diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 8f781fc..603adf2 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -63,8 +63,8 @@ 11LU035.WGS.N.hg38 11LU035 LUAD WGS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 97616909143 BAM NA 051bf441-b940-4e4b-95a9-86f8f892090c 32790a3f4a9a5734fa765782c4bc1a42 hg38 Blood Derived Normal 6b328a7b-2d97-4a02-8a6c-89f96a 11LU035.WGS.T 11LU035 LUAD WGS tumor CPT0051690010 CPT0051690010.WholeGenome.RP-1303.bam 74480616961 BAM NA 0b0c0e88-1aa3-44f5-a012-1510e623540a 6e4ccb5b5f85cbf312ad1f091c6434b4 hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 11LU035.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010 e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 113280187604 BAM NA 83b77360-ef94-43ea-9ac2-7229808e2512 b189b1c9f7d0de556e9cde70d6afa3fc hg38 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 -11LU035.WGS.T.UNAV_kZ2yRAx 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM NA c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNAV_kZ2yRAx This entity was not yet authorized to be released by the submitters -11LU035.WGS.T.UNAV_kZ2yRAx.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM NA 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 hg38 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNAV_kZ2yRAx This entity was not yet authorized to be released by the submitters +11LU035.WGS.T.UNK_kZ2yRAx 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM NA c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNK_kZ2yRAx This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +11LU035.WGS.T.UNK_kZ2yRAx.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM NA 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 hg38 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNK_kZ2yRAx This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot 11LU035.WXS.N 11LU035 LUAD WXS blood_normal CPT0034540002 CPT0034540002.WholeExome.RP-1303.bam 42687240835 BAM NA fc4c8b93-f6d9-4662-b524-66384d0666ed ac0049c8469d1f6adf872b0b9ed56c1a hg19 Blood Derived Normal 6b328a7b-2d97-4a02-8a6c-89f96a 11LU035.WXS.N.hg38 11LU035 LUAD WXS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 58600852881 BAM NA 7ac15e13-9ad5-43ec-9ab4-85844b7d218b ba6f9157169f002d0e08e52f9e8cadab hg38 Blood Derived Normal 6b328a7b-2d97-4a02-8a6c-89f96a 11LU035.WXS.T 11LU035 LUAD WXS tumor CPT0051690010 CPT0051690010.WholeExome.RP-1303.bam 27791488684 BAM NA 356fcdf9-26cc-449f-a484-19e036aa9101 cb7bd87e3a98b5152d636af9eb322240 hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 @@ -1510,8 +1510,8 @@ C3L-00095.WGS.N C3L-00095 LUAD WGS blood_normal CPT0003910002 CPT0003910002.Whol C3L-00095.WGS.N.hg38 C3L-00095 LUAD WGS blood_normal CPT0003910002 758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 197918081619 BAM NA fd525ceb-bac6-4283-9c24-73776b2451f6 5e142d4345d7787e94e6c04d394a8d2e hg38 Blood Derived Normal C3L-00095-31 C3L-00095.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005 CPT0001660005.WholeGenome.RP-1303.bam 148288840542 BAM NA 21e65603-ef7f-43af-bd5d-c51efdba6d4d fc02ed037f6c4364c291966d120b1bfa hg19 Primary Tumor C3L-00095-01 C3L-00095.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005 e0e4eca2-5f90-4ae4-924f-4e5548af49b1_gdc_realn.bam 214912595561 BAM NA ad7da10d-97cd-44e0-95ee-a71b1b488fcd f29196fe8021c623e5f0d96a5ad101de hg38 Primary Tumor C3L-00095-01 -C3L-00095.WGS.T.UNAV_q75goG C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM NA 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 hg19 Primary Tumor C3L-00095-01 sample_tag=UNAV_q75goG This entity was not yet authorized to be released by the submitters -C3L-00095.WGS.T.UNAV_q75goG.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM NA 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 hg38 Primary Tumor C3L-00095-01 sample_tag=UNAV_q75goG This entity was not yet authorized to be released by the submitters +C3L-00095.WGS.T.UNK_q75goG C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM NA 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 hg19 Primary Tumor C3L-00095-01 sample_tag=UNK_q75goG This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3L-00095.WGS.T.UNK_q75goG.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM NA 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 hg38 Primary Tumor C3L-00095-01 sample_tag=UNK_q75goG This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot C3L-00095.WXS.A C3L-00095 LUAD WXS tissue_normal CPT0001690009 CPT0001690009.WholeExome.RP-1303.bam 76609175796 BAM NA 383c93e4-a9a9-47f2-88f2-76ef669754c3 cd220380b9468f8a0f43a9c419f714ac hg19 Solid Tissue Normal C3L-00095-06 C3L-00095.WXS.A.hg38 C3L-00095 LUAD WXS tissue_normal CPT0001690009 8fe04429-c7db-4162-aad6-a408b805aa6d_wxs_gdc_realn.bam 103305046426 BAM NA b5f75ffd-bdff-4255-bd17-74dd003f190e 71770d7b5395aaa056469dc45ef2ea53 hg38 Solid Tissue Normal C3L-00095-06 C3L-00095.WXS.N C3L-00095 LUAD WXS blood_normal CPT0003910002 CPT0003910002.WholeExome.RP-1303.bam 39096668759 BAM NA 7080d591-3af7-44eb-963d-e9df4df9c776 494a271302d1ccae9ac1c880599bb753 hg19 Blood Derived Normal C3L-00095-31 @@ -3457,6 +3457,9 @@ C3L-00606.scRNA-Seq.R1.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_ C3L-00606.scRNA-Seq.R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R2_001.fastq.gz 20536180766 FASTQ NA de34e27a-d64a-41a1-a883-d9ef33055b9f e668e6fa36aa61fd8dc615a657a642d0 NA Primary Tumor C3L-00606-01 C3L-00606.scRNA-Seq.R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R2_001.fastq.gz 21071134741 FASTQ NA 0601ec15-081d-418f-a6dd-510ed23c5337 0abc388faaf4746c1f3f363bf2a6cf67 NA Primary Tumor C3L-00606-02 C3L-00606.scRNA-Seq.R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R2_001.fastq.gz 25485703292 FASTQ NA 423b2131-85be-4a3e-a8e3-7fd0a153c2db 9cc7e14fd80755b6c860e0e831b0a64f NA Primary Tumor C3L-00606-03 +C3L-00606.scRNA-Seq.T.hg38 C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 possorted_genome_bam.bam 19025066241 BAM NA 96a35eb6-61b1-431f-838e-a09618450c75 26d2dc5446646d25caaf8e4b2c0c599d hg38 Primary Tumor C3L-00606-01 +C3L-00606.scRNA-Seq.T.hg38 C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 possorted_genome_bam.bam 20245972318 BAM NA af308212-f526-4940-850f-26a298579b11 830548722971018774d90b403188631e hg38 Primary Tumor C3L-00606-02 +C3L-00606.scRNA-Seq.T.hg38 C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 possorted_genome_bam.bam 23849569805 BAM NA 0b956b04-5d23-49f8-9586-2ed71cbcc3fc 5699a009287f63d5f84ad90d1d5e5df3 hg38 Primary Tumor C3L-00606-03 C3L-00606.WGS.A C3L-00606 CCRCC WGS tissue_normal CPT0079300009 CPT0079300009.WholeGenome.RP-1303.bam 64686378157 BAM NA 33590b57-3b79-4b8c-8774-5d2b1f0f0aec 7e7ced207601d653d781a16875370022 hg19 Solid Tissue Normal C3L-00606-06 C3L-00606.WGS.A.hg38 C3L-00606 CCRCC WGS tissue_normal CPT0079300009 e037f72e-e7a4-424c-b007-234c10e41d24_wgs_gdc_realn.bam 95254866972 BAM NA 352f0caa-a6cf-49be-8476-de93adaa9b94 5a864ef7d922fdfceff3da1f1d776d52 hg38 Solid Tissue Normal C3L-00606-06 C3L-00606.WGS.N C3L-00606 CCRCC WGS blood_normal CPT0080110002 CPT0080110002.WholeGenome.RP-1303.bam 62412835946 BAM NA 66aa336c-f58c-4f03-a35f-93ade7810bda 820acfa47dc66cba54ea9db6a2fbc832 hg19 Blood Derived Normal C3L-00606-31 @@ -4388,11 +4391,11 @@ C3L-00907.WXS.T.HET_rp9PBB C3L-00907 CCRCC WXS tumor CPT0064390009 CPT0064390009 C3L-00907.WXS.T.HET_rp9PBB.hg38 C3L-00907 CCRCC WXS tumor CPT0064390009 4c8a309f-acb1-4487-a2eb-69dcca1c3f3c_wxs_gdc_realn.bam 30991151835 BAM NA 02cd1e72-e1ca-4196-8117-cb27e7e95a43 52432e3f77e3f70cdf1ed9ee126c3f87 hg38 Primary Tumor C3L-00907-03 sample_tag=HET_rp9PBB Duplicate item: CCRCC Tumor heterogeneity study aliquot C3L-00907.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064370006 f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 42988709588 BAM NA 5b8f478a-209f-47bc-893b-5d7302cd4f79 73e343702883bd9a89a67d572341d3a7 hg38 Primary Tumor C3L-00907-01 C3L-00908.MethArray.Green.A C3L-00908 CCRCC Methylation Array tissue_normal CPT0086370009 204930640120_R01C01_Grn.idat 13677885 IDAT Green f014e7c0-4c1b-4617-abe5-91ded63ed4bc e8759bfcc75666c3142c4c5f0cab1ecb NA Solid Tissue Normal C3L-00908-06 -C3L-00908.MethArray.Green.T.ADD_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa NA Primary Tumor C3L-00908-01 sample_tag=ADD_ol2z7j Additional DNA Distribution - Additional aliquot C3L-00908.MethArray.Green.T C3L-00908 CCRCC Methylation Array tumor CPT0086360009 202184900140_R04C01_Grn.idat 13676261 IDAT Green 098f45d0-13aa-4ca2-bffb-34c3a6cf0d5c 422f67f93dce0336fc874f8268f16de0 NA Primary Tumor C3L-00908-03 +C3L-00908.MethArray.Green.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00908.MethArray.Red.A C3L-00908 CCRCC Methylation Array tissue_normal CPT0086370009 204930640120_R01C01_Red.idat 13677885 IDAT Red a850babf-9a42-4309-9233-7b545bf65142 22dc71b942b4c69cbd329eeddaebca01 NA Solid Tissue Normal C3L-00908-06 -C3L-00908.MethArray.Red.T.ADD_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a NA Primary Tumor C3L-00908-01 sample_tag=ADD_ol2z7j Additional DNA Distribution - Additional aliquot C3L-00908.MethArray.Red.T C3L-00908 CCRCC Methylation Array tumor CPT0086360009 202184900140_R04C01_Red.idat 13676261 IDAT Red b3e7012a-66b0-4023-a59d-a89ceb1b3118 b9cacbd7ef67594fc80421d8902b71de NA Primary Tumor C3L-00908-03 +C3L-00908.MethArray.Red.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00908.miRNA-Seq.A C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L005_R1_001.unaln.bam 213873054 BAM NA 83df97b4-0757-4d5f-8698-cb7ea7a5feaf 64a1b3e4b04f3c60c019b96eb4768514 NA Solid Tissue Normal C3L-00908-06 C3L-00908.miRNA-Seq.A.hg38 C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 173c0d6a-bc67-4a72-b6d3-b2a411e24785_mirnaseq_gdc_realn.bam 243270795 BAM NA 7e41687b-c9d2-451f-bd6c-473cc0c58f3d a33bf2470cb149afc4d3515a6ce83eff hg38 Solid Tissue Normal C3L-00908-06 C3L-00908.miRNA-Seq.T.RRNA_rokDXE C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L005_R1_001.unaln.bam 159592216 BAM NA c7baf5bf-ac47-4c48-8613-d1740624348a 918420f6333943bca22ee271d18db2a3 NA Primary Tumor C3L-00908-01 sample_tag=RRNA_rokDXE Duplicate item: Replacement RNA Distribution - original aliquot failed @@ -4416,18 +4419,18 @@ C3L-00908.WGS.A C3L-00908 CCRCC WGS tissue_normal CPT0086370009 CPT0086370009.Wh C3L-00908.WGS.A.hg38 C3L-00908 CCRCC WGS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wgs_gdc_realn.bam 83858918538 BAM NA b76815f5-7f34-444f-b515-073f3c0fd55d bff453956793aeb5cb46435f151ba533 hg38 Solid Tissue Normal C3L-00908-06 C3L-00908.WGS.N C3L-00908 CCRCC WGS blood_normal CPT0087380001 CPT0087380001.WholeGenome.RP-1303.bam 69005389034 BAM NA 54774f95-e0ed-4a0b-902c-c384803cae33 fd939819ecd82cdff5f16167e19f9c32 hg19 Blood Derived Normal C3L-00908-31 C3L-00908.WGS.N.hg38 C3L-00908 CCRCC WGS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 105491829001 BAM NA d439db67-28d0-4b23-acfb-e87f913d6ada 5176c8427cd82b2796bd0e61c6334fcc hg38 Blood Derived Normal C3L-00908-31 -C3L-00908.WGS.T.ADD_ol2z7j C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM NA 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 hg19 Primary Tumor C3L-00908-01 sample_tag=ADD_ol2z7j Additional DNA Distribution - Additional aliquot -C3L-00908.WGS.T.ADD_ol2z7j.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM NA 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b hg38 Primary Tumor C3L-00908-01 sample_tag=ADD_ol2z7j Additional DNA Distribution - Additional aliquot C3L-00908.WGS.T C3L-00908 CCRCC WGS tumor CPT0086360009 CPT0086360009.WholeGenome.RP-1303.bam 89053374471 BAM NA b501f200-b532-4a5c-b0f2-7f0ff1c6bd64 536341c7701d23e9c9334d1e55743944 hg19 Primary Tumor C3L-00908-03 C3L-00908.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 136492159740 BAM NA 4702b461-f88e-4036-87cd-c8fc4ee0b733 ed3f6a0865cdf184a800f7b9f5dfe402 hg38 Primary Tumor C3L-00908-03 +C3L-00908.WGS.T.UNK_ol2z7j C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM NA 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.WGS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM NA 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00908.WXS.A C3L-00908 CCRCC WXS tissue_normal CPT0086370009 CPT0086370009.WholeExome.RP-1303.bam 30544588614 BAM NA d4991d91-01ce-45a4-9b10-485aad476e6a b751d56da3f7b0ebb47da449ef7ed358 hg19 Solid Tissue Normal C3L-00908-06 C3L-00908.WXS.A.hg38 C3L-00908 CCRCC WXS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wxs_gdc_realn.bam 41542806405 BAM NA 07483db5-5911-49c3-ba62-ddbeb3f36763 a3f02afe2a04ad9f9a5262654dd86718 hg38 Solid Tissue Normal C3L-00908-06 C3L-00908.WXS.N C3L-00908 CCRCC WXS blood_normal CPT0087380001 CPT0087380001.WholeExome.RP-1303.bam 30365609689 BAM NA 5e5c70f1-421b-455e-974a-a7f7782c2ddc d73d36afe6381f4b44e0561f695473a9 hg19 Blood Derived Normal C3L-00908-31 C3L-00908.WXS.N.hg38 C3L-00908 CCRCC WXS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 41730911569 BAM NA 9cf12b3e-3b97-4c25-ad51-d1eb46e5680d af151bc10b06cf1ddfa2b553fb3e4863 hg38 Blood Derived Normal C3L-00908-31 -C3L-00908.WXS.T.ADD_ol2z7j C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM NA 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 hg19 Primary Tumor C3L-00908-01 sample_tag=ADD_ol2z7j Additional DNA Distribution - Additional aliquot -C3L-00908.WXS.T.ADD_ol2z7j.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM NA c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f hg38 Primary Tumor C3L-00908-01 sample_tag=ADD_ol2z7j Additional DNA Distribution - Additional aliquot C3L-00908.WXS.T C3L-00908 CCRCC WXS tumor CPT0086360009 CPT0086360009.WholeExome.RP-1303.bam 29790261749 BAM NA f4f582bd-83a1-4d41-a4cb-8664d0d070a4 cd447af368efb58b7861fbbd2930fe80 hg19 Primary Tumor C3L-00908-03 C3L-00908.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 41321920933 BAM NA 7b0b6dc8-1437-4e91-a429-7bd9a48baa58 1f015c2e7f09eb87b9b567a4ac6bddc9 hg38 Primary Tumor C3L-00908-03 +C3L-00908.WXS.T.UNK_ol2z7j C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM NA 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.WXS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM NA c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00910.MethArray.Green.A C3L-00910 CCRCC Methylation Array tissue_normal CPT0007870009 203027390029_R03C01_Grn.idat 13676246 IDAT Green ce7a64d5-0c3d-4257-beae-974cf92bb974 ec32b0d8c542bf62478b8eef6c75e8e3 NA Solid Tissue Normal C3L-00910-06 C3L-00910.MethArray.Green.T C3L-00910 CCRCC Methylation Array tumor CPT0007860009 202176290145_R03C01_Grn.idat 13676225 IDAT Green da68f598-4293-4596-a38d-f04ed4cac2f8 b48a389dd72389b89727940929a235bf NA Primary Tumor C3L-00910-02 C3L-00910.MethArray.Red.A C3L-00910 CCRCC Methylation Array tissue_normal CPT0007870009 203027390029_R03C01_Red.idat 13676246 IDAT Red 8a8605ac-fc32-4c40-bfa8-8f3df83d6a5b 47e4a67e542be95248284df8095e60f0 NA Solid Tissue Normal C3L-00910-06 @@ -6800,7 +6803,8 @@ C3L-01287.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT00794100 C3L-01287.scRNA-Seq.R1.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R1_001.fastq.gz 5772404933 FASTQ NA c4ab83b0-c2ae-41b4-b8be-8e869ae4a29b aed9ea0bade87afdf697eb6dfe1f1260 NA Primary Tumor C3L-01287-01 C3L-01287.scRNA-Seq.R1.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R1_001.fastq.gz 5310421935 FASTQ NA 17ae6831-89e0-48ac-9494-c0eef843ee1b 7a22317d94393a81ff10ce36a767b68a NA Primary Tumor C3L-01287-03 C3L-01287.scRNA-Seq.R2.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R2_001.fastq.gz 20767153821 FASTQ NA beb30d25-bd64-4eac-a89f-6994cc5c79e2 447d7709baeab287d036a97ad43168c6 NA Primary Tumor C3L-01287-01 -C3L-01287.scRNA-Seq.R2.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R2_001.fastq.gz 5310421935 FASTQ NA c668590d-aa67-4384-bb99-bc7a84f99a5e 7a22317d94393a81ff10ce36a767b68a NA Primary Tumor C3L-01287-03 +C3L-01287.scRNA-Seq.R2.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R2_001.fastq.gz 19330724940 FASTQ NA ac65806e-14d3-490f-82ba-695246eb1d4f 00ab2fa11267b6df5834984eff54242b NA Primary Tumor C3L-01287-03 +C3L-01287.scRNA-Seq.T.hg38 C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 possorted_genome_bam.bam 19460451941 BAM NA ea814df0-bcbd-462c-9d32-8791efe6d671 8695e51973303d29fe98e6d0c49bd90b hg38 Primary Tumor C3L-01287-01 C3L-01287.WGS.A C3L-01287 CCRCC WGS tissue_normal CPT0079430009 CPT0079430009.WholeGenome.RP-1303.bam 56547235872 BAM NA db50ab6f-f97c-4f2e-8f50-5f2aa394cf58 6a9149181c133576f46c726ac5722b27 hg19 Solid Tissue Normal C3L-01287-06 C3L-01287.WGS.A.hg38 C3L-01287 CCRCC WGS tissue_normal CPT0079430009 3d55cf96-5355-4926-a2ad-a0d585794c90_wgs_gdc_realn.bam 82914064751 BAM NA 41dac961-197a-4e4e-a974-eb27f7be69a7 bfd9ded39444ac9e2ca459f8c9dd1782 hg38 Solid Tissue Normal C3L-01287-06 C3L-01287.WGS.N C3L-01287 CCRCC WGS blood_normal CPT0080130002 CPT0080130002.WholeGenome.RP-1303.bam 67898864269 BAM NA 936e07f1-b6c0-4bf7-bff2-8deb40ae9cc6 19b4ebf9d9df52e3729a87a84dad1093 hg19 Blood Derived Normal C3L-01287-31 @@ -8593,8 +8597,6 @@ C3L-01838.WXS.N C3L-01838 LSCC WXS blood_normal CPT0093670002 CPT0093670002.Whol C3L-01838.WXS.N.hg38 C3L-01838 LSCC WXS blood_normal CPT0093670002 c4403a57-0f50-47aa-8620-5271d576d48b_wxs_gdc_realn.bam 58339632345 BAM NA a0fdf089-7e23-4c80-9512-fac6fa5d0f88 168aed7b8e6801bdc57b06da1ad7f58b hg38 Blood Derived Normal C3L-01838-31 C3L-01838.WXS.T C3L-01838 LSCC WXS tumor CPT0091820009 CPT0091820009.WholeExome.RP-1303.bam 44183316114 BAM NA 36ec7bb1-8d1b-4cef-90d9-186cb8b52162 7d7654720c1f3a9d9185ed9c70b9d808 hg19 Primary Tumor C3L-01838-03 C3L-01838.WXS.T.hg38 C3L-01838 LSCC WXS tumor CPT0091820009 1860169f-3c25-44c2-b9fd-6349950c3dc8_wxs_gdc_realn.bam 60706591081 BAM NA 33238c06-e075-4303-a204-659c4c9971bd 81c1e3d8f28409f19f70abeb5c765192 hg38 Primary Tumor C3L-01838-03 -C3L-01839.MethArray.Green.T C3L-01839 GBM Methylation Array tumor CPT0092060009 202234360028_R04C01_Grn.idat 13676226 IDAT Green 96d4e496-06c9-4c7b-b8f6-76bb65d10f51 396a7db95220a8694a5528a29823d287 NA Primary Tumor C3L-01839-02 -C3L-01839.MethArray.Red.T C3L-01839 GBM Methylation Array tumor CPT0092060009 202234360028_R04C01_Red.idat 13676226 IDAT Red 8506d6b0-cd37-47e6-a41e-5e61ee65e347 ea0ff1bf01d61598563417ff4efc5eec NA Primary Tumor C3L-01839-02 C3L-01840.MethArray.Green.T C3L-01840 UCEC Methylation Array tumor CPT0091990009 202234360025_R04C01_Grn.idat 13676226 IDAT Green 52a6aba9-c755-4059-8dbd-eb1b71fc37ce 80dd7960a727f464931ddb5b80481f4f NA Primary Tumor C3L-01840-02 C3L-01840.MethArray.Red.T C3L-01840 UCEC Methylation Array tumor CPT0091990009 202234360025_R04C01_Red.idat 13676226 IDAT Red 1b77be27-d938-4d22-8275-1538bcd305b3 a1b445701dcac1006189f4942e21e61c NA Primary Tumor C3L-01840-02 C3L-01840.miRNA-Seq.T C3L-01840 UCEC miRNA-Seq tumor CPT0091990006 180828_UNC32-K00270_0112_AHWTLNBBXX_AGTTCC_S6_L006_R1_001.unaln.bam 225668641 BAM NA 7616cd16-5a17-44a5-a524-72a5bf2f4c5c a0d45909240f92319d4a5ed52332e2d7 NA Primary Tumor C3L-01840-02 @@ -10524,8 +10526,8 @@ C3L-02365.WGS.N C3L-02365 LUAD WGS blood_normal CPT0116900002 CPT0116900002.Whol C3L-02365.WGS.N.hg38 C3L-02365 LUAD WGS blood_normal CPT0116900002 bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wgs_gdc_realn.bam 92748330856 BAM NA 5a832acb-f0ed-4bac-b73b-fe54daf62b1a ca29d9b33198612cfe8a9b6a0d601ea5 hg38 Blood Derived Normal C3L-02365-31 C3L-02365.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009 CPT0114840009.WholeGenome.RP-1303.bam 55967118343 BAM NA 606c007e-32a3-485a-847f-cc691d1bb307 9eeb3954ef1adc9ca465f82600d214b5 hg19 Primary Tumor C3L-02365-01 C3L-02365.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009 1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wgs_gdc_realn.bam 82750501676 BAM NA cbafe4ae-36af-4011-9ce8-0ea290c6373b 95a7a0c9c06fa948b7980da609e08a47 hg38 Primary Tumor C3L-02365-01 -C3L-02365.WGS.T.UNAV_mYLkk1O C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM NA 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 hg19 Primary Tumor C3L-02365-01 sample_tag=UNAV_mYLkk1O This entity was not yet authorized to be released by the submitters -C3L-02365.WGS.T.UNAV_mYLkk1O.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM NA 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae hg38 Primary Tumor C3L-02365-01 sample_tag=UNAV_mYLkk1O This entity was not yet authorized to be released by the submitters +C3L-02365.WGS.T.UNK_mYLkk1O C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM NA 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 hg19 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3L-02365.WGS.T.UNK_mYLkk1O.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM NA 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae hg38 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters C3L-02365.WXS.A C3L-02365 LUAD WXS tissue_normal CPT0114880006 CPT0114880006.WholeExome.RP-1303.bam 33401060054 BAM NA b18e30e0-41f5-4761-812f-93a1f6a02b41 dec941d8db572fa44e2c2b6de58aefa0 hg19 Solid Tissue Normal C3L-02365-05 C3L-02365.WXS.A.hg38 C3L-02365 LUAD WXS tissue_normal CPT0114880006 d06fc371-1140-4b9b-85dc-0f57abda4664_wxs_gdc_realn.bam 44834783361 BAM NA e57292ba-138c-4fda-bd41-6f45f211a0a2 c48da16cddcf07720d88d28edfd96d37 hg38 Solid Tissue Normal C3L-02365-05 C3L-02365.WXS.N C3L-02365 LUAD WXS blood_normal CPT0116900002 CPT0116900002.WholeExome.RP-1303.bam 34586669883 BAM NA d083462b-4a5e-40a6-b8a3-847eb89baac8 bb1f95584ad9665e15e79c7415b45950 hg19 Blood Derived Normal C3L-02365-31 @@ -19490,8 +19492,11 @@ C3L-06912.MethArray.Green.T C3L-06912 LGG Methylation Array tumor CPT0388940011 C3L-06912.MethArray.Red.T C3L-06912 LGG Methylation Array tumor CPT0388940011 206009560066_R04C01_Red.idat 13677950 IDAT Red b31b7919-5e5e-4f48-b680-be7b5b94935c eb5afa5e81d98239383277ef71b86715 NA Primary Tumor C3L-06912-01 C3L-06912.miRNA-Seq.T C3L-06912 LGG miRNA-Seq tumor CPT0388940008 220505_UNC32-K00270_0319_AHMV2KBBXY_CGGAAT_S5_L003_R1_001.unaln.bam 386996923 BAM NA c31ac29e-a56e-4e48-b377-caf32badf113 b3050cf5276ec747c59d992e1fc45dd1 NA Primary Tumor C3L-06912-01 C3L-06912.miRNA-Seq.T.hg38 C3L-06912 LGG miRNA-Seq tumor CPT0388940008 dd37739a-f81b-472f-89ea-f146d9ac356a_mirnaseq_gdc_realn.bam 436232429 BAM NA a25db8b9-eabf-48f6-b771-a622614d55e7 4b6810155e49b65050a0ccd59f8ddd24 hg38 Primary Tumor C3L-06912-01 +C3L-06912.RNA-Seq.chimeric.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.chimeric.gdc_realn.bam 468324695 BAM chimeric cf5d0d25-96a8-4a6b-afe5-6d8936b1388f 9d2a2e860aa301c1eefa1c0388e8b0e7 hg38 Primary Tumor C3L-06912-01 +C3L-06912.RNA-Seq.genomic.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.genomic.gdc_realn.bam 7787271041 BAM genomic 94dbd3f9-2f9f-4182-8c61-e3b7fa6ec94b ce8cd6aed5308788986485a72ccdee50 hg38 Primary Tumor C3L-06912-01 C3L-06912.RNA-Seq.R1.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R1_001.fastq.gz 3876945813 FASTQ NA 8f2c2b6c-85de-49cf-86b7-f760a75e157a 0069031bc035562f5cc4e483f50f2875 NA Primary Tumor C3L-06912-01 C3L-06912.RNA-Seq.R2.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R2_001.fastq.gz 4045804806 FASTQ NA 9ff596fa-a71c-47cb-8547-114e3ba9da05 42a0d1c88599d3a9538397a067738f51 NA Primary Tumor C3L-06912-01 +C3L-06912.RNA-Seq.transcriptome.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.transcriptome.gdc_realn.bam 9751797948 BAM transcriptome 6f2e382a-3c4b-406d-94de-b68d644ad85d 60e18a03fd979d9b24a3dda6f0d71162 hg38 Primary Tumor C3L-06912-01 C3L-06912.WGS.N C3L-06912 LGG WGS blood_normal CPT0389050005 CPT0389050005.WholeGenome.RP-2158.bam 70563558355 BAM NA 767274c6-e610-4a1b-9899-1647d13939b4 d90469b36a7b9e3626ed3f96357b44bb hg19 Blood Derived Normal C3L-06912-31 C3L-06912.WGS.T C3L-06912 LGG WGS tumor CPT0388940011 CPT0388940011.WholeGenome.RP-2158.bam 129779104068 BAM NA b6f271ab-8986-4465-a214-f06c7e3b3d37 47ba8b844ec46eb1b3c81ca285afc00f hg19 Primary Tumor C3L-06912-01 C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-54 @@ -19747,6 +19752,7 @@ C3L-07212.MethArray.Green.T C3L-07212 LGG Methylation Array tumor CPT0447560012 C3L-07212.MethArray.Red.T C3L-07212 LGG Methylation Array tumor CPT0447560012 206250290178_R01C01_Red.idat 13677942 IDAT Red 8e8b37a3-d0f9-41da-a850-2baf9643d279 dc45b12943ecb40ace61cdc1f7ff1143 NA Primary Tumor C3L-07212-01 C3L-07212.miRNA-Seq.T C3L-07212 LGG miRNA-Seq tumor CPT0447560007 220505_UNC32-K00270_0319_AHMV2KBBXY_CTAGCT_S6_L003_R1_001.unaln.bam 310872045 BAM NA e44650c7-2e73-4786-bb16-e7a3d837fe16 06345681442ce851c00904871d0a65ba NA Primary Tumor C3L-07212-01 C3L-07212.miRNA-Seq.T.hg38 C3L-07212 LGG miRNA-Seq tumor CPT0447560007 deca3f1a-5e78-4c28-a713-60d30337a896_mirnaseq_gdc_realn.bam 343046530 BAM NA 72a1c78c-d3bc-4888-9875-03abdddc0ea8 b908081b3c2c700bf492f17005d6ce0b hg38 Primary Tumor C3L-07212-01 +C3L-07212.RNA-Seq.genomic.T.hg38 C3L-07212 LGG RNA-Seq tumor CPT0447560007 99d94a22-d7a8-4761-83cb-efb10f02b555.rna_seq.genomic.gdc_realn.bam 2116258222 BAM genomic 1d6d9931-9d25-4a05-8a03-8eb55cb2e3f7 407ef490f950e1c8fe1e39e5c9afd3f3 hg38 Primary Tumor C3L-07212-01 C3L-07212.RNA-Seq.R1.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R1_001.fastq.gz 2006897789 FASTQ NA 93b39fb7-26e7-4e70-9145-726cd8868b5b eb2c1e2b53c14f292b2fc9e2dc637a97 NA Primary Tumor C3L-07212-01 C3L-07212.RNA-Seq.R2.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R2_001.fastq.gz 2105896279 FASTQ NA ec4877da-dfc4-4a6a-ac9c-5500fa56ba2c fa90596fa5a4ff3fb26b3750a624bb09 NA Primary Tumor C3L-07212-01 C3L-07212.WGS.N C3L-07212 LGG WGS blood_normal CPT0447490001 CPT0447490001.WholeGenome.RP-2158.bam 59771375114 BAM NA b5d0da29-0fbe-4a40-b814-025b6c7e872b 00ac381510523f28795ad33298a331fb hg19 Blood Derived Normal C3L-07212-31 @@ -19885,11 +19891,14 @@ C3N-00148.scRNA-Seq.R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_ C3N-00148.scRNA-Seq.R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R1_001.fastq.gz 2729330431 FASTQ NA 6973e83e-2258-438b-8930-1cc7149ec62a 7abd0e4e16bfb8a6bdb94d8f599d6aeb NA Primary Tumor C3N-00148-04 C3N-00148.scRNA-Seq.R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R1_001.fastq.gz 3266690810 FASTQ NA 5e058d5d-614b-4f75-bd9b-f9e623f25bb2 0aa4d1a32c688d5bcc404abaf1a449c0 NA Primary Tumor C3N-00148-04 C3N-00148.scRNA-Seq.R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R2_001.fastq.gz 16324750458 FASTQ NA 517b282d-1f91-4d37-999f-1a86d84f466e 3de0b535ea35934be411ce1560cf6108 NA Primary Tumor C3N-00148-01 -C3N-00148.scRNA-Seq.R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R2_001.fastq.gz 4782641146 FASTQ NA 6ac52a76-b8da-4f73-82e6-985080acafc3 47789ffcf6f9ad3d24374fea0ab7b0b9 NA Primary Tumor C3N-00148-02 +C3N-00148.scRNA-Seq.R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R2_001.fastq.gz 16876236863 FASTQ NA ab2879e7-a26c-451b-a94f-ad7b54c9e92c c52018aef4dfab26ae0330adf446d1a9 NA Primary Tumor C3N-00148-02 C3N-00148.scRNA-Seq.R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R2_001.fastq.gz 7808630322 FASTQ NA aff0b02f-54c3-477b-b378-b16b561f59b9 7c9001db35aa622bc9073f145fd2cbb5 NA Primary Tumor C3N-00148-03 C3N-00148.scRNA-Seq.R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R2_001.fastq.gz 11002906348 FASTQ NA cc04ff73-6900-4928-885c-552cd8b11b7a f86593168fe72dca9765a868dc1a8c81 NA Primary Tumor C3N-00148-03 C3N-00148.scRNA-Seq.R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R2_001.fastq.gz 9553422581 FASTQ NA 92e4f7f5-2dd1-4901-ac67-00de1bdb01dc 6c126ccff34770454566b3416fd48b7a NA Primary Tumor C3N-00148-04 C3N-00148.scRNA-Seq.R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R2_001.fastq.gz 11520663145 FASTQ NA e6457d1b-b66c-4681-8420-6c1bb80e92d9 6741a5271692a91db8769147ecc40dd7 NA Primary Tumor C3N-00148-04 +C3N-00148.scRNA-Seq.T.hg38 C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 possorted_genome_bam.bam 15610409845 BAM NA b906eb6f-4951-4eeb-b675-cf4b5d643636 2db25b379f94469c92f6a9bb289bf58c hg38 Primary Tumor C3N-00148-01 +C3N-00148.scRNA-Seq.T.hg38 C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 possorted_genome_bam.bam 18740378119 BAM NA c86ee747-701e-4410-bc3c-0ca2b8aa707d 4828460752fb291d68c75401db3ba9e8 hg38 Primary Tumor C3N-00148-03 +C3N-00148.scRNA-Seq.T.hg38 C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 possorted_genome_bam.bam 21212833137 BAM NA 2a61eb5f-66a1-447f-a659-5f722d248098 cb1b5ddff26013cb3683b986bf9ee5c1 hg38 Primary Tumor C3N-00148-04 C3N-00148.WGS.A C3N-00148 CCRCC WGS tissue_normal CPT0081620009 CPT0081620009.WholeGenome.RP-1303.bam 53860588095 BAM NA 5bdf214f-fa22-4a94-94f2-87bf6021505f e81f87af060d1bb9bd72c3497d907bac hg19 Solid Tissue Normal C3N-00148-06 C3N-00148.WGS.A.hg38 C3N-00148 CCRCC WGS tissue_normal CPT0081620009 03f3a930-23ac-4022-a180-7eddf513f3a6_wgs_gdc_realn.bam 78288422049 BAM NA 31226045-9a66-42b4-bfef-6e2b3eec8b23 8a0f887ce5c33652a03dba9e2c98b5ca hg38 Solid Tissue Normal C3N-00148-06 C3N-00148.WGS.N C3N-00148 CCRCC WGS blood_normal CPT0081700002 CPT0081700002.WholeGenome.RP-1303.bam 89652895870 BAM NA 3ca1f926-6bb2-47ba-a820-86a3663e1f76 e34f27ed633e3f654d52d9c1478e5b21 hg19 Blood Derived Normal C3N-00148-71 @@ -19956,6 +19965,9 @@ C3N-00149.scRNA-Seq.R1.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_ C3N-00149.scRNA-Seq.R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R2_001.fastq.gz 18493130295 FASTQ NA 9a43af8f-0bc6-4248-a079-bd5cffaec59d f3433c19bcde63f5e320a18db6404bcf NA Primary Tumor C3N-00149-02 C3N-00149.scRNA-Seq.R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R2_001.fastq.gz 20498978988 FASTQ NA 87c9c71c-1d8a-4664-b2ae-e59c22529c31 fee2654b3f2700541a387dd079f28af8 NA Primary Tumor C3N-00149-03 C3N-00149.scRNA-Seq.R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R2_001.fastq.gz 23395672432 FASTQ NA 1e87f1a6-aad1-4280-b951-9516931886e4 f2ec5117b63202cfd7747f8ff1088ae7 NA Primary Tumor C3N-00149-04 +C3N-00149.scRNA-Seq.T.hg38 C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 possorted_genome_bam.bam 18753806455 BAM NA 909dd050-d623-4be4-b4ad-2f1acaae7588 82fa525c000c9c3b6b40f84382f4df19 hg38 Primary Tumor C3N-00149-02 +C3N-00149.scRNA-Seq.T.hg38 C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 possorted_genome_bam.bam 19873759001 BAM NA c3f4e95b-0499-47cf-a02c-8558d3072953 b091cabbea3e6cad948082d32893a40d hg38 Primary Tumor C3N-00149-03 +C3N-00149.scRNA-Seq.T.hg38 C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 possorted_genome_bam.bam 21307805775 BAM NA f43f3fb7-7984-43d7-b53e-50118a3f6d73 b63935626e6e222b2443f4a59abdef57 hg38 Primary Tumor C3N-00149-04 C3N-00149.WGS.A C3N-00149 CCRCC WGS tissue_normal CPT0084590009 CPT0084590009.WholeGenome.RP-1303.bam 65199872615 BAM NA 1fdcbfca-3e89-4f14-ad23-ce75a9e988b5 0d0bc062e601b074ea98b77af63d84c2 hg19 Solid Tissue Normal C3N-00149-06 C3N-00149.WGS.A.hg38 C3N-00149 CCRCC WGS tissue_normal CPT0084590009 c1c83894-a954-4e46-a807-5bbfd8b63134_wgs_gdc_realn.bam 95630791325 BAM NA 07b25196-257f-4cc6-8e26-03b8bee7bae8 0103ebe2640517b605d7d554852ae431 hg38 Solid Tissue Normal C3N-00149-06 C3N-00149.WGS.N C3N-00149 CCRCC WGS blood_normal CPT0085310002 CPT0085310002.WholeGenome.RP-1303.bam 77407443278 BAM NA c5562b54-6f0c-49ec-8792-db4288d2680d a37dfd27fdd195a1ef585537e757eb2f hg19 Blood Derived Normal C3N-00149-31 @@ -20615,8 +20627,8 @@ C3N-00217.WGS.N C3N-00217 LUAD WGS blood_normal CPT0092500002 CPT0092500002.Whol C3N-00217.WGS.N.hg38 C3N-00217 LUAD WGS blood_normal CPT0092500002 df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wgs_gdc_realn.bam 82819130250 BAM NA 7c0fa13b-ae71-42df-800a-a9480cc67133 c53a7e2b9034753a377407f251aa13af hg38 Blood Derived Normal C3N-00217-31 C3N-00217.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010 CPT0090570010.WholeGenome.RP-1303.bam 77202007467 BAM NA c0c2069c-1cd9-4e3b-ae40-4617f7c010dd 2cd3b8753fec2a69f03f85c588e0d6bb hg19 Primary Tumor C3N-00217-02,C3N-00217-04 C3N-00217.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010 e6268f9c-fd73-4163-8824-eca1dab52d32_wgs_gdc_realn.bam 111488141459 BAM NA c3101c27-4922-4e8e-890a-d8f838e04751 88e105dd4bc8e4e64dfe5d24c7fc1f75 hg38 Primary Tumor C3N-00217-02,C3N-00217-04 -C3N-00217.WGS.T.UNAV_k2PnDB6 C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM NA b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e hg19 Primary Tumor C3N-00217-02 sample_tag=UNAV_k2PnDB6 This entity was not yet authorized to be released by the submitters -C3N-00217.WGS.T.UNAV_k2PnDB6.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM NA 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da hg38 Primary Tumor C3N-00217-02 sample_tag=UNAV_k2PnDB6 This entity was not yet authorized to be released by the submitters +C3N-00217.WGS.T.UNK_k2PnDB6 C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM NA b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e hg19 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3N-00217.WGS.T.UNK_k2PnDB6.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM NA 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da hg38 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot C3N-00217.WXS.A C3N-00217 LUAD WXS tissue_normal CPT0090600009 CPT0090600009.WholeExome.RP-1303.bam 35193499504 BAM NA a81d1be0-5e52-42a1-877e-6e3354c41ae0 049a85e9fe159a49f5b954c1d6c6bfb1 hg19 Solid Tissue Normal C3N-00217-06 C3N-00217.WXS.A.hg38 C3N-00217 LUAD WXS tissue_normal CPT0090600009 e21dba0d-f7c8-43ca-abe2-d532ac286c53_wxs_gdc_realn.bam 48560284391 BAM NA bb1871eb-69df-4c1e-a654-bd2212f6a763 d76fd0c2027b4f42ed025ef3a60fefc1 hg38 Solid Tissue Normal C3N-00217-06 C3N-00217.WXS.N C3N-00217 LUAD WXS blood_normal CPT0092500002 CPT0092500002.WholeExome.RP-1303.bam 25344310806 BAM NA b6c851ae-dc4e-4364-91ce-87754a3cd60f 23d61aac67f08a677639acdd786f8e2e hg19 Blood Derived Normal C3N-00217-31 @@ -23673,10 +23685,10 @@ C3N-00738.WGS.A C3N-00738 LUAD WGS tissue_normal CPT0112080009 CPT0112080009.Who C3N-00738.WGS.A.hg38 C3N-00738 LUAD WGS tissue_normal CPT0112080009 643e6040-6a88-47a8-98d8-8ef4f1e2e9fb_wgs_gdc_realn.bam 81323277017 BAM NA 9dd20f55-cf21-4059-95bc-eb58c1c89df9 4b9506297f7837468003923415ed351d hg38 Solid Tissue Normal C3N-00738-03 C3N-00738.WGS.N C3N-00738 LUAD WGS blood_normal CPT0112180002 CPT0112180002.WholeGenome.RP-1303.bam 67071194409 BAM NA a9a0dc76-964a-495b-be50-ca660cc027fa bdcddce910cc5c2e9b5c5c8b55b2b45d hg19 Blood Derived Normal C3N-00738-31,C3N-00738-71 C3N-00738.WGS.N.hg38 C3N-00738 LUAD WGS blood_normal CPT0112180002 685d5364-aae3-4291-8104-7f616deea3ef_wgs_gdc_realn.bam 97963432308 BAM NA 30ae2920-9929-4fae-81b0-37460fc129af a511678b1f22b83f6b1c8c3c279e8caa hg38 Blood Derived Normal C3N-00738-31,C3N-00738-71 -C3N-00738.WGS.T.ADNA_mYJlwXA C3N-00738 LUAD WGS tumor CPT0112060009_2 CPT0112060009_2.WholeGenome.RP-2158.bam 154077440808 BAM NA 94a31beb-521c-44b1-b306-9d0532bbd7d4 cceb8d50b2f7ad07cabad64ea6dfd7d1 hg19 Primary Tumor C3N-00738-01 sample_tag=ADNA_mYJlwXA Duplicate item: Supplementary DNA Aliquot -C3N-00738.WGS.T.ADNA_mYJlwXA.hg38 C3N-00738 LUAD WGS tumor CPT0112060009_2 f841b8b6-56fe-480c-8f34-d15a55acc14b_wgs_gdc_realn.bam 463286204766 BAM NA 116d9a61-1509-487b-ba1d-ffbb4c674bd0 2b299366f5e9d0aae8e9298ff6599c81 hg38 Primary Tumor C3N-00738-01 sample_tag=ADNA_mYJlwXA Duplicate item: Supplementary DNA Aliquot C3N-00738.WGS.T C3N-00738 LUAD WGS tumor CPT0112060009 CPT0112060009.WholeGenome.RP-1303.bam 61677627882 BAM NA a56e7db7-a2bb-4c78-a11b-19e6e0d217af 639531b1de1529f226915198f1d4c1af hg19 Primary Tumor C3N-00738-01 C3N-00738.WGS.T.hg38 C3N-00738 LUAD WGS tumor CPT0112060009 3bd3461d-938c-44f1-96d1-232f0174c7cf_wgs_gdc_realn.bam 89858811900 BAM NA afb602be-8c13-4f89-b5d8-ec5fdc56c661 5e603d55dcd3b67c4c15dd61c6c2c651 hg38 Primary Tumor C3N-00738-01 +C3N-00738.WGS.T.UNK_mYJlwXA C3N-00738 LUAD WGS tumor CPT0112060009_2 CPT0112060009_2.WholeGenome.RP-2158.bam 154077440808 BAM NA 94a31beb-521c-44b1-b306-9d0532bbd7d4 cceb8d50b2f7ad07cabad64ea6dfd7d1 hg19 Primary Tumor C3N-00738-01 sample_tag=UNK_mYJlwXA This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3N-00738.WGS.T.UNK_mYJlwXA.hg38 C3N-00738 LUAD WGS tumor CPT0112060009_2 f841b8b6-56fe-480c-8f34-d15a55acc14b_wgs_gdc_realn.bam 463286204766 BAM NA 116d9a61-1509-487b-ba1d-ffbb4c674bd0 2b299366f5e9d0aae8e9298ff6599c81 hg38 Primary Tumor C3N-00738-01 sample_tag=UNK_mYJlwXA This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot C3N-00738.WXS.A C3N-00738 LUAD WXS tissue_normal CPT0112080009 CPT0112080009.WholeExome.RP-1303.bam 35997796274 BAM NA 25aea754-f684-4859-8a96-9f7d584589e4 acb0d2737b4035e260fe52365521592d hg19 Solid Tissue Normal C3N-00738-03 C3N-00738.WXS.A.hg38 C3N-00738 LUAD WXS tissue_normal CPT0112080009 643e6040-6a88-47a8-98d8-8ef4f1e2e9fb_wxs_gdc_realn.bam 48926508871 BAM NA df972ff7-76a0-4703-a9cd-a24fdc232f5c 6f892331ed2ce9dcbecee068b5c75fcb hg38 Solid Tissue Normal C3N-00738-03 C3N-00738.WXS.N C3N-00738 LUAD WXS blood_normal CPT0112180002 CPT0112180002.WholeExome.RP-1303.bam 41373238340 BAM NA 8be0de8d-ea56-453b-ba11-6226a2887c34 8d3f33b62d7dd872e9ca6a6ca15fb48d hg19 Blood Derived Normal C3N-00738-31,C3N-00738-71 @@ -25752,6 +25764,7 @@ C3N-01199.MethArray.Green.T C3N-01199 GBM Methylation Array tumor CPT0457680011 C3N-01199.MethArray.Red.T C3N-01199 GBM Methylation Array tumor CPT0457680011 205987780179_R05C01_Red.idat 13677940 IDAT Red 82e35981-d14d-4901-b85a-0da82e7dbf87 e28beecf5bc080a642ce933c92e170b1 NA Primary Tumor C3N-01199-04 C3N-01199.miRNA-Seq.T C3N-01199 GBM miRNA-Seq tumor CPT0457680008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTATAC_S7_L003_R1_001.unaln.bam 264368830 BAM NA 64dab22d-ddf0-4ceb-9775-95cb13aba156 63b556759c4323d4308c452bf5397ad1 NA Primary Tumor C3N-01199-04 C3N-01199.miRNA-Seq.T.hg38 C3N-01199 GBM miRNA-Seq tumor CPT0457680008 35e119ee-ff02-4ac2-9cfa-bc26defda320_mirnaseq_gdc_realn.bam 301722755 BAM NA 1d9c73a5-81bc-451c-a43a-d906405f7445 38c44fa8740549cf939d0ae836fe13d0 hg38 Primary Tumor C3N-01199-04 +C3N-01199.RNA-Seq.genomic.T.hg38 C3N-01199 GBM RNA-Seq tumor CPT0457680008 0e56f6aa-3dc2-41bc-aefa-d572e56f3e73.rna_seq.genomic.gdc_realn.bam 4799661040 BAM genomic 708b5ad7-e687-4227-a80a-0de74a892c12 925f65f81a6175898428e52a011b67a8 hg38 Primary Tumor C3N-01199-04 C3N-01199.RNA-Seq.R1.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R1_001.fastq.gz 5000286535 FASTQ NA 742a45a1-2eb8-44d5-912e-8747b99a93d4 2153ef9bd3c1d42588e4749539a8fdbf NA Primary Tumor C3N-01199-04 C3N-01199.RNA-Seq.R2.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R2_001.fastq.gz 5203845866 FASTQ NA d457808c-dc8e-4904-9c85-9a6c5fff4b0a 02bce17f1695973dd385d8cea6689575 NA Primary Tumor C3N-01199-04 C3N-01199.WGS.N C3N-01199 GBM WGS blood_normal CPT0402850001 CPT0402850001.WholeGenome.RP-2158.bam 60409941422 BAM NA 9ac6dbcf-a44d-4871-bc05-54e7ad5b79da bd52da88c8c74ad14e85d9a240018fc4 hg19 Blood Derived Normal C3N-01199-31 @@ -26536,8 +26549,6 @@ C3N-01369.WXS.N C3N-01369 GBM WXS blood_normal CPT0162040002 CPT0162040002.Whole C3N-01369.WXS.N.hg38 C3N-01369 GBM WXS blood_normal CPT0162040002 72e8c076-6bc4-4274-b90c-188820d472a1_wxs_gdc_realn.bam 38579615783 BAM NA c5dd898e-88c5-49b4-9ac7-439751ae8efa 92b8384348db0a652946f41f5259e765 hg38 Blood Derived Normal C3N-01369-31 C3N-01369.WXS.T C3N-01369 GBM WXS tumor CPT0162020006 CPT0162020006.WholeExome.RP-1303.bam 18141477488 BAM NA b020ef3e-ebf5-4a61-bfd6-b9fa78bd3455 77b44887f2dda72ed058d8bdbef2bf30 hg19 Primary Tumor C3N-01369-01 C3N-01369.WXS.T.hg38 C3N-01369 GBM WXS tumor CPT0162020006 b97f843a-68a7-430f-b277-93c55b7f4b76_wxs_gdc_realn.bam 25394906825 BAM NA b89dd1e7-fcaa-4792-98de-8e2cc70a211e 270f9fd534e09e3f68205502d37d3751 hg38 Primary Tumor C3N-01369-01 -C3N-01370.MethArray.Green.T C3N-01370 GBM Methylation Array tumor CPT0162060005 203027390105_R06C01_Grn.idat 13676226 IDAT Green 829f0a38-645f-4fda-8a43-0890dce5e761 0492d1459a50a520ac246b84f4c5286f NA Primary Tumor C3N-01370-06 -C3N-01370.MethArray.Red.T C3N-01370 GBM Methylation Array tumor CPT0162060005 203027390105_R06C01_Red.idat 13676226 IDAT Red 3d298857-d0c1-4988-b018-e0a6e93ca776 f5262f8ca267478135f287d93e454816 NA Primary Tumor C3N-01370-06 C3N-01375.MethArray.Green.T.deprecated C3N-01375 PDA Methylation Array tumor CPT0088180010 202176300039_R04C01_Grn.idat 13676226 IDAT Green 3546b2b5-aacd-4d5d-8a51-8126e12649a2 aee60fce591936010bee985677927601 NA Primary Tumor C3N-01375-02,C3N-01375-03 local_meta=.deprecated C3N-01375.MethArray.Red.T.deprecated C3N-01375 PDA Methylation Array tumor CPT0088180010 202176300039_R04C01_Red.idat 13676226 IDAT Red 026d56e3-e7b7-4dc7-9605-9408925e4fca c0abca957d67db3b8759c69141379f9f NA Primary Tumor C3N-01375-02,C3N-01375-03 local_meta=.deprecated C3N-01375.miRNA-Seq.T C3N-01375 PDA miRNA-Seq tumor CPT0088180007 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L008_R1_001.unaln.bam 204619641 BAM NA c731a132-c70d-4c56-a21b-40271cafe848 b28a9af548dc3f81c4107ff4987fc445 NA Primary Tumor C3N-01375-02,C3N-01375-03 @@ -28619,8 +28630,6 @@ C3N-01816.WXS.N C3N-01816 GBM WXS blood_normal CPT0168120002 CPT0168120002.Whole C3N-01816.WXS.N.hg38 C3N-01816 GBM WXS blood_normal CPT0168120002 0582feca-5f76-4ca8-99a1-2183174f62a9_wxs_gdc_realn.bam 38245434442 BAM NA 8e45b01f-e38d-4f18-8795-d8b6a96135d9 a8004bfd8aadd740ac5d257e6e36f8ec hg38 Blood Derived Normal C3N-01816-71 C3N-01816.WXS.T C3N-01816 GBM WXS tumor CPT0168080006 CPT0168080006.WholeExome.RP-1303.bam 21121946020 BAM NA db517266-de6d-4709-924d-0fe55c20fdcc 143bfc03839f0298dc84ff81be61284a hg19 Primary Tumor C3N-01816-01 C3N-01816.WXS.T.hg38 C3N-01816 GBM WXS tumor CPT0168080006 1ecfbcc3-a1a0-43e6-aa4f-97bd311b794a_wxs_gdc_realn.bam 28721040012 BAM NA 198d89fa-8356-4272-a437-9e84a05200ad eb8a4c7cefb19085d2f1943b532ef6d2 hg38 Primary Tumor C3N-01816-01 -C3N-01817.MethArray.Green.T C3N-01817 GBM Methylation Array tumor CPT0168170005 203028200104_R08C01_Grn.idat 13676235 IDAT Green 190a047a-a47d-4b61-b44c-4162a053f59e e7f2ce948c6f51c0f14dcd6a96e3cc59 NA Primary Tumor C3N-01817-01 -C3N-01817.MethArray.Red.T C3N-01817 GBM Methylation Array tumor CPT0168170005 203028200104_R08C01_Red.idat 13676235 IDAT Red e2b94334-70f0-4c42-bdb1-bce7f378d4ec fb80069c356c492ead16971c8d8d1da1 NA Primary Tumor C3N-01817-01 C3N-01818.MethArray.Green.T C3N-01818 GBM Methylation Array tumor CPT0168270006 203027380028_R07C01_Grn.idat 13676241 IDAT Green a452c7cf-ae53-45df-a69c-e309e13ffcbc 14b3ea3537333a9e8a5ead6b95b4dcc6 NA Primary Tumor C3N-01818-02 C3N-01818.MethArray.Red.T C3N-01818 GBM Methylation Array tumor CPT0168270006 203027380028_R07C01_Red.idat 13676241 IDAT Red fc76c7f3-367c-4090-8a75-cf97e6ebe91a c81e24795ee34e576de1abae7aac0ea5 NA Primary Tumor C3N-01818-02 C3N-01818.miRNA-Seq.T C3N-01818 GBM miRNA-Seq tumor CPT0168270009 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 158294814 BAM NA 6fa3e85c-336a-4f18-9664-d70307d7e95e 77fb240e79cd97e9cda2fa29631dfd79 NA Primary Tumor C3N-01818-02 @@ -28660,10 +28669,10 @@ C3N-01823.WGS.A C3N-01823 LUAD WGS tissue_normal CPT0097600009 CPT0097600009.Who C3N-01823.WGS.A.hg38 C3N-01823 LUAD WGS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wgs_gdc_realn.bam 91356898324 BAM NA 43e69023-7983-4e5d-b4aa-a5d3173681a6 730306133cbf8d474cdad4592a0361af hg38 Solid Tissue Normal C3N-01823-06 C3N-01823.WGS.N C3N-01823 LUAD WGS blood_normal CPT0097610002 CPT0097610002.WholeGenome.RP-1303.bam 61052134386 BAM NA 5c696797-28f6-416a-b769-967313645a8e 0b86cdcd69fea5c76e2b064f51b5dc1b hg19 Blood Derived Normal C3N-01823-31,C3N-01823-71 C3N-01823.WGS.N.hg38 C3N-01823 LUAD WGS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wgs_gdc_realn.bam 89541195809 BAM NA 59fd9c47-a049-4483-90bf-3650711651ee 1d83c76bafae811ea4b81e87b3a0edb3 hg38 Blood Derived Normal C3N-01823-31,C3N-01823-71 -C3N-01823.WGS.T.ADNA_mqAXELr C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM NA 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 hg19 Primary Tumor C3N-01823-02 sample_tag=ADNA_mqAXELr Duplicate item: Supplementary DNA Aliquot -C3N-01823.WGS.T.ADNA_mqAXELr.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM NA 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 hg38 Primary Tumor C3N-01823-02 sample_tag=ADNA_mqAXELr Duplicate item: Supplementary DNA Aliquot C3N-01823.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009 CPT0097580009.WholeGenome.RP-1303.bam 65656450281 BAM NA c85d58e0-c631-494c-bd98-314a1dc8134e 66c86771c4dc933a8d6bc193c02d6d63 hg19 Primary Tumor C3N-01823-02 C3N-01823.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wgs_gdc_realn.bam 96055710690 BAM NA cfcf2f7b-9f70-47a0-a2f0-d864ba6326ad ff311311a00abf25d13ba1cd79fd3578 hg38 Primary Tumor C3N-01823-02 +C3N-01823.WGS.T.UNK_mqAXELr C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM NA 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 hg19 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3N-01823.WGS.T.UNK_mqAXELr.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM NA 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 hg38 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot C3N-01823.WXS.A C3N-01823 LUAD WXS tissue_normal CPT0097600009 CPT0097600009.WholeExome.RP-1303.bam 34217317088 BAM NA 771f8925-7283-4736-8e3e-f126c481e2f1 82c84f0a3406f45f76094bb7708a5972 hg19 Solid Tissue Normal C3N-01823-06 C3N-01823.WXS.A.hg38 C3N-01823 LUAD WXS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wxs_gdc_realn.bam 46062396631 BAM NA ae1ed438-07f1-44aa-9690-121cfdb635e9 e8d141483f556977231f0e4be01c39eb hg38 Solid Tissue Normal C3N-01823-06 C3N-01823.WXS.N C3N-01823 LUAD WXS blood_normal CPT0097610002 CPT0097610002.WholeExome.RP-1303.bam 26376253830 BAM NA 9609fe2a-7678-4fb7-aed1-37decce3b4a1 662777ce742428bf53774cd84174dcb2 hg19 Blood Derived Normal C3N-01823-31,C3N-01823-71 @@ -35062,10 +35071,10 @@ C3N-02996.WXS.N.BIOTEXT_kRr2lDE C3N-02996 PDA WXS blood_normal CPT0187870002 CPT C3N-02996.WXS.N.BIOTEXT_kRr2lDE.hg38 C3N-02996 PDA WXS blood_normal CPT0187870002 73505858-157d-4d4f-8e84-359a6344de48_wxs_gdc_realn.bam 35792510687 BAM NA 8c1b0bfa-edfc-4d5f-a009-42e5c796dd3f 05ed0c24e0850b51e6d30d74a5d1f74f hg38 Blood Derived Normal C3N-02996-31 sample_tag=BIOTEXT_kRr2lDE Duplicate item: PDA BIOTEXT DNA C3N-02996.WXS.T.BIOTEXT_1wGW0DG C3N-02996 PDA WXS tumor CPT0187820034 CPT0187820034.WholeExome.RP-1303.bam 23045307994 BAM NA d29aebf7-b7ff-4241-a3e6-bb0f3dfc54eb 6db4755450dddbbef51206f5dec25926 hg19 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_1wGW0DG Duplicate item: PDA BIOTEXT DNA C3N-02996.WXS.T.BIOTEXT_1wGW0DG.hg38 C3N-02996 PDA WXS tumor CPT0187820034 f33b3ac6-a22a-4e63-8480-429e1c2d27ba_wxs_gdc_realn.bam 31875468805 BAM NA b8fc5c89-2d65-40ab-a969-62db1d608896 fb77d5d8f6ec9910a07fe816d6fba9ed hg38 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_1wGW0DG Duplicate item: PDA BIOTEXT DNA -C3N-02996.WXS.T.BIOTEXT_YEyWzRW C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM NA 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd hg19 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_YEyWzRW Duplicate item: PDA BIOTEXT DNA -C3N-02996.WXS.T.BIOTEXT_YEyWzRW.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM NA 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 hg38 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_YEyWzRW Duplicate item: PDA BIOTEXT DNA C3N-02996.WXS.T.BIOTEXT_Z6zYAR8 C3N-02996 PDA WXS tumor CPT0187820033 CPT0187820033.WholeExome.RP-1303.bam 37486064868 BAM NA 1af7be40-3009-47b4-81e0-63e1b75075e5 183d3999101070ee576cff2b4a0f2c5e hg19 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_Z6zYAR8 Duplicate item: PDA BIOTEXT DNA C3N-02996.WXS.T.BIOTEXT_Z6zYAR8.hg38 C3N-02996 PDA WXS tumor CPT0187820033 6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM NA ed5bb7bd-bedf-4585-9849-16526aae512a b3ff7e7c8215f8c438647c99389abe15 hg38 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_Z6zYAR8 Duplicate item: PDA BIOTEXT DNA +C3N-02996.WXS.T.UNK_YEyWzRW C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM NA 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd hg19 Primary Tumor C3N-02996-02 sample_tag=UNK_YEyWzRW Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA +C3N-02996.WXS.T.UNK_YEyWzRW.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM NA 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 hg38 Primary Tumor C3N-02996-02 sample_tag=UNK_YEyWzRW Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA C3N-02997.MethArray.Green.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Grn.idat 13676221 IDAT Green 04eb4f3f-1ac9-49b7-beac-ebc4364957c2 e22f79cd5400d6dac6f0c00be930cb3b NA Primary Tumor C3N-02997-01 sample_tag=CORE_M8JZn2A local_meta=.core Duplicate item: PDA Pilot - core-derived DNA C3N-02997.MethArray.Red.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Red.idat 13676221 IDAT Red 4e98b347-eed9-4724-8824-d32228a344f2 58520673375a163f28fdf8461d115f8f NA Primary Tumor C3N-02997-01 sample_tag=CORE_M8JZn2A local_meta=.core Duplicate item: PDA Pilot - core-derived DNA C3N-02997.miRNA-Seq.T C3N-02997 PDA miRNA-Seq tumor CPT0187880020 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L002_R1_001.unaln.bam 188904182 BAM NA 5fb3c51f-52b9-41eb-b307-2369ec7c2914 55bd82edcadd64481ceda6ba757420a6 NA Primary Tumor C3N-02997-01 @@ -37627,9 +37636,13 @@ C3N-03788.MethArray.Green.T C3N-03788 GBM Methylation Array tumor CPT0457770011 C3N-03788.MethArray.Red.T C3N-03788 GBM Methylation Array tumor CPT0457770011 206250290128_R07C01_Red.idat 13677950 IDAT Red c88b0907-bfc3-42fb-81d1-b8f069fc9c85 7ac51ce78eaa54f0509518b40ca3d1c3 NA Primary Tumor C3N-03788-03 C3N-03788.miRNA-Seq.T C3N-03788 GBM miRNA-Seq tumor CPT0457770008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTCAGA_S8_L003_R1_001.unaln.bam 381775024 BAM NA df8726e2-4517-4a7a-bdaf-9289ab6ad3f5 3ecb5f14597b720c4de18afc61cf8f8a NA Primary Tumor C3N-03788-03 C3N-03788.miRNA-Seq.T.hg38 C3N-03788 GBM miRNA-Seq tumor CPT0457770008 d8197cf6-869b-455b-b0ac-00d34a7e3eb6_mirnaseq_gdc_realn.bam 443353789 BAM NA d4df0370-29b4-4b40-b64d-c07638d547b4 5ee687f137f09c2ce42fda76d035aa94 hg38 Primary Tumor C3N-03788-03 +C3N-03788.RNA-Seq.chimeric.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.chimeric.gdc_realn.bam 796437541 BAM chimeric ee80ea15-041b-44ee-9240-9bd2207ea2dd 2aa671cfb9e467689e93ec49093de3cb hg38 Primary Tumor C3N-03788-03 +C3N-03788.RNA-Seq.genomic.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.genomic.gdc_realn.bam 7373308494 BAM genomic cfed8718-d98a-4b7a-bba2-7ca5fbbcfe9f c5988349f1b1ac85d9bcf8712fb07c34 hg38 Primary Tumor C3N-03788-03 C3N-03788.RNA-Seq.R1.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R1_001.fastq.gz 3600988531 FASTQ NA 384ad3cb-eafa-44e5-b6bd-6668d2cbf435 d4637272b0fb6f91adfeb3cb94b7525e NA Primary Tumor C3N-03788-03 C3N-03788.RNA-Seq.R2.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R2_001.fastq.gz 3808720166 FASTQ NA 8ea7fb5a-7ab8-4ce4-bf91-abeb62546d76 29397817e7be40c6146805e5c326309c NA Primary Tumor C3N-03788-03 +C3N-03788.RNA-Seq.transcriptome.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.transcriptome.gdc_realn.bam 7571693638 BAM transcriptome 48973af3-bff5-47d4-932a-af8466b1a338 f6e0095a589476561d2c936afecbc28e hg38 Primary Tumor C3N-03788-03 C3N-03788.WGS.N C3N-03788 GBM WGS blood_normal CPT0457870001 CPT0457870001.WholeGenome.RP-2158.bam 62556087199 BAM NA 29306a95-3819-46f2-8462-a99e2addd672 5c283d67b8d7157c2d0e37de16aca6c1 hg19 Blood Derived Normal C3N-03788-31 +C3N-03788.WGS.T C3N-03788 GBM WGS tumor CPT0457770011 CPT0457770011.WholeGenome.RP-2158.bam 120084054423 BAM NA 112eecb3-e804-41e8-be96-3ad019bc58ec 64ff6971acadb7ec90b0b85f26b13ea4 hg19 Primary Tumor C3N-03788-03 C3N-03789.MethArray.Green.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Grn.idat 13677905 IDAT Green 36949622-9245-4639-adbb-5d3825974411 b2699c6a827038d7e364e088d58b08b0 NA Primary Tumor C3N-03789-05 C3N-03789.MethArray.Red.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Red.idat 13677905 IDAT Red 801da269-0c53-48e6-9335-e70300569747 4458434e8c9e1e9ee42b9674d717f239 NA Primary Tumor C3N-03789-05 C3N-03789.miRNA-Seq.T C3N-03789 GBM miRNA-Seq tumor CPT0244860009 200403_UNC31-K00269_0274_AHCF7GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 225451718 BAM NA b660df27-cdb3-4bb7-960c-cd23e8296233 ff52890e8305588e649255f692288db9 NA Primary Tumor C3N-03789-05 diff --git a/Catalog3/CPTAC3.Catalog3.tsv b/Catalog3/CPTAC3.Catalog3.tsv index 4525c86..5cbdbc9 100644 --- a/Catalog3/CPTAC3.Catalog3.tsv +++ b/Catalog3/CPTAC3.Catalog3.tsv @@ -1,40449 +1,40468 @@ dataset_name case disease experimental_strategy sample_type specimen_name filename filesize data_format data_variety alignment project uuid md5 metadata -11LU013.MethArray.Green.T 11LU013 LUAD Methylation_Array tumor CPT0053040010 202176300111_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2ddd5fb8-54c2-4423-8e3c-51aa0fab87fe d9307aaeff5e7e26e023bfa8a79f94be {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor"} -11LU013.MethArray.Red.T 11LU013 LUAD Methylation_Array tumor CPT0053040010 202176300111_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 ece74f1e-055e-4fe0-8f5c-f971f331a103 18000d1b494085be685f110d3c37843a {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor"} -11LU013.miRNA-Seq.S28_L007_R1.T 11LU013 LUAD miRNA-Seq tumor CPT0053040007 181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L007_R1_001.unaln.bam 200267355 BAM S28_L007_R1 unaligned CPTAC3 422fd8f3-6a86-4ea8-a958-11eee7f05d06 7c4c68927aa7bb724ee4a4a301565191 {"aliquot_tag": "ALQ_a2b7857", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU013.miRNA-Seq.T.hg38 11LU013 LUAD miRNA-Seq tumor CPT0053040007 c99f30c5-cdd0-47b7-be22-b271c6c02124_mirnaseq_gdc_realn.bam 219234487 BAM harmonized CPTAC3 5cfe8c2c-6be5-4091-8997-3e0faf62ed83 4771396f8ed6db49384bbff636cc42d1 {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor"} -11LU013.RNA-Seq.chimeric.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.chimeric.gdc_realn.bam 254406270 BAM chimeric harmonized CPTAC3 55246224-11c0-415d-bd2f-06fd7cb53a16 f8a8550f7963d18257fdb8f5794976e7 {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor"} -11LU013.RNA-Seq.genomic.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.genomic.gdc_realn.bam 8729271900 BAM genomic harmonized CPTAC3 f4b41880-7801-486f-add7-651abe8201fb e931fc8cda5a76149e1649e7dbd57915 {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor"} -11LU013.RNA-Seq.S20_L005_R1.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R1_001.fastq.gz 4303659823 FASTQ S20_L005_R1 unaligned CPTAC3 c01167e5-f61b-4816-8910-97d5f225122d 02f9a9654c38233f5db3e233042b4a9a {"aliquot_tag": "ALQ_a2b7857", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU013.RNA-Seq.S20_L005_R2.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R2_001.fastq.gz 4658332238 FASTQ S20_L005_R2 unaligned CPTAC3 94a49466-5947-4dce-b1cb-616d50b84046 2a1ce1585265097c8591930b4431ec8f {"aliquot_tag": "ALQ_a2b7857", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -11LU013.RNA-Seq.transcriptome.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.transcriptome.gdc_realn.bam 11774516982 BAM transcriptome harmonized CPTAC3 273e17dd-68b8-4930-8946-52b721114171 0c90eff0db42aa32269980d45822ba0a {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor"} -11LU013.WGS.N 11LU013 LUAD WGS blood_normal CPT0040210002 CPT0040210002.WholeGenome.RP-1303.bam 63400815626 BAM aligned CPTAC3 44a17830-c27e-4c78-8754-0c0aa33ac33a 9f0120b2113fd9041bca569fe2462a87 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal"} -11LU013.WGS.N.hg38 11LU013 LUAD WGS blood_normal CPT0040210002 e04e7004-0cc8-42d0-9276-a290b24940ce_gdc_realn.bam 96565337883 BAM harmonized CPTAC3 89783e46-3269-42ad-8b4a-6b3de3fd47dc e71dbb924769e7145f4c80760b953d05 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal"} -11LU013.WGS.T 11LU013 LUAD WGS tumor CPT0053040010 CPT0053040010.WholeGenome.RP-1303.bam 87673499819 BAM aligned CPTAC3 5577f58b-1223-46da-8329-17df4700506c 27f2bb4e158490facee355fb469e4adf {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor"} -11LU013.WGS.T.hg38 11LU013 LUAD WGS tumor CPT0053040010 3e34414d-9614-4ad3-91e6-877b3758b5a1_gdc_realn.bam 132313633595 BAM harmonized CPTAC3 4b44af23-2fbe-4ff2-8f24-44080b6ec1d3 6ccb586d58ec437dc748cb423d8b07a0 {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor"} -11LU013.WXS.N 11LU013 LUAD WXS blood_normal CPT0040210002 CPT0040210002.WholeExome.RP-1303.bam 32888241174 BAM aligned CPTAC3 29f82e93-1da2-4c11-9cdb-5ee1aaf05549 0dcb3aa42e3fc50136ff87a763478695 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal"} -11LU013.WXS.N.hg38 11LU013 LUAD WXS blood_normal CPT0040210002 e04e7004-0cc8-42d0-9276-a290b24940ce_gdc_realn.bam 45154785185 BAM harmonized CPTAC3 91f48c07-d1a5-479b-9abe-06ec6218a849 8bcc571c9898af4f03fb042e2cf8c4d7 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal"} -11LU013.WXS.T 11LU013 LUAD WXS tumor CPT0053040010 CPT0053040010.WholeExome.RP-1303.bam 36146820337 BAM aligned CPTAC3 8f7864c6-eaaa-48b7-8aac-3c5d2dbe3ccb 78efa6cfe0e9d60c25b8ec5996e0913a {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor"} -11LU013.WXS.T.hg38 11LU013 LUAD WXS tumor CPT0053040010 3e34414d-9614-4ad3-91e6-877b3758b5a1_gdc_realn.bam 49316216018 BAM harmonized CPTAC3 54a37bf4-20a9-4e4d-ae09-567a67e5ff3d 68a83c8fbf14b838ed8a726664952425 {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor"} -11LU016.MethArray.Green.T 11LU016 LUAD Methylation_Array tumor CPT0052940010 202176300039_R03C01_Grn.idat 13676225 IDAT Green NA CPTAC3 ed984227-cba5-4d23-b3ae-5117d76c2c1c 93d77a11234a7a713f367a566ee6d1d3 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor"} -11LU016.MethArray.Red.T 11LU016 LUAD Methylation_Array tumor CPT0052940010 202176300039_R03C01_Red.idat 13676225 IDAT Red NA CPTAC3 d0c30a2b-fbfc-4f50-9aa2-bece1983c561 176dd33d90606344bc5e65df98620241 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor"} -11LU016.miRNA-Seq.S11_L006_R1.T 11LU016 LUAD miRNA-Seq tumor CPT0052940014 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L006_R1_001.unaln.bam 243245867 BAM S11_L006_R1 unaligned CPTAC3 d06b0f25-a5c1-4619-ada7-0e0ce91dc057 cf1f077583b09baa2ddf3a7f16ca3666 {"aliquot_tag": "ALQ_b4142d0", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU016.miRNA-Seq.T.hg38 11LU016 LUAD miRNA-Seq tumor CPT0052940014 fafce980-56e2-410d-b7ba-90dc0cba86d8_mirnaseq_gdc_realn.bam 266210538 BAM harmonized CPTAC3 ec8e6421-9f91-4a0b-a7cc-48ab55014c77 35898fe85e397f065fad089be49762e3 {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor"} -11LU016.RNA-Seq.chimeric.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.chimeric.gdc_realn.bam 59702054 BAM chimeric harmonized CPTAC3 d77e1d7a-c044-4132-aff0-bc40609cc581 7df7eb745b8ce3b7936ff553f0c7999f {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor"} -11LU016.RNA-Seq.genomic.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.genomic.gdc_realn.bam 9227315114 BAM genomic harmonized CPTAC3 6eee333f-eb7f-41a9-96e2-e090b6ad2a9c 69d3a869a930406f4d08e8d374c26c57 {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor"} -11LU016.RNA-Seq.S21_L006_R1.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 4031595548 FASTQ S21_L006_R1 unaligned CPTAC3 4c8f74a2-3b16-46cc-b859-a9ecf7b9a621 3b423efa3ffcfc25a5dfc57525867af6 {"aliquot_tag": "ALQ_b4142d0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU016.RNA-Seq.S21_L006_R2.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 4399145149 FASTQ S21_L006_R2 unaligned CPTAC3 7dbc18b1-12d7-4ba2-a87a-45c1e24d1e87 d52c47587cceea6adaf26d20ffdde53d {"aliquot_tag": "ALQ_b4142d0", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -11LU016.RNA-Seq.transcriptome.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.transcriptome.gdc_realn.bam 10083402963 BAM transcriptome harmonized CPTAC3 9b37937d-4cf6-456b-9f8c-010a4862304a e62715c19874557102307db1c18e7c9b {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor"} -11LU016.WGS.N 11LU016 LUAD WGS blood_normal CPT0037120002 CPT0037120002.WholeGenome.RP-1303.bam 65076536281 BAM aligned CPTAC3 aefcda0c-0224-4091-a489-f65fd1bb84a7 09b64fbeb7288371e7a90e1f590997f7 {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal"} -11LU016.WGS.N.hg38 11LU016 LUAD WGS blood_normal CPT0037120002 b200ba63-b414-4169-8712-eb726c784613_gdc_realn.bam 96485032091 BAM harmonized CPTAC3 e7d08220-93aa-4182-a19f-6ea9267b6ce8 35bd20a9b59b84b78df97b776d71ec69 {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal"} -11LU016.WGS.T 11LU016 LUAD WGS tumor CPT0052940010 CPT0052940010.WholeGenome.RP-1303.bam 86352420425 BAM aligned CPTAC3 60f4cd71-0a61-4c5b-931b-bdf79369b5ac ceaf4bb97b4639b41df27e193a905b9b {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor"} -11LU016.WGS.T.hg38 11LU016 LUAD WGS tumor CPT0052940010 e99345ff-01f8-4063-b178-d8e86181288c_gdc_realn.bam 127893888207 BAM harmonized CPTAC3 81eb34f5-f0af-4a2e-a4f4-4f5bcf07a91b 5b997ca99a9718f6d694b9e6e9cb4a56 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor"} -11LU016.WXS.N 11LU016 LUAD WXS blood_normal CPT0037120002 CPT0037120002.WholeExome.RP-1303.bam 26680468195 BAM aligned CPTAC3 099b3bdc-3df6-4ec4-93ac-6287a67734bc 2873a1b3f857354457a8b6a60568f6ad {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal"} -11LU016.WXS.N.hg38 11LU016 LUAD WXS blood_normal CPT0037120002 b200ba63-b414-4169-8712-eb726c784613_gdc_realn.bam 36299521229 BAM harmonized CPTAC3 4b4f7205-7616-43b0-a170-3240eadf0681 59fe7bf9cfae8372ba7dfcbbb6adb5a1 {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal"} -11LU016.WXS.T 11LU016 LUAD WXS tumor CPT0052940010 CPT0052940010.WholeExome.RP-1303.bam 25728140319 BAM aligned CPTAC3 fcc8d0e0-5ddb-4c2f-806b-9ff4edfc0283 238fab784318692d8fc7c58b0cb4395f {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor"} -11LU016.WXS.T.hg38 11LU016 LUAD WXS tumor CPT0052940010 e99345ff-01f8-4063-b178-d8e86181288c_gdc_realn.bam 35226439856 BAM harmonized CPTAC3 2bc9c65b-3d97-4f0c-b76e-decfcbd14e77 a17c02bae4b55d97c29e5c253e28c844 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor"} -11LU022.MethArray.Green.T 11LU022 LUAD Methylation_Array tumor CPT0052170010 202163530120_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a3695058-a2da-4484-9514-615d62043da9 213c042dc65e2cc10c960d868abc30fe {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor"} -11LU022.MethArray.Red.T 11LU022 LUAD Methylation_Array tumor CPT0052170010 202163530120_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 290b9ac4-6b40-485d-abe5-0f4eb430d139 5fc3a8d51de42bbd4bc75cd27572665a {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor"} -11LU022.miRNA-Seq.S10_L006_R1.T 11LU022 LUAD miRNA-Seq tumor CPT0052170014 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L006_R1_001.unaln.bam 275659119 BAM S10_L006_R1 unaligned CPTAC3 396f9bae-72c6-445d-89fb-332a9b023628 458e971e86f11d9ed56a95ec04ff85b5 {"aliquot_tag": "ALQ_a0b2ba6d", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU022.miRNA-Seq.T.hg38 11LU022 LUAD miRNA-Seq tumor CPT0052170014 aba40a2f-6d06-4f27-88e5-132f94e4b169_mirnaseq_gdc_realn.bam 299307293 BAM harmonized CPTAC3 0a7d4109-2998-480d-8f40-10d3093d63ee dc3709c42057ccc566d941ba49c677d0 {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor"} -11LU022.RNA-Seq.chimeric.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.chimeric.gdc_realn.bam 46108124 BAM chimeric harmonized CPTAC3 10c840ad-128a-4902-9b06-506ac4d77b25 fb9dc71e6dd6d2d68c7f51165533216e {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor"} -11LU022.RNA-Seq.genomic.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.genomic.gdc_realn.bam 9052031834 BAM genomic harmonized CPTAC3 0af6d9c6-c205-4b2f-9fd2-949dcd9e9f77 93d0ebe91f162ca62f547779990e16ee {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor"} -11LU022.RNA-Seq.S22_L006_R1.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4126753330 FASTQ S22_L006_R1 unaligned CPTAC3 34d25352-c90a-4cf6-b61a-5d2f4666fa52 9971f48e1eef7d42debe3d1e7e54b095 {"aliquot_tag": "ALQ_a0b2ba6d", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU022.RNA-Seq.S22_L006_R2.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4493136826 FASTQ S22_L006_R2 unaligned CPTAC3 f0b0ceaf-55a7-4f73-839b-f9ff940eefdc d3b1e90b40bb3a647be0e9bb49002fba {"aliquot_tag": "ALQ_a0b2ba6d", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -11LU022.RNA-Seq.transcriptome.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.transcriptome.gdc_realn.bam 10587229256 BAM transcriptome harmonized CPTAC3 8677e614-683a-41e8-8486-aea5896632b9 9871b60a3869ba0c8c411b1913d1a0b9 {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor"} -11LU022.WGS.N 11LU022 LUAD WGS blood_normal CPT0038140002 CPT0038140002.WholeGenome.RP-1303.bam 63381145020 BAM aligned CPTAC3 368aff0a-d15f-49bd-b9d1-bb8583f037e7 76532fc386663ff7cc02ee8eeb196ac0 {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal"} -11LU022.WGS.N.hg38 11LU022 LUAD WGS blood_normal CPT0038140002 db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 95326322818 BAM harmonized CPTAC3 43393979-50c9-44e3-b75c-6792b1a20300 f7fd1ed4e5527727e41947713516a6eb {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal"} -11LU022.WGS.T 11LU022 LUAD WGS tumor CPT0052170010 CPT0052170010.WholeGenome.RP-1303.bam 91490629292 BAM aligned CPTAC3 6929e1e5-5f8f-4bed-adf7-741aeed44f85 f6c0950a08f5514b149da3e17b01b1bd {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor"} -11LU022.WGS.T.hg38 11LU022 LUAD WGS tumor CPT0052170010 1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 137841436758 BAM harmonized CPTAC3 bf94c671-5d26-4691-836c-1e89eab4adce 4aa75ed11b4382bb3887eb1fa56e518a {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor"} -11LU022.WXS.N 11LU022 LUAD WXS blood_normal CPT0038140002 CPT0038140002.WholeExome.RP-1303.bam 29473604295 BAM aligned CPTAC3 e63c4ef2-96d1-4054-9b8e-2b289edcfa5a 209d3a8f4cfa7267ed361511d91ffec1 {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal"} -11LU022.WXS.N.hg38 11LU022 LUAD WXS blood_normal CPT0038140002 db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 40504340932 BAM harmonized CPTAC3 afd56e8e-f82d-4fb1-b019-2b032c763b85 ffaf8a4fa08634b783faef7f89f50435 {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal"} -11LU022.WXS.T 11LU022 LUAD WXS tumor CPT0052170010 CPT0052170010.WholeExome.RP-1303.bam 28330934233 BAM aligned CPTAC3 c16296d2-2905-4ffd-a2ae-78e633da41b8 7705d783ff3553286142e89c33f813f3 {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor"} -11LU022.WXS.T.hg38 11LU022 LUAD WXS tumor CPT0052170010 1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 38175893642 BAM harmonized CPTAC3 8466e786-5981-421d-ab9a-a6553c5c8285 2e1c2e90519444ded5273a5a969a8407 {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor"} -11LU035.DUP_2bb40b73.WGS.T 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM aligned CPTAC3 c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -11LU035.DUP_2bb40b73.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM harmonized CPTAC3 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -11LU035.MethArray.Green.T 11LU035 LUAD Methylation_Array tumor CPT0051690010 202178770083_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 25cc7309-ee8a-48d8-8fbb-70cd964f6a1d 522d9ff949793e9570ffc3ce07f0297b {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor"} -11LU035.MethArray.Red.T 11LU035 LUAD Methylation_Array tumor CPT0051690010 202178770083_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 6b3c3944-68ae-40fd-b2ba-fdd81987c209 89a9dd12542058b29e141aee46a28f1c {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor"} -11LU035.miRNA-Seq.S29_L007_R1.T 11LU035 LUAD miRNA-Seq tumor CPT0051690007 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L007_R1_001.unaln.bam 205078054 BAM S29_L007_R1 unaligned CPTAC3 cc308aa7-1870-40e8-bb76-17dc251cae90 ddb4ac28d86cb306dfa20ad9dd6ee61d {"aliquot_tag": "ALQ_b37d4ed2", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU035.miRNA-Seq.T.hg38 11LU035 LUAD miRNA-Seq tumor CPT0051690007 834f8510-5890-4124-912e-192ee6bb31ea_mirnaseq_gdc_realn.bam 228321743 BAM harmonized CPTAC3 638ed836-c7f7-4610-9e1f-d4ee8311cb41 526a56bc331a315c14cab88dbbe3eba6 {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor"} -11LU035.RNA-Seq.chimeric.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.chimeric.gdc_realn.bam 314558536 BAM chimeric harmonized CPTAC3 83fbf7d4-dc37-478f-b0b4-e6d42bbc6446 a034e575ea3a0699b6b378793772f185 {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor"} -11LU035.RNA-Seq.genomic.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.genomic.gdc_realn.bam 6826942393 BAM genomic harmonized CPTAC3 581198f7-a5bb-48a1-8d3b-9178e2acc76e cb2e443afe10b015ca2edb3b5828bc8f {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor"} -11LU035.RNA-Seq.S3_L006_R1.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R1_001.fastq.gz 3301808869 FASTQ S3_L006_R1 unaligned CPTAC3 a4928a2b-40a7-4b3b-9215-6c18d7837f81 d6293df171e9d5fa20250fd11ebd3ce6 {"aliquot_tag": "ALQ_b37d4ed2", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -11LU035.RNA-Seq.S3_L006_R2.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R2_001.fastq.gz 3590554117 FASTQ S3_L006_R2 unaligned CPTAC3 927e1a09-f4ff-462b-a771-23f82da02ac1 c90ea00f8e66514d41f005e20adf1de5 {"aliquot_tag": "ALQ_b37d4ed2", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -11LU035.RNA-Seq.transcriptome.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.transcriptome.gdc_realn.bam 9284220107 BAM transcriptome harmonized CPTAC3 426ec756-7bc8-4167-8024-ddd61fc3af03 411c36fe376e951d98e0ecfd33f1cfd0 {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor"} -11LU035.WGS.N 11LU035 LUAD WGS blood_normal CPT0034540002 CPT0034540002.WholeGenome.RP-1303.bam 63978250331 BAM aligned CPTAC3 09e8a72a-fa82-407e-b236-d3b502d695b6 1aa49f631002f8912a2a6f9988ecb0a0 {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal"} -11LU035.WGS.N.hg38 11LU035 LUAD WGS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 97616909143 BAM harmonized CPTAC3 051bf441-b940-4e4b-95a9-86f8f892090c 32790a3f4a9a5734fa765782c4bc1a42 {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal"} -11LU035.WGS.T 11LU035 LUAD WGS tumor CPT0051690010 CPT0051690010.WholeGenome.RP-1303.bam 74480616961 BAM aligned CPTAC3 0b0c0e88-1aa3-44f5-a012-1510e623540a 6e4ccb5b5f85cbf312ad1f091c6434b4 {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor"} -11LU035.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010 e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 113280187604 BAM harmonized CPTAC3 83b77360-ef94-43ea-9ac2-7229808e2512 b189b1c9f7d0de556e9cde70d6afa3fc {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor"} -11LU035.WXS.N 11LU035 LUAD WXS blood_normal CPT0034540002 CPT0034540002.WholeExome.RP-1303.bam 42687240835 BAM aligned CPTAC3 fc4c8b93-f6d9-4662-b524-66384d0666ed ac0049c8469d1f6adf872b0b9ed56c1a {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal"} -11LU035.WXS.N.hg38 11LU035 LUAD WXS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 58600852881 BAM harmonized CPTAC3 7ac15e13-9ad5-43ec-9ab4-85844b7d218b ba6f9157169f002d0e08e52f9e8cadab {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal"} -11LU035.WXS.T 11LU035 LUAD WXS tumor CPT0051690010 CPT0051690010.WholeExome.RP-1303.bam 27791488684 BAM aligned CPTAC3 356fcdf9-26cc-449f-a484-19e036aa9101 cb7bd87e3a98b5152d636af9eb322240 {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor"} -11LU035.WXS.T.hg38 11LU035 LUAD WXS tumor CPT0051690010 e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 38318471577 BAM harmonized CPTAC3 2e9b2402-dc62-4923-8447-f78414eee9d8 ca4f23ccc40c1e76c40247405fc40d57 {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor"} -C1230738.DUP_eb44394c.MethArray.Green.T C1230738 GBM Methylation_Array tumor 7316UP-2837 205707890073_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6a93a1a5-d1e4-44fd-911f-e0ec24aba2f7 f285f94bd015d1bca9869e6bce52c1d9 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1230738.DUP_eb44394c.MethArray.Red.T C1230738 GBM Methylation_Array tumor 7316UP-2837 205707890073_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 ac35ebec-0748-4db0-a74d-1fecfae94bef b7ac056caac1e124cd2cad3e10c1e398 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1230738.DUP_eb44394c.WGS.T C1230738 GBM WGS tumor 7316UP-2837 7316UP-2837.WholeGenome.RP-2158.bam 69746897192 BAM aligned CPTAC3 f35a206c-e451-4218-9c40-07dd239012b8 aac0b7f9c5c1cdc413ff818d5f79cfe3 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1230738.DUP_eb44394c.WGS.T.hg38 C1230738 GBM WGS tumor 7316UP-2837 062a4cb7-1a73-4382-9f16-fdd891218a97_wgs_gdc_realn.bam 201008105730 BAM harmonized CPTAC3 49344d55-2c3a-412b-910b-1faebfcea48d 5dc96a48b2b4f9f17fa5fc7b1e4560f5 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1230738.DUP_eb44394c.WXS.T C1230738 GBM WXS tumor 7316UP-2837 7316UP-2837.WholeExome.RP-1303.bam 25636693051 BAM aligned CPTAC3 f1e8f2ec-063c-4de6-9ed2-86f00ad6d39e 7634a3d954df41c984b2399f460868bf {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1230738.DUP_eb44394c.WXS.T.hg38 C1230738 GBM WXS tumor 7316UP-2837 062a4cb7-1a73-4382-9f16-fdd891218a97_wxs_gdc_realn.bam 34561898412 BAM harmonized CPTAC3 f6c72dde-4426-4a98-9716-e4490b425df3 78f96737a8281fb8640fc18810963790 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1230738.DUP_fe862ae6.MethArray.Green.R C1230738 GBM Methylation_Array recurrent_tumor 7316UP-3741 205705520083_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c0969500-6f4e-4238-828a-79c4f1479b75 152fe8be73d3340d64c202ae82754c7b {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1230738.DUP_fe862ae6.MethArray.Red.R C1230738 GBM Methylation_Array recurrent_tumor 7316UP-3741 205705520083_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 bf3e1d3e-5796-47b1-866e-741021885bf1 08b96ccca58779e6d203477cd04704f1 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1230738.DUP_fe862ae6.WGS.R C1230738 GBM WGS recurrent_tumor 7316UP-3741 7316UP-3741.WholeGenome.RP-2158.bam 50417576165 BAM aligned CPTAC3 dd3fd775-330c-43c8-bfbc-5e0ab6dff59a b2adb45bf2f29c1d498bf730f5db9950 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1230738.DUP_fe862ae6.WGS.R.hg38 C1230738 GBM WGS recurrent_tumor 7316UP-3741 b8ffd3e5-14a9-4f6e-b750-9de2206ac247_wgs_gdc_realn.bam 152793323610 BAM harmonized CPTAC3 2bcaca05-b511-49e8-ac08-b3496d3823f6 5112b6db93081efce8bdf4be1e53cd47 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1230738.DUP_fe862ae6.WXS.R C1230738 GBM WXS recurrent_tumor 7316UP-3741 7316UP-3741.WholeExome.RP-1303.bam 28694893121 BAM aligned CPTAC3 1d9c4ae4-85b5-4f7c-96d9-b0cf9ac46c84 508547b0d43977b0b8899528ce7c5155 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1230738.DUP_fe862ae6.WXS.R.hg38 C1230738 GBM WXS recurrent_tumor 7316UP-3741 b8ffd3e5-14a9-4f6e-b750-9de2206ac247_wxs_gdc_realn.bam 38762633340 BAM harmonized CPTAC3 12adff22-d44c-42eb-bbfc-717e1e007fdc 5801c76b4fe444be84096b8c37a4fd19 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1230738.miRNA-Seq.R.hg38 C1230738 GBM miRNA-Seq recurrent_tumor 7316UP-3741-1104759 ca58d064-dbe4-4aff-aab1-a9e088d0b437_mirnaseq_gdc_realn.bam 170341951 BAM harmonized CPTAC3 43127eb1-0cb9-490e-b41a-be211f9f2c14 845f3a27a60b7695db365340b8e105ef {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor"} -C1230738.miRNA-Seq.S20_L001_R1.R C1230738 GBM miRNA-Seq recurrent_tumor 7316UP-3741-1104759 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L001_R1_001.unaln.bam 148674938 BAM S20_L001_R1 unaligned CPTAC3 75b31b5b-5e92-4c02-b477-2a372ee0ace1 44d6d72feeb2b3f78c77eec3c2fc474f {"aliquot_tag": "ALQ_d584ef16", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C1230738.miRNA-Seq.S6_L003_R1.T C1230738 GBM miRNA-Seq tumor 7316UP-2837-1104818 210817_UNC31-K00269_0302_AHLCTHBBXY_CACGAT_S6_L003_R1_001.unaln.bam 343545469 BAM S6_L003_R1 unaligned CPTAC3 36541208-7a9e-4320-bc15-c46bb9f0f472 e6a1251e8ab524a477e467c69f86b31b {"aliquot_tag": "ALQ_542887e3", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C1230738.miRNA-Seq.T.hg38 C1230738 GBM miRNA-Seq tumor 7316UP-2837-1104818 d5e99f68-1f9f-4206-83cf-d3d07f211362_mirnaseq_gdc_realn.bam 391240415 BAM harmonized CPTAC3 a06b121d-b515-4282-a75b-2928ebf75b52 69317c5d14c14e7b99ef1b657c87b8ca {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor"} -C1230738.RNA-Seq.chimeric.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.chimeric.gdc_realn.bam 95280051 BAM chimeric harmonized CPTAC3 2ae2966e-3642-4051-a775-6bb81f8aca1c d46625616304afc319565c88ef68a372 {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor"} -C1230738.RNA-Seq.chimeric.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.chimeric.gdc_realn.bam 71224577 BAM chimeric harmonized CPTAC3 d259f7fe-98e4-4650-9f9b-084a3335a069 90fb1b0cd29b0ddfb6342f71921660f4 {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor"} -C1230738.RNA-Seq.genomic.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.genomic.gdc_realn.bam 7653991217 BAM genomic harmonized CPTAC3 9d98c7a5-8279-40d9-9eb2-180fbe9a1393 2043e52c870ba6df76b366db67e8dd29 {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor"} -C1230738.RNA-Seq.genomic.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.genomic.gdc_realn.bam 7822256033 BAM genomic harmonized CPTAC3 5b01e091-a339-4f18-b246-8998deb25060 2a1cbcf816b58b7450790b8eee2f1143 {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor"} -C1230738.RNA-Seq.S14_L004_R1.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R1_001.fastq.gz 3719032466 FASTQ S14_L004_R1 unaligned CPTAC3 a0573c53-73bc-4841-8fb6-e5ae0bf87740 d4af0cbb6491f7ca2f9d04d7eae96f00 {"aliquot_tag": "ALQ_d584ef16", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C1230738.RNA-Seq.S14_L004_R2.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R2_001.fastq.gz 4079189731 FASTQ S14_L004_R2 unaligned CPTAC3 eb68c408-9b99-4474-a4aa-8e8282e65874 145c7446121fca6bc55785db95e22245 {"aliquot_tag": "ALQ_d584ef16", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C1230738.RNA-Seq.S21_L006_R1.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R1_001.fastq.gz 3446087771 FASTQ S21_L006_R1 unaligned CPTAC3 bcedfbaa-90dd-4081-8704-a1cb34ec9275 232051111d19440ee5851807edaf351c {"aliquot_tag": "ALQ_542887e3", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C1230738.RNA-Seq.S21_L006_R2.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R2_001.fastq.gz 3752803777 FASTQ S21_L006_R2 unaligned CPTAC3 455058a8-b378-4ffa-9f8f-0726862855e4 b562d3358ba8bb38d56a2002bd651b26 {"aliquot_tag": "ALQ_542887e3", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C1230738.RNA-Seq.transcriptome.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.transcriptome.gdc_realn.bam 13606920308 BAM transcriptome harmonized CPTAC3 194a9653-8758-4751-9efc-c6b3c36d412a ac98c00524ac9a8732c9dc1f7155e0b4 {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor"} -C1230738.RNA-Seq.transcriptome.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.transcriptome.gdc_realn.bam 11279278020 BAM transcriptome harmonized CPTAC3 ca011220-cb7d-4464-8263-53450eb3f42f 4a3f94d5f5123ab9e1f143b96c6a2699 {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor"} -C1230738.WGS.N C1230738 GBM WGS blood_normal 7316UP-2837-1105281 7316UP-2837-1105281.WholeGenome.RP-2158.bam 49814298292 BAM aligned CPTAC3 a9630601-73b3-4447-bcaf-0ef5d48a7afd 0623cc8c784793913037eae198a764e8 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal"} -C1230738.WGS.N.hg38 C1230738 GBM WGS blood_normal 7316UP-2837-1105281 50a02e53-a4d7-4e01-9505-1321cc9f0e32_wgs_gdc_realn.bam 145688610322 BAM harmonized CPTAC3 91fdb084-280b-4301-a2dd-9ebd845f862c e2087e6e30b5a27eb836770fa5f53611 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal"} -C1230738.WGS.T C1230738 GBM WGS tumor 7316UP-2837-1105198 7316UP-2837-1105198.WholeGenome.RP-2158.bam 63902215677 BAM aligned CPTAC3 49dc59e8-8e4b-4ee7-8da5-c8741457b41b ccdc01fe3bae129c5221dea16cd37526 {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor"} -C1230738.WGS.T.hg38 C1230738 GBM WGS tumor 7316UP-2837-1105198 aee72b24-81c3-47b5-856d-35ff22208f84_wgs_gdc_realn.bam 187148349528 BAM harmonized CPTAC3 4f59cd18-e160-40bc-b20f-d9b6d6b2a828 0ee0bcfcdbf5558a7e7f940cd7d57fc8 {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor"} -C1230738.WXS.N C1230738 GBM WXS blood_normal 7316UP-2837-1105281 7316UP-2837-1105281.WholeExome.RP-1303.bam 24752739546 BAM aligned CPTAC3 7c45e702-2e8c-4706-8e0a-f0c5a02d8883 6097b06f8e45394823438e12bf5abba6 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal"} -C1230738.WXS.N.hg38 C1230738 GBM WXS blood_normal 7316UP-2837-1105281 50a02e53-a4d7-4e01-9505-1321cc9f0e32_wxs_gdc_realn.bam 33591352572 BAM harmonized CPTAC3 55926090-7cd6-4cf3-b401-206767350691 2e85996c8fe1d3cd2479378893753e45 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal"} -C1230738.WXS.T C1230738 GBM WXS tumor 7316UP-2837-1105198 7316UP-2837-1105198.WholeExome.RP-1303.bam 25663974485 BAM aligned CPTAC3 1dfde80e-ad35-4698-8708-833ed9db67b4 e93bb4dfc367431c05478c8e10a3ac2c {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor"} -C1230738.WXS.T.hg38 C1230738 GBM WXS tumor 7316UP-2837-1105198 aee72b24-81c3-47b5-856d-35ff22208f84_wxs_gdc_realn.bam 34971128893 BAM harmonized CPTAC3 b06c50fe-383f-4cce-a9b0-9f70f118d5e0 b68b3a59d8e6701a491f122a7771841a {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor"} -C1245129.DUP_bede5e24.MethArray.Green.R C1245129 GBM Methylation_Array recurrent_tumor 7316UP-3639 205854140168_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 729f75e3-173c-4573-a673-93b8ec3f9dd8 2d82e384b86dd99d081acae15155165d {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1245129.DUP_bede5e24.MethArray.Red.R C1245129 GBM Methylation_Array recurrent_tumor 7316UP-3639 205854140168_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 eef47373-b2a6-4bad-bafe-96fb3b8d1be2 c0decb4b2ff29ef67bfbcfd2f6b87860 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1245129.DUP_bede5e24.WGS.R C1245129 GBM WGS recurrent_tumor 7316UP-3639 7316UP-3639.WholeGenome.RP-2158.bam 54503635300 BAM aligned CPTAC3 bde92380-6a06-432a-8937-9558526363bd fcf78917dfc26a68ec0d369fd4ae64d3 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1245129.DUP_bede5e24.WGS.R.hg38 C1245129 GBM WGS recurrent_tumor 7316UP-3639 aae8553d-f3af-44ff-a229-af238c3646a9_wgs_gdc_realn.bam 163737938502 BAM harmonized CPTAC3 7ecdf616-2ad4-454c-bbac-5ebe26cfe88e 695ece41ede6417f77b7e37cb61c7d82 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1245129.DUP_bede5e24.WXS.R C1245129 GBM WXS recurrent_tumor 7316UP-3639 7316UP-3639.WholeExome.RP-1303.bam 33535885886 BAM aligned CPTAC3 67022a09-c8a0-42f2-8a24-975f86875723 e5d125c5c765b8003ae640b7bd930b11 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1245129.DUP_bede5e24.WXS.R.hg38 C1245129 GBM WXS recurrent_tumor 7316UP-3639 aae8553d-f3af-44ff-a229-af238c3646a9_wxs_gdc_realn.bam 45396231257 BAM harmonized CPTAC3 aaa8082f-1261-406c-a1a2-cee82991b186 fda1ed76057e788d18c3e3ca4920ddb6 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C1245129.DUP_f4f0a623.MethArray.Green.T C1245129 GBM Methylation_Array tumor 7316UP-2923 205705520055_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 29018c15-545a-40ad-a61a-afb48a872f13 cdc4611636222a5d3113d3a2cd0599fd {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1245129.DUP_f4f0a623.MethArray.Red.T C1245129 GBM Methylation_Array tumor 7316UP-2923 205705520055_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 0e0d494c-fbb4-4174-9243-04f3da23d763 9cd8ef47603503a149d443bc8d61967c {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1245129.DUP_f4f0a623.WGS.T C1245129 GBM WGS tumor 7316UP-2923 7316UP-2923.WholeGenome.RP-2158.bam 68310898527 BAM aligned CPTAC3 9ea042b4-5220-487e-90c0-8b5fb62d514f a6c72432b14b5314b02d5c8c954c0d41 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1245129.DUP_f4f0a623.WGS.T.hg38 C1245129 GBM WGS tumor 7316UP-2923 5b739159-0dff-476e-932e-8198cb3c76e4_wgs_gdc_realn.bam 207756327142 BAM harmonized CPTAC3 f3c78e93-c869-4b25-b43b-eb115a89b242 7c377d8a6d5704601e24c58d20e27558 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1245129.DUP_f4f0a623.WXS.T C1245129 GBM WXS tumor 7316UP-2923 7316UP-2923.WholeExome.RP-1303.bam 27658601868 BAM aligned CPTAC3 758f7bab-339d-4faa-882d-9bde7a947266 04368db0063df5781c5c208155946f11 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1245129.DUP_f4f0a623.WXS.T.hg38 C1245129 GBM WXS tumor 7316UP-2923 5b739159-0dff-476e-932e-8198cb3c76e4_wxs_gdc_realn.bam 37402084587 BAM harmonized CPTAC3 9e05a653-da61-49f4-b2a7-b58f4781e760 7bec7856621541c16a5ef928197fec98 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C1245129.miRNA-Seq.S25_L002_R1.T C1245129 GBM miRNA-Seq tumor 7316UP-2923-1104788 210817_UNC31-K00269_0302_AHLCTHBBXY_ATCACG_S25_L002_R1_001.unaln.bam 170850244 BAM S25_L002_R1 unaligned CPTAC3 4c6f9c29-cffd-4122-9105-749f5f157cbf d6b5cf48ec736a8c0b3ba8b4cea74bc2 {"aliquot_tag": "ALQ_fd169e65", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C1245129.miRNA-Seq.T.hg38 C1245129 GBM miRNA-Seq tumor 7316UP-2923-1104788 84c32801-ffb5-4041-afc7-b5d3d0d2662c_mirnaseq_gdc_realn.bam 199065248 BAM harmonized CPTAC3 6c761508-f62b-42c9-9d63-ade01e856e12 5275486da0bfc9fc0cf618650b754f6a {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor"} -C1245129.RNA-Seq.chimeric.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.chimeric.gdc_realn.bam 119660118 BAM chimeric harmonized CPTAC3 dad645e8-a9e1-4869-8815-29bcee15350a 3c1984a4f0a7dea71ea76ba4b1f7a8db {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor"} -C1245129.RNA-Seq.genomic.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.genomic.gdc_realn.bam 8972721168 BAM genomic harmonized CPTAC3 dba372d2-a95c-4f22-b47a-eb7be11c2041 28451c204fd1f145d8bfb1911b5e86ef {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor"} -C1245129.RNA-Seq.S5_L002_R1.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4113617678 FASTQ S5_L002_R1 unaligned CPTAC3 9146c2dd-2d86-4d94-8fc4-b913e7ad8216 4886899a6f2dd2b1dcf557ce3b7e98ff {"aliquot_tag": "ALQ_fd169e65", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C1245129.RNA-Seq.S5_L002_R2.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4453892311 FASTQ S5_L002_R2 unaligned CPTAC3 8f848e37-a739-4737-82e9-8773182905fa c6c2a80a3e779d7abedf6589df2750dc {"aliquot_tag": "ALQ_fd169e65", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C1245129.RNA-Seq.transcriptome.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.transcriptome.gdc_realn.bam 19705646268 BAM transcriptome harmonized CPTAC3 8e7327de-3be5-4c40-8956-c72db85c5097 23b41c6100ce50bc120f7b2bc2cddf11 {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor"} -C1245129.WGS.N C1245129 GBM WGS blood_normal 7316UP-2923-1105282 7316UP-2923-1105282.WholeGenome.RP-2158.bam 48169949339 BAM aligned CPTAC3 b4c0b12c-e914-477c-a18e-ab5053ec2576 54ebe62fa736119316354b00a9f89dc6 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal"} -C1245129.WGS.N.hg38 C1245129 GBM WGS blood_normal 7316UP-2923-1105282 20c88342-81c8-4764-9735-20ad94c112dc_wgs_gdc_realn.bam 133936311434 BAM harmonized CPTAC3 d016185e-cf6e-4b21-9841-554ef3d18e7a 1557ae68c0a5250a68848461daba5399 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal"} -C1245129.WGS.T C1245129 GBM WGS tumor 7316UP-2923-1105251 7316UP-2923-1105251.WholeGenome.RP-2158.bam 62969913054 BAM aligned CPTAC3 ff7d7322-8f44-4cca-a899-bc04dbf62e37 1db7d752ce00873db0601bf84c662060 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor"} -C1245129.WGS.T.hg38 C1245129 GBM WGS tumor 7316UP-2923-1105251 fb858b07-76dc-48b4-9096-adb0aed38c31_wgs_gdc_realn.bam 182853426065 BAM harmonized CPTAC3 c12354a1-3d98-4407-b4c3-17e3acf05bf4 b94d52f3320ae92bd3e05f4f38eb43a0 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor"} -C1245129.WXS.N C1245129 GBM WXS blood_normal 7316UP-2923-1105282 7316UP-2923-1105282.WholeExome.RP-1303.bam 27679924367 BAM aligned CPTAC3 334eab09-2429-4ae9-9af9-293d49f76501 7d7a86c6c917c358db9576262890de67 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal"} -C1245129.WXS.N.hg38 C1245129 GBM WXS blood_normal 7316UP-2923-1105282 20c88342-81c8-4764-9735-20ad94c112dc_wxs_gdc_realn.bam 37470562835 BAM harmonized CPTAC3 db118e85-6218-469d-8655-42d3bf3b75ef c3f2de02733894527425f39467432a13 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal"} -C1245129.WXS.R C1245129 GBM WXS recurrent_tumor 7316UP-3639-1105256 7316UP-3639-1105256.WholeExome.RP-1303.bam 27204369067 BAM aligned CPTAC3 acb1e32e-2c88-4584-b71a-846497512ffd 2b0d84e73cb5774aff2cc45ab1a53135 {"aliquot_tag": "ALQ_63c631a8", "gdc_sample_type": "Recurrent Tumor"} -C1245129.WXS.R.hg38 C1245129 GBM WXS recurrent_tumor 7316UP-3639-1105256 b08780d1-2e5b-4dd7-86b3-f49441486e5f_wxs_gdc_realn.bam 36724219417 BAM harmonized CPTAC3 66a0d8b1-6281-4cdc-a867-8727a76e7962 77d34f1105314cafca557a26b8c127d7 {"aliquot_tag": "ALQ_63c631a8", "gdc_sample_type": "Recurrent Tumor"} -C1245129.WXS.T C1245129 GBM WXS tumor 7316UP-2923-1105251 7316UP-2923-1105251.WholeExome.RP-1303.bam 28736155132 BAM aligned CPTAC3 da97bd44-e486-4792-a8ec-76f714fdda25 c4588eb5fefc18bc280d869ae76ccf96 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor"} -C1245129.WXS.T.hg38 C1245129 GBM WXS tumor 7316UP-2923-1105251 fb858b07-76dc-48b4-9096-adb0aed38c31_wxs_gdc_realn.bam 39273198570 BAM harmonized CPTAC3 923cea70-4973-4a54-ad99-151028fe7669 13416529cba9464b6534908edfad00a7 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor"} -C204057.DUP_4a62de3d.miRNA-Seq.R.hg38 C204057 GBM miRNA-Seq recurrent_tumor 7316UP-662-1104774 60f1f3f8-fef8-45b2-beab-36c9291569e8_mirnaseq_gdc_realn.bam 606525934 BAM harmonized CPTAC3 d8dd1512-16f2-4b2d-81a2-b563e73cb9a4 00cbbda3a9d04359959c684b54bf7dae {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_4a62de3d.miRNA-Seq.S10_L001_R1.R C204057 GBM miRNA-Seq recurrent_tumor 7316UP-662-1104774 210817_UNC31-K00269_0302_AHLCTHBBXY_CATTTT_S10_L001_R1_001.unaln.bam 521415951 BAM S10_L001_R1 unaligned CPTAC3 8526c4eb-aaa0-4bb3-8812-56020639eb8b 5b7f1d2cfcbedc57992709d47484c72a {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_4a62de3d.RNA-Seq.chimeric.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.chimeric.gdc_realn.bam 101149130 BAM chimeric harmonized CPTAC3 f3cd4119-98cb-42d8-afd3-baf748aba113 69b68f372286292349146ffc08014616 {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_4a62de3d.RNA-Seq.genomic.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.genomic.gdc_realn.bam 8538882691 BAM genomic harmonized CPTAC3 2f69044c-80a0-4124-bcfa-77b65f6d2147 8f919ebf3674bb4667f5fa6171a8a35a {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_4a62de3d.RNA-Seq.S11_L003_R1.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R1_001.fastq.gz 3677881669 FASTQ S11_L003_R1 unaligned CPTAC3 0e05465c-1a40-4992-b207-86b0751b0fed 1c1742725730066771d56ceb3cd1f302 {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_4a62de3d.RNA-Seq.S11_L003_R2.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R2_001.fastq.gz 3967445180 FASTQ S11_L003_R2 unaligned CPTAC3 68b5d360-095b-4ca6-9658-6d780328b56f 54737ba751891af24d40b67fee0fec85 {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_4a62de3d.RNA-Seq.transcriptome.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.transcriptome.gdc_realn.bam 13237889741 BAM transcriptome harmonized CPTAC3 4b4b9a02-c1b9-4cc6-98e1-4be67f886c24 d101ba55cd060e00ce9c8708068490ff {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_970ef0d.WGS.R C204057 GBM WGS recurrent_tumor 7316UP-662-1105237 7316UP-662-1105237.WholeGenome.RP-2158.bam 50399269668 BAM aligned CPTAC3 79cfad83-3cab-4f9a-9d9d-df2bc48e331f 229958594d27f7254f9dec482a2d7e4d {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_970ef0d.WGS.R.hg38 C204057 GBM WGS recurrent_tumor 7316UP-662-1105237 3465d400-3fc4-410a-b8ba-df88867c8746_wgs_gdc_realn.bam 151816440796 BAM harmonized CPTAC3 abd63736-34f5-4b4c-85fb-337bc843b718 7d40faeafebc5e1ddbea600d30f9daf6 {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_970ef0d.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662-1105237 7316UP-662-1105237.WholeExome.RP-1303.bam 22253872234 BAM aligned CPTAC3 ba464092-6b3e-4c16-9ae5-b57c4cd4b9db b751f66d8a0940dc4aa1ff12a0a05616 {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_970ef0d.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662-1105237 3465d400-3fc4-410a-b8ba-df88867c8746_wxs_gdc_realn.bam 30036095166 BAM harmonized CPTAC3 f37d39a7-a7ad-4c33-a814-680141a6239f b50a855a58a38cfd164f8d07dbd28348 {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_abe8b610.MethArray.Green.R C204057 GBM Methylation_Array recurrent_tumor 7316UP-662 205555380040_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b8cabc20-fe7d-49bc-8f84-8cf4b686eadb 071e228dcf30aa7e5e017e8518d906d7 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_abe8b610.MethArray.Red.R C204057 GBM Methylation_Array recurrent_tumor 7316UP-662 205555380040_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 e5a0ec82-28df-4167-9ca1-8b10f616c777 de9ab024a1d7857561dd629748efe052 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_abe8b610.WGS.R C204057 GBM WGS recurrent_tumor 7316UP-662 7316UP-662.WholeGenome.RP-2158.bam 53133400430 BAM aligned CPTAC3 e6e7d712-5903-433f-8773-05a95164edd4 089467a5cca96d4323fa8041906f002f {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_abe8b610.WGS.R.hg38 C204057 GBM WGS recurrent_tumor 7316UP-662 7a8212fb-e9ec-4fd6-a169-7e943ce00917_wgs_gdc_realn.bam 157725120601 BAM harmonized CPTAC3 5d04ac45-7cb4-4c31-a169-fa49f15ff49b 9ffa39c134aec763b8230d503b3577b2 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_abe8b610.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662 7316UP-662.WholeExome.RP-1303.bam 13295977421 BAM aligned CPTAC3 940f4454-bee3-47bd-ae39-72c2b13c0ca8 19ee3e35dcca8e5720463f0e508fcae7 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_abe8b610.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662 7a8212fb-e9ec-4fd6-a169-7e943ce00917_wxs_gdc_realn.bam 18177857084 BAM harmonized CPTAC3 647e7ef3-b315-4885-b6eb-952d56aa1429 ac154d0d05621b157aa2b0475577ce77 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C204057.DUP_fb79d37d.MethArray.Green.T C204057 GBM Methylation_Array tumor 7316UP-302 205854150169_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9f1ca366-1265-475f-97c9-48b62502632d 946ffa94c50b57644f39a44d81ac8398 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C204057.DUP_fb79d37d.MethArray.Red.T C204057 GBM Methylation_Array tumor 7316UP-302 205854150169_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 d11a04a3-1094-4ba1-92b1-55e4e101485b 3d55405504538e7af602fc5faa60742b {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C204057.DUP_fb79d37d.WGS.T C204057 GBM WGS tumor 7316UP-302 7316UP-302.WholeGenome.RP-2158.bam 63043564130 BAM aligned CPTAC3 1a331d7c-1fdf-465a-8e6f-f0ea3e83c361 9f81c4d8a556b7dd7651381184fa2798 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C204057.DUP_fb79d37d.WGS.T.hg38 C204057 GBM WGS tumor 7316UP-302 b1b62bc9-91c7-416b-92c8-35f6e197980a_wgs_gdc_realn.bam 188708361770 BAM harmonized CPTAC3 589369f6-0b4f-4252-87e1-bdc4aa0a235d 8bad76a8e5cdaa5ee4dff62c9b86ecc7 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C204057.DUP_fb79d37d.WXS.T C204057 GBM WXS tumor 7316UP-302 7316UP-302.WholeExome.RP-1303.bam 26620556360 BAM aligned CPTAC3 fcdbdf5e-1e17-41ad-a0a0-1e91613c2e20 5b55167488303a570a6fe332955414ee {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C204057.DUP_fb79d37d.WXS.T.hg38 C204057 GBM WXS tumor 7316UP-302 b1b62bc9-91c7-416b-92c8-35f6e197980a_wxs_gdc_realn.bam 36138400689 BAM harmonized CPTAC3 6a93dee0-802a-47cc-90a5-37f686a9aebf 4b02bda3ae09d43d5883c49bcfc720f6 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C204057.miRNA-Seq.S3_L001_R1.T C204057 GBM miRNA-Seq tumor 7316UP-302-1104767 210817_UNC31-K00269_0302_AHLCTHBBXY_CAAAAG_S3_L001_R1_001.unaln.bam 509744176 BAM S3_L001_R1 unaligned CPTAC3 12cf72af-38ef-4d78-b56d-b92e82aa0f22 0dbd1e59b93dbb8604b58a45f7a3d254 {"aliquot_tag": "ALQ_b63962c3", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C204057.miRNA-Seq.T.hg38 C204057 GBM miRNA-Seq tumor 7316UP-302-1104767 c54cbbf3-bc52-456c-b6a8-983443eb9293_mirnaseq_gdc_realn.bam 582705856 BAM harmonized CPTAC3 023c8b7c-be32-4652-a82a-c9ad989327f8 d462fc3608c74e8888d022648d383c49 {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor"} -C204057.RNA-Seq.chimeric.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.chimeric.gdc_realn.bam 55525337 BAM chimeric harmonized CPTAC3 06f6e7eb-34b7-4119-8702-c03923b9ce1d fc708895f2bdc73179660bdec669b844 {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor"} -C204057.RNA-Seq.genomic.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.genomic.gdc_realn.bam 9177202279 BAM genomic harmonized CPTAC3 049ce0cf-c9c6-40e6-83e1-a52724f9426a 2398a3473950bb4854e9ae005610c3c0 {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor"} -C204057.RNA-Seq.S31_L008_R1.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 3528309965 FASTQ S31_L008_R1 unaligned CPTAC3 64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37 20ac0424955a7467b7fadccdcc466f33 {"aliquot_tag": "ALQ_b63962c3", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C204057.RNA-Seq.S31_L008_R2.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 3876277963 FASTQ S31_L008_R2 unaligned CPTAC3 8e892ebf-f748-4b16-b9fb-bad025c61d0b 3d8aa0695e65046ba351a65e72285d8b {"aliquot_tag": "ALQ_b63962c3", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C204057.RNA-Seq.transcriptome.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.transcriptome.gdc_realn.bam 14324601436 BAM transcriptome harmonized CPTAC3 5a8fdf6e-4cd1-4b7d-be7c-6dd79cbf286a 47eec3014922df7c5ef61caedd4655cc {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor"} -C204057.WGS.N C204057 GBM WGS blood_normal 7316UP-302-1105284 7316UP-302-1105284.WholeGenome.RP-2158.bam 51382775991 BAM aligned CPTAC3 4fcea472-64ed-4e2a-ad0b-832dd6fba527 8a2cd1f84171daff22db4280eb748a97 {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal"} -C204057.WGS.N.hg38 C204057 GBM WGS blood_normal 7316UP-302-1105284 881dda1b-14e9-4952-875d-033de239cc69_wgs_gdc_realn.bam 156336585636 BAM harmonized CPTAC3 355b4d9c-302a-4ac1-a27f-8f6c38ab51b1 3262c4134467a2b4675c0dd3ced1ee2f {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal"} -C204057.WGS.T C204057 GBM WGS tumor 7316UP-302-1105230 7316UP-302-1105230.WholeGenome.RP-2158.bam 49458426510 BAM aligned CPTAC3 d4819119-dcc7-45f5-8c8e-70624744ed84 5d733d33aaea6ad5b973cc65e66a45ce {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor"} -C204057.WGS.T.hg38 C204057 GBM WGS tumor 7316UP-302-1105230 73fbc689-0c62-4ccb-8aaf-6d3697fc06e1_wgs_gdc_realn.bam 148956827638 BAM harmonized CPTAC3 f1b9b874-d882-4b5b-9573-0bae4430d09b c07ed50271de01db0438a70627500071 {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor"} -C204057.WXS.N C204057 GBM WXS blood_normal 7316UP-302-1105284 7316UP-302-1105284.WholeExome.RP-1303.bam 23573196077 BAM aligned CPTAC3 8564b3ee-d4dc-4ba1-9752-4ecd0fdb35af df125056956ed2568efd200039ac6237 {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal"} -C204057.WXS.N.hg38 C204057 GBM WXS blood_normal 7316UP-302-1105284 881dda1b-14e9-4952-875d-033de239cc69_wxs_gdc_realn.bam 32070630898 BAM harmonized CPTAC3 0c1806b6-b54a-45ab-8f07-881b500abb78 cfb6f5816d8280e3eab16b93e8bd1f78 {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal"} -C204057.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662-1105227 7316UP-662-1105227.WholeExome.RP-1303.bam 27949418001 BAM aligned CPTAC3 79856ba8-1268-4a1f-b2c6-728e2191df5f 71cca779179fc942f22a0d4a871bd001 {"aliquot_tag": "ALQ_106bde4c", "gdc_sample_type": "Recurrent Tumor"} -C204057.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662-1105227 0f5d2f2b-4a5d-4e6f-bb16-f6e6775e77de_wxs_gdc_realn.bam 37856594228 BAM harmonized CPTAC3 87c465ee-3126-4912-a605-014c6495376e 15f5c8e13eef42d401e71828171b0cf2 {"aliquot_tag": "ALQ_106bde4c", "gdc_sample_type": "Recurrent Tumor"} -C204057.WXS.T C204057 GBM WXS tumor 7316UP-302-1105230 7316UP-302-1105230.WholeExome.RP-1303.bam 21477886080 BAM aligned CPTAC3 c42d58e9-87d7-434d-86d9-a8365d4d6f91 81d2e1d633bfe9d2321f7861e5e4d48f {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor"} -C204057.WXS.T.hg38 C204057 GBM WXS tumor 7316UP-302-1105230 73fbc689-0c62-4ccb-8aaf-6d3697fc06e1_wxs_gdc_realn.bam 29244557440 BAM harmonized CPTAC3 a3e622c4-b84b-41a3-810a-97bf521ba9a9 edb94b33da4781e99805e56a2b15e3de {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor"} -C207624.DUP_39bda097.MethArray.Green.R C207624 GBM Methylation_Array recurrent_tumor 7316UP-961 205705530002_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 55a73a6f-675b-45e4-8c6d-8d001ef6dcf7 38556dc7fa206d58684e1f6213c05659 {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C207624.DUP_39bda097.MethArray.Red.R C207624 GBM Methylation_Array recurrent_tumor 7316UP-961 205705530002_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 62e0eeb7-8d76-43c5-8383-c29d50644825 7fa0ebd2c193192003cb9af7b4c55f95 {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C207624.DUP_39bda097.WGS.R C207624 GBM WGS recurrent_tumor 7316UP-961 7316UP-961.WholeGenome.RP-2158.bam 48539159794 BAM aligned CPTAC3 daec3268-ea08-44c8-856f-f42bff316c6b f6638cdd41f767130800eedcb7e57caf {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C207624.DUP_39bda097.WGS.R.hg38 C207624 GBM WGS recurrent_tumor 7316UP-961 432a45a0-ae46-4a33-a465-0d3434e6093a_wgs_gdc_realn.bam 147035556436 BAM harmonized CPTAC3 e7077c1b-99cb-4498-9dfa-306b2f5415eb b2ac66692816068c3957d24ff573f6ed {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C207624.DUP_39bda097.WXS.R C207624 GBM WXS recurrent_tumor 7316UP-961 7316UP-961.WholeExome.RP-1303.bam 31458355354 BAM aligned CPTAC3 82200a05-7175-45ac-b33a-023baec9c206 8d4741c4c8279ecd037b63d68ada06ee {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C207624.DUP_39bda097.WXS.R.hg38 C207624 GBM WXS recurrent_tumor 7316UP-961 432a45a0-ae46-4a33-a465-0d3434e6093a_wxs_gdc_realn.bam 42379057118 BAM harmonized CPTAC3 e0c0f08d-5dac-4e2d-a50c-baa692a6d650 61dbc889ea21f421770ad9fd394c7573 {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C207624.DUP_8ab52100.MethArray.Green.T C207624 GBM Methylation_Array tumor 7316UP-603 205707890115_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c1ce334d-2013-4766-bd07-27c9185511b9 bbad0355210ece1fe5696263ebf42038 {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C207624.DUP_8ab52100.MethArray.Red.T C207624 GBM Methylation_Array tumor 7316UP-603 205707890115_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 608cb82b-4b05-44d7-b633-39965a9b2f9e 65669e8deaa5dd2247df0914fcf55467 {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C207624.DUP_8ab52100.WGS.T C207624 GBM WGS tumor 7316UP-603 7316UP-603.WholeGenome.RP-2158.bam 44572387735 BAM aligned CPTAC3 6672f7c2-cdfc-4b49-a4a2-7c6268af8e3f 10674ff683bc6dd56de7f7763652142b {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C207624.DUP_8ab52100.WGS.T.hg38 C207624 GBM WGS tumor 7316UP-603 fd0af1cc-2bd5-4433-b288-a8f95f0f4eb9_wgs_gdc_realn.bam 374013516593 BAM harmonized CPTAC3 4640f446-9179-43cd-b41c-5c5ef7251c59 d5e80e251cb012ced49804ef05a7a3ad {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C207624.DUP_8ab52100.WXS.T C207624 GBM WXS tumor 7316UP-603 7316UP-603.WholeExome.RP-1303.bam 23500383490 BAM aligned CPTAC3 21f27e5a-f142-436a-b61f-acd923395bde e8246c5d1764e772adce1746ac746b68 {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C207624.DUP_8ab52100.WXS.T.hg38 C207624 GBM WXS tumor 7316UP-603 fd0af1cc-2bd5-4433-b288-a8f95f0f4eb9_wxs_gdc_realn.bam 31950446410 BAM harmonized CPTAC3 370da836-9a04-4ad5-9b4f-11270f994e3c 7cb72144dfb577eb84955687b43f85df {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C207624.miRNA-Seq.R.hg38 C207624 GBM miRNA-Seq recurrent_tumor 7316UP-961-1104765 0c86d4ea-afa3-4129-8d63-928a637fc1ca_mirnaseq_gdc_realn.bam 337684567 BAM harmonized CPTAC3 38e154d0-8876-49b3-b54b-62f03e25303f e82e4d6b7e82a6c01de1f5b707312f3f {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor"} -C207624.miRNA-Seq.S1_L001_R1.R C207624 GBM miRNA-Seq recurrent_tumor 7316UP-961-1104765 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGAGC_S1_L001_R1_001.unaln.bam 304375832 BAM S1_L001_R1 unaligned CPTAC3 d0e95499-39a8-4dd2-826d-ae5806ddeb02 3709435a958c3b08e12f848edfc4c50f {"aliquot_tag": "ALQ_8e0b17e9", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C207624.miRNA-Seq.S8_L002_R1.T C207624 GBM miRNA-Seq tumor 7316UP-603-1104773 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L002_R1_001.unaln.bam 210809739 BAM S8_L002_R1 unaligned CPTAC3 b164fd3d-fae8-41e6-8616-7751408cef41 0194a737c2b426c6dc998aae583fe7a5 {"aliquot_tag": "ALQ_ce632f9a", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C207624.miRNA-Seq.T.hg38 C207624 GBM miRNA-Seq tumor 7316UP-603-1104773 218558d0-28d6-49d4-bb9a-64ac1fb77cb7_mirnaseq_gdc_realn.bam 248178964 BAM harmonized CPTAC3 12e8682c-6e14-40f3-9a72-51fde1c95fdb 07b8a41b78d2b7890b8d8d0d2b52ad57 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor"} -C207624.RNA-Seq.chimeric.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.chimeric.gdc_realn.bam 60234867 BAM chimeric harmonized CPTAC3 461747d9-96d8-40f6-afe7-d9be0c7ecf2e 9df1d8fb1f3c9b6edb8fea12e1c44d0e {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor"} -C207624.RNA-Seq.chimeric.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.chimeric.gdc_realn.bam 119564683 BAM chimeric harmonized CPTAC3 57a68cca-2a51-4d43-b548-82013fcdad76 add78b09b0ff0b3d7085d6da5edfb955 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor"} -C207624.RNA-Seq.genomic.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.genomic.gdc_realn.bam 8812826716 BAM genomic harmonized CPTAC3 9886fc0f-f118-47a7-a890-ae83f1754079 6f776a4b6c0b5a0e4e290a9c7c9cb8b0 {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor"} -C207624.RNA-Seq.genomic.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.genomic.gdc_realn.bam 8906386377 BAM genomic harmonized CPTAC3 ecf3e22c-87fa-4521-b475-9f51005d3c57 b27847e36933c3cb51be9763ae5b4452 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor"} -C207624.RNA-Seq.S24_L006_R1.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 4159870756 FASTQ S24_L006_R1 unaligned CPTAC3 851d1582-47e3-4694-a4ce-54b4f0ca7865 11fce1b39c68ad5a90fe8c12b6dbb44f {"aliquot_tag": "ALQ_ce632f9a", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C207624.RNA-Seq.S24_L006_R2.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 4566212973 FASTQ S24_L006_R2 unaligned CPTAC3 e3e4c767-7287-4451-9f1c-8b00cd2f8dd1 6b9ab39deed7cf5f8de14be482b5a544 {"aliquot_tag": "ALQ_ce632f9a", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C207624.RNA-Seq.S7_L002_R1.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R1_001.fastq.gz 3805401120 FASTQ S7_L002_R1 unaligned CPTAC3 3f6a1a61-d46d-4ec0-9635-1501d10f1e92 c440a9bc1ce5b24d6eef6b8108d63c77 {"aliquot_tag": "ALQ_8e0b17e9", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C207624.RNA-Seq.S7_L002_R2.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R2_001.fastq.gz 4104689026 FASTQ S7_L002_R2 unaligned CPTAC3 2b27d4e4-a94c-47e7-92d3-f317938b113c 1c0e87382af67ba51c6fb226195f4a86 {"aliquot_tag": "ALQ_8e0b17e9", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C207624.RNA-Seq.transcriptome.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.transcriptome.gdc_realn.bam 17709819823 BAM transcriptome harmonized CPTAC3 04953bce-c19e-4182-9e06-a54f0c3ff368 2141573c0f2880890d0b6e030a41bb50 {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor"} -C207624.RNA-Seq.transcriptome.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.transcriptome.gdc_realn.bam 15949289625 BAM transcriptome harmonized CPTAC3 4cf455f3-03b8-4c5e-8972-679bd4dbe32c 663502bdb532d157a1672fbf243999b9 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor"} -C207624.WGS.N C207624 GBM WGS blood_normal 7316UP-603-1105207 7316UP-603-1105207.WholeGenome.RP-2158.bam 48365906283 BAM aligned CPTAC3 5d553f09-86f8-4815-8cea-4173bcf82b4d 597298ebb33213e2bc64e8e294c03d3f {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal"} -C207624.WGS.N.hg38 C207624 GBM WGS blood_normal 7316UP-603-1105207 6b62ddb3-3254-4be1-a8b9-f4bdf604084f_wgs_gdc_realn.bam 147386095799 BAM harmonized CPTAC3 60ee616b-34ea-4cb4-a7b9-ee547438873e 69c52914a18e6b89770303afbb414cc5 {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal"} -C207624.WGS.R C207624 GBM WGS recurrent_tumor 7316UP-961-1105228 7316UP-961-1105228.WholeGenome.RP-2158.bam 51892018820 BAM aligned CPTAC3 86a56d79-40ac-47fe-8c62-7f854fa6fc68 22210c926a27db709a47b8da5c5df378 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor"} -C207624.WGS.R.hg38 C207624 GBM WGS recurrent_tumor 7316UP-961-1105228 5ca71d91-4680-43ff-bd33-c3d8fa14a225_wgs_gdc_realn.bam 154953390320 BAM harmonized CPTAC3 7c11efdf-e845-4f94-a953-cb56dcd035bc 9ce8d219856560048b098f739cf35ad3 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor"} -C207624.WXS.N C207624 GBM WXS blood_normal 7316UP-603-1105207 7316UP-603-1105207.WholeExome.RP-1303.bam 22981380825 BAM aligned CPTAC3 f5130800-4b65-43c8-a053-2b6e914c590b cb00ec231ffaa2f0905a240437480173 {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal"} -C207624.WXS.N.hg38 C207624 GBM WXS blood_normal 7316UP-603-1105207 6b62ddb3-3254-4be1-a8b9-f4bdf604084f_wxs_gdc_realn.bam 31201072361 BAM harmonized CPTAC3 79625f39-4daa-494d-8913-7ed53fc923a8 ad4fb03b09afb1d1e9156a25eb396faa {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal"} -C207624.WXS.R C207624 GBM WXS recurrent_tumor 7316UP-961-1105228 7316UP-961-1105228.WholeExome.RP-1303.bam 26058311240 BAM aligned CPTAC3 8845f830-2f50-42de-94fb-2f0a30ab221e 6f20b9db6058f7910af131aa19da6310 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor"} -C207624.WXS.R.hg38 C207624 GBM WXS recurrent_tumor 7316UP-961-1105228 5ca71d91-4680-43ff-bd33-c3d8fa14a225_wxs_gdc_realn.bam 35272049609 BAM harmonized CPTAC3 ef71d6a1-7f85-4bd4-8377-9d47ac79cd42 2473249ccd19449acc4e90e0a0f6ec23 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor"} -C207624.WXS.T C207624 GBM WXS tumor 7316UP-603-1105236 7316UP-603-1105236.WholeExome.RP-1303.bam 21605528792 BAM aligned CPTAC3 22146368-cc6c-4e49-9e71-1447474fd49a d160d7fc288281652e2fb8c080522473 {"aliquot_tag": "ALQ_6412bb9f", "gdc_sample_type": "Primary Tumor"} -C207624.WXS.T.hg38 C207624 GBM WXS tumor 7316UP-603-1105236 0af3abb3-d73f-47f4-9f8a-9ac41d230bca_wxs_gdc_realn.bam 29550234938 BAM harmonized CPTAC3 1252d351-fbb5-4716-b862-028f33399922 30c91c33118c9261f9509eb0c5165d3a {"aliquot_tag": "ALQ_6412bb9f", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_15b44502.WGS.T C208854 GBM WGS tumor 7316UP-613-1105231 7316UP-613-1105231.WholeGenome.RP-2158.bam 53280267937 BAM aligned CPTAC3 8567ce1f-6929-4a83-b435-515b66d20482 fecadcabd3805c78f4c8058849d33403 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_15b44502.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613-1105231 eb327532-25bd-4c10-a414-185474bdb7ef_wgs_gdc_realn.bam 154892466395 BAM harmonized CPTAC3 ce084882-0179-4eff-8700-3f917d1a9f5f ef075ada7471d8b75fdb42aff21894e9 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_15b44502.WXS.T C208854 GBM WXS tumor 7316UP-613-1105231 7316UP-613-1105231.WholeExome.RP-1303.bam 23980456638 BAM aligned CPTAC3 590d290b-2003-4d87-b61f-4b6ad5d5b241 375876a5012e7a1e191e88ffaeff4528 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_15b44502.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613-1105231 eb327532-25bd-4c10-a414-185474bdb7ef_wxs_gdc_realn.bam 33178156314 BAM harmonized CPTAC3 18f09f19-5cc3-413d-968f-a574a8a6084d f6abe07ddf1a37a12ec488389acfc2c3 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_2e7d19e4.MethArray.Green.R C208854 GBM Methylation_Array recurrent_tumor 7316UP-979 205705520023_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 27b06d69-8b8b-4c5b-b107-c5e32fd34da5 97be70c79ad40d2c8a267bd69268ef48 {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C208854.DUP_2e7d19e4.MethArray.Red.R C208854 GBM Methylation_Array recurrent_tumor 7316UP-979 205705520023_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 b6538f9f-5cef-4150-8cc0-b0b860a5b4f9 4d9e84f77a171c9d2958611aec756b05 {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C208854.DUP_2e7d19e4.WGS.R C208854 GBM WGS recurrent_tumor 7316UP-979 7316UP-979.WholeGenome.RP-2158.bam 55074581506 BAM aligned CPTAC3 78df3313-e73b-4af5-9f48-b6355a6a92d9 ad09713853c02104c8b8b13e20ce08e2 {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C208854.DUP_2e7d19e4.WGS.R.hg38 C208854 GBM WGS recurrent_tumor 7316UP-979 4a081753-34c5-425c-834b-a58bf7f6852a_wgs_gdc_realn.bam 164232072640 BAM harmonized CPTAC3 1a3d7f15-88b2-4db5-8ee9-5165f73e6c95 f59b28067d3116019a8d36026559aa1d {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C208854.DUP_2e7d19e4.WXS.R C208854 GBM WXS recurrent_tumor 7316UP-979 7316UP-979.WholeExome.RP-1303.bam 31361921312 BAM aligned CPTAC3 aa0cc5f9-9b08-4f3a-b55c-1db2b68f82db 0ad32e6dc8343e6dad27b661e87c1a1e {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C208854.DUP_2e7d19e4.WXS.R.hg38 C208854 GBM WXS recurrent_tumor 7316UP-979 4a081753-34c5-425c-834b-a58bf7f6852a_wxs_gdc_realn.bam 43685335710 BAM harmonized CPTAC3 ee614c68-b0f8-4e3b-ac11-408cb4bc95ad 38cc108f534accd6814235ca15b0813c {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C208854.DUP_93ae1041.MethArray.Green.T C208854 GBM Methylation_Array tumor 7316UP-613 205854140169_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 753dca8a-c538-4461-bbc9-6f428acf886e 47d2f3b2fcb8d627639ee5b02967915f {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_93ae1041.MethArray.Red.T C208854 GBM Methylation_Array tumor 7316UP-613 205854140169_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 42ef4394-bca9-4f06-b2c1-ee5917845ab2 1bc919e6626a14af3781cec9532dbad7 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_93ae1041.WGS.T C208854 GBM WGS tumor 7316UP-613 7316UP-613.WholeGenome.RP-2158.bam 51528547167 BAM aligned CPTAC3 27997ad0-1509-45b0-b324-54b37ae66cde f556e6fabac000b143bd95ec3517bcf9 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_93ae1041.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613 9c504d59-e2a4-492c-ae3a-993e3f802cef_wgs_gdc_realn.bam 150118668478 BAM harmonized CPTAC3 a3290f46-6977-427f-8c5b-0f3f02d4e85f ea26602504e929f820651ed2ef442f33 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_93ae1041.WXS.T C208854 GBM WXS tumor 7316UP-613 7316UP-613.WholeExome.RP-1303.bam 21743058805 BAM aligned CPTAC3 192f3f34-7cb3-489a-a136-46c1257a12d5 75b9bb757b9ef9b49c1cb54f80a4c066 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_93ae1041.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613 9c504d59-e2a4-492c-ae3a-993e3f802cef_wxs_gdc_realn.bam 29608380930 BAM harmonized CPTAC3 af9ba009-d30c-4629-98a5-80c96e605e94 6940fb901cfdb81d96801b9797288018 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_af68ac6d.miRNA-Seq.S4_L001_R1.T C208854 GBM miRNA-Seq tumor 7316UP-613-1104768 210817_UNC31-K00269_0302_AHLCTHBBXY_CAACTA_S4_L001_R1_001.unaln.bam 319124792 BAM S4_L001_R1 unaligned CPTAC3 96ae0e23-3609-4e92-8cce-73a084757155 000e987907995d7fd1b2e7a145e9feea {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_af68ac6d.miRNA-Seq.T.hg38 C208854 GBM miRNA-Seq tumor 7316UP-613-1104768 1ea38c56-1c4e-4b22-9384-c644f7f1107a_mirnaseq_gdc_realn.bam 370736800 BAM harmonized CPTAC3 b9141a66-07a2-43ba-911d-f233eadc77c6 f937d7d7814cd0d462091b1471adf7c8 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_af68ac6d.RNA-Seq.chimeric.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.chimeric.gdc_realn.bam 41387195 BAM chimeric harmonized CPTAC3 68cf86b4-f579-4b01-81f9-0c40f0b201d0 8b0bf8812debbf9d55af6c33dce4540e {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_af68ac6d.RNA-Seq.genomic.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.genomic.gdc_realn.bam 8963599820 BAM genomic harmonized CPTAC3 4dcbea11-1c0b-4af5-991c-61daa3d739d7 de62feb74f4c0d811f1f405ecf573b50 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_af68ac6d.RNA-Seq.S13_L004_R1.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R1_001.fastq.gz 3590219283 FASTQ S13_L004_R1 unaligned CPTAC3 182139b3-ba15-4e62-b4c8-572f6aa6937c d4b703f1ea765e87cf8d1b211b2aa324 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_af68ac6d.RNA-Seq.S13_L004_R2.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R2_001.fastq.gz 3900126651 FASTQ S13_L004_R2 unaligned CPTAC3 977243c2-78c9-4409-ba05-1a11d89b52d6 b546600dc9ba21a85e161dce03332352 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C208854.DUP_af68ac6d.RNA-Seq.transcriptome.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.transcriptome.gdc_realn.bam 12833670943 BAM transcriptome harmonized CPTAC3 1e6a2353-ac07-41b8-a3e3-5d021c4f3e0c be387d3286327c25dc8d29a43ad133e1 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C208854.WGS.N C208854 GBM WGS blood_normal 7316UP-613-1105214 7316UP-613-1105214.WholeGenome.RP-2158.bam 50706461361 BAM aligned CPTAC3 72887f40-c864-4a38-943f-6bc9a23839c4 81fe6743c9a38180722f248082183268 {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal"} -C208854.WGS.N.hg38 C208854 GBM WGS blood_normal 7316UP-613-1105214 440c4098-c44d-412d-b0d1-217347a7a683_wgs_gdc_realn.bam 148979882282 BAM harmonized CPTAC3 27863cbe-e9e0-42ff-9e34-06102194bfdb 2e0d5552fd421494c582142a63ef433a {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal"} -C208854.WGS.R C208854 GBM WGS recurrent_tumor 7316UP-979-1105201 7316UP-979-1105201.WholeGenome.RP-2158.bam 48370888424 BAM aligned CPTAC3 8bcc6a08-0ddb-4227-b24a-f7d23929dd3f 7324b544174e1cbf714dcf200ff57d05 {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor"} -C208854.WGS.R.hg38 C208854 GBM WGS recurrent_tumor 7316UP-979-1105201 ed410371-455e-4995-ad53-4f8193379aff_wgs_gdc_realn.bam 137547923224 BAM harmonized CPTAC3 cf4ad53c-33ca-4a7e-9603-1e00fd5a5bf8 63f7489229bddfdc49c91bdf42463599 {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor"} -C208854.WGS.T C208854 GBM WGS tumor 7316UP-613-1105226 7316UP-613-1105226.WholeGenome.RP-2158.bam 46609557127 BAM aligned CPTAC3 fbecca03-1af4-4d30-8a2c-57d07c87feb4 f71dcb57813b35f8dbbaf134191ea679 {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor"} -C208854.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613-1105226 39d0b9dc-ead3-409f-87fc-484fee59f592_wgs_gdc_realn.bam 135875851954 BAM harmonized CPTAC3 36aac09f-30e3-4464-a20e-33c90605fe83 044fa8f1136748bb5090c38121cec123 {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor"} -C208854.WXS.N C208854 GBM WXS blood_normal 7316UP-613-1105214 7316UP-613-1105214.WholeExome.RP-1303.bam 26660154490 BAM aligned CPTAC3 754d5b7a-f637-46e2-a5e7-e58d62a1b43e 975865c45dd70776e36e2ba7f66f7b6c {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal"} -C208854.WXS.N.hg38 C208854 GBM WXS blood_normal 7316UP-613-1105214 440c4098-c44d-412d-b0d1-217347a7a683_wxs_gdc_realn.bam 36329064168 BAM harmonized CPTAC3 58560d7d-dc88-405c-ac9c-7a5af669cbcc b7fda3172d1f7ce9a7d3c834d3c729f4 {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal"} -C208854.WXS.R C208854 GBM WXS recurrent_tumor 7316UP-979-1105201 7316UP-979-1105201.WholeExome.RP-1303.bam 26993568783 BAM aligned CPTAC3 96bb342a-acb5-4474-9c48-b3e0274aec8c 2ba8d86df49e8f60212310530ec8996f {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor"} -C208854.WXS.R.hg38 C208854 GBM WXS recurrent_tumor 7316UP-979-1105201 ed410371-455e-4995-ad53-4f8193379aff_wxs_gdc_realn.bam 36170830486 BAM harmonized CPTAC3 db570295-2e88-4c1b-8707-cb7a7845a333 ece46867e053f705c7a4090c01e7ee08 {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor"} -C208854.WXS.T C208854 GBM WXS tumor 7316UP-613-1105226 7316UP-613-1105226.WholeExome.RP-1303.bam 21215977915 BAM aligned CPTAC3 3b0a87eb-969e-45f3-bdda-a2cdf407801b c2060b256cbcfc2d14eb033e4f0d242a {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor"} -C208854.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613-1105226 39d0b9dc-ead3-409f-87fc-484fee59f592_wxs_gdc_realn.bam 28593895334 BAM harmonized CPTAC3 20773aad-0e5f-4b6d-8542-6981c9bf31a9 ec3d2b0754bcf3be4ad2391336fc1e6f {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor"} -C217710.DUP_e91fb26d.MethArray.Green.T C217710 GBM Methylation_Array tumor 7316UP-19 205828590001_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 548a5d6b-1bc0-4166-8778-d53f6df4d1c4 ec5e61e9d039ae0390ebec509f5a6ae4 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C217710.DUP_e91fb26d.MethArray.Red.T C217710 GBM Methylation_Array tumor 7316UP-19 205828590001_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 94bfa561-795f-4d14-89bb-010777414cc0 f74d110c0655caa899f0c2bcdd673487 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C217710.DUP_e91fb26d.WGS.T C217710 GBM WGS tumor 7316UP-19 7316UP-19.WholeGenome.RP-2158.bam 52811565719 BAM aligned CPTAC3 63c71c95-7bf7-46cc-b049-5163af8dc1c6 ce37eebc60678844629443a0bde61899 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C217710.DUP_e91fb26d.WGS.T.hg38 C217710 GBM WGS tumor 7316UP-19 cdfb6ee2-5d43-478c-8f60-80c3c5ef589e_wgs_gdc_realn.bam 156499832002 BAM harmonized CPTAC3 0c89d6fb-4969-4d9d-8d68-05a42e533868 909e9448f77fd07fcaaa733b011b1a6d {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C217710.DUP_e91fb26d.WXS.T C217710 GBM WXS tumor 7316UP-19 7316UP-19.WholeExome.RP-1303.bam 43873823632 BAM aligned CPTAC3 870d14bf-8aaf-494a-81fe-947dfa11787d 9d057509664a0689ef71657720d6ad12 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C217710.DUP_e91fb26d.WXS.T.hg38 C217710 GBM WXS tumor 7316UP-19 cdfb6ee2-5d43-478c-8f60-80c3c5ef589e_wxs_gdc_realn.bam 60153137014 BAM harmonized CPTAC3 8bbd9c83-206a-4547-93fb-1dbc329c4128 91df9202899a6864590d162d20c1a3c2 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C217710.MethArray.Green.R C217710 GBM Methylation_Array recurrent_tumor 7316UP-1534 205707890105_R01C01_Grn.idat 13677915 IDAT Green NA CPTAC3 074ff276-a07e-43a9-8713-65dd020df158 9728aa6ab902b42e8b53e47ee538e75e {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor"} -C217710.MethArray.Red.R C217710 GBM Methylation_Array recurrent_tumor 7316UP-1534 205707890105_R01C01_Red.idat 13677915 IDAT Red NA CPTAC3 9093e6cd-83e4-474a-9031-b055f7d793ca fd622fa63dc80f4c8bfc1df7cf85220b {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor"} -C217710.miRNA-Seq.S34_L002_R1.T C217710 GBM miRNA-Seq tumor 7316UP-19-1104782 210817_UNC31-K00269_0302_AHLCTHBBXY_TACAGC_S34_L002_R1_001.unaln.bam 345645442 BAM S34_L002_R1 unaligned CPTAC3 2790ed60-cbc8-45e5-9163-ef8019d37857 f1bd90e904143056332314d26e16da55 {"aliquot_tag": "ALQ_cd27e51d", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C217710.miRNA-Seq.T.hg38 C217710 GBM miRNA-Seq tumor 7316UP-19-1104782 6e87f138-74dd-46c7-915a-6ce609ca29a6_mirnaseq_gdc_realn.bam 396118233 BAM harmonized CPTAC3 746414a8-6c70-4dba-86a6-93bc3e699c0a ecf6caea7cac78566a2d41fba779d823 {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor"} -C217710.RNA-Seq.chimeric.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.chimeric.gdc_realn.bam 61467451 BAM chimeric harmonized CPTAC3 82aaf8d3-749f-4ba4-9ebd-988daf8fbd8e 9698a626e612f984acc5b8096c4b0a2c {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor"} -C217710.RNA-Seq.genomic.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.genomic.gdc_realn.bam 7636439461 BAM genomic harmonized CPTAC3 94288feb-dfc3-4639-98d5-effc4eb9920f dfac69da0fe353aa0992c1c813ef286b {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor"} -C217710.RNA-Seq.S16_L004_R1.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R1_001.fastq.gz 3640299302 FASTQ S16_L004_R1 unaligned CPTAC3 4b6817fd-a951-4eb0-bdac-687b93cf4b88 504b6c07619eca6f9337027810fa773f {"aliquot_tag": "ALQ_cd27e51d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C217710.RNA-Seq.S16_L004_R2.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R2_001.fastq.gz 3908136926 FASTQ S16_L004_R2 unaligned CPTAC3 4650c90e-4e22-48a5-942f-48a9cd2b854d 7b1e22caaeebf8d40e741a37c00f7fa1 {"aliquot_tag": "ALQ_cd27e51d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C217710.RNA-Seq.transcriptome.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.transcriptome.gdc_realn.bam 14787508544 BAM transcriptome harmonized CPTAC3 4f07515b-4fee-4733-a45a-a8a22e614394 e6b2c95083fbf84ff4be06db948ca955 {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor"} -C217710.WGS.N C217710 GBM WGS blood_normal 7316UP-1534-1105276 7316UP-1534-1105276.WholeGenome.RP-2158.bam 42699047182 BAM aligned CPTAC3 3b672292-d46c-47d9-8a16-820be2a1df27 0904f3af943819db329520fd69fbd768 {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal"} -C217710.WGS.N.hg38 C217710 GBM WGS blood_normal 7316UP-1534-1105276 8bd03e60-c7e2-4f21-8618-3bbfbab14e0f_wgs_gdc_realn.bam 121781435218 BAM harmonized CPTAC3 8e4974c6-65c8-4808-ac4a-530f6da8f875 01ae5df8c4fdbaf429dd513672318bb8 {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal"} -C217710.WGS.R C217710 GBM WGS recurrent_tumor 7316UP-1534 7316UP-1534.WholeGenome.RP-2158.bam 52402219420 BAM aligned CPTAC3 646c8302-ec6c-4ae5-a4d6-f52e2ca0d427 7fcdbcb20ae688519a12ecc36571ebef {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor"} -C217710.WGS.R.hg38 C217710 GBM WGS recurrent_tumor 7316UP-1534 6fb6d874-58c7-4ece-afce-575d4231a62e_wgs_gdc_realn.bam 157037230451 BAM harmonized CPTAC3 0b49269a-f716-4dda-8dd4-8c7fc370e9d1 353f71c7b68e2fb6fdfef394fa07b920 {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor"} -C217710.WXS.N C217710 GBM WXS blood_normal 7316UP-1534-1105276 7316UP-1534-1105276.WholeExome.RP-1303.bam 28868330979 BAM aligned CPTAC3 4dd64fa5-6f9b-4fd5-90d7-d035a8671553 5675c85b2f625af9769b02a848ac62af {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal"} -C217710.WXS.N.hg38 C217710 GBM WXS blood_normal 7316UP-1534-1105276 8bd03e60-c7e2-4f21-8618-3bbfbab14e0f_wxs_gdc_realn.bam 39176044019 BAM harmonized CPTAC3 21d37f10-b599-4797-b425-f15427444632 eafb54a7a9f7d21b0dbca89d1cbc4066 {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal"} -C217710.WXS.R C217710 GBM WXS recurrent_tumor 7316UP-1534 7316UP-1534.WholeExome.RP-1303.bam 25203950308 BAM aligned CPTAC3 566329d7-f198-4924-bf01-6cdd00d692a8 08e4d0b6e868277ba65d5c289c1f1fa6 {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor"} -C217710.WXS.R.hg38 C217710 GBM WXS recurrent_tumor 7316UP-1534 6fb6d874-58c7-4ece-afce-575d4231a62e_wxs_gdc_realn.bam 34120833987 BAM harmonized CPTAC3 419f929c-e711-431e-bb23-a3a84f54c9bf e52bbe777d993096e10d151447aff4d3 {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor"} -C217710.WXS.T C217710 GBM WXS tumor 7316UP-19-1105245 7316UP-19-1105245.WholeExome.RP-1303.bam 22589791817 BAM aligned CPTAC3 87b51d25-9339-49ab-920f-ab8cecd367e5 ab4ce8b229b7648690e1887995435e07 {"aliquot_tag": "ALQ_41819a3c", "gdc_sample_type": "Primary Tumor"} -C217710.WXS.T.hg38 C217710 GBM WXS tumor 7316UP-19-1105245 49aea928-c7da-432e-aa39-ec92de5d9f00_wxs_gdc_realn.bam 30329595462 BAM harmonized CPTAC3 1d5ad431-811e-436c-8f11-dc1badb61be6 270bd4c6171cc57b31517e57572b1b3b {"aliquot_tag": "ALQ_41819a3c", "gdc_sample_type": "Primary Tumor"} -C219555.DUP_3937258b.MethArray.Green.R C219555 GBM Methylation_Array recurrent_tumor 7316UP-334 205707890073_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8bc6c249-f73a-4625-8894-11c9596a944b 7dadbfb438a60b2b40584a2082214f59 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C219555.DUP_3937258b.MethArray.Red.R C219555 GBM Methylation_Array recurrent_tumor 7316UP-334 205707890073_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 dd59ad96-eb19-422d-8076-b92099136c03 ad6ee965047fccdd0ce3950d68b50274 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C219555.DUP_3937258b.WGS.R C219555 GBM WGS recurrent_tumor 7316UP-334 7316UP-334.WholeGenome.RP-2158.bam 58828061146 BAM aligned CPTAC3 882cde8a-9ed0-4fcf-84c5-4e5717afd1a7 0a98c904b0bf15dfbc619670b4a420c4 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C219555.DUP_3937258b.WGS.R.hg38 C219555 GBM WGS recurrent_tumor 7316UP-334 dabfaa11-3cce-47d8-a945-c85d5c40a6a7_wgs_gdc_realn.bam 177402486286 BAM harmonized CPTAC3 8ae9de4a-75fa-4dfb-8c50-ff32c7cd8aa1 0d2596fd4a943e5e51af47a0d93fb81f {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C219555.DUP_3937258b.WXS.R C219555 GBM WXS recurrent_tumor 7316UP-334 7316UP-334.WholeExome.RP-1303.bam 30187741761 BAM aligned CPTAC3 8672a141-dd74-4e0e-ab12-6ae1ea12d83a cbc3eb75d2d9d87e9bf45730d1dc655b {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C219555.DUP_3937258b.WXS.R.hg38 C219555 GBM WXS recurrent_tumor 7316UP-334 dabfaa11-3cce-47d8-a945-c85d5c40a6a7_wxs_gdc_realn.bam 40425836799 BAM harmonized CPTAC3 f33c138f-4700-492b-a2ed-83c90af51614 65607677f1d267a17da977684ef77cc4 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C219555.DUP_d29f9cc4.MethArray.Green.T C219555 GBM Methylation_Array tumor 7316UP-35 205854140144_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 0098bf4f-cf5e-40ea-a6e2-6fa1a85ab19b 5d3b53e33ad753c495fdd175ee0d3e94 {"aliquot_tag": "DUP_d29f9cc4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C219555.DUP_d29f9cc4.MethArray.Red.T C219555 GBM Methylation_Array tumor 7316UP-35 205854140144_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a8b205bd-6ad7-40b0-8fb0-66bbe3041542 96cf5276b64dde5168bbf68a660b4141 {"aliquot_tag": "DUP_d29f9cc4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C219555.miRNA-Seq.R.hg38 C219555 GBM miRNA-Seq recurrent_tumor 7316UP-334-1104785 005136d4-8e1f-46b0-ba15-fb85ac76ce9a_mirnaseq_gdc_realn.bam 270599952 BAM harmonized CPTAC3 54f0a5f9-245f-43ed-9b41-c95021fe3e4b f9c8cfde1fa303d3004fe9a27390c509 {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor"} -C219555.miRNA-Seq.S12_L002_R1.R C219555 GBM miRNA-Seq recurrent_tumor 7316UP-334-1104785 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L002_R1_001.unaln.bam 231707571 BAM S12_L002_R1 unaligned CPTAC3 edce9c26-b973-45a8-bf27-2ff3e76b3bd8 b2a68eae9357e9dfdb8c738d300137fe {"aliquot_tag": "ALQ_5e99ece8", "sample": "S12", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C219555.RNA-Seq.chimeric.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.chimeric.gdc_realn.bam 163579955 BAM chimeric harmonized CPTAC3 3fc385bf-967b-4874-9a94-c564719270b7 cf3e156c005262f1c5984f50120e0b48 {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor"} -C219555.RNA-Seq.genomic.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.genomic.gdc_realn.bam 10356729173 BAM genomic harmonized CPTAC3 247c5814-1fd5-4768-b249-75e4f069dbfd 0ca0134bae7a3031a97043505ed2bab9 {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor"} -C219555.RNA-Seq.S23_L006_R1.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R1_001.fastq.gz 4651016359 FASTQ S23_L006_R1 unaligned CPTAC3 ddde0a66-c5c5-4aa0-8021-f4c5039e1adf c51ff4e283343f5e95d6e196be14f6e2 {"aliquot_tag": "ALQ_5e99ece8", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C219555.RNA-Seq.S23_L006_R2.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R2_001.fastq.gz 5060489472 FASTQ S23_L006_R2 unaligned CPTAC3 1871abee-0aa8-4766-b001-d9c3b0c8ff27 ce12fe866e58d02be49343030d28825e {"aliquot_tag": "ALQ_5e99ece8", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C219555.RNA-Seq.transcriptome.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.transcriptome.gdc_realn.bam 17756769933 BAM transcriptome harmonized CPTAC3 d9bc6712-c73c-49c9-9fd2-bb7a9ce5c333 51a4d96f7e7e86169fe619887514cdfe {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor"} -C219555.WGS.N C219555 GBM WGS blood_normal 7316UP-334-1105285 7316UP-334-1105285.WholeGenome.RP-2158.bam 68621543980 BAM aligned CPTAC3 8ab71475-b793-47d1-b19b-ed65b1ddd041 3c5c94a59bd9e5fd10c4de71fde732af {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal"} -C219555.WGS.N.hg38 C219555 GBM WGS blood_normal 7316UP-334-1105285 244e6c1e-b17a-4bec-ac27-4a2765b149f7_wgs_gdc_realn.bam 206388670880 BAM harmonized CPTAC3 d2a01326-0fde-420b-8a11-23df57892a50 ed25c32d9211835f48ea1ec01ee01fbb {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal"} -C219555.WGS.R C219555 GBM WGS recurrent_tumor 7316UP-334-1105248 7316UP-334-1105248.WholeGenome.RP-2158.bam 71429152493 BAM aligned CPTAC3 8f0e725e-7d31-48ac-8a04-c1526e8edeac 2e28d375752ba773f7d62ac1539ac13e {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor"} -C219555.WGS.R.hg38 C219555 GBM WGS recurrent_tumor 7316UP-334-1105248 2fd672f1-2ae2-4ad7-832c-343cf9c0dc72_wgs_gdc_realn.bam 213545190846 BAM harmonized CPTAC3 873d00c3-e72a-4710-8cf7-728864c2eb28 0bd5563fb3823547caf37dda43ccc1a8 {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor"} -C219555.WGS.T C219555 GBM WGS tumor 7316UP-35-1105259 7316UP-35-1105259.WholeGenome.RP-2158.bam 51612850770 BAM aligned CPTAC3 919b5f49-39de-41bb-abd9-6c04952e500d 67b88addfe5a45e13daa454928d625bc {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor"} -C219555.WGS.T.hg38 C219555 GBM WGS tumor 7316UP-35-1105259 b8cc75d6-b8c2-4e04-8808-9c99797b2115_wgs_gdc_realn.bam 154831970957 BAM harmonized CPTAC3 6715f699-6a80-427d-b2c8-07a09f0682ca 1d4a6fefb3649c8e0e840fef1b6de1a6 {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor"} -C219555.WXS.N C219555 GBM WXS blood_normal 7316UP-334-1105285 7316UP-334-1105285.WholeExome.RP-1303.bam 32358444473 BAM aligned CPTAC3 a05ce773-9b47-43c5-a3b7-95f94c23e6a3 8cab5397421be7e2824cf4eb16f92b5c {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal"} -C219555.WXS.N.hg38 C219555 GBM WXS blood_normal 7316UP-334-1105285 244e6c1e-b17a-4bec-ac27-4a2765b149f7_wxs_gdc_realn.bam 43938591482 BAM harmonized CPTAC3 6c88f523-a5c3-411d-9915-73415a0c6c10 d69eb0b38e756f5104da619d4d9df56d {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal"} -C219555.WXS.R C219555 GBM WXS recurrent_tumor 7316UP-334-1105248 7316UP-334-1105248.WholeExome.RP-1303.bam 25559525369 BAM aligned CPTAC3 7fbb52ea-e534-4842-a4e4-b732b66a7606 3bf6f503087985b2f93ea61f74a52a6b {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor"} -C219555.WXS.R.hg38 C219555 GBM WXS recurrent_tumor 7316UP-334-1105248 2fd672f1-2ae2-4ad7-832c-343cf9c0dc72_wxs_gdc_realn.bam 35015525938 BAM harmonized CPTAC3 e12410da-6165-46b0-bde6-6da7de7906f7 6fdf76109958da2814c41bf8f8195cd9 {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor"} -C219555.WXS.T C219555 GBM WXS tumor 7316UP-35-1105259 7316UP-35-1105259.WholeExome.RP-1303.bam 23960204308 BAM aligned CPTAC3 869a1730-a19a-4fc9-98e7-077f14452b5b 99852b1ff85731f9126c5411f8a8aed5 {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor"} -C219555.WXS.T.hg38 C219555 GBM WXS tumor 7316UP-35-1105259 b8cc75d6-b8c2-4e04-8808-9c99797b2115_wxs_gdc_realn.bam 33230013329 BAM harmonized CPTAC3 1d6f28a8-c2fe-4259-b1ed-b59d4b65d934 d43238f7cbb4c60e1360c31503ea396c {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor"} -C223491.DUP_41e87f66.MethArray.Green.R C223491 GBM Methylation_Array recurrent_tumor 7316UP-483 205705520154_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9d9ff60a-1502-4e8c-a193-7bddf0ab3bbd aa971c7175a9c1163d0b4de7585e31c7 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C223491.DUP_41e87f66.MethArray.Red.R C223491 GBM Methylation_Array recurrent_tumor 7316UP-483 205705520154_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 323b52cf-9e89-460c-9375-cb6f575b87f9 6eb0da419d54fecc35102fedd5ff85c6 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C223491.DUP_41e87f66.WGS.R C223491 GBM WGS recurrent_tumor 7316UP-483 7316UP-483.WholeGenome.RP-2158.bam 48571709354 BAM aligned CPTAC3 b737472a-27fd-4458-81e1-b6951939289b 76c548d4af0f2e32f325ada5f4d79d88 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C223491.DUP_41e87f66.WGS.R.hg38 C223491 GBM WGS recurrent_tumor 7316UP-483 522b9088-599b-4b9f-8508-bf4e7c39e09d_wgs_gdc_realn.bam 146855438705 BAM harmonized CPTAC3 53f52c5e-9e16-4b4f-80bb-d5cf3488bb7f 09b2565ff51feabc40a05315729ce04c {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C223491.DUP_41e87f66.WXS.R C223491 GBM WXS recurrent_tumor 7316UP-483 7316UP-483.WholeExome.RP-1303.bam 30751621621 BAM aligned CPTAC3 8fb10564-d2e3-409b-9a06-042169259b88 9c43dda87e49a102bab58208a5a39247 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C223491.DUP_41e87f66.WXS.R.hg38 C223491 GBM WXS recurrent_tumor 7316UP-483 522b9088-599b-4b9f-8508-bf4e7c39e09d_wxs_gdc_realn.bam 41630615778 BAM harmonized CPTAC3 beb5a8d2-4ca2-4beb-90d3-68bff12b16ce d2631a4c8a5f2add80eac93d4e54085e {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C223491.miRNA-Seq.R.hg38 C223491 GBM miRNA-Seq recurrent_tumor 7316UP-483-1104812 aa2e8ef0-daae-48d4-9c37-59a4963dbff7_mirnaseq_gdc_realn.bam 403474199 BAM harmonized CPTAC3 72fc4bc7-6e69-4845-b074-95c067fa8275 52b9db6072480bcfeb009a1030999025 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor"} -C223491.miRNA-Seq.S43_L003_R1.R C223491 GBM miRNA-Seq recurrent_tumor 7316UP-483-1104812 210817_UNC31-K00269_0302_AHLCTHBBXY_ACTGAT_S43_L003_R1_001.unaln.bam 361925118 BAM S43_L003_R1 unaligned CPTAC3 eaef7f8f-75b6-4467-b88e-0e5422639d63 081c88f5d0f73a5611bfa0d07d85c323 {"aliquot_tag": "ALQ_afd90682", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C223491.RNA-Seq.chimeric.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.chimeric.gdc_realn.bam 36655213 BAM chimeric harmonized CPTAC3 499e0d3c-b835-473b-83d0-17875ce1fc6f 8d8971605bd70b7787854631d4287455 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor"} -C223491.RNA-Seq.genomic.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.genomic.gdc_realn.bam 11405701389 BAM genomic harmonized CPTAC3 9df33640-601a-45cc-8889-20e6a483224f 269513a67aadc54bd11d677cd104a4e7 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor"} -C223491.RNA-Seq.S19_L005_R1.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R1_001.fastq.gz 4037245471 FASTQ S19_L005_R1 unaligned CPTAC3 1c436956-9492-4126-8ed6-160d0909e49e 9ffa94c73af728fd8eb0ebd074099352 {"aliquot_tag": "ALQ_afd90682", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C223491.RNA-Seq.S19_L005_R2.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R2_001.fastq.gz 4283501940 FASTQ S19_L005_R2 unaligned CPTAC3 a46bf346-0896-46e7-a3c2-ca63e1e137a0 bfa5879e591fba0a64a7405513531247 {"aliquot_tag": "ALQ_afd90682", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C223491.RNA-Seq.transcriptome.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.transcriptome.gdc_realn.bam 17383707923 BAM transcriptome harmonized CPTAC3 535d00cf-915f-415e-a3a6-589456b31e1c bd761465cec00429ac5150c16189c2e4 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor"} -C223491.WGS.R C223491 GBM WGS recurrent_tumor 7316UP-483-1105191 7316UP-483-1105191.WholeGenome.RP-2158.bam 52692734505 BAM aligned CPTAC3 7fc1bd1b-2147-44ed-91d9-cf53b966f700 8841250ca3857d6c82ddd15f240e9209 {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor"} -C223491.WGS.R.hg38 C223491 GBM WGS recurrent_tumor 7316UP-483-1105191 d235c25d-bb95-4dc9-a1b3-128f850fd737_wgs_gdc_realn.bam 158218502480 BAM harmonized CPTAC3 3618f1c0-bc30-4f7e-ae8c-b3e91d478cec d27dcd351a7166a98b261ca3a12319a0 {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor"} -C223491.WGS.T C223491 GBM WGS tumor 7316UP-99 7316UP-99.WholeGenome.RP-2158.bam 49865930928 BAM aligned CPTAC3 cf5efe80-b78b-452d-8f15-b60678ac0fa8 f6ed1c9218fbcd62dae4e622cf245062 {"aliquot_tag": "ALQ_21c63865", "gdc_sample_type": "Primary Tumor"} -C223491.WGS.T.hg38 C223491 GBM WGS tumor 7316UP-99 7980012c-6c74-4d70-8946-86a3479417c0_wgs_gdc_realn.bam 432727220691 BAM harmonized CPTAC3 412e0e3f-8c87-4641-9204-126bc09e68ac f93c506e1db1d708fe3ffcdc4e57cb22 {"aliquot_tag": "ALQ_21c63865", "gdc_sample_type": "Primary Tumor"} -C223491.WXS.N C223491 GBM WXS blood_normal 7316UP-483-1105289 7316UP-483-1105289.WholeExome.RP-1303.bam 20512771626 BAM aligned CPTAC3 367f70e0-fa2a-4680-bc61-984611e74928 7932b754fb2c0bd80ccc9a514dd6f8ab {"aliquot_tag": "ALQ_5ce286f0", "gdc_sample_type": "Blood Derived Normal"} -C223491.WXS.N.hg38 C223491 GBM WXS blood_normal 7316UP-483-1105289 49dcce64-3419-4987-952e-55d7cbd236e4_wxs_gdc_realn.bam 28176936824 BAM harmonized CPTAC3 6930c8e7-67ee-4f60-9feb-a4ea5410ffb7 387507faa86e14be753f0b81241db44d {"aliquot_tag": "ALQ_5ce286f0", "gdc_sample_type": "Blood Derived Normal"} -C223491.WXS.R C223491 GBM WXS recurrent_tumor 7316UP-483-1105191 7316UP-483-1105191.WholeExome.RP-1303.bam 15164145344 BAM aligned CPTAC3 fd8663d4-c762-4db2-b8a0-031382dc3666 20dee35180874ce7ded6069ea7c7aeba {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor"} -C223491.WXS.R.hg38 C223491 GBM WXS recurrent_tumor 7316UP-483-1105191 d235c25d-bb95-4dc9-a1b3-128f850fd737_wxs_gdc_realn.bam 20687623019 BAM harmonized CPTAC3 48495898-8b43-46dc-8dd4-da3253772b14 1ca886c2e3e1df682089cae43f0a453c {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor"} -C224106.DUP_4208c7cd.WGS.T C224106 GBM WGS tumor 7316UP-287 7316UP-287.WholeGenome.RP-2158.bam 57941003136 BAM aligned CPTAC3 14a6ce1c-24ce-4888-bbac-7115538ed5fa 99d73dc54dd42710a392b852d8f89a9b {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224106.DUP_4208c7cd.WGS.T.hg38 C224106 GBM WGS tumor 7316UP-287 03758b31-f5e1-4bea-8001-a5147945dafa_wgs_gdc_realn.bam 169657009041 BAM harmonized CPTAC3 0c382407-5002-43eb-832a-57e8a14d039e 46d02d8f3e011c06c608fa192a5c7789 {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224106.DUP_4208c7cd.WXS.T C224106 GBM WXS tumor 7316UP-287 7316UP-287.WholeExome.RP-1303.bam 26187586378 BAM aligned CPTAC3 4e2edbeb-e029-4333-9431-a9d342ee7bff 533b74a6248fe294c445c8a905a140cf {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224106.DUP_4208c7cd.WXS.T.hg38 C224106 GBM WXS tumor 7316UP-287 03758b31-f5e1-4bea-8001-a5147945dafa_wxs_gdc_realn.bam 35883300355 BAM harmonized CPTAC3 68b960fe-389d-45f1-a5b1-4500a8670c48 8779d986550dac51903c0c6d53991808 {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224106.DUP_b88a1276.MethArray.Green.R C224106 GBM Methylation_Array recurrent_tumor 7316UP-895 205555380005_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ee637352-7622-4e78-8f49-4cb6f331c81d 80dec5d35eebcaa1deb4e5bb7606bd47 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224106.DUP_b88a1276.MethArray.Red.R C224106 GBM Methylation_Array recurrent_tumor 7316UP-895 205555380005_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 d9924715-fa6d-4c08-b850-4512b5933c34 b995417ecc9afd4ecd1c21cdb1c9b668 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224106.DUP_b88a1276.WGS.R C224106 GBM WGS recurrent_tumor 7316UP-895 7316UP-895.WholeGenome.RP-2158.bam 56580658686 BAM aligned CPTAC3 bff5850e-413d-4144-9d2a-d86b489b09d5 b195758db70019dabe68ab3f3df6934a {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224106.DUP_b88a1276.WGS.R.hg38 C224106 GBM WGS recurrent_tumor 7316UP-895 cad5e2fe-1eac-4c95-9778-6936f202f45f_wgs_gdc_realn.bam 166463595508 BAM harmonized CPTAC3 2eea8e90-93af-4c4b-b5c5-dc7d0df38c79 0ec20d1521963c813506924172ab5972 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224106.DUP_b88a1276.WXS.R C224106 GBM WXS recurrent_tumor 7316UP-895 7316UP-895.WholeExome.RP-1303.bam 31935073467 BAM aligned CPTAC3 fad3c698-2343-44c6-964a-bc3ef345becc 10954a95e1303d746ae1dd550acf104b {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224106.DUP_b88a1276.WXS.R.hg38 C224106 GBM WXS recurrent_tumor 7316UP-895 cad5e2fe-1eac-4c95-9778-6936f202f45f_wxs_gdc_realn.bam 43570399546 BAM harmonized CPTAC3 fac107b0-84b9-43d3-9b61-b427d765c21e 2f1d414544357541c339f38282346855 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224106.miRNA-Seq.R.hg38 C224106 GBM miRNA-Seq recurrent_tumor 7316UP-895-1104770 10425193-5847-4cf7-a5ca-17100f107991_mirnaseq_gdc_realn.bam 480265592 BAM harmonized CPTAC3 460a3629-f722-4776-85dc-1869bf024432 28fb3354a3fa3b29081f8b52c82a1424 {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor"} -C224106.miRNA-Seq.S1_L003_R1.T C224106 GBM miRNA-Seq tumor 7316UP-287-1104813 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGAGC_S1_L003_R1_001.unaln.bam 256591520 BAM S1_L003_R1 unaligned CPTAC3 943ff38d-a88f-4765-9d04-c8c525f3bfdd d6fd5d6e4dcf39d72fb4b256220a770f {"aliquot_tag": "ALQ_6d87ad5b", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C224106.miRNA-Seq.S6_L001_R1.R C224106 GBM miRNA-Seq recurrent_tumor 7316UP-895-1104770 210817_UNC31-K00269_0302_AHLCTHBBXY_CACGAT_S6_L001_R1_001.unaln.bam 427802412 BAM S6_L001_R1 unaligned CPTAC3 295ba69a-2716-4ae2-b09e-198a6b014b76 5ecf4f1b00db068f403e38a85d3eb67a {"aliquot_tag": "ALQ_8a130766", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C224106.miRNA-Seq.T.hg38 C224106 GBM miRNA-Seq tumor 7316UP-287-1104813 95379e20-dd9e-495e-be1c-ea43f37a3966_mirnaseq_gdc_realn.bam 285805780 BAM harmonized CPTAC3 f36ab729-410a-49cc-97b9-cf6b3b4bc706 08494ef2977d8fa82bde8cbd8ccbdb2c {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor"} -C224106.RNA-Seq.chimeric.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.chimeric.gdc_realn.bam 82318793 BAM chimeric harmonized CPTAC3 8645fca5-9ceb-4d95-9f1f-1a5ade5e8725 8117bd6d73b80010fb48210bfc98e3fb {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor"} -C224106.RNA-Seq.chimeric.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.chimeric.gdc_realn.bam 107879322 BAM chimeric harmonized CPTAC3 5cb73372-7217-4891-87c0-ad66e130ffc0 6a90be9bd1bdd8da16eb604beddaa434 {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor"} -C224106.RNA-Seq.genomic.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.genomic.gdc_realn.bam 11315891908 BAM genomic harmonized CPTAC3 2ae0fcc0-fe9d-4c71-a3e8-b8062afe1710 c0cb175bbd9b33c9677e3b5c69b293c4 {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor"} -C224106.RNA-Seq.genomic.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.genomic.gdc_realn.bam 9924215225 BAM genomic harmonized CPTAC3 d99f2d51-7f71-4145-bf9a-bd028efe6e6b 974b875a1479a3ed3fa56a3b60d6c24a {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor"} -C224106.RNA-Seq.S1_L001_R1.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R1_001.fastq.gz 4455928117 FASTQ S1_L001_R1 unaligned CPTAC3 c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e 513da73b88e9f6b073b04630e292ccfc {"aliquot_tag": "ALQ_8a130766", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C224106.RNA-Seq.S1_L001_R2.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R2_001.fastq.gz 5140415733 FASTQ S1_L001_R2 unaligned CPTAC3 6dddfa45-9731-416b-b47f-be884511bc5b 595bdff955d047f1f467300fc23eb2ea {"aliquot_tag": "ALQ_8a130766", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C224106.RNA-Seq.S20_L005_R1.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R1_001.fastq.gz 4345500965 FASTQ S20_L005_R1 unaligned CPTAC3 286d824a-e222-4b66-a50f-83ba2dfb89f4 3f69ffb8ffe4ff268f2bdff3e571eef2 {"aliquot_tag": "ALQ_6d87ad5b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C224106.RNA-Seq.S20_L005_R2.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R2_001.fastq.gz 4825520697 FASTQ S20_L005_R2 unaligned CPTAC3 1f9ffd59-cfe7-4040-9d6a-68c01075fe7a ab1d7f7d4fdac2ccb0a2153afc3699d1 {"aliquot_tag": "ALQ_6d87ad5b", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C224106.RNA-Seq.transcriptome.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.transcriptome.gdc_realn.bam 14515844936 BAM transcriptome harmonized CPTAC3 506bbf6b-7e4f-48a7-b0be-6d6014dd591a c322cf33e0acac48ec8b13b529d511f6 {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor"} -C224106.RNA-Seq.transcriptome.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.transcriptome.gdc_realn.bam 19283757877 BAM transcriptome harmonized CPTAC3 48880a9f-0675-4e53-86d4-ae4c66b78062 c07dc7bbed242b2c10734d5e225fd511 {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor"} -C224106.WGS.N C224106 GBM WGS blood_normal 7316UP-287-1105215 7316UP-287-1105215.WholeGenome.RP-2158.bam 60059311186 BAM aligned CPTAC3 e16365a8-367a-4945-a052-9125915293c1 4dee19ced6e06c643291f05488cf14f8 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal"} -C224106.WGS.N.hg38 C224106 GBM WGS blood_normal 7316UP-287-1105215 e7e95603-5344-4c1c-9521-c6170cd21afc_wgs_gdc_realn.bam 177393500318 BAM harmonized CPTAC3 27b129be-59e4-45b6-a760-37f62e4febe4 c557a9f2c0ff0e3e212174075315ca94 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal"} -C224106.WGS.R C224106 GBM WGS recurrent_tumor 7316UP-895-1105233 7316UP-895-1105233.WholeGenome.RP-2158.bam 65179748190 BAM aligned CPTAC3 ca7f9da0-0679-4be0-933f-f117d49d5089 b6ef7970c6c47d5b27832b599cce0fc3 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor"} -C224106.WGS.R.hg38 C224106 GBM WGS recurrent_tumor 7316UP-895-1105233 3a5851ea-4c01-4e59-9b77-648f9049b8f5_wgs_gdc_realn.bam 190836116792 BAM harmonized CPTAC3 48289e74-5ce6-4ae3-879b-2e43605f75a8 b4776e0e7a1926310180c3859d1defc8 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor"} -C224106.WGS.T C224106 GBM WGS tumor 7316UP-287-1105192 7316UP-287-1105192.WholeGenome.RP-2158.bam 49517781076 BAM aligned CPTAC3 fa03d5a2-d2cc-4688-bf42-61bec824f21c 050897226624b750777a305bdb623838 {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor"} -C224106.WGS.T.hg38 C224106 GBM WGS tumor 7316UP-287-1105192 a5fb9d82-568c-4f92-9d20-ff80d6bce284_wgs_gdc_realn.bam 142815256943 BAM harmonized CPTAC3 4b8621c8-b515-46b2-be8b-6ae003ea0291 57928ee84391098ae6aff62ab601e720 {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor"} -C224106.WXS.N C224106 GBM WXS blood_normal 7316UP-287-1105215 7316UP-287-1105215.WholeExome.RP-1303.bam 28440047682 BAM aligned CPTAC3 33ee6834-8406-45cc-ac7c-2f50544151bc aed1e3168ad3e0b30c4ec492cac763d0 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal"} -C224106.WXS.N.hg38 C224106 GBM WXS blood_normal 7316UP-287-1105215 e7e95603-5344-4c1c-9521-c6170cd21afc_wxs_gdc_realn.bam 38658005464 BAM harmonized CPTAC3 027df754-bfba-4dd3-a19e-66052fdfd928 daa060fafa614ee597a7886c022014b9 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal"} -C224106.WXS.R C224106 GBM WXS recurrent_tumor 7316UP-895-1105233 7316UP-895-1105233.WholeExome.RP-1303.bam 20933872946 BAM aligned CPTAC3 597f884b-d907-4300-8505-658bee55f16f c60da75d2d6c71982090f7b645d81df0 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor"} -C224106.WXS.R.hg38 C224106 GBM WXS recurrent_tumor 7316UP-895-1105233 3a5851ea-4c01-4e59-9b77-648f9049b8f5_wxs_gdc_realn.bam 28402074341 BAM harmonized CPTAC3 867233a4-8efd-4dbe-8ec6-bdd9c988c603 09855f3fbfdd7f14f90189c28a957821 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor"} -C224106.WXS.T C224106 GBM WXS tumor 7316UP-287-1105192 7316UP-287-1105192.WholeExome.RP-1303.bam 19953957842 BAM aligned CPTAC3 3bf37e1a-b64b-422e-9a8e-615a7be715d1 bd66881d33a80743296fbe8bfaee4c8e {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor"} -C224106.WXS.T.hg38 C224106 GBM WXS tumor 7316UP-287-1105192 a5fb9d82-568c-4f92-9d20-ff80d6bce284_wxs_gdc_realn.bam 27371401350 BAM harmonized CPTAC3 3345bb07-d0be-4306-be6e-ea632f8c5fc8 df80116e4bc22f698838a88d49993f27 {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor"} -C224967.DUP_97671269.MethArray.Green.R C224967 GBM Methylation_Array recurrent_tumor 7316UP-1273 205828590069_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 4002cea1-cf8f-4e48-a219-cf7e1964c589 cd9f6a2ddcba09c12a31ea8f77faa598 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224967.DUP_97671269.MethArray.Red.R C224967 GBM Methylation_Array recurrent_tumor 7316UP-1273 205828590069_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 6d0d0709-3af1-4c8b-9500-49585579b21e 45dac0ea9d2079cd44bdcede08d04511 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224967.DUP_97671269.WXS.R C224967 GBM WXS recurrent_tumor 7316UP-1273 7316UP-1273.WholeExome.RP-1303.bam 27413593642 BAM aligned CPTAC3 f5a8ace0-8716-4e5d-af37-d12769d3edc6 e2741b38c4d431dfbaeb72013ed8aa51 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224967.DUP_97671269.WXS.R.hg38 C224967 GBM WXS recurrent_tumor 7316UP-1273 c520a681-f3c5-4157-8b67-364ad4104265_wxs_gdc_realn.bam 37149938502 BAM harmonized CPTAC3 e72af532-2544-456c-beb7-03e7c6285da4 dbd50a58144863afffb399615af92024 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C224967.DUP_ef1b8e33.MethArray.Green.T C224967 GBM Methylation_Array tumor 7316UP-743 205705520055_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b500a541-9378-4e4c-88ab-66da85c4df36 79e729c911ac2d984e47d38769907d1b {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224967.DUP_ef1b8e33.MethArray.Red.T C224967 GBM Methylation_Array tumor 7316UP-743 205705520055_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2a4b881c-fbf2-4238-98a4-bd221e822821 f87bb0fe3dc909a45dfa8c8974b2b490 {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224967.DUP_ef1b8e33.WGS.T C224967 GBM WGS tumor 7316UP-743 7316UP-743.WholeGenome.RP-2158.bam 58240269975 BAM aligned CPTAC3 4578becb-41cf-4fc7-b259-ee6f44f09eaa aade7bc9761d2e3465391e09307baeff {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224967.DUP_ef1b8e33.WGS.T.hg38 C224967 GBM WGS tumor 7316UP-743 75069e02-ca1b-4e5d-bd9a-7e0996430dec_wgs_gdc_realn.bam 165788884307 BAM harmonized CPTAC3 fda005d3-c221-4963-8290-3cf5beadeb01 3c4dcb78ffde05188f0f602019a9bebe {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224967.DUP_ef1b8e33.WXS.T C224967 GBM WXS tumor 7316UP-743 7316UP-743.WholeExome.RP-1303.bam 31009431067 BAM aligned CPTAC3 dc44ea94-f178-4e1b-858b-a0f67cca2112 7e7177cc1a11ab3d1d8aa31148f43e5c {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224967.DUP_ef1b8e33.WXS.T.hg38 C224967 GBM WXS tumor 7316UP-743 75069e02-ca1b-4e5d-bd9a-7e0996430dec_wxs_gdc_realn.bam 109072739431 BAM harmonized CPTAC3 406c1599-e9aa-41f3-95d8-3126dece3c82 2d9000c96bf9f08e036ecb2cd60dd29c {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C224967.miRNA-Seq.R.hg38 C224967 GBM miRNA-Seq recurrent_tumor 7316UP-1273-1104786 83ba4279-220e-4b18-9b10-8685b9f3632c_mirnaseq_gdc_realn.bam 257329223 BAM harmonized CPTAC3 5203d565-a9f5-4627-aa5f-a7cad0cb9b99 6c3ee52eb0e13f62771fccf56afde2e2 {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor"} -C224967.miRNA-Seq.S20_L003_R1.T C224967 GBM miRNA-Seq tumor 7316UP-743-1104807 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 172958302 BAM S20_L003_R1 unaligned CPTAC3 8ae6c6ac-748f-4128-8d10-da7b703c9372 a06f15f14946a73288679000d92852a5 {"aliquot_tag": "ALQ_457645c3", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C224967.miRNA-Seq.S39_L002_R1.R C224967 GBM miRNA-Seq recurrent_tumor 7316UP-1273-1104786 210817_UNC31-K00269_0302_AHLCTHBBXY_TCGAAG_S39_L002_R1_001.unaln.bam 236059410 BAM S39_L002_R1 unaligned CPTAC3 3df7ec78-3abf-45d4-8ac4-8a098c64eb96 6d4c2ff744f1e41dfa6b467eda5daebf {"aliquot_tag": "ALQ_a8382d92", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C224967.miRNA-Seq.T.hg38 C224967 GBM miRNA-Seq tumor 7316UP-743-1104807 4a7a1f43-b4f6-44af-bf0e-7b839d7ada84_mirnaseq_gdc_realn.bam 193530803 BAM harmonized CPTAC3 de37781b-ef07-4921-8f08-cabea685470c 7209c129ce4abb3658b033b1471973ca {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor"} -C224967.RNA-Seq.chimeric.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.chimeric.gdc_realn.bam 30323269 BAM chimeric harmonized CPTAC3 364f4faa-f00e-49ef-970b-37b841ef8b35 51d631323f2820e8f88b9744e122b220 {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor"} -C224967.RNA-Seq.chimeric.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.chimeric.gdc_realn.bam 68534413 BAM chimeric harmonized CPTAC3 c3170a42-816c-4778-80c3-02858a103744 765e0827faa846346d0c3fbd4c142eea {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor"} -C224967.RNA-Seq.genomic.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.genomic.gdc_realn.bam 10839337672 BAM genomic harmonized CPTAC3 acbd502e-6250-448e-86a7-fdb7b3eb3ce7 74b3b2983ccbcd8eb18299bc2ba233dc {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor"} -C224967.RNA-Seq.genomic.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.genomic.gdc_realn.bam 10096056490 BAM genomic harmonized CPTAC3 fc2459b2-3b27-4621-b7f6-523d85a24427 ffcba4d32fc9f9338b25ab46a9392413 {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor"} -C224967.RNA-Seq.S2_L001_R1.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R1_001.fastq.gz 3216445001 FASTQ S2_L001_R1 unaligned CPTAC3 10469910-29ac-4d88-bc8c-42a9bd4cedf1 467e08a3038933a37fd6b3889602d72a {"aliquot_tag": "ALQ_457645c3", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C224967.RNA-Seq.S2_L001_R2.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R2_001.fastq.gz 3726614863 FASTQ S2_L001_R2 unaligned CPTAC3 e408bab8-2f30-42ba-9eeb-cc5c74ccfa0c b4887b93df864da46fa378a4374ab08e {"aliquot_tag": "ALQ_457645c3", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C224967.RNA-Seq.S30_L008_R1.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 3738509596 FASTQ S30_L008_R1 unaligned CPTAC3 1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c e6b731b3f4fe3e5e4f97863922b138d2 {"aliquot_tag": "ALQ_a8382d92", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C224967.RNA-Seq.S30_L008_R2.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4177127662 FASTQ S30_L008_R2 unaligned CPTAC3 f544bc29-8e0c-4054-b284-10d737bbf7fa b157aee2da7fad0c0a0bb826f0f7bfb9 {"aliquot_tag": "ALQ_a8382d92", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C224967.RNA-Seq.transcriptome.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.transcriptome.gdc_realn.bam 14270529357 BAM transcriptome harmonized CPTAC3 480838d5-3629-40fd-9a36-7e76fc4a1616 c3a7810d475dffac045842130b0dd8dd {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor"} -C224967.RNA-Seq.transcriptome.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.transcriptome.gdc_realn.bam 9732982069 BAM transcriptome harmonized CPTAC3 99b32129-2c2b-477b-bda2-938c9d72c35a 9472de58eda5e23228c617ed54d6d4ab {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor"} -C224967.WGS.R C224967 GBM WGS recurrent_tumor 7316UP-1273-1105249 7316UP-1273-1105249.WholeGenome.RP-2158.bam 45552404417 BAM aligned CPTAC3 44bc125a-5a87-4639-be3a-23e0d55a33cd 78c6125ab72d5a8d2f9714c84c9617c0 {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor"} -C224967.WGS.R.hg38 C224967 GBM WGS recurrent_tumor 7316UP-1273-1105249 8147fe67-4eaa-416d-b5cd-88979695055e_wgs_gdc_realn.bam 131842304442 BAM harmonized CPTAC3 fb85341b-132c-487f-b999-2ca9bcd90f2f 6b78aad0b7e9308d92f34eb696f712e6 {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor"} -C224967.WXS.N C224967 GBM WXS blood_normal 7316UP-743-1105291 7316UP-743-1105291.WholeExome.RP-1303.bam 26575645784 BAM aligned CPTAC3 9d3f989c-48b1-449b-9552-e9f9c47fd3be a62b4c12bea5582bb8552bb220518bb7 {"aliquot_tag": "ALQ_c8fcb90c", "gdc_sample_type": "Blood Derived Normal"} -C224967.WXS.N.hg38 C224967 GBM WXS blood_normal 7316UP-743-1105291 de2d3f21-8506-44b5-b2d4-194b8393dffa_wxs_gdc_realn.bam 36031479017 BAM harmonized CPTAC3 d02d8d09-e626-45ba-b5d5-a1910e38405f 9f2d73f961840586b098a2f2a47fa6be {"aliquot_tag": "ALQ_c8fcb90c", "gdc_sample_type": "Blood Derived Normal"} -C224967.WXS.R C224967 GBM WXS recurrent_tumor 7316UP-1273-1105249 7316UP-1273-1105249.WholeExome.RP-1303.bam 21705660534 BAM aligned CPTAC3 399d85bf-b1d9-4b95-bef3-dc2eea0211c5 38fc15dc9b25761a83a4c9b9561126e7 {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor"} -C224967.WXS.R.hg38 C224967 GBM WXS recurrent_tumor 7316UP-1273-1105249 8147fe67-4eaa-416d-b5cd-88979695055e_wxs_gdc_realn.bam 29632840126 BAM harmonized CPTAC3 3d802adb-e376-49a5-815e-6eaaab1b1acd c24aeb6189e9dbfd03fcbecc59320d0c {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor"} -C224967.WXS.T C224967 GBM WXS tumor 7316UP-743-1105199 7316UP-743-1105199.WholeExome.RP-1303.bam 25027597697 BAM aligned CPTAC3 4099c82e-80c2-44c2-935b-44c9ded7faae 861fcc1589cfb9b045ba18b016b949cf {"aliquot_tag": "ALQ_c4618f67", "gdc_sample_type": "Primary Tumor"} -C224967.WXS.T.hg38 C224967 GBM WXS tumor 7316UP-743-1105199 aac08359-e9fe-4cf7-b5e1-12cc6dfa6cf4_wxs_gdc_realn.bam 33904639770 BAM harmonized CPTAC3 63f77087-cd4f-4b87-a777-57a55abe245f e8e1c40752d291ee6756e5ca3ae00d69 {"aliquot_tag": "ALQ_c4618f67", "gdc_sample_type": "Primary Tumor"} -C229764.DUP_48c7f5e2.MethArray.Green.R C229764 GBM Methylation_Array recurrent_tumor 7316UP-2110 205705520162_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 08f543cf-ce57-48bc-89c6-7b5051512dc1 b4be3e822496aa84c80a03a5ca68cf94 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C229764.DUP_48c7f5e2.MethArray.Red.R C229764 GBM Methylation_Array recurrent_tumor 7316UP-2110 205705520162_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a03c58df-4dd2-41f7-8304-884fa6247a34 d650a3dd44d60aa7e78cf1d679363114 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C229764.DUP_48c7f5e2.WGS.R C229764 GBM WGS recurrent_tumor 7316UP-2110 7316UP-2110.WholeGenome.RP-2158.bam 48573711632 BAM aligned CPTAC3 8fa375f8-bd23-40c7-98b1-7f120b10f23c 7ba18414fc18d12a46b4d05a3e3eeb64 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C229764.DUP_48c7f5e2.WGS.R.hg38 C229764 GBM WGS recurrent_tumor 7316UP-2110 95dbfbd1-8615-4dc6-bae8-046c386d254b_wgs_gdc_realn.bam 144409383521 BAM harmonized CPTAC3 57f3f9b0-e62f-4314-9797-0f674d15c40f 0d639daa07fbea46f25c8e0d357b76a2 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C229764.DUP_48c7f5e2.WXS.R C229764 GBM WXS recurrent_tumor 7316UP-2110 7316UP-2110.WholeExome.RP-1303.bam 24570787243 BAM aligned CPTAC3 efe58f46-f317-4800-8c7c-bf88eae7ee03 f2fee4a072bc7f5bfba52f7016bd838c {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C229764.DUP_48c7f5e2.WXS.R.hg38 C229764 GBM WXS recurrent_tumor 7316UP-2110 95dbfbd1-8615-4dc6-bae8-046c386d254b_wxs_gdc_realn.bam 33106683650 BAM harmonized CPTAC3 8e1d0018-334e-42c4-89de-8f59de3b608a 89990717ccc6bf754176683548238638 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C229764.miRNA-Seq.R.hg38 C229764 GBM miRNA-Seq recurrent_tumor 7316UP-2110-1104776 b3193f92-588e-49d1-9ef3-5516f775b677_mirnaseq_gdc_realn.bam 335094068 BAM harmonized CPTAC3 eb2eec14-d46f-40b7-b0ef-095c418130f0 4665a796ea51addca039778cf5455feb {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor"} -C229764.miRNA-Seq.S12_L001_R1.R C229764 GBM miRNA-Seq recurrent_tumor 7316UP-2110-1104776 210817_UNC31-K00269_0302_AHLCTHBBXY_CGGAAT_S12_L001_R1_001.unaln.bam 301422328 BAM S12_L001_R1 unaligned CPTAC3 107a7e23-4b45-431a-808f-f24ff8bfd125 e96783b1b540c2fd9a3012479e67afa4 {"aliquot_tag": "ALQ_f54fc92e", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C229764.miRNA-Seq.S15_L001_R1.T C229764 GBM miRNA-Seq tumor 7316UP-109-1104779 210817_UNC31-K00269_0302_AHLCTHBBXY_CTCAGA_S15_L001_R1_001.unaln.bam 234792723 BAM S15_L001_R1 unaligned CPTAC3 fbc18909-5047-49b6-b0b4-575bf1147844 6aed41a40f6789c5c6e499bb19a26447 {"aliquot_tag": "ALQ_92a35999", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C229764.miRNA-Seq.T.hg38 C229764 GBM miRNA-Seq tumor 7316UP-109-1104779 d8a8ed73-29de-4eb0-93b6-b19f0634c0f0_mirnaseq_gdc_realn.bam 272723935 BAM harmonized CPTAC3 ee020aff-f14e-4e47-b639-41a927d9d037 0c98af92d9e600ceb4cb12711ef3bc65 {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor"} -C229764.RNA-Seq.chimeric.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.chimeric.gdc_realn.bam 41099436 BAM chimeric harmonized CPTAC3 8524b6c4-5cfd-4339-aad2-b5643be343c7 2ab92d76d71267e1510ea69afc5bc8b1 {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor"} -C229764.RNA-Seq.chimeric.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.chimeric.gdc_realn.bam 55566293 BAM chimeric harmonized CPTAC3 d4f71f9c-c2fc-410c-8207-9bc3665f33d1 9e2e8273f38235b9c134d162ae098bc7 {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor"} -C229764.RNA-Seq.genomic.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.genomic.gdc_realn.bam 6839473839 BAM genomic harmonized CPTAC3 84b8535b-d50c-4972-9a69-834b0c496868 55d1be4ec81cd6e50ff701dc177c2d18 {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor"} -C229764.RNA-Seq.genomic.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.genomic.gdc_realn.bam 8876149296 BAM genomic harmonized CPTAC3 10e482d1-5af7-4a99-bce4-eb0341dfa3ed 936974b06774a305f77a3421636966ae {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor"} -C229764.RNA-Seq.S11_L003_R1.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R1_001.fastq.gz 4111525485 FASTQ S11_L003_R1 unaligned CPTAC3 32c3d5c1-3381-4ec0-b60d-414d6275cbf0 695953ee28e4d63be93336ca22fe364f {"aliquot_tag": "ALQ_92a35999", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C229764.RNA-Seq.S11_L003_R2.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R2_001.fastq.gz 4429273944 FASTQ S11_L003_R2 unaligned CPTAC3 fda85eb9-8e12-427b-87f4-72c840b59a49 2c91fc7eafa8b73bef772fb316b27f41 {"aliquot_tag": "ALQ_92a35999", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C229764.RNA-Seq.S9_L003_R1.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R1_001.fastq.gz 3252755048 FASTQ S9_L003_R1 unaligned CPTAC3 c530183b-3935-4d0a-a887-aa028b77f774 a39446603df4a6096eddf88efb543341 {"aliquot_tag": "ALQ_f54fc92e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C229764.RNA-Seq.S9_L003_R2.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R2_001.fastq.gz 3465575112 FASTQ S9_L003_R2 unaligned CPTAC3 d5fbc2da-be05-466a-9433-309fcd49c80e 9035d0f028ee3596d830327f8e5eb75b {"aliquot_tag": "ALQ_f54fc92e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C229764.RNA-Seq.transcriptome.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.transcriptome.gdc_realn.bam 15046438368 BAM transcriptome harmonized CPTAC3 d6b35596-8b2e-47b4-93c4-15ce78106712 06e8e91c9c46a13bc8b6568f55156b7a {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor"} -C229764.RNA-Seq.transcriptome.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.transcriptome.gdc_realn.bam 19591889660 BAM transcriptome harmonized CPTAC3 f4434914-5527-4693-a117-71220abe2e40 a45ca7726ee04f2009d145eee43b7158 {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor"} -C229764.WGS.N C229764 GBM WGS blood_normal 7316UP-1359-1105275 7316UP-1359-1105275.WholeGenome.RP-2158.bam 53215888402 BAM aligned CPTAC3 b9ba5b0f-051d-4473-a57f-ce4c49cfd25e 96ebd239c14cb582fcd4ec7574b6dd86 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal"} -C229764.WGS.N.hg38 C229764 GBM WGS blood_normal 7316UP-1359-1105275 7733096d-86eb-4bc6-b8a6-95b571be3af6_wgs_gdc_realn.bam 156335496900 BAM harmonized CPTAC3 3f00fbf7-325a-4da0-b5bc-307b35475f41 14a63a441b8e3be7186fa01c9ef47098 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal"} -C229764.WGS.R C229764 GBM WGS recurrent_tumor 7316UP-2110-1105239 7316UP-2110-1105239.WholeGenome.RP-2158.bam 69328226067 BAM aligned CPTAC3 469debd9-3972-41fa-b086-a3f552d60a0a e90361cb358d4070175f584d720920ef {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor"} -C229764.WGS.R.hg38 C229764 GBM WGS recurrent_tumor 7316UP-2110-1105239 bd5d6c5d-8def-4f58-a5c6-a9b29d75deee_wgs_gdc_realn.bam 197192726740 BAM harmonized CPTAC3 9c8669b6-ad42-4dd7-828e-b4e6cf6f227e 8a8acd9e330b6438b700f44928dfbbe9 {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor"} -C229764.WGS.T C229764 GBM WGS tumor 7316UP-109-1105242 7316UP-109-1105242.WholeGenome.RP-2158.bam 50355188086 BAM aligned CPTAC3 4d268b30-5092-4aa4-a709-49ceb721bf33 0fd9b2d4d618dba2bef0f4624985a881 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor"} -C229764.WGS.T.hg38 C229764 GBM WGS tumor 7316UP-109-1105242 ac8d4e2a-cbf6-4679-b022-ab0518e1ae21_wgs_gdc_realn.bam 153712017045 BAM harmonized CPTAC3 91eeaff0-8519-4a8f-9860-bddad9f65edc cf29132d69dd3f72d2bd741579bc5844 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor"} -C229764.WXS.N C229764 GBM WXS blood_normal 7316UP-1359-1105275 7316UP-1359-1105275.WholeExome.RP-1303.bam 26629160944 BAM aligned CPTAC3 ba1c0111-e1d0-412a-b58a-ba69241486f7 1aa2fa4ce21dd64c0fc1c3d5947788c0 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal"} -C229764.WXS.N.hg38 C229764 GBM WXS blood_normal 7316UP-1359-1105275 7733096d-86eb-4bc6-b8a6-95b571be3af6_wxs_gdc_realn.bam 36069064590 BAM harmonized CPTAC3 b39d806b-6907-4b17-b822-b9f17b2d8be2 e5656236bbf156f7efeba41bd7f76bc3 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal"} -C229764.WXS.R C229764 GBM WXS recurrent_tumor 7316UP-2110-1105239 7316UP-2110-1105239.WholeExome.RP-1303.bam 32693049354 BAM aligned CPTAC3 9443852b-2959-4d43-8e1f-4e88b44427bd 67142e1828686f7de45067b876d9dd39 {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor"} -C229764.WXS.R.hg38 C229764 GBM WXS recurrent_tumor 7316UP-2110-1105239 bd5d6c5d-8def-4f58-a5c6-a9b29d75deee_wxs_gdc_realn.bam 44015856796 BAM harmonized CPTAC3 b4845ff0-b4f1-4eaf-8157-904e149293a7 4f03f98f942e8a7d260ab3a47cbc87ba {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor"} -C229764.WXS.T C229764 GBM WXS tumor 7316UP-109-1105242 7316UP-109-1105242.WholeExome.RP-1303.bam 29536235729 BAM aligned CPTAC3 0483328a-3997-42e0-b9a3-b05d5c0b3caa dc050ffac908ccc496dab85013be2c25 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor"} -C229764.WXS.T.hg38 C229764 GBM WXS tumor 7316UP-109-1105242 ac8d4e2a-cbf6-4679-b022-ab0518e1ae21_wxs_gdc_realn.bam 40270433118 BAM harmonized CPTAC3 0858e1ec-6d27-4654-9a9d-ac8d08173e1a c86dea33b23533eb22572c0dabbd7507 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor"} -C231855.DUP_40a9c1b9.MethArray.Green.T C231855 GBM Methylation_Array tumor 7316UP-160 205707890106_R01C01_Grn.idat 13677901 IDAT Green NA CPTAC3 0901786f-574b-4f04-b20f-757e7f2faf74 6e05a44e895b04ec3f8e5ccb721ed8c2 {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C231855.DUP_40a9c1b9.MethArray.Red.T C231855 GBM Methylation_Array tumor 7316UP-160 205707890106_R01C01_Red.idat 13677901 IDAT Red NA CPTAC3 a5d3cfa1-7532-41cf-bcd2-143b08da96f2 a5ed924d837365764d706b862619dc05 {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C231855.DUP_40a9c1b9.WGS.T C231855 GBM WGS tumor 7316UP-160 7316UP-160.WholeGenome.RP-2158.bam 52825456796 BAM aligned CPTAC3 f0e32f34-00b0-429a-b9fc-697388a7c224 63b095da1dde6e564e64d109d7bd66b4 {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C231855.DUP_40a9c1b9.WGS.T.hg38 C231855 GBM WGS tumor 7316UP-160 8b5d164f-881e-476b-ad10-84e8b23a9601_wgs_gdc_realn.bam 161707686407 BAM harmonized CPTAC3 2ff2adc1-3b80-4db3-99ab-edb05cd0e375 16bea488d8e0569c670cb10a19a6980a {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C231855.DUP_40a9c1b9.WXS.T C231855 GBM WXS tumor 7316UP-160 7316UP-160.WholeExome.RP-1303.bam 22236292610 BAM aligned CPTAC3 11d145b2-db2c-459a-aceb-db63d81a4a5e 1e9410e4143f1673a6d51d68c543d85d {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C231855.DUP_40a9c1b9.WXS.T.hg38 C231855 GBM WXS tumor 7316UP-160 8b5d164f-881e-476b-ad10-84e8b23a9601_wxs_gdc_realn.bam 30332109330 BAM harmonized CPTAC3 aea7e706-e796-4b1f-bb99-40a333b400e9 e2d8ec7eb8780e225fc375bb47f9175b {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C231855.miRNA-Seq.R.hg38 C231855 GBM miRNA-Seq recurrent_tumor 7316UP-421-1104795 f2d89a7e-919f-44da-af58-f12a713869e9_mirnaseq_gdc_realn.bam 192906602 BAM harmonized CPTAC3 ecb6a23b-da26-42db-81d2-af65b3cc26c4 56152873e6ee151d34b5790b27fe20cb {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor"} -C231855.miRNA-Seq.S11_L002_R1.T C231855 GBM miRNA-Seq tumor 7316UP-160-1104784 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L002_R1_001.unaln.bam 307910922 BAM S11_L002_R1 unaligned CPTAC3 2873f023-f443-477c-8520-be60df760482 e35100b6aeabb9d3a4c83c7f838f9e68 {"aliquot_tag": "ALQ_ca37fff7", "sample": "S11", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C231855.miRNA-Seq.S23_L002_R1.R C231855 GBM miRNA-Seq recurrent_tumor 7316UP-421-1104795 210817_UNC31-K00269_0302_AHLCTHBBXY_ACTTGA_S23_L002_R1_001.unaln.bam 168987687 BAM S23_L002_R1 unaligned CPTAC3 06659363-cbdb-4a45-b54f-69521e2def39 b75a10cdd03feb013a83b8c074bfa780 {"aliquot_tag": "ALQ_cbece65b", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C231855.miRNA-Seq.T.hg38 C231855 GBM miRNA-Seq tumor 7316UP-160-1104784 7458187d-8cc9-4c51-9ff8-e1a981b7b656_mirnaseq_gdc_realn.bam 355835909 BAM harmonized CPTAC3 1e7f70bd-a31e-4f0c-891b-e272aa2fbc16 33b5b1335e080c26ec4ac2249d3ffea2 {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor"} -C231855.RNA-Seq.chimeric.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.chimeric.gdc_realn.bam 66296900 BAM chimeric harmonized CPTAC3 b0a9653e-ea87-44f0-bc39-006de70245a0 eeb8ff6a619a6ce74cf864b6691679d0 {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor"} -C231855.RNA-Seq.chimeric.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.chimeric.gdc_realn.bam 74542577 BAM chimeric harmonized CPTAC3 3230e199-e328-4dfe-81c3-1dffe38d3f24 ded2738ecbe906ccc61480fed64d91a0 {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor"} -C231855.RNA-Seq.genomic.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.genomic.gdc_realn.bam 8833797711 BAM genomic harmonized CPTAC3 6bcf1557-1dfe-44cb-a005-536aadf106be 731372c496b7bd8794a416a062e597d2 {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor"} -C231855.RNA-Seq.genomic.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.genomic.gdc_realn.bam 10544458404 BAM genomic harmonized CPTAC3 d78dc8a2-5618-4c76-93c8-05c1ff4a893a d2f1d5a4dba4f633c5294c26d11561cf {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor"} -C231855.RNA-Seq.S3_L001_R1.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R1_001.fastq.gz 3391269224 FASTQ S3_L001_R1 unaligned CPTAC3 5b018459-1fb0-458c-8d4b-40d6ace7089e ce026a24fc6e1bbe4c13f441f94f55da {"aliquot_tag": "ALQ_cbece65b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C231855.RNA-Seq.S3_L001_R2.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R2_001.fastq.gz 3882186982 FASTQ S3_L001_R2 unaligned CPTAC3 9d90d560-17cb-4038-a922-8e5f8d738b82 44abf091804b24627965df3cf9e17648 {"aliquot_tag": "ALQ_cbece65b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C231855.RNA-Seq.S9_L003_R1.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R1_001.fastq.gz 4752824534 FASTQ S9_L003_R1 unaligned CPTAC3 6a569c62-2dfe-4109-803d-dab5026bfec2 b78042be5bd11ead6f84cfc811983fd3 {"aliquot_tag": "ALQ_ca37fff7", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C231855.RNA-Seq.S9_L003_R2.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R2_001.fastq.gz 5069843304 FASTQ S9_L003_R2 unaligned CPTAC3 e487d435-f110-46da-9ed6-58814f3d33c4 8d70933e52650efd4db13d48eac69199 {"aliquot_tag": "ALQ_ca37fff7", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C231855.RNA-Seq.transcriptome.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.transcriptome.gdc_realn.bam 9492637133 BAM transcriptome harmonized CPTAC3 ffb5246f-3957-4b18-bcd8-3c26805809d6 e8e082d79c8bca6322c8dc24caab1137 {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor"} -C231855.RNA-Seq.transcriptome.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.transcriptome.gdc_realn.bam 14972339378 BAM transcriptome harmonized CPTAC3 4cf0db20-dff2-4549-b0b9-ae91e8307fce a1942cccb63ec600136bc3a23a4a1747 {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor"} -C231855.WGS.R C231855 GBM WGS recurrent_tumor 7316UP-421-1105260 7316UP-421-1105260.WholeGenome.RP-2158.bam 71075559854 BAM aligned CPTAC3 d3f53b40-80ff-4eb2-bbba-451850dcd22b 08eba3c821f43a3e34f3c5853b0cda05 {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor"} -C231855.WGS.R.hg38 C231855 GBM WGS recurrent_tumor 7316UP-421-1105260 0a571249-9aa4-462a-97bc-b7e5ff23877c_wgs_gdc_realn.bam 210393794712 BAM harmonized CPTAC3 f57977b1-d154-4977-83a8-40a159f17710 fc48472567b8950e24723b0809ea2b87 {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor"} -C231855.WXS.N C231855 GBM WXS blood_normal 7316UP-421-1105288 7316UP-421-1105288.WholeExome.RP-1303.bam 20989442407 BAM aligned CPTAC3 a5f3e504-6c0f-4d0a-87a1-3d084a2f2734 b3327cf39590ba0487c935545ebd4238 {"aliquot_tag": "ALQ_12310e29", "gdc_sample_type": "Blood Derived Normal"} -C231855.WXS.N.hg38 C231855 GBM WXS blood_normal 7316UP-421-1105288 3fe163be-784a-408f-b167-9b1f65f2221e_wxs_gdc_realn.bam 28435638577 BAM harmonized CPTAC3 d03b4742-4fce-4819-8017-5644f76432ac 414556d35f7f730a2041b0ff93670c9a {"aliquot_tag": "ALQ_12310e29", "gdc_sample_type": "Blood Derived Normal"} -C231855.WXS.R C231855 GBM WXS recurrent_tumor 7316UP-421-1105260 7316UP-421-1105260.WholeExome.RP-1303.bam 27632790176 BAM aligned CPTAC3 cf798c5b-546f-48b6-ac81-c41d4bf465a0 22481c96d46b469c8a3953bcc8afa9dc {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor"} -C231855.WXS.R.hg38 C231855 GBM WXS recurrent_tumor 7316UP-421-1105260 0a571249-9aa4-462a-97bc-b7e5ff23877c_wxs_gdc_realn.bam 37396260309 BAM harmonized CPTAC3 c1fafb36-a4b7-4d78-9e52-11ad1f7d350f 6bd4353a2744383b64e96a16116fe204 {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor"} -C231855.WXS.T C231855 GBM WXS tumor 7316UP-160-1105247 7316UP-160-1105247.WholeExome.RP-1303.bam 23334674687 BAM aligned CPTAC3 379396e7-9602-4738-a39c-05ba14b6b2d8 7e8015254903fead24fa6d7edea66100 {"aliquot_tag": "ALQ_41fc44cf", "gdc_sample_type": "Primary Tumor"} -C231855.WXS.T.hg38 C231855 GBM WXS tumor 7316UP-160-1105247 ca322924-b07a-4fbb-8634-78e26e197671_wxs_gdc_realn.bam 32063571055 BAM harmonized CPTAC3 f12a807d-d1e9-4c32-a4ac-798ff0359c82 d47422753e5092d8f1b139f6aede15c0 {"aliquot_tag": "ALQ_41fc44cf", "gdc_sample_type": "Primary Tumor"} -C234192.DUP_27ea3fbd.WGS.R C234192 GBM WGS recurrent_tumor 7316UP-1206-1105262 7316UP-1206-1105262.WholeGenome.RP-2158.bam 76244971420 BAM aligned CPTAC3 aa9a65b4-2314-476e-900f-53f5982d3ae4 735e0c01070a39b3ecca8bc118111c2d {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_27ea3fbd.WGS.R.hg38 C234192 GBM WGS recurrent_tumor 7316UP-1206-1105262 cc53cc56-d2d1-4e0d-9abb-fdebc31cfefb_wgs_gdc_realn.bam 233125734014 BAM harmonized CPTAC3 43a2c88a-f40a-46dc-a8ff-31e4865e89ae bba708aef1f6e6fa807f4644f51dfed0 {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_27ea3fbd.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-1206-1105262 7316UP-1206-1105262.WholeExome.RP-1303.bam 31598002776 BAM aligned CPTAC3 8486ea12-0703-402e-98fe-20dc5fe589ae 7846bc703606e7a3d76f523668914855 {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_27ea3fbd.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-1206-1105262 cc53cc56-d2d1-4e0d-9abb-fdebc31cfefb_wxs_gdc_realn.bam 43324496713 BAM harmonized CPTAC3 55283a5b-910b-4090-a30b-3cab97864ea2 39523c20b3470c0fdb633ecf8730020a {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_34cd9d6c.MethArray.Green.R C234192 GBM Methylation_Array recurrent_tumor 7316UP-386 205854140148_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b5a41b87-53b1-4836-a68e-b450b02d2f05 fb61820aaf852ce65f1276cafe4accc3 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_34cd9d6c.MethArray.Red.R C234192 GBM Methylation_Array recurrent_tumor 7316UP-386 205854140148_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 b0c6a30e-810a-46c3-bdcb-9391383b91b9 a22e676d136207cd14470f2255ad7f06 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_34cd9d6c.WGS.R C234192 GBM WGS recurrent_tumor 7316UP-386 7316UP-386.WholeGenome.RP-2158.bam 47559885675 BAM aligned CPTAC3 cf5bb143-0b74-4d0d-a847-0eb11c1ca7a1 745bef1e90150ca2b3396edc36ef0aa9 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_34cd9d6c.WGS.R.hg38 C234192 GBM WGS recurrent_tumor 7316UP-386 718fac36-5644-4dff-a838-c2722578ac31_wgs_gdc_realn.bam 139319538853 BAM harmonized CPTAC3 fa6f4cf6-3d89-48d3-8505-765cfdf77f96 eb0fbbfd2ffd7b38175d84bea23c3065 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_34cd9d6c.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-386 7316UP-386.WholeExome.RP-1303.bam 22730648817 BAM aligned CPTAC3 443f69b6-ca13-48ca-934b-a1a8e5b89703 221351910a8a5d5bde697e227d49498a {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_34cd9d6c.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-386 718fac36-5644-4dff-a838-c2722578ac31_wxs_gdc_realn.bam 30881439246 BAM harmonized CPTAC3 3a5e6d4c-ea90-43d6-8f40-c8f954c75eef 76e6f6472697d9236c6dbc6d0f2e99bc {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_35bb8e11.miRNA-Seq.R.hg38 C234192 GBM miRNA-Seq recurrent_tumor 7316UP-386-1104808 e1a91e29-39a5-4a32-aac4-d926ddd3db07_mirnaseq_gdc_realn.bam 231162912 BAM harmonized CPTAC3 dcb136eb-e500-4a94-99e6-46f5cb0454e5 a2123427afbb9e65c18b0eabc9acad53 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_35bb8e11.miRNA-Seq.S21_L003_R1.R C234192 GBM miRNA-Seq recurrent_tumor 7316UP-386-1104808 210817_UNC31-K00269_0302_AHLCTHBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 210647428 BAM S21_L003_R1 unaligned CPTAC3 3c87754d-a3ec-49f7-99d8-93c5db1e5e67 4c4c10cad82d6465c4fb6d309880e984 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_35bb8e11.RNA-Seq.chimeric.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.chimeric.gdc_realn.bam 31769534 BAM chimeric harmonized CPTAC3 42eef9de-27b5-4b71-b183-3d9e68cb99aa 4b9446aec5b78898a2d22281cdc99a76 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_35bb8e11.RNA-Seq.genomic.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.genomic.gdc_realn.bam 10506958714 BAM genomic harmonized CPTAC3 c57c71d3-45fc-4889-a770-d67120fd12d2 415a222ba9ae8213add79f8242f7fca4 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_35bb8e11.RNA-Seq.S32_L008_R1.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 3276824441 FASTQ S32_L008_R1 unaligned CPTAC3 7d500c68-fbb2-4d68-b501-7cca903b17cf 0cc8ed8d553275159584e75a2ebe6d27 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_35bb8e11.RNA-Seq.S32_L008_R2.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 3631457607 FASTQ S32_L008_R2 unaligned CPTAC3 6df26d5c-8487-48eb-aa55-66cb6c2b7da0 4bfd931358597f98ebded555d321642d {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_35bb8e11.RNA-Seq.transcriptome.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.transcriptome.gdc_realn.bam 13160264268 BAM transcriptome harmonized CPTAC3 30296540-b3cb-40be-a6c2-5b5f7acf8fdd 35c7f8930ea1ef638db2441e276fdca1 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C234192.DUP_a92ddca1.MethArray.Green.T C234192 GBM Methylation_Array tumor 7316UP-181 205705520023_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9087bd0c-870f-4f08-a08a-7b09d07ee992 6663b656283a87a3e3307ed37ab14b35 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C234192.DUP_a92ddca1.MethArray.Red.T C234192 GBM Methylation_Array tumor 7316UP-181 205705520023_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 986b983e-2949-4203-8176-2dc0c973c368 5469b4f417044838242b046b3b69921d {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C234192.DUP_a92ddca1.WGS.T C234192 GBM WGS tumor 7316UP-181 7316UP-181.WholeGenome.RP-2158.bam 56435788273 BAM aligned CPTAC3 9b1b261c-695e-4a48-a3ad-9d7ec0a8f963 2c55f98e0ec18b4b558106797bcbaf38 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C234192.DUP_a92ddca1.WGS.T.hg38 C234192 GBM WGS tumor 7316UP-181 4eae5599-7c20-444f-8253-fc4a0195d96f_wgs_gdc_realn.bam 171448754175 BAM harmonized CPTAC3 9d005027-e1bb-44f6-9d63-70a019164acd f544e25249f474a9084bac6a3c8240e1 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C234192.DUP_a92ddca1.WXS.T C234192 GBM WXS tumor 7316UP-181 7316UP-181.WholeExome.RP-1303.bam 22982636961 BAM aligned CPTAC3 4474df2a-caa8-4b06-898a-397c1ac6da64 2c5d61ed98dbb5fa832eee0c6954eb41 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C234192.DUP_a92ddca1.WXS.T.hg38 C234192 GBM WXS tumor 7316UP-181 4eae5599-7c20-444f-8253-fc4a0195d96f_wxs_gdc_realn.bam 31626617554 BAM harmonized CPTAC3 391bf1c9-43e5-4e52-b602-a8014c059dbc 76722e1a544e5627eccf19f801801a39 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C234192.miRNA-Seq.R.hg38 C234192 GBM miRNA-Seq recurrent_tumor 7316UP-1206-1104797 48be9f1d-0af2-4679-bc13-5c2929c33e70_mirnaseq_gdc_realn.bam 396603027 BAM harmonized CPTAC3 cb180774-a0fd-4bc7-ac91-f39af7f22073 a136d3732bd08aecfc28bd6fe994c3e1 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor"} -C234192.miRNA-Seq.S35_L002_R1.R C234192 GBM miRNA-Seq recurrent_tumor 7316UP-1206-1104797 210817_UNC31-K00269_0302_AHLCTHBBXY_TAGCTT_S35_L002_R1_001.unaln.bam 337424563 BAM S35_L002_R1 unaligned CPTAC3 da2d041c-64f8-43f6-a183-bd7e72cbf810 74ab7b7629739583f329f94ccc219e2e {"aliquot_tag": "ALQ_6e6f7273", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C234192.miRNA-Seq.S3_L003_R1.T C234192 GBM miRNA-Seq tumor 7316UP-181-1104815 210817_UNC31-K00269_0302_AHLCTHBBXY_CAAAAG_S3_L003_R1_001.unaln.bam 364681995 BAM S3_L003_R1 unaligned CPTAC3 5a67cf00-8cc1-44c0-ae73-eea18f081b02 ae10d60d23e649c6352a416d05322297 {"aliquot_tag": "ALQ_6e1c17e5", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C234192.miRNA-Seq.T.hg38 C234192 GBM miRNA-Seq tumor 7316UP-181-1104815 0e75fd15-2035-496d-9d58-9c7d3fc8b62b_mirnaseq_gdc_realn.bam 415908166 BAM harmonized CPTAC3 a204c481-32de-4cb2-a68e-79dc9a33d63a a520cc79b05f2e27019a745dac2114d9 {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor"} -C234192.RNA-Seq.chimeric.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.chimeric.gdc_realn.bam 64226114 BAM chimeric harmonized CPTAC3 ca080da5-cc19-424e-92b4-2d71120af556 fe5c53ed91086e9539aab2b94d418407 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor"} -C234192.RNA-Seq.chimeric.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.chimeric.gdc_realn.bam 51744846 BAM chimeric harmonized CPTAC3 28deee9d-5c29-41a3-b0a5-ce3789712717 4d490bc5350b7eb5bda84c82e339072e {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor"} -C234192.RNA-Seq.genomic.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.genomic.gdc_realn.bam 8269927080 BAM genomic harmonized CPTAC3 158def60-2226-4585-a3e7-e68c551de793 2c7f5366754af856bfc9c5350e0668f1 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor"} -C234192.RNA-Seq.genomic.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.genomic.gdc_realn.bam 9553842168 BAM genomic harmonized CPTAC3 0acda018-6eab-45bb-ac39-40f65cecdcd7 3413c73d3058ad4f0e65d19f7f1ef856 {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor"} -C234192.RNA-Seq.S12_L003_R1.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R1_001.fastq.gz 3736027921 FASTQ S12_L003_R1 unaligned CPTAC3 c50ba18b-ea56-4579-a48e-bc82936d96c8 0f714076ff8ce7e1a1fdb40ff2c8f93d {"aliquot_tag": "ALQ_6e6f7273", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C234192.RNA-Seq.S12_L003_R2.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R2_001.fastq.gz 4022993051 FASTQ S12_L003_R2 unaligned CPTAC3 e1e78f00-8882-40ae-aba4-7ccfd12a4996 e55040492dc7e715c3103a443343026f {"aliquot_tag": "ALQ_6e6f7273", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C234192.RNA-Seq.S29_L008_R1.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 3615865895 FASTQ S29_L008_R1 unaligned CPTAC3 928d940f-3a8a-43aa-894f-792e0d1d5468 cbc162fede09e521a538235c9ea9d4e6 {"aliquot_tag": "ALQ_6e1c17e5", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C234192.RNA-Seq.S29_L008_R2.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 3963289098 FASTQ S29_L008_R2 unaligned CPTAC3 f419b308-3b44-43cd-8515-43e351c9b2a9 00b70bc3b175d5dcbc54737be6bc11ea {"aliquot_tag": "ALQ_6e1c17e5", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C234192.RNA-Seq.transcriptome.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.transcriptome.gdc_realn.bam 13720404909 BAM transcriptome harmonized CPTAC3 479bb3b7-d7f0-4de3-b9ba-7d3da1d21516 d7a00bb07d8960f49a8c454651aa1379 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor"} -C234192.RNA-Seq.transcriptome.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.transcriptome.gdc_realn.bam 15348891760 BAM transcriptome harmonized CPTAC3 1377c10c-a411-47af-9326-0de1286ffd71 fc9288ca4f4cf94df3f60b643a7af441 {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor"} -C234192.WXS.N C234192 GBM WXS blood_normal 7316UP-386-1105286 7316UP-386-1105286.WholeExome.RP-1303.bam 24199574526 BAM aligned CPTAC3 f7aa4be1-0506-4b92-ab15-2c6aa8e84e10 a76ba70df3378021a952eaf51dd21279 {"aliquot_tag": "ALQ_aff1cbad", "gdc_sample_type": "Blood Derived Normal"} -C234192.WXS.N.hg38 C234192 GBM WXS blood_normal 7316UP-386-1105286 d8eaf68c-8262-4df9-86f0-853fe53f50da_wxs_gdc_realn.bam 32914041533 BAM harmonized CPTAC3 a4bab68e-9662-4e8a-8b06-8db9204db099 c7322cd652b839f68ee53126ca73de06 {"aliquot_tag": "ALQ_aff1cbad", "gdc_sample_type": "Blood Derived Normal"} -C234192.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-386-1105200 7316UP-386-1105200.WholeExome.RP-1303.bam 20806055854 BAM aligned CPTAC3 7da8daf1-63dc-454c-beae-7c7ddd6a8500 daa94493f545d94e1f2811ebc4522d34 {"aliquot_tag": "ALQ_8e4be490", "gdc_sample_type": "Recurrent Tumor"} -C234192.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-386-1105200 627c4b60-2f6f-4fbf-aed9-2d2d85c7bf5e_wxs_gdc_realn.bam 28225214010 BAM harmonized CPTAC3 a1d7b018-9c49-4102-9ddc-e9dbc8849188 090bdd835c10172092c05858f7790938 {"aliquot_tag": "ALQ_8e4be490", "gdc_sample_type": "Recurrent Tumor"} -C234192.WXS.T C234192 GBM WXS tumor 7316UP-181-1105194 7316UP-181-1105194.WholeExome.RP-1303.bam 25971653894 BAM aligned CPTAC3 b6c516d7-ef12-420e-8bf5-bde06419732f 6c206fd9b0e7b3d6819cd203cea7f2d5 {"aliquot_tag": "ALQ_66aff191", "gdc_sample_type": "Primary Tumor"} -C234192.WXS.T.hg38 C234192 GBM WXS tumor 7316UP-181-1105194 d774c07e-df68-4037-983e-1b21d267226b_wxs_gdc_realn.bam 35443786397 BAM harmonized CPTAC3 00d428d0-e8fc-4662-a0fa-cabc09e83c20 1aaf8e61a78f3f0f3751fa2e5c9b703e {"aliquot_tag": "ALQ_66aff191", "gdc_sample_type": "Primary Tumor"} -C2415597.DUP_6b347d64.WGS.T C2415597 GBM WGS tumor 7316UP-3213 7316UP-3213.WholeGenome.RP-2158.bam 46717989960 BAM aligned CPTAC3 6d9c3282-901f-4e5d-b88d-83dcb8420cf5 6af921d98ab4e2a69de87a906e701282 {"aliquot_tag": "DUP_6b347d64", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C2415597.DUP_6b347d64.WGS.T.hg38 C2415597 GBM WGS tumor 7316UP-3213 756fcc28-8e14-4f0e-8bf7-183faf9eac38_wgs_gdc_realn.bam 125043248439 BAM harmonized CPTAC3 80a726e3-4517-48d1-ae34-183300dc3541 1f617c5562eaf117d5cdc534fdf5aab6 {"aliquot_tag": "DUP_6b347d64", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C2415597.DUP_9de3473e.MethArray.Green.R C2415597 GBM Methylation_Array recurrent_tumor 7316UP-3301 205854120012_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 761bb9fa-b650-47b4-b493-c99cee85e208 2e05a5f0c43a60872a00d9b838abc221 {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C2415597.DUP_9de3473e.MethArray.Red.R C2415597 GBM Methylation_Array recurrent_tumor 7316UP-3301 205854120012_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2d4a84dc-f721-4129-97a9-a5c795530243 58cf9a92852a304891bfa66e2e8053dd {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C2415597.DUP_9de3473e.WGS.R C2415597 GBM WGS recurrent_tumor 7316UP-3301 7316UP-3301.WholeGenome.RP-2158.bam 40445705826 BAM aligned CPTAC3 5653b18d-31d5-42b5-95f8-94f92d8a9534 13df5b4dca993f2a65df41e61a738b78 {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C2415597.DUP_9de3473e.WGS.R.hg38 C2415597 GBM WGS recurrent_tumor 7316UP-3301 f8beab6f-a02c-4808-9525-1f031d13e85d_wgs_gdc_realn.bam 123926313636 BAM harmonized CPTAC3 da2fff2b-dc60-4c30-a008-70f698887d99 e5f2dfd9a39022a1645ade71c3d743fe {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C2415597.DUP_9de3473e.WXS.R C2415597 GBM WXS recurrent_tumor 7316UP-3301 7316UP-3301.WholeExome.RP-1303.bam 24074428846 BAM aligned CPTAC3 f020ea7e-b765-4680-bb04-a5d01cbb7445 fe3f5c635c9bb25c77c6e6c578813929 {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C2415597.DUP_9de3473e.WXS.R.hg38 C2415597 GBM WXS recurrent_tumor 7316UP-3301 f8beab6f-a02c-4808-9525-1f031d13e85d_wxs_gdc_realn.bam 32493296590 BAM harmonized CPTAC3 aeff0d2c-a961-4604-a89b-00568dd205d5 8c535ab1fbb64a874d9fa5d0babb0c1c {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C2415597.miRNA-Seq.R.hg38 C2415597 GBM miRNA-Seq recurrent_tumor 7316UP-3301-1104810 cc7c9eed-29f3-4a25-864d-4cd6f8071e96_mirnaseq_gdc_realn.bam 299239405 BAM harmonized CPTAC3 52ea6f91-1b1c-4c5a-b03e-81daa41ef9c0 772343054668900601a8cd5249c5e0ae {"aliquot_tag": "ALQ_7a5a0673", "gdc_sample_type": "Recurrent Tumor"} -C2415597.miRNA-Seq.S16_L003_R1.R C2415597 GBM miRNA-Seq recurrent_tumor 7316UP-3301-1104810 210817_UNC31-K00269_0302_AHLCTHBBXY_GAGTGG_S16_L003_R1_001.unaln.bam 261418307 BAM S16_L003_R1 unaligned CPTAC3 7fc389da-b7fc-4765-8e7b-78427f94fb81 422729d1f363c41e592fc0d92b09c7e5 {"aliquot_tag": "ALQ_7a5a0673", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C2415597.miRNA-Seq.S45_L003_R1.T C2415597 GBM miRNA-Seq tumor 7316UP-3213-1104802 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGTCA_S45_L003_R1_001.unaln.bam 221800320 BAM S45_L003_R1 unaligned CPTAC3 8246c90e-8b94-45c1-b838-4e352e69693a 0a1226bc33395cd83cf79a7b62c24796 {"aliquot_tag": "ALQ_8df5ca66", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C2415597.miRNA-Seq.T.hg38 C2415597 GBM miRNA-Seq tumor 7316UP-3213-1104802 356c884a-2197-4da2-89eb-88f60c882772_mirnaseq_gdc_realn.bam 252996886 BAM harmonized CPTAC3 a5e2090f-65d3-4ba3-adff-47f4294e7c92 9b8bd399dcb13d3afdad40bb58350b76 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor"} -C2415597.RNA-Seq.chimeric.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.chimeric.gdc_realn.bam 51464968 BAM chimeric harmonized CPTAC3 259f1515-9d2f-40a8-ac50-3739e6673220 21881365e78583ef786aa00948af7f53 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor"} -C2415597.RNA-Seq.genomic.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.genomic.gdc_realn.bam 9463100178 BAM genomic harmonized CPTAC3 81dcb229-7581-4325-a20f-08e0b18337d8 2964a452cf11a7077bbd99c19bd352c6 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor"} -C2415597.RNA-Seq.S15_L004_R1.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R1_001.fastq.gz 4016813028 FASTQ S15_L004_R1 unaligned CPTAC3 65a4c75a-7f0b-440c-92db-a907010614d1 2ea4eaa426378eb26463e947e5b887eb {"aliquot_tag": "ALQ_8df5ca66", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C2415597.RNA-Seq.S15_L004_R2.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R2_001.fastq.gz 4342338020 FASTQ S15_L004_R2 unaligned CPTAC3 bb7aa747-60b6-4342-aaa4-f076f360b67d 846577caa92152b93354ad27ef5579b6 {"aliquot_tag": "ALQ_8df5ca66", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C2415597.RNA-Seq.transcriptome.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.transcriptome.gdc_realn.bam 15629869679 BAM transcriptome harmonized CPTAC3 300ed4b2-5404-485b-bc6d-343f79caa015 2bdfc7ed2d2664edecb9ae74a1f921b1 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor"} -C2415597.WGS.N C2415597 GBM WGS blood_normal 7316UP-3213-1105205 7316UP-3213-1105205.WholeGenome.RP-2158.bam 50217161109 BAM aligned CPTAC3 0624d075-1b65-4bab-b6f2-1c9e0a21b6b4 81e1fe5d38e97c7e4c065c12a2fe6c45 {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal"} -C2415597.WGS.N.hg38 C2415597 GBM WGS blood_normal 7316UP-3213-1105205 919d4703-3f74-4005-8527-b799c88af446_wgs_gdc_realn.bam 151891127132 BAM harmonized CPTAC3 81a1a51b-92a2-4934-b3c7-21d141f6e0c3 f432f85771335baa303dbae8b0665782 {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal"} -C2415597.WGS.R C2415597 GBM WGS recurrent_tumor 7316UP-3301-1105203 7316UP-3301-1105203.WholeGenome.RP-2158.bam 55818050597 BAM aligned CPTAC3 e18c60c3-d0db-4475-ae0d-4c9908273151 76953b913614937c1c73ce8772320fbc {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor"} -C2415597.WGS.R.hg38 C2415597 GBM WGS recurrent_tumor 7316UP-3301-1105203 a2b4abb1-839e-4763-aa82-c754f118b220_wgs_gdc_realn.bam 167438335099 BAM harmonized CPTAC3 6ca6bc61-c0ba-40ab-b75f-a5bb2602af39 3279499b425a35ba86b1f2ee34922f9f {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor"} -C2415597.WXS.N C2415597 GBM WXS blood_normal 7316UP-3213-1105205 7316UP-3213-1105205.WholeExome.RP-1303.bam 26839308775 BAM aligned CPTAC3 00118ebe-547b-43c0-b0ef-8fd023ad31cd 645c7a2b32506b9b20217d48cf506f36 {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal"} -C2415597.WXS.N.hg38 C2415597 GBM WXS blood_normal 7316UP-3213-1105205 919d4703-3f74-4005-8527-b799c88af446_wxs_gdc_realn.bam 36750876656 BAM harmonized CPTAC3 dce2d5b9-9319-4e33-8a41-b9ead0147389 293c62a82a1a6e3e665cc6d5500e38de {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal"} -C2415597.WXS.R C2415597 GBM WXS recurrent_tumor 7316UP-3301-1105203 7316UP-3301-1105203.WholeExome.RP-1303.bam 24495516950 BAM aligned CPTAC3 bf176280-c535-4b55-b936-21e7fedcb5de 92171bf6ca581390405d7ada7010b3e6 {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor"} -C2415597.WXS.R.hg38 C2415597 GBM WXS recurrent_tumor 7316UP-3301-1105203 a2b4abb1-839e-4763-aa82-c754f118b220_wxs_gdc_realn.bam 33287969940 BAM harmonized CPTAC3 40466bdf-bea3-4d9a-92de-729418cd7304 bb271aa6e6c20f2606d25f0eef82c8bf {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor"} -C2415597.WXS.T C2415597 GBM WXS tumor 7316UP-3213-1105267 7316UP-3213-1105267.WholeExome.RP-1303.bam 22767710482 BAM aligned CPTAC3 0abd93c6-12d9-44b5-8d34-77397cbce77f 2d1d773c3bfee1ef5b9471f8f0714c50 {"aliquot_tag": "ALQ_1eee7bdc", "gdc_sample_type": "Primary Tumor"} -C2415597.WXS.T.hg38 C2415597 GBM WXS tumor 7316UP-3213-1105267 bc166e0c-63e2-409c-a09f-7100fc4d0399_wxs_gdc_realn.bam 30930941832 BAM harmonized CPTAC3 d7016be0-b5fd-4b35-bfcb-b9f68116a669 727548c240b744043835255b03c65b9b {"aliquot_tag": "ALQ_1eee7bdc", "gdc_sample_type": "Primary Tumor"} -C243048.DUP_94a7b89d.MethArray.Green.T C243048 GBM Methylation_Array tumor 7316UP-213 205555380040_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 52b82f22-4b5b-42a6-9fc3-77dd32a3f8f7 bb109d79b16ccdaccb28ac0e25dc0a28 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243048.DUP_94a7b89d.MethArray.Red.T C243048 GBM Methylation_Array tumor 7316UP-213 205555380040_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 685bb2b2-efbd-4687-b197-07900da31d53 9c96e31e74e37d97a3f3045190d6bce7 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243048.DUP_94a7b89d.WGS.T C243048 GBM WGS tumor 7316UP-213 7316UP-213.WholeGenome.RP-2158.bam 61469132170 BAM aligned CPTAC3 f60141d2-88a5-4976-9b89-ab2648c18585 321bfdce2e3950202d1dce683a9d22d5 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243048.DUP_94a7b89d.WGS.T.hg38 C243048 GBM WGS tumor 7316UP-213 e4e6f65e-c590-48d7-8fba-1bfc0f10d029_wgs_gdc_realn.bam 186367798316 BAM harmonized CPTAC3 fc5d3bd7-69e2-435f-b278-290e6237aa47 d796aafe8acba81e478c8ead8868d9f8 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243048.DUP_94a7b89d.WXS.T C243048 GBM WXS tumor 7316UP-213 7316UP-213.WholeExome.RP-1303.bam 23332361777 BAM aligned CPTAC3 952c667a-4096-42a6-892b-d0e81731560f d59403f95ea36fb092e55b68f82e9278 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243048.DUP_94a7b89d.WXS.T.hg38 C243048 GBM WXS tumor 7316UP-213 e4e6f65e-c590-48d7-8fba-1bfc0f10d029_wxs_gdc_realn.bam 31637926754 BAM harmonized CPTAC3 ba5c13e9-a560-4436-90f2-011d77ee7531 55f5ee36af09a09db0b8b44f2809c2e8 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243048.miRNA-Seq.R.hg38 C243048 GBM miRNA-Seq recurrent_tumor 7316UP-1282-1104796 d05db3d5-b6be-4234-a3d2-7082bf8fa3d1_mirnaseq_gdc_realn.bam 322382405 BAM harmonized CPTAC3 b2965833-263a-4522-8383-619c45de06de c3f9e5b4f3657c05e5d8061cea10507b {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor"} -C243048.miRNA-Seq.S13_L002_R1.R C243048 GBM miRNA-Seq recurrent_tumor 7316UP-1282-1104796 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L002_R1_001.unaln.bam 283713764 BAM S13_L002_R1 unaligned CPTAC3 03d33d85-051a-47ae-9c8b-b89b78fd4193 e1a8739e309877b12cafb4bcc0635e69 {"aliquot_tag": "ALQ_5753531d", "sample": "S13", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C243048.miRNA-Seq.S36_L002_R1.T C243048 GBM miRNA-Seq tumor 7316UP-213-1104783 210817_UNC31-K00269_0302_AHLCTHBBXY_TATAAT_S36_L002_R1_001.unaln.bam 247388747 BAM S36_L002_R1 unaligned CPTAC3 596d52ea-e0db-433d-a082-0ea1d6919f9b 9da4910950727769133ad013195fddd9 {"aliquot_tag": "ALQ_16e02be9", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C243048.miRNA-Seq.T.hg38 C243048 GBM miRNA-Seq tumor 7316UP-213-1104783 5a9c3046-135c-42ca-87c0-9e0456e85741_mirnaseq_gdc_realn.bam 276549197 BAM harmonized CPTAC3 d4df28d9-e66c-43a3-b2ae-a570abb38f71 3e54ecac5930fa3621dddc1de38368b4 {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor"} -C243048.RNA-Seq.chimeric.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.chimeric.gdc_realn.bam 118922839 BAM chimeric harmonized CPTAC3 ccea4c60-5922-42dc-975c-9ab3d4ae1b6e d0e2e69c4b7621f9ed5cf2c926c8da49 {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor"} -C243048.RNA-Seq.chimeric.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.chimeric.gdc_realn.bam 150848868 BAM chimeric harmonized CPTAC3 fcea2879-a76b-4382-bff1-6ee2e8f2a204 0aaef53ddd596db7d8f2eacfc809ff5e {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor"} -C243048.RNA-Seq.genomic.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.genomic.gdc_realn.bam 8787059735 BAM genomic harmonized CPTAC3 2d6b8c8a-4796-4ae3-a41a-8c406f5f01dd 2aa4ff0e257c08aa8d657c441a29697e {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor"} -C243048.RNA-Seq.genomic.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.genomic.gdc_realn.bam 9759936611 BAM genomic harmonized CPTAC3 822ba9f2-f945-486f-b42a-3e644ed48a6f 7a95e0fb48216a429726d96bf6752d02 {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor"} -C243048.RNA-Seq.S10_L003_R1.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R1_001.fastq.gz 3441784538 FASTQ S10_L003_R1 unaligned CPTAC3 363afde2-4960-4b58-9fb5-783487373231 93559bf7620c9800fea14ec277199af0 {"aliquot_tag": "ALQ_5753531d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C243048.RNA-Seq.S10_L003_R2.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R2_001.fastq.gz 3779949435 FASTQ S10_L003_R2 unaligned CPTAC3 94c8d23c-057f-4075-9b03-ebddc6c46e7c 3f85268ab56b70853e9635c77985f37c {"aliquot_tag": "ALQ_5753531d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C243048.RNA-Seq.S28_L007_R1.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R1_001.fastq.gz 4481092171 FASTQ S28_L007_R1 unaligned CPTAC3 098febb3-ede7-4533-b9f9-043c8d664e30 90390ef8dce83b1459486e2e9262deca {"aliquot_tag": "ALQ_16e02be9", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C243048.RNA-Seq.S28_L007_R2.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R2_001.fastq.gz 4627017636 FASTQ S28_L007_R2 unaligned CPTAC3 c7aab69b-f720-4820-9589-e1e033ef3ee3 2b427354fd9539ad44c24001b3e06ef1 {"aliquot_tag": "ALQ_16e02be9", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C243048.RNA-Seq.transcriptome.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.transcriptome.gdc_realn.bam 9875620470 BAM transcriptome harmonized CPTAC3 90a85fcb-025e-46eb-9afc-22cf1846d9a3 9fd822ea75aad294c3d89acc88f0ce2b {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor"} -C243048.RNA-Seq.transcriptome.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.transcriptome.gdc_realn.bam 16610767095 BAM transcriptome harmonized CPTAC3 53c57a7e-e839-47be-bf28-ab94eb0bcb4f cb28b5b4f516a8414de224c1eccc16ef {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor"} -C243048.WGS.N C243048 GBM WGS blood_normal 7316UP-1282-1105206 7316UP-1282-1105206.WholeGenome.RP-2158.bam 45626778138 BAM aligned CPTAC3 27ab3f0c-0f11-47a1-a9db-7d4672351791 22e72368489fa70abf16f8c73b729136 {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal"} -C243048.WGS.N.hg38 C243048 GBM WGS blood_normal 7316UP-1282-1105206 09888360-288f-45c9-9786-c44e6b9d9b58_wgs_gdc_realn.bam 138983449186 BAM harmonized CPTAC3 f5977d12-989d-4216-a674-474170a62e63 ca24f9765b5b07acf1d5554a81a4eb31 {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal"} -C243048.WGS.R C243048 GBM WGS recurrent_tumor 7316UP-1282-1105261 7316UP-1282-1105261.WholeGenome.RP-2158.bam 42877964474 BAM aligned CPTAC3 72db3c9f-efad-4791-b6d5-eec918651a42 28c94287dfe51f64cb70f4b7cccccd6a {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor"} -C243048.WGS.R.hg38 C243048 GBM WGS recurrent_tumor 7316UP-1282-1105261 7a0bdee2-9e09-4c49-b4bb-34e1b8ca7d0c_wgs_gdc_realn.bam 123519800289 BAM harmonized CPTAC3 d38bdf35-5960-4c0c-963e-00dd73d155ef 6bb3fe974f58278c9b24b2dbfa6194e0 {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor"} -C243048.WGS.T C243048 GBM WGS tumor 7316UP-213-1105246 7316UP-213-1105246.WholeGenome.RP-2158.bam 52268981914 BAM aligned CPTAC3 142d30eb-d2e2-4c33-8414-f2e9c84866ed 0d322df9cea5e94661c1167f487c7ecb {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor"} -C243048.WGS.T.hg38 C243048 GBM WGS tumor 7316UP-213-1105246 6c5fd8de-99ba-4d63-8dd6-7587d7e72478_wgs_gdc_realn.bam 151231520143 BAM harmonized CPTAC3 e7f1591c-6ecb-4af1-a23d-5a38754f57b9 18e114022f5d853343634563f5008c82 {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor"} -C243048.WXS.N C243048 GBM WXS blood_normal 7316UP-1282-1105206 7316UP-1282-1105206.WholeExome.RP-1303.bam 20741894205 BAM aligned CPTAC3 115a4ff0-cdd2-416e-95a5-1d5cf3fc1fb8 eca3dbe940600a2c789d0e3be9e93d3d {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal"} -C243048.WXS.N.hg38 C243048 GBM WXS blood_normal 7316UP-1282-1105206 09888360-288f-45c9-9786-c44e6b9d9b58_wxs_gdc_realn.bam 28402330953 BAM harmonized CPTAC3 8a82aa6f-8b08-4afa-8518-9a26dd06c832 2452f459bd2df60492cbba0c8d19887c {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal"} -C243048.WXS.R C243048 GBM WXS recurrent_tumor 7316UP-1282-1105261 7316UP-1282-1105261.WholeExome.RP-1303.bam 25962713150 BAM aligned CPTAC3 cbd7c1e2-4e4a-42d8-9344-eb10d2c05922 4f05bbdb3b13dd01e751614a274e12ae {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor"} -C243048.WXS.R.hg38 C243048 GBM WXS recurrent_tumor 7316UP-1282-1105261 7a0bdee2-9e09-4c49-b4bb-34e1b8ca7d0c_wxs_gdc_realn.bam 35071713175 BAM harmonized CPTAC3 52e8d865-92af-463f-8d7e-5c5580d8b31f 0e7c44d3c37b05aead22814ddbb5fa68 {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor"} -C243048.WXS.T C243048 GBM WXS tumor 7316UP-213-1105246 7316UP-213-1105246.WholeExome.RP-1303.bam 29270789494 BAM aligned CPTAC3 13cd0048-3145-4c19-be89-24bde2ca1da6 3d5ce2dab2f7a3db785e00a38c6a7b62 {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor"} -C243048.WXS.T.hg38 C243048 GBM WXS tumor 7316UP-213-1105246 6c5fd8de-99ba-4d63-8dd6-7587d7e72478_wxs_gdc_realn.bam 39637473887 BAM harmonized CPTAC3 8bdfe531-ae92-49f4-87c0-02ee2ad09779 43befd5e6a5d038398510680d7bd10b5 {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor"} -C243909.DUP_74725183.MethArray.Green.T C243909 GBM Methylation_Array tumor 7316UP-219 205705520032_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6e3cf174-072b-459b-9eda-bff7d753af77 86b3ef18a85c1b9017470f67d5b9ac87 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243909.DUP_74725183.MethArray.Red.T C243909 GBM Methylation_Array tumor 7316UP-219 205705520032_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 0fbba5f6-90e0-47b5-96af-27f89ed93727 10000caf15718550a3869d169e189168 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243909.DUP_74725183.WGS.T C243909 GBM WGS tumor 7316UP-219 7316UP-219.WholeGenome.RP-2158.bam 52714327427 BAM aligned CPTAC3 c5ffcd00-ea30-4616-8b67-a26c7fea6802 e28ddb74754aaa304a972daebc9b6f05 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243909.DUP_74725183.WGS.T.hg38 C243909 GBM WGS tumor 7316UP-219 d013c55d-d3bd-488f-95cd-6c6e9228d817_wgs_gdc_realn.bam 154834136196 BAM harmonized CPTAC3 17a9a485-58c1-4724-a7ca-62cdbceabac0 520bd3d14a159061e99e55308130745c {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243909.DUP_74725183.WXS.T C243909 GBM WXS tumor 7316UP-219 7316UP-219.WholeExome.RP-1303.bam 27485029046 BAM aligned CPTAC3 65aea2ff-8477-463c-91eb-14b62c217e27 1f55e2e7a4d0da953e44275b63f1d071 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243909.DUP_74725183.WXS.T.hg38 C243909 GBM WXS tumor 7316UP-219 d013c55d-d3bd-488f-95cd-6c6e9228d817_wxs_gdc_realn.bam 37111751144 BAM harmonized CPTAC3 fff94d78-afc1-4c90-9e46-7d90e2f05b5f 0b4982a9759a847be66a9571c3a911af {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C243909.DUP_a88bda53.MethArray.Green.R C243909 GBM Methylation_Array recurrent_tumor 7316UP-485 205854150029_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 34c8c910-6b6c-4c28-99b9-b40ec9783c89 28ebf2522af1a8d5d69904acda1cc70d {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C243909.DUP_a88bda53.MethArray.Red.R C243909 GBM Methylation_Array recurrent_tumor 7316UP-485 205854150029_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 53f3efef-5605-48f6-9ec1-e5bccfb0c938 a9cd7bc80b05ac7c912d1105f4112a97 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C243909.DUP_a88bda53.WGS.R C243909 GBM WGS recurrent_tumor 7316UP-485 7316UP-485.WholeGenome.RP-2158.bam 56426148983 BAM aligned CPTAC3 e62472d9-0680-4d19-be0f-59087d3ae5d8 77ee92da66a3ddd288a209ebfbc82a85 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C243909.DUP_a88bda53.WGS.R.hg38 C243909 GBM WGS recurrent_tumor 7316UP-485 1dec43db-5c7f-401c-a558-bb9ba1bbec31_wgs_gdc_realn.bam 169112842557 BAM harmonized CPTAC3 50e449fa-badd-4c24-9f55-27d5ee51f76d bf739d1963fddfbb8fa5c3ff980a3fc2 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C243909.DUP_a88bda53.WXS.R C243909 GBM WXS recurrent_tumor 7316UP-485 7316UP-485.WholeExome.RP-1303.bam 14857742498 BAM aligned CPTAC3 1df0c862-5d9b-4eef-948d-684bd79c2ffb eb3b8d7d6c31c06329fbca0add2a2928 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C243909.DUP_a88bda53.WXS.R.hg38 C243909 GBM WXS recurrent_tumor 7316UP-485 1dec43db-5c7f-401c-a558-bb9ba1bbec31_wxs_gdc_realn.bam 20832210812 BAM harmonized CPTAC3 deabc5a0-a029-492c-ad8a-ee4a70087d40 efefa8ca6213f004af7e64ae8d832345 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C243909.miRNA-Seq.R.hg38 C243909 GBM miRNA-Seq recurrent_tumor 7316UP-485-1104772 9c13cdcc-aaa0-4d11-92a0-c625ed228c94_mirnaseq_gdc_realn.bam 341848089 BAM harmonized CPTAC3 cc79e105-6d2b-45a1-8089-e59ed173e222 079add719e971dff6333e5332f064d80 {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor"} -C243909.miRNA-Seq.S14_L001_R1.T C243909 GBM miRNA-Seq tumor 7316UP-219-1104778 210817_UNC31-K00269_0302_AHLCTHBBXY_CTATAC_S14_L001_R1_001.unaln.bam 178291052 BAM S14_L001_R1 unaligned CPTAC3 1f9bdb50-0ce4-4b83-8374-4ba3e3283372 c65997746e5f7504bab4be6708c94591 {"aliquot_tag": "ALQ_93846430", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C243909.miRNA-Seq.S8_L001_R1.R C243909 GBM miRNA-Seq recurrent_tumor 7316UP-485-1104772 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L001_R1_001.unaln.bam 299105296 BAM S8_L001_R1 unaligned CPTAC3 fd7b50a5-0baa-47c1-806e-57a047867d69 d35f4485d829746c2cf806489f48a013 {"aliquot_tag": "ALQ_81c59fb3", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C243909.miRNA-Seq.T.hg38 C243909 GBM miRNA-Seq tumor 7316UP-219-1104778 d01c8619-4be8-4420-ada0-60392a580e7f_mirnaseq_gdc_realn.bam 192115100 BAM harmonized CPTAC3 1d12e2ba-27ce-4f32-995c-67b4d1410c50 1ae9b4f88f8fc6b7e903b0454c8cec91 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor"} -C243909.RNA-Seq.chimeric.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.chimeric.gdc_realn.bam 25850563 BAM chimeric harmonized CPTAC3 c577721e-485b-4e20-9d07-919ac8871392 6cacec3c4c69963a6152edd6c6c53d92 {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor"} -C243909.RNA-Seq.chimeric.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.chimeric.gdc_realn.bam 85465820 BAM chimeric harmonized CPTAC3 47567744-d950-4cb5-9047-5f4c20a11578 3a7c9b0d25232c0cfe7d4c542a2f4e08 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor"} -C243909.RNA-Seq.genomic.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.genomic.gdc_realn.bam 9096132246 BAM genomic harmonized CPTAC3 2561c9e4-45b1-4167-90ff-893804ca1fc4 562ce5ad3b1553f607872b82e4c40cd3 {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor"} -C243909.RNA-Seq.genomic.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.genomic.gdc_realn.bam 8596757364 BAM genomic harmonized CPTAC3 a973f0e9-1f4b-480d-8417-4a6d90b8ebd3 462ca65a1cb3796f571508c8b87e3406 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor"} -C243909.RNA-Seq.S24_L006_R1.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R1_001.fastq.gz 3996224097 FASTQ S24_L006_R1 unaligned CPTAC3 8bfdab73-70f3-4d2b-8e02-8080bd13b2e9 895870b0856ed5f1a61597cf0351caec {"aliquot_tag": "ALQ_93846430", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C243909.RNA-Seq.S24_L006_R2.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R2_001.fastq.gz 4320994288 FASTQ S24_L006_R2 unaligned CPTAC3 88b1f7e9-068a-472e-bfd3-7b557881e6f9 afa333c33141fb786ee55df2d19d2ab7 {"aliquot_tag": "ALQ_93846430", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C243909.RNA-Seq.S27_L007_R1.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R1_001.fastq.gz 3937677388 FASTQ S27_L007_R1 unaligned CPTAC3 b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d a97f8bdf42ac59123583f8489d8390be {"aliquot_tag": "ALQ_81c59fb3", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C243909.RNA-Seq.S27_L007_R2.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R2_001.fastq.gz 4036597415 FASTQ S27_L007_R2 unaligned CPTAC3 71ed75b3-d868-4335-b995-535c8d4f07c0 f1ef4a273848085f7986a3ee478a88c4 {"aliquot_tag": "ALQ_81c59fb3", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C243909.RNA-Seq.transcriptome.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.transcriptome.gdc_realn.bam 16642488599 BAM transcriptome harmonized CPTAC3 b6fdc7c6-91e2-4ad7-bc08-03b6e3cead5e 1f1d7db0c196ef043ca1199ba88fdc5a {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor"} -C243909.RNA-Seq.transcriptome.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.transcriptome.gdc_realn.bam 16797632365 BAM transcriptome harmonized CPTAC3 baac4c10-b397-46eb-a867-83372eee2d55 d4940a1a62c747d142b1e8ae0ed9c208 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor"} -C243909.WGS.T C243909 GBM WGS tumor 7316UP-219-1105241 7316UP-219-1105241.WholeGenome.RP-2158.bam 56915003249 BAM aligned CPTAC3 54da4592-2a1c-4696-87e4-a0b8f2b0eaed 1f6438cd41793624a477b9365b64e503 {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor"} -C243909.WGS.T.hg38 C243909 GBM WGS tumor 7316UP-219-1105241 87b93eca-6649-48fe-8311-56853e65a862_wgs_gdc_realn.bam 169274155921 BAM harmonized CPTAC3 71a00fb2-0e73-4980-88e1-ef84aaa36967 7928cb710bf51a4f89d4e849a94f0bea {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor"} -C243909.WXS.N C243909 GBM WXS blood_normal 7316UP-219-1105279 7316UP-219-1105279.WholeExome.RP-1303.bam 28502225983 BAM aligned CPTAC3 d290276a-8306-4336-921a-16e61bdc4ead edcb9ca772b5efa4d7e7aa98e9bdcecc {"aliquot_tag": "ALQ_5af4f128", "gdc_sample_type": "Blood Derived Normal"} -C243909.WXS.N.hg38 C243909 GBM WXS blood_normal 7316UP-219-1105279 20ba330f-7c79-4384-b682-3ba33e885f88_wxs_gdc_realn.bam 38598238526 BAM harmonized CPTAC3 3dd2f03b-0318-4a8e-b8b6-531f33492686 91ad87884e692a1fa85f4d1c93380edc {"aliquot_tag": "ALQ_5af4f128", "gdc_sample_type": "Blood Derived Normal"} -C243909.WXS.R C243909 GBM WXS recurrent_tumor 7316UP-485-1105235 7316UP-485-1105235.WholeExome.RP-1303.bam 23297906342 BAM aligned CPTAC3 abe1406a-385e-4b82-bbe8-aac969c91966 0c2c2a852f2fab6e971960bc9f11754e {"aliquot_tag": "ALQ_c5ba6a9a", "gdc_sample_type": "Recurrent Tumor"} -C243909.WXS.R.hg38 C243909 GBM WXS recurrent_tumor 7316UP-485-1105235 5f67efbe-9bae-4857-9fd4-bb841ba534b4_wxs_gdc_realn.bam 31929269201 BAM harmonized CPTAC3 0d7be0a5-6d05-4f07-aad8-e54e2cf4d39e 12f99601414ba1401ff7177df87c3395 {"aliquot_tag": "ALQ_c5ba6a9a", "gdc_sample_type": "Recurrent Tumor"} -C243909.WXS.T C243909 GBM WXS tumor 7316UP-219-1105241 7316UP-219-1105241.WholeExome.RP-1303.bam 22953350618 BAM aligned CPTAC3 96c59667-865e-40c1-8dd9-cd08e128daeb 1f248af4f100a25c1ade22e8163687fc {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor"} -C243909.WXS.T.hg38 C243909 GBM WXS tumor 7316UP-219-1105241 87b93eca-6649-48fe-8311-56853e65a862_wxs_gdc_realn.bam 31562155891 BAM harmonized CPTAC3 c7bd5850-d12c-44e5-ab30-20b39a264488 ebe20581b4419d4c68f836313e136391 {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor"} -C247230.DUP_aa190bd.MethArray.Green.T C247230 GBM Methylation_Array tumor 7316UP-8 205854150029_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 597a93d3-033b-4efc-b7c7-7b7628f9d4c7 c936ea2788968a5d6e68c2f32854e1fb {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C247230.DUP_aa190bd.MethArray.Red.T C247230 GBM Methylation_Array tumor 7316UP-8 205854150029_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 223ccfec-3713-4643-9c25-d02ff6f18c30 90fe9700ed81d0ee0361f4287b865bea {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C247230.DUP_aa190bd.WGS.T C247230 GBM WGS tumor 7316UP-8 7316UP-8.WholeGenome.RP-2158.bam 53905269524 BAM aligned CPTAC3 65b28340-14d4-4169-a018-5edd58793a32 9aa1a40a87adf1df7f02a06060b6ddfe {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C247230.DUP_aa190bd.WGS.T.hg38 C247230 GBM WGS tumor 7316UP-8 44d33820-4b25-4059-b10b-6f7b9038ed39_wgs_gdc_realn.bam 159958839057 BAM harmonized CPTAC3 a32f7c17-1eca-4dcd-92e8-f5b8068d72e7 c191e5bbb6a84be5bec8aaa8f04f1417 {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C247230.DUP_aa190bd.WXS.T C247230 GBM WXS tumor 7316UP-8 7316UP-8.WholeExome.RP-1303.bam 27601184521 BAM aligned CPTAC3 ab95e72b-3a52-4b01-ab35-ac257492f4e9 201390b516a565baebba7e7d213fe036 {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C247230.DUP_aa190bd.WXS.T.hg38 C247230 GBM WXS tumor 7316UP-8 44d33820-4b25-4059-b10b-6f7b9038ed39_wxs_gdc_realn.bam 37400388874 BAM harmonized CPTAC3 f79420a5-f8b3-4853-85e4-8103a56fc3f9 e68ed6aa02a67e4ddfa67d28b6809670 {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C247230.DUP_e9d04cd8.MethArray.Green.R C247230 GBM Methylation_Array recurrent_tumor 7316UP-243 205705520056_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d7e68fbf-2764-46c9-80b6-ca329aa55bb8 7da17e3377f4bbf318eee4d289a72aea {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C247230.DUP_e9d04cd8.MethArray.Red.R C247230 GBM Methylation_Array recurrent_tumor 7316UP-243 205705520056_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 42ef7b01-295b-480b-8609-5318ea68939a 4218880e132a549e17caabd5b827537b {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C247230.DUP_e9d04cd8.WGS.R C247230 GBM WGS recurrent_tumor 7316UP-243 7316UP-243.WholeGenome.RP-2158.bam 47459738308 BAM aligned CPTAC3 8058370c-7e94-45d2-9131-6ff34cce28ed 897785648732aeff71efb9fc43d61849 {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C247230.DUP_e9d04cd8.WGS.R.hg38 C247230 GBM WGS recurrent_tumor 7316UP-243 a16f7d3f-200b-49db-9909-c361c50a90c8_wgs_gdc_realn.bam 142694777571 BAM harmonized CPTAC3 6e46a682-eb97-4ac2-8d28-4726cae9a0b6 69fb984b60940e3dc29927d1ea3c5ad6 {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C247230.DUP_e9d04cd8.WXS.R C247230 GBM WXS recurrent_tumor 7316UP-243 7316UP-243.WholeExome.RP-1303.bam 22789049179 BAM aligned CPTAC3 9ce277ba-4d70-49f1-9a79-517b1a0abde6 221dd5ca5dce51353687da7f99ec893d {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C247230.DUP_e9d04cd8.WXS.R.hg38 C247230 GBM WXS recurrent_tumor 7316UP-243 a16f7d3f-200b-49db-9909-c361c50a90c8_wxs_gdc_realn.bam 31063908626 BAM harmonized CPTAC3 1e18a44f-e868-400d-bc06-212bb7f6d66a 6d0c6df460bbd54230cf217c8a87feda {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C247230.miRNA-Seq.R.hg38 C247230 GBM miRNA-Seq recurrent_tumor 7316UP-243-1104766 41832d73-f951-447d-964c-51645d636268_mirnaseq_gdc_realn.bam 503338290 BAM harmonized CPTAC3 b875033d-eb38-4314-a95a-0e22cb57b14a 9653a8ae06d0cee9f20f27cc9315fdf4 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor"} -C247230.miRNA-Seq.S29_L002_R1.T C247230 GBM miRNA-Seq tumor 7316UP-8-1104780 210817_UNC31-K00269_0302_AHLCTHBBXY_GACGAC_S29_L002_R1_001.unaln.bam 213631329 BAM S29_L002_R1 unaligned CPTAC3 9d7396dc-8425-4efc-b911-f5ec4c08beae 4bef82499534e2579dbf913c3e5cce2c {"aliquot_tag": "ALQ_32a21592", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C247230.miRNA-Seq.S2_L001_R1.R C247230 GBM miRNA-Seq recurrent_tumor 7316UP-243-1104766 210817_UNC31-K00269_0302_AHLCTHBBXY_ATTCCT_S2_L001_R1_001.unaln.bam 448212917 BAM S2_L001_R1 unaligned CPTAC3 aceea17e-293a-4fc7-8147-5579c2bde608 3bfd1d0aa3e1677901645211a608928f {"aliquot_tag": "ALQ_1e2039ac", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C247230.miRNA-Seq.T.hg38 C247230 GBM miRNA-Seq tumor 7316UP-8-1104780 12e7bd82-0f76-49f3-ad81-19fde19d043f_mirnaseq_gdc_realn.bam 243425608 BAM harmonized CPTAC3 fcbacfb3-fd33-4485-a01f-5b58d2facb90 2d47dd93db6475358e362352c79b156f {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor"} -C247230.RNA-Seq.chimeric.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.chimeric.gdc_realn.bam 40127402 BAM chimeric harmonized CPTAC3 a15555ad-244b-4796-bdea-b9a8da90d4ff 5034e933823c50808cfc44d1df8f0521 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor"} -C247230.RNA-Seq.chimeric.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.chimeric.gdc_realn.bam 111055787 BAM chimeric harmonized CPTAC3 f5f3341f-37fe-473d-9481-0d59ae5ecff1 6ebd155a4239a6436978c16b68491ab8 {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor"} -C247230.RNA-Seq.genomic.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.genomic.gdc_realn.bam 8685326882 BAM genomic harmonized CPTAC3 2e81b543-8da5-402d-bcc7-15ad86bcbf80 4abe0a2acb85bd15c8c651f033ae30b0 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor"} -C247230.RNA-Seq.genomic.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.genomic.gdc_realn.bam 8834657872 BAM genomic harmonized CPTAC3 5479baec-5c9c-4c5d-b85c-23e24ddef741 fcdd729b6fbd50290e53309438f83ee6 {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor"} -C247230.RNA-Seq.S22_L006_R1.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R1_001.fastq.gz 3837839898 FASTQ S22_L006_R1 unaligned CPTAC3 4c52701e-f9d9-4fbf-9530-2d8e420b5078 6225a9ed63e76e993d364df634351f64 {"aliquot_tag": "ALQ_32a21592", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C247230.RNA-Seq.S22_L006_R2.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R2_001.fastq.gz 4058273725 FASTQ S22_L006_R2 unaligned CPTAC3 bd9ebef7-47a0-4365-a921-12a36feb035b a5e0407cc240f2db02daaf9a2406be4c {"aliquot_tag": "ALQ_32a21592", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C247230.RNA-Seq.S7_L002_R1.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R1_001.fastq.gz 3300405304 FASTQ S7_L002_R1 unaligned CPTAC3 982111f4-0501-4138-a072-3243d58dd670 3afa847dc8c859a8e4c76d6df90be1a3 {"aliquot_tag": "ALQ_1e2039ac", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C247230.RNA-Seq.S7_L002_R2.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R2_001.fastq.gz 3601477757 FASTQ S7_L002_R2 unaligned CPTAC3 25e17967-5374-45f3-a76c-1d236667a8b2 19ae8c3aa7e21f1b44a8e9dc35127b0f {"aliquot_tag": "ALQ_1e2039ac", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C247230.RNA-Seq.transcriptome.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.transcriptome.gdc_realn.bam 12827689325 BAM transcriptome harmonized CPTAC3 fce0ad04-a793-4b5b-8ea8-a89ff03a7b56 7a98ec94084b660cbfb39c5b55859322 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor"} -C247230.RNA-Seq.transcriptome.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.transcriptome.gdc_realn.bam 14686014418 BAM transcriptome harmonized CPTAC3 ff2b3c82-7af6-469c-8d20-c866442b349c b63a76606e44298d41defe537def782f {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor"} -C247230.WGS.N C247230 GBM WGS blood_normal 7316UP-243-1105280 7316UP-243-1105280.WholeGenome.RP-2158.bam 57314256084 BAM aligned CPTAC3 58a2b1ac-1bcf-4c3f-a404-678d5503f37a 621d9c9991da3c7be4cef6abbb190723 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal"} -C247230.WGS.N.hg38 C247230 GBM WGS blood_normal 7316UP-243-1105280 bafee300-6a7f-4e2a-b45d-0ae8e53655db_wgs_gdc_realn.bam 166548205017 BAM harmonized CPTAC3 af1de814-a89b-4044-9f65-925fe40aaf42 cf49c9f6f8635eaf50a6f9439182a354 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal"} -C247230.WXS.N C247230 GBM WXS blood_normal 7316UP-243-1105280 7316UP-243-1105280.WholeExome.RP-1303.bam 25993398731 BAM aligned CPTAC3 9b772baf-d183-401e-a925-bf90c0717c52 677cad82b6859274a120195b86169063 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal"} -C247230.WXS.N.hg38 C247230 GBM WXS blood_normal 7316UP-243-1105280 bafee300-6a7f-4e2a-b45d-0ae8e53655db_wxs_gdc_realn.bam 35512038256 BAM harmonized CPTAC3 086861a1-1e33-4c25-b509-38a0c0f4b1e6 c0cb3531811f0cdca9c143a6a2cdda29 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal"} -C247230.WXS.R C247230 GBM WXS recurrent_tumor 7316UP-243-1105229 7316UP-243-1105229.WholeExome.RP-1303.bam 22180737177 BAM aligned CPTAC3 b8807cca-8f0f-4399-861a-7a14e01a97f2 9a67b576423d633aab96f2e0cf9f723e {"aliquot_tag": "ALQ_548444b7", "gdc_sample_type": "Recurrent Tumor"} -C247230.WXS.R.hg38 C247230 GBM WXS recurrent_tumor 7316UP-243-1105229 98f71749-a68e-4bd9-930f-224f65a1bf8e_wxs_gdc_realn.bam 30087935083 BAM harmonized CPTAC3 92fc25a5-3390-42f3-93e8-117df6356e29 4225fa937d0669355ef887fed6fe109b {"aliquot_tag": "ALQ_548444b7", "gdc_sample_type": "Recurrent Tumor"} -C247230.WXS.T C247230 GBM WXS tumor 7316UP-8-1105243 7316UP-8-1105243.WholeExome.RP-1303.bam 27341900884 BAM aligned CPTAC3 dcba1f63-8aa5-4a23-8eae-e1c3b13a7335 8df0bbe77f7474d674effcd334ba7018 {"aliquot_tag": "ALQ_b969aeaa", "gdc_sample_type": "Primary Tumor"} -C247230.WXS.T.hg38 C247230 GBM WXS tumor 7316UP-8-1105243 eafce93e-0fd9-44bb-942d-7820b6f68744_wxs_gdc_realn.bam 37210403279 BAM harmonized CPTAC3 94b2e77b-dacb-475b-bbef-febab3c064c2 c59b6e07e6379b603c8034be6df2aaab {"aliquot_tag": "ALQ_b969aeaa", "gdc_sample_type": "Primary Tumor"} -C259161.DUP_5c7e3295.MethArray.Green.T C259161 GBM Methylation_Array tumor 7316UP-293 205828590001_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 7620dc30-1581-4eb7-9cca-395334fb9aef f3ee23f2699b880db0cd9d5a408cef92 {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C259161.DUP_5c7e3295.MethArray.Red.T C259161 GBM Methylation_Array tumor 7316UP-293 205828590001_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 d0e798e0-177c-4322-91bc-89928658380f f39c188f4affb12fec70c49ccfb99bec {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C259161.DUP_5c7e3295.WGS.T C259161 GBM WGS tumor 7316UP-293 7316UP-293.WholeGenome.RP-2158.bam 51492350207 BAM aligned CPTAC3 b9dd5682-e558-42df-b76f-56dffe1d3e63 add9f5ad40c48a6ba4fe48fa34ea842a {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C259161.DUP_5c7e3295.WGS.T.hg38 C259161 GBM WGS tumor 7316UP-293 71aff02e-d6dd-4292-8627-d33c7d95fea5_wgs_gdc_realn.bam 147762673467 BAM harmonized CPTAC3 88db0eef-aadc-4e7b-b6e9-20df18940bf3 806cf54a700a596a2fecbd4300aabc1b {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C259161.DUP_5c7e3295.WXS.T C259161 GBM WXS tumor 7316UP-293 7316UP-293.WholeExome.RP-1303.bam 21468924973 BAM aligned CPTAC3 c06021b5-0843-46e8-a2f7-9bbdd7275f57 9afe38d231ab4feb975539d480fe835a {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C259161.DUP_5c7e3295.WXS.T.hg38 C259161 GBM WXS tumor 7316UP-293 71aff02e-d6dd-4292-8627-d33c7d95fea5_wxs_gdc_realn.bam 29087943502 BAM harmonized CPTAC3 942805cd-2142-4c93-b3d2-a8980b14e829 710cabcd82da98962a19b73a0c963dd3 {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C259161.miRNA-Seq.R.hg38 C259161 GBM miRNA-Seq recurrent_tumor 7316UP-349-1104793 28655cf0-3804-4657-abec-5cd024c18dc8_mirnaseq_gdc_realn.bam 539482740 BAM harmonized CPTAC3 99ce1cb7-e4c5-4231-b9a1-75933d5f6bb6 43fa79eff936e35a08298c3cab36f268 {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor"} -C259161.miRNA-Seq.S31_L002_R1.R C259161 GBM miRNA-Seq recurrent_tumor 7316UP-349-1104793 210817_UNC31-K00269_0302_AHLCTHBBXY_GCCAAT_S31_L002_R1_001.unaln.bam 464236046 BAM S31_L002_R1 unaligned CPTAC3 e4bdd6d6-4248-414d-8170-525e360aa9c1 041723ba253799cd799629f1abd061e0 {"aliquot_tag": "ALQ_bd7284b2", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C259161.miRNA-Seq.S40_L002_R1.T C259161 GBM miRNA-Seq tumor 7316UP-293-1104787 210817_UNC31-K00269_0302_AHLCTHBBXY_TCGGCA_S40_L002_R1_001.unaln.bam 330508572 BAM S40_L002_R1 unaligned CPTAC3 5f0cd3b6-67e2-460b-b629-26c99919328b 285da821920368a666e7806cc43c1235 {"aliquot_tag": "ALQ_25aaf04", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C259161.miRNA-Seq.T.hg38 C259161 GBM miRNA-Seq tumor 7316UP-293-1104787 7091f748-633c-46ec-8ac6-19145dd1d5c0_mirnaseq_gdc_realn.bam 374385566 BAM harmonized CPTAC3 08dda8da-4c64-4913-8687-59e6961d514a 25c47af7f29f3d9fa0682a0ecdc3cc8d {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor"} -C259161.RNA-Seq.chimeric.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.chimeric.gdc_realn.bam 53445744 BAM chimeric harmonized CPTAC3 13904bc4-8e3d-42a1-ae74-c1effec4b272 9927918acc4ba48190c619b86e1667eb {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor"} -C259161.RNA-Seq.chimeric.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.chimeric.gdc_realn.bam 102727780 BAM chimeric harmonized CPTAC3 f7a4c4a5-df6a-4d3c-b004-bc1a579a37fc 4a0c322388b96d98563903bfeead603c {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor"} -C259161.RNA-Seq.genomic.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.genomic.gdc_realn.bam 9556689537 BAM genomic harmonized CPTAC3 e0abe08b-c62c-4134-aa63-cfb21cfde381 54b04b340af667b159fde66107177188 {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor"} -C259161.RNA-Seq.genomic.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.genomic.gdc_realn.bam 9477389368 BAM genomic harmonized CPTAC3 0185bf58-ee9b-44d5-89d1-a40b4cebf3a4 bf8ec446be511d11226c3b8b8b13cd79 {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor"} -C259161.RNA-Seq.S16_L004_R1.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R1_001.fastq.gz 3933839190 FASTQ S16_L004_R1 unaligned CPTAC3 04492d6a-768d-408d-8491-a3421e3d7fb1 2b1841386be1aaf0864d2ba5d322e649 {"aliquot_tag": "ALQ_bd7284b2", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C259161.RNA-Seq.S16_L004_R2.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R2_001.fastq.gz 4236168874 FASTQ S16_L004_R2 unaligned CPTAC3 66fc2918-baf1-4cce-951f-423eec4d3e30 12a10f749c89a2806297926dc66a83b3 {"aliquot_tag": "ALQ_bd7284b2", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C259161.RNA-Seq.S21_L006_R1.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R1_001.fastq.gz 4076185110 FASTQ S21_L006_R1 unaligned CPTAC3 99e448a9-f393-41a2-9c6a-46ed6a453a25 b0b53e1ae2abad3ee3d440aa67dff5a0 {"aliquot_tag": "ALQ_25aaf04", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C259161.RNA-Seq.S21_L006_R2.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R2_001.fastq.gz 4363507516 FASTQ S21_L006_R2 unaligned CPTAC3 ef415675-ebd8-43c7-94ea-63da5ebf9db3 1dd021d1a775ec867da4cbf019b515c3 {"aliquot_tag": "ALQ_25aaf04", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C259161.RNA-Seq.transcriptome.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.transcriptome.gdc_realn.bam 15103656042 BAM transcriptome harmonized CPTAC3 e852e168-d979-445a-be59-d32afa63ebd4 c6f2848df594dd6262f54142fa0d894d {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor"} -C259161.RNA-Seq.transcriptome.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.transcriptome.gdc_realn.bam 16376632344 BAM transcriptome harmonized CPTAC3 8dbf338d-1e5d-4937-bc86-33a7ede035b0 dfc9fe5cdbc2141fdbcb33640a0563c9 {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor"} -C259161.WGS.N C259161 GBM WGS blood_normal 7316UP-293-1105283 7316UP-293-1105283.WholeGenome.RP-2158.bam 57896176406 BAM aligned CPTAC3 3da278c9-b808-4a2e-af20-5ba92f403ab0 19be2d8cdb31387309514ec0d57cf365 {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal"} -C259161.WGS.N.hg38 C259161 GBM WGS blood_normal 7316UP-293-1105283 603ac742-ade4-40ab-8520-057a0e4f8ecb_wgs_gdc_realn.bam 170408183425 BAM harmonized CPTAC3 957eecd3-4344-4afa-9bf2-b2af7d954a5e 12867c9c06bffa66e40949a6e653c86c {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal"} -C259161.WGS.R C259161 GBM WGS recurrent_tumor 7316UP-349-1105257 7316UP-349-1105257.WholeGenome.RP-2158.bam 50639596227 BAM aligned CPTAC3 9acde03d-85af-45b6-850f-fa97cc0c7340 0ef07a74f7de9c04f55f9c3bfaa25648 {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor"} -C259161.WGS.R.hg38 C259161 GBM WGS recurrent_tumor 7316UP-349-1105257 9d818652-ee59-4e8b-84f0-d25532dd38cf_wgs_gdc_realn.bam 147986610083 BAM harmonized CPTAC3 0784f4d4-d647-403c-bf97-411858afc33f 16d7b51b39e2dbe2f17729db3f00f34d {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor"} -C259161.WGS.T C259161 GBM WGS tumor 7316UP-293-1105250 7316UP-293-1105250.WholeGenome.RP-2158.bam 57788463110 BAM aligned CPTAC3 74371bec-c399-456a-b912-e49ef8cf7290 893770295090e3ebf3c290994a74922f {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor"} -C259161.WGS.T.hg38 C259161 GBM WGS tumor 7316UP-293-1105250 c72c1846-16af-4899-a429-9f5b7c954a58_wgs_gdc_realn.bam 168293940872 BAM harmonized CPTAC3 389e91a8-3b5c-4d4a-9e58-7f45e2698503 36c7d16cf5ee62c0c4f45ff16c4e50b2 {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor"} -C259161.WXS.N C259161 GBM WXS blood_normal 7316UP-293-1105283 7316UP-293-1105283.WholeExome.RP-1303.bam 25717997268 BAM aligned CPTAC3 5fe5e6d3-0f58-49cf-b0f2-861cc836f83b 4eaed368a3d54ad6e801c0f1f467c88b {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal"} -C259161.WXS.N.hg38 C259161 GBM WXS blood_normal 7316UP-293-1105283 603ac742-ade4-40ab-8520-057a0e4f8ecb_wxs_gdc_realn.bam 34903240457 BAM harmonized CPTAC3 a5ab0154-a15f-43d2-971f-55ba37282546 eecea6a4090405c7cf77a06792fd8c75 {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal"} -C259161.WXS.R C259161 GBM WXS recurrent_tumor 7316UP-349-1105257 7316UP-349-1105257.WholeExome.RP-1303.bam 29700714795 BAM aligned CPTAC3 f12b0fa6-8ad9-4f0b-a9e6-e27e6e26bec5 ea4f85779c10bb585a5e94dec29a171a {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor"} -C259161.WXS.R.hg38 C259161 GBM WXS recurrent_tumor 7316UP-349-1105257 9d818652-ee59-4e8b-84f0-d25532dd38cf_wxs_gdc_realn.bam 40707347912 BAM harmonized CPTAC3 eb83d8e6-500f-4e99-82ac-fc4e079b3fb8 1b878d210610df8150929f6a221fdcae {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor"} -C259161.WXS.T C259161 GBM WXS tumor 7316UP-293-1105250 7316UP-293-1105250.WholeExome.RP-1303.bam 29802893632 BAM aligned CPTAC3 f16c354e-4c82-4248-a6d1-2d52ed2aaf13 626cd0ab2494875a3491416c19c1eb74 {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor"} -C259161.WXS.T.hg38 C259161 GBM WXS tumor 7316UP-293-1105250 c72c1846-16af-4899-a429-9f5b7c954a58_wxs_gdc_realn.bam 40738250391 BAM harmonized CPTAC3 2fe9a9b8-b5c4-4e72-8fb7-71cac06dd773 fa2861e171552221e417540fa05b640b {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor"} -C266664.DUP_5dbc58a2.MethArray.Green.T C266664 GBM Methylation_Array tumor 7316UP-393 205707890106_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a32c7219-318d-484b-8563-d9d3423acafc e353cda16efd4bf59828fecada5ed772 {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C266664.DUP_5dbc58a2.MethArray.Red.T C266664 GBM Methylation_Array tumor 7316UP-393 205707890106_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 54fe2299-ad7e-4f6e-8309-3a0cd4713a35 0757f5170e984f025a74818a4003dfe4 {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C266664.DUP_5dbc58a2.WGS.T C266664 GBM WGS tumor 7316UP-393 7316UP-393.WholeGenome.RP-2158.bam 61362965684 BAM aligned CPTAC3 455c35ce-ea41-4b99-bb0a-46816906b859 2209a014757265b8f731e786c2459948 {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C266664.DUP_5dbc58a2.WGS.T.hg38 C266664 GBM WGS tumor 7316UP-393 670c02b3-383c-4ca4-9a0d-2fc479296d0c_wgs_gdc_realn.bam 177904424104 BAM harmonized CPTAC3 e04b8d09-5776-4725-b3f5-db58cd62f8f6 abcafa3a38b34a21bf0865858d3c647e {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C266664.DUP_5dbc58a2.WXS.T C266664 GBM WXS tumor 7316UP-393 7316UP-393.WholeExome.RP-1303.bam 32889072571 BAM aligned CPTAC3 1b809ed9-7f11-4a12-9402-43c8f12c93c8 bd066a01085fa2594c1f047c7332b76f {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C266664.DUP_5dbc58a2.WXS.T.hg38 C266664 GBM WXS tumor 7316UP-393 670c02b3-383c-4ca4-9a0d-2fc479296d0c_wxs_gdc_realn.bam 45112910713 BAM harmonized CPTAC3 ad1b5b7b-5c70-44e1-aa5c-f1e397fbb55a 7193b6a00c7e7379ccdfd63d14b0958b {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C266664.DUP_f5846b1c.MethArray.Green.R C266664 GBM Methylation_Array recurrent_tumor 7316UP-553 205705520056_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a5c8ec4f-e9b9-4dab-9777-b85dea6cd258 d513d197146776d07e147cd631af2cf4 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C266664.DUP_f5846b1c.MethArray.Red.R C266664 GBM Methylation_Array recurrent_tumor 7316UP-553 205705520056_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 7fa9d505-f189-484a-90f6-3444297d0f05 867eb7e3c5a8d1321e1e8705fb50fd7c {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C266664.DUP_f5846b1c.WGS.R C266664 GBM WGS recurrent_tumor 7316UP-553 7316UP-553.WholeGenome.RP-2158.bam 54234643027 BAM aligned CPTAC3 2ac25df6-1097-47be-ba43-a53283235015 1affa8e36e43be345ed26e06ad276e51 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C266664.DUP_f5846b1c.WGS.R.hg38 C266664 GBM WGS recurrent_tumor 7316UP-553 76189e22-96ba-4eb1-8901-b9655aafb241_wgs_gdc_realn.bam 166973550960 BAM harmonized CPTAC3 3576132e-1814-4928-b431-292d202259ae d71b1f0b8a08561e2ef5826e16582575 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C266664.DUP_f5846b1c.WXS.R C266664 GBM WXS recurrent_tumor 7316UP-553 7316UP-553.WholeExome.RP-1303.bam 24922371326 BAM aligned CPTAC3 11bcff0f-cb87-409b-b58e-ff8859203502 78f9623b2248c4ea51ec63398690b1ca {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C266664.DUP_f5846b1c.WXS.R.hg38 C266664 GBM WXS recurrent_tumor 7316UP-553 76189e22-96ba-4eb1-8901-b9655aafb241_wxs_gdc_realn.bam 85867672951 BAM harmonized CPTAC3 c61e7ef0-1f5b-4b8a-8d31-0f7fd0b03141 afe556b9a173b78e4ffe03ebe49c9a84 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C266664.miRNA-Seq.R.hg38 C266664 GBM miRNA-Seq recurrent_tumor 7316UP-553-1104771 3d0007d9-d52a-4daa-ba33-f6d5aea63443_mirnaseq_gdc_realn.bam 156242375 BAM harmonized CPTAC3 d94ead59-6712-4b0e-9e4d-f8f9318c04b1 e210e7a7af0313702a2851c1f78b86fd {"aliquot_tag": "ALQ_5fa6e3f3", "gdc_sample_type": "Recurrent Tumor"} -C266664.miRNA-Seq.S17_L003_R1.T C266664 GBM miRNA-Seq tumor 7316UP-393-1104804 210817_UNC31-K00269_0302_AHLCTHBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 168626022 BAM S17_L003_R1 unaligned CPTAC3 a21dc826-feca-410d-9393-6ce5bb8ff9d6 cb4d3471b1842e3071474312b4f0a267 {"aliquot_tag": "ALQ_9958ec4b", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C266664.miRNA-Seq.S7_L001_R1.R C266664 GBM miRNA-Seq recurrent_tumor 7316UP-553-1104771 210817_UNC31-K00269_0302_AHLCTHBBXY_CACTCA_S7_L001_R1_001.unaln.bam 134303715 BAM S7_L001_R1 unaligned CPTAC3 846ccca6-b823-4daa-81b1-3aaaba6e38d8 ece599e1b740f80b0e55f163122143a5 {"aliquot_tag": "ALQ_5fa6e3f3", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C266664.miRNA-Seq.T.hg38 C266664 GBM miRNA-Seq tumor 7316UP-393-1104804 5151925a-52f2-4dbf-83ce-fff860e41e3d_mirnaseq_gdc_realn.bam 202471637 BAM harmonized CPTAC3 597ee29b-d771-4ad0-bcf9-19227dd4f906 d9d49260d93302fad8121e68a25c64d9 {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor"} -C266664.RNA-Seq.chimeric.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.chimeric.gdc_realn.bam 79986402 BAM chimeric harmonized CPTAC3 083418d6-1b20-437f-b366-197418ec4056 bb25f03ff841586b027f1fd86c748260 {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor"} -C266664.RNA-Seq.genomic.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.genomic.gdc_realn.bam 8262571082 BAM genomic harmonized CPTAC3 d58ecb4b-0513-41e1-9875-924f338eb487 4ecd120adb68fa070ab77e353d4a8ab3 {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor"} -C266664.RNA-Seq.S2_L001_R1.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R1_001.fastq.gz 3742428699 FASTQ S2_L001_R1 unaligned CPTAC3 d47ac642-9204-45da-a0b5-ea6a80d65139 597db318e3525ed903694fc8a8d25200 {"aliquot_tag": "ALQ_9958ec4b", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C266664.RNA-Seq.S2_L001_R2.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R2_001.fastq.gz 4195942259 FASTQ S2_L001_R2 unaligned CPTAC3 1671b3e1-6b22-4326-bf41-49312e3c6829 a77eced373b4b2ff82f3ce70b5856e2b {"aliquot_tag": "ALQ_9958ec4b", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C266664.RNA-Seq.transcriptome.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.transcriptome.gdc_realn.bam 17009612181 BAM transcriptome harmonized CPTAC3 d765be70-b7b0-4f23-872e-8f50c16f3119 e961fae7f6b2f5f83e282c571f5023bd {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor"} -C266664.WGS.N C266664 GBM WGS blood_normal 7316UP-393-1105287 7316UP-393-1105287.WholeGenome.RP-2158.bam 59038265208 BAM aligned CPTAC3 4933d676-52c9-43fe-8946-9946412334c6 095f26fa61ffec9eef27ad927a4a2acb {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal"} -C266664.WGS.N.hg38 C266664 GBM WGS blood_normal 7316UP-393-1105287 183166cb-a3d2-40ed-879f-4c904682b10c_wgs_gdc_realn.bam 172857422135 BAM harmonized CPTAC3 f92426ea-9a03-45c1-bece-4af8fc16d4b0 be071ef8353e08f2737e78363c8498b7 {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal"} -C266664.WGS.R C266664 GBM WGS recurrent_tumor 7316UP-553-1105234 7316UP-553-1105234.WholeGenome.RP-2158.bam 66530087101 BAM aligned CPTAC3 9c7c70af-1d81-42d2-859e-3b613a2c0d93 30b1c57fec53b1c25996f3a096ab49df {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor"} -C266664.WGS.R.hg38 C266664 GBM WGS recurrent_tumor 7316UP-553-1105234 01ea1502-dd69-45cb-907b-cd10df01c80f_wgs_gdc_realn.bam 200097554810 BAM harmonized CPTAC3 a3ccc1c4-ddd9-49eb-9d70-10f4458808c0 05ef187e9b05fa3a334870ef54e78792 {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor"} -C266664.WXS.N C266664 GBM WXS blood_normal 7316UP-393-1105287 7316UP-393-1105287.WholeExome.RP-1303.bam 20596651439 BAM aligned CPTAC3 d2dd83e7-1770-4ffa-bf6b-41ba9814306c 6c211d9fabce2892cf5da12bfb4abd5d {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal"} -C266664.WXS.N.hg38 C266664 GBM WXS blood_normal 7316UP-393-1105287 183166cb-a3d2-40ed-879f-4c904682b10c_wxs_gdc_realn.bam 27685143779 BAM harmonized CPTAC3 71300e5d-68de-495d-ba73-68637b1ff049 0a78bfc818e8e71956350c4fcc4e2d53 {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal"} -C266664.WXS.R C266664 GBM WXS recurrent_tumor 7316UP-553-1105234 7316UP-553-1105234.WholeExome.RP-1303.bam 24219633494 BAM aligned CPTAC3 16f314d3-9c0d-4227-8af9-67e9e5027f8e 2c303e1557bd8d84beab270927f52e31 {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor"} -C266664.WXS.R.hg38 C266664 GBM WXS recurrent_tumor 7316UP-553-1105234 01ea1502-dd69-45cb-907b-cd10df01c80f_wxs_gdc_realn.bam 32896304820 BAM harmonized CPTAC3 93d9c6eb-04ed-488c-92db-d2e329cc4ed6 fdd12eb16d639e0c44a6b6753cc22a6a {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor"} -C266664.WXS.T C266664 GBM WXS tumor 7316UP-393-1105269 7316UP-393-1105269.WholeExome.RP-1303.bam 31877144001 BAM aligned CPTAC3 0b7af748-7592-49d9-957e-44e63c0f6e26 913e998c980dfa73b834dd0651a06704 {"aliquot_tag": "ALQ_498d5c3", "gdc_sample_type": "Primary Tumor"} -C266664.WXS.T.hg38 C266664 GBM WXS tumor 7316UP-393-1105269 3af09701-86aa-4741-aa59-9aed8b02f2bf_wxs_gdc_realn.bam 43507973790 BAM harmonized CPTAC3 7fa81b59-b344-463c-91a7-3bf91763635f df7122d0f7d1b182e5150b184946e4f8 {"aliquot_tag": "ALQ_498d5c3", "gdc_sample_type": "Primary Tumor"} -C283515.DUP_16970afa.MethArray.Green.T C283515 GBM Methylation_Array tumor 7316UP-504 205705520096_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d1433262-16e0-4b67-af26-d9bea0b7ab43 9b42994a87b1b31c26290ff2c5cc1b26 {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C283515.DUP_16970afa.MethArray.Red.T C283515 GBM Methylation_Array tumor 7316UP-504 205705520096_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 3463d5d7-e0f6-4adb-b6b5-77299c6dd438 973980c1830fdb1d968701bbf9122cd9 {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C283515.DUP_16970afa.WGS.T C283515 GBM WGS tumor 7316UP-504 7316UP-504.WholeGenome.RP-2158.bam 55266574890 BAM aligned CPTAC3 a2c6a65f-2824-4857-bee9-62b24c49d7de f9169f14213c88b33c991571fd353074 {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C283515.DUP_16970afa.WGS.T.hg38 C283515 GBM WGS tumor 7316UP-504 2a1d8b76-daf0-4068-8ad2-61c163e545a3_wgs_gdc_realn.bam 166572784981 BAM harmonized CPTAC3 f01f616f-baae-41c6-bc30-d7baa888fca2 ba236a69e0e00fc1e2eeb70a5765cebd {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C283515.DUP_16970afa.WXS.T C283515 GBM WXS tumor 7316UP-504 7316UP-504.WholeExome.RP-1303.bam 29107187041 BAM aligned CPTAC3 5c844fd6-1972-4f54-947f-9e802fba0a0c 6e2d29f1cdfc6bd359f87c98c9f0e68a {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C283515.DUP_16970afa.WXS.T.hg38 C283515 GBM WXS tumor 7316UP-504 2a1d8b76-daf0-4068-8ad2-61c163e545a3_wxs_gdc_realn.bam 39488745732 BAM harmonized CPTAC3 fb59bee7-446d-4669-bd78-6234196d0153 48d0752142b31493c2e37ec0c14e59eb {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C283515.DUP_d7547996.MethArray.Green.R C283515 GBM Methylation_Array recurrent_tumor 7316UP-984 205707890172_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9e3e7693-3b73-467b-8b4d-d3b39fd64d19 6201b7856c280184cdeaa69f198c00f2 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C283515.DUP_d7547996.MethArray.Red.R C283515 GBM Methylation_Array recurrent_tumor 7316UP-984 205707890172_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 df1526d9-b8f9-4cbd-b2f6-3902c29d113e f98589d46cfc67ef0bb21db8c552a788 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C283515.DUP_d7547996.WGS.R C283515 GBM WGS recurrent_tumor 7316UP-984 7316UP-984.WholeGenome.RP-2158.bam 57538611032 BAM aligned CPTAC3 03347b56-bd16-41d2-aa03-41d9bc0948e8 c00da0da73319343d312d409ceb16601 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C283515.DUP_d7547996.WGS.R.hg38 C283515 GBM WGS recurrent_tumor 7316UP-984 e6afe946-db00-4032-bb12-f2e7776820a8_wgs_gdc_realn.bam 505434638875 BAM harmonized CPTAC3 6c868a5b-4408-40cf-86d7-aa6815f01158 47cb295a9306e8f54bcd2bc93ec1bcd7 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C283515.DUP_d7547996.WXS.R C283515 GBM WXS recurrent_tumor 7316UP-984 7316UP-984.WholeExome.RP-1303.bam 41783529224 BAM aligned CPTAC3 2fa033b4-2cb4-4201-9f32-5b1f9bf295c8 273b984187750f3633d12b43c04e2c6a {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C283515.DUP_d7547996.WXS.R.hg38 C283515 GBM WXS recurrent_tumor 7316UP-984 e6afe946-db00-4032-bb12-f2e7776820a8_wxs_gdc_realn.bam 57797248604 BAM harmonized CPTAC3 ebb8e701-0bcd-4507-b17e-bcffcd66a4f7 5fa425aaa027280c11b419006d5c72b7 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C283515.miRNA-Seq.R.hg38 C283515 GBM miRNA-Seq recurrent_tumor 7316UP-984-1104775 d52b65ea-506a-4ebf-a64c-0055cdb439d6_mirnaseq_gdc_realn.bam 159660973 BAM harmonized CPTAC3 77450024-c5c6-4398-bc39-7168fd9f72ae 70db5849e2a0ebc4bb35df3354b98cdb {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor"} -C283515.miRNA-Seq.S11_L001_R1.R C283515 GBM miRNA-Seq recurrent_tumor 7316UP-984-1104775 210817_UNC31-K00269_0302_AHLCTHBBXY_CCAACA_S11_L001_R1_001.unaln.bam 139003163 BAM S11_L001_R1 unaligned CPTAC3 05ba2a84-bc05-4050-ad97-13ee22e23931 2c578aa7018fcd6f18e68c0faea323e6 {"aliquot_tag": "ALQ_c34e5354", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C283515.miRNA-Seq.S2_L003_R1.T C283515 GBM miRNA-Seq tumor 7316UP-504-1104814 210817_UNC31-K00269_0302_AHLCTHBBXY_ATTCCT_S2_L003_R1_001.unaln.bam 468397806 BAM S2_L003_R1 unaligned CPTAC3 daffe531-d4de-49d7-a035-b56a098b7c89 d76d4f76d4b05a3e5b106b6923cdec21 {"aliquot_tag": "ALQ_f082514a", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C283515.miRNA-Seq.T.hg38 C283515 GBM miRNA-Seq tumor 7316UP-504-1104814 cd9ddde9-a159-46ac-890a-e289dc221559_mirnaseq_gdc_realn.bam 577165282 BAM harmonized CPTAC3 c2a4f903-52c4-4110-a4a1-22ae072b0f3a 9784dd911262a70b2e9d9ff138b25762 {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor"} -C283515.RNA-Seq.chimeric.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.chimeric.gdc_realn.bam 52068135 BAM chimeric harmonized CPTAC3 c49e3472-835c-4b19-9228-be22252f68b2 3ae1076b4bc66f5e6a854d32e9d6633a {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor"} -C283515.RNA-Seq.chimeric.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.chimeric.gdc_realn.bam 42435047 BAM chimeric harmonized CPTAC3 8b7d8ba7-f2e1-4a63-9e6b-2837cd66ca51 455afe0399f25fcc9306c3974a6a57df {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor"} -C283515.RNA-Seq.genomic.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.genomic.gdc_realn.bam 8996805447 BAM genomic harmonized CPTAC3 1f87bca4-8222-4279-85de-17b7fc809348 fe1699437bb946b9e5d35e68532044c3 {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor"} -C283515.RNA-Seq.genomic.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.genomic.gdc_realn.bam 9269250037 BAM genomic harmonized CPTAC3 7c5a7f1f-7309-4643-b673-ae16e1e917f0 9effa10e394f583b4c7bcb7332ac06de {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor"} -C283515.RNA-Seq.S10_L003_R1.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R1_001.fastq.gz 4296068185 FASTQ S10_L003_R1 unaligned CPTAC3 543f557f-1beb-4456-a0fd-cec8d084ff20 cabfd9546a058e1d4982e38e22d6a325 {"aliquot_tag": "ALQ_c34e5354", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C283515.RNA-Seq.S10_L003_R2.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R2_001.fastq.gz 4586968183 FASTQ S10_L003_R2 unaligned CPTAC3 43aa9185-30e8-46cc-81ff-279a1e9f2350 7a52b03690b60a686b194eba8e775014 {"aliquot_tag": "ALQ_c34e5354", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C283515.RNA-Seq.S13_L004_R1.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R1_001.fastq.gz 4256039693 FASTQ S13_L004_R1 unaligned CPTAC3 788421a7-7d30-4bc6-b77a-688289cf5778 7e85eef9e8d32b12bc0aa9269e902593 {"aliquot_tag": "ALQ_f082514a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C283515.RNA-Seq.S13_L004_R2.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R2_001.fastq.gz 4571169592 FASTQ S13_L004_R2 unaligned CPTAC3 5bccff6e-1343-4834-b5ce-71abd40aa308 ba4d13962dfdcebd31aa1283c7283a1d {"aliquot_tag": "ALQ_f082514a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C283515.RNA-Seq.transcriptome.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.transcriptome.gdc_realn.bam 18773302545 BAM transcriptome harmonized CPTAC3 e72b850a-f46a-47b5-b330-f3f7e563ad6d f056dd13e6da918510ac013d62a66b9e {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor"} -C283515.RNA-Seq.transcriptome.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.transcriptome.gdc_realn.bam 19716562028 BAM transcriptome harmonized CPTAC3 832d14ca-506e-4b78-93b2-1fa4d857ba90 9d384715b4e781467ad51bc34c0b195b {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor"} -C283515.WGS.N C283515 GBM WGS blood_normal 7316UP-504-1105290 7316UP-504-1105290.WholeGenome.RP-2158.bam 62174322060 BAM aligned CPTAC3 7055e943-91d1-49a2-9191-e55ab3342d77 f131f1eafa114d3fb6290627ae38941f {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal"} -C283515.WGS.N.hg38 C283515 GBM WGS blood_normal 7316UP-504-1105290 da35ca10-4e9e-4188-9b4e-ca18d4fa1471_wgs_gdc_realn.bam 189605242037 BAM harmonized CPTAC3 64ff8172-9477-49e2-aab6-53ed112aa73c 8631a0fc11e7da3cbf6e12372b5dddbb {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal"} -C283515.WGS.R C283515 GBM WGS recurrent_tumor 7316UP-984-1105238 7316UP-984-1105238.WholeGenome.RP-2158.bam 52101605944 BAM aligned CPTAC3 02afa2ed-7278-4978-828d-79cc756ab420 44bdf05312430f53b2a3db3e035eb1aa {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor"} -C283515.WGS.R.hg38 C283515 GBM WGS recurrent_tumor 7316UP-984-1105238 a2d2d8dc-08c5-4deb-8129-51b2cfc557fd_wgs_gdc_realn.bam 156734344990 BAM harmonized CPTAC3 d3eb1721-73d8-4f03-a305-0751b0da55ca 69930aa1e1727d71dc45833cd2ab330f {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor"} -C283515.WXS.N C283515 GBM WXS blood_normal 7316UP-504-1105290 7316UP-504-1105290.WholeExome.RP-1303.bam 30160128143 BAM aligned CPTAC3 57eb649b-72ad-45ff-81a0-def3c0c38505 fc4b503aefc35200b0d5bd0cf28e6603 {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal"} -C283515.WXS.N.hg38 C283515 GBM WXS blood_normal 7316UP-504-1105290 da35ca10-4e9e-4188-9b4e-ca18d4fa1471_wxs_gdc_realn.bam 40814897842 BAM harmonized CPTAC3 679408e2-ec25-4d10-add0-74685052f3f9 8b5ff6d930c2c4a45565ccc5ce6fabc2 {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal"} -C283515.WXS.R C283515 GBM WXS recurrent_tumor 7316UP-984-1105238 7316UP-984-1105238.WholeExome.RP-1303.bam 23037540650 BAM aligned CPTAC3 ced68fb8-edc5-4d38-9719-92d95bc271e2 859bc500872b17eb12a8f526187a918c {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor"} -C283515.WXS.R.hg38 C283515 GBM WXS recurrent_tumor 7316UP-984-1105238 a2d2d8dc-08c5-4deb-8129-51b2cfc557fd_wxs_gdc_realn.bam 31071829645 BAM harmonized CPTAC3 fea11175-c790-4201-9d99-141f860b9db7 61b3c9bc3a9a18a8e00e8ac245e930c7 {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor"} -C283515.WXS.T C283515 GBM WXS tumor 7316UP-504-1105193 7316UP-504-1105193.WholeExome.RP-1303.bam 20800549103 BAM aligned CPTAC3 87308625-5842-4300-9202-99ba70be896c 2a7feccbefc6149e138f275c9ed84120 {"aliquot_tag": "ALQ_1152120b", "gdc_sample_type": "Primary Tumor"} -C283515.WXS.T.hg38 C283515 GBM WXS tumor 7316UP-504-1105193 e251ee1d-1c35-4852-89fe-50fc2a4ac948_wxs_gdc_realn.bam 28429320980 BAM harmonized CPTAC3 5aa549bf-6059-4691-9a1a-dc2e334019b0 9c1e35a723770f901d91c9ff8f526175 {"aliquot_tag": "ALQ_1152120b", "gdc_sample_type": "Primary Tumor"} -C287328.DUP_182ecc01.WGS.R C287328 GBM WGS recurrent_tumor 7316UP-1135 7316UP-1135.WholeGenome.RP-2158.bam 53870261548 BAM aligned CPTAC3 027df95d-7ce1-400b-bfbd-cc83e17b3d36 a64b2c596f6b949358c720da3bc13709 {"aliquot_tag": "DUP_182ecc01", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C287328.DUP_182ecc01.WGS.R.hg38 C287328 GBM WGS recurrent_tumor 7316UP-1135 60ab3dbf-0ea9-415f-b3f9-ece94aa19527_wgs_gdc_realn.bam 150326239194 BAM harmonized CPTAC3 ac862633-7552-4aeb-87be-e495530b4d2a ac3319b04d60c3806e2c8d6928310364 {"aliquot_tag": "DUP_182ecc01", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C287328.DUP_3dba5939.MethArray.Green.T C287328 GBM Methylation_Array tumor 7316UP-534 205854140169_R07C01_Grn.idat 13677901 IDAT Green NA CPTAC3 4b16a4f5-e3d9-4e0f-ba76-8958d4bdbb1d 31184fd8c96812e40ed5edbb55695e95 {"aliquot_tag": "DUP_3dba5939", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C287328.DUP_3dba5939.MethArray.Red.T C287328 GBM Methylation_Array tumor 7316UP-534 205854140169_R07C01_Red.idat 13677901 IDAT Red NA CPTAC3 49f15721-6812-4e14-9501-6f457865857e 72f7da59a1b554faa9e67f8308a8ef6b {"aliquot_tag": "DUP_3dba5939", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C287328.miRNA-Seq.R.hg38 C287328 GBM miRNA-Seq recurrent_tumor 7316UP-1135-1104790 777da03c-ca29-4efd-b7c2-4649e0ec4077_mirnaseq_gdc_realn.bam 369364097 BAM harmonized CPTAC3 39f3d534-e8b3-4249-89dd-f3a39a6046aa 9d96509c88b6b9dbf5486fc1c2c7d647 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor"} -C287328.miRNA-Seq.S21_L001_R1.T C287328 GBM miRNA-Seq tumor 7316UP-534-1104760 210817_UNC31-K00269_0302_AHLCTHBBXY_GTTTCG_S21_L001_R1_001.unaln.bam 184222286 BAM S21_L001_R1 unaligned CPTAC3 18e06801-e85c-4849-be82-e07ac019cad0 9f9fc54c80582aea95011acf17584bc7 {"aliquot_tag": "ALQ_58c5ffaa", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C287328.miRNA-Seq.S42_L002_R1.R C287328 GBM miRNA-Seq recurrent_tumor 7316UP-1135-1104790 210817_UNC31-K00269_0302_AHLCTHBBXY_TTAGGC_S42_L002_R1_001.unaln.bam 319199191 BAM S42_L002_R1 unaligned CPTAC3 2fa9a70d-1712-496a-9d14-4e6f844aa5e6 d6c1e358d22ebe37c6b9535913b9a776 {"aliquot_tag": "ALQ_bb530617", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C287328.miRNA-Seq.T.hg38 C287328 GBM miRNA-Seq tumor 7316UP-534-1104760 9b407be1-010b-4c13-be84-c2dbacb91487_mirnaseq_gdc_realn.bam 213128225 BAM harmonized CPTAC3 960726d8-2892-4644-a503-cd3db12b5264 2a2cfb79f30162f33200e30fdcd83405 {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor"} -C287328.RNA-Seq.chimeric.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.chimeric.gdc_realn.bam 60013403 BAM chimeric harmonized CPTAC3 7ba8b976-b83f-43da-b05f-cb77b0b32c3a a773957cabcb5a859ded9e69a9845dd1 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor"} -C287328.RNA-Seq.chimeric.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.chimeric.gdc_realn.bam 154629104 BAM chimeric harmonized CPTAC3 03258bd7-d683-4dc8-bd6e-e6d1ee6e7e13 5ebb5aa37fb2e67342713c1b1b495db4 {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor"} -C287328.RNA-Seq.genomic.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.genomic.gdc_realn.bam 10333048636 BAM genomic harmonized CPTAC3 da1d494b-44f0-4d5a-8782-4747759fb8be ce300bb3dcb2859d7f6cfd7e18251278 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor"} -C287328.RNA-Seq.genomic.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.genomic.gdc_realn.bam 8476784443 BAM genomic harmonized CPTAC3 aaf5ce71-ec46-4424-a311-501e099d4b44 2e1c4bd66980dd615a5f87e1dfe121ea {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor"} -C287328.RNA-Seq.S4_L001_R1.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R1_001.fastq.gz 3650680707 FASTQ S4_L001_R1 unaligned CPTAC3 1500544e-8a1a-4d0d-a855-c856fd31993b 229fc5ee36a221a91f1159576d80a1ee {"aliquot_tag": "ALQ_bb530617", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C287328.RNA-Seq.S4_L001_R1.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R1_001.fastq.gz 4021895606 FASTQ S4_L001_R1 unaligned CPTAC3 fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57 58b126fcbf37c33292d56137155292c3 {"aliquot_tag": "ALQ_58c5ffaa", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C287328.RNA-Seq.S4_L001_R2.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R2_001.fastq.gz 4282999398 FASTQ S4_L001_R2 unaligned CPTAC3 60d74915-2063-4467-930b-7845844fbd7b cb3087afa930b32fd23922a9c623fadf {"aliquot_tag": "ALQ_bb530617", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C287328.RNA-Seq.S4_L001_R2.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R2_001.fastq.gz 4377680066 FASTQ S4_L001_R2 unaligned CPTAC3 7bd1a599-d790-46ba-8d41-5c9532d1d232 ba61722d8b1b8d6d26596de4f1ef9a95 {"aliquot_tag": "ALQ_58c5ffaa", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C287328.RNA-Seq.transcriptome.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.transcriptome.gdc_realn.bam 12437782701 BAM transcriptome harmonized CPTAC3 c27b66ae-17a0-433b-932f-95f65c86ed75 090f806dd83c1e9e88cf8261c680d5c3 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor"} -C287328.RNA-Seq.transcriptome.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.transcriptome.gdc_realn.bam 16569774458 BAM transcriptome harmonized CPTAC3 11a248ab-ba9d-4dbb-8a94-05c70d9dd30a e212c6e224c05f133352edc8766ad938 {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor"} -C287328.WGS.T C287328 GBM WGS tumor 7316UP-534-1105223 7316UP-534-1105223.WholeGenome.RP-2158.bam 61841060561 BAM aligned CPTAC3 2f8bfbdb-c5ab-49f7-a398-3130a8a0f9ff 710f86254a1a9e9a702ceaaa9309c532 {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor"} -C287328.WGS.T.hg38 C287328 GBM WGS tumor 7316UP-534-1105223 198d468f-807f-4fbc-80c3-db5d8d0b859f_wgs_gdc_realn.bam 182584284428 BAM harmonized CPTAC3 a3bcdd86-6bcb-408f-ba68-c4e56a8110ba 6510f6f33772d6d2c099f6216b400a88 {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor"} -C287328.WXS.N C287328 GBM WXS blood_normal 7316UP-534-1105211 7316UP-534-1105211.WholeExome.RP-1303.bam 26048801345 BAM aligned CPTAC3 aa55c9e6-5f54-4642-a1f3-aa5110440f74 5dca536e5e11f8efadaadb3d771773d0 {"aliquot_tag": "ALQ_def4fc75", "gdc_sample_type": "Blood Derived Normal"} -C287328.WXS.N.hg38 C287328 GBM WXS blood_normal 7316UP-534-1105211 45e6c90a-cad9-48e8-825c-524447251d9d_wxs_gdc_realn.bam 35548163635 BAM harmonized CPTAC3 15e46e1d-5773-424e-9e9b-3707fd58322a 5f0b304e25a5054dcd3d2f02eb26b297 {"aliquot_tag": "ALQ_def4fc75", "gdc_sample_type": "Blood Derived Normal"} -C287328.WXS.R C287328 GBM WXS recurrent_tumor 7316UP-1135-1105253 7316UP-1135-1105253.WholeExome.RP-1303.bam 23940352912 BAM aligned CPTAC3 3c2e153d-dd81-4764-b6fd-a067c9a47d00 aa015c300f779af99554699383c99e68 {"aliquot_tag": "ALQ_3098bd2f", "gdc_sample_type": "Recurrent Tumor"} -C287328.WXS.R.hg38 C287328 GBM WXS recurrent_tumor 7316UP-1135-1105253 d95e214e-46ad-4a63-b086-330764303d0d_wxs_gdc_realn.bam 32463143532 BAM harmonized CPTAC3 0767b6c1-462b-482e-ae62-eead44df14b1 b27b580825b0ad97623eb1450a0f4573 {"aliquot_tag": "ALQ_3098bd2f", "gdc_sample_type": "Recurrent Tumor"} -C287328.WXS.T C287328 GBM WXS tumor 7316UP-534-1105223 7316UP-534-1105223.WholeExome.RP-1303.bam 22424204561 BAM aligned CPTAC3 0a3a21a5-e572-44f0-ad0b-3adcd908f5c9 95beb26fb18fa9b6d5521c618c2fd0c5 {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor"} -C287328.WXS.T.hg38 C287328 GBM WXS tumor 7316UP-534-1105223 198d468f-807f-4fbc-80c3-db5d8d0b859f_wxs_gdc_realn.bam 30300912433 BAM harmonized CPTAC3 bc0a38db-f504-49c1-b50f-25b1cc7af943 617d9b9a27b328d30a365d63c5b8039f {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor"} -C289419.DUP_4747d148.MethArray.Green.R C289419 GBM Methylation_Array recurrent_tumor 7316UP-587 205705520096_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 583ac14a-de77-42ed-8d3f-6baf457b0e47 b846053f197573329034273b1aa86a4e {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C289419.DUP_4747d148.MethArray.Red.R C289419 GBM Methylation_Array recurrent_tumor 7316UP-587 205705520096_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 3323405a-948f-4042-80d5-2378ea7dedb7 02449a07c8599bc956fea32a0df1c222 {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C289419.DUP_4747d148.WGS.R C289419 GBM WGS recurrent_tumor 7316UP-587 7316UP-587.WholeGenome.RP-2158.bam 55102241327 BAM aligned CPTAC3 78c622ca-de9d-4208-9ee5-7c5be7e50bcd c51145d3c43b87a842dddf9679f9f666 {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C289419.DUP_4747d148.WGS.R.hg38 C289419 GBM WGS recurrent_tumor 7316UP-587 475005fe-89ac-4683-9abc-a6b861063f3d_wgs_gdc_realn.bam 163224253840 BAM harmonized CPTAC3 fdce7121-072b-4afc-bb06-141ac3a6abc3 31ed465910ff2a44bc04e0cdd258790e {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C289419.DUP_4747d148.WXS.R C289419 GBM WXS recurrent_tumor 7316UP-587 7316UP-587.WholeExome.RP-1303.bam 25018513643 BAM aligned CPTAC3 77a7e8d5-aa0f-4598-891a-4bd243f8d40d b7dc79e71b7b53f82af6dcb4cbb2ee22 {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C289419.DUP_4747d148.WXS.R.hg38 C289419 GBM WXS recurrent_tumor 7316UP-587 475005fe-89ac-4683-9abc-a6b861063f3d_wxs_gdc_realn.bam 86608571475 BAM harmonized CPTAC3 161cc500-79dd-44f1-a3be-d36f93361df7 1e7dd8bc3b0ed243891bc86fd7c0f2fe {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C289419.DUP_ebf29e44.MethArray.Green.T C289419 GBM Methylation_Array tumor 7316UP-547 205555380097_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ed9668f6-8b96-4536-975f-51fc578f4702 ff7166a175272594659db42e8fbf97ad {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C289419.DUP_ebf29e44.MethArray.Red.T C289419 GBM Methylation_Array tumor 7316UP-547 205555380097_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 06ca8f2e-4333-44c5-992a-44533882b195 8174e4829fdc0d2f4c083428d2a0bfd0 {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C289419.DUP_ebf29e44.WGS.T C289419 GBM WGS tumor 7316UP-547 7316UP-547.WholeGenome.RP-2158.bam 54186350616 BAM aligned CPTAC3 fb931cb0-6b32-4e8f-b0b9-8bc0f8097750 597eddbc14f6e0d0f7df3b8918a88b3d {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C289419.DUP_ebf29e44.WGS.T.hg38 C289419 GBM WGS tumor 7316UP-547 4d704111-c691-4670-b26a-c087157c5729_wgs_gdc_realn.bam 162941984332 BAM harmonized CPTAC3 87df8153-1621-45ef-84f6-475e6b344c45 86d0f1ae54c3427fe8bcb74c8ba3630d {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C289419.DUP_ebf29e44.WXS.T C289419 GBM WXS tumor 7316UP-547 7316UP-547.WholeExome.RP-1303.bam 41078607528 BAM aligned CPTAC3 cc5a2977-b9a0-4292-9f2e-7e2fc2f183da 1773a62155a9c13ed4f01b9dd9af3c63 {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C289419.DUP_ebf29e44.WXS.T.hg38 C289419 GBM WXS tumor 7316UP-547 4d704111-c691-4670-b26a-c087157c5729_wxs_gdc_realn.bam 57598635661 BAM harmonized CPTAC3 56d4c848-6cf4-4228-ad97-d3ab5056812d 1d2468e27f9d57ec272c6106350b1131 {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C289419.miRNA-Seq.R.hg38 C289419 GBM miRNA-Seq recurrent_tumor 7316UP-587-1104762 8f969309-dc45-40b0-b623-00f7d7895b73_mirnaseq_gdc_realn.bam 420583627 BAM harmonized CPTAC3 2515679a-16a4-4c48-8e7c-27778bccf3ec 057ff54cef6050a312dd966d33054057 {"aliquot_tag": "ALQ_77a659b4", "gdc_sample_type": "Recurrent Tumor"} -C289419.miRNA-Seq.S16_L001_R1.R C289419 GBM miRNA-Seq recurrent_tumor 7316UP-587-1104762 210817_UNC31-K00269_0302_AHLCTHBBXY_GAGTGG_S16_L001_R1_001.unaln.bam 358193007 BAM S16_L001_R1 unaligned CPTAC3 5c73e592-f5eb-461c-99c2-99d834cf8749 02e20b5d1c54f84a5eb198af8bdd6cf3 {"aliquot_tag": "ALQ_77a659b4", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C289419.miRNA-Seq.S18_L003_R1.T C289419 GBM miRNA-Seq tumor 7316UP-547-1104805 210817_UNC31-K00269_0302_AHLCTHBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 189609311 BAM S18_L003_R1 unaligned CPTAC3 03b0c8c5-4ebc-43dc-b603-8b14995f8831 934836fc337e4e87305a531b0d5d8628 {"aliquot_tag": "ALQ_aef8cc22", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C289419.miRNA-Seq.T.hg38 C289419 GBM miRNA-Seq tumor 7316UP-547-1104805 38fa8f97-9447-4e3e-b7bf-6fa003e798bc_mirnaseq_gdc_realn.bam 217779080 BAM harmonized CPTAC3 c5b80362-7fad-4c2b-a7ac-83abe32e9c3f 3e701c905cb6921fe6730cfe887ab932 {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor"} -C289419.RNA-Seq.chimeric.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.chimeric.gdc_realn.bam 72317694 BAM chimeric harmonized CPTAC3 11b3a88b-5a03-4efb-95e7-d9a67cb204c4 bc548b3fbea02a43d4f0c3cfc61a91f3 {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor"} -C289419.RNA-Seq.genomic.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.genomic.gdc_realn.bam 7955591268 BAM genomic harmonized CPTAC3 ae9fdcdd-bfb0-402d-9231-fb9cd8ec8544 916faea0ceea9e3e3235b423c701de64 {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor"} -C289419.RNA-Seq.S18_L005_R1.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R1_001.fastq.gz 3682036039 FASTQ S18_L005_R1 unaligned CPTAC3 31e45219-fd63-4028-9ca3-e3fa1ca82f60 c4ac7bb02c993a73d08b25f155dd0b73 {"aliquot_tag": "ALQ_aef8cc22", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C289419.RNA-Seq.S18_L005_R2.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R2_001.fastq.gz 3881768353 FASTQ S18_L005_R2 unaligned CPTAC3 cd0e07cb-3358-4e26-88fa-5cc0839cda33 daa166c1651c07a9f6cbb173c0f67278 {"aliquot_tag": "ALQ_aef8cc22", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C289419.RNA-Seq.transcriptome.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.transcriptome.gdc_realn.bam 15674380411 BAM transcriptome harmonized CPTAC3 a8417476-7393-4f8f-9daa-215648417fa7 1153c3c1da2acca1bd8ad4069a7e6acf {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor"} -C289419.WGS.N C289419 GBM WGS blood_normal 7316UP-587-1105213 7316UP-587-1105213.WholeGenome.RP-2158.bam 52502221675 BAM aligned CPTAC3 e90c2130-4037-4410-8cb5-da284867906a d56b3b3bb5560ba9fe58e74871ce6f12 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal"} -C289419.WGS.N.hg38 C289419 GBM WGS blood_normal 7316UP-587-1105213 6d9ca0ff-6baf-4667-aada-5fc3f89a2cc0_wgs_gdc_realn.bam 152202150533 BAM harmonized CPTAC3 3206bc3b-648f-40f0-90d4-3914a2173ae6 23fd00960729f7e47d97f48dac532e06 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal"} -C289419.WGS.R C289419 GBM WGS recurrent_tumor 7316UP-587-1105225 7316UP-587-1105225.WholeGenome.RP-2158.bam 56534424736 BAM aligned CPTAC3 3ae88dfc-f9c8-465c-8f37-74196b627a80 70f5e0df7a795a4db9ea993fc3f5f8f6 {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor"} -C289419.WGS.R.hg38 C289419 GBM WGS recurrent_tumor 7316UP-587-1105225 cc0ee50b-2361-4e4a-ba62-b66137405b80_wgs_gdc_realn.bam 159336122594 BAM harmonized CPTAC3 387f2766-5e69-4ca0-a98f-76ea8bac00a3 b4bb791e43434adfbe8bbde7b56139b6 {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor"} -C289419.WGS.T C289419 GBM WGS tumor 7316UP-547-1105270 7316UP-547-1105270.WholeGenome.RP-2158.bam 54527158005 BAM aligned CPTAC3 849c3fa9-d265-4a34-b1c5-a6130045cb7a 1f87f8293ae9164dbbe959327d6cf54e {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor"} -C289419.WGS.T.hg38 C289419 GBM WGS tumor 7316UP-547-1105270 1db3a7f3-a22c-4898-82e3-8957c1238080_wgs_gdc_realn.bam 158317583519 BAM harmonized CPTAC3 66088cb3-52d4-4923-80d8-c9f6467076ab 0af2da871705865d2ed9bbbfd873dcb0 {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor"} -C289419.WXS.N C289419 GBM WXS blood_normal 7316UP-587-1105213 7316UP-587-1105213.WholeExome.RP-1303.bam 25496316378 BAM aligned CPTAC3 d0e8eefb-202d-4629-9acd-a94b4e1864a9 f0e7da22f9e92d614643f3de6a965016 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal"} -C289419.WXS.N.hg38 C289419 GBM WXS blood_normal 7316UP-587-1105213 6d9ca0ff-6baf-4667-aada-5fc3f89a2cc0_wxs_gdc_realn.bam 34647910087 BAM harmonized CPTAC3 2d7988a7-00be-41aa-89f9-05b70794185e 8e6c36a0088904377baa04a3b34e4c45 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal"} -C289419.WXS.R C289419 GBM WXS recurrent_tumor 7316UP-587-1105225 7316UP-587-1105225.WholeExome.RP-1303.bam 22476273863 BAM aligned CPTAC3 39fd310f-e21d-484e-8764-95478d310803 be5b306cd0b545b5d3e9b9423d825f0d {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor"} -C289419.WXS.R.hg38 C289419 GBM WXS recurrent_tumor 7316UP-587-1105225 cc0ee50b-2361-4e4a-ba62-b66137405b80_wxs_gdc_realn.bam 30749277855 BAM harmonized CPTAC3 a3be227a-3efb-49fb-b435-1885f567a6e5 9e3a772df0d6106592442d4fdd8faabc {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor"} -C289419.WXS.T C289419 GBM WXS tumor 7316UP-547-1105270 7316UP-547-1105270.WholeExome.RP-1303.bam 27840699156 BAM aligned CPTAC3 a28c6ed4-40bd-415b-b9c7-590a62ec8555 4f192acbc7a33bd084063a0e6de9ab52 {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor"} -C289419.WXS.T.hg38 C289419 GBM WXS tumor 7316UP-547-1105270 1db3a7f3-a22c-4898-82e3-8957c1238080_wxs_gdc_realn.bam 38434530527 BAM harmonized CPTAC3 7ca5f822-55be-4e81-81e4-5542cf2b6fe1 415deb3fc0d9dedd75888f8d951c99d6 {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor"} -C298152.DUP_59d69c3d.MethArray.Green.R C298152 GBM Methylation_Array recurrent_tumor 7316UP-574 205555380064_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 edaada5d-7321-4231-ad85-c55ca06dd1f0 fc651c84f9143e9d3cb969da5084bacd {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C298152.DUP_59d69c3d.MethArray.Red.R C298152 GBM Methylation_Array recurrent_tumor 7316UP-574 205555380064_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 23407a16-a55f-4ac6-9250-7ce0718eca1f 786c81259392e0ac00b88d4feb94457f {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C298152.DUP_59d69c3d.WGS.R C298152 GBM WGS recurrent_tumor 7316UP-574 7316UP-574.WholeGenome.RP-2158.bam 63229930879 BAM aligned CPTAC3 28e504fa-7e48-49d6-84bd-6f5ab234a166 1a2d41be9ed8fdd547ea211146b54333 {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C298152.DUP_59d69c3d.WGS.R.hg38 C298152 GBM WGS recurrent_tumor 7316UP-574 7130d870-9836-4df0-a895-94a82a91781a_wgs_gdc_realn.bam 190684301834 BAM harmonized CPTAC3 e7c01984-0f48-489b-8644-5e8b61780d1a b2e6e1c7569b79655ee53130d3aa5d8a {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C298152.DUP_59d69c3d.WXS.R C298152 GBM WXS recurrent_tumor 7316UP-574 7316UP-574.WholeExome.RP-1303.bam 22111980929 BAM aligned CPTAC3 39dcc1cd-5629-4b3b-9842-e60f92135a92 d0e7aa642f1dcfb5ab6cdf5567663ed4 {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C298152.DUP_59d69c3d.WXS.R.hg38 C298152 GBM WXS recurrent_tumor 7316UP-574 7130d870-9836-4df0-a895-94a82a91781a_wxs_gdc_realn.bam 30062262908 BAM harmonized CPTAC3 2f2efdd7-991e-4ea9-96e0-e166ec2aa41b 5e1ca43bf089a5b7eaa0a1c6000622b1 {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C298152.DUP_cb6d6363.MethArray.Green.T C298152 GBM Methylation_Array tumor 7316UP-426 205854150030_R01C01_Grn.idat 13677903 IDAT Green NA CPTAC3 67b08732-3e8e-443c-a0ff-890c3d056538 d23037edf01388fa9b3628ff39337e42 {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C298152.DUP_cb6d6363.MethArray.Red.T C298152 GBM Methylation_Array tumor 7316UP-426 205854150030_R01C01_Red.idat 13677903 IDAT Red NA CPTAC3 84143f71-2af0-4fb1-84df-83d52574634d 6754a885a5cb2dbfdf33354c0df6e3ee {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C298152.DUP_cb6d6363.WGS.T C298152 GBM WGS tumor 7316UP-426 7316UP-426.WholeGenome.RP-2158.bam 58796212790 BAM aligned CPTAC3 6cce2775-8b95-4d16-9214-9c8ea3941e00 ba0ee3e9e28eaaaf258434659d568a9f {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C298152.DUP_cb6d6363.WGS.T.hg38 C298152 GBM WGS tumor 7316UP-426 2359e710-f546-4a7d-9b12-c9c3028c8b92_wgs_gdc_realn.bam 175199001890 BAM harmonized CPTAC3 fddc2fe2-8b91-4754-bf9c-cb63b03f66ae 88598256707fd8a08dbfc78aa78c8e5d {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C298152.DUP_cb6d6363.WXS.T C298152 GBM WXS tumor 7316UP-426 7316UP-426.WholeExome.RP-1303.bam 29302896556 BAM aligned CPTAC3 7d0482ee-89c1-4be6-80d5-b182cac71f87 84f5f9e3cb5183ba0a37b845535cdf96 {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C298152.DUP_cb6d6363.WXS.T.hg38 C298152 GBM WXS tumor 7316UP-426 2359e710-f546-4a7d-9b12-c9c3028c8b92_wxs_gdc_realn.bam 39654770362 BAM harmonized CPTAC3 96617688-1ee2-4e4a-b128-6e170cee9966 8e7d71c36ad0999daad8eb8ea266fe65 {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C298152.miRNA-Seq.R.hg38 C298152 GBM miRNA-Seq recurrent_tumor 7316UP-574-1104761 a7688766-868f-4b62-b5e8-34c2a5d55256_mirnaseq_gdc_realn.bam 299273196 BAM harmonized CPTAC3 91799c2b-02c3-4303-9427-3dd47f4acaf1 3ca45c3c34aa1585baf25c847e1a166d {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor"} -C298152.miRNA-Seq.S13_L001_R1.R C298152 GBM miRNA-Seq recurrent_tumor 7316UP-574-1104761 210817_UNC31-K00269_0302_AHLCTHBBXY_CGTACG_S13_L001_R1_001.unaln.bam 259115918 BAM S13_L001_R1 unaligned CPTAC3 9dcdfaea-d092-42e1-a687-95d151494b95 ce3ef63625f6f336770eea431e71dc86 {"aliquot_tag": "ALQ_26296f46", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C298152.miRNA-Seq.S32_L002_R1.T C298152 GBM miRNA-Seq tumor 7316UP-426-1104798 210817_UNC31-K00269_0302_AHLCTHBBXY_GGCTAC_S32_L002_R1_001.unaln.bam 323725172 BAM S32_L002_R1 unaligned CPTAC3 13875ba7-959b-4cf8-950a-80da1a1fce6c e00929cd3417534f37b281689e6dccd3 {"aliquot_tag": "ALQ_d13cf72f", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C298152.miRNA-Seq.T.hg38 C298152 GBM miRNA-Seq tumor 7316UP-426-1104798 3a90dd24-dab0-492d-b2a5-aef0575221ce_mirnaseq_gdc_realn.bam 379104263 BAM harmonized CPTAC3 f6d87ff9-7cf0-45b9-b81e-4f0643ef93ff 6634fdbdc3ad6400852be5d3d6c8e0e7 {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor"} -C298152.RNA-Seq.chimeric.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.chimeric.gdc_realn.bam 57710791 BAM chimeric harmonized CPTAC3 4f6eee50-b75d-4cb5-850d-6e5d1c0935a4 6d5e30c4321ec01e1b4e6cda8fac3e62 {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor"} -C298152.RNA-Seq.chimeric.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.chimeric.gdc_realn.bam 138598553 BAM chimeric harmonized CPTAC3 433783fb-5b4d-41bd-9d2b-11e1aa75f5bd 9059407aee331cc59efa70c633e2f0d7 {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor"} -C298152.RNA-Seq.genomic.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.genomic.gdc_realn.bam 8402037730 BAM genomic harmonized CPTAC3 a95076f7-665f-4db1-bd24-92df0fab9f9d 81d677a79efa836e021742c99ff0ca2e {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor"} -C298152.RNA-Seq.genomic.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.genomic.gdc_realn.bam 9092434487 BAM genomic harmonized CPTAC3 d550de2a-003c-4124-93d9-ecb3bc8ae815 5b34f2a1f44db529a2416d34f0156765 {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor"} -C298152.RNA-Seq.S19_L005_R1.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R1_001.fastq.gz 4161951146 FASTQ S19_L005_R1 unaligned CPTAC3 dbcc610d-609b-4631-a7fb-ce1d9879e0a1 d6288d6b5fc855cf5d326a658a70c4c6 {"aliquot_tag": "ALQ_d13cf72f", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C298152.RNA-Seq.S19_L005_R2.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R2_001.fastq.gz 4490884067 FASTQ S19_L005_R2 unaligned CPTAC3 96a07c32-d50d-48da-b9da-fdd6b37eac1c 45cf661e35c8c83818097b8cc6ff1945 {"aliquot_tag": "ALQ_d13cf72f", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C298152.RNA-Seq.S8_L002_R1.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3775818479 FASTQ S8_L002_R1 unaligned CPTAC3 cc854351-5e28-4fa1-ba76-ab67e8069f29 a1efd734093839f29919f5946bf12066 {"aliquot_tag": "ALQ_26296f46", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C298152.RNA-Seq.S8_L002_R2.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4074073377 FASTQ S8_L002_R2 unaligned CPTAC3 114ff49b-5eae-4fa1-8beb-1f4ae9cd8638 e349aa1bad948aafbbb6f63629cc8078 {"aliquot_tag": "ALQ_26296f46", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C298152.RNA-Seq.transcriptome.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.transcriptome.gdc_realn.bam 17759110838 BAM transcriptome harmonized CPTAC3 c8a10008-2b2b-40e5-b0ed-1b56073ab93f d68cf029185bebcbc508e9d0a71befe8 {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor"} -C298152.RNA-Seq.transcriptome.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.transcriptome.gdc_realn.bam 16035355872 BAM transcriptome harmonized CPTAC3 3e7aee56-96b3-4835-a10c-b08ee18db184 ac3790e2ea90a1ced79981a5a7ffd77d {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor"} -C298152.WGS.N C298152 GBM WGS blood_normal 7316UP-426-1105208 7316UP-426-1105208.WholeGenome.RP-2158.bam 52239643037 BAM aligned CPTAC3 9ff18167-b8d3-4e22-9eb1-629b71ec9e77 a15b0b8109d677e2370d43cb3fb6333e {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal"} -C298152.WGS.N.hg38 C298152 GBM WGS blood_normal 7316UP-426-1105208 d4007c3c-2941-40e3-a88d-57c532441433_wgs_gdc_realn.bam 152595568147 BAM harmonized CPTAC3 d58f2823-1d0b-4d87-a8cf-60d3880cad66 a8921378597d2f8871525aa2b2847aa7 {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal"} -C298152.WGS.R C298152 GBM WGS recurrent_tumor 7316UP-574-1105224 7316UP-574-1105224.WholeGenome.RP-2158.bam 41014723398 BAM aligned CPTAC3 c820d71e-45d9-42a5-afb5-f663772bf93d 082d90ab89f83e5c7d1ada5af831b00e {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor"} -C298152.WGS.R.hg38 C298152 GBM WGS recurrent_tumor 7316UP-574-1105224 5474e855-4847-4ff2-a327-8538e6c5b855_wgs_gdc_realn.bam 120088532371 BAM harmonized CPTAC3 d90a6d1d-8815-4c36-bf25-7ac3437c9dc7 b83c3e505aeb361609c124d5af7edcf0 {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor"} -C298152.WGS.T C298152 GBM WGS tumor 7316UP-426-1105263 7316UP-426-1105263.WholeGenome.RP-2158.bam 49286697852 BAM aligned CPTAC3 deecc9f5-4d5e-4279-8878-4dcf92b9cfee bf1510636c4b5b3ff54cfe5b7c7d406c {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor"} -C298152.WGS.T.hg38 C298152 GBM WGS tumor 7316UP-426-1105263 45164d3a-0a7f-498f-a025-eae34981591f_wgs_gdc_realn.bam 144012196964 BAM harmonized CPTAC3 32e43bb8-4fb5-4435-99b0-f09f6f817dd0 e51d20ce4d30ade18f4081a28ea3c014 {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor"} -C298152.WXS.N C298152 GBM WXS blood_normal 7316UP-426-1105208 7316UP-426-1105208.WholeExome.RP-1303.bam 25672742169 BAM aligned CPTAC3 7d887a99-c66a-4607-90ca-bb8dfd2859f6 e7f60cbe275f19228a27c22a4b43cd23 {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal"} -C298152.WXS.N.hg38 C298152 GBM WXS blood_normal 7316UP-426-1105208 d4007c3c-2941-40e3-a88d-57c532441433_wxs_gdc_realn.bam 34782271499 BAM harmonized CPTAC3 353a8df5-cb48-4786-81c4-74d7ad90a33d b50a53536c98c19fc5dc6bc0a008e3c8 {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal"} -C298152.WXS.R C298152 GBM WXS recurrent_tumor 7316UP-574-1105224 7316UP-574-1105224.WholeExome.RP-1303.bam 22495865946 BAM aligned CPTAC3 f94f3fac-a780-4952-9e78-6e1ef8bbec9d 0e68bc03268af8b4b48bc603833bea35 {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor"} -C298152.WXS.R.hg38 C298152 GBM WXS recurrent_tumor 7316UP-574-1105224 5474e855-4847-4ff2-a327-8538e6c5b855_wxs_gdc_realn.bam 30187839362 BAM harmonized CPTAC3 4931cd9f-a5c7-4482-9a7f-702b8eda4ab6 93b1439363e56482638b808097c0f8a2 {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor"} -C298152.WXS.T C298152 GBM WXS tumor 7316UP-426-1105263 7316UP-426-1105263.WholeExome.RP-1303.bam 23507037727 BAM aligned CPTAC3 df9aa884-5b5b-4f19-89e3-732c4a4a45f3 d9b5e1d6e45d8acc274a4be19ac51d4a {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor"} -C298152.WXS.T.hg38 C298152 GBM WXS tumor 7316UP-426-1105263 45164d3a-0a7f-498f-a025-eae34981591f_wxs_gdc_realn.bam 31745175469 BAM harmonized CPTAC3 83633780-d4aa-48d6-bf32-90efafb8eb91 6a3cf55a938afe32619c18e1acbbf2c7 {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor"} -C317832.DUP_4b7f0398.MethArray.Green.T C317832 GBM Methylation_Array tumor 7316UP-435 205705520087_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d3bee606-2dd4-4825-8aaf-62a416cbdc44 3f48c6a17d87a4953d197e1ffd0fa080 {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C317832.DUP_4b7f0398.MethArray.Red.T C317832 GBM Methylation_Array tumor 7316UP-435 205705520087_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 3917878c-105b-473b-bca9-10ebb2572b6e 27747077b0dc4bebc0038a9316758c48 {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C317832.DUP_4b7f0398.WGS.T C317832 GBM WGS tumor 7316UP-435 7316UP-435.WholeGenome.RP-2158.bam 53288759776 BAM aligned CPTAC3 e46c08f7-a93d-4c16-b65a-040c13d4e967 5268fb201438283101da1715c0a3d98d {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C317832.DUP_4b7f0398.WGS.T.hg38 C317832 GBM WGS tumor 7316UP-435 a8de32a7-4eaf-498c-8b3f-17a2c36aba44_wgs_gdc_realn.bam 160872598512 BAM harmonized CPTAC3 90d89778-ba90-4096-b585-894a2c7a81f2 1b8e6214b88cb7b9ce576374d831cd7b {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C317832.DUP_4b7f0398.WXS.T C317832 GBM WXS tumor 7316UP-435 7316UP-435.WholeExome.RP-1303.bam 28697889466 BAM aligned CPTAC3 f7cc3fc4-a124-47a5-8153-75799ffb0d7b 1cf98d6fe9f802bc2e960d58c29c3d8a {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C317832.DUP_4b7f0398.WXS.T.hg38 C317832 GBM WXS tumor 7316UP-435 a8de32a7-4eaf-498c-8b3f-17a2c36aba44_wxs_gdc_realn.bam 38774843412 BAM harmonized CPTAC3 5b5d151b-3c7f-423a-9684-a301d78e9be5 04fd3a018e77c40cae34efe02bd3c072 {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C317832.MethArray.Green.R C317832 GBM Methylation_Array recurrent_tumor 7316UP-1110 205707890105_R02C01_Grn.idat 13677915 IDAT Green NA CPTAC3 c1a97839-5772-45fa-91e7-426e00766c41 1d3cf81fbea33c2bdfe529ca75754a4e {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor"} -C317832.MethArray.Red.R C317832 GBM Methylation_Array recurrent_tumor 7316UP-1110 205707890105_R02C01_Red.idat 13677915 IDAT Red NA CPTAC3 3710e0b6-75b9-466e-ba27-ee1120dca7e5 b4dc0f7f1242031ec281e7599ef03dda {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor"} -C317832.WGS.N C317832 GBM WGS blood_normal 7316UP-435-1105209 7316UP-435-1105209.WholeGenome.RP-2158.bam 50849044617 BAM aligned CPTAC3 91c2215c-9340-4ea4-a15e-783589faf7b6 5f75808e11126920dfc3de0631e194bd {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal"} -C317832.WGS.N.hg38 C317832 GBM WGS blood_normal 7316UP-435-1105209 304f74bd-879e-4f3c-bdb4-46d22910393e_wgs_gdc_realn.bam 153978766927 BAM harmonized CPTAC3 0fa25367-cd71-4bee-a9ce-c0487935bf1a 78ead454bfe95122ee9c6cef48b94146 {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal"} -C317832.WGS.R C317832 GBM WGS recurrent_tumor 7316UP-1110 7316UP-1110.WholeGenome.RP-2158.bam 56423818859 BAM aligned CPTAC3 02482033-178d-4b98-a21e-18bcd9afb7b1 3975b29b666a7d917f8fb6c2078c99a0 {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor"} -C317832.WGS.R.hg38 C317832 GBM WGS recurrent_tumor 7316UP-1110 3c191d52-d917-4258-97ff-2dabca4cf093_wgs_gdc_realn.bam 173377160966 BAM harmonized CPTAC3 b5586575-0b82-4089-9cc3-20236ae7f701 98ab8f4e1d4bc72f0b1c5b40a6a78ceb {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor"} -C317832.WGS.T C317832 GBM WGS tumor 7316UP-435-1105196 7316UP-435-1105196.WholeGenome.RP-2158.bam 44958525818 BAM aligned CPTAC3 84e61057-d0fb-4f04-b775-d961860a52f4 07cce07c15dcefaa9c313ada9d20d0f1 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor"} -C317832.WGS.T.hg38 C317832 GBM WGS tumor 7316UP-435-1105196 88fc297c-04d4-4bbe-885c-794e65593177_wgs_gdc_realn.bam 133085101660 BAM harmonized CPTAC3 6c345d12-741e-4e98-abfd-337cc774d958 1282fec44ab93ffbcdd71fa7814eac82 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor"} -C317832.WXS.N C317832 GBM WXS blood_normal 7316UP-435-1105209 7316UP-435-1105209.WholeExome.RP-1303.bam 26556342235 BAM aligned CPTAC3 dcb115cc-591d-4eb6-a360-64d4b9d86ef8 31456f5e09f8ed511edbdd6a0646c2ce {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal"} -C317832.WXS.N.hg38 C317832 GBM WXS blood_normal 7316UP-435-1105209 304f74bd-879e-4f3c-bdb4-46d22910393e_wxs_gdc_realn.bam 36135119685 BAM harmonized CPTAC3 2c9924aa-a2fe-4497-ad2d-c730d2f900b5 c7ff4648bf118a492abf66395a7adef8 {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal"} -C317832.WXS.R C317832 GBM WXS recurrent_tumor 7316UP-1110 7316UP-1110.WholeExome.RP-1303.bam 27081556019 BAM aligned CPTAC3 e447bddd-4fa5-4877-993f-40f7483e19ee 1f7687a300143d6162d55f88efeae176 {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor"} -C317832.WXS.R.hg38 C317832 GBM WXS recurrent_tumor 7316UP-1110 3c191d52-d917-4258-97ff-2dabca4cf093_wxs_gdc_realn.bam 36664412702 BAM harmonized CPTAC3 00db774a-2523-429b-9601-fdae463fcf73 c54f6f333989b0f6b41f7ec2c68c69a4 {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor"} -C317832.WXS.T C317832 GBM WXS tumor 7316UP-435-1105196 7316UP-435-1105196.WholeExome.RP-1303.bam 27481233727 BAM aligned CPTAC3 e02a9123-6688-4178-8677-89fd8134cc3d 9facaec81129600431524af4a6ec85f7 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor"} -C317832.WXS.T.hg38 C317832 GBM WXS tumor 7316UP-435-1105196 88fc297c-04d4-4bbe-885c-794e65593177_wxs_gdc_realn.bam 37645362593 BAM harmonized CPTAC3 a3eb79f6-7744-45d2-b66f-8ab2c0a4a670 26392d603ca5f88c08f64f445a8a3141 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor"} -C330255.DUP_cf2197af.MethArray.Green.R C330255 GBM Methylation_Array recurrent_tumor 7316UP-498 205555380064_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 f056898d-a62b-41cf-8f41-e1f747de335a 44606b8afb25eef11bd58a01f2683361 {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C330255.DUP_cf2197af.MethArray.Red.R C330255 GBM Methylation_Array recurrent_tumor 7316UP-498 205555380064_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 ef26f124-b6ed-42f6-8513-fba0981a6ffa 3db0ae3d87767243ed30bac608b469aa {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C330255.DUP_cf2197af.WGS.R C330255 GBM WGS recurrent_tumor 7316UP-498 7316UP-498.WholeGenome.RP-2158.bam 50663364089 BAM aligned CPTAC3 1a97001f-3f96-4ab2-bafd-7f78447b6c12 6b11c21a0d16e74fe97ddd71179977f4 {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C330255.DUP_cf2197af.WGS.R.hg38 C330255 GBM WGS recurrent_tumor 7316UP-498 cb5aa7cc-7710-4fdd-8180-2cf07fe00743_wgs_gdc_realn.bam 152493800449 BAM harmonized CPTAC3 34ec7de0-79a0-48e5-b5f1-1665a77af068 c5ed7a9e54e74fc4e058b297bce8821c {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C330255.DUP_cf2197af.WXS.R C330255 GBM WXS recurrent_tumor 7316UP-498 7316UP-498.WholeExome.RP-1303.bam 26484461682 BAM aligned CPTAC3 876d22c5-5f4b-4d94-809c-6dab7df175e2 458841e0faa96bc69c5c974c2184b6dc {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C330255.DUP_cf2197af.WXS.R.hg38 C330255 GBM WXS recurrent_tumor 7316UP-498 cb5aa7cc-7710-4fdd-8180-2cf07fe00743_wxs_gdc_realn.bam 36005302764 BAM harmonized CPTAC3 b563109a-5b09-47e5-b33e-f23abc5582f9 57ce2f0c321240879802212bf3fc665a {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C330255.MethArray.Green.T C330255 GBM Methylation_Array tumor 7316UP-361 205828590014_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 64be93e0-6886-4934-8215-1862791c5289 ca3f840a220234545df0e6700047cd9c {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor"} -C330255.MethArray.Red.T C330255 GBM Methylation_Array tumor 7316UP-361 205828590014_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 b781886f-f6d3-460f-96ba-f4bd9a8ae3ab 548700e0ab84223a9b30cab09345804f {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor"} -C330255.miRNA-Seq.R.hg38 C330255 GBM miRNA-Seq recurrent_tumor 7316UP-498-1104769 11cbdb74-6fe6-4d57-b070-ec7470bed595_mirnaseq_gdc_realn.bam 79795498 BAM harmonized CPTAC3 b7949a06-9676-4f42-963a-c589cd811445 a243d0d81f66eb91727a4b731a9ef13f {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor"} -C330255.miRNA-Seq.S5_L001_R1.R C330255 GBM miRNA-Seq recurrent_tumor 7316UP-498-1104769 210817_UNC31-K00269_0302_AHLCTHBBXY_CACCGG_S5_L001_R1_001.unaln.bam 70142423 BAM S5_L001_R1 unaligned CPTAC3 8528346e-31c6-4861-bbca-ffa7da3dceb4 4e984059155327af142c59e423bd886c {"aliquot_tag": "ALQ_1181fb13", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C330255.RNA-Seq.chimeric.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.chimeric.gdc_realn.bam 55456025 BAM chimeric harmonized CPTAC3 7842c4ec-cfa3-4461-a175-a49490a49bb9 3de373548a51fc3c5a5dff3e425a0f35 {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor"} -C330255.RNA-Seq.genomic.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.genomic.gdc_realn.bam 7897525386 BAM genomic harmonized CPTAC3 f8c38202-af21-4e32-8b8f-0f39f4596057 1123c3095a6c764f0df7d5db38111047 {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor"} -C330255.RNA-Seq.S12_L003_R1.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R1_001.fastq.gz 3725717285 FASTQ S12_L003_R1 unaligned CPTAC3 ecde968c-8d85-48f1-9b99-adf4c4f9c39c 127d378f32cb62f791b7c600c1a1d704 {"aliquot_tag": "ALQ_1181fb13", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C330255.RNA-Seq.S12_L003_R2.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R2_001.fastq.gz 3991687450 FASTQ S12_L003_R2 unaligned CPTAC3 7d238885-5196-4422-9eed-12e61f4703be e4d93028a0615706eb24a91adebefa20 {"aliquot_tag": "ALQ_1181fb13", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C330255.RNA-Seq.transcriptome.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.transcriptome.gdc_realn.bam 16547318557 BAM transcriptome harmonized CPTAC3 9d8eba1e-f23a-4be4-b161-3492044fb7ef 91a95ba03572d2c12f45eeb72ef3a3d6 {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor"} -C330255.WGS.N C330255 GBM WGS blood_normal 7316UP-361-1105212 7316UP-361-1105212.WholeGenome.RP-2158.bam 52965115662 BAM aligned CPTAC3 9a9eccce-70b8-4e66-85ab-24ec1508dee3 a4475bc46c1d95e0ba198b380171a8c2 {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal"} -C330255.WGS.N.hg38 C330255 GBM WGS blood_normal 7316UP-361-1105212 bd2a9034-9ef8-4f68-a2e7-cde91706a385_wgs_gdc_realn.bam 159124658027 BAM harmonized CPTAC3 417d7c29-a3f8-4a79-b384-d053f4b7051f 7653112000dea1c8a144b5ac92037e25 {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal"} -C330255.WGS.R C330255 GBM WGS recurrent_tumor 7316UP-498-1105232 7316UP-498-1105232.WholeGenome.RP-2158.bam 74755089697 BAM aligned CPTAC3 b958b9b4-1eff-4e71-ad0a-4c94548031bd 3577cd298869d9ba1cc20b817d9f6929 {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor"} -C330255.WGS.R.hg38 C330255 GBM WGS recurrent_tumor 7316UP-498-1105232 13c5f1a2-7dd1-4951-a439-0901fb185e09_wgs_gdc_realn.bam 219426984821 BAM harmonized CPTAC3 89cbb37f-6652-4958-bf54-c796ac87b1f2 5414826ef41319e279cb42b74d13b701 {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor"} -C330255.WGS.T C330255 GBM WGS tumor 7316UP-361 7316UP-361.WholeGenome.RP-2158.bam 58000841700 BAM aligned CPTAC3 c9c95e92-ea1e-4469-b76e-fadaab18848e 95d987bc52732f9878887fe72ceb0c5c {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor"} -C330255.WGS.T.hg38 C330255 GBM WGS tumor 7316UP-361 cad8ffba-1e4f-4f8f-9378-0bd507f2444a_wgs_gdc_realn.bam 171243999389 BAM harmonized CPTAC3 e809e615-2a38-4ebb-bb20-51d162b52ce6 ff4655cd31b5daec55c1c5175ffc0ec1 {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor"} -C330255.WXS.N C330255 GBM WXS blood_normal 7316UP-361-1105212 7316UP-361-1105212.WholeExome.RP-1303.bam 25256547678 BAM aligned CPTAC3 0a15376d-7a40-4bdb-a9b1-df6a0096be32 e8fb639a3aab2e4cad717bd947e4e349 {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal"} -C330255.WXS.N.hg38 C330255 GBM WXS blood_normal 7316UP-361-1105212 bd2a9034-9ef8-4f68-a2e7-cde91706a385_wxs_gdc_realn.bam 34450311649 BAM harmonized CPTAC3 79e34d08-036d-433f-97da-111f791d1978 4d156f82e05baa2099bdc144ce2fee7f {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal"} -C330255.WXS.R C330255 GBM WXS recurrent_tumor 7316UP-498-1105232 7316UP-498-1105232.WholeExome.RP-1303.bam 22564329011 BAM aligned CPTAC3 083f8ddc-75e5-4195-a088-65c614df023a e3fede748f5077274fc1d7a362c9041f {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor"} -C330255.WXS.R.hg38 C330255 GBM WXS recurrent_tumor 7316UP-498-1105232 13c5f1a2-7dd1-4951-a439-0901fb185e09_wxs_gdc_realn.bam 30638579982 BAM harmonized CPTAC3 b071f1a3-9555-4530-8a58-09b927aa0b31 05e88fe9c38b53e561b5554f7870d4ca {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor"} -C330255.WXS.T C330255 GBM WXS tumor 7316UP-361 7316UP-361.WholeExome.RP-1303.bam 47917286279 BAM aligned CPTAC3 2dac6b52-9e5f-4b31-a1b8-aa596110be2e 9b52545903db1810d4a91d365e782e6e {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor"} -C330255.WXS.T.hg38 C330255 GBM WXS tumor 7316UP-361 cad8ffba-1e4f-4f8f-9378-0bd507f2444a_wxs_gdc_realn.bam 66332593745 BAM harmonized CPTAC3 1342f51b-95be-4e96-9d04-5ce16089b486 98c59a5ed555083d5b491c8f51a9d065 {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor"} -C383391.DUP_4db2e37f.MethArray.Green.T C383391 GBM Methylation_Array tumor 7316UP-1108 205854150030_R02C01_Grn.idat 13677903 IDAT Green NA CPTAC3 3521889e-78ca-4e4a-98e7-8c6dd724c00c bcbab84275accce45a336e3e74a66fc2 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C383391.DUP_4db2e37f.MethArray.Red.T C383391 GBM Methylation_Array tumor 7316UP-1108 205854150030_R02C01_Red.idat 13677903 IDAT Red NA CPTAC3 b9e8aade-469f-46c6-90b2-da1f3c8b802b 21e0f82d171a142997fa16d2290d4299 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C383391.DUP_4db2e37f.WGS.T C383391 GBM WGS tumor 7316UP-1108 7316UP-1108.WholeGenome.RP-2158.bam 53823725687 BAM aligned CPTAC3 f06a9ad7-dbaf-432e-bca3-733aa9a56f20 95186712ff2e1473fd0b89c378b46c42 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C383391.DUP_4db2e37f.WGS.T.hg38 C383391 GBM WGS tumor 7316UP-1108 0d5862af-2f59-42b9-b6d8-5c1d84d662e9_wgs_gdc_realn.bam 161247811251 BAM harmonized CPTAC3 e8b33610-74f2-4b5b-b067-8128fe7c1d6d d8342c01d821c368d4043f6d265d75db {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C383391.DUP_4db2e37f.WXS.T C383391 GBM WXS tumor 7316UP-1108 7316UP-1108.WholeExome.RP-1303.bam 27298437644 BAM aligned CPTAC3 48566235-21fb-426d-aca8-c2940c9ff1a4 406338888942b347473a0421bff14c2b {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C383391.DUP_4db2e37f.WXS.T.hg38 C383391 GBM WXS tumor 7316UP-1108 0d5862af-2f59-42b9-b6d8-5c1d84d662e9_wxs_gdc_realn.bam 36902746545 BAM harmonized CPTAC3 7341902c-8501-419d-a4a6-d88859d9a8d8 3ba39e451bf89be39753b44ac5dd78a9 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C383391.DUP_7418231a.miRNA-Seq.R.hg38 C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1581-1104800 f72cb349-3949-4734-bbf7-1635337c9418_mirnaseq_gdc_realn.bam 547134343 BAM harmonized CPTAC3 505d5214-da5f-4d92-9c1f-ef10757af546 e48f89f2ee8f65ec6d03b06f2c1bb144 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_7418231a.miRNA-Seq.S24_L002_R1.R C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1581-1104800 210817_UNC31-K00269_0302_AHLCTHBBXY_AGTCAA_S24_L002_R1_001.unaln.bam 477694077 BAM S24_L002_R1 unaligned CPTAC3 01516117-25ed-48be-8247-f7b972bc9f10 3ccc03623424745c080912bdf78c07ae {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_7418231a.RNA-Seq.chimeric.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.chimeric.gdc_realn.bam 125167966 BAM chimeric harmonized CPTAC3 4230ea7e-deca-4550-a718-9ecdd8ae6690 e2f85fe93f8c8cc1558c21a4ded5ccc9 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_7418231a.RNA-Seq.genomic.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.genomic.gdc_realn.bam 10428848178 BAM genomic harmonized CPTAC3 152f351f-be9f-4c2d-823a-aeb5fb792399 0eab7fa79449dafc1de6a137cd438aa6 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_7418231a.RNA-Seq.S15_L004_R1.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R1_001.fastq.gz 4172474327 FASTQ S15_L004_R1 unaligned CPTAC3 02d0d950-c97c-4179-8150-9154a973d456 f6ffbdef7d1b0d9dd73086215cceabe9 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_7418231a.RNA-Seq.S15_L004_R2.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R2_001.fastq.gz 4496680542 FASTQ S15_L004_R2 unaligned CPTAC3 1d3003c2-2047-421b-9d96-18dd27804338 fc40324bfc2e65ab2507d87ee34ae194 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_7418231a.RNA-Seq.transcriptome.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.transcriptome.gdc_realn.bam 16034224270 BAM transcriptome harmonized CPTAC3 081659c6-8e1f-4173-9841-57ecc2fb2664 25dff08435a7074c6542df368daffb74 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_e70392a0.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1581-1105265 7316UP-1581-1105265.WholeGenome.RP-2158.bam 58288588843 BAM aligned CPTAC3 10a5d77e-713b-43a6-93d5-a6e26be1aa59 efd43215c8ba00aa19ee89ee2768172f {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_e70392a0.WGS.R.hg38 C383391 GBM WGS recurrent_tumor 7316UP-1581-1105265 4ca00115-595c-4479-b2fc-65fc8f019098_wgs_gdc_realn.bam 163302965467 BAM harmonized CPTAC3 6fad7247-7b54-4d01-bfc4-a7317a7e89a2 6d1d7ad0dc491a00aa8fa5b765431391 {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_e70392a0.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1581-1105265 7316UP-1581-1105265.WholeExome.RP-1303.bam 26619962510 BAM aligned CPTAC3 7904fa5e-78b1-420f-bf6a-1c2297bc7895 a6c1f69cfc343d3053d10fb67a4aadcd {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_e70392a0.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1581-1105265 4ca00115-595c-4479-b2fc-65fc8f019098_wxs_gdc_realn.bam 35998073077 BAM harmonized CPTAC3 9787a83d-885f-49df-a7b3-b9ab787174bd a07c127be80b13ed9c58d919053d2449 {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_f8dd154c.MethArray.Green.R C383391 GBM Methylation_Array recurrent_tumor 7316UP-1766 205705520154_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 dc711e37-2e4a-43c1-ad79-978e25d89615 02640c824fc98eeae20683755f9f8524 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_f8dd154c.MethArray.Red.R C383391 GBM Methylation_Array recurrent_tumor 7316UP-1766 205705520154_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2ec4977d-65bf-435b-acfb-142e5a9199eb 108fd44f259fc9136975baa5e1065574 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_f8dd154c.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766 7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM aligned CPTAC3 75d29a76-a9e8-4a57-b231-22c907d64783 f91acf3d6e5fbabf998e426aaae34369 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_f8dd154c.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766 7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM aligned CPTAC3 92903bf8-833a-4614-a6ea-00fcbb929ffd f91acf3d6e5fbabf998e426aaae34369 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_f8dd154c.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1766 7316UP-1766.WholeExome.RP-1303.bam 25087107391 BAM aligned CPTAC3 f63db56a-cf7f-49d6-b7ae-e112a8716197 16a5d8357e4fba2670e3901e3eb08093 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.DUP_f8dd154c.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1766 6b0b63d6-27fe-4b00-b98f-9797af281bca_wxs_gdc_realn.bam 34195042714 BAM harmonized CPTAC3 63475f5d-5f4d-4ec8-9ba0-25c3097029c8 abfc2bf71b43fa2fd024f9c779f5bc13 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C383391.miRNA-Seq.R.hg38 C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1766-1104799 421ed8c5-aeaa-4370-99c0-80cf131453a2_mirnaseq_gdc_realn.bam 298959459 BAM harmonized CPTAC3 9e2d6b7a-f24b-454d-a429-3f1d0ba3455c cc2bab0c22e41825ba522e1cb4d38f18 {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor"} -C383391.miRNA-Seq.S13_L003_R1.T C383391 GBM miRNA-Seq tumor 7316UP-1108-1104809 210817_UNC31-K00269_0302_AHLCTHBBXY_CGTACG_S13_L003_R1_001.unaln.bam 233137947 BAM S13_L003_R1 unaligned CPTAC3 b1b8898e-a098-4374-b71b-ed0554a4e9b9 7ff277f5e6b519f5687b9a0f360ffed9 {"aliquot_tag": "ALQ_2691e93", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C383391.miRNA-Seq.S28_L002_R1.R C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1766-1104799 210817_UNC31-K00269_0302_AHLCTHBBXY_CTTGTA_S28_L002_R1_001.unaln.bam 254499278 BAM S28_L002_R1 unaligned CPTAC3 05fbc1ab-b459-443c-a7db-0e45167454f8 42808419f3287876e1fbbe088b7d6766 {"aliquot_tag": "ALQ_f59e8371", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C383391.miRNA-Seq.T.hg38 C383391 GBM miRNA-Seq tumor 7316UP-1108-1104809 a2a41043-2045-469e-96fb-c3b847f0e947_mirnaseq_gdc_realn.bam 263453620 BAM harmonized CPTAC3 5fc9a290-d656-4257-af23-7bf7de94806e 10fc80ac302e0ce288d12a1ddf8ff18d {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor"} -C383391.RNA-Seq.chimeric.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.chimeric.gdc_realn.bam 40534685 BAM chimeric harmonized CPTAC3 bf43135f-2c23-4375-beac-54696a80190f 5d8f5a82c786b3922fa0fe82ae220635 {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor"} -C383391.RNA-Seq.chimeric.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.chimeric.gdc_realn.bam 28904609 BAM chimeric harmonized CPTAC3 56e879f5-098d-4695-bc49-52b8b39aecc3 78dc60c9b9778829eefa31c0dc4b3a29 {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor"} -C383391.RNA-Seq.genomic.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.genomic.gdc_realn.bam 9875883138 BAM genomic harmonized CPTAC3 b82c95dc-d7e1-4bfb-9da7-491bfd6d7151 1cd35cf267835c0a0585b261264b3b4f {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor"} -C383391.RNA-Seq.genomic.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.genomic.gdc_realn.bam 9968773736 BAM genomic harmonized CPTAC3 1deaf9de-16fd-4555-b5c4-f32e6a712ae0 cb012cdd47038dfa5b7870bdcbc628d7 {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor"} -C383391.RNA-Seq.S26_L007_R1.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R1_001.fastq.gz 3545435152 FASTQ S26_L007_R1 unaligned CPTAC3 a1cdfb94-8758-4d2b-92bf-db1bac25b7e9 97b9961eb892c507cdddcce58647ee5e {"aliquot_tag": "ALQ_2691e93", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C383391.RNA-Seq.S26_L007_R2.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R2_001.fastq.gz 3726226989 FASTQ S26_L007_R2 unaligned CPTAC3 e25981ec-ac52-4a07-a09e-f82495748135 f5022ed351e414de6244c3b55af62566 {"aliquot_tag": "ALQ_2691e93", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C383391.RNA-Seq.S6_L002_R1.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 3361626903 FASTQ S6_L002_R1 unaligned CPTAC3 67f1d243-6790-4916-8e93-e9712739d6d2 6464b69d7216ae3c9c480b3d15ffe329 {"aliquot_tag": "ALQ_f59e8371", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C383391.RNA-Seq.S6_L002_R2.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 3793927938 FASTQ S6_L002_R2 unaligned CPTAC3 79a1e05d-5544-4bb7-8d1b-0eb7ba887f43 c885a074cf3689694ee4cc000e8e5aad {"aliquot_tag": "ALQ_f59e8371", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C383391.RNA-Seq.transcriptome.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.transcriptome.gdc_realn.bam 10918153358 BAM transcriptome harmonized CPTAC3 9a41e91a-db60-4c09-9473-1b1ab9c80354 73ecdfd6053f5f9c40d7e64b2195edd6 {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor"} -C383391.RNA-Seq.transcriptome.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.transcriptome.gdc_realn.bam 15135652948 BAM transcriptome harmonized CPTAC3 7c7f83a8-638f-4f16-849c-5731f693a351 9b679a9c88471ca42194aec4bea213d6 {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor"} -C383391.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766-1105264 7316UP-1766-1105264.WholeGenome.RP-2158.bam 56126633437 BAM aligned CPTAC3 7894b548-1983-4d54-85b5-1641d3af56d7 c6e855af105c24ad350bddb5a272a24b {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor"} -C383391.WGS.R.hg38 C383391 GBM WGS recurrent_tumor 7316UP-1766-1105264 9898f83f-88c5-4800-b493-492972f33ed4_wgs_gdc_realn.bam 163724138183 BAM harmonized CPTAC3 f5415289-d4cd-4a4d-943f-10e3ce3aa9fb be465c656ccbd21e673dd7468ebb0424 {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor"} -C383391.WXS.N C383391 GBM WXS blood_normal 7316UP-1108-1105272 7316UP-1108-1105272.WholeExome.RP-1303.bam 24745797287 BAM aligned CPTAC3 c0487dd4-37f2-4c32-93b6-0d0de66c547a afbd0aeb14c30296d4c6493f14e4b2fb {"aliquot_tag": "ALQ_6fd1b36f", "gdc_sample_type": "Blood Derived Normal"} -C383391.WXS.N.hg38 C383391 GBM WXS blood_normal 7316UP-1108-1105272 64ed74c9-b20e-45aa-85c1-760c4f44451f_wxs_gdc_realn.bam 33659971750 BAM harmonized CPTAC3 5ddee6c2-988a-4b6a-9594-ffc03d9da680 e9d22f28667ef836ab8facfcd18ca399 {"aliquot_tag": "ALQ_6fd1b36f", "gdc_sample_type": "Blood Derived Normal"} -C383391.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1766-1105264 7316UP-1766-1105264.WholeExome.RP-1303.bam 29360557443 BAM aligned CPTAC3 6dab5b5b-d531-4577-99ae-34db7950f86f 81c59fcd899e2ee779778160b3afc61d {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor"} -C383391.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1766-1105264 9898f83f-88c5-4800-b493-492972f33ed4_wxs_gdc_realn.bam 39967648544 BAM harmonized CPTAC3 b621007c-7a1b-48ee-b428-7fb6164b3cec 306a7e09a3dc526b8ce96178fa137f24 {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor"} -C383391.WXS.T C383391 GBM WXS tumor 7316UP-1108-1105202 7316UP-1108-1105202.WholeExome.RP-1303.bam 27655982134 BAM aligned CPTAC3 49c281c9-1066-4546-828f-5e20879f0238 88fc1d8a859c9730a8b85e90465104d3 {"aliquot_tag": "ALQ_209025a8", "gdc_sample_type": "Primary Tumor"} -C383391.WXS.T.hg38 C383391 GBM WXS tumor 7316UP-1108-1105202 f7d2db47-e553-4569-b883-51d139f98ef5_wxs_gdc_realn.bam 37962672248 BAM harmonized CPTAC3 cff641f8-776b-4b10-8983-71008ed827f4 7e0c404c1e50d0ab862ab9e6e3cc518a {"aliquot_tag": "ALQ_209025a8", "gdc_sample_type": "Primary Tumor"} -C3L-00001.MethArray.Green.A C3L-00001 LUAD Methylation_Array tissue_normal CPT0001590008 203027390118_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 df1ce98e-8ee2-4c56-beb4-0129824b2033 0641f2a152b850b53b2c7cc5dcf34425 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.MethArray.Green.T C3L-00001 LUAD Methylation_Array tumor CPT0001580165 201557560005_R01C01_Grn.idat 13676234 IDAT Green NA CPTAC3 c41ca2cf-b388-443c-9ca6-b51e9db97b45 739e69d1e358d4bdb485a2e1c8cbc531 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor"} -C3L-00001.MethArray.Red.A C3L-00001 LUAD Methylation_Array tissue_normal CPT0001590008 203027390118_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 b5971ca7-ad14-4c3a-9b33-eee83bd40ae3 9e53192a72676c77abb15cd0a508dfbc {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.MethArray.Red.T C3L-00001 LUAD Methylation_Array tumor CPT0001580165 201557560005_R01C01_Red.idat 13676234 IDAT Red NA CPTAC3 68f5b973-91b0-4262-8c51-b89917e3a6cd fe8b80f50ead938d36e2661c60cbb5a3 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor"} -C3L-00001.miRNA-Seq.A.hg38 C3L-00001 LUAD miRNA-Seq tissue_normal CPT0001590005 1f970bbc-0c72-4494-a07c-6614fee73147_mirnaseq_gdc_realn.bam 272125302 BAM harmonized CPTAC3 9e0ff60b-1065-44b7-9a81-f76610b1b320 53251eac83c8e042719ecd49c2bfbe58 {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.miRNA-Seq.S40_L002_R1.T C3L-00001 LUAD miRNA-Seq tumor CPT0001580164 181113_UNC31-K00269_0164_AH23NNBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 198156013 BAM S40_L002_R1 unaligned CPTAC3 7f8959ca-2250-4099-bed2-b85fb4b1fbd2 4eb52417fd4533fe85a5c07c2dcac03d {"aliquot_tag": "ALQ_8ef887a3", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00001.miRNA-Seq.S46_L002_R1.A C3L-00001 LUAD miRNA-Seq tissue_normal CPT0001590005 181108_UNC31-K00269_0163_BH23TVBBXY_TCCCGA_S46_L002_R1_001.unaln.bam 238885562 BAM S46_L002_R1 unaligned CPTAC3 18d260e2-519b-4e6d-b640-7205239ee964 c206ca7bed33f36b085c6d6fbe4a123b {"aliquot_tag": "ALQ_93075334", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.miRNA-Seq.T.hg38 C3L-00001 LUAD miRNA-Seq tumor CPT0001580164 5c89811b-9851-41e7-a0c2-a0e5e3090a54_mirnaseq_gdc_realn.bam 216661805 BAM harmonized CPTAC3 61ec239b-7461-44fb-bdb5-24bfe37dc7bd cca923dc83d2bc6598802a48fa22ca63 {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor"} -C3L-00001.RNA-Seq.chimeric.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.chimeric.gdc_realn.bam 63975785 BAM chimeric harmonized CPTAC3 85013de0-5d4c-40b2-b83d-611fa037ee0a e1af18c3bb4aae36040a8e1fc30c81d2 {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.RNA-Seq.chimeric.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.chimeric.gdc_realn.bam 70180049 BAM chimeric harmonized CPTAC3 7bebe96f-ec5a-4e67-8d0c-9e251ad9c68b 7c924fa5ec507286d56bc32a9d9d4ae2 {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor"} -C3L-00001.RNA-Seq.genomic.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.genomic.gdc_realn.bam 6565001896 BAM genomic harmonized CPTAC3 3776ea90-7e8f-4531-886f-d91fd56407a7 42265ab0abc521564a0f3165f6b1707e {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.RNA-Seq.genomic.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.genomic.gdc_realn.bam 7865654140 BAM genomic harmonized CPTAC3 bb209fc6-e49c-4dbf-aafd-935fae61ac6f 1579e9b7951d18a0b838ddd28765d47e {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor"} -C3L-00001.RNA-Seq.S12_L004_R1.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R1_001.fastq.gz 3170333423 FASTQ S12_L004_R1 unaligned CPTAC3 6f1bf159-5c80-41dc-87c4-593ace9987d6 a4fe58f08f8c0e386d20ef46ffc21158 {"aliquot_tag": "ALQ_93075334", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.RNA-Seq.S12_L004_R2.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R2_001.fastq.gz 3377969387 FASTQ S12_L004_R2 unaligned CPTAC3 a1647619-4448-4ea8-aa7e-6968fd2f61ad 33b752dd8aee17f45a4d3d22681e88ba {"aliquot_tag": "ALQ_93075334", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.RNA-Seq.S4_L006_R1.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 3467940463 FASTQ S4_L006_R1 unaligned CPTAC3 8db05676-b96a-466a-bdbc-71db64e64c08 e603da80da9520f6f8f301fc50a344a3 {"aliquot_tag": "ALQ_8ef887a3", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00001.RNA-Seq.S4_L006_R2.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 3786676689 FASTQ S4_L006_R2 unaligned CPTAC3 593e3888-d805-403e-813d-c10c9a34d539 015da0c7e5c477ca695055587c288e62 {"aliquot_tag": "ALQ_8ef887a3", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00001.RNA-Seq.transcriptome.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.transcriptome.gdc_realn.bam 7891830831 BAM transcriptome harmonized CPTAC3 2253f085-844e-4512-ad3a-190f020bb6fd 9c12d7b15f0fa790224238a87cafba24 {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.RNA-Seq.transcriptome.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.transcriptome.gdc_realn.bam 8019945759 BAM transcriptome harmonized CPTAC3 28435e4b-f1a9-4668-ad9d-48247105f822 0adcce03060eadacfe861cf76a348a81 {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor"} -C3L-00001.WGS.A C3L-00001 LUAD WGS tissue_normal CPT0001590008 CPT0001590008.WholeGenome.RP-1303.bam 59764413161 BAM aligned CPTAC3 34d01163-72b1-4008-8bd7-33380906edff a66d553a599cd431ec3b6108fd4d8464 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.WGS.A.hg38 C3L-00001 LUAD WGS tissue_normal CPT0001590008 51f174e6-1be7-4819-9339-b95193c935bd_wgs_gdc_realn.bam 86803129008 BAM harmonized CPTAC3 7f516c95-70be-4add-9af9-19d6428edd44 5ae2b5f7db2e0ce311cdd5020c3d2d66 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.WGS.N C3L-00001 LUAD WGS blood_normal CPT0000150163 CPT0000150163.WholeGenome.RP-1303.bam 138602354329 BAM aligned CPTAC3 caa607a4-b0c5-4b5d-ba51-1e648a8e264a 42997e95d6df30d25c082c29e826cf6f {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal"} -C3L-00001.WGS.N.hg38 C3L-00001 LUAD WGS blood_normal CPT0000150163 2595f8ca-ef17-4bf0-984d-27caaa8ee608_gdc_realn.bam 202924825766 BAM harmonized CPTAC3 1d301dc5-ebb2-47e0-9a9f-e31ed41b4542 ad13fed3116916005024c89f12992913 {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal"} -C3L-00001.WGS.T C3L-00001 LUAD WGS tumor CPT0001580165 CPT0001580165.WholeGenome.RP-1303.bam 138347401746 BAM aligned CPTAC3 800c4053-2b67-4e66-bb97-474458635c21 20de25c08f2eb037f22fa2ad7379f58f {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor"} -C3L-00001.WGS.T.hg38 C3L-00001 LUAD WGS tumor CPT0001580165 1cc7a20f-b05e-4661-95ec-399b3080a02b_gdc_realn.bam 200258660209 BAM harmonized CPTAC3 b919a0f4-c85d-4fe0-9947-2b8cb9b9a2b4 8bfbc3d69159ab8efe370237b5610e85 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor"} -C3L-00001.WXS.A C3L-00001 LUAD WXS tissue_normal CPT0001590008 CPT0001590008.WholeExome.RP-1303.bam 40403928360 BAM aligned CPTAC3 6b61189d-0f3a-4b51-b988-1f063d107114 07a06c00b92ac282699591656789cf4f {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.WXS.A.hg38 C3L-00001 LUAD WXS tissue_normal CPT0001590008 51f174e6-1be7-4819-9339-b95193c935bd_wxs_gdc_realn.bam 55218252573 BAM harmonized CPTAC3 a4163684-cf9c-466f-ac3f-5a591ce9e9b9 d2634c52fb298bc6f92644c6f5008391 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00001.WXS.N C3L-00001 LUAD WXS blood_normal CPT0000150163 CPT0000150163.WholeExome.RP-1303.bam 27988092058 BAM aligned CPTAC3 f6a3f2f8-657d-48b3-9762-1ec60c50bd93 02b1b0ebbdc2e30306646ac254dc313c {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal"} -C3L-00001.WXS.N.hg38 C3L-00001 LUAD WXS blood_normal CPT0000150163 2595f8ca-ef17-4bf0-984d-27caaa8ee608_gdc_realn.bam 39542030390 BAM harmonized CPTAC3 df589c6d-37e7-4878-9453-ded1a3ca5e17 9fc32e83356b9db8f1ec0cbf202d7891 {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal"} -C3L-00001.WXS.T C3L-00001 LUAD WXS tumor CPT0001580165 CPT0001580165.WholeExome.RP-1303.bam 31774252273 BAM aligned CPTAC3 9048a65c-2312-4cae-bea6-d31a1c53bd39 b763a7bfde97cd1bb53673a2cd48452e {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor"} -C3L-00001.WXS.T.hg38 C3L-00001 LUAD WXS tumor CPT0001580165 1cc7a20f-b05e-4661-95ec-399b3080a02b_gdc_realn.bam 43659332939 BAM harmonized CPTAC3 a0e38199-402a-4ae1-b00d-ec9c67dd51df 537a4ba9f2f23ebb270e63d696ca6819 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor"} -C3L-00004.MethArray.Green.A C3L-00004 CCRCC Methylation_Array tissue_normal CPT0001550013 204930630113_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e5e09660-66b1-40f5-ba1f-110d1e5cb8a9 2c089f69fa120f37bb732a572bfe31fe {"aliquot_tag": "ALQ_a68f2a41", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.MethArray.Green.T C3L-00004 CCRCC Methylation_Array tumor CPT0001540165 201557560049_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fbbafc2d-6792-4fae-bc55-819a05c6ad2a 5d5aca53a23c54b112dff078b399de9c {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor"} -C3L-00004.MethArray.Red.A C3L-00004 CCRCC Methylation_Array tissue_normal CPT0001550013 204930630113_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 65d4ab9d-8975-4cc2-9376-e9d8ba6fa335 f7b77e9a754e9b1b158019342c199dc6 {"aliquot_tag": "ALQ_a68f2a41", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.MethArray.Red.T C3L-00004 CCRCC Methylation_Array tumor CPT0001540165 201557560049_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 6a0992ca-3d2a-4d1a-9368-74b56cfefbda 3d1e9062b0996fb803f76d776abfb9b6 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor"} -C3L-00004.miRNA-Seq.A.hg38 C3L-00004 CCRCC miRNA-Seq tissue_normal CPT0001550006 29c227bb-50a4-4d50-8d6f-52bc55219883_mirnaseq_gdc_realn.bam 219223793 BAM harmonized CPTAC3 1822ab71-6bca-4e5b-b55c-525ed7a78478 6647fd4f5d7d91d52153547ce3215b2b {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.miRNA-Seq.S13_L001_R1.T C3L-00004 CCRCC miRNA-Seq tumor CPT0001540164 181113_UNC31-K00269_0164_AH23NNBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 180028660 BAM S13_L001_R1 unaligned CPTAC3 e80a22fb-6a97-4163-ae09-a275db4464ec c0037661a69dc42a226a4b8acda6a223 {"aliquot_tag": "ALQ_4b086aa2", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00004.miRNA-Seq.S22_L005_R1.A C3L-00004 CCRCC miRNA-Seq tissue_normal CPT0001550006 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L005_R1_001.unaln.bam 194613679 BAM S22_L005_R1 unaligned CPTAC3 7bf6be8f-c202-4f7a-b9e6-556153052645 d1805347b4faaf2b87d8332846d3e341 {"aliquot_tag": "ALQ_cffeef8f", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.miRNA-Seq.T.hg38 C3L-00004 CCRCC miRNA-Seq tumor CPT0001540164 02fc9aea-63e7-4918-b494-82ab3ac41599_mirnaseq_gdc_realn.bam 196798551 BAM harmonized CPTAC3 f4df9261-f178-417c-a95c-b08ed5d5d965 a476b35219ca786fe90d17ad67fa407d {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor"} -C3L-00004.RNA-Seq.chimeric.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.chimeric.gdc_realn.bam 68660391 BAM chimeric harmonized CPTAC3 01b90b29-15d2-482d-8a27-fc3f70432df6 b28a1f8ea44450b0c72fe1f24a357d48 {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.RNA-Seq.chimeric.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.chimeric.gdc_realn.bam 91352854 BAM chimeric harmonized CPTAC3 7154c769-3d34-42b8-857b-5d14bd8ea2b2 e5801a02e63c454e88fd4362dde092df {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor"} -C3L-00004.RNA-Seq.genomic.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.genomic.gdc_realn.bam 8198531197 BAM genomic harmonized CPTAC3 6a829605-540c-4742-a7a5-b270dc137c45 4ed88ed7191ba9f8e14c801c71904ec2 {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.RNA-Seq.genomic.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.genomic.gdc_realn.bam 8003736717 BAM genomic harmonized CPTAC3 d4c152be-e48a-40b9-8b2d-afc1f4e7ca6d b58b740e672ce92e0e26896ed02d3944 {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor"} -C3L-00004.RNA-Seq.S14_L004_R1.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R1_001.fastq.gz 3583768830 FASTQ S14_L004_R1 unaligned CPTAC3 287dfdf2-9db1-4216-bffb-1b0a91d91a18 938ee1cce13b5fb162d745e2728b4a76 {"aliquot_tag": "ALQ_4b086aa2", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00004.RNA-Seq.S14_L004_R2.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R2_001.fastq.gz 4011873670 FASTQ S14_L004_R2 unaligned CPTAC3 b9e72d51-f52d-43b0-99fa-25c184f27a92 82f5aca80e5debf65d53c3ff985cfa2b {"aliquot_tag": "ALQ_4b086aa2", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00004.RNA-Seq.S57_L008_R1.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R1_001.fastq.gz 3956827023 FASTQ S57_L008_R1 unaligned CPTAC3 804bc1fd-f191-4415-985f-7572e367ccbb b645b63047f98ea399ccc89e945ffdb4 {"aliquot_tag": "ALQ_cffeef8f", "sample": "S57", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.RNA-Seq.S57_L008_R2.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R2_001.fastq.gz 4122366105 FASTQ S57_L008_R2 unaligned CPTAC3 eb0369b6-5af2-4066-a2b3-41f4d4a93719 4c3078869f5081425ce645dc23dcaeea {"aliquot_tag": "ALQ_cffeef8f", "sample": "S57", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.RNA-Seq.transcriptome.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.transcriptome.gdc_realn.bam 10571004205 BAM transcriptome harmonized CPTAC3 edd40709-83f2-40ff-a8d5-d5731f062785 97123e89ecc8f647e09f9da38a31af53 {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.RNA-Seq.transcriptome.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.transcriptome.gdc_realn.bam 10413867184 BAM transcriptome harmonized CPTAC3 7057ea6a-7aa4-4472-baad-215642ad7fc1 1bfcab8bb976d6aac1ca0df1a35dc7b2 {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor"} -C3L-00004.WGS.A C3L-00004 CCRCC WGS tissue_normal CPT0001550009 CPT0001550009.WholeGenome.RP-1303.bam 63270315022 BAM aligned CPTAC3 376bb37b-520f-4ac4-a035-1fdeb489fc4e ed48599f4986741b3bd1d47a7f003860 {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.WGS.A.hg38 C3L-00004 CCRCC WGS tissue_normal CPT0001550009 63327ba1-ba31-4984-81a3-725c0d7b2086_wgs_gdc_realn.bam 92499493937 BAM harmonized CPTAC3 fcb42e8c-30bc-48be-9a18-cfbf2af35e0a 7ade6a1855d98e7739d856f2b229ef26 {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.WGS.N C3L-00004 CCRCC WGS blood_normal CPT0000140163 CPT0000140163.WholeGenome.RP-1303.bam 137026519152 BAM aligned CPTAC3 59f284e7-cffa-4891-a76c-60dd8e46a01d c4f2f69bffed177e9412ba8559a37ecf {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00004.WGS.N.hg38 C3L-00004 CCRCC WGS blood_normal CPT0000140163 1561b97d-8c8f-4fe6-a244-06452760074d_gdc_realn.bam 200595183585 BAM harmonized CPTAC3 22a34772-76b0-4cab-af6f-43472bb74199 2e364cc284781a02c3edabbc75ca210e {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00004.WGS.T C3L-00004 CCRCC WGS tumor CPT0001540165 CPT0001540165.WholeGenome.RP-1303.bam 146090178289 BAM aligned CPTAC3 c336c120-966a-4ec0-9fc7-6d5c856bbc22 12e1fcaf3dd836872c2f665d08b37423 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor"} -C3L-00004.WGS.T.hg38 C3L-00004 CCRCC WGS tumor CPT0001540165 82ccdf4e-4527-47ca-8151-7e1248f1da09_gdc_realn.bam 212972511913 BAM harmonized CPTAC3 d3c54309-50b1-4257-8e90-4536dd45efe1 05dd981dd2007ec5b2620381f87205a2 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor"} -C3L-00004.WXS.A C3L-00004 CCRCC WXS tissue_normal CPT0001550009 CPT0001550009.WholeExome.RP-1303.bam 41922704371 BAM aligned CPTAC3 deef0198-312b-4c21-bff0-d761ca79fb71 c27d4b4eb957b298b3bcebeb9b3ab5be {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.WXS.A.hg38 C3L-00004 CCRCC WXS tissue_normal CPT0001550009 63327ba1-ba31-4984-81a3-725c0d7b2086_wxs_gdc_realn.bam 56631971986 BAM harmonized CPTAC3 40f1ab1f-5740-432a-94b2-ea466ec797e3 0a3631d858cfc95b3b11f6d63d4a45a1 {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00004.WXS.N C3L-00004 CCRCC WXS blood_normal CPT0000140163 CPT0000140163.WholeExome.RP-1303.bam 29198662220 BAM aligned CPTAC3 e933d585-96d2-4ab6-89b1-2b542d07fa9e 4501fc3aeaa7c9b7533dcf9d8c9970ec {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00004.WXS.N.hg38 C3L-00004 CCRCC WXS blood_normal CPT0000140163 1561b97d-8c8f-4fe6-a244-06452760074d_gdc_realn.bam 40586776249 BAM harmonized CPTAC3 1dee4e84-b617-43a2-add1-c68c5e36bcec eac1811599dfed7cfe4f5abeb893cb66 {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00004.WXS.T C3L-00004 CCRCC WXS tumor CPT0001540165 CPT0001540165.WholeExome.RP-1303.bam 39445446486 BAM aligned CPTAC3 baaf9523-3d3c-4c8a-979c-af8b86a1bc6d 98014f0fd20d3fffe8d13d46a275c4e9 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor"} -C3L-00004.WXS.T.hg38 C3L-00004 CCRCC WXS tumor CPT0001540165 82ccdf4e-4527-47ca-8151-7e1248f1da09_gdc_realn.bam 53186219044 BAM harmonized CPTAC3 524d1cea-62cd-483c-8137-19450faf72b6 dbe4a9f30bfc2a0efe8ef710d074230c {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor"} -C3L-00006.MethArray.Green.T C3L-00006 UCEC Methylation_Array tumor CPT0001460007 201557540007_R08C01_Grn.idat 13676222 IDAT Green NA CPTAC3 1d7cb5a9-7648-437c-9b6c-12dfca48ca12 d40abf9cd21a7a110f23edd4afd67edd {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor"} -C3L-00006.MethArray.Red.T C3L-00006 UCEC Methylation_Array tumor CPT0001460007 201557540007_R08C01_Red.idat 13676222 IDAT Red NA CPTAC3 31d10d0d-1dcc-4897-a879-b4510b5ebd38 8b8fc66a49e50295807b36a685687bad {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor"} -C3L-00006.miRNA-Seq.A.hg38 C3L-00006 UCEC miRNA-Seq tissue_normal CPT0001470006 0978a8f5-c49c-44f0-a311-d4f89acd522e_mirnaseq_gdc_realn.bam 281830092 BAM harmonized CPTAC3 9bda888e-b50e-43c7-8961-2fbff09d71e8 ff41b26dae21aad4557f6f14a62282c3 {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.miRNA-Seq.S16_L006_R1.A C3L-00006 UCEC miRNA-Seq tissue_normal CPT0001470006 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L006_R1_001.unaln.bam 246964533 BAM S16_L006_R1 unaligned CPTAC3 837d8832-73b6-4fa3-99c8-f8d4d7a5a3c2 b9f889d11c718b4bb4307523eafaaa9e {"aliquot_tag": "ALQ_7e626f4a", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.miRNA-Seq.S39_L002_R1.T C3L-00006 UCEC miRNA-Seq tumor CPT0001460164 181113_UNC31-K00269_0164_AH23NNBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 186578806 BAM S39_L002_R1 unaligned CPTAC3 d0acbabd-f97d-4d5c-adec-b539edded0de 643223c47a7d53f453a0f59aa97470af {"aliquot_tag": "ALQ_fa94ea67", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00006.miRNA-Seq.T.hg38 C3L-00006 UCEC miRNA-Seq tumor CPT0001460164 fe67dd2b-fd0a-4918-b7f3-ebf2f10f6063_mirnaseq_gdc_realn.bam 202747726 BAM harmonized CPTAC3 67c467d3-fe50-4e94-aa91-4b4439224362 5d0c0966bb46ffa66b03aaf6e5730dbb {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.chimeric.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.chimeric.gdc_realn.bam 152631450 BAM chimeric harmonized CPTAC3 8c2f844a-76b3-4905-becd-e89798735152 d94abf26d37b1347a7268509f8a65fc2 {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.RNA-Seq.chimeric.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.chimeric.gdc_realn.bam 131557006 BAM chimeric harmonized CPTAC3 6f0b7990-0d6b-4e71-b033-51c7ae0e222c 8fbfb865f508c1a950cae4c95f02e799 {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.chimeric.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.chimeric.gdc_realn.bam 166551731 BAM chimeric harmonized CPTAC3 2da30e2a-eb43-4dfd-9e10-98100fcdc954 37522f6bccf6cd159e45a8b9928516d9 {"aliquot_tag": "ALQ_732bb609", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.genomic.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.genomic.gdc_realn.bam 7664521391 BAM genomic harmonized CPTAC3 a60f01e3-f87e-4fb1-af2d-be6f707a1583 16f7371ba893134ffa891c5f47a7f1cf {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.RNA-Seq.genomic.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.genomic.gdc_realn.bam 7863180104 BAM genomic harmonized CPTAC3 32b121fd-d4b3-4a4d-85c8-8070f950314d e42687975b40fee286dc7666de7734f6 {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.genomic.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.genomic.gdc_realn.bam 8961910969 BAM genomic harmonized CPTAC3 0c60f4e6-2c87-4578-b073-886f8e7d6f28 26059fbea54352c8affe719d06b9f843 {"aliquot_tag": "ALQ_732bb609", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.S17_L005_R1.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R1_001.fastq.gz 3875867464 FASTQ S17_L005_R1 unaligned CPTAC3 8a1efc47-1c29-417f-a425-cdbd09565dcb 220251611f5168663d5273deffa65203 {"aliquot_tag": "ALQ_fa94ea67", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.S17_L005_R2.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R2_001.fastq.gz 4295485553 FASTQ S17_L005_R2 unaligned CPTAC3 8c3fe9b7-7acd-4867-8d9c-a8e5d1516eda e651d3e28763687d67f1427d288681d1 {"aliquot_tag": "ALQ_fa94ea67", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.S39_L007_R1.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R1_001.fastq.gz 3462455668 FASTQ S39_L007_R1 unaligned CPTAC3 caea5e0c-f3be-4db4-8837-c3f5d89ac4a6 550f9dad913fb3cd970519800eb930d0 {"aliquot_tag": "ALQ_7e626f4a", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.RNA-Seq.S39_L007_R2.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R2_001.fastq.gz 3728425524 FASTQ S39_L007_R2 unaligned CPTAC3 d5b2b761-e82a-4829-8aab-a78d87cde2a1 c1a3c67d59e19c0875b3d75400dd8b61 {"aliquot_tag": "ALQ_7e626f4a", "sample": "S39", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.RNA-Seq.S65_R1.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R1_001.fastq.gz 5552900008 FASTQ S65_R1 unaligned CPTAC3 cdee2b7c-feac-42d4-9138-3f79952769ea 6233ac946dc6a8cb34fb65b817f41489 {"aliquot_tag": "ALQ_732bb609", "sample": "S65", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.S65_R2.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R2_001.fastq.gz 5759284017 FASTQ S65_R2 unaligned CPTAC3 66f24dcc-d4fc-482a-bef2-8252fc3537ca a6520e0879b241ef6e06f85b52cfba52 {"aliquot_tag": "ALQ_732bb609", "sample": "S65", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.transcriptome.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.transcriptome.gdc_realn.bam 8054263551 BAM transcriptome harmonized CPTAC3 1bf96578-4352-48ca-b131-c77f4095744a 988984a1394d31e9fe747e30884d84d3 {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.RNA-Seq.transcriptome.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.transcriptome.gdc_realn.bam 11243039828 BAM transcriptome harmonized CPTAC3 a522211c-1a38-477a-a725-e6b1bfa39e9f cef80bad497b0393e7b05e8fb6429f8a {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor"} -C3L-00006.RNA-Seq.transcriptome.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.transcriptome.gdc_realn.bam 5602032600 BAM transcriptome harmonized CPTAC3 239b6173-9be4-4d4a-aaa7-f61d4b25759e 714c6523c1a163b9a20d149226532f79 {"aliquot_tag": "ALQ_732bb609", "gdc_sample_type": "Primary Tumor"} -C3L-00006.WGS.A C3L-00006 UCEC WGS tissue_normal CPT0001470009 CPT0001470009.WholeGenome.RP-1303.bam 60673545385 BAM aligned CPTAC3 79bc45b0-4936-49db-b54d-462280db83e2 9d2bb378f89f0d21859762f7d6f8fb16 {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.WGS.A.hg38 C3L-00006 UCEC WGS tissue_normal CPT0001470009 cb385c27-1157-4877-b1ff-a06076715303_wgs_gdc_realn.bam 88996659007 BAM harmonized CPTAC3 8c74f9dc-e295-4db2-bc29-c25e896d7947 4bf38f3505d1860bdd14a20ad4baadef {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.WGS.N C3L-00006 UCEC WGS blood_normal CPT0000120163 CPT0000120163.WholeGenome.RP-1303.bam 151985198519 BAM aligned CPTAC3 14c0cb14-71e4-4f26-89f1-349ce26f0bf9 fe6d49f2c01725954df1fe15016c214a {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal"} -C3L-00006.WGS.N.hg38 C3L-00006 UCEC WGS blood_normal CPT0000120163 92b5e534-6cb0-43eb-8147-ce7d18526f5e_gdc_realn.bam 220869345161 BAM harmonized CPTAC3 9f29ebe1-de5d-47a8-a54d-d1e8441409c6 33700ef12c40c7a58d4703043fcb0669 {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal"} -C3L-00006.WGS.T C3L-00006 UCEC WGS tumor CPT0001460007 CPT0001460007.WholeGenome.RP-1303.bam 172574887163 BAM aligned CPTAC3 d7d6b810-7183-4cd3-8847-8794ec578fb9 8afb6a100ad07d5d8f6a53e13d16a919 {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor"} -C3L-00006.WGS.T.hg38 C3L-00006 UCEC WGS tumor CPT0001460007 d9975c5f-288d-417d-bdb3-f490d9a36401_gdc_realn.bam 252294227835 BAM harmonized CPTAC3 457f2c4d-ddf3-416e-bb50-b112eede02d5 5e2d7c20539c37862e35bc5504fc0741 {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor"} -C3L-00006.WXS.A C3L-00006 UCEC WXS tissue_normal CPT0001470009 CPT0001470009.WholeExome.RP-1303.bam 31416159484 BAM aligned CPTAC3 21602f93-05c5-4640-9180-f06adf97a7db 6f3a4f83de7626b9b54c37231e3b7a9b {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.WXS.A.hg38 C3L-00006 UCEC WXS tissue_normal CPT0001470009 cb385c27-1157-4877-b1ff-a06076715303_wxs_gdc_realn.bam 43851360793 BAM harmonized CPTAC3 8413d264-73bd-4c8a-a88e-5fe9869fe9ea 343ebab28bdfea6ddc645057c6975a37 {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00006.WXS.N C3L-00006 UCEC WXS blood_normal CPT0000120163 CPT0000120163.WholeExome.RP-1303.bam 34319355475 BAM aligned CPTAC3 cc3a2843-4c09-4270-a0be-62a0dfccce7f 6db1db1d9fa6cf47b9f89d86a2877015 {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal"} -C3L-00006.WXS.N.hg38 C3L-00006 UCEC WXS blood_normal CPT0000120163 92b5e534-6cb0-43eb-8147-ce7d18526f5e_gdc_realn.bam 47718784405 BAM harmonized CPTAC3 53dbb4d6-ce9d-4145-a33a-0c4d67e655df 1d7f719218ce0fb588d9a70e3d82a091 {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal"} -C3L-00006.WXS.T C3L-00006 UCEC WXS tumor CPT0001460007 CPT0001460007.WholeExome.RP-1303.bam 33843236954 BAM aligned CPTAC3 b821093d-2551-4327-96d5-07bc91c6d8aa 2ff4d23084057ef0a6aadedaf00e9bea {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor"} -C3L-00006.WXS.T.hg38 C3L-00006 UCEC WXS tumor CPT0001460007 d9975c5f-288d-417d-bdb3-f490d9a36401_gdc_realn.bam 46442577649 BAM harmonized CPTAC3 96c07fe5-d530-4c9b-92ce-49408feacb2c 6e3985e72d7457a439eb722ab72e5d42 {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor"} -C3L-00008.MethArray.Green.T C3L-00008 UCEC Methylation_Array tumor CPT0001300005 201557560049_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3b08c3db-8efb-4abe-a709-ab3195b5977f 0f184f200eb2844e0773317d23ebf783 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor"} -C3L-00008.MethArray.Red.T C3L-00008 UCEC Methylation_Array tumor CPT0001300005 201557560049_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 b37d8198-f27a-4562-a968-74df268a53c8 5f21a7c05a2b894500b9e506c20cab0d {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor"} -C3L-00008.miRNA-Seq.S7_L001_R1.T C3L-00008 UCEC miRNA-Seq tumor CPT0001300164 181113_UNC31-K00269_0164_AH23NNBBXY_CACGAT_S7_L001_R1_001.unaln.bam 229697943 BAM S7_L001_R1 unaligned CPTAC3 6cbb3340-95dc-4d9d-8fd1-275534f4750f 454ede5d467756fb7508e10f3550ef8d {"aliquot_tag": "ALQ_68d12f7f", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00008.miRNA-Seq.T.hg38 C3L-00008 UCEC miRNA-Seq tumor CPT0001300164 5ae6dc75-0ab0-4f22-bfde-8bdfcd09fe6c_mirnaseq_gdc_realn.bam 252462534 BAM harmonized CPTAC3 07c7f8c4-85be-4fde-b51b-5dea44a9204a 7fe1ec4b4e079f99fb0fdf50ea64d0da {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor"} -C3L-00008.RNA-Seq.chimeric.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.chimeric.gdc_realn.bam 91709053 BAM chimeric harmonized CPTAC3 1cfa6fb9-2c16-4cbb-8876-d4b3c383d4d1 b3bbaf1f96c1a955632bbc86853eedf6 {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor"} -C3L-00008.RNA-Seq.genomic.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.genomic.gdc_realn.bam 8027989531 BAM genomic harmonized CPTAC3 00f51241-f59f-471f-a3e9-a833ec21ecd6 b667aaf9b59d2f5eeb2782f11d07f98f {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor"} -C3L-00008.RNA-Seq.S22_L007_R1.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R1_001.fastq.gz 3737217002 FASTQ S22_L007_R1 unaligned CPTAC3 555725e8-cba5-4676-9b0a-80100cbf9f47 05fe45687d115a7f053b31ece92174db {"aliquot_tag": "ALQ_68d12f7f", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00008.RNA-Seq.S22_L007_R2.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R2_001.fastq.gz 4246440834 FASTQ S22_L007_R2 unaligned CPTAC3 15235b12-b67a-4678-acc4-ed03d642bd5e c582fc995be2c3e9b3b93c65b025e917 {"aliquot_tag": "ALQ_68d12f7f", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00008.RNA-Seq.transcriptome.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.transcriptome.gdc_realn.bam 12876827464 BAM transcriptome harmonized CPTAC3 b385f3d1-700b-4f49-887f-79f651fc3662 8a2e755af8a7d0f99a7c35ac910e4c56 {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor"} -C3L-00008.WGS.N C3L-00008 UCEC WGS blood_normal CPT0000080163 CPT0000080163.WholeGenome.RP-1303.bam 140546547792 BAM aligned CPTAC3 65f1564f-5dd7-4fc5-ae7c-8522602435d9 c71568df169ce9daf86c6f148bfc9352 {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal"} -C3L-00008.WGS.N.hg38 C3L-00008 UCEC WGS blood_normal CPT0000080163 243bfb3c-d06b-4de5-a6c3-7fa7e2c5fb74_gdc_realn.bam 204714582211 BAM harmonized CPTAC3 846bf455-89b4-4840-b113-e529ffa13277 1df7341fbedeaec7cfd70438deb6107f {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal"} -C3L-00008.WGS.T C3L-00008 UCEC WGS tumor CPT0001300005 CPT0001300005.WholeGenome.RP-1303.bam 137189802725 BAM aligned CPTAC3 bcdaf5a3-d765-47d5-9ff5-fcaf48ebbfd1 26ada53c0c32ae4845ed63e7e1fde360 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor"} -C3L-00008.WGS.T.hg38 C3L-00008 UCEC WGS tumor CPT0001300005 f6924a26-a14f-45a3-b4bd-7a4592d34065_gdc_realn.bam 200107040765 BAM harmonized CPTAC3 1c0e0f84-4caf-4493-9b2f-8f5f9ef9231b ce34785301652aed694c42c38de87978 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor"} -C3L-00008.WXS.N C3L-00008 UCEC WXS blood_normal CPT0000080163 CPT0000080163.WholeExome.RP-1303.bam 28304294001 BAM aligned CPTAC3 185b6084-2a62-4469-8aa2-86a4e8601300 b25e096fd14c31312d15448370949afe {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal"} -C3L-00008.WXS.N.hg38 C3L-00008 UCEC WXS blood_normal CPT0000080163 243bfb3c-d06b-4de5-a6c3-7fa7e2c5fb74_gdc_realn.bam 39779821401 BAM harmonized CPTAC3 90257622-6bcc-43e7-a04f-f7397975d038 1961e136cd00d32b1554f5094a025513 {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal"} -C3L-00008.WXS.T C3L-00008 UCEC WXS tumor CPT0001300005 CPT0001300005.WholeExome.RP-1303.bam 29714332638 BAM aligned CPTAC3 d38806cb-be68-4219-ac60-2381e2ce6d0f eef2af6a9d28fbee37b490a19c996fce {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor"} -C3L-00008.WXS.T.hg38 C3L-00008 UCEC WXS tumor CPT0001300005 f6924a26-a14f-45a3-b4bd-7a4592d34065_gdc_realn.bam 40349955110 BAM harmonized CPTAC3 4501f315-bf8f-4611-821a-797ef180e25b e41bf35e915511a629b0ab1240aa9d61 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor"} -C3L-00009.MethArray.Green.A C3L-00009 LUAD Methylation_Array tissue_normal CPT0001390009 203027390073_R08C01_Grn.idat 13676219 IDAT Green NA CPTAC3 997008dc-c32f-4744-b4f9-ae686e57d0ad 0a6aabbe00835a07114f5fbd49dfbc5f {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.MethArray.Green.T C3L-00009 LUAD Methylation_Array tumor CPT0001380005 202176290116_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c591d380-c82b-45dd-b809-af2d9214e847 91354521ade29959d797f9269cf17497 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor"} -C3L-00009.MethArray.Red.A C3L-00009 LUAD Methylation_Array tissue_normal CPT0001390009 203027390073_R08C01_Red.idat 13676219 IDAT Red NA CPTAC3 284f40cf-9af0-4089-ac56-984d35595355 293b56b936430b8cf372124f8fe679c1 {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.MethArray.Red.T C3L-00009 LUAD Methylation_Array tumor CPT0001380005 202176290116_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 e1c17f35-722e-4825-85d8-c6e5b1a8efa3 c5bd486abed09f8fdbd10b92de68f00a {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor"} -C3L-00009.miRNA-Seq.A.hg38 C3L-00009 LUAD miRNA-Seq tissue_normal CPT0001390013 df939cc8-fa38-4599-89b6-4c7e1ec9ccd5_mirnaseq_gdc_realn.bam 294110704 BAM harmonized CPTAC3 7df12822-c7b2-4b5e-9569-13052d7412a2 158483d66e0646b21c0a2502b2dda98c {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.miRNA-Seq.S1_L006_R1.A C3L-00009 LUAD miRNA-Seq tissue_normal CPT0001390013 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L006_R1_001.unaln.bam 270786454 BAM S1_L006_R1 unaligned CPTAC3 338a6eff-c4b9-48d6-94bb-0c7d70d8d538 f1c082e2910a8ac30b64f8d32a6e8395 {"aliquot_tag": "ALQ_b526245d", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.miRNA-Seq.S9_L001_R1.T C3L-00009 LUAD miRNA-Seq tumor CPT0001380164 181113_UNC31-K00269_0164_AH23NNBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 213059140 BAM S9_L001_R1 unaligned CPTAC3 211df8dd-c9f1-491c-8b4b-b7f045904121 4a429ffadac12451c1de3281a5a0e0ea {"aliquot_tag": "ALQ_58a164be", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00009.miRNA-Seq.T.hg38 C3L-00009 LUAD miRNA-Seq tumor CPT0001380164 296a7602-6d26-4bde-80aa-b3d2002dfe9b_mirnaseq_gdc_realn.bam 231050217 BAM harmonized CPTAC3 fc1d256a-776e-4b68-b8ad-92e9e7d73a68 c33a273b62862dcfd24370858a1c7161 {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor"} -C3L-00009.RNA-Seq.chimeric.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.chimeric.gdc_realn.bam 123702031 BAM chimeric harmonized CPTAC3 6ac290fa-5404-4c83-bfff-7c3509af9d60 7306acabc5d8a8019615e2c6e7c352d3 {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.RNA-Seq.chimeric.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.chimeric.gdc_realn.bam 76255951 BAM chimeric harmonized CPTAC3 7e933af3-e1c7-4825-bcba-9826a3124890 28dacd861e41352938a1fd3cc8a57478 {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor"} -C3L-00009.RNA-Seq.genomic.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.genomic.gdc_realn.bam 9297385735 BAM genomic harmonized CPTAC3 0960ebb9-18b2-4a68-9690-cc60abb4cc9c 88d2f7b9ab6bcdd4e4ef45f1408ccd34 {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.RNA-Seq.genomic.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.genomic.gdc_realn.bam 8563651123 BAM genomic harmonized CPTAC3 50fd5e8a-0e34-483d-9596-34ce0b2467e9 22209ed390b94e16d24eb557c5111f59 {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor"} -C3L-00009.RNA-Seq.S23_L007_R1.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R1_001.fastq.gz 4042964948 FASTQ S23_L007_R1 unaligned CPTAC3 3b80e84e-5031-4d2c-b05d-d4cbb0559a37 4c44c82a1ec01a0ca194e9ab54bcafa1 {"aliquot_tag": "ALQ_58a164be", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00009.RNA-Seq.S23_L007_R2.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R2_001.fastq.gz 4378806570 FASTQ S23_L007_R2 unaligned CPTAC3 5b06320e-6066-4ff2-a03f-dc2382327b61 187d9e60c600625f71f07790835a211d {"aliquot_tag": "ALQ_58a164be", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00009.RNA-Seq.S8_L003_R1.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R1_001.fastq.gz 4585414783 FASTQ S8_L003_R1 unaligned CPTAC3 efaa698c-4015-4478-80ae-f13272b9adc7 583dfe6563a36065ef2bfc386888e974 {"aliquot_tag": "ALQ_b526245d", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.RNA-Seq.S8_L003_R2.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R2_001.fastq.gz 4422468276 FASTQ S8_L003_R2 unaligned CPTAC3 cb333933-3aec-4350-b5ea-ec92a896c339 95ed5fb2995fefbc7e0b69a6b25525d4 {"aliquot_tag": "ALQ_b526245d", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.RNA-Seq.transcriptome.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.transcriptome.gdc_realn.bam 10819981592 BAM transcriptome harmonized CPTAC3 8279d729-f50f-4ea4-84c5-880791ad2df0 b89b349c175fe91ca59cc1d74164d2ef {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.RNA-Seq.transcriptome.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.transcriptome.gdc_realn.bam 11450323150 BAM transcriptome harmonized CPTAC3 4acbd5af-996f-4803-ad69-a408baae5a74 6b1fe457f98fb844e93d6e1cfa0222eb {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor"} -C3L-00009.WGS.A C3L-00009 LUAD WGS tissue_normal CPT0001390009 CPT0001390009.WholeGenome.RP-1303.bam 61674000927 BAM aligned CPTAC3 920307a7-8475-4380-98e6-5418204783b7 56dc82e1b85294761b2b6d2281a1aede {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.WGS.A.hg38 C3L-00009 LUAD WGS tissue_normal CPT0001390009 a1e4e390-bc4b-4cfa-9c0d-8070c50822d2_wgs_gdc_realn.bam 93370190488 BAM harmonized CPTAC3 eaebf3df-300a-43bc-8463-8471604a263b c1f79921f1401309ce5da5b2b0079f35 {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.WGS.N C3L-00009 LUAD WGS blood_normal CPT0000100163 CPT0000100163.WholeGenome.RP-1303.bam 67171233693 BAM aligned CPTAC3 b9d67ad5-b0bd-4f65-9c90-7a1ad9cef2be 57c04a7b536e181eb3ba5435ca825eb7 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal"} -C3L-00009.WGS.N.hg38 C3L-00009 LUAD WGS blood_normal CPT0000100163 0d13c28d-fc75-4de2-9890-036fdd5dab0f_gdc_realn.bam 99973734904 BAM harmonized CPTAC3 8a906d7e-9577-4d0e-a546-f1eff1300fd8 f6a8b55497bffcac916db08d00ef5353 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal"} -C3L-00009.WGS.T C3L-00009 LUAD WGS tumor CPT0001380005 CPT0001380005.WholeGenome.RP-1303.bam 64269200300 BAM aligned CPTAC3 a5f78b33-045b-41a0-8530-a61d42c99fa1 7186c41332111f4514d0ba01a0fbc4e5 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor"} -C3L-00009.WGS.T.hg38 C3L-00009 LUAD WGS tumor CPT0001380005 2889a82c-e8b3-475e-9285-1e103003debb_gdc_realn.bam 96101101945 BAM harmonized CPTAC3 bcfd36b4-5001-4ec8-9eae-49196998045a b720c7cdc6878138ffbbfd8f86b4d3c2 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor"} -C3L-00009.WXS.A C3L-00009 LUAD WXS tissue_normal CPT0001390009 CPT0001390009.WholeExome.RP-1303.bam 33466557543 BAM aligned CPTAC3 8460e8b2-cca7-43fc-958e-708d638d7488 f866116e34a2469bd5d319a590bf527b {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.WXS.A.hg38 C3L-00009 LUAD WXS tissue_normal CPT0001390009 a1e4e390-bc4b-4cfa-9c0d-8070c50822d2_wxs_gdc_realn.bam 45083741987 BAM harmonized CPTAC3 794e4ba8-ea79-4fc4-b80d-b911e017d7d0 51754a0cb016006420aca5583b85c4e3 {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00009.WXS.N C3L-00009 LUAD WXS blood_normal CPT0000100163 CPT0000100163.WholeExome.RP-1303.bam 43728422006 BAM aligned CPTAC3 99bca056-fa86-4225-b692-f0ad5489ccad 895d96d7606c9483338cff86493595e9 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal"} -C3L-00009.WXS.N.hg38 C3L-00009 LUAD WXS blood_normal CPT0000100163 0d13c28d-fc75-4de2-9890-036fdd5dab0f_gdc_realn.bam 59795676584 BAM harmonized CPTAC3 34f2e628-bdf8-4762-8c67-cd5ae09a1d46 9a1cd1add2ca3931b4fe45e10a09ddd2 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal"} -C3L-00009.WXS.T C3L-00009 LUAD WXS tumor CPT0001380005 CPT0001380005.WholeExome.RP-1303.bam 29973586790 BAM aligned CPTAC3 a5f29984-5472-4d7b-b65c-d357260366d5 f572ee1dd539002dadbc269515cbfd40 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor"} -C3L-00009.WXS.T.hg38 C3L-00009 LUAD WXS tumor CPT0001380005 2889a82c-e8b3-475e-9285-1e103003debb_gdc_realn.bam 40869302911 BAM harmonized CPTAC3 8cc90cf4-2598-4a6c-b064-5670df7d2545 016a7579deccbba0ae9dd615d22e6683 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor"} -C3L-00010.MethArray.Green.A C3L-00010 CCRCC Methylation_Array tissue_normal CPT0001230014 204930630086_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9391225e-8665-428a-9ca3-9c831610cc45 d7142bb9335d910adecbaec98e95bc49 {"aliquot_tag": "ALQ_aaae7afa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.MethArray.Green.T C3L-00010 CCRCC Methylation_Array tumor CPT0001220165 201557560050_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 fbaed5d4-e5d9-4f86-a4c9-4216eba5fed8 8815a5b31d8b683b620b82114d12e022 {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor"} -C3L-00010.MethArray.Red.A C3L-00010 CCRCC Methylation_Array tissue_normal CPT0001230014 204930630086_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 252efb65-ebcc-4ae4-a271-11d9a3c70263 3de4ccefcbb5ded66a95ad61f26717f9 {"aliquot_tag": "ALQ_aaae7afa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.MethArray.Red.T C3L-00010 CCRCC Methylation_Array tumor CPT0001220165 201557560050_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 59b116f3-8cc8-42f5-b05c-b4ae5e98f452 b9f8dcdcfa64e3d25627e5c84a786bf7 {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor"} -C3L-00010.miRNA-Seq.A.hg38 C3L-00010 CCRCC miRNA-Seq tissue_normal CPT0001230006 87d459d7-11e8-4472-89ea-80933a608d6d_mirnaseq_gdc_realn.bam 196072447 BAM harmonized CPTAC3 2ca87fc2-2c12-4502-b5d1-a52443b1597a 077ba4b78085c307fac03a9a3e8586e0 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.miRNA-Seq.S23_L005_R1.A C3L-00010 CCRCC miRNA-Seq tissue_normal CPT0001230006 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L005_R1_001.unaln.bam 175083377 BAM S23_L005_R1 unaligned CPTAC3 c09d03ea-588b-40d4-bf75-3e427af44a2d 6d16f308ea9708c12bd67e1988864621 {"aliquot_tag": "ALQ_5dbb2a97", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.miRNA-Seq.S6_L001_R1.T C3L-00010 CCRCC miRNA-Seq tumor CPT0001220164 181113_UNC31-K00269_0164_AH23NNBBXY_CACCGG_S6_L001_R1_001.unaln.bam 212450833 BAM S6_L001_R1 unaligned CPTAC3 0d717e4f-0134-45fa-81ac-9e2a62643fcd 0a8e1d0dd1899b3858bf13be69a9ff06 {"aliquot_tag": "ALQ_d94dafba", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00010.miRNA-Seq.T.hg38 C3L-00010 CCRCC miRNA-Seq tumor CPT0001220164 a80f5793-7cd3-41dd-a968-c42680d1c27e_mirnaseq_gdc_realn.bam 233378024 BAM harmonized CPTAC3 ad839ba7-ac05-41a7-a0f8-040f27cc69c9 0d7cd443c8e85ca9af19463d6d8311e9 {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor"} -C3L-00010.RNA-Seq.chimeric.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.chimeric.gdc_realn.bam 69063375 BAM chimeric harmonized CPTAC3 3ba03655-73b1-41db-b467-9026bc7c0041 4c13738a5da4d3f830206f1477f39e37 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.RNA-Seq.chimeric.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.chimeric.gdc_realn.bam 123920973 BAM chimeric harmonized CPTAC3 f94a9111-d42e-47fd-be95-94bce16d4864 65edf98cbfc05cb8efac5e3d9eb113cf {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor"} -C3L-00010.RNA-Seq.genomic.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.genomic.gdc_realn.bam 8429928591 BAM genomic harmonized CPTAC3 19c437b4-f1c4-483a-a7f6-d147a72f6b12 48abd0fb2c13728ee7ff05e11debf571 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.RNA-Seq.genomic.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.genomic.gdc_realn.bam 9473523842 BAM genomic harmonized CPTAC3 5a0b3885-1bff-415f-aad8-1741d0d29d44 e9dbea8afe32bff1ea15409c96847821 {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor"} -C3L-00010.RNA-Seq.S20_L006_R1.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R1_001.fastq.gz 4528605062 FASTQ S20_L006_R1 unaligned CPTAC3 15ae9b4c-fdc6-4698-b6cc-36a13a5b418f d72bd8978738fc9b51e9221c119b6073 {"aliquot_tag": "ALQ_d94dafba", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00010.RNA-Seq.S20_L006_R2.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R2_001.fastq.gz 4949848179 FASTQ S20_L006_R2 unaligned CPTAC3 f02d442c-e43b-47a5-aac4-f2e422e24927 e0145074be56a89ad9575d00a012db49 {"aliquot_tag": "ALQ_d94dafba", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00010.RNA-Seq.S32_L006_R1.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R1_001.fastq.gz 4362594256 FASTQ S32_L006_R1 unaligned CPTAC3 d7dc0a9b-5d44-494e-89b2-0bf8591cef68 717ee4c5c48244b65f2b68bfa9e1b8b1 {"aliquot_tag": "ALQ_5dbb2a97", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.RNA-Seq.S32_L006_R2.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R2_001.fastq.gz 4773363521 FASTQ S32_L006_R2 unaligned CPTAC3 35d3cc70-0727-46c0-8146-3c51ae013279 9c7e511ba27dbd6ba6c25ad4241a1009 {"aliquot_tag": "ALQ_5dbb2a97", "sample": "S32", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.RNA-Seq.transcriptome.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.transcriptome.gdc_realn.bam 11728815747 BAM transcriptome harmonized CPTAC3 30c7bf3a-6965-4f13-85a1-f9aa263a4f31 98eb4b5ce138ede5c975bf52cb5cc8f2 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.RNA-Seq.transcriptome.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.transcriptome.gdc_realn.bam 12871973727 BAM transcriptome harmonized CPTAC3 ebc24c17-4d8c-4057-b632-ce5357e00a43 776450c35940e3b9c335f7ded10c63c5 {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor"} -C3L-00010.WGS.A C3L-00010 CCRCC WGS tissue_normal CPT0001230009 CPT0001230009.WholeGenome.RP-1303.bam 66170860688 BAM aligned CPTAC3 d6b039cb-4b4a-406d-ab6b-cb1f465c86b0 6c684546dd013110cc3cb459212e9f4b {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.WGS.A.hg38 C3L-00010 CCRCC WGS tissue_normal CPT0001230009 7164a927-f35a-48c9-ba0c-e4904b529ee8_wgs_gdc_realn.bam 97258598016 BAM harmonized CPTAC3 cc565e7b-6c80-4453-b6cd-1a92da1deebf 58f17cbf9c34ef84da724d9487ad9692 {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.WGS.N C3L-00010 CCRCC WGS blood_normal CPT0000060163 CPT0000060163.WholeGenome.RP-1303.bam 136842292513 BAM aligned CPTAC3 78d4debc-1fc1-4cb4-8f59-0a5bd2d8b36e 1c6042637351027b5dd1e4040ab1e02a {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal"} -C3L-00010.WGS.N.hg38 C3L-00010 CCRCC WGS blood_normal CPT0000060163 5fc376df-4539-47ef-9749-44d36230a941_gdc_realn.bam 201653726943 BAM harmonized CPTAC3 2c1805ba-8194-46a9-8862-15685b11a712 90b42ad469297f51368d7155c37f3f4b {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal"} -C3L-00010.WGS.T C3L-00010 CCRCC WGS tumor CPT0001220165 CPT0001220165.WholeGenome.RP-1303.bam 142012054480 BAM aligned CPTAC3 25cb4189-1b2f-4793-b52b-ec96c35567ca fff209b696e382b4d9b223576a68387b {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor"} -C3L-00010.WGS.T.hg38 C3L-00010 CCRCC WGS tumor CPT0001220165 7a2e2088-9a18-4694-a4ca-f688ebd5331f_gdc_realn.bam 208042756639 BAM harmonized CPTAC3 defd1a75-47c4-48d2-ace0-fced371c4933 da3897b30056b7e7959baa6b8126980b {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor"} -C3L-00010.WXS.A C3L-00010 CCRCC WXS tissue_normal CPT0001230009 CPT0001230009.WholeExome.RP-1303.bam 36613162203 BAM aligned CPTAC3 f46792ba-7c62-4fc0-b683-03199aa28c54 6acb792fe53f7d914d45c0ee02d89f0c {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.WXS.A.hg38 C3L-00010 CCRCC WXS tissue_normal CPT0001230009 7164a927-f35a-48c9-ba0c-e4904b529ee8_wxs_gdc_realn.bam 49556079733 BAM harmonized CPTAC3 e36a93f3-c700-4fb0-a133-65d5614ab5d5 efa111b83dc21413b5bc9856f6905add {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00010.WXS.N C3L-00010 CCRCC WXS blood_normal CPT0000060163 CPT0000060163.WholeExome.RP-1303.bam 34454726881 BAM aligned CPTAC3 98558d41-ebe6-4b31-b6a0-bee3afacfa5f f533c2766454b78390b2c4a1d8de687d {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal"} -C3L-00010.WXS.N.hg38 C3L-00010 CCRCC WXS blood_normal CPT0000060163 5fc376df-4539-47ef-9749-44d36230a941_gdc_realn.bam 48023683747 BAM harmonized CPTAC3 4a19a2d9-2a54-4cb1-aaf9-99309b5fb30a 439efb505ef15a4282bb8af045cbff06 {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal"} -C3L-00010.WXS.T C3L-00010 CCRCC WXS tumor CPT0001220165 CPT0001220165.WholeExome.RP-1303.bam 35415729734 BAM aligned CPTAC3 04dfca48-088d-480f-8c97-8b82c8626c68 230172cb1b0aa099b0360401878965ae {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor"} -C3L-00010.WXS.T.hg38 C3L-00010 CCRCC WXS tumor CPT0001220165 7a2e2088-9a18-4694-a4ca-f688ebd5331f_gdc_realn.bam 48553190444 BAM harmonized CPTAC3 438ef2e5-292c-43e1-a9bb-6c022cd537f4 304cbe56091bb055a28bb965b1f44b3d {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor"} -C3L-00011.MethArray.Green.A C3L-00011 CCRCC Methylation_Array tissue_normal CPT0001350014 204930630109_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9902e090-3922-466f-a989-7ef4cf5cec1d 4d6e830068fa2dce02e30eeb2797a338 {"aliquot_tag": "ALQ_eeb25cff", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.MethArray.Green.T C3L-00011 CCRCC Methylation_Array tumor CPT0001340005 201557540007_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9e85224d-5077-40b6-92dc-091c83278d22 682ae8e6ccd58d1b866226f0556a9fa0 {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor"} -C3L-00011.MethArray.Red.A C3L-00011 CCRCC Methylation_Array tissue_normal CPT0001350014 204930630109_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 83364d59-a4b1-4183-b5bf-9941c1f7cdb5 c0d8b9375378e3505b4abac9a90706a5 {"aliquot_tag": "ALQ_eeb25cff", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.MethArray.Red.T C3L-00011 CCRCC Methylation_Array tumor CPT0001340005 201557540007_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 e4fd8e80-aa20-41c8-a477-62fc988ccb97 d65c642e216ba0c03d113a14c4f3ede4 {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor"} -C3L-00011.miRNA-Seq.A.hg38 C3L-00011 CCRCC miRNA-Seq tissue_normal CPT0001350006 e04fbc84-8560-4ddd-9406-81537e5044e3_mirnaseq_gdc_realn.bam 184111167 BAM harmonized CPTAC3 1b0cea08-4514-492f-bd2c-6bb432b938b8 aaaf13ba135ddbf172f1c692c3b5ec18 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.miRNA-Seq.S24_L005_R1.A C3L-00011 CCRCC miRNA-Seq tissue_normal CPT0001350006 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L005_R1_001.unaln.bam 165562262 BAM S24_L005_R1 unaligned CPTAC3 d656d526-67ab-4a03-ba73-a3eeb9a8030b 47e368d4b65dfd59402ee28bf59978f4 {"aliquot_tag": "ALQ_19a70c92", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.miRNA-Seq.S8_L005_R1.T C3L-00011 CCRCC miRNA-Seq tumor CPT0001340164 181119_UNC31-K00269_0165_AH27WCBBXY_CACTCA_S8_L005_R1_001.unaln.bam 193164535 BAM S8_L005_R1 unaligned CPTAC3 f3f2fc21-6b00-48a0-a065-8aad3634040d ed743f995d7803d9c3e553f81743cd95 {"aliquot_tag": "ALQ_9d5189bf", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00011.miRNA-Seq.T.hg38 C3L-00011 CCRCC miRNA-Seq tumor CPT0001340164 ae175b52-c84d-415a-99c2-c30182ad6c99_mirnaseq_gdc_realn.bam 207460413 BAM harmonized CPTAC3 04d17f0d-2784-49b3-b339-ade6c6ff42f3 b641daf7d3afb6d1b9e00152ee94c766 {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor"} -C3L-00011.RNA-Seq.chimeric.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.chimeric.gdc_realn.bam 93920816 BAM chimeric harmonized CPTAC3 cde8b397-b14d-4551-887c-68ab73529cc8 a8f215fad0e55258fe22fe88fed798c2 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.RNA-Seq.chimeric.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.chimeric.gdc_realn.bam 76207014 BAM chimeric harmonized CPTAC3 3b99edfd-51f3-4015-9c35-b450b1a5e57c 4213dd6e1fa6419880aef4445ba52026 {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor"} -C3L-00011.RNA-Seq.genomic.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.genomic.gdc_realn.bam 8481564508 BAM genomic harmonized CPTAC3 28109c75-2874-4466-89b3-01623efb8918 aeaab4651a6dab15dc0aa83cafd93a92 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.RNA-Seq.genomic.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.genomic.gdc_realn.bam 9218028419 BAM genomic harmonized CPTAC3 d2d422f1-d398-4e60-b572-adfa9bd756e4 26946328f944a5713ef0b0dcd691b08f {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor"} -C3L-00011.RNA-Seq.S59_L008_R1.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R1_001.fastq.gz 4229587764 FASTQ S59_L008_R1 unaligned CPTAC3 a75e662a-1759-4c8d-a41a-ee2d0e37156b f88867fb6fe2bd6f526bc85105acd41c {"aliquot_tag": "ALQ_19a70c92", "sample": "S59", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.RNA-Seq.S59_L008_R2.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R2_001.fastq.gz 4450162125 FASTQ S59_L008_R2 unaligned CPTAC3 5fb7500f-aafe-4cf3-b932-cbb5894ca6ea 5c7959f56b1e8be2afaaba669c8ceead {"aliquot_tag": "ALQ_19a70c92", "sample": "S59", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.RNA-Seq.S5_L002_R1.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 4527861646 FASTQ S5_L002_R1 unaligned CPTAC3 d252be0f-df6b-49c5-899a-ff49ae494734 48d02ecafb894ce49c96a5e6c8e08f90 {"aliquot_tag": "ALQ_9d5189bf", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00011.RNA-Seq.S5_L002_R2.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 5020359841 FASTQ S5_L002_R2 unaligned CPTAC3 ec72b0a4-24ba-49e4-9b07-36302c576165 68175725cba52c59195e2bcbbc0803a9 {"aliquot_tag": "ALQ_9d5189bf", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00011.RNA-Seq.transcriptome.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.transcriptome.gdc_realn.bam 10575132510 BAM transcriptome harmonized CPTAC3 1b5715fb-31f3-46c3-82a0-9a3363d1ca33 61835de0c1a85dc320fd7ac9fd7f4f00 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.RNA-Seq.transcriptome.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.transcriptome.gdc_realn.bam 14532670630 BAM transcriptome harmonized CPTAC3 13b2f844-a209-4255-925b-a3aa2231fb41 22a5be919d155cf915235ab3b60915c1 {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor"} -C3L-00011.WGS.A C3L-00011 CCRCC WGS tissue_normal CPT0001350009 CPT0001350009.WholeGenome.RP-1303.bam 63843661770 BAM aligned CPTAC3 e3a74633-2d2a-4ab4-bd6f-9b2ef354fa30 f825d81f1b7a871608c7423b0589a3b3 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.WGS.A.hg38 C3L-00011 CCRCC WGS tissue_normal CPT0001350009 5637db92-8716-4190-8c2e-9a32bb099cf6_wgs_gdc_realn.bam 94084523957 BAM harmonized CPTAC3 8f6c22b5-83c0-4518-bc4e-a5db09f87e97 70aef02d165226e2de6964d597e249d3 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.WGS.N C3L-00011 CCRCC WGS blood_normal CPT0000090163 CPT0000090163.WholeGenome.RP-1303.bam 145138045697 BAM aligned CPTAC3 8a4aa148-fa9f-4eee-80ab-9d649f2a6431 494a47fa5d3888cd0e5d003b42afe5f9 {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00011.WGS.N.hg38 C3L-00011 CCRCC WGS blood_normal CPT0000090163 1fd51af9-c67f-4c54-8c8e-db4aef40d5ad_gdc_realn.bam 211685129229 BAM harmonized CPTAC3 10bbe16c-ba5d-4489-84d1-dbdd5ffa54ed 9d47ddb068ca77e7c1acb85f3cc37971 {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00011.WGS.T C3L-00011 CCRCC WGS tumor CPT0001340005 CPT0001340005.WholeGenome.RP-1303.bam 131364438329 BAM aligned CPTAC3 17ea2f66-6dba-4b66-afa7-491b715b8865 d56a19f87cd3407d9928412ab137bfcc {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor"} -C3L-00011.WGS.T.hg38 C3L-00011 CCRCC WGS tumor CPT0001340005 f47b3035-cf5e-4905-8859-1459781618fc_gdc_realn.bam 189303516909 BAM harmonized CPTAC3 215cedd8-5ce2-4c50-a85d-9f7197e6472c 8dcd3747395595a93478b3b403a2c2ba {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor"} -C3L-00011.WXS.A C3L-00011 CCRCC WXS tissue_normal CPT0001350009 CPT0001350009.WholeExome.RP-1303.bam 29896555112 BAM aligned CPTAC3 96424254-ed70-443e-a152-bd43341aa7d0 abb894b1a949abbc1f2ca11acec8abd6 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.WXS.A.hg38 C3L-00011 CCRCC WXS tissue_normal CPT0001350009 5637db92-8716-4190-8c2e-9a32bb099cf6_wxs_gdc_realn.bam 40686299816 BAM harmonized CPTAC3 5d3c8984-b9d1-4002-9877-bde7004f5b20 da7121ceb1a842bb65d20516e8d5c6d8 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00011.WXS.N C3L-00011 CCRCC WXS blood_normal CPT0000090163 CPT0000090163.WholeExome.RP-1303.bam 31071504458 BAM aligned CPTAC3 905880de-2b08-4fb7-8e57-d3b79efc5fb7 8389b5c0be0eebec7db70d5388ecb44e {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00011.WXS.N.hg38 C3L-00011 CCRCC WXS blood_normal CPT0000090163 1fd51af9-c67f-4c54-8c8e-db4aef40d5ad_gdc_realn.bam 43773407484 BAM harmonized CPTAC3 c21dd423-3756-4eff-baac-5bba006dcddc cbcca342973ce66509ffce2f320a554b {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00011.WXS.T C3L-00011 CCRCC WXS tumor CPT0001340005 CPT0001340005.WholeExome.RP-1303.bam 28970151226 BAM aligned CPTAC3 ecb947fc-fc74-4e9b-a11a-21cb025f50d9 af5b9bf38036a88238ab98a11e5f868c {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor"} -C3L-00011.WXS.T.hg38 C3L-00011 CCRCC WXS tumor CPT0001340005 f47b3035-cf5e-4905-8859-1459781618fc_gdc_realn.bam 39407921534 BAM harmonized CPTAC3 2f688f41-2b8e-4282-a2b8-ce07390d4c4b c21a7ea4231aff58360aa30c9ddaa11e {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor"} -C3L-00017.MethArray.Green.A C3L-00017 PDA Methylation_Array tissue_normal CPT0000270008 203561450017_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e9daa8b4-e05b-475f-a37c-efe598df3539 f547adfbac7c02930af0a769802b9107 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.MethArray.Green.T C3L-00017 PDA Methylation_Array tumor CPT0000250005 202178770006_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3efda741-accc-461e-a1e8-78c82d7c63eb ac101243e5cf64bf40ccdfa1945d8a08 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor"} -C3L-00017.MethArray.Red.A C3L-00017 PDA Methylation_Array tissue_normal CPT0000270008 203561450017_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 2661771e-2854-4c68-ba50-156b41fb6a72 ae21f85986577294ad25fa9d069a9299 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.MethArray.Red.T C3L-00017 PDA Methylation_Array tumor CPT0000250005 202178770006_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 b9f50267-3fc2-42dd-a9ad-6c6c12ddf8eb bb2209a84dc734daf865c09c252f13da {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor"} -C3L-00017.miRNA-Seq.A.hg38 C3L-00017 PDA miRNA-Seq tissue_normal CPT0000270006 25542831-ec73-47ac-bf88-7ff8da45c341_mirnaseq_gdc_realn.bam 281278348 BAM harmonized CPTAC3 79b378f0-968f-4d13-abe6-647051c980b7 b5b4d268e18463799e3e4b1dbec91e41 {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.miRNA-Seq.S31_L002_R1.T C3L-00017 PDA miRNA-Seq tumor CPT0000250008 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L002_R1_001.unaln.bam 314125962 BAM S31_L002_R1 unaligned CPTAC3 047b497c-8c8a-400f-9ccb-bba22c7a1c2f e3fc260b7605d8df7ea907dcb50bfbb7 {"aliquot_tag": "ALQ_9334f984", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00017.miRNA-Seq.S47_L002_R1.A C3L-00017 PDA miRNA-Seq tissue_normal CPT0000270006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 257328449 BAM S47_L002_R1 unaligned CPTAC3 89834361-a55f-4bee-a4c5-23ee9e95dbe6 d895bbf9dabed106b39294e6ea119759 {"aliquot_tag": "ALQ_e4c87e3", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.miRNA-Seq.T.hg38 C3L-00017 PDA miRNA-Seq tumor CPT0000250008 2ef609a6-cc14-4705-b02a-fb080fb25796_mirnaseq_gdc_realn.bam 342883849 BAM harmonized CPTAC3 bcdb1f0b-bbe9-4606-a0f6-29a116719508 9e7902427780f7dea55569106a11dc70 {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor"} -C3L-00017.RNA-Seq.chimeric.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.chimeric.gdc_realn.bam 139214517 BAM chimeric harmonized CPTAC3 143f0d4b-922f-4765-aa64-bc67a31ab800 8a88b166a19aae523f9ac3fcb2f1f57e {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.RNA-Seq.chimeric.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.chimeric.gdc_realn.bam 142374120 BAM chimeric harmonized CPTAC3 8326ad43-5805-4851-be31-c2861e6c9564 31de717431230667cccfff5136cea035 {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor"} -C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.genomic.gdc_realn.bam 9982605016 BAM genomic harmonized CPTAC3 5ab6faef-c481-4d0c-92f9-5944b7dfd039 986d14f57362a146f385d443ace2db4b {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.genomic.gdc_realn.bam 7422416912 BAM genomic harmonized CPTAC3 1ba99f67-3232-4c24-99d1-6e0e25129e33 6c0c18c9b39ea991cab51953849e8a2c {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor"} -C3L-00017.RNA-Seq.S14_L004_R1.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R1_001.fastq.gz 3555365035 FASTQ S14_L004_R1 unaligned CPTAC3 d2b5f6b3-828b-4320-9e4d-4b2eaa4e7e6f 74d89675af92eec43b7f5347e678c16a {"aliquot_tag": "ALQ_9334f984", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00017.RNA-Seq.S14_L004_R2.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R2_001.fastq.gz 4020489440 FASTQ S14_L004_R2 unaligned CPTAC3 4f7a1cdc-e30a-407f-927d-3eb0e4185534 cab2fec0f481139de189358c73230131 {"aliquot_tag": "ALQ_9334f984", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00017.RNA-Seq.S59_L007_R1.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R1_001.fastq.gz 4470007340 FASTQ S59_L007_R1 unaligned CPTAC3 7829f978-5fd7-436a-9ec2-2e58a7bcb1f7 82a71a50e8f0a2225e76b1edb78e1eae {"aliquot_tag": "ALQ_e4c87e3", "sample": "S59", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.RNA-Seq.S59_L007_R2.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R2_001.fastq.gz 4682486832 FASTQ S59_L007_R2 unaligned CPTAC3 8f7d0b77-134e-4216-9d8d-411f0d7ed0ed 41c922b894a8950361f502647b659222 {"aliquot_tag": "ALQ_e4c87e3", "sample": "S59", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.RNA-Seq.transcriptome.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.transcriptome.gdc_realn.bam 11565402806 BAM transcriptome harmonized CPTAC3 61e5bc4d-5850-4b8d-a324-9ab1101fec80 383c8a2a1900b8fbab791774f096fbbd {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.RNA-Seq.transcriptome.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.transcriptome.gdc_realn.bam 10322547280 BAM transcriptome harmonized CPTAC3 da0d3a7a-7e22-4a23-9111-7a2070097da3 3f2ccdf0a555de7c2640e255e8be5cc2 {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor"} -C3L-00017.Targeted.T C3L-00017 PDA Targeted_Sequencing tumor CPT0000250005_1 CPT0000250005_1.CustomSelection.RP-1303.PDO-18786.bam 5165621997 BAM aligned CPTAC3 30e70748-ade6-4d8e-a4a3-52abe0007a5d fd9ab30598aafba43c7f420a69828ad6 {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor"} -C3L-00017.Targeted.T.hg38 C3L-00017 PDA Targeted_Sequencing tumor CPT0000250005_1 b6dfbba3-5e2c-40c1-8246-1f47c70490a2_targetedsequencing_gdc_realn.bam 7174905772 BAM harmonized CPTAC3 3b901733-abe1-4210-b613-997ebf7d72e9 940cde595e1416d11fd832b0e3756154 {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor"} -C3L-00017.WGS.A C3L-00017 PDA WGS tissue_normal CPT0000270008 CPT0000270008.WholeGenome.RP-1303.bam 52958782756 BAM aligned CPTAC3 87f86471-d9bf-4b5c-90cb-60293a43c136 df7c547cce14141c44cd625ae944df1e {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.WGS.A.hg38 C3L-00017 PDA WGS tissue_normal CPT0000270008 3daadcf0-24a3-4f29-a9e3-cb177cc7004e_wgs_gdc_realn.bam 76800590904 BAM harmonized CPTAC3 f60e0cf4-9070-4d80-a522-e5eda6e81c1e 980cb7e57bef3448581e206efd02f804 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.WGS.N C3L-00017 PDA WGS blood_normal CPT0000580002 CPT0000580002.WholeGenome.RP-1303.bam 76912117733 BAM aligned CPTAC3 ccc889ff-4b3a-49d7-b85f-07698f9e3e07 56c2cdd84da291216a073f06f6d0271f {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal"} -C3L-00017.WGS.N.hg38 C3L-00017 PDA WGS blood_normal CPT0000580002 6aa9462a-bda4-4c7e-9049-dfd4e79fab18_gdc_realn.bam 113878540714 BAM harmonized CPTAC3 2eb95024-ed2d-471d-bcf7-199ef3348719 d4154cef93134009a0959471d11b21e4 {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal"} -C3L-00017.WGS.T C3L-00017 PDA WGS tumor CPT0000250005 CPT0000250005.WholeGenome.RP-1303.bam 75201379743 BAM aligned CPTAC3 6c5d60a8-05fa-4948-b3e6-386660b666da 70924c50764e234fd16dbb068a3f191e {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor"} -C3L-00017.WGS.T.hg38 C3L-00017 PDA WGS tumor CPT0000250005 90daf6b6-b405-431c-bb0d-6f52df3e6ef9_gdc_realn.bam 112204550063 BAM harmonized CPTAC3 ca8326ec-c84d-4efa-a39d-25f53e5a8c2a c21b73967367af42eec4a33235a64854 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor"} -C3L-00017.WXS.A C3L-00017 PDA WXS tissue_normal CPT0000270008 CPT0000270008.WholeExome.RP-1303.bam 29076941006 BAM aligned CPTAC3 197e3d81-c65e-4051-bcd2-e01c4ef1965f ea83a83ac48ef314c98437c8feaf61fd {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.WXS.A.hg38 C3L-00017 PDA WXS tissue_normal CPT0000270008 3daadcf0-24a3-4f29-a9e3-cb177cc7004e_wxs_gdc_realn.bam 40202532318 BAM harmonized CPTAC3 bcf4718c-781d-4f7b-befb-97091a44b9ad c1ee5a8ecd70bb4b5cb8999623ae1998 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00017.WXS.N C3L-00017 PDA WXS blood_normal CPT0000580002 CPT0000580002.WholeExome.RP-1303.bam 33108244009 BAM aligned CPTAC3 37992895-dbcb-434e-8fea-d04a35ae3512 78cff33f5c375d174cf690b6a3278758 {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal"} -C3L-00017.WXS.N.hg38 C3L-00017 PDA WXS blood_normal CPT0000580002 6aa9462a-bda4-4c7e-9049-dfd4e79fab18_gdc_realn.bam 46051956754 BAM harmonized CPTAC3 f99797be-7884-4f95-9052-7637fe7de122 a42e0531b66e75b5c86b75fdb29cd8b9 {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal"} -C3L-00017.WXS.T C3L-00017 PDA WXS tumor CPT0000250005_1 CPT0000250005_1.WholeExome.RP-1303.bam 52414701226 BAM aligned CPTAC3 6004cd9d-9c4e-4259-b57c-1ab203015d2a d9c4ba97a0e9b59eefec9558051348c4 {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor"} -C3L-00017.WXS.T C3L-00017 PDA WXS tumor CPT0000250005 CPT0000250005.WholeExome.RP-1303.bam 25526686050 BAM aligned CPTAC3 60b88883-2f6d-4cff-b714-d0f208331f8e a666a8d515b4c6f8243fc998bcfa03b7 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor"} -C3L-00017.WXS.T.hg38 C3L-00017 PDA WXS tumor CPT0000250005_1 b6dfbba3-5e2c-40c1-8246-1f47c70490a2_wxs_gdc_realn.bam 70928730248 BAM harmonized CPTAC3 4e2c5edf-8162-46f2-bb3e-11de6846c0e3 bacca1b690a7116b0e312469acf599ec {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor"} -C3L-00017.WXS.T.hg38 C3L-00017 PDA WXS tumor CPT0000250005 90daf6b6-b405-431c-bb0d-6f52df3e6ef9_gdc_realn.bam 34757652255 BAM harmonized CPTAC3 83ea0e10-82b1-4092-b8a4-770e179ef4cd b29ccc6a9e383fd2a3b3cb96d1acb6c6 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor"} -C3L-00026.MethArray.Green.A C3L-00026 CCRCC Methylation_Array tissue_normal CPT0001510014 204930640083_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 364ecfcb-69ae-48fe-a4cf-6f5234fc6071 94cc77c83d32ea9630ab070407f045d8 {"aliquot_tag": "ALQ_cd6b1922", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.MethArray.Green.T C3L-00026 CCRCC Methylation_Array tumor CPT0001500005 201557560049_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7c2b8116-e486-4120-b402-73f9e001f138 14147deb18e98d04f27dd3946930ccc7 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor"} -C3L-00026.MethArray.Red.A C3L-00026 CCRCC Methylation_Array tissue_normal CPT0001510014 204930640083_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 a10b34be-2a2f-4e6c-bcd4-31bab525e8ab 2173932ccbdf924dfafad1983b9078f0 {"aliquot_tag": "ALQ_cd6b1922", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.MethArray.Red.T C3L-00026 CCRCC Methylation_Array tumor CPT0001500005 201557560049_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 0733f93d-6e41-4445-93b1-eebb01f92aea b006c6e5ac4ed7c695332d56cd1cd700 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor"} -C3L-00026.miRNA-Seq.A.hg38 C3L-00026 CCRCC miRNA-Seq tissue_normal CPT0001510006 07135762-40dd-42ed-816f-04d268714d2f_mirnaseq_gdc_realn.bam 454025786 BAM harmonized CPTAC3 3915d84c-c84b-4667-8156-74428c58e041 6a09b0062adc8e9120e19eda47032ceb {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.miRNA-Seq.S11_L001_R1.T C3L-00026 CCRCC miRNA-Seq tumor CPT0001500164 181113_UNC31-K00269_0164_AH23NNBBXY_CATTTT_S11_L001_R1_001.unaln.bam 199590031 BAM S11_L001_R1 unaligned CPTAC3 2333fa94-9d2b-4475-a329-47f94361b99b 5fcb35b32e7c335f1b9e3a8f712a2e18 {"aliquot_tag": "ALQ_be88cc62", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00026.miRNA-Seq.S1_L005_R1.A C3L-00026 CCRCC miRNA-Seq tissue_normal CPT0001510006 181119_UNC31-K00269_0165_AH27WCBBXY_ACTGAT_S1_L005_R1_001.unaln.bam 424738050 BAM S1_L005_R1 unaligned CPTAC3 cc7863ce-6424-48a5-9694-a1d42e40dd07 9dc8993f433bd2cca2c04034576be71a {"aliquot_tag": "ALQ_3a7e494f", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.miRNA-Seq.T.hg38 C3L-00026 CCRCC miRNA-Seq tumor CPT0001500164 fe2247ec-0a0d-4f1a-a807-e6f64f9968fc_mirnaseq_gdc_realn.bam 215784336 BAM harmonized CPTAC3 6043cad4-0b59-46cf-8bd9-34fe7844c094 19d93cc6ded84e853a6bd36586528a03 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor"} -C3L-00026.RNA-Seq.chimeric.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.chimeric.gdc_realn.bam 70484774 BAM chimeric harmonized CPTAC3 c323dc33-9c51-4ecc-9548-17fe3ebc43dd c5f028e6b75eba2f2db38e40683155f0 {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.RNA-Seq.chimeric.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.chimeric.gdc_realn.bam 74899587 BAM chimeric harmonized CPTAC3 6999cb2d-3519-414b-a9bb-4caefca18b8c d182038f21995655d0c6aecf7ee1c753 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor"} -C3L-00026.RNA-Seq.genomic.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.genomic.gdc_realn.bam 8641894267 BAM genomic harmonized CPTAC3 c4b806cb-9ab2-406f-9347-b3b1a71d3eaa 51ca6cf6cb38f2cb247f7015fa3fc768 {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.RNA-Seq.genomic.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.genomic.gdc_realn.bam 8797894258 BAM genomic harmonized CPTAC3 755caff9-dc86-4e8e-bfdb-72a195611e5e 9f9e22ddd9d1b6bbb0f7c659e699e8c5 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor"} -C3L-00026.RNA-Seq.S16_L005_R1.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4211339697 FASTQ S16_L005_R1 unaligned CPTAC3 aa4fa0b3-1708-4638-8bab-55b0ba3f5248 c080508a0dc489706dbf54f7ddfd08cd {"aliquot_tag": "ALQ_be88cc62", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00026.RNA-Seq.S16_L005_R2.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4627325177 FASTQ S16_L005_R2 unaligned CPTAC3 b25a3a34-58ce-4d86-9e1b-c21a39ee91e4 390dd7454a32b452d70d6cc7b8028f3f {"aliquot_tag": "ALQ_be88cc62", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00026.RNA-Seq.S58_L008_R1.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R1_001.fastq.gz 4302255408 FASTQ S58_L008_R1 unaligned CPTAC3 4f85aa59-7db7-49dc-aa05-7b6b027b2791 c892c90f42d872f030f21f6ed7dbb631 {"aliquot_tag": "ALQ_3a7e494f", "sample": "S58", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.RNA-Seq.S58_L008_R2.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R2_001.fastq.gz 4209761756 FASTQ S58_L008_R2 unaligned CPTAC3 9648977f-b52a-4043-9b7a-04ecc1647e98 1ab4fdab8936f80704d22e59942ed13d {"aliquot_tag": "ALQ_3a7e494f", "sample": "S58", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.RNA-Seq.transcriptome.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.transcriptome.gdc_realn.bam 11270808038 BAM transcriptome harmonized CPTAC3 611def6f-a25a-4df0-8965-17c63547d3c2 4a5501aed8e4afff1b5999cc55da77df {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.RNA-Seq.transcriptome.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.transcriptome.gdc_realn.bam 12490368435 BAM transcriptome harmonized CPTAC3 3552cc9a-e3b0-484b-862f-742d61253817 2997bde8d8afa17f7cb9b536d44c3995 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor"} -C3L-00026.WGS.A C3L-00026 CCRCC WGS tissue_normal CPT0001510009 CPT0001510009.WholeGenome.RP-1303.bam 56827082574 BAM aligned CPTAC3 06d06fdd-e16f-4652-879b-9034a91626b7 6f39be937d7b1f47d32e3e3fc85374cb {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.WGS.A.hg38 C3L-00026 CCRCC WGS tissue_normal CPT0001510009 e7e7be46-4ae9-4c07-8354-c3c310ea060a_wgs_gdc_realn.bam 83508451153 BAM harmonized CPTAC3 29bdccbd-b072-49d0-bfe1-721c3319a29a 30ea7eef1f58ef0cfa7a7331907393fe {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.WGS.N C3L-00026 CCRCC WGS blood_normal CPT0000130163 CPT0000130163.WholeGenome.RP-1303.bam 130400091410 BAM aligned CPTAC3 05797578-9d15-4ef5-ad0d-b5858c14ae69 34bc341edb288474c17e138ac2de6dde {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00026.WGS.N.hg38 C3L-00026 CCRCC WGS blood_normal CPT0000130163 4f432fe5-856b-4678-bd0c-e3170f1bf7d5_gdc_realn.bam 189691572924 BAM harmonized CPTAC3 6dcb94c3-b18b-4a17-8c51-3bb6beafa8ba c4dc475403912e65d2335d10e7e114df {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00026.WGS.T C3L-00026 CCRCC WGS tumor CPT0001500005 CPT0001500005.WholeGenome.RP-1303.bam 142142287667 BAM aligned CPTAC3 5d8dbed5-8688-4b46-9373-e53449d3328e bf677a25af44e7a5409b8bc854aa15e4 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor"} -C3L-00026.WGS.T.hg38 C3L-00026 CCRCC WGS tumor CPT0001500005 7fb72fd0-9f8d-46d5-bd34-9216e4be58ff_gdc_realn.bam 205257026715 BAM harmonized CPTAC3 f195488e-ec5c-446b-8f99-ec53af93c25c f720d8c1798d5f39932ce309cda1f0cd {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor"} -C3L-00026.WXS.A C3L-00026 CCRCC WXS tissue_normal CPT0001510009 CPT0001510009.WholeExome.RP-1303.bam 32033874579 BAM aligned CPTAC3 1ad9c57c-6dbb-4899-92e2-aee7e5e6bca9 95e3b94a3698f8dbe0676d49e0d746bb {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.WXS.A.hg38 C3L-00026 CCRCC WXS tissue_normal CPT0001510009 e7e7be46-4ae9-4c07-8354-c3c310ea060a_wxs_gdc_realn.bam 43401231835 BAM harmonized CPTAC3 f8aabf06-5c24-4089-925f-93468d6b1f22 3564cbeef9fff98f09ac512dfba79b09 {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00026.WXS.N C3L-00026 CCRCC WXS blood_normal CPT0000130163 CPT0000130163.WholeExome.RP-1303.bam 31499035907 BAM aligned CPTAC3 5328ec3b-0f91-474a-85b0-5848c90a4566 69a08b5d1e46ea3a0bc58f6b827d8467 {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00026.WXS.N.hg38 C3L-00026 CCRCC WXS blood_normal CPT0000130163 4f432fe5-856b-4678-bd0c-e3170f1bf7d5_gdc_realn.bam 44121009766 BAM harmonized CPTAC3 7186023a-8b56-425b-a815-9ca685189848 893f7aa4671225bcbc46044a1b1e0439 {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00026.WXS.T C3L-00026 CCRCC WXS tumor CPT0001500005 CPT0001500005.WholeExome.RP-1303.bam 32854345076 BAM aligned CPTAC3 db80838b-a6a7-45b6-889e-7ea115fb9d65 b2727bceebf2e5746877029ff3deff1c {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor"} -C3L-00026.WXS.T.hg38 C3L-00026 CCRCC WXS tumor CPT0001500005 7fb72fd0-9f8d-46d5-bd34-9216e4be58ff_gdc_realn.bam 44648031817 BAM harmonized CPTAC3 46d9f1ef-7100-464b-9137-37f358f2c721 bdd63985347b28aec3bfc8410b700bd5 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor"} -C3L-00029.MethArray.Green.T C3L-00029 SAR Methylation_Array tumor CPT0001000005 202184990066_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3b324ab4-02c3-41e6-9518-07dcf98fc945 9c3179e96f044e5f416e04f71ac68ee3 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor"} -C3L-00029.MethArray.Red.T C3L-00029 SAR Methylation_Array tumor CPT0001000005 202184990066_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 29720c1c-ae42-4df2-a28a-3cc78c9fe7bb d2f3e118eb3263a12230b3b66e4e09a6 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor"} -C3L-00029.miRNA-Seq.S3_L001_R1.T C3L-00029 SAR miRNA-Seq tumor CPT0001000164 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 320594561 BAM S3_L001_R1 unaligned CPTAC3 981a34d1-38e1-4799-848f-de4fa4add2ca 79005404e980e57165072deb2465aced {"aliquot_tag": "ALQ_ee455dd1", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00029.miRNA-Seq.T.hg38 C3L-00029 SAR miRNA-Seq tumor CPT0001000164 5cebba2b-2399-4d25-ad36-a2cb54cf99df_mirnaseq_gdc_realn.bam 360391898 BAM harmonized CPTAC3 dfe79d0c-2cbf-41d4-95bb-7ff56135ae29 faf3413376ce2f3682c6980ad4aaa637 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor"} -C3L-00029.RNA-Seq.chimeric.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.chimeric.gdc_realn.bam 77023763 BAM chimeric harmonized CPTAC3 20c1cdba-eb9a-4cac-b6d4-de8ff07b6ae9 48086539c6e88e7a22e14e7b1f1e6677 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor"} -C3L-00029.RNA-Seq.genomic.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.genomic.gdc_realn.bam 7796614883 BAM genomic harmonized CPTAC3 307e1b0f-dcf7-4390-bb9a-1e04815080ce 39dfef6e55d7c67b780d7aa32b64ae34 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor"} -C3L-00029.RNA-Seq.S15_L005_R1.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3711574784 FASTQ S15_L005_R1 unaligned CPTAC3 75f83913-b8dc-4d06-b26b-d9f3f8358054 8556730781b046f1090197d315e2b7c1 {"aliquot_tag": "ALQ_ee455dd1", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00029.RNA-Seq.S15_L005_R2.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4058006716 FASTQ S15_L005_R2 unaligned CPTAC3 9f8cd923-494c-45f8-9519-4fb29f424b33 8bbf8654bfd2ac08513f24cf0bdadee2 {"aliquot_tag": "ALQ_ee455dd1", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00029.RNA-Seq.transcriptome.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.transcriptome.gdc_realn.bam 9886389928 BAM transcriptome harmonized CPTAC3 6dc883a5-4f0b-4327-a973-9e51a1932162 7d461994e396dc9b849101fd416a3df4 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor"} -C3L-00029.WGS.N C3L-00029 SAR WGS blood_normal CPT0000000163 CPT0000000163.WholeGenome.RP-1303.bam 79156050194 BAM aligned CPTAC3 7c9d3332-8812-4d65-a49b-aa48580f8575 21088a933be9c92ec769ccd7c563e849 {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00029.WGS.N.hg38 C3L-00029 SAR WGS blood_normal CPT0000000163 78e3baaf-7223-45a7-9126-5f5694c4e36a_gdc_realn.bam 121288730501 BAM harmonized CPTAC3 54554926-c19a-43cb-9bf6-896a1a6d6765 c95fdd97e2e7185ccef4f3c627c53cd1 {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00029.WGS.T C3L-00029 SAR WGS tumor CPT0001000005 CPT0001000005.WholeGenome.RP-1303.bam 75787194275 BAM aligned CPTAC3 95a6ffce-ecea-4832-96bc-945f36da4aeb ded2ee7994319804eacef38a5a00e8ef {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor"} -C3L-00029.WGS.T.hg38 C3L-00029 SAR WGS tumor CPT0001000005 86c234c7-1d32-4970-904d-0ba01fc84231_gdc_realn.bam 112595367333 BAM harmonized CPTAC3 e33f89a4-e6ee-404b-a2b6-497d6e5903e2 766e63b36cdb5c224cacb2932e5503ca {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor"} -C3L-00029.WXS.N C3L-00029 SAR WXS blood_normal CPT0000000163 CPT0000000163.WholeExome.RP-1303.bam 37015180104 BAM aligned CPTAC3 c4a2eef8-1400-4cf5-967a-33de4e420b48 6cfec46dbe530cb614906ac61127564f {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00029.WXS.N.hg38 C3L-00029 SAR WXS blood_normal CPT0000000163 78e3baaf-7223-45a7-9126-5f5694c4e36a_gdc_realn.bam 50703443140 BAM harmonized CPTAC3 2702a70c-54b3-4bb1-a3d4-bb4d1d106971 1c1da178ebbdb9ca43091d281e9640e7 {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00029.WXS.T C3L-00029 SAR WXS tumor CPT0001000005 CPT0001000005.WholeExome.RP-1303.bam 26052343542 BAM aligned CPTAC3 8d2485ef-8595-4330-8d0b-9b3b81bf6886 ffe33326df4a53862a787766b4fe4181 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor"} -C3L-00029.WXS.T.hg38 C3L-00029 SAR WXS tumor CPT0001000005 86c234c7-1d32-4970-904d-0ba01fc84231_gdc_realn.bam 35331408597 BAM harmonized CPTAC3 2aee09e9-9c2d-4220-8e85-491686272958 797fabd550e86d84371e8b34798526e2 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor"} -C3L-00032.MethArray.Green.T C3L-00032 UCEC Methylation_Array tumor CPT0001420005 201557560056_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5d9a0392-3fac-49c1-ac4c-6f57b24dba21 89e30483920cbb3bb065c6af69b77ea3 {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor"} -C3L-00032.MethArray.Red.T C3L-00032 UCEC Methylation_Array tumor CPT0001420005 201557560056_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 6d7604ca-2f77-4c93-9053-ec08558ce19c ee636428e54e382e6561a2cf46a17947 {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor"} -C3L-00032.miRNA-Seq.S10_L001_R1.T C3L-00032 UCEC miRNA-Seq tumor CPT0001420164 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L001_R1_001.unaln.bam 225139167 BAM S10_L001_R1 unaligned CPTAC3 3b3e6020-a967-493f-b19b-86b14b28ee50 9c580bb8aac952f54ff62811b1bff4dc {"aliquot_tag": "ALQ_f144ca7", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00032.miRNA-Seq.T.hg38 C3L-00032 UCEC miRNA-Seq tumor CPT0001420164 f4a5b588-dee4-48b0-880a-e2ac2a5c87d7_mirnaseq_gdc_realn.bam 246200924 BAM harmonized CPTAC3 f7e768cd-245f-4f33-ac75-e874907d92a6 cfce7326413875bcf7eac441197588d2 {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.chimeric.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.chimeric.gdc_realn.bam 67237437 BAM chimeric harmonized CPTAC3 9a75895a-fbc9-464d-abab-4e4fd167d332 40ca6387bed0591d562b13ce1d920fbc {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.chimeric.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.chimeric.gdc_realn.bam 160872272 BAM chimeric harmonized CPTAC3 809fec11-69ae-498e-bc60-3f7da2d62afd b17dd31d3553a1fa2a0d93206bb58d37 {"aliquot_tag": "ALQ_f17b21d8", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.genomic.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.genomic.gdc_realn.bam 8489533560 BAM genomic harmonized CPTAC3 adba109d-cb97-4da2-a002-8c7c83e4dcfe 7102c0e1e214948bf602c4b5549f661b {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.genomic.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.genomic.gdc_realn.bam 8946329719 BAM genomic harmonized CPTAC3 2aea5b0a-4ab2-485f-88ae-624907c35405 414425ee8b26d75a559b25edd8a9abd0 {"aliquot_tag": "ALQ_f17b21d8", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.S18_L005_R1.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3824767824 FASTQ S18_L005_R1 unaligned CPTAC3 9ae968f3-691d-4db3-9977-1ab3e5af9085 42601b29cb4c2d6a64cec25a7575ba62 {"aliquot_tag": "ALQ_f144ca7", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.S18_L005_R2.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4237608778 FASTQ S18_L005_R2 unaligned CPTAC3 423b6b09-02aa-4f47-9241-f75c1dad1161 ba4d70b682cafb918c62b01756e4e3f4 {"aliquot_tag": "ALQ_f144ca7", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.S80_R1.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R1_001.fastq.gz 5571302043 FASTQ S80_R1 unaligned CPTAC3 bfcd83b0-f3bc-4d11-93a9-d207bdddc1ff 3300d0aac581bbe35103d0af6ec8b811 {"aliquot_tag": "ALQ_f17b21d8", "sample": "S80", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.S80_R2.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R2_001.fastq.gz 5840340576 FASTQ S80_R2 unaligned CPTAC3 d225c652-9193-4847-b2e0-cd4c88b77fbe 3471561b2096aa5ae3d2efaa52b52f71 {"aliquot_tag": "ALQ_f17b21d8", "sample": "S80", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.transcriptome.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.transcriptome.gdc_realn.bam 13224813437 BAM transcriptome harmonized CPTAC3 55be32c8-1226-4687-aa83-b45c3ee263f0 c29651b9e6c5f0871279256ef4783833 {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor"} -C3L-00032.RNA-Seq.transcriptome.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.transcriptome.gdc_realn.bam 5730478956 BAM transcriptome harmonized CPTAC3 335a15c1-eee8-4b2b-821a-7844d4cc1781 edec900ff65ac7db32d0348142699f31 {"aliquot_tag": "ALQ_f17b21d8", "gdc_sample_type": "Primary Tumor"} -C3L-00032.WGS.N C3L-00032 UCEC WGS blood_normal CPT0000110163 CPT0000110163.WholeGenome.RP-1303.bam 126838678733 BAM aligned CPTAC3 27091176-c4d5-46a5-816c-ef22cf26f96c e4cfad074a9219c667a370468f9d82f8 {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00032.WGS.N.hg38 C3L-00032 UCEC WGS blood_normal CPT0000110163 97e153c1-7be4-4d7b-9d30-9545b56e6ddb_gdc_realn.bam 185157776977 BAM harmonized CPTAC3 a16b07d8-46c1-4fd9-8204-4f866aacfbec 70e523db56d68067e75bd952f710ce36 {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00032.WGS.T C3L-00032 UCEC WGS tumor CPT0001420005 CPT0001420005.WholeGenome.RP-1303.bam 131629095092 BAM aligned CPTAC3 4b7eee33-2cb9-4c54-b5e7-f8f72536f062 d7af1c291d9eb90b2644aaaa479dae48 {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor"} -C3L-00032.WGS.T.hg38 C3L-00032 UCEC WGS tumor CPT0001420005 9de43644-2816-4fac-8e1e-b49b18b2707b_gdc_realn.bam 188785671244 BAM harmonized CPTAC3 b93693c0-b88d-43d6-9b8b-97c8269982cc 17b88d6287bea206be2d60692d0e86af {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor"} -C3L-00032.WXS.N C3L-00032 UCEC WXS blood_normal CPT0000110163 CPT0000110163.WholeExome.RP-1303.bam 32387333790 BAM aligned CPTAC3 14ff5c48-84a3-4fb3-8d43-f148bf19c91a 4f84a2d8ce7c4ed9fb38fd80623a4a6c {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00032.WXS.N.hg38 C3L-00032 UCEC WXS blood_normal CPT0000110163 97e153c1-7be4-4d7b-9d30-9545b56e6ddb_gdc_realn.bam 45654381681 BAM harmonized CPTAC3 75a4369c-5247-427d-aabc-3157d08f2d8f 761727d7520f0b73f4b8b0d01a0c296b {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00032.WXS.T C3L-00032 UCEC WXS tumor CPT0001420005 CPT0001420005.WholeExome.RP-1303.bam 46342883255 BAM aligned CPTAC3 f7c2228a-b4cd-42b4-b355-ce777d9c54be 68bf557a79c352d2e9abad110062138e {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor"} -C3L-00032.WXS.T.hg38 C3L-00032 UCEC WXS tumor CPT0001420005 9de43644-2816-4fac-8e1e-b49b18b2707b_gdc_realn.bam 63526051521 BAM harmonized CPTAC3 0ec56b8f-f64a-401e-be41-d873fa31776b 51e29eea221dd4ae2b55694033cde9dc {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor"} -C3L-00035.MethArray.Green.T C3L-00035 SAR Methylation_Array tumor CPT0001100005 202178770006_R06C01_Grn.idat 13676240 IDAT Green NA CPTAC3 2f216082-cd76-489b-a5c8-c26cd5f66979 94ca3ff833b189323aeb9d7e5911a3ff {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor"} -C3L-00035.MethArray.Red.T C3L-00035 SAR Methylation_Array tumor CPT0001100005 202178770006_R06C01_Red.idat 13676240 IDAT Red NA CPTAC3 104c301d-4d22-4f0a-8b85-d384651f31e9 86b829a4f61099ed41e01b8b43ac9dfe {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor"} -C3L-00035.miRNA-Seq.A.hg38 C3L-00035 SAR miRNA-Seq tissue_normal CPT0001110006 2eb73a27-f6b8-4f65-a2b5-b16d7924a1d0_mirnaseq_gdc_realn.bam 395686770 BAM harmonized CPTAC3 cdc020a9-c7d3-4c69-b64f-872485f411e2 8ae9dc7bf70db994a1b4a1da31dcd1f8 {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.miRNA-Seq.S26_L006_R1.A C3L-00035 SAR miRNA-Seq tissue_normal CPT0001110006 181113_UNC31-K00269_0164_AH23NNBBXY_CGATGT_S26_L006_R1_001.unaln.bam 342186576 BAM S26_L006_R1 unaligned CPTAC3 cd4a7809-05fa-42eb-b810-6290997b59e8 5cf9801cd9546806c56bd04cba14ea8b {"aliquot_tag": "ALQ_a1ef0b59", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.miRNA-Seq.S5_L001_R1.T C3L-00035 SAR miRNA-Seq tumor CPT0001100164 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L001_R1_001.unaln.bam 219852901 BAM S5_L001_R1 unaligned CPTAC3 60908000-3d5c-4a19-b2cb-8bf29dfda9f3 9f2bdffa360ea2fb826f066e7870dd13 {"aliquot_tag": "ALQ_25198e74", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00035.miRNA-Seq.T.hg38 C3L-00035 SAR miRNA-Seq tumor CPT0001100164 de1398ba-55b8-4db1-8b25-b16550168058_mirnaseq_gdc_realn.bam 241476818 BAM harmonized CPTAC3 6815f7be-12b8-4bbd-a2b3-5629764cc8b8 379fd4a8f12998801cc5103c2f5d46df {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor"} -C3L-00035.RNA-Seq.chimeric.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.chimeric.gdc_realn.bam 53495188 BAM chimeric harmonized CPTAC3 c1b80a3a-f004-4f8b-ab2d-c1951bc89c06 89e294c3aaf17caad82ce99f51eaaa2f {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.RNA-Seq.chimeric.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.chimeric.gdc_realn.bam 88862855 BAM chimeric harmonized CPTAC3 f9ce9f83-d141-485a-8eb1-c18c84ee815d 6c5d1e35a6dbcacdd34bb0738ba7a7fe {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor"} -C3L-00035.RNA-Seq.genomic.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.genomic.gdc_realn.bam 9453697706 BAM genomic harmonized CPTAC3 34b695d6-3877-4fb0-a8d9-0bec90b82667 3811cae77fa9086429b0d5b6049c8275 {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.RNA-Seq.genomic.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.genomic.gdc_realn.bam 8620653265 BAM genomic harmonized CPTAC3 458ffbe0-84b0-45bb-93a3-38832937e064 823f5edc397da0a11a20e14d5987c679 {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor"} -C3L-00035.RNA-Seq.S13_L004_R1.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R1_001.fastq.gz 4056843805 FASTQ S13_L004_R1 unaligned CPTAC3 cbda050b-36e2-456a-a463-18a053c72b35 7ec3ebe7703206ed61cc502024c4a55f {"aliquot_tag": "ALQ_25198e74", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00035.RNA-Seq.S13_L004_R2.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R2_001.fastq.gz 4458423808 FASTQ S13_L004_R2 unaligned CPTAC3 49de624d-41e8-48fc-a604-13c0567799af 1564c0e58f06407845e9b1a52caf93e7 {"aliquot_tag": "ALQ_25198e74", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00035.RNA-Seq.S2_L007_R1.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4378527741 FASTQ S2_L007_R1 unaligned CPTAC3 b0438f96-71ec-49c0-9969-068f201232b0 9f0f748a7f55049d9b9621b38c7eaa0b {"aliquot_tag": "ALQ_a1ef0b59", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.RNA-Seq.S2_L007_R2.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4714952191 FASTQ S2_L007_R2 unaligned CPTAC3 177c4c24-764b-42ee-9af8-6ec5825562f4 00372e7ed0a1b41176a2f06a62023eae {"aliquot_tag": "ALQ_a1ef0b59", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.RNA-Seq.transcriptome.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.transcriptome.gdc_realn.bam 11367309490 BAM transcriptome harmonized CPTAC3 b34e0f4e-7283-4120-83a6-0b3dd824f6aa e7fa11f0e5ab6257193ee925a2b35894 {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.RNA-Seq.transcriptome.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.transcriptome.gdc_realn.bam 10483984278 BAM transcriptome harmonized CPTAC3 fae81c19-860c-4f28-a876-c7b72ad8f1ec 42abe89025173286b7ac40b11eeb391d {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor"} -C3L-00035.WGS.A C3L-00035 SAR WGS tissue_normal CPT0001110009 CPT0001110009.WholeGenome.RP-1303.bam 60212243664 BAM aligned CPTAC3 3628cafc-ce00-40c1-a364-3f1a8ca449e7 e5a4d13d9e2f7dbdf5fcdf4e468538eb {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.WGS.A.hg38 C3L-00035 SAR WGS tissue_normal CPT0001110009 5b4f85ae-83e1-4911-b8a6-4dc07423dc41_wgs_gdc_realn.bam 87903887799 BAM harmonized CPTAC3 311a7aa0-a35f-4601-a6b7-cd1be6936913 90b8caa080ff1068f12d664328604528 {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.WGS.N C3L-00035 SAR WGS blood_normal CPT0000030163 CPT0000030163.WholeGenome.RP-1303.bam 84386892225 BAM aligned CPTAC3 a39fa45b-2a0a-4a0b-8157-42169bd6dfac 23ced97a5fa0b46043f1a71bc4fbe723 {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal"} -C3L-00035.WGS.N.hg38 C3L-00035 SAR WGS blood_normal CPT0000030163 4a5f302d-91e4-4652-acc3-f1d2e91446f0_gdc_realn.bam 126458038925 BAM harmonized CPTAC3 ae05a1de-b7d2-4e11-90eb-865b31f0bf19 e156dda675085f628aed8cc6e26a06fc {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal"} -C3L-00035.WGS.T C3L-00035 SAR WGS tumor CPT0001100005 CPT0001100005.WholeGenome.RP-1303.bam 68547475756 BAM aligned CPTAC3 f480b9ef-eedb-4955-bc97-d501681ab619 7554270dc9a3d4238078118d43d26f4d {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor"} -C3L-00035.WGS.T.hg38 C3L-00035 SAR WGS tumor CPT0001100005 ecad9357-04fa-473b-8a2e-65e183eb563e_gdc_realn.bam 102791396309 BAM harmonized CPTAC3 fccd40e0-f494-4d8e-a217-72e3a1dcdc5a 9e9760b6ebfb91eb09811a36c085ba26 {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor"} -C3L-00035.WXS.A C3L-00035 SAR WXS tissue_normal CPT0001110009 CPT0001110009.WholeExome.RP-1303.bam 33047547449 BAM aligned CPTAC3 f68ecf94-47a1-462a-b879-2ac334852cf4 c05942f2ffe95e94d72ab9c1c5c8dfd2 {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.WXS.A.hg38 C3L-00035 SAR WXS tissue_normal CPT0001110009 5b4f85ae-83e1-4911-b8a6-4dc07423dc41_wxs_gdc_realn.bam 43913167176 BAM harmonized CPTAC3 902c210f-e23e-4e2c-a03a-871f19dff855 d8694ddfd7181a7432aebc3540ae36a3 {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00035.WXS.N C3L-00035 SAR WXS blood_normal CPT0000030163 CPT0000030163.WholeExome.RP-1303.bam 35926138813 BAM aligned CPTAC3 b694d42b-97f9-4cf3-95d1-f36b5e23ae44 94dda723d32f15aefb3b255d6cd1642e {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal"} -C3L-00035.WXS.N.hg38 C3L-00035 SAR WXS blood_normal CPT0000030163 4a5f302d-91e4-4652-acc3-f1d2e91446f0_gdc_realn.bam 49188054090 BAM harmonized CPTAC3 4afa74ce-f112-4dee-b0c6-340b2db90ec5 1f19979abb8d092a70499fd2a7d13618 {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal"} -C3L-00035.WXS.T C3L-00035 SAR WXS tumor CPT0001100005 CPT0001100005.WholeExome.RP-1303.bam 30942428083 BAM aligned CPTAC3 46cedf30-7d2d-4fe7-8c20-8b9ae74adf22 8d71a7fef3e81d9e9552975f259f99be {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor"} -C3L-00035.WXS.T.hg38 C3L-00035 SAR WXS tumor CPT0001100005 ecad9357-04fa-473b-8a2e-65e183eb563e_gdc_realn.bam 42787684371 BAM harmonized CPTAC3 3247a52c-2fe8-4c8d-b771-512adaf30cde c893823b5d36ea8e8ae302c0bd3f4851 {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor"} -C3L-00079.MethArray.Green.A C3L-00079 CCRCC Methylation_Array tissue_normal CPT0001270014 204930630111_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1d4e92db-c33f-48ab-a854-d098c8b671a3 62886a81fe4541f18dab77fc0e4f5ef3 {"aliquot_tag": "ALQ_5f2edc3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.MethArray.Green.T C3L-00079 CCRCC Methylation_Array tumor CPT0001260005 201557560005_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0b4a56dd-b0dd-4fad-b4ff-0867fecac221 d2fd093f216110763e20c259b0066dfe {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor"} -C3L-00079.MethArray.Red.A C3L-00079 CCRCC Methylation_Array tissue_normal CPT0001270014 204930630111_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 d9f86ecd-c600-45ae-88b1-48bd6d48f4f8 258bef0a9b077698d2e63a9cd0c4c1f2 {"aliquot_tag": "ALQ_5f2edc3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.MethArray.Red.T C3L-00079 CCRCC Methylation_Array tumor CPT0001260005 201557560005_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 032603a3-4277-4b1f-88e3-433662c1afc4 f5e8a394dc258c6d1f9bae4943ef75c2 {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor"} -C3L-00079.miRNA-Seq.A.hg38 C3L-00079 CCRCC miRNA-Seq tissue_normal CPT0001270006 52937cb2-3c89-467e-9e4e-d8116146ff68_mirnaseq_gdc_realn.bam 211094160 BAM harmonized CPTAC3 78b59dd9-1c94-47f2-92dd-e7e92d8bfa26 d6d653d1e6bb64e3baacc5856253af1e {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.miRNA-Seq.S25_L004_R1.T C3L-00079 CCRCC miRNA-Seq tumor CPT0001260164 181113_UNC31-K00269_0164_AH23NNBBXY_ATCACG_S25_L004_R1_001.unaln.bam 174116959 BAM S25_L004_R1 unaligned CPTAC3 d5be5a79-be6c-4ae5-9f79-14a6d2a7ceaf b70f2df193b70bfda1cde324dfcebb8e {"aliquot_tag": "ALQ_2ccd097a", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00079.miRNA-Seq.S26_L004_R1.A C3L-00079 CCRCC miRNA-Seq tissue_normal CPT0001270006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L004_R1_001.unaln.bam 191504250 BAM S26_L004_R1 unaligned CPTAC3 f8468f33-edb8-4f0e-b9de-c5db1b338e80 b089d4769ecde0fbbe86ebde913fdfbe {"aliquot_tag": "ALQ_a83b8c57", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.miRNA-Seq.T.hg38 C3L-00079 CCRCC miRNA-Seq tumor CPT0001260164 98367696-9771-4a1d-af62-4e7bbe356ce8_mirnaseq_gdc_realn.bam 194675344 BAM harmonized CPTAC3 41838880-d581-443f-afb8-f8e0a7e7c81f 0a51cc6211f35a98d0dbb131d1f2f177 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor"} -C3L-00079.RNA-Seq.chimeric.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.chimeric.gdc_realn.bam 70075995 BAM chimeric harmonized CPTAC3 885db1d9-b636-4882-96cd-c41a503885fb 48508146230988713244d1894733fce8 {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.RNA-Seq.chimeric.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.chimeric.gdc_realn.bam 227050579 BAM chimeric harmonized CPTAC3 38c7bb30-383e-4103-b93b-5ce4161b0950 edf3fba316a8c971d97a8335424273f0 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor"} -C3L-00079.RNA-Seq.genomic.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.genomic.gdc_realn.bam 7938074317 BAM genomic harmonized CPTAC3 ef4131fa-9339-445d-89b8-2233f29252d9 1a4fc065ec2ab1f4487a49e8f7bf24f6 {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.RNA-Seq.genomic.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.genomic.gdc_realn.bam 7790430116 BAM genomic harmonized CPTAC3 3a7f21e6-a20c-4541-b7ef-dbd16a17a092 e5a7476bea5e23427b20d2ac8f701dc2 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor"} -C3L-00079.RNA-Seq.S24_L007_R1.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R1_001.fastq.gz 3940760935 FASTQ S24_L007_R1 unaligned CPTAC3 e328d98d-fa50-475e-a1b0-b9df37891c4e ff6181d9102864bf12b78a67c03570a3 {"aliquot_tag": "ALQ_2ccd097a", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00079.RNA-Seq.S24_L007_R2.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R2_001.fastq.gz 4337346188 FASTQ S24_L007_R2 unaligned CPTAC3 8dc8eb7a-c5f2-4bfd-a190-d62f38d82ada 2680b3778eaad97464eda1a61a1ae574 {"aliquot_tag": "ALQ_2ccd097a", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00079.RNA-Seq.S60_L008_R1.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R1_001.fastq.gz 3853474075 FASTQ S60_L008_R1 unaligned CPTAC3 90767875-a3ca-41b8-9528-a9728f3ca8ec cbcb67e23abbe576ddb4757922ae47cd {"aliquot_tag": "ALQ_a83b8c57", "sample": "S60", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.RNA-Seq.S60_L008_R2.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R2_001.fastq.gz 4192267366 FASTQ S60_L008_R2 unaligned CPTAC3 28d7f941-8d68-4955-a8ef-0a0d9c2b67ac cbac527244e14a14bb0ae30a07c52c19 {"aliquot_tag": "ALQ_a83b8c57", "sample": "S60", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.RNA-Seq.transcriptome.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.transcriptome.gdc_realn.bam 10037580390 BAM transcriptome harmonized CPTAC3 321d038f-86b1-4899-b168-80121e52a8c9 d683745c677a12cd61bc7210ff905ecf {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.RNA-Seq.transcriptome.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.transcriptome.gdc_realn.bam 11312942767 BAM transcriptome harmonized CPTAC3 d130ff4e-24f5-4fac-b5aa-622de9aa6e43 f366d5a534f5c57ca58bf43ccbbaeee1 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor"} -C3L-00079.scRNA-Seq.S4_L004_R1.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+GAATGTTGTG_S4_L004_R1_001.fastq.gz 2444698172 FASTQ S4_L004_R1 unaligned CPTAC3 04cb9c3e-86fd-4699-aac6-b932a07b84fa f6e9b5312f168f441d86389ec46b57c6 {"aliquot_tag": "ALQ_624ef58a", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00079.scRNA-Seq.S4_L004_R2.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+GAATGTTGTG_S4_L004_R2_001.fastq.gz 8830325502 FASTQ S4_L004_R2 unaligned CPTAC3 c3a6d4d8-8bb1-4e88-b395-a099c9459783 6990d3f2551533a3f23d9ff5a8f9cd48 {"aliquot_tag": "ALQ_624ef58a", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00079.scRNA-Seq.S5_L004_R1.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+CACAACATTC_S5_L004_R1_001.fastq.gz 3290649461 FASTQ S5_L004_R1 unaligned CPTAC3 0c29f30c-1684-4639-a8a8-a138423d17ba 5af6dd1a8d37ffe75ff759aa57b73d30 {"aliquot_tag": "ALQ_624ef58a", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00079.scRNA-Seq.S5_L004_R2.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+CACAACATTC_S5_L004_R2_001.fastq.gz 11874489370 FASTQ S5_L004_R2 unaligned CPTAC3 0de46f5a-2c28-4451-b953-e8c06549aebd 0cabc36ed002a34925b3d48c1e24f6f0 {"aliquot_tag": "ALQ_624ef58a", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00079.WGS.A C3L-00079 CCRCC WGS tissue_normal CPT0001270009 CPT0001270009.WholeGenome.RP-1303.bam 54535504797 BAM aligned CPTAC3 fda8e552-9732-45cc-8c81-51ea6dceab92 c68d57c401181279f045ca0f33f137ac {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.WGS.A.hg38 C3L-00079 CCRCC WGS tissue_normal CPT0001270009 66a0c38b-0783-488a-946b-85127b719408_wgs_gdc_realn.bam 80842969899 BAM harmonized CPTAC3 f27a1987-e3ff-4f15-90bd-2c5054b92f62 4cb8ab424ad7641556b52924d50c485b {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.WGS.N C3L-00079 CCRCC WGS blood_normal CPT0000070163 CPT0000070163.WholeGenome.RP-1303.bam 102959018874 BAM aligned CPTAC3 089f0221-be6c-4088-9ec9-945b2282cee9 39d1734d63694fa4aa5fd95461862440 {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00079.WGS.N.hg38 C3L-00079 CCRCC WGS blood_normal CPT0000070163 86c228d6-3005-46fd-937d-5a773191167e_gdc_realn.bam 150268708302 BAM harmonized CPTAC3 3eb84438-8a49-4386-804e-7a32c10e9eb0 69b70b1c04b88adec9096e91df5d639e {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00079.WGS.T C3L-00079 CCRCC WGS tumor CPT0001260005 CPT0001260005.WholeGenome.RP-1303.bam 124778911717 BAM aligned CPTAC3 7a798aa2-c28a-4ae8-8e25-f17d7405dbd2 4e8fe78db27a2f6c542b4ad446f88e12 {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor"} -C3L-00079.WGS.T.hg38 C3L-00079 CCRCC WGS tumor CPT0001260005 edc8a006-f1d6-44c5-a097-02792f48391c_gdc_realn.bam 180750058537 BAM harmonized CPTAC3 abac465f-b18f-4fb0-b967-adfcc6bf17c1 d3bc48c4e802f3bebd906afd34f4968e {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor"} -C3L-00079.WXS.A C3L-00079 CCRCC WXS tissue_normal CPT0001270009 CPT0001270009.WholeExome.RP-1303.bam 32113812283 BAM aligned CPTAC3 4ec5115c-c33f-4fbd-b0cc-042fdf796b9b 29d603066e771083d5f9fc72698f1389 {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.WXS.A.hg38 C3L-00079 CCRCC WXS tissue_normal CPT0001270009 66a0c38b-0783-488a-946b-85127b719408_wxs_gdc_realn.bam 43433999078 BAM harmonized CPTAC3 cb58ee45-9b1e-44f0-9b4e-da652894e14d 6faef8605f0c5a1a5f6779013713c20e {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00079.WXS.N C3L-00079 CCRCC WXS blood_normal CPT0000070163 CPT0000070163.WholeExome.RP-1303.bam 34065306969 BAM aligned CPTAC3 265ae531-f831-4540-88cb-42cc26395260 3886f3aead80b7206bd7b38d33e17a8d {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00079.WXS.N.hg38 C3L-00079 CCRCC WXS blood_normal CPT0000070163 86c228d6-3005-46fd-937d-5a773191167e_gdc_realn.bam 48126576471 BAM harmonized CPTAC3 619c5835-bcd0-48e0-9b4c-742a607382e9 e26130b6e605bd8b56172cef855e2152 {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00079.WXS.T C3L-00079 CCRCC WXS tumor CPT0001260005 CPT0001260005.WholeExome.RP-1303.bam 30057980227 BAM aligned CPTAC3 45d5dac7-ff6a-42f1-92a2-9521a4fad790 0d2c936fb05073b1903a7a85f25c3942 {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor"} -C3L-00079.WXS.T.hg38 C3L-00079 CCRCC WXS tumor CPT0001260005 edc8a006-f1d6-44c5-a097-02792f48391c_gdc_realn.bam 40786462717 BAM harmonized CPTAC3 a0b56912-d3f5-43c6-b105-47fb7e936580 b0f5b783cdcaf5764b66e86f56d7a92f {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor"} -C3L-00080.MethArray.Green.A C3L-00080 LUAD Methylation_Array tissue_normal CPT0001070009 203027390091_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e8daa52-8fea-4ab4-bb04-a372c5aa7151 c9e5c55c4a73d56fd400cb826269a433 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.MethArray.Green.T C3L-00080 LUAD Methylation_Array tumor CPT0001060005 201557560050_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 729981ed-3612-4da1-9f2a-b22b87ccb154 49d69501552c3e0cf6e3128aa4e79ed5 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor"} -C3L-00080.MethArray.Red.A C3L-00080 LUAD Methylation_Array tissue_normal CPT0001070009 203027390091_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 dfadb10b-f081-4e37-8d95-24a1131c22d0 4ff2dd332795ee7dbd2ce16dc57f496c {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.MethArray.Red.T C3L-00080 LUAD Methylation_Array tumor CPT0001060005 201557560050_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 2241c633-bcc6-45a4-b7c7-c35b57b81481 c33015317b967b3fc9ddcf92786f1d11 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor"} -C3L-00080.miRNA-Seq.A.hg38 C3L-00080 LUAD miRNA-Seq tissue_normal CPT0001070006 05107a4e-d208-4225-b989-59483fb418e5_mirnaseq_gdc_realn.bam 176936079 BAM harmonized CPTAC3 2a856858-385a-42fa-8b28-a476db62ef7e 1c4b6fd76599d25676268013a6eef49a {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.miRNA-Seq.S26_L004_R1.T C3L-00080 LUAD miRNA-Seq tumor CPT0001060164 181113_UNC31-K00269_0164_AH23NNBBXY_CGATGT_S26_L004_R1_001.unaln.bam 283629343 BAM S26_L004_R1 unaligned CPTAC3 a46a435b-8cab-46cc-bec5-ae1b68151577 b09195618085737bcd3f1a685f40bac3 {"aliquot_tag": "ALQ_6105a871", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00080.miRNA-Seq.S48_L002_R1.A C3L-00080 LUAD miRNA-Seq tissue_normal CPT0001070006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGGCA_S48_L002_R1_001.unaln.bam 158219058 BAM S48_L002_R1 unaligned CPTAC3 50568e06-a30e-4e0f-b4c5-b02f3e8cd8bf 4d1066462c69e5b55733b2a5c3e87717 {"aliquot_tag": "ALQ_e5f32d5c", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.miRNA-Seq.T.hg38 C3L-00080 LUAD miRNA-Seq tumor CPT0001060164 d06c2bcf-456a-4837-abe8-82c5ac7813cb_mirnaseq_gdc_realn.bam 307074111 BAM harmonized CPTAC3 fd9fc68c-db05-4978-914c-6b983431f86e 0c25309ef384afd393fff6e6f0cda22f {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor"} -C3L-00080.RNA-Seq.chimeric.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.chimeric.gdc_realn.bam 47170794 BAM chimeric harmonized CPTAC3 320a1fa4-0064-4823-a65e-a05e9effa70e 2f23ca9eaa4bd31d532b54314298ab86 {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.RNA-Seq.chimeric.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.chimeric.gdc_realn.bam 101277625 BAM chimeric harmonized CPTAC3 626bb6d6-0208-4320-862d-c7f3255659c9 274e0088acbbd88c247997d9c966d7d3 {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor"} -C3L-00080.RNA-Seq.genomic.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.genomic.gdc_realn.bam 7880695095 BAM genomic harmonized CPTAC3 0862eb68-daeb-4f61-8eb2-b41a8a99d0ef 5f9a08e9e64e342fcc9b12e146a1cbf5 {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.RNA-Seq.genomic.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.genomic.gdc_realn.bam 8365092954 BAM genomic harmonized CPTAC3 5cb3859a-bcd6-42f9-b243-c4987a9d5425 f4ce533c16f1dbcd799a068713227b36 {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor"} -C3L-00080.RNA-Seq.S8_L003_R1.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R1_001.fastq.gz 3788888230 FASTQ S8_L003_R1 unaligned CPTAC3 e3b3eb09-d63a-405e-a75c-3f702efa99b5 8adc24bb5a64f3f5cca5a4087d7412b6 {"aliquot_tag": "ALQ_e5f32d5c", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.RNA-Seq.S8_L003_R2.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R2_001.fastq.gz 3994850528 FASTQ S8_L003_R2 unaligned CPTAC3 24c67435-65d7-40b6-9797-98c2cff545a8 9a10a3a59aa4d54b7f007e8703f378f4 {"aliquot_tag": "ALQ_e5f32d5c", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.RNA-Seq.S9_L003_R1.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R1_001.fastq.gz 3470721198 FASTQ S9_L003_R1 unaligned CPTAC3 5f907873-df4e-4a39-8a9d-93ac9dc6b092 94d499e0aab28e26d1086b484ac95020 {"aliquot_tag": "ALQ_6105a871", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00080.RNA-Seq.S9_L003_R2.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R2_001.fastq.gz 3858897033 FASTQ S9_L003_R2 unaligned CPTAC3 8e3ee723-f497-403e-bdef-b8740041fcb2 f7c97492250d184db634ccfdb63368f0 {"aliquot_tag": "ALQ_6105a871", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00080.RNA-Seq.transcriptome.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.transcriptome.gdc_realn.bam 9682153173 BAM transcriptome harmonized CPTAC3 a9798e6c-60e3-4eda-8b64-705e4662a6e5 361a906340bbba92d9614aa8909eb8be {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.RNA-Seq.transcriptome.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.transcriptome.gdc_realn.bam 8178279137 BAM transcriptome harmonized CPTAC3 52ddd213-2ad9-452f-b7c2-4065c106c94c 6cb015c120ed9e368216fff57ae33368 {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor"} -C3L-00080.WGS.A C3L-00080 LUAD WGS tissue_normal CPT0001070009 CPT0001070009.WholeGenome.RP-1303.bam 81206900517 BAM aligned CPTAC3 081a8d4d-792e-4a5b-af7a-8bd1d2e0963d afaea3669492bd7548772a2257c2a672 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.WGS.A.hg38 C3L-00080 LUAD WGS tissue_normal CPT0001070009 367111cb-498a-48db-8c12-5fb198c1f435_wgs_gdc_realn.bam 119427123874 BAM harmonized CPTAC3 39a75785-7d97-4ddc-9b7e-1b847d72e8e3 9af0c03f17216eb4979f84bfaad0ae88 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.WGS.N C3L-00080 LUAD WGS blood_normal CPT0000020163 CPT0000020163.WholeGenome.RP-1303.bam 136776714049 BAM aligned CPTAC3 31525b12-5d4d-40a2-a544-5e66ecc5a842 b9087d8cf3e0e3a41b22af3a86612d3b {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00080.WGS.N.hg38 C3L-00080 LUAD WGS blood_normal CPT0000020163 0884b190-2818-4687-9507-a6f34883c932_gdc_realn.bam 200634122075 BAM harmonized CPTAC3 9b0719f5-2549-466c-892c-df316fff7fe0 3c454203cd1b698fb4884af99f696ff4 {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00080.WGS.T C3L-00080 LUAD WGS tumor CPT0001060005 CPT0001060005.WholeGenome.RP-1303.bam 151394529400 BAM aligned CPTAC3 09c1eda8-63d4-4661-9b58-73b4a5115d0a e0b646ef749439aaaf8142993c505d9e {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor"} -C3L-00080.WGS.T.hg38 C3L-00080 LUAD WGS tumor CPT0001060005 402105a0-263d-474b-b32d-11a7ad92150f_gdc_realn.bam 217796501697 BAM harmonized CPTAC3 7b17e10f-1802-41a3-9d39-98d7f4f7ab40 8905b1a0a0723c234ae09de2cc0f0b23 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor"} -C3L-00080.WXS.A C3L-00080 LUAD WXS tissue_normal CPT0001070009 CPT0001070009.WholeExome.RP-1303.bam 38874016782 BAM aligned CPTAC3 914fe34c-9b40-45e0-9cf5-3aadc855e414 44ef2fe8ba3595d2cb7023f642d3754b {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.WXS.A.hg38 C3L-00080 LUAD WXS tissue_normal CPT0001070009 367111cb-498a-48db-8c12-5fb198c1f435_wxs_gdc_realn.bam 52841811322 BAM harmonized CPTAC3 b368558a-16fa-471a-8260-ec289700b984 25fb56e520438fb6004f8ebd70484095 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00080.WXS.N C3L-00080 LUAD WXS blood_normal CPT0000020163 CPT0000020163.WholeExome.RP-1303.bam 32862065320 BAM aligned CPTAC3 65d0559a-983e-4e87-a69d-d62cfac912c0 913df0d6546cddfcc02210a89c98809e {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00080.WXS.N.hg38 C3L-00080 LUAD WXS blood_normal CPT0000020163 0884b190-2818-4687-9507-a6f34883c932_gdc_realn.bam 47252445993 BAM harmonized CPTAC3 9412b5eb-4f3d-4c16-9901-fac1b339da5f 4097cdad785c1d1d39fa282ea924a79a {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00080.WXS.T C3L-00080 LUAD WXS tumor CPT0001060005 CPT0001060005.WholeExome.RP-1303.bam 35658339910 BAM aligned CPTAC3 7acc6d0a-8ba6-442b-9f43-001038cc8bd9 bcefb326dc0d016f3a528d3a0cc2f7a5 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor"} -C3L-00080.WXS.T.hg38 C3L-00080 LUAD WXS tumor CPT0001060005 402105a0-263d-474b-b32d-11a7ad92150f_gdc_realn.bam 49069409933 BAM harmonized CPTAC3 af55e269-a75d-4392-9d5d-96faf2c0e04e 3c0b06c3a98766b4772126c864d25cda {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor"} -C3L-00081.MethArray.Green.A C3L-00081 LSCC Methylation_Array tissue_normal CPT0001030006 203219650157_R02C01_Grn.idat 13676223 IDAT Green NA CPTAC3 fe9c627b-314b-490a-991b-0d6375d7cbd6 921769b8ff67dca61223061a8e644253 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.MethArray.Green.T C3L-00081 LSCC Methylation_Array tumor CPT0001020005 201557560049_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 357449ad-f612-4325-beae-8a1427c252f8 d255a747dfb693cb2ab877b9c8f58a56 {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor"} -C3L-00081.MethArray.Red.A C3L-00081 LSCC Methylation_Array tissue_normal CPT0001030006 203219650157_R02C01_Red.idat 13676223 IDAT Red NA CPTAC3 78941176-9350-4b80-8dee-0c58a5cbd65b cfcfb5dabefe5d17802e5a0fc8cd83f4 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.MethArray.Red.T C3L-00081 LSCC Methylation_Array tumor CPT0001020005 201557560049_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 377de132-5df6-4bb3-aa26-334f984beb9c 562f3d069e3da47b711004b9e3997ce4 {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor"} -C3L-00081.miRNA-Seq.A.hg38 C3L-00081 LSCC miRNA-Seq tissue_normal CPT0001030009 ed82f2d1-eec1-4b9c-b734-bbdd0269b5c2_mirnaseq_gdc_realn.bam 217130182 BAM harmonized CPTAC3 5b303069-5a95-4cf0-a3c5-72405d286f8f 11d69d42b04fd40edcab4786d82f86d2 {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.miRNA-Seq.S36_L006_R1.A C3L-00081 LSCC miRNA-Seq tissue_normal CPT0001030009 181113_UNC31-K00269_0164_AH23NNBBXY_CTTGTA_S36_L006_R1_001.unaln.bam 189354960 BAM S36_L006_R1 unaligned CPTAC3 b37bf8e5-f653-4fd7-a5d7-26c8ec5b8cb1 b59441eb7925fc4829dae656742394ab {"aliquot_tag": "ALQ_80cc960d", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.miRNA-Seq.S4_L005_R1.T C3L-00081 LSCC miRNA-Seq tumor CPT0001020164 181119_UNC31-K00269_0165_AH27WCBBXY_CAAAAG_S4_L005_R1_001.unaln.bam 243860495 BAM S4_L005_R1 unaligned CPTAC3 bdff1579-a29f-4d82-829a-11008222efde 1ccf5244604c2c5c93965d280e79f610 {"aliquot_tag": "ALQ_94850eb1", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00081.miRNA-Seq.T.hg38 C3L-00081 LSCC miRNA-Seq tumor CPT0001020164 fab1e2b2-6cdf-4c57-bcb5-a471707cded4_mirnaseq_gdc_realn.bam 264975107 BAM harmonized CPTAC3 4e533072-0f76-49f6-a9a7-35cc549f3b2a 7c7f0b5382e9b99f5c374dad5ad398c4 {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor"} -C3L-00081.RNA-Seq.chimeric.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.chimeric.gdc_realn.bam 40154720 BAM chimeric harmonized CPTAC3 e2497a1b-9ce0-437a-af72-5931bf3365a0 fd59a502b286a5cc1ed424af706a0e0d {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.RNA-Seq.chimeric.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.chimeric.gdc_realn.bam 90588319 BAM chimeric harmonized CPTAC3 fef44227-e37d-4475-9f7e-9b9d1f67a959 1eec1a997cfd8db67d2cf92e8d9af339 {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor"} -C3L-00081.RNA-Seq.genomic.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.genomic.gdc_realn.bam 7538796519 BAM genomic harmonized CPTAC3 dc3b683c-5afe-48e8-bc0d-2db0168438b1 9ae288caa90b448ca5f4f9078b6b3791 {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.RNA-Seq.genomic.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.genomic.gdc_realn.bam 8439583099 BAM genomic harmonized CPTAC3 07efac59-ec65-41cc-91de-de2db3e51c95 59f694ee679475388d00345d8bb38d31 {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor"} -C3L-00081.RNA-Seq.S11_L003_R1.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R1_001.fastq.gz 3939456591 FASTQ S11_L003_R1 unaligned CPTAC3 3421ad64-9741-4c1a-8566-1ed87be793ed 9208224ed41c98ee20b39ca69eaaf50b {"aliquot_tag": "ALQ_94850eb1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00081.RNA-Seq.S11_L003_R2.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R2_001.fastq.gz 4356640891 FASTQ S11_L003_R2 unaligned CPTAC3 5bbe2459-83d0-4ec4-af3d-349c07dd3ef6 fd7b61a3b8f36f69582676b21d4b1df6 {"aliquot_tag": "ALQ_94850eb1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00081.RNA-Seq.S20_L005_R1.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3654893099 FASTQ S20_L005_R1 unaligned CPTAC3 c6af85e7-26e8-4b47-b8af-dde2bec71986 fa7b748c426c7c571a2b2680d9a99a90 {"aliquot_tag": "ALQ_80cc960d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.RNA-Seq.S20_L005_R2.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3975945919 FASTQ S20_L005_R2 unaligned CPTAC3 baa8c044-0465-4621-ad86-59a7fc812b9f 32105850f51c90749cdfe503156e32d7 {"aliquot_tag": "ALQ_80cc960d", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.RNA-Seq.transcriptome.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.transcriptome.gdc_realn.bam 9853763645 BAM transcriptome harmonized CPTAC3 0e640400-21fb-421d-895e-29167dae72ca 3315fcafdff0a40df0dd5cc65bfe51f0 {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.RNA-Seq.transcriptome.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.transcriptome.gdc_realn.bam 11092790707 BAM transcriptome harmonized CPTAC3 ebf3c06f-092e-465e-9f47-5a20dc208640 11fe9019b59a6bcfe595434af0db72fb {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor"} -C3L-00081.WGS.A C3L-00081 LSCC WGS tissue_normal CPT0001030006 CPT0001030006.WholeGenome.RP-1303.bam 62530201240 BAM aligned CPTAC3 fd9c0561-e0b3-40c7-9adc-47a733e3e602 f2c086f7bf42366b2592b7a3490f2583 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.WGS.A.hg38 C3L-00081 LSCC WGS tissue_normal CPT0001030006 48433c5e-7746-4ae8-888a-3c9390b460d4_wgs_gdc_realn.bam 91867368039 BAM harmonized CPTAC3 c7de8530-f1ff-412e-8553-2f44dec09d49 c5c7a6c15cb28a25e8ce326b2d83ceb6 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.WGS.N C3L-00081 LSCC WGS blood_normal CPT0000010163 CPT0000010163.WholeGenome.RP-1303.bam 131968017841 BAM aligned CPTAC3 129e9b57-07c7-46d2-bc85-a33e58416247 f7f67b09904671f331e3168baac99093 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00081.WGS.N.hg38 C3L-00081 LSCC WGS blood_normal CPT0000010163 5e04faec-58e8-403f-942b-74e8c0053805_gdc_realn.bam 191650804479 BAM harmonized CPTAC3 4571e0d7-4c43-4ff8-aad2-f39bc4964cdf faa00b5450c027cd03c9235a4534c9b3 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00081.WGS.T C3L-00081 LSCC WGS tumor CPT0001020005 CPT0001020005.WholeGenome.RP-1303.bam 147973966366 BAM aligned CPTAC3 2169ab4f-5ca7-4f89-bca2-5cfd0e960adf 92d6c62a8a003542b1ba60d71993928b {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor"} -C3L-00081.WGS.T.hg38 C3L-00081 LSCC WGS tumor CPT0001020005 499d2ebb-679e-4720-8b86-3c989769d905_gdc_realn.bam 211055991444 BAM harmonized CPTAC3 cb4885fd-11cd-4eca-a876-35c74daf9feb 291cc8acd5d6259d368f514da09100fe {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor"} -C3L-00081.WXS.A C3L-00081 LSCC WXS tissue_normal CPT0001030006 CPT0001030006.WholeExome.RP-1303.bam 24579287594 BAM aligned CPTAC3 d93074c7-fe17-4586-ace5-b96ee03fcbcc 323d218052f4ed215a05efcf92b8be5d {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.WXS.A.hg38 C3L-00081 LSCC WXS tissue_normal CPT0001030006 48433c5e-7746-4ae8-888a-3c9390b460d4_wxs_gdc_realn.bam 33131414600 BAM harmonized CPTAC3 97148966-d2a9-414e-900b-7016bedf7075 07352ff0f6796f32189b69aed68a8e10 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00081.WXS.N C3L-00081 LSCC WXS blood_normal CPT0000010163 CPT0000010163.WholeExome.RP-1303.bam 27469447105 BAM aligned CPTAC3 8ee1153c-e13c-44e9-bc43-cc3503a0eb02 d345efbc6063857e337dbb145d525da0 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00081.WXS.N.hg38 C3L-00081 LSCC WXS blood_normal CPT0000010163 5e04faec-58e8-403f-942b-74e8c0053805_gdc_realn.bam 39312702311 BAM harmonized CPTAC3 ec948c00-910b-4c7b-82a7-4d209d377116 f49ba5dc8c8d17dab14f5fd156189351 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00081.WXS.T C3L-00081 LSCC WXS tumor CPT0001020005 CPT0001020005.WholeExome.RP-1303.bam 38606355959 BAM aligned CPTAC3 529c8f32-fe2c-46b4-a853-587e5b738cac b8a7512c320d6e18b9993037d10caba9 {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor"} -C3L-00081.WXS.T.hg38 C3L-00081 LSCC WXS tumor CPT0001020005 499d2ebb-679e-4720-8b86-3c989769d905_gdc_realn.bam 52293773887 BAM harmonized CPTAC3 16477a75-08b9-4c77-9117-30dbb59d9f84 7b90eaacf6adb2fd777331487c1533ff {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor"} -C3L-00083.MethArray.Green.A C3L-00083 LUAD Methylation_Array tissue_normal CPT0091870009 203028200101_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 7bcc51bd-364a-4861-9d0d-1d7b59c796d0 861f4b66c68f591fec70837557a3ee32 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.MethArray.Green.T C3L-00083 LUAD Methylation_Array tumor CPT0091860013 202234380051_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c7995185-55a6-4f7f-9bbc-019fa7cc6878 a7c4911cbe36790166a67926eb111854 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor"} -C3L-00083.MethArray.Red.A C3L-00083 LUAD Methylation_Array tissue_normal CPT0091870009 203028200101_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 5772bfa3-9607-4e20-8d87-b335a6859a04 96bf555d2cc4dca73dc4b9f73c1dbea0 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.MethArray.Red.T C3L-00083 LUAD Methylation_Array tumor CPT0091860013 202234380051_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 eb0c248d-0734-4c1d-81bb-ab422452c614 5c8ed709e3695970e74aef3618796407 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor"} -C3L-00083.miRNA-Seq.A.hg38 C3L-00083 LUAD miRNA-Seq tissue_normal CPT0091870006 329e0523-ffcb-4ab6-ae07-db3ce2b6a586_mirnaseq_gdc_realn.bam 186261081 BAM harmonized CPTAC3 526ce0ef-dc4b-409b-b24c-fa488604b2ca 2642821e65bd31eab73d7b0ff02f1c06 {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.miRNA-Seq.S42_L002_R1.A C3L-00083 LUAD miRNA-Seq tissue_normal CPT0091870006 181108_UNC31-K00269_0163_BH23TVBBXY_TAATCG_S42_L002_R1_001.unaln.bam 166140861 BAM S42_L002_R1 unaligned CPTAC3 a90836a6-a2aa-4476-bbb6-8bd35e08b1b1 7b557cd714c72b10a4732469373581ca {"aliquot_tag": "ALQ_16efb41a", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.miRNA-Seq.S4_L006_R1.T C3L-00083 LUAD miRNA-Seq tumor CPT0091860006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTTGTA_S4_L006_R1_001.unaln.bam 210792312 BAM S4_L006_R1 unaligned CPTAC3 256f98a0-d3f7-4a5d-8941-69d5c73e49fa 277e88cc403c6f40061f0be8bad6ba9e {"aliquot_tag": "ALQ_2b8f9daa", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00083.miRNA-Seq.T.hg38 C3L-00083 LUAD miRNA-Seq tumor CPT0091860006 af1a7521-0fcd-4b95-a4ac-eb5250f78b5f_mirnaseq_gdc_realn.bam 234458225 BAM harmonized CPTAC3 862b8f68-36c9-4926-babc-5f3fcdc0f2e7 97a09bf11ff240f4e9074f6b9a417e02 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor"} -C3L-00083.RNA-Seq.chimeric.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.chimeric.gdc_realn.bam 40485528 BAM chimeric harmonized CPTAC3 8369df40-4495-4385-adf6-5b6b9625d6af eed157666e65803d583cb5970cf395ef {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.RNA-Seq.chimeric.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.chimeric.gdc_realn.bam 25066864 BAM chimeric harmonized CPTAC3 701fda35-1f6a-4b46-a55e-06fe71be9ac5 9fde023653449ca754e945e7a8af0221 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor"} -C3L-00083.RNA-Seq.genomic.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.genomic.gdc_realn.bam 6926438730 BAM genomic harmonized CPTAC3 5272ec5e-96fb-496d-9218-6057ccd7003f dcbb5f05e37d03e184c24d91f2b13c9d {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.RNA-Seq.genomic.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.genomic.gdc_realn.bam 9498180816 BAM genomic harmonized CPTAC3 2c30bab8-1ecd-4fbc-8469-adfb8244b54e 76d8c783b8b3f6f8634817f294c33d11 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor"} -C3L-00083.RNA-Seq.S23_L006_R1.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 3073545641 FASTQ S23_L006_R1 unaligned CPTAC3 547747fd-bc4e-48f7-9b6d-cbd97b09c44a 98aeed38e3184adcbc4915e5e73b18cf {"aliquot_tag": "ALQ_16efb41a", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.RNA-Seq.S23_L006_R2.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 3050945016 FASTQ S23_L006_R2 unaligned CPTAC3 9eb82bcc-2f71-42bd-b81c-dcce5574e105 dcb98f613af8764bf818240691a868f5 {"aliquot_tag": "ALQ_16efb41a", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.RNA-Seq.S7_L008_R1.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 3238569706 FASTQ S7_L008_R1 unaligned CPTAC3 2c84bd2a-e9a9-4217-add6-56698c1c2a4f ac0a4d00d8b2a5ef0948a7341628bb59 {"aliquot_tag": "ALQ_2b8f9daa", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00083.RNA-Seq.S7_L008_R2.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 3504350542 FASTQ S7_L008_R2 unaligned CPTAC3 869eced6-9373-4cf5-92f9-a3dc8cad7110 b25f8190cc6991bac89871d02ced1794 {"aliquot_tag": "ALQ_2b8f9daa", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00083.RNA-Seq.transcriptome.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.transcriptome.gdc_realn.bam 6789029029 BAM transcriptome harmonized CPTAC3 bfdce880-dd1c-4447-bcac-60f622493b6c e2fbb2f0d8d49a3cf5b0d688e44f8436 {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.RNA-Seq.transcriptome.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.transcriptome.gdc_realn.bam 6992588266 BAM transcriptome harmonized CPTAC3 53f5a336-e4fe-4de8-9cbf-5d04413a9b5f 0b2f92a28043dd370a80f1f73d9037c7 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor"} -C3L-00083.WGS.A C3L-00083 LUAD WGS tissue_normal CPT0091870009 CPT0091870009.WholeGenome.RP-1303.bam 59141030706 BAM aligned CPTAC3 08a47d22-0245-4c34-9fd1-aaf65df2c403 e117a98905fad9e3c1f62fa77b8c537c {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.WGS.A.hg38 C3L-00083 LUAD WGS tissue_normal CPT0091870009 6aa4d1fe-35eb-4db1-9427-3398beedae1d_wgs_gdc_realn.bam 86037221741 BAM harmonized CPTAC3 8535bce5-31d8-4f7b-bbb7-ef9ed49c1517 5b5900863d6617530cac0ca56be77c20 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.WGS.N C3L-00083 LUAD WGS blood_normal CPT0093680002 CPT0093680002.WholeGenome.RP-1303.bam 66659002937 BAM aligned CPTAC3 a536a599-9dbc-477a-a179-1254a1cb5229 fbf4b3adc19aa6988a03717f04404ec1 {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00083.WGS.N.hg38 C3L-00083 LUAD WGS blood_normal CPT0093680002 2eddaefa-786d-42e4-ab02-e94a893a9441_wgs_gdc_realn.bam 97867709363 BAM harmonized CPTAC3 7ac479d6-5d12-4169-9908-a789d8fbe546 b4fd74622e2a415ccb82a4777dd35791 {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00083.WGS.T C3L-00083 LUAD WGS tumor CPT0091860013 CPT0091860013.WholeGenome.RP-1303.bam 65973252809 BAM aligned CPTAC3 932d3bfb-76b6-43da-89cb-97cded9be3de 47eca33968ba334c88edc63a3ec6ca36 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor"} -C3L-00083.WGS.T.hg38 C3L-00083 LUAD WGS tumor CPT0091860013 560018e3-da42-4581-b77d-db661cb3a7b4_wgs_gdc_realn.bam 96680796121 BAM harmonized CPTAC3 e1ea371a-d8a3-4b25-aee2-a384da065956 d16d711a031ec870eb0e13f60f513e9b {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor"} -C3L-00083.WXS.A C3L-00083 LUAD WXS tissue_normal CPT0091870009 CPT0091870009.WholeExome.RP-1303.bam 30889783270 BAM aligned CPTAC3 433c0bce-9668-42e0-9664-dcfc56e024eb 10f8e2bb8d7568a2d0e2c8d2ae2bdebd {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.WXS.A.hg38 C3L-00083 LUAD WXS tissue_normal CPT0091870009 6aa4d1fe-35eb-4db1-9427-3398beedae1d_wxs_gdc_realn.bam 41385747481 BAM harmonized CPTAC3 fe5bbd2e-0ea2-423b-8d37-55760086ffd7 400aa90e1a7a220998c657f7371a2722 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00083.WXS.N C3L-00083 LUAD WXS blood_normal CPT0093680002 CPT0093680002.WholeExome.RP-1303.bam 38852616278 BAM aligned CPTAC3 0295a093-ad8d-4062-8742-62fd6a81066d 56d43baae8c10b24c10419c5a52f94ca {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00083.WXS.N.hg38 C3L-00083 LUAD WXS blood_normal CPT0093680002 2eddaefa-786d-42e4-ab02-e94a893a9441_wxs_gdc_realn.bam 51977545772 BAM harmonized CPTAC3 eb54888f-3169-491f-a385-0bbe85db98b3 f6aa032768b8e4718df4183b96d334c9 {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00083.WXS.T C3L-00083 LUAD WXS tumor CPT0091860013 CPT0091860013.WholeExome.RP-1303.bam 28072671557 BAM aligned CPTAC3 79089e6c-52a2-4d25-b3e4-e5830e3d6a87 d905106a65f5bf14535563034c63af15 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor"} -C3L-00083.WXS.T.hg38 C3L-00083 LUAD WXS tumor CPT0091860013 560018e3-da42-4581-b77d-db661cb3a7b4_wxs_gdc_realn.bam 38196988685 BAM harmonized CPTAC3 abcf3517-4f77-450e-8bbd-bd7bb7f40077 b32986eb2118352d97d386f6d44011f8 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor"} -C3L-00086.MethArray.Green.T C3L-00086 UCEC Methylation_Array tumor CPT0092460009 202234380064_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 daa042f4-bc3f-4ade-90fc-ec2f7d9e4761 dad11ef067eb42f44537035f5df1cd99 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor"} -C3L-00086.MethArray.Red.T C3L-00086 UCEC Methylation_Array tumor CPT0092460009 202234380064_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 45573c0d-dcf2-4ccc-a349-8eccefabcde2 28aeec7520ee22ef04551f8abc1f1e7c {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor"} -C3L-00086.miRNA-Seq.S11_L007_R1.T C3L-00086 UCEC miRNA-Seq tumor CPT0092460006 180724_UNC32-K00270_0106_BHWK3MBBXX_CATTTT_S11_L007_R1_001.unaln.bam 225683753 BAM S11_L007_R1 unaligned CPTAC3 f65c15fb-bfbd-46dc-8419-a358ccd647bf de9a591aeab42b85dfe67131a67504b6 {"aliquot_tag": "ALQ_6da5474c", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00086.miRNA-Seq.T.hg38 C3L-00086 UCEC miRNA-Seq tumor CPT0092460006 413bfaf5-6d1f-4a6b-8963-1225aff596b8_mirnaseq_gdc_realn.bam 244045794 BAM harmonized CPTAC3 e4b723b7-48a5-4d16-983e-381d38aab3be 7274089c3619eb0fc93ee9d89fc4d503 {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor"} -C3L-00086.RNA-Seq.chimeric.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.chimeric.gdc_realn.bam 43467899 BAM chimeric harmonized CPTAC3 8eea6359-4603-41a5-8091-25d7f1a08178 af9ba6fb8aa490410f00e324b5b8d875 {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor"} -C3L-00086.RNA-Seq.genomic.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.genomic.gdc_realn.bam 9340732260 BAM genomic harmonized CPTAC3 db6c9174-014c-41a0-bd95-8b8ca31f5b11 cf7c34261c5856d3240dd33cdacf0a2d {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor"} -C3L-00086.RNA-Seq.S17_L005_R1.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4232488401 FASTQ S17_L005_R1 unaligned CPTAC3 22637e03-59ca-4f1d-9b27-8fd59c36a403 f34884fc23fb7a4bf6044b725adc9cfa {"aliquot_tag": "ALQ_6da5474c", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00086.RNA-Seq.S17_L005_R2.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836114269 FASTQ S17_L005_R2 unaligned CPTAC3 a7f4b09e-21e5-4cff-b9ca-65af1932bf52 ac60929b8028f142898547c42ee3c5d8 {"aliquot_tag": "ALQ_6da5474c", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00086.RNA-Seq.transcriptome.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.transcriptome.gdc_realn.bam 10967522496 BAM transcriptome harmonized CPTAC3 a9e406ba-64d5-4463-9f2a-fef78f742a2b 9badc039019bf5abfdf9ca130be648c4 {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor"} -C3L-00086.WGS.N C3L-00086 UCEC WGS blood_normal CPT0093790002 CPT0093790002.WholeGenome.RP-1303.bam 62749203339 BAM aligned CPTAC3 8967dbcf-5b6b-4b39-a1d7-956b2af1546c 0353b6cc47c6174f3b9b0f0e53472194 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00086.WGS.N.hg38 C3L-00086 UCEC WGS blood_normal CPT0093790002 8fc6c425-9cb5-49f4-86da-ea1361e7a692_wgs_gdc_realn.bam 92368698049 BAM harmonized CPTAC3 5001f32e-96d1-4307-82d2-5eea376f4c5c bffa423070913bc443f9907877aa7286 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00086.WGS.T C3L-00086 UCEC WGS tumor CPT0092460009 CPT0092460009.WholeGenome.RP-1303.bam 62461041923 BAM aligned CPTAC3 d11bb755-9622-4be1-95f0-39d4fcc9574e b87abbed624c53ac9c555635e59e3114 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor"} -C3L-00086.WGS.T.hg38 C3L-00086 UCEC WGS tumor CPT0092460009 5eebe409-6c81-40fa-a496-e1fa53b2de64_wgs_gdc_realn.bam 91710617793 BAM harmonized CPTAC3 36c203cf-6035-41da-909d-466fc33a4315 7f3c1ea120969f720bce1f15c3f49751 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor"} -C3L-00086.WXS.N C3L-00086 UCEC WXS blood_normal CPT0093790002 CPT0093790002.WholeExome.RP-1303.bam 31710495865 BAM aligned CPTAC3 cb8e6606-ef3e-4733-a971-a8bca87139d0 2243f9cc3f7b7a67631e448a4b08c3f8 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00086.WXS.N.hg38 C3L-00086 UCEC WXS blood_normal CPT0093790002 8fc6c425-9cb5-49f4-86da-ea1361e7a692_wxs_gdc_realn.bam 43409145736 BAM harmonized CPTAC3 7df67033-820f-4c6c-acf8-648c2aa6a43d e2732af814c7b395aec73874295a76e5 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00086.WXS.T C3L-00086 UCEC WXS tumor CPT0092460009 CPT0092460009.WholeExome.RP-1303.bam 41210403101 BAM aligned CPTAC3 6a22bae2-7150-4632-b422-0d68cd2cfb2d 229399d2a77e2845644273b86320cff4 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor"} -C3L-00086.WXS.T.hg38 C3L-00086 UCEC WXS tumor CPT0092460009 5eebe409-6c81-40fa-a496-e1fa53b2de64_wxs_gdc_realn.bam 55911276874 BAM harmonized CPTAC3 5c26bc75-efc0-4a98-8eef-0e9882478b64 60876c39406df617e030103e1e2032b7 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor"} -C3L-00088.MethArray.Green.A C3L-00088 CCRCC Methylation_Array tissue_normal CPT0000890014 204930630114_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 eb13be6d-11ee-4f45-a05b-2a569b32cfe8 8f83dda9c2aab9ad10b26027a0f91da6 {"aliquot_tag": "ALQ_e7f24a89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.MethArray.Green.T C3L-00088 CCRCC Methylation_Array tumor CPT0000870012 201557540017_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6f821204-66ed-48c3-83fe-f5ac9837147a df5d45d1f0c027799824e8c6b05c73a3 {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor"} -C3L-00088.MethArray.Red.A C3L-00088 CCRCC Methylation_Array tissue_normal CPT0000890014 204930630114_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 16117f02-1315-4a29-9f63-e5b63c62b2f1 2de0bcfece08eb758984400ee4b5b8ab {"aliquot_tag": "ALQ_e7f24a89", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.MethArray.Red.T C3L-00088 CCRCC Methylation_Array tumor CPT0000870012 201557540017_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 48979e81-0e72-40a3-b494-29ad6dcde119 3521aca6a8307d2d1d8cea9af60aadad {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor"} -C3L-00088.miRNA-Seq.A.hg38 C3L-00088 CCRCC miRNA-Seq tissue_normal CPT0000890006 764c25b1-67ec-49ea-b413-0e53393c692b_mirnaseq_gdc_realn.bam 225236823 BAM harmonized CPTAC3 457c8990-aad2-4d84-98dd-ce86d7eeff60 6831fa79609add0828d1c4ef0b5e27f1 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.miRNA-Seq.S29_L004_R1.A C3L-00088 CCRCC miRNA-Seq tissue_normal CPT0000890006 181108_UNC31-K00269_0163_BH23TVBBXY_CAACTA_S29_L004_R1_001.unaln.bam 203108666 BAM S29_L004_R1 unaligned CPTAC3 be7d571e-56fc-48f1-a6d3-fdedf541405b 24fad37fa23ebd12e039b3de6779dbeb {"aliquot_tag": "ALQ_10e71ae4", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.miRNA-Seq.S41_L002_R1.T C3L-00088 CCRCC miRNA-Seq tumor CPT0000870008 181113_UNC31-K00269_0164_AH23NNBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 295188721 BAM S41_L002_R1 unaligned CPTAC3 44cac622-9968-4206-9315-8c78488cb556 33c28355789a49fb8d11f7ed17959744 {"aliquot_tag": "ALQ_486f8982", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00088.miRNA-Seq.T.hg38 C3L-00088 CCRCC miRNA-Seq tumor CPT0000870008 2572e684-0287-4944-8956-cf2e2fd5b8c6_mirnaseq_gdc_realn.bam 323712065 BAM harmonized CPTAC3 2822be11-83da-4549-9745-a152a251b43f 41abe68bea7c6090842bc5ac081cee84 {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor"} -C3L-00088.RNA-Seq.chimeric.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.chimeric.gdc_realn.bam 81939442 BAM chimeric harmonized CPTAC3 2586eaa0-1e9c-4dd5-a985-57589a9be41c 4d6e1d508962643c043297c7b75bfeb0 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.RNA-Seq.chimeric.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.chimeric.gdc_realn.bam 182374354 BAM chimeric harmonized CPTAC3 22bf8200-96fa-41b3-b972-7601b76da9fa a0533b217bb2469cc1f8363a386ad5ef {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor"} -C3L-00088.RNA-Seq.genomic.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.genomic.gdc_realn.bam 7380540524 BAM genomic harmonized CPTAC3 2a90a484-cbbf-4b5a-b842-b4f5d0fe89cd b9490d89eb15bffc9e419d1e910a5622 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.RNA-Seq.genomic.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.genomic.gdc_realn.bam 8489368431 BAM genomic harmonized CPTAC3 d887e09e-3c02-4610-aaac-65fe046d72e2 ce58aed9319414eb2108a57b4d36e7a5 {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor"} -C3L-00088.RNA-Seq.S52_L007_R1.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R1_001.fastq.gz 3646165486 FASTQ S52_L007_R1 unaligned CPTAC3 b48eaeba-39e6-408e-8e4a-6e003e5d945a 6fe1d01d2d7027b3f0844290b0d11d91 {"aliquot_tag": "ALQ_10e71ae4", "sample": "S52", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.RNA-Seq.S52_L007_R2.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R2_001.fastq.gz 3863267802 FASTQ S52_L007_R2 unaligned CPTAC3 28922cc1-1760-4c38-9380-2e9ee349d1c4 d9fac49caf7018d47254cebe6f1a8334 {"aliquot_tag": "ALQ_10e71ae4", "sample": "S52", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.RNA-Seq.S6_L002_R1.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4092217558 FASTQ S6_L002_R1 unaligned CPTAC3 d4bd8d64-d651-43d3-b970-c91274b7526e ff6f617fd3d58d93b437b6e115f921c1 {"aliquot_tag": "ALQ_486f8982", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00088.RNA-Seq.S6_L002_R2.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4594406093 FASTQ S6_L002_R2 unaligned CPTAC3 894c40bf-32d7-470e-9f19-36a62b7e32ba ceeaae5306e39f5c53ea0d85c07e8244 {"aliquot_tag": "ALQ_486f8982", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00088.RNA-Seq.transcriptome.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.transcriptome.gdc_realn.bam 8926608929 BAM transcriptome harmonized CPTAC3 3f852cab-27aa-43e3-8e0c-76239b6273f8 a7880e9462c979af4b7b389127679d85 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.RNA-Seq.transcriptome.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.transcriptome.gdc_realn.bam 10544530884 BAM transcriptome harmonized CPTAC3 d0b2f263-874b-486c-a896-2e419c7c6c13 cc5751e021c3b936209c84dcf9a53ade {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor"} -C3L-00088.WGS.A C3L-00088 CCRCC WGS tissue_normal CPT0000890009 CPT0000890009.WholeGenome.RP-1303.bam 52451092032 BAM aligned CPTAC3 7cbadd0f-b100-4301-99b8-a3ee39999bd5 4ec51dd79d390096839afbf7e8da6740 {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.WGS.A.hg38 C3L-00088 CCRCC WGS tissue_normal CPT0000890009 60bdecd2-bd6f-4e64-a096-798dd3d5d945_wgs_gdc_realn.bam 77216653403 BAM harmonized CPTAC3 8bcbf89a-9b67-4003-ade8-1d46318a987e eb87bf4a280f036574f2a97f5235e2be {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.WGS.N C3L-00088 CCRCC WGS blood_normal CPT0003890002 CPT0003890002.WholeGenome.RP-1303.bam 127153243520 BAM aligned CPTAC3 03bf9f33-4543-44aa-bb88-0563daab731b 8388e91747d78f7d745e2bdb06264f29 {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal"} -C3L-00088.WGS.N.hg38 C3L-00088 CCRCC WGS blood_normal CPT0003890002 eb373147-2131-45e4-9aeb-06151460719b_gdc_realn.bam 187456117528 BAM harmonized CPTAC3 2eab4f64-7391-4465-a4e5-3714178ca4ad ea00518efd3954eb18ee0f80d3d2d42a {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal"} -C3L-00088.WGS.T C3L-00088 CCRCC WGS tumor CPT0000870012 CPT0000870012.WholeGenome.RP-1303.bam 128499240674 BAM aligned CPTAC3 ddd63a0c-60ea-47a1-9ba5-4aa2a5f5a7b4 ab92f4b42f2752a89bcc52d5f2ce1fbf {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor"} -C3L-00088.WGS.T.hg38 C3L-00088 CCRCC WGS tumor CPT0000870012 6d73cfe8-aedb-4984-b7a3-66a9a027d712_gdc_realn.bam 188160006784 BAM harmonized CPTAC3 89662f07-19b9-4dee-802b-810107d0dea5 89bdc97fbb5fbe77d336f84d29005dd9 {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor"} -C3L-00088.WXS.A C3L-00088 CCRCC WXS tissue_normal CPT0000890009 CPT0000890009.WholeExome.RP-1303.bam 40836554083 BAM aligned CPTAC3 dd6daaf0-ecf9-4d71-a561-26456b24c165 67e6d8b15ab93b3316cbf531c96d01fe {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.WXS.A.hg38 C3L-00088 CCRCC WXS tissue_normal CPT0000890009 60bdecd2-bd6f-4e64-a096-798dd3d5d945_wxs_gdc_realn.bam 55282630506 BAM harmonized CPTAC3 6a052578-ac0b-40a3-aa70-80a9ab4540cf ec9967bfb066738831fa08110975df13 {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00088.WXS.N C3L-00088 CCRCC WXS blood_normal CPT0003890002 CPT0003890002.WholeExome.RP-1303.bam 40691725404 BAM aligned CPTAC3 62486955-7ba8-43a2-a5cf-46b03233ec0c c2993aa1ee23e451047445af11cce648 {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal"} -C3L-00088.WXS.N.hg38 C3L-00088 CCRCC WXS blood_normal CPT0003890002 eb373147-2131-45e4-9aeb-06151460719b_gdc_realn.bam 54923303429 BAM harmonized CPTAC3 ad30e491-1dcf-4c3e-8280-01316fcd183d 1394118e8443ab888a2275ef2655f779 {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal"} -C3L-00088.WXS.T C3L-00088 CCRCC WXS tumor CPT0000870012 CPT0000870012.WholeExome.RP-1303.bam 24565533059 BAM aligned CPTAC3 2207df61-a202-49e6-ad31-f89259a53771 f560a50a15f08cf595bbf8222a5e125b {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor"} -C3L-00088.WXS.T.hg38 C3L-00088 CCRCC WXS tumor CPT0000870012 6d73cfe8-aedb-4984-b7a3-66a9a027d712_gdc_realn.bam 34015262331 BAM harmonized CPTAC3 cd13d733-70d0-49de-bdb2-98e9ccf074af 72d1749ba2a6f638d984e0949f2d2e2c {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor"} -C3L-00090.MethArray.Green.T C3L-00090 UCEC Methylation_Array tumor CPT0001140005 201557560056_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2e90f820-39f9-4485-9c3f-72b8f3d5526b 6d9a997df815c9b2771d66848efed0c4 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor"} -C3L-00090.MethArray.Red.T C3L-00090 UCEC Methylation_Array tumor CPT0001140005 201557560056_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 fb420c34-1c43-4c6b-9d69-6c4cf9694e65 f7f232da4b473670cff76001f00c9a48 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor"} -C3L-00090.miRNA-Seq.S27_L004_R1.T C3L-00090 UCEC miRNA-Seq tumor CPT0001140164 181113_UNC31-K00269_0164_AH23NNBBXY_TTAGGC_S27_L004_R1_001.unaln.bam 207505667 BAM S27_L004_R1 unaligned CPTAC3 407b0ef1-2759-43ef-b9cf-39520e5122d3 c353ac360b9fc7a795d2ceab46d79092 {"aliquot_tag": "ALQ_d09928b4", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00090.miRNA-Seq.T.hg38 C3L-00090 UCEC miRNA-Seq tumor CPT0001140164 021faa88-c804-417e-841e-63ff35e1db2b_mirnaseq_gdc_realn.bam 229454835 BAM harmonized CPTAC3 7b65a140-e65e-47ae-b105-e5490b5fec71 be003779e722a749254850b5d994f6da {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.chimeric.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.chimeric.gdc_realn.bam 85462736 BAM chimeric harmonized CPTAC3 ddbcd435-effe-43f2-a9fc-ec1029627905 84a6a7947a1bd0b2cdf77d1f9b2adbef {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.chimeric.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.chimeric.gdc_realn.bam 309612395 BAM chimeric harmonized CPTAC3 453a7729-afda-4e12-bac4-e1941e46b03e f629f9cbca77e7a0a3e88190d9ac4790 {"aliquot_tag": "ALQ_cc1b0868", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.genomic.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.genomic.gdc_realn.bam 8171374218 BAM genomic harmonized CPTAC3 20e50197-5136-4359-94f9-36a4bd5e3869 523d931f2706117af3460e52eaaeb0b9 {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.genomic.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.genomic.gdc_realn.bam 14384877946 BAM genomic harmonized CPTAC3 417e9641-a165-4b26-a93e-38092e8a078f d18b4d43145e1df60a27066c64e44100 {"aliquot_tag": "ALQ_cc1b0868", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.S10_L003_R1.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R1_001.fastq.gz 4036659089 FASTQ S10_L003_R1 unaligned CPTAC3 8ce5618d-9ff6-40f9-aeea-8d8e1633ae38 cc0e201ebbf5750cb68dff7f5cf1fb53 {"aliquot_tag": "ALQ_d09928b4", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.S10_L003_R2.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R2_001.fastq.gz 4410794510 FASTQ S10_L003_R2 unaligned CPTAC3 06d3fd4a-a623-4146-8500-4f1f17235253 bccc1a8ca98b1774c680967caea81e18 {"aliquot_tag": "ALQ_d09928b4", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.S28_R1.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R1_001.fastq.gz 8350920829 FASTQ S28_R1 unaligned CPTAC3 fd744fdd-b608-466d-89c0-ac69b4ee336e b6ce9a3d2c0857b115de5bf37eb2e031 {"aliquot_tag": "ALQ_cc1b0868", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.S28_R2.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R2_001.fastq.gz 8717993624 FASTQ S28_R2 unaligned CPTAC3 9509ef16-9764-4c6d-8927-3cf065b2ec9c de00adb86b1f10ec8f0426a2ed4683e6 {"aliquot_tag": "ALQ_cc1b0868", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.transcriptome.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.transcriptome.gdc_realn.bam 10890734409 BAM transcriptome harmonized CPTAC3 5749aacf-4c29-44af-9319-85592d90686e a5fa5bdd469706f7c02f9e4c686b729b {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor"} -C3L-00090.RNA-Seq.transcriptome.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.transcriptome.gdc_realn.bam 7560715137 BAM transcriptome harmonized CPTAC3 612946e1-cf35-436b-aad9-e11649bce532 f5a8b970ca342424afd9173cd76d3209 {"aliquot_tag": "ALQ_cc1b0868", "gdc_sample_type": "Primary Tumor"} -C3L-00090.WGS.N C3L-00090 UCEC WGS blood_normal CPT0000040163 CPT0000040163.WholeGenome.RP-1303.bam 150089355874 BAM aligned CPTAC3 ddb9ef12-d297-4868-a9d6-192874ce63d2 ba935e9828a5b9b5115e5903960284fb {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal"} -C3L-00090.WGS.N.hg38 C3L-00090 UCEC WGS blood_normal CPT0000040163 7959d3f4-80cb-45f5-99ea-248ac2059877_gdc_realn.bam 220754997092 BAM harmonized CPTAC3 833145ed-db94-4cb2-8429-df062a71bd8a de12ab4ba4f59524c4bb67c536a69bf3 {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal"} -C3L-00090.WGS.T C3L-00090 UCEC WGS tumor CPT0001140005 CPT0001140005.WholeGenome.RP-1303.bam 167494737156 BAM aligned CPTAC3 2fc76a58-9c13-4726-bbb9-3034c381ea5a 95982fb150b254215f49425f5103d173 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor"} -C3L-00090.WGS.T.hg38 C3L-00090 UCEC WGS tumor CPT0001140005 cfc5140e-1c15-4b9f-83e0-5613e427870e_gdc_realn.bam 240615180579 BAM harmonized CPTAC3 544edc00-ac31-47cf-9489-1a797eb22e53 e393ab18e572e3b8796d0ead36818bdf {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor"} -C3L-00090.WXS.N C3L-00090 UCEC WXS blood_normal CPT0000040163 CPT0000040163.WholeExome.RP-1303.bam 34454096383 BAM aligned CPTAC3 4d0d66b8-65d9-40d4-894b-6cf9bbead21b f3d3ae03dbfb3240bad6e67a087d4bee {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal"} -C3L-00090.WXS.N.hg38 C3L-00090 UCEC WXS blood_normal CPT0000040163 7959d3f4-80cb-45f5-99ea-248ac2059877_gdc_realn.bam 48271962279 BAM harmonized CPTAC3 d74368b7-1924-4c44-8079-1858f7ebf85a c5a24dbe94b8b02c98e2fa223c83ae6c {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal"} -C3L-00090.WXS.T C3L-00090 UCEC WXS tumor CPT0001140005 CPT0001140005.WholeExome.RP-1303.bam 36140880424 BAM aligned CPTAC3 f45d244b-6f8e-422e-b66a-ebab6c288193 8239581c966a0da2d5fe552ffbbcecef {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor"} -C3L-00090.WXS.T.hg38 C3L-00090 UCEC WXS tumor CPT0001140005 cfc5140e-1c15-4b9f-83e0-5613e427870e_gdc_realn.bam 49173156327 BAM harmonized CPTAC3 055e85d1-c36d-4fbd-b578-4fd23e81b9e5 873e12ce63b39ab28de201d144b81585 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor"} -C3L-00093.MethArray.Green.A C3L-00093 LUAD Methylation_Array tissue_normal CPT0086320009 203027390040_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 de0c5eb3-ac50-4f0c-9bf9-3ef04e375cf4 5fa6e7ce7fb1d900fccb524479da76bf {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.MethArray.Green.T C3L-00093 LUAD Methylation_Array tumor CPT0086310009 202234370120_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7b397ebc-a322-4631-88d8-fba0ce00a042 a0d6efa455c5b0ab66997f6eda4af0b9 {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor"} -C3L-00093.MethArray.Red.A C3L-00093 LUAD Methylation_Array tissue_normal CPT0086320009 203027390040_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 3eb642e9-317e-40f1-9df7-6441b79380bc 6a3f71c31535539a98b88fdad9d56111 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.MethArray.Red.T C3L-00093 LUAD Methylation_Array tumor CPT0086310009 202234370120_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 79b44df3-6b13-4a02-aeb3-158d75e5aff2 f76847e610e762c71a9606065428a8eb {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor"} -C3L-00093.miRNA-Seq.A.hg38 C3L-00093 LUAD miRNA-Seq tissue_normal CPT0086320006 b974679d-1bb9-414c-b747-1b004980a12d_mirnaseq_gdc_realn.bam 297127765 BAM harmonized CPTAC3 3eccd98d-a875-476c-8b40-9bdeecf4b875 485c303e2ea750f74c44520c9d877ca1 {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.miRNA-Seq.S10_L005_R1.A C3L-00093 LUAD miRNA-Seq tissue_normal CPT0086320006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L005_R1_001.unaln.bam 262021390 BAM S10_L005_R1 unaligned CPTAC3 057c2207-4dfb-4152-8501-ac65d72c5182 15a214eafde23c50e3461adf1d132b91 {"aliquot_tag": "ALQ_bdc5f5b9", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.miRNA-Seq.S37_L004_R1.T C3L-00093 LUAD miRNA-Seq tumor CPT0086310006 181113_UNC31-K00269_0164_AH23NNBBXY_AGTCAA_S37_L004_R1_001.unaln.bam 280713350 BAM S37_L004_R1 unaligned CPTAC3 53a76505-fd6a-42b8-a7b7-534476565626 ba88dab5970d9320ec3c33a19127e900 {"aliquot_tag": "ALQ_fa658f69", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00093.miRNA-Seq.T.hg38 C3L-00093 LUAD miRNA-Seq tumor CPT0086310006 58e9ac0f-f386-43d0-a308-36b488096ff6_mirnaseq_gdc_realn.bam 303562733 BAM harmonized CPTAC3 d3c02672-94bd-472d-ab48-702e94c9a630 839a53a6c1f4bfe50a244a47b7b56c4a {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor"} -C3L-00093.RNA-Seq.chimeric.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.chimeric.gdc_realn.bam 104409662 BAM chimeric harmonized CPTAC3 a35673bd-94d3-4467-9640-1a0a0d562fd4 132223df74185645990e9c12857f47bb {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.RNA-Seq.chimeric.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.chimeric.gdc_realn.bam 33631134 BAM chimeric harmonized CPTAC3 c09ea0e7-cd82-4c04-b808-e4832f242476 0b4c4a75f225405212dc8271c690b6c1 {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor"} -C3L-00093.RNA-Seq.genomic.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.genomic.gdc_realn.bam 7790988728 BAM genomic harmonized CPTAC3 294385e2-5b06-4b04-a267-fd5051a49897 6659faf984f3b9be562b30bffccf4134 {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.RNA-Seq.genomic.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.genomic.gdc_realn.bam 8143415019 BAM genomic harmonized CPTAC3 d4069ad7-276f-4425-8633-0d700fe39c0b 964a3ce5884d16433dcf11468bd89d9f {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor"} -C3L-00093.RNA-Seq.S5_L002_R1.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 3969360844 FASTQ S5_L002_R1 unaligned CPTAC3 50f03452-ea50-4a54-91e0-95acdff6f0cb 1f81174054de52607625c1be705e0609 {"aliquot_tag": "ALQ_fa658f69", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00093.RNA-Seq.S5_L002_R2.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4350518019 FASTQ S5_L002_R2 unaligned CPTAC3 79f2bde6-3fe1-4311-92bd-94ae03050ea3 1437799c416c416e07dac4eca2f79a9d {"aliquot_tag": "ALQ_fa658f69", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00093.RNA-Seq.S9_L003_R1.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R1_001.fastq.gz 4144511696 FASTQ S9_L003_R1 unaligned CPTAC3 99fb67eb-2ca7-414e-ae01-911a4f5e79b3 8b45d4a18da7b3fe80c6f7a48cee1d05 {"aliquot_tag": "ALQ_bdc5f5b9", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.RNA-Seq.S9_L003_R2.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R2_001.fastq.gz 4398493874 FASTQ S9_L003_R2 unaligned CPTAC3 408f76e2-86c8-4b9f-b7d5-dbfbbfc73f8a 1298163cae708da92ec173fa4a707398 {"aliquot_tag": "ALQ_bdc5f5b9", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.RNA-Seq.transcriptome.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.transcriptome.gdc_realn.bam 9604153244 BAM transcriptome harmonized CPTAC3 c705a219-ac4f-4e45-af11-fe67c53d9d96 b060dac5e8ef66195210ee037df82377 {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.RNA-Seq.transcriptome.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.transcriptome.gdc_realn.bam 11989541712 BAM transcriptome harmonized CPTAC3 c17d5f94-b91d-4fa5-b9f1-ce31f7e3c7a0 6acb08e75f37cdacca2338bbdc1b3204 {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor"} -C3L-00093.WGS.A C3L-00093 LUAD WGS tissue_normal CPT0086320009 CPT0086320009.WholeGenome.RP-1303.bam 58829759928 BAM aligned CPTAC3 17b6f5c7-3348-43ed-b08d-08ba79cbdd01 754daa9820384f109ef58a8713aa0686 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.WGS.A.hg38 C3L-00093 LUAD WGS tissue_normal CPT0086320009 957f5e10-59a8-4402-8c03-2fbfe508f403_wgs_gdc_realn.bam 85306167668 BAM harmonized CPTAC3 c8408009-b129-42b5-8fb3-239474950f2d 05c53ac15443b0261c38a9946910b259 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.WGS.N C3L-00093 LUAD WGS blood_normal CPT0087370002 CPT0087370002.WholeGenome.RP-1303.bam 55618405980 BAM aligned CPTAC3 2c933f4f-75a7-40c6-93d7-400c9e3703d2 5b5a20a21b59708c64e6fb1bd6cf71df {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal"} -C3L-00093.WGS.N.hg38 C3L-00093 LUAD WGS blood_normal CPT0087370002 75952a65-9864-45c6-9117-68c289bc412c_wgs_gdc_realn.bam 81332174860 BAM harmonized CPTAC3 325d2af5-9bd2-48e1-8802-25903c6b719f 64605a95beb2e9ec258f08de20982f85 {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal"} -C3L-00093.WGS.T C3L-00093 LUAD WGS tumor CPT0086310009 CPT0086310009.WholeGenome.RP-1303.bam 56985454789 BAM aligned CPTAC3 1c8395a6-6378-4559-817c-adb79e8a555b 8ee942e8841dddc2e728fedaa02f00bd {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor"} -C3L-00093.WGS.T.hg38 C3L-00093 LUAD WGS tumor CPT0086310009 c737a9df-b448-4aa0-a819-38fd00f06313_wgs_gdc_realn.bam 84805812639 BAM harmonized CPTAC3 d510c0c0-a514-40f1-8009-fdcdcc717668 5ae4ecb102c66716b88ece9c3a807521 {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor"} -C3L-00093.WXS.A C3L-00093 LUAD WXS tissue_normal CPT0086320009 CPT0086320009.WholeExome.RP-1303.bam 28134301830 BAM aligned CPTAC3 5096572a-3ba7-4644-b698-394b53d1b1ea 378f05d29a906cd759c9ffeb25eb70a2 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.WXS.A.hg38 C3L-00093 LUAD WXS tissue_normal CPT0086320009 957f5e10-59a8-4402-8c03-2fbfe508f403_wxs_gdc_realn.bam 38433553922 BAM harmonized CPTAC3 14db3d62-2a98-4396-829c-04db7ab6e4df 2b96a23424fedbaff17cc985c74dc83b {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00093.WXS.N C3L-00093 LUAD WXS blood_normal CPT0087370002 CPT0087370002.WholeExome.RP-1303.bam 25485391765 BAM aligned CPTAC3 6d38fe5c-0038-4bfe-876d-cc292458bd7b 5b54bf00f8e5bf1f3271c487269b81dc {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal"} -C3L-00093.WXS.N.hg38 C3L-00093 LUAD WXS blood_normal CPT0087370002 75952a65-9864-45c6-9117-68c289bc412c_wxs_gdc_realn.bam 34066825094 BAM harmonized CPTAC3 2f059402-756c-4b0a-a775-11bec5d96a98 d8ca907bd48c7fb358a8d0ab0f33c518 {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal"} -C3L-00093.WXS.T C3L-00093 LUAD WXS tumor CPT0086310009 CPT0086310009.WholeExome.RP-1303.bam 43410525008 BAM aligned CPTAC3 c241d193-c65d-439f-bdec-10620a5ccbb3 d776e39f0e82afda41d9a04bc4a4df2a {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor"} -C3L-00093.WXS.T.hg38 C3L-00093 LUAD WXS tumor CPT0086310009 c737a9df-b448-4aa0-a819-38fd00f06313_wxs_gdc_realn.bam 58914624238 BAM harmonized CPTAC3 4e567f18-72ac-4b7a-93c2-041cd80db908 668e3eccc751b27c51b16d8552156aaf {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor"} -C3L-00094.MethArray.Green.A C3L-00094 LUAD Methylation_Array tissue_normal CPT0000930009 203028200093_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 42d9f4fe-5d2a-48cd-a520-79f64fff74ad e8a20c0b36add242d7cbd0d465a2451f {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.MethArray.Green.T C3L-00094 LUAD Methylation_Array tumor CPT0000920005 201557560050_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5350b401-32ad-44a4-9b51-3b215577821f 06998fdb961f0bc0563fae7233bed49e {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor"} -C3L-00094.MethArray.Red.A C3L-00094 LUAD Methylation_Array tissue_normal CPT0000930009 203028200093_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 5996f844-911f-4c23-839b-d21595b3c487 1079b7e37f050e1f0d454f8255b6b4f6 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.MethArray.Red.T C3L-00094 LUAD Methylation_Array tumor CPT0000920005 201557560050_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 b2b859b7-08b6-46b1-90c1-c4ae26e90f84 c74d2db72372f62477cfbdfb33715bac {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor"} -C3L-00094.miRNA-Seq.A.hg38 C3L-00094 LUAD miRNA-Seq tissue_normal CPT0000930006 9376c39c-11f6-4a59-b2eb-cfdf2f826e3d_mirnaseq_gdc_realn.bam 297551732 BAM harmonized CPTAC3 c6d76531-9636-4f46-9432-dfbf6ef805fa 4ab10b84314ad39483c479d223ecafc9 {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.miRNA-Seq.S26_L008_R1.A C3L-00094 LUAD miRNA-Seq tissue_normal CPT0000930006 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L008_R1_001.unaln.bam 270889793 BAM S26_L008_R1 unaligned CPTAC3 96f4cd6f-ec44-4921-9543-4297d7204fdb 82034f8ea49ee942f2ca77487d1e5334 {"aliquot_tag": "ALQ_910bd1e0", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.miRNA-Seq.S33_L002_R1.T C3L-00094 LUAD miRNA-Seq tumor CPT0000920012 181012_UNC32-K00270_0124_AH223CBBXY_CTTGTA_S33_L002_R1_001.unaln.bam 224311936 BAM S33_L002_R1 unaligned CPTAC3 24cd08ff-a5f8-4eae-aac5-9013efa62dd9 a7d2bb345eb28633ae94644a88a59026 {"aliquot_tag": "ALQ_b21d0d08", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00094.miRNA-Seq.T.hg38 C3L-00094 LUAD miRNA-Seq tumor CPT0000920012 4cd8df3f-175e-4c8a-bf32-dfc9490fb54b_mirnaseq_gdc_realn.bam 242962264 BAM harmonized CPTAC3 85a21e7e-dbbf-4092-bf9d-f0b1655b6f82 c7023e2c0dc1a531a8cb8f0f2b984023 {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor"} -C3L-00094.RNA-Seq.chimeric.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.chimeric.gdc_realn.bam 95346629 BAM chimeric harmonized CPTAC3 f4ac9fb5-d25d-41f2-8bcb-d7681cc3e441 489bfabe483cb054e143f55ae40d13b5 {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.RNA-Seq.chimeric.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.chimeric.gdc_realn.bam 113806740 BAM chimeric harmonized CPTAC3 0a8a85df-a671-4bf0-b32c-250b11e8ff78 adc1cb586de0605a76ebdd106561c8d2 {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor"} -C3L-00094.RNA-Seq.genomic.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.genomic.gdc_realn.bam 8640444843 BAM genomic harmonized CPTAC3 e7a5ddcf-ae66-4efc-9a1a-b70d0c715ecd a3289060dfca393b7afba2172272098e {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.RNA-Seq.genomic.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.genomic.gdc_realn.bam 8829381866 BAM genomic harmonized CPTAC3 f7c8b80f-a532-4190-92e2-391b359d5410 ba279bf2237c957ccadff9fe6fe2b5eb {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor"} -C3L-00094.RNA-Seq.S3_L001_R1.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3882737829 FASTQ S3_L001_R1 unaligned CPTAC3 637c9c2b-25a7-484f-8c9e-b289ccb92ca0 1902d6751a2997b1fc862df5bb53bae6 {"aliquot_tag": "ALQ_b21d0d08", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00094.RNA-Seq.S3_L001_R2.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 4264164416 FASTQ S3_L001_R2 unaligned CPTAC3 44f555cb-1abe-4062-acd5-83afe55fc8e4 89048493887faf90018f5308c9b4b1bd {"aliquot_tag": "ALQ_b21d0d08", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00094.RNA-Seq.S9_L003_R1.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R1_001.fastq.gz 4219590338 FASTQ S9_L003_R1 unaligned CPTAC3 c38ccbc9-b426-4508-b494-0a9029f7ea4a 327e491bc904a0f99fe2b2c6d1e8ae56 {"aliquot_tag": "ALQ_910bd1e0", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.RNA-Seq.S9_L003_R2.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R2_001.fastq.gz 4537164488 FASTQ S9_L003_R2 unaligned CPTAC3 b36c367b-dfd3-4390-b75c-96004aed8468 750383a193dea4394818c435f1e1e4bb {"aliquot_tag": "ALQ_910bd1e0", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.RNA-Seq.transcriptome.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.transcriptome.gdc_realn.bam 10456265799 BAM transcriptome harmonized CPTAC3 c5612d70-5f71-4d2a-9cf1-ec4b114fbd24 9c9a72133dd7c6cd2cb6418edc020acb {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.RNA-Seq.transcriptome.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.transcriptome.gdc_realn.bam 9808994110 BAM transcriptome harmonized CPTAC3 933f0419-f937-4132-b93e-2db584fe916c 9d97aa07fe2ae8a94fac2275e0f443b0 {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor"} -C3L-00094.WGS.A C3L-00094 LUAD WGS tissue_normal CPT0000930009 CPT0000930009.WholeGenome.RP-1303.bam 59287011064 BAM aligned CPTAC3 79c0deec-ba69-47eb-8f0a-431da754ce18 6e13c7fb99e79d75604127e716ec4a45 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.WGS.A.hg38 C3L-00094 LUAD WGS tissue_normal CPT0000930009 691dec7d-c8ae-4f74-95e4-461cf442ac1d_wgs_gdc_realn.bam 86583779340 BAM harmonized CPTAC3 92182d9d-7eab-433b-bdd7-865004b01319 3f90e00c98265fc570214c439c5b82b4 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.WGS.N C3L-00094 LUAD WGS blood_normal CPT0003900002 CPT0003900002.WholeGenome.RP-1303.bam 143379345416 BAM aligned CPTAC3 7f8ed1af-c13e-44b5-9e83-e294703934d2 f6ffa74448fc94ca37b49ac788ba29c2 {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00094.WGS.N.hg38 C3L-00094 LUAD WGS blood_normal CPT0003900002 ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 209201510449 BAM harmonized CPTAC3 84077077-8bf8-4370-bea5-afd475908684 a16790ffb82c2b4ecbc1fb255fecc564 {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00094.WGS.T C3L-00094 LUAD WGS tumor CPT0000920005 CPT0000920005.WholeGenome.RP-1303.bam 139954482025 BAM aligned CPTAC3 e4999135-0d67-4a36-b098-48288e880042 59a48cace35f2b85f06cf841ae700fbf {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor"} -C3L-00094.WGS.T.hg38 C3L-00094 LUAD WGS tumor CPT0000920005 f4ce09d1-5d07-486d-9571-594f91df3a2c_gdc_realn.bam 203051531923 BAM harmonized CPTAC3 dd9acd24-b696-4367-a896-2424799b1cb8 3dd5bd75450df3ffff118770d3ccc72a {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor"} -C3L-00094.WXS.A C3L-00094 LUAD WXS tissue_normal CPT0000930009 CPT0000930009.WholeExome.RP-1303.bam 36987624475 BAM aligned CPTAC3 887fbde6-8268-40e5-805c-b9446f0dacf5 2f3fa2c6cc4d34e32ee69e613c35b980 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.WXS.A.hg38 C3L-00094 LUAD WXS tissue_normal CPT0000930009 691dec7d-c8ae-4f74-95e4-461cf442ac1d_wxs_gdc_realn.bam 49609560684 BAM harmonized CPTAC3 1d87f398-b674-4c45-a1ef-8dff8e21a6af 63b83c955a78eb8b1088e0f35b32d69f {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00094.WXS.N C3L-00094 LUAD WXS blood_normal CPT0003900002 CPT0003900002.WholeExome.RP-1303.bam 29033590086 BAM aligned CPTAC3 98b6fc0d-4a04-4f16-af00-eec20175107a cc2deb919b47668e5601f5923f49d60a {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00094.WXS.N.hg38 C3L-00094 LUAD WXS blood_normal CPT0003900002 ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 39049896925 BAM harmonized CPTAC3 328bd359-d972-4bbc-9fc7-541d883db07d 44d519fd30898915b33eab5686535926 {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00094.WXS.T C3L-00094 LUAD WXS tumor CPT0000920005 CPT0000920005.WholeExome.RP-1303.bam 33346843527 BAM aligned CPTAC3 7e42e5ac-ad12-4448-93f0-f20886330c14 db544ea830b6415d3ffeef608a12de2c {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor"} -C3L-00094.WXS.T.hg38 C3L-00094 LUAD WXS tumor CPT0000920005 f4ce09d1-5d07-486d-9571-594f91df3a2c_gdc_realn.bam 45847939308 BAM harmonized CPTAC3 3f162dd1-53ca-4295-ad07-cd7a796d8d3d 687180fb35d9cb9a1a9c21ea1c16d4a4 {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor"} -C3L-00095.DUP_85a21550.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM aligned CPTAC3 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00095.DUP_85a21550.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM harmonized CPTAC3 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00095.MethArray.Green.A C3L-00095 LUAD Methylation_Array tissue_normal CPT0001690009 203027390073_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4f198590-798f-4499-95c8-c45fccd0a879 ffce288a3d37a981972557f097e4bdfc {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.MethArray.Green.T C3L-00095 LUAD Methylation_Array tumor CPT0001660005 201557540007_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 d3890b3d-a816-4613-ad1f-0c270067e7bd f2ce7466c0e6dde209b3e11f3a4ed345 {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor"} -C3L-00095.MethArray.Red.A C3L-00095 LUAD Methylation_Array tissue_normal CPT0001690009 203027390073_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6a9689b1-9866-4771-93c7-05618d8714db 1439bc006cca0047ed73cdd2a74f94da {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.MethArray.Red.T C3L-00095 LUAD Methylation_Array tumor CPT0001660005 201557540007_R05C01_Red.idat 13676222 IDAT Red NA CPTAC3 3369e5ab-aec9-4a7e-967a-3aebe47d999e cf6af662b785bb61fecb2b6d9adab139 {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor"} -C3L-00095.miRNA-Seq.A.hg38 C3L-00095 LUAD miRNA-Seq tissue_normal CPT0001690006 e07d2ce3-0047-4b0c-aa7c-22c9c2381f48_mirnaseq_gdc_realn.bam 259141036 BAM harmonized CPTAC3 581903ca-528f-46de-9dce-406ff9d09197 a283b84436a1f3b37d2c8326819ed60f {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.miRNA-Seq.S24_L002_R1.T C3L-00095 LUAD miRNA-Seq tumor CPT0001660008 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L002_R1_001.unaln.bam 211540113 BAM S24_L002_R1 unaligned CPTAC3 4fd2de7a-e163-4c58-ae58-ec37809797d1 2cab0adc3355174d5036a4e5274f51c6 {"aliquot_tag": "ALQ_e972caf6", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00095.miRNA-Seq.S27_L008_R1.A C3L-00095 LUAD miRNA-Seq tissue_normal CPT0001690006 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L008_R1_001.unaln.bam 232574427 BAM S27_L008_R1 unaligned CPTAC3 273065be-bcaf-46f8-a791-e22359c7498b 29f09600c7bc6c707bfd2b085ebf7374 {"aliquot_tag": "ALQ_8c9a7020", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.miRNA-Seq.T.hg38 C3L-00095 LUAD miRNA-Seq tumor CPT0001660008 c289b80b-bb9e-4d22-8e82-0dc5dc24fcde_mirnaseq_gdc_realn.bam 233378893 BAM harmonized CPTAC3 585e4df7-d12e-4ef0-a77b-fc914e7649ff c15148c3d9cd0b079d5f205a5a2771a7 {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor"} -C3L-00095.RNA-Seq.chimeric.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.chimeric.gdc_realn.bam 128555111 BAM chimeric harmonized CPTAC3 fffc7dad-b234-49a4-a020-f39078dcc2dd 1e689b26b4b7f59921ed10227e244fd9 {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.RNA-Seq.chimeric.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.chimeric.gdc_realn.bam 66326939 BAM chimeric harmonized CPTAC3 ec7f6788-c89a-45c7-9a3e-f0030c858e12 b0279528666ceab317a31575f15f4418 {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor"} -C3L-00095.RNA-Seq.genomic.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.genomic.gdc_realn.bam 7604501464 BAM genomic harmonized CPTAC3 07a91b77-8385-4a47-9d5c-204284488e34 ca93b7aed10553067455bfd503c3dd17 {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.RNA-Seq.genomic.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.genomic.gdc_realn.bam 8022260193 BAM genomic harmonized CPTAC3 ff3e9462-796a-4405-872b-2ad51acfe0ee 329fe5cfc58340b8ec001404e6b1f7aa {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor"} -C3L-00095.RNA-Seq.S11_L003_R1.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R1_001.fastq.gz 3646684986 FASTQ S11_L003_R1 unaligned CPTAC3 e1a8bf73-5ae2-45b8-a9ed-4c5381346902 81f18182db340bbf52930a96dd8323ff {"aliquot_tag": "ALQ_8c9a7020", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.RNA-Seq.S11_L003_R2.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R2_001.fastq.gz 3966899842 FASTQ S11_L003_R2 unaligned CPTAC3 283a503b-f739-49f4-84e9-16216878381a 709c53cfed79cd6a41a3719ec89d5a14 {"aliquot_tag": "ALQ_8c9a7020", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.RNA-Seq.S7_L002_R1.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R1_001.fastq.gz 3710372720 FASTQ S7_L002_R1 unaligned CPTAC3 7e020a14-2e15-4e88-b8d8-14f8e6e01cbe 3bc13e64396280f25d3702836e00ae08 {"aliquot_tag": "ALQ_e972caf6", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00095.RNA-Seq.S7_L002_R2.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4100936080 FASTQ S7_L002_R2 unaligned CPTAC3 35cf770b-a392-4a21-b7cc-707a3aa5092c a8a45b7c2e426539eb1f580ab47c2d40 {"aliquot_tag": "ALQ_e972caf6", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00095.RNA-Seq.transcriptome.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.transcriptome.gdc_realn.bam 9355054145 BAM transcriptome harmonized CPTAC3 769ef4a5-9b5e-4c91-bb3f-3aaf4686a230 a9a42fad48babd17c58e8ca313b13597 {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.RNA-Seq.transcriptome.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.transcriptome.gdc_realn.bam 10141946868 BAM transcriptome harmonized CPTAC3 f785e31a-1cdd-43cd-84a6-76d857f32e3e 762d27554dc1b3537befdb5139b929b2 {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor"} -C3L-00095.WGS.A C3L-00095 LUAD WGS tissue_normal CPT0001690009 CPT0001690009.WholeGenome.RP-1303.bam 56181467899 BAM aligned CPTAC3 9285b91a-9cc5-4501-a1ab-dabcbc20f91c e0785f5f8ff4df9509532cc68b1eef50 {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.WGS.A.hg38 C3L-00095 LUAD WGS tissue_normal CPT0001690009 8fe04429-c7db-4162-aad6-a408b805aa6d_wgs_gdc_realn.bam 81778809932 BAM harmonized CPTAC3 192d9a31-4dec-4ee2-8a66-6311552ad1e4 a48fce3d08ea6b23d04f50a74f00f833 {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.WGS.N C3L-00095 LUAD WGS blood_normal CPT0003910002 CPT0003910002.WholeGenome.RP-1303.bam 135592895181 BAM aligned CPTAC3 60e0676f-351c-465e-92e5-8273421c646d f9a9ed8e6a5d31d3eec161eb26ba58a3 {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal"} -C3L-00095.WGS.N.hg38 C3L-00095 LUAD WGS blood_normal CPT0003910002 758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 197918081619 BAM harmonized CPTAC3 fd525ceb-bac6-4283-9c24-73776b2451f6 5e142d4345d7787e94e6c04d394a8d2e {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal"} -C3L-00095.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005 CPT0001660005.WholeGenome.RP-1303.bam 148288840542 BAM aligned CPTAC3 21e65603-ef7f-43af-bd5d-c51efdba6d4d fc02ed037f6c4364c291966d120b1bfa {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor"} -C3L-00095.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005 e0e4eca2-5f90-4ae4-924f-4e5548af49b1_gdc_realn.bam 214912595561 BAM harmonized CPTAC3 ad7da10d-97cd-44e0-95ee-a71b1b488fcd f29196fe8021c623e5f0d96a5ad101de {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor"} -C3L-00095.WXS.A C3L-00095 LUAD WXS tissue_normal CPT0001690009 CPT0001690009.WholeExome.RP-1303.bam 76609175796 BAM aligned CPTAC3 383c93e4-a9a9-47f2-88f2-76ef669754c3 cd220380b9468f8a0f43a9c419f714ac {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.WXS.A.hg38 C3L-00095 LUAD WXS tissue_normal CPT0001690009 8fe04429-c7db-4162-aad6-a408b805aa6d_wxs_gdc_realn.bam 103305046426 BAM harmonized CPTAC3 b5f75ffd-bdff-4255-bd17-74dd003f190e 71770d7b5395aaa056469dc45ef2ea53 {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00095.WXS.N C3L-00095 LUAD WXS blood_normal CPT0003910002 CPT0003910002.WholeExome.RP-1303.bam 39096668759 BAM aligned CPTAC3 7080d591-3af7-44eb-963d-e9df4df9c776 494a271302d1ccae9ac1c880599bb753 {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal"} -C3L-00095.WXS.N.hg38 C3L-00095 LUAD WXS blood_normal CPT0003910002 758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 52870668721 BAM harmonized CPTAC3 e2c6dc65-722d-41fb-91ef-b4b968e0a846 23790503d0795e93e9cc912baaed3bfc {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal"} -C3L-00095.WXS.T C3L-00095 LUAD WXS tumor CPT0001660005 CPT0001660005.WholeExome.RP-1303.bam 30808445114 BAM aligned CPTAC3 771c46ef-bfd6-4017-8c96-fbaf565449b8 fa9875d7a89e5d1633935da74d97b89d {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor"} -C3L-00095.WXS.T.hg38 C3L-00095 LUAD WXS tumor CPT0001660005 e0e4eca2-5f90-4ae4-924f-4e5548af49b1_gdc_realn.bam 42441934601 BAM harmonized CPTAC3 114678a6-bb63-4c25-b546-1b595c70b199 ebc4c7aefeae6b8a34dfab9a56f08e03 {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor"} -C3L-00096.MethArray.Green.A C3L-00096 CCRCC Methylation_Array tissue_normal CPT0001190015 204930640122_R07C01_Grn.idat 13677965 IDAT Green NA CPTAC3 3e496b95-dc70-4992-9c13-62b562ff111a 62d9a1b41514950a4f88a3201546f254 {"aliquot_tag": "ALQ_118d2063", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.MethArray.Green.T C3L-00096 CCRCC Methylation_Array tumor CPT0001180005 201557560005_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 5fbb6b3c-5e06-4e00-a767-8716b85fe6b1 7bffc6d3585f07dea5d41cbd26568c72 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor"} -C3L-00096.MethArray.Red.A C3L-00096 CCRCC Methylation_Array tissue_normal CPT0001190015 204930640122_R07C01_Red.idat 13677965 IDAT Red NA CPTAC3 cedb2323-b350-4ba5-8120-10d3990c4a1f 589212220371a2e96718b810615d76fc {"aliquot_tag": "ALQ_118d2063", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.MethArray.Red.T C3L-00096 CCRCC Methylation_Array tumor CPT0001180005 201557560005_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 29cd4b14-cbb2-4e87-81ca-81eb935f8dba 5551bd488b819b1937475d21c1d711f8 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor"} -C3L-00096.miRNA-Seq.A.hg38 C3L-00096 CCRCC miRNA-Seq tissue_normal CPT0001190006 d2c260e2-32db-4c2b-a969-815c2b459e2d_mirnaseq_gdc_realn.bam 249887770 BAM harmonized CPTAC3 4a591f2b-ad51-4402-8808-daf56e1a56c7 45c91d4e5d2736158b64786fc851ad06 {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.miRNA-Seq.S27_L004_R1.A C3L-00096 CCRCC miRNA-Seq tissue_normal CPT0001190006 181108_UNC31-K00269_0163_BH23TVBBXY_ATTCCT_S27_L004_R1_001.unaln.bam 223167810 BAM S27_L004_R1 unaligned CPTAC3 dff2971b-03eb-4ced-a617-2eaf580f2437 2ba6f54cdbcc5ffcaa4357496cb4af3d {"aliquot_tag": "ALQ_919f4098", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.miRNA-Seq.S28_L004_R1.T C3L-00096 CCRCC miRNA-Seq tumor CPT0001180164 181113_UNC31-K00269_0164_AH23NNBBXY_TGACCA_S28_L004_R1_001.unaln.bam 185550467 BAM S28_L004_R1 unaligned CPTAC3 76500f41-b647-4092-b0b4-0ca3c7fa9472 9408b4511adc2f367a7b757bbd415e44 {"aliquot_tag": "ALQ_1569c5b5", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00096.miRNA-Seq.T.hg38 C3L-00096 CCRCC miRNA-Seq tumor CPT0001180164 b5ef2feb-6549-432b-a628-8250b520d2cf_mirnaseq_gdc_realn.bam 199587198 BAM harmonized CPTAC3 da7ebade-e4ea-49b5-b272-f1bdd504040b f69e3e82df3f08914f0320251e40915c {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor"} -C3L-00096.RNA-Seq.chimeric.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.chimeric.gdc_realn.bam 67692167 BAM chimeric harmonized CPTAC3 d2ff2306-5912-4d22-ac7c-da4e05742f1e eff37ba26b4ad358684ad3fc2139b410 {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.RNA-Seq.chimeric.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.chimeric.gdc_realn.bam 82634280 BAM chimeric harmonized CPTAC3 dab8ad89-89ab-479b-b851-0ea8739aeda7 5c6ebfe8cbea1d1beb16d9d2f87a7f22 {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor"} -C3L-00096.RNA-Seq.genomic.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.genomic.gdc_realn.bam 8903811157 BAM genomic harmonized CPTAC3 7d1b3868-a378-484b-b9cc-91f34c3a4843 60d2ca5571de4c02e75f876b769dd054 {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.RNA-Seq.genomic.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.genomic.gdc_realn.bam 8094021973 BAM genomic harmonized CPTAC3 3492d4e2-3b65-4f60-ae21-2084541a75af 0445d4b7b59bf1f244448c8cca4a22bc {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor"} -C3L-00096.RNA-Seq.S12_L003_R1.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R1_001.fastq.gz 3934187560 FASTQ S12_L003_R1 unaligned CPTAC3 1fc59c06-7a5e-4273-b073-bddfa348fc5f 7b8be9dd298c3687df82dbc6e0e4cb1f {"aliquot_tag": "ALQ_1569c5b5", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00096.RNA-Seq.S12_L003_R2.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R2_001.fastq.gz 4273651772 FASTQ S12_L003_R2 unaligned CPTAC3 baac50d4-1206-4e90-939e-0d9f286b75b1 7e680fd356291a9055f66e3d57a36386 {"aliquot_tag": "ALQ_1569c5b5", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00096.RNA-Seq.S54_L007_R1.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R1_001.fastq.gz 4229200870 FASTQ S54_L007_R1 unaligned CPTAC3 05b22361-64fa-4d7c-b888-fbfb1a9497e7 1275cae63cc7a947dd153d33233da4fc {"aliquot_tag": "ALQ_919f4098", "sample": "S54", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.RNA-Seq.S54_L007_R2.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R2_001.fastq.gz 4608215924 FASTQ S54_L007_R2 unaligned CPTAC3 2710d6dc-f819-4609-a304-f11578f515bf 7007a39cafe51e02692a79d284a8a788 {"aliquot_tag": "ALQ_919f4098", "sample": "S54", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.RNA-Seq.transcriptome.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.transcriptome.gdc_realn.bam 11002737747 BAM transcriptome harmonized CPTAC3 556163f5-82c3-4578-8f1a-3301eccd7e8a 3c273bfae6ffa1c8b16bff47fc4a36ab {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.RNA-Seq.transcriptome.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.transcriptome.gdc_realn.bam 12439367049 BAM transcriptome harmonized CPTAC3 d9053e6c-fd29-4349-a188-153977637e0a 1b0c3412e03c1c6c8c6d425894a2ba7c {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor"} -C3L-00096.WGS.A C3L-00096 CCRCC WGS tissue_normal CPT0001190009 CPT0001190009.WholeGenome.RP-1303.bam 49655475100 BAM aligned CPTAC3 b8cc1af2-6169-4a55-9fab-c787da5eae88 ba7110894d1afccde38b0b18891b861e {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.WGS.A.hg38 C3L-00096 CCRCC WGS tissue_normal CPT0001190009 c36837e7-a86b-4c6e-a7c0-e2315113b895_wgs_gdc_realn.bam 73767913835 BAM harmonized CPTAC3 7a8ecb6f-2da6-4c97-9a19-461bfee6e613 41b98fcf0d55a3aecb75f4e9483cbbf8 {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.WGS.N C3L-00096 CCRCC WGS blood_normal CPT0000050163 CPT0000050163.WholeGenome.RP-1303.bam 141867274277 BAM aligned CPTAC3 b613ddb7-bcef-436c-994e-566efe855479 1f34e0f11c0a74ef97ba8ac49ca94093 {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00096.WGS.N.hg38 C3L-00096 CCRCC WGS blood_normal CPT0000050163 5baa4fd3-9295-4f75-aab3-d51914261e92_gdc_realn.bam 208979691335 BAM harmonized CPTAC3 adf140e7-5132-4424-8a14-b9228f6a6ba3 af9a2cd5ed34fe96764f93f475587e31 {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00096.WGS.T C3L-00096 CCRCC WGS tumor CPT0001180005 CPT0001180005.WholeGenome.RP-1303.bam 132696403988 BAM aligned CPTAC3 272a4d54-38b1-4256-bc82-43a79234f44d 03137730b9c9ff16e8f5b70692e226e2 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor"} -C3L-00096.WGS.T.hg38 C3L-00096 CCRCC WGS tumor CPT0001180005 18e6a6e7-b473-42cb-adb5-e8745643eca7_gdc_realn.bam 190587716178 BAM harmonized CPTAC3 3fca41a9-e1bc-45d1-a872-6492b6ed987f 7cdaccf64a32b5b1e8ae97a16eec282b {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor"} -C3L-00096.WXS.A C3L-00096 CCRCC WXS tissue_normal CPT0001190009 CPT0001190009.WholeExome.RP-1303.bam 31810715459 BAM aligned CPTAC3 742c58c3-1bb1-4e07-a907-a8833f489ddd 22c9896a6fc188eb9b7ad55cfaee7c88 {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.WXS.A.hg38 C3L-00096 CCRCC WXS tissue_normal CPT0001190009 c36837e7-a86b-4c6e-a7c0-e2315113b895_wxs_gdc_realn.bam 43238144672 BAM harmonized CPTAC3 b723ccbb-b596-41fb-b66a-c9162570c47b c5b207197f6ba061fc211c454fad597e {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00096.WXS.N C3L-00096 CCRCC WXS blood_normal CPT0000050163 CPT0000050163.WholeExome.RP-1303.bam 32504220524 BAM aligned CPTAC3 aed88bf8-1f5f-4a30-b8d8-165aed86cf6a 3a86ea1b1ba85d15bda377468df688bb {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00096.WXS.N.hg38 C3L-00096 CCRCC WXS blood_normal CPT0000050163 5baa4fd3-9295-4f75-aab3-d51914261e92_gdc_realn.bam 45054793814 BAM harmonized CPTAC3 50248eda-8eb5-4967-9473-d22c2836d494 a60b498965c5a5f30161e68031cf800a {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00096.WXS.T C3L-00096 CCRCC WXS tumor CPT0001180005 CPT0001180005.WholeExome.RP-1303.bam 30098206397 BAM aligned CPTAC3 be116ae4-b6a1-4110-8857-5c0bd861fa95 f34d9eb47f7420efe17d9c7f7696565f {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor"} -C3L-00096.WXS.T.hg38 C3L-00096 CCRCC WXS tumor CPT0001180005 18e6a6e7-b473-42cb-adb5-e8745643eca7_gdc_realn.bam 40124524024 BAM harmonized CPTAC3 a68482ba-c3df-48e7-80a9-b647285738e0 b576197f6fc3304a2c27e76ec1c39fb4 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor"} -C3L-00097.MethArray.Green.T C3L-00097 CCRCC Methylation_Array tumor CPT0000780005 201557540007_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a36fc07e-2777-49a7-aff5-2919972fa007 250a6a05ce4abbac63efc48cfd0e9dab {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor"} -C3L-00097.MethArray.Red.T C3L-00097 CCRCC Methylation_Array tumor CPT0000780005 201557540007_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 5612e893-1c4f-4802-946c-a2551dbddc62 85cf2067af6c45816f95c8f9cf753650 {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor"} -C3L-00097.miRNA-Seq.A.hg38 C3L-00097 CCRCC miRNA-Seq tissue_normal CPT0000790006 0ac4c094-7fc0-4adc-9e93-9e806fcbcfa7_mirnaseq_gdc_realn.bam 181489717 BAM harmonized CPTAC3 d52c12fc-54fb-408a-896f-cfc761a33c38 abd54f691ced6a2e514b3a9f244dba67 {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.miRNA-Seq.S28_L004_R1.A C3L-00097 CCRCC miRNA-Seq tissue_normal CPT0000790006 181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L004_R1_001.unaln.bam 165603445 BAM S28_L004_R1 unaligned CPTAC3 ac6d63d7-899e-49ad-aa9a-129e6f6746da 98953252ba25bfd4b158b1d9c44ad91b {"aliquot_tag": "ALQ_e1b1a831", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.miRNA-Seq.S29_L004_R1.T C3L-00097 CCRCC miRNA-Seq tumor CPT0000780008 181113_UNC31-K00269_0164_AH23NNBBXY_ACAGTG_S29_L004_R1_001.unaln.bam 221981603 BAM S29_L004_R1 unaligned CPTAC3 c1cb1b6c-6984-48be-9006-fc1efa5fed3c c90433116d8381b69e55cc8d7257cb74 {"aliquot_tag": "ALQ_3b69ac86", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00097.miRNA-Seq.T.hg38 C3L-00097 CCRCC miRNA-Seq tumor CPT0000780008 5c85a222-d95f-406a-b092-bd4e0ffa25e3_mirnaseq_gdc_realn.bam 250549538 BAM harmonized CPTAC3 8e519958-8088-4566-b02e-c1855018f77e 8b9d816db9aecdda7abac33d32bced0a {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor"} -C3L-00097.RNA-Seq.chimeric.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.chimeric.gdc_realn.bam 78263645 BAM chimeric harmonized CPTAC3 9db869a4-ff77-4733-9294-267c5238d9e1 037f08d1dec2586a480ef777724c85f7 {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.RNA-Seq.chimeric.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.chimeric.gdc_realn.bam 77406668 BAM chimeric harmonized CPTAC3 dc32b0e4-0697-4774-8a7c-930cb80bf29f 964ffddcfc7aa0cb79a330f73f0075ec {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor"} -C3L-00097.RNA-Seq.genomic.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.genomic.gdc_realn.bam 8581234203 BAM genomic harmonized CPTAC3 f96ae298-74b9-4833-9cc4-8edc1769e909 d946319ecea2e74bdc138b0882f4fec0 {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.RNA-Seq.genomic.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.genomic.gdc_realn.bam 7881393716 BAM genomic harmonized CPTAC3 b056f6dd-17eb-41a5-9bc0-e8767eea1f11 334c77202c1d43e402661dd9ebf44944 {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor"} -C3L-00097.RNA-Seq.S55_L007_R1.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R1_001.fastq.gz 4179767101 FASTQ S55_L007_R1 unaligned CPTAC3 60970db8-5749-434f-90fc-1719fd5f0e51 68baf44c9f1d096a18f9e6c2dc4a4317 {"aliquot_tag": "ALQ_e1b1a831", "sample": "S55", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.RNA-Seq.S55_L007_R2.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R2_001.fastq.gz 4400479017 FASTQ S55_L007_R2 unaligned CPTAC3 5adf9903-68ab-4d57-b95f-0dd015b64107 2b28d556bee0a0e3081572e2f06615f0 {"aliquot_tag": "ALQ_e1b1a831", "sample": "S55", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.RNA-Seq.S6_L002_R1.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R1_001.fastq.gz 4042629868 FASTQ S6_L002_R1 unaligned CPTAC3 571dd95a-2c63-4c72-83a5-69539b2aa695 6744def6ff0c4113d3a268ee7c9a7010 {"aliquot_tag": "ALQ_3b69ac86", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00097.RNA-Seq.S6_L002_R2.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R2_001.fastq.gz 4453379412 FASTQ S6_L002_R2 unaligned CPTAC3 89f65d1c-ba11-4ab8-8f06-16d32be9f046 06df2896bb1d9facb5934349fc428261 {"aliquot_tag": "ALQ_3b69ac86", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00097.RNA-Seq.transcriptome.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.transcriptome.gdc_realn.bam 10805118483 BAM transcriptome harmonized CPTAC3 fa1fd22f-f405-4ec4-9008-131eb4066ed4 b1c9d20b1300a94facdd36608738a34b {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.RNA-Seq.transcriptome.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.transcriptome.gdc_realn.bam 10624318545 BAM transcriptome harmonized CPTAC3 42392459-08b6-44a9-bce0-8e26d0bd795a 9e5d75aef87ddf7019e99e780e3248a6 {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor"} -C3L-00097.WGS.A C3L-00097 CCRCC WGS tissue_normal CPT0000790009 CPT0000790009.WholeGenome.RP-1303.bam 59809713640 BAM aligned CPTAC3 8faa0733-ddb1-4ad5-a73f-fa578084cdee c78cd4a787145429925235add821af84 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.WGS.A.hg38 C3L-00097 CCRCC WGS tissue_normal CPT0000790009 48b8f26b-8c03-4bd1-b2b2-faa3bb812572_wgs_gdc_realn.bam 87059397330 BAM harmonized CPTAC3 a44eb75b-ad4d-4936-b608-43e0b16e3f8d eead10b31f9a58ab2f3ac4a518d4fd58 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.WGS.N C3L-00097 CCRCC WGS blood_normal CPT0003920002 CPT0003920002.WholeGenome.RP-1303.bam 131756190552 BAM aligned CPTAC3 5433e300-93a8-449d-8ba9-160bcb196f6f 2edafc910baa5f083e4b79a400b7f5db {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00097.WGS.N.hg38 C3L-00097 CCRCC WGS blood_normal CPT0003920002 22e96e0d-3a4f-4d28-8b86-6fb61dc9a36c_gdc_realn.bam 192876806971 BAM harmonized CPTAC3 2d0e7b52-dd4a-47df-a683-83787a34a37b d0718ef4aec720ee80b28295b6331aa2 {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00097.WGS.T C3L-00097 CCRCC WGS tumor CPT0000780005 CPT0000780005.WholeGenome.RP-1303.bam 176299402581 BAM aligned CPTAC3 927f5e23-ccc8-4506-8cc3-0dc96ecbb835 15b46c62f969ab724e94fec17677d4f3 {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor"} -C3L-00097.WGS.T.hg38 C3L-00097 CCRCC WGS tumor CPT0000780005 26de720a-1e1d-42bc-ad0d-db5c3608e135_gdc_realn.bam 256770133938 BAM harmonized CPTAC3 b552663a-44c6-406d-b92e-89169c004bde 92909735ebeda85df360722eb941dfac {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor"} -C3L-00097.WXS.A C3L-00097 CCRCC WXS tissue_normal CPT0000790009 CPT0000790009.WholeExome.RP-1303.bam 41467314077 BAM aligned CPTAC3 e689915d-b72e-4020-8c41-b30b970aa566 589340beb1867cbf6a36aa8d346bb0c1 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.WXS.A.hg38 C3L-00097 CCRCC WXS tissue_normal CPT0000790009 48b8f26b-8c03-4bd1-b2b2-faa3bb812572_wxs_gdc_realn.bam 56319375807 BAM harmonized CPTAC3 6e57dae7-55b5-4149-95af-c8880402d7a5 88ec37e59c90cdcf136a0646b08e6b07 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00097.WXS.N C3L-00097 CCRCC WXS blood_normal CPT0003920002 CPT0003920002.WholeExome.RP-1303.bam 28493216928 BAM aligned CPTAC3 cccc16a4-62d7-42ea-bc72-9a3cdb09a7c7 621144431b5300b42f42f551eb2bd9b5 {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00097.WXS.N.hg38 C3L-00097 CCRCC WXS blood_normal CPT0003920002 22e96e0d-3a4f-4d28-8b86-6fb61dc9a36c_gdc_realn.bam 38133754641 BAM harmonized CPTAC3 2dc2e0f2-c333-4724-af7c-280bb6d2b49f 84e385d532c0687473e17e436d028ae5 {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00097.WXS.T C3L-00097 CCRCC WXS tumor CPT0000780005 CPT0000780005.WholeExome.RP-1303.bam 27453741366 BAM aligned CPTAC3 380eef21-597c-443c-9524-131eb34ff659 4240616deefb5fb9f302273920ab5cbe {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor"} -C3L-00097.WXS.T.hg38 C3L-00097 CCRCC WXS tumor CPT0000780005 26de720a-1e1d-42bc-ad0d-db5c3608e135_gdc_realn.bam 37851171228 BAM harmonized CPTAC3 9d384af7-2bd0-4cc2-bdb0-e982c3c9a7e6 539bd9c043c2a0c974ef2268cdf40d6e {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor"} -C3L-00098.MethArray.Green.T C3L-00098 UCEC Methylation_Array tumor CPT0000980005 201557560050_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d8f4e11f-3841-4ddc-a95e-908e667be3eb e51b8caf01da8f70b3d4e30e72c9c6e9 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor"} -C3L-00098.MethArray.Red.T C3L-00098 UCEC Methylation_Array tumor CPT0000980005 201557560050_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 f306d40f-3262-410e-9e42-c366c6c2aa44 20f27572aeb10a3c408b3d1e7c9a41f9 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor"} -C3L-00098.miRNA-Seq.S23_L002_R1.T C3L-00098 UCEC miRNA-Seq tumor CPT0000980008 181012_UNC32-K00270_0124_AH223CBBXY_CGATGT_S23_L002_R1_001.unaln.bam 226813996 BAM S23_L002_R1 unaligned CPTAC3 ee5705ae-5929-4a94-9097-150ae4aec4a0 08e4cb7ab60af5703efe7c41a4f462ba {"aliquot_tag": "ALQ_163cdf6", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00098.miRNA-Seq.T.hg38 C3L-00098 UCEC miRNA-Seq tumor CPT0000980008 4ed6514b-c3af-40ad-bc76-335362e9e910_mirnaseq_gdc_realn.bam 246051874 BAM harmonized CPTAC3 6bd195ba-3421-41e1-b9f2-19b8157cfbc6 4cccaa7d2cb85bd3766070be2f7fa430 {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.chimeric.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.chimeric.gdc_realn.bam 89471173 BAM chimeric harmonized CPTAC3 69d23c44-50f9-4595-addf-c8d4b41638a0 8f866ba20c0fd85b0f17a12e560a1ca4 {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.chimeric.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.chimeric.gdc_realn.bam 158981237 BAM chimeric harmonized CPTAC3 6b4bf932-37fa-42d9-ba11-7e8dc25337e2 7ea36228f151e758ee05983d1ae6446d {"aliquot_tag": "ALQ_e16e7311", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.genomic.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.genomic.gdc_realn.bam 6832199181 BAM genomic harmonized CPTAC3 58d19e37-dbb9-4b31-b59c-24171d22ead4 0b57b235c415ec7af02f1f1a83ad6d7a {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.genomic.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.genomic.gdc_realn.bam 7475631078 BAM genomic harmonized CPTAC3 792c3c1a-2cbc-4272-a41e-69084b5ee635 f5c874f198f8943044b8bfba76d65623 {"aliquot_tag": "ALQ_e16e7311", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.S49_R1.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R1_001.fastq.gz 5378348437 FASTQ S49_R1 unaligned CPTAC3 abf7cbc1-260e-44e6-a0c8-0aa0cc62e80d 29083cfa93b403547d4fed2f4b405e3e {"aliquot_tag": "ALQ_e16e7311", "sample": "S49", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.S49_R2.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R2_001.fastq.gz 5567821485 FASTQ S49_R2 unaligned CPTAC3 0d616095-baa8-4e12-a6ad-20182be762fb 8d40e10abc743b62aa0c96adbc25ca8a {"aliquot_tag": "ALQ_e16e7311", "sample": "S49", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.S8_L002_R1.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3242317433 FASTQ S8_L002_R1 unaligned CPTAC3 31252ba9-e052-4b77-809a-f936379ae00c d12bc29c9f283bfe877878c9fe7a4f8f {"aliquot_tag": "ALQ_163cdf6", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.S8_L002_R2.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 3679125276 FASTQ S8_L002_R2 unaligned CPTAC3 23be22ae-de50-4d74-a7c0-c890adbc662a 91261da7c4c761e5090993746de3e419 {"aliquot_tag": "ALQ_163cdf6", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.transcriptome.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.transcriptome.gdc_realn.bam 9909890732 BAM transcriptome harmonized CPTAC3 4100aed3-8776-45f6-bfcd-067a87ee2692 f86f6ff154da3d03505666b9f412e077 {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor"} -C3L-00098.RNA-Seq.transcriptome.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.transcriptome.gdc_realn.bam 4506420849 BAM transcriptome harmonized CPTAC3 81cca721-b45a-4f6a-b739-73e5f104e239 1c3e922cc87392c1b9558d59cc076db8 {"aliquot_tag": "ALQ_e16e7311", "gdc_sample_type": "Primary Tumor"} -C3L-00098.WGS.N C3L-00098 UCEC WGS blood_normal CPT0003930002 CPT0003930002.WholeGenome.RP-1303.bam 134189724250 BAM aligned CPTAC3 4e396754-9ddd-446e-ba62-da919ae9346d 0a096fe6186ad9a33c2271a430c889a5 {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00098.WGS.N.hg38 C3L-00098 UCEC WGS blood_normal CPT0003930002 0f46b9b0-6bff-4156-b505-669d72cc9428_gdc_realn.bam 196155902904 BAM harmonized CPTAC3 385cdfe0-fbae-486f-b333-4a88d1209afb e54a0eeb5225ccdacbc5fcf66680e271 {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00098.WGS.T C3L-00098 UCEC WGS tumor CPT0000980005 CPT0000980005.WholeGenome.RP-1303.bam 148178993129 BAM aligned CPTAC3 113891b2-abb7-49a4-b0ce-6638a3a6a803 5eee33956e07eefd69d2e8745fe78e69 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor"} -C3L-00098.WGS.T.hg38 C3L-00098 UCEC WGS tumor CPT0000980005 40c0a0d3-bdfd-4fa1-9aaa-9e8c747cc53c_gdc_realn.bam 214161107684 BAM harmonized CPTAC3 a64c4b72-0517-431f-8128-3a89ad7b387c 72e7f0a8e03daf6104ed69ca41d04dde {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor"} -C3L-00098.WXS.N C3L-00098 UCEC WXS blood_normal CPT0003930002 CPT0003930002.WholeExome.RP-1303.bam 28527718611 BAM aligned CPTAC3 cf61e0c2-8026-4223-a45e-c92d7b52b31c 0989616554b966610f0678e0bccdf3d7 {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00098.WXS.N.hg38 C3L-00098 UCEC WXS blood_normal CPT0003930002 0f46b9b0-6bff-4156-b505-669d72cc9428_gdc_realn.bam 38415338585 BAM harmonized CPTAC3 b58bdcce-b807-4958-814d-3576dee3ae0c 4ff284f153b5aa7d4ecdba9f403da57d {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00098.WXS.T C3L-00098 UCEC WXS tumor CPT0000980005 CPT0000980005.WholeExome.RP-1303.bam 34289383100 BAM aligned CPTAC3 9481cd37-140a-458d-980e-a06d3bc2f479 6bf4834b8534792a6371c9af6c5f9e71 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor"} -C3L-00098.WXS.T.hg38 C3L-00098 UCEC WXS tumor CPT0000980005 40c0a0d3-bdfd-4fa1-9aaa-9e8c747cc53c_gdc_realn.bam 46886822297 BAM harmonized CPTAC3 bdde9d09-6a54-46d9-985b-aaf95799f6f9 543c8fedcd3601de1e5cd560bc3889c8 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor"} -C3L-00102.MethArray.Green.A C3L-00102 PDA Methylation_Array tissue_normal CPT0001750009 203561450102_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9adac64b-e82d-47e2-b373-630ad82db322 02240e3d3688875e1be0d59d561b2eb6 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.MethArray.Green.T C3L-00102 PDA Methylation_Array tumor CPT0001730005 201557560005_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a9955ace-38e9-4702-8e26-33de7bcb77ba 22e78ee7ca200ff723f6cc5c11a8c844 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor"} -C3L-00102.MethArray.Red.A C3L-00102 PDA Methylation_Array tissue_normal CPT0001750009 203561450102_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 aa3a3b61-f310-48ed-870a-4552fac08fa0 704fac8db3ce689fcc16d92fad1f868f {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.MethArray.Red.T C3L-00102 PDA Methylation_Array tumor CPT0001730005 201557560005_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 8f326e68-5fb8-4be3-8ae3-960bdc96f716 6aa7b4df3c6a39ffa6166b733dac8b18 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor"} -C3L-00102.miRNA-Seq.A.hg38 C3L-00102 PDA miRNA-Seq tissue_normal CPT0001750006 c054f27d-d76c-433d-86bf-45d781be2046_mirnaseq_gdc_realn.bam 250907245 BAM harmonized CPTAC3 a2f01a29-55b8-4538-9137-7c639b5c252e 108894c52cb13f90d23393a62a6a048c {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.miRNA-Seq.S1_L001_R1.A C3L-00102 PDA miRNA-Seq tissue_normal CPT0001750006 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 228262816 BAM S1_L001_R1 unaligned CPTAC3 0a0eb34b-06f3-4149-bc33-19034de3a754 e1f2b5c832428e7c1fad505a7d4e34cc {"aliquot_tag": "ALQ_82364e84", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.miRNA-Seq.S25_L002_R1.T C3L-00102 PDA miRNA-Seq tumor CPT0001730008 181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L002_R1_001.unaln.bam 271601291 BAM S25_L002_R1 unaligned CPTAC3 0a559dbf-a8cc-4b1e-94c3-b340c09dd5f3 90d6021e051e189fbced085e6387c558 {"aliquot_tag": "ALQ_eace9623", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00102.miRNA-Seq.T.hg38 C3L-00102 PDA miRNA-Seq tumor CPT0001730008 bc3b9beb-00c2-4c0e-b2f4-1046e4e3b1dd_mirnaseq_gdc_realn.bam 301265231 BAM harmonized CPTAC3 e4d8f63b-7b60-4052-9eec-cc2ae227c9a5 b3ab3beaecd8eb83a840cde465bb9a92 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor"} -C3L-00102.RNA-Seq.chimeric.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.chimeric.gdc_realn.bam 104705092 BAM chimeric harmonized CPTAC3 91c303ba-b5ed-4f99-a38c-a3b8b46a410f 727963cc0b882fd84244f8e1f0f2b685 {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.RNA-Seq.chimeric.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.chimeric.gdc_realn.bam 83795294 BAM chimeric harmonized CPTAC3 b4b32485-98ff-4b4a-b0ba-c61cbcfc432a ad1ceeca816d15357f5be1cfbf93d145 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor"} -C3L-00102.RNA-Seq.genomic.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.genomic.gdc_realn.bam 8957352819 BAM genomic harmonized CPTAC3 40379d81-a9bf-4007-9473-e4f61e16ffd0 7ae55470bb0004176d1d2924dd989ed7 {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.RNA-Seq.genomic.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.genomic.gdc_realn.bam 7910671087 BAM genomic harmonized CPTAC3 76df7299-0d2b-469c-9f26-1cb15bd287ae 72a77a8fe8d5c99f2885954c2d7d04b1 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor"} -C3L-00102.RNA-Seq.S3_L001_R1.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3735627356 FASTQ S3_L001_R1 unaligned CPTAC3 5002990e-a20d-4114-93ea-c5c09f148fed 6ccfcbbda9048c6855fd04cf631e2b32 {"aliquot_tag": "ALQ_eace9623", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00102.RNA-Seq.S3_L001_R2.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4168581145 FASTQ S3_L001_R2 unaligned CPTAC3 2090faff-ade5-48df-a986-2d0902b1ee27 cd50fc4e06775135eaad276fa22335dc {"aliquot_tag": "ALQ_eace9623", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00102.RNA-Seq.S57_L007_R1.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R1_001.fastq.gz 4097212793 FASTQ S57_L007_R1 unaligned CPTAC3 893b0db2-7d98-4d74-af8c-93039af57455 73bdc2cd750d59951b8f3dc1d84a5e75 {"aliquot_tag": "ALQ_82364e84", "sample": "S57", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.RNA-Seq.S57_L007_R2.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R2_001.fastq.gz 4030560886 FASTQ S57_L007_R2 unaligned CPTAC3 f51f3a38-4291-448f-a064-3215b323e437 3422dbd2446fe4fedee4c76a772425e8 {"aliquot_tag": "ALQ_82364e84", "sample": "S57", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.RNA-Seq.transcriptome.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.transcriptome.gdc_realn.bam 10158982956 BAM transcriptome harmonized CPTAC3 84c7bb0f-c886-46bd-aff9-3bca2ba705ed df7265cce92a9d7ea821396ab4e7fd1f {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.RNA-Seq.transcriptome.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.transcriptome.gdc_realn.bam 10482851004 BAM transcriptome harmonized CPTAC3 96eaabfd-4722-4dc1-b09a-cbd966daed5d 260be76070cb9d55435d5f09a510e608 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor"} -C3L-00102.Targeted.T C3L-00102 PDA Targeted_Sequencing tumor CPT0001730005_1 CPT0001730005_1.CustomSelection.RP-1303.PDO-18786.bam 4268012966 BAM aligned CPTAC3 1c61d872-d871-49aa-9984-438fbe98f2cb 66c9ae2df5a9d136514351be27592a40 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor"} -C3L-00102.Targeted.T.hg38 C3L-00102 PDA Targeted_Sequencing tumor CPT0001730005_1 f69943e2-7588-45ab-99ac-48cba7813919_targetedsequencing_gdc_realn.bam 6121886369 BAM harmonized CPTAC3 c53e8ccb-6690-45e1-9faa-7be8dd8f9afa 39a3858f58f1c6d20b5e8f0b0a656fa3 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor"} -C3L-00102.WGS.A C3L-00102 PDA WGS tissue_normal CPT0001750009 CPT0001750009.WholeGenome.RP-1303.bam 66038463582 BAM aligned CPTAC3 c282e4cc-9b90-4e2f-bfe8-46f57d297d56 f7233dd29e6f119a89dd04a77ed4a8af {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.WGS.A.hg38 C3L-00102 PDA WGS tissue_normal CPT0001750009 80eecb4d-bf1d-43a1-886e-8956ecdc3ff2_wgs_gdc_realn.bam 96382478336 BAM harmonized CPTAC3 f1c22ede-fa58-45ef-8a11-b6a82cd3426a 1d9d56a08b823d109ee3a001c25ae442 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.WGS.N C3L-00102 PDA WGS blood_normal CPT0003940002 CPT0003940002.WholeGenome.RP-1303.bam 135032952332 BAM aligned CPTAC3 fa76ec3d-27f0-483d-bf6c-02b6a156295e 93e3d70abb9904e66e89381a4c8275c9 {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal"} -C3L-00102.WGS.N.hg38 C3L-00102 PDA WGS blood_normal CPT0003940002 b6b55db6-b2f3-4d98-b1d1-3958bf5ae28f_gdc_realn.bam 198828339729 BAM harmonized CPTAC3 0c563d66-bde5-445d-9a7a-909b4fdb2d8e 3f12a9b315874345f70168e504d59843 {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal"} -C3L-00102.WGS.T C3L-00102 PDA WGS tumor CPT0001730005 CPT0001730005.WholeGenome.RP-1303.bam 185554298141 BAM aligned CPTAC3 e7486158-9dfc-45bf-8fc8-56bb3ead2eb3 4e506f21bc474da09483686740e759b0 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor"} -C3L-00102.WGS.T.hg38 C3L-00102 PDA WGS tumor CPT0001730005 945dbda3-ac53-448a-abd8-96ebc5c55b48_gdc_realn.bam 265771172683 BAM harmonized CPTAC3 f122b006-ac29-4911-bbfa-05d08b8f35d8 208b29f56fe64662c92a44ae9912603d {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor"} -C3L-00102.WXS.A C3L-00102 PDA WXS tissue_normal CPT0001750009 CPT0001750009.WholeExome.RP-1303.bam 51288812851 BAM aligned CPTAC3 b8aaea0b-bfe3-4319-b65e-80f4f29ffa91 4c255d281bda32496097ded43e0d86d3 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.WXS.A.hg38 C3L-00102 PDA WXS tissue_normal CPT0001750009 80eecb4d-bf1d-43a1-886e-8956ecdc3ff2_wxs_gdc_realn.bam 69626016273 BAM harmonized CPTAC3 780aabc7-c22a-4239-b14b-9146f0a36549 12a045acea09b5ed3204c810e605b743 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00102.WXS.N C3L-00102 PDA WXS blood_normal CPT0003940002 CPT0003940002.WholeExome.RP-1303.bam 35236879549 BAM aligned CPTAC3 f469e20d-116c-4571-8deb-15033354d93e 2012bb93a2930089e5befde5bf2a2a46 {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal"} -C3L-00102.WXS.N.hg38 C3L-00102 PDA WXS blood_normal CPT0003940002 b6b55db6-b2f3-4d98-b1d1-3958bf5ae28f_gdc_realn.bam 46868278690 BAM harmonized CPTAC3 a4c9d5ea-87f2-4812-bf9e-2a21e0fbd265 28583b43975aca196921a96e9d43af6b {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal"} -C3L-00102.WXS.T C3L-00102 PDA WXS tumor CPT0001730005_1 CPT0001730005_1.WholeExome.RP-1303.bam 58721280023 BAM aligned CPTAC3 e6f8a14f-3831-4d9d-81d4-c3d9856022c9 c89714266e0f3aeefb53f158cc825c25 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor"} -C3L-00102.WXS.T C3L-00102 PDA WXS tumor CPT0001730005 CPT0001730005.WholeExome.RP-1303.bam 38336812583 BAM aligned CPTAC3 92c53583-901c-4210-ae65-bab5f04f0e7e da50e9c354f2faecfed237799d49f605 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor"} -C3L-00102.WXS.T.hg38 C3L-00102 PDA WXS tumor CPT0001730005_1 f69943e2-7588-45ab-99ac-48cba7813919_wxs_gdc_realn.bam 79964414419 BAM harmonized CPTAC3 d96f32f9-dd16-40de-b0bc-57996f25b99c 0603b8789840e093cf87decfe08ef6c2 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor"} -C3L-00102.WXS.T.hg38 C3L-00102 PDA WXS tumor CPT0001730005 945dbda3-ac53-448a-abd8-96ebc5c55b48_gdc_realn.bam 52210107073 BAM harmonized CPTAC3 e4e743cb-4e2d-4ef3-92e9-b6f538ded0c9 97b8b598ebabcdb4c813e6f6216798c1 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_605d6335.MethArray.Green.T C3L-00103 CCRCC Methylation_Array tumor CPT0000630006 204372030070_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c8b1652b-e7b5-48ae-bdd2-930be43ddaf9 3a95d2249f7abb2d7edc36fdd2a0c5b3 {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_605d6335.MethArray.Red.T C3L-00103 CCRCC Methylation_Array tumor CPT0000630006 204372030070_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 b3d1ac80-1afe-4638-a9a5-7565d3d2cf3b 1b398689a7e891ca17e98ce19160a3c2 {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_605d6335.WGS.T C3L-00103 CCRCC WGS tumor CPT0000630006 CPT0000630006.WholeGenome.RP-2158.bam 26175355835 BAM aligned CPTAC3 3155a7a2-6a20-4050-801c-2f63bb959f8b f36f440d866e41d8c2bd98bd76dd9ac6 {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_605d6335.WGS.T.hg38 C3L-00103 CCRCC WGS tumor CPT0000630006 3990afc0-9acf-48ba-aa21-633574e6e9ad_wgs_gdc_realn.bam 76347572564 BAM harmonized CPTAC3 151d2b72-87d1-47e1-b1dc-4a1d08b5eb11 62a85bf63b61b2de373cef528915ecde {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_605d6335.WXS.T C3L-00103 CCRCC WXS tumor CPT0000630006 CPT0000630006.WholeExome.RP-1303.bam 24686273415 BAM aligned CPTAC3 deadd118-a5ab-4f01-abbb-601a5892aec4 9c91ecdf23540ffc63b0ffe03bafd76f {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_605d6335.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000630006 3990afc0-9acf-48ba-aa21-633574e6e9ad_wxs_gdc_realn.bam 34533234282 BAM harmonized CPTAC3 17cf226b-45ff-41dc-b4c0-fc0604922886 cf5a41e3cbc8ac70884880b69aef909a {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_8a5bb92.miRNA-Seq.S34_L002_R1.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000650008 200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L002_R1_001.unaln.bam 261660434 BAM S34_L002_R1 unaligned CPTAC3 73d38500-a837-4cf8-80f8-8e61a7b49a51 ad297c8c923db7437f27b05bf2f25ec0 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_8a5bb92.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000650008 827db034-8884-434e-b7a2-02e3ada31709_mirnaseq_gdc_realn.bam 297445843 BAM harmonized CPTAC3 399cee47-430f-4e12-987a-756b8023b6bd 2702ef33f20b37932762147bdaa1511a {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_8a5bb92.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.chimeric.gdc_realn.bam 68654935 BAM chimeric harmonized CPTAC3 16f7ccee-2955-4f90-b7b2-1c388c84b8f3 b2125d752c86cc3801dc5fb861a066c7 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_8a5bb92.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.genomic.gdc_realn.bam 7897833348 BAM genomic harmonized CPTAC3 e17249a9-6cc6-4c11-8514-85095964fa6d 0d658952661819bee94dc205bc563ba9 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_8a5bb92.RNA-Seq.S19_L005_R1.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3714824575 FASTQ S19_L005_R1 unaligned CPTAC3 4c0823f5-5c3b-4dff-9ae1-40a8210c1fc3 90f1b27ac35446f74e735895beabe104 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_8a5bb92.RNA-Seq.S19_L005_R2.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4342999494 FASTQ S19_L005_R2 unaligned CPTAC3 fad68f1e-fa0e-4d25-a822-600c8a10afbb 61c15974438a5117c6d1c536bb60d3b8 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_8a5bb92.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.transcriptome.gdc_realn.bam 9700070197 BAM transcriptome harmonized CPTAC3 1895731f-76b8-4ff8-bf35-ad6b31e86054 a3314ebcdd616581488cc465da4570a3 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_ef1d9695.MethArray.Green.T C3L-00103 CCRCC Methylation_Array tumor CPT0000650006 204367490030_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1c3e5948-a555-47cc-821c-6ba3f483cda1 1726b54053742517a8a435761183e849 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_ef1d9695.MethArray.Red.T C3L-00103 CCRCC Methylation_Array tumor CPT0000650006 204367490030_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 236d7ab1-b6c7-466f-b39a-296ef1f3aa74 5785ed159188887f3851d3b2031e3cc2 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_ef1d9695.WGS.T C3L-00103 CCRCC WGS tumor CPT0000650006 CPT0000650006.WholeGenome.RP-2158.bam 32733454062 BAM aligned CPTAC3 0441718a-d113-4eb6-8882-8f054940c50a 05329f422ca1e63a932e185b419b1867 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_ef1d9695.WGS.T.hg38 C3L-00103 CCRCC WGS tumor CPT0000650006 6961ae42-bba0-4ef9-826d-13a2c00f863b_wgs_gdc_realn.bam 95061854424 BAM harmonized CPTAC3 280371ef-ef49-4f81-8651-6a98085bffbd 12cc0458f294026cda2661d38b7b1ab5 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_ef1d9695.WXS.T C3L-00103 CCRCC WXS tumor CPT0000650006 CPT0000650006.WholeExome.RP-1303.bam 28893546665 BAM aligned CPTAC3 eb8ef027-b6fa-40b8-a8fc-4a90b6fdc308 45170d8708140c7c2fc47b629544d186 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_ef1d9695.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000650006 6961ae42-bba0-4ef9-826d-13a2c00f863b_wxs_gdc_realn.bam 39013840060 BAM harmonized CPTAC3 4a89b7c5-1ee4-44d8-88b8-2d56d7e848f4 70ab102a7eba690cbe16c3c53a0dbd91 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_f0e27ea4.miRNA-Seq.S2_L006_R1.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000630009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATCACG_S2_L006_R1_001.unaln.bam 351081478 BAM S2_L006_R1 unaligned CPTAC3 267cdf14-4d04-4ebf-96a2-0e851d84846b 44659ea4f601d2e23cc090ff49e0f33a {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_f0e27ea4.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000630009 ef153bbc-c4a8-4364-930e-4d81d66878d2_mirnaseq_gdc_realn.bam 385914460 BAM harmonized CPTAC3 0a7a342a-b203-41a2-bf34-47edf859fe66 60305608aab6683698615d9917517070 {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_f0e27ea4.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.chimeric.gdc_realn.bam 175081205 BAM chimeric harmonized CPTAC3 2351b299-dd15-4471-bf13-60c794e52a40 6b3497cc29b2875f8db8f11aad84fbff {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_f0e27ea4.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.genomic.gdc_realn.bam 11771985515 BAM genomic harmonized CPTAC3 d7630516-45ab-4c5c-ab0f-50d6baf7e076 c0bc882bc7500de8f06c84fc0ee8fa9c {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_f0e27ea4.RNA-Seq.S29_L004_R1.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R1_001.fastq.gz 5570232704 FASTQ S29_L004_R1 unaligned CPTAC3 7dbef68a-aff2-402b-9665-24668fab5908 e8ebfe940dbeb0bb503f4e77fa52aabf {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_f0e27ea4.RNA-Seq.S29_L004_R2.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R2_001.fastq.gz 6449461194 FASTQ S29_L004_R2 unaligned CPTAC3 7f6794c3-542b-481f-9bfe-dd4781ec781c 2a7d5c3fbce2fb1963a8e8aeca20b1ea {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00103.DUP_f0e27ea4.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.transcriptome.gdc_realn.bam 14801677590 BAM transcriptome harmonized CPTAC3 551fb0b4-0289-4679-bd68-1337c7812345 016a906d5a57315d9dd5bec128198b8c {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00103.MethArray.Green.A C3L-00103 CCRCC Methylation_Array tissue_normal CPT0000660014 204930640120_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3ca87442-f422-4dde-9b07-344f30a6c71f 78816ccd18d772fa3f6e542cb90817a4 {"aliquot_tag": "ALQ_5fa8bc28", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.MethArray.Green.T C3L-00103 CCRCC Methylation_Array tumor CPT0000640008 202184990069_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e5910ae5-bb8f-46c6-a1e8-b8da04dcbbc6 5bc97fd5c55b0cae9549144093da10f3 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor"} -C3L-00103.MethArray.Red.A C3L-00103 CCRCC Methylation_Array tissue_normal CPT0000660014 204930640120_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 e9418052-7457-42ca-9ec1-e49836a661b1 f636cc4b7f91f372e69979ccd1697019 {"aliquot_tag": "ALQ_5fa8bc28", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.MethArray.Red.T C3L-00103 CCRCC Methylation_Array tumor CPT0000640008 202184990069_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 a7436b52-d702-4260-a6fc-a81ff78e3bf0 21245f965c48b097a942e65360685903 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor"} -C3L-00103.miRNA-Seq.A.hg38 C3L-00103 CCRCC miRNA-Seq tissue_normal CPT0000660006 975c97b1-d946-4d40-8e1b-627fa5b359e4_mirnaseq_gdc_realn.bam 259414329 BAM harmonized CPTAC3 2becc6b3-ad3b-4e52-b0c0-5281fc22275c f0820ecb779d58437b702611f4cdddf4 {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.miRNA-Seq.S21_L003_R1.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000640005 181113_UNC31-K00269_0164_AH23NNBBXY_TCATTC_S21_L003_R1_001.unaln.bam 181353878 BAM S21_L003_R1 unaligned CPTAC3 7326dbe9-1164-434b-a9f2-fc1a2a954d32 6f461eb7149390a4d29d005f8ee4e168 {"aliquot_tag": "ALQ_4b74ee9f", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00103.miRNA-Seq.S30_L004_R1.A C3L-00103 CCRCC miRNA-Seq tissue_normal CPT0000660006 181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L004_R1_001.unaln.bam 233112878 BAM S30_L004_R1 unaligned CPTAC3 61ea1844-e06e-4fb4-87ce-8d14e25427d3 3667e6e5270f59888ffe11b885cf6228 {"aliquot_tag": "ALQ_a8bdec45", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000640005 ac4fb97a-7871-49d7-a46c-28033dff66af_mirnaseq_gdc_realn.bam 207346466 BAM harmonized CPTAC3 93fe19d1-56af-4f1b-8a4a-af3201a20654 71b06296a692b4e8885f316645cfe559 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor"} -C3L-00103.RNA-Seq.chimeric.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.chimeric.gdc_realn.bam 76593002 BAM chimeric harmonized CPTAC3 8714f2bb-8baf-49d0-8a69-302ccd0ec3fb 2dc750fed6e00387c39b6dacd961dbbe {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.chimeric.gdc_realn.bam 98645682 BAM chimeric harmonized CPTAC3 d4f2978b-042b-45bc-a95a-8f6c693461cb c72e5584de5295d70ff3a9de144196e6 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor"} -C3L-00103.RNA-Seq.genomic.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.genomic.gdc_realn.bam 7554731421 BAM genomic harmonized CPTAC3 bed49e6e-f261-496a-9048-1344983fa8d0 5cd48106a89b724b56a9d21329671c5f {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.genomic.gdc_realn.bam 9216583164 BAM genomic harmonized CPTAC3 14cf0a4f-2608-4401-9a59-5a8a6b4c3337 f391d7a608f10b4349c465ff36f720a5 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor"} -C3L-00103.RNA-Seq.S56_L007_R1.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R1_001.fastq.gz 3754354855 FASTQ S56_L007_R1 unaligned CPTAC3 7583c79b-d6d8-4669-b558-0aba2ba67054 bf840fc5bdff84842dce0e0b4fcb06cc {"aliquot_tag": "ALQ_a8bdec45", "sample": "S56", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.RNA-Seq.S56_L007_R2.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R2_001.fastq.gz 4014415458 FASTQ S56_L007_R2 unaligned CPTAC3 de108ae0-884f-4c53-a4ab-40681988ef5c 709f0274b47d76dce3281d7bd07dadb3 {"aliquot_tag": "ALQ_a8bdec45", "sample": "S56", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.RNA-Seq.S7_L002_R1.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 4211540733 FASTQ S7_L002_R1 unaligned CPTAC3 0432802d-9155-45bd-90b8-8472a758eaa1 bd8f9e5aaa9f273eb3809656319ab627 {"aliquot_tag": "ALQ_4b74ee9f", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00103.RNA-Seq.S7_L002_R2.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 4462888273 FASTQ S7_L002_R2 unaligned CPTAC3 a37d45d8-1c52-4fd2-906f-d70282c859ec 7a58098bfcbf3697639cd568dd0d3b8e {"aliquot_tag": "ALQ_4b74ee9f", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00103.RNA-Seq.transcriptome.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.transcriptome.gdc_realn.bam 8856601514 BAM transcriptome harmonized CPTAC3 694339b8-6cf4-4955-adf0-ef4f125c4400 8680231f395525b04f707122b7c4e16e {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.transcriptome.gdc_realn.bam 10480913434 BAM transcriptome harmonized CPTAC3 63ce5123-4400-4aa1-a277-a5d6ce5cc6dd 7afea0aa2fd511333c1c7f04bcf3c6d0 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor"} -C3L-00103.WGS.A C3L-00103 CCRCC WGS tissue_normal CPT0000660009 CPT0000660009.WholeGenome.RP-1303.bam 54363989068 BAM aligned CPTAC3 b9e66dbc-c399-4024-acdf-8491a493dfe9 309ac08e7b1b007766d90b45ed14046a {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.WGS.A.hg38 C3L-00103 CCRCC WGS tissue_normal CPT0000660009 5e34b40b-83f7-4eb1-b42e-ffde801a6a4c_wgs_gdc_realn.bam 79788034613 BAM harmonized CPTAC3 2bb97d5f-bcf6-4ecb-89ab-3f2f9a7f0e64 6d0d680149f94817d5d4c98adf73cabd {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.WGS.N C3L-00103 CCRCC WGS blood_normal CPT0003850002 CPT0003850002.WholeGenome.RP-1303.bam 79382126911 BAM aligned CPTAC3 290f5cee-c397-4dbc-bfdc-b9a0aaedea27 56f18e3eebae4b6f82dbeb7705552cba {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal"} -C3L-00103.WGS.N.hg38 C3L-00103 CCRCC WGS blood_normal CPT0003850002 b35e7696-f8f2-4fdb-a2e7-e6b4842a4674_gdc_realn.bam 117135673578 BAM harmonized CPTAC3 62957d62-cf92-4457-84e0-a0c74dffd73f 28e06b003272f3f30da4ee6c4b77ca90 {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal"} -C3L-00103.WGS.T C3L-00103 CCRCC WGS tumor CPT0000640008 CPT0000640008.WholeGenome.RP-1303.bam 68572746909 BAM aligned CPTAC3 5a5e9f3e-2631-4ff2-8009-48d549d98114 c13f21092db0150c9542c4cccc37233a {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor"} -C3L-00103.WGS.T.hg38 C3L-00103 CCRCC WGS tumor CPT0000640008 c5a3c455-b1f3-4125-a6f5-401385ab2720_gdc_realn.bam 101056769537 BAM harmonized CPTAC3 1bc9301e-0f79-401d-9a81-e96a5675005e 4cdabbeecd850714fcfe287fb21c372e {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor"} -C3L-00103.WXS.A C3L-00103 CCRCC WXS tissue_normal CPT0000660009 CPT0000660009.WholeExome.RP-1303.bam 38364823448 BAM aligned CPTAC3 f5d342bd-ba86-47a5-9f9c-0c9fe650d3cf 5d908d47ce9e26716bef237e85cd4866 {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.WXS.A.hg38 C3L-00103 CCRCC WXS tissue_normal CPT0000660009 5e34b40b-83f7-4eb1-b42e-ffde801a6a4c_wxs_gdc_realn.bam 52639862514 BAM harmonized CPTAC3 1bcb4996-7610-4417-b648-bd9c7a34427e 23bf88201fad4be34640708442b749f9 {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00103.WXS.N C3L-00103 CCRCC WXS blood_normal CPT0003850002 CPT0003850002.WholeExome.RP-1303.bam 22186536977 BAM aligned CPTAC3 a5553301-99b3-478a-906f-2ae2158f9522 68a5a6707680b74140822cc1abb0eb70 {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal"} -C3L-00103.WXS.N.hg38 C3L-00103 CCRCC WXS blood_normal CPT0003850002 b35e7696-f8f2-4fdb-a2e7-e6b4842a4674_gdc_realn.bam 30381554017 BAM harmonized CPTAC3 be832dc4-0367-4d5a-aa34-b0dfafecaa92 66d2fa61d62c4898aea096bbde65ff95 {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal"} -C3L-00103.WXS.T C3L-00103 CCRCC WXS tumor CPT0000640008 CPT0000640008.WholeExome.RP-1303.bam 24599619481 BAM aligned CPTAC3 327cded6-b729-4655-b620-b0dbb32912e7 9a557c35c9b7d0b0a0eb44d8e9846743 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor"} -C3L-00103.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000640008 c5a3c455-b1f3-4125-a6f5-401385ab2720_gdc_realn.bam 33390644310 BAM harmonized CPTAC3 01c91555-2c8b-462a-9814-236ea632e22f a7c494fad70fb0ca406291eaca330976 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor"} -C3L-00104.MethArray.Green.T C3L-00104 GBM Methylation_Array tumor CPT0092440009 202234360029_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c09365e6-ee32-4785-8d0c-fd22eab3a45e 7084c250e23b3bd1162385e57f8376c5 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor"} -C3L-00104.MethArray.Red.T C3L-00104 GBM Methylation_Array tumor CPT0092440009 202234360029_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 7a4dc34c-3dd7-4542-bd37-fe0afcb41075 85142311a89ca96785e492e9fe5cf668 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor"} -C3L-00104.miRNA-Seq.S10_L007_R1.T C3L-00104 GBM miRNA-Seq tumor CPT0092440006 180724_UNC32-K00270_0106_BHWK3MBBXX_CATGGC_S10_L007_R1_001.unaln.bam 267308905 BAM S10_L007_R1 unaligned CPTAC3 7efe0301-9ab5-4db5-9d92-6f0f4a564277 a632b5e01e4d74e47153e950a63085e1 {"aliquot_tag": "ALQ_1765142c", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00104.miRNA-Seq.T.hg38 C3L-00104 GBM miRNA-Seq tumor CPT0092440006 9d826494-858e-442a-ab02-cada2c0339fe_mirnaseq_gdc_realn.bam 306396698 BAM harmonized CPTAC3 b9664e75-7a85-4fa3-8a26-58a6468b3f78 e0c824397189b1894afc0b15d47ec89f {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor"} -C3L-00104.RNA-Seq.chimeric.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.chimeric.gdc_realn.bam 59604666 BAM chimeric harmonized CPTAC3 75b03c0d-de34-4c81-a33c-cef6b5401a93 678a6ae5078629d093ee238a8d1d4b47 {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor"} -C3L-00104.RNA-Seq.genomic.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.genomic.gdc_realn.bam 10833956033 BAM genomic harmonized CPTAC3 964b3452-2c6d-4b43-b091-8692fcfc39b5 23dd61a3b6546156e19a2097a2060eb2 {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor"} -C3L-00104.RNA-Seq.S18_L005_R1.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4795357750 FASTQ S18_L005_R1 unaligned CPTAC3 a140b753-b805-40f4-90c0-25f726357d04 d1b67d538688145dc8dc7067843e6044 {"aliquot_tag": "ALQ_1765142c", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00104.RNA-Seq.S18_L005_R2.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 5281943263 FASTQ S18_L005_R2 unaligned CPTAC3 ebd6b26a-bbec-485a-9700-9a26cd0c2402 6342a9ca11a2c8a3a20381683539e56c {"aliquot_tag": "ALQ_1765142c", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00104.RNA-Seq.transcriptome.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.transcriptome.gdc_realn.bam 11125515114 BAM transcriptome harmonized CPTAC3 0ce6ab22-36f3-4622-a67c-83722a1cc526 8cc801d8986a4ef43487205d7afa371b {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor"} -C3L-00104.WGS.N C3L-00104 GBM WGS blood_normal CPT0093800002 CPT0093800002.WholeGenome.RP-1303.bam 66334077045 BAM aligned CPTAC3 73826e51-96a5-4216-aaf6-ae08fb5c3b49 e64d09a7a550f06482cbdaae9e80cd55 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00104.WGS.N.hg38 C3L-00104 GBM WGS blood_normal CPT0093800002 27b12d40-946d-4fc4-b336-b0edd9bcaa3c_wgs_gdc_realn.bam 96242353366 BAM harmonized CPTAC3 b671161a-35d8-41ec-af05-22e5d61df42a fc7cce96191e17bfba8c2104f1a931b8 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00104.WGS.T C3L-00104 GBM WGS tumor CPT0092440009 CPT0092440009.WholeGenome.RP-1303.bam 60975481512 BAM aligned CPTAC3 1a14cdb3-fc86-4cdf-9a9f-0f38768cb4ef 8b8e379fcd3ea5321c43fac56c568ca2 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor"} -C3L-00104.WGS.T.hg38 C3L-00104 GBM WGS tumor CPT0092440009 d36cf415-f716-4e50-a949-a06459cd5277_wgs_gdc_realn.bam 86365683446 BAM harmonized CPTAC3 d1be16bb-3b12-40f2-ac23-99fabddc615a e1de7a759d3f098737b206f69a6cfdca {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor"} -C3L-00104.WXS.N C3L-00104 GBM WXS blood_normal CPT0093800002 CPT0093800002.WholeExome.RP-1303.bam 31862370299 BAM aligned CPTAC3 ad5fe8fb-d478-4522-820f-4062170a3ce2 c7e5345ae2623f1b948dedf39cd15077 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00104.WXS.N.hg38 C3L-00104 GBM WXS blood_normal CPT0093800002 27b12d40-946d-4fc4-b336-b0edd9bcaa3c_wxs_gdc_realn.bam 42838462277 BAM harmonized CPTAC3 cd8ff448-91ea-44b2-9293-0c89f3b6c7a3 ff5559e623604cb69ebc1fcdab1c19f6 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00104.WXS.T C3L-00104 GBM WXS tumor CPT0092440009 CPT0092440009.WholeExome.RP-1303.bam 41370405160 BAM aligned CPTAC3 ae33607f-44c1-44b3-8e2a-fab785a71555 6fd25335a6a25156c3bef1dab0ac6266 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor"} -C3L-00104.WXS.T.hg38 C3L-00104 GBM WXS tumor CPT0092440009 d36cf415-f716-4e50-a949-a06459cd5277_wxs_gdc_realn.bam 56263243160 BAM harmonized CPTAC3 fc6acfc5-97f2-405f-9fb7-7f1b6c1dce00 c1e862119e35fa33149230c7cd84e4ad {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor"} -C3L-00136.MethArray.Green.T C3L-00136 UCEC Methylation_Array tumor CPT0000730008 202176290095_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bbe84fe1-79c6-45e6-b51e-b20f9f58d174 faaaed586d6ae48ef039d1411ef0186c {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor"} -C3L-00136.MethArray.Red.T C3L-00136 UCEC Methylation_Array tumor CPT0000730008 202176290095_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 55d23eb1-6473-448b-b804-19afccf1d0cd 246da85d7552f6cb8e9f69d8e63f2cbf {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor"} -C3L-00136.miRNA-Seq.S34_L002_R1.T C3L-00136 UCEC miRNA-Seq tumor CPT0000730005 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L002_R1_001.unaln.bam 244139774 BAM S34_L002_R1 unaligned CPTAC3 da03388e-40db-4ed3-bb7e-50c3b2306c16 978ab4784a5681d60629d8f057f66f85 {"aliquot_tag": "ALQ_3208e12a", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00136.miRNA-Seq.T.hg38 C3L-00136 UCEC miRNA-Seq tumor CPT0000730005 4369c1ee-e3bb-4298-9fe1-827c0fba9686_mirnaseq_gdc_realn.bam 268710737 BAM harmonized CPTAC3 504ca518-486f-41f1-b5de-cbae8b527af9 90e2927043f89d4d2d90faeb3444346d {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.chimeric.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.chimeric.gdc_realn.bam 175666620 BAM chimeric harmonized CPTAC3 a98b98a7-bc10-4e73-9865-4124fb75cbd2 8a6c6f0ab116748c822bf664832a0048 {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.chimeric.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.chimeric.gdc_realn.bam 269598174 BAM chimeric harmonized CPTAC3 78842188-850d-4e2d-93b3-0dd82060768b 6a6aca5dd8b153970dcdb995a173da2a {"aliquot_tag": "ALQ_298efc61", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.genomic.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.genomic.gdc_realn.bam 9272924749 BAM genomic harmonized CPTAC3 53fc9e31-2468-418b-8c98-fdb7666e6054 2adea2f36c6dc07086db2a0257060e2d {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.genomic.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.genomic.gdc_realn.bam 11235437711 BAM genomic harmonized CPTAC3 30306281-27ff-49fc-8bf7-7e3b3cf6b838 68ead6d0cc1b9bd23eff4cb807b454f5 {"aliquot_tag": "ALQ_298efc61", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.S10_L003_R1.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R1_001.fastq.gz 4224214315 FASTQ S10_L003_R1 unaligned CPTAC3 df0e2942-c702-4135-81a0-fbec4439d753 10ec1edb237bcdf561196c4ad4af50eb {"aliquot_tag": "ALQ_3208e12a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.S10_L003_R2.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R2_001.fastq.gz 4672327244 FASTQ S10_L003_R2 unaligned CPTAC3 4e1ad404-4646-4828-91b9-e3c35a4ce505 be0593f8b1d1d93f0bf703554a40a6af {"aliquot_tag": "ALQ_3208e12a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.S44_R1.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R1_001.fastq.gz 6629829146 FASTQ S44_R1 unaligned CPTAC3 1553b506-f502-4b5b-a7c9-e40af087a0b2 49a91f2118739b0e4e432a6ae53b318b {"aliquot_tag": "ALQ_298efc61", "sample": "S44", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.S44_R2.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R2_001.fastq.gz 6881683965 FASTQ S44_R2 unaligned CPTAC3 6565b68d-d783-4345-8e65-399ddce5cd26 8bfa5fe786c8871f07846699459692d4 {"aliquot_tag": "ALQ_298efc61", "sample": "S44", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.transcriptome.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.transcriptome.gdc_realn.bam 9940078016 BAM transcriptome harmonized CPTAC3 685522d2-ca12-44de-8ead-63ad2bff0b24 b89a9f0885347cd89891d129447ceacc {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor"} -C3L-00136.RNA-Seq.transcriptome.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.transcriptome.gdc_realn.bam 7793206924 BAM transcriptome harmonized CPTAC3 09f381fa-96f3-41bd-9793-9106df966350 0925fde68037946778a2abc6a9234d52 {"aliquot_tag": "ALQ_298efc61", "gdc_sample_type": "Primary Tumor"} -C3L-00136.WGS.N C3L-00136 UCEC WGS blood_normal CPT0003860002 CPT0003860002.WholeGenome.RP-1303.bam 62399756235 BAM aligned CPTAC3 5a4abbc1-e0fb-441b-9d0a-1d52ba000b9a 6cd815872e7347b4c49ad5d52dbfbe59 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00136.WGS.N.hg38 C3L-00136 UCEC WGS blood_normal CPT0003860002 2a17380f-bcb1-4de3-8934-af1d4b914892_gdc_realn.bam 90461500957 BAM harmonized CPTAC3 df7dc177-6120-49ae-9046-fffbeed04583 0dcfadb09e3d2a15cb225497de5bba76 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00136.WGS.T C3L-00136 UCEC WGS tumor CPT0000730008 CPT0000730008.WholeGenome.RP-1303.bam 68745944247 BAM aligned CPTAC3 04d5974a-d29b-44f0-a707-11fa0c67e3b0 698ae074161617677e28efbffb8e2b95 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor"} -C3L-00136.WGS.T.hg38 C3L-00136 UCEC WGS tumor CPT0000730008 0da07c96-e95e-45df-b12f-8c745696f271_gdc_realn.bam 99707787740 BAM harmonized CPTAC3 9cb2d2f8-a700-4dbf-bc69-cb34274209b9 77328573a907cabc609ae1d4f8d81607 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor"} -C3L-00136.WXS.N C3L-00136 UCEC WXS blood_normal CPT0003860002 CPT0003860002.WholeExome.RP-1303.bam 25291505137 BAM aligned CPTAC3 d837ac33-bb34-43ee-9b1e-4474ed7a2e11 38363f6e3b0acc599f8699cac40084b3 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00136.WXS.N.hg38 C3L-00136 UCEC WXS blood_normal CPT0003860002 2a17380f-bcb1-4de3-8934-af1d4b914892_gdc_realn.bam 34634548427 BAM harmonized CPTAC3 27465b6e-6b30-429d-9e0b-cac09c0a8f91 8fdac56d42b1b3a5f0c38c48d9f7cbc2 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00136.WXS.T C3L-00136 UCEC WXS tumor CPT0000730008 CPT0000730008.WholeExome.RP-1303.bam 23972211476 BAM aligned CPTAC3 6f7512c3-23ab-42ae-855c-c27bc12b1304 b1d93dbcedc194f58e9c0c9121c5c438 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor"} -C3L-00136.WXS.T.hg38 C3L-00136 UCEC WXS tumor CPT0000730008 0da07c96-e95e-45df-b12f-8c745696f271_gdc_realn.bam 32954610799 BAM harmonized CPTAC3 5fc17a22-c109-4f25-8902-a7d9b7642915 9c25d99b8282fc8ad1eb26a8508d5c23 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor"} -C3L-00137.MethArray.Green.T C3L-00137 UCEC Methylation_Array tumor CPT0002010008 202184900149_R01C01_Grn.idat 13676256 IDAT Green NA CPTAC3 7c8e6110-aaf4-493a-b649-98f314bb1190 ff394664b432fdd6f23e6d21cb09ee53 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor"} -C3L-00137.MethArray.Red.T C3L-00137 UCEC Methylation_Array tumor CPT0002010008 202184900149_R01C01_Red.idat 13676256 IDAT Red NA CPTAC3 cbb5af60-8eee-4d59-804b-325d00d5bfec 35fe0b0f21e220197f62abdf237438f6 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor"} -C3L-00137.miRNA-Seq.S35_L002_R1.T C3L-00137 UCEC miRNA-Seq tumor CPT0002010005 181012_UNC32-K00270_0124_AH223CBBXY_AGTTCC_S35_L002_R1_001.unaln.bam 284600384 BAM S35_L002_R1 unaligned CPTAC3 4644ebff-133e-4c08-a7ee-a57888d4acf0 f95a96deccc91a13cebe2cd72b736c7d {"aliquot_tag": "ALQ_c25293db", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00137.miRNA-Seq.T.hg38 C3L-00137 UCEC miRNA-Seq tumor CPT0002010005 75ac0619-947a-427b-a53f-71e121a7ec8f_mirnaseq_gdc_realn.bam 310978156 BAM harmonized CPTAC3 436ca6d8-561c-4ac3-8077-30d1aa510e0d cdd53adfa9360f2c9e524156c1700b14 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.chimeric.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.chimeric.gdc_realn.bam 111661327 BAM chimeric harmonized CPTAC3 c0c4168b-aa72-43d4-bd3b-88448f1bc2a9 3b8b17c9ece1cc2da127c458e94c9928 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.chimeric.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.chimeric.gdc_realn.bam 90356480 BAM chimeric harmonized CPTAC3 28b1e297-b833-40fd-8185-a477c4d05d93 e7be30e5ab401c8017e94af84cc2a48b {"aliquot_tag": "ALQ_14eed5d1", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.genomic.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.genomic.gdc_realn.bam 7612430365 BAM genomic harmonized CPTAC3 cf4cc61c-5abc-4329-bad3-fd4fcca47f5c e8483ebe6c8c82c6f2033e8e66990e97 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.genomic.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.genomic.gdc_realn.bam 4523089566 BAM genomic harmonized CPTAC3 46e4de25-8450-4523-89b0-df1c6c38385f d76ff2e2c50320a3e09b7ee107d93a5e {"aliquot_tag": "ALQ_14eed5d1", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.S12_L003_R1.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R1_001.fastq.gz 3659451903 FASTQ S12_L003_R1 unaligned CPTAC3 8fcdd6a1-a7c7-41b5-8b44-e41f2237b236 c009ef4a718199e56b76b314b6252819 {"aliquot_tag": "ALQ_c25293db", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.S12_L003_R2.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R2_001.fastq.gz 3840298846 FASTQ S12_L003_R2 unaligned CPTAC3 2bea607d-6eb2-4583-90d7-7823a3d8a572 7264544de78960e1773bb35f652fb4bf {"aliquot_tag": "ALQ_c25293db", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.S92_R1.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R1_001.fastq.gz 2473873691 FASTQ S92_R1 unaligned CPTAC3 4bb31dc9-9c0d-4032-a05c-10997413d28d 5d551e696736fb3eb8b398cccf421ff6 {"aliquot_tag": "ALQ_14eed5d1", "sample": "S92", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.S92_R2.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R2_001.fastq.gz 2521759872 FASTQ S92_R2 unaligned CPTAC3 b3448565-fb30-4f54-a941-ecae99962a3c 9af4e5313ae1916bf0b5975ed14387a1 {"aliquot_tag": "ALQ_14eed5d1", "sample": "S92", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.transcriptome.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.transcriptome.gdc_realn.bam 8146343649 BAM transcriptome harmonized CPTAC3 5ef83376-8d2d-4e0a-b00e-2d91055b9e28 a38961ce7edc46a01dc2802243d5c7c0 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor"} -C3L-00137.RNA-Seq.transcriptome.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.transcriptome.gdc_realn.bam 2109065484 BAM transcriptome harmonized CPTAC3 ff0ded32-92b7-496e-b118-6629dd80e594 9c177dc1784db7bf3cb4e31827b9078b {"aliquot_tag": "ALQ_14eed5d1", "gdc_sample_type": "Primary Tumor"} -C3L-00137.WGS.N C3L-00137 UCEC WGS blood_normal CPT0003870002 CPT0003870002.WholeGenome.RP-1303.bam 59288908302 BAM aligned CPTAC3 1dc96ac6-f13c-421b-8cc6-68d58d4e740c 67c64d41efaf035653e96fbae2319415 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal"} -C3L-00137.WGS.N.hg38 C3L-00137 UCEC WGS blood_normal CPT0003870002 552d7534-1fd1-490b-8751-9dff1bf55569_gdc_realn.bam 86049366669 BAM harmonized CPTAC3 3183b3b5-5fdf-4f74-928e-7493bd04c1eb 412f5e349680da4215538cf003320448 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal"} -C3L-00137.WGS.T C3L-00137 UCEC WGS tumor CPT0002010008 CPT0002010008.WholeGenome.RP-1303.bam 63923614074 BAM aligned CPTAC3 09368818-a40e-486e-9fa4-789a50ea0afd 77c613ebbee6db766b556aa5fb904a05 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor"} -C3L-00137.WGS.T.hg38 C3L-00137 UCEC WGS tumor CPT0002010008 6b8b5928-258f-4f93-9e52-516db4562c2d_gdc_realn.bam 93619436588 BAM harmonized CPTAC3 be294530-6817-4729-b01c-e2845ddabf79 82f9a6104193106a109be36f438eeca4 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor"} -C3L-00137.WXS.N C3L-00137 UCEC WXS blood_normal CPT0003870002 CPT0003870002.WholeExome.RP-1303.bam 21412104249 BAM aligned CPTAC3 3df85f07-ff4f-467f-aba1-12c26b93d210 f8d848142f5e13227eeff1b9a92e63d9 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal"} -C3L-00137.WXS.N.hg38 C3L-00137 UCEC WXS blood_normal CPT0003870002 552d7534-1fd1-490b-8751-9dff1bf55569_gdc_realn.bam 29560881189 BAM harmonized CPTAC3 d5a11391-8b84-4be2-8a8e-62d1e646b786 e18b8d08c4f912024ec8c517e2171d65 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal"} -C3L-00137.WXS.T C3L-00137 UCEC WXS tumor CPT0002010008 CPT0002010008.WholeExome.RP-1303.bam 34185650145 BAM aligned CPTAC3 7c411bd7-7536-4f0b-9ae9-0522c5888e35 1082139e92d67862eee05db52504ef24 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor"} -C3L-00137.WXS.T.hg38 C3L-00137 UCEC WXS tumor CPT0002010008 6b8b5928-258f-4f93-9e52-516db4562c2d_gdc_realn.bam 46556851624 BAM harmonized CPTAC3 24d0c8fa-2bb4-465b-96f7-680566a44c2f c3668448ad3b67eff00c2464e058fd9a {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor"} -C3L-00139.MethArray.Green.T C3L-00139 UCEC Methylation_Array tumor CPT0001850005 201557560005_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 cb62464e-ad33-4639-8792-319bc26bc562 726530f84d24e09aa30f3e963345bc08 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor"} -C3L-00139.MethArray.Red.T C3L-00139 UCEC Methylation_Array tumor CPT0001850005 201557560005_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 fd16e330-9ef3-42fc-85f7-791612a2a0a0 31521fd80b9817ee82ffd9a4a3a4dd3c {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor"} -C3L-00139.miRNA-Seq.S27_L002_R1.T C3L-00139 UCEC miRNA-Seq tumor CPT0001850008 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L002_R1_001.unaln.bam 289948718 BAM S27_L002_R1 unaligned CPTAC3 df7fd901-8ef2-4d72-9e1b-108dbf4d1c39 7efc9cd0865709ff73c3aa42bed2e969 {"aliquot_tag": "ALQ_94d8d156", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00139.miRNA-Seq.T.hg38 C3L-00139 UCEC miRNA-Seq tumor CPT0001850008 c11f3a98-b4e3-4323-882a-10ca43c5bbef_mirnaseq_gdc_realn.bam 313021111 BAM harmonized CPTAC3 1ec286c9-2013-489e-955b-ca46f413f278 1619bf13678b2fdd27da45224bf43b46 {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.chimeric.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.chimeric.gdc_realn.bam 107371273 BAM chimeric harmonized CPTAC3 0ddfbffa-bc3f-4443-b29e-86af7d423392 629e90443a81de28c7c571b51740bb64 {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.chimeric.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.chimeric.gdc_realn.bam 240722743 BAM chimeric harmonized CPTAC3 69123dcb-aa0e-41ab-a0db-a4a36e9fd3ca 23c1658888e971f244b4b7204995dabb {"aliquot_tag": "ALQ_6e2e86b1", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.genomic.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.genomic.gdc_realn.bam 8354592829 BAM genomic harmonized CPTAC3 3e33dc26-ec91-497e-8e25-c3ceb2b49b72 18c52f45717f8ef16caa2bd4d275f5f5 {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.genomic.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.genomic.gdc_realn.bam 11072108238 BAM genomic harmonized CPTAC3 cabe9716-5bae-452c-ae7b-da0166a75f28 e9875cc63f4483ea49638e23e2622519 {"aliquot_tag": "ALQ_6e2e86b1", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.S1_L001_R1.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4174922373 FASTQ S1_L001_R1 unaligned CPTAC3 7785d5a1-a60d-41f9-86f3-e4ebc100704c 685efdd279536e1199088a3dda3f9e9a {"aliquot_tag": "ALQ_94d8d156", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.S1_L001_R2.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4628430585 FASTQ S1_L001_R2 unaligned CPTAC3 90ced367-0342-4739-93b2-4b1a4af800c4 160e900b66558d503da084fd6a46d424 {"aliquot_tag": "ALQ_94d8d156", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.S32_R1.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R1_001.fastq.gz 6140390107 FASTQ S32_R1 unaligned CPTAC3 39beb660-c454-472e-ba02-0cd8b7fa200c b0bee4991162326e9fae8d0b44039007 {"aliquot_tag": "ALQ_6e2e86b1", "sample": "S32", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.S32_R2.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R2_001.fastq.gz 6349933131 FASTQ S32_R2 unaligned CPTAC3 408d7d83-438d-4766-843d-7675fc0860ea d317bc0847480fe86036b4a090cf9a84 {"aliquot_tag": "ALQ_6e2e86b1", "sample": "S32", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.transcriptome.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.transcriptome.gdc_realn.bam 9728983723 BAM transcriptome harmonized CPTAC3 1ceb9e47-84ff-4b0e-9bcc-aaff32d03022 86321e186a34b9c554d072eec520f84d {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor"} -C3L-00139.RNA-Seq.transcriptome.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.transcriptome.gdc_realn.bam 5026049957 BAM transcriptome harmonized CPTAC3 fbbfebbf-ae9a-4bc7-acf7-ecfd9758bde9 45eef9f4884db1410eedaf26902a0c43 {"aliquot_tag": "ALQ_6e2e86b1", "gdc_sample_type": "Primary Tumor"} -C3L-00139.WGS.N C3L-00139 UCEC WGS blood_normal CPT0003950002 CPT0003950002.WholeGenome.RP-1303.bam 136523255484 BAM aligned CPTAC3 c2c55bf8-07d6-4aeb-9170-e1cc2d2d62b5 0d514f28a8fbf15fce7d56ed39937aaa {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00139.WGS.N.hg38 C3L-00139 UCEC WGS blood_normal CPT0003950002 f72de443-e927-4cbf-a81d-3c906af657db_gdc_realn.bam 196412539714 BAM harmonized CPTAC3 eaab07a2-6162-4605-a1ba-8ff3a0bebb60 961dccc950b8be247a26dfa2246aa50c {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00139.WGS.T C3L-00139 UCEC WGS tumor CPT0001850005 CPT0001850005.WholeGenome.RP-1303.bam 136209044545 BAM aligned CPTAC3 e61d5d13-7a19-4187-981e-18c1afcd1a85 2b3748571fad2a48f4adbc2d9f9923c1 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor"} -C3L-00139.WGS.T.hg38 C3L-00139 UCEC WGS tumor CPT0001850005 41bf607b-596b-4c43-9cd5-f245cf6e15fe_gdc_realn.bam 195288370394 BAM harmonized CPTAC3 e8a2f8dd-5e48-4ebe-a47f-b933e330fd60 a3d1c8f769198212ffa5a54fdac52a73 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor"} -C3L-00139.WXS.N C3L-00139 UCEC WXS blood_normal CPT0003950002 CPT0003950002.WholeExome.RP-1303.bam 27148390008 BAM aligned CPTAC3 0b6c6926-2144-4a6d-adf3-8e91775ab83c a1e099a561464d2c6b844fd640820186 {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00139.WXS.N.hg38 C3L-00139 UCEC WXS blood_normal CPT0003950002 f72de443-e927-4cbf-a81d-3c906af657db_gdc_realn.bam 36915211881 BAM harmonized CPTAC3 3e395930-3001-49bf-95ca-7c96e0204b57 c79101c61b4e5e08735575ac3bc1ba92 {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00139.WXS.T C3L-00139 UCEC WXS tumor CPT0001850005 CPT0001850005.WholeExome.RP-1303.bam 38996148189 BAM aligned CPTAC3 b38279e5-8876-4c84-a1eb-7a4c215c5b63 438617b003c54b1069deb56dce9d654a {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor"} -C3L-00139.WXS.T.hg38 C3L-00139 UCEC WXS tumor CPT0001850005 41bf607b-596b-4c43-9cd5-f245cf6e15fe_gdc_realn.bam 53476418428 BAM harmonized CPTAC3 fb433f9d-bb8a-41e3-a5a0-997b16abd0fe 134a64d26b0b48f7e6af2e99f5babca7 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor"} -C3L-00140.MethArray.Green.A C3L-00140 LUAD Methylation_Array tissue_normal CPT0001810009 203027390078_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 24df4264-23c1-444d-929b-d50d1981fd1d 3c14ea212f3d5f30b74ca658d4981e30 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.MethArray.Green.T C3L-00140 LUAD Methylation_Array tumor CPT0001800005 201557560056_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e5815762-c027-4598-8f8f-491a68fea85d 21bf909344a966a7b2844b9f84a1fe65 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor"} -C3L-00140.MethArray.Red.A C3L-00140 LUAD Methylation_Array tissue_normal CPT0001810009 203027390078_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 64713670-5947-47b2-bd77-d3c111c9e8c9 2c3b8d40ec74245adc617e5a73debebf {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.MethArray.Red.T C3L-00140 LUAD Methylation_Array tumor CPT0001800005 201557560056_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 099483f9-6e51-45ef-928e-c4379ed7483a 6b6a20c0b1f8fb64d023223fcaf0e826 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor"} -C3L-00140.miRNA-Seq.A.hg38 C3L-00140 LUAD miRNA-Seq tissue_normal CPT0001810006 c097d901-143b-4ea4-bb0b-240fbe6bc862_mirnaseq_gdc_realn.bam 285628232 BAM harmonized CPTAC3 d28c6862-f37e-4e9b-9cc9-41aa2ec5157a 42c5503061fcbb3acf940acfebb59b10 {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.miRNA-Seq.S26_L002_R1.T C3L-00140 LUAD miRNA-Seq tumor CPT0001800008 181012_UNC32-K00270_0124_AH223CBBXY_ACAGTG_S26_L002_R1_001.unaln.bam 235880297 BAM S26_L002_R1 unaligned CPTAC3 a7009a8d-b48a-459c-81f7-e15971fd493a 08dcd112c9fba8835b3c806e03cf7625 {"aliquot_tag": "ALQ_5c385e26", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00140.miRNA-Seq.S28_L008_R1.A C3L-00140 LUAD miRNA-Seq tissue_normal CPT0001810006 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L008_R1_001.unaln.bam 261668762 BAM S28_L008_R1 unaligned CPTAC3 c9b8b2a9-4fd8-4061-a442-9c2ea10577de a83deaf6ecf9f07a23db32db17b8684b {"aliquot_tag": "ALQ_86e05a91", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.miRNA-Seq.T.hg38 C3L-00140 LUAD miRNA-Seq tumor CPT0001800008 3f67f903-8a57-48c9-aa0e-893412ed7cbb_mirnaseq_gdc_realn.bam 260201510 BAM harmonized CPTAC3 9df1d4ed-80aa-45d3-a0db-dfbc1c021a6a 9a2631ced61503f080e0e4a8486d6c10 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor"} -C3L-00140.RNA-Seq.chimeric.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.chimeric.gdc_realn.bam 117389400 BAM chimeric harmonized CPTAC3 b7920d02-c9a1-4ca5-8e50-087fb93d372b e74bf0fd22d6f5e41b69860a72c6ea34 {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.RNA-Seq.chimeric.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.chimeric.gdc_realn.bam 75470455 BAM chimeric harmonized CPTAC3 0f76a2e8-989c-450d-8600-5127c7fcc773 8eb563c994adfd9951a8250fc1d4a608 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor"} -C3L-00140.RNA-Seq.genomic.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.genomic.gdc_realn.bam 7301326470 BAM genomic harmonized CPTAC3 c3cfc7fb-bca6-44e5-98d3-4155b1cb83c0 efede67a5bcc5458735c5fba81841194 {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.RNA-Seq.genomic.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.genomic.gdc_realn.bam 8138447938 BAM genomic harmonized CPTAC3 149a23ec-044f-472c-8ec1-97c4567135c9 139f1c404f329a93d9732bd3804cc7e7 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor"} -C3L-00140.RNA-Seq.S2_L001_R1.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 3960123527 FASTQ S2_L001_R1 unaligned CPTAC3 84aeb05a-3f3e-4ef9-9ef5-85bd7a955626 0105a3319f5b8fb0ded08e10ad7ef8db {"aliquot_tag": "ALQ_5c385e26", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00140.RNA-Seq.S2_L001_R2.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4439192184 FASTQ S2_L001_R2 unaligned CPTAC3 7bd80abf-7ebf-475a-a875-e75809deada5 3c2483b293b6b483331fdcb7b6d5a91a {"aliquot_tag": "ALQ_5c385e26", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00140.RNA-Seq.S5_L002_R1.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R1_001.fastq.gz 3535142168 FASTQ S5_L002_R1 unaligned CPTAC3 c22122d5-c707-4b0a-873b-03bafa9d6373 9c9e92db4f169af477887e07c19feab9 {"aliquot_tag": "ALQ_86e05a91", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.RNA-Seq.S5_L002_R2.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R2_001.fastq.gz 3822989925 FASTQ S5_L002_R2 unaligned CPTAC3 48e9e1aa-da46-4ef8-8bb3-849c1e096850 889a044f9506aa166fed6d97523748e5 {"aliquot_tag": "ALQ_86e05a91", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.RNA-Seq.transcriptome.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.transcriptome.gdc_realn.bam 9271734756 BAM transcriptome harmonized CPTAC3 accd7efa-5523-4480-a8bc-1fd3163368fc 5ba4bbc7190789d01393edab64ed1a7d {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.RNA-Seq.transcriptome.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.transcriptome.gdc_realn.bam 11583695064 BAM transcriptome harmonized CPTAC3 f10d0d29-2675-419c-b5b6-37fc19a2e310 eac5b541283b97a5f100ee77934cb129 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor"} -C3L-00140.WGS.A C3L-00140 LUAD WGS tissue_normal CPT0001810009 CPT0001810009.WholeGenome.RP-1303.bam 52698744240 BAM aligned CPTAC3 d64d4ac4-c440-4bcf-8a64-4f7eeae51bbd 64dbbd61d8fa6f6f22796665570170e9 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.WGS.A.hg38 C3L-00140 LUAD WGS tissue_normal CPT0001810009 65540895-ccaa-40a2-ae4d-912f37356c1a_wgs_gdc_realn.bam 78009533362 BAM harmonized CPTAC3 a199b1e5-5139-4543-a8e4-fcfcebf60775 2cddb592b162dfbed58b7ca8bb1579a9 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.WGS.N C3L-00140 LUAD WGS blood_normal CPT0003960002 CPT0003960002.WholeGenome.RP-1303.bam 166874637864 BAM aligned CPTAC3 36882fe1-105b-41d9-a7ab-3f3c078c514a caab3024403180772c370c020649d928 {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal"} -C3L-00140.WGS.N.hg38 C3L-00140 LUAD WGS blood_normal CPT0003960002 d47d42c5-c6c1-4788-b66f-9e4eb2854c67_gdc_realn.bam 241077411568 BAM harmonized CPTAC3 0fafff35-2e4c-4f6e-8140-d839961a8379 d782912694c759bf7c3505be065ca474 {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal"} -C3L-00140.WGS.T C3L-00140 LUAD WGS tumor CPT0001800005 CPT0001800005.WholeGenome.RP-1303.bam 144252768053 BAM aligned CPTAC3 3be1750c-8327-47c1-aa09-94103dd50fcd 65c18767dd806c221bae4b77e34a00c9 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor"} -C3L-00140.WGS.T.hg38 C3L-00140 LUAD WGS tumor CPT0001800005 abd00977-e5b2-4ea2-9840-a0cbcc03e13c_gdc_realn.bam 208638607142 BAM harmonized CPTAC3 3848ef0d-faab-4e25-8922-159ce847fc23 5884da89a53b78a3508c126ae2309b8d {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor"} -C3L-00140.WXS.A C3L-00140 LUAD WXS tissue_normal CPT0001810009 CPT0001810009.WholeExome.RP-1303.bam 32340521211 BAM aligned CPTAC3 969b5dd2-b189-4f3d-a787-bd62f49eead7 9a7075afcaad21c3b59f6a91f744c5cd {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.WXS.A.hg38 C3L-00140 LUAD WXS tissue_normal CPT0001810009 65540895-ccaa-40a2-ae4d-912f37356c1a_wxs_gdc_realn.bam 43647007086 BAM harmonized CPTAC3 0c0313ce-2eb6-4ef7-b0d1-bd56323aba09 79ca94d30b9fd7076a71b895d63ea641 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00140.WXS.N C3L-00140 LUAD WXS blood_normal CPT0003960002 CPT0003960002.WholeExome.RP-1303.bam 32695746940 BAM aligned CPTAC3 b904410c-1fd2-4bb0-8009-5c13e58af1d4 c06da917ffa9b38f41e9334a9a44feed {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal"} -C3L-00140.WXS.N.hg38 C3L-00140 LUAD WXS blood_normal CPT0003960002 d47d42c5-c6c1-4788-b66f-9e4eb2854c67_gdc_realn.bam 44171055452 BAM harmonized CPTAC3 fe45ef91-129f-46ac-93b0-35a2c5dcd72d c910dfb62bb9a80cffd5033d41121927 {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal"} -C3L-00140.WXS.T C3L-00140 LUAD WXS tumor CPT0001800005 CPT0001800005.WholeExome.RP-1303.bam 29442643314 BAM aligned CPTAC3 be64f624-92d7-4757-b82f-66ffb1b35ed1 44f674c50573464baafb69eef105daa6 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor"} -C3L-00140.WXS.T.hg38 C3L-00140 LUAD WXS tumor CPT0001800005 abd00977-e5b2-4ea2-9840-a0cbcc03e13c_gdc_realn.bam 40943771958 BAM harmonized CPTAC3 0e90cce2-5f92-42fb-a908-20009bbcd4a0 56175fd4e6b5a28ec258a1b64e3c6168 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor"} -C3L-00143.MethArray.Green.T C3L-00143 UCEC Methylation_Array tumor CPT0001910012 201557560050_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c2c32dad-6099-42e8-9973-ab5f20d483ed 3a86dad74e0938dc02a239e2c4c0feda {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor"} -C3L-00143.MethArray.Red.T C3L-00143 UCEC Methylation_Array tumor CPT0001910012 201557560050_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 e5cceaf8-5555-4c76-996b-fd528b4db562 2cf03521ac3413c61571e49ca29a98c9 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor"} -C3L-00143.miRNA-Seq.S28_L002_R1.T C3L-00143 UCEC miRNA-Seq tumor CPT0001910008 181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L002_R1_001.unaln.bam 249275022 BAM S28_L002_R1 unaligned CPTAC3 f2254efa-2cbc-4b04-b8bb-e9bb070e2f31 63ac8d415b094a3db4e010fd59ba084e {"aliquot_tag": "ALQ_aa04a433", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00143.miRNA-Seq.T.hg38 C3L-00143 UCEC miRNA-Seq tumor CPT0001910008 861eae2d-bd5e-403c-babf-f7555093434d_mirnaseq_gdc_realn.bam 280086138 BAM harmonized CPTAC3 b340f64d-954f-4d24-9a84-b191d7811a4b 921fdf3c0c18d50f927390f2e8da8b53 {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.chimeric.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.chimeric.gdc_realn.bam 51352905 BAM chimeric harmonized CPTAC3 34b84b15-62e6-4122-92f5-d99a5d017e2f ea9cf55871025d1e4a2385f0c1680d47 {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.chimeric.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.chimeric.gdc_realn.bam 261111897 BAM chimeric harmonized CPTAC3 f10dfb3b-9686-41f9-a8cd-7301eb9f4ede 299b6d38b4e028ef48d859c46b876c94 {"aliquot_tag": "ALQ_d11e38d0", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.genomic.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.genomic.gdc_realn.bam 7045068204 BAM genomic harmonized CPTAC3 2f222b61-da36-4714-bc07-031f55557c67 ab4d6f65d6b03ca7c2272a856435237f {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.genomic.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.genomic.gdc_realn.bam 11869301324 BAM genomic harmonized CPTAC3 b5b88846-22aa-4d49-b490-79b77807abbe cb02fa95d3bde1311a098890bd138b0e {"aliquot_tag": "ALQ_d11e38d0", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.S4_L001_R1.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3552566535 FASTQ S4_L001_R1 unaligned CPTAC3 6412838b-2f70-4b14-a6ee-3c7baca09fb0 1ddb4365965318c7d264d91d7d67860b {"aliquot_tag": "ALQ_aa04a433", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.S4_L001_R2.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3901719535 FASTQ S4_L001_R2 unaligned CPTAC3 5d0a26e0-2739-4f38-9350-c685b44911d3 5477ff74d86c35fea3c93c1f862e1b8b {"aliquot_tag": "ALQ_aa04a433", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.S79_R1.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R1_001.fastq.gz 7457668481 FASTQ S79_R1 unaligned CPTAC3 01750b81-0d8b-4e20-97c8-5f0b9187fb22 b45c11f5e6e4654a9d65025c33f9276f {"aliquot_tag": "ALQ_d11e38d0", "sample": "S79", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.S79_R2.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R2_001.fastq.gz 7778507933 FASTQ S79_R2 unaligned CPTAC3 28cd52a0-bd1f-498b-a9f3-e8127475b8bd 393f2fc66b4598f5324e1cfe4e57475f {"aliquot_tag": "ALQ_d11e38d0", "sample": "S79", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.transcriptome.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.transcriptome.gdc_realn.bam 8263952666 BAM transcriptome harmonized CPTAC3 18404ddf-3ff3-4e0c-a4b3-fd80ff89373f fad98e7a896fc01fe6e8e8711c2df657 {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor"} -C3L-00143.RNA-Seq.transcriptome.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.transcriptome.gdc_realn.bam 6161381906 BAM transcriptome harmonized CPTAC3 3a6787f9-2ba0-4e35-9633-8eef881efa00 7ed7a3c85e98b74ba8a16b3582df00db {"aliquot_tag": "ALQ_d11e38d0", "gdc_sample_type": "Primary Tumor"} -C3L-00143.WGS.N C3L-00143 UCEC WGS blood_normal CPT0003970002 CPT0003970002.WholeGenome.RP-1303.bam 138410437612 BAM aligned CPTAC3 686e9641-ea5a-490c-b3ca-4373e0e6a76b 476cb8af9a6ffa7f48972486618caa1a {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00143.WGS.N.hg38 C3L-00143 UCEC WGS blood_normal CPT0003970002 c043b586-b3c2-4a81-a4f3-ccc22a2ec00d_gdc_realn.bam 200359369959 BAM harmonized CPTAC3 d4c330b5-d7f2-4f29-9002-e10479caa5ad e306de77507c37f3872e79ec7664c427 {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00143.WGS.T C3L-00143 UCEC WGS tumor CPT0001910012 CPT0001910012.WholeGenome.RP-1303.bam 128638627228 BAM aligned CPTAC3 f9ce1adc-bd1f-4a2e-89b2-5f30c1a76ac8 e61e966ed26bcd3b8492b1941807a647 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor"} -C3L-00143.WGS.T.hg38 C3L-00143 UCEC WGS tumor CPT0001910012 791db96f-984d-4482-bd0c-5691bef0b600_gdc_realn.bam 187360532420 BAM harmonized CPTAC3 699ff6b6-296d-4897-94c8-13d90dce5824 3e5569ccf68da2f4e572c7445291c7a3 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor"} -C3L-00143.WXS.N C3L-00143 UCEC WXS blood_normal CPT0003970002 CPT0003970002.WholeExome.RP-1303.bam 33346308113 BAM aligned CPTAC3 22657d1a-e86c-42ab-8d78-96ec68d47f81 a37880d19d7abc6a4da4c5303c532e0f {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00143.WXS.N.hg38 C3L-00143 UCEC WXS blood_normal CPT0003970002 c043b586-b3c2-4a81-a4f3-ccc22a2ec00d_gdc_realn.bam 44699785670 BAM harmonized CPTAC3 937a94b6-f52b-4bd0-a1e5-32b1d98e41ca f663e2897b22b251eaefc2aeeb4a3e95 {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00143.WXS.T C3L-00143 UCEC WXS tumor CPT0001910012 CPT0001910012.WholeExome.RP-1303.bam 28897594620 BAM aligned CPTAC3 2b9d0ef1-2613-4585-947b-bda648d9c758 aafc6b896e7a0a607a4c774931784bae {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor"} -C3L-00143.WXS.T.hg38 C3L-00143 UCEC WXS tumor CPT0001910012 791db96f-984d-4482-bd0c-5691bef0b600_gdc_realn.bam 39847331806 BAM harmonized CPTAC3 b44bbc36-16b3-431f-878e-c2f9110f580e 4e259305ca44fa2744ff67393ecabcb2 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.MethArray.Green.A C3L-00144 LUAD Methylation_Array tissue_normal CPT0001970009 203027390089_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 26f46096-2284-42f2-8e0a-4c7fb5a6e81e 46f64620c59fa1ae36b6c5d81ea32dcc {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.MethArray.Green.T C3L-00144 LUAD Methylation_Array tumor CPT0001960012 201557560005_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 22a6e242-e828-4c79-9603-bf898b02eb7d 6b0e024d059f8ecd7a7a8d513f179843 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.MethArray.Red.A C3L-00144 LUAD Methylation_Array tissue_normal CPT0001970009 203027390089_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 fd45c0b6-83ea-4e99-82b9-3b638ce91b5c 1c56657d1468f4353348bdbb5a9712a6 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.MethArray.Red.T C3L-00144 LUAD Methylation_Array tumor CPT0001960012 201557560005_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 3b7fa135-7355-4490-9308-c21559a3bcb1 4416b8e79bab876354e529cce63bbb7d {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.miRNA-Seq.A.hg38 C3L-00144 LUAD miRNA-Seq tissue_normal CPT0001970006 fe318230-76e7-45d2-ac6a-6ed497f9fe97_mirnaseq_gdc_realn.bam 226606364 BAM harmonized CPTAC3 7fce7759-7a59-4225-99bc-ff4c7fb9596c 30ca6c3d79fe9bc3bd98806ae9509be2 {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.miRNA-Seq.S29_L002_R1.T C3L-00144 LUAD miRNA-Seq tumor CPT0001960008 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L002_R1_001.unaln.bam 243494536 BAM S29_L002_R1 unaligned CPTAC3 1cfc0540-e547-4d25-b07d-efc52dc26886 5511d1a1ba79fe56a2447b5a6a8488dc {"aliquot_tag": "ALQ_18247823", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00144.miRNA-Seq.S29_L008_R1.A C3L-00144 LUAD miRNA-Seq tissue_normal CPT0001970006 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L008_R1_001.unaln.bam 207569976 BAM S29_L008_R1 unaligned CPTAC3 400425de-745d-426f-8ca0-b2d4addd8b00 aab52d3c3875cbb533ae2bf47088bf99 {"aliquot_tag": "ALQ_c2fc7c94", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.miRNA-Seq.T.hg38 C3L-00144 LUAD miRNA-Seq tumor CPT0001960008 7dd724fb-ad0a-4d76-adfc-ecccf45752bc_mirnaseq_gdc_realn.bam 264972717 BAM harmonized CPTAC3 139f48fc-cfb2-4876-adfc-264eea88e74a c0fe54405eba3dd655316380fee1b017 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor"} -C3L-00144.RNA-Seq.chimeric.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.chimeric.gdc_realn.bam 100871369 BAM chimeric harmonized CPTAC3 3ded4e49-7c01-40d5-b443-9a3b3cab9663 863bc8c7c1d3670bddda8d3ad0f4478f {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.RNA-Seq.chimeric.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.chimeric.gdc_realn.bam 114006005 BAM chimeric harmonized CPTAC3 da8024b3-3e22-4bf7-8ee4-193fb095020c ded7164ce2269bc1309da46027c44f69 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor"} -C3L-00144.RNA-Seq.genomic.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.genomic.gdc_realn.bam 6655943379 BAM genomic harmonized CPTAC3 671e72d6-fa5e-4dc0-a8ee-7119a73d13c4 1af60ea42c7122c84d115094c484514a {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.RNA-Seq.genomic.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.genomic.gdc_realn.bam 8564131775 BAM genomic harmonized CPTAC3 3feaeb70-1588-48cc-b0fe-e7ae3c4bb37b ba7afdac0b78eeffb2d7a34421a31556 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor"} -C3L-00144.RNA-Seq.S2_L002_R1.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R1_001.fastq.gz 2962348349 FASTQ S2_L002_R1 unaligned CPTAC3 28a0f947-13c5-4516-bf1f-5f19964a78fa 34dcc56269a61dc0274d1dee29d2c0cb {"aliquot_tag": "ALQ_c2fc7c94", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.RNA-Seq.S2_L002_R2.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R2_001.fastq.gz 3226200962 FASTQ S2_L002_R2 unaligned CPTAC3 61ddf30e-431b-4e87-b774-8ae1070bc7fe 00a9e8853ddc534b37bae5067162e6d3 {"aliquot_tag": "ALQ_c2fc7c94", "sample": "S2", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.RNA-Seq.S9_L003_R1.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R1_001.fastq.gz 3544821982 FASTQ S9_L003_R1 unaligned CPTAC3 e54b8655-54e3-4933-9ad2-5a09910426fd 2313681b18e646152debb07a68c4f100 {"aliquot_tag": "ALQ_18247823", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00144.RNA-Seq.S9_L003_R2.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R2_001.fastq.gz 3887899247 FASTQ S9_L003_R2 unaligned CPTAC3 6357ac54-9bdc-4da6-960b-0acd8769b0ee d5424c031c15b5dedd67f4626e7b5393 {"aliquot_tag": "ALQ_18247823", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00144.RNA-Seq.transcriptome.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.transcriptome.gdc_realn.bam 7179348975 BAM transcriptome harmonized CPTAC3 a2f79991-45cc-4e93-b89f-03dfd1900ffb 0d2722c44a3352ba7caa14735b7d77fe {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.RNA-Seq.transcriptome.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.transcriptome.gdc_realn.bam 8594160186 BAM transcriptome harmonized CPTAC3 d09135b5-ac0a-4868-8bc7-cb56166044ca 1e2e1fdc1e51a8a44d3986a5d6883ff1 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor"} -C3L-00144.Targeted.T C3L-00144 LUAD Targeted_Sequencing tumor CPT0001960012 CPT0001960012.CustomSelection.RP-1303.PDO-18786.bam 4481877861 BAM aligned CPTAC3 21651781-960c-4a4a-9351-4242240d62f0 2c090902ae0dac5aa3c38b217296d010 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.Targeted.T.hg38 C3L-00144 LUAD Targeted_Sequencing tumor CPT0001960012 1e8747dc-15dd-4c9c-a3aa-710a61988f6a_targetedsequencing_gdc_realn.bam 6179574350 BAM harmonized CPTAC3 3afe6ca8-7627-409a-b243-a9f811e32c0a 42fcfbabc34a5d0f302581f53fab7a21 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.WGS.A C3L-00144 LUAD WGS tissue_normal CPT0001970009 CPT0001970009.WholeGenome.RP-1303.bam 61851541075 BAM aligned CPTAC3 252eb565-4897-417f-9ea1-0311b8290027 03eb9e1defdcdc37874037ffecb8593d {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.WGS.A.hg38 C3L-00144 LUAD WGS tissue_normal CPT0001970009 050920fd-6b40-490c-ac47-3f716cf5bac8_wgs_gdc_realn.bam 90854671627 BAM harmonized CPTAC3 50db1919-888d-40ef-84c5-d420dc6334bc 8fbb8f9b50007f17aa72cfb9dd869990 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.WGS.N C3L-00144 LUAD WGS blood_normal CPT0003980002 CPT0003980002.WholeGenome.RP-1303.bam 132323895611 BAM aligned CPTAC3 537a5e45-1aaa-4581-9bca-e5074255c2e0 4b5d7073de40378f0e2079a603aab402 {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal"} -C3L-00144.WGS.N.hg38 C3L-00144 LUAD WGS blood_normal CPT0003980002 9560d92b-1aef-49fb-8013-5db2e948ad93_gdc_realn.bam 192669392884 BAM harmonized CPTAC3 14d3d74b-7e7e-48d6-bad7-a45fa32e8212 973ab8a371766a83e3a75b1dc5e8a78b {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal"} -C3L-00144.WGS.T C3L-00144 LUAD WGS tumor CPT0001960012 CPT0001960012.WholeGenome.RP-1303.bam 152774681259 BAM aligned CPTAC3 d3b6baee-a63b-4799-a0ca-8e4243d55d6e f24bd547b6a371c708baa93857194f6b {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.WGS.T.hg38 C3L-00144 LUAD WGS tumor CPT0001960012 1e8747dc-15dd-4c9c-a3aa-710a61988f6a_gdc_realn.bam 221972457006 BAM harmonized CPTAC3 9c1df8d2-59e3-473d-8954-3e9108ee4505 46f5ae30c38e0a7553814f30de81f091 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.WXS.A C3L-00144 LUAD WXS tissue_normal CPT0001970009 CPT0001970009.WholeExome.RP-1303.bam 38329979252 BAM aligned CPTAC3 d26533e3-04c0-438e-bcb6-a6aac0a234f9 73507b1112792fa11e61dfe156fe9293 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.WXS.A.hg38 C3L-00144 LUAD WXS tissue_normal CPT0001970009 050920fd-6b40-490c-ac47-3f716cf5bac8_wxs_gdc_realn.bam 52209162917 BAM harmonized CPTAC3 82953c89-ef19-4068-9569-4a08170279ae 486c08dd0a102de2a5df81d898dde3d0 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00144.WXS.N C3L-00144 LUAD WXS blood_normal CPT0003980002 CPT0003980002.WholeExome.RP-1303.bam 29973029078 BAM aligned CPTAC3 57fd3913-181a-4674-8c85-713a8adbe531 a62e7ddd67dac49935837d8c46fcb790 {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal"} -C3L-00144.WXS.N.hg38 C3L-00144 LUAD WXS blood_normal CPT0003980002 9560d92b-1aef-49fb-8013-5db2e948ad93_gdc_realn.bam 40576237253 BAM harmonized CPTAC3 29122fed-92c5-4c19-9a04-15760d169b42 a5703e4bf4a3addaaa41975d6ee68b48 {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal"} -C3L-00144.WXS.T C3L-00144 LUAD WXS tumor CPT0001960012 CPT0001960012.WholeExome.RP-1303.bam 35915018972 BAM aligned CPTAC3 29ec5115-405d-49cb-91f2-d0bdca6d4973 e912c831527ec3c429d62403af7874ed {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00144.WXS.T.hg38 C3L-00144 LUAD WXS tumor CPT0001960012 1e8747dc-15dd-4c9c-a3aa-710a61988f6a_gdc_realn.bam 50288879480 BAM harmonized CPTAC3 367e1821-44cf-467e-a85a-acf580a60959 c714bf6733f9e8a3dfa7cd4649657453 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor"} -C3L-00145.MethArray.Green.T C3L-00145 UCEC Methylation_Array tumor CPT0002630009 202184990052_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cc18dc51-39d8-4a1e-9d9d-c0a03f6ff0a3 623cc82cf9340833d0596bd15780756e {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor"} -C3L-00145.MethArray.Red.T C3L-00145 UCEC Methylation_Array tumor CPT0002630009 202184990052_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 f5b16185-ca2b-4442-b4e6-29309b41028f 413d73798544ad095035de8eb6caf9ea {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor"} -C3L-00145.miRNA-Seq.S11_L005_R1.T C3L-00145 UCEC miRNA-Seq tumor CPT0002630006 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L005_R1_001.unaln.bam 243627542 BAM S11_L005_R1 unaligned CPTAC3 35c93f3e-930a-4658-ba59-6e71efca8a88 579223c53b0772c4a6e46825806fa86b {"aliquot_tag": "ALQ_f7c2721c", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00145.miRNA-Seq.T.hg38 C3L-00145 UCEC miRNA-Seq tumor CPT0002630006 2aa1a7c3-626f-4c8a-9717-4c101ce92488_mirnaseq_gdc_realn.bam 267471215 BAM harmonized CPTAC3 55dd35be-653a-4264-9e05-8d76e5f48ac2 e84c96315ae154d2e10ec3b9c966d774 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.chimeric.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.chimeric.gdc_realn.bam 58395710 BAM chimeric harmonized CPTAC3 6b60c10d-bbc9-4c50-96f1-9e9254fed33e 5d4b4360c2a8d5508b6a09b6656c6f05 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.chimeric.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.chimeric.gdc_realn.bam 82564088 BAM chimeric harmonized CPTAC3 b4472987-ea37-47d6-af91-cfa94a88f9a2 61bfa50ea190b17a6fc0d9e5620666fd {"aliquot_tag": "ALQ_6d92da64", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.genomic.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.genomic.gdc_realn.bam 7803407511 BAM genomic harmonized CPTAC3 a6470d86-374c-473d-89de-d6962e349a2f 8a793556abbef128133ba019e38185a5 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.genomic.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.genomic.gdc_realn.bam 3957129161 BAM genomic harmonized CPTAC3 3a1f66ea-6e19-4df6-b8f4-39c09b17fffa 720c71bbbd7fa6d13b47103bce893f11 {"aliquot_tag": "ALQ_6d92da64", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.S19_L005_R1.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R1_001.fastq.gz 3740187142 FASTQ S19_L005_R1 unaligned CPTAC3 1f5e3577-dbc5-46f7-8615-86887337a97e 484030a7cb73d048b6ecb091260c81d6 {"aliquot_tag": "ALQ_f7c2721c", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.S19_L005_R2.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R2_001.fastq.gz 3942541227 FASTQ S19_L005_R2 unaligned CPTAC3 1c7f3fd1-e321-45b0-8e70-7ecad29c0558 8ecc8f9dbb15c787054ed43bbedccf3a {"aliquot_tag": "ALQ_f7c2721c", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.S88_R1.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R1_001.fastq.gz 1981326537 FASTQ S88_R1 unaligned CPTAC3 80557067-49bd-4bd8-a44a-e919497268c7 e978c7283516463c702547d497a5dd21 {"aliquot_tag": "ALQ_6d92da64", "sample": "S88", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.S88_R2.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R2_001.fastq.gz 2006846413 FASTQ S88_R2 unaligned CPTAC3 18fd6f3b-dab4-40ae-8d60-b7cd1f40630c 75595d5bd74e85a61e10df775a59a9cf {"aliquot_tag": "ALQ_6d92da64", "sample": "S88", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.transcriptome.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.transcriptome.gdc_realn.bam 9643676586 BAM transcriptome harmonized CPTAC3 89a55d41-0845-4ae3-af77-71332c8f0439 5ef30bac9c03eeb20f60984c24e49503 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor"} -C3L-00145.RNA-Seq.transcriptome.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.transcriptome.gdc_realn.bam 1690175994 BAM transcriptome harmonized CPTAC3 7f7f5aa7-6adb-4d26-a93f-63dc1fc32d7e 0ae39af3cea1b56379c0505d45a4526f {"aliquot_tag": "ALQ_6d92da64", "gdc_sample_type": "Primary Tumor"} -C3L-00145.WGS.N C3L-00145 UCEC WGS blood_normal CPT0007990002 CPT0007990002.WholeGenome.RP-1303.bam 73827837704 BAM aligned CPTAC3 1515821d-e980-4795-a258-2e1e59a319d9 f25869629024f240ade1096f784d4d85 {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00145.WGS.N.hg38 C3L-00145 UCEC WGS blood_normal CPT0007990002 2a8535dc-eb5a-4517-a7be-6d52d87a4233_gdc_realn.bam 108256083425 BAM harmonized CPTAC3 f0c2d7a9-4236-4c49-84bc-2c02169339dd 457fc2f840d99e8b669ec4ceee002fb6 {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00145.WGS.T C3L-00145 UCEC WGS tumor CPT0002630009 CPT0002630009.WholeGenome.RP-1303.bam 66801846019 BAM aligned CPTAC3 aae699b2-cff6-4ec0-a1ea-6ce71f6938f0 aeef4b290a3103de1563386752e8d9b6 {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor"} -C3L-00145.WGS.T.hg38 C3L-00145 UCEC WGS tumor CPT0002630009 24d1cc36-8239-4162-a2c2-6448607a4620_gdc_realn.bam 97481677484 BAM harmonized CPTAC3 fe66b253-513c-4b4d-a0fc-abd808170301 d55b5245da83c68a082d930ebedb361e {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor"} -C3L-00145.WXS.N C3L-00145 UCEC WXS blood_normal CPT0007990002 CPT0007990002.WholeExome.RP-1303.bam 24870597436 BAM aligned CPTAC3 723c54f1-5177-40a6-bc94-db897dcafbb9 ceb4322c0d618d83af3d5e494112a7da {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00145.WXS.N.hg38 C3L-00145 UCEC WXS blood_normal CPT0007990002 2a8535dc-eb5a-4517-a7be-6d52d87a4233_gdc_realn.bam 33928443362 BAM harmonized CPTAC3 a4663b3f-7399-4fb6-b11b-536983006cac 1d0dd754436d6ca7cf27b93576e76af1 {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00145.WXS.T C3L-00145 UCEC WXS tumor CPT0002630009 CPT0002630009.WholeExome.RP-1303.bam 25562273149 BAM aligned CPTAC3 e636078c-c9d4-4b0f-8a07-7bd845ea72e3 5d96ed00b275881a5069346bda26c618 {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor"} -C3L-00145.WXS.T.hg38 C3L-00145 UCEC WXS tumor CPT0002630009 24d1cc36-8239-4162-a2c2-6448607a4620_gdc_realn.bam 34448653810 BAM harmonized CPTAC3 aabae279-c40a-4c09-92bc-e2f9d662eed7 7e832cb3b960c4cfc097244f4aa28d8c {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor"} -C3L-00156.MethArray.Green.T C3L-00156 UCEC Methylation_Array tumor CPT0002080008 202163550076_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a75695f1-5e23-49e1-81a3-dc2db4b751b9 c6e6f5eda64a6baddb62b9a6df775a77 {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor"} -C3L-00156.MethArray.Red.T C3L-00156 UCEC Methylation_Array tumor CPT0002080008 202163550076_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 57cdcabf-99c0-4d03-9e2d-a4f68d5eb1d9 f9681f2a776db509f0e525c9538f4b13 {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor"} -C3L-00156.miRNA-Seq.S36_L002_R1.T C3L-00156 UCEC miRNA-Seq tumor CPT0002080005 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L002_R1_001.unaln.bam 211426620 BAM S36_L002_R1 unaligned CPTAC3 b4fdcc29-5a4e-4c6b-b551-c367014c0e18 4cbbff5e427d5620b9d43201505dfd89 {"aliquot_tag": "ALQ_cf42f1aa", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00156.miRNA-Seq.T.hg38 C3L-00156 UCEC miRNA-Seq tumor CPT0002080005 2c10a2cf-1c4e-4111-a771-a7bbbead738a_mirnaseq_gdc_realn.bam 230696492 BAM harmonized CPTAC3 b4cfa8a8-b8d2-4869-bd7d-8781e67f3ce0 d29fa73fd73f8f66a60af7e8e47e9fd7 {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.chimeric.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.chimeric.gdc_realn.bam 112082522 BAM chimeric harmonized CPTAC3 69f98007-da86-4db7-bf22-7aefe7b7181c 797b5a2f6f2ea4784d181b89fdeffc78 {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.chimeric.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.chimeric.gdc_realn.bam 110716280 BAM chimeric harmonized CPTAC3 db78ec5c-802d-49f1-b998-d01777f5f648 75c9a87b4556c9471145188d7c91597e {"aliquot_tag": "ALQ_e2d22fc4", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.genomic.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.genomic.gdc_realn.bam 10561241753 BAM genomic harmonized CPTAC3 7306c0f3-d6e9-4173-8442-e6813a64ec38 c1396dd8504b7d7c7cb3f2350197bac4 {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.genomic.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.genomic.gdc_realn.bam 6292376760 BAM genomic harmonized CPTAC3 c0948887-e85e-431a-81a3-e3e92132f4c9 3fc3425935f673e9c31ae5f2ac13bb0e {"aliquot_tag": "ALQ_e2d22fc4", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.S16_L004_R1.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R1_001.fastq.gz 4437257327 FASTQ S16_L004_R1 unaligned CPTAC3 e1abab26-3582-4e7c-bbea-7cadbd0e36e5 48caf33885a7d3a87b5acc4083377d02 {"aliquot_tag": "ALQ_cf42f1aa", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.S16_L004_R2.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R2_001.fastq.gz 4884637755 FASTQ S16_L004_R2 unaligned CPTAC3 b92610bf-9bcd-4f26-948d-448f963586de b483162d57628860eed6a9f135a94c01 {"aliquot_tag": "ALQ_cf42f1aa", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.S41_R1.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R1_001.fastq.gz 3527121504 FASTQ S41_R1 unaligned CPTAC3 4329d865-b7eb-4a69-81c6-ad985d3d8903 9f2f9f3386d71dc6b034f56bbe3fa235 {"aliquot_tag": "ALQ_e2d22fc4", "sample": "S41", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.S41_R2.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R2_001.fastq.gz 3566698561 FASTQ S41_R2 unaligned CPTAC3 bab3f4fd-3c7b-4243-bb17-d654045d57e8 39c4e15b74a2257424b7530bb0a158b4 {"aliquot_tag": "ALQ_e2d22fc4", "sample": "S41", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.transcriptome.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.transcriptome.gdc_realn.bam 10205256389 BAM transcriptome harmonized CPTAC3 00276494-28e3-4f1e-85e0-0e855aba0c68 6e9636d90137e19a2377084d527d55ef {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor"} -C3L-00156.RNA-Seq.transcriptome.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.transcriptome.gdc_realn.bam 3028439459 BAM transcriptome harmonized CPTAC3 697d309e-54f6-42b8-a399-4a4f6e828068 eabb5e6153cf2209285c60d9dbe51758 {"aliquot_tag": "ALQ_e2d22fc4", "gdc_sample_type": "Primary Tumor"} -C3L-00156.WGS.N C3L-00156 UCEC WGS blood_normal CPT0004340002 CPT0004340002.WholeGenome.RP-1303.bam 64458479411 BAM aligned CPTAC3 e9941a9d-81c4-4a22-a8aa-b7a1adb43156 35594b8cdb9e5ec5d6a99cd5dad28f5b {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00156.WGS.N.hg38 C3L-00156 UCEC WGS blood_normal CPT0004340002 ee8e3dc1-6ec7-44fe-9e3e-a7455e9920ac_gdc_realn.bam 92962148927 BAM harmonized CPTAC3 75786b70-9e4a-42a8-892a-29812f7b0e20 601a4c556a29bfb9cfecd253f92d9d69 {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00156.WGS.T C3L-00156 UCEC WGS tumor CPT0002080008 CPT0002080008.WholeGenome.RP-1303.bam 62963631276 BAM aligned CPTAC3 537b957d-4f95-4ad5-b28e-744db945d383 2d882bf397c3b1790da6b6a534a9051f {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor"} -C3L-00156.WGS.T.hg38 C3L-00156 UCEC WGS tumor CPT0002080008 ed2b6a93-896d-4fc9-8e2b-00821b00fe58_gdc_realn.bam 92343052110 BAM harmonized CPTAC3 b2cf2d6b-1638-4d6b-8df3-8ebe30121041 82d90743fb0c903cd4bededf518d5f2d {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor"} -C3L-00156.WXS.N C3L-00156 UCEC WXS blood_normal CPT0004340002 CPT0004340002.WholeExome.RP-1303.bam 26158790565 BAM aligned CPTAC3 8df40c1d-ff3b-4889-aace-1174a97a7991 4a36c714194a52c19659daead89539e7 {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00156.WXS.N.hg38 C3L-00156 UCEC WXS blood_normal CPT0004340002 ee8e3dc1-6ec7-44fe-9e3e-a7455e9920ac_gdc_realn.bam 35735142458 BAM harmonized CPTAC3 a402cc2d-41ac-4d0a-ac99-3a014754fd49 e689934bba57a4c2e9f15a622cc53c9e {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00156.WXS.T C3L-00156 UCEC WXS tumor CPT0002080008 CPT0002080008.WholeExome.RP-1303.bam 19688315646 BAM aligned CPTAC3 48422f89-52d1-4a5c-b54d-80e512c1ab00 841d6b59490aacc0e938c7b0a90b9a6b {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor"} -C3L-00156.WXS.T.hg38 C3L-00156 UCEC WXS tumor CPT0002080008 ed2b6a93-896d-4fc9-8e2b-00821b00fe58_gdc_realn.bam 26988961538 BAM harmonized CPTAC3 799c73ad-e7de-45e6-9548-ac30072150e7 afc0484254a5e867617c3adb2277c870 {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor"} -C3L-00157.MethArray.Green.T C3L-00157 UCEC Methylation_Array tumor CPT0002560009 202163550007_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1e076203-8ca0-4049-b9b3-3c2795db459e c70590139b78138c9ec22576ada19a54 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor"} -C3L-00157.MethArray.Red.T C3L-00157 UCEC Methylation_Array tumor CPT0002560009 202163550007_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 c2e90180-e083-407d-b2d7-29b90490d8ca c9dc7ef8394343b606fd1c88565c21f0 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor"} -C3L-00157.miRNA-Seq.S10_L005_R1.T C3L-00157 UCEC miRNA-Seq tumor CPT0002560006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L005_R1_001.unaln.bam 202820559 BAM S10_L005_R1 unaligned CPTAC3 f42b0e6b-1e37-4212-a152-2462ef8c955b 1e81da7ab4910d2a25db82a5674fb14d {"aliquot_tag": "ALQ_b9b68fc2", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00157.miRNA-Seq.T.hg38 C3L-00157 UCEC miRNA-Seq tumor CPT0002560006 9d3713aa-1a35-4fb2-a27d-3fb86e7d9bc2_mirnaseq_gdc_realn.bam 238921381 BAM harmonized CPTAC3 132d4d66-6d64-421f-9ab6-69cedeac8534 3b98268049877f142e4b77a95c4ec690 {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor"} -C3L-00157.RNA-Seq.chimeric.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.chimeric.gdc_realn.bam 47268822 BAM chimeric harmonized CPTAC3 1a5bccc4-cfca-4c36-9a39-2b916471e74b 3fa7e84703b1c1d9605564e76ae49eec {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor"} -C3L-00157.RNA-Seq.genomic.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.genomic.gdc_realn.bam 8627951661 BAM genomic harmonized CPTAC3 d80aa7d8-88e0-4ab7-b34c-e30326ccc253 5744079ff4be1f9110f13a45f51c7703 {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor"} -C3L-00157.RNA-Seq.S17_L005_R1.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R1_001.fastq.gz 3814953845 FASTQ S17_L005_R1 unaligned CPTAC3 ea887db4-6dcb-4e75-b57f-5a0211fb4ba6 d7e9b2f56f5b5e69aa62f487307d7ce0 {"aliquot_tag": "ALQ_b9b68fc2", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00157.RNA-Seq.S17_L005_R2.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R2_001.fastq.gz 4116740879 FASTQ S17_L005_R2 unaligned CPTAC3 9dd491c3-794c-4f2d-8010-512c90360b1b fc2f0a6bee442fd9b05968d573b1d857 {"aliquot_tag": "ALQ_b9b68fc2", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00157.RNA-Seq.transcriptome.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.transcriptome.gdc_realn.bam 12180357979 BAM transcriptome harmonized CPTAC3 79a571cb-a6a3-40e7-8281-d0961e68cfc1 ca52263291ba490e3cc2fef897f00a3c {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor"} -C3L-00157.WGS.N C3L-00157 UCEC WGS blood_normal CPT0008040002 CPT0008040002.WholeGenome.RP-1303.bam 59993449555 BAM aligned CPTAC3 37c97c6f-16a9-49fd-b229-51906e952b33 16404cea8037b10973f3faa6c7c3e3ee {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal"} -C3L-00157.WGS.N.hg38 C3L-00157 UCEC WGS blood_normal CPT0008040002 8e4d5871-709e-49fa-aa5c-ab5e9060fca3_gdc_realn.bam 87407497914 BAM harmonized CPTAC3 4679e568-2b87-4f05-a67c-9d52f0143e05 fe81d6c5d2a21142600676627c4d0fdb {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal"} -C3L-00157.WGS.T C3L-00157 UCEC WGS tumor CPT0002560009 CPT0002560009.WholeGenome.RP-1303.bam 58835249688 BAM aligned CPTAC3 26a7ad97-9312-47fc-a98e-7fe77a556b6f fc1556303c6235e5bd2be0db16666566 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor"} -C3L-00157.WGS.T.hg38 C3L-00157 UCEC WGS tumor CPT0002560009 6fdfe226-a6b6-4836-a287-4b8b6e167e07_gdc_realn.bam 84892839149 BAM harmonized CPTAC3 a0a89248-1fe0-4b60-aaf3-49e1e971923d 9443749dda31ea5c61df77d943e7d3d1 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor"} -C3L-00157.WXS.N C3L-00157 UCEC WXS blood_normal CPT0008040002 CPT0008040002.WholeExome.RP-1303.bam 26510354868 BAM aligned CPTAC3 19057807-4b23-40a5-97bc-6dc121ea348f 8902fb759dd41a015b611c7cf03f92b5 {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal"} -C3L-00157.WXS.N.hg38 C3L-00157 UCEC WXS blood_normal CPT0008040002 8e4d5871-709e-49fa-aa5c-ab5e9060fca3_gdc_realn.bam 36889615521 BAM harmonized CPTAC3 6b7c566b-4693-4ea8-979c-26fb83949551 e2f4144ecd930d91c28a9756a2916794 {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal"} -C3L-00157.WXS.T C3L-00157 UCEC WXS tumor CPT0002560009 CPT0002560009.WholeExome.RP-1303.bam 39500297975 BAM aligned CPTAC3 1f04632b-6bf3-477f-b006-7bbad3ca9995 8c1b36a0b78c3dd39a48cc17227f6901 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor"} -C3L-00157.WXS.T.hg38 C3L-00157 UCEC WXS tumor CPT0002560009 6fdfe226-a6b6-4836-a287-4b8b6e167e07_gdc_realn.bam 53922266720 BAM harmonized CPTAC3 fc36eee8-07a4-4ff9-9a4c-5dab053b833b 071ef060fcefb327618657e1def9d278 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor"} -C3L-00161.MethArray.Green.T C3L-00161 UCEC Methylation_Array tumor CPT0070380007 202178770006_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 c1fc3d56-9bb6-4c3c-962c-f0f316912ad8 3ee924ae8e001a446882a64baa74a8dd {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor"} -C3L-00161.MethArray.Red.T C3L-00161 UCEC Methylation_Array tumor CPT0070380007 202178770006_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 510d3c1f-5245-42b6-be03-db0788b7c61d 8675854043439c099663b5be44dfd9f0 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor"} -C3L-00161.miRNA-Seq.S48_L008_R1.T C3L-00161 UCEC miRNA-Seq tumor CPT0070380010 181012_UNC32-K00270_0124_AH223CBBXY_CAACTA_S48_L008_R1_001.unaln.bam 246787224 BAM S48_L008_R1 unaligned CPTAC3 9532979f-9a23-423a-b904-341f8bcb4d9d 11e9d4efddd42798a09776554b2c486a {"aliquot_tag": "ALQ_bdfd5efa", "sample": "S48", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00161.miRNA-Seq.T.hg38 C3L-00161 UCEC miRNA-Seq tumor CPT0070380010 bc9b2cdc-e66c-4b21-93a4-f83a2f61c5e2_mirnaseq_gdc_realn.bam 274065847 BAM harmonized CPTAC3 f584b14f-36cc-495c-895b-3d7b0c2ff1ee 9df5f3564aa5f5ba22ea7a8492376f86 {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.chimeric.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.chimeric.gdc_realn.bam 178156830 BAM chimeric harmonized CPTAC3 454cf1f1-2367-479e-9f36-0e7862ca9aad b5701cdbae5c2c32fb9208a9bbfdf2ba {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.chimeric.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.chimeric.gdc_realn.bam 111594232 BAM chimeric harmonized CPTAC3 0deea618-b027-4361-b094-3fb55211668a 0f86c811ab74f5f57a3d980f66676eda {"aliquot_tag": "ALQ_c99cd63f", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.genomic.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.genomic.gdc_realn.bam 8293221158 BAM genomic harmonized CPTAC3 8c445589-5fd8-4445-a173-7554b817752e 1b6a6afc42c8350ba2f80b3ea899e230 {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.genomic.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.genomic.gdc_realn.bam 5294697129 BAM genomic harmonized CPTAC3 b9f11bf3-e1da-47c4-ad3a-58f9db4320ed be614c65715c42642816a0a5d1c5f1c0 {"aliquot_tag": "ALQ_c99cd63f", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.S6_L008_R1.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4123381187 FASTQ S6_L008_R1 unaligned CPTAC3 9e12b685-c46a-431b-bb9e-a90c6f7892ee 02437f3da56bd74fbe3cd4f416b6be0a {"aliquot_tag": "ALQ_bdfd5efa", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.S6_L008_R2.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4394831604 FASTQ S6_L008_R2 unaligned CPTAC3 787253e0-0877-4bfa-98f5-9a258f8e1b57 b59dd2025a6ca6dfe94fe19fe9954808 {"aliquot_tag": "ALQ_bdfd5efa", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.S93_R1.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R1_001.fastq.gz 3660244988 FASTQ S93_R1 unaligned CPTAC3 a0ee2093-06c0-4ed6-a6f0-077b500b16e7 139a38001c31221ae95a235fcf4d0a4c {"aliquot_tag": "ALQ_c99cd63f", "sample": "S93", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.S93_R2.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R2_001.fastq.gz 3782759768 FASTQ S93_R2 unaligned CPTAC3 e9b68d40-d4ac-45b2-9c77-f5dd93260f41 96fc8c70018cfcdca028a20df00f4ead {"aliquot_tag": "ALQ_c99cd63f", "sample": "S93", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.transcriptome.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.transcriptome.gdc_realn.bam 11207030390 BAM transcriptome harmonized CPTAC3 e9753bfd-edd8-4b90-94c8-aa5b3c8e73c8 e5a56fe1c57163bae5f834696b638440 {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor"} -C3L-00161.RNA-Seq.transcriptome.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.transcriptome.gdc_realn.bam 4085358595 BAM transcriptome harmonized CPTAC3 308f2c10-e27d-4e24-96a9-e9665f1972e8 dccf6663327634eb067797fc665de665 {"aliquot_tag": "ALQ_c99cd63f", "gdc_sample_type": "Primary Tumor"} -C3L-00161.WGS.N C3L-00161 UCEC WGS blood_normal CPT0070970002 CPT0070970002.WholeGenome.RP-1303.bam 56251859993 BAM aligned CPTAC3 ac0f1a57-086b-4668-8f3f-0f549d2f5e6b 73db9c5ef334869a8b556d609dbcbf83 {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00161.WGS.N.hg38 C3L-00161 UCEC WGS blood_normal CPT0070970002 86fb70f6-d13a-4fdf-80eb-a744902cbec2_gdc_realn.bam 84199931615 BAM harmonized CPTAC3 e8353960-b692-41e4-b7c3-007b1d54f4a2 769a1fecb953500eb6387685fb9f0cda {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00161.WGS.T C3L-00161 UCEC WGS tumor CPT0070380007 CPT0070380007.WholeGenome.RP-1303.bam 58857967742 BAM aligned CPTAC3 b52e923b-79c8-4d2f-9b82-a81758ddd036 098f34e8fbb6e71c5ed8746128b65478 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor"} -C3L-00161.WGS.T.hg38 C3L-00161 UCEC WGS tumor CPT0070380007 a9ccc7bf-8b4f-43bb-90ce-d943ea5bac6e_gdc_realn.bam 88806918668 BAM harmonized CPTAC3 58d48892-e06c-4389-8a66-efe483c39f35 4498a3320ca2003995c1b6c311c72359 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor"} -C3L-00161.WXS.N C3L-00161 UCEC WXS blood_normal CPT0070970002 CPT0070970002.WholeExome.RP-1303.bam 36566771134 BAM aligned CPTAC3 b771d847-25d3-4767-877c-c88eedf7a1ee a71df1901492e918ec8a80b4818e6864 {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00161.WXS.N.hg38 C3L-00161 UCEC WXS blood_normal CPT0070970002 86fb70f6-d13a-4fdf-80eb-a744902cbec2_gdc_realn.bam 49963852449 BAM harmonized CPTAC3 47d0c160-601e-445d-b19e-77a5d20d623f 07cba430cfa762365af0fa0cb6a88291 {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00161.WXS.T C3L-00161 UCEC WXS tumor CPT0070380007 CPT0070380007.WholeExome.RP-1303.bam 22219230983 BAM aligned CPTAC3 6d9960f6-caae-4a5d-a9c2-b6307c9c6dba 6270d97bd6b841cd32f1cb128b5c6624 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor"} -C3L-00161.WXS.T.hg38 C3L-00161 UCEC WXS tumor CPT0070380007 a9ccc7bf-8b4f-43bb-90ce-d943ea5bac6e_gdc_realn.bam 30611297837 BAM harmonized CPTAC3 b6c8e44f-c2d4-4353-b4a2-8859e573da0b 41c6c721ba2375ad9be5de4fc2c05980 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor"} -C3L-00165.MethArray.Green.A C3L-00165 CCRCC Methylation_Array tissue_normal CPT0186410006 204930630107_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 233ce963-5cca-420f-8f57-fcaa1cb46a87 6f365a4a1cfaa6029f8ba69d26884596 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.MethArray.Green.T C3L-00165 CCRCC Methylation_Array tumor CPT0186400006 203219750071_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b82ccdd3-43e6-426f-939f-0e576aae8c81 bbd636145b5c09af6ec2a8a5c6c19355 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor"} -C3L-00165.MethArray.Red.A C3L-00165 CCRCC Methylation_Array tissue_normal CPT0186410006 204930630107_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 5837090d-1935-4151-9850-4b1a7c83f7b9 b056c6de26061c0f26e12ec77980912f {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.MethArray.Red.T C3L-00165 CCRCC Methylation_Array tumor CPT0186400006 203219750071_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 f7ee8b65-0b1c-4886-8a03-ebb691f09f2e 2e20fe67418aeaf4c17e7cf6652fa590 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor"} -C3L-00165.miRNA-Seq.A.hg38 C3L-00165 CCRCC miRNA-Seq tissue_normal CPT0186410009 6a4f21ea-1d2f-47f3-8e0a-bad1b0cc214d_mirnaseq_gdc_realn.bam 231389323 BAM harmonized CPTAC3 ab9343c6-4a1c-4b25-874c-b93cbf5345bd 2530a597eeffc6b3b75e52299399f622 {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.miRNA-Seq.S10_L001_R1.A C3L-00165 CCRCC miRNA-Seq tissue_normal CPT0186410009 190206_UNC31-K00269_0191_AH2WY5BBXY_GACGAC_S10_L001_R1_001.unaln.bam 205116660 BAM S10_L001_R1 unaligned CPTAC3 d96e398c-9c2c-4e78-aad3-b4420be1f8f3 2a5a41aa80be63223bbe55967e68c45f {"aliquot_tag": "ALQ_60a4b603", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.miRNA-Seq.S38_L005_R1.T C3L-00165 CCRCC miRNA-Seq tumor CPT0186400009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L005_R1_001.unaln.bam 218806146 BAM S38_L005_R1 unaligned CPTAC3 fe303846-577a-4997-8d8d-ba40ba3ec256 d5ed397d23d2c838a6af94de55c7c847 {"aliquot_tag": "ALQ_5dc49fb3", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00165.miRNA-Seq.T.hg38 C3L-00165 CCRCC miRNA-Seq tumor CPT0186400009 cfc7eb08-5492-4b10-9145-d08790666fa7_mirnaseq_gdc_realn.bam 240007072 BAM harmonized CPTAC3 5d09a045-e956-46bb-bf9f-f6e9ea439f97 c72ec3b28eca2a2660752aeed00d3557 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor"} -C3L-00165.RNA-Seq.chimeric.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.chimeric.gdc_realn.bam 157463378 BAM chimeric harmonized CPTAC3 2cc5bd56-bfec-425c-a471-5d6bb129774e 45401e1ec45208818e29fd658f0aa575 {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.RNA-Seq.chimeric.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.chimeric.gdc_realn.bam 31536693 BAM chimeric harmonized CPTAC3 dacfe6af-56da-457b-9c5d-691c0ae66d99 6b25b7c4ef8827e2a8c3e52c3ea481b3 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor"} -C3L-00165.RNA-Seq.genomic.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.genomic.gdc_realn.bam 9574666143 BAM genomic harmonized CPTAC3 4a841075-15aa-43de-898b-8916af9ae108 f8799d18b4da9dc48a9a2a3ff56ef7fb {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.RNA-Seq.genomic.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.genomic.gdc_realn.bam 7414171794 BAM genomic harmonized CPTAC3 06192d88-a249-4cd5-9db5-76fa9ab44985 0d5f22fdf53a97af10fb81005354adf0 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor"} -C3L-00165.RNA-Seq.S1_L001_R1.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R1_001.fastq.gz 4271712663 FASTQ S1_L001_R1 unaligned CPTAC3 1ca1d1d3-5991-4813-a874-ad3c597e8cb1 a935c54fd36ee7a5e4d518849da0ff98 {"aliquot_tag": "ALQ_60a4b603", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.RNA-Seq.S1_L001_R2.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R2_001.fastq.gz 4809428838 FASTQ S1_L001_R2 unaligned CPTAC3 91571914-4ac2-43d9-a36d-da56a6f6302f 6b051ce295c2dde90a8a1c61a70b7ba0 {"aliquot_tag": "ALQ_60a4b603", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.RNA-Seq.S6_L008_R1.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R1_001.fastq.gz 3497861052 FASTQ S6_L008_R1 unaligned CPTAC3 93af45b2-ef87-426d-90f3-0ba6a49db2cd 6412ad1ee7772ae607e24f7b3d91695c {"aliquot_tag": "ALQ_5dc49fb3", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00165.RNA-Seq.S6_L008_R2.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R2_001.fastq.gz 3737441772 FASTQ S6_L008_R2 unaligned CPTAC3 5c3699a8-1547-4721-afd1-ce7b6b255bae a8a2631e2754fd61805d4ef268a9f1ef {"aliquot_tag": "ALQ_5dc49fb3", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00165.RNA-Seq.transcriptome.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.transcriptome.gdc_realn.bam 9931131741 BAM transcriptome harmonized CPTAC3 d1c44201-d707-4909-9d36-c1f6f7ee0148 38f96d2f99e9050a7487b4f36eb44224 {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.RNA-Seq.transcriptome.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.transcriptome.gdc_realn.bam 9731555944 BAM transcriptome harmonized CPTAC3 7a7839ee-a10d-400b-a4ff-f6d675bfb181 f0ddb882ce2d2436116a4866b4471202 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor"} -C3L-00165.WGS.A C3L-00165 CCRCC WGS tissue_normal CPT0186410006 CPT0186410006.WholeGenome.RP-1303.bam 62757108017 BAM aligned CPTAC3 496a1cb5-14c0-483b-aa7f-a6efca09ac3a bd28e18de2f245a1110479d239edbfe1 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.WGS.A.hg38 C3L-00165 CCRCC WGS tissue_normal CPT0186410006 845de1bc-c19d-4e79-b659-8e94c54d890a_wgs_gdc_realn.bam 91595051026 BAM harmonized CPTAC3 deabddfe-8b5e-4228-be53-aeb271aad4f6 80d67c1bdef0e5ec76a833119f720ad2 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.WGS.N C3L-00165 CCRCC WGS blood_normal CPT0186540002 CPT0186540002.WholeGenome.RP-1303.bam 58444025148 BAM aligned CPTAC3 59a8677f-9a0a-45f1-9549-f65fe30ae060 657fee98f9946c677924070fefe6b741 {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00165.WGS.N.hg38 C3L-00165 CCRCC WGS blood_normal CPT0186540002 8b382730-80bf-4fd0-807b-06137f9e564d_wgs_gdc_realn.bam 86046739552 BAM harmonized CPTAC3 32b895ed-354d-4747-b4a0-ed92d73ab2b1 f8a58172954d0b9be12d2c84e7dd6d56 {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00165.WGS.T C3L-00165 CCRCC WGS tumor CPT0186400006 CPT0186400006.WholeGenome.RP-1303.bam 55110228436 BAM aligned CPTAC3 1132213f-8e46-4913-a46d-76ac000aed7a a8ff83ceda7ceb4ffb9bdb99511c7150 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor"} -C3L-00165.WGS.T.hg38 C3L-00165 CCRCC WGS tumor CPT0186400006 4bbcfd54-13ca-4f7b-a8f2-ff49b327a4cd_wgs_gdc_realn.bam 80412354616 BAM harmonized CPTAC3 e2bbeaa6-b347-4a7b-9947-9a87a6cda050 7809baa3e987ce5e259554197a5f0e9e {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor"} -C3L-00165.WXS.A C3L-00165 CCRCC WXS tissue_normal CPT0186410006 CPT0186410006.WholeExome.RP-1303.bam 28967966462 BAM aligned CPTAC3 c107df5d-6239-4595-b640-effe30bbb03a 11699804c0eef56b810c00fb14bd0553 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.WXS.A.hg38 C3L-00165 CCRCC WXS tissue_normal CPT0186410006 845de1bc-c19d-4e79-b659-8e94c54d890a_wxs_gdc_realn.bam 40249943363 BAM harmonized CPTAC3 bae91484-b8ee-4d49-81a1-0e8ff70155a4 d3a0993372bc501a01a17e7484f35f40 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00165.WXS.N C3L-00165 CCRCC WXS blood_normal CPT0186540002 CPT0186540002.WholeExome.RP-1303.bam 26889634521 BAM aligned CPTAC3 d476d2a1-f97d-4cf2-9c21-daa49cc7744d 13c286b6b6bc10baeb68b14b1d75e533 {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00165.WXS.N.hg38 C3L-00165 CCRCC WXS blood_normal CPT0186540002 8b382730-80bf-4fd0-807b-06137f9e564d_wxs_gdc_realn.bam 37188205117 BAM harmonized CPTAC3 d940c53e-cebf-4ef6-84d2-75b562f72801 778e64d4c4c6c629a98de2766c3f5d2e {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00165.WXS.T C3L-00165 CCRCC WXS tumor CPT0186400006 CPT0186400006.WholeExome.RP-1303.bam 25266615925 BAM aligned CPTAC3 db89efc7-0471-47be-bc68-286e7f38447c 37b52af434f1d193843573f295029c3a {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor"} -C3L-00165.WXS.T.hg38 C3L-00165 CCRCC WXS tumor CPT0186400006 4bbcfd54-13ca-4f7b-a8f2-ff49b327a4cd_wxs_gdc_realn.bam 35025434522 BAM harmonized CPTAC3 21303863-14ad-425a-9c44-a4520670c95e effd2cd11642420c6658239baaac7cc6 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor"} -C3L-00183.MethArray.Green.T C3L-00183 CCRCC Methylation_Array tumor CPT0066470010 202184900140_R05C01_Grn.idat 13676261 IDAT Green NA CPTAC3 3c846f4c-e401-49bf-82c5-b5c59011e23f d3e17861dfd7b29921f982c6486d2f9b {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor"} -C3L-00183.MethArray.Red.T C3L-00183 CCRCC Methylation_Array tumor CPT0066470010 202184900140_R05C01_Red.idat 13676261 IDAT Red NA CPTAC3 d61f0e73-8c94-44c0-8945-f66ed59511e7 406153147cf6320087bd5361b6160d8d {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor"} -C3L-00183.miRNA-Seq.S32_L004_R1.T C3L-00183 CCRCC miRNA-Seq tumor CPT0066470007 181113_UNC31-K00269_0164_AH23NNBBXY_ACTTGA_S32_L004_R1_001.unaln.bam 310938237 BAM S32_L004_R1 unaligned CPTAC3 c03341ef-04e3-49c4-b043-68512e1d634d 7c9f6830374ecce72d9506d04005015e {"aliquot_tag": "ALQ_aad68d5", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00183.miRNA-Seq.T.hg38 C3L-00183 CCRCC miRNA-Seq tumor CPT0066470007 16fb7b4b-f3b6-4346-b6cd-d1699bcdfbee_mirnaseq_gdc_realn.bam 346567455 BAM harmonized CPTAC3 6d7e26fb-a0ef-4642-bee7-fdb666c3e459 6b779674376c106242e4e1a0e47a541b {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor"} -C3L-00183.RNA-Seq.chimeric.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.chimeric.gdc_realn.bam 27766425 BAM chimeric harmonized CPTAC3 26c0e9c9-d919-4dcd-8aed-6fead9be65a6 cc07c8e0a759827bf8b8c1ec93cffa6b {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor"} -C3L-00183.RNA-Seq.genomic.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.genomic.gdc_realn.bam 6978350735 BAM genomic harmonized CPTAC3 c729c68a-1ff5-45af-8f8a-5d48e944553e 2ef73e8222d8dd05bf3595b9764cef2d {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor"} -C3L-00183.RNA-Seq.S16_L004_R1.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R1_001.fastq.gz 3350745323 FASTQ S16_L004_R1 unaligned CPTAC3 27bf8e37-426b-496f-8d9c-6ccc7c80b2f6 7ca067b09ef0dc310312523956720b0d {"aliquot_tag": "ALQ_aad68d5", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00183.RNA-Seq.S16_L004_R2.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R2_001.fastq.gz 3625849342 FASTQ S16_L004_R2 unaligned CPTAC3 96db17cb-b531-47b3-98fc-a86921831781 f104151b9ec6f535fd1d8f2910359a20 {"aliquot_tag": "ALQ_aad68d5", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00183.RNA-Seq.transcriptome.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.transcriptome.gdc_realn.bam 8568426428 BAM transcriptome harmonized CPTAC3 833314d6-355a-4c72-8cde-4c16dcfac66d a07437671bfdf7fb9594c877cc512533 {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor"} -C3L-00183.WGS.N C3L-00183 CCRCC WGS blood_normal CPT0070990002 CPT0070990002.WholeGenome.RP-1303.bam 67564483904 BAM aligned CPTAC3 b0c161c6-6fba-44be-bd64-1c31546075cb 4b10017086437fd5b4bfbd843224dd27 {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal"} -C3L-00183.WGS.N.hg38 C3L-00183 CCRCC WGS blood_normal CPT0070990002 dc74a374-6b12-4fd0-a4c4-4c261d93d256_gdc_realn.bam 100466078962 BAM harmonized CPTAC3 27c6f904-4480-4061-a7a0-fcbc39769da3 202891f935103696da57109962b1ce13 {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal"} -C3L-00183.WGS.T C3L-00183 CCRCC WGS tumor CPT0066470010 CPT0066470010.WholeGenome.RP-1303.bam 74232777433 BAM aligned CPTAC3 e1a95163-1d2b-4e4e-b4fe-68efba073ce8 7716909c0f9d11c5bf9d8227d72d02c8 {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor"} -C3L-00183.WGS.T.hg38 C3L-00183 CCRCC WGS tumor CPT0066470010 abe6c89c-34ab-4037-800a-e638f9dca8f5_gdc_realn.bam 109694799386 BAM harmonized CPTAC3 ad8048b7-703c-4e28-a054-f028abc49615 9d069b0b81fd9d848a6f2e06fb862bcf {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor"} -C3L-00183.WXS.N C3L-00183 CCRCC WXS blood_normal CPT0070990002 CPT0070990002.WholeExome.RP-1303.bam 29579806247 BAM aligned CPTAC3 f7978cff-b4a3-4c81-b74a-a2336b158d15 d2e7d5ba8f1fef83d21f0d2fb7085a32 {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal"} -C3L-00183.WXS.N.hg38 C3L-00183 CCRCC WXS blood_normal CPT0070990002 dc74a374-6b12-4fd0-a4c4-4c261d93d256_gdc_realn.bam 41364954086 BAM harmonized CPTAC3 b78ee226-375e-43cf-bd46-2a708bc2e7e8 e1dcc08d789d0d6343e305500042a5dd {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal"} -C3L-00183.WXS.T C3L-00183 CCRCC WXS tumor CPT0066470010 CPT0066470010.WholeExome.RP-1303.bam 30795576114 BAM aligned CPTAC3 33fe377c-a171-418b-9df0-12cca2f968b3 d61caf32e999cab66e55f135c0a8afbc {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor"} -C3L-00183.WXS.T.hg38 C3L-00183 CCRCC WXS tumor CPT0066470010 abe6c89c-34ab-4037-800a-e638f9dca8f5_gdc_realn.bam 42305483169 BAM harmonized CPTAC3 86049840-8897-4861-9659-15ccdef9f2b2 524c364176dcc9ceddd7265fd547b427 {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor"} -C3L-00189.MethArray.Green.T C3L-00189 PDA Methylation_Array tumor CPT0081060010 202184990063_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d7153ed5-88c9-4b49-be4b-8aa9f92781bc 715cc4d1bb2c1a260e94d891c441e3e3 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor"} -C3L-00189.MethArray.Red.T C3L-00189 PDA Methylation_Array tumor CPT0081060010 202184990063_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 60a29b8f-f794-4e40-9ca4-620fbbbb3fc5 9431ff8a6646414d691389bca266e294 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor"} -C3L-00189.miRNA-Seq.S17_L001_R1.T C3L-00189 PDA miRNA-Seq tumor CPT0081060007 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L001_R1_001.unaln.bam 264208048 BAM S17_L001_R1 unaligned CPTAC3 7e8d49fc-bf8d-457a-8510-f0dc6d9218a6 4253d56d758376a14d98deb8c216db18 {"aliquot_tag": "ALQ_7c712fcf", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00189.miRNA-Seq.T.hg38 C3L-00189 PDA miRNA-Seq tumor CPT0081060007 abf4b7e1-0639-49f1-afcb-a7bbaba06766_mirnaseq_gdc_realn.bam 290752183 BAM harmonized CPTAC3 96d11e31-189a-41cb-b974-fe1bb58e8abf 8be7815b33db224be98e67b14c1677e9 {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor"} -C3L-00189.RNA-Seq.chimeric.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.chimeric.gdc_realn.bam 88435931 BAM chimeric harmonized CPTAC3 33a1e39e-d01d-421d-bfa4-eb3e05a25375 0c10dec13f40c1fc87b77a8bbe673198 {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor"} -C3L-00189.RNA-Seq.genomic.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.genomic.gdc_realn.bam 8642159963 BAM genomic harmonized CPTAC3 75aad7c3-5b10-416a-874a-9d5ef40c8d96 d8bb0ed9589f3cef2a5168e91847e7ae {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor"} -C3L-00189.RNA-Seq.S11_L003_R1.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3733769690 FASTQ S11_L003_R1 unaligned CPTAC3 beef0b1b-6b54-455b-914f-d774ee730e7b 60287ca7e875ea27b0336dd634563e8a {"aliquot_tag": "ALQ_7c712fcf", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00189.RNA-Seq.S11_L003_R2.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3871559073 FASTQ S11_L003_R2 unaligned CPTAC3 5f5f8487-0642-4731-8db7-e1e194bdb9f5 d272028dbe7ba96625b19448a02c1e89 {"aliquot_tag": "ALQ_7c712fcf", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00189.RNA-Seq.transcriptome.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.transcriptome.gdc_realn.bam 9734664026 BAM transcriptome harmonized CPTAC3 aa5ebc03-8d2c-4c5a-81bd-d750d11bc477 3dd5e2eaeb280c6ba87db48a98d83d0e {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor"} -C3L-00189.Targeted.T C3L-00189 PDA Targeted_Sequencing tumor CPT0081060010_1 CPT0081060010_1.CustomSelection.RP-1303.PDO-18786.bam 4649483802 BAM aligned CPTAC3 8c86649e-f00a-42c1-bc6a-9c9dd4052771 10a3267819ca05ad155ba7f1733493fc {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor"} -C3L-00189.Targeted.T.hg38 C3L-00189 PDA Targeted_Sequencing tumor CPT0081060010_1 9cb5b887-76b0-4202-8db8-b144665dc0e9_targetedsequencing_gdc_realn.bam 6707736616 BAM harmonized CPTAC3 cfece7cf-0ffd-4328-a9ba-30d718b088e2 3ee5d64106dbc536bc2640a2ea552aff {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor"} -C3L-00189.WGS.N C3L-00189 PDA WGS blood_normal CPT0081100002 CPT0081100002.WholeGenome.RP-1303.bam 64441785831 BAM aligned CPTAC3 8ab4f131-c646-41a9-a66b-5b525925854f d241407b40abfd6a87b684b72cf393e3 {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal"} -C3L-00189.WGS.N.hg38 C3L-00189 PDA WGS blood_normal CPT0081100002 7c72d1eb-35b2-4f3b-ac73-db99b0c1832c_gdc_realn.bam 96308933958 BAM harmonized CPTAC3 78aec529-8ed3-4b4f-9e78-37f02f82998f 5ebd0626ab7fd9e5b21672231dcdcbdd {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal"} -C3L-00189.WGS.T C3L-00189 PDA WGS tumor CPT0081060010 CPT0081060010.WholeGenome.RP-1303.bam 100619188858 BAM aligned CPTAC3 54f3a0fb-84b1-4813-869b-43f6688d0b5d a79243d21634d6e4505d3eba3d3257a0 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor"} -C3L-00189.WGS.T.hg38 C3L-00189 PDA WGS tumor CPT0081060010 89bd375b-f0de-4c53-bc3a-0857dd2a02ba_gdc_realn.bam 148094086812 BAM harmonized CPTAC3 c754b34f-3547-411c-8e38-fd847d23d130 e7cf6b49e9d398c1361d526721d78074 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor"} -C3L-00189.WXS.N C3L-00189 PDA WXS blood_normal CPT0081100002 CPT0081100002.WholeExome.RP-1303.bam 33951565918 BAM aligned CPTAC3 572ea897-40f1-49f0-a013-667fb33d50ab f2784d24812ee40122e7b0a22af067eb {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal"} -C3L-00189.WXS.N.hg38 C3L-00189 PDA WXS blood_normal CPT0081100002 7c72d1eb-35b2-4f3b-ac73-db99b0c1832c_gdc_realn.bam 46704002870 BAM harmonized CPTAC3 82b6d795-c960-42e3-a2f6-fa488f4f4d3e d0f1813631b2d4e3ceb3e5baea419791 {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal"} -C3L-00189.WXS.T C3L-00189 PDA WXS tumor CPT0081060010_1 CPT0081060010_1.WholeExome.RP-1303.bam 55508875305 BAM aligned CPTAC3 f310171f-7ff0-414e-944d-0eee7e17476f 5996eae44e64bba5baa9de9a69a5c813 {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor"} -C3L-00189.WXS.T C3L-00189 PDA WXS tumor CPT0081060010 CPT0081060010.WholeExome.RP-1303.bam 28264677188 BAM aligned CPTAC3 f4db8d6f-620d-472d-8183-9a6f23b533cd 35ecc9b40c151933d12549bd4ae35f7b {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor"} -C3L-00189.WXS.T.hg38 C3L-00189 PDA WXS tumor CPT0081060010_1 9cb5b887-76b0-4202-8db8-b144665dc0e9_wxs_gdc_realn.bam 75973237529 BAM harmonized CPTAC3 c472c8ca-7039-47a3-9c0b-cdfd52e24658 b6d0eeac3b94d343f2d8debf828fd157 {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor"} -C3L-00189.WXS.T.hg38 C3L-00189 PDA WXS tumor CPT0081060010 89bd375b-f0de-4c53-bc3a-0857dd2a02ba_gdc_realn.bam 38881407155 BAM harmonized CPTAC3 64daa7de-55e4-4e5c-8844-6e834137bc83 92f3a4cae9c0942745db7cddda214a4c {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor"} -C3L-00263.MethArray.Green.A C3L-00263 LUAD Methylation_Array tissue_normal CPT0011750008 203027390091_R01C01_Grn.idat 13676230 IDAT Green NA CPTAC3 04c477b4-5881-46ea-8cf2-84f95174ae3e 43d0122a2f2f4b351e514f25d8b1bd16 {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.MethArray.Green.T C3L-00263 LUAD Methylation_Array tumor CPT0011710007 202163530120_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a30fa96e-8720-4738-87e7-34afc186242f dece399d00c03730b63a4bde01ad6647 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor"} -C3L-00263.MethArray.Red.A C3L-00263 LUAD Methylation_Array tissue_normal CPT0011750008 203027390091_R01C01_Red.idat 13676230 IDAT Red NA CPTAC3 4e57b96b-e36b-40b0-89cd-84da3ef3e546 8ac3a3a929546d1993cffb4f89d57bdd {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.MethArray.Red.T C3L-00263 LUAD Methylation_Array tumor CPT0011710007 202163530120_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 e2ca967f-19e0-4b35-a3c4-592af20e0031 bbd22be4e2b9d39c71ab25cee0ef4fa1 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor"} -C3L-00263.miRNA-Seq.A.hg38 C3L-00263 LUAD miRNA-Seq tissue_normal CPT0011750005 6b23c9a8-f480-45b6-a054-840514ab97d7_mirnaseq_gdc_realn.bam 245841621 BAM harmonized CPTAC3 515106a0-7ad1-45e7-9a64-ccbc35367c14 52824ac468040924378ff79ed4c4701c {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.miRNA-Seq.S32_L004_R1.A C3L-00263 LUAD miRNA-Seq tissue_normal CPT0011750005 181108_UNC31-K00269_0162_AH255GBBXY_ACTTGA_S32_L004_R1_001.unaln.bam 217445694 BAM S32_L004_R1 unaligned CPTAC3 ae63a261-62c0-435b-8a08-f26d966174a9 62ae0ace598d4c8b4498b1f04c292049 {"aliquot_tag": "ALQ_d7951fa0", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.miRNA-Seq.S47_L004_R1.T C3L-00263 LUAD miRNA-Seq tumor CPT0011710010 181012_UNC32-K00270_0124_AH223CBBXY_GTGAAA_S47_L004_R1_001.unaln.bam 248165457 BAM S47_L004_R1 unaligned CPTAC3 6e9e76f6-3daf-4f5c-a0e8-feb8476c3024 1719ae94a26d3a7f683ea5b0a6aaafef {"aliquot_tag": "ALQ_4b647cae", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00263.miRNA-Seq.T.hg38 C3L-00263 LUAD miRNA-Seq tumor CPT0011710010 9016621d-4146-4c2a-8f95-916408a40415_mirnaseq_gdc_realn.bam 270374034 BAM harmonized CPTAC3 d7720850-e941-450c-a200-0edb35c86587 bcc994c563243d31c159279112ad9fd0 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor"} -C3L-00263.RNA-Seq.chimeric.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.chimeric.gdc_realn.bam 68561378 BAM chimeric harmonized CPTAC3 b05578d5-6fac-48d2-8a9b-fed9d64c7aea 0081659b064ec7c6485064bd83050c31 {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.RNA-Seq.chimeric.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.chimeric.gdc_realn.bam 100568975 BAM chimeric harmonized CPTAC3 5f7fbca8-a43f-47fa-9faf-da89e8f24e15 5ba6f2495754014bc740a0fc2bbb17b6 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor"} -C3L-00263.RNA-Seq.genomic.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.genomic.gdc_realn.bam 8110047094 BAM genomic harmonized CPTAC3 22e9cd27-64a8-4be8-b0ce-443f10110e14 bf34ef5b9b71e6a4bd79576c5c9bc146 {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.RNA-Seq.genomic.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.genomic.gdc_realn.bam 9633453397 BAM genomic harmonized CPTAC3 184bb0ec-a71a-426e-8fa4-86a3860fc7ff 5975e67f094a8263c2fde07ecffb3ab6 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor"} -C3L-00263.RNA-Seq.S1_L007_R1.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R1_001.fastq.gz 3923290884 FASTQ S1_L007_R1 unaligned CPTAC3 15b13260-897a-49f8-bcd4-e36d00b01952 7fda6d83453116a1457fc6b53f38b5b3 {"aliquot_tag": "ALQ_d7951fa0", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.RNA-Seq.S1_L007_R2.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R2_001.fastq.gz 4323645507 FASTQ S1_L007_R2 unaligned CPTAC3 5aba71bd-ce6b-45fc-a93f-9609d7dd8d36 727fb2e4f2872db09a224769db6c8ef4 {"aliquot_tag": "ALQ_d7951fa0", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.RNA-Seq.S2_L001_R1.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R1_001.fastq.gz 4314730041 FASTQ S2_L001_R1 unaligned CPTAC3 cc6bf841-0601-4903-9874-3baf8b90095d 6ec53e8709f56b3ce1e655c8be9c57eb {"aliquot_tag": "ALQ_4b647cae", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00263.RNA-Seq.S2_L001_R2.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R2_001.fastq.gz 4671472175 FASTQ S2_L001_R2 unaligned CPTAC3 57cef113-2cda-4f74-b94c-08e9a2c79a4d fa8fd1fe146225ee1673bf8436233b7c {"aliquot_tag": "ALQ_4b647cae", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00263.RNA-Seq.transcriptome.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.transcriptome.gdc_realn.bam 11070459868 BAM transcriptome harmonized CPTAC3 ce03d437-ab00-4ef4-8057-38ad9488a6f9 bebaa710cbc98b1dc74f4323bda3bcba {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.RNA-Seq.transcriptome.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.transcriptome.gdc_realn.bam 11568792638 BAM transcriptome harmonized CPTAC3 593c1d8c-8838-4292-93d2-4b4501bd79a3 ae702d4f1e9c0f22c39fc2e81b197159 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor"} -C3L-00263.WGS.N C3L-00263 LUAD WGS blood_normal CPT0012420002 CPT0012420002.WholeGenome.RP-1303.bam 57732601088 BAM aligned CPTAC3 9bea6d11-641b-4bc7-ac05-d6a3ab0f5258 f1ac4b7e0b364f5241038f8f7c7456a5 {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00263.WGS.N.hg38 C3L-00263 LUAD WGS blood_normal CPT0012420002 2a51eed2-4a78-45ad-8209-d87968005886_gdc_realn.bam 83185306069 BAM harmonized CPTAC3 6590064c-552c-46e9-b432-1689f86250c1 e69ca90c6720ee2af0e5b43b915f85c9 {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00263.WGS.T C3L-00263 LUAD WGS tumor CPT0011710007 CPT0011710007.WholeGenome.RP-1303.bam 64669275017 BAM aligned CPTAC3 9a1dec1c-64d4-4232-baae-67dc00d18415 5785ad93153010168864b31e972c1984 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor"} -C3L-00263.WGS.T.hg38 C3L-00263 LUAD WGS tumor CPT0011710007 f0c8f826-d8fd-4c98-9717-6cca974055dc_gdc_realn.bam 93780859548 BAM harmonized CPTAC3 4312fc01-aaf2-4c9e-998a-4aaf2bbf37ff 2ad260abd8bb662015e0de1a4303ea11 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor"} -C3L-00263.WXS.A C3L-00263 LUAD WXS tissue_normal CPT0011750008 CPT0011750008.WholeExome.RP-1303.bam 30220145931 BAM aligned CPTAC3 9e6f0269-2a60-4da9-adb9-0a932d3b88fc e8d9e119e9be7a339fab45d7e3e37d7e {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.WXS.A.hg38 C3L-00263 LUAD WXS tissue_normal CPT0011750008 a8887a87-88db-47e9-9f1a-c49f75ac8d6a_wxs_gdc_realn.bam 41569850743 BAM harmonized CPTAC3 673f8519-8dac-477f-917b-6f80a0f2c271 88d4cab34854e682f48a153aaf984972 {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00263.WXS.N C3L-00263 LUAD WXS blood_normal CPT0012420002 CPT0012420002.WholeExome.RP-1303.bam 23762456667 BAM aligned CPTAC3 d2908439-b028-413a-9bcd-47b54a35c234 df0545c18a9928ed2290038b2ffbffbb {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00263.WXS.N.hg38 C3L-00263 LUAD WXS blood_normal CPT0012420002 2a51eed2-4a78-45ad-8209-d87968005886_gdc_realn.bam 32550839521 BAM harmonized CPTAC3 e00e1c39-2d9a-4cc3-98b4-1865ccf237ea cd3dd2464188b4ec0f5f39df6fe9c648 {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal"} -C3L-00263.WXS.T C3L-00263 LUAD WXS tumor CPT0011710007 CPT0011710007.WholeExome.RP-1303.bam 25435515814 BAM aligned CPTAC3 c2150250-a1f4-47f9-83d4-6ac798b2248f ffc433c45ff837fc5b15e4eae67b04f1 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor"} -C3L-00263.WXS.T.hg38 C3L-00263 LUAD WXS tumor CPT0011710007 f0c8f826-d8fd-4c98-9717-6cca974055dc_gdc_realn.bam 34897668803 BAM harmonized CPTAC3 f5f667d2-69bd-4d09-a03a-3cc9932bfcea 4b6d9dfe1ab977291dec24dad699160b {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor"} -C3L-00277.MethArray.Green.A C3L-00277 PDA Methylation_Array tissue_normal CPT0011540010 203561450100_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0b313bca-83ab-4697-b531-bec5ed9e7876 0a62cacfbf7a9eaffd6429d64f1be611 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00277.MethArray.Green.T C3L-00277 PDA Methylation_Array tumor CPT0011520006 202178770111_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 722a2690-7457-4024-841b-cd867b8d6c3f 61670a4a342e459cdc68fcbcd9c026fd {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor"} -C3L-00277.MethArray.Red.A C3L-00277 PDA Methylation_Array tissue_normal CPT0011540010 203561450100_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 3b5a1b08-ba1c-4c70-8f30-955798650cf5 819962c831fa7a43fe3e23c9e3089448 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00277.MethArray.Red.T C3L-00277 PDA Methylation_Array tumor CPT0011520006 202178770111_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 fb93588e-6fde-4ea9-a728-30f3b72d0673 36f66b22f7d17b766345694c42d73985 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor"} -C3L-00277.miRNA-Seq.S14_L001_R1.T C3L-00277 PDA miRNA-Seq tumor CPT0011520009 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 235999101 BAM S14_L001_R1 unaligned CPTAC3 316afba4-7e72-4cc3-bd61-a97f446cf36f 5ddb9ce7afb6201d719d0acec39425d4 {"aliquot_tag": "ALQ_21cb2e90", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00277.miRNA-Seq.T.hg38 C3L-00277 PDA miRNA-Seq tumor CPT0011520009 fcaf45f4-732b-403f-8aec-6bc44e26e703_mirnaseq_gdc_realn.bam 265445646 BAM harmonized CPTAC3 71b322f7-3927-4b7c-9562-c716c03dbb01 085f0243f294831a430a0dd4a7573ce8 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor"} -C3L-00277.RNA-Seq.chimeric.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.chimeric.gdc_realn.bam 93911055 BAM chimeric harmonized CPTAC3 fec42229-3b29-4790-81d7-70bef0c4e8a4 27d386a3be683fe7bf0e88a3b583e638 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor"} -C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.genomic.gdc_realn.bam 8057632753 BAM genomic harmonized CPTAC3 ed801705-746b-40d4-bb6d-44493abae816 8784ac32632b7c7affa3eaad56d48637 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor"} -C3L-00277.RNA-Seq.S4_L001_R1.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4216556912 FASTQ S4_L001_R1 unaligned CPTAC3 a08adf4b-e3f8-4377-869e-aa7ce258cbdf 3d5fd4700bf1158d192bfb0832f9f352 {"aliquot_tag": "ALQ_21cb2e90", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00277.RNA-Seq.S4_L001_R2.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R2_001.fastq.gz 4554252121 FASTQ S4_L001_R2 unaligned CPTAC3 12732716-1c43-41b3-9def-bffbe95e960b 99c464003b2810b5ee1da3ea33e7f40c {"aliquot_tag": "ALQ_21cb2e90", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00277.RNA-Seq.transcriptome.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.transcriptome.gdc_realn.bam 11688766873 BAM transcriptome harmonized CPTAC3 650938b7-16ef-4e23-8cd6-e416fe51d5de b9baea6918ed486476e1476560118817 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor"} -C3L-00277.Targeted.T C3L-00277 PDA Targeted_Sequencing tumor CPT0011520006_1 CPT0011520006_1.CustomSelection.RP-1303.PDO-18786.bam 3986545820 BAM aligned CPTAC3 90a6040d-6b8f-4e6e-9b92-cd0f1af9024b f7b72f2f15fa4dd808292ee191a02fb3 {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor"} -C3L-00277.Targeted.T.hg38 C3L-00277 PDA Targeted_Sequencing tumor CPT0011520006_1 58cdfc92-0d6b-46b3-94dd-28f1a5a247dd_targetedsequencing_gdc_realn.bam 5721713322 BAM harmonized CPTAC3 3d53590b-be46-4b35-906f-071f1156ce0a 4f495977eb19ea1d37a6c2a8d3bc551e {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor"} -C3L-00277.WGS.A C3L-00277 PDA WGS tissue_normal CPT0011540010 CPT0011540010.WholeGenome.RP-1303.bam 56527078367 BAM aligned CPTAC3 6366d373-ecbd-4ede-851f-898ef16e2dec ae7dbd017aad061ba693664764553c10 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00277.WGS.A.hg38 C3L-00277 PDA WGS tissue_normal CPT0011540010 c7dd538d-a66e-4698-8f58-d5c2f6863d0c_wgs_gdc_realn.bam 82522674490 BAM harmonized CPTAC3 bf7da377-8b18-4680-94f9-6eeea19620b7 106d139f2581096f2707bc2251890bfd {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00277.WGS.N C3L-00277 PDA WGS blood_normal CPT0012450002 CPT0012450002.WholeGenome.RP-1303.bam 63491090548 BAM aligned CPTAC3 196c3145-e1cf-401d-abb5-08bd97772545 067567c0684b8f0a39749fb9992bdd8d {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal"} -C3L-00277.WGS.N.hg38 C3L-00277 PDA WGS blood_normal CPT0012450002 596f83a1-5e9c-451b-9087-fbb18efe8447_gdc_realn.bam 95139814329 BAM harmonized CPTAC3 5a4be4e7-4ade-43d1-bf0d-05bf7f75f777 996d8cfc7d413793e7fc442a29e67801 {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal"} -C3L-00277.WGS.T C3L-00277 PDA WGS tumor CPT0011520006 CPT0011520006.WholeGenome.RP-1303.bam 81314543087 BAM aligned CPTAC3 e54a15bd-bfae-4908-88c4-a0d4440e3bc8 3d2440c4c14f04c2c872b0f430c59299 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor"} -C3L-00277.WGS.T.hg38 C3L-00277 PDA WGS tumor CPT0011520006 5d5bbdb1-74e4-4f1d-a025-df1959b77aa1_gdc_realn.bam 122527571156 BAM harmonized CPTAC3 fdc9052b-65b1-40bf-befd-3f8f2669f7b0 ded8082a70b002e2833239f97850d894 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor"} -C3L-00277.WXS.A C3L-00277 PDA WXS tissue_normal CPT0011540010 CPT0011540010.WholeExome.RP-1303.bam 28378209112 BAM aligned CPTAC3 7b344775-d99b-4b09-85ac-6e6e07afffcd 4368b04eab45b3cbb8cbf9078711e8b8 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00277.WXS.A.hg38 C3L-00277 PDA WXS tissue_normal CPT0011540010 c7dd538d-a66e-4698-8f58-d5c2f6863d0c_wxs_gdc_realn.bam 37935575374 BAM harmonized CPTAC3 d89c8782-bb0f-4521-95f6-3131321a9cbc 97e57b75aac6ac05cddea632d926b157 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00277.WXS.N C3L-00277 PDA WXS blood_normal CPT0012450002 CPT0012450002.WholeExome.RP-1303.bam 28800810674 BAM aligned CPTAC3 10206443-be9c-4768-853a-e83c11efd08d 951766d42ec63eef5138879c557aff09 {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal"} -C3L-00277.WXS.N.hg38 C3L-00277 PDA WXS blood_normal CPT0012450002 596f83a1-5e9c-451b-9087-fbb18efe8447_gdc_realn.bam 39387533918 BAM harmonized CPTAC3 19a7b0c7-b084-4936-8ffb-ebe9b8baf312 e032337143ef2f743f25936840aca425 {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal"} -C3L-00277.WXS.T C3L-00277 PDA WXS tumor CPT0011520006_1 CPT0011520006_1.WholeExome.RP-1303.bam 55645657340 BAM aligned CPTAC3 db5a4047-cc88-4497-ac9b-8cdbb98f8f78 61d2f9d1fb3dd8624c68972e19c1e23c {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor"} -C3L-00277.WXS.T C3L-00277 PDA WXS tumor CPT0011520006 CPT0011520006.WholeExome.RP-1303.bam 25387244764 BAM aligned CPTAC3 230e1d7b-f89c-42ff-8f51-bd51ce7f1766 0f444882caaa8b78b2474db53567f112 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor"} -C3L-00277.WXS.T.hg38 C3L-00277 PDA WXS tumor CPT0011520006_1 58cdfc92-0d6b-46b3-94dd-28f1a5a247dd_wxs_gdc_realn.bam 76363859370 BAM harmonized CPTAC3 5b6d0cc0-46f2-496c-8d5c-30b5a712ceaa c42b16534537e0a6200d02f457466995 {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor"} -C3L-00277.WXS.T.hg38 C3L-00277 PDA WXS tumor CPT0011520006 5d5bbdb1-74e4-4f1d-a025-df1959b77aa1_gdc_realn.bam 34758091873 BAM harmonized CPTAC3 0fc758f7-93a6-40f6-a12a-1fa472439af0 34ba83eefe360258ad925e44eb03138e {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor"} -C3L-00279.MethArray.Green.A C3L-00279 LUAD Methylation_Array tissue_normal CPT0082770009 203027390034_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c66954a9-b6fb-46c2-a281-eaf582088084 82b4f3347729758c147804dd982e4ad2 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.MethArray.Green.T C3L-00279 LUAD Methylation_Array tumor CPT0082740010 202178770143_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 6472fb36-b647-44c2-9bf4-57453ce681eb 27fb5e82796d8bd41f8eca46d1a55536 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor"} -C3L-00279.MethArray.Red.A C3L-00279 LUAD Methylation_Array tissue_normal CPT0082770009 203027390034_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 08d47b87-c26f-4ad4-978b-fd00f868264f f522601c590bbdc5f4ba324e0741ca47 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.MethArray.Red.T C3L-00279 LUAD Methylation_Array tumor CPT0082740010 202178770143_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 11ba1620-6b68-493c-931c-3a1432fa2f62 8550a180617dffe2d5ee8ce6f33c4d81 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor"} -C3L-00279.miRNA-Seq.A.hg38 C3L-00279 LUAD miRNA-Seq tissue_normal CPT0082770006 35d8a59b-4e7b-4090-b12d-f2fce976aa35_mirnaseq_gdc_realn.bam 245263335 BAM harmonized CPTAC3 0a55b1b4-b5f2-4037-bf32-49cd0a1a560d 7f3a3d157afab4cc0d4f63143878ee5a {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.miRNA-Seq.S18_L001_R1.T C3L-00279 LUAD miRNA-Seq tumor CPT0082740007 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L001_R1_001.unaln.bam 209147188 BAM S18_L001_R1 unaligned CPTAC3 498eed2b-842d-4c39-a99c-f105a0b38893 4d0ad81f1818b9dbf727c433023f28bb {"aliquot_tag": "ALQ_2a5c568a", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00279.miRNA-Seq.S4_L007_R1.A C3L-00279 LUAD miRNA-Seq tissue_normal CPT0082770006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L007_R1_001.unaln.bam 220228592 BAM S4_L007_R1 unaligned CPTAC3 3c229d35-9491-4ca4-b2c6-2a8223812843 c45f3b3a11cc1510fbd32449a0f8192c {"aliquot_tag": "ALQ_1afb1ccc", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.miRNA-Seq.T.hg38 C3L-00279 LUAD miRNA-Seq tumor CPT0082740007 192a1051-da95-41d3-9ca7-f2704c857f5d_mirnaseq_gdc_realn.bam 234785839 BAM harmonized CPTAC3 b36d884a-fa3c-4cab-ab28-d9fe444d32fd 86c7952b5e9670b9726b9be5f6f9970b {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor"} -C3L-00279.RNA-Seq.chimeric.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.chimeric.gdc_realn.bam 83062208 BAM chimeric harmonized CPTAC3 f5f62921-e2aa-4436-a7e8-60850f31affc cd2abe9d5049da5e9b433b255779e377 {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.RNA-Seq.chimeric.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.chimeric.gdc_realn.bam 100666935 BAM chimeric harmonized CPTAC3 33dd46e5-df91-4f8f-9e5e-c42bc33f5cc5 d03048da366074f5236f23d34f883984 {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor"} -C3L-00279.RNA-Seq.genomic.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.genomic.gdc_realn.bam 7580237623 BAM genomic harmonized CPTAC3 12397568-ded5-4062-8efe-53a261cb21a5 45489e68f8d747277b389a26a073f719 {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.RNA-Seq.genomic.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.genomic.gdc_realn.bam 9379188414 BAM genomic harmonized CPTAC3 f8b4a8b9-b839-40bc-ac42-2c640d7e2ebf f0c9fc25fcb6f2641ce5650a69771719 {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor"} -C3L-00279.RNA-Seq.S10_L003_R1.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 3888955869 FASTQ S10_L003_R1 unaligned CPTAC3 d2e501fe-3f46-4ec5-9e88-6ac1ebb6cac7 3071b4e394db6d1eac51244b89afe4e0 {"aliquot_tag": "ALQ_2a5c568a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00279.RNA-Seq.S10_L003_R2.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4222879215 FASTQ S10_L003_R2 unaligned CPTAC3 2a89b090-c1d9-42a7-b163-5e7b9569b885 de1ddd51f4e424075a8b79c9fd051f37 {"aliquot_tag": "ALQ_2a5c568a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00279.RNA-Seq.S18_L005_R1.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R1_001.fastq.gz 3747727741 FASTQ S18_L005_R1 unaligned CPTAC3 98db05ee-1271-42bc-84d4-5e6e88aa7a38 d00cf09e6305a2c7fdad358e0331d485 {"aliquot_tag": "ALQ_1afb1ccc", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.RNA-Seq.S18_L005_R2.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R2_001.fastq.gz 4128870042 FASTQ S18_L005_R2 unaligned CPTAC3 9d2b72b2-fcc1-4ab9-9f05-57bbd64646d9 6c06c2d73c84403ee106a7a9359e8241 {"aliquot_tag": "ALQ_1afb1ccc", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.RNA-Seq.transcriptome.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.transcriptome.gdc_realn.bam 10466754934 BAM transcriptome harmonized CPTAC3 ed7c6441-9e9a-4274-89eb-d4b226f5c5b2 bc1ae606fcc1a5c5881360755bbe0e95 {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.RNA-Seq.transcriptome.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.transcriptome.gdc_realn.bam 10361892037 BAM transcriptome harmonized CPTAC3 001c022d-cc33-42ac-82a5-f27163f80e1c e394db813ed07eb2b6a718bc944bbbf7 {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor"} -C3L-00279.WGS.A C3L-00279 LUAD WGS tissue_normal CPT0082770009 CPT0082770009.WholeGenome.RP-1303.bam 56073138564 BAM aligned CPTAC3 822f400f-0476-4e58-bfb5-fd796b3ef982 ef854be8bfd311bf79101178f62da7aa {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.WGS.A.hg38 C3L-00279 LUAD WGS tissue_normal CPT0082770009 59fb1c78-43fc-40d8-bdb5-4722c0670842_wgs_gdc_realn.bam 82603925963 BAM harmonized CPTAC3 5d8333a3-6e19-45b1-bbe8-a25e3e3d018c 1e52a862fee9631f5d15908165565cea {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.WGS.N C3L-00279 LUAD WGS blood_normal CPT0081730001 CPT0081730001.WholeGenome.RP-1303.bam 87832730629 BAM aligned CPTAC3 f4d2bb20-9dfa-439f-bcf8-7ead4a6cfa45 21a3fae4812bbe180c3c1fe7774be2a5 {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal"} -C3L-00279.WGS.N.hg38 C3L-00279 LUAD WGS blood_normal CPT0081730001 65e20a75-5878-465c-b516-43c5169cd45a_gdc_realn.bam 133995229320 BAM harmonized CPTAC3 22224aab-7f41-4ae5-8acd-a93d161cf396 d237f850620456d9df7b1c10574954b5 {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal"} -C3L-00279.WGS.T C3L-00279 LUAD WGS tumor CPT0082740010 CPT0082740010.WholeGenome.RP-1303.bam 68821389306 BAM aligned CPTAC3 fe94faf6-43c2-42c7-9d5f-38d4a5eb410d 2907c504ac791440872bbdbfaaf2e58d {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor"} -C3L-00279.WGS.T.hg38 C3L-00279 LUAD WGS tumor CPT0082740010 d974bcf0-cacc-4d3c-9ad7-c3851c1e2cb1_gdc_realn.bam 103365534756 BAM harmonized CPTAC3 1942b0b8-95ec-4524-b31c-f0a50f42708f cd4886dbebfc44b02481cbe742232bba {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor"} -C3L-00279.WXS.A C3L-00279 LUAD WXS tissue_normal CPT0082770009 CPT0082770009.WholeExome.RP-1303.bam 49620841842 BAM aligned CPTAC3 563908ac-7ad0-43fb-b22b-3dcac4288abe 4f7078dd9d52d8239599e62bbafeb569 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.WXS.A.hg38 C3L-00279 LUAD WXS tissue_normal CPT0082770009 59fb1c78-43fc-40d8-bdb5-4722c0670842_wxs_gdc_realn.bam 66944844275 BAM harmonized CPTAC3 c6774ea8-e4d7-443d-923b-f128be2ca46f ab01834f008e7dfde505b108f2388681 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00279.WXS.N C3L-00279 LUAD WXS blood_normal CPT0081730001 CPT0081730001.WholeExome.RP-1303.bam 24630195284 BAM aligned CPTAC3 97a73118-47cd-4efb-9be0-c5a5f8802300 8411595970107816a6f703253b2e216f {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal"} -C3L-00279.WXS.N.hg38 C3L-00279 LUAD WXS blood_normal CPT0081730001 65e20a75-5878-465c-b516-43c5169cd45a_gdc_realn.bam 33803250245 BAM harmonized CPTAC3 35dc37bc-38cf-4431-a8da-347eb39ce8df 2ee08eb494dc27cdb58bb577118603b0 {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal"} -C3L-00279.WXS.T C3L-00279 LUAD WXS tumor CPT0082740010 CPT0082740010.WholeExome.RP-1303.bam 37022818850 BAM aligned CPTAC3 2a48e41f-9b72-4b17-b59e-6c5b6faa5b10 7105919ed8e804c190de5d7eef4cd975 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor"} -C3L-00279.WXS.T.hg38 C3L-00279 LUAD WXS tumor CPT0082740010 d974bcf0-cacc-4d3c-9ad7-c3851c1e2cb1_gdc_realn.bam 52184801332 BAM harmonized CPTAC3 c83272c0-2512-416f-8d44-3b280bd3e8b8 bed6bd356718c9bf3b9e14e46ba79d96 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor"} -C3L-00356.ADD_eac742a4.miRNA-Seq.S9_L005_R1.T C3L-00356 UCEC miRNA-Seq tumor CPT0002130006 181012_UNC32-K00270_0124_AH223CBBXY_CCAACA_S9_L005_R1_001.unaln.bam 264043402 BAM S9_L005_R1 unaligned CPTAC3 fad45b6a-e837-4a4c-b65b-c65f366664bd 45b4263029dcfe885305ddcc6d3b33a0 {"aliquot_tag": "ADD_eac742a4", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00356.ADD_eac742a4.miRNA-Seq.T.hg38 C3L-00356 UCEC miRNA-Seq tumor CPT0002130006 65b95ebc-7fc3-4a49-b8e8-930e68ad8710_mirnaseq_gdc_realn.bam 294391082 BAM harmonized CPTAC3 f2ee8c90-1600-4fb8-99c8-d0b531bd94a2 694f6e0ede723c5f93aa108710eec8d3 {"aliquot_tag": "ADD_eac742a4", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3L-00356.MethArray.Green.T C3L-00356 UCEC Methylation_Array tumor CPT0002130009 202178770100_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 01f9e9ac-db9c-4837-90ba-75355af366a7 f2afb3a50b1b8ef9fe91e7110e61ddc7 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor"} -C3L-00356.MethArray.Red.T C3L-00356 UCEC Methylation_Array tumor CPT0002130009 202178770100_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 4837df20-40a4-4d73-8c5c-2a14cd71cb0a d304a18a6fe94182844258a201119f83 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor"} -C3L-00356.RNA-Seq.chimeric.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.chimeric.gdc_realn.bam 104640104 BAM chimeric harmonized CPTAC3 9ddb2b73-9be2-48e1-a16e-5344c4ad3024 10b07d21d2659886b8f647c0370fca6d {"aliquot_tag": "ALQ_83b6876a", "gdc_sample_type": "Primary Tumor"} -C3L-00356.RNA-Seq.genomic.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.genomic.gdc_realn.bam 13582643997 BAM genomic harmonized CPTAC3 2ee1a0a4-cfe5-4f08-a856-4dda30d08cb1 87a4ddf5cb17c31ee3ed03fa4b6f4caa {"aliquot_tag": "ALQ_83b6876a", "gdc_sample_type": "Primary Tumor"} -C3L-00356.RNA-Seq.S11_L004_R1.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R1_001.fastq.gz 5604511930 FASTQ S11_L004_R1 unaligned CPTAC3 4b2a33c2-3d9a-405c-9d10-049bed615f1d 09115960c3f3635f2ee6960cfa86f8b8 {"aliquot_tag": "ALQ_83b6876a", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00356.RNA-Seq.S11_L004_R2.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R2_001.fastq.gz 6002121294 FASTQ S11_L004_R2 unaligned CPTAC3 2e91202d-2403-4619-8111-5f26fdf879b1 b0da9f1e031dd59cc019bcc05eaad954 {"aliquot_tag": "ALQ_83b6876a", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00356.RNA-Seq.transcriptome.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.transcriptome.gdc_realn.bam 11120549827 BAM transcriptome harmonized CPTAC3 d2404a74-0221-4f69-ad88-eb2f5298a439 af7d6f69bbd420873811f88343cb35ec {"aliquot_tag": "ALQ_83b6876a", "gdc_sample_type": "Primary Tumor"} -C3L-00356.WGS.N C3L-00356 UCEC WGS blood_normal CPT0004350002 CPT0004350002.WholeGenome.RP-1303.bam 60372526845 BAM aligned CPTAC3 33cb8f29-0dd7-407b-9ca2-a361b0ecaab7 df40edaaa1c6d8c3a95b610eef8ef255 {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00356.WGS.N.hg38 C3L-00356 UCEC WGS blood_normal CPT0004350002 0d1a19ed-b1f4-4d0f-9eff-5922afcb6cbe_gdc_realn.bam 87764016454 BAM harmonized CPTAC3 8b2d66ef-8fc7-47b4-9717-2dc51259c0a6 808b584f1416372c7fdd76f3baed4b97 {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00356.WGS.T C3L-00356 UCEC WGS tumor CPT0002130009 CPT0002130009.WholeGenome.RP-1303.bam 62730697593 BAM aligned CPTAC3 ecca9891-f010-4571-99f2-591e8f983772 815a39265891bc7d83e6cfdb480f95b3 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor"} -C3L-00356.WGS.T.hg38 C3L-00356 UCEC WGS tumor CPT0002130009 e6e1c2a6-27c3-4d55-87ed-6cd0ab0fd6b6_gdc_realn.bam 91675515120 BAM harmonized CPTAC3 b841bd14-fc26-40a4-b89b-f7fc50cdc513 5ce2ebdf804a04e63051dab669a1a46d {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor"} -C3L-00356.WXS.N C3L-00356 UCEC WXS blood_normal CPT0004350002 CPT0004350002.WholeExome.RP-1303.bam 26356186952 BAM aligned CPTAC3 1a9a81f1-d4f9-4db8-803f-8257efa63abb 32ed9102277e4d4b468f6e01091c7f5f {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00356.WXS.N.hg38 C3L-00356 UCEC WXS blood_normal CPT0004350002 0d1a19ed-b1f4-4d0f-9eff-5922afcb6cbe_gdc_realn.bam 35793766827 BAM harmonized CPTAC3 b94ff0a4-127b-4fac-9a68-2ec50ce6c202 a159a0da836031f987c0d1084c039dd7 {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00356.WXS.T C3L-00356 UCEC WXS tumor CPT0002130009 CPT0002130009.WholeExome.RP-1303.bam 26328106268 BAM aligned CPTAC3 26d52a87-1615-499a-8ffc-16729ea129b8 085ca90980ab8d5a60ceba8852f20292 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor"} -C3L-00356.WXS.T.hg38 C3L-00356 UCEC WXS tumor CPT0002130009 e6e1c2a6-27c3-4d55-87ed-6cd0ab0fd6b6_gdc_realn.bam 36423305103 BAM harmonized CPTAC3 cece60fc-811e-4d03-9f7e-731f0b80212f 00d62ec2cee0878bdc28a571fd1bb609 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor"} -C3L-00358.MethArray.Green.T C3L-00358 UCEC Methylation_Array tumor CPT0002210008 202184990013_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 5bf0f27b-fb0e-480b-a461-5a0fb07010a8 7ca1c1209076196f77ba0925bb720cd7 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor"} -C3L-00358.MethArray.Red.T C3L-00358 UCEC Methylation_Array tumor CPT0002210008 202184990013_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 2ae3240a-5ddd-4267-a158-02e27793c242 b5d642a979dd2a26e0c0758b7a3c1097 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor"} -C3L-00358.miRNA-Seq.S37_L002_R1.T C3L-00358 UCEC miRNA-Seq tumor CPT0002210005 181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L002_R1_001.unaln.bam 221821577 BAM S37_L002_R1 unaligned CPTAC3 32ab23db-669b-4c4f-83e0-dd2394439677 6779356f6ad79bd5b3cfc85fe30ba9e6 {"aliquot_tag": "ALQ_8f9a32d0", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00358.miRNA-Seq.T.hg38 C3L-00358 UCEC miRNA-Seq tumor CPT0002210005 79817c85-0532-476f-808f-7898a666d88e_mirnaseq_gdc_realn.bam 240296343 BAM harmonized CPTAC3 b698d69a-25d6-42e5-a6f0-1126e960daab c81cc2012c5647af4ffc31d2b139ded9 {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.chimeric.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.chimeric.gdc_realn.bam 174960065 BAM chimeric harmonized CPTAC3 9f3d0be2-4644-4560-8e45-82643657157b 40d9d238ce6b1c8a2ac409860a302553 {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.chimeric.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.chimeric.gdc_realn.bam 225422123 BAM chimeric harmonized CPTAC3 ebe80478-0721-4dfc-a87a-ad3af1900e20 dd0eee63ac242092ce28af63745a8768 {"aliquot_tag": "ALQ_1a42eb75", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.genomic.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.genomic.gdc_realn.bam 7795991252 BAM genomic harmonized CPTAC3 7a112595-0e41-48b1-9116-98230107f6e9 b15e8ed0baf632c089d93d1d23de422d {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.genomic.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.genomic.gdc_realn.bam 12651700339 BAM genomic harmonized CPTAC3 b703471a-e131-4d58-843d-cf842c52f046 5c7783de6480b794de9487fc210465c9 {"aliquot_tag": "ALQ_1a42eb75", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.S2_L001_R1.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R1_001.fastq.gz 3627523273 FASTQ S2_L001_R1 unaligned CPTAC3 9cb3b6ce-7b2a-4225-b0e7-d32d47171740 8b45aa836ca5d2eb4c9973f35f084ceb {"aliquot_tag": "ALQ_8f9a32d0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.S2_L001_R2.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R2_001.fastq.gz 4010917518 FASTQ S2_L001_R2 unaligned CPTAC3 e9a087df-10b2-498e-90d3-cd60747088b8 61239bd1607ed0691c3e77b6b8b4cf69 {"aliquot_tag": "ALQ_8f9a32d0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.S50_R1.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R1_001.fastq.gz 8061916888 FASTQ S50_R1 unaligned CPTAC3 66b6b1d6-7e9d-492f-8570-d85868a65f2b 733a6c82b4e61adc47619b4ad40af325 {"aliquot_tag": "ALQ_1a42eb75", "sample": "S50", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.S50_R2.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R2_001.fastq.gz 8453682484 FASTQ S50_R2 unaligned CPTAC3 d8b10f25-cf80-40cc-a3fe-e742556dfbd3 f9a993f886d3a439bcedb2ba34287223 {"aliquot_tag": "ALQ_1a42eb75", "sample": "S50", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.transcriptome.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.transcriptome.gdc_realn.bam 7751677585 BAM transcriptome harmonized CPTAC3 8de1e515-c337-4ce1-9747-d4257e0f6ed9 ca2a53a402e536e103b733de21ded148 {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor"} -C3L-00358.RNA-Seq.transcriptome.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.transcriptome.gdc_realn.bam 8266821493 BAM transcriptome harmonized CPTAC3 6431c0af-6fd1-4d01-9cdb-0defdc5c8d5d f7e53e39ba5869e4d89b42e3aa1c9e93 {"aliquot_tag": "ALQ_1a42eb75", "gdc_sample_type": "Primary Tumor"} -C3L-00358.WGS.N C3L-00358 UCEC WGS blood_normal CPT0004360002 CPT0004360002.WholeGenome.RP-1303.bam 57760979190 BAM aligned CPTAC3 d9717e6e-907b-43b2-be30-373b71c15f45 53e48324486fb3d19a579e5a187275f6 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00358.WGS.N.hg38 C3L-00358 UCEC WGS blood_normal CPT0004360002 8927cd25-7348-4319-8a9b-248fc0bc8e56_gdc_realn.bam 82314231902 BAM harmonized CPTAC3 bb62f2d2-b146-490a-bc13-b209c265d28d 836ee3fb801a75e299dd150fd9cb9fb5 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00358.WGS.T C3L-00358 UCEC WGS tumor CPT0002210008 CPT0002210008.WholeGenome.RP-1303.bam 63609725003 BAM aligned CPTAC3 02106d84-e6b8-465a-a063-a4e0e156d8c0 9b17dd421f56ac06ae0b1d844618b857 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor"} -C3L-00358.WGS.T.hg38 C3L-00358 UCEC WGS tumor CPT0002210008 ea49ecce-a8c3-410f-987b-07364fee8b18_gdc_realn.bam 92797415662 BAM harmonized CPTAC3 573df828-ddd8-43e5-9dc2-513911ee977f e9e5886106cab48ccb2f6d6178ff22c0 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor"} -C3L-00358.WXS.N C3L-00358 UCEC WXS blood_normal CPT0004360002 CPT0004360002.WholeExome.RP-1303.bam 24864786714 BAM aligned CPTAC3 4a96af62-483c-4bbc-bb86-eb38f5d37251 164f8987fb50c846c644f657e42f6a38 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00358.WXS.N.hg38 C3L-00358 UCEC WXS blood_normal CPT0004360002 8927cd25-7348-4319-8a9b-248fc0bc8e56_gdc_realn.bam 34941943089 BAM harmonized CPTAC3 70b053c6-05af-43b7-8393-bef10a4390a9 2239c348e2be0b164dcfd806ebc26b44 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00358.WXS.T C3L-00358 UCEC WXS tumor CPT0002210008 CPT0002210008.WholeExome.RP-1303.bam 22931743863 BAM aligned CPTAC3 768ceeea-3dfe-4365-81f8-25219f36a8de 122e6128bc08e61dff4b8fb2a6dc439e {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor"} -C3L-00358.WXS.T.hg38 C3L-00358 UCEC WXS tumor CPT0002210008 ea49ecce-a8c3-410f-987b-07364fee8b18_gdc_realn.bam 31448310154 BAM harmonized CPTAC3 15b5f6c6-6f94-43c2-951c-72df48f24ee2 637adcf4e1eeb0d7b66cd92ee0cbf338 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor"} -C3L-00359.MethArray.Green.T C3L-00359 CCRCC Methylation_Array tumor CPT0002270008 202176300039_R01C01_Grn.idat 13676225 IDAT Green NA CPTAC3 a89361b3-b27a-440c-97cc-f60a679c2cba 328e69a46dbc39a7e11c0dceb7b1a73c {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor"} -C3L-00359.MethArray.Red.T C3L-00359 CCRCC Methylation_Array tumor CPT0002270008 202176300039_R01C01_Red.idat 13676225 IDAT Red NA CPTAC3 15d70e8e-f96c-4d54-bb28-8e2796344ef8 220cbf5b37c650d104d6bfb2f92c74db {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor"} -C3L-00359.miRNA-Seq.S38_L002_R1.T C3L-00359 CCRCC miRNA-Seq tumor CPT0002270005 181012_UNC32-K00270_0124_AH223CBBXY_GTAGAG_S38_L002_R1_001.unaln.bam 189457572 BAM S38_L002_R1 unaligned CPTAC3 31af2861-46e8-4151-a58f-43d10ee462f0 c4596c0eaa5e586bda7a1df7ba99efd5 {"aliquot_tag": "ALQ_dac770", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00359.miRNA-Seq.T.hg38 C3L-00359 CCRCC miRNA-Seq tumor CPT0002270005 7208770e-fb7d-4ba3-8fe9-f457970e5a93_mirnaseq_gdc_realn.bam 206009268 BAM harmonized CPTAC3 650ac773-2699-4276-8545-6d688853fe1b f3ae69bbe4b864e45fcf5bc34689c983 {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor"} -C3L-00359.RNA-Seq.chimeric.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.chimeric.gdc_realn.bam 165366678 BAM chimeric harmonized CPTAC3 40f3b415-51a0-4663-8538-1283aaefe8f9 42c8e6dc2bd48b1e987a86567a7cdfc2 {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor"} -C3L-00359.RNA-Seq.genomic.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.genomic.gdc_realn.bam 8466214599 BAM genomic harmonized CPTAC3 cf3e24cf-45bc-4202-8c95-392fceaacd63 9737b1ef704b8c09ffde2c2ea7625ead {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor"} -C3L-00359.RNA-Seq.S1_L001_R1.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R1_001.fastq.gz 4039086396 FASTQ S1_L001_R1 unaligned CPTAC3 c073cb50-b34c-44c9-9cd8-8f208cead367 6c29c74f79ce54494d283377e1397496 {"aliquot_tag": "ALQ_dac770", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00359.RNA-Seq.S1_L001_R2.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R2_001.fastq.gz 4454016060 FASTQ S1_L001_R2 unaligned CPTAC3 031a45c7-e9b4-40e1-b98c-b8beed82aceb cd054cad63ab3c3e232d253d89d8a078 {"aliquot_tag": "ALQ_dac770", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00359.RNA-Seq.transcriptome.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.transcriptome.gdc_realn.bam 11666861023 BAM transcriptome harmonized CPTAC3 4647ae5d-25a5-48e5-8f15-0c3d444a6386 8c9ba466d86dd1f968d95059f5f8b70a {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor"} -C3L-00359.scRNA-Seq.S2_L002_R1.T C3L-00359 CCRCC scRNA-Seq tumor CPT0002270014 20220127_WUSTL_TWFU-CPT0002270014-Y1N1Z1_1Bn1_1_GCGGGTAAGT+TAGCACTAAG_S2_L002_R1_001.fastq.gz 7547280130 FASTQ S2_L002_R1 unaligned CPTAC3 d45a535b-43f6-464b-a147-822226dffe47 86f3f2c6ea254f8fc2ea6ae0da4dcc7e {"aliquot_tag": "ALQ_6ec6c6a7", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00359.scRNA-Seq.S2_L002_R2.T C3L-00359 CCRCC scRNA-Seq tumor CPT0002270014 20220127_WUSTL_TWFU-CPT0002270014-Y1N1Z1_1Bn1_1_GCGGGTAAGT+TAGCACTAAG_S2_L002_R2_001.fastq.gz 26570671557 FASTQ S2_L002_R2 unaligned CPTAC3 f1ac3437-676f-4f1f-9131-2f5c385d4688 ab0617133de2356ec8f3be1da955c50d {"aliquot_tag": "ALQ_6ec6c6a7", "sample": "S2", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00359.WGS.N C3L-00359 CCRCC WGS blood_normal CPT0004370002 CPT0004370002.WholeGenome.RP-1303.bam 57925172115 BAM aligned CPTAC3 e04ccac1-20a8-4b59-9734-8faa65a50ec4 8499ddb19b7b7bed443def520446675f {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00359.WGS.N.hg38 C3L-00359 CCRCC WGS blood_normal CPT0004370002 20ce17ce-fd19-4ec9-b64a-e95dd78aa155_gdc_realn.bam 84679395846 BAM harmonized CPTAC3 933fff32-75ec-45f1-a2d4-8ac2a99fdd60 2dcf143dc2534b72d14f4a88253f42d1 {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00359.WGS.T C3L-00359 CCRCC WGS tumor CPT0002270008 CPT0002270008.WholeGenome.RP-1303.bam 65220878541 BAM aligned CPTAC3 d234fee4-2d8e-4948-938e-b67922f1a814 d8900b6aec9d439e3d38b28447d2f701 {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor"} -C3L-00359.WGS.T.hg38 C3L-00359 CCRCC WGS tumor CPT0002270008 2eb1196d-5e6d-4223-953c-d558c75a8c2e_gdc_realn.bam 95102675354 BAM harmonized CPTAC3 38b72a67-e3fa-4a28-8000-23a1060e99a6 a91aa206ac1f08dd69b7617794ceaf5e {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor"} -C3L-00359.WXS.N C3L-00359 CCRCC WXS blood_normal CPT0004370002 CPT0004370002.WholeExome.RP-1303.bam 25506475593 BAM aligned CPTAC3 dcd5744a-5938-49a8-bd50-2cc5c3ec1044 35c925d73d9502d0d755a3ad5716bff0 {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00359.WXS.N.hg38 C3L-00359 CCRCC WXS blood_normal CPT0004370002 20ce17ce-fd19-4ec9-b64a-e95dd78aa155_gdc_realn.bam 35162318768 BAM harmonized CPTAC3 84236427-4959-4a6d-8b0a-4f80fcc5ca45 f253077dbeed4d455c406897302d5b92 {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00359.WXS.T C3L-00359 CCRCC WXS tumor CPT0002270008 CPT0002270008.WholeExome.RP-1303.bam 27439755361 BAM aligned CPTAC3 330583e4-6af5-442c-92de-637ea9dd0ec4 80072fe7433fdaa2883f770b57e5b230 {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor"} -C3L-00359.WXS.T.hg38 C3L-00359 CCRCC WXS tumor CPT0002270008 2eb1196d-5e6d-4223-953c-d558c75a8c2e_gdc_realn.bam 37339559252 BAM harmonized CPTAC3 fb5de978-c7e1-4cf9-b900-71bfed890af5 280f27720c5c8f500105c360b48e1999 {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor"} -C3L-00360.MethArray.Green.A C3L-00360 CCRCC Methylation_Array tissue_normal CPT0002370014 204930640108_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 92838844-c7d2-47f7-836d-305db581e42a af122801613da8cc52148e5e7603e427 {"aliquot_tag": "ALQ_a59a1502", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.MethArray.Green.T C3L-00360 CCRCC Methylation_Array tumor CPT0002350008 202184990008_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 eb740923-3399-4976-b609-00265c751d18 64836f0fe0a72053ba17ac7e84a9f301 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor"} -C3L-00360.MethArray.Red.A C3L-00360 CCRCC Methylation_Array tissue_normal CPT0002370014 204930640108_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 1b600c9c-d890-491f-a3f7-b25088466a78 95b491999cbbc4ba4d4228e60ba27584 {"aliquot_tag": "ALQ_a59a1502", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.MethArray.Red.T C3L-00360 CCRCC Methylation_Array tumor CPT0002350008 202184990008_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6b316965-ed2e-4668-b789-553b96337cde b991c05e83edbd9f3c0e130b34a1dd86 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor"} -C3L-00360.miRNA-Seq.A.hg38 C3L-00360 CCRCC miRNA-Seq tissue_normal CPT0002370006 20e9c338-f48e-49c1-b25e-f7973f93b7ae_mirnaseq_gdc_realn.bam 229212354 BAM harmonized CPTAC3 ec619503-194f-43a2-a04a-f6eff9edc5e1 9d89a325b3965559acc930905fc98855 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.miRNA-Seq.S31_L004_R1.A C3L-00360 CCRCC miRNA-Seq tissue_normal CPT0002370006 181108_UNC31-K00269_0163_BH23TVBBXY_CACGAT_S31_L004_R1_001.unaln.bam 203742573 BAM S31_L004_R1 unaligned CPTAC3 1599f70a-8de2-4f3a-8dd5-906bfa49bbb4 5d425e49b94178155236908705eed651 {"aliquot_tag": "ALQ_528f456f", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.miRNA-Seq.S39_L002_R1.T C3L-00360 CCRCC miRNA-Seq tumor CPT0002350005 181012_UNC32-K00270_0124_AH223CBBXY_GTCCGC_S39_L002_R1_001.unaln.bam 248936204 BAM S39_L002_R1 unaligned CPTAC3 c48207f6-af02-443a-a0fa-0d27083440d0 3b6509b0cb1508abd72c782697f18d11 {"aliquot_tag": "ALQ_b14647b5", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00360.miRNA-Seq.T.hg38 C3L-00360 CCRCC miRNA-Seq tumor CPT0002350005 8cb2643c-ddee-478d-91cc-62e00ad4cfad_mirnaseq_gdc_realn.bam 276311003 BAM harmonized CPTAC3 76e65f35-c7fe-4b13-8458-910c428b7fc0 fb225c0db2f1522e2cc4b07d132e6802 {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor"} -C3L-00360.RNA-Seq.chimeric.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.chimeric.gdc_realn.bam 67214306 BAM chimeric harmonized CPTAC3 566dc661-0b18-4cac-abc7-97553b9edbe8 85c3f46f649931972d1e18bbc03ca2d9 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.RNA-Seq.chimeric.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.chimeric.gdc_realn.bam 108781022 BAM chimeric harmonized CPTAC3 6e14be8a-c0a6-475c-9920-63e63c221e8c 182014c2fed45a19b4a521c6796fa78e {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor"} -C3L-00360.RNA-Seq.genomic.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.genomic.gdc_realn.bam 6503036850 BAM genomic harmonized CPTAC3 82f30976-bcf5-4152-848f-6fa1a687873f 83eaff064e52da658ecede7ca76fed81 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.RNA-Seq.genomic.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.genomic.gdc_realn.bam 8256258590 BAM genomic harmonized CPTAC3 e4a85fd2-101f-43ca-a2d8-dc5e20dad70a 7e0296ebc3da5695c52a347e9f77b6a9 {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor"} -C3L-00360.RNA-Seq.S4_L001_R1.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4047258213 FASTQ S4_L001_R1 unaligned CPTAC3 612b312e-cad7-4343-a5de-70aa004a2f76 6f2a787d860058409cb0e7ef613f145a {"aliquot_tag": "ALQ_b14647b5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00360.RNA-Seq.S4_L001_R2.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4427141226 FASTQ S4_L001_R2 unaligned CPTAC3 a51b7537-6e96-4915-a318-2635338a0c86 775817174fe529fa7c17bb437491daf1 {"aliquot_tag": "ALQ_b14647b5", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00360.RNA-Seq.S50_L006_R1.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R1_001.fastq.gz 3411320093 FASTQ S50_L006_R1 unaligned CPTAC3 c828fde4-aec4-4a4c-8f3b-40850c03004e d236c97e9b2ef882ef81ad12ae94bd47 {"aliquot_tag": "ALQ_528f456f", "sample": "S50", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.RNA-Seq.S50_L006_R2.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R2_001.fastq.gz 3647868189 FASTQ S50_L006_R2 unaligned CPTAC3 b6786e42-a506-498d-9978-99028e70cf73 3b459cb22134a2ef1e5b1743be6b6ec1 {"aliquot_tag": "ALQ_528f456f", "sample": "S50", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.RNA-Seq.transcriptome.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.transcriptome.gdc_realn.bam 7964194482 BAM transcriptome harmonized CPTAC3 f5cf43a4-ae4a-4cd1-9d2f-7a42715095fe df966c7a565b89ed846cc62b123d3b95 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.RNA-Seq.transcriptome.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.transcriptome.gdc_realn.bam 10523403055 BAM transcriptome harmonized CPTAC3 df64cd3c-c39b-4b85-9b47-463b5b38555c b320006d620da8b11ca611b2c75ff5ee {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor"} -C3L-00360.WGS.A C3L-00360 CCRCC WGS tissue_normal CPT0002370009 CPT0002370009.WholeGenome.RP-1303.bam 54772091219 BAM aligned CPTAC3 205e6833-4e12-4b82-88ac-9dc08bbad304 d4a99bf0f238c043858c82cc060486b1 {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.WGS.A.hg38 C3L-00360 CCRCC WGS tissue_normal CPT0002370009 3f5476f7-fc0c-4455-a55d-6ffc6a4e02b5_wgs_gdc_realn.bam 79956048951 BAM harmonized CPTAC3 4f2101d9-2938-48b8-976b-51e1a353ee07 36f21b4079e895bc5146ef47e645c884 {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.WGS.N C3L-00360 CCRCC WGS blood_normal CPT0004380002 CPT0004380002.WholeGenome.RP-1303.bam 78414656248 BAM aligned CPTAC3 7e1a183a-f96f-4177-a3ae-52b12139bc9b 1f9f2b904c4b0c0bb0585bf94fbc4015 {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00360.WGS.N.hg38 C3L-00360 CCRCC WGS blood_normal CPT0004380002 d370264e-8815-4dee-994f-7613984b621a_gdc_realn.bam 117087952595 BAM harmonized CPTAC3 6d047204-7723-4ef2-9b91-f16ed91c0eca f979247d5fd7e7fd79aac5f328522244 {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00360.WGS.T C3L-00360 CCRCC WGS tumor CPT0002350008 CPT0002350008.WholeGenome.RP-1303.bam 59747272963 BAM aligned CPTAC3 468e1d5b-2bb2-4dc7-b0db-ce9f7a94973b a07f6a91143f090ab56bc7baea61a418 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor"} -C3L-00360.WGS.T.hg38 C3L-00360 CCRCC WGS tumor CPT0002350008 a7108f05-c999-4aee-99a4-0412405cba81_gdc_realn.bam 88573586352 BAM harmonized CPTAC3 c9871d5b-d000-4fad-a0cb-f3e9b5138a18 c8bc269fcdb2b83e5661e5cfe70ce674 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor"} -C3L-00360.WXS.A C3L-00360 CCRCC WXS tissue_normal CPT0002370009 CPT0002370009.WholeExome.RP-1303.bam 32512914204 BAM aligned CPTAC3 86d0d52c-b823-4308-93bf-8bf53b0e8179 28a0a6760d82a335df14781d67f340f7 {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.WXS.A.hg38 C3L-00360 CCRCC WXS tissue_normal CPT0002370009 3f5476f7-fc0c-4455-a55d-6ffc6a4e02b5_wxs_gdc_realn.bam 44521519512 BAM harmonized CPTAC3 5ecc82de-4ccb-4c37-a3f4-dd908d9353bd 6e8b8907d3cd158585f79deb10f9f5ae {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00360.WXS.N C3L-00360 CCRCC WXS blood_normal CPT0004380002 CPT0004380002.WholeExome.RP-1303.bam 36427633165 BAM aligned CPTAC3 bd88d750-afd9-4de2-9241-989d0bac76c9 1f3f504db3c30136f2b1477fdd9be0af {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00360.WXS.N.hg38 C3L-00360 CCRCC WXS blood_normal CPT0004380002 d370264e-8815-4dee-994f-7613984b621a_gdc_realn.bam 49558189942 BAM harmonized CPTAC3 b673a990-47db-4b4a-813a-575546df2de3 9dd4d81209dc9d83bcddc8a07c91e4d8 {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00360.WXS.T C3L-00360 CCRCC WXS tumor CPT0002350008 CPT0002350008.WholeExome.RP-1303.bam 26427184361 BAM aligned CPTAC3 618fa734-7747-4e58-854f-10f03f91ddb7 9ffab05e6a5171324eb9969f5176d761 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor"} -C3L-00360.WXS.T.hg38 C3L-00360 CCRCC WXS tumor CPT0002350008 a7108f05-c999-4aee-99a4-0412405cba81_gdc_realn.bam 36945178660 BAM harmonized CPTAC3 b96b1dd9-08c3-4efb-9f24-9e725a2a9bf4 dd4580b00cb8dd95c29da0e56bdde0e3 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor"} -C3L-00361.MethArray.Green.T C3L-00361 UCEC Methylation_Array tumor CPT0002430008 202178770111_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 50ed7b2d-110d-40d5-afbf-4d0f0b43dea0 857f238af5b82d5c71a52b6146c4fb2b {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor"} -C3L-00361.MethArray.Red.T C3L-00361 UCEC Methylation_Array tumor CPT0002430008 202178770111_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 5693fe81-ef12-4862-8045-3ec5a9fc5a0a 5d0d7b93d7ab288ebcbc3191f202f708 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor"} -C3L-00361.miRNA-Seq.A.hg38 C3L-00361 UCEC miRNA-Seq tissue_normal CPT0002450006 85d973dd-9126-4757-9da9-249a1672a302_mirnaseq_gdc_realn.bam 272509955 BAM harmonized CPTAC3 c0b05a45-0461-4470-8b4c-583bdf7790b4 21790b8e9658e2ccca1345da7f746f40 {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.miRNA-Seq.S38_L004_R1.T C3L-00361 UCEC miRNA-Seq tumor CPT0002430005 181113_UNC31-K00269_0164_AH23NNBBXY_AGTTCC_S38_L004_R1_001.unaln.bam 216368635 BAM S38_L004_R1 unaligned CPTAC3 149dafd1-2292-40a9-953a-a78daa4e8da2 3b1195603375418b3c4753f2cac717bb {"aliquot_tag": "ALQ_230382ad", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00361.miRNA-Seq.S3_L006_R1.A C3L-00361 UCEC miRNA-Seq tissue_normal CPT0002450006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L006_R1_001.unaln.bam 241020243 BAM S3_L006_R1 unaligned CPTAC3 cdf15b8d-33e8-4bb2-92b9-b8d7a46f0196 2070d932c4cd3ee9b6441925714ea033 {"aliquot_tag": "ALQ_354a26b7", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.miRNA-Seq.T.hg38 C3L-00361 UCEC miRNA-Seq tumor CPT0002430005 702cf184-69e8-49dd-a676-8928674e9e30_mirnaseq_gdc_realn.bam 241346400 BAM harmonized CPTAC3 4c39a2c1-330e-4f47-9147-9b8e48971ac0 3e726552f754405a72a5d4c103d59075 {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.chimeric.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.chimeric.gdc_realn.bam 83181310 BAM chimeric harmonized CPTAC3 7e21bfab-1f32-4b0c-86c3-9af2f9fea9a3 9dd36e3ee13b1beeec44be7ca845937d {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.RNA-Seq.chimeric.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.chimeric.gdc_realn.bam 72068577 BAM chimeric harmonized CPTAC3 64bde912-869f-465d-821c-cfe8a17cb9d0 ae6c0469bf828f4e4dcab0b6c192dd21 {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.chimeric.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.chimeric.gdc_realn.bam 150511531 BAM chimeric harmonized CPTAC3 c8b7bac9-d98b-473b-b300-69a3812cff50 01fca99505c2147d20d6565066cfccb3 {"aliquot_tag": "ALQ_aca6d21a", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.genomic.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.genomic.gdc_realn.bam 8318240035 BAM genomic harmonized CPTAC3 78585552-9475-4781-b81a-95c1af3ba105 2b85d4ee144f79a9cbebb8b34d5ef825 {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.RNA-Seq.genomic.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.genomic.gdc_realn.bam 8835704503 BAM genomic harmonized CPTAC3 19bff5fc-d2dd-405e-9c30-731608412cda 17cd2af7d782459757c71503c5ddf879 {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.genomic.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.genomic.gdc_realn.bam 7958982536 BAM genomic harmonized CPTAC3 5918f830-d949-411b-b0b4-419963827a45 45c69980e829863bede655610a69c9af {"aliquot_tag": "ALQ_aca6d21a", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.S12_L004_R1.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4230350271 FASTQ S12_L004_R1 unaligned CPTAC3 d1c64f6f-aa85-463a-8773-69513cad82a7 50e7dbeb7f8ca22ed5b486b70bbebada {"aliquot_tag": "ALQ_230382ad", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.S12_L004_R2.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4666475221 FASTQ S12_L004_R2 unaligned CPTAC3 c0cbd504-5d93-4f9d-bb5a-1cbe602f2a3d d0372523440b4b20434bab5697e1ada2 {"aliquot_tag": "ALQ_230382ad", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.S19_R1.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R1_001.fastq.gz 4966495044 FASTQ S19_R1 unaligned CPTAC3 cf665016-f9e0-4318-a158-97e8aeab1ff0 b8e4e9893d5ed174534bb70d6500ba6c {"aliquot_tag": "ALQ_aca6d21a", "sample": "S19", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.S19_R2.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R2_001.fastq.gz 5103386752 FASTQ S19_R2 unaligned CPTAC3 f70c4768-08e0-419f-a833-30374e1d6383 63c1034f1c028645d11ce50b8a5ba760 {"aliquot_tag": "ALQ_aca6d21a", "sample": "S19", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.S5_L002_R1.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R1_001.fastq.gz 3814374193 FASTQ S5_L002_R1 unaligned CPTAC3 2bb0bf8f-ed23-4cc6-aaa6-f36f1d0811ab eccbf7dbf3be976626a875da5632c951 {"aliquot_tag": "ALQ_354a26b7", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.RNA-Seq.S5_L002_R2.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R2_001.fastq.gz 4351412567 FASTQ S5_L002_R2 unaligned CPTAC3 6c30343e-37cb-40c2-898e-44c3125b5afd 1a1afe17633f93fb71d116972cf3db60 {"aliquot_tag": "ALQ_354a26b7", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.RNA-Seq.transcriptome.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.transcriptome.gdc_realn.bam 10337354686 BAM transcriptome harmonized CPTAC3 48050869-89a2-4715-bdda-78eb8e4d564f 5f62bc3fce229ff416e1c74bcc543429 {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.RNA-Seq.transcriptome.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.transcriptome.gdc_realn.bam 9857137428 BAM transcriptome harmonized CPTAC3 fcfa21a6-2bac-4e5e-9522-b1036c472920 3330c854c76d966b3b0cc949d51020df {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor"} -C3L-00361.RNA-Seq.transcriptome.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.transcriptome.gdc_realn.bam 4028673360 BAM transcriptome harmonized CPTAC3 7cc8c798-d143-4c5f-a020-9b0b53db2187 7752dd842c2e9352057f51370939de48 {"aliquot_tag": "ALQ_aca6d21a", "gdc_sample_type": "Primary Tumor"} -C3L-00361.WGS.A C3L-00361 UCEC WGS tissue_normal CPT0002450009 CPT0002450009.WholeGenome.RP-1303.bam 62097807058 BAM aligned CPTAC3 b8f00e54-fe4d-4eaf-bef3-26929ab348b3 44139d09951ae5d8d32fe7cd0df21786 {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.WGS.A.hg38 C3L-00361 UCEC WGS tissue_normal CPT0002450009 c2d3b52e-1e55-4d90-9dba-1b608de38b9b_wgs_gdc_realn.bam 92790473045 BAM harmonized CPTAC3 627dd9e0-a5a8-4744-a3e8-fcc6958021d7 d624f13a6979f94032c9259008b422b3 {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.WGS.N C3L-00361 UCEC WGS blood_normal CPT0004400002 CPT0004400002.WholeGenome.RP-1303.bam 62927689569 BAM aligned CPTAC3 32e51e53-9a3f-4f71-8517-2313f006ffc8 9991c982dcea99a3089c9c445a16db99 {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00361.WGS.N.hg38 C3L-00361 UCEC WGS blood_normal CPT0004400002 7df399c7-9281-4eb1-8e1b-9d88c80e5881_gdc_realn.bam 91896924902 BAM harmonized CPTAC3 294e6bb9-3965-42e0-8a2b-d954c16990f0 c3b578fdc1f344bcb9fef812a75b78dc {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00361.WGS.T C3L-00361 UCEC WGS tumor CPT0002430008 CPT0002430008.WholeGenome.RP-1303.bam 59369115660 BAM aligned CPTAC3 c3255cef-dfb8-43b7-89a4-741be1ec457b 78029aa68780d32f699cc1d25661662b {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor"} -C3L-00361.WGS.T.hg38 C3L-00361 UCEC WGS tumor CPT0002430008 8c244af7-4d0a-447d-8da2-af9d147718aa_gdc_realn.bam 87114823810 BAM harmonized CPTAC3 47f3fed4-4116-4843-9843-0ab433dad9a4 284a7ee8f7ba724a0c9cf205807ae708 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor"} -C3L-00361.WXS.A C3L-00361 UCEC WXS tissue_normal CPT0002450009 CPT0002450009.WholeExome.RP-1303.bam 30586780355 BAM aligned CPTAC3 7081dcb6-fb9d-4205-93fd-974c60de9de8 7283e6a039a4f47846dc20866a463438 {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.WXS.A.hg38 C3L-00361 UCEC WXS tissue_normal CPT0002450009 c2d3b52e-1e55-4d90-9dba-1b608de38b9b_wxs_gdc_realn.bam 41100600616 BAM harmonized CPTAC3 ca79e6ba-8198-4193-9670-6fa669fe2751 eb9a49cdef33dc196b3444e8385d7b5e {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00361.WXS.N C3L-00361 UCEC WXS blood_normal CPT0004400002 CPT0004400002.WholeExome.RP-1303.bam 27744748115 BAM aligned CPTAC3 78abd9b6-8c68-4ddc-8216-1725bb3928a6 22ea1ae619617181d880cf9f2d07d0fd {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00361.WXS.N.hg38 C3L-00361 UCEC WXS blood_normal CPT0004400002 7df399c7-9281-4eb1-8e1b-9d88c80e5881_gdc_realn.bam 38157277616 BAM harmonized CPTAC3 9c34aa06-3655-49af-86ea-83132b1eb953 36624d0d0bc6328241b6e78e8705e316 {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00361.WXS.T C3L-00361 UCEC WXS tumor CPT0002430008 CPT0002430008.WholeExome.RP-1303.bam 26772221243 BAM aligned CPTAC3 ada10dfa-45ec-42c5-94ef-f38364736db2 1e230f12e975aec26225d2b90d694cf5 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor"} -C3L-00361.WXS.T.hg38 C3L-00361 UCEC WXS tumor CPT0002430008 8c244af7-4d0a-447d-8da2-af9d147718aa_gdc_realn.bam 36892920165 BAM harmonized CPTAC3 15474b0b-f26e-4516-80ec-aca7986d8282 6f59c1ec246dbd1efba12188196e39a1 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor"} -C3L-00362.MethArray.Green.T C3L-00362 UCEC Methylation_Array tumor CPT0002500008 202184900105_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 721df2ff-3aa9-43e5-81ac-239df5f5034e b99be21e082907ec59f610c30df8cd64 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor"} -C3L-00362.MethArray.Red.T C3L-00362 UCEC Methylation_Array tumor CPT0002500008 202184900105_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 3410f9e9-fad9-4a67-8bdc-91a44497aa09 0143a66f9d6d3815a15840d531cad5a8 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor"} -C3L-00362.miRNA-Seq.S40_L002_R1.T C3L-00362 UCEC miRNA-Seq tumor CPT0002500005 181012_UNC32-K00270_0124_AH223CBBXY_GTGGCC_S40_L002_R1_001.unaln.bam 174299045 BAM S40_L002_R1 unaligned CPTAC3 ef5fddd1-3051-4ff8-94d0-2e6eca045fba c503beebe8980ab9fd3049e4ea66eb41 {"aliquot_tag": "ALQ_afff2bd8", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00362.miRNA-Seq.T.hg38 C3L-00362 UCEC miRNA-Seq tumor CPT0002500005 95c249fb-5a5b-4d79-93a6-f06938b7d0c0_mirnaseq_gdc_realn.bam 187844656 BAM harmonized CPTAC3 44575c0d-66ab-47d3-bbde-63dcfebea759 c73fddc48729fdf140283ad480853b42 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.chimeric.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.chimeric.gdc_realn.bam 115514849 BAM chimeric harmonized CPTAC3 aa95fa92-06a2-4ac9-b3bf-82bf17e0aa3a 265b9330d3b33d661d095ef0538c1639 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.chimeric.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.chimeric.gdc_realn.bam 184232820 BAM chimeric harmonized CPTAC3 4cbccd6c-4072-4f0d-8ea5-a4363c6bab6f 71ab8e3d033744da522c6573f1fa2a44 {"aliquot_tag": "ALQ_64465d6a", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.genomic.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.genomic.gdc_realn.bam 7441586660 BAM genomic harmonized CPTAC3 c9b3ea0a-21c2-415b-b0c6-4e2776c22184 565a3f70b242de7a00bb6e4556d5c110 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.genomic.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.genomic.gdc_realn.bam 10452182682 BAM genomic harmonized CPTAC3 3b1fed78-3e04-4a94-9510-0e223fece498 34aa58ce199855ce29e24a9ed9706e62 {"aliquot_tag": "ALQ_64465d6a", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.S62_R1.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R1_001.fastq.gz 6810927312 FASTQ S62_R1 unaligned CPTAC3 437dd343-d1c5-4221-93d4-a6267458b716 b2189a4f48b2ca509fde512d0981eb21 {"aliquot_tag": "ALQ_64465d6a", "sample": "S62", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.S62_R2.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R2_001.fastq.gz 7074047662 FASTQ S62_R2 unaligned CPTAC3 87ec48f8-0fb1-47c9-a167-e4559e4b3203 1f7544aa1343eb90d5be7490f108a8ad {"aliquot_tag": "ALQ_64465d6a", "sample": "S62", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.S6_L004_R1.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R1_001.fastq.gz 3723944064 FASTQ S6_L004_R1 unaligned CPTAC3 638dd879-a5ee-437c-9f30-c97dcfa19a09 713eaba1f82c2f8be83e77110ac94e69 {"aliquot_tag": "ALQ_afff2bd8", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.S6_L004_R2.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R2_001.fastq.gz 4179158272 FASTQ S6_L004_R2 unaligned CPTAC3 a02f460b-1cbd-4c92-a5ef-9928088c8c1e 5c299c57ea2cf59ecc87209391d5608c {"aliquot_tag": "ALQ_afff2bd8", "sample": "S6", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.transcriptome.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.transcriptome.gdc_realn.bam 8468250505 BAM transcriptome harmonized CPTAC3 5e7cef2b-4931-4255-a748-4e3f4c9e9c82 868059ae6c8ad98de4af392481e5dc03 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor"} -C3L-00362.RNA-Seq.transcriptome.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.transcriptome.gdc_realn.bam 5939483357 BAM transcriptome harmonized CPTAC3 6456abc0-9881-44fe-9112-497d2e1e5e7f 86a117791657af9c1ba91627af1d561a {"aliquot_tag": "ALQ_64465d6a", "gdc_sample_type": "Primary Tumor"} -C3L-00362.WGS.N C3L-00362 UCEC WGS blood_normal CPT0002850002 CPT0002850002.WholeGenome.RP-1303.bam 63124633407 BAM aligned CPTAC3 0e98f024-52ac-4b53-9d4d-24d10982e0cc 4f66b04676a626c00576bdc3489db389 {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00362.WGS.N.hg38 C3L-00362 UCEC WGS blood_normal CPT0002850002 fabf7d4a-34b3-4c27-8921-035cace2795b_gdc_realn.bam 91996324718 BAM harmonized CPTAC3 40d09165-a271-453d-9bd0-1f6056b7b83d 6055763a132ca42fe3b194bdd3729e9e {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00362.WGS.T C3L-00362 UCEC WGS tumor CPT0002500008 CPT0002500008.WholeGenome.RP-1303.bam 71327810996 BAM aligned CPTAC3 1d04a0bc-d3f9-4b46-9328-7d8ca2e18176 f338de6c989d1cafd4fa0c7207a8dae3 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor"} -C3L-00362.WGS.T.hg38 C3L-00362 UCEC WGS tumor CPT0002500008 cc81280d-f906-4e45-a988-000aeb16fcdf_gdc_realn.bam 104618646070 BAM harmonized CPTAC3 3af7e6a3-594d-4830-a5ea-cef88e23f906 6e2d3322b28d5e2b48728cd5570fe317 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor"} -C3L-00362.WXS.N C3L-00362 UCEC WXS blood_normal CPT0002850002 CPT0002850002.WholeExome.RP-1303.bam 41276770981 BAM aligned CPTAC3 cab67bf8-4e1d-4b29-a729-5de136ec0ae3 e6409bd6bc2ce03988937890491cd5fb {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00362.WXS.N.hg38 C3L-00362 UCEC WXS blood_normal CPT0002850002 fabf7d4a-34b3-4c27-8921-035cace2795b_gdc_realn.bam 56310775407 BAM harmonized CPTAC3 20d5f472-7ada-4026-ad90-c4aee6490d47 4e89c45a10989e95a6eb90c6e372d14b {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00362.WXS.T C3L-00362 UCEC WXS tumor CPT0002500008 CPT0002500008.WholeExome.RP-1303.bam 33589971678 BAM aligned CPTAC3 da57cb9d-9259-4263-85d9-c3289cd1e2d6 bc9be4d459450f4932a90e4a03d99b50 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor"} -C3L-00362.WXS.T.hg38 C3L-00362 UCEC WXS tumor CPT0002500008 cc81280d-f906-4e45-a988-000aeb16fcdf_gdc_realn.bam 46023406543 BAM harmonized CPTAC3 e297322a-2b1a-4610-a5d7-bb31fffd07bc 7836abe46932cf5b89f0cf010abad428 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor"} -C3L-00365.MethArray.Green.T C3L-00365 GBM Methylation_Array tumor CPT0002410008 202184990057_R06C01_Grn.idat 13676218 IDAT Green NA CPTAC3 cadf61f2-6afa-4c79-8e4c-5fc3e279e944 2e2d693b0ea7291e74f1c7179d794911 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor"} -C3L-00365.MethArray.Red.T C3L-00365 GBM Methylation_Array tumor CPT0002410008 202184990057_R06C01_Red.idat 13676218 IDAT Red NA CPTAC3 784c1981-e44d-456c-81c3-fb12c3f39e33 2c718865e37184762184374fb9175f5f {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor"} -C3L-00365.miRNA-Seq.S2_L003_R1.T C3L-00365 GBM miRNA-Seq tumor CPT0002410013 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L003_R1_001.unaln.bam 323705739 BAM S2_L003_R1 unaligned CPTAC3 a2b8dfda-39b4-442f-830a-424f7b5deac9 ce1ffd3167006d515cb3850f5d980f4a {"aliquot_tag": "ALQ_a9bb45b9", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00365.miRNA-Seq.T.hg38 C3L-00365 GBM miRNA-Seq tumor CPT0002410013 12930ba9-7a07-49a0-b399-419c7f2e972f_mirnaseq_gdc_realn.bam 364603447 BAM harmonized CPTAC3 9fc84e89-b538-4439-ba11-e9e81d9f78dc 6e822ae662e19f6a01e951a88266922d {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor"} -C3L-00365.RNA-Seq.chimeric.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.chimeric.gdc_realn.bam 134764796 BAM chimeric harmonized CPTAC3 f5d7855a-dc89-4580-913f-8b081ba5619f aa61fa388d39a9b0ff84d4efaac5ba33 {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor"} -C3L-00365.RNA-Seq.genomic.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.genomic.gdc_realn.bam 9238517517 BAM genomic harmonized CPTAC3 0630b56c-7dc4-453a-ac77-6b7871bf6fc0 ec1529ec7003043a828289da95b6faf3 {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor"} -C3L-00365.RNA-Seq.S9_L006_R1.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R1_001.fastq.gz 4305229627 FASTQ S9_L006_R1 unaligned CPTAC3 c44ed7f2-1622-46de-804c-9611500c3fc0 058c5ec317bc0f07be1ed923b76bab1f {"aliquot_tag": "ALQ_a9bb45b9", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00365.RNA-Seq.S9_L006_R2.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R2_001.fastq.gz 4633365552 FASTQ S9_L006_R2 unaligned CPTAC3 1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce e856937adfb077b937ca1e202a6dddd8 {"aliquot_tag": "ALQ_a9bb45b9", "sample": "S9", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00365.RNA-Seq.transcriptome.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.transcriptome.gdc_realn.bam 10531131546 BAM transcriptome harmonized CPTAC3 3f7a96f5-7cf3-4865-9d77-596dc181c697 19842b89cfa9da71effdc7e2fd947b02 {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor"} -C3L-00365.WGS.N C3L-00365 GBM WGS blood_normal CPT0004390002 CPT0004390002.WholeGenome.RP-1303.bam 84728590605 BAM aligned CPTAC3 68cf4fa0-f1a1-4a08-aeb8-793af612f3aa 08ff7689a75e149393259ff5bab7f816 {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00365.WGS.N.hg38 C3L-00365 GBM WGS blood_normal CPT0004390002 1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 125945749891 BAM harmonized CPTAC3 4d6b2cf2-0e59-4d7e-8189-7ce030358a1e eb54f7be7de7ec32c383815dc26e68f0 {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00365.WGS.T C3L-00365 GBM WGS tumor CPT0002410008 CPT0002410008.WholeGenome.RP-1303.bam 83399791975 BAM aligned CPTAC3 a6fd34ee-2604-4612-bcc9-eef132918cee e2cc0cb00083ed1ca79f89f924a800e1 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor"} -C3L-00365.WGS.T.hg38 C3L-00365 GBM WGS tumor CPT0002410008 fded09b0-7908-4f9f-9f43-b3e8833bf39e_gdc_realn.bam 120800504632 BAM harmonized CPTAC3 0976b529-4cf1-4ce0-9777-5700dc51cede 1f5531986769a0657e884abfb1018431 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor"} -C3L-00365.WXS.N C3L-00365 GBM WXS blood_normal CPT0004390002 CPT0004390002.WholeExome.RP-1303.bam 28839874946 BAM aligned CPTAC3 b5a53750-bc0a-488f-89f0-97aadc8fffc5 b19a7134e4dd6f1b14510a2c0ae458f8 {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00365.WXS.N.hg38 C3L-00365 GBM WXS blood_normal CPT0004390002 1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 40164206329 BAM harmonized CPTAC3 4439be55-0fe8-4392-b430-fa195ca046a8 7c3a6f0e6dcd63cb301598825b477c1b {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00365.WXS.T C3L-00365 GBM WXS tumor CPT0002410008 CPT0002410008.WholeExome.RP-1303.bam 24302982536 BAM aligned CPTAC3 6e2d402d-0216-4fe7-b758-a364bfc09808 e31a9d6357e49ffb4205257f31b4498c {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor"} -C3L-00365.WXS.T.hg38 C3L-00365 GBM WXS tumor CPT0002410008 fded09b0-7908-4f9f-9f43-b3e8833bf39e_gdc_realn.bam 33672976359 BAM harmonized CPTAC3 b86f23ec-d40a-46e3-af36-f0529449ea22 52fb45fe60b3f2a2b7cf4840444c77a5 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor"} -C3L-00368.MethArray.Green.A C3L-00368 LUAD Methylation_Array tissue_normal CPT0063750009 203027390081_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f985071e-c654-4846-bfe3-c84176446eb8 1204da90b010fa91d3e2d49ecd93335b {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.MethArray.Green.T C3L-00368 LUAD Methylation_Array tumor CPT0063730006 202178770045_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 1ce25fe7-0600-46ce-bff8-8355b11394f1 097ddd6da51eb5c630133ceba351fcd3 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor"} -C3L-00368.MethArray.Red.A C3L-00368 LUAD Methylation_Array tissue_normal CPT0063750009 203027390081_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 9adbedec-6de7-4b24-9b46-14fe22689d76 e7185bb0f85c38a294bf2758b44e202c {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.MethArray.Red.T C3L-00368 LUAD Methylation_Array tumor CPT0063730006 202178770045_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 741c4a4a-3377-4e71-a802-c230202b0e4b 17b6b3768b55a8cc131c42655382043e {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor"} -C3L-00368.miRNA-Seq.A.hg38 C3L-00368 LUAD miRNA-Seq tissue_normal CPT0063750006 8a26268d-4fc1-4f53-84fc-99efdc9dbffb_mirnaseq_gdc_realn.bam 201200028 BAM harmonized CPTAC3 8a7f8894-1f8c-43a4-bfb0-3edafb67119d 2d800976dc8640bc1396ffa799348929 {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.miRNA-Seq.S10_L003_R1.T C3L-00368 LUAD miRNA-Seq tumor CPT0063730009 180924_UNC31-K00269_0154_AHWTMLBBXX_GTTTCG_S10_L003_R1_001.unaln.bam 184782157 BAM S10_L003_R1 unaligned CPTAC3 3d8ac9e6-3fec-4940-840d-8637bf570790 e5b103c579acc41de4a400d6ababc661 {"aliquot_tag": "ALQ_cc39be1b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00368.miRNA-Seq.S34_L002_R1.A C3L-00368 LUAD miRNA-Seq tissue_normal CPT0063750006 181108_UNC31-K00269_0163_BH23TVBBXY_CATGGC_S34_L002_R1_001.unaln.bam 175238655 BAM S34_L002_R1 unaligned CPTAC3 2920d38e-e089-4e97-803e-f2a634f9127d 423c902b6a04a7cf1795b3dbdc3e416c {"aliquot_tag": "ALQ_d3c6562a", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.miRNA-Seq.T.hg38 C3L-00368 LUAD miRNA-Seq tumor CPT0063730009 02170c19-619f-4aa1-aa80-dbd0ec624295_mirnaseq_gdc_realn.bam 204052767 BAM harmonized CPTAC3 011aa56d-9e75-4f69-bd7a-e8b9734c4f17 6913d5de56e013820257e765c1b3491c {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor"} -C3L-00368.RNA-Seq.chimeric.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.chimeric.gdc_realn.bam 47693097 BAM chimeric harmonized CPTAC3 db20d986-c5b2-4574-8930-f11c40de6ea6 d6e213a37d427f990502436f133f5293 {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.RNA-Seq.chimeric.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.chimeric.gdc_realn.bam 29752863 BAM chimeric harmonized CPTAC3 81247107-fe31-41c3-a037-f1fa313a01ad be16f674cfc670810fc09a3f59415937 {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor"} -C3L-00368.RNA-Seq.genomic.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.genomic.gdc_realn.bam 5491966389 BAM genomic harmonized CPTAC3 d938d19c-4d5c-4387-9400-591569fcec9a 861911a8fdcd2006a3c352b1207a8417 {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.RNA-Seq.genomic.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.genomic.gdc_realn.bam 8878353190 BAM genomic harmonized CPTAC3 9f2aed97-36c5-4c3e-a87c-da4908409163 c94521b636766655f9657ceb1392516a {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor"} -C3L-00368.RNA-Seq.S1_L007_R1.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R1_001.fastq.gz 2812587486 FASTQ S1_L007_R1 unaligned CPTAC3 bc417a64-b28b-4b98-bceb-72290423edab 426ca13ff6c5d52900ecd4b1b2e34f45 {"aliquot_tag": "ALQ_d3c6562a", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.RNA-Seq.S1_L007_R2.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R2_001.fastq.gz 2954299519 FASTQ S1_L007_R2 unaligned CPTAC3 d2677613-eac0-454b-bae2-d617f4d4499d b5570f80060e787e5bd976119c3dc60c {"aliquot_tag": "ALQ_d3c6562a", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.RNA-Seq.S8_L008_R1.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4191973381 FASTQ S8_L008_R1 unaligned CPTAC3 bb8ea747-c1e3-4688-951e-2003f19d54ed ff0ba3fa3ac7e8f7d4d74043988036a3 {"aliquot_tag": "ALQ_cc39be1b", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00368.RNA-Seq.S8_L008_R2.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 4616759031 FASTQ S8_L008_R2 unaligned CPTAC3 92f50d80-ee03-419b-bb18-47cb4c997113 de1192c95f1df4f098bfc5091a941e87 {"aliquot_tag": "ALQ_cc39be1b", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00368.RNA-Seq.transcriptome.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.transcriptome.gdc_realn.bam 6886798926 BAM transcriptome harmonized CPTAC3 d7ba9fa7-edf4-4765-ab93-04cb16d38a92 74fe8cb98630e929e78494df1a1777db {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.RNA-Seq.transcriptome.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.transcriptome.gdc_realn.bam 11669083365 BAM transcriptome harmonized CPTAC3 c38af7d9-f51e-4248-81d7-b54e1d6c73e9 ab865476fa3d567bbcd9f13164c0675f {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor"} -C3L-00368.WGS.A C3L-00368 LUAD WGS tissue_normal CPT0063750009 CPT0063750009.WholeGenome.RP-1303.bam 58946484941 BAM aligned CPTAC3 33927298-2a7f-48cb-a9e9-221a3ae7a983 45ba3cb2c5a9a6513791ba739cc37920 {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.WGS.A.hg38 C3L-00368 LUAD WGS tissue_normal CPT0063750009 eb9967de-974e-4c8b-b16c-4da0dd47f3ed_wgs_gdc_realn.bam 85674261409 BAM harmonized CPTAC3 434dac67-26a6-440c-83ac-a6a706b6c51f 1ae7d3d2d8a2fb2184ec29adc576c1db {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.WGS.N C3L-00368 LUAD WGS blood_normal CPT0065310002 CPT0065310002.WholeGenome.RP-1303.bam 66100290444 BAM aligned CPTAC3 be3b4e8c-8507-4c15-9e67-2bc6ca0ed2d1 7d5b17e0ce0f377fb72b4fd25ac0d273 {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal"} -C3L-00368.WGS.N.hg38 C3L-00368 LUAD WGS blood_normal CPT0065310002 d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 99365652695 BAM harmonized CPTAC3 d730cefc-a602-472e-8450-43a4ee8923b3 7cda3b16bb7e94c34c19ed1b681805dd {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal"} -C3L-00368.WGS.T C3L-00368 LUAD WGS tumor CPT0063730006 CPT0063730006.WholeGenome.RP-1303.bam 80464127238 BAM aligned CPTAC3 9dcd879a-8005-4da7-8e2b-ee978d0998aa a047186c4bcdb6acdb2a633042d2e7e8 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor"} -C3L-00368.WGS.T.hg38 C3L-00368 LUAD WGS tumor CPT0063730006 72483032-4ef4-40ef-b2f9-64a56252e57d_gdc_realn.bam 124826566318 BAM harmonized CPTAC3 52e3f28d-d03b-4a11-bc14-c9b906921610 0e66f822f1975ba89f284125f4b44400 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor"} -C3L-00368.WXS.A C3L-00368 LUAD WXS tissue_normal CPT0063750009 CPT0063750009.WholeExome.RP-1303.bam 34789610287 BAM aligned CPTAC3 bb6d58b3-a38c-4799-b2d5-5641b65616d4 6f806c4c146f41eff15e64c9aaf86679 {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.WXS.A.hg38 C3L-00368 LUAD WXS tissue_normal CPT0063750009 eb9967de-974e-4c8b-b16c-4da0dd47f3ed_wxs_gdc_realn.bam 46333355955 BAM harmonized CPTAC3 e754a0d2-732e-4e28-88f8-6028d778f89c 0b047ea689bde123f431787132f65e2d {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00368.WXS.N C3L-00368 LUAD WXS blood_normal CPT0065310002 CPT0065310002.WholeExome.RP-1303.bam 32993909222 BAM aligned CPTAC3 077d0759-ec93-45bb-aa1b-c1ea9df98089 0fcdafeec8172f9df1e5dc2f703130d8 {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal"} -C3L-00368.WXS.N.hg38 C3L-00368 LUAD WXS blood_normal CPT0065310002 d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 44407190653 BAM harmonized CPTAC3 cb0fb2a7-2c6b-4855-9a62-9350f0683bb8 7fc5b7ff275304bd11e00ef52290ab37 {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal"} -C3L-00368.WXS.T C3L-00368 LUAD WXS tumor CPT0063730006 CPT0063730006.WholeExome.RP-1303.bam 36689010964 BAM aligned CPTAC3 b9953f79-b2ba-42d1-84f6-8265ad6b0428 03ee50fd740341d2d0332a4c43f70ab5 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor"} -C3L-00368.WXS.T.hg38 C3L-00368 LUAD WXS tumor CPT0063730006 72483032-4ef4-40ef-b2f9-64a56252e57d_gdc_realn.bam 51264266651 BAM harmonized CPTAC3 85024923-5694-4461-81a3-100f9a44db27 7a88c058d9a5e90f4a2f541c8392e531 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_28c61080.MethArray.Green.T C3L-00369 CCRCC Methylation_Array tumor CPT0006520009 204372030079_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f7e8073f-4936-42ef-9785-a3c69db7967b 72cffd398664a3e8a93c5c5493ed5bf2 {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_28c61080.MethArray.Red.T C3L-00369 CCRCC Methylation_Array tumor CPT0006520009 204372030079_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 fa97092d-7795-495a-b922-277f11222f01 a6ac2749c26c8275894b794dc482e617 {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_28c61080.WGS.T C3L-00369 CCRCC WGS tumor CPT0006520009 CPT0006520009.WholeGenome.RP-2158.bam 23335263242 BAM aligned CPTAC3 e4acd0e3-39ab-4d6e-8766-0d49e3c60060 dbcc69a264d008b7b4cfd8993bb423da {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_28c61080.WGS.T.hg38 C3L-00369 CCRCC WGS tumor CPT0006520009 5b2ddfa2-94c5-4401-82cc-0234f40efbd8_wgs_gdc_realn.bam 67911133198 BAM harmonized CPTAC3 998a6f8e-9e7d-4ae6-827a-f03c0e2b22ac 44f2f7a9b4c76ab56fbee8653f2f1fac {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_28c61080.WXS.T C3L-00369 CCRCC WXS tumor CPT0006520009 CPT0006520009.WholeExome.RP-1303.bam 26125950770 BAM aligned CPTAC3 50d2be36-0819-4205-90a0-c979ece6edc7 a2ade09a0cff9d5a1cf67d1b59b6b9d3 {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_28c61080.WXS.T.hg38 C3L-00369 CCRCC WXS tumor CPT0006520009 5b2ddfa2-94c5-4401-82cc-0234f40efbd8_wxs_gdc_realn.bam 37163130194 BAM harmonized CPTAC3 5f972828-11c0-481f-9bfa-eba23fd59e81 f3837f40b50bfa47f53c6845871f796f {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_5c7d7cc3.miRNA-Seq.S30_L002_R1.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006470008 200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L002_R1_001.unaln.bam 362120248 BAM S30_L002_R1 unaligned CPTAC3 cb5085da-d0c5-479f-9a08-7ce9b20811de 067afb3ad069178de41242ef2b293982 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_5c7d7cc3.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006470008 6006cd1b-a544-401d-9e26-53e8883cfd57_mirnaseq_gdc_realn.bam 407563343 BAM harmonized CPTAC3 3f146d2a-25b7-4096-bf90-b4b83a7a6616 8519fab28046a2e977eec769948bd36b {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_5c7d7cc3.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.chimeric.gdc_realn.bam 82082378 BAM chimeric harmonized CPTAC3 4a0c09ed-4921-44f2-82fc-df17cac0a312 548ba24d457dd7281510a5cec7d022f9 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_5c7d7cc3.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.genomic.gdc_realn.bam 8759173161 BAM genomic harmonized CPTAC3 58bbb2e0-ebe8-4cf4-9c1e-f27e6c79777a 5b7915a106578c35ca6c75da71414dbb {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_5c7d7cc3.RNA-Seq.S17_L005_R1.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4333385636 FASTQ S17_L005_R1 unaligned CPTAC3 0d8beac8-1680-43c5-aa5d-5420c89ba6ac 63228665471662aabac114c10e187bb9 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_5c7d7cc3.RNA-Seq.S17_L005_R2.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 4951122606 FASTQ S17_L005_R2 unaligned CPTAC3 ca658797-2345-433f-8617-c14524027bba 14ed1ae3c587f6f678e0df6b1756e597 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_5c7d7cc3.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.transcriptome.gdc_realn.bam 11372129895 BAM transcriptome harmonized CPTAC3 006d661e-098c-4fa6-93c0-3cfb012a570c b48a6d002df7d2416e6a3da117364976 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_b8790d11.miRNA-Seq.S2_L002_R1.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006520006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L002_R1_001.unaln.bam 315804563 BAM S2_L002_R1 unaligned CPTAC3 7cc1d94f-2d93-4563-bf32-6b36af1fa5dc b9bd45a0c03d682de9193636c4683152 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_b8790d11.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006520006 525f293d-47c9-4af3-b005-4da102c6d2dc_mirnaseq_gdc_realn.bam 354053785 BAM harmonized CPTAC3 b2398259-0678-4d41-a029-b7bb3bfa56f2 5fc2628ac0f318c04a7959121639aaa0 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_b8790d11.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.chimeric.gdc_realn.bam 73296706 BAM chimeric harmonized CPTAC3 406b33b7-b759-4693-bc13-c2a6d593d9c9 6b4000583afb12ee6978a3d5d7ff871c {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_b8790d11.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.genomic.gdc_realn.bam 9478777306 BAM genomic harmonized CPTAC3 eb2eeff1-7c1d-4cb6-a568-f8db07cc90a4 8d0ae70245f33fc80498986e4458432b {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_b8790d11.RNA-Seq.S21_L006_R1.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R1_001.fastq.gz 4559357071 FASTQ S21_L006_R1 unaligned CPTAC3 0d4df7a3-0bc0-433a-b512-9693dcca677d e9471aa89498944c7ad52662062a54fb {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_b8790d11.RNA-Seq.S21_L006_R2.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R2_001.fastq.gz 5300994968 FASTQ S21_L006_R2 unaligned CPTAC3 27a5d8ca-2413-4978-ac91-a446d558c6a5 2e154f68371eba5f05feca9bf23d21e0 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_b8790d11.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.transcriptome.gdc_realn.bam 14282881347 BAM transcriptome harmonized CPTAC3 d1cba7e0-cf47-4a55-a78b-0c556bdb6ea0 1d81d6f276ea7265a8a0b19be8b60a26 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_bbc551c4.MethArray.Green.T C3L-00369 CCRCC Methylation_Array tumor CPT0006470006 204372030161_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 27e06e8e-4c71-4681-a329-88e8305d4c94 a90e8c1535b85e232ee2ac5cb8c1aa2e {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_bbc551c4.MethArray.Red.T C3L-00369 CCRCC Methylation_Array tumor CPT0006470006 204372030161_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 2e740af2-85d3-4aa1-9c41-64c3b4b8a057 0e2e40ce76968db8bc38ac7424d4141c {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_bbc551c4.WGS.T C3L-00369 CCRCC WGS tumor CPT0006470006 CPT0006470006.WholeGenome.RP-2158.bam 37269621161 BAM aligned CPTAC3 c9f064f3-af1d-47bc-aff6-e1a514e8cbb1 4127d6efe1865415c307826c32332952 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_bbc551c4.WGS.T.hg38 C3L-00369 CCRCC WGS tumor CPT0006470006 1f6d1b3a-55c4-4ddc-87f7-50506630f70b_wgs_gdc_realn.bam 108971086455 BAM harmonized CPTAC3 c9458f24-d83e-4a0d-8d3e-c264ea17f2fc 799a8c1a7972803d0337d6dcb5caf9b3 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_bbc551c4.WXS.T C3L-00369 CCRCC WXS tumor CPT0006470006 CPT0006470006.WholeExome.RP-1303.bam 21679163956 BAM aligned CPTAC3 2032f147-14db-4e67-9d69-6238e4372c99 fb61b9b6f13137b5fda87f72c1406eb9 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.DUP_bbc551c4.WXS.T.hg38 C3L-00369 CCRCC WXS tumor CPT0006470006 1f6d1b3a-55c4-4ddc-87f7-50506630f70b_wxs_gdc_realn.bam 31152139432 BAM harmonized CPTAC3 7e072ad2-a712-43f6-a8c5-719bb7b211f6 7f1b23621108fe6d76867354e0c29130 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00369.MethArray.Green.A C3L-00369 CCRCC Methylation_Array tissue_normal CPT0006530014 204930640061_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 22160a33-99e2-4fb6-88b4-a9a84007e8a6 9eb0a556d1f8d1838f1c8a92b3545f61 {"aliquot_tag": "ALQ_720c74cc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.MethArray.Green.T C3L-00369 CCRCC Methylation_Array tumor CPT0006440009 202178770083_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 855b3fba-4d12-4402-bf16-7505e37991b2 b1283c4b83e0325ff4d733e2b01a2d01 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor"} -C3L-00369.MethArray.Red.A C3L-00369 CCRCC Methylation_Array tissue_normal CPT0006530014 204930640061_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 6b7c30c6-45a0-4d06-99d5-d031cc7f86e1 dba5fb482285c71153e0b75da1689508 {"aliquot_tag": "ALQ_720c74cc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.MethArray.Red.T C3L-00369 CCRCC Methylation_Array tumor CPT0006440009 202178770083_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 633f73b1-ac4d-4bc8-9e18-3caa9fa66816 05c80ddcc3ba288a273fdb73a7b00b8d {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor"} -C3L-00369.miRNA-Seq.A.hg38 C3L-00369 CCRCC miRNA-Seq tissue_normal CPT0006530006 0abf7c29-9417-4a74-8daa-c5f7fed1af2b_mirnaseq_gdc_realn.bam 251273350 BAM harmonized CPTAC3 453ffcf9-df43-45c8-a126-a5ae7cb25bb7 3912b0f3ced7b39c685674af63c9ec2c {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.miRNA-Seq.S12_L005_R1.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006440006 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L005_R1_001.unaln.bam 251099581 BAM S12_L005_R1 unaligned CPTAC3 c722db17-8629-4a0c-a3b6-225d8f8fc79a dbc67a4b9bdd559c938d3a90e4644b8e {"aliquot_tag": "ALQ_fc652b14", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00369.miRNA-Seq.S35_L004_R1.A C3L-00369 CCRCC miRNA-Seq tissue_normal CPT0006530006 181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L004_R1_001.unaln.bam 225042975 BAM S35_L004_R1 unaligned CPTAC3 49bde798-410f-4797-a5d8-45a0a0445f9b 8332e773c692336bdb76a99b6ee50d17 {"aliquot_tag": "ALQ_851924a1", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006440006 61568aa0-efba-4523-87eb-1b62c4de882e_mirnaseq_gdc_realn.bam 279556836 BAM harmonized CPTAC3 7f0c1a0b-1108-433c-8939-f48cdb0a9a46 9d44e675d1c9938646640a05deda39f2 {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor"} -C3L-00369.RNA-Seq.chimeric.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.chimeric.gdc_realn.bam 87208501 BAM chimeric harmonized CPTAC3 64a01db0-a325-4562-aa0d-613aff5af7d5 279797b1d93185e40c7080223b52903e {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.chimeric.gdc_realn.bam 83007770 BAM chimeric harmonized CPTAC3 5773d4e1-9a55-40b1-9a9f-71092e73cd7a 3d1c3028e3b84009f62d665718929bad {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor"} -C3L-00369.RNA-Seq.genomic.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.genomic.gdc_realn.bam 9141677465 BAM genomic harmonized CPTAC3 bead6e04-d70c-4590-b80c-57c3fc123704 88f15e7dd76a65759ce4b27ce5e39708 {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.genomic.gdc_realn.bam 8930209326 BAM genomic harmonized CPTAC3 58e37c20-2e25-4d3d-a1e3-06b59707fa6d 9fd3f2f19063a95e7e1a1ea3fce0564f {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor"} -C3L-00369.RNA-Seq.S15_L004_R1.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R1_001.fastq.gz 4385949568 FASTQ S15_L004_R1 unaligned CPTAC3 ee01ad02-6971-4ec8-acd6-dd2c4b58b90e a107b01c30a2d6d45bda17df1faa5264 {"aliquot_tag": "ALQ_fc652b14", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00369.RNA-Seq.S15_L004_R2.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R2_001.fastq.gz 4589565712 FASTQ S15_L004_R2 unaligned CPTAC3 21c6bcae-8c89-403c-942e-e017be8fcb22 b0c7fd309ab57f07800aa87151b1fd88 {"aliquot_tag": "ALQ_fc652b14", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00369.RNA-Seq.S46_L005_R1.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R1_001.fastq.gz 4378813042 FASTQ S46_L005_R1 unaligned CPTAC3 b4164ae8-fc6e-483a-962e-d069d7b7a6fa 8bbb53fd2b9445beff0b3e611daeda0d {"aliquot_tag": "ALQ_851924a1", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.RNA-Seq.S46_L005_R2.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R2_001.fastq.gz 4912455712 FASTQ S46_L005_R2 unaligned CPTAC3 88a62ef5-b642-4fbf-a2b5-06b61fb3e50a 2d206a373543db81f057b3e0321c8820 {"aliquot_tag": "ALQ_851924a1", "sample": "S46", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.RNA-Seq.transcriptome.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.transcriptome.gdc_realn.bam 11631459383 BAM transcriptome harmonized CPTAC3 d77cedfa-becc-4962-8ae1-a3602ce843f9 d16144e62332fed1ec781941d60f8054 {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.transcriptome.gdc_realn.bam 13529570135 BAM transcriptome harmonized CPTAC3 4eddd9e9-0f69-4baf-909a-3e55daf9faa0 ad1d7442e074910530972557f776dad6 {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor"} -C3L-00369.WGS.A C3L-00369 CCRCC WGS tissue_normal CPT0006530009 CPT0006530009.WholeGenome.RP-1303.bam 53812280342 BAM aligned CPTAC3 1897be88-4247-4f91-b7fc-d8d131a05162 f03f132600ff37aa1938eb4a413a2ad2 {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.WGS.A.hg38 C3L-00369 CCRCC WGS tissue_normal CPT0006530009 b757f6ca-1d53-48a2-bed1-a00e289f178d_wgs_gdc_realn.bam 78610257604 BAM harmonized CPTAC3 7b19fbaa-991a-4669-85e1-35478e64bf8b 4d6a2e14859f8d3f5f1d972d539701d0 {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.WGS.N C3L-00369 CCRCC WGS blood_normal CPT0002660002 CPT0002660002.WholeGenome.RP-1303.bam 66332014343 BAM aligned CPTAC3 fc5a5e9b-4dc3-490e-b35e-28e153a07361 7df8e46aa096e399bd4706fe5160e197 {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal"} -C3L-00369.WGS.N.hg38 C3L-00369 CCRCC WGS blood_normal CPT0002660002 e01d567c-94df-4606-95ff-13d11ca6d24d_gdc_realn.bam 97640529606 BAM harmonized CPTAC3 165da5ac-80f2-43c8-b596-21756c9000bd bfd4df10b86dc89f2985bab0bf70d7a5 {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal"} -C3L-00369.WGS.T C3L-00369 CCRCC WGS tumor CPT0006440009 CPT0006440009.WholeGenome.RP-1303.bam 59669223587 BAM aligned CPTAC3 f5dd9923-ffba-46b7-98cc-06b9716b5fdb b3aab1e1f6d98e24cd236408ac1b8556 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor"} -C3L-00369.WGS.T.hg38 C3L-00369 CCRCC WGS tumor CPT0006440009 c71f1be9-860c-4cb3-9215-a1a8e78355da_gdc_realn.bam 87033912220 BAM harmonized CPTAC3 de900400-d353-43ae-97c7-cbc296a6305a d737c4bf7567ecc3e17c4a645bb6500a {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor"} -C3L-00369.WXS.A C3L-00369 CCRCC WXS tissue_normal CPT0006530009 CPT0006530009.WholeExome.RP-1303.bam 45017738850 BAM aligned CPTAC3 f0968da9-35f1-4522-b291-56cda8c88b4f b99f032c1de989501b56f6f76781b607 {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.WXS.A.hg38 C3L-00369 CCRCC WXS tissue_normal CPT0006530009 b757f6ca-1d53-48a2-bed1-a00e289f178d_wxs_gdc_realn.bam 61241036030 BAM harmonized CPTAC3 c87b2dc4-2784-4a10-a51b-0899c45065d4 d248dfc8e437a98efe06e22be160f0bb {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00369.WXS.N C3L-00369 CCRCC WXS blood_normal CPT0002660002 CPT0002660002.WholeExome.RP-1303.bam 26355620686 BAM aligned CPTAC3 223db7e4-9112-4d30-b77d-8ba2dff20231 2b8668d675278c7daaccf4269379d69f {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal"} -C3L-00369.WXS.N.hg38 C3L-00369 CCRCC WXS blood_normal CPT0002660002 e01d567c-94df-4606-95ff-13d11ca6d24d_gdc_realn.bam 36084206720 BAM harmonized CPTAC3 b23cc7c4-8879-4c59-9e9c-f8d52cf780a9 d6e36ad62b7038c033146a34649a9c06 {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal"} -C3L-00369.WXS.T C3L-00369 CCRCC WXS tumor CPT0006440009 CPT0006440009.WholeExome.RP-1303.bam 53308474586 BAM aligned CPTAC3 9d1618a7-c76f-4c28-b6d8-1c23384620af 2ff3baa26a3fece4fefda27562d79ab3 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor"} -C3L-00369.WXS.T.hg38 C3L-00369 CCRCC WXS tumor CPT0006440009 c71f1be9-860c-4cb3-9215-a1a8e78355da_gdc_realn.bam 73052393176 BAM harmonized CPTAC3 da894189-0a3e-4a36-8468-19941f32136a f0d1c7a5c2ff2055c36142e1eddb9d59 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor"} -C3L-00395.MethArray.Green.T C3L-00395 PDA Methylation_Array tumor CPT0010020010 202176290095_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dad59a32-aebc-483b-bc24-7fc39ab108b6 c26b1edba06e52259e5dd9d8fd74dc47 {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor"} -C3L-00395.MethArray.Red.T C3L-00395 PDA Methylation_Array tumor CPT0010020010 202176290095_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3ad2b571-3dbd-4245-a2fa-d6becbb75b0f 07f54f59e6b317a51a7b6191b10834b2 {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor"} -C3L-00395.miRNA-Seq.A.hg38 C3L-00395 PDA miRNA-Seq tissue_normal CPT0019230006 ba9dcc2f-fdb1-476c-858c-b4b7c2efc1a3_mirnaseq_gdc_realn.bam 169090918 BAM harmonized CPTAC3 572d478f-cfbf-499d-9a22-a6731d54706c 113279af98b38e768551de2f04eeff1d {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00395.miRNA-Seq.S22_L004_R1.T C3L-00395 PDA miRNA-Seq tumor CPT0010020007 181012_UNC32-K00270_0124_AH223CBBXY_ATCACG_S22_L004_R1_001.unaln.bam 256935267 BAM S22_L004_R1 unaligned CPTAC3 c1f2cfc7-c79b-4e50-8a90-73c80e85d1cd 3f79a4136d45f5ca4fbce513edaed736 {"aliquot_tag": "ALQ_30c99990", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00395.miRNA-Seq.S48_L002_R1.A C3L-00395 PDA miRNA-Seq tissue_normal CPT0019230006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 151629135 BAM S48_L002_R1 unaligned CPTAC3 eef84af0-a30b-4712-874a-799c08eae7f0 f9356e29176f72cd9b584c5d3530ea54 {"aliquot_tag": "ALQ_a2fe646e", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00395.miRNA-Seq.T.hg38 C3L-00395 PDA miRNA-Seq tumor CPT0010020007 94654452-5c3a-461c-b21d-5fd3a9507db5_mirnaseq_gdc_realn.bam 292282611 BAM harmonized CPTAC3 efe7344b-c458-4e01-895c-98dae9b97004 891b80041c738ce9d0eee1484704d8e3 {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor"} -C3L-00395.RNA-Seq.chimeric.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.chimeric.gdc_realn.bam 143632907 BAM chimeric harmonized CPTAC3 bf320102-13e5-4c03-9880-a80741169cf0 a54907a7cd7240bc1ca9e4e5e6aebcce {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00395.RNA-Seq.chimeric.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.chimeric.gdc_realn.bam 108697458 BAM chimeric harmonized CPTAC3 79286d24-2db3-4187-a49a-7d19180ae31b cb7e9fd5a53523df66b095cf45fb8f01 {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor"} -C3L-00395.RNA-Seq.genomic.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.genomic.gdc_realn.bam 9148775730 BAM genomic harmonized CPTAC3 598c4675-b578-4a30-ac4d-2998eb2deee3 d34be33fb2518362aef3229cf59cc50a {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00395.RNA-Seq.genomic.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.genomic.gdc_realn.bam 9061163097 BAM genomic harmonized CPTAC3 a394c60a-d6d9-4b36-adf8-6d5691800b97 f5f414ea994813f6b4d741318aa20d1e {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor"} -C3L-00395.RNA-Seq.S18_L005_R1.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4821204983 FASTQ S18_L005_R1 unaligned CPTAC3 ad5886c9-bb87-453c-bf23-854d27a5db90 ce3cc1e66f548312042dd66eaa7f199c {"aliquot_tag": "ALQ_30c99990", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00395.RNA-Seq.S18_L005_R2.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 5136961470 FASTQ S18_L005_R2 unaligned CPTAC3 d43755e1-f5c2-4d7c-acd5-c860b264a4a2 231b46cc721c716dbd16ea9ab4320e3a {"aliquot_tag": "ALQ_30c99990", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00395.RNA-Seq.S58_L007_R1.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R1_001.fastq.gz 4051028052 FASTQ S58_L007_R1 unaligned CPTAC3 60af23f1-4a28-4fbe-a9da-547a52f9ae40 65be6133f09f239c920dc47135fc8e09 {"aliquot_tag": "ALQ_a2fe646e", "sample": "S58", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00395.RNA-Seq.S58_L007_R2.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R2_001.fastq.gz 4304355992 FASTQ S58_L007_R2 unaligned CPTAC3 b61189fc-f6bf-4922-bbab-20cbc75ddcbe 95e86e73a1901ca19531d55eef87f457 {"aliquot_tag": "ALQ_a2fe646e", "sample": "S58", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00395.RNA-Seq.transcriptome.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.transcriptome.gdc_realn.bam 11989906168 BAM transcriptome harmonized CPTAC3 31f0a9de-98d4-418a-af13-807e9b3c0967 ebe3cd80a8046fdcf0758982e5978988 {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00395.RNA-Seq.transcriptome.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.transcriptome.gdc_realn.bam 13680904031 BAM transcriptome harmonized CPTAC3 90f593d6-bc7f-43c2-9bba-628636509d21 6a603a92519462f4df0650753522a39b {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor"} -C3L-00395.Targeted.T C3L-00395 PDA Targeted_Sequencing tumor CPT0010020010_1 CPT0010020010_1.CustomSelection.RP-1303.PDO-18786.bam 5203736509 BAM aligned CPTAC3 8856957a-cc82-49cb-9f53-9802d4e84818 14fe7961f1781df1d449f151d38801a0 {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor"} -C3L-00395.Targeted.T.hg38 C3L-00395 PDA Targeted_Sequencing tumor CPT0010020010_1 4b9596de-e4e8-4623-a83c-fa87759929d3_targetedsequencing_gdc_realn.bam 7255399917 BAM harmonized CPTAC3 d568922c-87b3-48dd-b38a-52a22d2c0ae8 7e478aba9e0c2c56a37fddac651f199b {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor"} -C3L-00395.WGS.N C3L-00395 PDA WGS blood_normal CPT0019280002 CPT0019280002.WholeGenome.RP-1303.bam 63333471823 BAM aligned CPTAC3 f22e6234-f0cd-44d9-b25e-7c9eba750448 5ab09ecc18e2e61880e71abebcaf8c0d {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal"} -C3L-00395.WGS.N.hg38 C3L-00395 PDA WGS blood_normal CPT0019280002 93b22d31-3cd3-4c13-bc7c-e52fe3a9d69f_gdc_realn.bam 94645348065 BAM harmonized CPTAC3 de7e53d9-cd5d-4a67-8a06-a83f39c52c70 239a615db091b9550f7d5fa3cd33c794 {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal"} -C3L-00395.WGS.T C3L-00395 PDA WGS tumor CPT0010020010 CPT0010020010.WholeGenome.RP-1303.bam 75135915006 BAM aligned CPTAC3 ceb738a4-b53e-4c1b-b4a2-26199337b60c 4befb1fd0f8dd43a02c6e37b767d22db {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor"} -C3L-00395.WGS.T.hg38 C3L-00395 PDA WGS tumor CPT0010020010 e6e523ac-1f81-4b60-bc4b-240d04fa2753_gdc_realn.bam 112256500404 BAM harmonized CPTAC3 fd960885-defd-4423-be11-9749d4f967fd 4b995aca1d111635c08a0db737cd6a3b {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor"} -C3L-00395.WXS.N C3L-00395 PDA WXS blood_normal CPT0019280002 CPT0019280002.WholeExome.RP-1303.bam 35532325280 BAM aligned CPTAC3 a9ef0559-6ed2-4d14-8488-d647ae32acd0 06794e1c4e1ca3506f53456fbb415e10 {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal"} -C3L-00395.WXS.N.hg38 C3L-00395 PDA WXS blood_normal CPT0019280002 93b22d31-3cd3-4c13-bc7c-e52fe3a9d69f_gdc_realn.bam 48728279573 BAM harmonized CPTAC3 aa7d45c9-329b-4891-8f8e-e1fce2b9bda5 88421996fdfc32717cb81822a97443a6 {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal"} -C3L-00395.WXS.T C3L-00395 PDA WXS tumor CPT0010020010_1 CPT0010020010_1.WholeExome.RP-1303.bam 57701385428 BAM aligned CPTAC3 c4753e97-7224-4d8b-8a9c-a19fcbd41b4b 37869e728c4e744d8f1774f1a456d74b {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor"} -C3L-00395.WXS.T C3L-00395 PDA WXS tumor CPT0010020010 CPT0010020010.WholeExome.RP-1303.bam 29199029063 BAM aligned CPTAC3 85ff3ecf-0a1b-491e-bfdf-11af2be2a9ea 3a13980886848413d37836aea3723f9f {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor"} -C3L-00395.WXS.T.hg38 C3L-00395 PDA WXS tumor CPT0010020010_1 4b9596de-e4e8-4623-a83c-fa87759929d3_wxs_gdc_realn.bam 78373781948 BAM harmonized CPTAC3 348402ae-edf8-4c5e-9e00-a9d8f3f9c751 192e8253fc321a175081298a7a2a5f9c {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor"} -C3L-00395.WXS.T.hg38 C3L-00395 PDA WXS tumor CPT0010020010 e6e523ac-1f81-4b60-bc4b-240d04fa2753_gdc_realn.bam 39814400832 BAM harmonized CPTAC3 f0d9cb1a-46f2-4b05-9917-abd752c8162b 4ecf62e3a7c628622eb47a1eca50022e {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor"} -C3L-00401.MethArray.Green.T C3L-00401 PDA Methylation_Array tumor CPT0019300010 202176290046_R01C01_Grn.idat 13676215 IDAT Green NA CPTAC3 6105a4b4-a111-49cd-bdb2-dff96ff0bb54 eae36805fe97e07d192d99ad92ce0919 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor"} -C3L-00401.MethArray.Red.T C3L-00401 PDA Methylation_Array tumor CPT0019300010 202176290046_R01C01_Red.idat 13676215 IDAT Red NA CPTAC3 bae536dc-320c-44fb-ae20-8b51aedd0800 a67e8a5caf20586acd884e5517174db4 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor"} -C3L-00401.miRNA-Seq.S27_L004_R1.T C3L-00401 PDA miRNA-Seq tumor CPT0019300007 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L004_R1_001.unaln.bam 251182047 BAM S27_L004_R1 unaligned CPTAC3 b4717929-7e6d-4b4b-acc5-868415eb743c 2d28403f24c5fdd80444c42fc5a71f93 {"aliquot_tag": "ALQ_5905fd8d", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00401.miRNA-Seq.T.hg38 C3L-00401 PDA miRNA-Seq tumor CPT0019300007 1f5cd054-cbfa-431d-b707-c5b85c43b3ba_mirnaseq_gdc_realn.bam 276651158 BAM harmonized CPTAC3 87a834d0-99fe-4e42-8068-87c172a69968 d6985dfd482209937fae9a3bba9d386c {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor"} -C3L-00401.RNA-Seq.chimeric.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.chimeric.gdc_realn.bam 73491888 BAM chimeric harmonized CPTAC3 65cc94c0-a3f2-4999-b436-4f8814c7e740 29fcf2c86997c63ca32ecc9052e5e63a {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor"} -C3L-00401.RNA-Seq.genomic.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.genomic.gdc_realn.bam 6659507845 BAM genomic harmonized CPTAC3 eded2a3f-f0c8-42b8-9570-fc901b05d5d9 f57cc9b4bf8dcedcf4fcf48705f25338 {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor"} -C3L-00401.RNA-Seq.S17_L005_R1.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3189467493 FASTQ S17_L005_R1 unaligned CPTAC3 64ca103c-f18f-44de-b8b1-123784233175 10adbfc1871badc04af9bba5add83438 {"aliquot_tag": "ALQ_5905fd8d", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00401.RNA-Seq.S17_L005_R2.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 3457497108 FASTQ S17_L005_R2 unaligned CPTAC3 65b84802-756a-4188-8cee-262aac9e0685 c51f136a249f42b92cbd06c103986cb4 {"aliquot_tag": "ALQ_5905fd8d", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00401.RNA-Seq.transcriptome.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.transcriptome.gdc_realn.bam 9884280601 BAM transcriptome harmonized CPTAC3 18dc05c1-f25b-462f-8a33-514fa0458d1b 8219b48df175dc4b81a6bdc2f4e8ea51 {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor"} -C3L-00401.Targeted.T C3L-00401 PDA Targeted_Sequencing tumor CPT0019300010_1 CPT0019300010_1.CustomSelection.RP-1303.PDO-18786.bam 4033825505 BAM aligned CPTAC3 d71359fd-38e4-406f-aac4-4bb5d3ac5a8f 6b80ae1948f012fbc305f2f1a8b28ce2 {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor"} -C3L-00401.Targeted.T.hg38 C3L-00401 PDA Targeted_Sequencing tumor CPT0019300010_1 53031bb7-6216-4ea9-a7fd-86390fb1af88_targetedsequencing_gdc_realn.bam 5723151036 BAM harmonized CPTAC3 2472e2ee-f790-4f1c-a6fa-8a042c427208 a7d2dd5ce1659f341ea892ef770bd87e {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor"} -C3L-00401.WGS.N C3L-00401 PDA WGS blood_normal CPT0019380002 CPT0019380002.WholeGenome.RP-1303.bam 73376627678 BAM aligned CPTAC3 32355b44-6547-41bd-9a82-79e2fd7e2a08 f531463599548c497880e11cfcf08a54 {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00401.WGS.N.hg38 C3L-00401 PDA WGS blood_normal CPT0019380002 7d0ae575-2879-49bf-9b84-f049c7ea5f94_gdc_realn.bam 107918438859 BAM harmonized CPTAC3 313cdfd5-f6c7-4ee9-82b6-d7adad543708 06bb26d490b5d2e8bed5375341be022a {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00401.WGS.T C3L-00401 PDA WGS tumor CPT0019300010 CPT0019300010.WholeGenome.RP-1303.bam 70296074020 BAM aligned CPTAC3 6864f796-2fd8-43af-9efa-10d455ddfd9e 654dc87e96e1ba0fed3cf51594ba80a0 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor"} -C3L-00401.WGS.T.hg38 C3L-00401 PDA WGS tumor CPT0019300010 3656044a-0cdc-4745-8b5b-e7e2f65387a4_gdc_realn.bam 104830319242 BAM harmonized CPTAC3 e61e68e7-0d31-4376-af87-872ec005c6a6 6ee18c6b69f0e178c0860fe7b9be19f5 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor"} -C3L-00401.WXS.N C3L-00401 PDA WXS blood_normal CPT0019380002 CPT0019380002.WholeExome.RP-1303.bam 30823286444 BAM aligned CPTAC3 15ad03f5-e2f8-4309-8790-fdbed852279a 262aeb70b31d2057ef0bcc9350c2aef9 {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00401.WXS.N.hg38 C3L-00401 PDA WXS blood_normal CPT0019380002 7d0ae575-2879-49bf-9b84-f049c7ea5f94_gdc_realn.bam 42369388874 BAM harmonized CPTAC3 c465d059-cd64-4aa1-8446-3289da046032 d8096941bf2f162a4c6ae6ad3c1f9de3 {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00401.WXS.T C3L-00401 PDA WXS tumor CPT0019300010_1 CPT0019300010_1.WholeExome.RP-1303.bam 82311480671 BAM aligned CPTAC3 13597774-6e3e-464c-b834-c543afc73d81 bdd3f010c632468a07f0f1610578dfcb {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor"} -C3L-00401.WXS.T C3L-00401 PDA WXS tumor CPT0019300010 CPT0019300010.WholeExome.RP-1303.bam 55762692551 BAM aligned CPTAC3 dacac610-800d-4c4f-8b65-2dfd0c7ccbbf 874bfe7215acbcc47c92e309c1b35584 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor"} -C3L-00401.WXS.T.hg38 C3L-00401 PDA WXS tumor CPT0019300010_1 53031bb7-6216-4ea9-a7fd-86390fb1af88_wxs_gdc_realn.bam 112778121060 BAM harmonized CPTAC3 9fd1fb54-1e8c-4f0f-93cf-db2c72a20ec1 a7824b3ba207e224cc442408fee04fa0 {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor"} -C3L-00401.WXS.T.hg38 C3L-00401 PDA WXS tumor CPT0019300010 3656044a-0cdc-4745-8b5b-e7e2f65387a4_gdc_realn.bam 77006977130 BAM harmonized CPTAC3 cc0c9dac-72a5-4219-87bb-db8bbcba19b7 6f82817b778f9aea715ccbd7a8856769 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor"} -C3L-00412.ADD_a922a197.miRNA-Seq.S41_L005_R1.T C3L-00412 LUAD miRNA-Seq tumor CPT0023310009 181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L005_R1_001.unaln.bam 168290432 BAM S41_L005_R1 unaligned CPTAC3 a8c5512f-637b-4fb8-8bb7-8ea4bd2b73dd b13c22cda213191b56251aa340ac5ba3 {"aliquot_tag": "ADD_a922a197", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00412.ADD_a922a197.miRNA-Seq.T.hg38 C3L-00412 LUAD miRNA-Seq tumor CPT0023310009 b6613d1e-1322-4a1c-a67e-5c9eb8d025e6_mirnaseq_gdc_realn.bam 188286665 BAM harmonized CPTAC3 8a00598b-3751-4b47-abbd-702bb7c36c13 08500db6876506c11422e00c3995468b {"aliquot_tag": "ADD_a922a197", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3L-00412.MethArray.Green.A C3L-00412 LUAD Methylation_Array tissue_normal CPT0023320009 203028200093_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 255ff5f9-0e34-49c5-993f-60f52be885f5 0d97e5bf69464afebb3e276a8b358478 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.MethArray.Green.T C3L-00412 LUAD Methylation_Array tumor CPT0023310006 202176290087_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d34439f5-6796-4054-b19a-0179ad4c74a1 984a5931e319a4f71fafe6e4eda9a1ef {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor"} -C3L-00412.MethArray.Red.A C3L-00412 LUAD Methylation_Array tissue_normal CPT0023320009 203028200093_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f6726fe0-f7ae-4aa6-8b7d-7d70a54128f6 66983ccd2503a0f6c31e020fafec1675 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.MethArray.Red.T C3L-00412 LUAD Methylation_Array tumor CPT0023310006 202176290087_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 a1dbac11-c6c8-486a-8953-c5daa0b62b9d 60e71e6d0dd9690188ec6f216e34af31 {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor"} -C3L-00412.miRNA-Seq.A.hg38 C3L-00412 LUAD miRNA-Seq tissue_normal CPT0023320006 70098b82-d1c1-4d35-b466-cc950280cf8c_mirnaseq_gdc_realn.bam 224130132 BAM harmonized CPTAC3 68645745-d20f-4983-b31a-520b29f74d49 d40746da015ec06b0ad086e1e048c6aa {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.miRNA-Seq.S35_L002_R1.A C3L-00412 LUAD miRNA-Seq tissue_normal CPT0023320006 181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L002_R1_001.unaln.bam 198746146 BAM S35_L002_R1 unaligned CPTAC3 ac2678f3-1e47-46c8-88f6-c9f8bff35e31 84051983a708c0cf997f2fb8592a9eb8 {"aliquot_tag": "ALQ_7e3dc6d6", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.RNA-Seq.chimeric.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.chimeric.gdc_realn.bam 34048652 BAM chimeric harmonized CPTAC3 e30159c8-dc15-49a8-ad3c-ad7a58c4772b 7a25796947971e98b00bb0cabdbbf786 {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.RNA-Seq.chimeric.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.chimeric.gdc_realn.bam 74415639 BAM chimeric harmonized CPTAC3 1f3d1efa-bb27-4221-935b-aa235eb083a4 238ff15381be787dfe84866453bca078 {"aliquot_tag": "ALQ_50ec79c8", "gdc_sample_type": "Primary Tumor"} -C3L-00412.RNA-Seq.genomic.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.genomic.gdc_realn.bam 6069837862 BAM genomic harmonized CPTAC3 13691e74-e95b-43f0-9a95-9704f21f0163 58e1fb744db99d1c3f5f9c9857105749 {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.RNA-Seq.genomic.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.genomic.gdc_realn.bam 11536304849 BAM genomic harmonized CPTAC3 a2053cb6-0649-44b8-ab7c-c6abc798bf4f 6c7dc14d5cb1ca14e170938b1815f37c {"aliquot_tag": "ALQ_50ec79c8", "gdc_sample_type": "Primary Tumor"} -C3L-00412.RNA-Seq.S12_L004_R1.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R1_001.fastq.gz 4738712256 FASTQ S12_L004_R1 unaligned CPTAC3 b950f8d9-f501-4715-86b8-1eafd595e548 18072ca6685be2b85dea21871794ace1 {"aliquot_tag": "ALQ_50ec79c8", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00412.RNA-Seq.S12_L004_R2.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R2_001.fastq.gz 5066567221 FASTQ S12_L004_R2 unaligned CPTAC3 0e36cba6-2ded-4e79-a7ec-10ad7c1904f7 2897e6c316ed07ebcce8ac9c56dbe9f3 {"aliquot_tag": "ALQ_50ec79c8", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00412.RNA-Seq.S4_L007_R1.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R1_001.fastq.gz 2707979121 FASTQ S4_L007_R1 unaligned CPTAC3 7a8c5c0f-4635-499c-a8cf-a2ecd6bfc5a9 3e0e963fd07a56f152a1c516ffc5f68b {"aliquot_tag": "ALQ_7e3dc6d6", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.RNA-Seq.S4_L007_R2.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R2_001.fastq.gz 3043817258 FASTQ S4_L007_R2 unaligned CPTAC3 16d35297-a6f6-4651-b0b2-fad1ca63e804 0c73625e1ddff7b92e34ffe9679f0b62 {"aliquot_tag": "ALQ_7e3dc6d6", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.RNA-Seq.transcriptome.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.transcriptome.gdc_realn.bam 6720907953 BAM transcriptome harmonized CPTAC3 7c2c257c-cd1f-4891-9d1b-25c5e3e2da03 26051fbaf503a284a7f9f054af8ce683 {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.RNA-Seq.transcriptome.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.transcriptome.gdc_realn.bam 10490668218 BAM transcriptome harmonized CPTAC3 c4caf75b-d199-4050-a29d-d03d09b37b7c e27087db0f34d6b7afa6100091a5d3b8 {"aliquot_tag": "ALQ_50ec79c8", "gdc_sample_type": "Primary Tumor"} -C3L-00412.WGS.A C3L-00412 LUAD WGS tissue_normal CPT0023320009 CPT0023320009.WholeGenome.RP-1303.bam 60587993939 BAM aligned CPTAC3 6ffb1fc9-a512-40a9-b369-3f2e4f4dc4a5 d8695569b445735c60a7c37833a4ed2a {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.WGS.A.hg38 C3L-00412 LUAD WGS tissue_normal CPT0023320009 276865e9-3b98-4544-bc48-f3dba290537c_wgs_gdc_realn.bam 87470066194 BAM harmonized CPTAC3 ce8cadb7-753a-4d6c-95bf-0351c4cc5d54 e7ceef14cdfa85dbe89dc9f4a8ef8c98 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.WGS.N C3L-00412 LUAD WGS blood_normal CPT0024540002 CPT0024540002.WholeGenome.RP-1303.bam 70367211112 BAM aligned CPTAC3 428a6de4-444d-4637-86f8-5f0f4b57d3da d0f10fe284ac992593022d0a776e6ea4 {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00412.WGS.N.hg38 C3L-00412 LUAD WGS blood_normal CPT0024540002 93d63368-79fa-42d3-88df-cf070ac6460d_gdc_realn.bam 101875310751 BAM harmonized CPTAC3 a7fa51d9-6b5a-4674-9cff-60771fba8ce7 7ee3a2c79390ad9171203e726f25e5d4 {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00412.WGS.T C3L-00412 LUAD WGS tumor CPT0023310006 CPT0023310006.WholeGenome.RP-1303.bam 65303200246 BAM aligned CPTAC3 a4163f48-1d66-438f-8d51-0f417959d76d 7a8d5bb68002eb600333e16939c3a343 {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor"} -C3L-00412.WGS.T.hg38 C3L-00412 LUAD WGS tumor CPT0023310006 9cc4a810-0c4e-4b3e-a95c-bc041d77d81d_gdc_realn.bam 94600529937 BAM harmonized CPTAC3 f6057d4a-f89b-4a98-9ba2-b0eb23bc374d f0165bf5225f6ac60bc9209f2a482ebc {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor"} -C3L-00412.WXS.A C3L-00412 LUAD WXS tissue_normal CPT0023320009 CPT0023320009.WholeExome.RP-1303.bam 29984312788 BAM aligned CPTAC3 4cba5640-c791-4f85-980e-6444f54b0617 fbc86ae3f7400283b142ff411f392406 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.WXS.A.hg38 C3L-00412 LUAD WXS tissue_normal CPT0023320009 276865e9-3b98-4544-bc48-f3dba290537c_wxs_gdc_realn.bam 40661049193 BAM harmonized CPTAC3 f7962626-53e9-42fa-b713-16f5ff08febe b9f14874c07b711966ae0917880b2cdf {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00412.WXS.N C3L-00412 LUAD WXS blood_normal CPT0024540002 CPT0024540002.WholeExome.RP-1303.bam 30250965669 BAM aligned CPTAC3 e26bfa84-a16a-480a-961c-4e88430bbe4b d33702b1260f8ce114d9ede2defd4b44 {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00412.WXS.N.hg38 C3L-00412 LUAD WXS blood_normal CPT0024540002 93d63368-79fa-42d3-88df-cf070ac6460d_gdc_realn.bam 41445003359 BAM harmonized CPTAC3 a03ee68b-c664-4f01-b336-068608fc760a 20c439a86df039cd97de814e14f6f9ec {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00412.WXS.T C3L-00412 LUAD WXS tumor CPT0023310006 CPT0023310006.WholeExome.RP-1303.bam 27174693245 BAM aligned CPTAC3 3ef204f0-d61b-4efb-9535-1df7ac65551d c301901caa31ec841112b8b8dd560cc0 {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor"} -C3L-00412.WXS.T.hg38 C3L-00412 LUAD WXS tumor CPT0023310006 9cc4a810-0c4e-4b3e-a95c-bc041d77d81d_gdc_realn.bam 37418463633 BAM harmonized CPTAC3 f725603f-013e-49ec-821e-bf3e38858aa2 34b2a7942030fa9c13c1f794894b4b6d {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor"} -C3L-00413.MethArray.Green.T C3L-00413 UCEC Methylation_Array tumor CPT0009980006 202178770006_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 503585b1-fd8e-4f8d-b453-976197936402 ebaa6642b761e2c4b1a77417927cef11 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor"} -C3L-00413.MethArray.Red.T C3L-00413 UCEC Methylation_Array tumor CPT0009980006 202178770006_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 e76175f9-bc4e-444d-97d5-a42fb29d762b 5d17a762863fe9cd8683b42b9628e85b {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor"} -C3L-00413.miRNA-Seq.S17_L003_R1.T C3L-00413 UCEC miRNA-Seq tumor CPT0009980009 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L003_R1_001.unaln.bam 251069247 BAM S17_L003_R1 unaligned CPTAC3 7a303066-7bd3-4824-923d-f4506de6f969 ccf0c0e4902104a1b32f578619783acf {"aliquot_tag": "ALQ_e3fcb8b3", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00413.miRNA-Seq.T.hg38 C3L-00413 UCEC miRNA-Seq tumor CPT0009980009 db2cda3a-7b8d-491a-b908-1a37bd9590a9_mirnaseq_gdc_realn.bam 273180278 BAM harmonized CPTAC3 067a65f4-8f74-4a74-875a-d43bbbea1dcc 2d1e1986fe05b69b0729e772072b1335 {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.chimeric.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.chimeric.gdc_realn.bam 154588183 BAM chimeric harmonized CPTAC3 b841f579-7837-4882-9d87-d5f30664c063 e35ca2cdd5c1c531151651c183a9ae58 {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.chimeric.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.chimeric.gdc_realn.bam 110013338 BAM chimeric harmonized CPTAC3 da4eb599-553c-46f5-8774-c10e66949cd2 e66ce6cf1c4f94c6560cad1c9fd3e13b {"aliquot_tag": "ALQ_592674da", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.genomic.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.genomic.gdc_realn.bam 9222740317 BAM genomic harmonized CPTAC3 e8811547-39e4-4ca2-a9f8-35ebdd95091e c6de244a27448c7d06bebae77d671abe {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.genomic.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.genomic.gdc_realn.bam 7841772084 BAM genomic harmonized CPTAC3 1865e331-f1ac-45ae-b0d7-8703cdd66009 93fa34a7b1e69a68f2e24daa206d8c53 {"aliquot_tag": "ALQ_592674da", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.S1_L006_R1.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R1_001.fastq.gz 4560838380 FASTQ S1_L006_R1 unaligned CPTAC3 e46aae2a-0162-443c-9f2d-7f95cd2f132e 2bd22863df9cc960c017db0b9373d562 {"aliquot_tag": "ALQ_e3fcb8b3", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.S1_L006_R2.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R2_001.fastq.gz 4758626872 FASTQ S1_L006_R2 unaligned CPTAC3 05b8da1e-d495-4023-9aca-b71417350ee1 03112225a37f051ba49f3b11df819282 {"aliquot_tag": "ALQ_e3fcb8b3", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.S50_R1.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R1_001.fastq.gz 4600956944 FASTQ S50_R1 unaligned CPTAC3 b1d02ba1-b318-4e37-afd5-0f71255be116 0824a04b3574d7ccb735dcbd688aad7a {"aliquot_tag": "ALQ_592674da", "sample": "S50", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.S50_R2.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R2_001.fastq.gz 4698611451 FASTQ S50_R2 unaligned CPTAC3 25a81b26-0732-4579-b846-46aa6439dcbd 79403ef590fbdec5559912b6fdb03d32 {"aliquot_tag": "ALQ_592674da", "sample": "S50", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.transcriptome.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.transcriptome.gdc_realn.bam 12036275147 BAM transcriptome harmonized CPTAC3 a2368177-78f5-4957-945e-e7b901cb17d3 5f0b8312bd8828849f5558e373120775 {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor"} -C3L-00413.RNA-Seq.transcriptome.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.transcriptome.gdc_realn.bam 4727373058 BAM transcriptome harmonized CPTAC3 afd60849-9ab4-4523-898a-f110d7c29cee b068a3de0f389cc68d30105fd3edbb6a {"aliquot_tag": "ALQ_592674da", "gdc_sample_type": "Primary Tumor"} -C3L-00413.WGS.N C3L-00413 UCEC WGS blood_normal CPT0019850002 CPT0019850002.WholeGenome.RP-1303.bam 70009069294 BAM aligned CPTAC3 da80dcfd-41b5-4dc9-9c39-0e8c55ce7f7c ae16b8cad65b87212e0c7b7acb99bfd2 {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00413.WGS.N.hg38 C3L-00413 UCEC WGS blood_normal CPT0019850002 92bebf14-5fd0-453e-99a3-c7041b9cde22_gdc_realn.bam 100033312069 BAM harmonized CPTAC3 22c5648f-e238-4e98-b2d5-32d41ab94314 cd9d46c8e526305379aaf42a0b219bc0 {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00413.WGS.T C3L-00413 UCEC WGS tumor CPT0009980006 CPT0009980006.WholeGenome.RP-1303.bam 57534242825 BAM aligned CPTAC3 514c9e6e-510d-4f2e-871d-8876b8a91c4e b34cbf546578eb4fec9f960a5180ec08 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor"} -C3L-00413.WGS.T.hg38 C3L-00413 UCEC WGS tumor CPT0009980006 ef798c59-f595-45b8-960e-6b36c8169fb9_gdc_realn.bam 84393379739 BAM harmonized CPTAC3 7cd7dd5b-4c04-4f55-88c5-73a813a1b7a8 ff192bd497d73a375e8c16b590bd0f15 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor"} -C3L-00413.WXS.N C3L-00413 UCEC WXS blood_normal CPT0019850002 CPT0019850002.WholeExome.RP-1303.bam 27438219376 BAM aligned CPTAC3 ab051c87-a968-4d29-95ee-19a3f915f967 d0cc230241cc0637478d7f23e55a7b75 {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00413.WXS.N.hg38 C3L-00413 UCEC WXS blood_normal CPT0019850002 92bebf14-5fd0-453e-99a3-c7041b9cde22_gdc_realn.bam 37443124568 BAM harmonized CPTAC3 6058412c-d366-44dd-a0fc-4aad9f6166dc 60756ad869ac1870761651cc1209bebf {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00413.WXS.T C3L-00413 UCEC WXS tumor CPT0009980006 CPT0009980006.WholeExome.RP-1303.bam 24418130622 BAM aligned CPTAC3 acc3ff7e-787d-4a13-bb9d-28932a5ca8bb 689a909b07d6303634882adcf924d34d {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor"} -C3L-00413.WXS.T.hg38 C3L-00413 UCEC WXS tumor CPT0009980006 ef798c59-f595-45b8-960e-6b36c8169fb9_gdc_realn.bam 33283872888 BAM harmonized CPTAC3 f9bf7283-eb23-477d-bc36-b928c96ff1f2 cc3abfb0ba9d096359e5eb382e58c3c9 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor"} -C3L-00415.MethArray.Green.A C3L-00415 LSCC Methylation_Array tissue_normal CPT0010060006 203219640102_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 685fe60c-2d8c-495c-a39a-384851c31b57 0a96ad1914098c401c0967fdc465474e {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.MethArray.Green.T C3L-00415 LSCC Methylation_Array tumor CPT0010050006 202184900111_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 97dfa8d8-e76f-4ecc-9bce-068862f97005 a640969765cba375703e85788460e2c6 {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor"} -C3L-00415.MethArray.Red.A C3L-00415 LSCC Methylation_Array tissue_normal CPT0010060006 203219640102_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 943aae45-c6d7-4c19-9bd7-c0f7713c2e01 b41e21aecf16552b0ff1ebce1ba3b7e8 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.MethArray.Red.T C3L-00415 LSCC Methylation_Array tumor CPT0010050006 202184900111_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 5bee55ac-1179-42be-8761-cc7e0d1a40d3 79b9ad1953a53140f657f9eae37563cc {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor"} -C3L-00415.miRNA-Seq.A.hg38 C3L-00415 LSCC miRNA-Seq tissue_normal CPT0010060009 ff68f43b-737b-4e67-923b-049c1c54b1d8_mirnaseq_gdc_realn.bam 188447500 BAM harmonized CPTAC3 b5a69756-fac6-4c34-929b-b52c970979c0 43f02b98c442aa5feaa9d2e8cd1b9f9f {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.miRNA-Seq.S18_L003_R1.T C3L-00415 LSCC miRNA-Seq tumor CPT0010050009 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L003_R1_001.unaln.bam 201734226 BAM S18_L003_R1 unaligned CPTAC3 e02e521a-e8e6-44a3-9f1c-490d382d6d9b 51fdab7ceda9c9de060419b9f3c3c42c {"aliquot_tag": "ALQ_65516887", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00415.miRNA-Seq.S40_L006_R1.A C3L-00415 LSCC miRNA-Seq tissue_normal CPT0010060009 181113_UNC31-K00269_0164_AH23NNBBXY_CCGTCC_S40_L006_R1_001.unaln.bam 166958626 BAM S40_L006_R1 unaligned CPTAC3 70c8df29-a643-480f-b7d1-914d7d9cbecb 76a26e883be33b540269e95bc8dbe2ed {"aliquot_tag": "ALQ_22f11257", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.miRNA-Seq.T.hg38 C3L-00415 LSCC miRNA-Seq tumor CPT0010050009 9f719a4a-a9b0-4a83-82b3-b1e1178dade5_mirnaseq_gdc_realn.bam 218047899 BAM harmonized CPTAC3 255eea37-2692-45c8-84cf-15fa9e7ff0ea 5b4f53c8b44b8773db58f48427ad278d {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor"} -C3L-00415.RNA-Seq.chimeric.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.chimeric.gdc_realn.bam 39453112 BAM chimeric harmonized CPTAC3 1b784dfa-f950-4018-a2e0-849b13d67960 41189350674453aa071289cae59182af {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.RNA-Seq.chimeric.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.chimeric.gdc_realn.bam 137800946 BAM chimeric harmonized CPTAC3 dee732dd-0d32-4c93-ac07-d04e479697e2 cddff14ad6dd368000bdea9a2072e901 {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor"} -C3L-00415.RNA-Seq.genomic.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.genomic.gdc_realn.bam 7539237893 BAM genomic harmonized CPTAC3 341e6ec1-fbed-4439-b762-da0b7fe11488 090a34bd90f3358a0a51b2d399774031 {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.RNA-Seq.genomic.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.genomic.gdc_realn.bam 7562413996 BAM genomic harmonized CPTAC3 96821645-887e-4362-b647-d3a28c813597 1c9745ad6af05f11728b83184ff00f78 {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor"} -C3L-00415.RNA-Seq.S16_L004_R1.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3647270243 FASTQ S16_L004_R1 unaligned CPTAC3 8100a0ca-c430-4b33-85cf-3abe321fb359 31bd5bc98c869ec965c2ad2f9bd5fb52 {"aliquot_tag": "ALQ_22f11257", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.RNA-Seq.S16_L004_R2.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3753832644 FASTQ S16_L004_R2 unaligned CPTAC3 dc450c88-d669-4441-a21f-5acc6150c721 19ee760a4cd348b15f5f52870352f024 {"aliquot_tag": "ALQ_22f11257", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.RNA-Seq.S4_L006_R1.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R1_001.fastq.gz 3765173950 FASTQ S4_L006_R1 unaligned CPTAC3 49738f7f-2551-46ea-83e9-c36f55a2d3cb b6a35eecb42be2131547a5c3821bd9a6 {"aliquot_tag": "ALQ_65516887", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00415.RNA-Seq.S4_L006_R2.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R2_001.fastq.gz 4094701287 FASTQ S4_L006_R2 unaligned CPTAC3 b04807f8-ed2a-4bba-8647-feb8bd679a10 f853d808443d3b17c63f134499ac1bf8 {"aliquot_tag": "ALQ_65516887", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00415.RNA-Seq.transcriptome.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.transcriptome.gdc_realn.bam 9440510215 BAM transcriptome harmonized CPTAC3 ffdf9074-4efd-4507-94a1-98601bb6627e 27410ab14ba2d44a3d886e71b381c3dd {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.RNA-Seq.transcriptome.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.transcriptome.gdc_realn.bam 10288975537 BAM transcriptome harmonized CPTAC3 a17cefd9-50c3-4ceb-95d2-8fc5ba6aa7ac 91e56e65d0d991a74dd8f1ce20c6287e {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor"} -C3L-00415.WGS.A C3L-00415 LSCC WGS tissue_normal CPT0010060006 CPT0010060006.WholeGenome.RP-1303.bam 56653408842 BAM aligned CPTAC3 3d5af375-53b4-4bd2-81ba-8d2fe82e3c0d 42a8deb9d43d03bc1e04127b4ed6f306 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.WGS.A.hg38 C3L-00415 LSCC WGS tissue_normal CPT0010060006 46ef162e-6ea4-45a1-adac-24b1615c7c8a_wgs_gdc_realn.bam 83752007066 BAM harmonized CPTAC3 06add90a-ada5-4b00-88a2-c23331fd9f55 271066884bfc6243d8629676f05dba72 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.WGS.N C3L-00415 LSCC WGS blood_normal CPT0019860002 CPT0019860002.WholeGenome.RP-1303.bam 72720325291 BAM aligned CPTAC3 5cac4905-b45a-438a-b0ef-a3bc37a0bb93 4a32d5bfe65969d6b108ccedb1526d3d {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal"} -C3L-00415.WGS.N.hg38 C3L-00415 LSCC WGS blood_normal CPT0019860002 ded35b91-a827-4d01-aba8-765d7ba7e4ac_gdc_realn.bam 107561633801 BAM harmonized CPTAC3 1415f178-da4e-478d-9909-53e201c259e4 5400a92ed7ddaa8e5aba963c266e19fb {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal"} -C3L-00415.WGS.T C3L-00415 LSCC WGS tumor CPT0010050006 CPT0010050006.WholeGenome.RP-1303.bam 72857802431 BAM aligned CPTAC3 3c76c2ea-8e4d-40cc-8ac2-696530e1487b 60f44517441cc90286e39efb77c8060d {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor"} -C3L-00415.WGS.T.hg38 C3L-00415 LSCC WGS tumor CPT0010050006 6acbde3c-8e88-4c38-85d5-8868552a6441_gdc_realn.bam 107285908367 BAM harmonized CPTAC3 51a9bfe4-562f-44a7-b1c5-e5237c92b927 d2d2d6bd38cfc87a09f48e8f318a1509 {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor"} -C3L-00415.WXS.A C3L-00415 LSCC WXS tissue_normal CPT0010060006 CPT0010060006.WholeExome.RP-1303.bam 48248833359 BAM aligned CPTAC3 9417d8cb-1b83-4b6f-a71a-a75c7b15a53f 92e19f144cd3b9ee5f4cd6abd4834fe1 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.WXS.A.hg38 C3L-00415 LSCC WXS tissue_normal CPT0010060006 46ef162e-6ea4-45a1-adac-24b1615c7c8a_wxs_gdc_realn.bam 64522643308 BAM harmonized CPTAC3 a8abf789-a228-4661-acba-b876daf59b53 6927db17f167636da3a5a10345164697 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00415.WXS.N C3L-00415 LSCC WXS blood_normal CPT0019860002 CPT0019860002.WholeExome.RP-1303.bam 27749597059 BAM aligned CPTAC3 8ddd3003-c366-42fe-8378-cd5ae2bb74c5 676d779b4ae7c1d4c114c263f75773e6 {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal"} -C3L-00415.WXS.N.hg38 C3L-00415 LSCC WXS blood_normal CPT0019860002 ded35b91-a827-4d01-aba8-765d7ba7e4ac_gdc_realn.bam 37758559568 BAM harmonized CPTAC3 9767a9c2-d36b-4cd8-b3bf-e007b9766cc1 153661539f607c30724b01a2b4da1d38 {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal"} -C3L-00415.WXS.T C3L-00415 LSCC WXS tumor CPT0010050006 CPT0010050006.WholeExome.RP-1303.bam 31372704890 BAM aligned CPTAC3 237555a6-64b3-4186-b811-b9a8c1e54956 9d286a61daf7dbaa01fb832c03a079c5 {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor"} -C3L-00415.WXS.T.hg38 C3L-00415 LSCC WXS tumor CPT0010050006 6acbde3c-8e88-4c38-85d5-8868552a6441_gdc_realn.bam 43394411617 BAM harmonized CPTAC3 b9f0018b-bfa8-4395-9459-f7adc1fe7cc3 47ab62f38071db31a4382b8b047a869a {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor"} -C3L-00416.MethArray.Green.A C3L-00416 CCRCC Methylation_Array tissue_normal CPT0010120009 203027390029_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f87e68ad-e700-473a-8c31-96486ef574cc 145e153cb4ea6d495bcbb01655902d1c {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.MethArray.Green.T C3L-00416 CCRCC Methylation_Array tumor CPT0010110006 202184990063_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a566d64a-d48f-47a3-9050-a57809535ca1 30697ac2ca380d2830cf9990a921b5db {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor"} -C3L-00416.MethArray.Red.A C3L-00416 CCRCC Methylation_Array tissue_normal CPT0010120009 203027390029_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 d7b31127-223b-4c8d-92df-f497fb13767e 2d368b830a098045b9b0be3e5f1bee72 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.MethArray.Red.T C3L-00416 CCRCC Methylation_Array tumor CPT0010110006 202184990063_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 0c7fef6d-2e90-4ccd-b9cd-4761fe124b57 b5e0c35e960ec527e4f9f0020f18d9be {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor"} -C3L-00416.miRNA-Seq.A.hg38 C3L-00416 CCRCC miRNA-Seq tissue_normal CPT0010120006 0cc44aa0-99c3-4b03-b48a-962194fd24cd_mirnaseq_gdc_realn.bam 222206060 BAM harmonized CPTAC3 13542008-5225-4a0e-9703-e97a71d21553 afd12cc2e1c9a7af74888b1e38cee5ab {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.miRNA-Seq.S19_L004_R1.T C3L-00416 CCRCC miRNA-Seq tumor CPT0010110009 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L004_R1_001.unaln.bam 221983352 BAM S19_L004_R1 unaligned CPTAC3 5fd421fe-f0d3-487b-b0bc-b365c18f961b 257b3d974a9368f380c3e0397fc39b6d {"aliquot_tag": "ALQ_5b8d1de2", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00416.miRNA-Seq.S43_L004_R1.A C3L-00416 CCRCC miRNA-Seq tissue_normal CPT0010120006 181108_UNC31-K00269_0163_BH23TVBBXY_TACAGC_S43_L004_R1_001.unaln.bam 199527009 BAM S43_L004_R1 unaligned CPTAC3 49a2d1d2-0e41-4561-ab42-85f7dddfc5e3 57de0daf0c8d0269625e306c08310a14 {"aliquot_tag": "ALQ_8c927aa3", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.miRNA-Seq.T.hg38 C3L-00416 CCRCC miRNA-Seq tumor CPT0010110009 bd92802d-9e7d-4dd6-bf53-243b2d4a4421_mirnaseq_gdc_realn.bam 241424959 BAM harmonized CPTAC3 0f7cd17a-47f0-4096-862a-a839a2ece81a 43869dd7beb2b733526ff91f672283fc {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor"} -C3L-00416.RNA-Seq.chimeric.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.chimeric.gdc_realn.bam 82424783 BAM chimeric harmonized CPTAC3 7c18dcb1-8f59-4b71-ba57-bb0be19132b3 0bc8ade8005632cfb592822d9eada4c9 {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.RNA-Seq.chimeric.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.chimeric.gdc_realn.bam 103205184 BAM chimeric harmonized CPTAC3 9d818be3-95e7-4ddc-838d-97a3d39995d0 8ae9db32a089e263504c4853759a6be1 {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor"} -C3L-00416.RNA-Seq.genomic.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.genomic.gdc_realn.bam 8861154512 BAM genomic harmonized CPTAC3 0a904b33-982e-4502-a09e-5708c724239f 70cbcbcc718ffa51ce50007e92fcb80d {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.RNA-Seq.genomic.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.genomic.gdc_realn.bam 7075074193 BAM genomic harmonized CPTAC3 de2604b3-678a-4b6f-a9a2-3cfc60549b0d 10d03f0a7674dda878d52ac686041e3e {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor"} -C3L-00416.RNA-Seq.S21_L006_R1.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R1_001.fastq.gz 3776319086 FASTQ S21_L006_R1 unaligned CPTAC3 2cb1f65c-8544-4a2e-8e53-72184f472a1a 4bbe25de640e3edb7e66600e87da6ab2 {"aliquot_tag": "ALQ_5b8d1de2", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00416.RNA-Seq.S21_L006_R2.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R2_001.fastq.gz 4118298802 FASTQ S21_L006_R2 unaligned CPTAC3 ad8325a4-34b9-473f-946e-1a779f0bf08b 8a0499fcd68ec53c276c76dd8460749a {"aliquot_tag": "ALQ_5b8d1de2", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00416.RNA-Seq.S45_L004_R1.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R1_001.fastq.gz 4155676499 FASTQ S45_L004_R1 unaligned CPTAC3 3b4d239a-0a2d-426c-916d-d3a8a92b5573 6e8e90e689298ad85e0568fef8a125f7 {"aliquot_tag": "ALQ_8c927aa3", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.RNA-Seq.S45_L004_R2.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R2_001.fastq.gz 4301948352 FASTQ S45_L004_R2 unaligned CPTAC3 bc1b8613-80a4-4b79-ab7d-479448188861 4c686133dbd6213e5210f4071a527d31 {"aliquot_tag": "ALQ_8c927aa3", "sample": "S45", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.RNA-Seq.transcriptome.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.transcriptome.gdc_realn.bam 9710188396 BAM transcriptome harmonized CPTAC3 0fe65e04-9be9-42dd-aa6e-d4cedb07e4e8 eee66291e1325fca04020df23334b40c {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.RNA-Seq.transcriptome.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.transcriptome.gdc_realn.bam 10505420732 BAM transcriptome harmonized CPTAC3 2267b4d1-bda2-433a-a91f-bd24b9b5eb37 f4663cd02bbb95dbb8a85d55a838f3c2 {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor"} -C3L-00416.WGS.A C3L-00416 CCRCC WGS tissue_normal CPT0010120009 CPT0010120009.WholeGenome.RP-1303.bam 52231401379 BAM aligned CPTAC3 a3691232-f058-4e5b-9aca-ab8756a1cd82 e143204308a81d1630dde547bc22b254 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.WGS.A.hg38 C3L-00416 CCRCC WGS tissue_normal CPT0010120009 11addf54-be1c-4ab9-9aab-ddcd9708392b_wgs_gdc_realn.bam 77064710424 BAM harmonized CPTAC3 be631715-80a0-4730-9295-b69cfa13ff26 a56d21d8e0dae821c4dd53c7cac4dfb6 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.WGS.N C3L-00416 CCRCC WGS blood_normal CPT0019870002 CPT0019870002.WholeGenome.RP-1303.bam 61017682753 BAM aligned CPTAC3 8b88bfb2-c636-4b0c-8fa6-a739abafb23d c508881ee3bf7d7f0a45b929ab6ed3c7 {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00416.WGS.N.hg38 C3L-00416 CCRCC WGS blood_normal CPT0019870002 d0950d5e-e5ef-4f12-8c6f-3b28522b1778_gdc_realn.bam 87578282192 BAM harmonized CPTAC3 bc2be928-6599-4690-846a-2227c275d164 278206b628696f52d915fa7cea8e85b9 {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00416.WGS.T C3L-00416 CCRCC WGS tumor CPT0010110006 CPT0010110006.WholeGenome.RP-1303.bam 68133628114 BAM aligned CPTAC3 e5aa9737-b213-4046-99c8-1abea052a0b4 382b6f984bc4469f654e0715cc59157b {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor"} -C3L-00416.WGS.T.hg38 C3L-00416 CCRCC WGS tumor CPT0010110006 b6b85465-cb0b-4539-9e85-639a6fe66086_gdc_realn.bam 99980462249 BAM harmonized CPTAC3 27f56b06-46e8-45a5-8bb0-f4c91b69893d 28b5604a08c4533e4ec89d22435acfb4 {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor"} -C3L-00416.WXS.A C3L-00416 CCRCC WXS tissue_normal CPT0010120009 CPT0010120009.WholeExome.RP-1303.bam 36117625072 BAM aligned CPTAC3 2b8a9556-1b0f-44e1-8b7b-356206e38cd7 0f3e51c9ff93fe8e1af10da2fa1ee0cd {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.WXS.A.hg38 C3L-00416 CCRCC WXS tissue_normal CPT0010120009 11addf54-be1c-4ab9-9aab-ddcd9708392b_wxs_gdc_realn.bam 48912416010 BAM harmonized CPTAC3 d04199b0-57db-4f6d-9445-9f0128adbb1e d2fcd9748265d4828274e86d39bec0e5 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00416.WXS.N C3L-00416 CCRCC WXS blood_normal CPT0019870002 CPT0019870002.WholeExome.RP-1303.bam 22962372228 BAM aligned CPTAC3 20c30303-310d-4741-af36-d228ac1c1273 5e8d8d9bab10b42383864eaafd2846bf {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00416.WXS.N.hg38 C3L-00416 CCRCC WXS blood_normal CPT0019870002 d0950d5e-e5ef-4f12-8c6f-3b28522b1778_gdc_realn.bam 31037809714 BAM harmonized CPTAC3 e2a72d3d-3c5f-4a0c-9edb-c6dd309c598d d6bf68de9da9bde686cef1222c7b99cb {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00416.WXS.T C3L-00416 CCRCC WXS tumor CPT0010110006 CPT0010110006.WholeExome.RP-1303.bam 23982465233 BAM aligned CPTAC3 3eba30c4-6c5d-4ad0-8bd9-3d7702c3cc7a f1ec465a2f97614270cb63a0bd9061a0 {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor"} -C3L-00416.WXS.T.hg38 C3L-00416 CCRCC WXS tumor CPT0010110006 b6b85465-cb0b-4539-9e85-639a6fe66086_gdc_realn.bam 33078996768 BAM harmonized CPTAC3 c50c5bcd-3801-4fd5-b0df-b3a834542d18 da1330a496bb723b21d9889fca230a22 {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_2112978e.MethArray.Green.T C3L-00418 CCRCC Methylation_Array tumor CPT0006640009 204372030139_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 886efe6c-f014-41d7-844c-6e6be155d8a8 f37cfd3656659892d9b64966f9478578 {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_2112978e.MethArray.Red.T C3L-00418 CCRCC Methylation_Array tumor CPT0006640009 204372030139_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 0f262075-705b-42fd-b3fc-f0db3583afb2 e699a07b12de7279227a64dd5dfb627c {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_2112978e.WGS.T C3L-00418 CCRCC WGS tumor CPT0006640009 CPT0006640009.WholeGenome.RP-2158.bam 24559038885 BAM aligned CPTAC3 2a7fd171-50e7-432b-aa18-62beb344f20e b1fee4e6b5d952cea66bf91660ca3a9b {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_2112978e.WGS.T.hg38 C3L-00418 CCRCC WGS tumor CPT0006640009 8cf9a884-3e61-443f-8784-17e365f879cd_wgs_gdc_realn.bam 73968649734 BAM harmonized CPTAC3 42e95e0b-d1ea-435d-9ad5-912791b0ae11 dbb2cd3323f5f4f60bf65da1161b85b5 {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_2112978e.WXS.T C3L-00418 CCRCC WXS tumor CPT0006640009 CPT0006640009.WholeExome.RP-1303.bam 22814762937 BAM aligned CPTAC3 49efab1d-05c1-4860-8a71-1fc788f788af f92ec829b18ec0f790f72c5652fa2f4f {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_2112978e.WXS.T.hg38 C3L-00418 CCRCC WXS tumor CPT0006640009 8cf9a884-3e61-443f-8784-17e365f879cd_wxs_gdc_realn.bam 31109924748 BAM harmonized CPTAC3 05abe915-a00c-43a7-bb15-3cb854536aac 12ca7b694fe5313b3633a21b03139fd8 {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_66b2ed5e.MethArray.Green.T C3L-00418 CCRCC Methylation_Array tumor CPT0006670009 204372030164_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0f673095-3367-47e1-b142-09a66f0f5f62 d7a8cc4abf39ad424d67f15501fad40c {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_66b2ed5e.MethArray.Red.T C3L-00418 CCRCC Methylation_Array tumor CPT0006670009 204372030164_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 a12c43f5-1650-474c-ae88-63fa2302f3f8 9814878e48c58ea1ccacc1d29f8e45c7 {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_66b2ed5e.WGS.T C3L-00418 CCRCC WGS tumor CPT0006670009 CPT0006670009.WholeGenome.RP-2158.bam 22666825920 BAM aligned CPTAC3 27f10cd5-0080-4a60-b99c-14eaba27ccac d9f7ffbb4d44fc38a68a16e4ce8609ec {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_66b2ed5e.WGS.T.hg38 C3L-00418 CCRCC WGS tumor CPT0006670009 f14f7aeb-9755-4228-9d3a-8d6404e4b3a6_wgs_gdc_realn.bam 64837056758 BAM harmonized CPTAC3 c1ce01d8-738f-4c0d-bf26-e64f4dbfbc06 ad6a8a42a3fbe29546a65a22e04918fa {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_66b2ed5e.WXS.T C3L-00418 CCRCC WXS tumor CPT0006670009 CPT0006670009.WholeExome.RP-1303.bam 20956379244 BAM aligned CPTAC3 b1332c8f-0f93-4455-aeea-16129fdbb736 b6fe196def5015ab94284e5561e57bb6 {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_66b2ed5e.WXS.T.hg38 C3L-00418 CCRCC WXS tumor CPT0006670009 f14f7aeb-9755-4228-9d3a-8d6404e4b3a6_wxs_gdc_realn.bam 28702238233 BAM harmonized CPTAC3 bd81f716-dc87-41b3-ae23-d9fa25c37a30 97b9d25496f3c735c82ab15eb791f297 {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_b1ad8a1f.miRNA-Seq.S23_L002_R1.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006640006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAAAAG_S23_L002_R1_001.unaln.bam 287268011 BAM S23_L002_R1 unaligned CPTAC3 4f962193-cd5a-42de-8fd0-df40f0f97db9 600f54223bda111cc1f81973566ad04a {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_b1ad8a1f.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006640006 d20c75ec-7738-49fd-bc04-5aecbb640490_mirnaseq_gdc_realn.bam 322795809 BAM harmonized CPTAC3 15af38d6-1b6c-47ec-905b-7cf6b6fba7bc 6463cb6312704a8be646fe1acbc3b4a4 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_b1ad8a1f.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.chimeric.gdc_realn.bam 45408799 BAM chimeric harmonized CPTAC3 b1b55e04-de3e-438b-82bd-67bfb34a5389 13a387070e7520d66e4661e1e52470aa {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_b1ad8a1f.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.genomic.gdc_realn.bam 7396376926 BAM genomic harmonized CPTAC3 0874e000-1854-475a-b8cb-af856d2a63ab 88e5410f2c566e8aba1dbe5263f65723 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_b1ad8a1f.RNA-Seq.S23_L006_R1.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R1_001.fastq.gz 3456249727 FASTQ S23_L006_R1 unaligned CPTAC3 f86a8aa3-2366-4dec-81b2-bd0ac65a29f4 c2724b55d4115b06469f124d6120eaa7 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_b1ad8a1f.RNA-Seq.S23_L006_R2.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R2_001.fastq.gz 3947205801 FASTQ S23_L006_R2 unaligned CPTAC3 998539bc-b93c-4779-b240-b7fd479bde71 fa3bfe113af2f158143009f248613980 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_b1ad8a1f.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.transcriptome.gdc_realn.bam 10420873871 BAM transcriptome harmonized CPTAC3 a536a5c0-f912-4540-a3b1-75411bad868a 14ccc067b19a1e3900f07ffe4dbd929b {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_f60df0cf.miRNA-Seq.S24_L002_R1.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006670006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L002_R1_001.unaln.bam 423544457 BAM S24_L002_R1 unaligned CPTAC3 5a82f5a1-bcc8-4e7c-a660-100f26372508 ad8edad50aa6c7eeba2f81e3f7fb094d {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_f60df0cf.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006670006 99d7de39-a684-4871-9642-fa73ff1a33fa_mirnaseq_gdc_realn.bam 466240308 BAM harmonized CPTAC3 aef293e7-838b-4947-8f8f-9529091e2d2c 28ec4a0b8e619bb9e4231407eaf61cad {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_f60df0cf.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.chimeric.gdc_realn.bam 69517678 BAM chimeric harmonized CPTAC3 3c6366fa-cfcc-44c1-9f9b-a68fd5eb09df 0e118c5528cc246314613adf524eefcb {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_f60df0cf.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.genomic.gdc_realn.bam 8021560633 BAM genomic harmonized CPTAC3 bb26ddae-e83e-4492-b864-acff2028b900 6d2872bc8cb9bf2a33d9a8fd27f88485 {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_f60df0cf.RNA-Seq.S5_L002_R1.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R1_001.fastq.gz 3828295281 FASTQ S5_L002_R1 unaligned CPTAC3 7976d875-054b-4336-83eb-2a71d65f8d01 d40b59135e3c30024bddeeeda56ea6d1 {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_f60df0cf.RNA-Seq.S5_L002_R2.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R2_001.fastq.gz 4380437830 FASTQ S5_L002_R2 unaligned CPTAC3 d69436e3-48bf-48d3-b5b3-67fde49da61a 399363a6a726b4b1b373c351ee40ac5c {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00418.DUP_f60df0cf.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.transcriptome.gdc_realn.bam 11204754864 BAM transcriptome harmonized CPTAC3 429ca441-fb99-40d2-882c-d55a88e17139 4987b3db76f66a10b1f69c72ff36b656 {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00418.MethArray.Green.A C3L-00418 CCRCC Methylation_Array tissue_normal CPT0006730014 204930640051_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 73a1b9b9-7cdc-4790-b1f2-07edee1545bd 1b24aec57f707adb63329f00cc1cf5e6 {"aliquot_tag": "ALQ_3fc4d5c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.MethArray.Green.T C3L-00418 CCRCC Methylation_Array tumor CPT0006630009 202178770008_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8ec5886e-540b-4c06-9d6e-18cab5bd7a91 1b8b51a4f9e29580ca66c78476e50583 {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor"} -C3L-00418.MethArray.Red.A C3L-00418 CCRCC Methylation_Array tissue_normal CPT0006730014 204930640051_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 be152dca-4474-402c-80bc-331deb3e6556 00b1e6086b9797e5576de7a7c6a753b9 {"aliquot_tag": "ALQ_3fc4d5c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.MethArray.Red.T C3L-00418 CCRCC Methylation_Array tumor CPT0006630009 202178770008_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 35106cb3-71c4-4e6d-b36b-04e29bfe2723 7803d4c5a5ff122c1cfbc5ae69dca5cb {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor"} -C3L-00418.miRNA-Seq.A.hg38 C3L-00418 CCRCC miRNA-Seq tissue_normal CPT0006730006 01af162e-d248-447b-b306-4a10f0696ebf_mirnaseq_gdc_realn.bam 221884944 BAM harmonized CPTAC3 3523caff-06cf-4c7b-a511-14608b2d2ba0 dbc94c20d8479b720104c08dc6eb64e4 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.miRNA-Seq.S13_L005_R1.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006630006 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L005_R1_001.unaln.bam 241201505 BAM S13_L005_R1 unaligned CPTAC3 20d17324-834b-4935-a393-9e351a37d657 267e107ca5d9f505877da37bac050b34 {"aliquot_tag": "ALQ_38d560f", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00418.miRNA-Seq.S38_L004_R1.A C3L-00418 CCRCC miRNA-Seq tissue_normal CPT0006730006 181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L004_R1_001.unaln.bam 200119320 BAM S38_L004_R1 unaligned CPTAC3 5c27c7e9-d1d9-48dc-9dec-9669999b2823 de7cda061e4d8752e43fe9777e767881 {"aliquot_tag": "ALQ_c8d185aa", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006630006 46e647fb-3110-4a7b-b5e6-aee3d5bbe861_mirnaseq_gdc_realn.bam 265917439 BAM harmonized CPTAC3 24d34ef4-d4d5-47c1-96cc-858aca0ee4f3 a258dcd37d2b226f20c0ef4722a271b7 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor"} -C3L-00418.RNA-Seq.chimeric.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.chimeric.gdc_realn.bam 45098876 BAM chimeric harmonized CPTAC3 320d9b56-2e9c-4e94-9430-e1b96d8c9def 062d66befc0667f08bfd3f9883c36904 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.chimeric.gdc_realn.bam 66170138 BAM chimeric harmonized CPTAC3 19813f2e-0c87-4fca-8a09-a3be000dd7d5 bf07ba9a201db96e0de34b1e09dd9b34 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor"} -C3L-00418.RNA-Seq.genomic.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.genomic.gdc_realn.bam 8333248725 BAM genomic harmonized CPTAC3 cfac19df-712a-48d6-b5ff-85efe0f53ef2 bad1877ca134a2ff97f257681b21f577 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.genomic.gdc_realn.bam 6986256136 BAM genomic harmonized CPTAC3 24e959fe-5b8d-49e2-a105-d3b23452835b 6ad12e0f5a99f92e0bc0ac42c7a2ec87 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor"} -C3L-00418.RNA-Seq.S14_L004_R1.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R1_001.fastq.gz 3223751307 FASTQ S14_L004_R1 unaligned CPTAC3 b67fdb10-3928-4421-894e-628861348b6c f01fe22ecf1155623af3c3f117c9bd01 {"aliquot_tag": "ALQ_38d560f", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00418.RNA-Seq.S14_L004_R2.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R2_001.fastq.gz 3402799451 FASTQ S14_L004_R2 unaligned CPTAC3 a3a77dde-7a40-43fa-b991-10fa842d7115 aaf6b0054d2da887bdcef86bd0c1205c {"aliquot_tag": "ALQ_38d560f", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00418.RNA-Seq.S36_L007_R1.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R1_001.fastq.gz 4038425068 FASTQ S36_L007_R1 unaligned CPTAC3 e75e4811-3a6a-4467-a0d1-a0282b439dc1 ea76d279b70687eb7711ac703ac26975 {"aliquot_tag": "ALQ_c8d185aa", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.RNA-Seq.S36_L007_R2.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R2_001.fastq.gz 4475052648 FASTQ S36_L007_R2 unaligned CPTAC3 aeb417bd-16a8-4c0b-85ad-7b361d4a701f bddd330f3c6e36078e79b9451201a657 {"aliquot_tag": "ALQ_c8d185aa", "sample": "S36", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.RNA-Seq.transcriptome.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.transcriptome.gdc_realn.bam 9392721163 BAM transcriptome harmonized CPTAC3 d66c7add-6e8a-430a-bdcc-408e3d211a56 3baf094bf02c2d082c957e031a377a01 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.transcriptome.gdc_realn.bam 9616156958 BAM transcriptome harmonized CPTAC3 7b56318d-01cb-462a-a98e-43a8794d2782 90516e740bd5d8c591f4df44370c7935 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor"} -C3L-00418.WGS.A C3L-00418 CCRCC WGS tissue_normal CPT0006730009 CPT0006730009.WholeGenome.RP-1303.bam 50879281885 BAM aligned CPTAC3 08697189-84ba-4286-aab4-91ece3a64da1 fcb000ac2f6b8a92b7c358bdaf69b91b {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.WGS.A.hg38 C3L-00418 CCRCC WGS tissue_normal CPT0006730009 0637f25d-c54f-4f85-b3b5-4fcb7f1d2598_wgs_gdc_realn.bam 74558657539 BAM harmonized CPTAC3 cdca1d3d-5076-4ca0-9881-aeff1631e5b0 f676ba24056a16d761f779dcd0424fc7 {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.WGS.N C3L-00418 CCRCC WGS blood_normal CPT0002730002 CPT0002730002.WholeGenome.RP-1303.bam 56793444132 BAM aligned CPTAC3 957488af-a20f-4449-afab-f5028fc67ab9 771db0066aa5f7b422ba003e26b3cae0 {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00418.WGS.N.hg38 C3L-00418 CCRCC WGS blood_normal CPT0002730002 a0658f29-2a4f-43c0-8d17-e351ea2f073f_gdc_realn.bam 83377414282 BAM harmonized CPTAC3 2cf61070-2be1-4d25-a4f8-df3b6c57533a f0b5dfc961874990c9f41d7a1dd11f9d {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00418.WGS.T C3L-00418 CCRCC WGS tumor CPT0006630009 CPT0006630009.WholeGenome.RP-1303.bam 71026184649 BAM aligned CPTAC3 dc49da0c-72ab-4bec-974d-eb5c9508b7ff 9e0cf4d14fd0cfcc25cf9e6ab4b7bc1c {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor"} -C3L-00418.WGS.T.hg38 C3L-00418 CCRCC WGS tumor CPT0006630009 1b9f819b-a488-4f4d-8b10-cd30e4ada90c_gdc_realn.bam 100303730473 BAM harmonized CPTAC3 a2dd065d-3f82-4931-a909-2fd96f0fbe58 791d79cc2ad20f37a23a311d46bfc5c0 {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor"} -C3L-00418.WXS.A C3L-00418 CCRCC WXS tissue_normal CPT0006730009 CPT0006730009.WholeExome.RP-1303.bam 35946467843 BAM aligned CPTAC3 a7f87611-4de5-46be-b938-2879ec0a4069 d300393bb6d347985d964cd4cfb928ae {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.WXS.A.hg38 C3L-00418 CCRCC WXS tissue_normal CPT0006730009 0637f25d-c54f-4f85-b3b5-4fcb7f1d2598_wxs_gdc_realn.bam 48630644987 BAM harmonized CPTAC3 b5ae8787-6022-4462-9451-bc8395c1d1f4 3659cfcc5a049864a32f81f7e3b2589c {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00418.WXS.N C3L-00418 CCRCC WXS blood_normal CPT0002730002 CPT0002730002.WholeExome.RP-1303.bam 23336023161 BAM aligned CPTAC3 71f44c7a-8e13-4b2f-9a09-fba9d94785d6 e156c1ae08116edd2c757010186145bd {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00418.WXS.N.hg38 C3L-00418 CCRCC WXS blood_normal CPT0002730002 a0658f29-2a4f-43c0-8d17-e351ea2f073f_gdc_realn.bam 31921602535 BAM harmonized CPTAC3 f04b336a-904d-4844-8737-4d84c04119c9 9936d92f0adc6c956b91d67027d537eb {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00418.WXS.T C3L-00418 CCRCC WXS tumor CPT0006630009 CPT0006630009.WholeExome.RP-1303.bam 23093054793 BAM aligned CPTAC3 15bb9d8b-89c1-419f-b615-426795582dfe b718df15f46c6995cc6789c0bb7bb274 {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor"} -C3L-00418.WXS.T.hg38 C3L-00418 CCRCC WXS tumor CPT0006630009 1b9f819b-a488-4f4d-8b10-cd30e4ada90c_gdc_realn.bam 31097433856 BAM harmonized CPTAC3 4a9f8a4a-599a-4584-8a3f-172e1e4f4f4d 16dc7885f18a7f8be77af21316a3582d {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor"} -C3L-00422.MethArray.Green.A C3L-00422 LUAD Methylation_Array tissue_normal CPT0082890009 203028200034_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8a1461f0-4350-4d39-a000-3a009059dbc6 538b5c0f202b233681a0528d6aaa44c4 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.MethArray.Green.T C3L-00422 LUAD Methylation_Array tumor CPT0082850010 202163530118_R07C01_Grn.idat 13676245 IDAT Green NA CPTAC3 09b68940-ba36-4a90-9cf9-eadad4f179ff e0eba61cb20e7f2e293140810ca6ff0e {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor"} -C3L-00422.MethArray.Red.A C3L-00422 LUAD Methylation_Array tissue_normal CPT0082890009 203028200034_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 c53623ca-84c7-4437-9272-1bd68ef0fb44 6d703444dd6fc0d34ee3aeee0dc4553f {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.MethArray.Red.T C3L-00422 LUAD Methylation_Array tumor CPT0082850010 202163530118_R07C01_Red.idat 13676245 IDAT Red NA CPTAC3 8e4fd03c-d0a4-4b2c-8fdf-9c001c2dbad7 7a808442af495b20aba2734b39dc7e8e {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor"} -C3L-00422.miRNA-Seq.A.hg38 C3L-00422 LUAD miRNA-Seq tissue_normal CPT0082890006 8e97f524-44aa-4722-b069-0cdd0c608c70_mirnaseq_gdc_realn.bam 283797324 BAM harmonized CPTAC3 3479fd06-8375-40e7-86da-06d5af82ff97 77b2fdcf583e083b0f888aa221489418 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.miRNA-Seq.S19_L001_R1.T C3L-00422 LUAD miRNA-Seq tumor CPT0082850007 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L001_R1_001.unaln.bam 223017597 BAM S19_L001_R1 unaligned CPTAC3 f912e4dd-307c-4378-9c06-55b9c5ca6eba 8cb1209531be0bb40090fa78d397054b {"aliquot_tag": "ALQ_e66acdef", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00422.miRNA-Seq.S5_L007_R1.A C3L-00422 LUAD miRNA-Seq tissue_normal CPT0082890006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L007_R1_001.unaln.bam 254320575 BAM S5_L007_R1 unaligned CPTAC3 f808d03a-f796-4a55-8754-c33b52d551f8 91279000cd33cf1236f119fa67b1da84 {"aliquot_tag": "ALQ_549d1078", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.miRNA-Seq.T.hg38 C3L-00422 LUAD miRNA-Seq tumor CPT0082850007 56141fbf-9f28-49f5-be3b-4b85cabcca1e_mirnaseq_gdc_realn.bam 248304381 BAM harmonized CPTAC3 78cb47f4-8e43-4cc9-a66b-ed24982c1af0 5211a43833c1fe9ea4fec5fd3c577d73 {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor"} -C3L-00422.RNA-Seq.chimeric.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.chimeric.gdc_realn.bam 106898647 BAM chimeric harmonized CPTAC3 41edd814-dab1-4bd4-a187-b0701664b52f 48f0b0373afd516ba9a7c8959eef66a5 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.RNA-Seq.chimeric.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.chimeric.gdc_realn.bam 51467745 BAM chimeric harmonized CPTAC3 696b9a53-6482-4e05-84e9-74312c0bcbfc 3d5933c901bc5d6c9c9a7925e7530ced {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor"} -C3L-00422.RNA-Seq.genomic.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.genomic.gdc_realn.bam 8494366100 BAM genomic harmonized CPTAC3 6d849088-933c-4df8-9c07-556555ace5d6 944db3dec650d2618ce701bc95f65b37 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.RNA-Seq.genomic.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.genomic.gdc_realn.bam 10117344163 BAM genomic harmonized CPTAC3 35c4a4ad-40de-4345-b26b-cfbccbca07ae 6da68742e0601d49268f9533a8edea87 {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor"} -C3L-00422.RNA-Seq.S12_L003_R1.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3939767531 FASTQ S12_L003_R1 unaligned CPTAC3 2e2c1c3d-c88d-4da0-831b-64c75634c028 0f020142ccc60cac81885eed3aceef62 {"aliquot_tag": "ALQ_e66acdef", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00422.RNA-Seq.S12_L003_R2.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4292587036 FASTQ S12_L003_R2 unaligned CPTAC3 ff0c14f2-d588-418c-aee7-cde1c2d0626d 895c75a3c93cf973581b6ede2d7a2b70 {"aliquot_tag": "ALQ_e66acdef", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00422.RNA-Seq.S14_L005_R1.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R1_001.fastq.gz 4141870363 FASTQ S14_L005_R1 unaligned CPTAC3 b30ea0f2-faf1-4078-b0cd-40ed56bb3a94 403b72634b293f4334654a163ac61931 {"aliquot_tag": "ALQ_549d1078", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.RNA-Seq.S14_L005_R2.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R2_001.fastq.gz 4602244724 FASTQ S14_L005_R2 unaligned CPTAC3 689d2a3b-e398-4784-99c8-313b41a8a86d ca7949e245de4ab1dc992694fa82100c {"aliquot_tag": "ALQ_549d1078", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.RNA-Seq.transcriptome.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.transcriptome.gdc_realn.bam 10540194402 BAM transcriptome harmonized CPTAC3 3553d147-84de-4d9b-a5b9-4f2ebacec1ea 377e4115ac2d81dd360b90194f3ffe74 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.RNA-Seq.transcriptome.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.transcriptome.gdc_realn.bam 10750414035 BAM transcriptome harmonized CPTAC3 3c0fef25-cd43-41b5-aeaa-9d4a10efdee0 6c38f046bd7e392d43c77f631addfa7f {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor"} -C3L-00422.WGS.A C3L-00422 LUAD WGS tissue_normal CPT0082890009 CPT0082890009.WholeGenome.RP-1303.bam 61601457533 BAM aligned CPTAC3 f421f40a-4209-4a54-b26a-e6f1c1cbe562 401c366c6e58188b1a4189376f5a56a5 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.WGS.A.hg38 C3L-00422 LUAD WGS tissue_normal CPT0082890009 1468d8d0-c4b4-4c00-b057-97b8d19a4bd8_wgs_gdc_realn.bam 90428630751 BAM harmonized CPTAC3 dbb6185c-c7a6-48ac-aae4-76f64052eae7 bf88cba96ec06138a4537df58f9f8c20 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.WGS.N C3L-00422 LUAD WGS blood_normal CPT0081740002 CPT0081740002.WholeGenome.RP-1303.bam 67954113413 BAM aligned CPTAC3 18acf0ad-1681-48f4-9431-9e6e83bde515 98a5b6aaa118aaf24b0d050fc8a6f6a1 {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal"} -C3L-00422.WGS.N.hg38 C3L-00422 LUAD WGS blood_normal CPT0081740002 37d21656-4deb-40ff-9aee-4f619a70bb4b_gdc_realn.bam 102785940242 BAM harmonized CPTAC3 844da3e5-7f5e-49be-843a-62ebc6fce4b5 e631912630e9681f0b4dffac0fe4e5b0 {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal"} -C3L-00422.WGS.T C3L-00422 LUAD WGS tumor CPT0082850010 CPT0082850010.WholeGenome.RP-1303.bam 66731324504 BAM aligned CPTAC3 99506e6a-6f6d-444e-ad3b-a91737d26500 0eb190d6a9cbb74fc90062411875f502 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor"} -C3L-00422.WGS.T.hg38 C3L-00422 LUAD WGS tumor CPT0082850010 d2779a54-6282-4c22-a689-d752fbdc3b21_gdc_realn.bam 100368722134 BAM harmonized CPTAC3 8ddc9c82-e2aa-46ca-b3cd-491c194219bb 4a76625a9ead3240861fa82cf6f68d40 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor"} -C3L-00422.WXS.A C3L-00422 LUAD WXS tissue_normal CPT0082890009 CPT0082890009.WholeExome.RP-1303.bam 40496744342 BAM aligned CPTAC3 845cfdff-a9b1-4ceb-bc45-0661a77acf6e 5d0e1f59665c1b6e28d7887f34c3bce9 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.WXS.A.hg38 C3L-00422 LUAD WXS tissue_normal CPT0082890009 1468d8d0-c4b4-4c00-b057-97b8d19a4bd8_wxs_gdc_realn.bam 54298231140 BAM harmonized CPTAC3 2a2e8292-90a0-494b-af3c-6b78153e25a1 415842ee3ab78315aef99a8828232a5a {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00422.WXS.N C3L-00422 LUAD WXS blood_normal CPT0081740002 CPT0081740002.WholeExome.RP-1303.bam 24830161891 BAM aligned CPTAC3 1d864cea-5532-43a4-bb3c-b945a23e1532 98f43531853e710a9b984a6375b22d31 {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal"} -C3L-00422.WXS.N.hg38 C3L-00422 LUAD WXS blood_normal CPT0081740002 37d21656-4deb-40ff-9aee-4f619a70bb4b_gdc_realn.bam 34558769145 BAM harmonized CPTAC3 79be3375-4849-4bb2-ac6e-f30cba74c8c2 c1d1d45351fb8d28f5d4cd098cd037ee {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal"} -C3L-00422.WXS.T C3L-00422 LUAD WXS tumor CPT0082850010 CPT0082850010.WholeExome.RP-1303.bam 25543519280 BAM aligned CPTAC3 62080a81-fdcd-4f02-9bf7-b58574406d09 6a1397f074bcb68b64a109a65be18478 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor"} -C3L-00422.WXS.T.hg38 C3L-00422 LUAD WXS tumor CPT0082850010 d2779a54-6282-4c22-a689-d752fbdc3b21_gdc_realn.bam 34835997820 BAM harmonized CPTAC3 191ab7f2-92dc-450a-8860-7510e5210f53 2db57b5fdd009e6e1687cd83dba3c201 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor"} -C3L-00444.MethArray.Green.A C3L-00444 LUAD Methylation_Array tissue_normal CPT0130570006 203219650202_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c382b116-03f4-492c-ab44-96dbb8a83903 5f8f892ccceeaf01513010b1221ebf1e {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.MethArray.Green.T C3L-00444 LUAD Methylation_Array tumor CPT0130600006 203219640172_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ad4f9d96-a87c-4da2-bd1f-203cfaa4885e be1475635d47db2aeae0b95077fdf526 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor"} -C3L-00444.MethArray.Red.A C3L-00444 LUAD Methylation_Array tissue_normal CPT0130570006 203219650202_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 db816a66-4d33-4bf4-9a91-8a4af36bd199 f0768ce2a3f5a27e1d20bcea6422663d {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.MethArray.Red.T C3L-00444 LUAD Methylation_Array tumor CPT0130600006 203219640172_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 71085014-704a-4d62-b1ac-e39d87be7e58 aa8e8e2f4905c26f8be46ba2857ae224 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor"} -C3L-00444.miRNA-Seq.A.hg38 C3L-00444 LUAD miRNA-Seq tissue_normal CPT0130570009 ffab4bae-4ef2-4832-a194-52bef09b380c_mirnaseq_gdc_realn.bam 282031841 BAM harmonized CPTAC3 302b6318-7bfb-4c09-a0d3-a3833790c81c 8db076b9041f6893dd5e0ec2d5883709 {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.miRNA-Seq.S15_L004_R1.A C3L-00444 LUAD miRNA-Seq tissue_normal CPT0130570009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L004_R1_001.unaln.bam 252797529 BAM S15_L004_R1 unaligned CPTAC3 7cb8b27a-773a-4ddd-905c-619a99f07274 f592010eff2c12bb8e350f3b1e94b3c9 {"aliquot_tag": "ALQ_1a02b96a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.miRNA-Seq.S37_L007_R1.T C3L-00444 LUAD miRNA-Seq tumor CPT0130600009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L007_R1_001.unaln.bam 238012107 BAM S37_L007_R1 unaligned CPTAC3 4b5495c1-01a4-4503-a68d-949f4832688e ef6d9d995ec3ad1d02b92b7ec71fe3a9 {"aliquot_tag": "ALQ_2eb617d4", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00444.miRNA-Seq.T.hg38 C3L-00444 LUAD miRNA-Seq tumor CPT0130600009 3bef9438-f83c-451b-be66-749023f11e7a_mirnaseq_gdc_realn.bam 263817728 BAM harmonized CPTAC3 84c65ec5-a8bd-417b-ad23-9f456cad5b34 d6260a651892eee55ea6ed0da96e9e41 {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor"} -C3L-00444.RNA-Seq.chimeric.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.chimeric.gdc_realn.bam 33747280 BAM chimeric harmonized CPTAC3 39ce72a0-2e18-46c6-a823-50e5a6bf2a03 2bf9f160fa2941fa07b40c6bc4c6dccf {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.RNA-Seq.chimeric.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.chimeric.gdc_realn.bam 46533687 BAM chimeric harmonized CPTAC3 453997eb-0ad1-45c5-84d3-fce40cb7c22c c82c1c2f291bf2753e93d8967193fc14 {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor"} -C3L-00444.RNA-Seq.genomic.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.genomic.gdc_realn.bam 7765672002 BAM genomic harmonized CPTAC3 36b34e03-8d9f-4bc3-bbac-04a741ad8073 561be81362e51de649074c5dde1b65a2 {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.RNA-Seq.genomic.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.genomic.gdc_realn.bam 9300700164 BAM genomic harmonized CPTAC3 0493f327-f60c-4002-ab36-2a1b4ffbcc92 cfea4be5f51aa732bc32ac827950ea0a {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor"} -C3L-00444.RNA-Seq.S13_L004_R1.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R1_001.fastq.gz 4036401107 FASTQ S13_L004_R1 unaligned CPTAC3 b6490610-1ed9-4419-ba29-bf212c549bf2 a03be3480e50456a3dbf1334031e5383 {"aliquot_tag": "ALQ_2eb617d4", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00444.RNA-Seq.S13_L004_R2.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R2_001.fastq.gz 4421338294 FASTQ S13_L004_R2 unaligned CPTAC3 1ac9bf23-6370-44fd-8861-57ccb30bb6d0 d63287897bdb5f08c7454ee02f12670c {"aliquot_tag": "ALQ_2eb617d4", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00444.RNA-Seq.S6_L002_R1.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R1_001.fastq.gz 3670326581 FASTQ S6_L002_R1 unaligned CPTAC3 331f7d00-b768-43d2-98ed-aa61ed897322 48eeecab45b4bf293ab6c531e71ba33d {"aliquot_tag": "ALQ_1a02b96a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.RNA-Seq.S6_L002_R2.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R2_001.fastq.gz 3948621402 FASTQ S6_L002_R2 unaligned CPTAC3 155744ac-8c8c-4c44-bf98-dad598363c9e 204626595559b98a908c723dc7e05a2f {"aliquot_tag": "ALQ_1a02b96a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.RNA-Seq.transcriptome.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.transcriptome.gdc_realn.bam 9595016465 BAM transcriptome harmonized CPTAC3 0bf65306-7851-4d30-a143-1aebd393f317 e9679239832bb956a159f6f9c98c7a3d {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.RNA-Seq.transcriptome.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.transcriptome.gdc_realn.bam 8968804196 BAM transcriptome harmonized CPTAC3 97224e73-39e0-40a7-88c3-33351cbcf878 ed460c9858e8e340962eac9be8f6859a {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor"} -C3L-00444.WGS.A C3L-00444 LUAD WGS tissue_normal CPT0130570006 CPT0130570006.WholeGenome.RP-1303.bam 55210446209 BAM aligned CPTAC3 79b224e0-a014-4040-828c-68b58c672ce2 353503fe828c36b6fce8873891facd19 {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.WGS.A.hg38 C3L-00444 LUAD WGS tissue_normal CPT0130570006 207dfc06-0684-4fb5-b41e-b086e29ed031_wgs_gdc_realn.bam 80353184323 BAM harmonized CPTAC3 52849fba-9ad9-4809-b5e3-7ecd13c8fe47 4ef1bb60cacdc2aec936d630613ea62d {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.WGS.N C3L-00444 LUAD WGS blood_normal CPT0130670001 CPT0130670001.WholeGenome.RP-1303.bam 61867552537 BAM aligned CPTAC3 f23e66f5-b0e5-401e-aa9a-bca9890eb875 a2a140affea4b96187f0608077681adc {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00444.WGS.N.hg38 C3L-00444 LUAD WGS blood_normal CPT0130670001 f18e1637-2c6e-4970-a4e5-bcf58991b13d_wgs_gdc_realn.bam 89460173970 BAM harmonized CPTAC3 871ed22a-9e21-48ce-a4a1-08eff04a2069 21d30f1d098eeda000fd1facfa24f401 {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00444.WGS.T C3L-00444 LUAD WGS tumor CPT0130600006 CPT0130600006.WholeGenome.RP-1303.bam 70129150399 BAM aligned CPTAC3 94dcc54c-a55a-4ac6-aad9-93811c620e9a efed3890a2e66e78df4abfc08da65c33 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor"} -C3L-00444.WGS.T.hg38 C3L-00444 LUAD WGS tumor CPT0130600006 3dbbf0d2-e67d-4401-8199-a2377fac5565_wgs_gdc_realn.bam 103668090021 BAM harmonized CPTAC3 7915db03-94ac-4cc3-85f2-b44fe4ed0296 4a5c6d240b7b030417d58c0b1120c548 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor"} -C3L-00444.WXS.A C3L-00444 LUAD WXS tissue_normal CPT0130570006 CPT0130570006.WholeExome.RP-1303.bam 23816901953 BAM aligned CPTAC3 0243e0ab-85b1-4bb8-a3dc-35e96ae1807f 96b2e88f9d5550a95cc26241de10a2e5 {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.WXS.A.hg38 C3L-00444 LUAD WXS tissue_normal CPT0130570006 207dfc06-0684-4fb5-b41e-b086e29ed031_wxs_gdc_realn.bam 33144843450 BAM harmonized CPTAC3 efaeff8a-b42e-49fa-8f89-a847b4cb67d5 1978074bb8fdba88da9e4a8b0bc1ecb8 {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00444.WXS.N C3L-00444 LUAD WXS blood_normal CPT0130670001 CPT0130670001.WholeExome.RP-1303.bam 22960006195 BAM aligned CPTAC3 8d5a6857-d8d5-4593-bd35-b53cf3f3ed9f b6fb0ee1df5224de9b41468c73fb67cd {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00444.WXS.N.hg38 C3L-00444 LUAD WXS blood_normal CPT0130670001 f18e1637-2c6e-4970-a4e5-bcf58991b13d_wxs_gdc_realn.bam 31263724202 BAM harmonized CPTAC3 bdfb9339-ba92-4f83-bad7-80168a77a95e 9d3b6a5e365f335fcda24b38a6c2c3f9 {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00444.WXS.T C3L-00444 LUAD WXS tumor CPT0130600006 CPT0130600006.WholeExome.RP-1303.bam 24146657501 BAM aligned CPTAC3 2af5bcfa-9435-436c-89bd-39abf13cd815 41a02683d14cb8ebc85d75d509287466 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor"} -C3L-00444.WXS.T.hg38 C3L-00444 LUAD WXS tumor CPT0130600006 3dbbf0d2-e67d-4401-8199-a2377fac5565_wxs_gdc_realn.bam 32275079728 BAM harmonized CPTAC3 c71d112f-c054-4d0d-9081-9d9e664f18ee d9db4b25ca6d08cd5f1cdc19dd5c2b39 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor"} -C3L-00445.MethArray.Green.A C3L-00445 LSCC Methylation_Array tissue_normal CPT0130440007 203271750057_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 dbaf6739-bc9a-4c5c-bd6c-22d4505be790 77e76588c76b544152a690bdf78f37a8 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.MethArray.Green.T C3L-00445 LSCC Methylation_Array tumor CPT0130410009 203028200100_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c0bd6545-f450-4a73-88a7-1cb4a5e624ca f6a541ac2ef7934ad4a948f5b2feb32e {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor"} -C3L-00445.MethArray.Red.A C3L-00445 LSCC Methylation_Array tissue_normal CPT0130440007 203271750057_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 dbe747d9-2088-43d2-838c-b068505cb043 a5a81cff118a0632273972ab0b94bc23 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.MethArray.Red.T C3L-00445 LSCC Methylation_Array tumor CPT0130410009 203028200100_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 2b8e22f9-5a5e-4760-80c3-3bcc5d03084e d518e2ea09cb567c1f60579dd5f40a26 {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor"} -C3L-00445.miRNA-Seq.A.hg38 C3L-00445 LSCC miRNA-Seq tissue_normal CPT0130440010 f6a28d82-7623-4ef1-ace8-1b8fdb69ad09_mirnaseq_gdc_realn.bam 202593807 BAM harmonized CPTAC3 4964b500-bb90-4561-8540-4e4c20a82571 2dc28ef20c7a9aa777bfd6b2db3b11e0 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.miRNA-Seq.S19_L001_R1.T C3L-00445 LSCC miRNA-Seq tumor CPT0130410006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGAAA_S19_L001_R1_001.unaln.bam 246908244 BAM S19_L001_R1 unaligned CPTAC3 97f19311-0706-4ad2-977d-6bb44f259df6 c63597bea4e520905545504b940510bf {"aliquot_tag": "ALQ_cea182fe", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00445.miRNA-Seq.S26_L002_R1.A C3L-00445 LSCC miRNA-Seq tissue_normal CPT0130440010 181219_UNC31-K00269_0173_BHYGJJBBXX_ATTCCT_S26_L002_R1_001.unaln.bam 180559533 BAM S26_L002_R1 unaligned CPTAC3 bb5c491d-d7a2-4f5f-9dfc-381543bc0350 aad13b0b4a28811d255098ebb06d45d9 {"aliquot_tag": "ALQ_f63999fa", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.miRNA-Seq.T.hg38 C3L-00445 LSCC miRNA-Seq tumor CPT0130410006 525aa0a6-4323-442d-bf53-fd0458e5c174_mirnaseq_gdc_realn.bam 277882210 BAM harmonized CPTAC3 3ef8a762-8800-432f-aeb8-92988f49004d c2be7af2352f95f2aa8eaf72c3b7e1a1 {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor"} -C3L-00445.RNA-Seq.chimeric.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.chimeric.gdc_realn.bam 28371098 BAM chimeric harmonized CPTAC3 73fb63cd-84f8-4383-ae88-fe56f730b05e 778b92ebf83c5d74bb823ca022fb4169 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.RNA-Seq.chimeric.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.chimeric.gdc_realn.bam 27998406 BAM chimeric harmonized CPTAC3 5aa38bbf-064c-4b7c-adfb-dc62624315dc 69dc44b3e7995e1d6d8b1a25cd40175d {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor"} -C3L-00445.RNA-Seq.genomic.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.genomic.gdc_realn.bam 8828821078 BAM genomic harmonized CPTAC3 c9927615-1f3e-4fdd-b6ee-1856de5dc4be 6a4cfe98e93a51c5077c142a4426b634 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.RNA-Seq.genomic.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.genomic.gdc_realn.bam 8054442925 BAM genomic harmonized CPTAC3 a1c9522f-1281-40dc-a1a9-60c74dcebe79 5e6ecaed670b6779051b3dafa51e7600 {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor"} -C3L-00445.RNA-Seq.S10_L003_R1.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3969350594 FASTQ S10_L003_R1 unaligned CPTAC3 adcf873e-8068-482d-86f6-c45269581947 6e01d754d63841208b1cad9bfc07630e {"aliquot_tag": "ALQ_f63999fa", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.RNA-Seq.S10_L003_R2.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 4181183944 FASTQ S10_L003_R2 unaligned CPTAC3 a0e1915a-e37d-43c9-9057-a6ceb942130e 982c8009c6024ea1752513ae9c365b73 {"aliquot_tag": "ALQ_f63999fa", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.RNA-Seq.S1_L001_R1.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 3582948269 FASTQ S1_L001_R1 unaligned CPTAC3 fe878db6-3333-4bca-9757-acca87223d7d b533a94727d3bf9727b8415e56f72159 {"aliquot_tag": "ALQ_cea182fe", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00445.RNA-Seq.S1_L001_R2.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 3993491560 FASTQ S1_L001_R2 unaligned CPTAC3 ce3eb190-137f-44cc-8ee9-5427aa689226 23c7f0c5555ef4c90acc7948756e62e1 {"aliquot_tag": "ALQ_cea182fe", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00445.RNA-Seq.transcriptome.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.transcriptome.gdc_realn.bam 11810084243 BAM transcriptome harmonized CPTAC3 80ee4b0b-7df0-4556-b4f0-26c5afc6beca f972682fe6d259274cff556af2589650 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.RNA-Seq.transcriptome.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.transcriptome.gdc_realn.bam 9801766325 BAM transcriptome harmonized CPTAC3 82b187bc-93d5-4696-8b40-75fe2f72cd8b c9fe25709f872b963e24408a6beba3b9 {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor"} -C3L-00445.WGS.A C3L-00445 LSCC WGS tissue_normal CPT0130440007 CPT0130440007.WholeGenome.RP-1303.bam 53123947589 BAM aligned CPTAC3 fc9c7dd2-24a7-4dc1-bd5c-4af36ee8fffd e5cc1aacc23be319f5e0a0327e653e7e {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.WGS.A.hg38 C3L-00445 LSCC WGS tissue_normal CPT0130440007 8e464f1c-a960-4810-a984-75d62f2086e8_wgs_gdc_realn.bam 77751126157 BAM harmonized CPTAC3 4a6a8d58-bc2b-4629-a6d5-a003bb1f77b8 b7ebebd1e41253f1bee3bb781230bd20 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.WGS.N C3L-00445 LSCC WGS blood_normal CPT0130530002 CPT0130530002.WholeGenome.RP-1303.bam 49804639138 BAM aligned CPTAC3 ba34a361-b5b3-4a95-a4ed-40c4eb0282da 67f11d0992e25b371d1ab994e74c825d {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal"} -C3L-00445.WGS.N.hg38 C3L-00445 LSCC WGS blood_normal CPT0130530002 671050aa-def8-4a5c-9101-f9e53d9e8fe4_wgs_gdc_realn.bam 72801510671 BAM harmonized CPTAC3 446f4c05-4489-4fcb-bdae-f7111851ad05 e4f881ebca6a5a26c469012a6a278545 {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal"} -C3L-00445.WGS.T C3L-00445 LSCC WGS tumor CPT0130410009 CPT0130410009.WholeGenome.RP-1303.bam 62582941204 BAM aligned CPTAC3 fc39d74e-4ef9-4e94-86af-ea6ebbc50c5d 8528561a37daf7fd5405f8c0ddbeb4da {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor"} -C3L-00445.WGS.T.hg38 C3L-00445 LSCC WGS tumor CPT0130410009 0a402562-24c6-4a9f-af18-9c5ac968f866_wgs_gdc_realn.bam 89533514743 BAM harmonized CPTAC3 f8228dc0-a129-4009-9833-236447a5e66d 83925aa4fda6dd25365449beeeb699c6 {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor"} -C3L-00445.WXS.A C3L-00445 LSCC WXS tissue_normal CPT0130440007 CPT0130440007.WholeExome.RP-1303.bam 24712302961 BAM aligned CPTAC3 a7262133-009d-487b-a3cb-5bc3f60fbb3d a50d0b5b45703ea3f619b8964b16ac3d {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.WXS.A.hg38 C3L-00445 LSCC WXS tissue_normal CPT0130440007 8e464f1c-a960-4810-a984-75d62f2086e8_wxs_gdc_realn.bam 33747938560 BAM harmonized CPTAC3 a2c16597-0c0a-4069-8386-d055bd2ad43d ff1f111a595f02ec5cd57904d369f9f4 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00445.WXS.N C3L-00445 LSCC WXS blood_normal CPT0130530002 CPT0130530002.WholeExome.RP-1303.bam 25736379859 BAM aligned CPTAC3 f4c454af-5ee4-4291-b0f6-5daa7241c94f 16dca8696e0dca7a52899ab03de96b92 {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal"} -C3L-00445.WXS.N.hg38 C3L-00445 LSCC WXS blood_normal CPT0130530002 671050aa-def8-4a5c-9101-f9e53d9e8fe4_wxs_gdc_realn.bam 35167405100 BAM harmonized CPTAC3 c84accfb-8a6a-4727-9b19-3ed0e410622e 93a1320f4d8e71e5d28f9948ee883b45 {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal"} -C3L-00445.WXS.T C3L-00445 LSCC WXS tumor CPT0130410009 CPT0130410009.WholeExome.RP-1303.bam 27750445222 BAM aligned CPTAC3 0253b78c-0d24-498d-a701-38def1b50376 dec618b353ae6a14cce8a060a07368ac {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor"} -C3L-00445.WXS.T.hg38 C3L-00445 LSCC WXS tumor CPT0130410009 0a402562-24c6-4a9f-af18-9c5ac968f866_wxs_gdc_realn.bam 38846497772 BAM harmonized CPTAC3 bda0039c-16cd-49a8-82de-43a50339a47d c62a7aaa4560f982ab828e342310d338 {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor"} -C3L-00446.MethArray.Green.A C3L-00446 LUAD Methylation_Array tissue_normal CPT0129790006 203028200100_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6139b38e-c8e8-456f-9069-29edcb361594 c3f11b993832c320abd093e847d7f7b4 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.MethArray.Green.T C3L-00446 LUAD Methylation_Array tumor CPT0129030006 203220070082_R04C01_Grn.idat 13676225 IDAT Green NA CPTAC3 bc616636-7ef6-4f1c-ad2e-aff4b6636da9 80201cd8a70df0a65225e2ea62d248a0 {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor"} -C3L-00446.MethArray.Red.A C3L-00446 LUAD Methylation_Array tissue_normal CPT0129790006 203028200100_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 3e24dc21-7e4b-425a-b064-cbfb53648809 88ad4f1bcbf3691ce940dba5e45a31fd {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.MethArray.Red.T C3L-00446 LUAD Methylation_Array tumor CPT0129030006 203220070082_R04C01_Red.idat 13676225 IDAT Red NA CPTAC3 c6d9c570-5f67-4c1c-ae28-f70a8eec3a0b b6044131ad8952ed81196b65b73e083d {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor"} -C3L-00446.miRNA-Seq.A.hg38 C3L-00446 LUAD miRNA-Seq tissue_normal CPT0129790009 39f8d9cf-6a27-4a7b-8186-3d3cde93f184_mirnaseq_gdc_realn.bam 251490691 BAM harmonized CPTAC3 f137a364-3997-4b3a-91d9-9856502775c1 5f0f7a44a5477c298d905e1dd062591d {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.miRNA-Seq.S18_L006_R1.T C3L-00446 LUAD miRNA-Seq tumor CPT0129030009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L006_R1_001.unaln.bam 173612857 BAM S18_L006_R1 unaligned CPTAC3 68497aea-6170-4e14-9f69-ba138758b38f 71441cd1201245d8f225f42b30de5ffb {"aliquot_tag": "ALQ_e67dcb54", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00446.miRNA-Seq.S5_L008_R1.A C3L-00446 LUAD miRNA-Seq tissue_normal CPT0129790009 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L008_R1_001.unaln.bam 231612895 BAM S5_L008_R1 unaligned CPTAC3 1c8d6734-b092-40d4-b8ac-3c2eacbf7f13 ded1e74f9f37cf58136e85c60bb1039f {"aliquot_tag": "ALQ_b1c8e34d", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.miRNA-Seq.T.hg38 C3L-00446 LUAD miRNA-Seq tumor CPT0129030009 3d4e48fb-e1d8-4924-807e-e21825aab250_mirnaseq_gdc_realn.bam 190825628 BAM harmonized CPTAC3 5acc5aed-a59b-4989-b650-3a27d9560154 8156e6fbb7749d97ebfd08d783265a41 {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor"} -C3L-00446.RNA-Seq.chimeric.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.chimeric.gdc_realn.bam 398598616 BAM chimeric harmonized CPTAC3 5bc5b475-e014-40de-b403-3e8c9f711fd0 c80539fba3adcdd1ca5f6e611d18b81a {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.RNA-Seq.chimeric.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.chimeric.gdc_realn.bam 53943736 BAM chimeric harmonized CPTAC3 fbe1df05-8c7a-446b-be06-0df7fd0b3054 166f576843c6b8c6b94d545331631885 {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor"} -C3L-00446.RNA-Seq.genomic.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.genomic.gdc_realn.bam 8962548599 BAM genomic harmonized CPTAC3 8ea927fc-f5fb-4264-b33e-12eb0a193dff 431c3b0c45b658dc716097f691a9ef9e {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.RNA-Seq.genomic.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.genomic.gdc_realn.bam 11445245281 BAM genomic harmonized CPTAC3 565bb203-0fcb-42e6-bcb9-d9986ee8745b 886bcf45c04dffb6ffadc5eb17cb80bb {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor"} -C3L-00446.RNA-Seq.S20_L006_R1.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R1_001.fastq.gz 5082749836 FASTQ S20_L006_R1 unaligned CPTAC3 6dc12a76-42da-4bb6-a37c-e7b2600633f0 116ffc92ade2da42358c167c56532627 {"aliquot_tag": "ALQ_e67dcb54", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00446.RNA-Seq.S20_L006_R2.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R2_001.fastq.gz 5819146639 FASTQ S20_L006_R2 unaligned CPTAC3 7c60aa89-72b4-4919-b828-99f4a5a033e2 1f43bebe62f95497f6d1c268482b6473 {"aliquot_tag": "ALQ_e67dcb54", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00446.RNA-Seq.S21_L007_R1.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R1_001.fastq.gz 4029820827 FASTQ S21_L007_R1 unaligned CPTAC3 d5219752-cb3f-4079-bef2-b7e0401b1cb9 d929713ddcafdc9a16763fb42dec783d {"aliquot_tag": "ALQ_b1c8e34d", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.RNA-Seq.S21_L007_R2.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R2_001.fastq.gz 4205733924 FASTQ S21_L007_R2 unaligned CPTAC3 e720a590-dbd9-4648-9c4c-80155cfecff4 4378f03865d8fb92cd7812b4a2f458c3 {"aliquot_tag": "ALQ_b1c8e34d", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.RNA-Seq.transcriptome.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.transcriptome.gdc_realn.bam 8836701859 BAM transcriptome harmonized CPTAC3 7e01347b-f720-4ba6-8bc4-d25562f6bebd ea783a8213a35f877ece07ca323c5047 {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.RNA-Seq.transcriptome.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.transcriptome.gdc_realn.bam 12910183351 BAM transcriptome harmonized CPTAC3 8ae9c2c3-9bbf-4533-b2f6-a84f6c48b311 2540fab33e80bfe10d1544c3db8a1181 {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor"} -C3L-00446.WGS.A C3L-00446 LUAD WGS tissue_normal CPT0129790006 CPT0129790006.WholeGenome.RP-1303.bam 57633000886 BAM aligned CPTAC3 6473b6f8-f5a0-42ef-9443-54414c9b7daf 7e70541d01e8444e758112da4fa60211 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.WGS.A.hg38 C3L-00446 LUAD WGS tissue_normal CPT0129790006 75048cfb-71f1-4fdf-b78c-aa86369f3619_wgs_gdc_realn.bam 84118607107 BAM harmonized CPTAC3 47fd5108-15bb-4eeb-9810-6a7a9a4ff02b 45eed63bc3a86879422a1a0db5cb4839 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.WGS.N C3L-00446 LUAD WGS blood_normal CPT0129890002 CPT0129890002.WholeGenome.RP-1303.bam 54829670427 BAM aligned CPTAC3 9b2acfe7-2ce3-452a-a5b2-95a5e3b1d546 c894d5cb1570601c74daabd4c7f7be11 {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal"} -C3L-00446.WGS.N.hg38 C3L-00446 LUAD WGS blood_normal CPT0129890002 99f55744-433e-48b2-bec7-34b3d3f1b297_wgs_gdc_realn.bam 80588309709 BAM harmonized CPTAC3 7560b484-dee8-4f0e-ac15-5f46d77cb5eb 104fbd2edf9545463779411827782ba0 {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal"} -C3L-00446.WGS.T C3L-00446 LUAD WGS tumor CPT0129030006 CPT0129030006.WholeGenome.RP-1303.bam 55539018349 BAM aligned CPTAC3 7d7605f9-40ab-4f07-902a-7a9b5bd3b66b 14cc8fff98e1ce1e72cadb7fe41d5092 {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor"} -C3L-00446.WGS.T.hg38 C3L-00446 LUAD WGS tumor CPT0129030006 8817b640-f385-4838-a90d-56e2deed4b68_wgs_gdc_realn.bam 80390375511 BAM harmonized CPTAC3 3dd2e673-ebc0-4df1-b382-8c0c45641738 c30a83c95c21671b88731d06bb59366e {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor"} -C3L-00446.WXS.A C3L-00446 LUAD WXS tissue_normal CPT0129790006 CPT0129790006.WholeExome.RP-1303.bam 38663792709 BAM aligned CPTAC3 cd1854e9-67ae-4cd8-8ea1-a5f0a822c7db 9045df6cfcd657d2d9ba4352a3d41f67 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.WXS.A.hg38 C3L-00446 LUAD WXS tissue_normal CPT0129790006 75048cfb-71f1-4fdf-b78c-aa86369f3619_wxs_gdc_realn.bam 53506884084 BAM harmonized CPTAC3 a34d7335-657d-47b2-b59a-7e9458bd2945 0c13e4af35a9e778184751b7c5ab4cf1 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00446.WXS.N C3L-00446 LUAD WXS blood_normal CPT0129890002 CPT0129890002.WholeExome.RP-1303.bam 26236915513 BAM aligned CPTAC3 787b1233-1426-4028-9577-d0e076487f22 24db61d3ba5c81e18dd342644882a007 {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal"} -C3L-00446.WXS.N.hg38 C3L-00446 LUAD WXS blood_normal CPT0129890002 99f55744-433e-48b2-bec7-34b3d3f1b297_wxs_gdc_realn.bam 36158628285 BAM harmonized CPTAC3 04947b5f-dc66-4460-bff9-43d7e27fb097 697856d74e9fa6653b15fcaf4a8df35f {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal"} -C3L-00446.WXS.T C3L-00446 LUAD WXS tumor CPT0129030006 CPT0129030006.WholeExome.RP-1303.bam 27949123385 BAM aligned CPTAC3 7cca201c-ce6d-4dc5-8da8-64fe394a3ba2 702d455475995e0a83fb581ea25c3dfa {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor"} -C3L-00446.WXS.T.hg38 C3L-00446 LUAD WXS tumor CPT0129030006 8817b640-f385-4838-a90d-56e2deed4b68_wxs_gdc_realn.bam 38601455048 BAM harmonized CPTAC3 19ea98c8-3932-4c17-9fe9-c2db50c1b277 ecd35252812d7968fe62b65a910aaef8 {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor"} -C3L-00447.ANN_25c4839b.MethArray.Green.T C3L-00447 CCRCC Methylation_Array tumor CPT0006900009 202163550072_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 90dcff0b-8ea6-48cc-aa80-468c8d008295 308280c02bf7993326e61bafc9eae6f2 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00447.ANN_25c4839b.MethArray.Red.T C3L-00447 CCRCC Methylation_Array tumor CPT0006900009 202163550072_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 662536f1-4b03-4d05-99ed-76413c86db69 64cdbd550bf1b895fe5416d6f0fa1eaa {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00447.ANN_25c4839b.WGS.T C3L-00447 CCRCC WGS tumor CPT0006900009 CPT0006900009.WholeGenome.RP-1303.bam 64589818148 BAM aligned CPTAC3 08889ecf-1144-45f9-a2b2-788eab1878c0 06bd989cb3640479da2046820e88a3dc {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00447.ANN_25c4839b.WGS.T.hg38 C3L-00447 CCRCC WGS tumor CPT0006900009 51b9c76b-1f15-4493-9047-0d661fe133b6_gdc_realn.bam 94012938866 BAM harmonized CPTAC3 8f2765e2-9bb1-4389-9c21-4b2603e7d778 d671af92d4d28b7bfa2b96c08ca7a329 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00447.ANN_25c4839b.WXS.T C3L-00447 CCRCC WXS tumor CPT0006900009 CPT0006900009.WholeExome.RP-1303.bam 22912254096 BAM aligned CPTAC3 c564ce17-728a-45f0-afde-06061e1aff45 921b4613f831cbe80ee7b6e422571107 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00447.ANN_25c4839b.WXS.T.hg38 C3L-00447 CCRCC WXS tumor CPT0006900009 51b9c76b-1f15-4493-9047-0d661fe133b6_gdc_realn.bam 31067852101 BAM harmonized CPTAC3 532f1bc2-2f90-4838-a000-aa75969e323c 099a35bda961bcd2947e0c8ebbe02e26 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_18a4aa2b.MethArray.Green.T C3L-00447 CCRCC Methylation_Array tumor CPT0006910009 204367490082_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a0b2c3d0-ec99-445c-a66f-8423a4ffd0b5 cc000eca2a14d0b0b7f7536fdd255856 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_18a4aa2b.MethArray.Red.T C3L-00447 CCRCC Methylation_Array tumor CPT0006910009 204367490082_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 7fa1fdda-b818-4891-8ca1-71d28278bd2e 176c319dbca909c9474598976f35a6a1 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_18a4aa2b.WGS.T C3L-00447 CCRCC WGS tumor CPT0006910009 CPT0006910009.WholeGenome.RP-2158.bam 30525517897 BAM aligned CPTAC3 ff1095f4-7715-4739-9b27-be289c05e2a4 019b40ca01ece47931ea36e3c25b18f6 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_18a4aa2b.WGS.T.hg38 C3L-00447 CCRCC WGS tumor CPT0006910009 b83ac703-865f-4ab2-bc70-64b2aa2b0dc3_wgs_gdc_realn.bam 91857748028 BAM harmonized CPTAC3 cd3091b7-a8c0-4c4d-af7a-59ca029ed061 a6c040d4f602078628ecba3af90ef3b9 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_18a4aa2b.WXS.T C3L-00447 CCRCC WXS tumor CPT0006910009 CPT0006910009.WholeExome.RP-1303.bam 49548117424 BAM aligned CPTAC3 edad4172-5c85-4a93-aaff-46201aa1735e c2aaa9d00c14fe64c932937e04b8dde4 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_18a4aa2b.WXS.T.hg38 C3L-00447 CCRCC WXS tumor CPT0006910009 b83ac703-865f-4ab2-bc70-64b2aa2b0dc3_wxs_gdc_realn.bam 68337491521 BAM harmonized CPTAC3 8aa9a5f4-4769-4f4e-8e32-d7d1f634d01b c84d47c7e5939815b822fc64d561b874 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_61d8a59e.MethArray.Green.T C3L-00447 CCRCC Methylation_Array tumor CPT0006860009 204367490151_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 76e867b5-95e0-4f06-bca4-a0822ba07174 cf7b6a2ce7f5ff10a88360ab3c1c3e54 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_61d8a59e.MethArray.Red.T C3L-00447 CCRCC Methylation_Array tumor CPT0006860009 204367490151_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 bcc90441-619b-452f-8e88-ee119dc5b378 080ebfbd7a647f0df5d67366635d2a2d {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_61d8a59e.WGS.T C3L-00447 CCRCC WGS tumor CPT0006860009 CPT0006860009.WholeGenome.RP-2158.bam 27008577940 BAM aligned CPTAC3 21a01e12-7b34-467c-8381-00b68b22df8c 7a4028450bcd03fb9590639f9173eb82 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_61d8a59e.WGS.T.hg38 C3L-00447 CCRCC WGS tumor CPT0006860009 8905f8f8-c66d-4893-ad4f-a158b3023f20_wgs_gdc_realn.bam 77143257414 BAM harmonized CPTAC3 44bb34eb-03ab-461f-96d7-dfd80c5bb507 26502373b87217369574bda182bdc58a {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_61d8a59e.WXS.T C3L-00447 CCRCC WXS tumor CPT0006860009 CPT0006860009.WholeExome.RP-1303.bam 20997947433 BAM aligned CPTAC3 83b7c6d0-5703-4399-adc1-75ccebd187df cc1517746f4be8c7a772721c37296d09 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_61d8a59e.WXS.T.hg38 C3L-00447 CCRCC WXS tumor CPT0006860009 8905f8f8-c66d-4893-ad4f-a158b3023f20_wxs_gdc_realn.bam 28971883153 BAM harmonized CPTAC3 9d5950fd-fe30-4c96-bbc9-e0bd350a3698 fd16b8d99a6ee0cf6bbca673e26aeee5 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_881bb7ba.miRNA-Seq.S25_L002_R1.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006910006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACGAT_S25_L002_R1_001.unaln.bam 459652727 BAM S25_L002_R1 unaligned CPTAC3 edf69397-2751-4ef7-8150-4090301046e5 1f3ffabc1bbb61858e3ce0b4dc1dbe7f {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_881bb7ba.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006910006 4a4937df-521c-4d92-8bef-ed029f4f5f4a_mirnaseq_gdc_realn.bam 502929455 BAM harmonized CPTAC3 c678e232-a714-4b57-bfd1-1247329c8a8f dd2f98545ca0347d61d5487451cf6b10 {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_881bb7ba.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.chimeric.gdc_realn.bam 74371764 BAM chimeric harmonized CPTAC3 e7ad69ec-c0aa-4312-9b5a-57e99579d4fc d0fc1162bff5ab8e1eea5bb88a97d18c {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_881bb7ba.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.genomic.gdc_realn.bam 8344558021 BAM genomic harmonized CPTAC3 76792916-3f4e-457b-a37d-cf8cdafcbb81 d079814d7d83b124d280167183855e6e {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_881bb7ba.RNA-Seq.S7_L002_R1.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3933557689 FASTQ S7_L002_R1 unaligned CPTAC3 e11e8977-2f36-41fa-89b5-ce5d4071ef1c 30c85b9af3d32f90ea0b640f216a0ca9 {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_881bb7ba.RNA-Seq.S7_L002_R2.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4568321600 FASTQ S7_L002_R2 unaligned CPTAC3 0e933d02-8f5a-4490-af96-56d3d88d7c2f dee9ca9a943eeeca1fea3f1f0517f8bd {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_881bb7ba.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.transcriptome.gdc_realn.bam 11237389246 BAM transcriptome harmonized CPTAC3 2856e914-5a6c-4757-821a-36c824a825c1 50676ededab49eb09264654043d70f73 {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_f167b80f.miRNA-Seq.S3_L002_R1.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006860006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L002_R1_001.unaln.bam 281773618 BAM S3_L002_R1 unaligned CPTAC3 1517c841-4eeb-4d80-8b70-a6ac61b7fde2 515b6b7f16a0737fd38cb9284f85f7ec {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_f167b80f.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006860006 f06b2a06-4874-418f-ac56-445c1553c9d2_mirnaseq_gdc_realn.bam 312853517 BAM harmonized CPTAC3 0ececd7e-cc13-4e78-bb59-75bc51439270 9bc772ccc6bba69fd0879c1fc09d97f1 {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_f167b80f.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.chimeric.gdc_realn.bam 64438220 BAM chimeric harmonized CPTAC3 52dcc0d3-49ee-4aec-8d32-06f3e4a92f5a 604b0077fb9748662a250c9e5a00e8b0 {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_f167b80f.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.genomic.gdc_realn.bam 7828047599 BAM genomic harmonized CPTAC3 3cc33ac0-ad9e-4d90-b519-9628790e9309 efebd75a51a22d0f7d3f71c2dbd61d0a {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_f167b80f.RNA-Seq.S6_L002_R1.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R1_001.fastq.gz 3734743600 FASTQ S6_L002_R1 unaligned CPTAC3 274c496d-765e-4014-aa7a-d298cace23eb 98c2084c5b5c039ac465246c6d97ce6c {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_f167b80f.RNA-Seq.S6_L002_R2.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R2_001.fastq.gz 4225260777 FASTQ S6_L002_R2 unaligned CPTAC3 6ca2d9b8-2ef8-4a01-a7a7-c62215ea68fd d68f04908a78bcdf6e6cd51e76578be0 {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00447.DUP_f167b80f.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.transcriptome.gdc_realn.bam 10106412268 BAM transcriptome harmonized CPTAC3 61c431dd-48da-4717-8804-2c8c7578ef35 bd5dcc5c867566e405e7393e51863ffa {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00447.MethArray.Green.A C3L-00447 CCRCC Methylation_Array tissue_normal CPT0006950014 204930630084_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 be349024-ec31-4e8c-bf5e-1207e8b254ea d16de51045a5a83cd1d3d1c8866f772c {"aliquot_tag": "ALQ_8a8e4117", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.MethArray.Red.A C3L-00447 CCRCC Methylation_Array tissue_normal CPT0006950014 204930630084_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 7a73a8fc-bbe7-40b1-bec2-a83a7fd0dba6 4ec0875163e51eb9ff7fddde94f9e388 {"aliquot_tag": "ALQ_8a8e4117", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.miRNA-Seq.A.hg38 C3L-00447 CCRCC miRNA-Seq tissue_normal CPT0006950006 59e90c96-de91-44b2-b044-984edc20044e_mirnaseq_gdc_realn.bam 206332528 BAM harmonized CPTAC3 add8dcbf-d451-4788-915f-5e468b203a97 1441fd50f3b063a6265c623d45759466 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.miRNA-Seq.S14_L005_R1.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006900006 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L005_R1_001.unaln.bam 198207328 BAM S14_L005_R1 unaligned CPTAC3 f4bee798-04aa-4916-a12b-3baff5c84f62 9efa6ab1688c9413ff6bdc12a28d94f4 {"aliquot_tag": "ALQ_b57b9e0a", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00447.miRNA-Seq.S39_L004_R1.A C3L-00447 CCRCC miRNA-Seq tissue_normal CPT0006950006 181108_UNC31-K00269_0163_BH23TVBBXY_CTATAC_S39_L004_R1_001.unaln.bam 184484485 BAM S39_L004_R1 unaligned CPTAC3 0e5e857a-40cf-4e10-a339-14007a0ea64e 439e340029f2e7ef32e96c90323647db {"aliquot_tag": "ALQ_7d9b117a", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006900006 359e8028-d344-4f5f-80aa-e2e0a76fdf61_mirnaseq_gdc_realn.bam 220556502 BAM harmonized CPTAC3 9bc49b4a-43c2-43ea-972b-5fdca4d22608 0f911137d3aabe7cbc7969a3d636ee51 {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor"} -C3L-00447.RNA-Seq.chimeric.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.chimeric.gdc_realn.bam 67887427 BAM chimeric harmonized CPTAC3 79b95f69-5e70-4c75-b57e-b6e21c58eed3 cce7c4f9f75d9a654970b2d5d4119fe2 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.chimeric.gdc_realn.bam 68008806 BAM chimeric harmonized CPTAC3 390c490d-f090-446c-96ff-36b313532938 66851ec8d5b001479d92074af0ef2487 {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor"} -C3L-00447.RNA-Seq.genomic.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.genomic.gdc_realn.bam 6208589454 BAM genomic harmonized CPTAC3 6c268e9f-ea29-4d66-976b-a5b54351443f 01ea9ab2a9fd1106fa5fa308ad3106f8 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.genomic.gdc_realn.bam 8040630704 BAM genomic harmonized CPTAC3 f9b4a6ed-4c5c-45d0-9b34-7276c2975cbc ca29289b04c566f99fd743e5318e6abe {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor"} -C3L-00447.RNA-Seq.S13_L004_R1.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R1_001.fastq.gz 3819481651 FASTQ S13_L004_R1 unaligned CPTAC3 a408e8ca-1132-4cbf-bf67-5c76b012a2b7 2ebd59f8005dc4222e71005d293a9b86 {"aliquot_tag": "ALQ_b57b9e0a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00447.RNA-Seq.S13_L004_R2.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R2_001.fastq.gz 3892291967 FASTQ S13_L004_R2 unaligned CPTAC3 4690c1e9-6e9e-4f8f-b36a-e88f0fc5eb44 ae8f79377081648b4e22ae70e18f3013 {"aliquot_tag": "ALQ_b57b9e0a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00447.RNA-Seq.S48_L005_R1.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R1_001.fastq.gz 3268525725 FASTQ S48_L005_R1 unaligned CPTAC3 2b47995f-8175-4d08-96ac-f52a5bc41aa5 24f670a190e51197348450229a4015fa {"aliquot_tag": "ALQ_7d9b117a", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.RNA-Seq.S48_L005_R2.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R2_001.fastq.gz 3459761848 FASTQ S48_L005_R2 unaligned CPTAC3 e0807d28-39f2-4c6c-bd40-371a132840a8 87667a71505a8e833e20817dec9110a8 {"aliquot_tag": "ALQ_7d9b117a", "sample": "S48", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.RNA-Seq.transcriptome.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.transcriptome.gdc_realn.bam 8094615375 BAM transcriptome harmonized CPTAC3 d0dbdc7c-d428-4e10-b7cc-c280ba6c4ffc df6ac44df30d4abb54cae96417afd433 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.transcriptome.gdc_realn.bam 10052022014 BAM transcriptome harmonized CPTAC3 deae93bf-2d6b-4164-a140-c0324af3d95d 671ac1fa9aa9e77cbf8010b755a16ec0 {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor"} -C3L-00447.WGS.A C3L-00447 CCRCC WGS tissue_normal CPT0006950009 CPT0006950009.WholeGenome.RP-1303.bam 60240452401 BAM aligned CPTAC3 f3e6620b-16da-4707-be82-5b9be904677c b5f2ce9ecc1c05464409d264858889e8 {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.WGS.A.hg38 C3L-00447 CCRCC WGS tissue_normal CPT0006950009 675b1ebb-93a6-4a42-ba1f-aae866df5e02_wgs_gdc_realn.bam 88502185607 BAM harmonized CPTAC3 bc9ee663-4493-40b7-96c5-ebf358ce0d24 6d92c757a8270b46eac112e4bbfdc733 {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.WGS.N C3L-00447 CCRCC WGS blood_normal CPT0002760002 CPT0002760002.WholeGenome.RP-1303.bam 68003274140 BAM aligned CPTAC3 cd01374b-f105-4efc-aec2-2babfede450d c22f9c4990b36d59af98bab9818236d1 {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00447.WGS.N.hg38 C3L-00447 CCRCC WGS blood_normal CPT0002760002 2acf7759-a2bf-47a0-b5e9-f32f6d1dd576_gdc_realn.bam 101050468340 BAM harmonized CPTAC3 d2ec79c3-3ba9-4a98-b238-2a6dee356493 822c5e3b6b6bc9973b5fa55e0a0764bc {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00447.WXS.A C3L-00447 CCRCC WXS tissue_normal CPT0006950009 CPT0006950009.WholeExome.RP-1303.bam 32516193226 BAM aligned CPTAC3 f5847097-6ea7-4c1f-8185-9ab16c196a66 9dd1a2ca22badc92e953220e606ac1c0 {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.WXS.A.hg38 C3L-00447 CCRCC WXS tissue_normal CPT0006950009 675b1ebb-93a6-4a42-ba1f-aae866df5e02_wxs_gdc_realn.bam 44243834783 BAM harmonized CPTAC3 a303ecdb-a13a-4903-a1de-929f509971bc 913bd1675792b2047bacb194c7e6ad5c {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00447.WXS.N C3L-00447 CCRCC WXS blood_normal CPT0002760002 CPT0002760002.WholeExome.RP-1303.bam 22369156445 BAM aligned CPTAC3 e13596df-ab0a-4528-9479-d471822c71ec 4713f5a633d12899666994c31fcffcb6 {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00447.WXS.N.hg38 C3L-00447 CCRCC WXS blood_normal CPT0002760002 2acf7759-a2bf-47a0-b5e9-f32f6d1dd576_gdc_realn.bam 30882813614 BAM harmonized CPTAC3 5fcfa123-8827-4519-aefb-b0189ae82dc8 cf9ad0b46f5678903e0c5c56eb827368 {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00448.MethArray.Green.A C3L-00448 CCRCC Methylation_Array tissue_normal CPT0010170009 204930640051_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 236cfcd2-d98a-48b6-8671-8038a401f9d0 c8920fc2a446ce461b49fb0ed1e186ae {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.MethArray.Green.T C3L-00448 CCRCC Methylation_Array tumor CPT0010160006 202163550115_R02C01_Grn.idat 13676230 IDAT Green NA CPTAC3 aa70c016-7c19-43bf-a766-58db0fe32bd8 b3ce3c97e2dab9315ebc99dae1c76400 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor"} -C3L-00448.MethArray.Red.A C3L-00448 CCRCC Methylation_Array tissue_normal CPT0010170009 204930640051_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 36b43a18-e01f-4290-9e6d-337f6c429788 9e9fc3bede5c5d3b51af15d8db2eb61b {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.MethArray.Red.T C3L-00448 CCRCC Methylation_Array tumor CPT0010160006 202163550115_R02C01_Red.idat 13676230 IDAT Red NA CPTAC3 d08e3acc-3ecf-479b-88a9-46b778805e24 583e07433f11ef7df28c9d102e451d44 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor"} -C3L-00448.miRNA-Seq.A.hg38 C3L-00448 CCRCC miRNA-Seq tissue_normal CPT0010170006 4ab7c4fd-0030-4364-9000-792fe1ca535f_mirnaseq_gdc_realn.bam 261612138 BAM harmonized CPTAC3 c632e773-060b-4e66-b327-d97aad68c219 811b73edc59bf80063f3a37078605f47 {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.miRNA-Seq.S20_L004_R1.T C3L-00448 CCRCC miRNA-Seq tumor CPT0010160009 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L004_R1_001.unaln.bam 221766038 BAM S20_L004_R1 unaligned CPTAC3 db5ecb7b-d039-478f-998f-84d02a69990c a98d0e5e854dbb9a8a26ac6889d4fb0c {"aliquot_tag": "ALQ_e9adc1f2", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00448.miRNA-Seq.S44_L004_R1.A C3L-00448 CCRCC miRNA-Seq tissue_normal CPT0010170006 181108_UNC31-K00269_0163_BH23TVBBXY_TATAAT_S44_L004_R1_001.unaln.bam 240097002 BAM S44_L004_R1 unaligned CPTAC3 c5d548fe-ffa4-4901-94ed-b0320a570814 263fff5f0607047bbe74861d911abaad {"aliquot_tag": "ALQ_4472f5d3", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.miRNA-Seq.T.hg38 C3L-00448 CCRCC miRNA-Seq tumor CPT0010160009 1f02511f-4274-47d0-aa08-8d6ad7b1e363_mirnaseq_gdc_realn.bam 245351635 BAM harmonized CPTAC3 1cd59866-09fa-46f6-be9a-70f79234b508 6a51d9599ca2b70a34da3d7acf2bf5d4 {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor"} -C3L-00448.RNA-Seq.chimeric.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.chimeric.gdc_realn.bam 92397272 BAM chimeric harmonized CPTAC3 3cd56efb-c2da-4541-9cf9-7a049daf672d 8c5f9b1920a6ee35739bd9fef9839ed2 {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.RNA-Seq.chimeric.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.chimeric.gdc_realn.bam 136401882 BAM chimeric harmonized CPTAC3 c1b3b543-38b4-4529-9ba6-1ae0993cb508 9b2d5e163af3f5c4abb2209815555e5f {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor"} -C3L-00448.RNA-Seq.genomic.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.genomic.gdc_realn.bam 8013111817 BAM genomic harmonized CPTAC3 6e148aff-5aba-42a2-b5ff-5f81f3d7d5da 8908c4a404b9496f11ae6fd498dfde4d {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.RNA-Seq.genomic.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.genomic.gdc_realn.bam 7211488627 BAM genomic harmonized CPTAC3 f9fa4f23-f59a-4e0c-8f68-f06b3f7d6119 0bee55218b03db2c07945397556ebeec {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor"} -C3L-00448.RNA-Seq.S22_L006_R1.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3754468444 FASTQ S22_L006_R1 unaligned CPTAC3 d1a97b50-e454-4328-9721-c42b5b0fbf77 6db9e5ea09fc22134621e23ab91ae7d1 {"aliquot_tag": "ALQ_e9adc1f2", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00448.RNA-Seq.S22_L006_R2.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4057485300 FASTQ S22_L006_R2 unaligned CPTAC3 f8cb4da2-4715-47ba-b2ce-6ca381286e33 d3b3c4616803057ecc473ebba596db7a {"aliquot_tag": "ALQ_e9adc1f2", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00448.RNA-Seq.S6_L008_R1.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R1_001.fastq.gz 3512494128 FASTQ S6_L008_R1 unaligned CPTAC3 6e349078-0a09-424f-b71a-8b7828baef69 d1af5af64060798f4cc11fad695b034d {"aliquot_tag": "ALQ_4472f5d3", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.RNA-Seq.S6_L008_R2.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R2_001.fastq.gz 3947658167 FASTQ S6_L008_R2 unaligned CPTAC3 155f1043-34af-4c84-8f61-0f31e6d74e78 068eb50eb8f964eea3c9c9a76c04811a {"aliquot_tag": "ALQ_4472f5d3", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.RNA-Seq.transcriptome.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.transcriptome.gdc_realn.bam 8662135619 BAM transcriptome harmonized CPTAC3 def89b91-aeaf-4d43-99e4-b40fb67c5660 f114a9d431f16cdfb32e539cbf61b1fc {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.RNA-Seq.transcriptome.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.transcriptome.gdc_realn.bam 10339706680 BAM transcriptome harmonized CPTAC3 a1a3add0-730d-4140-b98a-2581416c1e99 0cbab83304425a22c425d728fb143529 {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor"} -C3L-00448.WGS.A C3L-00448 CCRCC WGS tissue_normal CPT0010170009 CPT0010170009.WholeGenome.RP-1303.bam 67511754016 BAM aligned CPTAC3 29fb0150-46f1-4dab-9623-f02ced83a3a1 d1ced1b8f153f1b08c46ad3592343a82 {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.WGS.A.hg38 C3L-00448 CCRCC WGS tissue_normal CPT0010170009 a1652ca5-7ad7-429a-ad21-e87be1f47801_wgs_gdc_realn.bam 98056521119 BAM harmonized CPTAC3 d85b0929-ca79-4a1d-930e-9ff3ea19ab19 d47f620ce617a4fc9e8d4c9c22b92140 {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.WGS.N C3L-00448 CCRCC WGS blood_normal CPT0019880002 CPT0019880002.WholeGenome.RP-1303.bam 56987130312 BAM aligned CPTAC3 a2eaaec0-542b-4405-8419-957c7fa17ae4 4dc039374f8c173fa596a76d5ef7903c {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal"} -C3L-00448.WGS.N.hg38 C3L-00448 CCRCC WGS blood_normal CPT0019880002 202bd835-a4df-46f0-b2d6-6494f37fead8_gdc_realn.bam 83459940966 BAM harmonized CPTAC3 315c8756-87ef-4620-a436-99ce446d9ca6 e674a6e819d1c8fee182cf4044d903de {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal"} -C3L-00448.WGS.T C3L-00448 CCRCC WGS tumor CPT0010160006 CPT0010160006.WholeGenome.RP-1303.bam 65252699548 BAM aligned CPTAC3 1f37730e-3748-4345-9b45-74dd338d727f db641b52fdabc6e830dc9462c0153b39 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor"} -C3L-00448.WGS.T.hg38 C3L-00448 CCRCC WGS tumor CPT0010160006 c3fde858-d1da-49bc-b32c-c10227fa28fb_gdc_realn.bam 95423542957 BAM harmonized CPTAC3 5fd869b5-46a2-416e-ad29-81af97074ef7 c5e55fd7969732b77923d8f8726294e8 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor"} -C3L-00448.WXS.A C3L-00448 CCRCC WXS tissue_normal CPT0010170009 CPT0010170009.WholeExome.RP-1303.bam 48601649839 BAM aligned CPTAC3 82584318-4734-408e-8fbb-aff6064d271d 3d194f57a44c0c251dccdaed0b59980d {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.WXS.A.hg38 C3L-00448 CCRCC WXS tissue_normal CPT0010170009 a1652ca5-7ad7-429a-ad21-e87be1f47801_wxs_gdc_realn.bam 66556653213 BAM harmonized CPTAC3 33f45a60-1b4d-4826-9e53-68f39203b9aa 09e01857d1742a815acf5695528453d8 {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00448.WXS.N C3L-00448 CCRCC WXS blood_normal CPT0019880002 CPT0019880002.WholeExome.RP-1303.bam 23109357002 BAM aligned CPTAC3 24d0876b-0071-4559-b985-e0b1681c7d93 6d0361b0575383476f78d5bec97ac524 {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal"} -C3L-00448.WXS.N.hg38 C3L-00448 CCRCC WXS blood_normal CPT0019880002 202bd835-a4df-46f0-b2d6-6494f37fead8_gdc_realn.bam 31319090845 BAM harmonized CPTAC3 6a64be8d-b163-43be-bba5-ed310b4603df a3ec03a9ecd48e4d6de3475535b9cacd {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal"} -C3L-00448.WXS.T C3L-00448 CCRCC WXS tumor CPT0010160006 CPT0010160006.WholeExome.RP-1303.bam 22106746406 BAM aligned CPTAC3 4a37a5f3-2a43-4cbc-a246-6eb7ada48ee6 3c48e103fecf308ab7c02c52a559ebbc {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor"} -C3L-00448.WXS.T.hg38 C3L-00448 CCRCC WXS tumor CPT0010160006 c3fde858-d1da-49bc-b32c-c10227fa28fb_gdc_realn.bam 30021939338 BAM harmonized CPTAC3 1c240bd3-cd33-44a0-a46b-ac813412bb81 c7b1239e3a7bd05dd63757467ffaaf00 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor"} -C3L-00449.MethArray.Green.T C3L-00449 UCEC Methylation_Array tumor CPT0007100009 202176300001_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7e08f48b-6753-4514-a243-d915eaf129da 7d1fdd788d30436885df2a035f9f5d1d {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor"} -C3L-00449.MethArray.Red.T C3L-00449 UCEC Methylation_Array tumor CPT0007100009 202176300001_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 561249a0-6ec0-47ae-9122-635692c38203 f84de308503a0b8c3a14a1ef6638fc33 {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor"} -C3L-00449.miRNA-Seq.S15_L005_R1.T C3L-00449 UCEC miRNA-Seq tumor CPT0007100006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L005_R1_001.unaln.bam 214438051 BAM S15_L005_R1 unaligned CPTAC3 e88f8cbc-1200-4154-94e7-7c16a5abaecb c55f9b2c507087c5ca63140d9e4674c0 {"aliquot_tag": "ALQ_ff5f17d3", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00449.miRNA-Seq.T.hg38 C3L-00449 UCEC miRNA-Seq tumor CPT0007100006 3cc09b8a-a2cf-4fe4-a333-f9f10fb7cee6_mirnaseq_gdc_realn.bam 237632892 BAM harmonized CPTAC3 73a3b68e-4cb7-4291-ad9a-63a975773791 85bc82d68a0828c714d34a5f258e5d7e {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.chimeric.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.chimeric.gdc_realn.bam 88485323 BAM chimeric harmonized CPTAC3 587ef1a4-dc28-4d53-a81e-c53df6c0108c 38e4df5f3326a22602ce4d1811aed978 {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.chimeric.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.chimeric.gdc_realn.bam 153084134 BAM chimeric harmonized CPTAC3 bb85598a-0292-4dde-9036-84a9a7a4db72 c259ff72e1a885cbfec1a3501910be6e {"aliquot_tag": "ALQ_23e627ba", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.genomic.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.genomic.gdc_realn.bam 8284152182 BAM genomic harmonized CPTAC3 7e293398-10dc-4689-a8e0-6a5567150eae 35749b6a79f0a700b9b7a0604db5e913 {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.genomic.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.genomic.gdc_realn.bam 7470227648 BAM genomic harmonized CPTAC3 ecd3fe52-ea4c-4791-8a9c-e2c6f34acb23 1671d352267e2f2c6e8eeac84650f75a {"aliquot_tag": "ALQ_23e627ba", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.S16_L004_R1.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R1_001.fastq.gz 3891984320 FASTQ S16_L004_R1 unaligned CPTAC3 f77c5bff-f9df-4a57-a2e9-391fcd5a6ba2 4103f8be23739f9355b27a84122672cd {"aliquot_tag": "ALQ_ff5f17d3", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.S16_L004_R2.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R2_001.fastq.gz 4249237550 FASTQ S16_L004_R2 unaligned CPTAC3 1faa1af4-b72b-4267-a86a-893fa2f67d7f 6b08d6e0720c2963040e16ffd6db3f7c {"aliquot_tag": "ALQ_ff5f17d3", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.S40_R1.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R1_001.fastq.gz 4197933703 FASTQ S40_R1 unaligned CPTAC3 ed0bf20a-e2ae-4473-a73a-dab717bbd173 84ae2ddb5700c0d64a416ba0cb8ceea1 {"aliquot_tag": "ALQ_23e627ba", "sample": "S40", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.S40_R2.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R2_001.fastq.gz 4350501314 FASTQ S40_R2 unaligned CPTAC3 88876704-973d-4605-b97f-b3dd61e4a2a1 0c11987b303fd4b8599005e92b18bbf1 {"aliquot_tag": "ALQ_23e627ba", "sample": "S40", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.transcriptome.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.transcriptome.gdc_realn.bam 11653781607 BAM transcriptome harmonized CPTAC3 d82c17aa-52cc-4f9c-a9d5-be2ddffda9af 70493903f32fb5d0f9b773660e0dd01d {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor"} -C3L-00449.RNA-Seq.transcriptome.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.transcriptome.gdc_realn.bam 3770838634 BAM transcriptome harmonized CPTAC3 6f6f8d4a-065e-4ffe-a8a8-aa99d4a13240 7cd4b7bd4bf92e30117fe6411ecf8e7d {"aliquot_tag": "ALQ_23e627ba", "gdc_sample_type": "Primary Tumor"} -C3L-00449.WGS.N C3L-00449 UCEC WGS blood_normal CPT0002770002 CPT0002770002.WholeGenome.RP-1303.bam 81149681684 BAM aligned CPTAC3 dbc49891-a7fd-4ef3-8c4e-f4edc7a5024d 9173f9205964fba9b71dde665ba05631 {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal"} -C3L-00449.WGS.N.hg38 C3L-00449 UCEC WGS blood_normal CPT0002770002 5a75740b-ad5b-4f29-8b9e-1d011f50aac7_gdc_realn.bam 118804355054 BAM harmonized CPTAC3 688ef886-6324-46d5-89ee-11be2c3c3b8b 607a412c98955474a9c9e3d47b33cbbb {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal"} -C3L-00449.WGS.T C3L-00449 UCEC WGS tumor CPT0007100009 CPT0007100009.WholeGenome.RP-1303.bam 73060765257 BAM aligned CPTAC3 08044ed5-cb84-4e26-a145-702633db7ba7 6047a6151dad8e619fbca70c75a9a616 {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor"} -C3L-00449.WGS.T.hg38 C3L-00449 UCEC WGS tumor CPT0007100009 73d8e268-db73-4fa5-b943-4e99a762e81a_gdc_realn.bam 103412720618 BAM harmonized CPTAC3 79b0a390-f6b2-4eb1-a905-90f69c0104e5 31466ceef7546ef51cefbbfa32aa1981 {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor"} -C3L-00449.WXS.N C3L-00449 UCEC WXS blood_normal CPT0002770002 CPT0002770002.WholeExome.RP-1303.bam 25720873823 BAM aligned CPTAC3 8e1f0839-24bd-4c64-b5e8-0293806b40d1 46a5d328754f1d422ead186970cbdd8e {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal"} -C3L-00449.WXS.N.hg38 C3L-00449 UCEC WXS blood_normal CPT0002770002 5a75740b-ad5b-4f29-8b9e-1d011f50aac7_gdc_realn.bam 35187133651 BAM harmonized CPTAC3 e8723283-d74f-456f-90e8-7a54b0d8abe2 90022be88200bd38ee0fcd4c78c135c0 {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal"} -C3L-00449.WXS.T C3L-00449 UCEC WXS tumor CPT0007100009 CPT0007100009.WholeExome.RP-1303.bam 30908952821 BAM aligned CPTAC3 ca52d893-7198-48a9-ae84-3b1a48b4f9af 13ced0cb3902f362088dbb2895c1627c {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor"} -C3L-00449.WXS.T.hg38 C3L-00449 UCEC WXS tumor CPT0007100009 73d8e268-db73-4fa5-b943-4e99a762e81a_gdc_realn.bam 42170411863 BAM harmonized CPTAC3 497a5093-f4f0-4fbd-b869-77bec7018f5b 642f8808b27adf38d0387d8876db381b {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor"} -C3L-00452.MethArray.Green.Tbm C3L-00452 AML Methylation_Array tumor_bone_marrow CPT0018070002 202234380024_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 4b1c09cd-0bb9-4c37-89ab-4e0738ca93eb 4f1cea79195b7c600a7ded227914e1f5 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.MethArray.Red.Tbm C3L-00452 AML Methylation_Array tumor_bone_marrow CPT0018070002 202234380024_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 a27cf150-1ded-489e-9971-0d934c6679ae 9d048321c4c56d52e62c8a4e736cf2c3 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.miRNA-Seq.S25_L008_R1.Tbm C3L-00452 AML miRNA-Seq tumor_bone_marrow CPT0018040002 180724_UNC32-K00270_0106_BHWK3MBBXX_ATCACG_S25_L008_R1_001.unaln.bam 254108921 BAM S25_L008_R1 unaligned CPTAC3 2d23609d-8720-40fd-b7ae-670be8d711c2 52851784909a78a98a19bd92b645161d {"aliquot_tag": "ALQ_fc0cd6d8", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.miRNA-Seq.Tbm.hg38 C3L-00452 AML miRNA-Seq tumor_bone_marrow CPT0018040002 8d705e15-d3cc-4cd6-a738-7e446393c1bd_mirnaseq_gdc_realn.bam 267589800 BAM harmonized CPTAC3 1e7d9791-3b5e-4cc1-8590-ce666d8633e1 207387a83ce8d373b305a24c0ad91e1e {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.RNA-Seq.chimeric.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.chimeric.gdc_realn.bam 59155781 BAM chimeric harmonized CPTAC3 b4ccc9bd-fb70-4bcb-bb30-37bd1becfbce f5e3e72099d18c116e49cca47a51477f {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.RNA-Seq.genomic.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.genomic.gdc_realn.bam 9490961278 BAM genomic harmonized CPTAC3 255db370-3dec-4150-958c-84bb88ba10ae 79a2dfcdba8d4eda13d18a402cc478de {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.RNA-Seq.S18_L005_R1.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R1_001.fastq.gz 4094003394 FASTQ S18_L005_R1 unaligned CPTAC3 e3bcf26f-ee7e-479e-b957-e5ade5eca769 06954934d1fe26bbebfb2e67ad38166b {"aliquot_tag": "ALQ_fc0cd6d8", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.RNA-Seq.S18_L005_R2.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R2_001.fastq.gz 4032209570 FASTQ S18_L005_R2 unaligned CPTAC3 5505543b-e537-4d2a-b0f3-3eef15780673 eb0d2cce7bab9d5b272724cb8cb1f033 {"aliquot_tag": "ALQ_fc0cd6d8", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.RNA-Seq.transcriptome.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.transcriptome.gdc_realn.bam 9657092178 BAM transcriptome harmonized CPTAC3 bceafe6a-4d5b-4ab5-b7e7-bf7f84a3775f 82ee5df8beab9936babc3c8f58c6dc20 {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.WGS.Tbm C3L-00452 AML WGS tumor_bone_marrow CPT0018070002 CPT0018070002.WholeGenome.RP-1303.bam 58958754833 BAM aligned CPTAC3 44b514c5-97cb-4380-9e8e-80be4c0c6519 febf425e09ac752d3344a86e793c83cb {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.WGS.Tbm.hg38 C3L-00452 AML WGS tumor_bone_marrow CPT0018070002 c6810a58-cb12-4f26-9a07-0cba34cf62a8_wgs_gdc_realn.bam 86060336124 BAM harmonized CPTAC3 4b990fbb-c678-4006-b5ff-860c9e6fd6d0 5726e50aa44847e5ec8b635a6d831688 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.WXS.Tbm C3L-00452 AML WXS tumor_bone_marrow CPT0018070002 CPT0018070002.WholeExome.RP-1303.bam 53756994754 BAM aligned CPTAC3 9b012fcc-5cf8-47d6-9470-00a73d8cce4a b267ad0dc19a006916298049b3829aff {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00452.WXS.Tbm.hg38 C3L-00452 AML WXS tumor_bone_marrow CPT0018070002 c6810a58-cb12-4f26-9a07-0cba34cf62a8_wxs_gdc_realn.bam 74034518289 BAM harmonized CPTAC3 45ed52e8-d48d-40a1-a344-8a473fbdcfe9 752c667ce9efc5c8edeaab16eb85e835 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.MethArray.Green.Tbm C3L-00453 AML Methylation_Array tumor_bone_marrow CPT0054620002 202234370093_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a5877906-8dac-46ca-845e-f8cd95e3dff9 9aae04f7225010c2503d61b3e400a235 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.MethArray.Red.Tbm C3L-00453 AML Methylation_Array tumor_bone_marrow CPT0054620002 202234370093_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3f216486-99cd-4f94-87b1-33d152f5ff37 2c49def6e5889d3c8494853c5a0af02f {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.miRNA-Seq.S31_L008_R1.Tbm C3L-00453 AML miRNA-Seq tumor_bone_marrow CPT0054580002 180724_UNC32-K00270_0106_BHWK3MBBXX_ACTTGA_S31_L008_R1_001.unaln.bam 267558881 BAM S31_L008_R1 unaligned CPTAC3 f9ad2dbe-0e23-48e0-9f2f-d3509131436e 5cc143dda4869191bf808352fbe1b490 {"aliquot_tag": "ALQ_2adbcee4", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.miRNA-Seq.Tbm.hg38 C3L-00453 AML miRNA-Seq tumor_bone_marrow CPT0054580002 97c43712-4905-4115-a4fa-d0094bd3ef95_mirnaseq_gdc_realn.bam 278902804 BAM harmonized CPTAC3 a365c8be-f1ea-4e39-b113-5742d1a9bc15 c440058fc797698efdd5fbfbf41a42ef {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.RNA-Seq.chimeric.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.chimeric.gdc_realn.bam 40627112 BAM chimeric harmonized CPTAC3 c394c92b-7574-4b0b-a43b-3d0b1dbc258d 01e0d940b1a9f7492e1cda2e14c42dce {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.RNA-Seq.genomic.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.genomic.gdc_realn.bam 7074959042 BAM genomic harmonized CPTAC3 daa5c985-518e-4067-85f6-a9e5b2303c68 c864bef975acc627c661c86b4d60fe7f {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.RNA-Seq.S15_L004_R1.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3513795167 FASTQ S15_L004_R1 unaligned CPTAC3 cee5ec12-9d91-4a34-b9e0-82664a162d63 f8030ec35bfebf7354a69f6befc19760 {"aliquot_tag": "ALQ_2adbcee4", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.RNA-Seq.S15_L004_R2.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 3898658561 FASTQ S15_L004_R2 unaligned CPTAC3 391e6f40-e618-47c5-a577-2f1c49aa7f67 5b46cc6847db94def23bab46dedcc029 {"aliquot_tag": "ALQ_2adbcee4", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.RNA-Seq.transcriptome.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.transcriptome.gdc_realn.bam 10050460210 BAM transcriptome harmonized CPTAC3 28efe605-7567-4f9b-9b6e-ebe12995bc5f 047f8aa92ec3ac940e3e25abe6c9c67c {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.WGS.Nbc C3L-00453 AML WGS buccal_normal CPT0054690005 CPT0054690005.WholeGenome.RP-1303.bam 61651871560 BAM aligned CPTAC3 d58d2353-a50e-4e4f-8635-bc82cabcfd67 7fb23178fe08d18d9d4f9901044ea148 {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00453.WGS.Nbc.hg38 C3L-00453 AML WGS buccal_normal CPT0054690005 f98a5d79-749c-4429-89c1-9d3851f5bf83_wgs_gdc_realn.bam 93094661051 BAM harmonized CPTAC3 81c4a2f0-222a-44be-94be-54b1c8095f79 1247bc31d676a154e871d12226590e2b {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00453.WGS.Tbm C3L-00453 AML WGS tumor_bone_marrow CPT0054620002 CPT0054620002.WholeGenome.RP-1303.bam 60288249137 BAM aligned CPTAC3 0f0ba2c8-dff7-4237-849a-e6ad1a93594f e4a3f80a0f4e3248222e9ccf1e877382 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.WGS.Tbm.hg38 C3L-00453 AML WGS tumor_bone_marrow CPT0054620002 c5fd73ad-144a-458c-9f91-f3fcb39a0fd1_wgs_gdc_realn.bam 88716398405 BAM harmonized CPTAC3 71e80e61-93ae-47a3-8528-d9f0b5ef6d84 554a7c00ddcbaa4596d41f33109f9c02 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.WXS.Nbc C3L-00453 AML WXS buccal_normal CPT0054690005 CPT0054690005.WholeExome.RP-1303.bam 24108265758 BAM aligned CPTAC3 a478cec3-9529-46f2-acaa-c99ad73fa1fb 45e12c095f94f524888ea6cc86a269fe {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00453.WXS.Nbc.hg38 C3L-00453 AML WXS buccal_normal CPT0054690005 f98a5d79-749c-4429-89c1-9d3851f5bf83_wxs_gdc_realn.bam 33184485044 BAM harmonized CPTAC3 1eec226f-34bd-41d9-a5d4-d8c4f28f34eb 7cfdd4847f656fca3f31d22f3cc84af6 {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00453.WXS.Tbm C3L-00453 AML WXS tumor_bone_marrow CPT0054620002 CPT0054620002.WholeExome.RP-1303.bam 44048025211 BAM aligned CPTAC3 700a015c-f8c9-4533-926f-8bc97a884705 7af66084868b45e0e89ba5f91ab6af56 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00453.WXS.Tbm.hg38 C3L-00453 AML WXS tumor_bone_marrow CPT0054620002 c5fd73ad-144a-458c-9f91-f3fcb39a0fd1_wxs_gdc_realn.bam 59373871154 BAM harmonized CPTAC3 2aa6541b-fbe2-4ae6-abd1-02fe1691cb97 6d32387170a694afbb533f7c246c634e {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.MethArray.Green.Tbm C3L-00455 AML Methylation_Array tumor_bone_marrow CPT0054500002 202176290105_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 381d2935-b36d-403f-825c-817f0f4dd344 1d435c328b5253203b32ebf05e0a258c {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.MethArray.Red.Tbm C3L-00455 AML Methylation_Array tumor_bone_marrow CPT0054500002 202176290105_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b35ecbd-b2e6-4e54-9a01-c38778c7de36 f7e103cccaf6b845b2893f37ddc77d08 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.miRNA-Seq.S26_L002_R1.Tbm C3L-00455 AML miRNA-Seq tumor_bone_marrow CPT0054530002 180924_UNC31-K00269_0154_AHWTMLBBXX_TCCCGA_S26_L002_R1_001.unaln.bam 215904033 BAM S26_L002_R1 unaligned CPTAC3 6fe85f9c-b40f-4c6e-bda0-9281bfedd113 33013e9f05c0551a002daf2fa3b8055f {"aliquot_tag": "ALQ_5d0bfff5", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.miRNA-Seq.Tbm.hg38 C3L-00455 AML miRNA-Seq tumor_bone_marrow CPT0054530002 f401a998-3c9a-43e0-98b3-cb4c6f71a0a8_mirnaseq_gdc_realn.bam 228472783 BAM harmonized CPTAC3 491dddaa-5b75-48ad-bdab-6f8868570129 1a0e68714c104303cb9be9e1a63fb5b9 {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.RNA-Seq.chimeric.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.chimeric.gdc_realn.bam 44533448 BAM chimeric harmonized CPTAC3 4e1a6357-16a0-4eb2-8600-a35f05e243f8 cd86bb066f2456c678dd553f44e645f2 {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.RNA-Seq.genomic.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.genomic.gdc_realn.bam 11108676516 BAM genomic harmonized CPTAC3 dfdb4164-fe88-4631-8073-e68ee040fdc9 d55c9f0ecef45e1659295e9e8b2acce3 {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.RNA-Seq.S14_L004_R1.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4469739392 FASTQ S14_L004_R1 unaligned CPTAC3 f0783087-c82a-4b61-aa63-73e600fc9795 8567b031328d5f0581e06f78647d7ff8 {"aliquot_tag": "ALQ_5d0bfff5", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.RNA-Seq.S14_L004_R2.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 4899302775 FASTQ S14_L004_R2 unaligned CPTAC3 755b832b-3ed5-413b-b62b-8dd8ed6079b7 72f1e5fc9528c1dde7eed27dc107f61d {"aliquot_tag": "ALQ_5d0bfff5", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.RNA-Seq.transcriptome.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.transcriptome.gdc_realn.bam 12418844716 BAM transcriptome harmonized CPTAC3 246e55bd-01f6-4955-ab9c-cde5673b0177 d138c9801546d93ba667cfaf0a15587b {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.WGS.Nbc C3L-00455 AML WGS buccal_normal CPT0054550002 CPT0054550002.WholeGenome.RP-1303.bam 73069954598 BAM aligned CPTAC3 7146aec8-2c3d-43cc-891d-68dd6a9e2f16 339111a6162fa7f200c0f15375f662dd {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00455.WGS.Nbc.hg38 C3L-00455 AML WGS buccal_normal CPT0054550002 53b178ad-5458-411b-9495-2e35e186f2a3_gdc_realn.bam 110303377443 BAM harmonized CPTAC3 1210073b-32e5-4acf-a539-58eceab95e18 6bbfc03e5a9f2813dca66291460db5de {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00455.WGS.Tbm C3L-00455 AML WGS tumor_bone_marrow CPT0054500002 CPT0054500002.WholeGenome.RP-1303.bam 93285274251 BAM aligned CPTAC3 eeb5756a-d421-46bc-8f58-1f92a835e2c3 0223411553f70db90bc279c19d0c1207 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.WGS.Tbm.hg38 C3L-00455 AML WGS tumor_bone_marrow CPT0054500002 138acbf2-23a0-4723-ae5a-4389c719ea14_gdc_realn.bam 145149697232 BAM harmonized CPTAC3 2d456244-3a1d-4fe1-965b-91b3f50e85fb 0b574865a2b400233a9fdbd6cd5bb4f3 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.WXS.Nbc C3L-00455 AML WXS buccal_normal CPT0054550002 CPT0054550002.WholeExome.RP-1303.bam 22274428959 BAM aligned CPTAC3 594edd06-70da-41aa-aadf-9b58e365e9f4 71956c7bd2a5684153a2346987351bfb {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00455.WXS.Nbc.hg38 C3L-00455 AML WXS buccal_normal CPT0054550002 53b178ad-5458-411b-9495-2e35e186f2a3_gdc_realn.bam 30922805017 BAM harmonized CPTAC3 06d638fc-772d-4333-83ec-0251b848de46 c4da383cec6f26264dfecec0b9d45d12 {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00455.WXS.Tbm C3L-00455 AML WXS tumor_bone_marrow CPT0054500002 CPT0054500002.WholeExome.RP-1303.bam 34208032345 BAM aligned CPTAC3 a78bb699-0b97-4ca6-a2c4-ddca43bc5dda 03d6a175e64693dc4b3410b0116153b4 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00455.WXS.Tbm.hg38 C3L-00455 AML WXS tumor_bone_marrow CPT0054500002 138acbf2-23a0-4723-ae5a-4389c719ea14_gdc_realn.bam 46435753511 BAM harmonized CPTAC3 847fcbbd-e8a4-464a-8e8f-3e65426a8afe 95609cf5a4bfd93bd196a4088170f9ab {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.ADD_8a71df48.WGS.Nbc C3L-00457 AML WGS buccal_normal CPT0054870005 CPT0054870005.WholeGenome.RP-1303.bam 69698611334 BAM aligned CPTAC3 a0f47869-5aa2-4da5-9de2-acab2d008fc8 f21e42febb1f7c1d4e38b14300683fae {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00457.ADD_8a71df48.WGS.Nbc.hg38 C3L-00457 AML WGS buccal_normal CPT0054870005 4cfbc7ba-aeed-40f9-bd9e-cb7bdc0f1eea_wgs_gdc_realn.bam 102810790174 BAM harmonized CPTAC3 4786fe3f-0a54-4f8d-9a37-30116422748d b864745f49c32720ce91774a048ea93c {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00457.ADD_8a71df48.WXS.Nbc C3L-00457 AML WXS buccal_normal CPT0054870005 CPT0054870005.WholeExome.RP-1303.bam 27023691727 BAM aligned CPTAC3 6ffd72f5-aa4a-44c0-a313-d0aa83e41f7a dc44fa1deb68d66fd4f75eb1d219d1ab {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00457.ADD_8a71df48.WXS.Nbc.hg38 C3L-00457 AML WXS buccal_normal CPT0054870005 4cfbc7ba-aeed-40f9-bd9e-cb7bdc0f1eea_wxs_gdc_realn.bam 36356538540 BAM harmonized CPTAC3 f7352fa2-f8b2-48ff-8e77-a1850206d093 087f9633abb8e9eb8c16e934447631bf {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00457.MethArray.Green.Tbm C3L-00457 AML Methylation_Array tumor_bone_marrow CPT0054850002 202234380064_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e745772c-acd6-4886-864e-9c4522e97637 9b6789a8a5d985eb94cf4eba6c36b898 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.MethArray.Red.Tbm C3L-00457 AML Methylation_Array tumor_bone_marrow CPT0054850002 202234380064_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 abc0671f-cdbd-42fd-a021-468d4122a939 ab0d11b8e8a5a3d17ab13a110c61d7e3 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.miRNA-Seq.S23_L006_R1.Tbm C3L-00457 AML miRNA-Seq tumor_bone_marrow CPT0054830002 180828_UNC32-K00270_0112_AHWTLNBBXX_ATCACG_S23_L006_R1_001.unaln.bam 224690054 BAM S23_L006_R1 unaligned CPTAC3 18da77a0-292f-4e78-9b17-b9eb7afdfe09 0c9d3b515e4fbe840a32de1d2b70d16b {"aliquot_tag": "ALQ_e195ec2b", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.miRNA-Seq.Tbm.hg38 C3L-00457 AML miRNA-Seq tumor_bone_marrow CPT0054830002 7054e982-11d1-40cc-8a0f-bfd8dbcb2405_mirnaseq_gdc_realn.bam 241966461 BAM harmonized CPTAC3 deeecc20-3528-4881-bf5f-47a8bd845b20 01b36ca3f31d210a35d0c89b8d50fbc7 {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.RNA-Seq.chimeric.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.chimeric.gdc_realn.bam 50298528 BAM chimeric harmonized CPTAC3 fb91945d-a6e3-4c54-a96d-a949573e233c 80af84ad865ba479c62db74747e35718 {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.RNA-Seq.genomic.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.genomic.gdc_realn.bam 10861561464 BAM genomic harmonized CPTAC3 d96884b3-5acb-431a-8691-eea2f024e3e7 6b97c5361a7aa78b36762d01ceb7b353 {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.RNA-Seq.S5_L002_R1.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R1_001.fastq.gz 5237946882 FASTQ S5_L002_R1 unaligned CPTAC3 7fbb57ea-ce5f-460f-926c-bcd3c497d48e a33def0b3a04518a9c29bfa98ba43292 {"aliquot_tag": "ALQ_e195ec2b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.RNA-Seq.S5_L002_R2.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R2_001.fastq.gz 5266271358 FASTQ S5_L002_R2 unaligned CPTAC3 c2c12512-899d-403d-8eee-2bb9b031489b 7d0266cc7ee64672f0a6e36841e7aaa7 {"aliquot_tag": "ALQ_e195ec2b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.RNA-Seq.transcriptome.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.transcriptome.gdc_realn.bam 14406441392 BAM transcriptome harmonized CPTAC3 61e915b2-53d0-4fda-9358-33f963c1a6e0 ab27bdc887ff9d937b154ef90e9bf48f {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.WGS.Tbm C3L-00457 AML WGS tumor_bone_marrow CPT0054850002 CPT0054850002.WholeGenome.RP-1303.bam 56262061965 BAM aligned CPTAC3 86f2966f-8004-4a17-a5c8-acbba5e47bd7 67ce2d33cbc3af62d8c6439564023da8 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.WGS.Tbm.hg38 C3L-00457 AML WGS tumor_bone_marrow CPT0054850002 6a3c7519-742a-4459-9abb-5c9a43c8d3f8_wgs_gdc_realn.bam 82332121109 BAM harmonized CPTAC3 34d5947e-1b54-49b7-a505-93fe5511f669 671b6e89cb2d352ea4947cb831476c54 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.WXS.Tbm C3L-00457 AML WXS tumor_bone_marrow CPT0054850002 CPT0054850002.WholeExome.RP-1303.bam 34186082977 BAM aligned CPTAC3 f5d8c6aa-ebab-4d81-89ec-82b9621b1d35 288540238740efeb4114faba2b8b6979 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00457.WXS.Tbm.hg38 C3L-00457 AML WXS tumor_bone_marrow CPT0054850002 6a3c7519-742a-4459-9abb-5c9a43c8d3f8_wxs_gdc_realn.bam 46247539036 BAM harmonized CPTAC3 f92e948a-b6de-4b65-8740-32a0736bb939 639a7e7f7658e71d5219baa30e341067 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.MethArray.Green.Tbm C3L-00458 AML Methylation_Array tumor_bone_marrow CPT0054750002 202176290087_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 10e504d1-a2ba-447b-8ddd-7b3c8149ebbe 3619538e1cfd65c627b6e683c3dda8ae {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.MethArray.Red.Tbm C3L-00458 AML Methylation_Array tumor_bone_marrow CPT0054750002 202176290087_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 696ecd16-72eb-4a38-b07f-5db23b46500d 8fde17be218c4de99f61f02f33cfd653 {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.miRNA-Seq.S7_L001_R1.Tbm C3L-00458 AML miRNA-Seq tumor_bone_marrow CPT0054770002 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L001_R1_001.unaln.bam 151314497 BAM S7_L001_R1 unaligned CPTAC3 af0a24c9-59f1-4096-b9c8-33304ed5c4ff 55468369d6ffa5d5aa1bd5b35c56b44b {"aliquot_tag": "ALQ_e543f83e", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.miRNA-Seq.Tbm.hg38 C3L-00458 AML miRNA-Seq tumor_bone_marrow CPT0054770002 adb5deb5-63a4-4682-800f-00b930679fa2_mirnaseq_gdc_realn.bam 170858505 BAM harmonized CPTAC3 af7ec801-2b30-43fb-b8cd-d9bf7ce7997b 1c7335f481b089ba197d29b755497017 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.RNA-Seq.chimeric.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.chimeric.gdc_realn.bam 78541356 BAM chimeric harmonized CPTAC3 3c9b3fbd-b06e-4d3f-a6fa-15f2695ebeb0 3d2ebed2d01b78ecd59e29a7729d3711 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.RNA-Seq.genomic.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.genomic.gdc_realn.bam 8644201287 BAM genomic harmonized CPTAC3 b8e034fb-56b2-44da-b961-587335bcf501 e2971592687f0955d7bff9ba33fef1e7 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.RNA-Seq.S21_L006_R1.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3829956645 FASTQ S21_L006_R1 unaligned CPTAC3 b2975393-27f8-41e8-a678-07b90a3911b2 5d25526bb5ac03f6e70d11a607e7a050 {"aliquot_tag": "ALQ_e543f83e", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.RNA-Seq.S21_L006_R2.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4180610952 FASTQ S21_L006_R2 unaligned CPTAC3 62eeaa76-736b-45c8-892d-67587a27288b 5ef5c0b17f1031291ce2bc21033649ee {"aliquot_tag": "ALQ_e543f83e", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.RNA-Seq.transcriptome.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.transcriptome.gdc_realn.bam 8045728661 BAM transcriptome harmonized CPTAC3 d8314fb8-1523-4c4e-adc1-303093441281 e74ce001081c125ff3f10ad794289691 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.WGS.Nbc C3L-00458 AML WGS buccal_normal CPT0054800005 CPT0054800005.WholeGenome.RP-1303.bam 77742196684 BAM aligned CPTAC3 7f076ba7-def6-48f5-ab33-526f4b6d709f d09c92df5c2ec64ab3ba77db3d09ca34 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00458.WGS.Nbc.hg38 C3L-00458 AML WGS buccal_normal CPT0054800005 06571337-83f2-4bf5-bf4b-bf2bcf13aa60_gdc_realn.bam 121033703970 BAM harmonized CPTAC3 32240eef-9d20-4d0d-b2c1-05600a4784d7 0836b2c48812bc69535f5c7afb6a40e1 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00458.WGS.Tbm C3L-00458 AML WGS tumor_bone_marrow CPT0054750002 CPT0054750002.WholeGenome.RP-1303.bam 64315378512 BAM aligned CPTAC3 3be05a64-ff2e-45d7-9140-43ee8005d06e d7e036189048e26a80b2606e9290bf48 {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.WGS.Tbm.hg38 C3L-00458 AML WGS tumor_bone_marrow CPT0054750002 830679b3-3556-4351-9513-7f7f085d17c0_gdc_realn.bam 95724539832 BAM harmonized CPTAC3 32532239-85f8-42a4-8fa8-d7c513bc436a c1b56d992c54559b60200700c0324d1a {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.WXS.Nbc C3L-00458 AML WXS buccal_normal CPT0054800005 CPT0054800005.WholeExome.RP-1303.bam 26365505169 BAM aligned CPTAC3 844e0064-8820-46e0-9d01-299c738de57f c5293c5dee827a11375e98529a0f0bf0 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00458.WXS.Nbc.hg38 C3L-00458 AML WXS buccal_normal CPT0054800005 06571337-83f2-4bf5-bf4b-bf2bcf13aa60_gdc_realn.bam 36296893894 BAM harmonized CPTAC3 035bacd5-f005-46d0-a03e-5d6005892ba0 a0dbe3319ae50a5b05579cb5f135fc82 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00458.WXS.Tbm C3L-00458 AML WXS tumor_bone_marrow CPT0054750002 CPT0054750002.WholeExome.RP-1303.bam 33538956445 BAM aligned CPTAC3 80d77949-dea7-4471-9176-b20fc3c7b51f 673923190dda89872e5393886db7c46c {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00458.WXS.Tbm.hg38 C3L-00458 AML WXS tumor_bone_marrow CPT0054750002 830679b3-3556-4351-9513-7f7f085d17c0_gdc_realn.bam 45726066126 BAM harmonized CPTAC3 62a85f23-7204-40ea-af37-b5a6866764b8 2c443617becb7cbf3d1401c112858bf4 {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.MethArray.Green.Tbm C3L-00459 AML Methylation_Array tumor_bone_marrow CPT0054960002 202234370079_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5b295a5f-f6b4-4706-b8a3-f97e0f4e1d31 65c6c9fe33b30093d7fee0601559c2d5 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.MethArray.Red.Tbm C3L-00459 AML Methylation_Array tumor_bone_marrow CPT0054960002 202234370079_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 169904d8-6b75-4e75-a9f7-4a0bec4ad37a 3b04660d626db0a67a808aa85f918736 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.miRNA-Seq.S45_L008_R1.Tbm C3L-00459 AML miRNA-Seq tumor_bone_marrow CPT0054940002 180724_UNC32-K00270_0106_BHWK3MBBXX_CGATGT_S45_L008_R1_001.unaln.bam 254001543 BAM S45_L008_R1 unaligned CPTAC3 c3e98187-c19f-49e6-8f4c-eaff3a00c8f7 5b4857e25762095c2dd0c214c973c0bf {"aliquot_tag": "ALQ_98e9e39e", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.miRNA-Seq.Tbm.hg38 C3L-00459 AML miRNA-Seq tumor_bone_marrow CPT0054940002 434b0798-2ca1-4fa1-9e11-8c37cb399965_mirnaseq_gdc_realn.bam 264738806 BAM harmonized CPTAC3 ef2e3342-ee47-4dfe-9368-59ad16d8dce1 6a4d1ae8bc85083646625f9346a76249 {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.RNA-Seq.chimeric.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.chimeric.gdc_realn.bam 34704169 BAM chimeric harmonized CPTAC3 a461f574-b1be-4a77-b6ad-8b7b8f86a34d c896782e96045ef5ac005a1445702d3d {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.RNA-Seq.genomic.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.genomic.gdc_realn.bam 12522127592 BAM genomic harmonized CPTAC3 1b8eee01-1f5b-4e21-9dc8-197a7dbc041b 7bc3cd188e2766e0569e32e03b0816e4 {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.RNA-Seq.S17_L005_R1.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R1_001.fastq.gz 3836207363 FASTQ S17_L005_R1 unaligned CPTAC3 61333545-45a2-4cfd-b5c8-b95fbbbb875b 6d8309bc5abe4d5e815c68715007d420 {"aliquot_tag": "ALQ_98e9e39e", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.RNA-Seq.S17_L005_R2.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R2_001.fastq.gz 4242868726 FASTQ S17_L005_R2 unaligned CPTAC3 22d6579a-2e1c-4606-b175-e79e8b4d96f6 f4a8a445a82e329d96f9e73023262d3c {"aliquot_tag": "ALQ_98e9e39e", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.RNA-Seq.transcriptome.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.transcriptome.gdc_realn.bam 10347940267 BAM transcriptome harmonized CPTAC3 b909f2c6-a858-43e5-9005-b5b1b19d6236 cc0cde24afa50abcb9ee2e83400dfdce {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.WGS.Nbc C3L-00459 AML WGS buccal_normal CPT0054990002 CPT0054990002.WholeGenome.RP-1303.bam 56985933744 BAM aligned CPTAC3 6536db8c-f6e6-480b-817e-4407282925a0 f0f47d316ec63e392e984ca6a5ccada9 {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00459.WGS.Nbc.hg38 C3L-00459 AML WGS buccal_normal CPT0054990002 d7b806ba-b895-44e0-bbad-29203621615f_wgs_gdc_realn.bam 84608866721 BAM harmonized CPTAC3 8e608d7f-19fc-4ab3-86fa-61e96ce384bb 1ee0ef5b2c29f86a6fa8a16bfa138c1e {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00459.WGS.Tbm C3L-00459 AML WGS tumor_bone_marrow CPT0054960002 CPT0054960002.WholeGenome.RP-1303.bam 65478911353 BAM aligned CPTAC3 fd02a2ed-221b-4fcd-b036-87dc04b552fc 7ae9c294b63086f4e143908eecda4365 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.WGS.Tbm.hg38 C3L-00459 AML WGS tumor_bone_marrow CPT0054960002 a8ba6df1-a55b-44d5-b241-f8acaed07831_wgs_gdc_realn.bam 97208369470 BAM harmonized CPTAC3 09c32a71-39bd-49ab-8394-fdce4d6d0dd6 a6419e11839c5713436ede723fa28f8d {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.WXS.Nbc C3L-00459 AML WXS buccal_normal CPT0054990002 CPT0054990002.WholeExome.RP-1303.bam 45738513317 BAM aligned CPTAC3 43e5938e-8ee3-4f7c-96fe-ffdd50c387b6 54be27be5551548a6af0ea46867f78c1 {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00459.WXS.Nbc.hg38 C3L-00459 AML WXS buccal_normal CPT0054990002 d7b806ba-b895-44e0-bbad-29203621615f_wxs_gdc_realn.bam 62012980775 BAM harmonized CPTAC3 d2fe6d7c-2b20-4742-bb0e-3244cb99dbdc 66d767bc0ad2ae2eda60e9974f8203a3 {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00459.WXS.Tbm C3L-00459 AML WXS tumor_bone_marrow CPT0054960002 CPT0054960002.WholeExome.RP-1303.bam 27850807579 BAM aligned CPTAC3 9212daf2-9f5d-4b18-a6ee-e895f905e365 c10159312032412341bad7001d45af39 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00459.WXS.Tbm.hg38 C3L-00459 AML WXS tumor_bone_marrow CPT0054960002 a8ba6df1-a55b-44d5-b241-f8acaed07831_wxs_gdc_realn.bam 38411829896 BAM harmonized CPTAC3 d9cb9b36-252f-4f96-ba42-52a7cd0368eb 7a752e5ab8bf5a13b74f8a61aca5553c {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.MethArray.Green.Tbm C3L-00460 AML Methylation_Array tumor_bone_marrow CPT0054410002 202184900148_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 21ffe10e-291f-4e80-ac30-ec026105bfb8 708e8c7739cf95ca20c948ee75c44e1a {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.MethArray.Red.Tbm C3L-00460 AML Methylation_Array tumor_bone_marrow CPT0054410002 202184900148_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 646990a2-b29f-4911-a566-8dd143dea98b 37886503c963d0a6471c57d69c836ce2 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.miRNA-Seq.S21_L005_R1.Tbm C3L-00460 AML miRNA-Seq tumor_bone_marrow CPT0054420002 181119_UNC31-K00269_0165_AH27WCBBXY_TCATTC_S21_L005_R1_001.unaln.bam 180642004 BAM S21_L005_R1 unaligned CPTAC3 89695c8a-380c-423f-9abe-d9e4b3090f20 2702b93644d437ba3c0bbfb3934bae9b {"aliquot_tag": "ALQ_ab3705e0", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.miRNA-Seq.Tbm.hg38 C3L-00460 AML miRNA-Seq tumor_bone_marrow CPT0054420002 36ad3608-0b85-42d9-af68-65a437632a2f_mirnaseq_gdc_realn.bam 189740401 BAM harmonized CPTAC3 1ddaacb8-0ded-41c1-93f5-d5070a9f6984 447c4be6cb269a1e8b418aba1fc9baac {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.RNA-Seq.chimeric.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.chimeric.gdc_realn.bam 43407353 BAM chimeric harmonized CPTAC3 0d81ad10-8566-4031-a647-f5b6b2338a31 1407ccfced583853746d73e4955bb679 {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.RNA-Seq.genomic.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.genomic.gdc_realn.bam 9099967971 BAM genomic harmonized CPTAC3 b77f512e-c30a-453d-a900-8a7d2a94a45c b67cf63cc5ec9e51e27727745675ac6a {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.RNA-Seq.S7_L007_R1.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3602480988 FASTQ S7_L007_R1 unaligned CPTAC3 d5771179-7a98-4d85-aea4-eba182579f7f 27d1a72deef34885cf2594fec2aa37dd {"aliquot_tag": "ALQ_ab3705e0", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.RNA-Seq.S7_L007_R2.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3932864558 FASTQ S7_L007_R2 unaligned CPTAC3 dad7c54b-cfc7-44c4-887c-9804c31dbb37 071c5f4c748ec82aad8133fa91446e77 {"aliquot_tag": "ALQ_ab3705e0", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.RNA-Seq.transcriptome.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.transcriptome.gdc_realn.bam 8799287004 BAM transcriptome harmonized CPTAC3 6d9a5057-eaa5-44f2-9a5d-5eb66c7fefb0 32e30014824a5e8583a9567eaf19e49e {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.WGS.Nbc C3L-00460 AML WGS buccal_normal CPT0054450005 CPT0054450005.WholeGenome.RP-1303.bam 90462971647 BAM aligned CPTAC3 b9909725-552a-4ce8-a7a1-7f395d1b490a a3203c6819b6f7629af112db2f5eb353 {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00460.WGS.Nbc.hg38 C3L-00460 AML WGS buccal_normal CPT0054450005 36a133d1-3595-458b-bee7-074e8fde8f1a_gdc_realn.bam 145024505936 BAM harmonized CPTAC3 51d9eed2-d9fc-44cd-9bc3-dbe4a78c417e 89007bb4b0a423c96ca68a3ea4f2361e {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00460.WGS.Tbm C3L-00460 AML WGS tumor_bone_marrow CPT0054410002 CPT0054410002.WholeGenome.RP-1303.bam 62271791506 BAM aligned CPTAC3 d6b01114-9ea3-43d5-abad-09ee9ad8b4c7 72d79e7eb3f8f56423b00b76930bf6b6 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.WGS.Tbm.hg38 C3L-00460 AML WGS tumor_bone_marrow CPT0054410002 0b2f88a5-a90f-4487-b0fc-6c0a7ce74213_gdc_realn.bam 92646067441 BAM harmonized CPTAC3 fc54e75e-cafa-4100-90ee-f3aa654040dc e58f6d73d86b2b2c7bbdf96d19ba1509 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.WXS.Nbc C3L-00460 AML WXS buccal_normal CPT0054450005 CPT0054450005.WholeExome.RP-1303.bam 34875166864 BAM aligned CPTAC3 e0fcb8e7-3154-44c2-99b6-0b20478c9928 a9e0081586da48605c2b9dc4e730a090 {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00460.WXS.Nbc.hg38 C3L-00460 AML WXS buccal_normal CPT0054450005 36a133d1-3595-458b-bee7-074e8fde8f1a_gdc_realn.bam 47593333941 BAM harmonized CPTAC3 d4f13b45-e7dc-4e8e-bd9b-957ebdd22dbb 8d6885a1060abc056b6403e3617f73fb {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00460.WXS.Tbm C3L-00460 AML WXS tumor_bone_marrow CPT0054410002 CPT0054410002.WholeExome.RP-1303.bam 44072402866 BAM aligned CPTAC3 5b3ea394-6a70-4b57-8106-efe941084b64 9337b2d8ee404cef071ac7421b34b4a8 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00460.WXS.Tbm.hg38 C3L-00460 AML WXS tumor_bone_marrow CPT0054410002 0b2f88a5-a90f-4487-b0fc-6c0a7ce74213_gdc_realn.bam 60125770663 BAM harmonized CPTAC3 3eaa6c75-3173-4349-8bbf-7c0a75ddf28e 7772dc7dd3831bad1813ab954d35e1cd {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.ADD_5296f39b.WGS.Nbc C3L-00461 AML WGS buccal_normal CPT0054300005 CPT0054300005.WholeGenome.RP-1303.bam 66376106285 BAM aligned CPTAC3 36c2788d-a5c2-49fb-a0d4-2f16d55df5a5 8bf4427d1e15a067bea2419377289ea8 {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00461.ADD_5296f39b.WGS.Nbc.hg38 C3L-00461 AML WGS buccal_normal CPT0054300005 576f9144-e4c0-4138-8b3c-a0e9dc35b87b_wgs_gdc_realn.bam 107116441783 BAM harmonized CPTAC3 fd05b6b1-0ac6-4bf9-8489-4a6590c46cb5 a97dd43c0b926d9009f4fc4847b52071 {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00461.ADD_5296f39b.WXS.Nbc C3L-00461 AML WXS buccal_normal CPT0054300005 CPT0054300005.WholeExome.RP-1303.bam 42192603154 BAM aligned CPTAC3 574c9ffc-0c42-45f6-98b9-0f7555d0eba9 6b494fc6bd3a8dfcf3e9195b95d1f65b {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00461.ADD_5296f39b.WXS.Nbc.hg38 C3L-00461 AML WXS buccal_normal CPT0054300005 576f9144-e4c0-4138-8b3c-a0e9dc35b87b_wxs_gdc_realn.bam 57883503780 BAM harmonized CPTAC3 bc5676e8-5b55-4959-b3e1-ed55610fd3f7 6eac084253a115cb998030053ea7d715 {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00461.MethArray.Green.Tbm C3L-00461 AML Methylation_Array tumor_bone_marrow CPT0054280002 202234380017_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b0116221-69db-4d05-a928-c63be9a015b2 ccdfd82806c2d7d8e9203145680aa332 {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.MethArray.Red.Tbm C3L-00461 AML Methylation_Array tumor_bone_marrow CPT0054280002 202234380017_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 accde596-435d-4897-bc37-00d41910308c 393a61d318e18c0046b7a44824f921dc {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.miRNA-Seq.S23_L007_R1.Tbm C3L-00461 AML miRNA-Seq tumor_bone_marrow CPT0018430002 180724_UNC32-K00270_0106_BHWK3MBBXX_TCGGCA_S23_L007_R1_001.unaln.bam 216191451 BAM S23_L007_R1 unaligned CPTAC3 c31cc2f3-2aca-4e22-9684-01717cfef908 e149c178af8ca7887393e9bdb2348f5e {"aliquot_tag": "ALQ_d5bd48de", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.miRNA-Seq.Tbm.hg38 C3L-00461 AML miRNA-Seq tumor_bone_marrow CPT0018430002 ed2d3dba-77a9-4063-9210-7ccd3bd58c09_mirnaseq_gdc_realn.bam 224008004 BAM harmonized CPTAC3 e3d80b94-530b-479b-8381-b1bea3569618 874ed830aeed3bedde5eb8084370c980 {"aliquot_tag": "ALQ_d5bd48de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.WGS.Tbm C3L-00461 AML WGS tumor_bone_marrow CPT0054280002 CPT0054280002.WholeGenome.RP-1303.bam 67791828203 BAM aligned CPTAC3 059b3518-b86e-447c-8af6-4217dbdf9462 409b31fafa0e434d9b639912550ba8ca {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.WGS.Tbm.hg38 C3L-00461 AML WGS tumor_bone_marrow CPT0054280002 b29cabaf-9072-4b83-ac90-f8507e088796_wgs_gdc_realn.bam 99882759725 BAM harmonized CPTAC3 db50286b-5a53-4a87-90a5-d4d825b89908 bde4180f68d04b7c54762d8ffacebb5b {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.WXS.Tbm C3L-00461 AML WXS tumor_bone_marrow CPT0054280002 CPT0054280002.WholeExome.RP-1303.bam 32968059012 BAM aligned CPTAC3 e5172578-a4bf-4d8c-ad2c-7138e373ca00 adad845b22cdb0fa1ebd4a0795833edb {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00461.WXS.Tbm.hg38 C3L-00461 AML WXS tumor_bone_marrow CPT0054280002 b29cabaf-9072-4b83-ac90-f8507e088796_wxs_gdc_realn.bam 44943072114 BAM harmonized CPTAC3 6e0d1eac-125f-4681-b45d-726b67b3bce2 1e88739ee7e6495eccee4f6122942f91 {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.MethArray.Green.Tbm C3L-00465 AML Methylation_Array tumor_bone_marrow CPT0055020002 202178770045_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d09228fb-fceb-43c7-a773-5e31c0b61b85 20f4f9be41897fbf933cc89ce7190956 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.MethArray.Red.Tbm C3L-00465 AML Methylation_Array tumor_bone_marrow CPT0055020002 202178770045_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 46fc25ef-fec8-4b16-bb7d-ee312af388a8 779108c49bbeb2792832895f633470d6 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.miRNA-Seq.S36_L004_R1.Tbm C3L-00465 AML miRNA-Seq tumor_bone_marrow CPT0055050002 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L004_R1_001.unaln.bam 235671604 BAM S36_L004_R1 unaligned CPTAC3 d632cbcd-9f6c-46ab-b1ba-5b1640d46cf7 a6f04b061b4306f41fd717e38f0760ff {"aliquot_tag": "ALQ_24f19052", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.miRNA-Seq.Tbm.hg38 C3L-00465 AML miRNA-Seq tumor_bone_marrow CPT0055050002 ff44f7dc-b87c-4bdc-b53f-6504dfea6e27_mirnaseq_gdc_realn.bam 263974054 BAM harmonized CPTAC3 8d2c7576-d2dc-42f2-af38-ed35aedec990 7d3767d98aceeae461f419d02ef73af6 {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.RNA-Seq.chimeric.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.chimeric.gdc_realn.bam 55156691 BAM chimeric harmonized CPTAC3 9060661b-2d53-405e-bf85-e86b9b818d0f b15e8fc5beb50c97c80632469be90d59 {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.RNA-Seq.genomic.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.genomic.gdc_realn.bam 9886467188 BAM genomic harmonized CPTAC3 493b0c87-f3f4-47d2-a001-68e4714ba78e b02c677c740bd8cffa6bddc71618173c {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.RNA-Seq.S3_L007_R1.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R1_001.fastq.gz 3935574971 FASTQ S3_L007_R1 unaligned CPTAC3 c8af9b99-a55b-454f-a8fe-1804577dc952 378ffb032b41bc82dffac57022c5a364 {"aliquot_tag": "ALQ_24f19052", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.RNA-Seq.S3_L007_R2.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R2_001.fastq.gz 4372469194 FASTQ S3_L007_R2 unaligned CPTAC3 9ed627c4-2979-4ec1-80c6-b42bf6b79455 924609ab82ee0007af3ea966a6ce9ee0 {"aliquot_tag": "ALQ_24f19052", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.RNA-Seq.transcriptome.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.transcriptome.gdc_realn.bam 8917954549 BAM transcriptome harmonized CPTAC3 fe495860-df5c-4714-9af8-0ca843a63c23 b37beead8fd7b088cabbc1e2a30c3360 {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.WGS.Nbc C3L-00465 AML WGS buccal_normal CPT0055070005 CPT0055070005.WholeGenome.RP-1303.bam 82399325119 BAM aligned CPTAC3 2afc1b9d-df1e-4edf-9ae6-7a7810fa37e3 e93923f75c962db5e31423a7282bfd4d {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00465.WGS.Nbc.hg38 C3L-00465 AML WGS buccal_normal CPT0055070005 9abef38d-b25c-45ce-aafd-86137db0e665_gdc_realn.bam 123716099969 BAM harmonized CPTAC3 888bd4f0-4d76-40f5-be2b-30f4a3f60e30 9f0874cd903a23e0ad5537115dc64a65 {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00465.WGS.Tbm C3L-00465 AML WGS tumor_bone_marrow CPT0055020002 CPT0055020002.WholeGenome.RP-1303.bam 76742860275 BAM aligned CPTAC3 10135270-7616-4c7b-9ea0-111b8faccbb5 4837281ecd0d6ef7c86c573386ce87a6 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.WGS.Tbm.hg38 C3L-00465 AML WGS tumor_bone_marrow CPT0055020002 bffe3110-5cfa-4f93-aae6-4b6300a289ac_gdc_realn.bam 119753775158 BAM harmonized CPTAC3 895e1970-8cb8-4ee6-a9da-666945f7527f b6323d2bc2ebfe362009e8c65392bac4 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.WXS.Nbc C3L-00465 AML WXS buccal_normal CPT0055070005 CPT0055070005.WholeExome.RP-1303.bam 32479979357 BAM aligned CPTAC3 816e5258-d064-487c-b5b0-44313d962384 9f512833352df9f18ff981894f09cc55 {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00465.WXS.Nbc.hg38 C3L-00465 AML WXS buccal_normal CPT0055070005 9abef38d-b25c-45ce-aafd-86137db0e665_gdc_realn.bam 44175527892 BAM harmonized CPTAC3 c01f4ba5-1030-49c0-902d-fec56a504d15 0321a8ef48472290d451550c597bedcd {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00465.WXS.Tbm C3L-00465 AML WXS tumor_bone_marrow CPT0055020002 CPT0055020002.WholeExome.RP-1303.bam 33458872634 BAM aligned CPTAC3 713d72e0-5510-4708-b676-6dcb0ee17d3e 684b708f2f5dfe95cdf2c782e96a4672 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00465.WXS.Tbm.hg38 C3L-00465 AML WXS tumor_bone_marrow CPT0055020002 bffe3110-5cfa-4f93-aae6-4b6300a289ac_gdc_realn.bam 46542908295 BAM harmonized CPTAC3 027a8df9-637e-4bf3-a12c-9c1e38dfa923 a1f2e3b01c7950ee8fb366f2b47cb309 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00503.MethArray.Green.A C3L-00503 LSCC Methylation_Array tissue_normal CPT0083010005 203219650127_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8f9125d5-27c7-4d6a-821e-fd240388e3e0 41a7496b40f712dfb5f16774650d8bf2 {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.MethArray.Green.T C3L-00503 LSCC Methylation_Array tumor CPT0082970010 202176300111_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8e88fa6d-eea1-42dc-b8f2-79fcdc241a2b 04a6b345f6ba1a95e1a141bda1e3aa40 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor"} -C3L-00503.MethArray.Red.A C3L-00503 LSCC Methylation_Array tissue_normal CPT0083010005 203219650127_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 c3fabd1f-d2dc-4101-9292-0321471e954b 81e96c52d17f1933e53280f81e19505a {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.MethArray.Red.T C3L-00503 LSCC Methylation_Array tumor CPT0082970010 202176300111_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 fe892c4b-e5b4-4c84-8751-00e701a426ef 963e173744ad366df3510af95e601ad6 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor"} -C3L-00503.miRNA-Seq.A.hg38 C3L-00503 LSCC miRNA-Seq tissue_normal CPT0083010007 99c65475-b1a2-45d4-a7cf-7d3d1b4a2671_mirnaseq_gdc_realn.bam 290357523 BAM harmonized CPTAC3 fb27f02c-9b46-4683-8068-7c587b77280b 3cdfb15f22087647871573073bb9d487 {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.miRNA-Seq.S1_L005_R1.A C3L-00503 LSCC miRNA-Seq tissue_normal CPT0083010007 181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L005_R1_001.unaln.bam 253723491 BAM S1_L005_R1 unaligned CPTAC3 b5fcb190-14be-4aa6-ba9c-a66fd5a0c22c 2b3693f811c3812777b891f1454ab0ed {"aliquot_tag": "ALQ_59cee2f6", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.miRNA-Seq.S20_L001_R1.T C3L-00503 LSCC miRNA-Seq tumor CPT0082970007 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L001_R1_001.unaln.bam 171813239 BAM S20_L001_R1 unaligned CPTAC3 ef78e8d3-9ceb-4a4c-a7e0-1e2291d881ea a88df740c9af83ef9182254b37d6d9e0 {"aliquot_tag": "ALQ_57f64d2a", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00503.miRNA-Seq.T.hg38 C3L-00503 LSCC miRNA-Seq tumor CPT0082970007 b3582bbd-11e1-44c4-842a-47b2ad632d31_mirnaseq_gdc_realn.bam 194835662 BAM harmonized CPTAC3 bd228905-c785-4856-9a71-0542be612807 d89376a16632a8c1f997baa7bf1ac8c3 {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor"} -C3L-00503.RNA-Seq.chimeric.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.chimeric.gdc_realn.bam 27849690 BAM chimeric harmonized CPTAC3 8ea6a1e1-f88b-4986-ab93-fa4fbe37e43c 68df87a04183a590b6300ea057cc94d9 {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.RNA-Seq.chimeric.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.chimeric.gdc_realn.bam 55133432 BAM chimeric harmonized CPTAC3 ffe3618f-5580-40d3-af1d-69a26db75170 c034c1dc2c24209782f2dd994ad1a204 {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor"} -C3L-00503.RNA-Seq.genomic.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.genomic.gdc_realn.bam 7776632564 BAM genomic harmonized CPTAC3 190aee81-b1b9-45e8-ac1c-6fc86d7b1331 4c5e32953440d002172f5a56f5d1860a {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.RNA-Seq.genomic.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.genomic.gdc_realn.bam 9603932757 BAM genomic harmonized CPTAC3 38be4f0e-28b7-4d72-af5e-c9358f154683 65e4913dd2c42ba23e70f1a269699da7 {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor"} -C3L-00503.RNA-Seq.S3_L001_R1.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3728782598 FASTQ S3_L001_R1 unaligned CPTAC3 fdce22ee-161a-4432-ae86-7feb24ae101a 89beabaeca5f8f8e458eec0665ef9cd8 {"aliquot_tag": "ALQ_59cee2f6", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.RNA-Seq.S3_L001_R2.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3619344215 FASTQ S3_L001_R2 unaligned CPTAC3 6eb0643b-579d-457a-838a-81f9f2dc72b7 3b93b5ee5b591123c3206a2b2a99acd3 {"aliquot_tag": "ALQ_59cee2f6", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.RNA-Seq.S5_L002_R1.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3874576899 FASTQ S5_L002_R1 unaligned CPTAC3 d417ab83-b7a3-4d1f-a449-c5ef3dd1c622 39032deb230d45feb9f1b909f5bd0fd4 {"aliquot_tag": "ALQ_57f64d2a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00503.RNA-Seq.S5_L002_R2.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4268795449 FASTQ S5_L002_R2 unaligned CPTAC3 4cc1e5db-b9b9-4181-9e63-e1b63e9de28c b7ab28d7bf2f20160472bf5a3f7f83aa {"aliquot_tag": "ALQ_57f64d2a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00503.RNA-Seq.transcriptome.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.transcriptome.gdc_realn.bam 9565474829 BAM transcriptome harmonized CPTAC3 45f28a88-0173-45de-ac76-d39dc650c21f df62e49be7b5cc189ee9b428df299152 {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.RNA-Seq.transcriptome.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.transcriptome.gdc_realn.bam 10287037669 BAM transcriptome harmonized CPTAC3 189f7ecf-ede8-46c9-b3c9-3501642a72e6 cfe5a10a385bd04dd7641d3da802b98a {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor"} -C3L-00503.WGS.N C3L-00503 LSCC WGS blood_normal CPT0081750001 CPT0081750001.WholeGenome.RP-1303.bam 74321480641 BAM aligned CPTAC3 0667fd6a-6acf-4a08-9021-dc3eda87bede b044c4973c57e9efe0fc07d8939cc704 {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal"} -C3L-00503.WGS.N.hg38 C3L-00503 LSCC WGS blood_normal CPT0081750001 9b1d1a96-4652-4b71-961a-1159746b2e10_gdc_realn.bam 114729660774 BAM harmonized CPTAC3 a8b7beaf-0808-4e2b-99ad-4981c2fca5c7 701e74d59b43e7398f39a4c09a2d452a {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal"} -C3L-00503.WGS.T C3L-00503 LSCC WGS tumor CPT0082970010 CPT0082970010.WholeGenome.RP-1303.bam 66101775183 BAM aligned CPTAC3 9f4baf4d-a9b9-428e-b0d9-b72c5ee00c85 c29d63a82269762e45aaef59e28aabdf {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor"} -C3L-00503.WGS.T.hg38 C3L-00503 LSCC WGS tumor CPT0082970010 e7d164b4-6504-4434-b466-31771b0cb8b6_gdc_realn.bam 99428718346 BAM harmonized CPTAC3 bc77e602-348c-4658-870a-f7b48274f3fa 2e73f645bc54112b2273fcde93b0093f {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor"} -C3L-00503.WXS.A C3L-00503 LSCC WXS tissue_normal CPT0083010005 CPT0083010005.WholeExome.RP-1303.bam 34751381322 BAM aligned CPTAC3 7744d123-95cb-487c-98e3-ecdca7448a4e 2060b8fd0dfaa1caf18a9a4a8843ba7d {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.WXS.A.hg38 C3L-00503 LSCC WXS tissue_normal CPT0083010005 a6cc9c02-0015-4192-8c47-0205c3fcbd87_wxs_gdc_realn.bam 46472612815 BAM harmonized CPTAC3 55cfbc38-2c3e-4285-86f5-3cbf45961ae9 f139fba5fabeba843612924d65223b61 {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00503.WXS.N C3L-00503 LSCC WXS blood_normal CPT0081750001 CPT0081750001.WholeExome.RP-1303.bam 29547722174 BAM aligned CPTAC3 6c80638c-b611-42f0-81e0-2f5c8bdf930c 203213bb01791491d5fcc4f8d1421e96 {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal"} -C3L-00503.WXS.N.hg38 C3L-00503 LSCC WXS blood_normal CPT0081750001 9b1d1a96-4652-4b71-961a-1159746b2e10_gdc_realn.bam 40131980449 BAM harmonized CPTAC3 24b3b72d-c3cb-4dc9-96d2-3e8cf9230b52 2523576e12494509626d6de040890666 {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal"} -C3L-00503.WXS.T C3L-00503 LSCC WXS tumor CPT0082970010 CPT0082970010.WholeExome.RP-1303.bam 26560468225 BAM aligned CPTAC3 8648429a-cdb2-4366-8ecc-e8f579c3cbcf 1e6dd978629ce83894eafea533c17665 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor"} -C3L-00503.WXS.T.hg38 C3L-00503 LSCC WXS tumor CPT0082970010 e7d164b4-6504-4434-b466-31771b0cb8b6_gdc_realn.bam 36176673257 BAM harmonized CPTAC3 36693738-4fed-4e19-ad62-16391425c614 75a1f4f6101908766e81c527631b64f3 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor"} -C3L-00510.MethArray.Green.A C3L-00510 LUAD Methylation_Array tissue_normal CPT0011930009 203027390078_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ef0e40f7-131a-4cdf-a2cb-d2a2b838d129 56648d29c3bddc3dfbce4f94fe06ec14 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.MethArray.Green.T C3L-00510 LUAD Methylation_Array tumor CPT0011910007 202184990008_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5459d898-9b36-40a4-bf13-70429bc2552b e6c9ff8fc71bfbf33f7daad2485fd443 {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor"} -C3L-00510.MethArray.Red.A C3L-00510 LUAD Methylation_Array tissue_normal CPT0011930009 203027390078_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 1baceab8-4abe-4dd9-90fe-2e2ac7bec789 e92c3810160b9d4cfc142252a8dc93f7 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.MethArray.Red.T C3L-00510 LUAD Methylation_Array tumor CPT0011910007 202184990008_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 bab309b6-e5c1-44c3-a6dc-fc6195aca9b5 603af4b947be0761461c564b67c70c6b {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor"} -C3L-00510.miRNA-Seq.A.hg38 C3L-00510 LUAD miRNA-Seq tissue_normal CPT0011930006 fe02715c-f72b-4a74-b78c-9f29513e3270_mirnaseq_gdc_realn.bam 273923141 BAM harmonized CPTAC3 37240575-7ac8-40a1-a17a-b75f1564d780 11e636ae970ca05345adc359940d988e {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.miRNA-Seq.S31_L008_R1.A C3L-00510 LUAD miRNA-Seq tissue_normal CPT0011930006 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L008_R1_001.unaln.bam 248953041 BAM S31_L008_R1 unaligned CPTAC3 fa1d9bc7-5963-403c-9407-e7002bc3fccd 5ccf36772db9948b4bddb71a37da48d2 {"aliquot_tag": "ALQ_fbd6daca", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.miRNA-Seq.S37_L002_R1.T C3L-00510 LUAD miRNA-Seq tumor CPT0011910014 180924_UNC31-K00269_0154_AHWTMLBBXX_CATGGC_S37_L002_R1_001.unaln.bam 250673365 BAM S37_L002_R1 unaligned CPTAC3 cb332071-8079-410c-8e72-ac9da8a792a6 d2d56a0f13819829e5943f1218a5863c {"aliquot_tag": "ALQ_7603d9c7", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00510.miRNA-Seq.T.hg38 C3L-00510 LUAD miRNA-Seq tumor CPT0011910014 4ceda2f2-f727-4a1f-8adb-415fcc72cf77_mirnaseq_gdc_realn.bam 274000358 BAM harmonized CPTAC3 b9e883cb-d1d9-44ae-acf5-6d8fea09fabf 951cdb9b1843873234866d13f016cc84 {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor"} -C3L-00510.RNA-Seq.chimeric.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.chimeric.gdc_realn.bam 134699087 BAM chimeric harmonized CPTAC3 e15b954f-cd66-4f93-824f-193b5eb3aae4 40cc30efa0a61c315f34339e0a90afdc {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.RNA-Seq.chimeric.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.chimeric.gdc_realn.bam 48580010 BAM chimeric harmonized CPTAC3 d8045c48-181f-4a6f-b259-20fb48797068 f2626f87b4fbea73aeaec285d7bc5d1a {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor"} -C3L-00510.RNA-Seq.genomic.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.genomic.gdc_realn.bam 7142644479 BAM genomic harmonized CPTAC3 9d609eb1-ae04-4f60-8048-aae0e3d0063b ae6366f7d5a25c2d13435fd1af5f11ff {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.RNA-Seq.genomic.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.genomic.gdc_realn.bam 7658600162 BAM genomic harmonized CPTAC3 61e388dc-d8f4-419b-a322-4b42cf00ddb9 4935bab3d235911edfe676780189bff8 {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor"} -C3L-00510.RNA-Seq.S2_L001_R1.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R1_001.fastq.gz 3775735399 FASTQ S2_L001_R1 unaligned CPTAC3 3c707e3d-ecc0-4eb2-9041-0d7049f7051d 908163235aaa9f53d3bab3ca40f53da3 {"aliquot_tag": "ALQ_7603d9c7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00510.RNA-Seq.S2_L001_R2.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R2_001.fastq.gz 4003271781 FASTQ S2_L001_R2 unaligned CPTAC3 a47c1f9b-609e-4918-a421-2c0f025238f7 0aced7941cc0f05cc0a437609d04cc81 {"aliquot_tag": "ALQ_7603d9c7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00510.RNA-Seq.S6_L002_R1.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R1_001.fastq.gz 3384513131 FASTQ S6_L002_R1 unaligned CPTAC3 03153020-a522-499f-b21c-8f591e4deac1 c6976d5f53715f7e2b048c26ee8ab5f8 {"aliquot_tag": "ALQ_fbd6daca", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.RNA-Seq.S6_L002_R2.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R2_001.fastq.gz 3690033007 FASTQ S6_L002_R2 unaligned CPTAC3 bfd181a1-c5f3-40d6-946f-584b4640650a a8c2e98e7b3e2d1143e59a9e425dd1f7 {"aliquot_tag": "ALQ_fbd6daca", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.RNA-Seq.transcriptome.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.transcriptome.gdc_realn.bam 8863331752 BAM transcriptome harmonized CPTAC3 e1d26824-f324-43df-b4bd-98edaa4d6d68 1e646bdc453dd548d2fd4b1bb5923d9e {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.RNA-Seq.transcriptome.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.transcriptome.gdc_realn.bam 8999938425 BAM transcriptome harmonized CPTAC3 a87d08d4-d1ea-4068-a003-aaa3337836be aa198475277f85902e0e97996a36338a {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor"} -C3L-00510.WGS.A C3L-00510 LUAD WGS tissue_normal CPT0011930009 CPT0011930009.WholeGenome.RP-1303.bam 55555268188 BAM aligned CPTAC3 0f850a83-9853-463e-b9b9-446ddb348621 50f29aca0ca87deee5889fa1c6b924b3 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.WGS.A.hg38 C3L-00510 LUAD WGS tissue_normal CPT0011930009 5647908e-8c82-4887-94db-e88fc075275d_wgs_gdc_realn.bam 80931299818 BAM harmonized CPTAC3 ca505e15-fc37-4072-b93a-480d15d6916d 9c52c7fe93f6968886fe7c55cb85549e {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.WGS.N C3L-00510 LUAD WGS blood_normal CPT0012490002 CPT0012490002.WholeGenome.RP-1303.bam 78712776110 BAM aligned CPTAC3 dd65cb4b-21ad-484a-a9c8-fbf3670cc1e5 b675a1d199358165b8449dbe6a4b8fee {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal"} -C3L-00510.WGS.N.hg38 C3L-00510 LUAD WGS blood_normal CPT0012490002 7877dbfe-0f47-4f17-8415-bbf4fac43aaa_gdc_realn.bam 115533506100 BAM harmonized CPTAC3 fa23d9da-e01e-488e-88e0-b64662d57826 ca600ec549a4fea6e6e743d9fae2a816 {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal"} -C3L-00510.WGS.T C3L-00510 LUAD WGS tumor CPT0011910007 CPT0011910007.WholeGenome.RP-1303.bam 60524578079 BAM aligned CPTAC3 66628b07-a624-4b7a-82bf-3f815aacd3c0 8c0672d144d1187783402ef221c2636a {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor"} -C3L-00510.WGS.T.hg38 C3L-00510 LUAD WGS tumor CPT0011910007 20dda897-e9c3-4180-bfae-686cff203424_gdc_realn.bam 86288638462 BAM harmonized CPTAC3 31bcd733-1f6a-4ae3-afc5-9503cde6821c 34df04c4f84e69e527807bfb2cd602dc {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor"} -C3L-00510.WXS.A C3L-00510 LUAD WXS tissue_normal CPT0011930009 CPT0011930009.WholeExome.RP-1303.bam 35630782170 BAM aligned CPTAC3 edaac88e-215e-43d3-b9e6-45ca11b3aaf7 b985f7e2fb0f88ac9f8c9501410549dd {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.WXS.A.hg38 C3L-00510 LUAD WXS tissue_normal CPT0011930009 5647908e-8c82-4887-94db-e88fc075275d_wxs_gdc_realn.bam 48904670313 BAM harmonized CPTAC3 170c8f25-85fe-4a66-8d41-cb9926cbc679 6e2264fff1e9606bc423957272e66f83 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00510.WXS.N C3L-00510 LUAD WXS blood_normal CPT0012490002 CPT0012490002.WholeExome.RP-1303.bam 33099797995 BAM aligned CPTAC3 626c2c65-cab6-4e5a-8e98-305c3a01f6f8 77f4a4996f96d1295918d257fa8c0626 {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal"} -C3L-00510.WXS.N.hg38 C3L-00510 LUAD WXS blood_normal CPT0012490002 7877dbfe-0f47-4f17-8415-bbf4fac43aaa_gdc_realn.bam 44901361910 BAM harmonized CPTAC3 88a680ac-60b4-473d-8a36-60159a789e3b b6b26c345f0f79e4f5577ee1d4f247f4 {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal"} -C3L-00510.WXS.T C3L-00510 LUAD WXS tumor CPT0011910007 CPT0011910007.WholeExome.RP-1303.bam 22383880769 BAM aligned CPTAC3 6061da9a-f2ca-42e7-92d6-523084944f95 9c9136c8af2e6192a674983a1ec99ea6 {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor"} -C3L-00510.WXS.T.hg38 C3L-00510 LUAD WXS tumor CPT0011910007 20dda897-e9c3-4180-bfae-686cff203424_gdc_realn.bam 30787897783 BAM harmonized CPTAC3 86533b96-e67b-4406-a7ff-10cc4ae81b6a 0a5caf7392401abf7b931408e7262c6f {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor"} -C3L-00540.MethArray.Green.Tpb C3L-00540 AML Methylation_Array tumor_peripheral_blood CPT0100710002 203561450073_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2ce50e32-d0a1-4741-91aa-b35ea43e233f e3798f98440b81506a1224aecfb59d0c {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.MethArray.Red.Tpb C3L-00540 AML Methylation_Array tumor_peripheral_blood CPT0100710002 203561450073_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 33fe8b6c-3189-47bb-a451-bbd771af5f3f 8cd52e7acdb994155f4c036140b3c2e9 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.miRNA-Seq.S17_L001_R1.Tpb C3L-00540 AML miRNA-Seq tumor_peripheral_blood CPT0100720002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 160283483 BAM S17_L001_R1 unaligned CPTAC3 c17bc6d5-2127-401d-8b53-f1b3f2a13d00 2d15c543bc106fced059886415887022 {"aliquot_tag": "ALQ_8677497a", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.miRNA-Seq.Tpb.hg38 C3L-00540 AML miRNA-Seq tumor_peripheral_blood CPT0100720002 2c428451-78bd-4dc5-9ea6-309e8635838b_mirnaseq_gdc_realn.bam 180745404 BAM harmonized CPTAC3 27e21ccd-54f9-4487-bf6d-c1d9932efb40 a03bce595bafd85f81a52cde31fa62e6 {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.RNA-Seq.chimeric.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.chimeric.gdc_realn.bam 19356422 BAM chimeric harmonized CPTAC3 bebfd95a-2c70-4a97-bfa2-1d69eb4380a8 8591fd90f61aacd265bd743d357d0da4 {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.RNA-Seq.genomic.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.genomic.gdc_realn.bam 18800119622 BAM genomic harmonized CPTAC3 deab4d03-2e34-4813-8b83-371814281496 b9bdb9fd6c7955a4e906976b19d2ec0c {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.RNA-Seq.S36_L006_R1.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R1_001.fastq.gz 4580057381 FASTQ S36_L006_R1 unaligned CPTAC3 41832e8e-3b03-4d30-9712-f64608fcbc7d ca3f2a03f31ced8dd5b08c0af9b3fe55 {"aliquot_tag": "ALQ_8677497a", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.RNA-Seq.S36_L006_R2.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R2_001.fastq.gz 5231080146 FASTQ S36_L006_R2 unaligned CPTAC3 132a48bf-35fb-44f6-b5c3-e3ca27975431 bbf27a139ae0d3a05f6ce52332b53b56 {"aliquot_tag": "ALQ_8677497a", "sample": "S36", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.RNA-Seq.transcriptome.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.transcriptome.gdc_realn.bam 8988812424 BAM transcriptome harmonized CPTAC3 bcbf0136-93a9-44fe-a0dd-fb22b0995789 ba730093c6247f8cd0b7062fa8cb0a21 {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.WGS.Tpb C3L-00540 AML WGS tumor_peripheral_blood CPT0100710002 CPT0100710002.WholeGenome.RP-1303.bam 24415754014 BAM aligned CPTAC3 927912f8-65b3-4c01-a1f9-6352e835c5f0 ca59651a3efb3ed8d85899900d370851 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.WGS.Tpb.hg38 C3L-00540 AML WGS tumor_peripheral_blood CPT0100710002 3b978803-576d-458a-8e00-13b5e8935843_wgs_gdc_realn.bam 34323783240 BAM harmonized CPTAC3 6016e946-78ca-4212-b063-bc3a8556f11b e256fb3c89709c597b5eb90bf802c510 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.WXS.Nbc C3L-00540 AML WXS buccal_normal CPT0100630003 CPT0100630003.WholeExome.RP-1303.bam 16868710548 BAM aligned CPTAC3 181d72d8-36f3-40ae-8408-7f6e0b5efd18 b6fae0edeeac9d30ece4110c4bdd1870 {"aliquot_tag": "ALQ_74c83f9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00540.WXS.Nbc.hg38 C3L-00540 AML WXS buccal_normal CPT0100630003 f38bdb88-5103-4d22-9436-f9bb77ba3116_wxs_gdc_realn.bam 23807500097 BAM harmonized CPTAC3 da611fd3-6c53-4152-bf2e-4a6a4e9a9f0a f01b49874ca73ead0391d76176310450 {"aliquot_tag": "ALQ_74c83f9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00540.WXS.Tpb C3L-00540 AML WXS tumor_peripheral_blood CPT0100710002 CPT0100710002.WholeExome.RP-1303.bam 24415754086 BAM aligned CPTAC3 036a121a-3650-4a19-a32d-cc871e3265c0 f0d15cf016bd9d63659effd6447389ac {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00540.WXS.Tpb.hg38 C3L-00540 AML WXS tumor_peripheral_blood CPT0100710002 3b978803-576d-458a-8e00-13b5e8935843_wxs_gdc_realn.bam 34586447706 BAM harmonized CPTAC3 33fcee4a-7bcd-4297-8a60-c904b60d0542 67f7ca5b82d49b786fd3edeb18d2bba7 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00561.MethArray.Green.T C3L-00561 CCRCC Methylation_Array tumor CPT0023350006 202184900140_R02C01_Grn.idat 13676261 IDAT Green NA CPTAC3 6a449a68-6568-4331-aa40-07d61408e374 12ae8ca83477a8617d61b8c35a8f1142 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor"} -C3L-00561.MethArray.Red.T C3L-00561 CCRCC Methylation_Array tumor CPT0023350006 202184900140_R02C01_Red.idat 13676261 IDAT Red NA CPTAC3 698f9174-e7e5-49f5-b5c5-5e67606eb616 ab669f65ab463858b4675266c6c5aa4b {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor"} -C3L-00561.miRNA-Seq.A.hg38 C3L-00561 CCRCC miRNA-Seq tissue_normal CPT0023360006 703aaad7-3056-4938-8099-108b6679ded4_mirnaseq_gdc_realn.bam 186189265 BAM harmonized CPTAC3 1908b205-c6a2-4b4f-8dc0-54a68f8560cb aacfdc9c6e9d56cd0e83a9fabc1efbcf {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.miRNA-Seq.S3_L003_R1.A C3L-00561 CCRCC miRNA-Seq tissue_normal CPT0023360006 181108_UNC31-K00269_0163_BH23TVBBXY_TTAGGC_S3_L003_R1_001.unaln.bam 165292329 BAM S3_L003_R1 unaligned CPTAC3 c1dedacc-cc33-41f8-996d-82ec5ac834b5 0e34dc2eec5a25ab282e69472b5a788a {"aliquot_tag": "ALQ_8bbd6016", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.miRNA-Seq.S43_L005_R1.T C3L-00561 CCRCC miRNA-Seq tumor CPT0023350009 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L005_R1_001.unaln.bam 183643474 BAM S43_L005_R1 unaligned CPTAC3 41b3c438-10a6-42ce-8f03-ca4d0953b6fb 0e2edbfb7070c584f406931e6265b5da {"aliquot_tag": "ALQ_5ca20757", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00561.miRNA-Seq.T.hg38 C3L-00561 CCRCC miRNA-Seq tumor CPT0023350009 da873fe0-1299-471c-9020-c61bd9b507dd_mirnaseq_gdc_realn.bam 200454944 BAM harmonized CPTAC3 07a0ae4d-ea22-4879-a010-3605fa3c7f7f 11949b57e842c347001845945ae1f260 {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor"} -C3L-00561.RNA-Seq.chimeric.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.chimeric.gdc_realn.bam 64741239 BAM chimeric harmonized CPTAC3 d291e3a8-e7e1-441e-947a-4ec27cadec6c b8ee9a0e30cfc3b2d1f868e45e0d28c1 {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.RNA-Seq.chimeric.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.chimeric.gdc_realn.bam 123801852 BAM chimeric harmonized CPTAC3 44c95e41-f49c-46dd-bab2-5e177164b2be 57aa2c81e55248fba47cdc1245ec2ad2 {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor"} -C3L-00561.RNA-Seq.genomic.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.genomic.gdc_realn.bam 6796733061 BAM genomic harmonized CPTAC3 3f107234-dc11-4e96-ab7c-07af9204b58c 6b5f87edce1a6696edbe8c6459cc60af {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.RNA-Seq.genomic.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.genomic.gdc_realn.bam 7758350409 BAM genomic harmonized CPTAC3 947fbc52-5128-471f-b4e4-b243b1f7b92a 7a0b24d455c200c5b92e7f79d3b0f35b {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor"} -C3L-00561.RNA-Seq.S19_L007_R1.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R1_001.fastq.gz 4208571272 FASTQ S19_L007_R1 unaligned CPTAC3 35c6b8a4-6a15-4e50-9dab-da1c77c77c74 5b4571cb31d8e1f3d58826b348cc03ca {"aliquot_tag": "ALQ_5ca20757", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00561.RNA-Seq.S19_L007_R2.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R2_001.fastq.gz 4515097532 FASTQ S19_L007_R2 unaligned CPTAC3 cf3c559c-9edf-464a-984b-14d4977ccfe5 bb0f5c6431281e22093fe58eca15971e {"aliquot_tag": "ALQ_5ca20757", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00561.RNA-Seq.S4_L006_R1.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R1_001.fastq.gz 3268340762 FASTQ S4_L006_R1 unaligned CPTAC3 a3b123c4-9bdf-44b7-86b9-018ce64c95bb f5d04d063edde8bf5afc6fb9e030008a {"aliquot_tag": "ALQ_8bbd6016", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.RNA-Seq.S4_L006_R2.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R2_001.fastq.gz 3686578827 FASTQ S4_L006_R2 unaligned CPTAC3 1a515eb3-e212-43d9-8bd4-89e3c259bf3a d40ac1112c80cbb189d650768a82d929 {"aliquot_tag": "ALQ_8bbd6016", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.RNA-Seq.transcriptome.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.transcriptome.gdc_realn.bam 8335079307 BAM transcriptome harmonized CPTAC3 e4657a9e-70c1-44ac-8fbe-46915b3808c2 e798e7405455d6bf9c131b83abb1aeba {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.RNA-Seq.transcriptome.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.transcriptome.gdc_realn.bam 11606147516 BAM transcriptome harmonized CPTAC3 1e587d74-506e-4c84-a0fa-67442580fff7 b0957fd7750031629048e0a4340d9d54 {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor"} -C3L-00561.WGS.A C3L-00561 CCRCC WGS tissue_normal CPT0023360009 CPT0023360009.WholeGenome.RP-1303.bam 55449726555 BAM aligned CPTAC3 ef4150b5-203a-4eeb-b181-fc68cbc07714 0c7772c8c0524ec928e6f21c6970baec {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.WGS.A.hg38 C3L-00561 CCRCC WGS tissue_normal CPT0023360009 499db071-21c6-4e62-afb1-ab7b3b3f3d31_wgs_gdc_realn.bam 80272829983 BAM harmonized CPTAC3 19d99b83-9a48-40a8-ae3e-f387ebe4afa6 ecaa57e34fd8f69d364913abbe6db0b8 {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.WGS.N C3L-00561 CCRCC WGS blood_normal CPT0024550002 CPT0024550002.WholeGenome.RP-1303.bam 64950026176 BAM aligned CPTAC3 b29460eb-4c2d-4873-8b20-364cb4777b63 8fc1b3a383d6d9d39bab31ad18cf0885 {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00561.WGS.N.hg38 C3L-00561 CCRCC WGS blood_normal CPT0024550002 a54a0716-5554-41b5-8adf-70c76dedf8b7_gdc_realn.bam 93221503329 BAM harmonized CPTAC3 e75e68a9-7ea6-43b9-8da1-6a01f05acea8 91d1a5f9a07cfcb554d122c8055efadb {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00561.WGS.T C3L-00561 CCRCC WGS tumor CPT0023350006 CPT0023350006.WholeGenome.RP-1303.bam 61636129321 BAM aligned CPTAC3 b20f3266-d35b-4167-ab15-15b6bf8c1664 a9f13ed21f67a042713030e98a9596c0 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor"} -C3L-00561.WGS.T.hg38 C3L-00561 CCRCC WGS tumor CPT0023350006 56a6a879-3a4e-4e3b-a002-98c8be88c245_gdc_realn.bam 90244243768 BAM harmonized CPTAC3 44b4ef6c-47a3-485b-90b0-713dcc1c6e33 265272f69876b8d7acbdd8b9d2f9343e {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor"} -C3L-00561.WXS.A C3L-00561 CCRCC WXS tissue_normal CPT0023360009 CPT0023360009.WholeExome.RP-1303.bam 43546071810 BAM aligned CPTAC3 bc2f4062-00e3-4cfe-84ca-5bf1a33a31ff 32f49e6c6bf9d09252cbb15e88ba5198 {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.WXS.A.hg38 C3L-00561 CCRCC WXS tissue_normal CPT0023360009 499db071-21c6-4e62-afb1-ab7b3b3f3d31_wxs_gdc_realn.bam 59155317587 BAM harmonized CPTAC3 438208b8-38c6-4ef2-b2d3-f77098109a4f 007ea0fb7432fe89601d0134f9b295d9 {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00561.WXS.N C3L-00561 CCRCC WXS blood_normal CPT0024550002 CPT0024550002.WholeExome.RP-1303.bam 23648121454 BAM aligned CPTAC3 72aea9dd-43e4-4bb0-b5a4-8233be4e04e9 225da16baa1f88f0b2baea22d6138cd7 {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00561.WXS.N.hg38 C3L-00561 CCRCC WXS blood_normal CPT0024550002 a54a0716-5554-41b5-8adf-70c76dedf8b7_gdc_realn.bam 32241698422 BAM harmonized CPTAC3 17be3adb-c798-4e88-a32d-ee6614b361fb 03002a0b2d8040d1a348148cada04ead {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00561.WXS.T C3L-00561 CCRCC WXS tumor CPT0023350006 CPT0023350006.WholeExome.RP-1303.bam 23775960193 BAM aligned CPTAC3 1a92ed12-f911-47f9-873d-d7a2d9dea36d 281b461c4818e2de8aa9e09f636e6175 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor"} -C3L-00561.WXS.T.hg38 C3L-00561 CCRCC WXS tumor CPT0023350006 56a6a879-3a4e-4e3b-a002-98c8be88c245_gdc_realn.bam 32671779408 BAM harmonized CPTAC3 51b0205f-d289-4913-981d-e9cb6cc31cb6 c910fa9f3e6d760c4f2814c5b3fbc526 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor"} -C3L-00563.MethArray.Green.T C3L-00563 UCEC Methylation_Array tumor CPT0063250009 202184900105_R07C01_Grn.idat 13676222 IDAT Green NA CPTAC3 d1468514-1755-4401-b8b1-e619e09ff1cd 1c93fa4311ccfddfca3b6cc1c3797b03 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor"} -C3L-00563.MethArray.Red.T C3L-00563 UCEC Methylation_Array tumor CPT0063250009 202184900105_R07C01_Red.idat 13676222 IDAT Red NA CPTAC3 ee07481c-bd3c-49f1-b4e8-381958faefce 91f7854ee4ef58bb34129fdcfde5cdb0 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor"} -C3L-00563.miRNA-Seq.S16_L003_R1.T C3L-00563 UCEC miRNA-Seq tumor CPT0063250006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGTCA_S16_L003_R1_001.unaln.bam 231283210 BAM S16_L003_R1 unaligned CPTAC3 827f6a12-1cf5-4cd1-a7b8-d3f89ee207d5 d5c47f139f72f8d6af5a507f93fb2544 {"aliquot_tag": "ALQ_830bc799", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00563.miRNA-Seq.T.hg38 C3L-00563 UCEC miRNA-Seq tumor CPT0063250006 5bf7c495-ea4a-47fc-8de1-f5692ef9e25d_mirnaseq_gdc_realn.bam 254741872 BAM harmonized CPTAC3 a53fc6c7-56a1-45b6-9e40-4446042cedbb aaf8a80e04d872c5251d088906e91ea5 {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.chimeric.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.chimeric.gdc_realn.bam 33591624 BAM chimeric harmonized CPTAC3 48d674db-e9bb-4fd0-82e6-55647a1c58eb 42761b6ce036ae8185edea3ef7543501 {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.chimeric.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.chimeric.gdc_realn.bam 288454715 BAM chimeric harmonized CPTAC3 b8f7920b-6b31-46ba-b5c6-df90676c0a66 3e7889f020a367fa88d9cb82eeccd63d {"aliquot_tag": "ALQ_5a9a280f", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.genomic.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.genomic.gdc_realn.bam 9578391817 BAM genomic harmonized CPTAC3 8f691e22-deb4-4e9e-ad1b-6654b9e5be17 ca99b4f200e8be4a0a80cae5b02215c9 {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.genomic.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.genomic.gdc_realn.bam 10763665344 BAM genomic harmonized CPTAC3 214f3768-2ea5-45ee-b754-8380e36c49f5 22485f5319509772a89accd39f4eb7cd {"aliquot_tag": "ALQ_5a9a280f", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.S14_R1.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R1_001.fastq.gz 6381253574 FASTQ S14_R1 unaligned CPTAC3 fecefe79-a533-43c0-b94b-876fcc3a85d9 81ccaafbab86f7a848461e09c4557b02 {"aliquot_tag": "ALQ_5a9a280f", "sample": "S14", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.S14_R2.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R2_001.fastq.gz 6502247363 FASTQ S14_R2 unaligned CPTAC3 01efb671-0dd5-48a9-9deb-54713c876e19 6aaa05f572f1a551cc8228afe0a3e83b {"aliquot_tag": "ALQ_5a9a280f", "sample": "S14", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.S7_L002_R1.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4620585758 FASTQ S7_L002_R1 unaligned CPTAC3 8b076b0a-e1a0-4215-ab01-2aa7e0a0d947 881f23dce41beb2fad34eb3e77d7a032 {"aliquot_tag": "ALQ_830bc799", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.S7_L002_R2.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4894573355 FASTQ S7_L002_R2 unaligned CPTAC3 9c892a88-3d18-4757-8c0c-ae75966102c7 62a29338ac7805962ae73a94c7b29a72 {"aliquot_tag": "ALQ_830bc799", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.transcriptome.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.transcriptome.gdc_realn.bam 10986344753 BAM transcriptome harmonized CPTAC3 08a9a1cc-ab3b-4be9-8a92-ae1211a50b2e 395a1f81a3af168fbcd55a1e1acc2cfd {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor"} -C3L-00563.RNA-Seq.transcriptome.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.transcriptome.gdc_realn.bam 6486101873 BAM transcriptome harmonized CPTAC3 c0c95b71-f700-4106-b2d5-5f45410877b4 074d638c8f067db1a167f6493d215a84 {"aliquot_tag": "ALQ_5a9a280f", "gdc_sample_type": "Primary Tumor"} -C3L-00563.WGS.N C3L-00563 UCEC WGS blood_normal CPT0065230002 CPT0065230002.WholeGenome.RP-1303.bam 68342694247 BAM aligned CPTAC3 11a6ba88-8c79-4c97-9661-341fd024746d de9088aabfacb8543f8a4bcf797838d6 {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00563.WGS.N.hg38 C3L-00563 UCEC WGS blood_normal CPT0065230002 f38738f1-ed43-4824-9c84-b23a66d122b2_gdc_realn.bam 102537189019 BAM harmonized CPTAC3 611aab51-5e8b-42a5-a07c-0f263c5b99cb 4158eb5a091433e280d999c30ce8ab34 {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00563.WGS.T C3L-00563 UCEC WGS tumor CPT0063250009 CPT0063250009.WholeGenome.RP-1303.bam 69042667663 BAM aligned CPTAC3 ea8c25ae-f685-4c9d-89b0-a74524e05571 03ce3a253ecb03df2a424fe8b76f5f6b {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor"} -C3L-00563.WGS.T.hg38 C3L-00563 UCEC WGS tumor CPT0063250009 e1743cdd-69f2-4643-810d-4f1c677560ac_gdc_realn.bam 105011002665 BAM harmonized CPTAC3 8135d8d2-1d84-43d2-ac41-4eec5cebb607 d6b141c6e2d074a87aa9278d9c45ded9 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor"} -C3L-00563.WXS.N C3L-00563 UCEC WXS blood_normal CPT0065230002 CPT0065230002.WholeExome.RP-1303.bam 34317449990 BAM aligned CPTAC3 448749b6-0e8b-453a-9ba9-5a1cc5e29180 80055f93af783c1c228f40b9d2b4329a {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00563.WXS.N.hg38 C3L-00563 UCEC WXS blood_normal CPT0065230002 f38738f1-ed43-4824-9c84-b23a66d122b2_gdc_realn.bam 46328877788 BAM harmonized CPTAC3 f80735d2-6a7e-4d58-965d-5b3b48520bd0 125c42c32209217978d7e1f1fa4120cd {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00563.WXS.T C3L-00563 UCEC WXS tumor CPT0063250009 CPT0063250009.WholeExome.RP-1303.bam 33371397481 BAM aligned CPTAC3 b420d0ad-d133-4c1a-8506-5dffabc3e722 7eb15fec58320f750bc8536f6fc3d708 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor"} -C3L-00563.WXS.T.hg38 C3L-00563 UCEC WXS tumor CPT0063250009 e1743cdd-69f2-4643-810d-4f1c677560ac_gdc_realn.bam 45947584973 BAM harmonized CPTAC3 1b3536a2-9329-4dd7-a180-fdeb3e6c96e8 1e9daff48ca7dfe3b820229f6b14b650 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor"} -C3L-00568.MethArray.Green.A C3L-00568 LSCC Methylation_Array tissue_normal CPT0023500006 203219650100_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a1304bb1-cc76-4935-b76c-c0707fd6194f 242f661acd7b35e5e3d5021ea5778b7d {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.MethArray.Green.T C3L-00568 LSCC Methylation_Array tumor CPT0023470005 202176290145_R06C01_Grn.idat 13676225 IDAT Green NA CPTAC3 bc833d31-8ebd-4e77-9d4b-4662f3bc9a94 da9d5c713db3098f8b57138cbdaf145b {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor"} -C3L-00568.MethArray.Red.A C3L-00568 LSCC Methylation_Array tissue_normal CPT0023500006 203219650100_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 1f498546-aa3b-49d6-bd3b-d0b2514e6b58 f18aac379b6282f5a9de293a931bb35d {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.MethArray.Red.T C3L-00568 LSCC Methylation_Array tumor CPT0023470005 202176290145_R06C01_Red.idat 13676225 IDAT Red NA CPTAC3 05229768-3047-4534-9de8-5ee2dcb7042c 02c2dcdc2e8d57bdfd4e50c317256ae9 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor"} -C3L-00568.miRNA-Seq.A.hg38 C3L-00568 LSCC miRNA-Seq tissue_normal CPT0023500009 33fb55c9-595d-4f68-b22d-79de99024037_mirnaseq_gdc_realn.bam 281134392 BAM harmonized CPTAC3 ae82e0ff-a25f-4463-97b1-58172bc4a381 2383d36c3d2e5695ed12693b95cd545a {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.miRNA-Seq.S1_L005_R1.T C3L-00568 LSCC miRNA-Seq tumor CPT0023470008 181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L005_R1_001.unaln.bam 228797197 BAM S1_L005_R1 unaligned CPTAC3 0ff60bec-6090-4e8c-b3b5-9c59ecc2dbc7 0684987aba1ef1df26eacae355de3d81 {"aliquot_tag": "ALQ_4c605419", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00568.miRNA-Seq.S41_L006_R1.A C3L-00568 LSCC miRNA-Seq tissue_normal CPT0023500009 181113_UNC31-K00269_0164_AH23NNBBXY_GTAGAG_S41_L006_R1_001.unaln.bam 254305543 BAM S41_L006_R1 unaligned CPTAC3 e8c1a0b6-13b1-481d-b53a-60ea5f9b18b0 bdd8127f8428c519fa41cf832289f34d {"aliquot_tag": "ALQ_421b6b3a", "sample": "S41", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.miRNA-Seq.T.hg38 C3L-00568 LSCC miRNA-Seq tumor CPT0023470008 6325c528-6915-40af-8fa1-f335b0ea1ad4_mirnaseq_gdc_realn.bam 260349419 BAM harmonized CPTAC3 e4a20327-e551-45d8-88da-5fd4c0451cb6 03c922198ccf49b529d3c0952b790c55 {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor"} -C3L-00568.RNA-Seq.chimeric.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.chimeric.gdc_realn.bam 27407910 BAM chimeric harmonized CPTAC3 71b7c70d-ce05-4912-aefb-fbe6c5df702f 875478df05ee5304c8e4eebaddbc5c0d {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.RNA-Seq.chimeric.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.chimeric.gdc_realn.bam 58041655 BAM chimeric harmonized CPTAC3 818715f1-43a0-4194-9328-e9b1665b7a18 0062ff6068fe03a6c057501c0042572b {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor"} -C3L-00568.RNA-Seq.genomic.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.genomic.gdc_realn.bam 9430125143 BAM genomic harmonized CPTAC3 a0d2d1b1-95fe-4a10-aee6-58c222acb979 46fa876edc1e78b3a9dc328f881d6816 {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.RNA-Seq.genomic.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.genomic.gdc_realn.bam 8397048862 BAM genomic harmonized CPTAC3 50db6d69-1727-4ee7-9eda-666507fa16c4 099a00d93fff3b6e5958625f018ba9a2 {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor"} -C3L-00568.RNA-Seq.S13_L008_R1.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R1_001.fastq.gz 3525236638 FASTQ S13_L008_R1 unaligned CPTAC3 703dcfe1-5b06-436f-aa6e-95e945ee9dcc 87b722d04c56b1ed8eef9478625780d4 {"aliquot_tag": "ALQ_4c605419", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00568.RNA-Seq.S13_L008_R2.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R2_001.fastq.gz 3776890380 FASTQ S13_L008_R2 unaligned CPTAC3 0bbd7e2e-fdaf-4465-bfa2-a40946256805 8dee08deb306bce2cea8ad97681ba060 {"aliquot_tag": "ALQ_4c605419", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00568.RNA-Seq.S9_L003_R1.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3555174352 FASTQ S9_L003_R1 unaligned CPTAC3 71964440-fe3e-4d98-aa81-e03b1f107ef2 76794c2f107aa1eb16ba872ac0fffe92 {"aliquot_tag": "ALQ_421b6b3a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.RNA-Seq.S9_L003_R2.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 3943839493 FASTQ S9_L003_R2 unaligned CPTAC3 799d7ef2-c594-44cd-93c5-d2644bd53034 7113549fca3d9cf138970e6f58228e4e {"aliquot_tag": "ALQ_421b6b3a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.RNA-Seq.transcriptome.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.transcriptome.gdc_realn.bam 9985252039 BAM transcriptome harmonized CPTAC3 230a5b13-aa7d-41a0-8c2d-271dd756dbdc 0e99a2700182e0c2df64496de782aa6e {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.RNA-Seq.transcriptome.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.transcriptome.gdc_realn.bam 8580749282 BAM transcriptome harmonized CPTAC3 b6ffeac0-dda0-4c75-ac76-51ad91274ec9 423eeb9b141108ada0453538bc3ac3a1 {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor"} -C3L-00568.WGS.A C3L-00568 LSCC WGS tissue_normal CPT0023500006 CPT0023500006.WholeGenome.RP-1303.bam 64731420005 BAM aligned CPTAC3 0b36ee5f-f074-4c5e-97f4-5f9b34419934 d928805e2ee42655312c67a50eef1658 {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.WGS.A.hg38 C3L-00568 LSCC WGS tissue_normal CPT0023500006 d6197e35-b862-4f90-8986-af1a6450b2f7_wgs_gdc_realn.bam 94810014779 BAM harmonized CPTAC3 aa870c2e-837e-4013-9eee-19a1c23bb28c ecbd0feec22737596095a7e17a6735aa {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.WGS.N C3L-00568 LSCC WGS blood_normal CPT0024570002 CPT0024570002.WholeGenome.RP-1303.bam 73714295706 BAM aligned CPTAC3 24c44882-146f-45a2-a14d-e96eb5a1aff1 57c47a4ffc5e072a1aba6e836144cce1 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00568.WGS.N.hg38 C3L-00568 LSCC WGS blood_normal CPT0024570002 556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 109357855846 BAM harmonized CPTAC3 a1415e5d-d67b-494a-9bc7-f2b1d7548803 4f51a92b8c4ad53bc5314c8f64cd8334 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00568.WGS.T C3L-00568 LSCC WGS tumor CPT0023470005 CPT0023470005.WholeGenome.RP-1303.bam 57803688645 BAM aligned CPTAC3 ff179454-3c74-4a74-8dae-3ee73051c277 e7858b497206e6284f3dc47a2d37186d {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor"} -C3L-00568.WGS.T.hg38 C3L-00568 LSCC WGS tumor CPT0023470005 a5b555c2-cf25-4110-829e-6d4d6ba23e1e_gdc_realn.bam 85102392288 BAM harmonized CPTAC3 53d1bac2-cd1f-4a52-919a-088825cfb7af 97e21c17a8e9d27063b2e357ebaae545 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor"} -C3L-00568.WXS.A C3L-00568 LSCC WXS tissue_normal CPT0023500006 CPT0023500006.WholeExome.RP-1303.bam 28375576199 BAM aligned CPTAC3 eb7e3821-9f2d-4f3f-861c-776a3018df2a 541b6a876984507ba85be55ff75ea5a7 {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.WXS.A.hg38 C3L-00568 LSCC WXS tissue_normal CPT0023500006 d6197e35-b862-4f90-8986-af1a6450b2f7_wxs_gdc_realn.bam 37682193705 BAM harmonized CPTAC3 83a5b91e-7e86-49c9-aa73-50784d8d6ed3 8c9a5a66438e7d1fc78be08ed40f75c3 {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00568.WXS.N C3L-00568 LSCC WXS blood_normal CPT0024570002 CPT0024570002.WholeExome.RP-1303.bam 38919555209 BAM aligned CPTAC3 593bd2b5-cfc7-48b3-8e38-f457c96c23c3 4002a601da48b450aa04adb728b9f4e1 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00568.WXS.N.hg38 C3L-00568 LSCC WXS blood_normal CPT0024570002 556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 53080986015 BAM harmonized CPTAC3 63c3f570-84a2-4548-b619-ed7c70a38485 3572184dff437eec1195f7b9fbd55979 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00568.WXS.T C3L-00568 LSCC WXS tumor CPT0023470005 CPT0023470005.WholeExome.RP-1303.bam 42088904861 BAM aligned CPTAC3 7cc564c8-c20d-4b7e-8725-d497e149861c 5484c0ae748cbaac7b0d6ebe11df88a3 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor"} -C3L-00568.WXS.T.hg38 C3L-00568 LSCC WXS tumor CPT0023470005 a5b555c2-cf25-4110-829e-6d4d6ba23e1e_gdc_realn.bam 58982752050 BAM harmonized CPTAC3 8aa9bbda-91e8-44b1-aa01-0fd1c7cbef5f 89172bc01d20e9f3026b6664b76bc132 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_24db241.MethArray.Green.T C3L-00581 CCRCC Methylation_Array tumor CPT0007410009 204367490057_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 3a4c98c1-7bee-4735-bcb6-036effb9b606 335ec5ab5d52d74df30b93dc727d1987 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_24db241.MethArray.Red.T C3L-00581 CCRCC Methylation_Array tumor CPT0007410009 204367490057_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 678db087-bb05-44d4-893b-f02b46919fd2 edb1132b92f987f8baf961f8b7efb072 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_24db241.WGS.T C3L-00581 CCRCC WGS tumor CPT0007410009 CPT0007410009.WholeGenome.RP-2158.bam 26433659406 BAM aligned CPTAC3 4c113f9d-141a-4c10-807f-02498628d588 27692332388750e2a516bf0397c85c7a {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_24db241.WGS.T.hg38 C3L-00581 CCRCC WGS tumor CPT0007410009 0701a048-fa71-42c0-853d-329a0d5aa4f1_wgs_gdc_realn.bam 80105203428 BAM harmonized CPTAC3 e803e3c2-a5f5-43d7-983f-f0bb647cf2f8 439af0ba49e1adf98c4b99d47967e495 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_24db241.WXS.T C3L-00581 CCRCC WXS tumor CPT0007410009 CPT0007410009.WholeExome.RP-1303.bam 47988304333 BAM aligned CPTAC3 3ac6322d-2f80-4bb5-a400-6015566d0b72 cbccbb61a8fd46e5ce23da18b2b7a399 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_24db241.WXS.T.hg38 C3L-00581 CCRCC WXS tumor CPT0007410009 0701a048-fa71-42c0-853d-329a0d5aa4f1_wxs_gdc_realn.bam 66698292996 BAM harmonized CPTAC3 a177df73-ff56-40e8-b1fa-680c3f6a94c7 de9f9e84cb85a0eb32a05baaf408a3ac {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_6588d199.MethArray.Green.T C3L-00581 CCRCC Methylation_Array tumor CPT0007330009 204372030015_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 b9229d25-50ab-4187-8767-1f6256976d6d 855a77a030564a11de332c6bc47dd08e {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_6588d199.MethArray.Red.T C3L-00581 CCRCC Methylation_Array tumor CPT0007330009 204372030015_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 e348080d-8087-4bbe-b34e-eb196589dd4e f354d5606005beec0ba2ab05c2bfd5c5 {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_6588d199.WGS.T C3L-00581 CCRCC WGS tumor CPT0007330009 CPT0007330009.WholeGenome.RP-2158.bam 23647325695 BAM aligned CPTAC3 8c03258a-4828-4f4e-b6d6-afa450450ac2 20f212fbd4c4d8691d8a4f23b2639a0d {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_6588d199.WGS.T.hg38 C3L-00581 CCRCC WGS tumor CPT0007330009 59865d46-a742-4ac0-88a1-2973bccead8e_wgs_gdc_realn.bam 68986127272 BAM harmonized CPTAC3 de0bba0c-65ae-49ac-b741-332b4af6ad8d 7f6cd0ee0975146838a8b980b356a298 {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_6588d199.WXS.T C3L-00581 CCRCC WXS tumor CPT0007330009 CPT0007330009.WholeExome.RP-1303.bam 19300326576 BAM aligned CPTAC3 6c49e2ec-c5ba-4d1e-b70e-49f7c5faa76f e327afa954140a8fba7bbe6dc189c4f8 {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_6588d199.WXS.T.hg38 C3L-00581 CCRCC WXS tumor CPT0007330009 59865d46-a742-4ac0-88a1-2973bccead8e_wxs_gdc_realn.bam 26370101952 BAM harmonized CPTAC3 6cb9dfeb-2e8a-4548-99d2-912e6bfb55bd 8e2176321a08bd8868d93d935673d70c {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_92f2afd0.miRNA-Seq.S46_L003_R1.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007410006 200526_UNC32-K00270_0248_BHH7WFBBXY_TGACCA_S46_L003_R1_001.unaln.bam 260391663 BAM S46_L003_R1 unaligned CPTAC3 962009ea-88e0-4cc6-aed4-c36e53eabfcf c63b1129864b01b455de7ae0f97215aa {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_92f2afd0.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007410006 773f7ad4-601e-4cd8-b980-fc247390ce86_mirnaseq_gdc_realn.bam 290074511 BAM harmonized CPTAC3 b28e9fd3-ecdb-4710-a57e-1b6f5385d60c 315dae76d8fe64f5c44e4735222b0cd0 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_92f2afd0.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.chimeric.gdc_realn.bam 30936631 BAM chimeric harmonized CPTAC3 048f9ad5-096c-4054-b514-eb8f7917fe71 2bd2382368c0583cc763a7ab045410c3 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_92f2afd0.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.genomic.gdc_realn.bam 7045977940 BAM genomic harmonized CPTAC3 fc731756-9681-4dd2-83d6-11c046cf6b25 02afa27eff134b26b4ce630b4d3ad106 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_92f2afd0.RNA-Seq.S32_L008_R1.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R1_001.fastq.gz 3267825908 FASTQ S32_L008_R1 unaligned CPTAC3 c270b0a2-869d-47f9-b418-39a5fc471781 557a9b4274b0ae876133285e1a3f7c54 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_92f2afd0.RNA-Seq.S32_L008_R2.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R2_001.fastq.gz 3872896238 FASTQ S32_L008_R2 unaligned CPTAC3 758ec05b-4bf7-4841-a92a-63dd823807df 8c4c721ce8b765c5e2a088b7ead00c8f {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_92f2afd0.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.transcriptome.gdc_realn.bam 9111468254 BAM transcriptome harmonized CPTAC3 78bddf73-79ea-421b-bd14-1dc21c30e97f 67cbd2fa2c79a836ad67b8175f3fc9d3 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_f537cc08.miRNA-Seq.S21_L006_R1.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007330006 201209_UNC32-K00270_0265_AHJ55WBBXY_TCGGCA_S21_L006_R1_001.unaln.bam 240886166 BAM S21_L006_R1 unaligned CPTAC3 f764d1a9-e933-45fd-9471-668e7239288d 6c892445c1e6e3efb40a0cbb0c0d37bc {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_f537cc08.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007330006 b47317d1-3276-4937-9eef-e6ffb7da72f1_mirnaseq_gdc_realn.bam 263587127 BAM harmonized CPTAC3 7993ff5f-98f2-4f10-a36b-d332e0a737c6 db80c70e137c02209f0ed72b3b905fdd {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_f537cc08.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.chimeric.gdc_realn.bam 42820477 BAM chimeric harmonized CPTAC3 208a8192-331b-4c00-81d9-305520ae73a4 b66b351daf03540da08da09f8b90d340 {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_f537cc08.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.genomic.gdc_realn.bam 8672788874 BAM genomic harmonized CPTAC3 aa457f88-fca8-4a20-b777-c7d413f2cb9f 7208e5c6036a925cce0f9c70e677be82 {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_f537cc08.RNA-Seq.S31_L008_R1.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R1_001.fastq.gz 4121114773 FASTQ S31_L008_R1 unaligned CPTAC3 72c54741-3962-47fe-bd92-4f15eb675c54 5ae8594dd70dfd6ea5bd49b933afc7ce {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_f537cc08.RNA-Seq.S31_L008_R2.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R2_001.fastq.gz 4740809569 FASTQ S31_L008_R2 unaligned CPTAC3 43b5c2c0-f3fb-4e36-bc50-a86a0f1af22f 1a7b550e7abfca70a5be2e59b83b589d {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00581.DUP_f537cc08.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.transcriptome.gdc_realn.bam 11562295471 BAM transcriptome harmonized CPTAC3 0f244c75-0418-4f25-8c11-e3d3d0153ea9 d609e250bbe23d581c910fdf9f91540a {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00581.MethArray.Green.A C3L-00581 CCRCC Methylation_Array tissue_normal CPT0007470009 204930640011_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e4624fea-a14e-4105-9f04-9d4d34c2a99e 62c980742a231d69cefbfcc90d24302a {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.MethArray.Green.T C3L-00581 CCRCC Methylation_Array tumor CPT0007320009 202184990069_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5e73e331-8d68-4aaa-ad4c-1b3d191049e7 9d504313344a14351de6aabce08c8fa0 {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor"} -C3L-00581.MethArray.Red.A C3L-00581 CCRCC Methylation_Array tissue_normal CPT0007470009 204930640011_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 84ff7851-f724-429e-b9a4-065fbaad94a8 04cf1fb9437e9047eb96e2e6514fec50 {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.MethArray.Red.T C3L-00581 CCRCC Methylation_Array tumor CPT0007320009 202184990069_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 3f181994-f6be-4497-8fe8-08fc9b75b0e4 77f4ddfe548d97e7ae782a8a156e55bd {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor"} -C3L-00581.miRNA-Seq.A.hg38 C3L-00581 CCRCC miRNA-Seq tissue_normal CPT0007470006 3f432bf7-06b8-454d-95d5-ad20706f41d3_mirnaseq_gdc_realn.bam 220194353 BAM harmonized CPTAC3 078d56d7-1b1c-4c6a-8427-4964106e6c11 89c7f079dbf6ce66e3b439c8c3490670 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.miRNA-Seq.S16_L005_R1.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007320006 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L005_R1_001.unaln.bam 211021100 BAM S16_L005_R1 unaligned CPTAC3 a978f53b-1e05-46e9-a0d6-32a9268da128 a5ffab99d53370d3266b3925aed62e88 {"aliquot_tag": "ALQ_c857e5b8", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00581.miRNA-Seq.S41_L004_R1.A C3L-00581 CCRCC miRNA-Seq tissue_normal CPT0007470006 181108_UNC31-K00269_0163_BH23TVBBXY_GACGAC_S41_L004_R1_001.unaln.bam 197084497 BAM S41_L004_R1 unaligned CPTAC3 9cbf526f-aa6c-4d3b-8808-2083db83d63d 3c9085b06e8bb80d97a636828bf88b12 {"aliquot_tag": "ALQ_1db25a70", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007320006 49001195-cda0-4c86-bdcc-1be1769e1206_mirnaseq_gdc_realn.bam 233410776 BAM harmonized CPTAC3 2f61908d-1e05-4b73-a1aa-cdbbb5666e93 0ffde20b2ccfdbaeec64f7e9595a3d6d {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor"} -C3L-00581.RNA-Seq.chimeric.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.chimeric.gdc_realn.bam 77030163 BAM chimeric harmonized CPTAC3 ad10fbea-861b-4a9d-8576-2e32f7c7462f f94b6810368ef1fb0615ac55033939e4 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.chimeric.gdc_realn.bam 87550110 BAM chimeric harmonized CPTAC3 fec1a19b-048c-4c75-8fbc-35d8e3862d35 cf65411006538336f2f589522c612f04 {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor"} -C3L-00581.RNA-Seq.genomic.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.genomic.gdc_realn.bam 9267981335 BAM genomic harmonized CPTAC3 1b849705-0426-4ac2-9d4b-c35af0b9098a 499a2d1b1b03115dbe09cbc05e9a1dc2 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.genomic.gdc_realn.bam 10470128420 BAM genomic harmonized CPTAC3 61d3c350-b42d-49bc-9006-4effc1335172 4b90437522455c150a258880cf644e35 {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor"} -C3L-00581.RNA-Seq.S44_L004_R1.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R1_001.fastq.gz 4482778225 FASTQ S44_L004_R1 unaligned CPTAC3 f761dab3-3ff1-4a49-9474-8036d27c9280 2659fecee1adbb3419bb2b1f24924b8e {"aliquot_tag": "ALQ_1db25a70", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.RNA-Seq.S44_L004_R2.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R2_001.fastq.gz 4732494986 FASTQ S44_L004_R2 unaligned CPTAC3 d3811f1e-b92a-4957-8381-aff5be4e16fe 00ede637a9549119d3153c28e75d4b75 {"aliquot_tag": "ALQ_1db25a70", "sample": "S44", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.RNA-Seq.S9_L003_R1.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R1_001.fastq.gz 5032213698 FASTQ S9_L003_R1 unaligned CPTAC3 dcb8323b-2167-4006-b110-77be5dc764f2 b63a627569f61690073d8c9d4b46f9ff {"aliquot_tag": "ALQ_c857e5b8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00581.RNA-Seq.S9_L003_R2.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R2_001.fastq.gz 5480544572 FASTQ S9_L003_R2 unaligned CPTAC3 9a5a64fa-d904-4a25-be8b-3ba527e2b306 bcba8db1fe5a531d42eb6957b6682fb4 {"aliquot_tag": "ALQ_c857e5b8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00581.RNA-Seq.transcriptome.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.transcriptome.gdc_realn.bam 10853877875 BAM transcriptome harmonized CPTAC3 1ed4301d-d4a4-45fc-9854-025749708b12 81449eab8315f0250438c49aa4ea81c5 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.transcriptome.gdc_realn.bam 14499440378 BAM transcriptome harmonized CPTAC3 06c2c69a-b7f4-4bb2-a126-9354d98e3ead 301cfe25270522c0c1bb1d72315f1727 {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor"} -C3L-00581.WGS.A C3L-00581 CCRCC WGS tissue_normal CPT0007470009 CPT0007470009.WholeGenome.RP-1303.bam 63419664252 BAM aligned CPTAC3 e3c15a95-5d39-48ce-97ea-b7e2d4ae593c d7657c733c4c1418e9b170cdf41c4375 {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.WGS.A.hg38 C3L-00581 CCRCC WGS tissue_normal CPT0007470009 4f72a152-448d-4036-8ddb-a12576e7689c_wgs_gdc_realn.bam 91702661429 BAM harmonized CPTAC3 96faf309-d99a-4243-ba15-1fe8593487a8 0b5be141d31dd3e9480afd106e4e167a {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.WGS.N C3L-00581 CCRCC WGS blood_normal CPT0002780002 CPT0002780002.WholeGenome.RP-1303.bam 67649247463 BAM aligned CPTAC3 703f0a35-5acd-44fc-9bac-9174afc77d77 2c3c23e19702e73b3641b05cc10db911 {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00581.WGS.N.hg38 C3L-00581 CCRCC WGS blood_normal CPT0002780002 e9638496-3274-4e1b-b294-c8780236f749_gdc_realn.bam 100037637687 BAM harmonized CPTAC3 719061f9-20d5-428b-9615-9a6e3e092026 73c6b27fe9d31afb67ebfe82a7d6d178 {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00581.WGS.T C3L-00581 CCRCC WGS tumor CPT0007320009 CPT0007320009.WholeGenome.RP-1303.bam 63863521818 BAM aligned CPTAC3 46b1dfb7-bbff-4468-8422-97182dd5f6dc e799a9c3cf87d4139964f947372d749d {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor"} -C3L-00581.WGS.T.hg38 C3L-00581 CCRCC WGS tumor CPT0007320009 98006060-84ac-4906-b27b-6f95c0806ab4_gdc_realn.bam 94349859513 BAM harmonized CPTAC3 6651946e-d477-4929-81d8-4e7db9bf2f63 f3552146a1f9a1e4de89e4a546f1cd1b {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor"} -C3L-00581.WXS.A C3L-00581 CCRCC WXS tissue_normal CPT0007470009 CPT0007470009.WholeExome.RP-1303.bam 34833958680 BAM aligned CPTAC3 823443aa-3aca-4661-bdf5-d5b38f762f12 c6445763da4beb0b78eabd3c9b3e7a8e {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.WXS.A.hg38 C3L-00581 CCRCC WXS tissue_normal CPT0007470009 4f72a152-448d-4036-8ddb-a12576e7689c_wxs_gdc_realn.bam 47035802866 BAM harmonized CPTAC3 aa4ff124-2936-406e-bc5d-f74f82104810 c64592fcf86452b9e5ccca30c6c81e65 {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00581.WXS.N C3L-00581 CCRCC WXS blood_normal CPT0002780002 CPT0002780002.WholeExome.RP-1303.bam 23676576506 BAM aligned CPTAC3 c6278968-ad2c-4f0d-baab-ccd25027a487 a73a85989072b413bf9c7f1ffa308f7a {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00581.WXS.N.hg38 C3L-00581 CCRCC WXS blood_normal CPT0002780002 e9638496-3274-4e1b-b294-c8780236f749_gdc_realn.bam 32109620470 BAM harmonized CPTAC3 4d6619b0-b9a1-409b-ada3-8331aa643148 454b01a056dbaed814a55dea3bb30a41 {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00581.WXS.T C3L-00581 CCRCC WXS tumor CPT0007320009 CPT0007320009.WholeExome.RP-1303.bam 26336411594 BAM aligned CPTAC3 68cf7a29-11e8-4715-bf81-d0f74367a928 2264b202957ed716f5b5cb18404b48e2 {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor"} -C3L-00581.WXS.T.hg38 C3L-00581 CCRCC WXS tumor CPT0007320009 98006060-84ac-4906-b27b-6f95c0806ab4_gdc_realn.bam 35804199649 BAM harmonized CPTAC3 4575fae3-b4ec-48c7-bfa4-db21f199403d 2a4dfc0dff76cb0776f412b67110b2d3 {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_3b95fef1.MethArray.Green.T C3L-00583 CCRCC Methylation_Array tumor CPT0019150009 204372030071_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 9d1393b4-e23d-408c-8581-6fb605e189a2 423ed5ab13ca0ed22c768cfbeeeb76f6 {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_3b95fef1.MethArray.Red.T C3L-00583 CCRCC Methylation_Array tumor CPT0019150009 204372030071_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 4c5abb20-9bac-4c45-a828-a93f077c1e61 9e868f134b686c049b3fefe443d115e9 {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_3b95fef1.WGS.T C3L-00583 CCRCC WGS tumor CPT0019150009 CPT0019150009.WholeGenome.RP-2158.bam 28113681043 BAM aligned CPTAC3 bbb4eab6-e948-4507-91d6-1f968303c008 42a32e5ac72b0e5f36d031f82157245f {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_3b95fef1.WGS.T.hg38 C3L-00583 CCRCC WGS tumor CPT0019150009 9da9d6ff-b3d1-4979-b01a-2e7dd1bcd56c_wgs_gdc_realn.bam 83373247014 BAM harmonized CPTAC3 54a4c2e2-bfe4-4aec-a262-0d09c4ec0f4c bdeeb3d3f3321fe8fd881895c6cdc5d4 {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_3b95fef1.WXS.T C3L-00583 CCRCC WXS tumor CPT0019150009 CPT0019150009.WholeExome.RP-1303.bam 21372716267 BAM aligned CPTAC3 cdafe1e5-1437-4924-9e93-0faf02b273fc 393e8d2decdfe4e3a62f79aeb227de7c {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_3b95fef1.WXS.T.hg38 C3L-00583 CCRCC WXS tumor CPT0019150009 9da9d6ff-b3d1-4979-b01a-2e7dd1bcd56c_wxs_gdc_realn.bam 28850499468 BAM harmonized CPTAC3 5d1ccd8c-840d-4ed0-a421-26c51ef2d5f3 e01b062b40a3254cdd8ec1ac6eb0d4ed {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_6f5d741.MethArray.Green.T C3L-00583 CCRCC Methylation_Array tumor CPT0019140009 204372030070_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d3d08696-407a-4430-9590-b59f0121027e 056699239512341c040d39d0737b4e87 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_6f5d741.MethArray.Red.T C3L-00583 CCRCC Methylation_Array tumor CPT0019140009 204372030070_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 eb56e239-f3f5-4065-abb3-0a81996ede35 8b415cfd4607e01d991794aa7900e44b {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_6f5d741.WGS.T C3L-00583 CCRCC WGS tumor CPT0019140009 CPT0019140009.WholeGenome.RP-2158.bam 23457207212 BAM aligned CPTAC3 a8c23a32-6c63-4e4a-bca8-d4fd93fe83f2 446ca43c0724f2115e56d7f86221226a {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_6f5d741.WGS.T.hg38 C3L-00583 CCRCC WGS tumor CPT0019140009 d199a60b-540c-4728-969b-c420123d9b5a_wgs_gdc_realn.bam 70543419930 BAM harmonized CPTAC3 71e41219-5f78-41e4-8ab6-661120ee29f2 510006ccdba557b7b74c61aa48c5cc48 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_6f5d741.WXS.T C3L-00583 CCRCC WXS tumor CPT0019140009 CPT0019140009.WholeExome.RP-1303.bam 22034496721 BAM aligned CPTAC3 ccf7a2b6-6ce6-4653-bd20-d18384a04550 90ef3b720efce1f1219e448cf8c133c5 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_6f5d741.WXS.T.hg38 C3L-00583 CCRCC WXS tumor CPT0019140009 d199a60b-540c-4728-969b-c420123d9b5a_wxs_gdc_realn.bam 30310903890 BAM harmonized CPTAC3 1958160c-c671-4316-94d3-40c01456b2cc c01fa2383419a07dfe4a873f8b5a7942 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_964acad0.miRNA-Seq.S42_L003_R1.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019140006 200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L003_R1_001.unaln.bam 246108794 BAM S42_L003_R1 unaligned CPTAC3 16f5c677-61be-478c-8e3e-5d658758b0b0 6e76a0a72139ccc3aa4a3fa600efbf3e {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_964acad0.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019140006 9757abf8-c157-46d7-aeee-dee1c9c1f003_mirnaseq_gdc_realn.bam 275161502 BAM harmonized CPTAC3 9be2e859-6707-4097-918f-8feb8aa4cf97 621437246a1505f35d859a40a7d21473 {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_964acad0.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.chimeric.gdc_realn.bam 149458493 BAM chimeric harmonized CPTAC3 4b263828-9b49-4d95-ab22-685511f79e4f 88dc5b299aba7c7f40a3b8619a4449fc {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_964acad0.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.genomic.gdc_realn.bam 8812068645 BAM genomic harmonized CPTAC3 a1695654-9841-488f-bd5a-59b881865e6a 7dcfb94547a6c772528c14623f724f3c {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_964acad0.RNA-Seq.S4_L001_R1.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R1_001.fastq.gz 4048728879 FASTQ S4_L001_R1 unaligned CPTAC3 7f6e3889-42d1-4447-bf21-d3f2c94ebbb6 33ea3660cb0e30f15fb30486eda4793e {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_964acad0.RNA-Seq.S4_L001_R2.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R2_001.fastq.gz 4821507032 FASTQ S4_L001_R2 unaligned CPTAC3 11afe406-9c2c-4e80-bc9e-999e5496cb66 97cb6315a4eea5078ce7b8ca4c39f198 {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_964acad0.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.transcriptome.gdc_realn.bam 10659953048 BAM transcriptome harmonized CPTAC3 0329fde9-2871-4394-a1b3-6b11821427e3 3dca72b4bea6f4a38bd56fb698064bc7 {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_ab2ae360.miRNA-Seq.S40_L003_R1.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019150006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGATC_S40_L003_R1_001.unaln.bam 277857726 BAM S40_L003_R1 unaligned CPTAC3 374be261-8f0a-4a0b-8ae2-b969a0c2b6d2 e84109a9baca5d637d042769b998d914 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_ab2ae360.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019150006 8f9416f7-24c8-4625-b035-bfcdc7c5daa0_mirnaseq_gdc_realn.bam 304615087 BAM harmonized CPTAC3 63ed9909-c01e-4889-b050-d7e975578b7e 8b6edc962c879f545d5670d2a5629c6c {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_ab2ae360.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.chimeric.gdc_realn.bam 96418205 BAM chimeric harmonized CPTAC3 e86d067d-5f63-44c8-8cac-c4e94ac9c962 74f87ffc6829d40748ef3229d0413348 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_ab2ae360.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.genomic.gdc_realn.bam 7754072494 BAM genomic harmonized CPTAC3 891630fd-e853-4dcc-8bb8-a68fadec7a6b 2f3a020b372a653f43fe1771850ab74e {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_ab2ae360.RNA-Seq.S1_L001_R1.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3425522215 FASTQ S1_L001_R1 unaligned CPTAC3 d82386c1-ec69-4e98-a2f7-c25a703e1ce5 939af7cdbcdef5a099294735758deb93 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_ab2ae360.RNA-Seq.S1_L001_R2.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4130070234 FASTQ S1_L001_R2 unaligned CPTAC3 001a222e-33a9-4117-a953-f7aa168ca968 8c0691f41290dc89209c91c462b86027 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00583.DUP_ab2ae360.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.transcriptome.gdc_realn.bam 9834417639 BAM transcriptome harmonized CPTAC3 742f20cc-5f72-4bea-a6b5-9f2015de4745 699a77a86db019dee2ffcbfcc721471a {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00583.MethArray.Green.A C3L-00583 CCRCC Methylation_Array tissue_normal CPT0019160009 204930640042_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e89e2788-674a-42ac-a292-0ce4179eefd5 8357e3905cc4b13b1c279f7cf94b4e87 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.MethArray.Green.T C3L-00583 CCRCC Methylation_Array tumor CPT0019130006 202178770109_R01C01_Grn.idat 13676233 IDAT Green NA CPTAC3 aa57cb7a-fd7f-48cf-bed7-97aa62cd11a5 ee9a74dd1f66a6d50e00f045b0bc2f0b {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor"} -C3L-00583.MethArray.Red.A C3L-00583 CCRCC Methylation_Array tissue_normal CPT0019160009 204930640042_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 30a02a5c-f87c-4f51-8ff6-9998260fbc99 69b8cc711368c780e20b72b58e0bbc05 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.MethArray.Red.T C3L-00583 CCRCC Methylation_Array tumor CPT0019130006 202178770109_R01C01_Red.idat 13676233 IDAT Red NA CPTAC3 41224284-2f94-4a27-abf9-29046edaf51e 5187fc1c511c776e7e5a0209237006c2 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor"} -C3L-00583.miRNA-Seq.A.hg38 C3L-00583 CCRCC miRNA-Seq tissue_normal CPT0019160006 63ead94e-d2a2-4cd3-a3a4-4b853f3f0491_mirnaseq_gdc_realn.bam 206650982 BAM harmonized CPTAC3 d75baaa6-3c41-45f8-b0e7-80a5900133fb 1b29800f375be481fe4b8843b2615835 {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.miRNA-Seq.S21_L004_R1.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019130009 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L004_R1_001.unaln.bam 200595190 BAM S21_L004_R1 unaligned CPTAC3 ed987edd-f4d5-4cfd-a391-d29d6c258afa a833477d306f86f1a1f9a69a1e67e16b {"aliquot_tag": "ALQ_b4d50b51", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00583.miRNA-Seq.S45_L004_R1.A C3L-00583 CCRCC miRNA-Seq tissue_normal CPT0019160006 181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L004_R1_001.unaln.bam 184482783 BAM S45_L004_R1 unaligned CPTAC3 60aa4c60-4495-48b4-bec4-bc9e8891931d 429b5d79f3bcf5895889d29c88d89541 {"aliquot_tag": "ALQ_ec8a99b0", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019130009 4f9f39c4-3d9a-4195-b6da-062c6869ea6f_mirnaseq_gdc_realn.bam 225848387 BAM harmonized CPTAC3 fecf2330-db5c-4a44-9943-9c23f9ccb4ff a8c9f8b1bbbaacd5f57d8e2a689c1d75 {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor"} -C3L-00583.RNA-Seq.chimeric.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.chimeric.gdc_realn.bam 114921560 BAM chimeric harmonized CPTAC3 8a82f76a-18bf-4bae-8530-89f6fe04a9d9 54145ddee3982281fdbbb8dfdac816cd {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.chimeric.gdc_realn.bam 131311013 BAM chimeric harmonized CPTAC3 807eca27-b105-4d9b-800b-8be148151901 72ec0e118193b466a7e2cf091ecdb718 {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor"} -C3L-00583.RNA-Seq.genomic.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.genomic.gdc_realn.bam 7261744127 BAM genomic harmonized CPTAC3 2827be6f-1597-4bb0-866c-81aea91ddd5e 2d3ff311eb9c6d30a1de31b7dd42dac2 {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.genomic.gdc_realn.bam 7589276581 BAM genomic harmonized CPTAC3 95dbe33a-0639-47bb-9049-19879f488840 3934cc22fdddc955298de417bb154529 {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor"} -C3L-00583.RNA-Seq.S19_L005_R1.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R1_001.fastq.gz 4073385982 FASTQ S19_L005_R1 unaligned CPTAC3 3a6ea7b6-610e-4afa-9c10-d9019533a96b 520f1dce87b9651df7edad2c7c17b4eb {"aliquot_tag": "ALQ_b4d50b51", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00583.RNA-Seq.S19_L005_R2.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R2_001.fastq.gz 4392441326 FASTQ S19_L005_R2 unaligned CPTAC3 0bb2dca8-6956-4024-ae6c-1a26c1fbf9f8 d3c9881903c1617289b4d94e3b7e6f9d {"aliquot_tag": "ALQ_b4d50b51", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00583.RNA-Seq.S8_L008_R1.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R1_001.fastq.gz 3519064040 FASTQ S8_L008_R1 unaligned CPTAC3 5864effa-7bb3-434f-84ab-b726d8db1631 6407caaf67fd48f8a93e442e04c672a4 {"aliquot_tag": "ALQ_ec8a99b0", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.RNA-Seq.S8_L008_R2.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R2_001.fastq.gz 3934223727 FASTQ S8_L008_R2 unaligned CPTAC3 bd0af26a-a13b-44ab-ae7d-26b25afd8513 bd92d11a61286f57347c96255d234a80 {"aliquot_tag": "ALQ_ec8a99b0", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.RNA-Seq.transcriptome.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.transcriptome.gdc_realn.bam 8486065405 BAM transcriptome harmonized CPTAC3 28c945cc-0059-43ff-829c-21176eddb47c 86b88dbd57f82af0eb7701dbca89af1f {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.transcriptome.gdc_realn.bam 10339106718 BAM transcriptome harmonized CPTAC3 bec9103d-ed3d-4dc7-8651-8332221bd91c f2fdf8380ea79d348053bc288c6d082f {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor"} -C3L-00583.WGS.A C3L-00583 CCRCC WGS tissue_normal CPT0019160009 CPT0019160009.WholeGenome.RP-1303.bam 76664662790 BAM aligned CPTAC3 2d7d2c03-e0a9-4020-be02-31a21d2118b7 842c1d69e581e83f778aa5158f292737 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.WGS.A.hg38 C3L-00583 CCRCC WGS tissue_normal CPT0019160009 9571ffd8-b1a8-4dc1-b1c8-e1fbe142cd15_wgs_gdc_realn.bam 112564806221 BAM harmonized CPTAC3 9481a533-44e9-45fc-b810-8e085953bbab f32ac3625d3b874bf93bdb980fe0200b {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.WGS.N C3L-00583 CCRCC WGS blood_normal CPT0019900002 CPT0019900002.WholeGenome.RP-1303.bam 61166932059 BAM aligned CPTAC3 589e7423-30d2-4238-baa3-158e055530ab d63042afad42dc387f068326fac12619 {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00583.WGS.N.hg38 C3L-00583 CCRCC WGS blood_normal CPT0019900002 4f7cf63d-7f7d-4b92-9616-d101839c5d0f_gdc_realn.bam 89075574047 BAM harmonized CPTAC3 2a23721a-3371-43b1-a4e8-6dd5b9aa75b2 b2ead1681c0b90bf00d7cef2ae1f6f1e {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00583.WGS.T C3L-00583 CCRCC WGS tumor CPT0019130006 CPT0019130006.WholeGenome.RP-1303.bam 62352400634 BAM aligned CPTAC3 40deb190-daac-4dec-97de-5840d0acdc68 6f13002fd4d2663ca11b8204e93994d8 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor"} -C3L-00583.WGS.T.hg38 C3L-00583 CCRCC WGS tumor CPT0019130006 b95aa1d8-289e-4fb5-8a7c-362ab610d931_gdc_realn.bam 90342462108 BAM harmonized CPTAC3 19ef21ed-ca14-4061-9228-e6fa1867841d f2c7bc31af2bba590dc2bcb5c0f3822f {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor"} -C3L-00583.WXS.A C3L-00583 CCRCC WXS tissue_normal CPT0019160009 CPT0019160009.WholeExome.RP-1303.bam 32173740433 BAM aligned CPTAC3 67779285-40bc-40b1-ba7d-4725272b0ae2 742f670f72d27348d1b4566a9a28f3f1 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.WXS.A.hg38 C3L-00583 CCRCC WXS tissue_normal CPT0019160009 9571ffd8-b1a8-4dc1-b1c8-e1fbe142cd15_wxs_gdc_realn.bam 43625085913 BAM harmonized CPTAC3 a9ca8a70-ba12-471d-847c-aaabd73f64ea e71a098b37ee36f5ed718171fada93b7 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00583.WXS.N C3L-00583 CCRCC WXS blood_normal CPT0019900002 CPT0019900002.WholeExome.RP-1303.bam 28002865273 BAM aligned CPTAC3 ee030029-dc14-42ec-93f5-33a36af3c0c1 3c004991637a98e98ae1c8a61925248e {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00583.WXS.N.hg38 C3L-00583 CCRCC WXS blood_normal CPT0019900002 4f7cf63d-7f7d-4b92-9616-d101839c5d0f_gdc_realn.bam 38153859823 BAM harmonized CPTAC3 45d0d4d7-49d7-4693-b792-03bd82f50105 d62722e2c44d984858e1033c8fb761f1 {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00583.WXS.T C3L-00583 CCRCC WXS tumor CPT0019130006 CPT0019130006.WholeExome.RP-1303.bam 36543232034 BAM aligned CPTAC3 7a0d6fcc-f152-4926-b209-8c18dc2fc2fb 35e5096485dec8031968a67d82e07bb1 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor"} -C3L-00583.WXS.T.hg38 C3L-00583 CCRCC WXS tumor CPT0019130006 b95aa1d8-289e-4fb5-8a7c-362ab610d931_gdc_realn.bam 49483675931 BAM harmonized CPTAC3 2d63999a-b9eb-4a93-8f09-bb3df487f938 31cff4b066215643b9fe55e7dee28b39 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor"} -C3L-00586.MethArray.Green.T C3L-00586 UCEC Methylation_Array tumor CPT0023630006 202163550076_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 16464daf-4e9f-452a-bd44-708658e30f26 bf8cae4e6e35e2598122bd9ecf73ad33 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor"} -C3L-00586.MethArray.Red.T C3L-00586 UCEC Methylation_Array tumor CPT0023630006 202163550076_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 476434a3-bffb-43a0-ae51-1b2c73068b84 bbc8ae42753ba8cf62dcda200b236c00 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor"} -C3L-00586.miRNA-Seq.A.hg38 C3L-00586 UCEC miRNA-Seq tissue_normal CPT0023640006 39db0f0c-f022-4ba4-a268-6327645f7383_mirnaseq_gdc_realn.bam 277245387 BAM harmonized CPTAC3 cac3c813-2733-4dee-ae4c-033618c99669 b9f2565a5bdd8976694c21ddb791b5b7 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.miRNA-Seq.S43_L004_R1.T C3L-00586 UCEC miRNA-Seq tumor CPT0023630009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGAAA_S43_L004_R1_001.unaln.bam 310023797 BAM S43_L004_R1 unaligned CPTAC3 1897e24d-5eb1-4d93-b599-95b1bfbf3347 f5a936b1578b9c98c47262934ef7ed01 {"aliquot_tag": "ALQ_832f6344", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00586.miRNA-Seq.S6_L006_R1.A C3L-00586 UCEC miRNA-Seq tissue_normal CPT0023640006 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L006_R1_001.unaln.bam 246461781 BAM S6_L006_R1 unaligned CPTAC3 2285e7c0-8bdf-4039-8e8c-5b6b941e8148 e44a4f4478f5851d200f3fc16f1bf54b {"aliquot_tag": "ALQ_a1b0a2c5", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.miRNA-Seq.T.hg38 C3L-00586 UCEC miRNA-Seq tumor CPT0023630009 66c5443c-007d-42ff-9e84-68e6473416b1_mirnaseq_gdc_realn.bam 335633123 BAM harmonized CPTAC3 55f401cd-35a4-4de7-b73f-dd597cfd1b42 132dd65025fd08fdec666abb4baca5ea {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.chimeric.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.chimeric.gdc_realn.bam 168393348 BAM chimeric harmonized CPTAC3 d6a53639-3df2-48b4-8430-ac4bfa41ed01 6834b22a164047a4f0fe5eede5f5e837 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.RNA-Seq.chimeric.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.chimeric.gdc_realn.bam 103948340 BAM chimeric harmonized CPTAC3 5b44a7ab-546e-40c0-aad5-5dd4029d6845 b9a7becce210d89c78aa3eeeb7598531 {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.chimeric.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.chimeric.gdc_realn.bam 121934112 BAM chimeric harmonized CPTAC3 dc825739-c43e-4b9a-be2c-1a8d34cb159e ab3e99a3a18e8baccfa59cd2bf858c6d {"aliquot_tag": "ALQ_1d3a52df", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.genomic.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.genomic.gdc_realn.bam 9073448496 BAM genomic harmonized CPTAC3 31baf514-c47c-4ebe-9fe3-f00b350b3193 4ec7675e89120d7c789c25fbf807a535 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.RNA-Seq.genomic.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.genomic.gdc_realn.bam 11724071805 BAM genomic harmonized CPTAC3 fe18b968-a91e-4eb3-bcba-8dd78c0c36d0 85fb4266d79abae44c3135d2aa1d74e3 {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.genomic.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.genomic.gdc_realn.bam 6416251513 BAM genomic harmonized CPTAC3 28f4ad82-e1ac-4968-b9af-3bd1aeaedabd 5683010182dda572ee0e7c40e2126bb5 {"aliquot_tag": "ALQ_1d3a52df", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.S23_L008_R1.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R1_001.fastq.gz 5533994865 FASTQ S23_L008_R1 unaligned CPTAC3 20fcc809-dcdf-46c5-b40d-c1aa39c6791c 1f1a892b356db123b29f304287a4c339 {"aliquot_tag": "ALQ_832f6344", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.S23_L008_R2.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R2_001.fastq.gz 5988626529 FASTQ S23_L008_R2 unaligned CPTAC3 e731e945-44ae-4179-9672-a2a6a1fb2d94 81acbdadeb4a5aa1ae3674a58a26d710 {"aliquot_tag": "ALQ_832f6344", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.S3_R1.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R1_001.fastq.gz 3653714781 FASTQ S3_R1 unaligned CPTAC3 dde1a646-97dc-4db7-9765-daffe2080a3b a26d5f1b63e9c3926b60494c67287416 {"aliquot_tag": "ALQ_1d3a52df", "sample": "S3", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.S3_R2.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R2_001.fastq.gz 3775461393 FASTQ S3_R2 unaligned CPTAC3 8d4f92c4-9b34-48a5-ba92-c6f42ee61a11 821bda2fe423a3a5f8663065e34a05a7 {"aliquot_tag": "ALQ_1d3a52df", "sample": "S3", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.S7_L002_R1.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R1_001.fastq.gz 4142046687 FASTQ S7_L002_R1 unaligned CPTAC3 52d135b5-6065-44c4-abc4-8245ce9694dd d380b254083dc3daad6ab5c8f32c91c5 {"aliquot_tag": "ALQ_a1b0a2c5", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.RNA-Seq.S7_L002_R2.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R2_001.fastq.gz 4623538411 FASTQ S7_L002_R2 unaligned CPTAC3 9509bda6-905c-4583-b31a-debc0d5afc82 55b3285d91c377c273a68685fc969b29 {"aliquot_tag": "ALQ_a1b0a2c5", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.RNA-Seq.transcriptome.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.transcriptome.gdc_realn.bam 11122359889 BAM transcriptome harmonized CPTAC3 8db5bd40-0272-44b1-89f6-e2303b3f37f2 6ff54b978098d89227e5a78917b1ff02 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.RNA-Seq.transcriptome.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.transcriptome.gdc_realn.bam 14974390499 BAM transcriptome harmonized CPTAC3 9bf7478e-be0d-4f4b-b630-ed80ed56c5ac 70fba5c453c409e4e75f8c2b65d27772 {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor"} -C3L-00586.RNA-Seq.transcriptome.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.transcriptome.gdc_realn.bam 3369515099 BAM transcriptome harmonized CPTAC3 770ab7f5-1730-4b63-bf9f-198462a38a36 f972f0ca027903947182874767a63b71 {"aliquot_tag": "ALQ_1d3a52df", "gdc_sample_type": "Primary Tumor"} -C3L-00586.WGS.A C3L-00586 UCEC WGS tissue_normal CPT0023640009 CPT0023640009.WholeGenome.RP-1303.bam 50162386928 BAM aligned CPTAC3 ad055a5d-4a2d-476d-8945-6e83f747e9dc a8eabb88294b5f2ff805893f08c6d914 {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.WGS.A.hg38 C3L-00586 UCEC WGS tissue_normal CPT0023640009 6e12c1b5-5971-498b-b545-11e58f92afb9_wgs_gdc_realn.bam 74648740747 BAM harmonized CPTAC3 9f9384d6-fd9c-474b-82bb-db9843d45ba9 8b2451a2ddd87865a42da069c1c788ba {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.WGS.N C3L-00586 UCEC WGS blood_normal CPT0024590002 CPT0024590002.WholeGenome.RP-1303.bam 59347229383 BAM aligned CPTAC3 e6c394c5-bd99-43eb-9173-e887562dfef5 157e483d8e1e98f1316bc2ad48eb620b {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00586.WGS.N.hg38 C3L-00586 UCEC WGS blood_normal CPT0024590002 dde47804-86f0-4b49-b448-483e4353bc22_gdc_realn.bam 88150461300 BAM harmonized CPTAC3 cf887209-91e9-4a98-af3f-1559013596d4 025fa64a3c49a62d2990ab81d2a0f2d3 {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00586.WGS.T C3L-00586 UCEC WGS tumor CPT0023630006 CPT0023630006.WholeGenome.RP-1303.bam 72184465010 BAM aligned CPTAC3 0fe6067d-830a-4ebc-946e-5e5b0fb32676 8bf01992f360dcd980da3add414f549e {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor"} -C3L-00586.WGS.T.hg38 C3L-00586 UCEC WGS tumor CPT0023630006 c14109ad-a867-4f58-9e70-a7575597416a_gdc_realn.bam 104524961688 BAM harmonized CPTAC3 e9d15bfb-5cca-4f62-9cd6-247f8fe3e58e de3f790a1d34b6e06ac79138e699fbd1 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor"} -C3L-00586.WXS.A C3L-00586 UCEC WXS tissue_normal CPT0023640009 CPT0023640009.WholeExome.RP-1303.bam 31464314483 BAM aligned CPTAC3 47569a7d-ed81-43d4-a3c5-140e37165f41 56d171a8f641971f7f7f0a05bf1bed75 {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.WXS.A.hg38 C3L-00586 UCEC WXS tissue_normal CPT0023640009 6e12c1b5-5971-498b-b545-11e58f92afb9_wxs_gdc_realn.bam 42402953802 BAM harmonized CPTAC3 3992451b-f2a3-41cb-8a4f-8134032c777b 521bcc44220e60b2d462a698e24ec56d {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00586.WXS.N C3L-00586 UCEC WXS blood_normal CPT0024590002 CPT0024590002.WholeExome.RP-1303.bam 34268093947 BAM aligned CPTAC3 e36f3c86-e8e1-4391-92b7-e14d1e29a5f9 54a0d0adc84e00d33a41973e8152a7c1 {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00586.WXS.N.hg38 C3L-00586 UCEC WXS blood_normal CPT0024590002 dde47804-86f0-4b49-b448-483e4353bc22_gdc_realn.bam 46806822969 BAM harmonized CPTAC3 38df11e7-4962-4828-a4bb-556f360d21a3 14ee29efd0104f42472db8052f54b0e1 {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00586.WXS.T C3L-00586 UCEC WXS tumor CPT0023630006 CPT0023630006.WholeExome.RP-1303.bam 26408536780 BAM aligned CPTAC3 785195c2-a137-4e95-8edc-3a97b61a1086 22ffe5ce44035bb37801408a432eb86f {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor"} -C3L-00586.WXS.T.hg38 C3L-00586 UCEC WXS tumor CPT0023630006 c14109ad-a867-4f58-9e70-a7575597416a_gdc_realn.bam 36358025676 BAM harmonized CPTAC3 8cf50c93-9dec-4515-82a7-1959f8e7f312 0df2e79d2802f099b337105363144c74 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor"} -C3L-00589.MethArray.Green.A C3L-00589 PDA Methylation_Array tissue_normal CPT0063990009 203561620008_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9635a7dd-06ee-422e-8e00-d51bf5dd177d 656e2b0e8efcfe53d69d4016faa7e524 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.MethArray.Green.T C3L-00589 PDA Methylation_Array tumor CPT0063970007 202178770045_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 226c5a80-19f6-4d60-8f24-e81ededbcc47 a97d19bf8240a11647c6b109ce8bb058 {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor"} -C3L-00589.MethArray.Red.A C3L-00589 PDA Methylation_Array tissue_normal CPT0063990009 203561620008_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 9f8c17e6-572e-4874-b1f7-2cd589f9f0d6 5b89dabdf503b574dd0001707571187e {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.MethArray.Red.T C3L-00589 PDA Methylation_Array tumor CPT0063970007 202178770045_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 4fc435bf-4edd-4ff8-ae5d-60371b6bd147 5297ece86c0d672a511dcff0f795105f {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor"} -C3L-00589.miRNA-Seq.A.hg38 C3L-00589 PDA miRNA-Seq tissue_normal CPT0063990006 34aca5db-215b-4947-a043-6b063cb678ed_mirnaseq_gdc_realn.bam 216535930 BAM harmonized CPTAC3 0bcfbfc8-5d7e-4a85-8615-acd85710f533 ff6576e0dc36fb4be1bfdbb8490b498b {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.miRNA-Seq.S2_L001_R1.A C3L-00589 PDA miRNA-Seq tissue_normal CPT0063990006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 193572330 BAM S2_L001_R1 unaligned CPTAC3 3db49927-0fda-404f-a2e9-895c7fa9c617 e7beac7c4de7fcee2b417da2fc321e2f {"aliquot_tag": "ALQ_2c3cda5b", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.miRNA-Seq.S6_L003_R1.T C3L-00589 PDA miRNA-Seq tumor CPT0063970010 180924_UNC31-K00269_0154_AHWTMLBBXX_ACTGAT_S6_L003_R1_001.unaln.bam 306383475 BAM S6_L003_R1 unaligned CPTAC3 ee7ef5aa-5078-4618-a6eb-368d49a14bb2 c5a40572c8230bbec6875aea8b52541a {"aliquot_tag": "ALQ_6374f04e", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00589.miRNA-Seq.T.hg38 C3L-00589 PDA miRNA-Seq tumor CPT0063970010 65ddf445-e8d9-4c52-8e5c-67db9f898552_mirnaseq_gdc_realn.bam 338589852 BAM harmonized CPTAC3 bda3f741-1069-4724-beeb-0157e95cea10 ef390fbce4128deebba58dc56b4b5321 {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor"} -C3L-00589.RNA-Seq.chimeric.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.chimeric.gdc_realn.bam 117160477 BAM chimeric harmonized CPTAC3 0ab98563-88c6-4552-9039-d5b9fcec8b31 51536bf993dfa57169146437310b49df {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.RNA-Seq.chimeric.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.chimeric.gdc_realn.bam 30370816 BAM chimeric harmonized CPTAC3 57b40172-2518-41af-88f3-f6bca7dd0a38 8bb8f17093d93ad67409eb15f023ec6b {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor"} -C3L-00589.RNA-Seq.genomic.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.genomic.gdc_realn.bam 11076734966 BAM genomic harmonized CPTAC3 844b9e56-f9d2-4cad-aceb-80901eb74db8 941d45c8bbd0b1c965875858015c366a {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.genomic.gdc_realn.bam 7969424398 BAM genomic harmonized CPTAC3 646b57e8-9099-4970-96f3-6bb438efed46 e0118a31cde7ae57ea5804e977d8ddee {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor"} -C3L-00589.RNA-Seq.S11_L008_R1.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R1_001.fastq.gz 5066238960 FASTQ S11_L008_R1 unaligned CPTAC3 20d32d65-582a-4620-9c43-d2c7c245f584 f635942b6249b75a9667b01cf0c4dbd6 {"aliquot_tag": "ALQ_2c3cda5b", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.RNA-Seq.S11_L008_R2.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R2_001.fastq.gz 5740435397 FASTQ S11_L008_R2 unaligned CPTAC3 e4b1dbfa-3713-4c5e-9087-bbbcc1a51f54 5d0bdccf6ce6d88047dd5dff816a49c8 {"aliquot_tag": "ALQ_2c3cda5b", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.RNA-Seq.S24_L007_R1.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R1_001.fastq.gz 3920592967 FASTQ S24_L007_R1 unaligned CPTAC3 9568d5b0-fb1c-47bc-bd22-e13e816f7a8d aa64764cda2e8edd6d9fa870090b7eca {"aliquot_tag": "ALQ_6374f04e", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00589.RNA-Seq.S24_L007_R2.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R2_001.fastq.gz 4141977042 FASTQ S24_L007_R2 unaligned CPTAC3 da2c3763-55e0-4d4b-91d0-d0af716be826 6bbc74adb697094eeec86537597a25a6 {"aliquot_tag": "ALQ_6374f04e", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00589.RNA-Seq.transcriptome.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.transcriptome.gdc_realn.bam 12734282428 BAM transcriptome harmonized CPTAC3 8e0d9431-8e80-4b20-98ec-9df468109050 a0ff6bb2ca57373daacc797f5c83cd58 {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.RNA-Seq.transcriptome.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.transcriptome.gdc_realn.bam 11273775063 BAM transcriptome harmonized CPTAC3 32c47da8-0a84-496c-b4d9-4406b0be1964 7acadc097c55c05c75dd33688023a0d3 {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor"} -C3L-00589.Targeted.T C3L-00589 PDA Targeted_Sequencing tumor CPT0063970007_1 CPT0063970007_1.CustomSelection.RP-1303.PDO-18786.bam 3329150514 BAM aligned CPTAC3 e429d415-c23f-4f61-bedc-18b5abb254ca 5643d6379852be7e6b11f629252ae5a3 {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor"} -C3L-00589.Targeted.T.hg38 C3L-00589 PDA Targeted_Sequencing tumor CPT0063970007_1 c8fdda8f-39ff-4740-b59c-7e680c4cb6a6_targetedsequencing_gdc_realn.bam 4646829639 BAM harmonized CPTAC3 86774abd-20af-4921-8059-1af1d566d1ca b12f8970e683fd44867add30ba995122 {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor"} -C3L-00589.WGS.A C3L-00589 PDA WGS tissue_normal CPT0063990009 CPT0063990009.WholeGenome.RP-1303.bam 79594847985 BAM aligned CPTAC3 597ef470-4073-40cc-9698-7e377d794fcb fc0def8beb2d4819cec23984dd032650 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.WGS.A.hg38 C3L-00589 PDA WGS tissue_normal CPT0063990009 02445bc7-10d8-415e-9f77-d527639fc06c_wgs_gdc_realn.bam 117123440776 BAM harmonized CPTAC3 36faf0bc-ac63-4994-b7b8-6788c21e3929 4266644834a9e70bd9c33fb061d58221 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.WGS.N C3L-00589 PDA WGS blood_normal CPT0065360002 CPT0065360002.WholeGenome.RP-1303.bam 80541019062 BAM aligned CPTAC3 5275aeef-4931-4bdb-98ee-331859d709d2 8bd07827f781972475f3ed34b3f02f87 {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00589.WGS.N.hg38 C3L-00589 PDA WGS blood_normal CPT0065360002 50495b8a-9bca-4f88-af7a-0d1181f82755_gdc_realn.bam 120115071198 BAM harmonized CPTAC3 0de0ca38-c970-40f3-aaab-4ef901ae99b1 9281af5d2e5a6a3aa278155dc8e1e565 {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00589.WGS.T C3L-00589 PDA WGS tumor CPT0063970007 CPT0063970007.WholeGenome.RP-1303.bam 67416487416 BAM aligned CPTAC3 2a1e0872-1529-43f8-aada-91cbac684632 9e5004e3ed1b5b79876b317f9abf445e {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor"} -C3L-00589.WGS.T.hg38 C3L-00589 PDA WGS tumor CPT0063970007 2fe897e3-129e-4d02-a5b7-a4f3e64192e7_gdc_realn.bam 102089108537 BAM harmonized CPTAC3 af432ac5-46f8-410c-9c96-033ef6bfe7fb 4c15f417ed6ec29fcd3a3ad1d48775b1 {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor"} -C3L-00589.WXS.A C3L-00589 PDA WXS tissue_normal CPT0063990009 CPT0063990009.WholeExome.RP-1303.bam 22646558869 BAM aligned CPTAC3 af630119-9b67-40cc-8e5e-6d3212101aeb c34323933cb4b62afd5113aac87f4859 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.WXS.A.hg38 C3L-00589 PDA WXS tissue_normal CPT0063990009 02445bc7-10d8-415e-9f77-d527639fc06c_wxs_gdc_realn.bam 30106344707 BAM harmonized CPTAC3 e45855f7-c5ef-4799-85f3-a6335244e71c 54bac20517a5bcf7b0fd01d61a827b75 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00589.WXS.N C3L-00589 PDA WXS blood_normal CPT0065360002 CPT0065360002.WholeExome.RP-1303.bam 29641473014 BAM aligned CPTAC3 065c8563-cc7c-4eb3-8884-b7f3ccca0844 62c164f011d9b45021ae1cb5ec888e24 {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00589.WXS.N.hg38 C3L-00589 PDA WXS blood_normal CPT0065360002 50495b8a-9bca-4f88-af7a-0d1181f82755_gdc_realn.bam 39944725059 BAM harmonized CPTAC3 c8d751bc-3908-4a87-8bf0-ac3784679c3c 1bc5ff58dec6ec2396fc88b982a95aae {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00589.WXS.T C3L-00589 PDA WXS tumor CPT0063970007_1 CPT0063970007_1.WholeExome.RP-1303.bam 53049437912 BAM aligned CPTAC3 22101c10-0134-411d-a5eb-61dc7332eb01 69903b672acef07d0ea32d18d75fcdfe {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor"} -C3L-00589.WXS.T C3L-00589 PDA WXS tumor CPT0063970007 CPT0063970007.WholeExome.RP-1303.bam 30833898793 BAM aligned CPTAC3 7e206726-ceae-49f3-befd-0e9c2bd49fd7 7036bd38e9ada3a7361766714e48e88b {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor"} -C3L-00589.WXS.T.hg38 C3L-00589 PDA WXS tumor CPT0063970007_1 c8fdda8f-39ff-4740-b59c-7e680c4cb6a6_wxs_gdc_realn.bam 73216789844 BAM harmonized CPTAC3 c918ad1a-40ca-43d2-b62d-ee06f9fdd26b 4b6b835f1b19497c874108cf1f10db42 {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor"} -C3L-00589.WXS.T.hg38 C3L-00589 PDA WXS tumor CPT0063970007 2fe897e3-129e-4d02-a5b7-a4f3e64192e7_gdc_realn.bam 42564104477 BAM harmonized CPTAC3 a12a0e97-4198-4de8-a22f-975bd2ded771 c15fc20cef0db502ba6c8e96dfbd2edb {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor"} -C3L-00598.ADD_fe1f4067.MethArray.Green.T C3L-00598 PDA Methylation_Array tumor CPT0019410010 202176290087_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bfd09202-b7de-4dc2-b517-93ac3704cdc0 565233a4e78c733a4d08b83d90bd94cb {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-00598.ADD_fe1f4067.MethArray.Red.T C3L-00598 PDA Methylation_Array tumor CPT0019410010 202176290087_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3fc12e75-d229-44ce-ad2f-4a7677130b7c 2cc8e25bde9c75a3c4012a601eb53aab {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-00598.ADD_fe1f4067.WGS.T C3L-00598 PDA WGS tumor CPT0019410010 CPT0019410010.WholeGenome.RP-1303.bam 71635096016 BAM aligned CPTAC3 8d518512-f286-446f-bedd-d7ed0c48270f ad47c1d5d4f40dd01fbbc9c497e8fc1c {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-00598.ADD_fe1f4067.WGS.T.hg38 C3L-00598 PDA WGS tumor CPT0019410010 e7c86c73-63a8-4e75-b394-56dc2c0179ba_gdc_realn.bam 104996631654 BAM harmonized CPTAC3 5b203921-5eb7-4ab0-812a-76fe5353f9ec 1eaa85d282a1ad87e295ee187c0d61d3 {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-00598.ADD_fe1f4067.WXS.T C3L-00598 PDA WXS tumor CPT0019410010 CPT0019410010.WholeExome.RP-1303.bam 38655092119 BAM aligned CPTAC3 3f2557c9-3e7f-4e60-bb5a-da109d437f53 7b3f2a59412666abeb91f0a0f12e9583 {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-00598.ADD_fe1f4067.WXS.T.hg38 C3L-00598 PDA WXS tumor CPT0019410010 e7c86c73-63a8-4e75-b394-56dc2c0179ba_gdc_realn.bam 53045937423 BAM harmonized CPTAC3 977a6e57-0ca0-406d-b961-25bc29db9892 b1c40b426da9e0f6e6da7301d1b7c29a {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-00598.miRNA-Seq.S28_L004_R1.T C3L-00598 PDA miRNA-Seq tumor CPT0019410007 181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L004_R1_001.unaln.bam 218737465 BAM S28_L004_R1 unaligned CPTAC3 e1b0bfa6-bd6c-4ef5-bb84-efe879bd137a 8a42191575df0ff644a06976b1e5cba5 {"aliquot_tag": "ALQ_7960e485", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00598.miRNA-Seq.T.hg38 C3L-00598 PDA miRNA-Seq tumor CPT0019410007 dd5f8bd8-28d2-4fa0-bb1c-a1ceb26dfd16_mirnaseq_gdc_realn.bam 241100929 BAM harmonized CPTAC3 aa0de3bf-a63e-47fa-a199-f7aedd595e78 9b395544649c5638c2ef24a3f51138b2 {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor"} -C3L-00598.RNA-Seq.chimeric.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.chimeric.gdc_realn.bam 149022815 BAM chimeric harmonized CPTAC3 2f7ac88a-ff1d-4a8c-927d-8a436bd1782d c6973a67ccbb54eda116966fbda722e1 {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor"} -C3L-00598.RNA-Seq.genomic.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.genomic.gdc_realn.bam 8756876389 BAM genomic harmonized CPTAC3 acf7d2f3-3a7a-4939-a445-cf292d6822cf c45a25d3beb3f6479547d588b2c89e71 {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor"} -C3L-00598.RNA-Seq.S20_L005_R1.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3989517240 FASTQ S20_L005_R1 unaligned CPTAC3 b478f334-dfb5-454c-86c3-bd69233ba106 633a83d0222cf18da91a12013650618c {"aliquot_tag": "ALQ_7960e485", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00598.RNA-Seq.S20_L005_R2.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R2_001.fastq.gz 4073723122 FASTQ S20_L005_R2 unaligned CPTAC3 53a54935-e290-42a5-89c8-d983987b1fc3 059b3e94d876321111b7d7d071eac367 {"aliquot_tag": "ALQ_7960e485", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00598.RNA-Seq.transcriptome.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.transcriptome.gdc_realn.bam 10459971965 BAM transcriptome harmonized CPTAC3 b71a8aba-8323-4cf3-89c8-6333ef777bbf eecf94b05ccb03fde23a22ccd49250bf {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor"} -C3L-00598.Targeted.T C3L-00598 PDA Targeted_Sequencing tumor CPT0019410010_1 CPT0019410010_1.CustomSelection.RP-1303.PDO-18786.bam 5006116430 BAM aligned CPTAC3 fe200a18-cf92-48b3-a015-fb15ef6cae61 49d691358a4694ef1782fa70d2c39ae8 {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor"} -C3L-00598.Targeted.T.hg38 C3L-00598 PDA Targeted_Sequencing tumor CPT0019410010_1 c9763f30-8938-4c73-92a6-5e77b6085e89_targetedsequencing_gdc_realn.bam 7121502495 BAM harmonized CPTAC3 31c7d17c-43b4-494b-a69e-b058ac2e159f c686fb9ca477836c80f722b549949b9f {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor"} -C3L-00598.WGS.N C3L-00598 PDA WGS blood_normal CPT0019480002 CPT0019480002.WholeGenome.RP-1303.bam 71276773943 BAM aligned CPTAC3 57076ebe-b082-4baf-a180-7f416902087f 80e61aaa3fd8632976ff748e5870fa73 {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00598.WGS.N.hg38 C3L-00598 PDA WGS blood_normal CPT0019480002 033ec902-7b53-4260-ba74-cc11cdd77e17_gdc_realn.bam 106296469741 BAM harmonized CPTAC3 3807504c-554a-47af-b7ee-49701c01149e 67efbde2d3bffc6c4204c991b68e429b {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00598.WXS.N C3L-00598 PDA WXS blood_normal CPT0019480002 CPT0019480002.WholeExome.RP-1303.bam 34380498573 BAM aligned CPTAC3 81afc6ee-6698-4a2f-85c9-c85c26344cb7 29618bf44f4cee47bbe8a789e6537d66 {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00598.WXS.N.hg38 C3L-00598 PDA WXS blood_normal CPT0019480002 033ec902-7b53-4260-ba74-cc11cdd77e17_gdc_realn.bam 47512661135 BAM harmonized CPTAC3 803693f4-1923-4561-9f4f-624c62297c8e 75e3bed948b3c2c1446fc75d84cee0f9 {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00598.WXS.T C3L-00598 PDA WXS tumor CPT0019410010_1 CPT0019410010_1.WholeExome.RP-1303.bam 68863445948 BAM aligned CPTAC3 bfda8955-911d-4cb7-8346-631ef644dae4 771c776da1ee5807067825c839760027 {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor"} -C3L-00598.WXS.T.hg38 C3L-00598 PDA WXS tumor CPT0019410010_1 c9763f30-8938-4c73-92a6-5e77b6085e89_wxs_gdc_realn.bam 94693187035 BAM harmonized CPTAC3 45d3fb68-6f0b-4aca-97cc-dbe03f9e358c 63974b94802db980061422e7901c4e4a {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor"} -C3L-00599.MethArray.Green.T C3L-00599 PDA Methylation_Array tumor CPT0081260007 202176290087_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 aeea580a-33d4-405a-9bd9-def98a86b0eb 99710e7806b82789e51e4cd5bb376edc {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor"} -C3L-00599.MethArray.Red.T C3L-00599 PDA Methylation_Array tumor CPT0081260007 202176290087_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 baae18ce-4098-49e6-8389-17caca30b575 28347e0fdded074c0c8c6b53d4ac199a {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor"} -C3L-00599.miRNA-Seq.S48_L006_R1.T C3L-00599 PDA miRNA-Seq tumor CPT0081260010 181012_UNC32-K00270_0124_AH223CBBXY_CAACTA_S48_L006_R1_001.unaln.bam 271321177 BAM S48_L006_R1 unaligned CPTAC3 20a1ef7f-a834-47cc-ae3d-169c44b255b9 226793fcef93be5b8dde15d858b4b217 {"aliquot_tag": "ALQ_b6c62a26", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00599.miRNA-Seq.T.hg38 C3L-00599 PDA miRNA-Seq tumor CPT0081260010 ed4847ac-5fc9-4b1d-81bb-b798ce90451a_mirnaseq_gdc_realn.bam 298462902 BAM harmonized CPTAC3 1db9c07f-db5c-4576-9343-e1b51aeafe00 34282c71c83ab78d260836d30794ddb3 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor"} -C3L-00599.RNA-Seq.chimeric.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.chimeric.gdc_realn.bam 44165885 BAM chimeric harmonized CPTAC3 db3f8e3e-0c30-4800-bd24-7ea7c62b4c28 76ea7903175e79712240279b0063c844 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor"} -C3L-00599.RNA-Seq.genomic.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.genomic.gdc_realn.bam 9799687205 BAM genomic harmonized CPTAC3 ae55d6c0-8741-4174-a264-8c5cf58be624 fb759cc0f8e29e90dfd24e28ddc360e4 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor"} -C3L-00599.RNA-Seq.S3_L001_R1.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3985199647 FASTQ S3_L001_R1 unaligned CPTAC3 1670ad87-2708-4ed6-998a-782e7b346522 8ada48b6960e0e7ddf8f9e33d8705724 {"aliquot_tag": "ALQ_b6c62a26", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00599.RNA-Seq.S3_L001_R2.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3906051021 FASTQ S3_L001_R2 unaligned CPTAC3 fe9a475f-851e-4d88-be9e-cf0ef2922c26 6a8d0943dae3931916b9d96153b0a965 {"aliquot_tag": "ALQ_b6c62a26", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00599.RNA-Seq.transcriptome.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.transcriptome.gdc_realn.bam 9831050625 BAM transcriptome harmonized CPTAC3 a7688bd4-e8e6-4195-91f9-3ea5bf837f71 d9abef8f784d6885cce0384407c44d72 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor"} -C3L-00599.Targeted.T C3L-00599 PDA Targeted_Sequencing tumor CPT0081260007_1 CPT0081260007_1.CustomSelection.RP-1303.PDO-18786.bam 4218438220 BAM aligned CPTAC3 4df464fc-bc8c-425a-949b-9b58fe143232 b2db3fbd382174d3cb180d7be6e322af {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor"} -C3L-00599.Targeted.T.hg38 C3L-00599 PDA Targeted_Sequencing tumor CPT0081260007_1 4c871aba-34a3-4b82-b9b7-7c7222835d7e_targetedsequencing_gdc_realn.bam 6094548138 BAM harmonized CPTAC3 26914441-5bef-4c50-93be-105befa27651 64826df31873d5bbc9cb985c30f596f6 {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor"} -C3L-00599.WGS.N C3L-00599 PDA WGS blood_normal CPT0081300002 CPT0081300002.WholeGenome.RP-1303.bam 59708039220 BAM aligned CPTAC3 12fed749-9601-44f7-8ab4-2ec891747852 3ced23af3161035536c1bf3593efb434 {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00599.WGS.N.hg38 C3L-00599 PDA WGS blood_normal CPT0081300002 23d02b3d-196e-4443-a75d-76965c81e787_gdc_realn.bam 89858071093 BAM harmonized CPTAC3 7b27366f-9c9d-43e1-873e-ab01d605b5f2 adaae8a365d7d95e275d8068ac2d2daf {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00599.WGS.T C3L-00599 PDA WGS tumor CPT0081260007 CPT0081260007.WholeGenome.RP-1303.bam 66864571015 BAM aligned CPTAC3 5d9fc3d5-0809-4fca-9d11-9d7617cdb958 fecac4d7d8fa99f5ca0151e8ff1b3b1a {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor"} -C3L-00599.WGS.T.hg38 C3L-00599 PDA WGS tumor CPT0081260007 51283b99-0eb7-47d9-9d41-fa7f4cb436e3_gdc_realn.bam 100865493022 BAM harmonized CPTAC3 bd565946-5fb1-47e4-995a-3614448430ce db280394ceb4669d22de883ab2ff79e1 {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor"} -C3L-00599.WXS.N C3L-00599 PDA WXS blood_normal CPT0081300002 CPT0081300002.WholeExome.RP-1303.bam 24590974633 BAM aligned CPTAC3 363e78cb-9042-40ea-af48-98ac7510f897 afb3f8378f6bbbef61a95ce1c19de24f {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00599.WXS.N.hg38 C3L-00599 PDA WXS blood_normal CPT0081300002 23d02b3d-196e-4443-a75d-76965c81e787_gdc_realn.bam 32963736653 BAM harmonized CPTAC3 10d55ec9-51c2-4c00-8a95-0cb25ce09736 1cc4275d480f0ea2cfb807875c348c46 {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00599.WXS.T C3L-00599 PDA WXS tumor CPT0081260007_1 CPT0081260007_1.WholeExome.RP-1303.bam 53749566976 BAM aligned CPTAC3 d4b1298b-8b88-4965-b0ec-09d47f69f329 9c8d7a4a2cba605877e0137d55620986 {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor"} -C3L-00599.WXS.T C3L-00599 PDA WXS tumor CPT0081260007 CPT0081260007.WholeExome.RP-1303.bam 30380355011 BAM aligned CPTAC3 2ceaf724-4525-481a-877f-609c12aee1eb 39c5b225be69ff3a7371cf5fe889d3fc {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor"} -C3L-00599.WXS.T.hg38 C3L-00599 PDA WXS tumor CPT0081260007_1 4c871aba-34a3-4b82-b9b7-7c7222835d7e_wxs_gdc_realn.bam 74295194610 BAM harmonized CPTAC3 ea5a9dbb-2d2e-42ed-9b19-c89445a3f21f 70b0174a1e274031835dc04736e45889 {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor"} -C3L-00599.WXS.T.hg38 C3L-00599 PDA WXS tumor CPT0081260007 51283b99-0eb7-47d9-9d41-fa7f4cb436e3_gdc_realn.bam 42058408107 BAM harmonized CPTAC3 870183f8-ca45-4eac-949b-eecbdf753098 28a7d87a972e65d2ea662bbd712bce50 {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor"} -C3L-00601.MethArray.Green.T C3L-00601 UCEC Methylation_Array tumor CPT0007600009 202176290105_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 99ad091d-778b-4a83-9d04-ba38d826fcfc 5ad4b4047a5f3952ec641575954a0eab {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor"} -C3L-00601.MethArray.Red.T C3L-00601 UCEC Methylation_Array tumor CPT0007600009 202176290105_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 f58c4978-d966-4e3e-8dc3-9a72f12e09e0 0e58a8e9168ff2db9250d85bf0569622 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor"} -C3L-00601.miRNA-Seq.A.hg38 C3L-00601 UCEC miRNA-Seq tissue_normal CPT0007660006 24eba2cd-428c-4263-b2f2-2f95dda7e6e5_mirnaseq_gdc_realn.bam 283773517 BAM harmonized CPTAC3 50c8117d-52f4-43fa-a6fe-797d52e7a1e6 278d007828b921281fb4931b7054f076 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.miRNA-Seq.S48_L003_R1.T C3L-00601 UCEC miRNA-Seq tumor CPT0007600006 181113_UNC31-K00269_0164_AH23NNBBXY_GGTAGC_S48_L003_R1_001.unaln.bam 181182387 BAM S48_L003_R1 unaligned CPTAC3 4d9686f5-e9e7-4ff5-9b33-f822709bc24c 39fb32d8fe3536cfcb1d882bfe153d7a {"aliquot_tag": "ALQ_e25a276b", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00601.miRNA-Seq.S5_L006_R1.A C3L-00601 UCEC miRNA-Seq tissue_normal CPT0007660006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L006_R1_001.unaln.bam 247075747 BAM S5_L006_R1 unaligned CPTAC3 ce0603d7-3f18-473f-9fae-f9c8101b261b 0dfdfe98b7e1f895ca6d27b2aabd8ba9 {"aliquot_tag": "ALQ_6d1ad2cb", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.miRNA-Seq.T.hg38 C3L-00601 UCEC miRNA-Seq tumor CPT0007600006 d80b23ed-a7f0-43d1-8a9e-4de509d98f35_mirnaseq_gdc_realn.bam 213328191 BAM harmonized CPTAC3 e0388603-863a-4448-a1db-be4bdcc2950c 3e538817c7b9dbebf292b12a6b1d1587 {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.chimeric.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.chimeric.gdc_realn.bam 138542319 BAM chimeric harmonized CPTAC3 e7ae3bfb-9e89-493e-8ef4-37f9072c584d f415bc5bebd47138dc214b3ded6004e5 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.RNA-Seq.chimeric.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.chimeric.gdc_realn.bam 107771724 BAM chimeric harmonized CPTAC3 ff51f8ff-5e04-4cf2-89aa-674768ba7acf 48ef2f36b2f10af65a6ef2779b8f812b {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.chimeric.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.chimeric.gdc_realn.bam 257658952 BAM chimeric harmonized CPTAC3 e015c3a0-200c-4312-bae8-39088a1993a5 a1e90150a19cc8a4eea7cc8915427f20 {"aliquot_tag": "ALQ_927aa77f", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.genomic.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.genomic.gdc_realn.bam 8386612191 BAM genomic harmonized CPTAC3 5d961309-ae14-4228-a315-0c04b8005a9e d1c9a3bfd4488cc2e9b20f877b72c105 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.RNA-Seq.genomic.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.genomic.gdc_realn.bam 9429485148 BAM genomic harmonized CPTAC3 a22a032f-103c-4026-8393-569d7d56e4ff c23021a489b01ecd6f2ce0222d873532 {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.genomic.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.genomic.gdc_realn.bam 13435270649 BAM genomic harmonized CPTAC3 ff63675f-842e-4157-bd94-bc780dd55259 af873bd1657c0bc656b5450f4d3ea616 {"aliquot_tag": "ALQ_927aa77f", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.S1_L002_R1.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R1_001.fastq.gz 3897339245 FASTQ S1_L002_R1 unaligned CPTAC3 15a20d32-beec-4388-9408-480db8a1ae5c 198f7d591856745d7a7d9660bb53aa5b {"aliquot_tag": "ALQ_6d1ad2cb", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.RNA-Seq.S1_L002_R2.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R2_001.fastq.gz 4367574210 FASTQ S1_L002_R2 unaligned CPTAC3 0a6f5a3c-53aa-41bc-8c68-7292e1e6b059 93ec51764c583ad7281bc1af97329dcb {"aliquot_tag": "ALQ_6d1ad2cb", "sample": "S1", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.RNA-Seq.S28_R1.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R1_001.fastq.gz 8307203143 FASTQ S28_R1 unaligned CPTAC3 efdad6a9-6787-4090-9eb6-40245601335e 7409f60a570095ae3578cfdfb440a81d {"aliquot_tag": "ALQ_927aa77f", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.S28_R2.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R2_001.fastq.gz 8825931211 FASTQ S28_R2 unaligned CPTAC3 d770eafb-e72c-4d56-8fa6-cc53765fa121 aff055cd0e9b730f9b407d86cb0c1973 {"aliquot_tag": "ALQ_927aa77f", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.S3_L001_R1.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4913164581 FASTQ S3_L001_R1 unaligned CPTAC3 01b9fd20-8317-4067-84cf-e73dd8f92572 450ddc92bde3596b8317a5694b57ca0c {"aliquot_tag": "ALQ_e25a276b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.S3_L001_R2.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 5086037699 FASTQ S3_L001_R2 unaligned CPTAC3 5efbd40c-4225-4a7f-9920-71357ccf41f0 1c90821349388d77a2d021e3d0410ce6 {"aliquot_tag": "ALQ_e25a276b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.transcriptome.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.transcriptome.gdc_realn.bam 9753659626 BAM transcriptome harmonized CPTAC3 90ce20bf-da8b-4842-a2ad-2b4e7da06bc1 1c989897a2107477d2440a38a2d19414 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.RNA-Seq.transcriptome.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.transcriptome.gdc_realn.bam 13528075856 BAM transcriptome harmonized CPTAC3 30b2de31-566e-459f-bdc5-cb078fc15f25 b59592731839207cb58bdc31e514d3c4 {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor"} -C3L-00601.RNA-Seq.transcriptome.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.transcriptome.gdc_realn.bam 8731304008 BAM transcriptome harmonized CPTAC3 55b1b78d-6322-406c-9a97-6b99e0490fde c5237fa65aba83e7c7e036a502f1122b {"aliquot_tag": "ALQ_927aa77f", "gdc_sample_type": "Primary Tumor"} -C3L-00601.WGS.A C3L-00601 UCEC WGS tissue_normal CPT0007660009 CPT0007660009.WholeGenome.RP-1303.bam 65241355364 BAM aligned CPTAC3 92df9e4d-bf90-4d35-ab50-f64891082576 ab0573cde3749647d7d271b4db9f5f4f {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.WGS.A.hg38 C3L-00601 UCEC WGS tissue_normal CPT0007660009 babcb183-1b5a-4b68-b09f-636e02e71030_wgs_gdc_realn.bam 94440078384 BAM harmonized CPTAC3 1563405d-7781-4421-a33d-07a7a7b786a5 ed4e49de9d640dacce7a311e9eb11295 {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.WGS.N C3L-00601 UCEC WGS blood_normal CPT0002900002 CPT0002900002.WholeGenome.RP-1303.bam 68273223071 BAM aligned CPTAC3 b169fcff-1091-4d23-beac-c0c65f00ca3b a6665cc731f7d5d0bfbba98a7b677ba7 {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal"} -C3L-00601.WGS.N.hg38 C3L-00601 UCEC WGS blood_normal CPT0002900002 50c4a6f8-9efd-4898-a962-a7d89078b9b5_gdc_realn.bam 99301680248 BAM harmonized CPTAC3 db638288-3dbf-436b-8444-56185109f1eb 4fa2b0dca21259d933aeeccce03e4cba {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal"} -C3L-00601.WGS.T C3L-00601 UCEC WGS tumor CPT0007600009 CPT0007600009.WholeGenome.RP-1303.bam 59224492246 BAM aligned CPTAC3 11e21e56-f407-45c8-9fca-899fb716f2b9 972322f05deb20d84deb776696ffdfb4 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor"} -C3L-00601.WGS.T.hg38 C3L-00601 UCEC WGS tumor CPT0007600009 84ccff59-af29-4cbf-8068-185a2e2b4c1f_gdc_realn.bam 87876886198 BAM harmonized CPTAC3 50107236-d227-4b6c-bd75-b9e860965ea2 6aa823f7bfd6286e20f4d3fbf1db9480 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor"} -C3L-00601.WXS.A C3L-00601 UCEC WXS tissue_normal CPT0007660009 CPT0007660009.WholeExome.RP-1303.bam 31116065931 BAM aligned CPTAC3 31722bbb-0ebb-4e40-804b-a9727ba9fa0f d4e9f8a4ea21d27dd1edd4a7cbec0f13 {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.WXS.A.hg38 C3L-00601 UCEC WXS tissue_normal CPT0007660009 babcb183-1b5a-4b68-b09f-636e02e71030_wxs_gdc_realn.bam 42017521402 BAM harmonized CPTAC3 6cdc37c9-2e78-4d61-b4eb-9abdf5776b9f 40f6c9682bd1a8eff1849753e9dc9f60 {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00601.WXS.N C3L-00601 UCEC WXS blood_normal CPT0002900002 CPT0002900002.WholeExome.RP-1303.bam 24996669333 BAM aligned CPTAC3 234078e6-2b21-40f4-8aaa-2c1815f20157 8ccabd22c56efd7c69e2d5ac334b19a8 {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal"} -C3L-00601.WXS.N.hg38 C3L-00601 UCEC WXS blood_normal CPT0002900002 50c4a6f8-9efd-4898-a962-a7d89078b9b5_gdc_realn.bam 34027249380 BAM harmonized CPTAC3 b7d63e3b-56bd-446b-a6ef-c6197ef84a94 9adf404f85ef02c987a96710a04a6d3b {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal"} -C3L-00601.WXS.T C3L-00601 UCEC WXS tumor CPT0007600009 CPT0007600009.WholeExome.RP-1303.bam 25918710266 BAM aligned CPTAC3 d301c51c-52e8-4809-a1d3-8bb27f19c81e 7887a751d4deaeb3abbf868a0da3c0fa {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor"} -C3L-00601.WXS.T.hg38 C3L-00601 UCEC WXS tumor CPT0007600009 84ccff59-af29-4cbf-8068-185a2e2b4c1f_gdc_realn.bam 35177354356 BAM harmonized CPTAC3 52aa202f-2d6e-4b6d-bbae-49bdda1d0f3c dd2ce9a3fd7157d1e95c88a36055de20 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor"} -C3L-00603.MethArray.Green.A C3L-00603 LSCC Methylation_Array tissue_normal CPT0064050006 203219650136_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f3e6f156-2550-4950-b182-a0de65046ae9 0e33443cbfa2013b77988a0db32bf596 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.MethArray.Green.T C3L-00603 LSCC Methylation_Array tumor CPT0064040006 202163550115_R07C01_Grn.idat 13676230 IDAT Green NA CPTAC3 21499507-cb1f-40b1-aa64-885336756fda cb955e88407091e48c58fc172423d70b {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor"} -C3L-00603.MethArray.Red.A C3L-00603 LSCC Methylation_Array tissue_normal CPT0064050006 203219650136_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 8aa81d0b-c932-4a4c-9d2f-b41cc1c3b292 7e1bb25ffdc4a3877a4a1aeaa000fd6f {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.MethArray.Red.T C3L-00603 LSCC Methylation_Array tumor CPT0064040006 202163550115_R07C01_Red.idat 13676230 IDAT Red NA CPTAC3 f0019c3b-62e1-4fc7-abcc-a0b6303bbf36 b080f96f0ac0982143460a85f2dd9cdb {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor"} -C3L-00603.miRNA-Seq.A.hg38 C3L-00603 LSCC miRNA-Seq tissue_normal CPT0064050008 fa76f1e8-4a30-48cc-8bf5-06f328bcb1c0_mirnaseq_gdc_realn.bam 189650830 BAM harmonized CPTAC3 d7a190c3-91ad-4c2d-bb5e-79dfd559cb50 a0b59084d732d62c9557e5c6d3cc513e {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.miRNA-Seq.S48_L005_R1.A C3L-00603 LSCC miRNA-Seq tissue_normal CPT0064050008 181113_UNC31-K00269_0164_AH23NNBBXY_GGTAGC_S48_L005_R1_001.unaln.bam 167243604 BAM S48_L005_R1 unaligned CPTAC3 279278d0-8715-4494-8998-f857e5086560 7b1217e124395d8c41ee280d331e61ba {"aliquot_tag": "ALQ_ecdc751b", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.miRNA-Seq.S5_L003_R1.T C3L-00603 LSCC miRNA-Seq tumor CPT0064040009 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGAGC_S5_L003_R1_001.unaln.bam 273129140 BAM S5_L003_R1 unaligned CPTAC3 6a5bb61d-b8d0-473a-ac95-62fe22f07645 d561ed2ce02583fbd2844d14bca1f786 {"aliquot_tag": "ALQ_a6bb6c3d", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00603.miRNA-Seq.T.hg38 C3L-00603 LSCC miRNA-Seq tumor CPT0064040009 0d922fb6-ea4b-49e3-86ec-9096d5e86e2e_mirnaseq_gdc_realn.bam 293327578 BAM harmonized CPTAC3 7027cc7f-3200-46d8-85d0-d62bdf2392a4 93066d8d2c237aa5e2e885e955cd850d {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor"} -C3L-00603.RNA-Seq.chimeric.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.chimeric.gdc_realn.bam 41461935 BAM chimeric harmonized CPTAC3 f3c3292b-a903-4ec5-a89f-3847df5e9d26 8905e7cccee9b586576d3b6c2f2cb9ef {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.RNA-Seq.chimeric.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.chimeric.gdc_realn.bam 26188212 BAM chimeric harmonized CPTAC3 cf34df7b-6a44-482f-9f78-e529e575608b 6af2f175855a383a4edb285008643d76 {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor"} -C3L-00603.RNA-Seq.genomic.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.genomic.gdc_realn.bam 8200830182 BAM genomic harmonized CPTAC3 06905783-17eb-4236-9812-4c3fa13ec96a 23e2056ec6cecbc5c48abf5aa5050ba8 {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.RNA-Seq.genomic.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.genomic.gdc_realn.bam 7429993065 BAM genomic harmonized CPTAC3 a2235e4f-a3d9-4963-9dff-8950500a01b8 98900a19207da2e516453ff207cd01c8 {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor"} -C3L-00603.RNA-Seq.S2_L007_R1.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R1_001.fastq.gz 3679179574 FASTQ S2_L007_R1 unaligned CPTAC3 6da4e491-3134-4e63-bec0-2cf5c58e0e93 85684c46e8a20607be0f235de3fe41f9 {"aliquot_tag": "ALQ_a6bb6c3d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00603.RNA-Seq.S2_L007_R2.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R2_001.fastq.gz 3790870120 FASTQ S2_L007_R2 unaligned CPTAC3 5481f05c-19c7-4ecc-803b-8e18a2e9aa0e 80abcba7c54824bdbbcd4e199f0cce5c {"aliquot_tag": "ALQ_a6bb6c3d", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00603.RNA-Seq.S7_L002_R1.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3835017783 FASTQ S7_L002_R1 unaligned CPTAC3 73708fbb-5e14-4ca1-9560-e6e5cb912924 4718e447b824572ea597a3a0de48bcc0 {"aliquot_tag": "ALQ_ecdc751b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.RNA-Seq.S7_L002_R2.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4240580558 FASTQ S7_L002_R2 unaligned CPTAC3 b44f5c79-6a5d-4639-ba5e-5111379cff8a bb9d7f25a6b78743b57b580adf7b6acd {"aliquot_tag": "ALQ_ecdc751b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.RNA-Seq.transcriptome.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.transcriptome.gdc_realn.bam 9760775911 BAM transcriptome harmonized CPTAC3 58f321bf-4c20-4f71-99e9-b6c59a77c9ab 9d59c6ce72b92190876e4b529a7f0246 {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.RNA-Seq.transcriptome.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.transcriptome.gdc_realn.bam 9258228899 BAM transcriptome harmonized CPTAC3 297dad74-85be-497b-881d-44b82d8ec0ed e28e626695c4e2d0271ebb70c0faea8f {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor"} -C3L-00603.WGS.A C3L-00603 LSCC WGS tissue_normal CPT0064050006 CPT0064050006.WholeGenome.RP-1303.bam 55338774934 BAM aligned CPTAC3 7c330c81-95f4-4935-998d-309923ba5806 9173d9386e60e9d85f622d7e8b92f234 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.WGS.A.hg38 C3L-00603 LSCC WGS tissue_normal CPT0064050006 123bd489-c6dc-474d-8516-cb98dec889bb_wgs_gdc_realn.bam 80462415116 BAM harmonized CPTAC3 9e0a1264-08b2-4675-ae8f-df54b2455b55 38ab881c3939353fda5f61aaf22dd490 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.WGS.N C3L-00603 LSCC WGS blood_normal CPT0065370002 CPT0065370002.WholeGenome.RP-1303.bam 72610587825 BAM aligned CPTAC3 b4510f9d-53bc-4694-a026-8b26ab0db182 c19f9ab1458201a1fe455b5273dc0e50 {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00603.WGS.N.hg38 C3L-00603 LSCC WGS blood_normal CPT0065370002 f36cc437-ce45-4922-84b4-ce0b89a29787_gdc_realn.bam 113637734370 BAM harmonized CPTAC3 e257e919-586e-4b59-a437-cf85f7302a0a 255dcfccbe2f4a5a7511fe33b9d2532b {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00603.WGS.T C3L-00603 LSCC WGS tumor CPT0064040006 CPT0064040006.WholeGenome.RP-1303.bam 72064936285 BAM aligned CPTAC3 8eb04ec8-24a6-4dd0-9d00-b7ea9cb4c8c4 4fffb423e03a494830ccbad7608b2fb2 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor"} -C3L-00603.WGS.T.hg38 C3L-00603 LSCC WGS tumor CPT0064040006 07d0fbf7-5440-4262-965f-c1cc1a739ea4_gdc_realn.bam 114311172616 BAM harmonized CPTAC3 de305e9b-c689-46e7-8199-5a2201a711eb 67fde82187bc5144f9d7e08cf60b5326 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor"} -C3L-00603.WXS.A C3L-00603 LSCC WXS tissue_normal CPT0064050006 CPT0064050006.WholeExome.RP-1303.bam 32452930144 BAM aligned CPTAC3 416c420c-9dee-43c8-ad68-b065d1d72159 3ccddfe2771de5e6c4c2213e4fe54a28 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.WXS.A.hg38 C3L-00603 LSCC WXS tissue_normal CPT0064050006 123bd489-c6dc-474d-8516-cb98dec889bb_wxs_gdc_realn.bam 43564524459 BAM harmonized CPTAC3 4534d251-625c-42b2-bb08-616e868c8560 2a529cfda6897fb9d9e8a1b6089b3f85 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00603.WXS.N C3L-00603 LSCC WXS blood_normal CPT0065370002 CPT0065370002.WholeExome.RP-1303.bam 30701628980 BAM aligned CPTAC3 fddefc94-8efc-4b60-b2c3-a92b4ad5f20e 088a6f3a095fab48a4869e24b5cf145d {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00603.WXS.N.hg38 C3L-00603 LSCC WXS blood_normal CPT0065370002 f36cc437-ce45-4922-84b4-ce0b89a29787_gdc_realn.bam 40949474640 BAM harmonized CPTAC3 760d6f80-158b-4877-b7a9-4a9339da9b3f ca58dbed2fdcd4beefc56f748b059df6 {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00603.WXS.T C3L-00603 LSCC WXS tumor CPT0064040006 CPT0064040006.WholeExome.RP-1303.bam 27521261893 BAM aligned CPTAC3 6e2f9050-143d-4bc1-8814-88d5e39574ec 45e7a2add9ad2f5325ba07277a037d81 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor"} -C3L-00603.WXS.T.hg38 C3L-00603 LSCC WXS tumor CPT0064040006 07d0fbf7-5440-4262-965f-c1cc1a739ea4_gdc_realn.bam 37894491789 BAM harmonized CPTAC3 4f9fb2d6-54be-4eae-a522-6af470371606 3721460439deb1e0dab19f4a2a858e40 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor"} -C3L-00604.MethArray.Green.A C3L-00604 LUAD Methylation_Array tissue_normal CPT0063840009 203028200048_R04C01_Grn.idat 13676238 IDAT Green NA CPTAC3 b7331e7b-ceeb-4867-b496-2a3c23893e5c e15c41969988fd2994e7ca4e867368c4 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.MethArray.Green.T C3L-00604 LUAD Methylation_Array tumor CPT0063810006 202184900111_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 80129805-9437-4f78-9140-824157dc791c 77f7fee856130e9cb7ed0665a477831b {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor"} -C3L-00604.MethArray.Red.A C3L-00604 LUAD Methylation_Array tissue_normal CPT0063840009 203028200048_R04C01_Red.idat 13676238 IDAT Red NA CPTAC3 72a2a5ca-fd73-4c87-bb02-e15fb974ac1a 0b45b139d034edbe7cc6d88eecbab27b {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.MethArray.Red.T C3L-00604 LUAD Methylation_Array tumor CPT0063810006 202184900111_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 934e88e6-ea6e-4fd0-b37b-109e5112ff3a 11b423104c5a498a9efc2cf1a4979110 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor"} -C3L-00604.miRNA-Seq.A.hg38 C3L-00604 LUAD miRNA-Seq tissue_normal CPT0063840006 bf663351-5534-48c9-ad5b-134accfff4d8_mirnaseq_gdc_realn.bam 208835270 BAM harmonized CPTAC3 836d5c42-7231-4aa6-bb0b-c51c3554092e 25f607cfa25b098bf9e34e24af93d73e {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.miRNA-Seq.S36_L002_R1.A C3L-00604 LUAD miRNA-Seq tissue_normal CPT0063840006 181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L002_R1_001.unaln.bam 181311716 BAM S36_L002_R1 unaligned CPTAC3 61ef0676-b2ca-4b98-9d83-845a15feeea6 339484b1a16a3e6b977f7606b7ac683d {"aliquot_tag": "ALQ_1ff0cd4f", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.miRNA-Seq.S8_L003_R1.T C3L-00604 LUAD miRNA-Seq tumor CPT0063810009 180924_UNC31-K00269_0154_AHWTMLBBXX_GAGTGG_S8_L003_R1_001.unaln.bam 286330505 BAM S8_L003_R1 unaligned CPTAC3 5efc63ba-37ea-49ec-b4a8-223ec3db888d 76f3bac271f66fba1f25f656f9bd7680 {"aliquot_tag": "ALQ_47af5fae", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00604.miRNA-Seq.T.hg38 C3L-00604 LUAD miRNA-Seq tumor CPT0063810009 b9761e98-e2a9-4256-8820-4d33050d97f9_mirnaseq_gdc_realn.bam 311491986 BAM harmonized CPTAC3 0095f685-ff26-47ee-a0b8-aef15ec4218e a2f6fea4a2627b8562c1e143671c9f2c {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor"} -C3L-00604.RNA-Seq.chimeric.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.chimeric.gdc_realn.bam 40562664 BAM chimeric harmonized CPTAC3 2c23a036-def4-4fba-a8ce-d19f0fa32e29 a11687fed784d46c2d611871be555fc4 {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.RNA-Seq.chimeric.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.chimeric.gdc_realn.bam 23259039 BAM chimeric harmonized CPTAC3 f173ba80-7513-462f-bdf5-f84e7726498a db3583b47e4a412218dc54c7837fdcc2 {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor"} -C3L-00604.RNA-Seq.genomic.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.genomic.gdc_realn.bam 6488680978 BAM genomic harmonized CPTAC3 5f750b49-c0de-45f4-9665-a3ce85f4bacf 8425f6870000976e09a81f34ceb8bfdb {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.RNA-Seq.genomic.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.genomic.gdc_realn.bam 7975043210 BAM genomic harmonized CPTAC3 0c2efc1e-e0e4-43b7-b6b5-98137148e2e1 235de44aefe3e1e3c9de72657550fabc {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor"} -C3L-00604.RNA-Seq.S22_L006_R1.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R1_001.fastq.gz 3279709309 FASTQ S22_L006_R1 unaligned CPTAC3 a0a9cadd-f144-4e0c-853a-8b0abbc263cb f3356a80ba0af9d3ce20762e9a478390 {"aliquot_tag": "ALQ_1ff0cd4f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.RNA-Seq.S22_L006_R2.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R2_001.fastq.gz 3473897504 FASTQ S22_L006_R2 unaligned CPTAC3 3c2dfe71-2560-439a-b977-5455f44a0947 10aa0489cd2fa537600459d15bf8a7de {"aliquot_tag": "ALQ_1ff0cd4f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.RNA-Seq.S3_L007_R1.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 3718960922 FASTQ S3_L007_R1 unaligned CPTAC3 cddf0288-f8e6-4567-861e-c89f00177e9e e1d1369096e133aa3e50999dd099aa7b {"aliquot_tag": "ALQ_47af5fae", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00604.RNA-Seq.S3_L007_R2.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 3883610547 FASTQ S3_L007_R2 unaligned CPTAC3 334c4106-ba70-4db1-94eb-4d7138a069bc e74ce0d733148feb4066d680c7ae4f07 {"aliquot_tag": "ALQ_47af5fae", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00604.RNA-Seq.transcriptome.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.transcriptome.gdc_realn.bam 7630674522 BAM transcriptome harmonized CPTAC3 76ef5b1f-33d3-4e68-8e96-635d51ea9c7e e24b0595fc85a8f970f78e48b2ac86ec {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.RNA-Seq.transcriptome.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.transcriptome.gdc_realn.bam 10748389675 BAM transcriptome harmonized CPTAC3 f7ab1789-3212-4abd-9c34-02288b31cc4c fb7b52aef9fdfabd9e283d8ee05d22ed {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor"} -C3L-00604.WGS.A C3L-00604 LUAD WGS tissue_normal CPT0063840009 CPT0063840009.WholeGenome.RP-1303.bam 57695442688 BAM aligned CPTAC3 b54c2d6c-cdbe-44d8-a1b2-0b22ba5a20fa 09a03d8410301c6cb7fe9b3220102a73 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.WGS.A.hg38 C3L-00604 LUAD WGS tissue_normal CPT0063840009 d7158a62-4b6b-4102-8459-56e0755e2751_wgs_gdc_realn.bam 85223667769 BAM harmonized CPTAC3 bf5851fc-243e-4d15-995d-be6fd603bea6 aa5d649402a7f3df4b5c3b799f143be3 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.WGS.N C3L-00604 LUAD WGS blood_normal CPT0065330002 CPT0065330002.WholeGenome.RP-1303.bam 63051276802 BAM aligned CPTAC3 9b9355e3-0415-44bc-a7b2-f3c6f9dd4d5f 2a07d170e2cceffc1a341b0d7b67f980 {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00604.WGS.N.hg38 C3L-00604 LUAD WGS blood_normal CPT0065330002 c8513c30-14af-4dac-89e8-03450586d9f6_gdc_realn.bam 94701123417 BAM harmonized CPTAC3 5f20f01b-b4e8-4e8a-9dba-8351c388f10c 69005120c5e3022710b1be163fa076ac {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00604.WGS.T C3L-00604 LUAD WGS tumor CPT0063810006 CPT0063810006.WholeGenome.RP-1303.bam 86859007316 BAM aligned CPTAC3 3552f7df-c6d5-4639-bf7a-5313b6669dbd 5c802b077e5d89e94003df1ec60bd48e {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor"} -C3L-00604.WGS.T.hg38 C3L-00604 LUAD WGS tumor CPT0063810006 1464b756-be16-4e28-a7c9-29d5bc6172e9_gdc_realn.bam 134796692358 BAM harmonized CPTAC3 a80207e6-c13e-478a-b5d0-62389c04ddb5 bb07af7aa1e65410cf8af7e1b3ca1da8 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor"} -C3L-00604.WXS.A C3L-00604 LUAD WXS tissue_normal CPT0063840009 CPT0063840009.WholeExome.RP-1303.bam 43452532752 BAM aligned CPTAC3 a009a68f-dab9-483c-8836-dd0aaac6b983 0f839a33bee1422ac200656c47fbe161 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.WXS.A.hg38 C3L-00604 LUAD WXS tissue_normal CPT0063840009 d7158a62-4b6b-4102-8459-56e0755e2751_wxs_gdc_realn.bam 59404569432 BAM harmonized CPTAC3 39ce1d72-d7ba-4a33-8083-91f449344ff9 e01f681e3a905710bb6d974be29abe6f {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00604.WXS.N C3L-00604 LUAD WXS blood_normal CPT0065330002 CPT0065330002.WholeExome.RP-1303.bam 25211390455 BAM aligned CPTAC3 87c92b86-e153-41f1-9d10-939568af2c6d e6939045db0c7ff4f32297bd34996654 {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00604.WXS.N.hg38 C3L-00604 LUAD WXS blood_normal CPT0065330002 c8513c30-14af-4dac-89e8-03450586d9f6_gdc_realn.bam 33615478070 BAM harmonized CPTAC3 6a6f0f73-df31-44b1-89c6-d871e4c7a050 f29a43175ff0f017cc65b9238b9865ef {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00604.WXS.T C3L-00604 LUAD WXS tumor CPT0063810006 CPT0063810006.WholeExome.RP-1303.bam 32885805162 BAM aligned CPTAC3 5c3d6f28-560b-4a61-a5a6-572094032df8 ecff2c5d5b3bad9439038e9b11a58466 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor"} -C3L-00604.WXS.T.hg38 C3L-00604 LUAD WXS tumor CPT0063810006 1464b756-be16-4e28-a7c9-29d5bc6172e9_gdc_realn.bam 45869615210 BAM harmonized CPTAC3 8c6f6680-780f-4d40-9056-1a28f2d26d2a 09b6035ecae699b189aa19a08036c994 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.MethArray.Green.T C3L-00605 UCEC Methylation_Array tumor CPT0063890006 202176290047_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1bbe8e82-f96a-4892-aacc-19abebf6af55 ddd85365d158e2fbbdfa772d2f111614 {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor"} -C3L-00605.MethArray.Red.T C3L-00605 UCEC Methylation_Array tumor CPT0063890006 202176290047_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 ac50c261-0d45-4b0a-ac84-7d525463bb81 7a866d90b4519c649a77c178bf7338dc {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor"} -C3L-00605.miRNA-Seq.S7_L003_R1.T C3L-00605 UCEC miRNA-Seq tumor CPT0063890009 180924_UNC31-K00269_0154_AHWTMLBBXX_GGTAGC_S7_L003_R1_001.unaln.bam 193487607 BAM S7_L003_R1 unaligned CPTAC3 323821c6-8c52-4939-ab11-0157414cfcb4 581d81dae32c46c8ab2d32ba438d2b83 {"aliquot_tag": "ALQ_77df146f", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00605.miRNA-Seq.T.hg38 C3L-00605 UCEC miRNA-Seq tumor CPT0063890009 e9da758a-8f43-411d-8d6d-b0b58207f539_mirnaseq_gdc_realn.bam 214888088 BAM harmonized CPTAC3 6d273d51-1d22-4f71-8a64-39b1b6c4fd57 cd62d794fdd04f9dd79205b51468dbac {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.chimeric.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.chimeric.gdc_realn.bam 28767632 BAM chimeric harmonized CPTAC3 552566d9-44ec-4bcb-98f6-b8a6a1da22fd 25b9fdb5c3bc5fe53fe682dc264cb463 {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.chimeric.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.chimeric.gdc_realn.bam 139549793 BAM chimeric harmonized CPTAC3 707108e4-5f9a-456d-b3db-df64e863c6c4 466320a184cb0a4bbfe8e8952cde8f1f {"aliquot_tag": "ALQ_e8baf41f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.genomic.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.genomic.gdc_realn.bam 8893378244 BAM genomic harmonized CPTAC3 43bda321-b87d-4c61-8410-16f3632842c4 f381bdca52c057377fd34794f0771500 {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.genomic.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.genomic.gdc_realn.bam 6495962704 BAM genomic harmonized CPTAC3 465589e6-4bbe-40fe-ba94-7a04d63354e3 bc2a0a6d5d4b0b0d64d8d31b86e67d69 {"aliquot_tag": "ALQ_e8baf41f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.S22_L006_R1.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4308786861 FASTQ S22_L006_R1 unaligned CPTAC3 2ef7f6a7-6298-4cd2-a38b-9b810905ab57 5179bb1dd99d937435b46a2854c0b82a {"aliquot_tag": "ALQ_77df146f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.S22_L006_R2.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4625219569 FASTQ S22_L006_R2 unaligned CPTAC3 7056adfe-ff91-4228-91b4-9954ba0148dd 09e4b09c6e0a73586b432bde5addca07 {"aliquot_tag": "ALQ_77df146f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.S83_R1.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R1_001.fastq.gz 3385320872 FASTQ S83_R1 unaligned CPTAC3 f1ae59e2-f920-46aa-a78a-c3a726995937 6d9e3c24dec1128565def27208f53802 {"aliquot_tag": "ALQ_e8baf41f", "sample": "S83", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.S83_R2.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R2_001.fastq.gz 3495649700 FASTQ S83_R2 unaligned CPTAC3 de78178b-7053-420d-a2a5-b20065363be4 4e7ef53f82d27b4f474dce5143bd7c67 {"aliquot_tag": "ALQ_e8baf41f", "sample": "S83", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.transcriptome.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.transcriptome.gdc_realn.bam 11369339348 BAM transcriptome harmonized CPTAC3 fff6a6ec-a254-4703-8405-49b725b4cd9f b060095e9a102e14bcee582002df0bfc {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.RNA-Seq.transcriptome.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.transcriptome.gdc_realn.bam 2820957856 BAM transcriptome harmonized CPTAC3 5362883c-7255-4f85-8a87-e98071ee09c8 e1b8a3a4055b4946184d75007d9d2a97 {"aliquot_tag": "ALQ_e8baf41f", "gdc_sample_type": "Primary Tumor"} -C3L-00605.WGS.N C3L-00605 UCEC WGS blood_normal CPT0065340002 CPT0065340002.WholeGenome.RP-1303.bam 103126627116 BAM aligned CPTAC3 e60ba070-a4f5-4479-9eda-e259a62aa017 020fa3852fa060d397eaa67d1713c6ed {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00605.WGS.N.hg38 C3L-00605 UCEC WGS blood_normal CPT0065340002 9c7363c2-750a-408e-aa11-1bfaae41e7d0_gdc_realn.bam 160012713673 BAM harmonized CPTAC3 8f0c137b-dc5d-43c6-81e8-d728d8a1c5a8 a81cf67291109449a59197c14f7c79e0 {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00605.WGS.T C3L-00605 UCEC WGS tumor CPT0063890006 CPT0063890006.WholeGenome.RP-1303.bam 98055462108 BAM aligned CPTAC3 9c1798df-913b-40e8-aebd-f7864f01e283 4e75d2eefc503aa204a9f56682c1629e {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor"} -C3L-00605.WGS.T.hg38 C3L-00605 UCEC WGS tumor CPT0063890006 d9a888d9-211a-4a13-bbed-23dba208a9d2_gdc_realn.bam 152827782905 BAM harmonized CPTAC3 e8fc5d11-248f-4095-b9bd-e4f2c732e6fb 482536dc3574f0d8c3a97462d34c73a6 {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor"} -C3L-00605.WXS.N C3L-00605 UCEC WXS blood_normal CPT0065340002 CPT0065340002.WholeExome.RP-1303.bam 33043516916 BAM aligned CPTAC3 4988c33a-7ed3-499b-afa3-6f8c35e176a6 a43b5e81ba8b86f3877c0a6ddddd70b1 {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00605.WXS.N.hg38 C3L-00605 UCEC WXS blood_normal CPT0065340002 9c7363c2-750a-408e-aa11-1bfaae41e7d0_gdc_realn.bam 44867241203 BAM harmonized CPTAC3 54a0c2d4-cbb6-41f9-bfaa-e8c58c7f5362 54f9157d530564c4e68cb53594ddaab0 {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal"} -C3L-00605.WXS.T C3L-00605 UCEC WXS tumor CPT0063890006 CPT0063890006.WholeExome.RP-1303.bam 30992348867 BAM aligned CPTAC3 ac1f750a-fa75-4c5a-96f7-4c56d795082f a5857d72f19e72d564ffb821ac21c47f {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor"} -C3L-00605.WXS.T.hg38 C3L-00605 UCEC WXS tumor CPT0063890006 d9a888d9-211a-4a13-bbed-23dba208a9d2_gdc_realn.bam 42595336721 BAM harmonized CPTAC3 d3e79d6a-2baf-4059-9ecb-ec1073619f26 803898b2b0a345749b951be56191791e {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_13415cf8.miRNA-Seq.S35_L003_R1.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079280006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L003_R1_001.unaln.bam 244651016 BAM S35_L003_R1 unaligned CPTAC3 ed840d13-64bd-4ed5-8416-ec7c2579bbc5 641987ac305b47bc20d878b067392faf {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_13415cf8.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079280006 a770c4ec-a4fe-4278-9784-c9269ddab9b7_mirnaseq_gdc_realn.bam 272216507 BAM harmonized CPTAC3 3c8bb34a-9486-4808-a4e0-75193ace261c 283841a6092b5624a4b3baff76578469 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_13415cf8.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.chimeric.gdc_realn.bam 137124607 BAM chimeric harmonized CPTAC3 9a8ce6f4-87ff-4803-a1f1-ae454e88c79b 8ab6e16439111d3c888b27192795ef83 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_13415cf8.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.genomic.gdc_realn.bam 7649688030 BAM genomic harmonized CPTAC3 01c7609e-633d-4571-aa01-b42a00d0a353 8d343860277c085d363c0935d1347a65 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_13415cf8.RNA-Seq.S2_L001_R1.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R1_001.fastq.gz 3161018660 FASTQ S2_L001_R1 unaligned CPTAC3 09b97952-9927-4705-95f5-70dfc575427e b6756fa2265714870d117101977cc225 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_13415cf8.RNA-Seq.S2_L001_R2.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R2_001.fastq.gz 3815255893 FASTQ S2_L001_R2 unaligned CPTAC3 a024c126-7dca-4417-9a95-60649b9384b2 8eae2d6d3447fe57d3ff36b990cde612 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_13415cf8.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.transcriptome.gdc_realn.bam 9545346936 BAM transcriptome harmonized CPTAC3 66d7a9f5-3565-4f42-aa56-66a6336b6707 31356088d6af74a92e190b49193bd340 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_2e217548.miRNA-Seq.S36_L003_R1.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079290006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L003_R1_001.unaln.bam 258462014 BAM S36_L003_R1 unaligned CPTAC3 14369cde-31ea-471c-b2cf-cac30a449f59 2b209e704d465ba453fe54a51123ae3f {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_2e217548.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079290006 e373db0f-f8a1-47a2-8a0e-ad812fac0621_mirnaseq_gdc_realn.bam 288617248 BAM harmonized CPTAC3 f7affb97-b962-4a5b-9617-200af34c07ff 33ae974b4288627d74db3d006e938a6e {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_2e217548.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.chimeric.gdc_realn.bam 93673355 BAM chimeric harmonized CPTAC3 c2770117-e211-4f05-8b38-5e6a796ce1f0 694aee2e5f5ce62a9da10424f9468bd4 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_2e217548.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.genomic.gdc_realn.bam 10760326638 BAM genomic harmonized CPTAC3 d501a752-470f-40ea-8063-97846aa49f14 03be0fc0115670d09f472d2ae62d4f29 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_2e217548.RNA-Seq.S3_L001_R1.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4766794011 FASTQ S3_L001_R1 unaligned CPTAC3 35a41cff-30e6-444b-8e79-5ed6bcd0c649 713a5e045db17aff3327a2380796e673 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_2e217548.RNA-Seq.S3_L001_R2.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 5664402490 FASTQ S3_L001_R2 unaligned CPTAC3 5f052edd-5f06-49f4-b792-f02153f1f13a 429523355c4f63e0f856bac11b41ad7e {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_2e217548.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.transcriptome.gdc_realn.bam 13976095062 BAM transcriptome harmonized CPTAC3 ab37dafb-9237-4130-b7a9-2a39a57f9ed1 1d360e4b4505e3a67b20a1b4606106c2 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_83fe4169.MethArray.Green.T C3L-00606 CCRCC Methylation_Array tumor CPT0079280009 204372030161_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 55abf0fc-a0a8-421e-b091-7547b1e9148e 034f38e559527475976685a2fef4ecf0 {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_83fe4169.MethArray.Red.T C3L-00606 CCRCC Methylation_Array tumor CPT0079280009 204372030161_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 d13a71a2-7aab-4182-9325-209cc33aea89 e519daa975a4ca095480e04b229d46df {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_83fe4169.WGS.T C3L-00606 CCRCC WGS tumor CPT0079280009 CPT0079280009.WholeGenome.RP-2158.bam 22856853246 BAM aligned CPTAC3 dfebdd7e-fd5d-4898-b82b-c3ae7eb5fa9f acc3ac455ebdd0a32db1950c554ae7db {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_83fe4169.WGS.T.hg38 C3L-00606 CCRCC WGS tumor CPT0079280009 d9ec0e40-42e1-48d3-a525-cf03f9c4aab8_wgs_gdc_realn.bam 68658339364 BAM harmonized CPTAC3 f14067f2-5f19-4893-a139-91d0e5c10548 6b06d77e84a18c5f5f8514142a1a911a {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_83fe4169.WXS.T C3L-00606 CCRCC WXS tumor CPT0079280009 CPT0079280009.WholeExome.RP-1303.bam 18200718527 BAM aligned CPTAC3 013942d6-758d-4b72-be74-b75db3e0078d 72f0169faf53b38616dc012529b2809d {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_83fe4169.WXS.T.hg38 C3L-00606 CCRCC WXS tumor CPT0079280009 d9ec0e40-42e1-48d3-a525-cf03f9c4aab8_wxs_gdc_realn.bam 25779851202 BAM harmonized CPTAC3 1e1b67d0-8998-4ee0-b971-15562e7d369e 74bec64e6decefbf1e60ea69203962b8 {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_be9e68d9.MethArray.Green.T C3L-00606 CCRCC Methylation_Array tumor CPT0079290009 204372030072_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e4d82f96-e089-4441-902c-cd182bf86f19 65e3e88a3a49d07043960a34afe1f4c6 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_be9e68d9.MethArray.Red.T C3L-00606 CCRCC Methylation_Array tumor CPT0079290009 204372030072_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 7a425473-3d0f-48df-a02f-4d0a8aea3aa1 dbe5c40e68b317edccbad92932f4036e {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_be9e68d9.WGS.T C3L-00606 CCRCC WGS tumor CPT0079290009 CPT0079290009.WholeGenome.RP-2158.bam 27316669249 BAM aligned CPTAC3 34693593-c490-431a-b8fa-9b797c71a48c 725e176214c1c78aa3b7bfc5fc90739e {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_be9e68d9.WGS.T.hg38 C3L-00606 CCRCC WGS tumor CPT0079290009 430ef314-65b1-465f-acbc-7e4460ed7f69_wgs_gdc_realn.bam 83198351556 BAM harmonized CPTAC3 b4b2a6cb-06fc-41be-8b53-aa8dfdfee364 d17b559770a0f59bbdf871c2614f2547 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_be9e68d9.WXS.T C3L-00606 CCRCC WXS tumor CPT0079290009 CPT0079290009.WholeExome.RP-1303.bam 17343605850 BAM aligned CPTAC3 cf6ce7ca-45ef-41f2-aec1-d67c9ca16460 70798709fb700dbc1eccc14a2df3bea2 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.DUP_be9e68d9.WXS.T.hg38 C3L-00606 CCRCC WXS tumor CPT0079290009 430ef314-65b1-465f-acbc-7e4460ed7f69_wxs_gdc_realn.bam 24048610611 BAM harmonized CPTAC3 2a2be233-043a-440b-99a5-4c5db94fd595 eebe2d5096963e2140990532f7c313a1 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00606.MethArray.Green.A C3L-00606 CCRCC Methylation_Array tissue_normal CPT0079300009 204930630040_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8eeafc77-715e-443c-a72c-8210cd7c92d9 afe75d05504432f98b754c6336489ec4 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.MethArray.Green.T C3L-00606 CCRCC Methylation_Array tumor CPT0079270009 202184990008_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 944d78ee-cb1c-4522-bab7-bdeba711649d a8cd4aa5be536fbdac34e3900d4f105a {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor"} -C3L-00606.MethArray.Red.A C3L-00606 CCRCC Methylation_Array tissue_normal CPT0079300009 204930630040_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 4e485a24-06f6-40e6-9fda-87e7336e0b2c 55eb5261bf4b9f71f9c0914b1ecc4f1e {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.MethArray.Red.T C3L-00606 CCRCC Methylation_Array tumor CPT0079270009 202184990008_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 a8be6067-ae24-495f-845e-c6e4d460afee f43b7965d77af67a447099d47bd85e12 {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor"} -C3L-00606.miRNA-Seq.A.hg38 C3L-00606 CCRCC miRNA-Seq tissue_normal CPT0079300006 77eb0557-89d0-448e-a0c6-a5e06c4575fe_mirnaseq_gdc_realn.bam 274684689 BAM harmonized CPTAC3 97d37385-c3fb-4568-b1b4-4483f1763fda 28a25dc01a32fc8a51e681c8aeddf9a2 {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.miRNA-Seq.S25_L007_R1.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079270006 181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L007_R1_001.unaln.bam 186801172 BAM S25_L007_R1 unaligned CPTAC3 5578cd29-c004-4a34-80d9-262c11eb3da3 256678e105a67f968539fdfe5bafa6a8 {"aliquot_tag": "ALQ_9111cb29", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.miRNA-Seq.S46_L004_R1.A C3L-00606 CCRCC miRNA-Seq tissue_normal CPT0079300006 181108_UNC31-K00269_0163_BH23TVBBXY_TCCCGA_S46_L004_R1_001.unaln.bam 245669922 BAM S46_L004_R1 unaligned CPTAC3 e2795bea-2f23-4bc3-86fc-4d667b1ebd0e 41243fdf1b4770eeba6cbeff83e86c78 {"aliquot_tag": "ALQ_e86dc49c", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079270006 d98c99f4-a0f7-45f6-9560-1d53ebe7ad3b_mirnaseq_gdc_realn.bam 209496188 BAM harmonized CPTAC3 d3e05074-b433-46e2-86d1-db0909c30852 75ad4abdc275b8d58d8c32b6d825dc2a {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor"} -C3L-00606.RNA-Seq.chimeric.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.chimeric.gdc_realn.bam 80680422 BAM chimeric harmonized CPTAC3 616007a7-db93-4b39-90db-2ca841917eac 7d67b3739a1d5a0f056f566b4571b85e {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.chimeric.gdc_realn.bam 213153686 BAM chimeric harmonized CPTAC3 ac33693a-b0cb-443e-a715-dea9cba11e5b 99535a43b88750c8be149d975d931ec6 {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor"} -C3L-00606.RNA-Seq.genomic.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.genomic.gdc_realn.bam 8732457205 BAM genomic harmonized CPTAC3 c3d45eb9-892d-43b7-8c30-180c79c76d84 b5203beb962c504a4d72cd9a7fd07504 {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.genomic.gdc_realn.bam 8206599368 BAM genomic harmonized CPTAC3 58a55672-a230-4a86-a79f-f990131d3457 51952f991dc1e6297b51e2abb14f1d62 {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor"} -C3L-00606.RNA-Seq.S14_L004_R1.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4073068847 FASTQ S14_L004_R1 unaligned CPTAC3 c609497c-f015-409f-9cf7-3b466a1dd9e4 eddc2c5c057c54b5b21cc51105b88b7c {"aliquot_tag": "ALQ_9111cb29", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.RNA-Seq.S14_L004_R2.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4450605623 FASTQ S14_L004_R2 unaligned CPTAC3 0f88b422-2196-4cc5-a77b-f48806ec407f 1923295b2cc2351e568326d497406712 {"aliquot_tag": "ALQ_9111cb29", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00606.RNA-Seq.S7_L008_R1.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R1_001.fastq.gz 4236947704 FASTQ S7_L008_R1 unaligned CPTAC3 17763b60-3901-4f7f-8074-d075ec244076 702ea37e9267d8eb6e1ff246694978f8 {"aliquot_tag": "ALQ_e86dc49c", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.RNA-Seq.S7_L008_R2.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R2_001.fastq.gz 4683728721 FASTQ S7_L008_R2 unaligned CPTAC3 e298efe4-16f4-46ec-af52-d098a306ee1d 45dff2f22f0c58a6acd3c30d959b4ba9 {"aliquot_tag": "ALQ_e86dc49c", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.RNA-Seq.transcriptome.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.transcriptome.gdc_realn.bam 10708518017 BAM transcriptome harmonized CPTAC3 e20fe32a-3eba-41cd-a315-6f970d4347e2 19e4a435291acc76b03aeb7954dc7441 {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.transcriptome.gdc_realn.bam 12563184875 BAM transcriptome harmonized CPTAC3 ef24f8c1-661a-4dee-af08-b8eeb4f41fd2 1d6fb2a726b17a5f6678b4b360e446a7 {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor"} -C3L-00606.scRNA-Seq.S1_L001_R1.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R1_001.fastq.gz 5909535316 FASTQ S1_L001_R1 unaligned CPTAC3 35f5df89-97ce-42bb-b877-b5895897264c e0e04b5a75fa7ac55f4cbe5958707e76 {"aliquot_tag": "ALQ_f8600ee7", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.scRNA-Seq.S1_L001_R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R2_001.fastq.gz 20536180766 FASTQ S1_L001_R2 unaligned CPTAC3 de34e27a-d64a-41a1-a883-d9ef33055b9f e668e6fa36aa61fd8dc615a657a642d0 {"aliquot_tag": "ALQ_f8600ee7", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00606.scRNA-Seq.S1_L003_R1.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R1_001.fastq.gz 7006974487 FASTQ S1_L003_R1 unaligned CPTAC3 8e887aa1-f154-4df2-857c-3bdca0b7c9c6 6570d8dc19731d2c838493b57941e119 {"aliquot_tag": "ALQ_4750b086", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.scRNA-Seq.S1_L003_R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R2_001.fastq.gz 25485703292 FASTQ S1_L003_R2 unaligned CPTAC3 423b2131-85be-4a3e-a8e3-7fd0a153c2db 9cc7e14fd80755b6c860e0e831b0a64f {"aliquot_tag": "ALQ_4750b086", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00606.scRNA-Seq.S1_L004_R1.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R1_001.fastq.gz 9757383027 FASTQ S1_L004_R1 unaligned CPTAC3 28c6d96c-f9f7-4ceb-939d-fcd71cb40b97 994d4fef04770427c28ee90c5bd09903 {"aliquot_tag": "ALQ_7a309936", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00606.scRNA-Seq.S1_L004_R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R2_001.fastq.gz 21071134741 FASTQ S1_L004_R2 unaligned CPTAC3 0601ec15-081d-418f-a6dd-510ed23c5337 0abc388faaf4746c1f3f363bf2a6cf67 {"aliquot_tag": "ALQ_7a309936", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00606.WGS.A C3L-00606 CCRCC WGS tissue_normal CPT0079300009 CPT0079300009.WholeGenome.RP-1303.bam 64686378157 BAM aligned CPTAC3 33590b57-3b79-4b8c-8774-5d2b1f0f0aec 7e7ced207601d653d781a16875370022 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.WGS.A.hg38 C3L-00606 CCRCC WGS tissue_normal CPT0079300009 e037f72e-e7a4-424c-b007-234c10e41d24_wgs_gdc_realn.bam 95254866972 BAM harmonized CPTAC3 352f0caa-a6cf-49be-8476-de93adaa9b94 5a864ef7d922fdfceff3da1f1d776d52 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.WGS.N C3L-00606 CCRCC WGS blood_normal CPT0080110002 CPT0080110002.WholeGenome.RP-1303.bam 62412835946 BAM aligned CPTAC3 66aa336c-f58c-4f03-a35f-93ade7810bda 820acfa47dc66cba54ea9db6a2fbc832 {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal"} -C3L-00606.WGS.N.hg38 C3L-00606 CCRCC WGS blood_normal CPT0080110002 b8fe112b-ae62-4c1f-8856-7599e851035c_gdc_realn.bam 92655478936 BAM harmonized CPTAC3 e8447ffd-deea-4bd1-be61-b76a467be683 7694314fa3d44a8fac1ce813b403d64b {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal"} -C3L-00606.WGS.T C3L-00606 CCRCC WGS tumor CPT0079270009 CPT0079270009.WholeGenome.RP-1303.bam 55148915318 BAM aligned CPTAC3 63bd5959-4380-4778-bafb-eacb1d33ba8d 26620a2577b3951165a48e7676cc77f1 {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor"} -C3L-00606.WGS.T.hg38 C3L-00606 CCRCC WGS tumor CPT0079270009 c873d23c-79cd-44f8-bfe1-1991e24a6f7d_gdc_realn.bam 81909662524 BAM harmonized CPTAC3 14bff2fb-447b-4af1-92b3-a23295dc64e0 85c0a9fc3c9604143d5d6832bbe8dcff {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor"} -C3L-00606.WXS.A C3L-00606 CCRCC WXS tissue_normal CPT0079300009 CPT0079300009.WholeExome.RP-1303.bam 40323998717 BAM aligned CPTAC3 adaabf36-6a44-4f41-a77f-cc65af098d64 8d4aee670c94e4273fd825db1f8f3998 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.WXS.A.hg38 C3L-00606 CCRCC WXS tissue_normal CPT0079300009 e037f72e-e7a4-424c-b007-234c10e41d24_wxs_gdc_realn.bam 54790485900 BAM harmonized CPTAC3 60040b86-fbf5-417b-94c0-c28fa846ad71 116eeaa4f852a16c4af336014a1cf419 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00606.WXS.N C3L-00606 CCRCC WXS blood_normal CPT0080110002 CPT0080110002.WholeExome.RP-1303.bam 22403374998 BAM aligned CPTAC3 f55b6f7a-e090-4784-a875-8f07dc6877ed db29df9155eb841ceb46d4f8278709ca {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal"} -C3L-00606.WXS.N.hg38 C3L-00606 CCRCC WXS blood_normal CPT0080110002 b8fe112b-ae62-4c1f-8856-7599e851035c_gdc_realn.bam 30061559684 BAM harmonized CPTAC3 e6c6780a-4cc7-432e-8431-5b59a15d11c6 d31757394104b36d985330030dffe089 {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal"} -C3L-00606.WXS.T C3L-00606 CCRCC WXS tumor CPT0079270009 CPT0079270009.WholeExome.RP-1303.bam 31587024929 BAM aligned CPTAC3 96a41058-8e54-4314-b1d1-72f3345bbf85 66a8167c24b878cb650309f4075445ab {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor"} -C3L-00606.WXS.T.hg38 C3L-00606 CCRCC WXS tumor CPT0079270009 c873d23c-79cd-44f8-bfe1-1991e24a6f7d_gdc_realn.bam 43524921618 BAM harmonized CPTAC3 08e74cee-0100-4130-8225-fd2b77b0e592 7f66a1f37f818061e7ebe553c6051e79 {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor"} -C3L-00607.MethArray.Green.A C3L-00607 CCRCC Methylation_Array tissue_normal CPT0025060009 204930640042_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 5711927d-256b-45c1-9389-e18dd0e0fb3b bde13bf9dcc157f21ff45667b3b19fd2 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.MethArray.Green.T C3L-00607 CCRCC Methylation_Array tumor CPT0025050009 202184990066_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cd8d2e9c-72fe-4001-99cb-1a1fdc57be21 f0143197839bdb1f161b47b67c93afc2 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor"} -C3L-00607.MethArray.Red.A C3L-00607 CCRCC Methylation_Array tissue_normal CPT0025060009 204930640042_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 10a6edee-e18b-4438-819e-8a91175bf28b 96f77735e75ad10dd6b83b04e37ba8bd {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.MethArray.Red.T C3L-00607 CCRCC Methylation_Array tumor CPT0025050009 202184990066_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 aa4503cd-1152-4820-b650-ab6191a56189 6d03c191db5ac79ff340dc5c754ccaa8 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor"} -C3L-00607.miRNA-Seq.A.hg38 C3L-00607 CCRCC miRNA-Seq tissue_normal CPT0025060006 ec49624e-ecaa-4cd6-9102-569c040e83c4_mirnaseq_gdc_realn.bam 179102975 BAM harmonized CPTAC3 99c05698-9681-4188-960e-66c304a46d0e 12ed361ad3f639a2f507d32acc2e554d {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.miRNA-Seq.S2_L001_R1.T C3L-00607 CCRCC miRNA-Seq tumor CPT0025050006 180924_UNC31-K00269_0154_AHWTMLBBXX_TTAGGC_S2_L001_R1_001.unaln.bam 159975026 BAM S2_L001_R1 unaligned CPTAC3 e7a932aa-0940-4b1c-8764-1495f30c3e66 8f4646d281d67b3e812070f7d8ce5a39 {"aliquot_tag": "ALQ_29595d52", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00607.miRNA-Seq.S8_L003_R1.A C3L-00607 CCRCC miRNA-Seq tissue_normal CPT0025060006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L003_R1_001.unaln.bam 160618685 BAM S8_L003_R1 unaligned CPTAC3 1c18822f-b0a1-42c8-af71-a4050a19545b e9e162095a8f32ba5c088f27fe993465 {"aliquot_tag": "ALQ_6ef92782", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.miRNA-Seq.T.hg38 C3L-00607 CCRCC miRNA-Seq tumor CPT0025050006 a00a647a-d53e-463a-8ea2-a2e2bb529866_mirnaseq_gdc_realn.bam 173595676 BAM harmonized CPTAC3 757ebf79-90fe-412c-8400-d0a00eb953e4 ff3c945a07a3e333de339bcfb0282d0e {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor"} -C3L-00607.RNA-Seq.chimeric.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.chimeric.gdc_realn.bam 32728424 BAM chimeric harmonized CPTAC3 d2541e8d-73c0-4f1b-b1ee-ba3ce58a6ca7 62a54aa9655bbd6013f153b1725d597b {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.RNA-Seq.chimeric.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.chimeric.gdc_realn.bam 64712169 BAM chimeric harmonized CPTAC3 b6043c1c-01ec-49e0-9ff5-efabd488dc39 c7eb6d34cca227f0ecc9be1fa362222e {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor"} -C3L-00607.RNA-Seq.genomic.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.genomic.gdc_realn.bam 7429344445 BAM genomic harmonized CPTAC3 d80a6bb0-dece-4eed-ba33-183cb0715938 009acd5ca8bca2844aa7c1cc22c47522 {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.RNA-Seq.genomic.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.genomic.gdc_realn.bam 7228486066 BAM genomic harmonized CPTAC3 186f46c2-77a3-4327-a4f3-27f42df0ca33 a4fbd701bc51fe1f565e2a0cd8a8d925 {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor"} -C3L-00607.RNA-Seq.S18_L005_R1.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R1_001.fastq.gz 3654075527 FASTQ S18_L005_R1 unaligned CPTAC3 9d6e4b39-0d25-48da-bffe-f3df9ba5c2ee 8c620947f2147e50cd4eca7a44fe294e {"aliquot_tag": "ALQ_6ef92782", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.RNA-Seq.S18_L005_R2.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R2_001.fastq.gz 4031773432 FASTQ S18_L005_R2 unaligned CPTAC3 4779af1c-584c-481b-90a0-b28c94879c8d 43cb877296159079221dec6d1917dca2 {"aliquot_tag": "ALQ_6ef92782", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.RNA-Seq.S2_L001_R1.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R1_001.fastq.gz 3565751071 FASTQ S2_L001_R1 unaligned CPTAC3 1029d950-d46f-4ee3-adc7-fcedfaaa9934 5e87225e4eed403e981a7353bb7817d2 {"aliquot_tag": "ALQ_29595d52", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00607.RNA-Seq.S2_L001_R2.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R2_001.fastq.gz 3902396964 FASTQ S2_L001_R2 unaligned CPTAC3 971e3386-6c90-4819-9eda-78abf0bd8792 678d02298f5419eabdef034520a146f4 {"aliquot_tag": "ALQ_29595d52", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00607.RNA-Seq.transcriptome.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.transcriptome.gdc_realn.bam 9296205585 BAM transcriptome harmonized CPTAC3 42f89af5-081f-4b1f-aab6-7a27bfd8a7e4 06b0446c565b2daf1d44c11927824d12 {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.RNA-Seq.transcriptome.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.transcriptome.gdc_realn.bam 9809788419 BAM transcriptome harmonized CPTAC3 e4fb7776-1eb4-4224-afa8-1f1b99cbfbbd 4a3bfb02baabb672de934d93cf25de28 {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor"} -C3L-00607.WGS.A C3L-00607 CCRCC WGS tissue_normal CPT0025060009 CPT0025060009.WholeGenome.RP-1303.bam 60196224520 BAM aligned CPTAC3 ecbe26b8-e7db-43d2-bed3-e26fb65e0076 74c3173267f678a5f911dac8c63b7525 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.WGS.A.hg38 C3L-00607 CCRCC WGS tissue_normal CPT0025060009 946e20ea-7481-4aac-82f9-f4543083c284_wgs_gdc_realn.bam 87648399573 BAM harmonized CPTAC3 66304449-54ff-41a8-beff-2344d7956633 d36488d9b08fb5771479de62a76326fb {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.WGS.N C3L-00607 CCRCC WGS blood_normal CPT0029400002 CPT0029400002.WholeGenome.RP-1303.bam 55927105562 BAM aligned CPTAC3 e067c687-9855-4636-be48-0ca284a3fcee 0e8fef626403708aa124e33477b9c0c7 {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal"} -C3L-00607.WGS.N.hg38 C3L-00607 CCRCC WGS blood_normal CPT0029400002 13646ce6-d98b-4bb0-a5d8-4cd94406b688_gdc_realn.bam 80783683828 BAM harmonized CPTAC3 7593f7a3-e21c-4554-96cd-f10317c70c88 c8953fd187cc6b544d2d425bb312e77e {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal"} -C3L-00607.WGS.T C3L-00607 CCRCC WGS tumor CPT0025050009 CPT0025050009.WholeGenome.RP-1303.bam 60273775409 BAM aligned CPTAC3 092f044b-63b0-472a-95db-e7769dcc6b9c e0312022fa6575051b7b60295ae817c4 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor"} -C3L-00607.WGS.T.hg38 C3L-00607 CCRCC WGS tumor CPT0025050009 db516445-d4aa-4224-b80d-45896c0821ae_gdc_realn.bam 87815377665 BAM harmonized CPTAC3 67d4bd2c-9943-4a63-9166-067fb93babb2 0b9155ea8627c3bb75a3ca8de29ee464 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor"} -C3L-00607.WXS.A C3L-00607 CCRCC WXS tissue_normal CPT0025060009 CPT0025060009.WholeExome.RP-1303.bam 38378163241 BAM aligned CPTAC3 929e1fe1-ce4e-467f-8a20-cb91c6454d15 ea641765fa311935dd60ba06b16488e2 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.WXS.A.hg38 C3L-00607 CCRCC WXS tissue_normal CPT0025060009 946e20ea-7481-4aac-82f9-f4543083c284_wxs_gdc_realn.bam 51528018532 BAM harmonized CPTAC3 909b9c34-5d4a-40c6-b656-d8ba799edfd3 7a6f46acba61382dde49eb369fb0f324 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00607.WXS.N C3L-00607 CCRCC WXS blood_normal CPT0029400002 CPT0029400002.WholeExome.RP-1303.bam 26190654241 BAM aligned CPTAC3 b1ba27cc-0929-4ddb-ab84-386c9c343dcf 31e4b8b41f142cb76fadd42bcd1e9b08 {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal"} -C3L-00607.WXS.N.hg38 C3L-00607 CCRCC WXS blood_normal CPT0029400002 13646ce6-d98b-4bb0-a5d8-4cd94406b688_gdc_realn.bam 35547680283 BAM harmonized CPTAC3 a9d8ee54-11e2-4725-876d-64a004b8dd78 6761fd732dd21bb53eadb5ebe44a533f {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal"} -C3L-00607.WXS.T C3L-00607 CCRCC WXS tumor CPT0025050009 CPT0025050009.WholeExome.RP-1303.bam 24602618854 BAM aligned CPTAC3 9c6e1ade-1a72-46c2-98a1-af8d61790952 11fceed4648edb93e11e740f2ab44f93 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor"} -C3L-00607.WXS.T.hg38 C3L-00607 CCRCC WXS tumor CPT0025050009 db516445-d4aa-4224-b80d-45896c0821ae_gdc_realn.bam 33650890376 BAM harmonized CPTAC3 98e189cf-1d64-47af-a377-bf3dbfb7779f d8dc891218a56bd28085d86cae6dc958 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor"} -C3L-00608.MethArray.Green.T C3L-00608 CCRCC Methylation_Array tumor CPT0390480006 205549610123_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 aecaa4be-99d8-4b30-bc9e-b6ac6b967aca 1c5523b5f3f73026a19aadc77d9f79c9 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor"} -C3L-00608.MethArray.Red.T C3L-00608 CCRCC Methylation_Array tumor CPT0390480006 205549610123_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 7c20a1e5-ca93-488d-ad31-bc922a0ba436 84abe10501d8f84d9df57fc87e3935f6 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor"} -C3L-00608.miRNA-Seq.S35_L002_R1.T C3L-00608 CCRCC miRNA-Seq tumor CPT0390480009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCATTC_S35_L002_R1_001.unaln.bam 296089951 BAM S35_L002_R1 unaligned CPTAC3 d25b1aad-c220-44e8-b8a4-8c77b7f14b70 5b8aa93ae0455ad6fcc1b890d2be6318 {"aliquot_tag": "ALQ_ec38c950", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00608.miRNA-Seq.T.hg38 C3L-00608 CCRCC miRNA-Seq tumor CPT0390480009 a5bef58a-6114-4f0d-a71a-0e62b6178dc9_mirnaseq_gdc_realn.bam 313775746 BAM harmonized CPTAC3 48cebf52-ad49-4413-8d5e-b306a03db662 3af76ec5f4cdc6ddd7236740b7953f64 {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor"} -C3L-00608.RNA-Seq.chimeric.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.chimeric.gdc_realn.bam 368342961 BAM chimeric harmonized CPTAC3 96c68208-626b-43f9-9c24-5c32a8c52813 b8afe0a99eefbaf9e2d72aa4411aefb8 {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor"} -C3L-00608.RNA-Seq.genomic.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.genomic.gdc_realn.bam 8407644954 BAM genomic harmonized CPTAC3 67c9747a-81cd-402e-949a-fa6a20a1aa77 3587ee382f5b36add7a782d1b19c8d3a {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor"} -C3L-00608.RNA-Seq.S19_L006_R1.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R1_001.fastq.gz 3965218141 FASTQ S19_L006_R1 unaligned CPTAC3 fdcd0f9b-f5b3-48b2-9237-c3bf94ad1dc7 afbb9fe697f6e9681e4c193b91b135d0 {"aliquot_tag": "ALQ_ec38c950", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00608.RNA-Seq.S19_L006_R2.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R2_001.fastq.gz 4487009468 FASTQ S19_L006_R2 unaligned CPTAC3 8ff2ace2-2f50-4d0d-a54e-adf709e8c2b1 09cd5aea9268bcd1f91856f302e2f25f {"aliquot_tag": "ALQ_ec38c950", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00608.RNA-Seq.transcriptome.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.transcriptome.gdc_realn.bam 9687433773 BAM transcriptome harmonized CPTAC3 34162df4-7490-4af1-8dff-ba2f42a6b067 23b4e5b68894649e72793a9498cc0c50 {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor"} -C3L-00608.WGS.N C3L-00608 CCRCC WGS blood_normal CPT0390540002 CPT0390540002.WholeGenome.RP-2158.bam 22546245686 BAM aligned CPTAC3 d2e5b96d-d209-4a5f-9dfe-87bd9e63b3b4 e7f83cb4c3f31732961461507cb92fd4 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00608.WGS.N.hg38 C3L-00608 CCRCC WGS blood_normal CPT0390540002 8b563fdb-c01d-42e1-85c6-1e182545288b_wgs_gdc_realn.bam 70509286066 BAM harmonized CPTAC3 2b26c5d3-d8f9-47bf-8110-b7d21e25b580 7489e9fca5b258c44c69802e2b05b177 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00608.WGS.T C3L-00608 CCRCC WGS tumor CPT0390480006 CPT0390480006.WholeGenome.RP-2158.bam 21625592296 BAM aligned CPTAC3 46dbc208-0865-4f44-ad9c-5b89f0d0bbf5 a429100567b01415205e9749d2e39f73 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor"} -C3L-00608.WGS.T.hg38 C3L-00608 CCRCC WGS tumor CPT0390480006 e984c099-8c3b-4306-9fe6-14d31ad40b0c_wgs_gdc_realn.bam 65410149334 BAM harmonized CPTAC3 80597859-3d5a-4c58-82d5-0073c1fec878 946b04db5a926af8ba836bc3fc3993c5 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor"} -C3L-00608.WXS.N C3L-00608 CCRCC WXS blood_normal CPT0390540002 CPT0390540002.WholeExome.RP-1303.bam 16934604316 BAM aligned CPTAC3 d8e0dffa-269b-4f47-8136-a518a4194db7 c85297ee618821f4fcb3f34f03634b63 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00608.WXS.N.hg38 C3L-00608 CCRCC WXS blood_normal CPT0390540002 8b563fdb-c01d-42e1-85c6-1e182545288b_wxs_gdc_realn.bam 23283787675 BAM harmonized CPTAC3 5921110d-309e-4bfa-81de-fbb2351e5973 bf20eaa36d4e3ec0b14d41c7f204c902 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-00608.WXS.T C3L-00608 CCRCC WXS tumor CPT0390480006 CPT0390480006.WholeExome.RP-1303.bam 24329294109 BAM aligned CPTAC3 25f8d8af-08f8-4f3e-83e6-f1ab82949676 128ea77ba5016515138fa9a55c972d5c {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor"} -C3L-00608.WXS.T.hg38 C3L-00608 CCRCC WXS tumor CPT0390480006 e984c099-8c3b-4306-9fe6-14d31ad40b0c_wxs_gdc_realn.bam 34214979863 BAM harmonized CPTAC3 43df9351-95d7-4e54-a648-1617c8bd78a0 f72d75361537d6f1212a93bc575fb271 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor"} -C3L-00610.MethArray.Green.T C3L-00610 CCRCC Methylation_Array tumor CPT0025110009 202184900148_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 54af3b45-1b64-499a-bf89-6b1941391856 951134a1d97c75bc1b24588fd272d414 {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor"} -C3L-00610.MethArray.Red.T C3L-00610 CCRCC Methylation_Array tumor CPT0025110009 202184900148_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 81ed544e-524f-4d24-adff-3c9c520d676d d5e93674ef4c14488b5f0cead7adf99e {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor"} -C3L-00610.miRNA-Seq.S20_L001_R1.T C3L-00610 CCRCC miRNA-Seq tumor CPT0025110006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAGATC_S20_L001_R1_001.unaln.bam 258818398 BAM S20_L001_R1 unaligned CPTAC3 33a94643-d0ae-44d5-ad58-6adceb3387a8 cfceab7a5f5c88db39c8dd744bedcefa {"aliquot_tag": "ALQ_17852837", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00610.miRNA-Seq.T.hg38 C3L-00610 CCRCC miRNA-Seq tumor CPT0025110006 a326b125-78d5-4634-bab5-2fe733b4d68e_mirnaseq_gdc_realn.bam 291852118 BAM harmonized CPTAC3 25af5d47-4d77-4855-b905-359d8aef121a d7854887d3f833ba3dbb48d2ffb2e4d2 {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor"} -C3L-00610.RNA-Seq.chimeric.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.chimeric.gdc_realn.bam 71756286 BAM chimeric harmonized CPTAC3 4f84d918-ca4c-42b0-a36d-bdabc399406b 3018fa680aff9805d7f721695966c42d {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor"} -C3L-00610.RNA-Seq.genomic.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.genomic.gdc_realn.bam 8475367775 BAM genomic harmonized CPTAC3 c63c95ea-90c1-4ac6-b67f-d1451302d010 167f9a3b5c126bcff3b67862a153234e {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor"} -C3L-00610.RNA-Seq.S10_L008_R1.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R1_001.fastq.gz 3968452040 FASTQ S10_L008_R1 unaligned CPTAC3 c0b30aa7-5d95-40a0-aea3-07e351caa9ec 8e66721b0056538073a37e704aaa00fb {"aliquot_tag": "ALQ_17852837", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00610.RNA-Seq.S10_L008_R2.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R2_001.fastq.gz 4244509339 FASTQ S10_L008_R2 unaligned CPTAC3 f82c169d-d8f8-4e98-8664-330850a873ce 2b4f0df69b7b2e3309b8d498db315bbc {"aliquot_tag": "ALQ_17852837", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00610.RNA-Seq.transcriptome.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.transcriptome.gdc_realn.bam 10933765625 BAM transcriptome harmonized CPTAC3 df377a95-b492-4da4-a0aa-67615b852ccf 1d84c5757e0142e51382fd5b675599b6 {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor"} -C3L-00610.WGS.N C3L-00610 CCRCC WGS blood_normal CPT0029410002 CPT0029410002.WholeGenome.RP-1303.bam 62433229820 BAM aligned CPTAC3 2641c950-f284-4ebb-8fd8-ee6812dbef19 f98f414e271fa393fc7b654bd9d7ca76 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00610.WGS.N.hg38 C3L-00610 CCRCC WGS blood_normal CPT0029410002 1306f9b0-9606-4058-8e52-3c55f55459fb_gdc_realn.bam 91350155166 BAM harmonized CPTAC3 cf1f561b-bcc6-4e40-b09b-d57b1b9b6c70 896f7e0553de406f4d837006d140b1a4 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00610.WGS.T C3L-00610 CCRCC WGS tumor CPT0025110009 CPT0025110009.WholeGenome.RP-1303.bam 65253453283 BAM aligned CPTAC3 f60d7606-0b11-49e8-97d9-16730a58fe67 978018f2e7897b2fc415f14fe6de3733 {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor"} -C3L-00610.WGS.T.hg38 C3L-00610 CCRCC WGS tumor CPT0025110009 017c4dbc-9f4e-4b39-a208-bf2b0f01e4e8_gdc_realn.bam 95136944720 BAM harmonized CPTAC3 ae06cc02-91b4-420a-b04f-1e76954d1de0 53b326831aedb4c646b029e37041d0af {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor"} -C3L-00610.WXS.N C3L-00610 CCRCC WXS blood_normal CPT0029410002 CPT0029410002.WholeExome.RP-1303.bam 25888873837 BAM aligned CPTAC3 69ab5280-c0b0-4471-96b4-cf691a894daf 40a750c760e3d7de22c582a094efcc33 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00610.WXS.N.hg38 C3L-00610 CCRCC WXS blood_normal CPT0029410002 1306f9b0-9606-4058-8e52-3c55f55459fb_gdc_realn.bam 35291193266 BAM harmonized CPTAC3 7d5b0498-e194-42ae-8401-0b33a3c095a1 68b14ec0c7bbaba509642f6f1e193ed5 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00610.WXS.T C3L-00610 CCRCC WXS tumor CPT0025110009 CPT0025110009.WholeExome.RP-1303.bam 20143103775 BAM aligned CPTAC3 f4948fcd-1013-40d1-a7b7-27a9aeb36d11 23bc6aa3cba10d29a223f777dc0d07fb {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor"} -C3L-00610.WXS.T.hg38 C3L-00610 CCRCC WXS tumor CPT0025110009 017c4dbc-9f4e-4b39-a208-bf2b0f01e4e8_gdc_realn.bam 27007249350 BAM harmonized CPTAC3 0dfd6c4e-b55b-4ac1-8139-8e6679e5d213 1c6b08d3fdd8bdb7a80a52d202ac57b3 {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor"} -C3L-00614.MethArray.Green.Tpb C3L-00614 AML Methylation_Array tumor_peripheral_blood CPT0100860002 203561620040_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d75d4ffc-354b-4454-8c4c-2fb42bf9ff89 5d55af85238f7c417bd200a3cdedff22 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.MethArray.Red.Tpb C3L-00614 AML Methylation_Array tumor_peripheral_blood CPT0100860002 203561620040_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 2254c51f-b519-43bb-9322-66eb77712179 1d68b6b921fe7575a6cfd3069c80a03b {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.miRNA-Seq.S19_L001_R1.Tpb C3L-00614 AML miRNA-Seq tumor_peripheral_blood CPT0100820002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 245076521 BAM S19_L001_R1 unaligned CPTAC3 4f344299-d412-49c0-af90-7d638f18ea03 cc5e3f404474e12da25b37c2fa39a574 {"aliquot_tag": "ALQ_7721fbaf", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.miRNA-Seq.Tpb.hg38 C3L-00614 AML miRNA-Seq tumor_peripheral_blood CPT0100820002 a5b9642f-7fb4-4c33-ae12-d762869424dd_mirnaseq_gdc_realn.bam 263823776 BAM harmonized CPTAC3 2bc8c941-d543-41f7-b470-3f9b3ef61bb2 2cbe9f9a7967b9f8b0332ccca2689187 {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.RNA-Seq.chimeric.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.chimeric.gdc_realn.bam 30522074 BAM chimeric harmonized CPTAC3 0fc68c4c-2a33-4196-9710-8956d5412518 0940c957a768e6d70bad140c06e49dab {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.RNA-Seq.genomic.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.genomic.gdc_realn.bam 8528536865 BAM genomic harmonized CPTAC3 94d79d00-012d-4628-a6c2-08efbacac471 6c43beed2c6efa960eabb72169e9ab00 {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.RNA-Seq.S38_L006_R1.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R1_001.fastq.gz 4135328135 FASTQ S38_L006_R1 unaligned CPTAC3 2bf8703d-5fed-4b22-b691-88cfb6878a75 19d0801147e8f62b84957502c20da50b {"aliquot_tag": "ALQ_7721fbaf", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.RNA-Seq.S38_L006_R2.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R2_001.fastq.gz 4804140710 FASTQ S38_L006_R2 unaligned CPTAC3 08bf4689-a42c-4109-a788-26b0d2b9b71f a645ef8c930dbf06eb9c0be3a1c920d4 {"aliquot_tag": "ALQ_7721fbaf", "sample": "S38", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.RNA-Seq.transcriptome.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.transcriptome.gdc_realn.bam 12600962689 BAM transcriptome harmonized CPTAC3 a483be44-186b-4bc7-99e4-6580d164a2c7 642ac11ce02c38531d0145414a186a9e {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.WGS.Nbc C3L-00614 AML WGS buccal_normal CPT0100780003 CPT0100780003.WholeGenome.RP-1303.bam 77844032437 BAM aligned CPTAC3 a11349ce-adc8-4f25-97ca-ce379191b64e 7709d0467634fd44d6573d106b974603 {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00614.WGS.Nbc.hg38 C3L-00614 AML WGS buccal_normal CPT0100780003 982cbe51-15db-4db8-a0d3-fbedac2e1964_wgs_gdc_realn.bam 111429457255 BAM harmonized CPTAC3 a8b1aad9-afac-494b-a513-91889fe8be96 d84fadc9b1ed394ccd79c8d896ef8ebf {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00614.WGS.Tpb C3L-00614 AML WGS tumor_peripheral_blood CPT0100860002 CPT0100860002.WholeGenome.RP-1303.bam 71597308162 BAM aligned CPTAC3 3db4f1be-37be-4292-92e6-953df83b6050 d2c34417819bae264ff575d480c3c098 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.WGS.Tpb.hg38 C3L-00614 AML WGS tumor_peripheral_blood CPT0100860002 d7f7dd24-3343-4822-9866-9fe2e596e709_wgs_gdc_realn.bam 103826110647 BAM harmonized CPTAC3 bf93279a-b4a9-4d9c-b217-b5d5fc9db592 663da1e1be736ef94166c67cb33789f7 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.WXS.Nbc C3L-00614 AML WXS buccal_normal CPT0100780003 CPT0100780003.WholeExome.RP-1303.bam 19816702382 BAM aligned CPTAC3 ef74f45a-e22f-4989-be61-24c4acab583a 59785fdaa338f6155375000c762ce2e9 {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00614.WXS.Nbc.hg38 C3L-00614 AML WXS buccal_normal CPT0100780003 982cbe51-15db-4db8-a0d3-fbedac2e1964_wxs_gdc_realn.bam 28053111464 BAM harmonized CPTAC3 5f205cdc-4bf7-429f-8eb7-12d1720e26ca cb3ba4c120aafc23f4f830c0aa2537d3 {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00614.WXS.Tpb C3L-00614 AML WXS tumor_peripheral_blood CPT0100860002 CPT0100860002.WholeExome.RP-1303.bam 23274573543 BAM aligned CPTAC3 fffa13f2-9453-414c-8ef6-d8a831016614 50a6c1670cadad987ff25f70c88ea157 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00614.WXS.Tpb.hg38 C3L-00614 AML WXS tumor_peripheral_blood CPT0100860002 d7f7dd24-3343-4822-9866-9fe2e596e709_wxs_gdc_realn.bam 32660492612 BAM harmonized CPTAC3 74a7355e-e1eb-4907-8356-43c0e90c369b 4225e8a5ced03580fff08615d00c58d3 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00617.MethArray.Green.Tbm C3L-00617 AML Methylation_Array tumor_bone_marrow CPT0325330002 205555390174_R08C01_Grn.idat 13677965 IDAT Green NA CPTAC3 ec2153a6-4b78-43f3-86d0-14c6c964a51a 8c907d8e2273c2d4c22def19c4a31c64 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.MethArray.Red.Tbm C3L-00617 AML Methylation_Array tumor_bone_marrow CPT0325330002 205555390174_R08C01_Red.idat 13677965 IDAT Red NA CPTAC3 ac763702-5267-414c-aaa0-5c917bc1f409 2e8cbe8882dfbd1143eaf4dff34d0ffb {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.miRNA-Seq.S8_L001_R1.Tbm C3L-00617 AML miRNA-Seq tumor_bone_marrow CPT0325340002 210702_UNC32-K00270_0289_AHKJ22BBXY_CCGTCC_S8_L001_R1_001.unaln.bam 333211425 BAM S8_L001_R1 unaligned CPTAC3 7e113971-7604-4219-8f6c-966af249b834 917932c3d9dd714756686711c585c270 {"aliquot_tag": "ALQ_ac4dfe90", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.miRNA-Seq.Tbm.hg38 C3L-00617 AML miRNA-Seq tumor_bone_marrow CPT0325340002 5e68f287-7c56-4d45-aa85-3c130e8a250d_mirnaseq_gdc_realn.bam 361802466 BAM harmonized CPTAC3 f7e6b5f9-670b-4954-9703-0e2bd2e9c9cd a407dcbf9432d54ca00c5a0fa7498dc5 {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.RNA-Seq.chimeric.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.chimeric.gdc_realn.bam 141154956 BAM chimeric harmonized CPTAC3 6ec9393a-3873-4dbe-b686-34b5bbb031bd cf4896c829410b9504220a065b993f5d {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.RNA-Seq.genomic.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.genomic.gdc_realn.bam 8532145032 BAM genomic harmonized CPTAC3 ae3ab3e8-067b-46aa-b848-aada1942c5d7 1469c04181c8982918ca2374b7786f6f {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.RNA-Seq.S17_L005_R1.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R1_001.fastq.gz 4548910658 FASTQ S17_L005_R1 unaligned CPTAC3 4481a421-93e2-4023-ab56-355dd1c209e4 75a42dcb6a2c27df4c3bc3136199a64e {"aliquot_tag": "ALQ_ac4dfe90", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.RNA-Seq.S17_L005_R2.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R2_001.fastq.gz 4846840395 FASTQ S17_L005_R2 unaligned CPTAC3 38596d93-afca-4dea-b256-bc13577c67a5 ab0d509c400799b8576d09dfc989d5b2 {"aliquot_tag": "ALQ_ac4dfe90", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.RNA-Seq.transcriptome.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.transcriptome.gdc_realn.bam 14591943825 BAM transcriptome harmonized CPTAC3 778f0d2b-4800-4dd1-a1a5-6b07db75b890 29af8a0c74655ed460fef3bceb110af7 {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.WGS.Nbc C3L-00617 AML WGS buccal_normal CPT0325360003 CPT0325360003.WholeGenome.RP-2158.bam 59907711900 BAM aligned CPTAC3 a199503b-401c-4823-8bfb-db4fa01fc84e 3f97328dc174e8b9bd20d314edbf2f2c {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00617.WGS.Nbc.hg38 C3L-00617 AML WGS buccal_normal CPT0325360003 a4794da6-1610-49ca-a3c9-b703572c2990_wgs_gdc_realn.bam 211054240907 BAM harmonized CPTAC3 4fe3fee3-b27e-4159-9dc8-088f09e974f5 0fad9eb32ed40412541406f46c0b3f0c {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00617.WGS.Tbm C3L-00617 AML WGS tumor_bone_marrow CPT0325330002 CPT0325330002.WholeGenome.RP-2158.bam 58236728537 BAM aligned CPTAC3 49d38d6a-f48d-484b-9ce2-40fff8f8110b 8cbecb676f9b966bfd1e48911c7e5578 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.WGS.Tbm.hg38 C3L-00617 AML WGS tumor_bone_marrow CPT0325330002 8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wgs_gdc_realn.bam 164255332846 BAM harmonized CPTAC3 98eaebef-92a8-4da4-96f8-21ef7564d427 518768f551539b7a1823442ffb7e7d40 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.WXS.Nbc C3L-00617 AML WXS buccal_normal CPT0325360003 CPT0325360003.WholeExome.RP-1303.bam 28022105365 BAM aligned CPTAC3 55803aaa-b8b3-498e-8358-a701f570a515 c11f4e2e9b39fe21bd23f8a2e5b5d9dd {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00617.WXS.Nbc.hg38 C3L-00617 AML WXS buccal_normal CPT0325360003 a4794da6-1610-49ca-a3c9-b703572c2990_wxs_gdc_realn.bam 37483160612 BAM harmonized CPTAC3 330d8216-962d-487b-9f5b-c57c7ffb7706 cb6baf43df330f79eef32a28d7cdf086 {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00617.WXS.Tbm C3L-00617 AML WXS tumor_bone_marrow CPT0325330002 CPT0325330002.WholeExome.RP-1303.bam 24132715634 BAM aligned CPTAC3 d63ff93d-2633-4955-a867-891d78cb13ac 2d95831874cb348232d4ce7932460e0f {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00617.WXS.Tbm.hg38 C3L-00617 AML WXS tumor_bone_marrow CPT0325330002 8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wxs_gdc_realn.bam 33271906056 BAM harmonized CPTAC3 39e6f6b4-818a-422f-8ffe-543ff935c9c2 00e7d8404f8b659168f12cd29ccd42b0 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-00622.MethArray.Green.T C3L-00622 PDA Methylation_Array tumor CPT0081360007 202184990008_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6b6be9d3-137b-44b5-b042-61225f851152 a70fd682c14535b650498540b8bb3587 {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor"} -C3L-00622.MethArray.Red.T C3L-00622 PDA Methylation_Array tumor CPT0081360007 202184990008_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 a022ac28-5dda-41d3-8be3-f8550e900121 988adceb0cd0c47fe2ee2057014ae79c {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor"} -C3L-00622.miRNA-Seq.A.hg38 C3L-00622 PDA miRNA-Seq tissue_normal CPT0081390006 80de0482-2005-4cde-a090-787942b243e0_mirnaseq_gdc_realn.bam 209187470 BAM harmonized CPTAC3 fbb2c2db-3c3b-4ff0-b0d6-7809b313ae0c 54bcf466f910c24166c5a666e4123e7c {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00622.miRNA-Seq.S3_L006_R1.T C3L-00622 PDA miRNA-Seq tumor CPT0081360010 181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L006_R1_001.unaln.bam 252390847 BAM S3_L006_R1 unaligned CPTAC3 35721dfb-f66c-4b1d-aa0d-62db5655d72d cedec7614f89269f329cbb2a6dc696d4 {"aliquot_tag": "ALQ_7d9af983", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00622.miRNA-Seq.S5_L001_R1.A C3L-00622 PDA miRNA-Seq tissue_normal CPT0081390006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L001_R1_001.unaln.bam 188653161 BAM S5_L001_R1 unaligned CPTAC3 383a8f83-fe88-4901-bf49-94f1bae48e2e fce6215ed915c4b2a7188ff19f14eccc {"aliquot_tag": "ALQ_fb2fa26", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00622.miRNA-Seq.T.hg38 C3L-00622 PDA miRNA-Seq tumor CPT0081360010 1ec94e74-c048-41b0-9e1f-e40597ed3469_mirnaseq_gdc_realn.bam 282150491 BAM harmonized CPTAC3 fcad9da4-4fdc-49f4-9f0c-569f0fedd487 45ba281c2925424b1e9dae72b3bb126e {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor"} -C3L-00622.RNA-Seq.chimeric.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.chimeric.gdc_realn.bam 100940354 BAM chimeric harmonized CPTAC3 e2b49ca0-11e1-480d-a867-50d67295054e a291c681956bc922a218c04f8cb7cf83 {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00622.RNA-Seq.chimeric.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.chimeric.gdc_realn.bam 68534286 BAM chimeric harmonized CPTAC3 b7e8128a-1005-43e9-b241-15cdb1be4786 e2276cd0acf9fe90fc4ecba9f2139763 {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor"} -C3L-00622.RNA-Seq.genomic.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.genomic.gdc_realn.bam 8441057751 BAM genomic harmonized CPTAC3 b79f6597-a4be-4a2a-9aa8-86017f4946ad 15e11f9b9f0a87720cfda55c7044ac7b {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00622.RNA-Seq.genomic.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.genomic.gdc_realn.bam 9986173536 BAM genomic harmonized CPTAC3 fd760bc3-b653-4fdd-8d81-f1b1143b0950 52f30a0c6d92de64dcabf4df61b4248d {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor"} -C3L-00622.RNA-Seq.S2_L001_R1.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4356844919 FASTQ S2_L001_R1 unaligned CPTAC3 49777911-e523-49e1-b3cd-8c9c7691a5d2 fb0833a672566e5cd72991c4f45da7d6 {"aliquot_tag": "ALQ_7d9af983", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00622.RNA-Seq.S2_L001_R2.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4718562450 FASTQ S2_L001_R2 unaligned CPTAC3 c273c1af-0c01-462a-baf6-6503fc50bbec 9d19362e9bb8655b84ad125925940952 {"aliquot_tag": "ALQ_7d9af983", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00622.RNA-Seq.S5_L008_R1.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3332254867 FASTQ S5_L008_R1 unaligned CPTAC3 ee0d436f-ad91-401e-9b1a-8b0633bbbfe9 74744a18b76304579abf0227c7c79666 {"aliquot_tag": "ALQ_fb2fa26", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00622.RNA-Seq.S5_L008_R2.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R2_001.fastq.gz 3763713751 FASTQ S5_L008_R2 unaligned CPTAC3 a511911a-2894-4e73-bd51-e368bafbff63 b526082dbba6fec3ca36fc4274f7d615 {"aliquot_tag": "ALQ_fb2fa26", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00622.RNA-Seq.transcriptome.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.transcriptome.gdc_realn.bam 9094546256 BAM transcriptome harmonized CPTAC3 9a51f989-7ef5-482a-9c5e-fa1e3791d4ac 479e070d5715fac28fd4e80989a624cd {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00622.RNA-Seq.transcriptome.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.transcriptome.gdc_realn.bam 11342145682 BAM transcriptome harmonized CPTAC3 abb26467-2647-45a1-81a9-f1f96c65a4b6 cace5dcaacb3f2156ed0cf19a33ce666 {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor"} -C3L-00622.Targeted.T C3L-00622 PDA Targeted_Sequencing tumor CPT0081360007_1 CPT0081360007_1.CustomSelection.RP-1303.PDO-18786.bam 5958499527 BAM aligned CPTAC3 940f5482-3c2b-473b-a0bc-7d0255567628 cbb1dcaad04a272b6e44f71b1893278b {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor"} -C3L-00622.Targeted.T.hg38 C3L-00622 PDA Targeted_Sequencing tumor CPT0081360007_1 f9b14e8c-b1f5-4114-b3ef-31a7ae5532e7_targetedsequencing_gdc_realn.bam 8257676538 BAM harmonized CPTAC3 4fab2ed1-e49d-4f1e-9e13-0fd486fec590 edda37645ab0cf313dd8fd85927e3154 {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor"} -C3L-00622.WGS.N C3L-00622 PDA WGS blood_normal CPT0081400002 CPT0081400002.WholeGenome.RP-1303.bam 79537407886 BAM aligned CPTAC3 ce8ce487-cfb1-4d83-a914-ae3adaeca46f 80f9f68422e1023e80e15dd6e0ccf4de {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00622.WGS.N.hg38 C3L-00622 PDA WGS blood_normal CPT0081400002 3b67b553-c193-4023-8753-eeb151ffae62_gdc_realn.bam 119052835810 BAM harmonized CPTAC3 286cd6a8-1673-4386-90d5-551bf89e2b6f e2394dc5c4e95ec5dc5ab31e6b805ccf {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00622.WGS.T C3L-00622 PDA WGS tumor CPT0081360007 CPT0081360007.WholeGenome.RP-1303.bam 71404693314 BAM aligned CPTAC3 ca711955-1bb3-4ee5-92d9-9d832998787d 5bf192a1c6bb57ff4755d15633175d4e {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor"} -C3L-00622.WGS.T.hg38 C3L-00622 PDA WGS tumor CPT0081360007 f9eb7dc2-04db-4c26-9015-b75706d9d7b6_gdc_realn.bam 106232789967 BAM harmonized CPTAC3 086ec943-b53a-4ccd-9594-bb20d5535f9b 92435e1207f68e608eec5c5a06347df9 {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor"} -C3L-00622.WXS.N C3L-00622 PDA WXS blood_normal CPT0081400002 CPT0081400002.WholeExome.RP-1303.bam 28035042477 BAM aligned CPTAC3 71f4bc3a-aaa0-4505-8d94-9fd88b56d182 bd83df1a5a48316b47c4b2b8de161928 {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00622.WXS.N.hg38 C3L-00622 PDA WXS blood_normal CPT0081400002 3b67b553-c193-4023-8753-eeb151ffae62_gdc_realn.bam 39029753174 BAM harmonized CPTAC3 5bd0d4cc-13f1-46e3-9a8e-2bd4949ecda8 d9b86c3210394201d39d882b32361385 {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00622.WXS.T C3L-00622 PDA WXS tumor CPT0081360007_1 CPT0081360007_1.WholeExome.RP-1303.bam 54745524469 BAM aligned CPTAC3 352d339b-f5e3-4c40-a835-d11b7c5bd67f 3434740289ae4403a03e4fdffe1cc814 {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor"} -C3L-00622.WXS.T C3L-00622 PDA WXS tumor CPT0081360007 CPT0081360007.WholeExome.RP-1303.bam 28280088542 BAM aligned CPTAC3 0a6242eb-77c2-4a4c-bcc7-3bed05c0e450 e69eaa6786df152f5fc2fa61d266f5ad {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor"} -C3L-00622.WXS.T.hg38 C3L-00622 PDA WXS tumor CPT0081360007_1 f9b14e8c-b1f5-4114-b3ef-31a7ae5532e7_wxs_gdc_realn.bam 75703277911 BAM harmonized CPTAC3 d1bcfd14-e445-4d20-885b-e3b3a32daf0d 78e5845566242658199139e7cde0bd1e {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor"} -C3L-00622.WXS.T.hg38 C3L-00622 PDA WXS tumor CPT0081360007 f9eb7dc2-04db-4c26-9015-b75706d9d7b6_gdc_realn.bam 39118512150 BAM harmonized CPTAC3 72d992cf-f5a3-4a05-a8c4-c087ab3c321a b506e20504315429020a94bf62b79955 {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor"} -C3L-00625.MethArray.Green.A C3L-00625 PDA Methylation_Array tissue_normal CPT0081500010 203561620054_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4d313f52-532c-4fde-abde-fd0837de0979 0701b6c85557fc52a45c1032d25d7561 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00625.MethArray.Green.T C3L-00625 PDA Methylation_Array tumor CPT0081470007 202178770008_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cbc049f4-85fe-4b23-a38a-d0adee0fb3f5 f362d0bc88c1676d39f1ad1d0bfd0d45 {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor"} -C3L-00625.MethArray.Red.A C3L-00625 PDA Methylation_Array tissue_normal CPT0081500010 203561620054_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 ffd83c2b-979b-472a-987e-999f15cbae9c e897c8ff7ccfe0bb688f0f0fe0495e1d {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00625.MethArray.Red.T C3L-00625 PDA Methylation_Array tumor CPT0081470007 202178770008_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 bc8a8b7d-6f73-444a-8b90-086aba79b386 6224a769fe7e9b92591b719363b2754e {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor"} -C3L-00625.miRNA-Seq.S20_L001_R1.T C3L-00625 PDA miRNA-Seq tumor CPT0081470010 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L001_R1_001.unaln.bam 261216042 BAM S20_L001_R1 unaligned CPTAC3 81385cdc-dacc-4e70-825f-be2e84d1e46f 55570112a1ae7592c7e36a9d7b221684 {"aliquot_tag": "ALQ_5dffe08b", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00625.miRNA-Seq.T.hg38 C3L-00625 PDA miRNA-Seq tumor CPT0081470010 cefb842d-0eee-4a00-8ccb-541a4655d842_mirnaseq_gdc_realn.bam 287470974 BAM harmonized CPTAC3 ea0a3383-e4b2-4cfa-b2e3-ba930473d1b3 0fd3c5751e37ef298ed9d468998959c0 {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor"} -C3L-00625.RNA-Seq.chimeric.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.chimeric.gdc_realn.bam 40055294 BAM chimeric harmonized CPTAC3 2d69979a-35f7-4b4d-8b19-493a41330948 873e70376e244db0b05eab9e5302a44d {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor"} -C3L-00625.RNA-Seq.genomic.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.genomic.gdc_realn.bam 9261751336 BAM genomic harmonized CPTAC3 24ebd715-743a-4e7b-8a74-8772d7ada81c e8299e90e8070f3cc1b66c8ed0aa88a6 {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor"} -C3L-00625.RNA-Seq.S1_L001_R1.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3611516224 FASTQ S1_L001_R1 unaligned CPTAC3 637a1123-2d19-4fb8-8c2b-62b5244519c7 a64ac1353e2b3dd303b2e4ab64aac463 {"aliquot_tag": "ALQ_5dffe08b", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00625.RNA-Seq.S1_L001_R2.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3919468106 FASTQ S1_L001_R2 unaligned CPTAC3 cc431b64-163e-4e98-a110-cb5692802d83 a99a010e9102f83437abee79861afbc5 {"aliquot_tag": "ALQ_5dffe08b", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00625.RNA-Seq.transcriptome.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.transcriptome.gdc_realn.bam 9052602368 BAM transcriptome harmonized CPTAC3 951f536d-b743-4497-9555-113a6a4edc19 fc71a4c086c2fc267db9b51c4cd63ad9 {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor"} -C3L-00625.Targeted.T C3L-00625 PDA Targeted_Sequencing tumor CPT0081470007_1 CPT0081470007_1.CustomSelection.RP-1303.PDO-18786.bam 6419961426 BAM aligned CPTAC3 e6b40928-551e-427f-9b54-5e97c72fb0dc dffc15ba072a185875679a104b831795 {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor"} -C3L-00625.Targeted.T.hg38 C3L-00625 PDA Targeted_Sequencing tumor CPT0081470007_1 e9f04d79-6cd2-4618-98ae-f75b2bf403bc_targetedsequencing_gdc_realn.bam 8980121130 BAM harmonized CPTAC3 88d073f8-53af-489c-bb3e-cf9ace8467b8 b9b2a455e3b0b6f4a43967309ed3fc74 {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor"} -C3L-00625.WGS.A C3L-00625 PDA WGS tissue_normal CPT0081500010 CPT0081500010.WholeGenome.RP-1303.bam 64292770574 BAM aligned CPTAC3 623c1eb9-f32a-4b05-8b04-5193c50e9ffe ca0414dd20520e369f4d49a85d9cb4d8 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00625.WGS.A.hg38 C3L-00625 PDA WGS tissue_normal CPT0081500010 c24e555d-bc33-4b9d-a08a-cfd379ed765d_wgs_gdc_realn.bam 94046916326 BAM harmonized CPTAC3 5cecebe2-588a-41d9-9604-ae02ff2a35ab 952f060df51c609c47a6e85ab107c145 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00625.WGS.N C3L-00625 PDA WGS blood_normal CPT0081510001 CPT0081510001.WholeGenome.RP-1303.bam 69553825997 BAM aligned CPTAC3 14f2aedf-486f-4d3a-aa79-58f86a5fe667 373238c1265387b9854a503ca1ee23ca {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal"} -C3L-00625.WGS.N.hg38 C3L-00625 PDA WGS blood_normal CPT0081510001 cd0605d3-9330-41c3-904c-3fd3f3724e98_gdc_realn.bam 104347332492 BAM harmonized CPTAC3 acb673c1-1691-4dc0-87df-c45130643e4f c7a2bde890a2707c60611da9c690b8d9 {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal"} -C3L-00625.WGS.T C3L-00625 PDA WGS tumor CPT0081470007 CPT0081470007.WholeGenome.RP-1303.bam 61598345610 BAM aligned CPTAC3 1d309b50-7c31-4a8e-a7d5-f6f3b40e239b e2b06af697523d05ed78362fe097f11a {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor"} -C3L-00625.WGS.T.hg38 C3L-00625 PDA WGS tumor CPT0081470007 35cbfe6b-e6d9-4191-8f9f-c1a53233e611_gdc_realn.bam 90292248464 BAM harmonized CPTAC3 9a5c7c77-02ed-4bf2-bf16-f08947fabadd 05a529fa3ca48147f3a97b8ca00a791d {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor"} -C3L-00625.WXS.A C3L-00625 PDA WXS tissue_normal CPT0081500010 CPT0081500010.WholeExome.RP-1303.bam 27140036698 BAM aligned CPTAC3 a807c72b-4d9a-4d2a-99dd-ed3253c85b1d 433fb6d866ce8a2bcb32948b22cd1635 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00625.WXS.A.hg38 C3L-00625 PDA WXS tissue_normal CPT0081500010 c24e555d-bc33-4b9d-a08a-cfd379ed765d_wxs_gdc_realn.bam 36565288826 BAM harmonized CPTAC3 729afdfb-b616-4667-9572-3a0a37785b44 f01f9107ee167ef7980a536337831219 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00625.WXS.N C3L-00625 PDA WXS blood_normal CPT0081510001 CPT0081510001.WholeExome.RP-1303.bam 27744451883 BAM aligned CPTAC3 74524b70-a2d6-403e-9c84-946656fc796c 455e1c14a7fe408ec303d49a7e22bf8c {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal"} -C3L-00625.WXS.N.hg38 C3L-00625 PDA WXS blood_normal CPT0081510001 cd0605d3-9330-41c3-904c-3fd3f3724e98_gdc_realn.bam 37252952356 BAM harmonized CPTAC3 b7634f4b-db0d-458d-9d20-2053b98254dd bc48ae8fc97bc0c224f322fe1c28c186 {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal"} -C3L-00625.WXS.T C3L-00625 PDA WXS tumor CPT0081470007_1 CPT0081470007_1.WholeExome.RP-1303.bam 70487273351 BAM aligned CPTAC3 7c93d9f1-ada1-4085-8ce1-2cdbffcdae7c d35e91055738b5c8110e3f73b193e699 {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor"} -C3L-00625.WXS.T C3L-00625 PDA WXS tumor CPT0081470007 CPT0081470007.WholeExome.RP-1303.bam 41471447570 BAM aligned CPTAC3 41249878-7a9e-4e87-b6e6-308572dc2136 880e3f573f36b1410733426f6ee960aa {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor"} -C3L-00625.WXS.T.hg38 C3L-00625 PDA WXS tumor CPT0081470007_1 e9f04d79-6cd2-4618-98ae-f75b2bf403bc_wxs_gdc_realn.bam 97609436413 BAM harmonized CPTAC3 cc51d894-8cba-4bc0-a3ec-b1af4036ec11 b326b05e22bdfa376ebbbfc100ad3edc {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor"} -C3L-00625.WXS.T.hg38 C3L-00625 PDA WXS tumor CPT0081470007 35cbfe6b-e6d9-4191-8f9f-c1a53233e611_gdc_realn.bam 57568809799 BAM harmonized CPTAC3 e3b859e5-ffba-400e-9e76-723f6d33bf7d 109a0dea3cf7b3cfd92666067c5f5566 {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor"} -C3L-00640.MethArray.Green.A C3L-00640 PDA Methylation_Array tissue_normal CPT0064570009 203561450048_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d249d09d-c099-4b47-9972-66cd0cfb6158 47f175d9d2ad7a1ff604d65377f678d0 {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.MethArray.Green.T C3L-00640 PDA Methylation_Array tumor CPT0064520010 202176300001_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8efb1d21-214c-495d-a868-29fc3ec955ad 195a48d2b626c9f9d995205797d9324e {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor"} -C3L-00640.MethArray.Red.A C3L-00640 PDA Methylation_Array tissue_normal CPT0064570009 203561450048_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 8687f994-2caa-4f29-9195-7a4ad451dc7f 7957d50701953db661c30c9d8370cfec {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.MethArray.Red.T C3L-00640 PDA Methylation_Array tumor CPT0064520010 202176300001_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 3693c70d-f8e7-411e-8c92-58844c2f1f74 04f069265efc4c3cdc16f6b18054e1c7 {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor"} -C3L-00640.miRNA-Seq.A.hg38 C3L-00640 PDA miRNA-Seq tissue_normal CPT0064570006 9778b551-538d-49de-873d-3480ff36d93c_mirnaseq_gdc_realn.bam 256166602 BAM harmonized CPTAC3 03230024-88e7-4539-849f-3a2abeb8810f 6bb5c33028fa7e9f09500a7abe561991 {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.miRNA-Seq.S4_L001_R1.A C3L-00640 PDA miRNA-Seq tissue_normal CPT0064570006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 229860266 BAM S4_L001_R1 unaligned CPTAC3 89f0efd7-3d60-4441-ae4d-f2b4162c4708 27a9b7f22ffd0b323de43cb3b49ce066 {"aliquot_tag": "ALQ_21699acf", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.miRNA-Seq.S5_L001_R1.T C3L-00640 PDA miRNA-Seq tumor CPT0064520007 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L001_R1_001.unaln.bam 194343137 BAM S5_L001_R1 unaligned CPTAC3 48c801c5-36b7-4856-b0c0-18b130aa0e0d 564624e83cbd316c342c8b47b6c21157 {"aliquot_tag": "ALQ_9e8e2529", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00640.miRNA-Seq.T.hg38 C3L-00640 PDA miRNA-Seq tumor CPT0064520007 8e057a91-a53b-4e85-bdf9-3a8bd834f4b5_mirnaseq_gdc_realn.bam 216877342 BAM harmonized CPTAC3 47d0e081-f2e3-4f35-9c81-1516fe07dd8f a97f1c95ec2729455db0529caf76b5a6 {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor"} -C3L-00640.RNA-Seq.chimeric.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.chimeric.gdc_realn.bam 134305622 BAM chimeric harmonized CPTAC3 6f62f766-236c-4a05-b2ab-f473fffe6c4f 23b091067beaf6e8c6d41286c2f2a209 {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.RNA-Seq.chimeric.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.chimeric.gdc_realn.bam 51723158 BAM chimeric harmonized CPTAC3 d3b590f2-568e-4659-8d30-19cd6ae7ba99 68d033c8a3fcd84f3dcad83dd790a469 {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor"} -C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.genomic.gdc_realn.bam 8486025625 BAM genomic harmonized CPTAC3 9b857ade-e233-41cf-9075-1b03eb78bd0e 3bede5f6063622cd6b1b18aeefb5f1e7 {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.genomic.gdc_realn.bam 6470793023 BAM genomic harmonized CPTAC3 f2232260-0ac5-4572-9555-afc79d89a817 ac1a026859f5b849e4245158454ee8d6 {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor"} -C3L-00640.RNA-Seq.S12_L003_R1.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 2855966677 FASTQ S12_L003_R1 unaligned CPTAC3 33806087-ff71-44e1-86ac-67e5e48af603 b076f55b38e4cfc909761c6e6765e54d {"aliquot_tag": "ALQ_9e8e2529", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00640.RNA-Seq.S12_L003_R2.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 3207024272 FASTQ S12_L003_R2 unaligned CPTAC3 1aae486e-75c6-44a9-a69a-56459137c071 33fd77ce5f4979fd79b6c434e7e0fa5e {"aliquot_tag": "ALQ_9e8e2529", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00640.RNA-Seq.S12_L008_R1.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R1_001.fastq.gz 3689683237 FASTQ S12_L008_R1 unaligned CPTAC3 6cc3e251-b039-4f7a-9f24-f013c999082e 6ae014b2ae3de4b2e6e3b079baa1f4a6 {"aliquot_tag": "ALQ_21699acf", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.RNA-Seq.S12_L008_R2.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R2_001.fastq.gz 4124785029 FASTQ S12_L008_R2 unaligned CPTAC3 1dad8c71-f547-4abf-bfeb-4c82d1f0a3a9 afa49be09a1c4b8a3839816bcd6c8033 {"aliquot_tag": "ALQ_21699acf", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.RNA-Seq.transcriptome.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.transcriptome.gdc_realn.bam 10522513183 BAM transcriptome harmonized CPTAC3 a6aac9d9-ac79-44ba-8472-f08c2a04cd48 5015c37df4c7b6a89c6e5854cf92bf5c {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.RNA-Seq.transcriptome.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.transcriptome.gdc_realn.bam 8085496375 BAM transcriptome harmonized CPTAC3 b009c09e-96fc-4787-8eb5-ce53724d3806 5cd4da70ad4dfe0134ae05ed5bde248b {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor"} -C3L-00640.Targeted.T C3L-00640 PDA Targeted_Sequencing tumor CPT0064520010_1 CPT0064520010_1.CustomSelection.RP-1303.PDO-18786.bam 5235727527 BAM aligned CPTAC3 8f62a0d4-8d30-4371-88dc-992d7e461b9c cfb819810b19ea8390d146a455d569bb {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor"} -C3L-00640.Targeted.T.hg38 C3L-00640 PDA Targeted_Sequencing tumor CPT0064520010_1 9fbe723b-720d-444d-9bec-9a75c2f4022d_targetedsequencing_gdc_realn.bam 7404642989 BAM harmonized CPTAC3 c112a8bf-2d6f-4392-a623-187df2a1392b 99ce762056ab70bf6466e6c3950c5979 {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor"} -C3L-00640.WGS.A C3L-00640 PDA WGS tissue_normal CPT0064570009 CPT0064570009.WholeGenome.RP-1303.bam 60228791575 BAM aligned CPTAC3 41b2231a-a3fb-4305-a121-6b9f8581eab8 a0eecb8c4201f0e6882656a4fc3358d0 {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.WGS.A.hg38 C3L-00640 PDA WGS tissue_normal CPT0064570009 e3fcb2e6-a532-445e-98f1-aeb3cf3e457f_wgs_gdc_realn.bam 88123286830 BAM harmonized CPTAC3 d3612e91-212b-4111-93c8-ca8c374139c1 615a79f2d7d78fca1264a4f781db6e83 {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.WGS.N C3L-00640 PDA WGS blood_normal CPT0066660002 CPT0066660002.WholeGenome.RP-1303.bam 78711340644 BAM aligned CPTAC3 3be61cb4-925c-4226-a3a9-1ff25032edfc 1e2b6b2bf669f24a962a21a8acf74204 {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00640.WGS.N.hg38 C3L-00640 PDA WGS blood_normal CPT0066660002 7d8b1cc7-e9d2-406f-ad58-80a02eb2ad47_gdc_realn.bam 116404250023 BAM harmonized CPTAC3 d6c5a3a7-bd00-43a1-91c5-eb44e001f740 0a2003ee3dc2f410517b33655cd3f617 {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00640.WGS.T C3L-00640 PDA WGS tumor CPT0064520010 CPT0064520010.WholeGenome.RP-1303.bam 73949219579 BAM aligned CPTAC3 6ae0abc1-c9da-4e24-9002-661a4fc9c997 7361034c4f5017d06dc8eddf96bb1f9d {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor"} -C3L-00640.WGS.T.hg38 C3L-00640 PDA WGS tumor CPT0064520010 2998d128-cf02-44f9-a832-ee94ce2d4d56_gdc_realn.bam 108723052847 BAM harmonized CPTAC3 ef416433-6b55-4966-9547-7c6f5733c31a 96a18efc215dc004a870c6abfc18b31c {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor"} -C3L-00640.WXS.A C3L-00640 PDA WXS tissue_normal CPT0064570009 CPT0064570009.WholeExome.RP-1303.bam 23903774152 BAM aligned CPTAC3 943b86fd-d700-4335-815e-220a3faf58af 70790c62c89e708933bffec8cda7831a {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.WXS.A.hg38 C3L-00640 PDA WXS tissue_normal CPT0064570009 e3fcb2e6-a532-445e-98f1-aeb3cf3e457f_wxs_gdc_realn.bam 32292285221 BAM harmonized CPTAC3 ab91f1f8-1f1c-4c97-a264-36d19213dea0 6fb99e2464c4d6d82eaf6018556d3a6d {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00640.WXS.N C3L-00640 PDA WXS blood_normal CPT0066660002 CPT0066660002.WholeExome.RP-1303.bam 27191680931 BAM aligned CPTAC3 856bc8a8-a9ad-44a3-b6b3-98f7fa5a3de7 996e85022ab28ce4e0dcefb0ba164906 {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00640.WXS.N.hg38 C3L-00640 PDA WXS blood_normal CPT0066660002 7d8b1cc7-e9d2-406f-ad58-80a02eb2ad47_gdc_realn.bam 38708777307 BAM harmonized CPTAC3 cfd64f47-be0f-4cea-b148-888daa793c72 bd55966d7762fa22f47160a2e9b9f1fe {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00640.WXS.T C3L-00640 PDA WXS tumor CPT0064520010_1 CPT0064520010_1.WholeExome.RP-1303.bam 50680026522 BAM aligned CPTAC3 21f10009-3430-41e7-965b-2b923c5d1484 095cf8a927e3988fe9f3635f74b3dc03 {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor"} -C3L-00640.WXS.T C3L-00640 PDA WXS tumor CPT0064520010 CPT0064520010.WholeExome.RP-1303.bam 24514036458 BAM aligned CPTAC3 ee02cc9e-644a-4e7c-b7b5-86dfd26c29b3 05968fca508542927ed91cb097bbc1de {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor"} -C3L-00640.WXS.T.hg38 C3L-00640 PDA WXS tumor CPT0064520010_1 9fbe723b-720d-444d-9bec-9a75c2f4022d_wxs_gdc_realn.bam 70016410810 BAM harmonized CPTAC3 bc0b29fb-cfaa-4edf-b9ef-b4534bfee27b de0fe95deeacea2d802db4114ee98986 {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor"} -C3L-00640.WXS.T.hg38 C3L-00640 PDA WXS tumor CPT0064520010 2998d128-cf02-44f9-a832-ee94ce2d4d56_gdc_realn.bam 34321665174 BAM harmonized CPTAC3 cf2f53d0-1e24-43ff-a364-5b81c2ce1bd2 4ed2da5e9946939cdfc836e1d7503397 {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor"} -C3L-00674.MethArray.Green.T C3L-00674 GBM Methylation_Array tumor CPT0064650009 202178770143_R04C01_Grn.idat 13676242 IDAT Green NA CPTAC3 c662fdd1-56ac-44e1-a5a3-a39762630667 4c638ba9f951a47576eb80a9ab8ce5ed {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor"} -C3L-00674.MethArray.Red.T C3L-00674 GBM Methylation_Array tumor CPT0064650009 202178770143_R04C01_Red.idat 13676242 IDAT Red NA CPTAC3 ed051d00-7903-4c3e-8b7a-62f9481737b4 e5c8d285781de5f0e345c988155863a7 {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor"} -C3L-00674.miRNA-Seq.S19_L001_R1.T C3L-00674 GBM miRNA-Seq tumor CPT0064650006 181113_UNC31-K00269_0164_AH23NNBBXY_TACAGC_S19_L001_R1_001.unaln.bam 190407441 BAM S19_L001_R1 unaligned CPTAC3 871bc308-0400-45f3-8938-afca148bc753 668e27b4ab24f296cdf907fd31127615 {"aliquot_tag": "ALQ_dd3dbb01", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00674.miRNA-Seq.T.hg38 C3L-00674 GBM miRNA-Seq tumor CPT0064650006 30e4ac2a-bd5f-4644-a3d4-573cccac81f2_mirnaseq_gdc_realn.bam 211611405 BAM harmonized CPTAC3 a3f87ee0-718d-48c8-90b5-e79220afcb9d cb4a14fdf1700a0ec42429ef7b48f0aa {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor"} -C3L-00674.RNA-Seq.chimeric.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.chimeric.gdc_realn.bam 33800023 BAM chimeric harmonized CPTAC3 de076b7d-5570-47ce-9db2-e3b16c68d6e2 eb2ddf749418c1b9376729819cc0a93e {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor"} -C3L-00674.RNA-Seq.genomic.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.genomic.gdc_realn.bam 9280943548 BAM genomic harmonized CPTAC3 38b70c75-2f50-497c-8cba-35b3ef485f52 6d9e1f3aa013532f797b609847dd01dd {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor"} -C3L-00674.RNA-Seq.S11_L003_R1.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 4303463091 FASTQ S11_L003_R1 unaligned CPTAC3 7e77417b-9b2c-4504-827c-af04a22624be 1090ca720babee6564cc6a44c5226cc4 {"aliquot_tag": "ALQ_dd3dbb01", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00674.RNA-Seq.S11_L003_R2.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4600073376 FASTQ S11_L003_R2 unaligned CPTAC3 eaf91490-e4f5-470e-83fd-9df23bc5a93a e690d2d973a92790da8975f1bb2ed9d6 {"aliquot_tag": "ALQ_dd3dbb01", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00674.RNA-Seq.transcriptome.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.transcriptome.gdc_realn.bam 10733575831 BAM transcriptome harmonized CPTAC3 ac186626-d75d-4762-8615-31bd9bc75028 98af3812ca44421254bc9e6c5cabd793 {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor"} -C3L-00674.WGS.N C3L-00674 GBM WGS blood_normal CPT0066670002 CPT0066670002.WholeGenome.RP-1303.bam 78380437858 BAM aligned CPTAC3 eb6ec959-77c9-4c70-8bbd-726817a98b17 fefd1a15233b2e7d9f9bbd3b121bea2c {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal"} -C3L-00674.WGS.N.hg38 C3L-00674 GBM WGS blood_normal CPT0066670002 7a56ec48-005d-401e-b8fc-30a60472483d_gdc_realn.bam 117728414212 BAM harmonized CPTAC3 8eb43b54-434f-4d96-884d-0f1d3a9cdc7b 99d0c1701c0627cbcaba4e9c1a2c0037 {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal"} -C3L-00674.WGS.T C3L-00674 GBM WGS tumor CPT0064650009 CPT0064650009.WholeGenome.RP-1303.bam 64020468730 BAM aligned CPTAC3 3b33374e-f8d6-4233-8673-686df51e608c 49a7d1bbed3da649861f6e864a483da2 {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor"} -C3L-00674.WGS.T.hg38 C3L-00674 GBM WGS tumor CPT0064650009 6d3bba42-a739-401a-b95c-44a01c7780c0_gdc_realn.bam 97182893414 BAM harmonized CPTAC3 8c1b29a0-d802-44cc-8629-74050711a8fa 4ce20c9b8cde041841d155205857c93f {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor"} -C3L-00674.WXS.N C3L-00674 GBM WXS blood_normal CPT0066670002 CPT0066670002.WholeExome.RP-1303.bam 30945238520 BAM aligned CPTAC3 e8e21a83-8e17-4c01-b242-f9381dddf432 4b775f259eebdfecb43b5d05fb338006 {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal"} -C3L-00674.WXS.N.hg38 C3L-00674 GBM WXS blood_normal CPT0066670002 7a56ec48-005d-401e-b8fc-30a60472483d_gdc_realn.bam 42513543162 BAM harmonized CPTAC3 4e1e2254-11a7-4904-8519-98ac7b81c50e 2f3d803672bcfa3b29e2b7b8e75e7ba1 {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal"} -C3L-00674.WXS.T C3L-00674 GBM WXS tumor CPT0064650009 CPT0064650009.WholeExome.RP-1303.bam 31295052178 BAM aligned CPTAC3 fd282c80-59d6-4c11-a2cf-5a5b4f88c7d7 4a56b01d0d45f188da14bc30ff637b6c {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor"} -C3L-00674.WXS.T.hg38 C3L-00674 GBM WXS tumor CPT0064650009 6d3bba42-a739-401a-b95c-44a01c7780c0_gdc_realn.bam 43320163729 BAM harmonized CPTAC3 c7b6dac9-d738-416d-b61a-74c2f1be77aa a73c8a8680efbd27d1697de20c47d1cb {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor"} -C3L-00677.MethArray.Green.T C3L-00677 GBM Methylation_Array tumor CPT0071100006 202176290047_R07C01_Grn.idat 13676225 IDAT Green NA CPTAC3 0c116252-8f2d-4c8e-b84a-be332bf3a7e4 083370fe915f29d687c819e10e851bdb {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor"} -C3L-00677.MethArray.Red.T C3L-00677 GBM Methylation_Array tumor CPT0071100006 202176290047_R07C01_Red.idat 13676225 IDAT Red NA CPTAC3 672eb168-ce96-4715-993f-80e36f4e215e 4ae1eed3aad96297e3776840e6889666 {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor"} -C3L-00677.miRNA-Seq.S45_L006_R1.T C3L-00677 GBM miRNA-Seq tumor CPT0071100009 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L006_R1_001.unaln.bam 209563675 BAM S45_L006_R1 unaligned CPTAC3 ae052b15-588d-4596-af58-46662b3e852a e3cf384ff3306531dae0642a8ef564c7 {"aliquot_tag": "ALQ_6f53661", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00677.miRNA-Seq.T.hg38 C3L-00677 GBM miRNA-Seq tumor CPT0071100009 d7481d68-fcff-4ec1-a2d5-1c837aada39a_mirnaseq_gdc_realn.bam 233302361 BAM harmonized CPTAC3 e4ff461b-7daf-4037-9290-4ddab4fb139d 172fe0fc7da7a4287b9cebedc7feac3d {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor"} -C3L-00677.RNA-Seq.chimeric.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.chimeric.gdc_realn.bam 49364752 BAM chimeric harmonized CPTAC3 9e78092c-adea-46cc-97ee-14f67043faed 510701c2d7d05c76a187371623036b6c {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor"} -C3L-00677.RNA-Seq.genomic.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.genomic.gdc_realn.bam 9224989980 BAM genomic harmonized CPTAC3 1d031db5-efff-4ec6-af8e-7855b32cf89e 346abb978df452b60b6ed624401766fd {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor"} -C3L-00677.RNA-Seq.S4_L007_R1.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R1_001.fastq.gz 4173547985 FASTQ S4_L007_R1 unaligned CPTAC3 304fea20-f8c8-4481-b569-d4f292f18ac7 488157bf931467293d12358ef83a4bb5 {"aliquot_tag": "ALQ_6f53661", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00677.RNA-Seq.S4_L007_R2.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4396146449 FASTQ S4_L007_R2 unaligned CPTAC3 792f7658-8838-4de8-956f-b0680b8609eb 044db6c08036f03955215ebde642d940 {"aliquot_tag": "ALQ_6f53661", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00677.RNA-Seq.transcriptome.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.transcriptome.gdc_realn.bam 9050301878 BAM transcriptome harmonized CPTAC3 8872e6dd-cce4-43d4-ad39-419250d91479 83fabfa483431eb349ad6d85369e1cb4 {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor"} -C3L-00677.WGS.N C3L-00677 GBM WGS blood_normal CPT0071960002 CPT0071960002.WholeGenome.RP-1303.bam 62320693548 BAM aligned CPTAC3 2bb7a42a-27a8-427d-98de-306a282eeabf 1febf3d5b690c27f5a87239397bd63ef {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal"} -C3L-00677.WGS.N.hg38 C3L-00677 GBM WGS blood_normal CPT0071960002 5cee818c-61e8-4441-bd9a-5c984cde9c6b_gdc_realn.bam 94179524762 BAM harmonized CPTAC3 3c36b7bb-4d3d-4702-94f1-4618d96cbe82 f69151043c0d0fd2cf73ae839fddbcfc {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal"} -C3L-00677.WGS.T C3L-00677 GBM WGS tumor CPT0071100006 CPT0071100006.WholeGenome.RP-1303.bam 70990599021 BAM aligned CPTAC3 3d537bed-dd28-4e5e-9133-8b6a476120d2 86e41b742e4fdef425c9ef1d5877337b {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor"} -C3L-00677.WGS.T.hg38 C3L-00677 GBM WGS tumor CPT0071100006 1d6c4f0f-09c4-4472-a19e-30ee7e0ecf64_gdc_realn.bam 104577851813 BAM harmonized CPTAC3 9bbac005-ca4b-48ba-b0c5-2cfa573227e1 5ffda9e8c4342bccf8a7e2a9fedece59 {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor"} -C3L-00677.WXS.N C3L-00677 GBM WXS blood_normal CPT0071960002 CPT0071960002.WholeExome.RP-1303.bam 43110731198 BAM aligned CPTAC3 27b62576-2c2e-4013-9183-a920444738b3 155911a049352c926ff5b1346020de47 {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal"} -C3L-00677.WXS.N.hg38 C3L-00677 GBM WXS blood_normal CPT0071960002 5cee818c-61e8-4441-bd9a-5c984cde9c6b_gdc_realn.bam 59030038633 BAM harmonized CPTAC3 f2db30f8-5dd8-464d-a551-bd630609a7a6 1bf81be7f76168167b17801e58c97ea3 {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal"} -C3L-00677.WXS.T C3L-00677 GBM WXS tumor CPT0071100006 CPT0071100006.WholeExome.RP-1303.bam 30353255153 BAM aligned CPTAC3 d4ae9b28-630b-4ab2-8110-e84f230b856c 180b61c016d74376ef10f60ca83418ca {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor"} -C3L-00677.WXS.T.hg38 C3L-00677 GBM WXS tumor CPT0071100006 1d6c4f0f-09c4-4472-a19e-30ee7e0ecf64_gdc_realn.bam 42117378519 BAM harmonized CPTAC3 6b20358c-b500-4e51-92cb-a8cf84bc13db 96e12d1bac7c0120d1a8418ba5b1ba8f {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor"} -C3L-00765.MethArray.Green.T C3L-00765 CCRCC Methylation_Array tumor CPT0015910006 202184990066_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6fe6ed90-3714-48fd-8256-84793941ad6d b61f57780df63f2aa041094bc9a2189a {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor"} -C3L-00765.MethArray.Red.T C3L-00765 CCRCC Methylation_Array tumor CPT0015910006 202184990066_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 40b5ad16-c4b6-4b24-bfd8-9523ed75652e 22189bc949fc322c1a4acea1ce930e26 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor"} -C3L-00765.miRNA-Seq.S10_L003_R1.T C3L-00765 CCRCC miRNA-Seq tumor CPT0015910008 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L003_R1_001.unaln.bam 271893346 BAM S10_L003_R1 unaligned CPTAC3 daf7c5f2-42a6-4133-9f30-6d4efedc70cc b5efef11720d9c179e96b26eabd9ace0 {"aliquot_tag": "ALQ_92e180be", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00765.miRNA-Seq.T.hg38 C3L-00765 CCRCC miRNA-Seq tumor CPT0015910008 7106fd9b-ff19-427f-abec-4d9bb2dbce09_mirnaseq_gdc_realn.bam 309300392 BAM harmonized CPTAC3 b019bf27-084f-4150-a277-8d588282123f 1e350a8573cfa2446dde0449154808e7 {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor"} -C3L-00765.RNA-Seq.chimeric.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.chimeric.gdc_realn.bam 91205230 BAM chimeric harmonized CPTAC3 0c43f2a9-fc46-40c0-9361-50f0ae2990ff 25a9a4f2999e566717b236e5ee63b51b {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor"} -C3L-00765.RNA-Seq.genomic.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.genomic.gdc_realn.bam 7661869384 BAM genomic harmonized CPTAC3 462f7b46-4438-4602-97b1-8e12fe2a785c fc7d5b35a2e68da1d0c6b21e75b13f82 {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor"} -C3L-00765.RNA-Seq.S6_L002_R1.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3650442725 FASTQ S6_L002_R1 unaligned CPTAC3 d87a8aa1-7a2a-4637-9b19-543b5bc959b2 04aae6c1231999eb788ed942c820bae8 {"aliquot_tag": "ALQ_92e180be", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00765.RNA-Seq.S6_L002_R2.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4016717982 FASTQ S6_L002_R2 unaligned CPTAC3 3b56ffa0-2871-4d85-b663-d6c666343b72 47fcf06657f37f6ef5abfcda7b59571f {"aliquot_tag": "ALQ_92e180be", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00765.RNA-Seq.transcriptome.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.transcriptome.gdc_realn.bam 8730220593 BAM transcriptome harmonized CPTAC3 9cb7b9c0-9fbc-4f7b-94da-c0bfe2a64d5b 8df68a250501e62d2d9fdda0048ee55f {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor"} -C3L-00765.WGS.N C3L-00765 CCRCC WGS blood_normal CPT0018310001 CPT0018310001.WholeGenome.RP-1303.bam 66991096444 BAM aligned CPTAC3 5d99c71e-0455-4d03-b145-c41209857978 e7f441a7f12daec7c30b9ce3c14a4259 {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00765.WGS.N.hg38 C3L-00765 CCRCC WGS blood_normal CPT0018310001 309ea7b2-acb9-483e-b522-14e1bcc1518f_gdc_realn.bam 100395994243 BAM harmonized CPTAC3 2da471be-93f2-4674-82d7-93c868ab4faa 23aeb79bd19d828bdff83d6be85040fc {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00765.WGS.T C3L-00765 CCRCC WGS tumor CPT0015910006 CPT0015910006.WholeGenome.RP-1303.bam 97534714650 BAM aligned CPTAC3 27bbda3c-ba5b-44d8-bc27-823e57115fc4 8e583fc55c49f127a05742eb7e8a89a5 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor"} -C3L-00765.WGS.T.hg38 C3L-00765 CCRCC WGS tumor CPT0015910006 f5b3f122-436a-45d1-bb80-ee76ceaf7d48_gdc_realn.bam 147999449972 BAM harmonized CPTAC3 c2c631e0-2f69-4f59-8b69-b6a7f1332a2d f964cb0b44e9eaf50e2cc292abde7921 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor"} -C3L-00765.WXS.N C3L-00765 CCRCC WXS blood_normal CPT0018310001 CPT0018310001.WholeExome.RP-1303.bam 25839792239 BAM aligned CPTAC3 af7ef614-e012-4d40-8c4d-8e3b71680e76 5c4de4c89782a3601fe91b6a66bf9417 {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00765.WXS.N.hg38 C3L-00765 CCRCC WXS blood_normal CPT0018310001 309ea7b2-acb9-483e-b522-14e1bcc1518f_gdc_realn.bam 35636938165 BAM harmonized CPTAC3 9ddb3d69-5e2b-4cf1-981a-2139cc5cd750 f9c84d21e55e17d297d50fbc5d6856bb {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00765.WXS.T C3L-00765 CCRCC WXS tumor CPT0015910006 CPT0015910006.WholeExome.RP-1303.bam 39646267371 BAM aligned CPTAC3 c8b5c3d2-5565-4fb5-994d-813ce68545cd b69019c4838bf8fdbc4b8cde1f2bc6c4 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor"} -C3L-00765.WXS.T.hg38 C3L-00765 CCRCC WXS tumor CPT0015910006 f5b3f122-436a-45d1-bb80-ee76ceaf7d48_gdc_realn.bam 54196402121 BAM harmonized CPTAC3 4325aa80-b930-4155-b568-84d10dcd336e f0873bdaa844856ad1fa02b714fd76a4 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor"} -C3L-00766.MethArray.Green.T C3L-00766 CCRCC Methylation_Array tumor CPT0025170009 202176290046_R03C01_Grn.idat 13676215 IDAT Green NA CPTAC3 fdaa5128-203e-4f85-bfdb-de35e0b11839 c4e416e5074c418515da36495c6d6b89 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor"} -C3L-00766.MethArray.Red.T C3L-00766 CCRCC Methylation_Array tumor CPT0025170009 202176290046_R03C01_Red.idat 13676215 IDAT Red NA CPTAC3 b3525088-db4f-44f6-bdb3-05997ebaf04a 57eb7d47f666d628f6182400c3970d73 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor"} -C3L-00766.miRNA-Seq.S3_L003_R1.T C3L-00766 CCRCC miRNA-Seq tumor CPT0025170006 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L003_R1_001.unaln.bam 277923704 BAM S3_L003_R1 unaligned CPTAC3 ff007739-de65-4113-b468-e75bb802de5d a0560ffc50c7569738975453f76a4884 {"aliquot_tag": "ALQ_98c5dd97", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00766.miRNA-Seq.T.hg38 C3L-00766 CCRCC miRNA-Seq tumor CPT0025170006 ec13b3c7-3d76-44fd-985d-de6545a78064_mirnaseq_gdc_realn.bam 305366484 BAM harmonized CPTAC3 2e47f06e-082a-44c9-88b4-a7ee0a71a1ed a080ab8ff34220d85b0cba29ec852920 {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor"} -C3L-00766.RNA-Seq.chimeric.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.chimeric.gdc_realn.bam 67050574 BAM chimeric harmonized CPTAC3 de104199-26d3-4ba1-85fe-fe31ca2522cd 477de5ca2dbfd9f3a0cf240e9f9f83d3 {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor"} -C3L-00766.RNA-Seq.genomic.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.genomic.gdc_realn.bam 9701576714 BAM genomic harmonized CPTAC3 0c37a3ce-3851-4636-acfd-55357f1514d1 23ffb65ccedcefa3c20af6fa201ed9bb {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor"} -C3L-00766.RNA-Seq.S13_L008_R1.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R1_001.fastq.gz 4618158717 FASTQ S13_L008_R1 unaligned CPTAC3 440a7243-ea6e-46a5-99ac-cc1602d1d0de 1cd3bc6d5f805cc8fb484b58b5a713ee {"aliquot_tag": "ALQ_98c5dd97", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00766.RNA-Seq.S13_L008_R2.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R2_001.fastq.gz 5124550137 FASTQ S13_L008_R2 unaligned CPTAC3 698425b6-73ab-4bb5-a2c1-6e1cdeb6b719 7cc4270b6e1c60fd9df0ac0f858d1bb3 {"aliquot_tag": "ALQ_98c5dd97", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00766.RNA-Seq.transcriptome.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.transcriptome.gdc_realn.bam 12007593326 BAM transcriptome harmonized CPTAC3 49ac173f-8bfd-4362-a511-d1aabaf40b98 17c111b1b5c55c3a9cde346a7064faa5 {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor"} -C3L-00766.WGS.N C3L-00766 CCRCC WGS blood_normal CPT0029430002 CPT0029430002.WholeGenome.RP-1303.bam 68238309334 BAM aligned CPTAC3 d1ac49e7-e991-45a4-9c54-29efd43be065 f685b7185a9c765c12279c6785eddf46 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal"} -C3L-00766.WGS.N.hg38 C3L-00766 CCRCC WGS blood_normal CPT0029430002 83ea1247-e8c1-4bfc-a980-ff6559c85880_gdc_realn.bam 98180727025 BAM harmonized CPTAC3 1803562e-4a8e-44e0-a4f7-dba1b397b9bd 161652ca2dc1c697e880fc0596246bf4 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal"} -C3L-00766.WGS.T C3L-00766 CCRCC WGS tumor CPT0025170009 CPT0025170009.WholeGenome.RP-1303.bam 59276547171 BAM aligned CPTAC3 d7ec8ce7-5cd8-4e13-b89f-02f2cdb700f4 a328e1634965147b8c75411d21503a15 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor"} -C3L-00766.WGS.T.hg38 C3L-00766 CCRCC WGS tumor CPT0025170009 00e60ad6-4363-47ae-9f34-5a1f52af5ee6_gdc_realn.bam 87514577592 BAM harmonized CPTAC3 2a317b42-9ee9-49cc-a580-757ea5ed7a81 8401adb446c28444f95cc1aeda2a0c12 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor"} -C3L-00766.WXS.N C3L-00766 CCRCC WXS blood_normal CPT0029430002 CPT0029430002.WholeExome.RP-1303.bam 29143037375 BAM aligned CPTAC3 1dd08fef-e2e1-41d5-a020-25232a708b00 98d2c47a743ceaf04cb36d87f7789201 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal"} -C3L-00766.WXS.N.hg38 C3L-00766 CCRCC WXS blood_normal CPT0029430002 83ea1247-e8c1-4bfc-a980-ff6559c85880_gdc_realn.bam 40060374962 BAM harmonized CPTAC3 1a157182-31af-4eaf-a020-5c05d9db0845 7a56a105a7b24df85006add044d64327 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal"} -C3L-00766.WXS.T C3L-00766 CCRCC WXS tumor CPT0025170009 CPT0025170009.WholeExome.RP-1303.bam 25079821840 BAM aligned CPTAC3 5eda6402-884b-4931-bba4-3485e3bb9c7b 47ff398d78e53e6700d45dbbc2c02953 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor"} -C3L-00766.WXS.T.hg38 C3L-00766 CCRCC WXS tumor CPT0025170009 00e60ad6-4363-47ae-9f34-5a1f52af5ee6_gdc_realn.bam 33777289548 BAM harmonized CPTAC3 718c13b4-3d2c-4c14-b26b-e296227d7794 5250027ebfa2103507d2e2e79efa3392 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor"} -C3L-00767.ADD_c60f079.miRNA-Seq.S9_L001_R1.T C3L-00767 UCEC miRNA-Seq tumor CPT0026430006 180924_UNC31-K00269_0154_AHWTMLBBXX_CGTACG_S9_L001_R1_001.unaln.bam 214810997 BAM S9_L001_R1 unaligned CPTAC3 1bd8a552-1204-4e63-9c90-6667da726b21 7bb11989f43ee9d491e7b9b992095df6 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00767.ADD_c60f079.miRNA-Seq.T.hg38 C3L-00767 UCEC miRNA-Seq tumor CPT0026430006 0ebbce9f-8bc0-4f19-8b09-642abd559498_mirnaseq_gdc_realn.bam 244027324 BAM harmonized CPTAC3 447c423d-bcb4-4bf9-bf07-44fdb98d3564 45c0d8b4b428618ed7526ac455b8a29f {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3L-00767.ADD_c60f079.RNA-Seq.chimeric.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.chimeric.gdc_realn.bam 75486033 BAM chimeric harmonized CPTAC3 45154a1d-82d6-4285-b704-dd904f5cbbb2 e49329b8133f60d5b58802087b783428 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3L-00767.ADD_c60f079.RNA-Seq.genomic.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.genomic.gdc_realn.bam 9707034661 BAM genomic harmonized CPTAC3 e0579e3f-adcb-4f52-a6ba-89303f2f2bd2 63f21c1ff247f5237f82b2e1cdfa2519 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3L-00767.ADD_c60f079.RNA-Seq.S15_L004_R1.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R1_001.fastq.gz 4544135726 FASTQ S15_L004_R1 unaligned CPTAC3 398b396a-17ba-4210-a645-a0f049b6e01e f9a76468eaf9fc4d899e61790c5f33a4 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00767.ADD_c60f079.RNA-Seq.S15_L004_R2.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R2_001.fastq.gz 5025015263 FASTQ S15_L004_R2 unaligned CPTAC3 b906f8b8-457b-4eed-bcc9-e9fb458b8bfa f0011b33a0727cc97b7c7ae3ee1524a3 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00767.ADD_c60f079.RNA-Seq.transcriptome.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.transcriptome.gdc_realn.bam 10921961536 BAM transcriptome harmonized CPTAC3 bb933eb5-68d0-4011-8056-d8b84c6e6adf d53e6b9dca6be1469fe2409ae1571fff {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3L-00767.MethArray.Green.T C3L-00767 UCEC Methylation_Array tumor CPT0026430009 202184900148_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a9416b12-9b20-49ee-b8d0-dc2e5344a34a 99c3e0302c956615da71f3e2519f45b6 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor"} -C3L-00767.MethArray.Red.T C3L-00767 UCEC Methylation_Array tumor CPT0026430009 202184900148_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 a33dbc52-6727-4876-b5ca-6870e9429740 43c92e06568a994b0d030436bdc9e00c {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor"} -C3L-00767.RNA-Seq.chimeric.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.chimeric.gdc_realn.bam 394827161 BAM chimeric harmonized CPTAC3 fbd770e0-ac4e-4587-8427-020071f1a0d4 6a2e0d83d921f548a13496c21a867b72 {"aliquot_tag": "ALQ_1d44907a", "gdc_sample_type": "Primary Tumor"} -C3L-00767.RNA-Seq.genomic.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.genomic.gdc_realn.bam 19015397301 BAM genomic harmonized CPTAC3 b80a98cc-1bea-4ef5-9d18-020ababd0aac cb8acdb6976afba819f847af5c5150bd {"aliquot_tag": "ALQ_1d44907a", "gdc_sample_type": "Primary Tumor"} -C3L-00767.RNA-Seq.S14_R1.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R1_001.fastq.gz 12540854338 FASTQ S14_R1 unaligned CPTAC3 601208b3-7ac6-4498-823a-6f210bbcf1c3 b8a1bf2642243b41d045a11ae26b2071 {"aliquot_tag": "ALQ_1d44907a", "sample": "S14", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00767.RNA-Seq.S14_R2.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R2_001.fastq.gz 13069973825 FASTQ S14_R2 unaligned CPTAC3 58677cc5-5e2b-44d3-a7c4-14089345548a 5208ad73ed8c68c377395cd80cf56c88 {"aliquot_tag": "ALQ_1d44907a", "sample": "S14", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00767.RNA-Seq.transcriptome.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.transcriptome.gdc_realn.bam 11354200616 BAM transcriptome harmonized CPTAC3 c3e3e645-8713-48c9-93da-656c9467ad0a 38921c401c1bebef2dfcab3d2faaa551 {"aliquot_tag": "ALQ_1d44907a", "gdc_sample_type": "Primary Tumor"} -C3L-00767.WGS.N C3L-00767 UCEC WGS blood_normal CPT0026490002 CPT0026490002.WholeGenome.RP-1303.bam 62340321709 BAM aligned CPTAC3 ac0f0450-8a1b-4289-bddb-a9355d1930bf 56c8691ff162c5337f71d74475a540e6 {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00767.WGS.N.hg38 C3L-00767 UCEC WGS blood_normal CPT0026490002 7993ec03-5c3f-4f2a-920d-33dbf262d40a_gdc_realn.bam 89893607496 BAM harmonized CPTAC3 d859af69-ac8f-4a4a-a376-9a6af50c07f3 872ffd61ff2bb19f8bf9c3765d93b700 {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00767.WGS.T C3L-00767 UCEC WGS tumor CPT0026430009 CPT0026430009.WholeGenome.RP-1303.bam 61485896986 BAM aligned CPTAC3 4d067b52-b0b1-4b49-9d8e-e7af4777913b 54c0a47e8bcce16af3acb2ecb7f4d113 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor"} -C3L-00767.WGS.T.hg38 C3L-00767 UCEC WGS tumor CPT0026430009 bf2c19ca-4c02-444c-8137-65a17c479448_gdc_realn.bam 88747509309 BAM harmonized CPTAC3 87dc9106-3c23-4cd3-8a85-6992800a5673 923ade9f2b8fe757e93691aa5240bb83 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor"} -C3L-00767.WXS.N C3L-00767 UCEC WXS blood_normal CPT0026490002 CPT0026490002.WholeExome.RP-1303.bam 29769671644 BAM aligned CPTAC3 cb17fbf3-1a58-4f4e-99dc-247f6b9cf870 b6f453e295e03d3778174b181d578eec {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00767.WXS.N.hg38 C3L-00767 UCEC WXS blood_normal CPT0026490002 7993ec03-5c3f-4f2a-920d-33dbf262d40a_gdc_realn.bam 41003919583 BAM harmonized CPTAC3 07e62483-1397-4efc-be62-9009f7568709 5c62b34411f47a9b43cfbbd4355f1730 {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-00767.WXS.T C3L-00767 UCEC WXS tumor CPT0026430009 CPT0026430009.WholeExome.RP-1303.bam 26347373805 BAM aligned CPTAC3 388eee21-fd29-4fce-995a-a5aff2058aed c5c23ba7f11e42148e7cfacadfa0a6a9 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor"} -C3L-00767.WXS.T.hg38 C3L-00767 UCEC WXS tumor CPT0026430009 bf2c19ca-4c02-444c-8137-65a17c479448_gdc_realn.bam 35926223132 BAM harmonized CPTAC3 30f59c0f-6d2c-4513-beb7-0d9792fa3edb 8b46cb93806987036df97bb8e2819ddd {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor"} -C3L-00769.MethArray.Green.T C3L-00769 UCEC Methylation_Array tumor CPT0026530009 202178770079_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 9317eab7-524c-4303-b9a5-6768489dabda a6f84f64ac53af84be4fcdaa3e5f79db {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor"} -C3L-00769.MethArray.Red.T C3L-00769 UCEC Methylation_Array tumor CPT0026530009 202178770079_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 081bab2c-f927-4d2a-81e4-a4b7c31ff60f 807a7c674aae95dc2794dd0be12beb7a {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor"} -C3L-00769.miRNA-Seq.S8_L001_R1.T C3L-00769 UCEC miRNA-Seq tumor CPT0026530006 180924_UNC31-K00269_0154_AHWTMLBBXX_GAGTGG_S8_L001_R1_001.unaln.bam 216444782 BAM S8_L001_R1 unaligned CPTAC3 e1acca7e-e5ed-4af2-a65b-992f575aee8c 29ab4d5d9db36a681b7343574927e4d1 {"aliquot_tag": "ALQ_c73c23dc", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00769.miRNA-Seq.T.hg38 C3L-00769 UCEC miRNA-Seq tumor CPT0026530006 5bfa1a75-40ed-44b5-bf39-eb1ba3dc4ba7_mirnaseq_gdc_realn.bam 237465745 BAM harmonized CPTAC3 0940f627-2764-47c3-a4c1-d169ab9ebb40 5970490273e998e7d146e90237a69e83 {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.chimeric.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.chimeric.gdc_realn.bam 77376353 BAM chimeric harmonized CPTAC3 01dc5eae-43e9-4388-9339-b59ec85885a6 24d85e902c063233d12604b98f600d7c {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.chimeric.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.chimeric.gdc_realn.bam 323928308 BAM chimeric harmonized CPTAC3 2d9986ac-a556-479e-9bbb-7045bbcac19b c5a97a20a82881d0c9144ed658a24b56 {"aliquot_tag": "ALQ_d61843df", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.genomic.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.genomic.gdc_realn.bam 9433071307 BAM genomic harmonized CPTAC3 6bfd49fd-0d01-438a-9ff7-16b4096e80cf 4095614d60da97bc65a9bea6a0b149cf {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.genomic.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.genomic.gdc_realn.bam 12926231069 BAM genomic harmonized CPTAC3 dcce8499-d25c-4d11-8d69-016b63054533 303fafb132b57d99f567dd9d8486d0b9 {"aliquot_tag": "ALQ_d61843df", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.S14_L004_R1.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4643837806 FASTQ S14_L004_R1 unaligned CPTAC3 b279cd43-c02c-42f0-8c35-aaf3a15d1d3d 322fd12b424c284c802fad37f8a6598f {"aliquot_tag": "ALQ_c73c23dc", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.S14_L004_R2.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 5109670711 FASTQ S14_L004_R2 unaligned CPTAC3 89545c45-58a9-44f7-a03e-f0c0cf2a901f 1e53b36b0310c85debee24514f152407 {"aliquot_tag": "ALQ_c73c23dc", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.S66_R1.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R1_001.fastq.gz 8184559425 FASTQ S66_R1 unaligned CPTAC3 7e487c86-29a5-49b1-b338-55e7cd72a05c 7bece81738a9255579effa6b1363e75d {"aliquot_tag": "ALQ_d61843df", "sample": "S66", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.S66_R2.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R2_001.fastq.gz 8474620961 FASTQ S66_R2 unaligned CPTAC3 9fec309f-a1cf-4f7c-a7ea-56ab202f59c8 d07372a00c2aaca4e6ac43dd9c40af06 {"aliquot_tag": "ALQ_d61843df", "sample": "S66", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.transcriptome.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.transcriptome.gdc_realn.bam 12940117831 BAM transcriptome harmonized CPTAC3 bd49e87f-dd54-4fe4-a22a-ebc4552bc3d8 4e93eadd30747b8496fee3cd7b457ed9 {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor"} -C3L-00769.RNA-Seq.transcriptome.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.transcriptome.gdc_realn.bam 6697533387 BAM transcriptome harmonized CPTAC3 c5f858c8-b710-4918-bb85-2f14bd6b7f3d 2fbadbb76a77708f4e2527812f9b8d06 {"aliquot_tag": "ALQ_d61843df", "gdc_sample_type": "Primary Tumor"} -C3L-00769.WGS.N C3L-00769 UCEC WGS blood_normal CPT0026590002 CPT0026590002.WholeGenome.RP-1303.bam 68636298310 BAM aligned CPTAC3 39ac855d-fd71-48d7-a2ca-21fe1b5c8b20 41adcffc4ee0863e80e3245b2fd5f5bb {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00769.WGS.N.hg38 C3L-00769 UCEC WGS blood_normal CPT0026590002 4f90dd58-4dc8-4338-95ae-ce993e9370e4_gdc_realn.bam 99025304511 BAM harmonized CPTAC3 3a884473-fe8a-45e8-ae2d-eaaeaae500da 38d41bb26ad359044a1ce6f964f18e00 {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00769.WGS.T C3L-00769 UCEC WGS tumor CPT0026530009 CPT0026530009.WholeGenome.RP-1303.bam 71018112728 BAM aligned CPTAC3 35ad67d5-eb77-40a1-b79b-b2d29a582f22 977461a151497a80090dca22c3cc62a1 {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor"} -C3L-00769.WGS.T.hg38 C3L-00769 UCEC WGS tumor CPT0026530009 a0c6d074-5bd3-4293-a7f7-fc4366b926a4_gdc_realn.bam 104392725033 BAM harmonized CPTAC3 d8f8126d-326b-43ee-b830-62377996a4d3 9a2bb6eb8656dc8e853eba936dbd7389 {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor"} -C3L-00769.WXS.N C3L-00769 UCEC WXS blood_normal CPT0026590002 CPT0026590002.WholeExome.RP-1303.bam 29849468446 BAM aligned CPTAC3 2d3390de-60ff-4dc9-8c32-5bad6614de1f 07bd739e444c21622bc7123608d638eb {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00769.WXS.N.hg38 C3L-00769 UCEC WXS blood_normal CPT0026590002 4f90dd58-4dc8-4338-95ae-ce993e9370e4_gdc_realn.bam 40541407730 BAM harmonized CPTAC3 72f9d84b-db67-4e8a-89ce-b5e9ce97c214 87dd7bd6fed06bc52a36ef40f8ead516 {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal"} -C3L-00769.WXS.T C3L-00769 UCEC WXS tumor CPT0026530009 CPT0026530009.WholeExome.RP-1303.bam 22424633286 BAM aligned CPTAC3 718e2460-1419-4f91-81bf-1f5952dc75a4 6fe3fc9d4f9961542d98184873502dde {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor"} -C3L-00769.WXS.T.hg38 C3L-00769 UCEC WXS tumor CPT0026530009 a0c6d074-5bd3-4293-a7f7-fc4366b926a4_gdc_realn.bam 30684823149 BAM harmonized CPTAC3 fe1bab24-7e25-4cf8-ac7e-09ee67eedaa6 00b7274d4b0b98bff49e2b5c73d207f6 {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor"} -C3L-00770.MethArray.Green.T C3L-00770 UCEC Methylation_Array tumor CPT0026650009 202176290047_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3adeb3c3-5b76-4ba6-9d19-c946107725fd 82a6b6a161250a836c919668f29ec5ed {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor"} -C3L-00770.MethArray.Red.T C3L-00770 UCEC Methylation_Array tumor CPT0026650009 202176290047_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 425ecafd-f6bc-4f29-a5a6-397432b57d2c d42d69a25e717dde9e9d9e530effb283 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor"} -C3L-00770.miRNA-Seq.S7_L001_R1.T C3L-00770 UCEC miRNA-Seq tumor CPT0026650006 180924_UNC31-K00269_0154_AHWTMLBBXX_GGTAGC_S7_L001_R1_001.unaln.bam 177436684 BAM S7_L001_R1 unaligned CPTAC3 8c69637c-46f1-4ef6-ab98-1a0aa42d28d3 d28b5146685c5bb265271f2ad0f673f4 {"aliquot_tag": "ALQ_cee8a4d2", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00770.miRNA-Seq.T.hg38 C3L-00770 UCEC miRNA-Seq tumor CPT0026650006 9b7b6856-9ba1-461c-b8b5-a9aa8815e9ed_mirnaseq_gdc_realn.bam 193518630 BAM harmonized CPTAC3 c13f62b3-51d5-4c6c-a2d0-1224f34ab987 ba3e985aa3b8391571f507d65534d156 {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.chimeric.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.chimeric.gdc_realn.bam 98350728 BAM chimeric harmonized CPTAC3 96c33386-a857-4bd5-ab24-f264d1c29f71 c15fed709c57de8721d0c0f1686be2bc {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.chimeric.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.chimeric.gdc_realn.bam 259951023 BAM chimeric harmonized CPTAC3 9545c789-0ae7-45ab-b0da-d297207571d2 af63c89b3343ede1066f341c29a6e9e5 {"aliquot_tag": "ALQ_2a4c6211", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.genomic.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.genomic.gdc_realn.bam 6726406648 BAM genomic harmonized CPTAC3 da2d5579-ad0a-477d-a7d3-ebbafb7aef53 ca85ee4091530a89ae0dfe341f1d63ba {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.genomic.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.genomic.gdc_realn.bam 13725926085 BAM genomic harmonized CPTAC3 0ab620f5-5d54-4f14-9714-23df0fa84f16 7e101cd17a553b508cdbd2661849f0ac {"aliquot_tag": "ALQ_2a4c6211", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.S11_L003_R1.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R1_001.fastq.gz 3210855581 FASTQ S11_L003_R1 unaligned CPTAC3 866a0af4-d611-4690-89f7-a6bd28807494 2b0d8c2841c710d214b480f4e783dc0d {"aliquot_tag": "ALQ_cee8a4d2", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.S11_L003_R2.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R2_001.fastq.gz 3533356604 FASTQ S11_L003_R2 unaligned CPTAC3 f5bbe1ad-856b-4c71-bd70-e538c2b1898e 054d58bbb400b02266092663d9ce74e0 {"aliquot_tag": "ALQ_cee8a4d2", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.S26_R1.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R1_001.fastq.gz 8514648651 FASTQ S26_R1 unaligned CPTAC3 45945e5a-1afb-495d-8656-0b7775a335f8 768353d108bb130daa8269c1ca9135b2 {"aliquot_tag": "ALQ_2a4c6211", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.S26_R2.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R2_001.fastq.gz 8870217673 FASTQ S26_R2 unaligned CPTAC3 8531e973-c902-4900-98f4-bed7378c7f2d feed2cc7f725f8a5929f4e0a53f8a0eb {"aliquot_tag": "ALQ_2a4c6211", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.transcriptome.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.transcriptome.gdc_realn.bam 8717596652 BAM transcriptome harmonized CPTAC3 08706e07-c04d-4884-abf3-d49e065dbd38 980d30fd7c7b62205b1c08e74e0edcf0 {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor"} -C3L-00770.RNA-Seq.transcriptome.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.transcriptome.gdc_realn.bam 8139116770 BAM transcriptome harmonized CPTAC3 5f29f19d-eafb-4031-936e-be11ecd972ba ae1400064405b24e36b960573e69ad4d {"aliquot_tag": "ALQ_2a4c6211", "gdc_sample_type": "Primary Tumor"} -C3L-00770.WGS.N C3L-00770 UCEC WGS blood_normal CPT0026710002 CPT0026710002.WholeGenome.RP-1303.bam 65695085940 BAM aligned CPTAC3 d55d3120-8759-48e2-81e6-b86614d51a92 6d8853743b6ee3dbaec8d2764c6bfee7 {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00770.WGS.N.hg38 C3L-00770 UCEC WGS blood_normal CPT0026710002 330d5168-11d4-4bd3-924c-00a48a2e77f6_gdc_realn.bam 95365597650 BAM harmonized CPTAC3 ee622934-1e17-44f8-8d8d-41011cc7e50e da43568284f052e6caa6411875e4fe80 {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00770.WGS.T C3L-00770 UCEC WGS tumor CPT0026650009 CPT0026650009.WholeGenome.RP-1303.bam 63965991515 BAM aligned CPTAC3 abb63dbc-2305-4844-88bc-3cd1a40551c7 996d3d12d383f23c9380c13c67b47d11 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor"} -C3L-00770.WGS.T.hg38 C3L-00770 UCEC WGS tumor CPT0026650009 9c061602-847f-499d-bc0d-1761c1964373_gdc_realn.bam 93839041742 BAM harmonized CPTAC3 f9d8547d-be92-461a-b9ce-30c2deb01239 64dcf95546c2b6b5b896178661f1ea62 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor"} -C3L-00770.WXS.N C3L-00770 UCEC WXS blood_normal CPT0026710002 CPT0026710002.WholeExome.RP-1303.bam 25397251267 BAM aligned CPTAC3 7d1c9a83-b71e-41e4-b9bf-2597f5cb7c3c 5b8e41d702ee655568e09381e3810a7a {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00770.WXS.N.hg38 C3L-00770 UCEC WXS blood_normal CPT0026710002 330d5168-11d4-4bd3-924c-00a48a2e77f6_gdc_realn.bam 35106407511 BAM harmonized CPTAC3 44017bf5-1244-4370-a7df-d8d40c18841c 2372ea9addc8afe5ab40da8d028225f2 {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00770.WXS.T C3L-00770 UCEC WXS tumor CPT0026650009 CPT0026650009.WholeExome.RP-1303.bam 26987625447 BAM aligned CPTAC3 78dba76c-b8e6-448d-9176-2d289ccd5b6a 9ff6a17bc56cac2f78a34fd55ec975e8 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor"} -C3L-00770.WXS.T.hg38 C3L-00770 UCEC WXS tumor CPT0026650009 9c061602-847f-499d-bc0d-1761c1964373_gdc_realn.bam 37064864893 BAM harmonized CPTAC3 8db62179-1b8d-4ed0-b1eb-e7145b9db850 b82011f931c96823e4fc19b9cf3fe12b {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor"} -C3L-00771.MethArray.Green.T C3L-00771 UCEC Methylation_Array tumor CPT0026770009 202176300111_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a5cd2f59-69f7-401d-8aea-2f9c82dc9a39 310edd6dd053300a7af56e91fc396582 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor"} -C3L-00771.MethArray.Red.T C3L-00771 UCEC Methylation_Array tumor CPT0026770009 202176300111_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 83d578da-c08c-4205-b455-d63b9744a4e7 8f8642c69b5c2c3275ac2cb7bf56e17f {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor"} -C3L-00771.miRNA-Seq.S6_L001_R1.T C3L-00771 UCEC miRNA-Seq tumor CPT0026770006 180924_UNC31-K00269_0154_AHWTMLBBXX_ACTGAT_S6_L001_R1_001.unaln.bam 432174685 BAM S6_L001_R1 unaligned CPTAC3 76022649-a402-48a3-99e1-00fa16269af7 dbe3c86d0c8785a113b5495518f1f0be {"aliquot_tag": "ALQ_7f742417", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00771.miRNA-Seq.T.hg38 C3L-00771 UCEC miRNA-Seq tumor CPT0026770006 4198cf25-ebbc-4c0d-85b8-0a80244da6d4_mirnaseq_gdc_realn.bam 475189502 BAM harmonized CPTAC3 ebf8fb51-88d0-4930-a4f1-115c4c183918 d89157175fc0c6a719dcc63b849fa128 {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.chimeric.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.chimeric.gdc_realn.bam 88741331 BAM chimeric harmonized CPTAC3 d870b4dc-2fc9-4872-b20f-503b04afce34 d365c85faa7f7ae4e39cc74091b4138b {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.chimeric.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.chimeric.gdc_realn.bam 146132743 BAM chimeric harmonized CPTAC3 3b4cd5cd-6bb7-4627-a9bf-3db67505a309 80806bfe68607e30336059933ad5802f {"aliquot_tag": "ALQ_5e200fd5", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.genomic.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.genomic.gdc_realn.bam 9944518528 BAM genomic harmonized CPTAC3 454ff995-5066-45ea-a081-4cf8d412d854 64f8a73cee3908b479b7832be6cab379 {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.genomic.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.genomic.gdc_realn.bam 7783018799 BAM genomic harmonized CPTAC3 d1a3f6d5-f277-44d3-b594-96d43d376f26 b84c8db45a0f62d70533cd1454f02dab {"aliquot_tag": "ALQ_5e200fd5", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.S10_L003_R1.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4604348415 FASTQ S10_L003_R1 unaligned CPTAC3 a6fab0ab-ce4b-44cb-bf38-b9db4caa2e70 965d78f080bfd9143a57c00b68165303 {"aliquot_tag": "ALQ_7f742417", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.S10_L003_R2.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 5028202029 FASTQ S10_L003_R2 unaligned CPTAC3 8a6ab525-f78c-4814-89f3-4b487a4a847c 1d547bb9642d1b46c48ab12c8231ffeb {"aliquot_tag": "ALQ_7f742417", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.S30_R1.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R1_001.fastq.gz 5048975062 FASTQ S30_R1 unaligned CPTAC3 f3d56bee-b335-4134-9011-cde4ad2af5a4 bb1e7d3a70c09edc5c47934e384ac2a8 {"aliquot_tag": "ALQ_5e200fd5", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.S30_R2.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R2_001.fastq.gz 5265782827 FASTQ S30_R2 unaligned CPTAC3 7c4721c6-6937-45a9-8adc-48940035dfd7 c79856c213517e63623ae39f28241867 {"aliquot_tag": "ALQ_5e200fd5", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.transcriptome.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.transcriptome.gdc_realn.bam 11630073946 BAM transcriptome harmonized CPTAC3 60cc01c3-f236-47a4-b372-edc914c7f544 0ee302e37a6036cfeed85a555a5bfaf6 {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor"} -C3L-00771.RNA-Seq.transcriptome.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.transcriptome.gdc_realn.bam 6306927230 BAM transcriptome harmonized CPTAC3 665262e9-7d16-4f16-8057-87494c351150 b7de8f8669f3f68a62260a8512d44267 {"aliquot_tag": "ALQ_5e200fd5", "gdc_sample_type": "Primary Tumor"} -C3L-00771.WGS.N C3L-00771 UCEC WGS blood_normal CPT0026830002 CPT0026830002.WholeGenome.RP-1303.bam 61742891656 BAM aligned CPTAC3 a40b90b2-42f6-433b-8481-4d51c7b89547 de385d5717220e2f18debc4279732c5c {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00771.WGS.N.hg38 C3L-00771 UCEC WGS blood_normal CPT0026830002 2bbab210-8789-4844-9de7-509231db0e6c_gdc_realn.bam 89972848085 BAM harmonized CPTAC3 4b0f79f5-6bce-4af8-a6eb-a52a896cfe48 cb5b9293fe08b024f785eecc991f7c70 {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00771.WGS.T C3L-00771 UCEC WGS tumor CPT0026770009 CPT0026770009.WholeGenome.RP-1303.bam 63721913030 BAM aligned CPTAC3 f40669d0-1780-47a6-a351-c7cdf1b0c837 ebfe62fddc9cd2091512af90ff5d3b90 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor"} -C3L-00771.WGS.T.hg38 C3L-00771 UCEC WGS tumor CPT0026770009 506829d5-3821-445a-b4c7-083fb483e8dc_gdc_realn.bam 93865585666 BAM harmonized CPTAC3 0459b7a4-b983-423b-bdf6-f7d93f8f5cba b03dae708c888259d5fa9d9c78d73f29 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor"} -C3L-00771.WXS.N C3L-00771 UCEC WXS blood_normal CPT0026830002 CPT0026830002.WholeExome.RP-1303.bam 23414811323 BAM aligned CPTAC3 a4741ac9-5aa3-4393-9f37-17775cc03183 765b17f15c047b4a41436c2bc294def2 {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00771.WXS.N.hg38 C3L-00771 UCEC WXS blood_normal CPT0026830002 2bbab210-8789-4844-9de7-509231db0e6c_gdc_realn.bam 31864285185 BAM harmonized CPTAC3 e757f535-dfb5-452d-9796-87c50fa8a73b d03eefe65ae1cf5fb95d765a14c618a6 {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00771.WXS.T C3L-00771 UCEC WXS tumor CPT0026770009 CPT0026770009.WholeExome.RP-1303.bam 21505946970 BAM aligned CPTAC3 5672e64e-b7e9-43fd-9929-d14b1fdc3c40 67d4dba75a28449b425f1f7751d32997 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor"} -C3L-00771.WXS.T.hg38 C3L-00771 UCEC WXS tumor CPT0026770009 506829d5-3821-445a-b4c7-083fb483e8dc_gdc_realn.bam 29286181648 BAM harmonized CPTAC3 319b9314-8f00-49f7-899e-727a6b5fafd4 bc38fef7de1f41638f4ac26014800c05 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor"} -C3L-00780.MethArray.Green.T C3L-00780 UCEC Methylation_Array tumor CPT0070330010 202178770111_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 72495009-5514-40d5-bc3e-32347ac3065e 5babdb0b20fa6912139a84aa9dc77e40 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor"} -C3L-00780.MethArray.Red.T C3L-00780 UCEC Methylation_Array tumor CPT0070330010 202178770111_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 42dada8a-2498-4b15-9ba4-2a8a2ee338bc df38b7d98ffef27fbd2061bc4100f2d1 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor"} -C3L-00780.miRNA-Seq.S32_L007_R1.T C3L-00780 UCEC miRNA-Seq tumor CPT0070330007 181012_UNC32-K00270_0124_AH223CBBXY_GGCTAC_S32_L007_R1_001.unaln.bam 168848746 BAM S32_L007_R1 unaligned CPTAC3 865180b3-9f65-4d28-8abd-15bdc3fe3dd3 05d2a854c5c28d7d77dd3fa8d67c0e24 {"aliquot_tag": "ALQ_4d52cb09", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00780.miRNA-Seq.T.hg38 C3L-00780 UCEC miRNA-Seq tumor CPT0070330007 dfbaf280-c587-45b8-ba12-a6ca72623a22_mirnaseq_gdc_realn.bam 188536458 BAM harmonized CPTAC3 5689272f-448d-41fe-b1a9-68177ffd4a66 42014c0764bf8f4453f9185c5396b118 {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor"} -C3L-00780.RNA-Seq.chimeric.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.chimeric.gdc_realn.bam 53256049 BAM chimeric harmonized CPTAC3 527afb00-8ccb-4bf9-bd2a-7c56d381f14b c7c37121f19da539b00937eacbb2fdc2 {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor"} -C3L-00780.RNA-Seq.genomic.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.genomic.gdc_realn.bam 8650767163 BAM genomic harmonized CPTAC3 7a7a291b-7a43-4e4e-a9cf-a9f3b6a5c39d 29386b5c59ddd28783321d23df6470be {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor"} -C3L-00780.RNA-Seq.S4_L006_R1.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R1_001.fastq.gz 4149226403 FASTQ S4_L006_R1 unaligned CPTAC3 433f4fc5-843a-4a1b-b993-dd413244a03f b61cde914849aace27fc2f8722612662 {"aliquot_tag": "ALQ_4d52cb09", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00780.RNA-Seq.S4_L006_R2.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4444671341 FASTQ S4_L006_R2 unaligned CPTAC3 0ad8238f-6db6-42c0-ae96-4d7a5f0e7e7b 278093ac8c4d98aa4e7641beed7d9b7d {"aliquot_tag": "ALQ_4d52cb09", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00780.RNA-Seq.transcriptome.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.transcriptome.gdc_realn.bam 10943566038 BAM transcriptome harmonized CPTAC3 8b4afef4-f65f-4553-b635-abccc540b042 ac2a5272c64565909eaabcf107dd88a9 {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor"} -C3L-00780.WGS.N C3L-00780 UCEC WGS blood_normal CPT0071010002 CPT0071010002.WholeGenome.RP-1303.bam 74194572417 BAM aligned CPTAC3 21301d06-4d64-4205-9ad8-613998b0e5b7 7143defc8b08a9ff4fc4a21821bf19d7 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00780.WGS.N.hg38 C3L-00780 UCEC WGS blood_normal CPT0071010002 5b8ab142-f4da-4643-8c68-db13cfd072b2_gdc_realn.bam 110619360206 BAM harmonized CPTAC3 30d98464-2799-4a96-ac54-29b14e1512cc 53e7c9991a6a583bf6448c8273ced620 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00780.WGS.T C3L-00780 UCEC WGS tumor CPT0070330010 CPT0070330010.WholeGenome.RP-1303.bam 89473105086 BAM aligned CPTAC3 8d3ff099-3d93-421a-a156-f8b3d14e59db 5d034ebcc4f435863057ebf8f6759da6 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor"} -C3L-00780.WGS.T.hg38 C3L-00780 UCEC WGS tumor CPT0070330010 112790c0-190c-469d-9a8f-27abdcd1bea6_gdc_realn.bam 139364151558 BAM harmonized CPTAC3 8396af38-2c13-409d-a101-ea1a579fc1e7 ecafc91c4ae0f5fbb149e61eda3c579a {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor"} -C3L-00780.WXS.N C3L-00780 UCEC WXS blood_normal CPT0071010002 CPT0071010002.WholeExome.RP-1303.bam 37646949411 BAM aligned CPTAC3 c43591ad-8ea4-48dc-a993-19a339c73769 cea286a2f64b79a568e3b06fc5029f39 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00780.WXS.N.hg38 C3L-00780 UCEC WXS blood_normal CPT0071010002 5b8ab142-f4da-4643-8c68-db13cfd072b2_gdc_realn.bam 51120636409 BAM harmonized CPTAC3 c715d91e-8c73-4dfb-8bc8-7b40b85a66c3 d6311e13b52698d6014d23fff8c3be26 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00780.WXS.T C3L-00780 UCEC WXS tumor CPT0070330010 CPT0070330010.WholeExome.RP-1303.bam 23482556781 BAM aligned CPTAC3 14bde12d-beb9-43d7-be78-44127b3e34f8 ed8d9fe2316fe3826a060d8698a42adf {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor"} -C3L-00780.WXS.T.hg38 C3L-00780 UCEC WXS tumor CPT0070330010 112790c0-190c-469d-9a8f-27abdcd1bea6_gdc_realn.bam 32744912561 BAM harmonized CPTAC3 6ac5dcc3-1579-4f8f-9974-8183e970c433 1e69bace9d35af952147dedec865ed88 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor"} -C3L-00781.ANN_1ddb469c.WGS.N C3L-00781 UCEC WGS blood_normal CPT0071030002 CPT0071030002.WholeGenome.RP-1303.bam 76522999929 BAM aligned CPTAC3 327fb993-6554-45a4-b193-65d43fb3c42b d8d4ce4472f11aedcf72cbe65bda3e09 {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3L-00781.ANN_1ddb469c.WGS.N.hg38 C3L-00781 UCEC WGS blood_normal CPT0071030002 f66e9c98-6bf9-401d-908e-6647373ab6ec_gdc_realn.bam 114863684048 BAM harmonized CPTAC3 a0b19c7e-733f-460c-969d-2e6954549afb 138fea9a86f7a09a7d0818998c45ef0e {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3L-00781.ANN_1ddb469c.WXS.N C3L-00781 UCEC WXS blood_normal CPT0071030002 CPT0071030002.WholeExome.RP-1303.bam 35606198342 BAM aligned CPTAC3 c0d845c2-393e-4b9e-b34a-4e3b1bb166a3 87f6e19d503bfc8445c8fbbf32cca879 {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3L-00781.ANN_1ddb469c.WXS.N.hg38 C3L-00781 UCEC WXS blood_normal CPT0071030002 f66e9c98-6bf9-401d-908e-6647373ab6ec_gdc_realn.bam 49744809841 BAM harmonized CPTAC3 337eceaf-f9ad-4aca-8ba6-501faf696188 95ca0fe960a07000aaf65d2f4ea3c3ac {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3L-00781.ANN_a956badb.MethArray.Green.T C3L-00781 UCEC Methylation_Array tumor CPT0070260009 202176290047_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 290a9e3a-67ab-4851-a507-94570aa3439c bac3e6a864770902817d1e10216a89d3 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00781.ANN_a956badb.MethArray.Red.T C3L-00781 UCEC Methylation_Array tumor CPT0070260009 202176290047_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 efa8dd50-9837-49e3-b6b7-d9034df3e4d8 6061482db63f53c7240b88d965a29ac6 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00781.ANN_a956badb.WGS.T C3L-00781 UCEC WGS tumor CPT0070260009 CPT0070260009.WholeGenome.RP-1303.bam 61713544130 BAM aligned CPTAC3 cfbec75e-6ba8-4141-8613-097815a13b49 e08bcaf607f5c15c4f2e535c068c05e0 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00781.ANN_a956badb.WGS.T.hg38 C3L-00781 UCEC WGS tumor CPT0070260009 10716ab4-7a85-4ad5-a1e0-ff7e1339aa0a_gdc_realn.bam 92149718911 BAM harmonized CPTAC3 c118fa04-a798-4523-b02f-4f292c61f47c 4954cfebbd8b817346d9fca56236cb88 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00781.ANN_a956badb.WXS.T C3L-00781 UCEC WXS tumor CPT0070260009 CPT0070260009.WholeExome.RP-1303.bam 30859526265 BAM aligned CPTAC3 3aafa910-9eeb-40ce-8373-8188414d1c9f 401abe17effc62381695e6c55d9b43a8 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00781.ANN_a956badb.WXS.T.hg38 C3L-00781 UCEC WXS tumor CPT0070260009 10716ab4-7a85-4ad5-a1e0-ff7e1339aa0a_gdc_realn.bam 41882383613 BAM harmonized CPTAC3 44dc38c6-1db6-4fe2-9a78-154b71409bbd e246dd6f27d7abc6f038b174d37d83cb {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-00781.miRNA-Seq.S14_L001_R1.T C3L-00781 UCEC miRNA-Seq tumor CPT0070260006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L001_R1_001.unaln.bam 212368435 BAM S14_L001_R1 unaligned CPTAC3 9b016aeb-1877-4ca3-a4ef-13453361ce14 73410e463b6adff27b41f4db9a103c37 {"aliquot_tag": "ALQ_39e9a74a", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00781.miRNA-Seq.T.hg38 C3L-00781 UCEC miRNA-Seq tumor CPT0070260006 16c70fb3-9961-4d76-b7de-ddcab4904e92_mirnaseq_gdc_realn.bam 240387591 BAM harmonized CPTAC3 5a2e27da-e780-473a-bfa3-a19d506257b5 bf5aaaa444700fdbc18e89152762acf5 {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.chimeric.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.chimeric.gdc_realn.bam 28195554 BAM chimeric harmonized CPTAC3 745e57a9-b464-416e-acc8-e9b34f788f1b 5c3d64d2fcfc001182522644a4ebefd2 {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.chimeric.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.chimeric.gdc_realn.bam 282982914 BAM chimeric harmonized CPTAC3 ba8b9c3e-9bd2-454f-9d70-2b773a32b18e 9009d997387208df09562c96ccd37011 {"aliquot_tag": "ALQ_ba880251", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.genomic.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.genomic.gdc_realn.bam 8243971457 BAM genomic harmonized CPTAC3 1d2a5ae7-0f95-45a7-b532-56db7f5ee886 cdb5d156ca9cc5389abc44c585b2215b {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.genomic.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.genomic.gdc_realn.bam 12648938511 BAM genomic harmonized CPTAC3 9f27f7a8-f073-43d3-b51d-8fde9a6bc352 39470d2afcc1c629936c427f6ec67e98 {"aliquot_tag": "ALQ_ba880251", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.S78_R1.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R1_001.fastq.gz 7512681971 FASTQ S78_R1 unaligned CPTAC3 f2fd1066-0297-4db5-ac1d-cfb1f112b621 1dec72c0ba58db0fa222dcdc96728fac {"aliquot_tag": "ALQ_ba880251", "sample": "S78", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.S78_R2.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R2_001.fastq.gz 7669099669 FASTQ S78_R2 unaligned CPTAC3 f85377c2-8c07-46f7-aa32-f185e85b2027 1f606dea998b03b79b4a97c4742c18c9 {"aliquot_tag": "ALQ_ba880251", "sample": "S78", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.S9_L003_R1.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R1_001.fastq.gz 3804671211 FASTQ S9_L003_R1 unaligned CPTAC3 0de24a9c-ebaa-45df-8405-9c753dce28b2 471bfdb06e9b5b3f5c9cf3c166134ce3 {"aliquot_tag": "ALQ_39e9a74a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.S9_L003_R2.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R2_001.fastq.gz 4098934685 FASTQ S9_L003_R2 unaligned CPTAC3 8fe73704-391c-40df-b4ed-7ddab091670b db856df64751866496d961064ac5bd6b {"aliquot_tag": "ALQ_39e9a74a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.transcriptome.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.transcriptome.gdc_realn.bam 9858641230 BAM transcriptome harmonized CPTAC3 4502652f-9bcb-451f-a175-c6006ca2967e 3effbe59924585f0272a70f99237a8e7 {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor"} -C3L-00781.RNA-Seq.transcriptome.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.transcriptome.gdc_realn.bam 8486219451 BAM transcriptome harmonized CPTAC3 bb4f39ca-6a9b-487a-8450-814abb7b8d66 ac5aab64d25fd7ae36b6d0fb502cfcc1 {"aliquot_tag": "ALQ_ba880251", "gdc_sample_type": "Primary Tumor"} -C3L-00789.MethArray.Green.T C3L-00789 CCRCC Methylation_Array tumor CPT0016030017 202184900127_R08C01_Grn.idat 13676248 IDAT Green NA CPTAC3 cdf5b3c0-a599-4935-81e4-85c6e523e503 0eaff6d33ea8094057a10a37dd5283b6 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor"} -C3L-00789.MethArray.Red.T C3L-00789 CCRCC Methylation_Array tumor CPT0016030017 202184900127_R08C01_Red.idat 13676248 IDAT Red NA CPTAC3 57aeddb4-886d-4b50-a400-6398e0fa5852 ddfed4fb7bf9dc0cdd154f49d24f3367 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor"} -C3L-00789.miRNA-Seq.S25_L002_R1.T C3L-00789 CCRCC miRNA-Seq tumor CPT0016030014 180924_UNC31-K00269_0154_AHWTMLBBXX_TCGAAG_S25_L002_R1_001.unaln.bam 261982729 BAM S25_L002_R1 unaligned CPTAC3 d8ba475d-0704-4194-b079-f8f4ea57bfaf 1378c6ac9fd93aaa7aa0665702f7ac08 {"aliquot_tag": "ALQ_ee6be5e1", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00789.miRNA-Seq.T.hg38 C3L-00789 CCRCC miRNA-Seq tumor CPT0016030014 932e1b51-4093-4066-a97b-b1da465a8ded_mirnaseq_gdc_realn.bam 291421997 BAM harmonized CPTAC3 6583572e-16d7-4612-bfff-06ee418fb4ac e530c197808b5180ee8a011d4412c9c1 {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor"} -C3L-00789.RNA-Seq.chimeric.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.chimeric.gdc_realn.bam 94063903 BAM chimeric harmonized CPTAC3 31a31e53-1649-4068-8af3-b2839d2c844e 29c15e779257ef7351df05cd67e7dc2e {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor"} -C3L-00789.RNA-Seq.genomic.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.genomic.gdc_realn.bam 9471814083 BAM genomic harmonized CPTAC3 238eebab-bc5e-4b3d-a93a-37080a14684e addbf2238029522ea7a2cc1d1ce2ca13 {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor"} -C3L-00789.RNA-Seq.S11_L003_R1.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R1_001.fastq.gz 4725773409 FASTQ S11_L003_R1 unaligned CPTAC3 21363c94-8e2c-4e7a-bcce-f2de1c193ca0 5cb34ccb175a341b22a5d9f6b484ce9b {"aliquot_tag": "ALQ_ee6be5e1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00789.RNA-Seq.S11_L003_R2.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R2_001.fastq.gz 5105086963 FASTQ S11_L003_R2 unaligned CPTAC3 f0ad7dbf-4e74-4255-834d-45fe2ad1cf3d 409251892f28fc20ea45f31fdd6c5cb2 {"aliquot_tag": "ALQ_ee6be5e1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00789.RNA-Seq.transcriptome.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.transcriptome.gdc_realn.bam 12738859942 BAM transcriptome harmonized CPTAC3 34e36b40-1780-4d7e-bd4d-74dc5db21255 a2761dbaedd6dd62a7fe55f72d8a2812 {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor"} -C3L-00789.WGS.N C3L-00789 CCRCC WGS blood_normal CPT0018330002 CPT0018330002.WholeGenome.RP-1303.bam 82716651874 BAM aligned CPTAC3 bb42ca23-3c85-4856-81c4-4d65860bd11c 119bfe0b4dc03f4e24540e42514c00bb {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal"} -C3L-00789.WGS.N.hg38 C3L-00789 CCRCC WGS blood_normal CPT0018330002 ff246444-2891-4a80-938b-cf5062af1a48_gdc_realn.bam 129442613107 BAM harmonized CPTAC3 34b9834d-1f0d-40e6-ab43-1950a3b78fdb 597cedeec95e5180e3a6c710e6a10a0b {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal"} -C3L-00789.WGS.T C3L-00789 CCRCC WGS tumor CPT0016030017 CPT0016030017.WholeGenome.RP-1303.bam 82557681660 BAM aligned CPTAC3 fe731431-7a47-4b96-aca4-2310c2c8171c b95190e82959c488f4968ab8b105bbe6 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor"} -C3L-00789.WGS.T.hg38 C3L-00789 CCRCC WGS tumor CPT0016030017 b0685694-85b6-45dc-bb9b-c08706fe4ea6_gdc_realn.bam 123206352643 BAM harmonized CPTAC3 e69186ee-6ff0-4a41-ba3d-f32c31a57671 b4f4a66909e4ce6cbc9fa82812d5e833 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor"} -C3L-00789.WXS.N C3L-00789 CCRCC WXS blood_normal CPT0018330002 CPT0018330002.WholeExome.RP-1303.bam 28792493119 BAM aligned CPTAC3 df9838a4-c512-4d05-b7c4-fd8c6c293e8d 3c976ede356e2a7afb362ddf0c3a229f {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal"} -C3L-00789.WXS.N.hg38 C3L-00789 CCRCC WXS blood_normal CPT0018330002 ff246444-2891-4a80-938b-cf5062af1a48_gdc_realn.bam 39223534652 BAM harmonized CPTAC3 b3cfca38-2252-40ee-bca6-65fd3b6d87aa cd52248375b0bc0e6a6559f52f09b115 {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal"} -C3L-00789.WXS.T C3L-00789 CCRCC WXS tumor CPT0016030017 CPT0016030017.WholeExome.RP-1303.bam 30532282451 BAM aligned CPTAC3 da7170c3-49ad-4208-a561-ff04c41c4a09 157581e4dc10ec710ab13710a58bb9de {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor"} -C3L-00789.WXS.T.hg38 C3L-00789 CCRCC WXS tumor CPT0016030017 b0685694-85b6-45dc-bb9b-c08706fe4ea6_gdc_realn.bam 41450274277 BAM harmonized CPTAC3 af1efd5b-f80e-4846-ab9f-49ba2fd90423 15cf98db8d31a7638c6f09451d099407 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor"} -C3L-00790.MethArray.Green.T C3L-00790 CCRCC Methylation_Array tumor CPT0065690009 202184900104_R06C01_Grn.idat 13676259 IDAT Green NA CPTAC3 ad87cbfa-d771-49b0-bc18-deebf7ebfb4a 3179636a681317a6cfb1c17174814704 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor"} -C3L-00790.MethArray.Red.T C3L-00790 CCRCC Methylation_Array tumor CPT0065690009 202184900104_R06C01_Red.idat 13676259 IDAT Red NA CPTAC3 9a3b4ca1-d4f9-491b-bc7e-9a702f3fd4d8 068464270f5ccc591ccdb5d900328e1e {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor"} -C3L-00790.miRNA-Seq.S7_L001_R1.T C3L-00790 CCRCC miRNA-Seq tumor CPT0065690006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L001_R1_001.unaln.bam 246331250 BAM S7_L001_R1 unaligned CPTAC3 df596c29-932f-4da5-885a-1e5c29ff1373 3f3eb22a34d25c043286e3e5c3eeb8df {"aliquot_tag": "ALQ_beba5db4", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00790.miRNA-Seq.T.hg38 C3L-00790 CCRCC miRNA-Seq tumor CPT0065690006 fd1efbfd-2a8f-44c5-bcc9-f18374d178ef_mirnaseq_gdc_realn.bam 272473846 BAM harmonized CPTAC3 a1d075d8-11df-47bd-bb9a-1a2fd16d4e3e f55ddc578d5accf9dbea3074deffa175 {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor"} -C3L-00790.RNA-Seq.chimeric.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.chimeric.gdc_realn.bam 35063478 BAM chimeric harmonized CPTAC3 cde4ca04-8951-4837-90fc-0d795dd25a2e 95a6f63b218df2e1c8abf8a4c7a462d5 {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor"} -C3L-00790.RNA-Seq.genomic.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.genomic.gdc_realn.bam 8104226435 BAM genomic harmonized CPTAC3 ab59bdd1-aa9c-4950-a966-7818068a6ad1 b8772cb405a5c650686332227aabec40 {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor"} -C3L-00790.RNA-Seq.S7_L002_R1.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3979549623 FASTQ S7_L002_R1 unaligned CPTAC3 972efe5e-789a-4322-abc9-54d270c2529d 312664197ad286db9cc29e042e61a6e1 {"aliquot_tag": "ALQ_beba5db4", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00790.RNA-Seq.S7_L002_R2.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4230683498 FASTQ S7_L002_R2 unaligned CPTAC3 5fe9ea2b-9e26-4437-8b2c-594d7c523abe 671d625060a8c06a362539b7a66438bf {"aliquot_tag": "ALQ_beba5db4", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00790.RNA-Seq.transcriptome.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.transcriptome.gdc_realn.bam 9729050387 BAM transcriptome harmonized CPTAC3 f760d5ae-2f9c-480e-b439-797461a974da f75313e188faa4f3ec2467e235fa6cea {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor"} -C3L-00790.WGS.N C3L-00790 CCRCC WGS blood_normal CPT0067650002 CPT0067650002.WholeGenome.RP-1303.bam 78244877560 BAM aligned CPTAC3 71ea60b9-caff-4226-a26b-0e287c2c8a50 1eed2a9378eb7a8d18dfab8d84eaa27e {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal"} -C3L-00790.WGS.N.hg38 C3L-00790 CCRCC WGS blood_normal CPT0067650002 cbeac8df-cedf-4e5a-9bbc-c16131c07ff6_gdc_realn.bam 123197442724 BAM harmonized CPTAC3 b29fae35-80ac-4cfb-8f2f-28396e2b3665 865bcd43601cb13276a4aced9e6caf0a {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal"} -C3L-00790.WGS.T C3L-00790 CCRCC WGS tumor CPT0065690009 CPT0065690009.WholeGenome.RP-1303.bam 67760143626 BAM aligned CPTAC3 0aae4948-9dd3-4a19-80ae-49b89cd3c5db 3be3c9aa7c5ce3619e2ad7dbc03f1ff2 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor"} -C3L-00790.WGS.T.hg38 C3L-00790 CCRCC WGS tumor CPT0065690009 5c91dbd2-6b5f-4899-aca2-48b765a4913c_gdc_realn.bam 102514963865 BAM harmonized CPTAC3 6d1af02f-7afc-4111-ab65-5014b33de8cd 03100e0975f0fac4356eef3a428b5739 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor"} -C3L-00790.WXS.N C3L-00790 CCRCC WXS blood_normal CPT0067650002 CPT0067650002.WholeExome.RP-1303.bam 35497354835 BAM aligned CPTAC3 229d7c2b-e850-4a3a-843e-745d87a9814c b12f59a67b49898c6a1fda5ccd462f99 {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal"} -C3L-00790.WXS.N.hg38 C3L-00790 CCRCC WXS blood_normal CPT0067650002 cbeac8df-cedf-4e5a-9bbc-c16131c07ff6_gdc_realn.bam 48513889388 BAM harmonized CPTAC3 43a08971-e8ec-46e4-9650-3a7f38fe3f5c c28ada034f930e94cb3825c70603c000 {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal"} -C3L-00790.WXS.T C3L-00790 CCRCC WXS tumor CPT0065690009 CPT0065690009.WholeExome.RP-1303.bam 37857914309 BAM aligned CPTAC3 cff5ae5e-91db-4b16-acc8-efa0bb4a942e 775207a873f6567e4ac0c61dbc3472c9 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor"} -C3L-00790.WXS.T.hg38 C3L-00790 CCRCC WXS tumor CPT0065690009 5c91dbd2-6b5f-4899-aca2-48b765a4913c_gdc_realn.bam 52440372058 BAM harmonized CPTAC3 71f9aa43-cc7e-416d-96a2-f0477bb1ae40 72d9366046a60c9460b042c773117ff7 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor"} -C3L-00791.MethArray.Green.T C3L-00791 CCRCC Methylation_Array tumor CPT0026410009 202176290145_R02C01_Grn.idat 13676224 IDAT Green NA CPTAC3 fe1cfca4-3274-4804-a49c-c86aca2ae120 9b10f8853a8b080f2dc529202ceb5aba {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor"} -C3L-00791.MethArray.Red.T C3L-00791 CCRCC Methylation_Array tumor CPT0026410009 202176290145_R02C01_Red.idat 13676224 IDAT Red NA CPTAC3 13af420c-5d07-44cc-a06f-bc7e6406e9ab 151f73a82878b9e991944dacc240afe7 {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor"} -C3L-00791.miRNA-Seq.S10_L001_R1.T C3L-00791 CCRCC miRNA-Seq tumor CPT0026410006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTTTCG_S10_L001_R1_001.unaln.bam 228587952 BAM S10_L001_R1 unaligned CPTAC3 b3285815-ef1b-41da-b812-8a377a84af64 6524d1700565fbcd33ff8724a5ea5836 {"aliquot_tag": "ALQ_76a0a319", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00791.miRNA-Seq.T.hg38 C3L-00791 CCRCC miRNA-Seq tumor CPT0026410006 d27767bf-3f96-4dfb-a538-e7b72eb5aaa8_mirnaseq_gdc_realn.bam 253208220 BAM harmonized CPTAC3 3f28babb-e7ae-4508-ac9d-3bdc373db1e7 e8965c924f368d703a67d2f0e0387c54 {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor"} -C3L-00791.RNA-Seq.chimeric.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.chimeric.gdc_realn.bam 77148667 BAM chimeric harmonized CPTAC3 f1e4d839-c438-4246-a512-dc26769f4d55 4e0cbc81e812e2fbffb6066aaecda4ea {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor"} -C3L-00791.RNA-Seq.genomic.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.genomic.gdc_realn.bam 8935972151 BAM genomic harmonized CPTAC3 07edb122-6acd-4436-a6aa-eb3a587538f6 f52edd36a4001431d78b7b4f30cbca54 {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor"} -C3L-00791.RNA-Seq.S9_L003_R1.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 4300418853 FASTQ S9_L003_R1 unaligned CPTAC3 6ddce4ca-3b32-4573-b613-e588b9b34b87 fa39c02805b59066fb2e13c89b3d65c0 {"aliquot_tag": "ALQ_76a0a319", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00791.RNA-Seq.S9_L003_R2.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4714136255 FASTQ S9_L003_R2 unaligned CPTAC3 846dd412-1ec5-420d-8961-dcdc94f110ba 9f626d4e474d5bf403a93be091751db3 {"aliquot_tag": "ALQ_76a0a319", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00791.RNA-Seq.transcriptome.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.transcriptome.gdc_realn.bam 12896173617 BAM transcriptome harmonized CPTAC3 72f81126-be40-491d-9896-cfb45ea4b16d c854cf906e0faa2c67572d856059646a {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor"} -C3L-00791.WGS.N C3L-00791 CCRCC WGS blood_normal CPT0029500002 CPT0029500002.WholeGenome.RP-1303.bam 70104973680 BAM aligned CPTAC3 7af0d581-f94f-4b0e-b1bf-78d0eff14506 8c588a46837bd6eef9f6ab8382dba3f1 {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00791.WGS.N.hg38 C3L-00791 CCRCC WGS blood_normal CPT0029500002 03f0c034-cfab-4864-bfcf-fcdeabec1493_gdc_realn.bam 101621896998 BAM harmonized CPTAC3 4b23c136-5d2a-4cd0-8df6-a89b4f0fd28d 5187ecbde68c37031028b23b75c21c35 {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00791.WGS.T C3L-00791 CCRCC WGS tumor CPT0026410009 CPT0026410009.WholeGenome.RP-1303.bam 72831008675 BAM aligned CPTAC3 ebf9b25a-f1d0-4be1-830d-004432793355 9b88a3329fd23ba6273079a2d87f651b {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor"} -C3L-00791.WGS.T.hg38 C3L-00791 CCRCC WGS tumor CPT0026410009 91a5b1e6-a1b8-4402-b8ce-842c721fdbcc_gdc_realn.bam 106586916548 BAM harmonized CPTAC3 f8df22ae-47eb-44f1-9cd5-d454bb132100 ccb1581fb771bbd037d60ecea63f5c6d {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor"} -C3L-00791.WXS.N C3L-00791 CCRCC WXS blood_normal CPT0029500002 CPT0029500002.WholeExome.RP-1303.bam 29710393770 BAM aligned CPTAC3 acdb5f29-a1ce-48a6-8a91-5f790691bfa4 0d7b110c20e8d65854383a843b6a27a2 {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00791.WXS.N.hg38 C3L-00791 CCRCC WXS blood_normal CPT0029500002 03f0c034-cfab-4864-bfcf-fcdeabec1493_gdc_realn.bam 40523806713 BAM harmonized CPTAC3 f6b5a86d-d09d-48a5-8605-0bebc1aff8d3 5cbce6d058777219d4a7e8fe1f82925d {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal"} -C3L-00791.WXS.T C3L-00791 CCRCC WXS tumor CPT0026410009 CPT0026410009.WholeExome.RP-1303.bam 26900995481 BAM aligned CPTAC3 b081727c-55e9-4c3b-8de2-9daa0637634b 2da6505e742ffe582f8bb5fb8b511f3d {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor"} -C3L-00791.WXS.T.hg38 C3L-00791 CCRCC WXS tumor CPT0026410009 91a5b1e6-a1b8-4402-b8ce-842c721fdbcc_gdc_realn.bam 36855681931 BAM harmonized CPTAC3 e344d21b-8d68-4f4a-b990-3fa7a28da155 6f11cc2a936e6a7b5c54762dff18189e {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor"} -C3L-00792.MethArray.Green.T C3L-00792 CCRCC Methylation_Array tumor CPT0015730006 202184900111_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a2dbf534-3b7f-48eb-b142-910ea11a0984 5aabade64489d61dfb349aaf241ab0c6 {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor"} -C3L-00792.MethArray.Red.T C3L-00792 CCRCC Methylation_Array tumor CPT0015730006 202184900111_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 0f860e8c-d7ef-4a3e-a0ac-081dad06af2f 8b8ce2b87ab77b62f462bfdbc2098e6c {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor"} -C3L-00792.miRNA-Seq.S33_L002_R1.T C3L-00792 CCRCC miRNA-Seq tumor CPT0015730009 180924_UNC31-K00269_0154_AHWTMLBBXX_CTATAC_S33_L002_R1_001.unaln.bam 286415302 BAM S33_L002_R1 unaligned CPTAC3 534db37f-36d2-473f-9e3b-a8a24f80ed3c 7d82320f857dcde49db7fdea492b785b {"aliquot_tag": "ALQ_a52c8238", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00792.miRNA-Seq.T.hg38 C3L-00792 CCRCC miRNA-Seq tumor CPT0015730009 91926337-d909-4f0a-8631-204cb3371bb7_mirnaseq_gdc_realn.bam 313583836 BAM harmonized CPTAC3 93be8f91-ad86-492c-8e2f-b1d64e950062 00defc2e05377f1f830f63122b07d440 {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor"} -C3L-00792.RNA-Seq.chimeric.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.chimeric.gdc_realn.bam 91996674 BAM chimeric harmonized CPTAC3 6850ecc8-6a66-4df8-8d92-4b371644a019 32b32470065c9c8abd2be32339ac9edd {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor"} -C3L-00792.RNA-Seq.genomic.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.genomic.gdc_realn.bam 9587669259 BAM genomic harmonized CPTAC3 701595ac-dbbb-4bc9-a824-d7db1e11b6f5 04650b1f3ab6f5e0f795842c3b476d0b {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor"} -C3L-00792.RNA-Seq.S8_L002_R1.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R1_001.fastq.gz 4724301911 FASTQ S8_L002_R1 unaligned CPTAC3 418b4a44-7b5c-4d1a-b591-58e9bc0b2057 45529a36ef1468a1be8192f61ef0da54 {"aliquot_tag": "ALQ_a52c8238", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00792.RNA-Seq.S8_L002_R2.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R2_001.fastq.gz 5148534146 FASTQ S8_L002_R2 unaligned CPTAC3 d48b1dd6-ab67-46ea-b1c7-0620df168c0c 543955e15dfe9624f89d06c40f365988 {"aliquot_tag": "ALQ_a52c8238", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00792.RNA-Seq.transcriptome.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.transcriptome.gdc_realn.bam 12933075148 BAM transcriptome harmonized CPTAC3 0f544acc-e1e3-43d4-b3d5-740b77df3237 e909bf5c99e578a22b306442e57c876e {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor"} -C3L-00792.WGS.N C3L-00792 CCRCC WGS blood_normal CPT0018270002 CPT0018270002.WholeGenome.RP-1303.bam 69328786507 BAM aligned CPTAC3 804253ff-772b-4bff-827f-6e3e71c65778 b9d17ae042e3b0c716c2401517dd6ae2 {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal"} -C3L-00792.WGS.N.hg38 C3L-00792 CCRCC WGS blood_normal CPT0018270002 401e7be3-c452-497d-8b39-8e935cbd9717_gdc_realn.bam 102365948134 BAM harmonized CPTAC3 04c2befc-0ce9-49f9-8502-375f912c7e42 b79c47dd7e0d993281c597d9fbb28e28 {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal"} -C3L-00792.WGS.T C3L-00792 CCRCC WGS tumor CPT0015730006 CPT0015730006.WholeGenome.RP-1303.bam 59467085845 BAM aligned CPTAC3 164e099a-35b5-43bb-a408-351c08634e66 1f8569556fcbb03e31b2b0476210f473 {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor"} -C3L-00792.WGS.T.hg38 C3L-00792 CCRCC WGS tumor CPT0015730006 8b094979-2a4a-4add-93f2-51bb3752ee1d_gdc_realn.bam 84813853196 BAM harmonized CPTAC3 17dc6e04-a833-465a-ad35-16c8d4a4b232 26b33aa4e5ae4330befcb8ee7aea857e {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor"} -C3L-00792.WXS.N C3L-00792 CCRCC WXS blood_normal CPT0018270002 CPT0018270002.WholeExome.RP-1303.bam 32473993083 BAM aligned CPTAC3 700c9f3e-f18f-4600-bfad-3eb7a66f03a7 0fe1368cb165229c7982c43b0d69ded2 {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal"} -C3L-00792.WXS.N.hg38 C3L-00792 CCRCC WXS blood_normal CPT0018270002 401e7be3-c452-497d-8b39-8e935cbd9717_gdc_realn.bam 44240617871 BAM harmonized CPTAC3 c3ee4122-c0a6-45db-ae00-190c0a982ec5 668c527e6d489e0cb7a1a2f65f22fe6a {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal"} -C3L-00792.WXS.T C3L-00792 CCRCC WXS tumor CPT0015730006 CPT0015730006.WholeExome.RP-1303.bam 20772832372 BAM aligned CPTAC3 b9af592c-9659-4292-8f4c-4a6f2fed8ac3 2e8bb4daff1283a87d58cbef3a0e39ab {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor"} -C3L-00792.WXS.T.hg38 C3L-00792 CCRCC WXS tumor CPT0015730006 8b094979-2a4a-4add-93f2-51bb3752ee1d_gdc_realn.bam 28067539296 BAM harmonized CPTAC3 902d5260-8d92-4c33-8258-3fb9ccf54d6e 506b811f1088c6b9abff2e3cac595b86 {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor"} -C3L-00795.MethArray.Green.T C3L-00795 CCRCC Methylation_Array tumor CPT0390400006 205589740003_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 506ca660-c198-4360-aa15-420355fa61e9 48106e96e6ebb24e2554909c9a13324e {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor"} -C3L-00795.MethArray.Red.T C3L-00795 CCRCC Methylation_Array tumor CPT0390400006 205589740003_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 ceba3f63-9317-4d7d-af9a-4c255c7e28b5 3f0bd1c4773b6f683e791574f6d51327 {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor"} -C3L-00795.miRNA-Seq.A.hg38 C3L-00795 CCRCC miRNA-Seq tissue_normal CPT0390410005 2314f6b4-b677-4aec-b0fb-1db76a89ffed_mirnaseq_gdc_realn.bam 238913478 BAM harmonized CPTAC3 f0e70095-58b1-4a77-b047-8b14bfccf657 f037eb64118ba083f96442a930ae1edb {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00795.miRNA-Seq.S29_L002_R1.A C3L-00795 CCRCC miRNA-Seq tissue_normal CPT0390410005 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTATAC_S29_L002_R1_001.unaln.bam 221661557 BAM S29_L002_R1 unaligned CPTAC3 c4ac5314-b5c2-4107-8aea-40600b7ff419 445c9000a8b38f06bac9635a7e5e4a64 {"aliquot_tag": "ALQ_e89ee70a", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00795.miRNA-Seq.S34_L002_R1.T C3L-00795 CCRCC miRNA-Seq tumor CPT0390400009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TATAAT_S34_L002_R1_001.unaln.bam 291501428 BAM S34_L002_R1 unaligned CPTAC3 e13aa51d-bb66-433f-b04c-0906333bc1a7 6accaaa449154a2247c681d08a001663 {"aliquot_tag": "ALQ_dc488291", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00795.miRNA-Seq.T.hg38 C3L-00795 CCRCC miRNA-Seq tumor CPT0390400009 62c7350c-4c81-4740-8a8f-1f87aa165372_mirnaseq_gdc_realn.bam 307543489 BAM harmonized CPTAC3 a02620b4-4aa9-400e-8bcf-e92291c583a8 23bb0f0fe9215dea6042ed5cc8572df4 {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor"} -C3L-00795.RNA-Seq.chimeric.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.chimeric.gdc_realn.bam 304646200 BAM chimeric harmonized CPTAC3 4e23a54e-3838-4d5b-be3a-44498a37d071 ef340fbe194457c9da4218c57f9d9fd5 {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00795.RNA-Seq.chimeric.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.chimeric.gdc_realn.bam 462636042 BAM chimeric harmonized CPTAC3 769b59df-52f5-42d5-a967-dcdbb0800063 9c6e8e0e25da2a0f7f943a8dbf9debab {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor"} -C3L-00795.RNA-Seq.genomic.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.genomic.gdc_realn.bam 8283598547 BAM genomic harmonized CPTAC3 bf57d7e1-34cf-4d60-86ec-fa021329db57 5e8e7f96e4a7cf6e94d2904fe670abbc {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00795.RNA-Seq.genomic.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.genomic.gdc_realn.bam 7995674794 BAM genomic harmonized CPTAC3 d8338ba0-e107-45ef-b449-14ea19c0cc1b 900eeb532de21a46c36bdc7ac15ff05c {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor"} -C3L-00795.RNA-Seq.S25_L007_R1.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R1_001.fastq.gz 3803721233 FASTQ S25_L007_R1 unaligned CPTAC3 d8c01c7d-aae7-4d23-a437-15b0457b2291 1a4ec24c816e4656037343e989082e0e {"aliquot_tag": "ALQ_dc488291", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00795.RNA-Seq.S25_L007_R2.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R2_001.fastq.gz 4333563120 FASTQ S25_L007_R2 unaligned CPTAC3 22e60829-f5a8-4b30-963e-dd6b19069950 8f5d0783d62899c2c5de2471ab4af6f6 {"aliquot_tag": "ALQ_dc488291", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00795.RNA-Seq.S28_L008_R1.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R1_001.fastq.gz 3749868315 FASTQ S28_L008_R1 unaligned CPTAC3 60da8d69-0096-4500-8d40-963b42393608 29cd37cd5a7a97b21a22d8750133d661 {"aliquot_tag": "ALQ_e89ee70a", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00795.RNA-Seq.S28_L008_R2.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R2_001.fastq.gz 4344051452 FASTQ S28_L008_R2 unaligned CPTAC3 0acef3b0-f83f-4558-ae54-1f6658fed925 1fbc5b5d00af59bd97928fa7d8cb6a92 {"aliquot_tag": "ALQ_e89ee70a", "sample": "S28", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00795.RNA-Seq.transcriptome.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.transcriptome.gdc_realn.bam 9771607477 BAM transcriptome harmonized CPTAC3 9eda9824-88b1-4959-8e60-18faa81214ad 5eefd7dc27e7b3f7d5c61f4c96f4eb7e {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00795.RNA-Seq.transcriptome.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.transcriptome.gdc_realn.bam 8668082954 BAM transcriptome harmonized CPTAC3 1eb2ddbd-92cc-445e-a43a-aa0b9de63219 3908c3ac7aab4f6284baf47388e247fe {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor"} -C3L-00795.WGS.N C3L-00795 CCRCC WGS blood_normal CPT0390460002 CPT0390460002.WholeGenome.RP-2158.bam 21458217924 BAM aligned CPTAC3 ecab0bd2-3f38-4371-a9af-493c780372de 6bbd3b9a319b3726a3b610f78f1f3878 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00795.WGS.N.hg38 C3L-00795 CCRCC WGS blood_normal CPT0390460002 9446dc9c-5b27-485b-9a28-8d42137fb140_wgs_gdc_realn.bam 64722217360 BAM harmonized CPTAC3 4562b7fe-e382-4a9b-8bb4-628d45bfadbf 2049f2ec76a808e2be8cd826de2c6e45 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00795.WGS.T C3L-00795 CCRCC WGS tumor CPT0390400006 CPT0390400006.WholeGenome.RP-2158.bam 23686428322 BAM aligned CPTAC3 d9386648-669f-4d93-a317-6e0a59a55e7b 7e8edc0d8a4d74f95b3c94790ed403ff {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor"} -C3L-00795.WGS.T.hg38 C3L-00795 CCRCC WGS tumor CPT0390400006 57ee5463-b1e2-443b-ab6c-9f709719b72f_wgs_gdc_realn.bam 73073736353 BAM harmonized CPTAC3 6c844a04-ef09-4910-81cc-a8734b084606 70f48c0a4c10f6a3d3109f34db2440fa {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor"} -C3L-00795.WXS.N C3L-00795 CCRCC WXS blood_normal CPT0390460002 CPT0390460002.WholeExome.RP-1303.bam 24282585847 BAM aligned CPTAC3 e11f3ff3-ad7f-4c27-abb1-eed950172a55 166f9a9e05fdf08278da64f997fdc887 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00795.WXS.N.hg38 C3L-00795 CCRCC WXS blood_normal CPT0390460002 9446dc9c-5b27-485b-9a28-8d42137fb140_wxs_gdc_realn.bam 33578428857 BAM harmonized CPTAC3 d3996481-36ad-4d20-a7d1-27dfe659cd47 e2999bdc2c602409b7fdbc7288c11136 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00795.WXS.T C3L-00795 CCRCC WXS tumor CPT0390400006 CPT0390400006.WholeExome.RP-1303.bam 25719729084 BAM aligned CPTAC3 6a000c4c-13c1-44c7-b234-932ba520ae28 0576d7a65f2055b426ea8bd31b2437a9 {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor"} -C3L-00795.WXS.T.hg38 C3L-00795 CCRCC WXS tumor CPT0390400006 57ee5463-b1e2-443b-ab6c-9f709719b72f_wxs_gdc_realn.bam 35515622713 BAM harmonized CPTAC3 749e5303-c654-4a1b-ae97-63c72e94875b 72f083430c1ad9c8b5662d26f008c598 {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor"} -C3L-00796.MethArray.Green.T C3L-00796 CCRCC Methylation_Array tumor CPT0065750009 202184900149_R04C01_Grn.idat 13676256 IDAT Green NA CPTAC3 350d1fb3-357f-4e96-953b-2a6adff0c741 8f5088c3cad078121b46272c101fc499 {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor"} -C3L-00796.MethArray.Red.T C3L-00796 CCRCC Methylation_Array tumor CPT0065750009 202184900149_R04C01_Red.idat 13676256 IDAT Red NA CPTAC3 e700b1c8-927b-44af-a90b-87e5b8451b42 73068316e545af9c5012ef8c306e496b {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor"} -C3L-00796.miRNA-Seq.S18_L001_R1.T C3L-00796 CCRCC miRNA-Seq tumor CPT0065750006 181113_UNC31-K00269_0164_AH23NNBBXY_TAATCG_S18_L001_R1_001.unaln.bam 196623341 BAM S18_L001_R1 unaligned CPTAC3 6cb98829-1a47-40c2-ab0f-2fb74922cb59 3c91ee25e1322b56e8eae76503550f7f {"aliquot_tag": "ALQ_b0166310", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00796.miRNA-Seq.T.hg38 C3L-00796 CCRCC miRNA-Seq tumor CPT0065750006 7d00c1eb-9dc9-430a-93e6-dcef4d869fca_mirnaseq_gdc_realn.bam 219148533 BAM harmonized CPTAC3 fbd0dfb8-40b8-4587-aeed-642c8eb0ab1b c209f4f55220fa21c1490e2d5189acad {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor"} -C3L-00796.RNA-Seq.chimeric.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.chimeric.gdc_realn.bam 25085483 BAM chimeric harmonized CPTAC3 00ca68d2-a1cb-489d-9e18-aa55763f0306 6762b77ea81f50ed815594f5d22ba116 {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor"} -C3L-00796.RNA-Seq.genomic.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.genomic.gdc_realn.bam 7213439475 BAM genomic harmonized CPTAC3 42f8ee7e-aff7-4e7a-a9cf-fa04d6926c42 7305c84b717f5168875ccd4e76ac75c1 {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor"} -C3L-00796.RNA-Seq.S3_L001_R1.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 3647739042 FASTQ S3_L001_R1 unaligned CPTAC3 b85c5a99-7f85-4c3b-bb05-186d0a4b4dbc dce9a92f7368c36a9ac9bf382e5444b2 {"aliquot_tag": "ALQ_b0166310", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00796.RNA-Seq.S3_L001_R2.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 3877592392 FASTQ S3_L001_R2 unaligned CPTAC3 f624070c-7dde-4481-afb4-c2b17f00d0db 6b73fbad230321c283c932346a9e128b {"aliquot_tag": "ALQ_b0166310", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00796.RNA-Seq.transcriptome.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.transcriptome.gdc_realn.bam 9704683776 BAM transcriptome harmonized CPTAC3 fea91530-3577-4a70-998a-8da1cafc97f0 cd97fcc8ef5bca645ef1975b137aee4f {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor"} -C3L-00796.WGS.N C3L-00796 CCRCC WGS blood_normal CPT0067670002 CPT0067670002.WholeGenome.RP-1303.bam 76610002151 BAM aligned CPTAC3 e88b9810-f079-404e-b530-39e3180769bc bef134487350d135fd5ba0617e872d8e {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00796.WGS.N.hg38 C3L-00796 CCRCC WGS blood_normal CPT0067670002 84092027-a164-403e-9910-428f99097697_gdc_realn.bam 116014166470 BAM harmonized CPTAC3 09da6812-c956-4b0a-8197-22750ad5fe22 beb9292b8d6e66d462fa160af817d1ba {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00796.WGS.T C3L-00796 CCRCC WGS tumor CPT0065750009 CPT0065750009.WholeGenome.RP-1303.bam 65204025377 BAM aligned CPTAC3 ef249278-d922-45d4-ae27-5147cf4fb7d4 883d353ffc4a8685f2912314497db6ee {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor"} -C3L-00796.WGS.T.hg38 C3L-00796 CCRCC WGS tumor CPT0065750009 b4d752c8-7996-433f-8e5b-4b9d748eefa5_gdc_realn.bam 97312376207 BAM harmonized CPTAC3 7a1b9d0e-3801-4de2-b9a9-c33bfc996948 9a7c3bcff39f078b516137d4960d2dfd {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor"} -C3L-00796.WXS.N C3L-00796 CCRCC WXS blood_normal CPT0067670002 CPT0067670002.WholeExome.RP-1303.bam 33188081381 BAM aligned CPTAC3 1c7b2184-d1e0-4f43-ad8d-805fe9311986 11bf552a78f0570cc528c759e6641b94 {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00796.WXS.N.hg38 C3L-00796 CCRCC WXS blood_normal CPT0067670002 84092027-a164-403e-9910-428f99097697_gdc_realn.bam 46190370414 BAM harmonized CPTAC3 f671cd0d-6c12-48ee-80fd-44bf196617fa 2856118b05f2c17f569f7cd22393fc5f {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00796.WXS.T C3L-00796 CCRCC WXS tumor CPT0065750009 CPT0065750009.WholeExome.RP-1303.bam 23714519779 BAM aligned CPTAC3 782754e0-2609-4f23-bd92-2337a483358b 55826c471914aaabecf0bc9dbccc8c31 {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor"} -C3L-00796.WXS.T.hg38 C3L-00796 CCRCC WXS tumor CPT0065750009 b4d752c8-7996-433f-8e5b-4b9d748eefa5_gdc_realn.bam 32725995134 BAM harmonized CPTAC3 1be1b056-c206-40a4-a86a-c4e9f0603acb 008d87722a68720251017759ea8a78b7 {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor"} -C3L-00799.MethArray.Green.T C3L-00799 CCRCC Methylation_Array tumor CPT0025230009 202163550115_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a6b1aa3c-a6a8-4af1-ae0c-a777debeb0c2 a2e1267cdad5541187a3cb4a902b592b {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor"} -C3L-00799.MethArray.Red.T C3L-00799 CCRCC Methylation_Array tumor CPT0025230009 202163550115_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 6a75eaa6-6e76-4a96-9cd2-69a47cf3b2ee 0789b4b826d4ddd7b5ae254cb4f0dbc3 {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor"} -C3L-00799.miRNA-Seq.S19_L001_R1.T C3L-00799 CCRCC miRNA-Seq tumor CPT0025230006 180924_UNC31-K00269_0154_AHWTMLBBXX_GATCAG_S19_L001_R1_001.unaln.bam 232714153 BAM S19_L001_R1 unaligned CPTAC3 4cd3f600-db95-44ee-aeaa-23fe5be8bd90 705f5fd507ba2f77778bcaf44b7d44fb {"aliquot_tag": "ALQ_ebd109f9", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00799.miRNA-Seq.T.hg38 C3L-00799 CCRCC miRNA-Seq tumor CPT0025230006 b97d1a52-3605-4daa-a7fa-247b05699086_mirnaseq_gdc_realn.bam 253452078 BAM harmonized CPTAC3 e36313e1-ff0d-4ddf-88ba-8fd349ed4725 17055b29f459ca39f4bb12e6038e9efc {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor"} -C3L-00799.RNA-Seq.chimeric.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.chimeric.gdc_realn.bam 89190442 BAM chimeric harmonized CPTAC3 48a067c5-7bd3-4012-8af6-539d8a27473d 73bedfe701d440c651d6eba6b438b724 {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor"} -C3L-00799.RNA-Seq.genomic.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.genomic.gdc_realn.bam 8898103423 BAM genomic harmonized CPTAC3 930ff244-9aaf-4df1-82b7-c4efa9da77da b9e34d8294317221654a8767e036820f {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor"} -C3L-00799.RNA-Seq.S16_L007_R1.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R1_001.fastq.gz 4340817274 FASTQ S16_L007_R1 unaligned CPTAC3 6909bf98-cfab-4785-94df-39493636749c 935ac003bc9de2ee577a554f451f0117 {"aliquot_tag": "ALQ_ebd109f9", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00799.RNA-Seq.S16_L007_R2.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R2_001.fastq.gz 4586496523 FASTQ S16_L007_R2 unaligned CPTAC3 8640020d-5e63-47cb-a682-379ef0c43911 073bd722ba008c5e943654b3d72ce097 {"aliquot_tag": "ALQ_ebd109f9", "sample": "S16", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00799.RNA-Seq.transcriptome.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.transcriptome.gdc_realn.bam 11869499232 BAM transcriptome harmonized CPTAC3 b7f6be2b-ac37-4121-8672-5f6201770835 2aa685a70a4b91146170f95af28535c5 {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor"} -C3L-00799.WGS.N C3L-00799 CCRCC WGS blood_normal CPT0029440002 CPT0029440002.WholeGenome.RP-1303.bam 65751060077 BAM aligned CPTAC3 da8ed29c-ecaa-41e1-acd8-2311fb4fdf07 2b49ae3a02bd092df735c51cfa0e8218 {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal"} -C3L-00799.WGS.N.hg38 C3L-00799 CCRCC WGS blood_normal CPT0029440002 d621aff7-2313-4cf3-b903-47e3694c13e5_gdc_realn.bam 95506295695 BAM harmonized CPTAC3 159b4afe-b1e0-4e35-8645-02057350c16c db758732436214f6a8ddeb52dad9be4b {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal"} -C3L-00799.WGS.T C3L-00799 CCRCC WGS tumor CPT0025230009 CPT0025230009.WholeGenome.RP-1303.bam 61332219647 BAM aligned CPTAC3 a4454836-e5db-48d7-8da2-6c75e34ece79 c8e1fe93f64da050d265231eb4cdc9ba {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor"} -C3L-00799.WGS.T.hg38 C3L-00799 CCRCC WGS tumor CPT0025230009 fcd2143a-2187-492c-95fc-c6d971f11153_gdc_realn.bam 89139045955 BAM harmonized CPTAC3 80c01f95-c3a9-42fa-911b-308c7e2406b5 21b0630a48b1009fc7a67c8b94483f21 {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor"} -C3L-00799.WXS.N C3L-00799 CCRCC WXS blood_normal CPT0029440002 CPT0029440002.WholeExome.RP-1303.bam 47460992977 BAM aligned CPTAC3 b526cd1f-8bd3-4747-99fa-51ddb16f800e d82872156b761bffa0d884f31b7c032d {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal"} -C3L-00799.WXS.N.hg38 C3L-00799 CCRCC WXS blood_normal CPT0029440002 d621aff7-2313-4cf3-b903-47e3694c13e5_gdc_realn.bam 63433737246 BAM harmonized CPTAC3 35d4a4d5-b1d1-40f8-80ec-95b563912a40 2efdb237f1e00923769beddc89693f84 {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal"} -C3L-00799.WXS.T C3L-00799 CCRCC WXS tumor CPT0025230009 CPT0025230009.WholeExome.RP-1303.bam 21813981067 BAM aligned CPTAC3 d210ad88-363b-47cc-9032-0f9a8d9b21d3 7d87d673cd4beaa231b459831b32ac6b {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor"} -C3L-00799.WXS.T.hg38 C3L-00799 CCRCC WXS tumor CPT0025230009 fcd2143a-2187-492c-95fc-c6d971f11153_gdc_realn.bam 29717919086 BAM harmonized CPTAC3 6f4bb964-9069-47a2-9330-0329623d85e8 6224db207d5c0ce15ebb1fcd289540c3 {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor"} -C3L-00800.MethArray.Green.T C3L-00800 CCRCC Methylation_Array tumor CPT0025290009 202184990059_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b5a546a7-f70f-4923-909a-34c2399d73c2 03c49e87fbf05dab176e8a81e526d8fc {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor"} -C3L-00800.MethArray.Red.T C3L-00800 CCRCC Methylation_Array tumor CPT0025290009 202184990059_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 8e1ac8f6-787a-4db2-9597-3d4176836f12 10c933e95405f3a1098fdf0c1afbe5ba {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor"} -C3L-00800.miRNA-Seq.S4_L003_R1.T C3L-00800 CCRCC miRNA-Seq tumor CPT0025290006 181113_UNC31-K00269_0164_AH23NNBBXY_CAAAAG_S4_L003_R1_001.unaln.bam 228444479 BAM S4_L003_R1 unaligned CPTAC3 6ac9f63f-8162-49e1-9961-2415fd56f30d 3661ba9799a9ae9f1dbb46570eaff4be {"aliquot_tag": "ALQ_a1611158", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00800.miRNA-Seq.T.hg38 C3L-00800 CCRCC miRNA-Seq tumor CPT0025290006 244f0e46-7475-4cfb-a38c-002a96971108_mirnaseq_gdc_realn.bam 251011501 BAM harmonized CPTAC3 ba96ac4c-6cea-4f45-8665-1ef148c97da3 57e7e6d0e280f440719ef62c11dc505b {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor"} -C3L-00800.RNA-Seq.chimeric.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.chimeric.gdc_realn.bam 99963060 BAM chimeric harmonized CPTAC3 8ceeeba1-a02b-442d-b32c-b068d64a860b ea63bb20c9bb8071437e26bd87fdf332 {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor"} -C3L-00800.RNA-Seq.genomic.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.genomic.gdc_realn.bam 9738450300 BAM genomic harmonized CPTAC3 5c41ce48-f87a-44b0-86ef-a7c6663f0ec6 44db48e22a80ce968ebfab920973a29c {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor"} -C3L-00800.RNA-Seq.S4_L001_R1.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4662823186 FASTQ S4_L001_R1 unaligned CPTAC3 85a4efc7-01aa-438e-b67c-9a1329b3ee90 6a04593f5aaa43bdc823c83e3941ddf0 {"aliquot_tag": "ALQ_a1611158", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00800.RNA-Seq.S4_L001_R2.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R2_001.fastq.gz 5118016100 FASTQ S4_L001_R2 unaligned CPTAC3 571b76da-154b-46a3-9d5e-e65eec367ce8 2a2cde4da616bdd92a98643001236c22 {"aliquot_tag": "ALQ_a1611158", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00800.RNA-Seq.transcriptome.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.transcriptome.gdc_realn.bam 12379856707 BAM transcriptome harmonized CPTAC3 e454d907-96a1-4127-98b8-65f35dad9468 e2b9272c5d89ac2dadc0c0dbccc921e7 {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor"} -C3L-00800.WGS.N C3L-00800 CCRCC WGS blood_normal CPT0029460002 CPT0029460002.WholeGenome.RP-1303.bam 60806556141 BAM aligned CPTAC3 f4e34d62-76d7-445b-a97c-52ae65438301 c31fa45c1316afd538f8e87b64e312d2 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00800.WGS.N.hg38 C3L-00800 CCRCC WGS blood_normal CPT0029460002 315ae7de-a352-42c6-84df-468470b72af9_gdc_realn.bam 89799621222 BAM harmonized CPTAC3 0beccacb-bc6e-4118-af83-5c807c3aae8f b787319093521f3b32248c3d1dcc1272 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00800.WGS.T C3L-00800 CCRCC WGS tumor CPT0025290009 CPT0025290009.WholeGenome.RP-1303.bam 58573135912 BAM aligned CPTAC3 2a635586-9f40-49c4-875a-fe76a5c53e2e 0ba267732aa0d07d2cd3fc5c3e7a4a0a {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor"} -C3L-00800.WGS.T.hg38 C3L-00800 CCRCC WGS tumor CPT0025290009 fb0a5b93-cf6f-4913-a95f-3f650242406e_gdc_realn.bam 86315808411 BAM harmonized CPTAC3 04349d60-1055-4080-8835-8635d3734b15 700d91814b1f92199468113558b8fe88 {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor"} -C3L-00800.WXS.N C3L-00800 CCRCC WXS blood_normal CPT0029460002 CPT0029460002.WholeExome.RP-1303.bam 23006578443 BAM aligned CPTAC3 7b65b620-7dbc-4721-ad63-8d2d3c201e8d ae14f2a115cb527dbabf686f2cad5464 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00800.WXS.N.hg38 C3L-00800 CCRCC WXS blood_normal CPT0029460002 315ae7de-a352-42c6-84df-468470b72af9_gdc_realn.bam 31174972580 BAM harmonized CPTAC3 e4502b00-9363-45db-91de-98f49c8c032b f3ce4c7ef4f3f27c4eb260d487295f24 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal"} -C3L-00800.WXS.T C3L-00800 CCRCC WXS tumor CPT0025290009 CPT0025290009.WholeExome.RP-1303.bam 26288979934 BAM aligned CPTAC3 d7288e76-c38e-47a0-a9ac-a4b22af8ad35 697a36922b513fb07030b0e71e9488a6 {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor"} -C3L-00800.WXS.T.hg38 C3L-00800 CCRCC WXS tumor CPT0025290009 fb0a5b93-cf6f-4913-a95f-3f650242406e_gdc_realn.bam 36282163449 BAM harmonized CPTAC3 248e2530-f079-46bd-9aa0-fe592a878707 b510707b479b56631bf21eccff21f75a {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor"} -C3L-00807.MethArray.Green.Tpb C3L-00807 AML Methylation_Array tumor_peripheral_blood CPT0262160002 203561450006_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b4c7b3eb-951f-4f06-badb-0468fdcdbc00 678c7b103684e2c9d9572cc465a98192 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.MethArray.Red.Tpb C3L-00807 AML Methylation_Array tumor_peripheral_blood CPT0262160002 203561450006_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9850a500-269c-432d-904e-739307380342 19751057e1268af936916108dfbba2d0 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.miRNA-Seq.S8_L004_R1.Tpb C3L-00807 AML miRNA-Seq tumor_peripheral_blood CPT0262170002 190813_UNC32-K00270_0196_AH5MCWBBXY_GAGTGG_S8_L004_R1_001.unaln.bam 167813813 BAM S8_L004_R1 unaligned CPTAC3 39758953-6c41-49d8-bda2-ff1447bb0f94 e1994ca6e692dce9cf954ca550d97c4a {"aliquot_tag": "ALQ_f0b3017c", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.miRNA-Seq.Tpb.hg38 C3L-00807 AML miRNA-Seq tumor_peripheral_blood CPT0262170002 62e606e2-f304-4820-9096-2302b3b8adb3_mirnaseq_gdc_realn.bam 196363962 BAM harmonized CPTAC3 a735b069-fdb8-4013-8878-496dc5492c50 4be4610840c5267c9c6e5f4a800a762f {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.RNA-Seq.chimeric.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.chimeric.gdc_realn.bam 26913190 BAM chimeric harmonized CPTAC3 39535f49-fd42-405f-92ac-6894b66a960e b1b4748ae031388a009b1d0af56817eb {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.RNA-Seq.genomic.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.genomic.gdc_realn.bam 6896604411 BAM genomic harmonized CPTAC3 2ffffb00-947a-4ea4-acff-5b494edd200f aeddebcd07bfe9ef91394b0c5e8b07d2 {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.RNA-Seq.S9_L003_R1.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R1_001.fastq.gz 3247473070 FASTQ S9_L003_R1 unaligned CPTAC3 8a747393-0639-4d97-ac15-1707590bb135 2dbe4aad3ae30c444d920353c1dc0085 {"aliquot_tag": "ALQ_f0b3017c", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.RNA-Seq.S9_L003_R2.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R2_001.fastq.gz 3560938323 FASTQ S9_L003_R2 unaligned CPTAC3 c116d373-027e-4a79-a055-94b61358e8a3 06e1067c45d56e4a6e085e65272ae156 {"aliquot_tag": "ALQ_f0b3017c", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.RNA-Seq.transcriptome.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.transcriptome.gdc_realn.bam 6363558457 BAM transcriptome harmonized CPTAC3 c36e4031-a022-4172-bca2-fee36c561b00 9ab41c93bd0347bdafdf004164ef78c1 {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.WGS.Nbc C3L-00807 AML WGS buccal_normal CPT0262150002 CPT0262150002.WholeGenome.RP-1303.bam 75552605388 BAM aligned CPTAC3 a4b6dd61-cd08-4d49-bbf2-d0a99323dca6 320ab01cca65a1d94a9d049816148cb0 {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00807.WGS.Nbc.hg38 C3L-00807 AML WGS buccal_normal CPT0262150002 479d2c1e-82ce-44c1-8ac1-1bb7c4435048_wgs_gdc_realn.bam 110378245946 BAM harmonized CPTAC3 701200bb-b981-401f-8c0f-60733974b257 950cc96697d0d3aaf1f5fa72b09b3b14 {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00807.WGS.Tpb C3L-00807 AML WGS tumor_peripheral_blood CPT0262160002 CPT0262160002.WholeGenome.RP-1303.bam 71785925582 BAM aligned CPTAC3 42fa2d10-0798-4450-99f9-5523b1dacaf3 f8b8557832c1becb0f0a02c9d0ef4e4d {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.WGS.Tpb.hg38 C3L-00807 AML WGS tumor_peripheral_blood CPT0262160002 f1ff1a75-6145-4e73-b317-92ba9804e58d_wgs_gdc_realn.bam 106678655022 BAM harmonized CPTAC3 5301fffb-fbba-437b-8ad1-18d5252a1f8e 1768b5b04585ee6c7771fa9c3e8e550e {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.WXS.Nbc C3L-00807 AML WXS buccal_normal CPT0262150002 CPT0262150002.WholeExome.RP-1303.bam 29123805835 BAM aligned CPTAC3 2f0f63c1-0930-45a3-a092-046a08598b64 8feccc6ae87c9a0623089d29d382d3fc {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00807.WXS.Nbc.hg38 C3L-00807 AML WXS buccal_normal CPT0262150002 479d2c1e-82ce-44c1-8ac1-1bb7c4435048_wxs_gdc_realn.bam 40517157349 BAM harmonized CPTAC3 ed532c19-95de-41e3-91b8-a96ac0770176 a96720a2fbffae073d7cf6e9e15fbf3f {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00807.WXS.Tpb C3L-00807 AML WXS tumor_peripheral_blood CPT0262160002 CPT0262160002.WholeExome.RP-1303.bam 22776600667 BAM aligned CPTAC3 ed7b153a-3881-4a38-a74c-494a31d95ce9 522d8890c9d45055b55eaba1cf4022f4 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00807.WXS.Tpb.hg38 C3L-00807 AML WXS tumor_peripheral_blood CPT0262160002 f1ff1a75-6145-4e73-b317-92ba9804e58d_wxs_gdc_realn.bam 31074696718 BAM harmonized CPTAC3 e06ccd34-1fcb-45f5-9293-08c3bf9e0fd1 4cf08e49edd68a5fda572bec571b17b7 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.MethArray.Green.Tpb C3L-00810 AML Methylation_Array tumor_peripheral_blood CPT0262010002 203561450020_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 50fac287-4b80-4c88-9228-6606228b180c 563edf87c0bd03aea864756944920734 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.MethArray.Red.Tpb C3L-00810 AML Methylation_Array tumor_peripheral_blood CPT0262010002 203561450020_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 dfec6065-90ed-45f0-82c2-bdeb2d62d830 8f6e76ecd74d3ef3fe9b2580227d90de {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.miRNA-Seq.S7_L004_R1.Tpb C3L-00810 AML miRNA-Seq tumor_peripheral_blood CPT0262020002 190813_UNC32-K00270_0196_AH5MCWBBXY_CGTACG_S7_L004_R1_001.unaln.bam 166691946 BAM S7_L004_R1 unaligned CPTAC3 b7eaa002-a923-4f17-ab4b-7c30ea1ea83f 7c98cd13e3c5f7eab37a5ad0adee4019 {"aliquot_tag": "ALQ_f30f5da9", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.miRNA-Seq.Tpb.hg38 C3L-00810 AML miRNA-Seq tumor_peripheral_blood CPT0262020002 fb63b178-fa49-40b5-b159-3829a22d3891_mirnaseq_gdc_realn.bam 193044938 BAM harmonized CPTAC3 3900303f-44f5-476d-b2c8-ba8cac4389c7 6abf7286d1f62af5c6eba4670d787baa {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.RNA-Seq.chimeric.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.chimeric.gdc_realn.bam 33784209 BAM chimeric harmonized CPTAC3 5c37ff33-2e10-48d9-972a-e603591f037a b808e0ba937ef5c93ad0b2478cffd724 {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.RNA-Seq.genomic.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.genomic.gdc_realn.bam 6058300861 BAM genomic harmonized CPTAC3 bfca4bd8-f71a-4221-9c8d-ce5f91c4ed48 9d90974c0fc397a1832478b1701cfc9f {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.RNA-Seq.S16_L004_R1.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R1_001.fastq.gz 2913159678 FASTQ S16_L004_R1 unaligned CPTAC3 bfe8cb7e-970f-4949-ae57-48159f412d82 86a1fa8c6e44654622856f61fdfee4b6 {"aliquot_tag": "ALQ_f30f5da9", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.RNA-Seq.S16_L004_R2.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R2_001.fastq.gz 3160832095 FASTQ S16_L004_R2 unaligned CPTAC3 59239c3a-eb53-418a-9c4d-45f19dfa72d6 4b1435e26eccc4c7cfaae6d530b19ab2 {"aliquot_tag": "ALQ_f30f5da9", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.RNA-Seq.transcriptome.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.transcriptome.gdc_realn.bam 4573701080 BAM transcriptome harmonized CPTAC3 6a8159e8-5c33-4ed1-b363-1b49efcd2ba7 5df28e559088399a3035ef82dc8ac7b7 {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.WGS.Nbc C3L-00810 AML WGS buccal_normal CPT0262000002 CPT0262000002.WholeGenome.RP-1303.bam 80588637814 BAM aligned CPTAC3 d7cf7b44-30e6-476c-bb34-d428a5974d5a 3504cc7a6253e5f83710a5158f502f47 {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00810.WGS.Nbc.hg38 C3L-00810 AML WGS buccal_normal CPT0262000002 a98b51e2-67be-4afb-8bfa-ff5c19ed0b8c_wgs_gdc_realn.bam 117141414310 BAM harmonized CPTAC3 0fad2924-7c7b-4dfe-92b0-bde428f1823a 763cfcf43cf5e5fb07a85490fc245943 {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00810.WGS.Tpb C3L-00810 AML WGS tumor_peripheral_blood CPT0262010002 CPT0262010002.WholeGenome.RP-1303.bam 72142513624 BAM aligned CPTAC3 de0973e4-f656-4983-b48c-2141bb0ce061 4f7ebedee9ada0487c970a0190cf5745 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.WGS.Tpb.hg38 C3L-00810 AML WGS tumor_peripheral_blood CPT0262010002 416ca4c8-5a7e-4aeb-a376-321e8fe88a51_wgs_gdc_realn.bam 103985892606 BAM harmonized CPTAC3 a0fa533d-0c42-4be2-aeab-5fe971c6bd0b 019bff3a8282bf32fee3b0bebf841349 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.WXS.Nbc C3L-00810 AML WXS buccal_normal CPT0262000002 CPT0262000002.WholeExome.RP-1303.bam 25128191741 BAM aligned CPTAC3 d0e0d23d-ccc6-4dca-9129-d939fb0c0747 07c72d7edcbb770914d0d69fa9d40a5f {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00810.WXS.Nbc.hg38 C3L-00810 AML WXS buccal_normal CPT0262000002 a98b51e2-67be-4afb-8bfa-ff5c19ed0b8c_wxs_gdc_realn.bam 34749647940 BAM harmonized CPTAC3 95b24b1e-a608-40d0-ae95-f20672efac6d 1047a328721c05d416c80f8232f7b6e8 {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-00810.WXS.Tpb C3L-00810 AML WXS tumor_peripheral_blood CPT0262010002 CPT0262010002.WholeExome.RP-1303.bam 22135928415 BAM aligned CPTAC3 40e7013c-e358-4709-82fa-3a636d78a2cb 76402bcff328f0a7aa8b4e2b1d0f3937 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00810.WXS.Tpb.hg38 C3L-00810 AML WXS tumor_peripheral_blood CPT0262010002 416ca4c8-5a7e-4aeb-a376-321e8fe88a51_wxs_gdc_realn.bam 29913315490 BAM harmonized CPTAC3 cd4b8592-4d3e-4d27-84e8-14adcbffb9d1 cc3dd39d78f60bc4eb82a28dd73ac84b {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-00812.MethArray.Green.T C3L-00812 CCRCC Methylation_Array tumor CPT0025350009 202184900149_R02C01_Grn.idat 13676256 IDAT Green NA CPTAC3 9c002298-3da4-40ce-a41e-d5425f821e00 9143d8df043be7c8319b407812675ce3 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor"} -C3L-00812.MethArray.Red.T C3L-00812 CCRCC Methylation_Array tumor CPT0025350009 202184900149_R02C01_Red.idat 13676256 IDAT Red NA CPTAC3 9d1f5316-2e3c-4786-a9fc-0c996aee078b ffdb1e7965d867d504b7c48722ce0e63 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor"} -C3L-00812.miRNA-Seq.S5_L003_R1.T C3L-00812 CCRCC miRNA-Seq tumor CPT0025350006 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L003_R1_001.unaln.bam 250037965 BAM S5_L003_R1 unaligned CPTAC3 fa22b9bf-14a8-40e4-a9a9-586049f1f3f1 57374c28a0d78d1e02e911b85eb4d234 {"aliquot_tag": "ALQ_afcd2ffc", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00812.miRNA-Seq.T.hg38 C3L-00812 CCRCC miRNA-Seq tumor CPT0025350006 94abf4fb-3d8f-49c5-94ba-fede597f1f03_mirnaseq_gdc_realn.bam 279250047 BAM harmonized CPTAC3 2121ec54-c1fb-44b5-bbd2-6aab2b5525a8 d774296caa08c50572ac9c20b46e16e1 {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor"} -C3L-00812.RNA-Seq.chimeric.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.chimeric.gdc_realn.bam 66262745 BAM chimeric harmonized CPTAC3 c16178d5-8570-4140-868b-3ff2d5095149 b37d1fb2e49512e306bf32e8da2f853f {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor"} -C3L-00812.RNA-Seq.genomic.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.genomic.gdc_realn.bam 8200783169 BAM genomic harmonized CPTAC3 610fc761-4059-4aa4-92e4-6697715ffe32 28e76aa3fbd287ad95fccd9b3422279d {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor"} -C3L-00812.RNA-Seq.S5_L007_R1.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R1_001.fastq.gz 3612405094 FASTQ S5_L007_R1 unaligned CPTAC3 abf42781-c4d0-4a52-b329-8de564805f8b a5cc76493fc2cdcd2eff8488b2fe4de2 {"aliquot_tag": "ALQ_afcd2ffc", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00812.RNA-Seq.S5_L007_R2.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R2_001.fastq.gz 3957100302 FASTQ S5_L007_R2 unaligned CPTAC3 e3515d50-bb69-4fb5-89f7-441d3db64a27 046424cf21232c1d12431dc25ed7d571 {"aliquot_tag": "ALQ_afcd2ffc", "sample": "S5", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00812.RNA-Seq.transcriptome.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.transcriptome.gdc_realn.bam 9358430075 BAM transcriptome harmonized CPTAC3 3a4e0cef-744e-424a-a447-bfdf72b7d0b4 bc6828684cd576dd61881d97999432ec {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor"} -C3L-00812.WGS.N C3L-00812 CCRCC WGS blood_normal CPT0029480002 CPT0029480002.WholeGenome.RP-1303.bam 59951874176 BAM aligned CPTAC3 317bf541-ff75-4160-b7a3-3f40e0a6dba1 020d386009ba09c7bce6a4aee221f382 {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal"} -C3L-00812.WGS.N.hg38 C3L-00812 CCRCC WGS blood_normal CPT0029480002 eef37503-1d13-474e-a21e-14f85891bfb6_gdc_realn.bam 86532498944 BAM harmonized CPTAC3 7ee344ee-0ee5-450d-a98f-59ea2d43bfed c0c38aead18e3f88730766f46ac26bba {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal"} -C3L-00812.WGS.T C3L-00812 CCRCC WGS tumor CPT0025350009 CPT0025350009.WholeGenome.RP-1303.bam 75172277693 BAM aligned CPTAC3 56e33164-49f8-4ccd-ac01-9ac87513740c 38979c6db969e1eeaed15aa5f8ced2e8 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor"} -C3L-00812.WGS.T.hg38 C3L-00812 CCRCC WGS tumor CPT0025350009 b00a1765-5cf8-4aba-a08e-93084f908210_gdc_realn.bam 109260393866 BAM harmonized CPTAC3 74f2bc12-d0cf-4af4-a8be-759799d519a7 db6a2032a3d16a34bfe8a5278ea79f68 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor"} -C3L-00812.WXS.N C3L-00812 CCRCC WXS blood_normal CPT0029480002 CPT0029480002.WholeExome.RP-1303.bam 24330564906 BAM aligned CPTAC3 fedb2686-52a2-42d4-a35b-d9baa00a8a86 debde633bac5c28a263d1a897bc021c0 {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal"} -C3L-00812.WXS.N.hg38 C3L-00812 CCRCC WXS blood_normal CPT0029480002 eef37503-1d13-474e-a21e-14f85891bfb6_gdc_realn.bam 34054782081 BAM harmonized CPTAC3 50ce4759-7b32-46df-a29b-85f815322c83 a5936d1595b2a041f6867354d51bd55a {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal"} -C3L-00812.WXS.T C3L-00812 CCRCC WXS tumor CPT0025350009 CPT0025350009.WholeExome.RP-1303.bam 22047195802 BAM aligned CPTAC3 2cc11eaa-9599-4654-8e07-00e4fa0dc828 4e67ddac1f774904e380cc467260b3ed {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor"} -C3L-00812.WXS.T.hg38 C3L-00812 CCRCC WXS tumor CPT0025350009 b00a1765-5cf8-4aba-a08e-93084f908210_gdc_realn.bam 30188260694 BAM harmonized CPTAC3 cd47be26-4d00-4834-92bc-7aa9331ff9df b1160405a2ae906877ea1b7273a525bc {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor"} -C3L-00813.MethArray.Green.T C3L-00813 CCRCC Methylation_Array tumor CPT0015810013 202176290145_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6c52c574-51e0-4c7c-a61c-aa9e75b3d61f a0448bd68cd31687add96f2e11c18549 {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor"} -C3L-00813.MethArray.Red.T C3L-00813 CCRCC Methylation_Array tumor CPT0015810013 202176290145_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 97e3585a-b426-4bd0-a256-72411ee2cd8b 62ee257ebf5fe84ce4540a4a5cef76b1 {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor"} -C3L-00813.miRNA-Seq.S16_L001_R1.T C3L-00813 CCRCC miRNA-Seq tumor CPT0015810009 181113_UNC31-K00269_0164_AH23NNBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 224887107 BAM S16_L001_R1 unaligned CPTAC3 8d127064-4c1c-4121-a39e-6548377381f7 4fd52da108f6d198ad26f9ccb6d6f676 {"aliquot_tag": "ALQ_2eba638d", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00813.miRNA-Seq.T.hg38 C3L-00813 CCRCC miRNA-Seq tumor CPT0015810009 96e347cf-b5c6-46af-a8c6-8ffc8cb0288e_mirnaseq_gdc_realn.bam 254067251 BAM harmonized CPTAC3 6af3875d-53e6-41dd-af28-77921b289be5 d17892b1c4da0cc381cf0c5c5b1abea2 {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor"} -C3L-00813.RNA-Seq.chimeric.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.chimeric.gdc_realn.bam 61593527 BAM chimeric harmonized CPTAC3 04200873-03c3-482f-b737-a2701fdc6561 2d21053528fb9290e7d442837b8e9d81 {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor"} -C3L-00813.RNA-Seq.genomic.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.genomic.gdc_realn.bam 7978272108 BAM genomic harmonized CPTAC3 fc92ce18-2a1d-44f7-bd47-b01a9b0440ca 5b5d3df5048092e6ea8977365a70cb1c {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor"} -C3L-00813.RNA-Seq.S7_L002_R1.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R1_001.fastq.gz 3946073267 FASTQ S7_L002_R1 unaligned CPTAC3 a117dea5-d8bb-459c-bc39-6f343d8d5b72 8a35a64608d5091d5f0740620827b370 {"aliquot_tag": "ALQ_2eba638d", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00813.RNA-Seq.S7_L002_R2.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R2_001.fastq.gz 4283241334 FASTQ S7_L002_R2 unaligned CPTAC3 834c6145-bfcf-4387-9477-668190a210d3 1a3e6cd526c49d49c885118989e9f974 {"aliquot_tag": "ALQ_2eba638d", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00813.RNA-Seq.transcriptome.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.transcriptome.gdc_realn.bam 11836945306 BAM transcriptome harmonized CPTAC3 040ea4d1-2c07-4980-acbc-22b349903c5d 9906dd195631e15ac92e98a1f28fe47f {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor"} -C3L-00813.WGS.N C3L-00813 CCRCC WGS blood_normal CPT0018370002 CPT0018370002.WholeGenome.RP-1303.bam 70121087469 BAM aligned CPTAC3 d30961cd-9174-4858-8fcb-90a118c0db08 fbc3766fc88cf1e4cc89ac74eb05528d {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00813.WGS.N.hg38 C3L-00813 CCRCC WGS blood_normal CPT0018370002 0bbc61b3-23ba-496e-a17b-742f0fd3c780_gdc_realn.bam 111257920827 BAM harmonized CPTAC3 792744c0-d9c5-4271-a6a7-8fe408482ff2 9224c85a13f920c3564420ede78b14df {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00813.WGS.T C3L-00813 CCRCC WGS tumor CPT0015810013 CPT0015810013.WholeGenome.RP-1303.bam 62869567864 BAM aligned CPTAC3 e109d012-510d-4963-9e27-93e66afa83b0 362dbcb37234b07a6bd093c069b3044b {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor"} -C3L-00813.WGS.T.hg38 C3L-00813 CCRCC WGS tumor CPT0015810013 72ea324c-4896-476d-9083-b68b4858a157_gdc_realn.bam 94010650600 BAM harmonized CPTAC3 ee8d8148-4eb3-4858-b4b2-e27cef547c9c 3508251fa4c8792041418aab65c7886e {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor"} -C3L-00813.WXS.N C3L-00813 CCRCC WXS blood_normal CPT0018370002 CPT0018370002.WholeExome.RP-1303.bam 26260258076 BAM aligned CPTAC3 0a5fb154-0fef-4420-99fa-ab9bd0eb0ec6 2c1aae9074482f00d1afbde17f0a494b {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00813.WXS.N.hg38 C3L-00813 CCRCC WXS blood_normal CPT0018370002 0bbc61b3-23ba-496e-a17b-742f0fd3c780_gdc_realn.bam 35090202937 BAM harmonized CPTAC3 9fe97cd7-d49a-45db-af65-a0a28862b539 5d7dd205740be158d577efea3f350fae {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00813.WXS.T C3L-00813 CCRCC WXS tumor CPT0015810013 CPT0015810013.WholeExome.RP-1303.bam 36899336702 BAM aligned CPTAC3 228d94be-09e4-49b9-a93b-ba46bd521397 7b77dbb331b094c7efae701eb04b147d {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor"} -C3L-00813.WXS.T.hg38 C3L-00813 CCRCC WXS tumor CPT0015810013 72ea324c-4896-476d-9083-b68b4858a157_gdc_realn.bam 52374356457 BAM harmonized CPTAC3 72b80bc9-60ad-49fd-96e1-811ffb846fa8 581f6608660f251ecbe3d0791d2e0fd2 {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor"} -C3L-00814.MethArray.Green.A C3L-00814 CCRCC Methylation_Array tissue_normal CPT0065820009 204930640064_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9b88da7d-981a-439f-a0be-ec8b93ab044d f45f9e06579e2c98e6bfc80067b45adb {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.MethArray.Green.T C3L-00814 CCRCC Methylation_Array tumor CPT0065810009 202163530118_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 9de8b8d5-ba07-4de2-b3f7-706e57bbc2c8 aff34a6a40bca7b3ad516089a71e3766 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor"} -C3L-00814.MethArray.Red.A C3L-00814 CCRCC Methylation_Array tissue_normal CPT0065820009 204930640064_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 60197d69-056f-40ed-b3c6-0fda30cb672b 01e12e691307c5d2794f20362b7656bf {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.MethArray.Red.T C3L-00814 CCRCC Methylation_Array tumor CPT0065810009 202163530118_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 4ab9c2b1-15db-4bcc-80a8-6e2fe752c7d9 cae8af198b88fdc00b5d94a8bcd1e155 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor"} -C3L-00814.miRNA-Seq.A.hg38 C3L-00814 CCRCC miRNA-Seq tissue_normal CPT0065820006 9478b81c-4959-4780-b5e1-57ea6bfb5c6b_mirnaseq_gdc_realn.bam 195255300 BAM harmonized CPTAC3 f8726fb5-f22a-4b0b-be5c-a60956a97a06 fada1ba07c45562f6bcb4fe2dec93bdb {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.miRNA-Seq.S8_L001_R1.T C3L-00814 CCRCC miRNA-Seq tumor CPT0065810006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L001_R1_001.unaln.bam 160101992 BAM S8_L001_R1 unaligned CPTAC3 ed1fbc80-6ea2-4466-8730-0e0b3c5ec0b9 a318ca619cd7b80a831b10a9346bfb31 {"aliquot_tag": "ALQ_b4c07705", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00814.miRNA-Seq.S9_L003_R1.A C3L-00814 CCRCC miRNA-Seq tissue_normal CPT0065820006 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L003_R1_001.unaln.bam 179140511 BAM S9_L003_R1 unaligned CPTAC3 b9bd98bd-c506-4103-8682-be9a52a1035f 58f302c7efdeeae8ff91533ef4547f49 {"aliquot_tag": "ALQ_f3600dd5", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.miRNA-Seq.T.hg38 C3L-00814 CCRCC miRNA-Seq tumor CPT0065810006 511b4c0c-e2e6-4a9f-aa8e-917474e1751a_mirnaseq_gdc_realn.bam 176374221 BAM harmonized CPTAC3 468554f1-be76-4a7d-b35d-1287f9454487 24b293d977f1d82df325f1f647c9f006 {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor"} -C3L-00814.RNA-Seq.chimeric.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.chimeric.gdc_realn.bam 41540068 BAM chimeric harmonized CPTAC3 6eeba53f-ec0f-4fc1-91aa-fb85346b9a88 ffe100853daf8804c84348754aa44ac7 {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.RNA-Seq.chimeric.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.chimeric.gdc_realn.bam 31329232 BAM chimeric harmonized CPTAC3 6810b495-6b67-433b-9663-5243b3c05fb0 5c8b28f79e0846fe23779fdf7d764641 {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor"} -C3L-00814.RNA-Seq.genomic.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.genomic.gdc_realn.bam 7499589853 BAM genomic harmonized CPTAC3 ebd9749b-c0fd-4e43-8ce7-0ca8e93bda45 3cd956357872c81f5d13472c42edef51 {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.RNA-Seq.genomic.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.genomic.gdc_realn.bam 7535796418 BAM genomic harmonized CPTAC3 59c383ee-a015-484b-9533-97e868305503 ec1e065f6c087585a6f4941a7bc2537e {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor"} -C3L-00814.RNA-Seq.S15_L004_R1.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R1_001.fastq.gz 3709278929 FASTQ S15_L004_R1 unaligned CPTAC3 39918e6c-f138-416c-b920-ad55050089e9 2d0ffb776bf851cdd877b22544693fa7 {"aliquot_tag": "ALQ_b4c07705", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00814.RNA-Seq.S15_L004_R2.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R2_001.fastq.gz 3989624906 FASTQ S15_L004_R2 unaligned CPTAC3 de1b355e-e95d-4d9e-b78d-1158f45d334a 4496183825d92ca20d99c72709954e39 {"aliquot_tag": "ALQ_b4c07705", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00814.RNA-Seq.S17_L005_R1.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R1_001.fastq.gz 3652042216 FASTQ S17_L005_R1 unaligned CPTAC3 37f96ce9-71ea-4623-821b-3a70e23ca2ec 1a42796668b7be956c9b7680e8cba0c4 {"aliquot_tag": "ALQ_f3600dd5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.RNA-Seq.S17_L005_R2.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R2_001.fastq.gz 4004692485 FASTQ S17_L005_R2 unaligned CPTAC3 9af9f0fe-0a10-4b2d-90fc-74d26a2c4766 7b7cccb26aeb1bb3285119cdd20b8b41 {"aliquot_tag": "ALQ_f3600dd5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.RNA-Seq.transcriptome.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.transcriptome.gdc_realn.bam 9173524185 BAM transcriptome harmonized CPTAC3 979c4778-1ba1-43ba-b6d8-f82184438e92 d30be2ed04c71c24842684371f584183 {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.RNA-Seq.transcriptome.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.transcriptome.gdc_realn.bam 10398097711 BAM transcriptome harmonized CPTAC3 9a1eef21-784f-4a54-88e7-4e7732fe9575 fdb48bd768465f6a4f9393c87980a1e0 {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor"} -C3L-00814.WGS.A C3L-00814 CCRCC WGS tissue_normal CPT0065820009 CPT0065820009.WholeGenome.RP-1303.bam 58881456077 BAM aligned CPTAC3 1c3c83d8-d68f-4fa9-8d02-6085ba865e71 b30c628f7965a3f1a6ee7c634d1ac326 {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.WGS.A.hg38 C3L-00814 CCRCC WGS tissue_normal CPT0065820009 20cace74-309d-4fb2-9fc3-f84353279a68_wgs_gdc_realn.bam 86709582133 BAM harmonized CPTAC3 54b744e5-fe56-484b-9ea4-524fd9f80618 eebfdd6e57e73a6defdc432aadf275c6 {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.WGS.N C3L-00814 CCRCC WGS blood_normal CPT0067690002 CPT0067690002.WholeGenome.RP-1303.bam 83902431250 BAM aligned CPTAC3 e209c1ff-90ad-4051-92d9-a81f18629db4 83217d52bcd3b9a6e4a111821b346e3d {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal"} -C3L-00814.WGS.N.hg38 C3L-00814 CCRCC WGS blood_normal CPT0067690002 b43ccc67-58a3-4638-acfa-b59101456087_gdc_realn.bam 126492416442 BAM harmonized CPTAC3 ec37c8d6-0724-46b6-b268-9901a9f66c31 c389235b35f68d7d70da6bb325bc6f46 {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal"} -C3L-00814.WGS.T C3L-00814 CCRCC WGS tumor CPT0065810009 CPT0065810009.WholeGenome.RP-1303.bam 72146434732 BAM aligned CPTAC3 7134050c-931f-4511-99f6-f604d79bdfef b92993a02b8dd19ba6f3486ff055eff0 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor"} -C3L-00814.WGS.T.hg38 C3L-00814 CCRCC WGS tumor CPT0065810009 6f1646a7-8d91-43c9-8419-d296bbcc8d8a_gdc_realn.bam 107345027299 BAM harmonized CPTAC3 d0a9421e-60aa-4111-88b1-5803bb5dbb17 5ddc87e4638669b4ae4f3722221c1a4d {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor"} -C3L-00814.WXS.A C3L-00814 CCRCC WXS tissue_normal CPT0065820009 CPT0065820009.WholeExome.RP-1303.bam 35875777194 BAM aligned CPTAC3 49d17b8a-0ffe-4ef7-b273-66cb6ddd9145 d962ee61daa6fc22de529f22d7c6a2eb {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.WXS.A.hg38 C3L-00814 CCRCC WXS tissue_normal CPT0065820009 20cace74-309d-4fb2-9fc3-f84353279a68_wxs_gdc_realn.bam 47751031748 BAM harmonized CPTAC3 2bf925ad-7db0-473b-a0fc-5c72735642df df855e5b4819d083d5480cee624d2881 {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00814.WXS.N C3L-00814 CCRCC WXS blood_normal CPT0067690002 CPT0067690002.WholeExome.RP-1303.bam 39169511337 BAM aligned CPTAC3 c3ff1d40-0d4e-463a-a696-58ead61b586b 35057c0d98f3b7820cd0157679d376f1 {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal"} -C3L-00814.WXS.N.hg38 C3L-00814 CCRCC WXS blood_normal CPT0067690002 b43ccc67-58a3-4638-acfa-b59101456087_gdc_realn.bam 54241635583 BAM harmonized CPTAC3 8660d0f5-aeaf-4fbd-9a83-9bfb0ab32442 9236d7a4542846c2924c9f446c53d2bc {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal"} -C3L-00814.WXS.T C3L-00814 CCRCC WXS tumor CPT0065810009 CPT0065810009.WholeExome.RP-1303.bam 31409743304 BAM aligned CPTAC3 eb49b605-f187-49e7-9d75-d9759162b195 489a07e3ecb3a0760ec996daa615c70b {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor"} -C3L-00814.WXS.T.hg38 C3L-00814 CCRCC WXS tumor CPT0065810009 6f1646a7-8d91-43c9-8419-d296bbcc8d8a_gdc_realn.bam 44268563558 BAM harmonized CPTAC3 1abd1b8e-e04c-4cd8-ab14-a4b2c8ddec89 d1e3efac997e184ac70ce3e79291c427 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor"} -C3L-00815.MethArray.Green.T C3L-00815 CCRCC Methylation_Array tumor CPT0085730009 202176290095_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1e89e884-25c6-402c-9ddd-910244cb8436 e0a47a9388bf56ee6d704b2686891960 {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor"} -C3L-00815.MethArray.Red.T C3L-00815 CCRCC Methylation_Array tumor CPT0085730009 202176290095_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 3f604877-5694-4114-a757-3893ac4e135f 1fa7d1976c637e255826ceb62daa6ae3 {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor"} -C3L-00815.miRNA-Seq.S4_L008_R1.T C3L-00815 CCRCC miRNA-Seq tumor CPT0085730006 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L008_R1_001.unaln.bam 227973893 BAM S4_L008_R1 unaligned CPTAC3 e6c9171d-7dc0-43e9-93fe-7d0b98ef6d6b 4bd69a5e4a66d9846b5acb39814c5ff9 {"aliquot_tag": "ALQ_2adc8482", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00815.miRNA-Seq.T.hg38 C3L-00815 CCRCC miRNA-Seq tumor CPT0085730006 12c50653-4b54-401e-bb6b-fc87aad92208_mirnaseq_gdc_realn.bam 244333825 BAM harmonized CPTAC3 4c3b43b3-da00-493c-a7d0-94ac6258a23d b721b0ec69cfd00aac2489120db8707a {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor"} -C3L-00815.RNA-Seq.chimeric.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.chimeric.gdc_realn.bam 42879216 BAM chimeric harmonized CPTAC3 328186b1-03a3-47ea-a5f9-41f0119bee9b 6266caabf77cf098069c94358a708284 {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor"} -C3L-00815.RNA-Seq.genomic.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.genomic.gdc_realn.bam 9766323011 BAM genomic harmonized CPTAC3 a9dd1414-1baf-4974-975b-9fe3f288e02f f8f3cfa3c8dbc8451994c162ecbc42ea {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor"} -C3L-00815.RNA-Seq.S6_L002_R1.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4856376651 FASTQ S6_L002_R1 unaligned CPTAC3 2ff4b902-07d3-45ad-a880-5808b1b9d437 d9180e8304f2ba38ebe776d72e69d946 {"aliquot_tag": "ALQ_2adc8482", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00815.RNA-Seq.S6_L002_R2.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R2_001.fastq.gz 5336892992 FASTQ S6_L002_R2 unaligned CPTAC3 1e009da5-b71d-4d50-80e6-f002f6ccd12e 25b2f70e5c1df404322ff8c12f304026 {"aliquot_tag": "ALQ_2adc8482", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00815.RNA-Seq.transcriptome.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.transcriptome.gdc_realn.bam 14061603448 BAM transcriptome harmonized CPTAC3 cc671560-e75a-46d2-b915-1f10bf645d43 62d0f8f17a32159a1908de22cc2bb4fa {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor"} -C3L-00815.WGS.N C3L-00815 CCRCC WGS blood_normal CPT0086630002 CPT0086630002.WholeGenome.RP-1303.bam 85458167247 BAM aligned CPTAC3 cac10480-9df6-408b-8523-430d5ad8a090 4c6b22f38e31cd67694673fb2388e30d {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00815.WGS.N.hg38 C3L-00815 CCRCC WGS blood_normal CPT0086630002 ddeb7283-32f0-4c57-82df-5ab00872ee85_gdc_realn.bam 127875515573 BAM harmonized CPTAC3 8818b1b6-0755-4b63-a605-3bc287c78736 23575c65dab0a9d364ffcb3731a885cf {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00815.WGS.T C3L-00815 CCRCC WGS tumor CPT0085730009 CPT0085730009.WholeGenome.RP-1303.bam 66865376825 BAM aligned CPTAC3 a32ab6f5-3ac7-4b24-9f2e-667e738b906b 4d17141e93021e60d7ac8fa971e1aebc {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor"} -C3L-00815.WGS.T.hg38 C3L-00815 CCRCC WGS tumor CPT0085730009 537cf171-816c-4aa5-a19a-874cebf60b29_gdc_realn.bam 99213229185 BAM harmonized CPTAC3 86c9916f-ba15-4ac5-9560-579568e81527 6a6f52d33fa3373e06dc8cfda678c90d {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor"} -C3L-00815.WXS.N C3L-00815 CCRCC WXS blood_normal CPT0086630002 CPT0086630002.WholeExome.RP-1303.bam 32563146603 BAM aligned CPTAC3 37814fbd-e2aa-48db-8389-b880add2cc2e af234a5d45f72edcfa18f3c51a3d6665 {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00815.WXS.N.hg38 C3L-00815 CCRCC WXS blood_normal CPT0086630002 ddeb7283-32f0-4c57-82df-5ab00872ee85_gdc_realn.bam 44563181263 BAM harmonized CPTAC3 c3779695-f6f6-4f42-a0a5-c09fc064b89e 135fe406459a79f8faf467cfdef50f65 {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal"} -C3L-00815.WXS.T C3L-00815 CCRCC WXS tumor CPT0085730009 CPT0085730009.WholeExome.RP-1303.bam 37682615581 BAM aligned CPTAC3 38362fc4-23fa-46ac-aaca-d1955f189548 f16fc527c8aa5fdf67546d27cb174a72 {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor"} -C3L-00815.WXS.T.hg38 C3L-00815 CCRCC WXS tumor CPT0085730009 537cf171-816c-4aa5-a19a-874cebf60b29_gdc_realn.bam 52175705196 BAM harmonized CPTAC3 b4c401c4-da2e-458e-883e-798c51e12ac3 0c00f1e52da97e2d87957734ee9e281f {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor"} -C3L-00817.MethArray.Green.T C3L-00817 CCRCC Methylation_Array tumor CPT0065870009 202184900111_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 0d6ae836-f2b9-4aab-9bf2-613cb6157a3c fdf04bb41764d25c26e2681cec774be1 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor"} -C3L-00817.MethArray.Red.T C3L-00817 CCRCC Methylation_Array tumor CPT0065870009 202184900111_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 4a67b550-4110-409c-8ea9-5ebf21a34770 bc72e668882414e280f71fd25b3c7016 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor"} -C3L-00817.miRNA-Seq.S9_L001_R1.T C3L-00817 CCRCC miRNA-Seq tumor CPT0065870006 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L001_R1_001.unaln.bam 193820422 BAM S9_L001_R1 unaligned CPTAC3 cb545abc-4114-4447-a42f-f050bd961856 2e0da21febf7952fdd7142daf229f1eb {"aliquot_tag": "ALQ_3b8082a5", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00817.miRNA-Seq.T.hg38 C3L-00817 CCRCC miRNA-Seq tumor CPT0065870006 ed31bdbf-f13f-4d3a-bd4c-e6ed56bcda7a_mirnaseq_gdc_realn.bam 214421811 BAM harmonized CPTAC3 e9758466-aebc-45ad-b315-00db376791fe c2571cab51d546f409c6a98bd03f624e {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor"} -C3L-00817.RNA-Seq.chimeric.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.chimeric.gdc_realn.bam 30121023 BAM chimeric harmonized CPTAC3 664e5354-9e87-410b-9ccc-1819c5f48061 52d029fecfdb7686438be0fc199cb092 {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor"} -C3L-00817.RNA-Seq.genomic.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.genomic.gdc_realn.bam 7843937519 BAM genomic harmonized CPTAC3 7cfee693-b15f-4961-bf83-b53b804d1ca5 5e8b723fa086487918a07efc9d7dd4e8 {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor"} -C3L-00817.RNA-Seq.S14_L004_R1.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R1_001.fastq.gz 3900525958 FASTQ S14_L004_R1 unaligned CPTAC3 62cf4129-5b75-4b79-b8b8-1a6419447193 b22e173e5615aa92300bf86e163afcd1 {"aliquot_tag": "ALQ_3b8082a5", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00817.RNA-Seq.S14_L004_R2.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R2_001.fastq.gz 4207616546 FASTQ S14_L004_R2 unaligned CPTAC3 a50f0fbc-6696-4221-87c8-5189b3b668e0 eca75bf307831c9d48d1bb3a8867e04b {"aliquot_tag": "ALQ_3b8082a5", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00817.RNA-Seq.transcriptome.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.transcriptome.gdc_realn.bam 10130355545 BAM transcriptome harmonized CPTAC3 ec8da02d-9626-4c16-882f-e85330146dc2 be106d148dee5347698ea0fda36b2436 {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor"} -C3L-00817.WGS.N C3L-00817 CCRCC WGS blood_normal CPT0067710002 CPT0067710002.WholeGenome.RP-1303.bam 74356696274 BAM aligned CPTAC3 468234ba-5e33-40f9-820b-25fbea5d3638 0f5078147712598d77a0ef9408c1bf61 {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00817.WGS.N.hg38 C3L-00817 CCRCC WGS blood_normal CPT0067710002 cb8f35b5-827c-471e-8b72-b9430f2df9a7_gdc_realn.bam 112200297661 BAM harmonized CPTAC3 02393fcd-7994-41be-abc4-28cf5c63d384 36d6dac6266fc6ee6c6022a462209a46 {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00817.WGS.T C3L-00817 CCRCC WGS tumor CPT0065870009 CPT0065870009.WholeGenome.RP-1303.bam 71253608870 BAM aligned CPTAC3 032d7376-9bf2-4042-b3d6-fbf2db60bd5d 104d88d2b1e2e41fbf212a3f0a7d5337 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor"} -C3L-00817.WGS.T.hg38 C3L-00817 CCRCC WGS tumor CPT0065870009 4f0458b3-ec64-40f2-9332-0a3ecc0ddf46_gdc_realn.bam 107152169446 BAM harmonized CPTAC3 dae673f2-f8f8-439b-b914-961734f38857 35e49c0a8a7b67595f464c74719be7e1 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor"} -C3L-00817.WXS.N C3L-00817 CCRCC WXS blood_normal CPT0067710002 CPT0067710002.WholeExome.RP-1303.bam 25525067199 BAM aligned CPTAC3 fb6cf86f-3e44-45b0-bc4c-35ad27b756be ecb19c5f45ba9780d207c0758faacc5e {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00817.WXS.N.hg38 C3L-00817 CCRCC WXS blood_normal CPT0067710002 cb8f35b5-827c-471e-8b72-b9430f2df9a7_gdc_realn.bam 34524671166 BAM harmonized CPTAC3 672f5d93-b536-4613-8a48-ec5cbfaec36f d6cee80aa8eb20f4957ebaf7d45a65c7 {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00817.WXS.T C3L-00817 CCRCC WXS tumor CPT0065870009 CPT0065870009.WholeExome.RP-1303.bam 29133509940 BAM aligned CPTAC3 2f1f0ba1-57ab-4216-b904-173923492ce1 e65371f9486ca98d889dead371b576c5 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor"} -C3L-00817.WXS.T.hg38 C3L-00817 CCRCC WXS tumor CPT0065870009 4f0458b3-ec64-40f2-9332-0a3ecc0ddf46_gdc_realn.bam 39832687866 BAM harmonized CPTAC3 5306b8f7-ea8b-4305-9958-c8a8e7f41cb9 b31cfe47aa0c1fdf8702f10857c09022 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor"} -C3L-00819.MethArray.Green.A C3L-00819 PDA Methylation_Array tissue_normal CPT0064110009 203561450062_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 140c9080-35b4-4777-ab78-4341639f0803 a010f58c8fc98e3bc787f6fc2efb200a {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.MethArray.Green.T C3L-00819 PDA Methylation_Array tumor CPT0064090006 202163530120_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 73d82ed8-9a69-4936-b6e0-ddda701f3984 166f12872e1800c34ae77a5c30a74441 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor"} -C3L-00819.MethArray.Red.A C3L-00819 PDA Methylation_Array tissue_normal CPT0064110009 203561450062_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5722fef-5183-464a-9be6-13e908273eee 1a1520fea5beb030e58dc7aeba3b1260 {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.MethArray.Red.T C3L-00819 PDA Methylation_Array tumor CPT0064090006 202163530120_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 6bf63db9-982a-4c6f-ae9f-192ef652b68b 14401a3be64ba9866a2e4ea0eb64398e {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor"} -C3L-00819.miRNA-Seq.A.hg38 C3L-00819 PDA miRNA-Seq tissue_normal CPT0064110006 2bc43f48-0905-4772-8196-4c44362af840_mirnaseq_gdc_realn.bam 292007947 BAM harmonized CPTAC3 780854af-cb5b-4a9d-9266-5aa19b9092e4 e5eaa903890cd4d02e4cc4937a518018 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.miRNA-Seq.S1_L001_R1.T C3L-00819 PDA miRNA-Seq tumor CPT0064090009 181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L001_R1_001.unaln.bam 255318469 BAM S1_L001_R1 unaligned CPTAC3 fca7cf7d-9e91-47b6-aee9-286bb135a755 f91837f7805dd4c5434ef183d7896f11 {"aliquot_tag": "ALQ_5e2ba88c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00819.miRNA-Seq.S3_L001_R1.A C3L-00819 PDA miRNA-Seq tissue_normal CPT0064110006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 262846131 BAM S3_L001_R1 unaligned CPTAC3 40063f7a-e927-4f97-8e89-99ee4edce0a3 7398236dae7711ca8d9838f715636848 {"aliquot_tag": "ALQ_35b82d79", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.miRNA-Seq.T.hg38 C3L-00819 PDA miRNA-Seq tumor CPT0064090009 83b73a69-429c-4bcd-a1a3-b10278a2bbaa_mirnaseq_gdc_realn.bam 287605283 BAM harmonized CPTAC3 482a084e-1b7c-454d-a2f1-3d750ca9b21e a3a430091246c131c32f9c49996ee2ee {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor"} -C3L-00819.RNA-Seq.chimeric.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.chimeric.gdc_realn.bam 112422623 BAM chimeric harmonized CPTAC3 79f1cc17-4a16-47b6-9574-6d7921c58cd0 0ef310deddbc4519a8bb94108fe12567 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.RNA-Seq.chimeric.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.chimeric.gdc_realn.bam 33273642 BAM chimeric harmonized CPTAC3 cb78cfff-2e67-46ad-af4a-00972028b93f b45cef61a588963c90615e57300742c8 {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor"} -C3L-00819.RNA-Seq.genomic.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.genomic.gdc_realn.bam 8365765141 BAM genomic harmonized CPTAC3 bb19aa2d-af49-4925-b0d8-a4e2f4168ebf d9a3dd903584bfc3a607a9c2da848f04 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.RNA-Seq.genomic.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.genomic.gdc_realn.bam 8581491176 BAM genomic harmonized CPTAC3 ee03dd97-2d6d-4f60-977d-f9694141cc88 480ee434035214cd608f45b69e218074 {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor"} -C3L-00819.RNA-Seq.S10_L008_R1.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R1_001.fastq.gz 3659327584 FASTQ S10_L008_R1 unaligned CPTAC3 75647260-8a87-4afb-80d6-c24bceee3d65 007731421183be2dec77f7bd8dde346d {"aliquot_tag": "ALQ_35b82d79", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.RNA-Seq.S10_L008_R2.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R2_001.fastq.gz 4213337668 FASTQ S10_L008_R2 unaligned CPTAC3 dbabf608-5e8b-4202-916e-d6ed4b3015d2 2e8cef57f6756131748974946f465167 {"aliquot_tag": "ALQ_35b82d79", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.RNA-Seq.S1_L006_R1.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R1_001.fastq.gz 4041893731 FASTQ S1_L006_R1 unaligned CPTAC3 314fa25c-3fa1-406b-a83e-184923a9a843 c274b755280b79070cb4cb06b8c52dad {"aliquot_tag": "ALQ_5e2ba88c", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00819.RNA-Seq.S1_L006_R2.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R2_001.fastq.gz 4418417585 FASTQ S1_L006_R2 unaligned CPTAC3 b181b107-249a-4136-954f-0a3022387edc b257678e46388ae27a9a63dad2475307 {"aliquot_tag": "ALQ_5e2ba88c", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00819.RNA-Seq.transcriptome.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.transcriptome.gdc_realn.bam 10340402864 BAM transcriptome harmonized CPTAC3 713edd23-5b9b-4512-9553-d0bb628d7aa1 d7a6508cb10620048f00f637c021d1c0 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.RNA-Seq.transcriptome.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.transcriptome.gdc_realn.bam 12652726539 BAM transcriptome harmonized CPTAC3 6f32276a-992e-468a-9819-afdcd14ba8a4 fe77d890850062198c74170cea6994d0 {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor"} -C3L-00819.Targeted.T C3L-00819 PDA Targeted_Sequencing tumor CPT0064090006_1 CPT0064090006_1.CustomSelection.RP-1303.PDO-18786.bam 4221294593 BAM aligned CPTAC3 c6cbcd24-61f5-4991-82ce-3f4f2c9c2801 805fa5999bd513094faf18572ea64c51 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor"} -C3L-00819.Targeted.T.hg38 C3L-00819 PDA Targeted_Sequencing tumor CPT0064090006_1 74bafef4-c6ea-4079-94d1-272f647dc377_targetedsequencing_gdc_realn.bam 6105872936 BAM harmonized CPTAC3 035ca893-49e4-4b59-8f08-ea13e64c7b9c c6f62061fef0afeac829046eff0c80f2 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor"} -C3L-00819.WGS.A C3L-00819 PDA WGS tissue_normal CPT0064110009 CPT0064110009.WholeGenome.RP-1303.bam 63231664648 BAM aligned CPTAC3 078fe182-65b8-4baf-998b-3319bb9d26b6 221d5ff78ab7c44cc8914094e892520b {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.WGS.A.hg38 C3L-00819 PDA WGS tissue_normal CPT0064110009 5538bcc6-592f-41c1-9ec1-6282083bbaf2_wgs_gdc_realn.bam 92480690338 BAM harmonized CPTAC3 3c785d1f-f764-4b8e-bc38-bd0be5845d2d 636b7ead016799d8a1d051905ac8beb6 {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.WGS.N C3L-00819 PDA WGS blood_normal CPT0065380002 CPT0065380002.WholeGenome.RP-1303.bam 94778941343 BAM aligned CPTAC3 75d13112-a83c-4d9c-87d6-705935549bc3 d91be836869b37e12fd1c62cecc8df15 {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00819.WGS.N.hg38 C3L-00819 PDA WGS blood_normal CPT0065380002 83f3c4ba-426e-4a3f-89ab-188cc9b36b61_gdc_realn.bam 148940124149 BAM harmonized CPTAC3 a8b28d95-7d4d-4a5f-8f3d-683f43f71073 8ef960a1344b1dd2735e3211fc707c5c {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00819.WGS.T C3L-00819 PDA WGS tumor CPT0064090006 CPT0064090006.WholeGenome.RP-1303.bam 83238972736 BAM aligned CPTAC3 f160f51e-87df-4e8e-8fa7-8c0da0a101b0 275597ee2b7ba4e59b03baf8b7a98e12 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor"} -C3L-00819.WGS.T.hg38 C3L-00819 PDA WGS tumor CPT0064090006 1b8aafd9-2b75-483d-a424-d7137b43fbdd_gdc_realn.bam 130143942155 BAM harmonized CPTAC3 61085e57-824b-4cc5-ac7e-5896ab9d9c62 0320e284cd911dbdf0a4fc5b12b00da0 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor"} -C3L-00819.WXS.A C3L-00819 PDA WXS tissue_normal CPT0064110009 CPT0064110009.WholeExome.RP-1303.bam 22528644853 BAM aligned CPTAC3 9e708c18-faba-4b5f-a8b3-b5695f19f16e 1603b5910f0bdcf7ad5eb55fb680c0ba {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.WXS.A.hg38 C3L-00819 PDA WXS tissue_normal CPT0064110009 5538bcc6-592f-41c1-9ec1-6282083bbaf2_wxs_gdc_realn.bam 30143624734 BAM harmonized CPTAC3 53e4607e-1957-4988-8007-862376d52e50 c24a3abb6607caa9e2124c688f140adb {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00819.WXS.N C3L-00819 PDA WXS blood_normal CPT0065380002 CPT0065380002.WholeExome.RP-1303.bam 30551993211 BAM aligned CPTAC3 75d4513b-0ed9-4455-b7fa-85a58e3987bb e08dfb670a9621bded972a78e690fec2 {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00819.WXS.N.hg38 C3L-00819 PDA WXS blood_normal CPT0065380002 83f3c4ba-426e-4a3f-89ab-188cc9b36b61_gdc_realn.bam 40942297167 BAM harmonized CPTAC3 f327a307-e1d6-4db6-a753-303c420d06bb dece519f92f5abda151f0804a08e7430 {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-00819.WXS.T C3L-00819 PDA WXS tumor CPT0064090006_1 CPT0064090006_1.WholeExome.RP-1303.bam 60580904130 BAM aligned CPTAC3 0e891689-22a7-42d4-87f9-7b2375f85876 4870bd37bb6c41756d6ce0a8d2ee5bf2 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor"} -C3L-00819.WXS.T C3L-00819 PDA WXS tumor CPT0064090006 CPT0064090006.WholeExome.RP-1303.bam 37010704765 BAM aligned CPTAC3 dc65945f-cffe-49af-98ab-290a0b4e0e84 be23155dd5bf0c6e1e533bfe995e34e2 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor"} -C3L-00819.WXS.T.hg38 C3L-00819 PDA WXS tumor CPT0064090006_1 74bafef4-c6ea-4079-94d1-272f647dc377_wxs_gdc_realn.bam 84091557788 BAM harmonized CPTAC3 edbc307d-b7a4-4d75-8ee9-0d12df207688 4a0c50fc545926c1f72a5387a4cdf525 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor"} -C3L-00819.WXS.T.hg38 C3L-00819 PDA WXS tumor CPT0064090006 1b8aafd9-2b75-483d-a424-d7137b43fbdd_gdc_realn.bam 50976568926 BAM harmonized CPTAC3 a7f0d7f7-c73c-40f5-a7b5-94a77588088d 934c9687f03792b7b1c6da7aebc9c8bb {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor"} -C3L-00881.MethArray.Green.A C3L-00881 PDA Methylation_Array tissue_normal CPT0017130006 203561450054_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7a1b614e-f590-4bb9-a70d-14b4962cc0e7 9cb2a00e1d75c91ef86df08b1575a85a {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00881.MethArray.Green.T C3L-00881 PDA Methylation_Array tumor CPT0017040007 202178770008_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2b71b0bb-1f7d-47ff-a331-192a2675bd30 2dbd9f507e59a0ae3919ee732e65b2b4 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor"} -C3L-00881.MethArray.Red.A C3L-00881 PDA Methylation_Array tissue_normal CPT0017130006 203561450054_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 af81c781-bc2d-43ac-8935-b641b66caf26 2f7b3bf328b339820bd0139ced1572a8 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00881.MethArray.Red.T C3L-00881 PDA Methylation_Array tumor CPT0017040007 202178770008_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 b9f60daa-d40a-43ee-a8eb-4062e4ca4625 c748ce8c0b574a421cbb911559e4ab27 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor"} -C3L-00881.miRNA-Seq.S34_L002_R1.T C3L-00881 PDA miRNA-Seq tumor CPT0017040010 180924_UNC31-K00269_0154_AHWTMLBBXX_CTAGCT_S34_L002_R1_001.unaln.bam 310191925 BAM S34_L002_R1 unaligned CPTAC3 cf7231b4-66b9-4278-bef8-03bf63def1cf a5b63a2361f14ba268c1ad4e40ae6c53 {"aliquot_tag": "ALQ_fd51f65c", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00881.miRNA-Seq.T.hg38 C3L-00881 PDA miRNA-Seq tumor CPT0017040010 226b9c1a-2f7b-49c7-92ff-c7d7b485d135_mirnaseq_gdc_realn.bam 342136754 BAM harmonized CPTAC3 1202a48e-468d-471f-9c95-99318507407d 81aa90063dc452ae9898f55558edeb43 {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor"} -C3L-00881.RNA-Seq.chimeric.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.chimeric.gdc_realn.bam 148038164 BAM chimeric harmonized CPTAC3 5e79c1cc-4bed-40ff-8fda-f5badb3f1a3c 21f8bf457c94aa587d9903c2d8a6700e {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor"} -C3L-00881.RNA-Seq.genomic.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.genomic.gdc_realn.bam 8446089318 BAM genomic harmonized CPTAC3 43dc629e-c53b-4bf0-b493-468f4289de00 db51b1a54cc23b2c4c68646b3d9c278b {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor"} -C3L-00881.RNA-Seq.S12_L003_R1.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3945688574 FASTQ S12_L003_R1 unaligned CPTAC3 061532ad-114c-49c6-bb96-1c35ce0849e6 3e7ecde932c35908a7d749bfa30c355f {"aliquot_tag": "ALQ_fd51f65c", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00881.RNA-Seq.S12_L003_R2.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 4400702461 FASTQ S12_L003_R2 unaligned CPTAC3 0715a7e9-7782-4a70-893f-3b504345a2c7 d62486ff23a7cbafe28dc56ff49e8d5e {"aliquot_tag": "ALQ_fd51f65c", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00881.RNA-Seq.transcriptome.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.transcriptome.gdc_realn.bam 10274496037 BAM transcriptome harmonized CPTAC3 5520129d-a834-45c6-885a-531b0bd49d57 5b4e00f153763a173b2edb483b5f2db4 {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor"} -C3L-00881.Targeted.T C3L-00881 PDA Targeted_Sequencing tumor CPT0017040007_1 CPT0017040007_1.CustomSelection.RP-1303.PDO-18786.bam 5041708878 BAM aligned CPTAC3 83a7c2e4-431d-425e-b052-c1373209d1bb d856aee3f726585861d057044c8770a5 {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor"} -C3L-00881.Targeted.T.hg38 C3L-00881 PDA Targeted_Sequencing tumor CPT0017040007_1 91520624-6be3-4d93-9269-6fce7a30d3c5_targetedsequencing_gdc_realn.bam 7149007745 BAM harmonized CPTAC3 fdcbaa06-a8c3-47da-be7d-28ba600a156b 73cd662d1a76807ca341984a12ed2bd8 {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor"} -C3L-00881.WGS.A C3L-00881 PDA WGS tissue_normal CPT0017130006 CPT0017130006.WholeGenome.RP-1303.bam 62384590246 BAM aligned CPTAC3 c93c682b-d693-4f51-bdfc-3fa5e4453d43 3f787b251f63b3bf7bcefc311059bbf3 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00881.WGS.A.hg38 C3L-00881 PDA WGS tissue_normal CPT0017130006 3ea2fa57-a34d-47b2-bef3-bcfc36caa1ea_wgs_gdc_realn.bam 90320102144 BAM harmonized CPTAC3 7c92c6c9-e04d-42c9-933c-0602a6fda4f4 fdaf1d9bade3f8fe5af5b6b2af7c8190 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00881.WGS.N C3L-00881 PDA WGS blood_normal CPT0015340002 CPT0015340002.WholeGenome.RP-1303.bam 70621132255 BAM aligned CPTAC3 456bd6d7-0155-4cee-a822-63791fd617e4 9125cef0dd3e15cc3aff1686fa98cf16 {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00881.WGS.N.hg38 C3L-00881 PDA WGS blood_normal CPT0015340002 8d1649d4-c0ae-4223-bf7d-c6e492008dba_gdc_realn.bam 108348965208 BAM harmonized CPTAC3 cf3d2897-c1c8-4965-944d-b091e7563047 1c94acfe66287664ae79c88536a46868 {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00881.WGS.T C3L-00881 PDA WGS tumor CPT0017040007 CPT0017040007.WholeGenome.RP-1303.bam 69072126109 BAM aligned CPTAC3 fab2adea-079f-4c97-a160-a03f03da9460 d4f28c1e50b5befaed21e93ab1025134 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor"} -C3L-00881.WGS.T.hg38 C3L-00881 PDA WGS tumor CPT0017040007 6b6491db-c497-45a7-b98d-f4d43f89435c_gdc_realn.bam 104162893384 BAM harmonized CPTAC3 13af20a3-5702-49be-9374-c78873eedf1c df53b36ea5f0fe5fda46ad9ad9bb379e {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor"} -C3L-00881.WXS.A C3L-00881 PDA WXS tissue_normal CPT0017130006 CPT0017130006.WholeExome.RP-1303.bam 25240077061 BAM aligned CPTAC3 6348ac58-80ff-4697-a0db-51aa65929a51 c3bf3d454adec582c0193baa42f4da23 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00881.WXS.A.hg38 C3L-00881 PDA WXS tissue_normal CPT0017130006 3ea2fa57-a34d-47b2-bef3-bcfc36caa1ea_wxs_gdc_realn.bam 34268110297 BAM harmonized CPTAC3 508bab91-68e9-401e-9f19-b5c168329b4a bba805c1268d028b8a02ba7f3672c79b {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00881.WXS.N C3L-00881 PDA WXS blood_normal CPT0015340002 CPT0015340002.WholeExome.RP-1303.bam 24305811129 BAM aligned CPTAC3 3cef8db3-6457-4427-b580-cba5f52e46c2 158aea37171740cf4c6a34ceac458e84 {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00881.WXS.N.hg38 C3L-00881 PDA WXS blood_normal CPT0015340002 8d1649d4-c0ae-4223-bf7d-c6e492008dba_gdc_realn.bam 32853733152 BAM harmonized CPTAC3 b0c0a7b2-aa20-4671-8ef1-5c12cbd57e7f 8f4bdaf6f785c334c8847e577455e5ed {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00881.WXS.T C3L-00881 PDA WXS tumor CPT0017040007_1 CPT0017040007_1.WholeExome.RP-1303.bam 69347372832 BAM aligned CPTAC3 d4e52e9c-2fc8-45d3-8644-d3d90924dfd8 a715ca63fef161276560c4523bf90f4b {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor"} -C3L-00881.WXS.T C3L-00881 PDA WXS tumor CPT0017040007 CPT0017040007.WholeExome.RP-1303.bam 39243772764 BAM aligned CPTAC3 e498972d-4191-406e-8174-372d915dec42 025b49b63848cf715ad1e5e6a46296ca {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor"} -C3L-00881.WXS.T.hg38 C3L-00881 PDA WXS tumor CPT0017040007_1 91520624-6be3-4d93-9269-6fce7a30d3c5_wxs_gdc_realn.bam 95750084176 BAM harmonized CPTAC3 cb6b8621-e1dc-40f0-85f0-893dc8b58c2c a1dad0e9d94b6ade0936e1264acbc25b {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor"} -C3L-00881.WXS.T.hg38 C3L-00881 PDA WXS tumor CPT0017040007 6b6491db-c497-45a7-b98d-f4d43f89435c_gdc_realn.bam 53942362364 BAM harmonized CPTAC3 4bf075b8-1f5f-4305-8429-15c3ea760aa6 92f645883bc275509b2792a7e0301595 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor"} -C3L-00893.MethArray.Green.A C3L-00893 LUAD Methylation_Array tissue_normal CPT0083140009 203027390113_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b44d61f3-1864-486b-ae1c-967b537b6cec 11299e503800511a38688ff15d410ee1 {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.MethArray.Green.T C3L-00893 LUAD Methylation_Array tumor CPT0083100009 202184990069_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c2383c0b-9458-44ab-ae9e-a2e0d6bbd425 404e9093d99dcb9e31094e1cfc10d759 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor"} -C3L-00893.MethArray.Red.A C3L-00893 LUAD Methylation_Array tissue_normal CPT0083140009 203027390113_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 e2d50619-fbf6-4966-b505-d40adca18ffb a7299a1b9697b607788c045a77453e1c {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.MethArray.Red.T C3L-00893 LUAD Methylation_Array tumor CPT0083100009 202184990069_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 1c530bf8-83ae-492a-b67e-da86a3979bf4 d627950a03be463bc3036a263268176e {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor"} -C3L-00893.miRNA-Seq.A.hg38 C3L-00893 LUAD miRNA-Seq tissue_normal CPT0083140006 e5055dff-627f-4b38-9427-33077e393d61_mirnaseq_gdc_realn.bam 255366313 BAM harmonized CPTAC3 fa7a1580-638e-4e59-b862-ff50fcb55aad 074ab594a28e9855320510e286641cd6 {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.miRNA-Seq.S21_L001_R1.T C3L-00893 LUAD miRNA-Seq tumor CPT0083100006 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L001_R1_001.unaln.bam 216450342 BAM S21_L001_R1 unaligned CPTAC3 ba88b1ab-a624-476d-b0fd-bac157f3eca9 7949de36ca82347ef0dab06c760b3592 {"aliquot_tag": "ALQ_d8f52875", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00893.miRNA-Seq.S6_L007_R1.A C3L-00893 LUAD miRNA-Seq tissue_normal CPT0083140006 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L007_R1_001.unaln.bam 231879293 BAM S6_L007_R1 unaligned CPTAC3 b0e83773-fcb4-4212-9392-33e21d600d33 394be91a3ad27db2037450ed6521e6ea {"aliquot_tag": "ALQ_2d758eb5", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.miRNA-Seq.T.hg38 C3L-00893 LUAD miRNA-Seq tumor CPT0083100006 bc3063e0-2ca9-44e1-858f-13fb74d8dfcf_mirnaseq_gdc_realn.bam 243932470 BAM harmonized CPTAC3 4acd9725-90c1-42e7-b611-c4e3c79e1467 9d660dab6485f5d08544f4657cf8d4d7 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor"} -C3L-00893.RNA-Seq.chimeric.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.chimeric.gdc_realn.bam 112918676 BAM chimeric harmonized CPTAC3 77da31b2-8e19-4b61-b5ca-22ec7fa2b8c2 0b0e4c7a7c97eb6ba8c6d6f136f8c722 {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.RNA-Seq.chimeric.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.chimeric.gdc_realn.bam 56390524 BAM chimeric harmonized CPTAC3 7bd87519-87f1-4d89-a89c-f61440512af3 c8ed8a5a17de0871e51f0a28be3e0e85 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor"} -C3L-00893.RNA-Seq.genomic.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.genomic.gdc_realn.bam 9009882323 BAM genomic harmonized CPTAC3 df9dea58-a308-4bbf-84d7-593da5713273 b04e3b3376641c1fec692985b318d805 {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.RNA-Seq.genomic.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.genomic.gdc_realn.bam 9907751154 BAM genomic harmonized CPTAC3 3f152507-ee28-442b-a91d-f4a57eab5fc6 e6ac581a9ddfb63aa7031cffb90aa257 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor"} -C3L-00893.RNA-Seq.S17_L005_R1.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R1_001.fastq.gz 4401515590 FASTQ S17_L005_R1 unaligned CPTAC3 48c56ccb-774e-4b7d-92cb-701679ef1560 4bfff3be82c03a71ed3cd697cdd116f7 {"aliquot_tag": "ALQ_2d758eb5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.RNA-Seq.S17_L005_R2.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R2_001.fastq.gz 4891480539 FASTQ S17_L005_R2 unaligned CPTAC3 9c6b9a75-9890-48b5-9776-5ea84e1bf64d 1e1f56185072a2f2f07600538a387e4e {"aliquot_tag": "ALQ_2d758eb5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.RNA-Seq.S6_L002_R1.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4240500605 FASTQ S6_L002_R1 unaligned CPTAC3 eb47292d-387e-404a-a89d-c8fe3f247112 f068d342ab97a4fef0f33270de6b2ae0 {"aliquot_tag": "ALQ_d8f52875", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00893.RNA-Seq.S6_L002_R2.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4628651253 FASTQ S6_L002_R2 unaligned CPTAC3 0b9baab7-6603-4477-9086-ae8e5deebad8 85678114bb1c49b70eeb85283da49d13 {"aliquot_tag": "ALQ_d8f52875", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00893.RNA-Seq.transcriptome.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.transcriptome.gdc_realn.bam 11551227790 BAM transcriptome harmonized CPTAC3 94631469-19c9-4c8a-9700-6acab9d910cd 38e56cb5f6d1a29a8daf3ee7770181bd {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.RNA-Seq.transcriptome.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.transcriptome.gdc_realn.bam 9110919598 BAM transcriptome harmonized CPTAC3 130aca1e-f8e8-43ec-b72e-1eed796ebfc1 a50a00ef6190fc7fcebab82e5a4f9de0 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor"} -C3L-00893.WGS.A C3L-00893 LUAD WGS tissue_normal CPT0083140009 CPT0083140009.WholeGenome.RP-1303.bam 61042797031 BAM aligned CPTAC3 e65030a9-be65-438e-a7f2-3906a97f24df 1475dd98fe6dbd0885f7f76190f50c2f {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.WGS.A.hg38 C3L-00893 LUAD WGS tissue_normal CPT0083140009 f9d3dec0-e554-43a7-9957-c29b88eac369_wgs_gdc_realn.bam 90430430809 BAM harmonized CPTAC3 50c9d84a-d21b-4b4f-8dc8-f54d13fc45ab 8ad1fc4f571acdc818c4b89b0fd0427e {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.WGS.N C3L-00893 LUAD WGS blood_normal CPT0081760002 CPT0081760002.WholeGenome.RP-1303.bam 70874580144 BAM aligned CPTAC3 84d5e015-a8f1-4306-8ecc-dfb3655afe78 bbf4a66c3d7d36037aeb49f93a3a3257 {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-00893.WGS.N.hg38 C3L-00893 LUAD WGS blood_normal CPT0081760002 b686ec16-3532-4c19-83d2-0f7c2a36000b_gdc_realn.bam 107603964270 BAM harmonized CPTAC3 7dd408b2-233e-4bd4-874d-3cec3956d5fe 777e0b3cc7c446cfbbf1a355984bd6f1 {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-00893.WGS.T C3L-00893 LUAD WGS tumor CPT0083100009 CPT0083100009.WholeGenome.RP-1303.bam 61282457932 BAM aligned CPTAC3 02871ad7-333f-48ec-b256-b52f6995f057 b8811d1dd736e96da378ebd5e96c8f51 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor"} -C3L-00893.WGS.T.hg38 C3L-00893 LUAD WGS tumor CPT0083100009 0815b3bb-c9ee-4804-9f51-05014a8e5fbe_gdc_realn.bam 91255988938 BAM harmonized CPTAC3 e561b251-3d7a-46f4-9efc-7c7bdaebeabd 9e9c8fc0e52fd495a90b7779af21e4d6 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor"} -C3L-00893.WXS.A C3L-00893 LUAD WXS tissue_normal CPT0083140009 CPT0083140009.WholeExome.RP-1303.bam 33156369570 BAM aligned CPTAC3 4acb3e05-ab4b-4039-82dc-1392c21b6866 962b972e0482224d722d74ca905cb91b {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.WXS.A.hg38 C3L-00893 LUAD WXS tissue_normal CPT0083140009 f9d3dec0-e554-43a7-9957-c29b88eac369_wxs_gdc_realn.bam 44979507116 BAM harmonized CPTAC3 acdc6114-f6a0-4a02-a650-8850d38e22ff 400abcb3aa50b0ae237e384d8e49e99e {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00893.WXS.N C3L-00893 LUAD WXS blood_normal CPT0081760002 CPT0081760002.WholeExome.RP-1303.bam 25386583694 BAM aligned CPTAC3 06bdc846-d8a2-49dc-a3d6-34119c752384 13abec784279b1043c67bea3add1e8fe {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-00893.WXS.N.hg38 C3L-00893 LUAD WXS blood_normal CPT0081760002 b686ec16-3532-4c19-83d2-0f7c2a36000b_gdc_realn.bam 35026634971 BAM harmonized CPTAC3 5f337a1b-c618-421e-86de-2d2d4fc2b689 ddb17870c97fadf364579f17f84208eb {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-00893.WXS.T C3L-00893 LUAD WXS tumor CPT0083100009 CPT0083100009.WholeExome.RP-1303.bam 35943652683 BAM aligned CPTAC3 c8470aba-106d-48f3-ad68-ad0d8fb8b98a b9377fc5395aa8ef197719da600303a3 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor"} -C3L-00893.WXS.T.hg38 C3L-00893 LUAD WXS tumor CPT0083100009 0815b3bb-c9ee-4804-9f51-05014a8e5fbe_gdc_realn.bam 49062295437 BAM harmonized CPTAC3 a0116323-3a81-4e30-8fda-42ef92d0b231 f28e52952a79caab7b126a66958e8538 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor"} -C3L-00898.DUP_132682c9.WGS.N C3L-00898 UCEC WGS blood_normal CPT0172430002_1 CPT0172430002_1.WholeGenome.RP-1303.bam 64392514987 BAM aligned CPTAC3 6017b281-cd44-48d1-a891-18acf653c42f e79104d93f778cf363f256afb3f02b9c {"aliquot_tag": "DUP_132682c9", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal"} -C3L-00898.DUP_132682c9.WGS.N.hg38 C3L-00898 UCEC WGS blood_normal CPT0172430002_1 33f58282-84bc-49ef-9122-2f2765e6b392_wgs_gdc_realn.bam 91754531420 BAM harmonized CPTAC3 65a09d23-1b89-492f-a17d-49fcc4365290 e1ef81d859d38a841ea0fb0d9415e051 {"aliquot_tag": "DUP_132682c9", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal"} -C3L-00898.MethArray.Green.T C3L-00898 UCEC Methylation_Array tumor CPT0172200011 203561450008_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 edcd5bd3-6733-4bd0-844d-7bd54a7a88db c46cc948bad963d998dd9f159cbde71f {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor"} -C3L-00898.MethArray.Red.T C3L-00898 UCEC Methylation_Array tumor CPT0172200011 203561450008_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 e1c8ea38-78d3-4e36-aa29-fbc4d0ecd4bd 6d829bc3138787db9ae1b02cf72c1efb {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor"} -C3L-00898.miRNA-Seq.S41_L004_R1.T C3L-00898 UCEC miRNA-Seq tumor CPT0172200017 190508_UNC31-K00269_0215_BH7FYKBBXY_GACGAC_S41_L004_R1_001.unaln.bam 159712108 BAM S41_L004_R1 unaligned CPTAC3 8edb4b1d-6cfd-4d0a-a1bf-02ba972e9834 0523213fdc88d85fb37ae5cfc97a3845 {"aliquot_tag": "ALQ_58515657", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00898.miRNA-Seq.T.hg38 C3L-00898 UCEC miRNA-Seq tumor CPT0172200017 01d9c7c1-092f-41d9-948a-f8f5851a70b1_mirnaseq_gdc_realn.bam 176218513 BAM harmonized CPTAC3 64346efc-9a69-45a9-a7a7-ca279f41ee66 86db75e9c0f5aa59892c173773f48d1e {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.chimeric.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.chimeric.gdc_realn.bam 50684832 BAM chimeric harmonized CPTAC3 8a3105c3-2c08-4b84-8cef-745066bc6d61 b91f47fcb9209aa11300b6881f03af13 {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.chimeric.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.chimeric.gdc_realn.bam 118439231 BAM chimeric harmonized CPTAC3 c45e866a-6f8a-4eff-8657-7bf7cd1fcbcf cc71d9754f871022cdf897b8c3b2813d {"aliquot_tag": "ALQ_985989e2", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.genomic.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.genomic.gdc_realn.bam 10929379469 BAM genomic harmonized CPTAC3 dc959e48-0485-4f7f-8bea-10016dc9134e 67a2de3ebd24ec1f511f6844676a3bae {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.genomic.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.genomic.gdc_realn.bam 5512946461 BAM genomic harmonized CPTAC3 1a22c46d-cda1-4781-a002-73d0f0bd69e2 e79b0b1caa7d93deb38b6ce6d78020a7 {"aliquot_tag": "ALQ_985989e2", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.S9_L003_R1.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R1_001.fastq.gz 5187718239 FASTQ S9_L003_R1 unaligned CPTAC3 86f179d9-4c0f-4695-a5b9-9c1451edb1c1 7cf3b5c36c46219db87107dafce69e4c {"aliquot_tag": "ALQ_58515657", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.S9_L003_R2.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R2_001.fastq.gz 5955392897 FASTQ S9_L003_R2 unaligned CPTAC3 29ec5877-3a1c-4187-b46b-02690a5bb354 b72dfe0e06ba49ae5260a1ed117d6cc5 {"aliquot_tag": "ALQ_58515657", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.S9_R1.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R1_001.fastq.gz 3035053534 FASTQ S9_R1 unaligned CPTAC3 da4bde3d-79c5-4b90-a498-41d570e47e04 0832d21c91e851c140a9695052dfb3df {"aliquot_tag": "ALQ_985989e2", "sample": "S9", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.S9_R2.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R2_001.fastq.gz 3108167528 FASTQ S9_R2 unaligned CPTAC3 6099cd8d-c4e9-4e6d-aeed-eff21a86bc4e 8ec904c537b10427dbea56d4818dbff4 {"aliquot_tag": "ALQ_985989e2", "sample": "S9", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.transcriptome.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.transcriptome.gdc_realn.bam 11430072706 BAM transcriptome harmonized CPTAC3 9b202a97-8e71-4f96-ab4a-27e7f918b66c 5c454c70b1cf9a587979b5a240a82385 {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor"} -C3L-00898.RNA-Seq.transcriptome.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.transcriptome.gdc_realn.bam 2811211711 BAM transcriptome harmonized CPTAC3 a2c55288-9c38-4b8b-9e90-2b54797ae8e0 8cd18d695f6c761374c64e3d1af1b282 {"aliquot_tag": "ALQ_985989e2", "gdc_sample_type": "Primary Tumor"} -C3L-00898.WGS.N C3L-00898 UCEC WGS blood_normal CPT0172430002 CPT0172430002.WholeGenome.RP-1303.bam 21007836542 BAM aligned CPTAC3 25c292bc-6ae5-4331-90d5-6183ed40082d 6c69a49f68ed7507479825dbb98de57c {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal"} -C3L-00898.WGS.N.hg38 C3L-00898 UCEC WGS blood_normal CPT0172430002 7e0ba421-e26e-4869-8c26-a4e464b8c5a7_wgs_gdc_realn.bam 28837418601 BAM harmonized CPTAC3 7a0392d8-d5f1-4f26-9589-887b70da45c1 f2d7b48d7845d52f8bc31101033fbb4d {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal"} -C3L-00898.WGS.T C3L-00898 UCEC WGS tumor CPT0172200011 CPT0172200011.WholeGenome.RP-1303.bam 65983164800 BAM aligned CPTAC3 75c4b0fe-6834-47c7-88dc-1c6cb29100f9 7f8fbd13cef41bb2bf6573fff8eb3c1c {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor"} -C3L-00898.WGS.T.hg38 C3L-00898 UCEC WGS tumor CPT0172200011 35e6ac61-a963-40d1-a82d-adbb38eb860e_wgs_gdc_realn.bam 97769861947 BAM harmonized CPTAC3 5d28b983-e8d3-4307-b06c-4184124fe80e 2f686c3a9928df802ef7ccaf8dc257ce {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor"} -C3L-00898.WXS.N C3L-00898 UCEC WXS blood_normal CPT0172430002 CPT0172430002.WholeExome.RP-1303.bam 21007836606 BAM aligned CPTAC3 752fbca6-d6f9-452a-a57b-0623fe5e284a d2eb4508a48c6bcb7606863135cb6930 {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal"} -C3L-00898.WXS.N.hg38 C3L-00898 UCEC WXS blood_normal CPT0172430002 7e0ba421-e26e-4869-8c26-a4e464b8c5a7_wxs_gdc_realn.bam 28932109551 BAM harmonized CPTAC3 f7d8faf3-fd07-4b24-96e0-cafed09c54cb 35194204cabfc4d4b38482f47a1af06e {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal"} -C3L-00898.WXS.T C3L-00898 UCEC WXS tumor CPT0172200011 CPT0172200011.WholeExome.RP-1303.bam 24656420442 BAM aligned CPTAC3 14e250a0-2ecb-41c9-8676-28d8a7bbc003 9f3cc3f09f4841c4830213d628116ce0 {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor"} -C3L-00898.WXS.T.hg38 C3L-00898 UCEC WXS tumor CPT0172200011 35e6ac61-a963-40d1-a82d-adbb38eb860e_wxs_gdc_realn.bam 34829592452 BAM harmonized CPTAC3 2f9900ee-7937-42a9-a4f4-7499378c8057 39a98ecb26700587bd8fa2964998b691 {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor"} -C3L-00902.MethArray.Green.A C3L-00902 CCRCC Methylation_Array tissue_normal CPT0063330009 204930640120_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6ecc69d2-a99a-44d0-8674-084802182194 823997404e6363ed4ca0f7007971b48e {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.MethArray.Green.T C3L-00902 CCRCC Methylation_Array tumor CPT0063320009 202178770109_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d66ce126-5bbe-45a7-9dfb-ac16d0bacb99 44c57e031777c8391d0f454a33afc7fb {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor"} -C3L-00902.MethArray.Red.A C3L-00902 CCRCC Methylation_Array tissue_normal CPT0063330009 204930640120_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 3d0666f1-1269-475a-a412-d1bf4438fa6b 600954a76c4a426780254a9c5ec9c0c2 {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.MethArray.Red.T C3L-00902 CCRCC Methylation_Array tumor CPT0063320009 202178770109_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 ef4b2888-1b80-4205-9d61-07cbdf6e1a34 2e3ab248731cf68639bcfbf6e496f6b4 {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor"} -C3L-00902.miRNA-Seq.A.hg38 C3L-00902 CCRCC miRNA-Seq tissue_normal CPT0063330006 efada245-7f9f-424d-a8b1-043be0220e71_mirnaseq_gdc_realn.bam 214863463 BAM harmonized CPTAC3 bf157aac-7409-44f5-b7a5-b950e938aac4 22eda3aec57ef26dbd7b07575678220c {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.miRNA-Seq.S12_L003_R1.T C3L-00902 CCRCC miRNA-Seq tumor CPT0063320005 181113_UNC31-K00269_0164_AH23NNBBXY_CCAACA_S12_L003_R1_001.unaln.bam 213365537 BAM S12_L003_R1 unaligned CPTAC3 7d1f3581-5cfa-477e-bc28-cf91954de514 6a284e466eb148acadef54d65a331d81 {"aliquot_tag": "ALQ_637e9996", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00902.miRNA-Seq.S40_L004_R1.A C3L-00902 CCRCC miRNA-Seq tissue_normal CPT0063330006 181108_UNC31-K00269_0163_BH23TVBBXY_CTCAGA_S40_L004_R1_001.unaln.bam 193130666 BAM S40_L004_R1 unaligned CPTAC3 0132c717-95e1-4d26-92bb-1250686277e2 79ce8ff4392fa0a2ddf2bbab3598c21d {"aliquot_tag": "ALQ_c717e19c", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.miRNA-Seq.T.hg38 C3L-00902 CCRCC miRNA-Seq tumor CPT0063320005 5399457f-af35-4a63-b286-cb9d6253a0bf_mirnaseq_gdc_realn.bam 240534685 BAM harmonized CPTAC3 36439450-b0ff-4c55-9f66-a62e4250c37b a6e79b2f4074956c37e50a3fde5489e9 {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor"} -C3L-00902.RNA-Seq.chimeric.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.chimeric.gdc_realn.bam 64709570 BAM chimeric harmonized CPTAC3 4c365daf-afac-4539-877d-6d8b22cacca8 efd679db9bc2b398350c6b2d4adf39eb {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.RNA-Seq.chimeric.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.chimeric.gdc_realn.bam 38323353 BAM chimeric harmonized CPTAC3 0a9c9b1e-12b4-48e0-acff-dd9d1254c74b db378e7f8ef70ce66a572e5e20fde437 {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor"} -C3L-00902.RNA-Seq.genomic.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.genomic.gdc_realn.bam 6423979907 BAM genomic harmonized CPTAC3 d59247dd-094b-4760-8083-74cf9a0960d6 a6ede082cd167412f07ef1f87e34714b {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.RNA-Seq.genomic.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.genomic.gdc_realn.bam 7883566909 BAM genomic harmonized CPTAC3 0ece7793-f954-4fe0-8dfa-bf1876db7d70 c35d6cffeb2240500e3f780c05383e4e {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor"} -C3L-00902.RNA-Seq.S3_L001_R1.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3901575779 FASTQ S3_L001_R1 unaligned CPTAC3 f005f1f9-a95f-4535-8188-f7193cb8ea9a d5d4d3c67970e6b2b27ba3128343b06f {"aliquot_tag": "ALQ_637e9996", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00902.RNA-Seq.S3_L001_R2.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4198357331 FASTQ S3_L001_R2 unaligned CPTAC3 8035f7d9-434d-419a-84b8-72f10ef4ef14 48ee3412b295994b74c3e92a0fafab6d {"aliquot_tag": "ALQ_637e9996", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00902.RNA-Seq.S42_L004_R1.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R1_001.fastq.gz 3385998758 FASTQ S42_L004_R1 unaligned CPTAC3 03cff90c-7629-42c0-a7e2-177f233d0735 9abcc0b543ae0aabdf7e4c26136a8dc1 {"aliquot_tag": "ALQ_c717e19c", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.RNA-Seq.S42_L004_R2.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R2_001.fastq.gz 3417553994 FASTQ S42_L004_R2 unaligned CPTAC3 1a425e40-5d58-422a-8b44-3cc975f4153c 10c3ed47effb67a3b97dbc0ae05eac9d {"aliquot_tag": "ALQ_c717e19c", "sample": "S42", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.RNA-Seq.transcriptome.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.transcriptome.gdc_realn.bam 8491249659 BAM transcriptome harmonized CPTAC3 a79b45b9-6b08-4aff-9ae2-2981868de263 f0c502069c61c59ec8408581515777da {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.RNA-Seq.transcriptome.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.transcriptome.gdc_realn.bam 10895775979 BAM transcriptome harmonized CPTAC3 bc4cfafc-4a3f-40a1-a69d-5d7f095137ba 71dd46fa58087cc225db0ccecbb7058c {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor"} -C3L-00902.WGS.A C3L-00902 CCRCC WGS tissue_normal CPT0063330009 CPT0063330009.WholeGenome.RP-1303.bam 63962526544 BAM aligned CPTAC3 a6f53632-4a1d-4ad7-855e-6e1eaf41b414 8ecb57077bd8991c50386d1ba8a261ef {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.WGS.A.hg38 C3L-00902 CCRCC WGS tissue_normal CPT0063330009 a0f2851f-dfab-44c6-8f10-c08b22b05af9_wgs_gdc_realn.bam 93809506184 BAM harmonized CPTAC3 d81d1664-abb5-440f-9cde-ff2ff5a98070 23b125bb9f947f132a034235d1bfa3b0 {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.WGS.N C3L-00902 CCRCC WGS blood_normal CPT0065240002 CPT0065240002.WholeGenome.RP-1303.bam 77253380927 BAM aligned CPTAC3 16af8034-7ce4-4c5a-bac0-3a4989e70c3b 3149c0d853808ac5d0326e2c7e143e7f {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00902.WGS.N.hg38 C3L-00902 CCRCC WGS blood_normal CPT0065240002 cc4b8a38-f97c-4cc2-b2d6-4f5d4b135ec3_gdc_realn.bam 114460676121 BAM harmonized CPTAC3 be4390e5-10ce-459b-b1a7-acc51c8997e5 7a7199cc31db1fb99de208d20a7a8ccc {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00902.WGS.T C3L-00902 CCRCC WGS tumor CPT0063320009 CPT0063320009.WholeGenome.RP-1303.bam 85957721659 BAM aligned CPTAC3 ad89bf79-1f07-41d6-ac99-21f7f271bd16 03577328c4f8bfd2959de2859a634d2b {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor"} -C3L-00902.WGS.T.hg38 C3L-00902 CCRCC WGS tumor CPT0063320009 42d54beb-4782-41f3-961e-9e2410b43eb3_gdc_realn.bam 133426690584 BAM harmonized CPTAC3 7f9f3c60-6d35-48dd-9ed0-576ad6ec0ece 2fde89fac5c850e94aa03b0774d6302b {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor"} -C3L-00902.WXS.A C3L-00902 CCRCC WXS tissue_normal CPT0063330009 CPT0063330009.WholeExome.RP-1303.bam 29888220864 BAM aligned CPTAC3 914c7a22-a1a0-4078-9fa2-3c3d58724ab3 99563f49ac514807ca5d3d1d77cade6a {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.WXS.A.hg38 C3L-00902 CCRCC WXS tissue_normal CPT0063330009 a0f2851f-dfab-44c6-8f10-c08b22b05af9_wxs_gdc_realn.bam 40883515092 BAM harmonized CPTAC3 c9a67b61-c022-4ada-b7d2-3e27e71572fc 3a2922f319b041f911e90250f105b7c5 {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00902.WXS.N C3L-00902 CCRCC WXS blood_normal CPT0065240002 CPT0065240002.WholeExome.RP-1303.bam 29902129581 BAM aligned CPTAC3 fbe85c64-5f4a-4f36-8596-dcec225d4fe2 ee6fda31076d00ec5bfcee38f28582c4 {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00902.WXS.N.hg38 C3L-00902 CCRCC WXS blood_normal CPT0065240002 cc4b8a38-f97c-4cc2-b2d6-4f5d4b135ec3_gdc_realn.bam 41233176755 BAM harmonized CPTAC3 63b8df56-736c-4cc2-93cd-c95776e71305 bcb8d4246f11d9f345ef5ec554ede78c {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00902.WXS.T C3L-00902 CCRCC WXS tumor CPT0063320009 CPT0063320009.WholeExome.RP-1303.bam 35571001123 BAM aligned CPTAC3 7aa45333-b393-427b-a64e-bc77b24f3d7a 4f93e8b6b56a1cc0af9160940ae87714 {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor"} -C3L-00902.WXS.T.hg38 C3L-00902 CCRCC WXS tumor CPT0063320009 42d54beb-4782-41f3-961e-9e2410b43eb3_gdc_realn.bam 47930609964 BAM harmonized CPTAC3 bd67c388-cbb5-459d-babe-e6a80bd7715c 035816a73dddd79a69cb3572f29b65f3 {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor"} -C3L-00904.MethArray.Green.A C3L-00904 LSCC Methylation_Array tissue_normal CPT0007760006 203219650164_R02C01_Grn.idat 13676235 IDAT Green NA CPTAC3 36c934ec-a0cb-450b-a0e8-85ecf72c357f 5dbbb45a485b9732d4b37129bf80586d {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.MethArray.Green.T C3L-00904 LSCC Methylation_Array tumor CPT0007740009 202176300039_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3f0a8dae-2300-44d0-8935-f2747877c97c e5654fb651e516848c1505c8cde2296f {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor"} -C3L-00904.MethArray.Red.A C3L-00904 LSCC Methylation_Array tissue_normal CPT0007760006 203219650164_R02C01_Red.idat 13676235 IDAT Red NA CPTAC3 eaab04f5-d4cb-428b-8cb2-c28b8aedd4a7 6ef44fb5968048f214cea68b58309b1e {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.MethArray.Red.T C3L-00904 LSCC Methylation_Array tumor CPT0007740009 202176300039_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 9feaeb80-d28d-4a33-86c4-aa9b22066e07 c3b11901242a976cf361ef1cfab57a20 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor"} -C3L-00904.miRNA-Seq.A.hg38 C3L-00904 LSCC miRNA-Seq tissue_normal CPT0007760009 b2fdfbde-d43d-46fe-99cc-1553b4ca36a5_mirnaseq_gdc_realn.bam 262842936 BAM harmonized CPTAC3 3a79a7e9-71b5-4fb7-b37b-72f004deeca0 1c8c94b19bbfea04d1302e5f4f2f6b59 {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.miRNA-Seq.S19_L005_R1.T C3L-00904 LSCC miRNA-Seq tumor CPT0007740006 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L005_R1_001.unaln.bam 238326843 BAM S19_L005_R1 unaligned CPTAC3 bf94712e-aa4f-4fd4-8329-fd5c6f9aa5b2 df264131dd48d98677c95961ff8fcfdc {"aliquot_tag": "ALQ_dc86520e", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00904.miRNA-Seq.S38_L006_R1.A C3L-00904 LSCC miRNA-Seq tissue_normal CPT0007760009 181113_UNC31-K00269_0164_AH23NNBBXY_AGTTCC_S38_L006_R1_001.unaln.bam 235631687 BAM S38_L006_R1 unaligned CPTAC3 158b29c6-a7d8-44cf-8d8c-b89fde097ffa cc31eaab87c5285490dac0491f74dfd3 {"aliquot_tag": "ALQ_36f91cff", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.miRNA-Seq.T.hg38 C3L-00904 LSCC miRNA-Seq tumor CPT0007740006 fc2abf5c-a300-4149-bfb8-bc4f6bc83f83_mirnaseq_gdc_realn.bam 256755826 BAM harmonized CPTAC3 b74b5168-6e97-4520-b9e7-c9564cbe6e54 4ed98bb7906e236e8a1f229f9e4086a8 {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor"} -C3L-00904.RNA-Seq.chimeric.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.chimeric.gdc_realn.bam 33820208 BAM chimeric harmonized CPTAC3 6ee74ee0-1251-4707-b58c-79ab783b547d 63ee042a93904e7322eaaa2a3a3af773 {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.RNA-Seq.chimeric.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.chimeric.gdc_realn.bam 41884459 BAM chimeric harmonized CPTAC3 b852209f-9607-42ab-b926-7f94f18feee2 a767502348120eba3de0357022d6172e {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor"} -C3L-00904.RNA-Seq.genomic.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.genomic.gdc_realn.bam 9099740154 BAM genomic harmonized CPTAC3 688e61b5-032e-45f4-af46-e97d1d6db861 35448fd9e8662be0ca4d7bc112426a31 {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.RNA-Seq.genomic.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.genomic.gdc_realn.bam 6120898859 BAM genomic harmonized CPTAC3 9051f596-46ea-42a5-a182-8503da184523 ca36dc5960183b12db02ff15a1bafebd {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor"} -C3L-00904.RNA-Seq.S12_L003_R1.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R1_001.fastq.gz 2727114433 FASTQ S12_L003_R1 unaligned CPTAC3 9dd16445-d61f-49cf-b3e9-4cb91784328d 8b0d04ea27a07635ef7bc23caaac9e73 {"aliquot_tag": "ALQ_dc86520e", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00904.RNA-Seq.S12_L003_R2.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R2_001.fastq.gz 2940186419 FASTQ S12_L003_R2 unaligned CPTAC3 be15c178-1d81-4dc3-b11e-e8864691aac8 184492704686ab8c9c8c4bd0d6e06354 {"aliquot_tag": "ALQ_dc86520e", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00904.RNA-Seq.S14_L004_R1.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 3861950975 FASTQ S14_L004_R1 unaligned CPTAC3 f9a108ec-99ab-458e-9584-4dbc4b407ef6 fcbb0db89c18c94cbea3410b15b97c4c {"aliquot_tag": "ALQ_36f91cff", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.RNA-Seq.S14_L004_R2.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4211599234 FASTQ S14_L004_R2 unaligned CPTAC3 31cf3e68-7d16-4aa7-831e-b90a31a3c991 e99cccc9fa9fddcfe7e928a298e7e841 {"aliquot_tag": "ALQ_36f91cff", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.RNA-Seq.transcriptome.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.transcriptome.gdc_realn.bam 10547513577 BAM transcriptome harmonized CPTAC3 26dbff98-9da7-4751-915a-16ec723a5a8f 169a6e5404c2de9377916444f0c6768b {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.RNA-Seq.transcriptome.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.transcriptome.gdc_realn.bam 7147040902 BAM transcriptome harmonized CPTAC3 1355f188-f019-4347-812b-c6c18ce1b0e5 8daf2a6d63da284c2799796819d7cf5d {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor"} -C3L-00904.WGS.A C3L-00904 LSCC WGS tissue_normal CPT0007760006 CPT0007760006.WholeGenome.RP-1303.bam 53190749844 BAM aligned CPTAC3 fffe6c73-7d0b-4600-9a90-2e92ffe2653e 0161e445308c13df6a5e37749ff784dd {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.WGS.A.hg38 C3L-00904 LSCC WGS tissue_normal CPT0007760006 32e37138-84ae-40e3-9533-7d9be547c627_wgs_gdc_realn.bam 77587305561 BAM harmonized CPTAC3 c2be35bc-1af5-4fd0-933f-22f152880ca8 69654f6e65acfa9acbf5c292cb3c7050 {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.WGS.N C3L-00904 LSCC WGS blood_normal CPT0002920002 CPT0002920002.WholeGenome.RP-1303.bam 78100597618 BAM aligned CPTAC3 28f4e495-4cc8-4e51-b981-482aa8b852b7 e064ff6c5a1512f2abcb1325b2d3df0d {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00904.WGS.N.hg38 C3L-00904 LSCC WGS blood_normal CPT0002920002 a8847ec8-8718-435a-a1df-77690c4a60f1_gdc_realn.bam 116634762187 BAM harmonized CPTAC3 321d197d-86f3-4d3a-8434-2b621da14ed4 a9b3b1e780b818c04ce0f3f65c52fc93 {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00904.WGS.T C3L-00904 LSCC WGS tumor CPT0007740009 CPT0007740009.WholeGenome.RP-1303.bam 77689478636 BAM aligned CPTAC3 8c430265-6f06-4395-83f8-62e5026185f5 0eb5dd8c7eb16a61949c61d294cef935 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor"} -C3L-00904.WGS.T.hg38 C3L-00904 LSCC WGS tumor CPT0007740009 c643b5b9-f774-44bb-bb8c-a6ab9d1e0d29_gdc_realn.bam 116181554915 BAM harmonized CPTAC3 8cfd2c1c-4306-45b7-b393-c542321edf01 f803561c538cd0c27fd9bdfef3df037b {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor"} -C3L-00904.WXS.A C3L-00904 LSCC WXS tissue_normal CPT0007760006 CPT0007760006.WholeExome.RP-1303.bam 23276730135 BAM aligned CPTAC3 5a4ee34d-d226-4ce0-9709-951b14e55b9d c7416e99e065e297a7f8caa6fd3c87f1 {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.WXS.A.hg38 C3L-00904 LSCC WXS tissue_normal CPT0007760006 32e37138-84ae-40e3-9533-7d9be547c627_wxs_gdc_realn.bam 31242822161 BAM harmonized CPTAC3 d7c71375-e58a-4539-b9a3-b4adc306e9ad e0bec7ab994833ef57167dc869c85159 {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00904.WXS.N C3L-00904 LSCC WXS blood_normal CPT0002920002 CPT0002920002.WholeExome.RP-1303.bam 38625652500 BAM aligned CPTAC3 9db4423c-9921-4c09-b851-e45b82d8e942 d5faf4fd5bc4e162f414ffc0689b5683 {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00904.WXS.N.hg38 C3L-00904 LSCC WXS blood_normal CPT0002920002 a8847ec8-8718-435a-a1df-77690c4a60f1_gdc_realn.bam 52673035957 BAM harmonized CPTAC3 cb1142be-7646-47db-a541-3f6d19484c41 eec634d85483e1f702e664a7ee4ec242 {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00904.WXS.T C3L-00904 LSCC WXS tumor CPT0007740009 CPT0007740009.WholeExome.RP-1303.bam 38675301772 BAM aligned CPTAC3 faa875dd-7949-46ac-a2de-3afebfcad054 873ae42064900a529ba3d9ccaac202b2 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor"} -C3L-00904.WXS.T.hg38 C3L-00904 LSCC WXS tumor CPT0007740009 c643b5b9-f774-44bb-bb8c-a6ab9d1e0d29_gdc_realn.bam 52926343476 BAM harmonized CPTAC3 cc52b89d-2749-4217-b120-7dfb692d90fd 19a0aeda8c491fd57552c06bab5cf2c4 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor"} -C3L-00905.MethArray.Green.T C3L-00905 UCEC Methylation_Array tumor CPT0063380009 202184900127_R07C01_Grn.idat 13676247 IDAT Green NA CPTAC3 1a504680-547d-4cea-b104-424eb540a8ee b4c29d864c164c13669bf270a06f2fcd {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor"} -C3L-00905.MethArray.Red.T C3L-00905 UCEC Methylation_Array tumor CPT0063380009 202184900127_R07C01_Red.idat 13676247 IDAT Red NA CPTAC3 c86ccc49-b9da-47da-827a-3f96e1d04209 c51fab3dce53fdabe04e282e5fe31f5a {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor"} -C3L-00905.miRNA-Seq.S15_L003_R1.T C3L-00905 UCEC miRNA-Seq tumor CPT0063380006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCGTCC_S15_L003_R1_001.unaln.bam 176942130 BAM S15_L003_R1 unaligned CPTAC3 2c13ec78-1664-4361-80c4-c5ab987b3fc3 1e33be868fc5f8db2a7eb6d09bcdb854 {"aliquot_tag": "ALQ_b0c7d08d", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00905.miRNA-Seq.T.hg38 C3L-00905 UCEC miRNA-Seq tumor CPT0063380006 e3a9cb39-7876-43e0-a669-66479a9c979b_mirnaseq_gdc_realn.bam 192164908 BAM harmonized CPTAC3 25b5df8f-16ae-40ab-ade1-d6f5faf037b8 d4f7e13b575f09f25b371b2356522cfc {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.chimeric.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.chimeric.gdc_realn.bam 35656142 BAM chimeric harmonized CPTAC3 ddea5f5b-d102-4d1e-88ae-b3bcd13e718d 13faa286d880d2661a29be6a75dca02e {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.chimeric.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.chimeric.gdc_realn.bam 233099082 BAM chimeric harmonized CPTAC3 a200218e-a911-41eb-ada8-40ccb25fcabe 0e1f0d84d95c1de847c3e2bf784a5480 {"aliquot_tag": "ALQ_578a4a7e", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.genomic.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.genomic.gdc_realn.bam 9415295543 BAM genomic harmonized CPTAC3 9d918c73-afd0-4ed6-8545-9803bd9cc2da 05386e284f1cf2b823568ba2fbf67b53 {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.genomic.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.genomic.gdc_realn.bam 12312818817 BAM genomic harmonized CPTAC3 5118e854-6106-40d1-ba51-6707c87a2ff2 d13832c01bde08aff4f9c35d8b85aa62 {"aliquot_tag": "ALQ_578a4a7e", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.S2_L001_R1.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4353715474 FASTQ S2_L001_R1 unaligned CPTAC3 f8d21c9d-a65c-4aba-9cae-71eadbe611ff 3b04d0003a8e2d2e9c6cd16880d6a1d9 {"aliquot_tag": "ALQ_b0c7d08d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.S2_L001_R2.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4698026762 FASTQ S2_L001_R2 unaligned CPTAC3 b84dc177-6c03-40d2-ae16-83bb9e772349 7cca988f91f0effbc11250c8ea6d5115 {"aliquot_tag": "ALQ_b0c7d08d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.S56_R1.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R1_001.fastq.gz 7819556652 FASTQ S56_R1 unaligned CPTAC3 5a30bf74-cc23-4321-9d8a-ae2c550cda4c e98dd564429aceb5e8b0d5c46bc4e018 {"aliquot_tag": "ALQ_578a4a7e", "sample": "S56", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.S56_R2.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R2_001.fastq.gz 8127817898 FASTQ S56_R2 unaligned CPTAC3 da43598b-38df-4f50-815b-de5cea1e0172 23b5829f23c3c611f0a83a842580d28d {"aliquot_tag": "ALQ_578a4a7e", "sample": "S56", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.transcriptome.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.transcriptome.gdc_realn.bam 12317201178 BAM transcriptome harmonized CPTAC3 1acfadcb-28d3-4a48-b3c5-f86abc5ecf5f b33cb13405ce54f72d6c540254d6f9ac {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor"} -C3L-00905.RNA-Seq.transcriptome.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.transcriptome.gdc_realn.bam 7700146006 BAM transcriptome harmonized CPTAC3 3f8f94c8-ca1b-4a92-b08b-ded6169dfc1e 63b8493a2ba304f7cc2f01c75818555e {"aliquot_tag": "ALQ_578a4a7e", "gdc_sample_type": "Primary Tumor"} -C3L-00905.WGS.N C3L-00905 UCEC WGS blood_normal CPT0065250002 CPT0065250002.WholeGenome.RP-1303.bam 85081215327 BAM aligned CPTAC3 f804af1b-448e-4337-8ede-071f7c20dec1 d0c1cc0f3d050e2e9704d811a167ec2d {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00905.WGS.N.hg38 C3L-00905 UCEC WGS blood_normal CPT0065250002 609e24b7-042b-4088-a100-b55d5f0beaf5_gdc_realn.bam 130867023487 BAM harmonized CPTAC3 8db9ff3a-558c-4fdb-88e7-310c92350b3b b1dae9b03045d133a510fb724ec6e5c5 {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00905.WGS.T C3L-00905 UCEC WGS tumor CPT0063380009 CPT0063380009.WholeGenome.RP-1303.bam 77862105677 BAM aligned CPTAC3 b6580310-d583-46dc-ae4a-ad324d67abd7 d1274c00f9b2aca0248bb89479b9321e {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor"} -C3L-00905.WGS.T.hg38 C3L-00905 UCEC WGS tumor CPT0063380009 d678d221-9dbd-4e9f-8f94-9aaef5f7092f_gdc_realn.bam 120086520020 BAM harmonized CPTAC3 239efdc5-6656-41bd-acd4-c6ba3c99c4d0 546839f1f93050af7021508f3ba08563 {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor"} -C3L-00905.WXS.N C3L-00905 UCEC WXS blood_normal CPT0065250002 CPT0065250002.WholeExome.RP-1303.bam 37526675952 BAM aligned CPTAC3 bdecef95-6b45-4bb7-999b-c7685bce7a95 e6aad76a0dfe6e3467fe3a7b3d4e4300 {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00905.WXS.N.hg38 C3L-00905 UCEC WXS blood_normal CPT0065250002 609e24b7-042b-4088-a100-b55d5f0beaf5_gdc_realn.bam 50418178617 BAM harmonized CPTAC3 faace15d-2171-48b5-9abb-8eb89ca66633 509c443104258cf827f64332d0203f99 {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00905.WXS.T C3L-00905 UCEC WXS tumor CPT0063380009 CPT0063380009.WholeExome.RP-1303.bam 34460884251 BAM aligned CPTAC3 4a895a1d-f59c-4fd0-a759-929c8581c5dc e34cd1b2f1ddd589619a6b655e11516f {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor"} -C3L-00905.WXS.T.hg38 C3L-00905 UCEC WXS tumor CPT0063380009 d678d221-9dbd-4e9f-8f94-9aaef5f7092f_gdc_realn.bam 47057271603 BAM harmonized CPTAC3 e6585c40-504d-419a-b31d-bacbfadc10da 1ad1602013faea8f8556211d8d200d34 {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_4800c7b3.miRNA-Seq.S46_L005_R1.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064390006 200526_UNC32-K00270_0248_BHH7WFBBXY_TGACCA_S46_L005_R1_001.unaln.bam 210415246 BAM S46_L005_R1 unaligned CPTAC3 8e67a76b-8ab6-42e9-aa05-80c273d239fb 3553fa22fb259e75de8318f63fa8120e {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_4800c7b3.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064390006 35f9aacb-ffa9-4ec3-bbd7-e4e7f6087b73_mirnaseq_gdc_realn.bam 234059849 BAM harmonized CPTAC3 37d610e4-68c9-472b-9691-6a13bf1f6fe5 4baf645764070d0aaa2c1f3b7c7ab8eb {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_4800c7b3.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.chimeric.gdc_realn.bam 159872582 BAM chimeric harmonized CPTAC3 a58fbc89-5abc-4991-82ae-55904834ab94 c0cc72f57cf391ce402b306a8c6dd3f4 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_4800c7b3.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.genomic.gdc_realn.bam 6564599358 BAM genomic harmonized CPTAC3 bfb7339d-aa5c-4936-a8fa-92050d326e89 8b12f64e38a24dee6bd5c4f89c3a4ed4 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_4800c7b3.RNA-Seq.S28_L004_R1.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R1_001.fastq.gz 2953592785 FASTQ S28_L004_R1 unaligned CPTAC3 355dd7a7-51a6-45e8-994d-ab93fc4e99d7 606116e17c7f259a78022e253870d868 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_4800c7b3.RNA-Seq.S28_L004_R2.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R2_001.fastq.gz 3482612086 FASTQ S28_L004_R2 unaligned CPTAC3 d14ba0d0-db53-4b1a-8b2a-08d713dec9b2 455b041d2dfbd31acfd041986f77e413 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_4800c7b3.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.transcriptome.gdc_realn.bam 8188327581 BAM transcriptome harmonized CPTAC3 10edba28-0451-466a-bf85-9555f0f07efb 3d2eadccb52007ebd723f6745fe7ca8e {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_7560ee03.miRNA-Seq.S47_L005_R1.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064380006 200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L005_R1_001.unaln.bam 191519127 BAM S47_L005_R1 unaligned CPTAC3 9d07b5de-5ebb-4127-9dd5-9a8c7fc5df1c f5a6c5458a79c6d903f762380add573c {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_7560ee03.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064380006 9101a748-ac4f-4aa3-8abd-c6e4a3691619_mirnaseq_gdc_realn.bam 213798651 BAM harmonized CPTAC3 9816537d-3f5a-43a7-8e43-059f4f68d35a 1f9e4daf18948106d67bb08388d1b572 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_7560ee03.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.chimeric.gdc_realn.bam 94438029 BAM chimeric harmonized CPTAC3 52c36b7a-c3c9-489a-862d-e85c6482a31c 7819bf41e81720f650eb6308ad91e4b0 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_7560ee03.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.genomic.gdc_realn.bam 8535126053 BAM genomic harmonized CPTAC3 cb9423d8-22e7-423c-ab08-0d13d05f4507 0f488a4f07905e84f0c86d2350b9b775 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_7560ee03.RNA-Seq.S30_L004_R1.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R1_001.fastq.gz 3901703095 FASTQ S30_L004_R1 unaligned CPTAC3 26820d22-be01-42dd-a1a1-748d7932a7a8 caba787a84a06364298a07eda2b886c9 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_7560ee03.RNA-Seq.S30_L004_R2.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R2_001.fastq.gz 4614033820 FASTQ S30_L004_R2 unaligned CPTAC3 bdea7f13-83db-4fc4-93ff-f770fd4f0859 5d3ee7df4f3514b0bd4d281beb3ed2f7 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_7560ee03.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.transcriptome.gdc_realn.bam 11884504071 BAM transcriptome harmonized CPTAC3 a2ea7b64-7cb5-4a08-8b58-666f8bf1170b 1b07c9bf516a50e902194a35043a444b {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_d8bfda22.MethArray.Green.T C3L-00907 CCRCC Methylation_Array tumor CPT0064390009 204367460011_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6da1c805-b648-4d6d-881c-f05953da1760 899bd7010562363fd8d1b0828ffa20ad {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_d8bfda22.MethArray.Red.T C3L-00907 CCRCC Methylation_Array tumor CPT0064390009 204367460011_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 82484ee2-aadf-4c2c-8b92-5cb15a76c2c3 8e6deba29866e52e23ec0b7dbd0e1bbd {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_d8bfda22.WGS.T C3L-00907 CCRCC WGS tumor CPT0064390009 CPT0064390009.WholeGenome.RP-2158.bam 30013877702 BAM aligned CPTAC3 430cbc2f-d139-40e5-bc51-46ff4d499090 93cb0e2665edbadffbf51c093547b301 {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_d8bfda22.WGS.T.hg38 C3L-00907 CCRCC WGS tumor CPT0064390009 4c8a309f-acb1-4487-a2eb-69dcca1c3f3c_wgs_gdc_realn.bam 89345289973 BAM harmonized CPTAC3 90fc70a4-9ddb-4be1-b8a9-16c673ad8617 378c6cf9c7e105928022b430bea5b18b {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_d8bfda22.WXS.T C3L-00907 CCRCC WXS tumor CPT0064390009 CPT0064390009.WholeExome.RP-1303.bam 22086387660 BAM aligned CPTAC3 91890fd2-a52c-4107-a505-28abfc524cf7 33af2da0ae0511fc3afc67c438a2a9ad {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_d8bfda22.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064390009 4c8a309f-acb1-4487-a2eb-69dcca1c3f3c_wxs_gdc_realn.bam 30991151835 BAM harmonized CPTAC3 02cd1e72-e1ca-4196-8117-cb27e7e95a43 52432e3f77e3f70cdf1ed9ee126c3f87 {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_e5dff392.MethArray.Green.T C3L-00907 CCRCC Methylation_Array tumor CPT0064380009 204367490066_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e456fd25-c0ca-4a73-8a29-eafddc945ced 8db358b6ce23ca2c9c17c40aa4816693 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_e5dff392.MethArray.Red.T C3L-00907 CCRCC Methylation_Array tumor CPT0064380009 204367490066_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 382461a5-fb01-4644-8a02-154378e5224b 182712e63f7039c4b2dd9ae8340c95b1 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_e5dff392.WGS.T C3L-00907 CCRCC WGS tumor CPT0064380009 CPT0064380009.WholeGenome.RP-2158.bam 20601813023 BAM aligned CPTAC3 e04dd5ed-b752-451f-9d0c-9538c7075329 9f6286f527a649986053aca9ac444ce4 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_e5dff392.WGS.T.hg38 C3L-00907 CCRCC WGS tumor CPT0064380009 3bd9e2f6-ff3d-4e3a-86f3-9f790485e5b3_wgs_gdc_realn.bam 61226087823 BAM harmonized CPTAC3 36247662-605e-41a6-a11c-c21d65b9810f 16dc0aa7b85b47c03a8d7be4b84c6fdd {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_e5dff392.WXS.T C3L-00907 CCRCC WXS tumor CPT0064380009 CPT0064380009.WholeExome.RP-1303.bam 22329579570 BAM aligned CPTAC3 5e991954-3604-478b-aa3a-da2587b3a2e4 1d3b8b409fb421f1cd5bac210dc1d857 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.DUP_e5dff392.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064380009 3bd9e2f6-ff3d-4e3a-86f3-9f790485e5b3_wxs_gdc_realn.bam 30703740535 BAM harmonized CPTAC3 279b7249-0824-4011-875b-d68eea9bd141 1031e41375d1bdea124b273b2d425b4e {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-00907.MethArray.Green.A C3L-00907 CCRCC Methylation_Array tissue_normal CPT0064400009 203027380024_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 66404e28-1762-4b50-b93f-2cffeb05d3d0 16ad1934b92f02f20d339077dcf23de8 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.MethArray.Green.T C3L-00907 CCRCC Methylation_Array tumor CPT0064370006 202184990057_R07C01_Grn.idat 13676220 IDAT Green NA CPTAC3 2be4b73f-7c38-4e75-a90f-a28a47706fde ea8b4daf384a2e1b7215e169a211566a {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.MethArray.Red.A C3L-00907 CCRCC Methylation_Array tissue_normal CPT0064400009 203027380024_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 11973091-3dbe-40cc-bb3f-2ffa23d1316e f84eb2b9483169660cf02d00292a08d6 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.MethArray.Red.T C3L-00907 CCRCC Methylation_Array tumor CPT0064370006 202184990057_R07C01_Red.idat 13676220 IDAT Red NA CPTAC3 ca5bb86d-a65f-4dc8-b9e6-a26b23b189a5 50e26c02f7fac1eaa886f323b2ff0903 {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.miRNA-Seq.A.hg38 C3L-00907 CCRCC miRNA-Seq tissue_normal CPT0064400006 7d2fa96f-8c77-41ea-b87e-18c9fdee1e18_mirnaseq_gdc_realn.bam 263829993 BAM harmonized CPTAC3 3894e123-8f6f-4382-8ec0-6c2bc560f2ae 579faae718991c927a77667563c64a08 {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.miRNA-Seq.S23_L001_R1.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064370009 181113_UNC31-K00269_0164_AH23NNBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 198149818 BAM S23_L001_R1 unaligned CPTAC3 ddfbd273-8d32-4cbb-b0a4-29fc4dc150d7 3e0f4f8d69ed59753e01527bae860798 {"aliquot_tag": "ALQ_678f6443", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00907.miRNA-Seq.S6_L003_R1.A C3L-00907 CCRCC miRNA-Seq tissue_normal CPT0064400006 181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L003_R1_001.unaln.bam 235584971 BAM S6_L003_R1 unaligned CPTAC3 1fe3ad17-7b95-4b88-900f-cbfe636ef4f2 623ff7c7e53b0c0cc08030ef3d143a9d {"aliquot_tag": "ALQ_5815957a", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064370009 925ef109-71f3-481f-9ced-2381347c7acf_mirnaseq_gdc_realn.bam 217482390 BAM harmonized CPTAC3 e46a663f-66ee-4999-b00b-c6a80637e657 0d002596b826807586f23aa3bea8d19e {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor"} -C3L-00907.RNA-Seq.chimeric.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.chimeric.gdc_realn.bam 68201596 BAM chimeric harmonized CPTAC3 ac6952a8-6c86-4b80-ab6f-02bc718abaaa c34695384e85e0c473d16f5c56c437be {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.chimeric.gdc_realn.bam 28869846 BAM chimeric harmonized CPTAC3 f525d3db-5657-4c2d-a54f-1f1938005a71 51e9bcf572a9d460937c46a72fa082f8 {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor"} -C3L-00907.RNA-Seq.genomic.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.genomic.gdc_realn.bam 7977871036 BAM genomic harmonized CPTAC3 10ca97a7-9252-45ec-b052-b485d660a8a5 bc83a72903f38f9e811542a63df5af86 {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.genomic.gdc_realn.bam 7938993537 BAM genomic harmonized CPTAC3 7a09c5b9-3e7b-4ecc-80c2-0ed177908e7a 71fe80d94bf973c356a87ba1499724b8 {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor"} -C3L-00907.RNA-Seq.S19_L005_R1.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R1_001.fastq.gz 3806635927 FASTQ S19_L005_R1 unaligned CPTAC3 feff905e-00f6-45d8-a067-6d887961203d ab9709335139fcdb2bf7bb6c1523b380 {"aliquot_tag": "ALQ_678f6443", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00907.RNA-Seq.S19_L005_R2.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R2_001.fastq.gz 4134224462 FASTQ S19_L005_R2 unaligned CPTAC3 1ba5d8a7-958c-40af-958c-4d7c070debe4 00b0f359b42308f1f4fe23b44abc8dd3 {"aliquot_tag": "ALQ_678f6443", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.RNA-Seq.S22_L006_R1.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4116509305 FASTQ S22_L006_R1 unaligned CPTAC3 91e9deed-abfa-4e77-b5d0-771da7e6042c 4ab19a6ec5ecb68b7ddb4310aa5dfd64 {"aliquot_tag": "ALQ_5815957a", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.RNA-Seq.S22_L006_R2.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4550943116 FASTQ S22_L006_R2 unaligned CPTAC3 fb84b43b-fbda-42e2-a32a-9f031db8feff 3405b30fc9b9d748d43adfef6c94adfc {"aliquot_tag": "ALQ_5815957a", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.RNA-Seq.transcriptome.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.transcriptome.gdc_realn.bam 10693311581 BAM transcriptome harmonized CPTAC3 29b23fdc-51a9-49b0-a335-613a8d46b86d 90cc1ed9c4b8df53d0ca48505d1f0f62 {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.transcriptome.gdc_realn.bam 10885847771 BAM transcriptome harmonized CPTAC3 ef975ef0-8011-4c55-bc34-97f88b4a5248 dcdc1474825ef9bb40a9ed9f2a3d3680 {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor"} -C3L-00907.WGS.A C3L-00907 CCRCC WGS tissue_normal CPT0064400009 CPT0064400009.WholeGenome.RP-1303.bam 50519355214 BAM aligned CPTAC3 fa85506d-33dc-4156-9e80-46997b4d3de7 e91cbd580f8b719ee439b2da79bc870c {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.WGS.A.hg38 C3L-00907 CCRCC WGS tissue_normal CPT0064400009 bba5ddc0-4f69-4f42-a1c0-e4b9d9e6d3a8_wgs_gdc_realn.bam 73494321854 BAM harmonized CPTAC3 09e37da2-947b-4d6f-a750-189425191c8d e6c0dd4405f12fabcc912b55af3bc9de {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.WGS.N C3L-00907 CCRCC WGS blood_normal CPT0065420002 CPT0065420002.WholeGenome.RP-1303.bam 82098221617 BAM aligned CPTAC3 85f07b61-30ea-4a70-8c3e-69054183ffd0 01e6a9a3600401d607c308a4f57575d6 {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00907.WGS.N.hg38 C3L-00907 CCRCC WGS blood_normal CPT0065420002 9e37fe3b-588b-4e4b-87fb-8e427490226e_gdc_realn.bam 122362789392 BAM harmonized CPTAC3 46e1706a-3c72-49ff-b113-ee5dbd3d54cd 98436f094b55f8dc1636ee2011f55926 {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00907.WGS.T C3L-00907 CCRCC WGS tumor CPT0064370006 CPT0064370006.WholeGenome.RP-1303.bam 86634452438 BAM aligned CPTAC3 41a3173d-a77e-4d81-a19c-a1551badf77c 8072a06e5c4b280e9f478b1275bc1b4b {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.WGS.T.hg38 C3L-00907 CCRCC WGS tumor CPT0064370006 f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 133378094319 BAM harmonized CPTAC3 830945b1-40a1-4310-8c6a-d79dbbfb76d3 57f9311ddfc4c7af4815acaac4a644dc {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.WXS.A C3L-00907 CCRCC WXS tissue_normal CPT0064400009 CPT0064400009.WholeExome.RP-1303.bam 27602413638 BAM aligned CPTAC3 4b79ac8e-7a0a-4561-ba2c-0433d41ae2b9 03edcca0b00a4ba53fe0d590b3488ee0 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.WXS.A.hg38 C3L-00907 CCRCC WXS tissue_normal CPT0064400009 bba5ddc0-4f69-4f42-a1c0-e4b9d9e6d3a8_wxs_gdc_realn.bam 37587035086 BAM harmonized CPTAC3 135097d2-ba2f-4501-9f64-455c96ce7002 92de3954f79f6fed9471bbf621577926 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00907.WXS.N C3L-00907 CCRCC WXS blood_normal CPT0065420002 CPT0065420002.WholeExome.RP-1303.bam 31957245596 BAM aligned CPTAC3 98078c72-93d6-49b1-9d19-93ed16ee1393 166f4b6cc556066519811d7190094c61 {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00907.WXS.N.hg38 C3L-00907 CCRCC WXS blood_normal CPT0065420002 9e37fe3b-588b-4e4b-87fb-8e427490226e_gdc_realn.bam 43540660835 BAM harmonized CPTAC3 fd93766a-9f13-4593-8ef2-48d84271719c 6f55b9a84c93e42b9aca3f16f324fefe {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-00907.WXS.T C3L-00907 CCRCC WXS tumor CPT0064370006 CPT0064370006.WholeExome.RP-1303.bam 30791920405 BAM aligned CPTAC3 3c893cd0-8fcc-4193-8720-c43a53a4ac19 ea9ef374baf0ae54946dfe1b93719dc5 {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor"} -C3L-00907.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064370006 f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 42988709588 BAM harmonized CPTAC3 5b8f478a-209f-47bc-893b-5d7302cd4f79 73e343702883bd9a89a67d572341d3a7 {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor"} -C3L-00908.MethArray.Green.A C3L-00908 CCRCC Methylation_Array tissue_normal CPT0086370009 204930640120_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f014e7c0-4c1b-4617-abe5-91ded63ed4bc e8759bfcc75666c3142c4c5f0cab1ecb {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086360009 202184900140_R04C01_Grn.idat 13676261 IDAT Green NA CPTAC3 098f45d0-13aa-4ca2-bffb-34c3a6cf0d5c 422f67f93dce0336fc874f8268f16de0 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor"} -C3L-00908.MethArray.Red.A C3L-00908 CCRCC Methylation_Array tissue_normal CPT0086370009 204930640120_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 a850babf-9a42-4309-9233-7b545bf65142 22dc71b942b4c69cbd329eeddaebca01 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086360009 202184900140_R04C01_Red.idat 13676261 IDAT Red NA CPTAC3 b3e7012a-66b0-4023-a59d-a89ceb1b3118 b9cacbd7ef67594fc80421d8902b71de {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor"} -C3L-00908.miRNA-Seq.A.hg38 C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 173c0d6a-bc67-4a72-b6d3-b2a411e24785_mirnaseq_gdc_realn.bam 243270795 BAM harmonized CPTAC3 7e41687b-c9d2-451f-bd6c-473cc0c58f3d a33bf2470cb149afc4d3515a6ce83eff {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.miRNA-Seq.S13_L005_R1.A C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L005_R1_001.unaln.bam 213873054 BAM S13_L005_R1 unaligned CPTAC3 83df97b4-0757-4d5f-8698-cb7ea7a5feaf 64a1b3e4b04f3c60c019b96eb4768514 {"aliquot_tag": "ALQ_75257ac9", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.REP_9f5a3438.miRNA-Seq.S10_L005_R1.T C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L005_R1_001.unaln.bam 159592216 BAM S10_L005_R1 unaligned CPTAC3 c7baf5bf-ac47-4c48-8613-d1740624348a 918420f6333943bca22ee271d18db2a3 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_9f5a3438.miRNA-Seq.T.hg38 C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 33c921ea-b743-4d32-9c56-875de6028c71_mirnaseq_gdc_realn.bam 179925405 BAM harmonized CPTAC3 35b76590-bc93-4d51-86cc-58ea39c678b1 d9bb5104e97c611b1218318f1e27ea16 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_9f5a3438.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.chimeric.gdc_realn.bam 45129040 BAM chimeric harmonized CPTAC3 a6b2589f-1f32-4752-87b9-ac13b6d33182 3c245f4afa68d0aed264b220dcfb34db {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_9f5a3438.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.genomic.gdc_realn.bam 9460036479 BAM genomic harmonized CPTAC3 efedb251-7150-41ca-a7c7-cff5d9a558b3 f3607f5b80b51e4568f518bf7e8991cf {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R1.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R1_001.fastq.gz 4497335523 FASTQ S25_L007_R1 unaligned CPTAC3 7b04f1ce-15c3-43d2-9286-7a6d1f15e302 c0eb97ce345891af6daf78e0298b2701 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R2.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R2_001.fastq.gz 4812306259 FASTQ S25_L007_R2 unaligned CPTAC3 4ba00e47-13e7-4f56-b8c4-77d73ba76363 13c2d5dd46289aeb707903a147444417 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_9f5a3438.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.transcriptome.gdc_realn.bam 13467018138 BAM transcriptome harmonized CPTAC3 a45675b4-d9dd-434e-bf60-1f1ba99bb365 0ef4e483876a03dc88f363f98b2ed0a0 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-00908.RNA-Seq.chimeric.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.chimeric.gdc_realn.bam 81729999 BAM chimeric harmonized CPTAC3 15e54e5d-8151-45de-bedf-5c5b377f8cd1 2dbd687ffb1b37045ce45d0aaac7a94a {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.chimeric.gdc_realn.bam 41299237 BAM chimeric harmonized CPTAC3 27290952-fff8-42ed-a3aa-1876caa8dd40 0fde308c07c0790ad4c285ac0f4451ba {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor"} -C3L-00908.RNA-Seq.genomic.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.genomic.gdc_realn.bam 6920830541 BAM genomic harmonized CPTAC3 1358f298-f323-4428-ab6c-4c9c0d1a1c36 e8aebf888d077c9b4dc6a3e6aca0e56b {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.genomic.gdc_realn.bam 8713498273 BAM genomic harmonized CPTAC3 d6a6daab-f92b-4280-aef4-5754730368fd 403e5a66072f7c810ca03ffbb9afe13a {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor"} -C3L-00908.RNA-Seq.S12_L003_R1.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R1_001.fastq.gz 3538178356 FASTQ S12_L003_R1 unaligned CPTAC3 d7f5f1c4-4092-45ab-95f7-571f2aeb4b58 3be4f172a7798a029e44faabab7e5aec {"aliquot_tag": "ALQ_75257ac9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.RNA-Seq.S12_L003_R2.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R2_001.fastq.gz 3745507489 FASTQ S12_L003_R2 unaligned CPTAC3 d69e6d8c-0db1-43d0-817e-71306ba1e0b6 f9a0af7c4a60f562e361e9d71128b85f {"aliquot_tag": "ALQ_75257ac9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.RNA-Seq.S9_L006_R1.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R1_001.fastq.gz 4675518805 FASTQ S9_L006_R1 unaligned CPTAC3 afd5ee0e-563c-4238-876a-a1f103037d5b 18912a5c516d47a67af05aebd310cb6b {"aliquot_tag": "ALQ_48455379", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00908.RNA-Seq.S9_L006_R2.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R2_001.fastq.gz 5005750144 FASTQ S9_L006_R2 unaligned CPTAC3 0e355758-ba51-4012-8001-df2c458e6742 2266ab7b0e9619b251438371ca3c2118 {"aliquot_tag": "ALQ_48455379", "sample": "S9", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00908.RNA-Seq.transcriptome.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.transcriptome.gdc_realn.bam 8745017212 BAM transcriptome harmonized CPTAC3 d74134a6-43a0-4785-a963-2aa9076ae796 53bbccb224fcbd94a1ec370d6cee8cf8 {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.transcriptome.gdc_realn.bam 10307359310 BAM transcriptome harmonized CPTAC3 50c099e3-f37b-4e62-bf61-9f3730126961 96e93b8900ad9d3dc3ec5f7bdf06768b {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor"} -C3L-00908.WGS.A C3L-00908 CCRCC WGS tissue_normal CPT0086370009 CPT0086370009.WholeGenome.RP-1303.bam 55614160288 BAM aligned CPTAC3 cfc1cfce-10fe-4132-8a7d-f0c17f9769dc d53670a31e44a2b09fffee26ada8728e {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.WGS.A.hg38 C3L-00908 CCRCC WGS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wgs_gdc_realn.bam 83858918538 BAM harmonized CPTAC3 b76815f5-7f34-444f-b515-073f3c0fd55d bff453956793aeb5cb46435f151ba533 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.WGS.N C3L-00908 CCRCC WGS blood_normal CPT0087380001 CPT0087380001.WholeGenome.RP-1303.bam 69005389034 BAM aligned CPTAC3 54774f95-e0ed-4a0b-902c-c384803cae33 fd939819ecd82cdff5f16167e19f9c32 {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00908.WGS.N.hg38 C3L-00908 CCRCC WGS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 105491829001 BAM harmonized CPTAC3 d439db67-28d0-4b23-acfb-e87f913d6ada 5176c8427cd82b2796bd0e61c6334fcc {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00908.WGS.T C3L-00908 CCRCC WGS tumor CPT0086360009 CPT0086360009.WholeGenome.RP-1303.bam 89053374471 BAM aligned CPTAC3 b501f200-b532-4a5c-b0f2-7f0ff1c6bd64 536341c7701d23e9c9334d1e55743944 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor"} -C3L-00908.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 136492159740 BAM harmonized CPTAC3 4702b461-f88e-4036-87cd-c8fc4ee0b733 ed3f6a0865cdf184a800f7b9f5dfe402 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor"} -C3L-00908.WXS.A C3L-00908 CCRCC WXS tissue_normal CPT0086370009 CPT0086370009.WholeExome.RP-1303.bam 30544588614 BAM aligned CPTAC3 d4991d91-01ce-45a4-9b10-485aad476e6a b751d56da3f7b0ebb47da449ef7ed358 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.WXS.A.hg38 C3L-00908 CCRCC WXS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wxs_gdc_realn.bam 41542806405 BAM harmonized CPTAC3 07483db5-5911-49c3-ba62-ddbeb3f36763 a3f02afe2a04ad9f9a5262654dd86718 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00908.WXS.N C3L-00908 CCRCC WXS blood_normal CPT0087380001 CPT0087380001.WholeExome.RP-1303.bam 30365609689 BAM aligned CPTAC3 5e5c70f1-421b-455e-974a-a7f7782c2ddc d73d36afe6381f4b44e0561f695473a9 {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00908.WXS.N.hg38 C3L-00908 CCRCC WXS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 41730911569 BAM harmonized CPTAC3 9cf12b3e-3b97-4c25-ad51-d1eb46e5680d af151bc10b06cf1ddfa2b553fb3e4863 {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00908.WXS.T C3L-00908 CCRCC WXS tumor CPT0086360009 CPT0086360009.WholeExome.RP-1303.bam 29790261749 BAM aligned CPTAC3 f4f582bd-83a1-4d41-a4cb-8664d0d070a4 cd447af368efb58b7861fbbd2930fe80 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor"} -C3L-00908.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 41321920933 BAM harmonized CPTAC3 7b0b6dc8-1437-4e91-a429-7bd9a48baa58 1f015c2e7f09eb87b9b567a4ac6bddc9 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor"} -C3L-00910.MethArray.Green.A C3L-00910 CCRCC Methylation_Array tissue_normal CPT0007870009 203027390029_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 ce7a64d5-0c3d-4257-beae-974cf92bb974 ec32b0d8c542bf62478b8eef6c75e8e3 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.MethArray.Green.T C3L-00910 CCRCC Methylation_Array tumor CPT0007860009 202176290145_R03C01_Grn.idat 13676225 IDAT Green NA CPTAC3 da68f598-4293-4596-a38d-f04ed4cac2f8 b48a389dd72389b89727940929a235bf {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor"} -C3L-00910.MethArray.Red.A C3L-00910 CCRCC Methylation_Array tissue_normal CPT0007870009 203027390029_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 8a8605ac-fc32-4c40-bfa8-8f3df83d6a5b 47e4a67e542be95248284df8095e60f0 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.MethArray.Red.T C3L-00910 CCRCC Methylation_Array tumor CPT0007860009 202176290145_R03C01_Red.idat 13676225 IDAT Red NA CPTAC3 d723e119-becf-46ad-9696-9d49c38341d1 a5434b3a3350c0494894f2160b390011 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor"} -C3L-00910.miRNA-Seq.A.hg38 C3L-00910 CCRCC miRNA-Seq tissue_normal CPT0007870006 45aa7950-289e-47d5-a2e0-d276d46c5cf7_mirnaseq_gdc_realn.bam 219696000 BAM harmonized CPTAC3 fddaff9a-3ede-4884-99a3-e47ab867179a 3aca61e4d4308943465f546a1aa2ce6d {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.miRNA-Seq.S20_L005_R1.T C3L-00910 CCRCC miRNA-Seq tumor CPT0007860006 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L005_R1_001.unaln.bam 199920397 BAM S20_L005_R1 unaligned CPTAC3 4e3119e6-0699-437c-8b8d-406f74e35d58 f413db9a867c3267c23c80e607a60301 {"aliquot_tag": "ALQ_5710b3bb", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00910.miRNA-Seq.S42_L004_R1.A C3L-00910 CCRCC miRNA-Seq tissue_normal CPT0007870006 181108_UNC31-K00269_0163_BH23TVBBXY_TAATCG_S42_L004_R1_001.unaln.bam 195964642 BAM S42_L004_R1 unaligned CPTAC3 9e0546ae-feba-46f5-aea7-7dc39be9637c eb2b18c265992cdd44b1a0d045e81c49 {"aliquot_tag": "ALQ_6a709a0b", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.miRNA-Seq.T.hg38 C3L-00910 CCRCC miRNA-Seq tumor CPT0007860006 c1279fe0-477e-4cd6-a74b-8bafe92fa5ac_mirnaseq_gdc_realn.bam 220116694 BAM harmonized CPTAC3 9d91442b-8805-4b04-8ccf-17a01e1ee523 82dfb686ef393a717826d2d0e211699a {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor"} -C3L-00910.RNA-Seq.chimeric.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.chimeric.gdc_realn.bam 95399916 BAM chimeric harmonized CPTAC3 78d37770-7c21-478c-a132-29966cc2f161 3f1c82364c1c1f7002ad013ef80a868b {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.RNA-Seq.chimeric.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.chimeric.gdc_realn.bam 83131684 BAM chimeric harmonized CPTAC3 d77172d2-cf31-4c33-865a-d089e8bb0fa5 d28a80d58082e0ad9c9c2c750a13eaa4 {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor"} -C3L-00910.RNA-Seq.genomic.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.genomic.gdc_realn.bam 7908935065 BAM genomic harmonized CPTAC3 0e814afa-6f21-491a-a029-ae264e9bc6d7 690643d8fe0fe6faa196d1c70ed2b42e {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.RNA-Seq.genomic.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.genomic.gdc_realn.bam 10518278293 BAM genomic harmonized CPTAC3 f005ebf1-b806-4ec5-ae90-6cdd4a4499c2 dff01841d5195bea110c3d8da7843c54 {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor"} -C3L-00910.RNA-Seq.S43_L004_R1.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R1_001.fastq.gz 4001058274 FASTQ S43_L004_R1 unaligned CPTAC3 3730b063-50d4-4a07-aecc-38fa8c8cb9d7 87ee7cc241a1ae8d6989f2fc8d4465a7 {"aliquot_tag": "ALQ_6a709a0b", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.RNA-Seq.S43_L004_R2.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R2_001.fastq.gz 4005216188 FASTQ S43_L004_R2 unaligned CPTAC3 d2dc565a-5504-487a-bcf8-76a09155b440 5867f39f14427ba58e0f5146f1e4aaab {"aliquot_tag": "ALQ_6a709a0b", "sample": "S43", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.RNA-Seq.S5_L002_R1.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R1_001.fastq.gz 5135403695 FASTQ S5_L002_R1 unaligned CPTAC3 0a8bfa04-4555-4df3-9b8c-6b889b56e524 4b4d3f2f9ceffcedbeb21b9278fa5521 {"aliquot_tag": "ALQ_5710b3bb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00910.RNA-Seq.S5_L002_R2.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R2_001.fastq.gz 5573420983 FASTQ S5_L002_R2 unaligned CPTAC3 9fcf3a6b-36d5-487e-b884-ed8fd820cef1 b2b252b6f29be49cc56c00116848e710 {"aliquot_tag": "ALQ_5710b3bb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00910.RNA-Seq.transcriptome.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.transcriptome.gdc_realn.bam 9815764250 BAM transcriptome harmonized CPTAC3 7144c502-5db2-47d5-b185-6eac8513758e b2c8cf5ee63de27c5084fe79f3b7244d {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.RNA-Seq.transcriptome.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.transcriptome.gdc_realn.bam 14513257300 BAM transcriptome harmonized CPTAC3 a37bcda9-2d50-4030-89f7-b2a496979ff7 1f35bc3fc8776b2fa125e09ae340aff0 {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor"} -C3L-00910.WGS.A C3L-00910 CCRCC WGS tissue_normal CPT0007870009 CPT0007870009.WholeGenome.RP-1303.bam 60782507590 BAM aligned CPTAC3 78ec418d-7830-4f16-8159-04d973c573b8 fb0e39710ace281073c4d0b46e3ec50f {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.WGS.A.hg38 C3L-00910 CCRCC WGS tissue_normal CPT0007870009 9039addf-b905-4979-b0ec-8d2f9424bbff_wgs_gdc_realn.bam 89398034499 BAM harmonized CPTAC3 5fe2f086-d372-4df1-9803-27e162da85b3 2626851fbff14c269107de022134c197 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.WGS.N C3L-00910 CCRCC WGS blood_normal CPT0002930002 CPT0002930002.WholeGenome.RP-1303.bam 59612869733 BAM aligned CPTAC3 3250f607-2070-4438-9a47-7621a55740f2 53444d2a7f3d356d491e524422ede787 {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00910.WGS.N.hg38 C3L-00910 CCRCC WGS blood_normal CPT0002930002 bae124ef-545f-4ee7-b213-6cc7a8318785_gdc_realn.bam 87466587126 BAM harmonized CPTAC3 3a79d49e-03d5-4684-9fb2-7039f09e059a 7497e1b9bc3238ae0ee4f50c9c3b9eef {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00910.WGS.T C3L-00910 CCRCC WGS tumor CPT0007860009 CPT0007860009.WholeGenome.RP-1303.bam 57272428769 BAM aligned CPTAC3 1ecf027d-0067-4bb6-bf58-66df2d234179 d9a01f3f8a7de017329e3747783870f6 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor"} -C3L-00910.WGS.T.hg38 C3L-00910 CCRCC WGS tumor CPT0007860009 0e1ef677-2bda-46f2-b966-2aeecae64ba3_gdc_realn.bam 83031536236 BAM harmonized CPTAC3 6e016003-caf6-4de6-9e9c-c661a806ef59 e6b08d9262f3e9eb1217277a11ff9c4f {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor"} -C3L-00910.WXS.A C3L-00910 CCRCC WXS tissue_normal CPT0007870009 CPT0007870009.WholeExome.RP-1303.bam 37100414017 BAM aligned CPTAC3 afb6cc79-fa0d-4e72-b7be-84b7f5d78f07 2568e02d09b4563ec6254ef173b58b03 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.WXS.A.hg38 C3L-00910 CCRCC WXS tissue_normal CPT0007870009 9039addf-b905-4979-b0ec-8d2f9424bbff_wxs_gdc_realn.bam 51473588558 BAM harmonized CPTAC3 27fbdf8a-939a-4ca9-80e3-b4c793e5a834 bbe3cbe1ee5a00a70b0e5e3c37cabade {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00910.WXS.N C3L-00910 CCRCC WXS blood_normal CPT0002930002 CPT0002930002.WholeExome.RP-1303.bam 29345694268 BAM aligned CPTAC3 957e9fda-2c54-4fe9-bb1d-6e83f0a2fb22 9fe91e402686029a915279ac4976ce7f {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00910.WXS.N.hg38 C3L-00910 CCRCC WXS blood_normal CPT0002930002 bae124ef-545f-4ee7-b213-6cc7a8318785_gdc_realn.bam 40941856182 BAM harmonized CPTAC3 a830ee67-80a9-452b-8f2c-7c54d60e85bc 94cec3489b57aa0412db09083dd35897 {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-00910.WXS.T C3L-00910 CCRCC WXS tumor CPT0007860009 CPT0007860009.WholeExome.RP-1303.bam 28406604859 BAM aligned CPTAC3 8bc9b1cb-7112-412d-8b22-439db34e8446 d86cf084a4e8d0f2cb3360a73da68211 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor"} -C3L-00910.WXS.T.hg38 C3L-00910 CCRCC WXS tumor CPT0007860009 0e1ef677-2bda-46f2-b966-2aeecae64ba3_gdc_realn.bam 38709980772 BAM harmonized CPTAC3 f4679565-9c0b-4a57-81dd-a7874201e89a c6a2e38aa580dea330782b45bf7efd05 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor"} -C3L-00913.MethArray.Green.A C3L-00913 LUAD Methylation_Array tissue_normal CPT0106100008 203027390120_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e0ef6852-4b26-445f-b98c-0cac27ef97a8 887369a7a9a5d319a739c41fae2138b1 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.MethArray.Green.T C3L-00913 LUAD Methylation_Array tumor CPT0106110009 202234380054_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e7da3749-5514-4f72-a487-f1b6a9fe1206 d6f4d812357052c1662ed46815b08d43 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor"} -C3L-00913.MethArray.Red.A C3L-00913 LUAD Methylation_Array tissue_normal CPT0106100008 203027390120_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 561aa0c4-594b-4c5c-83ad-bc7893e19b04 27abc183eae8e951ce5ba9b81d2ad762 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.MethArray.Red.T C3L-00913 LUAD Methylation_Array tumor CPT0106110009 202234380054_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 ebbc91fd-10e1-4dbb-a7c3-213220b1920a fc72f7138ed51b2a4da881b37a81fa31 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor"} -C3L-00913.miRNA-Seq.A.hg38 C3L-00913 LUAD miRNA-Seq tissue_normal CPT0106100006 af35fe2c-577f-4af2-8f10-f09337793517_mirnaseq_gdc_realn.bam 257554622 BAM harmonized CPTAC3 f4d531ec-fa88-40d7-9df0-58b778598f03 b29b254b5c9b3e0b1df9c2c267cf4999 {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.miRNA-Seq.S14_L007_R1.A C3L-00913 LUAD miRNA-Seq tissue_normal CPT0106100006 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L007_R1_001.unaln.bam 235493064 BAM S14_L007_R1 unaligned CPTAC3 c3f1a783-7f56-480c-a737-951cb964ad44 c702577743b3a93b0ac52305407f707b {"aliquot_tag": "ALQ_4e530824", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.miRNA-Seq.S43_L007_R1.T C3L-00913 LUAD miRNA-Seq tumor CPT0106110006 181108_UNC31-K00269_0163_BH23TVBBXY_TACAGC_S43_L007_R1_001.unaln.bam 176735347 BAM S43_L007_R1 unaligned CPTAC3 786242cb-2575-4e71-a955-a10cb47e508d 53877f8c03a857556efec796dbcc1353 {"aliquot_tag": "ALQ_73332194", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00913.miRNA-Seq.T.hg38 C3L-00913 LUAD miRNA-Seq tumor CPT0106110006 f9312019-a312-4c83-b179-ce0a3bac8624_mirnaseq_gdc_realn.bam 197483472 BAM harmonized CPTAC3 aa7890fa-113f-4b8c-a989-c2434e60991b 551ba297c9a37d6fcb87f1868d5d820b {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor"} -C3L-00913.RNA-Seq.chimeric.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.chimeric.gdc_realn.bam 94964374 BAM chimeric harmonized CPTAC3 37bfaf8a-7416-4385-b40f-88fb06c45f87 5bfd8db8624594bfc866dbfdb92fac43 {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.RNA-Seq.chimeric.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.chimeric.gdc_realn.bam 35924762 BAM chimeric harmonized CPTAC3 974cb715-8c29-4e2f-a4c8-19beb2bf43e1 80b79bf9bc19c237b302bc951f088851 {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor"} -C3L-00913.RNA-Seq.genomic.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.genomic.gdc_realn.bam 8270843262 BAM genomic harmonized CPTAC3 e1dff40e-5128-4d74-a0a6-715ea7967504 0798306b74c27ee46509527f1e0a16ed {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.RNA-Seq.genomic.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.genomic.gdc_realn.bam 8283900773 BAM genomic harmonized CPTAC3 f37213f9-6f72-4684-84c8-487854b332d6 4762e17fc08cf653e20e5f6120e0694c {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor"} -C3L-00913.RNA-Seq.S10_L003_R1.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R1_001.fastq.gz 4198775387 FASTQ S10_L003_R1 unaligned CPTAC3 ca975c52-262a-4714-acaa-fc16d9c42fe8 8c5a0684028d94b51b317d40f0ddb225 {"aliquot_tag": "ALQ_4e530824", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.RNA-Seq.S10_L003_R2.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R2_001.fastq.gz 4651665309 FASTQ S10_L003_R2 unaligned CPTAC3 b5734aa7-9f6b-43f4-b1db-2bae2c858440 17a73b0372abaa7477c7b37882313cf1 {"aliquot_tag": "ALQ_4e530824", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.RNA-Seq.S19_L005_R1.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3513974649 FASTQ S19_L005_R1 unaligned CPTAC3 8bd0cbdd-4252-47f9-9abe-b62369d87078 755591d5785a65391bb22e66cfdfa0d5 {"aliquot_tag": "ALQ_73332194", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00913.RNA-Seq.S19_L005_R2.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3932200443 FASTQ S19_L005_R2 unaligned CPTAC3 768234aa-5b23-49f2-a44e-c51d7fad1ba8 c74d3e24b12310885a72a84660bece7f {"aliquot_tag": "ALQ_73332194", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00913.RNA-Seq.transcriptome.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.transcriptome.gdc_realn.bam 10624508966 BAM transcriptome harmonized CPTAC3 53a4c409-846c-4d4e-bf25-c70065f47a5f 13c60f454f1e24492ab38fd4c6cbf4ed {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.RNA-Seq.transcriptome.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.transcriptome.gdc_realn.bam 10418999370 BAM transcriptome harmonized CPTAC3 02459e8f-2abe-412d-affa-46cb665ab3d1 9ba500efdb66ff7fd34fbab3d686f155 {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor"} -C3L-00913.WGS.A C3L-00913 LUAD WGS tissue_normal CPT0106100008 CPT0106100008.WholeGenome.RP-1303.bam 57899224769 BAM aligned CPTAC3 9c1f4a13-9395-4399-9cf6-e3cef8c7996b 03e5d24386042b1cb59efe4899d09cb5 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.WGS.A.hg38 C3L-00913 LUAD WGS tissue_normal CPT0106100008 1cc1dfd5-2037-4c9f-91de-bb275a30e38e_wgs_gdc_realn.bam 85213498620 BAM harmonized CPTAC3 ad01a95f-3c61-44da-aa07-f063e6c82e3b 2db9621d161b3524ceab93538fe682a7 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.WGS.N C3L-00913 LUAD WGS blood_normal CPT0107080002 CPT0107080002.WholeGenome.RP-1303.bam 65787204824 BAM aligned CPTAC3 cf2a1ac2-8256-4355-a11b-f7312b0d8a93 7c93e4b3a0b62c0da721879a512311f2 {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal"} -C3L-00913.WGS.N.hg38 C3L-00913 LUAD WGS blood_normal CPT0107080002 84a2ecc7-55f4-4985-810f-c38e9258e6bb_wgs_gdc_realn.bam 96270239900 BAM harmonized CPTAC3 113ddb52-9242-45d9-a09f-fef793fefa30 ab9364d90f7db635aca5e74a3c01add5 {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal"} -C3L-00913.WGS.T C3L-00913 LUAD WGS tumor CPT0106110009 CPT0106110009.WholeGenome.RP-1303.bam 71418925914 BAM aligned CPTAC3 1f5662dd-f2b7-4e53-8094-3e848944110a 1c17f23dcc608bba8007b721aee8fa60 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor"} -C3L-00913.WGS.T.hg38 C3L-00913 LUAD WGS tumor CPT0106110009 875fe663-c1d0-4ea7-825e-a718f4a7c4a2_wgs_gdc_realn.bam 104860154604 BAM harmonized CPTAC3 1475f55f-5ead-4a97-adc7-667b5ccd60ce d0f7a894e16af98a95275a8fe68f5ede {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor"} -C3L-00913.WXS.A C3L-00913 LUAD WXS tissue_normal CPT0106100008 CPT0106100008.WholeExome.RP-1303.bam 34916961122 BAM aligned CPTAC3 29c787d9-7666-435a-9a12-3e29fe113264 2de62eed28bf400ed8f9d37453dce01d {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.WXS.A.hg38 C3L-00913 LUAD WXS tissue_normal CPT0106100008 1cc1dfd5-2037-4c9f-91de-bb275a30e38e_wxs_gdc_realn.bam 47339339748 BAM harmonized CPTAC3 a95a7ee7-b3fe-4eef-afbd-d504d39a6f92 840446376cc5395e368e4ad65049230b {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00913.WXS.N C3L-00913 LUAD WXS blood_normal CPT0107080002 CPT0107080002.WholeExome.RP-1303.bam 34088375727 BAM aligned CPTAC3 58613a1c-49a7-40dd-956b-531bc4361272 a79d5ffa9df908666475e80a8c28da61 {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal"} -C3L-00913.WXS.N.hg38 C3L-00913 LUAD WXS blood_normal CPT0107080002 84a2ecc7-55f4-4985-810f-c38e9258e6bb_wxs_gdc_realn.bam 44439910332 BAM harmonized CPTAC3 8718dc36-49b1-434b-8b54-112473c424fb fd046b4052279829d58e7dc0e078db4a {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal"} -C3L-00913.WXS.T C3L-00913 LUAD WXS tumor CPT0106110009 CPT0106110009.WholeExome.RP-1303.bam 39572813513 BAM aligned CPTAC3 51c23287-762d-4687-a202-6a359fa4dad1 bdb8c45d82bf162482ab175ac1db2981 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor"} -C3L-00913.WXS.T.hg38 C3L-00913 LUAD WXS tumor CPT0106110009 875fe663-c1d0-4ea7-825e-a718f4a7c4a2_wxs_gdc_realn.bam 55521480077 BAM harmonized CPTAC3 08a37787-06e2-4bf3-8918-08cd27e8f024 63d285329a2cebc8b104fbe938da21e1 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor"} -C3L-00917.MethArray.Green.A C3L-00917 CCRCC Methylation_Array tissue_normal CPT0023710009 203027380024_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 0254d96d-d35d-4bcf-bddd-53b1c5a133b5 fb7b9854a85e64948044be75a21dda8c {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.MethArray.Green.T C3L-00917 CCRCC Methylation_Array tumor CPT0023690006 202163530118_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a4acdcb7-ceef-455c-b95b-e0c26c96ff77 611ae5a3f17f3398efbc7ce9b6c441b2 {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor"} -C3L-00917.MethArray.Red.A C3L-00917 CCRCC Methylation_Array tissue_normal CPT0023710009 203027380024_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 d81a2c35-7db0-4310-96e7-f6e0daf6c504 b820c92e5d69f73573829fc2c198fb05 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.MethArray.Red.T C3L-00917 CCRCC Methylation_Array tumor CPT0023690006 202163530118_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 6b008140-64d6-4179-9185-90f44e012e09 9d03ed061a8321af4221e6fb9e423188 {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor"} -C3L-00917.miRNA-Seq.A.hg38 C3L-00917 CCRCC miRNA-Seq tissue_normal CPT0023710006 61fd5b56-5683-4f1a-bb58-b55e17697515_mirnaseq_gdc_realn.bam 184383902 BAM harmonized CPTAC3 521935a3-6a08-4ca9-adf3-8e8e8610b203 1f4e870084d1597bf52dd4d6df2f9ff3 {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.miRNA-Seq.S44_L004_R1.T C3L-00917 CCRCC miRNA-Seq tumor CPT0023690009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGGCC_S44_L004_R1_001.unaln.bam 179568053 BAM S44_L004_R1 unaligned CPTAC3 d03a8b3c-b15c-4fcd-ab8e-4ce5ebe6b27b 48e1adebf562ea202286ba5d5db9e275 {"aliquot_tag": "ALQ_c99f7be5", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00917.miRNA-Seq.S4_L003_R1.A C3L-00917 CCRCC miRNA-Seq tissue_normal CPT0023710006 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L003_R1_001.unaln.bam 167528156 BAM S4_L003_R1 unaligned CPTAC3 41cb9eb5-6f16-4727-8631-18063710fef8 a8d70d47124ca3758c1c832c7cc26792 {"aliquot_tag": "ALQ_a20cfe10", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.miRNA-Seq.T.hg38 C3L-00917 CCRCC miRNA-Seq tumor CPT0023690009 12d298f2-5f27-4c87-888c-2ee9f6d11062_mirnaseq_gdc_realn.bam 202177662 BAM harmonized CPTAC3 6a475c9c-bfd8-4ba9-a21f-507e6a3b344c b55852efddb82e9d1cb023a1f99a53c2 {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor"} -C3L-00917.RNA-Seq.chimeric.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.chimeric.gdc_realn.bam 59891779 BAM chimeric harmonized CPTAC3 eeda21d1-e364-41fb-aef5-09cbea506248 6f4dda04fc3a7cdad73c79bbad29157e {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.RNA-Seq.chimeric.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.chimeric.gdc_realn.bam 50591479 BAM chimeric harmonized CPTAC3 650e7638-3a47-45a8-9f38-b9203d3d8a87 4a0778659f4f350cd82e6bb07d9089c2 {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor"} -C3L-00917.RNA-Seq.genomic.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.genomic.gdc_realn.bam 7589080173 BAM genomic harmonized CPTAC3 21105199-9c22-40b7-bbe2-2afdaff7df6a aca73a1c18d87797a1c1821647276cef {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.RNA-Seq.genomic.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.genomic.gdc_realn.bam 6841282923 BAM genomic harmonized CPTAC3 8e4c6f57-04d1-463d-b956-84b9af13b922 7b27edad141e7cda9b99788a8008891a {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor"} -C3L-00917.RNA-Seq.S12_L008_R1.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R1_001.fastq.gz 3118278132 FASTQ S12_L008_R1 unaligned CPTAC3 1ed2a869-4360-4d55-bd87-c57a892bc3f3 00deeae1442e1c427fec97538998270d {"aliquot_tag": "ALQ_c99f7be5", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00917.RNA-Seq.S12_L008_R2.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R2_001.fastq.gz 3416970953 FASTQ S12_L008_R2 unaligned CPTAC3 03e6f81f-9409-49d1-ba62-339159496523 2c695063e80464d6b3d8fb1fd2da49b3 {"aliquot_tag": "ALQ_c99f7be5", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00917.RNA-Seq.S21_L006_R1.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R1_001.fastq.gz 3859648612 FASTQ S21_L006_R1 unaligned CPTAC3 22c8d9e9-33e6-4d4b-beaa-b4f1dfcc58ae 4b975fd02e5a59ea986772428e19ccb9 {"aliquot_tag": "ALQ_a20cfe10", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.RNA-Seq.S21_L006_R2.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R2_001.fastq.gz 4263783129 FASTQ S21_L006_R2 unaligned CPTAC3 c146ca79-3096-425f-ad59-0c5fe7967560 2a95304b5d3139787fdebf0def84b20a {"aliquot_tag": "ALQ_a20cfe10", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.RNA-Seq.transcriptome.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.transcriptome.gdc_realn.bam 9865971585 BAM transcriptome harmonized CPTAC3 9cbc32b2-07c1-4b3a-9384-41542a6cfd8a 663abbb3afebbf4280d5367c299e7500 {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.RNA-Seq.transcriptome.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.transcriptome.gdc_realn.bam 8285211558 BAM transcriptome harmonized CPTAC3 b90bc3f2-aca8-4167-aa9d-6b0e4cfc8083 7b410e0ea3cea322bfdb996e2ef7a0bd {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor"} -C3L-00917.WGS.A C3L-00917 CCRCC WGS tissue_normal CPT0023710009 CPT0023710009.WholeGenome.RP-1303.bam 64447326962 BAM aligned CPTAC3 5cbc0f98-0158-473e-94a4-fa97231d503a ffd51e3a65e29578bfda0abecf411e5c {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.WGS.A.hg38 C3L-00917 CCRCC WGS tissue_normal CPT0023710009 429fb668-d2e2-4795-a428-381b42a59d9c_wgs_gdc_realn.bam 93068977366 BAM harmonized CPTAC3 2e205986-8edc-41d8-9b3a-014c403e74b9 eba526029b13318a7cb8f97e42aad117 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.WGS.N C3L-00917 CCRCC WGS blood_normal CPT0024600002 CPT0024600002.WholeGenome.RP-1303.bam 58201632564 BAM aligned CPTAC3 a8d5ae99-06e4-4e77-9a8e-852d5bc94c40 c6de275523e0a018d39e878bf1d5e8d9 {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal"} -C3L-00917.WGS.N.hg38 C3L-00917 CCRCC WGS blood_normal CPT0024600002 cc236dce-92c9-4fa9-ad90-39b91962c931_gdc_realn.bam 83977506410 BAM harmonized CPTAC3 e48eecca-694f-4ede-9b35-bc42b70d4e1a 083336ddcc766cfee1f8674731fd5b45 {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal"} -C3L-00917.WGS.T C3L-00917 CCRCC WGS tumor CPT0023690006 CPT0023690006.WholeGenome.RP-1303.bam 68503465181 BAM aligned CPTAC3 f93778fd-48f3-4e90-83e4-07cf758bd62f ecec69ac43f48e6510acef95380939ef {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor"} -C3L-00917.WGS.T.hg38 C3L-00917 CCRCC WGS tumor CPT0023690006 308dd895-cf14-467d-93c0-50c795c9a126_gdc_realn.bam 99465304548 BAM harmonized CPTAC3 b2fe9d25-dbb5-4e32-a93f-dd0cbb75a4f0 d23463ce53a5bfeb1db42c30eddb1728 {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor"} -C3L-00917.WXS.A C3L-00917 CCRCC WXS tissue_normal CPT0023710009 CPT0023710009.WholeExome.RP-1303.bam 25317917691 BAM aligned CPTAC3 cc05937b-444e-45d1-b035-df0cc1d8e207 eaa14310fe162d0d28e4bb720e463f52 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.WXS.A.hg38 C3L-00917 CCRCC WXS tissue_normal CPT0023710009 429fb668-d2e2-4795-a428-381b42a59d9c_wxs_gdc_realn.bam 34708479588 BAM harmonized CPTAC3 b58c26a8-238d-45d4-9edb-eccbd286fac0 f57732ab746109d9e309a0c1ec6874b3 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00917.WXS.N C3L-00917 CCRCC WXS blood_normal CPT0024600002 CPT0024600002.WholeExome.RP-1303.bam 26657264094 BAM aligned CPTAC3 fb25c67e-3318-4905-a1ba-276fcd36de38 810c25ea093a3efb61933c581fbf9141 {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal"} -C3L-00917.WXS.N.hg38 C3L-00917 CCRCC WXS blood_normal CPT0024600002 cc236dce-92c9-4fa9-ad90-39b91962c931_gdc_realn.bam 36499893934 BAM harmonized CPTAC3 a1d33167-c9e0-4071-a1d3-4b562d355f98 b54403942f05b99a5948c1807ec946ac {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal"} -C3L-00917.WXS.T C3L-00917 CCRCC WXS tumor CPT0023690006 CPT0023690006.WholeExome.RP-1303.bam 19899553372 BAM aligned CPTAC3 9ba4ef5f-56c3-46b9-a920-ad499fb80b72 e218a35cd6167026b826e7aa12b5ac4f {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor"} -C3L-00917.WXS.T.hg38 C3L-00917 CCRCC WXS tumor CPT0023690006 308dd895-cf14-467d-93c0-50c795c9a126_gdc_realn.bam 27011736708 BAM harmonized CPTAC3 0efdc6a1-9dec-4891-8a54-43cd13d0b2d7 71991c1a7d80438c640af45ed6628bbe {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor"} -C3L-00918.MethArray.Green.T C3L-00918 UCEC Methylation_Array tumor CPT0063790006 202184900128_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bd8499ce-cc04-40ff-a759-3a22d1372c91 0e28d1e0a2d0bd01125fb37294537a91 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor"} -C3L-00918.MethArray.Red.T C3L-00918 UCEC Methylation_Array tumor CPT0063790006 202184900128_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 fcb08e1f-7577-4eb9-8f28-56b92d41baf0 5ba0c13441821b360431f4d25ece38a1 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor"} -C3L-00918.miRNA-Seq.S9_L003_R1.T C3L-00918 UCEC miRNA-Seq tumor CPT0063790009 180924_UNC31-K00269_0154_AHWTMLBBXX_CGTACG_S9_L003_R1_001.unaln.bam 160340862 BAM S9_L003_R1 unaligned CPTAC3 1da37b31-2a59-420e-b06f-e1d2f968f0f3 5614070dfbd976de1be45760feb33591 {"aliquot_tag": "ALQ_8689a6ba", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00918.miRNA-Seq.T.hg38 C3L-00918 UCEC miRNA-Seq tumor CPT0063790009 37e43244-d726-4ce9-b0e3-b7f3491f30b1_mirnaseq_gdc_realn.bam 176368410 BAM harmonized CPTAC3 73dc29a5-63ea-4b2e-88ba-8e62702b9c4b 35f7cdae02eb2d1b9f3370b42bfe3e1a {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor"} -C3L-00918.RNA-Seq.chimeric.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.chimeric.gdc_realn.bam 27457584 BAM chimeric harmonized CPTAC3 d3fed3a7-c320-4efc-ad5e-6a72fd6c3607 8a6e4b0e51ff2754b7f7839ab7313301 {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor"} -C3L-00918.RNA-Seq.genomic.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.genomic.gdc_realn.bam 8762291204 BAM genomic harmonized CPTAC3 d30d9a23-8eb8-4b4b-9599-da8bd63d182a 1580e516534f1ac43b833e12f2d39568 {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor"} -C3L-00918.RNA-Seq.S7_L008_R1.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 4242039089 FASTQ S7_L008_R1 unaligned CPTAC3 3d47af04-fe23-4f4d-8ec2-66420dd82fef 1a8666ab9cfac332927285822c8d2098 {"aliquot_tag": "ALQ_8689a6ba", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00918.RNA-Seq.S7_L008_R2.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 4500612852 FASTQ S7_L008_R2 unaligned CPTAC3 83a66e82-d19f-4dcd-bf04-33397c2160a9 feb25e2ab02df40ea16d2708d0086b64 {"aliquot_tag": "ALQ_8689a6ba", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00918.RNA-Seq.transcriptome.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.transcriptome.gdc_realn.bam 11919775610 BAM transcriptome harmonized CPTAC3 d955648a-ee6d-4bda-89f7-0c9fc4044875 624f5d3242d8622b99fecf3ecaa92567 {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor"} -C3L-00918.WGS.N C3L-00918 UCEC WGS blood_normal CPT0065320002 CPT0065320002.WholeGenome.RP-1303.bam 78838790842 BAM aligned CPTAC3 c3ee861e-3b26-4c51-9575-01f0f1973a6a 39067f406b2e2c07ce9a8aba12c2271e {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00918.WGS.N.hg38 C3L-00918 UCEC WGS blood_normal CPT0065320002 58bc0d8e-4cae-4a40-bc4a-2025637ff81d_gdc_realn.bam 122382006922 BAM harmonized CPTAC3 c04969da-c28a-4e6b-9b1a-cec0d56df395 f858811d394f1e75cc7fb715b6bb1114 {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00918.WGS.T C3L-00918 UCEC WGS tumor CPT0063790006 CPT0063790006.WholeGenome.RP-1303.bam 76722463278 BAM aligned CPTAC3 7fc416ab-e022-4409-8271-ac2a219895db 56b415d183ae355ed99ce02c072fbcbd {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor"} -C3L-00918.WGS.T.hg38 C3L-00918 UCEC WGS tumor CPT0063790006 2d192478-8285-48eb-855b-40b8ce2a42a0_gdc_realn.bam 115292505756 BAM harmonized CPTAC3 10d59b04-f3be-4df0-a5ad-217de279d020 a660000bc457204229c14a21c26c9aa5 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor"} -C3L-00918.WXS.N C3L-00918 UCEC WXS blood_normal CPT0065320002 CPT0065320002.WholeExome.RP-1303.bam 30378403177 BAM aligned CPTAC3 06bba088-33da-4c30-a61f-36044f8c44df f4cf038415b9841a644c61f122e24c1d {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00918.WXS.N.hg38 C3L-00918 UCEC WXS blood_normal CPT0065320002 58bc0d8e-4cae-4a40-bc4a-2025637ff81d_gdc_realn.bam 41113568078 BAM harmonized CPTAC3 b667c012-ee1a-4ddc-aee2-81635b8e37f4 8bf6aab77d8f935cbde489f43971d9ab {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00918.WXS.T C3L-00918 UCEC WXS tumor CPT0063790006 CPT0063790006.WholeExome.RP-1303.bam 41546438695 BAM aligned CPTAC3 789f0264-328e-4abc-bafe-07e555bb67e5 6b9fdfe42bd2e442d02f29a2285b1327 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor"} -C3L-00918.WXS.T.hg38 C3L-00918 UCEC WXS tumor CPT0063790006 2d192478-8285-48eb-855b-40b8ce2a42a0_gdc_realn.bam 57688324627 BAM harmonized CPTAC3 dbc8d39f-66cc-4ec1-8988-d6997c19f80d 03db8746cee8f48f92979dd9794ece0f {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor"} -C3L-00921.ADD_30401fcd.miRNA-Seq.S2_L001_R1.T C3L-00921 UCEC miRNA-Seq tumor CPT0064150010 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L001_R1_001.unaln.bam 238853710 BAM S2_L001_R1 unaligned CPTAC3 f50bdf16-aa07-47d8-93dd-a13c78da85a5 5d142354e3bd4ca127fedc3141aa1ac9 {"aliquot_tag": "ADD_30401fcd", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00921.ADD_30401fcd.miRNA-Seq.T.hg38 C3L-00921 UCEC miRNA-Seq tumor CPT0064150010 b15faee2-7b32-4b28-9e58-b2feedd33cdf_mirnaseq_gdc_realn.bam 265239591 BAM harmonized CPTAC3 2b2cc310-0297-418b-b584-63db336bfcd6 a691105049edc1a8dde9e7da3de1ea35 {"aliquot_tag": "ADD_30401fcd", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3L-00921.MethArray.Green.T C3L-00921 UCEC Methylation_Array tumor CPT0064150007 202184990057_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1ef8c0c1-a75d-4a93-a5cb-e2fe55858fbd 27b4956ae0ece26a38447f50018deb6f {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor"} -C3L-00921.MethArray.Red.T C3L-00921 UCEC Methylation_Array tumor CPT0064150007 202184990057_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 ec5b4e0e-9dcf-4431-82bc-ac86de5e6929 77738d0f37ad2827171c4862fa5f0a98 {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.chimeric.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.chimeric.gdc_realn.bam 63624121 BAM chimeric harmonized CPTAC3 05e91977-049d-455b-8c2d-4ffb3f83af8b 33516c0c4a14245db8238e010518c9f3 {"aliquot_tag": "ALQ_372ddbd4", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.chimeric.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.chimeric.gdc_realn.bam 143318674 BAM chimeric harmonized CPTAC3 595c6e54-a5c2-4934-93f4-ec912de3348d 4de7f4d889df7069afcece6d7b9a85f3 {"aliquot_tag": "ALQ_d10cc9ba", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.genomic.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.genomic.gdc_realn.bam 8017495229 BAM genomic harmonized CPTAC3 d3a11e83-7421-4b6f-97fc-5fd979326040 66f064f64bf01d676153fe88abbb0082 {"aliquot_tag": "ALQ_372ddbd4", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.genomic.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.genomic.gdc_realn.bam 7397003899 BAM genomic harmonized CPTAC3 249c366f-fd14-4068-b350-e7350e238f19 c34a06ace33f9e73ae52bbb3a34d6194 {"aliquot_tag": "ALQ_d10cc9ba", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.S47_R1.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R1_001.fastq.gz 4407530940 FASTQ S47_R1 unaligned CPTAC3 8a82365e-f5b9-4c4b-a9e1-901c71b6e37e c361dcf7ba6f61da6e6463345021a88c {"aliquot_tag": "ALQ_d10cc9ba", "sample": "S47", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.S47_R2.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R2_001.fastq.gz 4493903995 FASTQ S47_R2 unaligned CPTAC3 b44e884b-0b39-4fdc-bbad-5ff5c3b2a386 ace8ece2fa59d36a83229fda2a21c4a4 {"aliquot_tag": "ALQ_d10cc9ba", "sample": "S47", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.S7_L003_R1.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R1_001.fastq.gz 3584191981 FASTQ S7_L003_R1 unaligned CPTAC3 c8ac958e-2e20-4379-9568-7cc508e311de cd93965ee5b94e1f26b660f265784c4a {"aliquot_tag": "ALQ_372ddbd4", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.S7_L003_R2.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R2_001.fastq.gz 3766771238 FASTQ S7_L003_R2 unaligned CPTAC3 e292b646-ce77-45a1-a535-cb0dd26898e8 237962fbcb5e9e07fd8b865bfe4379e9 {"aliquot_tag": "ALQ_372ddbd4", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.transcriptome.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.transcriptome.gdc_realn.bam 6083886466 BAM transcriptome harmonized CPTAC3 4d19d87a-c449-462f-90aa-c5c5de468de7 313524262219902b6935c23a260e22dc {"aliquot_tag": "ALQ_372ddbd4", "gdc_sample_type": "Primary Tumor"} -C3L-00921.RNA-Seq.transcriptome.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.transcriptome.gdc_realn.bam 3108352788 BAM transcriptome harmonized CPTAC3 59c97a9a-ff51-45aa-b0b6-61c80b4ff46d 71f37f9f8ee038ca729a2069219ae6da {"aliquot_tag": "ALQ_d10cc9ba", "gdc_sample_type": "Primary Tumor"} -C3L-00921.WGS.N C3L-00921 UCEC WGS blood_normal CPT0065390002 CPT0065390002.WholeGenome.RP-1303.bam 74478942121 BAM aligned CPTAC3 04f2f715-5b80-41ac-ba2e-9c59a18b1a73 002f6b742ec792990b0dc6d96fd37743 {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00921.WGS.N.hg38 C3L-00921 UCEC WGS blood_normal CPT0065390002 5af0168b-bb1a-4771-a478-cb4f8ec8fde8_gdc_realn.bam 116281837995 BAM harmonized CPTAC3 4d726701-04ed-4a0a-bcab-495568a316e5 b865bf1bac6d0899f2292b787b4800c8 {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00921.WGS.T C3L-00921 UCEC WGS tumor CPT0064150007 CPT0064150007.WholeGenome.RP-1303.bam 66982886372 BAM aligned CPTAC3 046967f9-2fa5-4bc0-b032-9dec4caf1cad 95084754cecbe5ac36c052415c7b0bb0 {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor"} -C3L-00921.WGS.T.hg38 C3L-00921 UCEC WGS tumor CPT0064150007 b9d8510c-3b0e-49fb-98a3-c7db2cd05da7_gdc_realn.bam 101518905800 BAM harmonized CPTAC3 fa13139a-3e2c-49cd-9318-1d7dc55f2f19 5beb2b8dd8b81ee5abb419d26ee772ca {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor"} -C3L-00921.WXS.N C3L-00921 UCEC WXS blood_normal CPT0065390002 CPT0065390002.WholeExome.RP-1303.bam 21022096387 BAM aligned CPTAC3 c8287e6d-4867-410b-98f2-30f66d47beea d62e19ccdaf64e4f5e874279b29b4eee {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00921.WXS.N.hg38 C3L-00921 UCEC WXS blood_normal CPT0065390002 5af0168b-bb1a-4771-a478-cb4f8ec8fde8_gdc_realn.bam 28356223871 BAM harmonized CPTAC3 2bb81d8c-9d4e-441e-ad35-b5c5474a8559 a8f78a9da29320bc4980ee6d363295dd {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00921.WXS.T C3L-00921 UCEC WXS tumor CPT0064150007 CPT0064150007.WholeExome.RP-1303.bam 26912544724 BAM aligned CPTAC3 2e22b0b0-8496-4694-b710-1cd7c98b5c66 32d45712c769d93e4529707aefe8dd32 {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor"} -C3L-00921.WXS.T.hg38 C3L-00921 UCEC WXS tumor CPT0064150007 b9d8510c-3b0e-49fb-98a3-c7db2cd05da7_gdc_realn.bam 36702146113 BAM harmonized CPTAC3 08f80502-5363-432c-93ae-25f87330cf9e bc0794425a7cabe08efafd531631964a {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor"} -C3L-00923.MethArray.Green.A C3L-00923 LSCC Methylation_Array tissue_normal CPT0063440006 203219760074_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 332d2f00-9e4c-4d4f-92ab-71d70d57017c 8fe8356401e7522974dc6f54de7bedef {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.MethArray.Green.T C3L-00923 LSCC Methylation_Array tumor CPT0063430009 202184990059_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b109556c-a144-4b9e-824d-7599e0a6b39b 834a1a156184a06a20822fa0710f581f {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor"} -C3L-00923.MethArray.Red.A C3L-00923 LSCC Methylation_Array tissue_normal CPT0063440006 203219760074_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 c7ff11f7-1ffd-46c5-8d68-0d0f9f3f1ba6 1ec638e860163b8a628520257e52b9d6 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.MethArray.Red.T C3L-00923 LSCC Methylation_Array tumor CPT0063430009 202184990059_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b6ac61c-e187-4f22-89fa-6828191e5ced af10b011784888eb01efa58e64b517c8 {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor"} -C3L-00923.miRNA-Seq.A.hg38 C3L-00923 LSCC miRNA-Seq tissue_normal CPT0063440009 e0c4c91e-2ec8-44a1-8656-9da7b994ff18_mirnaseq_gdc_realn.bam 291382609 BAM harmonized CPTAC3 70fbdc95-bb4e-490d-bfa1-27bd52f26e02 af65b893dbad506b74188cd84d4c4a46 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.miRNA-Seq.S14_L003_R1.T C3L-00923 LSCC miRNA-Seq tumor CPT0063430006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTAGAG_S14_L003_R1_001.unaln.bam 205878063 BAM S14_L003_R1 unaligned CPTAC3 85a5f639-90bc-4bfe-9311-0c9d12f41c34 be160f5a6b9067a9737ab3f5805721e6 {"aliquot_tag": "ALQ_da12d124", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00923.miRNA-Seq.S37_L006_R1.A C3L-00923 LSCC miRNA-Seq tissue_normal CPT0063440009 181113_UNC31-K00269_0164_AH23NNBBXY_AGTCAA_S37_L006_R1_001.unaln.bam 261455917 BAM S37_L006_R1 unaligned CPTAC3 81c240af-3dab-4c85-9ef2-82b0c40db1e4 07a8f11ca358d22bd5ce47e2706bb145 {"aliquot_tag": "ALQ_f88d10a5", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.miRNA-Seq.T.hg38 C3L-00923 LSCC miRNA-Seq tumor CPT0063430006 8b92affc-6c61-42fd-84ef-13b076d67b90_mirnaseq_gdc_realn.bam 230685844 BAM harmonized CPTAC3 4d5a7ed5-66d8-48fb-95f8-596d85ef10a3 43f272fa0171451254a1b6548cf26cc4 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor"} -C3L-00923.RNA-Seq.chimeric.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.chimeric.gdc_realn.bam 33315321 BAM chimeric harmonized CPTAC3 8fd531d1-6066-49a1-8d4a-54f8ef731e4a a36503387037b9c40b1f54debeed46e1 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.RNA-Seq.chimeric.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.chimeric.gdc_realn.bam 26768539 BAM chimeric harmonized CPTAC3 deb7e3eb-e397-4f71-83c9-b0024aa123b7 2359d5c2ae5b46b466b9f9009b3ae2e3 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor"} -C3L-00923.RNA-Seq.genomic.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.genomic.gdc_realn.bam 9185614731 BAM genomic harmonized CPTAC3 8a30910a-d091-48f5-9e62-bba53e345ae6 f3866ae276b113ad4e609a2b269a7a87 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.RNA-Seq.genomic.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.genomic.gdc_realn.bam 7323439249 BAM genomic harmonized CPTAC3 f43bd82c-94bf-42a7-95f7-1dbf10139938 9781f9aab4a97503fac761e0f692b122 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor"} -C3L-00923.RNA-Seq.S15_L004_R1.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3964127226 FASTQ S15_L004_R1 unaligned CPTAC3 80bee658-8280-48cb-9ace-c7a990192093 caf1af1c39d580c4175c8e410272cc32 {"aliquot_tag": "ALQ_f88d10a5", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.RNA-Seq.S15_L004_R2.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4270849254 FASTQ S15_L004_R2 unaligned CPTAC3 8ebfb07d-48ff-4371-a25a-d32d0acda130 5a5a7351f8be4dbd849d1488c6359c68 {"aliquot_tag": "ALQ_f88d10a5", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.RNA-Seq.S1_L001_R1.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R1_001.fastq.gz 3401781752 FASTQ S1_L001_R1 unaligned CPTAC3 c5e03418-2572-4583-995b-9f5d154a3c5b bdce6159c7d1321f76cd53ddbc2dece8 {"aliquot_tag": "ALQ_da12d124", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00923.RNA-Seq.S1_L001_R2.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R2_001.fastq.gz 3664390440 FASTQ S1_L001_R2 unaligned CPTAC3 160068e2-67b7-400f-9626-5cc7f21ac002 12811d7295a344183a4332ce3d0d0e8f {"aliquot_tag": "ALQ_da12d124", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00923.RNA-Seq.transcriptome.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.transcriptome.gdc_realn.bam 10742569675 BAM transcriptome harmonized CPTAC3 810bfaec-273c-4b1d-9ca1-3ef6470fafd2 1f473ee433e7028498b83179beebaa69 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.RNA-Seq.transcriptome.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.transcriptome.gdc_realn.bam 9008398539 BAM transcriptome harmonized CPTAC3 bbaea97c-0ce1-4e9f-9e19-0d6ed35e1410 83f8fe5a9c3b172df89af541683d4b43 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor"} -C3L-00923.WGS.A C3L-00923 LSCC WGS tissue_normal CPT0063440006 CPT0063440006.WholeGenome.RP-1303.bam 63456923319 BAM aligned CPTAC3 2746a3e8-ca4b-48b0-8fd2-34e1fe7e306d 2e4046edfc4eaf229767854457aba989 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.WGS.A.hg38 C3L-00923 LSCC WGS tissue_normal CPT0063440006 152edad9-88f9-4902-b4b5-259a03f52797_wgs_gdc_realn.bam 94028001435 BAM harmonized CPTAC3 52213dc3-dfbc-460a-95be-341b26d47b64 79b56fdec45cc74b11f95410662f52a3 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.WGS.N C3L-00923 LSCC WGS blood_normal CPT0065260002 CPT0065260002.WholeGenome.RP-1303.bam 60712966354 BAM aligned CPTAC3 6bd776b2-b69e-44a2-9f5e-4a60b22a8967 af58b54c55227dad3cdc1ead758b7138 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00923.WGS.N.hg38 C3L-00923 LSCC WGS blood_normal CPT0065260002 d3a17aae-7ccc-4e62-b6f9-7a7f0bfb20eb_gdc_realn.bam 92854181272 BAM harmonized CPTAC3 b4357651-c5f4-4003-a4e5-a7833f5b82eb d8e21c77eb171e53033948de2e9e9151 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00923.WGS.T C3L-00923 LSCC WGS tumor CPT0063430009 CPT0063430009.WholeGenome.RP-1303.bam 70514493202 BAM aligned CPTAC3 07c690fb-0cce-4785-adee-af98df8caaed 657e801bc2c50ed9ab2761238c91a856 {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor"} -C3L-00923.WGS.T.hg38 C3L-00923 LSCC WGS tumor CPT0063430009 4fe1aac3-4bf0-4ceb-a371-c129d5fac28d_gdc_realn.bam 105578059870 BAM harmonized CPTAC3 19b0cf04-990a-4dd4-ab3d-2ee864f209db 31784a056b91d994f322accfc1d00bd7 {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor"} -C3L-00923.WXS.A C3L-00923 LSCC WXS tissue_normal CPT0063440006 CPT0063440006.WholeExome.RP-1303.bam 32470650022 BAM aligned CPTAC3 c4932b2e-d4e7-4f29-98fd-5607e6558de6 19da042da315a4e9a39dc1f6fa7a6ec1 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.WXS.A.hg38 C3L-00923 LSCC WXS tissue_normal CPT0063440006 152edad9-88f9-4902-b4b5-259a03f52797_wxs_gdc_realn.bam 43482022374 BAM harmonized CPTAC3 07a69b64-a3fe-4e58-b7fc-8fa6276b2c36 90a534d984f18e22fa96bf35c6f9f8d2 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00923.WXS.N C3L-00923 LSCC WXS blood_normal CPT0065260002 CPT0065260002.WholeExome.RP-1303.bam 29924878688 BAM aligned CPTAC3 58e7cf1b-498c-404d-aaba-e70e290c7025 1993ec200cf00791b16f61676bc6fcb5 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00923.WXS.N.hg38 C3L-00923 LSCC WXS blood_normal CPT0065260002 d3a17aae-7ccc-4e62-b6f9-7a7f0bfb20eb_gdc_realn.bam 40082091718 BAM harmonized CPTAC3 4a059854-cff6-4dba-a57b-83aed6d94595 b99b8375fa566652c335174c17adf499 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00923.WXS.T C3L-00923 LSCC WXS tumor CPT0063430009 CPT0063430009.WholeExome.RP-1303.bam 37586024746 BAM aligned CPTAC3 72fe54a2-974b-49d6-9a27-1193a8f93632 7b2352b10f5f19325c5afe009e38ca4e {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor"} -C3L-00923.WXS.T.hg38 C3L-00923 LSCC WXS tumor CPT0063430009 4fe1aac3-4bf0-4ceb-a371-c129d5fac28d_gdc_realn.bam 51157216279 BAM harmonized CPTAC3 a3368d17-8c03-4876-96e1-63c5e1154323 2e21285e719e72db758e175a4d72fe3d {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor"} -C3L-00927.MethArray.Green.A C3L-00927 LSCC Methylation_Array tissue_normal CPT0063500006 203219640133_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7a471876-4e26-4b2d-a164-246c8c153f4f b315960a5a74ed9e65c852ff42d35876 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.MethArray.Green.T C3L-00927 LSCC Methylation_Array tumor CPT0063480009 202163550072_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 56184550-b133-4e3f-875e-d89832fef4af cb26a163b2d2eee6129ff056b137769d {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor"} -C3L-00927.MethArray.Red.A C3L-00927 LSCC Methylation_Array tissue_normal CPT0063500006 203219640133_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 9ee2e934-65e1-46ad-bd5d-264e1c1f8f11 039f17486d5a1413135774b41288b39e {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.MethArray.Red.T C3L-00927 LSCC Methylation_Array tumor CPT0063480009 202163550072_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 44cec8f0-c620-4cb7-beb5-ffd96173d4c4 d091e658efe1771b3e14e654b12999b4 {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor"} -C3L-00927.miRNA-Seq.A.hg38 C3L-00927 LSCC miRNA-Seq tissue_normal CPT0063500009 99566db1-261b-4899-b59b-ca9b8ab8ae04_mirnaseq_gdc_realn.bam 253085620 BAM harmonized CPTAC3 57cab561-1806-40c8-801c-6a67d30fcd31 a25cf7d2f5562fe9ba63f3ed8cc2ed4e {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.miRNA-Seq.S13_L003_R1.T C3L-00927 LSCC miRNA-Seq tumor CPT0063480006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTCCGC_S13_L003_R1_001.unaln.bam 212061135 BAM S13_L003_R1 unaligned CPTAC3 a8c94c61-da8b-40c1-8a14-9566724ce8d8 6e02913d3b2f53ca113c3e9bc32a19d1 {"aliquot_tag": "ALQ_adc2e035", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00927.miRNA-Seq.S39_L006_R1.A C3L-00927 LSCC miRNA-Seq tissue_normal CPT0063500009 181113_UNC31-K00269_0164_AH23NNBBXY_ATGTCA_S39_L006_R1_001.unaln.bam 223769765 BAM S39_L006_R1 unaligned CPTAC3 9ae9b91f-8da4-431c-b2bb-21c8ea065ae8 1f819645f2c4fd76e11e4134d6c97d89 {"aliquot_tag": "ALQ_c65165c0", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.miRNA-Seq.T.hg38 C3L-00927 LSCC miRNA-Seq tumor CPT0063480006 1b177121-ace3-409b-9a8f-2867ebb86c20_mirnaseq_gdc_realn.bam 233035781 BAM harmonized CPTAC3 99053ce8-73ed-48b6-bed3-13caa144b12d e4e1b74b449de3edfbc5d3a240a311ec {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor"} -C3L-00927.RNA-Seq.chimeric.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.chimeric.gdc_realn.bam 39049047 BAM chimeric harmonized CPTAC3 339e48ac-e51b-4a2c-a91d-5aa6d09befe5 a410ba42bd08c7582530503414d08057 {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.RNA-Seq.chimeric.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.chimeric.gdc_realn.bam 30853424 BAM chimeric harmonized CPTAC3 59ab7776-2eea-4759-bac7-e8c38bdc9658 6b14aed3ca34eaa8300f54e92a4009df {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor"} -C3L-00927.RNA-Seq.genomic.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.genomic.gdc_realn.bam 8952118275 BAM genomic harmonized CPTAC3 44954497-1630-4392-b613-579d65f0fa1b 0969c4d20abcf80f581a9d70fb603441 {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.RNA-Seq.genomic.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.genomic.gdc_realn.bam 7871752266 BAM genomic harmonized CPTAC3 1f6cb7cb-c0b0-40cb-bd7d-fcac050a27b0 11a22f2b6df04c0aa1bfc19a3b852748 {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor"} -C3L-00927.RNA-Seq.S13_L004_R1.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4086185678 FASTQ S13_L004_R1 unaligned CPTAC3 d59edba7-cf24-4806-a08e-2b737b0860d6 5b0b0fd4c2be303ec11a7b8a1f5ced1b {"aliquot_tag": "ALQ_c65165c0", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.RNA-Seq.S13_L004_R2.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4470037308 FASTQ S13_L004_R2 unaligned CPTAC3 114a806a-0150-4c9f-a94d-e1176503c96a 96d99c9c21e4ff76d1d9a29a48fce88c {"aliquot_tag": "ALQ_c65165c0", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.RNA-Seq.S4_L001_R1.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3710780116 FASTQ S4_L001_R1 unaligned CPTAC3 45c4199e-9f5e-4059-a802-a1c6e62655e0 f7f2465b974e14f97bb3626628783812 {"aliquot_tag": "ALQ_adc2e035", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00927.RNA-Seq.S4_L001_R2.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3999654743 FASTQ S4_L001_R2 unaligned CPTAC3 aed7d802-d0a4-4422-a402-c0ea057d51bc 789857a3956d305a6cee021ae0a10eb4 {"aliquot_tag": "ALQ_adc2e035", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00927.RNA-Seq.transcriptome.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.transcriptome.gdc_realn.bam 11223351816 BAM transcriptome harmonized CPTAC3 39235af9-f191-4760-aeba-b8783fdb3581 875f64dc28b8342125bb400b4b6c4a39 {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.RNA-Seq.transcriptome.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.transcriptome.gdc_realn.bam 11412343519 BAM transcriptome harmonized CPTAC3 c905ac3e-fd59-439e-bbee-96a6190f6868 ef0ad316790468be61317cebce0cdad8 {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor"} -C3L-00927.WGS.A C3L-00927 LSCC WGS tissue_normal CPT0063500006 CPT0063500006.WholeGenome.RP-1303.bam 70608489871 BAM aligned CPTAC3 04e5bcd9-6e98-4ca4-9917-f1eb712e5595 0a7b88a7f3b9c3154843e1738c7fbeb0 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.WGS.A.hg38 C3L-00927 LSCC WGS tissue_normal CPT0063500006 5b5b4d6b-ebe0-4b3b-ad1e-4b99c11dfa76_wgs_gdc_realn.bam 102599646323 BAM harmonized CPTAC3 83134601-004d-441e-8b34-d4522d8bcdd4 43c4b268e57a1198bea85aaddbc209bb {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.WGS.N C3L-00927 LSCC WGS blood_normal CPT0065270002 CPT0065270002.WholeGenome.RP-1303.bam 89837184712 BAM aligned CPTAC3 44ffa5b8-67c4-4ec1-9558-725f5f0bf808 c1b2f011e508dc093f901d1d8fa5698e {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal"} -C3L-00927.WGS.N.hg38 C3L-00927 LSCC WGS blood_normal CPT0065270002 b41c0aec-0ac2-4394-843c-def04c66212e_gdc_realn.bam 139557671252 BAM harmonized CPTAC3 5f20d768-3910-41ba-916c-9dae17838d8a 9188cf9819398da868b865ecb517ff6d {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal"} -C3L-00927.WGS.T C3L-00927 LSCC WGS tumor CPT0063480009 CPT0063480009.WholeGenome.RP-1303.bam 73789438687 BAM aligned CPTAC3 3cb31f39-3919-4896-a587-2168747abfab bd03bb8e8852a54569d522d91b07b7cb {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor"} -C3L-00927.WGS.T.hg38 C3L-00927 LSCC WGS tumor CPT0063480009 57bdf35e-fa6d-4379-b4bc-1baa1e07fec3_gdc_realn.bam 110977423149 BAM harmonized CPTAC3 f270ceaa-bb11-460c-83ac-7085f601fc48 6479d3ff57603c80ff045483a7196fc1 {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor"} -C3L-00927.WXS.A C3L-00927 LSCC WXS tissue_normal CPT0063500006 CPT0063500006.WholeExome.RP-1303.bam 24225516433 BAM aligned CPTAC3 293f6d94-479c-4c90-945a-a9b8e3a7ef33 6db367ebb034f07bf2568dfd9665e4a9 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.WXS.A.hg38 C3L-00927 LSCC WXS tissue_normal CPT0063500006 5b5b4d6b-ebe0-4b3b-ad1e-4b99c11dfa76_wxs_gdc_realn.bam 32157948112 BAM harmonized CPTAC3 2513958e-cacf-43bb-8952-153456239ee5 3da466e94409eeef3a849109d929e041 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00927.WXS.N C3L-00927 LSCC WXS blood_normal CPT0065270002 CPT0065270002.WholeExome.RP-1303.bam 37562201584 BAM aligned CPTAC3 a055f400-f271-4190-b936-5e4114ede20c 295ac2bae23bd1b09f69ef16d81c74b4 {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal"} -C3L-00927.WXS.N.hg38 C3L-00927 LSCC WXS blood_normal CPT0065270002 b41c0aec-0ac2-4394-843c-def04c66212e_gdc_realn.bam 52274879999 BAM harmonized CPTAC3 ca299aae-7e7f-4ea7-a08f-9025151ccbd4 917e25a7e74d5ca5030e2d75a8646491 {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal"} -C3L-00927.WXS.T C3L-00927 LSCC WXS tumor CPT0063480009 CPT0063480009.WholeExome.RP-1303.bam 21545119640 BAM aligned CPTAC3 c08e4df5-08f4-4b92-9e1d-3e6f240890a4 d0cb365ad41c5fe9f67491c4d01da84c {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor"} -C3L-00927.WXS.T.hg38 C3L-00927 LSCC WXS tumor CPT0063480009 57bdf35e-fa6d-4379-b4bc-1baa1e07fec3_gdc_realn.bam 30246060444 BAM harmonized CPTAC3 b93fc4ee-6d67-44f3-a9ff-ecd30aa1eb76 3b5edfec5995ee98a08e94eff3402c14 {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor"} -C3L-00928.MethArray.Green.A C3L-00928 PDA Methylation_Array tissue_normal CPT0063580006 203561620050_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2de87158-0799-4fe4-9e5e-15634812ea4d 46409bc332d2bef42e425a7b61fd2cba {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00928.MethArray.Green.T C3L-00928 PDA Methylation_Array tumor CPT0063570009 202176300001_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ba3ab4e3-4347-4cc6-a941-0c59805b0185 8bd5148b36aacde10fbb84d501df9d5d {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor"} -C3L-00928.MethArray.Red.A C3L-00928 PDA Methylation_Array tissue_normal CPT0063580006 203561620050_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 30cc2e49-d431-43fb-8671-013def0fd51a 78c3d6ef8b4ba154122d9dca6cb0a0c3 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00928.MethArray.Red.T C3L-00928 PDA Methylation_Array tumor CPT0063570009 202176300001_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 24bb6c8b-f717-4a66-8388-5d6f6fd9fa08 e2667816950ffb95323b34a54daf61eb {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor"} -C3L-00928.miRNA-Seq.S12_L003_R1.T C3L-00928 PDA miRNA-Seq tumor CPT0063570006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGAAA_S12_L003_R1_001.unaln.bam 326389033 BAM S12_L003_R1 unaligned CPTAC3 3713d65b-aa72-4e81-bc17-dcba312e3b9a 1374d0c4bdeebc3d2a7e9b2c33627b52 {"aliquot_tag": "ALQ_e4cea441", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00928.miRNA-Seq.T.hg38 C3L-00928 PDA miRNA-Seq tumor CPT0063570006 edc64397-dd53-46a9-a3db-b0fc2853e9df_mirnaseq_gdc_realn.bam 362867737 BAM harmonized CPTAC3 cf12de48-ec42-4d2c-8329-301b9c760e06 d09f39223714648abe2070dacb994928 {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor"} -C3L-00928.RNA-Seq.chimeric.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.chimeric.gdc_realn.bam 53456513 BAM chimeric harmonized CPTAC3 feefeb71-0102-4985-8154-f4a7d5ae3889 7257b26e8202af3b78c5906d2aa0cf41 {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor"} -C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.genomic.gdc_realn.bam 6476440452 BAM genomic harmonized CPTAC3 e5ecefe4-349b-41e0-a282-fbdb146b2d41 7fa7117870fb628705ff798e943f8b5d {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor"} -C3L-00928.RNA-Seq.S5_L008_R1.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R1_001.fastq.gz 3117828591 FASTQ S5_L008_R1 unaligned CPTAC3 b8776601-597c-4419-ab0e-c770b20442a4 7d0ddde0d011d7963de6a1ac5c370e42 {"aliquot_tag": "ALQ_e4cea441", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00928.RNA-Seq.S5_L008_R2.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R2_001.fastq.gz 3383277976 FASTQ S5_L008_R2 unaligned CPTAC3 34286639-b4c7-4600-9fe2-49fe02c4fd10 e219d6410d48ff238d7bad7a92731fea {"aliquot_tag": "ALQ_e4cea441", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00928.RNA-Seq.transcriptome.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.transcriptome.gdc_realn.bam 8552602745 BAM transcriptome harmonized CPTAC3 44e17d16-a8b0-4c9b-bc3b-8884d8dbee84 c9a0c63606c61b09b7a9c2828c95e862 {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor"} -C3L-00928.Targeted.T C3L-00928 PDA Targeted_Sequencing tumor CPT0063570009_1 CPT0063570009_1.CustomSelection.RP-1303.PDO-18786.bam 4040420667 BAM aligned CPTAC3 04602530-f401-4c21-aa13-79f3b667507c 2c688204e4118def99033ca03d4f31dd {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor"} -C3L-00928.Targeted.T.hg38 C3L-00928 PDA Targeted_Sequencing tumor CPT0063570009_1 bd1adbbd-9936-40c2-8a9e-83f1b1078106_targetedsequencing_gdc_realn.bam 5536450301 BAM harmonized CPTAC3 9f61c2ae-c71b-4e10-bda8-7b77e29ab4d9 6b6639ae3e86292f685671efe4d4c165 {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor"} -C3L-00928.WGS.A C3L-00928 PDA WGS tissue_normal CPT0063580006 CPT0063580006.WholeGenome.RP-1303.bam 63678850370 BAM aligned CPTAC3 5d117eb3-4e6a-4f9e-b484-ebdc182ff994 79b77a8f19fa8e1ef33876508e2de615 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00928.WGS.A.hg38 C3L-00928 PDA WGS tissue_normal CPT0063580006 3bddfbe5-3fe9-4c16-9d0d-441b180f9f2e_wgs_gdc_realn.bam 93160451048 BAM harmonized CPTAC3 43b1561d-30ba-4d8f-ad12-d06a7ae196ea 63ede544e0f9ca4bab1d1c23e7266f50 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00928.WGS.N C3L-00928 PDA WGS blood_normal CPT0065280002 CPT0065280002.WholeGenome.RP-1303.bam 80327205919 BAM aligned CPTAC3 6038c351-aaca-490b-a60b-27e85b1e8f3a 83c4fb6b3d0bb8ee1023f27dee186e6f {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00928.WGS.N.hg38 C3L-00928 PDA WGS blood_normal CPT0065280002 4d28d79b-7cbb-4ad9-af4c-13e4de70ebeb_gdc_realn.bam 120097649872 BAM harmonized CPTAC3 e2ead13a-53f6-48a4-beae-6eb532cddbff e5490dbd2e7d35075db2fdf64bec2984 {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00928.WGS.T C3L-00928 PDA WGS tumor CPT0063570009 CPT0063570009.WholeGenome.RP-1303.bam 72981546055 BAM aligned CPTAC3 5f9521f6-b68d-49e7-a0e8-c10e183f7a78 22d2f7484cfedf77884a9bea86b09000 {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor"} -C3L-00928.WGS.T.hg38 C3L-00928 PDA WGS tumor CPT0063570009 0b9a91bc-a425-4324-94f9-a5b3bb4078a6_gdc_realn.bam 107491950009 BAM harmonized CPTAC3 e793f13c-835b-46f7-8d5c-87f4f7759c53 23700338f4c171b3c5529d6f6d0e8286 {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor"} -C3L-00928.WXS.A C3L-00928 PDA WXS tissue_normal CPT0063580006 CPT0063580006.WholeExome.RP-1303.bam 34657522317 BAM aligned CPTAC3 95743e57-32e4-4577-b319-6c4cc4fc8a3a 21ce46fe94bcd96350016cae67ae1fb4 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00928.WXS.A.hg38 C3L-00928 PDA WXS tissue_normal CPT0063580006 3bddfbe5-3fe9-4c16-9d0d-441b180f9f2e_wxs_gdc_realn.bam 45961452219 BAM harmonized CPTAC3 fffc64ec-180f-4b30-bb1a-e4e4d3a37d3e 66d7ac289238f57547f01010542d52bb {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00928.WXS.N C3L-00928 PDA WXS blood_normal CPT0065280002 CPT0065280002.WholeExome.RP-1303.bam 33777986717 BAM aligned CPTAC3 5d36c6ff-97ef-4d43-bebd-61663d23d046 2592ceff4a36528e728f572d735c506d {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00928.WXS.N.hg38 C3L-00928 PDA WXS blood_normal CPT0065280002 4d28d79b-7cbb-4ad9-af4c-13e4de70ebeb_gdc_realn.bam 45789204493 BAM harmonized CPTAC3 459d0ef1-4d17-4aaa-9555-6c45cd62f3ca 3a560e3c9300b572105a32f16f4e3d4c {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00928.WXS.T C3L-00928 PDA WXS tumor CPT0063570009_1 CPT0063570009_1.WholeExome.RP-1303.bam 63574954251 BAM aligned CPTAC3 1440e66f-6321-445d-9412-3f8ac0d35cff fa9de49173ee6b6453faa2ecacf6bde6 {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor"} -C3L-00928.WXS.T C3L-00928 PDA WXS tumor CPT0063570009 CPT0063570009.WholeExome.RP-1303.bam 35078491175 BAM aligned CPTAC3 f4f416a9-64ae-4d0c-b804-3bfa9288780f 6bd1cc6ee38d6e0b4bc2b6659f56706b {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor"} -C3L-00928.WXS.T.hg38 C3L-00928 PDA WXS tumor CPT0063570009 0b9a91bc-a425-4324-94f9-a5b3bb4078a6_gdc_realn.bam 48971675541 BAM harmonized CPTAC3 4b6f2f9b-f555-4a4e-92be-24f26bbe98ee 22377c27070a58f6792e97ca9ac406de {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor"} -C3L-00928.WXS.T.hg38 C3L-00928 PDA WXS tumor CPT0063570009_1 bd1adbbd-9936-40c2-8a9e-83f1b1078106_wxs_gdc_realn.bam 88118093845 BAM harmonized CPTAC3 c4e455fe-3215-4d18-bd8a-16787b11fc04 d8f07fead4f61714dc8ada5064a5fae5 {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor"} -C3L-00932.MethArray.Green.T C3L-00932 UCEC Methylation_Array tumor CPT0027120009 202178770079_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d6b0ac87-a0f4-4a64-9827-b3df7f28959d 3b3f15088d4f4891aab80c1568710f49 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor"} -C3L-00932.MethArray.Red.T C3L-00932 UCEC Methylation_Array tumor CPT0027120009 202178770079_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 2c844208-f405-42f2-b1cd-aca9f9b6009a 0155c001b902490b6cbaaa9276fb2d1b {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor"} -C3L-00932.miRNA-Seq.A.hg38 C3L-00932 UCEC miRNA-Seq tissue_normal CPT0027130006 344ad7cb-ad0d-4942-84b4-bb4722511c8b_mirnaseq_gdc_realn.bam 270019014 BAM harmonized CPTAC3 26444362-5688-4649-9d12-8120a01e8968 4b4d065b2043785db76bd02a98c10aa4 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.miRNA-Seq.S4_L001_R1.T C3L-00932 UCEC miRNA-Seq tumor CPT0027120006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATTCCT_S4_L001_R1_001.unaln.bam 317613650 BAM S4_L001_R1 unaligned CPTAC3 19337004-d8a5-4423-8bd5-102b04bd5f46 ec1c94c6f5ffb8c44356c92eefbf58fa {"aliquot_tag": "ALQ_c7ba43ce", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00932.miRNA-Seq.S9_L006_R1.A C3L-00932 UCEC miRNA-Seq tissue_normal CPT0027130006 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L006_R1_001.unaln.bam 242042636 BAM S9_L006_R1 unaligned CPTAC3 d067ea26-6f5b-4756-9be0-1b648d1b8067 d192559a1eaa876d963ab9095b59ef8d {"aliquot_tag": "ALQ_fada6a7e", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.miRNA-Seq.T.hg38 C3L-00932 UCEC miRNA-Seq tumor CPT0027120006 cbc4e222-8b77-43d9-8991-2ad9365e88a9_mirnaseq_gdc_realn.bam 353491131 BAM harmonized CPTAC3 f67c082b-f590-494e-9b4e-69cdecb64684 440682db7c0d526257559a24dab72ca5 {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.chimeric.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.chimeric.gdc_realn.bam 121751845 BAM chimeric harmonized CPTAC3 80237dd7-1563-4577-8f65-1272e8441be9 cef1521ee5207f8072a1491230d71f07 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.RNA-Seq.chimeric.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.chimeric.gdc_realn.bam 68129413 BAM chimeric harmonized CPTAC3 7e934827-ab90-4444-85c1-3e49c4150fb2 1da24c76f8b054beaddcd837d3802b0e {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.chimeric.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.chimeric.gdc_realn.bam 295720641 BAM chimeric harmonized CPTAC3 3dcea495-8df3-49c2-a2d5-da3638a68b9d f7ec8d209bf46ac5eeb479851fb0a393 {"aliquot_tag": "ALQ_d69e23cd", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.genomic.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.genomic.gdc_realn.bam 8239682827 BAM genomic harmonized CPTAC3 8725e3cd-0431-4c02-8670-d7717104d239 5eab7ba73c654aeb7ac712e9a599a3c9 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.RNA-Seq.genomic.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.genomic.gdc_realn.bam 6678600354 BAM genomic harmonized CPTAC3 f4ffb295-e382-4fe3-ba99-aae10d3130bb 16a23bc257c6a455fb896abc6881963c {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.genomic.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.genomic.gdc_realn.bam 13402278524 BAM genomic harmonized CPTAC3 f1146142-d36e-4752-ac19-acf6ef70bfe2 fd7de9ffc2e1a0e8387702310fe8c8be {"aliquot_tag": "ALQ_d69e23cd", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.S13_L004_R1.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 3180273949 FASTQ S13_L004_R1 unaligned CPTAC3 dd5354a9-7c2a-48a3-8381-96ed8ee9ea08 eb18f81d5c1f76a728419059e4f50067 {"aliquot_tag": "ALQ_c7ba43ce", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.S13_L004_R2.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 3523214854 FASTQ S13_L004_R2 unaligned CPTAC3 14fc8a67-8464-475b-9c69-0ab40757f0d7 7391742e9e5224d3133e6ffb940d1c1d {"aliquot_tag": "ALQ_c7ba43ce", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.S1_L001_R1.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R1_001.fastq.gz 3903358995 FASTQ S1_L001_R1 unaligned CPTAC3 db54b077-a421-4528-9067-5fdc52ee5366 d0abb28786e6e4c58e724c1f62539bdd {"aliquot_tag": "ALQ_fada6a7e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.RNA-Seq.S1_L001_R2.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R2_001.fastq.gz 4432981778 FASTQ S1_L001_R2 unaligned CPTAC3 1d2625d3-cb72-4722-aee4-b522a30139e0 c913df384d4455f3379e6a6146ddb28e {"aliquot_tag": "ALQ_fada6a7e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.RNA-Seq.S74_R1.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R1_001.fastq.gz 8404847400 FASTQ S74_R1 unaligned CPTAC3 34d82b78-5f6f-46cd-aae7-ef8249ddbd81 e880eb8bd8c202aef6035803e3119eae {"aliquot_tag": "ALQ_d69e23cd", "sample": "S74", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.S74_R2.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R2_001.fastq.gz 8495375424 FASTQ S74_R2 unaligned CPTAC3 aae7f0ef-68aa-4bd1-86da-060e264ba3ab d643bc71eb36240b2fdc7a4bf98c3937 {"aliquot_tag": "ALQ_d69e23cd", "sample": "S74", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.transcriptome.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.transcriptome.gdc_realn.bam 9665728375 BAM transcriptome harmonized CPTAC3 a2c7f35a-1010-49ad-9f2c-bf7ec4bc2b9d 9b814e067d86f0f2f2385b2e3c0b2611 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.RNA-Seq.transcriptome.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.transcriptome.gdc_realn.bam 8913668661 BAM transcriptome harmonized CPTAC3 06212c20-4c1f-4032-955c-9ef86960e54e 5b348ed747d48782a4001feba33b9156 {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor"} -C3L-00932.RNA-Seq.transcriptome.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.transcriptome.gdc_realn.bam 7898797823 BAM transcriptome harmonized CPTAC3 25be226f-4468-4dc4-ac4c-428cd91a91cb 8406921bb15497bb23229ffa6cf91c90 {"aliquot_tag": "ALQ_d69e23cd", "gdc_sample_type": "Primary Tumor"} -C3L-00932.WGS.A C3L-00932 UCEC WGS tissue_normal CPT0027130009 CPT0027130009.WholeGenome.RP-1303.bam 56354902148 BAM aligned CPTAC3 03167521-c05a-4895-b1e0-254f06812837 1f5a6d5b7d7f9a3c00cebc4d902b98e3 {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.WGS.A.hg38 C3L-00932 UCEC WGS tissue_normal CPT0027130009 b79e342b-9467-45ba-8e99-d467ddfc6747_wgs_gdc_realn.bam 81594243258 BAM harmonized CPTAC3 c111a067-1178-4466-a0c4-0c3dec761db2 6385fc88d8ed2d7435a43ae960705083 {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.WGS.N C3L-00932 UCEC WGS blood_normal CPT0027180002 CPT0027180002.WholeGenome.RP-1303.bam 62695472060 BAM aligned CPTAC3 2180b05a-5913-4416-8645-6b802ab705f0 679a012766a12849307ef8c14929e6b1 {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00932.WGS.N.hg38 C3L-00932 UCEC WGS blood_normal CPT0027180002 2b46f8aa-89b0-472b-969d-2ddd7b6266a5_gdc_realn.bam 91245920520 BAM harmonized CPTAC3 81b1a4f5-dcab-4985-bdda-f1dfbca21017 6474413338f2ba1e01412bbab3d5a26a {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00932.WGS.T C3L-00932 UCEC WGS tumor CPT0027120009 CPT0027120009.WholeGenome.RP-1303.bam 76435662176 BAM aligned CPTAC3 e3cd4385-ef9b-4cce-acc2-626d01333474 61f6368bde0e1cd184dca6cb36ec7ec6 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor"} -C3L-00932.WGS.T.hg38 C3L-00932 UCEC WGS tumor CPT0027120009 6fea7283-a05f-4452-bcfc-4489af212782_gdc_realn.bam 111642907072 BAM harmonized CPTAC3 c1e1965b-85d8-40d2-a084-afa2886d1da3 9405ad432ebf1d84a3a9312c2304b2d7 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor"} -C3L-00932.WXS.A C3L-00932 UCEC WXS tissue_normal CPT0027130009 CPT0027130009.WholeExome.RP-1303.bam 30486399167 BAM aligned CPTAC3 f8ec6690-b460-47e8-b70f-fd66538978c3 b7aa8a78041d67c93e9aff7fc32eeab4 {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.WXS.A.hg38 C3L-00932 UCEC WXS tissue_normal CPT0027130009 b79e342b-9467-45ba-8e99-d467ddfc6747_wxs_gdc_realn.bam 41274794428 BAM harmonized CPTAC3 69163639-0ded-4218-a19b-3f03308f5c97 625d0e7a62600e2e5f4c7e3d68b89f7d {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00932.WXS.N C3L-00932 UCEC WXS blood_normal CPT0027180002 CPT0027180002.WholeExome.RP-1303.bam 28606181245 BAM aligned CPTAC3 22a61fbf-a8af-4360-8ddd-2146432a5ac5 417bf0f397e392b0c458b631a73680c7 {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00932.WXS.N.hg38 C3L-00932 UCEC WXS blood_normal CPT0027180002 2b46f8aa-89b0-472b-969d-2ddd7b6266a5_gdc_realn.bam 38893377530 BAM harmonized CPTAC3 727b0893-cc84-4b7e-b139-ea00f0a60d42 29c5f88374140222b72f878b0d1a584b {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal"} -C3L-00932.WXS.T C3L-00932 UCEC WXS tumor CPT0027120009 CPT0027120009.WholeExome.RP-1303.bam 25374416872 BAM aligned CPTAC3 3fb1df82-1f6e-4e56-84c2-3b56d905ac84 537a43a88c7f844fefe4a441e913ab84 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor"} -C3L-00932.WXS.T.hg38 C3L-00932 UCEC WXS tumor CPT0027120009 6fea7283-a05f-4452-bcfc-4489af212782_gdc_realn.bam 34576735449 BAM harmonized CPTAC3 9dbeb6c5-ec18-4cda-b9a0-170ac1f547ac b249abf99c47051f686eface034a1c8e {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor"} -C3L-00938.MethArray.Green.T C3L-00938 UCEC Methylation_Array tumor CPT0016260006 202184990066_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1adc7222-b0b2-4258-9cb6-1229f5ff685b df63391128f3dc2256046d466b3b13d1 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor"} -C3L-00938.MethArray.Red.T C3L-00938 UCEC Methylation_Array tumor CPT0016260006 202184990066_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 4efbbc9b-59b1-433b-9744-a7f055a71d53 0f731b46fe07d2b422d868bd830d2403 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor"} -C3L-00938.miRNA-Seq.S32_L002_R1.T C3L-00938 UCEC miRNA-Seq tumor CPT0016260009 180924_UNC31-K00269_0154_AHWTMLBBXX_CTCAGA_S32_L002_R1_001.unaln.bam 307830642 BAM S32_L002_R1 unaligned CPTAC3 ef1cfd7c-3e08-4cb3-8321-2927e3f0741e edf3db4a4042bb76abf044e7c5de9c7d {"aliquot_tag": "ALQ_ce98666", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00938.miRNA-Seq.T.hg38 C3L-00938 UCEC miRNA-Seq tumor CPT0016260009 dffd83fd-efde-4b43-9544-eb226f1c4186_mirnaseq_gdc_realn.bam 347228868 BAM harmonized CPTAC3 c0964842-3204-4180-9eed-223c597697f3 b500ca8c307d1f10509c25831b5bd5cd {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.chimeric.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.chimeric.gdc_realn.bam 54848196 BAM chimeric harmonized CPTAC3 ebf23fd0-5fd1-4a04-8af0-f777e1ca09b1 f541b5035b93b7d24eaac2905d8a38ec {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.chimeric.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.chimeric.gdc_realn.bam 207605213 BAM chimeric harmonized CPTAC3 5671c417-c941-41a4-8160-8f9397da3407 9b7531e9868b73bdd758c4721f5fb603 {"aliquot_tag": "ALQ_bd02b035", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.genomic.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.genomic.gdc_realn.bam 7384677369 BAM genomic harmonized CPTAC3 4d42a9f7-c633-445a-922a-97dcca5f118d 2067df00570a1502fdf17b9b7d4e7f19 {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.genomic.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.genomic.gdc_realn.bam 9777313866 BAM genomic harmonized CPTAC3 942c2caa-277e-4d46-890d-1d4ee07ed79e 669e6a001eee062271ff0c734cf1d3fa {"aliquot_tag": "ALQ_bd02b035", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.S2_R1.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R1_001.fastq.gz 6623175677 FASTQ S2_R1 unaligned CPTAC3 5dd1c5e5-3c23-4f23-af78-4352f0117659 7869b1643a8dfc599e8f56dbc7e46ef4 {"aliquot_tag": "ALQ_bd02b035", "sample": "S2", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.S2_R2.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R2_001.fastq.gz 6889280939 FASTQ S2_R2 unaligned CPTAC3 fa6757e1-5383-4cf1-997e-22520a884d18 311b4350733824c87ecf391290b85183 {"aliquot_tag": "ALQ_bd02b035", "sample": "S2", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.S3_L001_R1.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R1_001.fastq.gz 3539868300 FASTQ S3_L001_R1 unaligned CPTAC3 893adafa-41f8-4469-9c19-4b3c91b82e20 a948e6ab716698a9f4663533687c1ad7 {"aliquot_tag": "ALQ_ce98666", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.S3_L001_R2.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R2_001.fastq.gz 3696913766 FASTQ S3_L001_R2 unaligned CPTAC3 aafe7ff3-0502-4175-a4a9-887ae8c2ec5b 839cb9653b389fe1ffac5b9bbb0d27eb {"aliquot_tag": "ALQ_ce98666", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.transcriptome.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.transcriptome.gdc_realn.bam 10828986762 BAM transcriptome harmonized CPTAC3 afe2b31c-280f-4eb1-9a25-cd618ff5c0b0 43d518f9f8b6fb8afdf5cbfcfa2939b0 {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor"} -C3L-00938.RNA-Seq.transcriptome.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.transcriptome.gdc_realn.bam 5155121958 BAM transcriptome harmonized CPTAC3 666360c0-b2e5-4bc7-8a01-60a54cd7c6e7 bc864c3b0a5728f18354943d35ec7b39 {"aliquot_tag": "ALQ_bd02b035", "gdc_sample_type": "Primary Tumor"} -C3L-00938.WGS.N C3L-00938 UCEC WGS blood_normal CPT0016330002 CPT0016330002.WholeGenome.RP-1303.bam 72234854172 BAM aligned CPTAC3 bbedd5fa-dc3f-4e76-91bc-01924c74d8e9 e4e1a4028572549a10ddb1c9ae1e9b9a {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00938.WGS.N.hg38 C3L-00938 UCEC WGS blood_normal CPT0016330002 354aacf4-4f9f-4177-8882-d3f996822ad9_gdc_realn.bam 105008388487 BAM harmonized CPTAC3 382e74bf-0a8c-439e-95c7-88d8d22024fc 038db377db1f2f1a497942e48aabdd21 {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00938.WGS.T C3L-00938 UCEC WGS tumor CPT0016260006 CPT0016260006.WholeGenome.RP-1303.bam 61957211213 BAM aligned CPTAC3 3f25525d-4230-4c07-8d73-73907f1d3dec d8ad87fb0178341dc62671f83a012402 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor"} -C3L-00938.WGS.T.hg38 C3L-00938 UCEC WGS tumor CPT0016260006 56a3cbdb-5dad-4d22-af0f-f56075c412b9_gdc_realn.bam 88926367833 BAM harmonized CPTAC3 e4e1ff6a-e89a-4351-969b-1d7c583f21f4 a2485a51f3cbe1cf2caba64a2b978fbb {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor"} -C3L-00938.WXS.N C3L-00938 UCEC WXS blood_normal CPT0016330002 CPT0016330002.WholeExome.RP-1303.bam 30362035027 BAM aligned CPTAC3 f39b8a04-7400-4564-a764-0ea82dc9495b 63cebe806e385838a5a48a70c0e9bab8 {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00938.WXS.N.hg38 C3L-00938 UCEC WXS blood_normal CPT0016330002 354aacf4-4f9f-4177-8882-d3f996822ad9_gdc_realn.bam 41929157127 BAM harmonized CPTAC3 98c830a5-8735-4f5f-812d-3e7f7c3aa514 c14deaf5525b552a2f54c151a10674c1 {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00938.WXS.T C3L-00938 UCEC WXS tumor CPT0016260006 CPT0016260006.WholeExome.RP-1303.bam 23793668698 BAM aligned CPTAC3 332a85b8-bd0a-4610-9bc3-c19e9e7c7924 98defd9f5f62160351511e172742d1c4 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor"} -C3L-00938.WXS.T.hg38 C3L-00938 UCEC WXS tumor CPT0016260006 56a3cbdb-5dad-4d22-af0f-f56075c412b9_gdc_realn.bam 32374048491 BAM harmonized CPTAC3 94e9963b-ecb8-490c-854c-2043f19224f1 b5a9c289bed5434d2646d8f2194dea9b {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor"} -C3L-00942.MethArray.Green.T C3L-00942 UCEC Methylation_Array tumor CPT0016830006 202163550076_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6e416876-40b5-4313-83ab-c565de5dbf81 33c6bbd4535f6e4a0e6228026ed8f865 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.MethArray.Red.T C3L-00942 UCEC Methylation_Array tumor CPT0016830006 202163550076_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 1c434e2b-2dc1-495c-a882-b6669effd8e0 f3158e4ef6df75d5229e9621f3126d36 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.miRNA-Seq.S31_L002_R1.T C3L-00942 UCEC miRNA-Seq tumor CPT0016830009 180924_UNC31-K00269_0154_AHWTMLBBXX_GACGAC_S31_L002_R1_001.unaln.bam 206696570 BAM S31_L002_R1 unaligned CPTAC3 d4a5b4f8-3430-4899-b34d-44f0871a1b3e 9c7894a5ee3bd31b83f470e616f764a8 {"aliquot_tag": "ALQ_65922a70", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.miRNA-Seq.T.hg38 C3L-00942 UCEC miRNA-Seq tumor CPT0016830009 c92c29f2-7d8f-4e69-93f0-9b70035e1852_mirnaseq_gdc_realn.bam 230553897 BAM harmonized CPTAC3 642099d3-d13e-40a4-8f83-fb7fefa2f8fa 5f01a976eae785d908292405a72a2328 {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.chimeric.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.chimeric.gdc_realn.bam 59797038 BAM chimeric harmonized CPTAC3 4c06fc88-57f0-4704-b27c-3c8a3863a46d c727a146985af3eeb43815a979b59d7d {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.chimeric.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.chimeric.gdc_realn.bam 247514354 BAM chimeric harmonized CPTAC3 0b581312-6e69-4eed-80a4-ab576baa5191 e60fc701eea6f35d49dea831df408f4c {"aliquot_tag": "ALQ_9ec90482", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.genomic.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.genomic.gdc_realn.bam 6378649257 BAM genomic harmonized CPTAC3 c6d643ec-26da-41e8-a5e4-672cb791ed9f 0d4b2b5cd4219e1f96b4adf7d5eaaf50 {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.genomic.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.genomic.gdc_realn.bam 9832406211 BAM genomic harmonized CPTAC3 8f11b9d5-71f5-47b4-87fe-1baf46ddefad 3799f86cfba8ccdef3320a8d141a3f40 {"aliquot_tag": "ALQ_9ec90482", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.S14_L008_R1.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R1_001.fastq.gz 2896353667 FASTQ S14_L008_R1 unaligned CPTAC3 34b5b547-c104-4c3b-b809-8c5fc7bf841d 1ad17193bed47fd521691cdd5039d879 {"aliquot_tag": "ALQ_65922a70", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.S14_L008_R2.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R2_001.fastq.gz 3169457788 FASTQ S14_L008_R2 unaligned CPTAC3 54fe3f69-db4c-4bb1-bfe6-957aab9aaf4b e3ad151853b6a56504b10b014ee3bbe4 {"aliquot_tag": "ALQ_65922a70", "sample": "S14", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.S90_R1.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R1_001.fastq.gz 5974470498 FASTQ S90_R1 unaligned CPTAC3 c60ad6c9-1351-437e-943a-a9cd15498bb0 d6c4c360a49a1aa1354d5da8312ad7a4 {"aliquot_tag": "ALQ_9ec90482", "sample": "S90", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.S90_R2.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R2_001.fastq.gz 6247733754 FASTQ S90_R2 unaligned CPTAC3 ce02755a-7232-4c6f-a022-9db0389308c5 7c9005ed067e8f64d18789fa005b801a {"aliquot_tag": "ALQ_9ec90482", "sample": "S90", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.transcriptome.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.transcriptome.gdc_realn.bam 7517137242 BAM transcriptome harmonized CPTAC3 52f06d64-9236-4b15-8644-6479d2deeb15 a6692ac855c5012c06515edc0397b3dd {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor"} -C3L-00942.RNA-Seq.transcriptome.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.transcriptome.gdc_realn.bam 4125085670 BAM transcriptome harmonized CPTAC3 e37f60b9-63f1-4a6d-9752-f0876f6dc322 5c2ecd5519aa189a160947cb5be2a0c9 {"aliquot_tag": "ALQ_9ec90482", "gdc_sample_type": "Primary Tumor"} -C3L-00942.WGS.N C3L-00942 UCEC WGS blood_normal CPT0016970001 CPT0016970001.WholeGenome.RP-1303.bam 94045928911 BAM aligned CPTAC3 699cb50e-8973-4018-b27f-e5ce28faf4c4 671945127ca0494db87ac9a84274d88a {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal"} -C3L-00942.WGS.N.hg38 C3L-00942 UCEC WGS blood_normal CPT0016970001 3bf4671c-36c5-4987-a7f4-7afefe6422cf_gdc_realn.bam 138875632087 BAM harmonized CPTAC3 e1b5b9a4-609d-4bb6-a61e-c0c9e499f9ef 88564a3c2759e1788fb02a580df25cb3 {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal"} -C3L-00942.WGS.T C3L-00942 UCEC WGS tumor CPT0016830006 CPT0016830006.WholeGenome.RP-1303.bam 76115022922 BAM aligned CPTAC3 6c9a46b8-8e19-48dc-baa2-4822c8d913a4 2ee0e72b196a2fe05c30898071969460 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.WGS.T.hg38 C3L-00942 UCEC WGS tumor CPT0016830006 c87a0a06-a7c7-46b7-acf9-42ee5469ff63_gdc_realn.bam 113548936344 BAM harmonized CPTAC3 b3f61b74-c4f8-4a05-883f-9e04a3b70cdb bad5d0e6cf2f4efc7e6ac332be26a9e5 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.WXS.N C3L-00942 UCEC WXS blood_normal CPT0016970001 CPT0016970001.WholeExome.RP-1303.bam 37461678280 BAM aligned CPTAC3 60bb0611-e14f-4042-b148-492cff530e9c 7f18746d40baf123b3c4fe012da9c22a {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal"} -C3L-00942.WXS.N.hg38 C3L-00942 UCEC WXS blood_normal CPT0016970001 3bf4671c-36c5-4987-a7f4-7afefe6422cf_gdc_realn.bam 51267355549 BAM harmonized CPTAC3 06ebf4f1-4419-4dc0-a0c5-cf71457d6008 69ad24bf7f4f2384d9dda3396323d20e {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal"} -C3L-00942.WXS.T C3L-00942 UCEC WXS tumor CPT0016830006 CPT0016830006.WholeExome.RP-1303.bam 33122950311 BAM aligned CPTAC3 e4a34a68-cdb6-40b9-ac1b-a1328f72b67d 7763a3df8a07728bd25dbf776a854041 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor"} -C3L-00942.WXS.T.hg38 C3L-00942 UCEC WXS tumor CPT0016830006 c87a0a06-a7c7-46b7-acf9-42ee5469ff63_gdc_realn.bam 44986333832 BAM harmonized CPTAC3 408ac551-237e-4ba3-8fe9-f9dc6c007ad6 e247926ebb6f502138c1fd038146637b {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor"} -C3L-00943.MethArray.Green.T C3L-00943 UCEC Methylation_Array tumor CPT0086090009 202234380058_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cee0a78f-fed7-4263-8758-90cd5b0ae19e 17e2c35d60c2285142ce2fb22c2011ce {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor"} -C3L-00943.MethArray.Red.T C3L-00943 UCEC Methylation_Array tumor CPT0086090009 202234380058_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 5627ddc3-7600-4858-a215-dbcb4b1bccdb 690a1326d272150b7c0ae8aa1f36023e {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor"} -C3L-00943.miRNA-Seq.S32_L008_R1.T C3L-00943 UCEC miRNA-Seq tumor CPT0086090006 180724_UNC32-K00270_0106_BHWK3MBBXX_GATCAG_S32_L008_R1_001.unaln.bam 255536402 BAM S32_L008_R1 unaligned CPTAC3 3c917f5b-8192-4e22-97d3-1ae1cd15285f 2d49a8d111dcb0d70d8fb01752e6b26a {"aliquot_tag": "ALQ_4c81b606", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00943.miRNA-Seq.T.hg38 C3L-00943 UCEC miRNA-Seq tumor CPT0086090006 07fdaf0d-a052-477e-ad56-a585a813b0c9_mirnaseq_gdc_realn.bam 276430120 BAM harmonized CPTAC3 8b3fe42a-3875-4754-b748-c84ed8d3c4db 2dcf6ccbb04c35baf02e816b2eed0309 {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.chimeric.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.chimeric.gdc_realn.bam 327480248 BAM chimeric harmonized CPTAC3 d3088620-dc05-4a60-a55f-baec5770e4f0 a6ffc6370dce0f3a6f47fdf897f86b8f {"aliquot_tag": "ALQ_6dd59dc4", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.chimeric.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.chimeric.gdc_realn.bam 70305438 BAM chimeric harmonized CPTAC3 c721f5f5-cd6b-4d48-8be9-4d1e50eae3d9 df6ac955f904a79c477c80326002d106 {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.genomic.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.genomic.gdc_realn.bam 11251318137 BAM genomic harmonized CPTAC3 5e9e74e3-9d5c-4d02-8bbe-be948424c2cf 577b468e7a5c0636b2813f9466674700 {"aliquot_tag": "ALQ_6dd59dc4", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.genomic.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.genomic.gdc_realn.bam 7145458617 BAM genomic harmonized CPTAC3 b2d8644b-9bf6-43a3-8285-e274b405f3f7 8bd11af06d6d4820142d41c1c57507ae {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.S80_R1.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R1_001.fastq.gz 7371117167 FASTQ S80_R1 unaligned CPTAC3 12c5191b-bf12-4fa8-9e15-497e520d35dd b0b230b12c9a6d5f3c3737f91a596341 {"aliquot_tag": "ALQ_6dd59dc4", "sample": "S80", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.S80_R2.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R2_001.fastq.gz 7602330886 FASTQ S80_R2 unaligned CPTAC3 00c92a65-49da-4f88-b983-6262fcb6f5cf a691e643e85cddfe82cf54adb0ad8d8d {"aliquot_tag": "ALQ_6dd59dc4", "sample": "S80", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.S9_L003_R1.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3588825985 FASTQ S9_L003_R1 unaligned CPTAC3 4e6d387e-8645-431c-b5ff-74e4a39bed90 d947dcc47a7d44183ec92821415e8123 {"aliquot_tag": "ALQ_4c81b606", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.S9_L003_R2.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R2_001.fastq.gz 3982335018 FASTQ S9_L003_R2 unaligned CPTAC3 61c01c7a-0467-4ea4-ab1f-6f572386b121 3524ee9720bb38bdcac9020fec5816bf {"aliquot_tag": "ALQ_4c81b606", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.transcriptome.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.transcriptome.gdc_realn.bam 4781371295 BAM transcriptome harmonized CPTAC3 334fbce9-812f-4e83-8fd0-d5c0840bcc66 c8141661700e47cad6fed5ae3fc15f72 {"aliquot_tag": "ALQ_6dd59dc4", "gdc_sample_type": "Primary Tumor"} -C3L-00943.RNA-Seq.transcriptome.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.transcriptome.gdc_realn.bam 9567662221 BAM transcriptome harmonized CPTAC3 169779ad-bb4e-406e-8ed0-a02fed44ca1a b673816d80602bdedd951dc1402e9ef3 {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor"} -C3L-00943.WGS.N C3L-00943 UCEC WGS blood_normal CPT0086140002 CPT0086140002.WholeGenome.RP-1303.bam 62746150540 BAM aligned CPTAC3 97384739-e8d4-40a9-a50f-33874596b8a3 47e47f94b292a067d2167c8615ddc2fc {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00943.WGS.N.hg38 C3L-00943 UCEC WGS blood_normal CPT0086140002 9a358cdb-35b4-4339-8210-04b5286ab070_wgs_gdc_realn.bam 92031799752 BAM harmonized CPTAC3 af343e31-2784-4d31-bc05-9d3b53d1f04e f717ef7c28413fad94af630edec6a9f2 {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00943.WGS.T C3L-00943 UCEC WGS tumor CPT0086090009 CPT0086090009.WholeGenome.RP-1303.bam 55812238224 BAM aligned CPTAC3 07a4aa7f-17c6-4e24-a832-43f97963fd35 616a31583d860e5e9af5a2f247d35f85 {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor"} -C3L-00943.WGS.T.hg38 C3L-00943 UCEC WGS tumor CPT0086090009 9068e310-b7ee-4c10-b678-ec27dcfb9e0f_wgs_gdc_realn.bam 82387690448 BAM harmonized CPTAC3 ba586765-c91c-491d-a0b6-9b3271bf5c41 5cb93f725e107544e6983873949d28ee {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor"} -C3L-00943.WXS.N C3L-00943 UCEC WXS blood_normal CPT0086140002 CPT0086140002.WholeExome.RP-1303.bam 30729116910 BAM aligned CPTAC3 69d84040-5a3b-4377-b2be-f6552e2f27e7 ed3c6cafeba1a5cbb479f223f8f38cae {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00943.WXS.N.hg38 C3L-00943 UCEC WXS blood_normal CPT0086140002 9a358cdb-35b4-4339-8210-04b5286ab070_wxs_gdc_realn.bam 42962161491 BAM harmonized CPTAC3 7dd28d1b-b86f-42e4-80fd-2ecd678081fb f05a3f40a76c0cd30e4e1f0ffb26288a {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00943.WXS.T C3L-00943 UCEC WXS tumor CPT0086090009 CPT0086090009.WholeExome.RP-1303.bam 26927974673 BAM aligned CPTAC3 a51d0fdf-24ed-4ffb-b875-5a75356702e1 68b8bbdeb4cc53beab54564e66b9d4eb {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor"} -C3L-00943.WXS.T.hg38 C3L-00943 UCEC WXS tumor CPT0086090009 9068e310-b7ee-4c10-b678-ec27dcfb9e0f_wxs_gdc_realn.bam 36393192181 BAM harmonized CPTAC3 79de16ab-3818-4678-8657-2ccb7ac746a5 74c8d543d9ed835c5d2c62aae2d24477 {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor"} -C3L-00946.MethArray.Green.T C3L-00946 UCEC Methylation_Array tumor CPT0027520009 202163550072_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a2fc4547-bca7-46f6-bf4c-803dec265c61 394f1e1386aadde29ba6eddcef41da72 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor"} -C3L-00946.MethArray.Red.T C3L-00946 UCEC Methylation_Array tumor CPT0027520009 202163550072_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 50afbc9a-5eaf-426f-9500-c8d07dc07f7b b4b68090ce200510b6e60d535d148256 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor"} -C3L-00946.miRNA-Seq.S15_L001_R1.T C3L-00946 UCEC miRNA-Seq tumor CPT0027520006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCGTCC_S15_L001_R1_001.unaln.bam 209047356 BAM S15_L001_R1 unaligned CPTAC3 7cd5384f-0fd0-4407-a9f7-2cdbdfdca618 33b90713d991e24f3ad38e7e616dc537 {"aliquot_tag": "ALQ_5c2b01d8", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00946.miRNA-Seq.T.hg38 C3L-00946 UCEC miRNA-Seq tumor CPT0027520006 0540fe96-6ec6-45a9-a48c-6675ca9f47a6_mirnaseq_gdc_realn.bam 233739284 BAM harmonized CPTAC3 31e8c244-42b6-4ceb-b328-683034cf8d8b e24539950342a52c1e40952e136fa66e {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.chimeric.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.chimeric.gdc_realn.bam 135103244 BAM chimeric harmonized CPTAC3 939cd22e-4d5b-4dab-a1b1-78aae8f7cb1f 0bf5878120207867d44c2c1a634ba02e {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.chimeric.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.chimeric.gdc_realn.bam 283930672 BAM chimeric harmonized CPTAC3 39b99730-da5e-4432-8089-bd8d4f656890 7f236a2f57b6ccb809d3004d66bce08c {"aliquot_tag": "ALQ_4d0f61db", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.genomic.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.genomic.gdc_realn.bam 11524076004 BAM genomic harmonized CPTAC3 cca4f58c-0f22-4a5b-9abb-6cc752be7630 a16cfd4d09eedd559abff78f67387a2a {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.genomic.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.genomic.gdc_realn.bam 11664465795 BAM genomic harmonized CPTAC3 17b47546-cb1e-4c0a-b695-578e947f7816 86f4eb86d027855941b6d273da2396f9 {"aliquot_tag": "ALQ_4d0f61db", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.S2_L001_R1.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R1_001.fastq.gz 5950419367 FASTQ S2_L001_R1 unaligned CPTAC3 dd5912cb-695c-487b-9267-291f8ebb54bb 1fcff343eead4d530f98ef15b90def44 {"aliquot_tag": "ALQ_5c2b01d8", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.S2_L001_R2.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R2_001.fastq.gz 5558684265 FASTQ S2_L001_R2 unaligned CPTAC3 39a421b8-2826-44af-8ee6-af72e9a27cfa c96c6726f5d433105231d268e6354252 {"aliquot_tag": "ALQ_5c2b01d8", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.S89_R1.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R1_001.fastq.gz 6505326446 FASTQ S89_R1 unaligned CPTAC3 ac52d771-37f1-4899-9e00-0a6248c37e33 c2053969ea9fd6dbddc07d805fff56ea {"aliquot_tag": "ALQ_4d0f61db", "sample": "S89", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.S89_R2.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R2_001.fastq.gz 6663983224 FASTQ S89_R2 unaligned CPTAC3 21b6d4b8-a3e8-47e3-8970-0eec3c5f3c9b f47cc602429af43bf8870aa28490c0f6 {"aliquot_tag": "ALQ_4d0f61db", "sample": "S89", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.transcriptome.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.transcriptome.gdc_realn.bam 14962275384 BAM transcriptome harmonized CPTAC3 20fd7b28-1286-41c8-a07a-1b884cae5f24 d8c8ca1f3fe591e0da371d5016885466 {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor"} -C3L-00946.RNA-Seq.transcriptome.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.transcriptome.gdc_realn.bam 4921456850 BAM transcriptome harmonized CPTAC3 baba9c67-4a3a-47d5-849e-b839006756e3 d22f70473b7354c49a9ccbc9bca4bcb1 {"aliquot_tag": "ALQ_4d0f61db", "gdc_sample_type": "Primary Tumor"} -C3L-00946.WGS.N C3L-00946 UCEC WGS blood_normal CPT0027580002 CPT0027580002.WholeGenome.RP-1303.bam 62247276419 BAM aligned CPTAC3 b4dc461c-f9ee-4508-8954-382337fa1a8f 5faf1bb33ea21fcb9a9c7d4f0cca93ea {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00946.WGS.N.hg38 C3L-00946 UCEC WGS blood_normal CPT0027580002 e1096e9c-9941-455a-861b-af3afbfaf88d_gdc_realn.bam 90120362745 BAM harmonized CPTAC3 8b361ca4-6848-4ba3-9c16-5c2cf1872ff4 3736cb1ffe412e727aef25d4b76f04ce {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00946.WGS.T C3L-00946 UCEC WGS tumor CPT0027520009 CPT0027520009.WholeGenome.RP-1303.bam 57202953682 BAM aligned CPTAC3 4d5b4aee-3c6b-4dae-967e-72ca14c3a78c eaac5ce633ba3d7862b174ae91515c06 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor"} -C3L-00946.WGS.T.hg38 C3L-00946 UCEC WGS tumor CPT0027520009 49c45165-41d4-4682-b984-8dee018efa9a_gdc_realn.bam 82264304404 BAM harmonized CPTAC3 ba76dbf1-372a-4b71-aaac-d4c267ebbaa3 72fbc0a9978d687746ab59161f94bb00 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor"} -C3L-00946.WXS.N C3L-00946 UCEC WXS blood_normal CPT0027580002 CPT0027580002.WholeExome.RP-1303.bam 27050601725 BAM aligned CPTAC3 2df9b35b-bbe9-435b-97be-1bb9695d3946 f9795d8af1867e49b5c8a9819c8148ba {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00946.WXS.N.hg38 C3L-00946 UCEC WXS blood_normal CPT0027580002 e1096e9c-9941-455a-861b-af3afbfaf88d_gdc_realn.bam 36954979763 BAM harmonized CPTAC3 ae16fac3-238d-44ad-8b5f-c41ad8f2a58c 885fb09e772e4e3f32c37149f92e2765 {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal"} -C3L-00946.WXS.T C3L-00946 UCEC WXS tumor CPT0027520009 CPT0027520009.WholeExome.RP-1303.bam 21613777190 BAM aligned CPTAC3 e3c6f555-f860-4a9f-a8b1-7f4bc0b2c2a4 6fc31c67671795298e91528f874d5d82 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor"} -C3L-00946.WXS.T.hg38 C3L-00946 UCEC WXS tumor CPT0027520009 49c45165-41d4-4682-b984-8dee018efa9a_gdc_realn.bam 29713192922 BAM harmonized CPTAC3 9f7c16e3-2d73-42a0-9d4b-61270a1169d9 b7631f330fede5f3de583032014e4b4a {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor"} -C3L-00947.MethArray.Green.T C3L-00947 UCEC Methylation_Array tumor CPT0027420009 202184900105_R02C01_Grn.idat 13676228 IDAT Green NA CPTAC3 374f688c-a335-411f-ba57-c155b563db65 0824573f5e705b2915e5cbc67d4e5faa {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor"} -C3L-00947.MethArray.Red.T C3L-00947 UCEC Methylation_Array tumor CPT0027420009 202184900105_R02C01_Red.idat 13676228 IDAT Red NA CPTAC3 8dffd3b4-ba94-43a6-843f-c9ac3a8e8c4d b4fc200e9a0ef7b59090d3a4e3450f3d {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor"} -C3L-00947.miRNA-Seq.S16_L001_R1.T C3L-00947 UCEC miRNA-Seq tumor CPT0027420006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGTCA_S16_L001_R1_001.unaln.bam 172293814 BAM S16_L001_R1 unaligned CPTAC3 aedbde74-6381-44dd-af70-4db06ef78383 f1ca742369d6d9faecf70b042e3816da {"aliquot_tag": "ALQ_9777d27d", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00947.miRNA-Seq.T.hg38 C3L-00947 UCEC miRNA-Seq tumor CPT0027420006 916e0ee6-ebc5-4440-9998-f1a50281dc0e_mirnaseq_gdc_realn.bam 184179227 BAM harmonized CPTAC3 669d0afd-483a-4933-9259-5abb6d5ff387 8712f94ccc7381b720921112de89bf58 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.chimeric.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.chimeric.gdc_realn.bam 82170474 BAM chimeric harmonized CPTAC3 04ae95bc-a285-46b0-b94c-94956caf568d 1c357b02b8526c0f574db5aa160c9a89 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.chimeric.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.chimeric.gdc_realn.bam 259508630 BAM chimeric harmonized CPTAC3 4f2bb531-e3aa-402a-9289-03a9ebcf9ba3 99b8b0fa721521b7749deae98a905a69 {"aliquot_tag": "ALQ_8653b27e", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.genomic.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.genomic.gdc_realn.bam 9257848676 BAM genomic harmonized CPTAC3 73b1e3f2-d5ec-43b4-9648-b33c056bdb38 c97b42fbc31ed71820532b34ed91cf71 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.genomic.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.genomic.gdc_realn.bam 11209530702 BAM genomic harmonized CPTAC3 c35cc2ab-4e32-4383-b8a0-c6058a4d0f2d 44c9a834ec5d4a0d2a7e07fca8ca7f1b {"aliquot_tag": "ALQ_8653b27e", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.S55_R1.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R1_001.fastq.gz 6552628601 FASTQ S55_R1 unaligned CPTAC3 2464f4dd-d975-48f9-9c70-0d01c8325476 a3d52214d4925dc08ca2716f6ddeebe6 {"aliquot_tag": "ALQ_8653b27e", "sample": "S55", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.S55_R2.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R2_001.fastq.gz 6669345606 FASTQ S55_R2 unaligned CPTAC3 19e6b95f-827c-403d-bf30-e22dd7f47708 06570160bf4ca5db527d04df11fceeb9 {"aliquot_tag": "ALQ_8653b27e", "sample": "S55", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.S5_L002_R1.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R1_001.fastq.gz 5110657108 FASTQ S5_L002_R1 unaligned CPTAC3 989082f5-abb2-4d47-a6b3-e3560b9b38d3 53c6cad957e16ec901de39e21bd50995 {"aliquot_tag": "ALQ_9777d27d", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.S5_L002_R2.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R2_001.fastq.gz 5411220746 FASTQ S5_L002_R2 unaligned CPTAC3 8d9b3ee8-b37d-4e67-856c-149dcd51f602 9a91285ca4406c7a3e01b672836d086f {"aliquot_tag": "ALQ_9777d27d", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.transcriptome.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.transcriptome.gdc_realn.bam 12966401715 BAM transcriptome harmonized CPTAC3 01f4bf07-f31f-4b48-86e7-7189950d8ee0 9b5b1f6cf0c441314b6b78cca789def8 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor"} -C3L-00947.RNA-Seq.transcriptome.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.transcriptome.gdc_realn.bam 4667227382 BAM transcriptome harmonized CPTAC3 0f0f845a-3e2f-4240-a4b4-32661325fd31 ff6af52a19fb217fdc616f686fd12b2f {"aliquot_tag": "ALQ_8653b27e", "gdc_sample_type": "Primary Tumor"} -C3L-00947.WGS.N C3L-00947 UCEC WGS blood_normal CPT0027480002 CPT0027480002.WholeGenome.RP-1303.bam 55317293102 BAM aligned CPTAC3 19785a4b-f66f-4abd-8cc2-ab14e8109fc2 8bfd398a91d172f5cf0c7ac09c4fdedc {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00947.WGS.N.hg38 C3L-00947 UCEC WGS blood_normal CPT0027480002 151447ea-0a29-4f5b-b2b5-c844ecd8e530_gdc_realn.bam 81089926362 BAM harmonized CPTAC3 f09df81d-7521-4c7f-ade2-c7c64f7f6146 0c837c6492f13ace6cff1668c62e8d2c {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00947.WGS.T C3L-00947 UCEC WGS tumor CPT0027420009 CPT0027420009.WholeGenome.RP-1303.bam 63014999039 BAM aligned CPTAC3 df70395e-da71-4a02-87ce-e79bb382caa2 2b6f280fb11e3b7ee43da06384b5d2e0 {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor"} -C3L-00947.WGS.T.hg38 C3L-00947 UCEC WGS tumor CPT0027420009 8d88f32c-d396-4335-a5bf-6071ae72e740_gdc_realn.bam 91233144365 BAM harmonized CPTAC3 766f7db5-1abd-45f6-b662-27fd77070be2 0179981c18b5ac06a410084be9a925c6 {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor"} -C3L-00947.WXS.N C3L-00947 UCEC WXS blood_normal CPT0027480002 CPT0027480002.WholeExome.RP-1303.bam 28118387601 BAM aligned CPTAC3 c707d921-31f0-4460-8dcd-f000420b0b8c cf7d309cc16fd212d7e5375c5c9d7848 {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00947.WXS.N.hg38 C3L-00947 UCEC WXS blood_normal CPT0027480002 151447ea-0a29-4f5b-b2b5-c844ecd8e530_gdc_realn.bam 38437084434 BAM harmonized CPTAC3 0a956166-4f53-45a7-afcd-27ff6a956bb4 a6088f6e9a8394dae3a3b73866aecab1 {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00947.WXS.T C3L-00947 UCEC WXS tumor CPT0027420009 CPT0027420009.WholeExome.RP-1303.bam 25529744354 BAM aligned CPTAC3 c20cc1ed-0cee-4d29-b4f7-bd705b2faa78 fd5f4ac10319d886a7c1b5158ea0b52c {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor"} -C3L-00947.WXS.T.hg38 C3L-00947 UCEC WXS tumor CPT0027420009 8d88f32c-d396-4335-a5bf-6071ae72e740_gdc_realn.bam 35533060762 BAM harmonized CPTAC3 d60d7a82-029f-47bc-82b9-0bdd09cbb8f3 24f8adfd41a48f2022bb96bb7c14eaca {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor"} -C3L-00949.MethArray.Green.T C3L-00949 UCEC Methylation_Array tumor CPT0016370006 202178770079_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 609e163b-3b10-4737-97d7-1db655ef5877 db3771d530028121de25e42d49ec611b {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor"} -C3L-00949.MethArray.Red.T C3L-00949 UCEC Methylation_Array tumor CPT0016370006 202178770079_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 336281fc-8187-45df-8768-c09d9901df00 676b3a812fb0e76d5af0934a935b7c06 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor"} -C3L-00949.miRNA-Seq.S30_L002_R1.T C3L-00949 UCEC miRNA-Seq tumor CPT0016370009 180924_UNC31-K00269_0154_AHWTMLBBXX_TAATCG_S30_L002_R1_001.unaln.bam 221452962 BAM S30_L002_R1 unaligned CPTAC3 529c7573-c354-4f1c-9147-141fd25186df eb5882cf07a7579000a512feef51d7f0 {"aliquot_tag": "ALQ_fad57c73", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00949.miRNA-Seq.T.hg38 C3L-00949 UCEC miRNA-Seq tumor CPT0016370009 d5d13eda-ff6a-438a-af78-ac34964bf567_mirnaseq_gdc_realn.bam 244702440 BAM harmonized CPTAC3 2bb636e5-2fce-4e76-b9b1-470455d37f81 500dd257ba1d3533f0c8c12097957b74 {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor"} -C3L-00949.RNA-Seq.chimeric.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.chimeric.gdc_realn.bam 51855651 BAM chimeric harmonized CPTAC3 029d1552-cd3b-4f2a-8e11-3be02d934820 3db3eabb8616e5a12973f106cb5970b3 {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor"} -C3L-00949.RNA-Seq.genomic.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.genomic.gdc_realn.bam 6944574659 BAM genomic harmonized CPTAC3 cd43b890-f398-4ec0-ade6-e517484509eb 03da8998a24e400e10d3ed7d9120846a {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor"} -C3L-00949.RNA-Seq.S5_L008_R1.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R1_001.fastq.gz 3317808630 FASTQ S5_L008_R1 unaligned CPTAC3 acc81064-08f0-457b-9629-1bb742e4ceb6 cec89f2c90023f22c7b5a5578fb1c8f8 {"aliquot_tag": "ALQ_fad57c73", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00949.RNA-Seq.S5_L008_R2.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R2_001.fastq.gz 3611007600 FASTQ S5_L008_R2 unaligned CPTAC3 1e750be5-488d-4a05-9c08-928700638328 2699aec1b8188078122714e85a954337 {"aliquot_tag": "ALQ_fad57c73", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00949.RNA-Seq.transcriptome.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.transcriptome.gdc_realn.bam 8138050527 BAM transcriptome harmonized CPTAC3 64f4d299-38ab-4bea-8f8b-df361e54fbe3 5a7bb78b378bf2c253d99d1ae2265c60 {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor"} -C3L-00949.WGS.N C3L-00949 UCEC WGS blood_normal CPT0016440002 CPT0016440002.WholeGenome.RP-1303.bam 82245907149 BAM aligned CPTAC3 da40b327-c2d2-4b9b-9f0a-643e9705a431 6094f3ad0f6fb4d3d436c91b87260b4d {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal"} -C3L-00949.WGS.N.hg38 C3L-00949 UCEC WGS blood_normal CPT0016440002 ff9ecfd3-1cb1-4fbc-b644-7060d84c4df2_gdc_realn.bam 123260864011 BAM harmonized CPTAC3 bb4ccd90-f05f-48bc-b1bf-31420ea52bff 750639949f023e4a2d73b24ada90c7c1 {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal"} -C3L-00949.WGS.T C3L-00949 UCEC WGS tumor CPT0016370006 CPT0016370006.WholeGenome.RP-1303.bam 83779699681 BAM aligned CPTAC3 bbc437ca-859d-4584-bf1a-afd645df394b 223044a9865feef28fd8450ba1e2a68a {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor"} -C3L-00949.WGS.T.hg38 C3L-00949 UCEC WGS tumor CPT0016370006 b4f80061-4d26-41c1-9931-7423d6eb4b8a_gdc_realn.bam 125849666138 BAM harmonized CPTAC3 f027559a-6562-4a93-a278-256e1a8d6bf7 6da3e80578f0ac7f83f1733ac0078615 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor"} -C3L-00949.WXS.N C3L-00949 UCEC WXS blood_normal CPT0016440002 CPT0016440002.WholeExome.RP-1303.bam 30252831574 BAM aligned CPTAC3 7d65bd6b-fd23-4d09-8555-9dcd266dc171 b426988a2ab0846721ef8f42f94718a5 {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal"} -C3L-00949.WXS.N.hg38 C3L-00949 UCEC WXS blood_normal CPT0016440002 ff9ecfd3-1cb1-4fbc-b644-7060d84c4df2_gdc_realn.bam 41464319368 BAM harmonized CPTAC3 6dd56638-c056-487f-a7fe-f446da41b8e2 f27c83b98b9f8db3b7d2633415bb4ca3 {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal"} -C3L-00949.WXS.T C3L-00949 UCEC WXS tumor CPT0016370006 CPT0016370006.WholeExome.RP-1303.bam 31179165388 BAM aligned CPTAC3 a748c37a-854b-404b-a0cc-57ca932c74c3 110b2220d1f9eb2d37b7a78720b7cc00 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor"} -C3L-00949.WXS.T.hg38 C3L-00949 UCEC WXS tumor CPT0016370006 b4f80061-4d26-41c1-9931-7423d6eb4b8a_gdc_realn.bam 42521749377 BAM harmonized CPTAC3 182fea04-02cf-4d59-a7b5-ea460b167acc 18d07dee617eb71bb2b79c3da76632d9 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor"} -C3L-00961.MethArray.Green.T C3L-00961 UCEC Methylation_Array tumor CPT0027320009 202176290046_R02C01_Grn.idat 13676215 IDAT Green NA CPTAC3 ffd31bae-327f-4ec8-9213-4a6c72ba2496 de7322980d91448694880525cba905d2 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor"} -C3L-00961.MethArray.Red.T C3L-00961 UCEC Methylation_Array tumor CPT0027320009 202176290046_R02C01_Red.idat 13676215 IDAT Red NA CPTAC3 a376ca0b-7c97-48a2-972f-92937def182b d2860bffa5ed916dc74a34083ce5d223 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor"} -C3L-00961.miRNA-Seq.S17_L001_R1.T C3L-00961 UCEC miRNA-Seq tumor CPT0027320006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTTCC_S17_L001_R1_001.unaln.bam 212988736 BAM S17_L001_R1 unaligned CPTAC3 8099e457-9d97-4562-901f-9684a0c2f382 547eebcd321b149879498ce1922f5b8a {"aliquot_tag": "ALQ_8a72e2c5", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00961.miRNA-Seq.T.hg38 C3L-00961 UCEC miRNA-Seq tumor CPT0027320006 fe9075dd-a20e-4b0b-8af4-e964e6d13057_mirnaseq_gdc_realn.bam 235008497 BAM harmonized CPTAC3 eefb9752-6654-44b7-9870-6f955c1515d8 07572d5f05fe5d8bb7a92808ac740c6f {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.chimeric.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.chimeric.gdc_realn.bam 71262395 BAM chimeric harmonized CPTAC3 06be8c4e-f81a-45ad-ad1b-2fffb4bedf5f 5ae922c5588e8fc27832cf1fb8bded2e {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.chimeric.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.chimeric.gdc_realn.bam 179475928 BAM chimeric harmonized CPTAC3 7635e40c-1c63-42ba-998b-f90265dd952f d614407377218ee35e914ea085653cc0 {"aliquot_tag": "ALQ_9b5682c6", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.genomic.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.genomic.gdc_realn.bam 8547994668 BAM genomic harmonized CPTAC3 d4945a21-7218-4289-8e9f-c1ec6890ac71 7f82499df2cdaa638b77a4ce2e54cf46 {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.genomic.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.genomic.gdc_realn.bam 8192626608 BAM genomic harmonized CPTAC3 d22b0369-37e8-45ea-86df-d1db2591f637 ef35a414f02889c984513814efd74203 {"aliquot_tag": "ALQ_9b5682c6", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.S38_R1.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R1_001.fastq.gz 5095479961 FASTQ S38_R1 unaligned CPTAC3 f9cae9a1-a916-4a89-9381-65360e61bbcb e1d12fdb9868dc208bb94cd854871b24 {"aliquot_tag": "ALQ_9b5682c6", "sample": "S38", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.S38_R2.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R2_001.fastq.gz 5294472018 FASTQ S38_R2 unaligned CPTAC3 1c4d29fb-ba85-44b4-bda6-e6873ba2e6a9 6be5584577c27c241e073e2c4c1baed2 {"aliquot_tag": "ALQ_9b5682c6", "sample": "S38", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.S4_L002_R1.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R1_001.fastq.gz 4938190260 FASTQ S4_L002_R1 unaligned CPTAC3 339ad507-4d3e-4c9e-ae1c-5a207645cf9b 4d3b7b6a99a762b8ba3ccb26346f49cf {"aliquot_tag": "ALQ_8a72e2c5", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.S4_L002_R2.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R2_001.fastq.gz 5192890639 FASTQ S4_L002_R2 unaligned CPTAC3 6af2d835-4e67-4d59-9cf9-da8f0d197f44 7b9d93fe7b35fde68b0b14b2e72c7705 {"aliquot_tag": "ALQ_8a72e2c5", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.transcriptome.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.transcriptome.gdc_realn.bam 13186227979 BAM transcriptome harmonized CPTAC3 92083679-d782-4662-bcf6-ef2f368d86aa 9b5819b1bb375c7b133d2db77d353047 {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor"} -C3L-00961.RNA-Seq.transcriptome.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.transcriptome.gdc_realn.bam 3953062528 BAM transcriptome harmonized CPTAC3 94ca974c-9019-4bd0-9a21-757e1f996d9b ac97877a8cf06ee89db5df8e267f5251 {"aliquot_tag": "ALQ_9b5682c6", "gdc_sample_type": "Primary Tumor"} -C3L-00961.WGS.N C3L-00961 UCEC WGS blood_normal CPT0027380002 CPT0027380002.WholeGenome.RP-1303.bam 57575239957 BAM aligned CPTAC3 653769e1-f0d2-4dce-a6a9-50e1cc4e8eb8 32c2d8185dd0f7405711be3d65cc820a {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00961.WGS.N.hg38 C3L-00961 UCEC WGS blood_normal CPT0027380002 2ebebf6f-5324-4914-b811-16b21e534c86_gdc_realn.bam 84725365572 BAM harmonized CPTAC3 7ede6f1d-f31a-4122-b9a4-efec55776a69 9df0331b6048403d2ec6d346daae70fc {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00961.WGS.T C3L-00961 UCEC WGS tumor CPT0027320009 CPT0027320009.WholeGenome.RP-1303.bam 66266176258 BAM aligned CPTAC3 03e4932b-6f46-45ab-a6f2-332ecb7fdfc4 681ab60530c0556a57d31816bb6e64a9 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor"} -C3L-00961.WGS.T.hg38 C3L-00961 UCEC WGS tumor CPT0027320009 56a0a87f-0053-436e-be1c-a0a3c975e19e_gdc_realn.bam 95919916981 BAM harmonized CPTAC3 2c79d829-0805-426f-bde9-d7862506dc75 405b21b4b92150008baa4613e484773a {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor"} -C3L-00961.WXS.N C3L-00961 UCEC WXS blood_normal CPT0027380002 CPT0027380002.WholeExome.RP-1303.bam 20211022629 BAM aligned CPTAC3 5cb5ae6c-4a2d-471f-8f28-11c1622d7d2a 5fde4f714c91640b6dc9825cb2ffcf73 {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00961.WXS.N.hg38 C3L-00961 UCEC WXS blood_normal CPT0027380002 2ebebf6f-5324-4914-b811-16b21e534c86_gdc_realn.bam 27732495438 BAM harmonized CPTAC3 4d3a50d1-30e2-41fa-bea1-18e48bb47d4f 19d715de0602a0ebb5d80e743bc8ef30 {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal"} -C3L-00961.WXS.T C3L-00961 UCEC WXS tumor CPT0027320009 CPT0027320009.WholeExome.RP-1303.bam 25445873092 BAM aligned CPTAC3 f6887135-5cc9-4373-92d0-658826ad5f5e 6bb22560e9ec82b04467bf259db3c52b {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor"} -C3L-00961.WXS.T.hg38 C3L-00961 UCEC WXS tumor CPT0027320009 56a0a87f-0053-436e-be1c-a0a3c975e19e_gdc_realn.bam 34761278162 BAM harmonized CPTAC3 266c147a-cbf1-4b6d-8bb7-2497f2ad9013 13663d7f7ced023c1dcb82a841ab8b63 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor"} -C3L-00962.miRNA-Seq.S38_L002_R1.T C3L-00962 UCEC miRNA-Seq tumor CPT0016680021 190508_UNC31-K00269_0215_BH7FYKBBXY_CTAGCT_S38_L002_R1_001.unaln.bam 386861758 BAM S38_L002_R1 unaligned CPTAC3 1730f0aa-3cb4-43c6-920a-f097760e35c7 b563f4ceb25ce01a68d30eac065747bf {"aliquot_tag": "ALQ_14a590a1", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00962.miRNA-Seq.T.hg38 C3L-00962 UCEC miRNA-Seq tumor CPT0016680021 f5d78104-3d2f-4211-b445-4407c4eb18bd_mirnaseq_gdc_realn.bam 443899159 BAM harmonized CPTAC3 61c78bc2-2199-465f-b1b7-aaa1213defe6 6c15ef2423e2c10049037844cabff57f {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor"} -C3L-00962.RNA-Seq.chimeric.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.chimeric.gdc_realn.bam 37530634 BAM chimeric harmonized CPTAC3 d021d1ea-12e2-4b0a-ba31-e4424d58cf8d 29a7515773ff9d0b2fcd09dbce9cc1c1 {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor"} -C3L-00962.RNA-Seq.genomic.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.genomic.gdc_realn.bam 8033278072 BAM genomic harmonized CPTAC3 1388d22d-2b34-4d1d-a8e6-aba74f9f4b00 0c4b20e607fc1490398dba44ea819959 {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor"} -C3L-00962.RNA-Seq.S24_L006_R1.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R1_001.fastq.gz 3871623999 FASTQ S24_L006_R1 unaligned CPTAC3 8b61732b-9c39-47e9-bdb2-944ac0f2c32d d184dd1b169d6f224d35113760b29a82 {"aliquot_tag": "ALQ_14a590a1", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00962.RNA-Seq.S24_L006_R2.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R2_001.fastq.gz 4329264982 FASTQ S24_L006_R2 unaligned CPTAC3 e7278e12-717f-48e4-a8ea-b52d1f793018 4d5626be2773cda2241f2cf41657e34b {"aliquot_tag": "ALQ_14a590a1", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00962.RNA-Seq.transcriptome.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.transcriptome.gdc_realn.bam 10598535450 BAM transcriptome harmonized CPTAC3 0e578f05-cf30-4a1a-b694-b72196ffa961 2ed785f63c0673ab8bf147404dc01320 {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor"} -C3L-00963.MethArray.Green.T C3L-00963 UCEC Methylation_Array tumor CPT0016490006 202163550007_R02C01_Grn.idat 13676228 IDAT Green NA CPTAC3 eefcb0a2-3e9f-403e-b957-1869dc3205c0 0627ebc13840e3fc60462d43290aea51 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor"} -C3L-00963.MethArray.Red.T C3L-00963 UCEC Methylation_Array tumor CPT0016490006 202163550007_R02C01_Red.idat 13676228 IDAT Red NA CPTAC3 f9fe6baf-fddd-4b17-a545-198c6717e92a 348745e27ff737e41398af0c5ed36594 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor"} -C3L-00963.miRNA-Seq.S29_L002_R1.T C3L-00963 UCEC miRNA-Seq tumor CPT0016490009 180924_UNC31-K00269_0154_AHWTMLBBXX_TACAGC_S29_L002_R1_001.unaln.bam 310633478 BAM S29_L002_R1 unaligned CPTAC3 0646f0bb-c0e5-4311-9d4a-e202a1b037cb c5a0b24c3b989b3eacccd4f2aaeaa223 {"aliquot_tag": "ALQ_58e0f2aa", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00963.miRNA-Seq.T.hg38 C3L-00963 UCEC miRNA-Seq tumor CPT0016490009 88aa1c93-b21b-4c2a-989e-e7f1368ebed7_mirnaseq_gdc_realn.bam 339423165 BAM harmonized CPTAC3 c72873ad-9dbd-4969-911f-b48f1f1ef185 c30e3f1d4ca7ade863255eb9c5a06714 {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.chimeric.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.chimeric.gdc_realn.bam 60165141 BAM chimeric harmonized CPTAC3 24ff4bbc-4124-4607-8927-5fe91f7e996f 9c2e96c1f6ffed0f1853d17edf9f4dba {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.chimeric.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.chimeric.gdc_realn.bam 209802031 BAM chimeric harmonized CPTAC3 f2187924-4aa3-4a59-8fdd-24555170eac8 10c51e6485e59c4ede28a8d266033128 {"aliquot_tag": "ALQ_65f76d8c", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.genomic.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.genomic.gdc_realn.bam 8452431023 BAM genomic harmonized CPTAC3 14d998a3-3299-4006-9509-09df67e2ebd9 fa581f5dec9a482863774fc3e422ed49 {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.genomic.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.genomic.gdc_realn.bam 9869329856 BAM genomic harmonized CPTAC3 3dcc8471-0832-429d-a9d6-3da5557e85f1 d9d915891d82e8d8816c4a5ceccdb580 {"aliquot_tag": "ALQ_65f76d8c", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.S17_R1.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R1_001.fastq.gz 5716287588 FASTQ S17_R1 unaligned CPTAC3 c61ccb46-6090-460c-9c41-b170f803b8f4 fad8cfe1057f4e64f5b9cb54172760df {"aliquot_tag": "ALQ_65f76d8c", "sample": "S17", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.S17_R2.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R2_001.fastq.gz 5940140719 FASTQ S17_R2 unaligned CPTAC3 c805f186-cdd7-4009-99a2-7366db342610 fc429bb3f22b13a7782c62637c6570a9 {"aliquot_tag": "ALQ_65f76d8c", "sample": "S17", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.S2_L007_R1.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R1_001.fastq.gz 3797154043 FASTQ S2_L007_R1 unaligned CPTAC3 1041d695-f7af-49a9-a30c-b81115bd4ea7 3da454cb1e8393c1765a51dd6bc8b68c {"aliquot_tag": "ALQ_58e0f2aa", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.S2_L007_R2.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R2_001.fastq.gz 4039874386 FASTQ S2_L007_R2 unaligned CPTAC3 dfa1ae1e-a25a-483a-8e30-29a16c5d9939 c7236fd8c2c13c39b2312bdf3855b650 {"aliquot_tag": "ALQ_58e0f2aa", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.transcriptome.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.transcriptome.gdc_realn.bam 9363329659 BAM transcriptome harmonized CPTAC3 79cd168b-089b-4aac-aa54-226be23b304c 54b78452e5a1219c7ba4971739f63f97 {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor"} -C3L-00963.RNA-Seq.transcriptome.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.transcriptome.gdc_realn.bam 5524432082 BAM transcriptome harmonized CPTAC3 99bd4a65-0c5b-44ba-adbe-3e83c64cb525 90db3f02873bedd7c404b224d1d9a3af {"aliquot_tag": "ALQ_65f76d8c", "gdc_sample_type": "Primary Tumor"} -C3L-00963.WGS.N C3L-00963 UCEC WGS blood_normal CPT0016580002 CPT0016580002.WholeGenome.RP-1303.bam 60363727193 BAM aligned CPTAC3 fd16df5e-b67d-403c-ae08-940c67f7e5ff 267aab00104a26f562ca4d576d4d7ecf {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal"} -C3L-00963.WGS.N.hg38 C3L-00963 UCEC WGS blood_normal CPT0016580002 6bf834f1-56da-43d9-98d1-6430d3011f86_gdc_realn.bam 88258777385 BAM harmonized CPTAC3 1fc95228-bfef-4385-8139-e212a669da09 ce879ca6271c285b11743d20fad69954 {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal"} -C3L-00963.WGS.T C3L-00963 UCEC WGS tumor CPT0016490006 CPT0016490006.WholeGenome.RP-1303.bam 73735451887 BAM aligned CPTAC3 b69e38c7-928b-4f01-82c8-ec8858b478b8 0b88c93e421d4f48ec93a6c76123b8bb {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor"} -C3L-00963.WGS.T.hg38 C3L-00963 UCEC WGS tumor CPT0016490006 8dd015d6-ae3a-40d5-bc79-798ae6e58d69_gdc_realn.bam 106051183348 BAM harmonized CPTAC3 5df1af76-66e7-4bf2-af84-e795e172fc9b c0048572a26437dfc73a0a3d2c224847 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor"} -C3L-00963.WXS.N C3L-00963 UCEC WXS blood_normal CPT0016580002 CPT0016580002.WholeExome.RP-1303.bam 34058665649 BAM aligned CPTAC3 3b1346b2-15c4-426d-9a84-80205c0cedb4 4342b4a9a7f06d3ea167e8ce98638d09 {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal"} -C3L-00963.WXS.N.hg38 C3L-00963 UCEC WXS blood_normal CPT0016580002 6bf834f1-56da-43d9-98d1-6430d3011f86_gdc_realn.bam 45909974051 BAM harmonized CPTAC3 36a10350-2017-46dc-ae84-9d87036edd79 762fcb700407644d63aa0a9f3c1affbb {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal"} -C3L-00963.WXS.T C3L-00963 UCEC WXS tumor CPT0016490006 CPT0016490006.WholeExome.RP-1303.bam 25100549844 BAM aligned CPTAC3 317010d0-d173-46e5-92db-8b5c77f6e444 5cd2b2b56005d51edd38b6f627251d19 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor"} -C3L-00963.WXS.T.hg38 C3L-00963 UCEC WXS tumor CPT0016490006 8dd015d6-ae3a-40d5-bc79-798ae6e58d69_gdc_realn.bam 33896115966 BAM harmonized CPTAC3 ab63ee96-3de7-40ee-92a4-1ca8a2bca48d 352453cfbc4edb6630bd5554ea3764f8 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor"} -C3L-00965.MethArray.Green.T C3L-00965 LSCC Methylation_Array tumor CPT0101130009 202234380050_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f1453f2d-2bba-4bc0-8b71-6b9412a83ae8 4c76d2a234be68116f01ffb30f54b6ee {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor"} -C3L-00965.MethArray.Red.T C3L-00965 LSCC Methylation_Array tumor CPT0101130009 202234380050_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 5d9cc785-d78b-4c06-be22-e6afc79fde6d 57932c1abf568813bafe0164093886e9 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor"} -C3L-00965.miRNA-Seq.S28_L002_R1.T C3L-00965 LSCC miRNA-Seq tumor CPT0101130006 181113_UNC31-K00269_0164_AH23NNBBXY_TGACCA_S28_L002_R1_001.unaln.bam 205935743 BAM S28_L002_R1 unaligned CPTAC3 da2d8c25-c2d7-4adb-b33a-3f04472a2256 d39a79917a2593429a1e67543a9f3316 {"aliquot_tag": "ALQ_cc544c7a", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00965.miRNA-Seq.T.hg38 C3L-00965 LSCC miRNA-Seq tumor CPT0101130006 bfe72a51-c186-42dc-b528-ba4c78d4797d_mirnaseq_gdc_realn.bam 223610232 BAM harmonized CPTAC3 feb74597-8032-4d6c-b535-dd82c8af5641 eefd46bbc6f9a6ebb68c941e6ea33539 {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor"} -C3L-00965.RNA-Seq.chimeric.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.chimeric.gdc_realn.bam 40063747 BAM chimeric harmonized CPTAC3 becfbf52-c050-4acd-92e2-742f71e4264f 0274c6bbba4abe9fd5946480ef4e53c4 {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor"} -C3L-00965.RNA-Seq.genomic.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.genomic.gdc_realn.bam 8029246621 BAM genomic harmonized CPTAC3 5851f61d-fc25-451e-b54d-9c341bffa7b1 5c0b39e09b6629fffc5e5ab80468a011 {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor"} -C3L-00965.RNA-Seq.S11_L003_R1.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3866276780 FASTQ S11_L003_R1 unaligned CPTAC3 0020d643-33e0-4d2f-bbbe-ac2b1d7be8af f4f7205be9d06502d325754024c3a8b4 {"aliquot_tag": "ALQ_cc544c7a", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00965.RNA-Seq.S11_L003_R2.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 4009720420 FASTQ S11_L003_R2 unaligned CPTAC3 3b6c31b7-7ef7-4306-81ae-f568f7a8bbba 7fed5e595cf2c40340627f3bf452d648 {"aliquot_tag": "ALQ_cc544c7a", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00965.RNA-Seq.transcriptome.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.transcriptome.gdc_realn.bam 10174284530 BAM transcriptome harmonized CPTAC3 b24aa827-35aa-44fe-ba36-284fffbfc6c5 52cfbbc114c39a43b6b19f4d0e97f56d {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor"} -C3L-00965.WGS.N C3L-00965 LSCC WGS blood_normal CPT0100930002 CPT0100930002.WholeGenome.RP-1303.bam 63111872939 BAM aligned CPTAC3 d5bc519c-4660-47c5-b386-e423496cd875 10d61df0fcb2244a3c16b5102bb9f4f0 {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00965.WGS.N.hg38 C3L-00965 LSCC WGS blood_normal CPT0100930002 fb9fa687-6ff7-445d-8f04-b7831151cb3b_wgs_gdc_realn.bam 93380029224 BAM harmonized CPTAC3 178064bc-5caa-486d-a646-d6cb4dcb1eda e5ad8f5512f0f96700ff0f8c591ccfc4 {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00965.WGS.T C3L-00965 LSCC WGS tumor CPT0101130009 CPT0101130009.WholeGenome.RP-1303.bam 60741165959 BAM aligned CPTAC3 2039e496-24d9-498c-a489-3bd8d79f0707 bf2154683ee402545d82234e132f94d9 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor"} -C3L-00965.WGS.T.hg38 C3L-00965 LSCC WGS tumor CPT0101130009 12efcab8-04a7-4ae6-ac66-34cac3484d19_wgs_gdc_realn.bam 88689987555 BAM harmonized CPTAC3 e1cc3450-d82b-43e3-ab48-ea2b88a33932 96e1ee56f87d7f1067cf0156c709ad6d {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor"} -C3L-00965.WXS.N C3L-00965 LSCC WXS blood_normal CPT0100930002 CPT0100930002.WholeExome.RP-1303.bam 33595056807 BAM aligned CPTAC3 ea948740-a8db-4509-a89c-815f08794c24 91d0c6476330fa7b6f8bbd09735c336d {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00965.WXS.N.hg38 C3L-00965 LSCC WXS blood_normal CPT0100930002 fb9fa687-6ff7-445d-8f04-b7831151cb3b_wxs_gdc_realn.bam 45644011184 BAM harmonized CPTAC3 b482fcb7-3eed-4ae7-949f-51438a7a2f53 d19691b41d889fcbb03d03e56aac9a63 {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-00965.WXS.T C3L-00965 LSCC WXS tumor CPT0101130009 CPT0101130009.WholeExome.RP-1303.bam 38420631618 BAM aligned CPTAC3 bb8ecac8-5b08-4ca8-b25e-83468578fda1 682f0fa64592633da02a569d4fe11c03 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor"} -C3L-00965.WXS.T.hg38 C3L-00965 LSCC WXS tumor CPT0101130009 12efcab8-04a7-4ae6-ac66-34cac3484d19_wxs_gdc_realn.bam 52570455626 BAM harmonized CPTAC3 2bf65b88-0fdd-4b8d-a72e-49a5e41e4167 19b9d4c8fed79b9bf3e284af48ee2a71 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor"} -C3L-00966.MethArray.Green.A C3L-00966 CCRCC Methylation_Array tissue_normal CPT0101350006 204373100109_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 30f398a4-d0c7-4d00-b7bd-e18045e25308 dc4a53431a6d8c424835f2fdceb70bb6 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.MethArray.Green.T C3L-00966 CCRCC Methylation_Array tumor CPT0101310009 202234370086_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b41aa881-37ba-44bc-9382-6b2bb9d3782c 766af71521874c8d46e1755955b98459 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor"} -C3L-00966.MethArray.Red.A C3L-00966 CCRCC Methylation_Array tissue_normal CPT0101350006 204373100109_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 4a8d875a-65fc-44a4-b293-45cd69434f39 2935f9c9aa67219eaa3dff25147b2736 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.MethArray.Red.T C3L-00966 CCRCC Methylation_Array tumor CPT0101310009 202234370086_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 576c21e1-8333-429a-8502-9cc55e26466b 72d28ce61d58e508ff3037c03c7c872b {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor"} -C3L-00966.miRNA-Seq.A.hg38 C3L-00966 CCRCC miRNA-Seq tissue_normal CPT0101350009 eeadf540-b8fb-44b6-8396-aed8fbb188b3_mirnaseq_gdc_realn.bam 202213923 BAM harmonized CPTAC3 1d83c6a2-e74d-4c1d-a154-3eac6b0088d5 9b837dee17c71a1c96448c017087a7fd {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.miRNA-Seq.S29_L002_R1.T C3L-00966 CCRCC miRNA-Seq tumor CPT0101310006 181113_UNC31-K00269_0164_AH23NNBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 193289668 BAM S29_L002_R1 unaligned CPTAC3 1bf4951c-cb13-45a1-b1f0-f8c1b368327c 9f36d32285955d166372748b5b0f7251 {"aliquot_tag": "ALQ_fb5cbe11", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00966.miRNA-Seq.S32_L002_R1.A C3L-00966 CCRCC miRNA-Seq tissue_normal CPT0101350009 181119_UNC31-K00269_0165_AH27WCBBXY_ACTTGA_S32_L002_R1_001.unaln.bam 179310237 BAM S32_L002_R1 unaligned CPTAC3 f8baf566-e666-4cb9-a4aa-a6233975fb4d 42d6bd67b97544059619d262f824a55c {"aliquot_tag": "ALQ_9e630540", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.miRNA-Seq.T.hg38 C3L-00966 CCRCC miRNA-Seq tumor CPT0101310006 29114b93-e2f5-4465-a98e-583d4e4b41f3_mirnaseq_gdc_realn.bam 214305707 BAM harmonized CPTAC3 6ce08308-9cf5-478a-9ff5-830befeeef54 a55b45a63091acf232458e5fc4a7f0da {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor"} -C3L-00966.RNA-Seq.chimeric.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.chimeric.gdc_realn.bam 38687143 BAM chimeric harmonized CPTAC3 7851cae6-9328-4c96-914b-d1e36de82ed1 61039463e6ae3c7b7689385f5e893406 {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.RNA-Seq.chimeric.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.chimeric.gdc_realn.bam 47217173 BAM chimeric harmonized CPTAC3 a3dc2e8e-1c60-4bb1-bf81-7286d0361c27 2004ad771420e52966b6db56a34c636c {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor"} -C3L-00966.RNA-Seq.genomic.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.genomic.gdc_realn.bam 9257768115 BAM genomic harmonized CPTAC3 589948a1-4285-473d-bf58-fb7fd8edf228 0f9a1065ca7fd4596edda31c0c0815dd {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.RNA-Seq.genomic.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.genomic.gdc_realn.bam 9161683533 BAM genomic harmonized CPTAC3 931d8e81-db84-4160-99bd-ef5e6f60d9e9 7ac9298c32e21febbaf0ab62c8860aed {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor"} -C3L-00966.RNA-Seq.S10_L003_R1.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4398111732 FASTQ S10_L003_R1 unaligned CPTAC3 59d5dee9-9811-432f-89b6-0ac178febae1 51f483b8268085b0d226855bb70d6062 {"aliquot_tag": "ALQ_fb5cbe11", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00966.RNA-Seq.S10_L003_R2.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4776142266 FASTQ S10_L003_R2 unaligned CPTAC3 0a7e3be2-b23c-41b9-965a-c84966ab661a 2b5ef0232e88aaa30074283c96856123 {"aliquot_tag": "ALQ_fb5cbe11", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00966.RNA-Seq.S7_L002_R1.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R1_001.fastq.gz 4370927479 FASTQ S7_L002_R1 unaligned CPTAC3 3edfa9a1-3ee2-4193-9f85-465eb53d860c 816b76b8742e6afeea0bcb655b6d6804 {"aliquot_tag": "ALQ_9e630540", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.RNA-Seq.S7_L002_R2.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R2_001.fastq.gz 4880561349 FASTQ S7_L002_R2 unaligned CPTAC3 d88fb2f1-ad91-4ecc-ab43-f8cca98dcb13 212c6d1b529d1566036df648c6ed162b {"aliquot_tag": "ALQ_9e630540", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.RNA-Seq.transcriptome.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.transcriptome.gdc_realn.bam 12039267077 BAM transcriptome harmonized CPTAC3 b95b6769-5aea-4147-99c4-4562ffe25a95 97a45f1395b536ff61a2f73dd251e000 {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.RNA-Seq.transcriptome.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.transcriptome.gdc_realn.bam 12692578325 BAM transcriptome harmonized CPTAC3 b6c72d32-7ebd-46b9-889c-bca4f0da54fe 1836757a5dc43983d9523b75d97dfc6a {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor"} -C3L-00966.WGS.A C3L-00966 CCRCC WGS tissue_normal CPT0101350006 CPT0101350006.WholeGenome.RP-1303.bam 63170432043 BAM aligned CPTAC3 869d1ba0-df18-45b0-a73e-c72be914db9a 12a049daef305ea73478bc31dccc4ad1 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.WGS.A.hg38 C3L-00966 CCRCC WGS tissue_normal CPT0101350006 20b0ba65-fa9c-49ad-850d-d9f3e644a617_wgs_gdc_realn.bam 94012045685 BAM harmonized CPTAC3 133a9d5f-bfdc-4fd2-901c-ab3b32aa4758 4a39d08a5a40d1454739864552d6b5fd {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.WGS.N C3L-00966 CCRCC WGS blood_normal CPT0100950002 CPT0100950002.WholeGenome.RP-1303.bam 61571459125 BAM aligned CPTAC3 e369dfe9-986e-4ead-937a-57312c164f01 758852865163076aeaa5672ff58158fa {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00966.WGS.N.hg38 C3L-00966 CCRCC WGS blood_normal CPT0100950002 ba2edf2f-c23f-47cb-a8c8-cf0110df4fe0_wgs_gdc_realn.bam 91384310737 BAM harmonized CPTAC3 0034826b-bd5e-40a7-9918-cba39f52d6ec 56f00268940520ccc8f32cfa2ac68a9a {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00966.WGS.T C3L-00966 CCRCC WGS tumor CPT0101310009 CPT0101310009.WholeGenome.RP-1303.bam 56129398017 BAM aligned CPTAC3 2891584e-7573-48d6-b30f-46451afbece6 7d102db70dc3bace4ac49b10f82742f5 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor"} -C3L-00966.WGS.T.hg38 C3L-00966 CCRCC WGS tumor CPT0101310009 f26c7002-5320-4a51-9f26-f8b0e703f019_wgs_gdc_realn.bam 81771555164 BAM harmonized CPTAC3 da5bbbe6-8e0f-43b9-a885-7c78b8fb698e 2b665f091545e483a7b04f26226b2530 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor"} -C3L-00966.WXS.A C3L-00966 CCRCC WXS tissue_normal CPT0101350006 CPT0101350006.WholeExome.RP-1303.bam 26539221363 BAM aligned CPTAC3 f0adb25b-1db8-43d5-be50-9175752371cb 2dbd19aad3a584ba717809c62ce415dc {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.WXS.A.hg38 C3L-00966 CCRCC WXS tissue_normal CPT0101350006 20b0ba65-fa9c-49ad-850d-d9f3e644a617_wxs_gdc_realn.bam 35906905747 BAM harmonized CPTAC3 1468e028-cb5d-468d-8873-459532bbe7b6 a2244c107dde5ebbcd33898130cf3d38 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00966.WXS.N C3L-00966 CCRCC WXS blood_normal CPT0100950002 CPT0100950002.WholeExome.RP-1303.bam 37253184915 BAM aligned CPTAC3 12a15929-a647-4a36-954f-3af32fef0155 87c46fdd9ff8b0b4922381c32f7020d6 {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00966.WXS.N.hg38 C3L-00966 CCRCC WXS blood_normal CPT0100950002 ba2edf2f-c23f-47cb-a8c8-cf0110df4fe0_wxs_gdc_realn.bam 51799214449 BAM harmonized CPTAC3 d73cde4d-17b5-44ea-9c2b-00e50d3f5f5b aea6f4df0abb2cc96ce503216d152fa2 {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal"} -C3L-00966.WXS.T C3L-00966 CCRCC WXS tumor CPT0101310009 CPT0101310009.WholeExome.RP-1303.bam 34346536786 BAM aligned CPTAC3 a876152a-33bb-42f0-b328-423dd2d625e8 fc2fbea8ca0dedf2d6b74e815c098c41 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor"} -C3L-00966.WXS.T.hg38 C3L-00966 CCRCC WXS tumor CPT0101310009 f26c7002-5320-4a51-9f26-f8b0e703f019_wxs_gdc_realn.bam 46758625621 BAM harmonized CPTAC3 c66a189e-1417-4892-8ef2-a8777f0cc796 2a839c653f2a1b0f696bfd16dbc4e7a9 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor"} -C3L-00968.MethArray.Green.A C3L-00968 CCRCC Methylation_Array tissue_normal CPT0101740006 204930630034_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7f386d4e-ce25-45e9-aa74-91f3dcb315a5 6068d83f77bc233919ac522ca5b4e700 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.MethArray.Green.T C3L-00968 CCRCC Methylation_Array tumor CPT0101710009 202234380099_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5a8536f4-7a02-40f6-9acf-90db94685872 dad4ce7ce307f69f1356214c6bffdb3d {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor"} -C3L-00968.MethArray.Red.A C3L-00968 CCRCC Methylation_Array tissue_normal CPT0101740006 204930630034_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 fc7b2404-e518-495b-bfd8-c9d2e72d2c43 5e24a94e8b9543da8ae37f67573ab6e7 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.MethArray.Red.T C3L-00968 CCRCC Methylation_Array tumor CPT0101710009 202234380099_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 29167e47-dda7-44d2-979a-97182d918686 0033d9cb22268c883a3446552e11e4e2 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor"} -C3L-00968.miRNA-Seq.A.hg38 C3L-00968 CCRCC miRNA-Seq tissue_normal CPT0101740009 f90cadf2-bfb9-4f16-aaf5-47e8fed1b7a0_mirnaseq_gdc_realn.bam 247004353 BAM harmonized CPTAC3 63177da8-2ff0-4c5e-9cf5-bc0734af7730 ec488034242a3fadfeb0d4e217e0c923 {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.miRNA-Seq.S30_L002_R1.T C3L-00968 CCRCC miRNA-Seq tumor CPT0101710006 181113_UNC31-K00269_0164_AH23NNBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 211803055 BAM S30_L002_R1 unaligned CPTAC3 a0e35251-59e8-418e-8473-329edb85840f 53e870be247594f0772346c5693928f3 {"aliquot_tag": "ALQ_60cdfc07", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00968.miRNA-Seq.S33_L002_R1.A C3L-00968 CCRCC miRNA-Seq tissue_normal CPT0101740009 181119_UNC31-K00269_0165_AH27WCBBXY_GATCAG_S33_L002_R1_001.unaln.bam 221301934 BAM S33_L002_R1 unaligned CPTAC3 d6354f59-2829-407e-a313-15cd0293cc41 3eedba0e36139e3b696e976f9d336d44 {"aliquot_tag": "ALQ_38926ee6", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.miRNA-Seq.T.hg38 C3L-00968 CCRCC miRNA-Seq tumor CPT0101710006 51d0bb48-1228-43c8-a28d-e59389184d55_mirnaseq_gdc_realn.bam 227413825 BAM harmonized CPTAC3 5df763c2-3928-44d2-83d2-0cca7dfb93a9 a46d4e1075333a48baadd021df78f1bc {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor"} -C3L-00968.RNA-Seq.chimeric.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.chimeric.gdc_realn.bam 31571200 BAM chimeric harmonized CPTAC3 e5666130-248d-46fc-a1d5-dcb91e304ad3 d4994640645bb9616cccf6e87255f9e5 {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.RNA-Seq.chimeric.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.chimeric.gdc_realn.bam 29913692 BAM chimeric harmonized CPTAC3 ce0fe8d6-e327-4044-834d-b5be266445e4 a40ff7c1be0619d8a389beebafdd6601 {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor"} -C3L-00968.RNA-Seq.genomic.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.genomic.gdc_realn.bam 8282559979 BAM genomic harmonized CPTAC3 f7123d95-e1c2-4493-9fae-14b392a62249 82c109e55966fc1b927b64d10a71328b {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.RNA-Seq.genomic.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.genomic.gdc_realn.bam 7513282715 BAM genomic harmonized CPTAC3 5c30d6cb-bb0d-4c72-906f-4076718518b1 01bf6aae3ab6089d7761763fd6a9a72d {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor"} -C3L-00968.RNA-Seq.S12_L003_R1.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3575855610 FASTQ S12_L003_R1 unaligned CPTAC3 f25b9f8f-5e30-4124-afe0-729d77b3d245 edf6699fd96b019720bae13ca2ea7b58 {"aliquot_tag": "ALQ_60cdfc07", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00968.RNA-Seq.S12_L003_R2.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3924284333 FASTQ S12_L003_R2 unaligned CPTAC3 2f1c5a8f-a3c4-4da6-ae04-a15168219c03 ffcddcd03fac5afa4ca5b7b3674cf1a8 {"aliquot_tag": "ALQ_60cdfc07", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00968.RNA-Seq.S3_L001_R1.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R1_001.fastq.gz 3713275274 FASTQ S3_L001_R1 unaligned CPTAC3 7ae1bd60-dbef-45c0-85d7-e1d774293b68 0a27abd9e0d80b422f2a221ff20ee690 {"aliquot_tag": "ALQ_38926ee6", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.RNA-Seq.S3_L001_R2.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R2_001.fastq.gz 4213712821 FASTQ S3_L001_R2 unaligned CPTAC3 63d85413-58af-4f8d-a1ad-6b3ddd79769e 8e35d753c5eee96e9dd89aaadbd15d5d {"aliquot_tag": "ALQ_38926ee6", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.RNA-Seq.transcriptome.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.transcriptome.gdc_realn.bam 10250163686 BAM transcriptome harmonized CPTAC3 70de3055-793f-4938-9a9a-87f2123a8ce9 f174738c90a813724815cbfb4d9c3c2f {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.RNA-Seq.transcriptome.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.transcriptome.gdc_realn.bam 11916801924 BAM transcriptome harmonized CPTAC3 67844d0f-b68b-49e6-8984-de7b4a343fff 35702d2c1f7180807a072b34a999d066 {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor"} -C3L-00968.scRNA-Seq.S6_L004_R1.T C3L-00968 CCRCC scRNA-Seq tumor CPT0101710013 20220404_WUSTL_TWHG-CPT0101710013-Y1N1Z1_1Bmn1_1_TTCTCGATGA+GTGCCCGACA_S6_L004_R1_001.fastq.gz 9796769135 FASTQ S6_L004_R1 unaligned CPTAC3 2206bb21-411a-46ab-94e6-a0ca92959b70 4b12c1ebc0206dd887ec78c954c7c867 {"aliquot_tag": "ALQ_9bc39c9", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00968.scRNA-Seq.S6_L004_R2.T C3L-00968 CCRCC scRNA-Seq tumor CPT0101710013 20220404_WUSTL_TWHG-CPT0101710013-Y1N1Z1_1Bmn1_1_TTCTCGATGA+GTGCCCGACA_S6_L004_R2_001.fastq.gz 36120752405 FASTQ S6_L004_R2 unaligned CPTAC3 0d553c4a-d2a9-4ba1-a33c-9cf52485f235 6ec355ac0249cb0750a062141fba2bd3 {"aliquot_tag": "ALQ_9bc39c9", "sample": "S6", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00968.WGS.A C3L-00968 CCRCC WGS tissue_normal CPT0101740006 CPT0101740006.WholeGenome.RP-1303.bam 64142342151 BAM aligned CPTAC3 8df5d7c8-7ce6-413b-8677-fd9d8b05a5e3 7edcd9272a53a65904aa5baff044f1ca {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.WGS.A.hg38 C3L-00968 CCRCC WGS tissue_normal CPT0101740006 19f28427-afc9-4483-8b66-c9593725b3c4_wgs_gdc_realn.bam 93567774209 BAM harmonized CPTAC3 cd580ac5-9490-4f80-9df4-e6b4dffafafd 99d68718ab415395cb89b7641b8d284f {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.WGS.N C3L-00968 CCRCC WGS blood_normal CPT0100990002 CPT0100990002.WholeGenome.RP-1303.bam 62557230591 BAM aligned CPTAC3 e8bf7eed-0992-4ca6-98e8-398383296d38 0d770e60779329c04469b572325ec29b {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00968.WGS.N.hg38 C3L-00968 CCRCC WGS blood_normal CPT0100990002 94ea658f-de60-479f-b2f0-349ba240d3b8_wgs_gdc_realn.bam 90953451881 BAM harmonized CPTAC3 ff053493-07cc-4998-859b-04ce0fdc824c 088965418353095579b685e550aacb7f {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00968.WGS.T C3L-00968 CCRCC WGS tumor CPT0101710009 CPT0101710009.WholeGenome.RP-1303.bam 55534194728 BAM aligned CPTAC3 82726a2b-b81c-4472-b4ec-56638150d8e4 6b311d6a4e5c003208f2bc09f24596b0 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor"} -C3L-00968.WGS.T.hg38 C3L-00968 CCRCC WGS tumor CPT0101710009 1193e39c-6246-46b6-9f68-5a45897acd51_wgs_gdc_realn.bam 82674648239 BAM harmonized CPTAC3 43ca03a2-8737-48c4-87ea-b2a3b63be2e9 cce0bd900dfc0ba91fced101f2913a63 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor"} -C3L-00968.WXS.A C3L-00968 CCRCC WXS tissue_normal CPT0101740006 CPT0101740006.WholeExome.RP-1303.bam 24847703772 BAM aligned CPTAC3 8cd98e0b-b702-4254-be80-6d5f046675db da88c6c43a3bc07df957e21ccc8a2f9f {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.WXS.A.hg38 C3L-00968 CCRCC WXS tissue_normal CPT0101740006 19f28427-afc9-4483-8b66-c9593725b3c4_wxs_gdc_realn.bam 33111006809 BAM harmonized CPTAC3 a7309acf-d34c-4d20-b364-a8616a69f303 28fa958d3f26822f7ca4f1f45c937678 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00968.WXS.N C3L-00968 CCRCC WXS blood_normal CPT0100990002 CPT0100990002.WholeExome.RP-1303.bam 41792116594 BAM aligned CPTAC3 80705b8a-f650-411a-9798-7eaa21f9b4ef 242280c80bdf46474370bdd978ca5410 {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00968.WXS.N.hg38 C3L-00968 CCRCC WXS blood_normal CPT0100990002 94ea658f-de60-479f-b2f0-349ba240d3b8_wxs_gdc_realn.bam 58084121165 BAM harmonized CPTAC3 2f8c2b97-e1b3-42ab-8177-8b3f86a9b5a9 2e8a858ee5c539e6e838e126381f01f3 {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00968.WXS.T C3L-00968 CCRCC WXS tumor CPT0101710009 CPT0101710009.WholeExome.RP-1303.bam 44712945733 BAM aligned CPTAC3 09ffe93b-e6e8-42e7-8618-91b1f6612e4a 39b0ff3cb08132b1f0976b2c9c333b35 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor"} -C3L-00968.WXS.T.hg38 C3L-00968 CCRCC WXS tumor CPT0101710009 1193e39c-6246-46b6-9f68-5a45897acd51_wxs_gdc_realn.bam 61368490861 BAM harmonized CPTAC3 2eeb7056-5840-4b0f-818e-ff1507aafcb8 f507cca900b1bb3e8f6962bc34fda9e4 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor"} -C3L-00969.MethArray.Green.A C3L-00969 CCRCC Methylation_Array tissue_normal CPT0102070006 204930630068_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f3a1c364-449e-47ec-91f9-c31481345a5d f96271e039d1f6d50c5f0b47a55b99b3 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.MethArray.Green.T C3L-00969 CCRCC Methylation_Array tumor CPT0102010009 202234370086_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 45cd8dc5-88bc-4940-b403-b9e85e07c800 02031e64ea99ac7cf0b2df8896e51065 {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor"} -C3L-00969.MethArray.Red.A C3L-00969 CCRCC Methylation_Array tissue_normal CPT0102070006 204930630068_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 e88b106f-bdde-4fd5-b774-3c15c75724cb 0397e9e929349262005efdd45a38c444 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.MethArray.Red.T C3L-00969 CCRCC Methylation_Array tumor CPT0102010009 202234370086_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 4cd692b1-944d-4a2f-a559-48aebd54cca2 faf5733483f408a15b5caaadeddc138c {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor"} -C3L-00969.miRNA-Seq.A.hg38 C3L-00969 CCRCC miRNA-Seq tissue_normal CPT0102070009 314cf241-dd1b-4ba7-b766-b0e5aebf580a_mirnaseq_gdc_realn.bam 334939539 BAM harmonized CPTAC3 f82b516a-0b97-431e-a142-d5c04679213b 6edd687e2fc7fa178c3624b877786997 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.miRNA-Seq.S31_L002_R1.T C3L-00969 CCRCC miRNA-Seq tumor CPT0102010006 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L002_R1_001.unaln.bam 202629795 BAM S31_L002_R1 unaligned CPTAC3 8876b598-a49e-48a8-a442-a3dff5e22382 2f667b9dde90408d45ff9265db56a579 {"aliquot_tag": "ALQ_4c20d622", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00969.miRNA-Seq.S34_L002_R1.A C3L-00969 CCRCC miRNA-Seq tissue_normal CPT0102070009 181119_UNC31-K00269_0165_AH27WCBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 303659022 BAM S34_L002_R1 unaligned CPTAC3 255b014f-7444-4ae8-a81f-8dfdd7d786d9 e2939c35013ef487d863160e5e3ce4c7 {"aliquot_tag": "ALQ_53df3e13", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.miRNA-Seq.T.hg38 C3L-00969 CCRCC miRNA-Seq tumor CPT0102010006 246f1ea6-1f65-4e69-b2c0-a20b857add8e_mirnaseq_gdc_realn.bam 221832152 BAM harmonized CPTAC3 97d80874-3688-4bed-a230-82dfff16a264 3d050c54b2382378607a10dbe5728570 {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor"} -C3L-00969.RNA-Seq.chimeric.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.chimeric.gdc_realn.bam 42524755 BAM chimeric harmonized CPTAC3 95f819c0-3b31-4885-a9ac-bffa5c5c225f 6fbdb0e989382006a0bdfad13ce6a0d8 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.RNA-Seq.chimeric.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.chimeric.gdc_realn.bam 34791597 BAM chimeric harmonized CPTAC3 54c198d0-e61b-4183-a574-148aae7b17a4 e0bbcecef72b44bc4dad1cc3ade072bf {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor"} -C3L-00969.RNA-Seq.genomic.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.genomic.gdc_realn.bam 10941203631 BAM genomic harmonized CPTAC3 3d43c9f0-42f6-4a20-aa92-3e1fa18bc28a 7f2fe87026538bff840bc17dd9c8dab5 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.RNA-Seq.genomic.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.genomic.gdc_realn.bam 7892654597 BAM genomic harmonized CPTAC3 760d3675-ca15-4273-8250-23cd9f942b75 5b5099867570634ef26696dc428d2bc2 {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor"} -C3L-00969.RNA-Seq.S2_L001_R1.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4811687033 FASTQ S2_L001_R1 unaligned CPTAC3 d71baec0-9645-4ba4-b0d4-beeeca043e61 a10de27f8c708243c5e9c6a2ecbf2465 {"aliquot_tag": "ALQ_53df3e13", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.RNA-Seq.S2_L001_R2.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5410316871 FASTQ S2_L001_R2 unaligned CPTAC3 b14bd60b-7a02-408b-94fe-8ac900127f90 b44a9ebac612944e58dccb8614169988 {"aliquot_tag": "ALQ_53df3e13", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.RNA-Seq.S5_L002_R1.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3585790853 FASTQ S5_L002_R1 unaligned CPTAC3 8191da59-7fb9-4d92-ab19-e29a27ff7618 955b1f2950215aa77673aa69540314e6 {"aliquot_tag": "ALQ_4c20d622", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00969.RNA-Seq.S5_L002_R2.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3975192505 FASTQ S5_L002_R2 unaligned CPTAC3 86cbda91-e68a-44a8-9843-b4058c8dd7cf 9464d30a6406808ef9bf13f0f747dae8 {"aliquot_tag": "ALQ_4c20d622", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00969.RNA-Seq.transcriptome.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.transcriptome.gdc_realn.bam 13070353075 BAM transcriptome harmonized CPTAC3 550e9268-9515-411e-884e-a99f265f4ad3 e25ba5ae90d2677a6176de0eb650d797 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.RNA-Seq.transcriptome.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.transcriptome.gdc_realn.bam 10800068983 BAM transcriptome harmonized CPTAC3 885f4961-a198-4610-a1ac-7409e715d73e 964ce6a885d058f0cc7888efc056ee1d {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor"} -C3L-00969.WGS.A C3L-00969 CCRCC WGS tissue_normal CPT0102070006 CPT0102070006.WholeGenome.RP-1303.bam 54316001799 BAM aligned CPTAC3 15587d85-160e-4f50-aeca-10533661811c a8c8809691f83ddd9c323361f7359c89 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.WGS.A.hg38 C3L-00969 CCRCC WGS tissue_normal CPT0102070006 5a206a66-23fe-4f18-a875-9f36ee98058a_wgs_gdc_realn.bam 78647664150 BAM harmonized CPTAC3 c959ca04-34c3-46b8-8326-bb8d625e9f53 1f4923fbbb105ae368bfc47a37e756c9 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.WGS.N C3L-00969 CCRCC WGS blood_normal CPT0101010002 CPT0101010002.WholeGenome.RP-1303.bam 67580610441 BAM aligned CPTAC3 c78869ef-6540-4d9d-82cc-412b3ba1626e f4582d48e9707fecb553a1989c569362 {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00969.WGS.N.hg38 C3L-00969 CCRCC WGS blood_normal CPT0101010002 5611d5c1-d2cf-4543-9aac-b4e554d5c5d6_wgs_gdc_realn.bam 100038847882 BAM harmonized CPTAC3 50b726a5-d7ac-4259-8722-1b4176af3ec5 5ecf3cd0ae2636636ab24befe8cfeb3b {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00969.WGS.T C3L-00969 CCRCC WGS tumor CPT0102010009 CPT0102010009.WholeGenome.RP-1303.bam 61067151832 BAM aligned CPTAC3 e1d12569-e2af-4c41-b1d6-04551fbdf95b 6bf54be13c3741735ab500427744b99f {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor"} -C3L-00969.WGS.T.hg38 C3L-00969 CCRCC WGS tumor CPT0102010009 0504094f-f1e5-4452-802b-54858371ebf4_wgs_gdc_realn.bam 89445654775 BAM harmonized CPTAC3 e9ab4e32-b8b7-4d50-87a9-e041a11fbbd8 ec792c41b1ffe0e31af473db4e5b934e {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor"} -C3L-00969.WXS.A C3L-00969 CCRCC WXS tissue_normal CPT0102070006 CPT0102070006.WholeExome.RP-1303.bam 32562978510 BAM aligned CPTAC3 1bf29e4f-d77f-456b-b889-40db77569f35 542663a374d9d70e712f53a5aab0320c {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.WXS.A.hg38 C3L-00969 CCRCC WXS tissue_normal CPT0102070006 5a206a66-23fe-4f18-a875-9f36ee98058a_wxs_gdc_realn.bam 43985573761 BAM harmonized CPTAC3 3ca6ae90-5f4e-4798-922a-327b23ee9f30 9390db2518b5f39b371417f7ccf7c07a {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00969.WXS.N C3L-00969 CCRCC WXS blood_normal CPT0101010002 CPT0101010002.WholeExome.RP-1303.bam 42047154970 BAM aligned CPTAC3 1dd59b72-34a9-4717-b5b4-be0746b4a220 7600f6ff2f5f4a712cd2d2d35d1c2c5c {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00969.WXS.N.hg38 C3L-00969 CCRCC WXS blood_normal CPT0101010002 5611d5c1-d2cf-4543-9aac-b4e554d5c5d6_wxs_gdc_realn.bam 56889971179 BAM harmonized CPTAC3 932a51c9-7f60-4c9d-912a-15b1c13ea0c1 3eec0b9b8d53a1eb4e44492b05d38e07 {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00969.WXS.T C3L-00969 CCRCC WXS tumor CPT0102010009 CPT0102010009.WholeExome.RP-1303.bam 26081709366 BAM aligned CPTAC3 15661192-9662-4e3d-b959-106b5d864f6c 75c9b790ae563c8fd6138716be1adc73 {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor"} -C3L-00969.WXS.T.hg38 C3L-00969 CCRCC WXS tumor CPT0102010009 0504094f-f1e5-4452-802b-54858371ebf4_wxs_gdc_realn.bam 35300972086 BAM harmonized CPTAC3 8657feac-38e8-480b-95da-c939e6e56ab0 71dd983a69df31eba889f3189d0a2f44 {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor"} -C3L-00970.MethArray.Green.A C3L-00970 CCRCC Methylation_Array tissue_normal CPT0102280006 204930630114_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d732b7d4-3051-446e-982b-9c1fbe290bc3 6d992735635e408ccd60e2764495aaa6 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.MethArray.Green.T C3L-00970 CCRCC Methylation_Array tumor CPT0102240009 202234380017_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 003a7878-09f2-4d1c-8b13-05d519b8b52e b4050ff34851b81c24ffb8d75555f728 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor"} -C3L-00970.MethArray.Red.A C3L-00970 CCRCC Methylation_Array tissue_normal CPT0102280006 204930630114_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 e21901a8-a915-4296-9164-bbafb5c7999a f37abdf18590c05d5cc85d3826c62745 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.MethArray.Red.T C3L-00970 CCRCC Methylation_Array tumor CPT0102240009 202234380017_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 60f6078e-d7b2-46d3-9c32-1f7bedea4df8 b7764ba30cf14d02df57a582367cbff7 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor"} -C3L-00970.miRNA-Seq.A.hg38 C3L-00970 CCRCC miRNA-Seq tissue_normal CPT0102280009 8f5ed2ae-3b7e-458d-8295-c5a0b4bc3686_mirnaseq_gdc_realn.bam 316468477 BAM harmonized CPTAC3 8dcc72ff-7332-4f47-8f45-aed9b76ac4ac f0bf32a860415e13bb9bf78653e91a57 {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.miRNA-Seq.S16_L003_R1.T C3L-00970 CCRCC miRNA-Seq tumor CPT0102240006 181113_UNC31-K00269_0164_AH23NNBBXY_CTCAGA_S16_L003_R1_001.unaln.bam 221501923 BAM S16_L003_R1 unaligned CPTAC3 c250f932-1279-4482-ba5e-1d42498e6df2 34b5c6e42659e29081c6a783a0b91df2 {"aliquot_tag": "ALQ_c908f859", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00970.miRNA-Seq.S35_L002_R1.A C3L-00970 CCRCC miRNA-Seq tissue_normal CPT0102280009 181119_UNC31-K00269_0165_AH27WCBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 282502606 BAM S35_L002_R1 unaligned CPTAC3 1a535b1e-fdad-4548-8c5a-aeb3cecd4656 eae0e8f4da84715c2ac57988d9a1d46a {"aliquot_tag": "ALQ_9c4708c9", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.miRNA-Seq.T.hg38 C3L-00970 CCRCC miRNA-Seq tumor CPT0102240006 3700ab0e-8fc8-49c0-af61-d0a6164cd3c8_mirnaseq_gdc_realn.bam 250267244 BAM harmonized CPTAC3 4f12ce47-19d4-46a0-b5bf-3c161bd7948d 1f2a2d809abefae8a96006b5d2c7dc1b {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor"} -C3L-00970.RNA-Seq.chimeric.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.chimeric.gdc_realn.bam 36258165 BAM chimeric harmonized CPTAC3 1e5971c9-ebee-4497-ae12-c153010f3003 b7b37e2d9613ac25dbf9ad63de45f3ac {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.RNA-Seq.chimeric.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.chimeric.gdc_realn.bam 31458537 BAM chimeric harmonized CPTAC3 5116e40f-3d11-488f-8a57-07e4fa9c7dee 17d2e306cda25b2e655820c68823aeed {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor"} -C3L-00970.RNA-Seq.genomic.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.genomic.gdc_realn.bam 10256570338 BAM genomic harmonized CPTAC3 2bc7677d-d44a-408e-8e14-81fa7e18da87 fb45123c43a430bb266743ab4526d393 {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.RNA-Seq.genomic.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.genomic.gdc_realn.bam 8404271926 BAM genomic harmonized CPTAC3 394817ae-5d79-426e-8689-e056772dcaee 2cab4e4a751ab69e17f34298ee3ca5cf {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor"} -C3L-00970.RNA-Seq.S1_L001_R1.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4103117952 FASTQ S1_L001_R1 unaligned CPTAC3 c72b97fd-e051-471e-a83c-37674479d7e8 21723dc9204ae71b3ee585708221d5cf {"aliquot_tag": "ALQ_9c4708c9", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.RNA-Seq.S1_L001_R2.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4789445691 FASTQ S1_L001_R2 unaligned CPTAC3 2388d568-7a9a-41db-93db-8e173548c323 883fccf9a035e9876b0ef7a9a18eb67a {"aliquot_tag": "ALQ_9c4708c9", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.RNA-Seq.S6_L002_R1.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3904880581 FASTQ S6_L002_R1 unaligned CPTAC3 eee4375e-6405-43a0-9df9-dd7c1dc7a590 74195878379f842127951832ba71646a {"aliquot_tag": "ALQ_c908f859", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00970.RNA-Seq.S6_L002_R2.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4363680591 FASTQ S6_L002_R2 unaligned CPTAC3 eb10a154-b057-416d-ba22-2d8e09b5ba67 ef2b610e9d0cf943bf23ad068d6e00c6 {"aliquot_tag": "ALQ_c908f859", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00970.RNA-Seq.transcriptome.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.transcriptome.gdc_realn.bam 10779807311 BAM transcriptome harmonized CPTAC3 11379878-7d32-4248-a1bd-5cb168aab363 a6eaf1080ef1082e66b1ce283a80c010 {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.RNA-Seq.transcriptome.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.transcriptome.gdc_realn.bam 10838156962 BAM transcriptome harmonized CPTAC3 aef26d2e-3fa0-45f1-a774-34c95182d436 21c77edad21d781679011e0cb20247fa {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor"} -C3L-00970.WGS.A C3L-00970 CCRCC WGS tissue_normal CPT0102280006 CPT0102280006.WholeGenome.RP-1303.bam 61604359960 BAM aligned CPTAC3 2bd25292-8fcf-4f09-b252-13a378b310e8 c6aecf4d1995b5512e3708d260bdfea0 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.WGS.A.hg38 C3L-00970 CCRCC WGS tissue_normal CPT0102280006 2b440467-5dea-4683-8499-db738bd1eba9_wgs_gdc_realn.bam 89305971491 BAM harmonized CPTAC3 f230596d-752e-4c3e-875a-275b904eddc7 a9aaf5ae97db9bed067d9252b8a44196 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.WGS.N C3L-00970 CCRCC WGS blood_normal CPT0101030002 CPT0101030002.WholeGenome.RP-1303.bam 56917246510 BAM aligned CPTAC3 2f4ce378-9e82-49bc-b041-cd5e15812b2c cab80dfedb96bb66e0dfaa365818bdb4 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00970.WGS.N.hg38 C3L-00970 CCRCC WGS blood_normal CPT0101030002 136f342e-618f-48c7-9789-e627a84526d6_wgs_gdc_realn.bam 85039427128 BAM harmonized CPTAC3 2dda5d69-9a9e-45a1-ad6b-745268c1c5e4 6c2a6b1d6e33a01c49643eb2f05cb3a1 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00970.WGS.T C3L-00970 CCRCC WGS tumor CPT0102240009 CPT0102240009.WholeGenome.RP-1303.bam 62871430614 BAM aligned CPTAC3 0b3f0a19-ba06-4b3c-8250-3fb083e6dae8 e76ecb9a89c0415d5ed494f417cd5354 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor"} -C3L-00970.WGS.T.hg38 C3L-00970 CCRCC WGS tumor CPT0102240009 6e2e4c4a-3686-4a3d-b09f-b7c7a212ce65_wgs_gdc_realn.bam 91983045766 BAM harmonized CPTAC3 e6757b3d-ca42-43b2-91b5-2564f2fc038a c7d249eeea3c04df6eda6188e93cbc89 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor"} -C3L-00970.WXS.A C3L-00970 CCRCC WXS tissue_normal CPT0102280006 CPT0102280006.WholeExome.RP-1303.bam 30668611346 BAM aligned CPTAC3 d5507536-6c94-4274-abb8-df585c1663f7 243a79fe40b2008084cd636d4863798b {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.WXS.A.hg38 C3L-00970 CCRCC WXS tissue_normal CPT0102280006 2b440467-5dea-4683-8499-db738bd1eba9_wxs_gdc_realn.bam 40701316796 BAM harmonized CPTAC3 cceb8df3-3ce8-40b7-a15f-19f6c601b90a 1b223413331cfe109505cd1348a7235f {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00970.WXS.N C3L-00970 CCRCC WXS blood_normal CPT0101030002 CPT0101030002.WholeExome.RP-1303.bam 42193316538 BAM aligned CPTAC3 7a7e348b-9850-4823-92ae-3be19e49fdb3 02f1003cc5ed9fff58270a218460d729 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00970.WXS.N.hg38 C3L-00970 CCRCC WXS blood_normal CPT0101030002 136f342e-618f-48c7-9789-e627a84526d6_wxs_gdc_realn.bam 57510266487 BAM harmonized CPTAC3 18f64221-b89d-419e-ac37-b2c97aefeb2a 7ff43be7487e2cf0f6acd162d89d29c4 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal"} -C3L-00970.WXS.T C3L-00970 CCRCC WXS tumor CPT0102240009 CPT0102240009.WholeExome.RP-1303.bam 30660620816 BAM aligned CPTAC3 c254b35d-f836-445b-b507-31dfc59f1bb0 8c8025134267de130523faea253d6c6c {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor"} -C3L-00970.WXS.T.hg38 C3L-00970 CCRCC WXS tumor CPT0102240009 6e2e4c4a-3686-4a3d-b09f-b7c7a212ce65_wxs_gdc_realn.bam 41661750429 BAM harmonized CPTAC3 d131ff80-06ff-430c-bcc6-05ab73189502 a58e12a2615e4f0398900ff3960ea282 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor"} -C3L-00973.MethArray.Green.A C3L-00973 LUAD Methylation_Array tissue_normal CPT0102480009 203028200048_R03C01_Grn.idat 13676238 IDAT Green NA CPTAC3 2f855940-b18f-4a2d-8a62-95714cc3512c d5617255152a32fc31e6ea877a62bddd {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.MethArray.Green.T C3L-00973 LUAD Methylation_Array tumor CPT0102450009 202234380062_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e8fe55fe-b2e0-4377-8638-239311067b24 2451a41674be52342db2e24b902fc57a {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor"} -C3L-00973.MethArray.Red.A C3L-00973 LUAD Methylation_Array tissue_normal CPT0102480009 203028200048_R03C01_Red.idat 13676238 IDAT Red NA CPTAC3 445b072b-44a4-4ae3-95c2-2f8a290ccc96 3acdf50b6d3863a5227ad2ee19dbf6fa {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.MethArray.Red.T C3L-00973 LUAD Methylation_Array tumor CPT0102450009 202234380062_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 adf481be-f7c0-478b-8e6c-92a2627150f3 3f64f6b33220426853457ac05d40dbb0 {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor"} -C3L-00973.miRNA-Seq.A.hg38 C3L-00973 LUAD miRNA-Seq tissue_normal CPT0102480006 1c15f6bb-bf66-4c73-a140-e6735d73181b_mirnaseq_gdc_realn.bam 205995660 BAM harmonized CPTAC3 5f4de5ba-00d7-4ece-b731-ed8688ed7d2a 24d835128b75395e6a5ea99f4d478b8b {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.miRNA-Seq.S32_L002_R1.T C3L-00973 LUAD miRNA-Seq tumor CPT0102450006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTTGA_S32_L002_R1_001.unaln.bam 201419237 BAM S32_L002_R1 unaligned CPTAC3 faf5b1f6-a765-4f43-ad06-3b0f9e33bfc1 ea8926bd1dfca5cd4d33204d2151127f {"aliquot_tag": "ALQ_223132f4", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00973.miRNA-Seq.S43_L002_R1.A C3L-00973 LUAD miRNA-Seq tissue_normal CPT0102480006 181108_UNC31-K00269_0163_BH23TVBBXY_TACAGC_S43_L002_R1_001.unaln.bam 183330432 BAM S43_L002_R1 unaligned CPTAC3 fd7e0fc5-d407-44ea-b8a0-0c8d7b483787 574237ea956fb8bbc37b00033946429e {"aliquot_tag": "ALQ_daa1f645", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.miRNA-Seq.T.hg38 C3L-00973 LUAD miRNA-Seq tumor CPT0102450006 53d196ae-c941-42cb-ab49-b231ae30842e_mirnaseq_gdc_realn.bam 223681438 BAM harmonized CPTAC3 34fe47a5-d41f-48a6-8c2d-0efeeb6e1d31 8ab08a032207065c16c69b8c5c79a437 {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor"} -C3L-00973.RNA-Seq.chimeric.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.chimeric.gdc_realn.bam 38606310 BAM chimeric harmonized CPTAC3 7fad1b0b-1a71-4373-a8eb-554755c2b5e1 ea4f20f87bfced1418034848de24b5bb {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.RNA-Seq.chimeric.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.chimeric.gdc_realn.bam 30242420 BAM chimeric harmonized CPTAC3 846dac18-82ef-4259-9b12-e5b7e1cf3010 03852364f8a4feb286b9364d2e8ab24f {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor"} -C3L-00973.RNA-Seq.genomic.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.genomic.gdc_realn.bam 6629267678 BAM genomic harmonized CPTAC3 9f751729-e50f-4f16-8ba8-cde05b7ea90f 5307f351af35e059f51ade024850cc56 {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.RNA-Seq.genomic.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.genomic.gdc_realn.bam 8909848053 BAM genomic harmonized CPTAC3 24217a82-e4dd-4444-893b-4f88e3035383 7163c60ef4834d15d3bcb057a349d056 {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor"} -C3L-00973.RNA-Seq.S19_L005_R1.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 3382647784 FASTQ S19_L005_R1 unaligned CPTAC3 6afb7982-855b-4f29-8cb9-65348024e16b 602079e37788350e38b4dd1f574d2c3b {"aliquot_tag": "ALQ_daa1f645", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.RNA-Seq.S19_L005_R2.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 3570586126 FASTQ S19_L005_R2 unaligned CPTAC3 8a6f24e8-d172-4d34-a3a5-34aaf06cc554 deccf68219918a1b8decc2ec33daff32 {"aliquot_tag": "ALQ_daa1f645", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.RNA-Seq.S8_L002_R1.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4080024026 FASTQ S8_L002_R1 unaligned CPTAC3 dde76172-11ea-42ed-b376-abb20a41fcbd c5539a84f7a8f742be3ecf56853efe39 {"aliquot_tag": "ALQ_223132f4", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00973.RNA-Seq.S8_L002_R2.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4508756621 FASTQ S8_L002_R2 unaligned CPTAC3 f5ac887f-57cc-4f16-97af-b2bc03591d05 5542f1f80c8a85261d325eac3170bb78 {"aliquot_tag": "ALQ_223132f4", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00973.RNA-Seq.transcriptome.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.transcriptome.gdc_realn.bam 8169214512 BAM transcriptome harmonized CPTAC3 80e20b9a-73da-44f4-b028-c9163eb81fbe b39444c52e3876a5b6c5081a93427007 {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.RNA-Seq.transcriptome.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.transcriptome.gdc_realn.bam 10761312468 BAM transcriptome harmonized CPTAC3 0bbe28e7-e2fa-4073-8a52-1d8be82c899f cbd8ad736e4794fe5e82ebfa162d0f91 {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor"} -C3L-00973.WGS.A C3L-00973 LUAD WGS tissue_normal CPT0102480009 CPT0102480009.WholeGenome.RP-1303.bam 62289238241 BAM aligned CPTAC3 2ec77b83-b306-4799-a3a5-59f553416ea3 96b90b77e40958d11241780486bc651d {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.WGS.A.hg38 C3L-00973 LUAD WGS tissue_normal CPT0102480009 a5d626de-da00-4c72-877a-1d9e2a6ea6d0_wgs_gdc_realn.bam 90654770367 BAM harmonized CPTAC3 3fe84cdc-f13d-43e0-8bfa-6608e8bb45b3 8bd6d70dcdf443ecfbb26807fa547cf8 {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.WGS.N C3L-00973 LUAD WGS blood_normal CPT0101050002 CPT0101050002.WholeGenome.RP-1303.bam 56530670347 BAM aligned CPTAC3 3c30835c-01ee-4b84-94e4-58796cfc1965 5ade04d2c1a7f3dbbff3035dcde08578 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal"} -C3L-00973.WGS.N.hg38 C3L-00973 LUAD WGS blood_normal CPT0101050002 4ae4f34f-1fdd-46ce-8b23-e7558b3f2a92_wgs_gdc_realn.bam 82060420662 BAM harmonized CPTAC3 471ef584-8629-4a6a-9bdb-1e4631cc1123 2c8f7c5b154a0bd91e44e3d0fcfba508 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal"} -C3L-00973.WGS.T C3L-00973 LUAD WGS tumor CPT0102450009 CPT0102450009.WholeGenome.RP-1303.bam 56092350571 BAM aligned CPTAC3 a0bcb953-f458-4012-8ccf-577dcf4acbc6 581707c1c3686e879320e6f4247b8765 {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor"} -C3L-00973.WGS.T.hg38 C3L-00973 LUAD WGS tumor CPT0102450009 d76dbd49-7705-404a-a526-36c29dc4b2e5_wgs_gdc_realn.bam 82744436486 BAM harmonized CPTAC3 5eeb8459-f031-4c2b-b235-381c69f26c22 2ba2a0f9b12335233c6b3d8d45c6c22c {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor"} -C3L-00973.WXS.A C3L-00973 LUAD WXS tissue_normal CPT0102480009 CPT0102480009.WholeExome.RP-1303.bam 42590522427 BAM aligned CPTAC3 b7ffbcdd-9493-4578-83e4-9de9147d5929 bd980190efcba1bf6fb38c893f0bb331 {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.WXS.A.hg38 C3L-00973 LUAD WXS tissue_normal CPT0102480009 a5d626de-da00-4c72-877a-1d9e2a6ea6d0_wxs_gdc_realn.bam 57135015167 BAM harmonized CPTAC3 2e16175d-3a13-434e-b3f9-8f266f19e9fb 2d3f8d2406e30943164f3f07eddd1960 {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00973.WXS.N C3L-00973 LUAD WXS blood_normal CPT0101050002 CPT0101050002.WholeExome.RP-1303.bam 31805651609 BAM aligned CPTAC3 a8d2cf1a-472a-4bc7-8c01-aec55455ea9c 11c0765b9d6bef5666eec6fb4b441ed0 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal"} -C3L-00973.WXS.N.hg38 C3L-00973 LUAD WXS blood_normal CPT0101050002 4ae4f34f-1fdd-46ce-8b23-e7558b3f2a92_wxs_gdc_realn.bam 42320130711 BAM harmonized CPTAC3 bbf65579-b6c1-4b1f-81fa-8baad63d7e19 c3f53d17333590a1d012e59272e55706 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal"} -C3L-00973.WXS.T C3L-00973 LUAD WXS tumor CPT0102450009 CPT0102450009.WholeExome.RP-1303.bam 37014647299 BAM aligned CPTAC3 ce191997-0781-421a-b02e-8ae870697ae0 fcd91c7eb2f228cab571283fc79e2479 {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor"} -C3L-00973.WXS.T.hg38 C3L-00973 LUAD WXS tumor CPT0102450009 d76dbd49-7705-404a-a526-36c29dc4b2e5_wxs_gdc_realn.bam 50342118691 BAM harmonized CPTAC3 0e52d04e-f841-4e3b-9a00-00bfbb5b4fae 47c6daf09722b7411d84a16a7d95a67a {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor"} -C3L-00976.MethArray.Green.A C3L-00976 CCRCC Methylation_Array tissue_normal CPT0169550006 204930630081_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 d70df072-73c1-458a-936b-ae328d3c0806 4b9e5d41e4ea6c40ebd58b61d5be1535 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.MethArray.Green.T C3L-00976 CCRCC Methylation_Array tumor CPT0169530006 203219670180_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 e4e38ce9-5760-461f-bc8d-a30c476ccbcd 48fd4e7a20f08ed78ed6ef7a045bbc13 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor"} -C3L-00976.MethArray.Red.A C3L-00976 CCRCC Methylation_Array tissue_normal CPT0169550006 204930630081_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 ad68da72-2f16-458e-bc0a-654247a02d37 6a03da3a768ac5b94d53dedc054c20e5 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.MethArray.Red.T C3L-00976 CCRCC Methylation_Array tumor CPT0169530006 203219670180_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 cc37f90f-3e9e-4c95-ba3b-32fdc5eee367 bea1dee857d019f91174c582192392a1 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor"} -C3L-00976.miRNA-Seq.A.hg38 C3L-00976 CCRCC miRNA-Seq tissue_normal CPT0169550009 74470bc5-dd47-4fe4-ad5a-fea836abe0cf_mirnaseq_gdc_realn.bam 250763002 BAM harmonized CPTAC3 f6e90b1d-7d87-401e-a1f6-a6a2e846420f a8081b1c31a8c54dceebd66454caf6a7 {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.miRNA-Seq.S15_L002_R1.A C3L-00976 CCRCC miRNA-Seq tissue_normal CPT0169550009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L002_R1_001.unaln.bam 230806608 BAM S15_L002_R1 unaligned CPTAC3 9ab665e7-0f7a-4638-8a58-12ecfac17a45 fcc17fde43dbf4ce561774eaa68f4ca6 {"aliquot_tag": "ALQ_bdbaa1bd", "sample": "S15", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.RNA-Seq.chimeric.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.chimeric.gdc_realn.bam 130694466 BAM chimeric harmonized CPTAC3 4829958d-2b27-42c4-be06-49b712bb2a22 0b9e3eda36462fb4ba268cc1b222c82c {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.RNA-Seq.chimeric.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.chimeric.gdc_realn.bam 26652714 BAM chimeric harmonized CPTAC3 14d03110-7a33-44fe-9b93-5c3ed7fc4f39 78afc6df01a842c65c28d8edad09aa0f {"aliquot_tag": "ALQ_32fa541d", "gdc_sample_type": "Primary Tumor"} -C3L-00976.RNA-Seq.genomic.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.genomic.gdc_realn.bam 9861345934 BAM genomic harmonized CPTAC3 8f9f35a1-ad88-44ae-b825-72831cd9f353 9a6f421cb3c44647a2691157c3bb33a3 {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.RNA-Seq.genomic.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.genomic.gdc_realn.bam 6007219957 BAM genomic harmonized CPTAC3 eaf2fb8f-a701-46e2-bb0f-51153e72e7f4 264ed2db2f3436b533f7d3fe4b7d5d52 {"aliquot_tag": "ALQ_32fa541d", "gdc_sample_type": "Primary Tumor"} -C3L-00976.RNA-Seq.S10_L003_R1.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 3081439503 FASTQ S10_L003_R1 unaligned CPTAC3 8a2053e0-f076-466e-b4f4-d543d905dab2 7790b01c910f96e4cfe33efd8f7ee851 {"aliquot_tag": "ALQ_32fa541d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00976.RNA-Seq.S10_L003_R2.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 3227003334 FASTQ S10_L003_R2 unaligned CPTAC3 e1950e0d-42f3-46c4-8263-22f695311fab 2a7061e876114259268c6b268f69b562 {"aliquot_tag": "ALQ_32fa541d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00976.RNA-Seq.S14_L006_R1.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R1_001.fastq.gz 4347968784 FASTQ S14_L006_R1 unaligned CPTAC3 1a199184-989d-43da-b65f-0465fd0cb533 e306418eb5e8ecc117e0256197bbee0f {"aliquot_tag": "ALQ_bdbaa1bd", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.RNA-Seq.S14_L006_R2.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R2_001.fastq.gz 4723750748 FASTQ S14_L006_R2 unaligned CPTAC3 7358fbaa-cace-45ef-9ee9-6c16db5ad038 c5bcb5e02a6904776da704d22c3fa7c7 {"aliquot_tag": "ALQ_bdbaa1bd", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.RNA-Seq.transcriptome.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.transcriptome.gdc_realn.bam 10906745804 BAM transcriptome harmonized CPTAC3 2edea369-f9ed-4def-8ff0-19270acda64d 98af7358fd40e7558cb4af9bd534fdb9 {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.RNA-Seq.transcriptome.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.transcriptome.gdc_realn.bam 8513342764 BAM transcriptome harmonized CPTAC3 5db823b1-523b-45a0-9c94-60c505c7af34 50ad5117c67851794e703e0f324c29ff {"aliquot_tag": "ALQ_32fa541d", "gdc_sample_type": "Primary Tumor"} -C3L-00976.WGS.A C3L-00976 CCRCC WGS tissue_normal CPT0169550006 CPT0169550006.WholeGenome.RP-1303.bam 60104283764 BAM aligned CPTAC3 4585ff5a-8aab-417a-ba31-6f05adcebadc 9c60ce4ea5986550712f4f3991952090 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.WGS.A.hg38 C3L-00976 CCRCC WGS tissue_normal CPT0169550006 12b82e88-1e23-48e6-8d3d-e180d3d952be_wgs_gdc_realn.bam 87834237905 BAM harmonized CPTAC3 963033ca-b255-486d-80bc-854752529110 1030202bc8e2afae98c6b00c8510add8 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.WGS.N C3L-00976 CCRCC WGS blood_normal CPT0167130002 CPT0167130002.WholeGenome.RP-1303.bam 55013882431 BAM aligned CPTAC3 e61e0379-f61b-4a88-af05-638b3bce2256 edeb86d81a4acc7bd107eaf6a894f747 {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal"} -C3L-00976.WGS.N.hg38 C3L-00976 CCRCC WGS blood_normal CPT0167130002 f1ebce9b-ce42-47c8-a9f6-ab986671ea3b_wgs_gdc_realn.bam 80787995548 BAM harmonized CPTAC3 5ff39522-a8d7-48f6-9bb8-5adfca2172e2 7905d4cd95691620b1a79e6cae67cf0b {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal"} -C3L-00976.WGS.T C3L-00976 CCRCC WGS tumor CPT0169530006 CPT0169530006.WholeGenome.RP-1303.bam 53782560741 BAM aligned CPTAC3 6731e1fe-a32b-458d-89f8-264e5482fbc3 304c521016ce9c1fbe4f1f1ced814167 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor"} -C3L-00976.WGS.T.hg38 C3L-00976 CCRCC WGS tumor CPT0169530006 52ac9c21-85f5-4f76-8527-2dbab9167bc0_wgs_gdc_realn.bam 78516368830 BAM harmonized CPTAC3 fd7bebcd-98c7-4723-b549-9f3a2416342f f0b1b092e65b6fa14255ce30466ed3bc {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor"} -C3L-00976.WXS.A C3L-00976 CCRCC WXS tissue_normal CPT0169550006 CPT0169550006.WholeExome.RP-1303.bam 19995620092 BAM aligned CPTAC3 b0a1603b-89fc-4fe3-b282-239312503ea5 8c8c56e341b53770180bbbea755c4628 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.WXS.A.hg38 C3L-00976 CCRCC WXS tissue_normal CPT0169550006 12b82e88-1e23-48e6-8d3d-e180d3d952be_wxs_gdc_realn.bam 28275463252 BAM harmonized CPTAC3 1905b40e-cfca-4b56-8dc8-182514ad646a 71a31a6055a2527f29245e618c9da818 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00976.WXS.N C3L-00976 CCRCC WXS blood_normal CPT0167130002 CPT0167130002.WholeExome.RP-1303.bam 23215594839 BAM aligned CPTAC3 eae50e77-d7d0-407e-a035-66b077d86b5f d21d920ad40f335efddc3a9a057dbff6 {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal"} -C3L-00976.WXS.N.hg38 C3L-00976 CCRCC WXS blood_normal CPT0167130002 f1ebce9b-ce42-47c8-a9f6-ab986671ea3b_wxs_gdc_realn.bam 32609491520 BAM harmonized CPTAC3 d1591991-7fdb-41c0-899b-4377dccb1337 a79c767ae35e4dd4aa0a0cdebca6a7b5 {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal"} -C3L-00976.WXS.T C3L-00976 CCRCC WXS tumor CPT0169530006 CPT0169530006.WholeExome.RP-1303.bam 23165365637 BAM aligned CPTAC3 f868468c-e8c0-4ba1-8f14-a2cad87f332d d339079ed7f8780f288a1f766dae5d85 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor"} -C3L-00976.WXS.T.hg38 C3L-00976 CCRCC WXS tumor CPT0169530006 52ac9c21-85f5-4f76-8527-2dbab9167bc0_wxs_gdc_realn.bam 31915013237 BAM harmonized CPTAC3 a47eb566-f097-4d1b-af60-df129ec5e11c d723fa0bf9eedd254d2797a38b9bafb5 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor"} -C3L-00977.MethArray.Green.A C3L-00977 HNSCC Methylation_Array tissue_normal CPT0169650006 203271750010_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e99695cc-399a-4c57-a6af-d33f4c6eed9d cf4639cd88858bbcd555a1da4069acd4 {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.MethArray.Green.T C3L-00977 HNSCC Methylation_Array tumor CPT0169640006 203219650071_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d8f0ba41-ae39-482a-a362-c20391bd9c9d 085d799bb33520c6c52c00e5b25fe6d1 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor"} -C3L-00977.MethArray.Red.A C3L-00977 HNSCC Methylation_Array tissue_normal CPT0169650006 203271750010_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 675cb06a-d96f-4f3a-9f70-f37595ea532d ee9bfd64fcb1987aeb6445927a4ffdae {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.MethArray.Red.T C3L-00977 HNSCC Methylation_Array tumor CPT0169640006 203219650071_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 cf417715-8bca-4196-940c-265902d9db00 852dfa5bc3fef9d0544902299feb3d52 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor"} -C3L-00977.miRNA-Seq.A.hg38 C3L-00977 HNSCC miRNA-Seq tissue_normal CPT0169650008 07c1c0e7-a96e-4ed8-8a9a-f12764790406_mirnaseq_gdc_realn.bam 252960813 BAM harmonized CPTAC3 a4556e08-acca-4132-b972-3c3b9efb2471 50ffa194e5b3f0da8a70dd692ef8be88 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.miRNA-Seq.S36_L002_R1.T C3L-00977 HNSCC miRNA-Seq tumor CPT0169640009 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L002_R1_001.unaln.bam 273428688 BAM S36_L002_R1 unaligned CPTAC3 a3c9b316-3105-4136-82e5-202db7a69a5b 051ca6cb6eeb09a73117f1fb461e4796 {"aliquot_tag": "ALQ_64efaa3", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00977.miRNA-Seq.S40_L002_R1.A C3L-00977 HNSCC miRNA-Seq tissue_normal CPT0169650008 190228_UNC32-K00270_0151_AHYLY3BBXX_CTCAGA_S40_L002_R1_001.unaln.bam 221320582 BAM S40_L002_R1 unaligned CPTAC3 565cb06c-4fce-4e60-a44a-1a435f03a674 2c3786574e36cc96924596b06b4c0c80 {"aliquot_tag": "ALQ_4c29e385", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.miRNA-Seq.T.hg38 C3L-00977 HNSCC miRNA-Seq tumor CPT0169640009 0992ab07-5423-4e81-8a70-f97ace23d8e7_mirnaseq_gdc_realn.bam 303737852 BAM harmonized CPTAC3 596b3c93-1e7b-44e1-9df6-add41ec22dad a7dae07e528c85c12fb66ad6eb636ded {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.chimeric.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.chimeric.gdc_realn.bam 55928106 BAM chimeric harmonized CPTAC3 57f2bd66-6fd0-4e77-b76b-450cf306797a b7d08bfcdbfff1a560b6c4de63bf0651 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.RNA-Seq.chimeric.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.chimeric.gdc_realn.bam 107431441 BAM chimeric harmonized CPTAC3 2cb0f4eb-fe24-422c-b593-f46a9f70cda4 1fe0c2154843a4313b50c9ff15223e28 {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.chimeric.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.chimeric.gdc_realn.bam 296388281 BAM chimeric harmonized CPTAC3 1546a2f1-4c1c-46e8-af5d-77db2626ba52 95cac5489ddbc2d6a8412df728edfb6a {"aliquot_tag": "ALQ_6b4e10b0", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.genomic.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.genomic.gdc_realn.bam 10466619322 BAM genomic harmonized CPTAC3 2b88edaf-1573-4db7-853c-f252f99dc340 3a99d43d85b83bd55fb785797763afd1 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.RNA-Seq.genomic.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.genomic.gdc_realn.bam 6019043954 BAM genomic harmonized CPTAC3 af70ae99-c234-4ed3-a914-e7bcd908457d 5ef919f48c586c4284eac6e26ea8f29a {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.genomic.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.genomic.gdc_realn.bam 13455538795 BAM genomic harmonized CPTAC3 a93e1421-41fa-432f-a74a-c0ce9ac46c23 1b79c33b60d4e33860ae56fc3185a9a8 {"aliquot_tag": "ALQ_6b4e10b0", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.S13_L006_R1.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R1_001.fastq.gz 2863764169 FASTQ S13_L006_R1 unaligned CPTAC3 c245d3cc-c13b-4994-b900-6245c3e884be 2fc9cc8335b762d15410b50b13929aeb {"aliquot_tag": "ALQ_64efaa3", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.S13_L006_R2.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R2_001.fastq.gz 3033744251 FASTQ S13_L006_R2 unaligned CPTAC3 92811538-48b6-40b2-b1ba-2a103a3df2ce 1a35feabe8c2a8bafd3a5ec691ba3a31 {"aliquot_tag": "ALQ_64efaa3", "sample": "S13", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.S22_L004_R1.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R1_001.fastq.gz 3381706751 FASTQ S22_L004_R1 unaligned CPTAC3 4a048fad-1dbb-459b-a65a-fc8ee83ab8e6 75842975ea7b232240639150eca17540 {"aliquot_tag": "ALQ_4c29e385", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.RNA-Seq.S22_L004_R2.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R2_001.fastq.gz 3624735725 FASTQ S22_L004_R2 unaligned CPTAC3 f18369ea-04a4-40be-9170-fda75c86bf23 57cac5526792bf55f1aed88dab6b4195 {"aliquot_tag": "ALQ_4c29e385", "sample": "S22", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.RNA-Seq.S62_R1.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R1_001.fastq.gz 8382418397 FASTQ S62_R1 unaligned CPTAC3 707bfb28-545e-4216-b52a-d0d46a339a48 9fd29cba26dcc7dbcf0243c1687ab3fa {"aliquot_tag": "ALQ_6b4e10b0", "sample": "S62", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.S62_R2.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R2_001.fastq.gz 8646625499 FASTQ S62_R2 unaligned CPTAC3 753c36a3-366e-495f-82c6-c08d38947b86 5b854d95d85e07b08972c5875ddd2e22 {"aliquot_tag": "ALQ_6b4e10b0", "sample": "S62", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.transcriptome.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.transcriptome.gdc_realn.bam 12347170732 BAM transcriptome harmonized CPTAC3 4da12269-3f3d-4061-b7d5-786c27f32161 8fcbe90a4b7b79661a311defdb256231 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.RNA-Seq.transcriptome.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.transcriptome.gdc_realn.bam 9166232245 BAM transcriptome harmonized CPTAC3 a53ceb32-2c67-4c2c-a854-c4f5050f9dc0 1f0c5bd3ba1d7eb0908c8caf5025f937 {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor"} -C3L-00977.RNA-Seq.transcriptome.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.transcriptome.gdc_realn.bam 8766445937 BAM transcriptome harmonized CPTAC3 fba31566-ad62-4241-b287-860adeee7ec8 9164202b970ec371dea87ebf67d2046f {"aliquot_tag": "ALQ_6b4e10b0", "gdc_sample_type": "Primary Tumor"} -C3L-00977.WGS.N C3L-00977 HNSCC WGS blood_normal CPT0167150002 CPT0167150002.WholeGenome.RP-1303.bam 60919079201 BAM aligned CPTAC3 1cf1c5ec-8888-474a-ab1f-08733b376fd3 a440e488ebfadf32770d809ff7ecb27a {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00977.WGS.N.hg38 C3L-00977 HNSCC WGS blood_normal CPT0167150002 2339475d-cf4f-45bb-adba-cadfb3acca30_wgs_gdc_realn.bam 89539320285 BAM harmonized CPTAC3 dd3fd04d-7f8b-4a9b-a5b6-441eec97d3cb 5cfdcffe609e91997388d1b11ea4d9c4 {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00977.WGS.T C3L-00977 HNSCC WGS tumor CPT0169640006 CPT0169640006.WholeGenome.RP-1303.bam 62239156267 BAM aligned CPTAC3 1d634f27-00ac-4bec-b1fa-1ea4eabb3829 339457a58bf1bf53b58e1fad16d3e2db {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor"} -C3L-00977.WGS.T.hg38 C3L-00977 HNSCC WGS tumor CPT0169640006 c123a154-adec-48b6-923a-9bc5a29d1601_wgs_gdc_realn.bam 92106610656 BAM harmonized CPTAC3 c1a3dd1b-9b37-45fd-a089-b7d05864986e 394388cb6ecaa6f141771785c5732dcb {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor"} -C3L-00977.WXS.A C3L-00977 HNSCC WXS tissue_normal CPT0169650006 CPT0169650006.WholeExome.RP-1303.bam 25810255751 BAM aligned CPTAC3 7e78c2d2-0d1a-482b-bfc8-1145360258d1 3efcba4c8b80da1e5f6d5dbbe3be6a7a {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.WXS.A.hg38 C3L-00977 HNSCC WXS tissue_normal CPT0169650006 55028363-67ad-4c70-91bc-4a69a46cd152_wxs_gdc_realn.bam 35856807669 BAM harmonized CPTAC3 bf4c2a9d-1b3c-48ca-8103-59249a83c40f 16c983007ea085c9e8c0fd56c6e4cf76 {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00977.WXS.N C3L-00977 HNSCC WXS blood_normal CPT0167150002 CPT0167150002.WholeExome.RP-1303.bam 21100378877 BAM aligned CPTAC3 5b82e2d1-19f6-4f13-b61d-aa3e1aa2440b 23ee256119a90f19b1ebb2dfea0509f7 {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00977.WXS.N.hg38 C3L-00977 HNSCC WXS blood_normal CPT0167150002 2339475d-cf4f-45bb-adba-cadfb3acca30_wxs_gdc_realn.bam 28786992198 BAM harmonized CPTAC3 e3e06dc2-dc61-4a68-89f2-aa6dc6f5cdb6 6695475e5af082bee06ee0cdc11fc3e4 {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00977.WXS.T C3L-00977 HNSCC WXS tumor CPT0169640006 CPT0169640006.WholeExome.RP-1303.bam 39044315096 BAM aligned CPTAC3 a3fbc7c5-f81e-405f-b83c-f2dafb93bec2 09949143b9099368e46f59ce0f51e313 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor"} -C3L-00977.WXS.T.hg38 C3L-00977 HNSCC WXS tumor CPT0169640006 c123a154-adec-48b6-923a-9bc5a29d1601_wxs_gdc_realn.bam 54065141888 BAM harmonized CPTAC3 38dfabd0-45ce-4434-80af-0d625e9a0cba 23e5d484d4aa3923d3bc19ae9e479f58 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor"} -C3L-00980.MethArray.Green.A C3L-00980 CCRCC Methylation_Array tissue_normal CPT0122670006 204930640051_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 445e9271-141e-4a87-990c-78dd42c67360 3ba8182f1c62f5c0c0554196d72f7482 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.MethArray.Green.T C3L-00980 CCRCC Methylation_Array tumor CPT0122660009 203219640133_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6a3be711-98ea-4055-94fa-8d63474fc886 d528ac0aac7631dfc7bb5404f7c08ae2 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor"} -C3L-00980.MethArray.Red.A C3L-00980 CCRCC Methylation_Array tissue_normal CPT0122670006 204930640051_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 19d47e14-fc58-4087-8f5f-05e2e8f15a2f c36ffe7076e055ff4702f6adc71d3756 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.MethArray.Red.T C3L-00980 CCRCC Methylation_Array tumor CPT0122660009 203219640133_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 2de39c93-4698-446e-8c75-c90d6a7ff086 bd73d6bfdcd7320ce29bba0e61b4c6a0 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor"} -C3L-00980.miRNA-Seq.A.hg38 C3L-00980 CCRCC miRNA-Seq tissue_normal CPT0122670009 168108b3-17e7-46e2-96fe-faa6052a6b5a_mirnaseq_gdc_realn.bam 187386491 BAM harmonized CPTAC3 04276a67-a665-44eb-8112-f14bbe3eb473 3d756345090a27685bc82ae229c0fa42 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.miRNA-Seq.S21_L002_R1.A C3L-00980 CCRCC miRNA-Seq tissue_normal CPT0122670009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L002_R1_001.unaln.bam 172064311 BAM S21_L002_R1 unaligned CPTAC3 55072446-3d54-451b-9020-bfd96756a8aa ac666873551f74e812eecb1129337914 {"aliquot_tag": "ALQ_c7a3da73", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.miRNA-Seq.S34_L003_R1.T C3L-00980 CCRCC miRNA-Seq tumor CPT0122660006 190108_UNC31-K00269_0176_AHYGLVBBXX_CATGGC_S34_L003_R1_001.unaln.bam 211465288 BAM S34_L003_R1 unaligned CPTAC3 8dbb5ff8-eacb-47b7-af44-11b945762777 63f8afe0ed09a8d0c15cc729755deda0 {"aliquot_tag": "ALQ_6a7cee52", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00980.miRNA-Seq.T.hg38 C3L-00980 CCRCC miRNA-Seq tumor CPT0122660006 2218d3e1-0267-4650-828b-ee8a9ac8689a_mirnaseq_gdc_realn.bam 230926310 BAM harmonized CPTAC3 fd90a5e7-f84f-483c-9caf-cff8dd9fc305 88338f854dbc15bfadfe0b7ccd028a95 {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor"} -C3L-00980.RNA-Seq.chimeric.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.chimeric.gdc_realn.bam 124217789 BAM chimeric harmonized CPTAC3 993c8779-425b-4d08-b211-daaeb4222c3d bff97abaf327d2c116ce8c6e6684aef8 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.RNA-Seq.chimeric.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.chimeric.gdc_realn.bam 34489858 BAM chimeric harmonized CPTAC3 f639bbd5-6d6a-4117-ae39-7b4e3ad31fbd 94c11bf5e1f40471d12c1d8a4d9aeef9 {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor"} -C3L-00980.RNA-Seq.genomic.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.genomic.gdc_realn.bam 9607400096 BAM genomic harmonized CPTAC3 4f007e54-9d2d-4832-a12d-431ab805e66e 261347685580831cb79f3158b774f783 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.RNA-Seq.genomic.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.genomic.gdc_realn.bam 9173298602 BAM genomic harmonized CPTAC3 c000f5f5-e01f-403e-8b5d-2f001a24554b e39717bbc0f9fce4f22e6ff4fc971e3a {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor"} -C3L-00980.RNA-Seq.S21_L008_R1.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R1_001.fastq.gz 3897154563 FASTQ S21_L008_R1 unaligned CPTAC3 5cd302e9-3738-470e-b604-9c8f04952960 1e156989623a03f2ebc49943661345d9 {"aliquot_tag": "ALQ_c7a3da73", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.RNA-Seq.S21_L008_R2.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R2_001.fastq.gz 4383426143 FASTQ S21_L008_R2 unaligned CPTAC3 7cd4aeb6-87df-4a6a-9b5f-b10da78930a6 df32756f263dce4065b606dc8ff55ad3 {"aliquot_tag": "ALQ_c7a3da73", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.RNA-Seq.S6_L002_R1.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4220398038 FASTQ S6_L002_R1 unaligned CPTAC3 dad5c72a-177a-41be-a022-08ae25920b5b e632fd8ccfb615781b0f320d1837ad6a {"aliquot_tag": "ALQ_6a7cee52", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00980.RNA-Seq.S6_L002_R2.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4591618438 FASTQ S6_L002_R2 unaligned CPTAC3 b3f276fe-dc9f-4064-b313-a2699d1556dd d02225402b05a2508b62bd5864a8e04f {"aliquot_tag": "ALQ_6a7cee52", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00980.RNA-Seq.transcriptome.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.transcriptome.gdc_realn.bam 9532588099 BAM transcriptome harmonized CPTAC3 9c5e868c-c22b-47c9-8e63-2a1a798971ab 336e762a5dc1ac9c9dd6417f72312037 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.RNA-Seq.transcriptome.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.transcriptome.gdc_realn.bam 11562950211 BAM transcriptome harmonized CPTAC3 3715a0b7-0a45-4659-9141-121f2a8d66b7 56af81cd3cee38ea3d3cbdb388f5c417 {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor"} -C3L-00980.WGS.A C3L-00980 CCRCC WGS tissue_normal CPT0122670006 CPT0122670006.WholeGenome.RP-1303.bam 51481052168 BAM aligned CPTAC3 296c4494-34b0-4733-8a7a-d74897aa8664 7ae17b00df51ff4c514646efc91ac33a {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.WGS.A.hg38 C3L-00980 CCRCC WGS tissue_normal CPT0122670006 7e05bf2c-1413-4148-abaa-7ead4aaa8419_wgs_gdc_realn.bam 74893150523 BAM harmonized CPTAC3 4e21269a-e2bc-48c5-8cb6-25af9a7872f5 1f6876fa892cdba474f83c6024f10b20 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.WGS.N C3L-00980 CCRCC WGS blood_normal CPT0124660002 CPT0124660002.WholeGenome.RP-1303.bam 53540831918 BAM aligned CPTAC3 a57d308e-c71c-4856-9d5b-656f26b4c609 10aef80848efd1f9ad61f9918d8e7de3 {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal"} -C3L-00980.WGS.N.hg38 C3L-00980 CCRCC WGS blood_normal CPT0124660002 3590cb67-b85f-433b-858b-b0a6a1e22251_wgs_gdc_realn.bam 78218121829 BAM harmonized CPTAC3 5b252611-9dc9-409b-98e1-4da69f0b52a9 0a1b4e97634a471ddb0e402e7c2ce3b6 {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal"} -C3L-00980.WGS.T C3L-00980 CCRCC WGS tumor CPT0122660009 CPT0122660009.WholeGenome.RP-1303.bam 58442128486 BAM aligned CPTAC3 2940aad4-9780-4036-bfd8-363c9fc2dfac 123ee8b02530dc180d642301579bad64 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor"} -C3L-00980.WGS.T.hg38 C3L-00980 CCRCC WGS tumor CPT0122660009 f0b90e6a-aa5b-4137-afab-034bcc3e5eca_wgs_gdc_realn.bam 86146951967 BAM harmonized CPTAC3 116201d6-d812-4eed-a6ee-31c55a8fc6a0 3c338f7f7b6a0bbf8bd564177905a809 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor"} -C3L-00980.WXS.A C3L-00980 CCRCC WXS tissue_normal CPT0122670006 CPT0122670006.WholeExome.RP-1303.bam 20004085076 BAM aligned CPTAC3 03478a71-89d3-4ff7-ab9a-3fa0adab3e37 f1f0a5a33d3328b4c0f9e5d85f1bea24 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.WXS.A.hg38 C3L-00980 CCRCC WXS tissue_normal CPT0122670006 7e05bf2c-1413-4148-abaa-7ead4aaa8419_wxs_gdc_realn.bam 27771555892 BAM harmonized CPTAC3 5812edfe-38be-43ae-b557-084abfa365c2 8dcfb6b16fd543a206f1e7ad063605e2 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00980.WXS.N C3L-00980 CCRCC WXS blood_normal CPT0124660002 CPT0124660002.WholeExome.RP-1303.bam 30002017759 BAM aligned CPTAC3 7f99545d-99f9-4c7d-9003-e47fa3a77900 6cd4f17eedc0e0dc1a3d5d54a585e2cb {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal"} -C3L-00980.WXS.N.hg38 C3L-00980 CCRCC WXS blood_normal CPT0124660002 3590cb67-b85f-433b-858b-b0a6a1e22251_wxs_gdc_realn.bam 41502307993 BAM harmonized CPTAC3 5852753a-c7e1-4445-ae1e-6962f4dc97c3 6a4f71e61cebdf6e700042b776993691 {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal"} -C3L-00980.WXS.T C3L-00980 CCRCC WXS tumor CPT0122660009 CPT0122660009.WholeExome.RP-1303.bam 19353671717 BAM aligned CPTAC3 8ba60fd4-577e-433e-8939-98f863b25be7 6489dea2756df5169b75104f3be3ed82 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor"} -C3L-00980.WXS.T.hg38 C3L-00980 CCRCC WXS tumor CPT0122660009 f0b90e6a-aa5b-4137-afab-034bcc3e5eca_wxs_gdc_realn.bam 26436910114 BAM harmonized CPTAC3 0a44ba6a-01e5-447d-b59e-bc3bc45f401a 3a709fd164dd044072c3700a226bf853 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor"} -C3L-00981.MethArray.Green.A C3L-00981 CCRCC Methylation_Array tissue_normal CPT0122730005 204930640065_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6e53f809-06da-4b54-869c-f0a340ca4c60 ada8ed392456d26c18c75e1064463308 {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.MethArray.Green.T C3L-00981 CCRCC Methylation_Array tumor CPT0122720009 203219670054_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c66ab6a0-dc55-47f5-95c0-dad2ac3446d9 3fbbd034e8a1500a4d40d37bc211056d {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor"} -C3L-00981.MethArray.Red.A C3L-00981 CCRCC Methylation_Array tissue_normal CPT0122730005 204930640065_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 607535fc-8bf5-4e4a-bfce-21f9bd66dec0 8358880f93925d8a9da6125e7915bfda {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.MethArray.Red.T C3L-00981 CCRCC Methylation_Array tumor CPT0122720009 203219670054_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 0a8cd70e-511e-4929-a50b-8da0d0dc9a81 1c7b0d381e7107f9cdb6fc034d3c065e {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor"} -C3L-00981.miRNA-Seq.A.hg38 C3L-00981 CCRCC miRNA-Seq tissue_normal CPT0122730008 c659aa75-e18f-4eba-9cb7-e3cdf58ed5cc_mirnaseq_gdc_realn.bam 250763845 BAM harmonized CPTAC3 2a8637b8-54f4-4f3b-8879-414b901a77f5 bd67f39f06e9080dbd21382faf414330 {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.miRNA-Seq.S25_L002_R1.A C3L-00981 CCRCC miRNA-Seq tissue_normal CPT0122730008 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L002_R1_001.unaln.bam 232340616 BAM S25_L002_R1 unaligned CPTAC3 8068d046-a6b2-40f0-89a9-1a8abe382417 f5c7dbe66c3ca45318f7431e9b52f3f3 {"aliquot_tag": "ALQ_8e789f80", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.miRNA-Seq.S35_L003_R1.T C3L-00981 CCRCC miRNA-Seq tumor CPT0122720006 190108_UNC31-K00269_0176_AHYGLVBBXX_CATTTT_S35_L003_R1_001.unaln.bam 209078400 BAM S35_L003_R1 unaligned CPTAC3 bc622217-25aa-48f4-9829-90d68614aaf3 07ef6213ab4744457ec996116861c2cd {"aliquot_tag": "ALQ_54a09b37", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00981.miRNA-Seq.T.hg38 C3L-00981 CCRCC miRNA-Seq tumor CPT0122720006 63cfaa5b-9db2-4be6-a21e-ce71341cddba_mirnaseq_gdc_realn.bam 222858407 BAM harmonized CPTAC3 52cda274-970f-4ba7-ae48-0652eebb0c3d e9bec1da6cb5425f53077128a211c3eb {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor"} -C3L-00981.RNA-Seq.chimeric.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.chimeric.gdc_realn.bam 132781401 BAM chimeric harmonized CPTAC3 f99aebe3-7921-4cde-8171-1cec61c289d6 0c22b9a6b5866f087566f75ef048fcf9 {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.RNA-Seq.chimeric.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.chimeric.gdc_realn.bam 30424804 BAM chimeric harmonized CPTAC3 8e0c5af0-5f11-4b81-9d97-9d4184577fe6 c04dc3dd003530d6a9c987b820216144 {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor"} -C3L-00981.RNA-Seq.genomic.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.genomic.gdc_realn.bam 11428268122 BAM genomic harmonized CPTAC3 bca92fed-dd71-4183-b37c-62a1251de672 1d34abe35fd22a401017021a0650038a {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.RNA-Seq.genomic.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.genomic.gdc_realn.bam 9589469035 BAM genomic harmonized CPTAC3 e51cbe25-6da2-43f6-900f-be082a7ed2aa 1b499051e039a3ac0c1528154080fcf2 {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor"} -C3L-00981.RNA-Seq.S22_L008_R1.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R1_001.fastq.gz 4007834300 FASTQ S22_L008_R1 unaligned CPTAC3 f8d14556-7d50-49c6-9374-0703df20e889 01fd6a70ddac8cc82b756f52c5281534 {"aliquot_tag": "ALQ_8e789f80", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.RNA-Seq.S22_L008_R2.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R2_001.fastq.gz 4416298272 FASTQ S22_L008_R2 unaligned CPTAC3 414fcc44-18a7-422e-a5a9-23dd315d3684 38e0d7b7214892f04b69f6fed3bb3245 {"aliquot_tag": "ALQ_8e789f80", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.RNA-Seq.S8_L002_R1.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4291633654 FASTQ S8_L002_R1 unaligned CPTAC3 6327b471-3bc6-40e4-bc9a-616f9ab3961c 621b6c236bfc44a55969ddfe0308719d {"aliquot_tag": "ALQ_54a09b37", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00981.RNA-Seq.S8_L002_R2.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4809071727 FASTQ S8_L002_R2 unaligned CPTAC3 7b19eb0c-2d5c-4580-9073-3d5a69e74b4c 57006cfa7a2dbf91cadc5640bd8e139a {"aliquot_tag": "ALQ_54a09b37", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00981.RNA-Seq.transcriptome.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.transcriptome.gdc_realn.bam 8473834516 BAM transcriptome harmonized CPTAC3 e90a37d0-1118-4359-9c18-87e218bda402 801dea9fc6527a6e885a5b7d13792782 {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.RNA-Seq.transcriptome.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.transcriptome.gdc_realn.bam 10668031609 BAM transcriptome harmonized CPTAC3 1fcf84f0-6e32-4189-97bd-824eb0c2b233 735926986f91d3496669542609b8ff30 {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor"} -C3L-00981.WGS.A C3L-00981 CCRCC WGS tissue_normal CPT0122730005 CPT0122730005.WholeGenome.RP-1303.bam 55047052121 BAM aligned CPTAC3 e7dd30ef-612e-45da-acea-917eab9a6588 48420a272a3a8b3e189438b97e605e9a {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.WGS.A.hg38 C3L-00981 CCRCC WGS tissue_normal CPT0122730005 2c0c4eae-a2e7-4de1-a18c-3445e2dac4e1_wgs_gdc_realn.bam 80053245255 BAM harmonized CPTAC3 56701e56-f395-4dec-8f12-b88421351250 0f1ab15eb55561ff0fcd6bcf31799840 {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.WGS.N C3L-00981 CCRCC WGS blood_normal CPT0124680002 CPT0124680002.WholeGenome.RP-1303.bam 52665215353 BAM aligned CPTAC3 9ad4daa3-ea60-48d2-a7f6-cddfe59d94bc aa5f84108a479941f4c9007f670d380f {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal"} -C3L-00981.WGS.N.hg38 C3L-00981 CCRCC WGS blood_normal CPT0124680002 b1629af4-40df-4bc4-baf0-409e073d886f_wgs_gdc_realn.bam 76855046584 BAM harmonized CPTAC3 19007927-e844-41e8-b689-0962e6f9c171 1624d450bf52482658daf389dda6aa4c {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal"} -C3L-00981.WGS.T C3L-00981 CCRCC WGS tumor CPT0122720009 CPT0122720009.WholeGenome.RP-1303.bam 57378867729 BAM aligned CPTAC3 c7ddf096-468f-433e-9b37-7e24790fdaec ffa69a7a498f55c9dc9f195e02bac4cf {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor"} -C3L-00981.WGS.T.hg38 C3L-00981 CCRCC WGS tumor CPT0122720009 3f9b2567-37c5-40aa-b04f-8e2e9057292f_wgs_gdc_realn.bam 83575801850 BAM harmonized CPTAC3 62afb454-c7f5-4ef9-b06f-762c8522301a 4eb3c9a636d38a1e30c7cd083404e53c {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor"} -C3L-00981.WXS.A C3L-00981 CCRCC WXS tissue_normal CPT0122730005 CPT0122730005.WholeExome.RP-1303.bam 25514825241 BAM aligned CPTAC3 e1397312-1454-4af0-a433-1756c3bcbb74 58eb23ea0a0253bbc576614263986a46 {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.WXS.A.hg38 C3L-00981 CCRCC WXS tissue_normal CPT0122730005 2c0c4eae-a2e7-4de1-a18c-3445e2dac4e1_wxs_gdc_realn.bam 35154719239 BAM harmonized CPTAC3 1d6f39fa-4d43-41c1-a60a-908d00af64f1 c800a435cd415bd243ab4f6d360beeae {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00981.WXS.N C3L-00981 CCRCC WXS blood_normal CPT0124680002 CPT0124680002.WholeExome.RP-1303.bam 26818367322 BAM aligned CPTAC3 d4688a68-9418-4063-9027-7c7c2860af51 8f8b1fa56566fe480319758494f568d9 {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal"} -C3L-00981.WXS.N.hg38 C3L-00981 CCRCC WXS blood_normal CPT0124680002 b1629af4-40df-4bc4-baf0-409e073d886f_wxs_gdc_realn.bam 36963053347 BAM harmonized CPTAC3 dc4a66ef-32ec-42a5-b889-9392e80f7aea 3cd3bda456949a4332548b4a2456f617 {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal"} -C3L-00981.WXS.T C3L-00981 CCRCC WXS tumor CPT0122720009 CPT0122720009.WholeExome.RP-1303.bam 40348258261 BAM aligned CPTAC3 e9f236e1-c4a7-4c35-a321-0c7d2796c33e 953825c08d6e635f5abab9e2ca6b2b67 {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor"} -C3L-00981.WXS.T.hg38 C3L-00981 CCRCC WXS tumor CPT0122720009 3f9b2567-37c5-40aa-b04f-8e2e9057292f_wxs_gdc_realn.bam 56661316031 BAM harmonized CPTAC3 152873b4-a322-402c-8cb1-07d1d2f8d034 65a96e18c893504e8090765860fa607d {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor"} -C3L-00982.MethArray.Green.A C3L-00982 CCRCC Methylation_Array tissue_normal CPT0126920006 204373100047_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 775aca0c-977f-4d1e-99e9-01187017be3b 59f69ba3789e4815647da284033401e3 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.MethArray.Green.T C3L-00982 CCRCC Methylation_Array tumor CPT0124160006 203219650005_R04C01_Grn.idat 13676225 IDAT Green NA CPTAC3 65dc8be5-c0af-4742-b1d6-08bafa470332 7858a575a1ef7967fb295bdb0cb1a8a1 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor"} -C3L-00982.MethArray.Red.A C3L-00982 CCRCC Methylation_Array tissue_normal CPT0126920006 204373100047_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 0bd50225-c999-4d98-9572-c24b07889665 6cb40a2f801a1991840b82d57b25f84f {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.MethArray.Red.T C3L-00982 CCRCC Methylation_Array tumor CPT0124160006 203219650005_R04C01_Red.idat 13676225 IDAT Red NA CPTAC3 cd5520ca-c5d2-4d81-9ea1-eef0b5be8c03 4042199cdb100c4ede66685d57638d17 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor"} -C3L-00982.miRNA-Seq.A.hg38 C3L-00982 CCRCC miRNA-Seq tissue_normal CPT0126920009 68fe19aa-9f42-458e-b414-560ee02dfe4b_mirnaseq_gdc_realn.bam 191881013 BAM harmonized CPTAC3 6ea1add4-5023-4c72-86e9-b47209878868 49da40aaa653c11d6a19e32df721b965 {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.miRNA-Seq.S14_L004_R1.T C3L-00982 CCRCC miRNA-Seq tumor CPT0124160009 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTTCC_S14_L004_R1_001.unaln.bam 266325487 BAM S14_L004_R1 unaligned CPTAC3 b8f6b883-26e0-4869-b58d-f4204e5fb9e3 8faddb2e101a2a9080ed58c05a51924d {"aliquot_tag": "ALQ_8416f641", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00982.miRNA-Seq.S29_L003_R1.A C3L-00982 CCRCC miRNA-Seq tissue_normal CPT0126920009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L003_R1_001.unaln.bam 174408096 BAM S29_L003_R1 unaligned CPTAC3 63685cdb-8f84-4caf-9c2d-fe1c58e12be6 ebc6d4e2255721be860106c6de878a6c {"aliquot_tag": "ALQ_a5ac3c5", "sample": "S29", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.miRNA-Seq.T.hg38 C3L-00982 CCRCC miRNA-Seq tumor CPT0124160009 589f51f3-65d8-4a7e-8e2d-4c66174293cb_mirnaseq_gdc_realn.bam 289429534 BAM harmonized CPTAC3 a55a1b90-dcf9-4f53-84a3-562380a22aa3 1e94ea4e56d8c070b05ee33f610fe962 {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor"} -C3L-00982.RNA-Seq.chimeric.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.chimeric.gdc_realn.bam 130625464 BAM chimeric harmonized CPTAC3 1d0180a3-55b2-4048-9651-733aaabdeed1 0d0107d437cae9d8cbbe7acdb39aa76d {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.RNA-Seq.chimeric.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.chimeric.gdc_realn.bam 46879905 BAM chimeric harmonized CPTAC3 404b41ef-217d-4782-aa5f-efa76c7623bb 101da4dacd67fcfdb36d7518584b005e {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor"} -C3L-00982.RNA-Seq.genomic.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.genomic.gdc_realn.bam 9146962599 BAM genomic harmonized CPTAC3 6b4153d3-2efc-4a51-a9e2-c496fe028eda 28c69de8019d69725f36ea2b1b3f1e9f {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.RNA-Seq.genomic.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.genomic.gdc_realn.bam 10645538607 BAM genomic harmonized CPTAC3 d7061043-5b89-4a80-91d7-de59e806cd67 4c3e81460e530076ed45e9f4dce3bf04 {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor"} -C3L-00982.RNA-Seq.S10_L004_R1.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R1_001.fastq.gz 4528048033 FASTQ S10_L004_R1 unaligned CPTAC3 e10d235c-59e2-4665-91d7-37b2e882385c a6d8553da3a838c4408f5d4d4be6c785 {"aliquot_tag": "ALQ_8416f641", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00982.RNA-Seq.S10_L004_R2.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R2_001.fastq.gz 4922189461 FASTQ S10_L004_R2 unaligned CPTAC3 51b9b038-236c-42f8-a09f-4d447dbdf7c3 184ff57769c6ee959a9f5a4f719ba081 {"aliquot_tag": "ALQ_8416f641", "sample": "S10", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00982.RNA-Seq.S9_L005_R1.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R1_001.fastq.gz 4161300881 FASTQ S9_L005_R1 unaligned CPTAC3 cc3f49ba-2f48-40ef-ad20-6bed1d96942f c348fb2bb1189d01e5f93bb42e456c2b {"aliquot_tag": "ALQ_a5ac3c5", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.RNA-Seq.S9_L005_R2.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R2_001.fastq.gz 4332346638 FASTQ S9_L005_R2 unaligned CPTAC3 c22b6562-57d3-4cdb-b4d1-6ae71d4bc48d f567fa5a355a98e801f14cf14816abaa {"aliquot_tag": "ALQ_a5ac3c5", "sample": "S9", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.RNA-Seq.transcriptome.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.transcriptome.gdc_realn.bam 10816873856 BAM transcriptome harmonized CPTAC3 b40d4b25-1554-4f04-9a0e-4993eef39fef 7fd5a4a5dd4b333065aa5ad824d8fd1d {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.RNA-Seq.transcriptome.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.transcriptome.gdc_realn.bam 12281404272 BAM transcriptome harmonized CPTAC3 4cd43330-e55f-4d4e-b1ad-de36eb29e9c4 b5d169f9370ad9c2390fbc024c48e343 {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor"} -C3L-00982.WGS.A C3L-00982 CCRCC WGS tissue_normal CPT0126920006 CPT0126920006.WholeGenome.RP-1303.bam 60546605674 BAM aligned CPTAC3 ea7bc515-b171-47bd-8790-85f63ded1798 784f95caff10ead628652f02b45e5dd8 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.WGS.A.hg38 C3L-00982 CCRCC WGS tissue_normal CPT0126920006 0340c8df-bdc2-48fe-8415-056a4dc10d4f_wgs_gdc_realn.bam 88845324612 BAM harmonized CPTAC3 d91cb755-8625-4324-9779-408c49da2978 67d7b902409a6c15940da8f6c181befa {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.WGS.N C3L-00982 CCRCC WGS blood_normal CPT0128480002 CPT0128480002.WholeGenome.RP-1303.bam 53329214688 BAM aligned CPTAC3 c96c3bf2-5a11-424a-90ee-1f70083487dd ca56656c9ae9a446715857a99fedf8a4 {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00982.WGS.N.hg38 C3L-00982 CCRCC WGS blood_normal CPT0128480002 cd93f6a7-0847-467e-8b11-a57e13f24e89_wgs_gdc_realn.bam 76660803578 BAM harmonized CPTAC3 60d362c8-e216-4de2-b2f2-2dcfc9d3bf5a 82e877bdcc2d488597f7a55390e6fc8c {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00982.WGS.T C3L-00982 CCRCC WGS tumor CPT0124160006 CPT0124160006.WholeGenome.RP-1303.bam 54344381877 BAM aligned CPTAC3 ddf5218f-410b-4753-80d4-c6f82adc1d10 b4832a50a4e65355e4b9ec662b78d3a9 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor"} -C3L-00982.WGS.T.hg38 C3L-00982 CCRCC WGS tumor CPT0124160006 978a7840-abc1-46bb-bacc-a094faafd7d4_wgs_gdc_realn.bam 78975085369 BAM harmonized CPTAC3 b613648a-5dc2-4833-bd02-3bf7111ba5bd 98f4b94b00dcaf40b2125be06906f6df {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor"} -C3L-00982.WXS.A C3L-00982 CCRCC WXS tissue_normal CPT0126920006 CPT0126920006.WholeExome.RP-1303.bam 26692872449 BAM aligned CPTAC3 0138797c-368e-432d-acff-fb8abb20a692 cd896ec2439d68472299137c5a663478 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.WXS.A.hg38 C3L-00982 CCRCC WXS tissue_normal CPT0126920006 0340c8df-bdc2-48fe-8415-056a4dc10d4f_wxs_gdc_realn.bam 36856451042 BAM harmonized CPTAC3 58705889-61fe-492d-8e0e-ae36335feb27 ac1170a72ed598a4afbf64ff13a600f1 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00982.WXS.N C3L-00982 CCRCC WXS blood_normal CPT0128480002 CPT0128480002.WholeExome.RP-1303.bam 26330901421 BAM aligned CPTAC3 3904d3e9-53aa-4be8-a181-6ff96d8191f4 886e325045ae01ab93e07c928527ca31 {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00982.WXS.N.hg38 C3L-00982 CCRCC WXS blood_normal CPT0128480002 cd93f6a7-0847-467e-8b11-a57e13f24e89_wxs_gdc_realn.bam 36930833440 BAM harmonized CPTAC3 9d65cd34-ee64-40f4-a90e-2bd0c1c4e9cc a5314dfa471f74cc8df1be3cd8dcd3ba {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00982.WXS.T C3L-00982 CCRCC WXS tumor CPT0124160006 CPT0124160006.WholeExome.RP-1303.bam 26949361644 BAM aligned CPTAC3 91ef683c-ca7a-4d60-8a7a-8ff51bba87e2 42f67c4732551e62a417961b7724c5b1 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor"} -C3L-00982.WXS.T.hg38 C3L-00982 CCRCC WXS tumor CPT0124160006 978a7840-abc1-46bb-bacc-a094faafd7d4_wxs_gdc_realn.bam 37474641163 BAM harmonized CPTAC3 4d885d06-e088-438b-a5f1-07562763bc13 30b3decc995a9428c50476e58eb8da71 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor"} -C3L-00987.MethArray.Green.T C3L-00987 HNSCC Methylation_Array tumor CPT0127050006 203219650047_R02C01_Grn.idat 13676207 IDAT Green NA CPTAC3 b0e6f1b9-7bd2-4ae4-941d-bb2ea1b2fecf 4bdc798b5b072a6c95101e0e10f91583 {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor"} -C3L-00987.MethArray.Red.T C3L-00987 HNSCC Methylation_Array tumor CPT0127050006 203219650047_R02C01_Red.idat 13676207 IDAT Red NA CPTAC3 cb42655d-731e-4175-b2d8-f392de515b03 08780de191b6ad5c8b4029566241b64c {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor"} -C3L-00987.miRNA-Seq.S6_L001_R1.T C3L-00987 HNSCC miRNA-Seq tumor CPT0127050009 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L001_R1_001.unaln.bam 260071189 BAM S6_L001_R1 unaligned CPTAC3 0fbb8f21-fb34-4299-a384-6e41a0f7e9a7 02a28c02a1c6ac834d13c0b9250da671 {"aliquot_tag": "ALQ_390245a9", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00987.miRNA-Seq.T.hg38 C3L-00987 HNSCC miRNA-Seq tumor CPT0127050009 62114f12-269e-4bba-9f39-95746b6fd550_mirnaseq_gdc_realn.bam 285804174 BAM harmonized CPTAC3 5b9b8f8b-e58e-4512-a33d-e7d240244506 c53cd941403953324d78513b0bf294fb {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.chimeric.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.chimeric.gdc_realn.bam 296619401 BAM chimeric harmonized CPTAC3 9de51fc5-1ace-4e5c-94d1-3c8d539df983 620591d7fb41589606853671740f1007 {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.chimeric.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.chimeric.gdc_realn.bam 193987319 BAM chimeric harmonized CPTAC3 0fa9b8cd-d024-4e33-b4da-6776ffb77d0a b1f497c5c5a2f5d2328fc1e0fa1b2d46 {"aliquot_tag": "ALQ_e59e2f7f", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.genomic.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.genomic.gdc_realn.bam 8697626433 BAM genomic harmonized CPTAC3 eef95d52-f97b-412b-9dc7-ad876edb7f89 52e1f2097d50dcc9927fdd98ccaf1434 {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.genomic.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.genomic.gdc_realn.bam 10427410648 BAM genomic harmonized CPTAC3 7722501e-ecce-4afc-8b78-76bc8144d1a4 c56391a3f67a2564ee36e485c34eb780 {"aliquot_tag": "ALQ_e59e2f7f", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.S63_R1.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R1_001.fastq.gz 6763131204 FASTQ S63_R1 unaligned CPTAC3 0afb49f7-b185-4364-83e8-8dd278265bb6 a171659dbcfbf46ddc8e16ae7b74fc36 {"aliquot_tag": "ALQ_e59e2f7f", "sample": "S63", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.S63_R2.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R2_001.fastq.gz 6946642256 FASTQ S63_R2 unaligned CPTAC3 7d16f3ea-2079-49c1-9522-e17e6edfc217 0c378ae5299b8caef9e7584e271256c2 {"aliquot_tag": "ALQ_e59e2f7f", "sample": "S63", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.S6_L002_R1.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4130454898 FASTQ S6_L002_R1 unaligned CPTAC3 20884bd2-15d1-4e47-8c38-797daa6c002b c374929b934ed298dfa09153d089eae2 {"aliquot_tag": "ALQ_390245a9", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.S6_L002_R2.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4567521275 FASTQ S6_L002_R2 unaligned CPTAC3 85b3c3d8-903d-463d-94bf-0443bae53c57 8fa5abf9bbe7232b146062c981f87afe {"aliquot_tag": "ALQ_390245a9", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.transcriptome.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.transcriptome.gdc_realn.bam 11064885083 BAM transcriptome harmonized CPTAC3 18e0c4c2-f24d-4583-993b-6c52db9e85be 230cd9463db7a43aadb4d7fbc27a60d0 {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor"} -C3L-00987.RNA-Seq.transcriptome.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.transcriptome.gdc_realn.bam 6330216976 BAM transcriptome harmonized CPTAC3 896a6653-5e9f-4a74-a7a1-4dbcd3f62522 19e9b59f9fba47a02dd1b371e6b8fe17 {"aliquot_tag": "ALQ_e59e2f7f", "gdc_sample_type": "Primary Tumor"} -C3L-00987.WGS.N C3L-00987 HNSCC WGS blood_normal CPT0128500002 CPT0128500002.WholeGenome.RP-1303.bam 75967541992 BAM aligned CPTAC3 e46e023c-8f43-4435-94f2-39d8d1fb3a0d 754073ad55667e6c37b3c553374a8778 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00987.WGS.N.hg38 C3L-00987 HNSCC WGS blood_normal CPT0128500002 3dcd0253-ff02-4908-b27c-128e54c93560_wgs_gdc_realn.bam 112696502067 BAM harmonized CPTAC3 8f414a09-7ec3-4247-a058-0ec60a8bad7f db12501c2173ac071d4d8cf5b20fbc52 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00987.WGS.T C3L-00987 HNSCC WGS tumor CPT0127050006 CPT0127050006.WholeGenome.RP-1303.bam 60978252350 BAM aligned CPTAC3 90f03ea3-b2bd-4053-aab7-48cf5199e3bf afc3f5d9f0bc7d4dedc138a6736c3b04 {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor"} -C3L-00987.WGS.T.hg38 C3L-00987 HNSCC WGS tumor CPT0127050006 eb51741c-873e-42b7-98a1-79136ea048eb_wgs_gdc_realn.bam 89844587112 BAM harmonized CPTAC3 8aa4b17f-c0f0-4c56-828a-7226b253d483 2955c6f6a3cc072ead0119691d8bbeb3 {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor"} -C3L-00987.WXS.N C3L-00987 HNSCC WXS blood_normal CPT0128500002 CPT0128500002.WholeExome.RP-1303.bam 43059580348 BAM aligned CPTAC3 215e7a38-371d-4bc7-8d5f-9ebdc9e925e6 cf425b70eeb792da9321ca827d803944 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00987.WXS.N.hg38 C3L-00987 HNSCC WXS blood_normal CPT0128500002 3dcd0253-ff02-4908-b27c-128e54c93560_wxs_gdc_realn.bam 59934678432 BAM harmonized CPTAC3 69927b12-f3d1-44d7-a4fe-4e1105cdac23 68ee17686267d946611526456be307c9 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal"} -C3L-00987.WXS.T C3L-00987 HNSCC WXS tumor CPT0127050006 CPT0127050006.WholeExome.RP-1303.bam 22898854690 BAM aligned CPTAC3 a9481942-2d76-49d4-8068-98f2bae38cfa fe4e343a442518a519bcb901b0a8283e {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor"} -C3L-00987.WXS.T.hg38 C3L-00987 HNSCC WXS tumor CPT0127050006 eb51741c-873e-42b7-98a1-79136ea048eb_wxs_gdc_realn.bam 31616417280 BAM harmonized CPTAC3 f3505d85-c1c5-417f-b519-7be074af6657 e60cbc524e7db36da85fa50ad3c7464f {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor"} -C3L-00991.MethArray.Green.A C3L-00991 CCRCC Methylation_Array tissue_normal CPT0123030006 204930640122_R08C01_Grn.idat 13677965 IDAT Green NA CPTAC3 562edd46-4d7e-49fe-9c9b-76db95b72d28 8170d4463d074a7b8e55c2415122c8d0 {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.MethArray.Green.T C3L-00991 CCRCC Methylation_Array tumor CPT0122990009 203219650174_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b20f069a-a02f-4de8-a009-6a81b3192967 9f1bcb9ca2699ce2962c8af2a724d6e7 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor"} -C3L-00991.MethArray.Red.A C3L-00991 CCRCC Methylation_Array tissue_normal CPT0123030006 204930640122_R08C01_Red.idat 13677965 IDAT Red NA CPTAC3 3e21cad3-46c4-4e30-b09c-3a914acb7ead 54323a405c5ee78990d81cf72603550d {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.MethArray.Red.T C3L-00991 CCRCC Methylation_Array tumor CPT0122990009 203219650174_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 b2351dea-f061-4642-9db0-ec9dc280e452 0bae70807f1828ba1e606d25d5c9dcb9 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor"} -C3L-00991.miRNA-Seq.A.hg38 C3L-00991 CCRCC miRNA-Seq tissue_normal CPT0123030009 ec90ac3c-7a32-4480-8393-b446c32f01ad_mirnaseq_gdc_realn.bam 239198742 BAM harmonized CPTAC3 4d706cfc-b101-4277-a20a-217009768348 f687a956442fc680c12b89407d583282 {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.miRNA-Seq.S26_L002_R1.A C3L-00991 CCRCC miRNA-Seq tissue_normal CPT0123030009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L002_R1_001.unaln.bam 219281923 BAM S26_L002_R1 unaligned CPTAC3 24edf11e-9854-43a5-9ac8-2e7f313b2198 3ff0d322038eabe15f5d0b16e6b41346 {"aliquot_tag": "ALQ_420d941a", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.miRNA-Seq.S36_L003_R1.T C3L-00991 CCRCC miRNA-Seq tumor CPT0122990006 190108_UNC31-K00269_0176_AHYGLVBBXX_CCAACA_S36_L003_R1_001.unaln.bam 260086874 BAM S36_L003_R1 unaligned CPTAC3 bc6e200a-529b-40b7-a608-ae912254e0fb fd47694cfec1892bda667783e398a228 {"aliquot_tag": "ALQ_197acb56", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00991.miRNA-Seq.T.hg38 C3L-00991 CCRCC miRNA-Seq tumor CPT0122990006 d837bccb-3af6-4351-91e1-8762f2a03cff_mirnaseq_gdc_realn.bam 282861768 BAM harmonized CPTAC3 d4e8bcfd-03ca-4bae-a0eb-5ef9b81b505e 4a59736d55bb7f0d51f577094c04f5dc {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor"} -C3L-00991.RNA-Seq.chimeric.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.chimeric.gdc_realn.bam 89337729 BAM chimeric harmonized CPTAC3 75389fc1-8934-4fc9-be90-297aa03da8d4 4117b01d19eaa0b654df11eefc0255f7 {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.RNA-Seq.chimeric.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.chimeric.gdc_realn.bam 28854809 BAM chimeric harmonized CPTAC3 39e40bf8-34a6-433b-9c26-a84f683f8eda a94d62d60fcb6c7912be342085544635 {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor"} -C3L-00991.RNA-Seq.genomic.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.genomic.gdc_realn.bam 8679998034 BAM genomic harmonized CPTAC3 449daecd-4a76-4af7-adc7-f1e22964de70 f65928e2553ef996dfc3d15a5cec1cd5 {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.RNA-Seq.genomic.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.genomic.gdc_realn.bam 8299406564 BAM genomic harmonized CPTAC3 b269464f-cecf-4825-8d41-18e793d874ab c67004f8243ea1689824981970e187bb {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor"} -C3L-00991.RNA-Seq.S23_L008_R1.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R1_001.fastq.gz 3591976132 FASTQ S23_L008_R1 unaligned CPTAC3 549226f6-346a-4c61-b085-5d74c4622f80 6bca4d32d1ccab451642d1435ec6468f {"aliquot_tag": "ALQ_420d941a", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.RNA-Seq.S23_L008_R2.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R2_001.fastq.gz 3959759959 FASTQ S23_L008_R2 unaligned CPTAC3 eda73d8e-4803-4257-87c9-184b83c50146 08fee1810eeec07b3227098282726a15 {"aliquot_tag": "ALQ_420d941a", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.RNA-Seq.S7_L002_R1.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 3858780381 FASTQ S7_L002_R1 unaligned CPTAC3 39d58648-1c5a-4633-8a93-db1ca405a8ad 4f25c17760159304d766cfc6ed26f398 {"aliquot_tag": "ALQ_197acb56", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00991.RNA-Seq.S7_L002_R2.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 4187342036 FASTQ S7_L002_R2 unaligned CPTAC3 e67c30fb-f01c-48c7-9e96-9d57d6cd4080 92873608b4c85be3f5f5080ec19efc00 {"aliquot_tag": "ALQ_197acb56", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00991.RNA-Seq.transcriptome.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.transcriptome.gdc_realn.bam 9708481350 BAM transcriptome harmonized CPTAC3 e47f9176-5fc4-48a6-aaa9-bf9c63ae6729 cc7828a84d1bd9f5e2616e9f8a8ea9cd {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.RNA-Seq.transcriptome.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.transcriptome.gdc_realn.bam 10886684443 BAM transcriptome harmonized CPTAC3 5c3b50c2-5280-41c4-b938-13c25a4e59b6 0d27ed4281a3d00119a47a6595bd5cec {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor"} -C3L-00991.WGS.A C3L-00991 CCRCC WGS tissue_normal CPT0123030006 CPT0123030006.WholeGenome.RP-1303.bam 55842017460 BAM aligned CPTAC3 eb3a2ba7-79ea-4def-b470-b46a57286fff 605e297c16f529f82a4e0e5f1371bce0 {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.WGS.A.hg38 C3L-00991 CCRCC WGS tissue_normal CPT0123030006 ec283004-af44-4c9e-a7dd-b612be07284b_wgs_gdc_realn.bam 82372480584 BAM harmonized CPTAC3 cf49c113-1eb3-460c-b6a0-2589250bcb81 7230215b4cbed86168689c162ae74f1d {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.WGS.N C3L-00991 CCRCC WGS blood_normal CPT0124740002 CPT0124740002.WholeGenome.RP-1303.bam 66166571178 BAM aligned CPTAC3 c09e75ff-f8f9-4255-8456-3a3f0f5cc736 f5e534dd32b101b220ce09b0180e25bd {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00991.WGS.N.hg38 C3L-00991 CCRCC WGS blood_normal CPT0124740002 8dc92f70-9830-4d9d-8e77-288406b2abee_wgs_gdc_realn.bam 94992767464 BAM harmonized CPTAC3 09a1599a-a1ba-4578-8bf9-9cfb1ad63679 bf41f27227bfd759c75efb53834dd86a {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00991.WGS.T C3L-00991 CCRCC WGS tumor CPT0122990009 CPT0122990009.WholeGenome.RP-1303.bam 63736921351 BAM aligned CPTAC3 47df8a69-641c-4e02-bf18-4acb9d6111e0 dcbfb75a70c651b2c3f4eac82c2d9554 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor"} -C3L-00991.WGS.T.hg38 C3L-00991 CCRCC WGS tumor CPT0122990009 bbfd62a1-2f6a-41f0-a8c6-015b6132e2c2_wgs_gdc_realn.bam 93295082003 BAM harmonized CPTAC3 f3cfdb11-a523-4cdb-a060-e18f80a42e0c 1954f723f062d949c08153a08d0f8184 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor"} -C3L-00991.WXS.A C3L-00991 CCRCC WXS tissue_normal CPT0123030006 CPT0123030006.WholeExome.RP-1303.bam 19041451147 BAM aligned CPTAC3 914ce933-d67a-4653-bb22-10ed8abaee12 08d7f055ad75d912f962ddab2e010b7d {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.WXS.A.hg38 C3L-00991 CCRCC WXS tissue_normal CPT0123030006 ec283004-af44-4c9e-a7dd-b612be07284b_wxs_gdc_realn.bam 27275807458 BAM harmonized CPTAC3 b9001265-a3b9-4ce3-b0f1-a39da2142783 112486d25c746d42965cbe7bbe8a8d67 {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00991.WXS.N C3L-00991 CCRCC WXS blood_normal CPT0124740002 CPT0124740002.WholeExome.RP-1303.bam 23668181045 BAM aligned CPTAC3 db18b725-374e-4a05-a0de-8d642c2d06c2 5fa6136a50e9e50b1718452220987c68 {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00991.WXS.N.hg38 C3L-00991 CCRCC WXS blood_normal CPT0124740002 8dc92f70-9830-4d9d-8e77-288406b2abee_wxs_gdc_realn.bam 32469409236 BAM harmonized CPTAC3 ab6f1c7f-d40f-4d65-9842-9328dff1ed0e 1b70f1abd571befb53a6b67d1dfdbff5 {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00991.WXS.T C3L-00991 CCRCC WXS tumor CPT0122990009 CPT0122990009.WholeExome.RP-1303.bam 26588890894 BAM aligned CPTAC3 ba8b9366-48e3-4b49-ad49-e63c28f9b4a7 2e2b1b8472aa6316608b8b4b4b83724f {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor"} -C3L-00991.WXS.T.hg38 C3L-00991 CCRCC WXS tumor CPT0122990009 bbfd62a1-2f6a-41f0-a8c6-015b6132e2c2_wxs_gdc_realn.bam 36458132374 BAM harmonized CPTAC3 37800cf7-2080-446f-b4a4-c97fb5987f72 5fd1b7481d53bd1e18b9fe2006528a8e {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor"} -C3L-00993.MethArray.Green.A C3L-00993 LSCC Methylation_Array tissue_normal CPT0102840006 203219670180_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5e81c0c2-3b88-44f0-b35e-52b40bd2fc47 8334710c9d8735602427275dbe67934b {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.MethArray.Green.T C3L-00993 LSCC Methylation_Array tumor CPT0102790009 202234370093_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 43e44a0a-7a10-4d53-adde-a6c41ce88ce8 a6ddf3a9f66a711ba16300fdf97cedd5 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor"} -C3L-00993.MethArray.Red.A C3L-00993 LSCC Methylation_Array tissue_normal CPT0102840006 203219670180_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 0fab6ab4-f949-47da-9f7a-1cd13f4f3c65 a55de677671485ab7389a4a3f557be4f {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.MethArray.Red.T C3L-00993 LSCC Methylation_Array tumor CPT0102790009 202234370093_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 7b4a0c5a-412a-488c-930b-d625fb7c40d5 a83fa92aac6f96da9f69df6681cfb8a7 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor"} -C3L-00993.miRNA-Seq.A.hg38 C3L-00993 LSCC miRNA-Seq tissue_normal CPT0102840009 650c8c92-99e0-4002-97a4-6d287e02493e_mirnaseq_gdc_realn.bam 218940587 BAM harmonized CPTAC3 4464affe-f5c8-429a-a47c-a78fd7a4f87b 1aee49ac0be7ca56081d57125311d33a {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.miRNA-Seq.S33_L002_R1.T C3L-00993 LSCC miRNA-Seq tumor CPT0102790006 181113_UNC31-K00269_0164_AH23NNBBXY_GATCAG_S33_L002_R1_001.unaln.bam 182453994 BAM S33_L002_R1 unaligned CPTAC3 12945339-8808-4936-b250-276d834653a7 55ee2e91e042776a19e7dcf54c9c5666 {"aliquot_tag": "ALQ_6155ad5b", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00993.miRNA-Seq.S45_L006_R1.A C3L-00993 LSCC miRNA-Seq tissue_normal CPT0102840009 181113_UNC31-K00269_0164_AH23NNBBXY_GTTTCG_S45_L006_R1_001.unaln.bam 197105625 BAM S45_L006_R1 unaligned CPTAC3 e107e5b3-108f-4e6e-ae1e-a9b3772aab18 b6bc51e32fca29fcd0cb8ec7c9b2ea42 {"aliquot_tag": "ALQ_f82cc6ae", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.miRNA-Seq.T.hg38 C3L-00993 LSCC miRNA-Seq tumor CPT0102790006 c9bb1cb0-b7d4-4d7e-af14-df2a429ada87_mirnaseq_gdc_realn.bam 202991666 BAM harmonized CPTAC3 4b1aae6a-2c5f-4f68-8bb1-46486625fce2 75424d08bdd82c2049ba64eba230aeb7 {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor"} -C3L-00993.RNA-Seq.chimeric.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.chimeric.gdc_realn.bam 35525076 BAM chimeric harmonized CPTAC3 c6d46788-d48c-4607-be4e-67f3dec07f69 b59f0d92c06d8f3e493c7ef2629423fd {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.RNA-Seq.chimeric.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.chimeric.gdc_realn.bam 37687079 BAM chimeric harmonized CPTAC3 7aac7099-fedf-48e4-b686-8eeb8539fa76 87eadd49282b56b10a00ae0679f47b8d {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor"} -C3L-00993.RNA-Seq.genomic.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.genomic.gdc_realn.bam 9079085742 BAM genomic harmonized CPTAC3 df3b7c54-052d-4a18-91ff-3365e54bf533 f1023d32324824df1770e111372f4c04 {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.RNA-Seq.genomic.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.genomic.gdc_realn.bam 9204798768 BAM genomic harmonized CPTAC3 2de6a69b-c230-42bd-af91-befe2bfcdfd4 00a28fa922072aadcb0c24e082b51b83 {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor"} -C3L-00993.RNA-Seq.S5_L002_R1.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3706316344 FASTQ S5_L002_R1 unaligned CPTAC3 637b3574-f585-443c-b572-ed4666ea9cd0 5a724cf8f18e1b66e1eddbe07a3cd99b {"aliquot_tag": "ALQ_f82cc6ae", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.RNA-Seq.S5_L002_R2.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4169140451 FASTQ S5_L002_R2 unaligned CPTAC3 b9971ca9-1778-4bef-8cee-f8bf3ac70d3f 13e9812e6f73a6f1cd1f19ea9b5cb82d {"aliquot_tag": "ALQ_f82cc6ae", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.RNA-Seq.S7_L002_R1.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4197150006 FASTQ S7_L002_R1 unaligned CPTAC3 e494363c-c751-4544-a3de-9c0312e0c932 b46b822aadd3c3318ae9cdc54f690704 {"aliquot_tag": "ALQ_6155ad5b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00993.RNA-Seq.S7_L002_R2.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4629977018 FASTQ S7_L002_R2 unaligned CPTAC3 b0317768-74e0-455b-9a99-694fda26d085 2a6cdee89b7462705c553b3f8f33f8ea {"aliquot_tag": "ALQ_6155ad5b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00993.RNA-Seq.transcriptome.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.transcriptome.gdc_realn.bam 10480542526 BAM transcriptome harmonized CPTAC3 c0640328-71cb-41b0-95ab-76cc4e8abf0e 909105a1630fac087e88ac51c9e85d77 {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.RNA-Seq.transcriptome.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.transcriptome.gdc_realn.bam 12574905571 BAM transcriptome harmonized CPTAC3 9f811fda-fd08-44d0-89f2-40e808054b86 04d89d7e06388984a2eabccc53812b7d {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor"} -C3L-00993.WGS.A C3L-00993 LSCC WGS tissue_normal CPT0102840006 CPT0102840006.WholeGenome.RP-1303.bam 61579664372 BAM aligned CPTAC3 cc337913-ce02-4643-930e-c535498c308f 1b7a3105e362c16d83979f33bfa75652 {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.WGS.A.hg38 C3L-00993 LSCC WGS tissue_normal CPT0102840006 9d07d0b9-db86-441c-996a-990a6389901b_wgs_gdc_realn.bam 89148307376 BAM harmonized CPTAC3 7c6178b4-86dc-4293-9fbd-54a318af355a 2a0a547afa01467d596c23050695c0eb {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.WGS.N C3L-00993 LSCC WGS blood_normal CPT0101090002 CPT0101090002.WholeGenome.RP-1303.bam 59203209015 BAM aligned CPTAC3 5a7445d6-8aee-4461-aae9-4bfca6dc37e3 af70b7f1303cfead49ba64a4b98d7340 {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal"} -C3L-00993.WGS.N.hg38 C3L-00993 LSCC WGS blood_normal CPT0101090002 3a95c365-c7ec-44e1-88cf-1a5a9711d928_wgs_gdc_realn.bam 87027263680 BAM harmonized CPTAC3 6d7b2df0-5008-4cef-922e-58fa9be16ba8 a0c6890c034b55bf1ef36bf9b73eec1e {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal"} -C3L-00993.WGS.T C3L-00993 LSCC WGS tumor CPT0102790009 CPT0102790009.WholeGenome.RP-1303.bam 65098328039 BAM aligned CPTAC3 6f930eb6-ec95-4b35-b7dd-eb27755ed3dd 9c36cb52561f65714a49cbb801c7a7e1 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor"} -C3L-00993.WGS.T.hg38 C3L-00993 LSCC WGS tumor CPT0102790009 a6c3d626-63a7-41ce-9c86-7bb0d30a71b6_wgs_gdc_realn.bam 94828036229 BAM harmonized CPTAC3 552fe02d-6fc3-4253-a4bf-8f3bbf62e6a0 042d5dcb7e9f706175b2f9c71e40d94c {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor"} -C3L-00993.WXS.A C3L-00993 LSCC WXS tissue_normal CPT0102840006 CPT0102840006.WholeExome.RP-1303.bam 27217497400 BAM aligned CPTAC3 ce7e2445-a343-4346-aca1-1e142edcc127 e9c7e60bfd1b65ce8b80be272f58672b {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.WXS.A.hg38 C3L-00993 LSCC WXS tissue_normal CPT0102840006 9d07d0b9-db86-441c-996a-990a6389901b_wxs_gdc_realn.bam 37013582027 BAM harmonized CPTAC3 7421956e-ccc2-4ee4-bc40-d3c66b8037e1 145b74f79fe0ad27aa408c2383faef7e {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00993.WXS.N C3L-00993 LSCC WXS blood_normal CPT0101090002 CPT0101090002.WholeExome.RP-1303.bam 36366298176 BAM aligned CPTAC3 45487eba-afb4-4429-bb0b-cac4dd1fbb0b 8960a2aa41de3821539102d1a9e54e9f {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal"} -C3L-00993.WXS.N.hg38 C3L-00993 LSCC WXS blood_normal CPT0101090002 3a95c365-c7ec-44e1-88cf-1a5a9711d928_wxs_gdc_realn.bam 50723184715 BAM harmonized CPTAC3 d018d51f-b828-424a-ad81-074aa8e5ae61 d91da6075c0f49747b14f592863b10b4 {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal"} -C3L-00993.WXS.T C3L-00993 LSCC WXS tumor CPT0102790009 CPT0102790009.WholeExome.RP-1303.bam 40215943803 BAM aligned CPTAC3 4dd5f41e-3285-495e-bc0d-4288b88ded3f c1bb766b17e93523f6d9d6709d0586f9 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor"} -C3L-00993.WXS.T.hg38 C3L-00993 LSCC WXS tumor CPT0102790009 a6c3d626-63a7-41ce-9c86-7bb0d30a71b6_wxs_gdc_realn.bam 54205971202 BAM harmonized CPTAC3 b3f92006-fc40-402c-afb4-1f68b89ed7b8 0f0897430139306e9f4f9af785ca2867 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor"} -C3L-00994.MethArray.Green.A C3L-00994 HNSCC Methylation_Array tissue_normal CPT0169750006 203271750057_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8e77d3f5-0501-4757-8050-83f815634ecf f7563f2359f4e3bbfc2a9d8801fb9b5d {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.MethArray.Green.T C3L-00994 HNSCC Methylation_Array tumor CPT0169730006 203220070165_R01C01_Grn.idat 13676209 IDAT Green NA CPTAC3 62423bee-bdae-4ae7-9b1c-968de44ba7c4 c5273d4f6315308c8536c482ce231151 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor"} -C3L-00994.MethArray.Red.A C3L-00994 HNSCC Methylation_Array tissue_normal CPT0169750006 203271750057_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 6a8aaf9e-41cd-4873-88c3-2d3040290cd7 e9334d8b786e509a2f940f433a04bc36 {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.MethArray.Red.T C3L-00994 HNSCC Methylation_Array tumor CPT0169730006 203220070165_R01C01_Red.idat 13676209 IDAT Red NA CPTAC3 ad7a5fc9-36db-4b3c-9d56-17dc34185886 cecb0eefccdad11776c0ec775af1872b {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor"} -C3L-00994.miRNA-Seq.A.hg38 C3L-00994 HNSCC miRNA-Seq tissue_normal CPT0169750009 88e2f5ac-2bb3-48ad-b8de-c50211958189_mirnaseq_gdc_realn.bam 276657208 BAM harmonized CPTAC3 58d374d5-0ae8-41c7-83b8-baa2535b1b83 096588e4225e08f38620fdeca8df0f38 {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.miRNA-Seq.S18_L001_R1.A C3L-00994 HNSCC miRNA-Seq tissue_normal CPT0169750009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L001_R1_001.unaln.bam 247125672 BAM S18_L001_R1 unaligned CPTAC3 70b590f9-5397-4de7-a1df-2936a1df1b0f d91b978df116f0e337cfadc8341d933d {"aliquot_tag": "ALQ_f07200b6", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.miRNA-Seq.S37_L002_R1.T C3L-00994 HNSCC miRNA-Seq tumor CPT0169730009 190228_UNC32-K00270_0151_AHYLY3BBXX_CGGAAT_S37_L002_R1_001.unaln.bam 387002369 BAM S37_L002_R1 unaligned CPTAC3 e9d96586-db44-4b56-9cc9-a53675c8e4c2 0b53c8c26da8e5d56929d3efc3467b1b {"aliquot_tag": "ALQ_7f32f516", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00994.miRNA-Seq.T.hg38 C3L-00994 HNSCC miRNA-Seq tumor CPT0169730009 f68e23ce-f8c2-40af-a8f2-0fb851d699dd_mirnaseq_gdc_realn.bam 424262120 BAM harmonized CPTAC3 6d8be5bb-a629-45b0-bd4d-7db45639ed57 32a8a26e4ce8069d9bceecc1a9c229a0 {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.chimeric.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.chimeric.gdc_realn.bam 196006791 BAM chimeric harmonized CPTAC3 084f2b1a-f7fc-4d11-999e-a3a33bfdc27e efbd12db4b77501d374745fd91b6c23c {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.RNA-Seq.chimeric.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.chimeric.gdc_realn.bam 314836841 BAM chimeric harmonized CPTAC3 d7cc85a4-9751-470b-8a02-33b557513b64 c40c5686b27113cc147e0663905a7792 {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.chimeric.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.chimeric.gdc_realn.bam 61614622 BAM chimeric harmonized CPTAC3 748288ad-ef82-4371-880e-66e107afb011 8cea7f6371973515441a224ac317252d {"aliquot_tag": "ALQ_224254c4", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.genomic.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.genomic.gdc_realn.bam 8505972456 BAM genomic harmonized CPTAC3 a1227660-6d93-4e70-9623-cb73d9aad442 8de9d081898c40702ebfaa803f8aeb59 {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.RNA-Seq.genomic.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.genomic.gdc_realn.bam 6397735944 BAM genomic harmonized CPTAC3 a6c3ede7-97d1-4c46-82e8-79c7ae5b4a81 495368fe9a137f9a65dfbcdc4064be5a {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.genomic.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.genomic.gdc_realn.bam 5915856923 BAM genomic harmonized CPTAC3 ef02eb00-c97b-423e-8113-386e7f25bfac b842cd673dcb7908f49470e3c6abc975 {"aliquot_tag": "ALQ_224254c4", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.S15_L006_R1.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R1_001.fastq.gz 2961714196 FASTQ S15_L006_R1 unaligned CPTAC3 e244d40f-dc82-4b79-8b15-3718db683b05 4298da6093d4ee3247849123c9f64ace {"aliquot_tag": "ALQ_7f32f516", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.S15_L006_R2.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R2_001.fastq.gz 3137682375 FASTQ S15_L006_R2 unaligned CPTAC3 ebb0beb1-26e0-4250-8a86-f82f9caa3ad7 4e2bddd939fd51d48b542f5a587025c3 {"aliquot_tag": "ALQ_7f32f516", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.S16_L004_R1.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R1_001.fastq.gz 4217012607 FASTQ S16_L004_R1 unaligned CPTAC3 b337afe8-58ea-45c3-8bd5-9ef868ded7ac 335145046fa9ad17e9b884c2907f141e {"aliquot_tag": "ALQ_f07200b6", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.RNA-Seq.S16_L004_R2.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R2_001.fastq.gz 4193730244 FASTQ S16_L004_R2 unaligned CPTAC3 d24d1924-a1df-48fc-8ab9-746672bce798 090cf8be2c85d5b5d82dff2aeaabe9ca {"aliquot_tag": "ALQ_f07200b6", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.RNA-Seq.S52_R1.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R1_001.fastq.gz 3746814112 FASTQ S52_R1 unaligned CPTAC3 940b307f-9b3c-4731-9590-a4789bff91c0 6abff3cca169f78d2e52c2816d969826 {"aliquot_tag": "ALQ_224254c4", "sample": "S52", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.S52_R2.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R2_001.fastq.gz 3865482261 FASTQ S52_R2 unaligned CPTAC3 f0141521-60b6-41fc-ab98-9ec99250a71c 994c91fea2318c0f6f9a5c3db3e8bd56 {"aliquot_tag": "ALQ_224254c4", "sample": "S52", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.transcriptome.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.transcriptome.gdc_realn.bam 11929725435 BAM transcriptome harmonized CPTAC3 c4477800-81c1-4144-858e-2ef31f051ad2 eae99bc93ca5bde4155323df456283e3 {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.RNA-Seq.transcriptome.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.transcriptome.gdc_realn.bam 8645692363 BAM transcriptome harmonized CPTAC3 6f549774-6abc-469c-b4a5-2f0b99d0ad84 eb8f506b18063ba1a44d2eefc259ead8 {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor"} -C3L-00994.RNA-Seq.transcriptome.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.transcriptome.gdc_realn.bam 4029279110 BAM transcriptome harmonized CPTAC3 4aa6ba32-1a8f-4f90-a2cd-28ed5e0760c2 396c00844fba5445ecf3ba42e5c5e18b {"aliquot_tag": "ALQ_224254c4", "gdc_sample_type": "Primary Tumor"} -C3L-00994.WGS.N C3L-00994 HNSCC WGS blood_normal CPT0167170002 CPT0167170002.WholeGenome.RP-1303.bam 59024863551 BAM aligned CPTAC3 d428871e-0688-4547-ac0d-a03ae50c8712 6581cd39092de8a590be4a4de7c9a794 {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00994.WGS.N.hg38 C3L-00994 HNSCC WGS blood_normal CPT0167170002 822985be-35ff-4ffe-a7d7-0a85c7a5fe75_wgs_gdc_realn.bam 85957923457 BAM harmonized CPTAC3 858d63f6-daf4-4edc-a5fc-e9ff916949f9 22b8b2318c8092781a5e65edaad78f98 {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00994.WGS.T C3L-00994 HNSCC WGS tumor CPT0169730006 CPT0169730006.WholeGenome.RP-1303.bam 60918189969 BAM aligned CPTAC3 118f0c2b-a602-4881-803c-768495bfdd12 07073baf7d6f536f56f0ac8dbf192dff {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor"} -C3L-00994.WGS.T.hg38 C3L-00994 HNSCC WGS tumor CPT0169730006 69b38344-d664-4be3-9f4a-c8d3607e70fe_wgs_gdc_realn.bam 88786072849 BAM harmonized CPTAC3 feeb7f38-d1d8-4c52-a882-407ee0b58088 8639b653698f5c333df73c0b32d19353 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor"} -C3L-00994.WXS.A C3L-00994 HNSCC WXS tissue_normal CPT0169750006 CPT0169750006.WholeExome.RP-1303.bam 27340081550 BAM aligned CPTAC3 e9e82ea0-2964-4b83-a9da-e0179bd92dd9 2bf06370c2d227fe8efdfe44ba0ecbdc {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.WXS.A.hg38 C3L-00994 HNSCC WXS tissue_normal CPT0169750006 7ea517d3-dbc3-487e-bb41-27787d8635d1_wxs_gdc_realn.bam 37169542182 BAM harmonized CPTAC3 8e702766-c074-4a33-8954-94c2d414c475 1e216ad80242684bbe440f53db9d9b61 {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00994.WXS.N C3L-00994 HNSCC WXS blood_normal CPT0167170002 CPT0167170002.WholeExome.RP-1303.bam 29610465613 BAM aligned CPTAC3 9e7c9a54-3a0d-4a34-a7ee-d65faeea0871 76d66c3c6ea558f8de86d6b11af62e4e {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00994.WXS.N.hg38 C3L-00994 HNSCC WXS blood_normal CPT0167170002 822985be-35ff-4ffe-a7d7-0a85c7a5fe75_wxs_gdc_realn.bam 39722638944 BAM harmonized CPTAC3 4a6e487b-6680-482a-a3f2-4cee465cc37b ce3625fc9f5cdec9ac6ddd2218170a01 {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal"} -C3L-00994.WXS.T C3L-00994 HNSCC WXS tumor CPT0169730006 CPT0169730006.WholeExome.RP-1303.bam 18564511393 BAM aligned CPTAC3 b7120e57-5545-4694-bcd5-271367a7b19e f65d409dca952a327494a96a99af1c01 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor"} -C3L-00994.WXS.T.hg38 C3L-00994 HNSCC WXS tumor CPT0169730006 69b38344-d664-4be3-9f4a-c8d3607e70fe_wxs_gdc_realn.bam 26145917869 BAM harmonized CPTAC3 4713ef7e-1a03-4d1c-99d4-8133272e5128 98893daa31914dafd0873631df869580 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor"} -C3L-00995.MethArray.Green.A C3L-00995 HNSCC Methylation_Array tissue_normal CPT0169920006 203271740101_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 b0f0dbfe-90bf-418e-b599-733321bccbb2 ccbc59ca31d4b132c53e51eb06a3fef0 {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.MethArray.Green.T C3L-00995 HNSCC Methylation_Array tumor CPT0169890006 203271750047_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 bfd8031b-27ae-4297-b706-e0e3fa77af1f dae233e577c9dbbed9f8fecc325e8337 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor"} -C3L-00995.MethArray.Red.A C3L-00995 HNSCC Methylation_Array tissue_normal CPT0169920006 203271740101_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 d03b8f30-4f9e-4cf7-884d-bca0914531e1 bf2126e2f7898da00fc7c898f5174efe {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.MethArray.Red.T C3L-00995 HNSCC Methylation_Array tumor CPT0169890006 203271750047_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 023b72c2-b4f6-4457-b805-3465618b5287 fc6497185010fc94f25e04d2e063fb06 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor"} -C3L-00995.miRNA-Seq.A.hg38 C3L-00995 HNSCC miRNA-Seq tissue_normal CPT0169920009 880fcd0d-5a68-4068-8988-9908e4441e48_mirnaseq_gdc_realn.bam 385742960 BAM harmonized CPTAC3 f877d995-5d57-460a-928b-f52d0b7acc81 59d4b5f4162d705baecfb9618e220b3f {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.miRNA-Seq.S19_L001_R1.A C3L-00995 HNSCC miRNA-Seq tissue_normal CPT0169920009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L001_R1_001.unaln.bam 350087292 BAM S19_L001_R1 unaligned CPTAC3 19a238a0-a19e-415d-b979-a19651a8ce45 ea7b8d5f68b43436a0f33b1a271cd430 {"aliquot_tag": "ALQ_7858bdd6", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.miRNA-Seq.S38_L002_R1.T C3L-00995 HNSCC miRNA-Seq tumor CPT0169890009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTAGCT_S38_L002_R1_001.unaln.bam 180891992 BAM S38_L002_R1 unaligned CPTAC3 11ed9438-0236-4f97-8b36-1fc053747cb9 959deb25ff655674977af1d3fe6681c1 {"aliquot_tag": "ALQ_c4d45f62", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00995.miRNA-Seq.T.hg38 C3L-00995 HNSCC miRNA-Seq tumor CPT0169890009 56281c94-e3c5-411f-8b46-bb226dd7c05d_mirnaseq_gdc_realn.bam 199670875 BAM harmonized CPTAC3 8412d8e6-2c54-4f36-a495-8f0cd706507f 0ca0075d0b4adb9d0a5d3fec119b74d1 {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.chimeric.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.chimeric.gdc_realn.bam 221554086 BAM chimeric harmonized CPTAC3 985764a7-2efd-445b-bdec-bd4dacc134e1 4a53d639b5d89ae5805380227682a478 {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.RNA-Seq.chimeric.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.chimeric.gdc_realn.bam 145630119 BAM chimeric harmonized CPTAC3 98f8463b-8fde-4028-9382-ec405c9fddbe ab6988686d62614d10492bbc52be590f {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.chimeric.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.chimeric.gdc_realn.bam 58375583 BAM chimeric harmonized CPTAC3 9cc5a715-8ef5-4172-8fb4-a70a3f00b268 1f61173699ac767036da723a7aa35068 {"aliquot_tag": "ALQ_ddb8d8b5", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.genomic.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.genomic.gdc_realn.bam 8938218625 BAM genomic harmonized CPTAC3 d3f4c17a-a5a4-4af4-a72e-9ea52bfd58af adb1fc0a3169666aa3b37c0741ee30fa {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.RNA-Seq.genomic.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.genomic.gdc_realn.bam 8285061305 BAM genomic harmonized CPTAC3 4f87e75b-6334-4dfe-81d9-24cc8233b4de 9efb6422ab491d9ca82918f71bd7e345 {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.genomic.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.genomic.gdc_realn.bam 7947243908 BAM genomic harmonized CPTAC3 03d9218c-f24c-4373-a678-d6be47169bb2 fbf8b3c03cf9882106c1eaca5a7e72b0 {"aliquot_tag": "ALQ_ddb8d8b5", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.S17_L005_R1.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R1_001.fastq.gz 4299287502 FASTQ S17_L005_R1 unaligned CPTAC3 d0bbae3e-1e20-4d97-9a66-e366b90dff85 fed91d4c7c7d95cd49325845b5b6d160 {"aliquot_tag": "ALQ_7858bdd6", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.RNA-Seq.S17_L005_R2.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R2_001.fastq.gz 4566648611 FASTQ S17_L005_R2 unaligned CPTAC3 ce96da42-476f-476d-be5a-b92165f58e40 1108b82d873cf489c50328cbb6d16b92 {"aliquot_tag": "ALQ_7858bdd6", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.RNA-Seq.S19_L004_R1.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R1_001.fastq.gz 3727644853 FASTQ S19_L004_R1 unaligned CPTAC3 90a2979f-da7f-4f3a-a98b-4c7b755dc644 5159361960c03e18a455db775cae9f9f {"aliquot_tag": "ALQ_c4d45f62", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.S19_L004_R2.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R2_001.fastq.gz 4118706214 FASTQ S19_L004_R2 unaligned CPTAC3 066d4958-eb61-4cdc-bae4-2eb44cf13186 68360d56dea8b89a5bb7e5d70189c3fe {"aliquot_tag": "ALQ_c4d45f62", "sample": "S19", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.S8_R1.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R1_001.fastq.gz 4414270538 FASTQ S8_R1 unaligned CPTAC3 b155dbb0-3dc1-4731-b673-04c5f8a90f97 8e13dcd2d3907c9b06d30881014e6845 {"aliquot_tag": "ALQ_ddb8d8b5", "sample": "S8", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.S8_R2.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R2_001.fastq.gz 4816856524 FASTQ S8_R2 unaligned CPTAC3 cf720689-f11f-4d47-9b22-3b7f7026f43d 09f2f9144964118937d030c19ab1924d {"aliquot_tag": "ALQ_ddb8d8b5", "sample": "S8", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.transcriptome.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.transcriptome.gdc_realn.bam 14899315227 BAM transcriptome harmonized CPTAC3 a03df94b-b19d-46d4-b3bc-30ffe32451ae fad134891462c822fd622d5e4fcd656b {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.RNA-Seq.transcriptome.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.transcriptome.gdc_realn.bam 9815105765 BAM transcriptome harmonized CPTAC3 f026fb0e-96cc-4471-9da5-9b02454ed580 05af477a65a69011cc247a7b16b6b8c6 {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor"} -C3L-00995.RNA-Seq.transcriptome.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.transcriptome.gdc_realn.bam 5071105679 BAM transcriptome harmonized CPTAC3 c7cd18c3-c92b-44d0-85fd-74765cbf1988 03800c7dfeed42e4d0ae8ab62d7819e6 {"aliquot_tag": "ALQ_ddb8d8b5", "gdc_sample_type": "Primary Tumor"} -C3L-00995.WGS.N C3L-00995 HNSCC WGS blood_normal CPT0167190002 CPT0167190002.WholeGenome.RP-1303.bam 65106845144 BAM aligned CPTAC3 d048bced-1b1c-4aa9-b252-ff0569ecba94 b2b6ba5342e6676921eab55ac0f7c3a6 {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00995.WGS.N.hg38 C3L-00995 HNSCC WGS blood_normal CPT0167190002 bc308dfe-70e7-4a18-932d-5364e9fd4277_wgs_gdc_realn.bam 94454936875 BAM harmonized CPTAC3 da1895a5-e4ba-4b9f-ac70-93112be64086 ae2b9f11ca07ac171e90aa26da895a1b {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00995.WGS.T C3L-00995 HNSCC WGS tumor CPT0169890006 CPT0169890006.WholeGenome.RP-1303.bam 67106050453 BAM aligned CPTAC3 e9a133b1-91d3-4965-a6f1-41acbd891748 762d0c978f28bd31aaccf799888ef8a6 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor"} -C3L-00995.WGS.T.hg38 C3L-00995 HNSCC WGS tumor CPT0169890006 d1ac8e9f-e534-48b3-b4cc-5d74769b6ba9_wgs_gdc_realn.bam 99517944673 BAM harmonized CPTAC3 41b2e6d4-1554-41b7-8519-d948242af2fc 4fae4dc1c8499d11cf4f7d999ff19f8f {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor"} -C3L-00995.WXS.A C3L-00995 HNSCC WXS tissue_normal CPT0169920006 CPT0169920006.WholeExome.RP-1303.bam 27800050084 BAM aligned CPTAC3 dc4a3926-666b-45b2-b6b5-610e044131a5 fc0861e3fa0bd99f65adc6e1afa606e2 {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.WXS.A.hg38 C3L-00995 HNSCC WXS tissue_normal CPT0169920006 3a35d3c6-8915-4e92-b506-d23012a9f135_wxs_gdc_realn.bam 38657167753 BAM harmonized CPTAC3 d00b0b3c-d540-4ae0-91ac-6f43d6b7da69 dd46f0438dd832b12935d7379416f01a {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00995.WXS.N C3L-00995 HNSCC WXS blood_normal CPT0167190002 CPT0167190002.WholeExome.RP-1303.bam 30730050395 BAM aligned CPTAC3 c8703501-069e-4426-8e0f-f2e3ae2cef13 a52aa4ea6a056612726724f74790ae37 {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00995.WXS.N.hg38 C3L-00995 HNSCC WXS blood_normal CPT0167190002 bc308dfe-70e7-4a18-932d-5364e9fd4277_wxs_gdc_realn.bam 42310137746 BAM harmonized CPTAC3 95593db0-5663-4645-9a44-c18afc0a3369 e780553d4637a64b93dd587123f7552c {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-00995.WXS.T C3L-00995 HNSCC WXS tumor CPT0169890006 CPT0169890006.WholeExome.RP-1303.bam 46960390971 BAM aligned CPTAC3 ac86554a-ad12-4426-9eb2-28b651af049d ecf54932122f359c3f7242201064e1c7 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor"} -C3L-00995.WXS.T.hg38 C3L-00995 HNSCC WXS tumor CPT0169890006 d1ac8e9f-e534-48b3-b4cc-5d74769b6ba9_wxs_gdc_realn.bam 64715647525 BAM harmonized CPTAC3 c237f1ce-c10b-45db-ac75-63a3eade8b46 e23d951a2b4af541ba6384a5dd4b1e6f {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor"} -C3L-00997.MethArray.Green.A C3L-00997 HNSCC Methylation_Array tissue_normal CPT0123190006 203271740101_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 22b26113-4864-48f2-a271-04d12ed3483c 65d2a239c79dd3f3972807c95644901c {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.MethArray.Green.T C3L-00997 HNSCC Methylation_Array tumor CPT0123180009 203220070102_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 3479ff9b-45e7-402e-8819-6a33e0837ae1 1ec2efbde450ffd091f18e389bbaceb2 {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor"} -C3L-00997.MethArray.Red.A C3L-00997 HNSCC Methylation_Array tissue_normal CPT0123190006 203271740101_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 95c65fc7-f810-4531-98d2-5be92df6643a 872ecb1deb63c4e611950144747d925b {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.MethArray.Red.T C3L-00997 HNSCC Methylation_Array tumor CPT0123180009 203220070102_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 1896c6ae-dcbe-43c3-a3cb-5cc83519f9a4 cf884be794e5b0d7ba13533938f32c1f {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor"} -C3L-00997.miRNA-Seq.A.hg38 C3L-00997 HNSCC miRNA-Seq tissue_normal CPT0123190009 b7485020-ac57-460c-b918-a4879a6e21d5_mirnaseq_gdc_realn.bam 370745340 BAM harmonized CPTAC3 1090ce1e-a212-4085-a07f-7366de9f7f51 2e44c63fe1a9c20ca0a3db3250a4ba9e {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.miRNA-Seq.S12_L001_R1.A C3L-00997 HNSCC miRNA-Seq tissue_normal CPT0123190009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L001_R1_001.unaln.bam 335507147 BAM S12_L001_R1 unaligned CPTAC3 04f0eca5-9e37-47c7-8296-51fb0d56069b b4c0ba533f2954b90ae53acd2ef69c01 {"aliquot_tag": "ALQ_c3e15f1e", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.miRNA-Seq.S2_L001_R1.T C3L-00997 HNSCC miRNA-Seq tumor CPT0123180006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L001_R1_001.unaln.bam 250731825 BAM S2_L001_R1 unaligned CPTAC3 fd309374-f78b-4073-8127-11fb15c724b7 2fa2692a0c929cacf8b9f90a301b4aed {"aliquot_tag": "ALQ_6e3e6b3f", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00997.miRNA-Seq.T.hg38 C3L-00997 HNSCC miRNA-Seq tumor CPT0123180006 f62af030-f3fc-4074-a870-c4d7a1c2ef6a_mirnaseq_gdc_realn.bam 276759940 BAM harmonized CPTAC3 d5cb05ad-b9c3-44f0-82cd-5089f3ceab03 89dced2df143f9c1af97641724989992 {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.chimeric.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.chimeric.gdc_realn.bam 254757366 BAM chimeric harmonized CPTAC3 5924a67e-f0ac-4df4-b817-540cf45bc77c d1be4743a2fc1a88f55f5521e97c409e {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.RNA-Seq.chimeric.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.chimeric.gdc_realn.bam 194798415 BAM chimeric harmonized CPTAC3 37a380c3-db77-4512-8b1d-d59c291cf806 604be24e40a007f8e1f0defc270b005b {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.chimeric.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.chimeric.gdc_realn.bam 75855906 BAM chimeric harmonized CPTAC3 ecddbc67-110c-4a45-8f9c-efbd627197f0 44701f7d11c93e484fe93f5536749d13 {"aliquot_tag": "ALQ_62c5df02", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.genomic.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.genomic.gdc_realn.bam 7663241469 BAM genomic harmonized CPTAC3 aeb41b7e-9b4a-4a9e-975f-4703a28089dc 7baee70c5b1912682e1377660ff09322 {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.RNA-Seq.genomic.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.genomic.gdc_realn.bam 9992095331 BAM genomic harmonized CPTAC3 8b331167-4527-4b17-a06f-ba09b797d589 aadffbe64ee5a6b8b726fb2e6aa9e809 {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.genomic.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.genomic.gdc_realn.bam 5471374481 BAM genomic harmonized CPTAC3 f19434ac-e240-4efd-8204-5bb10671c2b0 95e48db7c47b6e58401aea7b062e0532 {"aliquot_tag": "ALQ_62c5df02", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.S15_L004_R1.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R1_001.fastq.gz 3484526883 FASTQ S15_L004_R1 unaligned CPTAC3 f0707248-e2d8-4937-a79c-f20c13e7782c 0df32523c667a511dd7cea49bc6a5d1d {"aliquot_tag": "ALQ_c3e15f1e", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.RNA-Seq.S15_L004_R2.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R2_001.fastq.gz 3807487833 FASTQ S15_L004_R2 unaligned CPTAC3 6e7b46a9-26db-4a37-be5f-ee0231a4f4a9 cbcf5d8d3df3c31e3871696a638db43f {"aliquot_tag": "ALQ_c3e15f1e", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.RNA-Seq.S26_R1.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R1_001.fastq.gz 3098836931 FASTQ S26_R1 unaligned CPTAC3 432f3505-e901-4f8e-9b4e-09f93d4394e9 4e5198458ce2eb1ebe477e4c2fb7986d {"aliquot_tag": "ALQ_62c5df02", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.S26_R2.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R2_001.fastq.gz 3235165857 FASTQ S26_R2 unaligned CPTAC3 44b39e6a-efa0-41d6-887d-0d38e600640b cf806bbe4c51979f880db77b754c334f {"aliquot_tag": "ALQ_62c5df02", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.S2_L001_R1.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R1_001.fastq.gz 4736766213 FASTQ S2_L001_R1 unaligned CPTAC3 ecf832e9-e81b-4dfa-8ab3-d97644678800 35d7c875ff514764d81bc90813f869fe {"aliquot_tag": "ALQ_6e3e6b3f", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.S2_L001_R2.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R2_001.fastq.gz 5164997370 FASTQ S2_L001_R2 unaligned CPTAC3 edfdf8c7-5c05-41a7-a9ac-156d17ed29b8 019211054f0e133b73c9d14d922a1764 {"aliquot_tag": "ALQ_6e3e6b3f", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.transcriptome.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.transcriptome.gdc_realn.bam 9856931868 BAM transcriptome harmonized CPTAC3 ea83c9b8-0062-40fc-8b68-193f7c2ced7d e3590e3d87655a0f8e3eda602366e91c {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.RNA-Seq.transcriptome.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.transcriptome.gdc_realn.bam 13125928254 BAM transcriptome harmonized CPTAC3 5f893703-b6df-4b34-a3bd-7ac96f394337 c2f8ff78ea2b1f9052a4ace9af50b948 {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor"} -C3L-00997.RNA-Seq.transcriptome.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.transcriptome.gdc_realn.bam 2049994455 BAM transcriptome harmonized CPTAC3 9ff88287-ad08-496c-8226-91b39f87d868 d28f1d7d052922220fda08ef222beaee {"aliquot_tag": "ALQ_62c5df02", "gdc_sample_type": "Primary Tumor"} -C3L-00997.WGS.N C3L-00997 HNSCC WGS blood_normal CPT0124760002 CPT0124760002.WholeGenome.RP-1303.bam 60254780382 BAM aligned CPTAC3 fc38aa9c-e395-4060-b519-a28e277483d5 f5c06d6418788f1baa328c5100287fba {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00997.WGS.N.hg38 C3L-00997 HNSCC WGS blood_normal CPT0124760002 92aa3418-7075-4520-ae3b-21a3ebbe0b27_wgs_gdc_realn.bam 87076793354 BAM harmonized CPTAC3 74db5359-40ee-4ae9-b386-3e6b79800f6e a978e5ad8595706c0ef11e2d481115b7 {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00997.WGS.T C3L-00997 HNSCC WGS tumor CPT0123180009 CPT0123180009.WholeGenome.RP-1303.bam 56145305636 BAM aligned CPTAC3 c9c33913-d553-4fbb-b527-0929fc2e4afe 0db402d433be9178eae3a7642ac1fb14 {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor"} -C3L-00997.WGS.T.hg38 C3L-00997 HNSCC WGS tumor CPT0123180009 1e3b8e97-6196-4930-9588-abbe7c613637_wgs_gdc_realn.bam 84230097730 BAM harmonized CPTAC3 6479db6e-982c-42cd-9c0c-f4b7c6bf74ae 0ef43b8d05b1c8c74ba0c5c0b3c8761e {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor"} -C3L-00997.WXS.A C3L-00997 HNSCC WXS tissue_normal CPT0123190006 CPT0123190006.WholeExome.RP-1303.bam 43664963011 BAM aligned CPTAC3 1a1a8d17-a6bd-43ad-9956-4109bd93c40b 7679f1a793134ffa5e3a4d39b3893783 {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.WXS.A.hg38 C3L-00997 HNSCC WXS tissue_normal CPT0123190006 0e973753-0624-4e38-bc17-6d7a27df99ba_wxs_gdc_realn.bam 60210487103 BAM harmonized CPTAC3 572349f9-41b8-4a46-94f3-63bae49c8107 0b83f9a61aed34b3eac9f4b134595463 {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00997.WXS.N C3L-00997 HNSCC WXS blood_normal CPT0124760002 CPT0124760002.WholeExome.RP-1303.bam 26786173310 BAM aligned CPTAC3 32834f55-f0a2-4377-90a0-29af056722fa 70965e4fc05b30d67aba154b043da91a {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00997.WXS.N.hg38 C3L-00997 HNSCC WXS blood_normal CPT0124760002 92aa3418-7075-4520-ae3b-21a3ebbe0b27_wxs_gdc_realn.bam 37729106888 BAM harmonized CPTAC3 65627bf0-c463-49ed-950f-2a18a61e68b1 8f3204bd910fc04863ed0a7f08068e93 {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-00997.WXS.T C3L-00997 HNSCC WXS tumor CPT0123180009 CPT0123180009.WholeExome.RP-1303.bam 31902550358 BAM aligned CPTAC3 93d0aef7-022f-4037-a1ed-ff103eb59e48 e81a1057b01f3947d21d2ff43f211bad {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor"} -C3L-00997.WXS.T.hg38 C3L-00997 HNSCC WXS tumor CPT0123180009 1e3b8e97-6196-4930-9588-abbe7c613637_wxs_gdc_realn.bam 42996853634 BAM harmonized CPTAC3 2b9de4e4-0f34-4dba-b986-2957d4a3c088 a54114cc6a9a0d876777e9fc319e97b0 {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor"} -C3L-00999.MethArray.Green.A C3L-00999 HNSCC Methylation_Array tissue_normal CPT0123280006 203219640047_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4e77463e-43b5-4c5d-9be6-273c97af00e0 35de9d87473fd05ad2a3e9a41133125f {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.MethArray.Green.T C3L-00999 HNSCC Methylation_Array tumor CPT0123260009 203271740111_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f3132582-a2f9-48e1-99d6-634e9188fbd7 038fe512ac18ef0e02c27c776b3645e6 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor"} -C3L-00999.MethArray.Red.A C3L-00999 HNSCC Methylation_Array tissue_normal CPT0123280006 203219640047_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 e626ad2f-463f-4a76-9d7b-c3502acbfe42 50230aaf46d58c8d9fccfa1a930891a7 {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.MethArray.Red.T C3L-00999 HNSCC Methylation_Array tumor CPT0123260009 203271740111_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 a6c43a04-3fa4-4607-9906-c553f15edf79 7000967821d3348ce8c1ec4438264962 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor"} -C3L-00999.miRNA-Seq.A.hg38 C3L-00999 HNSCC miRNA-Seq tissue_normal CPT0123280009 8cbf1670-c9c1-4bfb-bdf9-1ce8eb26d394_mirnaseq_gdc_realn.bam 266111168 BAM harmonized CPTAC3 a3b771e5-2f99-4153-8d80-fefc5e57fa7c 8e7a2ffaf975058bd4086a59942f3138 {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.miRNA-Seq.S3_L001_R1.T C3L-00999 HNSCC miRNA-Seq tumor CPT0123260006 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L001_R1_001.unaln.bam 216113765 BAM S3_L001_R1 unaligned CPTAC3 3db16914-0d20-4846-9435-c42d7d9e58c3 d593c993b265f2d0f03add2cf4823752 {"aliquot_tag": "ALQ_579aa7f0", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00999.miRNA-Seq.S41_L002_R1.A C3L-00999 HNSCC miRNA-Seq tissue_normal CPT0123280009 190228_UNC32-K00270_0151_AHYLY3BBXX_GACGAC_S41_L002_R1_001.unaln.bam 239055138 BAM S41_L002_R1 unaligned CPTAC3 c06a93a1-1123-436d-ad13-b3d3ea8aabeb fb8374872ce50f959f34d4d3683c6b5f {"aliquot_tag": "ALQ_78150400", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.miRNA-Seq.T.hg38 C3L-00999 HNSCC miRNA-Seq tumor CPT0123260006 381a8e67-2de2-4837-b7a9-98378c91c6f8_mirnaseq_gdc_realn.bam 234271060 BAM harmonized CPTAC3 cff6fd71-8897-48c9-a471-f45f031e0db1 ece753ad9a21e0100291d0fdbbf4aa3f {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.chimeric.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.chimeric.gdc_realn.bam 140187098 BAM chimeric harmonized CPTAC3 6739ce5f-fe50-4d8a-8ea7-33ee85371043 9510fe0d3cf3105d8a221b5a05731144 {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.RNA-Seq.chimeric.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.chimeric.gdc_realn.bam 262651946 BAM chimeric harmonized CPTAC3 a23575d6-877a-4f63-92ce-c01feabeb44b 929b3939cfccc12154f1d2fb76c474a8 {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.chimeric.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.chimeric.gdc_realn.bam 50079793 BAM chimeric harmonized CPTAC3 f9bef0e9-efd3-44e2-9a12-70a220251f4e 425771ec3edac2b99bebb6689e076f04 {"aliquot_tag": "ALQ_52b594c3", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.genomic.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.genomic.gdc_realn.bam 8257335894 BAM genomic harmonized CPTAC3 f360f6f7-1035-4c20-82ea-be95f440322d 311dd2f2a6a9a9235456ac7f59380615 {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.RNA-Seq.genomic.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.genomic.gdc_realn.bam 7997407135 BAM genomic harmonized CPTAC3 7ac9f8d0-7fdf-4108-88c0-d54a03a2add2 6c3316742d5677589a7654fed405e8c5 {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.genomic.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.genomic.gdc_realn.bam 30378571373 BAM genomic harmonized CPTAC3 f8500269-6ebd-4f90-9be6-289de1adbb32 f72d3a529d8c83bf848094bde579edfd {"aliquot_tag": "ALQ_52b594c3", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.S1_L001_R1.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R1_001.fastq.gz 3602337799 FASTQ S1_L001_R1 unaligned CPTAC3 14ecbf5e-c51a-43e9-9b63-bb84351fde6b 2e042203720deb4df207d8cb1202b2bf {"aliquot_tag": "ALQ_579aa7f0", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.S1_L001_R2.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R2_001.fastq.gz 3982917594 FASTQ S1_L001_R2 unaligned CPTAC3 5e996749-5d5a-455f-9bf5-ca45e9d5da48 3c82b0ffe38f86f4911fdd1a32c54755 {"aliquot_tag": "ALQ_579aa7f0", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.S26_R1.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R1_001.fastq.gz 5986804492 FASTQ S26_R1 unaligned CPTAC3 0c36ce5c-ad53-4928-a55c-e2a256d211d6 362e02d2c2fb69dded0466c1c68d84ce {"aliquot_tag": "ALQ_52b594c3", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.S26_R2.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R2_001.fastq.gz 5838493414 FASTQ S26_R2 unaligned CPTAC3 b50ef8cf-0b84-48a5-8a5e-5ba00ab97f46 ea53c22b118abee045e3ae7fc7e0df6d {"aliquot_tag": "ALQ_52b594c3", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.S4_L001_R1.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R1_001.fastq.gz 3767723611 FASTQ S4_L001_R1 unaligned CPTAC3 95ea98d0-3858-4fb3-808a-c1ead8fcb4e6 6a630e20fd727a48aab6c1d71c4a2f2a {"aliquot_tag": "ALQ_78150400", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.RNA-Seq.S4_L001_R2.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R2_001.fastq.gz 4296533978 FASTQ S4_L001_R2 unaligned CPTAC3 c04fed22-64f2-4f6d-80de-e10160ddef1f 480ccf50a7cf70c815b7806f5fabc218 {"aliquot_tag": "ALQ_78150400", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.RNA-Seq.transcriptome.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.transcriptome.gdc_realn.bam 12308461069 BAM transcriptome harmonized CPTAC3 1e6b1678-ee8b-485f-97ab-6bd547829fad a9f21c3c103d9ca9efdab64d7ac84cfe {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.RNA-Seq.transcriptome.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.transcriptome.gdc_realn.bam 9764784210 BAM transcriptome harmonized CPTAC3 a68da4aa-466b-492e-b033-f85bfd2025bc 090bd5627a274ab109e751bd5d023a95 {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor"} -C3L-00999.RNA-Seq.transcriptome.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.transcriptome.gdc_realn.bam 4492905466 BAM transcriptome harmonized CPTAC3 89076a3b-2a25-4498-bf64-f53952f87fd2 030cf9f329e0ba517ed2299130f4b2de {"aliquot_tag": "ALQ_52b594c3", "gdc_sample_type": "Primary Tumor"} -C3L-00999.WGS.N C3L-00999 HNSCC WGS blood_normal CPT0124780002 CPT0124780002.WholeGenome.RP-1303.bam 61102256664 BAM aligned CPTAC3 45384f8b-7271-44cc-8188-e6e24235becd e1455436fc1292edc0ab798a480bc4ac {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00999.WGS.N.hg38 C3L-00999 HNSCC WGS blood_normal CPT0124780002 a78e438f-2565-4383-b625-43310079ac32_wgs_gdc_realn.bam 88876590392 BAM harmonized CPTAC3 03d51c99-8605-4ad4-8427-0e0c40a00af6 45312d18ec85ac4d06425a4bbcca2c8e {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00999.WGS.T C3L-00999 HNSCC WGS tumor CPT0123260009 CPT0123260009.WholeGenome.RP-1303.bam 57573204745 BAM aligned CPTAC3 67dd609a-95b4-4cf6-9c89-4376a8904f63 a2ff8d83e6d3e93ad624ac60144afd3b {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor"} -C3L-00999.WGS.T.hg38 C3L-00999 HNSCC WGS tumor CPT0123260009 ab838072-d27e-4066-9e36-7ff17592c06c_wgs_gdc_realn.bam 84804024704 BAM harmonized CPTAC3 1511a82d-85d0-49dc-bd4f-52c99a00de36 c6eecc69ab81284c26df98ddf61ca408 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor"} -C3L-00999.WXS.A C3L-00999 HNSCC WXS tissue_normal CPT0123280006 CPT0123280006.WholeExome.RP-1303.bam 43947148246 BAM aligned CPTAC3 2736c656-017f-46da-931a-754fed073771 7afcac5250219b4d6603c01153de46a9 {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.WXS.A.hg38 C3L-00999 HNSCC WXS tissue_normal CPT0123280006 240c0e02-7920-4bdf-8a45-a537c91bc17b_wxs_gdc_realn.bam 60189199742 BAM harmonized CPTAC3 34a82836-23d2-45bf-b43a-1b5816207e9d 8c2f5f4729f3005b4486242178702265 {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal"} -C3L-00999.WXS.N C3L-00999 HNSCC WXS blood_normal CPT0124780002 CPT0124780002.WholeExome.RP-1303.bam 29439996368 BAM aligned CPTAC3 980428d7-2ffe-4b11-b34c-efdc78f8d362 b7ce658bf1d1fe45e4340376f49bc9cc {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00999.WXS.N.hg38 C3L-00999 HNSCC WXS blood_normal CPT0124780002 a78e438f-2565-4383-b625-43310079ac32_wxs_gdc_realn.bam 40331707482 BAM harmonized CPTAC3 a0a3d309-499c-4af7-85a8-42b7de90f595 300d43cb6adc7658552d1d0e38bf1dc6 {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal"} -C3L-00999.WXS.T C3L-00999 HNSCC WXS tumor CPT0123260009 CPT0123260009.WholeExome.RP-1303.bam 23126509704 BAM aligned CPTAC3 4ee1d8ca-7235-4a4e-b2e0-9fee1ef9c6c1 b76ca12b56820d223f27d0aa73fce3e5 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor"} -C3L-00999.WXS.T.hg38 C3L-00999 HNSCC WXS tumor CPT0123260009 ab838072-d27e-4066-9e36-7ff17592c06c_wxs_gdc_realn.bam 31829941925 BAM harmonized CPTAC3 863d8326-034e-4eee-af13-3f6d836825ac ccf48e148459d40bebdb091af7a984a3 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor"} -C3L-01000.MethArray.Green.A C3L-01000 LSCC Methylation_Array tissue_normal CPT0123370006 203219650176_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a8770a56-42ab-4a55-80b0-f28c29e625d3 ecf296400bb8a3421bd845afa8d45661 {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.MethArray.Green.T C3L-01000 LSCC Methylation_Array tumor CPT0123350009 203219650221_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5c4f3868-df1c-4d12-b6a1-407330c73d42 398c308999974390ab2b391779d2497d {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor"} -C3L-01000.MethArray.Red.A C3L-01000 LSCC Methylation_Array tissue_normal CPT0123370006 203219650176_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 b2afef51-5806-4ffc-9a09-d1d914124ca9 bfcb5b90871ca2e98ceebbb26cafb233 {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.MethArray.Red.T C3L-01000 LSCC Methylation_Array tumor CPT0123350009 203219650221_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 31a802d8-8491-487a-af8c-a9c14107ddd9 6c587cf2ea6b2f660cfa3bd4a435b7fe {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor"} -C3L-01000.miRNA-Seq.A.hg38 C3L-01000 LSCC miRNA-Seq tissue_normal CPT0123370009 21fa34fd-0fd7-4924-8a09-542f0ed4c3bf_mirnaseq_gdc_realn.bam 251801149 BAM harmonized CPTAC3 e95e30a1-445e-469f-abce-e49e3e80caed 081915d9244efd0f879d76a513209e23 {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.miRNA-Seq.S25_L002_R1.A C3L-01000 LSCC miRNA-Seq tissue_normal CPT0123370009 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGAGC_S25_L002_R1_001.unaln.bam 227157999 BAM S25_L002_R1 unaligned CPTAC3 211d0c0f-9e09-4a78-9c85-1f7c3fee8dce 5c5558c909633356b37829740f003f4e {"aliquot_tag": "ALQ_31194074", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.miRNA-Seq.S8_L001_R1.T C3L-01000 LSCC miRNA-Seq tumor CPT0123350006 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTTGA_S8_L001_R1_001.unaln.bam 231814799 BAM S8_L001_R1 unaligned CPTAC3 138e7dda-1a38-4895-b82b-6f64b56f49b2 e30f8253962cf41af0e801e6ed3c3c94 {"aliquot_tag": "ALQ_db660e85", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01000.miRNA-Seq.T.hg38 C3L-01000 LSCC miRNA-Seq tumor CPT0123350006 779d5564-8d58-415c-afe5-20565a018e30_mirnaseq_gdc_realn.bam 255553070 BAM harmonized CPTAC3 5d9ebe83-4420-4257-8139-f1a0d85194be a322a78c20f9e7b708c883a6eded3e20 {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor"} -C3L-01000.RNA-Seq.chimeric.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.chimeric.gdc_realn.bam 36279625 BAM chimeric harmonized CPTAC3 6a30ff94-5ed4-471d-9e0b-d359112c9395 b70d95ee2828b8432f66c0eccdc37044 {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.RNA-Seq.chimeric.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.chimeric.gdc_realn.bam 40232863 BAM chimeric harmonized CPTAC3 1775fda5-e51f-4e2b-8dc7-93762dc3c621 9b9fcf37a469ce33701a96f60f46dd9d {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor"} -C3L-01000.RNA-Seq.genomic.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.genomic.gdc_realn.bam 9974367835 BAM genomic harmonized CPTAC3 4ec53294-5416-421d-b8e9-e7cbb6e2a75c 4197ff36aab8d755b7d8146079200443 {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.RNA-Seq.genomic.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.genomic.gdc_realn.bam 9093928103 BAM genomic harmonized CPTAC3 683cd9f3-dcc4-409f-a29c-edbb3c0a6e3e 86faf7722df51a352f731c9ebd45a90f {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor"} -C3L-01000.RNA-Seq.S11_L003_R1.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4738534771 FASTQ S11_L003_R1 unaligned CPTAC3 84652f9c-24e8-4689-806b-b782c8223291 983add528c7229b541481549bf8d6d1c {"aliquot_tag": "ALQ_31194074", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.RNA-Seq.S11_L003_R2.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5002039235 FASTQ S11_L003_R2 unaligned CPTAC3 d5b739c6-d2b8-48ef-be80-dbeb2933596a ddf33b50efdad5fce677a5c0f128d170 {"aliquot_tag": "ALQ_31194074", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.RNA-Seq.S24_L006_R1.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R1_001.fastq.gz 4155612489 FASTQ S24_L006_R1 unaligned CPTAC3 d36bfa58-2428-4e27-9746-0edb7b070682 5af94a04acca392a8e2fe2acc82584c7 {"aliquot_tag": "ALQ_db660e85", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01000.RNA-Seq.S24_L006_R2.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4399334101 FASTQ S24_L006_R2 unaligned CPTAC3 b1f9fcb7-9569-49ed-a5c4-10d7f4ba73fa 7c0ff3b69f6b17a25be73ce9a87e008a {"aliquot_tag": "ALQ_db660e85", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01000.RNA-Seq.transcriptome.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.transcriptome.gdc_realn.bam 12524703182 BAM transcriptome harmonized CPTAC3 806c269a-3304-4f8a-90cf-fdce3f74a6eb e49cec3d44b1aa0916782a58521a4e6f {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.RNA-Seq.transcriptome.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.transcriptome.gdc_realn.bam 10419126278 BAM transcriptome harmonized CPTAC3 1ed09984-d83f-47a8-8d13-e91e812d7d13 fa2755d164b87398296ad91a21a47926 {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor"} -C3L-01000.WGS.A C3L-01000 LSCC WGS tissue_normal CPT0123370006 CPT0123370006.WholeGenome.RP-1303.bam 58108600663 BAM aligned CPTAC3 191a5c8c-1380-4b7c-b754-419066421ad1 9d7b3e1aee2428c2d21fa24e8a832b4c {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.WGS.A.hg38 C3L-01000 LSCC WGS tissue_normal CPT0123370006 e847cd05-b1e9-4333-bc61-45fbc0c69179_wgs_gdc_realn.bam 84434318781 BAM harmonized CPTAC3 0ad90838-2ef4-47a6-83d7-16c82d4eeba8 5e03af8b2c7e29fc0b0ea71638f92a4f {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.WGS.N C3L-01000 LSCC WGS blood_normal CPT0124800002 CPT0124800002.WholeGenome.RP-1303.bam 68095363146 BAM aligned CPTAC3 eceaa181-d940-4654-8608-9fa99223c88c b3c35891bb378d03cedfc981b2b7959d {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01000.WGS.N.hg38 C3L-01000 LSCC WGS blood_normal CPT0124800002 11276d27-830d-4769-ad1b-c68676e58625_wgs_gdc_realn.bam 97368795130 BAM harmonized CPTAC3 e8856e7c-0843-494a-af8e-39e107a3d76c fb3c8c1112d839336ccb7ffa185655f5 {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01000.WGS.T C3L-01000 LSCC WGS tumor CPT0123350009 CPT0123350009.WholeGenome.RP-1303.bam 60885631565 BAM aligned CPTAC3 2a371257-e30f-4e74-a17a-26ba34ccad62 3b5281f129d6096d901d07be43bbff52 {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor"} -C3L-01000.WGS.T.hg38 C3L-01000 LSCC WGS tumor CPT0123350009 85d26179-d508-42a7-96c2-c030e69c8600_wgs_gdc_realn.bam 89628862053 BAM harmonized CPTAC3 07bf958a-9383-4a54-8aae-39f24c5ecc8d 637c02fde3f131b6ec312bce8943e2fe {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor"} -C3L-01000.WXS.A C3L-01000 LSCC WXS tissue_normal CPT0123370006 CPT0123370006.WholeExome.RP-1303.bam 21323240386 BAM aligned CPTAC3 feafd43b-a790-4828-b0ff-76b37a096cef 2aa60096afe512552e4d99dc8cc11706 {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.WXS.A.hg38 C3L-01000 LSCC WXS tissue_normal CPT0123370006 e847cd05-b1e9-4333-bc61-45fbc0c69179_wxs_gdc_realn.bam 29507870591 BAM harmonized CPTAC3 ad78c3eb-5dc6-4554-97c1-6b4e6eb43775 f8296afe0496961bceb9e3241687584e {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01000.WXS.N C3L-01000 LSCC WXS blood_normal CPT0124800002 CPT0124800002.WholeExome.RP-1303.bam 27246814658 BAM aligned CPTAC3 e097e590-c48a-4f84-9405-bc8819f01159 c10c916e40082d31775fa2fe85050005 {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01000.WXS.N.hg38 C3L-01000 LSCC WXS blood_normal CPT0124800002 11276d27-830d-4769-ad1b-c68676e58625_wxs_gdc_realn.bam 37186794701 BAM harmonized CPTAC3 a75e05d6-84aa-404a-a7e6-23e76a4fdc89 9e17785427d9db3dd43fc2fb5aae6bd2 {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01000.WXS.T C3L-01000 LSCC WXS tumor CPT0123350009 CPT0123350009.WholeExome.RP-1303.bam 42024315173 BAM aligned CPTAC3 2e631234-e4ee-4263-a2b6-517f7f001874 b707e98a9aa4dc452b4b6bc9fab2b39b {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor"} -C3L-01000.WXS.T.hg38 C3L-01000 LSCC WXS tumor CPT0123350009 85d26179-d508-42a7-96c2-c030e69c8600_wxs_gdc_realn.bam 57160573198 BAM harmonized CPTAC3 d793c326-a30f-4dc6-848d-bb47a385666a 7f4c2fb3f890fa97f9532eda218bf8d3 {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor"} -C3L-01031.MethArray.Green.A C3L-01031 PDA Methylation_Array tissue_normal CPT0127290006 203561450008_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a96b353e-f242-43e3-bc77-60795d79ec5d 038feda476a9c04bf1572eda46f15193 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01031.MethArray.Green.T C3L-01031 PDA Methylation_Array tumor CPT0127270006 203220070082_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e55bf806-fe3c-4e25-a511-53445c576257 3b6d74cbb038fdd23761a132c5cca9f5 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor"} -C3L-01031.MethArray.Red.A C3L-01031 PDA Methylation_Array tissue_normal CPT0127290006 203561450008_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 6438ab48-a230-41cb-a065-48ea3550dc85 93ac9caee3511ab21cae54e9f0605d50 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01031.MethArray.Red.T C3L-01031 PDA Methylation_Array tumor CPT0127270006 203220070082_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 d4d319d9-911c-4a15-b818-b3bf2133a66e ee72067a507f7c1ab3e7710bbb114768 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor"} -C3L-01031.miRNA-Seq.S43_L002_R1.T C3L-01031 PDA miRNA-Seq tumor CPT0127270009 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 227915261 BAM S43_L002_R1 unaligned CPTAC3 1aa17a45-f236-4e1a-8aac-2cc50045a892 c8385ee061a7d348f828403668a3f7c5 {"aliquot_tag": "ALQ_e0ab7c2", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01031.miRNA-Seq.T.hg38 C3L-01031 PDA miRNA-Seq tumor CPT0127270009 721c9c8a-a3bd-45c3-a48f-4deca349a523_mirnaseq_gdc_realn.bam 249699282 BAM harmonized CPTAC3 df290789-88d2-40c9-8cd2-7b45e1503108 c7862d2e5212fa1a78a8be73d64bfc35 {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor"} -C3L-01031.RNA-Seq.chimeric.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.chimeric.gdc_realn.bam 114485904 BAM chimeric harmonized CPTAC3 dedd8a89-b9a6-4962-a44d-feff733a6b12 03e8335099081fbeaff6d540e2c9b0ea {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor"} -C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.genomic.gdc_realn.bam 8725779320 BAM genomic harmonized CPTAC3 5841f0bd-509d-4d70-841d-d6248b0afdcb 372a77f200d986e940f0fb1b7a4699cc {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor"} -C3L-01031.RNA-Seq.S56_L007_R1.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R1_001.fastq.gz 4124718224 FASTQ S56_L007_R1 unaligned CPTAC3 a26dd3d2-e43c-4e14-a1ed-3bfdf45e8a1a d76b0c3d24fc8fbaeb967716cf219c86 {"aliquot_tag": "ALQ_e0ab7c2", "sample": "S56", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01031.RNA-Seq.S56_L007_R2.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R2_001.fastq.gz 4413825785 FASTQ S56_L007_R2 unaligned CPTAC3 91301da0-ce18-46c8-af66-e47970a76390 ea35c50ac27801d429e0129ff5b85b95 {"aliquot_tag": "ALQ_e0ab7c2", "sample": "S56", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01031.RNA-Seq.transcriptome.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.transcriptome.gdc_realn.bam 12564205246 BAM transcriptome harmonized CPTAC3 f26b581f-deba-4e09-8140-fc915beb3844 d83e4cd6e5aece283b727fd645c6fd13 {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor"} -C3L-01031.Targeted.T C3L-01031 PDA Targeted_Sequencing tumor CPT0127270006_1 CPT0127270006_1.CustomSelection.RP-1303.PDO-18786.bam 5045331329 BAM aligned CPTAC3 9297de8f-2235-468f-bda8-39a96769338c 62bbea559cf4dd21d2a9bbf6cfb9da4a {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor"} -C3L-01031.Targeted.T.hg38 C3L-01031 PDA Targeted_Sequencing tumor CPT0127270006_1 00638581-641f-489f-b9a7-e3977e1f205a_targetedsequencing_gdc_realn.bam 7031936170 BAM harmonized CPTAC3 16db0593-aa61-4760-9a5f-7e7e45335e30 f3cda9152aeb15ace714b0965c027b67 {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor"} -C3L-01031.WGS.A C3L-01031 PDA WGS tissue_normal CPT0127290006 CPT0127290006.WholeGenome.RP-1303.bam 68947923606 BAM aligned CPTAC3 2d367b28-03d9-4037-aaa5-43eaa6564933 c25a4b01dd63b082d161bd1073be94e7 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01031.WGS.A.hg38 C3L-01031 PDA WGS tissue_normal CPT0127290006 1387c555-23d6-476a-9447-1cc6a66dd065_wgs_gdc_realn.bam 102484139312 BAM harmonized CPTAC3 35da4930-c750-40b2-8ed1-755994133099 59ccc6574cb5e2739f46daff1adc4d1e {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01031.WGS.N C3L-01031 PDA WGS blood_normal CPT0128520002 CPT0128520002.WholeGenome.RP-1303.bam 65600126839 BAM aligned CPTAC3 4c5cd2a3-2060-4848-998a-a541d4143ac0 52d7b7da53265d13b1cfe4743aefb261 {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01031.WGS.N.hg38 C3L-01031 PDA WGS blood_normal CPT0128520002 f2683a7b-a49a-48af-91ee-c9185ea9ee2b_wgs_gdc_realn.bam 95686085424 BAM harmonized CPTAC3 9e025f7e-69fd-4ead-b0ec-3fd303ed6950 156bf9e31befae29f552b6ade6d860f6 {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01031.WGS.T C3L-01031 PDA WGS tumor CPT0127270006 CPT0127270006.WholeGenome.RP-1303.bam 69119612211 BAM aligned CPTAC3 1ecb6992-9789-47e0-ad65-c5e077e9ff39 dff466e27359dfb064f5ad5eaca3b5bc {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor"} -C3L-01031.WGS.T.hg38 C3L-01031 PDA WGS tumor CPT0127270006 1f3f0768-6250-4695-8d3f-989ec70b0b7a_wgs_gdc_realn.bam 101716793422 BAM harmonized CPTAC3 64832014-185f-4fb8-8412-aae7839a6afb d3de2609268a9e6344ec912430520774 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor"} -C3L-01031.WXS.A C3L-01031 PDA WXS tissue_normal CPT0127290006 CPT0127290006.WholeExome.RP-1303.bam 30699872085 BAM aligned CPTAC3 d77b2d08-c63b-4d57-afb9-c1e5a07f470c 75671c7aa25700efc36cfecc0e24eff0 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01031.WXS.A.hg38 C3L-01031 PDA WXS tissue_normal CPT0127290006 1387c555-23d6-476a-9447-1cc6a66dd065_wxs_gdc_realn.bam 41698060907 BAM harmonized CPTAC3 e8676515-3278-40ac-94bf-49e1d866f496 83e46f80f22412c0384f217626ec3825 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01031.WXS.N C3L-01031 PDA WXS blood_normal CPT0128520002 CPT0128520002.WholeExome.RP-1303.bam 32529297464 BAM aligned CPTAC3 538aacf8-df4b-4c51-a7be-497704541baa 01f9fa7e761232c7648126e8e07a21db {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01031.WXS.N.hg38 C3L-01031 PDA WXS blood_normal CPT0128520002 f2683a7b-a49a-48af-91ee-c9185ea9ee2b_wxs_gdc_realn.bam 44380355106 BAM harmonized CPTAC3 9b512fa1-7285-4601-b1bd-2e7420eb1887 2eaa6d6dd1142585d77914823be6cc14 {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01031.WXS.T C3L-01031 PDA WXS tumor CPT0127270006_1 CPT0127270006_1.WholeExome.RP-1303.bam 79057839542 BAM aligned CPTAC3 a6a35f8f-ef5f-4955-8022-fa8e688a01f6 5046ed28769b476596f5bc4282547461 {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor"} -C3L-01031.WXS.T C3L-01031 PDA WXS tumor CPT0127270006 CPT0127270006.WholeExome.RP-1303.bam 43194782152 BAM aligned CPTAC3 558879b4-6489-4c7b-b61a-3a9c4c2431d7 ca363a7d5e0ce2ecca8adec4ba2ce9ee {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor"} -C3L-01031.WXS.T.hg38 C3L-01031 PDA WXS tumor CPT0127270006_1 00638581-641f-489f-b9a7-e3977e1f205a_wxs_gdc_realn.bam 108982492276 BAM harmonized CPTAC3 de67e714-bfec-421b-8a64-30b7cc83d5d3 63a2b68c103461fb02bacb20e2cb2d15 {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor"} -C3L-01031.WXS.T.hg38 C3L-01031 PDA WXS tumor CPT0127270006 1f3f0768-6250-4695-8d3f-989ec70b0b7a_wxs_gdc_realn.bam 59367704682 BAM harmonized CPTAC3 a4149f81-c773-48bf-98dd-65252c5b8e19 fb6ad71bfe1e6547a36b90ed0c276200 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_8137371.WXS.T C3L-01032 PDA WXS tumor CPT0170510019 CPT0170510019.WholeExome.RP-1303.bam 60472160349 BAM aligned CPTAC3 cdeb2cfd-8a06-455e-8e84-b7b9235d2373 2c34dc6a2e82796659661516ba3a1f7a {"aliquot_tag": "DUP_8137371", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_8137371.WXS.T.hg38 C3L-01032 PDA WXS tumor CPT0170510019 d30ab124-bcd9-49ba-bf31-10a7bfa5cfdb_wxs_gdc_realn.bam 84162158646 BAM harmonized CPTAC3 a5f1081e-8347-481c-8f09-cc68fdaa2e48 38a14481029991254a3f23154899fbe2 {"aliquot_tag": "DUP_8137371", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.MethArray.Green.T C3L-01032 PDA Methylation_Array tumor CPT0170510026 203561620054_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5352929d-5535-4b00-b982-878411b63c06 c2b60e544fbf0e10ab4c2ca97379b977 {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.MethArray.Red.T C3L-01032 PDA Methylation_Array tumor CPT0170510026 203561620054_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 7b6f794c-f6e3-4b16-ab8e-00ba973c4b65 4715356352c05a8be9e4cf3a452d582c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.Targeted.T C3L-01032 PDA Targeted_Sequencing tumor CPT0170510026 CPT0170510026.CustomSelection.RP-1303.PDO-18786.bam 4846685904 BAM aligned CPTAC3 3eca7225-1860-4f9a-9ce4-56488aaffd20 a3dfd3370f3416b63564657217a685aa {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.Targeted.T.hg38 C3L-01032 PDA Targeted_Sequencing tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_targetedsequencing_gdc_realn.bam 6929108652 BAM harmonized CPTAC3 ae1f69ba-fd3f-4e13-9b35-45da1f05b555 efc7937dd955a0f266a2684382de7c1c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.WGS.T C3L-01032 PDA WGS tumor CPT0170510026 CPT0170510026.WholeGenome.RP-1303.bam 65030423125 BAM aligned CPTAC3 cd756237-e800-4591-a9f5-e23142047d4b 91cacd2ceb0bf819b2a9a70e671ff29f {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.WGS.T.hg38 C3L-01032 PDA WGS tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_wgs_gdc_realn.bam 95856631733 BAM harmonized CPTAC3 aeb6c92c-5a7b-4439-b74d-b2c0fba9d359 c38c190e4a26b47361ecb5f0eef5c96c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.WXS.T C3L-01032 PDA WXS tumor CPT0170510026 CPT0170510026.WholeExome.RP-1303.bam 45869354525 BAM aligned CPTAC3 b37b103a-d2b2-45a4-86f2-b26464796cfb 4679ab3cbdaef3d21174352ca48f7440 {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.DUP_b3813d23.WXS.T.hg38 C3L-01032 PDA WXS tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_wxs_gdc_realn.bam 63667596295 BAM harmonized CPTAC3 e31e9424-a0b1-41c1-b75c-f3af979cc6f0 438e2c980054b4a65e3528fa4c5f954c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01032.miRNA-Seq.S5_L002_R1.T C3L-01032 PDA miRNA-Seq tumor CPT0170510016 190108_UNC31-K00269_0176_AHYGLVBBXX_ACAGTG_S5_L002_R1_001.unaln.bam 202131610 BAM S5_L002_R1 unaligned CPTAC3 97f69125-efcc-4e5a-9416-5510fff2fd5a 8522ffb627d0623e984b028cca8d2a55 {"aliquot_tag": "ALQ_98ac6ee0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01032.miRNA-Seq.T.hg38 C3L-01032 PDA miRNA-Seq tumor CPT0170510016 89b8448a-02ed-45c9-9838-b41e58a9dfbe_mirnaseq_gdc_realn.bam 223690190 BAM harmonized CPTAC3 532ec148-d2c3-42df-8d24-b9a4a378fb83 041f9c1c038cc4a0b7866e5014d68830 {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor"} -C3L-01032.RNA-Seq.chimeric.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.chimeric.gdc_realn.bam 23880671 BAM chimeric harmonized CPTAC3 e908fecf-8666-4795-b2f6-655b6c20e2a0 77a7bed59ae28d41102bded1f6b1bcbc {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor"} -C3L-01032.RNA-Seq.genomic.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.genomic.gdc_realn.bam 17036357259 BAM genomic harmonized CPTAC3 435b8294-0b07-4ee7-a327-0b9780e9212d 70c99b79aad0bff32cdaad40e35a2088 {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor"} -C3L-01032.RNA-Seq.S3_L001_R1.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4897431197 FASTQ S3_L001_R1 unaligned CPTAC3 7a970896-a786-4466-8b48-f0fc47eb3573 9b6ddcb70a653398f6933d4ba2185b9e {"aliquot_tag": "ALQ_98ac6ee0", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01032.RNA-Seq.S3_L001_R2.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 5416472857 FASTQ S3_L001_R2 unaligned CPTAC3 178f804a-0edc-4761-9125-5104b06a2443 308e5b22074d74b762d68cc3523e63da {"aliquot_tag": "ALQ_98ac6ee0", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01032.RNA-Seq.transcriptome.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.transcriptome.gdc_realn.bam 11875234210 BAM transcriptome harmonized CPTAC3 54a5d162-6269-4b2b-a882-b1578b1ee6b9 656c51283fa8df3364c6e33b89b0e81f {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor"} -C3L-01032.WGS.N C3L-01032 PDA WGS blood_normal CPT0167270002 CPT0167270002.WholeGenome.RP-1303.bam 59559164807 BAM aligned CPTAC3 ec689404-8366-4793-aa48-7d7faacc975f b6156467e3763b1c39238fdb86bfd9ab {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01032.WGS.N.hg38 C3L-01032 PDA WGS blood_normal CPT0167270002 39fbddfe-218a-4a59-865e-4e4d45f136f7_wgs_gdc_realn.bam 87485264872 BAM harmonized CPTAC3 fd2f7033-bbf5-4123-8239-e441e0142ef6 e1d24bcd2aa88684e95827a5c8540617 {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01032.WXS.A C3L-01032 PDA WXS tissue_normal CPT0170530038 CPT0170530038.WholeExome.RP-1303.bam 40072417441 BAM aligned CPTAC3 345637cd-f638-430c-af43-683b3ad7aff4 62ad5892185785e4e45ee1529a7402d7 {"aliquot_tag": "ALQ_37e27205", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01032.WXS.N C3L-01032 PDA WXS blood_normal CPT0167270002 CPT0167270002.WholeExome.RP-1303.bam 29254406550 BAM aligned CPTAC3 6f5110f3-ee1b-4870-846a-e4a07daaf8c7 7a98e97bea7a0b25e892afd9bb57eec9 {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01032.WXS.N.hg38 C3L-01032 PDA WXS blood_normal CPT0167270002 39fbddfe-218a-4a59-865e-4e4d45f136f7_wxs_gdc_realn.bam 39785289287 BAM harmonized CPTAC3 985e5e24-550a-4d9e-967b-108945601415 53570089d284b757275d1ab61df4aaab {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01032.WXS.T C3L-01032 PDA WXS tumor CPT0170510022 CPT0170510022.WholeExome.RP-1303.bam 60768919984 BAM aligned CPTAC3 4758f275-76bd-41b2-b57e-361d3f2006ce c2f5f95b5679db758c682621402355c1 {"aliquot_tag": "ALQ_b4ecf93a", "gdc_sample_type": "Primary Tumor"} -C3L-01033.MethArray.Green.A C3L-01033 CCRCC Methylation_Array tissue_normal CPT0170080006 204930640024_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2838755c-4fcc-4325-b639-4932a9124cc0 702329e80c15ebbd01eadfb785908458 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01033.MethArray.Green.T C3L-01033 CCRCC Methylation_Array tumor CPT0170070006 203219670117_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c3c45cb5-bf4b-400f-8066-8bef2305bc3d fe98a1d6bfc517cd89b8d5e32a1634d2 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor"} -C3L-01033.MethArray.Red.A C3L-01033 CCRCC Methylation_Array tissue_normal CPT0170080006 204930640024_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 83303f71-605d-4728-8896-a1bc1b170493 4e38f9731ec292b3792e0a0aaff70c94 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01033.MethArray.Red.T C3L-01033 CCRCC Methylation_Array tumor CPT0170070006 203219670117_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 72ccf6d5-df17-4ed4-8b87-b4f8111d1b10 a35f5f79c831c40816b23bc24da0ff8f {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor"} -C3L-01033.miRNA-Seq.S1_L004_R1.T C3L-01033 CCRCC miRNA-Seq tumor CPT0170070009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L004_R1_001.unaln.bam 180494762 BAM S1_L004_R1 unaligned CPTAC3 ae1f5daf-b9de-413f-a7ab-b43744eb7076 20a4192b9759a32fac43129e31f7b5df {"aliquot_tag": "ALQ_ce852623", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01033.miRNA-Seq.T.hg38 C3L-01033 CCRCC miRNA-Seq tumor CPT0170070009 6ee3b524-eec5-451d-b5ba-c8e7b3862ceb_mirnaseq_gdc_realn.bam 204821721 BAM harmonized CPTAC3 e598e820-da3f-4d73-bb7f-665c07693337 e02347ddf297303698f41eb11891180d {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor"} -C3L-01033.RNA-Seq.chimeric.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.chimeric.gdc_realn.bam 24375190 BAM chimeric harmonized CPTAC3 3887c181-c6ec-47a0-8ebc-bf25d516ad25 67897cd688b144f41a295ffc7ee796d9 {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor"} -C3L-01033.RNA-Seq.genomic.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.genomic.gdc_realn.bam 7121413280 BAM genomic harmonized CPTAC3 d404661f-3dbc-4573-8446-474faa57c529 ec326118c4c461ed641cfcddbeb9818f {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor"} -C3L-01033.RNA-Seq.S12_L003_R1.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R1_001.fastq.gz 2451910737 FASTQ S12_L003_R1 unaligned CPTAC3 e38b3802-04bf-4acb-a507-5398bd0c38d6 058413bfd5e42c4a39e20abda7b64583 {"aliquot_tag": "ALQ_ce852623", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01033.RNA-Seq.S12_L003_R2.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R2_001.fastq.gz 2532703481 FASTQ S12_L003_R2 unaligned CPTAC3 101f387e-adb0-41c3-b47b-697ed9e6c824 1e889409e07ca374018c18197bf13692 {"aliquot_tag": "ALQ_ce852623", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01033.RNA-Seq.transcriptome.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.transcriptome.gdc_realn.bam 4536007255 BAM transcriptome harmonized CPTAC3 a457d146-0fc1-48e0-9d07-2b94c8395fe7 4a5f62234ed37183d35d7baa7cce2778 {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor"} -C3L-01033.WGS.A C3L-01033 CCRCC WGS tissue_normal CPT0170080006 CPT0170080006.WholeGenome.RP-1303.bam 53352077053 BAM aligned CPTAC3 9d567de8-7b59-4bde-8905-de41261a16c8 dfbddb130de96bf994c9f07493309a82 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01033.WGS.A.hg38 C3L-01033 CCRCC WGS tissue_normal CPT0170080006 def2791d-a9ad-4d15-bc61-270a0c65c93d_wgs_gdc_realn.bam 79050022509 BAM harmonized CPTAC3 15b580b3-c8b4-4ec9-9811-6a4b5f86547d 05d6a71a348ed27d1c7b381b464c2bbd {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01033.WGS.N C3L-01033 CCRCC WGS blood_normal CPT0167210002 CPT0167210002.WholeGenome.RP-1303.bam 55979296355 BAM aligned CPTAC3 ae674e66-66f8-41ae-ba48-f8ed10b21000 f7f76364427f4d5e8b8cf5feea20f669 {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal"} -C3L-01033.WGS.N.hg38 C3L-01033 CCRCC WGS blood_normal CPT0167210002 60dcb85e-983c-4697-ac38-d4cd8052dc7c_wgs_gdc_realn.bam 80065490022 BAM harmonized CPTAC3 04bcb590-fb18-4a6f-a08d-3c16b32f07ec 046b8d72c1e0eca707e30efa5bb7a976 {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal"} -C3L-01033.WGS.T C3L-01033 CCRCC WGS tumor CPT0170070006 CPT0170070006.WholeGenome.RP-1303.bam 59525687307 BAM aligned CPTAC3 3422d03d-dc06-4d8b-970c-54bd03ebd89c d6746cd18e40f19d34d03f9d111bdcb7 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor"} -C3L-01033.WGS.T.hg38 C3L-01033 CCRCC WGS tumor CPT0170070006 a1a969cc-5503-4353-b0e5-76d3049a73fe_wgs_gdc_realn.bam 85901287477 BAM harmonized CPTAC3 15b1f404-ce56-44b5-b29a-33da9c80918c 724a298ee3a9e92d5eab0a0ed34fc8e1 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor"} -C3L-01033.WXS.A C3L-01033 CCRCC WXS tissue_normal CPT0170080006 CPT0170080006.WholeExome.RP-1303.bam 18697649766 BAM aligned CPTAC3 af65270a-2299-4b79-9670-dfe23d4a17c6 2c2dd283473fab694f917bec4a768ef6 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01033.WXS.A.hg38 C3L-01033 CCRCC WXS tissue_normal CPT0170080006 def2791d-a9ad-4d15-bc61-270a0c65c93d_wxs_gdc_realn.bam 25411218094 BAM harmonized CPTAC3 c3dcd4d1-11c7-42ab-b153-4ccb0147a632 3f44924b68cd1bd5ac765ef85818c015 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01033.WXS.N C3L-01033 CCRCC WXS blood_normal CPT0167210002 CPT0167210002.WholeExome.RP-1303.bam 21265594693 BAM aligned CPTAC3 d5c23347-7734-411d-b977-2865e212e292 df5e428b95e0c39d0523dda1d4980224 {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal"} -C3L-01033.WXS.N.hg38 C3L-01033 CCRCC WXS blood_normal CPT0167210002 60dcb85e-983c-4697-ac38-d4cd8052dc7c_wxs_gdc_realn.bam 29773842604 BAM harmonized CPTAC3 dc9b34f0-38cc-4e37-ab69-37b521840441 a6ffa19748825dd9f9afb86bc8f5305a {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal"} -C3L-01033.WXS.T C3L-01033 CCRCC WXS tumor CPT0170070006 CPT0170070006.WholeExome.RP-1303.bam 24878033548 BAM aligned CPTAC3 6cb1a2ae-e31c-45f2-9e4a-9aef419ea6e1 66e4ef5e2e882ba51bd9821a334ad953 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor"} -C3L-01033.WXS.T.hg38 C3L-01033 CCRCC WXS tumor CPT0170070006 a1a969cc-5503-4353-b0e5-76d3049a73fe_wxs_gdc_realn.bam 33867502350 BAM harmonized CPTAC3 cb74367a-1056-41d6-846e-a5089e194132 b39393bfe8501b676a9b9890e8b69778 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor"} -C3L-01034.MethArray.Green.A C3L-01034 CCRCC Methylation_Array tissue_normal CPT0170170006 204930640064_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 5f300c77-ce5b-48dd-9152-21198b07af9d 9f8933c396af91d5db7870b96c57fa98 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01034.MethArray.Green.T C3L-01034 CCRCC Methylation_Array tumor CPT0170150006 203219640102_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 f9454ce6-48cb-4988-b35b-3251129e63cc 4619b5dc1ab077a1a1a18504859848de {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor"} -C3L-01034.MethArray.Red.A C3L-01034 CCRCC Methylation_Array tissue_normal CPT0170170006 204930640064_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 731fffa0-3769-4f8f-8ca2-eed59b4d93d8 995f8d61e38ee5ac2102872cd59e6d4e {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01034.MethArray.Red.T C3L-01034 CCRCC Methylation_Array tumor CPT0170150006 203219640102_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 4d6dd61f-c8c4-44f5-af6a-ac55be663715 b6efd4e976d203f12ae1e840e0c36a89 {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor"} -C3L-01034.miRNA-Seq.S43_L008_R1.T C3L-01034 CCRCC miRNA-Seq tumor CPT0170150009 190228_UNC32-K00270_0151_AHYLY3BBXX_TACAGC_S43_L008_R1_001.unaln.bam 202897670 BAM S43_L008_R1 unaligned CPTAC3 2d97c31e-2179-4a86-901d-bd5e86a1f66f 28d461d8ec28b45d4dc7cb25652703e1 {"aliquot_tag": "ALQ_7f19a6e6", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01034.miRNA-Seq.T.hg38 C3L-01034 CCRCC miRNA-Seq tumor CPT0170150009 e1781859-e635-43e6-863e-f20117458466_mirnaseq_gdc_realn.bam 222681790 BAM harmonized CPTAC3 791d25a6-6275-4cdc-9eb4-3b59e2d7c43a d246698fce6a12bef529c0984f5b4ae1 {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor"} -C3L-01034.RNA-Seq.chimeric.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.chimeric.gdc_realn.bam 93685922 BAM chimeric harmonized CPTAC3 a75d144b-8203-40c4-8fee-fa9fe3042978 0e71ff0756a6bc106bf470caebeb66ad {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor"} -C3L-01034.RNA-Seq.genomic.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.genomic.gdc_realn.bam 17660128092 BAM genomic harmonized CPTAC3 325a7a28-0498-4d38-8c5e-563eab23727d 05b117fbd53bd917d63b5802c02e578a {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor"} -C3L-01034.RNA-Seq.S21_L005_R1.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R1_001.fastq.gz 6080726118 FASTQ S21_L005_R1 unaligned CPTAC3 8c012fbf-51f4-47cc-b6f5-a7b3a12f036d 062c207b63e32d77c4bee167e3d7db8c {"aliquot_tag": "ALQ_7f19a6e6", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01034.RNA-Seq.S21_L005_R2.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R2_001.fastq.gz 6700154478 FASTQ S21_L005_R2 unaligned CPTAC3 3f9aa847-0e4b-4f04-98b6-c9ae16cc5353 a669bb7aa43354029eb425ac985980f0 {"aliquot_tag": "ALQ_7f19a6e6", "sample": "S21", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01034.RNA-Seq.transcriptome.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.transcriptome.gdc_realn.bam 14175252882 BAM transcriptome harmonized CPTAC3 1bbd4d91-5bbd-406a-8d7a-b739a6964b64 de99ccf852bb192529df8df0415ecba0 {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor"} -C3L-01034.WGS.A C3L-01034 CCRCC WGS tissue_normal CPT0170170006 CPT0170170006.WholeGenome.RP-1303.bam 57533202244 BAM aligned CPTAC3 72bd9590-888e-495a-bfc3-da45925fa3c9 7f3eb13f749c0bca659f2fd425efad2f {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01034.WGS.A.hg38 C3L-01034 CCRCC WGS tissue_normal CPT0170170006 9705577c-f81b-4343-aee5-5569cc25fa7b_wgs_gdc_realn.bam 83907377011 BAM harmonized CPTAC3 e553eb5a-0c45-4152-9d79-106a0a1ad9d3 ead8d7ebadf629defb58473dab7c30e5 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01034.WGS.N C3L-01034 CCRCC WGS blood_normal CPT0167220002 CPT0167220002.WholeGenome.RP-1303.bam 52770253632 BAM aligned CPTAC3 9d3e244b-fe48-4903-93a9-b553c18f0779 fb6d84756754cb77322b9544d517bb3c {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01034.WGS.N.hg38 C3L-01034 CCRCC WGS blood_normal CPT0167220002 f67ab883-2ab3-4021-94a9-bfed6ab9f6e0_wgs_gdc_realn.bam 77804628667 BAM harmonized CPTAC3 1a8ff0ee-dfc1-4f0a-b9c2-65cbd33fdb85 caf41340bcba0cd35afb13cafa4d4a06 {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01034.WGS.T C3L-01034 CCRCC WGS tumor CPT0170150006 CPT0170150006.WholeGenome.RP-1303.bam 51970197915 BAM aligned CPTAC3 207273ae-8a46-4e00-9290-ef62e09e1a88 7dc5edd5b6e30f34fabb2df5681e725b {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor"} -C3L-01034.WGS.T.hg38 C3L-01034 CCRCC WGS tumor CPT0170150006 bc4ff1ea-5fe6-4e6e-9daf-9155e051b53d_wgs_gdc_realn.bam 76561470671 BAM harmonized CPTAC3 568d4b93-adf2-4dc4-9217-646936a7d76d 21c24f9df867024ebb925621ada059f1 {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor"} -C3L-01034.WXS.A C3L-01034 CCRCC WXS tissue_normal CPT0170170006 CPT0170170006.WholeExome.RP-1303.bam 19787048701 BAM aligned CPTAC3 6bc65cd0-ba7e-4c32-a5ac-ff8e5a1a2492 f0f81c90bf0fb6a28f1b483f36784924 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01034.WXS.A.hg38 C3L-01034 CCRCC WXS tissue_normal CPT0170170006 9705577c-f81b-4343-aee5-5569cc25fa7b_wxs_gdc_realn.bam 27357198044 BAM harmonized CPTAC3 cd6ee819-98f4-434d-8664-1445451f9a89 d386202bf0a0a21992d9591ecd66c7f6 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01034.WXS.N C3L-01034 CCRCC WXS blood_normal CPT0167220002 CPT0167220002.WholeExome.RP-1303.bam 26832708037 BAM aligned CPTAC3 74cfeb0c-7018-4868-a6c5-01339a3084d8 db4bb4cf99107e4fdbb55a0cb520e5ce {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01034.WXS.N.hg38 C3L-01034 CCRCC WXS blood_normal CPT0167220002 f67ab883-2ab3-4021-94a9-bfed6ab9f6e0_wxs_gdc_realn.bam 37537648155 BAM harmonized CPTAC3 f0848e58-afdc-48d2-b14d-20ad1ed8de59 3f74e5c78dc24a3eaccc3cb2aa278940 {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01034.WXS.T C3L-01034 CCRCC WXS tumor CPT0170150006 CPT0170150006.WholeExome.RP-1303.bam 22094965300 BAM aligned CPTAC3 99ca73c6-e540-4ee5-b7b7-2cf37a7d09b7 0db5a9150700b057173910b60994c774 {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor"} -C3L-01034.WXS.T.hg38 C3L-01034 CCRCC WXS tumor CPT0170150006 bc4ff1ea-5fe6-4e6e-9daf-9155e051b53d_wxs_gdc_realn.bam 30573023513 BAM harmonized CPTAC3 a4bddd92-9d39-4dad-aa6c-f94a75345674 866d79534a67ec026adbf233b9cd6d1e {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor"} -C3L-01036.MethArray.Green.A C3L-01036 PDA Methylation_Array tissue_normal CPT0123460006 203561450041_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bc270ef7-5cef-4896-b4c0-c89b728d8802 870be6896677a2fa25a5c1e94080631b {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01036.MethArray.Green.T C3L-01036 PDA Methylation_Array tumor CPT0123440006 203027390073_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c73f4fb8-6c5c-4519-9256-39bd0fbb9c06 e349d90261b254e0f92731c1eed80e96 {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor"} -C3L-01036.MethArray.Red.A C3L-01036 PDA Methylation_Array tissue_normal CPT0123460006 203561450041_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 818fa865-e939-4db7-b4c4-4ed7add0ca11 ff23ffd8c87c166e251c381955beec55 {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01036.MethArray.Red.T C3L-01036 PDA Methylation_Array tumor CPT0123440006 203027390073_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 c5e62c41-8e1c-462a-a468-cf131d7d055a bb7fb6d4ecd6fa05768fe383fb4a3827 {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor"} -C3L-01036.miRNA-Seq.S6_L001_R1.T C3L-01036 PDA miRNA-Seq tumor CPT0123440009 181119_UNC31-K00269_0165_AH27WCBBXY_CACCGG_S6_L001_R1_001.unaln.bam 221932435 BAM S6_L001_R1 unaligned CPTAC3 d4849fc1-7178-44c7-91bc-50b9e876468b a669b9600df36c407e5257705e0594de {"aliquot_tag": "ALQ_6bbc0a1c", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01036.miRNA-Seq.T.hg38 C3L-01036 PDA miRNA-Seq tumor CPT0123440009 61c7f248-2692-4cef-82c8-bdbeaf1b2c98_mirnaseq_gdc_realn.bam 241469725 BAM harmonized CPTAC3 1e2e2400-a414-438a-abba-2694928fe06e c0a2093e0883f82d8cf190f42d3863a4 {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor"} -C3L-01036.RNA-Seq.chimeric.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.chimeric.gdc_realn.bam 30434923 BAM chimeric harmonized CPTAC3 f4991f5d-168e-4233-a226-a5236a0b686e 0ffbc5294de8b5871ab4f2ada3b08eba {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor"} -C3L-01036.RNA-Seq.genomic.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.genomic.gdc_realn.bam 11521885212 BAM genomic harmonized CPTAC3 23342272-c1a8-42bb-87ea-dff20adb5831 cfa9beecd45f3d189926a17e0b490ec3 {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor"} -C3L-01036.RNA-Seq.S14_L004_R1.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4073317106 FASTQ S14_L004_R1 unaligned CPTAC3 d03e3533-6c67-48c2-a635-ec324bc96beb 885acb514a9e33553efa34223e5020e3 {"aliquot_tag": "ALQ_6bbc0a1c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01036.RNA-Seq.S14_L004_R2.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4452262134 FASTQ S14_L004_R2 unaligned CPTAC3 a78acbaf-7957-4de1-a5e0-a1bd7aad774e 200a651297b1365cfce41f111c63eebb {"aliquot_tag": "ALQ_6bbc0a1c", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01036.RNA-Seq.transcriptome.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.transcriptome.gdc_realn.bam 8524552389 BAM transcriptome harmonized CPTAC3 58e7db4c-d018-48b2-83f3-3b83b33f4363 e9783eed330d9cc58d8e480e1cb3500e {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor"} -C3L-01036.WGS.A C3L-01036 PDA WGS tissue_normal CPT0123460006 CPT0123460006.WholeGenome.RP-1303.bam 54847673805 BAM aligned CPTAC3 9b726a7c-f420-4dbd-881e-38004d05a608 4f77a7a290dd3a478e0bb200af80944d {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01036.WGS.A.hg38 C3L-01036 PDA WGS tissue_normal CPT0123460006 601671fe-f66b-46bc-b927-b10d29a4fa86_wgs_gdc_realn.bam 79993139965 BAM harmonized CPTAC3 85559fe7-569f-41bf-a1b3-cb6b4b073cff 3288901116a1ee779f60b52ce4b3c129 {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01036.WGS.N C3L-01036 PDA WGS blood_normal CPT0124820002 CPT0124820002.WholeGenome.RP-1303.bam 67375148457 BAM aligned CPTAC3 b8d13aab-5e7a-46fa-aa2f-7f5adce3c41a bb780b461b493bd1f32f7a881629e14e {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01036.WGS.N.hg38 C3L-01036 PDA WGS blood_normal CPT0124820002 4d2cc1eb-ce1b-4e8c-ad2a-480c13132e7e_wgs_gdc_realn.bam 98956825416 BAM harmonized CPTAC3 cb3fda2c-bf86-4a53-a2e1-4f6974f00aff 86ae0850bfe01f60c6682c790455fd36 {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01036.WGS.T C3L-01036 PDA WGS tumor CPT0123440006 CPT0123440006.WholeGenome.RP-1303.bam 56929679464 BAM aligned CPTAC3 b056e723-a87c-4ffa-9258-a003fb3704de 8d2bfcff76bbd7c3972c97c1020cd36b {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor"} -C3L-01036.WGS.T.hg38 C3L-01036 PDA WGS tumor CPT0123440006 9d31e864-c820-47e5-9c21-ecc35e853916_wgs_gdc_realn.bam 82858276595 BAM harmonized CPTAC3 b9bd5528-b55c-478a-9b3b-96e7b6f02e6c 2804ea273c5b8636dd3ca14c4c4cb25f {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor"} -C3L-01036.WXS.A C3L-01036 PDA WXS tissue_normal CPT0123460006 CPT0123460006.WholeExome.RP-1303.bam 29057245628 BAM aligned CPTAC3 6d3b43ff-2bb9-45f2-b208-cf19eb6a2421 ecd6b05a421fe3b7afdff95b9096d1cc {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01036.WXS.A.hg38 C3L-01036 PDA WXS tissue_normal CPT0123460006 601671fe-f66b-46bc-b927-b10d29a4fa86_wxs_gdc_realn.bam 38571251418 BAM harmonized CPTAC3 bb9d2fa6-30a7-42ca-af8f-2d4c65133085 9aba5bfe7ae7600a15c4b5c274cda88c {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01036.WXS.N C3L-01036 PDA WXS blood_normal CPT0124820002 CPT0124820002.WholeExome.RP-1303.bam 35027856377 BAM aligned CPTAC3 e7def171-c213-4139-b271-f4a850686683 47a957ddf12943bb3d9b009c47d38760 {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01036.WXS.N.hg38 C3L-01036 PDA WXS blood_normal CPT0124820002 4d2cc1eb-ce1b-4e8c-ad2a-480c13132e7e_wxs_gdc_realn.bam 47525314642 BAM harmonized CPTAC3 12528f89-6ab5-41b4-b24b-bd41c5656379 ff700a38b631fc3bb678d98ba8a3e320 {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01036.WXS.T C3L-01036 PDA WXS tumor CPT0123440006_1 CPT0123440006_1.WholeExome.RP-1303.bam 54857899614 BAM aligned CPTAC3 30cbf47d-5cd5-4279-92e1-59c8bc0982e9 f5b94ce7334684d66be13742ca85d686 {"aliquot_tag": "ALQ_20dacb9c", "gdc_sample_type": "Primary Tumor"} -C3L-01036.WXS.T C3L-01036 PDA WXS tumor CPT0123440006 CPT0123440006.WholeExome.RP-1303.bam 30086080228 BAM aligned CPTAC3 a0029efa-6a90-466c-b75a-1a49899b36e3 e54a1a8cba9faaf4434a8a03feb7443c {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor"} -C3L-01036.WXS.T.hg38 C3L-01036 PDA WXS tumor CPT0123440006_1 eb3473d6-b6f5-43ef-8950-2d1c236750ed_wxs_gdc_realn.bam 74434475492 BAM harmonized CPTAC3 5c3caa94-08b0-4499-a747-c4a9211818e6 3f0034b77cee607abee64722385b4cb6 {"aliquot_tag": "ALQ_20dacb9c", "gdc_sample_type": "Primary Tumor"} -C3L-01036.WXS.T.hg38 C3L-01036 PDA WXS tumor CPT0123440006 9d31e864-c820-47e5-9c21-ecc35e853916_wxs_gdc_realn.bam 40333856827 BAM harmonized CPTAC3 e8b8fd03-2155-4338-a5cc-7d0b0219a89a 17e8802e6b5554ec4328f3ba8fb6e066 {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor"} -C3L-01037.MethArray.Green.A C3L-01037 PDA Methylation_Array tissue_normal CPT0170260007 203561620049_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4b187400-f6c5-4bdc-b7d7-763e508d4070 82af5acff2da2e8bab84ea0d5aa81974 {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01037.MethArray.Green.T C3L-01037 PDA Methylation_Array tumor CPT0170240007 203561620077_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5ba58da8-a5b9-42db-8d9f-ef94d763900c c3cb250407779af66572f47007cce2bf {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01037.MethArray.Red.A C3L-01037 PDA Methylation_Array tissue_normal CPT0170260007 203561620049_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 3989e7d6-537c-4762-94e9-9d52e63bded8 0a32310ba2c346d7ccbf04d96b432faf {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01037.MethArray.Red.T C3L-01037 PDA Methylation_Array tumor CPT0170240007 203561620077_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 3f6096b2-5a99-4120-9a01-ee58d95b7c32 f4adf616a90565a3c62a7752d9b1e89a {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01037.miRNA-Seq.S15_L006_R1.T C3L-01037 PDA miRNA-Seq tumor CPT0170240010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTATAC_S15_L006_R1_001.unaln.bam 177920787 BAM S15_L006_R1 unaligned CPTAC3 27d6e65b-dc4f-42d8-a9ee-10e248c9fddd 87ddf10882e89485ccc0b5d8f78bc5c0 {"aliquot_tag": "ALQ_a42a741d", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01037.miRNA-Seq.T.hg38 C3L-01037 PDA miRNA-Seq tumor CPT0170240010 94cf66d7-3b58-430d-a806-a583536c2c03_mirnaseq_gdc_realn.bam 202211778 BAM harmonized CPTAC3 97d6d853-4ca0-496e-819c-c3a632002b70 d588326158afc00a9d44654ce4ef962a {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor"} -C3L-01037.RNA-Seq.chimeric.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.chimeric.gdc_realn.bam 49166409 BAM chimeric harmonized CPTAC3 22f733b1-2436-485b-b2c8-42a14f5c34b6 2d36f48f59314739f8cd61339b2473a8 {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor"} -C3L-01037.RNA-Seq.genomic.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.genomic.gdc_realn.bam 11191249005 BAM genomic harmonized CPTAC3 6c8ad372-41d8-486e-aa4b-8213f8a483e8 cc9bc2f463ad9fa06ba9385e080aba9b {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor"} -C3L-01037.RNA-Seq.S16_L004_R1.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R1_001.fastq.gz 4300142452 FASTQ S16_L004_R1 unaligned CPTAC3 0b07e406-3fb4-48ad-82cf-b98ced8f6506 c597076e4dd2080b4db4df0e391e5ba3 {"aliquot_tag": "ALQ_a42a741d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01037.RNA-Seq.S16_L004_R2.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R2_001.fastq.gz 4860566795 FASTQ S16_L004_R2 unaligned CPTAC3 5f1ee857-f891-4c24-b22a-6af08f1adf46 ac462e3786d8f531275f39ee4b3f5fd6 {"aliquot_tag": "ALQ_a42a741d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01037.RNA-Seq.transcriptome.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.transcriptome.gdc_realn.bam 11873752722 BAM transcriptome harmonized CPTAC3 ee6306cd-93ee-42dc-a39c-4a5d0476836b 49e4feeef1755c8e5a2a20d60415a74d {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor"} -C3L-01037.Targeted.T C3L-01037 PDA Targeted_Sequencing tumor CPT0170240007 CPT0170240007.CustomSelection.RP-1303.PDO-18786.bam 4768677801 BAM aligned CPTAC3 7774f8e0-2d87-4602-acb8-7629b8f9d35f 0e741d0f6427a5e2965015fbe5c6d9d5 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01037.Targeted.T.hg38 C3L-01037 PDA Targeted_Sequencing tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_targetedsequencing_gdc_realn.bam 6557863924 BAM harmonized CPTAC3 eeb23c1d-2d13-4da0-a3d3-4452350f66dd 6f6c0e2569b19cf5e50a2133b5799c8c {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01037.WGS.N C3L-01037 PDA WGS blood_normal CPT0167230002 CPT0167230002.WholeGenome.RP-1303.bam 65603979454 BAM aligned CPTAC3 a79b3eaa-89d9-43e3-bcd4-85ee7c3985ac d98389fdfbfa3e7896beb094c64c6d25 {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal"} -C3L-01037.WGS.N.hg38 C3L-01037 PDA WGS blood_normal CPT0167230002 52ceffda-2a7b-4682-a7fe-3adfa2a3c703_wgs_gdc_realn.bam 95303132482 BAM harmonized CPTAC3 c2e19429-79f8-4751-b240-8101b261fa88 544b43bd86700262d19f1da30154f813 {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal"} -C3L-01037.WGS.T C3L-01037 PDA WGS tumor CPT0170240007 CPT0170240007.WholeGenome.RP-1303.bam 69003983185 BAM aligned CPTAC3 d92ed921-3053-44c6-814e-3a601e82122c 3c7ba31812b34696b38746df6f5fa3c2 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01037.WGS.T.hg38 C3L-01037 PDA WGS tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_wgs_gdc_realn.bam 99618467523 BAM harmonized CPTAC3 31c3a193-02db-4201-b892-f875dc956fbf 8e143d3da24bbb546ac6ac8d279d1bc6 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01037.WXS.A C3L-01037 PDA WXS tissue_normal CPT0170260007 CPT0170260007.WholeExome.RP-1303.bam 21799716268 BAM aligned CPTAC3 67803cfa-225f-46a6-97fb-81618264ed35 3b149ac8e90780a05f7e2d0c1d95e601 {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01037.WXS.A.hg38 C3L-01037 PDA WXS tissue_normal CPT0170260007 6e292940-a77d-4376-971f-c09a0232f2fc_wxs_gdc_realn.bam 29606641644 BAM harmonized CPTAC3 5cd663aa-5d37-4f40-a7b6-ce8b8aaed96c 324cf68c8e41a8b96ad8bee5159ed2fd {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01037.WXS.N C3L-01037 PDA WXS blood_normal CPT0167230002 CPT0167230002.WholeExome.RP-1303.bam 27970977019 BAM aligned CPTAC3 5efb6db1-8287-418a-ad09-0850ba8208c3 d5507426b0c61c85e203e2a930748ac3 {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal"} -C3L-01037.WXS.N.hg38 C3L-01037 PDA WXS blood_normal CPT0167230002 52ceffda-2a7b-4682-a7fe-3adfa2a3c703_wxs_gdc_realn.bam 38308740048 BAM harmonized CPTAC3 d226760d-70d7-48be-a71f-14e4d5b6b65d 02008cfb97a45624a013a7f108af84bd {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal"} -C3L-01037.WXS.T C3L-01037 PDA WXS tumor CPT0170240007 CPT0170240007.WholeExome.RP-1303.bam 46916744201 BAM aligned CPTAC3 887b4768-2410-4457-9d7d-a5c5ea3348f1 d56f5ab857cc0437a879896439b68b45 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01037.WXS.T.hg38 C3L-01037 PDA WXS tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_wxs_gdc_realn.bam 64811583822 BAM harmonized CPTAC3 e9428ff1-b9b0-4d71-bac4-ad733aa7dab8 63f5435ff5f94ccd72454e2816c46b07 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor"} -C3L-01039.ANN_2a47f5ac.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.chimeric.gdc_realn.bam 207291912 BAM chimeric harmonized CPTAC3 4474ef2f-184c-49c7-8b95-bd2587088d58 e228644556ff943741cd930c1014a3ff {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.ANN_2a47f5ac.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.genomic.gdc_realn.bam 9416347355 BAM genomic harmonized CPTAC3 e5cc20a7-c3d3-42fa-bab2-844ac2c53983 ad2b61322fb7c05e9ad0820179f0c871 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.ANN_2a47f5ac.RNA-Seq.S7_L006_R1.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R1_001.fastq.gz 3261916364 FASTQ S7_L006_R1 unaligned CPTAC3 42a2998d-a333-4029-a3bb-140902ba6638 90fa6a68d5808cfb203a1c6e33c3b649 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01039.ANN_2a47f5ac.RNA-Seq.S7_L006_R2.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R2_001.fastq.gz 3658194729 FASTQ S7_L006_R2 unaligned CPTAC3 98741507-9f87-456c-8803-a2e4472b65e0 fc3204195784878fa93c30866a2d96f5 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S7", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01039.ANN_2a47f5ac.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.transcriptome.gdc_realn.bam 6871342205 BAM transcriptome harmonized CPTAC3 488d1935-f3a2-4789-adad-1ac5819b78d1 1fffba7ac010a65280948dd072953d62 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_2d2a31b5.WXS.T C3L-01039 PDA WXS tumor CPT0170340035 CPT0170340035.WholeExome.RP-1303.bam 30516946825 BAM aligned CPTAC3 df6d849d-4e3b-4746-8958-9df41e86a551 11f1206021a88e2c2ea5581ac904a541 {"aliquot_tag": "DUP_2d2a31b5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_2d2a31b5.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340035 a13a2bb2-ee5e-4079-8ac8-0f24b1a6c0be_wxs_gdc_realn.bam 41850552115 BAM harmonized CPTAC3 8a834e96-c126-45c4-91d1-a55ac01ecf42 4e8691b47d1d74a3547d1af8232d1249 {"aliquot_tag": "DUP_2d2a31b5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_2f617a4d.RNA-Seq.chimeric.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.chimeric.gdc_realn.bam 124272541 BAM chimeric harmonized CPTAC3 7adb0387-2d40-4670-93e2-37f733ba2b67 1d15063cbfde0c254bc3b07ee2e57b0d {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_2f617a4d.RNA-Seq.genomic.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.genomic.gdc_realn.bam 12433296896 BAM genomic harmonized CPTAC3 4815809e-bd63-4ff7-8704-df0e7ea3df67 7b25ef134499540c9193b02b6a760182 {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_2f617a4d.RNA-Seq.S2_L001_R1.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 3972095998 FASTQ S2_L001_R1 unaligned CPTAC3 948663db-655e-404c-bad1-9f173b3f66fb 3691eef2d97f9f8f9a0d0b16a029ef2a {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_2f617a4d.RNA-Seq.S2_L001_R2.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 4594486433 FASTQ S2_L001_R2 unaligned CPTAC3 e598b3c9-60b8-4676-88f4-cdb8890d0b65 1ac00656d1158ec823cb2b736a56f9f6 {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_2f617a4d.RNA-Seq.transcriptome.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.transcriptome.gdc_realn.bam 8799967350 BAM transcriptome harmonized CPTAC3 20d8c8a6-735a-4384-a9ff-bdd5ff8ff7ed 14ededcb44b853977124c71adbda76d2 {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_5a2d0123.WXS.T C3L-01039 PDA WXS tumor CPT0170340034 CPT0170340034.WholeExome.RP-1303.bam 27497673579 BAM aligned CPTAC3 a4a6fa41-09d6-4dcd-ba05-d45ee6b0c47f 1fcb486b82b41731a998485462d766cf {"aliquot_tag": "DUP_5a2d0123", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_5a2d0123.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340034 eaffb165-64c1-40c2-a368-9a6791c8a11d_wxs_gdc_realn.bam 37717698204 BAM harmonized CPTAC3 d1bc5688-1af4-49ca-9b19-cad9a7cdc45c c33f4057fa14ddfd1dcbe506913279c6 {"aliquot_tag": "DUP_5a2d0123", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_5a321a60.WXS.N C3L-01039 PDA WXS blood_normal CPT0167240002 CPT0167240002.WholeExome.RP-1303.bam 26241879069 BAM aligned CPTAC3 3fb2c2c7-ea70-408c-aacb-964a08477bf5 d5087319fab0561f73f6436e1b464a68 {"aliquot_tag": "DUP_5a321a60", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-01039.DUP_5a321a60.WXS.N.hg38 C3L-01039 PDA WXS blood_normal CPT0167240002 e1e83029-f44d-49b3-9c90-9b7b42934974_wxs_gdc_realn.bam 36998045601 BAM harmonized CPTAC3 3d9d35d6-5d4c-4585-bdd9-7fd46867519f 86baa17e36813663f7245cb4dc9abad9 {"aliquot_tag": "DUP_5a321a60", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-01039.DUP_626ba772.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.chimeric.gdc_realn.bam 499986198 BAM chimeric harmonized CPTAC3 ec6fcf79-fa9b-4c3f-9c19-3bc0066468c3 d7038b7a2d72c8b09e394aed5c140297 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_626ba772.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.genomic.gdc_realn.bam 11620625604 BAM genomic harmonized CPTAC3 8fe59329-7913-4b64-a043-babfb59db171 6df43e6791cca593130944ee10b3bf62 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_626ba772.RNA-Seq.S26_L008_R1.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R1_001.fastq.gz 4555787969 FASTQ S26_L008_R1 unaligned CPTAC3 5d248abd-d856-44e6-a1ef-9f1ef862b4c3 d572667b4b546670fe6f373138b0df39 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_626ba772.RNA-Seq.S26_L008_R2.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R2_001.fastq.gz 5082040632 FASTQ S26_L008_R2 unaligned CPTAC3 388511d0-bfc8-402d-9559-93dbd45bbbf9 2bbc0f604abf2ce26fcb5e654d3a8d54 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S26", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_626ba772.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.transcriptome.gdc_realn.bam 12516431251 BAM transcriptome harmonized CPTAC3 2cea3948-55f8-445d-aa45-7a95fdc4dd3d 80353a011c1c05441470d70d115dbc15 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_b423600f.WXS.T C3L-01039 PDA WXS tumor CPT0170340036 CPT0170340036.WholeExome.RP-1303.bam 22556838103 BAM aligned CPTAC3 2d3cd8f9-8839-4079-b317-662471472b13 b4872754d55a0c09b1cc10fb8766aaa2 {"aliquot_tag": "DUP_b423600f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_b423600f.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340036 7c37f754-0d9c-4a21-a84c-38978e8f57a4_wxs_gdc_realn.bam 30465875706 BAM harmonized CPTAC3 cb8ecc77-fd9d-439b-b0ab-ae2a0450768d 3b835c0dc3c6fdcd74dd9beadcf6cfa9 {"aliquot_tag": "DUP_b423600f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_b6682bf7.RNA-Seq.chimeric.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.chimeric.gdc_realn.bam 42451664 BAM chimeric harmonized CPTAC3 55988630-c1da-4993-bcea-f420fe12da24 0d7d096050ee7b514bf9dc8a65a92cae {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_b6682bf7.RNA-Seq.genomic.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.genomic.gdc_realn.bam 21240819041 BAM genomic harmonized CPTAC3 7db42090-b0b4-4f50-bfc7-f779c5e651ec 8119707e4848d312610cb19ca77cbbd0 {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_b6682bf7.RNA-Seq.S28_L008_R1.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R1_001.fastq.gz 4342609058 FASTQ S28_L008_R1 unaligned CPTAC3 92607562-3a29-4eed-8216-6a50a98744d8 8e04e79ba528fa0c3abe55850d35ab7b {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_b6682bf7.RNA-Seq.S28_L008_R2.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R2_001.fastq.gz 5183019633 FASTQ S28_L008_R2 unaligned CPTAC3 6f553b66-19ae-4806-9119-d1754ea0631e 749286eec5118d2b9ec33f1e6dd1575d {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S28", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_b6682bf7.RNA-Seq.transcriptome.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.transcriptome.gdc_realn.bam 11772859789 BAM transcriptome harmonized CPTAC3 e6b85898-0b14-47fb-83a6-bb06cbd453fe c7283b111797dffe064c0c3ef8ef1e75 {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01039.DUP_fc0f32d1.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.chimeric.gdc_realn.bam 249298102 BAM chimeric harmonized CPTAC3 5e604064-378e-4c48-a083-be60e05f56cf ad95f8c3f2c87aa7c81d206b7756bd86 {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_fc0f32d1.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.genomic.gdc_realn.bam 9440433214 BAM genomic harmonized CPTAC3 5bd7420d-f3ec-44c0-9b31-e32b25cce299 56bec64de3c825b6b539a051215df87e {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_fc0f32d1.RNA-Seq.S3_L001_R1.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 3699419632 FASTQ S3_L001_R1 unaligned CPTAC3 4c40895f-fc34-4160-836f-3aac7e1442ce 40d10a04e15ca2783b63f5389eadc04a {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_fc0f32d1.RNA-Seq.S3_L001_R2.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 4183122327 FASTQ S3_L001_R2 unaligned CPTAC3 2d98122a-4dd8-47f4-b5e1-56599339abb5 fe4c422b6b78796ec272a0080ec13505 {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01039.DUP_fc0f32d1.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.transcriptome.gdc_realn.bam 9029569895 BAM transcriptome harmonized CPTAC3 687f0583-b55d-49dd-a916-5b7ff04e6563 dec58bc1def552a275f433bcdaa4d5fb {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-01040.MethArray.Green.T C3L-01040 GBM Methylation_Array tumor CPT0171580011 203027390028_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7561727f-2db5-4d54-9e80-3dbec1e10bd6 38257262072b97dc7e7eae8db1206955 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor"} -C3L-01040.MethArray.Red.T C3L-01040 GBM Methylation_Array tumor CPT0171580011 203027390028_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 ff017231-75df-49ff-a006-59a6d68b665d b6e358cfd565bc881e7c3e9f03e38ad9 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor"} -C3L-01040.miRNA-Seq.S44_L002_R1.T C3L-01040 GBM miRNA-Seq tumor CPT0171580014 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 276089687 BAM S44_L002_R1 unaligned CPTAC3 81cef73b-464c-4fda-ba9f-d4300b045a3b 1014fa18be9388a12bcdc0f8b8503cd1 {"aliquot_tag": "ALQ_ddc56609", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01040.miRNA-Seq.T.hg38 C3L-01040 GBM miRNA-Seq tumor CPT0171580014 9b5c6c8d-687c-4ffb-b2a7-acd3bddafab5_mirnaseq_gdc_realn.bam 311212639 BAM harmonized CPTAC3 b4fc18c5-8c94-413a-bb7a-1033dbbe55b6 cae01bccea351997e5f29efb0193fc42 {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor"} -C3L-01040.RNA-Seq.chimeric.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.chimeric.gdc_realn.bam 30312050 BAM chimeric harmonized CPTAC3 c286d70d-80ab-4011-b72b-1ca10ac0595b ffd18856d82ed2cab83a3ed6512ea1cd {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor"} -C3L-01040.RNA-Seq.genomic.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.genomic.gdc_realn.bam 7289994249 BAM genomic harmonized CPTAC3 1a437fda-91bc-4bcb-8896-37243fe041c3 8b366375b0402434360cf06e53876512 {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor"} -C3L-01040.RNA-Seq.S4_L007_R1.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3363074490 FASTQ S4_L007_R1 unaligned CPTAC3 c8a6c392-49e3-4c4f-8713-3c6d44123580 e418a2487af982eec5356b237c0a0513 {"aliquot_tag": "ALQ_ddc56609", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01040.RNA-Seq.S4_L007_R2.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3630546908 FASTQ S4_L007_R2 unaligned CPTAC3 ff922fb1-2b12-4723-ad48-e33ab23fdbab 44c68228bc8a94bc35068b70c642058e {"aliquot_tag": "ALQ_ddc56609", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01040.RNA-Seq.transcriptome.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.transcriptome.gdc_realn.bam 8024284595 BAM transcriptome harmonized CPTAC3 c019e3db-d405-446b-b77b-67138c367aca 27422530be51d4daed1000ecaceff666 {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor"} -C3L-01040.WGS.N C3L-01040 GBM WGS blood_normal CPT0171540002 CPT0171540002.WholeGenome.RP-1303.bam 60117320334 BAM aligned CPTAC3 aeedc25a-2e51-4a78-8ef3-f84eabeb3126 1f4ede43087665746c76cc2b5ac97089 {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01040.WGS.N.hg38 C3L-01040 GBM WGS blood_normal CPT0171540002 30d0d5fe-c267-4b3a-b5a0-b634438c5f22_wgs_gdc_realn.bam 88428000831 BAM harmonized CPTAC3 3c45f433-c594-4e0f-90e0-e7533a606720 72dea06187f1710a77e53b7c43b58497 {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01040.WGS.T C3L-01040 GBM WGS tumor CPT0171580011 CPT0171580011.WholeGenome.RP-1303.bam 69153051054 BAM aligned CPTAC3 64826a79-9148-4509-9a22-1bf1b5867b92 93c9c7ef01b9ce502b34b3da4ed6cf7f {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor"} -C3L-01040.WGS.T.hg38 C3L-01040 GBM WGS tumor CPT0171580011 82659d5a-a5f5-43bd-86ed-b64dcc4d4503_wgs_gdc_realn.bam 100556072773 BAM harmonized CPTAC3 4ac3b5d9-b876-4575-80ac-d915973981de f3a7b06f5be794fd0ef06febfdc7cf98 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor"} -C3L-01040.WXS.N C3L-01040 GBM WXS blood_normal CPT0171540002 CPT0171540002.WholeExome.RP-1303.bam 25395481075 BAM aligned CPTAC3 03eb9141-6b98-49f3-a0e2-0697a80c96a4 8b49956fc28380605aff72f7d70112bb {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01040.WXS.N.hg38 C3L-01040 GBM WXS blood_normal CPT0171540002 30d0d5fe-c267-4b3a-b5a0-b634438c5f22_wxs_gdc_realn.bam 33852424105 BAM harmonized CPTAC3 d00be458-3366-43f0-a538-ba8c4e4125e4 26695577f86451ec2b08e3dd702e4ebb {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01040.WXS.T C3L-01040 GBM WXS tumor CPT0171580011 CPT0171580011.WholeExome.RP-1303.bam 44377338423 BAM aligned CPTAC3 c85bc39c-b252-4e73-8f4b-a3cc50f1d8ce 350bdeb2d6c8ab959da78420ba097cea {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor"} -C3L-01040.WXS.T.hg38 C3L-01040 GBM WXS tumor CPT0171580011 82659d5a-a5f5-43bd-86ed-b64dcc4d4503_wxs_gdc_realn.bam 61052820347 BAM harmonized CPTAC3 6414ef56-04b4-4628-b074-9a4e9f1578c5 d0cc21d881ed47256c0c2233d47ed061 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor"} -C3L-01043.MethArray.Green.T C3L-01043 GBM Methylation_Array tumor CPT0127420006 203027390040_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 f8529195-9b9d-4300-8d64-84e154b0e229 c6b637b7e98398f9d7d38a56ccd2dc8f {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor"} -C3L-01043.MethArray.Red.T C3L-01043 GBM Methylation_Array tumor CPT0127420006 203027390040_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 3563f0ec-364e-4ba9-8a7b-8ca9476835bb 044f1e861914d0764dcdf2bc41052aea {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor"} -C3L-01043.miRNA-Seq.S44_L002_R1.T C3L-01043 GBM miRNA-Seq tumor CPT0127420009 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 242251931 BAM S44_L002_R1 unaligned CPTAC3 c73a90b5-7d20-4ef1-ac2c-f02707e080c6 df9121f79f9997cb323357fad8274c86 {"aliquot_tag": "ALQ_10b3dbaf", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01043.miRNA-Seq.T.hg38 C3L-01043 GBM miRNA-Seq tumor CPT0127420009 54f04b84-723b-444e-a180-46cb20c66670_mirnaseq_gdc_realn.bam 270837958 BAM harmonized CPTAC3 48895769-328c-4c55-9fb7-a72c16cb40ce 4ebdfe6d57781f5ba30cb2a15427431f {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor"} -C3L-01043.RNA-Seq.chimeric.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.chimeric.gdc_realn.bam 137852159 BAM chimeric harmonized CPTAC3 35071519-7704-4a72-876a-013521847174 b0e15661746833239005d8b308340f28 {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor"} -C3L-01043.RNA-Seq.genomic.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.genomic.gdc_realn.bam 8515582394 BAM genomic harmonized CPTAC3 1b07260c-8e40-42cc-9aa2-fe5a5381fef4 ee3a0f1927465f7f4069c2aea051fcaa {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor"} -C3L-01043.RNA-Seq.S61_L008_R1.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R1_001.fastq.gz 3865603145 FASTQ S61_L008_R1 unaligned CPTAC3 36ad73db-0ba7-4485-9c22-3ea0b8e4e6bf 55143397b69ea49a41e7ee84f5730969 {"aliquot_tag": "ALQ_10b3dbaf", "sample": "S61", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01043.RNA-Seq.S61_L008_R2.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R2_001.fastq.gz 4224633366 FASTQ S61_L008_R2 unaligned CPTAC3 ac0dfa9c-403e-4bc5-a36a-e06c5504187a cfe41dc389b8968ccf998ccd66ea4fc0 {"aliquot_tag": "ALQ_10b3dbaf", "sample": "S61", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01043.RNA-Seq.transcriptome.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.transcriptome.gdc_realn.bam 10632696788 BAM transcriptome harmonized CPTAC3 f2cef2ea-e008-4ae3-a190-0c51eb979882 043cf9cdb957d35f0247da871df5d671 {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor"} -C3L-01043.WGS.N C3L-01043 GBM WGS blood_normal CPT0128550002 CPT0128550002.WholeGenome.RP-1303.bam 63355745989 BAM aligned CPTAC3 ddb6b503-bdde-443e-b66a-d9c91e1b125c 61a1d41ba1875e4615c54edbbf162e7a {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01043.WGS.N.hg38 C3L-01043 GBM WGS blood_normal CPT0128550002 a79dbdd5-f75c-475d-9779-9b789365a607_wgs_gdc_realn.bam 92189444626 BAM harmonized CPTAC3 44c2286d-e07c-4871-9f20-b4bcca0adba6 e2f3be0992ac9a7ce6986edf88a4cf47 {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01043.WGS.T C3L-01043 GBM WGS tumor CPT0127420006 CPT0127420006.WholeGenome.RP-1303.bam 59583257286 BAM aligned CPTAC3 b81e30d8-9983-4605-9066-22bb3ef50373 415dbbcd0cdb7a8b33ad268fc156b4eb {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor"} -C3L-01043.WGS.T.hg38 C3L-01043 GBM WGS tumor CPT0127420006 27e86e11-a91a-4a57-a421-e890ea7eced1_wgs_gdc_realn.bam 86215273880 BAM harmonized CPTAC3 37242c27-ad2c-41eb-b802-26b0a5cdcd19 c88245c4ad177b786caa71c74a7b7462 {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor"} -C3L-01043.WXS.N C3L-01043 GBM WXS blood_normal CPT0128550002 CPT0128550002.WholeExome.RP-1303.bam 22962039272 BAM aligned CPTAC3 3fc87b6d-21af-4960-bad5-a01a81b1e160 c4262a8ae7c9ce9e111a772b7e8ab7e3 {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01043.WXS.N.hg38 C3L-01043 GBM WXS blood_normal CPT0128550002 a79dbdd5-f75c-475d-9779-9b789365a607_wxs_gdc_realn.bam 30877335548 BAM harmonized CPTAC3 6542e2b4-503a-41dd-aea3-44b2a54f6cb5 e035557507e534724598cb046e4db675 {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01043.WXS.T C3L-01043 GBM WXS tumor CPT0127420006 CPT0127420006.WholeExome.RP-1303.bam 25733223786 BAM aligned CPTAC3 c6d57e50-b14e-42d8-8abc-53937dc20726 e9e51ab78610c498bff4c7121c4f5615 {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor"} -C3L-01043.WXS.T.hg38 C3L-01043 GBM WXS tumor CPT0127420006 27e86e11-a91a-4a57-a421-e890ea7eced1_wxs_gdc_realn.bam 34796094421 BAM harmonized CPTAC3 062c9841-aff4-4519-9bc9-3deab664f5ce 34e47571fd104086abb4ec93b08796b4 {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor"} -C3L-01045.MethArray.Green.T C3L-01045 GBM Methylation_Array tumor CPT0123530009 203028200034_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 59ff8d06-da8d-4b5a-9245-873e79227792 d552344208d9a75fa36b0c28700de5b1 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor"} -C3L-01045.MethArray.Red.T C3L-01045 GBM Methylation_Array tumor CPT0123530009 203028200034_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 513a03b8-9a35-4a36-8b13-25894303b9a1 6ed66217259dee42d5be46f11f5c5eda {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor"} -C3L-01045.miRNA-Seq.S42_L004_R1.T C3L-01045 GBM miRNA-Seq tumor CPT0123530006 181108_UNC31-K00269_0162_AH255GBBXY_GTCCGC_S42_L004_R1_001.unaln.bam 226873124 BAM S42_L004_R1 unaligned CPTAC3 c8282e06-79d9-4740-9329-39a350ba9142 6ba2a14d50cfe6727e00759a77697cd8 {"aliquot_tag": "ALQ_827f1838", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01045.miRNA-Seq.T.hg38 C3L-01045 GBM miRNA-Seq tumor CPT0123530006 52412cf8-e6db-4630-b01d-0e0d34b84780_mirnaseq_gdc_realn.bam 262084693 BAM harmonized CPTAC3 0e9a344a-195f-480d-8b60-4bcf8ba40140 db275f7f4fb02d638eb6bd13d737e383 {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor"} -C3L-01045.RNA-Seq.chimeric.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.chimeric.gdc_realn.bam 55852122 BAM chimeric harmonized CPTAC3 63bc410a-62a8-4f6f-b0cb-33328d4a4e5d f9453bf239177de9594130839dbe10ad {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor"} -C3L-01045.RNA-Seq.genomic.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.genomic.gdc_realn.bam 8833936145 BAM genomic harmonized CPTAC3 6b1cf0a9-cfca-45d7-ac89-d41f525f541b bbccc842394d9c95e9dae9be4cee9c61 {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor"} -C3L-01045.RNA-Seq.S14_L004_R1.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R1_001.fastq.gz 3756365950 FASTQ S14_L004_R1 unaligned CPTAC3 cf9158dd-fc4c-494a-a933-1eb497bfa401 99466af112260f9d85b0a46eada02b02 {"aliquot_tag": "ALQ_827f1838", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01045.RNA-Seq.S14_L004_R2.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R2_001.fastq.gz 3835368061 FASTQ S14_L004_R2 unaligned CPTAC3 bfc91f64-f77a-4aca-a218-bd14e6152eaa f24b68fe34c8b5123535932f9f52262a {"aliquot_tag": "ALQ_827f1838", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01045.RNA-Seq.transcriptome.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.transcriptome.gdc_realn.bam 8822593820 BAM transcriptome harmonized CPTAC3 6faa6cd7-9135-429a-85a1-f115774888af b3fe60ccd69825527a1d330158285396 {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor"} -C3L-01045.WGS.N C3L-01045 GBM WGS blood_normal CPT0124830002 CPT0124830002.WholeGenome.RP-1303.bam 56031587983 BAM aligned CPTAC3 e8bf7a9c-6b7a-4139-9b31-9b6feedfe9b6 be660084ecacdbe62fb1c8dd4ab93a8b {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal"} -C3L-01045.WGS.N.hg38 C3L-01045 GBM WGS blood_normal CPT0124830002 ba98100e-1c34-4d68-8b1a-f5f5114d6d7f_wgs_gdc_realn.bam 82160164266 BAM harmonized CPTAC3 18051194-5341-4e37-8c41-52ebb75a1c10 e5df46ddd707a9708078212aa14c1a40 {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal"} -C3L-01045.WGS.T C3L-01045 GBM WGS tumor CPT0123530009 CPT0123530009.WholeGenome.RP-1303.bam 57783207672 BAM aligned CPTAC3 8fa60afd-93ef-4252-9ce2-28fed207d6a5 78dfcae390f31d2d98ad5d7a12725399 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor"} -C3L-01045.WGS.T.hg38 C3L-01045 GBM WGS tumor CPT0123530009 b9f6bf00-d9af-4281-a9a8-e3e734cf4497_wgs_gdc_realn.bam 83135673504 BAM harmonized CPTAC3 0c2a03ad-4ae2-4b8c-9f29-38232d19a992 c7445f2ed347d4fbc79e141c5fa6b957 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor"} -C3L-01045.WXS.N C3L-01045 GBM WXS blood_normal CPT0124830002 CPT0124830002.WholeExome.RP-1303.bam 27947335750 BAM aligned CPTAC3 7e9e404a-0183-460b-af63-93c4670f297f 4e4bbf0247d700dbf70a8a501829446b {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal"} -C3L-01045.WXS.N.hg38 C3L-01045 GBM WXS blood_normal CPT0124830002 ba98100e-1c34-4d68-8b1a-f5f5114d6d7f_wxs_gdc_realn.bam 37436711004 BAM harmonized CPTAC3 a2f404c5-79a1-43c2-ac96-47681646b923 5fc57a66be88796660e57ac0418acac3 {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal"} -C3L-01045.WXS.T C3L-01045 GBM WXS tumor CPT0123530009 CPT0123530009.WholeExome.RP-1303.bam 26338867096 BAM aligned CPTAC3 7338bd83-083e-4100-9caf-f049ee5e6021 b92dadcb1d3f883a1d42e0f0406c4065 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor"} -C3L-01045.WXS.T.hg38 C3L-01045 GBM WXS tumor CPT0123530009 b9f6bf00-d9af-4281-a9a8-e3e734cf4497_wxs_gdc_realn.bam 35122766722 BAM harmonized CPTAC3 e5dc6626-57aa-4fac-8edb-150455e296bf 3b50eb0d9e243c88b305bc223d3d8a15 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor"} -C3L-01046.MethArray.Green.T C3L-01046 GBM Methylation_Array tumor CPT0127480007 203027390120_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 40f17f36-bcf5-4feb-8584-2bdca21398e4 3830e6bc1f3d88682793840eb6fd3f8c {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor"} -C3L-01046.MethArray.Red.T C3L-01046 GBM Methylation_Array tumor CPT0127480007 203027390120_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 6a7d51a6-df0c-4fea-928a-12aebbc09769 42b73a3993346ca315140ceed8139d15 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor"} -C3L-01046.miRNA-Seq.S45_L002_R1.T C3L-01046 GBM miRNA-Seq tumor CPT0127480010 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 233364755 BAM S45_L002_R1 unaligned CPTAC3 3d643f15-5359-457e-b972-b8b1afb32564 1464535623c9e8dea4db25e241cb22e1 {"aliquot_tag": "ALQ_3ac44aeb", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01046.miRNA-Seq.T.hg38 C3L-01046 GBM miRNA-Seq tumor CPT0127480010 16f58f3b-7a0a-460b-9d3d-3c4e8188c33b_mirnaseq_gdc_realn.bam 264137937 BAM harmonized CPTAC3 fe98d6a4-fd75-4175-afcd-847a1c1bcfe6 37f864197390822f44ca146af53cb008 {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor"} -C3L-01046.RNA-Seq.chimeric.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.chimeric.gdc_realn.bam 103005764 BAM chimeric harmonized CPTAC3 3b92d885-2426-4650-b63a-f7576eb17015 ee75fd209291560b0516f8d56bc0d85d {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor"} -C3L-01046.RNA-Seq.genomic.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.genomic.gdc_realn.bam 9101666864 BAM genomic harmonized CPTAC3 fba8c096-7004-4db4-98f1-e041089229cc 33513a84aece751e07a6cd2e0e55d9af {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor"} -C3L-01046.RNA-Seq.S60_L008_R1.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R1_001.fastq.gz 3915392286 FASTQ S60_L008_R1 unaligned CPTAC3 17f3f9f8-56ce-4669-bd4c-870295c951d5 415d6601e65602a38312a1bf70e73179 {"aliquot_tag": "ALQ_3ac44aeb", "sample": "S60", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01046.RNA-Seq.S60_L008_R2.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R2_001.fastq.gz 4262863355 FASTQ S60_L008_R2 unaligned CPTAC3 430cad38-35cd-4fb6-b511-eac776b17c2a a318f0b25bf6f78f9523e11692c1a5d7 {"aliquot_tag": "ALQ_3ac44aeb", "sample": "S60", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01046.RNA-Seq.transcriptome.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.transcriptome.gdc_realn.bam 10920664590 BAM transcriptome harmonized CPTAC3 f7052fcd-aba3-46e9-a846-ed2a3489fec5 4b8d5588d18aed2de742773e4872baa8 {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor"} -C3L-01046.WGS.N C3L-01046 GBM WGS blood_normal CPT0128570002 CPT0128570002.WholeGenome.RP-1303.bam 52816280424 BAM aligned CPTAC3 a03caad0-1a0c-4bf8-8b59-02b55bb142e8 9850ea7a6ca2164004835b775b863921 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01046.WGS.N.hg38 C3L-01046 GBM WGS blood_normal CPT0128570002 1cd7030a-e45b-4933-a33a-8b9695c7f05d_wgs_gdc_realn.bam 77049093776 BAM harmonized CPTAC3 ebb12c39-da23-41fa-a0a0-5acef3da13d2 056426862a51a2f27d3b834aa3a00b95 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01046.WGS.T C3L-01046 GBM WGS tumor CPT0127480007 CPT0127480007.WholeGenome.RP-1303.bam 64313443905 BAM aligned CPTAC3 518529a5-4df2-4645-a569-e7b9e0a44ad1 9f3d225b1c54d167258e065a0ce90e64 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor"} -C3L-01046.WGS.T.hg38 C3L-01046 GBM WGS tumor CPT0127480007 dde307c7-34d6-4c40-8adb-ab3d526d3d1d_wgs_gdc_realn.bam 93632121974 BAM harmonized CPTAC3 2472e1fe-6275-45b8-a0fa-d70d34f740df a35995d763d39539dbd18777e91c5b49 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor"} -C3L-01046.WXS.N C3L-01046 GBM WXS blood_normal CPT0128570002 CPT0128570002.WholeExome.RP-1303.bam 29967665044 BAM aligned CPTAC3 000f42f2-409f-4c1c-a1c4-4018044ada5e 7fc2a9436acc5a0fc9dabcfd78c621f3 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01046.WXS.N.hg38 C3L-01046 GBM WXS blood_normal CPT0128570002 1cd7030a-e45b-4933-a33a-8b9695c7f05d_wxs_gdc_realn.bam 39891340010 BAM harmonized CPTAC3 d7bba6b0-7bd3-4829-bc19-7b735f2ceb11 ea896a64bfba0ce9d47112561378d5e1 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01046.WXS.T C3L-01046 GBM WXS tumor CPT0127480007 CPT0127480007.WholeExome.RP-1303.bam 26961608410 BAM aligned CPTAC3 3cd98b30-13fa-4d6a-a371-f2bd8150994f 8113c4a44feaab086c56e0090e40ee29 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor"} -C3L-01046.WXS.T.hg38 C3L-01046 GBM WXS tumor CPT0127480007 dde307c7-34d6-4c40-8adb-ab3d526d3d1d_wxs_gdc_realn.bam 36414305538 BAM harmonized CPTAC3 026f0b65-3379-478b-8272-6df4dda40a61 990dabd03043421236e2634eeb4bc7f1 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor"} -C3L-01048.MethArray.Green.T C3L-01048 GBM Methylation_Array tumor CPT0217190006 203219650127_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4c05d423-5a8f-4310-a023-7eff292eebbd 1098829aa7eb883e7de58c2e49d20f4c {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor"} -C3L-01048.MethArray.Red.T C3L-01048 GBM Methylation_Array tumor CPT0217190006 203219650127_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 81062485-340e-4a7e-8006-ca05b23a541f 663a98a857a362c840e3b315ed8528aa {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor"} -C3L-01048.miRNA-Seq.S22_L008_R1.T C3L-01048 GBM miRNA-Seq tumor CPT0217190009 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L008_R1_001.unaln.bam 256829737 BAM S22_L008_R1 unaligned CPTAC3 be545d00-e37e-43ad-a4e5-93c875ccbf5c 8201ceaae7ede574aa29847af798c3de {"aliquot_tag": "ALQ_80ac402b", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01048.miRNA-Seq.T.hg38 C3L-01048 GBM miRNA-Seq tumor CPT0217190009 6e9382f6-62a8-4d40-8655-6dca5034c3d2_mirnaseq_gdc_realn.bam 295833382 BAM harmonized CPTAC3 94b064b1-4113-4f1a-8f01-9a2b0ae2e724 ac9ba3a3eece5ddcacceeae3f59fecb9 {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor"} -C3L-01048.RNA-Seq.chimeric.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.chimeric.gdc_realn.bam 41047462 BAM chimeric harmonized CPTAC3 890637b9-ed1f-4d2c-aaa8-f216b59b5428 30566c0c90fe03106a8a3fabc3795919 {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor"} -C3L-01048.RNA-Seq.genomic.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.genomic.gdc_realn.bam 8457256253 BAM genomic harmonized CPTAC3 55b9eeb2-9e4c-4f2c-a9cb-7462e97639a0 eae375941f4b73b4f555b809a22b9f7d {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor"} -C3L-01048.RNA-Seq.S9_L007_R1.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R1_001.fastq.gz 3999600510 FASTQ S9_L007_R1 unaligned CPTAC3 027d5266-ce0a-4a61-bcc4-5afd0b31ea6b 4956b7f1ca26616f39758340b12e6090 {"aliquot_tag": "ALQ_80ac402b", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01048.RNA-Seq.S9_L007_R2.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R2_001.fastq.gz 4137948301 FASTQ S9_L007_R2 unaligned CPTAC3 1c544c27-8c98-451e-9a9f-0027fda725f9 32ed3b01530c33f9bedc4d8322dcb80b {"aliquot_tag": "ALQ_80ac402b", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01048.RNA-Seq.transcriptome.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.transcriptome.gdc_realn.bam 9239831720 BAM transcriptome harmonized CPTAC3 f91140bf-5960-40ba-af89-4e7b8a06175f e1970e6d7d6c50de178c346560274b6b {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor"} -C3L-01048.WGS.N C3L-01048 GBM WGS blood_normal CPT0220100002 CPT0220100002.WholeGenome.RP-1303.bam 64064878335 BAM aligned CPTAC3 5de49997-9916-4e86-9452-e4b289b10023 fe50d8c56a13609c31d97813356acbd7 {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-01048.WGS.N.hg38 C3L-01048 GBM WGS blood_normal CPT0220100002 9866d68b-ff3e-47b2-9d84-30ce5a8cfdf4_wgs_gdc_realn.bam 91768712836 BAM harmonized CPTAC3 db210706-5e05-4ef3-b3e7-9d61b6338696 eaa455f10411d23aecf97b2433ce8592 {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-01048.WGS.T C3L-01048 GBM WGS tumor CPT0217190006 CPT0217190006.WholeGenome.RP-1303.bam 51428571431 BAM aligned CPTAC3 dc0430d5-c213-4dea-83b1-edcb99d0fe95 3bc7728437a6d1cf3e23aae7f56574df {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor"} -C3L-01048.WGS.T.hg38 C3L-01048 GBM WGS tumor CPT0217190006 b11600b7-18e3-46a2-9e8e-f3221be28d81_wgs_gdc_realn.bam 74059258955 BAM harmonized CPTAC3 9963a8bd-a5d7-4fb2-b085-17c47001d415 1275a262c9144046a68d12e53d543817 {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor"} -C3L-01048.WXS.N C3L-01048 GBM WXS blood_normal CPT0220100002 CPT0220100002.WholeExome.RP-1303.bam 37314648463 BAM aligned CPTAC3 7a5002e2-4867-4006-83f7-5930022cce8c 84a6f0b009d2e72ffd6dd70fee3bf0e4 {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-01048.WXS.N.hg38 C3L-01048 GBM WXS blood_normal CPT0220100002 9866d68b-ff3e-47b2-9d84-30ce5a8cfdf4_wxs_gdc_realn.bam 50682476717 BAM harmonized CPTAC3 f509f5a3-8679-4450-8a6b-9eb54a869c4e b7985051da0f5056929cacdf31997cdd {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal"} -C3L-01048.WXS.T C3L-01048 GBM WXS tumor CPT0217190006 CPT0217190006.WholeExome.RP-1303.bam 29173769305 BAM aligned CPTAC3 3b4dce75-c83a-4965-b7cb-23e482788d8e c46d7e0c9558f84ada08e32e58c49f63 {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor"} -C3L-01048.WXS.T.hg38 C3L-01048 GBM WXS tumor CPT0217190006 b11600b7-18e3-46a2-9e8e-f3221be28d81_wxs_gdc_realn.bam 40199259354 BAM harmonized CPTAC3 44d6fbd0-8502-4695-ab2d-672192e0e655 e58f01d0911f56b499d34f23ce62e971 {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor"} -C3L-01049.MethArray.Green.T C3L-01049 GBM Methylation_Array tumor CPT0217430011 203219670147_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b669f22e-3552-44d9-9498-f9cec6480849 9168db8f2616644027e623ea9843964d {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor"} -C3L-01049.MethArray.Red.T C3L-01049 GBM Methylation_Array tumor CPT0217430011 203219670147_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 9b9ae1a4-c1d8-47dc-abf5-988f9454141d 219f360897defcdcda1b4e8e84426c72 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor"} -C3L-01049.miRNA-Seq.S23_L008_R1.T C3L-01049 GBM miRNA-Seq tumor CPT0217430014 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L008_R1_001.unaln.bam 333071684 BAM S23_L008_R1 unaligned CPTAC3 6ea23d36-8a17-42f7-9688-eff19f71602b 97ff17e95b09cc1e3ab6700438813271 {"aliquot_tag": "ALQ_fd7b84c5", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01049.miRNA-Seq.T.hg38 C3L-01049 GBM miRNA-Seq tumor CPT0217430014 1d611dfb-8fc5-45f5-a9a9-784c88828539_mirnaseq_gdc_realn.bam 372486917 BAM harmonized CPTAC3 3e18b753-091b-4411-9a60-523b280d07fc 0d2df50b223ddfbbdca4d2ca44fbdd79 {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor"} -C3L-01049.RNA-Seq.chimeric.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.chimeric.gdc_realn.bam 31309129 BAM chimeric harmonized CPTAC3 f69d9d0e-eab0-4cf8-b7ce-a562fa1d0416 da8828d5e37994491475de7b95d2f078 {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor"} -C3L-01049.RNA-Seq.genomic.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.genomic.gdc_realn.bam 7826198976 BAM genomic harmonized CPTAC3 46d91cb7-b2e5-4719-b7e0-1bc465bab407 2ee21bad4e28297bd714f9dad956d41e {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor"} -C3L-01049.RNA-Seq.S11_L007_R1.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R1_001.fastq.gz 3664572534 FASTQ S11_L007_R1 unaligned CPTAC3 61ee058b-1a61-4d46-baf4-be7ade0664e7 fbc77c4f9b23efeed20fc12d1610b92a {"aliquot_tag": "ALQ_fd7b84c5", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01049.RNA-Seq.S11_L007_R2.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R2_001.fastq.gz 3808741372 FASTQ S11_L007_R2 unaligned CPTAC3 c72c7346-e3c9-48f2-be17-8a9c7fc649de 154f6606ec2a44d48e19306c4b6c9c51 {"aliquot_tag": "ALQ_fd7b84c5", "sample": "S11", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01049.RNA-Seq.transcriptome.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.transcriptome.gdc_realn.bam 10768110944 BAM transcriptome harmonized CPTAC3 093e1a07-81d6-48f4-833c-34587b0c5e2d 2bc61a3a8352f29f96bb1f9ab9a753b0 {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor"} -C3L-01049.WGS.N C3L-01049 GBM WGS blood_normal CPT0220120002 CPT0220120002.WholeGenome.RP-1303.bam 62955891917 BAM aligned CPTAC3 d118e7e1-8e32-48d8-a87a-7a1a3e38247c 7caf47880e139d4f656adb4eb3727376 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal"} -C3L-01049.WGS.N.hg38 C3L-01049 GBM WGS blood_normal CPT0220120002 6166ddc6-db74-45c1-a5cc-d3514c4ae107_wgs_gdc_realn.bam 90939929389 BAM harmonized CPTAC3 c8e3c1a8-998c-4c1e-a46d-a79800017fdb 2851a6e9eb3b91992c8e2f7b39827940 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal"} -C3L-01049.WGS.T C3L-01049 GBM WGS tumor CPT0217430011 CPT0217430011.WholeGenome.RP-1303.bam 69756927253 BAM aligned CPTAC3 cd745430-8d00-4f45-a932-fba22187db9e 6c374450b536e0d8827050d4f4b36547 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor"} -C3L-01049.WGS.T.hg38 C3L-01049 GBM WGS tumor CPT0217430011 9ebeb445-d973-4f09-b7eb-4e09e0c05e63_wgs_gdc_realn.bam 101047614346 BAM harmonized CPTAC3 b869642c-ccbd-4df0-aad7-73f165487f79 71e255b8f1750003368bda595baaaac0 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor"} -C3L-01049.WXS.N C3L-01049 GBM WXS blood_normal CPT0220120002 CPT0220120002.WholeExome.RP-1303.bam 25172472327 BAM aligned CPTAC3 acbdcbc5-ce0e-4fd9-a84c-0e6cff22a9cc 69bc12681a0c514893b1650b68476ae6 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal"} -C3L-01049.WXS.N.hg38 C3L-01049 GBM WXS blood_normal CPT0220120002 6166ddc6-db74-45c1-a5cc-d3514c4ae107_wxs_gdc_realn.bam 34210449752 BAM harmonized CPTAC3 b761d324-20aa-40d8-a667-510741906e7a fec34d2e4dbd1b618f1992d4e02fe487 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal"} -C3L-01049.WXS.T C3L-01049 GBM WXS tumor CPT0217430011 CPT0217430011.WholeExome.RP-1303.bam 25768843041 BAM aligned CPTAC3 6f83a67d-4cc1-4e37-9107-a216a7a37c39 a786ff49fadc1b0789ce57f68c1ca086 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor"} -C3L-01049.WXS.T.hg38 C3L-01049 GBM WXS tumor CPT0217430011 9ebeb445-d973-4f09-b7eb-4e09e0c05e63_wxs_gdc_realn.bam 35881460709 BAM harmonized CPTAC3 b8f6b182-1b4f-467f-899a-f60d73542567 b2da6f0dc9e7e20736943d196392335c {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor"} -C3L-01051.MethArray.Green.A C3L-01051 PDA Methylation_Array tissue_normal CPT0123670006 203273630258_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e132aa1f-4539-4cc5-a679-b3e49bfb1385 8c6dad085cbea0f4f8e7799fcb720cde {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01051.MethArray.Green.T C3L-01051 PDA Methylation_Array tumor CPT0123650009 203028200104_R03C01_Grn.idat 13676238 IDAT Green NA CPTAC3 54a7a2b7-ff65-4806-a9eb-9504e4eff526 42df3bed4224176f20c174439ecdb840 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor"} -C3L-01051.MethArray.Red.A C3L-01051 PDA Methylation_Array tissue_normal CPT0123670006 203273630258_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 d55c7c51-5191-49bc-8d45-3e60bbf63d92 248da51e256738248b3656085ef758e9 {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01051.MethArray.Red.T C3L-01051 PDA Methylation_Array tumor CPT0123650009 203028200104_R03C01_Red.idat 13676238 IDAT Red NA CPTAC3 ae553b2b-bec3-4beb-b56b-1b85dbb12a5f e42abeb601a1043c49f0f707321c7295 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor"} -C3L-01051.miRNA-Seq.S43_L004_R1.T C3L-01051 PDA miRNA-Seq tumor CPT0123650006 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L004_R1_001.unaln.bam 237231392 BAM S43_L004_R1 unaligned CPTAC3 e2e76107-273e-44c7-ad07-f4a2912ccbd2 fe2d13778aff8f71cdf05bca25656f98 {"aliquot_tag": "ALQ_8bab9f36", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01051.miRNA-Seq.T.hg38 C3L-01051 PDA miRNA-Seq tumor CPT0123650006 d2c5b88f-3965-46b5-af3f-e3bfbb3a22f0_mirnaseq_gdc_realn.bam 264400126 BAM harmonized CPTAC3 6bcd9512-1f8c-4c94-baa2-0fe0b7d6bf3b c104d24918e27458a3275342aab672ec {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor"} -C3L-01051.RNA-Seq.chimeric.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.chimeric.gdc_realn.bam 58388385 BAM chimeric harmonized CPTAC3 1519019a-d955-4bb4-a230-400976db64cb fc3bced24516077a8f35a9b5562dfd7c {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor"} -C3L-01051.RNA-Seq.genomic.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.genomic.gdc_realn.bam 9011577543 BAM genomic harmonized CPTAC3 4763601c-e7be-4879-9961-9ff2a6591b87 a02c6bfaea65f83afc29bf8f9da8451b {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor"} -C3L-01051.RNA-Seq.S9_L003_R1.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R1_001.fastq.gz 3851822716 FASTQ S9_L003_R1 unaligned CPTAC3 ebe96da7-8ff0-44df-972f-a39af48988fc 458286664c4f0f037c1364bb8b123fb6 {"aliquot_tag": "ALQ_8bab9f36", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01051.RNA-Seq.S9_L003_R2.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R2_001.fastq.gz 4221160862 FASTQ S9_L003_R2 unaligned CPTAC3 f960daa9-575a-4dbd-9361-7d39ac4d98ee 0fa6d8d5bcc1f4610c3139104243b486 {"aliquot_tag": "ALQ_8bab9f36", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01051.RNA-Seq.transcriptome.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.transcriptome.gdc_realn.bam 10910056002 BAM transcriptome harmonized CPTAC3 3f62fd10-e9e2-4e26-a06d-88cace567816 7807d6e6d009d7b5a1a77ff15483a89d {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor"} -C3L-01051.Targeted.T C3L-01051 PDA Targeted_Sequencing tumor CPT0123650009_1 CPT0123650009_1.CustomSelection.RP-1303.PDO-18786.bam 4491199262 BAM aligned CPTAC3 89fe3652-aafe-4f66-8c25-d9203156f908 178b48cdc2859dd8463f88ac24095be2 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor"} -C3L-01051.Targeted.T.hg38 C3L-01051 PDA Targeted_Sequencing tumor CPT0123650009_1 a295bcde-bfa0-492b-99ad-3fa2b7a8c6ec_targetedsequencing_gdc_realn.bam 6498004543 BAM harmonized CPTAC3 135f45bf-729a-41ef-9cb9-85b0697cf11e f62df71f3187ac1d1a1b12bde7a86b82 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor"} -C3L-01051.WGS.A C3L-01051 PDA WGS tissue_normal CPT0123670006 CPT0123670006.WholeGenome.RP-1303.bam 63839370401 BAM aligned CPTAC3 faa13175-71f3-48a3-b01f-899758fa3233 8e4fdae102fd58e1c9790a4facbcc09e {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01051.WGS.A.hg38 C3L-01051 PDA WGS tissue_normal CPT0123670006 5b317e2e-e13f-4ddf-ab07-1ae7b428336c_wgs_gdc_realn.bam 92616864491 BAM harmonized CPTAC3 ea3d3ddb-1c20-4db4-9a9f-26169ba0b67e 658f5d15b06e8829ea7dbc7ec3466810 {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01051.WGS.N C3L-01051 PDA WGS blood_normal CPT0124870002 CPT0124870002.WholeGenome.RP-1303.bam 56526700442 BAM aligned CPTAC3 03ddb2c0-de08-4c05-b2d5-ffcbdb4d0679 5a3751a47e8a85b6b119e69b416bd001 {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01051.WGS.N.hg38 C3L-01051 PDA WGS blood_normal CPT0124870002 bec76c94-3da0-4689-9357-39119f6b1418_wgs_gdc_realn.bam 83055133465 BAM harmonized CPTAC3 ccb17c28-2526-49c4-8f13-63f57a26b124 f762c0d7efe100ee718fb30488115775 {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01051.WGS.T C3L-01051 PDA WGS tumor CPT0123650009 CPT0123650009.WholeGenome.RP-1303.bam 69983458480 BAM aligned CPTAC3 3686868f-ff02-402b-ac89-327c16d17f7d 9064877922dcd977acae343f102edfb4 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor"} -C3L-01051.WGS.T.hg38 C3L-01051 PDA WGS tumor CPT0123650009 7b562d7e-e216-447d-aea0-dec192194ad4_wgs_gdc_realn.bam 102470145435 BAM harmonized CPTAC3 bf1cb6c2-acb0-440b-83b1-686aeae120b8 7073c2ba20712efee871d579ddf7e418 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor"} -C3L-01051.WXS.A C3L-01051 PDA WXS tissue_normal CPT0123670006 CPT0123670006.WholeExome.RP-1303.bam 22275115021 BAM aligned CPTAC3 fb71d9b2-017d-405e-81d2-cf523e39a3a7 add51c46a603c564d11555b87bea6c7b {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01051.WXS.A.hg38 C3L-01051 PDA WXS tissue_normal CPT0123670006 5b317e2e-e13f-4ddf-ab07-1ae7b428336c_wxs_gdc_realn.bam 30088753918 BAM harmonized CPTAC3 22697ae7-c81d-4f53-82a4-fda88d1b72f5 f7e4c73f3e414f33ff87f8be9ffa8d07 {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01051.WXS.N C3L-01051 PDA WXS blood_normal CPT0124870002 CPT0124870002.WholeExome.RP-1303.bam 45998555952 BAM aligned CPTAC3 5c55f171-9bdb-41d8-b26e-11f4bddc2bfb d75283f2550bafb5762e3ea53a00c95a {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01051.WXS.N.hg38 C3L-01051 PDA WXS blood_normal CPT0124870002 bec76c94-3da0-4689-9357-39119f6b1418_wxs_gdc_realn.bam 60540772898 BAM harmonized CPTAC3 5f451ce9-d848-4cc4-89ec-7583da6184ca 24881c9bedf4f081108ac49ac5cafc0c {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01051.WXS.T C3L-01051 PDA WXS tumor CPT0123650009_1 CPT0123650009_1.WholeExome.RP-1303.bam 64442690199 BAM aligned CPTAC3 b94944ef-3fcf-49e4-b55b-0f1d04a70162 588f331c29d0775a1d0ee0379f1cf820 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor"} -C3L-01051.WXS.T C3L-01051 PDA WXS tumor CPT0123650009 CPT0123650009.WholeExome.RP-1303.bam 37513070756 BAM aligned CPTAC3 63e61b29-84fa-436b-8319-409682698194 89ddc8f0d459e6532671b36fee8f109f {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor"} -C3L-01051.WXS.T.hg38 C3L-01051 PDA WXS tumor CPT0123650009_1 a295bcde-bfa0-492b-99ad-3fa2b7a8c6ec_wxs_gdc_realn.bam 89435623390 BAM harmonized CPTAC3 18ddcf93-bd5a-4f5b-a8a4-e000a4c6468c a54f519bddbc711fadc67f013e829765 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor"} -C3L-01051.WXS.T.hg38 C3L-01051 PDA WXS tumor CPT0123650009 7b562d7e-e216-447d-aea0-dec192194ad4_wxs_gdc_realn.bam 52145975959 BAM harmonized CPTAC3 b28b3661-1cac-4932-99f1-a2e3e688d544 d8c98696a467bf9f7ed65d54c05ce52d {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor"} -C3L-01052.MethArray.Green.A C3L-01052 PDA Methylation_Array tissue_normal CPT0123770006 203561450099_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 98b16edc-bf2a-4a3b-8d1c-ab7da728fbb1 8d7fc638813a3b211335624602733723 {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01052.MethArray.Green.T C3L-01052 PDA Methylation_Array tumor CPT0123750006 203028200101_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 539c98b6-fe9e-48ef-bf2e-f52b02051cce 8a913ff6d8415c8a7f45453e4eb7a660 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor"} -C3L-01052.MethArray.Red.A C3L-01052 PDA Methylation_Array tissue_normal CPT0123770006 203561450099_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 3f7a731e-1375-4f50-9454-c6355312daf7 f56ae63500e54545f081193d82ce4e6c {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01052.MethArray.Red.T C3L-01052 PDA Methylation_Array tumor CPT0123750006 203028200101_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 d3499a96-7f33-48dc-9837-36ce8cac375a a4bcb0b276ab5164304a085688dd6db4 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor"} -C3L-01052.miRNA-Seq.S7_L001_R1.T C3L-01052 PDA miRNA-Seq tumor CPT0123750009 181119_UNC31-K00269_0165_AH27WCBBXY_CACGAT_S7_L001_R1_001.unaln.bam 263435489 BAM S7_L001_R1 unaligned CPTAC3 dabaad35-3eb7-4bc7-b044-6527769c7727 049a001857674cfc2842b82d3d1fa55d {"aliquot_tag": "ALQ_d0485102", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01052.miRNA-Seq.T.hg38 C3L-01052 PDA miRNA-Seq tumor CPT0123750009 e30bdd9b-fb52-4072-9d55-f7ec866497c6_mirnaseq_gdc_realn.bam 291425399 BAM harmonized CPTAC3 54b65e26-16ba-4eec-86c0-3be0b363b559 c848f3091382fcbb12914d4da0caefd5 {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor"} -C3L-01052.RNA-Seq.chimeric.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.chimeric.gdc_realn.bam 27728126 BAM chimeric harmonized CPTAC3 e34e194e-40be-412d-9388-abfbe95889ae ae354ba80158db64d3639bff8cf0694d {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor"} -C3L-01052.RNA-Seq.genomic.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.genomic.gdc_realn.bam 9050051212 BAM genomic harmonized CPTAC3 57f9faeb-2682-455b-a7b6-379a23256c69 138c7c5cd6f7059987e7540867618c2f {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor"} -C3L-01052.RNA-Seq.S13_L004_R1.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3824714033 FASTQ S13_L004_R1 unaligned CPTAC3 d9a41fa8-0081-4609-92ee-7c2b2279a26e b3d6198b6165a0d8de828ce30212faa9 {"aliquot_tag": "ALQ_d0485102", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01052.RNA-Seq.S13_L004_R2.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4182715612 FASTQ S13_L004_R2 unaligned CPTAC3 04e48ed4-f66d-4f12-b305-2115e55f0c4d 4033563896912edd370c9595a6c261a8 {"aliquot_tag": "ALQ_d0485102", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01052.RNA-Seq.transcriptome.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.transcriptome.gdc_realn.bam 11593992511 BAM transcriptome harmonized CPTAC3 031c30c7-cdda-4bb3-9374-2f21e60a6636 510d3c93409345c45cc86500b8346d7c {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor"} -C3L-01052.Targeted.T C3L-01052 PDA Targeted_Sequencing tumor CPT0123750006_1 CPT0123750006_1.CustomSelection.RP-1303.PDO-18786.bam 4757345248 BAM aligned CPTAC3 2dd8da54-f233-4eee-a270-08cdbe522cda 864f930c77491330e1c5cb654335aab2 {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor"} -C3L-01052.Targeted.T.hg38 C3L-01052 PDA Targeted_Sequencing tumor CPT0123750006_1 cb7c42f5-cf99-4123-8a5d-fbdd71717020_targetedsequencing_gdc_realn.bam 6642237150 BAM harmonized CPTAC3 e6c9309a-9bae-4a8f-abf3-7d367f5852ea 50917290e701df9039c284dcf796b0a9 {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor"} -C3L-01052.WGS.A C3L-01052 PDA WGS tissue_normal CPT0123770006 CPT0123770006.WholeGenome.RP-1303.bam 56013973571 BAM aligned CPTAC3 d664a657-b1b4-4552-aad6-fd135437e86c 847bd5f35bb2c7ac2a6cf0f853e2a8ad {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01052.WGS.A.hg38 C3L-01052 PDA WGS tissue_normal CPT0123770006 e783a2a0-db2f-422a-9b25-081d2b84928c_wgs_gdc_realn.bam 81692115281 BAM harmonized CPTAC3 1733c592-12e1-4cee-8dfc-65a8057d3987 72ed58f3bfaacc8bd28974f770f94549 {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01052.WGS.N C3L-01052 PDA WGS blood_normal CPT0124880002 CPT0124880002.WholeGenome.RP-1303.bam 57347743883 BAM aligned CPTAC3 ee1bb425-42c4-419e-b7a5-f18074a85070 d63977ab2629a74ddebf3c87b24ba9b0 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01052.WGS.N.hg38 C3L-01052 PDA WGS blood_normal CPT0124880002 4db3dd84-d8b5-417e-af2c-95dc3951e5e9_wgs_gdc_realn.bam 83378423667 BAM harmonized CPTAC3 dac0b305-ab51-4275-b5cc-3a6f08e04d66 e07504314fabc3635d9fb66efacdfd42 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01052.WGS.T C3L-01052 PDA WGS tumor CPT0123750006 CPT0123750006.WholeGenome.RP-1303.bam 69355797854 BAM aligned CPTAC3 faa6a330-28ad-4398-9546-b32d24cd3797 0e33c3876c485906ff1c78095c30d939 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor"} -C3L-01052.WGS.T.hg38 C3L-01052 PDA WGS tumor CPT0123750006 8ce479b5-92c6-49e0-a431-93e66637a186_wgs_gdc_realn.bam 101691493738 BAM harmonized CPTAC3 9023f46b-f2de-4ddd-bb28-4e91ada3e15e 0d7f1ed103759d579e3f31c5fe92c5a8 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor"} -C3L-01052.WXS.A C3L-01052 PDA WXS tissue_normal CPT0123770006 CPT0123770006.WholeExome.RP-1303.bam 29206385450 BAM aligned CPTAC3 2d196ed7-3a8b-489b-b015-44dfacdf6872 cefd15eea063c270a0ce596b5bb6af3e {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01052.WXS.A.hg38 C3L-01052 PDA WXS tissue_normal CPT0123770006 e783a2a0-db2f-422a-9b25-081d2b84928c_wxs_gdc_realn.bam 40116993461 BAM harmonized CPTAC3 ac42e9d3-b139-48e3-9595-bfdcf5e31617 2356f9ed58dbc41aaf25ed3519f48af2 {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01052.WXS.N C3L-01052 PDA WXS blood_normal CPT0124880002 CPT0124880002.WholeExome.RP-1303.bam 32122942747 BAM aligned CPTAC3 4973d0d4-0321-43eb-92db-48a75e718178 b4924cf64ec03d27b1419ce4b6e45822 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01052.WXS.N.hg38 C3L-01052 PDA WXS blood_normal CPT0124880002 4db3dd84-d8b5-417e-af2c-95dc3951e5e9_wxs_gdc_realn.bam 42886290222 BAM harmonized CPTAC3 d537b6e6-a491-4bc3-9d0e-5f653e1f8fac d9d6c6496e3dbcd2b095b5a0a1ded657 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01052.WXS.T C3L-01052 PDA WXS tumor CPT0123750006_1 CPT0123750006_1.WholeExome.RP-1303.bam 53060062627 BAM aligned CPTAC3 dc8329c3-0b68-4d01-8fcd-8b44ff0081ca b341a089c2b117e81845db7f9eda8e7d {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor"} -C3L-01052.WXS.T C3L-01052 PDA WXS tumor CPT0123750006 CPT0123750006.WholeExome.RP-1303.bam 26714482973 BAM aligned CPTAC3 30d933e6-89d2-434b-bf6f-820a163eea8a e668721b404da6d8584a7d9bf39021e2 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor"} -C3L-01052.WXS.T.hg38 C3L-01052 PDA WXS tumor CPT0123750006_1 cb7c42f5-cf99-4123-8a5d-fbdd71717020_wxs_gdc_realn.bam 72178355521 BAM harmonized CPTAC3 33f1faf2-4b69-4241-8ee3-2c2fa9df5759 c6e186ecb90610bb8a2eb24d3ac392ee {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor"} -C3L-01052.WXS.T.hg38 C3L-01052 PDA WXS tumor CPT0123750006 8ce479b5-92c6-49e0-a431-93e66637a186_wxs_gdc_realn.bam 35710272737 BAM harmonized CPTAC3 4134c963-cb73-491a-bf7d-70862650105e 74e70b7105a95b08a3bceef1bca90003 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor"} -C3L-01053.MethArray.Green.A C3L-01053 PDA Methylation_Array tissue_normal CPT0123890006 203273630048_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a611fa61-956f-4c58-a490-90f80272d028 60031ef20ce85fa9ddd5eaef545da8d0 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01053.MethArray.Green.T C3L-01053 PDA Methylation_Array tumor CPT0123860009 203219720211_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2385b9a1-10a1-486f-9127-3ce11be22986 0bd572198c4d8e413d90c7f4efb17d90 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor"} -C3L-01053.MethArray.Red.A C3L-01053 PDA Methylation_Array tissue_normal CPT0123890006 203273630048_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 9a225351-469e-40f5-afd4-ac8c61011074 86b2c086c60e7760b001ca33d7864fe9 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01053.MethArray.Red.T C3L-01053 PDA Methylation_Array tumor CPT0123860009 203219720211_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 f382c2a8-6a9d-4fdd-a77e-7833bc0b93a8 9acfd73529c2f2957ed296f7dfefa01a {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor"} -C3L-01053.miRNA-Seq.S44_L004_R1.T C3L-01053 PDA miRNA-Seq tumor CPT0123860006 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L004_R1_001.unaln.bam 247830813 BAM S44_L004_R1 unaligned CPTAC3 17493bc9-781b-4e63-9401-8f5ebf85fa5b 30c9ba07d6f65acd6a40b290405f0a08 {"aliquot_tag": "ALQ_f6018496", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01053.miRNA-Seq.T.hg38 C3L-01053 PDA miRNA-Seq tumor CPT0123860006 85694142-7852-4d41-aaa5-615c4ad67ae8_mirnaseq_gdc_realn.bam 282270192 BAM harmonized CPTAC3 da7d969a-78ad-4fec-a296-248fe46a2f73 e5b5a47a3799073e08b67e876823b91f {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor"} -C3L-01053.RNA-Seq.chimeric.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.chimeric.gdc_realn.bam 59064682 BAM chimeric harmonized CPTAC3 c055be0f-965f-4e20-847a-b45aed6bc9fa 9b75338cf93e96cdadfe1ec0acf7f97b {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor"} -C3L-01053.RNA-Seq.genomic.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.genomic.gdc_realn.bam 9471469221 BAM genomic harmonized CPTAC3 e1db1cae-3065-4591-af7a-6f3434526e92 f0826e8978e3f8934257695620c197a0 {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor"} -C3L-01053.RNA-Seq.S13_L004_R1.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 4191047540 FASTQ S13_L004_R1 unaligned CPTAC3 cbb94b79-ed5d-42e8-989a-a66d75de8aa3 8799d6e44c5e1691a2a9d1b3373be2ac {"aliquot_tag": "ALQ_f6018496", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01053.RNA-Seq.S13_L004_R2.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4568537065 FASTQ S13_L004_R2 unaligned CPTAC3 020b2b6d-f3b9-4fd8-94b2-29ab99d7550d 9bc83a56bb84631d081ac86a064910a3 {"aliquot_tag": "ALQ_f6018496", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01053.RNA-Seq.transcriptome.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.transcriptome.gdc_realn.bam 12623593859 BAM transcriptome harmonized CPTAC3 2cb3e951-6aca-4118-b3df-6d057e4b8d6a 1a5d156160d6da1989bee14aa71b620e {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor"} -C3L-01053.Targeted.T C3L-01053 PDA Targeted_Sequencing tumor CPT0123860009_1 CPT0123860009_1.CustomSelection.RP-1303.PDO-18786.bam 4166814508 BAM aligned CPTAC3 9203c7c3-ba09-475e-8fd8-ef87d8de2e88 cfaf212a05f9e6eedf4ba43e42c50547 {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor"} -C3L-01053.Targeted.T.hg38 C3L-01053 PDA Targeted_Sequencing tumor CPT0123860009_1 85a52aa4-9a42-4110-9983-0b9394f9b34d_targetedsequencing_gdc_realn.bam 5819188749 BAM harmonized CPTAC3 52a71ae9-cddb-47bb-addc-1eda6e714a3b d22f3ff72354bdec330d15de17bc2ece {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor"} -C3L-01053.WGS.A C3L-01053 PDA WGS tissue_normal CPT0123890006 CPT0123890006.WholeGenome.RP-1303.bam 66671610164 BAM aligned CPTAC3 3fcb1867-978e-4d14-8cc5-c43ee2cf13d1 db40f0d5814a936d4b5f8c808da13957 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01053.WGS.A.hg38 C3L-01053 PDA WGS tissue_normal CPT0123890006 d33aa65a-2310-44fe-ba3a-b522c4f8102e_wgs_gdc_realn.bam 97699394992 BAM harmonized CPTAC3 bcb91cb8-5a48-49ac-bb38-333355e7dab0 8b53b0cfd13e0084db7f58ef38704c89 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01053.WGS.N C3L-01053 PDA WGS blood_normal CPT0124900002 CPT0124900002.WholeGenome.RP-1303.bam 54013068396 BAM aligned CPTAC3 20370486-ad56-42de-8690-705d09cc6fb1 75a1f187df041449e4ba57a8e322af33 {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal"} -C3L-01053.WGS.N.hg38 C3L-01053 PDA WGS blood_normal CPT0124900002 0cb3af1d-60e7-4998-8168-e0ea79b3d994_wgs_gdc_realn.bam 78129671363 BAM harmonized CPTAC3 6c8cd51e-aa0d-4224-9c65-47ef4156ba1b 593fb37f1d4baf4b71b933d66e934fac {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal"} -C3L-01053.WGS.T C3L-01053 PDA WGS tumor CPT0123860009 CPT0123860009.WholeGenome.RP-1303.bam 56603515635 BAM aligned CPTAC3 7e3f3f59-bca2-4839-bfa8-c37d2cbebb61 41f62e0205d1629f69687efddaa0ac95 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor"} -C3L-01053.WGS.T.hg38 C3L-01053 PDA WGS tumor CPT0123860009 6412d507-b30e-4801-a6aa-3ef3d3eccd4d_wgs_gdc_realn.bam 81981797494 BAM harmonized CPTAC3 d402d6cc-177f-4ff3-a866-7cde5f65dffc 2b6491f4465467df0e3fba37f8696ff4 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor"} -C3L-01053.WXS.A C3L-01053 PDA WXS tissue_normal CPT0123890006 CPT0123890006.WholeExome.RP-1303.bam 27600689330 BAM aligned CPTAC3 ab099de5-0800-4f2f-9638-2974dd9258bb 25a37d4696fb44c18e3bf5c90298cb84 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01053.WXS.A.hg38 C3L-01053 PDA WXS tissue_normal CPT0123890006 d33aa65a-2310-44fe-ba3a-b522c4f8102e_wxs_gdc_realn.bam 37066111501 BAM harmonized CPTAC3 bde31af1-31c7-41fc-bde1-4db5ad395ede 30186d65f2fe30c86b9cd56f6f026bea {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01053.WXS.N C3L-01053 PDA WXS blood_normal CPT0124900002 CPT0124900002.WholeExome.RP-1303.bam 27328041990 BAM aligned CPTAC3 7915a4ed-9f58-4d91-9def-d4c804943f11 268a50bb6606dfd934c824156d9b339a {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal"} -C3L-01053.WXS.N.hg38 C3L-01053 PDA WXS blood_normal CPT0124900002 0cb3af1d-60e7-4998-8168-e0ea79b3d994_wxs_gdc_realn.bam 37203908781 BAM harmonized CPTAC3 6ac77010-7aa6-4994-a6e3-d1adbb8747ed 9fbcf3de892f10ffee7496d79c218585 {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal"} -C3L-01053.WXS.T C3L-01053 PDA WXS tumor CPT0123860009_1 CPT0123860009_1.WholeExome.RP-1303.bam 51976532637 BAM aligned CPTAC3 46388278-3174-4051-859d-45baf448ef1e 004be6d4646f85793798d1b064f7de93 {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor"} -C3L-01053.WXS.T C3L-01053 PDA WXS tumor CPT0123860009 CPT0123860009.WholeExome.RP-1303.bam 24471996738 BAM aligned CPTAC3 936c36c1-d597-4a95-a69e-01c434db3625 60e7c98e9194ce68812f8be5ed07d197 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor"} -C3L-01053.WXS.T.hg38 C3L-01053 PDA WXS tumor CPT0123860009_1 85a52aa4-9a42-4110-9983-0b9394f9b34d_wxs_gdc_realn.bam 70977695583 BAM harmonized CPTAC3 5eeb3066-7ca5-4f68-a8bc-5e45437b2d41 de41c30aa3c027bc11ff9e908d35d9ea {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor"} -C3L-01053.WXS.T.hg38 C3L-01053 PDA WXS tumor CPT0123860009 6412d507-b30e-4801-a6aa-3ef3d3eccd4d_wxs_gdc_realn.bam 33071697691 BAM harmonized CPTAC3 02faeb22-ff81-4fd8-99e1-d0fc1dd15a29 b1f67f018dfbe0f3db596fca2722a5fb {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor"} -C3L-01054.MethArray.Green.A C3L-01054 PDA Methylation_Array tissue_normal CPT0124000006 203561620016_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 63b73522-ec47-4bff-9a73-ddd22812f0d7 f662f23b5eaf058f3e7e0a627adbd39a {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01054.MethArray.Green.T C3L-01054 PDA Methylation_Array tumor CPT0123990009 203219670066_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 daf415ed-645b-405d-b0ad-43d1369977d7 8c7414308bef79852e3d1fe250a29692 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor"} -C3L-01054.MethArray.Red.A C3L-01054 PDA Methylation_Array tissue_normal CPT0124000006 203561620016_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 a4c64f26-a06e-4c3a-88f6-7671daa275e4 ad5847cf82717469adbecb46f97c52a0 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01054.MethArray.Red.T C3L-01054 PDA Methylation_Array tumor CPT0123990009 203219670066_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 14446b2c-fdb7-4e5b-aa76-75d2ad61a290 7a2c36773dea804ac6c0a8aca6dd817e {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor"} -C3L-01054.miRNA-Seq.S45_L004_R1.T C3L-01054 PDA miRNA-Seq tumor CPT0123990006 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L004_R1_001.unaln.bam 186836891 BAM S45_L004_R1 unaligned CPTAC3 709f007c-0e3c-4eb2-8f05-076f621cf56b 81133c1fcc3f06a4d296cd86acae9ac8 {"aliquot_tag": "ALQ_bf0dc0e2", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01054.miRNA-Seq.T.hg38 C3L-01054 PDA miRNA-Seq tumor CPT0123990006 a08a48e3-77f1-41b7-b958-73a210dce709_mirnaseq_gdc_realn.bam 209682332 BAM harmonized CPTAC3 30a3b9f9-0b6c-49c3-abd6-47ea295a56d7 8c599614ca39c036a58cc380df0d57e0 {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor"} -C3L-01054.RNA-Seq.chimeric.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.chimeric.gdc_realn.bam 95092841 BAM chimeric harmonized CPTAC3 b04f1e73-d007-4faa-a05b-301f73a7bfb3 ec42361026f55b04b9313dfcbbd6eb4b {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor"} -C3L-01054.RNA-Seq.genomic.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.genomic.gdc_realn.bam 9726168176 BAM genomic harmonized CPTAC3 50d79e4a-806a-40f9-b963-bc65ce09369d b543118be5bdebb9ac4b5febfdd10ada {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor"} -C3L-01054.RNA-Seq.S16_L004_R1.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4313520630 FASTQ S16_L004_R1 unaligned CPTAC3 3961ed21-b1d8-4af8-9383-6254a76b29bf d68d25d7eb25da341bf946b71fe922dd {"aliquot_tag": "ALQ_bf0dc0e2", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01054.RNA-Seq.S16_L004_R2.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4704123667 FASTQ S16_L004_R2 unaligned CPTAC3 29aeea9d-75f1-4897-82d9-de9d1d348270 d08ac772ad7d394613a5ffc3fb5345fb {"aliquot_tag": "ALQ_bf0dc0e2", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01054.RNA-Seq.transcriptome.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.transcriptome.gdc_realn.bam 13180705491 BAM transcriptome harmonized CPTAC3 b2b7e424-05c2-407a-824d-6d98d3800e66 9c0dafbaf76391d57d788a43bd0884b2 {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor"} -C3L-01054.Targeted.T C3L-01054 PDA Targeted_Sequencing tumor CPT0123990009_1 CPT0123990009_1.CustomSelection.RP-1303.PDO-18786.bam 4683548101 BAM aligned CPTAC3 f399b246-a8e2-4edb-8d82-a3213d724941 91462903ddebd6e11e9fa3eadb6a9f76 {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor"} -C3L-01054.Targeted.T.hg38 C3L-01054 PDA Targeted_Sequencing tumor CPT0123990009_1 41d322a3-5478-4793-a2a7-3886912a57d6_targetedsequencing_gdc_realn.bam 6739467167 BAM harmonized CPTAC3 2d005188-75b0-4c53-8c13-33a2897f2d79 86b613e9d0f2435a09759ee12fcbb8b0 {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor"} -C3L-01054.WGS.A C3L-01054 PDA WGS tissue_normal CPT0124000006 CPT0124000006.WholeGenome.RP-1303.bam 63331231363 BAM aligned CPTAC3 fcb2c7f7-f991-456c-aa87-37839a124dae 44a020b9ed5ef2f5b64a1d45295f5bbe {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01054.WGS.A.hg38 C3L-01054 PDA WGS tissue_normal CPT0124000006 b9ae1ee8-2851-4628-8472-5788b6c984fd_wgs_gdc_realn.bam 92529719915 BAM harmonized CPTAC3 d07d850e-1e9b-40eb-9344-cd148eedfb72 f1a1e0953ddf4f4e21059dc78a64d692 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01054.WGS.N C3L-01054 PDA WGS blood_normal CPT0124920002 CPT0124920002.WholeGenome.RP-1303.bam 60710219730 BAM aligned CPTAC3 1000a332-1897-4be5-9df5-1058b3a0fe3f 200770c5f80514ee0c0dad62035540e4 {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal"} -C3L-01054.WGS.N.hg38 C3L-01054 PDA WGS blood_normal CPT0124920002 093123f9-294f-44b6-92ed-fc06a8acffc2_wgs_gdc_realn.bam 86957468038 BAM harmonized CPTAC3 bef0622e-0a80-4466-bc58-35e3b51a7185 1977a54d8fc7400b47035b2315485c0d {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal"} -C3L-01054.WGS.T C3L-01054 PDA WGS tumor CPT0123990009 CPT0123990009.WholeGenome.RP-1303.bam 62208757838 BAM aligned CPTAC3 fd096248-3b6d-45fa-815a-b6a6c5f0177b 239349c5bb152225feb9fdc84326bbd0 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor"} -C3L-01054.WGS.T.hg38 C3L-01054 PDA WGS tumor CPT0123990009 7cb00551-b12e-4311-ab3d-fc4e0d6f02ad_wgs_gdc_realn.bam 90983712726 BAM harmonized CPTAC3 62ffb2c8-68c0-40dd-b44e-4e2c48b291c8 2bee08b8476eb0dbfa32b05fe3d84002 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor"} -C3L-01054.WXS.A C3L-01054 PDA WXS tissue_normal CPT0124000006 CPT0124000006.WholeExome.RP-1303.bam 23082463206 BAM aligned CPTAC3 58b96586-298b-4f82-a4ea-40e2daff7c6b 933198db42741e47eaedae46b0860eb3 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01054.WXS.A.hg38 C3L-01054 PDA WXS tissue_normal CPT0124000006 b9ae1ee8-2851-4628-8472-5788b6c984fd_wxs_gdc_realn.bam 32407544699 BAM harmonized CPTAC3 b1a3b05d-d6c7-4bd3-a123-4b472f21011b 64f60f8e070c8f52ede10e7a893981d6 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01054.WXS.N C3L-01054 PDA WXS blood_normal CPT0124920002 CPT0124920002.WholeExome.RP-1303.bam 37885385596 BAM aligned CPTAC3 77ee8be7-5602-4bcd-94bb-21f2ae8e5905 1c4296a53621aff9e05cf416875e42be {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal"} -C3L-01054.WXS.N.hg38 C3L-01054 PDA WXS blood_normal CPT0124920002 093123f9-294f-44b6-92ed-fc06a8acffc2_wxs_gdc_realn.bam 51342868848 BAM harmonized CPTAC3 810aa2a0-d3ea-4914-9cbb-752f6610e6d8 4459178d28736d877efa53e5acefc98f {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal"} -C3L-01054.WXS.T C3L-01054 PDA WXS tumor CPT0123990009_1 CPT0123990009_1.WholeExome.RP-1303.bam 49746838948 BAM aligned CPTAC3 8b3a6ebb-4462-447a-a3e6-6551d16f3335 fb7f3417708ad18a99aae7a44a32ec03 {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor"} -C3L-01054.WXS.T C3L-01054 PDA WXS tumor CPT0123990009 CPT0123990009.WholeExome.RP-1303.bam 22316046973 BAM aligned CPTAC3 321c9829-e693-4ffc-a517-48b95a0d4c3b fdd2568eccceadbc2ca45beeedb673d4 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor"} -C3L-01054.WXS.T.hg38 C3L-01054 PDA WXS tumor CPT0123990009_1 41d322a3-5478-4793-a2a7-3886912a57d6_wxs_gdc_realn.bam 68367699957 BAM harmonized CPTAC3 d5c9f374-feb0-417d-a149-a5e5a4bcc6bd e811257a061676df51002df01d4ffa3d {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor"} -C3L-01054.WXS.T.hg38 C3L-01054 PDA WXS tumor CPT0123990009 7cb00551-b12e-4311-ab3d-fc4e0d6f02ad_wxs_gdc_realn.bam 30837311936 BAM harmonized CPTAC3 583d6f3b-97ce-44d5-94f3-8348a7cfe64f 6c85b7dce4a7747a10a1f764193d008d {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor"} -C3L-01061.MethArray.Green.T C3L-01061 GBM Methylation_Array tumor CPT0217710011 203219640068_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0a61b7ca-f718-449c-ac47-cb9d701168f9 7c2416ba0baf239d7ca9d313e7490d01 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor"} -C3L-01061.MethArray.Red.T C3L-01061 GBM Methylation_Array tumor CPT0217710011 203219640068_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 927ff2a1-01cd-45b5-98d4-ac80bcb07417 bd26c303e2b602de4223746f1c58647a {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor"} -C3L-01061.miRNA-Seq.S24_L008_R1.T C3L-01061 GBM miRNA-Seq tumor CPT0217710014 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L008_R1_001.unaln.bam 334003471 BAM S24_L008_R1 unaligned CPTAC3 fde4a079-68f5-432d-affc-1e280fe18aad 161b10d476680f21f7ad40ff2b337c81 {"aliquot_tag": "ALQ_12fa50b", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01061.miRNA-Seq.T.hg38 C3L-01061 GBM miRNA-Seq tumor CPT0217710014 096fc590-7c82-45a9-96f2-a5d1dbe37560_mirnaseq_gdc_realn.bam 381318696 BAM harmonized CPTAC3 9103f978-63c6-493a-b31f-ded6a6dfd383 1432cdebcdf3bed1464c6d91eee69d32 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor"} -C3L-01061.RNA-Seq.chimeric.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.chimeric.gdc_realn.bam 35738517 BAM chimeric harmonized CPTAC3 a8592d49-58bf-4320-90a7-458d0bc5b935 198df90d61c569abe72653df72404705 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor"} -C3L-01061.RNA-Seq.genomic.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.genomic.gdc_realn.bam 8748684141 BAM genomic harmonized CPTAC3 70bbd906-338d-4e91-ab88-318a4c4870e3 63c741ccb0dbc6b7a89b3fdca8576ca5 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor"} -C3L-01061.RNA-Seq.S10_L007_R1.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R1_001.fastq.gz 3999682712 FASTQ S10_L007_R1 unaligned CPTAC3 ffb5df03-6c34-4b8f-90cb-eb3acb1f5c5e 1da0a5547bfcd230367c2d65eab19005 {"aliquot_tag": "ALQ_12fa50b", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01061.RNA-Seq.S10_L007_R2.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R2_001.fastq.gz 4169173074 FASTQ S10_L007_R2 unaligned CPTAC3 b6dd7a62-bb7b-4b6d-b9c8-f4058ce4609e 333748ef344708ab090aec0ea16f11ae {"aliquot_tag": "ALQ_12fa50b", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01061.RNA-Seq.transcriptome.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.transcriptome.gdc_realn.bam 10506971302 BAM transcriptome harmonized CPTAC3 c4c2db40-0310-4908-8876-b7debce75ae6 2b18985e7c15e89a358dcb91f2bfd9d0 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor"} -C3L-01061.WGS.N C3L-01061 GBM WGS blood_normal CPT0220160002 CPT0220160002.WholeGenome.RP-1303.bam 63410960366 BAM aligned CPTAC3 d8b8c72d-2e59-4139-9746-21a256a8b688 61fdf1def52a7151bca9aa591abda5e0 {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01061.WGS.N.hg38 C3L-01061 GBM WGS blood_normal CPT0220160002 a33bef57-71c4-434e-8a4c-24b1ed593dd1_wgs_gdc_realn.bam 90566363330 BAM harmonized CPTAC3 5920915c-87e0-407e-a422-02d3f8803b68 0f9575294f2bffe621085626b90c3a11 {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01061.WGS.T C3L-01061 GBM WGS tumor CPT0217710011 CPT0217710011.WholeGenome.RP-1303.bam 63493272955 BAM aligned CPTAC3 e3a4cb2c-5618-442e-8b73-59784ec10c40 877a2793195ffbdd9c781cfe469e5c91 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor"} -C3L-01061.WGS.T.hg38 C3L-01061 GBM WGS tumor CPT0217710011 dff6198d-3541-426b-b894-d26b18d87c23_wgs_gdc_realn.bam 91897409662 BAM harmonized CPTAC3 c9ba1998-cf81-4dc5-afcc-a42c8dc3ab1f e38fd1db374c63ba4169e0d83ff7daa4 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor"} -C3L-01061.WXS.N C3L-01061 GBM WXS blood_normal CPT0220160002 CPT0220160002.WholeExome.RP-1303.bam 25898528106 BAM aligned CPTAC3 deff7591-9409-4f60-9f27-4ddd763fc8a8 3dee6542633120270af32372e4dba07f {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01061.WXS.N.hg38 C3L-01061 GBM WXS blood_normal CPT0220160002 a33bef57-71c4-434e-8a4c-24b1ed593dd1_wxs_gdc_realn.bam 35226033324 BAM harmonized CPTAC3 9b3f0c7a-b5b0-4a5c-b40e-303d858ed6a6 0dd8b4e03f99e59104965424ec149a35 {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01061.WXS.T C3L-01061 GBM WXS tumor CPT0217710011 CPT0217710011.WholeExome.RP-1303.bam 29621741414 BAM aligned CPTAC3 cb28d084-86fb-40f1-91e8-f7db9e0e7fe0 63c48def84921d989f8ef65f5befd9ed {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor"} -C3L-01061.WXS.T.hg38 C3L-01061 GBM WXS tumor CPT0217710011 dff6198d-3541-426b-b894-d26b18d87c23_wxs_gdc_realn.bam 41045036469 BAM harmonized CPTAC3 dc60f5d5-fa33-4c3a-87b3-11225a35871f e7b66def080d57f285cf968d428d6fc3 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor"} -C3L-01064.MethArray.Green.T C3L-01064 UCEC Methylation_Array tumor CPT0113430010 203219670147_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3b1735a5-8976-4fd5-a76d-6bab9d764a88 23e3079cd6fac67e96e012c76cdd90c5 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor"} -C3L-01064.MethArray.Red.T C3L-01064 UCEC Methylation_Array tumor CPT0113430010 203219670147_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 1bcb2750-06d0-4b20-b9ba-135877abc877 45bd52288486e8f805c4661c007e4abd {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor"} -C3L-01064.miRNA-Seq.S22_L002_R1.T C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L002_R1_001.unaln.bam 264217578 BAM S22_L002_R1 unaligned CPTAC3 05a6be11-eb40-49fb-9115-826064a9a5a6 e451c65b34491d3ac145d728ae990dfa {"aliquot_tag": "ALQ_b0abfce8", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01064.miRNA-Seq.T.hg38 C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 ff0aaa9f-d2ce-412c-b63b-d54b8e12183f_mirnaseq_gdc_realn.bam 282572116 BAM harmonized CPTAC3 8ac3cc6e-3457-48cb-a7d4-df087e11c418 576d3acaf0f270caecafa8e620f0c39e {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.chimeric.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.chimeric.gdc_realn.bam 29571147 BAM chimeric harmonized CPTAC3 37a514c4-2cdb-44ce-9004-f09ff8d27ef3 7b49232e1094321450ce489b3603bbcd {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.chimeric.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.chimeric.gdc_realn.bam 302057748 BAM chimeric harmonized CPTAC3 527e2753-cd42-4b1a-95a6-559db32f4393 5bf539154e45077f6d3cd6e70f102e82 {"aliquot_tag": "ALQ_96671a3e", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.genomic.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.genomic.gdc_realn.bam 9201880615 BAM genomic harmonized CPTAC3 156bb8a8-0c9d-4d7d-8dac-d5c2f0932603 7f817b6b25d14f1be0fd94ee65b4ac29 {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.genomic.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.genomic.gdc_realn.bam 10877720163 BAM genomic harmonized CPTAC3 f1766caf-a5a6-417a-a4e7-fdf6ad21a1bd ba8f84309af5411c5aa22c79e71e454a {"aliquot_tag": "ALQ_96671a3e", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.S18_L005_R1.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3922335259 FASTQ S18_L005_R1 unaligned CPTAC3 28100153-4171-4e1e-91d2-b0ad0baef05c 5d2a22eff38f2e1ea65e1498ef3538f2 {"aliquot_tag": "ALQ_b0abfce8", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.S18_L005_R2.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4254448836 FASTQ S18_L005_R2 unaligned CPTAC3 66b69b3d-3ab0-4b3f-834d-4413c1321080 5d42b0b30ef0631cdf4ffb66dcd56ab6 {"aliquot_tag": "ALQ_b0abfce8", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.S44_R1.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R1_001.fastq.gz 6098681542 FASTQ S44_R1 unaligned CPTAC3 37632942-0a23-4d71-95cb-eabc0462d5b9 bb84c8d0357b2c23cdd88f6666cc404c {"aliquot_tag": "ALQ_96671a3e", "sample": "S44", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.S44_R2.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R2_001.fastq.gz 6297394584 FASTQ S44_R2 unaligned CPTAC3 93e373e6-d716-4957-bb10-f4c9fb53a2f0 b44d81e584514293d1d4390b4796615f {"aliquot_tag": "ALQ_96671a3e", "sample": "S44", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.transcriptome.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.transcriptome.gdc_realn.bam 11062682128 BAM transcriptome harmonized CPTAC3 b0f3890e-03db-46c0-a227-559cea486ee4 ff0190488a935fa00a06ff87bafab542 {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor"} -C3L-01064.RNA-Seq.transcriptome.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.transcriptome.gdc_realn.bam 4527275225 BAM transcriptome harmonized CPTAC3 6d1f29c6-bda1-417b-a401-38e900cc5c00 b32da0182a1843673dd79e20e32a4559 {"aliquot_tag": "ALQ_96671a3e", "gdc_sample_type": "Primary Tumor"} -C3L-01064.WGS.N C3L-01064 UCEC WGS blood_normal CPT0114370002 CPT0114370002.WholeGenome.RP-1303.bam 55958152470 BAM aligned CPTAC3 6c503586-a88c-47d0-8741-d069acda8628 01b5c2494b48378538814bf2f0611583 {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal"} -C3L-01064.WGS.N.hg38 C3L-01064 UCEC WGS blood_normal CPT0114370002 81727297-3a76-417c-8eef-b40e0a9619eb_wgs_gdc_realn.bam 80325381252 BAM harmonized CPTAC3 fdc4ca59-46ac-4d19-a43a-6221686dba54 0c1e578f2af968f8d0b6e891cf5cdd27 {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal"} -C3L-01064.WGS.T C3L-01064 UCEC WGS tumor CPT0113430010 CPT0113430010.WholeGenome.RP-1303.bam 55036132160 BAM aligned CPTAC3 a6846445-701e-4826-a4d3-54792334d242 c46aedba383deffb9eedb39bac0b0534 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor"} -C3L-01064.WGS.T.hg38 C3L-01064 UCEC WGS tumor CPT0113430010 b8c569be-3c89-4eaa-9ce6-f138f3911575_wgs_gdc_realn.bam 81509794862 BAM harmonized CPTAC3 0bb4b939-4ae9-4d85-86f2-fe4ce24a87a1 158601e57882be7547519537fb586903 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor"} -C3L-01064.WXS.N C3L-01064 UCEC WXS blood_normal CPT0114370002 CPT0114370002.WholeExome.RP-1303.bam 26836680696 BAM aligned CPTAC3 25054e38-b8d9-45a9-866d-d92bd1b90441 c0d030ca3b57f6dc6226dd6e2ec85a95 {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal"} -C3L-01064.WXS.N.hg38 C3L-01064 UCEC WXS blood_normal CPT0114370002 81727297-3a76-417c-8eef-b40e0a9619eb_wxs_gdc_realn.bam 37167933603 BAM harmonized CPTAC3 6a5233c5-c3a7-4563-82d6-52c4baef5f7c aa0d0def1aecd88a502e411f3a2b2d0d {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal"} -C3L-01064.WXS.T C3L-01064 UCEC WXS tumor CPT0113430010 CPT0113430010.WholeExome.RP-1303.bam 27749172225 BAM aligned CPTAC3 4aad2b8e-3460-4380-ba5a-4366fa2702b7 d24469216f94a0c7fafc154a134d3169 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor"} -C3L-01064.WXS.T.hg38 C3L-01064 UCEC WXS tumor CPT0113430010 b8c569be-3c89-4eaa-9ce6-f138f3911575_wxs_gdc_realn.bam 37537407858 BAM harmonized CPTAC3 e910a927-98d9-4cb1-b6cc-f84522711509 91dabb34f35cfb50c82a01b6bcf3d0af {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor"} -C3L-01102.MethArray.Green.A C3L-01102 CCRCC Methylation_Array tissue_normal CPT0124090006 204373100109_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 95aea250-3842-42fd-8bcb-06fc35e6c320 d655748ea48dbb907ad13822c209a888 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.MethArray.Green.T C3L-01102 CCRCC Methylation_Array tumor CPT0124070007 203219760074_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 5d2d4660-6cd2-4cfd-9be8-2b1de73e6209 2ee9196fa0227c164b55df8d4d96a0a4 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor"} -C3L-01102.MethArray.Red.A C3L-01102 CCRCC Methylation_Array tissue_normal CPT0124090006 204373100109_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 bc955f13-d2ed-4aeb-a6c6-864f5a8f4974 50a948de4c511275e7fb1dc95abeed1f {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.MethArray.Red.T C3L-01102 CCRCC Methylation_Array tumor CPT0124070007 203219760074_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 38e83df9-e283-4f61-a580-f3f6eb493196 f214f2119dbbe417d1fcdcd965f94916 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor"} -C3L-01102.miRNA-Seq.A.hg38 C3L-01102 CCRCC miRNA-Seq tissue_normal CPT0124090012 bb0d457c-1c6d-41be-a228-deddeef11a82_mirnaseq_gdc_realn.bam 290050846 BAM harmonized CPTAC3 eea389f1-bfa5-4243-9a56-2a2982e19fec ca803c116c9f0b446f85c343fd0ceac6 {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.miRNA-Seq.S11_L004_R1.A C3L-01102 CCRCC miRNA-Seq tissue_normal CPT0124090012 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L004_R1_001.unaln.bam 266871954 BAM S11_L004_R1 unaligned CPTAC3 c92e92ee-605b-46d2-b7f0-20f569171bcd 5c2a39f3a9de86574416ad46f24b6a2f {"aliquot_tag": "ALQ_43d35afc", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.miRNA-Seq.S37_L003_R1.T C3L-01102 CCRCC miRNA-Seq tumor CPT0124070010 190108_UNC31-K00269_0176_AHYGLVBBXX_CGGAAT_S37_L003_R1_001.unaln.bam 313437565 BAM S37_L003_R1 unaligned CPTAC3 8dae7e2f-446b-4da1-b004-1af5f887e64e cf8a35db06f8746f7608e24ec6511b3d {"aliquot_tag": "ALQ_12ed85b1", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01102.miRNA-Seq.T.hg38 C3L-01102 CCRCC miRNA-Seq tumor CPT0124070010 d2027cde-2dcb-4c5b-9614-35edbd6dc5e1_mirnaseq_gdc_realn.bam 346493685 BAM harmonized CPTAC3 5f06abfc-6744-4614-bea9-53d035e8c8be 007bf775ef9b35ff83db00fd7c7b6df0 {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor"} -C3L-01102.RNA-Seq.chimeric.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.chimeric.gdc_realn.bam 36986673 BAM chimeric harmonized CPTAC3 8a17c6b8-540a-40ac-b7c6-51a8a51cfcfb e67cb50fd3152599200447bb85f8a5df {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.RNA-Seq.chimeric.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.chimeric.gdc_realn.bam 31998066 BAM chimeric harmonized CPTAC3 f4578bdc-7e5c-4a33-9b8a-47a4fd8f2144 0a20d570593a773b557fa871294fee98 {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor"} -C3L-01102.RNA-Seq.genomic.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.genomic.gdc_realn.bam 8715175503 BAM genomic harmonized CPTAC3 8b6e137b-d0ff-4fd3-87c5-f903c58135ea 5eb15b5be9c90fd930b0698811948583 {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.RNA-Seq.genomic.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.genomic.gdc_realn.bam 9563355114 BAM genomic harmonized CPTAC3 7f954625-cdac-402e-a356-a59b43fffc49 112ad668a756857e0464568f768e5a9f {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor"} -C3L-01102.RNA-Seq.S2_L001_R1.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3977448493 FASTQ S2_L001_R1 unaligned CPTAC3 15c6d436-2531-4144-ad44-2d9cea6f4cfb ec4a053e2f5fea2fe0fb4cb63a4f0be1 {"aliquot_tag": "ALQ_43d35afc", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.RNA-Seq.S2_L001_R2.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4267594053 FASTQ S2_L001_R2 unaligned CPTAC3 3928a34d-4197-4ab2-8070-59aa0efaa5c6 711f734e2aac3a968933a0af700ce73f {"aliquot_tag": "ALQ_43d35afc", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.RNA-Seq.S3_L001_R1.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R1_001.fastq.gz 4114621517 FASTQ S3_L001_R1 unaligned CPTAC3 5bab197d-6934-4b22-9e53-ccb4a5ac7f9c c60dda1109d94d38c77aec101af37109 {"aliquot_tag": "ALQ_12ed85b1", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01102.RNA-Seq.S3_L001_R2.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R2_001.fastq.gz 4436265795 FASTQ S3_L001_R2 unaligned CPTAC3 ce713796-8952-4fb0-a57b-fb24597957d8 9ac83ee47093fd3103191f552a62a21d {"aliquot_tag": "ALQ_12ed85b1", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01102.RNA-Seq.transcriptome.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.transcriptome.gdc_realn.bam 10909384897 BAM transcriptome harmonized CPTAC3 2378848c-e766-4c48-baab-e85a8a27f112 0c5631a283ded16e2c74a4b0533bd557 {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.RNA-Seq.transcriptome.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.transcriptome.gdc_realn.bam 10697134943 BAM transcriptome harmonized CPTAC3 01223823-0396-4a60-86ef-18a18ba24473 95b1201c1fa970c54d99878f0335954a {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor"} -C3L-01102.WGS.A C3L-01102 CCRCC WGS tissue_normal CPT0124090006 CPT0124090006.WholeGenome.RP-1303.bam 64575505733 BAM aligned CPTAC3 647894e1-c594-478b-8e26-9b7cafa182a4 cce30a87dd9d543630c1a7b7f9b84009 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.WGS.A.hg38 C3L-01102 CCRCC WGS tissue_normal CPT0124090006 924bf40d-ea3b-4aa8-8197-a3a373492211_wgs_gdc_realn.bam 94064630023 BAM harmonized CPTAC3 0b5bdcfa-a0dc-4027-9e8a-245800a46269 485f8507fc4874f2ee0601c27237d9d5 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.WGS.N C3L-01102 CCRCC WGS blood_normal CPT0124930002 CPT0124930002.WholeGenome.RP-1303.bam 52285725912 BAM aligned CPTAC3 7d6e38d1-493f-4391-a730-2a86d99d958d 14a5b852036e418d8d603499da714672 {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01102.WGS.N.hg38 C3L-01102 CCRCC WGS blood_normal CPT0124930002 035720c2-a7a8-4fec-a799-784a70e924ae_wgs_gdc_realn.bam 76438304870 BAM harmonized CPTAC3 09fb2c63-e242-4811-8647-7f4f62bef48b 57acb12b6c1906e066256c2eb114565f {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01102.WGS.T C3L-01102 CCRCC WGS tumor CPT0124070007 CPT0124070007.WholeGenome.RP-1303.bam 57779417416 BAM aligned CPTAC3 8b3dbf08-4ff0-4a57-8077-5c6357cbf99a f03d07e86cc319eeb06c2b6d4743582b {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor"} -C3L-01102.WGS.T.hg38 C3L-01102 CCRCC WGS tumor CPT0124070007 ea5ca229-570f-447b-8d68-2ae9e3de0d06_wgs_gdc_realn.bam 84021409865 BAM harmonized CPTAC3 3ce412b1-8223-4389-8041-06f1f9d90ab2 7bab6b3bcc85e9ed80312d98d587a4a8 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor"} -C3L-01102.WXS.A C3L-01102 CCRCC WXS tissue_normal CPT0124090006 CPT0124090006.WholeExome.RP-1303.bam 24657536376 BAM aligned CPTAC3 139dd574-8c22-4dd7-8ae2-ea1deeb12e70 5c35a5bbbb6c25d085c8013aa3e2d9f2 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.WXS.A.hg38 C3L-01102 CCRCC WXS tissue_normal CPT0124090006 924bf40d-ea3b-4aa8-8197-a3a373492211_wxs_gdc_realn.bam 33226501637 BAM harmonized CPTAC3 eea1cebe-edfd-4804-8fc3-997fe5566719 ca455b086e71f793303d4de9a67af073 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01102.WXS.N C3L-01102 CCRCC WXS blood_normal CPT0124930002 CPT0124930002.WholeExome.RP-1303.bam 23869199451 BAM aligned CPTAC3 f9a04005-faa6-4222-93b2-6ed47e35bc1a e5166e0aec51e1b3ce2d5046dea25e2e {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01102.WXS.N.hg38 C3L-01102 CCRCC WXS blood_normal CPT0124930002 035720c2-a7a8-4fec-a799-784a70e924ae_wxs_gdc_realn.bam 33860362410 BAM harmonized CPTAC3 03ee1d44-01b4-4905-83bc-0f086c838bd0 9c801e277a58577350aad228ab8aa117 {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01102.WXS.T C3L-01102 CCRCC WXS tumor CPT0124070007 CPT0124070007.WholeExome.RP-1303.bam 31181342398 BAM aligned CPTAC3 0a24710e-8204-4fb9-aba9-3084a1381490 41aabb5cd81ff2c3d83cc0dbac297d39 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor"} -C3L-01102.WXS.T.hg38 C3L-01102 CCRCC WXS tumor CPT0124070007 ea5ca229-570f-447b-8d68-2ae9e3de0d06_wxs_gdc_realn.bam 43159555100 BAM harmonized CPTAC3 515c81d5-b85d-4666-b713-f247d2e22182 f2cd4c11a8bdd82489f7b9c78919df86 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor"} -C3L-01106.MethArray.Green.A C3L-01106 CCRCC Methylation_Array tissue_normal CPT0127560006 204930640023_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a0a60f23-0f34-4c62-b040-09bf39dd0993 4f38b419ccf531b21079f7613284431c {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.MethArray.Green.T C3L-01106 CCRCC Methylation_Array tumor CPT0127540007 203219670106_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 4bee1a1b-36fb-4b3e-84a5-f04867f38240 26109848902818842b084fdc853d0fa0 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor"} -C3L-01106.MethArray.Red.A C3L-01106 CCRCC Methylation_Array tissue_normal CPT0127560006 204930640023_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 3f8142ba-623d-4a6c-acc3-6943f8de56ae e90b9f00439bc19ad4566e420a6813f9 {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.MethArray.Red.T C3L-01106 CCRCC Methylation_Array tumor CPT0127540007 203219670106_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 be063999-36ee-4ef2-9948-2d791528039c 740fc898db02bd22b4075e360b8468da {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor"} -C3L-01106.miRNA-Seq.A.hg38 C3L-01106 CCRCC miRNA-Seq tissue_normal CPT0127560009 e6f73fe8-adf7-4ea1-a3c5-1e3cee8758f9_mirnaseq_gdc_realn.bam 309292566 BAM harmonized CPTAC3 81732bf0-44c2-4be3-ae2f-53d254c0c3ea a3d764bbd90c3d46d259f1d4310a321f {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.miRNA-Seq.S18_L004_R1.T C3L-01106 CCRCC miRNA-Seq tumor CPT0127540010 190108_UNC31-K00269_0176_AHYGLVBBXX_GTCCGC_S18_L004_R1_001.unaln.bam 211791575 BAM S18_L004_R1 unaligned CPTAC3 100cdc4f-4148-4f16-bcc1-d18b1c256fa1 3555e524b5ca404327bf96c3d16007e9 {"aliquot_tag": "ALQ_3468744f", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01106.miRNA-Seq.S8_L002_R1.A C3L-01106 CCRCC miRNA-Seq tissue_normal CPT0127560009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L002_R1_001.unaln.bam 284398114 BAM S8_L002_R1 unaligned CPTAC3 789ea562-16cc-4b7e-97bd-8a6b851146fb e07a8de36c86dc74c75ed389a9bf9b6c {"aliquot_tag": "ALQ_2e6faeca", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.miRNA-Seq.T.hg38 C3L-01106 CCRCC miRNA-Seq tumor CPT0127540010 9ae51e96-97ba-4091-a19a-1f4b6a409753_mirnaseq_gdc_realn.bam 229601716 BAM harmonized CPTAC3 c0d79f69-a4c3-4548-9271-23f49a89dbeb 56ad7f5ea224f8c858b7889f2ed10378 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor"} -C3L-01106.RNA-Seq.chimeric.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.chimeric.gdc_realn.bam 242326235 BAM chimeric harmonized CPTAC3 e259ae29-f95f-4154-8824-05ccdf8ead9e 4f623bc38f41d6bbb93caa88c7361560 {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.RNA-Seq.chimeric.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.chimeric.gdc_realn.bam 149274133 BAM chimeric harmonized CPTAC3 5bbe0022-c4b4-4b34-968c-b28051503c7f 901b38d24bc5b421c076ab655ff177c3 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor"} -C3L-01106.RNA-Seq.genomic.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.genomic.gdc_realn.bam 8753843433 BAM genomic harmonized CPTAC3 d4a845d5-cd90-4bdf-80c0-6b6c9cdc20dc efc246265482f0d6e07c0657d96757f2 {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.RNA-Seq.genomic.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.genomic.gdc_realn.bam 8970359014 BAM genomic harmonized CPTAC3 257fe451-6068-4690-a269-877ddc9fa67c fb8f4b4e6576b1de4f1dfe7264dc4002 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor"} -C3L-01106.RNA-Seq.S14_L005_R1.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R1_001.fastq.gz 3719343077 FASTQ S14_L005_R1 unaligned CPTAC3 87d37919-909f-4599-8b5a-fa783c56971e c39a6288b1128abfd597319e8ba21e9a {"aliquot_tag": "ALQ_3468744f", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01106.RNA-Seq.S14_L005_R2.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R2_001.fastq.gz 3839056192 FASTQ S14_L005_R2 unaligned CPTAC3 466ffb31-b95e-47d9-b0b8-a4dfbfe0ed51 77142614cb9c7bba97b233ac937cac16 {"aliquot_tag": "ALQ_3468744f", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01106.RNA-Seq.S8_L004_R1.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R1_001.fastq.gz 3645256312 FASTQ S8_L004_R1 unaligned CPTAC3 1f45622f-4621-4a65-a293-39d333d45578 114e174595490dac74ffd12cc27b8a62 {"aliquot_tag": "ALQ_2e6faeca", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.RNA-Seq.S8_L004_R2.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R2_001.fastq.gz 4142286117 FASTQ S8_L004_R2 unaligned CPTAC3 6142a971-a49e-4090-a077-a8e5d34727a6 443332cfdaf02b01b9f6e266b55171e9 {"aliquot_tag": "ALQ_2e6faeca", "sample": "S8", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.RNA-Seq.transcriptome.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.transcriptome.gdc_realn.bam 9510027754 BAM transcriptome harmonized CPTAC3 5663bb71-a5a7-45af-bf65-b15fce4b9e78 08d449ca473d807d706cfb87bcc6088a {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.RNA-Seq.transcriptome.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.transcriptome.gdc_realn.bam 10102732524 BAM transcriptome harmonized CPTAC3 5f741bab-2c68-47c0-a871-ba5e4e50046a f6c7b3a2c1673b4b2f25c82d9aba9528 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor"} -C3L-01106.WGS.A C3L-01106 CCRCC WGS tissue_normal CPT0127560006 CPT0127560006.WholeGenome.RP-1303.bam 63750521126 BAM aligned CPTAC3 0629d538-5b82-4639-9b77-e6e581fea8a9 cd0d9187de5f645a00120b3183967629 {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.WGS.A.hg38 C3L-01106 CCRCC WGS tissue_normal CPT0127560006 86515b8e-a388-4458-9ffd-0029a990e22c_wgs_gdc_realn.bam 92913603357 BAM harmonized CPTAC3 a53a8442-903b-4713-895f-9063244469ad 5779d8ea7ea55bcb2546e09f502999ae {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.WGS.N C3L-01106 CCRCC WGS blood_normal CPT0128590002 CPT0128590002.WholeGenome.RP-1303.bam 100045212935 BAM aligned CPTAC3 c6d37ac1-316c-45db-aad5-c344e23aa741 d53c93eec2b85ce852ed95b12b13281b {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01106.WGS.N.hg38 C3L-01106 CCRCC WGS blood_normal CPT0128590002 e4a3dd00-3c13-495b-9e94-6557df14332b_wgs_gdc_realn.bam 146274454410 BAM harmonized CPTAC3 9b40e1fc-b8be-4345-a743-91a94b641537 b1853043d6f15945a377e2ec4a7af4ec {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01106.WGS.T C3L-01106 CCRCC WGS tumor CPT0127540007 CPT0127540007.WholeGenome.RP-1303.bam 55709090478 BAM aligned CPTAC3 e576cdf8-06bb-434a-834a-ddaf068d56d3 add9a9c6055ec182c0ce7ea196c96b36 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor"} -C3L-01106.WGS.T.hg38 C3L-01106 CCRCC WGS tumor CPT0127540007 35453c5b-636f-40d1-841d-8dcc50a0e539_wgs_gdc_realn.bam 82044190208 BAM harmonized CPTAC3 82e51d4e-22ce-4f4d-95cb-56ef38885ad2 575852f67676a475b9d750572054f019 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor"} -C3L-01106.WXS.A C3L-01106 CCRCC WXS tissue_normal CPT0127560006 CPT0127560006.WholeExome.RP-1303.bam 19706807132 BAM aligned CPTAC3 40f3cabd-eaba-45d8-b83d-e8ae5775afe4 e98cd70aaac965daf4efeab1bc6069dc {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.WXS.A.hg38 C3L-01106 CCRCC WXS tissue_normal CPT0127560006 86515b8e-a388-4458-9ffd-0029a990e22c_wxs_gdc_realn.bam 27896632428 BAM harmonized CPTAC3 37e6dfc4-351d-4d78-942b-718fc7d6ef9c 5d5a269b79f72ff129aab58505899a6f {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01106.WXS.N C3L-01106 CCRCC WXS blood_normal CPT0128590002 CPT0128590002.WholeExome.RP-1303.bam 23525731420 BAM aligned CPTAC3 32798656-2a8f-447f-956b-2a3a92abe4ba e2aa0476106e7b606952b5422e68eb10 {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01106.WXS.N.hg38 C3L-01106 CCRCC WXS blood_normal CPT0128590002 e4a3dd00-3c13-495b-9e94-6557df14332b_wxs_gdc_realn.bam 32362030026 BAM harmonized CPTAC3 71de9483-4c90-4f22-b6ea-e8b168d60e2a 5cd68d5f8adea43e5e11f4187df185e1 {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01106.WXS.T C3L-01106 CCRCC WXS tumor CPT0127540007 CPT0127540007.WholeExome.RP-1303.bam 24872901312 BAM aligned CPTAC3 c0c30237-d1f7-49aa-af81-a09ccec5c0ba 9926be2b339263433274f3c304c669a5 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor"} -C3L-01106.WXS.T.hg38 C3L-01106 CCRCC WXS tumor CPT0127540007 35453c5b-636f-40d1-841d-8dcc50a0e539_wxs_gdc_realn.bam 34710626657 BAM harmonized CPTAC3 1e8e590d-84be-4297-adfc-ef68aefbc6b6 57e130912b431ddcfdac46b49d855020 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor"} -C3L-01107.MethArray.Green.A C3L-01107 CCRCC Methylation_Array tissue_normal CPT0128220006 204930640061_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 aa7f9e40-2be2-448d-bc21-039b0e159f38 5a64e1f9deb62b96090be3f170428dc8 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.MethArray.Green.T C3L-01107 CCRCC Methylation_Array tumor CPT0128200006 203219720176_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1007ea1e-7bff-4029-9e33-1d5b1c6718e4 a8fd322ea68e152eadd78f68505eede2 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor"} -C3L-01107.MethArray.Red.A C3L-01107 CCRCC Methylation_Array tissue_normal CPT0128220006 204930640061_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 93d604ca-cc24-4e5d-8cbd-451c06a27968 d6386253cd34fc3102d9e8c21b2d9134 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.MethArray.Red.T C3L-01107 CCRCC Methylation_Array tumor CPT0128200006 203219720176_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 04203123-b27f-4c7f-ab1d-08fc1c829c3b 76d1f45b3b051de73bc5040e4d5c70d2 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor"} -C3L-01107.miRNA-Seq.A.hg38 C3L-01107 CCRCC miRNA-Seq tissue_normal CPT0128220009 b7e341b4-3318-4ebd-a8c6-689d7bef03c4_mirnaseq_gdc_realn.bam 224872362 BAM harmonized CPTAC3 d79a6ea7-8091-4dac-976d-a379f6838984 353e6f3319b1632a79c314a5efbd08e2 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.miRNA-Seq.S19_L004_R1.T C3L-01107 CCRCC miRNA-Seq tumor CPT0128200009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGAAA_S19_L004_R1_001.unaln.bam 299467308 BAM S19_L004_R1 unaligned CPTAC3 edd94b7d-368c-4ff5-9dc8-28fd14b2e2f6 8d59ef71f5efdd4038dfaac4933ba4bb {"aliquot_tag": "ALQ_4a621b3b", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01107.miRNA-Seq.S9_L002_R1.A C3L-01107 CCRCC miRNA-Seq tissue_normal CPT0128220009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L002_R1_001.unaln.bam 201318306 BAM S9_L002_R1 unaligned CPTAC3 651c73fc-a310-4b62-98d6-7391da4a44aa 3ef43052b2ede85cc3e2e6d705841fa1 {"aliquot_tag": "ALQ_30a2485b", "sample": "S9", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.miRNA-Seq.T.hg38 C3L-01107 CCRCC miRNA-Seq tumor CPT0128200009 bf6f1cc2-d9d6-4476-8e44-57bc52f22fb6_mirnaseq_gdc_realn.bam 327583224 BAM harmonized CPTAC3 d610852e-9f88-4501-9c93-b907d829b59d 488aeddbcbe6666ff37635264e0d4cf5 {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor"} -C3L-01107.RNA-Seq.chimeric.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.chimeric.gdc_realn.bam 178455688 BAM chimeric harmonized CPTAC3 0660560e-60e4-4a2e-8da8-9ea4adabde17 91bff53ab8bfa3914efcda89b7b1bfd3 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.RNA-Seq.chimeric.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.chimeric.gdc_realn.bam 299457948 BAM chimeric harmonized CPTAC3 a85f52c8-d02d-4f3e-9b86-1bb6a693722f 3a7af14b56ee5b803decc574dae4abca {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor"} -C3L-01107.RNA-Seq.genomic.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.genomic.gdc_realn.bam 9556818666 BAM genomic harmonized CPTAC3 31880cb7-f309-4803-8bfd-70e46e9a64f9 21c08546c54f3ce908203692c604a1b2 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.RNA-Seq.genomic.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.genomic.gdc_realn.bam 9795322559 BAM genomic harmonized CPTAC3 1e24632e-0a4e-48a8-8e1b-713a0f10f022 8a63fecdf3bb409f7045a4d513e08166 {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor"} -C3L-01107.RNA-Seq.S16_L005_R1.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R1_001.fastq.gz 4285834213 FASTQ S16_L005_R1 unaligned CPTAC3 32bb4c82-91e8-486a-aef8-abc7dba1ead8 166a102e34b7b04ff78666b1cb7d9418 {"aliquot_tag": "ALQ_4a621b3b", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01107.RNA-Seq.S16_L005_R2.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R2_001.fastq.gz 4794507671 FASTQ S16_L005_R2 unaligned CPTAC3 fe116b10-f7df-46ac-8bc5-6d74f714a258 e3703894aa8f09856ca27fbd654b1b91 {"aliquot_tag": "ALQ_4a621b3b", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01107.RNA-Seq.S7_L004_R1.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R1_001.fastq.gz 4056775217 FASTQ S7_L004_R1 unaligned CPTAC3 f3dc1ccc-d860-4956-9913-ffe18bb92a04 1fbb996178e9a011d2a82c5dd1c3476f {"aliquot_tag": "ALQ_30a2485b", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.RNA-Seq.S7_L004_R2.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R2_001.fastq.gz 4406269700 FASTQ S7_L004_R2 unaligned CPTAC3 20f6261f-79e8-44ad-8b11-38fafb6099c0 5894100c33d5006a4abd7e52b9c26a1a {"aliquot_tag": "ALQ_30a2485b", "sample": "S7", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.RNA-Seq.transcriptome.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.transcriptome.gdc_realn.bam 9714805768 BAM transcriptome harmonized CPTAC3 d933f4a8-fea7-48bc-88c4-624200cf703d d3558c5449502eeb46ea760007e139d5 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.RNA-Seq.transcriptome.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.transcriptome.gdc_realn.bam 9653012184 BAM transcriptome harmonized CPTAC3 f877c0d2-8cee-4c9f-b55d-a43c5c194f18 8369ce524113993d56ad01d579a2a41d {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor"} -C3L-01107.WGS.A C3L-01107 CCRCC WGS tissue_normal CPT0128220006 CPT0128220006.WholeGenome.RP-1303.bam 57950576185 BAM aligned CPTAC3 0ac806f4-7541-4a2e-a997-0a8c013c956e c09605546f14800b17c09c3ae450a33a {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.WGS.A.hg38 C3L-01107 CCRCC WGS tissue_normal CPT0128220006 9484c82f-51d6-4a28-91ed-c2cddd51d56f_wgs_gdc_realn.bam 83482721157 BAM harmonized CPTAC3 bea0d5f9-81dc-4ceb-a1ba-de66a4592802 4d5d07f61f80716a2a87160e5b8cf1ed {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.WGS.N C3L-01107 CCRCC WGS blood_normal CPT0128600002 CPT0128600002.WholeGenome.RP-1303.bam 59861252316 BAM aligned CPTAC3 e7c83446-9419-4ab6-a3ad-a90d0f66dab8 6ce8062d5d7bd46ca0cbe28d42b34bf0 {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01107.WGS.N.hg38 C3L-01107 CCRCC WGS blood_normal CPT0128600002 870dca40-6bd2-474b-95d6-4a101ccb79b5_wgs_gdc_realn.bam 84860624551 BAM harmonized CPTAC3 13b2f0f1-40e8-4315-b453-8a092d20a850 47af80ce5740d40f826cab2c5e875db0 {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01107.WGS.T C3L-01107 CCRCC WGS tumor CPT0128200006 CPT0128200006.WholeGenome.RP-1303.bam 92836706292 BAM aligned CPTAC3 ced7609a-58b8-4939-91b2-1ebe91ba340d 94b1175837f22ab50d5bdd30c0b50561 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor"} -C3L-01107.WGS.T.hg38 C3L-01107 CCRCC WGS tumor CPT0128200006 8567dad7-eaef-4b7b-b098-5997eb5939df_wgs_gdc_realn.bam 134622575575 BAM harmonized CPTAC3 7263cc94-ae08-470b-88c5-f0714352622a 1649da5c397533eb4335322711b81cf5 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor"} -C3L-01107.WXS.A C3L-01107 CCRCC WXS tissue_normal CPT0128220006 CPT0128220006.WholeExome.RP-1303.bam 15904175109 BAM aligned CPTAC3 24648a4c-36b7-45f8-a97f-583a4e0717cb f21b1d8ded2ead4f121aff1254a7d4d6 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.WXS.A.hg38 C3L-01107 CCRCC WXS tissue_normal CPT0128220006 9484c82f-51d6-4a28-91ed-c2cddd51d56f_wxs_gdc_realn.bam 22269794026 BAM harmonized CPTAC3 d04959f7-9e82-468f-b283-1e3b8d296be6 9a0d2f14d37c9fbdc6c61b12f50affe5 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01107.WXS.N C3L-01107 CCRCC WXS blood_normal CPT0128600002 CPT0128600002.WholeExome.RP-1303.bam 28276859478 BAM aligned CPTAC3 cec90ac5-7aa4-40b6-a882-764469f62abe 5c891948ecfcc1d2f82514263ca6ec1d {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01107.WXS.N.hg38 C3L-01107 CCRCC WXS blood_normal CPT0128600002 870dca40-6bd2-474b-95d6-4a101ccb79b5_wxs_gdc_realn.bam 38398606235 BAM harmonized CPTAC3 d17ede88-086b-4361-a8d6-ac04a0bda13b 5bd6e0a41b8fce172907460ab9b648a7 {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01107.WXS.T C3L-01107 CCRCC WXS tumor CPT0128200006 CPT0128200006.WholeExome.RP-1303.bam 21901878891 BAM aligned CPTAC3 dff09d53-27f1-414d-ab91-a1c7c08a6cca f339ac718700dc8a1dbbf52919dfc9b0 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor"} -C3L-01107.WXS.T.hg38 C3L-01107 CCRCC WXS tumor CPT0128200006 8567dad7-eaef-4b7b-b098-5997eb5939df_wxs_gdc_realn.bam 30218005264 BAM harmonized CPTAC3 32740adf-4629-4837-a6e7-4fa3e1280546 7193c00a9363f057cbcd07e7daa3d9a2 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor"} -C3L-01124.MethArray.Green.A C3L-01124 PDA Methylation_Array tissue_normal CPT0218220007 203561450054_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7c7487e7-afb2-4569-ae21-62fafe23e69b 67ab7102764898f4cb491e69fdf862e6 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01124.MethArray.Red.A C3L-01124 PDA Methylation_Array tissue_normal CPT0218220007 203561450054_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 76f868e2-7e25-43da-9780-966481f95482 65f50c02c7f84bcca22f03e128f15f09 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01124.miRNA-Seq.S11_L004_R1.T C3L-01124 PDA miRNA-Seq tumor CPT0218200010 190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L004_R1_001.unaln.bam 237728064 BAM S11_L004_R1 unaligned CPTAC3 083f9e15-2e46-464c-a823-e0ee4801319b 9c922e952b0b7a19ca6252a12eb1f127 {"aliquot_tag": "ALQ_9da7a9f8", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01124.miRNA-Seq.T.hg38 C3L-01124 PDA miRNA-Seq tumor CPT0218200010 9e9a91c6-6afb-41e2-856a-b8da7f41b36d_mirnaseq_gdc_realn.bam 268526312 BAM harmonized CPTAC3 6dec9110-8399-4520-b914-92abe16c6c99 9a60e1e985a376777b0c9bc80d198e8b {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor"} -C3L-01124.RNA-Seq.chimeric.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.chimeric.gdc_realn.bam 30521533 BAM chimeric harmonized CPTAC3 f898eec7-152d-4fcf-8a0c-88ae631ce6ea bccb472ba13bda56a5c24eb77a647ee9 {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor"} -C3L-01124.RNA-Seq.genomic.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.genomic.gdc_realn.bam 7761088890 BAM genomic harmonized CPTAC3 4703d5af-4821-4cf4-a0a1-e475d1075f84 e98efd43d1ad8972257d6e08d8fedc72 {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor"} -C3L-01124.RNA-Seq.S4_L001_R1.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3634837869 FASTQ S4_L001_R1 unaligned CPTAC3 34e81818-13cd-4293-8928-7b2ccf25029e f30cd0593ca08a1bb79312a919c99385 {"aliquot_tag": "ALQ_9da7a9f8", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01124.RNA-Seq.S4_L001_R2.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 3980733627 FASTQ S4_L001_R2 unaligned CPTAC3 96f94f29-ca45-4603-98e8-22d9374e57c7 b40d8e58dadd51b51df3d67c5d4b1e70 {"aliquot_tag": "ALQ_9da7a9f8", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01124.RNA-Seq.transcriptome.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.transcriptome.gdc_realn.bam 9465846694 BAM transcriptome harmonized CPTAC3 81f74fa9-b630-4803-a0fa-1b7645958820 d1c1aa84083583abf425806af5dbe2a6 {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor"} -C3L-01124.WGS.N C3L-01124 PDA WGS blood_normal CPT0220240002 CPT0220240002.WholeGenome.RP-1303.bam 66538715820 BAM aligned CPTAC3 b81ac938-96bc-4ef4-b90c-c79c20ab61dc d541cd218b80e5cd840b0c78dda5f4b5 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01124.WGS.N.hg38 C3L-01124 PDA WGS blood_normal CPT0220240002 8b168954-0caa-4c8b-8c1f-0521f4da89ec_wgs_gdc_realn.bam 95701406517 BAM harmonized CPTAC3 1fbe8af1-8b73-4ad2-99eb-43fb406d4331 1413e11fcb3546698ec8fda545457868 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01124.WGS.T C3L-01124 PDA WGS tumor CPT0218200007 CPT0218200007.WholeGenome.RP-1303.bam 59452997748 BAM aligned CPTAC3 e82ed373-4668-400c-ab79-3dbfa4d5c48e 3d1b6162f7aabedd70bc3181ecd11d6f {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor"} -C3L-01124.WGS.T.hg38 C3L-01124 PDA WGS tumor CPT0218200007 41359c2a-31d1-41b7-8c7e-226fdd046c56_wgs_gdc_realn.bam 88498045827 BAM harmonized CPTAC3 256a810d-17cb-428d-b864-94539732f0ef 91d4eaed0a40fd1d17e5e5710d8f9f33 {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor"} -C3L-01124.WXS.A C3L-01124 PDA WXS tissue_normal CPT0218220007 CPT0218220007.WholeExome.RP-1303.bam 16673780926 BAM aligned CPTAC3 618b173a-2d88-435d-b334-96df1c547da5 d88aafc611fa8bf39db98c11adac8a49 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01124.WXS.A.hg38 C3L-01124 PDA WXS tissue_normal CPT0218220007 1560960d-b1c2-4d40-8c2f-1158d80cb958_wxs_gdc_realn.bam 22666139296 BAM harmonized CPTAC3 96f75467-42da-4f1a-97ea-e91be4c2a5df 167aa98da762b9bcbf12fbb55fcc0689 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01124.WXS.N C3L-01124 PDA WXS blood_normal CPT0220240002 CPT0220240002.WholeExome.RP-1303.bam 29856336671 BAM aligned CPTAC3 155c6a65-d2f7-44c2-9f3d-e0e58692c80b ac8c15bb4218de513355b5aabc1ea7a7 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01124.WXS.N.hg38 C3L-01124 PDA WXS blood_normal CPT0220240002 8b168954-0caa-4c8b-8c1f-0521f4da89ec_wxs_gdc_realn.bam 41450362710 BAM harmonized CPTAC3 9b7144fa-d001-41bd-a5b1-c5e70f281cdf e308719c7e7602e0bdf0d2a7f6469895 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01124.WXS.T C3L-01124 PDA WXS tumor CPT0218200007 CPT0218200007.WholeExome.RP-1303.bam 24367837733 BAM aligned CPTAC3 ad86dbd0-abbe-47df-adce-a3a1a00f6437 8c6dbf8a84f2feeef9c28e1ecff3c2ef {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor"} -C3L-01124.WXS.T.hg38 C3L-01124 PDA WXS tumor CPT0218200007 41359c2a-31d1-41b7-8c7e-226fdd046c56_wxs_gdc_realn.bam 33847621746 BAM harmonized CPTAC3 56c79b6e-5551-49c8-b767-04dd7a30d08a f1a903fa82fc74bac5a7afca4a686ffd {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor"} -C3L-01138.MethArray.Green.A C3L-01138 HNSCC Methylation_Array tissue_normal CPT0199710006 203273200080_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 29fd5fa6-e314-4ba7-9b96-5cb5a014b13a 5955bee82bd786d84c849677f848362e {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.MethArray.Green.T C3L-01138 HNSCC Methylation_Array tumor CPT0199700006 203271750047_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 49e300f2-6285-49fe-847f-cabc805965e4 52a830aa8c75b76559d99da0dcf4aee1 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor"} -C3L-01138.MethArray.Red.A C3L-01138 HNSCC Methylation_Array tissue_normal CPT0199710006 203273200080_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 1ff5feaf-8ee4-4dbf-b454-f4c0b5a48eac c5ae4d1097e613f2a039c24d392d5455 {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.MethArray.Red.T C3L-01138 HNSCC Methylation_Array tumor CPT0199700006 203271750047_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 90d3af24-57a8-4034-9b82-fdfceddfb93f 28a0900b8280ffd80c1c68f5079e7568 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor"} -C3L-01138.miRNA-Seq.A.hg38 C3L-01138 HNSCC miRNA-Seq tissue_normal CPT0199710009 5f03f58e-b9dd-4896-aa98-d2302331711c_mirnaseq_gdc_realn.bam 200017582 BAM harmonized CPTAC3 9928cac7-ad76-4906-94f4-a960a459bdc8 59a574f4fad7d2d505f024dacf8d65fa {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.miRNA-Seq.S13_L003_R1.A C3L-01138 HNSCC miRNA-Seq tissue_normal CPT0199710009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L003_R1_001.unaln.bam 180600074 BAM S13_L003_R1 unaligned CPTAC3 0c8b12a6-2386-47c5-9712-dfed3a6b04b1 7d7bb37122a2a75b86a40924eddf0080 {"aliquot_tag": "ALQ_dcd2b4da", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.miRNA-Seq.S4_L003_R1.T C3L-01138 HNSCC miRNA-Seq tumor CPT0199700009 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L003_R1_001.unaln.bam 273191804 BAM S4_L003_R1 unaligned CPTAC3 34933fdd-e314-4e9b-98a4-84917ac5f252 eb46998fbb5c8b85d3b5c16694a53c77 {"aliquot_tag": "ALQ_e1b29d6a", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01138.miRNA-Seq.T.hg38 C3L-01138 HNSCC miRNA-Seq tumor CPT0199700009 c5e57c44-c650-466a-a82f-e42445cfd4c0_mirnaseq_gdc_realn.bam 319207444 BAM harmonized CPTAC3 d41b9b5f-973f-4a69-abff-147e4c719703 4cee68c414676cc995faf8795a9fab01 {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.chimeric.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.chimeric.gdc_realn.bam 175019185 BAM chimeric harmonized CPTAC3 50e3f844-0234-4b28-b16b-13178fd6336f a538d8d08a410f5c2af439029ad447c0 {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.RNA-Seq.chimeric.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.chimeric.gdc_realn.bam 364114353 BAM chimeric harmonized CPTAC3 e7f4aaa7-e8b2-49ab-943f-64566063607a 2e2881fb7a4d3f7a8440ad1fb2735e82 {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.chimeric.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.chimeric.gdc_realn.bam 54851581 BAM chimeric harmonized CPTAC3 09743d32-814c-4199-a7ef-c9377929d734 e0e1cbd42b38fffe9ce7b5471827c7c0 {"aliquot_tag": "ALQ_8cb27779", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.genomic.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.genomic.gdc_realn.bam 8212393467 BAM genomic harmonized CPTAC3 7e69c9b6-049c-4d7a-8484-ed180d891b1e 33584fb87768ac36f54688a676c38709 {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.RNA-Seq.genomic.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.genomic.gdc_realn.bam 9048925675 BAM genomic harmonized CPTAC3 80a66e75-5568-40d0-a2e1-18af7c74029b 44766b3bc7a377f272e17b0417267d4e {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.genomic.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.genomic.gdc_realn.bam 6264169674 BAM genomic harmonized CPTAC3 96734a75-38a3-4ee8-8c8d-1f76fa126096 f14b112d4d45a1a95eccc59578db1e60 {"aliquot_tag": "ALQ_8cb27779", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.S10_R1.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R1_001.fastq.gz 3262539991 FASTQ S10_R1 unaligned CPTAC3 7ac9df57-5261-4e4d-97d0-f89ebe26e2bc 727dfae420e8bef9a73295f6dbba4740 {"aliquot_tag": "ALQ_8cb27779", "sample": "S10", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.S10_R2.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R2_001.fastq.gz 3525874971 FASTQ S10_R2 unaligned CPTAC3 44574794-ab0a-4ff0-b924-2e211433a67e a704da6730f1d1d68de240a690b92cbb {"aliquot_tag": "ALQ_8cb27779", "sample": "S10", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.S2_L007_R1.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R1_001.fastq.gz 3671894922 FASTQ S2_L007_R1 unaligned CPTAC3 7385e76e-77e3-42c8-bffa-6512ac6f1c7f e2b1df6b8b388012fc49ca7f2972f9c8 {"aliquot_tag": "ALQ_dcd2b4da", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.RNA-Seq.S2_L007_R2.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R2_001.fastq.gz 4034713163 FASTQ S2_L007_R2 unaligned CPTAC3 274a4d30-85cd-45be-a44a-92b9bbad39e4 24ef7e84f816653a899756e2d6cd2149 {"aliquot_tag": "ALQ_dcd2b4da", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.RNA-Seq.S5_L002_R1.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R1_001.fastq.gz 4269875054 FASTQ S5_L002_R1 unaligned CPTAC3 87b6c3bd-006e-4541-8788-e6fe36fb4bc0 9e46cfefd601e26d91016c1d87b8a49d {"aliquot_tag": "ALQ_e1b29d6a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.S5_L002_R2.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R2_001.fastq.gz 4674041813 FASTQ S5_L002_R2 unaligned CPTAC3 f88801c9-0c9b-4504-8766-7fb28da9af70 94e855fce1170ccef102b33f749782c4 {"aliquot_tag": "ALQ_e1b29d6a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.transcriptome.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.transcriptome.gdc_realn.bam 9978171313 BAM transcriptome harmonized CPTAC3 df8bdf5c-4048-4978-9bd0-41b451a3e739 06f39c400304f24ce45594928677c2df {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.RNA-Seq.transcriptome.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.transcriptome.gdc_realn.bam 11425020060 BAM transcriptome harmonized CPTAC3 c2698e12-de0f-426a-9efa-6eee95660f39 2154bfa4f33ad95f0a339ff26dc474f6 {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor"} -C3L-01138.RNA-Seq.transcriptome.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.transcriptome.gdc_realn.bam 3889752068 BAM transcriptome harmonized CPTAC3 b99b7bfe-86bd-470e-bcfd-2768a18fea06 3448565d0c3bc6593834815ab79ed36c {"aliquot_tag": "ALQ_8cb27779", "gdc_sample_type": "Primary Tumor"} -C3L-01138.WGS.N C3L-01138 HNSCC WGS blood_normal CPT0200380002 CPT0200380002.WholeGenome.RP-1303.bam 61869468074 BAM aligned CPTAC3 5b6736d9-5077-4616-99ec-ffbdfa828a1c 3d437144be6df81fdc6bc10bf3483356 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal"} -C3L-01138.WGS.N.hg38 C3L-01138 HNSCC WGS blood_normal CPT0200380002 90e939ef-35e2-4b4c-98a8-0f6e22d7e0dc_wgs_gdc_realn.bam 89572705207 BAM harmonized CPTAC3 56b144c0-61e4-4cf6-bce8-bc633c8a0a3c 6eee5b3720adfbc33728e0a987a81e27 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal"} -C3L-01138.WGS.T C3L-01138 HNSCC WGS tumor CPT0199700006 CPT0199700006.WholeGenome.RP-1303.bam 60823750266 BAM aligned CPTAC3 745955ab-97a7-421f-90a0-d7bd1441be61 e3d35d8f02b9cdc62471f359342f7889 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor"} -C3L-01138.WGS.T.hg38 C3L-01138 HNSCC WGS tumor CPT0199700006 52e9042a-995c-48e4-9642-470e44271aab_wgs_gdc_realn.bam 95079733142 BAM harmonized CPTAC3 701902a5-1c1d-464a-8d1e-ae612216d6a2 255205c6710a044e75d7fe536823dfbc {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor"} -C3L-01138.WXS.A C3L-01138 HNSCC WXS tissue_normal CPT0199710006 CPT0199710006.WholeExome.RP-1303.bam 21097786156 BAM aligned CPTAC3 5c429b30-e109-4574-8861-b499a5df0090 ed7739d0db9190d6ec4501c90ebb5923 {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.WXS.A.hg38 C3L-01138 HNSCC WXS tissue_normal CPT0199710006 345ca072-dab1-4991-9133-4435ef50ed04_wxs_gdc_realn.bam 28706687459 BAM harmonized CPTAC3 a5a2f64b-933b-49b8-92d8-ced442149456 b0107efdd35de6a45ebf4c97f47a3b00 {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01138.WXS.N C3L-01138 HNSCC WXS blood_normal CPT0200380002 CPT0200380002.WholeExome.RP-1303.bam 24342075803 BAM aligned CPTAC3 70f26752-d0e9-404b-8047-f6b6f7b52a83 9134a35b68f4b82bccfa1c0ed4ad4dd1 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal"} -C3L-01138.WXS.N.hg38 C3L-01138 HNSCC WXS blood_normal CPT0200380002 90e939ef-35e2-4b4c-98a8-0f6e22d7e0dc_wxs_gdc_realn.bam 32909913703 BAM harmonized CPTAC3 de0941fa-7202-41bc-a95e-92575c7afd81 a92438e3ceaa82134266c4d512503401 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal"} -C3L-01138.WXS.T C3L-01138 HNSCC WXS tumor CPT0199700006 CPT0199700006.WholeExome.RP-1303.bam 22482975124 BAM aligned CPTAC3 2571bf6e-d1fa-494a-ba84-b2a8fe125027 f662c52d42110997d9f4e1a29c265511 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor"} -C3L-01138.WXS.T.hg38 C3L-01138 HNSCC WXS tumor CPT0199700006 52e9042a-995c-48e4-9642-470e44271aab_wxs_gdc_realn.bam 31133128038 BAM harmonized CPTAC3 6313ed8e-0de5-4670-a5a0-ba169390009b 4c5af86daf081b0ba07af399318d73bd {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor"} -C3L-01142.MethArray.Green.T C3L-01142 GBM Methylation_Array tumor CPT0218330007 203219650065_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 eb552352-37bf-488d-b9b2-a10ed1323b07 31807fecb4a32391ad236a784780aaa3 {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor"} -C3L-01142.MethArray.Red.T C3L-01142 GBM Methylation_Array tumor CPT0218330007 203219650065_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 68873253-43d2-434b-aa2a-7ab2bc165141 d78733ba26c8cc75db3a1be5f01e0398 {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor"} -C3L-01142.miRNA-Seq.S161_L008_R1.T C3L-01142 GBM miRNA-Seq tumor CPT0218330010 190828_UNC32-K00270_0200_BH7GVJBBXY_ACTGAT_S161_L008_R1_001.unaln.bam 349353716 BAM S161_L008_R1 unaligned CPTAC3 a63900ea-f195-4548-97f1-850b5d92ce5a 37cb68a049b8abce9b98ff2a3a13a9ac {"aliquot_tag": "ALQ_115b008d", "sample": "S161", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01142.miRNA-Seq.T.hg38 C3L-01142 GBM miRNA-Seq tumor CPT0218330010 9adba7d6-14f0-462c-a00c-7e7b5b1dbb95_mirnaseq_gdc_realn.bam 382838184 BAM harmonized CPTAC3 a0c7caa5-f562-42ad-aa27-a6f91756f27c 755bbe959ff2ec2392ba0a20068da487 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor"} -C3L-01142.RNA-Seq.chimeric.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.chimeric.gdc_realn.bam 41795427 BAM chimeric harmonized CPTAC3 50a2f654-a2fd-4e92-820e-66f41a7ff96b 6c8c9e2a8493bf645ca17c4028973a40 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor"} -C3L-01142.RNA-Seq.genomic.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.genomic.gdc_realn.bam 9076364435 BAM genomic harmonized CPTAC3 1e9a6446-8dad-4efd-8641-7e56a007a11c 3a60bf9277ff74de1b1da0513782ade4 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor"} -C3L-01142.RNA-Seq.S12_L007_R1.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R1_001.fastq.gz 3877177502 FASTQ S12_L007_R1 unaligned CPTAC3 715d946d-0833-4686-b27c-4328f177eb3a 72e71f6fafe8aeb6dc2bd68f17ad84a0 {"aliquot_tag": "ALQ_115b008d", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01142.RNA-Seq.S12_L007_R2.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R2_001.fastq.gz 3984707975 FASTQ S12_L007_R2 unaligned CPTAC3 4d99975d-30c1-4664-b97e-5fc047d1e034 0b7ff7ae791bd42dc14e245cea13a260 {"aliquot_tag": "ALQ_115b008d", "sample": "S12", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01142.RNA-Seq.transcriptome.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.transcriptome.gdc_realn.bam 9702009127 BAM transcriptome harmonized CPTAC3 505951df-f743-40e1-bcee-e5931893923c 1e0c93e6c644322263d32891485b8675 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor"} -C3L-01142.WGS.N C3L-01142 GBM WGS blood_normal CPT0220250002 CPT0220250002.WholeGenome.RP-1303.bam 55787583476 BAM aligned CPTAC3 7263c993-9921-4057-ab49-fc22479b3e39 3176ca815514ef507d12a64055965974 {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal"} -C3L-01142.WGS.N.hg38 C3L-01142 GBM WGS blood_normal CPT0220250002 25d298e0-e9cb-4417-967b-e12bd47aed51_wgs_gdc_realn.bam 80145635598 BAM harmonized CPTAC3 3d8c241d-0d89-43e9-b612-0b8ebd6f56d8 6efa5b17715c71720150d84ac7f03281 {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal"} -C3L-01142.WGS.T C3L-01142 GBM WGS tumor CPT0218330007 CPT0218330007.WholeGenome.RP-1303.bam 56569499517 BAM aligned CPTAC3 4ca24cd2-23ea-4fad-8a60-22f64db04e2b d6c53347235ea0e268c4e78effb48b8b {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor"} -C3L-01142.WGS.T.hg38 C3L-01142 GBM WGS tumor CPT0218330007 89c5f9a8-85a9-4834-8bd6-6d1150e76f5a_wgs_gdc_realn.bam 84862166502 BAM harmonized CPTAC3 f7b6229b-8f20-4369-b1f0-6f776c32066b 407ea5d74d96c1e91c13e63d69affdf4 {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor"} -C3L-01142.WXS.N C3L-01142 GBM WXS blood_normal CPT0220250002 CPT0220250002.WholeExome.RP-1303.bam 23494813684 BAM aligned CPTAC3 b5bb57ce-b8a7-4e9f-9232-5b4276e2996a d29640e3d19546b9de780053e84bd0ca {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal"} -C3L-01142.WXS.N.hg38 C3L-01142 GBM WXS blood_normal CPT0220250002 25d298e0-e9cb-4417-967b-e12bd47aed51_wxs_gdc_realn.bam 31812849426 BAM harmonized CPTAC3 9c589f2d-4f6d-4a78-88a4-76b158d267ff 04f2290e0ac0f0c4cdd63694ca5891f1 {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal"} -C3L-01142.WXS.T C3L-01142 GBM WXS tumor CPT0218330007 CPT0218330007.WholeExome.RP-1303.bam 22596567202 BAM aligned CPTAC3 a2233662-d93b-484c-a3de-16565c079245 802d4c531596054876276d7c0a782b7d {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor"} -C3L-01142.WXS.T.hg38 C3L-01142 GBM WXS tumor CPT0218330007 89c5f9a8-85a9-4834-8bd6-6d1150e76f5a_wxs_gdc_realn.bam 31249485287 BAM harmonized CPTAC3 bad9c1ce-9a47-4f48-9d8f-7e1bf288c96b 4eab9dc5c7fb8ab6bc1143564dc6a3fc {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor"} -C3L-01146.miRNA-Seq.S26_L008_R1.T C3L-01146 GBM miRNA-Seq tumor CPT0218690010 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L008_R1_001.unaln.bam 155751630 BAM S26_L008_R1 unaligned CPTAC3 b07808cc-ac0c-43b2-9f43-3a3032f32c8a b4163176b312cc72e433ad44ef28be26 {"aliquot_tag": "ALQ_b26899f", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01146.miRNA-Seq.T.hg38 C3L-01146 GBM miRNA-Seq tumor CPT0218690010 62a24bf2-715e-42b4-8738-7a7c3fe9da72_mirnaseq_gdc_realn.bam 180320865 BAM harmonized CPTAC3 9b19d6b4-2c06-4592-a201-f6189d715ae3 69f8242581f67f14bb40627fe735e9dd {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor"} -C3L-01146.RNA-Seq.chimeric.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.chimeric.gdc_realn.bam 33068431 BAM chimeric harmonized CPTAC3 7da0cf40-ae43-4cc0-95b5-27864fe0eb0c 9eb9d942ebf5213cafad694bc51078f2 {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor"} -C3L-01146.RNA-Seq.genomic.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.genomic.gdc_realn.bam 9296103786 BAM genomic harmonized CPTAC3 dece33e2-6f3b-4e7d-a1cc-35b0f412328c 0c85ca323d464e81ea551e3e0ad3e2b2 {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor"} -C3L-01146.RNA-Seq.S17_L008_R1.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R1_001.fastq.gz 3810099551 FASTQ S17_L008_R1 unaligned CPTAC3 7ee15def-b3f5-4f9f-876a-d5b5d58db477 3fe567036d72189bb6288d65bc76b492 {"aliquot_tag": "ALQ_b26899f", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01146.RNA-Seq.S17_L008_R2.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R2_001.fastq.gz 3989925929 FASTQ S17_L008_R2 unaligned CPTAC3 4c23a61a-de61-41ba-99e8-23400a3f9234 e1d60990962ad440c491a14a5652d57b {"aliquot_tag": "ALQ_b26899f", "sample": "S17", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01146.RNA-Seq.transcriptome.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.transcriptome.gdc_realn.bam 10846646271 BAM transcriptome harmonized CPTAC3 347bf7b8-f195-4505-aad0-60f16ca806aa 4dd7b7f585edb1b2c798bb43b57db833 {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor"} -C3L-01146.WGS.N C3L-01146 GBM WGS blood_normal CPT0220330002 CPT0220330002.WholeGenome.RP-1303.bam 56384831654 BAM aligned CPTAC3 3c6b675e-92c2-45c4-9862-bc4ac9546252 425ad7bb0c9a2f73ba64fe3525a630de {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal"} -C3L-01146.WGS.N.hg38 C3L-01146 GBM WGS blood_normal CPT0220330002 222678a1-f4f8-4082-991a-ebd1f9181d29_wgs_gdc_realn.bam 80924153122 BAM harmonized CPTAC3 a48a7d58-0369-4a39-afaf-8eefb1a4fcfb edba4150e2fefb9d61d136700cf1f6d1 {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal"} -C3L-01146.WGS.T C3L-01146 GBM WGS tumor CPT0218690007 CPT0218690007.WholeGenome.RP-1303.bam 64115180365 BAM aligned CPTAC3 d044ac6e-83b9-4442-953a-6c14e8171c5c 22ebce54797da0165760bdc35ef2ca9a {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor"} -C3L-01146.WGS.T.hg38 C3L-01146 GBM WGS tumor CPT0218690007 613b02e9-7089-4a69-b2c4-cd5914dc1882_wgs_gdc_realn.bam 92341306186 BAM harmonized CPTAC3 880f6e26-7395-485f-92f9-0a0e6feea3be 4a1b858d842b84e022f231d9f2b16e26 {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor"} -C3L-01146.WXS.N C3L-01146 GBM WXS blood_normal CPT0220330002 CPT0220330002.WholeExome.RP-1303.bam 23907417802 BAM aligned CPTAC3 9a47bad9-ce3f-46ff-a351-cf38d6ca2ffd dc1267d0bd486a0eab326580fc82816b {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal"} -C3L-01146.WXS.N.hg38 C3L-01146 GBM WXS blood_normal CPT0220330002 222678a1-f4f8-4082-991a-ebd1f9181d29_wxs_gdc_realn.bam 32646232524 BAM harmonized CPTAC3 fb97e443-3b6c-4156-97e8-4f868101e43e 27d3f2d8bb00c512fa6f6fe4f5ea3ac8 {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal"} -C3L-01146.WXS.T C3L-01146 GBM WXS tumor CPT0218690007 CPT0218690007.WholeExome.RP-1303.bam 39434517183 BAM aligned CPTAC3 6851536b-8fcc-45cb-ba33-77c2d940c3af 013a1c1d5aba5579a5c636d6102fb99e {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor"} -C3L-01146.WXS.T.hg38 C3L-01146 GBM WXS tumor CPT0218690007 613b02e9-7089-4a69-b2c4-cd5914dc1882_wxs_gdc_realn.bam 54232476538 BAM harmonized CPTAC3 d575657c-bd3d-46d5-bdbb-24192c872bcb 3e5dfb153c37df7efa94eaecb017675f {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor"} -C3L-01149.MethArray.Green.T C3L-01149 GBM Methylation_Array tumor CPT0218770006 203219720203_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9581a906-6ce2-4f43-bdfa-3b2c347b4270 56712286143337f942835accf5a48f98 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor"} -C3L-01149.MethArray.Red.T C3L-01149 GBM Methylation_Array tumor CPT0218770006 203219720203_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 1a0bc888-438f-4319-8c9f-ce0fc4b1d2da 923d61c6ba24ffe36f0bc7ac7b469498 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor"} -C3L-01149.miRNA-Seq.S149_L008_R1.T C3L-01149 GBM miRNA-Seq tumor CPT0218770009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATTCCT_S149_L008_R1_001.unaln.bam 321003796 BAM S149_L008_R1 unaligned CPTAC3 41f3cc14-bb45-4bb7-af50-1ffbf2148458 6e27eb90f5f1c624c6b9040c59d37daa {"aliquot_tag": "ALQ_1f8d6dbe", "sample": "S149", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01149.miRNA-Seq.T.hg38 C3L-01149 GBM miRNA-Seq tumor CPT0218770009 809a4d7b-851b-4e75-a804-ea7f22491064_mirnaseq_gdc_realn.bam 365282860 BAM harmonized CPTAC3 0190e19a-11ed-46c2-a133-06de89fe8c32 34be33b317bbc8115dfa488e841b53f9 {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor"} -C3L-01149.RNA-Seq.chimeric.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.chimeric.gdc_realn.bam 38765553 BAM chimeric harmonized CPTAC3 795a75fe-009f-484b-8aa4-e3d6f808fada 62ddb49125ee746984cba86c69e7349a {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor"} -C3L-01149.RNA-Seq.genomic.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.genomic.gdc_realn.bam 8407495391 BAM genomic harmonized CPTAC3 4abbebf3-def3-46ff-ad15-d0a936e2a69d 6e648a30102c3f27333cac69ececa8e0 {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor"} -C3L-01149.RNA-Seq.S18_L008_R1.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R1_001.fastq.gz 3863346811 FASTQ S18_L008_R1 unaligned CPTAC3 0c930cce-77e8-4ebd-b0bd-bc7cfa4473be f72e1db3d8c26cb88fe11804fcdb1b29 {"aliquot_tag": "ALQ_1f8d6dbe", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01149.RNA-Seq.S18_L008_R2.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R2_001.fastq.gz 3971137906 FASTQ S18_L008_R2 unaligned CPTAC3 c28cab64-66d0-4d12-a7d3-d7005c4886ef 37263fea70dc1c8a7561b78b44de3170 {"aliquot_tag": "ALQ_1f8d6dbe", "sample": "S18", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01149.RNA-Seq.transcriptome.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.transcriptome.gdc_realn.bam 8479716847 BAM transcriptome harmonized CPTAC3 db261598-764d-4940-b0cf-bacb81de1210 3f7bc025e8a6ffdbe15960f4503ed668 {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor"} -C3L-01149.WGS.N C3L-01149 GBM WGS blood_normal CPT0220350002 CPT0220350002.WholeGenome.RP-1303.bam 69210422044 BAM aligned CPTAC3 09a8205e-ea2b-4465-aa6f-747e5dcbf078 05d4b9d32ebeabffe1fbf7ce1234e409 {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01149.WGS.N.hg38 C3L-01149 GBM WGS blood_normal CPT0220350002 28c09c40-a98f-4641-af84-2405ce473f60_wgs_gdc_realn.bam 99593736756 BAM harmonized CPTAC3 9f432dfa-d7d8-4d94-a885-2a60769ebcc4 a6342af0a6ba0246b1eba3caa0cf6efd {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01149.WGS.T C3L-01149 GBM WGS tumor CPT0218770006 CPT0218770006.WholeGenome.RP-1303.bam 50872173628 BAM aligned CPTAC3 19aa4ef2-396a-4bf7-9f4a-83937de473cb 623d4c88a1a464b4cb9f754a122d14a9 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor"} -C3L-01149.WGS.T.hg38 C3L-01149 GBM WGS tumor CPT0218770006 30ae1a29-cd48-4ee5-81be-215510402651_wgs_gdc_realn.bam 74660152817 BAM harmonized CPTAC3 bbe70dd2-1790-40e6-b036-5088f864cea6 f5db38a66171e229e79f4092b3e6e01f {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor"} -C3L-01149.WXS.N C3L-01149 GBM WXS blood_normal CPT0220350002 CPT0220350002.WholeExome.RP-1303.bam 29203566040 BAM aligned CPTAC3 523337f3-bae4-4369-b1aa-bd18dfad6168 b10dbbb60406dbb00a22cf44a23782d2 {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01149.WXS.N.hg38 C3L-01149 GBM WXS blood_normal CPT0220350002 28c09c40-a98f-4641-af84-2405ce473f60_wxs_gdc_realn.bam 39911861543 BAM harmonized CPTAC3 736f213c-7fc6-49ac-811d-7e0a5d8e3b7b b7a7a8ee483521e806e0c94737199a90 {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01149.WXS.T C3L-01149 GBM WXS tumor CPT0218770006 CPT0218770006.WholeExome.RP-1303.bam 21953723039 BAM aligned CPTAC3 3035caa4-5ba7-446f-8a3e-d1d290e4ee4a 80b004712309f52dbef6e304bd1bdefc {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor"} -C3L-01149.WXS.T.hg38 C3L-01149 GBM WXS tumor CPT0218770006 30ae1a29-cd48-4ee5-81be-215510402651_wxs_gdc_realn.bam 30030929550 BAM harmonized CPTAC3 48348c7c-03b5-44fc-9877-a226d2a15102 284a579379e709a370cf2cb16c54b5b3 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor"} -C3L-01154.MethArray.Green.T C3L-01154 GBM Methylation_Array tumor CPT0218830007 203219650218_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a1c97f2b-4b8d-4915-be2f-152106b7d439 5c88ba605403346f112f6a483c2885af {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor"} -C3L-01154.MethArray.Red.T C3L-01154 GBM Methylation_Array tumor CPT0218830007 203219650218_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8b4e0d55-8d5c-4ccf-86c5-644b55e8cd69 237d4a5bc4e5dd100b4392120987d1e8 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor"} -C3L-01154.miRNA-Seq.S28_L008_R1.T C3L-01154 GBM miRNA-Seq tumor CPT0218830010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L008_R1_001.unaln.bam 199070786 BAM S28_L008_R1 unaligned CPTAC3 99885ab8-6dfb-422e-bd76-45f997ef5e4d 71e38aced63a2fe8c954b274a6d5a48f {"aliquot_tag": "ALQ_7b9cf04e", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01154.miRNA-Seq.T.hg38 C3L-01154 GBM miRNA-Seq tumor CPT0218830010 47cf00e8-baba-4301-b699-54e933962e88_mirnaseq_gdc_realn.bam 225908043 BAM harmonized CPTAC3 a8cb9240-cf12-4de4-8706-79c8dee51891 a8aa92ce324cf5a8e3ed4dbef578ce02 {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor"} -C3L-01154.RNA-Seq.chimeric.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.chimeric.gdc_realn.bam 36811277 BAM chimeric harmonized CPTAC3 51037884-0310-4419-9d36-dd2b2ee1623b bdfa81ffc351eaffc715e0142153fcba {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor"} -C3L-01154.RNA-Seq.genomic.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.genomic.gdc_realn.bam 8986583163 BAM genomic harmonized CPTAC3 034a07e2-2dfb-4c94-8c5a-7dcea3321e79 e08b8e4c8b1a351c84de2153d15e66a6 {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor"} -C3L-01154.RNA-Seq.S19_L008_R1.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R1_001.fastq.gz 4182412620 FASTQ S19_L008_R1 unaligned CPTAC3 60583fa7-45f0-40c0-97db-2d5320e7decf 3fdf3e2fa6428af994b30a5873b71216 {"aliquot_tag": "ALQ_7b9cf04e", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01154.RNA-Seq.S19_L008_R2.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R2_001.fastq.gz 4348545918 FASTQ S19_L008_R2 unaligned CPTAC3 5832bc32-dfa3-484e-b142-cfdf7230220d f28e8e869d805eca8d889ed587060dc2 {"aliquot_tag": "ALQ_7b9cf04e", "sample": "S19", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01154.RNA-Seq.transcriptome.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.transcriptome.gdc_realn.bam 11293531194 BAM transcriptome harmonized CPTAC3 279f022e-9e25-4132-b4cb-8492bce9f594 1b298ba0f1ee5e705a33f2ce91a6efc4 {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor"} -C3L-01154.WGS.N C3L-01154 GBM WGS blood_normal CPT0220370002 CPT0220370002.WholeGenome.RP-1303.bam 54192901483 BAM aligned CPTAC3 b7267ba6-8f3b-438d-a26a-509a259829a5 f20840127e097056f2b5ea429d518983 {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01154.WGS.N.hg38 C3L-01154 GBM WGS blood_normal CPT0220370002 c3419dee-0a62-41b8-934c-b713bc7f713b_wgs_gdc_realn.bam 77363570233 BAM harmonized CPTAC3 c073a2bc-7cd9-47f2-a35f-bc52103a704c c638ded3a0e33021ea861b7b199fcc23 {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01154.WGS.T C3L-01154 GBM WGS tumor CPT0218830007 CPT0218830007.WholeGenome.RP-1303.bam 65854263311 BAM aligned CPTAC3 49f75696-a836-4833-bf5c-8f8e3ac2f4c6 d92f81b6178f9b3b8874bcf4492341b4 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor"} -C3L-01154.WGS.T.hg38 C3L-01154 GBM WGS tumor CPT0218830007 484d1154-cec5-4f8d-8e15-9de7e69d5d22_wgs_gdc_realn.bam 96740046225 BAM harmonized CPTAC3 20c6e2a4-6efe-4671-81e6-f8d9e1b4d393 444a751217d2fe3754f13c760b29eebe {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor"} -C3L-01154.WXS.N C3L-01154 GBM WXS blood_normal CPT0220370002 CPT0220370002.WholeExome.RP-1303.bam 27568043796 BAM aligned CPTAC3 2277f162-dd70-41c4-971e-f2a07e4da2d2 c185b82d858c8bb9afa2d325a1402c3c {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01154.WXS.N.hg38 C3L-01154 GBM WXS blood_normal CPT0220370002 c3419dee-0a62-41b8-934c-b713bc7f713b_wxs_gdc_realn.bam 37553331517 BAM harmonized CPTAC3 bf78d24e-4513-4faf-8499-7428f295d217 70301c5bb188066f42a27e7f50584fa6 {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01154.WXS.T C3L-01154 GBM WXS tumor CPT0218830007 CPT0218830007.WholeExome.RP-1303.bam 30811232723 BAM aligned CPTAC3 897dae8d-bfee-41bf-8a11-f30a70e02333 7a729c74c45d9a980c4ba4f7340171c2 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor"} -C3L-01154.WXS.T.hg38 C3L-01154 GBM WXS tumor CPT0218830007 484d1154-cec5-4f8d-8e15-9de7e69d5d22_wxs_gdc_realn.bam 42581008063 BAM harmonized CPTAC3 f3ba5853-3a43-42a8-97c0-1fd821f5c8e7 434e149d6823a30c0132603fd21e25a1 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor"} -C3L-01155.MethArray.Green.T C3L-01155 GBM Methylation_Array tumor CPT0218890007 203028200100_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 e9a8f834-9b8e-4c98-a203-cb1a4bf46422 bf192615b5230d1eca4ccba0afffd536 {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor"} -C3L-01155.MethArray.Red.T C3L-01155 GBM Methylation_Array tumor CPT0218890007 203028200100_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 a1549404-5555-45fe-a6be-e6babf179014 68dd40c872d57e26b0ec3d82740e3b55 {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor"} -C3L-01155.miRNA-Seq.S29_L008_R1.T C3L-01155 GBM miRNA-Seq tumor CPT0218890010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L008_R1_001.unaln.bam 156401444 BAM S29_L008_R1 unaligned CPTAC3 36b26a13-5142-4de1-b985-235ddc0b93e3 08a85acc579f03d24b1e3fbbf30942ee {"aliquot_tag": "ALQ_312ce8ef", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01155.miRNA-Seq.T.hg38 C3L-01155 GBM miRNA-Seq tumor CPT0218890010 090b9b60-2c19-48a1-bce3-09650174e989_mirnaseq_gdc_realn.bam 179917307 BAM harmonized CPTAC3 a0a9d0af-d92b-4e92-b250-a6a636bd60ab 70edcc04989d3209da6c092161e25744 {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor"} -C3L-01155.RNA-Seq.chimeric.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.chimeric.gdc_realn.bam 30991552 BAM chimeric harmonized CPTAC3 6e65aec2-3f07-4f24-9cf1-0f08b236987f 7017fd65594747f398fdf690bd3d1fd7 {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor"} -C3L-01155.RNA-Seq.genomic.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.genomic.gdc_realn.bam 8068721698 BAM genomic harmonized CPTAC3 56b88a54-e69f-402d-9d71-81ab8e469f36 b5a18d738627d224e6c4606b6fd34aae {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor"} -C3L-01155.RNA-Seq.S20_L008_R1.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R1_001.fastq.gz 3502370250 FASTQ S20_L008_R1 unaligned CPTAC3 d71d8418-991d-4703-927e-878e1ea001f6 052b626e8053a49f2f6c554b5d2665d9 {"aliquot_tag": "ALQ_312ce8ef", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01155.RNA-Seq.S20_L008_R2.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R2_001.fastq.gz 3655076132 FASTQ S20_L008_R2 unaligned CPTAC3 e0720488-9d71-4fea-94a6-9cc46b89a41c 95e729570b607c411ce3733484530c09 {"aliquot_tag": "ALQ_312ce8ef", "sample": "S20", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01155.RNA-Seq.transcriptome.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.transcriptome.gdc_realn.bam 9189011863 BAM transcriptome harmonized CPTAC3 0bbf7ebf-c71a-47e6-953a-e066c3bc57cf 146a81d009400d6d3f344cb7d271858d {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor"} -C3L-01155.WGS.N C3L-01155 GBM WGS blood_normal CPT0220390002 CPT0220390002.WholeGenome.RP-1303.bam 56404646991 BAM aligned CPTAC3 20d670db-fa04-4af2-a354-c8dc2e617f57 4dca9c66aa4fd55fb6a62714da7e0693 {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01155.WGS.N.hg38 C3L-01155 GBM WGS blood_normal CPT0220390002 48de787e-f39f-4052-920f-45a36255ba7b_wgs_gdc_realn.bam 81369207898 BAM harmonized CPTAC3 c4bced1d-cb6c-4837-b4eb-dad1507de56a 899c4fecfaa86449234d5ea64755e986 {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01155.WGS.T C3L-01155 GBM WGS tumor CPT0218890007 CPT0218890007.WholeGenome.RP-1303.bam 58325560961 BAM aligned CPTAC3 707e72e0-9e98-415d-858f-2cd9e7f8a010 4dd90d2092acc540506b3d7e15ae4803 {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor"} -C3L-01155.WGS.T.hg38 C3L-01155 GBM WGS tumor CPT0218890007 5edb7cc0-ff25-4b38-b386-cb8815496b27_wgs_gdc_realn.bam 84867521223 BAM harmonized CPTAC3 896fec72-4491-44f1-b185-b216dcb77b5a 7ef9ec792974068b7c000bf85635ae3e {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor"} -C3L-01155.WXS.N C3L-01155 GBM WXS blood_normal CPT0220390002 CPT0220390002.WholeExome.RP-1303.bam 23280404211 BAM aligned CPTAC3 9ef2d5a1-b304-4dce-bf5a-99be7b42eb79 c3dc0aeb346701f88111dbb2d769f32c {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01155.WXS.N.hg38 C3L-01155 GBM WXS blood_normal CPT0220390002 48de787e-f39f-4052-920f-45a36255ba7b_wxs_gdc_realn.bam 31676628010 BAM harmonized CPTAC3 5d38a524-d69b-423d-a29c-a371940b7c9d 5a859bb7917450fdddb8adae723716ce {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01155.WXS.T C3L-01155 GBM WXS tumor CPT0218890007 CPT0218890007.WholeExome.RP-1303.bam 25791767177 BAM aligned CPTAC3 4b3af174-d7f3-40a9-ac37-50fcb73c5a7b 4c42dd054f4dc4d32aab06ff4f9163eb {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor"} -C3L-01155.WXS.T.hg38 C3L-01155 GBM WXS tumor CPT0218890007 5edb7cc0-ff25-4b38-b386-cb8815496b27_wxs_gdc_realn.bam 35866522533 BAM harmonized CPTAC3 8add108d-632a-4914-8497-49eb33871f3c 57319f02ea797d2dfe3c95ca0325e1cd {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor"} -C3L-01156.MethArray.Green.T C3L-01156 GBM Methylation_Array tumor CPT0218960006 203219650217_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8df14385-ea6f-45e0-9254-e0ec676505e2 b911afbe18ff61f0ef9cf3037e7d5d2f {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor"} -C3L-01156.MethArray.Red.T C3L-01156 GBM Methylation_Array tumor CPT0218960006 203219650217_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5298b6a-ff43-4e79-9fa6-60d65b0e174d 46d47d684d69713551f31d664266de57 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor"} -C3L-01156.miRNA-Seq.S30_L008_R1.T C3L-01156 GBM miRNA-Seq tumor CPT0218960010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L008_R1_001.unaln.bam 199293552 BAM S30_L008_R1 unaligned CPTAC3 89a80b73-715e-4411-9e76-ab0f8068677c 036a985f07cbddae5b5888051288913f {"aliquot_tag": "ALQ_7820ac9b", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01156.miRNA-Seq.T.hg38 C3L-01156 GBM miRNA-Seq tumor CPT0218960010 8995e2de-85d8-41ac-be42-74c2dca76894_mirnaseq_gdc_realn.bam 226123858 BAM harmonized CPTAC3 a51a049a-baed-4a38-979f-9c89750522b7 e721112d98c8accc4d439b96e3edded1 {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor"} -C3L-01156.RNA-Seq.chimeric.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.chimeric.gdc_realn.bam 35379215 BAM chimeric harmonized CPTAC3 ed233da3-8575-4bd3-9119-09c1328e689a f921c0a42513f641c1dc6652273d8bfd {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor"} -C3L-01156.RNA-Seq.genomic.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.genomic.gdc_realn.bam 7883382580 BAM genomic harmonized CPTAC3 59578824-6d48-44eb-ade3-4e5255e01626 2aae05cd7744a9f62cbc6c7b02e64951 {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor"} -C3L-01156.RNA-Seq.S29_L008_R1.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R1_001.fastq.gz 3528330279 FASTQ S29_L008_R1 unaligned CPTAC3 c8f2ee66-29ac-4764-aa67-7e2ecd91ce3a b313e3afbdfdf7f7583c173dd291cfd9 {"aliquot_tag": "ALQ_7820ac9b", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01156.RNA-Seq.S29_L008_R2.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R2_001.fastq.gz 3828609242 FASTQ S29_L008_R2 unaligned CPTAC3 052af4e4-ac86-48ea-8da0-a47bc581918f 63819791cd1762b5061e6ebc471c5f78 {"aliquot_tag": "ALQ_7820ac9b", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01156.RNA-Seq.transcriptome.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.transcriptome.gdc_realn.bam 9327551476 BAM transcriptome harmonized CPTAC3 ef5bb1d1-43f9-4406-be71-b88ef1a154e7 aac5cfa0f4394e95a8b1e8bda6a00645 {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor"} -C3L-01156.WGS.N C3L-01156 GBM WGS blood_normal CPT0220410002 CPT0220410002.WholeGenome.RP-1303.bam 53662836231 BAM aligned CPTAC3 bbc10dd1-8fc4-4ad6-a0bc-aaf15a1fe21b a1702ae08bab6e483dacd0070add2891 {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01156.WGS.N.hg38 C3L-01156 GBM WGS blood_normal CPT0220410002 27f1a6ae-b936-4581-8779-c3fa551c1650_wgs_gdc_realn.bam 76810545077 BAM harmonized CPTAC3 f9c7d2a9-08af-4b2c-b473-cbd25a09e5d8 828730be71f1dc4c60218562f1493cb9 {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01156.WGS.T C3L-01156 GBM WGS tumor CPT0218960006 CPT0218960006.WholeGenome.RP-1303.bam 54646620934 BAM aligned CPTAC3 b4e5e78d-0515-493b-bfa1-07a4a0dfb7d4 00c65988723a8815a26fc93c56ef12d1 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor"} -C3L-01156.WGS.T.hg38 C3L-01156 GBM WGS tumor CPT0218960006 e098b073-e9cc-4344-a7b7-fe7cf5ecc7c3_wgs_gdc_realn.bam 78332236781 BAM harmonized CPTAC3 659dfe0f-91c9-4100-b133-c90d2658ed50 3b2be44e871cb5408eade072024343c5 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor"} -C3L-01156.WXS.N C3L-01156 GBM WXS blood_normal CPT0220410002 CPT0220410002.WholeExome.RP-1303.bam 25688978138 BAM aligned CPTAC3 9ed7bea2-2056-4944-bb33-069102c8b545 3314d6da2db3cab50d260bdae38a702d {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01156.WXS.N.hg38 C3L-01156 GBM WXS blood_normal CPT0220410002 27f1a6ae-b936-4581-8779-c3fa551c1650_wxs_gdc_realn.bam 35112087309 BAM harmonized CPTAC3 a01efd96-c5e2-443c-91d0-fe67c00d2b7e 1b905e1aedd5c871c8000bc0d3f3e4d8 {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01156.WXS.T C3L-01156 GBM WXS tumor CPT0218960006 CPT0218960006.WholeExome.RP-1303.bam 26758612392 BAM aligned CPTAC3 d25eadf2-462e-4fb4-a306-6b29d6147cbd 37e9c211311a5c8bffa388a08aa9f7e4 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor"} -C3L-01156.WXS.T.hg38 C3L-01156 GBM WXS tumor CPT0218960006 e098b073-e9cc-4344-a7b7-fe7cf5ecc7c3_wxs_gdc_realn.bam 37326398795 BAM harmonized CPTAC3 09665d61-6cc6-41b8-9612-e22a37ede079 3bf8617213c5e9fcecc7c3b003573844 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor"} -C3L-01157.MethArray.Green.T C3L-01157 GBM Methylation_Array tumor CPT0199770006 203219650164_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 32b90b79-a686-424a-aba7-33b9a5eba8d7 98f0589afa8268f76c94823ade110985 {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor"} -C3L-01157.MethArray.Red.T C3L-01157 GBM Methylation_Array tumor CPT0199770006 203219650164_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 194b1060-7838-4d55-8798-56c161fa3572 4d623b371e72d37693782ac2c2629b0d {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor"} -C3L-01157.miRNA-Seq.S38_L004_R1.T C3L-01157 GBM miRNA-Seq tumor CPT0199770009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTATAC_S38_L004_R1_001.unaln.bam 309033588 BAM S38_L004_R1 unaligned CPTAC3 9f76f86c-e302-4c89-ab78-1a6d70b491c7 94b3e5aea7f318468ea2e0f239d4e0c4 {"aliquot_tag": "ALQ_5392417a", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01157.miRNA-Seq.T.hg38 C3L-01157 GBM miRNA-Seq tumor CPT0199770009 75bee588-b666-4c4e-9561-44b468392f94_mirnaseq_gdc_realn.bam 342668233 BAM harmonized CPTAC3 5ed674b4-7728-413e-9025-13c5c07cca2b 2010acf6d0a49a6b80f633af1095060b {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor"} -C3L-01157.RNA-Seq.chimeric.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.chimeric.gdc_realn.bam 138899945 BAM chimeric harmonized CPTAC3 3b73be6d-da58-49eb-9f98-3d3cd30a7cb1 e1f14425b8282adf56c2e83173a892d9 {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor"} -C3L-01157.RNA-Seq.genomic.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.genomic.gdc_realn.bam 6263357662 BAM genomic harmonized CPTAC3 bd70d52d-8d95-4df2-b59c-5c0486c5aaa0 88767002a2dfe7e8f9d3d19a09c99dda {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor"} -C3L-01157.RNA-Seq.S10_L003_R1.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R1_001.fastq.gz 2746501963 FASTQ S10_L003_R1 unaligned CPTAC3 7e17f145-b0f4-4db5-8739-87119b0d9500 4ceb14bb56c9758debb290628dfdb78e {"aliquot_tag": "ALQ_5392417a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01157.RNA-Seq.S10_L003_R2.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R2_001.fastq.gz 2884065208 FASTQ S10_L003_R2 unaligned CPTAC3 f9a967f9-6406-40e3-8843-662f83c5f38d 7d9ab6671af4af8f9134b42e377be9b2 {"aliquot_tag": "ALQ_5392417a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01157.RNA-Seq.transcriptome.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.transcriptome.gdc_realn.bam 6390703144 BAM transcriptome harmonized CPTAC3 d3f2edc5-6400-49c5-87e1-2ba173c74919 69ced2aa37bdae93e87cef6397e821c7 {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor"} -C3L-01157.WGS.N C3L-01157 GBM WGS blood_normal CPT0200400002 CPT0200400002.WholeGenome.RP-1303.bam 62002874799 BAM aligned CPTAC3 285ca7b1-1d00-43db-a2cf-62c62859b02b 5f54a1e824d383af84f481f6ff89f26d {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01157.WGS.N.hg38 C3L-01157 GBM WGS blood_normal CPT0200400002 c3b0e158-5c09-4c05-9fb8-32f6b08c8b63_wgs_gdc_realn.bam 87977564481 BAM harmonized CPTAC3 656415e5-82ea-4184-8840-8dfb1cfa8c75 e6227bb570e2f65d0ffd43bfa4262a41 {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01157.WGS.T C3L-01157 GBM WGS tumor CPT0199770006 CPT0199770006.WholeGenome.RP-1303.bam 71598419519 BAM aligned CPTAC3 a0d6f247-4deb-4b78-8769-9d0180bf4769 5c190565c5a8d92ecbf67db2d161809b {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor"} -C3L-01157.WGS.T.hg38 C3L-01157 GBM WGS tumor CPT0199770006 05f468bf-e2ce-480d-ad81-68644619e4ee_wgs_gdc_realn.bam 103506832881 BAM harmonized CPTAC3 3ce52428-a149-4c44-bf49-49b978eed662 4a5477925d78940eb9b79c5f3dfdf0fb {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor"} -C3L-01157.WXS.N C3L-01157 GBM WXS blood_normal CPT0200400002 CPT0200400002.WholeExome.RP-1303.bam 22487358946 BAM aligned CPTAC3 6f2ff738-0f87-4e29-afca-e835c35e53a0 1f79f603b20fe1b9cfc3e6fd91d59da6 {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01157.WXS.N.hg38 C3L-01157 GBM WXS blood_normal CPT0200400002 c3b0e158-5c09-4c05-9fb8-32f6b08c8b63_wxs_gdc_realn.bam 30552698394 BAM harmonized CPTAC3 4c548d4d-a644-43a2-ae5d-7d7b7ba59ac6 3f490db8b1f9c75f6053da6616b3b6e4 {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01157.WXS.T C3L-01157 GBM WXS tumor CPT0199770006 CPT0199770006.WholeExome.RP-1303.bam 28639693248 BAM aligned CPTAC3 2ce3e40c-e135-4c00-84eb-01bc70835751 69ca4149a07826f66d93a368ce8d788f {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor"} -C3L-01157.WXS.T.hg38 C3L-01157 GBM WXS tumor CPT0199770006 05f468bf-e2ce-480d-ad81-68644619e4ee_wxs_gdc_realn.bam 39984156211 BAM harmonized CPTAC3 493a7d81-351a-4cfa-a114-c691d7b968ed e49f436c2b7759089f213c99fe57afd7 {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_c1b26c.MethArray.Green.T C3L-01158 PDA Methylation_Array tumor CPT0171630020 203561450030_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 338e41cb-94cf-4e70-a201-5d728d4eaa94 a53456874ba3215ce87da536db04b3b4 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_c1b26c.MethArray.Red.T C3L-01158 PDA Methylation_Array tumor CPT0171630020 203561450030_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 f5c99572-c417-4d5f-b190-6be9d47555fb 95e0608c10f97e72a32790db8511fecc {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_c1b26c.WGS.T C3L-01158 PDA WGS tumor CPT0171630020 CPT0171630020.WholeGenome.RP-1303.bam 77947699392 BAM aligned CPTAC3 fcbf52e0-3eaa-48f0-8f02-2628928080df 8dfd876c2a4bb02a45f48aabcc314d33 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_c1b26c.WGS.T.hg38 C3L-01158 PDA WGS tumor CPT0171630020 a3da4c4a-e715-44c1-bc5a-2a1cfbd0c4ee_wgs_gdc_realn.bam 110266028424 BAM harmonized CPTAC3 9829625a-e392-4560-b898-c677a3afbbb9 c5a9cece0cbb8c5823957ee9a5738595 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_c1b26c.WXS.T C3L-01158 PDA WXS tumor CPT0171630020 CPT0171630020.WholeExome.RP-1303.bam 70747936289 BAM aligned CPTAC3 a9c6ef7e-e552-48bf-8d86-ad97cd828c25 18c43c10e1f1ef68d5353e30a6373750 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_c1b26c.WXS.T.hg38 C3L-01158 PDA WXS tumor CPT0171630020 a3da4c4a-e715-44c1-bc5a-2a1cfbd0c4ee_wxs_gdc_realn.bam 97100762718 BAM harmonized CPTAC3 0026fb13-a3e7-405e-a4ac-7f108096399b 83a8504ac01cb52f1fa1bfd443c6c56c {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.MethArray.Green.T C3L-01158 PDA Methylation_Array tumor CPT0171630026 203561620053_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 95ad2839-4704-49d4-8290-4e356c8936e5 6e725c1321fefa8010d529f2b0c1028d {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.MethArray.Red.T C3L-01158 PDA Methylation_Array tumor CPT0171630026 203561620053_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 e3f3ac72-1acc-4901-8cf1-69dcc575d8a0 844599bd6c04df52fdc5b24e1d6bf616 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.Targeted.T C3L-01158 PDA Targeted_Sequencing tumor CPT0171630026 CPT0171630026.CustomSelection.RP-1303.PDO-18786.bam 4828424084 BAM aligned CPTAC3 26b3e792-b801-48b8-9b91-0ae139fcc555 00061f66746ff4d5a795986cf7c142eb {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.Targeted.T.hg38 C3L-01158 PDA Targeted_Sequencing tumor CPT0171630026 d50fb1bc-2197-437c-b9d6-b142fe878df6_targetedsequencing_gdc_realn.bam 6651381470 BAM harmonized CPTAC3 440a790c-7e9f-48ed-bdbc-b0483e7f8d35 3d0990eb0ec88f25f41b0927ea8e95a5 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.WGS.T C3L-01158 PDA WGS tumor CPT0171630026 CPT0171630026.WholeGenome.RP-1303.bam 54567905966 BAM aligned CPTAC3 2107111f-8f36-45e4-b3d3-dea6a8a4c90c 52f961df7ddf63a74007d75c3614ecf2 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.WGS.T.hg38 C3L-01158 PDA WGS tumor CPT0171630026 d50fb1bc-2197-437c-b9d6-b142fe878df6_wgs_gdc_realn.bam 77965649620 BAM harmonized CPTAC3 dd325470-f95e-4515-92b7-b6e3f9f61b42 b8cac53ce1e5bf66be39df53b68ca8a4 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.WXS.T C3L-01158 PDA WXS tumor CPT0171630026 CPT0171630026.WholeExome.RP-1303.bam 43909051885 BAM aligned CPTAC3 cc0b88e0-7026-4b54-bbb6-a3a09d280386 d624417699c5b6a927dee701a6a97103 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.DUP_e9a21759.WXS.T.hg38 C3L-01158 PDA WXS tumor CPT0171630026 d50fb1bc-2197-437c-b9d6-b142fe878df6_wxs_gdc_realn.bam 62459308600 BAM harmonized CPTAC3 f72ee660-de37-46ad-840e-a64487b77e77 c7c301f7d5ee379ab96e331ea806c7c2 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01158.MethArray.Green.A C3L-01158 PDA Methylation_Array tissue_normal CPT0171650055 203561620153_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b4269624-ab84-4381-8ab1-d084614b9d0a d5d83b0dbde41c16d94677eeb9b9d265 {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01158.MethArray.Red.A C3L-01158 PDA Methylation_Array tissue_normal CPT0171650055 203561620153_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 5cf053e3-3e92-4953-8783-a9ad3517e4ee 41b1219fb0eb58583c059c8daca9c11a {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01158.miRNA-Seq.S1_L002_R1.T C3L-01158 PDA miRNA-Seq tumor CPT0171630017 190108_UNC31-K00269_0176_AHYGLVBBXX_ATCACG_S1_L002_R1_001.unaln.bam 167468804 BAM S1_L002_R1 unaligned CPTAC3 31e8c10f-13ab-47a2-9e10-ed7187e28df0 e0663ca80e250032ea26c2c0b4267e70 {"aliquot_tag": "ALQ_b588740c", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01158.miRNA-Seq.T.hg38 C3L-01158 PDA miRNA-Seq tumor CPT0171630017 390f11e4-d8d0-41ba-8e37-b4ceceb124f4_mirnaseq_gdc_realn.bam 187473717 BAM harmonized CPTAC3 9ab97b2e-880d-4227-87d9-68f84972e2bf eb249f93efbf5796e833c1ad441887e7 {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor"} -C3L-01158.RNA-Seq.chimeric.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.chimeric.gdc_realn.bam 32806523 BAM chimeric harmonized CPTAC3 185743d3-1be8-4521-ad84-7cc1a154c145 86f19f8ce147d5cd426df03bb7af6dd4 {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor"} -C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.genomic.gdc_realn.bam 12190257066 BAM genomic harmonized CPTAC3 cb20a257-7164-436b-b223-1fa8fed27ca1 0f6b3a14f336a7601115e4c5fbd89dce {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor"} -C3L-01158.RNA-Seq.S7_L002_R1.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R1_001.fastq.gz 4754861470 FASTQ S7_L002_R1 unaligned CPTAC3 ece270eb-efc7-440c-9a45-8c8000ba796c 8faa449e5cf9a16a7b19da3b82f0291e {"aliquot_tag": "ALQ_b588740c", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01158.RNA-Seq.S7_L002_R2.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ S7_L002_R2 unaligned CPTAC3 cc148b01-aa6a-40cf-ac6c-75d6bbedd59b da1dd6c3a66dda928dcc199d64c8dc64 {"aliquot_tag": "ALQ_b588740c", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01158.RNA-Seq.transcriptome.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.transcriptome.gdc_realn.bam 11045165290 BAM transcriptome harmonized CPTAC3 4c0e48ec-5528-4754-a11a-acd621e5515a 2624bbe2737aa5714ade3097e889f8d8 {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor"} -C3L-01158.WGS.N C3L-01158 PDA WGS blood_normal CPT0171560002 CPT0171560002.WholeGenome.RP-1303.bam 60515833377 BAM aligned CPTAC3 301ba45f-36aa-44d0-a7de-d3b450ca4f2e 10ebe6de3cefc7cbc144f9941165eb1e {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01158.WGS.N.hg38 C3L-01158 PDA WGS blood_normal CPT0171560002 81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wgs_gdc_realn.bam 87190218525 BAM harmonized CPTAC3 4b59a227-4b74-463b-b8c6-964f07c841b7 474da798a5c01d369023b994496dd8a6 {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01158.WXS.A C3L-01158 PDA WXS tissue_normal CPT0171650055 CPT0171650055.WholeExome.RP-1303.bam 39910866153 BAM aligned CPTAC3 f6b0e467-6f94-47b2-975d-e6a11ec14ad7 b756fa7b81328859d82c0f4eeff048ce {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01158.WXS.A C3L-01158 PDA WXS tissue_normal CPT0171650057 CPT0171650057.WholeExome.RP-1303.bam 58423074859 BAM aligned CPTAC3 30c7d156-27fd-4dd5-9de1-f34c9b2cc1f5 7502a81ce9204216b87a382f043d859d {"aliquot_tag": "ALQ_5ea444a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01158.WXS.A.hg38 C3L-01158 PDA WXS tissue_normal CPT0171650055 1e789670-d307-4a56-99ab-7bd348c1555e_wxs_gdc_realn.bam 55878504036 BAM harmonized CPTAC3 d80b306c-5c0c-470d-a762-4b277f9acb66 dc01eb5993765358f8e4dcfd528d93fc {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01158.WXS.N C3L-01158 PDA WXS blood_normal CPT0171560002 CPT0171560002.WholeExome.RP-1303.bam 27117657273 BAM aligned CPTAC3 c989a5e9-3ec9-4d76-9896-665db392d8fd 449f6308f9eedcec5f87e21573c19783 {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01158.WXS.N.hg38 C3L-01158 PDA WXS blood_normal CPT0171560002 81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wxs_gdc_realn.bam 36792322242 BAM harmonized CPTAC3 65ade05f-b8cc-4d7d-b501-cd91d08e5885 7609959f62306cac59f64122f92c48aa {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01158.WXS.T C3L-01158 PDA WXS tumor CPT0171630022 CPT0171630022.WholeExome.RP-1303.bam 58476666614 BAM aligned CPTAC3 88698e11-6693-4808-9a68-754b4bade5d4 d1626f094063b8260c8c982171edaf59 {"aliquot_tag": "ALQ_eecfd340", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_c4e018f9.MethArray.Green.T C3L-01160 PDA Methylation_Array tumor CPT0170600018 203561450020_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 7f160d98-c8ee-45b8-882f-9c3dd3af128d 252e8a869042a262cbfccd0e2c232fa5 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_c4e018f9.MethArray.Red.T C3L-01160 PDA Methylation_Array tumor CPT0170600018 203561450020_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 20da77de-bb22-4592-b9d5-8d6703d68dc9 eb683dcc135d39b487529e749a8ea4b8 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_c4e018f9.WGS.T C3L-01160 PDA WGS tumor CPT0170600018 CPT0170600018.WholeGenome.RP-1303.bam 64661419007 BAM aligned CPTAC3 e4454b36-afcf-4a80-a7a8-18d4b3af4cf0 3b727abd21ea98718412b97f20157e8e {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_c4e018f9.WGS.T.hg38 C3L-01160 PDA WGS tumor CPT0170600018 a8c4506f-92ba-4202-9c7b-ad08ebfb3b64_wgs_gdc_realn.bam 92384111277 BAM harmonized CPTAC3 1000b82e-99a4-4743-90b4-625b6dc12984 7277b4142209956bb6558dfa255dd487 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_c4e018f9.WXS.T C3L-01160 PDA WXS tumor CPT0170600018 CPT0170600018.WholeExome.RP-1303.bam 65639438807 BAM aligned CPTAC3 3ad0348b-748f-4318-83ca-d3e13e2a42db 4e2044d8fb0a94391757a5f185fc32c5 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_c4e018f9.WXS.T.hg38 C3L-01160 PDA WXS tumor CPT0170600018 a8c4506f-92ba-4202-9c7b-ad08ebfb3b64_wxs_gdc_realn.bam 91330545140 BAM harmonized CPTAC3 b515de0e-fcee-4a88-85f6-29e4dc115ccc eb74f04693eb9011204a648f9a831134 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.MethArray.Green.T C3L-01160 PDA Methylation_Array tumor CPT0170600024 203561450073_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1951c2f6-4401-471c-803e-6fd787e360cf 2159d6b1bed93b26f41cff198a082633 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.MethArray.Red.T C3L-01160 PDA Methylation_Array tumor CPT0170600024 203561450073_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 0435ae8c-b09a-4e10-b693-36024236cc65 e1b46ce99fbe74a7d1a2a56b2e4b46d9 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.Targeted.T C3L-01160 PDA Targeted_Sequencing tumor CPT0170600024 CPT0170600024.CustomSelection.RP-1303.PDO-18786.bam 5303930441 BAM aligned CPTAC3 c32325ff-ec0c-485c-b6e4-d3423aa3f678 56f548b3c3e0f10e2462a1147c48e09c {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.Targeted.T.hg38 C3L-01160 PDA Targeted_Sequencing tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_targetedsequencing_gdc_realn.bam 7459835184 BAM harmonized CPTAC3 9b3f874f-9473-4d99-b4bd-69cb37f0dc0d 824b087c5c223fae159e438cbd1286ca {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.WGS.T C3L-01160 PDA WGS tumor CPT0170600024 CPT0170600024.WholeGenome.RP-1303.bam 67952930675 BAM aligned CPTAC3 df08c8cd-0ab1-4ea0-9471-4dd7458247d9 c5d6274f471be852614a3a9f0b07e813 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.WGS.T.hg38 C3L-01160 PDA WGS tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_wgs_gdc_realn.bam 96428254780 BAM harmonized CPTAC3 05cb8a97-9225-4a2c-b9e4-048375f3478d 808a5270db25c341e14c9d040aaa7e33 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.WXS.T C3L-01160 PDA WXS tumor CPT0170600024 CPT0170600024.WholeExome.RP-1303.bam 56175912575 BAM aligned CPTAC3 9de76634-b251-4bdd-805d-5070367b7dc9 6b6a142e029fa48832df21f540d3509a {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.DUP_e67b0711.WXS.T.hg38 C3L-01160 PDA WXS tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_wxs_gdc_realn.bam 80069242436 BAM harmonized CPTAC3 ad37577b-d536-4929-9cbc-cb39d4bb9969 7a58e168809bef442c484ba5f55020b2 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-01160.miRNA-Seq.S2_L002_R1.T C3L-01160 PDA miRNA-Seq tumor CPT0170600015 190108_UNC31-K00269_0176_AHYGLVBBXX_CGATGT_S2_L002_R1_001.unaln.bam 221634763 BAM S2_L002_R1 unaligned CPTAC3 e3473974-ec7c-4133-b635-1ca02d4721c9 85eea2ca93ffcd5d5695ed13c472576e {"aliquot_tag": "ALQ_ba516444", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01160.miRNA-Seq.T.hg38 C3L-01160 PDA miRNA-Seq tumor CPT0170600015 fad624ff-e1cb-4c9f-a5fd-4c771225127d_mirnaseq_gdc_realn.bam 241614413 BAM harmonized CPTAC3 313d4c80-9294-44eb-b9a3-a782d4529e2b 687f82ec4c1361fbfe46948ca80e5cdc {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor"} -C3L-01160.RNA-Seq.chimeric.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.chimeric.gdc_realn.bam 33464846 BAM chimeric harmonized CPTAC3 b2322eef-0e56-43c9-89fe-13fe52c61fc1 851c54dccde689630c014b17724744bc {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor"} -C3L-01160.RNA-Seq.genomic.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.genomic.gdc_realn.bam 13484325163 BAM genomic harmonized CPTAC3 76085a29-ab12-480b-b221-6e936e8fc759 4d3159a5259a0069062acfa1f693f9d7 {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor"} -C3L-01160.RNA-Seq.S6_L002_R1.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4360439785 FASTQ S6_L002_R1 unaligned CPTAC3 f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b 7438c37cc32841ff81f6c2df1ddb69d0 {"aliquot_tag": "ALQ_ba516444", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01160.RNA-Seq.S6_L002_R2.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4741609485 FASTQ S6_L002_R2 unaligned CPTAC3 20a9db35-056d-43aa-b71d-dea448930ef0 be78f4274c931011a1fcdb9a22845c67 {"aliquot_tag": "ALQ_ba516444", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01160.RNA-Seq.transcriptome.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.transcriptome.gdc_realn.bam 10090542222 BAM transcriptome harmonized CPTAC3 b5657438-0e30-4433-b161-390a1aedcd35 1b1e7117d4c9f3976b748c3ba7295a52 {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor"} -C3L-01160.WGS.N C3L-01160 PDA WGS blood_normal CPT0167290002 CPT0167290002.WholeGenome.RP-1303.bam 64378887116 BAM aligned CPTAC3 3bc55e0a-e5f9-498b-9516-e25f1b171625 6a31044e1774ec0f6a28050718155cd5 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01160.WGS.N.hg38 C3L-01160 PDA WGS blood_normal CPT0167290002 07384100-195f-4071-a266-1ba880b66180_wgs_gdc_realn.bam 92607286794 BAM harmonized CPTAC3 159ed349-6664-4f63-a807-2c0ec490012b f33f7b553e8b8abcc48964a03f773c99 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01160.WXS.A C3L-01160 PDA WXS tissue_normal CPT0170620038 CPT0170620038.WholeExome.RP-1303.bam 60073456569 BAM aligned CPTAC3 a51fa67d-e540-4267-aa16-d72a3465ba9a 4d9377bf87ca2aa4b9dbb6f2b4292705 {"aliquot_tag": "ALQ_8c16291b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01160.WXS.N C3L-01160 PDA WXS blood_normal CPT0167290002 CPT0167290002.WholeExome.RP-1303.bam 24421148529 BAM aligned CPTAC3 afa7c130-3731-41ca-a718-fbdf0600a69a d111ad4dc20f7c2bd14b5f08e61f54e6 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01160.WXS.N.hg38 C3L-01160 PDA WXS blood_normal CPT0167290002 07384100-195f-4071-a266-1ba880b66180_wxs_gdc_realn.bam 33237579668 BAM harmonized CPTAC3 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 8f69626d2497a615179f52cf6589d1b6 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01160.WXS.T C3L-01160 PDA WXS tumor CPT0170600020 CPT0170600020.WholeExome.RP-1303.bam 47421435720 BAM aligned CPTAC3 4f64a688-7914-4871-97f8-40c38bc3bfc0 4dc9caa67b8f17185b3caa5e2bda076a {"aliquot_tag": "ALQ_e116c308", "gdc_sample_type": "Primary Tumor"} -C3L-01182.MethArray.Green.Tpb C3L-01182 AML Methylation_Array tumor_peripheral_blood CPT0338160001 205707890143_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e5428025-e008-40fe-9537-e0748fe03957 9627f2fbd75c66f1a19c6dfcd9a254db {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.MethArray.Red.Tpb C3L-01182 AML Methylation_Array tumor_peripheral_blood CPT0338160001 205707890143_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 2356c956-4851-4e4f-b0d6-c52da5b2c3c1 1be172b40339f9431643eefcd6bc25cc {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.miRNA-Seq.S22_L001_R1.Tpb C3L-01182 AML miRNA-Seq tumor_peripheral_blood CPT0338140004 220125_UNC32-K00270_0311_AHMNYYBBXY_TGACCA_S22_L001_R1_001.unaln.bam 318733137 BAM S22_L001_R1 unaligned CPTAC3 fa6fc1c3-ff21-4339-84c4-8566715d6a19 dac3a5718cd1fa4aec3ab39f8c440df0 {"aliquot_tag": "ALQ_a59b9bf0", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.miRNA-Seq.Tpb.hg38 C3L-01182 AML miRNA-Seq tumor_peripheral_blood CPT0338140004 c3b964ae-40af-4dbe-b2c2-0eda709dd565_mirnaseq_gdc_realn.bam 364034201 BAM harmonized CPTAC3 1ee59aa3-3d19-464d-8236-d88b0e2c31b4 cb995f374208280f8d51ad400f8c85e0 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.RNA-Seq.chimeric.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.chimeric.gdc_realn.bam 223102924 BAM chimeric harmonized CPTAC3 18d6fcdc-5d27-4490-9eb5-7af91ede22f7 fdbd6a14f06ef240edd4baafb6fdeff8 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.RNA-Seq.genomic.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.genomic.gdc_realn.bam 5572543578 BAM genomic harmonized CPTAC3 4689e2e4-10aa-472a-b7b0-897370f61311 77b3a953a442e7dad921686c77edcfe7 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.RNA-Seq.S29_L008_R1.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R1_001.fastq.gz 2683736462 FASTQ S29_L008_R1 unaligned CPTAC3 3364d291-2534-49ae-b9e4-536ea85d6c47 f5e6873856eb9d9565d38a4343804916 {"aliquot_tag": "ALQ_a59b9bf0", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.RNA-Seq.S29_L008_R2.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R2_001.fastq.gz 2896718250 FASTQ S29_L008_R2 unaligned CPTAC3 22838a11-4def-4406-a04d-b9cfdfee17d2 a08725d2efc48ee9599d2e866c1483fb {"aliquot_tag": "ALQ_a59b9bf0", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.RNA-Seq.transcriptome.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.transcriptome.gdc_realn.bam 4297487254 BAM transcriptome harmonized CPTAC3 9b295ada-4f40-424b-b26e-1e89960bf526 e9d005081f333ca887a3e2f0671c0023 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.WGS.Nbc C3L-01182 AML WGS buccal_normal CPT0338180003 CPT0338180003.WholeGenome.RP-2158.bam 49209749471 BAM aligned CPTAC3 3086d82e-74c9-4bba-a245-98cf41b540dd fee5a8fa4379875c9aa7052a0f9b4bb7 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01182.WGS.Nbc.hg38 C3L-01182 AML WGS buccal_normal CPT0338180003 a3d7c356-f06c-42e9-86d5-945264790f85_wgs_gdc_realn.bam 166664638598 BAM harmonized CPTAC3 d7132b30-16af-41cd-a0be-7ed4971b0d12 70013bbe24fc361615e7cc2eed287f95 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01182.WGS.Tpb C3L-01182 AML WGS tumor_peripheral_blood CPT0338160001 CPT0338160001.WholeGenome.RP-2158.bam 41162131471 BAM aligned CPTAC3 7457b708-7968-445d-92b4-77f9294e1f8b f174c0b511291e33a5ec38f124172ac4 {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.WGS.Tpb.hg38 C3L-01182 AML WGS tumor_peripheral_blood CPT0338160001 204def57-8086-4ef1-b2e8-1eec67459146_wgs_gdc_realn.bam 118587662579 BAM harmonized CPTAC3 9203d3b3-eb05-4923-989d-1c8abb8a42ea d08994bb9daa2c53ad35f9d54350887b {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.WXS.Nbc C3L-01182 AML WXS buccal_normal CPT0338180003 CPT0338180003.WholeExome.RP-1303.bam 19894836681 BAM aligned CPTAC3 9c4439c5-4676-4a10-b988-b46075f1174e 2bdbc35672ab27cd2a1058f9af984fe0 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01182.WXS.Nbc.hg38 C3L-01182 AML WXS buccal_normal CPT0338180003 a3d7c356-f06c-42e9-86d5-945264790f85_wxs_gdc_realn.bam 27428631714 BAM harmonized CPTAC3 22ab3498-8a5a-40a2-ae0d-5a1c43a40b3e 2180cc91bc81295bc527d220d1268e39 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01182.WXS.Tpb C3L-01182 AML WXS tumor_peripheral_blood CPT0338160001 CPT0338160001.WholeExome.RP-1303.bam 28816819387 BAM aligned CPTAC3 017cd4a9-15f2-4e98-b6aa-b98512225763 e93d2ece70c157dfb8bf00d6c71d551f {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01182.WXS.Tpb.hg38 C3L-01182 AML WXS tumor_peripheral_blood CPT0338160001 204def57-8086-4ef1-b2e8-1eec67459146_wxs_gdc_realn.bam 39867603059 BAM harmonized CPTAC3 785e0821-0b17-45c6-bd0b-669c180df2fc 5d527931c13ffc3a059c57ec085bcd96 {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01187.MethArray.Green.Tbm C3L-01187 AML Methylation_Array tumor_bone_marrow CPT0338430002 205555390128_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 c2e662b9-310e-4962-aa84-1ec287040472 b89172c2372c1dca44f03966f295332e {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.MethArray.Red.Tbm C3L-01187 AML Methylation_Array tumor_bone_marrow CPT0338430002 205555390128_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 e3428ba2-22b9-4a68-9dba-3f948a7b2c24 2e0bd190d81f9b9eb0ffcff2089e3b89 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.miRNA-Seq.S29_L007_R1.Tbm C3L-01187 AML miRNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCATTC_S29_L007_R1_001.unaln.bam 312695347 BAM S29_L007_R1 unaligned CPTAC3 868e5fcb-7d24-4d1a-803d-b0226a570ff5 0d348ddcfd8341266194b4976890563a {"aliquot_tag": "ALQ_93755ad6", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.miRNA-Seq.Tbm.hg38 C3L-01187 AML miRNA-Seq tumor_bone_marrow CPT0338420002 88f604d7-a73b-4c2c-8ecd-033cf6ae804b_mirnaseq_gdc_realn.bam 339311267 BAM harmonized CPTAC3 487793ef-e987-409e-9305-f6cbd65c7566 b2431e8cbdddac7b72d702f6034502a4 {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.RNA-Seq.chimeric.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.chimeric.gdc_realn.bam 101722919 BAM chimeric harmonized CPTAC3 771ce5b4-6775-4d0b-b121-650de0c6bba1 bff44ad986fbbe867297cf834333f029 {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.RNA-Seq.genomic.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.genomic.gdc_realn.bam 7315628890 BAM genomic harmonized CPTAC3 9c5d12b5-97f0-419e-82bf-f2efc4f298e7 b649309c87ff09c570223d858f528ea1 {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.RNA-Seq.S15_L004_R1.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R1_001.fastq.gz 3753235852 FASTQ S15_L004_R1 unaligned CPTAC3 36a6daf5-34a1-4963-b49d-99fedf970fb3 1a4ea75c3b533461ca692906319f11e0 {"aliquot_tag": "ALQ_93755ad6", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.RNA-Seq.S15_L004_R2.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R2_001.fastq.gz 4042840966 FASTQ S15_L004_R2 unaligned CPTAC3 b0aace93-074d-4c07-9e93-9c9e28d62cd3 4cfd0c04ff16b563c7e11b6d15595e12 {"aliquot_tag": "ALQ_93755ad6", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.RNA-Seq.transcriptome.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.transcriptome.gdc_realn.bam 9775894952 BAM transcriptome harmonized CPTAC3 eb15d193-e667-4e5a-b06f-b653db49fc92 29b1923ade6b7bb80c11b5c58c6b9d6c {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.WGS.Tbm C3L-01187 AML WGS tumor_bone_marrow CPT0338430002 CPT0338430002.WholeGenome.RP-2158.bam 43790738502 BAM aligned CPTAC3 1a0e092d-c61e-4f76-95e0-20bb2377ad0a 839a1b10357a233811e0a8f44811f824 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.WGS.Tbm.hg38 C3L-01187 AML WGS tumor_bone_marrow CPT0338430002 1863f9ce-3290-488b-9291-8325fe6a6608_wgs_gdc_realn.bam 126568595557 BAM harmonized CPTAC3 7d3e6c79-f869-4a7a-a1d6-fb496853d8e8 ee4178624b4ec3ca4f521b4ba2aecbf0 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.WXS.Nbc C3L-01187 AML WXS buccal_normal CPT0338440004 CPT0338440004.WholeExome.RP-1303.bam 26631554741 BAM aligned CPTAC3 c758d3d2-48c8-45ed-baee-38459fa1b9dd 492171df2f5ffe3075e3685b9521d7c2 {"aliquot_tag": "ALQ_f5560a43", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01187.WXS.Nbc.hg38 C3L-01187 AML WXS buccal_normal CPT0338440004 0511313c-45b8-4efc-ada5-2ba9a2cc67a3_wxs_gdc_realn.bam 35989060288 BAM harmonized CPTAC3 ec6f0fdb-2025-4824-8be4-aea9c55ebb72 430a24383d3fd8b4d29b285fb91e1ceb {"aliquot_tag": "ALQ_f5560a43", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01187.WXS.Tbm C3L-01187 AML WXS tumor_bone_marrow CPT0338430002 CPT0338430002.WholeExome.RP-1303.bam 30138786215 BAM aligned CPTAC3 9b909215-8af2-4abd-bc19-aa8ab6cc55b6 5c7dc01877c0d62944f24ec340ebd76c {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01187.WXS.Tbm.hg38 C3L-01187 AML WXS tumor_bone_marrow CPT0338430002 1863f9ce-3290-488b-9291-8325fe6a6608_wxs_gdc_realn.bam 41773581801 BAM harmonized CPTAC3 921dcbd0-ce38-4af9-aea5-8c31b4105cce 5585d5e2ca8ecd94230dd3bdcee29173 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.MethArray.Green.Tbm C3L-01188 AML Methylation_Array tumor_bone_marrow CPT0338510002 205589740003_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a627a14e-bb18-49a0-bb48-0da69eb679f3 87f0ad020cd6a9352c067c05dc409b5a {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.MethArray.Red.Tbm C3L-01188 AML Methylation_Array tumor_bone_marrow CPT0338510002 205589740003_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 87350985-31e0-4a03-8095-a430e169f6b4 80306902795351d65009b3ec6116e330 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.miRNA-Seq.S30_L007_R1.Tbm C3L-01188 AML miRNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCCCGA_S30_L007_R1_001.unaln.bam 250272970 BAM S30_L007_R1 unaligned CPTAC3 98da385e-768d-4444-9f28-cea94bb1e460 bfd13b6fc1fb4e9af5766d74482ae844 {"aliquot_tag": "ALQ_d9c54277", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.miRNA-Seq.Tbm.hg38 C3L-01188 AML miRNA-Seq tumor_bone_marrow CPT0338480002 7fc7f4c0-1683-4b62-be1e-d3b1e56cb736_mirnaseq_gdc_realn.bam 265557404 BAM harmonized CPTAC3 c226ddd7-e030-4a51-accf-a0b774d321e2 b5a0ed88ed6bf6fec5ad4690dc6e8a59 {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.RNA-Seq.chimeric.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.chimeric.gdc_realn.bam 78291770 BAM chimeric harmonized CPTAC3 f6d2dea8-8d00-4100-829d-f6118be15db9 0b7427e92237825e4791c14c9f00ab06 {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.RNA-Seq.genomic.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.genomic.gdc_realn.bam 7695454826 BAM genomic harmonized CPTAC3 5654dad6-c513-4469-b5ab-9b4ea7d44b4f 92f4eff4953a144a166827407e51e7da {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.RNA-Seq.S13_L004_R1.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R1_001.fastq.gz 3897699936 FASTQ S13_L004_R1 unaligned CPTAC3 65a13af0-794a-4f67-954b-26d8b22325fe bf6c28a5ff3561252a6dcade63632f54 {"aliquot_tag": "ALQ_d9c54277", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.RNA-Seq.S13_L004_R2.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R2_001.fastq.gz 4168713236 FASTQ S13_L004_R2 unaligned CPTAC3 716b4d9b-71cf-41ad-828b-d289d663f9bc eedbe4404faf802761e0a0f7af59f46a {"aliquot_tag": "ALQ_d9c54277", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.RNA-Seq.transcriptome.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.transcriptome.gdc_realn.bam 11090586487 BAM transcriptome harmonized CPTAC3 7984b743-45a7-44b8-8832-89be083c290c f6faf59c526937348257172c9aeb0a19 {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.WGS.Nbc C3L-01188 AML WGS buccal_normal CPT0338520002 CPT0338520002.WholeGenome.RP-2158.bam 49609623456 BAM aligned CPTAC3 9422e5ad-348f-40cd-a879-d8c6f0a9a302 4a9722d2a6d63a8296dc03ba21ac4cf0 {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01188.WGS.Nbc.hg38 C3L-01188 AML WGS buccal_normal CPT0338520002 3bdffbda-35b4-4a13-a102-3979d363b53d_wgs_gdc_realn.bam 147582359097 BAM harmonized CPTAC3 f50beef2-41e8-4cab-828a-3d2adc6d21eb 86f513926e55d6650a76d0c8325b0277 {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01188.WGS.Tbm C3L-01188 AML WGS tumor_bone_marrow CPT0338510002 CPT0338510002.WholeGenome.RP-2158.bam 49742579452 BAM aligned CPTAC3 fbf77026-e596-45fa-9ca6-9d851fde1ec7 1a65f4de79e172f851a016b2a80ec690 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.WGS.Tbm.hg38 C3L-01188 AML WGS tumor_bone_marrow CPT0338510002 52d511e6-0272-45e6-a597-06aae5d26918_wgs_gdc_realn.bam 151199148802 BAM harmonized CPTAC3 443d5fcc-56db-4bb1-8765-0b2ae5399577 cb608e06ba219880bd6b43c26ce96ddc {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.WXS.Nbc C3L-01188 AML WXS buccal_normal CPT0338520002 CPT0338520002.WholeExome.RP-1303.bam 20317600042 BAM aligned CPTAC3 f37ee0e5-4b23-4a2f-bf96-333435ef3ea2 6add0a75b800b2fb442511c02b0d8cbe {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01188.WXS.Nbc.hg38 C3L-01188 AML WXS buccal_normal CPT0338520002 3bdffbda-35b4-4a13-a102-3979d363b53d_wxs_gdc_realn.bam 27611894401 BAM harmonized CPTAC3 ff371b49-e65e-4800-bbe1-788160cc302d 04c86f103ae901f0a16f1e5f5b84ce47 {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01188.WXS.Tbm C3L-01188 AML WXS tumor_bone_marrow CPT0338510002 CPT0338510002.WholeExome.RP-1303.bam 21800123676 BAM aligned CPTAC3 96328a39-5c15-45ab-bed0-86402faf7893 9145b511fb9791cbefb1cbc856c8b864 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01188.WXS.Tbm.hg38 C3L-01188 AML WXS tumor_bone_marrow CPT0338510002 52d511e6-0272-45e6-a597-06aae5d26918_wxs_gdc_realn.bam 29793720760 BAM harmonized CPTAC3 f56befc9-9d5c-4c40-8602-a1cd336fbb93 527dab6e7665e461a19c18b9b4f197d6 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.MethArray.Green.Tbm C3L-01201 AML Methylation_Array tumor_bone_marrow CPT0325890002 205555380136_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fc91136f-88dd-45f7-b8a3-99da25f997a5 31dd9db67e75561365d165f9d0ba23f6 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.MethArray.Red.Tbm C3L-01201 AML Methylation_Array tumor_bone_marrow CPT0325890002 205555380136_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 489fcf92-cd4a-4d7b-9bd3-f7e9dba97221 aa51471d278fe4915769157b7abf2147 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.miRNA-Seq.S14_L001_R1.Tbm C3L-01201 AML miRNA-Seq tumor_bone_marrow CPT0325900002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTAGAG_S14_L001_R1_001.unaln.bam 359438691 BAM S14_L001_R1 unaligned CPTAC3 a082c4d8-77aa-4cde-95cd-71bb441de330 3bfd471b3a4d4cff7876012eac3826dd {"aliquot_tag": "ALQ_f8567b36", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.miRNA-Seq.Tbm.hg38 C3L-01201 AML miRNA-Seq tumor_bone_marrow CPT0325900002 3e12d953-0f85-4566-852e-fcb6f9e0b131_mirnaseq_gdc_realn.bam 377852908 BAM harmonized CPTAC3 8d6e447d-2937-48e2-969f-52c9b29a07f1 1dce1ded02dba5a1104f50c9924d4df1 {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.RNA-Seq.chimeric.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.chimeric.gdc_realn.bam 111970743 BAM chimeric harmonized CPTAC3 e5eab3cf-25fe-4c70-893c-19a4b7826949 7b8ef01095acdbb6f6115768eabf4732 {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.RNA-Seq.genomic.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.genomic.gdc_realn.bam 7486083855 BAM genomic harmonized CPTAC3 68b2ccb5-2e54-4666-b93b-27c8bd0e1eb2 557d24bf4e61660cc5f4f288310fc382 {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.RNA-Seq.S13_L004_R1.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 3769469819 FASTQ S13_L004_R1 unaligned CPTAC3 1ee6cfbe-280d-411c-bf00-f541cc3ff6db 3fe22e7f0d3d31675aa26029e7ad09fd {"aliquot_tag": "ALQ_f8567b36", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.RNA-Seq.S13_L004_R2.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 3999973406 FASTQ S13_L004_R2 unaligned CPTAC3 02d60360-a6a6-409f-bf80-438b462b4daf 5231906217fed12fa6b697f3117e4b70 {"aliquot_tag": "ALQ_f8567b36", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.RNA-Seq.transcriptome.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.transcriptome.gdc_realn.bam 9225521000 BAM transcriptome harmonized CPTAC3 83e0ba3a-6c81-4aa5-9dfe-c118c39cff23 6b7fb6626141775db5e7995b908f6a5f {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.WGS.Tbm C3L-01201 AML WGS tumor_bone_marrow CPT0325890002 CPT0325890002.WholeGenome.RP-2158.bam 51898633882 BAM aligned CPTAC3 e2abcbb2-9bb3-43ed-90dc-8503740d56d8 34e304e13b731b5b861a0163192c9203 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.WGS.Tbm.hg38 C3L-01201 AML WGS tumor_bone_marrow CPT0325890002 21f6264c-abd6-4c1f-9874-2b8fffda42c9_wgs_gdc_realn.bam 155628477659 BAM harmonized CPTAC3 5127a5c1-38bf-47ea-82da-200b0fb36795 c20fab3db3a39a0c8989fd182ff140c0 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.WXS.Nbc C3L-01201 AML WXS buccal_normal CPT0325970003 CPT0325970003.WholeExome.RP-1303.bam 24228241310 BAM aligned CPTAC3 c4a364ad-618c-4685-a2e1-cd988655c576 ac8017b0ce7e6d064f6d56903ab09fd8 {"aliquot_tag": "ALQ_3d7197b0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01201.WXS.Nbc.hg38 C3L-01201 AML WXS buccal_normal CPT0325970003 04a42e33-ba61-4888-9dc5-0b8abd04d924_wxs_gdc_realn.bam 33562656252 BAM harmonized CPTAC3 606c41b0-38ac-411d-81a7-5cb0ab967a8e 430cd31d3df995155d6bc119fcc2955c {"aliquot_tag": "ALQ_3d7197b0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01201.WXS.Tbm C3L-01201 AML WXS tumor_bone_marrow CPT0325890002 CPT0325890002.WholeExome.RP-1303.bam 21901032174 BAM aligned CPTAC3 68682607-d80c-4590-8a6b-d98d6a061931 45fc365b1c435df4a2440f90d5edf5b2 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01201.WXS.Tbm.hg38 C3L-01201 AML WXS tumor_bone_marrow CPT0325890002 21f6264c-abd6-4c1f-9874-2b8fffda42c9_wxs_gdc_realn.bam 30710997531 BAM harmonized CPTAC3 34f6ef17-ed26-477a-bc53-301f862bd5bd 9cdeced8d69b40c75e8a9382eae31945 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.MethArray.Green.Tbm C3L-01202 AML Methylation_Array tumor_bone_marrow CPT0165960002 203561450027_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62175ef4-cfcd-4364-8e2c-37184338e00b 81fc5e9bc94d063007e4d4d5418b5cd8 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.MethArray.Red.Tbm C3L-01202 AML Methylation_Array tumor_bone_marrow CPT0165960002 203561450027_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 c3f19b2b-2f81-4cc7-9858-c6497256b3b5 e0fb1f3bd9170c56cc3c1eef06cb84e1 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.miRNA-Seq.S20_L001_R1.Tbm C3L-01202 AML miRNA-Seq tumor_bone_marrow CPT0165970002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGGCC_S20_L001_R1_001.unaln.bam 178549955 BAM S20_L001_R1 unaligned CPTAC3 e4e9be38-fe77-43fd-b134-d38b87ee7fae 006034522f39f43e180a70fff60bef3b {"aliquot_tag": "ALQ_e0ca815a", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.miRNA-Seq.Tbm.hg38 C3L-01202 AML miRNA-Seq tumor_bone_marrow CPT0165970002 698980c1-3c87-457e-8702-d7201948ffa8_mirnaseq_gdc_realn.bam 198988702 BAM harmonized CPTAC3 6d8f0390-9547-4a31-ae2b-7fc8c064ad52 268c6384e8a09296cbeadf6e74628da3 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.RNA-Seq.chimeric.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.chimeric.gdc_realn.bam 31884098 BAM chimeric harmonized CPTAC3 0b0fcf3d-7e8a-4dc6-856e-6c86f129ef7c 8cf19f3f038a2c6c6334b566426f7b04 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.RNA-Seq.genomic.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.genomic.gdc_realn.bam 8476261747 BAM genomic harmonized CPTAC3 14b0cfaa-c6e7-4ee9-84b6-b4c7efe91ae1 c7e367bd3d7559020a497371f6e55b46 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.RNA-Seq.S35_L006_R1.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R1_001.fastq.gz 4009177377 FASTQ S35_L006_R1 unaligned CPTAC3 671428b2-fc87-432e-9bbc-d2690fea4ec0 fa097c1134dea83e06b4cebb1e22cde2 {"aliquot_tag": "ALQ_e0ca815a", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.RNA-Seq.S35_L006_R2.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R2_001.fastq.gz 4733260248 FASTQ S35_L006_R2 unaligned CPTAC3 ca4c00d1-c8a6-4326-8e11-c02894955b93 df65615b341165f0068200216b709488 {"aliquot_tag": "ALQ_e0ca815a", "sample": "S35", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.RNA-Seq.transcriptome.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.transcriptome.gdc_realn.bam 9295673688 BAM transcriptome harmonized CPTAC3 afd7c1e9-b6b1-4010-ae3c-5a4484476c62 d711dc1bac7c4c558fd0526fbfe82071 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.WGS.Nbc C3L-01202 AML WGS buccal_normal CPT0166020003 CPT0166020003.WholeGenome.RP-1303.bam 71226752030 BAM aligned CPTAC3 212831ff-a243-416b-8d61-46dd8cdbcb8a 3aebfbd36374b266376d5ef29c29bc81 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01202.WGS.Nbc.hg38 C3L-01202 AML WGS buccal_normal CPT0166020003 1bb452c0-b720-4f49-a565-b4aae0d35af8_wgs_gdc_realn.bam 105629343475 BAM harmonized CPTAC3 dc06e74b-457a-466a-96eb-bae0b949c050 101c9835a06e028bad900c5d27d41870 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01202.WGS.Tbm C3L-01202 AML WGS tumor_bone_marrow CPT0165960002 CPT0165960002.WholeGenome.RP-1303.bam 66510350843 BAM aligned CPTAC3 edeaa0f0-0b05-4fa0-86c2-18f3ca66753e eed6ff9ce3099c5583156f0c660d7fd2 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.WGS.Tbm.hg38 C3L-01202 AML WGS tumor_bone_marrow CPT0165960002 eea66d9d-5e3f-4738-9bde-970a7b4c5365_wgs_gdc_realn.bam 95869349549 BAM harmonized CPTAC3 c4e035b2-76ee-4d67-843d-1f18990e3bb1 ed0cc36c7135fe31ab7f33e75ec4a777 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.WXS.Nbc C3L-01202 AML WXS buccal_normal CPT0166020003 CPT0166020003.WholeExome.RP-1303.bam 22704168968 BAM aligned CPTAC3 cb1fdf79-bd08-43b0-9e60-3e8a4351cf65 bbf8b0818b99f5b992574f3d2f83ffa6 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01202.WXS.Nbc.hg38 C3L-01202 AML WXS buccal_normal CPT0166020003 1bb452c0-b720-4f49-a565-b4aae0d35af8_wxs_gdc_realn.bam 31344317683 BAM harmonized CPTAC3 27a3e95a-5366-4bd7-949d-a684996b8f00 c27f3534a37bf870d2025dc3fd179636 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01202.WXS.Tbm C3L-01202 AML WXS tumor_bone_marrow CPT0165960002 CPT0165960002.WholeExome.RP-1303.bam 18187135593 BAM aligned CPTAC3 4d81aae4-3d53-46b6-a9cf-c03c950b61e1 10a8da47ef26e1ebe77bb15031c1b691 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01202.WXS.Tbm.hg38 C3L-01202 AML WXS tumor_bone_marrow CPT0165960002 eea66d9d-5e3f-4738-9bde-970a7b4c5365_wxs_gdc_realn.bam 25309624795 BAM harmonized CPTAC3 f646b462-2c4e-4530-a55a-0b86c3b28f3e 5cc01f191f82e7f2f1af0511dd4b1518 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.MethArray.Green.Tbm C3L-01205 AML Methylation_Array tumor_bone_marrow CPT0166060002 203561450020_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0496a747-2b80-4a9d-ba5c-9bd215950dc4 e935f79707fd2a41932bd411923253cb {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.MethArray.Red.Tbm C3L-01205 AML Methylation_Array tumor_bone_marrow CPT0166060002 203561450020_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 8c24098b-aa96-4bee-8f5b-a25f970d2a0a 5518c59ba65114de794c0bde6ee1ab70 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.miRNA-Seq.S21_L001_R1.Tbm C3L-01205 AML miRNA-Seq tumor_bone_marrow CPT0166070002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTTTCG_S21_L001_R1_001.unaln.bam 149405344 BAM S21_L001_R1 unaligned CPTAC3 3785387e-4d09-4f75-aa0c-231f7e6f687c 8c5516987f8a77a2b25ad10f4c3814c0 {"aliquot_tag": "ALQ_f62dca0f", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.miRNA-Seq.Tbm.hg38 C3L-01205 AML miRNA-Seq tumor_bone_marrow CPT0166070002 98e6da3e-258a-4ed5-97e6-d569372a7ee3_mirnaseq_gdc_realn.bam 167273187 BAM harmonized CPTAC3 0a970929-4ebc-45cb-ad12-5b7b5f8448d6 8a888b4514c1b6b0ee8cf7892cb48bf9 {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.RNA-Seq.chimeric.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.chimeric.gdc_realn.bam 30297795 BAM chimeric harmonized CPTAC3 d156b2f0-8607-48e2-a571-a36cffea66e1 c98bd925e01c0523c72c8b3a0aa91300 {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.RNA-Seq.genomic.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.genomic.gdc_realn.bam 9912729752 BAM genomic harmonized CPTAC3 6590ba57-8695-4126-924c-6e9d488f990a b986eed777248df1a93b270ecd3c5add {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.RNA-Seq.S39_L007_R1.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R1_001.fastq.gz 4121313094 FASTQ S39_L007_R1 unaligned CPTAC3 ea097e68-4b09-4511-b477-a23aba708ea8 bf258dd5f35bd10ca355d6c697401a10 {"aliquot_tag": "ALQ_f62dca0f", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.RNA-Seq.S39_L007_R2.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R2_001.fastq.gz 4699564011 FASTQ S39_L007_R2 unaligned CPTAC3 204844aa-3ac0-4c3d-9e14-df05ac393091 15c740f7583e9bd77ce98c2077c00971 {"aliquot_tag": "ALQ_f62dca0f", "sample": "S39", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.RNA-Seq.transcriptome.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.transcriptome.gdc_realn.bam 10093508801 BAM transcriptome harmonized CPTAC3 2e96b365-7865-4aa8-a3d6-e9bbacf340b5 2e63c7017b08e4640ee7a98bbed66844 {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.WGS.Nbc C3L-01205 AML WGS buccal_normal CPT0166100002 CPT0166100002.WholeGenome.RP-1303.bam 92186318736 BAM aligned CPTAC3 a5bffa45-3250-4de7-a007-40c26069060d 2ee73e5ca5aebc0ad28fd602b32d28d0 {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01205.WGS.Nbc.hg38 C3L-01205 AML WGS buccal_normal CPT0166100002 63ed98ef-951d-4914-b17f-d6728cb962f3_wgs_gdc_realn.bam 181015257320 BAM harmonized CPTAC3 78af2650-07ba-4252-853f-22a0e4f310d5 d21259e224e8fb6d5d92e094ca01d0af {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01205.WGS.Tbm C3L-01205 AML WGS tumor_bone_marrow CPT0166060002 CPT0166060002.WholeGenome.RP-1303.bam 65860631035 BAM aligned CPTAC3 fd90b68b-d860-4e1d-9fef-f706b5b514e8 9693b703b858e4181c3e63529295753e {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.WGS.Tbm.hg38 C3L-01205 AML WGS tumor_bone_marrow CPT0166060002 f37cc409-ca73-4af1-8375-8d7be570de2f_wgs_gdc_realn.bam 97996923897 BAM harmonized CPTAC3 fadcb315-1cbc-498d-8835-f6828b2d3ee0 c0950e4510645a11bcbfec79e8655fd4 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.WXS.Nbc C3L-01205 AML WXS buccal_normal CPT0166100002 CPT0166100002.WholeExome.RP-1303.bam 18171519238 BAM aligned CPTAC3 c3a211c4-2ffb-40ca-8221-346d345701cb a9fb104306c3e019d2003a97777a2368 {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01205.WXS.Nbc.hg38 C3L-01205 AML WXS buccal_normal CPT0166100002 63ed98ef-951d-4914-b17f-d6728cb962f3_wxs_gdc_realn.bam 24951502465 BAM harmonized CPTAC3 671e95de-5f1a-4e05-8d45-2a0a3c129ea4 c13c8e6419a5f8117728a420dea928cc {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01205.WXS.Tbm C3L-01205 AML WXS tumor_bone_marrow CPT0166060002 CPT0166060002.WholeExome.RP-1303.bam 23320952086 BAM aligned CPTAC3 59d47ce1-0a9f-400b-b735-8143a3689514 69956ed1007ac496cb16933817267c57 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01205.WXS.Tbm.hg38 C3L-01205 AML WXS tumor_bone_marrow CPT0166060002 f37cc409-ca73-4af1-8375-8d7be570de2f_wxs_gdc_realn.bam 33074466692 BAM harmonized CPTAC3 12cc671b-78a3-445f-835a-33611c8cd599 43861c3469f509b239078e54e020f9b2 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.MethArray.Green.Tbm C3L-01210 AML Methylation_Array tumor_bone_marrow CPT0166140002 203561450106_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 95481890-32e0-4bc9-b89a-954c0742b7fb 96a0fb499e8fe71f7e1a879676f5fafb {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.MethArray.Red.Tbm C3L-01210 AML Methylation_Array tumor_bone_marrow CPT0166140002 203561450106_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 47bb6375-8859-4fab-b190-62737a6bf05c b7863d9d3a9c05a8691c4e816aa48acd {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.miRNA-Seq.S22_L001_R1.Tbm C3L-01210 AML miRNA-Seq tumor_bone_marrow CPT0166150002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L001_R1_001.unaln.bam 192662894 BAM S22_L001_R1 unaligned CPTAC3 de24c088-fdd7-4713-99a7-63cfe077d51e 6116c5d190917008c67a6961820419a1 {"aliquot_tag": "ALQ_47b14aca", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.miRNA-Seq.Tbm.hg38 C3L-01210 AML miRNA-Seq tumor_bone_marrow CPT0166150002 cd251c3c-9410-471b-a3fe-d52bba236230_mirnaseq_gdc_realn.bam 214569311 BAM harmonized CPTAC3 ce541b35-86af-467f-9d50-bbf0d5276ebd 5f975b0c449b0287826db3f98b0af0ae {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.RNA-Seq.chimeric.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.chimeric.gdc_realn.bam 26113404 BAM chimeric harmonized CPTAC3 a88f9953-f024-4fdb-a677-1df1ec4f353c 97ddce89bd1f6f781ae34256a2b74c31 {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.RNA-Seq.genomic.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.genomic.gdc_realn.bam 6664865158 BAM genomic harmonized CPTAC3 18a2cc49-e01f-46dc-81ae-84d7b780c122 e25b5c6d4d5c997ba26944ef1236e878 {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.RNA-Seq.S40_L007_R1.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R1_001.fastq.gz 3096308737 FASTQ S40_L007_R1 unaligned CPTAC3 ee4ac6f0-8979-4910-89d3-2ce3de279076 bf329ee1ac4dc3d56d30ee1020274794 {"aliquot_tag": "ALQ_47b14aca", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.RNA-Seq.S40_L007_R2.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R2_001.fastq.gz 3567220988 FASTQ S40_L007_R2 unaligned CPTAC3 23dd19d7-e29c-458d-b8fb-fc639375381d 28fe84bb1afedb1313b5611cb734f29c {"aliquot_tag": "ALQ_47b14aca", "sample": "S40", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.RNA-Seq.transcriptome.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.transcriptome.gdc_realn.bam 8462795790 BAM transcriptome harmonized CPTAC3 a78e6e64-5256-4509-a4bd-cd0937f33733 c79a0968ef0640e4fac77ef664660e24 {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.WGS.Nbc C3L-01210 AML WGS buccal_normal CPT0166180003 CPT0166180003.WholeGenome.RP-1303.bam 95970148092 BAM aligned CPTAC3 0584d4d3-1164-4b64-80ca-86ebc698e668 a6b7cc95a4aba6a9d0bb0b4e36a50268 {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01210.WGS.Nbc.hg38 C3L-01210 AML WGS buccal_normal CPT0166180003 d211af53-0fe2-4296-986b-b469767aa8d4_wgs_gdc_realn.bam 147740708513 BAM harmonized CPTAC3 158d759d-6b3c-4dc3-a3d7-59930a885d0a 60b8162c037ac9d4746ea4f1ee525beb {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01210.WGS.Tbm C3L-01210 AML WGS tumor_bone_marrow CPT0166140002 CPT0166140002.WholeGenome.RP-1303.bam 71802167729 BAM aligned CPTAC3 3f642c86-8145-4b69-bec5-a1a769cfd6f9 0891f7206b110fca79fa206926d4e7bc {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.WGS.Tbm.hg38 C3L-01210 AML WGS tumor_bone_marrow CPT0166140002 a4379688-5a88-45a9-9856-d9a9bd56a53c_wgs_gdc_realn.bam 106084112316 BAM harmonized CPTAC3 3a8f7279-b2aa-4861-b5b2-6e49b38b6d78 ba6eb74ae373291d90b9b8a064598b03 {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.WXS.Nbc C3L-01210 AML WXS buccal_normal CPT0166180003 CPT0166180003.WholeExome.RP-1303.bam 27606034233 BAM aligned CPTAC3 17af10d2-35c1-43c7-a083-fd299f92e983 f2722e810ce00e10e78f3a13b6a7200e {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01210.WXS.Nbc.hg38 C3L-01210 AML WXS buccal_normal CPT0166180003 d211af53-0fe2-4296-986b-b469767aa8d4_wxs_gdc_realn.bam 38260840505 BAM harmonized CPTAC3 f122fdef-99c4-4d86-be9f-080233cf4113 bdc55a1ac16faeb3d85e483c53fef865 {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01210.WXS.Tbm C3L-01210 AML WXS tumor_bone_marrow CPT0166140002 CPT0166140002.WholeExome.RP-1303.bam 26883020796 BAM aligned CPTAC3 ea63cd67-5d17-403a-8a05-c7989ee996a9 d9bd33c9163f1cd8853c6338c5579059 {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01210.WXS.Tbm.hg38 C3L-01210 AML WXS tumor_bone_marrow CPT0166140002 a4379688-5a88-45a9-9856-d9a9bd56a53c_wxs_gdc_realn.bam 37173298863 BAM harmonized CPTAC3 b71ffbe9-4c35-49bc-958d-406ec97bfb7b 3ce4897e40274774e458bce454b08905 {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01232.MethArray.Green.T C3L-01232 GBM Methylation_Array tumor CPT0239440006 204367490030_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 21235a2e-482a-4aad-abef-4875ab0ca191 bc96f40fefaa93539852a72d63cfd997 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor"} -C3L-01232.MethArray.Red.T C3L-01232 GBM Methylation_Array tumor CPT0239440006 204367490030_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 a2af8f4d-3709-46c3-819d-fc09ea4efe0e 167140dd9bd8138c41efe1144811f91f {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor"} -C3L-01232.miRNA-Seq.S18_L001_R1.T C3L-01232 GBM miRNA-Seq tumor CPT0239440013 200526_UNC32-K00270_0248_BHH7WFBBXY_TCATTC_S18_L001_R1_001.unaln.bam 221470799 BAM S18_L001_R1 unaligned CPTAC3 b69ad4d2-7b40-4777-8d11-b5aa1a525c36 6d53a2b2d6a7c1f97432fc15d6f1437d {"aliquot_tag": "ALQ_c325b156", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01232.miRNA-Seq.S21_L001_R1.T C3L-01232 GBM miRNA-Seq tumor CPT0239440013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCATTC_S21_L001_R1_001.unaln.bam 178837862 BAM S21_L001_R1 unaligned CPTAC3 8bd3ce56-9e85-4c4c-a91c-d38d324cdcdc 8fcb897efbc5f2b729c1ba23854bdeef {"aliquot_tag": "ALQ_c325b156", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01232.miRNA-Seq.T.hg38 C3L-01232 GBM miRNA-Seq tumor CPT0239440013 d7d2ec7d-2dd5-4495-a268-59b938e3b56a_mirnaseq_gdc_realn.bam 448941138 BAM harmonized CPTAC3 44b43e7e-3843-4584-9693-3992f1243359 404f58d97dd3fc86c55bebc9538d1c9a {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor"} -C3L-01232.RNA-Seq.chimeric.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.chimeric.gdc_realn.bam 25146666 BAM chimeric harmonized CPTAC3 e14a8f1b-705a-4e70-a4c0-e7b1e071e3ae 3566bac8655a02ec6107fee365f5ec75 {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor"} -C3L-01232.RNA-Seq.genomic.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.genomic.gdc_realn.bam 7910483374 BAM genomic harmonized CPTAC3 e41c6d41-29dc-478d-b421-d6e3cbe45ab9 cdc55996c4547a7a6823d69cee1f2242 {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor"} -C3L-01232.RNA-Seq.S16_L005_R1.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R1_001.fastq.gz 3741665722 FASTQ S16_L005_R1 unaligned CPTAC3 1b412bf7-dfe6-46ce-8351-540dfc2698d5 ca430e7624c7f4e9558a2dfedf55dc57 {"aliquot_tag": "ALQ_c325b156", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01232.RNA-Seq.S16_L005_R2.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ S16_L005_R2 unaligned CPTAC3 64276f84-695c-4a6a-bde8-0b0378f17656 1d8674b8ac8a9674ea77abd5d143bf6a {"aliquot_tag": "ALQ_c325b156", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01232.RNA-Seq.transcriptome.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.transcriptome.gdc_realn.bam 9488608876 BAM transcriptome harmonized CPTAC3 0fd36f42-f9b2-4db8-8a91-1f5a8fe88e90 ce7b4c7693637e6e23dd0998cc9b5afe {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor"} -C3L-01232.WGS.N C3L-01232 GBM WGS blood_normal CPT0240430002 CPT0240430002.WholeGenome.RP-2158.bam 23484726875 BAM aligned CPTAC3 c3630728-631d-4c32-b3b8-4d764a9edc96 0501a0a077c2879fc992c60b8710eed5 {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01232.WGS.N.hg38 C3L-01232 GBM WGS blood_normal CPT0240430002 54352f31-de32-4a52-b0c0-1ab882496fc3_wgs_gdc_realn.bam 67565943172 BAM harmonized CPTAC3 c7777e0c-2447-4d47-aa47-e65bed9a8e47 9d4d7f696d14065132ceb994591df7fd {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01232.WGS.T C3L-01232 GBM WGS tumor CPT0239440006 CPT0239440006.WholeGenome.RP-2158.bam 25689260792 BAM aligned CPTAC3 62c0cb54-b429-4b6d-b1ef-4f0217a50eb0 6a8016adbd37a06820918b2e009b4f90 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor"} -C3L-01232.WGS.T.hg38 C3L-01232 GBM WGS tumor CPT0239440006 218349a8-16e2-4bcd-9c9a-690bc5152441_wgs_gdc_realn.bam 74541963072 BAM harmonized CPTAC3 7794e4ec-ebc2-40ca-9e51-a0a869ecc2be b6472a153f6389f17d1ac7d25bccdc55 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor"} -C3L-01232.WXS.N C3L-01232 GBM WXS blood_normal CPT0240430002 CPT0240430002.WholeExome.RP-1303.bam 32725473162 BAM aligned CPTAC3 543de157-2e71-4709-9fec-91f43bd4cc9e 71a55f8a3369b9970eb081f7274bb241 {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01232.WXS.N.hg38 C3L-01232 GBM WXS blood_normal CPT0240430002 54352f31-de32-4a52-b0c0-1ab882496fc3_wxs_gdc_realn.bam 45532138913 BAM harmonized CPTAC3 a65f1db8-170a-4ec2-a20b-e6deff964e2c b8c4d39e8261cbad80d47d1f3dbbc852 {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01232.WXS.T C3L-01232 GBM WXS tumor CPT0239440006 CPT0239440006.WholeExome.RP-1303.bam 22882723649 BAM aligned CPTAC3 9983b071-cda4-4712-8dea-9f1a086c30a4 0f1f807ba4ae153aa8cd98468094ccbe {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor"} -C3L-01232.WXS.T.hg38 C3L-01232 GBM WXS tumor CPT0239440006 218349a8-16e2-4bcd-9c9a-690bc5152441_wxs_gdc_realn.bam 32795800931 BAM harmonized CPTAC3 6da28b7b-b148-4c49-97ee-d4587b058a46 66477eb21c6097aa8f16370738fcd0b0 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor"} -C3L-01237.MethArray.Green.A C3L-01237 HNSCC Methylation_Array tissue_normal CPT0199830006 203273200155_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7d9b376f-b14f-44de-8271-d469b55c8890 2590cafad4b7bcd5bb276191be239ec0 {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.MethArray.Green.T C3L-01237 HNSCC Methylation_Array tumor CPT0199820006 203219640047_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2e856fcc-39d2-490e-803d-75e0170e82e7 47c8d102baa488dc3c20af6e97c84527 {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor"} -C3L-01237.MethArray.Red.A C3L-01237 HNSCC Methylation_Array tissue_normal CPT0199830006 203273200155_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 4ce881d0-0896-49f4-817e-3cd737ebc658 a9ce64c35bc0c529568596dc97d00f6c {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.MethArray.Red.T C3L-01237 HNSCC Methylation_Array tumor CPT0199820006 203219640047_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 a1f0a4a6-324c-44ba-93c7-2d8a64b077d4 293a286fe7e62785e5066136a4ef38af {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor"} -C3L-01237.miRNA-Seq.A.hg38 C3L-01237 HNSCC miRNA-Seq tissue_normal CPT0199830009 32d13737-7523-4c63-bd82-b0e452aa1628_mirnaseq_gdc_realn.bam 305240772 BAM harmonized CPTAC3 e16723f4-70b7-4404-a53a-de99b83c01db d68c72d69e40a59fb56f49908ad8022d {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.miRNA-Seq.S14_L003_R1.A C3L-01237 HNSCC miRNA-Seq tissue_normal CPT0199830009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L003_R1_001.unaln.bam 273200637 BAM S14_L003_R1 unaligned CPTAC3 13c87f64-17e5-4f68-b046-7178eac7b35c 7aa425985525df7fbe2d8135e2d7c14f {"aliquot_tag": "ALQ_5744556f", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.miRNA-Seq.S5_L003_R1.T C3L-01237 HNSCC miRNA-Seq tumor CPT0199820009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L003_R1_001.unaln.bam 193206492 BAM S5_L003_R1 unaligned CPTAC3 16035066-497b-46f1-94ed-2a761311c475 eb5dd7da644857b8823334b80ad26f26 {"aliquot_tag": "ALQ_6a247cdf", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01237.miRNA-Seq.T.hg38 C3L-01237 HNSCC miRNA-Seq tumor CPT0199820009 eac8c70e-50cf-4c55-84da-0b782bb9d4b9_mirnaseq_gdc_realn.bam 212777769 BAM harmonized CPTAC3 a0451139-539c-4c25-a84a-fdcbeb2aeb47 5490fdea59b3bad28ad91b989cef5f83 {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.chimeric.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.chimeric.gdc_realn.bam 175136593 BAM chimeric harmonized CPTAC3 e1f68fc9-ac06-41b8-830b-6a6a1f1fc57f b8166404a55dc1c2a3c8b6a3f973bea9 {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.RNA-Seq.chimeric.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.chimeric.gdc_realn.bam 312811256 BAM chimeric harmonized CPTAC3 f474f41d-cc65-46da-b2c6-c5bc3e9fcca2 34f94dfc013bb0c4656cd0f95e6f246f {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.chimeric.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.chimeric.gdc_realn.bam 197864069 BAM chimeric harmonized CPTAC3 194e33b5-2d21-48e0-9611-f9c412df4047 f196e63030557521a4fe6c5ee1bb18ac {"aliquot_tag": "ALQ_f2a4300c", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.genomic.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.genomic.gdc_realn.bam 7925658616 BAM genomic harmonized CPTAC3 593e9aa8-e42a-4cca-a447-fddeb351d809 cec675ee5d95f1bccfaa60558efba72e {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.RNA-Seq.genomic.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.genomic.gdc_realn.bam 7458178489 BAM genomic harmonized CPTAC3 e7d4b40f-3c5a-4c61-a5e2-05e56ff8387a 6ce3fd60140a68c7d382bd3ed67cd9b0 {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.genomic.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.genomic.gdc_realn.bam 10169150739 BAM genomic harmonized CPTAC3 9cbede46-1a61-4938-ba77-27a07dd51f80 c352ef3421557838cad300e8985fa12b {"aliquot_tag": "ALQ_f2a4300c", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.S1_L001_R1.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R1_001.fastq.gz 3478633298 FASTQ S1_L001_R1 unaligned CPTAC3 752226f3-1c80-431f-b226-0255a510059c 73986fcf62470ac6f72f0a2b8d037398 {"aliquot_tag": "ALQ_6a247cdf", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.S1_L001_R2.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R2_001.fastq.gz 3961895738 FASTQ S1_L001_R2 unaligned CPTAC3 a071a665-427a-42db-9a57-085a46c8ff32 2ac2c2cd39b6d8c2a77e2d998899fc30 {"aliquot_tag": "ALQ_6a247cdf", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.S23_L006_R1.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R1_001.fastq.gz 3867848237 FASTQ S23_L006_R1 unaligned CPTAC3 ba80215c-4900-4015-9279-3f316050e22e 0ca0d04a04a479b71dea4f8d835d3401 {"aliquot_tag": "ALQ_5744556f", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.RNA-Seq.S23_L006_R2.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R2_001.fastq.gz 4208634306 FASTQ S23_L006_R2 unaligned CPTAC3 ed2d3b8d-4c33-4ae2-8372-37435993da2c ee1c651d045e92af7384f69897af498e {"aliquot_tag": "ALQ_5744556f", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.RNA-Seq.S69_R1.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R1_001.fastq.gz 6419510492 FASTQ S69_R1 unaligned CPTAC3 5ea19e8e-ebfc-490f-beac-c742feca0bfc 439bfc1b0885f432e985a29bda7034b3 {"aliquot_tag": "ALQ_f2a4300c", "sample": "S69", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.S69_R2.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R2_001.fastq.gz 6672477808 FASTQ S69_R2 unaligned CPTAC3 246ab387-5a7d-4d72-83f5-537cf75f7b7a 517a0c5ce253b7544be9fd489c9f5b1f {"aliquot_tag": "ALQ_f2a4300c", "sample": "S69", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.transcriptome.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.transcriptome.gdc_realn.bam 11581709075 BAM transcriptome harmonized CPTAC3 239a5ecd-0799-4b3d-9a84-5c2fa95f37e9 082af2ffd7fd53ac46320f10e147eaa3 {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.RNA-Seq.transcriptome.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.transcriptome.gdc_realn.bam 9541506776 BAM transcriptome harmonized CPTAC3 bf5d4594-5826-43d0-8b7d-f8bfaa8f224f 39f3d83aa92bb1c65782ac5e6c6d6628 {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor"} -C3L-01237.RNA-Seq.transcriptome.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.transcriptome.gdc_realn.bam 6774165353 BAM transcriptome harmonized CPTAC3 cc499595-87f2-41ae-ac0f-6ab1e6f8a2f0 90a76829a3615aba21250843341abc5c {"aliquot_tag": "ALQ_f2a4300c", "gdc_sample_type": "Primary Tumor"} -C3L-01237.WGS.N C3L-01237 HNSCC WGS blood_normal CPT0200410002 CPT0200410002.WholeGenome.RP-1303.bam 60530526355 BAM aligned CPTAC3 286fbb40-44ae-4b3f-8c20-baa1d9f3163d c754682142c9d7fb9dc3c30814bd45bb {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01237.WGS.N.hg38 C3L-01237 HNSCC WGS blood_normal CPT0200410002 ca8c763c-557a-4aa1-a964-de58741b0d53_wgs_gdc_realn.bam 91797654199 BAM harmonized CPTAC3 41d7d80d-8a51-4bd3-a74d-774a81f7d260 d78e4289662a66c0381a80b8256d2f15 {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01237.WGS.T C3L-01237 HNSCC WGS tumor CPT0199820006 CPT0199820006.WholeGenome.RP-1303.bam 72153751219 BAM aligned CPTAC3 d84bf169-4d32-430a-b32f-eae75dd09cf4 1bc27cccbbe013671cdc43ef95baf234 {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor"} -C3L-01237.WGS.T.hg38 C3L-01237 HNSCC WGS tumor CPT0199820006 7d484ca5-118e-4823-ab4e-255cac947459_wgs_gdc_realn.bam 109069239559 BAM harmonized CPTAC3 4ac05268-23c5-4dd9-933f-37598dccc518 fb62334c01af9bbc1df893a60fcebeac {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor"} -C3L-01237.WXS.A C3L-01237 HNSCC WXS tissue_normal CPT0199830006 CPT0199830006.WholeExome.RP-1303.bam 22954644192 BAM aligned CPTAC3 ba6b86c7-64d5-49c1-872a-934fd017862d f38bc4da9892cb4281ba169496f84bd1 {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.WXS.A.hg38 C3L-01237 HNSCC WXS tissue_normal CPT0199830006 ee7007f9-8e79-404b-837c-8add77c85a5a_wxs_gdc_realn.bam 31618396714 BAM harmonized CPTAC3 e9ae0d04-d833-4d6e-b9c5-835d4390d21a 9865a7d101d396ea785e1ce7719722cb {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01237.WXS.N C3L-01237 HNSCC WXS blood_normal CPT0200410002 CPT0200410002.WholeExome.RP-1303.bam 34327237279 BAM aligned CPTAC3 744ae575-e04a-405a-aa5b-2955b17279fe d22830bcf064dd955f53e76ab21b62d6 {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01237.WXS.N.hg38 C3L-01237 HNSCC WXS blood_normal CPT0200410002 ca8c763c-557a-4aa1-a964-de58741b0d53_wxs_gdc_realn.bam 46705377151 BAM harmonized CPTAC3 40c6aa8c-c701-4687-af81-78a019003241 ffbeb39594fee8266d97216c0cc90d56 {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01237.WXS.T C3L-01237 HNSCC WXS tumor CPT0199820006 CPT0199820006.WholeExome.RP-1303.bam 27401634894 BAM aligned CPTAC3 d5e88461-e9b8-451b-a5ea-b875ced114db 8e431350f8248595766621e947c63355 {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor"} -C3L-01237.WXS.T.hg38 C3L-01237 HNSCC WXS tumor CPT0199820006 7d484ca5-118e-4823-ab4e-255cac947459_wxs_gdc_realn.bam 38025603063 BAM harmonized CPTAC3 81f3c16c-d03f-440d-9785-1f8b052761a7 ba3176f6782723454240a78409cb5d9e {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor"} -C3L-01246.MethArray.Green.T C3L-01246 UCEC Methylation_Array tumor CPT0080980009 202176300111_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 90413679-a332-4fb0-8f65-c13ff2bffa89 fcd636d5c4aaba50a69b6ecdde4cb89f {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor"} -C3L-01246.MethArray.Red.T C3L-01246 UCEC Methylation_Array tumor CPT0080980009 202176300111_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 8c35ae7b-2ce1-4db5-b51c-1a280a017120 2ab8a2338f06f4ecea3ce37a6ea64c9d {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor"} -C3L-01246.miRNA-Seq.S34_L004_R1.T C3L-01246 UCEC miRNA-Seq tumor CPT0080980006 181113_UNC31-K00269_0164_AH23NNBBXY_TAGCTT_S34_L004_R1_001.unaln.bam 319432738 BAM S34_L004_R1 unaligned CPTAC3 f2788ac3-b71d-4165-beb8-2a9c6c38d27b 5bb15590615ad0c13010709110bfd648 {"aliquot_tag": "ALQ_353efb44", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01246.miRNA-Seq.T.hg38 C3L-01246 UCEC miRNA-Seq tumor CPT0080980006 ae6e918a-4d40-4f1b-b20e-01979b47a301_mirnaseq_gdc_realn.bam 355271067 BAM harmonized CPTAC3 bcc59900-98ac-48d6-b8d8-3a7a1f93406e a691160698e59645476c37a0e03231e4 {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.chimeric.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.chimeric.gdc_realn.bam 253405436 BAM chimeric harmonized CPTAC3 01341863-e08b-48af-9a19-08724dbabcac 4614d408a0bab49dcf713a653a1a4723 {"aliquot_tag": "ALQ_1307149f", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.chimeric.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.chimeric.gdc_realn.bam 59133488 BAM chimeric harmonized CPTAC3 0fe31849-e387-4e8a-adfc-0a8b042d3af4 f2a52af636ddb0f5b00a8a966e978aa3 {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.genomic.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.genomic.gdc_realn.bam 10593869149 BAM genomic harmonized CPTAC3 315374fa-c01d-4eb1-9cc9-dca18969c40a 4ecbc3dbb98388928f66596db636b342 {"aliquot_tag": "ALQ_1307149f", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.genomic.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.genomic.gdc_realn.bam 9778289174 BAM genomic harmonized CPTAC3 98adea27-0226-4877-b5dc-36bb65ee6101 a7fb33e8c7d0182f2338517b90420cce {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.S10_R1.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R1_001.fastq.gz 6159434659 FASTQ S10_R1 unaligned CPTAC3 8e4de314-c539-430b-8db6-0b930a1da13a 5bc646ffdaa34ad7d30a0995a9ff9c0a {"aliquot_tag": "ALQ_1307149f", "sample": "S10", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.S10_R2.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R2_001.fastq.gz 6427382071 FASTQ S10_R2 unaligned CPTAC3 9a421c93-4a5c-4612-835d-0eeffcbb0097 223f71f9ee30cd33215a0e8939db2e40 {"aliquot_tag": "ALQ_1307149f", "sample": "S10", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.S20_L005_R1.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4167982014 FASTQ S20_L005_R1 unaligned CPTAC3 150efab8-0b73-4f1e-be49-e317b0d739ee a90d25cadf0d348bf0564667cda252d5 {"aliquot_tag": "ALQ_353efb44", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.S20_L005_R2.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4523805912 FASTQ S20_L005_R2 unaligned CPTAC3 f5b7c2a1-9ed4-451e-880b-9ad37fda8ddb 57c86be853c9aae1c8023a7c4916b63b {"aliquot_tag": "ALQ_353efb44", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.transcriptome.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.transcriptome.gdc_realn.bam 7451176205 BAM transcriptome harmonized CPTAC3 27cb0e05-5942-46f4-a4ea-484c8616f032 fe18b5ca4dce68781a83e95ccf70c508 {"aliquot_tag": "ALQ_1307149f", "gdc_sample_type": "Primary Tumor"} -C3L-01246.RNA-Seq.transcriptome.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.transcriptome.gdc_realn.bam 10935857645 BAM transcriptome harmonized CPTAC3 24d2ddaa-4d05-4658-b4da-d6d6c04e6352 a1e89d851b8e94eb22919a99ab6a1faf {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor"} -C3L-01246.WGS.N C3L-01246 UCEC WGS blood_normal CPT0081030002 CPT0081030002.WholeGenome.RP-1303.bam 64234276853 BAM aligned CPTAC3 cdcde9e9-8922-4b0e-b36b-9d445b4b67cd a7d34f0dfc3a824e9a8c7941be50b080 {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal"} -C3L-01246.WGS.N.hg38 C3L-01246 UCEC WGS blood_normal CPT0081030002 69f5bb55-732f-438f-bd16-8a465e97d464_gdc_realn.bam 96605874864 BAM harmonized CPTAC3 2dac5fa1-c56c-4425-ba61-8270014816ca 4115a8d017852db6a1438074e2956768 {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal"} -C3L-01246.WGS.T C3L-01246 UCEC WGS tumor CPT0080980009 CPT0080980009.WholeGenome.RP-1303.bam 65828333887 BAM aligned CPTAC3 d62d5f7b-2d0e-4b5c-858b-cc973789062b 14aaeda6236ecaf2bfa9d45fb44f5b0f {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor"} -C3L-01246.WGS.T.hg38 C3L-01246 UCEC WGS tumor CPT0080980009 a1aa4887-909b-4409-a7cb-96399f56632b_gdc_realn.bam 99712788526 BAM harmonized CPTAC3 989fb585-18b1-4e94-8d2d-48cc86534d73 492ac628a0419a16bdccd60a9ee4278f {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor"} -C3L-01246.WXS.N C3L-01246 UCEC WXS blood_normal CPT0081030002 CPT0081030002.WholeExome.RP-1303.bam 34668655549 BAM aligned CPTAC3 2b17f82f-6232-45c1-8403-dfb743b7c345 8a6b49598f8b9e28f147fdb5ce8a9c83 {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal"} -C3L-01246.WXS.N.hg38 C3L-01246 UCEC WXS blood_normal CPT0081030002 69f5bb55-732f-438f-bd16-8a465e97d464_gdc_realn.bam 47916311931 BAM harmonized CPTAC3 e51f6394-96cc-4d48-954b-a578ccea4a6b 73fb34950a83aff4322f4325fd2e146f {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal"} -C3L-01246.WXS.T C3L-01246 UCEC WXS tumor CPT0080980009 CPT0080980009.WholeExome.RP-1303.bam 29063882736 BAM aligned CPTAC3 266bc8ac-06f0-4e08-a183-b089bc18a036 d61d4fd275706ac8f660c20fd5c12ea0 {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor"} -C3L-01246.WXS.T.hg38 C3L-01246 UCEC WXS tumor CPT0080980009 a1aa4887-909b-4409-a7cb-96399f56632b_gdc_realn.bam 40532055118 BAM harmonized CPTAC3 67ae0bf3-c217-40d2-9e0f-031c88d3d165 3d18ee08997e2c7b599225d7eb10bb66 {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor"} -C3L-01247.MethArray.Green.T C3L-01247 UCEC Methylation_Array tumor CPT0080700009 202163530120_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3879c664-2197-427f-a8a5-7676963cf63d f3fd0f1f542d73c762ae487f1a34425d {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor"} -C3L-01247.MethArray.Red.T C3L-01247 UCEC Methylation_Array tumor CPT0080700009 202163530120_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5dfec6de-ac1b-4c6b-91a4-2f01c18e7703 5dd2bec20feb3ca9bdbfcee9246dab2d {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor"} -C3L-01247.miRNA-Seq.S10_L001_R1.T C3L-01247 UCEC miRNA-Seq tumor CPT0080700006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L001_R1_001.unaln.bam 330031240 BAM S10_L001_R1 unaligned CPTAC3 3112196e-5604-4c28-b3f1-861cd110a85c c0d7079a977c1297bb6bcf69f2adbd11 {"aliquot_tag": "ALQ_3f44d1f5", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01247.miRNA-Seq.T.hg38 C3L-01247 UCEC miRNA-Seq tumor CPT0080700006 a025ecc5-b0de-4d11-b983-72db1443df67_mirnaseq_gdc_realn.bam 376859508 BAM harmonized CPTAC3 b7ff4e1c-7ef1-4b8e-b2b2-ad311d5ecd46 9631344185d37ac5bf3458a7ebf9a34f {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor"} -C3L-01247.RNA-Seq.chimeric.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.chimeric.gdc_realn.bam 73723520 BAM chimeric harmonized CPTAC3 daa49622-d7cb-4fcf-a3ee-b325ce3008a6 faea94bfbe9c2a08f465a7e1edffd4b3 {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor"} -C3L-01247.RNA-Seq.genomic.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.genomic.gdc_realn.bam 10011589989 BAM genomic harmonized CPTAC3 42f3d3e5-ffec-4314-a9b6-4d09df5d17e5 c82664543be70869ceec11999a367d25 {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor"} -C3L-01247.RNA-Seq.S18_L005_R1.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4439511718 FASTQ S18_L005_R1 unaligned CPTAC3 20f8e780-92e0-43e6-b7a4-6e84f39235c8 00dff419075951f9894a19708c4a94bd {"aliquot_tag": "ALQ_3f44d1f5", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01247.RNA-Seq.S18_L005_R2.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4823429751 FASTQ S18_L005_R2 unaligned CPTAC3 340e18d4-ab3f-4a19-8efa-19a46955ea2f 56e8d20e4f9af8cc49dc39f53d26c6b2 {"aliquot_tag": "ALQ_3f44d1f5", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01247.RNA-Seq.transcriptome.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.transcriptome.gdc_realn.bam 10926972606 BAM transcriptome harmonized CPTAC3 07729ccc-3096-498b-8b2c-f019df1a56a6 218bae9b316a8b3f0ab19761a3bd8635 {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor"} -C3L-01247.WGS.N C3L-01247 UCEC WGS blood_normal CPT0080800002 CPT0080800002.WholeGenome.RP-1303.bam 67754672037 BAM aligned CPTAC3 bad4aa98-ea70-474a-988b-da532dc8b98b 6a0443389c9b8c5e858e86376cc733bf {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal"} -C3L-01247.WGS.N.hg38 C3L-01247 UCEC WGS blood_normal CPT0080800002 75350a75-f96e-4de2-a8df-44298992a35d_gdc_realn.bam 103329625643 BAM harmonized CPTAC3 9a71ebf5-d978-4980-8894-e3b597321b3f 88bb68283cc9bab95a50cceacdc8eeac {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal"} -C3L-01247.WGS.T C3L-01247 UCEC WGS tumor CPT0080700009 CPT0080700009.WholeGenome.RP-1303.bam 62033902946 BAM aligned CPTAC3 6a24e69e-ff0b-4265-8721-cf3e574cd602 2fb45f62d9385dab7955f43e8a807c3b {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor"} -C3L-01247.WGS.T.hg38 C3L-01247 UCEC WGS tumor CPT0080700009 18a5e367-653a-430f-95b3-4d6b504e6c55_gdc_realn.bam 92783302296 BAM harmonized CPTAC3 f8d1546e-8793-48a7-9853-31626061778f a11e6325b28852f5e6b405ae54138457 {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor"} -C3L-01247.WXS.N C3L-01247 UCEC WXS blood_normal CPT0080800002 CPT0080800002.WholeExome.RP-1303.bam 38353017139 BAM aligned CPTAC3 042952fd-d733-4298-bd7e-804f68a03328 de85fff50f944a078cb70ae686f6f99f {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal"} -C3L-01247.WXS.N.hg38 C3L-01247 UCEC WXS blood_normal CPT0080800002 75350a75-f96e-4de2-a8df-44298992a35d_gdc_realn.bam 53013036861 BAM harmonized CPTAC3 7e9c5ca9-4e5b-475a-b3f9-beb59939743b 63e6c565f00ee2c93ae574b6691de9a5 {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal"} -C3L-01247.WXS.T C3L-01247 UCEC WXS tumor CPT0080700009 CPT0080700009.WholeExome.RP-1303.bam 28961376728 BAM aligned CPTAC3 8dea3157-8e37-4333-b9cc-6ced8fc244ec 75375a5d7763b73c83aa59b4849dbfef {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor"} -C3L-01247.WXS.T.hg38 C3L-01247 UCEC WXS tumor CPT0080700009 18a5e367-653a-430f-95b3-4d6b504e6c55_gdc_realn.bam 39899925042 BAM harmonized CPTAC3 faab2e37-4298-4c8d-9e97-f916b328eb3a 0ce56a16cee33e071bf0ef0f7089bd13 {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor"} -C3L-01248.MethArray.Green.T C3L-01248 UCEC Methylation_Array tumor CPT0080300006 202176300039_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d55dee16-fa74-4072-8277-7ca710b2636d 0f7b52a10f6e8f6f24a311b897455277 {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor"} -C3L-01248.MethArray.Red.T C3L-01248 UCEC Methylation_Array tumor CPT0080300006 202176300039_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 93e53802-e409-4f85-aa0f-f91acddefe3b 465b6ca75d1a8e2642d371e338df219f {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor"} -C3L-01248.miRNA-Seq.S12_L006_R1.T C3L-01248 UCEC miRNA-Seq tumor CPT0080300009 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L006_R1_001.unaln.bam 257802616 BAM S12_L006_R1 unaligned CPTAC3 64e6b0d9-4419-4c88-8aa9-0c3cc1a7951b d07b8326331751194c40df1bc0f15c64 {"aliquot_tag": "ALQ_346a8e72", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01248.miRNA-Seq.T.hg38 C3L-01248 UCEC miRNA-Seq tumor CPT0080300009 5019e699-3871-4164-91c8-19d0db444516_mirnaseq_gdc_realn.bam 292439770 BAM harmonized CPTAC3 148b1b55-582d-4dd2-8e74-32bde1376918 d5847959be90e291396f14cc8db58e0c {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.chimeric.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.chimeric.gdc_realn.bam 134273161 BAM chimeric harmonized CPTAC3 fb368ce1-bf7e-4c42-abd7-50402cd229d0 b247fc000c82ffa6a4ff299e78760e3b {"aliquot_tag": "ALQ_c19d9e24", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.chimeric.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.chimeric.gdc_realn.bam 37652055 BAM chimeric harmonized CPTAC3 e1ca580e-59e6-4a2f-82b5-96bf1f3249fe d6fa913b532a5d0630e15908f46d184a {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.genomic.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.genomic.gdc_realn.bam 7340244385 BAM genomic harmonized CPTAC3 b4ea4663-634d-45bf-a0e2-50b25355c922 e9724059e48a8914925a6f74e0d0a650 {"aliquot_tag": "ALQ_c19d9e24", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.genomic.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.genomic.gdc_realn.bam 9607548448 BAM genomic harmonized CPTAC3 28e3d8d7-cabd-49be-9109-a1a894916fb0 a3627405cb8e38ed509a866cbbab385f {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.S24_L006_R1.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R1_001.fastq.gz 4011901122 FASTQ S24_L006_R1 unaligned CPTAC3 f19a6801-b116-4e0d-b755-5f72f604f648 50c29a95b28c6f7462b867aa0c65af7f {"aliquot_tag": "ALQ_346a8e72", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.S24_L006_R2.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4207615645 FASTQ S24_L006_R2 unaligned CPTAC3 848dfac4-6067-4a87-8e2c-887b5e4a3272 68df1714ba940d7ddff0150fddaa71a1 {"aliquot_tag": "ALQ_346a8e72", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.S51_R1.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R1_001.fastq.gz 5200763996 FASTQ S51_R1 unaligned CPTAC3 93ce543e-b959-4850-8a56-834233adbb89 5f3374f08623680080bc752408eabd1d {"aliquot_tag": "ALQ_c19d9e24", "sample": "S51", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.S51_R2.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R2_001.fastq.gz 5328946655 FASTQ S51_R2 unaligned CPTAC3 189e1a4a-71bc-4175-9118-531dc6ceef62 294e27a543d2d4985c9aa2dcc798fe47 {"aliquot_tag": "ALQ_c19d9e24", "sample": "S51", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.transcriptome.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.transcriptome.gdc_realn.bam 5147730555 BAM transcriptome harmonized CPTAC3 2333a8df-892e-4c67-b833-f6e2da61e5dc a1d166374431af06fbaf4a5e4dda530b {"aliquot_tag": "ALQ_c19d9e24", "gdc_sample_type": "Primary Tumor"} -C3L-01248.RNA-Seq.transcriptome.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.transcriptome.gdc_realn.bam 11269096203 BAM transcriptome harmonized CPTAC3 1cd59efe-8e81-46f3-9ecd-75d7c987774b ebe55204c98120161f4d0f80e3379d30 {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor"} -C3L-01248.WGS.N C3L-01248 UCEC WGS blood_normal CPT0080340001 CPT0080340001.WholeGenome.RP-1303.bam 79987862462 BAM aligned CPTAC3 25a020c8-6c7c-482f-89ef-a5782cf926d0 332b3c2d92ff0bbb5318e7144d9feff7 {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal"} -C3L-01248.WGS.N.hg38 C3L-01248 UCEC WGS blood_normal CPT0080340001 4524e78f-96c8-41f1-a6a8-e96abbd54c27_gdc_realn.bam 119266584582 BAM harmonized CPTAC3 9aae580f-d6ae-4920-8e2f-a249be96c57f 46f69fbe05a286462854f1d532731546 {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal"} -C3L-01248.WGS.T C3L-01248 UCEC WGS tumor CPT0080300006 CPT0080300006.WholeGenome.RP-1303.bam 72735805423 BAM aligned CPTAC3 972f7751-3152-4642-9553-ec70ee3c20be 36f55e7d767aa45b07c5c411fb69788b {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor"} -C3L-01248.WGS.T.hg38 C3L-01248 UCEC WGS tumor CPT0080300006 e014ed4a-7325-4e39-b236-f63b6a17e319_gdc_realn.bam 110751611067 BAM harmonized CPTAC3 3aa26966-41cf-4ab9-9446-0e19fa01b054 62e83991fa3a7d0ab61983d5b6859e08 {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor"} -C3L-01248.WXS.N C3L-01248 UCEC WXS blood_normal CPT0080340001 CPT0080340001.WholeExome.RP-1303.bam 25984881494 BAM aligned CPTAC3 6c3c775a-35d5-4418-84c1-9e6421287e19 181ba2e9c864b4ea24a7c0475cb67f0d {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal"} -C3L-01248.WXS.N.hg38 C3L-01248 UCEC WXS blood_normal CPT0080340001 4524e78f-96c8-41f1-a6a8-e96abbd54c27_gdc_realn.bam 35106770520 BAM harmonized CPTAC3 2b85a1a0-d4be-4eb0-9424-4ad4d38c853e 95b0b35d0cf679f12a14673eba1b6418 {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal"} -C3L-01248.WXS.T C3L-01248 UCEC WXS tumor CPT0080300006 CPT0080300006.WholeExome.RP-1303.bam 33766570479 BAM aligned CPTAC3 9da0f4ae-f3e7-4e37-b1fc-b16f7b0600d7 f4915740beca0641d08465ebc598fadc {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor"} -C3L-01248.WXS.T.hg38 C3L-01248 UCEC WXS tumor CPT0080300006 e014ed4a-7325-4e39-b236-f63b6a17e319_gdc_realn.bam 45868541197 BAM harmonized CPTAC3 ec333f4b-3db0-4c11-a38f-4795b11bb47f 79b2e181d86f0e1c6081670cf6e165df {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor"} -C3L-01249.MethArray.Green.T C3L-01249 UCEC Methylation_Array tumor CPT0080880009 202176290087_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9a8c7065-b5a6-4c4a-b221-fcd0903a00c3 19497ccb50d3720e3d095ceb5ee0b840 {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor"} -C3L-01249.MethArray.Red.T C3L-01249 UCEC Methylation_Array tumor CPT0080880009 202176290087_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 959a6d62-520c-4488-bef8-04f0bc93280e 5cc68c39fc15cb574beb8742600e960d {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor"} -C3L-01249.miRNA-Seq.S14_L005_R1.T C3L-01249 UCEC miRNA-Seq tumor CPT0080880006 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L005_R1_001.unaln.bam 210911662 BAM S14_L005_R1 unaligned CPTAC3 f8c868fc-848d-4614-9c91-20bbb327e8cc b9731b2f811ea1249ed75a136799b135 {"aliquot_tag": "ALQ_fe6228e1", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01249.miRNA-Seq.T.hg38 C3L-01249 UCEC miRNA-Seq tumor CPT0080880006 89ace656-6665-44bf-8fe3-9d0e425565e5_mirnaseq_gdc_realn.bam 226570494 BAM harmonized CPTAC3 d00f1386-e3dd-4d60-97f5-5c0f8248589e 5d004562f19ea0e420fd12cbaf9b18da {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.chimeric.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.chimeric.gdc_realn.bam 178842707 BAM chimeric harmonized CPTAC3 9c1847bd-8033-4597-aaf5-a3b8e63f8f9e 1abe6286546f2fbd78ab42e26c227b69 {"aliquot_tag": "ALQ_df360323", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.chimeric.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.chimeric.gdc_realn.bam 57854177 BAM chimeric harmonized CPTAC3 3e444495-b96f-46b5-b75c-5fc26876f792 201ecccd88d33bea2d3a8016256f6a16 {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.genomic.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.genomic.gdc_realn.bam 8693213991 BAM genomic harmonized CPTAC3 ea260d31-bdec-4e72-8425-61c3f2346c6f 0b1040f7f781161d9d8a58f37110470e {"aliquot_tag": "ALQ_df360323", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.genomic.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.genomic.gdc_realn.bam 10982393783 BAM genomic harmonized CPTAC3 31927cca-d2a1-4852-a3b8-1997e191ecf3 7fdb61bf2f73957aa03e63c25baf41f8 {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.S17_L005_R1.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4071816231 FASTQ S17_L005_R1 unaligned CPTAC3 5bdc0383-216a-479a-b641-502eed2b241a 7edca60bb008ac919de7f6f6ce6be663 {"aliquot_tag": "ALQ_fe6228e1", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.S17_L005_R2.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4558825534 FASTQ S17_L005_R2 unaligned CPTAC3 1e55bad8-2e97-4693-9859-81d5834c997f a05b68dac5618c6b0d3a230d5dad71a7 {"aliquot_tag": "ALQ_fe6228e1", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.S27_R1.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R1_001.fastq.gz 5458667756 FASTQ S27_R1 unaligned CPTAC3 1d4175fb-198a-4096-bcbc-bc419aa0339a d437fa122b94283e8e210bbc0af50396 {"aliquot_tag": "ALQ_df360323", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.S27_R2.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R2_001.fastq.gz 5640350978 FASTQ S27_R2 unaligned CPTAC3 3adfd2e8-60a7-428d-9bf1-a587d087adf4 39af81948c62b326e6afaa4028703c47 {"aliquot_tag": "ALQ_df360323", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.transcriptome.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.transcriptome.gdc_realn.bam 6538790482 BAM transcriptome harmonized CPTAC3 a46ad20f-1760-4cb2-bb2d-3b50dc7b1e98 1708f0aac657f0907d5a7fa8f06eae5e {"aliquot_tag": "ALQ_df360323", "gdc_sample_type": "Primary Tumor"} -C3L-01249.RNA-Seq.transcriptome.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.transcriptome.gdc_realn.bam 9997713022 BAM transcriptome harmonized CPTAC3 aed58eb1-f945-4791-b63f-9d1cbab8c7db 48502fefdf49e239cb171c5c021db1dc {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor"} -C3L-01249.WGS.N C3L-01249 UCEC WGS blood_normal CPT0080920002 CPT0080920002.WholeGenome.RP-1303.bam 69641060479 BAM aligned CPTAC3 ad5d34b4-11e4-41b5-97c4-f55c899dd358 cb9d272e13f9a213cb313ef3f7fad48e {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01249.WGS.N.hg38 C3L-01249 UCEC WGS blood_normal CPT0080920002 a9dfb9b8-ccc8-4c7f-8658-9bc8098e270e_gdc_realn.bam 108062107807 BAM harmonized CPTAC3 04c9b457-112e-4e52-ac06-eac47fa8a994 18ba9fd14b64e9124ffa559c5652a3d8 {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01249.WGS.T C3L-01249 UCEC WGS tumor CPT0080880009 CPT0080880009.WholeGenome.RP-1303.bam 62482099576 BAM aligned CPTAC3 9c0416f0-d281-4bc0-9e88-b87665e25287 f1e1579ea4814af41cb110bf9db9ea90 {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor"} -C3L-01249.WGS.T.hg38 C3L-01249 UCEC WGS tumor CPT0080880009 03268ce1-fb36-4573-ae32-127e717098ac_gdc_realn.bam 93325953219 BAM harmonized CPTAC3 cfac3e22-503c-461b-82b7-95451aa8dcf3 97ae537a40ff3fa1f449e4f8b9cc65c5 {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor"} -C3L-01249.WXS.N C3L-01249 UCEC WXS blood_normal CPT0080920002 CPT0080920002.WholeExome.RP-1303.bam 38090435822 BAM aligned CPTAC3 33dbc85d-be68-4786-9ad8-967e528491d3 81b6f1268ba9287f7bac230201534d37 {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01249.WXS.N.hg38 C3L-01249 UCEC WXS blood_normal CPT0080920002 a9dfb9b8-ccc8-4c7f-8658-9bc8098e270e_gdc_realn.bam 52485968783 BAM harmonized CPTAC3 806818d2-ac05-4017-a2f5-56b1cd9f8c22 4a7325f7d8cc4ca8f932269f4a1733d9 {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01249.WXS.T C3L-01249 UCEC WXS tumor CPT0080880009 CPT0080880009.WholeExome.RP-1303.bam 36969305378 BAM aligned CPTAC3 c5e6c695-c1ff-48bf-af3d-18e2d48347c3 a2b2942483c7ff3a87479a6855dc5dcd {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor"} -C3L-01249.WXS.T.hg38 C3L-01249 UCEC WXS tumor CPT0080880009 03268ce1-fb36-4573-ae32-127e717098ac_gdc_realn.bam 50456795195 BAM harmonized CPTAC3 cf4aa5f9-c779-4b63-a58a-11b5bcf1365c 8bd55d6bb39854b12f409e8a43534bca {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor"} -C3L-01252.MethArray.Green.T C3L-01252 UCEC Methylation_Array tumor CPT0080610009 202184900111_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 08233026-5b15-465b-b42d-45f201da7790 700303e8a5734f2620ca6b462879f980 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor"} -C3L-01252.MethArray.Red.T C3L-01252 UCEC Methylation_Array tumor CPT0080610009 202184900111_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 10514250-40d1-483e-a501-fa4eec5399cf 7359237721159c2e14646e516e8f0a28 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor"} -C3L-01252.miRNA-Seq.S9_L001_R1.T C3L-01252 UCEC miRNA-Seq tumor CPT0080610006 181012_UNC32-K00270_0124_AH223CBBXY_CCAACA_S9_L001_R1_001.unaln.bam 251820717 BAM S9_L001_R1 unaligned CPTAC3 9a2d5576-502d-4d16-a488-c33670ed521b 0e954d6b646c35edb93b6a46ba389dae {"aliquot_tag": "ALQ_c9782be0", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01252.miRNA-Seq.T.hg38 C3L-01252 UCEC miRNA-Seq tumor CPT0080610006 f9adcd01-545e-4802-8164-4691fd1237c8_mirnaseq_gdc_realn.bam 283330891 BAM harmonized CPTAC3 20593497-5cf9-4cd0-a99d-b6a531d813f8 2eae90d921fbce9699eebac811eae602 {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.chimeric.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.chimeric.gdc_realn.bam 157905783 BAM chimeric harmonized CPTAC3 0a57b77a-1051-4da7-a6e3-b8c7211f2c41 411f44c76debb096eba4cbf949a3cae8 {"aliquot_tag": "ALQ_e1f8872c", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.chimeric.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.chimeric.gdc_realn.bam 38694690 BAM chimeric harmonized CPTAC3 50d19882-897a-4652-90a9-efa495e7b8be 80063419b46128b84b59735463571018 {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.genomic.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.genomic.gdc_realn.bam 7032996467 BAM genomic harmonized CPTAC3 312ab9c6-0597-46e7-a156-d6a0c4a5070f 08e371c9e63b9c02a2698195cf45c09e {"aliquot_tag": "ALQ_e1f8872c", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.genomic.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.genomic.gdc_realn.bam 7111648119 BAM genomic harmonized CPTAC3 f90a0c31-ab89-4454-8a94-e7ee3331fbab b20a1882b242ff51f9ce71d47064167b {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.S19_L005_R1.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3161984688 FASTQ S19_L005_R1 unaligned CPTAC3 d36d42d2-afb4-4098-bac2-2c0d503c2f67 dba1d6c262220e1371b36688618bce98 {"aliquot_tag": "ALQ_c9782be0", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.S19_L005_R2.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3432877942 FASTQ S19_L005_R2 unaligned CPTAC3 992384ee-8c0e-4c30-8732-561df93e281a 2e391643618800eccaf568786060e977 {"aliquot_tag": "ALQ_c9782be0", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.S71_R1.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R1_001.fastq.gz 3972718635 FASTQ S71_R1 unaligned CPTAC3 e78da239-1ee6-4300-b765-3645b33c77c3 4faa2ad97e139e14bf5c344555f07a32 {"aliquot_tag": "ALQ_e1f8872c", "sample": "S71", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.S71_R2.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R2_001.fastq.gz 4065574970 FASTQ S71_R2 unaligned CPTAC3 e0c4ba9d-44ae-4f26-81d3-a8b1c715fa2f 4d8183b3278042304eaf984cdb8cd0b7 {"aliquot_tag": "ALQ_e1f8872c", "sample": "S71", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.transcriptome.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.transcriptome.gdc_realn.bam 3091923725 BAM transcriptome harmonized CPTAC3 3e794f69-c637-4c3d-afdb-9c38bb7aff9c 52dd5c25794ee1dd924db3d608c15b75 {"aliquot_tag": "ALQ_e1f8872c", "gdc_sample_type": "Primary Tumor"} -C3L-01252.RNA-Seq.transcriptome.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.transcriptome.gdc_realn.bam 7475567129 BAM transcriptome harmonized CPTAC3 ab817c77-d856-4e08-9600-b429d549cdc6 0a9d7f047655c0c4b688af20ce72d1ec {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor"} -C3L-01252.WGS.N C3L-01252 UCEC WGS blood_normal CPT0080660002 CPT0080660002.WholeGenome.RP-1303.bam 63347976899 BAM aligned CPTAC3 c48c0495-bdfc-4133-9094-e61a2ad71eb2 35812c1b2e69cab30d6a7ec03381988a {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01252.WGS.N.hg38 C3L-01252 UCEC WGS blood_normal CPT0080660002 a7a105df-d4f7-4bef-87b3-01819d8bcf0b_gdc_realn.bam 94343461651 BAM harmonized CPTAC3 b738031e-17f5-4a3d-b10e-963d5cc0eab8 0d153e4b04e65d59af2be4ed86456169 {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01252.WGS.T C3L-01252 UCEC WGS tumor CPT0080610009 CPT0080610009.WholeGenome.RP-1303.bam 65191313280 BAM aligned CPTAC3 efa92c27-f019-42d8-80ff-22f192d8be50 6d1535eb454b11f01d0425097e69214d {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor"} -C3L-01252.WGS.T.hg38 C3L-01252 UCEC WGS tumor CPT0080610009 006c3a0a-73c6-45b5-9520-cffaf0a8cbff_gdc_realn.bam 98043168966 BAM harmonized CPTAC3 0a71692b-69f2-4d45-9740-59e1b1025326 188d093b870c55c186610d8d04407439 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor"} -C3L-01252.WXS.N C3L-01252 UCEC WXS blood_normal CPT0080660002 CPT0080660002.WholeExome.RP-1303.bam 31717353456 BAM aligned CPTAC3 107f1193-5129-4ebc-a826-cb3619de39b7 caa140385bccc3692f001cd8bd6ceb5a {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01252.WXS.N.hg38 C3L-01252 UCEC WXS blood_normal CPT0080660002 a7a105df-d4f7-4bef-87b3-01819d8bcf0b_gdc_realn.bam 43066284618 BAM harmonized CPTAC3 ca598d4d-9330-4293-9d63-45a5a19c02db d0d28a6e38833c82632426ddff82cd1b {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01252.WXS.T C3L-01252 UCEC WXS tumor CPT0080610009 CPT0080610009.WholeExome.RP-1303.bam 33791445822 BAM aligned CPTAC3 408d28c0-f5ef-4f57-8f2b-58203af65413 c85de98576ca33473735886a0487f5d0 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor"} -C3L-01252.WXS.T.hg38 C3L-01252 UCEC WXS tumor CPT0080610009 006c3a0a-73c6-45b5-9520-cffaf0a8cbff_gdc_realn.bam 46981368893 BAM harmonized CPTAC3 fcd8e9ca-8399-4824-9e79-e6c582f7dc53 c85f2035976259f364e443eebb523e59 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor"} -C3L-01253.MethArray.Green.T C3L-01253 UCEC Methylation_Array tumor CPT0080400009 202176290046_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 30a1bb1b-911d-4372-a0d1-83f57fc80d43 58a7383e89fdf76b094c652538c6ebad {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor"} -C3L-01253.MethArray.Red.T C3L-01253 UCEC Methylation_Array tumor CPT0080400009 202176290046_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a3195d6e-24cc-4fce-a714-b51ea3ac7235 6277f91b12fca4bd44823c06e65c906d {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor"} -C3L-01253.miRNA-Seq.S8_L001_R1.T C3L-01253 UCEC miRNA-Seq tumor CPT0080400006 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L001_R1_001.unaln.bam 521394542 BAM S8_L001_R1 unaligned CPTAC3 a01f2e15-a2e2-43a0-a1f9-1c6ea955ceb4 3d449ba9814bcc2cb19b9920ef0066a4 {"aliquot_tag": "ALQ_b9d0a35b", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01253.miRNA-Seq.T.hg38 C3L-01253 UCEC miRNA-Seq tumor CPT0080400006 16a16f75-33a5-4160-9435-92686a4dc20d_mirnaseq_gdc_realn.bam 606421909 BAM harmonized CPTAC3 5d696a15-b436-4a0f-8be4-8e0feba3f69e e6281ea1548657cec57423a7f3204f3e {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor"} -C3L-01253.RNA-Seq.chimeric.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.chimeric.gdc_realn.bam 52348636 BAM chimeric harmonized CPTAC3 f85dd2ee-2fd8-4e0f-ae74-6b6e0161d9d4 8dbbe5e3c7afff9996de6113c0bcf515 {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor"} -C3L-01253.RNA-Seq.genomic.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.genomic.gdc_realn.bam 8544852998 BAM genomic harmonized CPTAC3 9a8e751d-8788-4764-bbd9-adc0952709d4 4099ba7972aad850851eabd0536687ea {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor"} -C3L-01253.RNA-Seq.S24_L006_R1.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3839033718 FASTQ S24_L006_R1 unaligned CPTAC3 947060cd-6c80-47b7-8330-3b0d802d9d50 bbc181db753aeea14e4faa9662211276 {"aliquot_tag": "ALQ_b9d0a35b", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01253.RNA-Seq.S24_L006_R2.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4206420875 FASTQ S24_L006_R2 unaligned CPTAC3 430e7fee-c564-4b6d-9c18-3249e79c57d1 ed47e1d2b44c6f028bb619bb1a4dffc5 {"aliquot_tag": "ALQ_b9d0a35b", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01253.RNA-Seq.transcriptome.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.transcriptome.gdc_realn.bam 9606319162 BAM transcriptome harmonized CPTAC3 e206cca9-3ff7-4d3d-a21d-a31d8a92c251 8fed546c5f20713295b0641a03701b6b {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor"} -C3L-01253.WGS.N C3L-01253 UCEC WGS blood_normal CPT0080440002 CPT0080440002.WholeGenome.RP-1303.bam 82233081012 BAM aligned CPTAC3 f454962f-9d2b-4adc-8462-874506a367b6 330ff46fad8665b0e9034b54000ccf41 {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal"} -C3L-01253.WGS.N.hg38 C3L-01253 UCEC WGS blood_normal CPT0080440002 0ccc9616-79cc-4ff5-b33b-2eac15b4078d_gdc_realn.bam 124998072987 BAM harmonized CPTAC3 b5ce9048-1883-4704-9b11-e8ac3738a5e9 daa0f972fdb2d8e83800866ef8fef88b {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal"} -C3L-01253.WGS.T C3L-01253 UCEC WGS tumor CPT0080400009 CPT0080400009.WholeGenome.RP-1303.bam 65285678740 BAM aligned CPTAC3 28e3a9ca-be71-45fd-af41-44b17398265f 572e45e19af09e3aa11c5e5cc0c2d87c {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor"} -C3L-01253.WGS.T.hg38 C3L-01253 UCEC WGS tumor CPT0080400009 a22d7330-2df5-4cad-9469-65de69d006eb_gdc_realn.bam 97355867158 BAM harmonized CPTAC3 dc7fc77c-0ce3-4ae4-9800-583943850fe9 d169ec156465c76620e4660f607d76d1 {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor"} -C3L-01253.WXS.N C3L-01253 UCEC WXS blood_normal CPT0080440002 CPT0080440002.WholeExome.RP-1303.bam 34875474480 BAM aligned CPTAC3 1f4b8c6c-efac-49b0-a09c-7c8eced9bc5e 90e247df493ae0dc2e99a9bb9380a97d {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal"} -C3L-01253.WXS.N.hg38 C3L-01253 UCEC WXS blood_normal CPT0080440002 0ccc9616-79cc-4ff5-b33b-2eac15b4078d_gdc_realn.bam 47833112363 BAM harmonized CPTAC3 b0341a83-609c-4901-ba96-f76af59d0ec9 b0ae4e9fbe8aea88f775bd4db25d7772 {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal"} -C3L-01253.WXS.T C3L-01253 UCEC WXS tumor CPT0080400009 CPT0080400009.WholeExome.RP-1303.bam 32459559994 BAM aligned CPTAC3 bfc5eee1-fa36-4b16-990a-a7ab210b093f 508aa04027b31a12f2ee623a8ce81147 {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor"} -C3L-01253.WXS.T.hg38 C3L-01253 UCEC WXS tumor CPT0080400009 a22d7330-2df5-4cad-9469-65de69d006eb_gdc_realn.bam 45088213611 BAM harmonized CPTAC3 b35bb305-3e5f-450b-b7d7-53063757be27 549bf32623291df352ead23887d4bcb8 {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor"} -C3L-01256.MethArray.Green.T C3L-01256 UCEC Methylation_Array tumor CPT0073450009 202184990013_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 798148fa-08e4-4a62-8dff-38d3fcc48b51 fd6d149430d5173c52efd46a65102d16 {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor"} -C3L-01256.MethArray.Red.T C3L-01256 UCEC Methylation_Array tumor CPT0073450009 202184990013_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 0ae65b57-e706-4671-8699-99e009975589 5112c0ad07a8de2e342ec67d0632b09b {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor"} -C3L-01256.miRNA-Seq.S35_L007_R1.T C3L-01256 UCEC miRNA-Seq tumor CPT0073450006 181012_UNC32-K00270_0124_AH223CBBXY_AGTTCC_S35_L007_R1_001.unaln.bam 252718413 BAM S35_L007_R1 unaligned CPTAC3 a060cd8c-a085-4f78-a248-18a246871bce cc09d4e29333e78868113fa688afd7fc {"aliquot_tag": "ALQ_99f8241a", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01256.miRNA-Seq.T.hg38 C3L-01256 UCEC miRNA-Seq tumor CPT0073450006 26fb9ce8-40d6-458a-9571-7c14764c6710_mirnaseq_gdc_realn.bam 284445834 BAM harmonized CPTAC3 c8d26989-1990-46b1-bfb0-e70a00622e0a 5a80dfeaf014d1b3d132dfc2bf98dcd9 {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.chimeric.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.chimeric.gdc_realn.bam 177920071 BAM chimeric harmonized CPTAC3 1dd2c3fb-15af-471d-8fc5-094e9ff42795 0f675952a207290c3e48fa8b4df74ee9 {"aliquot_tag": "ALQ_f21c1779", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.chimeric.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.chimeric.gdc_realn.bam 192235173 BAM chimeric harmonized CPTAC3 4d12ffd5-b78d-4c65-95bf-d3918e26b82f 0fcae649d067a6274874f0abaa711a2e {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.genomic.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.genomic.gdc_realn.bam 7428031802 BAM genomic harmonized CPTAC3 69eb43cc-231b-4cee-a5ae-a6d887940ea4 8faf2cccc8a49a2f237ce39ee252e6f5 {"aliquot_tag": "ALQ_f21c1779", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.genomic.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.genomic.gdc_realn.bam 7390728914 BAM genomic harmonized CPTAC3 648d8dc2-262f-4de9-ad8e-fc0e0fe8c28d 13a78fa40fb0f42e42c885df6a63de39 {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.S23_L007_R1.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R1_001.fastq.gz 3761318240 FASTQ S23_L007_R1 unaligned CPTAC3 aafd76a4-f0d2-4e99-bc97-34a7f2c06846 b2195e17b5f26f35a28a0f9ed7bc62b5 {"aliquot_tag": "ALQ_99f8241a", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.S23_L007_R2.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R2_001.fastq.gz 4072906223 FASTQ S23_L007_R2 unaligned CPTAC3 9c0ad385-aa72-4df1-a53b-57f77602a7d7 547473f5a415e5355a94075df9067340 {"aliquot_tag": "ALQ_99f8241a", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.S38_R1.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R1_001.fastq.gz 4634004887 FASTQ S38_R1 unaligned CPTAC3 a2286070-1ca0-4220-995d-4b52f21b7ac1 f07d157075a49ea9ffc6aa4ba68e01fb {"aliquot_tag": "ALQ_f21c1779", "sample": "S38", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.S38_R2.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R2_001.fastq.gz 4805766274 FASTQ S38_R2 unaligned CPTAC3 23da0ca3-9d18-4cef-b71a-1bb7fcc09d40 f84d1f6edbf02c8f19e161fba380d0f5 {"aliquot_tag": "ALQ_f21c1779", "sample": "S38", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.transcriptome.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.transcriptome.gdc_realn.bam 3641956382 BAM transcriptome harmonized CPTAC3 e2c24711-513e-48fc-947a-4003a0c44409 331dee5df5599c00f349c35539a428aa {"aliquot_tag": "ALQ_f21c1779", "gdc_sample_type": "Primary Tumor"} -C3L-01256.RNA-Seq.transcriptome.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.transcriptome.gdc_realn.bam 9325669305 BAM transcriptome harmonized CPTAC3 f15ac041-7682-4434-9920-1247535ee939 f030c2ab9c1d2d8ef1477e3f10f569fe {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor"} -C3L-01256.WGS.N C3L-01256 UCEC WGS blood_normal CPT0073470002 CPT0073470002.WholeGenome.RP-1303.bam 84063332371 BAM aligned CPTAC3 710decdb-c33e-481e-845c-951c5833bcc7 514cd022db160a9b9599afc777672c1f {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal"} -C3L-01256.WGS.N.hg38 C3L-01256 UCEC WGS blood_normal CPT0073470002 2df1178d-478f-43e4-9bb3-69c9cb9bc38e_gdc_realn.bam 126776835461 BAM harmonized CPTAC3 01b7fb65-f024-4aaa-8f7c-ae8d5457633a ab00e86b8ac40e67c8503f749d6fb2b7 {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal"} -C3L-01256.WGS.T C3L-01256 UCEC WGS tumor CPT0073450009 CPT0073450009.WholeGenome.RP-1303.bam 67582100912 BAM aligned CPTAC3 2b69b85e-dd11-41d1-9f4f-785b6d853589 5e1aec39556a4283aeba4a6df2ec3491 {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor"} -C3L-01256.WGS.T.hg38 C3L-01256 UCEC WGS tumor CPT0073450009 cb2e92de-4d9e-4273-bb97-d5310fd76b5b_gdc_realn.bam 101615829449 BAM harmonized CPTAC3 dfc183e0-7cd4-4b7d-b213-902bb7a9daee d8216950762f5f3fa0856a42ec70a1bc {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor"} -C3L-01256.WXS.N C3L-01256 UCEC WXS blood_normal CPT0073470002 CPT0073470002.WholeExome.RP-1303.bam 25711309740 BAM aligned CPTAC3 1044b951-8e3a-4772-a4ed-a38c6715f4df bcf9cb644f5ce3ef88c5c6787a178e64 {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal"} -C3L-01256.WXS.N.hg38 C3L-01256 UCEC WXS blood_normal CPT0073470002 2df1178d-478f-43e4-9bb3-69c9cb9bc38e_gdc_realn.bam 34596967278 BAM harmonized CPTAC3 709a7bc9-9f91-46a9-99e0-0f1f5c8879a1 d8e432cf5997c53dab0c3e6895a5e483 {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal"} -C3L-01256.WXS.T C3L-01256 UCEC WXS tumor CPT0073450009 CPT0073450009.WholeExome.RP-1303.bam 26404562688 BAM aligned CPTAC3 2dd3138f-f66e-431c-8401-bbc8ced59226 b01b3ae805eeadff17a0491c00ab789e {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor"} -C3L-01256.WXS.T.hg38 C3L-01256 UCEC WXS tumor CPT0073450009 cb2e92de-4d9e-4273-bb97-d5310fd76b5b_gdc_realn.bam 36406792655 BAM harmonized CPTAC3 e3ac065a-67d7-4f3d-a9ad-ea2a35806d87 7c22d7caa58b841f94174f5c8d05bd06 {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor"} -C3L-01257.MethArray.Green.T C3L-01257 UCEC Methylation_Array tumor CPT0073520009 202184990052_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dc9e3e10-bf6d-4518-8de0-1adb9cdef92d cf0bc4be9a5ddd4bbfc29af227b946a6 {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor"} -C3L-01257.MethArray.Red.T C3L-01257 UCEC Methylation_Array tumor CPT0073520009 202184990052_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 9c45a574-5d54-496a-ac41-6a1bd87498b9 b6dde5b64889098624f51d99f85ba4f4 {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor"} -C3L-01257.miRNA-Seq.S16_L005_R1.T C3L-01257 UCEC miRNA-Seq tumor CPT0073520013 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L005_R1_001.unaln.bam 215713343 BAM S16_L005_R1 unaligned CPTAC3 b5d0b452-b17f-4b87-9dee-273f2fcb876b 1f82938289c696a780bdccec9cba7a3c {"aliquot_tag": "ALQ_89f5ee61", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01257.miRNA-Seq.T.hg38 C3L-01257 UCEC miRNA-Seq tumor CPT0073520013 d72e1f5e-5cf3-4cee-8054-0599526852df_mirnaseq_gdc_realn.bam 231985536 BAM harmonized CPTAC3 ed635a3f-a4f4-42b8-acba-cca5db91866d 2cb1d52c9ee369c3d3a87b8d37fc2647 {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.chimeric.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.chimeric.gdc_realn.bam 44719522 BAM chimeric harmonized CPTAC3 0f2933f0-b3d1-4096-a356-fe6d17896036 8891bce0c06eb26ce2b1deaba53066be {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.chimeric.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.chimeric.gdc_realn.bam 196067454 BAM chimeric harmonized CPTAC3 ebfe9851-1962-4704-8441-5a57bc1f1de8 df7348da07a8e7d7a7dde96fa02a564a {"aliquot_tag": "ALQ_f1a04bac", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.genomic.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.genomic.gdc_realn.bam 8823544951 BAM genomic harmonized CPTAC3 76d94c5d-68d6-4627-a33c-f218eb5b1f68 a5b5791b5335353c0f4b4b56a6c064b9 {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.genomic.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.genomic.gdc_realn.bam 8826823183 BAM genomic harmonized CPTAC3 95da19fb-a5e1-4f8b-8b44-9b33f98a05c3 ab0a97cd868cca5fe0af7ac1dc6ba615 {"aliquot_tag": "ALQ_f1a04bac", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.S14_L004_R1.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4063064419 FASTQ S14_L004_R1 unaligned CPTAC3 7c9d4661-f204-4d60-b0da-9de70a2d29b7 4552109fe2428b3fc155d6a57682aaaf {"aliquot_tag": "ALQ_89f5ee61", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.S14_L004_R2.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4399535512 FASTQ S14_L004_R2 unaligned CPTAC3 b802ec84-9a75-4c16-bf86-e3b4e2e29561 22e55e021e0dbae07b4935faf9bcf661 {"aliquot_tag": "ALQ_89f5ee61", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.S83_R1.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R1_001.fastq.gz 5281490822 FASTQ S83_R1 unaligned CPTAC3 785c0243-009c-49d7-b4c0-be4734323d54 c212748c4bd31b344f26ee789ad8241a {"aliquot_tag": "ALQ_f1a04bac", "sample": "S83", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.S83_R2.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R2_001.fastq.gz 5478369987 FASTQ S83_R2 unaligned CPTAC3 22101653-18f1-4704-a537-6963329ab127 0b2957b1de3a8cac70a7d71aab820a33 {"aliquot_tag": "ALQ_f1a04bac", "sample": "S83", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.transcriptome.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.transcriptome.gdc_realn.bam 10054871273 BAM transcriptome harmonized CPTAC3 098eba98-9539-4c22-af7e-e224fb708750 d6b24f9e4799070a131bdf0ce95e8c53 {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor"} -C3L-01257.RNA-Seq.transcriptome.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.transcriptome.gdc_realn.bam 4916961531 BAM transcriptome harmonized CPTAC3 d2779095-87a6-445a-a390-6fa7fa0820c2 024812a6324854f7224962c00cdaed42 {"aliquot_tag": "ALQ_f1a04bac", "gdc_sample_type": "Primary Tumor"} -C3L-01257.WGS.N C3L-01257 UCEC WGS blood_normal CPT0073580002 CPT0073580002.WholeGenome.RP-1303.bam 65827543164 BAM aligned CPTAC3 3214d542-a601-4cb3-a721-456702e26547 e1944eba1e5d38f667e840796a43ac8f {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal"} -C3L-01257.WGS.N.hg38 C3L-01257 UCEC WGS blood_normal CPT0073580002 3db8446e-2099-484b-8423-a49189910b49_gdc_realn.bam 98058524518 BAM harmonized CPTAC3 54d040a9-00d4-4a18-bad6-bdeaa1a758ba 40d4d3ca0557435218d6fb40cd8ceac9 {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal"} -C3L-01257.WGS.T C3L-01257 UCEC WGS tumor CPT0073520009 CPT0073520009.WholeGenome.RP-1303.bam 70868851460 BAM aligned CPTAC3 c2dcc5f6-cf1b-4412-ace3-32e83634dbae 19bc11859a6429cabbfa2c8645d982bc {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor"} -C3L-01257.WGS.T.hg38 C3L-01257 UCEC WGS tumor CPT0073520009 e2d35a3b-cb54-4f5f-a99f-5453033ff93f_gdc_realn.bam 105829904013 BAM harmonized CPTAC3 6caaa45a-4ac6-479c-adb2-e947066663f7 50634d804971801003225a3d5de24fd7 {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor"} -C3L-01257.WXS.N C3L-01257 UCEC WXS blood_normal CPT0073580002 CPT0073580002.WholeExome.RP-1303.bam 33213302421 BAM aligned CPTAC3 a034b8b1-e2f4-40c3-b003-b6cde631088e bbe354bc8d007ca2628365d5aacac836 {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal"} -C3L-01257.WXS.N.hg38 C3L-01257 UCEC WXS blood_normal CPT0073580002 3db8446e-2099-484b-8423-a49189910b49_gdc_realn.bam 44941828927 BAM harmonized CPTAC3 fd6b0c0e-dba4-47e8-aa1a-24b2a702de0e 08e4a8b5cc088d663a15220f2a5f8301 {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal"} -C3L-01257.WXS.T C3L-01257 UCEC WXS tumor CPT0073520009 CPT0073520009.WholeExome.RP-1303.bam 27603797956 BAM aligned CPTAC3 ef0001d3-0686-4ba7-9c1d-fbeac4338b84 b62de8380db3949ff2d3be871a9753aa {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor"} -C3L-01257.WXS.T.hg38 C3L-01257 UCEC WXS tumor CPT0073520009 e2d35a3b-cb54-4f5f-a99f-5453033ff93f_gdc_realn.bam 37863459985 BAM harmonized CPTAC3 bba2fa86-ecf4-484d-b7f8-d59cf9dd055c 2b0d72b303503bd4adee48b711caaa2f {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor"} -C3L-01274.MethArray.Green.T C3L-01274 UCEC Methylation_Array tumor CPT0073630009 202176290047_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79ff47c2-6f1f-4e12-b1e1-aa3a5afb1950 7637021fefa24a0bc11c537d3d53abee {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor"} -C3L-01274.MethArray.Red.T C3L-01274 UCEC Methylation_Array tumor CPT0073630009 202176290047_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 5578bb07-2dfc-480c-97c4-eae213ec9da2 13632deb3184892a7239c5f798e70c54 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor"} -C3L-01274.miRNA-Seq.S33_L005_R1.T C3L-01274 UCEC miRNA-Seq tumor CPT0073630006 181119_UNC31-K00269_0165_AH27WCBBXY_GATCAG_S33_L005_R1_001.unaln.bam 173198260 BAM S33_L005_R1 unaligned CPTAC3 9e983688-405e-4887-bf2d-527ebeb08657 cc62011da1687f1f6b7a10bcbc7d5708 {"aliquot_tag": "ALQ_5b7070b1", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01274.miRNA-Seq.T.hg38 C3L-01274 UCEC miRNA-Seq tumor CPT0073630006 6649e770-5ea3-4a10-85ea-c3e169a97213_mirnaseq_gdc_realn.bam 193417284 BAM harmonized CPTAC3 bb060084-7061-40ee-9995-30354766cd92 3a8aa87addbdabeb17407f8ce45e0f83 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.chimeric.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.chimeric.gdc_realn.bam 167678268 BAM chimeric harmonized CPTAC3 a8487de5-e6bf-464a-9b04-713d42eb795d 2adaede6e6928bf3460ce4316506b557 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.chimeric.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.chimeric.gdc_realn.bam 76168275 BAM chimeric harmonized CPTAC3 e6659dd0-abee-4103-876f-102f24927342 cd8f15b1107b7dbee5c33b79095ccde2 {"aliquot_tag": "ALQ_77343902", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.genomic.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.genomic.gdc_realn.bam 8721980831 BAM genomic harmonized CPTAC3 6e0bacc8-4b7e-4052-bd39-e92d5f142cf8 f0760f2604e9c12ce1652ef5a03b8422 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.genomic.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.genomic.gdc_realn.bam 7601166536 BAM genomic harmonized CPTAC3 2b76149b-7cab-4c01-a67a-dab19c3c8019 d7c734f60ab9239a4d820c5fbbb91898 {"aliquot_tag": "ALQ_77343902", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.S11_R1.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R1_001.fastq.gz 3944111426 FASTQ S11_R1 unaligned CPTAC3 5bf7b772-62ed-4b85-a451-550bf9543c19 39ec777b7d1f8072938ada17049cfc9f {"aliquot_tag": "ALQ_77343902", "sample": "S11", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.S11_R2.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R2_001.fastq.gz 4117441845 FASTQ S11_R2 unaligned CPTAC3 03b7e483-eb54-4ae5-8c12-affc5515cafd c4fb5dfdc66d1814020201becaad00ea {"aliquot_tag": "ALQ_77343902", "sample": "S11", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.S2_L006_R1.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4334850295 FASTQ S2_L006_R1 unaligned CPTAC3 adabf69c-bc64-42c6-84cc-40e6c940bfc4 7fe44679100399223ba35cb066eeab6d {"aliquot_tag": "ALQ_5b7070b1", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.S2_L006_R2.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4663453182 FASTQ S2_L006_R2 unaligned CPTAC3 ddfc032c-927c-4358-b288-650e4f767de7 df35bb904dc8b430e0c15680be9cf6a0 {"aliquot_tag": "ALQ_5b7070b1", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.transcriptome.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.transcriptome.gdc_realn.bam 12460186371 BAM transcriptome harmonized CPTAC3 37ecdcb4-60c8-4570-a92f-083c650f022c ed85e856d0ff3a1a336f9921235f0148 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor"} -C3L-01274.RNA-Seq.transcriptome.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.transcriptome.gdc_realn.bam 3970319237 BAM transcriptome harmonized CPTAC3 a2e89930-c87e-4a32-88fd-f2342efe6ac7 8f141ab25f2698ad6fcdb8c9584b0b2f {"aliquot_tag": "ALQ_77343902", "gdc_sample_type": "Primary Tumor"} -C3L-01274.WGS.N C3L-01274 UCEC WGS blood_normal CPT0073650002 CPT0073650002.WholeGenome.RP-1303.bam 60948052243 BAM aligned CPTAC3 b1c0693f-e5ba-4d07-9d6f-f0f2cea3e4ae 14ce0518b46dcd5b8595152e62727c75 {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal"} -C3L-01274.WGS.N.hg38 C3L-01274 UCEC WGS blood_normal CPT0073650002 a173b565-312c-4c20-bd59-afb066c1d7b3_gdc_realn.bam 90075253528 BAM harmonized CPTAC3 17108db7-3252-4f5f-a60a-79a9000ddb69 5aab335a7ee1357cf59ba1c86f843c77 {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal"} -C3L-01274.WGS.T C3L-01274 UCEC WGS tumor CPT0073630009 CPT0073630009.WholeGenome.RP-1303.bam 77523757306 BAM aligned CPTAC3 2c8e5a8f-d394-4c0b-83a5-d71515148bfe e2ef4248cfc7157947b7ee068e239676 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor"} -C3L-01274.WGS.T.hg38 C3L-01274 UCEC WGS tumor CPT0073630009 bf666116-f576-4e26-a536-c70e0cbeaef4_gdc_realn.bam 117764818112 BAM harmonized CPTAC3 7a4f3b93-3970-42cb-9bd5-3baf02a98b8f 26f6ecb82c39a2ff15c0d4972e8e0344 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor"} -C3L-01274.WXS.N C3L-01274 UCEC WXS blood_normal CPT0073650002 CPT0073650002.WholeExome.RP-1303.bam 26348679933 BAM aligned CPTAC3 d28c4c08-12e7-4b5c-bb81-9ac9eaa5c198 ef9bd41709a4c010d11a642eb40a1831 {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal"} -C3L-01274.WXS.N.hg38 C3L-01274 UCEC WXS blood_normal CPT0073650002 a173b565-312c-4c20-bd59-afb066c1d7b3_gdc_realn.bam 35494592471 BAM harmonized CPTAC3 2b16a412-31aa-48a0-a720-3406d1bc0767 2077e36ce977af34ed2c79ab08d55e1b {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal"} -C3L-01274.WXS.T C3L-01274 UCEC WXS tumor CPT0073630009 CPT0073630009.WholeExome.RP-1303.bam 27953926575 BAM aligned CPTAC3 8115a41a-3255-430b-bb65-bd78329f5564 8b6fe34ccc6e66c7eeaf15ea93fa296b {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor"} -C3L-01274.WXS.T.hg38 C3L-01274 UCEC WXS tumor CPT0073630009 bf666116-f576-4e26-a536-c70e0cbeaef4_gdc_realn.bam 38436779438 BAM harmonized CPTAC3 e928f628-a038-4f35-90f2-32109731213c ac2b07b68e677df24c49afc251c953a9 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor"} -C3L-01275.MethArray.Green.T C3L-01275 UCEC Methylation_Array tumor CPT0073730009 202178770006_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 dc19257a-e92d-484d-8706-13dfd7e81c0b 9c59ae687ddd40287147efe5ac496d91 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor"} -C3L-01275.MethArray.Red.T C3L-01275 UCEC Methylation_Array tumor CPT0073730009 202178770006_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 b8ba33c7-9157-43cc-a81b-56c96fdc8dbe a38ca5dbf73585e34b3ddd5b4a0b457a {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor"} -C3L-01275.miRNA-Seq.S31_L007_R1.T C3L-01275 UCEC miRNA-Seq tumor CPT0073730006 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L007_R1_001.unaln.bam 252093420 BAM S31_L007_R1 unaligned CPTAC3 7cd73eb0-8381-4c03-9354-953341045ba2 8694a7ae8b49f2a27f14d940238c67f1 {"aliquot_tag": "ALQ_902ca314", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01275.miRNA-Seq.T.hg38 C3L-01275 UCEC miRNA-Seq tumor CPT0073730006 fc67a81a-e459-4391-b965-b3734bc593a3_mirnaseq_gdc_realn.bam 278918188 BAM harmonized CPTAC3 5f4112c3-dd69-4d1a-ad02-1d0a3a4faced 2da98d84f762ee363e86f5be006cd86d {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.chimeric.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.chimeric.gdc_realn.bam 166745410 BAM chimeric harmonized CPTAC3 10915be1-d552-4c25-8f41-41c4765a6358 832d405c5cfb8ef354d6769bccb88d58 {"aliquot_tag": "ALQ_8fa4fdb3", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.chimeric.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.chimeric.gdc_realn.bam 91827027 BAM chimeric harmonized CPTAC3 e2687044-cf34-4a95-9f5e-d08d8362b15b 36832a08ce0327390c5bdee5be72981c {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.genomic.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.genomic.gdc_realn.bam 8758709819 BAM genomic harmonized CPTAC3 1cd02c63-89ed-4ded-94b6-1245219f3112 f2da1b905033856ad34ef099ac6ea5b6 {"aliquot_tag": "ALQ_8fa4fdb3", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.genomic.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.genomic.gdc_realn.bam 8326569091 BAM genomic harmonized CPTAC3 994f4781-3aff-4fac-bcc9-bf03c5d59609 1470d85e8d2d9278e2d112e76320185f {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.S1_L006_R1.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R1_001.fastq.gz 3988434359 FASTQ S1_L006_R1 unaligned CPTAC3 4b44bd70-9e38-452a-878f-4875577eaa2c 3f6c5593444f3ae3799f8456de20316d {"aliquot_tag": "ALQ_902ca314", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.S1_L006_R2.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R2_001.fastq.gz 4442041976 FASTQ S1_L006_R2 unaligned CPTAC3 555f14f3-dae8-486d-8306-df6603731765 2562397a52a1f4ea004b767e8887713a {"aliquot_tag": "ALQ_902ca314", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.S40_R1.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R1_001.fastq.gz 5661768051 FASTQ S40_R1 unaligned CPTAC3 084e10ac-9706-41cc-961e-13473e82b21d 372ed36604bb3ae33e03e226cd6a863b {"aliquot_tag": "ALQ_8fa4fdb3", "sample": "S40", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.S40_R2.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R2_001.fastq.gz 5905290807 FASTQ S40_R2 unaligned CPTAC3 34921176-558d-46f8-9cf2-ed74cebffb7b b944db3781bb90a1ab66ae388e4f9e11 {"aliquot_tag": "ALQ_8fa4fdb3", "sample": "S40", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.transcriptome.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.transcriptome.gdc_realn.bam 4975839940 BAM transcriptome harmonized CPTAC3 169e8e1d-d016-49a9-9a8a-75200752f4bc ab0a78884707a3620496d2c06413655b {"aliquot_tag": "ALQ_8fa4fdb3", "gdc_sample_type": "Primary Tumor"} -C3L-01275.RNA-Seq.transcriptome.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.transcriptome.gdc_realn.bam 11206180008 BAM transcriptome harmonized CPTAC3 ab655e77-80b7-4fe5-8014-538f00f27fe0 4b25a9c7d2f4586457825e9c8f2f4ac4 {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor"} -C3L-01275.WGS.N C3L-01275 UCEC WGS blood_normal CPT0073760002 CPT0073760002.WholeGenome.RP-1303.bam 71113217665 BAM aligned CPTAC3 f76c6579-cf1d-4c7f-b9da-4f1c6b66c6df dba684d8f37b16c150b837d1edcd7fbb {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01275.WGS.N.hg38 C3L-01275 UCEC WGS blood_normal CPT0073760002 069a9d12-aaae-41f8-bcb3-4b2de10d0aec_gdc_realn.bam 105241008960 BAM harmonized CPTAC3 269d555e-a19b-42bf-81bf-4e0c26c978a4 4ef6c5da9891e5c0362335a7b2ef973d {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01275.WGS.T C3L-01275 UCEC WGS tumor CPT0073730009 CPT0073730009.WholeGenome.RP-1303.bam 81276089887 BAM aligned CPTAC3 661241c8-d0d5-4ed5-964c-d6999bdf98fa 4bafbcf6c806ab8b962bb2260a7a3040 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor"} -C3L-01275.WGS.T.hg38 C3L-01275 UCEC WGS tumor CPT0073730009 a9da5378-f198-4cde-a619-1b7834af72a6_gdc_realn.bam 119824973740 BAM harmonized CPTAC3 d3bcdff3-cc7d-4d33-8256-862a2135fca6 9350c0e9de8958a895133103a481a6f0 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor"} -C3L-01275.WXS.N C3L-01275 UCEC WXS blood_normal CPT0073760002 CPT0073760002.WholeExome.RP-1303.bam 25717296407 BAM aligned CPTAC3 ab514c97-e709-4ebc-8e68-728782297243 f73984228aca74fed0e99ad953082d0d {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01275.WXS.N.hg38 C3L-01275 UCEC WXS blood_normal CPT0073760002 069a9d12-aaae-41f8-bcb3-4b2de10d0aec_gdc_realn.bam 34487844815 BAM harmonized CPTAC3 8b94a041-a634-4162-8b99-11f5a880e871 be1f34effa2eca500e84aea2457e3509 {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01275.WXS.T C3L-01275 UCEC WXS tumor CPT0073730009 CPT0073730009.WholeExome.RP-1303.bam 28370087326 BAM aligned CPTAC3 1ebdcb02-870f-49bb-bf92-81e1c1d0099b 7fc65a78ecb31f88fd742d2cd303699e {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor"} -C3L-01275.WXS.T.hg38 C3L-01275 UCEC WXS tumor CPT0073730009 a9da5378-f198-4cde-a619-1b7834af72a6_gdc_realn.bam 39287303390 BAM harmonized CPTAC3 dfa0615b-3d51-4baa-9381-5d7bd4140b88 b124a14e9d6edabc2434854f1a3461b7 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor"} -C3L-01277.MethArray.Green.T C3L-01277 UCEC Methylation_Array tumor CPT0093170009 202234380050_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b000bbfb-c49c-4eb9-ba19-1af8221f21f1 45928b813b8ee42d9e943165af710fdc {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor"} -C3L-01277.MethArray.Red.T C3L-01277 UCEC Methylation_Array tumor CPT0093170009 202234380050_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 92f2b402-3216-4279-8eb7-9a32e9d45fdd 9df3badcc34acb528128c9379214dba2 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor"} -C3L-01277.miRNA-Seq.A.hg38 C3L-01277 UCEC miRNA-Seq tissue_normal CPT0093180006 5af1a647-cc68-4174-b107-bbb8abbeb296_mirnaseq_gdc_realn.bam 333047883 BAM harmonized CPTAC3 0cdf7d00-7f77-4dfe-ba9f-0f6927394f21 e9cd00ea186f973c6bda77ae6a270701 {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01277.miRNA-Seq.S21_L007_R1.T C3L-01277 UCEC miRNA-Seq tumor CPT0093170006 180724_UNC32-K00270_0106_BHWK3MBBXX_TCCCGA_S21_L007_R1_001.unaln.bam 197025026 BAM S21_L007_R1 unaligned CPTAC3 99fcdb54-5c29-4a88-bee5-6e77f57e76f0 584a6bcc7449e0d9543a89b3fd561a18 {"aliquot_tag": "ALQ_a67ff4fb", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01277.miRNA-Seq.S46_L006_R1.A C3L-01277 UCEC miRNA-Seq tissue_normal CPT0093180006 181113_UNC31-K00269_0164_AH23NNBBXY_CGTACG_S46_L006_R1_001.unaln.bam 288696791 BAM S46_L006_R1 unaligned CPTAC3 c62302d2-4b7e-4fcd-9d55-d72efcc2c12e d064f907de0905a2f62c0002148c21c3 {"aliquot_tag": "ALQ_242f632a", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01277.miRNA-Seq.T.hg38 C3L-01277 UCEC miRNA-Seq tumor CPT0093170006 49236849-0f5c-4cbd-a4a6-80215dc69604_mirnaseq_gdc_realn.bam 207749386 BAM harmonized CPTAC3 450c193b-64d6-4465-afb4-7973f0bb8238 daff1337250a85cd6b585335a2e09b86 {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.chimeric.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.chimeric.gdc_realn.bam 45253936 BAM chimeric harmonized CPTAC3 f912b67c-d2c7-425f-8985-cd13419859ad 61654022ef03ade4fce287ec0b5d96f6 {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01277.RNA-Seq.chimeric.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.chimeric.gdc_realn.bam 220263486 BAM chimeric harmonized CPTAC3 2fd1d141-4747-4143-bd80-7a4d323f51e8 7d2593e57b95dc7bccce8884effb2410 {"aliquot_tag": "ALQ_42db3238", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.chimeric.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.chimeric.gdc_realn.bam 71902090 BAM chimeric harmonized CPTAC3 63d25305-dd52-4c32-b28b-840244a26b6e a39c4834ba1ca7bc7f3ffc23ad52a5dd {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.genomic.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.genomic.gdc_realn.bam 8814124542 BAM genomic harmonized CPTAC3 18911020-a935-49cf-ad84-ccbe534b572b 2dfc23b8aa544193566b9e64cc20731a {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01277.RNA-Seq.genomic.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.genomic.gdc_realn.bam 10646099031 BAM genomic harmonized CPTAC3 d880a5d3-9b55-4e5a-ac52-7ee767cfc3f3 88cdee32b09c5573670bff234ab86f34 {"aliquot_tag": "ALQ_42db3238", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.genomic.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.genomic.gdc_realn.bam 11023109274 BAM genomic harmonized CPTAC3 bec4273a-cba7-4f84-ba67-7036f06841af ac48e5d37618b1786b3a8b1600b79c1d {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.S17_R1.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R1_001.fastq.gz 6550911602 FASTQ S17_R1 unaligned CPTAC3 22f78b1b-1060-4f26-9f8a-05805179ede5 c7abaef3612ab638d26436cbfb291d74 {"aliquot_tag": "ALQ_42db3238", "sample": "S17", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.S17_R2.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R2_001.fastq.gz 6658284782 FASTQ S17_R2 unaligned CPTAC3 e4971913-2357-4935-925d-992233dc2d90 bafbb7de3dbd33d0123489c52bb399cd {"aliquot_tag": "ALQ_42db3238", "sample": "S17", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.S21_L006_R1.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 5322892009 FASTQ S21_L006_R1 unaligned CPTAC3 63924d9c-a45f-4223-9e38-6970fea9b0d7 30f50f35f2e1590425d71e5ce8ff74d7 {"aliquot_tag": "ALQ_a67ff4fb", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.S21_L006_R2.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 5627790362 FASTQ S21_L006_R2 unaligned CPTAC3 48205079-1e88-4dba-a40b-04f5a828438b 3c282e6cb12748c6a9412001cee04238 {"aliquot_tag": "ALQ_a67ff4fb", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.S6_L002_R1.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4011758070 FASTQ S6_L002_R1 unaligned CPTAC3 17b6bccb-914a-478f-90f9-4058651af31f 4e55fd03effbd2517d6418ff0a76484e {"aliquot_tag": "ALQ_242f632a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01277.RNA-Seq.S6_L002_R2.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4417437742 FASTQ S6_L002_R2 unaligned CPTAC3 e84ff705-b0c1-4d60-80c5-2c343ff44b85 a650e62dc665e325a620c365120cc6af {"aliquot_tag": "ALQ_242f632a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01277.RNA-Seq.transcriptome.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.transcriptome.gdc_realn.bam 10530454755 BAM transcriptome harmonized CPTAC3 12f28388-aa08-4eaf-b273-01e85a939ea4 1b8990983173549bcc6d112881be80ec {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01277.RNA-Seq.transcriptome.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.transcriptome.gdc_realn.bam 5162538711 BAM transcriptome harmonized CPTAC3 8fcbd240-efee-4550-8232-9da147340319 527eb346842dff88c2d1e159faeb5069 {"aliquot_tag": "ALQ_42db3238", "gdc_sample_type": "Primary Tumor"} -C3L-01277.RNA-Seq.transcriptome.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.transcriptome.gdc_realn.bam 12386909355 BAM transcriptome harmonized CPTAC3 0dceb543-1b4c-4091-a680-9bef508cb1a2 6b85539b48b296000eae70989f7e5480 {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor"} -C3L-01277.WGS.N C3L-01277 UCEC WGS blood_normal CPT0093220002 CPT0093220002.WholeGenome.RP-1303.bam 58733749970 BAM aligned CPTAC3 4889c188-fb41-42db-8018-99fe16ff5545 7f50e38fabdd8dd4f5a2716f4b19c87e {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01277.WGS.N.hg38 C3L-01277 UCEC WGS blood_normal CPT0093220002 3c638e9f-be3f-4094-81b6-f66e67e4ce03_wgs_gdc_realn.bam 84968599555 BAM harmonized CPTAC3 7aa49cd4-a2b8-4263-910d-bef68dade24d 9b2e49c2edbf90e008a88da24eb7d815 {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01277.WGS.T C3L-01277 UCEC WGS tumor CPT0093170009 CPT0093170009.WholeGenome.RP-1303.bam 76600796882 BAM aligned CPTAC3 2b16171b-081d-45e9-b06e-981f863c4a87 ae237973164a1a6e49869600931f02e3 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor"} -C3L-01277.WGS.T.hg38 C3L-01277 UCEC WGS tumor CPT0093170009 f5c81226-3d13-46c6-8324-68bb1aa89a20_wgs_gdc_realn.bam 112328648739 BAM harmonized CPTAC3 16230cf1-74be-49bd-a49e-7962f8d00ea3 b035b789611be48a460ceeccdf387774 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor"} -C3L-01277.WXS.N C3L-01277 UCEC WXS blood_normal CPT0093220002 CPT0093220002.WholeExome.RP-1303.bam 37175288490 BAM aligned CPTAC3 05b96701-139b-47b2-a975-9587bda92574 5dde9cac4d8b1daf062873224a3cd42b {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01277.WXS.N.hg38 C3L-01277 UCEC WXS blood_normal CPT0093220002 3c638e9f-be3f-4094-81b6-f66e67e4ce03_wxs_gdc_realn.bam 49567708392 BAM harmonized CPTAC3 29525b06-1f04-457c-b20d-b635ed2e5ad3 aa4d4ee3b4b2439ffe9923e717d60c32 {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01277.WXS.T C3L-01277 UCEC WXS tumor CPT0093170009 CPT0093170009.WholeExome.RP-1303.bam 37763127712 BAM aligned CPTAC3 a13fd0b4-44d3-4d68-82ec-f734c0a1fec2 089ca4a3b578b80e261b9d7ba32907eb {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor"} -C3L-01277.WXS.T.hg38 C3L-01277 UCEC WXS tumor CPT0093170009 f5c81226-3d13-46c6-8324-68bb1aa89a20_wxs_gdc_realn.bam 52945949501 BAM harmonized CPTAC3 5918a3f7-4181-4570-99a1-512b072ca1e9 77e166ebb26ff4b9e116ff20c9f843a6 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor"} -C3L-01279.MethArray.Green.A C3L-01279 CCRCC Methylation_Array tissue_normal CPT0104170006 204373100108_R01C01_Grn.idat 13677950 IDAT Green NA CPTAC3 5edf682c-5474-4e08-a9a8-c5f2e8bd6ec1 27496d7b2860928ba401edb25d6e04c3 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.MethArray.Green.T C3L-01279 CCRCC Methylation_Array tumor CPT0104160009 202234380061_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2f165a98-c2d4-402e-a306-bbfd152e6c93 1b96bd4c27f4d0a7740dbac4dfd12da8 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor"} -C3L-01279.MethArray.Red.A C3L-01279 CCRCC Methylation_Array tissue_normal CPT0104170006 204373100108_R01C01_Red.idat 13677950 IDAT Red NA CPTAC3 fdb66106-7b62-43a0-9655-36de7d382f68 a73289185d87761fdad9bcf2d187b603 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.MethArray.Red.T C3L-01279 CCRCC Methylation_Array tumor CPT0104160009 202234380061_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 3515802d-69c2-48b2-8914-07d2f31ae5fc d150cb4aced99e7291ed4d2c5b6634b0 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor"} -C3L-01279.miRNA-Seq.A.hg38 C3L-01279 CCRCC miRNA-Seq tissue_normal CPT0104170009 3e319e8a-911b-4d22-a27b-e9889f3c8f8f_mirnaseq_gdc_realn.bam 308417943 BAM harmonized CPTAC3 dc42a43d-7456-43f0-b2e7-beebe76bfa14 0fc04401cb67559d0d0400eeb7aeaa9e {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.miRNA-Seq.S34_L007_R1.T C3L-01279 CCRCC miRNA-Seq tumor CPT0104160006 181108_UNC31-K00269_0163_BH23TVBBXY_CATGGC_S34_L007_R1_001.unaln.bam 165457148 BAM S34_L007_R1 unaligned CPTAC3 9067e0e8-fc5e-4f77-ba22-41d4f2a0d353 4e47ac0f1e1044996c2f79509d4e733b {"aliquot_tag": "ALQ_568cecad", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01279.miRNA-Seq.S36_L002_R1.A C3L-01279 CCRCC miRNA-Seq tissue_normal CPT0104170009 181119_UNC31-K00269_0165_AH27WCBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 275035347 BAM S36_L002_R1 unaligned CPTAC3 164a5a41-d359-4322-bc0c-4db78b1d6d4b c14974b2aa6c491b5ecffc1190803277 {"aliquot_tag": "ALQ_fb53d88c", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.miRNA-Seq.T.hg38 C3L-01279 CCRCC miRNA-Seq tumor CPT0104160006 4184687b-7cad-4881-a135-03bc99541f09_mirnaseq_gdc_realn.bam 178914838 BAM harmonized CPTAC3 10a85ba2-27d3-4c41-9b9e-42bc3cad5a40 4bca88e088464e077d3bae3aeb96e2ed {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor"} -C3L-01279.RNA-Seq.chimeric.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.chimeric.gdc_realn.bam 37390527 BAM chimeric harmonized CPTAC3 9451df8c-e07f-4330-b8dc-edf00f12d6f7 f1f28fec227d05d404c94f96f87f7fa4 {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.RNA-Seq.chimeric.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.chimeric.gdc_realn.bam 32234199 BAM chimeric harmonized CPTAC3 5db9a400-b665-4d9a-a451-3e2ef9317d16 617a517900e02428590948975cfc6e7c {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor"} -C3L-01279.RNA-Seq.genomic.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.genomic.gdc_realn.bam 7988193379 BAM genomic harmonized CPTAC3 8980f50b-d5f9-4428-bb66-ad4bdcd1ab8f fc992719e0f6d44c3c3c3afb8e462ea7 {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.RNA-Seq.genomic.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.genomic.gdc_realn.bam 8751377407 BAM genomic harmonized CPTAC3 61c93a62-8bae-4348-a552-6b4e7e68c4d3 1071f4f80c7cd7daf7e2c3fc3d3c4a35 {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor"} -C3L-01279.RNA-Seq.S4_L001_R1.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3400040430 FASTQ S4_L001_R1 unaligned CPTAC3 870735e3-75f8-488e-af4e-7a82e32779b9 b130ebf753bfadbf68933f6473e44853 {"aliquot_tag": "ALQ_fb53d88c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.RNA-Seq.S4_L001_R2.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R2_001.fastq.gz 3828397539 FASTQ S4_L001_R2 unaligned CPTAC3 202b2906-4d82-4826-9f5a-3c346d5c472d 050c0a68c2161b5f9c7f5a17f8190a55 {"aliquot_tag": "ALQ_fb53d88c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.RNA-Seq.S8_L008_R1.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4227581240 FASTQ S8_L008_R1 unaligned CPTAC3 530e230a-03eb-4b12-9d82-26ddff07506f 82ea9c629def27c9075968c6262cb450 {"aliquot_tag": "ALQ_568cecad", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01279.RNA-Seq.S8_L008_R2.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4627360370 FASTQ S8_L008_R2 unaligned CPTAC3 66952eeb-be7d-4534-bf10-ca74c617ff26 fb4866af1384780e7ad4d0680f61f75b {"aliquot_tag": "ALQ_568cecad", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01279.RNA-Seq.transcriptome.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.transcriptome.gdc_realn.bam 8631925290 BAM transcriptome harmonized CPTAC3 9b5ee0c6-1239-4a68-aa74-863eb49157c4 2a225a010f766e73913ff8920e6937a7 {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.RNA-Seq.transcriptome.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.transcriptome.gdc_realn.bam 11538013499 BAM transcriptome harmonized CPTAC3 d9054789-6efe-4791-99c8-4c7f42e5bb34 5c812fa0d2ec183b4afbf3a591b103dc {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor"} -C3L-01279.WGS.A C3L-01279 CCRCC WGS tissue_normal CPT0104170006 CPT0104170006.WholeGenome.RP-1303.bam 54572911192 BAM aligned CPTAC3 05c884d8-efe8-4fd9-baa1-09ae55d49619 3ec2e75ccd8ed3536235b0d0206c6539 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.WGS.A.hg38 C3L-01279 CCRCC WGS tissue_normal CPT0104170006 891b282e-7f35-4107-ab81-dd592aae747d_wgs_gdc_realn.bam 80028293427 BAM harmonized CPTAC3 87baf592-72d8-4c27-ae81-5c9a34b9df2d 41d352e3385f54c9ebc2a4d7c62a5c2f {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.WGS.N C3L-01279 CCRCC WGS blood_normal CPT0105080002 CPT0105080002.WholeGenome.RP-1303.bam 66683602118 BAM aligned CPTAC3 c8da66cb-698f-42c2-b656-2ddf0412c6e1 49d9cdaa466d90a7281d552814c98e53 {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01279.WGS.N.hg38 C3L-01279 CCRCC WGS blood_normal CPT0105080002 f98a44f1-f2f1-41a6-8824-d0695bf6038f_wgs_gdc_realn.bam 98555196739 BAM harmonized CPTAC3 a3ce5196-7dcf-4fd1-9293-1a08b5e56acc b79b9ee69be5f8d5e42c5822c6a2919b {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01279.WGS.T C3L-01279 CCRCC WGS tumor CPT0104160009 CPT0104160009.WholeGenome.RP-1303.bam 58391419913 BAM aligned CPTAC3 7000d4ab-c5cb-4f07-9aaf-c2ee683bd7a2 d148509a84fe559e0dee5046cc2b4bc3 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor"} -C3L-01279.WGS.T.hg38 C3L-01279 CCRCC WGS tumor CPT0104160009 cba61413-75c2-4ecd-9ff4-4197eb753a73_wgs_gdc_realn.bam 86792752160 BAM harmonized CPTAC3 7bbf3271-9c54-4db8-8283-5adec290de65 1b2ba19c2d33ab08773e00475e6d29ba {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor"} -C3L-01279.WXS.A C3L-01279 CCRCC WXS tissue_normal CPT0104170006 CPT0104170006.WholeExome.RP-1303.bam 21112542920 BAM aligned CPTAC3 c25771ca-26e4-422a-8a80-2996e65f334b 3ca6f5387b3dab2091c9eadca7bd2d7a {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.WXS.A.hg38 C3L-01279 CCRCC WXS tissue_normal CPT0104170006 891b282e-7f35-4107-ab81-dd592aae747d_wxs_gdc_realn.bam 28383396538 BAM harmonized CPTAC3 880eb33a-2e7d-4ee3-a968-854bfe281777 69513cb6969af0f988efe0693d672954 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01279.WXS.N C3L-01279 CCRCC WXS blood_normal CPT0105080002 CPT0105080002.WholeExome.RP-1303.bam 25707909632 BAM aligned CPTAC3 e5f593e7-0503-478a-a6c7-88e85cc00a0e d0c31008eddbb6217bc5b1c2281985f6 {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01279.WXS.N.hg38 C3L-01279 CCRCC WXS blood_normal CPT0105080002 f98a44f1-f2f1-41a6-8824-d0695bf6038f_wxs_gdc_realn.bam 35199849533 BAM harmonized CPTAC3 4e26774d-5eed-477a-8aef-6d0b446d3286 90b632d9e1a2e9a626501ad0a8857bdc {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01279.WXS.T C3L-01279 CCRCC WXS tumor CPT0104160009 CPT0104160009.WholeExome.RP-1303.bam 35855707257 BAM aligned CPTAC3 ac5d0429-3c52-4711-822f-6cd99084bf1d 330a9700a9800c45c1424026e28b4392 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor"} -C3L-01279.WXS.T.hg38 C3L-01279 CCRCC WXS tumor CPT0104160009 cba61413-75c2-4ecd-9ff4-4197eb753a73_wxs_gdc_realn.bam 50315552628 BAM harmonized CPTAC3 7eea3e6d-95c4-4a7b-803a-6fd37db3c087 e98cb11cef00eeac72561786aaa2c346 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor"} -C3L-01281.MethArray.Green.A C3L-01281 CCRCC Methylation_Array tissue_normal CPT0079510009 204930640041_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c4329e50-45af-4e10-8766-0a03f4578e13 0c90a9d55d9d6bafeeef3daca5f11078 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.MethArray.Green.T C3L-01281 CCRCC Methylation_Array tumor CPT0079480009 202184900149_R03C01_Grn.idat 13676256 IDAT Green NA CPTAC3 3cccb205-c27b-4880-9a81-dd3177f6b458 8d2b9ee6cecad55bb0f4ab7f080a36e4 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor"} -C3L-01281.MethArray.Red.A C3L-01281 CCRCC Methylation_Array tissue_normal CPT0079510009 204930640041_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 ee540abc-f386-40ff-8e86-46f33b73f942 cc1d0adfa4131b907103097b09db01e5 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.MethArray.Red.T C3L-01281 CCRCC Methylation_Array tumor CPT0079480009 202184900149_R03C01_Red.idat 13676256 IDAT Red NA CPTAC3 60a079ca-7b46-4840-9a95-94ca8310def6 39cab6810d07e895fbe3caeba794940e {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor"} -C3L-01281.miRNA-Seq.A.hg38 C3L-01281 CCRCC miRNA-Seq tissue_normal CPT0079510006 2bf7a146-8f6b-46a3-8191-1f4d4ab28ab1_mirnaseq_gdc_realn.bam 272646604 BAM harmonized CPTAC3 d92ce0bb-625b-4063-97ef-d0955beb0470 291edf4f414b6221b576c69f20644df5 {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.miRNA-Seq.S5_L001_R1.T C3L-01281 CCRCC miRNA-Seq tumor CPT0079480006 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L001_R1_001.unaln.bam 199167904 BAM S5_L001_R1 unaligned CPTAC3 1a4ace81-70a6-4c15-a49d-42f8e2129ca6 42b859374d5224e5114af9b79594425d {"aliquot_tag": "ALQ_c518bfe5", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01281.miRNA-Seq.S5_L003_R1.A C3L-01281 CCRCC miRNA-Seq tissue_normal CPT0079510006 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L003_R1_001.unaln.bam 243016468 BAM S5_L003_R1 unaligned CPTAC3 5a022b03-d04d-4c92-98ca-0113be3c4ed2 e2be600e56af375368734e816117c1a4 {"aliquot_tag": "ALQ_3540e31", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.miRNA-Seq.T.hg38 C3L-01281 CCRCC miRNA-Seq tumor CPT0079480006 ddea8669-9eb1-4bbc-a9e5-649178e0ecb7_mirnaseq_gdc_realn.bam 228024609 BAM harmonized CPTAC3 7713735b-7304-482d-8ba8-6487c0c1f3c0 5c43f4563c8c02d2d5cda6b0fb7501c2 {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor"} -C3L-01281.RNA-Seq.chimeric.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.chimeric.gdc_realn.bam 71283780 BAM chimeric harmonized CPTAC3 8d121a08-3e6e-4b95-90c6-25b22fa9cbdd 577ce2f4116322b6126929212e95d1ce {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.RNA-Seq.chimeric.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.chimeric.gdc_realn.bam 163461926 BAM chimeric harmonized CPTAC3 96e56b01-4c53-48de-95e6-bda491a1dbc9 2ab6c6493220c7b42f2e98a98e2c013d {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor"} -C3L-01281.RNA-Seq.genomic.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.genomic.gdc_realn.bam 8012830528 BAM genomic harmonized CPTAC3 9b05f2b1-b83b-4baf-8c93-b0cd4202a813 87d3cfd7d40b2ef947a7d7c7c5613fa5 {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.RNA-Seq.genomic.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.genomic.gdc_realn.bam 6898729666 BAM genomic harmonized CPTAC3 2086af95-28ee-420f-a171-1926ac1648b8 963338855e86f9cc0b2fad6730487d00 {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor"} -C3L-01281.RNA-Seq.S17_L006_R1.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R1_001.fastq.gz 4049717564 FASTQ S17_L006_R1 unaligned CPTAC3 87a20970-f166-43c5-9f58-37ab02eb9c3e 189459a22de3fc3bac09f59f550c33da {"aliquot_tag": "ALQ_3540e31", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.RNA-Seq.S17_L006_R2.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R2_001.fastq.gz 4494267024 FASTQ S17_L006_R2 unaligned CPTAC3 29346dc3-bac8-4a23-9e20-d435e4b8ba61 75bceeca2ec62c4aaab7e815f357ad2b {"aliquot_tag": "ALQ_3540e31", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.RNA-Seq.S19_L005_R1.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3586263589 FASTQ S19_L005_R1 unaligned CPTAC3 bb1a5e66-0f58-405f-892f-6734850101b3 9170f2f88db5ebbcc42d352ccc68184a {"aliquot_tag": "ALQ_c518bfe5", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01281.RNA-Seq.S19_L005_R2.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3921737446 FASTQ S19_L005_R2 unaligned CPTAC3 fff48a4b-fe3e-4a6b-aca4-1a6086a61d98 f8b7dbb40850bd5ea21faec09683d2a5 {"aliquot_tag": "ALQ_c518bfe5", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01281.RNA-Seq.transcriptome.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.transcriptome.gdc_realn.bam 10159928168 BAM transcriptome harmonized CPTAC3 044dce65-de28-4ff3-8e7e-a36524f9d839 e2d83b1358690b31138ed4a99062799b {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.RNA-Seq.transcriptome.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.transcriptome.gdc_realn.bam 9818117886 BAM transcriptome harmonized CPTAC3 5155350a-ec77-4133-83a8-bada87304689 a07b9f321a52f90c4b113754986dae0d {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor"} -C3L-01281.WGS.A C3L-01281 CCRCC WGS tissue_normal CPT0079510009 CPT0079510009.WholeGenome.RP-1303.bam 53481861821 BAM aligned CPTAC3 a34e7c15-55ce-4a4c-9117-1a1eb6492963 a6958c699d447cf71e5fef76471e8b21 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.WGS.A.hg38 C3L-01281 CCRCC WGS tissue_normal CPT0079510009 1e0ea22d-76f2-4782-812b-820d5cf5aeb0_wgs_gdc_realn.bam 78347934899 BAM harmonized CPTAC3 14935819-bbcc-4a45-83d1-96b70ef73e02 9b0b8df7acedf1f7b848aa4b8879803c {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.WGS.N C3L-01281 CCRCC WGS blood_normal CPT0080150002 CPT0080150002.WholeGenome.RP-1303.bam 78130486181 BAM aligned CPTAC3 e4cd6fa8-5083-47d0-b680-974edd1b35e0 41d77592cfb53def70bc25cdc01f6bc4 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal"} -C3L-01281.WGS.N.hg38 C3L-01281 CCRCC WGS blood_normal CPT0080150002 8b4cb88a-2ab8-4fe1-8d63-083b17a8c14c_gdc_realn.bam 115837193515 BAM harmonized CPTAC3 4581fd53-4084-4c65-b665-3bf6b29f4c4d 385e2250e278c6050a698db31ccdd828 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal"} -C3L-01281.WGS.T C3L-01281 CCRCC WGS tumor CPT0079480009 CPT0079480009.WholeGenome.RP-1303.bam 85021529181 BAM aligned CPTAC3 0bf76a55-1e51-498b-bb9e-39e3a28b362c b65e101d7cac36ea7abe65d31e9d31ff {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor"} -C3L-01281.WGS.T.hg38 C3L-01281 CCRCC WGS tumor CPT0079480009 2b0a1c97-c220-422d-9579-2721457ce7c2_gdc_realn.bam 126827513998 BAM harmonized CPTAC3 ceaa0651-71c6-4269-a06d-4d335b6eca43 f94a8293765a4f39a4697541e053ae61 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor"} -C3L-01281.WXS.A C3L-01281 CCRCC WXS tissue_normal CPT0079510009 CPT0079510009.WholeExome.RP-1303.bam 30784553922 BAM aligned CPTAC3 25b81c9c-88a6-403a-9b10-3b4840b9fe49 26031be2da65e0ec038d3de95f6bc844 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.WXS.A.hg38 C3L-01281 CCRCC WXS tissue_normal CPT0079510009 1e0ea22d-76f2-4782-812b-820d5cf5aeb0_wxs_gdc_realn.bam 41984371343 BAM harmonized CPTAC3 2eb52c8e-83cb-4af4-a249-10370b3dfa8e 0f8cc4757437bca5a18103f1b69db6a1 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01281.WXS.N C3L-01281 CCRCC WXS blood_normal CPT0080150002 CPT0080150002.WholeExome.RP-1303.bam 20981415531 BAM aligned CPTAC3 cad76c53-f5d0-452e-b36b-914e84da6a88 548cac988bee0a6caf5806fc66ef4840 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal"} -C3L-01281.WXS.N.hg38 C3L-01281 CCRCC WXS blood_normal CPT0080150002 8b4cb88a-2ab8-4fe1-8d63-083b17a8c14c_gdc_realn.bam 28106214520 BAM harmonized CPTAC3 35e20688-de92-443f-812b-9fced7fffcaa e0a2ef73d8c979c8e7228e9bd37bb588 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal"} -C3L-01281.WXS.T C3L-01281 CCRCC WXS tumor CPT0079480009 CPT0079480009.WholeExome.RP-1303.bam 29764350523 BAM aligned CPTAC3 0933d598-56ef-46e5-a4a1-ccc0b14f6e58 f0c26ee45baca02432ebaf60d554f211 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor"} -C3L-01281.WXS.T.hg38 C3L-01281 CCRCC WXS tumor CPT0079480009 2b0a1c97-c220-422d-9579-2721457ce7c2_gdc_realn.bam 41110958463 BAM harmonized CPTAC3 2a742c4c-b8e5-4ca6-a1d3-3cba3b62f273 da61f0a98300e7574c1f8cc0068211c5 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor"} -C3L-01282.MethArray.Green.T C3L-01282 UCEC Methylation_Array tumor CPT0077650006 202184900127_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 407d1d96-b7a5-4511-873e-cf0a08add8bc f803b6f63704855c722e57796a51ed81 {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor"} -C3L-01282.MethArray.Red.T C3L-01282 UCEC Methylation_Array tumor CPT0077650006 202184900127_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 dbec14a7-1a8a-4103-a819-37700b4b41ac 9e6fc4a2393a88c055f69ce2f18caccb {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor"} -C3L-01282.miRNA-Seq.A.hg38 C3L-01282 UCEC miRNA-Seq tissue_normal CPT0077660006 b6c46c53-683d-4eb2-803d-61943a9bca66_mirnaseq_gdc_realn.bam 270375214 BAM harmonized CPTAC3 1f5c3152-3875-4821-8cef-69a0c43212a9 9b2794033479193b347a8521eb8255b7 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.miRNA-Seq.S2_L006_R1.A C3L-01282 UCEC miRNA-Seq tissue_normal CPT0077660006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L006_R1_001.unaln.bam 239196277 BAM S2_L006_R1 unaligned CPTAC3 e055929f-c7b3-46ab-b70e-64d759619101 6022870733cb7b13f9074396da99a862 {"aliquot_tag": "ALQ_67dfdbd2", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.miRNA-Seq.S9_L006_R1.T C3L-01282 UCEC miRNA-Seq tumor CPT0077650009 181012_UNC32-K00270_0124_AH223CBBXY_CCAACA_S9_L006_R1_001.unaln.bam 201715314 BAM S9_L006_R1 unaligned CPTAC3 f1cfc03c-fddf-4891-af91-15d508892fc9 04bfd923956a622dfa4fc23606e2cc5e {"aliquot_tag": "ALQ_b0c0bc93", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01282.miRNA-Seq.T.hg38 C3L-01282 UCEC miRNA-Seq tumor CPT0077650009 d0e7ff6f-5eeb-434d-b37f-1cc2b1974b7f_mirnaseq_gdc_realn.bam 222539338 BAM harmonized CPTAC3 30ef5cb4-256d-401c-a270-2ca009809f12 349118fe0d15cbe00c02958098a094fd {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.chimeric.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.chimeric.gdc_realn.bam 187886582 BAM chimeric harmonized CPTAC3 a48dac8c-8a3b-40f0-af46-31c715c645f5 7b081299555c4180c11958bdc9239be5 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.RNA-Seq.chimeric.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.chimeric.gdc_realn.bam 45155422 BAM chimeric harmonized CPTAC3 125c907f-6175-4772-b7f2-ad909f233b4b 72fe1ef384edf3749bc088f2618ecfe6 {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.chimeric.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.chimeric.gdc_realn.bam 235181996 BAM chimeric harmonized CPTAC3 fdf7a2a9-e7f8-4b56-847a-b0b42f967fd2 cce56632b1a15ec5d9f3b0350e98066e {"aliquot_tag": "ALQ_ec6ce00a", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.genomic.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.genomic.gdc_realn.bam 9190073298 BAM genomic harmonized CPTAC3 9e179bc4-884b-4ae8-b7d3-2afa329f7895 38b864c4bc13c259310ac6d7c21105e5 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.RNA-Seq.genomic.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.genomic.gdc_realn.bam 8427907700 BAM genomic harmonized CPTAC3 25175c36-6361-4908-997a-838eacef7bf5 efa8360760378ae58c2c47739d132463 {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.genomic.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.genomic.gdc_realn.bam 11489593331 BAM genomic harmonized CPTAC3 e7b90a57-4b21-4cd9-8ba4-7fa8f8a4021a 69e57383c3a32beef6e714767ab893bc {"aliquot_tag": "ALQ_ec6ce00a", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.S10_L003_R1.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R1_001.fastq.gz 4353349155 FASTQ S10_L003_R1 unaligned CPTAC3 b75aa815-18fc-4f67-8bd8-e80d70bf58d7 94f2cc6fa1864f9fdc6ce48bf85a9a85 {"aliquot_tag": "ALQ_67dfdbd2", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.RNA-Seq.S10_L003_R2.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R2_001.fastq.gz 4791112274 FASTQ S10_L003_R2 unaligned CPTAC3 6c986f25-4352-4b8d-9f37-2de28762849a 820d743011d3bedb801b2963f942c7d3 {"aliquot_tag": "ALQ_67dfdbd2", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.RNA-Seq.S23_L006_R1.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3941841299 FASTQ S23_L006_R1 unaligned CPTAC3 1055a2ed-0ffd-4a47-b98d-31f79271fecc 98ad26388ca7d1c301c5c2cd64b3bc0c {"aliquot_tag": "ALQ_b0c0bc93", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.S23_L006_R2.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4245797200 FASTQ S23_L006_R2 unaligned CPTAC3 0d5983fb-0657-4a02-8a14-3606ea81b0d8 a63cd802cfa3c3163d50caa400b91656 {"aliquot_tag": "ALQ_b0c0bc93", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.S3_R1.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R1_001.fastq.gz 7280251156 FASTQ S3_R1 unaligned CPTAC3 363597da-f27e-4aca-86a4-13194b2e28c3 950005b7bba3d0d583dc5faf5a8b3f08 {"aliquot_tag": "ALQ_ec6ce00a", "sample": "S3", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.S3_R2.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R2_001.fastq.gz 7567392704 FASTQ S3_R2 unaligned CPTAC3 7d678625-0da7-4b47-9c0e-bbd21840b73d cfa90c94e61605bfed7e153d6e50172d {"aliquot_tag": "ALQ_ec6ce00a", "sample": "S3", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.transcriptome.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.transcriptome.gdc_realn.bam 11138518448 BAM transcriptome harmonized CPTAC3 9b173ff0-3d39-49b3-a29e-2ba275bb95e6 7bf3826eee47b1ae6a9bc1c0cbbcbaf6 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.RNA-Seq.transcriptome.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.transcriptome.gdc_realn.bam 8911439619 BAM transcriptome harmonized CPTAC3 8511d705-71c0-4633-bce6-feeb6414bde9 8d5c0639f8d7d25e0c65374c5ad1ca30 {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor"} -C3L-01282.RNA-Seq.transcriptome.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.transcriptome.gdc_realn.bam 6443706109 BAM transcriptome harmonized CPTAC3 ec9bc92d-e0ec-4b75-9d13-0699cfb26b53 733a829ea73281df5045115e908b50ec {"aliquot_tag": "ALQ_ec6ce00a", "gdc_sample_type": "Primary Tumor"} -C3L-01282.WGS.A C3L-01282 UCEC WGS tissue_normal CPT0077660009 CPT0077660009.WholeGenome.RP-1303.bam 62732216484 BAM aligned CPTAC3 cbcb4407-f6ba-411a-aeac-9dce5be9de95 9cec5c4cef03838759f3393ccda2e0fb {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.WGS.A.hg38 C3L-01282 UCEC WGS tissue_normal CPT0077660009 ecb5ce69-21c6-425d-bdb6-11324b8875f9_wgs_gdc_realn.bam 92021527934 BAM harmonized CPTAC3 b9bf3672-ae78-450d-a3e9-76ce6611866c b8dc4a536cc0a6e887f257e7fce741e7 {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.WGS.N C3L-01282 UCEC WGS blood_normal CPT0080070001 CPT0080070001.WholeGenome.RP-1303.bam 71596914409 BAM aligned CPTAC3 7fc79f05-0d6b-4279-82d2-d9730cbffef7 213513cf3c1644afde1daac0350fa9df {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-01282.WGS.N.hg38 C3L-01282 UCEC WGS blood_normal CPT0080070001 c7d1a1e3-525d-4ba3-85fe-f27b9c31a232_gdc_realn.bam 110743527474 BAM harmonized CPTAC3 2b3e454f-b10f-4fa3-be38-5be8b26150e4 a7e78ede3297a39be504c9ad021a804f {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-01282.WGS.T C3L-01282 UCEC WGS tumor CPT0077650006 CPT0077650006.WholeGenome.RP-1303.bam 63409623659 BAM aligned CPTAC3 b60e793a-e912-4f99-af58-327b8a7059a3 41589cb809bad9e7491edc8371c415fa {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor"} -C3L-01282.WGS.T.hg38 C3L-01282 UCEC WGS tumor CPT0077650006 bdb69ab0-ab7e-42b7-a661-ddf5a6001729_gdc_realn.bam 94461339679 BAM harmonized CPTAC3 58cbc0e7-4448-4ecc-807e-f7386431c790 60559592806fd8a6c8d4ea45d43afc0d {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor"} -C3L-01282.WXS.A C3L-01282 UCEC WXS tissue_normal CPT0077660009 CPT0077660009.WholeExome.RP-1303.bam 35148629841 BAM aligned CPTAC3 b341a996-4fc3-4154-a6f7-0fb0025cc402 a121d3e79912eb66d86c2cb262e6bb23 {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.WXS.A.hg38 C3L-01282 UCEC WXS tissue_normal CPT0077660009 ecb5ce69-21c6-425d-bdb6-11324b8875f9_wxs_gdc_realn.bam 47546542875 BAM harmonized CPTAC3 8290011a-66a1-4eae-935b-28682276f577 1ce8a351520614a98b2aff6c29406a85 {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01282.WXS.N C3L-01282 UCEC WXS blood_normal CPT0080070001 CPT0080070001.WholeExome.RP-1303.bam 26655479726 BAM aligned CPTAC3 c9435953-c43f-4d11-9d66-af1c5b100aaf ffe340c876c2e5e81692edc9baf3380a {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-01282.WXS.N.hg38 C3L-01282 UCEC WXS blood_normal CPT0080070001 c7d1a1e3-525d-4ba3-85fe-f27b9c31a232_gdc_realn.bam 35643618252 BAM harmonized CPTAC3 66b11653-2708-4457-a500-f5c599cdc2d0 36a0f297ffea6fdd9057d7d2e72208a6 {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-01282.WXS.T C3L-01282 UCEC WXS tumor CPT0077650006 CPT0077650006.WholeExome.RP-1303.bam 29311902267 BAM aligned CPTAC3 0deb5f00-8493-433d-a994-78fb8b5ad7b3 4a80e0cec4e867534d7d24bc64a39178 {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor"} -C3L-01282.WXS.T.hg38 C3L-01282 UCEC WXS tumor CPT0077650006 bdb69ab0-ab7e-42b7-a661-ddf5a6001729_gdc_realn.bam 40723764826 BAM harmonized CPTAC3 17017778-73ee-4163-8c32-767f45e148d9 be8cf8eb40fae9b700640c69e0436042 {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor"} -C3L-01283.MethArray.Green.T C3L-01283 CCRCC Methylation_Array tumor CPT0079380009 202178770079_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 dd2c0439-0851-48e4-b142-7f15a2cdb7e8 389925146065e0304a317d3edd184a18 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor"} -C3L-01283.MethArray.Red.T C3L-01283 CCRCC Methylation_Array tumor CPT0079380009 202178770079_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 415154e1-82c6-4df0-a1b0-d1c8eec90ed2 66501c78a41ed5c538e61cb17064d2a6 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor"} -C3L-01283.miRNA-Seq.S26_L007_R1.T C3L-01283 CCRCC miRNA-Seq tumor CPT0079380006 181012_UNC32-K00270_0124_AH223CBBXY_ACAGTG_S26_L007_R1_001.unaln.bam 228171810 BAM S26_L007_R1 unaligned CPTAC3 d08205ca-0db8-4769-af6e-48d5c7be7256 ab4e756e66f883cdaee1ffe3d12c9ccb {"aliquot_tag": "ALQ_d81d8f5d", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01283.miRNA-Seq.T.hg38 C3L-01283 CCRCC miRNA-Seq tumor CPT0079380006 f2f944fa-496c-4caa-a09f-b9f4f91a264e_mirnaseq_gdc_realn.bam 253663718 BAM harmonized CPTAC3 ca111531-0ab0-4185-8157-58bc231d7545 0e4707a32faa2194978f6a4dcb52c2cf {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor"} -C3L-01283.RNA-Seq.chimeric.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.chimeric.gdc_realn.bam 134928172 BAM chimeric harmonized CPTAC3 22cc5a7b-bb23-452b-bad9-90eb3557d522 e692fab237da8bd2231eaa794cf00545 {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor"} -C3L-01283.RNA-Seq.genomic.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.genomic.gdc_realn.bam 7242651177 BAM genomic harmonized CPTAC3 cdd2074f-1d25-494e-8b0a-7d7dd0c21ffd 4fbd8f8a020da978327fe555254501ca {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor"} -C3L-01283.RNA-Seq.S13_L004_R1.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3706511563 FASTQ S13_L004_R1 unaligned CPTAC3 4cd023ec-9cf8-4808-a620-5ba0a21f54ae c8291f0af138ab346dbd453084d5cf4d {"aliquot_tag": "ALQ_d81d8f5d", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01283.RNA-Seq.S13_L004_R2.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3998841470 FASTQ S13_L004_R2 unaligned CPTAC3 56176ec2-2e38-4022-b4aa-3bd26b8a9b89 5d15ad34118c975659b71dfcce824d32 {"aliquot_tag": "ALQ_d81d8f5d", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01283.RNA-Seq.transcriptome.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.transcriptome.gdc_realn.bam 9784353976 BAM transcriptome harmonized CPTAC3 ccd88077-b72e-479f-8a95-5dd43f85398d 15743111e10a56f61d9313ae524ca13d {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor"} -C3L-01283.WGS.N C3L-01283 CCRCC WGS blood_normal CPT0080120001 CPT0080120001.WholeGenome.RP-1303.bam 76650176414 BAM aligned CPTAC3 56c3411f-c3e5-4c4f-8e1c-ec6937e6126f 94ea3254c7e686bc825415197e1ae523 {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01283.WGS.N.hg38 C3L-01283 CCRCC WGS blood_normal CPT0080120001 e8c358f4-8994-4b68-aa8a-521b69eee0f9_gdc_realn.bam 113942588506 BAM harmonized CPTAC3 897b6ee0-2fdb-4563-af8e-ff9ffed0170e 74ba4854ed4b884ed344b4ac2f07a9bc {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01283.WGS.T C3L-01283 CCRCC WGS tumor CPT0079380009 CPT0079380009.WholeGenome.RP-1303.bam 74320762577 BAM aligned CPTAC3 eb9dd8cf-fe3a-48b1-8090-cf0f584eec71 ea2340bb59bc131979926a7aac1538b1 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor"} -C3L-01283.WGS.T.hg38 C3L-01283 CCRCC WGS tumor CPT0079380009 378ea411-3d58-4f9a-803d-8b7b89c9a5b3_gdc_realn.bam 110635260938 BAM harmonized CPTAC3 26c17bc9-eea5-4ec9-80b1-6a9e04d5221e 1697253761ed17db477412ff7a51cdb9 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor"} -C3L-01283.WXS.N C3L-01283 CCRCC WXS blood_normal CPT0080120001 CPT0080120001.WholeExome.RP-1303.bam 32085522774 BAM aligned CPTAC3 708bc783-46c9-4bf8-aa04-6ebbbe5410d6 0ec33070d652319d635e1ddcf7584512 {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01283.WXS.N.hg38 C3L-01283 CCRCC WXS blood_normal CPT0080120001 e8c358f4-8994-4b68-aa8a-521b69eee0f9_gdc_realn.bam 43112561185 BAM harmonized CPTAC3 8d29cc75-bf30-4b44-a15e-5612ff9ca054 8558ef5ede01abfabb4088b776278fa8 {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01283.WXS.T C3L-01283 CCRCC WXS tumor CPT0079380009 CPT0079380009.WholeExome.RP-1303.bam 25497345225 BAM aligned CPTAC3 4c1d75f1-1fbb-4b4d-848d-7ebf03f36720 c071a89fb78060cd94d719bd41c3d532 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor"} -C3L-01283.WXS.T.hg38 C3L-01283 CCRCC WXS tumor CPT0079380009 378ea411-3d58-4f9a-803d-8b7b89c9a5b3_gdc_realn.bam 34985381875 BAM harmonized CPTAC3 b2e8bff6-307d-4f95-902d-f89c6b0a2401 10f6bce2d07135a569a8013d3508b32f {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor"} -C3L-01285.ADD_b1157386.MethArray.Green.T C3L-01285 LSCC Methylation_Array tumor CPT0087190009 203219720203_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 22ed4990-0f17-4b9b-85fe-1058026ad5c7 7658406412d9bf25d3fdb12d0ce8cd47 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01285.ADD_b1157386.MethArray.Red.T C3L-01285 LSCC Methylation_Array tumor CPT0087190009 203219720203_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 f3861979-fe9e-4ff2-892a-192fc5fdb2f9 21a8f7d1f8bb8311651d9b9a71657157 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01285.ADD_b1157386.WGS.T C3L-01285 LSCC WGS tumor CPT0087190009 CPT0087190009.WholeGenome.RP-1303.bam 56749005869 BAM aligned CPTAC3 e3ce3d5c-db6b-4b43-9de6-f5dd8f63b249 754a03006cecd35177cf7c2e35967cc2 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01285.ADD_b1157386.WGS.T.hg38 C3L-01285 LSCC WGS tumor CPT0087190009 09f170eb-d0fd-4f2c-818f-20bdfa042fb6_wgs_gdc_realn.bam 83723210431 BAM harmonized CPTAC3 86676d44-42fe-4224-b835-65d8597dd17f c6f05f99b444e512814ce0ffad402391 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01285.ADD_b1157386.WXS.T C3L-01285 LSCC WXS tumor CPT0087190009 CPT0087190009.WholeExome.RP-1303.bam 31154542517 BAM aligned CPTAC3 9d8fdc95-e214-4ede-8da1-f4785ee6ec91 8ba4ff6a3c7e9b568ee41d000bd7310a {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01285.ADD_b1157386.WXS.T.hg38 C3L-01285 LSCC WXS tumor CPT0087190009 09f170eb-d0fd-4f2c-818f-20bdfa042fb6_wxs_gdc_realn.bam 42998316223 BAM harmonized CPTAC3 6d6e2b9d-4d1c-42b4-a6cb-756b8d0ca803 be5dc34c60fce9b5e95de68c3136e91f {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01285.MethArray.Green.A C3L-01285 LSCC Methylation_Array tissue_normal CPT0087210006 203219670106_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 484d19ae-e7cf-4748-a344-c3fe37f5a647 9929bc792e4080d37c3fb66079cac973 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.MethArray.Red.A C3L-01285 LSCC Methylation_Array tissue_normal CPT0087210006 203219670106_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 ad8b17b9-ed6e-4faa-90de-499605c390ee 371a6f8c68d882e59c4e38b4a86ba493 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.miRNA-Seq.A.hg38 C3L-01285 LSCC miRNA-Seq tissue_normal CPT0087210009 ba7e3a8d-cdfe-4931-94bb-c511097ad500_mirnaseq_gdc_realn.bam 263692028 BAM harmonized CPTAC3 58f9f58d-8859-4ee0-9295-a2042a127f1c 1865177a46e1aaa2757d64d373062789 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.miRNA-Seq.S38_L008_R1.T C3L-01285 LSCC miRNA-Seq tumor CPT0087190006 180724_UNC32-K00270_0106_BHWK3MBBXX_CCGTCC_S38_L008_R1_001.unaln.bam 225495030 BAM S38_L008_R1 unaligned CPTAC3 2cd86fa8-c2ec-4f82-b51a-bf56525aaff9 4ef2d6f6589fdff19f8e29bab3780628 {"aliquot_tag": "ALQ_21aa6e17", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01285.miRNA-Seq.S44_L006_R1.A C3L-01285 LSCC miRNA-Seq tissue_normal CPT0087210009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGGCC_S44_L006_R1_001.unaln.bam 234051497 BAM S44_L006_R1 unaligned CPTAC3 c04dd017-f07b-4d8b-b0e9-bf4e614c7ed9 9d7a002f3164bcf65b9690818a647f6a {"aliquot_tag": "ALQ_7f14ae9", "sample": "S44", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.miRNA-Seq.T.hg38 C3L-01285 LSCC miRNA-Seq tumor CPT0087190006 7ee852f2-56c1-424a-9699-50528125019c_mirnaseq_gdc_realn.bam 242606284 BAM harmonized CPTAC3 31b811ec-b22e-41e1-8dec-8b518a373e0a a109a9a16eca8b60f8af92cbee457e99 {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor"} -C3L-01285.RNA-Seq.chimeric.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.chimeric.gdc_realn.bam 33247562 BAM chimeric harmonized CPTAC3 9bfb1269-2950-4f6b-8c51-04cac43d7ae1 aafb806e90a2a964cc0c6e9635bae515 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.RNA-Seq.chimeric.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.chimeric.gdc_realn.bam 43576811 BAM chimeric harmonized CPTAC3 fec913ce-39ee-4da5-aaef-0f9d499f5dfa 04361fec1e400b0558014187b6cfc476 {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor"} -C3L-01285.RNA-Seq.genomic.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.genomic.gdc_realn.bam 6565682993 BAM genomic harmonized CPTAC3 7b9c4a5c-337f-49dd-917c-d306bf11a7e9 a8ee808331beb93d15126f90769fc476 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.RNA-Seq.genomic.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.genomic.gdc_realn.bam 7522829351 BAM genomic harmonized CPTAC3 1fe1f83f-9784-4356-90b2-c795609b32f5 e02c6601d2460dee118a6ad0b35cf420 {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor"} -C3L-01285.RNA-Seq.S12_L003_R1.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3037892491 FASTQ S12_L003_R1 unaligned CPTAC3 3580e292-7009-461f-87fe-52b973745274 39188ea5e46f2aaa9d93558ca5069897 {"aliquot_tag": "ALQ_7f14ae9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.RNA-Seq.S12_L003_R2.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3332813643 FASTQ S12_L003_R2 unaligned CPTAC3 e3e636bb-f22b-4dca-8c05-1190386bd6d7 8b8db290f814c7e7c33961e9e14d8af9 {"aliquot_tag": "ALQ_7f14ae9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.RNA-Seq.S7_L002_R1.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3722565553 FASTQ S7_L002_R1 unaligned CPTAC3 6d178311-7b59-4974-b5e1-96e7944378e3 3d72470d99eac46e53d57200c6818315 {"aliquot_tag": "ALQ_21aa6e17", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01285.RNA-Seq.S7_L002_R2.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3925972669 FASTQ S7_L002_R2 unaligned CPTAC3 6b06b248-5a0e-4709-af77-0bfebc899a0a 7223fea0208e26b4f1e9b57215238f2b {"aliquot_tag": "ALQ_21aa6e17", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01285.RNA-Seq.transcriptome.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.transcriptome.gdc_realn.bam 8235406334 BAM transcriptome harmonized CPTAC3 ab21406d-2a66-42c2-9080-d7428e8bfdbd 04f4db55060e4c79f72cda6638e249e0 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.RNA-Seq.transcriptome.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.transcriptome.gdc_realn.bam 9630903231 BAM transcriptome harmonized CPTAC3 dc6debc2-7f99-4575-9836-99cf2dfb3b91 1272799b75cb2efb89437151b12f465f {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor"} -C3L-01285.WGS.A C3L-01285 LSCC WGS tissue_normal CPT0087210006 CPT0087210006.WholeGenome.RP-1303.bam 60404295878 BAM aligned CPTAC3 9975e347-f468-4c4f-918f-e9e573902eec 061dd03e80c738ebca9c689f3f158454 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.WGS.A.hg38 C3L-01285 LSCC WGS tissue_normal CPT0087210006 68478f98-036d-4812-9b6d-a8a850925cb3_wgs_gdc_realn.bam 87580693686 BAM harmonized CPTAC3 8cb38e1a-2a6d-43f1-92d4-0f101237408f 1c9aaad48bc05e706216bf202d4aadc2 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.WGS.N C3L-01285 LSCC WGS blood_normal CPT0087480002 CPT0087480002.WholeGenome.RP-1303.bam 68319294486 BAM aligned CPTAC3 05bc5d98-4031-43df-b125-c3d66da4c6de e172062cb9d41b3305212cad9af17ce1 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01285.WGS.N.hg38 C3L-01285 LSCC WGS blood_normal CPT0087480002 e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wgs_gdc_realn.bam 100210891212 BAM harmonized CPTAC3 f52e8430-6879-4a01-b417-9f9221970f98 05d2d3adb5691e5c9a6cd5bcfe486307 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01285.WXS.A C3L-01285 LSCC WXS tissue_normal CPT0087210006 CPT0087210006.WholeExome.RP-1303.bam 37894290150 BAM aligned CPTAC3 0963b06c-23c2-4249-9bdf-40d806fd19e9 d85c4ed1c1383785d516c4350b163045 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.WXS.A.hg38 C3L-01285 LSCC WXS tissue_normal CPT0087210006 68478f98-036d-4812-9b6d-a8a850925cb3_wxs_gdc_realn.bam 49934861081 BAM harmonized CPTAC3 84c740d9-f1dc-4b7d-91a1-010e2aa16846 e40f3cdee528e612cc1cbaf8c6b29f0b {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01285.WXS.N C3L-01285 LSCC WXS blood_normal CPT0087480002 CPT0087480002.WholeExome.RP-1303.bam 27836285935 BAM aligned CPTAC3 795cbd55-5fda-4e77-8702-d3920da20c1d b33bab09f4e0dc17390fa112eceb5f51 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01285.WXS.N.hg38 C3L-01285 LSCC WXS blood_normal CPT0087480002 e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wxs_gdc_realn.bam 38641817752 BAM harmonized CPTAC3 425b6b9a-af16-45d3-995d-790e291ca478 4a9d765443cf73073029e5f7d8a9d2a6 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01286.DUP_3a13eee.MethArray.Green.T C3L-01286 CCRCC Methylation_Array tumor CPT0086940009 204367470124_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 b44e188c-0878-400f-af62-52165e0b9fa8 da7b16ec5d5b96b8a95662838fee0ee4 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_3a13eee.MethArray.Red.T C3L-01286 CCRCC Methylation_Array tumor CPT0086940009 204367470124_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 9858e47c-fcd6-41fa-9d99-1e69bab6674d 65abd3e59355ca7c4ebb0f388f69bb6e {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_3a13eee.WGS.T C3L-01286 CCRCC WGS tumor CPT0086940009 CPT0086940009.WholeGenome.RP-2158.bam 24064476755 BAM aligned CPTAC3 1de59e38-405c-4bd1-8668-1ef5cc069e75 345ea743562c2c0ac5f6fd2d9c452898 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_3a13eee.WGS.T.hg38 C3L-01286 CCRCC WGS tumor CPT0086940009 3273386b-8642-4645-8d20-da00c02430dd_wgs_gdc_realn.bam 72262014428 BAM harmonized CPTAC3 b5c44ee3-a80a-4278-8fbf-8ccb26dc6907 8f72eb6f31502a47508eccb8e9f14fb1 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_3a13eee.WXS.T C3L-01286 CCRCC WXS tumor CPT0086940009 CPT0086940009.WholeExome.RP-1303.bam 20984438578 BAM aligned CPTAC3 87f6237d-f3fa-4114-a385-7c234844f66d 1db24985f0f3468195c2d1c14f0c87f3 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_3a13eee.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086940009 3273386b-8642-4645-8d20-da00c02430dd_wxs_gdc_realn.bam 28411448324 BAM harmonized CPTAC3 2bb02a3b-f6dc-43fb-ab33-d235bfdba3d5 40ce1318b6fd3f8806659af642168c07 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_79616d8e.MethArray.Green.T C3L-01286 CCRCC Methylation_Array tumor CPT0086960009 204372030085_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 58be5587-c8b0-4d17-9b24-14151a8f1678 754c0ead494da4e11eec0e2a65c02e6a {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_79616d8e.MethArray.Red.T C3L-01286 CCRCC Methylation_Array tumor CPT0086960009 204372030085_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 34e3608c-0ec3-49da-b67b-a6debc61555d 03b71cebab52bbf4bd97405a75a80c83 {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_79616d8e.WGS.T C3L-01286 CCRCC WGS tumor CPT0086960009 CPT0086960009.WholeGenome.RP-2158.bam 28387083981 BAM aligned CPTAC3 897c4ce8-0551-4454-b473-624a1664080e 471c5f19483825d3bcec6b7d5cd5ff91 {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_79616d8e.WGS.T.hg38 C3L-01286 CCRCC WGS tumor CPT0086960009 020028de-c4ec-4699-a174-79639c6ee6bd_wgs_gdc_realn.bam 85450385411 BAM harmonized CPTAC3 601ed550-d4e7-41c9-9aac-91462165fac0 6b2e3bf208a66a1b44c85c1f085a0a50 {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_79616d8e.WXS.T C3L-01286 CCRCC WXS tumor CPT0086960009 CPT0086960009.WholeExome.RP-1303.bam 48709874164 BAM aligned CPTAC3 d4c353ab-065e-4b2e-a4d5-f245b69b437c 039df81f98053427f6d11b5c1a372cce {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_79616d8e.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086960009 020028de-c4ec-4699-a174-79639c6ee6bd_wxs_gdc_realn.bam 68537385151 BAM harmonized CPTAC3 d2badeed-7ed0-451b-bcd8-4f78fb2b265b b9595721352345ead8aeb8b49a33ef5d {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_931e237f.miRNA-Seq.S12_L004_R1.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086940006 200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L004_R1_001.unaln.bam 183791928 BAM S12_L004_R1 unaligned CPTAC3 12897640-8046-49f3-97d3-2141b7a0fbd7 fd9f3e2bd13a2f8ac92d16063760276c {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_931e237f.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086940006 9e98a4b6-d3c1-4be6-abf7-8c3b23660024_mirnaseq_gdc_realn.bam 201336741 BAM harmonized CPTAC3 60675bcc-4a1f-491d-8d3c-f1d2255c5a7b 0957034e6a8916e3af766467e4576ab4 {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_931e237f.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.chimeric.gdc_realn.bam 208678659 BAM chimeric harmonized CPTAC3 ba6acc72-6c4b-4072-b477-e6bfe3618510 fdf5500d82a28f548b053e9c78f992dc {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_931e237f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.genomic.gdc_realn.bam 8016068559 BAM genomic harmonized CPTAC3 62455dc5-e7f4-47f9-a13d-be311c9ed9d2 a552d649a301be7545d74e85b34111df {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_931e237f.RNA-Seq.S22_L006_R1.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R1_001.fastq.gz 3975358314 FASTQ S22_L006_R1 unaligned CPTAC3 8cde48de-4e58-439a-8be7-9df3c665e913 b95083e19f5390ae9fe0128b3e29c77f {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_931e237f.RNA-Seq.S22_L006_R2.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R2_001.fastq.gz 4553952342 FASTQ S22_L006_R2 unaligned CPTAC3 05abf494-6e36-49bc-82b0-c00d8d43bba4 b3ba7a79233838cb1a0bf5fc1da64ac3 {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_931e237f.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.transcriptome.gdc_realn.bam 11555576846 BAM transcriptome harmonized CPTAC3 ea2f47a0-9eb0-4791-b3ee-a3ee6fc32348 6e1b1b97f8be4d4567db346f827dc200 {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_e9de701f.miRNA-Seq.S15_L004_R1.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086960006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAATCG_S15_L004_R1_001.unaln.bam 251964153 BAM S15_L004_R1 unaligned CPTAC3 9daa5cb1-886d-4531-9bf3-054ca6131646 3408905f3ec4a4de772b9b475f875255 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_e9de701f.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086960006 9cb77589-64a9-4033-93a3-d92790f43def_mirnaseq_gdc_realn.bam 274032277 BAM harmonized CPTAC3 5479f99a-a7d4-453b-8367-77eb676a68fc 92549aa7e606c4e4132baec8dd889923 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_e9de701f.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.chimeric.gdc_realn.bam 271581567 BAM chimeric harmonized CPTAC3 a9e60890-0667-4938-8ce2-dae95fc45b0d 95aa104702793b10519ba7957574634a {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_e9de701f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.genomic.gdc_realn.bam 7740888311 BAM genomic harmonized CPTAC3 962d235e-7805-4702-b4e2-f1da8cf96cee 609a78b1aff6e24a2f1e6a0aca71ada6 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_e9de701f.RNA-Seq.S23_L006_R1.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R1_001.fastq.gz 3713606868 FASTQ S23_L006_R1 unaligned CPTAC3 13262c45-16ad-4c4d-8b2f-332613c9e5af bb7c9748587fc60489576a46895273a0 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_e9de701f.RNA-Seq.S23_L006_R2.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R2_001.fastq.gz 4364596156 FASTQ S23_L006_R2 unaligned CPTAC3 d81807be-d2cb-4a97-83f0-6999d9282f5a 660cd4e0691f9d182fcac6a84897b527 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01286.DUP_e9de701f.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.transcriptome.gdc_realn.bam 10500467641 BAM transcriptome harmonized CPTAC3 80c1e594-f077-41bd-a787-bc96f4f453cf b8ab4166b7e918205ee5b5cce0239e71 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01286.MethArray.Green.A C3L-01286 CCRCC Methylation_Array tissue_normal CPT0086970009 203027390029_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 df2ff300-0973-4f0d-a656-9e7b855d5186 64f4d08a6330af43260e99f87aa4a2fc {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.MethArray.Green.T C3L-01286 CCRCC Methylation_Array tumor CPT0086950009 202176300001_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0a817c99-ca6f-4012-9afa-f115ff0859e4 71f5e7158c7d9c2d63769e54a60cba16 {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor"} -C3L-01286.MethArray.Red.A C3L-01286 CCRCC Methylation_Array tissue_normal CPT0086970009 203027390029_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 e02f45ab-52f2-4795-84e4-1fccdca7b231 5259347b0bcb0ac31de51746208567a0 {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.MethArray.Red.T C3L-01286 CCRCC Methylation_Array tumor CPT0086950009 202176300001_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 66262ed3-30d1-4cbc-bb0c-d4ba644df1ca 324972838adbf66dca108731e6eeb709 {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor"} -C3L-01286.miRNA-Seq.A.hg38 C3L-01286 CCRCC miRNA-Seq tissue_normal CPT0086970006 999675db-cee5-4c69-984a-3ceb6f854f7c_mirnaseq_gdc_realn.bam 175265370 BAM harmonized CPTAC3 338cd42a-1ab2-4891-b578-273d60bfcc21 258ba7ab946c26fc989c35ad23a51e64 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.miRNA-Seq.S16_L005_R1.A C3L-01286 CCRCC miRNA-Seq tissue_normal CPT0086970006 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L005_R1_001.unaln.bam 152344550 BAM S16_L005_R1 unaligned CPTAC3 eb0c04ae-dd29-4342-b668-3bfffabf2775 0154b3054edcf4386d5af2052bc34034 {"aliquot_tag": "ALQ_d4be59af", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.miRNA-Seq.S2_L001_R1.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086950006 181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 233567705 BAM S2_L001_R1 unaligned CPTAC3 e590a1e3-dd10-4e73-aa9a-c48bbaf21566 16ead761e1f969794fd18c334ffd59f1 {"aliquot_tag": "ALQ_ae7e0acf", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01286.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086950006 57a78a5e-e720-45b9-a768-56f624f814b8_mirnaseq_gdc_realn.bam 252515829 BAM harmonized CPTAC3 d605c5e3-1362-4a41-89f6-8a132fb81df0 872decc857fa8982a12307da225c3d01 {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor"} -C3L-01286.RNA-Seq.chimeric.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.chimeric.gdc_realn.bam 107978724 BAM chimeric harmonized CPTAC3 9a6d581b-4809-4a1a-aa47-0f265b8cce26 cdd6c0113dd21f51b298cef0fa531da3 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.chimeric.gdc_realn.bam 35282551 BAM chimeric harmonized CPTAC3 f64aef9a-e33f-4536-bae9-c5e164228100 3b30b81fb3059b15f4a3846ecc3eee64 {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor"} -C3L-01286.RNA-Seq.genomic.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.genomic.gdc_realn.bam 8751369807 BAM genomic harmonized CPTAC3 76b4a2ac-6047-4cb9-8ad5-11f99d50316e cdf74474a0ff1614dfe37ca82774f550 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.genomic.gdc_realn.bam 7522799887 BAM genomic harmonized CPTAC3 f5d18902-48ae-4f5e-9709-fc17291894ce 78738c022396f00717123c8218812fea {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor"} -C3L-01286.RNA-Seq.S6_L006_R1.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R1_001.fastq.gz 3814402880 FASTQ S6_L006_R1 unaligned CPTAC3 0d7011ca-0c48-43ef-8143-4c0b5e342cc8 c4459cd61fbc128c058245f75b23e434 {"aliquot_tag": "ALQ_ae7e0acf", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01286.RNA-Seq.S6_L006_R2.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R2_001.fastq.gz 4005785828 FASTQ S6_L006_R2 unaligned CPTAC3 c07931d4-4634-4705-8c0f-f7c78ce8b017 cc8008b6ab1670339bb95d90e6cec480 {"aliquot_tag": "ALQ_ae7e0acf", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01286.RNA-Seq.S8_L002_R1.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R1_001.fastq.gz 4256220377 FASTQ S8_L002_R1 unaligned CPTAC3 7c03923c-a1f3-44cc-a70c-89a22a27f780 d29be8e3b9a01e412920400d1695d87b {"aliquot_tag": "ALQ_d4be59af", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.RNA-Seq.S8_L002_R2.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R2_001.fastq.gz 4199001179 FASTQ S8_L002_R2 unaligned CPTAC3 387efbbe-ed80-4e0d-a72d-bc8dad68a2e5 7fb35cffe86c84e18681d75baa58122e {"aliquot_tag": "ALQ_d4be59af", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.RNA-Seq.transcriptome.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.transcriptome.gdc_realn.bam 10000734072 BAM transcriptome harmonized CPTAC3 a7bdd739-52bd-40ef-adf5-3b3f24672ab6 77db7c9866ab21e249191bc88f9cf5e1 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.transcriptome.gdc_realn.bam 11504963563 BAM transcriptome harmonized CPTAC3 80db8ae3-6e95-49e2-8819-f399d9364b79 75692990618d49f62c3fbac21d8ddf06 {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor"} -C3L-01286.WGS.A C3L-01286 CCRCC WGS tissue_normal CPT0086970009 CPT0086970009.WholeGenome.RP-1303.bam 53853615673 BAM aligned CPTAC3 7bfa8592-7045-45f3-8026-4fcb84a90abc 3a52d40c6e8f1cc59ff749087c207783 {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.WGS.A.hg38 C3L-01286 CCRCC WGS tissue_normal CPT0086970009 76a1e6c8-1257-40b0-b2e0-941a1a66b0da_wgs_gdc_realn.bam 79057723249 BAM harmonized CPTAC3 1dcd48c0-d3b4-4655-8954-ff719cc20919 511012405b36ddd218b48a1547d4be4d {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.WGS.N C3L-01286 CCRCC WGS blood_normal CPT0087450002 CPT0087450002.WholeGenome.RP-1303.bam 70732044450 BAM aligned CPTAC3 2d7cda6e-14d2-4361-8d0c-1b23a4774337 8d6ab47db7dc36df6c09068a272f0d05 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01286.WGS.N.hg38 C3L-01286 CCRCC WGS blood_normal CPT0087450002 d82565ca-eaa7-41fe-8a36-6cd4ec201b64_gdc_realn.bam 105941787422 BAM harmonized CPTAC3 bf602db8-93c8-4773-b99a-7078fae45412 973138a015a03605c15350214d23c3e4 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01286.WGS.T C3L-01286 CCRCC WGS tumor CPT0086950009 CPT0086950009.WholeGenome.RP-1303.bam 67552549913 BAM aligned CPTAC3 85dafd55-c89e-4ce8-a69e-155d23806c67 dcbfa3a8b98416a0525af540e77c065a {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor"} -C3L-01286.WGS.T.hg38 C3L-01286 CCRCC WGS tumor CPT0086950009 055ee558-21d4-4aff-8edd-54f646918acc_gdc_realn.bam 101583923015 BAM harmonized CPTAC3 c58468f9-c36e-4bbb-af61-73e0f75f125d 006aae8bc5729572dbe98c42ee7ba96a {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor"} -C3L-01286.WXS.A C3L-01286 CCRCC WXS tissue_normal CPT0086970009 CPT0086970009.WholeExome.RP-1303.bam 41429659386 BAM aligned CPTAC3 16e163ea-bb0d-49e7-abb5-9e969c580287 f096ebe11672bdf888874bfc19636d75 {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.WXS.A.hg38 C3L-01286 CCRCC WXS tissue_normal CPT0086970009 76a1e6c8-1257-40b0-b2e0-941a1a66b0da_wxs_gdc_realn.bam 55832622700 BAM harmonized CPTAC3 738ac470-1442-499d-949e-ec07e8738a1c 39d11fb345933402dff46953c090cd2f {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01286.WXS.N C3L-01286 CCRCC WXS blood_normal CPT0087450002 CPT0087450002.WholeExome.RP-1303.bam 30524990035 BAM aligned CPTAC3 0320078f-441a-4022-8054-801fb802626c d7434b87d2f8b158e9587fbd2551fab8 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01286.WXS.N.hg38 C3L-01286 CCRCC WXS blood_normal CPT0087450002 d82565ca-eaa7-41fe-8a36-6cd4ec201b64_gdc_realn.bam 41430327836 BAM harmonized CPTAC3 c44e27d0-9c27-42c1-8a29-760ae836bab5 ca8c38e7d8e4fa0609b9f54cae8f3c33 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01286.WXS.T C3L-01286 CCRCC WXS tumor CPT0086950009 CPT0086950009.WholeExome.RP-1303.bam 31052727047 BAM aligned CPTAC3 815a8e47-a93e-441f-abde-23b93423d09d 626ce0f0cb5d435326ea8df6123674de {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor"} -C3L-01286.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086950009 055ee558-21d4-4aff-8edd-54f646918acc_gdc_realn.bam 43614684455 BAM harmonized CPTAC3 b7647bbe-e07f-45e9-84e3-1d0073c81f28 2c5cf62ff951ac58c9baabd5ee157953 {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_1f17bad5.miRNA-Seq.S22_L005_R1.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079420009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L005_R1_001.unaln.bam 295681447 BAM S22_L005_R1 unaligned CPTAC3 b415b5e9-0f18-40bc-a775-76ff89768368 1ba5b2ae546c368ed9bafe44b5d70844 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_1f17bad5.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079420009 b4f80031-9316-4c99-a31f-74effdca81ea_mirnaseq_gdc_realn.bam 323901188 BAM harmonized CPTAC3 c000d894-8dce-4352-bea2-16e204ddab90 6f02ab2aad9d509fc27cdc8d24b45b55 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_1f17bad5.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.chimeric.gdc_realn.bam 234239446 BAM chimeric harmonized CPTAC3 aac9f80d-988a-4555-991c-85ff1a3db48f b75a81d2b06ef121a576afed0511512d {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_1f17bad5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.genomic.gdc_realn.bam 8212188292 BAM genomic harmonized CPTAC3 1c29e8dc-0079-475f-b549-7a9fa011a9ba 32607385d8f5dac0b3f29ea6378abe51 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_1f17bad5.RNA-Seq.S41_L007_R1.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R1_001.fastq.gz 3848758785 FASTQ S41_L007_R1 unaligned CPTAC3 61a7995b-61cc-4d4c-a894-3cf34cf6428d d95e5224758e8daf721d3024190e3f9a {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_1f17bad5.RNA-Seq.S41_L007_R2.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R2_001.fastq.gz 4414315910 FASTQ S41_L007_R2 unaligned CPTAC3 0fae67c7-b141-487b-a4af-d45b25b6f81d bf0fca031df63f28a05f799f061f43e4 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_1f17bad5.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.transcriptome.gdc_realn.bam 10705082462 BAM transcriptome harmonized CPTAC3 e2354afd-1e54-4a8e-b078-531b6a0274b2 84116fa03c03a098cf08be910f282a99 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_65d7e9b5.miRNA-Seq.S38_L005_R1.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079400009 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L005_R1_001.unaln.bam 313342157 BAM S38_L005_R1 unaligned CPTAC3 098a5f29-49cd-4a32-ba63-c8488549e5e5 52ec2debd04b53ac113deb148916598a {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_65d7e9b5.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079400009 89e836ab-cb30-435a-9c66-64939e3252d8_mirnaseq_gdc_realn.bam 349946578 BAM harmonized CPTAC3 1dab0cb1-8f81-4aff-919c-c1bb877657de 3bfa447290c82429c14b799c702c0413 {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_65d7e9b5.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.chimeric.gdc_realn.bam 167757996 BAM chimeric harmonized CPTAC3 cd28fae3-5efb-4259-abb4-2fa80181ccf2 7459f6235410d478edafc9cbc5cf9ec2 {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_65d7e9b5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.genomic.gdc_realn.bam 7929939281 BAM genomic harmonized CPTAC3 9057c15b-ceca-4d3e-b95e-71bcd30e893a 5537b5629098135a0edbd8bf2ba98fdb {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_65d7e9b5.RNA-Seq.S42_L007_R1.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R1_001.fastq.gz 3684659898 FASTQ S42_L007_R1 unaligned CPTAC3 d65261b4-8bde-4d0e-8575-7eaf615c6e5d 11d1a6c9f3b6bbe9b8bede163cafd22c {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_65d7e9b5.RNA-Seq.S42_L007_R2.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R2_001.fastq.gz 4314615042 FASTQ S42_L007_R2 unaligned CPTAC3 054227df-d99a-4fe5-a411-061ccb226e8c 11c53a4c81289676b26a7344a44b709f {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_65d7e9b5.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.transcriptome.gdc_realn.bam 11048732152 BAM transcriptome harmonized CPTAC3 c116682f-59a7-4e32-b863-3b7f3b4f3431 cca5331d0e4d0db892cb7e67951e741c {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_91de521c.MethArray.Green.T C3L-01287 CCRCC Methylation_Array tumor CPT0079420012 204367470127_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 3d25a9c8-5e6a-442f-92e0-1df43e0f6f01 f9983238c92621bba2ebc5be0320e141 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_91de521c.MethArray.Red.T C3L-01287 CCRCC Methylation_Array tumor CPT0079420012 204367470127_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 2f8ecc89-5f68-4dc8-aa7f-18098edd5edc cb0802801194fe570ba9fd95f3625815 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_91de521c.WGS.T C3L-01287 CCRCC WGS tumor CPT0079420012 CPT0079420012.WholeGenome.RP-2158.bam 29385157935 BAM aligned CPTAC3 af5307d9-20fe-41bb-a020-206be88995c6 e806b64a6a04fd1b3e9646382f4d582d {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_91de521c.WGS.T.hg38 C3L-01287 CCRCC WGS tumor CPT0079420012 b633f5e7-ed74-4749-a8c7-8469862e148a_wgs_gdc_realn.bam 88840400832 BAM harmonized CPTAC3 2e33ced0-8140-405c-be51-187c29548aba 3568ced3033f9c366728135ce0f94cc8 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_91de521c.WXS.T C3L-01287 CCRCC WXS tumor CPT0079420012 CPT0079420012.WholeExome.RP-1303.bam 18616711740 BAM aligned CPTAC3 2112b0a9-7037-4c84-be14-36d997228bf4 39f4aa62d9ff197749151b9b94eb22ba {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_91de521c.WXS.T.hg38 C3L-01287 CCRCC WXS tumor CPT0079420012 b633f5e7-ed74-4749-a8c7-8469862e148a_wxs_gdc_realn.bam 26408331070 BAM harmonized CPTAC3 61d8dd60-193e-4e48-957c-044881c90985 9444bfd76a4b6f12b4e935b79f343392 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_eb1e017c.MethArray.Green.T C3L-01287 CCRCC Methylation_Array tumor CPT0079400012 204372030011_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 f3a8e55b-36f0-4dc8-90b0-97e107689fd8 82583ad704445cdbdbb64236676b98b4 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_eb1e017c.MethArray.Red.T C3L-01287 CCRCC Methylation_Array tumor CPT0079400012 204372030011_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 327b06ce-2bf4-47c1-b2c2-274db67130a2 9d931a94cd5037b85e109b540a2e4f41 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_eb1e017c.WGS.T C3L-01287 CCRCC WGS tumor CPT0079400012 CPT0079400012.WholeGenome.RP-2158.bam 27466933230 BAM aligned CPTAC3 1bb59817-5af1-483d-8a79-4aa026930be5 c4a62a82661bce0b7d93cc8e493e54b3 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_eb1e017c.WGS.T.hg38 C3L-01287 CCRCC WGS tumor CPT0079400012 c92a1f84-f7a3-4332-8ab9-b64859f501cf_wgs_gdc_realn.bam 79439566813 BAM harmonized CPTAC3 5c7ec8ba-8b38-47c7-b5d5-fd82bb3774a2 a49f3bbc2e4da818144c43cae37814c8 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_eb1e017c.WXS.T C3L-01287 CCRCC WXS tumor CPT0079400012 CPT0079400012.WholeExome.RP-1303.bam 19704483775 BAM aligned CPTAC3 b607e677-46be-4a1a-9dc6-953e88ea1638 2c3baa5f7ace8181b827f9d7056c6348 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.DUP_eb1e017c.WXS.T.hg38 C3L-01287 CCRCC WXS tumor CPT0079400012 c92a1f84-f7a3-4332-8ab9-b64859f501cf_wxs_gdc_realn.bam 26662031760 BAM harmonized CPTAC3 16a1b3db-e208-446c-a4ac-f22b36aa7fd8 6cc1b11202e9ce236c8c1e35469a32eb {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01287.MethArray.Green.T C3L-01287 CCRCC Methylation_Array tumor CPT0079410009 202178770045_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3accc92b-f813-4e0b-ad5e-fb260d344300 1c7c8f8695257d4b72f9f1b06df9b9bc {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor"} -C3L-01287.MethArray.Red.T C3L-01287 CCRCC Methylation_Array tumor CPT0079410009 202178770045_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 56eff7b2-bcdd-4eb1-9758-3b553c2b6d27 57a859e71cf11d740b5fcf0281f73bc7 {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor"} -C3L-01287.miRNA-Seq.A.hg38 C3L-01287 CCRCC miRNA-Seq tissue_normal CPT0079430006 ee722bb1-db91-46ff-bbf7-989ee5954824_mirnaseq_gdc_realn.bam 242693626 BAM harmonized CPTAC3 9d428339-03c6-493a-ae84-749e238d750e 602c61a2b0725dc56772f14e23e2b3e8 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.miRNA-Seq.S2_L003_R1.A C3L-01287 CCRCC miRNA-Seq tissue_normal CPT0079430006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L003_R1_001.unaln.bam 219604775 BAM S2_L003_R1 unaligned CPTAC3 11a4b592-52f8-41bc-a8ef-4885dca97bab 676672b128153c720935ab1e6b08b56f {"aliquot_tag": "ALQ_b2c88ef4", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.miRNA-Seq.S4_L001_R1.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079410006 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L001_R1_001.unaln.bam 159949140 BAM S4_L001_R1 unaligned CPTAC3 384b760a-1bc5-4dac-8c46-b16c3d289001 d02093f0e43fafee76b4671fc0ea6c50 {"aliquot_tag": "ALQ_c808dd94", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079410006 3197d373-5a6f-4e45-bc8e-2f5a6c7186e8_mirnaseq_gdc_realn.bam 183581269 BAM harmonized CPTAC3 78cd47d3-01cf-40a0-846d-eb6712102401 72db28b2372e357e95b2685f51ce651d {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor"} -C3L-01287.RNA-Seq.chimeric.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.chimeric.gdc_realn.bam 86909169 BAM chimeric harmonized CPTAC3 1d5c7868-82bc-416a-8cd3-89142eae09bf b40cdb788fd12260713c718db7de7be1 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.chimeric.gdc_realn.bam 151200069 BAM chimeric harmonized CPTAC3 eda17d6d-f9a0-4bb9-b779-a9888210400a b1760ba9aede3628a332e75d48c0e062 {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor"} -C3L-01287.RNA-Seq.genomic.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.genomic.gdc_realn.bam 8770191947 BAM genomic harmonized CPTAC3 2bcc7552-a0f6-4edf-8b85-be8054074ed8 5dcdf5751b30d08701a4b44e369e0e59 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.genomic.gdc_realn.bam 7474290808 BAM genomic harmonized CPTAC3 16bdf1e7-f4e1-42cd-a958-23fb4e5681e4 eb7929923b60290775650c2baf2783e2 {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor"} -C3L-01287.RNA-Seq.S16_L004_R1.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3997328288 FASTQ S16_L004_R1 unaligned CPTAC3 ffb43c31-d570-4796-8b3a-fcc3cd19c884 b7ffb509ade29296d2cd5e3aa4f5de09 {"aliquot_tag": "ALQ_c808dd94", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.RNA-Seq.S16_L004_R2.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R2_001.fastq.gz 4217433923 FASTQ S16_L004_R2 unaligned CPTAC3 123a7b3b-32f8-4460-910d-f05757a239a8 8dc222d65c0fe33bbe5890758209cca6 {"aliquot_tag": "ALQ_c808dd94", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01287.RNA-Seq.S1_L007_R1.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R1_001.fastq.gz 4432088711 FASTQ S1_L007_R1 unaligned CPTAC3 35c21dfb-4da7-4c62-961a-5724f2353fa6 93c66831374cb06dcbaad11e9fde49d4 {"aliquot_tag": "ALQ_b2c88ef4", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.RNA-Seq.S1_L007_R2.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R2_001.fastq.gz 4684276351 FASTQ S1_L007_R2 unaligned CPTAC3 e45e4ad2-c8e1-4c06-81e8-647f36e01b5d 64ae7dcfc12825e67f90bbafeb8399f1 {"aliquot_tag": "ALQ_b2c88ef4", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.RNA-Seq.transcriptome.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.transcriptome.gdc_realn.bam 11724674064 BAM transcriptome harmonized CPTAC3 a7df5e56-90e7-44f1-82db-08b189b19547 801c3f3b70af1d8f23dd3db24601d839 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.transcriptome.gdc_realn.bam 11513130066 BAM transcriptome harmonized CPTAC3 3b6662df-abd1-4a97-84b0-4a2d1f3aab4d 14403efadc77dfd5c96a7b4fde712f2c {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor"} -C3L-01287.scRNA-Seq.S1_L003_R1.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R1_001.fastq.gz 5310421935 FASTQ S1_L003_R1 unaligned CPTAC3 17ae6831-89e0-48ac-9494-c0eef843ee1b 7a22317d94393a81ff10ce36a767b68a {"aliquot_tag": "ALQ_ffc253cb", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.scRNA-Seq.S1_L003_R2.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R2_001.fastq.gz 5310421935 FASTQ S1_L003_R2 unaligned CPTAC3 c668590d-aa67-4384-bb99-bc7a84f99a5e 7a22317d94393a81ff10ce36a767b68a {"aliquot_tag": "ALQ_ffc253cb", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01287.scRNA-Seq.S2_L003_R1.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R1_001.fastq.gz 5772404933 FASTQ S2_L003_R1 unaligned CPTAC3 c4ab83b0-c2ae-41b4-b8be-8e869ae4a29b aed9ea0bade87afdf697eb6dfe1f1260 {"aliquot_tag": "ALQ_850200ab", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01287.scRNA-Seq.S2_L003_R2.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R2_001.fastq.gz 20767153821 FASTQ S2_L003_R2 unaligned CPTAC3 beb30d25-bd64-4eac-a89f-6994cc5c79e2 447d7709baeab287d036a97ad43168c6 {"aliquot_tag": "ALQ_850200ab", "sample": "S2", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01287.WGS.A C3L-01287 CCRCC WGS tissue_normal CPT0079430009 CPT0079430009.WholeGenome.RP-1303.bam 56547235872 BAM aligned CPTAC3 db50ab6f-f97c-4f2e-8f50-5f2aa394cf58 6a9149181c133576f46c726ac5722b27 {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.WGS.A.hg38 C3L-01287 CCRCC WGS tissue_normal CPT0079430009 3d55cf96-5355-4926-a2ad-a0d585794c90_wgs_gdc_realn.bam 82914064751 BAM harmonized CPTAC3 41dac961-197a-4e4e-a974-eb27f7be69a7 bfd9ded39444ac9e2ca459f8c9dd1782 {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.WGS.N C3L-01287 CCRCC WGS blood_normal CPT0080130002 CPT0080130002.WholeGenome.RP-1303.bam 67898864269 BAM aligned CPTAC3 936e07f1-b6c0-4bf7-bff2-8deb40ae9cc6 19b4ebf9d9df52e3729a87a84dad1093 {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal"} -C3L-01287.WGS.N.hg38 C3L-01287 CCRCC WGS blood_normal CPT0080130002 5ed32977-dc68-4499-91a2-14b00a4c0c9e_gdc_realn.bam 100728101712 BAM harmonized CPTAC3 29f7f641-3124-4a9f-8ca3-9470781a8cce 4cff788f53e36810742f3e22c0796d3a {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal"} -C3L-01287.WGS.T C3L-01287 CCRCC WGS tumor CPT0079410009 CPT0079410009.WholeGenome.RP-1303.bam 62240059423 BAM aligned CPTAC3 b77bb41a-4465-471e-ba89-af4993df7cb0 8ac4acab05c1e1c14dba9cc8ccecb5fd {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor"} -C3L-01287.WGS.T.hg38 C3L-01287 CCRCC WGS tumor CPT0079410009 07514a87-8290-46cf-9276-ed86d25cafcb_gdc_realn.bam 93389218671 BAM harmonized CPTAC3 e7f02283-8e98-450f-8c1e-132e9f78cee2 66e07a11a7d0dc1e6f3b15546ebdb55a {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor"} -C3L-01287.WXS.A C3L-01287 CCRCC WXS tissue_normal CPT0079430009 CPT0079430009.WholeExome.RP-1303.bam 38075391370 BAM aligned CPTAC3 e919dd9f-54cc-44ce-91fe-994cd321702f 31627758c7accd77242970fe1f6b4a93 {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.WXS.A.hg38 C3L-01287 CCRCC WXS tissue_normal CPT0079430009 3d55cf96-5355-4926-a2ad-a0d585794c90_wxs_gdc_realn.bam 51929128191 BAM harmonized CPTAC3 97295447-04b9-40eb-a949-97523ed5a81d 9d32a85447151f5a2ea3d9241f605d0b {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01287.WXS.N C3L-01287 CCRCC WXS blood_normal CPT0080130002 CPT0080130002.WholeExome.RP-1303.bam 25563735605 BAM aligned CPTAC3 3dca7d9d-4a61-4f5e-b755-95f91bbd6ca3 2d30c42c54aa54380f5ec724dc49a020 {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal"} -C3L-01287.WXS.N.hg38 C3L-01287 CCRCC WXS blood_normal CPT0080130002 5ed32977-dc68-4499-91a2-14b00a4c0c9e_gdc_realn.bam 34480365456 BAM harmonized CPTAC3 8f61ee95-ee30-47d2-b678-3b345ff918f8 2454f7475519c8e355157183ecc72b8b {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal"} -C3L-01287.WXS.T C3L-01287 CCRCC WXS tumor CPT0079410009 CPT0079410009.WholeExome.RP-1303.bam 35485000060 BAM aligned CPTAC3 4e7b65e8-2d77-41a3-9e4a-0e3c0af81d85 94b61a270fa8bc8371820f3a6238aeeb {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor"} -C3L-01287.WXS.T.hg38 C3L-01287 CCRCC WXS tumor CPT0079410009 07514a87-8290-46cf-9276-ed86d25cafcb_gdc_realn.bam 48626755556 BAM harmonized CPTAC3 e58d856a-e047-41f2-8700-4a7f61158cd4 f4329505e84451bfd3d0a0d67ecaf261 {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor"} -C3L-01288.MethArray.Green.T C3L-01288 CCRCC Methylation_Array tumor CPT0079230009 202184900128_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 28d6b96b-846f-4d74-a865-066d2a1d421a 6da87a08c1594b842b0767c04ae42755 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor"} -C3L-01288.MethArray.Red.T C3L-01288 CCRCC Methylation_Array tumor CPT0079230009 202184900128_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cdd2b2b3-62be-4dda-9a18-51b2e701105f 5c171d47ccbcba4e7951c79648264267 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor"} -C3L-01288.miRNA-Seq.S24_L007_R1.T C3L-01288 CCRCC miRNA-Seq tumor CPT0079230006 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L007_R1_001.unaln.bam 149132347 BAM S24_L007_R1 unaligned CPTAC3 9a4d074f-077b-4b6a-b4af-9b2c9948d0b5 9474f28fe8007640b5bfe6f02d5d07a4 {"aliquot_tag": "ALQ_64916de9", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01288.miRNA-Seq.T.hg38 C3L-01288 CCRCC miRNA-Seq tumor CPT0079230006 45d65852-13f3-4d05-99f0-a18e9c9174c7_mirnaseq_gdc_realn.bam 168793325 BAM harmonized CPTAC3 f45471c5-1cf4-4248-b242-8224d5517790 ecdd6e9b09d6bcfed39d7ef3fe5b634d {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor"} -C3L-01288.RNA-Seq.chimeric.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.chimeric.gdc_realn.bam 52246743 BAM chimeric harmonized CPTAC3 eb10902a-f88a-4fc1-9a18-c3fff7f44050 90fc93d5b9750b1bb731123cbd815384 {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor"} -C3L-01288.RNA-Seq.genomic.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.genomic.gdc_realn.bam 11319138521 BAM genomic harmonized CPTAC3 7ad9fbcb-45ab-4151-9671-7ea590408cac 3b08e91f498a195144bb81c5c27d6f86 {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor"} -C3L-01288.RNA-Seq.S6_L002_R1.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 5509930403 FASTQ S6_L002_R1 unaligned CPTAC3 f10b5dcd-3ffd-4d4c-972b-20ba92377a81 e91482cef71c9cc79b546c7c5aedc694 {"aliquot_tag": "ALQ_64916de9", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01288.RNA-Seq.S6_L002_R2.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 6071919181 FASTQ S6_L002_R2 unaligned CPTAC3 2209dd0f-5712-41c4-be2f-0ba58ab9e5fa 03f7b2df5e8c42352f5649f1be15c9e9 {"aliquot_tag": "ALQ_64916de9", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01288.RNA-Seq.transcriptome.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.transcriptome.gdc_realn.bam 13006831595 BAM transcriptome harmonized CPTAC3 1bdc5f95-392b-45c8-9187-df01d6d04291 ae626de958844d044d88859650794360 {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor"} -C3L-01288.WGS.N C3L-01288 CCRCC WGS blood_normal CPT0080100002 CPT0080100002.WholeGenome.RP-1303.bam 67692111209 BAM aligned CPTAC3 ef3d1579-93d0-4454-898e-e1e5f5be3404 da302559aa00b38746492c059389d197 {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01288.WGS.N.hg38 C3L-01288 CCRCC WGS blood_normal CPT0080100002 1e21fdd2-dd02-487f-abdb-65cb903a98a8_gdc_realn.bam 100846997469 BAM harmonized CPTAC3 96d483cc-1a1f-458b-a88f-6e118f623f95 266fdeab6895e3382c42835c9d92a1ab {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01288.WGS.T C3L-01288 CCRCC WGS tumor CPT0079230009 CPT0079230009.WholeGenome.RP-1303.bam 65734262723 BAM aligned CPTAC3 4ffd0e06-626b-47b4-9ae2-7bf50f08d41a 684f746f144eda0a6b96bbae5a87331f {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor"} -C3L-01288.WGS.T.hg38 C3L-01288 CCRCC WGS tumor CPT0079230009 2d4e2a23-1ec6-4c78-a6d2-7ad28408eaf1_gdc_realn.bam 97224628121 BAM harmonized CPTAC3 8c9e2f29-7b5b-44bd-8573-cbe28288cc8a b6fa90374085fb837bc7d9f9c01ed5f7 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor"} -C3L-01288.WXS.N C3L-01288 CCRCC WXS blood_normal CPT0080100002 CPT0080100002.WholeExome.RP-1303.bam 29128019620 BAM aligned CPTAC3 b095fe94-306d-4d74-aef1-ff2c955eb758 9ca829159ace6f205f997c44cc360fed {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01288.WXS.N.hg38 C3L-01288 CCRCC WXS blood_normal CPT0080100002 1e21fdd2-dd02-487f-abdb-65cb903a98a8_gdc_realn.bam 39908849913 BAM harmonized CPTAC3 30271039-79b2-4395-8541-6dea8620563e 29f42b0753ce70eac83b61b8b10e6107 {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-01288.WXS.T C3L-01288 CCRCC WXS tumor CPT0079230009 CPT0079230009.WholeExome.RP-1303.bam 36706443166 BAM aligned CPTAC3 199cae48-66ce-475a-8a83-8f690d2b615e 6c2cc357d248ac1df26352abf6c8ef23 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor"} -C3L-01288.WXS.T.hg38 C3L-01288 CCRCC WXS tumor CPT0079230009 2d4e2a23-1ec6-4c78-a6d2-7ad28408eaf1_gdc_realn.bam 50558535263 BAM harmonized CPTAC3 793b9e3b-e9e1-4cb9-b6d1-be313f148496 9e713a92b3b1e574dd995feca282a68c {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor"} -C3L-01291.MethArray.Green.Tbm C3L-01291 AML Methylation_Array tumor_bone_marrow CPT0099810002 202234370079_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 56e7c98e-a198-48dd-95e2-d307afe98c41 7ba9ac503d0406bb0328ff78e9ead15f {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.MethArray.Red.Tbm C3L-01291 AML Methylation_Array tumor_bone_marrow CPT0099810002 202234370079_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 16db58d2-c935-464b-9a9e-a45ebd7fc70a b19ec7798c66b91ec31fc4e97107d61c {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.miRNA-Seq.S34_L007_R1.Tbm C3L-01291 AML miRNA-Seq tumor_bone_marrow CPT0099790002 180828_UNC32-K00270_0112_AHWTLNBBXX_CAAAAG_S34_L007_R1_001.unaln.bam 164805317 BAM S34_L007_R1 unaligned CPTAC3 4941b821-201b-49fb-a6fc-84edac279fea ebf5d6066ebf62dbb887a9bb071db61d {"aliquot_tag": "ALQ_6c0b32d0", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.miRNA-Seq.Tbm.hg38 C3L-01291 AML miRNA-Seq tumor_bone_marrow CPT0099790002 27bfb728-b328-4fd1-bb28-074920b66f5b_mirnaseq_gdc_realn.bam 179499135 BAM harmonized CPTAC3 56a109fa-774d-46c1-8100-7b6d982b416d 84d1f9216bbedcebb6c50d4ed2ea4b1f {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.RNA-Seq.chimeric.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.chimeric.gdc_realn.bam 30330179 BAM chimeric harmonized CPTAC3 8ed5822a-0479-4bce-a9ea-447b77e0e912 4441efb70ab70c0c0cffb83b0c465b11 {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.RNA-Seq.genomic.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.genomic.gdc_realn.bam 10736691195 BAM genomic harmonized CPTAC3 21ac8878-d58e-42e8-b79a-1e96c125d3ef e074cc07c30a81edcdc9dd47ee771c69 {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.RNA-Seq.S15_L004_R1.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R1_001.fastq.gz 4011534935 FASTQ S15_L004_R1 unaligned CPTAC3 8b726895-9862-4f65-a913-2df01d1a57e0 78164f4784045199a0184fe99545ca24 {"aliquot_tag": "ALQ_6c0b32d0", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.RNA-Seq.S15_L004_R2.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R2_001.fastq.gz 4152938671 FASTQ S15_L004_R2 unaligned CPTAC3 64d7172a-a162-4a19-99a4-9eadddc740ed d9d9ccd15045658b0f3017d958aa1cef {"aliquot_tag": "ALQ_6c0b32d0", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.RNA-Seq.transcriptome.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.transcriptome.gdc_realn.bam 8531366846 BAM transcriptome harmonized CPTAC3 a2f98dc9-4b60-49be-b841-53481b62f315 4d29376a661b9a40352489e1c7838db2 {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.WGS.Nbc C3L-01291 AML WGS buccal_normal CPT0099850002 CPT0099850002.WholeGenome.RP-1303.bam 58351280119 BAM aligned CPTAC3 5a6b11d5-bf6f-4299-a58c-46f34444fe54 6ecf883ac6a248ea7af52306c464a262 {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01291.WGS.Nbc.hg38 C3L-01291 AML WGS buccal_normal CPT0099850002 b6a573c2-ac71-49ff-b6d8-37af02a19190_wgs_gdc_realn.bam 87081454542 BAM harmonized CPTAC3 64af057d-dddd-4424-910c-d04e4aa2254e acf20e5a59d8449a15191509c280f48e {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01291.WGS.Tbm C3L-01291 AML WGS tumor_bone_marrow CPT0099810002 CPT0099810002.WholeGenome.RP-1303.bam 61415592115 BAM aligned CPTAC3 da4a7ade-b8f0-4dbe-acfd-fb4705b4ff9e a46407a89046b399f9337cd03e41257a {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.WGS.Tbm.hg38 C3L-01291 AML WGS tumor_bone_marrow CPT0099810002 3705c530-4e59-4f9d-8670-937aea579564_wgs_gdc_realn.bam 91241409196 BAM harmonized CPTAC3 1a5442a8-1e85-42b4-912f-93073a8b589a c8bfb6c3e50202d0cde2106e70e1cbfb {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.WXS.Nbc C3L-01291 AML WXS buccal_normal CPT0099850002 CPT0099850002.WholeExome.RP-1303.bam 31781536296 BAM aligned CPTAC3 c8a6968d-e486-4975-af04-ad36908e6c94 af414d47e1bd8b311a5b2d7b20a7aa94 {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01291.WXS.Nbc.hg38 C3L-01291 AML WXS buccal_normal CPT0099850002 b6a573c2-ac71-49ff-b6d8-37af02a19190_wxs_gdc_realn.bam 43126659337 BAM harmonized CPTAC3 ce1cd257-2854-48af-b7e7-0e6abe9c0ddc 26b72c84031fd71434cdc60dd76cc65d {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01291.WXS.Tbm C3L-01291 AML WXS tumor_bone_marrow CPT0099810002 CPT0099810002.WholeExome.RP-1303.bam 50013254965 BAM aligned CPTAC3 0a70f6a2-646b-4aca-9a20-b637fe496005 89cd8d39b8783ea61e11065b1c5c1ee0 {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01291.WXS.Tbm.hg38 C3L-01291 AML WXS tumor_bone_marrow CPT0099810002 3705c530-4e59-4f9d-8670-937aea579564_wxs_gdc_realn.bam 68238529569 BAM harmonized CPTAC3 29d40427-ebf5-4487-993e-99d03f36a7d2 c0c46678fa9549b512f579f6516613d1 {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.MethArray.Green.Tbm C3L-01295 AML Methylation_Array tumor_bone_marrow CPT0099560002 203561450041_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d9145ffe-4346-41c8-8759-2a7685b303ea ed39029cf9a28bcf8eff19dd0e16d58a {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.MethArray.Red.Tbm C3L-01295 AML Methylation_Array tumor_bone_marrow CPT0099560002 203561450041_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 60b3c41f-ba1e-4e6c-8dd5-fe906a72e9c7 09db68e9359f19cba46cbc7fb2f4f84f {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.miRNA-Seq.S18_L001_R1.Tbm C3L-01295 AML miRNA-Seq tumor_bone_marrow CPT0099620002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 223961762 BAM S18_L001_R1 unaligned CPTAC3 6845511c-51d2-4798-8d85-605c81779be5 ad70d18887f8aae6fe9270a121c37119 {"aliquot_tag": "ALQ_d087d064", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.miRNA-Seq.Tbm.hg38 C3L-01295 AML miRNA-Seq tumor_bone_marrow CPT0099620002 31740841-2cf4-4c63-b232-5c92beac050e_mirnaseq_gdc_realn.bam 246973616 BAM harmonized CPTAC3 ba2e9140-1a3d-4d91-b2fa-36e18f3eed6c e0830ba2aef5c5bd1e347f6e36a4a542 {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.RNA-Seq.chimeric.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.chimeric.gdc_realn.bam 25448865 BAM chimeric harmonized CPTAC3 43cd3f1c-b5c1-4f37-bed3-d2347025c2e0 97384711a56566e36bff1ce63467edd9 {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.RNA-Seq.genomic.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.genomic.gdc_realn.bam 7236075199 BAM genomic harmonized CPTAC3 e2b99947-4d6f-4531-b351-8b943dc2a576 e8bf92b70978e9656152db713b68816f {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.RNA-Seq.S37_L006_R1.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R1_001.fastq.gz 3345270077 FASTQ S37_L006_R1 unaligned CPTAC3 316b0d56-7a4e-4eea-967f-5f9121bcc64e a6050176a86af92bedf2fe46c11d0d40 {"aliquot_tag": "ALQ_d087d064", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.RNA-Seq.S37_L006_R2.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R2_001.fastq.gz 3949844136 FASTQ S37_L006_R2 unaligned CPTAC3 afdc6d9d-0099-4f29-8952-6be3a1bc0bbb 66c3990a6d1c039d6ab528a117241f8f {"aliquot_tag": "ALQ_d087d064", "sample": "S37", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.RNA-Seq.transcriptome.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.transcriptome.gdc_realn.bam 9797479170 BAM transcriptome harmonized CPTAC3 4cbf7064-6ceb-4594-8882-1ed2616518fc 84d7a548c5537492b6a65a03c7f42be0 {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.WGS.Nbc C3L-01295 AML WGS buccal_normal CPT0099640002 CPT0099640002.WholeGenome.RP-1303.bam 76761225904 BAM aligned CPTAC3 3bddb539-0a22-4d55-9a18-6c66904ab784 1cb0305de7784767c8970f1590c261fe {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01295.WGS.Nbc.hg38 C3L-01295 AML WGS buccal_normal CPT0099640002 d594d3a4-c362-45a5-9283-92b99a78469d_wgs_gdc_realn.bam 109628472544 BAM harmonized CPTAC3 c224d7f9-818d-4419-bfcc-ba20830a688d 7f4d5e8387cdcf37d720b9d7697d8a60 {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002_1 CPT0099560002_1.WholeGenome.RP-1303.bam 68763622262 BAM aligned CPTAC3 078f15a6-9fab-4bb8-9138-0e57a1759319 31554b889b5d9f6db6d8dc43edf9eb87 {"aliquot_tag": "ALQ_d0a6dc5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 CPT0099560002.WholeGenome.RP-1303.bam 23922175268 BAM aligned CPTAC3 a049a44a-1bf7-4741-bc21-66ace36d90a6 be7f66ebb2ca2193bc197fcebbe7a969 {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.WGS.Tbm.hg38 C3L-01295 AML WGS tumor_bone_marrow CPT0099560002_1 3205a569-ab23-4c2e-9e2f-1a47c4450295_wgs_gdc_realn.bam 99827023129 BAM harmonized CPTAC3 89be8230-404f-41ec-8b81-c223f12201bd 1934411b7a3ea1c44764c0a3b4baa616 {"aliquot_tag": "ALQ_d0a6dc5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.WGS.Tbm.hg38 C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 fc805067-c5dc-4e24-85cc-f584a58b2728_wgs_gdc_realn.bam 34126293284 BAM harmonized CPTAC3 5d51ea11-528e-49dc-8ffd-d1b6f4d15a59 e165039de7a40b065eee395a87321bdb {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.WXS.Nbc C3L-01295 AML WXS buccal_normal CPT0099640002 CPT0099640002.WholeExome.RP-1303.bam 22563264860 BAM aligned CPTAC3 2c75c437-a748-4e8d-a82a-900eec51eaf3 b1a2289886dd037e8573b9e3b2d510b2 {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01295.WXS.Nbc.hg38 C3L-01295 AML WXS buccal_normal CPT0099640002 d594d3a4-c362-45a5-9283-92b99a78469d_wxs_gdc_realn.bam 32074188187 BAM harmonized CPTAC3 c0286d1a-54de-4aa6-a763-290c5d4d7436 23b1f0fe6698e6280e7a1a7ca5a49b91 {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01295.WXS.Tbm C3L-01295 AML WXS tumor_bone_marrow CPT0099560002 CPT0099560002.WholeExome.RP-1303.bam 23922175342 BAM aligned CPTAC3 66c7f637-442c-4825-9596-fb054bf01e2e 953adbe6cbbd02bad0fe404a477483ad {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01295.WXS.Tbm.hg38 C3L-01295 AML WXS tumor_bone_marrow CPT0099560002 fc805067-c5dc-4e24-85cc-f584a58b2728_wxs_gdc_realn.bam 34518957797 BAM harmonized CPTAC3 9b4a0fda-6245-4696-95e2-236053b5f6d9 f20a56aca0e8e01aba1c4238f82411fb {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.MethArray.Green.Tbm C3L-01296 AML Methylation_Array tumor_bone_marrow CPT0099700002 202234360028_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2fb014e2-fd77-4dde-a8ab-b55543574b7a d553fcabdff70f7f1e19b37d91dd68e0 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.MethArray.Red.Tbm C3L-01296 AML Methylation_Array tumor_bone_marrow CPT0099700002 202234360028_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 2ebb1b1c-a115-49e2-a32c-2f408ec94d59 4b7b84a516695178752030d59e6b1745 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.miRNA-Seq.S33_L007_R1.Tbm C3L-01296 AML miRNA-Seq tumor_bone_marrow CPT0099680002 180828_UNC32-K00270_0112_AHWTLNBBXX_ATTCCT_S33_L007_R1_001.unaln.bam 204384371 BAM S33_L007_R1 unaligned CPTAC3 eff0d314-1628-4c18-8ce1-5a906e53f873 c4f55634747facfb312f4a1ff2983a5a {"aliquot_tag": "ALQ_9a37c8c5", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.miRNA-Seq.Tbm.hg38 C3L-01296 AML miRNA-Seq tumor_bone_marrow CPT0099680002 6e25f2a9-6a91-4373-86b5-39d92dd56b92_mirnaseq_gdc_realn.bam 228160966 BAM harmonized CPTAC3 e44a077d-e7dc-4b58-8428-bb1ea794037e 6bebc987d14515be12132c678b49f94a {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.RNA-Seq.chimeric.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.chimeric.gdc_realn.bam 40155333 BAM chimeric harmonized CPTAC3 71816ce7-6d4e-476a-aab8-7fd0776b22dc 9c2a01d1ae24bb10c55c135f0b91b329 {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.RNA-Seq.genomic.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.genomic.gdc_realn.bam 9528587497 BAM genomic harmonized CPTAC3 bb82b0d7-38cf-4f81-9436-ec1edb2857be ae3dd1f3ac93d1ab677d628b6468c276 {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.RNA-Seq.S12_L004_R1.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R1_001.fastq.gz 4352150797 FASTQ S12_L004_R1 unaligned CPTAC3 3dc35af9-cc1a-4e33-9653-245460e0ff17 6f12fb2f8e62b2d2dc1210163ae6cbd8 {"aliquot_tag": "ALQ_9a37c8c5", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.RNA-Seq.S12_L004_R2.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R2_001.fastq.gz 4602841642 FASTQ S12_L004_R2 unaligned CPTAC3 bf7675cf-0611-47f4-a8b5-ac33d7823daf 86b66306b85d3886b53892c6a246129b {"aliquot_tag": "ALQ_9a37c8c5", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.RNA-Seq.transcriptome.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.transcriptome.gdc_realn.bam 8312413627 BAM transcriptome harmonized CPTAC3 d18a211d-5533-4dbc-b651-9b2b1bfc8a99 aa57f377ef2d05e27f797dc4d1598fe0 {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.WGS.Nbc C3L-01296 AML WGS buccal_normal CPT0099710002 CPT0099710002.WholeGenome.RP-1303.bam 64723290652 BAM aligned CPTAC3 ec32edcd-460e-45e1-8f04-a73377524120 605fa54479b288add03bb07bf4f87ddc {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01296.WGS.Nbc.hg38 C3L-01296 AML WGS buccal_normal CPT0099710002 31ff8266-efb4-40b9-a2a8-4ada70d0214b_wgs_gdc_realn.bam 101000745877 BAM harmonized CPTAC3 6119f941-dd13-4396-b18f-fcd7301ec242 52c846a6e87ddb67d6e73c34a3ace011 {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01296.WGS.Tbm C3L-01296 AML WGS tumor_bone_marrow CPT0099700002 CPT0099700002.WholeGenome.RP-1303.bam 60635436675 BAM aligned CPTAC3 bac22b68-25d3-42d5-bd60-97133cca97cd f2c15786da68d8879159fb10dc35a028 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.WGS.Tbm.hg38 C3L-01296 AML WGS tumor_bone_marrow CPT0099700002 163018aa-1ddb-491b-aee7-e7c8e3404e02_wgs_gdc_realn.bam 89908601730 BAM harmonized CPTAC3 2f18abf7-fc76-485c-ae37-838137ae7ab1 12f65982f14d452d1c091aa6eb4c2cdd {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.WXS.Nbc C3L-01296 AML WXS buccal_normal CPT0099710002 CPT0099710002.WholeExome.RP-1303.bam 38668913230 BAM aligned CPTAC3 7c88daf5-a0f5-4016-bc0b-8a6ca67a6477 9f1829106b9349f714a635361da4f2b5 {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01296.WXS.Nbc.hg38 C3L-01296 AML WXS buccal_normal CPT0099710002 31ff8266-efb4-40b9-a2a8-4ada70d0214b_wxs_gdc_realn.bam 52304144298 BAM harmonized CPTAC3 59dbd329-6f4d-4083-a95a-7fda90c46df9 412bd4bb5ee003ce383b452ba8e00ad2 {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01296.WXS.Tbm C3L-01296 AML WXS tumor_bone_marrow CPT0099700002 CPT0099700002.WholeExome.RP-1303.bam 38263904488 BAM aligned CPTAC3 656f9f4c-8cc6-4563-9754-0ca0b8a3ca1e 0633633aa725405f8be4892d5f4117f7 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01296.WXS.Tbm.hg38 C3L-01296 AML WXS tumor_bone_marrow CPT0099700002 163018aa-1ddb-491b-aee7-e7c8e3404e02_wxs_gdc_realn.bam 52523286014 BAM harmonized CPTAC3 95be4e99-82b0-4a37-b764-9403df736448 5026781b49efbc31c4ff9ced3e17bb28 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01302.MethArray.Green.A C3L-01302 CCRCC Methylation_Array tissue_normal CPT0063640009 204930640083_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9d43a624-14c4-4f7b-8afa-179cd4815474 bec2395d08eee9953de723869655e407 {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.MethArray.Green.T C3L-01302 CCRCC Methylation_Array tumor CPT0063630006 202184900140_R08C01_Grn.idat 13676261 IDAT Green NA CPTAC3 358ac1f3-c2f6-4238-9936-ce3af059d439 a5aba19ac192df60a04840c447c74e13 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor"} -C3L-01302.MethArray.Red.A C3L-01302 CCRCC Methylation_Array tissue_normal CPT0063640009 204930640083_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 23436783-c5d7-47fb-808a-57d4d338f14e f0a212a42006bc1a4e5a7ede3c88566a {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.MethArray.Red.T C3L-01302 CCRCC Methylation_Array tumor CPT0063630006 202184900140_R08C01_Red.idat 13676261 IDAT Red NA CPTAC3 7ab0866e-1690-47f9-9b29-d460b5965c3f f724e972e8f9b6905efd23d63b08e02d {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor"} -C3L-01302.miRNA-Seq.A.hg38 C3L-01302 CCRCC miRNA-Seq tissue_normal CPT0063640006 37239aec-6d6a-45c5-8346-d6c96f5f9fad_mirnaseq_gdc_realn.bam 217023543 BAM harmonized CPTAC3 3b262e48-353f-4662-9568-d0a103c63655 0582eee2b0f5c12d96b368bb8f29edcc {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.miRNA-Seq.S13_L003_R1.T C3L-01302 CCRCC miRNA-Seq tumor CPT0063630008 181113_UNC31-K00269_0164_AH23NNBBXY_CGGAAT_S13_L003_R1_001.unaln.bam 245071630 BAM S13_L003_R1 unaligned CPTAC3 e6651836-5233-4bb7-9b9f-eb5df7e25347 15c1286b8d0140c3bc0c5b1462d3dd9e {"aliquot_tag": "ALQ_70625d28", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01302.miRNA-Seq.S47_L004_R1.A C3L-01302 CCRCC miRNA-Seq tissue_normal CPT0063640006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGAAG_S47_L004_R1_001.unaln.bam 192691031 BAM S47_L004_R1 unaligned CPTAC3 7855e183-5531-4958-a275-231672fbadc0 ff8c356cba5e7d418bedfee9f36e5574 {"aliquot_tag": "ALQ_25faac3f", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.miRNA-Seq.T.hg38 C3L-01302 CCRCC miRNA-Seq tumor CPT0063630008 429a0241-f773-4042-aaac-fc43c77e9446_mirnaseq_gdc_realn.bam 273796446 BAM harmonized CPTAC3 fce57a82-222a-46ed-9bd8-8b28253d54a4 54abbbb03bf050b1acc085e76c91e152 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor"} -C3L-01302.RNA-Seq.chimeric.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.chimeric.gdc_realn.bam 82615566 BAM chimeric harmonized CPTAC3 2fed6653-4f54-4e23-ae92-d8249a05d549 dc781a131b487f2144ad24dd20e3ae1e {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.RNA-Seq.chimeric.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.chimeric.gdc_realn.bam 39680750 BAM chimeric harmonized CPTAC3 c2060b0e-83bb-4c85-abfb-60c9a4dae55c 5b3a39686144d4a4ee6364008f1f4027 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor"} -C3L-01302.RNA-Seq.genomic.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.genomic.gdc_realn.bam 9505579073 BAM genomic harmonized CPTAC3 77648444-c206-4e88-b6ea-674bff67941c 01001e015783cb902f6a334db05fce6e {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.RNA-Seq.genomic.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.genomic.gdc_realn.bam 8999034324 BAM genomic harmonized CPTAC3 f7bc271f-d936-4e7c-bdd3-995b0a951957 82c8165a32aa31bd4b73a74f5ecbcac8 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor"} -C3L-01302.RNA-Seq.S18_L005_R1.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R1_001.fastq.gz 4463196137 FASTQ S18_L005_R1 unaligned CPTAC3 1557a8aa-c6e9-4a10-8481-ef3e858bacc1 ca3906a4679aab622ef17bb0da32aae9 {"aliquot_tag": "ALQ_70625d28", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01302.RNA-Seq.S18_L005_R2.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R2_001.fastq.gz 4786222120 FASTQ S18_L005_R2 unaligned CPTAC3 061c0b4a-2f52-49b7-8d34-fa4960c9bead 660f996c7f83a0024a95cd8ec5b399ab {"aliquot_tag": "ALQ_70625d28", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01302.RNA-Seq.S23_L008_R1.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R1_001.fastq.gz 4760766335 FASTQ S23_L008_R1 unaligned CPTAC3 fdb44060-23a7-4e59-a702-a5283b8bee2d 834a24370ebae93d0a53955b20efd25e {"aliquot_tag": "ALQ_25faac3f", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.RNA-Seq.S23_L008_R2.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R2_001.fastq.gz 5222034489 FASTQ S23_L008_R2 unaligned CPTAC3 b22a8f99-90ba-40b6-9a43-dad2607758d8 d9958fc21931bcfc6164dcd664f9bcb8 {"aliquot_tag": "ALQ_25faac3f", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.RNA-Seq.transcriptome.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.transcriptome.gdc_realn.bam 12684334705 BAM transcriptome harmonized CPTAC3 61078b84-26b0-4e00-9bc8-615df09c55c2 a45ab195a452f763f567b7f3184901fe {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.RNA-Seq.transcriptome.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.transcriptome.gdc_realn.bam 11594598277 BAM transcriptome harmonized CPTAC3 607104a6-3b49-465c-b64e-b726ebac44c7 3878f1e80c1f1f9bbe815aa5748a1315 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor"} -C3L-01302.WGS.A C3L-01302 CCRCC WGS tissue_normal CPT0063640009 CPT0063640009.WholeGenome.RP-1303.bam 54531714605 BAM aligned CPTAC3 fce2654f-cc83-45fe-bbe4-88b9575e364d cdfd9b532ecf6085bdbb2e13fcad6f1b {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.WGS.A.hg38 C3L-01302 CCRCC WGS tissue_normal CPT0063640009 bddf8de7-d36e-4ca2-bb9e-a120a6626a4d_wgs_gdc_realn.bam 79407212649 BAM harmonized CPTAC3 9a44d465-5c23-467d-aab9-b511c28f5946 2909a643221fbb4a18aa4053facf762c {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.WGS.N C3L-01302 CCRCC WGS blood_normal CPT0065290002 CPT0065290002.WholeGenome.RP-1303.bam 72151680228 BAM aligned CPTAC3 525102e5-40da-477a-83e7-7a1003b62d0a 477726db84d5b4486776f247d9072836 {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01302.WGS.N.hg38 C3L-01302 CCRCC WGS blood_normal CPT0065290002 5574f004-37c9-4009-826f-ed228d1cdf46_gdc_realn.bam 108660008377 BAM harmonized CPTAC3 f692e57d-ea3f-4774-b5ab-659e80fd1158 9d95c7a7611e5e4540d5417444eab2a8 {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01302.WGS.T C3L-01302 CCRCC WGS tumor CPT0063630006 CPT0063630006.WholeGenome.RP-1303.bam 71570929239 BAM aligned CPTAC3 31653ed4-9db1-4026-b25f-cd6e2a583fff aab58e6ff77642f63dd7191f291928e9 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor"} -C3L-01302.WGS.T.hg38 C3L-01302 CCRCC WGS tumor CPT0063630006 d38dd99a-b263-46fa-a4e7-c98a1e795486_gdc_realn.bam 110086960509 BAM harmonized CPTAC3 d3ab66da-9f01-46c2-8219-22706f867ad2 586e8a9299a74d3667149e20e1c13c48 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor"} -C3L-01302.WXS.A C3L-01302 CCRCC WXS tissue_normal CPT0063640009 CPT0063640009.WholeExome.RP-1303.bam 33454183168 BAM aligned CPTAC3 8d2149fe-77ed-40e0-af94-256b516602bd 41aafe4176e286827ba617934c937646 {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.WXS.A.hg38 C3L-01302 CCRCC WXS tissue_normal CPT0063640009 bddf8de7-d36e-4ca2-bb9e-a120a6626a4d_wxs_gdc_realn.bam 45720867099 BAM harmonized CPTAC3 2824de9a-b455-4718-a372-62716a0e949f 8abdac87d061a4c37ab42d1d7beb7b92 {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01302.WXS.N C3L-01302 CCRCC WXS blood_normal CPT0065290002 CPT0065290002.WholeExome.RP-1303.bam 27393249999 BAM aligned CPTAC3 f5fed662-c35b-4503-ac76-88facbe769d6 ab1140c58b724a3a778c99dc4bccee10 {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01302.WXS.N.hg38 C3L-01302 CCRCC WXS blood_normal CPT0065290002 5574f004-37c9-4009-826f-ed228d1cdf46_gdc_realn.bam 36976231244 BAM harmonized CPTAC3 12676e7d-1514-4931-8e91-855e1cc3169d 4ff10c1c8476bdcad18b5dba6cf9a1ae {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01302.WXS.T C3L-01302 CCRCC WXS tumor CPT0063630006 CPT0063630006.WholeExome.RP-1303.bam 28702584205 BAM aligned CPTAC3 da44fd61-c27e-4453-a7c6-dc3111cbb434 0a570215036d351096761136041760c7 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor"} -C3L-01302.WXS.T.hg38 C3L-01302 CCRCC WXS tumor CPT0063630006 d38dd99a-b263-46fa-a4e7-c98a1e795486_gdc_realn.bam 38571518807 BAM harmonized CPTAC3 d891cd39-a2a4-4c81-b8db-35da9d0188f3 c57ea97d26a540a94424dc1c6c3fa0b9 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor"} -C3L-01304.MethArray.Green.T C3L-01304 UCEC Methylation_Array tumor CPT0064210006 202176290145_R07C01_Grn.idat 13676225 IDAT Green NA CPTAC3 708a1828-e677-4e09-b0e5-920bdc9397fd 5f24936a53daf8bf20da61c0f9da7b41 {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor"} -C3L-01304.MethArray.Red.T C3L-01304 UCEC Methylation_Array tumor CPT0064210006 202176290145_R07C01_Red.idat 13676225 IDAT Red NA CPTAC3 ef84bc18-6452-472c-bc14-44eeec0ea02b 37346d9c4cac51baf7dfd6da48c086fa {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor"} -C3L-01304.miRNA-Seq.A.hg38 C3L-01304 UCEC miRNA-Seq tissue_normal CPT0064240006 b482bb54-1a6a-4b1d-be90-b6e1cf2f2e8a_mirnaseq_gdc_realn.bam 340105062 BAM harmonized CPTAC3 7cc7083e-64f0-464a-9266-f5a2d3dc4acc 7fbd9556787a123a224667ae0eb9c647 {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.miRNA-Seq.S7_L006_R1.A C3L-01304 UCEC miRNA-Seq tissue_normal CPT0064240006 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L006_R1_001.unaln.bam 306760222 BAM S7_L006_R1 unaligned CPTAC3 3d7de543-bc0e-47a0-b17c-210a719f47d7 2375e815b98d06b1c6de424fcb761de3 {"aliquot_tag": "ALQ_7bccd0a7", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.miRNA-Seq.S9_L003_R1.T C3L-01304 UCEC miRNA-Seq tumor CPT0064210009 181113_UNC31-K00269_0164_AH23NNBBXY_CAGGCG_S9_L003_R1_001.unaln.bam 192983593 BAM S9_L003_R1 unaligned CPTAC3 e3e8d63f-89a8-4ee8-964c-03f9d5c6d5da cde149e92e8f4b08e38716bb99fd6442 {"aliquot_tag": "ALQ_23934246", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01304.miRNA-Seq.T.hg38 C3L-01304 UCEC miRNA-Seq tumor CPT0064210009 fa1301f4-557f-43d5-ad43-cbc52228f68b_mirnaseq_gdc_realn.bam 209807970 BAM harmonized CPTAC3 5d052749-1297-4a7a-a28d-e3b18fb87b8d 05c5737f7ddc990a003deecb5e266e5e {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.chimeric.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.chimeric.gdc_realn.bam 145502872 BAM chimeric harmonized CPTAC3 b36c9cda-1b7e-4de7-92a2-9173e8ae708d cb09ced6c80f9bafe939fd13846a95c8 {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.RNA-Seq.chimeric.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.chimeric.gdc_realn.bam 30617955 BAM chimeric harmonized CPTAC3 f34b20e4-c978-450b-b3b6-199776dfafd9 366841fb7e13eaa119021c0519eea234 {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.chimeric.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.chimeric.gdc_realn.bam 272050564 BAM chimeric harmonized CPTAC3 4533f48f-e2f4-4050-9487-c09395b09b55 9929050f29c6718c4f9716f22ba86550 {"aliquot_tag": "ALQ_5e4c3c1a", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.genomic.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.genomic.gdc_realn.bam 9176137857 BAM genomic harmonized CPTAC3 bbe94b72-3cbc-4549-b696-917a0afd89af 134e951fce1976b6c1659d5aa00f12cd {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.RNA-Seq.genomic.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.genomic.gdc_realn.bam 8171274027 BAM genomic harmonized CPTAC3 7bf4aa8f-916b-4b5f-af38-184d26a65a51 2ae306d9ac1b245d64755969f2ddfc8a {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.genomic.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.genomic.gdc_realn.bam 13040293482 BAM genomic harmonized CPTAC3 4dde8489-0320-4f59-bc10-6f43ae92d581 8193132728d370a442a55b3800c09f1b {"aliquot_tag": "ALQ_5e4c3c1a", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.S21_L006_R1.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R1_001.fastq.gz 3796845587 FASTQ S21_L006_R1 unaligned CPTAC3 2c0d1a81-0278-4dcf-99b1-8b846369e7a2 6f2201edc2b985abf0157fc34fb77f4c {"aliquot_tag": "ALQ_23934246", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.S21_L006_R2.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R2_001.fastq.gz 4071894153 FASTQ S21_L006_R2 unaligned CPTAC3 06f5c317-1033-4c7a-b439-095b129762d6 44043ee45cc72e68674581e5dadda24b {"aliquot_tag": "ALQ_23934246", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.S38_R1.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R1_001.fastq.gz 7713671923 FASTQ S38_R1 unaligned CPTAC3 c114febc-6ef4-4c4a-8058-afef0e30d834 38eab746c7cc22283e75c50f40c6e1a8 {"aliquot_tag": "ALQ_5e4c3c1a", "sample": "S38", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.S38_R2.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R2_001.fastq.gz 7866103332 FASTQ S38_R2 unaligned CPTAC3 e40e052c-bd9e-4551-8c7f-f0437c260e39 eb281d5c100ea9d34d4e279d2c196008 {"aliquot_tag": "ALQ_5e4c3c1a", "sample": "S38", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.S3_L001_R1.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R1_001.fastq.gz 4128559320 FASTQ S3_L001_R1 unaligned CPTAC3 fb12c9f3-e9e4-4234-b1ea-b652ea9e064d 1262f3df654e8927fa130cf296bddb36 {"aliquot_tag": "ALQ_7bccd0a7", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.RNA-Seq.S3_L001_R2.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R2_001.fastq.gz 4712930558 FASTQ S3_L001_R2 unaligned CPTAC3 9272b657-6b27-4628-adff-898271064f68 549196aad6f244bb99468d4b500d5068 {"aliquot_tag": "ALQ_7bccd0a7", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.RNA-Seq.transcriptome.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.transcriptome.gdc_realn.bam 10477901118 BAM transcriptome harmonized CPTAC3 fab9f52f-f2e6-438c-83b5-b4c76fef7fc9 2947cfa832c90c2b99277892b2a62bb0 {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.RNA-Seq.transcriptome.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.transcriptome.gdc_realn.bam 8746992454 BAM transcriptome harmonized CPTAC3 a00e97b8-eb7c-459a-9f3d-12f951ac2d29 b1b30244beca54b8e145d0831051c397 {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor"} -C3L-01304.RNA-Seq.transcriptome.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.transcriptome.gdc_realn.bam 6270689646 BAM transcriptome harmonized CPTAC3 9fc830a3-969d-4fae-8ffe-184b2450750d 0ec57a02f6af2e88487b4ebaae5398c2 {"aliquot_tag": "ALQ_5e4c3c1a", "gdc_sample_type": "Primary Tumor"} -C3L-01304.WGS.A C3L-01304 UCEC WGS tissue_normal CPT0064240009 CPT0064240009.WholeGenome.RP-1303.bam 51306084781 BAM aligned CPTAC3 dfd2667d-e4b4-4fe6-9cc4-39e87e65637a 827473cfd79b4d88b7697968f10ca7fe {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.WGS.A.hg38 C3L-01304 UCEC WGS tissue_normal CPT0064240009 fd423c83-6aaf-431a-8d73-d73f358928cb_wgs_gdc_realn.bam 77117474013 BAM harmonized CPTAC3 6c3358e5-f144-4dff-af39-440329b2eec6 3e5f0b3b2b45944f94802bad013512c3 {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.WGS.N C3L-01304 UCEC WGS blood_normal CPT0065400002 CPT0065400002.WholeGenome.RP-1303.bam 72928606541 BAM aligned CPTAC3 48de75d2-2757-494f-8280-98b81e98b4f9 39c2fb2f423443959f268084b31e0075 {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01304.WGS.N.hg38 C3L-01304 UCEC WGS blood_normal CPT0065400002 3f01a5d9-4b5b-4aa5-a6db-3d2786936bde_gdc_realn.bam 113321539042 BAM harmonized CPTAC3 105d699b-2118-4678-8fe5-c056e33b374b 650c4d37287f0365bb861be99fb4d16b {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01304.WGS.T C3L-01304 UCEC WGS tumor CPT0064210006 CPT0064210006.WholeGenome.RP-1303.bam 78924246395 BAM aligned CPTAC3 e4418310-9a6f-4e01-a655-08cc87058882 5922adda7fc758169f892cd7443dbd3d {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor"} -C3L-01304.WGS.T.hg38 C3L-01304 UCEC WGS tumor CPT0064210006 3866d5e5-efed-427b-bc34-b5a9bb070eb6_gdc_realn.bam 122310009125 BAM harmonized CPTAC3 f61a20f0-253a-4b03-822e-17e43cd61cd4 2d56c21133828083a1d79e0c08572ec6 {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor"} -C3L-01304.WXS.A C3L-01304 UCEC WXS tissue_normal CPT0064240009 CPT0064240009.WholeExome.RP-1303.bam 35372706891 BAM aligned CPTAC3 361452bc-480a-463c-bd99-832657c2b91a 5094cd8d05108df6ca31d03474783f1e {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.WXS.A.hg38 C3L-01304 UCEC WXS tissue_normal CPT0064240009 fd423c83-6aaf-431a-8d73-d73f358928cb_wxs_gdc_realn.bam 47352439152 BAM harmonized CPTAC3 dc2f1cf3-0ad4-4dae-ae77-b9569121bd12 19a00cb59ed6fb4fe5a74f178377abae {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01304.WXS.N C3L-01304 UCEC WXS blood_normal CPT0065400002 CPT0065400002.WholeExome.RP-1303.bam 29499082808 BAM aligned CPTAC3 b490469f-6983-4d55-b6f8-b884587b3bfc 3307ef8978f2ddaf18ad63ee95a2eff3 {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01304.WXS.N.hg38 C3L-01304 UCEC WXS blood_normal CPT0065400002 3f01a5d9-4b5b-4aa5-a6db-3d2786936bde_gdc_realn.bam 39556371465 BAM harmonized CPTAC3 abdfac63-1c07-4f0b-878b-e230e90fa27a 91295a24b2b704f72dd33472bf199e47 {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01304.WXS.T C3L-01304 UCEC WXS tumor CPT0064210006 CPT0064210006.WholeExome.RP-1303.bam 33181523891 BAM aligned CPTAC3 16007f80-3a3a-47cd-95c6-eb725c6db78c 4120686667e7bb1840c8be04eebf9e5e {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor"} -C3L-01304.WXS.T.hg38 C3L-01304 UCEC WXS tumor CPT0064210006 3866d5e5-efed-427b-bc34-b5a9bb070eb6_gdc_realn.bam 45757606642 BAM harmonized CPTAC3 3df8fea4-d4ec-484d-a89c-33fe123dedc8 45fa5d4416358182aa7ca7ffdd8beaa3 {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor"} -C3L-01307.MethArray.Green.T C3L-01307 UCEC Methylation_Array tumor CPT0064290007 202184990013_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 07134e7a-cede-4844-84ac-4f3d165fdb6d fcda67c64fbbb83753bdf45484025694 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor"} -C3L-01307.MethArray.Red.T C3L-01307 UCEC Methylation_Array tumor CPT0064290007 202184990013_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6ff9d82e-49c7-44e7-9ebf-440c5a58c981 2e19176e11e60cca2dc00ce4140c8cd7 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor"} -C3L-01307.miRNA-Seq.A.hg38 C3L-01307 UCEC miRNA-Seq tissue_normal CPT0064320006 e21af149-a3f3-47d8-88d4-91e9fb64a536_mirnaseq_gdc_realn.bam 261314566 BAM harmonized CPTAC3 e20d3d35-ea3e-4d27-a0af-003822cb3fa2 46b1ef4a68dca5516781e655657563e3 {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.miRNA-Seq.S6_L005_R1.T C3L-01307 UCEC miRNA-Seq tumor CPT0064290010 181119_UNC31-K00269_0165_AH27WCBBXY_CACCGG_S6_L005_R1_001.unaln.bam 242466279 BAM S6_L005_R1 unaligned CPTAC3 a4c2f102-fa71-4db8-84a5-00f605e56ab2 fbaaa9c5716979e11bbead5e9a738e03 {"aliquot_tag": "ALQ_73248062", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01307.miRNA-Seq.S8_L006_R1.A C3L-01307 UCEC miRNA-Seq tissue_normal CPT0064320006 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L006_R1_001.unaln.bam 223927271 BAM S8_L006_R1 unaligned CPTAC3 594643fb-9194-4465-b0d8-aa705d3dcf79 6794f6dfb1f550e3eea31c9274557917 {"aliquot_tag": "ALQ_3fd0f6a2", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.miRNA-Seq.T.hg38 C3L-01307 UCEC miRNA-Seq tumor CPT0064290010 ea57121d-52ad-4d55-9c0a-58036fc976dc_mirnaseq_gdc_realn.bam 263452475 BAM harmonized CPTAC3 37468c3c-69bd-45e0-9ca1-e6c8bce709df acce7c00e625252b6e4f1c0697c0e8da {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.chimeric.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.chimeric.gdc_realn.bam 51068073 BAM chimeric harmonized CPTAC3 606d940b-1b19-401f-ab37-61288b7ae517 44b63231c069221a87c2a7df33bd14bd {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.RNA-Seq.chimeric.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.chimeric.gdc_realn.bam 25818318 BAM chimeric harmonized CPTAC3 28cb6cd2-4790-4359-9974-133894caa5b5 ffedcf31a2a041121b3637b3834ec609 {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.chimeric.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.chimeric.gdc_realn.bam 251487502 BAM chimeric harmonized CPTAC3 aa78218b-dd01-41ef-aea0-f00ea39387b2 35fa90dd5f6f0230296489176e0a3d18 {"aliquot_tag": "ALQ_a6dcf8ab", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.genomic.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.genomic.gdc_realn.bam 7629721973 BAM genomic harmonized CPTAC3 96239e4f-6e09-4866-8194-eab8bc3e3a50 d9e99b0b97485db31002e36b8e1af71b {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.RNA-Seq.genomic.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.genomic.gdc_realn.bam 8504785377 BAM genomic harmonized CPTAC3 4accf41b-0a00-45b2-b55b-bf1bd045c4f3 10989975e146f21cce9f553f2297958e {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.genomic.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.genomic.gdc_realn.bam 12715573127 BAM genomic harmonized CPTAC3 adc68649-9239-4234-a4b7-5cb87ed40680 03a846b05f576d305f8dcd2542614061 {"aliquot_tag": "ALQ_a6dcf8ab", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.S23_L006_R1.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 3544549729 FASTQ S23_L006_R1 unaligned CPTAC3 7eae300f-fe7f-4059-876c-659d575a8f34 d9083db11e8d95ed29853119c2840627 {"aliquot_tag": "ALQ_73248062", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.S23_L006_R2.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 3814839038 FASTQ S23_L006_R2 unaligned CPTAC3 9ad113e3-3bed-4906-a9d0-adc6e81379b4 1165c13796ba9c5c61101ec5a399f029 {"aliquot_tag": "ALQ_73248062", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.S2_L001_R1.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R1_001.fastq.gz 3555781101 FASTQ S2_L001_R1 unaligned CPTAC3 636ef258-acbd-443f-99c4-8966ebf303af 56a95f391518662af36b081d90da9b64 {"aliquot_tag": "ALQ_3fd0f6a2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.RNA-Seq.S2_L001_R2.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R2_001.fastq.gz 4035262942 FASTQ S2_L001_R2 unaligned CPTAC3 8b68efdb-23b2-4936-8426-1d26933f64a5 926db222d273df86768252ab576ec3de {"aliquot_tag": "ALQ_3fd0f6a2", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.RNA-Seq.S6_R1.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R1_001.fastq.gz 7130401343 FASTQ S6_R1 unaligned CPTAC3 12e75f64-1024-486b-a2f2-c5ac91f686a9 0aadaab03bdcfa6e190b3b2e14e258c7 {"aliquot_tag": "ALQ_a6dcf8ab", "sample": "S6", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.S6_R2.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R2_001.fastq.gz 7271813472 FASTQ S6_R2 unaligned CPTAC3 4c195d07-8889-4931-8640-43d82b4a8980 f9ed4fec112123140fdff1d1ad1ab8bc {"aliquot_tag": "ALQ_a6dcf8ab", "sample": "S6", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.transcriptome.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.transcriptome.gdc_realn.bam 9810130636 BAM transcriptome harmonized CPTAC3 40cb9726-0b5d-4e15-96ca-40cd38f2eb7f 5cfed833d07790c09ac9714d6459de85 {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.RNA-Seq.transcriptome.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.transcriptome.gdc_realn.bam 8420796920 BAM transcriptome harmonized CPTAC3 a0a87df8-f7a9-4750-8bb0-97a63d55e5c3 3ed38774a505a86fae85e4031aaf5e79 {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor"} -C3L-01307.RNA-Seq.transcriptome.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.transcriptome.gdc_realn.bam 6556240377 BAM transcriptome harmonized CPTAC3 206703f0-488e-4a8a-9d48-c902f9ec3989 a100f7ae1835e4c68847dd0080c40768 {"aliquot_tag": "ALQ_a6dcf8ab", "gdc_sample_type": "Primary Tumor"} -C3L-01307.WGS.A C3L-01307 UCEC WGS tissue_normal CPT0064320009 CPT0064320009.WholeGenome.RP-1303.bam 68419765531 BAM aligned CPTAC3 79d6ad3c-2b59-462f-9757-5fa72f1c582c f571d62c265f86101014c297e4ea1a37 {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.WGS.A.hg38 C3L-01307 UCEC WGS tissue_normal CPT0064320009 31bfb1b0-4534-4f58-ad1c-77ca6cd3ffbe_wgs_gdc_realn.bam 99278989048 BAM harmonized CPTAC3 414b2b53-2c2a-4fac-8822-d56bf42d8914 b6d194349edcde0027432c9aaa76581a {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.WGS.N C3L-01307 UCEC WGS blood_normal CPT0065410002 CPT0065410002.WholeGenome.RP-1303.bam 82558697786 BAM aligned CPTAC3 11093004-4cec-48c3-9144-c14118e21192 66868665750d62465bf00abb7ec1c7d8 {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal"} -C3L-01307.WGS.N.hg38 C3L-01307 UCEC WGS blood_normal CPT0065410002 40844e74-4b1b-46ff-a4ea-d8f743dce828_gdc_realn.bam 129569422027 BAM harmonized CPTAC3 ac906496-2d2a-4621-b8f6-c4ee338878d8 e4df34036860890f16b1c1fc19469f24 {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal"} -C3L-01307.WGS.T C3L-01307 UCEC WGS tumor CPT0064290007 CPT0064290007.WholeGenome.RP-1303.bam 85876861238 BAM aligned CPTAC3 19cdb27b-ae67-4bd7-9d28-e350b5d1f7c4 6e2269244a4c7adf00dd86a0ae2d2997 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor"} -C3L-01307.WGS.T.hg38 C3L-01307 UCEC WGS tumor CPT0064290007 c764cdc8-80c6-4b7a-a170-309fe582f17e_gdc_realn.bam 130657765184 BAM harmonized CPTAC3 ae515f49-8fe2-4239-a18a-241d6cb28f2d df95b664ea177a6c3e9065f7d99d7dbf {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor"} -C3L-01307.WXS.A C3L-01307 UCEC WXS tissue_normal CPT0064320009 CPT0064320009.WholeExome.RP-1303.bam 29159627485 BAM aligned CPTAC3 f7e3de87-876e-4489-85e3-35c751520108 970171288762894ed6e7706345fdd9f2 {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.WXS.A.hg38 C3L-01307 UCEC WXS tissue_normal CPT0064320009 31bfb1b0-4534-4f58-ad1c-77ca6cd3ffbe_wxs_gdc_realn.bam 39437623653 BAM harmonized CPTAC3 7c419047-ddb0-4f20-a71c-8a6ec782e741 0d03b86eeb626e509b692e47db35698c {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01307.WXS.N C3L-01307 UCEC WXS blood_normal CPT0065410002 CPT0065410002.WholeExome.RP-1303.bam 28387073560 BAM aligned CPTAC3 347e1925-154e-4498-9fd8-9761a9429e33 36702fa0a596ceb67172c9ed48008b14 {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal"} -C3L-01307.WXS.N.hg38 C3L-01307 UCEC WXS blood_normal CPT0065410002 40844e74-4b1b-46ff-a4ea-d8f743dce828_gdc_realn.bam 38685675474 BAM harmonized CPTAC3 88cb812e-8dbb-4315-b15d-2209fadb6c43 40ff908b2903357fe193199b4d66c31e {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal"} -C3L-01307.WXS.T C3L-01307 UCEC WXS tumor CPT0064290007 CPT0064290007.WholeExome.RP-1303.bam 27894006956 BAM aligned CPTAC3 a183c0c4-67d7-4c30-9c5e-3d7bbf8e8e02 84679cafdab56d4679b84397acefb188 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor"} -C3L-01307.WXS.T.hg38 C3L-01307 UCEC WXS tumor CPT0064290007 c764cdc8-80c6-4b7a-a170-309fe582f17e_gdc_realn.bam 38574187176 BAM harmonized CPTAC3 25baf71c-839d-4432-9960-59f47e1c37d7 90bc3f914a8e5ba3820dabdab4db151b {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor"} -C3L-01311.MethArray.Green.T C3L-01311 UCEC Methylation_Array tumor CPT0077770013 202163550007_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a1d12177-b44a-46c8-957a-1b9a91b80b90 fc6a39ffc92644b5ef4fd706d7d9681c {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor"} -C3L-01311.MethArray.Red.T C3L-01311 UCEC Methylation_Array tumor CPT0077770013 202163550007_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 037b5b91-d633-4858-8e90-516b4d68793d 49b6c360e4eac9d589b639428d9cb1e8 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor"} -C3L-01311.miRNA-Seq.A.hg38 C3L-01311 UCEC miRNA-Seq tissue_normal CPT0077780006 30ed4d25-e17c-4705-b4d4-57cca75465bf_mirnaseq_gdc_realn.bam 251923275 BAM harmonized CPTAC3 23296869-3f11-4568-9ac4-f6f0393b5329 84222dc7b711b99e0fdb7f8d4ba0cebd {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.miRNA-Seq.S23_L007_R1.T C3L-01311 UCEC miRNA-Seq tumor CPT0077770006 181012_UNC32-K00270_0124_AH223CBBXY_CGATGT_S23_L007_R1_001.unaln.bam 279800636 BAM S23_L007_R1 unaligned CPTAC3 5899ae4e-6f9e-4f95-bf07-c2802d547cb8 684ac9733c60cd32f343d4d8265103dc {"aliquot_tag": "ALQ_91e321c7", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01311.miRNA-Seq.S4_L006_R1.A C3L-01311 UCEC miRNA-Seq tissue_normal CPT0077780006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L006_R1_001.unaln.bam 224512143 BAM S4_L006_R1 unaligned CPTAC3 12e70d8a-1a82-4ac6-9773-9f1647918cb9 31fcb5c3c4fa6572374be6180191ad08 {"aliquot_tag": "ALQ_13b3b616", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.miRNA-Seq.T.hg38 C3L-01311 UCEC miRNA-Seq tumor CPT0077770006 c4cec702-2a15-4315-8a3c-559d3c2243f8_mirnaseq_gdc_realn.bam 313353360 BAM harmonized CPTAC3 8a98ede5-315c-43e5-b16e-8ff4c80c7591 63f0e304526f9e4a2afde4e882d4ba0d {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.chimeric.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.chimeric.gdc_realn.bam 139650560 BAM chimeric harmonized CPTAC3 48afa087-478a-4c9f-bcc8-4cad98ebc34b b634de80285375b734d682d184e1a4cb {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.RNA-Seq.chimeric.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.chimeric.gdc_realn.bam 172410517 BAM chimeric harmonized CPTAC3 0c75c3cf-50e8-4eb6-b3ba-0dcf679c8a67 ff9efb36245c2f5b8701e6b1ad3021ef {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.chimeric.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.chimeric.gdc_realn.bam 197448413 BAM chimeric harmonized CPTAC3 55f4ee24-73dc-44d2-992a-6886eba79056 c2c5ee04ac41814398bc68b0d63f2b2f {"aliquot_tag": "ALQ_6090497f", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.genomic.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.genomic.gdc_realn.bam 8507029863 BAM genomic harmonized CPTAC3 f7b48b5f-af28-48b3-8dcf-21924924a42e f43035ed5d7bd0a9c245eae51fd74b3a {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.RNA-Seq.genomic.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.genomic.gdc_realn.bam 8518332242 BAM genomic harmonized CPTAC3 51ef905e-ffb6-4d76-8e88-d5216ddd2509 f74b97aa9e1d50bc102d3d97cedea8aa {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.genomic.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.genomic.gdc_realn.bam 9488373231 BAM genomic harmonized CPTAC3 6995645a-6603-4f9f-81dc-7be65068ed38 6dfc19bf7a0d883788fb886f68781943 {"aliquot_tag": "ALQ_6090497f", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.S12_L003_R1.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R1_001.fastq.gz 4125388941 FASTQ S12_L003_R1 unaligned CPTAC3 391b8dfd-1857-41ff-8af2-ea0830668f60 b4ed34ecfec57540151a185a7c998536 {"aliquot_tag": "ALQ_91e321c7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.S12_L003_R2.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4477169908 FASTQ S12_L003_R2 unaligned CPTAC3 5b4f8676-cead-4e7a-b932-58fb3d37f3a1 95fba85ae6b9d7d6548a736e8e8db3da {"aliquot_tag": "ALQ_91e321c7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.S6_L002_R1.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R1_001.fastq.gz 4055784418 FASTQ S6_L002_R1 unaligned CPTAC3 46a9c137-590c-40f8-83a9-848a8d0437a5 68d00a6f09931f5e051fcb0d445ca958 {"aliquot_tag": "ALQ_13b3b616", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.RNA-Seq.S6_L002_R2.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R2_001.fastq.gz 4516971985 FASTQ S6_L002_R2 unaligned CPTAC3 7bcd0306-0e63-4202-88b1-1ed2497e3547 6c5e7e0df2ed004d82923b6c5ef2d475 {"aliquot_tag": "ALQ_13b3b616", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.RNA-Seq.S88_R1.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R1_001.fastq.gz 6177807684 FASTQ S88_R1 unaligned CPTAC3 f0441d62-5b57-436f-9024-09fdb1312f4a e722f1fadf82e8ad4c9c7226cfaeef34 {"aliquot_tag": "ALQ_6090497f", "sample": "S88", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.S88_R2.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R2_001.fastq.gz 6375668356 FASTQ S88_R2 unaligned CPTAC3 e64eac34-5a52-4ed5-a7c8-ab8841b16c69 5ce5f69c445db083389086c9d3d88c19 {"aliquot_tag": "ALQ_6090497f", "sample": "S88", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.transcriptome.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.transcriptome.gdc_realn.bam 9840938984 BAM transcriptome harmonized CPTAC3 3f1a626b-5e02-497a-80ad-4ff633bc2911 90c0e2764a36319ee9f5690dbdbd497f {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.RNA-Seq.transcriptome.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.transcriptome.gdc_realn.bam 11280475073 BAM transcriptome harmonized CPTAC3 f0f40f39-a6da-4da1-8fad-8e9d7c9a9677 4fc3eab76c2b83e34625fbae5ec0d366 {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor"} -C3L-01311.RNA-Seq.transcriptome.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.transcriptome.gdc_realn.bam 5060040897 BAM transcriptome harmonized CPTAC3 c956bd5f-c932-47f4-8b3c-acc87bdbf130 10550093ee493aca6e0936ad79cae2ba {"aliquot_tag": "ALQ_6090497f", "gdc_sample_type": "Primary Tumor"} -C3L-01311.WGS.A C3L-01311 UCEC WGS tissue_normal CPT0077780009 CPT0077780009.WholeGenome.RP-1303.bam 51982784575 BAM aligned CPTAC3 f140760d-3c58-4cda-856d-334d58cfb2e2 73944346b013ec120e9fba76b8fb6c4f {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.WGS.A.hg38 C3L-01311 UCEC WGS tissue_normal CPT0077780009 86110805-316c-40e9-b3f6-1801b343cf7b_wgs_gdc_realn.bam 77353099444 BAM harmonized CPTAC3 4d910b82-92f6-42e4-a27f-2e134d0a894f 0881274e85ac6368006ada4220d24ae1 {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.WGS.N C3L-01311 UCEC WGS blood_normal CPT0080090002 CPT0080090002.WholeGenome.RP-1303.bam 63605626281 BAM aligned CPTAC3 663f16bf-4fc8-4e95-9a89-90facb986d7c 68a800564f7106404ed8e9c99c9b935f {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal"} -C3L-01311.WGS.N.hg38 C3L-01311 UCEC WGS blood_normal CPT0080090002 20730bb0-a420-4cc3-91ea-80c765ccd3cf_gdc_realn.bam 96932135255 BAM harmonized CPTAC3 d373e6d9-c4a8-4c0b-953d-49aa71477f7f 20080f46b2f05d74acaf1dc285c3ad11 {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal"} -C3L-01311.WGS.T C3L-01311 UCEC WGS tumor CPT0077770013 CPT0077770013.WholeGenome.RP-1303.bam 59591177517 BAM aligned CPTAC3 b565a608-3019-41c6-a015-7549626b03f6 09dfa5d60b9ceba1bbd9be36ba983b23 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor"} -C3L-01311.WGS.T.hg38 C3L-01311 UCEC WGS tumor CPT0077770013 b56bd2bb-ba83-4a80-835e-1c42b477fb0a_gdc_realn.bam 88896147208 BAM harmonized CPTAC3 9b170866-2a3a-4ad9-bc1e-cf0d2804648c e2baba26b60857b1f992096a5f911336 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor"} -C3L-01311.WXS.A C3L-01311 UCEC WXS tissue_normal CPT0077780009 CPT0077780009.WholeExome.RP-1303.bam 32431469010 BAM aligned CPTAC3 70230cba-5a36-4c1d-9c76-12a6e0b34af1 b3243b4302e3d6c098f9b0528018bd13 {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.WXS.A.hg38 C3L-01311 UCEC WXS tissue_normal CPT0077780009 86110805-316c-40e9-b3f6-1801b343cf7b_wxs_gdc_realn.bam 44443850256 BAM harmonized CPTAC3 07cb7b76-b359-4681-bcfa-28ee682197b2 99f3b993f7036971554dd41a939d3949 {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01311.WXS.N C3L-01311 UCEC WXS blood_normal CPT0080090002 CPT0080090002.WholeExome.RP-1303.bam 28632828882 BAM aligned CPTAC3 cf8616a6-22c6-4235-80b4-9e85d9f6ad40 ff35e77040602c0270ce5b51d3e7a6e7 {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal"} -C3L-01311.WXS.N.hg38 C3L-01311 UCEC WXS blood_normal CPT0080090002 20730bb0-a420-4cc3-91ea-80c765ccd3cf_gdc_realn.bam 39721766046 BAM harmonized CPTAC3 1186aea4-bfdd-45ef-bc0a-683c289fd617 988be087a9f99901cda098bb30284b2f {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal"} -C3L-01311.WXS.T C3L-01311 UCEC WXS tumor CPT0077770013 CPT0077770013.WholeExome.RP-1303.bam 31241352549 BAM aligned CPTAC3 11cc9aab-415f-42be-9fd2-f9e4d9b0e21c 4df409a4d5f78240e5c12157f370d911 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor"} -C3L-01311.WXS.T.hg38 C3L-01311 UCEC WXS tumor CPT0077770013 b56bd2bb-ba83-4a80-835e-1c42b477fb0a_gdc_realn.bam 42837152533 BAM harmonized CPTAC3 b56d2614-afdd-4be1-8629-69a7cf24d6ce b64adfa6b2d5857c64e8a4ed0a299db0 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor"} -C3L-01312.MethArray.Green.T C3L-01312 UCEC Methylation_Array tumor CPT0063670006 202184990063_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7e031175-be9b-4c61-9282-e9191861924b f4c1a7dba40c74f7b78ee94acbfbd20b {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor"} -C3L-01312.MethArray.Red.T C3L-01312 UCEC Methylation_Array tumor CPT0063670006 202184990063_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 a7db2c15-4a19-40b0-b0d6-4a205e46ad59 ae619626592082372da1c9134dc483ab {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor"} -C3L-01312.miRNA-Seq.S11_L003_R1.T C3L-01312 UCEC miRNA-Seq tumor CPT0063670009 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGGCC_S11_L003_R1_001.unaln.bam 335971058 BAM S11_L003_R1 unaligned CPTAC3 e7f4bba8-f1fe-44fd-a59e-b57367b586a6 d4d28e1ba7b6db1b3d3dec29e3573d59 {"aliquot_tag": "ALQ_f2e5cb7e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01312.miRNA-Seq.T.hg38 C3L-01312 UCEC miRNA-Seq tumor CPT0063670009 4d40f8e1-8327-4d33-bf81-ce287c04b086_mirnaseq_gdc_realn.bam 366281372 BAM harmonized CPTAC3 38d39888-62da-40fb-a17f-fd85c69ca7fa 6f72c44568bc7312877c7cd90b65b9ca {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.chimeric.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.chimeric.gdc_realn.bam 35009826 BAM chimeric harmonized CPTAC3 dc958f85-338f-46da-866e-0c5be631351d cc5f3dc1e33a8a38ff6de25e3633b034 {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.chimeric.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.chimeric.gdc_realn.bam 111928471 BAM chimeric harmonized CPTAC3 b831018b-5dea-4c27-bf10-b1bf04b8df0b 3a649323e2cb22c8c2550aa591019036 {"aliquot_tag": "ALQ_5df060cf", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.genomic.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.genomic.gdc_realn.bam 8806227526 BAM genomic harmonized CPTAC3 5f2d09f6-084f-4623-983b-3dd81be032bb 6cb8b0ff2f274e98e2e1508b074f9e3b {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.genomic.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.genomic.gdc_realn.bam 5934755667 BAM genomic harmonized CPTAC3 a3bb00e9-b296-4967-b002-151f861ca95e b8dc3c7393e43eb9da96dc7ae9bb9aab {"aliquot_tag": "ALQ_5df060cf", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.S6_L008_R1.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4294742113 FASTQ S6_L008_R1 unaligned CPTAC3 bcbd006a-fd60-43db-905d-aa6e729f314a 1586574a96d8358b8d3a0adc95a5126a {"aliquot_tag": "ALQ_f2e5cb7e", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.S6_L008_R2.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 4571900403 FASTQ S6_L008_R2 unaligned CPTAC3 f3db77a2-db19-4942-8c2e-3b69f81a956b 94122c45f1902b6bb6e30b9a161ad66e {"aliquot_tag": "ALQ_f2e5cb7e", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.S93_R1.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R1_001.fastq.gz 3293285610 FASTQ S93_R1 unaligned CPTAC3 1086fe42-7b9a-4e51-ae28-ad047ae45940 dcc7bba3d34e2615c1d40424bca060b6 {"aliquot_tag": "ALQ_5df060cf", "sample": "S93", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.S93_R2.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R2_001.fastq.gz 3410281180 FASTQ S93_R2 unaligned CPTAC3 33574452-d1cb-4331-b99a-ce281a7fd7ec f5a8e12d1fbab56cfbadc84230a2755a {"aliquot_tag": "ALQ_5df060cf", "sample": "S93", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.transcriptome.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.transcriptome.gdc_realn.bam 12044310676 BAM transcriptome harmonized CPTAC3 95656a10-6ddd-41f7-9053-32763798b318 8fc19ffdf24b498f42f6c37ae0f28cd1 {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor"} -C3L-01312.RNA-Seq.transcriptome.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.transcriptome.gdc_realn.bam 2839108855 BAM transcriptome harmonized CPTAC3 98dee3b4-f428-4f63-aa88-0e9c6b8093dd e5a14f8197ef3f1d0ab89e4e0b37aacc {"aliquot_tag": "ALQ_5df060cf", "gdc_sample_type": "Primary Tumor"} -C3L-01312.WGS.N C3L-01312 UCEC WGS blood_normal CPT0065300002 CPT0065300002.WholeGenome.RP-1303.bam 63433344995 BAM aligned CPTAC3 2e824a60-afa4-4bce-b300-2704302d6be1 de910e770dd86d82247cbc588cd7c7ff {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01312.WGS.N.hg38 C3L-01312 UCEC WGS blood_normal CPT0065300002 21d6d362-118e-4dfe-9130-7aeb1bf82058_gdc_realn.bam 95091191377 BAM harmonized CPTAC3 76e906be-7778-4801-9ae9-6200be0649d4 ddca55caedf3485d6834c064c3a01297 {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01312.WGS.T C3L-01312 UCEC WGS tumor CPT0063670006 CPT0063670006.WholeGenome.RP-1303.bam 71881836416 BAM aligned CPTAC3 322484a4-e91b-494d-a6c1-c31c6c218369 ab463fd668cffdaeff5f1e0aa1a997cf {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor"} -C3L-01312.WGS.T.hg38 C3L-01312 UCEC WGS tumor CPT0063670006 36a47ab1-152f-4078-855e-82e726b1778f_gdc_realn.bam 112424600224 BAM harmonized CPTAC3 5eacf3e4-6cc2-48d0-ac48-cdd70d4f591b 2204ab91fc86fa3d7a99944760537a9c {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor"} -C3L-01312.WXS.N C3L-01312 UCEC WXS blood_normal CPT0065300002 CPT0065300002.WholeExome.RP-1303.bam 26389205103 BAM aligned CPTAC3 f4e766bd-7f64-420a-9972-da5865c8deb0 4ca3dc8368620b81fa6c502a1855f162 {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01312.WXS.N.hg38 C3L-01312 UCEC WXS blood_normal CPT0065300002 21d6d362-118e-4dfe-9130-7aeb1bf82058_gdc_realn.bam 35415091350 BAM harmonized CPTAC3 142a53dc-3e84-4a26-8b71-e3c0926a54b7 444a29c6f13fccc01823c3c406fa47fc {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01312.WXS.T C3L-01312 UCEC WXS tumor CPT0063670006 CPT0063670006.WholeExome.RP-1303.bam 39966626130 BAM aligned CPTAC3 3761c9f6-ed8b-461c-b3a9-4d657d4a503c edf79d95b405f20320c1fc4a2c85acd5 {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor"} -C3L-01312.WXS.T.hg38 C3L-01312 UCEC WXS tumor CPT0063670006 36a47ab1-152f-4078-855e-82e726b1778f_gdc_realn.bam 55759767131 BAM harmonized CPTAC3 c03828a8-c41d-4fc6-a3ba-6ec5908a4f7a 269d9ddbd25bedfd022e8310438dce49 {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor"} -C3L-01313.MethArray.Green.A C3L-01313 CCRCC Methylation_Array tissue_normal CPT0086830009 204930640023_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 80472c8c-9600-4080-a14b-c11b204e2887 b5db1f4dd00ad66429529e7b8f0c9349 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.MethArray.Green.T C3L-01313 CCRCC Methylation_Array tumor CPT0086820009 202184990066_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1230aad5-4680-4138-baf2-33b96500b9cc be35c9ac0d2dac99ca6e1d49d1073c4b {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor"} -C3L-01313.MethArray.Red.A C3L-01313 CCRCC Methylation_Array tissue_normal CPT0086830009 204930640023_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 937e6d30-7cc1-4939-9e76-270553101819 b9f254bb5bfd97afe265d83fd33685e2 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.MethArray.Red.T C3L-01313 CCRCC Methylation_Array tumor CPT0086820009 202184990066_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 bfdf6ffa-d768-45b9-9790-702d9d55cb8a 59f47c96b83890e38198a65c31189ac0 {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor"} -C3L-01313.miRNA-Seq.A.hg38 C3L-01313 CCRCC miRNA-Seq tissue_normal CPT0086830006 c1b9066d-3de9-4ff1-b2ee-0e570749b670_mirnaseq_gdc_realn.bam 218048315 BAM harmonized CPTAC3 7a76515b-e440-4349-bdd5-fc8c71269f5e 6ec6824d21a64d748379eb2e6bf17fc8 {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.miRNA-Seq.S13_L008_R1.T C3L-01313 CCRCC miRNA-Seq tumor CPT0086820006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L008_R1_001.unaln.bam 197906171 BAM S13_L008_R1 unaligned CPTAC3 915b50fb-1893-43e0-ad93-8700605bd8bf 1246b8831bd1a981795781e9d3129e32 {"aliquot_tag": "ALQ_d702057a", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01313.miRNA-Seq.S14_L005_R1.A C3L-01313 CCRCC miRNA-Seq tissue_normal CPT0086830006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L005_R1_001.unaln.bam 191457892 BAM S14_L005_R1 unaligned CPTAC3 951eb655-9535-42b2-9fbf-4184d779cac1 68c2b8372630329528ef7f7ff59ac96c {"aliquot_tag": "ALQ_ea622cca", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.miRNA-Seq.T.hg38 C3L-01313 CCRCC miRNA-Seq tumor CPT0086820006 a27e2d9d-f555-4914-af17-a0dc87ebb2bd_mirnaseq_gdc_realn.bam 217922284 BAM harmonized CPTAC3 7f271074-ce07-4dec-9c49-2b5d31494b29 acb91b5908c4bf12d3adc0d6230a82fa {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor"} -C3L-01313.RNA-Seq.chimeric.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.chimeric.gdc_realn.bam 100727254 BAM chimeric harmonized CPTAC3 48f4bf52-0191-4cb6-ad9b-7c9da13078c7 bc6b76bdaa18e0aae6410aa9988c9c2f {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.RNA-Seq.chimeric.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.chimeric.gdc_realn.bam 33125804 BAM chimeric harmonized CPTAC3 ccaa2820-38f9-41f4-aef4-5e71acfccb0f 0e164daa4ffebb6c1a9f96118ba73273 {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor"} -C3L-01313.RNA-Seq.genomic.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.genomic.gdc_realn.bam 7524182379 BAM genomic harmonized CPTAC3 f90df0c9-b7fc-48cd-9fee-5219d4c1a7f2 e40a34778bc048fadf2fae1594b42b78 {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.RNA-Seq.genomic.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.genomic.gdc_realn.bam 6936812821 BAM genomic harmonized CPTAC3 ea0c3adb-0bdd-46de-b8af-cc34683a7150 7387ffddc74528b245aecea46dfa4100 {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor"} -C3L-01313.RNA-Seq.S16_L006_R1.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R1_001.fastq.gz 3527851467 FASTQ S16_L006_R1 unaligned CPTAC3 0138a8d4-1eda-45fc-9516-eee215e5cebc 678860e5bf2251e7dd80f8285266feb3 {"aliquot_tag": "ALQ_d702057a", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01313.RNA-Seq.S16_L006_R2.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R2_001.fastq.gz 3424569482 FASTQ S16_L006_R2 unaligned CPTAC3 d6018ec3-38ff-4147-9cac-d0a9fea156af 4be6aa54f97646399eaf46d8934344c5 {"aliquot_tag": "ALQ_d702057a", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01313.RNA-Seq.S5_L002_R1.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 3913365668 FASTQ S5_L002_R1 unaligned CPTAC3 352bd1f3-e4b4-4883-8b16-2bca8faa3175 2ed8f09a9f96c899f50f9a71ac572b7e {"aliquot_tag": "ALQ_ea622cca", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.RNA-Seq.S5_L002_R2.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 4071605231 FASTQ S5_L002_R2 unaligned CPTAC3 c617733c-0b14-473b-a21d-fd0849bac86e 5203e7fc8ce62bc54478b6edb4ca477b {"aliquot_tag": "ALQ_ea622cca", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.RNA-Seq.transcriptome.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.transcriptome.gdc_realn.bam 9340158325 BAM transcriptome harmonized CPTAC3 50984d04-0e92-4100-9bac-ba5a765e0869 0ce81d51a9a5715c0063737f9531e6aa {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.RNA-Seq.transcriptome.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.transcriptome.gdc_realn.bam 8374258014 BAM transcriptome harmonized CPTAC3 5db23ec9-f508-4820-982d-a2e8be25acf3 6c33f92a46732421f9f3422111a5e9f4 {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor"} -C3L-01313.WGS.A C3L-01313 CCRCC WGS tissue_normal CPT0086830009 CPT0086830009.WholeGenome.RP-1303.bam 59317828295 BAM aligned CPTAC3 93f2881a-6349-43e7-b3c2-1d931dec29ca 08d919ad65982f8c564d0b9ddb072ddf {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.WGS.A.hg38 C3L-01313 CCRCC WGS tissue_normal CPT0086830009 2b45a2a4-b594-48fa-9a93-5e8951b43fef_wgs_gdc_realn.bam 86280542011 BAM harmonized CPTAC3 17b79fe5-a496-4fe8-bd42-d376e45645c4 971a7dbe9d9a14ecb92bc5beb6f9e1b8 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.WGS.N C3L-01313 CCRCC WGS blood_normal CPT0087430002 CPT0087430002.WholeGenome.RP-1303.bam 81713181657 BAM aligned CPTAC3 5c680bf0-9de3-4084-97f5-6c3cab7d292f 4c2a62b4517ece3dbf7f7279bc817b31 {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01313.WGS.N.hg38 C3L-01313 CCRCC WGS blood_normal CPT0087430002 7c8a6a6d-4e27-40d7-af65-aed871abbd2f_gdc_realn.bam 120624062236 BAM harmonized CPTAC3 5bef9e8b-801e-41ac-88f3-affa923acc17 5f567cd6a683da2dd72ee94361948131 {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01313.WGS.T C3L-01313 CCRCC WGS tumor CPT0086820009 CPT0086820009.WholeGenome.RP-1303.bam 76592271706 BAM aligned CPTAC3 a6d7168d-70e4-415f-a690-cf925d71a7ff cea37781eadee70103f25cbe2d346d2e {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor"} -C3L-01313.WGS.T.hg38 C3L-01313 CCRCC WGS tumor CPT0086820009 3f1962c7-2a1e-4ac9-b8e0-3e0ab8150728_gdc_realn.bam 114858412722 BAM harmonized CPTAC3 3c75357f-8172-4bd1-b5af-3028766f001b 9cbe72ccaec8d65583a7883d836a6860 {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor"} -C3L-01313.WXS.A C3L-01313 CCRCC WXS tissue_normal CPT0086830009 CPT0086830009.WholeExome.RP-1303.bam 34509592760 BAM aligned CPTAC3 9b13a1f0-bae0-4397-8add-fb4f0af433aa aed88f52dcfe1122e1c9d9428c7ede9b {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.WXS.A.hg38 C3L-01313 CCRCC WXS tissue_normal CPT0086830009 2b45a2a4-b594-48fa-9a93-5e8951b43fef_wxs_gdc_realn.bam 46451072602 BAM harmonized CPTAC3 e48fa87a-11bb-464a-a2e6-21b8f2380a2c 9d1dceb945111bc08cd3e23a22fe79e0 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01313.WXS.N C3L-01313 CCRCC WXS blood_normal CPT0087430002 CPT0087430002.WholeExome.RP-1303.bam 31467584141 BAM aligned CPTAC3 91f3c0c1-33da-401e-aa32-e34f6f665f01 75b536233de608155da19099d3535877 {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01313.WXS.N.hg38 C3L-01313 CCRCC WXS blood_normal CPT0087430002 7c8a6a6d-4e27-40d7-af65-aed871abbd2f_gdc_realn.bam 42662768467 BAM harmonized CPTAC3 915b1b1c-c564-4511-a687-ae0855339a53 1a950ab0ffa33a1c5d0206f2db6c26fd {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01313.WXS.T C3L-01313 CCRCC WXS tumor CPT0086820009 CPT0086820009.WholeExome.RP-1303.bam 27615905367 BAM aligned CPTAC3 09d4fa8f-eba7-4cc2-941c-23874b0669f5 d89e827ddeb303571edd0623325c72bf {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor"} -C3L-01313.WXS.T.hg38 C3L-01313 CCRCC WXS tumor CPT0086820009 3f1962c7-2a1e-4ac9-b8e0-3e0ab8150728_gdc_realn.bam 38219874416 BAM harmonized CPTAC3 fe34a8b3-5910-4280-8b98-49283ddeac24 60209796a062ab1a7444428016daf3fa {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor"} -C3L-01327.MethArray.Green.T C3L-01327 GBM Methylation_Array tumor CPT0064890009 202176290116_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 31e535e0-b739-4d85-9324-43c5a29ce04e 5c0355455b4dd6970a7fa13f8edfb17a {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor"} -C3L-01327.MethArray.Red.T C3L-01327 GBM Methylation_Array tumor CPT0064890009 202176290116_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 225be72f-872f-4b41-8d96-87fac9886439 72d1e8f4ad50b868d512bbe4e0c9523e {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor"} -C3L-01327.miRNA-Seq.S26_L002_R1.T C3L-01327 GBM miRNA-Seq tumor CPT0064890006 190813_UNC32-K00270_0196_AH5MCWBBXY_TACAGC_S26_L002_R1_001.unaln.bam 361198347 BAM S26_L002_R1 unaligned CPTAC3 5f062fad-d76d-468e-83a2-8d2172dd47c1 dad64fab9fe516c1abfd5739fbb3e0a4 {"aliquot_tag": "ALQ_22c73770", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01327.miRNA-Seq.T.hg38 C3L-01327 GBM miRNA-Seq tumor CPT0064890006 914c4fc7-6eea-4447-bf89-935a8413127f_mirnaseq_gdc_realn.bam 411930135 BAM harmonized CPTAC3 4557d3fc-d131-4113-95cb-b05b678df87c d02957605e56158d865b69df51bcc7ac {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor"} -C3L-01327.RNA-Seq.chimeric.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.chimeric.gdc_realn.bam 55092457 BAM chimeric harmonized CPTAC3 3e76f536-6c0e-424d-a2a8-db17f680ee49 0267da1562730ba06a41cb6221efaf0e {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor"} -C3L-01327.RNA-Seq.genomic.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.genomic.gdc_realn.bam 6675174478 BAM genomic harmonized CPTAC3 f733a605-f6bb-46c1-b8c6-8ede10e46469 5437ee79dce72a4389a87555945a5857 {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor"} -C3L-01327.RNA-Seq.S16_L004_R1.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3051942729 FASTQ S16_L004_R1 unaligned CPTAC3 2a69a48b-eeeb-473c-9ff9-9ea09cb43090 0226c8a27d40d95208f055973a0f713d {"aliquot_tag": "ALQ_22c73770", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01327.RNA-Seq.S16_L004_R2.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3385695454 FASTQ S16_L004_R2 unaligned CPTAC3 00d4635f-27ee-4351-a39c-230ebb366fd7 c1a9850e5714332b6cc981d4bb245585 {"aliquot_tag": "ALQ_22c73770", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01327.RNA-Seq.transcriptome.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.transcriptome.gdc_realn.bam 7317150938 BAM transcriptome harmonized CPTAC3 82f3738c-617d-4c62-990c-c9743bcc5050 5c6f769caf7578b29ac2d2f956ef4227 {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor"} -C3L-01327.WGS.N C3L-01327 GBM WGS blood_normal CPT0066690002 CPT0066690002.WholeGenome.RP-1303.bam 82382827555 BAM aligned CPTAC3 d8c9db7c-5839-4683-9f24-281ca8833824 c33bc934a9e94ac32c05aac02e667c40 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal"} -C3L-01327.WGS.N.hg38 C3L-01327 GBM WGS blood_normal CPT0066690002 d0dc9d75-a40c-4673-af55-912e85b82593_gdc_realn.bam 125494357631 BAM harmonized CPTAC3 dbe76591-1276-49d4-a0d5-22878b05c8f9 0e329b7f4aecdb45661fa05760ce5467 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal"} -C3L-01327.WGS.T C3L-01327 GBM WGS tumor CPT0064890009 CPT0064890009.WholeGenome.RP-1303.bam 65492288640 BAM aligned CPTAC3 ae894eaf-82cb-4156-9586-f3f6c45b7963 8c94526fb092064aa38ee0b18711f66c {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor"} -C3L-01327.WGS.T.hg38 C3L-01327 GBM WGS tumor CPT0064890009 3b2c4984-e1ca-4748-bb09-e62be4918bae_gdc_realn.bam 98566544991 BAM harmonized CPTAC3 f573ff27-2c76-4d3a-92fa-050676487f52 964990d241cd579db228249e4af16ee0 {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor"} -C3L-01327.WXS.N C3L-01327 GBM WXS blood_normal CPT0066690002 CPT0066690002.WholeExome.RP-1303.bam 27511617665 BAM aligned CPTAC3 8343af23-a3e6-4286-8508-2520ed91a050 4a157725929bed2c666edd6957d63697 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal"} -C3L-01327.WXS.N.hg38 C3L-01327 GBM WXS blood_normal CPT0066690002 d0dc9d75-a40c-4673-af55-912e85b82593_gdc_realn.bam 37433145662 BAM harmonized CPTAC3 601034a1-3239-4052-8b81-1acd2c84904f 725ab04b59d19abaceabb285ef855970 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal"} -C3L-01327.WXS.T C3L-01327 GBM WXS tumor CPT0064890009 CPT0064890009.WholeExome.RP-1303.bam 30037298440 BAM aligned CPTAC3 e3a8cd87-24fe-454c-ad24-03efd48adf1a ad5b05e996bc969da41ef10d19b15a81 {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor"} -C3L-01327.WXS.T.hg38 C3L-01327 GBM WXS tumor CPT0064890009 3b2c4984-e1ca-4748-bb09-e62be4918bae_gdc_realn.bam 41361369093 BAM harmonized CPTAC3 d97f54cc-c55d-4ec5-839b-c331b0f96e5a eff844ef99b8046c30e4d972486f4d61 {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor"} -C3L-01328.MethArray.Green.A C3L-01328 PDA Methylation_Array tissue_normal CPT0083290006 203561450106_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4819a418-2991-4bc9-b5dd-958b15373632 501afcbb2b89e94a6367ad80001b47ee {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.MethArray.Green.T C3L-01328 PDA Methylation_Array tumor CPT0083270006 202176290095_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4734d09b-b696-4180-adc1-f7a2d944551f 47855d0f70bac6fda6bb3bbfe6a747a5 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor"} -C3L-01328.MethArray.Red.A C3L-01328 PDA Methylation_Array tissue_normal CPT0083290006 203561450106_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 562266a1-64bf-4071-be3e-161bf6d497e2 6954905ac80a95ef592868c9e143a407 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.MethArray.Red.T C3L-01328 PDA Methylation_Array tumor CPT0083270006 202176290095_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 79c25674-f522-4e5b-8230-38aa6747463c a15abf2a2987a462a2f1a8b8910c6b88 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor"} -C3L-01328.miRNA-Seq.A.hg38 C3L-01328 PDA miRNA-Seq tissue_normal CPT0083290009 bb421dec-3cf1-49b2-8ac4-478dd4812a1a_mirnaseq_gdc_realn.bam 305343322 BAM harmonized CPTAC3 4611d35f-f9ff-4025-9c32-cc4ae1596b21 8124d9a5b7fbf9c27f3fa03ff1a83e38 {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.miRNA-Seq.S26_L002_R1.A C3L-01328 PDA miRNA-Seq tissue_normal CPT0083290009 181119_UNC31-K00269_0165_AH27WCBBXY_CGATGT_S26_L002_R1_001.unaln.bam 276927989 BAM S26_L002_R1 unaligned CPTAC3 23f6bd8f-e5ba-41f6-832d-4c0446f279c3 b70b591c06112a04069f8b1b6332e111 {"aliquot_tag": "ALQ_c3ce253b", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.miRNA-Seq.S2_L006_R1.T C3L-01328 PDA miRNA-Seq tumor CPT0083270009 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L006_R1_001.unaln.bam 204572258 BAM S2_L006_R1 unaligned CPTAC3 464ff502-358d-43ec-99d7-a53966b0bf23 1fa718e80a799bc5918743b00f03d6d4 {"aliquot_tag": "ALQ_7cfe9b5a", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01328.miRNA-Seq.T.hg38 C3L-01328 PDA miRNA-Seq tumor CPT0083270009 0dd6d435-ec09-4873-890a-8c250eee5961_mirnaseq_gdc_realn.bam 224339939 BAM harmonized CPTAC3 776ade15-0a7d-47ad-a266-abe67d006f65 90e6d5df791a5629db4edd551c15dba7 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor"} -C3L-01328.RNA-Seq.chimeric.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.chimeric.gdc_realn.bam 45003326 BAM chimeric harmonized CPTAC3 45b4fd42-dc20-4e2b-b452-cc7fe8f4fcda deeddc0692c04349475fde14b8e97f48 {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.RNA-Seq.chimeric.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.chimeric.gdc_realn.bam 48393175 BAM chimeric harmonized CPTAC3 fef0110f-d6af-482d-8640-ddba28f504fb 165c14d782fa82baf49e8fc304c12bd4 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor"} -C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.genomic.gdc_realn.bam 11355970334 BAM genomic harmonized CPTAC3 015d71b1-0bd1-4a19-a9e6-715d3af57314 72b9a5a1fed8b9a3172f9e9203172dde {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.genomic.gdc_realn.bam 9452358062 BAM genomic harmonized CPTAC3 56ea54d2-2bf3-44ed-8650-8c269098d1e4 72ed694485df0f8a461397ee529b6244 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor"} -C3L-01328.RNA-Seq.S11_L003_R1.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4773594378 FASTQ S11_L003_R1 unaligned CPTAC3 140c920a-1034-4bd0-b3ae-cda59eaf729d 3d5e5e2368c9c968e6e7cbec398b1757 {"aliquot_tag": "ALQ_c3ce253b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.RNA-Seq.S11_L003_R2.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5326317172 FASTQ S11_L003_R2 unaligned CPTAC3 91373e81-5d8e-4e0e-b776-da23ccc8165e 22ffceec080d1fc3630ad454238b14cc {"aliquot_tag": "ALQ_c3ce253b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.RNA-Seq.S8_L002_R1.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3929468307 FASTQ S8_L002_R1 unaligned CPTAC3 50af033e-efd9-4223-9105-cec0998a7665 d489146b34a7bb64803dd33af8c197b4 {"aliquot_tag": "ALQ_7cfe9b5a", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01328.RNA-Seq.S8_L002_R2.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4292836821 FASTQ S8_L002_R2 unaligned CPTAC3 f79a8648-7ffd-4985-9510-96f6275e7ba8 0006119e9f3531c97f6c70f3ba2fe190 {"aliquot_tag": "ALQ_7cfe9b5a", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01328.RNA-Seq.transcriptome.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.transcriptome.gdc_realn.bam 14212831115 BAM transcriptome harmonized CPTAC3 3f040ad1-8c12-488c-8822-b3f15b60624b c8d15d2376b86ff3d691a8e15973152d {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.RNA-Seq.transcriptome.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.transcriptome.gdc_realn.bam 11075845406 BAM transcriptome harmonized CPTAC3 f9cacae2-3526-4222-a87b-55ffceb8a6f0 e714a7323c657787bb565860762a1af3 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor"} -C3L-01328.Targeted.T C3L-01328 PDA Targeted_Sequencing tumor CPT0083270006_1 CPT0083270006_1.CustomSelection.RP-1303.PDO-18786.bam 5323434123 BAM aligned CPTAC3 5bfb3cd8-1ec0-4ae2-849d-4c936eeaa99e 486676aef465fcff63495c3ea8d4d442 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor"} -C3L-01328.Targeted.T.hg38 C3L-01328 PDA Targeted_Sequencing tumor CPT0083270006_1 a1f1790d-0bc6-422f-bbec-1da8e59c9ecf_targetedsequencing_gdc_realn.bam 7473606650 BAM harmonized CPTAC3 2080cc6a-6458-4aa8-b09c-a7f1bd01735d 015ea5eceb0597733a108c42c55d2051 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor"} -C3L-01328.WGS.A C3L-01328 PDA WGS tissue_normal CPT0083290006 CPT0083290006.WholeGenome.RP-1303.bam 61081151406 BAM aligned CPTAC3 ac226008-2859-418f-a203-483dbf17fc3a e6f124e91249b209d510ccb9b66ec124 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.WGS.A.hg38 C3L-01328 PDA WGS tissue_normal CPT0083290006 6a5398e0-434f-4dea-8c9e-75cd3d1069a8_wgs_gdc_realn.bam 88259026630 BAM harmonized CPTAC3 80c596a7-1280-418b-962e-dc2db04052b8 b483ad2b3026f25fca6cf40c0fce7155 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.WGS.N C3L-01328 PDA WGS blood_normal CPT0081770002 CPT0081770002.WholeGenome.RP-1303.bam 79408684555 BAM aligned CPTAC3 f36cdc19-cffd-4fd2-97b5-91965c5f702f 7880e18388872305f19dc99d25f5d11a {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal"} -C3L-01328.WGS.N.hg38 C3L-01328 PDA WGS blood_normal CPT0081770002 f4f770b4-5f7c-42d2-a70b-ff0c35d237c8_gdc_realn.bam 118470215977 BAM harmonized CPTAC3 0e221953-4887-4bfb-88c0-68bda3757521 5b2e28d193d40ce53f6041e74a1675a1 {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal"} -C3L-01328.WGS.T C3L-01328 PDA WGS tumor CPT0083270006 CPT0083270006.WholeGenome.RP-1303.bam 75862906771 BAM aligned CPTAC3 d299db9c-814c-4342-b75a-f14472fd8f86 e5914b9743ff49ba31cb603ce10184c4 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor"} -C3L-01328.WGS.T.hg38 C3L-01328 PDA WGS tumor CPT0083270006 47bd35c7-9eca-4f60-b46b-0edc44d0ff36_gdc_realn.bam 112948045987 BAM harmonized CPTAC3 3cc251c7-c906-413a-8970-ea5cb3ffa7a3 e01c5e8284bd133b041477bded1ddfa3 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor"} -C3L-01328.WXS.A C3L-01328 PDA WXS tissue_normal CPT0083290006 CPT0083290006.WholeExome.RP-1303.bam 30304163670 BAM aligned CPTAC3 0274efe6-c32a-4920-a787-d2da72067492 53d281253982bdaf82247c1fd66991b5 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.WXS.A.hg38 C3L-01328 PDA WXS tissue_normal CPT0083290006 6a5398e0-434f-4dea-8c9e-75cd3d1069a8_wxs_gdc_realn.bam 41208665135 BAM harmonized CPTAC3 38e2caa6-68aa-4336-842d-53d785bff024 0a11e92b78da1c1be5183629a14eb418 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01328.WXS.N C3L-01328 PDA WXS blood_normal CPT0081770002 CPT0081770002.WholeExome.RP-1303.bam 48496685019 BAM aligned CPTAC3 84d3a925-65d0-4d90-8166-f1f488174b90 ac92f5775131190acf6ac4ba7b252e21 {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal"} -C3L-01328.WXS.N.hg38 C3L-01328 PDA WXS blood_normal CPT0081770002 f4f770b4-5f7c-42d2-a70b-ff0c35d237c8_gdc_realn.bam 65877688796 BAM harmonized CPTAC3 848fb576-3673-4f63-b817-ec7185ceeab0 8ab463df8df33a12c9aa96bb4f50c24a {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal"} -C3L-01328.WXS.T C3L-01328 PDA WXS tumor CPT0083270006_1 CPT0083270006_1.WholeExome.RP-1303.bam 71250892669 BAM aligned CPTAC3 095f2dfb-9a49-458f-ac99-4613112062b6 151dfd4a2b7e8b9218206f20a46ced00 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor"} -C3L-01328.WXS.T C3L-01328 PDA WXS tumor CPT0083270006 CPT0083270006.WholeExome.RP-1303.bam 38332381975 BAM aligned CPTAC3 7ba64b27-cf63-499f-ab23-af86f4531be0 11dd16242dc7fd8396d76f43b5d58411 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor"} -C3L-01328.WXS.T.hg38 C3L-01328 PDA WXS tumor CPT0083270006_1 a1f1790d-0bc6-422f-bbec-1da8e59c9ecf_wxs_gdc_realn.bam 97390411350 BAM harmonized CPTAC3 5024d5b1-2feb-4db3-9d62-a83177088a02 3459aac65bfc7354c4dc06869a6c7387 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor"} -C3L-01328.WXS.T.hg38 C3L-01328 PDA WXS tumor CPT0083270006 47bd35c7-9eca-4f60-b46b-0edc44d0ff36_gdc_realn.bam 52406988643 BAM harmonized CPTAC3 7d6d2d3b-98b9-41e4-8f4c-014245b7f8c7 06ec42946a687667c79db3d5626545b3 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor"} -C3L-01330.MethArray.Green.A C3L-01330 LUAD Methylation_Array tissue_normal CPT0083420009 203027390105_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 eb12575f-a8a8-4c8c-a40d-f2e7331419f3 7405795f1cc1a6222bba3884c2d025bf {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.MethArray.Green.T C3L-01330 LUAD Methylation_Array tumor CPT0083390007 202184900105_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0e25f43d-c19f-418d-bba3-f7bafbc9680f 99e03f41182df75ae84ce42dc5200fbd {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor"} -C3L-01330.MethArray.Red.A C3L-01330 LUAD Methylation_Array tissue_normal CPT0083420009 203027390105_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 951f8d11-0a97-4f3d-9d4a-8f3a501f5eb3 e64685dd0cc1b7de36a4d676878716b3 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.MethArray.Red.T C3L-01330 LUAD Methylation_Array tumor CPT0083390007 202184900105_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 5c88b9de-bff8-4d0f-b025-bebcfece98e0 e57eab8000846dc9ca210e90d474cfb5 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor"} -C3L-01330.miRNA-Seq.A.hg38 C3L-01330 LUAD miRNA-Seq tissue_normal CPT0083420006 5e709685-9e7b-4202-930f-8c36041fe599_mirnaseq_gdc_realn.bam 326362591 BAM harmonized CPTAC3 8269dd40-a887-4c38-9c35-b8ddf051bd09 2ae9adb58900594938bef138f7796b17 {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.miRNA-Seq.S35_L004_R1.T C3L-01330 LUAD miRNA-Seq tumor CPT0083390010 181113_UNC31-K00269_0164_AH23NNBBXY_GGCTAC_S35_L004_R1_001.unaln.bam 246971522 BAM S35_L004_R1 unaligned CPTAC3 e74c51bc-ddc7-4240-9f75-bc35bbdac630 400d4477c23e690cc4a9dc1140cf4a62 {"aliquot_tag": "ALQ_68557f7b", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01330.miRNA-Seq.S7_L007_R1.A C3L-01330 LUAD miRNA-Seq tissue_normal CPT0083420006 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L007_R1_001.unaln.bam 297353857 BAM S7_L007_R1 unaligned CPTAC3 fac3f593-46b2-48c3-b8cf-f5ed21242709 7fe112286eeaa5796392b8caaa80e212 {"aliquot_tag": "ALQ_f2f8eaa6", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.miRNA-Seq.T.hg38 C3L-01330 LUAD miRNA-Seq tumor CPT0083390010 ae2442d3-78c2-430c-9169-37e1298be8c1_mirnaseq_gdc_realn.bam 270474251 BAM harmonized CPTAC3 57a2d059-d437-40f0-8053-0e1a5fbb7c2d 9088ab596785ef23e2cf7153ceac3580 {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor"} -C3L-01330.RNA-Seq.chimeric.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.chimeric.gdc_realn.bam 98096619 BAM chimeric harmonized CPTAC3 0ef08e7d-2510-44e9-bdc9-97d22649a6ef 0e7cf791608b73ac8800da2619cbe472 {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.RNA-Seq.chimeric.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.chimeric.gdc_realn.bam 51268071 BAM chimeric harmonized CPTAC3 c3e97123-df6f-46f0-a19e-602e821942e0 193aabb71744adfadb82bf5d6ec2e8b5 {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor"} -C3L-01330.RNA-Seq.genomic.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.genomic.gdc_realn.bam 8097589480 BAM genomic harmonized CPTAC3 167e253d-3971-4b0b-8280-9750d8429ca0 362fd09229cd64a815e50b38f64cf44b {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.RNA-Seq.genomic.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.genomic.gdc_realn.bam 7597482780 BAM genomic harmonized CPTAC3 6a70e252-3c2e-4a86-af4a-24347b7d96ff dba4970b248a9ffa0746ec35fbbe4fca {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor"} -C3L-01330.RNA-Seq.S19_L005_R1.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3906878362 FASTQ S19_L005_R1 unaligned CPTAC3 2253d6b5-fa0e-423d-91f6-91a89072f35e 5c9527c46df65690ba274dff6d2d04cd {"aliquot_tag": "ALQ_f2f8eaa6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.RNA-Seq.S19_L005_R2.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R2_001.fastq.gz 4345483539 FASTQ S19_L005_R2 unaligned CPTAC3 b104ca9a-741d-4e71-b3bc-9a26a9cd6db1 7a4df832ce0d016c9fad40f19d41f4a8 {"aliquot_tag": "ALQ_f2f8eaa6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.RNA-Seq.S7_L002_R1.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3486312091 FASTQ S7_L002_R1 unaligned CPTAC3 d6b0d5a1-ca0a-40f6-8339-8652aab7a234 9d74e88f66c1945a3598a0d599e0f8a2 {"aliquot_tag": "ALQ_68557f7b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01330.RNA-Seq.S7_L002_R2.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 3818273723 FASTQ S7_L002_R2 unaligned CPTAC3 15dc97a0-f911-4f6d-ad2d-97be1e037095 7b23e63fc3b0ec35faffe123d9dd189a {"aliquot_tag": "ALQ_68557f7b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01330.RNA-Seq.transcriptome.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.transcriptome.gdc_realn.bam 9274754717 BAM transcriptome harmonized CPTAC3 9491022f-4097-478f-b029-0c26078e61b9 351d3380f1e72ef7d73a3ee1c11e5975 {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.RNA-Seq.transcriptome.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.transcriptome.gdc_realn.bam 8622090820 BAM transcriptome harmonized CPTAC3 6426e075-6df1-473d-9478-dba0b016c769 3f41d46e5126bdbd8be615f428d5ad95 {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor"} -C3L-01330.WGS.A C3L-01330 LUAD WGS tissue_normal CPT0083420009 CPT0083420009.WholeGenome.RP-1303.bam 53911713193 BAM aligned CPTAC3 a3c71cce-a36b-4a68-8f44-d6c96d1a7e6d 76a5cc7bcabf49b4b50d5ac768f066d8 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.WGS.A.hg38 C3L-01330 LUAD WGS tissue_normal CPT0083420009 6bab03bf-7fa4-4ae3-8554-97dd689f7270_wgs_gdc_realn.bam 80989491801 BAM harmonized CPTAC3 8e2830fc-e09d-4efb-a6fa-c017609373a7 0d1b0f9b7ca1c49ab249031b7a51f484 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.WGS.N C3L-01330 LUAD WGS blood_normal CPT0081800001 CPT0081800001.WholeGenome.RP-1303.bam 73117793685 BAM aligned CPTAC3 91381ec2-87b3-4c81-8392-8f83ed6fff9f 8a9a24d00d13f027bb5214272b98fb68 {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal"} -C3L-01330.WGS.N.hg38 C3L-01330 LUAD WGS blood_normal CPT0081800001 845737d4-d42e-46e9-bf0d-6679c70156c2_gdc_realn.bam 109286955067 BAM harmonized CPTAC3 2f32ee67-a737-4c5a-b786-9c32514f0ad4 b586e79cadf1b55629af6bd839035c4c {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal"} -C3L-01330.WGS.T C3L-01330 LUAD WGS tumor CPT0083390007 CPT0083390007.WholeGenome.RP-1303.bam 85247928288 BAM aligned CPTAC3 5ce55ca6-525e-4ca5-84c4-a512b7a0f9db 362ad4bd9714b85b4f1bad82672ddf69 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor"} -C3L-01330.WGS.T.hg38 C3L-01330 LUAD WGS tumor CPT0083390007 593a72ce-4932-42bd-b701-d62a7220ee4f_gdc_realn.bam 128008303471 BAM harmonized CPTAC3 516252fe-c547-437e-8df9-b8aca24870ea 4d1f9684f6dd6a2260fe19d7a81dda11 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor"} -C3L-01330.WXS.A C3L-01330 LUAD WXS tissue_normal CPT0083420009 CPT0083420009.WholeExome.RP-1303.bam 30717519389 BAM aligned CPTAC3 ddd75610-48a0-48e9-ae1f-f07cfcb52628 5446fe937b35d67566421ad58bfdd339 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.WXS.A.hg38 C3L-01330 LUAD WXS tissue_normal CPT0083420009 6bab03bf-7fa4-4ae3-8554-97dd689f7270_wxs_gdc_realn.bam 42008059950 BAM harmonized CPTAC3 91d991b0-7b23-47d3-b331-fff02de35f91 13408aa85a1fa9966b87dccfc594d45a {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01330.WXS.N C3L-01330 LUAD WXS blood_normal CPT0081800001 CPT0081800001.WholeExome.RP-1303.bam 24224823633 BAM aligned CPTAC3 cd0a3946-ef66-4f19-91e2-8a89868d229d 1e3dfd8ebfc311d41fac78f0b3c7e967 {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal"} -C3L-01330.WXS.N.hg38 C3L-01330 LUAD WXS blood_normal CPT0081800001 845737d4-d42e-46e9-bf0d-6679c70156c2_gdc_realn.bam 32739288707 BAM harmonized CPTAC3 b2a0c4ca-7c82-4d36-bc9a-7dd28ec4f7b9 8cc68d246dd8d857c4277358a75e1d65 {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal"} -C3L-01330.WXS.T C3L-01330 LUAD WXS tumor CPT0083390007 CPT0083390007.WholeExome.RP-1303.bam 29053272817 BAM aligned CPTAC3 ebc57c90-a04c-4d03-8d53-310074283237 12723505ade9526183c0ab73f0bb8027 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor"} -C3L-01330.WXS.T.hg38 C3L-01330 LUAD WXS tumor CPT0083390007 593a72ce-4932-42bd-b701-d62a7220ee4f_gdc_realn.bam 39865882180 BAM harmonized CPTAC3 88b8007a-10b1-4e99-954b-2e99921214bb c3a30c50b26d0c67f734e457bfce02ea {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor"} -C3L-01352.MethArray.Green.T C3L-01352 CCRCC Methylation_Array tumor CPT0071150010 202184990069_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 14108a35-d9dd-4954-af0a-fc3f842a1f32 8dae5d0689dbbe0ad65dcc25a840d896 {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor"} -C3L-01352.MethArray.Red.T C3L-01352 CCRCC Methylation_Array tumor CPT0071150010 202184990069_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6bc71a50-de58-411c-a3ff-a5b181b1d679 23cfb41f4bfcc7959ba85571c8be7304 {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor"} -C3L-01352.miRNA-Seq.S33_L007_R1.T C3L-01352 CCRCC miRNA-Seq tumor CPT0071150007 181012_UNC32-K00270_0124_AH223CBBXY_CTTGTA_S33_L007_R1_001.unaln.bam 271742881 BAM S33_L007_R1 unaligned CPTAC3 376cd891-acfe-4464-9d73-89f8489b29d9 41e3e62040286f1bcd363ace38fd6a85 {"aliquot_tag": "ALQ_29ad9416", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01352.miRNA-Seq.T.hg38 C3L-01352 CCRCC miRNA-Seq tumor CPT0071150007 35f853c0-d953-4408-814c-72c5ef86ff9b_mirnaseq_gdc_realn.bam 300657639 BAM harmonized CPTAC3 9208dc62-31ea-4b18-95ba-74cd33acd407 87fe5d1140bd54de7fbefbbe5e3f7ddc {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor"} -C3L-01352.RNA-Seq.chimeric.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.chimeric.gdc_realn.bam 94465062 BAM chimeric harmonized CPTAC3 948b8676-dc41-42b0-9f89-a36897d45ee8 a25e69f8979ce44b200c4dd79bd18f0c {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor"} -C3L-01352.RNA-Seq.genomic.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.genomic.gdc_realn.bam 7861795197 BAM genomic harmonized CPTAC3 e031a800-6f71-460a-afa1-860ddc304a3b d6373c4e1c58d9bb3daccd97a6cdab3e {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor"} -C3L-01352.RNA-Seq.S21_L007_R1.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R1_001.fastq.gz 4028105922 FASTQ S21_L007_R1 unaligned CPTAC3 22ee7030-3274-461a-941b-04ab673308f8 d882364856508783318d3b707e693b30 {"aliquot_tag": "ALQ_29ad9416", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01352.RNA-Seq.S21_L007_R2.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R2_001.fastq.gz 4308194705 FASTQ S21_L007_R2 unaligned CPTAC3 8d9def8e-edcc-46fe-ad1a-246d5e8d6e82 8ea359967697730c23a9d1299897159a {"aliquot_tag": "ALQ_29ad9416", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01352.RNA-Seq.transcriptome.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.transcriptome.gdc_realn.bam 11753340601 BAM transcriptome harmonized CPTAC3 9b3da46e-7754-4e3a-9d05-64739bc6b29c 8e6fa6bd261427e7def78007612fde4f {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor"} -C3L-01352.WGS.N C3L-01352 CCRCC WGS blood_normal CPT0071980002 CPT0071980002.WholeGenome.RP-1303.bam 61487552634 BAM aligned CPTAC3 8b3feb25-5077-4529-81ef-f1ea352c4c1d 5b8937b72c49da7a07a4a6ec5546844a {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal"} -C3L-01352.WGS.N.hg38 C3L-01352 CCRCC WGS blood_normal CPT0071980002 3268319a-ab4b-47bb-ad7f-bb2aa22d92c5_gdc_realn.bam 93021309930 BAM harmonized CPTAC3 e1794f91-7fab-4a26-a71f-500a69109dd8 74eb8801cacac0117494bd479096ea8a {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal"} -C3L-01352.WGS.T C3L-01352 CCRCC WGS tumor CPT0071150010 CPT0071150010.WholeGenome.RP-1303.bam 69607051479 BAM aligned CPTAC3 1eff860e-449b-4f19-987c-8736e3ac0050 ac2c7c390b443bb31378cc1991e8086d {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor"} -C3L-01352.WGS.T.hg38 C3L-01352 CCRCC WGS tumor CPT0071150010 01390bfe-15c8-4608-9785-7f9d51990f6c_gdc_realn.bam 105489621672 BAM harmonized CPTAC3 dcf55fde-e9f3-4ccd-9971-e97570a1d43e 5c540521f638ecbe5585df63bf2edcfd {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor"} -C3L-01352.WXS.N C3L-01352 CCRCC WXS blood_normal CPT0071980002 CPT0071980002.WholeExome.RP-1303.bam 32350824470 BAM aligned CPTAC3 4484d0df-7717-48a3-9cf3-3956651bec7a 781546a2565e3da356d6334f5efc482d {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal"} -C3L-01352.WXS.N.hg38 C3L-01352 CCRCC WXS blood_normal CPT0071980002 3268319a-ab4b-47bb-ad7f-bb2aa22d92c5_gdc_realn.bam 43822799988 BAM harmonized CPTAC3 cb9822ae-c9a9-46ee-aef6-30addbcc01fa 91eff4310e8dd4bba638558f3cacf964 {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal"} -C3L-01352.WXS.T C3L-01352 CCRCC WXS tumor CPT0071150010 CPT0071150010.WholeExome.RP-1303.bam 39999661126 BAM aligned CPTAC3 2bde7340-b645-4af2-9ce4-838144ba8e67 3ddd593b7f3aed6b2c5e80314af8c6ac {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor"} -C3L-01352.WXS.T.hg38 C3L-01352 CCRCC WXS tumor CPT0071150010 01390bfe-15c8-4608-9785-7f9d51990f6c_gdc_realn.bam 56134206583 BAM harmonized CPTAC3 d4b55f23-23ae-4a7f-9fb3-50607c36436f 679466854def2259e0f22579110abe9d {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor"} -C3L-01355.MethArray.Green.T C3L-01355 UCEC Methylation_Array tumor CPT0083580006 202184900110_R08C01_Grn.idat 13676256 IDAT Green NA CPTAC3 e26b86eb-d469-463d-aa18-83153d02cef8 2b15ca8c51a08af40c233f832e3a90d1 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01355.MethArray.Red.T C3L-01355 UCEC Methylation_Array tumor CPT0083580006 202184900110_R08C01_Red.idat 13676256 IDAT Red NA CPTAC3 4442ddbb-827e-40e3-ae49-4c482a5b8469 b51ab62e6d3cad26d1e007f1a152e319 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01355.miRNA-Seq.S11_L008_R1.T C3L-01355 UCEC miRNA-Seq tumor CPT0083580013 181108_UNC31-K00269_0163_BH23TVBBXY_GGCTAC_S11_L008_R1_001.unaln.bam 178699422 BAM S11_L008_R1 unaligned CPTAC3 c8ee366b-11de-42f5-904b-b9bbb94a9aaf ddb3d51a56cf18ddb3805d7f3b8dde25 {"aliquot_tag": "ALQ_1a65e46c", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01355.miRNA-Seq.T.hg38 C3L-01355 UCEC miRNA-Seq tumor CPT0083580013 7085c267-55fe-4e9f-8a05-b54de98594e6_mirnaseq_gdc_realn.bam 195925602 BAM harmonized CPTAC3 83e075a3-fc5f-4bf1-a719-74edeea36539 ef85b229d81fe1aeb39371d4f4cbd8f0 {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.chimeric.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.chimeric.gdc_realn.bam 36090080 BAM chimeric harmonized CPTAC3 25b0264d-607a-4bd9-91b0-506015b2886d 74bae35b808b30d5fb44c026f7fc3369 {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.chimeric.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.chimeric.gdc_realn.bam 81495737 BAM chimeric harmonized CPTAC3 61505e17-4e3a-460b-9092-4c597ad72e31 192eccf81564230e55152d4a1e85c124 {"aliquot_tag": "ALQ_ae142bae", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.genomic.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.genomic.gdc_realn.bam 7742458443 BAM genomic harmonized CPTAC3 5d1447a6-ebd3-4546-a05c-18e751ba6d05 e09ddfb88872f3fc0663f1631286507d {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.genomic.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.genomic.gdc_realn.bam 4437674831 BAM genomic harmonized CPTAC3 fd5f4068-db5e-4a8b-aef5-1a9c3637e4be eb274a60c0f745d50b9d9ebbfcb8061e {"aliquot_tag": "ALQ_ae142bae", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.S17_L007_R1.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R1_001.fastq.gz 4204285748 FASTQ S17_L007_R1 unaligned CPTAC3 864ac672-b31c-41c7-a472-f6ca7977e107 923a7e9f350cc83d472ba8accf9ae0eb {"aliquot_tag": "ALQ_1a65e46c", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.S17_L007_R2.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R2_001.fastq.gz 4378833707 FASTQ S17_L007_R2 unaligned CPTAC3 aa9b3c1e-498b-4e3e-8bb3-1242ba69dac3 1e853117bc13d0518aa7bf8e14d8bfaf {"aliquot_tag": "ALQ_1a65e46c", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.S56_R1.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R1_001.fastq.gz 2525735226 FASTQ S56_R1 unaligned CPTAC3 acd51a1a-6e7b-49ef-ac8b-80c28a6f3822 2efb6b4eb4ece9b9b05f5b1dd79b6c45 {"aliquot_tag": "ALQ_ae142bae", "sample": "S56", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.S56_R2.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R2_001.fastq.gz 2582486984 FASTQ S56_R2 unaligned CPTAC3 11d10042-d46f-4f41-a373-ff51eed11d6a e5195587823a70b3e0a90c061158173c {"aliquot_tag": "ALQ_ae142bae", "sample": "S56", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.transcriptome.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.transcriptome.gdc_realn.bam 10997884589 BAM transcriptome harmonized CPTAC3 d93e1d6e-8e28-41a6-b3da-37b5990af0a3 5deb9fbda416e39c4b6b935a7a401d66 {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor"} -C3L-01355.RNA-Seq.transcriptome.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.transcriptome.gdc_realn.bam 1809595174 BAM transcriptome harmonized CPTAC3 378645e2-8fc0-4c8b-97fc-a3976bbb0484 1796d079ccac41edcab7ef6198aeaabb {"aliquot_tag": "ALQ_ae142bae", "gdc_sample_type": "Primary Tumor"} -C3L-01355.WGS.N C3L-01355 UCEC WGS blood_normal CPT0081810002 CPT0081810002.WholeGenome.RP-1303.bam 72208884210 BAM aligned CPTAC3 a8a8600a-34d9-4693-865a-6ae8957ccbab 1110ae6806d1c7d6436864fc1a0d07c8 {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01355.WGS.N.hg38 C3L-01355 UCEC WGS blood_normal CPT0081810002 38f93d50-f23b-4b2c-9add-b7a8b225357b_gdc_realn.bam 107263824204 BAM harmonized CPTAC3 c683c8b1-6683-46a0-b7a3-43c153a8ef5c b161a8c374d72975ca99366da3637c81 {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01355.WGS.T C3L-01355 UCEC WGS tumor CPT0083580006 CPT0083580006.WholeGenome.RP-1303.bam 64473052121 BAM aligned CPTAC3 89fdecb0-51f2-45c5-bade-23f61f62b677 7f0fca1a7f0b0027344af085905b8658 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01355.WGS.T.hg38 C3L-01355 UCEC WGS tumor CPT0083580006 b11dd0cb-f42c-4c2e-87af-aedc2e5f8272_gdc_realn.bam 96346291928 BAM harmonized CPTAC3 c6e73847-d928-4be5-9688-e38ae6742870 ac9abb95f20659e9c397869313b1ec3f {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01355.WXS.N C3L-01355 UCEC WXS blood_normal CPT0081810002 CPT0081810002.WholeExome.RP-1303.bam 31253657004 BAM aligned CPTAC3 db4b3c08-5c98-497f-9127-bb31a5620db4 54c3558388306c8437795a9fa110d89c {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01355.WXS.N.hg38 C3L-01355 UCEC WXS blood_normal CPT0081810002 38f93d50-f23b-4b2c-9add-b7a8b225357b_gdc_realn.bam 42743830072 BAM harmonized CPTAC3 ac192f91-2c4f-4a62-a243-1a6c2e120380 70b4f79537dc07d03069a509744bbc11 {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01355.WXS.T C3L-01355 UCEC WXS tumor CPT0083580006 CPT0083580006.WholeExome.RP-1303.bam 30346724366 BAM aligned CPTAC3 fb594274-f82d-42c0-b1ad-a23f14319a36 70beaed118534893aa702ec5827a50d1 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01355.WXS.T.hg38 C3L-01355 UCEC WXS tumor CPT0083580006 b11dd0cb-f42c-4c2e-87af-aedc2e5f8272_gdc_realn.bam 40577707227 BAM harmonized CPTAC3 565ab56b-fe08-49b2-92cd-8666c15dc61f 229dd64b9388ec51059c6371b9924f37 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01425.MethArray.Green.Tbm C3L-01425 AML Methylation_Array tumor_bone_marrow CPT0274230002 205555380130_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fc129fa4-defc-41d9-9f13-baf89e165ebb 37482e01e07e920ff5c9121d031a4167 {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.MethArray.Red.Tbm C3L-01425 AML Methylation_Array tumor_bone_marrow CPT0274230002 205555380130_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 01a1a579-eae0-45d8-8a48-2db566a227b0 f8e81688a7346e00c3f4c5ddbef346a8 {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.miRNA-Seq.S5_L001_R1.Tbm C3L-01425 AML miRNA-Seq tumor_bone_marrow CPT0274240002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L001_R1_001.unaln.bam 192936481 BAM S5_L001_R1 unaligned CPTAC3 9358392d-dfaf-40ef-b45c-94157adec7b7 8e817df7963ed0cbc03c24fe97f5ff99 {"aliquot_tag": "ALQ_9efd3ca6", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.miRNA-Seq.Tbm.hg38 C3L-01425 AML miRNA-Seq tumor_bone_marrow CPT0274240002 fb218c91-d107-49bb-ad62-a86b30f3517a_mirnaseq_gdc_realn.bam 212839610 BAM harmonized CPTAC3 0633e282-be72-4001-a15e-d59db46233b0 e95fc10c11508834b14b61ef22bf1b97 {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.RNA-Seq.chimeric.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.chimeric.gdc_realn.bam 51555637 BAM chimeric harmonized CPTAC3 8f626e89-02bc-46c5-bacf-fd5febe43938 8d092dd8c546404eb3203d79add93125 {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.RNA-Seq.genomic.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.genomic.gdc_realn.bam 8290250700 BAM genomic harmonized CPTAC3 35362d20-50a1-41df-8d01-2d6f7c8bcb93 b4b3ad13ecf52b4495870e72ad7a845c {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.RNA-Seq.S62_L008_R1.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R1_001.fastq.gz 3746499264 FASTQ S62_L008_R1 unaligned CPTAC3 4d5c2e00-b36f-4fa5-8b86-888dce250da2 79a7c28e97103dbefa149b94c968bef7 {"aliquot_tag": "ALQ_9efd3ca6", "sample": "S62", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.RNA-Seq.S62_L008_R2.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R2_001.fastq.gz 4281876354 FASTQ S62_L008_R2 unaligned CPTAC3 e7d86046-cfb4-4b3b-b891-c28b1571226e ae2907da366c10ffeadf70ff7faf10d4 {"aliquot_tag": "ALQ_9efd3ca6", "sample": "S62", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.RNA-Seq.transcriptome.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.transcriptome.gdc_realn.bam 7699137357 BAM transcriptome harmonized CPTAC3 14f8c8bc-e5de-4e34-ad81-8ee90d981a32 a13cb5a974dfe4f009e6309835f10dfe {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.WGS.Nbc C3L-01425 AML WGS buccal_normal CPT0274300002 CPT0274300002.WholeGenome.RP-2158.bam 62074873853 BAM aligned CPTAC3 d946a253-44d8-4c7b-bd21-0dc5960c0ec1 ef1735d4e54e9b849b72b0f205543fea {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01425.WGS.Nbc.hg38 C3L-01425 AML WGS buccal_normal CPT0274300002 09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wgs_gdc_realn.bam 210091772785 BAM harmonized CPTAC3 3289b16b-0383-4ece-914c-5ae5fa903955 e949c9dd89b7c0c5fbbffcd96dfcda39 {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01425.WGS.Tbm C3L-01425 AML WGS tumor_bone_marrow CPT0274230002 CPT0274230002.WholeGenome.RP-2158.bam 50386399339 BAM aligned CPTAC3 a1185370-8fe3-49e6-a4d3-358a846227a2 193be1b828217a4b61f3f226d733847a {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.WGS.Tbm.hg38 C3L-01425 AML WGS tumor_bone_marrow CPT0274230002 e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wgs_gdc_realn.bam 152059527928 BAM harmonized CPTAC3 3634e8ee-419e-422b-a492-b63f07b3840a 7836e6dad357bba9d57888eaf5a1535d {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.WXS.Nbc C3L-01425 AML WXS buccal_normal CPT0274300002 CPT0274300002.WholeExome.RP-1303.bam 40847720232 BAM aligned CPTAC3 4993a91a-acfc-496b-b990-fa96274c1c66 8a2fcd56841da0c64adb88fa29bb8fff {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01425.WXS.Nbc.hg38 C3L-01425 AML WXS buccal_normal CPT0274300002 09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wxs_gdc_realn.bam 56301198713 BAM harmonized CPTAC3 0beb5388-ac5c-42d6-afc4-478ba0a192d0 18b007c281a12b6ccdb209efc2080d23 {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01425.WXS.Tbm C3L-01425 AML WXS tumor_bone_marrow CPT0274230002 CPT0274230002.WholeExome.RP-1303.bam 51575026777 BAM aligned CPTAC3 1b173ed7-cf59-4cd1-8bcc-c2508f4a44ef 99ef2003503a055f8e54e48a58967fde {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01425.WXS.Tbm.hg38 C3L-01425 AML WXS tumor_bone_marrow CPT0274230002 e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wxs_gdc_realn.bam 72395346430 BAM harmonized CPTAC3 1089fe15-b965-4a52-8fbe-c43ac6fdab80 6a25d25d47f51b089424dc71cf88b04a {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01426.MethArray.Green.Tpb C3L-01426 AML Methylation_Array tumor_peripheral_blood CPT0284650002 205987780094_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 cf4d30f0-f95d-4e99-b079-4f9cc4ed75ce cb22d08cb8868c30b3a40926555e6fba {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.MethArray.Red.Tpb C3L-01426 AML Methylation_Array tumor_peripheral_blood CPT0284650002 205987780094_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 3119403c-fc14-4ee5-a1ca-bfb840a78d5e e2b34d647f7b4ed586fbd4374ec03094 {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.miRNA-Seq.S5_L001_R1.Tpb C3L-01426 AML miRNA-Seq tumor_peripheral_blood CPT0284660002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGGCG_S5_L001_R1_001.unaln.bam 226938523 BAM S5_L001_R1 unaligned CPTAC3 9e900849-381e-47ea-8126-b12952f6ebd6 ee0173e9489a88dd82f9806a03fabf2e {"aliquot_tag": "ALQ_a68c3f7c", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.miRNA-Seq.Tpb.hg38 C3L-01426 AML miRNA-Seq tumor_peripheral_blood CPT0284660002 58cdb69a-8732-4879-a59c-6c9cec72ecb2_mirnaseq_gdc_realn.bam 245138572 BAM harmonized CPTAC3 86be831c-6f39-46fa-a21d-4a7c191cdbf5 3d0b391a22aff5c3f98676274085c808 {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.RNA-Seq.chimeric.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.chimeric.gdc_realn.bam 283168028 BAM chimeric harmonized CPTAC3 a13c6e4e-18e8-4d5c-8f33-7abe83673e81 515afb84d43dd67dea3e86b938c7e67d {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.RNA-Seq.genomic.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.genomic.gdc_realn.bam 7504924340 BAM genomic harmonized CPTAC3 31d09381-5988-47a9-b430-6a91bd4d59b3 3ce6f241a844f4b8e4c9bb0c39a8bf3b {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.RNA-Seq.S3_L001_R1.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R1_001.fastq.gz 3181868063 FASTQ S3_L001_R1 unaligned CPTAC3 8968ac3f-af34-49ac-bda9-abfc9b0e6373 ce02dffddecb3732cd3ae4b802013210 {"aliquot_tag": "ALQ_a68c3f7c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.RNA-Seq.S3_L001_R2.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R2_001.fastq.gz 3581567319 FASTQ S3_L001_R2 unaligned CPTAC3 fe29e9a1-2fc3-4f7d-a588-d6a803878000 36d7c0f424e6cd19c0dbc5e2af66a0ba {"aliquot_tag": "ALQ_a68c3f7c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.RNA-Seq.transcriptome.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.transcriptome.gdc_realn.bam 9573441156 BAM transcriptome harmonized CPTAC3 00c1d202-c4b5-483e-8c2f-59f53b5dd802 49923519a076f1ef8fe8133b64aacb7c {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.WGS.Nbc C3L-01426 AML WGS buccal_normal CPT0284710001 CPT0284710001.WholeGenome.RP-2158.bam 50194555609 BAM aligned CPTAC3 4e0d3d0a-58e1-4a97-960f-ace505493569 54662c220d4adb94bf64c7e76aa7e201 {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01426.WGS.Nbc.hg38 C3L-01426 AML WGS buccal_normal CPT0284710001 d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wgs_gdc_realn.bam 151915395331 BAM harmonized CPTAC3 d6162a5c-7200-4643-ad34-2f17276ad642 8cd265d2705abe514a772f4305a89a8a {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01426.WGS.Tpb C3L-01426 AML WGS tumor_peripheral_blood CPT0284650002 CPT0284650002.WholeGenome.RP-2158.bam 40851704572 BAM aligned CPTAC3 303de2ae-ea0b-4686-9934-409f3408e8a5 b36b3de45cff1c9f57ad34ec2cbfb533 {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.WGS.Tpb.hg38 C3L-01426 AML WGS tumor_peripheral_blood CPT0284650002 0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wgs_gdc_realn.bam 123766292830 BAM harmonized CPTAC3 600534ec-3fd0-420d-9d39-45bf59abea96 9b3db6128aa8c6322111ebe55e60fe45 {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.WXS.Nbc C3L-01426 AML WXS buccal_normal CPT0284710001 CPT0284710001.WholeExome.RP-1303.bam 27252005698 BAM aligned CPTAC3 bc33252a-2427-4340-840e-321f869c4272 6ed100c19f1b48df69f42a7c0322468f {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01426.WXS.Nbc.hg38 C3L-01426 AML WXS buccal_normal CPT0284710001 d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wxs_gdc_realn.bam 36774705127 BAM harmonized CPTAC3 fd8ed386-d649-451f-bc9d-c3f7122c67d4 aa59eed52efa807a72652a391637072f {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01426.WXS.Tpb C3L-01426 AML WXS tumor_peripheral_blood CPT0284650002 CPT0284650002.WholeExome.RP-1303.bam 25186131845 BAM aligned CPTAC3 c29afc3d-4702-4aff-8d7c-76e05dd9aaf6 21f7488a3e7fcc324dac5ecc6964765b {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01426.WXS.Tpb.hg38 C3L-01426 AML WXS tumor_peripheral_blood CPT0284650002 0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wxs_gdc_realn.bam 34689978278 BAM harmonized CPTAC3 47de7679-eeae-4887-9f0d-948efbe6eb3e 70076f6f667b56045057a6ff48ee903a {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.MethArray.Green.Tpb C3L-01427 AML Methylation_Array tumor_peripheral_blood CPT0275410002 205987780094_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e839fca1-4f3f-48d9-98a0-cd31e19d0fed f6c68eae91703cf3c3e238f1458e74e4 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.MethArray.Red.Tpb C3L-01427 AML Methylation_Array tumor_peripheral_blood CPT0275410002 205987780094_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 deb0eb13-4caf-4ff5-9501-9068f34b3699 351db33d6f26d0ba4c3f686484ecd99f {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.miRNA-Seq.S6_L001_R1.Tpb C3L-01427 AML miRNA-Seq tumor_peripheral_blood CPT0275430002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L001_R1_001.unaln.bam 201593405 BAM S6_L001_R1 unaligned CPTAC3 5c32f9dd-27ac-4985-a009-0b729eb323f0 2c012983a0ecc1d2cf1db655bc1d4d5b {"aliquot_tag": "ALQ_5cf3081f", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.miRNA-Seq.Tpb.hg38 C3L-01427 AML miRNA-Seq tumor_peripheral_blood CPT0275430002 b5278fdd-0909-4723-95ca-71f8809bba4a_mirnaseq_gdc_realn.bam 216865124 BAM harmonized CPTAC3 11396689-7b80-4245-ac54-bc978ca7e9ed 854ae17acf817526d7e5e47379d25aa3 {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.RNA-Seq.chimeric.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.chimeric.gdc_realn.bam 554449558 BAM chimeric harmonized CPTAC3 e9655a39-6841-4039-b75f-e5d8023e6f49 0ff636ba1f22e2f87188f8688f99fcac {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.RNA-Seq.genomic.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.genomic.gdc_realn.bam 9362616231 BAM genomic harmonized CPTAC3 313c0d92-b237-4dd9-89d4-42b8c830c644 6b0277de6d346bf86093da49a5f7681e {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.RNA-Seq.S1_L001_R1.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R1_001.fastq.gz 4438127361 FASTQ S1_L001_R1 unaligned CPTAC3 7874f5f7-1f87-491e-9daa-b1367b31131e c7a65f6270a55da3a96ef29faf025c14 {"aliquot_tag": "ALQ_5cf3081f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.RNA-Seq.S1_L001_R2.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R2_001.fastq.gz 4801249773 FASTQ S1_L001_R2 unaligned CPTAC3 28292aa9-7a99-4b48-9e8a-dcc7410d30f9 33b4ed659cfa735ca9caa916207f410e {"aliquot_tag": "ALQ_5cf3081f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.RNA-Seq.transcriptome.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.transcriptome.gdc_realn.bam 10628196789 BAM transcriptome harmonized CPTAC3 e6fc1eb4-2ca4-4674-a344-01fe2f87451b 727b5dbdf6e5f46c79117cdbec9d648a {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.WGS.Nbc C3L-01427 AML WGS buccal_normal CPT0274390002 CPT0274390002.WholeGenome.RP-2158.bam 47139336118 BAM aligned CPTAC3 b067252c-e827-48f8-8eca-642918057770 91a3881fc13ebbc6482ee67ed6414706 {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01427.WGS.Nbc.hg38 C3L-01427 AML WGS buccal_normal CPT0274390002 3a131fec-e5c3-4f69-a650-79f405d9122f_wgs_gdc_realn.bam 145700879645 BAM harmonized CPTAC3 769c53ae-858c-4c6f-b0b5-4733b5d3be14 6370f08f7ef6f7d074ae7a5ef73b808f {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01427.WGS.Tpb C3L-01427 AML WGS tumor_peripheral_blood CPT0275410002 CPT0275410002.WholeGenome.RP-2158.bam 44251140875 BAM aligned CPTAC3 d3705a16-00aa-4ab7-9bdb-3af2fe58efb2 8e1dd06cf44e467e9b6f5b037ff91e84 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.WGS.Tpb.hg38 C3L-01427 AML WGS tumor_peripheral_blood CPT0275410002 cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wgs_gdc_realn.bam 130747771504 BAM harmonized CPTAC3 4e6e8a93-e0e6-4259-9227-345d4526b521 e1ca9dd3dd6e4a0691b82a52c89b9d31 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.WXS.Nbc C3L-01427 AML WXS buccal_normal CPT0274390002 CPT0274390002.WholeExome.RP-1303.bam 23949907101 BAM aligned CPTAC3 3ee4eebd-452c-443a-91d9-600cf32edc43 3ce4f0337716e348a041e0f8539aafc2 {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01427.WXS.Nbc.hg38 C3L-01427 AML WXS buccal_normal CPT0274390002 3a131fec-e5c3-4f69-a650-79f405d9122f_wxs_gdc_realn.bam 34638950956 BAM harmonized CPTAC3 c9de71de-5b62-4097-b051-80bc9e639eec 0c10ea3946e06e235ae0f545784ac495 {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01427.WXS.Tpb C3L-01427 AML WXS tumor_peripheral_blood CPT0275410002 CPT0275410002.WholeExome.RP-1303.bam 26955710136 BAM aligned CPTAC3 1ffb9452-dd02-474e-b861-a4a979a17887 d33652c693820578bf9c7e7ec2d6edb2 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01427.WXS.Tpb.hg38 C3L-01427 AML WXS tumor_peripheral_blood CPT0275410002 cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wxs_gdc_realn.bam 37273526505 BAM harmonized CPTAC3 272ef040-6001-45d8-8805-ae7028ab00ed 249653ad8393697d2c16fb1d01ec49c0 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01453.ADD_de1eff5b.MethArray.Green.T C3L-01453 PDA Methylation_Array tumor CPT0108400009 202234370119_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1761f611-bae6-46e7-b78a-08d3970f8efd ae863cf0469b9fa40261f6fc5a0d2566 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01453.ADD_de1eff5b.MethArray.Red.T C3L-01453 PDA Methylation_Array tumor CPT0108400009 202234370119_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 bfad5e5e-07eb-4e58-a472-2b436013f27e 3afcb931fcc347854e44236ce9f27e7e {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01453.ADD_de1eff5b.WGS.T C3L-01453 PDA WGS tumor CPT0108400009 CPT0108400009.WholeGenome.RP-1303.bam 68032391689 BAM aligned CPTAC3 fd9a1805-9250-4504-9779-f049675ed072 d68f211967ff6ba8fe3b05cc761f4a86 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01453.ADD_de1eff5b.WGS.T.hg38 C3L-01453 PDA WGS tumor CPT0108400009 4494960c-3f83-48f8-8cd8-265f77a5aaa6_wgs_gdc_realn.bam 99095446357 BAM harmonized CPTAC3 18f0a656-615a-417e-92b1-953fbfd4afd6 70ff4a1b09a4ee957488980726b40440 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01453.ADD_de1eff5b.WXS.T C3L-01453 PDA WXS tumor CPT0108400009 CPT0108400009.WholeExome.RP-1303.bam 30673538693 BAM aligned CPTAC3 3d2bb53e-b0a8-497c-ac5b-0ae1e8f14e77 3528aac2a1d97b58067a2ba89e396db7 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01453.ADD_de1eff5b.WXS.T.hg38 C3L-01453 PDA WXS tumor CPT0108400009 4494960c-3f83-48f8-8cd8-265f77a5aaa6_wxs_gdc_realn.bam 41048585017 BAM harmonized CPTAC3 42c0a07c-097d-46be-a3e7-185f8e91c8a9 32675fbd59876b4b6d7a22524ef746d5 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01453.miRNA-Seq.A.hg38 C3L-01453 PDA miRNA-Seq tissue_normal CPT0108410009 bea7c68d-6582-42af-a2cc-8943e5c8f07b_mirnaseq_gdc_realn.bam 257514526 BAM harmonized CPTAC3 5765fa1e-1ca3-4ef1-bfb1-d5f9fd22d598 c619cf656fd624d108bce264ef0e5c26 {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.miRNA-Seq.S15_L001_R1.A C3L-01453 PDA miRNA-Seq tissue_normal CPT0108410009 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L001_R1_001.unaln.bam 233520484 BAM S15_L001_R1 unaligned CPTAC3 d861a4f5-55af-497b-a82b-8928194cc44f 99063b49c1358df3da3d35baa8227e1f {"aliquot_tag": "ALQ_e37ed6eb", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.miRNA-Seq.S37_L003_R1.T C3L-01453 PDA miRNA-Seq tumor CPT0108400006 181119_UNC31-K00269_0165_AH27WCBBXY_AGTCAA_S37_L003_R1_001.unaln.bam 268638469 BAM S37_L003_R1 unaligned CPTAC3 32a4c03f-0e98-441e-ab8e-95f0f410cdd7 a196001647454d477c3461ecf6c0546f {"aliquot_tag": "ALQ_4ea1e2ca", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01453.miRNA-Seq.T.hg38 C3L-01453 PDA miRNA-Seq tumor CPT0108400006 f7551238-09df-4fe1-a946-b8b981e2a833_mirnaseq_gdc_realn.bam 292556040 BAM harmonized CPTAC3 d9493524-f5e8-4750-9ee4-66e091be72e9 3533f807673efef0b581cbe9fc0dcac0 {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor"} -C3L-01453.RNA-Seq.chimeric.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.chimeric.gdc_realn.bam 133319336 BAM chimeric harmonized CPTAC3 2e3d8141-1b6e-4b23-9b39-cd515cb7b190 1ca33fc5d82cdcf80242db735cf79e3e {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.RNA-Seq.chimeric.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.chimeric.gdc_realn.bam 74228570 BAM chimeric harmonized CPTAC3 8ffc4f11-c5a8-4e5e-9896-db046f6f4bd1 2ad923cb4934338b130869eea7bc40bb {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor"} -C3L-01453.RNA-Seq.genomic.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.genomic.gdc_realn.bam 10071949725 BAM genomic harmonized CPTAC3 79ac452b-2c22-4e9d-95d7-fb67ff5e690d 0e12c743788f027a18cdf6e750420ee7 {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.RNA-Seq.genomic.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.genomic.gdc_realn.bam 8166968229 BAM genomic harmonized CPTAC3 c6bf43b8-0abc-4b1f-8538-a9267edc3b56 48144bfc5cb066abfccdb04aea6b3cc6 {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor"} -C3L-01453.RNA-Seq.S18_L005_R1.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 4551298023 FASTQ S18_L005_R1 unaligned CPTAC3 f6205c77-f737-451c-875e-f652c4e5512d ba0a445e7ff01b6f111fc11d00ed9659 {"aliquot_tag": "ALQ_e37ed6eb", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.RNA-Seq.S18_L005_R2.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 5028019962 FASTQ S18_L005_R2 unaligned CPTAC3 3c23d217-08a0-4c70-87d6-a8f654143a21 7bfea299988b310ed6f5376147b68b00 {"aliquot_tag": "ALQ_e37ed6eb", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.RNA-Seq.S4_L007_R1.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R1_001.fastq.gz 3644119512 FASTQ S4_L007_R1 unaligned CPTAC3 c281e89f-9c99-416f-acec-621a455321c1 3f74154189f79fada7f54e0f2fe5582d {"aliquot_tag": "ALQ_4ea1e2ca", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01453.RNA-Seq.S4_L007_R2.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4098243447 FASTQ S4_L007_R2 unaligned CPTAC3 489b6a66-d9ad-4f86-8571-00e2aa811643 97f3e2d388a9b377512922fa23f5ffe9 {"aliquot_tag": "ALQ_4ea1e2ca", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01453.RNA-Seq.transcriptome.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.transcriptome.gdc_realn.bam 10762405173 BAM transcriptome harmonized CPTAC3 5fdd330f-73c7-4051-9133-cf962306ba18 c9693e79568540242277780c7b5cd0f7 {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.RNA-Seq.transcriptome.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.transcriptome.gdc_realn.bam 9692242266 BAM transcriptome harmonized CPTAC3 e4058a97-b71e-489c-838d-dcd3367942b4 d2ee31dbd93d09d8c959cdf724acafc3 {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor"} -C3L-01453.Targeted.T C3L-01453 PDA Targeted_Sequencing tumor CPT0108400009_1 CPT0108400009_1.CustomSelection.RP-1303.PDO-18786.bam 4060470419 BAM aligned CPTAC3 78e1f9ea-e48e-455f-951f-1449e5cccf23 959b8afaa1703662d21e32ea7b2799ae {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor"} -C3L-01453.Targeted.T.hg38 C3L-01453 PDA Targeted_Sequencing tumor CPT0108400009_1 9b68ed20-1ebc-417a-acb0-2c684a84c39c_targetedsequencing_gdc_realn.bam 5858496818 BAM harmonized CPTAC3 e7926789-8d0c-44f7-89b8-b83c18541ef6 91c842a7dc63c04f82d57d312f89e22b {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor"} -C3L-01453.WGS.A C3L-01453 PDA WGS tissue_normal CPT0108410006 CPT0108410006.WholeGenome.RP-1303.bam 65896731565 BAM aligned CPTAC3 c895e660-878a-4f02-bfeb-f2d801c884e6 88b4c06f24cbd0d9be4039402aa7ebbb {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.WGS.A.hg38 C3L-01453 PDA WGS tissue_normal CPT0108410006 b5c2ce79-efc4-4838-a64b-d10699c59075_wgs_gdc_realn.bam 96938177064 BAM harmonized CPTAC3 2f57bd77-2dce-4c3f-8eb4-b391d8f07345 df0e40f061e780cc6269c13291624bd1 {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.WGS.N C3L-01453 PDA WGS blood_normal CPT0108330002 CPT0108330002.WholeGenome.RP-1303.bam 73130536542 BAM aligned CPTAC3 67e40708-f6bb-4afd-b712-e4fcbb78567e fb20214de19c9b0464e515db7c9705b1 {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01453.WGS.N.hg38 C3L-01453 PDA WGS blood_normal CPT0108330002 dc6ce414-625c-4290-b5c9-b46f72582478_wgs_gdc_realn.bam 107577882836 BAM harmonized CPTAC3 cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d 841206d8299c2adb35cf2e05772fa6dc {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01453.WXS.A C3L-01453 PDA WXS tissue_normal CPT0108410006 CPT0108410006.WholeExome.RP-1303.bam 27503878831 BAM aligned CPTAC3 98532fec-93e1-4496-92cc-7fcb2d2a5170 e21a29220bbffab9ec3d583b6cc1d80e {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.WXS.A.hg38 C3L-01453 PDA WXS tissue_normal CPT0108410006 b5c2ce79-efc4-4838-a64b-d10699c59075_wxs_gdc_realn.bam 36755861699 BAM harmonized CPTAC3 caeb87d8-96b7-4a47-9065-1b68e6943418 b88d596d388c1c8ba0f984ff1cf84d77 {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01453.WXS.N C3L-01453 PDA WXS blood_normal CPT0108330002 CPT0108330002.WholeExome.RP-1303.bam 35080355508 BAM aligned CPTAC3 0dee4e23-e89c-4eb8-916d-c9d43276bb16 c3a7549f9f7c362b48b99b3be94e3de2 {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01453.WXS.N.hg38 C3L-01453 PDA WXS blood_normal CPT0108330002 dc6ce414-625c-4290-b5c9-b46f72582478_wxs_gdc_realn.bam 47787570422 BAM harmonized CPTAC3 587a23b3-2719-4158-9561-88037fd381a2 48c714ab125ed473acf2356fefb77182 {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01453.WXS.T C3L-01453 PDA WXS tumor CPT0108400009_1 CPT0108400009_1.WholeExome.RP-1303.bam 57007759908 BAM aligned CPTAC3 f24036e7-4034-429f-a129-bbaaeded4b41 b8bf55cdf5c105e2850e20760b6833f2 {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor"} -C3L-01453.WXS.T.hg38 C3L-01453 PDA WXS tumor CPT0108400009_1 9b68ed20-1ebc-417a-acb0-2c684a84c39c_wxs_gdc_realn.bam 76881888207 BAM harmonized CPTAC3 f15f08bf-e6a2-41f6-bafe-76f50b389ef6 bb508e58924894a2064b0e467418f5bd {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor"} -C3L-01455.MethArray.Green.A C3L-01455 LSCC Methylation_Array tissue_normal CPT0108600006 203220070157_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0c6af48c-d42d-421d-9464-f9042040a6a4 bd023000b4d7131002d232944cab797a {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.MethArray.Green.T C3L-01455 LSCC Methylation_Array tumor CPT0108560009 202234380069_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f27a0620-189e-492e-9f4b-ed13f2a24a01 d405a549efb312a1a5a9f6c181c1bd4b {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor"} -C3L-01455.MethArray.Red.A C3L-01455 LSCC Methylation_Array tissue_normal CPT0108600006 203220070157_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 3aa6a606-e750-4bba-855c-e9e5a1888690 a86b49b558b18f4359905aebbb9dd9a3 {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.MethArray.Red.T C3L-01455 LSCC Methylation_Array tumor CPT0108560009 202234380069_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 ef7029ba-dc99-435e-b2e7-37191af51b17 99e428832e8e9ee4c0c5db874960b129 {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor"} -C3L-01455.miRNA-Seq.A.hg38 C3L-01455 LSCC miRNA-Seq tissue_normal CPT0108600009 284507b5-32e7-4e2a-ba74-07d3ec53a487_mirnaseq_gdc_realn.bam 262480174 BAM harmonized CPTAC3 ce9a55ed-cbea-46dc-9398-c7e741814293 83c79e75c655fb5e62faa3fcac8cb7b4 {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.miRNA-Seq.S38_L003_R1.T C3L-01455 LSCC miRNA-Seq tumor CPT0108560006 181119_UNC31-K00269_0165_AH27WCBBXY_AGTTCC_S38_L003_R1_001.unaln.bam 210619484 BAM S38_L003_R1 unaligned CPTAC3 2502959c-aba5-46ef-bf26-4ad5a1ed7d33 d05773e8024bb54ffab6188f8f5486f7 {"aliquot_tag": "ALQ_abdc4cf", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01455.miRNA-Seq.S47_L006_R1.A C3L-01455 LSCC miRNA-Seq tissue_normal CPT0108600009 181113_UNC31-K00269_0164_AH23NNBBXY_GAGTGG_S47_L006_R1_001.unaln.bam 233263172 BAM S47_L006_R1 unaligned CPTAC3 4ad0a1fa-df15-4008-bd09-b41be5fd20e1 a45292bc7be960e504d69f4501223c52 {"aliquot_tag": "ALQ_93d65e50", "sample": "S47", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.miRNA-Seq.T.hg38 C3L-01455 LSCC miRNA-Seq tumor CPT0108560006 d40aab85-d14e-4420-a7b6-8c87cffdf9bf_mirnaseq_gdc_realn.bam 231010181 BAM harmonized CPTAC3 d7f3b2fd-501f-463b-80f6-108b6ac988e8 8bd83c4b1811443e37fa6ab9bafef4ae {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor"} -C3L-01455.RNA-Seq.chimeric.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.chimeric.gdc_realn.bam 43187413 BAM chimeric harmonized CPTAC3 158430a1-3d24-407e-82b7-c10bfee1b6c3 88fdb659b69dc9903ee228ea2b28ae1a {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.RNA-Seq.chimeric.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.chimeric.gdc_realn.bam 99210508 BAM chimeric harmonized CPTAC3 70d587de-64b4-49ec-8f83-bb6fdd4861bf 5d56a611ed5f6f93e93f0b62ec2568b9 {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor"} -C3L-01455.RNA-Seq.genomic.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.genomic.gdc_realn.bam 8576021050 BAM genomic harmonized CPTAC3 3beb7749-6b69-491c-920a-67c57ced9685 891c80c66ec858467bd1c97bd12d0641 {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.RNA-Seq.genomic.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.genomic.gdc_realn.bam 9837935642 BAM genomic harmonized CPTAC3 ba04ca77-3093-4e6a-8937-33c7dc072eae ad76afb78f9f1d0518501c8e9d55301b {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor"} -C3L-01455.RNA-Seq.S22_L006_R1.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 4042577316 FASTQ S22_L006_R1 unaligned CPTAC3 9f009ff0-5b5b-4355-9421-1d98b9d4310c e630217a5d49f66e1c9854fdb781d750 {"aliquot_tag": "ALQ_abdc4cf", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01455.RNA-Seq.S22_L006_R2.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 4516104896 FASTQ S22_L006_R2 unaligned CPTAC3 b416578f-5d0e-49fc-be46-ad8150cfb1b9 a30a76295104381b122be5a7a5c33efb {"aliquot_tag": "ALQ_abdc4cf", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01455.RNA-Seq.S8_L002_R1.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3998696668 FASTQ S8_L002_R1 unaligned CPTAC3 ee74ec6a-6226-4430-bf1b-f96aa946931d aaeb229421c05122c3714ebd8ea3fedd {"aliquot_tag": "ALQ_93d65e50", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.RNA-Seq.S8_L002_R2.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4361133643 FASTQ S8_L002_R2 unaligned CPTAC3 fad524b8-265f-4b7b-bcc9-d2cddba083c6 9d5d76a84fff086fcbbcd36b05ec5c1f {"aliquot_tag": "ALQ_93d65e50", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.RNA-Seq.transcriptome.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.transcriptome.gdc_realn.bam 10753406411 BAM transcriptome harmonized CPTAC3 9f95629b-5e03-4b5f-a06a-3f75710feac3 ea14758e4a7b509283f99c0b73b00e22 {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.RNA-Seq.transcriptome.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.transcriptome.gdc_realn.bam 10859607228 BAM transcriptome harmonized CPTAC3 6a25b28f-d43d-4481-a64e-64f18294590e 551bfce6687128be28f17cb7e9b85618 {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor"} -C3L-01455.WGS.A C3L-01455 LSCC WGS tissue_normal CPT0108600006 CPT0108600006.WholeGenome.RP-1303.bam 59875554142 BAM aligned CPTAC3 9b8f7cfd-6b58-4b5a-9d42-2c6f71865400 40cf8c8cd3df93fa9a3cbc75dc9b048f {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.WGS.A.hg38 C3L-01455 LSCC WGS tissue_normal CPT0108600006 23e914a3-9538-4816-90ca-95ef0960b86d_wgs_gdc_realn.bam 87546027787 BAM harmonized CPTAC3 b11a1346-850e-4233-8a96-ed1e6ff0de8d 00bde5d5a33cec11afc26d82001db3d8 {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.WGS.N C3L-01455 LSCC WGS blood_normal CPT0108340002 CPT0108340002.WholeGenome.RP-1303.bam 52020666434 BAM aligned CPTAC3 32396f9d-037a-4418-8a15-cf7d70d05571 08d7e63aef62a8a0cb723aacc9f2b0b0 {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01455.WGS.N.hg38 C3L-01455 LSCC WGS blood_normal CPT0108340002 cf3222f7-40e1-48fa-af77-ec1ca37435c2_wgs_gdc_realn.bam 78130530534 BAM harmonized CPTAC3 2166ea32-e285-4f46-babf-70f7c19fea16 fc9faf6df5edf1ba7289cec5e280a1ca {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01455.WGS.T C3L-01455 LSCC WGS tumor CPT0108560009 CPT0108560009.WholeGenome.RP-1303.bam 70474121486 BAM aligned CPTAC3 a998f39c-1c86-48b2-b0f9-e703e0c90a5c 85db4ad7010a08f2d9e2a43be3e386ae {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor"} -C3L-01455.WGS.T.hg38 C3L-01455 LSCC WGS tumor CPT0108560009 d300f0c0-0904-42c8-bddc-973ff46f5994_wgs_gdc_realn.bam 104646376857 BAM harmonized CPTAC3 820aac6d-53f3-4c65-a26b-f7a5217ad15b 32e873fc65226beab42a914965901bd8 {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor"} -C3L-01455.WXS.A C3L-01455 LSCC WXS tissue_normal CPT0108600006 CPT0108600006.WholeExome.RP-1303.bam 21825838800 BAM aligned CPTAC3 20d9cac2-5f36-4691-a3ff-05303c6a7290 6347102959476f66f7226ebbc961b8bc {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.WXS.A.hg38 C3L-01455 LSCC WXS tissue_normal CPT0108600006 23e914a3-9538-4816-90ca-95ef0960b86d_wxs_gdc_realn.bam 29364664090 BAM harmonized CPTAC3 e1a65824-32c1-49d6-98fb-67ad79f957f1 20ac83b5b4afde528256729d03d23193 {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01455.WXS.N C3L-01455 LSCC WXS blood_normal CPT0108340002 CPT0108340002.WholeExome.RP-1303.bam 21980901072 BAM aligned CPTAC3 192a8730-ee42-4e91-b7c1-5200a8375b2a 1243a5fc4b90b3ef16ae7dc6661eb19e {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01455.WXS.N.hg38 C3L-01455 LSCC WXS blood_normal CPT0108340002 cf3222f7-40e1-48fa-af77-ec1ca37435c2_wxs_gdc_realn.bam 30131827599 BAM harmonized CPTAC3 7c9485dc-7433-471e-8298-d48100d5c895 2bea4b275d6f2f0de6450d5050a777b5 {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01455.WXS.T C3L-01455 LSCC WXS tumor CPT0108560009 CPT0108560009.WholeExome.RP-1303.bam 23456814712 BAM aligned CPTAC3 d9e5cd29-acdc-4962-915b-a4ecfc689086 c7f98c84736f132c4103d5eb8763a99e {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor"} -C3L-01455.WXS.T.hg38 C3L-01455 LSCC WXS tumor CPT0108560009 d300f0c0-0904-42c8-bddc-973ff46f5994_wxs_gdc_realn.bam 32089993008 BAM harmonized CPTAC3 268f70e1-1b4d-498d-b9dc-54a99b3a161c a31347033a485fc9da71ca030ca7c4ca {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor"} -C3L-01458.MethArray.Green.T C3L-01458 CCRCC Methylation_Array tumor CPT0390170006 205549610122_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 81a8b531-c51f-410c-880e-4e5c59f889e6 e47c42ebc388b6a023ce9d957ecf757d {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor"} -C3L-01458.MethArray.Red.T C3L-01458 CCRCC Methylation_Array tumor CPT0390170006 205549610122_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e1dcf797-6543-440f-93d5-e9c95424e87c a1cd6d81014723fa9808a81c3e193ff9 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor"} -C3L-01458.miRNA-Seq.S31_L002_R1.T C3L-01458 CCRCC miRNA-Seq tumor CPT0390170009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GACGAC_S31_L002_R1_001.unaln.bam 217992675 BAM S31_L002_R1 unaligned CPTAC3 5eb469ed-6035-4abd-a844-d267773d4872 3ceeb2c1b381c9f653d2b2ed7a136557 {"aliquot_tag": "ALQ_3ea5cf32", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01458.miRNA-Seq.T.hg38 C3L-01458 CCRCC miRNA-Seq tumor CPT0390170009 714cc837-dd3c-4cf3-8a4f-f0696f0c73cf_mirnaseq_gdc_realn.bam 233164726 BAM harmonized CPTAC3 5f58803d-6d53-4a44-9071-2138fc09ae95 4aefb3e8e3f5c2db61c963742ca9bb27 {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor"} -C3L-01458.RNA-Seq.chimeric.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.chimeric.gdc_realn.bam 445680814 BAM chimeric harmonized CPTAC3 93228a4e-ec5a-4079-8a88-d7a998c682aa c08f03f32b80d3245e2d64f33936cf30 {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor"} -C3L-01458.RNA-Seq.genomic.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.genomic.gdc_realn.bam 9578086078 BAM genomic harmonized CPTAC3 127d008c-6a01-4fca-89b8-750b8b2a2c83 052cc0242c0656f91f3c9f8d45073efe {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor"} -C3L-01458.RNA-Seq.S23_L007_R1.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R1_001.fastq.gz 4660415968 FASTQ S23_L007_R1 unaligned CPTAC3 4bf103dd-9eae-436b-8760-fca54c6ac329 92167d0cc77257eaf73d5a6e62297c19 {"aliquot_tag": "ALQ_3ea5cf32", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01458.RNA-Seq.S23_L007_R2.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R2_001.fastq.gz 5178408148 FASTQ S23_L007_R2 unaligned CPTAC3 3d08172e-06e8-43f7-a9ab-7df17eec4f52 d3324dad7730abe39030a5b61e5c2488 {"aliquot_tag": "ALQ_3ea5cf32", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01458.RNA-Seq.transcriptome.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.transcriptome.gdc_realn.bam 11216396346 BAM transcriptome harmonized CPTAC3 9b7d08cf-d205-4029-99c4-5cda2d363a0e 3f183859be479a64d5319d3ddd42aabf {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor"} -C3L-01458.WGS.N C3L-01458 CCRCC WGS blood_normal CPT0390230002 CPT0390230002.WholeGenome.RP-2158.bam 23037302434 BAM aligned CPTAC3 b1e67fc4-3b73-4f2b-a294-b9c4bd32e829 e6fdf358726d81efa2cf762b85fa2a2d {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01458.WGS.N.hg38 C3L-01458 CCRCC WGS blood_normal CPT0390230002 d6925774-b5fa-4272-8e37-e92825c5af19_wgs_gdc_realn.bam 70652559004 BAM harmonized CPTAC3 2e2868ab-fdbf-44d2-a472-a0ca6a1cbc48 29ab65a6abf17f241a24bbb4560b0e79 {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01458.WGS.T C3L-01458 CCRCC WGS tumor CPT0390170006 CPT0390170006.WholeGenome.RP-2158.bam 24529184603 BAM aligned CPTAC3 dd8e2cb5-9a0f-496e-972a-c8b452c1f121 290e7de644d28978308bdb50baba9f19 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor"} -C3L-01458.WGS.T.hg38 C3L-01458 CCRCC WGS tumor CPT0390170006 adcd2461-33e3-4a63-b714-f7e86d5a1171_wgs_gdc_realn.bam 75815051472 BAM harmonized CPTAC3 01a2640e-f288-4711-b415-7ad5dbbdc94e fac7aa1b37c4f7fb8ec937987b471b62 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor"} -C3L-01458.WXS.N C3L-01458 CCRCC WXS blood_normal CPT0390230002 CPT0390230002.WholeExome.RP-1303.bam 21128885189 BAM aligned CPTAC3 55420536-61d8-49ba-b799-b8690b1f8256 30a0a65119934abdf75377b3936ff901 {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01458.WXS.N.hg38 C3L-01458 CCRCC WXS blood_normal CPT0390230002 d6925774-b5fa-4272-8e37-e92825c5af19_wxs_gdc_realn.bam 28881154243 BAM harmonized CPTAC3 99bed505-d683-4fe1-a2e2-e9e155902126 93cd423fc67ef04e0b8d2a4a41dd303c {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01458.WXS.T C3L-01458 CCRCC WXS tumor CPT0390170006 CPT0390170006.WholeExome.RP-1303.bam 23258545826 BAM aligned CPTAC3 f2f32a58-25f8-4950-98eb-ac9893ba0eb4 13f627bcdbb6d69b236997f98f2135a7 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor"} -C3L-01458.WXS.T.hg38 C3L-01458 CCRCC WXS tumor CPT0390170006 adcd2461-33e3-4a63-b714-f7e86d5a1171_wxs_gdc_realn.bam 31757442182 BAM harmonized CPTAC3 5802f71d-b31b-4ba2-9d52-17bb361deba2 4ec33600ee33caa80ca68d2c807c88cd {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor"} -C3L-01459.MethArray.Green.T C3L-01459 CCRCC Methylation_Array tumor CPT0085630009 202176290147_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e16965db-4c9d-48a2-a55d-e210dff0d141 a1bfb7ba6b16a9c575c8128b0da1eb22 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor"} -C3L-01459.MethArray.Red.T C3L-01459 CCRCC Methylation_Array tumor CPT0085630009 202176290147_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b7156ac6-a374-4733-aea6-fd27041db955 6ef422c108c05372251a3f2fcb068649 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor"} -C3L-01459.miRNA-Seq.S36_L004_R1.T C3L-01459 CCRCC miRNA-Seq tumor CPT0085630005 181113_UNC31-K00269_0164_AH23NNBBXY_CTTGTA_S36_L004_R1_001.unaln.bam 217477479 BAM S36_L004_R1 unaligned CPTAC3 2145088f-9eb1-4a4f-a4a2-8d64aeea7b55 4a9db9ec82b67f336138f886d9c4079d {"aliquot_tag": "ALQ_7889069d", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01459.miRNA-Seq.T.hg38 C3L-01459 CCRCC miRNA-Seq tumor CPT0085630005 a9eb74cd-1353-4747-9c64-7969dbfc41fc_mirnaseq_gdc_realn.bam 236675980 BAM harmonized CPTAC3 4f09e913-c72d-45d6-a480-a471e025c414 093b8abc6b908a04c80974a2062c9ae1 {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor"} -C3L-01459.RNA-Seq.chimeric.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.chimeric.gdc_realn.bam 43606472 BAM chimeric harmonized CPTAC3 d0eb822d-f947-4cb5-beeb-c4cf3aef5092 a1e03805af5680719dd4b0826058f329 {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor"} -C3L-01459.RNA-Seq.genomic.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.genomic.gdc_realn.bam 8900532806 BAM genomic harmonized CPTAC3 19e9c84d-cf4e-40d5-af9b-0bad3d839402 cee1f2b392f5b40332878509d765e087 {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor"} -C3L-01459.RNA-Seq.S19_L005_R1.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R1_001.fastq.gz 4146216879 FASTQ S19_L005_R1 unaligned CPTAC3 fb9d15da-1e77-4e47-b202-e8240c7b9b60 e56f0368ab9e3e84a30e418a8a7f6b5f {"aliquot_tag": "ALQ_7889069d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01459.RNA-Seq.S19_L005_R2.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R2_001.fastq.gz 4542324144 FASTQ S19_L005_R2 unaligned CPTAC3 88270c78-1ebe-4947-9bb6-7ac901ea33f7 0a6834455a345b77ca3ff0fadd33c6dd {"aliquot_tag": "ALQ_7889069d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01459.RNA-Seq.transcriptome.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.transcriptome.gdc_realn.bam 11331639475 BAM transcriptome harmonized CPTAC3 156226cc-5d9c-42c8-b9cf-91200eeb1f5c 1483439f10b993963a4f96fc098ce1ab {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor"} -C3L-01459.WGS.N C3L-01459 CCRCC WGS blood_normal CPT0086590002 CPT0086590002.WholeGenome.RP-1303.bam 73659720846 BAM aligned CPTAC3 ae717143-e888-47b6-81c0-8a07380ee8d6 f609f774bbe9a1f1abcfa914966af063 {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01459.WGS.N.hg38 C3L-01459 CCRCC WGS blood_normal CPT0086590002 04b86eab-b41c-4b80-bf4f-ca867afe4c02_gdc_realn.bam 111782579047 BAM harmonized CPTAC3 c36ff144-2cea-4141-91a3-0d71ee37dcb7 c2c1944548d73706260e9aa1c2397dc6 {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01459.WGS.T C3L-01459 CCRCC WGS tumor CPT0085630009 CPT0085630009.WholeGenome.RP-1303.bam 68012162148 BAM aligned CPTAC3 6a512ea4-a345-416a-8a52-da9501e3c5f0 3c866a13da74b6006700ef71c256bc82 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor"} -C3L-01459.WGS.T.hg38 C3L-01459 CCRCC WGS tumor CPT0085630009 a9a00193-10b4-48f5-a3d5-8946a4710f20_gdc_realn.bam 100283837250 BAM harmonized CPTAC3 581ac66f-7cf9-43a7-a2c0-cf7b4be5bce7 979529788083d6fe51de7cd1727f1361 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor"} -C3L-01459.WXS.N C3L-01459 CCRCC WXS blood_normal CPT0086590002 CPT0086590002.WholeExome.RP-1303.bam 30507944514 BAM aligned CPTAC3 21f3fa79-8956-4201-97b8-0b05be0f23b1 fea44b948826408a91987d55f4068a86 {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01459.WXS.N.hg38 C3L-01459 CCRCC WXS blood_normal CPT0086590002 04b86eab-b41c-4b80-bf4f-ca867afe4c02_gdc_realn.bam 42834088251 BAM harmonized CPTAC3 f1c0ee5c-3198-40ad-bedd-2339285e9f34 c36aba45de6fe907da0f28676a0d684e {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01459.WXS.T C3L-01459 CCRCC WXS tumor CPT0085630009 CPT0085630009.WholeExome.RP-1303.bam 26350328050 BAM aligned CPTAC3 9b48648e-5f85-40a9-ae3e-8f348c1bb1ac 80d18681f7d53b6daf6140e12afc3d16 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor"} -C3L-01459.WXS.T.hg38 C3L-01459 CCRCC WXS tumor CPT0085630009 a9a00193-10b4-48f5-a3d5-8946a4710f20_gdc_realn.bam 36484894246 BAM harmonized CPTAC3 e616a85f-603b-4425-9c79-c8eae5e9a22b 4edcae8a9a19f4d566ef9936d7db8b97 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor"} -C3L-01460.MethArray.Green.T C3L-01460 CCRCC Methylation_Array tumor CPT0390250006 205549610122_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 50315ce9-3bd0-41e5-befb-4c66a891d100 f3be2b1d7fa69540b2849b156f27a524 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor"} -C3L-01460.MethArray.Red.T C3L-01460 CCRCC Methylation_Array tumor CPT0390250006 205549610122_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 11713cbb-f4fc-4f15-9b1f-1088d7c0e9b6 7abdd1e581c2794c8e25c5c8b46879bc {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor"} -C3L-01460.miRNA-Seq.S32_L002_R1.T C3L-01460 CCRCC miRNA-Seq tumor CPT0390250009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAATCG_S32_L002_R1_001.unaln.bam 299349773 BAM S32_L002_R1 unaligned CPTAC3 d3e59793-3c02-417b-bede-5bb6f94d3964 6660810d0f05557f6b4f8ca89745edc4 {"aliquot_tag": "ALQ_c2f1eefc", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01460.miRNA-Seq.T.hg38 C3L-01460 CCRCC miRNA-Seq tumor CPT0390250009 bf650281-c3ce-4239-9e5e-1a671946a345_mirnaseq_gdc_realn.bam 323150786 BAM harmonized CPTAC3 00ed8973-b493-431a-9b35-7944f52b0a7e 1997d84f0538b70af9b964e92d8f4cb0 {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor"} -C3L-01460.RNA-Seq.chimeric.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.chimeric.gdc_realn.bam 394482866 BAM chimeric harmonized CPTAC3 8af9ba9d-5a1b-4c9c-b214-97692ceb9c6f f5ee6b0cb592ed8ecea6838dc2a69eeb {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor"} -C3L-01460.RNA-Seq.genomic.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.genomic.gdc_realn.bam 7593381016 BAM genomic harmonized CPTAC3 a7f0dd8e-d8b9-4133-b59e-1e8f90131834 8c94303235e8e4778590058f73331f67 {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor"} -C3L-01460.RNA-Seq.S24_L007_R1.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R1_001.fastq.gz 3574421309 FASTQ S24_L007_R1 unaligned CPTAC3 fd69960a-6ac1-4877-9eb5-5c2bfcc295a0 0410834c24ab75685e0a64dba91f9f15 {"aliquot_tag": "ALQ_c2f1eefc", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01460.RNA-Seq.S24_L007_R2.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R2_001.fastq.gz 4062071642 FASTQ S24_L007_R2 unaligned CPTAC3 725de49b-912a-41fb-8024-5525d5d1d883 fd277bf8d54d829e388d61f3ff56eb1d {"aliquot_tag": "ALQ_c2f1eefc", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01460.RNA-Seq.transcriptome.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.transcriptome.gdc_realn.bam 10201743660 BAM transcriptome harmonized CPTAC3 ff3aeaaf-4f9a-4ff5-9920-e4f9122f6a9e 0cbe70b599957e8940272bf08550e599 {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor"} -C3L-01460.WGS.N C3L-01460 CCRCC WGS blood_normal CPT0390310002 CPT0390310002.WholeGenome.RP-2158.bam 24866628305 BAM aligned CPTAC3 5fd5900f-59d8-4c13-a25e-dc6a00adf09f 6aa71a683370cfdc8eee909210c4f83c {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal"} -C3L-01460.WGS.N.hg38 C3L-01460 CCRCC WGS blood_normal CPT0390310002 795eb542-2268-44b0-b585-6d9d188d430d_wgs_gdc_realn.bam 76972115849 BAM harmonized CPTAC3 e4a6947d-14e6-4e28-b437-abb70a71835a b93d7a7f1bdcd6190d7005c8d2148588 {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal"} -C3L-01460.WGS.T C3L-01460 CCRCC WGS tumor CPT0390250006 CPT0390250006.WholeGenome.RP-2158.bam 25988028703 BAM aligned CPTAC3 4026e525-20ac-4da4-b61d-5688fa74e610 ab5dfa3555addf17084f14a11533d013 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor"} -C3L-01460.WGS.T.hg38 C3L-01460 CCRCC WGS tumor CPT0390250006 07ff092d-87f8-4b25-8b13-ce34a694f1dc_wgs_gdc_realn.bam 76648042371 BAM harmonized CPTAC3 3449c4f5-4aea-4999-af41-8fb6632cc3da 4023674b1ab3e698f399c9115d9cd4d6 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor"} -C3L-01460.WXS.N C3L-01460 CCRCC WXS blood_normal CPT0390310002 CPT0390310002.WholeExome.RP-1303.bam 21608656394 BAM aligned CPTAC3 7005c8ea-209e-4776-9a8a-d3afaee24caf c3e7e7d3d4aa0dc1a42acf45e895d67e {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal"} -C3L-01460.WXS.N.hg38 C3L-01460 CCRCC WXS blood_normal CPT0390310002 795eb542-2268-44b0-b585-6d9d188d430d_wxs_gdc_realn.bam 29257405595 BAM harmonized CPTAC3 9e51038c-0b99-44c3-bf6b-8077ae2996e3 1ee12a7f2b89e2e9269940cecc4b6156 {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal"} -C3L-01460.WXS.T C3L-01460 CCRCC WXS tumor CPT0390250006 CPT0390250006.WholeExome.RP-1303.bam 20315924405 BAM aligned CPTAC3 b222774c-7c96-489d-8dd4-cd9ba4ad3525 1af05e5cece51ad470e41075094529a8 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor"} -C3L-01460.WXS.T.hg38 C3L-01460 CCRCC WXS tumor CPT0390250006 07ff092d-87f8-4b25-8b13-ce34a694f1dc_wxs_gdc_realn.bam 27712423384 BAM harmonized CPTAC3 8ac1990d-7d5a-4ac3-82d3-4ab65566ec40 f6925cfaa7c35b7b0a1291a0684e141a {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor"} -C3L-01461.MethArray.Green.T C3L-01461 CCRCC Methylation_Array tumor CPT0390120006 205589730117_R02C01_Grn.idat 13677957 IDAT Green NA CPTAC3 0c2a1829-5a6f-4649-b60a-0aa1e5927839 1d18f953419f1d34b516b2b185228ae8 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor"} -C3L-01461.MethArray.Red.T C3L-01461 CCRCC Methylation_Array tumor CPT0390120006 205589730117_R02C01_Red.idat 13677957 IDAT Red NA CPTAC3 c6ec4c77-afce-4c28-8f6a-457f84639947 1fd21c75d4a8d160215f16a0112d4708 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor"} -C3L-01461.miRNA-Seq.S30_L002_R1.T C3L-01461 CCRCC miRNA-Seq tumor CPT0390120009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTCAGA_S30_L002_R1_001.unaln.bam 323140418 BAM S30_L002_R1 unaligned CPTAC3 b5ccd7c5-2353-492d-8669-81f8235d80f4 0afbfc217a46b0ed7aadf170e12af736 {"aliquot_tag": "ALQ_f6454042", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01461.miRNA-Seq.T.hg38 C3L-01461 CCRCC miRNA-Seq tumor CPT0390120009 04c565f1-c871-4aab-9060-222c76b3871e_mirnaseq_gdc_realn.bam 347007377 BAM harmonized CPTAC3 ae0cc7e9-27e4-4d76-844e-bf0fe1f8576b 5229110c9366ebbefb649228d04f8390 {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor"} -C3L-01461.RNA-Seq.chimeric.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.chimeric.gdc_realn.bam 188127124 BAM chimeric harmonized CPTAC3 49dc05e7-f122-43a9-a1b0-fff178a8dcaa 4dfe01f39f699f996fe24da362307f2e {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor"} -C3L-01461.RNA-Seq.genomic.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.genomic.gdc_realn.bam 10090382210 BAM genomic harmonized CPTAC3 9ce9e638-56b7-4662-ae8a-d7da37a0618d 0af18631488e67cf3c98db4f5e7e0158 {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor"} -C3L-01461.RNA-Seq.S26_L008_R1.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R1_001.fastq.gz 4612691095 FASTQ S26_L008_R1 unaligned CPTAC3 f93d5186-f118-4b95-acc1-cfd33dd98295 caddad3386d9fb3ef80ef4a75e08b214 {"aliquot_tag": "ALQ_f6454042", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01461.RNA-Seq.S26_L008_R2.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R2_001.fastq.gz 5371389379 FASTQ S26_L008_R2 unaligned CPTAC3 2f49c25f-4a47-447a-a280-8a7d960a5bcf 7de17d51fd78d0ad7f9774ffaefe8b84 {"aliquot_tag": "ALQ_f6454042", "sample": "S26", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01461.RNA-Seq.transcriptome.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.transcriptome.gdc_realn.bam 13077757305 BAM transcriptome harmonized CPTAC3 0ba97631-fea9-4dcf-8e63-36e12115f325 3de3bbe0ba018509ec8aebbbdc870622 {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor"} -C3L-01461.WGS.N C3L-01461 CCRCC WGS blood_normal CPT0390150002 CPT0390150002.WholeGenome.RP-2158.bam 30115048116 BAM aligned CPTAC3 e1c7c94c-53d8-44b0-8c38-d19133acdef1 dc260b4737642f570dcc6b02b5986ee0 {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal"} -C3L-01461.WGS.N.hg38 C3L-01461 CCRCC WGS blood_normal CPT0390150002 ca4a04a0-4e64-4d60-9f0f-fabe7756fdb3_wgs_gdc_realn.bam 91707793151 BAM harmonized CPTAC3 81901f2a-f293-4c5f-8af0-b7cd5481e3fe d64cda4e26b7539675a180454ede22c3 {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal"} -C3L-01461.WGS.T C3L-01461 CCRCC WGS tumor CPT0390120006 CPT0390120006.WholeGenome.RP-2158.bam 42988952501 BAM aligned CPTAC3 ace67552-c0a4-461b-b2dd-76292ea8106e 031268e0fff39cb79559cc8c12bc661e {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor"} -C3L-01461.WGS.T.hg38 C3L-01461 CCRCC WGS tumor CPT0390120006 87d7bb11-a9d2-4421-a8e2-b24966d25ab4_wgs_gdc_realn.bam 130083406218 BAM harmonized CPTAC3 b62cd747-c117-4728-9504-c239b9ad49a6 67d097707dd27fb6039369c49d88eeb0 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor"} -C3L-01461.WXS.N C3L-01461 CCRCC WXS blood_normal CPT0390150002 CPT0390150002.WholeExome.RP-1303.bam 25972597012 BAM aligned CPTAC3 9278484e-fb6d-4052-92db-f24e81006b60 27cea09266734ef84ea52dfefe3b2da9 {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal"} -C3L-01461.WXS.N.hg38 C3L-01461 CCRCC WXS blood_normal CPT0390150002 ca4a04a0-4e64-4d60-9f0f-fabe7756fdb3_wxs_gdc_realn.bam 35581755690 BAM harmonized CPTAC3 6ac8eeed-0fc0-438f-938f-8aa959f533e1 8b4080205a7b59718b243e4dd65a494e {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal"} -C3L-01461.WXS.T C3L-01461 CCRCC WXS tumor CPT0390120006 CPT0390120006.WholeExome.RP-1303.bam 21162930423 BAM aligned CPTAC3 a7d725aa-e38c-4a1d-8d41-c775536d2bdb 581b585c59fed6303151a56a43a84cd7 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor"} -C3L-01461.WXS.T.hg38 C3L-01461 CCRCC WXS tumor CPT0390120006 87d7bb11-a9d2-4421-a8e2-b24966d25ab4_wxs_gdc_realn.bam 28989072068 BAM harmonized CPTAC3 ebfcdeac-d093-4b09-b47e-9992e39ad0ed 318ffe92222f6efd7bea957588fc5d49 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor"} -C3L-01462.MethArray.Green.A C3L-01462 CCRCC Methylation_Array tissue_normal CPT0085920006 204930630034_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 77caa79b-e7f4-4c19-a8b3-e3cec28174ee ad220b46c3ef53f43223bab61adb4756 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.MethArray.Green.T C3L-01462 CCRCC Methylation_Array tumor CPT0085910009 202184900148_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 e04f2328-d8bf-4103-9b38-491f148cd18f dc00292cd2cb7c11483bb5a0dd15d78a {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor"} -C3L-01462.MethArray.Red.A C3L-01462 CCRCC Methylation_Array tissue_normal CPT0085920006 204930630034_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 182f8593-f748-494b-a8f3-0016fc827473 21f911e892257abef91c3315be18a030 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.MethArray.Red.T C3L-01462 CCRCC Methylation_Array tumor CPT0085910009 202184900148_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 095cc1db-7c1b-4bfe-b663-3c5f51b2e37c 700a3d923a2933caaa912ae5fdb918cb {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor"} -C3L-01462.miRNA-Seq.A.hg38 C3L-01462 CCRCC miRNA-Seq tissue_normal CPT0085920009 91f2cf9c-a3bd-4cb0-816d-9bc85db47e5f_mirnaseq_gdc_realn.bam 290454430 BAM harmonized CPTAC3 1ac44bc3-897a-47c6-8883-b374d35763ee 9a6e55266cc9a52ff31b340a25299557 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.miRNA-Seq.S31_L002_R1.A C3L-01462 CCRCC miRNA-Seq tissue_normal CPT0085920009 181119_UNC31-K00269_0165_AH27WCBBXY_CAGATC_S31_L002_R1_001.unaln.bam 261713975 BAM S31_L002_R1 unaligned CPTAC3 e15c8f50-e1d0-4f5a-8f10-3018e4f2f12a cba4c56412e2ec24bb7c8a8bead56df6 {"aliquot_tag": "ALQ_bd09d1d3", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.miRNA-Seq.S7_L008_R1.T C3L-01462 CCRCC miRNA-Seq tumor CPT0085910006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L008_R1_001.unaln.bam 208347610 BAM S7_L008_R1 unaligned CPTAC3 001169ab-0092-4b70-9b28-219ccbf41e91 153d9b28e255c5bf369f78a9d811e46c {"aliquot_tag": "ALQ_6a16b692", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01462.miRNA-Seq.T.hg38 C3L-01462 CCRCC miRNA-Seq tumor CPT0085910006 50c13503-4e56-4ddb-86ac-9e08bbbe7601_mirnaseq_gdc_realn.bam 232216587 BAM harmonized CPTAC3 020eca9b-f121-42c5-ba31-e19dd7aa7124 bae759fb572165d8588ff16a63bc3ee8 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor"} -C3L-01462.RNA-Seq.chimeric.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.chimeric.gdc_realn.bam 32018835 BAM chimeric harmonized CPTAC3 9a49be90-675c-4a89-8b9d-018164974e71 7ced1d268b45d884286d330c1abe2a78 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.RNA-Seq.chimeric.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.chimeric.gdc_realn.bam 29178606 BAM chimeric harmonized CPTAC3 5a371033-9b4b-4cd7-a1dc-e172cbe95b30 805f3d3befb1a342ad43a389c6fe6341 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor"} -C3L-01462.RNA-Seq.genomic.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.genomic.gdc_realn.bam 8584848822 BAM genomic harmonized CPTAC3 65566e6e-c747-44a7-9843-5f802ff1415a 43bef0cf0c9e38c49721d7500ffbb613 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.RNA-Seq.genomic.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.genomic.gdc_realn.bam 6151467388 BAM genomic harmonized CPTAC3 f32a6c26-c4df-4a9a-b9e5-4c4b256ea7c6 35c3221afb3ceb79543b75647fad7f83 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor"} -C3L-01462.RNA-Seq.S3_L001_R1.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3212761487 FASTQ S3_L001_R1 unaligned CPTAC3 a8022275-c8f1-46ed-be4f-0421566af10f 177782413bda1c5604a4098108537834 {"aliquot_tag": "ALQ_6a16b692", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01462.RNA-Seq.S3_L001_R2.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3534510896 FASTQ S3_L001_R2 unaligned CPTAC3 ee816a7e-c352-4b0c-9def-97ee54d8a321 8bc16895ad6f44d6543493fb120f0010 {"aliquot_tag": "ALQ_6a16b692", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01462.RNA-Seq.S8_L002_R1.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R1_001.fastq.gz 3861104781 FASTQ S8_L002_R1 unaligned CPTAC3 f5114053-a779-46ef-a9b4-a54f9bd0e2cf 8163b7292ea6d408e4c2a8e8b0e54dc7 {"aliquot_tag": "ALQ_bd09d1d3", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.RNA-Seq.S8_L002_R2.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R2_001.fastq.gz 4324001669 FASTQ S8_L002_R2 unaligned CPTAC3 bce94f76-62a9-470e-80b7-d4dec77a27ac fa5e5b97e34b7c7d229f4487a450163c {"aliquot_tag": "ALQ_bd09d1d3", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.RNA-Seq.transcriptome.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.transcriptome.gdc_realn.bam 10778072042 BAM transcriptome harmonized CPTAC3 26faa851-47dc-4857-bf2f-e7816c70a5d8 1af46bbe4bf146f71d540fae0d65a184 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.RNA-Seq.transcriptome.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.transcriptome.gdc_realn.bam 8608448961 BAM transcriptome harmonized CPTAC3 56f2e984-4a86-481a-90dd-00de2aafb5dd 4a29b7492ed2ef1b7f8ad6621fe514b0 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor"} -C3L-01462.WGS.A C3L-01462 CCRCC WGS tissue_normal CPT0085920006 CPT0085920006.WholeGenome.RP-1303.bam 68955077857 BAM aligned CPTAC3 8a8dae8d-e22b-42e3-9eef-e642fbd64da0 fa0d417303c1c93ca71a1172a26b8c3d {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.WGS.A.hg38 C3L-01462 CCRCC WGS tissue_normal CPT0085920006 cf413cfe-d871-4dc4-88b0-42d82a1aaea2_wgs_gdc_realn.bam 100860850101 BAM harmonized CPTAC3 0a54d990-6fe2-40ca-afc2-5df1c3f8ef65 268c9de26d10e2fb46bfcc6412c2b9c9 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.WGS.N C3L-01462 CCRCC WGS blood_normal CPT0086690002 CPT0086690002.WholeGenome.RP-1303.bam 69593254605 BAM aligned CPTAC3 f7012e04-e836-4f8f-8f8b-8e625c7a3331 53d8019f77d502049b255ab1b007dbbe {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal"} -C3L-01462.WGS.N.hg38 C3L-01462 CCRCC WGS blood_normal CPT0086690002 8a49d5b0-ba51-492e-bb4f-5d26926217f3_gdc_realn.bam 104255210494 BAM harmonized CPTAC3 65cadd28-f668-4c01-8622-fac85370f41d dcb7890feb4ada2cee595d7df686c555 {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal"} -C3L-01462.WGS.T C3L-01462 CCRCC WGS tumor CPT0085910009 CPT0085910009.WholeGenome.RP-1303.bam 73983297871 BAM aligned CPTAC3 5917bc67-3b68-424e-a470-2205b6b71384 b8342b1f20284fe0f29b4a88bc1dda1e {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor"} -C3L-01462.WGS.T.hg38 C3L-01462 CCRCC WGS tumor CPT0085910009 79218677-07e3-4468-8147-7a555f00fc8e_gdc_realn.bam 111479512745 BAM harmonized CPTAC3 7c6f34ad-430e-4948-961d-3f9154ae7c98 2b66e184b24e70b0d1511d17f51a2f67 {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor"} -C3L-01462.WXS.A C3L-01462 CCRCC WXS tissue_normal CPT0085920006 CPT0085920006.WholeExome.RP-1303.bam 23991825061 BAM aligned CPTAC3 620b92cd-5f59-42f7-afd7-4f1ad62a0632 c9285fbf8414af53892d7c32a39b4bc6 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.WXS.A.hg38 C3L-01462 CCRCC WXS tissue_normal CPT0085920006 cf413cfe-d871-4dc4-88b0-42d82a1aaea2_wxs_gdc_realn.bam 31928088018 BAM harmonized CPTAC3 c2fd77e1-8e9f-4f08-bf9f-25dfa3bedf70 6f32b723a8d7e28a0a9d16838755ec98 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01462.WXS.N C3L-01462 CCRCC WXS blood_normal CPT0086690002 CPT0086690002.WholeExome.RP-1303.bam 40435515133 BAM aligned CPTAC3 003f303d-be5a-4cf1-baaf-a48b4e3e208c 22ab71ba121570ff9ca68c6bbb04a09d {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal"} -C3L-01462.WXS.N.hg38 C3L-01462 CCRCC WXS blood_normal CPT0086690002 8a49d5b0-ba51-492e-bb4f-5d26926217f3_gdc_realn.bam 56231659746 BAM harmonized CPTAC3 5ee3189f-c623-453e-847f-57a172e4c994 6c8c433b2de0cbd10153a8858c372277 {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal"} -C3L-01462.WXS.T C3L-01462 CCRCC WXS tumor CPT0085910009 CPT0085910009.WholeExome.RP-1303.bam 28150974593 BAM aligned CPTAC3 a0105491-3dd6-45a2-ad59-8ea93499c09b d5580c70855701f055414cc75f4d4dc7 {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor"} -C3L-01462.WXS.T.hg38 C3L-01462 CCRCC WXS tumor CPT0085910009 79218677-07e3-4468-8147-7a555f00fc8e_gdc_realn.bam 38436778496 BAM harmonized CPTAC3 0a25364d-3b29-4bbe-b6ba-d97a2fac610a 575ee1f4c465ec7231ef7aacec1eb76b {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor"} -C3L-01463.MethArray.Green.T C3L-01463 CCRCC Methylation_Array tumor CPT0389910006 205549600088_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b89cfdb8-5bb9-4a31-ab36-09a56f0d2185 b89f410f18317746fe8202e8c702ef17 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor"} -C3L-01463.MethArray.Red.T C3L-01463 CCRCC Methylation_Array tumor CPT0389910006 205549600088_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 07f2f382-60ae-4850-90c0-0bc3cb2ee998 d2f05630cbe1b662041742aee07d7e17 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor"} -C3L-01463.miRNA-Seq.S24_L002_R1.T C3L-01463 CCRCC miRNA-Seq tumor CPT0389910009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CATGGC_S24_L002_R1_001.unaln.bam 227444146 BAM S24_L002_R1 unaligned CPTAC3 6f165cb3-c803-4a07-b597-e81c7496198d 060495a5b26a32ae00dc8004b920b00c {"aliquot_tag": "ALQ_484fdb2", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01463.miRNA-Seq.T.hg38 C3L-01463 CCRCC miRNA-Seq tumor CPT0389910009 3ed4f5fa-2dc6-42b3-afbf-c5b57dcb36f8_mirnaseq_gdc_realn.bam 242281242 BAM harmonized CPTAC3 727f5038-9b36-4715-80f2-659cb3bf5a45 54785c9329c1ebdd0c70f8b9377ca10a {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor"} -C3L-01463.RNA-Seq.chimeric.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.chimeric.gdc_realn.bam 449451682 BAM chimeric harmonized CPTAC3 e2f2ea20-20cc-46f3-ad56-fe9bbde310e7 6f6598bb541d07523b245afbd80b58ac {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor"} -C3L-01463.RNA-Seq.genomic.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.genomic.gdc_realn.bam 8487329424 BAM genomic harmonized CPTAC3 1c432eb1-b099-4d18-adc7-d41f71ee2726 2df6d79ee9459daa2b6096c54099c1ec {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor"} -C3L-01463.RNA-Seq.S2_L001_R1.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 3991979989 FASTQ S2_L001_R1 unaligned CPTAC3 5a7080ad-235d-4cec-9d79-7730f6d35e84 c532d4fcd52808ed04dba0149612d9a3 {"aliquot_tag": "ALQ_484fdb2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01463.RNA-Seq.S2_L001_R2.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 4584028673 FASTQ S2_L001_R2 unaligned CPTAC3 cd19d919-00ce-4cf7-b2a5-6e277a4f9cf4 60ae278e23693155793b7df348a41d6f {"aliquot_tag": "ALQ_484fdb2", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01463.RNA-Seq.transcriptome.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.transcriptome.gdc_realn.bam 10771862448 BAM transcriptome harmonized CPTAC3 bc2218e0-aeb9-4ea5-89c5-c49384c13720 945368986449e5e0a791f9de724b5d05 {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor"} -C3L-01463.WGS.N C3L-01463 CCRCC WGS blood_normal CPT0389940002 CPT0389940002.WholeGenome.RP-2158.bam 30188703362 BAM aligned CPTAC3 f395b1b2-c45a-486c-9309-52a2fd623ac2 2494f9d0212978537f2bb5f7355d5e2f {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01463.WGS.N.hg38 C3L-01463 CCRCC WGS blood_normal CPT0389940002 a658bf66-1d71-4145-a226-364cde057592_wgs_gdc_realn.bam 91947223451 BAM harmonized CPTAC3 3e46fc89-f1a6-4e5b-90dc-3487fa9b40f3 53096321d158dde60c5e2795a7b17c7e {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01463.WGS.T C3L-01463 CCRCC WGS tumor CPT0389910006 CPT0389910006.WholeGenome.RP-2158.bam 21643399483 BAM aligned CPTAC3 fec7d88b-4a6d-466a-9a84-7d6a97d34807 7c901270d365478fc6a1c9f870c28097 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor"} -C3L-01463.WGS.T.hg38 C3L-01463 CCRCC WGS tumor CPT0389910006 674f292d-e5a4-496b-a718-fe8222badafd_wgs_gdc_realn.bam 63744696691 BAM harmonized CPTAC3 e3c08d48-d181-46c3-88ae-970a53c6f6a2 281f83f87e952b96c06141dbb4bbecda {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor"} -C3L-01463.WXS.N C3L-01463 CCRCC WXS blood_normal CPT0389940002 CPT0389940002.WholeExome.RP-1303.bam 18832180161 BAM aligned CPTAC3 4d32b567-30fb-45f3-8d06-76f6cd300676 2df5914122f3d2c1d6c391dc36631501 {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01463.WXS.N.hg38 C3L-01463 CCRCC WXS blood_normal CPT0389940002 a658bf66-1d71-4145-a226-364cde057592_wxs_gdc_realn.bam 25094190269 BAM harmonized CPTAC3 ddd80cbe-d39c-4d63-9629-1fb886973d52 eaefd5f012f6914bbfc099b06d09b6f1 {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01463.WXS.T C3L-01463 CCRCC WXS tumor CPT0389910006 CPT0389910006.WholeExome.RP-1303.bam 22575329255 BAM aligned CPTAC3 317cb7a9-baad-4356-b010-6a0f60681b1e 039873a0ab4df61bee7c98a121b790dd {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor"} -C3L-01463.WXS.T.hg38 C3L-01463 CCRCC WXS tumor CPT0389910006 674f292d-e5a4-496b-a718-fe8222badafd_wxs_gdc_realn.bam 31008234112 BAM harmonized CPTAC3 6c410b50-bd62-41df-a431-3cc93e1c54d1 678fc0c13d224755cc5e832e06df6588 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor"} -C3L-01464.MethArray.Green.T C3L-01464 CCRCC Methylation_Array tumor CPT0085850009 202163530118_R03C01_Grn.idat 13676245 IDAT Green NA CPTAC3 6a30ccdd-b358-401e-8434-9a2635db0895 05973bab435b65e288c1be58e3539107 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor"} -C3L-01464.MethArray.Red.T C3L-01464 CCRCC Methylation_Array tumor CPT0085850009 202163530118_R03C01_Red.idat 13676245 IDAT Red NA CPTAC3 8a0829ca-169d-4602-a872-dc9163603b10 54492d5eef16629d7b2c71db73cd8395 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor"} -C3L-01464.miRNA-Seq.A.hg38 C3L-01464 CCRCC miRNA-Seq tissue_normal CPT0085860009 4bb5590a-11d4-4184-992a-f7358df31986_mirnaseq_gdc_realn.bam 280270146 BAM harmonized CPTAC3 04ed47e2-0ed4-4788-98c6-ffa575e82eb8 337c974285f746422a7348a300916b3c {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01464.miRNA-Seq.S30_L002_R1.A C3L-01464 CCRCC miRNA-Seq tissue_normal CPT0085860009 181119_UNC31-K00269_0165_AH27WCBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 251560244 BAM S30_L002_R1 unaligned CPTAC3 2952d094-7bfc-44a9-843a-93a06f18be45 c4e6fa35f96b131a4a1f218fbb06f7af {"aliquot_tag": "ALQ_83d5a4b6", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01464.miRNA-Seq.S6_L008_R1.T C3L-01464 CCRCC miRNA-Seq tumor CPT0085850006 181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L008_R1_001.unaln.bam 204616261 BAM S6_L008_R1 unaligned CPTAC3 c8a88f19-1333-43ef-970d-ae2cf4c324af ae9aa70cde39bad74a0bfacc4eda42d0 {"aliquot_tag": "ALQ_54cac3f7", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01464.miRNA-Seq.T.hg38 C3L-01464 CCRCC miRNA-Seq tumor CPT0085850006 597bbb20-01b4-482a-b1a0-446ca8aaf441_mirnaseq_gdc_realn.bam 228665363 BAM harmonized CPTAC3 22c178be-157b-483b-82c5-ba9057260b5f b0907e4b9a15d9222e4d95eb468f918e {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor"} -C3L-01464.RNA-Seq.chimeric.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.chimeric.gdc_realn.bam 35607866 BAM chimeric harmonized CPTAC3 e46ec14b-a29b-465e-b113-1dc9ad869817 b60395d998ecca159bf43345abc680f7 {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01464.RNA-Seq.chimeric.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.chimeric.gdc_realn.bam 31387972 BAM chimeric harmonized CPTAC3 42035def-b36f-4fe8-ae71-54c4ca518073 4478167703a3aa71afbd25ad96ba92f3 {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor"} -C3L-01464.RNA-Seq.genomic.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.genomic.gdc_realn.bam 9471288364 BAM genomic harmonized CPTAC3 ddaabd09-7a70-4dfd-9473-632f02a80b4a 3ba156da07543eaef456a92c93086b9d {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01464.RNA-Seq.genomic.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.genomic.gdc_realn.bam 6769503083 BAM genomic harmonized CPTAC3 0c417f46-e5bd-4143-8cc9-828ffdb579f0 96bb51540b9e0bb9dee3958887943a2f {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor"} -C3L-01464.RNA-Seq.S6_L002_R1.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4352087275 FASTQ S6_L002_R1 unaligned CPTAC3 fb0e7125-51da-4ad9-b07e-35cc204246d5 246fa6a4d862128dc9b4ab749a7495c7 {"aliquot_tag": "ALQ_83d5a4b6", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01464.RNA-Seq.S6_L002_R2.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R2_001.fastq.gz 4861027895 FASTQ S6_L002_R2 unaligned CPTAC3 9c383d87-d079-4963-aa4a-a0780b26f958 365c007f927af570e223f0e31df1541e {"aliquot_tag": "ALQ_83d5a4b6", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01464.RNA-Seq.S7_L002_R1.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R1_001.fastq.gz 3433675698 FASTQ S7_L002_R1 unaligned CPTAC3 9a39a5e4-189c-4f57-9095-2966a3eeb2ac 920386420aea91898d9aecab8637f4a2 {"aliquot_tag": "ALQ_54cac3f7", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01464.RNA-Seq.S7_L002_R2.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R2_001.fastq.gz 3793634944 FASTQ S7_L002_R2 unaligned CPTAC3 267a5494-aa7e-40ba-9351-7ae0b2f86e48 cc4c51fa08288c4102fda5cc6e1abc7e {"aliquot_tag": "ALQ_54cac3f7", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01464.RNA-Seq.transcriptome.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.transcriptome.gdc_realn.bam 12179713533 BAM transcriptome harmonized CPTAC3 3f24d2df-e08e-4788-bf91-2f7949c69d0f 786e14af98bdc9247f02adc1d1d6913f {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01464.RNA-Seq.transcriptome.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.transcriptome.gdc_realn.bam 10135239972 BAM transcriptome harmonized CPTAC3 6fe1e177-70d2-478a-8951-5d55bc8a4d3e e928a515ebaca6ee6dc9fbe51f84d1ff {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor"} -C3L-01464.WGS.N C3L-01464 CCRCC WGS blood_normal CPT0086670002 CPT0086670002.WholeGenome.RP-1303.bam 72187580351 BAM aligned CPTAC3 5698916f-6992-45ef-ab48-6d2e39126e7c 0903aeccb08d1042c3095ed9b4d0b521 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal"} -C3L-01464.WGS.N.hg38 C3L-01464 CCRCC WGS blood_normal CPT0086670002 49943e71-0b50-4e83-9188-24c2276c82b0_gdc_realn.bam 109870889316 BAM harmonized CPTAC3 1498828b-94e0-4ffe-a58b-e9dca8fedeb2 9c758c23f9a92ba1c053b598797f7d39 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal"} -C3L-01464.WGS.T C3L-01464 CCRCC WGS tumor CPT0085850009 CPT0085850009.WholeGenome.RP-1303.bam 63899222677 BAM aligned CPTAC3 bdd2519e-8447-48f1-a4ff-ee9630f1667b 43504571019d6469d834bfc101dfd5bb {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor"} -C3L-01464.WGS.T.hg38 C3L-01464 CCRCC WGS tumor CPT0085850009 cc24601c-c3d5-4ce5-8761-bbbf4af8b9b6_gdc_realn.bam 94774680054 BAM harmonized CPTAC3 25480987-1cb0-47b2-81cc-360d8843d0a2 4b9c84d7a67701211cc302c68b4c8cb2 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor"} -C3L-01464.WXS.N C3L-01464 CCRCC WXS blood_normal CPT0086670002 CPT0086670002.WholeExome.RP-1303.bam 31040762627 BAM aligned CPTAC3 e56134ec-afd3-4209-a299-3204df0d8815 2c69ae4a9b16a42b74fb3bde0c148575 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal"} -C3L-01464.WXS.N.hg38 C3L-01464 CCRCC WXS blood_normal CPT0086670002 49943e71-0b50-4e83-9188-24c2276c82b0_gdc_realn.bam 42456022187 BAM harmonized CPTAC3 6ddcc35d-1398-42a2-8fcf-299f838a4993 6e9e83803de3ec1de601ba8e54cb35f3 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal"} -C3L-01464.WXS.T C3L-01464 CCRCC WXS tumor CPT0085850009 CPT0085850009.WholeExome.RP-1303.bam 22249812023 BAM aligned CPTAC3 7330ac90-2950-4612-b197-11b4b29c7dc0 75ffab4114892ce175bc2fd9eb00aa0f {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor"} -C3L-01464.WXS.T.hg38 C3L-01464 CCRCC WXS tumor CPT0085850009 cc24601c-c3d5-4ce5-8761-bbbf4af8b9b6_gdc_realn.bam 30883548830 BAM harmonized CPTAC3 b7cab8fb-fdf3-4710-98df-98774bb11ef3 b1efa208ad9e46fc69c18cbc192304c9 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor"} -C3L-01465.MethArray.Green.T C3L-01465 CCRCC Methylation_Array tumor CPT0085790009 202176290116_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d4e46b04-9963-4f43-90a6-a2ce448c283b 7db39fc9941e93544f640e9b825597e5 {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor"} -C3L-01465.MethArray.Red.T C3L-01465 CCRCC Methylation_Array tumor CPT0085790009 202176290116_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 c61aa502-afbd-4b56-8551-7d111fa71a46 0c47fed04c6eaef3c9feb61d0accf61c {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor"} -C3L-01465.miRNA-Seq.S5_L008_R1.T C3L-01465 CCRCC miRNA-Seq tumor CPT0085790006 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L008_R1_001.unaln.bam 166602306 BAM S5_L008_R1 unaligned CPTAC3 719561e5-8f90-44d4-bed1-9a1e6450a960 ee839f188cf5731c2ae257942f70bce7 {"aliquot_tag": "ALQ_606c9c23", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01465.miRNA-Seq.T.hg38 C3L-01465 CCRCC miRNA-Seq tumor CPT0085790006 b25d4c2b-2259-4c39-a55e-960823f1b8b2_mirnaseq_gdc_realn.bam 181743265 BAM harmonized CPTAC3 8ab15484-5389-4724-966a-b6f8e84668b7 22e10ab921428ef517c19bd23ee0c7bb {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor"} -C3L-01465.RNA-Seq.chimeric.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.chimeric.gdc_realn.bam 30447079 BAM chimeric harmonized CPTAC3 d8c7e438-1547-49a7-9f49-f342855f2748 ea9098762fa0f99b811d7c66fac900d2 {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor"} -C3L-01465.RNA-Seq.genomic.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.genomic.gdc_realn.bam 7109623545 BAM genomic harmonized CPTAC3 e504fd4f-7542-498a-aa49-be26c2f7a243 46e7d5ccc475806174c0b5b9ab481ece {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor"} -C3L-01465.RNA-Seq.S8_L002_R1.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R1_001.fastq.gz 3582870850 FASTQ S8_L002_R1 unaligned CPTAC3 157eba3a-9261-4bc0-a5b6-778d0ef4015a 9419e25aaff5db7a3323ea91e9abee05 {"aliquot_tag": "ALQ_606c9c23", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01465.RNA-Seq.S8_L002_R2.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R2_001.fastq.gz 3964297654 FASTQ S8_L002_R2 unaligned CPTAC3 a125db0a-87a5-4799-b24e-87cd8a248114 e697eb5b3064587f3d8002686f712e14 {"aliquot_tag": "ALQ_606c9c23", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01465.RNA-Seq.transcriptome.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.transcriptome.gdc_realn.bam 9958219909 BAM transcriptome harmonized CPTAC3 42b91cac-15ad-4391-88d9-046808b23dfe 24dcf36b20961c423a79d234c8afecef {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor"} -C3L-01465.WGS.N C3L-01465 CCRCC WGS blood_normal CPT0086650002 CPT0086650002.WholeGenome.RP-1303.bam 71131354301 BAM aligned CPTAC3 b05dd77d-34ae-4616-a386-57e1ba2a9849 8ab3463e3a9c15795f5cfa55060776ec {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal"} -C3L-01465.WGS.N.hg38 C3L-01465 CCRCC WGS blood_normal CPT0086650002 7637521b-2766-41f0-a52a-ee21470742f8_gdc_realn.bam 107003199874 BAM harmonized CPTAC3 93b7d297-0402-49c4-9e9b-7d042bdf0835 734e53083a85c091640be007641ce3fe {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal"} -C3L-01465.WGS.T C3L-01465 CCRCC WGS tumor CPT0085790009 CPT0085790009.WholeGenome.RP-1303.bam 60889121893 BAM aligned CPTAC3 b7549863-fad3-4bcb-b025-5fbd91bbee87 9a4a60a8f9dabefbf88af51b678aba4c {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor"} -C3L-01465.WGS.T.hg38 C3L-01465 CCRCC WGS tumor CPT0085790009 f6aa2c77-2e64-4f87-ad54-445898578c3b_gdc_realn.bam 91795040015 BAM harmonized CPTAC3 1199eab5-2c3c-4ba9-9bc2-7a304a1020c4 fa787b999894251f43628436615bc74e {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor"} -C3L-01465.WXS.N C3L-01465 CCRCC WXS blood_normal CPT0086650002 CPT0086650002.WholeExome.RP-1303.bam 31326233183 BAM aligned CPTAC3 83202203-bade-4b94-845c-102741af1cd1 8dae158f62659f60f2c265b73336eb71 {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal"} -C3L-01465.WXS.N.hg38 C3L-01465 CCRCC WXS blood_normal CPT0086650002 7637521b-2766-41f0-a52a-ee21470742f8_gdc_realn.bam 42728680230 BAM harmonized CPTAC3 3292c635-792d-4fed-98a0-427b642aa691 b0d701ed1f0ad3847d9837d0887569ca {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal"} -C3L-01465.WXS.T C3L-01465 CCRCC WXS tumor CPT0085790009 CPT0085790009.WholeExome.RP-1303.bam 33766499675 BAM aligned CPTAC3 316b019b-b9ad-4134-bf68-882625f2489f 3a5601a245f958d97885df731762eda2 {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor"} -C3L-01465.WXS.T.hg38 C3L-01465 CCRCC WXS tumor CPT0085790009 f6aa2c77-2e64-4f87-ad54-445898578c3b_gdc_realn.bam 45861128809 BAM harmonized CPTAC3 4d8cf70f-c721-4a29-a9de-175fb4691bdc f18321a5675ed5355c81a997694bb7fc {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor"} -C3L-01467.MethArray.Green.T C3L-01467 CCRCC Methylation_Array tumor CPT0390040006 205589730117_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 cee054dc-22c5-41be-aa4a-4b2266a62eb2 eebc1f37fd69a72e93e543751f285d8a {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor"} -C3L-01467.MethArray.Red.T C3L-01467 CCRCC Methylation_Array tumor CPT0390040006 205589730117_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 26e14475-786f-4fe8-86a8-53d77b48c786 45a1732cc60399a9f5c63823a1b5c1ba {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor"} -C3L-01467.miRNA-Seq.A.hg38 C3L-01467 CCRCC miRNA-Seq tissue_normal CPT0390050005 0fdb2983-e3c7-45fe-b73b-b536aa47b225_mirnaseq_gdc_realn.bam 315260295 BAM harmonized CPTAC3 b8fe47f6-872a-40e0-937d-d37b2e71d22c fc48ee52509f428d13fe5578896250b5 {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01467.miRNA-Seq.S26_L002_R1.T C3L-01467 CCRCC miRNA-Seq tumor CPT0390040009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CCAACA_S26_L002_R1_001.unaln.bam 195288244 BAM S26_L002_R1 unaligned CPTAC3 6341bdc9-d815-46e0-96a5-c63b4525a4d2 2951c8d6598ad68b5061137b6311980b {"aliquot_tag": "ALQ_b2596647", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01467.miRNA-Seq.S28_L002_R1.A C3L-01467 CCRCC miRNA-Seq tissue_normal CPT0390050005 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTAGCT_S28_L002_R1_001.unaln.bam 287738370 BAM S28_L002_R1 unaligned CPTAC3 f302e14a-4a54-4614-a19f-ef8a560754a9 cf57c250492fd11e74c452744416a570 {"aliquot_tag": "ALQ_868f03dc", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01467.miRNA-Seq.T.hg38 C3L-01467 CCRCC miRNA-Seq tumor CPT0390040009 e3ef9cf7-a65f-4135-b87f-c23e9de7698d_mirnaseq_gdc_realn.bam 208245230 BAM harmonized CPTAC3 2b4f0c0c-3265-4cd2-98c4-a02a748d1bc3 541886a29903f1c24be8a004d35f2a18 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor"} -C3L-01467.RNA-Seq.chimeric.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.chimeric.gdc_realn.bam 142207145 BAM chimeric harmonized CPTAC3 3821acbb-c54d-4c11-9d94-9055b9c565fa 3c252fdfac499a96e513b92d5a3f6ff9 {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01467.RNA-Seq.chimeric.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.chimeric.gdc_realn.bam 276061689 BAM chimeric harmonized CPTAC3 bbdcb953-4bb0-419b-b279-1ca4b5fa6ff5 9a6ed9527dcb1f68cf0d6edc34bc9635 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor"} -C3L-01467.RNA-Seq.genomic.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.genomic.gdc_realn.bam 7854810328 BAM genomic harmonized CPTAC3 90c2c56b-8957-4d56-9a5a-1bfdb058b22f 19ed9cb10f031dfb4dc7f08ed1874d10 {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01467.RNA-Seq.genomic.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.genomic.gdc_realn.bam 6322300556 BAM genomic harmonized CPTAC3 ef8ce927-5591-495f-96be-0d71f0e89af3 f2e07ad85499701761453b99df544f15 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor"} -C3L-01467.RNA-Seq.S27_L008_R1.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R1_001.fastq.gz 3268952339 FASTQ S27_L008_R1 unaligned CPTAC3 3a0120b5-e773-43d4-8328-608c5be239f3 50805782a013a9cdf71598097f8d2249 {"aliquot_tag": "ALQ_868f03dc", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01467.RNA-Seq.S27_L008_R2.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R2_001.fastq.gz 3821259301 FASTQ S27_L008_R2 unaligned CPTAC3 b852f3ee-407f-4d93-b0a5-c9f0ab8ad7a9 870353d5da9bf80fd527b3e13da89bf9 {"aliquot_tag": "ALQ_868f03dc", "sample": "S27", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01467.RNA-Seq.S3_L001_R1.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R1_001.fastq.gz 3034562105 FASTQ S3_L001_R1 unaligned CPTAC3 57e34763-07a5-43f4-ba53-dade7666af99 970d0cb99b1e5acae1cee63791ad4bd0 {"aliquot_tag": "ALQ_b2596647", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01467.RNA-Seq.S3_L001_R2.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R2_001.fastq.gz 3413737915 FASTQ S3_L001_R2 unaligned CPTAC3 7c5f4de5-8492-4b48-a285-86cfb5ec1c64 eed8622986b7cfa85b023bf933123d22 {"aliquot_tag": "ALQ_b2596647", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01467.RNA-Seq.transcriptome.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.transcriptome.gdc_realn.bam 8552369332 BAM transcriptome harmonized CPTAC3 7be9299c-dbf9-4fac-b5c4-81ec131df495 3bf1cedad1c6436fd56df023a178cbab {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01467.RNA-Seq.transcriptome.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.transcriptome.gdc_realn.bam 7995471615 BAM transcriptome harmonized CPTAC3 2fbf54da-25fd-4837-a8eb-7445e012113b 3c0789dce8f71e1d18468e0446aede21 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor"} -C3L-01467.WGS.N C3L-01467 CCRCC WGS blood_normal CPT0390100002 CPT0390100002.WholeGenome.RP-2158.bam 23990076711 BAM aligned CPTAC3 8c86baec-7920-4697-93ea-433329756c00 420bbee15032655281670e7b1e71dcc9 {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01467.WGS.N.hg38 C3L-01467 CCRCC WGS blood_normal CPT0390100002 ef088a03-f3d5-4820-bc88-4836e07d98a4_wgs_gdc_realn.bam 73997069577 BAM harmonized CPTAC3 67827a64-47cf-4d3b-9c40-848baac6bce7 4c6cb4b7a61d691fc13ae8c3cbeb7d8b {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01467.WGS.T C3L-01467 CCRCC WGS tumor CPT0390040006 CPT0390040006.WholeGenome.RP-2158.bam 23708116710 BAM aligned CPTAC3 9f6cbe45-54a8-4b89-b4e7-f56634aff1a3 f4b1d1f59265922dfa5004373931e9f1 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor"} -C3L-01467.WGS.T.hg38 C3L-01467 CCRCC WGS tumor CPT0390040006 cd6dcb7c-3bbc-4839-b740-6189d822de00_wgs_gdc_realn.bam 71659386497 BAM harmonized CPTAC3 545b486f-acb4-40d2-b216-07c65845d02f 319b61265d3e7af797e950c2375ad7e4 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor"} -C3L-01467.WXS.N C3L-01467 CCRCC WXS blood_normal CPT0390100002 CPT0390100002.WholeExome.RP-1303.bam 21727867412 BAM aligned CPTAC3 168984e7-8ec0-4e6e-a1f2-00f1a3200fc8 452346678719cd1044a190d91f5d50f4 {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01467.WXS.N.hg38 C3L-01467 CCRCC WXS blood_normal CPT0390100002 ef088a03-f3d5-4820-bc88-4836e07d98a4_wxs_gdc_realn.bam 29908468127 BAM harmonized CPTAC3 face21d7-0412-46e2-92aa-e635885fb1ea 8c2fa6f0f05cc771043389266f72be94 {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01467.WXS.T C3L-01467 CCRCC WXS tumor CPT0390040006 CPT0390040006.WholeExome.RP-1303.bam 20389902793 BAM aligned CPTAC3 4db07585-1cef-40aa-bfd5-6874be906d0d 3f99d47db5a8917b7a7c39fbcfd7cc45 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor"} -C3L-01467.WXS.T.hg38 C3L-01467 CCRCC WXS tumor CPT0390040006 cd6dcb7c-3bbc-4839-b740-6189d822de00_wxs_gdc_realn.bam 28248985952 BAM harmonized CPTAC3 dd799f72-6585-4287-a674-bcfe0874b089 ccb7777eb8c68ee220301565e232ea46 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor"} -C3L-01469.MethArray.Green.T C3L-01469 CCRCC Methylation_Array tumor CPT0389960006 205555390118_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 427f2666-5ff1-4dc0-a12c-c4ee21b33758 d817b16f2f8ade701d08eb9b1076eac9 {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor"} -C3L-01469.MethArray.Red.T C3L-01469 CCRCC Methylation_Array tumor CPT0389960006 205555390118_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 bb3a613b-7585-497b-9126-5ebfbe237ebd e8bb1ead9ad41a34e6d8626695c7969d {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor"} -C3L-01469.miRNA-Seq.S25_L002_R1.T C3L-01469 CCRCC miRNA-Seq tumor CPT0389960009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CATTTT_S25_L002_R1_001.unaln.bam 313865480 BAM S25_L002_R1 unaligned CPTAC3 fb48fef1-a7e0-4bde-808a-c8816a4f42c9 af36f1abc6a8dfa0a21cb33d27bd6f6c {"aliquot_tag": "ALQ_b6a421a2", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01469.miRNA-Seq.T.hg38 C3L-01469 CCRCC miRNA-Seq tumor CPT0389960009 53070b5a-b6ef-43cb-ae80-09ed97d059fa_mirnaseq_gdc_realn.bam 342368308 BAM harmonized CPTAC3 6ca7807a-e585-4fb0-ae94-c344e65fc34e 53caf9c0d6bd3c5cf2458ac61108b9d2 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01469.RNA-Seq.chimeric.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.chimeric.gdc_realn.bam 350046696 BAM chimeric harmonized CPTAC3 91fcfdbb-c615-4bb4-ad40-b5a965d31b5d c776af278b888c7ece187c551c6d3ef9 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01469.RNA-Seq.genomic.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.genomic.gdc_realn.bam 8722053084 BAM genomic harmonized CPTAC3 40a1a365-79d3-4867-959e-3dad8a8ddd31 44a796bb6a4847d734fca5ead6498013 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01469.RNA-Seq.S1_L001_R1.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R1_001.fastq.gz 4226089393 FASTQ S1_L001_R1 unaligned CPTAC3 faac51ac-ce75-4211-be32-823eccae23b7 d96f217fc43b7905a9e1d3a711fe1d09 {"aliquot_tag": "ALQ_b6a421a2", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01469.RNA-Seq.S1_L001_R2.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R2_001.fastq.gz 4704241839 FASTQ S1_L001_R2 unaligned CPTAC3 50ffd64f-4028-4dd2-b0b4-1101ccfdbc75 6b33d1e85274580fab92a553fc8931c5 {"aliquot_tag": "ALQ_b6a421a2", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01469.RNA-Seq.transcriptome.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.transcriptome.gdc_realn.bam 11528882076 BAM transcriptome harmonized CPTAC3 51e4693f-214f-44ab-b9a5-326d4b59ec7c 2819c7f02416bafef124f421566f8a49 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor"} -C3L-01469.WGS.N C3L-01469 CCRCC WGS blood_normal CPT0390020002 CPT0390020002.WholeGenome.RP-2158.bam 32850453077 BAM aligned CPTAC3 d798d145-0d37-4cd7-a6ff-1a90178a7b20 de5df9b56ac85c47b4889a945f86e625 {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01469.WGS.N.hg38 C3L-01469 CCRCC WGS blood_normal CPT0390020002 c4919502-2b51-4cfa-9567-c6e3a211db9c_wgs_gdc_realn.bam 98876399452 BAM harmonized CPTAC3 ad9572e1-9b79-492c-b977-cc80307f7251 006e1c1f87a9dc18abe3be4791f44938 {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01469.WGS.T C3L-01469 CCRCC WGS tumor CPT0389960006 CPT0389960006.WholeGenome.RP-2158.bam 21520810421 BAM aligned CPTAC3 2853c525-61b4-46e9-8e02-8a0193ad8844 b1eff032f4c4c827d27b6b14218ff9cc {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor"} -C3L-01469.WGS.T.hg38 C3L-01469 CCRCC WGS tumor CPT0389960006 9f7f784f-fa97-4bc3-86d5-11a092887c00_wgs_gdc_realn.bam 64460051254 BAM harmonized CPTAC3 a1a1ac80-239b-425d-bd78-1dc1f86f5b13 254ae4e80dbe32cbdf4ed98798b26e4e {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor"} -C3L-01469.WXS.N C3L-01469 CCRCC WXS blood_normal CPT0390020002 CPT0390020002.WholeExome.RP-1303.bam 20844981276 BAM aligned CPTAC3 20de96fc-8a55-4803-9011-559296403a64 5939fff51294783180d105b08141e373 {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01469.WXS.N.hg38 C3L-01469 CCRCC WXS blood_normal CPT0390020002 c4919502-2b51-4cfa-9567-c6e3a211db9c_wxs_gdc_realn.bam 28562187347 BAM harmonized CPTAC3 75b766d2-7151-484c-88cc-6b6827b089d7 1d6566c66912fdc4ba70fbdd6f61d56f {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01469.WXS.T C3L-01469 CCRCC WXS tumor CPT0389960006 CPT0389960006.WholeExome.RP-1303.bam 22120202968 BAM aligned CPTAC3 d46aa473-23c6-4b55-9c09-618bba0f1766 398a576bbcf5510e850efff0c76a7021 {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor"} -C3L-01469.WXS.T.hg38 C3L-01469 CCRCC WXS tumor CPT0389960006 9f7f784f-fa97-4bc3-86d5-11a092887c00_wxs_gdc_realn.bam 30928051642 BAM harmonized CPTAC3 41ef7dab-f67b-46f8-9914-a63a47605833 d1b2c14ff7678fcbbc01fe38e3e5c9c2 {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor"} -C3L-01470.MethArray.Green.T C3L-01470 CCRCC Methylation_Array tumor CPT0085580009 202184900148_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 18d7bbe4-9acb-41d8-ab34-c09300866e2b df487d6675a0c3aedb706125dec9576c {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor"} -C3L-01470.MethArray.Red.T C3L-01470 CCRCC Methylation_Array tumor CPT0085580009 202184900148_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 6abd0a90-4a0a-4bbe-b5ce-cd823dd377bf 62c0cd4521cac6433ea44459704a1202 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor"} -C3L-01470.miRNA-Seq.S2_L008_R1.T C3L-01470 CCRCC miRNA-Seq tumor CPT0085580006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L008_R1_001.unaln.bam 215195902 BAM S2_L008_R1 unaligned CPTAC3 780f34d5-751b-445a-ab41-9710245248e5 c71ed73dd86181d4303ad3299be50bda {"aliquot_tag": "ALQ_10c41498", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01470.miRNA-Seq.T.hg38 C3L-01470 CCRCC miRNA-Seq tumor CPT0085580006 7d2010ed-2a00-4b43-9842-55711f93dfca_mirnaseq_gdc_realn.bam 241866693 BAM harmonized CPTAC3 6d7d13d9-1c87-4e95-bc78-def1e64a702e 68f6deff5695d4dc28dd977d3643ed71 {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor"} -C3L-01470.RNA-Seq.chimeric.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.chimeric.gdc_realn.bam 38223622 BAM chimeric harmonized CPTAC3 8f2b6cd2-8680-4f9c-895a-af871e70704f d49d6949ab48055297d0ff5dbd82036f {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor"} -C3L-01470.RNA-Seq.genomic.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.genomic.gdc_realn.bam 7504186886 BAM genomic harmonized CPTAC3 1bb96681-6ef7-41e0-8605-8a47ce88d99a 0497b5e3d958cfff7ca04c75f9041808 {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor"} -C3L-01470.RNA-Seq.S12_L003_R1.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R1_001.fastq.gz 3744221386 FASTQ S12_L003_R1 unaligned CPTAC3 9759d0b4-497d-49dc-8200-22451570cf81 3b7053905860a23cfd9b81485c9982dc {"aliquot_tag": "ALQ_10c41498", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01470.RNA-Seq.S12_L003_R2.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R2_001.fastq.gz 3972253455 FASTQ S12_L003_R2 unaligned CPTAC3 f769572b-2a4b-4b8e-8ff6-7b0a8a404c62 ba19d9523882db3ecc2e4d2708cd989d {"aliquot_tag": "ALQ_10c41498", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01470.RNA-Seq.transcriptome.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.transcriptome.gdc_realn.bam 9803460582 BAM transcriptome harmonized CPTAC3 19e35587-48bc-4f78-acb9-d1d2adea67d2 f1df9f1008c4eda20e1440a7f14974c3 {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor"} -C3L-01470.WGS.N C3L-01470 CCRCC WGS blood_normal CPT0086570002 CPT0086570002.WholeGenome.RP-1303.bam 65595805215 BAM aligned CPTAC3 e93011d0-0dbd-4ec8-9c16-0e3eb738b6fe ed2b3e22bbe6fe582213fffc4a8ec6ff {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01470.WGS.N.hg38 C3L-01470 CCRCC WGS blood_normal CPT0086570002 8de44709-a946-4db7-b5da-59703abe93b4_gdc_realn.bam 99349797270 BAM harmonized CPTAC3 55ed3ee4-ba5f-4347-83d4-98e7d1cabcad 8be281239022adac1276a0c4b6d44511 {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01470.WGS.T C3L-01470 CCRCC WGS tumor CPT0085580009 CPT0085580009.WholeGenome.RP-1303.bam 82740323787 BAM aligned CPTAC3 17aa60d9-0a28-4a9a-bde3-255a85fac974 7cfe30688fe069edb0017206f112a468 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor"} -C3L-01470.WGS.T.hg38 C3L-01470 CCRCC WGS tumor CPT0085580009 1102bb6d-67fa-48a6-a346-798aecc937ee_gdc_realn.bam 127101126454 BAM harmonized CPTAC3 d5e709d5-4b10-41f4-9585-882f49a81e8c 6d0dd33ee551f9093c32a6be74ace209 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor"} -C3L-01470.WXS.N C3L-01470 CCRCC WXS blood_normal CPT0086570002 CPT0086570002.WholeExome.RP-1303.bam 33538106243 BAM aligned CPTAC3 49bf25e6-8283-4e82-bc4c-7d5284a5d5cd 7be331af366e9598cd329fb3af8fcd62 {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01470.WXS.N.hg38 C3L-01470 CCRCC WXS blood_normal CPT0086570002 8de44709-a946-4db7-b5da-59703abe93b4_gdc_realn.bam 46736447632 BAM harmonized CPTAC3 a6077b6b-e305-49c3-b57d-05f967a1f938 75874174f1441953fce88ea9fcc63b8d {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01470.WXS.T C3L-01470 CCRCC WXS tumor CPT0085580009 CPT0085580009.WholeExome.RP-1303.bam 37494557851 BAM aligned CPTAC3 7d7d9780-9ad1-4a9d-a508-99281570bfde f570d37472e47723aed282ad5aa54215 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor"} -C3L-01470.WXS.T.hg38 C3L-01470 CCRCC WXS tumor CPT0085580009 1102bb6d-67fa-48a6-a346-798aecc937ee_gdc_realn.bam 51708510156 BAM harmonized CPTAC3 4586a671-da98-4185-b28b-875b72f5773e b65567aa6c7810790aa34196bb2f4729 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor"} -C3L-01553.MethArray.Green.T C3L-01553 CCRCC Methylation_Array tumor CPT0065930009 202163550072_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 1d7b5bc3-3cd0-4c8e-acab-844f4a428399 9cd58d2a2969ba55d02590347c3517ad {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor"} -C3L-01553.MethArray.Red.T C3L-01553 CCRCC Methylation_Array tumor CPT0065930009 202163550072_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 23ef3c24-3779-4993-b0e1-bc66fa6c0ce5 6a2064a8ecf2edfdbdc4d2bfc530010c {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor"} -C3L-01553.miRNA-Seq.S10_L001_R1.T C3L-01553 CCRCC miRNA-Seq tumor CPT0065930006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L001_R1_001.unaln.bam 215893831 BAM S10_L001_R1 unaligned CPTAC3 6862d8f3-bfd6-4c78-b2a3-131c6de57de9 13e8433429f29ab94dac732d96e1658a {"aliquot_tag": "ALQ_55cf7c0", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01553.miRNA-Seq.T.hg38 C3L-01553 CCRCC miRNA-Seq tumor CPT0065930006 cf3e0964-5b63-4083-88be-e6b111e7a110_mirnaseq_gdc_realn.bam 239044225 BAM harmonized CPTAC3 80b98e17-edae-4854-895f-8e6e7603ac15 88373e9e5a219f682b6cc05123dbe0cc {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor"} -C3L-01553.RNA-Seq.chimeric.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.chimeric.gdc_realn.bam 22312832 BAM chimeric harmonized CPTAC3 65cc76d9-4003-4bff-9d87-2e1ab9409f5b b42954bf5d75515a2429a7346c92297a {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor"} -C3L-01553.RNA-Seq.genomic.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.genomic.gdc_realn.bam 6317313849 BAM genomic harmonized CPTAC3 39839e30-dc84-4973-b222-94b7d6f96582 c014c47b8d5fa2fcc0ed4a75b895b853 {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor"} -C3L-01553.RNA-Seq.S2_L001_R1.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R1_001.fastq.gz 2898004043 FASTQ S2_L001_R1 unaligned CPTAC3 88f1547d-1fe2-4d7f-b9d9-0e31082648e4 455fa6275226b7092eb689e41fe67cf2 {"aliquot_tag": "ALQ_55cf7c0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01553.RNA-Seq.S2_L001_R2.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R2_001.fastq.gz 3031203940 FASTQ S2_L001_R2 unaligned CPTAC3 b95d6272-2af8-4cdb-8af2-3e30c8cca1fc 1ea0adf66c4b42d4e613a23494afde89 {"aliquot_tag": "ALQ_55cf7c0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01553.RNA-Seq.transcriptome.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.transcriptome.gdc_realn.bam 9391726705 BAM transcriptome harmonized CPTAC3 49c53332-89a7-4e08-8b11-a501ef82e231 d73d0454c12e66cabd005a950b30252a {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor"} -C3L-01553.WGS.N C3L-01553 CCRCC WGS blood_normal CPT0067730002 CPT0067730002.WholeGenome.RP-1303.bam 62449487609 BAM aligned CPTAC3 de931e73-d1d6-401e-8ffb-6e7bab8792a6 9d6b2c4e332199544a071c6172f44d4c {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal"} -C3L-01553.WGS.N.hg38 C3L-01553 CCRCC WGS blood_normal CPT0067730002 f6acdb05-d0ca-4749-8b17-c1af50669ffd_gdc_realn.bam 95102968730 BAM harmonized CPTAC3 5701e656-f407-4a48-9540-92e70295ee88 95f4682dec0ce92351822a27c8284fa3 {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal"} -C3L-01553.WGS.T C3L-01553 CCRCC WGS tumor CPT0065930009 CPT0065930009.WholeGenome.RP-1303.bam 85787134965 BAM aligned CPTAC3 5dd8ab2b-f85f-4f0d-ba06-440f2d3d51e0 fa39a2c29dc898f03331c86357015b5c {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor"} -C3L-01553.WGS.T.hg38 C3L-01553 CCRCC WGS tumor CPT0065930009 e1873371-dfb8-4bcf-9862-d45b58e04f41_gdc_realn.bam 126318259401 BAM harmonized CPTAC3 ca0c26c3-7726-4424-978d-05e3957d2108 a072513f017eada44448c971fb0bf4bd {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor"} -C3L-01553.WXS.N C3L-01553 CCRCC WXS blood_normal CPT0067730002 CPT0067730002.WholeExome.RP-1303.bam 29388884992 BAM aligned CPTAC3 9959f8af-0878-4873-8c27-5384217b2fb1 bb4f3d852452ec8d359f2b7f542785c5 {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal"} -C3L-01553.WXS.N.hg38 C3L-01553 CCRCC WXS blood_normal CPT0067730002 f6acdb05-d0ca-4749-8b17-c1af50669ffd_gdc_realn.bam 39340329503 BAM harmonized CPTAC3 c251e128-10bd-4cac-956d-3bee70e4114e 693c4ff92fc3b47e5fba47e6111bfd3f {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal"} -C3L-01553.WXS.T C3L-01553 CCRCC WXS tumor CPT0065930009 CPT0065930009.WholeExome.RP-1303.bam 21329147214 BAM aligned CPTAC3 7540d89c-32dd-4231-83dc-9c8e6b799ff3 b91c2ca540652038454337cc3850c244 {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor"} -C3L-01553.WXS.T.hg38 C3L-01553 CCRCC WXS tumor CPT0065930009 e1873371-dfb8-4bcf-9862-d45b58e04f41_gdc_realn.bam 29376112728 BAM harmonized CPTAC3 4d2af406-3837-4470-b125-a4c2ecb3140b f0db9bc5a780e8a3e8ef0a833dd27bc3 {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor"} -C3L-01557.MethArray.Green.T C3L-01557 CCRCC Methylation_Array tumor CPT0085670009 202184900105_R04C01_Grn.idat 13676222 IDAT Green NA CPTAC3 bb9c029b-8648-4b5c-b0c8-2b9d40ebc204 ece52f8f4f3f91e009b5cb1c1690d6c9 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor"} -C3L-01557.MethArray.Red.T C3L-01557 CCRCC Methylation_Array tumor CPT0085670009 202184900105_R04C01_Red.idat 13676222 IDAT Red NA CPTAC3 3cb4c9a7-1ca6-4738-a15c-8c72abc70401 753edbce384aa37bdcb3f7013f7cf00e {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor"} -C3L-01557.miRNA-Seq.S3_L008_R1.T C3L-01557 CCRCC miRNA-Seq tumor CPT0085670006 181108_UNC31-K00269_0163_BH23TVBBXY_TTAGGC_S3_L008_R1_001.unaln.bam 183355573 BAM S3_L008_R1 unaligned CPTAC3 4ac0cee1-2bd2-4bb5-8816-c955b0482422 6e4dcd295e11592388ac8d8cd220c2b5 {"aliquot_tag": "ALQ_1400f1e7", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01557.miRNA-Seq.T.hg38 C3L-01557 CCRCC miRNA-Seq tumor CPT0085670006 e411f73b-a242-423c-84bd-922e951d45c6_mirnaseq_gdc_realn.bam 201372835 BAM harmonized CPTAC3 e7264cdc-6baa-498b-aa94-e7e677528f22 20c9fea387c0bc74fcd9ac0e20bf65ff {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor"} -C3L-01557.RNA-Seq.chimeric.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.chimeric.gdc_realn.bam 38561353 BAM chimeric harmonized CPTAC3 f81c31fc-1820-4f05-98c1-bbe5b28724d5 8c88289721e8cb247392c873ae21f23f {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor"} -C3L-01557.RNA-Seq.genomic.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.genomic.gdc_realn.bam 8109427041 BAM genomic harmonized CPTAC3 ad9a640c-4ef0-4807-b39d-91681525d287 e9f7000e38f26bc8d38f74c067b77660 {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor"} -C3L-01557.RNA-Seq.S5_L002_R1.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 4010965070 FASTQ S5_L002_R1 unaligned CPTAC3 9737ca2e-f500-45d5-b19f-d14a424cb8af 254ca5607eaad506a2ffb799bd9be0a8 {"aliquot_tag": "ALQ_1400f1e7", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01557.RNA-Seq.S5_L002_R2.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4415237814 FASTQ S5_L002_R2 unaligned CPTAC3 34d4bcaf-18d8-4e02-aeee-8e3c0e0aafac 579650b06a6816424e407d28b263454e {"aliquot_tag": "ALQ_1400f1e7", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01557.RNA-Seq.transcriptome.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.transcriptome.gdc_realn.bam 11484970206 BAM transcriptome harmonized CPTAC3 7ad37908-042c-4aa5-a244-8a5f293bf210 3552a5544aaff5f0838fa8f2984bd204 {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor"} -C3L-01557.WGS.N C3L-01557 CCRCC WGS blood_normal CPT0086610002 CPT0086610002.WholeGenome.RP-1303.bam 81848564729 BAM aligned CPTAC3 b5f15ceb-e464-40c3-ba3f-80b6a129bd86 0471f6a2497aa29292b3a416d2dc0aad {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal"} -C3L-01557.WGS.N.hg38 C3L-01557 CCRCC WGS blood_normal CPT0086610002 61c4ce19-1344-4ae6-be82-de54cc998174_gdc_realn.bam 122945078992 BAM harmonized CPTAC3 ed4f7914-5f9c-4f7f-9cea-57c3509be67b 69dcf827e3a823db2a81690c9d44e06b {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal"} -C3L-01557.WGS.T C3L-01557 CCRCC WGS tumor CPT0085670009 CPT0085670009.WholeGenome.RP-1303.bam 60851485870 BAM aligned CPTAC3 1a0d04d2-3eb3-4a9d-93c0-70888e7a4b03 d58af2e3cf042ffdd3037e1e732c2167 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor"} -C3L-01557.WGS.T.hg38 C3L-01557 CCRCC WGS tumor CPT0085670009 6e1356e3-0fdb-49b2-b2b9-b40c87cc3ba4_gdc_realn.bam 91106368828 BAM harmonized CPTAC3 55fd5faf-4191-42b1-a81c-2a01d6135dec b77d5b8b3ee966079a4f8c8e08408676 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor"} -C3L-01557.WXS.N C3L-01557 CCRCC WXS blood_normal CPT0086610002 CPT0086610002.WholeExome.RP-1303.bam 33048989827 BAM aligned CPTAC3 7e3fad0a-794a-4f3d-98f1-90a255deacbc ce71a91941b367683c964e78ed2cb3be {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal"} -C3L-01557.WXS.N.hg38 C3L-01557 CCRCC WXS blood_normal CPT0086610002 61c4ce19-1344-4ae6-be82-de54cc998174_gdc_realn.bam 44820370719 BAM harmonized CPTAC3 4f8096cc-4038-4ce5-a4fe-54fe805d544a d334d8414477ec25490b3c78007305cc {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal"} -C3L-01557.WXS.T C3L-01557 CCRCC WXS tumor CPT0085670009 CPT0085670009.WholeExome.RP-1303.bam 29713910902 BAM aligned CPTAC3 bfc7eaa6-b9be-412c-a742-19f574e08dc1 e7f8ef69b56e6fc4d37abce95347e589 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor"} -C3L-01557.WXS.T.hg38 C3L-01557 CCRCC WXS tumor CPT0085670009 6e1356e3-0fdb-49b2-b2b9-b40c87cc3ba4_gdc_realn.bam 41192205755 BAM harmonized CPTAC3 9438e085-90a5-4548-a9cf-05ccc6153f25 78a931c1065dd54cf4c41f893dfc3d09 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor"} -C3L-01558.MethArray.Green.T C3L-01558 CCRCC Methylation_Array tumor CPT0390330006 205555380179_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5223e1b9-93d1-4efd-b786-b3bb5cb13720 cd5f0d88fcfb719fdbcf6488fb6de6fd {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor"} -C3L-01558.MethArray.Red.T C3L-01558 CCRCC Methylation_Array tumor CPT0390330006 205555380179_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 7328d370-0913-4e10-8d70-789d61ef625d 0fa7aee71ef39d924ba0d4934494f21b {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor"} -C3L-01558.miRNA-Seq.S33_L002_R1.T C3L-01558 CCRCC miRNA-Seq tumor CPT0390330009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TACAGC_S33_L002_R1_001.unaln.bam 321717925 BAM S33_L002_R1 unaligned CPTAC3 2a1ecc42-c6a1-43d5-8cdd-a23fe6823867 7dd5bae1412d1417632476ecaba431cc {"aliquot_tag": "ALQ_86edc8f9", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01558.miRNA-Seq.T.hg38 C3L-01558 CCRCC miRNA-Seq tumor CPT0390330009 83796f24-269d-454d-a138-462667cd5454_mirnaseq_gdc_realn.bam 339645710 BAM harmonized CPTAC3 a9933d44-40ef-4c50-9cc7-b223968846f7 5cad7a1ab5b67499497ad3f57826986c {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor"} -C3L-01558.RNA-Seq.chimeric.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.chimeric.gdc_realn.bam 472896402 BAM chimeric harmonized CPTAC3 d74809bb-952a-473f-b60d-cd93e3e32dbc 9ed773f210c406f7ad5240f9534221dd {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor"} -C3L-01558.RNA-Seq.genomic.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.genomic.gdc_realn.bam 8100669314 BAM genomic harmonized CPTAC3 24bca6a1-0fc7-45ec-b881-b587302e39d7 e94229a06334a06277b9c705dbac83e4 {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor"} -C3L-01558.RNA-Seq.S22_L007_R1.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R1_001.fastq.gz 3977878573 FASTQ S22_L007_R1 unaligned CPTAC3 93c8433b-f362-440f-894a-3483f9ae9373 aa045fc124118949a1f6c3f3ef3d8d4e {"aliquot_tag": "ALQ_86edc8f9", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01558.RNA-Seq.S22_L007_R2.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R2_001.fastq.gz 4353477130 FASTQ S22_L007_R2 unaligned CPTAC3 efd6bdca-6cde-4b15-9195-90190ed25cc9 d4921d2acf9d37367ab2358300f02831 {"aliquot_tag": "ALQ_86edc8f9", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01558.RNA-Seq.transcriptome.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.transcriptome.gdc_realn.bam 9955619486 BAM transcriptome harmonized CPTAC3 77b19519-4d0a-454b-9487-88d376098a81 53259e266364c1fa798c38a5da4989e7 {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor"} -C3L-01558.WGS.N C3L-01558 CCRCC WGS blood_normal CPT0390390002 CPT0390390002.WholeGenome.RP-2158.bam 26076992044 BAM aligned CPTAC3 f49c8a56-2ff4-42a9-9777-bd288d6bf342 5d3e79cabe9257988332e823e8298ce4 {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01558.WGS.N.hg38 C3L-01558 CCRCC WGS blood_normal CPT0390390002 5a2482f4-c011-4f2f-80e5-dbfee08aae1b_wgs_gdc_realn.bam 80433406157 BAM harmonized CPTAC3 a0ed1560-7e6a-4e0a-8c70-b20982be37de b4940386e8933065a5a3082d9723c00a {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01558.WGS.T C3L-01558 CCRCC WGS tumor CPT0390330006 CPT0390330006.WholeGenome.RP-2158.bam 25751515320 BAM aligned CPTAC3 38182611-5069-4cd7-a7c7-6067da7af6b1 c08a993a0b5c74477566bd2534c70cfa {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor"} -C3L-01558.WGS.T.hg38 C3L-01558 CCRCC WGS tumor CPT0390330006 f849a79f-ed8e-4585-8ed7-621eb60f38cd_wgs_gdc_realn.bam 77063641349 BAM harmonized CPTAC3 8678e299-7b61-4a05-80a6-9d99bca86dd3 d71c0e5efacf2a760c4b606410ceb29c {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor"} -C3L-01558.WXS.N C3L-01558 CCRCC WXS blood_normal CPT0390390002 CPT0390390002.WholeExome.RP-1303.bam 34225155112 BAM aligned CPTAC3 a8caa63e-d3cc-412b-8456-f7c11638f0ba cb9bfc6dae9d94ebc1691d5377c8829f {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01558.WXS.N.hg38 C3L-01558 CCRCC WXS blood_normal CPT0390390002 5a2482f4-c011-4f2f-80e5-dbfee08aae1b_wxs_gdc_realn.bam 46058570956 BAM harmonized CPTAC3 f46d2e18-eaf2-4fee-abd6-7bd4b48614b1 e71014fa596d83dcdf993d7247c56edc {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01558.WXS.T C3L-01558 CCRCC WXS tumor CPT0390330006 CPT0390330006.WholeExome.RP-1303.bam 27629571305 BAM aligned CPTAC3 079f83c3-4342-4592-a54e-44a5a7f13742 f26713ed65dbc98a37cc2f3aec0c6fcc {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor"} -C3L-01558.WXS.T.hg38 C3L-01558 CCRCC WXS tumor CPT0390330006 f849a79f-ed8e-4585-8ed7-621eb60f38cd_wxs_gdc_realn.bam 37797735335 BAM harmonized CPTAC3 e4985b2c-c4a9-4ea8-8011-38979341cca8 4c4c491bae1f9147d3e8c0fa1359f0dd {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor"} -C3L-01560.MethArray.Green.T C3L-01560 CCRCC Methylation_Array tumor CPT0086030009 202176290087_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 605a6eaf-2a65-4d44-8fce-27c7e0616992 2105a5aebbf18e24df679430dac19288 {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor"} -C3L-01560.MethArray.Red.T C3L-01560 CCRCC Methylation_Array tumor CPT0086030009 202176290087_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 9f38d43a-834a-4e04-9372-e242dc319db4 8902b0f5924ed7892fa2755ba8097ddf {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor"} -C3L-01560.miRNA-Seq.S48_L002_R1.T C3L-01560 CCRCC miRNA-Seq tumor CPT0086030006 181113_UNC31-K00269_0164_AH23NNBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 210241325 BAM S48_L002_R1 unaligned CPTAC3 2fefd23c-3065-4b98-a1c2-e7481148bdf9 7eb36f7360e1fbb051630c32487e4408 {"aliquot_tag": "ALQ_631aea7", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01560.miRNA-Seq.T.hg38 C3L-01560 CCRCC miRNA-Seq tumor CPT0086030006 3d506b8a-4f54-46eb-b3d6-6a793bec1640_mirnaseq_gdc_realn.bam 229601597 BAM harmonized CPTAC3 1781d3a0-f0d4-4258-aea9-5169b06806fe ef797b9b399a7f77674c467c505fb726 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor"} -C3L-01560.RNA-Seq.chimeric.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.chimeric.gdc_realn.bam 44035878 BAM chimeric harmonized CPTAC3 288438a6-79f6-4806-86b1-2e3d4c32d27b cc5a9322d088f7c369612e3b2993be67 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor"} -C3L-01560.RNA-Seq.genomic.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.genomic.gdc_realn.bam 9612780829 BAM genomic harmonized CPTAC3 9c2c397f-23fd-4643-b6f4-1e3af764f572 fe423768bc6788fbb820d636be2137a5 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor"} -C3L-01560.RNA-Seq.S2_L001_R1.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4641575499 FASTQ S2_L001_R1 unaligned CPTAC3 db9b8954-51ad-4c21-8c8e-3f2469dfa347 617f48e835b8d6f8ac012f596684d039 {"aliquot_tag": "ALQ_631aea7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01560.RNA-Seq.S2_L001_R2.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5081432549 FASTQ S2_L001_R2 unaligned CPTAC3 accf0284-6fcf-48c4-8438-5d31e3b84768 281f7e4ed4a8ae214b06162a4942fc7b {"aliquot_tag": "ALQ_631aea7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01560.RNA-Seq.transcriptome.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.transcriptome.gdc_realn.bam 12794964599 BAM transcriptome harmonized CPTAC3 9d601fb9-8ab9-4e6c-bf9f-8d7996b85094 b0400fbc0bff561f761f552ffe086ab4 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor"} -C3L-01560.WGS.N C3L-01560 CCRCC WGS blood_normal CPT0086720001 CPT0086720001.WholeGenome.RP-1303.bam 64782999863 BAM aligned CPTAC3 8548b067-86ed-4035-aecd-a144f09ba55d 12264e5b37e3075a152528c85119a39b {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01560.WGS.N.hg38 C3L-01560 CCRCC WGS blood_normal CPT0086720001 91858a3e-1ed3-4dd8-ae19-b5cf5123ce6f_gdc_realn.bam 97760578671 BAM harmonized CPTAC3 0b520f15-e3fb-431e-bc04-bb471589cceb 51768fab5c2206c29a6fac253d644435 {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01560.WGS.T C3L-01560 CCRCC WGS tumor CPT0086030009 CPT0086030009.WholeGenome.RP-1303.bam 75565265727 BAM aligned CPTAC3 f473f386-fd67-433c-8d5b-63faae871e87 48d50ce37fffc2ec8143180ff74eec5c {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor"} -C3L-01560.WGS.T.hg38 C3L-01560 CCRCC WGS tumor CPT0086030009 6fb2d180-e432-450f-81c9-2905ce7fc8af_gdc_realn.bam 112550979446 BAM harmonized CPTAC3 b7c6ca7c-21db-4103-ae6f-0de9389ece8b 5d309b6e940d01ad5a64a376c49cc3f8 {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor"} -C3L-01560.WXS.N C3L-01560 CCRCC WXS blood_normal CPT0086720001 CPT0086720001.WholeExome.RP-1303.bam 34680641576 BAM aligned CPTAC3 78009786-949d-47d6-928e-4411f0d74f27 b3d0846e70f1f56af25a83f4a4df7760 {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01560.WXS.N.hg38 C3L-01560 CCRCC WXS blood_normal CPT0086720001 91858a3e-1ed3-4dd8-ae19-b5cf5123ce6f_gdc_realn.bam 47512651042 BAM harmonized CPTAC3 9394759e-b0e8-4e64-89d6-04a796969793 7b413dfd0a03822a6682ca3c40087b23 {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01560.WXS.T C3L-01560 CCRCC WXS tumor CPT0086030009 CPT0086030009.WholeExome.RP-1303.bam 30606178111 BAM aligned CPTAC3 dc50a2bc-2a57-410e-b5bc-2be5143c1640 8fc56c0c135ec6a94a7ecac294b7a574 {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor"} -C3L-01560.WXS.T.hg38 C3L-01560 CCRCC WXS tumor CPT0086030009 6fb2d180-e432-450f-81c9-2905ce7fc8af_gdc_realn.bam 42239001120 BAM harmonized CPTAC3 9300a20b-9b5b-4882-b110-4589f417a06d 723ace31f701785de5c40f31cd43008b {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor"} -C3L-01598.ADD_813ae14b.MethArray.Green.T C3L-01598 PDA Methylation_Array tumor CPT0091660009 202234370091_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 27baaf53-cf76-46d1-b6ce-7b3ad19f0448 9386dae645bd95b14aafe08342aa0abb {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01598.ADD_813ae14b.MethArray.Red.T C3L-01598 PDA Methylation_Array tumor CPT0091660009 202234370091_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 287d8fca-94a2-46f4-acac-8cbb4939ba11 4000d8fb8e54c01217bea32d0e9e6ea6 {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01598.ADD_813ae14b.WGS.T C3L-01598 PDA WGS tumor CPT0091660009 CPT0091660009.WholeGenome.RP-1303.bam 62518760424 BAM aligned CPTAC3 d4d6ca7f-9541-431a-9cd3-3eb3d6708ff8 7a487acd0878480351aa16846666e64a {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01598.ADD_813ae14b.WGS.T.hg38 C3L-01598 PDA WGS tumor CPT0091660009 bac77f65-6e9c-4500-aebb-e5a01555c606_wgs_gdc_realn.bam 90821592426 BAM harmonized CPTAC3 8fd1e997-179f-45e1-9fd4-6b0568213065 5e3dd3e988891a85813be9609ce6039b {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01598.ADD_813ae14b.WXS.T C3L-01598 PDA WXS tumor CPT0091660009 CPT0091660009.WholeExome.RP-1303.bam 42562720654 BAM aligned CPTAC3 c4d5e807-e4e0-43f2-8c32-de2e48cffa13 955ece3c35f222b8eec518aaa94e0dda {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01598.ADD_813ae14b.WXS.T.hg38 C3L-01598 PDA WXS tumor CPT0091660009 bac77f65-6e9c-4500-aebb-e5a01555c606_wxs_gdc_realn.bam 58520503197 BAM harmonized CPTAC3 e7220b9c-9aa8-42e8-8edc-4a01172ae221 4d5a1fd85f64281e7d8990ee73ee794c {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01598.MethArray.Green.A C3L-01598 PDA Methylation_Array tissue_normal CPT0091680006 203561620091_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 5b8f2849-6a6f-42e0-89fe-443a53fcd1ce af6b5bf13476b062951ae16ab36f9efc {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01598.MethArray.Red.A C3L-01598 PDA Methylation_Array tissue_normal CPT0091680006 203561620091_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 6af79e4b-983a-4cc3-bf30-b6a044b297db 30c536430e9692fca4a91329585d1a2f {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01598.miRNA-Seq.S16_L006_R1.T C3L-01598 PDA miRNA-Seq tumor CPT0091660006 180828_UNC32-K00270_0112_AHWTLNBBXX_ACTTGA_S16_L006_R1_001.unaln.bam 230053299 BAM S16_L006_R1 unaligned CPTAC3 ccae5475-86c2-4a4a-9ba5-6d471b414810 9ecafc8e6218277a9df29e836b6845f7 {"aliquot_tag": "ALQ_1185fcda", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01598.miRNA-Seq.T.hg38 C3L-01598 PDA miRNA-Seq tumor CPT0091660006 96fdce6d-82ff-4882-bd92-2156325ae4eb_mirnaseq_gdc_realn.bam 259370167 BAM harmonized CPTAC3 a0f984c1-b0eb-4061-b328-97194a630664 b9a2591cbb13d7fe85a1b3db3d3eecd2 {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor"} -C3L-01598.RNA-Seq.chimeric.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.chimeric.gdc_realn.bam 43173440 BAM chimeric harmonized CPTAC3 ac6185fb-1287-4efd-bedd-1654533be2a2 9e6f2070d1ae298857c203ef958319dc {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor"} -C3L-01598.RNA-Seq.genomic.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.genomic.gdc_realn.bam 9944112917 BAM genomic harmonized CPTAC3 18fd8c43-23d4-4f49-ae1f-ba2a698713cd 965e7dd258aa87725d978f0801173951 {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor"} -C3L-01598.RNA-Seq.S4_L001_R1.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 4147745309 FASTQ S4_L001_R1 unaligned CPTAC3 db006b75-16be-4d3c-8eb1-7f37bb7992a5 89b5ab5a01bff50a67fd37db0e56143d {"aliquot_tag": "ALQ_1185fcda", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01598.RNA-Seq.S4_L001_R2.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 4720778051 FASTQ S4_L001_R2 unaligned CPTAC3 6a133ab8-8d0f-4a87-abde-f9e1fe9ac3bf 491359935c6df43908dab9c189901b74 {"aliquot_tag": "ALQ_1185fcda", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01598.RNA-Seq.transcriptome.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.transcriptome.gdc_realn.bam 12140412834 BAM transcriptome harmonized CPTAC3 ccda1c8e-31f5-45dc-84f1-9bc3965ba9d9 99307777d31f6e3495da4be896b0428d {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor"} -C3L-01598.Targeted.T C3L-01598 PDA Targeted_Sequencing tumor CPT0091660009_1 CPT0091660009_1.CustomSelection.RP-1303.PDO-18786.bam 5297055391 BAM aligned CPTAC3 036c4a6e-89f6-4723-a1d0-0d1dbe0965bc 1f4bc27f72b4ddba53f10b3cf596c1d9 {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor"} -C3L-01598.Targeted.T.hg38 C3L-01598 PDA Targeted_Sequencing tumor CPT0091660009_1 15814773-2f11-40f1-a6fb-d14270400e3a_targetedsequencing_gdc_realn.bam 7432931261 BAM harmonized CPTAC3 255efabd-6585-4f44-b2c4-5dd0c810fe8c b02e12348e0bc5ed7a513844cd95677a {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor"} -C3L-01598.WGS.A C3L-01598 PDA WGS tissue_normal CPT0091680006 CPT0091680006.WholeGenome.RP-1303.bam 58034459122 BAM aligned CPTAC3 55cc1725-7f27-43d7-999a-adc68eba46ce 8d5d79eb325a90eae27746883b257943 {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01598.WGS.A.hg38 C3L-01598 PDA WGS tissue_normal CPT0091680006 fd5ef7cc-8d76-4619-bb47-38e0b0cc00f7_wgs_gdc_realn.bam 85420353269 BAM harmonized CPTAC3 a9641e05-ac5c-4ec4-9a45-6ec957ad6171 8d2d2eb5b4634a6301345306428e641e {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01598.WGS.N C3L-01598 PDA WGS blood_normal CPT0093640002 CPT0093640002.WholeGenome.RP-1303.bam 57975403250 BAM aligned CPTAC3 9ea06234-c50a-42ce-9586-195deb3249f7 190385afa2616399fb33f0bcff1eb97c {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01598.WGS.N.hg38 C3L-01598 PDA WGS blood_normal CPT0093640002 95e7a2ce-67b2-45c6-b20e-d9ae349d508a_wgs_gdc_realn.bam 84849812961 BAM harmonized CPTAC3 b159c90f-e348-4daa-a4cb-180d7ef7638b 339e94366a207b5d1c9bce4ac6ae0c46 {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01598.WXS.A C3L-01598 PDA WXS tissue_normal CPT0091680006 CPT0091680006.WholeExome.RP-1303.bam 28005938891 BAM aligned CPTAC3 26f794f8-6e06-4ff5-8048-2fd07c28a0ee c2bbdacbadb1c86d1f22d807246e5ebb {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01598.WXS.A.hg38 C3L-01598 PDA WXS tissue_normal CPT0091680006 fd5ef7cc-8d76-4619-bb47-38e0b0cc00f7_wxs_gdc_realn.bam 37969740605 BAM harmonized CPTAC3 24e8e247-b58d-4b2d-ae7c-8155b7f22c85 77e96264e6c98ef70f77f45a7fa3ba3f {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01598.WXS.N C3L-01598 PDA WXS blood_normal CPT0093640002 CPT0093640002.WholeExome.RP-1303.bam 42428952772 BAM aligned CPTAC3 a068c125-251e-490e-bf38-a426bb839c39 7b0ed7af37b64f91a9cbd8998c350b25 {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01598.WXS.N.hg38 C3L-01598 PDA WXS blood_normal CPT0093640002 95e7a2ce-67b2-45c6-b20e-d9ae349d508a_wxs_gdc_realn.bam 58217784254 BAM harmonized CPTAC3 a90fde09-f8af-4195-b625-30d504f8d1e2 a654d0f92d8191b18598d7e2f27df10b {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01598.WXS.T C3L-01598 PDA WXS tumor CPT0091660009_1 CPT0091660009_1.WholeExome.RP-1303.bam 69160189378 BAM aligned CPTAC3 414e19b6-b45b-470d-bed4-be5259166039 2a70655ea6b6e7346419c8eb9cb09562 {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor"} -C3L-01598.WXS.T.hg38 C3L-01598 PDA WXS tumor CPT0091660009_1 15814773-2f11-40f1-a6fb-d14270400e3a_wxs_gdc_realn.bam 94515099740 BAM harmonized CPTAC3 a8c21a6b-9229-475c-a9a3-6497efa02c38 7c72ee72821625863bbc7fd2482ecf6a {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor"} -C3L-01599.MethArray.Green.T C3L-01599 UCEC Methylation_Array tumor CPT0087260009 202184900148_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 7fa67a9f-76f0-414e-a58b-ce8624051be7 c65184e5cb4ef4b3c7439d31cee97441 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor"} -C3L-01599.MethArray.Red.T C3L-01599 UCEC Methylation_Array tumor CPT0087260009 202184900148_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 54f67752-b6c5-4243-ba79-e3bb1462c888 8e3cef59067945dc1617dfb8175c1741 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor"} -C3L-01599.miRNA-Seq.S1_L008_R1.T C3L-01599 UCEC miRNA-Seq tumor CPT0087260006 181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L008_R1_001.unaln.bam 190013701 BAM S1_L008_R1 unaligned CPTAC3 604485c8-d180-41f4-bff9-3e554b4888e0 2ae9b6e347ceb8e4662bca5351cc9d05 {"aliquot_tag": "ALQ_256e8b68", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01599.miRNA-Seq.T.hg38 C3L-01599 UCEC miRNA-Seq tumor CPT0087260006 606bc1eb-f5a2-4460-8bbe-22251e7afab4_mirnaseq_gdc_realn.bam 208376458 BAM harmonized CPTAC3 6fb0c4a5-f822-440f-b85c-61f911bc447f c504cccdfbd199c59f2f47ab9b0edad4 {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.chimeric.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.chimeric.gdc_realn.bam 27404951 BAM chimeric harmonized CPTAC3 270d5218-fcc6-4902-b15e-ce9e8918f7b0 9483f52dfa868955f10ecd7d368993dc {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.chimeric.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.chimeric.gdc_realn.bam 148009597 BAM chimeric harmonized CPTAC3 b9773c17-d00d-4f87-9eca-1c93af409dd2 7d79c1abbfc46ba04d1897692d32e81f {"aliquot_tag": "ALQ_273033af", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.genomic.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.genomic.gdc_realn.bam 7093176807 BAM genomic harmonized CPTAC3 af6c1d49-05d2-4aa2-8495-5e5a0dc80b4b 1d5ca2e7c44b754ca000a6808c859359 {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.genomic.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.genomic.gdc_realn.bam 8270590150 BAM genomic harmonized CPTAC3 b1f37ba8-32ae-4acc-afb2-48b4e437cf85 3124ec34cbd83c50866be67d256ee53f {"aliquot_tag": "ALQ_273033af", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.S10_L003_R1.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3425773606 FASTQ S10_L003_R1 unaligned CPTAC3 20741a92-c13e-4dfb-85e3-6726c46ad318 b353f22c29f4e1a2cbaffd5e1e9e4c5a {"aliquot_tag": "ALQ_256e8b68", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.S10_L003_R2.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3732759221 FASTQ S10_L003_R2 unaligned CPTAC3 ed63223c-b578-4071-bdf8-178a21e5e032 ef1115825dff6c567a46fb27593dc62e {"aliquot_tag": "ALQ_256e8b68", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.S58_R1.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R1_001.fastq.gz 4969455566 FASTQ S58_R1 unaligned CPTAC3 09f10941-42fe-47bb-a170-3fa0970bead9 63820604b14480ed90179b176f2f94eb {"aliquot_tag": "ALQ_273033af", "sample": "S58", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.S58_R2.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R2_001.fastq.gz 5158381706 FASTQ S58_R2 unaligned CPTAC3 22dae48f-7718-4bf3-93ad-607e94aa2e4d f551918aa0634f528968b0559d279da6 {"aliquot_tag": "ALQ_273033af", "sample": "S58", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.transcriptome.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.transcriptome.gdc_realn.bam 9422437080 BAM transcriptome harmonized CPTAC3 0468d872-7864-400b-a755-c198977095fe 188ca5ca6a1fa9f60a5ba741eaf6a58e {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor"} -C3L-01599.RNA-Seq.transcriptome.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.transcriptome.gdc_realn.bam 4512065970 BAM transcriptome harmonized CPTAC3 1036b394-d65f-4f93-bb2c-09d8642d0846 60e1531db0c6289cba1126a34d28832a {"aliquot_tag": "ALQ_273033af", "gdc_sample_type": "Primary Tumor"} -C3L-01599.WGS.N C3L-01599 UCEC WGS blood_normal CPT0087490002 CPT0087490002.WholeGenome.RP-1303.bam 64880951881 BAM aligned CPTAC3 2e88df73-279b-4d95-b0c8-00f6976cac60 c45467e6d0bd3d3ffbd258da795a720d {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01599.WGS.N.hg38 C3L-01599 UCEC WGS blood_normal CPT0087490002 340897a3-7324-4f04-a62c-b558e04fe62f_gdc_realn.bam 98063789736 BAM harmonized CPTAC3 4f2b06b9-64f0-4dfd-8ca7-e999e3e29975 9fc79af32666fcd7f7d2863a1ca12d00 {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01599.WGS.T C3L-01599 UCEC WGS tumor CPT0087260009 CPT0087260009.WholeGenome.RP-1303.bam 77658358712 BAM aligned CPTAC3 8dc08441-35f4-4635-a111-3860af695f52 7548ba8a4177d90a57117f70f9b9c188 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor"} -C3L-01599.WGS.T.hg38 C3L-01599 UCEC WGS tumor CPT0087260009 839e2341-52aa-4d86-8ea6-1a99976252cd_gdc_realn.bam 118541187758 BAM harmonized CPTAC3 18761edb-f5c8-4078-8d9e-29cb128c81f3 dde49aafdf2479c40071d49b29daef61 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor"} -C3L-01599.WXS.N C3L-01599 UCEC WXS blood_normal CPT0087490002 CPT0087490002.WholeExome.RP-1303.bam 33392050676 BAM aligned CPTAC3 07071966-270e-4f9c-8ca9-d172e6c0862b 2379654ebe37088d6070923a317f06b4 {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01599.WXS.N.hg38 C3L-01599 UCEC WXS blood_normal CPT0087490002 340897a3-7324-4f04-a62c-b558e04fe62f_gdc_realn.bam 46041078356 BAM harmonized CPTAC3 fc190a8b-9024-4876-ad9f-5b4d4482bc31 069492ff1c65df1ed213495bb2218a6f {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal"} -C3L-01599.WXS.T C3L-01599 UCEC WXS tumor CPT0087260009 CPT0087260009.WholeExome.RP-1303.bam 30324942739 BAM aligned CPTAC3 d50d87a2-f56a-4946-b31e-4a67b38807ba 4f0da3071bba65e004d41153201a39b1 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor"} -C3L-01599.WXS.T.hg38 C3L-01599 UCEC WXS tumor CPT0087260009 839e2341-52aa-4d86-8ea6-1a99976252cd_gdc_realn.bam 41722120312 BAM harmonized CPTAC3 9c4957ae-3d94-4e31-8faa-961265d3781c d9ea0ea12a8d9768f2c0df7930eced2a {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor"} -C3L-01601.MethArray.Green.T C3L-01601 SAR Methylation_Array tumor CPT0087120009 202234360028_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 76261262-fb6f-4700-9f7c-64e92acb2e15 93f4f869def9164b7e582a6820a6bad1 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor"} -C3L-01601.MethArray.Red.T C3L-01601 SAR Methylation_Array tumor CPT0087120009 202234360028_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 0533c299-4ca6-495b-8a63-fcb49c1a1a28 7bfe175cd585580629cfad59465e00c9 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor"} -C3L-01601.miRNA-Seq.A.hg38 C3L-01601 SAR miRNA-Seq tissue_normal CPT0087130009 b57c0c5a-0c59-4cd2-9004-9d63bd81e9a1_mirnaseq_gdc_realn.bam 207409118 BAM harmonized CPTAC3 cfd48c02-6c15-4249-82a4-bf0ab7629173 7ab6ded46df155d9c42274ae6da333f1 {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.miRNA-Seq.S21_L005_R1.A C3L-01601 SAR miRNA-Seq tissue_normal CPT0087130009 181113_UNC31-K00269_0164_AH23NNBBXY_TCATTC_S21_L005_R1_001.unaln.bam 185600074 BAM S21_L005_R1 unaligned CPTAC3 ef54f3bd-9e86-4583-85b9-7e5e775607f9 c4b01a94ac7cad7972c2e0fc9cb2f6f2 {"aliquot_tag": "ALQ_fba56b27", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.miRNA-Seq.S37_L008_R1.T C3L-01601 SAR miRNA-Seq tumor CPT0087120006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATGTCA_S37_L008_R1_001.unaln.bam 258542822 BAM S37_L008_R1 unaligned CPTAC3 801b0079-b8ff-4855-874c-f030d22b16c4 b930cc024f700bdc72a25affa0d6b56a {"aliquot_tag": "ALQ_567a5f06", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01601.miRNA-Seq.T.hg38 C3L-01601 SAR miRNA-Seq tumor CPT0087120006 9985e417-d960-446a-b62f-5aeccc6d9498_mirnaseq_gdc_realn.bam 281238757 BAM harmonized CPTAC3 fdc1963b-9410-4239-886e-c612b55305cb 4946bf68631c95fb5fea7ad6d63d16bb {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor"} -C3L-01601.RNA-Seq.chimeric.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.chimeric.gdc_realn.bam 31309899 BAM chimeric harmonized CPTAC3 fa5ec2ad-5767-484c-8992-19902bb790f7 8c2c5b0d8ae3740e53bada6f343bb761 {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.RNA-Seq.chimeric.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.chimeric.gdc_realn.bam 36455540 BAM chimeric harmonized CPTAC3 9fe2a27b-fc47-4081-849e-d86fdae09e1d b1634046d670fce8421638180b0c8335 {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor"} -C3L-01601.RNA-Seq.genomic.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.genomic.gdc_realn.bam 9287870555 BAM genomic harmonized CPTAC3 99e26486-825b-4120-b028-3ea2e35ad155 cab9ae140a27078088b7358f63df8d5d {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.RNA-Seq.genomic.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.genomic.gdc_realn.bam 7342315684 BAM genomic harmonized CPTAC3 458f9cef-37d0-4659-84ad-dc68f77061eb 9ee8628581e0462a432158de6f00011e {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor"} -C3L-01601.RNA-Seq.S14_L004_R1.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R1_001.fastq.gz 3867660485 FASTQ S14_L004_R1 unaligned CPTAC3 270ff7ed-03d6-482f-819d-c1192ac3dd79 62ba0c90a9c19fa0c6d8890c98f393b1 {"aliquot_tag": "ALQ_fba56b27", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.RNA-Seq.S14_L004_R2.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4348466857 FASTQ S14_L004_R2 unaligned CPTAC3 79b04c28-861b-49c8-96d0-3deccc138236 7c2b634e47291234f8431254adc5b2f1 {"aliquot_tag": "ALQ_fba56b27", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.RNA-Seq.S8_L002_R1.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R1_001.fastq.gz 3655471469 FASTQ S8_L002_R1 unaligned CPTAC3 74bd7423-bd88-4774-b5af-1969b53a8aa8 5c486172ade84e6975ff680338cc0181 {"aliquot_tag": "ALQ_567a5f06", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01601.RNA-Seq.S8_L002_R2.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R2_001.fastq.gz 4038026134 FASTQ S8_L002_R2 unaligned CPTAC3 7b9fccf0-a718-492b-8698-8a72a2c2a719 cee817b6927a12926e2612fbfa049790 {"aliquot_tag": "ALQ_567a5f06", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01601.RNA-Seq.transcriptome.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.transcriptome.gdc_realn.bam 10047655932 BAM transcriptome harmonized CPTAC3 528f5269-049c-4961-a57d-bb950e877dc1 f627d34749d4fab3e55201e32b72a122 {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.RNA-Seq.transcriptome.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.transcriptome.gdc_realn.bam 9223491278 BAM transcriptome harmonized CPTAC3 010643ad-1652-49b8-98ec-3d034274423b d67dd6bf1d760b4da49044002e46522e {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor"} -C3L-01601.WGS.A C3L-01601 SAR WGS tissue_normal CPT0087130006 CPT0087130006.WholeGenome.RP-1303.bam 64370288294 BAM aligned CPTAC3 31f40d4f-2521-436e-a794-6f96f61b37b6 8111331e637c564e39b1b9669f9b85f6 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.WGS.A.hg38 C3L-01601 SAR WGS tissue_normal CPT0087130006 78f95fc8-6b51-4a22-936d-ed0ac5991af7_wgs_gdc_realn.bam 92673874222 BAM harmonized CPTAC3 11256f24-6f95-4715-80a0-ca88eddffeab d018c287df38c57ed1e1a3118b2bee95 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.WGS.N C3L-01601 SAR WGS blood_normal CPT0087470002 CPT0087470002.WholeGenome.RP-1303.bam 56631961543 BAM aligned CPTAC3 0c7ed95e-c127-4a49-bee7-0202bdc1213a 579a1764fd125537bbb8dc93781f10cb {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01601.WGS.N.hg38 C3L-01601 SAR WGS blood_normal CPT0087470002 4c1f1c41-8b18-463f-acfe-c56b9ce4892d_wgs_gdc_realn.bam 81162540030 BAM harmonized CPTAC3 f17aa749-8f0d-4a1e-90f8-2f0d84fe0855 9c082692792ec0eb35b1bd118d479712 {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01601.WGS.T C3L-01601 SAR WGS tumor CPT0087120009 CPT0087120009.WholeGenome.RP-1303.bam 64336308899 BAM aligned CPTAC3 f1fd1db6-e551-4dac-9d45-0a2de70928fe e579e871f07fcdc8cf689a9eba2805cb {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor"} -C3L-01601.WGS.T.hg38 C3L-01601 SAR WGS tumor CPT0087120009 08f3ad26-1794-4e19-afbf-a29ac219dd65_wgs_gdc_realn.bam 93772592784 BAM harmonized CPTAC3 c2a69d6b-b0c9-43ed-a333-fb2cae7a1980 efc3de1141d5e5155f1c9b2f63393d68 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor"} -C3L-01601.WXS.A C3L-01601 SAR WXS tissue_normal CPT0087130006 CPT0087130006.WholeExome.RP-1303.bam 28511767852 BAM aligned CPTAC3 24741d34-5f7c-4e95-b4da-d6667e17b774 cefae5d5cdbc7ee1a330d98b5a9ed988 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.WXS.A.hg38 C3L-01601 SAR WXS tissue_normal CPT0087130006 78f95fc8-6b51-4a22-936d-ed0ac5991af7_wxs_gdc_realn.bam 38656662117 BAM harmonized CPTAC3 e35a03ad-99ea-483a-9d5e-32d53fea0e8b 7245f0e89fab96d91e94f9d2a66730e3 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01601.WXS.N C3L-01601 SAR WXS blood_normal CPT0087470002 CPT0087470002.WholeExome.RP-1303.bam 33535947551 BAM aligned CPTAC3 8d537c6a-e9b0-4a16-a80d-c56a2f7f2af3 f4da5ce7aa10eae4c5d70960bb6734ce {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01601.WXS.N.hg38 C3L-01601 SAR WXS blood_normal CPT0087470002 4c1f1c41-8b18-463f-acfe-c56b9ce4892d_wxs_gdc_realn.bam 45336795504 BAM harmonized CPTAC3 16fd2f3b-4299-4029-81b0-c9f0dda771b9 1f347606cb27e78e40b5583de82bf0db {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal"} -C3L-01601.WXS.T C3L-01601 SAR WXS tumor CPT0087120009 CPT0087120009.WholeExome.RP-1303.bam 38989719880 BAM aligned CPTAC3 656f74bc-11ec-49c9-9ea1-fdad3858cb3e 9e243448eafa28ffb316a3177d787cf0 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor"} -C3L-01601.WXS.T.hg38 C3L-01601 SAR WXS tumor CPT0087120009 08f3ad26-1794-4e19-afbf-a29ac219dd65_wxs_gdc_realn.bam 52315019689 BAM harmonized CPTAC3 838016fb-cc31-41b9-9e75-b89ba3ac6ea0 8e6b816170fc638730fc31b90e2196b6 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_30f9b882.MethArray.Green.T C3L-01603 CCRCC Methylation_Array tumor CPT0087030009 204372030139_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d5c255a4-c167-4b53-aec3-57d5847b3a42 d390266d7c78e689fdcd93d935ff134a {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_30f9b882.MethArray.Red.T C3L-01603 CCRCC Methylation_Array tumor CPT0087030009 204372030139_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 dc5276c9-1105-4c26-9645-666f288a0f06 d623322ce5dff565661c72eb4fc54b70 {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_30f9b882.WGS.T C3L-01603 CCRCC WGS tumor CPT0087030009 CPT0087030009.WholeGenome.RP-2158.bam 28365915469 BAM aligned CPTAC3 90ec5ffe-98b7-491f-bc3c-48275e6af3a5 86ea49ac9ab4723d7879b7b952f6337f {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_30f9b882.WGS.T.hg38 C3L-01603 CCRCC WGS tumor CPT0087030009 aaedabcc-7240-4ff3-91ed-4a68ff39c3c9_wgs_gdc_realn.bam 81926898476 BAM harmonized CPTAC3 574e9d8a-9f96-4111-84f9-b20009293f10 acdcf1c55ea82cede91ed6cd48a1e9f6 {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_30f9b882.WXS.T C3L-01603 CCRCC WXS tumor CPT0087030009 CPT0087030009.WholeExome.RP-1303.bam 25134536872 BAM aligned CPTAC3 06a293d4-4b40-43c7-8c8a-e1a7e8b4cb21 54c85c7b3bd9d49169145cee8e33e38b {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_30f9b882.WXS.T.hg38 C3L-01603 CCRCC WXS tumor CPT0087030009 aaedabcc-7240-4ff3-91ed-4a68ff39c3c9_wxs_gdc_realn.bam 35629788580 BAM harmonized CPTAC3 fd3812ba-d8e3-4fd2-a53c-6b51847f315e a44c39a3fdc26dc0c58a240b9c31886f {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_9d268ca3.miRNA-Seq.S16_L003_R1.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087020006 200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L003_R1_001.unaln.bam 384606700 BAM S16_L003_R1 unaligned CPTAC3 2b19c8c6-da19-4267-a82c-a2d1e5662c47 59489140551a5b400a599c83c9899a0b {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_9d268ca3.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087020006 0bcb4164-b4f9-44a5-b3bf-1fd03c033263_mirnaseq_gdc_realn.bam 427498345 BAM harmonized CPTAC3 95c24783-f0ce-462c-b0a8-789b74b60781 3469a82562a3fac48b8a9d8a8de1f338 {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_9d268ca3.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.chimeric.gdc_realn.bam 364215582 BAM chimeric harmonized CPTAC3 ee0f5d21-bc3c-4b68-a40d-47aa32943716 be6d6d805d88f60cca964c90117468fb {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_9d268ca3.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.genomic.gdc_realn.bam 7987420674 BAM genomic harmonized CPTAC3 66d0cb3f-8b8b-4147-87c3-39eb66ebc2c0 641034ccda33d62e90d0c67c2a5ebebd {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_9d268ca3.RNA-Seq.S21_L006_R1.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R1_001.fastq.gz 3934128919 FASTQ S21_L006_R1 unaligned CPTAC3 cb95c513-52ca-4641-aa21-ee16ecb9bf76 f56386f3d8fb504aed1ac65158a68ee0 {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_9d268ca3.RNA-Seq.S21_L006_R2.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R2_001.fastq.gz 4490562842 FASTQ S21_L006_R2 unaligned CPTAC3 dbfcd61d-13bd-434f-88f8-39a69e5c0460 8b19beb1eb3bfe6833994642280f021f {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_9d268ca3.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.transcriptome.gdc_realn.bam 9324220490 BAM transcriptome harmonized CPTAC3 3fe76094-046d-4278-85c4-22b527cd9a81 78b03da328882256d22017833eedd577 {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_a046a513.miRNA-Seq.S17_L003_R1.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087030006 200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L003_R1_001.unaln.bam 342183985 BAM S17_L003_R1 unaligned CPTAC3 d2f2dee4-4830-4dea-adfd-0c59e72eebd5 e1f8edecafef59b24174e3b094cdd3e1 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_a046a513.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087030006 f7f7bcd1-cbd2-402d-8190-57ec78f8bd44_mirnaseq_gdc_realn.bam 378581708 BAM harmonized CPTAC3 2f260463-6f6d-44e7-80f2-7004f5cac59d ae1f8fc40bcf69417cb618bbedf93f66 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_a046a513.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.chimeric.gdc_realn.bam 299806412 BAM chimeric harmonized CPTAC3 77bc937a-7d22-4491-ad45-2492cb49fa0f 454d1e7d0e9fb534c61d68a2781b3953 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_a046a513.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.genomic.gdc_realn.bam 7989861670 BAM genomic harmonized CPTAC3 6348e12d-44c3-4b85-8566-fd49c4352462 e60115da860e299d65d65212d8977419 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_a046a513.RNA-Seq.S24_L006_R1.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R1_001.fastq.gz 3759773869 FASTQ S24_L006_R1 unaligned CPTAC3 8b099758-d7e9-4d93-8efb-f32ec126a22f 92d362c3dd39f1c97cef0f9fb74ce604 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_a046a513.RNA-Seq.S24_L006_R2.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R2_001.fastq.gz 4442281635 FASTQ S24_L006_R2 unaligned CPTAC3 0d1f8769-7831-4527-9fad-7baeb5269902 a208dde55f923b1fe68b33769cd92021 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_a046a513.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.transcriptome.gdc_realn.bam 9884765044 BAM transcriptome harmonized CPTAC3 6c86fbd9-0579-442c-bbb4-bd45dd1e586b d602860fb3c218f9adc9b56016dd9122 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_d999132.MethArray.Green.T C3L-01603 CCRCC Methylation_Array tumor CPT0087020009 204367470132_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 027f2f66-c51f-4876-9234-8c39721c605a f134a683d4f790e2e9494047664b89a1 {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_d999132.MethArray.Red.T C3L-01603 CCRCC Methylation_Array tumor CPT0087020009 204367470132_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 3c154978-4a64-4756-add3-4600afc99de0 a227e27fa39ae3ca8eb5399e1a660276 {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_d999132.WGS.T C3L-01603 CCRCC WGS tumor CPT0087020009 CPT0087020009.WholeGenome.RP-2158.bam 20633584429 BAM aligned CPTAC3 6cbef3a9-bcee-43e0-abe2-ff4a07deac53 50663d307a4de4f6c2767e93ba2085b9 {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_d999132.WGS.T.hg38 C3L-01603 CCRCC WGS tumor CPT0087020009 9be1846a-7ec6-4fa3-861e-5505d3402179_wgs_gdc_realn.bam 59066720417 BAM harmonized CPTAC3 2ec7bdd1-cad3-4f0c-939c-474457ac5aee f0e7247352e9b51083a7d2359c2384ea {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_d999132.WXS.T C3L-01603 CCRCC WXS tumor CPT0087020009 CPT0087020009.WholeExome.RP-1303.bam 21348531179 BAM aligned CPTAC3 e5e31d36-6c04-4fbf-b38c-f1faaa13f39b 3ec8036a10927808f381667f65055bae {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.DUP_d999132.WXS.T.hg38 C3L-01603 CCRCC WXS tumor CPT0087020009 9be1846a-7ec6-4fa3-861e-5505d3402179_wxs_gdc_realn.bam 29546693577 BAM harmonized CPTAC3 25660fe8-ec5f-4e50-9045-d142648e35e7 0d38e9623d8d732fecb5da8a4090309a {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01603.MethArray.Green.A C3L-01603 CCRCC Methylation_Array tissue_normal CPT0087050009 204930640108_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99446ba5-7827-4e5c-a46a-6a9a326da2dd b1ea65840db52a4e976aa70a768a9d3a {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.MethArray.Green.T C3L-01603 CCRCC Methylation_Array tumor CPT0087040009 202176290095_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 87caae1f-10fc-44a8-9331-584b73ab0f61 efd3e7e298f1928c6743c03ecdc2cfac {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor"} -C3L-01603.MethArray.Red.A C3L-01603 CCRCC Methylation_Array tissue_normal CPT0087050009 204930640108_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 279e831b-cf56-4e34-8e59-777cf1315a96 f9a897dd98d2a23d9527572577b4c6dc {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.MethArray.Red.T C3L-01603 CCRCC Methylation_Array tumor CPT0087040009 202176290095_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6e142cb4-4c18-4900-ae6d-e05c1a5403db 6c737dfd5913fa7e3657b4f5b94d2d71 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor"} -C3L-01603.miRNA-Seq.A.hg38 C3L-01603 CCRCC miRNA-Seq tissue_normal CPT0087050006 fcd433c7-1b54-4b52-b566-50a0983a1810_mirnaseq_gdc_realn.bam 188004296 BAM harmonized CPTAC3 276d592b-8cd8-46f6-8405-5628d7621c30 392d3de278fce660fa5a09c8a030f0b5 {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.miRNA-Seq.S15_L008_R1.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087040006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L008_R1_001.unaln.bam 215307960 BAM S15_L008_R1 unaligned CPTAC3 c2952661-cc69-4792-870f-e15cef2ddfb4 4bada8e95e570997aa9d5096a9b13516 {"aliquot_tag": "ALQ_12667903", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01603.miRNA-Seq.S17_L005_R1.A C3L-01603 CCRCC miRNA-Seq tissue_normal CPT0087050006 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L005_R1_001.unaln.bam 163344795 BAM S17_L005_R1 unaligned CPTAC3 4a2a5ef9-7b5c-4386-8c59-078df6b4d8ae 400ee91f3ca3b40658fedbd06d6b3095 {"aliquot_tag": "ALQ_2f0650b3", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087040006 99d67dc7-cbc4-4b62-a36f-73ef4819de16_mirnaseq_gdc_realn.bam 237606656 BAM harmonized CPTAC3 2e5f44ac-d682-4d51-a436-4647f8a0a67f b9214798234cf374674f1edf2cef51e9 {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor"} -C3L-01603.RNA-Seq.chimeric.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.chimeric.gdc_realn.bam 90081201 BAM chimeric harmonized CPTAC3 8f41e2eb-892b-4c05-bdf2-59aa9ee24538 eaccd3fb9e764d5d2cbbf33b3cefbb5d {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.chimeric.gdc_realn.bam 33819771 BAM chimeric harmonized CPTAC3 dd0be843-5aa8-4a2b-902b-2cceeffdbc98 68ea749895fa8ab0478f8ebd25977858 {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor"} -C3L-01603.RNA-Seq.genomic.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.genomic.gdc_realn.bam 9736260643 BAM genomic harmonized CPTAC3 e6cbaffc-d26d-44a9-800e-5642fad52678 5ebaf3b36a9c48f2f8d4bc5522e4c645 {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.genomic.gdc_realn.bam 6788163686 BAM genomic harmonized CPTAC3 51b8cd08-4b69-4563-86c4-398312b917d6 546b3fd65949d50ded4373b5577c89ca {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor"} -C3L-01603.RNA-Seq.S15_L005_R1.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R1_001.fastq.gz 3431472766 FASTQ S15_L005_R1 unaligned CPTAC3 2fec763c-44ca-4f62-ac76-cf3f28d272c4 2a77623a01dd9519ecd8789144a45ce1 {"aliquot_tag": "ALQ_12667903", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01603.RNA-Seq.S15_L005_R2.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R2_001.fastq.gz 3674265253 FASTQ S15_L005_R2 unaligned CPTAC3 d09aa237-4266-4f20-b503-82f401998031 64ed16d58ca5fd37c3ffb016bc78e833 {"aliquot_tag": "ALQ_12667903", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01603.RNA-Seq.S7_L002_R1.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R1_001.fastq.gz 4805210218 FASTQ S7_L002_R1 unaligned CPTAC3 e138348f-c1aa-4865-a8bc-1784557a4f89 b78996c2974732454a71b01d0bbc3993 {"aliquot_tag": "ALQ_2f0650b3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.RNA-Seq.S7_L002_R2.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R2_001.fastq.gz 5008820276 FASTQ S7_L002_R2 unaligned CPTAC3 23bf8a0e-ebc4-4f6a-978f-a04a170d9979 d914b98c27bc4ffb723f619c6e34f5ee {"aliquot_tag": "ALQ_2f0650b3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.RNA-Seq.transcriptome.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.transcriptome.gdc_realn.bam 11969381174 BAM transcriptome harmonized CPTAC3 d2a7d806-0c48-4784-b8a9-1bee7db7ca9a a5529929ea6fb2525da14c0d14d231df {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.transcriptome.gdc_realn.bam 9765004309 BAM transcriptome harmonized CPTAC3 3299a8ff-578a-4d77-b479-83dc462a0ded bb5352e04e1a99cc026fdba81a3b3e97 {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor"} -C3L-01603.WGS.A C3L-01603 CCRCC WGS tissue_normal CPT0087050009 CPT0087050009.WholeGenome.RP-1303.bam 55672970227 BAM aligned CPTAC3 8e2132c0-346c-4a09-8519-6550d31b072e be9d4a19a5590a71cced5166f2b7a8ec {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.WGS.A.hg38 C3L-01603 CCRCC WGS tissue_normal CPT0087050009 92c6bca3-e903-4b6a-b994-b4711ebbf5ba_wgs_gdc_realn.bam 81779110488 BAM harmonized CPTAC3 937cbe61-83ec-4f78-9e9c-d93772b6ce40 19df8d8aa63b8f9c0e3d2d14bf0be4af {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.WGS.N C3L-01603 CCRCC WGS blood_normal CPT0087460001 CPT0087460001.WholeGenome.RP-1303.bam 61997537192 BAM aligned CPTAC3 0e14e638-9360-48b6-a696-f3cf51de4667 f348d17952e4c9c79d57a6f9dc147371 {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-01603.WGS.N.hg38 C3L-01603 CCRCC WGS blood_normal CPT0087460001 0bf76841-56c0-4d7b-9ac8-404463eebb19_gdc_realn.bam 93459821358 BAM harmonized CPTAC3 a7d95b1a-7ca4-4ebf-8439-976b8f1e2191 896d1373a17d001189538da11c7bbe9d {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-01603.WGS.T C3L-01603 CCRCC WGS tumor CPT0087040009 CPT0087040009.WholeGenome.RP-1303.bam 66225313479 BAM aligned CPTAC3 0983c22e-89ef-4790-a0bd-4a14fa4ec2c1 b469854ed51185857c74a50c7eaa0600 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor"} -C3L-01603.WGS.T.hg38 C3L-01603 CCRCC WGS tumor CPT0087040009 68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 99249775539 BAM harmonized CPTAC3 0f347105-b500-4cdd-8a0e-d931f4a6b999 df7698c8bc12a7d2486e4a464ee22f54 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor"} -C3L-01603.WXS.A C3L-01603 CCRCC WXS tissue_normal CPT0087050009 CPT0087050009.WholeExome.RP-1303.bam 26634202131 BAM aligned CPTAC3 41ca9931-a7fc-4dd1-b1bc-3c5fd9d7ac2a cbfc4c8ca0fa7890d997abe8c70036f4 {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.WXS.A.hg38 C3L-01603 CCRCC WXS tissue_normal CPT0087050009 92c6bca3-e903-4b6a-b994-b4711ebbf5ba_wxs_gdc_realn.bam 36443694772 BAM harmonized CPTAC3 78d90952-0702-4498-babd-304a8883bc65 9f6a2d5431c541b6f661ed6527490c89 {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01603.WXS.N C3L-01603 CCRCC WXS blood_normal CPT0087460001 CPT0087460001.WholeExome.RP-1303.bam 33839393409 BAM aligned CPTAC3 7aba65f0-d3c6-4f7b-8a1f-74aa7c88a6ea 89fec373e24c2670fe747f6c743a0353 {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-01603.WXS.N.hg38 C3L-01603 CCRCC WXS blood_normal CPT0087460001 0bf76841-56c0-4d7b-9ac8-404463eebb19_gdc_realn.bam 47249064201 BAM harmonized CPTAC3 dc692a2f-c698-4e56-a99c-4de2ab303ec1 21934223cbd08bf8d042803c2db8e7ab {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal"} -C3L-01603.WXS.T C3L-01603 CCRCC WXS tumor CPT0087040009 CPT0087040009.WholeExome.RP-1303.bam 47255286396 BAM aligned CPTAC3 4d240691-aab4-46d5-bb2f-77628dea885b 5db289b37fdcb98517e8e6c6fc688a59 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor"} -C3L-01603.WXS.T.hg38 C3L-01603 CCRCC WXS tumor CPT0087040009 68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 65921297500 BAM harmonized CPTAC3 9cf6e0c1-e777-4ca3-b956-07947dce8216 1e88d381a9c082b9cab126fd0f16f276 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor"} -C3L-01606.MethArray.Green.A C3L-01606 LSCC Methylation_Array tissue_normal CPT0086270006 203219650004_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 532023b2-776a-4ec7-817f-cf2da8e4b73d 2ec37c99153e1ff0d3c3fd759865d9df {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.MethArray.Green.T C3L-01606 LSCC Methylation_Array tumor CPT0086260009 202234380064_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7dd8d9c3-640e-4222-844f-887078a86084 ecee926d810ef9fd00e08d77ff388dbf {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor"} -C3L-01606.MethArray.Red.A C3L-01606 LSCC Methylation_Array tissue_normal CPT0086270006 203219650004_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 fd2a3cc2-4213-4313-b576-cc14025e48b1 6fb36fb494ebb775493bdafec6058678 {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.MethArray.Red.T C3L-01606 LSCC Methylation_Array tumor CPT0086260009 202234380064_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 842f72fd-fdb1-4c0e-94e2-fe8fc4197b62 83b88f8dd2669bb079669f22f4ec221d {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor"} -C3L-01606.miRNA-Seq.A.hg38 C3L-01606 LSCC miRNA-Seq tissue_normal CPT0086270009 af87779b-f1be-4969-be76-8c39a570fb75_mirnaseq_gdc_realn.bam 287805965 BAM harmonized CPTAC3 d2c5a0ca-2f58-427f-9c70-4dc27dc54cdc 280d2ce7215b89dfad42ba8a55db9094 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.miRNA-Seq.S35_L008_R1.T C3L-01606 LSCC miRNA-Seq tumor CPT0086260006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTTGTA_S35_L008_R1_001.unaln.bam 237276803 BAM S35_L008_R1 unaligned CPTAC3 2eaa4d32-0807-4b41-a0c1-da6a63f5e21e 6d850eeff40f8a3f7051965b952c2e31 {"aliquot_tag": "ALQ_831980dc", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01606.miRNA-Seq.S43_L006_R1.A C3L-01606 LSCC miRNA-Seq tissue_normal CPT0086270009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGAAA_S43_L006_R1_001.unaln.bam 256671741 BAM S43_L006_R1 unaligned CPTAC3 d4416694-7a82-413e-916d-6a8ef57254b9 d63a1f68145049ec51105f04be823fb9 {"aliquot_tag": "ALQ_2ec6b4fd", "sample": "S43", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.miRNA-Seq.T.hg38 C3L-01606 LSCC miRNA-Seq tumor CPT0086260006 f966dbf7-37a2-4484-ad14-d3af77efa634_mirnaseq_gdc_realn.bam 253899386 BAM harmonized CPTAC3 16174d89-5ba0-44e7-b183-550c2a23f894 79fc73c3db914fbc5ed47c88b75a3e94 {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor"} -C3L-01606.RNA-Seq.chimeric.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.chimeric.gdc_realn.bam 68104428 BAM chimeric harmonized CPTAC3 431751d3-009c-4e46-b77f-603184b4e08b c8a80206945be970442ee7ffeba63608 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.RNA-Seq.chimeric.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.chimeric.gdc_realn.bam 49434752 BAM chimeric harmonized CPTAC3 140454bd-9b93-473f-8dee-5009aea3778e 0f7089906935e901f2958a484f41a544 {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor"} -C3L-01606.RNA-Seq.genomic.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.genomic.gdc_realn.bam 13213850824 BAM genomic harmonized CPTAC3 3acae410-e9ea-43dd-94fa-99be8461fe43 8296ad0e45f867c87b5bf8fcad32bc57 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.RNA-Seq.genomic.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.genomic.gdc_realn.bam 7864484823 BAM genomic harmonized CPTAC3 e9dfed0c-8b6a-48ef-bfd5-31633e3eaf32 f0dcd0df7f5d454e2300ae0366cf29cf {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor"} -C3L-01606.RNA-Seq.S10_L003_R1.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 5799637191 FASTQ S10_L003_R1 unaligned CPTAC3 1931113f-9002-4201-ad55-f44a17b154c9 49ee978274a24c04fb493077ec3e45b8 {"aliquot_tag": "ALQ_2ec6b4fd", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.RNA-Seq.S10_L003_R2.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 6356112632 FASTQ S10_L003_R2 unaligned CPTAC3 9b575cdb-efc4-4b96-8ff9-7554429c7731 15a060e8801c4146d85868b514cbba54 {"aliquot_tag": "ALQ_2ec6b4fd", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.RNA-Seq.S12_L003_R1.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3687206451 FASTQ S12_L003_R1 unaligned CPTAC3 528c9b3b-16a5-43b4-b247-d51421959853 2766cdc423074162385abefccb1796e9 {"aliquot_tag": "ALQ_831980dc", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01606.RNA-Seq.S12_L003_R2.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 4081591925 FASTQ S12_L003_R2 unaligned CPTAC3 e741edb3-6ff0-457f-9cbe-4de09b7919f7 0e3c8008716009ea58bb0278c58c9575 {"aliquot_tag": "ALQ_831980dc", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01606.RNA-Seq.transcriptome.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.transcriptome.gdc_realn.bam 15342947586 BAM transcriptome harmonized CPTAC3 6ac96a4e-fdae-4280-891d-2448ec5a2e01 56288463329be6e79bf5cdf52ece9d94 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.RNA-Seq.transcriptome.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.transcriptome.gdc_realn.bam 9073473362 BAM transcriptome harmonized CPTAC3 214cefdd-5fd7-4ec2-ba6a-00dbf3f9b9b4 defe0346e67def904253f2920dc04ff7 {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor"} -C3L-01606.WGS.A C3L-01606 LSCC WGS tissue_normal CPT0086270006 CPT0086270006.WholeGenome.RP-1303.bam 53290753540 BAM aligned CPTAC3 27312ecd-da82-4fc6-8d47-f7b99851071c 7109f25120b550e320fdd1c84fcc47cf {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.WGS.A.hg38 C3L-01606 LSCC WGS tissue_normal CPT0086270006 1a00f5ef-418f-466c-a02c-3fd5f9af96ac_wgs_gdc_realn.bam 77494669498 BAM harmonized CPTAC3 e0d9c5d2-44de-42f7-b2b0-69ac2f7d7b64 75412ef999cff4abedfeaae47ce5080c {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.WGS.N C3L-01606 LSCC WGS blood_normal CPT0087360002 CPT0087360002.WholeGenome.RP-1303.bam 64729368137 BAM aligned CPTAC3 311bb059-814e-4785-8719-63895e8a02a2 44d2f7af87962ca293576519b4da6766 {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01606.WGS.N.hg38 C3L-01606 LSCC WGS blood_normal CPT0087360002 14f61799-01e6-4bc3-8da4-8d52b448bdaf_wgs_gdc_realn.bam 94768225643 BAM harmonized CPTAC3 44226526-d229-4949-9534-14dc2e600f7d 0aab006010a60a60bce78aa8d7e96018 {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01606.WGS.T C3L-01606 LSCC WGS tumor CPT0086260009 CPT0086260009.WholeGenome.RP-1303.bam 66557006353 BAM aligned CPTAC3 85e46f96-962e-47dd-a638-e43ce35e9b74 bf735d4e28d495a226cded13801ccecb {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor"} -C3L-01606.WGS.T.hg38 C3L-01606 LSCC WGS tumor CPT0086260009 ae2ea600-3419-45eb-a7cc-e397a4f13e2e_wgs_gdc_realn.bam 96237422798 BAM harmonized CPTAC3 1549df6f-6d6c-472b-b597-a5b04336b9d1 ecda8e7ae7c8b9c9ecff7679daac3d5f {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor"} -C3L-01606.WXS.A C3L-01606 LSCC WXS tissue_normal CPT0086270006 CPT0086270006.WholeExome.RP-1303.bam 30700626776 BAM aligned CPTAC3 b2baea8e-53da-4d3b-ad0b-6a00069eb853 bf9e5131f3b14342186f22240ffbf587 {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.WXS.A.hg38 C3L-01606 LSCC WXS tissue_normal CPT0086270006 1a00f5ef-418f-466c-a02c-3fd5f9af96ac_wxs_gdc_realn.bam 40925187576 BAM harmonized CPTAC3 9c5754ff-1b55-40e6-bacc-5fabb58aa7c5 a7978d77cb67ba026df017c0554f1435 {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01606.WXS.N C3L-01606 LSCC WXS blood_normal CPT0087360002 CPT0087360002.WholeExome.RP-1303.bam 30049030554 BAM aligned CPTAC3 d30c8360-0ac2-4195-b643-b6b8066a9f93 5d1a86f707e09e01dcb2104deff4924e {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01606.WXS.N.hg38 C3L-01606 LSCC WXS blood_normal CPT0087360002 14f61799-01e6-4bc3-8da4-8d52b448bdaf_wxs_gdc_realn.bam 40451984185 BAM harmonized CPTAC3 ba67c547-f229-44c3-b97d-8a8caea30e47 37816d2783380e7a9c57a5970b3ebbe9 {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01606.WXS.T C3L-01606 LSCC WXS tumor CPT0086260009 CPT0086260009.WholeExome.RP-1303.bam 31391267209 BAM aligned CPTAC3 13b8c9b1-6cf8-4915-ae94-3fce0f3c09e7 df5513a4bedaeb43e9586b5b053d0dd7 {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor"} -C3L-01606.WXS.T.hg38 C3L-01606 LSCC WXS tumor CPT0086260009 ae2ea600-3419-45eb-a7cc-e397a4f13e2e_wxs_gdc_realn.bam 42392754674 BAM harmonized CPTAC3 6cef75a3-5204-4914-948c-673047273d59 7148ae4f25752282e10de9de3ee863af {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor"} -C3L-01607.ANN_add7cb6e.MethArray.Green.T C3L-01607 CCRCC Methylation_Array tumor CPT0092160009 202234380069_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f2629a18-c437-4c62-9f0f-f1c0ddd24ca1 2b2ee282b495ac554a2c50c37af09232 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-01607.ANN_add7cb6e.MethArray.Red.T C3L-01607 CCRCC Methylation_Array tumor CPT0092160009 202234380069_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 35c3fd9f-2b85-478a-b539-0d15519c3b73 ec40e145910d41e33776dd948277cb41 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-01607.ANN_add7cb6e.WGS.T C3L-01607 CCRCC WGS tumor CPT0092160009 CPT0092160009.WholeGenome.RP-1303.bam 58074331772 BAM aligned CPTAC3 c3a0dc8e-2b96-4e3d-949a-26248bb322ca 53e933a5073647ae08e3b6553a7c13d3 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-01607.ANN_add7cb6e.WGS.T.hg38 C3L-01607 CCRCC WGS tumor CPT0092160009 0787b6cc-fab1-4c71-8db6-10d6093ce29d_wgs_gdc_realn.bam 85641289703 BAM harmonized CPTAC3 baf65777-56c8-40be-a13d-b74c6fa34388 554b3e997f19a57a5b8e0b4b97b30284 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-01607.ANN_add7cb6e.WXS.T C3L-01607 CCRCC WXS tumor CPT0092160009 CPT0092160009.WholeExome.RP-1303.bam 33833188091 BAM aligned CPTAC3 16b4ad52-019f-45b8-af82-cf884e1421dd 7e3d9e7d1f5f981f227baecbfe7325a9 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-01607.ANN_add7cb6e.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092160009 0787b6cc-fab1-4c71-8db6-10d6093ce29d_wxs_gdc_realn.bam 46732242259 BAM harmonized CPTAC3 78055e79-e0e9-4a8d-989f-1c30f31745cd dc9b4d279ba71377e1bbd9d4812b6ead {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_12e7750f.MethArray.Green.T C3L-01607 CCRCC Methylation_Array tumor CPT0092180009 204367470131_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 80a96047-b286-4d7e-aebb-66788fe9b08b 3fd94b17cb3d0ef7d7c4b7c2ce5d8bda {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_12e7750f.MethArray.Red.T C3L-01607 CCRCC Methylation_Array tumor CPT0092180009 204367470131_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 b821d0f1-413f-45ce-a27d-da8c0a283ca2 813fb5718554e37fb02ffda4a1d13233 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_12e7750f.WGS.T C3L-01607 CCRCC WGS tumor CPT0092180009 CPT0092180009.WholeGenome.RP-2158.bam 28531084531 BAM aligned CPTAC3 8eae0546-2d83-40c9-897c-fdcec1250fb1 c40cbc85b3dd9e66353d7368f52c04bd {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_12e7750f.WGS.T.hg38 C3L-01607 CCRCC WGS tumor CPT0092180009 9a22a752-6b30-46f1-82b8-65d20b385a02_wgs_gdc_realn.bam 83711726608 BAM harmonized CPTAC3 cb9be0a8-2f2f-42d0-9f2b-da90d9b56abc 7e4f188250e22fc450795d0df67b2291 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_12e7750f.WXS.T C3L-01607 CCRCC WXS tumor CPT0092180009 CPT0092180009.WholeExome.RP-1303.bam 24306445394 BAM aligned CPTAC3 830cee91-b9a4-4798-ab66-9997ea42afaa e87f0cee5c45640d2430c575a2084019 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_12e7750f.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092180009 9a22a752-6b30-46f1-82b8-65d20b385a02_wxs_gdc_realn.bam 33253902428 BAM harmonized CPTAC3 1b7bab7c-3042-407d-a4c5-7e9dc15add88 ff09e09f89631623a24391a602f1edb5 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_8ff4f.miRNA-Seq.S18_L003_R1.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092170006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCATTC_S18_L003_R1_001.unaln.bam 289966674 BAM S18_L003_R1 unaligned CPTAC3 3fd361a6-5a7d-45f9-bea2-45fdce426b5d d488f18e64dead8901de6383750cc1eb {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_8ff4f.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092170006 a8f0aa9e-bac0-4c1e-9cfe-561107c699ef_mirnaseq_gdc_realn.bam 322983752 BAM harmonized CPTAC3 45cdfd0b-c214-454c-a16e-71bb1cb1a411 97e1d3501d102a9e510b9a645d27a6a8 {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_8ff4f.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.chimeric.gdc_realn.bam 251117851 BAM chimeric harmonized CPTAC3 b3be073a-1dfc-457f-ba86-a6c943163f84 ebd40a764dfbd62d880e7cb17c4ccb7b {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_8ff4f.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.genomic.gdc_realn.bam 7339179496 BAM genomic harmonized CPTAC3 6fcffcdb-798f-45f6-962b-f019488244c8 9415506a3aae32c03194b0ccf3108d8c {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_8ff4f.RNA-Seq.S26_L007_R1.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R1_001.fastq.gz 3424823977 FASTQ S26_L007_R1 unaligned CPTAC3 d7b825fc-a5a5-415e-bd76-2356d4df3d64 41c50f86e6ebcf768515e24c08a75a60 {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_8ff4f.RNA-Seq.S26_L007_R2.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R2_001.fastq.gz 4061944604 FASTQ S26_L007_R2 unaligned CPTAC3 fc584b2b-cb19-41da-a8bd-fe57c972f412 1f5f4e75bdc1b2690a7aa502a8e687e3 {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_8ff4f.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.transcriptome.gdc_realn.bam 8818792404 BAM transcriptome harmonized CPTAC3 ef4bd076-568b-456d-a282-db0584dee055 9204fb04f9521750af2e54601c04665d {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_90b7e2de.MethArray.Green.T C3L-01607 CCRCC Methylation_Array tumor CPT0092170009 204372030071_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 6a552b5f-0ba7-4469-a729-981ce12973bc 17aae55469e47ecfe65d831d255b27d5 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_90b7e2de.MethArray.Red.T C3L-01607 CCRCC Methylation_Array tumor CPT0092170009 204372030071_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 4b5e8dc3-a4ee-4066-9c3a-06502aa123a2 a0ee2bb9b8830104f090aef70b5c1250 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_90b7e2de.WGS.T C3L-01607 CCRCC WGS tumor CPT0092170009 CPT0092170009.WholeGenome.RP-2158.bam 27883544958 BAM aligned CPTAC3 2b865606-d10c-46fd-af6a-a6cb6b4878c1 495173a5debc66679ebabd3220900cc1 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_90b7e2de.WGS.T.hg38 C3L-01607 CCRCC WGS tumor CPT0092170009 6374c0d5-ac85-4991-98c8-b1cc0c3160f2_wgs_gdc_realn.bam 80388252737 BAM harmonized CPTAC3 9b270c4c-4dca-4ca5-9775-3dc642e2a249 57196301cc0beb3bac0330bae2a578bf {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_90b7e2de.WXS.T C3L-01607 CCRCC WXS tumor CPT0092170009 CPT0092170009.WholeExome.RP-1303.bam 24010665875 BAM aligned CPTAC3 63adb4cd-ded6-405b-8aea-373f6f498595 3aae08ea7d8922f6782dc6dca5402118 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_90b7e2de.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092170009 6374c0d5-ac85-4991-98c8-b1cc0c3160f2_wxs_gdc_realn.bam 32449558479 BAM harmonized CPTAC3 27fecece-21f4-4ac6-a9ce-f528c514f6ac c7ddbe51b61be50082e1596bc99de3f5 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_eb29ad50.miRNA-Seq.S17_L001_R1.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092180013 200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L001_R1_001.unaln.bam 209689675 BAM S17_L001_R1 unaligned CPTAC3 9a4d4eab-a784-41bc-af14-9f222a157562 f30b3b172328e96bd7a2dd8e5bd3fdae {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_eb29ad50.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092180013 32a27a3c-e117-4113-a61c-700353fa31ee_mirnaseq_gdc_realn.bam 235840984 BAM harmonized CPTAC3 45f1077a-9184-48a9-b14b-4b8d5ea99a16 ee6832e71cbca027c91f8fcab6740e2e {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_eb29ad50.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.chimeric.gdc_realn.bam 56427916 BAM chimeric harmonized CPTAC3 4ceb66af-fb92-444a-a211-9c027df5adc9 0bf66247f8363211a7b70d4a98e77248 {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_eb29ad50.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.genomic.gdc_realn.bam 8938712235 BAM genomic harmonized CPTAC3 16b85f10-a4da-47d3-be5e-15baca5c1057 6f5651f3ee80c57701d49c5545ceac5a {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_eb29ad50.RNA-Seq.S4_L001_R1.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R1_001.fastq.gz 4209730181 FASTQ S4_L001_R1 unaligned CPTAC3 e028725b-d0c9-4181-8f50-fd1c079da914 4383ded30dc76421e5a4c844782c60bc {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_eb29ad50.RNA-Seq.S4_L001_R2.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R2_001.fastq.gz 5046398238 FASTQ S4_L001_R2 unaligned CPTAC3 5613d162-73a9-4540-9011-1d9ae35f221d f6e0ace8886ef6d64e8b4e08718f6066 {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01607.DUP_eb29ad50.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.transcriptome.gdc_realn.bam 12406412615 BAM transcriptome harmonized CPTAC3 6468f73f-e77e-40ec-a78c-73fd506e5732 457f0e8766028b158e35654370d42ce2 {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01607.MethArray.Green.A C3L-01607 CCRCC Methylation_Array tissue_normal CPT0092190013 204930630078_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 853bc0e7-3685-4de3-9b7a-cba250a37598 e835313cfed0886b486593a99352da7c {"aliquot_tag": "ALQ_d64984e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.MethArray.Red.A C3L-01607 CCRCC Methylation_Array tissue_normal CPT0092190013 204930630078_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 b8a339b9-6c5b-4db4-8a20-8552ba81718c 8ba8efc7d6b6c45cfbf49020303e3bd6 {"aliquot_tag": "ALQ_d64984e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.miRNA-Seq.A.hg38 C3L-01607 CCRCC miRNA-Seq tissue_normal CPT0092190006 64c8338f-f7fa-498c-83e0-a88a38ff2966_mirnaseq_gdc_realn.bam 219474974 BAM harmonized CPTAC3 c2f94ba3-1f47-4ae6-a4d2-d642b79c675c 1367c412424ce8ae73c8a936c82b824d {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.miRNA-Seq.S18_L005_R1.A C3L-01607 CCRCC miRNA-Seq tissue_normal CPT0092190006 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L005_R1_001.unaln.bam 193654998 BAM S18_L005_R1 unaligned CPTAC3 6c77cf2f-97e5-4465-91cb-c70d5b2e6dd6 25b8ea5f1d61c9ed7900df460ad1d997 {"aliquot_tag": "ALQ_bf38412e", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.miRNA-Seq.S7_L007_R1.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092160006 180724_UNC32-K00270_0106_BHWK3MBBXX_CACGAT_S7_L007_R1_001.unaln.bam 258690073 BAM S7_L007_R1 unaligned CPTAC3 2d5021e4-fbff-4675-9d3d-13b676f53324 636e5b0329300aa8c5b847335d200f75 {"aliquot_tag": "ALQ_3d68d6ff", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01607.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092160006 c856b4cb-1fe4-4390-9158-a520a64b47e8_mirnaseq_gdc_realn.bam 278056745 BAM harmonized CPTAC3 c207fcab-e82e-46cb-a603-ecb0798bee61 5094da17f3bbc4db5c3c5150864855f9 {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor"} -C3L-01607.RNA-Seq.chimeric.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.chimeric.gdc_realn.bam 74029524 BAM chimeric harmonized CPTAC3 8e1b3c27-b517-4472-98d2-03818b5da016 b14f0b1fb13b65202895b666162c4229 {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.chimeric.gdc_realn.bam 52200658 BAM chimeric harmonized CPTAC3 3313853c-bd8a-40fb-9490-9b7b52c642fc 81b5847310591108ae7423b6b1097ed6 {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor"} -C3L-01607.RNA-Seq.genomic.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.genomic.gdc_realn.bam 8936840514 BAM genomic harmonized CPTAC3 fd4a3d86-92f3-4842-9ee7-ed69ec93d0f2 d875092aa76563186a331285a4181f9c {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.genomic.gdc_realn.bam 9458200955 BAM genomic harmonized CPTAC3 1366de85-d946-4fc8-96ad-9b0dfbc7b3de fbcd9407a6b997678e0fe46cc96aa052 {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor"} -C3L-01607.RNA-Seq.S1_L006_R1.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R1_001.fastq.gz 4333613798 FASTQ S1_L006_R1 unaligned CPTAC3 0cca5899-0e8e-48ad-86dd-613e61876cc8 65720f28e278fac21ca213bfcca00a30 {"aliquot_tag": "ALQ_3d68d6ff", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01607.RNA-Seq.S1_L006_R2.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R2_001.fastq.gz 4832978770 FASTQ S1_L006_R2 unaligned CPTAC3 ce2ab1d4-c67d-4eed-9a1a-66e753edff5b b9fe0d53ed8adcf4d869080224e7f7fc {"aliquot_tag": "ALQ_3d68d6ff", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01607.RNA-Seq.S3_L001_R1.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R1_001.fastq.gz 4412072551 FASTQ S3_L001_R1 unaligned CPTAC3 6c109f03-8177-45d3-a4a2-f19074ee4ed6 ebab80ce522598c42e935cac7151baa6 {"aliquot_tag": "ALQ_bf38412e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.RNA-Seq.S3_L001_R2.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R2_001.fastq.gz 4324449781 FASTQ S3_L001_R2 unaligned CPTAC3 8c20a402-e741-42c8-9f58-d50da87cef25 1d6db40d0d4da9d28e097406d4000d1b {"aliquot_tag": "ALQ_bf38412e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.RNA-Seq.transcriptome.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.transcriptome.gdc_realn.bam 10707839341 BAM transcriptome harmonized CPTAC3 da0435a2-0d93-4a66-9d52-f9de2ca38133 78d2d467f8198804fbce8480de295279 {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.transcriptome.gdc_realn.bam 10636384156 BAM transcriptome harmonized CPTAC3 05eb2c95-329c-4d9b-a8ee-72d991eb000f f58ea6b915530f4d50b9d3097c680bec {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor"} -C3L-01607.WGS.A C3L-01607 CCRCC WGS tissue_normal CPT0092190009 CPT0092190009.WholeGenome.RP-1303.bam 67316449992 BAM aligned CPTAC3 f01f2bf7-452f-4cbe-bf9d-dff68e34d85b abaa019e8fca4f995cdedfa95d595cf9 {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.WGS.A.hg38 C3L-01607 CCRCC WGS tissue_normal CPT0092190009 db922bd9-8bd7-408d-b971-bdafbf4a08ce_wgs_gdc_realn.bam 99501129833 BAM harmonized CPTAC3 4c725d63-9de7-4561-b68b-9ad43f8d16a5 64a907828008321f56f4aaaf25654f91 {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.WGS.N C3L-01607 CCRCC WGS blood_normal CPT0093750002 CPT0093750002.WholeGenome.RP-1303.bam 67868807508 BAM aligned CPTAC3 3249ca0d-16ec-4691-8fe4-9d63c59df5d7 3443a22b50b837331766eb090d7b4aa1 {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01607.WGS.N.hg38 C3L-01607 CCRCC WGS blood_normal CPT0093750002 2986b7c9-3b40-46f8-a85a-4160c153fb79_wgs_gdc_realn.bam 99746668230 BAM harmonized CPTAC3 7192e800-b3ae-4f0b-9bf1-f5ecd0e6fa51 081e9d078029ca790a6aa8bba225b15f {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01607.WXS.A C3L-01607 CCRCC WXS tissue_normal CPT0092190009 CPT0092190009.WholeExome.RP-1303.bam 47923394079 BAM aligned CPTAC3 4350688c-c085-4797-aa45-e72166263108 71f4000a70d64e4560cb3a417c34bd42 {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.WXS.A.hg38 C3L-01607 CCRCC WXS tissue_normal CPT0092190009 db922bd9-8bd7-408d-b971-bdafbf4a08ce_wxs_gdc_realn.bam 64759989249 BAM harmonized CPTAC3 d58995c2-6ee3-4c19-992f-94c236ece00d f88af4842e364280c37edfdab893fa8f {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01607.WXS.N C3L-01607 CCRCC WXS blood_normal CPT0093750002 CPT0093750002.WholeExome.RP-1303.bam 33070394038 BAM aligned CPTAC3 ef20087f-66d0-4768-9c24-e6e6f40f8002 8073031393d1bcc08341053a81c82421 {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01607.WXS.N.hg38 C3L-01607 CCRCC WXS blood_normal CPT0093750002 2986b7c9-3b40-46f8-a85a-4160c153fb79_wxs_gdc_realn.bam 45394535909 BAM harmonized CPTAC3 e3ad46da-7db1-40bd-b135-ceeeb270d8e5 b9e879d99cbedcefaf44f4e427113364 {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01631.MethArray.Green.T C3L-01631 UCEC Methylation_Array tumor CPT0091720009 202234380051_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 810c3000-3a91-4e59-ab17-2a5b3abedc4a 8a5111726a8af5afadf751e3832d9f73 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor"} -C3L-01631.MethArray.Red.T C3L-01631 UCEC Methylation_Array tumor CPT0091720009 202234380051_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 6c51a1b7-3ff1-4fcd-8d34-91bf052be2db 705481c9b73bfa4b1059ec4ab294b9bb {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor"} -C3L-01631.miRNA-Seq.S1_L006_R1.T C3L-01631 UCEC miRNA-Seq tumor CPT0091720006 180828_UNC32-K00270_0112_AHWTLNBBXX_GATCAG_S1_L006_R1_001.unaln.bam 199721113 BAM S1_L006_R1 unaligned CPTAC3 9f1e509d-1e57-413f-8f8c-5615d31b0486 44f8cfd37888a3b019cca8ac0b48499c {"aliquot_tag": "ALQ_2f5989bf", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01631.miRNA-Seq.T.hg38 C3L-01631 UCEC miRNA-Seq tumor CPT0091720006 be1ed6c4-0a9f-48bb-aec7-ec8f38f73059_mirnaseq_gdc_realn.bam 220292982 BAM harmonized CPTAC3 0f9d05aa-c597-4f2b-b2d7-7e0275cf54b3 a95e2f0aa75c98c64f63a7364384a054 {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.chimeric.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.chimeric.gdc_realn.bam 126789377 BAM chimeric harmonized CPTAC3 b3d5d80b-4fa5-4413-b41b-4a8347423de0 927c6a7b292c0e344a3323ec34f4756f {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.chimeric.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.chimeric.gdc_realn.bam 64940527 BAM chimeric harmonized CPTAC3 d1962bc8-672c-44c6-9b57-62898d8a58c1 49cab8f3d231ea1ecff925a7f2797c27 {"aliquot_tag": "ALQ_a870c60f", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.genomic.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.genomic.gdc_realn.bam 9301532953 BAM genomic harmonized CPTAC3 e3664d14-0795-4f54-b9af-8767742dd695 4413be060442582fa6b510511c0e4f4e {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.genomic.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.genomic.gdc_realn.bam 5311578967 BAM genomic harmonized CPTAC3 7b72c326-1336-429a-a295-e14db153ff98 9616c6384bce12e27777da2f88544fd1 {"aliquot_tag": "ALQ_a870c60f", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.S47_R1.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R1_001.fastq.gz 3289724055 FASTQ S47_R1 unaligned CPTAC3 64a800c9-ba0d-455c-8252-c3adcfe79c20 1b5dca46e578b487d1ca25fc9c0ffc08 {"aliquot_tag": "ALQ_a870c60f", "sample": "S47", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.S47_R2.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R2_001.fastq.gz 3447026446 FASTQ S47_R2 unaligned CPTAC3 d3b7677d-3ed1-48d8-b582-b4f091ed5138 909caaef578847b982c8a496f9c059aa {"aliquot_tag": "ALQ_a870c60f", "sample": "S47", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.S5_L008_R1.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 4370972526 FASTQ S5_L008_R1 unaligned CPTAC3 0e012214-9883-4e4e-9d90-4ef8a046e5e8 a19bd3792ed583ebb024e21e47efefab {"aliquot_tag": "ALQ_2f5989bf", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.S5_L008_R2.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4766242841 FASTQ S5_L008_R2 unaligned CPTAC3 9c8feb8a-c27d-4ffd-bb1c-352547902da7 426559d644521491bb2f5c34ae903852 {"aliquot_tag": "ALQ_2f5989bf", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.transcriptome.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.transcriptome.gdc_realn.bam 11548739091 BAM transcriptome harmonized CPTAC3 916abc25-9de5-49a3-8d2e-a459a8279b58 e1a706dba16b09636401023cf71bf6b8 {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor"} -C3L-01631.RNA-Seq.transcriptome.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.transcriptome.gdc_realn.bam 3203964968 BAM transcriptome harmonized CPTAC3 3c92465a-6cfd-484a-9b03-a2ee95de3f39 e52a1b2a2e65d0c38086802fab4aeaed {"aliquot_tag": "ALQ_a870c60f", "gdc_sample_type": "Primary Tumor"} -C3L-01631.WGS.N C3L-01631 UCEC WGS blood_normal CPT0093650002 CPT0093650002.WholeGenome.RP-1303.bam 72888688170 BAM aligned CPTAC3 d461fece-090d-41ef-8a7b-06e67dca3b31 802d45a1b894df2b9652832ca69ea0b7 {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01631.WGS.N.hg38 C3L-01631 UCEC WGS blood_normal CPT0093650002 b79a44e8-8e7c-49bb-9f8e-b16971f96338_wgs_gdc_realn.bam 106827500798 BAM harmonized CPTAC3 1a1e12a8-8bc5-45f0-9367-8f7cc32e5d97 fc6e456451a4556483fe93c0adf79ae6 {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01631.WGS.T C3L-01631 UCEC WGS tumor CPT0091720009 CPT0091720009.WholeGenome.RP-1303.bam 65555996884 BAM aligned CPTAC3 0e4b564d-78c5-4765-9da3-97f050d4406d 8f83189be6a19baa42a1a48b88db9af0 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor"} -C3L-01631.WGS.T.hg38 C3L-01631 UCEC WGS tumor CPT0091720009 cfbdbdd3-6e47-49ae-93f0-da90cf5ceafb_wgs_gdc_realn.bam 94952692423 BAM harmonized CPTAC3 3eb9b2fc-035c-41e2-9dd3-3d443b073f1a 3ac7641754163e142fa58ba977d54cb0 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor"} -C3L-01631.WXS.N C3L-01631 UCEC WXS blood_normal CPT0093650002 CPT0093650002.WholeExome.RP-1303.bam 28878783826 BAM aligned CPTAC3 15788e85-ba65-49aa-9afa-b71f26d84e01 4c59e1611adddc4f09bcf4a68a0cedbd {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01631.WXS.N.hg38 C3L-01631 UCEC WXS blood_normal CPT0093650002 b79a44e8-8e7c-49bb-9f8e-b16971f96338_wxs_gdc_realn.bam 39922843919 BAM harmonized CPTAC3 fec156ec-e298-4158-9439-c2f5a3122b5b 502419525144e6aa81729a0f627ad702 {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01631.WXS.T C3L-01631 UCEC WXS tumor CPT0091720009 CPT0091720009.WholeExome.RP-1303.bam 37506165067 BAM aligned CPTAC3 be363008-e86e-4886-98c3-ae739dc3d0ee 61831169089ac9446dd63c360f0482fe {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor"} -C3L-01631.WXS.T.hg38 C3L-01631 UCEC WXS tumor CPT0091720009 cfbdbdd3-6e47-49ae-93f0-da90cf5ceafb_wxs_gdc_realn.bam 52366911499 BAM harmonized CPTAC3 fbcbeae5-7f42-4190-86d5-f040f8542b4c 487e5a83e579125ab1b3afdd9704bff8 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor"} -C3L-01632.MethArray.Green.A C3L-01632 LUAD Methylation_Array tissue_normal CPT0086770009 203027390091_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 786fa7b1-fe4f-4d3d-aec5-92324237c4a9 b3bb7e04129cf0391462dd5c1fa9e4e2 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.MethArray.Green.T C3L-01632 LUAD Methylation_Array tumor CPT0086750009 202234380064_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 535b99b7-5727-40e6-8082-a076f3fffbf6 327f8525b23f454b4230df00f8d3236e {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor"} -C3L-01632.MethArray.Red.A C3L-01632 LUAD Methylation_Array tissue_normal CPT0086770009 203027390091_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 d20fe21d-3f46-47b9-8cb1-c0f844e2e64f 8985589153bc8d133bd369c5e799ad52 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.MethArray.Red.T C3L-01632 LUAD Methylation_Array tumor CPT0086750009 202234380064_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 83812f03-3bcc-4f2f-bc15-726c4a73df5d 4e35475be2d2a32813490fe9851d9a13 {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor"} -C3L-01632.miRNA-Seq.A.hg38 C3L-01632 LUAD miRNA-Seq tissue_normal CPT0086770006 fd1884ab-888d-4545-bc62-888642b4ad29_mirnaseq_gdc_realn.bam 202115569 BAM harmonized CPTAC3 eefa88bb-35b6-4e91-9a1e-1f6ff26d883b c34258d1337a379ccea2b26f12504f03 {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.miRNA-Seq.S36_L008_R1.T C3L-01632 LUAD miRNA-Seq tumor CPT0086750006 180724_UNC32-K00270_0106_BHWK3MBBXX_AGTTCC_S36_L008_R1_001.unaln.bam 292897415 BAM S36_L008_R1 unaligned CPTAC3 380b5d79-0add-4c56-afb4-4a9a320b8ce6 9e7ed6177a6c04f4b05e48d17d5f12ea {"aliquot_tag": "ALQ_94746bbf", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01632.miRNA-Seq.S41_L002_R1.A C3L-01632 LUAD miRNA-Seq tissue_normal CPT0086770006 181108_UNC31-K00269_0163_BH23TVBBXY_GACGAC_S41_L002_R1_001.unaln.bam 179745000 BAM S41_L002_R1 unaligned CPTAC3 43cc03d3-13e6-461e-9c58-4b86f4e18355 1e710075162d678ef72dfb548fdedca4 {"aliquot_tag": "ALQ_eeb438df", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.miRNA-Seq.T.hg38 C3L-01632 LUAD miRNA-Seq tumor CPT0086750006 8ade91d7-15cb-48ce-96dd-383a44f40dc2_mirnaseq_gdc_realn.bam 314633998 BAM harmonized CPTAC3 afdd682e-2f68-4781-ab72-1a164ac4d98d 90de9b1b57affa06f4d621c97c85f704 {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor"} -C3L-01632.RNA-Seq.chimeric.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.chimeric.gdc_realn.bam 41984843 BAM chimeric harmonized CPTAC3 f23935db-d7b7-4431-9d6b-e0a2ed7d8f0b c166d9cc89b91902bf1ca45b2e846bcc {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.RNA-Seq.chimeric.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.chimeric.gdc_realn.bam 33690784 BAM chimeric harmonized CPTAC3 ce1b8d6c-9df8-4b47-888f-502d4ab69baa 2a6eef6963d4f688ac86bb7672e639f8 {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor"} -C3L-01632.RNA-Seq.genomic.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.genomic.gdc_realn.bam 7978630316 BAM genomic harmonized CPTAC3 4b2cb14d-cdfc-46d2-a477-a6529f5bb874 cb65911a8260c37589b3945fbf0518f6 {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.RNA-Seq.genomic.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.genomic.gdc_realn.bam 9378195136 BAM genomic harmonized CPTAC3 b7f76a51-ce8e-4c04-94b8-16b4a9a04f9f 515cb4670b3cac64fcc3cb6ba330c28b {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor"} -C3L-01632.RNA-Seq.S16_L005_R1.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R1_001.fastq.gz 3797039600 FASTQ S16_L005_R1 unaligned CPTAC3 239dc351-b231-4420-ad73-28f73918717c e4beff19033cea9201c3f1b354e7e641 {"aliquot_tag": "ALQ_eeb438df", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.RNA-Seq.S16_L005_R2.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R2_001.fastq.gz 4082882284 FASTQ S16_L005_R2 unaligned CPTAC3 93f7e830-e290-4baa-8f75-e8d789413ca6 91c00a9e1ad893917a4a0fc4ccbfc872 {"aliquot_tag": "ALQ_eeb438df", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.RNA-Seq.S6_L002_R1.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4446087855 FASTQ S6_L002_R1 unaligned CPTAC3 4597a475-1afc-401c-a790-e2e641db12e8 560c00e727976be0a5cff70f16a03bcc {"aliquot_tag": "ALQ_94746bbf", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01632.RNA-Seq.S6_L002_R2.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4965556419 FASTQ S6_L002_R2 unaligned CPTAC3 7e688d8a-3506-4ff6-971c-3c1e5b717659 73a815bd039133773b8167edd9ac4a44 {"aliquot_tag": "ALQ_94746bbf", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01632.RNA-Seq.transcriptome.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.transcriptome.gdc_realn.bam 9358861161 BAM transcriptome harmonized CPTAC3 c561992d-d50a-4af5-a6ef-b0678f395063 b366c243e2abad0b7090d830d7a6081a {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.RNA-Seq.transcriptome.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.transcriptome.gdc_realn.bam 15665397640 BAM transcriptome harmonized CPTAC3 ba0e999f-b01d-4c83-a145-85c39f631385 ee36502fcd48e8234e61c48b4d350abf {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor"} -C3L-01632.WGS.A C3L-01632 LUAD WGS tissue_normal CPT0086770009 CPT0086770009.WholeGenome.RP-1303.bam 64368846526 BAM aligned CPTAC3 6c6c6bef-9dbe-4f6a-a6f7-b340915d3caa 86466e046f2b9f8a63fda06b5f5a9c46 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.WGS.A.hg38 C3L-01632 LUAD WGS tissue_normal CPT0086770009 2db62d68-1c8d-4571-9533-90d9fdb67f20_wgs_gdc_realn.bam 95101198958 BAM harmonized CPTAC3 1930902f-859c-4a48-932d-0cf76b2ff832 b70d6055024efc2ae5426c856c99c063 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.WGS.N C3L-01632 LUAD WGS blood_normal CPT0087410002 CPT0087410002.WholeGenome.RP-1303.bam 75839296153 BAM aligned CPTAC3 2ebced9f-e2f5-434b-8986-3913a77e3107 d18cee005234c1f82b7793e1a64edaba {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01632.WGS.N.hg38 C3L-01632 LUAD WGS blood_normal CPT0087410002 a1c9700f-78b5-49f7-bb98-15cfdb375f93_wgs_gdc_realn.bam 111279348247 BAM harmonized CPTAC3 f811062c-073b-4f15-8c0d-fc6b28a245dc 420e0c948bf4575ac214d70bc516978f {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01632.WGS.T C3L-01632 LUAD WGS tumor CPT0086750009 CPT0086750009.WholeGenome.RP-1303.bam 64284526074 BAM aligned CPTAC3 ef59b8ce-0e98-47d1-a9be-b88446b17fbb 11e0d0ca11493e99c0c3379087b965b7 {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor"} -C3L-01632.WGS.T.hg38 C3L-01632 LUAD WGS tumor CPT0086750009 e4173c2d-432b-4e6b-9681-448384e946e0_wgs_gdc_realn.bam 92966785855 BAM harmonized CPTAC3 32538bb6-26cc-4064-82c6-1d9540d515d7 20fd5251d8a78234060c6e19a957f1ba {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor"} -C3L-01632.WXS.A C3L-01632 LUAD WXS tissue_normal CPT0086770009 CPT0086770009.WholeExome.RP-1303.bam 32555380405 BAM aligned CPTAC3 6f367226-38c1-4ed0-aea6-60547ecb616c 866fb73191d42548e00628d00f0a2960 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.WXS.A.hg38 C3L-01632 LUAD WXS tissue_normal CPT0086770009 2db62d68-1c8d-4571-9533-90d9fdb67f20_wxs_gdc_realn.bam 44223152920 BAM harmonized CPTAC3 e700b7a2-85f4-498f-bcbe-a0f87fa1c97f c3a8be1cd37057bc3081572cec7a1a93 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01632.WXS.N C3L-01632 LUAD WXS blood_normal CPT0087410002 CPT0087410002.WholeExome.RP-1303.bam 43650327813 BAM aligned CPTAC3 29e6ed0b-12f1-44b4-8b11-de43855a313f 3d806ba8489130c45b6f7dc0d6b42916 {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01632.WXS.N.hg38 C3L-01632 LUAD WXS blood_normal CPT0087410002 a1c9700f-78b5-49f7-bb98-15cfdb375f93_wxs_gdc_realn.bam 59505667335 BAM harmonized CPTAC3 ac5e4172-54a7-4027-a859-dbf0b22c4976 bbc6daf6c8be538cf662f86eda014933 {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01632.WXS.T C3L-01632 LUAD WXS tumor CPT0086750009 CPT0086750009.WholeExome.RP-1303.bam 28078104818 BAM aligned CPTAC3 a5ef49b1-e7b9-4837-a838-b828b76aa85c 37959ed1c2be2cf1f6a9979b0d14f2be {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor"} -C3L-01632.WXS.T.hg38 C3L-01632 LUAD WXS tumor CPT0086750009 e4173c2d-432b-4e6b-9681-448384e946e0_wxs_gdc_realn.bam 38147978709 BAM harmonized CPTAC3 f2ec66b0-d52f-42f1-ba7a-1084eac1e079 37055c087eaf119e2d403c7ca36f0eff {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor"} -C3L-01633.MethArray.Green.T C3L-01633 UCEC Methylation_Array tumor CPT0091910009 202234380062_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3cc557db-2d5e-4fe6-8c25-8fc346bffc78 3a27604b807bb62047a9acc4e600233c {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor"} -C3L-01633.MethArray.Red.T C3L-01633 UCEC Methylation_Array tumor CPT0091910009 202234380062_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 b40d3abd-0bd1-45a5-a6a9-292f5163df77 97fc9c06c17f4922e14af23d4ca14408 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor"} -C3L-01633.miRNA-Seq.S5_L006_R1.T C3L-01633 UCEC miRNA-Seq tumor CPT0091910006 180828_UNC32-K00270_0112_AHWTLNBBXX_AGTCAA_S5_L006_R1_001.unaln.bam 240468549 BAM S5_L006_R1 unaligned CPTAC3 374eb2c1-9edb-4afb-9c6f-78add2b0319e 449f507f10b8243d2f615493bb27d1ec {"aliquot_tag": "ALQ_52f3921f", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01633.miRNA-Seq.T.hg38 C3L-01633 UCEC miRNA-Seq tumor CPT0091910006 bb3b5934-335c-47e6-8c79-fba826085b93_mirnaseq_gdc_realn.bam 267277597 BAM harmonized CPTAC3 6bde9c8f-6e4d-4f03-9359-9b8876c52598 bef4633116c2e92c240bd78fd04ad6e0 {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.chimeric.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.chimeric.gdc_realn.bam 37655641 BAM chimeric harmonized CPTAC3 f7a18eec-8087-4d66-9340-f09b9723546e 78bd65e2534b2353543bbfe7a5cb5767 {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.chimeric.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.chimeric.gdc_realn.bam 181743091 BAM chimeric harmonized CPTAC3 ca395e24-91f5-45d7-bb5d-7ced649b0b71 b412ed9312b779de2788b9742cd85289 {"aliquot_tag": "ALQ_d2b0956f", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.genomic.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.genomic.gdc_realn.bam 9504914517 BAM genomic harmonized CPTAC3 b5d8adf6-ef6a-40b1-a196-eaaa3c11d899 caf42b335f26ae526286b27833220f00 {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.genomic.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.genomic.gdc_realn.bam 9575192904 BAM genomic harmonized CPTAC3 5818adb7-1824-41eb-a95b-90e4415311c9 6e72ba76f17ac9d8bfc3be17b47587b1 {"aliquot_tag": "ALQ_d2b0956f", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.S3_L007_R1.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 4452423395 FASTQ S3_L007_R1 unaligned CPTAC3 ff305587-2591-40e3-83a9-fdd4cb6f7d0b c5ed0ba4d3e15378e2cb3a90ecc2dd83 {"aliquot_tag": "ALQ_52f3921f", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.S3_L007_R2.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 4766776796 FASTQ S3_L007_R2 unaligned CPTAC3 9624b90f-a7c0-4a46-9317-a2a0cf016fe8 d00760341add419284aac35fe6bcd50b {"aliquot_tag": "ALQ_52f3921f", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.S94_R1.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R1_001.fastq.gz 6096845634 FASTQ S94_R1 unaligned CPTAC3 ffe93cac-8d42-4933-81ce-05d1f33a19e9 59afd75fb1ce83c4bb9c6fa2f46b6f0d {"aliquot_tag": "ALQ_d2b0956f", "sample": "S94", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.S94_R2.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R2_001.fastq.gz 6348850234 FASTQ S94_R2 unaligned CPTAC3 8458ced5-99a4-4695-b82f-ab063ba599c8 2f4090fa76a735a89c3dc33cae5fe0da {"aliquot_tag": "ALQ_d2b0956f", "sample": "S94", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.transcriptome.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.transcriptome.gdc_realn.bam 10465743240 BAM transcriptome harmonized CPTAC3 b26cb27a-e494-408e-a726-2886dc721618 1dbb3ce3a66a05a3ffdca5c857d7e61e {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor"} -C3L-01633.RNA-Seq.transcriptome.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.transcriptome.gdc_realn.bam 5011680619 BAM transcriptome harmonized CPTAC3 fe485078-a264-4a53-b094-cdd94fc404e0 9aa908f0fc6a7ebb5adf85aacbef3629 {"aliquot_tag": "ALQ_d2b0956f", "gdc_sample_type": "Primary Tumor"} -C3L-01633.WGS.N C3L-01633 UCEC WGS blood_normal CPT0093690002 CPT0093690002.WholeGenome.RP-1303.bam 61130833842 BAM aligned CPTAC3 6c7812b2-1bb0-41c1-ae41-0668dc5cb7d7 ae89f70d4c240fdd0f80324e8bc44024 {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01633.WGS.N.hg38 C3L-01633 UCEC WGS blood_normal CPT0093690002 642bdd21-0fca-4840-bc9d-17e7c8d1ae6c_wgs_gdc_realn.bam 88990464652 BAM harmonized CPTAC3 259d2e1b-0e58-4d98-b661-fb82f53fc01c 9ad70a37bbab501cb63eca9364f1dadd {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01633.WGS.T C3L-01633 UCEC WGS tumor CPT0091910009 CPT0091910009.WholeGenome.RP-1303.bam 67725350566 BAM aligned CPTAC3 51b220e1-97ee-44e8-bac9-7de00d0bdb8c 55b9e37bb61272b7f2da669e443dc515 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor"} -C3L-01633.WGS.T.hg38 C3L-01633 UCEC WGS tumor CPT0091910009 df0ba400-4c87-462a-857f-72314f913d7d_wgs_gdc_realn.bam 98622471129 BAM harmonized CPTAC3 6403e3c2-f49b-4e8d-a9f6-ae1f61138987 ef74f4fe3580e7c3cee495932ca6492a {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor"} -C3L-01633.WXS.N C3L-01633 UCEC WXS blood_normal CPT0093690002 CPT0093690002.WholeExome.RP-1303.bam 40921988553 BAM aligned CPTAC3 d605d750-36e1-483b-84ac-560465cf27b0 e10bd399667b9e958ec9526944d876a7 {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01633.WXS.N.hg38 C3L-01633 UCEC WXS blood_normal CPT0093690002 642bdd21-0fca-4840-bc9d-17e7c8d1ae6c_wxs_gdc_realn.bam 56410933444 BAM harmonized CPTAC3 f4086270-5508-420c-8f10-9a358b012151 cecd9b7a8d8cdc53e306338bbbbbe1da {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01633.WXS.T C3L-01633 UCEC WXS tumor CPT0091910009 CPT0091910009.WholeExome.RP-1303.bam 32380677009 BAM aligned CPTAC3 df3b907c-8c19-43f3-b7b3-fccd15951299 82f47df717a0a12b6c12c756eb267082 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor"} -C3L-01633.WXS.T.hg38 C3L-01633 UCEC WXS tumor CPT0091910009 df0ba400-4c87-462a-857f-72314f913d7d_wxs_gdc_realn.bam 44945424256 BAM harmonized CPTAC3 02568b9d-c100-4e27-8e6d-4a1d4094ed20 45e3747ba1a793c74dc5aaad33c30189 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor"} -C3L-01637.ADD_77a5f1d7.MethArray.Green.T C3L-01637 PDA Methylation_Array tumor CPT0086190010 202234380094_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8ff5e44b-839b-46d9-b452-5282ac24a21b 376ef9fe429e0e667d1303f94c651409 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01637.ADD_77a5f1d7.MethArray.Red.T C3L-01637 PDA Methylation_Array tumor CPT0086190010 202234380094_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 b04a5c58-6604-403c-b348-54885c8afa45 4af78a3c5d01e5680f2f84a1f7e1e847 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01637.ADD_77a5f1d7.WGS.T C3L-01637 PDA WGS tumor CPT0086190010 CPT0086190010.WholeGenome.RP-1303.bam 54986970867 BAM aligned CPTAC3 0d348c17-aa25-43f4-a56d-0847fb8d32b1 2040a34493dd0020ba16a4b59adcaf60 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01637.ADD_77a5f1d7.WGS.T.hg38 C3L-01637 PDA WGS tumor CPT0086190010 5715552c-426e-4d4d-a0bf-9bcbe73be6bc_wgs_gdc_realn.bam 81281606863 BAM harmonized CPTAC3 dff13367-5082-43de-a47b-b507d7245a80 a5d54b559d6a8696bfc4edbcf2443ebb {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01637.ADD_77a5f1d7.WXS.T C3L-01637 PDA WXS tumor CPT0086190010 CPT0086190010.WholeExome.RP-1303.bam 40757632012 BAM aligned CPTAC3 da92ef37-50af-4c1d-9734-a3fe9f73b4e0 d522b9400cbfb7a5887846f378b6d739 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01637.ADD_77a5f1d7.WXS.T.hg38 C3L-01637 PDA WXS tumor CPT0086190010 5715552c-426e-4d4d-a0bf-9bcbe73be6bc_wxs_gdc_realn.bam 56222723082 BAM harmonized CPTAC3 cd9336c1-3b80-4550-b90c-3f74778c936a 197111a62281522de45829fcfdd4483a {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01637.MethArray.Green.A C3L-01637 PDA Methylation_Array tissue_normal CPT0086210006 203561620072_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cf076a2e-4db8-43ac-b0c1-ce742395b8f7 bbf7684c2352c14d54c0b44163a06946 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.MethArray.Red.A C3L-01637 PDA Methylation_Array tissue_normal CPT0086210006 203561620072_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b000d67f-53eb-4fcc-82c5-0c4f4686ebed 75efadc06cbeace0b0a8a99fd04cc33a {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.miRNA-Seq.A.hg38 C3L-01637 PDA miRNA-Seq tissue_normal CPT0086210009 783bd6ee-102c-4778-bb1e-b2af80b71dc5_mirnaseq_gdc_realn.bam 239574490 BAM harmonized CPTAC3 027f406d-df5b-4241-9b5f-daf329925572 46be579c36a9de2d12062a4e3e7a0915 {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.miRNA-Seq.S14_L001_R1.A C3L-01637 PDA miRNA-Seq tissue_normal CPT0086210009 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 217868198 BAM S14_L001_R1 unaligned CPTAC3 47daf1ae-4c2a-41af-b8a9-daf307b08a3c 7c8e3a671578d91bf4fbac3b673bd942 {"aliquot_tag": "ALQ_a186415d", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.miRNA-Seq.S34_L008_R1.T C3L-01637 PDA miRNA-Seq tumor CPT0086190007 180724_UNC32-K00270_0106_BHWK3MBBXX_GGCTAC_S34_L008_R1_001.unaln.bam 297668846 BAM S34_L008_R1 unaligned CPTAC3 5dde1548-8e04-4445-ad93-f60ef3bb2fbb 6f3d667b071d5f7e17a3f26e0213fa56 {"aliquot_tag": "ALQ_f0da5535", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01637.miRNA-Seq.T.hg38 C3L-01637 PDA miRNA-Seq tumor CPT0086190007 c3e06381-19cc-40d8-9d04-09863dd38aac_mirnaseq_gdc_realn.bam 316856389 BAM harmonized CPTAC3 f51c8113-8dc0-4b9e-983d-094063c6faaa ca57da6e487d3b739d3669d52040204f {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor"} -C3L-01637.RNA-Seq.chimeric.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.chimeric.gdc_realn.bam 128121013 BAM chimeric harmonized CPTAC3 55b6428e-de9b-4db3-8df5-6d85171abf71 8f47594d8e55902e554db4e04ae3e9ba {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.RNA-Seq.chimeric.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.chimeric.gdc_realn.bam 31099964 BAM chimeric harmonized CPTAC3 c2044790-867b-4f46-bbf0-2f7a19238ddb 1dcb34920b7be27e04ac81a6fdb86e3c {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor"} -C3L-01637.RNA-Seq.genomic.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.genomic.gdc_realn.bam 9875410016 BAM genomic harmonized CPTAC3 8db0a3bd-7aa8-4aea-9fb8-eece18479eae cefbdbde5e9002a57005d2c7ddc69be2 {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.RNA-Seq.genomic.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.genomic.gdc_realn.bam 8927040724 BAM genomic harmonized CPTAC3 2cc7fd2c-3a8e-4167-a5df-773a7d386f16 6d0a8ada6ac1acb0a81309b9a460c6bd {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor"} -C3L-01637.RNA-Seq.S10_L003_R1.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R1_001.fastq.gz 4127858067 FASTQ S10_L003_R1 unaligned CPTAC3 e29fc9d5-e08c-44d7-9612-a6309a767e50 130f6f8abf5e4adac98b0f8539ff56e4 {"aliquot_tag": "ALQ_f0da5535", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01637.RNA-Seq.S10_L003_R2.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R2_001.fastq.gz 4754292520 FASTQ S10_L003_R2 unaligned CPTAC3 84cb105d-3e3d-42e5-a250-bb4aa20ce824 6412966593342f89fa54dc6c84ad04e2 {"aliquot_tag": "ALQ_f0da5535", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01637.RNA-Seq.S19_L005_R1.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 4055868945 FASTQ S19_L005_R1 unaligned CPTAC3 e6168402-60ed-4ae8-8b31-78c510877930 ac0eb072deaadaf2370aad9e6e460696 {"aliquot_tag": "ALQ_a186415d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.RNA-Seq.S19_L005_R2.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 4460444987 FASTQ S19_L005_R2 unaligned CPTAC3 8047c467-d41a-4ecb-9698-1dd8007aa4a8 096e52b84b8e1dcb0470365352ed6854 {"aliquot_tag": "ALQ_a186415d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.RNA-Seq.transcriptome.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.transcriptome.gdc_realn.bam 10231142589 BAM transcriptome harmonized CPTAC3 636177a1-8569-4086-b582-4facf6af065e be4871b9f577e35dc71ba18ffa173885 {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.RNA-Seq.transcriptome.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.transcriptome.gdc_realn.bam 13741567201 BAM transcriptome harmonized CPTAC3 85797a6c-9d70-4d55-8e57-0be3b2ad8d78 e8840be71eb72fdfb1908d9d0f188bfd {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor"} -C3L-01637.Targeted.T C3L-01637 PDA Targeted_Sequencing tumor CPT0086190010_1 CPT0086190010_1.CustomSelection.RP-1303.PDO-18786.bam 6846991472 BAM aligned CPTAC3 c0dff626-aa16-4e58-b243-52617cedb920 5634e7ca7f4427e543b897dd0e89326a {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor"} -C3L-01637.Targeted.T.hg38 C3L-01637 PDA Targeted_Sequencing tumor CPT0086190010_1 43df9f52-8514-4599-8ee0-ddf44db2324c_targetedsequencing_gdc_realn.bam 9536392146 BAM harmonized CPTAC3 5f5b4b2c-d536-4a0d-b307-600b8aaf1e58 1b2270153271417841dec14a3d299b61 {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor"} -C3L-01637.WGS.A C3L-01637 PDA WGS tissue_normal CPT0086210006 CPT0086210006.WholeGenome.RP-1303.bam 61965696683 BAM aligned CPTAC3 5fbce78f-98e6-42fb-8ba7-67a262fa65fd 9d46359a8b65387694e1fba888a625d1 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.WGS.A.hg38 C3L-01637 PDA WGS tissue_normal CPT0086210006 c053a6a4-f6f4-4654-8983-0ce308df090c_wgs_gdc_realn.bam 90956173717 BAM harmonized CPTAC3 23feb2c6-7d75-4509-aabb-d2bc99004ba7 92515c125606958499be534884d98d38 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.WGS.N C3L-01637 PDA WGS blood_normal CPT0087390002 CPT0087390002.WholeGenome.RP-1303.bam 62112483282 BAM aligned CPTAC3 09b55453-c647-4e15-90f4-bbb59cb97296 d9b914dcd85176f500e009542e1cef65 {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal"} -C3L-01637.WGS.N.hg38 C3L-01637 PDA WGS blood_normal CPT0087390002 c502c419-51a2-4235-a80b-213211cb1285_wgs_gdc_realn.bam 91268074583 BAM harmonized CPTAC3 b0958b14-258a-42c8-9208-a0d1224b16b4 44ef7c1bf4c00830c996229b6f3d6b29 {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal"} -C3L-01637.WXS.A C3L-01637 PDA WXS tissue_normal CPT0086210006 CPT0086210006.WholeExome.RP-1303.bam 24285591771 BAM aligned CPTAC3 2fc93a01-1f6c-454e-a665-251af39833a9 9b07a2e624d43b31515c5fb6de0a1684 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.WXS.A.hg38 C3L-01637 PDA WXS tissue_normal CPT0086210006 c053a6a4-f6f4-4654-8983-0ce308df090c_wxs_gdc_realn.bam 33108672711 BAM harmonized CPTAC3 5d2c4008-b76c-41a9-870d-172ef5194bff 5cef185b99e3dec5cad02409f9faa7f9 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01637.WXS.N C3L-01637 PDA WXS blood_normal CPT0087390002 CPT0087390002.WholeExome.RP-1303.bam 35419211739 BAM aligned CPTAC3 a681fc62-53f4-4496-bb8a-7846e1a35f20 4c11b8634e2cc9902b0dafc26df58de8 {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal"} -C3L-01637.WXS.N.hg38 C3L-01637 PDA WXS blood_normal CPT0087390002 c502c419-51a2-4235-a80b-213211cb1285_wxs_gdc_realn.bam 48148385522 BAM harmonized CPTAC3 0b5b49f8-940f-4f67-bcdb-8f16a38ada10 92d0f4100ae7f7ce87a47286ccc2bd6d {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal"} -C3L-01637.WXS.T C3L-01637 PDA WXS tumor CPT0086190010_1 CPT0086190010_1.WholeExome.RP-1303.bam 69015497243 BAM aligned CPTAC3 b80b63f6-7a70-4c26-935d-88f1f17964fc 077adafee790a66e0081593cbffa0ed3 {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor"} -C3L-01637.WXS.T.hg38 C3L-01637 PDA WXS tumor CPT0086190010_1 43df9f52-8514-4599-8ee0-ddf44db2324c_wxs_gdc_realn.bam 94491110315 BAM harmonized CPTAC3 14900b7d-0fc5-4480-a94d-a42ed86e0a01 0ac1a0fb40349aff836726630129939e {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor"} -C3L-01639.MethArray.Green.T C3L-01639 UCEC Methylation_Array tumor CPT0091780009 202234380054_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 80a05653-270a-4d9b-b0a7-4c4f2580fd71 db780019b29481c995c48e62755f51b4 {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor"} -C3L-01639.MethArray.Red.T C3L-01639 UCEC Methylation_Array tumor CPT0091780009 202234380054_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 538fbf9d-3d45-4297-b2b1-91cdbb47d7a0 76d16b24aabbfcce605b72a9b54ed778 {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor"} -C3L-01639.miRNA-Seq.A.hg38 C3L-01639 UCEC miRNA-Seq tissue_normal CPT0091790009 d1969a4c-7011-49d4-9d90-33986d5f5934_mirnaseq_gdc_realn.bam 301663258 BAM harmonized CPTAC3 5b7b6e7c-3e0c-4157-a152-a6b31f71d107 d24da330e53e0089783f95ef505f9119 {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.miRNA-Seq.S22_L005_R1.A C3L-01639 UCEC miRNA-Seq tissue_normal CPT0091790009 181113_UNC31-K00269_0164_AH23NNBBXY_TCCCGA_S22_L005_R1_001.unaln.bam 265418180 BAM S22_L005_R1 unaligned CPTAC3 368d2166-92bc-48be-860d-f935236a4ccb 3ab7ede3b7a3ac8a46e303bc5985a654 {"aliquot_tag": "ALQ_c836a53f", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.miRNA-Seq.S2_L006_R1.T C3L-01639 UCEC miRNA-Seq tumor CPT0091780006 180828_UNC32-K00270_0112_AHWTLNBBXX_TAGCTT_S2_L006_R1_001.unaln.bam 256432667 BAM S2_L006_R1 unaligned CPTAC3 b28c5abf-4076-4071-b444-e3771b21ed2a 52b7c625b1d96788eda84ca5a90a71ba {"aliquot_tag": "ALQ_65e9911e", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01639.miRNA-Seq.T.hg38 C3L-01639 UCEC miRNA-Seq tumor CPT0091780006 8564e10c-07b6-4a18-ba76-91445ed9d078_mirnaseq_gdc_realn.bam 282493696 BAM harmonized CPTAC3 5ce5a181-8386-4268-99af-b6f7af82999b cd38cf7bd1da4ef9fe6dde187090b93e {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.chimeric.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.chimeric.gdc_realn.bam 37892782 BAM chimeric harmonized CPTAC3 3942208c-033f-430a-a291-655bb6ce9977 f8f4e06caf18d414a6fd069def59337e {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.RNA-Seq.chimeric.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.chimeric.gdc_realn.bam 41166393 BAM chimeric harmonized CPTAC3 1b0601ea-3e49-48da-bf76-8c267388d21a 7122ff4ec669892393e03381510d1ce6 {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.chimeric.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.chimeric.gdc_realn.bam 265210569 BAM chimeric harmonized CPTAC3 1a345f59-45c0-4ae7-a61c-b75ab7cab282 4fdcb8749b802da64679cec20fdc7c92 {"aliquot_tag": "ALQ_6d802b0e", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.genomic.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.genomic.gdc_realn.bam 9804456650 BAM genomic harmonized CPTAC3 e856f494-c144-4016-b657-2a9dba02fd01 e3823455665556dd532e02da6c9ec8ba {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.RNA-Seq.genomic.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.genomic.gdc_realn.bam 10609031851 BAM genomic harmonized CPTAC3 db3fc1d7-6286-4cf3-9f3f-982cc185efe4 0d23f97acb6fdc575fe4bd58276e9f19 {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.genomic.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.genomic.gdc_realn.bam 11216178044 BAM genomic harmonized CPTAC3 cc771ecb-f4d3-4a70-ab3d-c91976ee4967 b2d3a3ded0781de29da28eb7c78fa36f {"aliquot_tag": "ALQ_6d802b0e", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.S13_L004_R1.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 4219194039 FASTQ S13_L004_R1 unaligned CPTAC3 464f159b-5e28-455d-ad4c-e804d7891f38 915b5894e76d198e87707aeef5891151 {"aliquot_tag": "ALQ_c836a53f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.RNA-Seq.S13_L004_R2.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4617092075 FASTQ S13_L004_R2 unaligned CPTAC3 beb2f356-caaf-41d2-8bdb-3b7a63094247 39aeef49003dfde9dff244d6ae5de009 {"aliquot_tag": "ALQ_c836a53f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.RNA-Seq.S6_L008_R1.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4893948768 FASTQ S6_L008_R1 unaligned CPTAC3 816781bb-3b5f-46a9-9f46-c39afa6ff2e5 5e230b1960121e7212685d6177ecc616 {"aliquot_tag": "ALQ_65e9911e", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.S6_L008_R2.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 5349775554 FASTQ S6_L008_R2 unaligned CPTAC3 8d511897-c67c-4325-b924-c90d6d6b38d3 f30bfad0b41a56e4caa776685ecf0d1f {"aliquot_tag": "ALQ_65e9911e", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.S85_R1.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R1_001.fastq.gz 6969742686 FASTQ S85_R1 unaligned CPTAC3 ae0bf109-1bd2-49b1-a4e0-190613a29dbb bd4fe80a32bb3df130f203d395756149 {"aliquot_tag": "ALQ_6d802b0e", "sample": "S85", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.S85_R2.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R2_001.fastq.gz 7296880555 FASTQ S85_R2 unaligned CPTAC3 8b6b17e4-cffd-48ed-9db2-751bfdb8b22a af7be891a534056c0ca21f1bf5ab77a8 {"aliquot_tag": "ALQ_6d802b0e", "sample": "S85", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.transcriptome.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.transcriptome.gdc_realn.bam 11821399776 BAM transcriptome harmonized CPTAC3 22cde8be-57d4-4594-8434-db26bc40d5ff 02e457540023be95195459d93bd62b7d {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.RNA-Seq.transcriptome.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.transcriptome.gdc_realn.bam 13379930032 BAM transcriptome harmonized CPTAC3 b82bb41a-6d7b-4d00-8ab2-f11c0a1e5f47 d0cf1488ae5a38ed155d87b9934ef3e5 {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor"} -C3L-01639.RNA-Seq.transcriptome.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.transcriptome.gdc_realn.bam 6269449426 BAM transcriptome harmonized CPTAC3 04570948-2386-408d-86b3-66d9be1da42f 1add702d844d4c12038ac83f1e467328 {"aliquot_tag": "ALQ_6d802b0e", "gdc_sample_type": "Primary Tumor"} -C3L-01639.WGS.A C3L-01639 UCEC WGS tissue_normal CPT0091790006 CPT0091790006.WholeGenome.RP-1303.bam 52934139541 BAM aligned CPTAC3 25e53d0a-437c-4c0c-9a8a-576453423932 401d8309cce17e665f0bbcb9e235b94f {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.WGS.A.hg38 C3L-01639 UCEC WGS tissue_normal CPT0091790006 1ab11a59-3815-4127-9b4c-4dc9f026aec9_wgs_gdc_realn.bam 78213779820 BAM harmonized CPTAC3 0a22bbdd-efb0-4918-84c3-ec98a5bafa9b 6c2b0928d6936072eb960ad8f15ed28b {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.WGS.N C3L-01639 UCEC WGS blood_normal CPT0093660002 CPT0093660002.WholeGenome.RP-1303.bam 67527712837 BAM aligned CPTAC3 7eaa3e77-d329-4721-842c-1c18597e24f5 615e92a02df31231eccd2d57f38bde11 {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01639.WGS.N.hg38 C3L-01639 UCEC WGS blood_normal CPT0093660002 82fa485a-068e-486a-aa8c-878ed3a81d8a_wgs_gdc_realn.bam 99800594570 BAM harmonized CPTAC3 36ca42be-b102-4493-a3f3-6300f4de1ace 22c8d26cfdd5ad9ff5df3ce43c9aa54d {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01639.WGS.T C3L-01639 UCEC WGS tumor CPT0091780009 CPT0091780009.WholeGenome.RP-1303.bam 57840401909 BAM aligned CPTAC3 61448e2b-e8f6-48f0-9799-91d664eee44a ba7f1722873dbfb08b713b655813eecb {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor"} -C3L-01639.WGS.T.hg38 C3L-01639 UCEC WGS tumor CPT0091780009 80dbf861-e83b-4e9a-be3a-05613a4e9b17_wgs_gdc_realn.bam 84438577936 BAM harmonized CPTAC3 d3866b3d-f2ae-441d-9ac4-1df2f6c6cb87 8e63d1272811da3a4266b44a2394eb8b {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor"} -C3L-01639.WXS.A C3L-01639 UCEC WXS tissue_normal CPT0091790006 CPT0091790006.WholeExome.RP-1303.bam 21128498239 BAM aligned CPTAC3 7ebac9cd-cf60-412e-ad31-6aa53a12c8e1 8b86ef21a0d7709df1ed70955a9bb77a {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.WXS.A.hg38 C3L-01639 UCEC WXS tissue_normal CPT0091790006 1ab11a59-3815-4127-9b4c-4dc9f026aec9_wxs_gdc_realn.bam 28967625898 BAM harmonized CPTAC3 368351e0-8755-47e0-8397-59ae0db162d1 24e915cac716ee2045ec583972d3d269 {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01639.WXS.N C3L-01639 UCEC WXS blood_normal CPT0093660002 CPT0093660002.WholeExome.RP-1303.bam 29730589996 BAM aligned CPTAC3 04bef61d-bc46-48e0-ae71-be0047c813da 9933a67892ff986d3fa3ad609a02d9fc {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01639.WXS.N.hg38 C3L-01639 UCEC WXS blood_normal CPT0093660002 82fa485a-068e-486a-aa8c-878ed3a81d8a_wxs_gdc_realn.bam 40768753602 BAM harmonized CPTAC3 d29e9681-fd30-4c8f-85b9-401a73fdb4d1 3544e7ddefe7aaae811c35d1bddf197f {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01639.WXS.T C3L-01639 UCEC WXS tumor CPT0091780009 CPT0091780009.WholeExome.RP-1303.bam 34381824182 BAM aligned CPTAC3 c6b36fc6-ef8b-459c-a012-a150a8c5755e 4f83d9c67a05a02e4184ed7c2cdc2c6a {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor"} -C3L-01639.WXS.T.hg38 C3L-01639 UCEC WXS tumor CPT0091780009 80dbf861-e83b-4e9a-be3a-05613a4e9b17_wxs_gdc_realn.bam 48328828649 BAM harmonized CPTAC3 8b72f9d2-2e8e-4d11-b59d-c82e17c0f788 287829e1f0053f6f5bc6f20792a1b227 {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor"} -C3L-01662.MethArray.Green.T C3L-01662 PDA Methylation_Array tumor CPT0092630009 202234380099_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 585e9252-150c-4c04-8cce-a42245938452 02bdc017649cadbad35bd0a93adc39eb {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor"} -C3L-01662.MethArray.Red.T C3L-01662 PDA Methylation_Array tumor CPT0092630009 202234380099_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 5f4946e1-9fc2-4fc0-8fb6-97f13358cd07 dad40a3bd091bd2a40b2f967976e305d {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor"} -C3L-01662.miRNA-Seq.S13_L007_R1.T C3L-01662 PDA miRNA-Seq tumor CPT0092630006 180724_UNC32-K00270_0106_BHWK3MBBXX_CGGAAT_S13_L007_R1_001.unaln.bam 296493159 BAM S13_L007_R1 unaligned CPTAC3 065c8287-8f6b-4f41-be00-a8adc12ef45a 02eed21b541f4be0d62418d8e212eb69 {"aliquot_tag": "ALQ_e88d6937", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01662.miRNA-Seq.T.hg38 C3L-01662 PDA miRNA-Seq tumor CPT0092630006 e7b35aee-bee6-4beb-98ff-70f9b107c7dd_mirnaseq_gdc_realn.bam 320023181 BAM harmonized CPTAC3 4b5f4348-a236-40b0-896e-46d76c9f3364 04e8d3543d60ebdb127c48e3d82b820d {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor"} -C3L-01662.RNA-Seq.chimeric.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.chimeric.gdc_realn.bam 37008871 BAM chimeric harmonized CPTAC3 419f757d-c444-4c25-a2f1-b31cfb3f7a31 4f5f89f57ed35fc0b0173d78829e87f5 {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor"} -C3L-01662.RNA-Seq.genomic.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.genomic.gdc_realn.bam 9832151069 BAM genomic harmonized CPTAC3 249e02ac-fd25-4f8c-a81a-66b738a5b9c3 9a584ea77456c86918637ca74bb0fea2 {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor"} -C3L-01662.RNA-Seq.S15_L004_R1.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 4293253378 FASTQ S15_L004_R1 unaligned CPTAC3 b8342ecf-6779-436c-bcfa-55abd631e62e 124f285e0a9ee351c55c8f54beff952e {"aliquot_tag": "ALQ_e88d6937", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01662.RNA-Seq.S15_L004_R2.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4707365099 FASTQ S15_L004_R2 unaligned CPTAC3 a55017a7-697e-4dba-b4db-e3e7c6399e88 2ee26c40454fed188c98d6269884249a {"aliquot_tag": "ALQ_e88d6937", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01662.RNA-Seq.transcriptome.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.transcriptome.gdc_realn.bam 12256923833 BAM transcriptome harmonized CPTAC3 00763025-7410-4dd4-b50b-6e3d8cbecb42 d65f35a4b4a0e90ec3fe996a69119e84 {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor"} -C3L-01662.Targeted.T C3L-01662 PDA Targeted_Sequencing tumor CPT0092630009_1 CPT0092630009_1.CustomSelection.RP-1303.PDO-18786.bam 3495479155 BAM aligned CPTAC3 514194dd-d0d5-45fa-920d-ba2e810c9035 a2fceb03d18f47f46ebc23b08151398d {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor"} -C3L-01662.Targeted.T.hg38 C3L-01662 PDA Targeted_Sequencing tumor CPT0092630009_1 2a4a409b-1e69-4ada-82ca-aa5fb68d80e2_targetedsequencing_gdc_realn.bam 4803356895 BAM harmonized CPTAC3 2cadca36-b201-438a-9ddf-742404cb856f fcdb91749718d0c145e81d3b99bbe331 {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor"} -C3L-01662.WGS.N C3L-01662 PDA WGS blood_normal CPT0093720002 CPT0093720002.WholeGenome.RP-1303.bam 58777685282 BAM aligned CPTAC3 0788de23-154b-4c6e-ba64-1e34d4f37a5b 615767e3030a747b71167435f270a714 {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01662.WGS.N.hg38 C3L-01662 PDA WGS blood_normal CPT0093720002 2f5a49e9-c6f0-445e-80b9-b66e560c5255_wgs_gdc_realn.bam 85057139736 BAM harmonized CPTAC3 b7414b32-3c62-4400-9382-f438829f3c30 c7d8a93371bddc0e373eec37d56b40b9 {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01662.WGS.T C3L-01662 PDA WGS tumor CPT0092630009 CPT0092630009.WholeGenome.RP-1303.bam 66777477206 BAM aligned CPTAC3 d29f671f-4c7b-46ff-ac2f-d5192404cc76 8d567f99ea1d72c297b378ca76208d47 {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor"} -C3L-01662.WGS.T.hg38 C3L-01662 PDA WGS tumor CPT0092630009 d4ac8568-7108-410e-ae03-a8596a8482b8_wgs_gdc_realn.bam 99047758223 BAM harmonized CPTAC3 9de1387c-9399-40e4-8c83-9f4e6dcde134 939522d26a8b849f4b38ae07077659e2 {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor"} -C3L-01662.WXS.N C3L-01662 PDA WXS blood_normal CPT0093720002 CPT0093720002.WholeExome.RP-1303.bam 33637402878 BAM aligned CPTAC3 3bb889aa-f7b8-4d4a-a29b-d0c523965f30 4c184d3a9787e115ece9a86eb6819328 {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01662.WXS.N.hg38 C3L-01662 PDA WXS blood_normal CPT0093720002 2f5a49e9-c6f0-445e-80b9-b66e560c5255_wxs_gdc_realn.bam 46191000322 BAM harmonized CPTAC3 79fd961c-df7e-4735-bf0b-a4bf65c7b2d2 224109e97ca1c88eae36f05954ff2bab {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01662.WXS.T C3L-01662 PDA WXS tumor CPT0092630009_1 CPT0092630009_1.WholeExome.RP-1303.bam 69841485124 BAM aligned CPTAC3 376fdfac-0fb2-49fc-b668-cba1db9819b6 6626e2f5d62a7b4eed8f943fcf8e2a21 {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor"} -C3L-01662.WXS.T C3L-01662 PDA WXS tumor CPT0092630009 CPT0092630009.WholeExome.RP-1303.bam 46214200542 BAM aligned CPTAC3 c043fb0c-d2f2-4974-bbd5-f2b0aad49eff ecc881fe79171a529da2c99c4068fb5b {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor"} -C3L-01662.WXS.T.hg38 C3L-01662 PDA WXS tumor CPT0092630009_1 2a4a409b-1e69-4ada-82ca-aa5fb68d80e2_wxs_gdc_realn.bam 97320065371 BAM harmonized CPTAC3 7e9f0e06-ebe2-430c-9c76-af6cfd10c833 feeb0dec12275750982a9836af7c6e1a {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor"} -C3L-01662.WXS.T.hg38 C3L-01662 PDA WXS tumor CPT0092630009 d4ac8568-7108-410e-ae03-a8596a8482b8_wxs_gdc_realn.bam 64928295924 BAM harmonized CPTAC3 0b47149d-59b4-4b38-a4da-09b45b194dc7 dd94f82e05ced20765e8dd48e223eaf8 {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor"} -C3L-01663.MethArray.Green.A C3L-01663 LSCC Methylation_Array tissue_normal CPT0091620006 203219670117_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 43779177-009b-4b30-bc32-d708f0e8e81b c56388df98c0ef1fb6e76b8d644b499a {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.MethArray.Green.T C3L-01663 LSCC Methylation_Array tumor CPT0091610009 202234370095_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8b0ec21a-0810-46b3-874b-c2d2639661b3 d6e69f5ec327a78cdb9df936681615bf {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor"} -C3L-01663.MethArray.Red.A C3L-01663 LSCC Methylation_Array tissue_normal CPT0091620006 203219670117_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 0bd65a19-f8cf-4d41-abad-a95c7c0ee18a 33f5df1c831d3d190fdbbe9f881dcabd {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.MethArray.Red.T C3L-01663 LSCC Methylation_Array tumor CPT0091610009 202234370095_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 9a6ed0f4-f442-4e2c-9926-fb9faf0d2c46 8b1ef7c9d2f0e415244328e036477b1e {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor"} -C3L-01663.miRNA-Seq.A.hg38 C3L-01663 LSCC miRNA-Seq tissue_normal CPT0091620009 110cb655-fe8b-4831-8419-895782fa8c1f_mirnaseq_gdc_realn.bam 241753043 BAM harmonized CPTAC3 c6970efc-61ee-485c-8d5f-2b89c2661fcd 426cb64eef9dde97e2a67dfead61374e {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.miRNA-Seq.S17_L006_R1.T C3L-01663 LSCC miRNA-Seq tumor CPT0091610006 180828_UNC32-K00270_0112_AHWTLNBBXX_CAGATC_S17_L006_R1_001.unaln.bam 248078949 BAM S17_L006_R1 unaligned CPTAC3 94024610-80a1-4c51-bf4f-4770302fa6aa d00c3580ae5f324cef6c76a01040f944 {"aliquot_tag": "ALQ_a3a520ca", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01663.miRNA-Seq.S42_L006_R1.A C3L-01663 LSCC miRNA-Seq tissue_normal CPT0091620009 181113_UNC31-K00269_0164_AH23NNBBXY_GTCCGC_S42_L006_R1_001.unaln.bam 216683449 BAM S42_L006_R1 unaligned CPTAC3 8573ec1a-2dbd-4e32-8d74-49af6a8ecfc6 f62e5254caf5fff1a75ebd77f1c3c51c {"aliquot_tag": "ALQ_74ba478b", "sample": "S42", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.miRNA-Seq.T.hg38 C3L-01663 LSCC miRNA-Seq tumor CPT0091610006 1edce407-e371-4a95-9f8b-7d3a95969381_mirnaseq_gdc_realn.bam 273527978 BAM harmonized CPTAC3 6ca2320b-c0dc-4a07-8179-0cfdae5a4f7a 5e33aef34ce4e8bdb3743f418baee079 {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor"} -C3L-01663.RNA-Seq.chimeric.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.chimeric.gdc_realn.bam 26527097 BAM chimeric harmonized CPTAC3 de2e4ee5-e3d2-4631-bc2a-34dde385d02e c0b95b99e9640a7de1d54fff8cd566f8 {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.RNA-Seq.chimeric.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.chimeric.gdc_realn.bam 34595374 BAM chimeric harmonized CPTAC3 ab709015-f458-454b-b089-64fe11f59ecd 2e1ffe422cbac7839318723526d4d60a {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor"} -C3L-01663.RNA-Seq.genomic.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.genomic.gdc_realn.bam 6839774564 BAM genomic harmonized CPTAC3 2776a5f6-132b-49a1-840b-88d6fa627183 311205b535d9acf66d7c8b6e8d32ba4b {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.RNA-Seq.genomic.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.genomic.gdc_realn.bam 9887406355 BAM genomic harmonized CPTAC3 ce880781-f3ec-4b45-b9f8-d4e41f1ae4f5 ca16b6f5cdf1632e5ad72aeb87cd0c4b {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor"} -C3L-01663.RNA-Seq.S11_L003_R1.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3096565657 FASTQ S11_L003_R1 unaligned CPTAC3 0c2f8c50-d1f7-452f-b323-5ec3d9e85455 374d200c8f44ec2f621c394c37a34f4b {"aliquot_tag": "ALQ_74ba478b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.RNA-Seq.S11_L003_R2.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3155433011 FASTQ S11_L003_R2 unaligned CPTAC3 1f657838-9efc-4444-b1b3-8f0addcb0122 dd6b6af503eb40465a99ff67ffda7248 {"aliquot_tag": "ALQ_74ba478b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.RNA-Seq.S1_L001_R1.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4137297556 FASTQ S1_L001_R1 unaligned CPTAC3 73ef597b-8bcb-4b29-8e1a-be4927a883ea 863344a5ae77fc7495f7ee9a21c590aa {"aliquot_tag": "ALQ_a3a520ca", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01663.RNA-Seq.S1_L001_R2.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4728508029 FASTQ S1_L001_R2 unaligned CPTAC3 9592a8a9-47d8-4648-a59a-dcf9b503f518 a5c2cce86e9489c28887beb28e16190d {"aliquot_tag": "ALQ_a3a520ca", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01663.RNA-Seq.transcriptome.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.transcriptome.gdc_realn.bam 8512764587 BAM transcriptome harmonized CPTAC3 e5c738bc-a26c-4544-bc92-09a8f280f535 7b5c0ec073aab38c02527175cf2c8dee {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.RNA-Seq.transcriptome.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.transcriptome.gdc_realn.bam 10320070617 BAM transcriptome harmonized CPTAC3 240558c1-105c-4422-9517-473e9e3ec797 08a9e7b653c5e944f92aec745feeac40 {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor"} -C3L-01663.WGS.A C3L-01663 LSCC WGS tissue_normal CPT0091620006 CPT0091620006.WholeGenome.RP-1303.bam 57205192238 BAM aligned CPTAC3 65b1cd43-76b8-4d0d-b2e1-3a3fb5d9e236 33008d233ac97006bcf72457a6bf2fbb {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.WGS.A.hg38 C3L-01663 LSCC WGS tissue_normal CPT0091620006 d0ea30eb-f465-4c37-86f7-c259ea148c28_wgs_gdc_realn.bam 82854517176 BAM harmonized CPTAC3 d7dfe8b2-35b7-4f03-9cf7-406dee195ed6 ede187914fe0f6bf9add5211bdba055f {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.WGS.N C3L-01663 LSCC WGS blood_normal CPT0093630002 CPT0093630002.WholeGenome.RP-1303.bam 65339829388 BAM aligned CPTAC3 ba4c7980-a360-4c39-b785-891f741e83b3 d7f28f820b3ccdbfc4608afc8e02c880 {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01663.WGS.N.hg38 C3L-01663 LSCC WGS blood_normal CPT0093630002 c0be2772-0404-43bf-87d1-057321de4a1c_wgs_gdc_realn.bam 96362297417 BAM harmonized CPTAC3 2ef0c346-cfe6-4acb-9e4f-8eafe124472b 1ed7a1673c4ad054155377f8ae324eb9 {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01663.WGS.T C3L-01663 LSCC WGS tumor CPT0091610009 CPT0091610009.WholeGenome.RP-1303.bam 68729293186 BAM aligned CPTAC3 2cbe5098-db19-40f0-a8ed-4ee54c608538 40b828a445696232a8937b77045484b3 {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor"} -C3L-01663.WGS.T.hg38 C3L-01663 LSCC WGS tumor CPT0091610009 e712b7fc-5d1d-49f9-b0c7-ec951cf20427_wgs_gdc_realn.bam 97768099192 BAM harmonized CPTAC3 fc1694b8-a22e-4f70-89c7-1fe64d2195b0 dc4b529ec4d6d3c6f72a7bd1f9282a3d {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor"} -C3L-01663.WXS.A C3L-01663 LSCC WXS tissue_normal CPT0091620006 CPT0091620006.WholeExome.RP-1303.bam 36154949954 BAM aligned CPTAC3 72ce16a8-06ed-4ede-b8b6-47765f61d8ab 4646c51a6cdcbeb89acf44d5eb2dda29 {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.WXS.A.hg38 C3L-01663 LSCC WXS tissue_normal CPT0091620006 d0ea30eb-f465-4c37-86f7-c259ea148c28_wxs_gdc_realn.bam 48410809586 BAM harmonized CPTAC3 7aa6f8a1-aee9-445d-94b1-e2ae8b5150b9 ee599c93f8678ede2dc1a70acdb3db59 {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01663.WXS.N C3L-01663 LSCC WXS blood_normal CPT0093630002 CPT0093630002.WholeExome.RP-1303.bam 34448333125 BAM aligned CPTAC3 ddd41190-142d-4aa9-be15-2267f38000f7 f61904f655e8ada9e74edeee7c3ec10a {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01663.WXS.N.hg38 C3L-01663 LSCC WXS blood_normal CPT0093630002 c0be2772-0404-43bf-87d1-057321de4a1c_wxs_gdc_realn.bam 46637050281 BAM harmonized CPTAC3 d739bead-c5df-4370-a6c2-028cd01cca60 b267de4b231630314b18f86cde855195 {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01663.WXS.T C3L-01663 LSCC WXS tumor CPT0091610009 CPT0091610009.WholeExome.RP-1303.bam 31745699084 BAM aligned CPTAC3 b8f04fb5-6980-49c2-9c12-d99122b3672f 7f6b789c9588bce3ee5a86abfe2ab6c0 {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor"} -C3L-01663.WXS.T.hg38 C3L-01663 LSCC WXS tumor CPT0091610009 e712b7fc-5d1d-49f9-b0c7-ec951cf20427_wxs_gdc_realn.bam 44357975751 BAM harmonized CPTAC3 2fea0ef4-a5dc-4fae-b932-caac7d74dd9b 3fc8399b64309443e044256ea38c0a73 {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor"} -C3L-01664.MethArray.Green.T C3L-01664 UCEC Methylation_Array tumor CPT0086490009 202178770111_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f7241a29-1c3c-4896-8480-945ad0721ffc a4c7c09af91ad6d2194fd433686c6c2e {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor"} -C3L-01664.MethArray.Red.T C3L-01664 UCEC Methylation_Array tumor CPT0086490009 202178770111_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 12606df3-3146-4fee-a50f-b24422b40f49 745b948e4dad3098915016d233823795 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor"} -C3L-01664.miRNA-Seq.S21_L006_R1.T C3L-01664 UCEC miRNA-Seq tumor CPT0086490006 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L006_R1_001.unaln.bam 197020247 BAM S21_L006_R1 unaligned CPTAC3 2c7a4e07-ee3e-4fce-bece-9559c232930e 9d1d0e93ca8d25ba3f4573291708c747 {"aliquot_tag": "ALQ_d710f410", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01664.miRNA-Seq.T.hg38 C3L-01664 UCEC miRNA-Seq tumor CPT0086490006 8b056760-06af-4dcd-8113-fc5b634f877e_mirnaseq_gdc_realn.bam 222222001 BAM harmonized CPTAC3 53b40765-b907-4fa3-8127-b36b13955efa 6d54ec84ace5accfe3426e13218063a7 {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.chimeric.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.chimeric.gdc_realn.bam 42293514 BAM chimeric harmonized CPTAC3 8904a35e-e49c-4162-a2ef-c24b4b745cd7 04207dab627dbc27a74dce0e26ce4184 {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.chimeric.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.chimeric.gdc_realn.bam 208877927 BAM chimeric harmonized CPTAC3 8ca4effc-5c3d-43b9-b5e1-6611949220a1 2f51305cafea66187c329f82509f58ba {"aliquot_tag": "ALQ_1ead5dfa", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.genomic.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.genomic.gdc_realn.bam 9451445756 BAM genomic harmonized CPTAC3 e056ea08-71ff-4135-b77b-df5dfa1c132a 34089186b168de167e5631f89d5dad64 {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.genomic.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.genomic.gdc_realn.bam 10170037976 BAM genomic harmonized CPTAC3 78c08458-d1f7-48a8-bae4-482f7d518195 435e93a568b00d8ec4255e4ada812612 {"aliquot_tag": "ALQ_1ead5dfa", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.S11_L003_R1.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R1_001.fastq.gz 4664158765 FASTQ S11_L003_R1 unaligned CPTAC3 55a1e215-8b97-4a2b-bda6-cf10ad5dd700 afb829fcf49f763429d92d75c2ff1f0e {"aliquot_tag": "ALQ_d710f410", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.S11_L003_R2.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R2_001.fastq.gz 5016265899 FASTQ S11_L003_R2 unaligned CPTAC3 a76c2357-4795-47e4-846d-432085fadd08 47c43542e1359583c1f4a55bed10cabb {"aliquot_tag": "ALQ_d710f410", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.S35_R1.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R1_001.fastq.gz 6081444164 FASTQ S35_R1 unaligned CPTAC3 e01e49a0-7a2d-4860-a623-34ff543494a7 6cab759ffa1b0aef16314d8aa3ef6ea3 {"aliquot_tag": "ALQ_1ead5dfa", "sample": "S35", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.S35_R2.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R2_001.fastq.gz 6328288764 FASTQ S35_R2 unaligned CPTAC3 5323af2a-134a-455d-ac16-929b33788c9a b45a888a6aa123979a7e1274658ed60d {"aliquot_tag": "ALQ_1ead5dfa", "sample": "S35", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.transcriptome.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.transcriptome.gdc_realn.bam 12441898934 BAM transcriptome harmonized CPTAC3 ad555ea6-6f1e-42bb-96f0-29796d23ae23 5d27ea279167b74c408021972090756c {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor"} -C3L-01664.RNA-Seq.transcriptome.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.transcriptome.gdc_realn.bam 5000160717 BAM transcriptome harmonized CPTAC3 43346e71-c94e-4dad-a8ac-50ead9592ab1 9669f1e854b025fa68974b2457473f1f {"aliquot_tag": "ALQ_1ead5dfa", "gdc_sample_type": "Primary Tumor"} -C3L-01664.WGS.N C3L-01664 UCEC WGS blood_normal CPT0087420002 CPT0087420002.WholeGenome.RP-1303.bam 66771549643 BAM aligned CPTAC3 8750d8e9-0f1e-4a8c-9d94-fce59c248e33 ed973243b791b60a5476b02a6bee761c {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01664.WGS.N.hg38 C3L-01664 UCEC WGS blood_normal CPT0087420002 d500ddc5-7e3c-4e3b-89a1-ac32ae7d24a5_gdc_realn.bam 100355349082 BAM harmonized CPTAC3 a1dcd820-778b-4d02-92ef-68dd5ba837b5 084a2679ad734620db58eb2b2f761d2e {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01664.WGS.T C3L-01664 UCEC WGS tumor CPT0086490009 CPT0086490009.WholeGenome.RP-1303.bam 74574387437 BAM aligned CPTAC3 3cde246e-6bfc-4997-be3e-f9631fe34483 0f99618f38fb4284e3b30b8a0f2deb65 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor"} -C3L-01664.WGS.T.hg38 C3L-01664 UCEC WGS tumor CPT0086490009 4cf4fb4b-35b7-4431-a8e3-dce12eddc6a3_gdc_realn.bam 113222203524 BAM harmonized CPTAC3 2576642e-2fbe-4c9f-a0b3-57dd90a3219f ac0309239dc451e04b930c02046989e5 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor"} -C3L-01664.WXS.N C3L-01664 UCEC WXS blood_normal CPT0087420002 CPT0087420002.WholeExome.RP-1303.bam 31939741209 BAM aligned CPTAC3 405a059a-1189-4e25-ad7e-8d59cc9c773c c66c96fd263762eaf4c43b123eddc0c0 {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01664.WXS.N.hg38 C3L-01664 UCEC WXS blood_normal CPT0087420002 d500ddc5-7e3c-4e3b-89a1-ac32ae7d24a5_gdc_realn.bam 43771169053 BAM harmonized CPTAC3 9edec9b2-58d2-4207-bc2f-ab81a82195e9 976459e1598cf6c618d340a81e2d5fdf {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal"} -C3L-01664.WXS.T C3L-01664 UCEC WXS tumor CPT0086490009 CPT0086490009.WholeExome.RP-1303.bam 29048575031 BAM aligned CPTAC3 ce2ad533-6347-4a2b-a86f-f7b518ce6e4b 1b36ecbfe3facdaff6bdc6ab2bba3766 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor"} -C3L-01664.WXS.T.hg38 C3L-01664 UCEC WXS tumor CPT0086490009 4cf4fb4b-35b7-4431-a8e3-dce12eddc6a3_gdc_realn.bam 40141706420 BAM harmonized CPTAC3 01eb5b56-cd11-4123-b34d-3b18fe9d16ad 32674cb35dc6f480cddddd8e69089962 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor"} -C3L-01665.MethArray.Green.A C3L-01665 CCRCC Methylation_Array tissue_normal CPT0104510006 204930640024_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e0ce84ce-0181-43dd-9852-3b900e18255b 1364a23e2cc359651ed85e275d74d960 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.MethArray.Green.T C3L-01665 CCRCC Methylation_Array tumor CPT0104500009 202234380054_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 91ea2a78-29c9-410a-9d6e-1fdc75e1e541 92a3ca1bfff926a2c2a5a4b51a577d5d {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor"} -C3L-01665.MethArray.Red.A C3L-01665 CCRCC Methylation_Array tissue_normal CPT0104510006 204930640024_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 24a47833-f921-42e2-bded-681e1ff94eef ddfc0b57345597f4538bafed02ff8d64 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.MethArray.Red.T C3L-01665 CCRCC Methylation_Array tumor CPT0104500009 202234380054_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 7ec5c187-240e-44b3-a9cb-c57487ccc6b9 e03320341e7826cdfaf7878ec8bde34e {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor"} -C3L-01665.miRNA-Seq.A.hg38 C3L-01665 CCRCC miRNA-Seq tissue_normal CPT0104510009 25037772-4350-4114-a3f0-6c2f7d201ed9_mirnaseq_gdc_realn.bam 251945683 BAM harmonized CPTAC3 410d2c5c-9c1a-40d7-b5d2-f7109eb80655 39e568b8f7e2ad24e2a75fded0404779 {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.miRNA-Seq.S37_L007_R1.T C3L-01665 CCRCC miRNA-Seq tumor CPT0104500006 181108_UNC31-K00269_0163_BH23TVBBXY_CGGAAT_S37_L007_R1_001.unaln.bam 239318696 BAM S37_L007_R1 unaligned CPTAC3 5b1d5c50-312a-465e-a5d0-4a0951f0515d b55d5cefed67db3c25bcff9a0a8630f6 {"aliquot_tag": "ALQ_425d5b1b", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01665.miRNA-Seq.S39_L002_R1.A C3L-01665 CCRCC miRNA-Seq tissue_normal CPT0104510009 181119_UNC31-K00269_0165_AH27WCBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 226595441 BAM S39_L002_R1 unaligned CPTAC3 aaaf640f-8356-4aad-b31a-53c443627289 a2291d18e0cc0d5b00a83eadba08ec59 {"aliquot_tag": "ALQ_ef826f3a", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.miRNA-Seq.T.hg38 C3L-01665 CCRCC miRNA-Seq tumor CPT0104500006 eee234ed-d72e-4b0e-bfce-5e6b0e45443f_mirnaseq_gdc_realn.bam 268004909 BAM harmonized CPTAC3 27fc5186-7de1-4475-906e-031f1f0e406b 3929894cd1b6c8c35594483a831a5d51 {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor"} -C3L-01665.RNA-Seq.chimeric.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.chimeric.gdc_realn.bam 33623886 BAM chimeric harmonized CPTAC3 5d095f41-f963-4a99-a095-cd0225165b5b 5b5c8006074d75e47f22a71da957a9d4 {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.RNA-Seq.chimeric.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.chimeric.gdc_realn.bam 33973531 BAM chimeric harmonized CPTAC3 715a8b31-2ab4-4cec-b05c-d63d7fe6eceb 701c8e8777bf763b908db8e0fb58729b {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor"} -C3L-01665.RNA-Seq.genomic.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.genomic.gdc_realn.bam 9974667232 BAM genomic harmonized CPTAC3 01c21cba-a9af-46d1-a80f-0795be983fb1 ba2ac44736e5b8e29d1c913f5378ca47 {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.RNA-Seq.genomic.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.genomic.gdc_realn.bam 7860687362 BAM genomic harmonized CPTAC3 53a53704-7666-4a21-a7a2-b403ed4024b5 2be2bdd2a2eee3b685800ce72405d41c {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor"} -C3L-01665.RNA-Seq.S1_L007_R1.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3552229163 FASTQ S1_L007_R1 unaligned CPTAC3 979f0067-3aaa-4ce5-82be-18c59b92d745 20fef6485dfa03166c23467d8681f872 {"aliquot_tag": "ALQ_425d5b1b", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01665.RNA-Seq.S1_L007_R2.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3910020008 FASTQ S1_L007_R2 unaligned CPTAC3 59769f43-2edb-4653-a37e-326fb6ebf5f4 017b62b2c5ea53ccc6801385a8fd8194 {"aliquot_tag": "ALQ_425d5b1b", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01665.RNA-Seq.S8_L008_R1.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 4406130660 FASTQ S8_L008_R1 unaligned CPTAC3 d2e0e613-b766-4a33-afd9-9b711e97ba5e 87e27cb24c698f77ec3621d1da97537f {"aliquot_tag": "ALQ_ef826f3a", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.RNA-Seq.S8_L008_R2.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4842367319 FASTQ S8_L008_R2 unaligned CPTAC3 0f866237-d0e1-4239-b0af-ffe14fa9c06c e004cabccf30ee1e6982966870d89fb8 {"aliquot_tag": "ALQ_ef826f3a", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.RNA-Seq.transcriptome.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.transcriptome.gdc_realn.bam 10824252346 BAM transcriptome harmonized CPTAC3 6cf98e30-a8da-4c7e-8ef1-74b52fc231f7 0834a7acd5a32add2688a6ed80bbb0bc {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.RNA-Seq.transcriptome.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.transcriptome.gdc_realn.bam 10135166468 BAM transcriptome harmonized CPTAC3 124be1dc-170b-43fd-929b-e7e40dc23282 28dcb680371d04d92cb8371ed192fa65 {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor"} -C3L-01665.WGS.A C3L-01665 CCRCC WGS tissue_normal CPT0104510006 CPT0104510006.WholeGenome.RP-1303.bam 59047137473 BAM aligned CPTAC3 ffd1877a-9571-41bd-b749-a8205538bc67 b1447e24274e097a134773c5240dd2d7 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.WGS.A.hg38 C3L-01665 CCRCC WGS tissue_normal CPT0104510006 c192eb5a-01f5-4795-a4dc-57cb22564607_wgs_gdc_realn.bam 86257749071 BAM harmonized CPTAC3 36f7e42f-807d-4005-afee-172278bb5369 57e63b2ffe896e43ef53bed95ba1844f {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.WGS.N C3L-01665 CCRCC WGS blood_normal CPT0105140002 CPT0105140002.WholeGenome.RP-1303.bam 69057605719 BAM aligned CPTAC3 def0a483-8bd3-4ef2-a744-bf79aebdc898 055024d716e5a5ca5787723a7f71635c {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01665.WGS.N.hg38 C3L-01665 CCRCC WGS blood_normal CPT0105140002 f33295b5-1e46-4afb-b768-3c61712548e0_wgs_gdc_realn.bam 100834153895 BAM harmonized CPTAC3 3a5bf9ec-f875-40ae-b887-d5449db41a21 7d26b99f87a7dbd34b142fd535290aac {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01665.WGS.T C3L-01665 CCRCC WGS tumor CPT0104500009 CPT0104500009.WholeGenome.RP-1303.bam 60568149548 BAM aligned CPTAC3 85a360d3-a835-435b-ad64-2370e07603c6 e583f929adbabf6b8c95a8a6bc749dd1 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor"} -C3L-01665.WGS.T.hg38 C3L-01665 CCRCC WGS tumor CPT0104500009 7c1b396d-0542-4277-b15d-852e7886f4f3_wgs_gdc_realn.bam 90587408380 BAM harmonized CPTAC3 5d037ebb-0e4c-4354-a6b1-91f55663dd3d 597a6e5df30e5e1780536277815e4866 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor"} -C3L-01665.WXS.A C3L-01665 CCRCC WXS tissue_normal CPT0104510006 CPT0104510006.WholeExome.RP-1303.bam 21291307658 BAM aligned CPTAC3 96d587b6-b209-441f-b786-89346419036c d697d84e018dde39f578b313a2ce1e96 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.WXS.A.hg38 C3L-01665 CCRCC WXS tissue_normal CPT0104510006 c192eb5a-01f5-4795-a4dc-57cb22564607_wxs_gdc_realn.bam 28571748041 BAM harmonized CPTAC3 acfcd1f7-fb4d-4ce0-a12e-2d73ac5b33a9 6e3693723228437d4584e7b49515d57c {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01665.WXS.N C3L-01665 CCRCC WXS blood_normal CPT0105140002 CPT0105140002.WholeExome.RP-1303.bam 31012727015 BAM aligned CPTAC3 bc7f9a9b-4e74-4c23-a635-20f744e86463 1b494929dd386f761a836fa902ed8e17 {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01665.WXS.N.hg38 C3L-01665 CCRCC WXS blood_normal CPT0105140002 f33295b5-1e46-4afb-b768-3c61712548e0_wxs_gdc_realn.bam 42166935318 BAM harmonized CPTAC3 3a2d1689-a42e-478c-b5e7-f282dfa2f372 1c347ab73b5dfa9a20c31095583f58e5 {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal"} -C3L-01665.WXS.T C3L-01665 CCRCC WXS tumor CPT0104500009 CPT0104500009.WholeExome.RP-1303.bam 40408339915 BAM aligned CPTAC3 61902771-e805-41d4-bf8d-cb9f18d7d177 07b3319adaea533cd32efb8692c03293 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor"} -C3L-01665.WXS.T.hg38 C3L-01665 CCRCC WXS tumor CPT0104500009 7c1b396d-0542-4277-b15d-852e7886f4f3_wxs_gdc_realn.bam 54750168929 BAM harmonized CPTAC3 374d2a79-d433-48f5-9a5c-312e0619f875 afc26a3f2ff58c4ce8b44aa5fcd1d2c0 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor"} -C3L-01668.MethArray.Green.T C3L-01668 UCEC Methylation_Array tumor CPT0186560011 203561450025_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 047926fe-5b32-42f0-90c0-ea6fa3386665 1a212332e18251146ab60a276938a275 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor"} -C3L-01668.MethArray.Red.T C3L-01668 UCEC Methylation_Array tumor CPT0186560011 203561450025_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 6ed44b55-cf51-4653-a85e-89f797f8c78e 285531f7cd5ec3985886aec25e230437 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor"} -C3L-01668.miRNA-Seq.S2_L001_R1.T C3L-01668 UCEC miRNA-Seq tumor CPT0186560014 190508_UNC31-K00269_0215_BH7FYKBBXY_CGATGT_S2_L001_R1_001.unaln.bam 250990473 BAM S2_L001_R1 unaligned CPTAC3 e6381bfe-9317-445f-befb-7e2e5ec57e38 08e0142a2cacf92fd2c887f53cfaa917 {"aliquot_tag": "ALQ_7e72f44a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01668.miRNA-Seq.T.hg38 C3L-01668 UCEC miRNA-Seq tumor CPT0186560014 0b06ee24-8939-49a3-bbc2-cb464fe9bd96_mirnaseq_gdc_realn.bam 277832460 BAM harmonized CPTAC3 2b4af245-9385-4ae8-ae41-7f4cb28ed119 983e5c23457aba0e8e8d2800b6f563fb {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor"} -C3L-01668.RNA-Seq.chimeric.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.chimeric.gdc_realn.bam 36969658 BAM chimeric harmonized CPTAC3 1f87d162-cffc-4d4a-bd6f-83a9e8fd8002 9204f075f4cbf3740c67b5e6611d7fca {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor"} -C3L-01668.RNA-Seq.genomic.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.genomic.gdc_realn.bam 9138462326 BAM genomic harmonized CPTAC3 ce1f34cf-fa01-403b-afad-7049a089ed6d 47637f278261c69b709005be1589d211 {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor"} -C3L-01668.RNA-Seq.S12_L004_R1.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R1_001.fastq.gz 4529984647 FASTQ S12_L004_R1 unaligned CPTAC3 625ba623-69d4-478f-b201-9c67d3b25697 9c188eaed1b09d15824a51330af22db7 {"aliquot_tag": "ALQ_7e72f44a", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01668.RNA-Seq.S12_L004_R2.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R2_001.fastq.gz 4574905222 FASTQ S12_L004_R2 unaligned CPTAC3 1a33f8a2-429e-4d65-b7a5-b02cff29c0c3 4d30b7df5f062cdc692ad321b137f69f {"aliquot_tag": "ALQ_7e72f44a", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01668.RNA-Seq.transcriptome.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.transcriptome.gdc_realn.bam 9695303637 BAM transcriptome harmonized CPTAC3 b1bf11f6-4546-4609-a651-9d9fcd2ce3ef a4a3adf8bb6825ab2c2ddf4af588d4e3 {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor"} -C3L-01668.WGS.N C3L-01668 UCEC WGS blood_normal CPT0186620002 CPT0186620002.WholeGenome.RP-1303.bam 67417683678 BAM aligned CPTAC3 62958839-ad4e-44c4-a193-a8cb95a12a69 d729e1031afa672dab79bb47c031236d {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal"} -C3L-01668.WGS.N.hg38 C3L-01668 UCEC WGS blood_normal CPT0186620002 d15a2060-bdd7-4fab-84f1-fb50911e1a3c_wgs_gdc_realn.bam 99214437041 BAM harmonized CPTAC3 76afbc49-f923-4965-b75d-e9b490e41ad8 83eab647ccb2fa560acbfe2f818e7dc0 {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal"} -C3L-01668.WGS.T C3L-01668 UCEC WGS tumor CPT0186560011 CPT0186560011.WholeGenome.RP-1303.bam 72799004197 BAM aligned CPTAC3 8adee160-175a-44ec-9e2b-604920cefc4e f3942d20dce9200b63e6c359e101bc8a {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor"} -C3L-01668.WGS.T.hg38 C3L-01668 UCEC WGS tumor CPT0186560011 d3fde119-0b54-4bc9-b3f4-77e6b213f325_wgs_gdc_realn.bam 105216593317 BAM harmonized CPTAC3 d7f180a3-c67a-46da-8a7f-8a9028048c24 16bc2b1a5aacb7160d29b6e67a8f4c55 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor"} -C3L-01668.WXS.N C3L-01668 UCEC WXS blood_normal CPT0186620002 CPT0186620002.WholeExome.RP-1303.bam 20513283858 BAM aligned CPTAC3 acce20ef-33a9-49c8-9d3a-08f363a67d7e 54cda6128c25195ff651e30f016e5194 {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal"} -C3L-01668.WXS.N.hg38 C3L-01668 UCEC WXS blood_normal CPT0186620002 d15a2060-bdd7-4fab-84f1-fb50911e1a3c_wxs_gdc_realn.bam 27974290875 BAM harmonized CPTAC3 4c645c19-7e12-4aed-bf4c-840dc1068395 6dd7a08e9653235baecc1655be0f907d {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal"} -C3L-01668.WXS.T C3L-01668 UCEC WXS tumor CPT0186560011 CPT0186560011.WholeExome.RP-1303.bam 19009740486 BAM aligned CPTAC3 1873cb5f-8fad-475d-b18f-ec3d5632c304 d278f90df418ff505dd45c926423a52d {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor"} -C3L-01668.WXS.T.hg38 C3L-01668 UCEC WXS tumor CPT0186560011 d3fde119-0b54-4bc9-b3f4-77e6b213f325_wxs_gdc_realn.bam 27331543974 BAM harmonized CPTAC3 b9c1dff2-b3f3-448f-9985-0616ba2075cc 0476e948909867a0697fbb4213ce26f3 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor"} -C3L-01672.MethArray.Green.T C3L-01672 UCEC Methylation_Array tumor CPT0172460011 203561620016_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 acd61c9e-fbbc-42d9-a088-e4f28a52f9ef c9a4998d8f6898496bfe4ba3f7d2955f {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor"} -C3L-01672.MethArray.Red.T C3L-01672 UCEC Methylation_Array tumor CPT0172460011 203561620016_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9ec1aa0a-29da-4f92-8ba6-27cf54c584e8 bcaa1cbbdf20eb092af92713352425fb {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor"} -C3L-01672.miRNA-Seq.S42_L004_R1.T C3L-01672 UCEC miRNA-Seq tumor CPT0172460018 190508_UNC31-K00269_0215_BH7FYKBBXY_TAATCG_S42_L004_R1_001.unaln.bam 165180931 BAM S42_L004_R1 unaligned CPTAC3 bed92036-e146-4596-b122-0c2e725aac10 3a677e52539630c8bc070b267a7b2005 {"aliquot_tag": "ALQ_91f75d7b", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01672.miRNA-Seq.T.hg38 C3L-01672 UCEC miRNA-Seq tumor CPT0172460018 2ee1eb34-2ef8-4278-88b0-bf4e04c1513d_mirnaseq_gdc_realn.bam 184568905 BAM harmonized CPTAC3 bb426802-86d8-408e-b8da-9d11f7bca3d8 fa2fcfa28e2009d739e2681e921daefd {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.chimeric.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.chimeric.gdc_realn.bam 41765908 BAM chimeric harmonized CPTAC3 9e7cda70-b121-439e-abbb-8154d3103ab8 6a672623897c5d667c992c70b35ec3e0 {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.chimeric.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.chimeric.gdc_realn.bam 441475212 BAM chimeric harmonized CPTAC3 c008fee3-eb7e-41e9-aba7-1f8a07406eb6 a8af066521e780e01be02115fcdb827b {"aliquot_tag": "ALQ_cc50fd2e", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.genomic.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.genomic.gdc_realn.bam 9862605327 BAM genomic harmonized CPTAC3 b43262d9-ed69-49dc-ac16-3c9791f58c5c 9207e294a6920174e078ed95358feca3 {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.genomic.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.genomic.gdc_realn.bam 18179364563 BAM genomic harmonized CPTAC3 462604c2-2ff0-4f23-ac85-dae0197a0a42 1998f149a0549b2abb85cf14bde8e369 {"aliquot_tag": "ALQ_cc50fd2e", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.S11_L003_R1.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R1_001.fastq.gz 4779290704 FASTQ S11_L003_R1 unaligned CPTAC3 91c8e4fd-03c5-467b-84b9-adb60fa651ac 3998b157177ea6ca48a73aa53c227b55 {"aliquot_tag": "ALQ_91f75d7b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.S11_L003_R2.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R2_001.fastq.gz 5485309573 FASTQ S11_L003_R2 unaligned CPTAC3 12e50250-2bdb-4be7-a42d-ae3973e5629c 8cc3d2c6045aba21aa82b70a29ac4d99 {"aliquot_tag": "ALQ_91f75d7b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.S26_R1.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R1_001.fastq.gz 12293193288 FASTQ S26_R1 unaligned CPTAC3 4546350d-fe05-418e-888d-aff3b8305d7d 7e33734613eab2f9163783430c47f80b {"aliquot_tag": "ALQ_cc50fd2e", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.S26_R2.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R2_001.fastq.gz 12669018946 FASTQ S26_R2 unaligned CPTAC3 ca0fa8b1-fbe0-467b-a655-de2b70930144 41f28187ab0e1cefc74756ac5719a971 {"aliquot_tag": "ALQ_cc50fd2e", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.transcriptome.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.transcriptome.gdc_realn.bam 10661343612 BAM transcriptome harmonized CPTAC3 5a3abcc3-b1ff-4d7f-8ab2-34fcd005404d e458f864bf48154d1e473a6dd08795dd {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor"} -C3L-01672.RNA-Seq.transcriptome.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.transcriptome.gdc_realn.bam 11615774782 BAM transcriptome harmonized CPTAC3 7a6afaf6-da92-411c-8cd1-14efbbc34e38 35a60b92778d0fd614378a70c8104862 {"aliquot_tag": "ALQ_cc50fd2e", "gdc_sample_type": "Primary Tumor"} -C3L-01672.WGS.N C3L-01672 UCEC WGS blood_normal CPT0172490002 CPT0172490002.WholeGenome.RP-1303.bam 57878542213 BAM aligned CPTAC3 e76157ff-6a65-4ce6-8840-a110d5e4df0b 876b509b7e0f62f3810d546eadde7bd3 {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01672.WGS.N.hg38 C3L-01672 UCEC WGS blood_normal CPT0172490002 e9e086cf-40bd-436f-8233-c40dbcfe1fd2_wgs_gdc_realn.bam 86518489674 BAM harmonized CPTAC3 3b4d126d-5e06-4439-96d0-2c5deeef44b0 959ac4b4ec06336ba1f0052b06a0b3d4 {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01672.WGS.T C3L-01672 UCEC WGS tumor CPT0172460011 CPT0172460011.WholeGenome.RP-1303.bam 83051373450 BAM aligned CPTAC3 e9f81954-c511-4028-8603-704c8afcbee8 da634277ee702b15e61b5646655557fa {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor"} -C3L-01672.WGS.T.hg38 C3L-01672 UCEC WGS tumor CPT0172460011 7b548498-e34a-4e42-9213-f4b61db549a5_wgs_gdc_realn.bam 123141626976 BAM harmonized CPTAC3 dce38f35-63ef-446a-8a20-c2cd1257433b 5d0806c287a24ded5b587454160bd4c9 {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor"} -C3L-01672.WXS.N C3L-01672 UCEC WXS blood_normal CPT0172490002 CPT0172490002.WholeExome.RP-1303.bam 22665652407 BAM aligned CPTAC3 e0983366-a4fd-4d79-95cd-e2e5bb6cdbb6 326951655b6f0a9ad83e18166d7074a9 {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01672.WXS.N.hg38 C3L-01672 UCEC WXS blood_normal CPT0172490002 e9e086cf-40bd-436f-8233-c40dbcfe1fd2_wxs_gdc_realn.bam 30998837574 BAM harmonized CPTAC3 e3a987c7-7077-45c4-9623-8c56f9041710 8b0d597056cd37c8109341e82e1c802b {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal"} -C3L-01672.WXS.T C3L-01672 UCEC WXS tumor CPT0172460011 CPT0172460011.WholeExome.RP-1303.bam 28681981291 BAM aligned CPTAC3 c3053f1c-f936-4b92-a899-d54448c74d73 07eece8dac2ad38ce0b1dcc69da4b32f {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor"} -C3L-01672.WXS.T.hg38 C3L-01672 UCEC WXS tumor CPT0172460011 7b548498-e34a-4e42-9213-f4b61db549a5_wxs_gdc_realn.bam 40485656584 BAM harmonized CPTAC3 2f5cb639-8ded-4dd3-99c1-663ced095941 7882ead2f1333017d4fcefbd0cc7b8ee {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor"} -C3L-01676.MethArray.Green.A C3L-01676 CCRCC Methylation_Array tissue_normal CPT0172660007 204373100050_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 357a3467-4eb6-4495-aa4d-ba91edcc1c92 1440733daf9ec7b0920f1119e2fa4894 {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.MethArray.Green.T C3L-01676 CCRCC Methylation_Array tumor CPT0172630006 203219650127_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e195a0fb-b5d9-4183-a063-d13de18ce558 97d0425ee23e94b2f6283d094497699d {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor"} -C3L-01676.MethArray.Red.A C3L-01676 CCRCC Methylation_Array tissue_normal CPT0172660007 204373100050_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 01605887-bb1f-4a3b-a8c1-6fb31e0e2e67 d60ac0dd2c29fa3ab27bde802cd621ec {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.MethArray.Red.T C3L-01676 CCRCC Methylation_Array tumor CPT0172630006 203219650127_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 8f1b595d-59ed-4c8e-bcb7-1366a9402d79 d7a2710efd53beef0ffd386248e5a1be {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor"} -C3L-01676.miRNA-Seq.A.hg38 C3L-01676 CCRCC miRNA-Seq tissue_normal CPT0172660010 daaa4cda-d850-47f9-a8e0-54d9e81ff020_mirnaseq_gdc_realn.bam 282084382 BAM harmonized CPTAC3 a2a51cc6-0f87-4fc8-87a5-58d04d0788d5 5df1c93fbc310dac3c1bf2d8d8682b50 {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.miRNA-Seq.S28_L005_R1.T C3L-01676 CCRCC miRNA-Seq tumor CPT0172630009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L005_R1_001.unaln.bam 202871219 BAM S28_L005_R1 unaligned CPTAC3 6eb54d5a-5a1a-4314-b4fa-a1fbd9e39429 b8ef9fc5a144ec4d40161ce2ef8655cd {"aliquot_tag": "ALQ_7ac372d7", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01676.miRNA-Seq.S7_L004_R1.A C3L-01676 CCRCC miRNA-Seq tissue_normal CPT0172660010 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L004_R1_001.unaln.bam 259140680 BAM S7_L004_R1 unaligned CPTAC3 028e96a2-13d6-4fca-9119-9105481662b0 17af6c6fe26a139b4302e0ff91f1b487 {"aliquot_tag": "ALQ_d2e47442", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.miRNA-Seq.T.hg38 C3L-01676 CCRCC miRNA-Seq tumor CPT0172630009 73de7a28-0678-4948-b6be-909118a3b666_mirnaseq_gdc_realn.bam 220750088 BAM harmonized CPTAC3 4782b961-a23e-4541-8762-666b4872b20c 327024361f52951577abcac86f2acc99 {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor"} -C3L-01676.RNA-Seq.chimeric.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.chimeric.gdc_realn.bam 31848678 BAM chimeric harmonized CPTAC3 bbf9210e-7f08-41a8-9c23-fa694aff216c 5c4001aaaaba85c3b5fd14992f0d8c9c {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.RNA-Seq.chimeric.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.chimeric.gdc_realn.bam 36771874 BAM chimeric harmonized CPTAC3 7ff20692-055c-493b-8ba2-1354c097c27c 048b2f81e7846c7fdd847252da7fd2a1 {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor"} -C3L-01676.RNA-Seq.genomic.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.genomic.gdc_realn.bam 8794901139 BAM genomic harmonized CPTAC3 f2e23202-7def-42c4-9bbc-5e5932d81380 f3bf8e5d28823760bd6dfffc9984febb {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.RNA-Seq.genomic.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.genomic.gdc_realn.bam 8153520511 BAM genomic harmonized CPTAC3 6594eadc-77b4-4244-b63c-7bec55ae47d0 2728edb918e57ca6abfde276e65c66ef {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor"} -C3L-01676.RNA-Seq.S19_L005_R1.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3941964007 FASTQ S19_L005_R1 unaligned CPTAC3 ec31cd8d-5b2f-4750-9054-397c28aeb765 f9494c39b9a9f8bc56fda3b50217ec32 {"aliquot_tag": "ALQ_7ac372d7", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01676.RNA-Seq.S19_L005_R2.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3669981710 FASTQ S19_L005_R2 unaligned CPTAC3 b553063c-7214-4005-a709-2b5b654793a2 02fa289642cc62cf2bfbfdec44d02767 {"aliquot_tag": "ALQ_7ac372d7", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01676.RNA-Seq.S6_L008_R1.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3725556577 FASTQ S6_L008_R1 unaligned CPTAC3 f077dc87-d26e-4e05-b323-58693f76fafa c4d68d4dc44a93bad65f995e92ee43a9 {"aliquot_tag": "ALQ_d2e47442", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.RNA-Seq.S6_L008_R2.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 3900855135 FASTQ S6_L008_R2 unaligned CPTAC3 de87a9ab-7626-4dae-bb03-68f10e68c9a2 3d3f07687efb9cb3dba9e2a5340fbb39 {"aliquot_tag": "ALQ_d2e47442", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.RNA-Seq.transcriptome.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.transcriptome.gdc_realn.bam 9326080858 BAM transcriptome harmonized CPTAC3 ff953ec8-486c-435c-b2a8-deb138b0be53 397e0f6027b50645e1aa2d5237411cb2 {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.RNA-Seq.transcriptome.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.transcriptome.gdc_realn.bam 10044575740 BAM transcriptome harmonized CPTAC3 a6368e4a-e72d-4b28-9a7b-52c650e2c253 303b249efc715eeead54f85efa9079ad {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor"} -C3L-01676.WGS.A C3L-01676 CCRCC WGS tissue_normal CPT0172660007 CPT0172660007.WholeGenome.RP-1303.bam 59331331744 BAM aligned CPTAC3 fd41199f-ac5c-4870-8265-aa02ac939968 88183a12e913b27d30e8ddb5b53b0e68 {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.WGS.A.hg38 C3L-01676 CCRCC WGS tissue_normal CPT0172660007 4a485c4d-1de8-4da1-b84c-5baaba33a343_wgs_gdc_realn.bam 87258780249 BAM harmonized CPTAC3 4b24dd59-07d0-4fdf-8191-b4dca33e4ca2 9879a0de371bcaafe73bb2425ba2f33a {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.WGS.N C3L-01676 CCRCC WGS blood_normal CPT0172830002 CPT0172830002.WholeGenome.RP-1303.bam 55472008185 BAM aligned CPTAC3 25158770-d2a5-48cf-bcdd-a97f3785437c 41dd701c2fcc3b3d3a06f71b2232dd3a {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01676.WGS.N.hg38 C3L-01676 CCRCC WGS blood_normal CPT0172830002 89a7075e-37f1-4cc5-b8cc-5bb619b9f4f0_wgs_gdc_realn.bam 82233989049 BAM harmonized CPTAC3 2cd2799a-39c1-48c1-82b9-d04200b0474f 7565756b9707b4f3449adbfe3b37dc67 {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01676.WGS.T C3L-01676 CCRCC WGS tumor CPT0172630006 CPT0172630006.WholeGenome.RP-1303.bam 55433955838 BAM aligned CPTAC3 07a9940a-82dc-4137-adfb-a11873ac8bca 1ff97b342694c07a62468a82f18716be {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor"} -C3L-01676.WGS.T.hg38 C3L-01676 CCRCC WGS tumor CPT0172630006 d6aa10d7-ba56-4740-a789-8ce3ee1cffda_wgs_gdc_realn.bam 80963500060 BAM harmonized CPTAC3 980761ef-3600-4972-aa79-f44fba3572e8 5e1aedc9c606cd3d220aae69696ef7a4 {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor"} -C3L-01676.WXS.A C3L-01676 CCRCC WXS tissue_normal CPT0172660007 CPT0172660007.WholeExome.RP-1303.bam 23882318238 BAM aligned CPTAC3 0632dd77-5899-49b7-b2db-873bb33191a9 e4c246dacd9acf6f7bfa05aea6bf2eef {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.WXS.A.hg38 C3L-01676 CCRCC WXS tissue_normal CPT0172660007 4a485c4d-1de8-4da1-b84c-5baaba33a343_wxs_gdc_realn.bam 33033743972 BAM harmonized CPTAC3 274f04e2-6949-4971-9fb7-6b260e349ddb 142ae98d4e53b745b80ad92d04e1930c {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01676.WXS.N C3L-01676 CCRCC WXS blood_normal CPT0172830002 CPT0172830002.WholeExome.RP-1303.bam 25765743850 BAM aligned CPTAC3 c5fbf334-229b-4d10-a720-1401414101dc aece49602c326425d40bad43da278652 {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01676.WXS.N.hg38 C3L-01676 CCRCC WXS blood_normal CPT0172830002 89a7075e-37f1-4cc5-b8cc-5bb619b9f4f0_wxs_gdc_realn.bam 36025813820 BAM harmonized CPTAC3 ff8b64f8-a1ff-4ae1-8944-6137db291d24 6306401149074c9f9aea8dd884c27183 {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01676.WXS.T C3L-01676 CCRCC WXS tumor CPT0172630006 CPT0172630006.WholeExome.RP-1303.bam 31229545360 BAM aligned CPTAC3 ae93e9fd-d7de-45ac-900a-d42813254f9b 8423947828d1d6063c8ce742bba9978e {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor"} -C3L-01676.WXS.T.hg38 C3L-01676 CCRCC WXS tumor CPT0172630006 d6aa10d7-ba56-4740-a789-8ce3ee1cffda_wxs_gdc_realn.bam 44029815081 BAM harmonized CPTAC3 d1c60a98-e2c6-4e70-9012-55de7a7280cb 4adeb87c804b22d0c261ba9908063ff5 {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor"} -C3L-01681.MethArray.Green.A C3L-01681 CCRCC Methylation_Array tissue_normal CPT0110770006 204930640041_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a8bd52b4-f853-4648-af06-2da110a127ce 0530d9092af9f32a2f54f5967b5f571c {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.MethArray.Green.T C3L-01681 CCRCC Methylation_Array tumor CPT0110740008 203219640068_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8626f87c-2a54-4ee0-85ca-730077bbaf2e 7b94bc7e7acb43bffb1a785da5515be2 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor"} -C3L-01681.MethArray.Red.A C3L-01681 CCRCC Methylation_Array tissue_normal CPT0110770006 204930640041_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 add9de3b-b9da-421b-8aca-3ee237f82b90 21595fa2b3f12f8ee4dad0418581da34 {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.MethArray.Red.T C3L-01681 CCRCC Methylation_Array tumor CPT0110740008 203219640068_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 7c79b027-d3d7-4f90-a550-85ab0d7ec985 705f5517d00b2c48a648be1fca40d5cc {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor"} -C3L-01681.miRNA-Seq.A.hg38 C3L-01681 CCRCC miRNA-Seq tissue_normal CPT0110770009 b6a5e4c3-9c33-409f-a91c-f09927496e46_mirnaseq_gdc_realn.bam 195520436 BAM harmonized CPTAC3 0a8c457e-3037-44a8-8deb-0053142eb6aa 0bb8e2317b204799636712c0a1b39735 {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.miRNA-Seq.S10_L002_R1.A C3L-01681 CCRCC miRNA-Seq tissue_normal CPT0110770009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L002_R1_001.unaln.bam 178999558 BAM S10_L002_R1 unaligned CPTAC3 96903ed9-a6e8-4a4e-9eb2-e1a72f721c9d 64929867675a03f870f92c582800b7bb {"aliquot_tag": "ALQ_15ef1f1c", "sample": "S10", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.miRNA-Seq.S21_L002_R1.T C3L-01681 CCRCC miRNA-Seq tumor CPT0110740005 190108_UNC31-K00269_0176_AHYGLVBBXX_GTTTCG_S21_L002_R1_001.unaln.bam 224730095 BAM S21_L002_R1 unaligned CPTAC3 2d07cf93-56cf-44bb-9fa2-fcb91f47c33c 3bb1cbaf414e79e43438302ea534e019 {"aliquot_tag": "ALQ_5bf929e7", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01681.miRNA-Seq.T.hg38 C3L-01681 CCRCC miRNA-Seq tumor CPT0110740005 188a62e5-7279-462f-9183-b6e33c7dcb5a_mirnaseq_gdc_realn.bam 246011848 BAM harmonized CPTAC3 5d808e77-eddd-4b96-9a99-348e480ca12d 91d11c4768f1bd0467963a84fc051ec9 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor"} -C3L-01681.RNA-Seq.chimeric.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.chimeric.gdc_realn.bam 168371847 BAM chimeric harmonized CPTAC3 f7864bb8-5a9e-4a18-bff5-916c786002df 548fdcc8fb7bdc809844cfef5974e827 {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.RNA-Seq.chimeric.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.chimeric.gdc_realn.bam 25362326 BAM chimeric harmonized CPTAC3 ebaaec90-cd75-4769-b277-241279624b11 81d455149b3d540c715c5a21d633cdb5 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor"} -C3L-01681.RNA-Seq.genomic.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.genomic.gdc_realn.bam 7574739653 BAM genomic harmonized CPTAC3 ab20fbbc-cd8c-4424-bfc4-5273727b3390 39061d9454532644e51bf5b903ead04e {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.RNA-Seq.genomic.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.genomic.gdc_realn.bam 7248781651 BAM genomic harmonized CPTAC3 523e6d0f-0240-4ec3-bf42-bf621e3befdf 4e1d02ab8d0f806a911e050274272272 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor"} -C3L-01681.RNA-Seq.S19_L005_R1.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R1_001.fastq.gz 3216346993 FASTQ S19_L005_R1 unaligned CPTAC3 909a8bf9-8afb-4658-818e-9249d1572e7b 3f327224030881f28b2472b09ac5488a {"aliquot_tag": "ALQ_5bf929e7", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01681.RNA-Seq.S19_L005_R2.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3622505559 FASTQ S19_L005_R2 unaligned CPTAC3 d4531d2e-9dc0-4119-8684-94045307a733 cc0aa22f508f06d7f472a1ce3f5662a6 {"aliquot_tag": "ALQ_5bf929e7", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01681.RNA-Seq.S3_L005_R1.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R1_001.fastq.gz 3297944588 FASTQ S3_L005_R1 unaligned CPTAC3 608c1ec2-9e22-4426-81d3-3c984c3364e6 9179aaeb0559171f131684b6cb25dbc8 {"aliquot_tag": "ALQ_15ef1f1c", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.RNA-Seq.S3_L005_R2.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R2_001.fastq.gz 3684169657 FASTQ S3_L005_R2 unaligned CPTAC3 94364a31-4b41-48af-9fe0-ae8ca7d2317b 691473d3773d5fb1f8b9b8cf2062319a {"aliquot_tag": "ALQ_15ef1f1c", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.RNA-Seq.transcriptome.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.transcriptome.gdc_realn.bam 7935237069 BAM transcriptome harmonized CPTAC3 35014a73-3b04-429e-8fed-d3714f2e9af5 1112cb963674fe59d178b6bdc7827e37 {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.RNA-Seq.transcriptome.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.transcriptome.gdc_realn.bam 9047242911 BAM transcriptome harmonized CPTAC3 f55f5d96-f96d-407a-be31-0e8a2173f3fe 34cf6b607a1a5576d3b48e1ed46955b9 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor"} -C3L-01681.WGS.A C3L-01681 CCRCC WGS tissue_normal CPT0110770006 CPT0110770006.WholeGenome.RP-1303.bam 59572690162 BAM aligned CPTAC3 9c5dd328-de58-4ca0-9970-9a6ce3367e7a 39b093fe38f25e41ba6c5c8276de737c {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.WGS.A.hg38 C3L-01681 CCRCC WGS tissue_normal CPT0110770006 04fdbf6b-d048-4d4f-b92e-6705a35015da_wgs_gdc_realn.bam 85641191076 BAM harmonized CPTAC3 9bd6246f-f65e-48ff-a227-be1fe643a524 3af39fe0d1c711800652d39a44d37820 {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.WGS.N C3L-01681 CCRCC WGS blood_normal CPT0112350002 CPT0112350002.WholeGenome.RP-1303.bam 58863039638 BAM aligned CPTAC3 504b1fec-584c-485f-ba4e-ab06c9942a7c 796a790d991d51db9e1fb4fe53e18870 {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01681.WGS.N.hg38 C3L-01681 CCRCC WGS blood_normal CPT0112350002 e7ad9a46-6978-4799-b0cb-f3a3e04f4fd5_wgs_gdc_realn.bam 87050578120 BAM harmonized CPTAC3 ccd12dad-e18b-4520-a3a6-19efce292540 f33ca20df4957047f8376fc30283026a {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01681.WGS.T C3L-01681 CCRCC WGS tumor CPT0110740008 CPT0110740008.WholeGenome.RP-1303.bam 58289105076 BAM aligned CPTAC3 d36bc2a0-8cf9-426a-83a9-cc919871c709 4cc7610f6aa6cdcf2fdf170ce6020319 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor"} -C3L-01681.WGS.T.hg38 C3L-01681 CCRCC WGS tumor CPT0110740008 6071c180-edd1-48e7-b575-e1c5620dae9b_wgs_gdc_realn.bam 85002553513 BAM harmonized CPTAC3 9e7cfa9f-553f-4d13-ae77-652f29acb9a7 404ba3e082e5690667d8cdcecdf0f5c0 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor"} -C3L-01681.WXS.A C3L-01681 CCRCC WXS tissue_normal CPT0110770006 CPT0110770006.WholeExome.RP-1303.bam 24015608569 BAM aligned CPTAC3 f0ddce34-3bb5-4c7e-885a-071232ffdac5 8520603d6de665b4912a5604484e3c0b {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.WXS.A.hg38 C3L-01681 CCRCC WXS tissue_normal CPT0110770006 04fdbf6b-d048-4d4f-b92e-6705a35015da_wxs_gdc_realn.bam 32586461739 BAM harmonized CPTAC3 0e701273-2615-4ea5-b312-55091ed83814 a4196b6717f9a4d370f84db9c18ad7d3 {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01681.WXS.N C3L-01681 CCRCC WXS blood_normal CPT0112350002 CPT0112350002.WholeExome.RP-1303.bam 20221851968 BAM aligned CPTAC3 8bcc288e-6b54-42bb-91f6-d646db30c9bd e90e1769ec2c708479423aabed203957 {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01681.WXS.N.hg38 C3L-01681 CCRCC WXS blood_normal CPT0112350002 e7ad9a46-6978-4799-b0cb-f3a3e04f4fd5_wxs_gdc_realn.bam 27592992346 BAM harmonized CPTAC3 0525db50-8a29-4d93-b3d3-636df7427c6c eb232122321dd8054c20f7aa2bd35740 {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01681.WXS.T C3L-01681 CCRCC WXS tumor CPT0110740008 CPT0110740008.WholeExome.RP-1303.bam 26986109206 BAM aligned CPTAC3 347619bd-a665-488a-bbd5-ce4623a4fef3 dfd47261b3e404e3d921ad0586e5ce5e {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor"} -C3L-01681.WXS.T.hg38 C3L-01681 CCRCC WXS tumor CPT0110740008 6071c180-edd1-48e7-b575-e1c5620dae9b_wxs_gdc_realn.bam 36777716326 BAM harmonized CPTAC3 75a28e10-ea97-49d0-9474-c957ad022d9b af0ba4767f1ccebde88baba7eafba3f1 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor"} -C3L-01682.MethArray.Green.A C3L-01682 LUAD Methylation_Array tissue_normal CPT0110890009 203028200101_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 fb219fb9-bb96-4ca6-84a2-4aa2dd176b33 ab000fa962be01b6cf49831631f4908c {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.MethArray.Green.T C3L-01682 LUAD Methylation_Array tumor CPT0110860010 202234380058_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e2470b4c-a8c8-4bd7-bd00-3b4869774f0c 1643e802b455849f948491ff687b4d35 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor"} -C3L-01682.MethArray.Red.A C3L-01682 LUAD Methylation_Array tissue_normal CPT0110890009 203028200101_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 56aa2fb9-3e6a-4ba8-8a86-cac04001b58b a7a781ac8ed8c1c2b6bf0d9822ac8203 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.MethArray.Red.T C3L-01682 LUAD Methylation_Array tumor CPT0110860010 202234380058_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 8d6e719e-9507-4990-ba2f-7a701d53e392 2e65ab69c01def9e2338c6d854161345 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor"} -C3L-01682.miRNA-Seq.A.hg38 C3L-01682 LUAD miRNA-Seq tissue_normal CPT0110890006 2a031798-bc6d-4e44-9aa8-efd024562a4b_mirnaseq_gdc_realn.bam 239023129 BAM harmonized CPTAC3 13cb8753-b43d-425f-82fa-363c20b06d8c ee9318051f7497ae87ac7dda5619994f {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.miRNA-Seq.S33_L005_R1.A C3L-01682 LUAD miRNA-Seq tissue_normal CPT0110890006 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L005_R1_001.unaln.bam 214639483 BAM S33_L005_R1 unaligned CPTAC3 c3e04e60-e7aa-4c4b-b427-ea874cd4e9c7 a9524799061fc369081cc7444efe41b6 {"aliquot_tag": "ALQ_cb360e39", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.miRNA-Seq.S42_L003_R1.T C3L-01682 LUAD miRNA-Seq tumor CPT0110860007 181119_UNC31-K00269_0165_AH27WCBBXY_GTCCGC_S42_L003_R1_001.unaln.bam 188391884 BAM S42_L003_R1 unaligned CPTAC3 d3d103b3-2591-45c6-a129-25032ab67762 afb45d63762c9074ca1d9de7222af3a6 {"aliquot_tag": "ALQ_3e61a97e", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01682.miRNA-Seq.T.hg38 C3L-01682 LUAD miRNA-Seq tumor CPT0110860007 8d034691-fdd2-42ea-8cd1-f057530d414f_mirnaseq_gdc_realn.bam 206196176 BAM harmonized CPTAC3 40ae77c1-b150-468e-bf05-8bdf72cff661 3997d306e39eb9b942db34805d35d8c8 {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor"} -C3L-01682.RNA-Seq.chimeric.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.chimeric.gdc_realn.bam 129043099 BAM chimeric harmonized CPTAC3 98341ec1-460d-4c92-8ebb-30416caf4422 6ee13a34559033a338def0b9dbe3e073 {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.RNA-Seq.chimeric.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.chimeric.gdc_realn.bam 146727319 BAM chimeric harmonized CPTAC3 b0e6cd52-6c61-49dc-8255-69acf215c65e db89d4fd8cfd0f16dadf408b605005f0 {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor"} -C3L-01682.RNA-Seq.genomic.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.genomic.gdc_realn.bam 7968347815 BAM genomic harmonized CPTAC3 feb6007f-ef8e-4541-bef4-f0104ff30a55 209026fbace34f5740c11581e3f0df67 {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.RNA-Seq.genomic.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.genomic.gdc_realn.bam 8356835607 BAM genomic harmonized CPTAC3 b663e8c2-9d45-4d60-b311-1ef89b7f09d4 06e5c8af21f5f0d0b79882378c1572d8 {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor"} -C3L-01682.RNA-Seq.S17_L005_R1.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 3717744196 FASTQ S17_L005_R1 unaligned CPTAC3 283b1517-8776-49a9-a806-0d20a241039f 7e24c4bcddb090cd48c91288f356359e {"aliquot_tag": "ALQ_3e61a97e", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01682.RNA-Seq.S17_L005_R2.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 3960909708 FASTQ S17_L005_R2 unaligned CPTAC3 d9c52ed7-9493-4e3e-a21e-3dba392b3c57 332cc0678499a4ad7de5c7bfd3708beb {"aliquot_tag": "ALQ_3e61a97e", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01682.RNA-Seq.S1_L003_R1.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R1_001.fastq.gz 3788560229 FASTQ S1_L003_R1 unaligned CPTAC3 9334bab4-7c2b-4cf2-a4c7-d93abab614d7 d6c22de22a59d537c44a0a4d8f80464e {"aliquot_tag": "ALQ_cb360e39", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.RNA-Seq.S1_L003_R2.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R2_001.fastq.gz 4123819563 FASTQ S1_L003_R2 unaligned CPTAC3 678fb586-7d73-45c1-9180-691619007710 b0e34508c61d1768354cafc5e1931d3e {"aliquot_tag": "ALQ_cb360e39", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.RNA-Seq.transcriptome.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.transcriptome.gdc_realn.bam 9378602137 BAM transcriptome harmonized CPTAC3 388a1231-a9fc-4671-b19f-d5804810cb9f d4cdd53620263ece88da27a35f10067c {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.RNA-Seq.transcriptome.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.transcriptome.gdc_realn.bam 9515046692 BAM transcriptome harmonized CPTAC3 072ad95e-7852-4536-bc85-2c39f2ed4f9d ddfdbe55069f67d69ed990e454c316dd {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor"} -C3L-01682.WGS.A C3L-01682 LUAD WGS tissue_normal CPT0110890009 CPT0110890009.WholeGenome.RP-1303.bam 53869757710 BAM aligned CPTAC3 fb716f55-ca56-4082-bfa3-3818372ee252 02ce72e78439ca2d6ca1a2f578a1f9d0 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.WGS.A.hg38 C3L-01682 LUAD WGS tissue_normal CPT0110890009 6ac1e42c-c406-45e7-8b33-b63cd943a9e5_wgs_gdc_realn.bam 79217335350 BAM harmonized CPTAC3 79e2c183-5547-4f3c-b003-10cc84e361f9 fc8a93680e7b9e0d82f2c1fae6de57c0 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.WGS.N C3L-01682 LUAD WGS blood_normal CPT0112370002 CPT0112370002.WholeGenome.RP-1303.bam 61560934962 BAM aligned CPTAC3 7ad390dd-8a7b-4679-bdd8-45fe84201b78 62f7cda6b438d80cb9b81f9aae9a07e8 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01682.WGS.N.hg38 C3L-01682 LUAD WGS blood_normal CPT0112370002 48e1f0b6-8ec2-4192-a798-6d9f6f8ab5b2_wgs_gdc_realn.bam 90215753913 BAM harmonized CPTAC3 019fc47f-94a4-4b17-bfe1-3a84f91efb19 135d1627e2c78b1c34f40e5afcf0d108 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01682.WGS.T C3L-01682 LUAD WGS tumor CPT0110860010 CPT0110860010.WholeGenome.RP-1303.bam 53859947246 BAM aligned CPTAC3 d2b75177-b40b-4381-bd45-180f6985cf0f bfa2f81b68aea330563859cec08cebe3 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor"} -C3L-01682.WGS.T.hg38 C3L-01682 LUAD WGS tumor CPT0110860010 6ce2608b-d1a9-4ad5-b588-b5b746f9307e_wgs_gdc_realn.bam 78347615892 BAM harmonized CPTAC3 495e68f7-8222-4674-9bcb-62b52f116b52 ebd217a095e8b930ac32e9504d037eae {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor"} -C3L-01682.WXS.A C3L-01682 LUAD WXS tissue_normal CPT0110890009 CPT0110890009.WholeExome.RP-1303.bam 31950439102 BAM aligned CPTAC3 f9c480c8-1d0c-4995-9778-ce90388fa084 d428dbc12ad5391396e15bdc0b8bb5f6 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.WXS.A.hg38 C3L-01682 LUAD WXS tissue_normal CPT0110890009 6ac1e42c-c406-45e7-8b33-b63cd943a9e5_wxs_gdc_realn.bam 44139925893 BAM harmonized CPTAC3 a7137df5-0292-44b3-bab4-759718de311e 7d135727612f4eaa24715b154f58ffc6 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01682.WXS.N C3L-01682 LUAD WXS blood_normal CPT0112370002 CPT0112370002.WholeExome.RP-1303.bam 38544868015 BAM aligned CPTAC3 0712cbb8-c37a-4e92-8309-66e62838d4f5 4922892ce3eb240a55ec3e244f6f5855 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01682.WXS.N.hg38 C3L-01682 LUAD WXS blood_normal CPT0112370002 48e1f0b6-8ec2-4192-a798-6d9f6f8ab5b2_wxs_gdc_realn.bam 52634128339 BAM harmonized CPTAC3 53086b68-387b-472c-a6d6-518f32328be7 4b0c9ad94335a9b89f82d00cef0dc222 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-01682.WXS.T C3L-01682 LUAD WXS tumor CPT0110860010 CPT0110860010.WholeExome.RP-1303.bam 39888154698 BAM aligned CPTAC3 eee1da64-ae5d-49ad-b7fe-279a424c1222 6eedf83bef526e04506d58adcafcd705 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor"} -C3L-01682.WXS.T.hg38 C3L-01682 LUAD WXS tumor CPT0110860010 6ce2608b-d1a9-4ad5-b588-b5b746f9307e_wxs_gdc_realn.bam 53997971540 BAM harmonized CPTAC3 0d294e19-0b54-4b90-b951-b4517c8c6270 0c60317fa268ade14a906364ae3a9b09 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor"} -C3L-01683.MethArray.Green.A C3L-01683 LUAD Methylation_Array tissue_normal CPT0111590009 203027390105_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5e2ed43a-0af9-4b76-8dba-29489f7df007 c79ce508c83fa17d6c0f78108407def8 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.MethArray.Green.T C3L-01683 LUAD Methylation_Array tumor CPT0110980010 202234370119_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 85c30e11-d9f0-421b-bdd6-7390cd27bd5c 716c13a8131df8d9aaef7b0f73f6f165 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01683.MethArray.Red.A C3L-01683 LUAD Methylation_Array tissue_normal CPT0111590009 203027390105_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 23ede73f-c93f-41c2-92a7-064e08d196b1 70a5e43eba003cee8bff621ffd1df585 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.MethArray.Red.T C3L-01683 LUAD Methylation_Array tumor CPT0110980010 202234370119_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 ef87fae7-a6c9-4281-9f4f-600aa37b0042 95836b2028ee83ebb23c5b1cc0782853 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01683.miRNA-Seq.A.hg38 C3L-01683 LUAD miRNA-Seq tissue_normal CPT0111590006 752396fa-1755-4613-b234-4ef886a0635c_mirnaseq_gdc_realn.bam 248139481 BAM harmonized CPTAC3 3447fbff-e1d8-4350-95db-6a3f29035d45 76bd778e7a8a3a01a6fd174cbc0bfbdb {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.miRNA-Seq.S19_L007_R1.A C3L-01683 LUAD miRNA-Seq tissue_normal CPT0111590006 181108_UNC31-K00269_0162_AH255GBBXY_TACAGC_S19_L007_R1_001.unaln.bam 223682067 BAM S19_L007_R1 unaligned CPTAC3 0560df4c-1cd1-40e7-80b6-db4e5a8b4f3f 9b2e3fd134400ff049b1c3d409fa4af1 {"aliquot_tag": "ALQ_d1df1653", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.miRNA-Seq.S43_L003_R1.T C3L-01683 LUAD miRNA-Seq tumor CPT0110980007 181119_UNC31-K00269_0165_AH27WCBBXY_GTGAAA_S43_L003_R1_001.unaln.bam 227936822 BAM S43_L003_R1 unaligned CPTAC3 89c501f8-d22e-44c7-968a-0d05c2ea72d5 4d9e5ecc7ce00f2f6fc2f17eac9a046b {"aliquot_tag": "ALQ_4a0dc4ba", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01683.miRNA-Seq.T.hg38 C3L-01683 LUAD miRNA-Seq tumor CPT0110980007 68464e96-7107-406d-a855-112871d0b621_mirnaseq_gdc_realn.bam 247744610 BAM harmonized CPTAC3 256b3937-bad2-4d41-8d5f-12645155a1ac 4a613dbc1f9a6d997cde9020d0eb90d8 {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor"} -C3L-01683.RNA-Seq.chimeric.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.chimeric.gdc_realn.bam 78533877 BAM chimeric harmonized CPTAC3 c7a6f0fe-c7af-4c2d-b059-65b975e2fa8b c82d203c31084704232a7e37d93e2611 {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.RNA-Seq.chimeric.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.chimeric.gdc_realn.bam 89356086 BAM chimeric harmonized CPTAC3 68e66c3b-989e-4d02-8aac-02632aa1178e 5cabe2a78de27429165df2820188b6fe {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor"} -C3L-01683.RNA-Seq.genomic.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.genomic.gdc_realn.bam 9116261795 BAM genomic harmonized CPTAC3 7da7a8a9-e817-42d7-8ff5-b709164c336c 0166b8928793added1a7814f7f21f441 {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.RNA-Seq.genomic.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.genomic.gdc_realn.bam 10026209133 BAM genomic harmonized CPTAC3 5ec371ad-e9b2-4ba9-a14d-c0d8f3ee765d 293829018d56eb3e0e2d56e9f4a6f005 {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor"} -C3L-01683.RNA-Seq.S16_L005_R1.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R1_001.fastq.gz 4185079045 FASTQ S16_L005_R1 unaligned CPTAC3 8ae50b60-0799-4883-9569-f4cca6b21954 f51b87dc113969a9095c3eaf8dfd963e {"aliquot_tag": "ALQ_4a0dc4ba", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01683.RNA-Seq.S16_L005_R2.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4637712849 FASTQ S16_L005_R2 unaligned CPTAC3 cefddaae-c3db-4a31-925a-32c6dc095613 550d2f1011ee4dbb71d37fb725cf3c00 {"aliquot_tag": "ALQ_4a0dc4ba", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01683.RNA-Seq.S3_L001_R1.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4215965437 FASTQ S3_L001_R1 unaligned CPTAC3 7747f420-f998-412b-b1d4-cdd41c2d2b87 8b5944aa42f885febf2ef1c50d355316 {"aliquot_tag": "ALQ_d1df1653", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.RNA-Seq.S3_L001_R2.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4713960213 FASTQ S3_L001_R2 unaligned CPTAC3 f797dd82-4b0f-4bac-b00b-e03ef2ecbec9 efbe3761f3fd232510b87d92a46c974e {"aliquot_tag": "ALQ_d1df1653", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.RNA-Seq.transcriptome.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.transcriptome.gdc_realn.bam 10419663043 BAM transcriptome harmonized CPTAC3 f5a8d8fc-96b1-4c24-a73f-5c420357bb88 c00548c49fc5fa69ea3e812379cc7f33 {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.RNA-Seq.transcriptome.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.transcriptome.gdc_realn.bam 10160365080 BAM transcriptome harmonized CPTAC3 bddff0d4-d93d-49bf-907f-405fef141ea1 cae68a62ceda2b30e03a81ea1585f3a5 {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor"} -C3L-01683.Targeted.T C3L-01683 LUAD Targeted_Sequencing tumor CPT0110980010 CPT0110980010.CustomSelection.RP-1303.PDO-18786.bam 6328057921 BAM aligned CPTAC3 32e32b84-b915-48f1-9b3c-7c34f27c3644 22616d8aba00b738e44d121620ed8823 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01683.Targeted.T.hg38 C3L-01683 LUAD Targeted_Sequencing tumor CPT0110980010 aaf33d60-8d89-4373-9f8e-1514cf2bf2ec_targetedsequencing_gdc_realn.bam 8776211007 BAM harmonized CPTAC3 6ce8de38-0e11-48d7-9c2d-1c5f4ab39c47 12bcd9f9975e556e6e9827f30c19395e {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01683.WGS.A C3L-01683 LUAD WGS tissue_normal CPT0111590009 CPT0111590009.WholeGenome.RP-1303.bam 62288927899 BAM aligned CPTAC3 b158f4bc-197a-481c-9520-a4aca3f30a83 e7df43b9b44ca031e2194c7be35eb623 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.WGS.A.hg38 C3L-01683 LUAD WGS tissue_normal CPT0111590009 361abfae-63f8-4950-94d6-d9301022b9d9_wgs_gdc_realn.bam 91346505851 BAM harmonized CPTAC3 70279bd0-28f5-4353-adf4-745d958ff8ad c92958dbaeeaf317fa8b603e64623766 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.WGS.N C3L-01683 LUAD WGS blood_normal CPT0112390002 CPT0112390002.WholeGenome.RP-1303.bam 58402661655 BAM aligned CPTAC3 6429d570-adcb-47f4-afe1-572a90ec4484 89494c1c5ade795b9fe828bbabb3a5a2 {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal"} -C3L-01683.WGS.N.hg38 C3L-01683 LUAD WGS blood_normal CPT0112390002 4b0c9eb2-41c6-4dee-8f50-05493e5cae42_wgs_gdc_realn.bam 85536536289 BAM harmonized CPTAC3 da75beb8-878b-472e-a0bb-86b06f1c468b 689ad8f0bdf464a6b911f7487589640c {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal"} -C3L-01683.WGS.T C3L-01683 LUAD WGS tumor CPT0110980010 CPT0110980010.WholeGenome.RP-1303.bam 51773085909 BAM aligned CPTAC3 1f09ba6c-8d4f-49a3-973f-3cf25690999d 0de0cae8026b0a04bd55eaecfefb51cc {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01683.WGS.T.hg38 C3L-01683 LUAD WGS tumor CPT0110980010 aaf33d60-8d89-4373-9f8e-1514cf2bf2ec_wgs_gdc_realn.bam 77053495470 BAM harmonized CPTAC3 a9598aa7-bcca-4dde-910f-5ee315ff16a4 ddf05d48bbb76756cb37baf715a3b774 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01683.WXS.A C3L-01683 LUAD WXS tissue_normal CPT0111590009 CPT0111590009.WholeExome.RP-1303.bam 25474473530 BAM aligned CPTAC3 6b4ad8ab-f8b4-4b5f-9d6a-cf89e087ec61 fb505b8ad3c2e402a2d93c5db12dfeb9 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.WXS.A.hg38 C3L-01683 LUAD WXS tissue_normal CPT0111590009 361abfae-63f8-4950-94d6-d9301022b9d9_wxs_gdc_realn.bam 34678766575 BAM harmonized CPTAC3 b6f8a71c-4c18-4802-86fa-63fd5dbb2d73 5dd09ca16273843b533d8242f48be803 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01683.WXS.N C3L-01683 LUAD WXS blood_normal CPT0112390002 CPT0112390002.WholeExome.RP-1303.bam 35992690582 BAM aligned CPTAC3 c0f1ac4e-c7ce-41aa-90c5-08ed263fecb9 16ac6af64bb08a8f117ea480e3038703 {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal"} -C3L-01683.WXS.N.hg38 C3L-01683 LUAD WXS blood_normal CPT0112390002 4b0c9eb2-41c6-4dee-8f50-05493e5cae42_wxs_gdc_realn.bam 49176119220 BAM harmonized CPTAC3 c794fbcc-e3c1-4bc7-b627-bd941df92fa2 36ef7056c55306296620f0c7d9860ab6 {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal"} -C3L-01683.WXS.T C3L-01683 LUAD WXS tumor CPT0110980010 CPT0110980010.WholeExome.RP-1303.bam 31019292341 BAM aligned CPTAC3 05714eed-81f0-48c4-9219-3dd152fad062 5e6687df85e57a30d45f9721e9e50dcc {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01683.WXS.T.hg38 C3L-01683 LUAD WXS tumor CPT0110980010 aaf33d60-8d89-4373-9f8e-1514cf2bf2ec_wxs_gdc_realn.bam 41752200762 BAM harmonized CPTAC3 921e71d0-4543-4669-b2bb-82b6039f5927 d9dfdef94a0a42c5b9494ef28d2d7c3a {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor"} -C3L-01687.ADD_7b25c879.MethArray.Green.T C3L-01687 PDA Methylation_Array tumor CPT0094630010 202234370091_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9bf7f925-8f47-492b-80a0-2e90cf68d773 063cbe0d1a3059ccd4f67f65c7e653e9 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01687.ADD_7b25c879.MethArray.Red.T C3L-01687 PDA Methylation_Array tumor CPT0094630010 202234370091_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 0cf7d962-68c5-4e53-98af-8e1c93ac7b31 9f36c9e3fcc613c8a15f1c5d44a96999 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01687.ADD_7b25c879.WGS.T C3L-01687 PDA WGS tumor CPT0094630010 CPT0094630010.WholeGenome.RP-1303.bam 64067472974 BAM aligned CPTAC3 4d66b8e3-e6bc-46cf-8270-63462a2fc99e ab5ebee495fe0ea6a39c768bb7a77169 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01687.ADD_7b25c879.WGS.T.hg38 C3L-01687 PDA WGS tumor CPT0094630010 c1d8b688-7c23-466a-8885-f6fa38811bac_wgs_gdc_realn.bam 95381576935 BAM harmonized CPTAC3 fb2c5c36-3522-435b-956e-5a141c175fa8 e3da622294804d05283b80b77461422c {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01687.ADD_7b25c879.WXS.T C3L-01687 PDA WXS tumor CPT0094630010 CPT0094630010.WholeExome.RP-1303.bam 43732761409 BAM aligned CPTAC3 777f06c3-5b2d-4fdc-bbff-e310b656485d 639ae4d9d142bd79fc7a5e021b907261 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01687.ADD_7b25c879.WXS.T.hg38 C3L-01687 PDA WXS tumor CPT0094630010 c1d8b688-7c23-466a-8885-f6fa38811bac_wxs_gdc_realn.bam 60376134555 BAM harmonized CPTAC3 f1631497-e49f-4e81-a80a-a79d521e3fdd d7ae3e411cd2cc8971aeb8bd92712301 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01687.miRNA-Seq.S7_L006_R1.T C3L-01687 PDA miRNA-Seq tumor CPT0094630007 180828_UNC32-K00270_0112_AHWTLNBBXX_ATGTCA_S7_L006_R1_001.unaln.bam 275072884 BAM S7_L006_R1 unaligned CPTAC3 5f576970-48a9-4e50-ae00-b0cb6ef0ed7a 458dc48f76cfc9446f72f0e83c6ed9ae {"aliquot_tag": "ALQ_fc5a6c9b", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01687.miRNA-Seq.T.hg38 C3L-01687 PDA miRNA-Seq tumor CPT0094630007 4f465a6a-7726-486b-9a47-0d9ba0f7054c_mirnaseq_gdc_realn.bam 306088175 BAM harmonized CPTAC3 8795eac6-d7ec-4d20-8ad2-363ff7f85087 a6a415c370ceafb5c1f6534628e84ba1 {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor"} -C3L-01687.RNA-Seq.chimeric.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.chimeric.gdc_realn.bam 33935122 BAM chimeric harmonized CPTAC3 ebd09d53-df7b-4356-a8c5-860525215a38 3f36b711f36fb96467903e5a1e22dba7 {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor"} -C3L-01687.RNA-Seq.genomic.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.genomic.gdc_realn.bam 8774793417 BAM genomic harmonized CPTAC3 0508ba6b-1018-4eeb-ab86-9c9e7b89dd32 9d5594f42142c427351abd59785e3e3e {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor"} -C3L-01687.RNA-Seq.S1_L007_R1.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3954237874 FASTQ S1_L007_R1 unaligned CPTAC3 9545cf4f-5b01-43a6-b003-ef20185af5e4 a9d5e104750661c71c0f822e525809b3 {"aliquot_tag": "ALQ_fc5a6c9b", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01687.RNA-Seq.S1_L007_R2.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R2_001.fastq.gz 4265724748 FASTQ S1_L007_R2 unaligned CPTAC3 bad2a3a3-78be-44a8-906a-1572ebf2422c 9fe6d12fa3f7d6f897dec2a8cf78a2da {"aliquot_tag": "ALQ_fc5a6c9b", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01687.RNA-Seq.transcriptome.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.transcriptome.gdc_realn.bam 10172760667 BAM transcriptome harmonized CPTAC3 f4ed9934-7403-4a56-a834-0a23dfedc6ef ff6f9caf637da6998f775fdf24436a3d {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor"} -C3L-01687.Targeted.T C3L-01687 PDA Targeted_Sequencing tumor CPT0094630010_1 CPT0094630010_1.CustomSelection.RP-1303.PDO-18786.bam 6042277368 BAM aligned CPTAC3 8b005314-53d4-4033-9b22-99bf08de8bb4 75ca37707163d3e3c567e55e92c9108a {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor"} -C3L-01687.Targeted.T.hg38 C3L-01687 PDA Targeted_Sequencing tumor CPT0094630010_1 8f41faed-4885-470d-999b-4d4944b7eb8b_targetedsequencing_gdc_realn.bam 8588382403 BAM harmonized CPTAC3 8f28ad35-3a3f-4234-9080-b4775bfe3600 2852a8eb6f87bfb5a201dcecc83ca9ac {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor"} -C3L-01687.WGS.N C3L-01687 PDA WGS blood_normal CPT0094670002 CPT0094670002.WholeGenome.RP-1303.bam 59918366925 BAM aligned CPTAC3 d59ddcea-7cbb-46c2-bb05-88a1b82da943 24f8e408bc7949d9c801d06083d68c43 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01687.WGS.N.hg38 C3L-01687 PDA WGS blood_normal CPT0094670002 e1a71e63-7248-4ca7-a7a5-be2a7c90de9f_wgs_gdc_realn.bam 90074313556 BAM harmonized CPTAC3 1f705ea1-bfc3-4ef4-9471-861e4105d2cd 4402f5504d60a5daea49fdc8708a9041 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01687.WXS.N C3L-01687 PDA WXS blood_normal CPT0094670002 CPT0094670002.WholeExome.RP-1303.bam 31470431551 BAM aligned CPTAC3 b72b4257-f1c5-4fdf-ac21-9e7311fb7cc7 f32cc526443e1fa820b4ada479dc73c7 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01687.WXS.N.hg38 C3L-01687 PDA WXS blood_normal CPT0094670002 e1a71e63-7248-4ca7-a7a5-be2a7c90de9f_wxs_gdc_realn.bam 43745579904 BAM harmonized CPTAC3 94700395-e6b7-424a-aefd-5004e6dd355d 3ab33096a30126a12f29227284a87009 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal"} -C3L-01687.WXS.T C3L-01687 PDA WXS tumor CPT0094630010_1 CPT0094630010_1.WholeExome.RP-1303.bam 66577887109 BAM aligned CPTAC3 3273a7e8-466f-44b2-aadb-1b6477c36066 0ea9ff414e792e92f2cc285ceda3989c {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor"} -C3L-01687.WXS.T.hg38 C3L-01687 PDA WXS tumor CPT0094630010_1 8f41faed-4885-470d-999b-4d4944b7eb8b_wxs_gdc_realn.bam 91626753914 BAM harmonized CPTAC3 eb0e7968-bb03-4b70-9b0f-75f724afd227 134e669f4ccad6d2f35e67e0cc2b4026 {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor"} -C3L-01689.ADD_259c7cc.MethArray.Green.T C3L-01689 PDA Methylation_Array tumor CPT0094740010 202234380062_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d5168e96-b2d1-4ddf-80ff-07e54c04c511 e6c78b55bc9c20a290b98a6877d688d4 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01689.ADD_259c7cc.MethArray.Red.T C3L-01689 PDA Methylation_Array tumor CPT0094740010 202234380062_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 4fe5994c-9ba5-41d2-8124-759aad6ad09e b6291088ac3acc3e58b66f296418ba05 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01689.ADD_259c7cc.WGS.T C3L-01689 PDA WGS tumor CPT0094740010 CPT0094740010.WholeGenome.RP-1303.bam 73456602702 BAM aligned CPTAC3 f8165680-b07f-4708-a3e8-e97af131b4fd 4e22dc94ef615a543c444b230ff26042 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01689.ADD_259c7cc.WGS.T.hg38 C3L-01689 PDA WGS tumor CPT0094740010 9c14f2c0-7b52-4168-8622-3dea77dc1c8c_wgs_gdc_realn.bam 108304178142 BAM harmonized CPTAC3 7e8efdd4-7fad-4e46-aa74-5e1bf4b2f149 07128dd863255b7f6ebb6577fbca80b3 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01689.ADD_259c7cc.WXS.T C3L-01689 PDA WXS tumor CPT0094740010 CPT0094740010.WholeExome.RP-1303.bam 35996325264 BAM aligned CPTAC3 e23087d7-1fd1-40d7-9480-d756b398de93 9c3384701d5052e7efbbcaa0abcc6dfc {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01689.ADD_259c7cc.WXS.T.hg38 C3L-01689 PDA WXS tumor CPT0094740010 9c14f2c0-7b52-4168-8622-3dea77dc1c8c_wxs_gdc_realn.bam 49728274691 BAM harmonized CPTAC3 fda1347e-80b9-4cac-ab47-d6625b0fed2f f12ef1dd33e48b7e63003d88ba70413d {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01689.MethArray.Green.A C3L-01689 PDA Methylation_Array tissue_normal CPT0094760006 203561450025_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8d6337ec-3e04-4302-9a12-46473942c8d4 2fa6749bc5f732aeae6fbf407099fab5 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.MethArray.Red.A C3L-01689 PDA Methylation_Array tissue_normal CPT0094760006 203561450025_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 6628ff3f-ced2-44ba-98f1-b97790950cd4 b68413f489ac78cd9f492c45b55ac121 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.miRNA-Seq.A.hg38 C3L-01689 PDA miRNA-Seq tissue_normal CPT0094760009 6020a21d-600e-483b-81f8-cfee57009e80_mirnaseq_gdc_realn.bam 227635769 BAM harmonized CPTAC3 cd0d1fb0-f328-4498-97d0-6c20795379ba b208ee543105575f2f24fad0b10be4b6 {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.miRNA-Seq.S22_L001_R1.A C3L-01689 PDA miRNA-Seq tissue_normal CPT0094760009 181108_UNC31-K00269_0162_AH255GBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 200019046 BAM S22_L001_R1 unaligned CPTAC3 7d72c29e-97f0-4518-9fc3-757049274b7f 2b465238eb477e928b10a6cdc43c7be1 {"aliquot_tag": "ALQ_185e1d49", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.miRNA-Seq.S8_L006_R1.T C3L-01689 PDA miRNA-Seq tumor CPT0094740007 180828_UNC32-K00270_0112_AHWTLNBBXX_CCGTCC_S8_L006_R1_001.unaln.bam 267704212 BAM S8_L006_R1 unaligned CPTAC3 8a60cbfb-3cfe-4d46-a90e-e13bf0c6dae5 56342d5cce78fa7f1c3808cc42d86d0b {"aliquot_tag": "ALQ_8526632e", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01689.miRNA-Seq.T.hg38 C3L-01689 PDA miRNA-Seq tumor CPT0094740007 293a311e-ac24-4afa-a7ad-d5e0b261bd70_mirnaseq_gdc_realn.bam 296343268 BAM harmonized CPTAC3 60a8ea10-52e3-46af-a979-5b312f6752c8 8bc79d0cbda06565a6b4f756f784853f {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor"} -C3L-01689.RNA-Seq.chimeric.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.chimeric.gdc_realn.bam 56173937 BAM chimeric harmonized CPTAC3 7ba26246-9eda-48ed-9395-1b48443b55e5 b4b83b0514141826dd6092ae5c4664b3 {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.RNA-Seq.chimeric.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.chimeric.gdc_realn.bam 51591775 BAM chimeric harmonized CPTAC3 e02c7c12-09ec-472c-9edc-51771507af9a 5f8671cf8473f3da766d88afbf348db6 {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor"} -C3L-01689.RNA-Seq.genomic.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.genomic.gdc_realn.bam 12241655876 BAM genomic harmonized CPTAC3 7851b824-ed1c-4d77-95a1-2b723fbd3cdb cf81ffc8ebfba4afd3dc1b8f34ab087b {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.RNA-Seq.genomic.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.genomic.gdc_realn.bam 9680847491 BAM genomic harmonized CPTAC3 9f10c714-81a4-4ea3-8310-85770c84720f 34a40554e2945c6d1affabad56deaa74 {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor"} -C3L-01689.RNA-Seq.S1_L008_R1.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R1_001.fastq.gz 4885591906 FASTQ S1_L008_R1 unaligned CPTAC3 2e215877-8133-4956-9365-afcc86b208e6 e842830b60c4b842aa66e50b9376427d {"aliquot_tag": "ALQ_185e1d49", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.RNA-Seq.S1_L008_R2.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R2_001.fastq.gz 5133168728 FASTQ S1_L008_R2 unaligned CPTAC3 dcb43335-d796-4abf-b95e-0519563eba77 e67e79c73b1d85f37c5f6bc9c0823ef3 {"aliquot_tag": "ALQ_185e1d49", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.RNA-Seq.S4_L007_R1.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R1_001.fastq.gz 4423527277 FASTQ S4_L007_R1 unaligned CPTAC3 c6fa2be8-70e6-4a3b-82a4-911ee2a935c7 54499d4be416ef66178ba2c775e33d78 {"aliquot_tag": "ALQ_8526632e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01689.RNA-Seq.S4_L007_R2.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R2_001.fastq.gz 4577352236 FASTQ S4_L007_R2 unaligned CPTAC3 314c5ece-ac0c-43cb-9cb9-5074c5ddd17f f87675967cee23ae83412a17ed448dfb {"aliquot_tag": "ALQ_8526632e", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01689.RNA-Seq.transcriptome.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.transcriptome.gdc_realn.bam 10923965553 BAM transcriptome harmonized CPTAC3 870a6366-9bcd-4d0e-82b9-fe01900087c1 bf2205782952edcd55e0682a6c43fcb6 {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.RNA-Seq.transcriptome.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.transcriptome.gdc_realn.bam 11964216053 BAM transcriptome harmonized CPTAC3 069c257d-c29a-416b-9705-79d1b31b8946 3cfd0cf16d54a2ac0ac903c9df01569b {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor"} -C3L-01689.Targeted.T C3L-01689 PDA Targeted_Sequencing tumor CPT0094740010_1 CPT0094740010_1.CustomSelection.RP-1303.PDO-18786.bam 4439399359 BAM aligned CPTAC3 70c010c1-3ea8-428e-9e88-afb515b48312 03ab59b65576a0388510c0682f97ecee {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor"} -C3L-01689.Targeted.T.hg38 C3L-01689 PDA Targeted_Sequencing tumor CPT0094740010_1 70a35058-7366-48fe-9d20-279e5067a318_targetedsequencing_gdc_realn.bam 6083786730 BAM harmonized CPTAC3 605039a3-c9c3-405f-ae49-211caaf8cfc0 26d9285b247ef641f46b2baa99bf941a {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor"} -C3L-01689.WGS.A C3L-01689 PDA WGS tissue_normal CPT0094760006 CPT0094760006.WholeGenome.RP-1303.bam 63001515275 BAM aligned CPTAC3 a1898ab0-2eb1-4f32-ab8e-079c0537e1d0 da3adc3f889dcd4ebc30d7c8ad866407 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.WGS.A.hg38 C3L-01689 PDA WGS tissue_normal CPT0094760006 956c67e8-45fd-4182-adde-a1f05cbfc38d_wgs_gdc_realn.bam 93123693968 BAM harmonized CPTAC3 5436e6cd-254a-4c6c-9774-9e794fb1104e 14e8281e22d52e02f9bb3ede6f979fb2 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.WGS.N C3L-01689 PDA WGS blood_normal CPT0094770002 CPT0094770002.WholeGenome.RP-1303.bam 60299258990 BAM aligned CPTAC3 2af53dea-8364-4253-8427-c9441ee4f662 f84cb711fb665d0097e096ace27f2778 {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal"} -C3L-01689.WGS.N.hg38 C3L-01689 PDA WGS blood_normal CPT0094770002 46e8ae07-a169-4f32-b287-765baebdb791_wgs_gdc_realn.bam 88927334534 BAM harmonized CPTAC3 e39d2edb-7a85-49c1-bafd-9ed460b73941 b90739ced10f36da759036a4ee28218e {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal"} -C3L-01689.WXS.A C3L-01689 PDA WXS tissue_normal CPT0094760006 CPT0094760006.WholeExome.RP-1303.bam 25392784181 BAM aligned CPTAC3 bffe1464-9611-4005-bfc2-f4f0b0976050 4613499ab6af9ffc87e5bab04dd64d36 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.WXS.A.hg38 C3L-01689 PDA WXS tissue_normal CPT0094760006 956c67e8-45fd-4182-adde-a1f05cbfc38d_wxs_gdc_realn.bam 34356297034 BAM harmonized CPTAC3 ae0b772c-cb89-4b3e-b335-42118c516745 c1318deeb864d1c18c7e8ba4fbce23b9 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01689.WXS.N C3L-01689 PDA WXS blood_normal CPT0094770002 CPT0094770002.WholeExome.RP-1303.bam 46245118461 BAM aligned CPTAC3 f01c91c8-f14b-433e-8085-acdcedc77e32 b28f0157e05e40d39bf36312df385bba {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal"} -C3L-01689.WXS.N.hg38 C3L-01689 PDA WXS blood_normal CPT0094770002 46e8ae07-a169-4f32-b287-765baebdb791_wxs_gdc_realn.bam 64223755589 BAM harmonized CPTAC3 642cddf7-2f67-4d03-9635-06c554458f3c fa235e4d741a8bb10d3a65b5f8af2caf {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal"} -C3L-01689.WXS.T C3L-01689 PDA WXS tumor CPT0094740010_1 CPT0094740010_1.WholeExome.RP-1303.bam 63058697539 BAM aligned CPTAC3 00bf0247-9154-461a-ba35-264fb2cb6687 0b346609719287308266ff0043185737 {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor"} -C3L-01689.WXS.T.hg38 C3L-01689 PDA WXS tumor CPT0094740010_1 70a35058-7366-48fe-9d20-279e5067a318_wxs_gdc_realn.bam 86331664244 BAM harmonized CPTAC3 84b33e50-751c-41df-a998-e13d2d37eed0 1cb7b06936f48ed62bea4726d3ce80a7 {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor"} -C3L-01694.MethArray.Green.Tpb C3L-01694 AML Methylation_Array tumor_peripheral_blood CPT0340290002 205987770157_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 48156c23-8317-497f-a605-f8a66b6c22bc d9757abe7b3856c763fcaf91becb14f9 {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.MethArray.Red.Tpb C3L-01694 AML Methylation_Array tumor_peripheral_blood CPT0340290002 205987770157_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 dbffa38d-f416-45c3-9131-abedc39db0e9 696f71e78308dfa0a99cf160d51f8f5f {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.miRNA-Seq.S2_L001_R1.Tpb C3L-01694 AML miRNA-Seq tumor_peripheral_blood CPT0340300002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATCACG_S2_L001_R1_001.unaln.bam 189361792 BAM S2_L001_R1 unaligned CPTAC3 2155728d-fbac-4451-9b0b-107fa7725bb6 ab8f08c58a583b408187ad638697e25d {"aliquot_tag": "ALQ_cd9a7e70", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.miRNA-Seq.Tpb.hg38 C3L-01694 AML miRNA-Seq tumor_peripheral_blood CPT0340300002 8d58eaa9-17bb-49a0-a318-79716ba9e98f_mirnaseq_gdc_realn.bam 208032669 BAM harmonized CPTAC3 87984535-3a20-458a-a4d0-64320baac44a 6a601eeace0214fa8f305da9ca11f8a8 {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.RNA-Seq.chimeric.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.chimeric.gdc_realn.bam 768880379 BAM chimeric harmonized CPTAC3 0944b400-af0f-4325-844b-cf3428029bf6 48ff1836d4fa88d9c00a87a5c82167e5 {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.RNA-Seq.genomic.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.genomic.gdc_realn.bam 7955895641 BAM genomic harmonized CPTAC3 02e9515d-6f20-4bff-a425-f93ec92c05c8 f982bc482c750aac19707d3317cf34ce {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.RNA-Seq.S25_L007_R1.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R1_001.fastq.gz 3641677214 FASTQ S25_L007_R1 unaligned CPTAC3 c23e84a2-04e9-43f2-985b-066d931b4eb6 9c80e939fd70eda7d92249e404905283 {"aliquot_tag": "ALQ_cd9a7e70", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.RNA-Seq.S25_L007_R2.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R2_001.fastq.gz 3955993600 FASTQ S25_L007_R2 unaligned CPTAC3 9495c32c-577f-4f2d-b673-9a76a4830300 8f3928807d30f4e34f3c5c3aa09818e8 {"aliquot_tag": "ALQ_cd9a7e70", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.RNA-Seq.transcriptome.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.transcriptome.gdc_realn.bam 5977978782 BAM transcriptome harmonized CPTAC3 e899a5f8-a05a-4649-af17-a515e6707883 58ab4b032c5659eab627a89a462f66eb {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.WGS.Nbc C3L-01694 AML WGS buccal_normal CPT0340260002 CPT0340260002.WholeGenome.RP-2158.bam 45058029150 BAM aligned CPTAC3 d23ef466-36f2-485c-8ca0-a5c8ac78628e a324d7b30f0532a3bd55f840fe7caa86 {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01694.WGS.Nbc.hg38 C3L-01694 AML WGS buccal_normal CPT0340260002 5d684f4c-80fc-44b7-926a-af49366523b2_wgs_gdc_realn.bam 136284225494 BAM harmonized CPTAC3 f0e9d729-028a-44d1-938a-8c48e13b96da 8cef655714b2ca92c8f7c8276f347a0d {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01694.WGS.Tpb C3L-01694 AML WGS tumor_peripheral_blood CPT0340290002 CPT0340290002.WholeGenome.RP-2158.bam 45406211217 BAM aligned CPTAC3 fd0bf4c3-3cdd-466e-881b-892b1f699a21 6be1481d176cd14b000b8d46be88ded7 {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.WGS.Tpb.hg38 C3L-01694 AML WGS tumor_peripheral_blood CPT0340290002 6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wgs_gdc_realn.bam 138048227737 BAM harmonized CPTAC3 98a43f31-aa70-4a90-aad4-4f12a5fad7ab 1793e87c5204e5f42dc7d24818cbf6b8 {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.WXS.Nbc C3L-01694 AML WXS buccal_normal CPT0340260002 CPT0340260002.WholeExome.RP-1303.bam 26013305775 BAM aligned CPTAC3 573d421a-41ab-4cea-a4b7-867f77741f5f 8d2b1d5cc72d4c848557457a6d70fc53 {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01694.WXS.Nbc.hg38 C3L-01694 AML WXS buccal_normal CPT0340260002 5d684f4c-80fc-44b7-926a-af49366523b2_wxs_gdc_realn.bam 35293704480 BAM harmonized CPTAC3 07fdceb1-5120-4aa7-b3ff-6f3e17d6fa7f 578de5efc0c76e55f2a7e3e50d0dc88e {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01694.WXS.Tpb C3L-01694 AML WXS tumor_peripheral_blood CPT0340290002 CPT0340290002.WholeExome.RP-1303.bam 31286388274 BAM aligned CPTAC3 c56f92f5-a1de-4bd8-a3f6-eeb898485791 38835ff793931fea3c5bbf45665ab71a {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01694.WXS.Tpb.hg38 C3L-01694 AML WXS tumor_peripheral_blood CPT0340290002 6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wxs_gdc_realn.bam 43163559785 BAM harmonized CPTAC3 236a0476-77cc-4842-b611-7d8ae76256db d0e980372f3d5e9506b37d35126e5a6b {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-01696.MethArray.Green.Tbm C3L-01696 AML Methylation_Array tumor_bone_marrow CPT0166290002 203561620054_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 090922bd-5325-4c89-9a7c-3b5fac7b9ca9 93eeadd0c007c600927a318eeb2d19ec {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.MethArray.Red.Tbm C3L-01696 AML Methylation_Array tumor_bone_marrow CPT0166290002 203561620054_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 409f54a9-1c4c-4fb5-b1d1-923d91aa7a6a a71dc0d86bd67b27f4a4f400b7bf34dc {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.miRNA-Seq.S24_L002_R1.Tbm C3L-01696 AML miRNA-Seq tumor_bone_marrow CPT0166320002 190508_UNC31-K00269_0215_BH7FYKBBXY_GGTAGC_S24_L002_R1_001.unaln.bam 145264302 BAM S24_L002_R1 unaligned CPTAC3 c16d36d4-f969-441d-b156-abe0c1479113 bd20c2533cc6389772efecc1a214f1f3 {"aliquot_tag": "ALQ_b85937d1", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.miRNA-Seq.Tbm.hg38 C3L-01696 AML miRNA-Seq tumor_bone_marrow CPT0166320002 a4cc8781-7dc6-44ba-b92e-cc5b45c46036_mirnaseq_gdc_realn.bam 159904342 BAM harmonized CPTAC3 2c8a855a-94b5-462d-846a-fa90dbe4478b b36ee77505072204afbe8a7d1a6a8903 {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.RNA-Seq.chimeric.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.chimeric.gdc_realn.bam 32661277 BAM chimeric harmonized CPTAC3 c15dd4fe-c5f2-48a8-b116-cf1a0e10d00c df30cdd26d0d4382845983dd185fc9fd {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.RNA-Seq.genomic.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.genomic.gdc_realn.bam 8651452145 BAM genomic harmonized CPTAC3 53abe101-df2d-4ec6-8b55-8a6ded923d48 b44588024015e5e4d5eb3be601e7cae6 {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.RNA-Seq.S42_L007_R1.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R1_001.fastq.gz 4068452902 FASTQ S42_L007_R1 unaligned CPTAC3 96152e05-9a90-41d0-8aad-96fcd8a9abad 769e93bf91b3afcf3bf9e09dfc33e139 {"aliquot_tag": "ALQ_b85937d1", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.RNA-Seq.S42_L007_R2.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R2_001.fastq.gz 4695883551 FASTQ S42_L007_R2 unaligned CPTAC3 52f743ca-17e2-4e87-8e66-69f9224c4139 a69be6ef52b83a21f5f9b8c793d176a6 {"aliquot_tag": "ALQ_b85937d1", "sample": "S42", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.RNA-Seq.transcriptome.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.transcriptome.gdc_realn.bam 10137569179 BAM transcriptome harmonized CPTAC3 38d0ace6-95fb-489a-9d93-eb5450ce6f7d ef53d104d6cbed36b7651e20bc6c0a7f {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003_1 CPT0166350003_1.WholeGenome.RP-1303.bam 69838458599 BAM aligned CPTAC3 a4410206-057d-44ce-9819-37f992dfbdfb 7250d270ad5940fcedf44e80eac90df6 {"aliquot_tag": "ALQ_c9dfeeef", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003 CPT0166350003.WholeGenome.RP-1303.bam 21981937874 BAM aligned CPTAC3 de97474c-7074-43bd-a1f8-e98800f27ada dca8f62c04ec10e9985a6ef1fe3cc710 {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01696.WGS.Nbc.hg38 C3L-01696 AML WGS buccal_normal CPT0166350003_1 062dc65b-0cfc-4f1d-b5f4-64bff4bbc805_wgs_gdc_realn.bam 101206605126 BAM harmonized CPTAC3 75f30131-c76d-41f4-aeca-63d39aa3215b 0479455432fb8e7bec43c5651e775fa3 {"aliquot_tag": "ALQ_c9dfeeef", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01696.WGS.Nbc.hg38 C3L-01696 AML WGS buccal_normal CPT0166350003 a1ab108e-f673-4cce-862e-77fa87d4a4f5_wgs_gdc_realn.bam 30140254960 BAM harmonized CPTAC3 19666272-672e-45f8-98e1-10baefb2e231 80ff1d5bae4c11a6f21909f953dfded1 {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01696.WGS.Tbm C3L-01696 AML WGS tumor_bone_marrow CPT0166290002 CPT0166290002.WholeGenome.RP-1303.bam 84446246342 BAM aligned CPTAC3 7c30eb6a-4f4c-40fa-8565-27f50456a49c c9e6d9ca88f0cf06605b35a2e5cf0b05 {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.WGS.Tbm.hg38 C3L-01696 AML WGS tumor_bone_marrow CPT0166290002 eeae1365-1d8d-4397-b2ba-bf7aae4883ae_wgs_gdc_realn.bam 123011651132 BAM harmonized CPTAC3 30772786-a9c8-40f0-b5c8-1853d6bd440b 86dd95f30662cdf418e4e48bf27fbf5a {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.WXS.Nbc C3L-01696 AML WXS buccal_normal CPT0166350003 CPT0166350003.WholeExome.RP-1303.bam 21981937940 BAM aligned CPTAC3 8faf9d47-a91d-42ec-835f-d32440ce8abd 7823453d1082dd3ae3d5cf43a587aca5 {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01696.WXS.Nbc.hg38 C3L-01696 AML WXS buccal_normal CPT0166350003 a1ab108e-f673-4cce-862e-77fa87d4a4f5_wxs_gdc_realn.bam 30206011598 BAM harmonized CPTAC3 291df1e9-343e-40f1-8819-22284ab7b9ab a1ab573aac1c9c4fe7359c010956514b {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01696.WXS.Tbm C3L-01696 AML WXS tumor_bone_marrow CPT0166290002 CPT0166290002.WholeExome.RP-1303.bam 25455818959 BAM aligned CPTAC3 313ee02e-41af-44b9-9d1a-59f4a81af55f 8c5d437e116af81a3abb5d4d330c54f0 {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01696.WXS.Tbm.hg38 C3L-01696 AML WXS tumor_bone_marrow CPT0166290002 eeae1365-1d8d-4397-b2ba-bf7aae4883ae_wxs_gdc_realn.bam 34893541717 BAM harmonized CPTAC3 fdcb0e80-77b9-452e-8101-0cbf5ae73ca6 a2effead85d1cd3d361982a1a3dc4414 {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.MethArray.Green.Tbm C3L-01700 AML Methylation_Array tumor_bone_marrow CPT0200690002 203561450106_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 27044b14-54c1-42cf-973c-9f332b585614 7ced8590abbff8c33d8331f21823d1c4 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.MethArray.Red.Tbm C3L-01700 AML Methylation_Array tumor_bone_marrow CPT0200690002 203561450106_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 f6eec611-fdfb-4b26-a30c-13ec6db7ebb2 119ba3868fb765f144df6bc353322902 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.miRNA-Seq.S27_L002_R1.Tbm C3L-01700 AML miRNA-Seq tumor_bone_marrow CPT0200700002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATTCCT_S27_L002_R1_001.unaln.bam 229207078 BAM S27_L002_R1 unaligned CPTAC3 134d1fa9-4d15-45fa-9bf2-eb795f83e933 786a1a82a5a53b8d41686befbd638c4a {"aliquot_tag": "ALQ_c53a26df", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.miRNA-Seq.Tbm.hg38 C3L-01700 AML miRNA-Seq tumor_bone_marrow CPT0200700002 665d766e-2604-4434-b02f-d8895d315e53_mirnaseq_gdc_realn.bam 252873972 BAM harmonized CPTAC3 796254fa-8bbd-4214-a151-62dc2acb24ef 524aca3a29cc829ec944a5fcb65771aa {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.RNA-Seq.chimeric.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.chimeric.gdc_realn.bam 31799306 BAM chimeric harmonized CPTAC3 25c2a4b6-2d3f-47cc-86a7-4c047a428774 50ab8e5039334a4d99e4431c0f5915c9 {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.RNA-Seq.genomic.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.genomic.gdc_realn.bam 7755034841 BAM genomic harmonized CPTAC3 9a2d45b9-e371-4407-8b31-63c684b65cd4 84a8580d8b265ce715928ba3c89525c7 {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.RNA-Seq.S21_L006_R1.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R1_001.fastq.gz 3805045729 FASTQ S21_L006_R1 unaligned CPTAC3 f456c6d9-3147-4e10-ad0a-c4125bc6a38b abfe9184fb20c422610fa0ec7f60d632 {"aliquot_tag": "ALQ_c53a26df", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.RNA-Seq.S21_L006_R2.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R2_001.fastq.gz 4349536713 FASTQ S21_L006_R2 unaligned CPTAC3 80547ec7-4f9f-45e6-baa4-36be1dbd9965 c41cb44d081fbb446aab8e25c74bba45 {"aliquot_tag": "ALQ_c53a26df", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.RNA-Seq.transcriptome.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.transcriptome.gdc_realn.bam 9106457661 BAM transcriptome harmonized CPTAC3 77c631d1-8a00-4b06-aad6-e8569f69ff14 0763389605c76e0975b55dc47ef174c6 {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.WGS.Nbc C3L-01700 AML WGS buccal_normal CPT0200790002 CPT0200790002.WholeGenome.RP-1303.bam 80790915888 BAM aligned CPTAC3 2612ec86-28e4-4395-ae9d-39a5c2a3af4c d656e4ceb20bc268d367593638d864ff {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01700.WGS.Nbc.hg38 C3L-01700 AML WGS buccal_normal CPT0200790002 7516f386-c88b-4bb7-8387-3973bf607a6b_wgs_gdc_realn.bam 117965029474 BAM harmonized CPTAC3 c9ca3855-56ab-43b4-94ba-b9be6a3bba97 d2953f95329a9d4392ee6da729b98eb8 {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01700.WGS.Tbm C3L-01700 AML WGS tumor_bone_marrow CPT0200690002 CPT0200690002.WholeGenome.RP-1303.bam 60445639298 BAM aligned CPTAC3 1955550f-7238-4c76-ae95-4d55ccbeeaaa 9767b4f424f6ade993cb458f1ef30357 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.WGS.Tbm.hg38 C3L-01700 AML WGS tumor_bone_marrow CPT0200690002 033d0e2c-f775-4175-af88-e5ee38b6f78d_wgs_gdc_realn.bam 87131472032 BAM harmonized CPTAC3 b0dc159d-ba72-46f7-a292-b64202b41de3 74623237c4d108edf1da4b8f288befa3 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.WXS.Nbc C3L-01700 AML WXS buccal_normal CPT0200790002 CPT0200790002.WholeExome.RP-1303.bam 26154482324 BAM aligned CPTAC3 8fdc46cf-d09a-4f44-b1c6-070aca873442 78ae31b04db4a727a18d39477106e4cb {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01700.WXS.Nbc.hg38 C3L-01700 AML WXS buccal_normal CPT0200790002 7516f386-c88b-4bb7-8387-3973bf607a6b_wxs_gdc_realn.bam 36212867962 BAM harmonized CPTAC3 676720f7-87ab-4d27-b690-8f1cb45a3553 afdd5e21c53151158bdc27d2c9a888ef {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal"} -C3L-01700.WXS.Tbm C3L-01700 AML WXS tumor_bone_marrow CPT0200690002 CPT0200690002.WholeExome.RP-1303.bam 26681592219 BAM aligned CPTAC3 a2706344-3c5a-4879-897c-c32c49e7ccdc 4d47f41b6bc01a2656ae1536084c84d9 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01700.WXS.Tbm.hg38 C3L-01700 AML WXS tumor_bone_marrow CPT0200690002 033d0e2c-f775-4175-af88-e5ee38b6f78d_wxs_gdc_realn.bam 37431702287 BAM harmonized CPTAC3 373bc943-3146-4c77-920e-ce7624d3eb57 5639417bf248ba887c4e3d09bd29d595 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-01702.ADD_412fa909.MethArray.Green.T C3L-01702 PDA Methylation_Array tumor CPT0094830010 202234380050_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 438bc4df-f421-4585-9a47-b5cee9667812 40e25dc510c47f3a5334f50798c98044 {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01702.ADD_412fa909.MethArray.Red.T C3L-01702 PDA Methylation_Array tumor CPT0094830010 202234380050_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 bd493cff-cbf2-48e4-865b-07287c6dab44 609fd297afae6407598ad5a9799e402f {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01702.ADD_412fa909.WGS.T C3L-01702 PDA WGS tumor CPT0094830010 CPT0094830010.WholeGenome.RP-1303.bam 58687941397 BAM aligned CPTAC3 a602cf67-ca06-48a6-8338-30ee4d1d77b4 4b055203fddf86aa982d869c6cebddf7 {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01702.ADD_412fa909.WGS.T.hg38 C3L-01702 PDA WGS tumor CPT0094830010 55cb86b0-a9bf-4ebe-a6e1-4980151e80cf_wgs_gdc_realn.bam 87944993380 BAM harmonized CPTAC3 07e5550b-cc74-4209-a752-5ca156d2362a 5ce8012f60ebeed2c60a150b07a29a9b {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01702.ADD_412fa909.WXS.T C3L-01702 PDA WXS tumor CPT0094830010 CPT0094830010.WholeExome.RP-1303.bam 29146374479 BAM aligned CPTAC3 44ee9592-592d-41d3-87b7-4b1ed91b0ba4 ec00986e72bcbb460f8b4a0a58e41e69 {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01702.ADD_412fa909.WXS.T.hg38 C3L-01702 PDA WXS tumor CPT0094830010 55cb86b0-a9bf-4ebe-a6e1-4980151e80cf_wxs_gdc_realn.bam 39992771737 BAM harmonized CPTAC3 72ae9b49-9baa-4db9-a3be-46eebb8e3589 fb452736937f3b109c7137b6899dc5af {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01702.miRNA-Seq.S9_L006_R1.T C3L-01702 PDA miRNA-Seq tumor CPT0094830007 180828_UNC32-K00270_0112_AHWTLNBBXX_GTAGAG_S9_L006_R1_001.unaln.bam 284932613 BAM S9_L006_R1 unaligned CPTAC3 f074102a-9da6-4f33-b66e-f8649ab346ce ff50a265da27e73f5175a9e10f7fc64a {"aliquot_tag": "ALQ_c6500deb", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01702.miRNA-Seq.T.hg38 C3L-01702 PDA miRNA-Seq tumor CPT0094830007 1353f095-3b61-4410-a77f-43f4b366bc82_mirnaseq_gdc_realn.bam 311898874 BAM harmonized CPTAC3 77c2bae3-6a6c-455f-8c9e-f26b0b8a8ab5 48bd491445ad0f17eb4b60c3920d34b2 {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor"} -C3L-01702.RNA-Seq.chimeric.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.chimeric.gdc_realn.bam 114389081 BAM chimeric harmonized CPTAC3 66d1cb7a-5f92-4e45-83ae-20f0bf2c6ca8 295233efc141bf685ce7338b579f3287 {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor"} -C3L-01702.RNA-Seq.genomic.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.genomic.gdc_realn.bam 9542431073 BAM genomic harmonized CPTAC3 cff79f85-0bdc-4a14-886d-b0f3b48156a6 8174110d2f130d943e0d4cd0b8a2bf45 {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor"} -C3L-01702.RNA-Seq.S22_L006_R1.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R1_001.fastq.gz 4259382174 FASTQ S22_L006_R1 unaligned CPTAC3 a8bbcd02-1dbd-4841-9abf-147a007025ab 257f300b83231fe9b1f75ec0d8aa9bd7 {"aliquot_tag": "ALQ_c6500deb", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01702.RNA-Seq.S22_L006_R2.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R2_001.fastq.gz 4636593997 FASTQ S22_L006_R2 unaligned CPTAC3 2a6ed8fb-e80c-497b-aa15-fff187d6e3a7 bf8c20e6a4b4a5a52665fb86b7980b0d {"aliquot_tag": "ALQ_c6500deb", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01702.RNA-Seq.transcriptome.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.transcriptome.gdc_realn.bam 10224696208 BAM transcriptome harmonized CPTAC3 7ac0abb1-d731-42f9-a6f8-337ca8a75ce0 2f2bfa21582175b3b77f50e7f856a06f {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor"} -C3L-01702.Targeted.T C3L-01702 PDA Targeted_Sequencing tumor CPT0094830010_1 CPT0094830010_1.CustomSelection.RP-1303.PDO-18786.bam 5580823428 BAM aligned CPTAC3 1be815f0-15eb-414a-adcf-81aaed2aa4cf f667b424e85b355fecb907b88526ce20 {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor"} -C3L-01702.Targeted.T.hg38 C3L-01702 PDA Targeted_Sequencing tumor CPT0094830010_1 76607a42-17bf-4fe3-b086-c68c0b5f857b_targetedsequencing_gdc_realn.bam 7641156919 BAM harmonized CPTAC3 62f9f32d-fbdb-4d3c-8dce-77d92ac76b7e 9150a76b1755729ab3265178bc6d4469 {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor"} -C3L-01702.WGS.N C3L-01702 PDA WGS blood_normal CPT0094880007 CPT0094880007.WholeGenome.RP-1303.bam 66603108727 BAM aligned CPTAC3 0a8e9af3-adc6-478f-bc4b-4398e6ad20fb 123e112a505af678905f81b6f2f73504 {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01702.WGS.N.hg38 C3L-01702 PDA WGS blood_normal CPT0094880007 bd447a9a-1de1-4b99-83b1-bc021ce634f8_wgs_gdc_realn.bam 98616070203 BAM harmonized CPTAC3 f10fc8b4-5c83-4b4a-a27c-4f42bb53aff5 e419f9c997c7fc2cbf3d4631537073a9 {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01702.WXS.N C3L-01702 PDA WXS blood_normal CPT0094880007 CPT0094880007.WholeExome.RP-1303.bam 35445807566 BAM aligned CPTAC3 12468c4b-d9ce-4d7b-a291-49628aaf34e4 eebbb203b9b82fa7867829ce9991d4ea {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01702.WXS.N.hg38 C3L-01702 PDA WXS blood_normal CPT0094880007 bd447a9a-1de1-4b99-83b1-bc021ce634f8_wxs_gdc_realn.bam 49848189087 BAM harmonized CPTAC3 60696094-cd7b-40cf-9e6d-d51915c7a511 c0c776af9f146669ffa4b939f87ba52a {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01702.WXS.T C3L-01702 PDA WXS tumor CPT0094830010_1 CPT0094830010_1.WholeExome.RP-1303.bam 54828665281 BAM aligned CPTAC3 477cb053-f14e-4957-85c4-9029aa12e15a e7ab5296f7ce22a87483e2f6670ef93c {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor"} -C3L-01702.WXS.T.hg38 C3L-01702 PDA WXS tumor CPT0094830010_1 76607a42-17bf-4fe3-b086-c68c0b5f857b_wxs_gdc_realn.bam 74973388821 BAM harmonized CPTAC3 6a4fd777-cb3b-4fc1-9eb0-3e65847a51f9 3e0178881d6382bea22a28e27dde1582 {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor"} -C3L-01703.ADD_3853a6bc.MethArray.Green.T C3L-01703 PDA Methylation_Array tumor CPT0094940010 202234380064_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 714472e8-9bfe-4fe9-bed3-21e1a5715cbe 145d08ad4ce0bd56b6758865c4af47a7 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01703.ADD_3853a6bc.MethArray.Red.T C3L-01703 PDA Methylation_Array tumor CPT0094940010 202234380064_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6b86d69c-78a1-4f81-9f5c-bd4f709b74c2 0ad8053a266b06764e611fffffef2d96 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01703.ADD_3853a6bc.WGS.T C3L-01703 PDA WGS tumor CPT0094940010 CPT0094940010.WholeGenome.RP-1303.bam 63236078790 BAM aligned CPTAC3 1c6c1eac-4121-4b8f-a3c3-ed1ed2894bfb 5b9c11cb417cd04464f141846f63ed44 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01703.ADD_3853a6bc.WGS.T.hg38 C3L-01703 PDA WGS tumor CPT0094940010 22e84ec7-9a85-4e63-9eb2-93c3df982d12_wgs_gdc_realn.bam 93446960059 BAM harmonized CPTAC3 e4b8c2ab-d38f-4be2-b18b-f49825caa583 92906f7ff2c8101ff39a67ae07f4400d {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01703.ADD_3853a6bc.WXS.T C3L-01703 PDA WXS tumor CPT0094940010 CPT0094940010.WholeExome.RP-1303.bam 39561107744 BAM aligned CPTAC3 72386d2d-a0a6-425b-adf2-685b36e513c0 0b2846784642c667c46ed27b5a673d5b {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01703.ADD_3853a6bc.WXS.T.hg38 C3L-01703 PDA WXS tumor CPT0094940010 22e84ec7-9a85-4e63-9eb2-93c3df982d12_wxs_gdc_realn.bam 54828452093 BAM harmonized CPTAC3 b6c9c622-0812-4e42-8935-59c9d8f6d127 fbf6ca882de3c35d62e43ab9ebcbc876 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3L-01703.MethArray.Green.A C3L-01703 PDA Methylation_Array tissue_normal CPT0094960010 203561450023_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f38ae311-48b0-44a7-8169-9884a6658642 98586614749abf7edcf3193d697fb84f {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.MethArray.Red.A C3L-01703 PDA Methylation_Array tissue_normal CPT0094960010 203561450023_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 3fd23c44-da6f-47f4-a499-0d8cdd15fc99 91339c86e8175f208d771ae8ecc744ea {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.miRNA-Seq.A.hg38 C3L-01703 PDA miRNA-Seq tissue_normal CPT0094960008 87a356a4-beb8-4f93-baee-d84614c8416a_mirnaseq_gdc_realn.bam 275503606 BAM harmonized CPTAC3 2b4d7f10-2222-45c1-bf14-8064c2518c0a 50cb66e33451e19310cf68f8d5d9b889 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.miRNA-Seq.S10_L006_R1.T C3L-01703 PDA miRNA-Seq tumor CPT0094940007 180828_UNC32-K00270_0112_AHWTLNBBXX_GTCCGC_S10_L006_R1_001.unaln.bam 252951231 BAM S10_L006_R1 unaligned CPTAC3 b41bc34e-54fa-4cd5-8441-cf3b3e435207 57d9194b7ad7fb0d6f643a979c7dac49 {"aliquot_tag": "ALQ_bf2c025e", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01703.miRNA-Seq.S12_L001_R1.A C3L-01703 PDA miRNA-Seq tissue_normal CPT0094960008 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L001_R1_001.unaln.bam 245669243 BAM S12_L001_R1 unaligned CPTAC3 6ad9c5c3-d9e8-4d87-93fd-17970e8bd8c8 284ada4734f65e116e6823808135c07a {"aliquot_tag": "ALQ_55534caf", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.miRNA-Seq.T.hg38 C3L-01703 PDA miRNA-Seq tumor CPT0094940007 759c4173-56fc-4b7f-b390-9e1e3bef9bac_mirnaseq_gdc_realn.bam 284109858 BAM harmonized CPTAC3 7d697178-c538-4198-8df0-5a10262a5ca6 782762999f57cb9f28c696d254733a70 {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor"} -C3L-01703.RNA-Seq.chimeric.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.chimeric.gdc_realn.bam 159451161 BAM chimeric harmonized CPTAC3 2c8f346b-e1a9-40b5-a9d6-d39620b4c087 4897599effd3aac89f23755033c5a510 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.RNA-Seq.chimeric.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.chimeric.gdc_realn.bam 43518699 BAM chimeric harmonized CPTAC3 7ee463b4-d71b-4f05-a883-335cb02ffa89 e9171fd359886ad568a51b3115a1caea {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor"} -C3L-01703.RNA-Seq.genomic.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.genomic.gdc_realn.bam 8063932648 BAM genomic harmonized CPTAC3 499310fd-4883-4546-9233-d357c8a6fcc2 8acc823938075a45340e5b898c09ebe5 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.RNA-Seq.genomic.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.genomic.gdc_realn.bam 9166205172 BAM genomic harmonized CPTAC3 9e585e5e-33f4-4c83-aff5-cc45b6250bc3 c8438503dbeb684057b8edfa3aa93320 {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor"} -C3L-01703.RNA-Seq.S21_L006_R1.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R1_001.fastq.gz 3842278146 FASTQ S21_L006_R1 unaligned CPTAC3 007cdbeb-bf0e-4fd4-9474-6946c1b1c757 69e8d6edd5a68f79325fbe5e3ce579af {"aliquot_tag": "ALQ_bf2c025e", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01703.RNA-Seq.S21_L006_R2.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R2_001.fastq.gz 3983446937 FASTQ S21_L006_R2 unaligned CPTAC3 bc7fc91d-9d25-466f-9b13-3d875f3c0592 e2418050057230c1759525b1b5ca69b4 {"aliquot_tag": "ALQ_bf2c025e", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01703.RNA-Seq.S4_L006_R1.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R1_001.fastq.gz 3645287458 FASTQ S4_L006_R1 unaligned CPTAC3 be348100-73f3-4d89-99f1-2776e58503ef 16b1a0aabb120cdaeb27cee49e2756d2 {"aliquot_tag": "ALQ_55534caf", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.RNA-Seq.S4_L006_R2.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4079220631 FASTQ S4_L006_R2 unaligned CPTAC3 b7dd80aa-f652-4fad-a6de-425cebcd7616 e6aee5b5200dc63cc98f7f9cbadcb3f6 {"aliquot_tag": "ALQ_55534caf", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.RNA-Seq.transcriptome.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.transcriptome.gdc_realn.bam 9517166534 BAM transcriptome harmonized CPTAC3 50863830-af99-4048-97b8-219ec783969d f40046c49a33eff92ce3a12c6c03b4b8 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.RNA-Seq.transcriptome.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.transcriptome.gdc_realn.bam 10122856775 BAM transcriptome harmonized CPTAC3 4eb62ba1-7294-4596-b1ea-f05e73fb522b a08a05e76e0edf5ef81ceaaf03be797d {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor"} -C3L-01703.Targeted.T C3L-01703 PDA Targeted_Sequencing tumor CPT0094940010_1 CPT0094940010_1.CustomSelection.RP-1303.PDO-18786.bam 4809621426 BAM aligned CPTAC3 7468a6f6-9521-4af0-8608-c32a74e0984f 380776795bbaef6d8839b6e2a35b560b {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor"} -C3L-01703.Targeted.T.hg38 C3L-01703 PDA Targeted_Sequencing tumor CPT0094940010_1 80f4521f-2a80-40db-a560-2a54130807f4_targetedsequencing_gdc_realn.bam 6824307186 BAM harmonized CPTAC3 04ce72ee-9cde-4769-925c-f4600a9851b5 9aca35dc743ebad441fbdb5ef08f0b80 {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor"} -C3L-01703.WGS.N C3L-01703 PDA WGS blood_normal CPT0094970002 CPT0094970002.WholeGenome.RP-1303.bam 66459083198 BAM aligned CPTAC3 05fe0bad-2316-4316-a574-c472ad54509a 45407d626a7e4410700a26cd442e7be3 {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal"} -C3L-01703.WGS.N.hg38 C3L-01703 PDA WGS blood_normal CPT0094970002 7c47a0a7-9a2f-4006-8f6a-3e28003ad4ba_wgs_gdc_realn.bam 96521300507 BAM harmonized CPTAC3 430334ce-61c4-44bd-86e4-30a9b853a35f 994e11bc666e4c3b31b873c1a475aa45 {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal"} -C3L-01703.WXS.A C3L-01703 PDA WXS tissue_normal CPT0094960010 CPT0094960010.WholeExome.RP-1303.bam 30385230653 BAM aligned CPTAC3 bf6703e9-667f-454d-aad3-98475ade9384 3a3fad650f9a6f647afa138138804cb8 {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.WXS.A.hg38 C3L-01703 PDA WXS tissue_normal CPT0094960010 2d4951d2-7c59-4a5b-80c3-7633bcc001ee_wxs_gdc_realn.bam 40587209626 BAM harmonized CPTAC3 3bffc900-69df-4e45-b830-8d9f7a197754 2fa931afff54f85f2b98275a0556b7e0 {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01703.WXS.N C3L-01703 PDA WXS blood_normal CPT0094970002 CPT0094970002.WholeExome.RP-1303.bam 43038313993 BAM aligned CPTAC3 f2819075-c3ae-4c80-b049-5502bc6ca5fb b846cb0bace37ad667bc4e93d73da07b {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal"} -C3L-01703.WXS.N.hg38 C3L-01703 PDA WXS blood_normal CPT0094970002 7c47a0a7-9a2f-4006-8f6a-3e28003ad4ba_wxs_gdc_realn.bam 59541678927 BAM harmonized CPTAC3 6569b796-8c93-48a0-8c44-44bf35568138 88bac0db3756afc86bf3bfc9cc5c53b4 {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal"} -C3L-01703.WXS.T C3L-01703 PDA WXS tumor CPT0094940010_1 CPT0094940010_1.WholeExome.RP-1303.bam 64073774411 BAM aligned CPTAC3 aef819e4-e52e-4823-8a33-2e7425725a03 0c82c1ef61fc069c3d7644eb38450978 {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor"} -C3L-01703.WXS.T.hg38 C3L-01703 PDA WXS tumor CPT0094940010_1 80f4521f-2a80-40db-a560-2a54130807f4_wxs_gdc_realn.bam 87982640686 BAM harmonized CPTAC3 5c1ec140-50a7-49ee-9344-a08b57aa0ad5 b15dc15af7c04363f7fa64f1229c4c5d {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor"} -C3L-01729.MethArray.Green.T C3L-01729 UCEC Methylation_Array tumor CPT0127610006 203219650157_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 df1d7fed-defc-4b3e-9fb5-f36758a13276 7e706f8e053dd93198c2cfe18c300b39 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor"} -C3L-01729.MethArray.Red.T C3L-01729 UCEC Methylation_Array tumor CPT0127610006 203219650157_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 57da63e9-15ac-44bd-aa02-6698acc66fc2 617931fbe729ae9bce59a69274c75a9a {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor"} -C3L-01729.miRNA-Seq.S34_L002_R1.T C3L-01729 UCEC miRNA-Seq tumor CPT0127610009 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 287627244 BAM S34_L002_R1 unaligned CPTAC3 08841f34-39ae-453f-8da5-4081186260ba 2eaf9fbdcf96058063da858998062610 {"aliquot_tag": "ALQ_1adb0074", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01729.miRNA-Seq.T.hg38 C3L-01729 UCEC miRNA-Seq tumor CPT0127610009 f631e862-5911-4a72-8e3d-9a396b5845ea_mirnaseq_gdc_realn.bam 322114732 BAM harmonized CPTAC3 311deff7-3564-43b3-8b81-18b95b24fa40 07e04376a5a84ff9b84c76a6d2e762fa {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.chimeric.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.chimeric.gdc_realn.bam 163417062 BAM chimeric harmonized CPTAC3 04013ab8-ebd6-4e57-b7fc-b7f6c6134297 67f7b514d2968b370fca6775fd561ad7 {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.chimeric.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.chimeric.gdc_realn.bam 244298549 BAM chimeric harmonized CPTAC3 0a4c9f05-4524-4283-a0e2-03895c60b6ad a559ea667bccf598b2ee947d8a76f571 {"aliquot_tag": "ALQ_6ec0db26", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.genomic.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.genomic.gdc_realn.bam 9807675667 BAM genomic harmonized CPTAC3 73648173-962b-4917-82b5-96674cb59322 080310ad375c0257af4a2e89accd62b4 {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.genomic.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.genomic.gdc_realn.bam 10712819572 BAM genomic harmonized CPTAC3 14563c82-25f2-4092-a235-0a17a1c06b6a 2553566039eeb378d123bde1b4a9e960 {"aliquot_tag": "ALQ_6ec0db26", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.S22_R1.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R1_001.fastq.gz 7123899589 FASTQ S22_R1 unaligned CPTAC3 11fd98bd-7fc6-4c55-b059-b82b7aa5d264 f77f6c3adb8213333012867556367539 {"aliquot_tag": "ALQ_6ec0db26", "sample": "S22", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.S22_R2.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R2_001.fastq.gz 7407847324 FASTQ S22_R2 unaligned CPTAC3 c54fd92c-25f8-49ec-b779-1b162bb2cf37 f3870e6f2342b3a11b6f6e47cbdded95 {"aliquot_tag": "ALQ_6ec0db26", "sample": "S22", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.S5_L002_R1.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R1_001.fastq.gz 4610458129 FASTQ S5_L002_R1 unaligned CPTAC3 4604b126-1f14-4d78-8c65-2b2bdcfd1d3b ffdf9ac65ab11db58dd4cb6d1b7e24a2 {"aliquot_tag": "ALQ_1adb0074", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.S5_L002_R2.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R2_001.fastq.gz 4958931305 FASTQ S5_L002_R2 unaligned CPTAC3 25f71782-2738-4f40-a72b-68b2b1520e64 59e85c8dca23e73a83a5e2221e273741 {"aliquot_tag": "ALQ_1adb0074", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.transcriptome.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.transcriptome.gdc_realn.bam 12529261231 BAM transcriptome harmonized CPTAC3 20fb1b07-6ce5-458c-9d02-a94a7e4d97b0 9e104e3df85524415161fcccbc31ca31 {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor"} -C3L-01729.RNA-Seq.transcriptome.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.transcriptome.gdc_realn.bam 7433671458 BAM transcriptome harmonized CPTAC3 f1bfb3bf-c1d2-4bf1-9550-ead18b8eeb9e 524af9de239fe4abdf8c353a018761a0 {"aliquot_tag": "ALQ_6ec0db26", "gdc_sample_type": "Primary Tumor"} -C3L-01729.WGS.N C3L-01729 UCEC WGS blood_normal CPT0127680002 CPT0127680002.WholeGenome.RP-1303.bam 64426051726 BAM aligned CPTAC3 cc1cab01-5f68-48f1-ac83-d165ddb1f6fc cd07c3716e13c95d59b3c6703c9cfe08 {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01729.WGS.N.hg38 C3L-01729 UCEC WGS blood_normal CPT0127680002 7d95a659-ce2d-4ee3-a215-15999a007cc7_wgs_gdc_realn.bam 92867993921 BAM harmonized CPTAC3 0279c5ef-e231-4e28-b084-647b4c9eca0b 07f0ce3021d7f395cc92555b55cbe0b6 {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01729.WGS.T C3L-01729 UCEC WGS tumor CPT0127610006 CPT0127610006.WholeGenome.RP-1303.bam 65092057252 BAM aligned CPTAC3 ae7e6799-e503-41e7-b344-dfa95d819699 60d6782f2c6c9d08142309ee6ef87382 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor"} -C3L-01729.WGS.T.hg38 C3L-01729 UCEC WGS tumor CPT0127610006 ed31068d-d96f-4462-8e44-093998b8ec69_wgs_gdc_realn.bam 95091300301 BAM harmonized CPTAC3 ddf73173-ff17-4d73-96fa-ba7f34e63eca 76ce1331ed70356999b017c889e96d47 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor"} -C3L-01729.WXS.N C3L-01729 UCEC WXS blood_normal CPT0127680002 CPT0127680002.WholeExome.RP-1303.bam 35630084599 BAM aligned CPTAC3 ce7c1208-405d-48c4-95fd-6659226739cd 325399ebfecb46ec2650b37561c73e8e {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01729.WXS.N.hg38 C3L-01729 UCEC WXS blood_normal CPT0127680002 7d95a659-ce2d-4ee3-a215-15999a007cc7_wxs_gdc_realn.bam 47892515805 BAM harmonized CPTAC3 ddb1476d-74cf-4cea-a572-ea11374996b3 07d3f31f0c22265b9f2632ebfb81cf22 {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal"} -C3L-01729.WXS.T C3L-01729 UCEC WXS tumor CPT0127610006 CPT0127610006.WholeExome.RP-1303.bam 21381192947 BAM aligned CPTAC3 23636be8-09de-44c4-a949-368ccb81b6b6 63dbed20a904b0cebc1241980c0ab437 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor"} -C3L-01729.WXS.T.hg38 C3L-01729 UCEC WXS tumor CPT0127610006 ed31068d-d96f-4462-8e44-093998b8ec69_wxs_gdc_realn.bam 28807695812 BAM harmonized CPTAC3 769e18cd-4e3c-4e63-a99a-2d2dd3dbc9b8 e501511fcaa1a826446f642640931026 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor"} -C3L-01732.MethArray.Green.T C3L-01732 UCEC Methylation_Array tumor CPT0099910009 202234360025_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b4896c60-9995-47c9-9e7f-511f64f60dd3 a2246c94648bf289922eb64b3cdeaaec {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor"} -C3L-01732.MethArray.Red.T C3L-01732 UCEC Methylation_Array tumor CPT0099910009 202234360025_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 2b4dc5b4-ad8a-4450-807b-b2f017f148d0 eabc2cab47406ae15dfe3452bff6cff5 {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor"} -C3L-01732.miRNA-Seq.S11_L006_R1.T C3L-01732 UCEC miRNA-Seq tumor CPT0099910006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTGAAA_S11_L006_R1_001.unaln.bam 232386137 BAM S11_L006_R1 unaligned CPTAC3 9c7ad01c-9c11-48dc-be8e-1fc8f6dd6f85 c80d4b006fbea1e7828783d94a74d855 {"aliquot_tag": "ALQ_611cdc78", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01732.miRNA-Seq.T.hg38 C3L-01732 UCEC miRNA-Seq tumor CPT0099910006 fa39dc1c-7f56-4522-afff-862d568909eb_mirnaseq_gdc_realn.bam 255872199 BAM harmonized CPTAC3 1d8f2117-81bc-4f4e-8c66-52c21c865d1d eac00c3f6f126cc43589e653b4a5107b {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.chimeric.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.chimeric.gdc_realn.bam 124815586 BAM chimeric harmonized CPTAC3 4b8d5576-fec3-4471-8cd7-132c9f52ad16 cfd4812d3fb6703940ddeb9a04190c90 {"aliquot_tag": "ALQ_454d1bf", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.chimeric.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.chimeric.gdc_realn.bam 33438327 BAM chimeric harmonized CPTAC3 7484e710-0345-47c8-9085-adfbe50dfa5f aa404ba8493fcba83f38f43b6ce80bd0 {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.genomic.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.genomic.gdc_realn.bam 7257655565 BAM genomic harmonized CPTAC3 c4a8086c-03b3-42c5-a3fe-880bcf9b9774 4b691a24215cb7d7efff181a27124ee1 {"aliquot_tag": "ALQ_454d1bf", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.genomic.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.genomic.gdc_realn.bam 10254152483 BAM genomic harmonized CPTAC3 d2af1771-9a11-4140-ad02-7f72a3e91b63 31e3c46e2dc18e69334ac92a7ec65cf8 {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.S20_L006_R1.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R1_001.fastq.gz 4733741687 FASTQ S20_L006_R1 unaligned CPTAC3 b1bc0d03-c4da-4cbf-83f0-9923e34453b7 66c535fd473dec04be7ad375624b9e83 {"aliquot_tag": "ALQ_611cdc78", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.S20_L006_R2.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R2_001.fastq.gz 5089579238 FASTQ S20_L006_R2 unaligned CPTAC3 0f92fa3d-9fe1-47f1-8ceb-74db455e05c2 a87bb4871bbb50acc627b2ad75c76e23 {"aliquot_tag": "ALQ_611cdc78", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.S68_R1.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R1_001.fastq.gz 4648651866 FASTQ S68_R1 unaligned CPTAC3 f4b5e327-f0aa-40b5-9888-e4c9159558cf aad3affb0edd03bf5b3aaa8021309f48 {"aliquot_tag": "ALQ_454d1bf", "sample": "S68", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.S68_R2.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R2_001.fastq.gz 4795746454 FASTQ S68_R2 unaligned CPTAC3 852dd373-aefb-490e-9576-3ff9416b97be 4e2cf96d85655034faacbccbe4d29e46 {"aliquot_tag": "ALQ_454d1bf", "sample": "S68", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.transcriptome.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.transcriptome.gdc_realn.bam 5850951997 BAM transcriptome harmonized CPTAC3 ae5b151e-c2ff-4948-9495-deaafcb4f9f0 03ab77e919bcc194870588cfc41f1507 {"aliquot_tag": "ALQ_454d1bf", "gdc_sample_type": "Primary Tumor"} -C3L-01732.RNA-Seq.transcriptome.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.transcriptome.gdc_realn.bam 12240145051 BAM transcriptome harmonized CPTAC3 e49fd28f-86db-420f-a7d7-4409a0289437 6ed45525a66098763fe3a69d996644fa {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor"} -C3L-01732.WGS.N C3L-01732 UCEC WGS blood_normal CPT0099960002 CPT0099960002.WholeGenome.RP-1303.bam 67425693923 BAM aligned CPTAC3 f46ec9fe-a543-4e29-979a-b2ecf67af771 9bd8247fa78748c0b805e180b897cb53 {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01732.WGS.N.hg38 C3L-01732 UCEC WGS blood_normal CPT0099960002 0722e4e7-531f-414f-9618-b845877762ad_wgs_gdc_realn.bam 97748914052 BAM harmonized CPTAC3 4df6151e-2e7b-485a-b75e-f8ddafeb1f57 ba83a970b0d9f832172c97ad60324a8c {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01732.WGS.T C3L-01732 UCEC WGS tumor CPT0099910009 CPT0099910009.WholeGenome.RP-1303.bam 55855023178 BAM aligned CPTAC3 061f73c9-9bb3-437b-a248-274d40400cbd 6e37d6c4d35462a7b37b073347f6ee2a {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor"} -C3L-01732.WGS.T.hg38 C3L-01732 UCEC WGS tumor CPT0099910009 c228864c-d4bb-4ab9-bf32-0c233cb7fc93_wgs_gdc_realn.bam 80671456253 BAM harmonized CPTAC3 332816b7-0a2d-4655-b650-cb7734827885 6412e536d0edaad2ac95d77ba88898d2 {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor"} -C3L-01732.WXS.N C3L-01732 UCEC WXS blood_normal CPT0099960002 CPT0099960002.WholeExome.RP-1303.bam 30842109459 BAM aligned CPTAC3 fff36643-e8ba-44b0-88c0-0c20d98b78db 91426ef54cb54ab6dd4eedca7fa89bee {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01732.WXS.N.hg38 C3L-01732 UCEC WXS blood_normal CPT0099960002 0722e4e7-531f-414f-9618-b845877762ad_wxs_gdc_realn.bam 41422060855 BAM harmonized CPTAC3 e5e3670b-8686-4b6b-b1b0-6fcb8449d564 58a901c0b3d5cbe6b18f2c313f682ed7 {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal"} -C3L-01732.WXS.T C3L-01732 UCEC WXS tumor CPT0099910009 CPT0099910009.WholeExome.RP-1303.bam 35096509600 BAM aligned CPTAC3 69f5db63-9fca-4c12-a9b9-138ee23b7654 624202c5697742d10ab3d680b3dfcd0d {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor"} -C3L-01732.WXS.T.hg38 C3L-01732 UCEC WXS tumor CPT0099910009 c228864c-d4bb-4ab9-bf32-0c233cb7fc93_wxs_gdc_realn.bam 47428526184 BAM harmonized CPTAC3 fa860b98-c244-49e9-bfaa-2db56979641d f530a563b2a0eaa9a7595e13390e1c52 {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor"} -C3L-01739.MethArray.Green.T C3L-01739 UCEC Methylation_Array tumor CPT0100100009 202234380050_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 79692d4b-70c0-404e-998b-c60dac49dc61 17a4900123c2b2c4eaac7bdb80d0a916 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor"} -C3L-01739.MethArray.Red.T C3L-01739 UCEC Methylation_Array tumor CPT0100100009 202234380050_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 87eacc2d-1bdf-456a-99bf-ca5e5d14524e 5c0a43cb433870e5bdc136b71247c179 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor"} -C3L-01739.miRNA-Seq.S12_L006_R1.T C3L-01739 UCEC miRNA-Seq tumor CPT0100100006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTGGCC_S12_L006_R1_001.unaln.bam 201420446 BAM S12_L006_R1 unaligned CPTAC3 d8d2eafe-cf4a-44e5-9594-f30789b79c0a 4cda17bd4024bdcd937797803c70931e {"aliquot_tag": "ALQ_2d833d1e", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01739.miRNA-Seq.T.hg38 C3L-01739 UCEC miRNA-Seq tumor CPT0100100006 f507146e-3dba-4627-8d65-80f54fbbb79b_mirnaseq_gdc_realn.bam 222583307 BAM harmonized CPTAC3 c3696ff1-33c2-4772-80da-9ec2b061e852 7e27ede8047a60d781f2315557e7aa07 {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.chimeric.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.chimeric.gdc_realn.bam 278151028 BAM chimeric harmonized CPTAC3 e056af85-2fdb-41d1-8860-d7ed8456ef53 50e518799f5be108b2ee8d58540a8481 {"aliquot_tag": "ALQ_48cb30d9", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.chimeric.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.chimeric.gdc_realn.bam 37284080 BAM chimeric harmonized CPTAC3 eb249ccd-9dc5-426f-ac78-9f88c8f7cb36 f1cd4e0fd7424cd983ac9ce37d64da6d {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.genomic.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.genomic.gdc_realn.bam 11830628399 BAM genomic harmonized CPTAC3 f96a68f5-1458-444e-82f5-0f7f9a0f8bf8 ccd15340ec6b40aa815d7fe6474101ec {"aliquot_tag": "ALQ_48cb30d9", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.genomic.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.genomic.gdc_realn.bam 9557950272 BAM genomic harmonized CPTAC3 c81ba1ba-d541-467e-a7f3-b71d2ef4d603 5e1648f78f4cab7f1797c1b744296e77 {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.S23_L006_R1.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 4518577327 FASTQ S23_L006_R1 unaligned CPTAC3 d95f57a9-4a63-4b0b-96cc-9648528d0bcf 6e1a33f929b683e4173797579034cbe7 {"aliquot_tag": "ALQ_2d833d1e", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.S23_L006_R2.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 4925058504 FASTQ S23_L006_R2 unaligned CPTAC3 0dea6d6e-bb3f-4413-973c-e323be312921 7592dbdc60b6f127ea72b2fd693e6973 {"aliquot_tag": "ALQ_2d833d1e", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.S30_R1.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R1_001.fastq.gz 7193537019 FASTQ S30_R1 unaligned CPTAC3 dcefc962-c9a5-41d0-aa6b-bdf0d39268b5 b564ec71e7e5932d67c554670ce4fc2d {"aliquot_tag": "ALQ_48cb30d9", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.S30_R2.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R2_001.fastq.gz 7397365680 FASTQ S30_R2 unaligned CPTAC3 bf10e4b6-ff52-48c8-b16a-835a3cc3f5bd a90f37b28b50030c7b9088665bfc3506 {"aliquot_tag": "ALQ_48cb30d9", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.transcriptome.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.transcriptome.gdc_realn.bam 5826531711 BAM transcriptome harmonized CPTAC3 c6c68c75-e72b-46d5-9a4e-eb2b878f6589 2c3e9fcccc67f3e65252db2b4a48d320 {"aliquot_tag": "ALQ_48cb30d9", "gdc_sample_type": "Primary Tumor"} -C3L-01739.RNA-Seq.transcriptome.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.transcriptome.gdc_realn.bam 12324883320 BAM transcriptome harmonized CPTAC3 87d4bed9-03ad-4f3a-8b3a-333cd2250f22 7bf9eac8968e6b8da42907e6418779a8 {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor"} -C3L-01739.WGS.N C3L-01739 UCEC WGS blood_normal CPT0100140002 CPT0100140002.WholeGenome.RP-1303.bam 58244167790 BAM aligned CPTAC3 eac6c29e-4587-4f2a-ad3c-ba4eff1adc6d cb1d99b40e720b8f9c7d2f637a77ac11 {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01739.WGS.N.hg38 C3L-01739 UCEC WGS blood_normal CPT0100140002 34b6ff5e-3acd-4b44-a635-060ce8ef0f4a_wgs_gdc_realn.bam 85287636797 BAM harmonized CPTAC3 9a8754ae-98f3-4361-ab03-42c306872deb 771fb50895150cf0af4730068c61705c {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01739.WGS.T C3L-01739 UCEC WGS tumor CPT0100100009 CPT0100100009.WholeGenome.RP-1303.bam 65824019064 BAM aligned CPTAC3 d9c266f8-9989-40ce-807d-b944678c25f3 171a89872b1be76a739ce91024b7c583 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor"} -C3L-01739.WGS.T.hg38 C3L-01739 UCEC WGS tumor CPT0100100009 198a52d3-9a16-4843-a995-9c29e2007678_wgs_gdc_realn.bam 94404624833 BAM harmonized CPTAC3 4d2f9570-69e8-4c2c-ad1e-2697e637c682 e070066db09eee709c336042d80a1598 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor"} -C3L-01739.WXS.N C3L-01739 UCEC WXS blood_normal CPT0100140002 CPT0100140002.WholeExome.RP-1303.bam 27560706196 BAM aligned CPTAC3 3f23eef4-7990-4e4b-9080-66bab31ba0a5 3ff47fb526fed3578fc799d3b03dec11 {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01739.WXS.N.hg38 C3L-01739 UCEC WXS blood_normal CPT0100140002 34b6ff5e-3acd-4b44-a635-060ce8ef0f4a_wxs_gdc_realn.bam 37027242763 BAM harmonized CPTAC3 b119fa15-ca77-42d1-89c8-6ee2cb72696f 25a4c1892cf49133ed1a819c65f7220c {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-01739.WXS.T C3L-01739 UCEC WXS tumor CPT0100100009 CPT0100100009.WholeExome.RP-1303.bam 36758203683 BAM aligned CPTAC3 2dd848ae-257b-44e7-ba25-dba20133a956 bfe243365f400d40c55365368e1df1fb {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor"} -C3L-01739.WXS.T.hg38 C3L-01739 UCEC WXS tumor CPT0100100009 198a52d3-9a16-4843-a995-9c29e2007678_wxs_gdc_realn.bam 50435269298 BAM harmonized CPTAC3 d8877efc-26df-42c7-b661-6008edf03ae4 5864fdaeadee25f918c599491e05088a {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor"} -C3L-01744.MethArray.Green.T C3L-01744 UCEC Methylation_Array tumor CPT0093280009 202234370093_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 19a373d8-419c-4ce4-8d4b-662efd454251 3d83f7ae28ab2de6c17470b56cd0842d {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor"} -C3L-01744.MethArray.Red.T C3L-01744 UCEC Methylation_Array tumor CPT0093280009 202234370093_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 eda68eec-1496-4ae1-b4da-f61b5f0452d7 2f3fe696e40fa4a03335766be25850d3 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor"} -C3L-01744.miRNA-Seq.S22_L007_R1.T C3L-01744 UCEC miRNA-Seq tumor CPT0093280006 180724_UNC32-K00270_0106_BHWK3MBBXX_TCGAAG_S22_L007_R1_001.unaln.bam 175096830 BAM S22_L007_R1 unaligned CPTAC3 261cd912-f937-4cd4-a7df-1194e435bba4 18a418a2ba74a0533f025ebe90426c64 {"aliquot_tag": "ALQ_a2bb1184", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01744.miRNA-Seq.T.hg38 C3L-01744 UCEC miRNA-Seq tumor CPT0093280006 7a57a25f-1d9d-4823-9731-805c24799fc7_mirnaseq_gdc_realn.bam 190977432 BAM harmonized CPTAC3 deb6071c-b4de-4b20-aaa1-471649b6d866 19407bfb55816763457d4849dcb825e8 {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.chimeric.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.chimeric.gdc_realn.bam 290289941 BAM chimeric harmonized CPTAC3 6fca9b8e-2a92-4ef4-8d21-eda576a7012a 63464ffd8aea3a8a5dc75da892a62a9a {"aliquot_tag": "ALQ_83ef3a46", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.chimeric.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.chimeric.gdc_realn.bam 73059443 BAM chimeric harmonized CPTAC3 4ee217a1-20e5-4e43-a622-a5f16ab3f60c 759067fe1e1f375d001537e1039d1a7e {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.genomic.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.genomic.gdc_realn.bam 11702739929 BAM genomic harmonized CPTAC3 3535d479-a02a-4c35-b932-dbe52cd7b66f 31868a502d8ba2b09913abf7c6d8032d {"aliquot_tag": "ALQ_83ef3a46", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.genomic.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.genomic.gdc_realn.bam 12383061917 BAM genomic harmonized CPTAC3 fadf4b9e-ac98-4373-a816-de2b32bcb90d e2463b9afd2cb60f1258b54acb1a174b {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.S22_L006_R1.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R1_001.fastq.gz 5831041874 FASTQ S22_L006_R1 unaligned CPTAC3 0eefe67a-b297-4c2f-87ad-d25b83e43a2b c340f987a8602c9626ef8e9dd8ae7ec8 {"aliquot_tag": "ALQ_a2bb1184", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.S22_L006_R2.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R2_001.fastq.gz 6144467611 FASTQ S22_L006_R2 unaligned CPTAC3 6d97b258-2fc8-4b10-9c6c-d1e7dac46106 55488fc235fa581548202d6655ecdb15 {"aliquot_tag": "ALQ_a2bb1184", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.S53_R1.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R1_001.fastq.gz 6860518341 FASTQ S53_R1 unaligned CPTAC3 61ac0a53-a6a4-485b-b66b-5943ad25c674 baf73826b29853fb4170e8711575cb4d {"aliquot_tag": "ALQ_83ef3a46", "sample": "S53", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.S53_R2.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R2_001.fastq.gz 7051724252 FASTQ S53_R2 unaligned CPTAC3 1aa7308c-d11a-4363-b635-fe438693eadc f76e0ec43b5bd45755038cb8034c1861 {"aliquot_tag": "ALQ_83ef3a46", "sample": "S53", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.transcriptome.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.transcriptome.gdc_realn.bam 4802412909 BAM transcriptome harmonized CPTAC3 7c73e7db-9ebc-4800-b54e-f26b3e9087e5 0aa3b3779ae2af9e56979055fde9a45a {"aliquot_tag": "ALQ_83ef3a46", "gdc_sample_type": "Primary Tumor"} -C3L-01744.RNA-Seq.transcriptome.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.transcriptome.gdc_realn.bam 15402670786 BAM transcriptome harmonized CPTAC3 9baff2d1-700a-45a7-9d68-aa9a963d2fb1 9b02bca772886ffcdd1a1cd551477528 {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor"} -C3L-01744.WGS.N C3L-01744 UCEC WGS blood_normal CPT0093320002 CPT0093320002.WholeGenome.RP-1303.bam 65328130664 BAM aligned CPTAC3 fad09c9a-b5aa-4676-839e-627828a404b8 b20edd1955d6238df934e74d7200efee {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal"} -C3L-01744.WGS.N.hg38 C3L-01744 UCEC WGS blood_normal CPT0093320002 e3b971ec-48d2-431f-ae8b-719525fa1716_wgs_gdc_realn.bam 95904828699 BAM harmonized CPTAC3 59d5779f-3b81-49d3-9e1e-c081765a3df5 3b466849292659da30c8d40d07625717 {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal"} -C3L-01744.WGS.T C3L-01744 UCEC WGS tumor CPT0093280009 CPT0093280009.WholeGenome.RP-1303.bam 68825917887 BAM aligned CPTAC3 8dfd6085-73aa-462e-a3a8-e9d28a0f53fb b2dd89ecf3e0ceeb9a6c4dedc713eddf {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor"} -C3L-01744.WGS.T.hg38 C3L-01744 UCEC WGS tumor CPT0093280009 f52882fc-8b4f-47c1-bd89-bf72d116b7e6_wgs_gdc_realn.bam 101248759017 BAM harmonized CPTAC3 551e9aca-4705-4f05-8d2a-8f2dbc11eff7 5d5d3543ac254a8e62d8f2c7ecae6840 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor"} -C3L-01744.WXS.N C3L-01744 UCEC WXS blood_normal CPT0093320002 CPT0093320002.WholeExome.RP-1303.bam 37071618175 BAM aligned CPTAC3 df7c3154-2716-4dde-90aa-3424cabac508 85e5fd2c7c41edd25f99a9d976d00de3 {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal"} -C3L-01744.WXS.N.hg38 C3L-01744 UCEC WXS blood_normal CPT0093320002 e3b971ec-48d2-431f-ae8b-719525fa1716_wxs_gdc_realn.bam 51619385397 BAM harmonized CPTAC3 8b2f6755-245b-40fc-907d-062a356a39f3 307e6e4570daf59ab42ed002145445fc {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal"} -C3L-01744.WXS.T C3L-01744 UCEC WXS tumor CPT0093280009 CPT0093280009.WholeExome.RP-1303.bam 39779090097 BAM aligned CPTAC3 a977336f-32d5-4311-bfc0-16c88e46776a d0c3b90f63d6b42cb0a166f730e52335 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor"} -C3L-01744.WXS.T.hg38 C3L-01744 UCEC WXS tumor CPT0093280009 f52882fc-8b4f-47c1-bd89-bf72d116b7e6_wxs_gdc_realn.bam 53211653788 BAM harmonized CPTAC3 e3388e0d-3dd6-4fab-81e0-5fd54ced76b3 48f2e70407f90cd5bf99c438a4e725e7 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor"} -C3L-01749.MethArray.Green.T C3L-01749 UCEC Methylation_Array tumor CPT0127700006 203027380028_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 248a55d1-df53-42a0-b042-bd42d384e194 e83da0b789307069a6a3953fe64ad2d6 {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor"} -C3L-01749.MethArray.Red.T C3L-01749 UCEC Methylation_Array tumor CPT0127700006 203027380028_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 04268f32-5039-4d79-a361-f8a088481d15 7960feeecd613a486ffe49ce56f4c89d {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor"} -C3L-01749.miRNA-Seq.S40_L002_R1.T C3L-01749 UCEC miRNA-Seq tumor CPT0127700009 181108_UNC31-K00269_0162_AH255GBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 210482874 BAM S40_L002_R1 unaligned CPTAC3 b66630ca-12fc-4bbd-9e5c-a920b11e851a 2ad76097701d21a09c8c0981d2035dbb {"aliquot_tag": "ALQ_ece7fa61", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01749.miRNA-Seq.T.hg38 C3L-01749 UCEC miRNA-Seq tumor CPT0127700009 d2bf54fc-f8ea-4337-af00-25596053eef7_mirnaseq_gdc_realn.bam 234113415 BAM harmonized CPTAC3 30afe505-277f-4b75-8e2e-027e3b999e75 f6516ae2475cf65654ef1fceb088d8b0 {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.chimeric.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.chimeric.gdc_realn.bam 100937072 BAM chimeric harmonized CPTAC3 e44f686f-b670-4200-b112-581b1a94b44c 82fe7c946e84c21e6e6be4295a07662b {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.chimeric.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.chimeric.gdc_realn.bam 171318692 BAM chimeric harmonized CPTAC3 7491d510-62ca-44e1-b243-23f84382fe65 92b00894852f71bebc265b58e2c7ebb2 {"aliquot_tag": "ALQ_98fc2133", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.genomic.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.genomic.gdc_realn.bam 8623158934 BAM genomic harmonized CPTAC3 1bb9defb-674a-465e-9b60-207349539ce4 82a7fc9da016196114cb88c7f84dc8b6 {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.genomic.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.genomic.gdc_realn.bam 7754384329 BAM genomic harmonized CPTAC3 8abef200-b6bd-4551-99c5-97e8864ccdaf 66f89e3f3082be04a89ed0ed6141014a {"aliquot_tag": "ALQ_98fc2133", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.S1_L001_R1.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R1_001.fastq.gz 3938416423 FASTQ S1_L001_R1 unaligned CPTAC3 9dd3ea5a-a3bd-4434-9f0b-0d35cc305330 193ae2547b9384d86d8d21272240b153 {"aliquot_tag": "ALQ_ece7fa61", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.S1_L001_R2.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R2_001.fastq.gz 4035920408 FASTQ S1_L001_R2 unaligned CPTAC3 f7d79deb-c383-4e3b-b841-893600b4cfe7 6eaf595d0e0ed3f2f06a7f9e7b72f157 {"aliquot_tag": "ALQ_ece7fa61", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.S85_R1.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R1_001.fastq.gz 4798529068 FASTQ S85_R1 unaligned CPTAC3 d465c70b-65d3-4567-b275-b6c0caaedca1 08ceb0ce73dcfc3024fa7093215b4e97 {"aliquot_tag": "ALQ_98fc2133", "sample": "S85", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.S85_R2.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R2_001.fastq.gz 4946296881 FASTQ S85_R2 unaligned CPTAC3 fcaf44bb-0f9f-42bb-8163-b547d44eef1c 22248d8c4281e87d7555509ee0a37ec7 {"aliquot_tag": "ALQ_98fc2133", "sample": "S85", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.transcriptome.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.transcriptome.gdc_realn.bam 9086829853 BAM transcriptome harmonized CPTAC3 bd1b7fd9-ff8e-463e-ba6d-6264e77a3449 efc54362e3c13cbb1eaeb89ea2101dd2 {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor"} -C3L-01749.RNA-Seq.transcriptome.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.transcriptome.gdc_realn.bam 3946812640 BAM transcriptome harmonized CPTAC3 485b46ad-42c1-44ce-a7fd-316378a911f8 77b53fa06191c698e0f2e1de592371c1 {"aliquot_tag": "ALQ_98fc2133", "gdc_sample_type": "Primary Tumor"} -C3L-01749.WGS.N C3L-01749 UCEC WGS blood_normal CPT0127770002 CPT0127770002.WholeGenome.RP-1303.bam 59558409752 BAM aligned CPTAC3 d6747ee1-2d39-42b4-8fc6-5196110d9ae3 566453450f7af82f47e989bdc39024d4 {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01749.WGS.N.hg38 C3L-01749 UCEC WGS blood_normal CPT0127770002 048cef20-9b2d-4d4c-9662-0670ae87b014_wgs_gdc_realn.bam 84872635100 BAM harmonized CPTAC3 a8139c38-f0e8-4ff9-8243-81abd2d2d0e4 dcbf57794b12445bd7b319e2cc0ecc5a {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01749.WGS.T C3L-01749 UCEC WGS tumor CPT0127700006 CPT0127700006.WholeGenome.RP-1303.bam 64695334394 BAM aligned CPTAC3 7962d164-12f2-4a02-aac3-96ff165145ab 0528158e89919857e5089d4424040fe4 {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor"} -C3L-01749.WGS.T.hg38 C3L-01749 UCEC WGS tumor CPT0127700006 324ac6b5-8497-41d9-9c93-718e3af445df_wgs_gdc_realn.bam 94705051513 BAM harmonized CPTAC3 28696064-855a-4300-9824-4f5c562ea351 1f0af4b036bc4606af905f5638b5af65 {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor"} -C3L-01749.WXS.N C3L-01749 UCEC WXS blood_normal CPT0127770002 CPT0127770002.WholeExome.RP-1303.bam 45237761076 BAM aligned CPTAC3 b81d02d1-bf5c-4c64-9807-f6035ff339f7 304ccecfc60904e4de483f8974901099 {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01749.WXS.N.hg38 C3L-01749 UCEC WXS blood_normal CPT0127770002 048cef20-9b2d-4d4c-9662-0670ae87b014_wxs_gdc_realn.bam 61223798352 BAM harmonized CPTAC3 acc3c5e1-9eb7-4c26-85ee-225283fe228c 9c3d18b7c33fe539654e187361193588 {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal"} -C3L-01749.WXS.T C3L-01749 UCEC WXS tumor CPT0127700006 CPT0127700006.WholeExome.RP-1303.bam 22073915714 BAM aligned CPTAC3 88f9e224-6797-4b84-9bf1-73d5398d9705 1481cc244a955d6e6900163a8820bbda {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor"} -C3L-01749.WXS.T.hg38 C3L-01749 UCEC WXS tumor CPT0127700006 324ac6b5-8497-41d9-9c93-718e3af445df_wxs_gdc_realn.bam 30065806580 BAM harmonized CPTAC3 103f447d-e215-4736-948b-d0162689a878 b7e77f74a20cc04a6b98bde959393d4a {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor"} -C3L-01833.MethArray.Green.T C3L-01833 UCEC Methylation_Array tumor CPT0100010009 202234380050_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8a0bfdad-e5cd-43bd-992c-0fd3aaaef501 b215ad50ee8f63ad4559411884532eee {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.MethArray.Red.T C3L-01833 UCEC Methylation_Array tumor CPT0100010009 202234380050_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 3929fc71-3a4a-4a1a-8c74-5bcde498eb37 81c4c02bed5ff59e3abf287c7b3598f7 {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.miRNA-Seq.S13_L006_R1.T C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTTTCG_S13_L006_R1_001.unaln.bam 146463421 BAM S13_L006_R1 unaligned CPTAC3 0cf0de75-cdd0-4928-b012-ca1f218966e8 b4efd5649c81e001ad30ea072db25aed {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01833.miRNA-Seq.S21_L007_R1.T C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L007_R1_001.unaln.bam 148613148 BAM S21_L007_R1 unaligned CPTAC3 347ad43c-a905-4559-8b83-f32b5e9a1bc4 df40b2401f1b6eabce22697d44b63342 {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01833.miRNA-Seq.T.hg38 C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 bcd4ffbb-6a17-428a-b2c4-98eda37c0113_mirnaseq_gdc_realn.bam 325294046 BAM harmonized CPTAC3 abde0a82-8dfb-4244-9706-39f4d14a34e0 35029d3918916ff8bda13a6316ae9456 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.chimeric.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.chimeric.gdc_realn.bam 274367645 BAM chimeric harmonized CPTAC3 e80c2008-3d88-4972-8d3d-132057991da9 9b5f4f11977f88acc05acfc8139c76fd {"aliquot_tag": "ALQ_cf08021a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.chimeric.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.chimeric.gdc_realn.bam 32824644 BAM chimeric harmonized CPTAC3 cebbd4c1-6a36-4739-a8c0-5454552c0271 00a55c6f09777a48dbf228fadcaf0742 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.genomic.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.genomic.gdc_realn.bam 11934785924 BAM genomic harmonized CPTAC3 986f83d4-3621-4608-9443-fbf89d84fd90 ad401d990257eede137455816242d35e {"aliquot_tag": "ALQ_cf08021a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.genomic.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.genomic.gdc_realn.bam 8648961019 BAM genomic harmonized CPTAC3 07452e69-4720-47ec-a06d-6cc69f1ab6e1 faad28f9f12d52921337ca4fe29b8337 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.S18_L005_R1.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R1_001.fastq.gz 3954979116 FASTQ S18_L005_R1 unaligned CPTAC3 0707c2e3-fe4a-447e-88a1-7ebf9897403f 995ff954e0008799d5bc05782309af2b {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.S18_L005_R2.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R2_001.fastq.gz 4378439977 FASTQ S18_L005_R2 unaligned CPTAC3 c1ac3838-34f1-4b28-ab69-c4c2a8b92594 88dc2c19a8619fe49d3c3b886735baa7 {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.S6_R1.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R1_001.fastq.gz 7227952247 FASTQ S6_R1 unaligned CPTAC3 5bc8af46-2f1d-4e9f-96c1-31f1e0d584cb 70aa399ec00f6ac27ace2ab1b360a9b9 {"aliquot_tag": "ALQ_cf08021a", "sample": "S6", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.S6_R2.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R2_001.fastq.gz 7547116685 FASTQ S6_R2 unaligned CPTAC3 5382cf03-129b-4518-a0e8-62e8897f4013 1fdb05b96132c0f136ffc71a7a99ea38 {"aliquot_tag": "ALQ_cf08021a", "sample": "S6", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.transcriptome.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.transcriptome.gdc_realn.bam 8757240736 BAM transcriptome harmonized CPTAC3 72b5eefe-a827-4371-9a23-8346015d5e31 e2eba3be1088d073637138f9dbd50559 {"aliquot_tag": "ALQ_cf08021a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.RNA-Seq.transcriptome.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.transcriptome.gdc_realn.bam 8391566878 BAM transcriptome harmonized CPTAC3 c661091b-e011-40d1-b837-f72430d15bf8 1467f1a4e68ce2e49d67758e09d494c1 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor"} -C3L-01833.WGS.N C3L-01833 UCEC WGS blood_normal CPT0100050002 CPT0100050002.WholeGenome.RP-1303.bam 65311854468 BAM aligned CPTAC3 8df5e346-ef96-4b0e-b33a-08b3a205a41e 54069c42f48ac41235dc809e99cdd0f2 {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal"} -C3L-01833.WGS.N.hg38 C3L-01833 UCEC WGS blood_normal CPT0100050002 82cd6dc4-3a55-4dda-bead-8ad25b691833_wgs_gdc_realn.bam 96105426093 BAM harmonized CPTAC3 5b726450-60f7-4028-8d82-fe1e6d026f4e 39d3ce83f15a11ea89d841854b30ed75 {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal"} -C3L-01833.WGS.T C3L-01833 UCEC WGS tumor CPT0100010009 CPT0100010009.WholeGenome.RP-1303.bam 57633770826 BAM aligned CPTAC3 e903fcf2-11c8-418e-963a-d0a0875efd72 6fdd59ad154b8c96eed54b5e142f887a {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.WGS.T.hg38 C3L-01833 UCEC WGS tumor CPT0100010009 e1bf75ae-709e-484b-b4d7-2d589861b32c_wgs_gdc_realn.bam 83963530671 BAM harmonized CPTAC3 8e6318bc-bb0f-41a9-8595-059ccfda8f71 06ee2e2296e456af1a3251e2c6872985 {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.WXS.N C3L-01833 UCEC WXS blood_normal CPT0100050002 CPT0100050002.WholeExome.RP-1303.bam 43229235900 BAM aligned CPTAC3 adc0ead7-9e1c-4188-ac0c-7fbaeb332a54 211d21908a31b4d8898a08be8ccc1778 {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal"} -C3L-01833.WXS.N.hg38 C3L-01833 UCEC WXS blood_normal CPT0100050002 82cd6dc4-3a55-4dda-bead-8ad25b691833_wxs_gdc_realn.bam 59479282409 BAM harmonized CPTAC3 ac95ef0d-244f-4321-b071-e9cc28f73bde 6a3e28368ca67035aacd50a34a04c76e {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal"} -C3L-01833.WXS.T C3L-01833 UCEC WXS tumor CPT0100010009 CPT0100010009.WholeExome.RP-1303.bam 42621531080 BAM aligned CPTAC3 7b8b5412-c020-4abd-a1f1-99bb4faec5c7 9496331af01461ff265f5b8a253ced64 {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor"} -C3L-01833.WXS.T.hg38 C3L-01833 UCEC WXS tumor CPT0100010009 e1bf75ae-709e-484b-b4d7-2d589861b32c_wxs_gdc_realn.bam 57838495653 BAM harmonized CPTAC3 3b7748e1-6351-471b-aca7-0f34d5e5dbc6 f6ba992ecbf516ad7cecfa5de67a8aeb {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor"} -C3L-01834.ADD_d5e0acb7.MethArray.Green.T C3L-01834 GBM Methylation_Array tumor CPT0104220010 203027390049_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 a72dcd64-cc36-494c-9e15-21061834ab9d 1736dee091a53c995f1ea0588109103b {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01834.ADD_d5e0acb7.MethArray.Red.T C3L-01834 GBM Methylation_Array tumor CPT0104220010 203027390049_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 b70aedb4-4609-4fd4-9088-7bb8fa2319e6 0fec5faba0e5b4cd2fdcc721181e14dc {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01834.ADD_d5e0acb7.WXS.T C3L-01834 GBM WXS tumor CPT0104220010 CPT0104220010.WholeExome.RP-1303.bam 22939639897 BAM aligned CPTAC3 bd78ec3d-c033-4257-b250-2b90eeea5bca 9173bbf5b04c6e1d72559c968f06ac08 {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01834.ADD_d5e0acb7.WXS.T.hg38 C3L-01834 GBM WXS tumor CPT0104220010 c0308317-bfca-4564-bc9a-9e31ec5b1336_wxs_gdc_realn.bam 31018736739 BAM harmonized CPTAC3 18d26f34-47b9-4b58-81da-48f777001d49 607ea328e3a892bd3a0217d691cf9e35 {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01834.miRNA-Seq.S26_L004_R1.T C3L-01834 GBM miRNA-Seq tumor CPT0104220005 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L004_R1_001.unaln.bam 284212433 BAM S26_L004_R1 unaligned CPTAC3 8fb02a71-c6db-4a66-b59b-d7003c8811bb 6b6b19fa0a38a3e0838f5eb9a2a3cfcd {"aliquot_tag": "ALQ_bc916979", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01834.miRNA-Seq.T.hg38 C3L-01834 GBM miRNA-Seq tumor CPT0104220005 64ad87dc-140c-4030-a5b6-eda1a9946f2f_mirnaseq_gdc_realn.bam 317703220 BAM harmonized CPTAC3 fda976ec-7f45-426b-9846-274b67db15e0 839e19cde7f656fd5523460555afb52f {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor"} -C3L-01834.RNA-Seq.chimeric.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.chimeric.gdc_realn.bam 107259703 BAM chimeric harmonized CPTAC3 98ffd472-6c70-461f-9998-b921d4107960 5fd75cc49d54c034c5ad146bb7195c61 {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor"} -C3L-01834.RNA-Seq.genomic.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.genomic.gdc_realn.bam 9284663508 BAM genomic harmonized CPTAC3 5aeb675f-28a9-48a9-bd27-3c503ab09fbd 3d64cd7f804b30e57b28c7a94f2289b3 {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor"} -C3L-01834.RNA-Seq.S6_L008_R1.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4205998241 FASTQ S6_L008_R1 unaligned CPTAC3 bddce258-f479-4064-a83d-48bd5125aa0b 77e04d082814a887f1f71e4bad24219d {"aliquot_tag": "ALQ_bc916979", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01834.RNA-Seq.S6_L008_R2.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4708620005 FASTQ S6_L008_R2 unaligned CPTAC3 0ee9ed9c-5178-49a5-b72c-b8ca17b7f496 1c9801c14c49eca03d9cf651e788f620 {"aliquot_tag": "ALQ_bc916979", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01834.RNA-Seq.transcriptome.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.transcriptome.gdc_realn.bam 10850312525 BAM transcriptome harmonized CPTAC3 5b689fcc-2597-4e00-a891-896d3a4782cd 692ff95dc98ce75ffa2447a368a079e0 {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor"} -C3L-01834.WGS.N C3L-01834 GBM WGS blood_normal CPT0105090002 CPT0105090002.WholeGenome.RP-1303.bam 58510830219 BAM aligned CPTAC3 f48150ec-f2a3-40a2-9d9b-52193cfb7574 3c0ea3caf8dcef90aadb5de8bafffbd1 {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal"} -C3L-01834.WGS.N.hg38 C3L-01834 GBM WGS blood_normal CPT0105090002 7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wgs_gdc_realn.bam 85614011228 BAM harmonized CPTAC3 758f901a-f6be-4f59-bc5d-50185c78a336 fd09145a1ed87d8e44b4d6334ab4a88c {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal"} -C3L-01834.WXS.N C3L-01834 GBM WXS blood_normal CPT0105090002 CPT0105090002.WholeExome.RP-1303.bam 34684127259 BAM aligned CPTAC3 9844e3be-cc8e-4838-91a7-c7792ae4970d 18fed23c3f06c32eaafd90dfcc8b47fc {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal"} -C3L-01834.WXS.N.hg38 C3L-01834 GBM WXS blood_normal CPT0105090002 7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wxs_gdc_realn.bam 47769398348 BAM harmonized CPTAC3 2ce1baf3-67b6-4de5-bb81-51f89abbf1c6 9081d6e991c74b4121072a467b279d89 {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal"} -C3L-01836.DUP_2282a3ba.miRNA-Seq.S10_L004_R1.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086860006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L004_R1_001.unaln.bam 219403427 BAM S10_L004_R1 unaligned CPTAC3 2d61528b-198d-4dac-8a54-a6d1e4716a81 4abe6fabe89e020a6a57b0db404e5769 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_2282a3ba.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086860006 865e1117-eb6f-48f0-960c-c540c4a83445_mirnaseq_gdc_realn.bam 246767334 BAM harmonized CPTAC3 308077ab-01a2-4b4d-899f-54d6c7ca644e 9f10b1adb864e5a4b68809067c305087 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_2282a3ba.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.chimeric.gdc_realn.bam 134205822 BAM chimeric harmonized CPTAC3 03add013-04e7-40ac-a1e5-caa00da4474a 623a33c5d8c65c5a7c19fb1d2fe348aa {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_2282a3ba.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.genomic.gdc_realn.bam 8451361187 BAM genomic harmonized CPTAC3 8a02f335-5824-4c70-a010-62b282d536a2 0c16b459c496d207d0d4e532cf466c34 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_2282a3ba.RNA-Seq.S19_L005_R1.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R1_001.fastq.gz 4097422514 FASTQ S19_L005_R1 unaligned CPTAC3 768aa7e6-69e3-4feb-8b45-1c6858776a7d 9177f43c3205b114180a7fddc4cb4599 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_2282a3ba.RNA-Seq.S19_L005_R2.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R2_001.fastq.gz 4752243493 FASTQ S19_L005_R2 unaligned CPTAC3 859c5418-0c86-4271-b106-c1baebf4cbb7 e4aebe9a4e8aed197423f9fce1fe1475 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_2282a3ba.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.transcriptome.gdc_realn.bam 12185116241 BAM transcriptome harmonized CPTAC3 15ac5439-95a2-420f-b2a2-edb66874843c 0b7b4de3e399beaf3f91df1f782a0d98 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_9db21ddb.miRNA-Seq.S11_L004_R1.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086880006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L004_R1_001.unaln.bam 291075684 BAM S11_L004_R1 unaligned CPTAC3 253cf67e-a8ac-4980-8f79-82b2e6774950 e7a49ca00ef4139c45581378431659f5 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_9db21ddb.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086880006 a3866871-2b4d-4e46-a658-3ff43ed80465_mirnaseq_gdc_realn.bam 327307751 BAM harmonized CPTAC3 5bda4365-d781-49bb-9d2d-b0e84848e3b2 154fee12fe0b7de4581267cb54844e84 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_9db21ddb.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.chimeric.gdc_realn.bam 119558976 BAM chimeric harmonized CPTAC3 82634c1f-66fb-4eb1-b98e-2d33af73389d 80653a3235d0d0b8762a29e0164af2e1 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_9db21ddb.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.genomic.gdc_realn.bam 8919727513 BAM genomic harmonized CPTAC3 400ae53f-c8ba-463c-8570-01369329b98b 1843b028d7caa6c5c2e44cf31b73f2e9 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_9db21ddb.RNA-Seq.S17_L005_R1.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R1_001.fastq.gz 4285952667 FASTQ S17_L005_R1 unaligned CPTAC3 29ae1811-9252-44f8-aee8-7419a6f881f0 36543875e7c1859bdebe2ab624f9fb1b {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_9db21ddb.RNA-Seq.S17_L005_R2.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R2_001.fastq.gz 5055432049 FASTQ S17_L005_R2 unaligned CPTAC3 17b69746-ad1c-4716-9bc4-ff423e8bbc65 f3911931c4097bdd20b234f1d816c2af {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_9db21ddb.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.transcriptome.gdc_realn.bam 12824461403 BAM transcriptome harmonized CPTAC3 01ec33e8-1758-48e0-a23c-8756a37c3dcd 10e89d3ccbad6e58712e2c7b7dd97a38 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_b23dbe2b.MethArray.Green.T C3L-01836 CCRCC Methylation_Array tumor CPT0086860009 204372030074_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0ffe1538-3497-4520-93ca-12ac44151a15 d615c52d695266737cdeea8f9b103b04 {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_b23dbe2b.MethArray.Red.T C3L-01836 CCRCC Methylation_Array tumor CPT0086860009 204372030074_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 058b7baf-b6a8-4904-a13c-6f32d3cc9d7b 1027929d67ee4e34fed2d9e081579b26 {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_b23dbe2b.WGS.T C3L-01836 CCRCC WGS tumor CPT0086860009 CPT0086860009.WholeGenome.RP-2158.bam 21598653374 BAM aligned CPTAC3 a1363c44-5733-4673-b0a9-eeb950648173 94bdaea4a63da160fc0e29bd9ec0116e {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_b23dbe2b.WGS.T.hg38 C3L-01836 CCRCC WGS tumor CPT0086860009 54465230-bd1f-4cc6-a884-b66f9745bb61_wgs_gdc_realn.bam 62480126275 BAM harmonized CPTAC3 4c5e98e5-af52-4c77-b36c-f9180c2dfee9 e053c814ccaaf65edbe9f0dda1708454 {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_b23dbe2b.WXS.T C3L-01836 CCRCC WXS tumor CPT0086860009 CPT0086860009.WholeExome.RP-1303.bam 19200935637 BAM aligned CPTAC3 0ed67501-c064-48ef-a2db-ce415df7eaed 49f0f07ef90fad39182f9d7ac41e1b5f {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_b23dbe2b.WXS.T.hg38 C3L-01836 CCRCC WXS tumor CPT0086860009 54465230-bd1f-4cc6-a884-b66f9745bb61_wxs_gdc_realn.bam 26608149911 BAM harmonized CPTAC3 3b9fef0c-5740-4962-899d-981d61a33e98 2a92f9d544e1a39a7729a8b601739cfe {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_d0d004a.MethArray.Green.T C3L-01836 CCRCC Methylation_Array tumor CPT0086880009 204367490090_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4b24c5f2-9ea4-4ecb-bfb2-aa0a597f1ef2 58a7a71180dceab351426fa8c460114a {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_d0d004a.MethArray.Red.T C3L-01836 CCRCC Methylation_Array tumor CPT0086880009 204367490090_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 400d51ff-1295-4a0a-b2df-1f1a0a975b9f c52a16d8ccb18c2653e6e03b08f3b63d {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_d0d004a.WGS.T C3L-01836 CCRCC WGS tumor CPT0086880009 CPT0086880009.WholeGenome.RP-2158.bam 26326595995 BAM aligned CPTAC3 705e1c3c-7f56-4433-b8b6-aac36844aaeb 7cd6ce78039d2452b92b46d94642b7ef {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_d0d004a.WGS.T.hg38 C3L-01836 CCRCC WGS tumor CPT0086880009 39647b55-0a9b-4c6b-83e3-6810740239ce_wgs_gdc_realn.bam 78187110312 BAM harmonized CPTAC3 e843476a-adf0-4879-8aa5-29ecd51f854d c41abe63cb721341e10bf2685fd68767 {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_d0d004a.WXS.T C3L-01836 CCRCC WXS tumor CPT0086880009 CPT0086880009.WholeExome.RP-1303.bam 23858097221 BAM aligned CPTAC3 841b31a6-3923-4a45-a5e2-a6d91ba61821 4422b4d78b97e88ca80a14d00fb1e247 {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.DUP_d0d004a.WXS.T.hg38 C3L-01836 CCRCC WXS tumor CPT0086880009 39647b55-0a9b-4c6b-83e3-6810740239ce_wxs_gdc_realn.bam 33298026502 BAM harmonized CPTAC3 f6e9e0d0-018f-4d1e-9e11-2f2c5b0c2f76 1c78da04f61f3bbc18627034adaf67f0 {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01836.MethArray.Green.A C3L-01836 CCRCC Methylation_Array tissue_normal CPT0086890009 203027390029_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 78fb1b7a-7014-4667-90f1-8955462cbf39 0d4673d1e154b891a3c0d446095bd0de {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.MethArray.Green.T C3L-01836 CCRCC Methylation_Array tumor CPT0086870009 202184900127_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 0fc6c07f-eaec-44a6-bf1a-935915738899 2db1ccec5f2d3df09e51d561b7a3d8ee {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor"} -C3L-01836.MethArray.Red.A C3L-01836 CCRCC Methylation_Array tissue_normal CPT0086890009 203027390029_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 7e96551c-9ef4-4fa7-b344-67290ae7819d d22fd008570df3e705cdba8a4d817f17 {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.MethArray.Red.T C3L-01836 CCRCC Methylation_Array tumor CPT0086870009 202184900127_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 b68bf43a-b285-41a0-b622-39d35dce7808 bb1434cf2b7fb1ca45f8f75a600cb37a {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor"} -C3L-01836.miRNA-Seq.A.hg38 C3L-01836 CCRCC miRNA-Seq tissue_normal CPT0086890006 d67f5da3-1037-48ed-8a1d-9bfac58f4f3b_mirnaseq_gdc_realn.bam 181773195 BAM harmonized CPTAC3 32fdc8a1-413b-48c2-8c1a-ac97a1744d44 535949b8dd865b36650aaa65f2016293 {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.miRNA-Seq.S14_L008_R1.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086870006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L008_R1_001.unaln.bam 226158135 BAM S14_L008_R1 unaligned CPTAC3 8bc4d187-1dd6-4a76-aa51-f0e158ad0590 0b19fa6b6498dfd7e2bf31ad751c1a5c {"aliquot_tag": "ALQ_1fe28a0a", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01836.miRNA-Seq.S15_L005_R1.A C3L-01836 CCRCC miRNA-Seq tissue_normal CPT0086890006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L005_R1_001.unaln.bam 159544806 BAM S15_L005_R1 unaligned CPTAC3 d03167d7-e706-45ae-b4ac-1baea839b683 7804559e58b5a8f19a6e5a29a4b4b46d {"aliquot_tag": "ALQ_a0d2346b", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086870006 b3fdbe20-e876-440c-b8bb-0be8e6c9fe45_mirnaseq_gdc_realn.bam 251310992 BAM harmonized CPTAC3 dcebd156-4fda-4bf7-b632-beb00fa63347 16fd776ddbadca96c4cbe6d3acea6f5f {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor"} -C3L-01836.RNA-Seq.chimeric.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.chimeric.gdc_realn.bam 81264706 BAM chimeric harmonized CPTAC3 ea40b216-fba2-4f3e-bd18-b6086a86da5a cc5b4d497d40a66818d184845c1e563b {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.chimeric.gdc_realn.bam 31913672 BAM chimeric harmonized CPTAC3 9ec9fb52-0db0-4426-b1d5-509ee762a225 b3146a5629a2b1d1d1204849221b92b3 {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor"} -C3L-01836.RNA-Seq.genomic.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.genomic.gdc_realn.bam 6927250969 BAM genomic harmonized CPTAC3 21f809f4-0c1f-44f5-a979-f3c89699c9a8 8e0ccd68095e1c5a2518ae9de32693c8 {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.genomic.gdc_realn.bam 6926457769 BAM genomic harmonized CPTAC3 2285bc37-7e20-4da5-9548-79aec0eb6b2e 3b4107f7e4b870279fda63fae9850475 {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor"} -C3L-01836.RNA-Seq.S6_L002_R1.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R1_001.fastq.gz 3550419957 FASTQ S6_L002_R1 unaligned CPTAC3 2aeeecab-38f1-4ac1-b075-46ae5151bd1a 2694dbf6dcec1866f50ba4bcc74c3cc6 {"aliquot_tag": "ALQ_a0d2346b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.RNA-Seq.S6_L002_R2.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R2_001.fastq.gz 3690039175 FASTQ S6_L002_R2 unaligned CPTAC3 9c8f1419-35ba-4a6f-b41f-57473a598e05 0cdbc1a4dcae435ef2e5c269f9352657 {"aliquot_tag": "ALQ_a0d2346b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.RNA-Seq.S8_L006_R1.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R1_001.fastq.gz 3635126627 FASTQ S8_L006_R1 unaligned CPTAC3 a3e2839a-6453-485b-9a7d-e085f009d98a 21587f001b00b3d8bb52502ed93e85fb {"aliquot_tag": "ALQ_1fe28a0a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01836.RNA-Seq.S8_L006_R2.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R2_001.fastq.gz 3808781355 FASTQ S8_L006_R2 unaligned CPTAC3 9bcfe727-df26-44e6-89dd-9cd978ec3659 52964799643cff572b7aafa08ebc261a {"aliquot_tag": "ALQ_1fe28a0a", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01836.RNA-Seq.transcriptome.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.transcriptome.gdc_realn.bam 8595903548 BAM transcriptome harmonized CPTAC3 44feda4e-11bb-468a-9e70-dbefc99518d1 14746574bee23bcfc13fa6a48cebfa39 {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.transcriptome.gdc_realn.bam 10457787471 BAM transcriptome harmonized CPTAC3 b3180315-db0a-44fb-8a65-d77c1e5945cc dd84357d5a0bbb5dbb753d9b84e9a264 {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor"} -C3L-01836.WGS.A C3L-01836 CCRCC WGS tissue_normal CPT0086890009 CPT0086890009.WholeGenome.RP-1303.bam 57254202470 BAM aligned CPTAC3 579790bd-9932-4308-a476-2423456bd269 7c9fabafc9d0323aa52e8d540086848b {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.WGS.A.hg38 C3L-01836 CCRCC WGS tissue_normal CPT0086890009 79324909-5b7b-47bf-a656-6578f9b68759_wgs_gdc_realn.bam 83602021242 BAM harmonized CPTAC3 cddc27b7-2431-4f34-a52a-91a3268a227c 62cba56792cc52f9ab0c7feb5441123c {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.WGS.N C3L-01836 CCRCC WGS blood_normal CPT0087440002 CPT0087440002.WholeGenome.RP-1303.bam 76901474727 BAM aligned CPTAC3 4d179cd1-590e-403e-801b-b3a4489a0c05 3d8f681a58e7f4d3f5b57c6154d95d99 {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01836.WGS.N.hg38 C3L-01836 CCRCC WGS blood_normal CPT0087440002 d8619652-f544-49a1-83ca-bf3bdaaea21c_gdc_realn.bam 117651557299 BAM harmonized CPTAC3 79c2dd57-7f81-496a-b6cf-5e864f1690fd f60f8cc26b0c56aff484038c3745008b {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01836.WGS.T C3L-01836 CCRCC WGS tumor CPT0086870009 CPT0086870009.WholeGenome.RP-1303.bam 68546236862 BAM aligned CPTAC3 1a29b6aa-349b-48bb-9cfd-4bd8a680f2ee 6387b58e328a38e29301e29de1436689 {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor"} -C3L-01836.WGS.T.hg38 C3L-01836 CCRCC WGS tumor CPT0086870009 8ec46333-92ee-4b6a-9b5f-3cd668959bcb_gdc_realn.bam 102442208131 BAM harmonized CPTAC3 d462889b-a998-467a-8296-17046b7ab4ea b1edf15a6a716cf8da51d12563becd3f {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor"} -C3L-01836.WXS.A C3L-01836 CCRCC WXS tissue_normal CPT0086890009 CPT0086890009.WholeExome.RP-1303.bam 36508652073 BAM aligned CPTAC3 8703334b-55b5-4824-b182-c152c5e21cd4 d9de32c11ee420d21d14212ef52574ff {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.WXS.A.hg38 C3L-01836 CCRCC WXS tissue_normal CPT0086890009 79324909-5b7b-47bf-a656-6578f9b68759_wxs_gdc_realn.bam 50383903841 BAM harmonized CPTAC3 0393e507-06cc-4442-ae26-31291ad8bdee 22ac4d951c3fedadc179347039f7fc25 {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01836.WXS.N C3L-01836 CCRCC WXS blood_normal CPT0087440002 CPT0087440002.WholeExome.RP-1303.bam 39690857130 BAM aligned CPTAC3 a3fbead7-ec05-4d25-9845-69f6c96d3597 d1cfd6e84762f8d139c17d4a5ea68869 {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01836.WXS.N.hg38 C3L-01836 CCRCC WXS blood_normal CPT0087440002 d8619652-f544-49a1-83ca-bf3bdaaea21c_gdc_realn.bam 54929211870 BAM harmonized CPTAC3 247f32de-8c96-4795-9a98-7a342e6570ec 64de381b67e8460d6952fa565c726eea {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal"} -C3L-01836.WXS.T C3L-01836 CCRCC WXS tumor CPT0086870009 CPT0086870009.WholeExome.RP-1303.bam 36090835109 BAM aligned CPTAC3 75996363-a0cf-4d94-87c0-ffa5c2005fbf fdfff1915210bf8cd0c4ba0f4ba1ea53 {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor"} -C3L-01836.WXS.T.hg38 C3L-01836 CCRCC WXS tumor CPT0086870009 8ec46333-92ee-4b6a-9b5f-3cd668959bcb_gdc_realn.bam 49992051960 BAM harmonized CPTAC3 c889a7bb-fcd6-4246-94a8-324b1d86ef07 9b758db4fdbd1f793dd570dba1b22083 {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor"} -C3L-01838.MethArray.Green.T C3L-01838 LSCC Methylation_Array tumor CPT0091820009 202234380058_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1c79268e-2033-4b85-9641-002a3087b56f 9cd2bd200b0e85b7b327e243708ce66e {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor"} -C3L-01838.MethArray.Red.T C3L-01838 LSCC Methylation_Array tumor CPT0091820009 202234380058_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 2af5d015-67e8-4ae1-821a-0a42e719e528 d8c64a670bf005e60bbaf89394fcd951 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor"} -C3L-01838.miRNA-Seq.S3_L006_R1.T C3L-01838 LSCC miRNA-Seq tumor CPT0091820006 180828_UNC32-K00270_0112_AHWTLNBBXX_GGCTAC_S3_L006_R1_001.unaln.bam 233166935 BAM S3_L006_R1 unaligned CPTAC3 d2792c66-ec60-4dc7-b24f-75f62d3e72e8 a36d72d72ad2417bd352dc6bb64d3360 {"aliquot_tag": "ALQ_de0f3b6a", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01838.miRNA-Seq.T.hg38 C3L-01838 LSCC miRNA-Seq tumor CPT0091820006 f349a9e2-4d76-458c-8889-4ba8d4baadbc_mirnaseq_gdc_realn.bam 262973659 BAM harmonized CPTAC3 026ec557-4962-4393-91b6-fee194896444 985ce00a1285d7f5d785102a8215ed54 {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor"} -C3L-01838.RNA-Seq.chimeric.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.chimeric.gdc_realn.bam 53299158 BAM chimeric harmonized CPTAC3 4cb42143-9348-4ce2-99fb-84b00d1c6e35 3112735c2858f99ccf5cb88ad50c88be {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor"} -C3L-01838.RNA-Seq.genomic.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.genomic.gdc_realn.bam 10812141007 BAM genomic harmonized CPTAC3 aabba18e-8308-4a90-8f92-355d3bd9f299 51c6b39fc144d62ae745c943beeb378f {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor"} -C3L-01838.RNA-Seq.S8_L008_R1.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4492368263 FASTQ S8_L008_R1 unaligned CPTAC3 ae3a8cb3-0eee-4094-a16e-f943a1c700ea 409c103b9709861f7d70a0965529a851 {"aliquot_tag": "ALQ_de0f3b6a", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01838.RNA-Seq.S8_L008_R2.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 5173657114 FASTQ S8_L008_R2 unaligned CPTAC3 9a365c54-2bdb-472a-9800-389b12714b78 cdce14b60208e7f64ed4cc5cebee537e {"aliquot_tag": "ALQ_de0f3b6a", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01838.RNA-Seq.transcriptome.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.transcriptome.gdc_realn.bam 13325369178 BAM transcriptome harmonized CPTAC3 70954a78-d547-430c-a617-0106ad06674d b21aab8d2e1fb99dd0f47930a782f2e8 {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor"} -C3L-01838.WGS.N C3L-01838 LSCC WGS blood_normal CPT0093670002 CPT0093670002.WholeGenome.RP-1303.bam 81248814771 BAM aligned CPTAC3 fcd4cd9a-1955-45d4-b3d2-55fc58e4f675 00cc35627c266b97b1377fa4041561a3 {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01838.WGS.N.hg38 C3L-01838 LSCC WGS blood_normal CPT0093670002 c4403a57-0f50-47aa-8620-5271d576d48b_wgs_gdc_realn.bam 120173391896 BAM harmonized CPTAC3 803648bc-6df2-4e23-a5aa-16f4425989e8 97826738d87ca00e8eff5228afcd5eb5 {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01838.WGS.T C3L-01838 LSCC WGS tumor CPT0091820009 CPT0091820009.WholeGenome.RP-1303.bam 60802840335 BAM aligned CPTAC3 7fdbb7c0-e01d-47ca-9d3d-dc55d55a1a72 448af82b919ef1e3114d6bbb9355a76e {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor"} -C3L-01838.WGS.T.hg38 C3L-01838 LSCC WGS tumor CPT0091820009 1860169f-3c25-44c2-b9fd-6349950c3dc8_wgs_gdc_realn.bam 89892819518 BAM harmonized CPTAC3 26bf5415-148f-4c56-ab0f-42a7b68c8cde 838c9a13d485c5771f53e76778fa2608 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor"} -C3L-01838.WXS.N C3L-01838 LSCC WXS blood_normal CPT0093670002 CPT0093670002.WholeExome.RP-1303.bam 43133249661 BAM aligned CPTAC3 681808b0-97bb-4e34-a313-2af14dbb0bc9 9c93f3a16b12e0096a98bc50e08ec7cf {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01838.WXS.N.hg38 C3L-01838 LSCC WXS blood_normal CPT0093670002 c4403a57-0f50-47aa-8620-5271d576d48b_wxs_gdc_realn.bam 58339632345 BAM harmonized CPTAC3 a0fdf089-7e23-4c80-9512-fac6fa5d0f88 168aed7b8e6801bdc57b06da1ad7f58b {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01838.WXS.T C3L-01838 LSCC WXS tumor CPT0091820009 CPT0091820009.WholeExome.RP-1303.bam 44183316114 BAM aligned CPTAC3 36ec7bb1-8d1b-4cef-90d9-186cb8b52162 7d7654720c1f3a9d9185ed9c70b9d808 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor"} -C3L-01838.WXS.T.hg38 C3L-01838 LSCC WXS tumor CPT0091820009 1860169f-3c25-44c2-b9fd-6349950c3dc8_wxs_gdc_realn.bam 60706591081 BAM harmonized CPTAC3 33238c06-e075-4303-a204-659c4c9971bd 81c1e3d8f28409f19f70abeb5c765192 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor"} -C3L-01839.MethArray.Green.T C3L-01839 GBM Methylation_Array tumor CPT0092060009 202234360028_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 96d4e496-06c9-4c7b-b8f6-76bb65d10f51 396a7db95220a8694a5528a29823d287 {"aliquot_tag": "ALQ_668b18cb", "gdc_sample_type": "Primary Tumor"} -C3L-01839.MethArray.Red.T C3L-01839 GBM Methylation_Array tumor CPT0092060009 202234360028_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 8506d6b0-cd37-47e6-a41e-5e61ee65e347 ea0ff1bf01d61598563417ff4efc5eec {"aliquot_tag": "ALQ_668b18cb", "gdc_sample_type": "Primary Tumor"} -C3L-01840.MethArray.Green.T C3L-01840 UCEC Methylation_Array tumor CPT0091990009 202234360025_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 52a6aba9-c755-4059-8dbd-eb1b71fc37ce 80dd7960a727f464931ddb5b80481f4f {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor"} -C3L-01840.MethArray.Red.T C3L-01840 UCEC Methylation_Array tumor CPT0091990009 202234360025_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 1b77be27-d938-4d22-8275-1538bcd305b3 a1b445701dcac1006189f4942e21e61c {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor"} -C3L-01840.miRNA-Seq.S6_L006_R1.T C3L-01840 UCEC miRNA-Seq tumor CPT0091990006 180828_UNC32-K00270_0112_AHWTLNBBXX_AGTTCC_S6_L006_R1_001.unaln.bam 225668641 BAM S6_L006_R1 unaligned CPTAC3 7616cd16-5a17-44a5-a524-72a5bf2f4c5c a0d45909240f92319d4a5ed52332e2d7 {"aliquot_tag": "ALQ_6283d9de", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01840.miRNA-Seq.T.hg38 C3L-01840 UCEC miRNA-Seq tumor CPT0091990006 253e0dee-58fa-4e26-81cd-1368ea66d9b6_mirnaseq_gdc_realn.bam 247236043 BAM harmonized CPTAC3 5a025ce8-5b98-400b-85b7-96c9113f0a9e 1447808b271533bced7c594e245426d9 {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.chimeric.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.chimeric.gdc_realn.bam 35425210 BAM chimeric harmonized CPTAC3 3331c1f6-20b6-4e95-849b-f81497ef5b73 5d7da8a4a3f116b99d48a6d89729bd4e {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.chimeric.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.chimeric.gdc_realn.bam 301898505 BAM chimeric harmonized CPTAC3 dba5816f-93e9-4b59-a6ff-ce7fdabc34e8 a27bb05b385486f92cc782a7d48f3f0f {"aliquot_tag": "ALQ_eb2dfb3a", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.genomic.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.genomic.gdc_realn.bam 12691718143 BAM genomic harmonized CPTAC3 fc92c486-a111-4c25-9b77-f23185acc501 23a46d513d0ab3231de26b772855325a {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.genomic.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.genomic.gdc_realn.bam 12205925575 BAM genomic harmonized CPTAC3 f8bb1dcb-08bd-4ec1-be7e-6324b951960b 8befb16ab3371072f24020b862834047 {"aliquot_tag": "ALQ_eb2dfb3a", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.S2_L007_R1.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R1_001.fastq.gz 4630240820 FASTQ S2_L007_R1 unaligned CPTAC3 0453fd6a-3eb4-45d5-95c6-85f9496c7816 1699f648db9048e19858ab1cc604bbdb {"aliquot_tag": "ALQ_6283d9de", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.S2_L007_R2.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R2_001.fastq.gz 4980375095 FASTQ S2_L007_R2 unaligned CPTAC3 c597fc23-4760-408f-822f-6ae417004de0 b86ab7726dd458fb446f3891c09c963e {"aliquot_tag": "ALQ_6283d9de", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.S69_R1.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R1_001.fastq.gz 7209610000 FASTQ S69_R1 unaligned CPTAC3 79d96fc6-28e8-4eec-9bb2-f63b5f8bb671 c47b389172290554f7db21b6e4813528 {"aliquot_tag": "ALQ_eb2dfb3a", "sample": "S69", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.S69_R2.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R2_001.fastq.gz 7494257986 FASTQ S69_R2 unaligned CPTAC3 75d39f00-6ffd-48ac-a597-817d1d48a87f fa137b763a241fb7f7dce97388fb2236 {"aliquot_tag": "ALQ_eb2dfb3a", "sample": "S69", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.transcriptome.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.transcriptome.gdc_realn.bam 10193459073 BAM transcriptome harmonized CPTAC3 c782b126-d765-4f89-8c6f-6be6feb9ffb3 daf35b8712a81718983b7fd828c87c43 {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor"} -C3L-01840.RNA-Seq.transcriptome.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.transcriptome.gdc_realn.bam 6122928045 BAM transcriptome harmonized CPTAC3 8f24fc44-4fb9-4662-8d87-df3f11a7a761 9de31fd28742fb3f6bc00df2c26c384d {"aliquot_tag": "ALQ_eb2dfb3a", "gdc_sample_type": "Primary Tumor"} -C3L-01840.WGS.N C3L-01840 UCEC WGS blood_normal CPT0093700002 CPT0093700002.WholeGenome.RP-1303.bam 59905144586 BAM aligned CPTAC3 31866f3a-8bf4-4379-8f0d-92bb5e249fef 33ab0d1b47f7e465540b210486eca9be {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01840.WGS.N.hg38 C3L-01840 UCEC WGS blood_normal CPT0093700002 bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wgs_gdc_realn.bam 87572684580 BAM harmonized CPTAC3 832dd017-471c-48ab-8b81-1d4ee65f4a4b 2aabdb017a96cf672dbb2c45b6cd9806 {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01840.WGS.T C3L-01840 UCEC WGS tumor CPT0091990009 CPT0091990009.WholeGenome.RP-1303.bam 59655339206 BAM aligned CPTAC3 7d35187b-5f0f-476b-bd17-7a53d67cde34 7cd2f8ae588fc2758b7c457673ede1fe {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor"} -C3L-01840.WGS.T.hg38 C3L-01840 UCEC WGS tumor CPT0091990009 b5e15343-b733-4c14-87d8-161b1e37c3be_wgs_gdc_realn.bam 87308457395 BAM harmonized CPTAC3 810231c7-c588-4775-9973-a2356a1ddfc2 5204b24b8952c3306e88d21c8307a825 {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor"} -C3L-01840.WXS.N C3L-01840 UCEC WXS blood_normal CPT0093700002 CPT0093700002.WholeExome.RP-1303.bam 27219695857 BAM aligned CPTAC3 f15d6774-ad3d-4381-9a40-364396208dd5 56f0d92631593c7e96c14ea14e67218a {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01840.WXS.N.hg38 C3L-01840 UCEC WXS blood_normal CPT0093700002 bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wxs_gdc_realn.bam 36252189767 BAM harmonized CPTAC3 4774dc1a-c467-46bc-8fd5-57b71339bb49 bfccad9d14f542bb7638985d64c5dd37 {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01840.WXS.T C3L-01840 UCEC WXS tumor CPT0091990009 CPT0091990009.WholeExome.RP-1303.bam 40383125982 BAM aligned CPTAC3 7bda8c3f-4d26-45f5-921e-4014d62112dd 0a004ff8a2e75227c9716822e52bbc94 {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor"} -C3L-01840.WXS.T.hg38 C3L-01840 UCEC WXS tumor CPT0091990009 b5e15343-b733-4c14-87d8-161b1e37c3be_wxs_gdc_realn.bam 56398414014 BAM harmonized CPTAC3 7f428eb9-3cb6-45b0-bdac-3391556ecacd 3a285e41af7998f357d3beff2a3e4d58 {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_4cc1a30.miRNA-Seq.S9_L001_R1.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092280006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTAGCT_S9_L001_R1_001.unaln.bam 315870709 BAM S9_L001_R1 unaligned CPTAC3 73a38291-2a86-46da-9627-836d76c79ce3 5e8b3d138cf8a1047821f36cb684024b {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_4cc1a30.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092280006 cb298910-251c-4263-aa0c-954590b3b533_mirnaseq_gdc_realn.bam 348131454 BAM harmonized CPTAC3 6ebeb278-c9b7-46dc-965b-6e4f61631b1c b6744e6383f4d86609ea39fe12a4b32f {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_4cc1a30.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.chimeric.gdc_realn.bam 51456700 BAM chimeric harmonized CPTAC3 2cc3ac24-cf16-4234-baa9-ebb44e16635b 8e94fe45b6cdef4870c65dccd3ce06cd {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_4cc1a30.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.genomic.gdc_realn.bam 7454009525 BAM genomic harmonized CPTAC3 02b7d40f-e69f-4744-b5c6-ac3ad03db668 5875a1db7d51a10f6af48dfc6000c3d9 {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_4cc1a30.RNA-Seq.S31_L008_R1.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R1_001.fastq.gz 3603210624 FASTQ S31_L008_R1 unaligned CPTAC3 e05ca40e-28a6-4ed3-acad-dcaccee06f9f 6f494948de699e7f20d4e4a7b5f325d8 {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_4cc1a30.RNA-Seq.S31_L008_R2.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R2_001.fastq.gz 4096244295 FASTQ S31_L008_R2 unaligned CPTAC3 bcfffcc7-8d6f-4195-825e-48d10cbc2ad5 4e5d8dd50c0a9d7040a08709edc8b995 {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_4cc1a30.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.transcriptome.gdc_realn.bam 9642037744 BAM transcriptome harmonized CPTAC3 f9fcb7ca-55a9-4a5e-9ef2-d1a9f25802fb 55b19746d6375beed05ece55914b6bcf {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_6f5f9fc5.MethArray.Green.T C3L-01861 CCRCC Methylation_Array tumor CPT0092300009 204367460011_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 53730193-2e1b-4f6b-abeb-e59fd4f35588 53b2fb80eafb45d760d6a1e94c774b7f {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_6f5f9fc5.MethArray.Red.T C3L-01861 CCRCC Methylation_Array tumor CPT0092300009 204367460011_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 260c9ecb-f5a1-4371-af85-6fb8e6417def b4ad457112d9240ce8e117dc00eb8cc4 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_6f5f9fc5.WGS.T C3L-01861 CCRCC WGS tumor CPT0092300009 CPT0092300009.WholeGenome.RP-2158.bam 23790404592 BAM aligned CPTAC3 64d854fe-f993-4254-8a8b-fa1a9b762494 bec5f519120672a4fc03b0a1d91dceef {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_6f5f9fc5.WGS.T.hg38 C3L-01861 CCRCC WGS tumor CPT0092300009 6eea291f-724e-4891-a6d7-a1244823d6c8_wgs_gdc_realn.bam 68767554170 BAM harmonized CPTAC3 d744d7f9-95ca-4a9b-808f-eac7bcccdb1c 3708eb9ef0cc770a93ad2580ae0a82d5 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_6f5f9fc5.WXS.T C3L-01861 CCRCC WXS tumor CPT0092300009 CPT0092300009.WholeExome.RP-1303.bam 22750019576 BAM aligned CPTAC3 fcf5c23e-6d46-4394-9762-2987efcd5b53 5e58ad39b8a0d214d840febdd6e1e729 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_6f5f9fc5.WXS.T.hg38 C3L-01861 CCRCC WXS tumor CPT0092300009 6eea291f-724e-4891-a6d7-a1244823d6c8_wxs_gdc_realn.bam 31344431338 BAM harmonized CPTAC3 4948a696-6c97-40ad-9a89-88797d538070 e4763062d80a9a6af6fb65ad1dbb68b2 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_947307a1.MethArray.Green.T C3L-01861 CCRCC Methylation_Array tumor CPT0092280009 204372030070_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c6896b39-cccf-4a62-a074-5f136c62596b 13eca5262159d97016c3a58a7bd814c0 {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_947307a1.MethArray.Red.T C3L-01861 CCRCC Methylation_Array tumor CPT0092280009 204372030070_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 f739728a-d1f8-4cb2-9b81-718b8766df47 cc9b62d0a073e77cb303ea408811dfe9 {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_947307a1.WGS.T C3L-01861 CCRCC WGS tumor CPT0092280009 CPT0092280009.WholeGenome.RP-2158.bam 25385069979 BAM aligned CPTAC3 b77d317c-3a68-439e-bcce-1ad8b64403d2 004102c5ffb02de5a91db37a65548731 {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_947307a1.WGS.T.hg38 C3L-01861 CCRCC WGS tumor CPT0092280009 5c4f72e3-5b4e-4abb-9db7-82f0cacab835_wgs_gdc_realn.bam 74010938863 BAM harmonized CPTAC3 32af36fc-90ac-4133-abd0-436f6e689515 9ddf8f430b13e30ebce3db2a8d2afefd {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_947307a1.WXS.T C3L-01861 CCRCC WXS tumor CPT0092280009 CPT0092280009.WholeExome.RP-1303.bam 17401476180 BAM aligned CPTAC3 23775c6b-7f49-4893-9920-202bce04f5ca 5ea43ea4fe23e6fe069ef89f906997bf {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_947307a1.WXS.T.hg38 C3L-01861 CCRCC WXS tumor CPT0092280009 5c4f72e3-5b4e-4abb-9db7-82f0cacab835_wxs_gdc_realn.bam 24174719767 BAM harmonized CPTAC3 7fac0c5e-9201-483b-be8b-a7591e07c0b2 cfcb213808c65a220492507171a464ad {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_ffe08254.miRNA-Seq.S10_L001_R1.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092300006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L001_R1_001.unaln.bam 234550563 BAM S10_L001_R1 unaligned CPTAC3 cc0a8d45-43d8-4734-a275-2e8e7d5d9fa3 fea748c721e314f9d1e401311c0d1d38 {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_ffe08254.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092300006 6ea257b2-6e28-40b8-8560-9fda136b89ad_mirnaseq_gdc_realn.bam 259073209 BAM harmonized CPTAC3 11eb2f89-9378-4184-8b05-695dc9cc9d79 bba8757e736b63b106216ffc3ad9aa2b {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_ffe08254.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.chimeric.gdc_realn.bam 44867305 BAM chimeric harmonized CPTAC3 7186d3da-6de8-4435-986e-78a98b3b094d 208ab766bc70233e9249eb56a51bb861 {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_ffe08254.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.genomic.gdc_realn.bam 7872779832 BAM genomic harmonized CPTAC3 40884817-f053-4fc4-9811-69cbc3e4e3e8 b9522af5982f6f24d458041c8f2c2e0d {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_ffe08254.RNA-Seq.S30_L008_R1.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R1_001.fastq.gz 3568920690 FASTQ S30_L008_R1 unaligned CPTAC3 1ad2341c-5b62-4ec7-b0da-7b417d931840 61fcdc951d6b7dbff76b9e69546b149b {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_ffe08254.RNA-Seq.S30_L008_R2.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R2_001.fastq.gz 4321608798 FASTQ S30_L008_R2 unaligned CPTAC3 0d63abc1-54c4-447f-8687-683eeec387a5 dc6ecc722b0d1958c152c1f670e12a3e {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01861.DUP_ffe08254.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.transcriptome.gdc_realn.bam 9172557324 BAM transcriptome harmonized CPTAC3 25aad822-7ac0-4d62-9fd1-794852401f15 e7b159c232d657a11ddc08edd653fad8 {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3L-01861.MethArray.Green.A C3L-01861 CCRCC Methylation_Array tissue_normal CPT0092310009 204930630107_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9fdb30f0-efe8-4aa7-803a-0b52259b3077 d803622eea9ab01be29030547ff0e6ba {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.MethArray.Green.T C3L-01861 CCRCC Methylation_Array tumor CPT0092290008 202234370091_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e29fb20a-4aa3-4941-a00f-bff79be1f5af 742add2ac72655365caba9dea3f88533 {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor"} -C3L-01861.MethArray.Red.A C3L-01861 CCRCC Methylation_Array tissue_normal CPT0092310009 204930630107_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 42953785-ebdc-49de-81a6-8f6b5b68eb4f a46165af4a76a26e8d8b3e30e0ec683c {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.MethArray.Red.T C3L-01861 CCRCC Methylation_Array tumor CPT0092290008 202234370091_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 6f57a2a7-e892-46ab-9465-536de9d0e0e6 21d0d3455617582cb62608b44052303e {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor"} -C3L-01861.miRNA-Seq.A.hg38 C3L-01861 CCRCC miRNA-Seq tissue_normal CPT0092310006 c78059d0-f010-4e55-bdb4-7a8c7cb61d65_mirnaseq_gdc_realn.bam 215400882 BAM harmonized CPTAC3 b8170273-f602-4c81-8520-00b4d711152a ea3de70640c304bf2a6e78194526c270 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.miRNA-Seq.S19_L005_R1.A C3L-01861 CCRCC miRNA-Seq tissue_normal CPT0092310006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L005_R1_001.unaln.bam 194998969 BAM S19_L005_R1 unaligned CPTAC3 97d610c5-3236-48ac-80d0-a9d6bd344354 c94197ab089cdaca4229910aca7280c5 {"aliquot_tag": "ALQ_c280abe4", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.miRNA-Seq.S26_L003_R1.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092290005 181119_UNC31-K00269_0165_AH27WCBBXY_CGATGT_S26_L003_R1_001.unaln.bam 270625391 BAM S26_L003_R1 unaligned CPTAC3 ad88944a-abb8-4ac6-825a-88fdf2daf161 93a13168d557355dca01c02fcd9d2dc9 {"aliquot_tag": "ALQ_a0a5623a", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01861.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092290005 38be969b-47f9-4081-b857-ddcb771518ff_mirnaseq_gdc_realn.bam 300992995 BAM harmonized CPTAC3 d81c620c-2331-456d-bb55-c816b9d72785 8a3f3ca7c80554380aeb3cbaa6b72635 {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor"} -C3L-01861.RNA-Seq.chimeric.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.chimeric.gdc_realn.bam 93740365 BAM chimeric harmonized CPTAC3 3e81d439-6672-4a2c-8b7e-4c32421257e3 49e976c037d9bc63eb404e4cd32051f9 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.chimeric.gdc_realn.bam 39528028 BAM chimeric harmonized CPTAC3 662ad4f1-9e68-4347-b9f2-4aef9a45ce9c 26869220a1d4662dc4c70a7d57fe2bfa {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor"} -C3L-01861.RNA-Seq.genomic.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.genomic.gdc_realn.bam 8157494376 BAM genomic harmonized CPTAC3 bb2907c6-d8e6-4caa-9ef2-863a585c902b 5f9da83d37a9d52dc447d416d9d0d545 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.genomic.gdc_realn.bam 9538428600 BAM genomic harmonized CPTAC3 cdd14852-a7be-4c3f-a0e7-0f65b34e01e5 1e133bb29c4c9d532f4c894c99ebe6f7 {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor"} -C3L-01861.RNA-Seq.S2_L001_R1.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R1_001.fastq.gz 4271755155 FASTQ S2_L001_R1 unaligned CPTAC3 2ecc3a28-7e0e-4680-9f69-77060ad2835f 0de5c2276244549a54adf7ac155dd629 {"aliquot_tag": "ALQ_c280abe4", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.RNA-Seq.S2_L001_R2.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R2_001.fastq.gz 4468740133 FASTQ S2_L001_R2 unaligned CPTAC3 7ea16c75-8f3d-40ac-83cb-eb1b8103e5ba 4255d648ff6836ed5ea677abcaa57074 {"aliquot_tag": "ALQ_c280abe4", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.RNA-Seq.S49_L004_R1.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R1_001.fastq.gz 4425587923 FASTQ S49_L004_R1 unaligned CPTAC3 dad117ab-2b82-4007-8738-65dd691734bc 5191b5d2dcb74677829ba66f04c61265 {"aliquot_tag": "ALQ_a0a5623a", "sample": "S49", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01861.RNA-Seq.S49_L004_R2.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R2_001.fastq.gz 4907942717 FASTQ S49_L004_R2 unaligned CPTAC3 f0a3c65b-b19d-4dd2-b374-45f0bc1056dd def617a813991ec92a4fe62a3da74d31 {"aliquot_tag": "ALQ_a0a5623a", "sample": "S49", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01861.RNA-Seq.transcriptome.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.transcriptome.gdc_realn.bam 10321800248 BAM transcriptome harmonized CPTAC3 ac7769d6-7148-4c7a-9f31-0e4bfcf7d843 eee8aa13fb9f396ef8a9180f43dd47c3 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.transcriptome.gdc_realn.bam 10900309173 BAM transcriptome harmonized CPTAC3 722b81c2-4f10-4f15-8789-20cb3e4cb239 b64f0ddcfa4ac3275108261da84337d6 {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor"} -C3L-01861.WGS.A C3L-01861 CCRCC WGS tissue_normal CPT0092310009 CPT0092310009.WholeGenome.RP-1303.bam 63933194648 BAM aligned CPTAC3 bd6271df-8a20-4b2e-811d-47bbecfd7693 ca6e520e348905ff61f085e8a7ad007c {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.WGS.A.hg38 C3L-01861 CCRCC WGS tissue_normal CPT0092310009 12053926-97e3-4dab-ba27-56a85edfa7ff_wgs_gdc_realn.bam 92682235660 BAM harmonized CPTAC3 bdd3b337-fe3e-4276-9aa3-2bc249cbca53 508399c4e8993fa27288992ec56c9316 {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.WGS.N C3L-01861 CCRCC WGS blood_normal CPT0093770002 CPT0093770002.WholeGenome.RP-1303.bam 68324502586 BAM aligned CPTAC3 783791b8-e6ad-4a3e-b5fd-69fe58e77d56 60a927a41946e1dbc75aa2ffbff704e3 {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-01861.WGS.N.hg38 C3L-01861 CCRCC WGS blood_normal CPT0093770002 f912ddc2-0ba2-4be5-aad6-aa64ad5fa1b4_wgs_gdc_realn.bam 101514670414 BAM harmonized CPTAC3 1445162e-5fb8-408f-825e-2e75513b98f5 2e2de7192c2173b2c4e0809ae5d85642 {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-01861.WGS.T C3L-01861 CCRCC WGS tumor CPT0092290008 CPT0092290008.WholeGenome.RP-1303.bam 66852587518 BAM aligned CPTAC3 bdf302fe-63f2-4a75-b6d4-bf71afae7ab9 7b9c64b5c79cdf247a4b47d4aec39075 {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor"} -C3L-01861.WGS.T.hg38 C3L-01861 CCRCC WGS tumor CPT0092290008 b35c7cca-5e9e-4445-8b60-2427084ce2b7_wgs_gdc_realn.bam 97659798132 BAM harmonized CPTAC3 cfe57b0d-4483-421e-9820-cf02e9269548 579ecab3514d3a0cb1c15f44633fc14b {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor"} -C3L-01861.WXS.A C3L-01861 CCRCC WXS tissue_normal CPT0092310009 CPT0092310009.WholeExome.RP-1303.bam 55192751095 BAM aligned CPTAC3 120b7b9c-91da-4504-a5fb-d8256208615d 367ab4ccc2fb52bbeeba8ff8f88648c8 {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.WXS.A.hg38 C3L-01861 CCRCC WXS tissue_normal CPT0092310009 12053926-97e3-4dab-ba27-56a85edfa7ff_wxs_gdc_realn.bam 74920230427 BAM harmonized CPTAC3 8cfd084b-29ed-4b39-bbf9-721ee40a728b d9528608c87c84c754bf0ff648b9339e {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01861.WXS.N C3L-01861 CCRCC WXS blood_normal CPT0093770002 CPT0093770002.WholeExome.RP-1303.bam 37631380019 BAM aligned CPTAC3 80f3070d-1937-4b77-b4c0-7ba621b18f1e 28bd80f0d20f065087005d4598c3815c {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-01861.WXS.N.hg38 C3L-01861 CCRCC WXS blood_normal CPT0093770002 f912ddc2-0ba2-4be5-aad6-aa64ad5fa1b4_wxs_gdc_realn.bam 51585129445 BAM harmonized CPTAC3 3cc6f8b6-730c-4a45-8475-4f6818ee920b 02f29ea6f8f5d613ae09a44f2570b3c3 {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-01861.WXS.T C3L-01861 CCRCC WXS tumor CPT0092290008 CPT0092290008.WholeExome.RP-1303.bam 37674706888 BAM aligned CPTAC3 0c01bc5e-6fa1-4692-ae47-2f027a0cafa2 4907d449efa78445c462ace2df16638b {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor"} -C3L-01861.WXS.T.hg38 C3L-01861 CCRCC WXS tumor CPT0092290008 b35c7cca-5e9e-4445-8b60-2427084ce2b7_wxs_gdc_realn.bam 52960795936 BAM harmonized CPTAC3 eca71105-fdc4-4bd6-957e-ab0bd45d633a ba01eb183415e6d5c377a65d0050078e {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor"} -C3L-01862.MethArray.Green.T C3L-01862 LUAD Methylation_Array tumor CPT0092530009 202234370079_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e848e74e-5a73-4f4a-a916-b33930a82636 9592ec24abeeb545c4f7c364bb3f6d45 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor"} -C3L-01862.MethArray.Red.T C3L-01862 LUAD Methylation_Array tumor CPT0092530009 202234370079_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d7de1cac-0c4f-4e22-8c58-872d137e44fd 63e1a73037da8bad1150b7669233cda8 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor"} -C3L-01862.miRNA-Seq.S12_L007_R1.T C3L-01862 LUAD miRNA-Seq tumor CPT0092530006 180724_UNC32-K00270_0106_BHWK3MBBXX_CCAACA_S12_L007_R1_001.unaln.bam 235287641 BAM S12_L007_R1 unaligned CPTAC3 2ffff661-1587-474c-a731-2b9cf09022f4 1f51102365f8c7893268f63d1ff51c72 {"aliquot_tag": "ALQ_6e191b99", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01862.miRNA-Seq.T.hg38 C3L-01862 LUAD miRNA-Seq tumor CPT0092530006 ececbc0c-233e-484d-ae47-d4470a3c1ca9_mirnaseq_gdc_realn.bam 255210704 BAM harmonized CPTAC3 2329767b-6ef7-472d-bbfc-6dc9e88ffbb7 4b2e392752a71270b9f43b7a10caca28 {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor"} -C3L-01862.RNA-Seq.chimeric.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.chimeric.gdc_realn.bam 36820813 BAM chimeric harmonized CPTAC3 d9addc7d-ae44-4f76-af16-e46988b7af99 51b92a40cec2ea9689084bc805c76b3e {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor"} -C3L-01862.RNA-Seq.genomic.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.genomic.gdc_realn.bam 8965761700 BAM genomic harmonized CPTAC3 ed0e9d1c-9308-46d1-b61d-85674973c0c0 7a9c73e663fd926e81be2ab36da69669 {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor"} -C3L-01862.RNA-Seq.S19_L005_R1.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 4120978178 FASTQ S19_L005_R1 unaligned CPTAC3 4219c6a3-ebfd-44b3-9d38-201568490256 dad67421df5aa53e348b262a9e5b23a7 {"aliquot_tag": "ALQ_6e191b99", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01862.RNA-Seq.S19_L005_R2.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4548879892 FASTQ S19_L005_R2 unaligned CPTAC3 465e52f3-5a50-4f1e-808a-6778c1c318d5 aa50cc07d36a5f0c62e78c0cea5a6eef {"aliquot_tag": "ALQ_6e191b99", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01862.RNA-Seq.transcriptome.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.transcriptome.gdc_realn.bam 11340324515 BAM transcriptome harmonized CPTAC3 bb608a20-80f0-4e79-9424-21013332753c b60bf4c2ce7f9ae7911b9c227d290750 {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor"} -C3L-01862.WGS.N C3L-01862 LUAD WGS blood_normal CPT0093710002 CPT0093710002.WholeGenome.RP-1303.bam 58849921309 BAM aligned CPTAC3 b17ae2c3-1c0f-408a-97b5-912d614bf173 b2ed7f7b2f9ade022a26eaafbfa0a00f {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01862.WGS.N.hg38 C3L-01862 LUAD WGS blood_normal CPT0093710002 57736f53-612c-4e10-a5f2-2bb931276189_wgs_gdc_realn.bam 86753067559 BAM harmonized CPTAC3 a4c24fbd-b085-4bbd-b8d1-068c9eb717aa 9dfe75789bd28fcba3eca63737bb67c5 {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01862.WGS.T C3L-01862 LUAD WGS tumor CPT0092530009 CPT0092530009.WholeGenome.RP-1303.bam 63378526865 BAM aligned CPTAC3 0fbb3ceb-3e6b-4ebb-8269-b0f54b71a7a3 2b959ae2936c017f779ea6b9a7a4520a {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor"} -C3L-01862.WGS.T.hg38 C3L-01862 LUAD WGS tumor CPT0092530009 fb3d8bc7-276c-4e3d-a25d-f45f8cacb57d_wgs_gdc_realn.bam 94849261597 BAM harmonized CPTAC3 06d683c0-4e34-4b3a-8267-45c25c2f77e8 273a5b175c2abf059225471ba977a726 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor"} -C3L-01862.WXS.N C3L-01862 LUAD WXS blood_normal CPT0093710002 CPT0093710002.WholeExome.RP-1303.bam 35082825490 BAM aligned CPTAC3 23d06b44-e152-4908-84b3-dc1b4ad0f436 1ef07b48360f36f18b1b0086cecf18ab {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01862.WXS.N.hg38 C3L-01862 LUAD WXS blood_normal CPT0093710002 57736f53-612c-4e10-a5f2-2bb931276189_wxs_gdc_realn.bam 46554500635 BAM harmonized CPTAC3 de85bf55-9dcb-4a92-b85b-218d58916de2 23cdbaedfe721c0f47512808fb4e2b47 {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01862.WXS.T C3L-01862 LUAD WXS tumor CPT0092530009 CPT0092530009.WholeExome.RP-1303.bam 28515107949 BAM aligned CPTAC3 7d3f7e24-3283-46f4-8c3b-7f885c74d3cc 3aee21b99ea46c66fd864ade7986f007 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor"} -C3L-01862.WXS.T.hg38 C3L-01862 LUAD WXS tumor CPT0092530009 fb3d8bc7-276c-4e3d-a25d-f45f8cacb57d_wxs_gdc_realn.bam 38665774426 BAM harmonized CPTAC3 181112d7-77a9-4439-b080-af2cdad07dd1 72dee14d942d453eb123b506bcacec0d {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor"} -C3L-01864.ADD_8ad89aa6.MethArray.Green.T C3L-01864 UCEC Methylation_Array tumor CPT0092860009 202234370086_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9053923b-97db-47b6-a689-68dcd46935e5 e7fe1190d307dfe9a39a1ae706669d20 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01864.ADD_8ad89aa6.MethArray.Red.T C3L-01864 UCEC Methylation_Array tumor CPT0092860009 202234370086_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 b72a0ee1-7d4f-4a0f-b222-896d4e27c81e aa3d3b9b41517299588021a6a31abcfd {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01864.ADD_8ad89aa6.WGS.T C3L-01864 UCEC WGS tumor CPT0092860009 CPT0092860009.WholeGenome.RP-1303.bam 66887616993 BAM aligned CPTAC3 1c9ccf54-f825-4b68-ad00-163ac120bdc7 a3f930ecceefabdaa55f1d4315926712 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01864.ADD_8ad89aa6.WGS.T.hg38 C3L-01864 UCEC WGS tumor CPT0092860009 31aa7828-c230-4711-a349-8bf53fd585a3_wgs_gdc_realn.bam 99867810467 BAM harmonized CPTAC3 4fce4f98-6af5-4951-98ad-86af45cf17ca 51109657b8a39074a5610e79fbb9ddb1 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01864.ADD_8ad89aa6.WXS.T C3L-01864 UCEC WXS tumor CPT0092860009 CPT0092860009.WholeExome.RP-1303.bam 49492814707 BAM aligned CPTAC3 06b1e0d9-a81e-4fc8-b99a-f44330cac9e7 42042f257a742cb5d10c5d1c10c7c168 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01864.ADD_8ad89aa6.WXS.T.hg38 C3L-01864 UCEC WXS tumor CPT0092860009 31aa7828-c230-4711-a349-8bf53fd585a3_wxs_gdc_realn.bam 67184302768 BAM harmonized CPTAC3 f931272e-d6b4-4528-9ae0-d0c0b4bf2607 188a5270182a447b69c9b2c7095b843d {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-01864.miRNA-Seq.S17_L007_R1.T C3L-01864 UCEC miRNA-Seq tumor CPT0092860006 180724_UNC32-K00270_0106_BHWK3MBBXX_GACGAC_S17_L007_R1_001.unaln.bam 250664341 BAM S17_L007_R1 unaligned CPTAC3 f971a0b1-88cb-41b0-a113-7bac19d2b90e d2660864ede4f24aeddbe03b1d96b2b1 {"aliquot_tag": "ALQ_1a678737", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01864.miRNA-Seq.T.hg38 C3L-01864 UCEC miRNA-Seq tumor CPT0092860006 da25a4de-2fe7-4937-9172-37a99df7da2f_mirnaseq_gdc_realn.bam 266255007 BAM harmonized CPTAC3 d8ed9995-3186-482b-85c4-3ae4b3f56cf1 2e9dfeaddd49491fb3eb562b67a275de {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.chimeric.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.chimeric.gdc_realn.bam 50344139 BAM chimeric harmonized CPTAC3 b28deb90-4d19-48ee-b78a-1b93b489e44d 884e9dd43e00291dd1d4256264190cfc {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.chimeric.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.chimeric.gdc_realn.bam 198100560 BAM chimeric harmonized CPTAC3 919cc0e6-205c-4f6a-bc5e-9598c91c4bb5 71766bd14491886ad501cb7b6e644d29 {"aliquot_tag": "ALQ_ac8d81ea", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.genomic.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.genomic.gdc_realn.bam 9784918294 BAM genomic harmonized CPTAC3 357c63dd-ecd1-49f6-8cfd-c5c9b6d877c5 1d033b6854eb9e1e9b1de35126b4c634 {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.genomic.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.genomic.gdc_realn.bam 10087932541 BAM genomic harmonized CPTAC3 16410db8-c28a-4a16-896e-ce6e490d5a97 e3a31dea13fa2f4850ea0e91b091bd5b {"aliquot_tag": "ALQ_ac8d81ea", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.S7_R1.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R1_001.fastq.gz 5945382344 FASTQ S7_R1 unaligned CPTAC3 747b9cc5-9795-488c-b15b-68c836c9c7a1 cf69aee1759d7053bb031a6ed55f1cb9 {"aliquot_tag": "ALQ_ac8d81ea", "sample": "S7", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.S7_R2.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R2_001.fastq.gz 6194710624 FASTQ S7_R2 unaligned CPTAC3 06e4023e-2f67-47f8-bfc1-c3c4048e9439 e37adee3309539f70472cc4382350f6c {"aliquot_tag": "ALQ_ac8d81ea", "sample": "S7", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.S9_L003_R1.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4601825908 FASTQ S9_L003_R1 unaligned CPTAC3 1e51c9a1-a6ee-41d5-b3bc-9b61f6615133 101c490bc789383adf71b8a5ed5b52cf {"aliquot_tag": "ALQ_1a678737", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.S9_L003_R2.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 5164853456 FASTQ S9_L003_R2 unaligned CPTAC3 4d4b982f-8785-4328-a444-2bd0a18f44bc d4d95800eeb9b06f7cff199b8a964a1f {"aliquot_tag": "ALQ_1a678737", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.transcriptome.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.transcriptome.gdc_realn.bam 13215413605 BAM transcriptome harmonized CPTAC3 c3f2efb3-b3e1-4413-b442-b8e18a64a105 1065bc3860760da80667e78e068e267d {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor"} -C3L-01864.RNA-Seq.transcriptome.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.transcriptome.gdc_realn.bam 5923225814 BAM transcriptome harmonized CPTAC3 4ab216eb-2070-460b-85d6-a8aae458bac2 58e7e89ea543b7368a90831a187afdca {"aliquot_tag": "ALQ_ac8d81ea", "gdc_sample_type": "Primary Tumor"} -C3L-01864.WGS.N C3L-01864 UCEC WGS blood_normal CPT0093840002 CPT0093840002.WholeGenome.RP-1303.bam 61379417141 BAM aligned CPTAC3 88ed8c9f-aea6-479b-a9ba-f8904ec7c833 46e843566813fbff4d46d0e0a4a68984 {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01864.WGS.N.hg38 C3L-01864 UCEC WGS blood_normal CPT0093840002 ebcd3c59-6e3a-4913-8bc4-50fe264a0f67_wgs_gdc_realn.bam 89371314010 BAM harmonized CPTAC3 bcbc24e7-469a-41ab-8589-f6481dcd15f6 9c649ac132e23f543b351da4a76c88e2 {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01864.WXS.N C3L-01864 UCEC WXS blood_normal CPT0093840002 CPT0093840002.WholeExome.RP-1303.bam 32526733430 BAM aligned CPTAC3 d93ada75-e013-4c14-9945-0a8dde071738 09a5b854eeb821aa15211636d5021587 {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01864.WXS.N.hg38 C3L-01864 UCEC WXS blood_normal CPT0093840002 ebcd3c59-6e3a-4913-8bc4-50fe264a0f67_wxs_gdc_realn.bam 44181681486 BAM harmonized CPTAC3 12f4261d-c0e1-4088-8f69-003acb306e5a 8c8ec4f147d1c4a1648bf011bb3a2d9a {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal"} -C3L-01865.MethArray.Green.A C3L-01865 CCRCC Methylation_Array tissue_normal CPT0392290006 205549610122_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 239350e6-b2c5-4672-8bcb-e13c4e094cd1 5a58e27eed41164e60b443bfcb24226f {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.MethArray.Green.T C3L-01865 CCRCC Methylation_Array tumor CPT0392260006 205589730117_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 01f3f3db-494e-4efa-b2cc-d54399d7fb15 e57e393956a4d5b43d31dfdb93380086 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor"} -C3L-01865.MethArray.Red.A C3L-01865 CCRCC Methylation_Array tissue_normal CPT0392290006 205549610122_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 a10b3844-4666-4a81-b133-08fbd32ebb60 4ae9ccef39955f6f3eb21ebca2332200 {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.MethArray.Red.T C3L-01865 CCRCC Methylation_Array tumor CPT0392260006 205589730117_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 079039ad-a3b1-47a3-a3fb-1cd8c7f10aab d815d3d5129e3575f855948c22d7d3fa {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor"} -C3L-01865.miRNA-Seq.A.hg38 C3L-01865 CCRCC miRNA-Seq tissue_normal CPT0392290009 83131548-9c7d-4f78-a54c-66276dae8545_mirnaseq_gdc_realn.bam 367302843 BAM harmonized CPTAC3 7048228b-e5a6-4780-a997-81a65b244571 662c14b8a0320a6f4a83248b5cafee8a {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.miRNA-Seq.S36_L002_R1.T C3L-01865 CCRCC miRNA-Seq tumor CPT0392260009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCCCGA_S36_L002_R1_001.unaln.bam 231692977 BAM S36_L002_R1 unaligned CPTAC3 8780f5ff-7010-45e0-ad0e-d4e47cef0421 9f81e6bd88d49bd683db76c67e5a7614 {"aliquot_tag": "ALQ_12ce8505", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01865.miRNA-Seq.S37_L002_R1.A C3L-01865 CCRCC miRNA-Seq tissue_normal CPT0392290009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGAAG_S37_L002_R1_001.unaln.bam 335941419 BAM S37_L002_R1 unaligned CPTAC3 6b9d6623-bdec-495a-81cd-40e1e631d61c e67ece03c7fd21a2d9a6eafe2b0feb79 {"aliquot_tag": "ALQ_909e12d4", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.miRNA-Seq.T.hg38 C3L-01865 CCRCC miRNA-Seq tumor CPT0392260009 cd5754c0-0bd2-4470-aa09-f411a7d1d1b1_mirnaseq_gdc_realn.bam 250578124 BAM harmonized CPTAC3 120b5166-f72b-4032-8943-2f6af8e8803a 6f4bfff14f936acee945daf24cf71172 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor"} -C3L-01865.RNA-Seq.chimeric.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.chimeric.gdc_realn.bam 437214999 BAM chimeric harmonized CPTAC3 17be6839-c07c-4314-a659-6937ed574411 152e606ab1db5a7d111a6822a4be05c7 {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.RNA-Seq.chimeric.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.chimeric.gdc_realn.bam 288024570 BAM chimeric harmonized CPTAC3 71840ad2-fa35-4166-9ce3-4c502e82200c 5e03d7d78026fff79c4c22d64c2a46a9 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor"} -C3L-01865.RNA-Seq.genomic.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.genomic.gdc_realn.bam 9332146569 BAM genomic harmonized CPTAC3 c578bda2-2c37-4111-9612-69b9c1f579ef 223eca59b884f6a90d03394e92fcc6cf {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.RNA-Seq.genomic.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.genomic.gdc_realn.bam 7224821838 BAM genomic harmonized CPTAC3 3c6ee22c-38d9-4af8-9976-f4b576ade5a8 b3fa7ae4ce1902fd468b8e07d0250ab3 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor"} -C3L-01865.RNA-Seq.S20_L006_R1.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R1_001.fastq.gz 3456379596 FASTQ S20_L006_R1 unaligned CPTAC3 5e02e48c-21d8-458d-88cf-c84adca0d5de e6cda8722316fe5a6cea838f4860a35f {"aliquot_tag": "ALQ_12ce8505", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01865.RNA-Seq.S20_L006_R2.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R2_001.fastq.gz 3829029386 FASTQ S20_L006_R2 unaligned CPTAC3 dc84f53c-25fd-489e-b417-f5645d72840c 767a53e4e1e2f7bbf32af458db2e9836 {"aliquot_tag": "ALQ_12ce8505", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01865.RNA-Seq.S21_L006_R1.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4476794263 FASTQ S21_L006_R1 unaligned CPTAC3 f5b3d245-d6ed-44e1-a413-2530f7807c26 19fa092c74a002c1cdf0384195024f57 {"aliquot_tag": "ALQ_909e12d4", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.RNA-Seq.S21_L006_R2.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 4988372571 FASTQ S21_L006_R2 unaligned CPTAC3 bf810b10-9635-4312-b143-3183e225d9d3 f878af3417517c09ba5abd6510cc9f48 {"aliquot_tag": "ALQ_909e12d4", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.RNA-Seq.transcriptome.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.transcriptome.gdc_realn.bam 12031452817 BAM transcriptome harmonized CPTAC3 157271a4-31a5-406e-8d81-aea218b00b61 f1d72ef7d924bd6e962f6a82eb93ad57 {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.RNA-Seq.transcriptome.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.transcriptome.gdc_realn.bam 10305449476 BAM transcriptome harmonized CPTAC3 efbed705-7bdf-493d-a9e1-66ddf1e0b77d 64fff06b82cb42704d1b5f8f3fce06f4 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor"} -C3L-01865.WGS.N C3L-01865 CCRCC WGS blood_normal CPT0392340002 CPT0392340002.WholeGenome.RP-2158.bam 25740747985 BAM aligned CPTAC3 a7a9ffb6-c195-4abe-b96e-c4286ab30f4f 6e184f9edd13fae7b9c43b6f53e1bfd3 {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal"} -C3L-01865.WGS.N.hg38 C3L-01865 CCRCC WGS blood_normal CPT0392340002 c8f6b46e-e17d-46dc-9b9e-cc78f9700bec_wgs_gdc_realn.bam 77793818370 BAM harmonized CPTAC3 58cd4cf6-7437-4a6f-9691-2d3f0f263ecc 3a4e1fe4f00627a364751487a3aacdce {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal"} -C3L-01865.WGS.T C3L-01865 CCRCC WGS tumor CPT0392260006 CPT0392260006.WholeGenome.RP-2158.bam 41294115179 BAM aligned CPTAC3 d245af47-abec-4707-af46-1e92b6f8d339 3948f0a2b3bd04aa7abab4871bb06335 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor"} -C3L-01865.WGS.T.hg38 C3L-01865 CCRCC WGS tumor CPT0392260006 33f7ef4e-f5f4-487d-8ef7-0262212153cf_wgs_gdc_realn.bam 111685812126 BAM harmonized CPTAC3 cea48399-24d7-403c-b78c-e920235c065b 9e38d7cfb8970a2084b5d6d2408e6616 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor"} -C3L-01865.WXS.A C3L-01865 CCRCC WXS tissue_normal CPT0392290006 CPT0392290006.WholeExome.RP-1303.bam 20606064608 BAM aligned CPTAC3 a02f802e-0d14-4294-8b71-a2d30796b163 8098ea474c3a81e597b7df242d798235 {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.WXS.A.hg38 C3L-01865 CCRCC WXS tissue_normal CPT0392290006 29573401-69fb-43a0-b47d-d98f21a41542_wxs_gdc_realn.bam 28701279594 BAM harmonized CPTAC3 32cf0421-c323-420d-93ef-60fd37a075cd 981ed2436d5c73655422b089bd50715c {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01865.WXS.N C3L-01865 CCRCC WXS blood_normal CPT0392340002 CPT0392340002.WholeExome.RP-1303.bam 18017369678 BAM aligned CPTAC3 73270234-24b0-440b-a3cb-756ee1fc87dc a7d7dfac3515506dbb5321ec1d9b834c {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal"} -C3L-01865.WXS.N.hg38 C3L-01865 CCRCC WXS blood_normal CPT0392340002 c8f6b46e-e17d-46dc-9b9e-cc78f9700bec_wxs_gdc_realn.bam 24582706361 BAM harmonized CPTAC3 00d892ae-f0a8-49e2-b5a3-c6f70aff6470 b74770d3c3894400e42e78d767ca51e6 {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal"} -C3L-01865.WXS.T C3L-01865 CCRCC WXS tumor CPT0392260006 CPT0392260006.WholeExome.RP-1303.bam 22560631340 BAM aligned CPTAC3 9869eb65-8ef4-4a7a-91d9-e20dcec1f998 c5dc910adea038a58e5695d28adb88be {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor"} -C3L-01865.WXS.T.hg38 C3L-01865 CCRCC WXS tumor CPT0392260006 33f7ef4e-f5f4-487d-8ef7-0262212153cf_wxs_gdc_realn.bam 30956994329 BAM harmonized CPTAC3 3a564ae6-ef6d-4316-9f78-16e77557a03a ed0ae76862c7b3066931903d842108e7 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor"} -C3L-01869.MethArray.Green.A C3L-01869 CCRCC Methylation_Array tissue_normal CPT0104270006 204930630068_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e20d9adb-9271-44da-aa4e-aaae6759d022 f5eeed67cb00f57a59c6297a48c9f89a {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.MethArray.Green.T C3L-01869 CCRCC Methylation_Array tumor CPT0104250009 202234370086_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f4768230-8e2d-4fb1-9e53-2071321b17af 0ebecaffb99dad9b6ba3f8418220f117 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor"} -C3L-01869.MethArray.Red.A C3L-01869 CCRCC Methylation_Array tissue_normal CPT0104270006 204930630068_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 8d4433b7-56ee-4c11-8322-b47ebb9d8db2 9cae606ccefee15e096fd9e1f091be28 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.MethArray.Red.T C3L-01869 CCRCC Methylation_Array tumor CPT0104250009 202234370086_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 22baa7c0-a0bb-47ae-97b8-e646105cfb72 9f09fae744d33c3c3133d9194080a49c {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor"} -C3L-01869.miRNA-Seq.A.hg38 C3L-01869 CCRCC miRNA-Seq tissue_normal CPT0104270009 a0d3acf0-e9f4-4dc6-8c9d-085616be5bc6_mirnaseq_gdc_realn.bam 249660018 BAM harmonized CPTAC3 e3cda1fb-936b-4f0e-8027-603b4d3613c5 3d6e8330afe757348f4ef6c2466eee05 {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.miRNA-Seq.S35_L007_R1.T C3L-01869 CCRCC miRNA-Seq tumor CPT0104250006 181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L007_R1_001.unaln.bam 242625895 BAM S35_L007_R1 unaligned CPTAC3 5bcc7f57-ca20-4d18-9b00-85a2260ee225 4142dee5106f6090f182df0544a3fc18 {"aliquot_tag": "ALQ_97b8e4d3", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01869.miRNA-Seq.S37_L002_R1.A C3L-01869 CCRCC miRNA-Seq tissue_normal CPT0104270009 181119_UNC31-K00269_0165_AH27WCBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 224640156 BAM S37_L002_R1 unaligned CPTAC3 b58c4bf7-c9bf-4a4f-805d-fa9431ff031f 403c3ae49a29e4cb6f2a1cc5d2a6bc7b {"aliquot_tag": "ALQ_7dc7aa22", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.miRNA-Seq.T.hg38 C3L-01869 CCRCC miRNA-Seq tumor CPT0104250006 73fbeec4-2d33-4c70-8077-81ce50676dcd_mirnaseq_gdc_realn.bam 267057928 BAM harmonized CPTAC3 45acf4bf-8ec8-4180-a5bb-1ea86fd4a3b7 20a8856e1bb0a8c73ac348fded92333b {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor"} -C3L-01869.RNA-Seq.chimeric.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.chimeric.gdc_realn.bam 32824012 BAM chimeric harmonized CPTAC3 0f3255c4-eadc-4a8a-ada9-a61bbcd50a5a bf4ba1d01f5dcfa9f0b41dd38c53b793 {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.RNA-Seq.chimeric.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.chimeric.gdc_realn.bam 33364352 BAM chimeric harmonized CPTAC3 0e841d2e-3e6c-4b3e-a5d1-9eddd245e06a 890e3d9998ff5f0be0a018f45b5553cd {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor"} -C3L-01869.RNA-Seq.genomic.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.genomic.gdc_realn.bam 10169834126 BAM genomic harmonized CPTAC3 1b06973d-4fe1-478e-a32b-d1f3ba97128d 73b8f918f99020a28b09c80275289f88 {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.RNA-Seq.genomic.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.genomic.gdc_realn.bam 8187868495 BAM genomic harmonized CPTAC3 c1c7ff21-425e-4e92-a906-0722a7d64cc5 659beec4bc0a08d67d4ca6bdc60bca1d {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor"} -C3L-01869.RNA-Seq.S5_L008_R1.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R1_001.fastq.gz 4407540594 FASTQ S5_L008_R1 unaligned CPTAC3 ed8efa89-263f-41cf-ae47-b38d9488d76d 9894820cce6ec97bcc496a4338572e6a {"aliquot_tag": "ALQ_7dc7aa22", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.RNA-Seq.S5_L008_R2.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R2_001.fastq.gz 4732447620 FASTQ S5_L008_R2 unaligned CPTAC3 5341987b-d880-4778-8c4a-6c74cb1dfaf8 00303a2a5e8395d6ab3991973808744c {"aliquot_tag": "ALQ_7dc7aa22", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.RNA-Seq.S7_L008_R1.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3720636191 FASTQ S7_L008_R1 unaligned CPTAC3 d36d5d2c-b956-4ffa-b021-18fc146e7a86 9c16c05ae9c3faa4770997dcad085112 {"aliquot_tag": "ALQ_97b8e4d3", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01869.RNA-Seq.S7_L008_R2.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4160535503 FASTQ S7_L008_R2 unaligned CPTAC3 88b9a1b5-a8ef-4650-9369-cb6e7a1e32cc d9d0236c47489c172b7143a5535868b1 {"aliquot_tag": "ALQ_97b8e4d3", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01869.RNA-Seq.transcriptome.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.transcriptome.gdc_realn.bam 11413765443 BAM transcriptome harmonized CPTAC3 405f27d9-b4e8-4fe3-894c-bbdab1d16e60 91cd46d091cf82522f75b7d5eae67ffc {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.RNA-Seq.transcriptome.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.transcriptome.gdc_realn.bam 10603146099 BAM transcriptome harmonized CPTAC3 ccdcc420-82e9-498b-a364-7c1160dc5746 956b694d14390d6fec9451f29a68f37b {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor"} -C3L-01869.WGS.A C3L-01869 CCRCC WGS tissue_normal CPT0104270006 CPT0104270006.WholeGenome.RP-1303.bam 67473244432 BAM aligned CPTAC3 1e84ec1b-f768-410a-b7d9-a90607f0245d 670cc125c56c3c4cb0f28ea3c6be34f1 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.WGS.A.hg38 C3L-01869 CCRCC WGS tissue_normal CPT0104270006 a4151231-1f11-41ef-b08f-fd3dff72745f_wgs_gdc_realn.bam 99435484503 BAM harmonized CPTAC3 f1cce340-3372-4bd7-8145-64bf86ece248 f6eca2a15018fdfca601019f0099c17c {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.WGS.N C3L-01869 CCRCC WGS blood_normal CPT0105100002 CPT0105100002.WholeGenome.RP-1303.bam 61375473413 BAM aligned CPTAC3 007c2364-f04d-460a-baac-76702d6b96cb 5886b28232ddda8c51e554f43145644a {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01869.WGS.N.hg38 C3L-01869 CCRCC WGS blood_normal CPT0105100002 9b332c9c-537c-4302-a00f-d7fa4e3f3dc0_wgs_gdc_realn.bam 90807633512 BAM harmonized CPTAC3 9ae25d19-908b-4c60-a336-e63e6c868a7d f0b1e42061339efec0d5bee166b7c931 {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01869.WGS.T C3L-01869 CCRCC WGS tumor CPT0104250009 CPT0104250009.WholeGenome.RP-1303.bam 71540240227 BAM aligned CPTAC3 d7620ab3-b24d-4881-82a3-4f26e1c90729 86495c1508c61ce1c2273679cbaae4aa {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor"} -C3L-01869.WGS.T.hg38 C3L-01869 CCRCC WGS tumor CPT0104250009 290c6799-4bd2-4db8-b47d-94574d5dfb01_wgs_gdc_realn.bam 106274646689 BAM harmonized CPTAC3 de5683b1-1b2b-41ba-bff5-03d993845d7a a4d31094441c78be675d10efeea28051 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor"} -C3L-01869.WXS.A C3L-01869 CCRCC WXS tissue_normal CPT0104270006 CPT0104270006.WholeExome.RP-1303.bam 29673619092 BAM aligned CPTAC3 64c1177c-6d9a-44e8-b588-8b4b96a74954 b44ef7bb1a0682b57059ea65501bbc91 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.WXS.A.hg38 C3L-01869 CCRCC WXS tissue_normal CPT0104270006 a4151231-1f11-41ef-b08f-fd3dff72745f_wxs_gdc_realn.bam 40684023447 BAM harmonized CPTAC3 6b9492e7-f4d2-4128-bf11-8053780d7879 5ca9247f20211dbb8931ce0cb74b7c63 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01869.WXS.N C3L-01869 CCRCC WXS blood_normal CPT0105100002 CPT0105100002.WholeExome.RP-1303.bam 30410678533 BAM aligned CPTAC3 ad71aa26-b9f9-4831-b7b6-25115e8e1f6b 721ad4b6f99b38fb25e721fae4c021a5 {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01869.WXS.N.hg38 C3L-01869 CCRCC WXS blood_normal CPT0105100002 9b332c9c-537c-4302-a00f-d7fa4e3f3dc0_wxs_gdc_realn.bam 42278073368 BAM harmonized CPTAC3 62d4fe45-74cd-4e15-aa3d-edf573ba08cd c7ef73abb7e210ea323bf2fafc37f65a {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01869.WXS.T C3L-01869 CCRCC WXS tumor CPT0104250009 CPT0104250009.WholeExome.RP-1303.bam 39603256600 BAM aligned CPTAC3 0405dffa-1cc5-4329-a1e9-e699b4aee9e1 900a5c56caaf59423c6a91db36d8d8e7 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor"} -C3L-01869.WXS.T.hg38 C3L-01869 CCRCC WXS tumor CPT0104250009 290c6799-4bd2-4db8-b47d-94574d5dfb01_wxs_gdc_realn.bam 54177015426 BAM harmonized CPTAC3 83206c18-5d5d-4798-8c47-7b79d5ab60d4 f7d02c1e42e3768f119ca024245d1bf0 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor"} -C3L-01882.MethArray.Green.A C3L-01882 CCRCC Methylation_Array tissue_normal CPT0092740013 204930640082_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a6de06e0-8dc1-4cb9-8ea0-20e0a4f19b46 672efaeda23e3146edb8c6860ca0d783 {"aliquot_tag": "ALQ_f880a34c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.MethArray.Green.T C3L-01882 CCRCC Methylation_Array tumor CPT0092730009 202234370120_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 73900a4a-0407-4876-9f0c-911f4f0adba5 075563f96e2edf5cf6f75cc2ea4b96c2 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor"} -C3L-01882.MethArray.Red.A C3L-01882 CCRCC Methylation_Array tissue_normal CPT0092740013 204930640082_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 fd3ddf2e-a25e-4b39-b932-c8678f134138 52709f42e78b0e984a31fe3f970bbd10 {"aliquot_tag": "ALQ_f880a34c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.MethArray.Red.T C3L-01882 CCRCC Methylation_Array tumor CPT0092730009 202234370120_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b6c1c25-f154-4694-8360-a8c70f586941 71f7c33edaab86f1b32fedf1d59c0716 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor"} -C3L-01882.miRNA-Seq.A.hg38 C3L-01882 CCRCC miRNA-Seq tissue_normal CPT0092740006 ec31792c-7507-46b9-8aab-b12d52ae34df_mirnaseq_gdc_realn.bam 194311550 BAM harmonized CPTAC3 9152255c-3a9e-4d06-b791-d218b4360b59 778246d42f7e90bf69aba16bfed9d948 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.miRNA-Seq.S15_L007_R1.T C3L-01882 CCRCC miRNA-Seq tumor CPT0092730006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTATAC_S15_L007_R1_001.unaln.bam 260998710 BAM S15_L007_R1 unaligned CPTAC3 cf9dd235-67af-41c8-b341-19a6cb3d1d91 d38226f2e1c4a67515ca527e4f6ed1f4 {"aliquot_tag": "ALQ_23d1ba92", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01882.miRNA-Seq.S20_L005_R1.A C3L-01882 CCRCC miRNA-Seq tissue_normal CPT0092740006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGGCC_S20_L005_R1_001.unaln.bam 173281681 BAM S20_L005_R1 unaligned CPTAC3 d91fbb00-a01e-4ea1-9583-eea7a02a4d8f 6c36b1f767c25dcdf17137761c705797 {"aliquot_tag": "ALQ_91f16682", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.miRNA-Seq.T.hg38 C3L-01882 CCRCC miRNA-Seq tumor CPT0092730006 fc6180e6-500c-4e64-9b04-fe9eb97cfcfc_mirnaseq_gdc_realn.bam 284267447 BAM harmonized CPTAC3 d774bab3-3eb9-42b7-bfd5-0ddab9a570eb 51fcc378654f6d52e53892b9032eaf27 {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor"} -C3L-01882.RNA-Seq.chimeric.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.chimeric.gdc_realn.bam 71307096 BAM chimeric harmonized CPTAC3 87d6ce5b-40bd-4222-84d9-450ecd294e53 51bb62368ed18232767356b62cc08a52 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.RNA-Seq.chimeric.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.chimeric.gdc_realn.bam 45389622 BAM chimeric harmonized CPTAC3 ad3a41b5-9ee0-43f2-831d-298614817ff6 cc177e893d686da703e483d83328d8cc {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor"} -C3L-01882.RNA-Seq.genomic.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.genomic.gdc_realn.bam 7442170549 BAM genomic harmonized CPTAC3 8a5afd30-60db-49f0-806c-d7d2428c4f25 78435707b98734fb85e60daee9645e30 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.RNA-Seq.genomic.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.genomic.gdc_realn.bam 8657991142 BAM genomic harmonized CPTAC3 acfdb98a-2944-47dd-9667-eee2a172371d 65eda33d34b51320ae64a702c1a6b4ad {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor"} -C3L-01882.RNA-Seq.S13_L004_R1.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4021499098 FASTQ S13_L004_R1 unaligned CPTAC3 0d439a00-5449-44f7-875e-94f947fbd83f 31d702430c220d1ef1aee666f09aa792 {"aliquot_tag": "ALQ_23d1ba92", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01882.RNA-Seq.S13_L004_R2.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4422279627 FASTQ S13_L004_R2 unaligned CPTAC3 1a47feb8-dcc3-40b3-8f04-36356277c7c7 dac4e8d4607f79938c21531f3c98b7a1 {"aliquot_tag": "ALQ_23d1ba92", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01882.RNA-Seq.S1_L001_R1.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R1_001.fastq.gz 3765358803 FASTQ S1_L001_R1 unaligned CPTAC3 97dc1c10-d86c-44f4-986a-a65ba31e7fb2 399cf004e5280326830f8f015788784e {"aliquot_tag": "ALQ_91f16682", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.RNA-Seq.S1_L001_R2.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R2_001.fastq.gz 3941652019 FASTQ S1_L001_R2 unaligned CPTAC3 e9485e74-53cb-4c32-a6f2-21ff934c3a10 7ac5025f0e2e30101e71f8464ab34e6f {"aliquot_tag": "ALQ_91f16682", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.RNA-Seq.transcriptome.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.transcriptome.gdc_realn.bam 9740008583 BAM transcriptome harmonized CPTAC3 53a676c8-c4fc-4059-9d20-b5a5c86f5270 36b602a505a8ed53e74c7a4071211a49 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.RNA-Seq.transcriptome.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.transcriptome.gdc_realn.bam 9957814251 BAM transcriptome harmonized CPTAC3 582a2a36-71ec-45cc-88ed-8faa9aa4952b aaae4bd6328eda24c1bef76c620a2f92 {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor"} -C3L-01882.WGS.A C3L-01882 CCRCC WGS tissue_normal CPT0092740009 CPT0092740009.WholeGenome.RP-1303.bam 69775688544 BAM aligned CPTAC3 ad17b3b3-6fa0-4a4f-943c-e5212e739d99 23d33f11fcff1c373518715a1222da90 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.WGS.A.hg38 C3L-01882 CCRCC WGS tissue_normal CPT0092740009 b48fb663-54c2-494d-8864-8c4ab1f84f1f_wgs_gdc_realn.bam 102876480695 BAM harmonized CPTAC3 e301db22-a1cd-450c-b1af-9db77a662b7c 3e89eeec9e8c80f0920d161431d04b78 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.WGS.N C3L-01882 CCRCC WGS blood_normal CPT0093820002 CPT0093820002.WholeGenome.RP-1303.bam 55919177615 BAM aligned CPTAC3 adc1dd9f-1396-4377-b2d8-a76da4e04cff 87b1fdee27dcf37b33589e649e34aa79 {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01882.WGS.N.hg38 C3L-01882 CCRCC WGS blood_normal CPT0093820002 57cd12ae-3813-4ebc-8afb-7369a9367c0a_wgs_gdc_realn.bam 83253606900 BAM harmonized CPTAC3 8798c0d1-4288-45c5-8b71-b4c9bb22dec2 dc863cf7e674165f34b7414bc7986272 {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01882.WGS.T C3L-01882 CCRCC WGS tumor CPT0092730009 CPT0092730009.WholeGenome.RP-1303.bam 58270353756 BAM aligned CPTAC3 c4da78ea-d26a-4b0e-8bbf-b6b5f3a3c3ff 179b6405a69c90155f3960eec968f477 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor"} -C3L-01882.WGS.T.hg38 C3L-01882 CCRCC WGS tumor CPT0092730009 efba470d-46ea-4677-97ff-8db35dd946d0_wgs_gdc_realn.bam 85950651273 BAM harmonized CPTAC3 6eff53a9-7c67-47a1-acb6-b432d4fdd593 d2e4c48c139a197eb7a32ccc77c02c54 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor"} -C3L-01882.WXS.A C3L-01882 CCRCC WXS tissue_normal CPT0092740009 CPT0092740009.WholeExome.RP-1303.bam 36709160220 BAM aligned CPTAC3 c08107d6-49b3-4a39-97b6-0ceb91a0648f 6c81754bb481bf259e5986ab30b26518 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.WXS.A.hg38 C3L-01882 CCRCC WXS tissue_normal CPT0092740009 b48fb663-54c2-494d-8864-8c4ab1f84f1f_wxs_gdc_realn.bam 49855636385 BAM harmonized CPTAC3 7b418aac-85d2-492b-bbcf-0c5d5f0f97af a5709b20f350f954e21c4d32c5ee5cb3 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01882.WXS.N C3L-01882 CCRCC WXS blood_normal CPT0093820002 CPT0093820002.WholeExome.RP-1303.bam 33693344338 BAM aligned CPTAC3 7c1b01c5-90fe-4d91-b069-3f46aca05a6a fb1e16bef3a8e62746984b673655ef08 {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01882.WXS.N.hg38 C3L-01882 CCRCC WXS blood_normal CPT0093820002 57cd12ae-3813-4ebc-8afb-7369a9367c0a_wxs_gdc_realn.bam 44875544218 BAM harmonized CPTAC3 aa8dcb5c-c43c-43b3-a6b5-6e4fda57c932 8c2f936c006afd45a05f2d16dcb0a99f {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01882.WXS.T C3L-01882 CCRCC WXS tumor CPT0092730009 CPT0092730009.WholeExome.RP-1303.bam 35464277386 BAM aligned CPTAC3 472a62b4-06c8-4d13-aae3-32121d73942b 95d55deaac6d23495eb05ed72aca175f {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor"} -C3L-01882.WXS.T.hg38 C3L-01882 CCRCC WXS tumor CPT0092730009 efba470d-46ea-4677-97ff-8db35dd946d0_wxs_gdc_realn.bam 48769615200 BAM harmonized CPTAC3 3617bf1b-0525-4015-b764-cc38abe3bc6a 3fb0e89c2acee13327d8eca08c90b6e8 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor"} -C3L-01884.MethArray.Green.A C3L-01884 LSCC Methylation_Array tissue_normal CPT0104380006 203219670122_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3b3b7050-dac2-49bc-8f69-f46fcf3ff0f9 278a5ca3b4ceb70e9c52c743fbc6b9e2 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.MethArray.Green.T C3L-01884 LSCC Methylation_Array tumor CPT0104360011 203219720211_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 73575268-aacc-4d39-94f1-5b5c893f9e89 f79dc5ac83f4d7c98cbf6276ba903277 {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor"} -C3L-01884.MethArray.Red.A C3L-01884 LSCC Methylation_Array tissue_normal CPT0104380006 203219670122_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 c96528d5-45a2-445a-be4c-56166ed42320 9a1df26d79a69b56dc29f497d2e32fbb {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.MethArray.Red.T C3L-01884 LSCC Methylation_Array tumor CPT0104360011 203219720211_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 2d991295-bd8c-4c5e-85ef-da593d86009f 03be6e63a78c806b94b9ec4e93908ddc {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor"} -C3L-01884.miRNA-Seq.A.hg38 C3L-01884 LSCC miRNA-Seq tissue_normal CPT0104380009 7475035a-b4a1-41ed-aa82-ad4f37ee5da0_mirnaseq_gdc_realn.bam 245225051 BAM harmonized CPTAC3 2ff2b0c2-fe99-42de-9baa-ad7e1b195f35 7a248f3538da5597d4422c941c00c6a5 {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.miRNA-Seq.S1_L001_R1.T C3L-01884 LSCC miRNA-Seq tumor CPT0104360006 181219_UNC31-K00269_0173_BHYGJJBBXX_ATCACG_S1_L001_R1_001.unaln.bam 206913950 BAM S1_L001_R1 unaligned CPTAC3 12a570ff-5890-496c-babc-1e4d7a985c5b 886ac8bd9fcbd40c01b353f317644d80 {"aliquot_tag": "ALQ_1b444da6", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01884.miRNA-Seq.S27_L002_R1.A C3L-01884 LSCC miRNA-Seq tissue_normal CPT0104380009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAAAAG_S27_L002_R1_001.unaln.bam 223358140 BAM S27_L002_R1 unaligned CPTAC3 22f9eda2-2a37-4d95-ac8a-f06783826019 70b502a574478f625695d36e64717d72 {"aliquot_tag": "ALQ_34cbee56", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.miRNA-Seq.T.hg38 C3L-01884 LSCC miRNA-Seq tumor CPT0104360006 eeeff780-3306-4ff3-8420-ff4f4024d228_mirnaseq_gdc_realn.bam 231672049 BAM harmonized CPTAC3 97a3cb6b-faf1-4129-8585-d500708c82a0 f63d0c8dbfe2ef4fe6f87ec8c3654bba {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor"} -C3L-01884.RNA-Seq.chimeric.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.chimeric.gdc_realn.bam 19911106 BAM chimeric harmonized CPTAC3 1c3875b4-68f8-47bf-83d5-5216b82577ca 7bf8b846f8e5685663d939084acaaf24 {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.RNA-Seq.chimeric.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.chimeric.gdc_realn.bam 41282836 BAM chimeric harmonized CPTAC3 659701b8-02c9-48f4-a3b7-ec69816a7d04 9c3333d0199534e9e674734151e29a94 {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor"} -C3L-01884.RNA-Seq.genomic.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.genomic.gdc_realn.bam 9071450802 BAM genomic harmonized CPTAC3 5343564d-df3d-4f3f-be2c-5d3408a6bc95 081c16fc18c608887a4a7e0855ed1d31 {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.RNA-Seq.genomic.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.genomic.gdc_realn.bam 9335307402 BAM genomic harmonized CPTAC3 dbdf3663-c3ff-4e3e-aefb-8bff5a2a382f 2da5b054cc0cc3dde49f38646947dab1 {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor"} -C3L-01884.RNA-Seq.S12_L003_R1.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R1_001.fastq.gz 3235983057 FASTQ S12_L003_R1 unaligned CPTAC3 afdaedbd-53e9-4e2c-93ea-77935e66b214 05f183e855eeadd4306de17aa60ed4f4 {"aliquot_tag": "ALQ_34cbee56", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.RNA-Seq.S12_L003_R2.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R2_001.fastq.gz 3390937207 FASTQ S12_L003_R2 unaligned CPTAC3 f626297e-f4a8-4afb-9804-39a21a85a5e6 0fe4653ff9e1b6532701a562f1bc5d13 {"aliquot_tag": "ALQ_34cbee56", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.RNA-Seq.S19_L005_R1.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R1_001.fastq.gz 4138015549 FASTQ S19_L005_R1 unaligned CPTAC3 c0102389-3ddf-4d9d-bb6b-dd40fbc85ffe ef434050f9edbf27d4a48b2d35a8108b {"aliquot_tag": "ALQ_1b444da6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01884.RNA-Seq.S19_L005_R2.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R2_001.fastq.gz 4042165006 FASTQ S19_L005_R2 unaligned CPTAC3 fb0a0c82-2ab6-46ea-bbc0-3841d4997d70 feef7ec8bbcb62b1c3f33cd25c321946 {"aliquot_tag": "ALQ_1b444da6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01884.RNA-Seq.transcriptome.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.transcriptome.gdc_realn.bam 8684651052 BAM transcriptome harmonized CPTAC3 40c55b74-6d45-4a5c-9de4-059c08085736 86826f118f3193bb6a655ad39e98dd3d {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.RNA-Seq.transcriptome.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.transcriptome.gdc_realn.bam 10617597163 BAM transcriptome harmonized CPTAC3 e0506fad-2f0f-460f-a171-1c3cc2c45454 d4097b9022b3fc8b2ca030f163efbecd {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor"} -C3L-01884.WGS.A C3L-01884 LSCC WGS tissue_normal CPT0104380006 CPT0104380006.WholeGenome.RP-1303.bam 62682836844 BAM aligned CPTAC3 c0dd0a04-175f-4d3b-a402-715a16e7a913 9362823195e3ed7ef575634ab4bd0430 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.WGS.A.hg38 C3L-01884 LSCC WGS tissue_normal CPT0104380006 7ac07dcd-9f3c-4723-84de-6673ff7d4e05_wgs_gdc_realn.bam 92104161515 BAM harmonized CPTAC3 23c71a11-f980-4b70-8819-dbeb96cc02e7 09c2feb427e9ca511ba79d18f12d4412 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.WGS.N C3L-01884 LSCC WGS blood_normal CPT0105120002 CPT0105120002.WholeGenome.RP-1303.bam 60040420424 BAM aligned CPTAC3 c3a3e25e-0da6-4af1-8365-898fcf5bce47 059083553962b6a87f514e77048ef74b {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01884.WGS.N.hg38 C3L-01884 LSCC WGS blood_normal CPT0105120002 fb1f04c2-11b4-46b5-9102-75c435c66d06_wgs_gdc_realn.bam 87466633512 BAM harmonized CPTAC3 6f566337-e30d-446d-ab64-36ac1f18d5ec 874d643021131657e327b718076e256c {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01884.WGS.T C3L-01884 LSCC WGS tumor CPT0104360011 CPT0104360011.WholeGenome.RP-1303.bam 60512658939 BAM aligned CPTAC3 c4a5d353-a5d1-4a6c-a07d-1cf6f6d13a2e 7c57779793a1edd39dcab3722d893cce {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor"} -C3L-01884.WGS.T.hg38 C3L-01884 LSCC WGS tumor CPT0104360011 8df61ace-1d12-451f-b246-d43e6e2a026e_wgs_gdc_realn.bam 87501645409 BAM harmonized CPTAC3 e667336b-a6c8-4bbc-864c-7256ba2fdcb4 c5da51aff8b580ee2a2ce78004efe295 {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor"} -C3L-01884.WXS.A C3L-01884 LSCC WXS tissue_normal CPT0104380006 CPT0104380006.WholeExome.RP-1303.bam 21565487570 BAM aligned CPTAC3 c58c1e63-2f3a-4def-b12c-a9498b1c94c6 805b8d6629f14f3f13a130adae063de9 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.WXS.A.hg38 C3L-01884 LSCC WXS tissue_normal CPT0104380006 7ac07dcd-9f3c-4723-84de-6673ff7d4e05_wxs_gdc_realn.bam 29765627728 BAM harmonized CPTAC3 46092fe0-a33e-4f27-a099-028cd19319e2 91cf1b23a4413ee4a41981162121d51a {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01884.WXS.N C3L-01884 LSCC WXS blood_normal CPT0105120002 CPT0105120002.WholeExome.RP-1303.bam 21459893394 BAM aligned CPTAC3 a0138b2b-afcb-4e51-b50a-7bb8dbb8d7b5 f6cec62b583321d7a41ee19fe8ec2126 {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01884.WXS.N.hg38 C3L-01884 LSCC WXS blood_normal CPT0105120002 fb1f04c2-11b4-46b5-9102-75c435c66d06_wxs_gdc_realn.bam 29548707041 BAM harmonized CPTAC3 50490bfc-a7ba-4b19-b06d-9cd958a4e0e2 487dd17343f02399f7cf354a7b321af9 {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-01884.WXS.T C3L-01884 LSCC WXS tumor CPT0104360011 CPT0104360011.WholeExome.RP-1303.bam 23153486816 BAM aligned CPTAC3 4ff10626-5fe2-497e-8abe-dab2734cf4ec 55ff704e94a011c37b05260b2f346945 {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor"} -C3L-01884.WXS.T.hg38 C3L-01884 LSCC WXS tumor CPT0104360011 8df61ace-1d12-451f-b246-d43e6e2a026e_wxs_gdc_realn.bam 32129329427 BAM harmonized CPTAC3 7fadc599-50aa-4f5a-84b1-83da53b9fe43 3808dfaf9a8347b509fa9cafd4f0eebf {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor"} -C3L-01885.MethArray.Green.A C3L-01885 CCRCC Methylation_Array tissue_normal CPT0092800013 204930630082_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a3e7f623-5fb6-43ce-955b-78c567d0318e 6c7d791e969cf6ac3a604493475af47e {"aliquot_tag": "ALQ_fc56b759", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.MethArray.Green.T C3L-01885 CCRCC Methylation_Array tumor CPT0092790009 202234380102_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3b6d789c-0ad8-4e4b-b230-d52d352de56f c3283c7d1e3177e33995c7c0139274f7 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01885.MethArray.Red.A C3L-01885 CCRCC Methylation_Array tissue_normal CPT0092800013 204930630082_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 342fc6b3-d049-4243-a41b-4afe3ba89b06 a5dba37e368b301dcb91237e04010c4e {"aliquot_tag": "ALQ_fc56b759", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.MethArray.Red.T C3L-01885 CCRCC Methylation_Array tumor CPT0092790009 202234380102_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 63c47dc7-5bb0-4449-824d-6c8726e19691 a3f8d1425e600d7a8c511a7242668171 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01885.miRNA-Seq.A.hg38 C3L-01885 CCRCC miRNA-Seq tissue_normal CPT0092800006 11a45a5b-c734-4a2f-a5e4-a44999fc8107_mirnaseq_gdc_realn.bam 168176872 BAM harmonized CPTAC3 ae46c856-582a-4607-8c13-8b8cb449ebc5 8c4ab6e074441136d703e3764cb88cb7 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.miRNA-Seq.S16_L007_R1.T C3L-01885 CCRCC miRNA-Seq tumor CPT0092790006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTCAGA_S16_L007_R1_001.unaln.bam 204752895 BAM S16_L007_R1 unaligned CPTAC3 907459a1-4b5f-4588-a87f-56982c7e7304 c099f33123a3ff79f45f0a683066a0d3 {"aliquot_tag": "ALQ_6961a233", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01885.miRNA-Seq.S21_L005_R1.A C3L-01885 CCRCC miRNA-Seq tissue_normal CPT0092800006 181108_UNC31-K00269_0163_BH23TVBBXY_GTTTCG_S21_L005_R1_001.unaln.bam 148049505 BAM S21_L005_R1 unaligned CPTAC3 d2a6782d-63e9-47ca-b54c-b6da05164896 84f75ff203896f22237c50eb3111db38 {"aliquot_tag": "ALQ_95277297", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.miRNA-Seq.T.hg38 C3L-01885 CCRCC miRNA-Seq tumor CPT0092790006 c5a04b18-0fcf-4eea-82b7-86172fd92e37_mirnaseq_gdc_realn.bam 224463536 BAM harmonized CPTAC3 f01efc28-95d9-4086-8b7e-347f3e2f2990 b5cd7282d814d468eebba122afd53eba {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor"} -C3L-01885.RNA-Seq.chimeric.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.chimeric.gdc_realn.bam 60436984 BAM chimeric harmonized CPTAC3 05f9d01f-9b67-4424-b465-8f03519d778a 4269f843954f37c7244c1ab28dd97633 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.RNA-Seq.chimeric.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.chimeric.gdc_realn.bam 50627938 BAM chimeric harmonized CPTAC3 0db3c1f5-94ba-430d-afd2-2639c5a6ff61 7eec9bbcaefdbe1037a96745c04e73ee {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor"} -C3L-01885.RNA-Seq.genomic.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.genomic.gdc_realn.bam 7835750260 BAM genomic harmonized CPTAC3 5b0e358f-9ad2-4170-b20a-337b6c8d1b8c f4780cdae650f4332488a11de5798e35 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.RNA-Seq.genomic.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.genomic.gdc_realn.bam 9097580946 BAM genomic harmonized CPTAC3 19cc5d15-ba85-4a25-a0fd-db92dcbbceaa 29a185cda41c5afea50eda2f991de181 {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor"} -C3L-01885.RNA-Seq.S16_L004_R1.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4220191441 FASTQ S16_L004_R1 unaligned CPTAC3 8575eff6-7058-4a99-a065-66fa758b86a4 cba610ccba8a9b1b9149b4137cdde931 {"aliquot_tag": "ALQ_6961a233", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01885.RNA-Seq.S16_L004_R2.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4439395784 FASTQ S16_L004_R2 unaligned CPTAC3 c791a7fd-0554-4433-9ad9-9ec6349d8abc 7bd1ccc7e35f9b365a0f5404b2039c4c {"aliquot_tag": "ALQ_6961a233", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01885.RNA-Seq.S4_L001_R1.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R1_001.fastq.gz 3956939721 FASTQ S4_L001_R1 unaligned CPTAC3 971ddf62-477c-4dda-8d41-d480ec464f34 5bf53ed716e5461fab0ddde829c90f2b {"aliquot_tag": "ALQ_95277297", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.RNA-Seq.S4_L001_R2.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R2_001.fastq.gz 4129271682 FASTQ S4_L001_R2 unaligned CPTAC3 4e94b33d-c89e-4bd3-9066-f3cc316401c3 6eeee13d3357fed23c310bbf6ab59a53 {"aliquot_tag": "ALQ_95277297", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.RNA-Seq.transcriptome.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.transcriptome.gdc_realn.bam 9968158425 BAM transcriptome harmonized CPTAC3 6b354bc7-10e7-47b6-8595-7708a1282489 18ce9face4639c0e817fce84c03b3269 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.RNA-Seq.transcriptome.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.transcriptome.gdc_realn.bam 10764286878 BAM transcriptome harmonized CPTAC3 16d41a78-5a7b-4888-84dc-83efff69e35e 7e066dfcbc2d9dfa7bad1561029c200a {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor"} -C3L-01885.WGS.A C3L-01885 CCRCC WGS tissue_normal CPT0092800009 CPT0092800009.WholeGenome.RP-1303.bam 57460839967 BAM aligned CPTAC3 de478ac0-eb77-430e-9492-82031bbdcf19 1a0c1696b01fca50ee0a2e6825bafe2d {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.WGS.A.hg38 C3L-01885 CCRCC WGS tissue_normal CPT0092800009 6d5aa340-f9fd-4f7e-9a82-0970e7137e07_wgs_gdc_realn.bam 83269364748 BAM harmonized CPTAC3 b796069e-101a-4925-97cb-c0cc114e0818 3103eb157c85ab55fe77179ced537674 {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.WGS.N C3L-01885 CCRCC WGS blood_normal CPT0093830002 CPT0093830002.WholeGenome.RP-1303.bam 55235000334 BAM aligned CPTAC3 531aa4c5-b87d-41e1-9a07-32db757ea1ee 6197eaa69178ff248ca61db3b2f3c34e {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01885.WGS.N.hg38 C3L-01885 CCRCC WGS blood_normal CPT0093830002 4433997d-8aed-4464-ac3c-2895df2e69b4_wgs_gdc_realn.bam 80335173667 BAM harmonized CPTAC3 e041ad49-5dd4-4378-b7f3-31dffbfe5f0e 9050c3e75520ff279da322550538f497 {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01885.WGS.T C3L-01885 CCRCC WGS tumor CPT0092790009 CPT0092790009.WholeGenome.RP-1303.bam 66987147894 BAM aligned CPTAC3 1f7ecaae-ba83-45a0-824e-d8e104d63cc3 920989c02cd814ef80248f5261d93f1c {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01885.WGS.T.hg38 C3L-01885 CCRCC WGS tumor CPT0092790009 26c6c792-50dc-4611-8888-d9baa193ac21_wgs_gdc_realn.bam 98749716402 BAM harmonized CPTAC3 95cc0b3f-00c6-4022-8bf0-ac779b158514 4d4cbf3c86e6cd790b2e0a9b88216a37 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01885.WXS.A C3L-01885 CCRCC WXS tissue_normal CPT0092800009 CPT0092800009.WholeExome.RP-1303.bam 33114132161 BAM aligned CPTAC3 3ad095d6-b73e-4d8c-8381-6d1f5b1bc571 2629abf6c94c0d4e762c7f78534f869c {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.WXS.A.hg38 C3L-01885 CCRCC WXS tissue_normal CPT0092800009 6d5aa340-f9fd-4f7e-9a82-0970e7137e07_wxs_gdc_realn.bam 44677632650 BAM harmonized CPTAC3 53229c75-1fe4-49e6-a6e9-76c78f54cb96 985e91aa7c03d9248dda8a3d929d944e {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01885.WXS.N C3L-01885 CCRCC WXS blood_normal CPT0093830002 CPT0093830002.WholeExome.RP-1303.bam 36363186218 BAM aligned CPTAC3 bd1f8d22-b08c-48f1-81de-d1e570b2cb39 cbed23fbe994b6460ad84d1142c9d1a3 {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01885.WXS.N.hg38 C3L-01885 CCRCC WXS blood_normal CPT0093830002 4433997d-8aed-4464-ac3c-2895df2e69b4_wxs_gdc_realn.bam 48067773726 BAM harmonized CPTAC3 3a89ac5a-fb2d-4be7-bf48-6af9f0b0e1d5 0af18b44e04bfe66c1434ce607e0f8f2 {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal"} -C3L-01885.WXS.T C3L-01885 CCRCC WXS tumor CPT0092790009 CPT0092790009.WholeExome.RP-1303.bam 33405693413 BAM aligned CPTAC3 e1704ea1-c74b-46ff-a772-9d990983bd50 2c4ccd034070e283104ed437b52586f9 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01885.WXS.T.hg38 C3L-01885 CCRCC WXS tumor CPT0092790009 26c6c792-50dc-4611-8888-d9baa193ac21_wxs_gdc_realn.bam 46155658740 BAM harmonized CPTAC3 3d72262d-e02e-4573-9e5a-d5af15dcbdc4 3d7b904e401b3321c4726cf729d35792 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01887.MethArray.Green.T C3L-01887 GBM Methylation_Array tumor CPT0104330009 202234370120_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9dca1e69-3fe0-4187-8875-e1c101e6f4d0 4c96771f532677a7e2e88de4c1c85e1e {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor"} -C3L-01887.MethArray.Red.T C3L-01887 GBM Methylation_Array tumor CPT0104330009 202234370120_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 23bb3544-d1d8-4d9d-aaeb-c662f35ce180 41122b09792d77e95aab859d08ea42d1 {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor"} -C3L-01887.miRNA-Seq.S36_L007_R1.T C3L-01887 GBM miRNA-Seq tumor CPT0104330006 181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L007_R1_001.unaln.bam 201220264 BAM S36_L007_R1 unaligned CPTAC3 a3d53839-634b-4530-a0aa-3c0e170c6419 e82ecbe61300e6be4784b3aabd98dac6 {"aliquot_tag": "ALQ_d3a4c2d6", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01887.miRNA-Seq.T.hg38 C3L-01887 GBM miRNA-Seq tumor CPT0104330006 aa8c421b-296d-405e-b0a5-c1d210400066_mirnaseq_gdc_realn.bam 223138231 BAM harmonized CPTAC3 ba0536c7-b28a-4b31-86de-55c9ee4f64bc bb0a22725472c138a9cd295a1c9f5321 {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor"} -C3L-01887.RNA-Seq.chimeric.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.chimeric.gdc_realn.bam 34844321 BAM chimeric harmonized CPTAC3 33b7f6c2-4d17-4242-b8a7-bcc791d9f6e3 e78ba6a667f9c60fe3c72deef08f527b {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor"} -C3L-01887.RNA-Seq.genomic.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.genomic.gdc_realn.bam 8258643698 BAM genomic harmonized CPTAC3 e4029310-5fd8-41eb-ad59-fd99323be308 af4b38a0515d136c902a7f37382b93f0 {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor"} -C3L-01887.RNA-Seq.S3_L007_R1.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R1_001.fastq.gz 3752130477 FASTQ S3_L007_R1 unaligned CPTAC3 d3c22860-6d90-470c-afbb-b47b75db5f09 8752c59cd37e70e0ba526fdca7e740ba {"aliquot_tag": "ALQ_d3a4c2d6", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01887.RNA-Seq.S3_L007_R2.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R2_001.fastq.gz 3825927354 FASTQ S3_L007_R2 unaligned CPTAC3 7d80520b-a0a8-4768-a8c0-2b23b35b0341 373f47bf8be5ffd5887a827e46a764de {"aliquot_tag": "ALQ_d3a4c2d6", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01887.RNA-Seq.transcriptome.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.transcriptome.gdc_realn.bam 8592920683 BAM transcriptome harmonized CPTAC3 c8b120d3-7e99-4297-9482-38fcbf72c334 769e1b529cdef656a3bea313e54aaf41 {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor"} -C3L-01887.WGS.N C3L-01887 GBM WGS blood_normal CPT0105110002 CPT0105110002.WholeGenome.RP-1303.bam 55815489246 BAM aligned CPTAC3 5b7726df-2f6c-4db6-a780-cdd80ecce462 a476b0ae3faa7f088a6483fd12029053 {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal"} -C3L-01887.WGS.N.hg38 C3L-01887 GBM WGS blood_normal CPT0105110002 030a80ff-6a29-4599-b87a-c0811c028057_wgs_gdc_realn.bam 83145630508 BAM harmonized CPTAC3 9f992d65-6bb5-473e-a664-1a817a7eec2e 99dfed0b5847e5fa3099ffe113d0af21 {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal"} -C3L-01887.WGS.T C3L-01887 GBM WGS tumor CPT0104330009 CPT0104330009.WholeGenome.RP-1303.bam 78887252807 BAM aligned CPTAC3 ee9f7819-83f0-462f-9ff4-969da6ea9409 a150d19f185c9aad6ffc2c6853db0bcc {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor"} -C3L-01887.WGS.T.hg38 C3L-01887 GBM WGS tumor CPT0104330009 e50eb6e0-6790-44d4-a6e8-6f9f4f561ee2_wgs_gdc_realn.bam 116396076820 BAM harmonized CPTAC3 59e0b276-24b6-4bf5-80fc-ff074f3eba57 c2ea3202b9f5d835fda442dc1c35923e {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor"} -C3L-01887.WXS.N C3L-01887 GBM WXS blood_normal CPT0105110002 CPT0105110002.WholeExome.RP-1303.bam 30407460834 BAM aligned CPTAC3 a486528c-3b8e-43a6-b2b0-afb801c4f80b c3a300ccf8f014b80b9059cb03413eea {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal"} -C3L-01887.WXS.N.hg38 C3L-01887 GBM WXS blood_normal CPT0105110002 030a80ff-6a29-4599-b87a-c0811c028057_wxs_gdc_realn.bam 41928830556 BAM harmonized CPTAC3 da78769f-76f2-4083-bdc1-c51f09fa28ac d507e8e13e1c23e5e325223bdad062ce {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal"} -C3L-01887.WXS.T C3L-01887 GBM WXS tumor CPT0104330009 CPT0104330009.WholeExome.RP-1303.bam 55248086562 BAM aligned CPTAC3 16b7f8c5-3428-4d6c-ac01-2f00a50abe76 f8df5d74d3b4428d17753e6ce9e5ef9f {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor"} -C3L-01887.WXS.T.hg38 C3L-01887 GBM WXS tumor CPT0104330009 e50eb6e0-6790-44d4-a6e8-6f9f4f561ee2_wxs_gdc_realn.bam 76002207187 BAM harmonized CPTAC3 f7ca027d-17a7-4874-98bb-46c97b5abc2d 51157405e5cf1844b4c78723fc3f6572 {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor"} -C3L-01889.MethArray.Green.A C3L-01889 LUAD Methylation_Array tissue_normal CPT0092250009 203027390034_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0bd13c10-4d4a-424a-b7ec-8ff7723cc25a cd146877888ae8d5d42aba2331982219 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.MethArray.Green.T C3L-01889 LUAD Methylation_Array tumor CPT0092240009 202234360025_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 67d7d90d-379c-4ec6-bec0-fe82b13dcd65 1fdb334356ea2ac291132a23ffd24594 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor"} -C3L-01889.MethArray.Red.A C3L-01889 LUAD Methylation_Array tissue_normal CPT0092250009 203027390034_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 98cc833e-cad5-421d-a4f1-adbe87fddddf ff0d9d32e1c426aee5b0b8741989ea6d {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.MethArray.Red.T C3L-01889 LUAD Methylation_Array tumor CPT0092240009 202234360025_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 4db6cf89-f079-4a4d-99c8-bf15cb207647 3519ab37086bec229f48fcebab8fa02c {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor"} -C3L-01889.miRNA-Seq.A.hg38 C3L-01889 LUAD miRNA-Seq tissue_normal CPT0092250006 1276ed77-f8f4-4a58-ac02-74b2e081c593_mirnaseq_gdc_realn.bam 229702934 BAM harmonized CPTAC3 3faadb48-311e-4c00-be4d-0c9cef55dd2c 6d5f3f929d4f5f8db44f6c752995e283 {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.miRNA-Seq.S44_L002_R1.A C3L-01889 LUAD miRNA-Seq tissue_normal CPT0092250006 181108_UNC31-K00269_0163_BH23TVBBXY_TATAAT_S44_L002_R1_001.unaln.bam 204008851 BAM S44_L002_R1 unaligned CPTAC3 a3a6e106-38ae-4832-8f5c-48574f36354f 2d6096d57eb21d0e0f2dac4496f856ec {"aliquot_tag": "ALQ_fc5cde81", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.miRNA-Seq.S8_L007_R1.T C3L-01889 LUAD miRNA-Seq tumor CPT0092240006 180724_UNC32-K00270_0106_BHWK3MBBXX_CACTCA_S8_L007_R1_001.unaln.bam 211382583 BAM S8_L007_R1 unaligned CPTAC3 fef410d2-9e32-416c-afaf-1b2223478780 e1bdff6068ea754b2aad8a014d807475 {"aliquot_tag": "ALQ_c13cf731", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01889.miRNA-Seq.T.hg38 C3L-01889 LUAD miRNA-Seq tumor CPT0092240006 1ebfaf10-1622-4d07-8bc5-87b730c272dc_mirnaseq_gdc_realn.bam 227760459 BAM harmonized CPTAC3 bbf74c6b-0a54-42a1-bd66-80e2acba0432 34992fa0433b7e70a0a1a2dd546b5dbe {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor"} -C3L-01889.RNA-Seq.chimeric.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.chimeric.gdc_realn.bam 55526078 BAM chimeric harmonized CPTAC3 9e7f971a-ceed-4c1c-9ea3-daec4f723e79 7bf20940a06a046eebe4377001bacfc0 {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.RNA-Seq.chimeric.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.chimeric.gdc_realn.bam 49578563 BAM chimeric harmonized CPTAC3 70d6995b-bedd-4387-a85b-42e0739c414d 27507ebeb2f40b973f42866ee2fa5850 {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor"} -C3L-01889.RNA-Seq.genomic.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.genomic.gdc_realn.bam 5295154842 BAM genomic harmonized CPTAC3 1d3a9e67-d8a2-447e-94c1-86a7b5199814 e0285763c58880e7d3619d749fa2d79c {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.RNA-Seq.genomic.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.genomic.gdc_realn.bam 9665624018 BAM genomic harmonized CPTAC3 2b2d6f9d-75b6-43df-9316-20bbf5597167 65101670220ef31204a2a06bb17e3a8d {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor"} -C3L-01889.RNA-Seq.S14_L004_R1.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R1_001.fastq.gz 2593602299 FASTQ S14_L004_R1 unaligned CPTAC3 b451f11f-f844-4236-9ba0-116e8a60eb8e 80cffe4785b536d2d21ea903b57c957f {"aliquot_tag": "ALQ_fc5cde81", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.RNA-Seq.S14_L004_R2.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R2_001.fastq.gz 2825476482 FASTQ S14_L004_R2 unaligned CPTAC3 682eb12d-02fc-48e0-b83e-fb4dbeac16a6 9e3359cfa3b7a25fd83721ddb6ab3438 {"aliquot_tag": "ALQ_fc5cde81", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.RNA-Seq.S4_L006_R1.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 4426449980 FASTQ S4_L006_R1 unaligned CPTAC3 82fdf3eb-3eb7-4306-b018-0301e1a5d687 9f2f3d54c949a2671d8a76424d4f79cf {"aliquot_tag": "ALQ_c13cf731", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01889.RNA-Seq.S4_L006_R2.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 4894117818 FASTQ S4_L006_R2 unaligned CPTAC3 c247d46d-1ef8-48a2-9564-41c2122d671d c66726f80411991f948d2d17a8481160 {"aliquot_tag": "ALQ_c13cf731", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01889.RNA-Seq.transcriptome.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.transcriptome.gdc_realn.bam 6657334396 BAM transcriptome harmonized CPTAC3 8e1c5dab-450e-4570-a2ee-18ecf268dea1 fc039e918d42f08836dc51c451676e21 {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.RNA-Seq.transcriptome.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.transcriptome.gdc_realn.bam 10851206630 BAM transcriptome harmonized CPTAC3 bf34f99e-a69b-469a-8e93-ce1e03090e6d 606a2874046b4a2238b8b1c2cfca55a2 {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor"} -C3L-01889.WGS.A C3L-01889 LUAD WGS tissue_normal CPT0092250009 CPT0092250009.WholeGenome.RP-1303.bam 61028379434 BAM aligned CPTAC3 ebb51687-65a8-403a-b0b3-78a47c6386bb 19186c781814180f4765665089450428 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.WGS.A.hg38 C3L-01889 LUAD WGS tissue_normal CPT0092250009 7e191962-9279-4ced-bad0-d13f9562894c_wgs_gdc_realn.bam 89725055194 BAM harmonized CPTAC3 ad21af02-0870-40bb-b0bb-d3ff3919022f 2f47a976c1f2142ea634180ba3dde85e {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.WGS.N C3L-01889 LUAD WGS blood_normal CPT0093760002 CPT0093760002.WholeGenome.RP-1303.bam 76616365139 BAM aligned CPTAC3 ac570ca9-5f2d-4b60-ac77-c93f909f1c94 ac52472c3e9bae27afa4c20a66e63bfe {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01889.WGS.N.hg38 C3L-01889 LUAD WGS blood_normal CPT0093760002 c2c323c4-a8f3-46e7-8eaf-28154ed2dbd9_wgs_gdc_realn.bam 114785133755 BAM harmonized CPTAC3 d8620204-9330-4def-9095-858dd79f1a8f 6ff1eba2a0cc25cc9d4fec5453d7218a {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01889.WGS.T C3L-01889 LUAD WGS tumor CPT0092240009 CPT0092240009.WholeGenome.RP-1303.bam 62461446369 BAM aligned CPTAC3 d0833140-79e6-4c3c-85c2-c0a4b8b4bb6f 83d1ed9d82c178288ffd8e116d3e525d {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor"} -C3L-01889.WGS.T.hg38 C3L-01889 LUAD WGS tumor CPT0092240009 e370556f-98bc-4182-8a75-9ef866159d07_wgs_gdc_realn.bam 92198541467 BAM harmonized CPTAC3 df83e48f-7069-4f85-a1ea-f4099cdc90c9 01b0b11d1949a0480cad0671b0663fd1 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor"} -C3L-01889.WXS.A C3L-01889 LUAD WXS tissue_normal CPT0092250009 CPT0092250009.WholeExome.RP-1303.bam 36469410792 BAM aligned CPTAC3 757e3556-4620-454d-ad84-543aaeacd5aa a9ee5e81fbba7c465116ce8b9037ead4 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.WXS.A.hg38 C3L-01889 LUAD WXS tissue_normal CPT0092250009 7e191962-9279-4ced-bad0-d13f9562894c_wxs_gdc_realn.bam 48938467272 BAM harmonized CPTAC3 fa5e9e3f-d86f-49df-ad4f-b35bbb76980e 3864178066a42a0cbdf0bd810a6dc286 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01889.WXS.N C3L-01889 LUAD WXS blood_normal CPT0093760002 CPT0093760002.WholeExome.RP-1303.bam 27702647558 BAM aligned CPTAC3 ccd4a461-26fc-463c-911e-ecf935332ecd 7c04db5aa57e8f5b48c109f849f76848 {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01889.WXS.N.hg38 C3L-01889 LUAD WXS blood_normal CPT0093760002 c2c323c4-a8f3-46e7-8eaf-28154ed2dbd9_wxs_gdc_realn.bam 37297195375 BAM harmonized CPTAC3 0cfc8eaa-d556-40d2-b131-5ade59b469c8 0ccfbb8682592b2f1c093d666196ce5a {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-01889.WXS.T C3L-01889 LUAD WXS tumor CPT0092240009 CPT0092240009.WholeExome.RP-1303.bam 30787306794 BAM aligned CPTAC3 185599fb-8254-49a4-b905-d1bfe7f8e817 0185640f80513cb6bf742d56364ac211 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor"} -C3L-01889.WXS.T.hg38 C3L-01889 LUAD WXS tumor CPT0092240009 e370556f-98bc-4182-8a75-9ef866159d07_wxs_gdc_realn.bam 42591807846 BAM harmonized CPTAC3 88d6418c-49f7-4ff8-a22a-ce1d0a783d68 81dd7faed1bb96a424e9bd808cf55e74 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor"} -C3L-01890.MethArray.Green.A C3L-01890 LUAD Methylation_Array tissue_normal CPT0092940009 203027390049_R02C01_Grn.idat 13676238 IDAT Green NA CPTAC3 1002be1a-2354-4f20-8a79-c1a26f786102 7232826ba996fd16ec3f9e66b0213612 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.MethArray.Red.A C3L-01890 LUAD Methylation_Array tissue_normal CPT0092940009 203027390049_R02C01_Red.idat 13676238 IDAT Red NA CPTAC3 956c15f9-5ac8-4067-b8b6-6d41edc9a71c 3f41b46c9b081715bd53eafa889bde82 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.miRNA-Seq.A.hg38 C3L-01890 LUAD miRNA-Seq tissue_normal CPT0092940006 3d5a36e2-3ce8-4fc6-806f-dec073ccd83d_mirnaseq_gdc_realn.bam 250776939 BAM harmonized CPTAC3 d8c10451-883d-447d-8ab5-aa31ddfca7a9 14d2794105fd7240aa1fce24f418ec84 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.miRNA-Seq.S10_L007_R1.A C3L-01890 LUAD miRNA-Seq tissue_normal CPT0092940006 181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L007_R1_001.unaln.bam 227465907 BAM S10_L007_R1 unaligned CPTAC3 daed6137-c7ca-4c0c-a5d3-91ee7d77407e 238ccac2680eb8c4690a649190334fcb {"aliquot_tag": "ALQ_abfb07f2", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.miRNA-Seq.S18_L007_R1.T C3L-01890 LUAD miRNA-Seq tumor CPT0092930006 180724_UNC32-K00270_0106_BHWK3MBBXX_TAATCG_S18_L007_R1_001.unaln.bam 230939181 BAM S18_L007_R1 unaligned CPTAC3 63e7ba48-114f-4de9-96d3-b8c8ebc4b4e3 933f82b765010428c3e0177fd2fe0ab4 {"aliquot_tag": "ALQ_19dbdbe2", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01890.miRNA-Seq.T.hg38 C3L-01890 LUAD miRNA-Seq tumor CPT0092930006 03d6b2d3-9a7d-4181-ac0b-efa7cc361c93_mirnaseq_gdc_realn.bam 250156689 BAM harmonized CPTAC3 1a252833-2300-4e45-87c8-5d1b7ef8bc9a 054543751cd4bee43c501f5464aa161f {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor"} -C3L-01890.RNA-Seq.chimeric.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.chimeric.gdc_realn.bam 92646272 BAM chimeric harmonized CPTAC3 6f91d261-89ec-46de-9cae-60e50d645d0a 38e77f64c115779de030a351059c5475 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.RNA-Seq.chimeric.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.chimeric.gdc_realn.bam 39090557 BAM chimeric harmonized CPTAC3 3a67231f-5a10-4daf-a94e-d4dbce61a40a 32fedb5be6e415320f3f694d89e8a20b {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor"} -C3L-01890.RNA-Seq.genomic.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.genomic.gdc_realn.bam 10855732567 BAM genomic harmonized CPTAC3 5038cfb2-bc06-4d21-b31c-43602ebd71c1 d1f3d6580b06907c58c019bebf15ffc3 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.RNA-Seq.genomic.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.genomic.gdc_realn.bam 7575863907 BAM genomic harmonized CPTAC3 74a683e7-c344-4b25-be72-36ee200a7b5d 623f2e2e6ea20ce178e22fd9a402ceec {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor"} -C3L-01890.RNA-Seq.S11_L003_R1.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3018396631 FASTQ S11_L003_R1 unaligned CPTAC3 2544d040-1537-4cb8-a8da-61e9395d927a cdbf156d5c59972ec3d44c05a9942872 {"aliquot_tag": "ALQ_19dbdbe2", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01890.RNA-Seq.S11_L003_R2.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3102211399 FASTQ S11_L003_R2 unaligned CPTAC3 b7e27776-3943-4b5f-898c-646a79090347 f2a74b28ac0754c2f1b4647faa8251df {"aliquot_tag": "ALQ_19dbdbe2", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01890.RNA-Seq.S13_L004_R1.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R1_001.fastq.gz 4705946368 FASTQ S13_L004_R1 unaligned CPTAC3 351b2fd3-ccff-4eff-8739-78092fee6813 2cd21dd60598aa5bd19bfc688e87abc8 {"aliquot_tag": "ALQ_abfb07f2", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.RNA-Seq.S13_L004_R2.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R2_001.fastq.gz 5205121434 FASTQ S13_L004_R2 unaligned CPTAC3 a366c7b2-49ec-434d-9877-0dacdd9d19f7 eae830c709b45615f3339ba5f3a06d12 {"aliquot_tag": "ALQ_abfb07f2", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.RNA-Seq.transcriptome.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.transcriptome.gdc_realn.bam 10847448525 BAM transcriptome harmonized CPTAC3 4bc48cd2-6761-4b44-a8db-17d3f041c11a 57363c9939bf56b746c364eaafcddf09 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.RNA-Seq.transcriptome.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.transcriptome.gdc_realn.bam 6389278993 BAM transcriptome harmonized CPTAC3 54c44c5f-5174-40de-8237-0c58daa18ddb 9d0c1e0d07ee63cffb22ca683dc2251a {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor"} -C3L-01890.WGS.A C3L-01890 LUAD WGS tissue_normal CPT0092940009 CPT0092940009.WholeGenome.RP-1303.bam 51906006480 BAM aligned CPTAC3 88d4a2be-69ec-4bfa-a48e-d94afd394cf8 1f687922e0a7c508adc30135e68b89cd {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.WGS.A.hg38 C3L-01890 LUAD WGS tissue_normal CPT0092940009 3cb61a96-02d8-427f-98b7-e02ccd6b15c6_wgs_gdc_realn.bam 75953152085 BAM harmonized CPTAC3 9214b79c-6b23-44be-ac92-9cdc13f22bcb 2c14136d80e8d39562087a2e78683c3c {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.WGS.N C3L-01890 LUAD WGS blood_normal CPT0093850002 CPT0093850002.WholeGenome.RP-1303.bam 62077605321 BAM aligned CPTAC3 b4112a26-7dcb-48ed-93da-b13a16b2817f 5a50e02b9ce3e39ea4452a4d5027e8bf {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01890.WGS.N.hg38 C3L-01890 LUAD WGS blood_normal CPT0093850002 aac3f36d-d012-4c6e-b245-62831ab85bcb_wgs_gdc_realn.bam 91322732909 BAM harmonized CPTAC3 95dc5389-e394-4d6a-a698-3a6deac14ac1 4c4bca067add17b74ab22300982d3dff {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01890.WGS.T C3L-01890 LUAD WGS tumor CPT0092930008 CPT0092930008.WholeGenome.RP-1303.bam 68952334953 BAM aligned CPTAC3 f761657b-5463-4563-ac5c-71527fc1ce04 8a6a9a17ee666ce46189555d25bf6fcd {"aliquot_tag": "ALQ_fe63f6e5", "gdc_sample_type": "Primary Tumor"} -C3L-01890.WGS.T.hg38 C3L-01890 LUAD WGS tumor CPT0092930008 aa0f3c6a-a011-424c-a1e1-4d1ae831708a_wgs_gdc_realn.bam 99889462884 BAM harmonized CPTAC3 61096ec5-cd2b-460a-bed8-f4dc97df91d5 dda11da65707c8c30b7d11e97344f7a6 {"aliquot_tag": "ALQ_fe63f6e5", "gdc_sample_type": "Primary Tumor"} -C3L-01890.WXS.A C3L-01890 LUAD WXS tissue_normal CPT0092940009 CPT0092940009.WholeExome.RP-1303.bam 30761907963 BAM aligned CPTAC3 09b8b545-e4e8-4c6e-bc91-ab4582f6486a e2af9063edfce52fffef29f01913d488 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.WXS.A.hg38 C3L-01890 LUAD WXS tissue_normal CPT0092940009 3cb61a96-02d8-427f-98b7-e02ccd6b15c6_wxs_gdc_realn.bam 42255875881 BAM harmonized CPTAC3 42372ca8-ef72-4b16-841b-3eebce0523c3 9e1843219bec05bd0a5cb58e67516498 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01890.WXS.N C3L-01890 LUAD WXS blood_normal CPT0093850002 CPT0093850002.WholeExome.RP-1303.bam 32848814340 BAM aligned CPTAC3 043821c6-aa8b-4c1d-845c-b8f990330d21 34bd3e7c7fa0f8a81a62e3c8dd2a3b38 {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01890.WXS.N.hg38 C3L-01890 LUAD WXS blood_normal CPT0093850002 aac3f36d-d012-4c6e-b245-62831ab85bcb_wxs_gdc_realn.bam 44814605858 BAM harmonized CPTAC3 79626fd7-3aa0-4a5d-924e-3a40123766b3 69946a0acae7f8237d99ea6c159115ff {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01913.MethArray.Green.T C3L-01913 UCEC Methylation_Array tumor CPT0092690009 202234380058_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 db7cc806-9a36-4f2b-b29f-7ac462e65b9c 4f96c4013bd64eb8becd41d259a2d2a4 {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor"} -C3L-01913.MethArray.Red.T C3L-01913 UCEC Methylation_Array tumor CPT0092690009 202234380058_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e74878ce-4ce8-4615-9b1e-313117a458f7 df9a43e8bad7ed12b5e9f3fb85b31a0f {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor"} -C3L-01913.miRNA-Seq.S14_L007_R1.T C3L-01913 UCEC miRNA-Seq tumor CPT0092690006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTAGCT_S14_L007_R1_001.unaln.bam 231214334 BAM S14_L007_R1 unaligned CPTAC3 8e105962-6212-430c-bb5b-a95b3e2257ce 54f8d6ef8971d4e2c1a7ad2de2175600 {"aliquot_tag": "ALQ_a23d7196", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01913.miRNA-Seq.T.hg38 C3L-01913 UCEC miRNA-Seq tumor CPT0092690006 c1f2d755-1831-41fc-adcf-d9b578376cca_mirnaseq_gdc_realn.bam 248897404 BAM harmonized CPTAC3 2a35f378-03be-4621-a9e8-47efd7292f3f b60cc714b102bdd9b3c4143bdc15940c {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.chimeric.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.chimeric.gdc_realn.bam 59515210 BAM chimeric harmonized CPTAC3 8c99de2d-07b7-43f0-9466-824e59fcc106 b85e799344b28d56025c07d0351818cb {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.chimeric.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.chimeric.gdc_realn.bam 163055348 BAM chimeric harmonized CPTAC3 a95dd0d9-bcb6-442e-b41e-1c3facce340f bbfc9ecbc944b45f31f795e8a9d595d5 {"aliquot_tag": "ALQ_13bd3f8b", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.genomic.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.genomic.gdc_realn.bam 9453913298 BAM genomic harmonized CPTAC3 839e2de6-e1ba-497f-83b9-e244231370d7 e5816f51c07a2ea8edfc228568e96528 {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.genomic.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.genomic.gdc_realn.bam 7803910955 BAM genomic harmonized CPTAC3 9115a129-a44b-4e5a-b7a1-42ab0f8ded86 4ba58ed82c4c8df7fdbe567e38bc08fe {"aliquot_tag": "ALQ_13bd3f8b", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.S14_L004_R1.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4601248333 FASTQ S14_L004_R1 unaligned CPTAC3 70e30d18-6c3f-4549-b219-5b0e97be092c 869c7634d9254cb68190cce263b39932 {"aliquot_tag": "ALQ_a23d7196", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.S14_L004_R2.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 5047006926 FASTQ S14_L004_R2 unaligned CPTAC3 8df62ec5-cdc4-40d0-8b10-161dd4b1efb2 cc2081d3c861e2a1c532c5477076f67e {"aliquot_tag": "ALQ_a23d7196", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.S67_R1.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R1_001.fastq.gz 4350941540 FASTQ S67_R1 unaligned CPTAC3 bd2fe1cb-dbc2-4498-a69e-fe07a9f191f1 86eb626e5e17b342c1b8b78f12710555 {"aliquot_tag": "ALQ_13bd3f8b", "sample": "S67", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.S67_R2.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R2_001.fastq.gz 4480725024 FASTQ S67_R2 unaligned CPTAC3 0213df11-ce3d-41e5-aa14-b5654801f0a7 95477b65b6d1cbd7e59b78222cbc5e80 {"aliquot_tag": "ALQ_13bd3f8b", "sample": "S67", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.transcriptome.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.transcriptome.gdc_realn.bam 11496008526 BAM transcriptome harmonized CPTAC3 d57ecc7e-a94d-43ee-87f1-b732d3178c8c b8ac8ecf1b397a8192b47a746b98e0c3 {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor"} -C3L-01913.RNA-Seq.transcriptome.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.transcriptome.gdc_realn.bam 3846723872 BAM transcriptome harmonized CPTAC3 bcf719bd-bf97-49cf-b714-02aacd63959d b22c6042d44d68bc23895f4d99948136 {"aliquot_tag": "ALQ_13bd3f8b", "gdc_sample_type": "Primary Tumor"} -C3L-01913.WGS.N C3L-01913 UCEC WGS blood_normal CPT0093810002 CPT0093810002.WholeGenome.RP-1303.bam 62236482235 BAM aligned CPTAC3 854e3fe8-3cc8-40fd-a73e-f565dae25be6 78ecee61d995d88609332e857dcc44be {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01913.WGS.N.hg38 C3L-01913 UCEC WGS blood_normal CPT0093810002 4801be53-7ce4-439a-8b46-0bfed31c515d_wgs_gdc_realn.bam 90000306221 BAM harmonized CPTAC3 191d2fa1-f55d-42e0-bb15-2849f3b31368 50c627ab36cf21c2c9d620cbb80df1c9 {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01913.WGS.T C3L-01913 UCEC WGS tumor CPT0092690009 CPT0092690009.WholeGenome.RP-1303.bam 61328268688 BAM aligned CPTAC3 63b6033e-9ca5-4e1d-a38e-f09f5ed8ba01 ccb4a6682afbc24442d4d700baf907fb {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor"} -C3L-01913.WGS.T.hg38 C3L-01913 UCEC WGS tumor CPT0092690009 7513413b-82b1-40da-b449-fd38788a2ab4_wgs_gdc_realn.bam 89756660322 BAM harmonized CPTAC3 7adb2d81-bcc8-45d5-96cb-aab61b369f61 3f5ffe5e7e1b417c3eaa31bc696764ae {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor"} -C3L-01913.WXS.N C3L-01913 UCEC WXS blood_normal CPT0093810002 CPT0093810002.WholeExome.RP-1303.bam 27719214392 BAM aligned CPTAC3 dd6f2082-f428-4329-901b-e4728ad62480 c307b45c5c268bd83fe5086e64f16ace {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01913.WXS.N.hg38 C3L-01913 UCEC WXS blood_normal CPT0093810002 4801be53-7ce4-439a-8b46-0bfed31c515d_wxs_gdc_realn.bam 37801903274 BAM harmonized CPTAC3 3d24c2e4-e333-44f8-ba03-82c17755ee54 92787da5f00ffba5b57bb912291466fe {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01913.WXS.T C3L-01913 UCEC WXS tumor CPT0092690009 CPT0092690009.WholeExome.RP-1303.bam 48206997086 BAM aligned CPTAC3 499bf192-5955-4cb3-9f05-640e9f656df0 604e894f2fc15a9e6205aa7f87827d25 {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor"} -C3L-01913.WXS.T.hg38 C3L-01913 UCEC WXS tumor CPT0092690009 7513413b-82b1-40da-b449-fd38788a2ab4_wxs_gdc_realn.bam 65710695751 BAM harmonized CPTAC3 a1eed798-0d7a-4bbd-b5b7-c331152cfba7 c1cb28d5d20b227baf912a7889df778e {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor"} -C3L-01924.MethArray.Green.A C3L-01924 LUAD Methylation_Array tissue_normal CPT0114690009 203027390120_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1f98cade-fee7-43b1-b319-236bb8050d7d 2e740ce347700d9b5dc2aa1045f997ad {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.MethArray.Green.T C3L-01924 LUAD Methylation_Array tumor CPT0114660010 202234370091_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 09524f6f-44d9-4e5b-af2f-1ad058186b78 14d0f01084991b41de77ab7832ea6f14 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor"} -C3L-01924.MethArray.Red.A C3L-01924 LUAD Methylation_Array tissue_normal CPT0114690009 203027390120_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 7c1f7c6e-ebcb-4245-9cda-3463fab0dca4 d9bfab30da715ba42599ba2a442797a2 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.MethArray.Red.T C3L-01924 LUAD Methylation_Array tumor CPT0114660010 202234370091_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 0b72db74-0f84-4ea4-8d62-558a93da521c 62e62c18d693e9b2df074e2bd775724e {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor"} -C3L-01924.miRNA-Seq.A.hg38 C3L-01924 LUAD miRNA-Seq tissue_normal CPT0114690006 5829500d-3be7-4dc3-a300-4fbdf0d513e0_mirnaseq_gdc_realn.bam 260442739 BAM harmonized CPTAC3 e1763d26-101b-4c30-b94b-e4c45ec6fcba 54b7d2dc3b478a8cb62cb588dce05d78 {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.miRNA-Seq.S44_L003_R1.T C3L-01924 LUAD miRNA-Seq tumor CPT0114660007 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L003_R1_001.unaln.bam 184333576 BAM S44_L003_R1 unaligned CPTAC3 595e1d46-46b6-4b33-ba34-2ce155351d09 d06ef6b3e8fec83e67ed15333320f8c6 {"aliquot_tag": "ALQ_f024ec1d", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01924.miRNA-Seq.S48_L006_R1.A C3L-01924 LUAD miRNA-Seq tissue_normal CPT0114690006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L006_R1_001.unaln.bam 234681361 BAM S48_L006_R1 unaligned CPTAC3 348869eb-4fd9-40ad-8b36-515230d07ad9 efb073880e952aec005e4a0952f53a14 {"aliquot_tag": "ALQ_5734b5a", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.miRNA-Seq.T.hg38 C3L-01924 LUAD miRNA-Seq tumor CPT0114660007 1796a55a-9b75-4a91-9a9d-e7477fd6bec7_mirnaseq_gdc_realn.bam 198915394 BAM harmonized CPTAC3 136d153c-b01c-4e8b-a7ce-88089157062e 61f29a75709c26af705ad9612f343b01 {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor"} -C3L-01924.RNA-Seq.chimeric.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.chimeric.gdc_realn.bam 142559969 BAM chimeric harmonized CPTAC3 92d17ce8-95d1-434d-8f6e-4f73c12e8eec 866adfd379c44bd8894737a75495ad31 {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.RNA-Seq.chimeric.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.chimeric.gdc_realn.bam 79399414 BAM chimeric harmonized CPTAC3 155e1674-741c-41ce-b48f-6939615b6b94 928a1a1a94a42403a4e9d96274c22a35 {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor"} -C3L-01924.RNA-Seq.genomic.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.genomic.gdc_realn.bam 8413520089 BAM genomic harmonized CPTAC3 a4f764e0-433b-41fd-ba71-69794e1e043d a9b6b4231fa6fccc9b3870a6582c7940 {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.RNA-Seq.genomic.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.genomic.gdc_realn.bam 9538924291 BAM genomic harmonized CPTAC3 3c6a5d52-3f28-4b1c-aeaf-fa1b2c045c4c 9f4ce346fb4817b425ad555c319c2a28 {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor"} -C3L-01924.RNA-Seq.S19_L005_R1.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 3944862404 FASTQ S19_L005_R1 unaligned CPTAC3 f3202189-6188-4c2c-b30b-220fb8f873a4 b43861f14178bf3ac1b3c89982c19326 {"aliquot_tag": "ALQ_f024ec1d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01924.RNA-Seq.S19_L005_R2.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 4424759148 FASTQ S19_L005_R2 unaligned CPTAC3 42468ec2-89bb-4647-8314-6eb5b72c5dcf 116bfd3908240d30f9e66ffbbc96d3b7 {"aliquot_tag": "ALQ_f024ec1d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01924.RNA-Seq.S9_L003_R1.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R1_001.fastq.gz 3994393963 FASTQ S9_L003_R1 unaligned CPTAC3 47ebb3cc-4874-43d7-9b49-d50364c8f922 d1a393a9a8e1e9c364e37d11a7cf4bcc {"aliquot_tag": "ALQ_5734b5a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.RNA-Seq.S9_L003_R2.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R2_001.fastq.gz 4364633215 FASTQ S9_L003_R2 unaligned CPTAC3 c7c5c55f-b29e-4831-8e07-8474fd44a183 1e2cb1dcec4337de9d4b1f95e2e95bfc {"aliquot_tag": "ALQ_5734b5a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.RNA-Seq.transcriptome.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.transcriptome.gdc_realn.bam 10646268618 BAM transcriptome harmonized CPTAC3 5c3952b3-5264-4d88-abe0-1533130f61a3 bdc748c92aa105f6b6c3046a62c4b64d {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.RNA-Seq.transcriptome.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.transcriptome.gdc_realn.bam 10236643935 BAM transcriptome harmonized CPTAC3 14848eaa-c911-4baf-8db8-b67adc810aae 5911948072817af288626e99d49e2cfe {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor"} -C3L-01924.WGS.A C3L-01924 LUAD WGS tissue_normal CPT0114690009 CPT0114690009.WholeGenome.RP-1303.bam 57910130683 BAM aligned CPTAC3 498223a9-65b4-477f-95d5-69bccc62285d 9d905a6e92feda1d84bd49cca36dded3 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.WGS.A.hg38 C3L-01924 LUAD WGS tissue_normal CPT0114690009 6181eeb8-6921-444e-94a1-4da0098707a5_wgs_gdc_realn.bam 86292484787 BAM harmonized CPTAC3 87ee1a55-5be9-4225-b678-17ab3e0a8dcf be8b3c04ae38b790dccbd9e4dbd12027 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.WGS.N C3L-01924 LUAD WGS blood_normal CPT0116660002 CPT0116660002.WholeGenome.RP-1303.bam 58979459237 BAM aligned CPTAC3 f2111973-d0c2-46dd-952a-8e4caba7ea3d 159affc40d123c61bbfe2100037f7417 {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01924.WGS.N.hg38 C3L-01924 LUAD WGS blood_normal CPT0116660002 d7d49f54-2e47-4f16-a3ee-48c85116d4ca_wgs_gdc_realn.bam 86087021911 BAM harmonized CPTAC3 0298bc8f-6f52-40d5-bbd1-73c180fb6c47 93849891685345e9eee33eb95eb1b36d {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01924.WGS.T C3L-01924 LUAD WGS tumor CPT0114660010 CPT0114660010.WholeGenome.RP-1303.bam 62409666015 BAM aligned CPTAC3 9c4ea902-9b89-4359-a08e-76d20863da2f 28c8bc4e73bea940a5032186c2af8c25 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor"} -C3L-01924.WGS.T.hg38 C3L-01924 LUAD WGS tumor CPT0114660010 6ff5d3f7-220b-41fc-9a8b-71827ce106df_wgs_gdc_realn.bam 90279306194 BAM harmonized CPTAC3 573e2944-f036-408f-acb7-2cbb0af8b135 0c3e46519d0d48a23a39deba717e5e4c {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor"} -C3L-01924.WXS.A C3L-01924 LUAD WXS tissue_normal CPT0114690009 CPT0114690009.WholeExome.RP-1303.bam 29316634742 BAM aligned CPTAC3 035496a1-538e-4d52-94af-cfa04ee56958 0d32c4ee24007845b453c62b4930ef66 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.WXS.A.hg38 C3L-01924 LUAD WXS tissue_normal CPT0114690009 6181eeb8-6921-444e-94a1-4da0098707a5_wxs_gdc_realn.bam 40173227093 BAM harmonized CPTAC3 fe136d24-0401-4307-bc8f-10f69de15286 f5349162db1eca3849dd5ac2ea0aedac {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01924.WXS.N C3L-01924 LUAD WXS blood_normal CPT0116660002 CPT0116660002.WholeExome.RP-1303.bam 36295245306 BAM aligned CPTAC3 94983a82-c77a-4958-b3af-54761109262b 86252e48251e2d0e001fa287b8a6e67f {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01924.WXS.N.hg38 C3L-01924 LUAD WXS blood_normal CPT0116660002 d7d49f54-2e47-4f16-a3ee-48c85116d4ca_wxs_gdc_realn.bam 48511497104 BAM harmonized CPTAC3 c923a07f-99a1-41fc-8981-dd61f7965f1a 005d34649d455b029b9520dd53a2c936 {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01924.WXS.T C3L-01924 LUAD WXS tumor CPT0114660010 CPT0114660010.WholeExome.RP-1303.bam 29126868563 BAM aligned CPTAC3 c2f846fe-8368-4169-a5c9-1242598cee24 0f3ffc82acb5b88d3e6d452f3ef3b372 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor"} -C3L-01924.WXS.T.hg38 C3L-01924 LUAD WXS tumor CPT0114660010 6ff5d3f7-220b-41fc-9a8b-71827ce106df_wxs_gdc_realn.bam 39612866816 BAM harmonized CPTAC3 b626240c-4a92-4c1d-ae72-391ed665a517 ccbfd051ceac4e25f413d8c514084e86 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor"} -C3L-01925.MethArray.Green.T C3L-01925 UCEC Methylation_Array tumor CPT0113690009 203027390073_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3653f810-7c65-4137-b569-e0eb57fa057a 2a942cf7acaa1f7b0cdfbfc9f376b60f {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor"} -C3L-01925.MethArray.Red.T C3L-01925 UCEC Methylation_Array tumor CPT0113690009 203027390073_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 f6e60b09-b5b0-4788-bcb7-3c8b371b8f52 fc2193cb87a96194482115de8b93db7d {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor"} -C3L-01925.miRNA-Seq.S37_L004_R1.T C3L-01925 UCEC miRNA-Seq tumor CPT0113690006 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L004_R1_001.unaln.bam 202959171 BAM S37_L004_R1 unaligned CPTAC3 53d2cd8d-025a-4aeb-bc20-29bd7ef4a5c6 31d5f181957a71900a9784fbf5497316 {"aliquot_tag": "ALQ_c0d475d4", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01925.miRNA-Seq.T.hg38 C3L-01925 UCEC miRNA-Seq tumor CPT0113690006 972e8bb4-5fec-49fd-bd6d-6b093a08df46_mirnaseq_gdc_realn.bam 225094293 BAM harmonized CPTAC3 3b339dc9-3143-47bb-ba30-818ed527d98b 0178952e6d0261260067afe6df4cb6d3 {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.chimeric.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.chimeric.gdc_realn.bam 48830455 BAM chimeric harmonized CPTAC3 d6361c40-2b19-4b6b-982d-bb7059e8ebe2 9ee49b4bc66393cfb8e8d38b26f938af {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.chimeric.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.chimeric.gdc_realn.bam 175052870 BAM chimeric harmonized CPTAC3 52e794ea-f43a-4b0f-9852-91873a884fb4 3218cb527ce52be136e5214f25077a85 {"aliquot_tag": "ALQ_910d52fe", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.genomic.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.genomic.gdc_realn.bam 8757986045 BAM genomic harmonized CPTAC3 f9ab070f-0beb-411c-ae08-fe5248d6561f 822a050770e6b7c5ba56c5c4c47e1e63 {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.genomic.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.genomic.gdc_realn.bam 7956687894 BAM genomic harmonized CPTAC3 46706ee6-9035-4e09-adf8-4f883ccb4f70 8db5c47fe72c4604d81d3e7e238dc9c6 {"aliquot_tag": "ALQ_910d52fe", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.S23_L006_R1.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3863935837 FASTQ S23_L006_R1 unaligned CPTAC3 49190371-ec2a-420f-a804-0931a346d206 945e2f9be6d5f170d69db929e6086bfd {"aliquot_tag": "ALQ_c0d475d4", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.S23_L006_R2.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4262715660 FASTQ S23_L006_R2 unaligned CPTAC3 c8dfbe14-a49c-4838-95c7-c9b9ed81633a fae4ed3c02b64640231cd03f7dcc312f {"aliquot_tag": "ALQ_c0d475d4", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.S68_R1.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R1_001.fastq.gz 4891982146 FASTQ S68_R1 unaligned CPTAC3 ab378c65-4d59-4ed0-82ac-73788de1353f db42dfa5823b255b8538d1734700e74b {"aliquot_tag": "ALQ_910d52fe", "sample": "S68", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.S68_R2.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R2_001.fastq.gz 5017968745 FASTQ S68_R2 unaligned CPTAC3 94266dde-525d-4c68-b8a1-366c98c8e111 ecfa7fa003e15f31c1345614075f2721 {"aliquot_tag": "ALQ_910d52fe", "sample": "S68", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.transcriptome.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.transcriptome.gdc_realn.bam 9065647464 BAM transcriptome harmonized CPTAC3 c1410f03-1891-482d-a942-73e9d6e53e3e f200aabb4a82792cd87c01cf7a3b1262 {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor"} -C3L-01925.RNA-Seq.transcriptome.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.transcriptome.gdc_realn.bam 3997983105 BAM transcriptome harmonized CPTAC3 b251751e-165d-4af3-bcd9-73eb541c9846 da3d5c006eba49bc25c542591f1d909c {"aliquot_tag": "ALQ_910d52fe", "gdc_sample_type": "Primary Tumor"} -C3L-01925.WGS.N C3L-01925 UCEC WGS blood_normal CPT0114410002 CPT0114410002.WholeGenome.RP-1303.bam 57704354295 BAM aligned CPTAC3 7a638708-ec54-448f-b793-18ff020a1f05 b242adf3001144e732d81e6c9abb5842 {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal"} -C3L-01925.WGS.N.hg38 C3L-01925 UCEC WGS blood_normal CPT0114410002 d354fd4a-1f75-4174-b0c9-10575ed3a4d5_wgs_gdc_realn.bam 83787352428 BAM harmonized CPTAC3 580c3cce-5125-41fd-933b-52017d1279e0 2f0da2b71921150ac5863fc13419055b {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal"} -C3L-01925.WGS.T C3L-01925 UCEC WGS tumor CPT0113690009 CPT0113690009.WholeGenome.RP-1303.bam 58877766330 BAM aligned CPTAC3 09eb163d-b367-4bee-8e85-fd7eb92e0af7 04bd955d6f46cd141d2acc2379d057c5 {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor"} -C3L-01925.WGS.T.hg38 C3L-01925 UCEC WGS tumor CPT0113690009 45a3f0fe-0662-4dfd-9f5e-f5b62faef683_wgs_gdc_realn.bam 87035481832 BAM harmonized CPTAC3 70147939-557e-46d7-852f-38e1c1e7be31 74e33f1fab9a5b616dd572a0d7b9dd5f {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor"} -C3L-01925.WXS.N C3L-01925 UCEC WXS blood_normal CPT0114410002 CPT0114410002.WholeExome.RP-1303.bam 34625203015 BAM aligned CPTAC3 38c5bbb9-3142-418c-ad0c-d74c8f2e217a 3cbef20b5c3df860b68a89462041bb76 {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal"} -C3L-01925.WXS.N.hg38 C3L-01925 UCEC WXS blood_normal CPT0114410002 d354fd4a-1f75-4174-b0c9-10575ed3a4d5_wxs_gdc_realn.bam 47051357678 BAM harmonized CPTAC3 ffc37f27-76c2-4df1-aaad-ed6f7d8e8ffb f795268cc58302eb9f0d7a71640d03b7 {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal"} -C3L-01925.WXS.T C3L-01925 UCEC WXS tumor CPT0113690009 CPT0113690009.WholeExome.RP-1303.bam 24839083207 BAM aligned CPTAC3 3d47985c-6c06-4b8b-ba91-cbe7815892a8 77189b687068cbc75909bae522e6ac70 {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor"} -C3L-01925.WXS.T.hg38 C3L-01925 UCEC WXS tumor CPT0113690009 45a3f0fe-0662-4dfd-9f5e-f5b62faef683_wxs_gdc_realn.bam 34356391143 BAM harmonized CPTAC3 dcefad95-d4c9-4736-b67e-7270c9e16673 d10e153a523be655b456dd1ac1a1a91b {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor"} -C3L-01929.MethArray.Green.T C3L-01929 CCRCC Methylation_Array tumor CPT0093020009 202234370086_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 da75b476-f87b-45f7-adc4-2ba0729666d8 e15fbc0eb31409ff1529e0c4fda770cf {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor"} -C3L-01929.MethArray.Red.T C3L-01929 CCRCC Methylation_Array tumor CPT0093020009 202234370086_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 14df697c-7230-4b7e-8218-e8882c66f20a 4790d209db2fe76110a5b913b1097c59 {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor"} -C3L-01929.miRNA-Seq.S20_L007_R1.T C3L-01929 CCRCC miRNA-Seq tumor CPT0093020006 180724_UNC32-K00270_0106_BHWK3MBBXX_TATAAT_S20_L007_R1_001.unaln.bam 300858536 BAM S20_L007_R1 unaligned CPTAC3 a7003ec8-f78b-4d06-9397-98fa109cbb70 91e415e008abc0d6973402e007f7f8f8 {"aliquot_tag": "ALQ_a5c3a82e", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01929.miRNA-Seq.T.hg38 C3L-01929 CCRCC miRNA-Seq tumor CPT0093020006 b2e497fa-18f1-4e2c-921b-75347f8dc258_mirnaseq_gdc_realn.bam 321524603 BAM harmonized CPTAC3 7a434fbf-c7f8-490b-8f0f-db3c382d25c6 92c363478f93948a4705117718523d2c {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor"} -C3L-01929.RNA-Seq.chimeric.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.chimeric.gdc_realn.bam 46870592 BAM chimeric harmonized CPTAC3 a11ee217-73fb-4ce6-a5e6-012b38ab6bb7 5a900bd9674c8b2d0b4d377ec83f1631 {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor"} -C3L-01929.RNA-Seq.genomic.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.genomic.gdc_realn.bam 9094283421 BAM genomic harmonized CPTAC3 236e4d69-c52a-423f-94ac-ee2178131c8a a88c4ed2c6bae61319076b98c15dca84 {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor"} -C3L-01929.RNA-Seq.S12_L003_R1.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 4262434556 FASTQ S12_L003_R1 unaligned CPTAC3 425cb3c9-c46d-4679-bffd-1112c63e7d35 401009e81efe18e0db8070c3e81d7274 {"aliquot_tag": "ALQ_a5c3a82e", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01929.RNA-Seq.S12_L003_R2.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4752782066 FASTQ S12_L003_R2 unaligned CPTAC3 0d41aaec-d8a2-48d3-983f-58be18dc53dd fc175ae6f60314b52a289bdf8f4cc2f7 {"aliquot_tag": "ALQ_a5c3a82e", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01929.RNA-Seq.transcriptome.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.transcriptome.gdc_realn.bam 11962873368 BAM transcriptome harmonized CPTAC3 c51a6746-7683-4f3d-8f5f-55c599ae0379 941b1d84becbb2e78a2d4cd7157f67a6 {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor"} -C3L-01929.WGS.N C3L-01929 CCRCC WGS blood_normal CPT0092450002 CPT0092450002.WholeGenome.RP-1303.bam 67886167849 BAM aligned CPTAC3 d4c45b6e-1006-4ed0-b075-c3585b19c960 529cf52992b28f4c0d7a2f390c279d18 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal"} -C3L-01929.WGS.N.hg38 C3L-01929 CCRCC WGS blood_normal CPT0092450002 ca6848da-0250-4723-987d-9c5ecd76b3dd_wgs_gdc_realn.bam 99318565296 BAM harmonized CPTAC3 9454f0db-f2e5-4396-82a5-18e8e6e37aa1 067d89a67018ddf5888ff6eebec325a7 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal"} -C3L-01929.WGS.T C3L-01929 CCRCC WGS tumor CPT0093020009 CPT0093020009.WholeGenome.RP-1303.bam 67894329757 BAM aligned CPTAC3 0100d080-7b6c-4c76-8738-b3e7e3c11956 adff5524f377abe32e484b7927823b0b {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor"} -C3L-01929.WGS.T.hg38 C3L-01929 CCRCC WGS tumor CPT0093020009 4804b657-2af6-424f-a834-9a1f96b91ac6_wgs_gdc_realn.bam 99873185052 BAM harmonized CPTAC3 219385da-fb51-4f43-812f-b5bffdc1298b b2dd3a1cdd7db3bb1d08b38a7280a271 {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor"} -C3L-01929.WXS.N C3L-01929 CCRCC WXS blood_normal CPT0092450002 CPT0092450002.WholeExome.RP-1303.bam 38069337126 BAM aligned CPTAC3 bc3633da-2c19-469c-8a74-330f854f35e6 d3071ef99740a1fb712a87559a30dc77 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal"} -C3L-01929.WXS.N.hg38 C3L-01929 CCRCC WXS blood_normal CPT0092450002 ca6848da-0250-4723-987d-9c5ecd76b3dd_wxs_gdc_realn.bam 50849395912 BAM harmonized CPTAC3 5daa1c3f-9f66-4450-a73f-638f1944e667 d47be072ca7f81ac9e2030d2f88d76f2 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal"} -C3L-01929.WXS.T C3L-01929 CCRCC WXS tumor CPT0093020009 CPT0093020009.WholeExome.RP-1303.bam 38984431848 BAM aligned CPTAC3 da6b6bee-c1c0-4503-ab4c-0113ded61b06 f9670a96773c0cc16b3db32f3fb2751c {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor"} -C3L-01929.WXS.T.hg38 C3L-01929 CCRCC WXS tumor CPT0093020009 4804b657-2af6-424f-a834-9a1f96b91ac6_wxs_gdc_realn.bam 52906726695 BAM harmonized CPTAC3 e60c90ca-2366-49ef-9924-8d8a02fff0fd 5113b37114bbbdeec2345268cf301cf9 {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor"} -C3L-01951.MethArray.Green.T C3L-01951 CCRCC Methylation_Array tumor CPT0092680009 202234380051_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 57d23684-46c5-46e4-bdd9-7ae1f4ec617b 6f1f7802f7b7090c67446e48047f9bed {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor"} -C3L-01951.MethArray.Red.T C3L-01951 CCRCC Methylation_Array tumor CPT0092680009 202234380051_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 0a87bfde-b667-4aef-a18a-a58d1a849707 c4f6e8d09c00f5f4bb528efbed42cd6d {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor"} -C3L-01951.miRNA-Seq.S19_L007_R1.T C3L-01951 CCRCC miRNA-Seq tumor CPT0092680006 180724_UNC32-K00270_0106_BHWK3MBBXX_TACAGC_S19_L007_R1_001.unaln.bam 240017858 BAM S19_L007_R1 unaligned CPTAC3 666291bb-adce-4738-91c7-b82ee7ebc250 cdd723918ef410b868fd85a01c55e1cb {"aliquot_tag": "ALQ_9f5d5826", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01951.miRNA-Seq.T.hg38 C3L-01951 CCRCC miRNA-Seq tumor CPT0092680006 7959928f-94f4-4777-9047-b79b60fa5c31_mirnaseq_gdc_realn.bam 264062183 BAM harmonized CPTAC3 5151591e-c4b2-4ba4-b4d4-c24a18eb1449 2dc89b79272966bb857be7936be2c003 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor"} -C3L-01951.RNA-Seq.chimeric.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.chimeric.gdc_realn.bam 53657126 BAM chimeric harmonized CPTAC3 20cfd6ad-e0df-4ac7-bdb1-fe732ad938f3 42e741bd0666c200c8829367c08d43d4 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor"} -C3L-01951.RNA-Seq.genomic.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.genomic.gdc_realn.bam 9932412366 BAM genomic harmonized CPTAC3 a8fd2ef9-68b7-4d6f-bded-8dc75f77d1eb 93019ce09ea3315f8c1d8ee83bd3fc33 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor"} -C3L-01951.RNA-Seq.S10_L003_R1.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4841246897 FASTQ S10_L003_R1 unaligned CPTAC3 abfe4735-2c06-4aae-bde6-b1e11bfdcb76 a15e34a299d1eb9754c938544df0e2c4 {"aliquot_tag": "ALQ_9f5d5826", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01951.RNA-Seq.S10_L003_R2.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 5357433664 FASTQ S10_L003_R2 unaligned CPTAC3 8b135a11-9e76-4ae6-bc74-6709f1a08a78 1cf931f2b869eaddf85323a8b91dfbe1 {"aliquot_tag": "ALQ_9f5d5826", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01951.RNA-Seq.transcriptome.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.transcriptome.gdc_realn.bam 11966698842 BAM transcriptome harmonized CPTAC3 1855acac-a809-437d-a8a0-12a9e60b28b9 245382c8fed70d285eebd8a6d5606c29 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor"} -C3L-01951.WGS.N C3L-01951 CCRCC WGS blood_normal CPT0092080002 CPT0092080002.WholeGenome.RP-1303.bam 60990182128 BAM aligned CPTAC3 9711e3ee-860b-4047-85ee-8f78aa9cb392 068beb58a53c68f3ebc1d330de070b6b {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal"} -C3L-01951.WGS.N.hg38 C3L-01951 CCRCC WGS blood_normal CPT0092080002 8a1463a4-c097-44d5-90f9-12a9de165331_wgs_gdc_realn.bam 89111027479 BAM harmonized CPTAC3 8be84ec2-69b2-4790-b39b-c12bd66be181 4f27f0452e91c2c7caf537e503970b0a {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal"} -C3L-01951.WGS.T C3L-01951 CCRCC WGS tumor CPT0092680009 CPT0092680009.WholeGenome.RP-1303.bam 62525625914 BAM aligned CPTAC3 d57e7fcf-16e8-41ac-a089-367c886db14c 7c50b3f6de02260a093bbd68756ea9a3 {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor"} -C3L-01951.WGS.T.hg38 C3L-01951 CCRCC WGS tumor CPT0092680009 d573dd3c-2423-44de-a547-d6695634a28d_wgs_gdc_realn.bam 91420814247 BAM harmonized CPTAC3 b25c1abb-6812-4b71-89ff-bfb299abf74f 22e3c2f98e6a19c18679e0c5376a71f5 {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor"} -C3L-01951.WXS.N C3L-01951 CCRCC WXS blood_normal CPT0092080002 CPT0092080002.WholeExome.RP-1303.bam 24503399630 BAM aligned CPTAC3 c1a62e2d-1e4f-474e-b8d4-c7cf148d4c78 ecbe3e15269f7485b7a059dc9d102f90 {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal"} -C3L-01951.WXS.N.hg38 C3L-01951 CCRCC WXS blood_normal CPT0092080002 8a1463a4-c097-44d5-90f9-12a9de165331_wxs_gdc_realn.bam 33905559933 BAM harmonized CPTAC3 5de50014-322e-4443-a2b4-a35c13f7d07b b52b288e73191bd7d461052530d5330e {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal"} -C3L-01951.WXS.T C3L-01951 CCRCC WXS tumor CPT0092680009 CPT0092680009.WholeExome.RP-1303.bam 38620542818 BAM aligned CPTAC3 a3ea9cdf-db2d-43e1-be6e-b3287b614ec8 8adba934a6aaa662e8c105aa9965b57f {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor"} -C3L-01951.WXS.T.hg38 C3L-01951 CCRCC WXS tumor CPT0092680009 d573dd3c-2423-44de-a547-d6695634a28d_wxs_gdc_realn.bam 52353981097 BAM harmonized CPTAC3 a288c0c0-4928-491c-a473-f5ad4c302779 1c37e8a7aba3234adaff76125f5119bd {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor"} -C3L-01952.MethArray.Green.T C3L-01952 CCRCC Methylation_Array tumor CPT0093070009 202234380054_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c978540f-11a8-4ff6-82d2-e56274fbe61f 6001b6a13a77a779644f2ed5cea08d6d {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor"} -C3L-01952.MethArray.Red.T C3L-01952 CCRCC Methylation_Array tumor CPT0093070009 202234380054_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 3e40f216-e93e-4ea2-8548-7cba6396d781 84e9ff23a82cfbad98cbbec428b75ce4 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor"} -C3L-01952.miRNA-Seq.S14_L003_R1.T C3L-01952 CCRCC miRNA-Seq tumor CPT0093070006 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L003_R1_001.unaln.bam 197421541 BAM S14_L003_R1 unaligned CPTAC3 4d364adb-11d1-4aaa-864d-000bb20b57a4 80c2d14cf4d5bbc00a7f31815c7c011a {"aliquot_tag": "ALQ_6d23275e", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01952.miRNA-Seq.T.hg38 C3L-01952 CCRCC miRNA-Seq tumor CPT0093070006 6f623f89-6cfd-45f4-9e4c-228af8eaa4d3_mirnaseq_gdc_realn.bam 222580225 BAM harmonized CPTAC3 b5bc07b2-2d4e-4576-9972-3ebb62fd592a 717db379792924137241674429852d55 {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor"} -C3L-01952.RNA-Seq.chimeric.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.chimeric.gdc_realn.bam 57314023 BAM chimeric harmonized CPTAC3 226a01ae-c415-47cc-9dd5-49e125592e6d 3700ec2f8f90804867abf6e06555aac1 {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor"} -C3L-01952.RNA-Seq.genomic.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.genomic.gdc_realn.bam 9945047073 BAM genomic harmonized CPTAC3 43cef7f6-da31-432f-9bb3-d5a2e44b906d 4fd99a8f04c9782883ed300d95df0bc3 {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor"} -C3L-01952.RNA-Seq.S4_L006_R1.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R1_001.fastq.gz 4909231779 FASTQ S4_L006_R1 unaligned CPTAC3 5ef0270e-595b-4181-94d2-c72989ab949b 2434d48463804ed70bd60d478779de65 {"aliquot_tag": "ALQ_6d23275e", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01952.RNA-Seq.S4_L006_R2.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R2_001.fastq.gz 5276145027 FASTQ S4_L006_R2 unaligned CPTAC3 849811f6-e2aa-4a1d-9965-f3e31f03ee6a a9ed5ff43bb228dab1d75f4220818d05 {"aliquot_tag": "ALQ_6d23275e", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01952.RNA-Seq.transcriptome.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.transcriptome.gdc_realn.bam 12766365814 BAM transcriptome harmonized CPTAC3 d4198276-1145-41b6-a3e7-bf22c730ce36 5c388b3b4be4b0da2b971556db7052de {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor"} -C3L-01952.WGS.N C3L-01952 CCRCC WGS blood_normal CPT0092580002 CPT0092580002.WholeGenome.RP-1303.bam 57783014868 BAM aligned CPTAC3 ec0377f4-5eb5-46b9-a2aa-385d5b40fd0e 5523a2529ad14620fe3f30a46efdce37 {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal"} -C3L-01952.WGS.N.hg38 C3L-01952 CCRCC WGS blood_normal CPT0092580002 1f0715e3-3fde-4e61-b248-4c7dcb86886d_wgs_gdc_realn.bam 86444512659 BAM harmonized CPTAC3 bcd8f8b3-ee1f-4cf9-88d7-090b2f390918 9f9ae4bc92eee80e6680a47bd03ed1cf {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal"} -C3L-01952.WGS.T C3L-01952 CCRCC WGS tumor CPT0093070009 CPT0093070009.WholeGenome.RP-1303.bam 59887820196 BAM aligned CPTAC3 5f7f0673-6e13-48f4-b044-e80b7247c12b afc3d2cacf17cfe625bf32c3905966a4 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor"} -C3L-01952.WGS.T.hg38 C3L-01952 CCRCC WGS tumor CPT0093070009 2b640f2a-eb23-4508-8593-b4d76c73913b_wgs_gdc_realn.bam 88685411162 BAM harmonized CPTAC3 d01beacc-7cf3-4842-b022-2bd110be5620 de46f98fc05406dc174237f4a139481a {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor"} -C3L-01952.WXS.N C3L-01952 CCRCC WXS blood_normal CPT0092580002 CPT0092580002.WholeExome.RP-1303.bam 31073872171 BAM aligned CPTAC3 ad5ff4fc-557d-4d5a-ae20-59f12148864d 108c5c7265855cd6ebf3dcb9a6892787 {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal"} -C3L-01952.WXS.N.hg38 C3L-01952 CCRCC WXS blood_normal CPT0092580002 1f0715e3-3fde-4e61-b248-4c7dcb86886d_wxs_gdc_realn.bam 43287658280 BAM harmonized CPTAC3 0c74a6b2-f9f1-4641-9c8c-dbad0f39ba14 1a942d70534983af5c77efed80642769 {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal"} -C3L-01952.WXS.T C3L-01952 CCRCC WXS tumor CPT0093070009 CPT0093070009.WholeExome.RP-1303.bam 43009120927 BAM aligned CPTAC3 5405428d-730c-4738-8858-b5217a9f781a fbcad3a633bf2dc7f5f3b367971e8301 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor"} -C3L-01952.WXS.T.hg38 C3L-01952 CCRCC WXS tumor CPT0093070009 2b640f2a-eb23-4508-8593-b4d76c73913b_wxs_gdc_realn.bam 58512009824 BAM harmonized CPTAC3 3d413a47-b5a9-4091-bace-ce74e528532c a93f5b6cccbe5c937b600242503443a3 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor"} -C3L-01953.MethArray.Green.T C3L-01953 CCRCC Methylation_Array tumor CPT0389860006 205555380161_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 2a05a35c-6466-4b83-913a-9d1f02a67848 1f465a42268cab3b3b896d5e4a35128f {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor"} -C3L-01953.MethArray.Red.T C3L-01953 CCRCC Methylation_Array tumor CPT0389860006 205555380161_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 da5a0e20-9508-4c2c-a7b1-c48051d91cfa 6f26a4b030db2b47564ba2bbfe97df70 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor"} -C3L-01953.miRNA-Seq.S23_L002_R1.T C3L-01953 CCRCC miRNA-Seq tumor CPT0389860009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAGGCG_S23_L002_R1_001.unaln.bam 256144230 BAM S23_L002_R1 unaligned CPTAC3 f792aa6c-6350-4ec2-89b6-2502b2a307d5 485450dd3ee89c1661575ff34bdf6953 {"aliquot_tag": "ALQ_7df8f207", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01953.miRNA-Seq.T.hg38 C3L-01953 CCRCC miRNA-Seq tumor CPT0389860009 60364281-c8a1-4ea1-9fa0-d0b864c35ab2_mirnaseq_gdc_realn.bam 283007837 BAM harmonized CPTAC3 0c378294-0b05-4ecc-a186-8a560ca5e0e0 b8290527af5def33baffdcafafe4fe0c {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor"} -C3L-01953.RNA-Seq.chimeric.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.chimeric.gdc_realn.bam 304469429 BAM chimeric harmonized CPTAC3 2ea7da44-eff0-49c0-b16f-329c2402a394 3930ac3d0e347697027a445434052105 {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor"} -C3L-01953.RNA-Seq.genomic.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.genomic.gdc_realn.bam 8744668672 BAM genomic harmonized CPTAC3 33b2846b-8899-4abc-b8f3-b5e5d46a40b7 737837aee72e92b8b38d5c340d5284b6 {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor"} -C3L-01953.RNA-Seq.S4_L001_R1.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R1_001.fastq.gz 4046894466 FASTQ S4_L001_R1 unaligned CPTAC3 c6c161f7-0723-4a50-ae25-7fd30c277842 19e9f466177c3efc508f7f87c2984892 {"aliquot_tag": "ALQ_7df8f207", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01953.RNA-Seq.S4_L001_R2.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R2_001.fastq.gz 4687825641 FASTQ S4_L001_R2 unaligned CPTAC3 df994857-d183-4299-8120-f79f0f49d65b 41ee0b0038c1bee5dae4785153c7880a {"aliquot_tag": "ALQ_7df8f207", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01953.RNA-Seq.transcriptome.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.transcriptome.gdc_realn.bam 12282526354 BAM transcriptome harmonized CPTAC3 37f421a0-a5c1-465d-ad1a-faab75e940d3 df705c33a8314e024578b3050d9969ef {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor"} -C3L-01953.scRNA-Seq.S3_L003_R1.T C3L-01953 CCRCC scRNA-Seq tumor CPT0389860004 20220127_WUSTL_TWFU-CPT0389860004-Y1N1Z1_1Bn1_1_AAGATTGGAT+AGCGGGATTT_S3_L003_R1_001.fastq.gz 7360193697 FASTQ S3_L003_R1 unaligned CPTAC3 922c40e4-ec33-448f-809f-1ca0014ed955 d8d2d87458c989a9bcdc758afd682e26 {"aliquot_tag": "ALQ_3498eba", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01953.scRNA-Seq.S3_L003_R2.T C3L-01953 CCRCC scRNA-Seq tumor CPT0389860004 20220127_WUSTL_TWFU-CPT0389860004-Y1N1Z1_1Bn1_1_AAGATTGGAT+AGCGGGATTT_S3_L003_R2_001.fastq.gz 25768579998 FASTQ S3_L003_R2 unaligned CPTAC3 15d0b6de-9266-4945-a12b-792e1f1a1324 96b85fed617368af64446fbc1e28ca4a {"aliquot_tag": "ALQ_3498eba", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01953.WGS.N C3L-01953 CCRCC WGS blood_normal CPT0389890002 CPT0389890002.WholeGenome.RP-2158.bam 24317435491 BAM aligned CPTAC3 55eab932-5116-4113-b926-0efad3c05d3b 02d455349dc8c7aeb14ef8aee8f7413d {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01953.WGS.N.hg38 C3L-01953 CCRCC WGS blood_normal CPT0389890002 3cb5aaf6-03d9-4719-abde-4112902ed551_wgs_gdc_realn.bam 74701967279 BAM harmonized CPTAC3 4911fc07-7453-4114-9e31-8f1dbd44e011 692eb62bade20d5934b5c85e61a1a5ee {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01953.WGS.T C3L-01953 CCRCC WGS tumor CPT0389860006 CPT0389860006.WholeGenome.RP-2158.bam 26360311209 BAM aligned CPTAC3 4498028a-bc11-4d4b-8946-2dae351f9681 39e9a204114370658c170d2030cb6e23 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor"} -C3L-01953.WGS.T.hg38 C3L-01953 CCRCC WGS tumor CPT0389860006 71dffcf8-bc0e-41c8-b340-0b3ecb450063_wgs_gdc_realn.bam 80714218630 BAM harmonized CPTAC3 8c0b42ed-ed2e-42c4-97b2-b5483caf96aa 237be51ca5a54a7532f006ed3aec1f96 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor"} -C3L-01953.WXS.N C3L-01953 CCRCC WXS blood_normal CPT0389890002 CPT0389890002.WholeExome.RP-1303.bam 22501581223 BAM aligned CPTAC3 a70298c3-bc36-44c7-810d-aa929f1df0c9 9ac57fda136b647906ad78eb666bc778 {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01953.WXS.N.hg38 C3L-01953 CCRCC WXS blood_normal CPT0389890002 3cb5aaf6-03d9-4719-abde-4112902ed551_wxs_gdc_realn.bam 30922073614 BAM harmonized CPTAC3 771a2d1e-15f6-4eb0-9625-2d5fc985a518 e861fa107a1522aff07eac2329f14034 {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01953.WXS.T C3L-01953 CCRCC WXS tumor CPT0389860006 CPT0389860006.WholeExome.RP-1303.bam 22690457134 BAM aligned CPTAC3 c37d63b7-910d-45ca-87bf-31a8de545288 4f5c21473960a0a438250fa63c4def71 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor"} -C3L-01953.WXS.T.hg38 C3L-01953 CCRCC WXS tumor CPT0389860006 71dffcf8-bc0e-41c8-b340-0b3ecb450063_wxs_gdc_realn.bam 31455006235 BAM harmonized CPTAC3 2eff19f5-fb55-486a-b882-78868c62c88c e4ac5c77847c2e7b5f74320b75d458f9 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor"} -C3L-01954.MethArray.Green.T C3L-01954 CCRCC Methylation_Array tumor CPT0100590009 202234380094_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b98c16ac-0776-45fe-a685-f0fd8d31acbd 88704ad21ecd4402f5f7e800945caeb2 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor"} -C3L-01954.MethArray.Red.T C3L-01954 CCRCC Methylation_Array tumor CPT0100590009 202234380094_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 fd3081ef-f85f-4a0b-a041-41beb60988c5 1543d9abb8f4bbcfecf7fff604880d88 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor"} -C3L-01954.miRNA-Seq.S14_L006_R1.T C3L-01954 CCRCC miRNA-Seq tumor CPT0100590006 180828_UNC32-K00270_0112_AHWTLNBBXX_CGTACG_S14_L006_R1_001.unaln.bam 200639592 BAM S14_L006_R1 unaligned CPTAC3 3aa306ca-80e6-46f7-b94d-d857144bc047 cb5b65338452b878eece8db4f16b7e13 {"aliquot_tag": "ALQ_bb021d79", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01954.miRNA-Seq.T.hg38 C3L-01954 CCRCC miRNA-Seq tumor CPT0100590006 5cbfd8b9-a462-4b06-b992-aa1e6e06d1b4_mirnaseq_gdc_realn.bam 228179884 BAM harmonized CPTAC3 301c14bb-2d45-429d-bb93-c0780171e3e8 55fd44f4bf696bc38a04257f07b35b9b {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor"} -C3L-01954.RNA-Seq.chimeric.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.chimeric.gdc_realn.bam 41246956 BAM chimeric harmonized CPTAC3 052933d7-49c0-47a2-9624-fa65e5f45692 0c458f42fa963c7c8bbb9f18ae58098f {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor"} -C3L-01954.RNA-Seq.genomic.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.genomic.gdc_realn.bam 9639771665 BAM genomic harmonized CPTAC3 180be7f0-49e5-4a4f-8b9b-257a326ddf58 9d89fa401f43162ec143661fca01933f {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor"} -C3L-01954.RNA-Seq.S17_L005_R1.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R1_001.fastq.gz 4305539235 FASTQ S17_L005_R1 unaligned CPTAC3 a075910a-daa2-4e5c-b542-062ee3c4eb3e cb66ad943636d2f4cc3facea5c13a7f3 {"aliquot_tag": "ALQ_bb021d79", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01954.RNA-Seq.S17_L005_R2.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R2_001.fastq.gz 4731489217 FASTQ S17_L005_R2 unaligned CPTAC3 1b07305e-9e61-48dc-bca3-bb14bda008b4 5b4c9f23f031a93f4db5daf8302ae062 {"aliquot_tag": "ALQ_bb021d79", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01954.RNA-Seq.transcriptome.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.transcriptome.gdc_realn.bam 11182131610 BAM transcriptome harmonized CPTAC3 a15fe031-54c3-43dd-b8be-5e735092a246 d2a5e4b017e48cbb0d5ce08715f66e55 {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor"} -C3L-01954.WGS.N C3L-01954 CCRCC WGS blood_normal CPT0101990002 CPT0101990002.WholeGenome.RP-1303.bam 59783206052 BAM aligned CPTAC3 21f6b6db-086f-4084-8f81-b190aa6fec25 3ea138fe035c58891592c3f007c2194a {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal"} -C3L-01954.WGS.N.hg38 C3L-01954 CCRCC WGS blood_normal CPT0101990002 70e1b9a5-a805-4e1b-920b-f770dbfa406f_wgs_gdc_realn.bam 88173375107 BAM harmonized CPTAC3 c8c18a96-89ad-4f46-924c-ef352ed45dbc 3316530c8a6e57dcf32c674a134e17f2 {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal"} -C3L-01954.WGS.T C3L-01954 CCRCC WGS tumor CPT0100590009 CPT0100590009.WholeGenome.RP-1303.bam 60629016496 BAM aligned CPTAC3 3003724c-137d-4762-b7dd-5e0cd39956c7 eda81227978ebcab8e43abfef85e0111 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor"} -C3L-01954.WGS.T.hg38 C3L-01954 CCRCC WGS tumor CPT0100590009 87bfb077-3dcd-4d12-ab63-68aec924ee5e_wgs_gdc_realn.bam 89494675722 BAM harmonized CPTAC3 58c061c5-bfd6-4c75-9a52-c51b3d514343 72b99f65b057a00db30243a886c0c093 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor"} -C3L-01954.WXS.N C3L-01954 CCRCC WXS blood_normal CPT0101990002 CPT0101990002.WholeExome.RP-1303.bam 30763940607 BAM aligned CPTAC3 6a6de6d3-9728-47c4-abdf-925252741668 3c1ea07e42452f95bed677c0577c1fe7 {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal"} -C3L-01954.WXS.N.hg38 C3L-01954 CCRCC WXS blood_normal CPT0101990002 70e1b9a5-a805-4e1b-920b-f770dbfa406f_wxs_gdc_realn.bam 42121746883 BAM harmonized CPTAC3 37e28a21-c26c-40e8-a686-d360af87b69f 3a0d8f7439c452ad9984333dfc1f3475 {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal"} -C3L-01954.WXS.T C3L-01954 CCRCC WXS tumor CPT0100590009 CPT0100590009.WholeExome.RP-1303.bam 48784482855 BAM aligned CPTAC3 1d5012f4-05aa-4bce-a9fb-6a6b0a3ee22f 9d8dd76247f51ad59b6cb7b80809af6a {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor"} -C3L-01954.WXS.T.hg38 C3L-01954 CCRCC WXS tumor CPT0100590009 87bfb077-3dcd-4d12-ab63-68aec924ee5e_wxs_gdc_realn.bam 68034931222 BAM harmonized CPTAC3 9696cdca-4cf4-48fd-840e-e8d94ab23047 33404d8f05769f68d20f76a7e2db8556 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor"} -C3L-01955.MethArray.Green.T C3L-01955 CCRCC Methylation_Array tumor CPT0389780006 205549610122_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 f4bab191-c7d3-414c-96bd-4d15a2855e02 4320e6ea495099a75a84904036d42aca {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor"} -C3L-01955.MethArray.Red.T C3L-01955 CCRCC Methylation_Array tumor CPT0389780006 205549610122_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 eb45e4c6-ec4c-4ec2-81e2-3598659940ca 29cf7bce451a79f4d6e62b313f83daed {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor"} -C3L-01955.miRNA-Seq.A.hg38 C3L-01955 CCRCC miRNA-Seq tissue_normal CPT0389790006 69120396-3160-4423-a01e-78816e1e54c6_mirnaseq_gdc_realn.bam 260186350 BAM harmonized CPTAC3 c80e2aff-16a5-4317-8888-14119d244303 2bee806e989fc7f31d9e587f4f6779ba {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01955.miRNA-Seq.S21_L002_R1.T C3L-01955 CCRCC miRNA-Seq tumor CPT0389780009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACGAT_S21_L002_R1_001.unaln.bam 350267548 BAM S21_L002_R1 unaligned CPTAC3 91fa9483-6b94-440c-b359-d1b9fff67fb0 e11276d538f55fe0b7671d0bf15ea6c5 {"aliquot_tag": "ALQ_339efeb3", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01955.miRNA-Seq.S22_L002_R1.A C3L-01955 CCRCC miRNA-Seq tissue_normal CPT0389790006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACTCA_S22_L002_R1_001.unaln.bam 240548230 BAM S22_L002_R1 unaligned CPTAC3 f54e4800-5397-48a3-9385-b9e862b6b2f4 6d270cfb27046cb80fccaf670b10535f {"aliquot_tag": "ALQ_9e41ca92", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01955.miRNA-Seq.T.hg38 C3L-01955 CCRCC miRNA-Seq tumor CPT0389780009 2c4adf73-52b1-49e4-85bf-bb5dd4fe926e_mirnaseq_gdc_realn.bam 368055796 BAM harmonized CPTAC3 71285416-c4d2-4391-ad03-cf18bbf14633 6839e1c865705b787c71021f8d1f67bf {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor"} -C3L-01955.RNA-Seq.chimeric.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.chimeric.gdc_realn.bam 360701574 BAM chimeric harmonized CPTAC3 4d478c73-6512-49b3-bf4a-e7262b723d96 a01a2d77fc2428574f8f347e0363a3d9 {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01955.RNA-Seq.chimeric.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.chimeric.gdc_realn.bam 316056498 BAM chimeric harmonized CPTAC3 9535c628-859c-4dbc-a73e-c4adfd57917c a8e90349718af9e85d953873606c44c4 {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor"} -C3L-01955.RNA-Seq.genomic.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.genomic.gdc_realn.bam 9395468569 BAM genomic harmonized CPTAC3 0bff5c0b-6db6-4c40-9ce7-1824bbc39bda c4750c2b4de32359aea30c2d64b8284b {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01955.RNA-Seq.genomic.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.genomic.gdc_realn.bam 7708085510 BAM genomic harmonized CPTAC3 9f7624ac-3af5-424d-818f-911a2f252807 2606b1fee1796e2a36a7f4b72ec4dfcb {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor"} -C3L-01955.RNA-Seq.S5_L002_R1.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4386644868 FASTQ S5_L002_R1 unaligned CPTAC3 f0027f05-021f-4d6d-9cd9-cab0b7c749be 11054fbb78120adcc2d406a63dd4a1a5 {"aliquot_tag": "ALQ_9e41ca92", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01955.RNA-Seq.S5_L002_R2.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4865849887 FASTQ S5_L002_R2 unaligned CPTAC3 002dd006-1655-4802-9903-4b3ac4867ab7 de18cf0dc168d671ae30253c8ef02642 {"aliquot_tag": "ALQ_9e41ca92", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01955.RNA-Seq.S7_L002_R1.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3596194595 FASTQ S7_L002_R1 unaligned CPTAC3 7bc34a21-c808-4b08-a241-bb54f02949e7 4e60c5b554a7bec630e8e9b8ac9ea062 {"aliquot_tag": "ALQ_339efeb3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01955.RNA-Seq.S7_L002_R2.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3970339191 FASTQ S7_L002_R2 unaligned CPTAC3 46af4790-fdce-4e91-bce0-b64ff7e6adcb 7854b11c933fa83c98dca9b821e398af {"aliquot_tag": "ALQ_339efeb3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01955.RNA-Seq.transcriptome.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.transcriptome.gdc_realn.bam 10437159748 BAM transcriptome harmonized CPTAC3 23238661-c52b-4498-8af6-97c073cfa000 079834374717d6a59b179dc4083ae35d {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01955.RNA-Seq.transcriptome.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.transcriptome.gdc_realn.bam 8441188424 BAM transcriptome harmonized CPTAC3 088076ea-9de3-4458-9e98-940f0c38bde7 9249d29464c24df62de81e307b6d9dd2 {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor"} -C3L-01955.WGS.N C3L-01955 CCRCC WGS blood_normal CPT0389840002 CPT0389840002.WholeGenome.RP-2158.bam 28916531149 BAM aligned CPTAC3 e624d77b-e026-44ce-8b5b-d8358b47f666 cd56cb98a860eff28ddf503d9aa0f981 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01955.WGS.N.hg38 C3L-01955 CCRCC WGS blood_normal CPT0389840002 09ce9065-3d14-4688-8f2e-578363c79726_wgs_gdc_realn.bam 87155275545 BAM harmonized CPTAC3 cd1599ab-6829-4e95-aee2-e90f1ac79260 a0844ae9ac64db75dc59d027b8b54312 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01955.WGS.T C3L-01955 CCRCC WGS tumor CPT0389780006 CPT0389780006.WholeGenome.RP-2158.bam 25254646585 BAM aligned CPTAC3 c6d71be3-07fd-480d-8d4e-f22986c94e73 9e35de08f0e3ab948a78b24da19c1105 {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor"} -C3L-01955.WGS.T.hg38 C3L-01955 CCRCC WGS tumor CPT0389780006 b3334be3-cf54-432a-9d4e-e9623216be67_wgs_gdc_realn.bam 79640211812 BAM harmonized CPTAC3 8236977f-2539-4521-9af2-5440e358e7aa 346246aaaec4f84c9bdb895b4fb67cbb {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor"} -C3L-01955.WXS.N C3L-01955 CCRCC WXS blood_normal CPT0389840002 CPT0389840002.WholeExome.RP-1303.bam 24480024582 BAM aligned CPTAC3 1686df8d-6217-4b19-a388-23a3463095e5 0af5e394fcd7829674407a4fa931e7b9 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01955.WXS.N.hg38 C3L-01955 CCRCC WXS blood_normal CPT0389840002 09ce9065-3d14-4688-8f2e-578363c79726_wxs_gdc_realn.bam 34025730562 BAM harmonized CPTAC3 45b12b7e-770c-4851-a2a0-1d16f8370938 4a8b651b7973cac5c3681d866845ef08 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal"} -C3L-01955.WXS.T C3L-01955 CCRCC WXS tumor CPT0389780006 CPT0389780006.WholeExome.RP-1303.bam 21008085563 BAM aligned CPTAC3 31c6acfb-03d2-4006-bc63-2b72543a5278 6de7d0a0114ba0d5ba869d5ae07a54f8 {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor"} -C3L-01955.WXS.T.hg38 C3L-01955 CCRCC WXS tumor CPT0389780006 b3334be3-cf54-432a-9d4e-e9623216be67_wxs_gdc_realn.bam 28932542789 BAM harmonized CPTAC3 b2f9dad3-a7ff-4e78-8da9-ba96e502227a 671d671874b3aa07790b1173d84b028a {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor"} -C3L-01958.MethArray.Green.T C3L-01958 CCRCC Methylation_Array tumor CPT0100370009 202234370093_R07C01_Grn.idat 13676232 IDAT Green NA CPTAC3 7d551149-867c-41c1-b93f-38671df0d1da 6bff14c1632f474cb9ee390daa67f420 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor"} -C3L-01958.MethArray.Red.T C3L-01958 CCRCC Methylation_Array tumor CPT0100370009 202234370093_R07C01_Red.idat 13676232 IDAT Red NA CPTAC3 60d6724c-7605-4f36-90a8-418fb04a1ec2 dbbf5f053db8da308fd108749de11387 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor"} -C3L-01958.miRNA-Seq.S15_L006_R1.T C3L-01958 CCRCC miRNA-Seq tumor CPT0100370006 180828_UNC32-K00270_0112_AHWTLNBBXX_GAGTGG_S15_L006_R1_001.unaln.bam 218019570 BAM S15_L006_R1 unaligned CPTAC3 b9f0fa0c-4d9e-4816-9d7b-b85a057c7f55 3ad0811576c2d2a180d629b704158a59 {"aliquot_tag": "ALQ_d26b4005", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01958.miRNA-Seq.T.hg38 C3L-01958 CCRCC miRNA-Seq tumor CPT0100370006 1ed7261a-2b75-446e-8776-7341d971b3ab_mirnaseq_gdc_realn.bam 243518404 BAM harmonized CPTAC3 3521c557-f4d6-4054-b2bf-1563ca358b3e dd18df604c1a086fb075eedf21314ca8 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor"} -C3L-01958.RNA-Seq.chimeric.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.chimeric.gdc_realn.bam 44269243 BAM chimeric harmonized CPTAC3 e769880c-f5b7-409a-9f3d-8838e49dd9b0 02c7f7167c3e03d5d3f3b8e60505be93 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor"} -C3L-01958.RNA-Seq.genomic.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.genomic.gdc_realn.bam 10278615093 BAM genomic harmonized CPTAC3 f45c852c-757c-4a82-aef0-9e926aeea512 7381d45f22778871d7be911990b3d038 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor"} -C3L-01958.RNA-Seq.S16_L005_R1.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R1_001.fastq.gz 4642650499 FASTQ S16_L005_R1 unaligned CPTAC3 a39f2ceb-b3dd-4206-8ab9-2a5137d085ab 03e619253d7e149384f8300ad37dcfbf {"aliquot_tag": "ALQ_d26b4005", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01958.RNA-Seq.S16_L005_R2.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R2_001.fastq.gz 5063056216 FASTQ S16_L005_R2 unaligned CPTAC3 01c44fbd-7f32-429d-8a5e-2c67c5a759ed b0a20dddec5cbec498a0e831617fe24a {"aliquot_tag": "ALQ_d26b4005", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01958.RNA-Seq.transcriptome.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.transcriptome.gdc_realn.bam 11841049764 BAM transcriptome harmonized CPTAC3 b70b95f5-cac9-487f-a45e-2ca67725ba31 e1995c82e8b3960399be90482da6d1f0 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor"} -C3L-01958.WGS.N C3L-01958 CCRCC WGS blood_normal CPT0101910002 CPT0101910002.WholeGenome.RP-1303.bam 67325535791 BAM aligned CPTAC3 b3f2013f-8f4c-48e9-84d6-751ded37f432 b87cdfe83dd28979e813e69b22838222 {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01958.WGS.N.hg38 C3L-01958 CCRCC WGS blood_normal CPT0101910002 168bdd2c-ded5-4d4c-a41d-77745479c8f2_wgs_gdc_realn.bam 99482728827 BAM harmonized CPTAC3 47012a9e-ed95-4b84-af10-a0a005f17350 0156e1c544a6c398418e028ebeea5e7a {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01958.WGS.T C3L-01958 CCRCC WGS tumor CPT0100370009 CPT0100370009.WholeGenome.RP-1303.bam 65920073001 BAM aligned CPTAC3 ab704686-2c71-48ad-a981-4ddf4208e415 9915b7aebf33ba6b99ace60accd9820e {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor"} -C3L-01958.WGS.T.hg38 C3L-01958 CCRCC WGS tumor CPT0100370009 0d7c2c0c-688e-4521-8b39-9836aeb1acda_wgs_gdc_realn.bam 96488007264 BAM harmonized CPTAC3 806ffb37-8559-49c0-81ac-b558d53465d3 a6765bdea02e942284262251b8213b05 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor"} -C3L-01958.WXS.N C3L-01958 CCRCC WXS blood_normal CPT0101910002 CPT0101910002.WholeExome.RP-1303.bam 34078045552 BAM aligned CPTAC3 7f07c74a-1854-4f3a-8309-6ffe040dfc20 3245ff68cd743dfb97e335b7b391ca6b {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01958.WXS.N.hg38 C3L-01958 CCRCC WXS blood_normal CPT0101910002 168bdd2c-ded5-4d4c-a41d-77745479c8f2_wxs_gdc_realn.bam 46404902534 BAM harmonized CPTAC3 858619a9-99b8-4821-86eb-1bdb1aabd5c3 23cccdb824117d8f055a0d188cc340f4 {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal"} -C3L-01958.WXS.T C3L-01958 CCRCC WXS tumor CPT0100370009 CPT0100370009.WholeExome.RP-1303.bam 61703658210 BAM aligned CPTAC3 fb56d799-032f-48dc-8872-b19af156a8e2 e173b0ef7af68ed099c1ea0d8b428827 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor"} -C3L-01958.WXS.T.hg38 C3L-01958 CCRCC WXS tumor CPT0100370009 0d7c2c0c-688e-4521-8b39-9836aeb1acda_wxs_gdc_realn.bam 83944813030 BAM harmonized CPTAC3 123fa4fd-83ea-40c5-833b-55d85631ff63 4c8657ffae716325d3a2235d7a907b50 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor"} -C3L-01960.MethArray.Green.T C3L-01960 CCRCC Methylation_Array tumor CPT0389730006 205589730117_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 52b91dca-f739-4871-9913-ddeaafb58cf7 5243f9a3ff4ca14852a0bacff22da691 {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor"} -C3L-01960.MethArray.Red.T C3L-01960 CCRCC Methylation_Array tumor CPT0389730006 205589730117_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 34293d5d-63b7-466a-99d2-1713bbbb573e 96e7696f450e2a3b752ba5e01a12d011 {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor"} -C3L-01960.miRNA-Seq.S20_L002_R1.T C3L-01960 CCRCC miRNA-Seq tumor CPT0389730009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACCGG_S20_L002_R1_001.unaln.bam 297332196 BAM S20_L002_R1 unaligned CPTAC3 572a453b-e4e4-4f46-a525-69d45bdfbb3e 308665336798af82a5143ea3d6ecfa70 {"aliquot_tag": "ALQ_444ecfa2", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01960.miRNA-Seq.T.hg38 C3L-01960 CCRCC miRNA-Seq tumor CPT0389730009 bd1efb40-71b7-49ca-b594-846aa4daa916_mirnaseq_gdc_realn.bam 319601340 BAM harmonized CPTAC3 a65302eb-446d-4efe-b8bf-cb204e702cb2 654add8c90bd7aa9a474cf1abb1dd512 {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01960.RNA-Seq.chimeric.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.chimeric.gdc_realn.bam 266584673 BAM chimeric harmonized CPTAC3 710aebc6-13cd-4075-8032-b7d90984df90 a07d2f99f511e0f788c30d92b67e5a7d {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01960.RNA-Seq.genomic.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.genomic.gdc_realn.bam 7047435524 BAM genomic harmonized CPTAC3 8143f24d-a1b4-419b-9df8-5454e99aa5b4 0f316888a729a585069ce65c7a412fc7 {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01960.RNA-Seq.S8_L002_R1.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3417662865 FASTQ S8_L002_R1 unaligned CPTAC3 6f89d1ac-ee31-4f03-b888-45a45b31ab8e 2fe5bb20496332613357847114d31302 {"aliquot_tag": "ALQ_444ecfa2", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01960.RNA-Seq.S8_L002_R2.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3747889595 FASTQ S8_L002_R2 unaligned CPTAC3 35f43882-1777-4ac0-b321-b12a62270471 53568e85f6482057a62103bb94371aa4 {"aliquot_tag": "ALQ_444ecfa2", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01960.RNA-Seq.transcriptome.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.transcriptome.gdc_realn.bam 9358008687 BAM transcriptome harmonized CPTAC3 b9088eab-80d1-4184-a9b5-f3daf0a7a975 4829121a6d9744f7fbb0349abd757f3c {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor"} -C3L-01960.WGS.N C3L-01960 CCRCC WGS blood_normal CPT0389760002 CPT0389760002.WholeGenome.RP-2158.bam 21502252470 BAM aligned CPTAC3 66a44ce2-a925-4e87-aedb-e3c8c80f7741 a029cbf43288aec12b5bb2bae12f5a49 {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01960.WGS.N.hg38 C3L-01960 CCRCC WGS blood_normal CPT0389760002 103e51f0-bea5-404a-a5f6-7857f9a4cb19_wgs_gdc_realn.bam 65846421329 BAM harmonized CPTAC3 20e975e7-309a-416a-995a-1d024372fad2 fa0db1d0ded9ddf4ef061804b8a33e97 {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01960.WGS.T C3L-01960 CCRCC WGS tumor CPT0389730006 CPT0389730006.WholeGenome.RP-2158.bam 24635084665 BAM aligned CPTAC3 b3407d1c-249b-4be7-80e0-491766c1e818 2006f45a0d2bd7f4c01662e9775a29bc {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor"} -C3L-01960.WGS.T.hg38 C3L-01960 CCRCC WGS tumor CPT0389730006 8b155356-2973-4d95-bd1e-cb3dd8e469eb_wgs_gdc_realn.bam 74728993999 BAM harmonized CPTAC3 c069fc11-5807-47e5-b6aa-6f7cd52d10a9 f2179ace052b56dc8d702727d33f8aaa {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor"} -C3L-01960.WXS.N C3L-01960 CCRCC WXS blood_normal CPT0389760002 CPT0389760002.WholeExome.RP-1303.bam 22696151198 BAM aligned CPTAC3 16e5320c-51fd-458d-bef3-7259c66a2913 f2e29cc11b7de0f94642de9cbb00690d {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01960.WXS.N.hg38 C3L-01960 CCRCC WXS blood_normal CPT0389760002 103e51f0-bea5-404a-a5f6-7857f9a4cb19_wxs_gdc_realn.bam 31452058983 BAM harmonized CPTAC3 513fcf84-cf8e-40fa-81d1-e091b9918d69 0f5fdb1974c5949b4382a35716a192c3 {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01960.WXS.T C3L-01960 CCRCC WXS tumor CPT0389730006 CPT0389730006.WholeExome.RP-1303.bam 19318347818 BAM aligned CPTAC3 0678c325-0f45-4168-9d77-ae3d7ecf45d0 a2a8784c9ae37c7801373f30d7498a1c {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor"} -C3L-01960.WXS.T.hg38 C3L-01960 CCRCC WXS tumor CPT0389730006 8b155356-2973-4d95-bd1e-cb3dd8e469eb_wxs_gdc_realn.bam 26941033475 BAM harmonized CPTAC3 0aa4f0f8-4d18-4448-8429-51c919f6527a 7dec001c7017dbb9e6cd339c9eee2826 {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor"} -C3L-01962.MethArray.Green.A C3L-01962 CCRCC Methylation_Array tissue_normal CPT0389660006 205549610123_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b4900224-6b64-47cf-9d26-907cc0b2d4fc d1febca0545af445410611e7fa3598b1 {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.MethArray.Green.T C3L-01962 CCRCC Methylation_Array tumor CPT0389650006 205589740002_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4a3c3d92-d81d-411b-93dc-05d70074f649 847eb01869886888b10576abc3af69ec {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor"} -C3L-01962.MethArray.Red.A C3L-01962 CCRCC Methylation_Array tissue_normal CPT0389660006 205549610123_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 aa20aa00-6145-41ab-a1ab-e9926ed0049d 2f50471f7cdda22ceadb7d067d8bbd7a {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.MethArray.Red.T C3L-01962 CCRCC Methylation_Array tumor CPT0389650006 205589740002_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 e3901159-70a9-40c1-93e7-5c611d25ae76 83282b9d4986dfce10d3d069d0bfcaea {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor"} -C3L-01962.miRNA-Seq.A.hg38 C3L-01962 CCRCC miRNA-Seq tissue_normal CPT0389660009 094296a8-a39f-4924-9396-166e3632e352_mirnaseq_gdc_realn.bam 361233849 BAM harmonized CPTAC3 6e7803a9-cd77-443b-845f-c20fa24a87af ea626fd378bc7f9f14b7658a5edd95d3 {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.miRNA-Seq.S7_L001_R1.T C3L-01962 CCRCC miRNA-Seq tumor CPT0389650009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAAAAG_S7_L001_R1_001.unaln.bam 355437813 BAM S7_L001_R1 unaligned CPTAC3 e26747ae-fbdd-40a6-b121-e61453deeb61 68e0641de1a317604e64fc78151237e9 {"aliquot_tag": "ALQ_52e9a7", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01962.miRNA-Seq.S8_L001_R1.A C3L-01962 CCRCC miRNA-Seq tissue_normal CPT0389660009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAACTA_S8_L001_R1_001.unaln.bam 339399776 BAM S8_L001_R1 unaligned CPTAC3 bcb30709-4e92-4be8-afd7-a7cf36132381 cd41b17d782174f6f5b85c61fce25bb8 {"aliquot_tag": "ALQ_47f29377", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.miRNA-Seq.T.hg38 C3L-01962 CCRCC miRNA-Seq tumor CPT0389650009 18b1b3a8-e009-419e-8d59-c657b80864a9_mirnaseq_gdc_realn.bam 387327722 BAM harmonized CPTAC3 0dceab24-1b8b-422d-a1f0-49cab95390b3 ef23e7f7c90a4e37b2f9c03c633278c8 {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor"} -C3L-01962.RNA-Seq.chimeric.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.chimeric.gdc_realn.bam 390703292 BAM chimeric harmonized CPTAC3 37337098-7634-4d67-842a-03145dfc6c4a 16924c393860bf87095bbe209c6642ff {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.RNA-Seq.chimeric.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.chimeric.gdc_realn.bam 376996206 BAM chimeric harmonized CPTAC3 6dd07296-f035-49ae-9dc6-caaa0dc1a08d 77b6669150dfcfaf2c41c408df959921 {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor"} -C3L-01962.RNA-Seq.genomic.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.genomic.gdc_realn.bam 8846093949 BAM genomic harmonized CPTAC3 ae2a2448-e7eb-40a9-9d96-41219190bb02 165a90cec317acfc7a484bb498f19ae9 {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.RNA-Seq.genomic.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.genomic.gdc_realn.bam 7859613123 BAM genomic harmonized CPTAC3 7076a2c3-3eb1-46a1-9bc8-d2d806b87a2b e1aeffca54084416917d8dba8139db3e {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor"} -C3L-01962.RNA-Seq.S12_L003_R1.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3725953474 FASTQ S12_L003_R1 unaligned CPTAC3 7851811d-d666-4e23-b58f-7f40da924e59 8eb7097d3bbabb8607751e9a5cf9d139 {"aliquot_tag": "ALQ_52e9a7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01962.RNA-Seq.S12_L003_R2.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4245517766 FASTQ S12_L003_R2 unaligned CPTAC3 9ea5fe71-b337-4238-ac51-a6cf1c2364a4 6359f1e857ff53cb206fd5b5c6e6ef4a {"aliquot_tag": "ALQ_52e9a7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01962.RNA-Seq.S6_L002_R1.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 4129963228 FASTQ S6_L002_R1 unaligned CPTAC3 90163ff4-00c6-4827-9052-5ab802f312b8 f1cd9f7ba08ddb088545e2dbbd957700 {"aliquot_tag": "ALQ_47f29377", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.RNA-Seq.S6_L002_R2.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 4563350768 FASTQ S6_L002_R2 unaligned CPTAC3 740424a0-f73a-4662-85df-6f97ee2a2a87 ffdb68d72fcfbf2a322627fe5fa347b0 {"aliquot_tag": "ALQ_47f29377", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.RNA-Seq.transcriptome.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.transcriptome.gdc_realn.bam 10121543876 BAM transcriptome harmonized CPTAC3 e648be29-d633-4dac-937c-97db0bd1e275 17b3e1d0d4fd7db60a6cce2f5207fdd9 {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.RNA-Seq.transcriptome.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.transcriptome.gdc_realn.bam 9858214132 BAM transcriptome harmonized CPTAC3 70ceab75-b58a-48b8-880d-d2bdef26405a cf77087bab2344bd141a3880bba74704 {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor"} -C3L-01962.WGS.N C3L-01962 CCRCC WGS blood_normal CPT0389710002 CPT0389710002.WholeGenome.RP-2158.bam 33702716635 BAM aligned CPTAC3 ae6f1ff3-5cc6-4f8e-9ce5-6c76761de7d6 2c86e5342f796eb045240a37c3cd42e4 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01962.WGS.N.hg38 C3L-01962 CCRCC WGS blood_normal CPT0389710002 f8213505-75c6-4165-8bd8-72b44f0d5f35_wgs_gdc_realn.bam 103228384049 BAM harmonized CPTAC3 962d01a8-afc6-4290-b289-004e4b84fdde 7e7149496fa014cb9bf002ee7b784061 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01962.WGS.T C3L-01962 CCRCC WGS tumor CPT0389650006 CPT0389650006.WholeGenome.RP-2158.bam 23513442958 BAM aligned CPTAC3 e781ef67-f7bf-44ee-8cac-3f0299c18830 fb7322b786f83508993209908c2b1d42 {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor"} -C3L-01962.WGS.T.hg38 C3L-01962 CCRCC WGS tumor CPT0389650006 9d82817b-c087-4cac-8474-b25b40e6fb5d_wgs_gdc_realn.bam 69314644404 BAM harmonized CPTAC3 459e2d6f-4d70-46cf-9dfc-5ede02e1e1da 27183dc1f35143c7f2bb30ac82aaaec0 {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor"} -C3L-01962.WXS.A C3L-01962 CCRCC WXS tissue_normal CPT0389660006 CPT0389660006.WholeExome.RP-1303.bam 22364873936 BAM aligned CPTAC3 25e0f4fb-e4ae-42ea-ac92-c713d2c7b800 40f394e6d1c6c347240b9a817c1bbf50 {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.WXS.A.hg38 C3L-01962 CCRCC WXS tissue_normal CPT0389660006 2f69adeb-8c46-4c39-90bc-28494f9ab598_wxs_gdc_realn.bam 31210482407 BAM harmonized CPTAC3 51d89d20-cc4c-429f-a469-6d553bdc29ca 25811e2897e57d225f3ba7d2ae5bddaa {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01962.WXS.N C3L-01962 CCRCC WXS blood_normal CPT0389710002 CPT0389710002.WholeExome.RP-1303.bam 25313791905 BAM aligned CPTAC3 91eda32e-6d9f-4cd2-8a0e-979fedf553f9 ea12edfce5d28edcffb52dc88ad0f103 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01962.WXS.N.hg38 C3L-01962 CCRCC WXS blood_normal CPT0389710002 f8213505-75c6-4165-8bd8-72b44f0d5f35_wxs_gdc_realn.bam 34885708851 BAM harmonized CPTAC3 1b608b94-5ab6-4e4b-b49c-db61e74b9fa3 dacfcffd058116297360f89c0325b8b9 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01962.WXS.T C3L-01962 CCRCC WXS tumor CPT0389650006 CPT0389650006.WholeExome.RP-1303.bam 24253324908 BAM aligned CPTAC3 ab112e18-7371-4a6f-9c7a-fcfef238430e 8cc9defe97a14be169db1ed94f7e0aa7 {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor"} -C3L-01962.WXS.T.hg38 C3L-01962 CCRCC WXS tumor CPT0389650006 9d82817b-c087-4cac-8474-b25b40e6fb5d_wxs_gdc_realn.bam 33826704965 BAM harmonized CPTAC3 0d9b48e5-13a7-4640-958a-493acc3b51f8 2bfcb74f168f60db9d634a750f2f74de {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor"} -C3L-01963.MethArray.Green.T C3L-01963 CCRCC Methylation_Array tumor CPT0100320009 202234380061_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2418bf10-125a-4119-b9d7-9198aae769a0 c5adf80188fb165662f06c121439daae {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor"} -C3L-01963.MethArray.Red.T C3L-01963 CCRCC Methylation_Array tumor CPT0100320009 202234380061_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 0beb978e-7125-44c1-8b67-0fa402a4e474 d1984f5e405774c1ccf19270afc22fde {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor"} -C3L-01963.miRNA-Seq.S24_L006_R1.T C3L-01963 CCRCC miRNA-Seq tumor CPT0100320006 180828_UNC32-K00270_0112_AHWTLNBBXX_GGTAGC_S24_L006_R1_001.unaln.bam 217559799 BAM S24_L006_R1 unaligned CPTAC3 6f318922-92a6-4561-8ded-a0b69fb67306 47905586566cb927804a02b56785874e {"aliquot_tag": "ALQ_1a8bcf75", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01963.miRNA-Seq.T.hg38 C3L-01963 CCRCC miRNA-Seq tumor CPT0100320006 65f7612f-047e-483c-a42a-f4c9c7a36c69_mirnaseq_gdc_realn.bam 248090391 BAM harmonized CPTAC3 446dfafa-e69f-4181-b8b4-0be48ae9e441 24c0900dd0f564fb0203936dc9ca4a01 {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor"} -C3L-01963.RNA-Seq.chimeric.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.chimeric.gdc_realn.bam 57726143 BAM chimeric harmonized CPTAC3 4042b991-f328-41d9-9ddb-88644dd415ba db80f05085e122624c2adbfab42e5069 {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor"} -C3L-01963.RNA-Seq.genomic.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.genomic.gdc_realn.bam 8942399393 BAM genomic harmonized CPTAC3 fee8019a-c930-4717-8300-a9d6ccbfd767 b27904a7b8fb9844efaf500b787d8643 {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor"} -C3L-01963.RNA-Seq.S19_L005_R1.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R1_001.fastq.gz 4172171312 FASTQ S19_L005_R1 unaligned CPTAC3 8505c1ca-c192-4185-9488-e05ca000bb7c 78cf2904dbfd4d0a7d06f58a890df66a {"aliquot_tag": "ALQ_1a8bcf75", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01963.RNA-Seq.S19_L005_R2.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R2_001.fastq.gz 4569844205 FASTQ S19_L005_R2 unaligned CPTAC3 e7918878-b95e-4723-bbae-29e7cb71f8d5 2cab707b1e13ba60a1471970cabbd879 {"aliquot_tag": "ALQ_1a8bcf75", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01963.RNA-Seq.transcriptome.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.transcriptome.gdc_realn.bam 10113415072 BAM transcriptome harmonized CPTAC3 137c4d86-3e0f-4204-961d-cce26c7be5a0 522b8f91098df19a0fb82fbc97363f2f {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor"} -C3L-01963.WGS.N C3L-01963 CCRCC WGS blood_normal CPT0101890002 CPT0101890002.WholeGenome.RP-1303.bam 57256663390 BAM aligned CPTAC3 97240d1b-b129-4537-9dd8-58a254581fba 5fa188314d68f500231bfad2e5c85c99 {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01963.WGS.N.hg38 C3L-01963 CCRCC WGS blood_normal CPT0101890002 e2755a99-ff45-4a2c-9d57-0a01d0e2e979_wgs_gdc_realn.bam 83056219291 BAM harmonized CPTAC3 92d8e354-101d-45fe-9bf8-6c6a0488de8d 2caf4682739754b0def022340f043b8f {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01963.WGS.T C3L-01963 CCRCC WGS tumor CPT0100320009 CPT0100320009.WholeGenome.RP-1303.bam 64104547237 BAM aligned CPTAC3 95ea6301-37a6-4a87-9347-3c8891c6dc4e 44fe72ef37ec5e291cd19c8d4f607cbd {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor"} -C3L-01963.WGS.T.hg38 C3L-01963 CCRCC WGS tumor CPT0100320009 4855d4ef-58e9-4bf3-87e1-e0b8abf8bc3e_wgs_gdc_realn.bam 93414197377 BAM harmonized CPTAC3 e05ebd44-d635-464b-b1c6-3d462f1a7ca6 27c2603091ff3a52892c75b8ebad9885 {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor"} -C3L-01963.WXS.N C3L-01963 CCRCC WXS blood_normal CPT0101890002 CPT0101890002.WholeExome.RP-1303.bam 48258674957 BAM aligned CPTAC3 91f8f1eb-bdc1-4523-accb-f7ef76cac38d 6ef928692846dcc62775d97821812e17 {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01963.WXS.N.hg38 C3L-01963 CCRCC WXS blood_normal CPT0101890002 e2755a99-ff45-4a2c-9d57-0a01d0e2e979_wxs_gdc_realn.bam 66630719157 BAM harmonized CPTAC3 d677dba6-e623-4daa-8694-32e9892c1f49 7de3cc3d67abfd302cf55f811ed36e87 {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal"} -C3L-01963.WXS.T C3L-01963 CCRCC WXS tumor CPT0100320009 CPT0100320009.WholeExome.RP-1303.bam 34620699107 BAM aligned CPTAC3 9070cb92-719d-4b54-8403-0b1381053022 fcbcdbe4846a24842d1b903b4a5ea8fa {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor"} -C3L-01963.WXS.T.hg38 C3L-01963 CCRCC WXS tumor CPT0100320009 4855d4ef-58e9-4bf3-87e1-e0b8abf8bc3e_wxs_gdc_realn.bam 47921463207 BAM harmonized CPTAC3 1704d3d8-2fcb-4348-92fd-e272ef888df1 be9ca08ca007246fa87290da8340d9e3 {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor"} -C3L-01967.MethArray.Green.T C3L-01967 UCEC Methylation_Array tumor CPT0108750009 202234370091_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a0d8eb4d-19d2-40ae-a979-972449bfefea d8907de22059e7e41a5c0e296db30c42 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor"} -C3L-01967.MethArray.Red.T C3L-01967 UCEC Methylation_Array tumor CPT0108750009 202234370091_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 a315cd32-c387-49a0-b01c-6a8033e4e616 db7ddd18ae3c1bc8295f9e3e5b91048f {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor"} -C3L-01967.miRNA-Seq.A.hg38 C3L-01967 UCEC miRNA-Seq tissue_normal CPT0108790006 c0d6a909-d5e6-4b49-9101-dcc3724f02bd_mirnaseq_gdc_realn.bam 336455431 BAM harmonized CPTAC3 6d6b1402-a5ed-4cf9-bb2a-a10ca58f0ef1 3a9bfb554d1f614f02161546ac604c70 {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.miRNA-Seq.S39_L003_R1.T C3L-01967 UCEC miRNA-Seq tumor CPT0108750006 181119_UNC31-K00269_0165_AH27WCBBXY_ATGTCA_S39_L003_R1_001.unaln.bam 260907202 BAM S39_L003_R1 unaligned CPTAC3 bf363d7f-59bb-4f9e-b78f-16c21d8233ea 97db5b09267a887cbde9555ace65b487 {"aliquot_tag": "ALQ_d51f14", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01967.miRNA-Seq.S9_L001_R1.A C3L-01967 UCEC miRNA-Seq tissue_normal CPT0108790006 181119_UNC31-K00269_0165_AH27WCBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 290260691 BAM S9_L001_R1 unaligned CPTAC3 0862c880-6543-4e18-815c-0cc43727236a 2862bc41cb7be59d4448dc0c1d473f81 {"aliquot_tag": "ALQ_c525f215", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.miRNA-Seq.T.hg38 C3L-01967 UCEC miRNA-Seq tumor CPT0108750006 e29719d5-95c7-4146-a893-993d51692d1e_mirnaseq_gdc_realn.bam 289379267 BAM harmonized CPTAC3 9c272b1a-54bb-47b9-88a2-5cc2993862be 182669cc9bab2a30fef2df8d646ed118 {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.chimeric.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.chimeric.gdc_realn.bam 67348615 BAM chimeric harmonized CPTAC3 0adffc77-c782-4c8b-a330-e0821a70af08 6982a7156aae5142218188fbaa5344ff {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.RNA-Seq.chimeric.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.chimeric.gdc_realn.bam 68459647 BAM chimeric harmonized CPTAC3 67f98baf-efb3-4417-8ec1-33440a845386 69717a7437cd1b5da337237cf1654fff {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.chimeric.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.chimeric.gdc_realn.bam 121443503 BAM chimeric harmonized CPTAC3 4c34f079-a05f-4749-8b35-cfbb673ba83d 3e31d5178d545a6c4bde26ab8b3ec299 {"aliquot_tag": "ALQ_9a679ea2", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.genomic.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.genomic.gdc_realn.bam 8922883280 BAM genomic harmonized CPTAC3 95d741d5-838c-4037-8e9a-f75d09a3ecc7 0bd6eafcef8221a235d14ec647c6e432 {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.RNA-Seq.genomic.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.genomic.gdc_realn.bam 9859230876 BAM genomic harmonized CPTAC3 211ba8b7-93de-40ce-b67b-902f65f8febe 20e50f3f5c59a11f31851982de214ca9 {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.genomic.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.genomic.gdc_realn.bam 5850682957 BAM genomic harmonized CPTAC3 4d82d3cb-dfdb-4b2e-86d4-8adfba8808ec 7d43eca6bed6bf05196c4be38baa1330 {"aliquot_tag": "ALQ_9a679ea2", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.S21_L006_R1.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 4413815726 FASTQ S21_L006_R1 unaligned CPTAC3 d7ed9bb4-a7f6-4516-86ec-e6cf1fa395ad 3bedda0c94387ac59b87029e11af9cd7 {"aliquot_tag": "ALQ_d51f14", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.S21_L006_R2.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 4970728519 FASTQ S21_L006_R2 unaligned CPTAC3 22a3da5a-689e-494d-be36-0f9c0b42a263 1eee68799d2ce9ac647999f406126619 {"aliquot_tag": "ALQ_d51f14", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.S8_R1.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R1_001.fastq.gz 3757601817 FASTQ S8_R1 unaligned CPTAC3 46da3bde-ee2c-4a41-98e3-098cd192dd03 c57a776a3a335312cd2b4060a13a18db {"aliquot_tag": "ALQ_9a679ea2", "sample": "S8", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.S8_R2.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R2_001.fastq.gz 3840259151 FASTQ S8_R2 unaligned CPTAC3 95c0b8d9-5c4c-40db-8544-7eeeb9fbedfc b99164984591f066588cacdc0bc97c9f {"aliquot_tag": "ALQ_9a679ea2", "sample": "S8", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.S9_L003_R1.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R1_001.fastq.gz 4097490512 FASTQ S9_L003_R1 unaligned CPTAC3 74d46258-f21a-4f4e-b04e-96340efb60e3 50aacef8aeb92136a900926e8caa2e98 {"aliquot_tag": "ALQ_c525f215", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.RNA-Seq.S9_L003_R2.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R2_001.fastq.gz 4491544632 FASTQ S9_L003_R2 unaligned CPTAC3 fccdf1bc-36b2-4923-b46d-591968fc7c8b 477dfefb4072f2f5cb4769b9fc3dd40c {"aliquot_tag": "ALQ_c525f215", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.RNA-Seq.transcriptome.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.transcriptome.gdc_realn.bam 11233841877 BAM transcriptome harmonized CPTAC3 53d12e64-ae56-453c-9870-068a8a479843 a7ec409a09facc00d52752b81d2dba05 {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.RNA-Seq.transcriptome.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.transcriptome.gdc_realn.bam 12454204394 BAM transcriptome harmonized CPTAC3 33c9cf08-fe8d-42f0-ad0e-2decc737046f 2d793e099b305ee54037523443f00c59 {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor"} -C3L-01967.RNA-Seq.transcriptome.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.transcriptome.gdc_realn.bam 3333635265 BAM transcriptome harmonized CPTAC3 2c8b0ce8-f193-4e67-a517-a5b180df6428 708d3235efe40456576da2e91bf35f3f {"aliquot_tag": "ALQ_9a679ea2", "gdc_sample_type": "Primary Tumor"} -C3L-01967.WGS.A C3L-01967 UCEC WGS tissue_normal CPT0108790009 CPT0108790009.WholeGenome.RP-1303.bam 60116612201 BAM aligned CPTAC3 959f0294-1ba2-476c-991c-07f1bbf75e05 55b80d12183c2fe5429b0456f29583e2 {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.WGS.A.hg38 C3L-01967 UCEC WGS tissue_normal CPT0108790009 e783f1a5-04c3-4885-9700-d31847165b48_wgs_gdc_realn.bam 87786339082 BAM harmonized CPTAC3 55fdfd29-dcdd-4f5e-872f-ed3b2fc4391e c97723b49f64e5ac2c56fd1f57f78981 {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.WGS.N C3L-01967 UCEC WGS blood_normal CPT0108350002 CPT0108350002.WholeGenome.RP-1303.bam 73651233491 BAM aligned CPTAC3 61b10ca7-d61d-4ae0-83c2-c6971a632aea 607f0857465ed92eab97e034940ba694 {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01967.WGS.N.hg38 C3L-01967 UCEC WGS blood_normal CPT0108350002 04b3ef7b-97cf-41be-9f9a-e48bed492011_wgs_gdc_realn.bam 108368952406 BAM harmonized CPTAC3 f92832c1-0ead-4605-9a5f-eee3cc519642 3aedeca4fffaf05e1f790eec896d1f7b {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01967.WGS.T C3L-01967 UCEC WGS tumor CPT0108750009 CPT0108750009.WholeGenome.RP-1303.bam 61617277944 BAM aligned CPTAC3 5e6d7a8b-7356-4698-9342-79dc14ea2488 8179ba29caf68eb36557df17d352f834 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor"} -C3L-01967.WGS.T.hg38 C3L-01967 UCEC WGS tumor CPT0108750009 86b015e8-a868-4af3-af5c-4e389fb1b08d_wgs_gdc_realn.bam 90892462734 BAM harmonized CPTAC3 4dc40709-0504-4ef3-ba5c-e7a2394d801e 7663a68a3d3ef616a75d7c89c532f42a {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor"} -C3L-01967.WXS.A C3L-01967 UCEC WXS tissue_normal CPT0108790009 CPT0108790009.WholeExome.RP-1303.bam 35528371729 BAM aligned CPTAC3 15d286ff-6a8d-4bf2-bd84-4cd6649fdac2 9c7b55cbdf10ad339365bb8e9f4ed79c {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.WXS.A.hg38 C3L-01967 UCEC WXS tissue_normal CPT0108790009 e783f1a5-04c3-4885-9700-d31847165b48_wxs_gdc_realn.bam 47364862076 BAM harmonized CPTAC3 6b7ea7b3-8533-406a-956b-0bd46448a581 526caf7738fd715465f45a880666ae58 {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01967.WXS.N C3L-01967 UCEC WXS blood_normal CPT0108350002 CPT0108350002.WholeExome.RP-1303.bam 31983276564 BAM aligned CPTAC3 2712a15a-edcf-4559-81a7-47ee0d7c0173 7750798458329972bdc668e7a5a65b05 {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01967.WXS.N.hg38 C3L-01967 UCEC WXS blood_normal CPT0108350002 04b3ef7b-97cf-41be-9f9a-e48bed492011_wxs_gdc_realn.bam 42766142501 BAM harmonized CPTAC3 7aeeee65-9ff9-4013-9fda-10c47bdd7c02 9a8ca98dfbcefba699a34c54d05492af {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01967.WXS.T C3L-01967 UCEC WXS tumor CPT0108750009 CPT0108750009.WholeExome.RP-1303.bam 37557669150 BAM aligned CPTAC3 37f8410d-ca55-4bb3-b2d1-90e78b8f4b38 6a075086e70f72b07056a9b8bd6f03f9 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor"} -C3L-01967.WXS.T.hg38 C3L-01967 UCEC WXS tumor CPT0108750009 86b015e8-a868-4af3-af5c-4e389fb1b08d_wxs_gdc_realn.bam 51372016726 BAM harmonized CPTAC3 d1da335f-7177-42d6-8417-1a67ce3d6f45 f81b5f13ee9b1b9d679b4edf2d060356 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor"} -C3L-01971.MethArray.Green.T C3L-01971 PDA Methylation_Array tumor CPT0108930009 202234380061_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9d294240-9007-4d6b-9627-730d952ca936 35ce2d0c7598d5a7cfc869dcb0621923 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor"} -C3L-01971.MethArray.Red.T C3L-01971 PDA Methylation_Array tumor CPT0108930009 202234380061_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 2c972e44-074c-45ce-ab4a-398d46f5d0b8 57cdb555c4ff1f83f3c9a2e0a0b590e4 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor"} -C3L-01971.miRNA-Seq.S40_L003_R1.T C3L-01971 PDA miRNA-Seq tumor CPT0108930006 181119_UNC31-K00269_0165_AH27WCBBXY_CCGTCC_S40_L003_R1_001.unaln.bam 247259075 BAM S40_L003_R1 unaligned CPTAC3 8662e5d7-4605-42bf-8640-e6ff9b241480 8064ac373aecf8b4296c0062af7ff63e {"aliquot_tag": "ALQ_b59f8bc4", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01971.miRNA-Seq.T.hg38 C3L-01971 PDA miRNA-Seq tumor CPT0108930006 6196237e-70c1-4ac0-9ff4-b38520c8a854_mirnaseq_gdc_realn.bam 268553445 BAM harmonized CPTAC3 5469e56a-4901-444d-a077-ea11a415faaf 95c3e5d15a7ea75f1f6a58366d4d668e {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor"} -C3L-01971.RNA-Seq.chimeric.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.chimeric.gdc_realn.bam 68651865 BAM chimeric harmonized CPTAC3 4ecf2ce1-d070-4961-bfef-f3ce3d3362ce 77b13fdf0b8d5c2807447e9f949aad3f {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor"} -C3L-01971.RNA-Seq.genomic.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.genomic.gdc_realn.bam 8684543702 BAM genomic harmonized CPTAC3 9b4a6db6-7979-4107-9899-591d1e052b8d ec2207d90db2e682f772a5ad2dff2648 {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor"} -C3L-01971.RNA-Seq.S20_L006_R1.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3546049460 FASTQ S20_L006_R1 unaligned CPTAC3 99349916-a315-4682-9e02-d9afda5b73b3 d736e1109f9314b9d9247e4e58479111 {"aliquot_tag": "ALQ_b59f8bc4", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01971.RNA-Seq.S20_L006_R2.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3998905656 FASTQ S20_L006_R2 unaligned CPTAC3 04d12709-918a-43df-82c7-07bf8c3e52f3 f9b3351b7f725009e1818ec80504ec12 {"aliquot_tag": "ALQ_b59f8bc4", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01971.RNA-Seq.transcriptome.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.transcriptome.gdc_realn.bam 9766378217 BAM transcriptome harmonized CPTAC3 86a8d0ee-9d1b-4bfe-af3d-8bdfc11ecd6c 5a2476da11fc0dbfbccb72d4e358bfe8 {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor"} -C3L-01971.Targeted.T C3L-01971 PDA Targeted_Sequencing tumor CPT0108930009_1 CPT0108930009_1.CustomSelection.RP-1303.PDO-18786.bam 4484410057 BAM aligned CPTAC3 269718aa-9795-4b90-ac93-7de66d298740 174d3fd87b63369719364c8c4dd6aba3 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor"} -C3L-01971.Targeted.T.hg38 C3L-01971 PDA Targeted_Sequencing tumor CPT0108930009_1 9a04e944-5951-497c-ba61-38fb9e5ca2a3_targetedsequencing_gdc_realn.bam 6286950402 BAM harmonized CPTAC3 eeec3718-62ab-4369-bf1e-40d82a03eb7b 18df9d3550f5f6ab583ba731a51bb835 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor"} -C3L-01971.WGS.N C3L-01971 PDA WGS blood_normal CPT0108360002 CPT0108360002.WholeGenome.RP-1303.bam 60795890745 BAM aligned CPTAC3 fab6874f-a7d7-4416-9d2c-5d4eb3c8eaf5 c4f7552c9598b73e111e51b90a7e2108 {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01971.WGS.N.hg38 C3L-01971 PDA WGS blood_normal CPT0108360002 ad281038-bcbb-4201-9846-b392a6494955_wgs_gdc_realn.bam 90181199558 BAM harmonized CPTAC3 79937411-d12e-47a2-86d7-ce399dc0d66a 1c716c25df85228be955c15b60b30776 {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01971.WGS.T C3L-01971 PDA WGS tumor CPT0108930009 CPT0108930009.WholeGenome.RP-1303.bam 60100816919 BAM aligned CPTAC3 916b7040-9bc3-457f-8536-c0e958a13dc0 7ced3992bb8f153b3e866b1f0a8f5595 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor"} -C3L-01971.WGS.T.hg38 C3L-01971 PDA WGS tumor CPT0108930009 bc19da78-4f82-4968-b4cc-826951d40d98_wgs_gdc_realn.bam 89530185663 BAM harmonized CPTAC3 b07bfa8f-80a1-4da0-8725-d23f86842dba 167cb293388bc8dab15026b9b63c9641 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor"} -C3L-01971.WXS.N C3L-01971 PDA WXS blood_normal CPT0108360002 CPT0108360002.WholeExome.RP-1303.bam 27890058638 BAM aligned CPTAC3 de5645fb-43fb-48a4-a761-0d4c8885f8ea 80e34b3ffd273e7484ac47a7e6675eaf {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01971.WXS.N.hg38 C3L-01971 PDA WXS blood_normal CPT0108360002 ad281038-bcbb-4201-9846-b392a6494955_wxs_gdc_realn.bam 37906135513 BAM harmonized CPTAC3 5afb9d9c-6484-4b80-b6c7-c4d1a6ba1521 7e813e801ee8cfe29a8ee244001afc11 {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-01971.WXS.T C3L-01971 PDA WXS tumor CPT0108930009_1 CPT0108930009_1.WholeExome.RP-1303.bam 61961316294 BAM aligned CPTAC3 840525a9-c7d6-4055-acf2-192737318c58 0bf7729754fef695449863bd806e3e01 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor"} -C3L-01971.WXS.T C3L-01971 PDA WXS tumor CPT0108930009 CPT0108930009.WholeExome.RP-1303.bam 36411365774 BAM aligned CPTAC3 064a0511-89ba-423f-95c8-f48d27de81d3 9453ad7a61c369304481cdb3a69d9359 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor"} -C3L-01971.WXS.T.hg38 C3L-01971 PDA WXS tumor CPT0108930009_1 9a04e944-5951-497c-ba61-38fb9e5ca2a3_wxs_gdc_realn.bam 84116389220 BAM harmonized CPTAC3 4b877c78-cb6e-45b3-acf9-c5eb6ea1d9e6 0a7b6cbf876aef95eecf770aebd7eaf8 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor"} -C3L-01971.WXS.T.hg38 C3L-01971 PDA WXS tumor CPT0108930009 bc19da78-4f82-4968-b4cc-826951d40d98_wxs_gdc_realn.bam 49265841421 BAM harmonized CPTAC3 fafd38cf-c1b0-446e-ac0b-4ba3d97983f5 bfd01e416e8d112c8a5a1124b5e51776 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor"} -C3L-01976.MethArray.Green.A C3L-01976 CCRCC Methylation_Array tissue_normal CPT0109530006 204930630071_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ad69af07-961d-428a-9981-99835e28b454 5e5445ecd7b3b92f8448c85f4f983072 {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.MethArray.Green.T C3L-01976 CCRCC Methylation_Array tumor CPT0109500009 202234380058_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 df60cad6-f204-4ac5-943b-1994d8573676 b54e86387843c4b4b6773ba0c9d8c4a6 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor"} -C3L-01976.MethArray.Red.A C3L-01976 CCRCC Methylation_Array tissue_normal CPT0109530006 204930630071_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 46c339b7-fc6c-4032-9431-86fd5b167626 7ad347639958ae0a592f00143da461fe {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.MethArray.Red.T C3L-01976 CCRCC Methylation_Array tumor CPT0109500009 202234380058_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 1d636947-9e6c-4cc4-bb1e-1ce2b9e2735f 9039027bb5470489dffd4df1ee9bb426 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor"} -C3L-01976.miRNA-Seq.A.hg38 C3L-01976 CCRCC miRNA-Seq tissue_normal CPT0109530009 435ef1e6-d700-4c20-b73f-c512c5f66db7_mirnaseq_gdc_realn.bam 314882085 BAM harmonized CPTAC3 b723d432-be91-458c-bb29-0a6b11f10671 19d8bbed1469a4554ec086384603d960 {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.miRNA-Seq.S41_L002_R1.A C3L-01976 CCRCC miRNA-Seq tissue_normal CPT0109530009 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 280822664 BAM S41_L002_R1 unaligned CPTAC3 28b103a1-4559-494a-a9ad-660fb967da61 19272522084494a1f6d29703a30e23c0 {"aliquot_tag": "ALQ_f4955d9a", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.miRNA-Seq.S41_L003_R1.T C3L-01976 CCRCC miRNA-Seq tumor CPT0109500006 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L003_R1_001.unaln.bam 255307578 BAM S41_L003_R1 unaligned CPTAC3 094999fb-a564-4e6e-a52f-20a79bad8349 5816f3d98d3069c15d14d747fe277bcb {"aliquot_tag": "ALQ_238a3adb", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01976.miRNA-Seq.T.hg38 C3L-01976 CCRCC miRNA-Seq tumor CPT0109500006 0e47b09a-d85a-44e4-b5f7-9d199b542f2b_mirnaseq_gdc_realn.bam 282240999 BAM harmonized CPTAC3 60a893cf-3482-497a-b92b-7007e806dcf6 f2c4a8013201aabd3fc83b6e2b27e0cb {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor"} -C3L-01976.RNA-Seq.chimeric.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.chimeric.gdc_realn.bam 37462774 BAM chimeric harmonized CPTAC3 5dd64d81-7997-47e6-a513-e74f33bcc79e 6155515e010059dea8b1263064eadd8c {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.RNA-Seq.chimeric.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.chimeric.gdc_realn.bam 72275246 BAM chimeric harmonized CPTAC3 657baab4-fa64-4c8d-bf19-2ae4a3af5101 484504fcd861568087c19675a4a2b16d {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor"} -C3L-01976.RNA-Seq.genomic.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.genomic.gdc_realn.bam 9213999713 BAM genomic harmonized CPTAC3 45ced5be-a2ac-422f-a26b-ebbf0ef14207 cecce13600e89aff8e7964c4ac28f327 {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.RNA-Seq.genomic.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.genomic.gdc_realn.bam 7882694965 BAM genomic harmonized CPTAC3 44b9d533-a8bd-4d9b-9be2-adba7c1a6dc3 93a8e82ab3445511a8776dd4c6788b4f {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor"} -C3L-01976.RNA-Seq.S23_L006_R1.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R1_001.fastq.gz 3691412699 FASTQ S23_L006_R1 unaligned CPTAC3 b3250e07-0bc6-42c7-a8dd-02fb49cf327f f52874ecf094b15e3cb14f17c4f39317 {"aliquot_tag": "ALQ_238a3adb", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01976.RNA-Seq.S23_L006_R2.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R2_001.fastq.gz 4047054751 FASTQ S23_L006_R2 unaligned CPTAC3 f25a7b5e-7268-4eb4-84ae-4692e3c8d1ea a39d6ea2286eddbf62e0318ac8e4053d {"aliquot_tag": "ALQ_238a3adb", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01976.RNA-Seq.S3_L007_R1.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 4344531327 FASTQ S3_L007_R1 unaligned CPTAC3 267560c1-339b-41b6-98b4-64fc6f6d3b32 1dce5f8585059c68f9a258fa2ce16ee1 {"aliquot_tag": "ALQ_f4955d9a", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.RNA-Seq.S3_L007_R2.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4730697904 FASTQ S3_L007_R2 unaligned CPTAC3 7a9e9a56-7d15-4694-b96f-7ccd5e6047a7 2078a0b99bf23876074f75dd80aa7369 {"aliquot_tag": "ALQ_f4955d9a", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.RNA-Seq.transcriptome.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.transcriptome.gdc_realn.bam 11387371805 BAM transcriptome harmonized CPTAC3 5904465d-07e9-4d4f-a61c-e9ab238000ca 3297fa724515742efc03502dff4874fe {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.RNA-Seq.transcriptome.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.transcriptome.gdc_realn.bam 10021089163 BAM transcriptome harmonized CPTAC3 99e50577-26de-4fe6-828f-deaab4d20227 9465981924449a0c9bce7e047302d71a {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor"} -C3L-01976.WGS.A C3L-01976 CCRCC WGS tissue_normal CPT0109530006 CPT0109530006.WholeGenome.RP-1303.bam 61506261562 BAM aligned CPTAC3 7c299825-c1cf-49bf-9650-0b3eb9f58f57 9d5e191b85278ec98aa886ff2acfc04d {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.WGS.A.hg38 C3L-01976 CCRCC WGS tissue_normal CPT0109530006 efd244f3-df56-42d6-bd3c-5450de8d34d2_wgs_gdc_realn.bam 89284417837 BAM harmonized CPTAC3 43d6f523-0230-49a2-8251-2177d23678c8 e48490c84a586d020c9dca3c003ed8ff {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.WGS.N C3L-01976 CCRCC WGS blood_normal CPT0108370002 CPT0108370002.WholeGenome.RP-1303.bam 54539482360 BAM aligned CPTAC3 5d4b7ca8-6f78-4e4e-8d67-da3551f19794 0d1ad833c36be03acf8b3120049af3cf {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01976.WGS.N.hg38 C3L-01976 CCRCC WGS blood_normal CPT0108370002 ab15bc51-38bc-48e9-a7e0-0eff0ea0b193_wgs_gdc_realn.bam 79226057036 BAM harmonized CPTAC3 eaef90be-e8f9-4d83-9d1d-80d58722df04 0fbbf547bcf8ac2805d67280b6f7ca63 {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01976.WGS.T C3L-01976 CCRCC WGS tumor CPT0109500009 CPT0109500009.WholeGenome.RP-1303.bam 66873289818 BAM aligned CPTAC3 4b42962e-d5ef-4f2d-9f4a-f2b1bf20ea48 3b6ced6591848f7e17396c6eeed58b07 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor"} -C3L-01976.WGS.T.hg38 C3L-01976 CCRCC WGS tumor CPT0109500009 b4417085-0f60-4be4-8863-aed4c91e929a_wgs_gdc_realn.bam 98551827815 BAM harmonized CPTAC3 59fe693a-b558-4aa3-8e93-524279abe773 4aa37fd59a074b33770f94f31aed53a3 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor"} -C3L-01976.WXS.A C3L-01976 CCRCC WXS tissue_normal CPT0109530006 CPT0109530006.WholeExome.RP-1303.bam 31998837806 BAM aligned CPTAC3 e431bb6c-f644-40d8-bfdf-97c776ccd67e 11b8c27be227b8a4845a2349a3c5480e {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.WXS.A.hg38 C3L-01976 CCRCC WXS tissue_normal CPT0109530006 efd244f3-df56-42d6-bd3c-5450de8d34d2_wxs_gdc_realn.bam 44581154421 BAM harmonized CPTAC3 e0aae0de-b507-4bcd-a983-d53cde0496e7 4e16500dc2455e5a56af8188413e1047 {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01976.WXS.N C3L-01976 CCRCC WXS blood_normal CPT0108370002 CPT0108370002.WholeExome.RP-1303.bam 37151772775 BAM aligned CPTAC3 4a6946a9-477c-46ab-be34-c95052e57c3f 19c911d86e4c74c6f84dc039dae940db {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01976.WXS.N.hg38 C3L-01976 CCRCC WXS blood_normal CPT0108370002 ab15bc51-38bc-48e9-a7e0-0eff0ea0b193_wxs_gdc_realn.bam 51325964618 BAM harmonized CPTAC3 090e6f43-0f8d-421b-98cd-70ebde1573cc 21ecd3f70ecfddff3be704bad8786e4e {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-01976.WXS.T C3L-01976 CCRCC WXS tumor CPT0109500009 CPT0109500009.WholeExome.RP-1303.bam 39452809913 BAM aligned CPTAC3 5c68a215-39b6-4e79-bcb1-b89590ae9381 550a0e6099edc3ce9b1b77d36818b76d {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor"} -C3L-01976.WXS.T.hg38 C3L-01976 CCRCC WXS tumor CPT0109500009 b4417085-0f60-4be4-8863-aed4c91e929a_wxs_gdc_realn.bam 53778951363 BAM harmonized CPTAC3 ff3a4653-7af8-4f81-af13-a56e420438ac 334432833ca3c09a7c6eab0b8fd648b6 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor"} -C3L-01978.MethArray.Green.A C3L-01978 CCRCC Methylation_Array tissue_normal CPT0125660006 204930630034_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a04a7bc5-cf67-4e2a-9c2c-6d52f7dd984c bef4af59fd78f51124dd481164685ce5 {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.MethArray.Green.T C3L-01978 CCRCC Methylation_Array tumor CPT0125620007 203219720211_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a0340940-c79f-4488-8676-2b7c0abc5ea6 38a8955e58f0074c1dd4ac67a9dd426d {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor"} -C3L-01978.MethArray.Red.A C3L-01978 CCRCC Methylation_Array tissue_normal CPT0125660006 204930630034_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 390ea357-f6d4-46c5-83f4-c39944d71315 23ebec007b1705385468f91fe7b9f746 {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.MethArray.Red.T C3L-01978 CCRCC Methylation_Array tumor CPT0125620007 203219720211_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 3f6f9673-8880-4e6d-9484-2ce31d180edd 98829e3b54e5ddfca18998944388e06a {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor"} -C3L-01978.miRNA-Seq.A.hg38 C3L-01978 CCRCC miRNA-Seq tissue_normal CPT0125660009 de604bf7-e7a3-4170-a30f-a7af5cb79e5d_mirnaseq_gdc_realn.bam 221505679 BAM harmonized CPTAC3 1808f412-3e50-488e-b564-f3c3b0cde43b 56382ee3f8f97a67a3ba532f30d6b283 {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.miRNA-Seq.S11_L004_R1.T C3L-01978 CCRCC miRNA-Seq tumor CPT0125620010 190108_UNC31-K00269_0176_AHYGLVBBXX_GGCTAC_S11_L004_R1_001.unaln.bam 272069745 BAM S11_L004_R1 unaligned CPTAC3 e78076a7-62a8-4e9f-b780-86dd0c4ee7dc 4bc0767924078b5eaafc110293667972 {"aliquot_tag": "ALQ_aa23e268", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01978.miRNA-Seq.S18_L002_R1.A C3L-01978 CCRCC miRNA-Seq tissue_normal CPT0125660009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L002_R1_001.unaln.bam 202843613 BAM S18_L002_R1 unaligned CPTAC3 83ace193-77a0-43e7-ad7c-eb3bf2c4d568 eaeae8c7fec5c76a23a060ee520c7c21 {"aliquot_tag": "ALQ_3f64cd4d", "sample": "S18", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.miRNA-Seq.T.hg38 C3L-01978 CCRCC miRNA-Seq tumor CPT0125620010 142a5f7e-4684-4297-be81-8a9910d8632e_mirnaseq_gdc_realn.bam 305255760 BAM harmonized CPTAC3 40655f76-9397-44b3-b54f-5bbedc49642c f2344f094266f08556c4e6414fb45882 {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor"} -C3L-01978.RNA-Seq.chimeric.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.chimeric.gdc_realn.bam 113294334 BAM chimeric harmonized CPTAC3 e94c42e3-5161-4428-8f8d-a60940758216 871c2b680b7ecd29224f391b7f079eba {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.RNA-Seq.chimeric.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.chimeric.gdc_realn.bam 131803739 BAM chimeric harmonized CPTAC3 92d98c67-0bf6-46bf-9555-3e9591d0747b 851147de18e2cf5868f06254c3c510fa {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor"} -C3L-01978.RNA-Seq.genomic.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.genomic.gdc_realn.bam 10058073545 BAM genomic harmonized CPTAC3 07f14926-7ba4-4b45-93c9-4d727976932c f784b30ae3e9fca0a489c5541c1c41c9 {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.RNA-Seq.genomic.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.genomic.gdc_realn.bam 8517179899 BAM genomic harmonized CPTAC3 56f7d745-20aa-4d05-9bb1-5a5b43b7e73a f65ecd8d5cd134e19cf6ea5372bea941 {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor"} -C3L-01978.RNA-Seq.S17_L007_R1.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R1_001.fastq.gz 4460922507 FASTQ S17_L007_R1 unaligned CPTAC3 a2c04b44-bb70-4906-8b11-c4f786a3b3f8 7a979f05a9520bf0f46ee6b9252efac8 {"aliquot_tag": "ALQ_3f64cd4d", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.RNA-Seq.S17_L007_R2.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R2_001.fastq.gz 4895935748 FASTQ S17_L007_R2 unaligned CPTAC3 38933543-6714-41fb-9689-2cfbb8a1a0ae 66c54ba685e6cc926b0647597c66ff95 {"aliquot_tag": "ALQ_3f64cd4d", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.RNA-Seq.S1_L001_R1.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3819803528 FASTQ S1_L001_R1 unaligned CPTAC3 2b31b66f-409d-46bd-8dbb-b15fac6a8758 9fc76f5f0164e5c83794db8b35d39d59 {"aliquot_tag": "ALQ_aa23e268", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-01978.RNA-Seq.S1_L001_R2.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4399810119 FASTQ S1_L001_R2 unaligned CPTAC3 f3b47899-289b-4f3a-9f10-c3c5120bb9b7 91482be9a190429f6f0ebbd8f633f97c {"aliquot_tag": "ALQ_aa23e268", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-01978.RNA-Seq.transcriptome.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.transcriptome.gdc_realn.bam 10978742330 BAM transcriptome harmonized CPTAC3 2d26873c-ecb1-4665-8ea5-0ddd7f03f6bb 9af01096f4f97d03e1b762147fc37ca3 {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.RNA-Seq.transcriptome.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.transcriptome.gdc_realn.bam 9935084661 BAM transcriptome harmonized CPTAC3 91c336d3-72b6-4b0d-9756-2057bf9c260a d4ca7d01dbfe603fb5eb60b9bc606c0b {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor"} -C3L-01978.WGS.A C3L-01978 CCRCC WGS tissue_normal CPT0125660006 CPT0125660006.WholeGenome.RP-1303.bam 58720387517 BAM aligned CPTAC3 274d285c-e32e-4527-91e1-7f356cec8e1e 5967bc9dfa0acfdbdc1b4573dfdf325d {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.WGS.A.hg38 C3L-01978 CCRCC WGS tissue_normal CPT0125660006 35b30ca5-34d6-493c-b5e4-732210bd3650_wgs_gdc_realn.bam 83589696983 BAM harmonized CPTAC3 3453c2e7-e52f-40d4-a11c-e11bb52cd27c dfa0fbf79c3e729d70f36014623c61df {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.WGS.N C3L-01978 CCRCC WGS blood_normal CPT0124260002 CPT0124260002.WholeGenome.RP-1303.bam 61569685388 BAM aligned CPTAC3 4adc358c-5dd2-4d67-a2dc-cf6cb5920d87 34d3cddc2709bc5e44124692247b71a7 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal"} -C3L-01978.WGS.N.hg38 C3L-01978 CCRCC WGS blood_normal CPT0124260002 d3c7ef1e-8ca2-458d-bbe1-08c9be2d33c9_wgs_gdc_realn.bam 89017386053 BAM harmonized CPTAC3 855e6376-eac5-4ed4-9276-ae6763fc9359 507db13839d838a44430962268229b55 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal"} -C3L-01978.WGS.T C3L-01978 CCRCC WGS tumor CPT0125620007 CPT0125620007.WholeGenome.RP-1303.bam 49162760412 BAM aligned CPTAC3 05897f56-2050-4750-8dc3-30f727f9f32e b49951f077b31cf93d2dc7424b571030 {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor"} -C3L-01978.WGS.T.hg38 C3L-01978 CCRCC WGS tumor CPT0125620007 0c1c2a5e-1bcd-477f-8f3d-0a9493fff631_wgs_gdc_realn.bam 71356471541 BAM harmonized CPTAC3 97ff763d-d813-46ba-bc51-02a874fee3c8 8baf9b7cb65a2a618c07058fafea4bae {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor"} -C3L-01978.WXS.A C3L-01978 CCRCC WXS tissue_normal CPT0125660006 CPT0125660006.WholeExome.RP-1303.bam 26288364696 BAM aligned CPTAC3 e13a258a-5ff3-4891-9d6d-0de08c4a4ac0 6d9f94fea687613d4348b1915fa865ed {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.WXS.A.hg38 C3L-01978 CCRCC WXS tissue_normal CPT0125660006 35b30ca5-34d6-493c-b5e4-732210bd3650_wxs_gdc_realn.bam 36179796339 BAM harmonized CPTAC3 a0a121c5-6889-4bce-ba6b-faa8f1aea5b3 4da1111b3b18e0027d923d4bae9bda5d {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-01978.WXS.N C3L-01978 CCRCC WXS blood_normal CPT0124260002 CPT0124260002.WholeExome.RP-1303.bam 24849696567 BAM aligned CPTAC3 9103376d-be27-4e5c-81d3-aad67b724005 b713df418a0a52431271316b91c6c1a4 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal"} -C3L-01978.WXS.N.hg38 C3L-01978 CCRCC WXS blood_normal CPT0124260002 d3c7ef1e-8ca2-458d-bbe1-08c9be2d33c9_wxs_gdc_realn.bam 34353940480 BAM harmonized CPTAC3 115c9a39-1093-40e6-9cf8-d346e7b40c5f e34cfb22f2481a9fafaa3bb31e1a2d35 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal"} -C3L-01978.WXS.T C3L-01978 CCRCC WXS tumor CPT0125620007 CPT0125620007.WholeExome.RP-1303.bam 21060408848 BAM aligned CPTAC3 f6343e42-44ac-4d58-8644-fb94a67fefb0 3e0d9ff19333f97f51fe8e5378eb08dd {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor"} -C3L-01978.WXS.T.hg38 C3L-01978 CCRCC WXS tumor CPT0125620007 0c1c2a5e-1bcd-477f-8f3d-0a9493fff631_wxs_gdc_realn.bam 29003463196 BAM harmonized CPTAC3 8071b698-5b98-4cfa-8d0d-f101ad2da860 4e678feef5e9879fd6a8c77ad6d42181 {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor"} -C3L-02041.MethArray.Green.T C3L-02041 GBM Methylation_Array tumor CPT0125510009 203273200110_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 79158a18-f3c0-4aac-aee2-3184f882c7c2 6c570878bbae57bf42b3db1ed69fca97 {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor"} -C3L-02041.MethArray.Red.T C3L-02041 GBM Methylation_Array tumor CPT0125510009 203273200110_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 c6db8273-09b4-4f2e-bc85-8e4138d9ac97 15474172fd83723e9b46c61c92ad53ab {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor"} -C3L-02041.miRNA-Seq.S39_L004_R1.T C3L-02041 GBM miRNA-Seq tumor CPT0125510006 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L004_R1_001.unaln.bam 265035362 BAM S39_L004_R1 unaligned CPTAC3 e5f84412-2221-4c91-bcca-a7e10b553632 aea1ffffb6d3cd25402b3a9247d94a58 {"aliquot_tag": "ALQ_9b6f7e62", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02041.miRNA-Seq.T.hg38 C3L-02041 GBM miRNA-Seq tumor CPT0125510006 4a05c2ea-890d-45e3-8dce-4be90e5d3022_mirnaseq_gdc_realn.bam 298015066 BAM harmonized CPTAC3 3b853de2-35ca-4b89-ab96-be5b7124109a ae8b05eb1a785ce53bf5ce3b646c5366 {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor"} -C3L-02041.RNA-Seq.chimeric.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.chimeric.gdc_realn.bam 48349366 BAM chimeric harmonized CPTAC3 4a6a0511-42fc-42a4-a02b-90874930631f 9c5d87cb973d01e82c1177c697addd82 {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor"} -C3L-02041.RNA-Seq.genomic.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.genomic.gdc_realn.bam 8188525949 BAM genomic harmonized CPTAC3 c4d214c0-723f-4355-b575-c1aeb2f1412f 148f54a129fe4071efc457fada973f3f {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor"} -C3L-02041.RNA-Seq.S17_L005_R1.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R1_001.fastq.gz 3831582154 FASTQ S17_L005_R1 unaligned CPTAC3 1da7dff2-8bad-4a10-9b89-de71e20efb67 a22616c520d16f04a41ffcb4de597709 {"aliquot_tag": "ALQ_9b6f7e62", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02041.RNA-Seq.S17_L005_R2.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R2_001.fastq.gz 4207462558 FASTQ S17_L005_R2 unaligned CPTAC3 5bb2b2d1-b7a2-4028-84bd-0b8603028e4b be84a670ab034caed2ea0452c546e5ec {"aliquot_tag": "ALQ_9b6f7e62", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02041.RNA-Seq.transcriptome.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.transcriptome.gdc_realn.bam 8390028143 BAM transcriptome harmonized CPTAC3 6a87434c-8d6a-4d34-b925-416d8800d219 a717b85d45fae4eea156e54f82299d71 {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor"} -C3L-02041.WGS.N C3L-02041 GBM WGS blood_normal CPT0124240002 CPT0124240002.WholeGenome.RP-1303.bam 56509025370 BAM aligned CPTAC3 985fcf02-2005-4781-afb7-fbe2e5c0ed20 e595372c2461e93aeed76ead0f945b8b {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal"} -C3L-02041.WGS.N.hg38 C3L-02041 GBM WGS blood_normal CPT0124240002 413408c0-fdd9-4e15-85da-132bfe999cb2_wgs_gdc_realn.bam 82504136941 BAM harmonized CPTAC3 5e4208c9-c462-4b08-8e72-a5842dae8f86 e459941c3ce01efe495bbb498cc36efa {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal"} -C3L-02041.WGS.T C3L-02041 GBM WGS tumor CPT0125510009 CPT0125510009.WholeGenome.RP-1303.bam 66143376831 BAM aligned CPTAC3 919c7df1-4f22-414e-a282-be607f711f01 7b16a36bc02e5c2b555038dd26408689 {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor"} -C3L-02041.WGS.T.hg38 C3L-02041 GBM WGS tumor CPT0125510009 e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wgs_gdc_realn.bam 96364360840 BAM harmonized CPTAC3 b5a9cb82-9dba-4166-ac51-13c08ab9bb23 5c5852bb7d309f57a0dfec13c2c2a46d {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor"} -C3L-02041.WXS.N C3L-02041 GBM WXS blood_normal CPT0124240002 CPT0124240002.WholeExome.RP-1303.bam 32194046670 BAM aligned CPTAC3 b6efe144-59e9-4b34-ae37-a40b15756890 674c8024136c90b966396664a23a350f {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal"} -C3L-02041.WXS.N.hg38 C3L-02041 GBM WXS blood_normal CPT0124240002 413408c0-fdd9-4e15-85da-132bfe999cb2_wxs_gdc_realn.bam 43967043277 BAM harmonized CPTAC3 f9e7a4d9-9f89-495b-9db9-502200a26d09 96f8add96545e56f76e69cf5acf546ea {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal"} -C3L-02041.WXS.T C3L-02041 GBM WXS tumor CPT0125510009 CPT0125510009.WholeExome.RP-1303.bam 40627967636 BAM aligned CPTAC3 bc28db96-ebdf-4abd-b7ef-eae25253aa77 b878d73dab800cfca228b98e37bea62e {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor"} -C3L-02041.WXS.T.hg38 C3L-02041 GBM WXS tumor CPT0125510009 e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wxs_gdc_realn.bam 55570315591 BAM harmonized CPTAC3 b9073c62-2ed2-4bfe-8ecc-154068508194 460ea9bafc0811bfa41a621332f18a6d {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor"} -C3L-02109.MethArray.Green.T C3L-02109 PDA Methylation_Array tumor CPT0109010010 203028200014_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dfb41a80-435f-4a0a-9645-d0bd560b9f4e 78938de5ed3e11063e914ff9e482325c {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor"} -C3L-02109.MethArray.Red.T C3L-02109 PDA Methylation_Array tumor CPT0109010010 203028200014_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 bd0493ee-c227-4a7a-996c-786526f7918d 1fb3ed571fbe29a95efb4aacde8f7804 {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor"} -C3L-02109.miRNA-Seq.S33_L004_R1.T C3L-02109 PDA miRNA-Seq tumor CPT0109010007 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L004_R1_001.unaln.bam 220206075 BAM S33_L004_R1 unaligned CPTAC3 714a8d2c-00e4-41f2-b7ab-97e83963f5e4 b5e95c879717e9cf666c94d8a6c1f66a {"aliquot_tag": "ALQ_3920b24e", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02109.miRNA-Seq.T.hg38 C3L-02109 PDA miRNA-Seq tumor CPT0109010007 36fd5dcf-c8e1-4a17-88fd-d0f54b250cf9_mirnaseq_gdc_realn.bam 247619653 BAM harmonized CPTAC3 e54bcfa0-9eb7-4075-9fc4-ea86be5a1b72 64361a773ca51c7d71653d50fb2e0529 {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor"} -C3L-02109.RNA-Seq.chimeric.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.chimeric.gdc_realn.bam 45036488 BAM chimeric harmonized CPTAC3 9a4cfce6-d21f-4f31-a075-dbf068e104d1 1c24dc9d7435f918224f22d22b90542c {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor"} -C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.genomic.gdc_realn.bam 7204774029 BAM genomic harmonized CPTAC3 e3bd1a3a-62c0-4733-94b3-4f703d09793f 72bc09f145f91931f9c6ed4080943c84 {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor"} -C3L-02109.RNA-Seq.S4_L006_R1.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R1_001.fastq.gz 3150820705 FASTQ S4_L006_R1 unaligned CPTAC3 0143fe73-deea-484e-8fd5-6bdf9fd73640 d8156845d50e4fe92caa41161ec526b1 {"aliquot_tag": "ALQ_3920b24e", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02109.RNA-Seq.S4_L006_R2.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R2_001.fastq.gz 3461729862 FASTQ S4_L006_R2 unaligned CPTAC3 02819eb9-c422-4438-a0b7-44bbfbb1bec0 2cc7acf9123b68eaa1c05690fdff3928 {"aliquot_tag": "ALQ_3920b24e", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02109.RNA-Seq.transcriptome.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.transcriptome.gdc_realn.bam 8329425662 BAM transcriptome harmonized CPTAC3 a1a6b0bb-0dcc-466c-878f-bbf904d8b9d4 0f73ab853aec13006f1f8fdd0842ee5e {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor"} -C3L-02109.Targeted.T C3L-02109 PDA Targeted_Sequencing tumor CPT0109010010_1 CPT0109010010_1.CustomSelection.RP-1303.PDO-18786.bam 4426058308 BAM aligned CPTAC3 4c280297-e9c2-42ae-9f98-c6e6d91a53a5 6351fd8a1e97bb31b88defe1d76dbda3 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor"} -C3L-02109.Targeted.T.hg38 C3L-02109 PDA Targeted_Sequencing tumor CPT0109010010_1 f3517079-507e-475a-9fd1-b355d59be341_targetedsequencing_gdc_realn.bam 6203999862 BAM harmonized CPTAC3 9dee973f-9a14-4a81-942d-259632ee75cc ac848ec9d99ed3d2d8eea18f3f653f68 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor"} -C3L-02109.WGS.N C3L-02109 PDA WGS blood_normal CPT0109040002 CPT0109040002.WholeGenome.RP-1303.bam 56637976369 BAM aligned CPTAC3 abf92be9-5662-4ba3-b668-861eb6136ff4 d1f2fa29faf8a060ca4223f7268d5f9e {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02109.WGS.N.hg38 C3L-02109 PDA WGS blood_normal CPT0109040002 c38b9acb-52d8-4fd9-8ee7-2e4ac8175fcc_wgs_gdc_realn.bam 83298578297 BAM harmonized CPTAC3 9d00e599-0b48-4775-b3aa-746c0bafe349 c2a5db840506d17c7d872d74c3a3c850 {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02109.WGS.T C3L-02109 PDA WGS tumor CPT0109010010 CPT0109010010.WholeGenome.RP-1303.bam 61141379630 BAM aligned CPTAC3 4aa2671f-f84c-457e-8c65-a8ab15e04770 b47a0d9eff8aaf0a7c3bc44837d2157b {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor"} -C3L-02109.WGS.T.hg38 C3L-02109 PDA WGS tumor CPT0109010010 ce17f9d1-748e-4d5e-a4bc-031ea3ea0291_wgs_gdc_realn.bam 88656281572 BAM harmonized CPTAC3 d241dea6-9bc0-4a63-9d58-3390f4287e7b 319221d494d47547066d13a43da88a47 {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor"} -C3L-02109.WXS.N C3L-02109 PDA WXS blood_normal CPT0109040002 CPT0109040002.WholeExome.RP-1303.bam 25258775197 BAM aligned CPTAC3 21dbc454-2918-4685-a1fd-502c22e2d7ac b0bd38512c5e299e6459f80461de111a {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02109.WXS.N.hg38 C3L-02109 PDA WXS blood_normal CPT0109040002 c38b9acb-52d8-4fd9-8ee7-2e4ac8175fcc_wxs_gdc_realn.bam 33521438633 BAM harmonized CPTAC3 3af84bd1-f6a6-4024-addb-6000472700c1 a8878ee3995e984b709754888abd931b {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02109.WXS.T C3L-02109 PDA WXS tumor CPT0109010010_1 CPT0109010010_1.WholeExome.RP-1303.bam 49545726309 BAM aligned CPTAC3 a0c829f5-3e9b-4a9b-a64f-98fd4b8ff7ca 88219f07464458afc83019f9b5d28707 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor"} -C3L-02109.WXS.T C3L-02109 PDA WXS tumor CPT0109010010 CPT0109010010.WholeExome.RP-1303.bam 20841707975 BAM aligned CPTAC3 31c3e690-5713-44ee-85f5-d743db10bfbf 341173f96cbe210b7a7c72f5546fc16d {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor"} -C3L-02109.WXS.T.hg38 C3L-02109 PDA WXS tumor CPT0109010010_1 f3517079-507e-475a-9fd1-b355d59be341_wxs_gdc_realn.bam 67713192099 BAM harmonized CPTAC3 4de48751-0ef3-49a4-8f1e-8100f28f6859 2db8f7c8d4bc38851550cfa6405db9a7 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor"} -C3L-02109.WXS.T.hg38 C3L-02109 PDA WXS tumor CPT0109010010 ce17f9d1-748e-4d5e-a4bc-031ea3ea0291_wxs_gdc_realn.bam 28266730503 BAM harmonized CPTAC3 dcd7888d-9b18-4db5-8167-75cae4b4d0e9 6d1be9b1222a859da56614c7eae0082d {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor"} -C3L-02112.MethArray.Green.A C3L-02112 PDA Methylation_Array tissue_normal CPT0124430011 203561620064_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 90aad1ed-9609-463c-a103-cf01b5a256c1 33757a9f3b265090707493e94ca7f2b0 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.MethArray.Green.T C3L-02112 PDA Methylation_Array tumor CPT0124410007 203028200023_R08C01_Grn.idat 13676229 IDAT Green NA CPTAC3 6f5f39d4-1e79-4a60-9afb-e85866b9f328 fff362f93595ef850d6fda29483b8cca {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.MethArray.Red.A C3L-02112 PDA Methylation_Array tissue_normal CPT0124430011 203561620064_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 01568ef5-bb13-49e9-a85a-af3ff2b739de 9753d650ea5e6392ab2e2ca7313541d8 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.MethArray.Red.T C3L-02112 PDA Methylation_Array tumor CPT0124410007 203028200023_R08C01_Red.idat 13676229 IDAT Red NA CPTAC3 8ffcf38b-5769-44da-a5ba-31dd4d45d547 612a07bdf5ebdefacc21e4165f4a7295 {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.miRNA-Seq.A.hg38 C3L-02112 PDA miRNA-Seq tissue_normal CPT0124430008 6020dd97-e5da-4d02-87f5-bee7f09de2db_mirnaseq_gdc_realn.bam 215799276 BAM harmonized CPTAC3 744524ab-3e96-4b9c-943f-0176c138696f 8f2c760967f703d62420c59ed1343664 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.miRNA-Seq.S16_L001_R1.A C3L-02112 PDA miRNA-Seq tissue_normal CPT0124430008 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 191093849 BAM S16_L001_R1 unaligned CPTAC3 950cbff0-7545-434d-8600-1b77ded10a8b d2bf50bafa95146a088544eb070f50df {"aliquot_tag": "ALQ_6b3cd814", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.miRNA-Seq.S35_L002_R1.T C3L-02112 PDA miRNA-Seq tumor CPT0124410010 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 209343639 BAM S35_L002_R1 unaligned CPTAC3 aecfbf98-4320-4605-a744-971c2b5e44a0 5b8890a8b145332be3a827a3ecd7097c {"aliquot_tag": "ALQ_63c3207", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02112.miRNA-Seq.T.hg38 C3L-02112 PDA miRNA-Seq tumor CPT0124410010 811ef88c-9863-4dc9-8e02-4f229ef9f96f_mirnaseq_gdc_realn.bam 235270543 BAM harmonized CPTAC3 dc021f94-7b2d-47af-a1d2-3c288f548229 0d38244f88317c6553013b9296e83fb6 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor"} -C3L-02112.RNA-Seq.chimeric.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.chimeric.gdc_realn.bam 112253047 BAM chimeric harmonized CPTAC3 20aac09e-d950-4f10-bc3a-1dc38be8c611 91a1d05c38250e4c8d5f3b6f7e6db540 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.RNA-Seq.chimeric.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.chimeric.gdc_realn.bam 99870007 BAM chimeric harmonized CPTAC3 578ba582-18de-4278-a9ca-659c9c32e1c7 902164d47b0353a84ce6b8199cbe94a6 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor"} -C3L-02112.RNA-Seq.genomic.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.genomic.gdc_realn.bam 9543308198 BAM genomic harmonized CPTAC3 7f2da68c-f986-46f5-9c89-d435bae29878 b2b6733ecc74480142bd3648f5bedce5 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.RNA-Seq.genomic.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.genomic.gdc_realn.bam 9669088708 BAM genomic harmonized CPTAC3 2c2c40e8-d8b7-4922-8c32-d50a6924d099 d6a83ec6df4456dc3fb5960c557491b7 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor"} -C3L-02112.RNA-Seq.S17_L005_R1.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 4315806975 FASTQ S17_L005_R1 unaligned CPTAC3 574ea695-bb46-4fc7-9680-7ffd773b2f72 24b98ae5234da1298fe1b74a838f0b6c {"aliquot_tag": "ALQ_6b3cd814", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.RNA-Seq.S17_L005_R2.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 4552166247 FASTQ S17_L005_R2 unaligned CPTAC3 f612c15d-b0a2-48aa-8ed7-af9e12408f94 b2ebe85adc4da144678d7a3bf5fbb923 {"aliquot_tag": "ALQ_6b3cd814", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.RNA-Seq.S6_L002_R1.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R1_001.fastq.gz 4221573662 FASTQ S6_L002_R1 unaligned CPTAC3 3450378b-d704-4637-b48b-acf54fd1485b 9ff705383fafc759ded658b2cc5d9af3 {"aliquot_tag": "ALQ_63c3207", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02112.RNA-Seq.S6_L002_R2.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R2_001.fastq.gz 4746498476 FASTQ S6_L002_R2 unaligned CPTAC3 2d971539-16b6-4ea0-8290-7af54175280c c4123b5fc102de1fec32cda07076df38 {"aliquot_tag": "ALQ_63c3207", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02112.RNA-Seq.transcriptome.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.transcriptome.gdc_realn.bam 11430455793 BAM transcriptome harmonized CPTAC3 adce7cb8-a6c3-4546-aebb-3ff8143de5a0 56324553978006e4d19aac73960c5214 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.RNA-Seq.transcriptome.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.transcriptome.gdc_realn.bam 11871501094 BAM transcriptome harmonized CPTAC3 f111b1ce-7b2d-47c8-acf8-ce30d8153410 7d4fc6342c5a7d41d906997a9d245875 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor"} -C3L-02112.Targeted.T C3L-02112 PDA Targeted_Sequencing tumor CPT0124410007_1 CPT0124410007_1.CustomSelection.RP-1303.PDO-18786.bam 5456931630 BAM aligned CPTAC3 ef77fe0e-d225-4af8-8388-7cfa9219301a afcca643a40c9237446821074084fa32 {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.Targeted.T.hg38 C3L-02112 PDA Targeted_Sequencing tumor CPT0124410007_1 336738ee-9add-4799-8fed-16489f9792e4_targetedsequencing_gdc_realn.bam 7582470024 BAM harmonized CPTAC3 4486247e-7572-444c-871f-2afca0664cfd 1ea517a396138803ee82ee56f659bc0e {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.WGS.A C3L-02112 PDA WGS tissue_normal CPT0124430011 CPT0124430011.WholeGenome.RP-1303.bam 61066549973 BAM aligned CPTAC3 cfef31d6-8355-437a-aae6-5b6a4789f5b4 f322ee5d63eb248d5b6abe94d3c12dd0 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.WGS.A.hg38 C3L-02112 PDA WGS tissue_normal CPT0124430011 950a0e79-88ac-4d32-b1c3-ad47c68422f2_wgs_gdc_realn.bam 88958552201 BAM harmonized CPTAC3 0d670d40-cbf3-4042-95b7-4929bbb370da eb77d8974133f5c6b9cfba2b247f2fff {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.WGS.N C3L-02112 PDA WGS blood_normal CPT0124440002 CPT0124440002.WholeGenome.RP-1303.bam 54427953706 BAM aligned CPTAC3 d52d31c0-2ee1-4284-b8a4-88b782b3eafe 5be2dd7d100323597cca6641486a9c2b {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02112.WGS.N.hg38 C3L-02112 PDA WGS blood_normal CPT0124440002 3703f210-c6e8-4a95-bf68-bd1ad882b248_wgs_gdc_realn.bam 79077026174 BAM harmonized CPTAC3 06d11f16-218f-4694-a3d2-dcde95df7cc1 7c2da4ab6190a82b71996e6baff4f57f {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02112.WGS.T C3L-02112 PDA WGS tumor CPT0124410007 CPT0124410007.WholeGenome.RP-1303.bam 68303889254 BAM aligned CPTAC3 b1c069a0-fa00-46d9-9b40-f7a3b515ad60 859bda3c8977e1965cfa537a2dff866a {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.WGS.T.hg38 C3L-02112 PDA WGS tumor CPT0124410007 aaeec78e-a832-47ac-9eed-95f9f4e49890_wgs_gdc_realn.bam 99967840663 BAM harmonized CPTAC3 f6500cdd-1fb6-4ad7-8f36-52ea91cbb6da d40a3df4967a5b2ee1aada51dbd57cdb {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.WXS.A C3L-02112 PDA WXS tissue_normal CPT0124430011 CPT0124430011.WholeExome.RP-1303.bam 22752298033 BAM aligned CPTAC3 caa5d357-b20e-4f00-af3e-a65c8e64cf31 6fdeea0f0384e3cc0dfaf7337ceb5c1c {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.WXS.A.hg38 C3L-02112 PDA WXS tissue_normal CPT0124430011 950a0e79-88ac-4d32-b1c3-ad47c68422f2_wxs_gdc_realn.bam 31030604193 BAM harmonized CPTAC3 b0aa3d1e-133e-4f25-ba32-76899e2ff72d 0b5b71783f345b089528cc98ba74e343 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02112.WXS.N C3L-02112 PDA WXS blood_normal CPT0124440002 CPT0124440002.WholeExome.RP-1303.bam 34869369271 BAM aligned CPTAC3 4fa02a6b-f0b7-4511-8736-72d1bd1cf400 26eae754f39cb8ad71a19dcd04db92a3 {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02112.WXS.N.hg38 C3L-02112 PDA WXS blood_normal CPT0124440002 3703f210-c6e8-4a95-bf68-bd1ad882b248_wxs_gdc_realn.bam 47158727938 BAM harmonized CPTAC3 4b5e32b3-4a94-46ad-99d0-145fa0930d9b da207e9e86a8d11cb506ca3dfa8ca74f {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02112.WXS.T C3L-02112 PDA WXS tumor CPT0124410007_1 CPT0124410007_1.WholeExome.RP-1303.bam 49261502253 BAM aligned CPTAC3 17a27987-6867-41cd-8755-89366a5ded55 344eb2ecdf3b30ef52d15ab3e6569427 {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.WXS.T C3L-02112 PDA WXS tumor CPT0124410007 CPT0124410007.WholeExome.RP-1303.bam 24193728328 BAM aligned CPTAC3 ff36b18f-518f-4177-9f05-7fe9c02a4030 25bb5f55dbf60ee8d6308423b8de11a6 {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.WXS.T.hg38 C3L-02112 PDA WXS tumor CPT0124410007_1 336738ee-9add-4799-8fed-16489f9792e4_wxs_gdc_realn.bam 67051374873 BAM harmonized CPTAC3 1e1a3f35-07db-473d-b908-3a02e2247cb6 f1bab9f3018389c2394ad299b73e8637 {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor"} -C3L-02112.WXS.T.hg38 C3L-02112 PDA WXS tumor CPT0124410007 aaeec78e-a832-47ac-9eed-95f9f4e49890_wxs_gdc_realn.bam 32571497520 BAM harmonized CPTAC3 39753220-4d9e-487b-ae86-b30c5e9bfa3e 7b547116ec24cd940fb7105d3c037aee {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor"} -C3L-02115.MethArray.Green.A C3L-02115 PDA Methylation_Array tissue_normal CPT0109130006 203561620159_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 975bef82-84b3-4b03-a0ab-dfdb94fbc972 dc688d16588d6f18c0fa78c23ff2ce9f {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02115.MethArray.Green.T C3L-02115 PDA Methylation_Array tumor CPT0109110012 203027390081_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 27f383a2-96b4-46b4-bef9-4716d1bc22d7 495f6b237f7c174b4a19a8eac86ff0ce {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor"} -C3L-02115.MethArray.Red.A C3L-02115 PDA Methylation_Array tissue_normal CPT0109130006 203561620159_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1d53a6a7-c3c1-416e-89a7-96507183a3f0 6b625f0bd74f6aa568b174144ae87a75 {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02115.MethArray.Red.T C3L-02115 PDA Methylation_Array tumor CPT0109110012 203027390081_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 327f444d-e70a-4aaa-9e88-412cbf93eb32 bd02ba291f5d5dfa884fd970202cd60f {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor"} -C3L-02115.miRNA-Seq.S34_L004_R1.T C3L-02115 PDA miRNA-Seq tumor CPT0109110007 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L004_R1_001.unaln.bam 251095764 BAM S34_L004_R1 unaligned CPTAC3 5c2de421-27da-4b6f-b5f1-e9d6591a75f5 118db2bdaa48372566e1d94101a37e13 {"aliquot_tag": "ALQ_f27c61eb", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02115.miRNA-Seq.T.hg38 C3L-02115 PDA miRNA-Seq tumor CPT0109110007 9036480e-0b70-4225-9958-2cd4b8047daa_mirnaseq_gdc_realn.bam 277355365 BAM harmonized CPTAC3 8bc99a91-dc76-4f7f-bbbd-78b3e40b0fbf 44bbfb11777b33efabf33edd54652b7c {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor"} -C3L-02115.RNA-Seq.chimeric.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.chimeric.gdc_realn.bam 34660769 BAM chimeric harmonized CPTAC3 2b7412fb-ef42-4102-bc41-f116c5e70167 0607dbe1d682c5a2ae5ec7030ff8e106 {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor"} -C3L-02115.RNA-Seq.genomic.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.genomic.gdc_realn.bam 10904557177 BAM genomic harmonized CPTAC3 54353d74-983f-4983-a9b5-d202935cd102 8d6017c23fccb5c6707e4129d351d4ed {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor"} -C3L-02115.RNA-Seq.S22_L006_R1.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R1_001.fastq.gz 4698507359 FASTQ S22_L006_R1 unaligned CPTAC3 ed7a42f9-50e2-4d06-a6e5-beab067a59ea 7e5a67e118ae2fd4b85ea6c0df02f295 {"aliquot_tag": "ALQ_f27c61eb", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02115.RNA-Seq.S22_L006_R2.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R2_001.fastq.gz 5150077127 FASTQ S22_L006_R2 unaligned CPTAC3 b0b93f1a-895c-4d8d-884f-0dbc09f12d23 a785ac4f5b3f7f80df99d922e12581bb {"aliquot_tag": "ALQ_f27c61eb", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02115.RNA-Seq.transcriptome.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.transcriptome.gdc_realn.bam 14649203886 BAM transcriptome harmonized CPTAC3 d19666b4-455f-4ea7-b25c-fd2eaccf0afd fe339709116cd1d6d98b7e4d27105be5 {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor"} -C3L-02115.WGS.A C3L-02115 PDA WGS tissue_normal CPT0109130006 CPT0109130006.WholeGenome.RP-1303.bam 54336516730 BAM aligned CPTAC3 09f9358c-b391-4d57-9d75-ed5f01740355 f13c38945f66dc1509e1fd1492796d8e {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02115.WGS.A.hg38 C3L-02115 PDA WGS tissue_normal CPT0109130006 2bec91ff-e669-4703-be26-6b2666ec0e5b_wgs_gdc_realn.bam 80297670525 BAM harmonized CPTAC3 6d55db3e-eac1-4349-b6c7-277469bec1fc e6534eef59139bd9a3531768fda8953c {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02115.WGS.N C3L-02115 PDA WGS blood_normal CPT0109140002 CPT0109140002.WholeGenome.RP-1303.bam 56774028684 BAM aligned CPTAC3 c50a6152-4221-4f27-91c4-4012ca031c59 22c89c98898ae7656ae8ad516f86661d {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal"} -C3L-02115.WGS.N.hg38 C3L-02115 PDA WGS blood_normal CPT0109140002 ee07d9ad-7e3e-475e-828b-e949994a32ee_wgs_gdc_realn.bam 83289381182 BAM harmonized CPTAC3 4cd1cde5-41f6-40bc-9ab6-8a99f48bf61c 668df90b0af9b6ba5df98c5686050d3b {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal"} -C3L-02115.WGS.T C3L-02115 PDA WGS tumor CPT0109110012 CPT0109110012.WholeGenome.RP-1303.bam 67259747287 BAM aligned CPTAC3 b8ea5716-276f-4ffc-9c28-bd89d3c9a851 6d7f08dd5bfa76303e2bec5516df4caf {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor"} -C3L-02115.WGS.T.hg38 C3L-02115 PDA WGS tumor CPT0109110012 15188d57-8f0a-4864-a5a7-df81b6ecc496_wgs_gdc_realn.bam 97097446413 BAM harmonized CPTAC3 bfe80275-f58c-4873-8361-b305d7815db9 8ab9f9b15942cb4bcf8cff0dcc8e2e25 {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor"} -C3L-02115.WXS.A C3L-02115 PDA WXS tissue_normal CPT0109130006 CPT0109130006.WholeExome.RP-1303.bam 30167228875 BAM aligned CPTAC3 2a21c93f-b958-4ae9-b469-4b8f8607f477 42102d25123b5222363488f4f0165fd9 {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02115.WXS.A.hg38 C3L-02115 PDA WXS tissue_normal CPT0109130006 2bec91ff-e669-4703-be26-6b2666ec0e5b_wxs_gdc_realn.bam 40270859359 BAM harmonized CPTAC3 c2db38d9-4da4-41ec-a299-1580323c1927 f2c4e208178cbc6c1a4bd6f50db83ac3 {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02115.WXS.N C3L-02115 PDA WXS blood_normal CPT0109140002 CPT0109140002.WholeExome.RP-1303.bam 36842946570 BAM aligned CPTAC3 7da6e50d-5ae7-4e34-a6ff-23e88a87fb02 6e660d4ee6b399209b95ea77b663ce43 {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal"} -C3L-02115.WXS.N.hg38 C3L-02115 PDA WXS blood_normal CPT0109140002 ee07d9ad-7e3e-475e-828b-e949994a32ee_wxs_gdc_realn.bam 50901641303 BAM harmonized CPTAC3 d57672bf-cc23-41f7-92f7-187470512dd9 a4b5623a3bf1aacafb6fb4aac25e49b6 {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal"} -C3L-02115.WXS.T C3L-02115 PDA WXS tumor CPT0109110012_1 CPT0109110012_1.WholeExome.RP-1303.bam 48355182202 BAM aligned CPTAC3 8eb8b68a-7175-4027-a344-a3853a8caef6 ceefad04012c0af8d05b634b18679b91 {"aliquot_tag": "ALQ_146c7f45", "gdc_sample_type": "Primary Tumor"} -C3L-02115.WXS.T C3L-02115 PDA WXS tumor CPT0109110012 CPT0109110012.WholeExome.RP-1303.bam 22649241520 BAM aligned CPTAC3 fba175ce-db11-4ed9-8e9a-9f1bf3a85889 fcc11621ad4b595496009601ea0745c3 {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor"} -C3L-02115.WXS.T.hg38 C3L-02115 PDA WXS tumor CPT0109110012 15188d57-8f0a-4864-a5a7-df81b6ecc496_wxs_gdc_realn.bam 30506090335 BAM harmonized CPTAC3 2b1cb0ec-609b-47fe-b871-31e39bc6f956 e11ad3c40f89c434d4c0ed60d83bc2b0 {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor"} -C3L-02115.WXS.T.hg38 C3L-02115 PDA WXS tumor CPT0109110012_1 edb8d178-232e-4b8d-84a6-9edfca5a2d9d_wxs_gdc_realn.bam 66312709335 BAM harmonized CPTAC3 a354736d-1fbd-46b9-8b25-56c2f91d32f3 31a9963505ec67609325111bb66e3c5d {"aliquot_tag": "ALQ_146c7f45", "gdc_sample_type": "Primary Tumor"} -C3L-02116.MethArray.Green.A C3L-02116 PDA Methylation_Array tissue_normal CPT0109230006 203561620087_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8c63ed6e-49a1-4e16-a086-c5f1cee491b6 fdd1033dbdbfb6dfd22afe744ca3b56c {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02116.MethArray.Green.T C3L-02116 PDA Methylation_Array tumor CPT0109200010 203028200101_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 722b5f66-7681-494d-af76-3ba8cf9200b6 3f75f93488788a588da548f37b075744 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor"} -C3L-02116.MethArray.Red.A C3L-02116 PDA Methylation_Array tissue_normal CPT0109230006 203561620087_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 07127304-36e8-4a99-8acb-9c93248df496 17ffe09919752eb0ff67252c2967f33e {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02116.MethArray.Red.T C3L-02116 PDA Methylation_Array tumor CPT0109200010 203028200101_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 9a44a46c-7353-4639-957f-1cd0a1cb6ec7 d751bb5b16942cad9a5d99bed534e4e8 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor"} -C3L-02116.miRNA-Seq.S35_L004_R1.T C3L-02116 PDA miRNA-Seq tumor CPT0109200007 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L004_R1_001.unaln.bam 262528202 BAM S35_L004_R1 unaligned CPTAC3 fe76ebe1-37c2-48f7-acc5-14005a284cec 097dd20b62cd83cc7d6d9620b56fb3cf {"aliquot_tag": "ALQ_49883af5", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02116.miRNA-Seq.T.hg38 C3L-02116 PDA miRNA-Seq tumor CPT0109200007 5fffd144-574e-454e-abe3-b73e2514c048_mirnaseq_gdc_realn.bam 289437655 BAM harmonized CPTAC3 fd170de7-b55a-4655-a6dc-3917a689be41 c288ad3b5f66e5b071aca4c8cba61780 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor"} -C3L-02116.RNA-Seq.chimeric.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.chimeric.gdc_realn.bam 82575725 BAM chimeric harmonized CPTAC3 100cb736-0d25-4eb9-9e9a-149a6f93506d 4b5bf1c942ee7dc30a3597df190a0985 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor"} -C3L-02116.RNA-Seq.genomic.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.genomic.gdc_realn.bam 10053463791 BAM genomic harmonized CPTAC3 32a85492-7c1b-4ee8-b15b-5ee057c2b61e 010d10bae578eba36319447f3a67ee05 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor"} -C3L-02116.RNA-Seq.S21_L006_R1.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R1_001.fastq.gz 4382020124 FASTQ S21_L006_R1 unaligned CPTAC3 1640e2fc-33d7-48a9-921b-17f243d88846 c523c8435df9de0b9ba2b115f403bc39 {"aliquot_tag": "ALQ_49883af5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02116.RNA-Seq.S21_L006_R2.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R2_001.fastq.gz 4996451746 FASTQ S21_L006_R2 unaligned CPTAC3 163f8210-0192-4ab8-90d7-26998a55b7f1 682c53cfde6187933ae30c61d4692562 {"aliquot_tag": "ALQ_49883af5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02116.RNA-Seq.transcriptome.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.transcriptome.gdc_realn.bam 11435911118 BAM transcriptome harmonized CPTAC3 9fbac401-480c-4466-9a28-7fbba95cee62 85835dc8ba0aab73c87ad093d5990e65 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor"} -C3L-02116.WGS.A C3L-02116 PDA WGS tissue_normal CPT0109230006 CPT0109230006.WholeGenome.RP-1303.bam 59609816462 BAM aligned CPTAC3 16834d19-39a1-47cd-a09e-f5599bb8584a e290fc0aba24dde5240df4a2af8fc408 {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02116.WGS.A.hg38 C3L-02116 PDA WGS tissue_normal CPT0109230006 03fa49d8-dd1c-4f64-b093-9a49407a4985_wgs_gdc_realn.bam 88041679732 BAM harmonized CPTAC3 743d77d9-287c-4bb1-b2bf-0cfd6d85da4b 4992a827712240c07d1b4e3c97d9b382 {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02116.WGS.N C3L-02116 PDA WGS blood_normal CPT0109240002 CPT0109240002.WholeGenome.RP-1303.bam 57907195983 BAM aligned CPTAC3 2a39cb28-1564-4e9e-b27c-6a39468829d0 bea304f5c0c55f797381b244c1a43886 {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02116.WGS.N.hg38 C3L-02116 PDA WGS blood_normal CPT0109240002 9ab8dcd1-3f06-4847-b8f2-37ecd4b2d4a7_wgs_gdc_realn.bam 84845033742 BAM harmonized CPTAC3 e6c29fee-0963-4eea-8cd9-5442284864c6 ae919fe22246733950d117e3650221f6 {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02116.WGS.T C3L-02116 PDA WGS tumor CPT0109200010 CPT0109200010.WholeGenome.RP-1303.bam 65134074764 BAM aligned CPTAC3 1ad66aaf-18b1-4e7f-b45b-a62cc3ce718e 2b01517561d4c96cd8830a66e20ba523 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor"} -C3L-02116.WGS.T.hg38 C3L-02116 PDA WGS tumor CPT0109200010 95ce0b5d-523c-45e5-9a1c-c006a30ca478_wgs_gdc_realn.bam 95049331673 BAM harmonized CPTAC3 47b1c8d5-0706-4be6-a029-db71b4a94777 a4e3f6b0a548d71ad722d6d17cbd62ad {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor"} -C3L-02116.WXS.A C3L-02116 PDA WXS tissue_normal CPT0109230006 CPT0109230006.WholeExome.RP-1303.bam 47848881896 BAM aligned CPTAC3 52e00a5d-2746-4fe2-bc93-6580165e9d0c 11f7f4f1ba9d902608e149a0e535437b {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02116.WXS.A.hg38 C3L-02116 PDA WXS tissue_normal CPT0109230006 03fa49d8-dd1c-4f64-b093-9a49407a4985_wxs_gdc_realn.bam 65773814436 BAM harmonized CPTAC3 32bdc885-4abb-425b-a6e8-c8955bd06692 2944638e824ed78c3475e3fa3c57aab1 {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02116.WXS.N C3L-02116 PDA WXS blood_normal CPT0109240002 CPT0109240002.WholeExome.RP-1303.bam 48054164596 BAM aligned CPTAC3 0020b81f-7c94-41dc-9e04-e37f2dbe5a15 38b0231ecbe1f82a79a53e60ac8474fc {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02116.WXS.N.hg38 C3L-02116 PDA WXS blood_normal CPT0109240002 9ab8dcd1-3f06-4847-b8f2-37ecd4b2d4a7_wxs_gdc_realn.bam 64053592597 BAM harmonized CPTAC3 12fa2c87-8461-4cc3-92a9-18ece6cf978e 0ea8b45b2d1bc74cf98a685de7f956c3 {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02116.WXS.T C3L-02116 PDA WXS tumor CPT0109200010_1 CPT0109200010_1.WholeExome.RP-1303.bam 58225672727 BAM aligned CPTAC3 e01bd257-f403-4696-8f26-2881ff140683 c1a98038b7db2929870991b8fccae913 {"aliquot_tag": "ALQ_3f10a77c", "gdc_sample_type": "Primary Tumor"} -C3L-02116.WXS.T C3L-02116 PDA WXS tumor CPT0109200010 CPT0109200010.WholeExome.RP-1303.bam 26506340513 BAM aligned CPTAC3 be31c0e2-1b5c-46bc-bd8b-de1f02518516 a1a2ad45742bddd541177dcfaee127d2 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor"} -C3L-02116.WXS.T.hg38 C3L-02116 PDA WXS tumor CPT0109200010_1 8c4729b0-7ceb-4ed0-8358-9b41b4a2d294_wxs_gdc_realn.bam 78928515249 BAM harmonized CPTAC3 4bb41eb0-ac39-4d0e-ad67-7fbfec2b3f7d 61fb38082ea6bd56951f18d463ae7120 {"aliquot_tag": "ALQ_3f10a77c", "gdc_sample_type": "Primary Tumor"} -C3L-02116.WXS.T.hg38 C3L-02116 PDA WXS tumor CPT0109200010 95ce0b5d-523c-45e5-9a1c-c006a30ca478_wxs_gdc_realn.bam 35525830723 BAM harmonized CPTAC3 78fece78-c1c2-49a8-8024-008019ae68a0 959804cd9e0b26d2e46338411b17cb5e {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor"} -C3L-02118.MethArray.Green.T C3L-02118 PDA Methylation_Array tumor CPT0109300010 203028200048_R02C01_Grn.idat 13676232 IDAT Green NA CPTAC3 69ba3ede-139e-4cee-83d8-44786be7ad93 5b6e0a67895c93177b20acdf73460a68 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.MethArray.Red.T C3L-02118 PDA Methylation_Array tumor CPT0109300010 203028200048_R02C01_Red.idat 13676232 IDAT Red NA CPTAC3 b6b2a99e-6936-4b38-9e29-57072598e880 5462147a90f0090e7e7dd93914b1e101 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.miRNA-Seq.S36_L004_R1.T C3L-02118 PDA miRNA-Seq tumor CPT0109300007 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L004_R1_001.unaln.bam 297335988 BAM S36_L004_R1 unaligned CPTAC3 68eb480b-6427-48c7-844a-3bf76e003342 da72a0c3f86d33e7d4755c50df81531e {"aliquot_tag": "ALQ_82d4e950", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02118.miRNA-Seq.T.hg38 C3L-02118 PDA miRNA-Seq tumor CPT0109300007 50b67588-62f4-42e0-a9b4-fcd672ad7466_mirnaseq_gdc_realn.bam 329588832 BAM harmonized CPTAC3 d4aeb1e3-a3b3-4098-9fe2-e2dbe311aa5c 8ce58c37c7a580b05e59cc0a56967ed0 {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor"} -C3L-02118.RNA-Seq.chimeric.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.chimeric.gdc_realn.bam 48433028 BAM chimeric harmonized CPTAC3 628f3358-0d1b-4e84-b0de-d74d3403f87f d7877376b966c9f0406882b93f33c8bb {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor"} -C3L-02118.RNA-Seq.genomic.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.genomic.gdc_realn.bam 8343084789 BAM genomic harmonized CPTAC3 07d8def6-ca76-4062-93eb-1b751939fa06 2579fe89f93c5d69aa5b31148f82437e {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor"} -C3L-02118.RNA-Seq.S19_L005_R1.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 3950659348 FASTQ S19_L005_R1 unaligned CPTAC3 e4e8ef9b-f4c0-417a-9c0f-838050aa29e2 263b3a753011eb458451edd1969f2113 {"aliquot_tag": "ALQ_82d4e950", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02118.RNA-Seq.S19_L005_R2.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4291714218 FASTQ S19_L005_R2 unaligned CPTAC3 ea082c2d-babd-4dbb-8a36-4d8aa6ed65e7 da4fe6c7c2ee00e7df2bb3def5d54181 {"aliquot_tag": "ALQ_82d4e950", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.RNA-Seq.transcriptome.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.transcriptome.gdc_realn.bam 11031472476 BAM transcriptome harmonized CPTAC3 822243a2-b1a8-4b86-8615-184c1ab4b8a1 8d630497ead408659a8f367e8ba1451b {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor"} -C3L-02118.WGS.N C3L-02118 PDA WGS blood_normal CPT0109340002 CPT0109340002.WholeGenome.RP-1303.bam 59071471393 BAM aligned CPTAC3 a5d367f5-42c1-4c56-b014-c4dbedc9cd61 576033be3aee71152093663858acb513 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02118.WGS.N.hg38 C3L-02118 PDA WGS blood_normal CPT0109340002 ee262e1d-0560-4720-9270-41ed676d887b_wgs_gdc_realn.bam 87128184483 BAM harmonized CPTAC3 0851b674-0d5c-4984-84fb-3fbb214abcf6 64e45abd7b2290195a7c7557869c9698 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02118.WGS.T C3L-02118 PDA WGS tumor CPT0109300010 CPT0109300010.WholeGenome.RP-1303.bam 60436678158 BAM aligned CPTAC3 84cb2c32-f172-4dfd-ab15-3c23f196a749 5e98d91b71ada81de68a88a6b5ed8585 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.WGS.T.hg38 C3L-02118 PDA WGS tumor CPT0109300010 bdad17b5-f936-4294-82f1-a0d922da7fcc_wgs_gdc_realn.bam 90414159313 BAM harmonized CPTAC3 5046bb4c-818c-4cbb-992b-8958d1905954 68b91a315f23b44eb83dfcb8bb03ca31 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.WXS.N C3L-02118 PDA WXS blood_normal CPT0109340002 CPT0109340002.WholeExome.RP-1303.bam 27852548440 BAM aligned CPTAC3 5f43736d-d36e-411d-994d-9f9b34b32470 b1b5258209d9e533ce573136cdd36b20 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02118.WXS.N.hg38 C3L-02118 PDA WXS blood_normal CPT0109340002 ee262e1d-0560-4720-9270-41ed676d887b_wxs_gdc_realn.bam 37443559906 BAM harmonized CPTAC3 ca828a78-e361-42c7-ab37-b394a4ff7d34 b06d234aee85f2a93225e9a6b3bec567 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02118.WXS.T C3L-02118 PDA WXS tumor CPT0109300010_1 CPT0109300010_1.WholeExome.RP-1303.bam 37277055816 BAM aligned CPTAC3 fc8b3a09-7c00-423b-a51b-92864f739586 359d6ab726cd2dbce28a8f674abc169c {"aliquot_tag": "ALQ_f3baa7e2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.WXS.T C3L-02118 PDA WXS tumor CPT0109300010 CPT0109300010.WholeExome.RP-1303.bam 20959585729 BAM aligned CPTAC3 93310813-8e7b-4e29-b2ef-c2fb69948d7f d1a64d9fc26df6282256f35d25634268 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.WXS.T.hg38 C3L-02118 PDA WXS tumor CPT0109300010_1 c074f11c-7f29-462e-a800-82ffc1cb8ca2_wxs_gdc_realn.bam 51642895017 BAM harmonized CPTAC3 248d6a11-0789-45dc-8ac6-f352b41f4883 2d764c1bcbd63bbbb58bdcd90ecec5f9 {"aliquot_tag": "ALQ_f3baa7e2", "gdc_sample_type": "Primary Tumor"} -C3L-02118.WXS.T.hg38 C3L-02118 PDA WXS tumor CPT0109300010 bdad17b5-f936-4294-82f1-a0d922da7fcc_wxs_gdc_realn.bam 28993875884 BAM harmonized CPTAC3 9a7e13c4-8cdf-4867-8dbe-ab939c4ef8dc 197ae03f36b5cabb6a78714482f95b5b {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor"} -C3L-02119.MethArray.Green.T C3L-02119 UCEC Methylation_Array tumor CPT0114340009 203281980233_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 cdeea995-aad5-4591-bc96-a8f04168e77d 8eefa5ba6d87e3c75603853786e37763 {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor"} -C3L-02119.MethArray.Red.T C3L-02119 UCEC Methylation_Array tumor CPT0114340009 203281980233_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 417ee91e-518b-4a81-846e-218a5a731ab6 6dd4990a31ce09c49a474f8c128fe3ce {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor"} -C3L-02119.miRNA-Seq.S24_L002_R1.T C3L-02119 UCEC miRNA-Seq tumor CPT0114340006 190108_UNC31-K00269_0176_AHYGLVBBXX_GGTAGC_S24_L002_R1_001.unaln.bam 303658243 BAM S24_L002_R1 unaligned CPTAC3 4a9f0068-655c-4132-bf94-b492eaa66d96 d37c059867da517d4c9b99360953a369 {"aliquot_tag": "ALQ_ad2e1e58", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02119.miRNA-Seq.T.hg38 C3L-02119 UCEC miRNA-Seq tumor CPT0114340006 883fcdb5-a7b1-4d87-9cf9-6a6a70f913c0_mirnaseq_gdc_realn.bam 324630427 BAM harmonized CPTAC3 8c70855c-ab1c-41ce-a7d5-fd3e5e8d8248 afb28eb1dcdc01e3d3af0281083d158e {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.chimeric.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.chimeric.gdc_realn.bam 32481170 BAM chimeric harmonized CPTAC3 0a2f23b1-21ef-477f-8dfe-38683848bdb0 388499b7fc9ba248c397f9ec663d0cf1 {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.chimeric.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.chimeric.gdc_realn.bam 142348899 BAM chimeric harmonized CPTAC3 3e56bfa8-ddc4-4e92-bd0f-e3c4b686bf78 5c6340439d79c69fd03ec7a430b21ec1 {"aliquot_tag": "ALQ_132f92f3", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.genomic.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.genomic.gdc_realn.bam 10805924998 BAM genomic harmonized CPTAC3 8bd2e211-4269-4a71-8d77-d6e5fed8796b 14d6f610961be95980d251cfbf9f94d1 {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.genomic.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.genomic.gdc_realn.bam 8430924443 BAM genomic harmonized CPTAC3 a9482e2d-d147-4cc3-9f2e-6db867eb3385 7991c4bac11d92fd3a4a94691b9fb254 {"aliquot_tag": "ALQ_132f92f3", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.S20_L005_R1.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 4545023323 FASTQ S20_L005_R1 unaligned CPTAC3 256c5657-c1a4-4d03-bc9e-74efb01b5dd0 c73d1247929f7d1a290420ededbfc0dc {"aliquot_tag": "ALQ_ad2e1e58", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.S20_L005_R2.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4917687906 FASTQ S20_L005_R2 unaligned CPTAC3 60f04f66-07de-40a8-9215-0b8937336e38 71e9abce8a7a073347c293afa7e67a47 {"aliquot_tag": "ALQ_ad2e1e58", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.S86_R1.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R1_001.fastq.gz 5017337379 FASTQ S86_R1 unaligned CPTAC3 d5501f0a-89f0-429e-89f8-2ccbf21fed06 ec38de04c390a9f697c4cc76623e5f72 {"aliquot_tag": "ALQ_132f92f3", "sample": "S86", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.S86_R2.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R2_001.fastq.gz 5174843340 FASTQ S86_R2 unaligned CPTAC3 e4c3ed17-b6a9-4027-bdee-ba9826c6582d bc9d4a5d29ddace54c2f567f7add5066 {"aliquot_tag": "ALQ_132f92f3", "sample": "S86", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.transcriptome.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.transcriptome.gdc_realn.bam 11767625488 BAM transcriptome harmonized CPTAC3 a9e79415-63cb-47b7-8c11-c26d97e627a2 b2b1c1d266f607273680a919cfd20a63 {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor"} -C3L-02119.RNA-Seq.transcriptome.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.transcriptome.gdc_realn.bam 6447553665 BAM transcriptome harmonized CPTAC3 64726da3-9ffe-4981-a08d-76f851eaa93f c29d9bfcba84629d8ef59de84ba21411 {"aliquot_tag": "ALQ_132f92f3", "gdc_sample_type": "Primary Tumor"} -C3L-02119.WGS.N C3L-02119 UCEC WGS blood_normal CPT0116070002 CPT0116070002.WholeGenome.RP-1303.bam 55338054810 BAM aligned CPTAC3 99d1c0ff-a64d-4b13-8134-8fa535ca6963 d8f4d91cef357bc191167881418093da {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal"} -C3L-02119.WGS.N.hg38 C3L-02119 UCEC WGS blood_normal CPT0116070002 8858dc7e-092e-4403-85cd-3caf6919cb3f_wgs_gdc_realn.bam 79047960040 BAM harmonized CPTAC3 4c124cde-0a02-4f6c-bab2-0094dd44a24a 85b525d7c5dc6094b0b0a36047dd948d {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal"} -C3L-02119.WGS.T C3L-02119 UCEC WGS tumor CPT0114340009 CPT0114340009.WholeGenome.RP-1303.bam 56933733093 BAM aligned CPTAC3 f4d9e5f6-42f6-4493-b334-c0c8c72d6d72 fec2e3e0b44f3fb51e7a5d79c1e3a1c8 {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor"} -C3L-02119.WGS.T.hg38 C3L-02119 UCEC WGS tumor CPT0114340009 7ddb8194-33fe-4321-8c12-7388f7a9cf23_wgs_gdc_realn.bam 84448628487 BAM harmonized CPTAC3 2930bc20-95cd-4ecc-b917-ce2819d812d4 dfededd1f452784d81cba5be6b67101c {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor"} -C3L-02119.WXS.N C3L-02119 UCEC WXS blood_normal CPT0116070002 CPT0116070002.WholeExome.RP-1303.bam 23726468802 BAM aligned CPTAC3 561f25e9-4c3b-4ab4-a273-eccde8ed0ffa 371bad299f23315a69666276569f690f {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal"} -C3L-02119.WXS.N.hg38 C3L-02119 UCEC WXS blood_normal CPT0116070002 8858dc7e-092e-4403-85cd-3caf6919cb3f_wxs_gdc_realn.bam 32551996573 BAM harmonized CPTAC3 2520e95b-6d19-4a37-bce3-6c71043ab9d8 85c18ab087ecd11a7feb151f36b40d44 {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal"} -C3L-02119.WXS.T C3L-02119 UCEC WXS tumor CPT0114340009 CPT0114340009.WholeExome.RP-1303.bam 27351585875 BAM aligned CPTAC3 d9110074-0397-4fd4-9332-e5d4a0354754 f37634e050e21fbf0ffeafd2a5369378 {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor"} -C3L-02119.WXS.T.hg38 C3L-02119 UCEC WXS tumor CPT0114340009 7ddb8194-33fe-4321-8c12-7388f7a9cf23_wxs_gdc_realn.bam 38116818168 BAM harmonized CPTAC3 e7a20128-409f-4612-8cf4-c5186c84fa71 eea9ef2a9a3a3ea51907892bee76c55c {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor"} -C3L-02121.MethArray.Green.T C3L-02121 UCEC Methylation_Array tumor CPT0114100009 203220070151_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7d1ca296-b80c-4f2b-8e3f-722934ac6f81 000af280ff115a742693e304c091e0e7 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor"} -C3L-02121.MethArray.Red.T C3L-02121 UCEC Methylation_Array tumor CPT0114100009 203220070151_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 dfe3d3c6-1057-4e96-9a72-207039a07eb0 29a8dd64b1d71edeb1954de7702653dd {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor"} -C3L-02121.miRNA-Seq.A.hg38 C3L-02121 UCEC miRNA-Seq tissue_normal CPT0114180009 94495c31-1e3d-4656-8ee6-34e3334c9c3c_mirnaseq_gdc_realn.bam 227078076 BAM harmonized CPTAC3 a0f92b84-d15e-4e47-a0b2-2dca706145b2 1aa8738269defbb25741e9b338271955 {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.miRNA-Seq.S10_L004_R1.A C3L-02121 UCEC miRNA-Seq tissue_normal CPT0114180009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L004_R1_001.unaln.bam 197300627 BAM S10_L004_R1 unaligned CPTAC3 55d6eb31-32b5-44f5-bbe4-5997678571ab fe11aee6aa4256fdf16f2a700c804ae8 {"aliquot_tag": "ALQ_b5a94fc3", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.miRNA-Seq.S23_L002_R1.T C3L-02121 UCEC miRNA-Seq tumor CPT0114100006 190108_UNC31-K00269_0176_AHYGLVBBXX_GAGTGG_S23_L002_R1_001.unaln.bam 178952739 BAM S23_L002_R1 unaligned CPTAC3 f634478d-79c5-4130-acfb-8a302283441b 0c791ab7ea5ec9d5f446685856708fb6 {"aliquot_tag": "ALQ_15661993", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02121.miRNA-Seq.T.hg38 C3L-02121 UCEC miRNA-Seq tumor CPT0114100006 8c916da0-b0b2-411f-8af1-54528a63df57_mirnaseq_gdc_realn.bam 192618105 BAM harmonized CPTAC3 21ee99dc-29e2-4e59-a7aa-2ab441c9277b f9d45fed1ec76a89b1fccf045873e885 {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.chimeric.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.chimeric.gdc_realn.bam 46578017 BAM chimeric harmonized CPTAC3 fa3e554c-e843-431f-89d1-9bba674ed6e9 0b6906a66bf493c491641dc98690ce36 {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.RNA-Seq.chimeric.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.chimeric.gdc_realn.bam 29152732 BAM chimeric harmonized CPTAC3 4b5e42ca-fec3-48f1-8963-79c267b0718d 7cc75f90ae67a8240a58c3f07ba58c86 {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.chimeric.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.chimeric.gdc_realn.bam 131883766 BAM chimeric harmonized CPTAC3 db1173d7-38dd-4db7-8f81-454a0e27e26d d36b65d7e1b4df182206fb25e0fd402e {"aliquot_tag": "ALQ_b662a580", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.genomic.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.genomic.gdc_realn.bam 7784515531 BAM genomic harmonized CPTAC3 c3902643-b7bc-4409-9984-091c9558fccd 1586bc3c4542a6220129c53b6c1d5cab {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.RNA-Seq.genomic.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.genomic.gdc_realn.bam 9689659409 BAM genomic harmonized CPTAC3 e409ad0e-5b72-4944-b641-c0c6eba89139 339539aa4782f341a60b10380d4abe0d {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.genomic.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.genomic.gdc_realn.bam 6504198618 BAM genomic harmonized CPTAC3 1e1622cc-8426-4d8e-9a8a-c1ce6276ff5a dc2b427bc595cf05e0569c6366df3370 {"aliquot_tag": "ALQ_b662a580", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.S17_L005_R1.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4396825485 FASTQ S17_L005_R1 unaligned CPTAC3 d68f2587-ca3d-41ee-a28c-2b610806cea3 f55a8cda5db37c047981477174d969aa {"aliquot_tag": "ALQ_15661993", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.S17_L005_R2.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 4689841555 FASTQ S17_L005_R2 unaligned CPTAC3 0ab21403-3cac-4604-b86d-2b019f06a40c de14ccaf184ea56adb6754e962645f59 {"aliquot_tag": "ALQ_15661993", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.S3_L001_R1.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3575278323 FASTQ S3_L001_R1 unaligned CPTAC3 cb0e2dc0-8870-47c4-9aeb-b8bbed4415bf 16542ddc0f57ad063219719083ccca70 {"aliquot_tag": "ALQ_b5a94fc3", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.RNA-Seq.S3_L001_R2.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3847646986 FASTQ S3_L001_R2 unaligned CPTAC3 81259fe6-e7b3-450f-9ee5-fd32787426dd ac73954dedf12f00b2aa4de2b8700c47 {"aliquot_tag": "ALQ_b5a94fc3", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.RNA-Seq.S45_R1.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R1_001.fastq.gz 4233986735 FASTQ S45_R1 unaligned CPTAC3 87fd6962-8658-47a8-929b-e49996ac2b9a 19a1c8ff68109662578b3120962d88e9 {"aliquot_tag": "ALQ_b662a580", "sample": "S45", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.S45_R2.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R2_001.fastq.gz 4420810011 FASTQ S45_R2 unaligned CPTAC3 9743d6b6-48f6-45cb-b6e1-a371a74c3b95 7b27b8b1d4208399cb2b5cadbdcdb0ff {"aliquot_tag": "ALQ_b662a580", "sample": "S45", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.transcriptome.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.transcriptome.gdc_realn.bam 10891459186 BAM transcriptome harmonized CPTAC3 bd98b851-da00-42d3-8066-90134c8fa293 a35923329252f59b6505dc564d6d5aa9 {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.RNA-Seq.transcriptome.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.transcriptome.gdc_realn.bam 12627985794 BAM transcriptome harmonized CPTAC3 1da0748d-feb1-4a24-85c3-33ec4e18ec45 67fb4556596dfbe1c08ff8170f833f2d {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor"} -C3L-02121.RNA-Seq.transcriptome.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.transcriptome.gdc_realn.bam 4866177581 BAM transcriptome harmonized CPTAC3 169c3ac4-42ab-4916-83ea-6ff1dc2dac31 e779630312fcede9217580ff90e2fd7e {"aliquot_tag": "ALQ_b662a580", "gdc_sample_type": "Primary Tumor"} -C3L-02121.WGS.A C3L-02121 UCEC WGS tissue_normal CPT0114180006 CPT0114180006.WholeGenome.RP-1303.bam 60069332148 BAM aligned CPTAC3 d81df8f4-b649-44ff-a403-8f42241d6b84 06403672f2f43e22f11825a7de394c37 {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.WGS.A.hg38 C3L-02121 UCEC WGS tissue_normal CPT0114180006 a1d530af-8ad8-4c00-b483-1d3f8b71465e_wgs_gdc_realn.bam 88868521307 BAM harmonized CPTAC3 e9ff7aae-1009-4158-869d-06615ccac09c c1c7308970b8fbcf381045ae80e9a47f {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.WGS.N C3L-02121 UCEC WGS blood_normal CPT0116060002 CPT0116060002.WholeGenome.RP-1303.bam 59258106616 BAM aligned CPTAC3 51b62346-cdba-45e2-af64-ae3eb31bc8c1 126bd7247e481b594c99957261e1f173 {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02121.WGS.N.hg38 C3L-02121 UCEC WGS blood_normal CPT0116060002 35ab08b8-2bd6-4d4c-9c49-5dba075be8a7_wgs_gdc_realn.bam 86900531069 BAM harmonized CPTAC3 5e779a0b-cff6-473e-b153-900b1ca70e7e 730d25cb8de068bbad83504ff8a6e050 {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02121.WGS.T C3L-02121 UCEC WGS tumor CPT0114100009 CPT0114100009.WholeGenome.RP-1303.bam 51826373313 BAM aligned CPTAC3 0322c5dc-cc74-4707-b8cb-4d1a5d34fc64 e6842968ec9006a7c60a0e768239bde0 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor"} -C3L-02121.WGS.T.hg38 C3L-02121 UCEC WGS tumor CPT0114100009 97676e1b-baf7-4ce8-a31c-85f48297f123_wgs_gdc_realn.bam 76382345939 BAM harmonized CPTAC3 92637f7f-aec4-421b-a39d-b6cf62f11aee 03c01efdba30b779ab1a1810b7fa3b84 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor"} -C3L-02121.WXS.A C3L-02121 UCEC WXS tissue_normal CPT0114180006 CPT0114180006.WholeExome.RP-1303.bam 22577521495 BAM aligned CPTAC3 93fd08af-b452-4ca4-b7a9-3dff28b6a278 4aee05941c30ec3d672cbd99529737af {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.WXS.A.hg38 C3L-02121 UCEC WXS tissue_normal CPT0114180006 a1d530af-8ad8-4c00-b483-1d3f8b71465e_wxs_gdc_realn.bam 30609295813 BAM harmonized CPTAC3 7ffd63e3-ef20-4e1a-b0b2-2611bd23cd42 734956bac0d895f306ab7e90e75e66b2 {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02121.WXS.N C3L-02121 UCEC WXS blood_normal CPT0116060002 CPT0116060002.WholeExome.RP-1303.bam 24615364045 BAM aligned CPTAC3 0e1f6439-ddad-4b43-8c65-38c0eed99f87 2ca9e14789e3ec7850141c77086885ab {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02121.WXS.N.hg38 C3L-02121 UCEC WXS blood_normal CPT0116060002 35ab08b8-2bd6-4d4c-9c49-5dba075be8a7_wxs_gdc_realn.bam 32856448171 BAM harmonized CPTAC3 c0d73bdd-c501-4b1b-bfdd-ba2774557350 62e7e78ba98032ec04806838ea849245 {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02121.WXS.T C3L-02121 UCEC WXS tumor CPT0114100009 CPT0114100009.WholeExome.RP-1303.bam 40599308494 BAM aligned CPTAC3 6fdcefaa-f5b3-44e7-b434-31dfd2061f71 be0e59c75350bb85e809f47690481838 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor"} -C3L-02121.WXS.T.hg38 C3L-02121 UCEC WXS tumor CPT0114100009 97676e1b-baf7-4ce8-a31c-85f48297f123_wxs_gdc_realn.bam 57017045966 BAM harmonized CPTAC3 609caaa7-9840-4008-bb43-c1262e27bd2c 34b86f61c8a9114c202b12440f00beb9 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor"} -C3L-02125.MethArray.Green.T C3L-02125 UCEC Methylation_Array tumor CPT0197250006 203561450114_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2373039c-4783-419a-84cc-4440fdae66a6 4e569c00cf70b73fd247f8b97944c6cc {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor"} -C3L-02125.MethArray.Red.T C3L-02125 UCEC Methylation_Array tumor CPT0197250006 203561450114_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 08e6589a-7142-488a-84c0-dfcc279c73aa 45956f84059adf55a94bad35fe332279 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor"} -C3L-02125.miRNA-Seq.S31_L004_R1.T C3L-02125 UCEC miRNA-Seq tumor CPT0197250009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACGAT_S31_L004_R1_001.unaln.bam 215015791 BAM S31_L004_R1 unaligned CPTAC3 5e49d0fb-d7b6-49f3-8d4d-5e53226c15c1 c97e2e34038427b1f4666591f3718732 {"aliquot_tag": "ALQ_29a0f8f4", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02125.miRNA-Seq.T.hg38 C3L-02125 UCEC miRNA-Seq tumor CPT0197250009 e05b7e01-2f91-4830-a8ee-4ad22cc0baae_mirnaseq_gdc_realn.bam 238701998 BAM harmonized CPTAC3 803fab09-269e-4b67-820d-577064bfcbef 57afcaa01fb4e88f46b6cc904cd7b50c {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.chimeric.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.chimeric.gdc_realn.bam 47822194 BAM chimeric harmonized CPTAC3 693b785a-206c-40d6-a436-418d8c5f1099 e2ec5110169b869592d038b8f4592b3f {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.chimeric.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.chimeric.gdc_realn.bam 296740344 BAM chimeric harmonized CPTAC3 b6a84151-5490-400d-8b67-9206135d947a 992ab392aa4c2975b62631b90e1bc955 {"aliquot_tag": "ALQ_24c72c13", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.genomic.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.genomic.gdc_realn.bam 10416676275 BAM genomic harmonized CPTAC3 368ea975-5e25-4d7e-8b52-643c90f3e699 46d1b3422663e12e08798dba0e9e8c65 {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.genomic.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.genomic.gdc_realn.bam 13784536045 BAM genomic harmonized CPTAC3 cbe0aba0-dfda-4800-8983-6f16badadd2f 7a453741c0314134f53d7e493b5fac35 {"aliquot_tag": "ALQ_24c72c13", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.S10_L003_R1.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R1_001.fastq.gz 4880274619 FASTQ S10_L003_R1 unaligned CPTAC3 efaf4cdf-25d0-4b27-b293-fef28bf1053a b0f5672a8ce70bdd8b714eac32df2cae {"aliquot_tag": "ALQ_29a0f8f4", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.S10_L003_R2.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R2_001.fastq.gz 5667449252 FASTQ S10_L003_R2 unaligned CPTAC3 537d3e81-c180-4152-8499-eb54a0832699 9f6dc1614cf4fd143f7d8105cac40b02 {"aliquot_tag": "ALQ_29a0f8f4", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.S31_R1.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R1_001.fastq.gz 8281172775 FASTQ S31_R1 unaligned CPTAC3 d49f0352-6fa8-461c-a6c2-d2544e78436a 9c0a0652482272c6ffa6c7d456873485 {"aliquot_tag": "ALQ_24c72c13", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.S31_R2.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R2_001.fastq.gz 8391356759 FASTQ S31_R2 unaligned CPTAC3 5deb2b3a-1f29-4347-8ed1-932e2b675506 86c97c647b8d2ed1caf83918ecc8eeee {"aliquot_tag": "ALQ_24c72c13", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.transcriptome.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.transcriptome.gdc_realn.bam 13280505478 BAM transcriptome harmonized CPTAC3 22032269-1d84-4c77-b7ae-bfe6aca31278 92bb0ad37790f68aa85863e98dfa614e {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor"} -C3L-02125.RNA-Seq.transcriptome.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.transcriptome.gdc_realn.bam 7668844757 BAM transcriptome harmonized CPTAC3 1a0a349c-9f63-4c86-aca4-2ed56646aa89 7ec6f8711d0b9fd1a45e4f5fb7e73fbb {"aliquot_tag": "ALQ_24c72c13", "gdc_sample_type": "Primary Tumor"} -C3L-02125.WGS.N C3L-02125 UCEC WGS blood_normal CPT0199940002 CPT0199940002.WholeGenome.RP-1303.bam 80092949119 BAM aligned CPTAC3 d54d5504-a551-479e-9aa3-d6149b167f89 b7d5a8e53379e5acb1e52c4f460c0c16 {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal"} -C3L-02125.WGS.N.hg38 C3L-02125 UCEC WGS blood_normal CPT0199940002 4b853998-7ba1-4649-9783-e09a313508c2_wgs_gdc_realn.bam 117834340024 BAM harmonized CPTAC3 9e47245d-af78-4698-a4f6-296f06c099a5 36089f4c3d05b677c0f903aaa42741f3 {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal"} -C3L-02125.WGS.T C3L-02125 UCEC WGS tumor CPT0197250006 CPT0197250006.WholeGenome.RP-1303.bam 60455257706 BAM aligned CPTAC3 b1bd6f6e-c0b5-4219-9871-b988dd54f85e 1d3df0d6556ce512671b1197da2e6e13 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor"} -C3L-02125.WGS.T.hg38 C3L-02125 UCEC WGS tumor CPT0197250006 78aac7c2-2610-4aab-9451-3949fd11a120_wgs_gdc_realn.bam 86696677535 BAM harmonized CPTAC3 12e8ad0c-70f9-4626-96bb-124451c75302 213f36bdaf01a0fb71c0334274afb97b {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor"} -C3L-02125.WXS.N C3L-02125 UCEC WXS blood_normal CPT0199940002 CPT0199940002.WholeExome.RP-1303.bam 26966093780 BAM aligned CPTAC3 4f4b2786-a32f-4e07-a935-6b9ceb9a0c73 e51bca08905ec008165b87ee65465d4c {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal"} -C3L-02125.WXS.N.hg38 C3L-02125 UCEC WXS blood_normal CPT0199940002 4b853998-7ba1-4649-9783-e09a313508c2_wxs_gdc_realn.bam 36506921854 BAM harmonized CPTAC3 6fff8d96-caf5-4bc7-a4d7-fc090baf8bcc 3d4da4476f15af7962bfc7db6aa84e2f {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal"} -C3L-02125.WXS.T C3L-02125 UCEC WXS tumor CPT0197250006 CPT0197250006.WholeExome.RP-1303.bam 23833666598 BAM aligned CPTAC3 2161e56a-4993-4a79-8018-9654a653ebcb 645848e780f77ea66d24afe2496c4148 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor"} -C3L-02125.WXS.T.hg38 C3L-02125 UCEC WXS tumor CPT0197250006 78aac7c2-2610-4aab-9451-3949fd11a120_wxs_gdc_realn.bam 32929063394 BAM harmonized CPTAC3 789bdc1b-c5f2-45a1-a8d6-ae3798faf717 c16e3b202012f74700fad1bea830fe13 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor"} -C3L-02127.MethArray.Green.A C3L-02127 LSCC Methylation_Array tissue_normal CPT0130310006 203219650098_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f118df5f-8943-477b-8041-550c0eef65ce bb5673d1cdc4bf56167396a032a98551 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.MethArray.Green.T C3L-02127 LSCC Methylation_Array tumor CPT0130270009 203219650003_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a51f8246-5771-4c72-9181-80a545b740bf f663f5abfb38319ac8beea9b4e3fc712 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor"} -C3L-02127.MethArray.Red.A C3L-02127 LSCC Methylation_Array tissue_normal CPT0130310006 203219650098_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 f4b8c798-5828-4feb-863d-955c2d35c0ea 08af5beda97e62481678dafe4062d062 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.MethArray.Red.T C3L-02127 LSCC Methylation_Array tumor CPT0130270009 203219650003_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 b8f6bb7a-2e68-45b1-8dc6-875af1f5c085 3dc6bbf68f1bf31dc90c8928a53c2b46 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor"} -C3L-02127.miRNA-Seq.A.hg38 C3L-02127 LSCC miRNA-Seq tissue_normal CPT0130310009 672fd801-e521-4197-891a-b37af728d01c_mirnaseq_gdc_realn.bam 262596817 BAM harmonized CPTAC3 62df9d51-9776-410c-bfe0-19d041ef0a1c fd9e96d167045bb1f44b026ed94dcc10 {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.miRNA-Seq.S17_L001_R1.T C3L-02127 LSCC miRNA-Seq tumor CPT0130270006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTAGAG_S17_L001_R1_001.unaln.bam 202632741 BAM S17_L001_R1 unaligned CPTAC3 c02682f7-bea9-4544-ae4e-f1c46dace82a 034101fd97eaaaa7c79c4ee7ca982bb1 {"aliquot_tag": "ALQ_97b89443", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02127.miRNA-Seq.S29_L002_R1.A C3L-02127 LSCC miRNA-Seq tissue_normal CPT0130310009 181219_UNC31-K00269_0173_BHYGJJBBXX_CACCGG_S29_L002_R1_001.unaln.bam 235476047 BAM S29_L002_R1 unaligned CPTAC3 20153ffd-d532-457b-9806-18509d671c6f 21ef4df3858728c506a5afe179720baf {"aliquot_tag": "ALQ_431bafd7", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.miRNA-Seq.T.hg38 C3L-02127 LSCC miRNA-Seq tumor CPT0130270006 dac911b3-3edb-4ae9-aebf-36d40ebdcfb9_mirnaseq_gdc_realn.bam 221405100 BAM harmonized CPTAC3 28c2dde0-6117-4c4c-8358-000b1453a5b6 1e64e821b9b96295e8c5178d9a7dca33 {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor"} -C3L-02127.RNA-Seq.chimeric.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.chimeric.gdc_realn.bam 26162229 BAM chimeric harmonized CPTAC3 43465a87-dd53-4f82-ab90-ff6ef778f4e3 ead47cefa2ab7869b23578dab396026c {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.RNA-Seq.chimeric.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.chimeric.gdc_realn.bam 20578482 BAM chimeric harmonized CPTAC3 071586bd-1ba2-430b-b07b-f988b9eab9dd 2a868e87bec8847209d03d3c3ccdce38 {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor"} -C3L-02127.RNA-Seq.genomic.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.genomic.gdc_realn.bam 8839599012 BAM genomic harmonized CPTAC3 62d5f993-c87f-47de-b9d9-54d703c81a8e bb4e84c92357daeac8fd32948b350e57 {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.RNA-Seq.genomic.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.genomic.gdc_realn.bam 7085279116 BAM genomic harmonized CPTAC3 c5ee1831-e077-4d65-9e00-eddde81b73de 2d77b51128124311e138b89796228baa {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor"} -C3L-02127.RNA-Seq.S14_L004_R1.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 3915032456 FASTQ S14_L004_R1 unaligned CPTAC3 9957ff37-0881-44a5-892b-fa8d3697c021 f81cafcd1265a952a187a3aa1bd00603 {"aliquot_tag": "ALQ_431bafd7", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.RNA-Seq.S14_L004_R2.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4181211727 FASTQ S14_L004_R2 unaligned CPTAC3 3dce36d1-1b06-44c0-b873-f03f20211de0 70c7f63e79acc3567f92d4a2ad098b24 {"aliquot_tag": "ALQ_431bafd7", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.RNA-Seq.S3_L001_R1.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 2841702805 FASTQ S3_L001_R1 unaligned CPTAC3 c4b9fd5d-3909-4c12-8990-cb87061b1380 246739eed48663e1fb88b87e25d9cc8f {"aliquot_tag": "ALQ_97b89443", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02127.RNA-Seq.S3_L001_R2.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 3041525879 FASTQ S3_L001_R2 unaligned CPTAC3 8176ddcf-aac5-40dc-a77d-03995569d300 612f44b23bffd4ac71f50511850f78cf {"aliquot_tag": "ALQ_97b89443", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02127.RNA-Seq.transcriptome.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.transcriptome.gdc_realn.bam 10178772733 BAM transcriptome harmonized CPTAC3 b8703f9e-a2d3-4131-9c10-708646528456 29ecf90d9393628c175297f627aec911 {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.RNA-Seq.transcriptome.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.transcriptome.gdc_realn.bam 7398487412 BAM transcriptome harmonized CPTAC3 aa82d367-9bef-4d02-a2ba-4659524224e6 56d54a65171faa15b20ae20c0c41d83c {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor"} -C3L-02127.WGS.A C3L-02127 LSCC WGS tissue_normal CPT0130310006 CPT0130310006.WholeGenome.RP-1303.bam 72236691527 BAM aligned CPTAC3 75d1e423-c026-4b55-a8e5-191dd56b007b 1300743801c878e629c9d635b0871668 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.WGS.A.hg38 C3L-02127 LSCC WGS tissue_normal CPT0130310006 ad26fa70-8b09-48f7-bb6b-df942821f368_wgs_gdc_realn.bam 105012116107 BAM harmonized CPTAC3 22c40f7a-50a2-4bbf-817c-292f69b9d0f5 898d9a076eb7ebedc74b1ee04cc0ef73 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.WGS.N C3L-02127 LSCC WGS blood_normal CPT0130390002 CPT0130390002.WholeGenome.RP-1303.bam 56341457869 BAM aligned CPTAC3 671d8e8f-9210-45a6-93e4-86c55a3419c0 8d89a3d8352fc2b0e293705e5e8e2f1c {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02127.WGS.N.hg38 C3L-02127 LSCC WGS blood_normal CPT0130390002 5e39c390-85ac-4582-9f12-a6792994fc69_wgs_gdc_realn.bam 81925801403 BAM harmonized CPTAC3 caa9bd32-438d-4827-9835-351c908f2e9e a959f628da8203165cc2bdacf0a1b3c0 {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02127.WGS.T C3L-02127 LSCC WGS tumor CPT0130270009 CPT0130270009.WholeGenome.RP-1303.bam 59874928258 BAM aligned CPTAC3 7e7f69a0-e645-416f-9021-883149d8ead3 0873c23ebf70cc0bc8efd5c961e77f3d {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor"} -C3L-02127.WGS.T.hg38 C3L-02127 LSCC WGS tumor CPT0130270009 735d360a-8d51-45b9-817e-d97c12e86c0a_wgs_gdc_realn.bam 87027711471 BAM harmonized CPTAC3 95577ed9-ef52-4e17-aaf4-61d940480231 f113866a6630c0c95376b569a7de9396 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor"} -C3L-02127.WXS.A C3L-02127 LSCC WXS tissue_normal CPT0130310006 CPT0130310006.WholeExome.RP-1303.bam 25980309286 BAM aligned CPTAC3 aefbd553-d968-4477-9310-c7a08c5b360d 00be24ed73da21316ed0df9a2f5b58ee {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.WXS.A.hg38 C3L-02127 LSCC WXS tissue_normal CPT0130310006 ad26fa70-8b09-48f7-bb6b-df942821f368_wxs_gdc_realn.bam 35034813962 BAM harmonized CPTAC3 618028bc-272c-484b-bc85-0d3321ec3feb 572d36a98b41ca046b79ef9a7c1459ea {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02127.WXS.N C3L-02127 LSCC WXS blood_normal CPT0130390002 CPT0130390002.WholeExome.RP-1303.bam 26454152238 BAM aligned CPTAC3 7d47fd62-d45c-43f0-b58b-c522f8d91296 1bdcb909e6755f749833c7a4365b7785 {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02127.WXS.N.hg38 C3L-02127 LSCC WXS blood_normal CPT0130390002 5e39c390-85ac-4582-9f12-a6792994fc69_wxs_gdc_realn.bam 36129229246 BAM harmonized CPTAC3 e51e79c4-6465-4d37-834a-06eb40ebcfdc e63ea659fce854892917438bcb69163e {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02127.WXS.T C3L-02127 LSCC WXS tumor CPT0130270009 CPT0130270009.WholeExome.RP-1303.bam 32357133262 BAM aligned CPTAC3 d00b7dc0-8dbd-4595-a0d4-59f5970255a1 b2665a8a6fa8fd58295b4e0abc5b0031 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor"} -C3L-02127.WXS.T.hg38 C3L-02127 LSCC WXS tumor CPT0130270009 735d360a-8d51-45b9-817e-d97c12e86c0a_wxs_gdc_realn.bam 44656383085 BAM harmonized CPTAC3 c464bc7c-0990-477d-8ad0-c18fce5e8b70 6eeba310543f33b53deb706bc783b5f2 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor"} -C3L-02129.MethArray.Green.T C3L-02129 LUAD Methylation_Array tumor CPT0130170012 203219650157_R04C01_Grn.idat 13676222 IDAT Green NA CPTAC3 4e8245fb-5cf3-44a1-86bc-20c4b59089c1 f31953a1e14b9be082744019653f4f20 {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor"} -C3L-02129.MethArray.Red.T C3L-02129 LUAD Methylation_Array tumor CPT0130170012 203219650157_R04C01_Red.idat 13676222 IDAT Red NA CPTAC3 662ab00c-0426-4daa-9a7e-ad7ead3d93a7 d7b5f380528a9fb19f1f5ccae64bf60f {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor"} -C3L-02129.miRNA-Seq.S28_L002_R1.T C3L-02129 LUAD miRNA-Seq tumor CPT0130170015 190813_UNC32-K00270_0196_AH5MCWBBXY_TAATCG_S28_L002_R1_001.unaln.bam 239292413 BAM S28_L002_R1 unaligned CPTAC3 5950b9a6-c7df-494e-b031-f75dff85f9a5 cb55ded7b4ba0cc98eee866236513c76 {"aliquot_tag": "ALQ_913e8616", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02129.miRNA-Seq.T.hg38 C3L-02129 LUAD miRNA-Seq tumor CPT0130170015 1864c1c4-11a4-4d0d-bc0d-7c28a5c2a5b7_mirnaseq_gdc_realn.bam 266404864 BAM harmonized CPTAC3 86d5089b-c255-4ba5-9f2f-f7a604809482 29b4028e213817fd211e53d19f57a129 {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor"} -C3L-02129.RNA-Seq.chimeric.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.chimeric.gdc_realn.bam 41050560 BAM chimeric harmonized CPTAC3 79945f22-80e2-4896-968f-1bf91a7b9e16 29989a6380e74bcfe23ad4e3b5e73abb {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor"} -C3L-02129.RNA-Seq.genomic.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.genomic.gdc_realn.bam 9236441100 BAM genomic harmonized CPTAC3 0b84726f-a0e9-4ae9-bd36-ace5e5c06970 915ff99dc2161e2636889e5f37b1cb6d {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor"} -C3L-02129.RNA-Seq.S14_L004_R1.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R1_001.fastq.gz 3661479542 FASTQ S14_L004_R1 unaligned CPTAC3 510fed09-e6bd-4552-9aed-5cdbdd7f3455 b55925418a1d1585339bad8b69d2a08d {"aliquot_tag": "ALQ_913e8616", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02129.RNA-Seq.S14_L004_R2.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R2_001.fastq.gz 3982175347 FASTQ S14_L004_R2 unaligned CPTAC3 08cd008c-0097-41a8-98a9-bcf66204ce25 ac4ccdfefcf1302a13bc7e80d5908c8a {"aliquot_tag": "ALQ_913e8616", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02129.RNA-Seq.transcriptome.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.transcriptome.gdc_realn.bam 8287017486 BAM transcriptome harmonized CPTAC3 f3cf8e8f-6bc2-457e-bb95-1124c6c22ad3 f68def1662a35fc4807d255c94035d35 {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor"} -C3L-02129.WGS.N C3L-02129 LUAD WGS blood_normal CPT0130250002 CPT0130250002.WholeGenome.RP-1303.bam 60585646851 BAM aligned CPTAC3 4902af61-ef23-4fdb-a17c-b3b21ee0f138 e06232534471cb8e3b6a81fc71bc5532 {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02129.WGS.N.hg38 C3L-02129 LUAD WGS blood_normal CPT0130250002 475e3abc-03e4-4447-b6ac-839fc068f5ea_wgs_gdc_realn.bam 87886343876 BAM harmonized CPTAC3 5a1e0a78-70c6-4118-a60c-4ef220ea1e8f fae0dbb491d6a849e635760bc859f14a {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02129.WGS.T C3L-02129 LUAD WGS tumor CPT0130170012 CPT0130170012.WholeGenome.RP-1303.bam 60695904226 BAM aligned CPTAC3 e061ff1a-f063-45c8-b850-d93e17911a58 a798969d5373d395ef56ae5eae595f0b {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor"} -C3L-02129.WGS.T.hg38 C3L-02129 LUAD WGS tumor CPT0130170012 5f10744c-0ae5-4f7e-a3bc-34a201b73375_wgs_gdc_realn.bam 86520391931 BAM harmonized CPTAC3 547fac6d-d3fe-4c63-ba95-8fdb364e5df8 7a8dcf7ebfa9ab596491cd88a23e30bf {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor"} -C3L-02129.WXS.N C3L-02129 LUAD WXS blood_normal CPT0130250002 CPT0130250002.WholeExome.RP-1303.bam 22841936688 BAM aligned CPTAC3 ab2480d9-c3c0-4f0a-afc7-ea6e5b27e541 75f5b9f3d2adaa839109af8adf8f798f {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02129.WXS.N.hg38 C3L-02129 LUAD WXS blood_normal CPT0130250002 475e3abc-03e4-4447-b6ac-839fc068f5ea_wxs_gdc_realn.bam 31165027289 BAM harmonized CPTAC3 d708f0fa-314a-48f6-a20c-60c78c15aa2e 30adb9330d820776ef3c51b71eec8bcf {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02129.WXS.T C3L-02129 LUAD WXS tumor CPT0130170012 CPT0130170012.WholeExome.RP-1303.bam 23429569181 BAM aligned CPTAC3 5f5432a7-e8e8-42d2-99be-6562654b733d ac3235af9096f05c8e175f22799392f4 {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor"} -C3L-02129.WXS.T.hg38 C3L-02129 LUAD WXS tumor CPT0130170012 5f10744c-0ae5-4f7e-a3bc-34a201b73375_wxs_gdc_realn.bam 32314276515 BAM harmonized CPTAC3 55b1ffba-76ba-4e18-9598-3f316509545c 0114a258314158fdeaf7e10faddf4621 {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor"} -C3L-02130.MethArray.Green.A C3L-02130 LSCC Methylation_Array tissue_normal CPT0130070006 203219760081_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bd48f61a-6186-4696-8fac-cb82f268c6d1 3a62ca8d232306e3cf86c89c47358d72 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.MethArray.Green.T C3L-02130 LSCC Methylation_Array tumor CPT0130030009 203219750071_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fff65125-d8e9-443c-9e9d-be7ca60e53f5 63eb0e905163151a2f3f2d3bfbb8faf0 {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor"} -C3L-02130.MethArray.Red.A C3L-02130 LSCC Methylation_Array tissue_normal CPT0130070006 203219760081_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 ec5d1732-9a91-45e0-ad27-a01af32d12af 03a42d6a674fda6b8587eaa5afcec074 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.MethArray.Red.T C3L-02130 LSCC Methylation_Array tumor CPT0130030009 203219750071_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5be2521f-1d01-4930-8763-eaa6b5ff1c8e da01ebf798b0e32e3b68ba6e543c0fab {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor"} -C3L-02130.miRNA-Seq.A.hg38 C3L-02130 LSCC miRNA-Seq tissue_normal CPT0130070009 27b0c0e9-d6c0-470e-820d-af7237efce21_mirnaseq_gdc_realn.bam 300462621 BAM harmonized CPTAC3 cdacca9a-bfe7-4d53-a2b5-d365265436cc bcc74effe7d80a0c98734d938cf6a111 {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.miRNA-Seq.S16_L001_R1.T C3L-02130 LSCC miRNA-Seq tumor CPT0130030006 181219_UNC31-K00269_0173_BHYGJJBBXX_CCGTCC_S16_L001_R1_001.unaln.bam 212302035 BAM S16_L001_R1 unaligned CPTAC3 ee01cb0b-2e9f-40f7-ae6e-07d890fb37ca 713857a55b6852e70c9ebf8e374a31b3 {"aliquot_tag": "ALQ_2ff09388", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02130.miRNA-Seq.S28_L002_R1.A C3L-02130 LSCC miRNA-Seq tissue_normal CPT0130070009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAACTA_S28_L002_R1_001.unaln.bam 269798808 BAM S28_L002_R1 unaligned CPTAC3 0d0528c1-df07-416e-9f3b-207179930332 b18b9d0427e976fd8c1025338e962174 {"aliquot_tag": "ALQ_4acf28d9", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.miRNA-Seq.T.hg38 C3L-02130 LSCC miRNA-Seq tumor CPT0130030006 f8cb59f3-dd72-4bf0-80fb-ace07a0effb5_mirnaseq_gdc_realn.bam 235791142 BAM harmonized CPTAC3 a005c82c-5c0e-42ac-a9c0-e7f4d4f5ccea dbf9f28826e826d813fb0e3259f75ac1 {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor"} -C3L-02130.RNA-Seq.chimeric.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.chimeric.gdc_realn.bam 29322562 BAM chimeric harmonized CPTAC3 5da11f1b-7d3f-461c-9028-d954cc79f25a 9afc3ed2cb39550cb197321a937f53c6 {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.RNA-Seq.chimeric.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.chimeric.gdc_realn.bam 29312648 BAM chimeric harmonized CPTAC3 0acfc0da-14d1-4b7c-9a97-49fea86dae32 e91bdbaec38d9dfc02e63454090cab44 {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor"} -C3L-02130.RNA-Seq.genomic.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.genomic.gdc_realn.bam 8310262144 BAM genomic harmonized CPTAC3 f9e360f3-1aba-47db-a2f1-b447a03d5db4 401d17d04706e7d5add9eb04c4fe5077 {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.RNA-Seq.genomic.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.genomic.gdc_realn.bam 9702220727 BAM genomic harmonized CPTAC3 f28fa833-bd23-43e6-b190-ca214cce44e0 825d4443fec53b06a514f680bf2b331a {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor"} -C3L-02130.RNA-Seq.S15_L004_R1.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 3917047406 FASTQ S15_L004_R1 unaligned CPTAC3 cc1e3364-5b6f-4dc8-be97-3496bf3ba60d 1dd82c9733186e997500088f356cd2e3 {"aliquot_tag": "ALQ_4acf28d9", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.RNA-Seq.S15_L004_R2.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4154778989 FASTQ S15_L004_R2 unaligned CPTAC3 34c7bf3f-2c72-4179-92da-1226ffc50028 d1b94adacee6ce64b64b69a986cbb9e5 {"aliquot_tag": "ALQ_4acf28d9", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.RNA-Seq.S32_L008_R1.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R1_001.fastq.gz 4141732636 FASTQ S32_L008_R1 unaligned CPTAC3 67d963d6-5c15-4837-bfb3-a05ae934c587 e5e76fbe9a5c767816d27c53ececbaa8 {"aliquot_tag": "ALQ_2ff09388", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02130.RNA-Seq.S32_L008_R2.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R2_001.fastq.gz 4449174303 FASTQ S32_L008_R2 unaligned CPTAC3 8633e580-d501-4c45-9e20-46a6251a4934 77bb2c7c9270d7184223667269fc17a3 {"aliquot_tag": "ALQ_2ff09388", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02130.RNA-Seq.transcriptome.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.transcriptome.gdc_realn.bam 10589584400 BAM transcriptome harmonized CPTAC3 bbe8aca1-d32d-4b10-bfbb-ae83e8264021 c3b86d89c2d4aeaa00f0355029feb58a {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.RNA-Seq.transcriptome.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.transcriptome.gdc_realn.bam 12440581893 BAM transcriptome harmonized CPTAC3 b564c588-88a6-484b-b218-4b4af1a121ad cb6d0a9e83c6b1460623e5daf4ebf9a6 {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor"} -C3L-02130.WGS.A C3L-02130 LSCC WGS tissue_normal CPT0130070006 CPT0130070006.WholeGenome.RP-1303.bam 54498950725 BAM aligned CPTAC3 9c4eee78-b063-42e7-996b-a25212cd3512 b77e1d627a5af09aea3041b7560faeec {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.WGS.A.hg38 C3L-02130 LSCC WGS tissue_normal CPT0130070006 5c4867de-abc1-4ab3-8bb5-07733e3b7008_wgs_gdc_realn.bam 79528417690 BAM harmonized CPTAC3 da1049ff-fde1-4fe0-bb79-228b165b09d4 1e8c814b7f5d45c719af3995975ca41d {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.WGS.N C3L-02130 LSCC WGS blood_normal CPT0130150002 CPT0130150002.WholeGenome.RP-1303.bam 54597845065 BAM aligned CPTAC3 72a6b351-35bb-4315-9948-3d928ed4a33e 6f0a7b34ce1d21c32cf4be1554e43a30 {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal"} -C3L-02130.WGS.N.hg38 C3L-02130 LSCC WGS blood_normal CPT0130150002 c742c34f-6323-463f-97b2-8670c2f4e950_wgs_gdc_realn.bam 79570021758 BAM harmonized CPTAC3 8490c690-dac7-4a72-b2bf-1991fbe05c36 ba2bd9342dcb0bd05fcf3536b82094a1 {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal"} -C3L-02130.WGS.T C3L-02130 LSCC WGS tumor CPT0130030009 CPT0130030009.WholeGenome.RP-1303.bam 57445643489 BAM aligned CPTAC3 82f42504-5d7e-43b7-81a2-41fa109eb385 5e5dc73eb4f530a3fb5620e8e012073e {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor"} -C3L-02130.WGS.T.hg38 C3L-02130 LSCC WGS tumor CPT0130030009 d8ab669a-e58a-4f91-8d3a-0ab143c4a2ad_wgs_gdc_realn.bam 84163312700 BAM harmonized CPTAC3 6d9c3c11-0d28-481a-9392-86755de63ad3 fe594a254c078f8395736d3bdec8c550 {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor"} -C3L-02130.WXS.A C3L-02130 LSCC WXS tissue_normal CPT0130070006 CPT0130070006.WholeExome.RP-1303.bam 26173733731 BAM aligned CPTAC3 85fa515f-4aff-43c1-9921-96abafbda279 792d13e65e8ae0987e295e17f6182537 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.WXS.A.hg38 C3L-02130 LSCC WXS tissue_normal CPT0130070006 5c4867de-abc1-4ab3-8bb5-07733e3b7008_wxs_gdc_realn.bam 35778833954 BAM harmonized CPTAC3 6613cf8f-3279-41cf-90b8-63e39e604e8e b5e7a7d73e50ac963573d085950d5857 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02130.WXS.N C3L-02130 LSCC WXS blood_normal CPT0130150002 CPT0130150002.WholeExome.RP-1303.bam 36624186917 BAM aligned CPTAC3 8c5ae47d-97d6-4ed3-bb1d-3f4e93ec7d47 7a92e8622f2c44cf215edb3dc4b6d993 {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal"} -C3L-02130.WXS.N.hg38 C3L-02130 LSCC WXS blood_normal CPT0130150002 c742c34f-6323-463f-97b2-8670c2f4e950_wxs_gdc_realn.bam 49700178986 BAM harmonized CPTAC3 22df6e39-0947-4591-82c0-6be07cbb8dbe e1774ab2078375f560246784eb66798f {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal"} -C3L-02130.WXS.T C3L-02130 LSCC WXS tumor CPT0130030009 CPT0130030009.WholeExome.RP-1303.bam 31273765628 BAM aligned CPTAC3 e931cf02-874a-4512-9f98-dce8dd42575c cf3d4f42fb9c2bf3a68a815c98573680 {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor"} -C3L-02130.WXS.T.hg38 C3L-02130 LSCC WXS tumor CPT0130030009 d8ab669a-e58a-4f91-8d3a-0ab143c4a2ad_wxs_gdc_realn.bam 42913664306 BAM harmonized CPTAC3 a8b8f6dd-6bba-4cb8-9e54-0b994c32c452 a120ebc05f965c43097608a34f7b0d2a {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor"} -C3L-02132.MethArray.Green.Tbm C3L-02132 AML Methylation_Array tumor_bone_marrow CPT0166390002 203561450073_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62489ff6-d3ef-4bdb-acc2-a1d987ae15da 4e8d1d37e8ce444dca822fa2d6d8594e {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.MethArray.Red.Tbm C3L-02132 AML Methylation_Array tumor_bone_marrow CPT0166390002 203561450073_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 f7ed3484-ee2d-46ee-baae-bd5e42634619 f7f9e569ee846cfca04fd5c3d28e5552 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.miRNA-Seq.S23_L001_R1.Tbm C3L-02132 AML miRNA-Seq tumor_bone_marrow CPT0166400002 190508_UNC31-K00269_0215_BH7FYKBBXY_GAGTGG_S23_L001_R1_001.unaln.bam 224626564 BAM S23_L001_R1 unaligned CPTAC3 2c892be2-0f25-4124-9ee4-f9ef0297af38 d9daab35a3ccf3cfcdce146608fb5751 {"aliquot_tag": "ALQ_df9c5409", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.miRNA-Seq.Tbm.hg38 C3L-02132 AML miRNA-Seq tumor_bone_marrow CPT0166400002 045cdf65-de62-454d-82d0-bbde2cb7a8d4_mirnaseq_gdc_realn.bam 248262404 BAM harmonized CPTAC3 0c134d0b-fbb5-475c-80c5-b55d40ed13e5 1c5a97f6c87f7cb0bb3843716ab4e937 {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.RNA-Seq.chimeric.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.chimeric.gdc_realn.bam 36900317 BAM chimeric harmonized CPTAC3 6a489844-6894-47d6-9842-e6b0da252a93 33d46845888a581e2553ce3489fd1333 {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.RNA-Seq.genomic.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.genomic.gdc_realn.bam 9168018809 BAM genomic harmonized CPTAC3 6303ff9d-25bc-4d9e-a114-bd07d7a23a17 fe5e8eb19d566553f92acb7bcbd65105 {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.RNA-Seq.S41_L007_R1.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R1_001.fastq.gz 4402299308 FASTQ S41_L007_R1 unaligned CPTAC3 5ced447e-e845-49a9-b617-bd26a1eae460 28cfccb8e77f6999e2dd9483b3051bfb {"aliquot_tag": "ALQ_df9c5409", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.RNA-Seq.S41_L007_R2.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R2_001.fastq.gz 5022283422 FASTQ S41_L007_R2 unaligned CPTAC3 db5d73c2-53c6-4ba8-9fa4-255cd1a208fd 613bc36426a0db8c25442900d5de07f6 {"aliquot_tag": "ALQ_df9c5409", "sample": "S41", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.RNA-Seq.transcriptome.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.transcriptome.gdc_realn.bam 11649027096 BAM transcriptome harmonized CPTAC3 4b4530ab-b074-45be-b142-8b8e4fa5931f 2c0902c989a9baf16cbcd989c3ecfb5f {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.WGS.Nbc C3L-02132 AML WGS buccal_normal CPT0166490003 CPT0166490003.WholeGenome.RP-1303.bam 66785394922 BAM aligned CPTAC3 a96fd759-37a7-40e6-8d08-ee0663269e50 6a3d0f762b9099132f00a517c2fd1dd6 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02132.WGS.Nbc.hg38 C3L-02132 AML WGS buccal_normal CPT0166490003 baa4fc21-86c9-493d-bf8c-a097720cf807_wgs_gdc_realn.bam 95512500931 BAM harmonized CPTAC3 8daf64b3-8a34-4191-a33e-4b6b6c38592f 565abfdbfa1c7e3db7d685e66a3d3c86 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002_1 CPT0166390002_1.WholeGenome.RP-1303.bam 69862755075 BAM aligned CPTAC3 520e8c0a-2acb-4f74-8f27-2a4fa497a7af 493a63ed96e40162b986c089eb4bee69 {"aliquot_tag": "ALQ_fbdeeac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 CPT0166390002.WholeGenome.RP-1303.bam 26137683857 BAM aligned CPTAC3 37fa043b-64db-419d-8042-713e5097c910 01452d76f9db936e33ba2d56ed65e014 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.WGS.Tbm.hg38 C3L-02132 AML WGS tumor_bone_marrow CPT0166390002_1 3de89c45-6ec1-4509-b9e8-6a3e8d874eac_wgs_gdc_realn.bam 103302272675 BAM harmonized CPTAC3 78c5577f-05e9-46c6-9376-5ee607145665 0c7c44a8f580fa2bc655edd3300fc34f {"aliquot_tag": "ALQ_fbdeeac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.WGS.Tbm.hg38 C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 5ebcb838-b5be-4a97-83ad-ee91f207b385_wgs_gdc_realn.bam 35974705542 BAM harmonized CPTAC3 85d7287e-1a59-4f46-bb72-b244838ff573 b1f45d0b0240723de5c84c101a51eb53 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.WXS.Nbc C3L-02132 AML WXS buccal_normal CPT0166490003 CPT0166490003.WholeExome.RP-1303.bam 25321497026 BAM aligned CPTAC3 2615c697-f758-4edf-96f4-2fd271a22c61 1f388eb31ac56025f506c6ed2f8f4646 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02132.WXS.Nbc.hg38 C3L-02132 AML WXS buccal_normal CPT0166490003 baa4fc21-86c9-493d-bf8c-a097720cf807_wxs_gdc_realn.bam 35166611065 BAM harmonized CPTAC3 944c53f5-4f80-46ae-ac76-fed39b14b783 9bb72d1a9bc4d15b711981a43ce2f859 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02132.WXS.Tbm C3L-02132 AML WXS tumor_bone_marrow CPT0166390002 CPT0166390002.WholeExome.RP-1303.bam 26137683925 BAM aligned CPTAC3 bb0efc8a-b390-4dbe-a702-4db8d43478f1 0697527e15187d152852d71d0e409886 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02132.WXS.Tbm.hg38 C3L-02132 AML WXS tumor_bone_marrow CPT0166390002 5ebcb838-b5be-4a97-83ad-ee91f207b385_wxs_gdc_realn.bam 36002080635 BAM harmonized CPTAC3 1c3ecf5e-2355-4379-9ec4-cd5543003f4d 2ff521ca0a51b85db60d7f85e45c122a {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.MethArray.Green.Tbm C3L-02135 AML Methylation_Array tumor_bone_marrow CPT0200830002 203561450017_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a7db38d2-a69d-4690-8e64-f8e42d233c20 f8bc13d353ba6e8115dd9213f9665533 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.MethArray.Red.Tbm C3L-02135 AML Methylation_Array tumor_bone_marrow CPT0200830002 203561450017_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 3d4a8155-3fd2-467b-9d0e-b1504948450c 18f63d30bf5e3ea7759ff45903fb36ea {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.miRNA-Seq.S28_L002_R1.Tbm C3L-02135 AML miRNA-Seq tumor_bone_marrow CPT0200840002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAAAAG_S28_L002_R1_001.unaln.bam 265210622 BAM S28_L002_R1 unaligned CPTAC3 8e435e18-48b5-4be8-ae7a-3fe71929f2da 4c4d0ffd87c619dc37bf9dc67cef1e8d {"aliquot_tag": "ALQ_c1ec32ca", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.miRNA-Seq.Tbm.hg38 C3L-02135 AML miRNA-Seq tumor_bone_marrow CPT0200840002 5696161b-eaec-4e97-a553-948c4fb8d473_mirnaseq_gdc_realn.bam 312092119 BAM harmonized CPTAC3 956d66e6-9f62-4b41-8ce8-7ded3d9ae533 2ba7a461f38a0236985a70634589f7de {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.RNA-Seq.chimeric.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.chimeric.gdc_realn.bam 44753755 BAM chimeric harmonized CPTAC3 0de4f969-05fb-4d58-9f97-c1b13277bb91 74ccdf46c1e0f0d0ddc703c210bb62db {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.RNA-Seq.genomic.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.genomic.gdc_realn.bam 8732647369 BAM genomic harmonized CPTAC3 85c82043-3285-4421-a2e9-0c309feb7f12 c3550b820bed2d57016bcad71e0064cb {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.RNA-Seq.S22_L006_R1.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R1_001.fastq.gz 4158410268 FASTQ S22_L006_R1 unaligned CPTAC3 fec039da-21f5-4b68-8a65-3859f6aca7ca bcba513e38c12af9e7238b12a615b4f5 {"aliquot_tag": "ALQ_c1ec32ca", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.RNA-Seq.S22_L006_R2.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R2_001.fastq.gz 4847420316 FASTQ S22_L006_R2 unaligned CPTAC3 abe55041-2ae7-40eb-8ccc-6c5a2cae51fb 25d1836e59cbde273cd6ef4a84173134 {"aliquot_tag": "ALQ_c1ec32ca", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.RNA-Seq.transcriptome.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.transcriptome.gdc_realn.bam 8344014008 BAM transcriptome harmonized CPTAC3 562f922d-27c1-4244-a53a-227169975312 ea59404f44bbfa8190060a639028548c {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.WGS.Nbc C3L-02135 AML WGS buccal_normal CPT0200930006 CPT0200930006.WholeGenome.RP-1303.bam 94613467073 BAM aligned CPTAC3 17f377a7-202d-4773-b656-0948e15ef0ef 5b87130e0db21fe84e2e2c0937facd51 {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02135.WGS.Nbc.hg38 C3L-02135 AML WGS buccal_normal CPT0200930006 a5ec5e8b-c663-4691-aa2d-4a3d1a6f8488_wgs_gdc_realn.bam 136567337787 BAM harmonized CPTAC3 c9d4d913-31bd-4903-9df4-f09fdb1303f4 6f00ae7c51e01c22864d36192f24a89e {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02135.WGS.Tbm C3L-02135 AML WGS tumor_bone_marrow CPT0200830002 CPT0200830002.WholeGenome.RP-1303.bam 85714834242 BAM aligned CPTAC3 6dea8d70-422f-49a2-9c57-4209acc1f5a8 2f1f6fa0e5d4e6ceca83b8bf445c1c13 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.WGS.Tbm.hg38 C3L-02135 AML WGS tumor_bone_marrow CPT0200830002 9a5cd084-731d-474f-9d8d-088af9f0731c_wgs_gdc_realn.bam 125556447074 BAM harmonized CPTAC3 2acdb97f-754a-4cb9-acb6-f113aa9ae369 02a038d23c7a8bd7303ba4653c81bd95 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.WXS.Nbc C3L-02135 AML WXS buccal_normal CPT0200930006 CPT0200930006.WholeExome.RP-1303.bam 31185544566 BAM aligned CPTAC3 3f72103b-68e0-4ed1-9bfb-4ebc00390f1c dd0a6fe3cf4f6e9535dfd6f561048284 {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02135.WXS.Nbc.hg38 C3L-02135 AML WXS buccal_normal CPT0200930006 a5ec5e8b-c663-4691-aa2d-4a3d1a6f8488_wxs_gdc_realn.bam 43153393135 BAM harmonized CPTAC3 b67743e8-1d2b-41c4-8804-cafc31c7dfd4 9f6606398ec4b3995eda4d0135c2e980 {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02135.WXS.Tbm C3L-02135 AML WXS tumor_bone_marrow CPT0200830002 CPT0200830002.WholeExome.RP-1303.bam 24078705991 BAM aligned CPTAC3 94891d00-196e-4c89-860c-150ec13910f2 770a26c3459a145a13670cf9b88a2915 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02135.WXS.Tbm.hg38 C3L-02135 AML WXS tumor_bone_marrow CPT0200830002 9a5cd084-731d-474f-9d8d-088af9f0731c_wxs_gdc_realn.bam 33960767507 BAM harmonized CPTAC3 d81d0a6f-c812-4a35-bff1-4b2a8795d532 9bc5a84b9be0cb0298e8a2a430fa0aee {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.MethArray.Green.Tbm C3L-02136 AML Methylation_Array tumor_bone_marrow CPT0230490001 203561620089_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 8f26f53c-abb2-44bc-8695-a3bde663ab20 9d120527e8e514e4cb67c90e2cec3cef {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.MethArray.Red.Tbm C3L-02136 AML Methylation_Array tumor_bone_marrow CPT0230490001 203561620089_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 da80bfb3-931f-4015-aadd-b09f899c2c0e 64f12eeb9afb7f46db9f11c42149f59e {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.miRNA-Seq.S33_L002_R1.Tbm C3L-02136 AML miRNA-Seq tumor_bone_marrow CPT0230500002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGGCG_S33_L002_R1_001.unaln.bam 197324017 BAM S33_L002_R1 unaligned CPTAC3 f20bbfbf-e033-41b9-b015-62078740293c 175c3d7a69c8644fc5133a781638aad5 {"aliquot_tag": "ALQ_67d8037", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.miRNA-Seq.Tbm.hg38 C3L-02136 AML miRNA-Seq tumor_bone_marrow CPT0230500002 55ef6cd2-cf75-4bbe-b85c-712a7b1f4bd9_mirnaseq_gdc_realn.bam 225196754 BAM harmonized CPTAC3 b64b028a-398c-4272-a69e-5051f3d0158b 2c029d482289578780e8180167657455 {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.RNA-Seq.chimeric.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.chimeric.gdc_realn.bam 37614216 BAM chimeric harmonized CPTAC3 e02a0c20-8dc7-4e03-af3f-fcf74f0623d3 3660800f834f357e6165c11c3a7ba89b {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.RNA-Seq.genomic.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.genomic.gdc_realn.bam 8411859891 BAM genomic harmonized CPTAC3 4b354905-8ac1-4719-8b3b-e993d38650a2 fb06261c2b4604ea95da9c5b86684c99 {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.RNA-Seq.S24_L008_R1.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R1_001.fastq.gz 4055831703 FASTQ S24_L008_R1 unaligned CPTAC3 93909162-a668-410b-8941-d515c441dd77 67534072d9a498cf421c6ac4a0dd3b16 {"aliquot_tag": "ALQ_67d8037", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.RNA-Seq.S24_L008_R2.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R2_001.fastq.gz 4695840850 FASTQ S24_L008_R2 unaligned CPTAC3 b1063253-4dc8-4b9f-8a58-cc0a86a8be4c dd207f5449155ad6033c8f723decd4bb {"aliquot_tag": "ALQ_67d8037", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.RNA-Seq.transcriptome.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.transcriptome.gdc_realn.bam 10174893559 BAM transcriptome harmonized CPTAC3 772f9fad-f617-4ae6-b035-80085f364fe9 61048e65aac0b7113e8c7318a778e1dd {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.WGS.Tbm C3L-02136 AML WGS tumor_bone_marrow CPT0230490001 CPT0230490001.WholeGenome.RP-1303.bam 78296980483 BAM aligned CPTAC3 06e7712c-8d5b-4395-8bae-2b6445a787cd 7e907cbee3666f6e92280ea35f58536e {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.WGS.Tbm.hg38 C3L-02136 AML WGS tumor_bone_marrow CPT0230490001 a91e6365-7948-4ae6-b105-3ce45da83555_wgs_gdc_realn.bam 116860046661 BAM harmonized CPTAC3 e36d8313-abf7-49ae-9960-268a9a234493 6955e077684bf9a5ea8a46ac7cac5770 {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.WXS.Nbc C3L-02136 AML WXS buccal_normal CPT0230590002 CPT0230590002.WholeExome.RP-1303.bam 23615636918 BAM aligned CPTAC3 43ecffb5-d0e0-451a-87c2-dd10438e632f d9231ad9ed08d47347078fe7c1365069 {"aliquot_tag": "ALQ_b6de246", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02136.WXS.Nbc.hg38 C3L-02136 AML WXS buccal_normal CPT0230590002 04809c7c-238b-40b5-a87f-3c37e75545cf_wxs_gdc_realn.bam 33075538427 BAM harmonized CPTAC3 ef54310e-87bb-46f0-b8ba-c029b4be97cc 8197745270131887e4b969f46e4330b8 {"aliquot_tag": "ALQ_b6de246", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02136.WXS.Tbm C3L-02136 AML WXS tumor_bone_marrow CPT0230490001 CPT0230490001.WholeExome.RP-1303.bam 25432740364 BAM aligned CPTAC3 ca7a576f-f5c7-41e5-9adc-54dbf9b3ed71 6f8e75540f6abdea59ab640d1fb51cc9 {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02136.WXS.Tbm.hg38 C3L-02136 AML WXS tumor_bone_marrow CPT0230490001 a91e6365-7948-4ae6-b105-3ce45da83555_wxs_gdc_realn.bam 35381787903 BAM harmonized CPTAC3 fe10d155-2ee0-43e9-ad96-bb770e51f219 928650dc90f4dc9b96e4b49038bd5a7d {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.MethArray.Green.Tbm C3L-02137 AML Methylation_Array tumor_bone_marrow CPT0201080002 203561620153_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 7fe34bf4-f898-4db3-a604-81486a5e5700 dfb8a915f7e9d1bda70754b59a76a220 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.MethArray.Red.Tbm C3L-02137 AML Methylation_Array tumor_bone_marrow CPT0201080002 203561620153_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 df33c0ab-09ab-4ab7-ad53-8e9626e38233 8394d18967769906933914301932d3db {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.miRNA-Seq.S29_L002_R1.Tbm C3L-02137 AML miRNA-Seq tumor_bone_marrow CPT0201090002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAACTA_S29_L002_R1_001.unaln.bam 236898385 BAM S29_L002_R1 unaligned CPTAC3 f1be098d-ae0a-4a1c-adcd-12080da5bc6a 98cfc9d8eb5cd77d45f215c1a4101b89 {"aliquot_tag": "ALQ_73587fa2", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.miRNA-Seq.Tbm.hg38 C3L-02137 AML miRNA-Seq tumor_bone_marrow CPT0201090002 cf87ae14-740d-4064-bf50-e99d12db6189_mirnaseq_gdc_realn.bam 249534340 BAM harmonized CPTAC3 b848bcc2-e071-405f-a7c0-09466578adc9 18d7a8c0dafc4290175acb47c12077d2 {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.RNA-Seq.chimeric.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.chimeric.gdc_realn.bam 37060120 BAM chimeric harmonized CPTAC3 4e2920c4-2bf6-4b58-adb9-34bd9343a317 ce877d5e37e82ed2261f98e76197e30a {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.RNA-Seq.genomic.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.genomic.gdc_realn.bam 8391637479 BAM genomic harmonized CPTAC3 bf3765b6-62c6-4842-9b4a-1294d154e677 d8b0e8015629a0efe85af317c6c72615 {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.RNA-Seq.S2_L007_R1.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R1_001.fastq.gz 3695423280 FASTQ S2_L007_R1 unaligned CPTAC3 ff7ac451-2cf4-4e4a-b9ea-e931703cc80c 4eaaa8f628a3156282c1743ad328a0b3 {"aliquot_tag": "ALQ_73587fa2", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.RNA-Seq.S2_L007_R2.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R2_001.fastq.gz 4055355031 FASTQ S2_L007_R2 unaligned CPTAC3 c21ae1be-157e-4641-8e90-886929f1a59d 63d44be17d68252ca1360ad2965da74a {"aliquot_tag": "ALQ_73587fa2", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.RNA-Seq.transcriptome.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.transcriptome.gdc_realn.bam 11203758229 BAM transcriptome harmonized CPTAC3 09d9e30f-3fb6-42d0-9082-e48b4fbce998 4b2d901b91f99e21da137b021c9e19de {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.WGS.Tbm C3L-02137 AML WGS tumor_bone_marrow CPT0201080002 CPT0201080002.WholeGenome.RP-1303.bam 59522615984 BAM aligned CPTAC3 333ae522-3bcd-4cb5-aff1-71dd16888993 b9d680a917fb112cba2eea0ed1c2a0d9 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.WGS.Tbm.hg38 C3L-02137 AML WGS tumor_bone_marrow CPT0201080002 3ee3c9e8-3e28-4f35-b7d7-d90497a50bdb_wgs_gdc_realn.bam 86778064337 BAM harmonized CPTAC3 085f975e-7081-44d8-ab72-cb1341ba9ee7 525387dfd2088720736ffb15230481b7 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.WXS.Nbc C3L-02137 AML WXS buccal_normal CPT0201120003 CPT0201120003.WholeExome.RP-1303.bam 26684903177 BAM aligned CPTAC3 10583595-74c3-4d4d-867a-eec0337e54bc 2922a2ae9db6de52bdb19f22087cc032 {"aliquot_tag": "ALQ_b8d3ad80", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02137.WXS.Nbc.hg38 C3L-02137 AML WXS buccal_normal CPT0201120003 f9fa6343-7ebe-4ffe-8de1-77a88e06609b_wxs_gdc_realn.bam 36434313363 BAM harmonized CPTAC3 dbc64b57-2e3c-41c5-b4f3-c37d2ea0526c 6de7738cf13378414c8ab2bd2e16f6b8 {"aliquot_tag": "ALQ_b8d3ad80", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02137.WXS.Tbm C3L-02137 AML WXS tumor_bone_marrow CPT0201080002 CPT0201080002.WholeExome.RP-1303.bam 22950235854 BAM aligned CPTAC3 1fd45bae-9812-47c6-ae46-e57ff6309176 031471402d788925104571a157f4ed59 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02137.WXS.Tbm.hg38 C3L-02137 AML WXS tumor_bone_marrow CPT0201080002 3ee3c9e8-3e28-4f35-b7d7-d90497a50bdb_wxs_gdc_realn.bam 32415068495 BAM harmonized CPTAC3 c595f4b2-cd8a-460e-8cc2-524b6c1133b0 659568d6210a84f1dd7b7794d4739a09 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-02163.MethArray.Green.A C3L-02163 LSCC Methylation_Array tissue_normal CPT0175160006 203219650217_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 80ba4c4b-5c08-442c-80ca-721d035e126b 2379fd0ca3a137a71d15b853e0f56a5d {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.MethArray.Green.T C3L-02163 LSCC Methylation_Array tumor CPT0175120006 203219650042_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d04ff12a-4b8c-4aef-9dd8-b60d6d8b4e2f 7648edac9af3e5e42bf41d60605aef6e {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor"} -C3L-02163.MethArray.Red.A C3L-02163 LSCC Methylation_Array tissue_normal CPT0175160006 203219650217_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a0b89978-6bf3-4f66-a14e-aa2fbbce5efe 410778da6e81380331fd53f1920fcb3d {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.MethArray.Red.T C3L-02163 LSCC Methylation_Array tumor CPT0175120006 203219650042_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 a45dc5f9-40df-44dd-820d-6641aedf16a9 f6c295450e391b968c4487a5e817b0cc {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor"} -C3L-02163.miRNA-Seq.A.hg38 C3L-02163 LSCC miRNA-Seq tissue_normal CPT0175160009 c6b5b81d-778d-4067-97f5-dd04fafdd3d6_mirnaseq_gdc_realn.bam 306200260 BAM harmonized CPTAC3 bd94e759-456c-4c22-aa67-2184b4987c63 2c23cea3fb7b6f5eb8f0c8e71d16de18 {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.miRNA-Seq.S14_L003_R1.T C3L-02163 LSCC miRNA-Seq tumor CPT0175120013 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTTCC_S14_L003_R1_001.unaln.bam 271741362 BAM S14_L003_R1 unaligned CPTAC3 74173675-5dbe-4c23-9a2c-5247bda2eb11 3d684a9a1524bcb943536817ef0040cc {"aliquot_tag": "ALQ_66cf8d0e", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02163.miRNA-Seq.S2_L003_R1.A C3L-02163 LSCC miRNA-Seq tissue_normal CPT0175160009 181219_UNC31-K00269_0173_BHYGJJBBXX_CGATGT_S2_L003_R1_001.unaln.bam 273008373 BAM S2_L003_R1 unaligned CPTAC3 4016e10d-1c19-42e7-821e-11fbbab09dcf b059b78ef540ecfbbd96e72da8a02ad5 {"aliquot_tag": "ALQ_6a81f391", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.miRNA-Seq.T.hg38 C3L-02163 LSCC miRNA-Seq tumor CPT0175120013 a380422d-93ef-41cb-9997-6cf86df9e91b_mirnaseq_gdc_realn.bam 307425784 BAM harmonized CPTAC3 0ad3e93e-3fd6-4354-aa7f-071e32ac66e2 3f05cee582b98d6a4f0289cac1f08589 {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor"} -C3L-02163.RNA-Seq.chimeric.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.chimeric.gdc_realn.bam 257206250 BAM chimeric harmonized CPTAC3 ce9159f4-8365-4522-bffd-196f634ea1ec 6ac9939c9ce2fe008d3f36924d44f48d {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.RNA-Seq.chimeric.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.chimeric.gdc_realn.bam 191611105 BAM chimeric harmonized CPTAC3 e5edbb26-f58c-4f7a-9237-d3419f9dcf0c 7389959d029ad21ae850853024d90946 {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor"} -C3L-02163.RNA-Seq.genomic.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.genomic.gdc_realn.bam 9287726953 BAM genomic harmonized CPTAC3 3b32a10e-cf2d-448f-859c-d2e8965d0f4e 0ac72d10078941c8b578748b7fb633ab {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.RNA-Seq.genomic.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.genomic.gdc_realn.bam 8867089698 BAM genomic harmonized CPTAC3 c7cd03e6-ce7a-4510-b2c0-427753fe00b3 6c6052af004092ff2c805e9859b5a2a7 {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor"} -C3L-02163.RNA-Seq.S24_L005_R1.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R1_001.fastq.gz 4308966579 FASTQ S24_L005_R1 unaligned CPTAC3 3978c40c-51ea-4f84-94e7-a6d7f60e9a95 67659cab75c0e85a419c86248d8c8258 {"aliquot_tag": "ALQ_66cf8d0e", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02163.RNA-Seq.S24_L005_R2.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R2_001.fastq.gz 4496269577 FASTQ S24_L005_R2 unaligned CPTAC3 3a1d8ee4-8c8c-410d-8e7a-326284afefb7 3d6d33c909bf7a948a8d876f86bef035 {"aliquot_tag": "ALQ_66cf8d0e", "sample": "S24", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02163.RNA-Seq.S2_L001_R1.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4325631110 FASTQ S2_L001_R1 unaligned CPTAC3 9749e6bc-0bb0-40c9-aec9-faa83eeac92e f78749892d0b5d66e3fac0ee6b629a6f {"aliquot_tag": "ALQ_6a81f391", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.RNA-Seq.S2_L001_R2.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4820026408 FASTQ S2_L001_R2 unaligned CPTAC3 98e55f73-432c-421b-b9b6-10ed1c73806e 96755a9a0730e043a618b62a09ce3eef {"aliquot_tag": "ALQ_6a81f391", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.RNA-Seq.transcriptome.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.transcriptome.gdc_realn.bam 12006645997 BAM transcriptome harmonized CPTAC3 71c3220a-0b5e-423e-af9b-c72914b10ac7 4df542983cde56d5d64b5f321f1bfb9b {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.RNA-Seq.transcriptome.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.transcriptome.gdc_realn.bam 11874627262 BAM transcriptome harmonized CPTAC3 ec6387a8-12d7-4e7a-b4b9-5cdc39641bd3 b9492082a81f1b21f6599c820e40f24c {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor"} -C3L-02163.WGS.A C3L-02163 LSCC WGS tissue_normal CPT0175160006 CPT0175160006.WholeGenome.RP-1303.bam 61915495832 BAM aligned CPTAC3 77257365-8bef-4cf4-8f44-bbcccf5885a6 674dcd51a62964f7c19af9ae74d93d55 {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.WGS.A.hg38 C3L-02163 LSCC WGS tissue_normal CPT0175160006 9715fe8d-bfc1-49ce-8853-64f8fbd52500_wgs_gdc_realn.bam 89736103072 BAM harmonized CPTAC3 18e6fdeb-a177-4af1-8f31-55555d90d95b 39fea8133a05259be4a81312828f1cf3 {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.WGS.N C3L-02163 LSCC WGS blood_normal CPT0175220002 CPT0175220002.WholeGenome.RP-1303.bam 58510770763 BAM aligned CPTAC3 09955940-c9d8-4058-a839-83fd9bcdcc8a ed0ac25f9d7bb2b5918def7ac3fe642b {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal"} -C3L-02163.WGS.N.hg38 C3L-02163 LSCC WGS blood_normal CPT0175220002 3d1292bd-dfff-44c5-a6ad-b4bb3452f79c_wgs_gdc_realn.bam 84456783103 BAM harmonized CPTAC3 b3e28b59-bc29-4464-8d3d-205a7ead299c 749bd1a80fe24e18f6cc4be47bf8f398 {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal"} -C3L-02163.WGS.T C3L-02163 LSCC WGS tumor CPT0175120006 CPT0175120006.WholeGenome.RP-1303.bam 59541845706 BAM aligned CPTAC3 a642ddb4-f191-43e9-8043-6612d965ef2d b768bd9e8ff22ca4e927de1be4307405 {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor"} -C3L-02163.WGS.T.hg38 C3L-02163 LSCC WGS tumor CPT0175120006 c3fcf397-78d9-40cb-a915-24bbc9a5cb59_wgs_gdc_realn.bam 86351879621 BAM harmonized CPTAC3 b08c1b94-78fd-455d-84f9-dd84d222979c 45dbb162bd7404b03050b9500ceddda4 {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor"} -C3L-02163.WXS.A C3L-02163 LSCC WXS tissue_normal CPT0175160006 CPT0175160006.WholeExome.RP-1303.bam 23104787420 BAM aligned CPTAC3 9e844354-5aa2-4585-9ec7-32982453e342 6930c3935bd3904ce351a5533ae66e03 {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.WXS.A.hg38 C3L-02163 LSCC WXS tissue_normal CPT0175160006 9715fe8d-bfc1-49ce-8853-64f8fbd52500_wxs_gdc_realn.bam 31259166407 BAM harmonized CPTAC3 ee6607c9-511d-4511-b667-05f82ebafb14 451440741bb51d946b9b250e5dd215fc {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02163.WXS.N C3L-02163 LSCC WXS blood_normal CPT0175220002 CPT0175220002.WholeExome.RP-1303.bam 26190573158 BAM aligned CPTAC3 760aec27-ff6c-41ea-a774-0640c71da8c7 87d154cc5e2d6ae4c87201350e0c2888 {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal"} -C3L-02163.WXS.N.hg38 C3L-02163 LSCC WXS blood_normal CPT0175220002 3d1292bd-dfff-44c5-a6ad-b4bb3452f79c_wxs_gdc_realn.bam 35716585239 BAM harmonized CPTAC3 5efb9f9b-8b67-4185-90af-3b6742fe3a23 21697c519449b516686e49c030c0c5ab {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal"} -C3L-02163.WXS.T C3L-02163 LSCC WXS tumor CPT0175120006 CPT0175120006.WholeExome.RP-1303.bam 25384718570 BAM aligned CPTAC3 9eaf325a-015a-419a-8a4f-6de3e28998ed c0329d91b1cb14de2444210517b8996f {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor"} -C3L-02163.WXS.T.hg38 C3L-02163 LSCC WXS tumor CPT0175120006 c3fcf397-78d9-40cb-a915-24bbc9a5cb59_wxs_gdc_realn.bam 34722563570 BAM harmonized CPTAC3 de5f9de8-a1b2-4d7a-bb21-e568208241e9 aaa7ca34d2fc4c9110fe99c9557122f9 {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor"} -C3L-02164.MethArray.Green.A C3L-02164 LSCC Methylation_Array tissue_normal CPT0175270006 203219640172_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6d51002e-43d8-4dd2-9887-86afc4f58134 541840253d5d7c4c3a262d4b632db176 {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.MethArray.Green.T C3L-02164 LSCC Methylation_Array tumor CPT0175260006 203219670217_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9060a6ee-7f05-465d-a053-f7dfdd3f2e87 d21f5d31c5d00be89107ef5bc10b2f5c {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor"} -C3L-02164.MethArray.Red.A C3L-02164 LSCC Methylation_Array tissue_normal CPT0175270006 203219640172_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 c63110ba-4715-4f15-9488-e302bef4d969 4ad923784218e40fdb87456688cca37c {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.MethArray.Red.T C3L-02164 LSCC Methylation_Array tumor CPT0175260006 203219670217_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 d70e33b6-cad8-4194-9cc3-1f7acb37ce64 c7b990a53de83d7048880955b3713ed3 {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor"} -C3L-02164.miRNA-Seq.A.hg38 C3L-02164 LSCC miRNA-Seq tissue_normal CPT0175270009 082ac958-2fbf-427a-aefe-04890001a0f3_mirnaseq_gdc_realn.bam 230223191 BAM harmonized CPTAC3 b813ea57-75a9-4a5c-8272-969b0d2b8b87 f9fd43611742f91ee7930d7cedff667a {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.miRNA-Seq.S15_L003_R1.T C3L-02164 LSCC miRNA-Seq tumor CPT0175260013 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGTCA_S15_L003_R1_001.unaln.bam 248543332 BAM S15_L003_R1 unaligned CPTAC3 fc40d81a-825e-423d-bbf6-9bb673ef3462 c6c274ba171cd4af05759475360842dd {"aliquot_tag": "ALQ_15db5960", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02164.miRNA-Seq.S3_L003_R1.A C3L-02164 LSCC miRNA-Seq tissue_normal CPT0175270009 181219_UNC31-K00269_0173_BHYGJJBBXX_TTAGGC_S3_L003_R1_001.unaln.bam 209613370 BAM S3_L003_R1 unaligned CPTAC3 dbb9cd17-4aab-4628-b7af-48370ccb095d ccd752c8235ddeea5b44463fb3d52ad6 {"aliquot_tag": "ALQ_d175a88f", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.miRNA-Seq.T.hg38 C3L-02164 LSCC miRNA-Seq tumor CPT0175260013 d357793b-6382-4880-822a-2b87596cdde2_mirnaseq_gdc_realn.bam 271331585 BAM harmonized CPTAC3 adb38205-caa8-40f5-9d76-3773ad2f8ba0 1309d14d413b8df26d87218254b0608a {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor"} -C3L-02164.RNA-Seq.chimeric.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.chimeric.gdc_realn.bam 132940541 BAM chimeric harmonized CPTAC3 c2f3a0df-3293-4da8-ac4c-c27f62c79cc3 ec06fd26e2fa111edc207ec3349fc1a9 {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.RNA-Seq.chimeric.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.chimeric.gdc_realn.bam 178709267 BAM chimeric harmonized CPTAC3 623980c6-df8d-4e77-afbd-e3360b35f808 fe155a2590fd3e55a12613f041edaad4 {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor"} -C3L-02164.RNA-Seq.genomic.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.genomic.gdc_realn.bam 7574148616 BAM genomic harmonized CPTAC3 96b0a63c-4d5d-4f80-8612-0686e6afc185 7af90bdd78ec70a2bb835116f4119adb {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.RNA-Seq.genomic.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.genomic.gdc_realn.bam 7431342183 BAM genomic harmonized CPTAC3 d76210d6-f8f4-4892-b40e-1cb794c6166f 8a3962f16e9251a3af4372728b62003d {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor"} -C3L-02164.RNA-Seq.S23_L005_R1.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R1_001.fastq.gz 3310741921 FASTQ S23_L005_R1 unaligned CPTAC3 d9804fb9-2750-416d-b1b0-01c6f143de0b a709da5a4d8148fd139322f8674e47bf {"aliquot_tag": "ALQ_15db5960", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02164.RNA-Seq.S23_L005_R2.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R2_001.fastq.gz 3506868826 FASTQ S23_L005_R2 unaligned CPTAC3 0a0c4652-bdde-4f97-af4b-6b86e2484a39 ee74d83578e699e0034de85a7408276d {"aliquot_tag": "ALQ_15db5960", "sample": "S23", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02164.RNA-Seq.S3_L001_R1.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R1_001.fastq.gz 3293880473 FASTQ S3_L001_R1 unaligned CPTAC3 5a20c427-b058-4d28-9b84-51370059f471 b62960e573bf7858bf3a9fe76fdb47f2 {"aliquot_tag": "ALQ_d175a88f", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.RNA-Seq.S3_L001_R2.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R2_001.fastq.gz 3661444261 FASTQ S3_L001_R2 unaligned CPTAC3 0cc189c1-37d3-48bd-8efc-e679aecfcc1e e424c3f3a7ca72fee4b43118ba12b6f7 {"aliquot_tag": "ALQ_d175a88f", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.RNA-Seq.transcriptome.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.transcriptome.gdc_realn.bam 9162308031 BAM transcriptome harmonized CPTAC3 9d0bc382-57d1-41cf-98c2-8730b58e04bb a87ef2df607aeefdca46011bc5278331 {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.RNA-Seq.transcriptome.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.transcriptome.gdc_realn.bam 9068183320 BAM transcriptome harmonized CPTAC3 e95f9400-8196-48f9-95f6-11880f50b947 e8f7e2afde61162b3c610371dd9958d1 {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor"} -C3L-02164.WGS.A C3L-02164 LSCC WGS tissue_normal CPT0175270006 CPT0175270006.WholeGenome.RP-1303.bam 62155856068 BAM aligned CPTAC3 a74ab8df-51cb-4b7f-84b7-50115a6ee025 d2344c9e90038afdba7431635cd9114c {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.WGS.A.hg38 C3L-02164 LSCC WGS tissue_normal CPT0175270006 29e16a89-1177-45a2-884e-363151aee3c8_wgs_gdc_realn.bam 88533764628 BAM harmonized CPTAC3 6b40e8eb-68d8-4d0d-9cd2-928fb30b8c60 ace2d53c5ec25d9266e1c94fe2bc1a35 {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.WGS.N C3L-02164 LSCC WGS blood_normal CPT0175340002 CPT0175340002.WholeGenome.RP-1303.bam 57807968927 BAM aligned CPTAC3 1a64798d-ab90-479d-b2e5-8824e8da8ed3 508f4df73c3a6cfc913a27f240180554 {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal"} -C3L-02164.WGS.N.hg38 C3L-02164 LSCC WGS blood_normal CPT0175340002 cb3de721-41d7-4780-a377-47238d576458_wgs_gdc_realn.bam 82549938680 BAM harmonized CPTAC3 f6d387d3-30cb-496b-a274-50d628d3124d 750dcc0b57f0303c8a493f9a3029746c {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal"} -C3L-02164.WGS.T C3L-02164 LSCC WGS tumor CPT0175260006 CPT0175260006.WholeGenome.RP-1303.bam 53588197415 BAM aligned CPTAC3 28084428-2e78-481a-aa4e-273c9a4158fb 5c0a82e0ebc1322ddb6a7615f3d2a3ff {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor"} -C3L-02164.WGS.T.hg38 C3L-02164 LSCC WGS tumor CPT0175260006 692c864f-e57b-478b-ade7-7e8ef994bac6_wgs_gdc_realn.bam 76362366393 BAM harmonized CPTAC3 b632788a-df3c-4270-b919-502faaf732b1 3c6c75b7b46e8b1dd121a35bfc14282b {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor"} -C3L-02164.WXS.A C3L-02164 LSCC WXS tissue_normal CPT0175270006 CPT0175270006.WholeExome.RP-1303.bam 21133571894 BAM aligned CPTAC3 a286dc13-5396-490b-9ad5-885e06b05450 2e3e8ff74f78b83dd37d5f7bc5a3fa9c {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.WXS.A.hg38 C3L-02164 LSCC WXS tissue_normal CPT0175270006 29e16a89-1177-45a2-884e-363151aee3c8_wxs_gdc_realn.bam 29283607750 BAM harmonized CPTAC3 70fb0d1d-2c6d-4322-99bf-547523d24c4f c33ca8eb68109cee6a2844c5e70d9898 {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02164.WXS.N C3L-02164 LSCC WXS blood_normal CPT0175340002 CPT0175340002.WholeExome.RP-1303.bam 27331911113 BAM aligned CPTAC3 6bb1cca5-88f5-4c0b-957f-f1a8f5e6643d 85b68774cf61e045a4b0af0fabc54abe {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal"} -C3L-02164.WXS.N.hg38 C3L-02164 LSCC WXS blood_normal CPT0175340002 cb3de721-41d7-4780-a377-47238d576458_wxs_gdc_realn.bam 37432081911 BAM harmonized CPTAC3 2619f144-48ba-440e-9317-d91207766303 fb3ce43ace2ea9fb81df5e2050e38820 {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal"} -C3L-02164.WXS.T C3L-02164 LSCC WXS tumor CPT0175260006 CPT0175260006.WholeExome.RP-1303.bam 26037754924 BAM aligned CPTAC3 4da305b8-e127-4983-a169-984f1e30ab9e bd567d952ba799c8711827630050c634 {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor"} -C3L-02164.WXS.T.hg38 C3L-02164 LSCC WXS tumor CPT0175260006 692c864f-e57b-478b-ade7-7e8ef994bac6_wxs_gdc_realn.bam 35554493969 BAM harmonized CPTAC3 cae3426d-a2fb-46ba-852a-73364bf7f28d 0c0d972769d9ef53962ea92f6572a28d {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor"} -C3L-02165.MethArray.Green.A C3L-02165 LUAD Methylation_Array tissue_normal CPT0129940006 203219650004_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 b505d376-4f4c-4cae-bf57-e3bd03be6d21 c6dfdce1a90300bbd816eb003cb555c5 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.MethArray.Green.T C3L-02165 LUAD Methylation_Array tumor CPT0129910006 203219650003_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 3b558751-c78b-4745-b9a8-963475ec79d0 40a2dbc19a7c7e42443b5236515f8699 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor"} -C3L-02165.MethArray.Red.A C3L-02165 LUAD Methylation_Array tissue_normal CPT0129940006 203219650004_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 5b378a98-fc0b-4cec-b2ee-76a74a0bb5df 107693109d015aede3534cb090a3825b {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.MethArray.Red.T C3L-02165 LUAD Methylation_Array tumor CPT0129910006 203219650003_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 d641dc24-e201-4c79-8a76-70d9c4d3ac8b 26ca7bb039afc6d9add34b961f8d3ea5 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor"} -C3L-02165.miRNA-Seq.A.hg38 C3L-02165 LUAD miRNA-Seq tissue_normal CPT0129940009 30b02e0d-b1f9-4419-a153-3e9087a82090_mirnaseq_gdc_realn.bam 199642953 BAM harmonized CPTAC3 14a6447b-6a33-4713-8220-00a360b13acc 1c0f6174eb105684658cca032086532b {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.miRNA-Seq.S14_L004_R1.A C3L-02165 LUAD miRNA-Seq tissue_normal CPT0129940009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L004_R1_001.unaln.bam 178527203 BAM S14_L004_R1 unaligned CPTAC3 aa52b826-be12-47c9-9745-8daac710a462 176dce3f1787ddac63674a7b4dbad0d0 {"aliquot_tag": "ALQ_7352468c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.miRNA-Seq.S19_L006_R1.T C3L-02165 LUAD miRNA-Seq tumor CPT0129910009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L006_R1_001.unaln.bam 174157669 BAM S19_L006_R1 unaligned CPTAC3 6c23d7f0-b677-4bda-9fa3-7909475e8d4f cab94c6fdc35f1bc1e0e78b5edb824be {"aliquot_tag": "ALQ_bbb2c9fc", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02165.miRNA-Seq.T.hg38 C3L-02165 LUAD miRNA-Seq tumor CPT0129910009 9c3f3ec6-c919-45e6-bc16-7c4387bdf0ff_mirnaseq_gdc_realn.bam 191509412 BAM harmonized CPTAC3 805a564e-ef66-4cf3-b656-94611e681817 08879db9bcc422b92d6be12c0fc90b67 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor"} -C3L-02165.RNA-Seq.chimeric.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.chimeric.gdc_realn.bam 33366406 BAM chimeric harmonized CPTAC3 4573db0d-2895-471b-be98-b330979d2e0a a37ca9ee7e118cdc8c0dd105e35ed9f9 {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.RNA-Seq.chimeric.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.chimeric.gdc_realn.bam 33810634 BAM chimeric harmonized CPTAC3 9c96e594-c986-4596-9066-0199ed3e6670 2395e476591588fe185a10fb98a6aa36 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor"} -C3L-02165.RNA-Seq.genomic.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.genomic.gdc_realn.bam 7646602407 BAM genomic harmonized CPTAC3 c92d10fa-dd65-4a06-9e71-940991cc1d8d 02bafa17632bfc2126220c1cde20cc2d {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.RNA-Seq.genomic.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.genomic.gdc_realn.bam 8932270188 BAM genomic harmonized CPTAC3 3cea45ec-98a7-4451-88b8-95a467af9cf5 c2f7d9da664caa8c43e292a04162f663 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor"} -C3L-02165.RNA-Seq.S19_L005_R1.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R1_001.fastq.gz 3947914233 FASTQ S19_L005_R1 unaligned CPTAC3 8857b412-d9ef-4375-b15d-7700b63e8f4c 5527505aa9f6c5d8e6bbfe0fb535e123 {"aliquot_tag": "ALQ_bbb2c9fc", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02165.RNA-Seq.S19_L005_R2.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R2_001.fastq.gz 4055843633 FASTQ S19_L005_R2 unaligned CPTAC3 e99cae96-be04-4b4f-b22a-0a2691cf4fc5 10cb3fb1d26223b9ed1198c6d8d01fa3 {"aliquot_tag": "ALQ_bbb2c9fc", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02165.RNA-Seq.S5_L002_R1.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3522872141 FASTQ S5_L002_R1 unaligned CPTAC3 6ffc1beb-76ec-4351-a24a-e6f6f0e29245 8d979c64d1092ae09dc7205c6b5869dd {"aliquot_tag": "ALQ_7352468c", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.RNA-Seq.S5_L002_R2.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3714726213 FASTQ S5_L002_R2 unaligned CPTAC3 6152441d-aa4d-4192-a405-87efbadfd169 d9a30b01f6bcd1aa2f55de1301f0304d {"aliquot_tag": "ALQ_7352468c", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.RNA-Seq.transcriptome.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.transcriptome.gdc_realn.bam 10537743869 BAM transcriptome harmonized CPTAC3 11d96ff4-c466-4151-9123-dfe92ae3dda4 16b1a59ea0ea701b70f73b454ebe2dd1 {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.RNA-Seq.transcriptome.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.transcriptome.gdc_realn.bam 9615734135 BAM transcriptome harmonized CPTAC3 106224cf-fffb-4bbe-8fc9-e0642091e8a5 97c4950a7c744dd84de9f3caced250b4 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor"} -C3L-02165.WGS.A C3L-02165 LUAD WGS tissue_normal CPT0129940006 CPT0129940006.WholeGenome.RP-1303.bam 59487889443 BAM aligned CPTAC3 398840b5-e9ef-40de-87ee-837549618893 4617728254055fc423315df48ed5a91c {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.WGS.A.hg38 C3L-02165 LUAD WGS tissue_normal CPT0129940006 ba1cc750-8ff6-46bf-ae81-ce29d02f518f_wgs_gdc_realn.bam 86663973046 BAM harmonized CPTAC3 8add41f7-6199-4743-b699-2d1ae230455d 123f607c8a858bbbd1d975f29c1f6a76 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.WGS.N C3L-02165 LUAD WGS blood_normal CPT0130010002 CPT0130010002.WholeGenome.RP-1303.bam 54608956474 BAM aligned CPTAC3 d5eaadc8-cd10-476d-abf7-78b4e45d16ae 352809af870f26820f9e757ee817cc69 {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02165.WGS.N.hg38 C3L-02165 LUAD WGS blood_normal CPT0130010002 c34832b9-9c05-4ac5-a581-a59d59d2e8bb_wgs_gdc_realn.bam 80361785822 BAM harmonized CPTAC3 fbea6bd0-b205-4088-a344-62d7656b9bf1 a19c6c67e8f75fbb02ed775a650ee4ad {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02165.WGS.T C3L-02165 LUAD WGS tumor CPT0129910006 CPT0129910006.WholeGenome.RP-1303.bam 52115223295 BAM aligned CPTAC3 91087056-bc6b-425c-85af-6dab946f5c48 79dabc22f527da6e9874bbfa7c6cc96d {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor"} -C3L-02165.WGS.T.hg38 C3L-02165 LUAD WGS tumor CPT0129910006 de799385-c88e-4f46-a502-b0c4d6b0a6a9_wgs_gdc_realn.bam 76096623254 BAM harmonized CPTAC3 b0a4bb47-d668-414e-832f-baaa4a0297e4 bd1006d2e7fc87296091c3d289342966 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor"} -C3L-02165.WXS.A C3L-02165 LUAD WXS tissue_normal CPT0129940006 CPT0129940006.WholeExome.RP-1303.bam 26930660899 BAM aligned CPTAC3 74417c66-6972-4ea5-8bf5-07b5448c9060 27245c70c7a1234ebee4fa298f61b595 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.WXS.A.hg38 C3L-02165 LUAD WXS tissue_normal CPT0129940006 ba1cc750-8ff6-46bf-ae81-ce29d02f518f_wxs_gdc_realn.bam 36413909677 BAM harmonized CPTAC3 fe289a7d-799c-4201-8c8e-95ad18e90fd0 e14327587265925a6ea138444e33ab43 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02165.WXS.N C3L-02165 LUAD WXS blood_normal CPT0130010002 CPT0130010002.WholeExome.RP-1303.bam 33460939232 BAM aligned CPTAC3 5461310d-d5ee-49e7-9283-448111b8f5f7 783480c96b2967e2f3037bbc00cdc3bd {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02165.WXS.N.hg38 C3L-02165 LUAD WXS blood_normal CPT0130010002 c34832b9-9c05-4ac5-a581-a59d59d2e8bb_wxs_gdc_realn.bam 46700593099 BAM harmonized CPTAC3 c0bac254-c578-433f-866b-45c5cadb3b81 dcac9970421637c5267c7862458836f2 {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02165.WXS.T C3L-02165 LUAD WXS tumor CPT0129910006 CPT0129910006.WholeExome.RP-1303.bam 18339853372 BAM aligned CPTAC3 77d5f08c-cbcd-49f8-a2c0-0b4503088b1c 96aaf3900462656119a3f01781e0d394 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor"} -C3L-02165.WXS.T.hg38 C3L-02165 LUAD WXS tumor CPT0129910006 de799385-c88e-4f46-a502-b0c4d6b0a6a9_wxs_gdc_realn.bam 25451318152 BAM harmonized CPTAC3 8120f159-e48c-4db7-9993-aaaf42cfbd70 5b14ef01ff0909dfe8d29f490c92260e {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor"} -C3L-02168.MethArray.Green.A C3L-02168 LSCC Methylation_Array tissue_normal CPT0175410006 203220070082_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b9d75ffe-1a54-4ac2-8303-ef0308e2e657 6035bf6e445b6ccbb480d025c66acf8a {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.MethArray.Green.T C3L-02168 LSCC Methylation_Array tumor CPT0175390006 203219760065_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b2b0c4c-5665-48d8-a868-d4def29b30a4 23d403f9c671cd2b9738a1bd98df8b66 {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor"} -C3L-02168.MethArray.Red.A C3L-02168 LSCC Methylation_Array tissue_normal CPT0175410006 203220070082_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 9ef277be-d61e-4972-8f84-2db3489dfe0e 364207a1a7763b13382f6b252486dcd1 {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.MethArray.Red.T C3L-02168 LSCC Methylation_Array tumor CPT0175390006 203219760065_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 9c387d13-3ed0-4515-b984-544a4910b4c8 5630be29be0158b4423ee6e8b5cd73af {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor"} -C3L-02168.miRNA-Seq.A.hg38 C3L-02168 LSCC miRNA-Seq tissue_normal CPT0175410009 6f5bcb38-412c-45d0-b669-dac7e38dca33_mirnaseq_gdc_realn.bam 357566620 BAM harmonized CPTAC3 e4844eea-1a1f-4e0b-a355-377cc2c08068 8d6dc235cfa68287715c5aeac23822c7 {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.miRNA-Seq.S22_L001_R1.A C3L-02168 LSCC miRNA-Seq tissue_normal CPT0175410009 181219_UNC31-K00269_0173_BHYGJJBBXX_GAGTGG_S22_L001_R1_001.unaln.bam 321047686 BAM S22_L001_R1 unaligned CPTAC3 7738d701-b654-40f2-832f-b5953413ef75 f52230acc42eb04225bcfc29d29873fe {"aliquot_tag": "ALQ_886cbe32", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.miRNA-Seq.S46_L002_R1.T C3L-02168 LSCC miRNA-Seq tumor CPT0175390009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGAAG_S46_L002_R1_001.unaln.bam 217926140 BAM S46_L002_R1 unaligned CPTAC3 8b603844-5fd0-460e-8eb6-15b6501ce0b3 b44cb224460e234d5865944c8564f1a5 {"aliquot_tag": "ALQ_a519c54b", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02168.miRNA-Seq.T.hg38 C3L-02168 LSCC miRNA-Seq tumor CPT0175390009 45b5f7a8-e4f8-402a-aa60-af007a178911_mirnaseq_gdc_realn.bam 245275324 BAM harmonized CPTAC3 0d96bbe2-66c2-4713-a6f7-22389653e7d7 ca6c661939578839bc3a7ee80d29d240 {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor"} -C3L-02168.RNA-Seq.chimeric.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.chimeric.gdc_realn.bam 34315856 BAM chimeric harmonized CPTAC3 6831c6ea-d6ba-4105-a7e1-529cb7c80989 1426225f7f745f30c35908c23b0216a0 {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.RNA-Seq.chimeric.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.chimeric.gdc_realn.bam 30954593 BAM chimeric harmonized CPTAC3 7fe9eb44-8a60-4d6c-8cc6-fe21f6c0c60d c94be8adb5892a548f67dd540c4ee29b {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor"} -C3L-02168.RNA-Seq.genomic.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.genomic.gdc_realn.bam 9241772687 BAM genomic harmonized CPTAC3 20031b39-aacf-4dec-b610-09238b907877 e498e71d6a4e1c4a0ff2eecd2c5c20af {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.RNA-Seq.genomic.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.genomic.gdc_realn.bam 8935052837 BAM genomic harmonized CPTAC3 110298b8-ece4-4a62-aee1-42db054163c2 0a7badb0b3e56d8261c84177e350db4b {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor"} -C3L-02168.RNA-Seq.S8_L002_R1.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4475051354 FASTQ S8_L002_R1 unaligned CPTAC3 2fc3a64e-f1ec-4d8c-a37e-f0e9b9c72dad 47c7f3cccf8accbb21dd1f079fcbe0d4 {"aliquot_tag": "ALQ_886cbe32", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.RNA-Seq.S8_L002_R2.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4776309378 FASTQ S8_L002_R2 unaligned CPTAC3 8e8bbb4b-680a-4b55-96f5-9d29a667fce9 28484f010c0161a2b7df9611df4aa1ae {"aliquot_tag": "ALQ_886cbe32", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.RNA-Seq.S8_L008_R1.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4109780635 FASTQ S8_L008_R1 unaligned CPTAC3 a1ba4506-e692-4cab-ad3c-35743423bd0f 4b01a8a7eac87e8412656b9b87455c1c {"aliquot_tag": "ALQ_a519c54b", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02168.RNA-Seq.S8_L008_R2.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4242617728 FASTQ S8_L008_R2 unaligned CPTAC3 0c6c6156-47e4-4738-9203-195cb585064c 94eb53844c6639aa23d72d7428773450 {"aliquot_tag": "ALQ_a519c54b", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02168.RNA-Seq.transcriptome.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.transcriptome.gdc_realn.bam 11790388632 BAM transcriptome harmonized CPTAC3 0dbd5545-6be1-4ea8-b075-ae56c44f546a 949fb45fbf3362ba3beffde71569a230 {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.RNA-Seq.transcriptome.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.transcriptome.gdc_realn.bam 11019878459 BAM transcriptome harmonized CPTAC3 2b716955-2d9e-44fa-a3cc-5aa3c44d286d 4a025239fb9515024f3d2f7e8cad813a {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor"} -C3L-02168.WGS.A C3L-02168 LSCC WGS tissue_normal CPT0175410006 CPT0175410006.WholeGenome.RP-1303.bam 56370341457 BAM aligned CPTAC3 6c105c2e-6647-48d7-8504-e44654c47a93 19d947dc61e4c938062c227de0729e89 {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.WGS.A.hg38 C3L-02168 LSCC WGS tissue_normal CPT0175410006 c15d8e6d-02f7-4ae3-9fd8-23cb0665ec92_wgs_gdc_realn.bam 82552509795 BAM harmonized CPTAC3 66f7cc00-1b8b-43db-88dd-3c349bd45f75 c9f0d56bc4b08fcba86627cccad42cd6 {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.WGS.N C3L-02168 LSCC WGS blood_normal CPT0175480002 CPT0175480002.WholeGenome.RP-1303.bam 61292219952 BAM aligned CPTAC3 d7893b89-4d0c-49ec-b932-09eeab283e72 217a957f4dc290112099f43607b20ddf {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-02168.WGS.N.hg38 C3L-02168 LSCC WGS blood_normal CPT0175480002 0ccfe2e3-b8d8-46f7-9330-adeb25be08e0_wgs_gdc_realn.bam 89124593493 BAM harmonized CPTAC3 5266fb4a-b4bf-4025-bb28-82fdd77837e0 902d2327b310fcaadad55492fa6aee7d {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-02168.WGS.T C3L-02168 LSCC WGS tumor CPT0175390006 CPT0175390006.WholeGenome.RP-1303.bam 66080737100 BAM aligned CPTAC3 ae6ef28b-f9ea-40ea-87eb-62a2e97fb910 ad8af31d0fe2648640b4c069795ab3c2 {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor"} -C3L-02168.WGS.T.hg38 C3L-02168 LSCC WGS tumor CPT0175390006 4a02531c-43ca-4755-b48a-f9732230695f_wgs_gdc_realn.bam 95264569703 BAM harmonized CPTAC3 d4e214d0-f287-4325-85b0-d467b42d6045 b0c419d7f5a23761c87d8b2f39da4e0e {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor"} -C3L-02168.WXS.A C3L-02168 LSCC WXS tissue_normal CPT0175410006 CPT0175410006.WholeExome.RP-1303.bam 23814179617 BAM aligned CPTAC3 dd8adeb7-2774-4373-8514-4b14a0060440 75abe853f4ad2215094a862c7a549f0a {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.WXS.A.hg38 C3L-02168 LSCC WXS tissue_normal CPT0175410006 c15d8e6d-02f7-4ae3-9fd8-23cb0665ec92_wxs_gdc_realn.bam 32912622572 BAM harmonized CPTAC3 e764231c-a50d-4fc0-89e9-83db439940a0 d0ca21dd1a1f0e4913400235bc2bf60b {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02168.WXS.N C3L-02168 LSCC WXS blood_normal CPT0175480002 CPT0175480002.WholeExome.RP-1303.bam 34760199877 BAM aligned CPTAC3 1aecc33b-0ff3-422c-aa28-f137690b5d52 ddd31280310771cd0bc1caa495753ab9 {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-02168.WXS.N.hg38 C3L-02168 LSCC WXS blood_normal CPT0175480002 0ccfe2e3-b8d8-46f7-9330-adeb25be08e0_wxs_gdc_realn.bam 47387802631 BAM harmonized CPTAC3 c47e4f68-1b43-479c-af27-f585fb5347f3 28bbaa3972658dbdea03d32606098763 {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-02168.WXS.T C3L-02168 LSCC WXS tumor CPT0175390006 CPT0175390006.WholeExome.RP-1303.bam 33095901242 BAM aligned CPTAC3 b1836aca-9602-49d9-949b-bae06062be16 b3b6497fdaa7461ac96149699573c452 {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor"} -C3L-02168.WXS.T.hg38 C3L-02168 LSCC WXS tumor CPT0175390006 4a02531c-43ca-4755-b48a-f9732230695f_wxs_gdc_realn.bam 46704831083 BAM harmonized CPTAC3 9643871e-6530-4d1e-920e-530f826ebdaf 46ce1796f888b42cd6393bd2cc273dad {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor"} -C3L-02169.MethArray.Green.A C3L-02169 LUAD Methylation_Array tissue_normal CPT0175710006 203219650176_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 61e40b56-e94e-4e16-bd04-c913555ba1d7 652a2ec702533fa1faa32b675b3d56b5 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.MethArray.Green.T C3L-02169 LUAD Methylation_Array tumor CPT0175660006 203219670118_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9cbb618c-2c7a-4796-b232-6f65521421e3 644df2f1431b44dc353d82465a538fa7 {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor"} -C3L-02169.MethArray.Red.A C3L-02169 LUAD Methylation_Array tissue_normal CPT0175710006 203219650176_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 6f9ed8ef-da73-4e1d-8814-dc942f97a56a 6c8ded30b5d29a1e3a92c4ec75cdb1f8 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.MethArray.Red.T C3L-02169 LUAD Methylation_Array tumor CPT0175660006 203219670118_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 9740eede-b7e6-4aa6-89f3-524bddef04ba f7c79eb329cdf130f03155953ce059eb {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor"} -C3L-02169.miRNA-Seq.A.hg38 C3L-02169 LUAD miRNA-Seq tissue_normal CPT0175710009 63054a39-2f87-4083-8b2f-c83604062cf1_mirnaseq_gdc_realn.bam 292412084 BAM harmonized CPTAC3 356ed667-cc07-4e59-83d1-44c8c51500d6 f832bf5e582d5edf925f38fc86083366 {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.miRNA-Seq.S11_L008_R1.A C3L-02169 LUAD miRNA-Seq tissue_normal CPT0175710009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L008_R1_001.unaln.bam 267880462 BAM S11_L008_R1 unaligned CPTAC3 278c6ef4-0cce-4c36-91f1-e362019901d5 6ae4b9ab8c4c6f0500eabf39358a9b23 {"aliquot_tag": "ALQ_ef8cc9c", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.miRNA-Seq.S20_L006_R1.T C3L-02169 LUAD miRNA-Seq tumor CPT0175660009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L006_R1_001.unaln.bam 172889673 BAM S20_L006_R1 unaligned CPTAC3 aa2df2e4-ef1d-4120-8d60-a4eb2bed9a2b 5d6c6a3a7e708fdadf1510cfe2516ae1 {"aliquot_tag": "ALQ_7784c329", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02169.miRNA-Seq.T.hg38 C3L-02169 LUAD miRNA-Seq tumor CPT0175660009 e1fe640d-55b6-4bcd-86c2-50d232fe0726_mirnaseq_gdc_realn.bam 189579694 BAM harmonized CPTAC3 6fa879b3-b6a9-4e7c-820c-52f165879198 e2d599e0d14527496e65c56b89d65016 {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor"} -C3L-02169.RNA-Seq.chimeric.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.chimeric.gdc_realn.bam 404685344 BAM chimeric harmonized CPTAC3 076fbae6-62de-4ac8-8852-5e54217a1136 321c2ea859a7aeba9d36f14c5d12c3cb {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.RNA-Seq.chimeric.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.chimeric.gdc_realn.bam 45352652 BAM chimeric harmonized CPTAC3 510cd053-d87f-4791-9342-41161cf2e8d7 afe8e7bec58f53422f50e98419fe261e {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor"} -C3L-02169.RNA-Seq.genomic.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.genomic.gdc_realn.bam 7045813099 BAM genomic harmonized CPTAC3 fd5e68c3-75e7-470d-ae91-8bd39d9955a2 5c9a03a40248af9af90830c6b222ddb3 {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.RNA-Seq.genomic.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.genomic.gdc_realn.bam 8822263905 BAM genomic harmonized CPTAC3 e99cd478-29bb-4568-a354-fa59c65803c0 6b0613314c44bf2d2dd340b6092a9b12 {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor"} -C3L-02169.RNA-Seq.S2_L004_R1.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R1_001.fastq.gz 3137684503 FASTQ S2_L004_R1 unaligned CPTAC3 3a6178ab-bb41-49a3-a5dd-0a91c49505e2 d9a8ddd0b95c2e5af2f82c541016db19 {"aliquot_tag": "ALQ_ef8cc9c", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.RNA-Seq.S2_L004_R2.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R2_001.fastq.gz 3376200871 FASTQ S2_L004_R2 unaligned CPTAC3 4eecf64a-efc8-4396-a9e3-32f444812f64 9cacbad6323ea7a4a2750aec50fadff6 {"aliquot_tag": "ALQ_ef8cc9c", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.RNA-Seq.S5_L004_R1.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R1_001.fastq.gz 3904697322 FASTQ S5_L004_R1 unaligned CPTAC3 db7050c8-7eb4-4739-a7d6-9b941c0b0425 40366141b7ea3a541df3d6706a572869 {"aliquot_tag": "ALQ_7784c329", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02169.RNA-Seq.S5_L004_R2.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R2_001.fastq.gz 4385390689 FASTQ S5_L004_R2 unaligned CPTAC3 faeae4e9-d05d-46ab-882a-e98f2771e6ed 9b1e24df10d401d81507e16adb00a414 {"aliquot_tag": "ALQ_7784c329", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02169.RNA-Seq.transcriptome.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.transcriptome.gdc_realn.bam 8044393588 BAM transcriptome harmonized CPTAC3 0a5f8ff1-a4bc-4b50-89e6-b6cb0ed21a6b 2b1fe4e5545f21f25ad040521192da28 {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.RNA-Seq.transcriptome.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.transcriptome.gdc_realn.bam 10591413909 BAM transcriptome harmonized CPTAC3 e1e71222-c787-4fbe-a15b-be7d1216702b b33c5495ca4018215fe14ea7aad256e9 {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor"} -C3L-02169.WGS.A C3L-02169 LUAD WGS tissue_normal CPT0175710006 CPT0175710006.WholeGenome.RP-1303.bam 53372945797 BAM aligned CPTAC3 1477b884-c901-4002-b3ff-1514909d782b 8e197e06a7cef97f57c4f77a78a12b0f {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.WGS.A.hg38 C3L-02169 LUAD WGS tissue_normal CPT0175710006 6dbeeb29-7bd3-4a25-b571-8e60b4655ceb_wgs_gdc_realn.bam 77303064830 BAM harmonized CPTAC3 d30c8364-c3e4-4b6a-bb15-fc82540939f3 49251dddb6773fb8c1efba4c0a295853 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.WGS.N C3L-02169 LUAD WGS blood_normal CPT0175780002 CPT0175780002.WholeGenome.RP-1303.bam 64451145950 BAM aligned CPTAC3 cd56bc76-d3d9-499a-8e2d-2d19089db42a 39509e72e8f08b780f912305ee28d532 {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal"} -C3L-02169.WGS.N.hg38 C3L-02169 LUAD WGS blood_normal CPT0175780002 650a2f0e-c2b7-49d8-a61a-d6b420f000e2_wgs_gdc_realn.bam 93854024125 BAM harmonized CPTAC3 812b96aa-6bd9-4105-b8cc-4101ea562e38 165f088cb00493ad6d1b4751b363f9bd {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal"} -C3L-02169.WGS.T C3L-02169 LUAD WGS tumor CPT0175660006 CPT0175660006.WholeGenome.RP-1303.bam 52183643117 BAM aligned CPTAC3 5a45e392-04b8-4d27-bfaa-7267dc2b0fef 70dd18a483c84eb009d811c95e04d80e {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor"} -C3L-02169.WGS.T.hg38 C3L-02169 LUAD WGS tumor CPT0175660006 12a95ce5-d1e9-4029-8e73-ac1eb765082f_wgs_gdc_realn.bam 74682366099 BAM harmonized CPTAC3 ae53d7d1-50f5-4350-9979-332e2e55fccb ac3cca2d829f152f826149191c5ceafc {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor"} -C3L-02169.WXS.A C3L-02169 LUAD WXS tissue_normal CPT0175710006 CPT0175710006.WholeExome.RP-1303.bam 25751415666 BAM aligned CPTAC3 4783da09-40a8-4bab-aecf-015dd1cd3bce 366b21cb4d1a674dc9ff7d40a5dc45c6 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.WXS.A.hg38 C3L-02169 LUAD WXS tissue_normal CPT0175710006 6dbeeb29-7bd3-4a25-b571-8e60b4655ceb_wxs_gdc_realn.bam 36469932533 BAM harmonized CPTAC3 95ce1d8a-444b-4e9c-8b57-f6906f4704ca c4c978db240960b758630f3ee87b4f74 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02169.WXS.N C3L-02169 LUAD WXS blood_normal CPT0175780002 CPT0175780002.WholeExome.RP-1303.bam 21808367417 BAM aligned CPTAC3 b09bbe95-561f-4b00-a7d8-43332247d5ef 49c01869f621f4ee7a7e14eb9affde33 {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal"} -C3L-02169.WXS.N.hg38 C3L-02169 LUAD WXS blood_normal CPT0175780002 650a2f0e-c2b7-49d8-a61a-d6b420f000e2_wxs_gdc_realn.bam 30295540866 BAM harmonized CPTAC3 56701f8e-cbcb-4670-909d-0550fe95986a 76c4b63b06e1a5632890cf5bc09c63fe {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal"} -C3L-02169.WXS.T C3L-02169 LUAD WXS tumor CPT0175660006 CPT0175660006.WholeExome.RP-1303.bam 25137406545 BAM aligned CPTAC3 52833b07-2205-42f8-8169-0d504fea518b da50cc0bda10ae03386d1e855ff88f45 {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor"} -C3L-02169.WXS.T.hg38 C3L-02169 LUAD WXS tumor CPT0175660006 12a95ce5-d1e9-4029-8e73-ac1eb765082f_wxs_gdc_realn.bam 35273434511 BAM harmonized CPTAC3 de1ccc9d-ab42-4c82-b1a7-918cf2cc21a1 979d23f04a1685a154055eb8f6e6f1fa {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor"} -C3L-02170.MethArray.Green.T C3L-02170 LSCC Methylation_Array tumor CPT0175560006 203219670180_R06C01_Grn.idat 13676242 IDAT Green NA CPTAC3 1962f4b9-2bef-46b8-8eb5-50c0b3e76b05 b91edb42cfcee267abb64064fbbb12bb {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor"} -C3L-02170.MethArray.Red.T C3L-02170 LSCC Methylation_Array tumor CPT0175560006 203219670180_R06C01_Red.idat 13676242 IDAT Red NA CPTAC3 e1bacb06-3333-450e-9acc-5720143327bc 90586d4a3b0d68adc6bc2eb6ead0a25d {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor"} -C3L-02170.miRNA-Seq.S47_L002_R1.T C3L-02170 LSCC miRNA-Seq tumor CPT0175560009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGGCA_S47_L002_R1_001.unaln.bam 225890635 BAM S47_L002_R1 unaligned CPTAC3 f9c72fed-71a0-47cb-baea-3f490be268a2 8950a8c98666ef2e52be2938ee779dc5 {"aliquot_tag": "ALQ_f110b187", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02170.miRNA-Seq.T.hg38 C3L-02170 LSCC miRNA-Seq tumor CPT0175560009 81dac0c4-0deb-4fda-b983-46cca868ae64_mirnaseq_gdc_realn.bam 243739839 BAM harmonized CPTAC3 903832cc-ca9e-4dfb-9e4a-16d6655e6813 ac21d7f53906ab28751d2cd4dc48b49b {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor"} -C3L-02170.RNA-Seq.chimeric.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.chimeric.gdc_realn.bam 29188651 BAM chimeric harmonized CPTAC3 c2641f9b-f61c-4fbd-9119-480f9bde2cbb 677115d598a296b2f113d7e9f0368968 {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor"} -C3L-02170.RNA-Seq.genomic.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.genomic.gdc_realn.bam 9824460612 BAM genomic harmonized CPTAC3 e78b0236-bb6b-4fbe-b8ee-c95c68cadf87 ce990bc3935b9f6eeb78d2d3cdd8f47c {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor"} -C3L-02170.RNA-Seq.S7_L008_R1.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3934238485 FASTQ S7_L008_R1 unaligned CPTAC3 e53eb452-b1c7-4424-92d6-63429ebb186b 4acf54573009b33e9857c7f8c5cd7e99 {"aliquot_tag": "ALQ_f110b187", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02170.RNA-Seq.S7_L008_R2.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4020225425 FASTQ S7_L008_R2 unaligned CPTAC3 bb75192c-21f5-4972-bb3d-d966d7926373 c4e90d52bcf592cb14710073a73d918f {"aliquot_tag": "ALQ_f110b187", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02170.RNA-Seq.transcriptome.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.transcriptome.gdc_realn.bam 10631802089 BAM transcriptome harmonized CPTAC3 ff856745-6e31-4208-81e1-e23759dbfce9 446e68cf5f14bc5853ed550a91278c43 {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor"} -C3L-02170.WGS.N C3L-02170 LSCC WGS blood_normal CPT0175640002 CPT0175640002.WholeGenome.RP-1303.bam 59532054822 BAM aligned CPTAC3 51eddac4-803a-45c3-a541-7292e23c2c93 cc9e32fd406c8ef7df242e8f7fee2486 {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02170.WGS.N.hg38 C3L-02170 LSCC WGS blood_normal CPT0175640002 dd54f8e5-09cc-4925-86e5-797f029e52cb_wgs_gdc_realn.bam 86046076265 BAM harmonized CPTAC3 e7b0ff87-766c-4143-978f-f5f108948904 79de1566a1ee47628f19df1063caad4a {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02170.WGS.T C3L-02170 LSCC WGS tumor CPT0175560006 CPT0175560006.WholeGenome.RP-1303.bam 63482193006 BAM aligned CPTAC3 01a1ba24-7797-434c-a487-887ceee62aa3 6660aa163385b533b3ba1af3d618df45 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor"} -C3L-02170.WGS.T.hg38 C3L-02170 LSCC WGS tumor CPT0175560006 5222af15-8276-44d6-927e-e46b9d44f28d_wgs_gdc_realn.bam 91723359858 BAM harmonized CPTAC3 da9c9114-f494-4d90-a45c-513173fe8bde 889d1d1c725e5ea9abcb8c62188707e9 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor"} -C3L-02170.WXS.N C3L-02170 LSCC WXS blood_normal CPT0175640002 CPT0175640002.WholeExome.RP-1303.bam 19615307519 BAM aligned CPTAC3 d8540548-5ba3-4562-b0e5-e6b99b75655a 3c7805cd059fc0c55cbd868c2e121c13 {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02170.WXS.N.hg38 C3L-02170 LSCC WXS blood_normal CPT0175640002 dd54f8e5-09cc-4925-86e5-797f029e52cb_wxs_gdc_realn.bam 26757263345 BAM harmonized CPTAC3 bbf1978b-1db4-4656-a991-70479d05d1f6 4c3b13d0d7c575ed56f7e586dc5bd580 {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02170.WXS.T C3L-02170 LSCC WXS tumor CPT0175560006 CPT0175560006.WholeExome.RP-1303.bam 29024736524 BAM aligned CPTAC3 3c7cc608-1008-47c5-bff2-2b3f81cce2e1 f2ecdde9aa4537c9eda9275b8d6d81a6 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor"} -C3L-02170.WXS.T.hg38 C3L-02170 LSCC WXS tumor CPT0175560006 5222af15-8276-44d6-927e-e46b9d44f28d_wxs_gdc_realn.bam 40442856125 BAM harmonized CPTAC3 4fd70b41-4cd0-4908-9142-5a155538ff12 c51b14a5303eabbccb20cee25ab634f7 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor"} -C3L-02175.ADD_d091988c.MethArray.Green.T C3L-02175 CCRCC Methylation_Array tumor CPT0100410009 203219650217_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c73f197d-5d99-493f-adfc-dbea318d2d16 a742c9cea44853f0a60802529202029d {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-02175.ADD_d091988c.MethArray.Red.T C3L-02175 CCRCC Methylation_Array tumor CPT0100410009 203219650217_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 b7bfefdf-b8fc-4145-9e29-9aeebf923c02 f23b16fc12038ed2c4065713c80ffd0b {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-02175.ADD_d091988c.WGS.T C3L-02175 CCRCC WGS tumor CPT0100410009 CPT0100410009.WholeGenome.RP-1303.bam 56642132340 BAM aligned CPTAC3 490dffaf-67a4-4bfe-82d1-1caf85c4dead 2db3cedb7e7ee031a8a0431f21698df1 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-02175.ADD_d091988c.WGS.T.hg38 C3L-02175 CCRCC WGS tumor CPT0100410009 573d770d-55a6-413b-874b-444f2bff1b31_wgs_gdc_realn.bam 83424429662 BAM harmonized CPTAC3 71aa6238-f9f2-4374-a406-c192e6ed0154 2d000c55fb30017d3083f516535b9c70 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-02175.ADD_d091988c.WXS.T C3L-02175 CCRCC WXS tumor CPT0100410009 CPT0100410009.WholeExome.RP-1303.bam 33972199619 BAM aligned CPTAC3 d928773d-767a-46c3-8c6d-bb6f95f4da3f 9fcf4411d17a7118592c2402c0857df7 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-02175.ADD_d091988c.WXS.T.hg38 C3L-02175 CCRCC WXS tumor CPT0100410009 573d770d-55a6-413b-874b-444f2bff1b31_wxs_gdc_realn.bam 47301558950 BAM harmonized CPTAC3 3e4b4d1b-be24-459c-8fcf-1e464a8912df d07d5032e89fa2ba0e5d959fad934ef2 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor"} -C3L-02175.miRNA-Seq.S25_L007_R1.T C3L-02175 CCRCC miRNA-Seq tumor CPT0100410006 180828_UNC32-K00270_0112_AHWTLNBBXX_ACTGAT_S25_L007_R1_001.unaln.bam 342586292 BAM S25_L007_R1 unaligned CPTAC3 211c7236-a41f-4447-a5bf-b9567bf60077 6737ad8177d768f81ce3df2c97afb267 {"aliquot_tag": "ALQ_402e851d", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02175.miRNA-Seq.T.hg38 C3L-02175 CCRCC miRNA-Seq tumor CPT0100410006 b2cf64ca-e527-4ca1-95be-a369faefa578_mirnaseq_gdc_realn.bam 384369823 BAM harmonized CPTAC3 29720da5-ae6c-4636-a1e6-ed6e59aa118b 2bc4fc41ac0318013f69c84c0cf2bc87 {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor"} -C3L-02175.RNA-Seq.chimeric.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.chimeric.gdc_realn.bam 42517230 BAM chimeric harmonized CPTAC3 ee4f0929-aaf5-4d93-aeb7-1dd934681ea8 a7999b02a6dad3e63a8f716d2f193d1f {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor"} -C3L-02175.RNA-Seq.genomic.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.genomic.gdc_realn.bam 10163917859 BAM genomic harmonized CPTAC3 8d9297a4-6bbc-41e5-95ac-28f32ff0bdc0 5146f746f96af47af4f38aa50235cde3 {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor"} -C3L-02175.RNA-Seq.S14_L004_R1.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R1_001.fastq.gz 4822180343 FASTQ S14_L004_R1 unaligned CPTAC3 a55f0bfd-eb7d-40d3-864a-dc8c6831a87d b5dd0b7dced9a6a7e6c1087827eb639b {"aliquot_tag": "ALQ_402e851d", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02175.RNA-Seq.S14_L004_R2.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R2_001.fastq.gz 4808988017 FASTQ S14_L004_R2 unaligned CPTAC3 c95e7cc3-6d00-4afc-8981-c0b140015d31 3798258741223f60fa284741b8cf23d1 {"aliquot_tag": "ALQ_402e851d", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02175.RNA-Seq.transcriptome.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.transcriptome.gdc_realn.bam 10911565485 BAM transcriptome harmonized CPTAC3 cb9da0e6-3367-4780-987e-7bc9389223a2 d7f1adbaa6d53735236edb9abe8f0888 {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor"} -C3L-02175.WGS.N C3L-02175 CCRCC WGS blood_normal CPT0101930002 CPT0101930002.WholeGenome.RP-1303.bam 66291160337 BAM aligned CPTAC3 fb934f0d-1915-4149-a67d-0bdd65fa6cb9 6fe20d0bc233be67453ec96e7496e725 {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02175.WGS.N.hg38 C3L-02175 CCRCC WGS blood_normal CPT0101930002 6eadb488-015f-427c-8194-9709dff9facf_wgs_gdc_realn.bam 97648522008 BAM harmonized CPTAC3 0bff2363-4079-4835-9e0b-b698ece29edc cc0bfa8286f89a57eaa398108812d0cc {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02175.WXS.N C3L-02175 CCRCC WXS blood_normal CPT0101930002 CPT0101930002.WholeExome.RP-1303.bam 30616433475 BAM aligned CPTAC3 d5784d20-2151-473f-8e4c-b7bf553217d3 4d1e45f9e7c6157fcafff0a3ef3b35f1 {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02175.WXS.N.hg38 C3L-02175 CCRCC WXS blood_normal CPT0101930002 6eadb488-015f-427c-8194-9709dff9facf_wxs_gdc_realn.bam 42288858151 BAM harmonized CPTAC3 f6570ece-999f-4dcf-9dbe-253a821240af 1a9135e7ef877997486b1ccc48b8bec1 {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02176.MethArray.Green.T C3L-02176 CCRCC Methylation_Array tumor CPT0100470008 202234380054_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f9d464ef-b36a-445e-b213-fe57694e7402 d651258b3eba58c29159d45008ed2490 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor"} -C3L-02176.MethArray.Red.T C3L-02176 CCRCC Methylation_Array tumor CPT0100470008 202234380054_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 cc4a846f-04a4-444b-9cae-bb1be625df4a e1c577bfeda95a839efbcd5a6ac6a2ea {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor"} -C3L-02176.miRNA-Seq.S15_L003_R1.T C3L-02176 CCRCC miRNA-Seq tumor CPT0100470006 181113_UNC31-K00269_0164_AH23NNBBXY_CTATAC_S15_L003_R1_001.unaln.bam 214036121 BAM S15_L003_R1 unaligned CPTAC3 684b9f05-6909-4722-b949-311d3181b02b a47ce2109376b9d19ae2e0c6c215912c {"aliquot_tag": "ALQ_cf6e70bd", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02176.miRNA-Seq.T.hg38 C3L-02176 CCRCC miRNA-Seq tumor CPT0100470006 e872156b-b366-40ee-a67f-4b32e683c9bf_mirnaseq_gdc_realn.bam 239330077 BAM harmonized CPTAC3 c2bbee26-d13f-4f92-a5cb-7a69ee5a4794 1ae7bce648c1ed7910ac1eb3d47b4f3b {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor"} -C3L-02176.RNA-Seq.chimeric.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.chimeric.gdc_realn.bam 32339747 BAM chimeric harmonized CPTAC3 97f83ac9-5697-4ebe-91ba-4b53e804d0aa 9e8c307736c5961141e3f0da8f49de0d {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor"} -C3L-02176.RNA-Seq.genomic.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.genomic.gdc_realn.bam 8017020939 BAM genomic harmonized CPTAC3 f80c5f20-c1cc-461f-95d1-8ead846569e9 62e703b15408e2b139172d516037e51f {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor"} -C3L-02176.RNA-Seq.S50_L004_R1.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R1_001.fastq.gz 3549869748 FASTQ S50_L004_R1 unaligned CPTAC3 8712fe93-5cf8-4ec7-b40c-20bf98353c10 96fd353b46a1bf4aaec0fdca334bb183 {"aliquot_tag": "ALQ_cf6e70bd", "sample": "S50", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02176.RNA-Seq.S50_L004_R2.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R2_001.fastq.gz 3972882380 FASTQ S50_L004_R2 unaligned CPTAC3 0bfd42d4-ffc2-4c4a-afbd-1563f26bccde bf10e05cf8bb9f62075f824528b7bf84 {"aliquot_tag": "ALQ_cf6e70bd", "sample": "S50", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02176.RNA-Seq.transcriptome.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.transcriptome.gdc_realn.bam 9343692038 BAM transcriptome harmonized CPTAC3 abac7ec3-b3e8-443d-8e34-54e90e3dd8ec cd5b8f0317133f634948d23db4f3861a {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor"} -C3L-02176.WGS.N C3L-02176 CCRCC WGS blood_normal CPT0101950002 CPT0101950002.WholeGenome.RP-1303.bam 57885119134 BAM aligned CPTAC3 9641d242-e578-4f6f-9a30-c2c146ed7978 87e1cdd63c83ca6f9831321a8bcd5e19 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02176.WGS.N.hg38 C3L-02176 CCRCC WGS blood_normal CPT0101950002 253aadb4-5232-451d-a462-01613fba4d1e_wgs_gdc_realn.bam 86587170323 BAM harmonized CPTAC3 70a3d096-9863-4512-9f0b-667497ec80bf 6d2ad9b8b321dba94023ddb9ee4b4252 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02176.WGS.T C3L-02176 CCRCC WGS tumor CPT0100470008 CPT0100470008.WholeGenome.RP-1303.bam 57195549071 BAM aligned CPTAC3 8df40608-e700-469f-9590-e29f69910d69 fcb416c9d18370e5d0b90e11eddcf49a {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor"} -C3L-02176.WGS.T.hg38 C3L-02176 CCRCC WGS tumor CPT0100470008 f346b738-521a-4175-b152-5558f6ceb49a_wgs_gdc_realn.bam 83232025224 BAM harmonized CPTAC3 2226fc8b-e959-47a8-be94-3d45ede5cb18 2861775709751dc2f3cce270479d8937 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor"} -C3L-02176.WXS.A C3L-02176 CCRCC WXS tissue_normal CPT0100480006 CPT0100480006.WholeExome.RP-1303.bam 30546668313 BAM aligned CPTAC3 9aecfeae-df23-4de1-866a-40486d21f055 1a74b01d8654e845dc06c9d09cc7ab0d {"aliquot_tag": "ALQ_4d3ee76c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02176.WXS.A.hg38 C3L-02176 CCRCC WXS tissue_normal CPT0100480006 5ff28829-2091-4dd9-925e-4572fdff3c6a_wxs_gdc_realn.bam 40897067911 BAM harmonized CPTAC3 a3c2600d-f1ab-41ef-86a1-9a3c0c6f7a92 2638d2c769ce193472ace9eb105e7604 {"aliquot_tag": "ALQ_4d3ee76c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02176.WXS.N C3L-02176 CCRCC WXS blood_normal CPT0101950002 CPT0101950002.WholeExome.RP-1303.bam 28946281749 BAM aligned CPTAC3 324ed109-b926-4c98-bea6-95f4d2a90d58 b992fe2e2eaa53691a05f02ba0dcd967 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02176.WXS.N.hg38 C3L-02176 CCRCC WXS blood_normal CPT0101950002 253aadb4-5232-451d-a462-01613fba4d1e_wxs_gdc_realn.bam 39645855017 BAM harmonized CPTAC3 4fc4844f-5981-437e-8e99-0d4fe32a83f2 c5f4c9070e1c86915c82a36e9c106ea9 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02176.WXS.T C3L-02176 CCRCC WXS tumor CPT0100470008 CPT0100470008.WholeExome.RP-1303.bam 29718114090 BAM aligned CPTAC3 3771adf9-9196-491a-b657-c7ae598dce43 b9ad8350b4779ac01cb3f454c5eb10b1 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor"} -C3L-02176.WXS.T.hg38 C3L-02176 CCRCC WXS tumor CPT0100470008 f346b738-521a-4175-b152-5558f6ceb49a_wxs_gdc_realn.bam 41341132428 BAM harmonized CPTAC3 92e35959-96d6-49e7-8a5b-3905f2eb879d c187f96a01ecda1946d892878b42de86 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor"} -C3L-02177.MethArray.Green.T C3L-02177 CCRCC Methylation_Array tumor CPT0100530009 202234370091_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fe50b343-c8b6-4f25-8b1e-efd8ebcd72eb 9cb159db8d1ba1e6d065131f821dcee2 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor"} -C3L-02177.MethArray.Red.T C3L-02177 CCRCC Methylation_Array tumor CPT0100530009 202234370091_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 a647bcd1-b702-49f1-b777-dd5b2b6f1e6d 2f2b856b39ab5fb93cf4a107b04417b2 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor"} -C3L-02177.miRNA-Seq.S27_L003_R1.T C3L-02177 CCRCC miRNA-Seq tumor CPT0100530006 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L003_R1_001.unaln.bam 205819376 BAM S27_L003_R1 unaligned CPTAC3 ec3b97f8-cd3b-4c35-9758-e4ff4f835983 71dfc078966c96bb36cf6108e2dab20c {"aliquot_tag": "ALQ_f1b205d8", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02177.miRNA-Seq.T.hg38 C3L-02177 CCRCC miRNA-Seq tumor CPT0100530006 fed580bd-5c46-4073-9529-cd8ead32c810_mirnaseq_gdc_realn.bam 234719866 BAM harmonized CPTAC3 186368ed-7e09-4bdb-b449-cf897c6baa1e f2fa6bb34de6bc070eb5c3c388da1b18 {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor"} -C3L-02177.RNA-Seq.chimeric.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.chimeric.gdc_realn.bam 33808724 BAM chimeric harmonized CPTAC3 9d78829a-429b-4775-9c33-46195c961a82 d3906fd5f78a429f6ffb9b8834f02796 {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor"} -C3L-02177.RNA-Seq.genomic.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.genomic.gdc_realn.bam 8065071777 BAM genomic harmonized CPTAC3 062746ad-2f79-4fa1-b5b0-178328997af2 613bbc04c20308f2b38ee5bff9737552 {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor"} -C3L-02177.RNA-Seq.S5_L008_R1.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3685570714 FASTQ S5_L008_R1 unaligned CPTAC3 5961026c-04cc-479b-b1e7-1dff75f36632 c085175f3a3cb46d6f10321d752c13d3 {"aliquot_tag": "ALQ_f1b205d8", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02177.RNA-Seq.S5_L008_R2.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4080658191 FASTQ S5_L008_R2 unaligned CPTAC3 1c3e2265-25d0-4deb-91e8-d4928530236f 29a5a5a4fcd9e2f7b0e0dfb223fb33c8 {"aliquot_tag": "ALQ_f1b205d8", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02177.RNA-Seq.transcriptome.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.transcriptome.gdc_realn.bam 9430415823 BAM transcriptome harmonized CPTAC3 9038519b-05df-477c-986b-a06883811925 97619d583c495c4b85222b07fdffc5da {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor"} -C3L-02177.WGS.N C3L-02177 CCRCC WGS blood_normal CPT0101970002 CPT0101970002.WholeGenome.RP-1303.bam 61747006129 BAM aligned CPTAC3 1ff26dea-ec82-4481-85c7-98c2d485e42b 0809c09de129c05861b6b19b4fb920fb {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02177.WGS.N.hg38 C3L-02177 CCRCC WGS blood_normal CPT0101970002 d739a74a-bbf9-4d85-9e12-e0962e2281f1_wgs_gdc_realn.bam 90415050012 BAM harmonized CPTAC3 3ca01194-5dfe-4e29-94c2-c3f5c44c4610 2628bf8bc2d78ddb0838ea4fc47126c8 {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02177.WGS.T C3L-02177 CCRCC WGS tumor CPT0100530009 CPT0100530009.WholeGenome.RP-1303.bam 57470620882 BAM aligned CPTAC3 f001beca-976b-4369-8f3b-be7eec21d015 033f04bae4260bb4504df3a4d54ddd84 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor"} -C3L-02177.WGS.T.hg38 C3L-02177 CCRCC WGS tumor CPT0100530009 0569b3d0-f9e3-4e5d-9277-08f5f3ba29db_wgs_gdc_realn.bam 84712398835 BAM harmonized CPTAC3 737fa359-5f39-4a63-b758-58dd5dcdfb4b 314db74478701fba89f7249bc6ca833c {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor"} -C3L-02177.WXS.N C3L-02177 CCRCC WXS blood_normal CPT0101970002 CPT0101970002.WholeExome.RP-1303.bam 34559551446 BAM aligned CPTAC3 c4c799c2-5e48-470e-b699-446cbf3c3422 5139d129e90e4d1d8b7388a0a1dc86d6 {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02177.WXS.N.hg38 C3L-02177 CCRCC WXS blood_normal CPT0101970002 d739a74a-bbf9-4d85-9e12-e0962e2281f1_wxs_gdc_realn.bam 47813535593 BAM harmonized CPTAC3 21a329eb-4038-4a1c-8baa-2aaf7696f8b0 3cbf70c17e59cc5a95c2b1287579aa86 {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02177.WXS.T C3L-02177 CCRCC WXS tumor CPT0100530009 CPT0100530009.WholeExome.RP-1303.bam 36330828928 BAM aligned CPTAC3 e1c17823-1d4a-4e18-b553-af495a804cba d86a997677cd922ee8514c5cc2e68958 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor"} -C3L-02177.WXS.T.hg38 C3L-02177 CCRCC WXS tumor CPT0100530009 0569b3d0-f9e3-4e5d-9277-08f5f3ba29db_wxs_gdc_realn.bam 50053229731 BAM harmonized CPTAC3 24481ed3-de0c-4b91-bfd8-a81e9ff0870e e9add5952e497e45a30aecd339b119d5 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor"} -C3L-02179.MethArray.Green.T C3L-02179 CCRCC Methylation_Array tumor CPT0389320006 205555390157_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 41ff0c69-78c8-4563-9259-ab499263857f 15cf4647d7995f13da014f4c08cd1dd6 {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor"} -C3L-02179.MethArray.Red.T C3L-02179 CCRCC Methylation_Array tumor CPT0389320006 205555390157_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 cabeb903-d62a-4c71-bddb-34f45bcb2a52 53174b8812593391a5dd3439c91f4eef {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor"} -C3L-02179.miRNA-Seq.S12_L001_R1.T C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GAGTGG_S12_L001_R1_001.unaln.bam 281561978 BAM S12_L001_R1 unaligned CPTAC3 89414fb0-cdab-420d-ac73-a444d66e1a03 a7273f923d450ff4277e02cc2b5065ba {"aliquot_tag": "ALQ_e2bfa404", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02179.miRNA-Seq.T.hg38 C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 8039278d-0564-4bd6-873c-4d1a14f0bc1f_mirnaseq_gdc_realn.bam 301360244 BAM harmonized CPTAC3 eb329e45-1460-4b24-88c1-7c9045b26e9b 9abb040b2ab297f3370de6a1d370b7da {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor"} -C3L-02179.RNA-Seq.chimeric.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.chimeric.gdc_realn.bam 310360652 BAM chimeric harmonized CPTAC3 9db60182-1f59-4dea-a415-36526d796640 a959cebd20d075074b10edb90f7466f7 {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor"} -C3L-02179.RNA-Seq.genomic.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.genomic.gdc_realn.bam 9170864242 BAM genomic harmonized CPTAC3 a66714f3-9766-4055-b289-f18edcc668c7 4e856ae0bf0b3cdc88b5bef01865fd61 {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor"} -C3L-02179.RNA-Seq.S15_L004_R1.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 4325578436 FASTQ S15_L004_R1 unaligned CPTAC3 291d9ec6-e718-475c-9115-aa9e7a13f309 07972d3b26f5d6aa8c85025051ad71d8 {"aliquot_tag": "ALQ_e2bfa404", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02179.RNA-Seq.S15_L004_R2.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 4818831598 FASTQ S15_L004_R2 unaligned CPTAC3 0798efc6-6a07-47da-9b5e-36bb40d30086 f5735a0009252d14e8a3a384787b5ccd {"aliquot_tag": "ALQ_e2bfa404", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02179.RNA-Seq.transcriptome.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.transcriptome.gdc_realn.bam 13191602594 BAM transcriptome harmonized CPTAC3 009d53c3-00d7-44cd-b87d-7be713c1f408 8cf0358abb796d482953cc4754ad9f92 {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor"} -C3L-02179.WGS.N C3L-02179 CCRCC WGS blood_normal CPT0389350002 CPT0389350002.WholeGenome.RP-2158.bam 22779104205 BAM aligned CPTAC3 2ab17a16-391c-4218-b343-67d251a3e3a2 2be1443e6c30addfe2d6ccb6af9fac0c {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02179.WGS.N.hg38 C3L-02179 CCRCC WGS blood_normal CPT0389350002 aec2bb59-3129-4c35-ae5c-0cf7d469dc5d_wgs_gdc_realn.bam 68567939964 BAM harmonized CPTAC3 2b8dad30-f19f-453b-8608-b518ad4c42af f9e408753a0d4a8248fb6830e6b4b5ee {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02179.WGS.T C3L-02179 CCRCC WGS tumor CPT0389320006 CPT0389320006.WholeGenome.RP-2158.bam 28943946031 BAM aligned CPTAC3 d170c5e9-0ca9-46ad-8d9a-84dc73b1fa65 b9a0ebe562818f7c536e826f1879c5be {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor"} -C3L-02179.WGS.T.hg38 C3L-02179 CCRCC WGS tumor CPT0389320006 b98cba65-1fbf-468e-bb65-d613601a14d8_wgs_gdc_realn.bam 84884110363 BAM harmonized CPTAC3 2fa8b12c-4bcb-4913-bac9-e24a99c0e7ff c62ae815291ff8a87de71e86fa796d4e {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor"} -C3L-02179.WXS.N C3L-02179 CCRCC WXS blood_normal CPT0389350002 CPT0389350002.WholeExome.RP-1303.bam 22387851186 BAM aligned CPTAC3 e9f8d11d-499b-4edb-b5ae-6d2a9aa0a235 c1de8258b192529ec0ee00b65fe48ed2 {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02179.WXS.N.hg38 C3L-02179 CCRCC WXS blood_normal CPT0389350002 aec2bb59-3129-4c35-ae5c-0cf7d469dc5d_wxs_gdc_realn.bam 30792973959 BAM harmonized CPTAC3 70dabd82-7033-4878-a3e3-4c357e1271df 9bc80c0405e939fe6fec2c95101a7d8a {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02179.WXS.T C3L-02179 CCRCC WXS tumor CPT0389320006 CPT0389320006.WholeExome.RP-1303.bam 19586402059 BAM aligned CPTAC3 6c498427-a089-414f-ac94-5d7874762bfb 5b9c96d172bbfb1f96a949624bd5d0b4 {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor"} -C3L-02179.WXS.T.hg38 C3L-02179 CCRCC WXS tumor CPT0389320006 b98cba65-1fbf-468e-bb65-d613601a14d8_wxs_gdc_realn.bam 26901144711 BAM harmonized CPTAC3 b1047446-356b-4ef5-9531-10a8c6fd90d4 2e671a571888d1028b68d40677061acf {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor"} -C3L-02201.MethArray.Green.T C3L-02201 CCRCC Methylation_Array tumor CPT0127800006 203219640158_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4db78177-6e0b-4fac-9100-ab3646e5ae89 5211a8b7b9c838e29f64dd7e9621724a {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor"} -C3L-02201.MethArray.Red.T C3L-02201 CCRCC Methylation_Array tumor CPT0127800006 203219640158_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 01bdca6d-71c6-44e7-b25b-f4223d6edeca 3b2baf6f9d5254be3685f38453df24bd {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor"} -C3L-02201.miRNA-Seq.S2_L004_R1.T C3L-02201 CCRCC miRNA-Seq tumor CPT0127800009 190108_UNC31-K00269_0176_AHYGLVBBXX_CGATGT_S2_L004_R1_001.unaln.bam 253313343 BAM S2_L004_R1 unaligned CPTAC3 faec1d79-ad67-417a-b108-2da0b04b46b0 23a8059b85c398a27546041c5a23420a {"aliquot_tag": "ALQ_1db148b4", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02201.miRNA-Seq.T.hg38 C3L-02201 CCRCC miRNA-Seq tumor CPT0127800009 b5319943-3ea9-43df-8625-f4b437c8b42b_mirnaseq_gdc_realn.bam 281376760 BAM harmonized CPTAC3 007daca6-312a-48b7-8752-a24a4035fb4b f361c5f46d0d7a7b57479aa6c920e9a8 {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor"} -C3L-02201.RNA-Seq.chimeric.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.chimeric.gdc_realn.bam 192606932 BAM chimeric harmonized CPTAC3 9e1366a5-fd83-4c81-ad38-262c63bf87df 672e6eb0017bb78ffe12cdde1cf3c402 {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor"} -C3L-02201.RNA-Seq.genomic.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.genomic.gdc_realn.bam 9527776992 BAM genomic harmonized CPTAC3 dc28f02c-6cdf-4fa7-8f3f-1e9077ca3794 e543698d5d630b9fcd4fa33b8423b99b {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor"} -C3L-02201.RNA-Seq.S6_L003_R1.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R1_001.fastq.gz 4443227448 FASTQ S6_L003_R1 unaligned CPTAC3 2d6f17fe-6cc0-41b4-be1c-63c075b6fd28 7d179a7442aa109bb60ca29cfa02b0ce {"aliquot_tag": "ALQ_1db148b4", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02201.RNA-Seq.S6_L003_R2.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R2_001.fastq.gz 4803673521 FASTQ S6_L003_R2 unaligned CPTAC3 e0c70400-9aca-4795-8a1f-805f1956a943 7440500c12c5b6e495f6fcdb74c60bf9 {"aliquot_tag": "ALQ_1db148b4", "sample": "S6", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02201.RNA-Seq.transcriptome.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.transcriptome.gdc_realn.bam 11573340357 BAM transcriptome harmonized CPTAC3 23d9efd5-ea84-436f-ae00-0940c37ce3f2 1320a1be0142c76a8da4623546407862 {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor"} -C3L-02201.WGS.N C3L-02201 CCRCC WGS blood_normal CPT0126610002 CPT0126610002.WholeGenome.RP-1303.bam 56953536310 BAM aligned CPTAC3 ff717f62-5e61-476b-88c8-6c939879dfa9 439f63d63338d63b11f62b12e364ec1f {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal"} -C3L-02201.WGS.N.hg38 C3L-02201 CCRCC WGS blood_normal CPT0126610002 6da8e509-63ab-4fbb-b44c-3ec96c0ef66b_wgs_gdc_realn.bam 82260301691 BAM harmonized CPTAC3 6d3096e0-f7a4-4ed7-aa13-60a0cbc537c2 f6a8230d2357f683b4f49dda721210a9 {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal"} -C3L-02201.WGS.T C3L-02201 CCRCC WGS tumor CPT0127800006 CPT0127800006.WholeGenome.RP-1303.bam 59264812104 BAM aligned CPTAC3 3ab146ac-51ba-4984-9b23-a44a634c4694 e920bdc0c8f09a2c4a2c03547adc794e {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor"} -C3L-02201.WGS.T.hg38 C3L-02201 CCRCC WGS tumor CPT0127800006 408a5b5c-c66e-4c7f-8584-0e853e7b9416_wgs_gdc_realn.bam 85287278995 BAM harmonized CPTAC3 4b0752a0-f65f-402c-baa9-3a987f5313c2 7a3a3a1250fe52004a26d9c2349e15b2 {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor"} -C3L-02201.WXS.N C3L-02201 CCRCC WXS blood_normal CPT0126610002 CPT0126610002.WholeExome.RP-1303.bam 24354628609 BAM aligned CPTAC3 cf7c8556-91f9-4b0a-82ab-2ac46b0ed021 11fdf696c6be5c1598ffb923de5a30ad {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal"} -C3L-02201.WXS.N.hg38 C3L-02201 CCRCC WXS blood_normal CPT0126610002 6da8e509-63ab-4fbb-b44c-3ec96c0ef66b_wxs_gdc_realn.bam 33405566148 BAM harmonized CPTAC3 75bc8316-3de2-4976-87c7-6f3970e00c80 7700075743ea68f92bbad698ba121d75 {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal"} -C3L-02201.WXS.T C3L-02201 CCRCC WXS tumor CPT0127800006 CPT0127800006.WholeExome.RP-1303.bam 17969166484 BAM aligned CPTAC3 a9aeed83-77f3-4ef7-8d94-8585efe926cd f7056842b4229836145b78747a9720e3 {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor"} -C3L-02201.WXS.T.hg38 C3L-02201 CCRCC WXS tumor CPT0127800006 408a5b5c-c66e-4c7f-8584-0e853e7b9416_wxs_gdc_realn.bam 25276326022 BAM harmonized CPTAC3 e69f124b-43eb-4fa4-85d6-f5d1002fd5e5 473981ccb9cd45b25a68b2e47874c4e1 {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor"} -C3L-02202.MethArray.Green.T C3L-02202 CCRCC Methylation_Array tumor CPT0203350005 203219650100_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4ce9be37-bb03-4ada-a5c2-96cd90e65b72 72db71b8bf2c581ca6a26d44ecc88bd0 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor"} -C3L-02202.MethArray.Red.T C3L-02202 CCRCC Methylation_Array tumor CPT0203350005 203219650100_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 adde3343-0e83-437b-9996-c948f93f19e2 e605514bad6293f9e8f21446d279d46e {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor"} -C3L-02202.miRNA-Seq.S20_L008_R1.T C3L-02202 CCRCC miRNA-Seq tumor CPT0203350008 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L008_R1_001.unaln.bam 289794974 BAM S20_L008_R1 unaligned CPTAC3 fe9c62e1-945e-4891-ab2a-1c5200401a5d 80d0d24afc94abfa2471d4e42ed906e8 {"aliquot_tag": "ALQ_4776183a", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02202.miRNA-Seq.T.hg38 C3L-02202 CCRCC miRNA-Seq tumor CPT0203350008 7acd45d4-8622-4760-8485-8f64b70b208c_mirnaseq_gdc_realn.bam 317389769 BAM harmonized CPTAC3 9f38c715-0f67-4270-8a73-6d2ba9085614 955b9d62d17947c20536d61fe809b773 {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor"} -C3L-02202.RNA-Seq.chimeric.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.chimeric.gdc_realn.bam 268473856 BAM chimeric harmonized CPTAC3 ab5e61a5-54e1-456e-bf85-24e848f3b144 0a11e2507629942b9c31afb1f38b9080 {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor"} -C3L-02202.RNA-Seq.genomic.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.genomic.gdc_realn.bam 6858783039 BAM genomic harmonized CPTAC3 23691684-c6c1-4265-a9d8-c3c98555bf44 1b0fb4b0cd896fc6a2f86044b8fe0d5f {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor"} -C3L-02202.RNA-Seq.S7_L002_R1.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 3029062493 FASTQ S7_L002_R1 unaligned CPTAC3 0bc2b024-6b9a-4d91-9774-e4078cce9516 a959e65064a0f7856cafe35393dc9202 {"aliquot_tag": "ALQ_4776183a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02202.RNA-Seq.S7_L002_R2.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 3258073023 FASTQ S7_L002_R2 unaligned CPTAC3 31ca8c25-f05d-4f44-a33e-5fec114f829c b4b998a41ad433bc4966b5eca135ba06 {"aliquot_tag": "ALQ_4776183a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02202.RNA-Seq.transcriptome.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.transcriptome.gdc_realn.bam 8139950475 BAM transcriptome harmonized CPTAC3 7eeb5ad0-a30b-42e8-b0ea-8a9ec9ad28a2 dd47ff0c33220f0d7540f03ac2382083 {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor"} -C3L-02202.WGS.N C3L-02202 CCRCC WGS blood_normal CPT0204040002 CPT0204040002.WholeGenome.RP-1303.bam 57723313154 BAM aligned CPTAC3 517538fb-689f-4927-83a8-ac13f29e16c6 ee8a5ae7f15ab1e10d0e93a2e1e3bfce {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02202.WGS.N.hg38 C3L-02202 CCRCC WGS blood_normal CPT0204040002 5ad2dbd0-a413-4315-afa2-79dabea873d5_wgs_gdc_realn.bam 84026758125 BAM harmonized CPTAC3 983b75f2-1780-48f3-8bfe-f0d5ef100ac1 707fe7286e44488b9ed930d30b16910d {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02202.WGS.T C3L-02202 CCRCC WGS tumor CPT0203350005 CPT0203350005.WholeGenome.RP-1303.bam 65667720093 BAM aligned CPTAC3 ba430f00-a13b-48f5-9f48-f31d2fca0699 b057e9648e19a58275e5a5a3f2bba2f4 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor"} -C3L-02202.WGS.T.hg38 C3L-02202 CCRCC WGS tumor CPT0203350005 9423a87f-334a-44de-bfe1-441aa39f3f44_wgs_gdc_realn.bam 95470524059 BAM harmonized CPTAC3 e5b16677-88a5-404e-87d2-c42a3efea1c9 c82bdbba92e1df880dbf4c9ca77a22b9 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor"} -C3L-02202.WXS.N C3L-02202 CCRCC WXS blood_normal CPT0204040002 CPT0204040002.WholeExome.RP-1303.bam 24814702271 BAM aligned CPTAC3 674ae3ce-db9a-4d2c-a88b-5498dbc609a8 34f22162a8f243322e0337bdd1e78308 {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02202.WXS.N.hg38 C3L-02202 CCRCC WXS blood_normal CPT0204040002 5ad2dbd0-a413-4315-afa2-79dabea873d5_wxs_gdc_realn.bam 34438427159 BAM harmonized CPTAC3 7323030a-fdcb-425d-9b58-f0bec8f1fab1 af719231a584fa27f002ad808584d4a2 {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02202.WXS.T C3L-02202 CCRCC WXS tumor CPT0203350005 CPT0203350005.WholeExome.RP-1303.bam 34012797765 BAM aligned CPTAC3 dfaf4721-778f-499a-8d4a-21c60013d5ad e52935010c0e24fafe73980a42da9914 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor"} -C3L-02202.WXS.T.hg38 C3L-02202 CCRCC WXS tumor CPT0203350005 9423a87f-334a-44de-bfe1-441aa39f3f44_wxs_gdc_realn.bam 46883492557 BAM harmonized CPTAC3 e91648a7-d15b-43d9-bd18-57c3e8d76b4a db11365dfb4eb9f3a2e633414c7a55c2 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor"} -C3L-02204.miRNA-Seq.A.hg38 C3L-02204 CCRCC miRNA-Seq tissue_normal CPT0389380005 2add5dae-4071-4259-8980-d700ebdfebdb_mirnaseq_gdc_realn.bam 411492806 BAM harmonized CPTAC3 0b327fad-0d37-4c61-aa81-cfa3359ececf a63964dfd779b62a1f2d0ee391b6c329 {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02204.miRNA-Seq.S14_L001_R1.T C3L-02204 CCRCC miRNA-Seq tumor CPT0389370009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GGTAGC_S14_L001_R1_001.unaln.bam 208289890 BAM S14_L001_R1 unaligned CPTAC3 9bc1ede8-91c8-4def-8af7-c468e5207498 c226d9a642914c503adfe6ae83d5f915 {"aliquot_tag": "ALQ_2a5f2b74", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02204.miRNA-Seq.S27_L002_R1.A C3L-02204 CCRCC miRNA-Seq tissue_normal CPT0389380005 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGGAAT_S27_L002_R1_001.unaln.bam 379656866 BAM S27_L002_R1 unaligned CPTAC3 8b7dd906-5f60-42fb-b2e3-86b671bf538e 9c65b836d58432ddbc8b24bea4333c8b {"aliquot_tag": "ALQ_a1b9f08e", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02204.miRNA-Seq.T.hg38 C3L-02204 CCRCC miRNA-Seq tumor CPT0389370009 4998d68d-32cd-4463-9559-8169098a565e_mirnaseq_gdc_realn.bam 218224636 BAM harmonized CPTAC3 488d2dca-2860-4509-9fa8-2f5e9b13eb8e b5d5926024b691d60a95a030a4b45041 {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor"} -C3L-02204.RNA-Seq.chimeric.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.chimeric.gdc_realn.bam 202900843 BAM chimeric harmonized CPTAC3 8dfa11cd-7a30-41a2-bf9d-6db5f5f06a42 de95b58f6553899fd36642a01c24face {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02204.RNA-Seq.chimeric.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.chimeric.gdc_realn.bam 155571470 BAM chimeric harmonized CPTAC3 5dc17ef4-78ef-4de3-a240-fff5b9dbdda2 5b772d0fb620b785e6cdcf256c0fd05d {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor"} -C3L-02204.RNA-Seq.genomic.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.genomic.gdc_realn.bam 7539358618 BAM genomic harmonized CPTAC3 09a9d005-3ea4-471a-ba24-4fd9801e8643 a18b8b8611d8e72cf26101ff7b06610a {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02204.RNA-Seq.genomic.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.genomic.gdc_realn.bam 8236782005 BAM genomic harmonized CPTAC3 75d00f8d-0d14-424c-bdc3-b77c93b5cb00 741d778d68f8953acc3e8b00ca31c0af {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor"} -C3L-02204.RNA-Seq.S14_L004_R1.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R1_001.fastq.gz 3921044191 FASTQ S14_L004_R1 unaligned CPTAC3 458b1ced-ecc6-4d7a-a162-e5985bd3a4f3 9983ee4b54438c7d188765e952ae6775 {"aliquot_tag": "ALQ_2a5f2b74", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02204.RNA-Seq.S14_L004_R2.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R2_001.fastq.gz 4426630672 FASTQ S14_L004_R2 unaligned CPTAC3 e12fd904-3826-45f6-9a89-3cd147f310de d5abd2f512aec4aa0568d32d8d86784f {"aliquot_tag": "ALQ_2a5f2b74", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02204.RNA-Seq.S29_L008_R1.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3417366481 FASTQ S29_L008_R1 unaligned CPTAC3 1215dd59-35d8-4df7-8d6f-81c77ad6c1c2 787a9f393752174c5b3b22bfc396fa0a {"aliquot_tag": "ALQ_a1b9f08e", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02204.RNA-Seq.S29_L008_R2.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3983724232 FASTQ S29_L008_R2 unaligned CPTAC3 f858fdc6-a4fa-49f6-ad94-9484d7bf2d80 258b89ea1bcfb027affef460c6dc53d7 {"aliquot_tag": "ALQ_a1b9f08e", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02204.RNA-Seq.transcriptome.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.transcriptome.gdc_realn.bam 9065357859 BAM transcriptome harmonized CPTAC3 03bcb054-65bf-48d2-a057-94c5486f65e7 983f82cc031bbfc8edf6a302a03dee9c {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02204.RNA-Seq.transcriptome.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.transcriptome.gdc_realn.bam 11309255325 BAM transcriptome harmonized CPTAC3 ba7e3e96-818b-4342-a15a-ee1d07c740dd c68bd7963425c864152a153518ca0460 {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor"} -C3L-02204.WGS.N C3L-02204 CCRCC WGS blood_normal CPT0389430002 CPT0389430002.WholeGenome.RP-2158.bam 28208508198 BAM aligned CPTAC3 da31d0eb-28b3-422e-880c-71ce48e563d4 c9be2f205ce2726ae53fcd7cdc027880 {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal"} -C3L-02204.WGS.N.hg38 C3L-02204 CCRCC WGS blood_normal CPT0389430002 e5c861cd-f3bf-47bf-9a9f-6513ae52f5b2_wgs_gdc_realn.bam 86396963412 BAM harmonized CPTAC3 d1948431-f679-41a0-8720-1a200b755448 62af9f21dcd1e0e88edb07c6840fb419 {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal"} -C3L-02204.WGS.T C3L-02204 CCRCC WGS tumor CPT0389370006 CPT0389370006.WholeGenome.RP-2158.bam 24528002030 BAM aligned CPTAC3 7753385e-7c08-420e-b379-ee8fcfda5601 d5300056c34b558d0bbebaa6eb4e80cc {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor"} -C3L-02204.WGS.T.hg38 C3L-02204 CCRCC WGS tumor CPT0389370006 b3f7c849-7e1c-48b6-9d0a-1fc1e1d36d5e_wgs_gdc_realn.bam 73938478998 BAM harmonized CPTAC3 e3d7e2c5-52cb-4b4c-b678-6c6946bc7acc b04b1a00803dc4194be4155f7dbd69b7 {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor"} -C3L-02204.WXS.N C3L-02204 CCRCC WXS blood_normal CPT0389430002 CPT0389430002.WholeExome.RP-1303.bam 25281058829 BAM aligned CPTAC3 c3fd456b-5d6a-48a0-8e76-e8ffe3a4b330 01e9f8e922bf0af8dbed68e8a32ef4ab {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal"} -C3L-02204.WXS.N.hg38 C3L-02204 CCRCC WXS blood_normal CPT0389430002 e5c861cd-f3bf-47bf-9a9f-6513ae52f5b2_wxs_gdc_realn.bam 34908838410 BAM harmonized CPTAC3 40e5969d-be88-4517-a82e-6edaa36745b7 736c3f03d89ca4977879b89527443974 {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal"} -C3L-02204.WXS.T C3L-02204 CCRCC WXS tumor CPT0389370006 CPT0389370006.WholeExome.RP-1303.bam 30754089845 BAM aligned CPTAC3 6835f8c5-0a43-4b5a-bdde-4093f65b5751 2e6f06552091734052cc0f2b579fa07b {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor"} -C3L-02204.WXS.T.hg38 C3L-02204 CCRCC WXS tumor CPT0389370006 b3f7c849-7e1c-48b6-9d0a-1fc1e1d36d5e_wxs_gdc_realn.bam 42899552367 BAM harmonized CPTAC3 c9695364-4619-42ac-9c27-bb8624cc44eb 99c55b822b711e9bfacc85c10829428e {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor"} -C3L-02208.MethArray.Green.T C3L-02208 CCRCC Methylation_Array tumor CPT0171890011 203219640160_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0fcf2422-53d3-4cfb-bf57-b9fd6756e56e 6b958b82b1757e1e2129301cd0114507 {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor"} -C3L-02208.MethArray.Red.T C3L-02208 CCRCC Methylation_Array tumor CPT0171890011 203219640160_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b31528d-96d5-4e5f-8047-855dc3400eda a358cd01d22a8ccb0fc434cb3bc0ed83 {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor"} -C3L-02208.miRNA-Seq.A.hg38 C3L-02208 CCRCC miRNA-Seq tissue_normal CPT0171900006 45f3f999-f4ba-4128-b51c-78d94505154e_mirnaseq_gdc_realn.bam 300880929 BAM harmonized CPTAC3 5387f5ad-fba7-43bd-addc-bcec05b207f3 1d6afa96d3919adc92c2af93f585939e {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02208.miRNA-Seq.S16_L002_R1.A C3L-02208 CCRCC miRNA-Seq tissue_normal CPT0171900006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGTCA_S16_L002_R1_001.unaln.bam 277801776 BAM S16_L002_R1 unaligned CPTAC3 450c632d-09b9-408f-a7d1-b186142c3573 e3394caf73429e875fafc32c45f74589 {"aliquot_tag": "ALQ_6d62bdde", "sample": "S16", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02208.miRNA-Seq.S21_L004_R1.T C3L-02208 CCRCC miRNA-Seq tumor CPT0171890009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L004_R1_001.unaln.bam 180375201 BAM S21_L004_R1 unaligned CPTAC3 4b92de22-eb02-4a71-8828-2fbed8aa5deb fd7f0d169d890cb9f651c35ebc9bdcba {"aliquot_tag": "ALQ_3b91119b", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02208.miRNA-Seq.T.hg38 C3L-02208 CCRCC miRNA-Seq tumor CPT0171890009 06b7ce05-9228-4221-93cf-db3a8663f1a5_mirnaseq_gdc_realn.bam 199233805 BAM harmonized CPTAC3 6c88f57e-1470-46fb-97a7-42b28cdf6400 2c6652c6511d589395c81b0ca54958a9 {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor"} -C3L-02208.RNA-Seq.chimeric.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.chimeric.gdc_realn.bam 82060706 BAM chimeric harmonized CPTAC3 a84dbec5-9434-4932-8b4a-b08d91657fa1 a059d9f9c4eaedd9026a55af047ca998 {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02208.RNA-Seq.chimeric.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.chimeric.gdc_realn.bam 33735601 BAM chimeric harmonized CPTAC3 d1a9660f-1bae-4595-9fb9-0aef9148235c 1429a4b08e539c2ec5cfbd7664754bf0 {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor"} -C3L-02208.RNA-Seq.genomic.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.genomic.gdc_realn.bam 8456553027 BAM genomic harmonized CPTAC3 e009a4de-45d9-4c7d-82b3-41c10b50c92b b4991ccd030fc9a7d9e9eddc8158d51f {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02208.RNA-Seq.genomic.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.genomic.gdc_realn.bam 6769791965 BAM genomic harmonized CPTAC3 04e43b9a-45f3-4d01-b134-ef6293878a83 16640a16992efd628eda50d2e4876a6a {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor"} -C3L-02208.RNA-Seq.S13_L006_R1.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R1_001.fastq.gz 3782533384 FASTQ S13_L006_R1 unaligned CPTAC3 bcb43e2d-a2fb-4d53-8e68-1425c00672d5 c7dd1d946af2852a84ce0111be395e28 {"aliquot_tag": "ALQ_6d62bdde", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02208.RNA-Seq.S13_L006_R2.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R2_001.fastq.gz 4068249957 FASTQ S13_L006_R2 unaligned CPTAC3 fd5987b2-29a2-4bdd-b79c-2f23ea618e0b a5da1f5eec41b440c9d84f0065362ecf {"aliquot_tag": "ALQ_6d62bdde", "sample": "S13", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02208.RNA-Seq.S15_L004_R1.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R1_001.fastq.gz 3287953515 FASTQ S15_L004_R1 unaligned CPTAC3 1ef9c3e1-60c0-49d5-9b39-8081f0001d9c 89ea33185cf8af625dabb374590e5f5d {"aliquot_tag": "ALQ_3b91119b", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02208.RNA-Seq.S15_L004_R2.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R2_001.fastq.gz 3532810862 FASTQ S15_L004_R2 unaligned CPTAC3 877f5fd6-73d4-4659-821f-c854e2956b23 bdfeb7e4caaf753db33a37c2b72a2ca5 {"aliquot_tag": "ALQ_3b91119b", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02208.RNA-Seq.transcriptome.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.transcriptome.gdc_realn.bam 9939028411 BAM transcriptome harmonized CPTAC3 64ac38d1-3df2-4cf0-a146-373abc8dbf67 b481cc6230f548b5cc19dbbf6e27dba5 {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02208.RNA-Seq.transcriptome.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.transcriptome.gdc_realn.bam 9514349643 BAM transcriptome harmonized CPTAC3 23b5ff1d-cf8f-4153-9e76-585f91448358 83c2b571fe77978e8eea3505b971d59c {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor"} -C3L-02208.WGS.N C3L-02208 CCRCC WGS blood_normal CPT0167350002 CPT0167350002.WholeGenome.RP-1303.bam 55839634059 BAM aligned CPTAC3 ad73a462-2eea-48ad-81f8-b4a55a730077 970cb02efbc02f4f40e171fa90c0b6b0 {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal"} -C3L-02208.WGS.N.hg38 C3L-02208 CCRCC WGS blood_normal CPT0167350002 22c82d21-f2f4-460b-9769-87e602ad349e_wgs_gdc_realn.bam 80586728189 BAM harmonized CPTAC3 1a0dfa3e-7be7-4ba1-9610-7e710696d753 00ad2ccdefc3d03f55d05eaa3736c0ad {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal"} -C3L-02208.WGS.T C3L-02208 CCRCC WGS tumor CPT0171890011 CPT0171890011.WholeGenome.RP-1303.bam 56115625158 BAM aligned CPTAC3 6cbbb001-cf5c-4d36-b3f7-3d960e5bb14e 3cec41ef2f741a6232777b8c7934f99a {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor"} -C3L-02208.WGS.T.hg38 C3L-02208 CCRCC WGS tumor CPT0171890011 82962a1e-b1ac-4047-8bf9-e1f3b6396ef0_wgs_gdc_realn.bam 81061037434 BAM harmonized CPTAC3 c85b8bdc-96e4-4501-be74-ccf02c4a358b 09de4bd3db92edb9274b6c040e024d7a {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor"} -C3L-02208.WXS.N C3L-02208 CCRCC WXS blood_normal CPT0167350002 CPT0167350002.WholeExome.RP-1303.bam 31333107416 BAM aligned CPTAC3 10d41572-475e-4f61-ae5f-0e26f071ee1d b7ff59c7ee7abf40a1034770b9cf8a69 {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal"} -C3L-02208.WXS.N.hg38 C3L-02208 CCRCC WXS blood_normal CPT0167350002 22c82d21-f2f4-460b-9769-87e602ad349e_wxs_gdc_realn.bam 43611033439 BAM harmonized CPTAC3 4c756b28-f06c-41ef-92d7-673433ee4403 4f8988c6843c22951b762f9853b5dad1 {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal"} -C3L-02208.WXS.T C3L-02208 CCRCC WXS tumor CPT0171890011 CPT0171890011.WholeExome.RP-1303.bam 26609745186 BAM aligned CPTAC3 d4d34b94-4f0b-4ecf-97c7-3cb9e4555fd3 a81d307245977d7fabf48777986bcf2b {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor"} -C3L-02208.WXS.T.hg38 C3L-02208 CCRCC WXS tumor CPT0171890011 82962a1e-b1ac-4047-8bf9-e1f3b6396ef0_wxs_gdc_realn.bam 37112985835 BAM harmonized CPTAC3 3b8ba497-d4f7-4c9f-9be2-298b475a4164 56ba5bf927b737e1b4ab77d99745fe28 {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor"} -C3L-02210.MethArray.Green.T C3L-02210 CCRCC Methylation_Array tumor CPT0389570006 205589730156_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 12d0b20b-37e0-4dd6-a24e-2a1aa2ecafab 44b55cebcb826a746eec6619f4159a7b {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor"} -C3L-02210.MethArray.Red.T C3L-02210 CCRCC Methylation_Array tumor CPT0389570006 205589730156_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 d1ce67b9-5465-4c44-9db8-492e79987d5d e615d0486908d97082ca39ac3b5ca278 {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor"} -C3L-02210.miRNA-Seq.S6_L001_R1.T C3L-02210 CCRCC miRNA-Seq tumor CPT0389570009 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATTCCT_S6_L001_R1_001.unaln.bam 311277713 BAM S6_L001_R1 unaligned CPTAC3 e35d5160-3871-44c0-aaeb-7b77f52990a1 f74e7097ab1f206c173a9e5ddc25efb4 {"aliquot_tag": "ALQ_fc06c869", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02210.miRNA-Seq.T.hg38 C3L-02210 CCRCC miRNA-Seq tumor CPT0389570009 afa17d90-78b8-4359-a3a7-8e3f9d90f3a7_mirnaseq_gdc_realn.bam 338364995 BAM harmonized CPTAC3 1cbcdd4f-5c05-439b-a98a-1dbade6cd054 8f3151c875a391b497dcc38877b13c7f {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor"} -C3L-02210.RNA-Seq.chimeric.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.chimeric.gdc_realn.bam 423227566 BAM chimeric harmonized CPTAC3 cc6643e5-4a31-4fcb-993f-4bceee8d6df6 a98a352784af9c582c562e654436da28 {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor"} -C3L-02210.RNA-Seq.genomic.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.genomic.gdc_realn.bam 10086427400 BAM genomic harmonized CPTAC3 38aed37c-be55-446a-9f2c-59a249b50a95 be00c3d7f5e341bebcb8f8548da6a8a6 {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor"} -C3L-02210.RNA-Seq.S10_L003_R1.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 4757703509 FASTQ S10_L003_R1 unaligned CPTAC3 3f0311f3-2133-4706-8ae5-8503af6b41b7 9feab2c8573075730f54258a787e8b43 {"aliquot_tag": "ALQ_fc06c869", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02210.RNA-Seq.S10_L003_R2.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 5307998100 FASTQ S10_L003_R2 unaligned CPTAC3 be904ae4-da51-4c77-9fdf-72edf282f8b2 bac95b820aa950a679b077e82a8f3a99 {"aliquot_tag": "ALQ_fc06c869", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02210.RNA-Seq.transcriptome.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.transcriptome.gdc_realn.bam 11955512900 BAM transcriptome harmonized CPTAC3 6425f959-86e8-4fd1-a973-6b58198a1004 f9f1d9f1c11f39368647b01c8e5443b8 {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor"} -C3L-02210.WGS.N C3L-02210 CCRCC WGS blood_normal CPT0389630002 CPT0389630002.WholeGenome.RP-2158.bam 27219308781 BAM aligned CPTAC3 6e90d2bd-0871-41a2-a0b6-0d784299720a c51c7eabb7c9173adf7568919dfc883c {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02210.WGS.N.hg38 C3L-02210 CCRCC WGS blood_normal CPT0389630002 f32999ce-095a-4dfa-9451-d775f9ca0632_wgs_gdc_realn.bam 80843815084 BAM harmonized CPTAC3 0c683470-3bd2-4eb5-b1dc-625e95838809 4ac737fbd278bf9f0ec05498746764b4 {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02210.WGS.T C3L-02210 CCRCC WGS tumor CPT0389570006 CPT0389570006.WholeGenome.RP-2158.bam 29998002896 BAM aligned CPTAC3 2c98cbba-55a7-4aec-bc8c-645a71c79e4d 49187dfc7cb18a71ac4dfaa6aa7fa8ac {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor"} -C3L-02210.WGS.T.hg38 C3L-02210 CCRCC WGS tumor CPT0389570006 88e3c2a2-1d50-4943-871f-9c6729f602d3_wgs_gdc_realn.bam 93070812856 BAM harmonized CPTAC3 e87c6400-3016-4c07-a921-782f711a3656 24309beb7c041ee52479d3874ccfcd44 {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor"} -C3L-02210.WXS.N C3L-02210 CCRCC WXS blood_normal CPT0389630002 CPT0389630002.WholeExome.RP-1303.bam 24790001326 BAM aligned CPTAC3 b5a1bc5f-8acd-4144-941a-30aa03ca9493 e775a4b9f7f8950101c6bce347dc7e17 {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02210.WXS.N.hg38 C3L-02210 CCRCC WXS blood_normal CPT0389630002 f32999ce-095a-4dfa-9451-d775f9ca0632_wxs_gdc_realn.bam 33979563162 BAM harmonized CPTAC3 8691119f-73b6-4c05-bba5-65ac17a123c9 6b9490ea7d88ecbc9eff4a2129f2d8ab {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02210.WXS.T C3L-02210 CCRCC WXS tumor CPT0389570006 CPT0389570006.WholeExome.RP-1303.bam 23756908258 BAM aligned CPTAC3 0eda1904-a22d-406c-bd91-d104f4d02f1c e85dd73edd1e07f0dd22561cf1cdc9e2 {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor"} -C3L-02210.WXS.T.hg38 C3L-02210 CCRCC WXS tumor CPT0389570006 88e3c2a2-1d50-4943-871f-9c6729f602d3_wxs_gdc_realn.bam 32782034486 BAM harmonized CPTAC3 bde20e4b-b999-4fda-b7db-618b467f2e2c ab06bbd816b0e8bfb6368db407479e4a {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor"} -C3L-02211.MethArray.Green.T C3L-02211 CCRCC Methylation_Array tumor CPT0127860006 203219650217_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b2d7ef83-43e3-42b8-a3c6-ccdae9fd2562 c0791dcc296b1fbc10b54ddd1b0bf502 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor"} -C3L-02211.MethArray.Red.T C3L-02211 CCRCC Methylation_Array tumor CPT0127860006 203219650217_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 62a3abf1-6ab1-44d1-9720-64bcc37b22c6 f5c18ce5c3ed3dfcccc1c31b13f3d4f0 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor"} -C3L-02211.miRNA-Seq.A.hg38 C3L-02211 CCRCC miRNA-Seq tissue_normal CPT0127870006 e08ac1ca-ef98-406c-8485-b84029c08c92_mirnaseq_gdc_realn.bam 333568848 BAM harmonized CPTAC3 473c8474-476d-4aa7-99e0-db642808d21f c21554e39c3331ea84bbee6e39aa5da0 {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02211.miRNA-Seq.S13_L002_R1.A C3L-02211 CCRCC miRNA-Seq tissue_normal CPT0127870006 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L002_R1_001.unaln.bam 302707327 BAM S13_L002_R1 unaligned CPTAC3 2567d6e9-3b35-4849-aad9-2ebc11dff3db 46fd29970aebb1063460ca2bb0f69ab8 {"aliquot_tag": "ALQ_3f2e8935", "sample": "S13", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02211.miRNA-Seq.S4_L004_R1.T C3L-02211 CCRCC miRNA-Seq tumor CPT0127860008 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L004_R1_001.unaln.bam 250064796 BAM S4_L004_R1 unaligned CPTAC3 39a27af1-45dc-477d-aaf5-fb83b273c677 75240265910594566eb0062c020f22fd {"aliquot_tag": "ALQ_e5f68d82", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02211.miRNA-Seq.T.hg38 C3L-02211 CCRCC miRNA-Seq tumor CPT0127860008 dce7f65e-63a1-423f-bbc5-c872c1eddd4a_mirnaseq_gdc_realn.bam 274973094 BAM harmonized CPTAC3 c3d394e7-38c5-4202-86b8-781d5de97b5a 9111c7ad7d88b02ef3f4c457fa8ba649 {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor"} -C3L-02211.RNA-Seq.chimeric.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.chimeric.gdc_realn.bam 76674249 BAM chimeric harmonized CPTAC3 fd79ff1e-e0ec-47ae-8f7a-9fe4f46b0162 6201c2ae110384865ede669dcc5ef7b2 {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02211.RNA-Seq.chimeric.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.chimeric.gdc_realn.bam 87362412 BAM chimeric harmonized CPTAC3 fcda988c-7177-4d49-9a28-7d67db6f008c 3f2b4c2ffec886935f9432636dc69267 {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor"} -C3L-02211.RNA-Seq.genomic.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.genomic.gdc_realn.bam 9667198615 BAM genomic harmonized CPTAC3 92f684a5-3119-4680-bd3a-f192b8137af1 0603b3cf126777db792055fcdb393e1c {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02211.RNA-Seq.genomic.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.genomic.gdc_realn.bam 8308246470 BAM genomic harmonized CPTAC3 0b8a0e14-8492-4fa3-9908-4fe51f66fa67 8f5bf04768a790f8a1e4ec37bbc7029b {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor"} -C3L-02211.RNA-Seq.S4_L005_R1.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R1_001.fastq.gz 4261517679 FASTQ S4_L005_R1 unaligned CPTAC3 2a3d8d8a-a974-4899-b9b3-8e3827ea67c0 428918ce7b0c12eeb5b2fc565d900421 {"aliquot_tag": "ALQ_3f2e8935", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02211.RNA-Seq.S4_L005_R2.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R2_001.fastq.gz 4693856104 FASTQ S4_L005_R2 unaligned CPTAC3 94beab6e-ce2a-4376-95a3-6f319bff9e2d e2f734fbb19db047bd5ef75dc5f90832 {"aliquot_tag": "ALQ_3f2e8935", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02211.RNA-Seq.S8_L003_R1.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R1_001.fastq.gz 3837650510 FASTQ S8_L003_R1 unaligned CPTAC3 3734575e-f4f1-49e9-b8e9-659f90dd1a59 6388187f0dac37ba8c4abbff5e3be3a3 {"aliquot_tag": "ALQ_e5f68d82", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02211.RNA-Seq.S8_L003_R2.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R2_001.fastq.gz 4075759096 FASTQ S8_L003_R2 unaligned CPTAC3 3f7da9a4-afe7-4a98-a6f4-c42a40b3d1ba 8ff155c41ccc101446ed3e6a9f86be6c {"aliquot_tag": "ALQ_e5f68d82", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02211.RNA-Seq.transcriptome.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.transcriptome.gdc_realn.bam 10440770820 BAM transcriptome harmonized CPTAC3 2dd92c15-7be9-422c-b350-f089ead90e4f 0bdec35df72b393ed0111b6effe53527 {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02211.RNA-Seq.transcriptome.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.transcriptome.gdc_realn.bam 9551076540 BAM transcriptome harmonized CPTAC3 7b88ec03-fb2c-4e05-964f-5733f350d61d 9af5ba79ebde70daba584db47cb8b2e8 {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor"} -C3L-02211.WGS.N C3L-02211 CCRCC WGS blood_normal CPT0126630002 CPT0126630002.WholeGenome.RP-1303.bam 53322244529 BAM aligned CPTAC3 1f011ea2-ad6a-4d1a-9b9d-0d7f9279957b 0183396a9002e5290f5676ee370a51ba {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal"} -C3L-02211.WGS.N.hg38 C3L-02211 CCRCC WGS blood_normal CPT0126630002 d435d723-817c-4059-989a-a888406d22ed_wgs_gdc_realn.bam 77839644327 BAM harmonized CPTAC3 54cdcfad-7d64-49d1-a975-dec8b6315631 532a459e8c1e5e7082e635f39dbb8422 {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal"} -C3L-02211.WGS.T C3L-02211 CCRCC WGS tumor CPT0127860006 CPT0127860006.WholeGenome.RP-1303.bam 60583694480 BAM aligned CPTAC3 a60f9555-0225-4e0d-b783-7235ea259a26 e88db8b8a44f479287405e422a95ab94 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor"} -C3L-02211.WGS.T.hg38 C3L-02211 CCRCC WGS tumor CPT0127860006 efa35bcb-d88d-4858-a71a-4f2b3c0f58d8_wgs_gdc_realn.bam 88667444814 BAM harmonized CPTAC3 44c59a04-00f3-458a-bff3-0595467c0ff4 edd5a04f160064cad9fcd6496f8d533d {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor"} -C3L-02211.WXS.N C3L-02211 CCRCC WXS blood_normal CPT0126630002 CPT0126630002.WholeExome.RP-1303.bam 20089125974 BAM aligned CPTAC3 46ed2eb1-f5ad-40d6-bd0a-5993212002c8 11931155c5c65edd119e2339d8775332 {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal"} -C3L-02211.WXS.N.hg38 C3L-02211 CCRCC WXS blood_normal CPT0126630002 d435d723-817c-4059-989a-a888406d22ed_wxs_gdc_realn.bam 27722863681 BAM harmonized CPTAC3 8f8e9b44-7943-485d-87c7-64071c0716cb 04dde0690c2c262d65ad784f1e46190a {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal"} -C3L-02211.WXS.T C3L-02211 CCRCC WXS tumor CPT0127860006 CPT0127860006.WholeExome.RP-1303.bam 27355923333 BAM aligned CPTAC3 5b658275-c459-4be1-b9ae-5f6ff0836a66 95e19270ab4ed8e1e79efcbd9c49a2a4 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor"} -C3L-02211.WXS.T.hg38 C3L-02211 CCRCC WXS tumor CPT0127860006 efa35bcb-d88d-4858-a71a-4f2b3c0f58d8_wxs_gdc_realn.bam 37560817145 BAM harmonized CPTAC3 6319ea19-df18-4ad2-89f7-79d79bfcd0d2 b5c5064c9d9958364df827a176fa17f9 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor"} -C3L-02212.MethArray.Green.T C3L-02212 CCRCC Methylation_Array tumor CPT0389450006 205589730156_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 142be6e1-c0c8-4f87-945a-4d1d2cb800da 757b5aa4d2fec0bd7b3980d0601357b8 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor"} -C3L-02212.MethArray.Red.T C3L-02212 CCRCC Methylation_Array tumor CPT0389450006 205589730156_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 ba0a1641-c82c-459b-ba85-63675d381445 b8393e6f10b4879e092a17795bd31228 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor"} -C3L-02212.miRNA-Seq.A.hg38 C3L-02212 CCRCC miRNA-Seq tissue_normal CPT0389460006 15d01bbe-834f-44f8-b796-d0569a77762a_mirnaseq_gdc_realn.bam 359534376 BAM harmonized CPTAC3 3be36556-d608-4c7f-a751-c4326319a0a2 4bb4548e438aae56d06cff3ebfa9cdbe {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02212.miRNA-Seq.S1_L001_R1.T C3L-02212 CCRCC miRNA-Seq tumor CPT0389450009 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 345248675 BAM S1_L001_R1 unaligned CPTAC3 0bbc4ad8-b663-4a46-a139-1789329d42da a9a5dfdd0bee4bfefec2d67e70c74c8b {"aliquot_tag": "ALQ_4d9a48ac", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02212.miRNA-Seq.S4_L001_R1.A C3L-02212 CCRCC miRNA-Seq tissue_normal CPT0389460006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATGAGC_S4_L001_R1_001.unaln.bam 330705484 BAM S4_L001_R1 unaligned CPTAC3 5ac0ef5a-eb41-4b8f-97bd-bcd4e0a8e9b8 f4819349ab066d92ffa8b848bf02092e {"aliquot_tag": "ALQ_9a852fed", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02212.miRNA-Seq.T.hg38 C3L-02212 CCRCC miRNA-Seq tumor CPT0389450009 8c8b6c5a-b43e-4650-9b3a-bd5486196b58_mirnaseq_gdc_realn.bam 371910243 BAM harmonized CPTAC3 3d13c724-b168-4966-9a8e-b25e7a23bd57 df878d416e0a31d744893633ff25ba1c {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor"} -C3L-02212.RNA-Seq.chimeric.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.chimeric.gdc_realn.bam 433928123 BAM chimeric harmonized CPTAC3 6cf1758a-4b51-4aec-aab6-20c7783cb916 6cbee8459e10b094ef7e22e431196a79 {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02212.RNA-Seq.chimeric.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.chimeric.gdc_realn.bam 250265936 BAM chimeric harmonized CPTAC3 4a739bf0-3c65-471b-8885-d74976ddf298 af1bceb40dc6be2e0adec6c00cc833d4 {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor"} -C3L-02212.RNA-Seq.genomic.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.genomic.gdc_realn.bam 7809179218 BAM genomic harmonized CPTAC3 b30fc29e-5976-4550-8aa7-caf4bd7646f4 dd918b94b0c3bc8b997ccfeba5f25839 {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02212.RNA-Seq.genomic.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.genomic.gdc_realn.bam 6755871833 BAM genomic harmonized CPTAC3 3e47096f-3602-41ad-badf-4546d2b7c5fc e9dd7ab4f06701a6723306d8962c6604 {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor"} -C3L-02212.RNA-Seq.S11_L003_R1.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3497719425 FASTQ S11_L003_R1 unaligned CPTAC3 18900f0a-a26d-498f-bfb0-30e04613d013 c8de071ef3d65f850730192457074983 {"aliquot_tag": "ALQ_9a852fed", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02212.RNA-Seq.S11_L003_R2.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4013916891 FASTQ S11_L003_R2 unaligned CPTAC3 08361579-ffdf-4756-bdba-c701cc5f107e c2793fc02dfc08b121fb07fcdec1a630 {"aliquot_tag": "ALQ_9a852fed", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02212.RNA-Seq.S9_L003_R1.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 3220450476 FASTQ S9_L003_R1 unaligned CPTAC3 b6dfd7fd-e0a6-4c74-ac40-98222b29a5b9 e32ccac13ebc10d113dd81155c4f5d85 {"aliquot_tag": "ALQ_4d9a48ac", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02212.RNA-Seq.S9_L003_R2.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 3546736918 FASTQ S9_L003_R2 unaligned CPTAC3 a1f6224c-a3dc-4f45-9929-6411132764a3 32455b5a034973e195aa6b6aeb45e105 {"aliquot_tag": "ALQ_4d9a48ac", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02212.RNA-Seq.transcriptome.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.transcriptome.gdc_realn.bam 8107275388 BAM transcriptome harmonized CPTAC3 55c428a7-0b23-4e89-af6c-6425c2d1427a 68f4de4dd63e0a9eba6669f59c43054c {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02212.RNA-Seq.transcriptome.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.transcriptome.gdc_realn.bam 7540878003 BAM transcriptome harmonized CPTAC3 64b4929c-96b4-4b7b-b316-752c71616f63 7c3d3c3ae5c6fae71cd3308c709394ca {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor"} -C3L-02212.WGS.N C3L-02212 CCRCC WGS blood_normal CPT0389550002 CPT0389550002.WholeGenome.RP-2158.bam 27965064197 BAM aligned CPTAC3 aba5203b-9c1a-4911-b05b-6af1110cfa36 95b28ff8c4f6eca568a341b732882852 {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal"} -C3L-02212.WGS.N.hg38 C3L-02212 CCRCC WGS blood_normal CPT0389550002 88ba4cad-fb6d-4b71-8659-89062560a40d_wgs_gdc_realn.bam 83941558361 BAM harmonized CPTAC3 387ba7c9-e96b-4e06-bfe8-608f41402e3f 06185458f6db54c6da81994127cec46c {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal"} -C3L-02212.WGS.T C3L-02212 CCRCC WGS tumor CPT0389450006 CPT0389450006.WholeGenome.RP-2158.bam 25650571429 BAM aligned CPTAC3 1c129e7b-697e-4e1a-a1a4-f4a536c14790 706bd5ce76a20a89ad9a738bd447db12 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor"} -C3L-02212.WGS.T.hg38 C3L-02212 CCRCC WGS tumor CPT0389450006 0e7e1435-3b74-4313-8fbf-91c262e887ce_wgs_gdc_realn.bam 77092159353 BAM harmonized CPTAC3 419b567c-e64c-4c63-9a90-e281f738a5c3 b6eff8acf7bb8977f02ee11f4d99b9fd {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor"} -C3L-02212.WXS.N C3L-02212 CCRCC WXS blood_normal CPT0389550002 CPT0389550002.WholeExome.RP-1303.bam 23231524501 BAM aligned CPTAC3 40be3097-2231-4e2e-8458-24081ef7d314 a1efa42a2ece30d015a0a903b8ee6e8d {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal"} -C3L-02212.WXS.N.hg38 C3L-02212 CCRCC WXS blood_normal CPT0389550002 88ba4cad-fb6d-4b71-8659-89062560a40d_wxs_gdc_realn.bam 31758239895 BAM harmonized CPTAC3 dff997c5-c0c5-42d0-aa80-d0ba691f429c acf89babaaad228f635266bd8a45dbeb {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal"} -C3L-02212.WXS.T C3L-02212 CCRCC WXS tumor CPT0389450006 CPT0389450006.WholeExome.RP-1303.bam 20746730518 BAM aligned CPTAC3 65e728a2-0549-42fe-aaa1-8a7434c3f5c1 ba36cdb09b5efa0667219d849c825baa {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor"} -C3L-02212.WXS.T.hg38 C3L-02212 CCRCC WXS tumor CPT0389450006 0e7e1435-3b74-4313-8fbf-91c262e887ce_wxs_gdc_realn.bam 28804069539 BAM harmonized CPTAC3 164f6265-440f-44d5-bc29-dde395c9926e 22c3e798bca3af888a257d821aa477c4 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor"} -C3L-02214.MethArray.Green.T C3L-02214 CCRCC Methylation_Array tumor CPT0127920006 203219640047_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7a35709d-17c6-4a27-9d3b-a8816b088446 9b06d609a0f5de58d5171f26cd59c643 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor"} -C3L-02214.MethArray.Red.T C3L-02214 CCRCC Methylation_Array tumor CPT0127920006 203219640047_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 03439867-2ce6-4072-ba56-dd4c4a19a57d 06450b58c397a9b325b708e6e13061a3 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor"} -C3L-02214.miRNA-Seq.S3_L004_R1.T C3L-02214 CCRCC miRNA-Seq tumor CPT0127920008 190108_UNC31-K00269_0176_AHYGLVBBXX_TTAGGC_S3_L004_R1_001.unaln.bam 205652870 BAM S3_L004_R1 unaligned CPTAC3 5d04b939-cddd-4a57-9a01-f08560880a35 182ddb70607c74b0cfdb279ae8f67763 {"aliquot_tag": "ALQ_db2af8e7", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02214.miRNA-Seq.T.hg38 C3L-02214 CCRCC miRNA-Seq tumor CPT0127920008 ef2abf2a-a4cd-4816-81a6-91878425d5d9_mirnaseq_gdc_realn.bam 235963168 BAM harmonized CPTAC3 204a3f95-87ea-47c2-a2e9-dc0877de83dc 36a521bcc2dbccb206451c500adc70a6 {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor"} -C3L-02214.RNA-Seq.chimeric.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.chimeric.gdc_realn.bam 63506775 BAM chimeric harmonized CPTAC3 555e37b8-c7db-451c-a9ac-6fa4b751de61 c552c74e6781e5b66b429f5777e40dec {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor"} -C3L-02214.RNA-Seq.genomic.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.genomic.gdc_realn.bam 8204528860 BAM genomic harmonized CPTAC3 8789598f-a95a-4a4e-b41b-9e07db19b507 4103a3494b7e5f67ddc9189ef5f21b11 {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor"} -C3L-02214.RNA-Seq.S5_L003_R1.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R1_001.fastq.gz 3722281711 FASTQ S5_L003_R1 unaligned CPTAC3 3ac2c4d5-1263-40d2-a4c8-463402e34374 890692f625e57c3d58b5ce97715f6875 {"aliquot_tag": "ALQ_db2af8e7", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02214.RNA-Seq.S5_L003_R2.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R2_001.fastq.gz 4021584290 FASTQ S5_L003_R2 unaligned CPTAC3 67079328-05bc-49bd-b6a2-a24ee5b75d40 dc7ff3b399df9ffe516b2087d4a52732 {"aliquot_tag": "ALQ_db2af8e7", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02214.RNA-Seq.transcriptome.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.transcriptome.gdc_realn.bam 9230135938 BAM transcriptome harmonized CPTAC3 0ae249ee-3c3b-45c9-86d9-06861a20d2be 5dd714e16a84b40e9861ca0da460d61f {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor"} -C3L-02214.WGS.N C3L-02214 CCRCC WGS blood_normal CPT0126590002 CPT0126590002.WholeGenome.RP-1303.bam 52017495298 BAM aligned CPTAC3 3204a451-9657-4d6f-b864-53a999c01c29 9fc1f5ce0f1f61b623f34c772d28b854 {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal"} -C3L-02214.WGS.N.hg38 C3L-02214 CCRCC WGS blood_normal CPT0126590002 a85adbcf-2937-4743-b96c-fc696acc8ebf_wgs_gdc_realn.bam 76052930745 BAM harmonized CPTAC3 fbc38c8d-ab6b-4991-9508-c938afdac03e fbb907ad71d4efca9f5682cba067965a {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal"} -C3L-02214.WGS.T C3L-02214 CCRCC WGS tumor CPT0127920006 CPT0127920006.WholeGenome.RP-1303.bam 59554586201 BAM aligned CPTAC3 0e022492-2a9a-4c8a-b3f6-dc57d75bbe91 537ba15148011f28f05476fdd7d179a4 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor"} -C3L-02214.WGS.T.hg38 C3L-02214 CCRCC WGS tumor CPT0127920006 df9996d0-814d-4c19-b91c-846deae126b5_wgs_gdc_realn.bam 86164660182 BAM harmonized CPTAC3 968ffad8-2773-464e-a8dd-4a5a29acaee4 617d84547f4630369a3398e816929c25 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor"} -C3L-02214.WXS.N C3L-02214 CCRCC WXS blood_normal CPT0126590002 CPT0126590002.WholeExome.RP-1303.bam 17590894260 BAM aligned CPTAC3 9f939d63-6b1a-4e0c-88b8-7319cc7078a1 b4b546a3aac8732cd741b905f0883d2e {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal"} -C3L-02214.WXS.N.hg38 C3L-02214 CCRCC WXS blood_normal CPT0126590002 a85adbcf-2937-4743-b96c-fc696acc8ebf_wxs_gdc_realn.bam 24474931843 BAM harmonized CPTAC3 d62303b7-e1db-4955-83f4-22d927039cdf 91690fe80f393d5623d0b2eaa2d8e850 {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal"} -C3L-02214.WXS.T C3L-02214 CCRCC WXS tumor CPT0127920006 CPT0127920006.WholeExome.RP-1303.bam 34506831591 BAM aligned CPTAC3 4b13cd62-8b80-4607-8852-d13095e2634e dd9791daf4b293eea47463111453200f {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor"} -C3L-02214.WXS.T.hg38 C3L-02214 CCRCC WXS tumor CPT0127920006 df9996d0-814d-4c19-b91c-846deae126b5_wxs_gdc_realn.bam 46462401526 BAM harmonized CPTAC3 2804f328-10a1-4e44-8e63-aa74e59de2bc be6462c89025c6e22ce4b2cb64752afb {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor"} -C3L-02216.MethArray.Green.T C3L-02216 UCEC Methylation_Array tumor CPT0104690009 202234380017_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4cb6da06-913f-49b5-96ef-e7ecb090c01c 16bac713d253e1d40476d01799670b1e {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor"} -C3L-02216.MethArray.Red.T C3L-02216 UCEC Methylation_Array tumor CPT0104690009 202234380017_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 386a0b84-e09c-4937-9f84-dde7d1f77fff b4b6d0b50e1d2d00faaa1733ae551a26 {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor"} -C3L-02216.miRNA-Seq.A.hg38 C3L-02216 UCEC miRNA-Seq tissue_normal CPT0104710009 5c12af7e-e45b-42c2-8ffa-d6dfb6709d23_mirnaseq_gdc_realn.bam 296938274 BAM harmonized CPTAC3 6b2357c7-284c-4691-a833-617228a5ae68 1f35c8b96ad0963e85855af93668bc94 {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.miRNA-Seq.S23_L005_R1.A C3L-02216 UCEC miRNA-Seq tissue_normal CPT0104710009 181113_UNC31-K00269_0164_AH23NNBBXY_TCGAAG_S23_L005_R1_001.unaln.bam 260386893 BAM S23_L005_R1 unaligned CPTAC3 2cf1fc27-61e6-42b4-809c-6ce9fba1f400 48397a4aa0d8b36b2b420a760debb097 {"aliquot_tag": "ALQ_a24ace31", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.miRNA-Seq.S40_L007_R1.T C3L-02216 UCEC miRNA-Seq tumor CPT0104690006 181108_UNC31-K00269_0163_BH23TVBBXY_CTCAGA_S40_L007_R1_001.unaln.bam 185906214 BAM S40_L007_R1 unaligned CPTAC3 e1f69030-7b09-45cc-a6a5-106a8bc2fce7 78f70cd059bb55cb02df69e46a7ee93a {"aliquot_tag": "ALQ_c9d94bc4", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02216.miRNA-Seq.T.hg38 C3L-02216 UCEC miRNA-Seq tumor CPT0104690006 1081ae81-bb4b-419a-bd10-a587c0bc4e99_mirnaseq_gdc_realn.bam 204233064 BAM harmonized CPTAC3 1003c656-d8b3-42da-9270-67c05593bf01 1d87d21f82ad5df8af21d598dd56365a {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor"} -C3L-02216.RNA-Seq.chimeric.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.chimeric.gdc_realn.bam 42350640 BAM chimeric harmonized CPTAC3 a68f339b-6cde-4b1b-b096-9eb977980cca 6063d493c5f268dc0c1aa05b75eafb53 {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.RNA-Seq.chimeric.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.chimeric.gdc_realn.bam 30419770 BAM chimeric harmonized CPTAC3 06a878af-4a7c-4ff5-a39d-ef66a89f2f4c d6f866de53619d119ad1626427ec1b4f {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor"} -C3L-02216.RNA-Seq.genomic.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.genomic.gdc_realn.bam 9777421099 BAM genomic harmonized CPTAC3 0a062262-e8c6-4b32-b73a-a231898730e5 ecd653fe6543196d74907c0cf2e3a34f {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.RNA-Seq.genomic.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.genomic.gdc_realn.bam 8799924259 BAM genomic harmonized CPTAC3 46fc3060-f6aa-4436-8294-af2b35edcd43 3b412fe7ac8d1bae91a36b5458d4b909 {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor"} -C3L-02216.RNA-Seq.S12_L004_R1.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4205289055 FASTQ S12_L004_R1 unaligned CPTAC3 a3b7d606-ff64-418d-b95f-74010da8202e b557f610cdd95c9619d1b8f7930c4ac8 {"aliquot_tag": "ALQ_a24ace31", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.RNA-Seq.S12_L004_R2.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4579121509 FASTQ S12_L004_R2 unaligned CPTAC3 33a70dd5-22ca-4d04-a209-1bfd724a113c c2c7d2b4c6e007e853fbeeaa7ba351e0 {"aliquot_tag": "ALQ_a24ace31", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.RNA-Seq.S22_L006_R1.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4204635447 FASTQ S22_L006_R1 unaligned CPTAC3 05dbfd5a-a757-41dd-841e-7e47058cd397 2f6a37ab942f03b12e9c13a7e35d5915 {"aliquot_tag": "ALQ_c9d94bc4", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02216.RNA-Seq.S22_L006_R2.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4693675998 FASTQ S22_L006_R2 unaligned CPTAC3 7b873d63-5837-4ecc-9b74-ba55e5591189 d736a4d139710cd38e2bffda346a0c16 {"aliquot_tag": "ALQ_c9d94bc4", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02216.RNA-Seq.transcriptome.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.transcriptome.gdc_realn.bam 11598916487 BAM transcriptome harmonized CPTAC3 68166715-22bc-4a6b-ac82-eb43536f22d8 30117977bd3f7ad1a786ca008a2921c3 {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.RNA-Seq.transcriptome.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.transcriptome.gdc_realn.bam 11570462527 BAM transcriptome harmonized CPTAC3 de65d58a-6d85-4a59-ba06-d1fb48c2ff59 64368ee39212ddc0f71bc516050a7b99 {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor"} -C3L-02216.WGS.A C3L-02216 UCEC WGS tissue_normal CPT0104710006 CPT0104710006.WholeGenome.RP-1303.bam 61403252971 BAM aligned CPTAC3 1cc2a9b7-954b-42e6-ad60-0c8facc97bce 9d13319562108fda821f8ec8346b22c9 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.WGS.A.hg38 C3L-02216 UCEC WGS tissue_normal CPT0104710006 9219b702-e723-4d6a-b2a3-a09dbd583c05_wgs_gdc_realn.bam 90050451261 BAM harmonized CPTAC3 a1b49a9a-fa41-4f34-adc9-943ec4d86a98 0e6c9b8aed869e747c49700503e703d5 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.WGS.N C3L-02216 UCEC WGS blood_normal CPT0105150002 CPT0105150002.WholeGenome.RP-1303.bam 71976253545 BAM aligned CPTAC3 315ac510-9294-4a95-9e8a-4054f577eafe 821709fc31648f6217898243007cd045 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02216.WGS.N.hg38 C3L-02216 UCEC WGS blood_normal CPT0105150002 c80497f4-88bd-4256-a557-cae11b6ed74d_wgs_gdc_realn.bam 106355350643 BAM harmonized CPTAC3 79cd477f-43f4-4a0d-b6a1-6699af5a97b0 f23fb52ec2a650d58cbc15445c869400 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02216.WGS.T C3L-02216 UCEC WGS tumor CPT0104690009 CPT0104690009.WholeGenome.RP-1303.bam 65079705300 BAM aligned CPTAC3 4c0a5602-cee2-4e1e-9332-2f7acec93710 ce27987979f66f149775b26e0dec31ec {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor"} -C3L-02216.WGS.T.hg38 C3L-02216 UCEC WGS tumor CPT0104690009 79ceb6e6-77e8-4ca0-bd3f-53f466ebec94_wgs_gdc_realn.bam 97420934186 BAM harmonized CPTAC3 085259e0-a8e3-4120-97c6-e8da430ebc49 9e4c69200dca954c740cfcdb175c0084 {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor"} -C3L-02216.WXS.A C3L-02216 UCEC WXS tissue_normal CPT0104710006 CPT0104710006.WholeExome.RP-1303.bam 38988191398 BAM aligned CPTAC3 f78d1447-a641-4dbe-8562-8201944e8430 2ee40d9356c2cf559e07e68a4a2521a5 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.WXS.A.hg38 C3L-02216 UCEC WXS tissue_normal CPT0104710006 9219b702-e723-4d6a-b2a3-a09dbd583c05_wxs_gdc_realn.bam 51695909384 BAM harmonized CPTAC3 4572539a-54d2-4a98-947e-cb0a86a22cf8 910db3e4acac4d490fcedf8bbb96c721 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02216.WXS.N C3L-02216 UCEC WXS blood_normal CPT0105150002 CPT0105150002.WholeExome.RP-1303.bam 27420052446 BAM aligned CPTAC3 b35a14a3-460c-487e-bf52-9b4eb47cb1d3 f7b091caf57b7713a4bb3b92066579a9 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02216.WXS.N.hg38 C3L-02216 UCEC WXS blood_normal CPT0105150002 c80497f4-88bd-4256-a557-cae11b6ed74d_wxs_gdc_realn.bam 37787251761 BAM harmonized CPTAC3 7a28f467-24d1-4eb4-ba72-e06010cbe706 edb70cd0d6056eca482fe072bc25bc26 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02216.WXS.T C3L-02216 UCEC WXS tumor CPT0104690009 CPT0104690009.WholeExome.RP-1303.bam 25148395604 BAM aligned CPTAC3 be638e78-7fc5-481d-ba3c-229a8245354b 339a197b362eea5604c3d5add54dce8d {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor"} -C3L-02216.WXS.T.hg38 C3L-02216 UCEC WXS tumor CPT0104690009 79ceb6e6-77e8-4ca0-bd3f-53f466ebec94_wxs_gdc_realn.bam 34795744446 BAM harmonized CPTAC3 72d192c6-0504-4022-9e1e-fc2f08b42d50 91411d14cf288210d27dd4bf88ff8f5e {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor"} -C3L-02219.MethArray.Green.A C3L-02219 LUAD Methylation_Array tissue_normal CPT0104650009 203027390081_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fd9a28af-c262-4215-ab7c-147bdcfdab24 ebe788969e7054afbe44e30144ebb7e4 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.MethArray.Green.T C3L-02219 LUAD Methylation_Array tumor CPT0104630009 202234380017_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b9a45765-98b5-497f-8c36-7d015319f6a6 03472148c57edebdec00bff3a31ff0f5 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor"} -C3L-02219.MethArray.Red.A C3L-02219 LUAD Methylation_Array tissue_normal CPT0104650009 203027390081_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 12674588-9281-41e4-8f08-3939415708bf d21ab9f1502edad314dfe57468efecbb {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.MethArray.Red.T C3L-02219 LUAD Methylation_Array tumor CPT0104630009 202234380017_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 627077ce-6238-4dbe-a598-ae4c5c14bcbc 2b17e72192f03414165e05254464d5e7 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor"} -C3L-02219.miRNA-Seq.A.hg38 C3L-02219 LUAD miRNA-Seq tissue_normal CPT0104650006 42cf9f05-cbcc-4d88-ab26-f2cbe8de7dd1_mirnaseq_gdc_realn.bam 276379458 BAM harmonized CPTAC3 8256191d-595f-47d0-b6e3-5c0180bcb6ca 6e9ae191f052b7b417838a4f6ea2d789 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.miRNA-Seq.S12_L007_R1.A C3L-02219 LUAD miRNA-Seq tissue_normal CPT0104650006 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L007_R1_001.unaln.bam 251162438 BAM S12_L007_R1 unaligned CPTAC3 efae2be6-0b82-4f54-a540-0d0c680ddeac 84ed7851bd9b9cd0921168235bd7bf3b {"aliquot_tag": "ALQ_c29a6c5", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.miRNA-Seq.S39_L007_R1.T C3L-02219 LUAD miRNA-Seq tumor CPT0104630006 181108_UNC31-K00269_0163_BH23TVBBXY_CTATAC_S39_L007_R1_001.unaln.bam 234737796 BAM S39_L007_R1 unaligned CPTAC3 75aa3203-309e-4532-ba33-88a3c13df721 f0ac4734e099739571ab11570674a7de {"aliquot_tag": "ALQ_83695365", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02219.miRNA-Seq.T.hg38 C3L-02219 LUAD miRNA-Seq tumor CPT0104630006 9629c530-8c91-48de-8852-c06a2fc12eb0_mirnaseq_gdc_realn.bam 256916755 BAM harmonized CPTAC3 1cf39c8e-381b-4945-bf56-4e3f16d7c0da e8e81a845c3eb858262e1a092f875fae {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor"} -C3L-02219.RNA-Seq.chimeric.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.chimeric.gdc_realn.bam 83388847 BAM chimeric harmonized CPTAC3 1352afa7-a6a9-4365-812a-c0624c843527 4977e956cb172761b5f47436e9df2712 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.RNA-Seq.chimeric.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.chimeric.gdc_realn.bam 34519023 BAM chimeric harmonized CPTAC3 38ed323a-5c0a-40df-96a5-56e6f6cfe110 941f5a5f9ef4fa9fc342dbcc27168e63 {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor"} -C3L-02219.RNA-Seq.genomic.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.genomic.gdc_realn.bam 8460656998 BAM genomic harmonized CPTAC3 bd0bdd4c-20c4-420b-aa7f-79fd33abba3a e60e793c7f2e256de08665e369733bc9 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.RNA-Seq.genomic.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.genomic.gdc_realn.bam 8665283399 BAM genomic harmonized CPTAC3 c2b1bb9d-65fd-4568-b6de-cc01a74a0c50 3a60a3a89d7f52c853f68f3c941928c6 {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor"} -C3L-02219.RNA-Seq.S11_L003_R1.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R1_001.fastq.gz 4090146805 FASTQ S11_L003_R1 unaligned CPTAC3 ade14353-6a49-415f-adee-3ee3ace2433a b443017477dc3c0849e2f0c3103b8776 {"aliquot_tag": "ALQ_c29a6c5", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.RNA-Seq.S11_L003_R2.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R2_001.fastq.gz 4521366772 FASTQ S11_L003_R2 unaligned CPTAC3 bf847923-a173-4bd4-a150-7fdd5b7436da 4689e23407b86d281ff0f4c24d633ba1 {"aliquot_tag": "ALQ_c29a6c5", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.RNA-Seq.S19_L006_R1.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R1_001.fastq.gz 3890348910 FASTQ S19_L006_R1 unaligned CPTAC3 5f11ff6e-478d-4f11-9736-0db21ae7280b 698fc92260ac4fca4e84665fde1c1017 {"aliquot_tag": "ALQ_83695365", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02219.RNA-Seq.S19_L006_R2.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R2_001.fastq.gz 4346562848 FASTQ S19_L006_R2 unaligned CPTAC3 ff174056-89d3-47c0-a676-33b2d1ffd271 dbbc089cc51084b460fcd397d3d46d9c {"aliquot_tag": "ALQ_83695365", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02219.RNA-Seq.transcriptome.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.transcriptome.gdc_realn.bam 10678865204 BAM transcriptome harmonized CPTAC3 11883439-c187-48c9-baf3-2f67d1183b5a 0a8f540283dc1bcdd8bf6454d8260490 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.RNA-Seq.transcriptome.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.transcriptome.gdc_realn.bam 11436062083 BAM transcriptome harmonized CPTAC3 37747f50-d6ee-4d80-a759-c6e38c1c024f 6261d71b0958c65f0a6177c28ee9931f {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor"} -C3L-02219.WGS.A C3L-02219 LUAD WGS tissue_normal CPT0104650009 CPT0104650009.WholeGenome.RP-1303.bam 52067264142 BAM aligned CPTAC3 52073d5c-cb9a-4373-9aa6-b3a7fbfc0462 35c5a740e9d799e6dd3a90672fcedf26 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.WGS.A.hg38 C3L-02219 LUAD WGS tissue_normal CPT0104650009 2fe74fe3-b44f-4d4d-82a6-4ac00f46f343_wgs_gdc_realn.bam 76774603020 BAM harmonized CPTAC3 82cc2a5c-81a3-4e1f-93cc-f61d7d5c9b51 48fb04a239161cff4f5d98876f2d5c32 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.WGS.N C3L-02219 LUAD WGS blood_normal CPT0105160002 CPT0105160002.WholeGenome.RP-1303.bam 57842864379 BAM aligned CPTAC3 d2602466-8cf1-4865-8fe1-724efd5ff9c7 1b6e30fb1752cd4f9f83d684da79b8f7 {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal"} -C3L-02219.WGS.N.hg38 C3L-02219 LUAD WGS blood_normal CPT0105160002 fa479329-731f-43cb-aaa8-35851c12da27_wgs_gdc_realn.bam 83611601754 BAM harmonized CPTAC3 ee4383ce-637e-4d79-9f75-34de05a2e0ec 6fa9e2cdf35a07424c5dcf2ebcfad11b {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal"} -C3L-02219.WGS.T C3L-02219 LUAD WGS tumor CPT0104630009 CPT0104630009.WholeGenome.RP-1303.bam 58538313724 BAM aligned CPTAC3 0057c98f-a45b-4fb0-bbcc-752ac2661866 ad0b9cf0abca85f5a8424f836db41473 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor"} -C3L-02219.WGS.T.hg38 C3L-02219 LUAD WGS tumor CPT0104630009 8c0016cb-0881-4ed7-b781-e1ec7987cd27_wgs_gdc_realn.bam 86521817753 BAM harmonized CPTAC3 9e38d9d5-190e-4ba9-a4f1-e2d66f600b46 0f2919d08345fa329fcd517260d1a540 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor"} -C3L-02219.WXS.A C3L-02219 LUAD WXS tissue_normal CPT0104650009 CPT0104650009.WholeExome.RP-1303.bam 37594449150 BAM aligned CPTAC3 8d21acfb-b7bc-42ee-85ca-240ff1381cf1 70407173c75ed7e1cea0248c94647c20 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.WXS.A.hg38 C3L-02219 LUAD WXS tissue_normal CPT0104650009 2fe74fe3-b44f-4d4d-82a6-4ac00f46f343_wxs_gdc_realn.bam 50835644500 BAM harmonized CPTAC3 5ec63922-4ede-4a8b-804c-20d76141152c d25a399310a88cd8644bb9b48ea78898 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02219.WXS.N C3L-02219 LUAD WXS blood_normal CPT0105160002 CPT0105160002.WholeExome.RP-1303.bam 37938843499 BAM aligned CPTAC3 77999388-54b2-4ce0-ba21-70bbab90caa0 c810f8beecdd780c84700c492f9c17db {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal"} -C3L-02219.WXS.N.hg38 C3L-02219 LUAD WXS blood_normal CPT0105160002 fa479329-731f-43cb-aaa8-35851c12da27_wxs_gdc_realn.bam 51052207833 BAM harmonized CPTAC3 957524de-e064-45b2-b7e4-21afff187be1 24ca38621a6745190f8f1ae2d15bd596 {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal"} -C3L-02219.WXS.T C3L-02219 LUAD WXS tumor CPT0104630009 CPT0104630009.WholeExome.RP-1303.bam 29623651893 BAM aligned CPTAC3 f7c46413-e306-431e-8ff1-67951c20905a 8fdbe4c0bc86d4f40aec27d09258711a {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor"} -C3L-02219.WXS.T.hg38 C3L-02219 LUAD WXS tumor CPT0104630009 8c0016cb-0881-4ed7-b781-e1ec7987cd27_wxs_gdc_realn.bam 41436630663 BAM harmonized CPTAC3 e6421728-d85a-488a-ac5a-66b304de7588 2358153c19ca95f51c7dec749e1d7e45 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor"} -C3L-02220.MethArray.Green.A C3L-02220 CCRCC Methylation_Array tissue_normal CPT0104580006 204373100047_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 04a68068-32d8-40a9-8b9d-9403ef102474 a604fc3670b4f84fd23d4ec9f563eced {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.MethArray.Green.T C3L-02220 CCRCC Methylation_Array tumor CPT0104550009 202234380064_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b3d128f-eceb-445a-a21a-96c699dee35b 35d7a06fe808aee7844dffb759446e4d {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor"} -C3L-02220.MethArray.Red.A C3L-02220 CCRCC Methylation_Array tissue_normal CPT0104580006 204373100047_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 57dfc966-01f5-49ef-b4cb-70d56a1138e9 0fece859d5e9fe2d5da265f0e309fc5b {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.MethArray.Red.T C3L-02220 CCRCC Methylation_Array tumor CPT0104550009 202234380064_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 5ebc7209-59ed-4529-bbc9-559f31974934 9f0af6eaab8a9d4596f52b56a41eeb94 {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor"} -C3L-02220.miRNA-Seq.S38_L007_R1.T C3L-02220 CCRCC miRNA-Seq tumor CPT0104550006 181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L007_R1_001.unaln.bam 286705573 BAM S38_L007_R1 unaligned CPTAC3 93286439-f23d-4270-830a-c6ce55c2b26c c769242c49e917351f559a1942b4f41f {"aliquot_tag": "ALQ_8abdd46b", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02220.miRNA-Seq.T.hg38 C3L-02220 CCRCC miRNA-Seq tumor CPT0104550006 1084d604-caa5-4799-9b3a-3eb2b9cd7959_mirnaseq_gdc_realn.bam 315711123 BAM harmonized CPTAC3 13e804e0-810c-4c54-8b20-e0ff18f5ba7d e9378103d2e7679b2582df68a2096b94 {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor"} -C3L-02220.RNA-Seq.chimeric.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.chimeric.gdc_realn.bam 21410300 BAM chimeric harmonized CPTAC3 fc99ab3a-f985-4f62-b6ec-9a71e73ff191 01f01da56f5ac7cdb2717e67c2081d54 {"aliquot_tag": "ALQ_e2920d4b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.RNA-Seq.chimeric.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.chimeric.gdc_realn.bam 38246344 BAM chimeric harmonized CPTAC3 49d11ccd-6db1-48bf-814d-e4513122f8a9 2c8cc3d9bc2d46883046801f7f033f32 {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor"} -C3L-02220.RNA-Seq.genomic.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.genomic.gdc_realn.bam 6880264495 BAM genomic harmonized CPTAC3 e0496c94-cfe5-47c9-9363-7fecabbc9da9 c5d39a010436c988730457c8c2813e70 {"aliquot_tag": "ALQ_e2920d4b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.RNA-Seq.genomic.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.genomic.gdc_realn.bam 8322379383 BAM genomic harmonized CPTAC3 e79fd7c7-414d-4f87-bc2a-bcea68707013 16e3081ef890a0834282d709fa77abda {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor"} -C3L-02220.RNA-Seq.S4_L007_R1.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3921696675 FASTQ S4_L007_R1 unaligned CPTAC3 bcf85c94-d8cd-46ff-a2df-161588ca1f6f f62a18d22f922c9385b131f65bc87ad8 {"aliquot_tag": "ALQ_8abdd46b", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02220.RNA-Seq.S4_L007_R2.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4244846603 FASTQ S4_L007_R2 unaligned CPTAC3 f6afce03-6c2f-4991-aea2-79eed1c82fd7 4cd4c9a0fae3da102ed1ee40af2ee494 {"aliquot_tag": "ALQ_8abdd46b", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02220.RNA-Seq.S7_L008_R1.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 3177019934 FASTQ S7_L008_R1 unaligned CPTAC3 7ba1a462-a098-4878-be3d-d1cbab10a167 8d1606e5aaf7ef3dbf0b77aa4eeab671 {"aliquot_tag": "ALQ_e2920d4b", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.RNA-Seq.S7_L008_R2.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 3303631613 FASTQ S7_L008_R2 unaligned CPTAC3 5a913799-c4f1-45e8-af63-51b364415df8 4f542ff029c8a74d1a3280855ee6317b {"aliquot_tag": "ALQ_e2920d4b", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.RNA-Seq.transcriptome.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.transcriptome.gdc_realn.bam 8488730235 BAM transcriptome harmonized CPTAC3 acd5b40e-d96b-4af2-b13c-118c3087c9ae b65682fb93c1de19c106344f831986d4 {"aliquot_tag": "ALQ_e2920d4b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.RNA-Seq.transcriptome.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.transcriptome.gdc_realn.bam 11097893266 BAM transcriptome harmonized CPTAC3 66609ef9-a3db-4629-b211-a5c6606e6fa9 49a45a4af76217103b7e8952dcf07baf {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor"} -C3L-02220.WGS.A C3L-02220 CCRCC WGS tissue_normal CPT0104580006 CPT0104580006.WholeGenome.RP-1303.bam 55760920782 BAM aligned CPTAC3 ec8748b9-900d-457b-83e7-c770de641352 318ddff9fd1f039c9a33a0b0e648e4c7 {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.WGS.A.hg38 C3L-02220 CCRCC WGS tissue_normal CPT0104580006 71c5938f-6621-4252-9c6a-801c3dab59ac_wgs_gdc_realn.bam 81111833299 BAM harmonized CPTAC3 5efdda70-d11d-47ae-a064-4a1ec1ee8375 37c4bab192c04a4f4e6af7b92f4a214c {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.WGS.N C3L-02220 CCRCC WGS blood_normal CPT0105170002 CPT0105170002.WholeGenome.RP-1303.bam 62143636160 BAM aligned CPTAC3 d7d9af3c-d7e6-48d9-9afc-61a4efa24d97 c2e0ad9c96c9bade3a7c2568fddf7f18 {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02220.WGS.N.hg38 C3L-02220 CCRCC WGS blood_normal CPT0105170002 cf340692-0b4f-4388-91af-ee6435c00602_wgs_gdc_realn.bam 89254636188 BAM harmonized CPTAC3 bef45cad-7f41-43d4-91b2-77a5184fce36 d07dd89e9e43766965a66f5fec7152ef {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02220.WGS.T C3L-02220 CCRCC WGS tumor CPT0104550009 CPT0104550009.WholeGenome.RP-1303.bam 66990668181 BAM aligned CPTAC3 e931e081-6efd-4cd5-aa91-597473b72108 4e0376205ba7b02ae2b29507a3b4808b {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor"} -C3L-02220.WGS.T.hg38 C3L-02220 CCRCC WGS tumor CPT0104550009 06cc347e-536f-40fe-96dd-799cdedecbf5_wgs_gdc_realn.bam 98821699573 BAM harmonized CPTAC3 9954f25a-04c2-4ec9-80da-ae65c30587e4 9b30d701a118e89e897842ccd091002e {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor"} -C3L-02220.WXS.A C3L-02220 CCRCC WXS tissue_normal CPT0104580006 CPT0104580006.WholeExome.RP-1303.bam 24959408651 BAM aligned CPTAC3 034caead-e039-429f-acdf-8a3f269bf98d 1623189ae13958cac2fc6fda09c0d1a6 {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.WXS.A.hg38 C3L-02220 CCRCC WXS tissue_normal CPT0104580006 71c5938f-6621-4252-9c6a-801c3dab59ac_wxs_gdc_realn.bam 33358913547 BAM harmonized CPTAC3 b9182210-2e93-493b-974c-a98dd53d36fc 3b0ea25012e09ad016c7f15d97acbc0a {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02220.WXS.N C3L-02220 CCRCC WXS blood_normal CPT0105170002 CPT0105170002.WholeExome.RP-1303.bam 26317093177 BAM aligned CPTAC3 6dc2a824-e439-43a1-a2ba-61640813b41d d757ff15fb7742babd163c8370c8e033 {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02220.WXS.N.hg38 C3L-02220 CCRCC WXS blood_normal CPT0105170002 cf340692-0b4f-4388-91af-ee6435c00602_wxs_gdc_realn.bam 36637620689 BAM harmonized CPTAC3 b4be1a54-5d63-4f29-bc5d-473db4987da6 fb9deddec8b79d643f3e656c11be92de {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02220.WXS.T C3L-02220 CCRCC WXS tumor CPT0104550009 CPT0104550009.WholeExome.RP-1303.bam 37096571797 BAM aligned CPTAC3 45de3406-0def-46fe-8d27-ba2671ea2665 f696885ba5cb0e9909efbc7630cf51d4 {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor"} -C3L-02220.WXS.T.hg38 C3L-02220 CCRCC WXS tumor CPT0104550009 06cc347e-536f-40fe-96dd-799cdedecbf5_wxs_gdc_realn.bam 51462620045 BAM harmonized CPTAC3 c7b0b45e-09b1-4921-8e24-918ba56a333b 2099754cfeed5d90c98ff81acf468949 {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor"} -C3L-02345.MethArray.Green.A C3L-02345 LUAD Methylation_Array tissue_normal CPT0114010009 203028200014_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cd516f95-c131-47d6-9559-6713d01d0d37 d4175b03e756b0b453aef0970016ac60 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.MethArray.Green.T C3L-02345 LUAD Methylation_Array tumor CPT0113990009 202234380051_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 baf7b6b8-bb5f-4b79-90ab-514e0b93ceee 97522eaf6c2cfe1ef45754b94b371035 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor"} -C3L-02345.MethArray.Red.A C3L-02345 LUAD Methylation_Array tissue_normal CPT0114010009 203028200014_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 346580ca-aa68-43f8-9aa6-6839b20fd97e e80e26643224735166ffabcb105d5ed2 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.MethArray.Red.T C3L-02345 LUAD Methylation_Array tumor CPT0113990009 202234380051_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 f5884947-f565-4847-8139-3b82f5660e3a 4aae7331c9a5ebcb6ba88f685db0a666 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor"} -C3L-02345.miRNA-Seq.A.hg38 C3L-02345 LUAD miRNA-Seq tissue_normal CPT0114010006 72d4f312-7a7b-4573-9d24-cd0c6251971a_mirnaseq_gdc_realn.bam 262862798 BAM harmonized CPTAC3 ec613603-14db-468e-b174-90db1fc4fce5 c65094703b7518c2cad53331ed31385f {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.miRNA-Seq.S21_L005_R1.A C3L-02345 LUAD miRNA-Seq tissue_normal CPT0114010006 181108_UNC31-K00269_0162_AH255GBBXY_TCATTC_S21_L005_R1_001.unaln.bam 239631758 BAM S21_L005_R1 unaligned CPTAC3 5836abfa-b9b9-48ca-8c7d-85e3b0ffbc72 32bedfcf2c7ce518e647c6fb19f0c331 {"aliquot_tag": "ALQ_e35ae386", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.miRNA-Seq.S38_L002_R1.T C3L-02345 LUAD miRNA-Seq tumor CPT0113990006 181113_UNC31-K00269_0164_AH23NNBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 230688650 BAM S38_L002_R1 unaligned CPTAC3 9341578f-70ce-4b41-b6da-adb9ffad8c04 babaffa36a27af94f331ae18af08986b {"aliquot_tag": "ALQ_3182c701", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02345.miRNA-Seq.T.hg38 C3L-02345 LUAD miRNA-Seq tumor CPT0113990006 3b62abff-f151-4c11-8341-53d075051a91_mirnaseq_gdc_realn.bam 248342070 BAM harmonized CPTAC3 beb8999d-e551-4688-b0fd-37cc3ee2c956 920b76bda9d37d25df805bb506035121 {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor"} -C3L-02345.RNA-Seq.chimeric.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.chimeric.gdc_realn.bam 119309372 BAM chimeric harmonized CPTAC3 295f10b2-ae58-4c1e-8a3f-60bc6718aac5 585fad29daf1c51370300a6f34a6ffc7 {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.RNA-Seq.chimeric.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.chimeric.gdc_realn.bam 135668710 BAM chimeric harmonized CPTAC3 10bd35ac-2a1e-4352-b2e5-3e77a30bfb77 bb6f2e9bfe7056f10f8dca398291ea1a {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor"} -C3L-02345.RNA-Seq.genomic.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.genomic.gdc_realn.bam 7702618161 BAM genomic harmonized CPTAC3 61a913d0-b4e3-440b-90d7-45586fc02d12 812df53a81fe331a58c4821a3ad18dad {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.RNA-Seq.genomic.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.genomic.gdc_realn.bam 8106143150 BAM genomic harmonized CPTAC3 3e4af998-5fa3-43f9-a24b-025b3a08fb63 e0f08afc05c4a1e60cbc5c1a6868f05e {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor"} -C3L-02345.RNA-Seq.S2_L001_R1.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3581676275 FASTQ S2_L001_R1 unaligned CPTAC3 72afe5df-b108-4ec1-abf7-bc8e471dbce4 295305975f492b73c8c31797250b8249 {"aliquot_tag": "ALQ_e35ae386", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.RNA-Seq.S2_L001_R2.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4028831044 FASTQ S2_L001_R2 unaligned CPTAC3 6df3b6f1-b54b-4aee-94d5-996948338a45 c62af4b6423c1c65c1159f2e8af38eaf {"aliquot_tag": "ALQ_e35ae386", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.RNA-Seq.S8_L003_R1.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R1_001.fastq.gz 3619231221 FASTQ S8_L003_R1 unaligned CPTAC3 49cbf08a-6e13-47bf-a3b3-775ef3c32be9 9bca6b528a6f3065b3f9c47b7ec7dfc4 {"aliquot_tag": "ALQ_3182c701", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02345.RNA-Seq.S8_L003_R2.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R2_001.fastq.gz 3665965485 FASTQ S8_L003_R2 unaligned CPTAC3 b40810ac-c2d7-4c0d-b35d-f8f3d778d334 134be0dbaed39fff836abb4292c3ddef {"aliquot_tag": "ALQ_3182c701", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02345.RNA-Seq.transcriptome.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.transcriptome.gdc_realn.bam 8905669244 BAM transcriptome harmonized CPTAC3 fa992c18-e377-4ff3-9af6-a540b0c2c11c 1b5b65f30fa05cb235650560e057d1cd {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.RNA-Seq.transcriptome.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.transcriptome.gdc_realn.bam 9305233421 BAM transcriptome harmonized CPTAC3 36c6c4c4-9fbc-45d1-88d7-77ef29fbc394 3e95ccb0001265c7a6f18a75aecbea2b {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor"} -C3L-02345.WGS.A C3L-02345 LUAD WGS tissue_normal CPT0114010009 CPT0114010009.WholeGenome.RP-1303.bam 58094166787 BAM aligned CPTAC3 5e2afbdd-0ad1-48cb-afb3-75758ae06817 7be94ff4029ec8e50c5ee1ddd9165f66 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.WGS.A.hg38 C3L-02345 LUAD WGS tissue_normal CPT0114010009 a3d69712-233d-44be-9250-d34413b0a823_wgs_gdc_realn.bam 83937489404 BAM harmonized CPTAC3 a9910513-7dfa-45a3-8463-76a51c98f422 9c0149a837148f433f5132d7e3c835d8 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.WGS.N C3L-02345 LUAD WGS blood_normal CPT0115310002 CPT0115310002.WholeGenome.RP-1303.bam 59721312039 BAM aligned CPTAC3 1e266d1b-c7ee-421c-bfb1-9acc61252d84 f2cff7e30f89e10130c075a2e4f664ba {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal"} -C3L-02345.WGS.N.hg38 C3L-02345 LUAD WGS blood_normal CPT0115310002 731f2bed-8215-40fc-a04f-4e73f526767c_wgs_gdc_realn.bam 87160440093 BAM harmonized CPTAC3 0093e67c-d2e2-4fbb-a121-d20689aa2a9a 1f630b4f53bc8ee397c94804d734ba3d {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal"} -C3L-02345.WGS.T C3L-02345 LUAD WGS tumor CPT0113990009 CPT0113990009.WholeGenome.RP-1303.bam 66386425474 BAM aligned CPTAC3 9b05a2d2-dca2-45fb-afac-ab194aa3c137 b6f792434a8156ab8f8f63daf4081e0b {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor"} -C3L-02345.WGS.T.hg38 C3L-02345 LUAD WGS tumor CPT0113990009 2ff27509-55ea-48db-9380-41a440e2cf4d_wgs_gdc_realn.bam 97275199158 BAM harmonized CPTAC3 203f456c-37c9-4ef0-a3bf-87294f00ea80 e09ba6569cdd92dd3f96f3901f1937c0 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor"} -C3L-02345.WXS.A C3L-02345 LUAD WXS tissue_normal CPT0114010009 CPT0114010009.WholeExome.RP-1303.bam 28684734858 BAM aligned CPTAC3 ad0f6646-93ce-47ef-816c-379d0f40c830 b449e93a23fa54625499d7ec3491e94a {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.WXS.A.hg38 C3L-02345 LUAD WXS tissue_normal CPT0114010009 a3d69712-233d-44be-9250-d34413b0a823_wxs_gdc_realn.bam 38714457635 BAM harmonized CPTAC3 dd8f7685-e250-472e-9d73-58905e82d65d b777fc1cec607ebf9f64e5695c8b530b {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02345.WXS.N C3L-02345 LUAD WXS blood_normal CPT0115310002 CPT0115310002.WholeExome.RP-1303.bam 36794308485 BAM aligned CPTAC3 c8c4e9cb-8620-46ff-a2a2-0cf81f401f67 d1bb1b68664f4feb2d5469e4c0cce4e3 {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal"} -C3L-02345.WXS.N.hg38 C3L-02345 LUAD WXS blood_normal CPT0115310002 731f2bed-8215-40fc-a04f-4e73f526767c_wxs_gdc_realn.bam 49588501488 BAM harmonized CPTAC3 33015297-0979-437b-b923-816699c2cc83 6f0aea9b59de37e7b6d38b6724f7602c {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal"} -C3L-02345.WXS.T C3L-02345 LUAD WXS tumor CPT0113990009 CPT0113990009.WholeExome.RP-1303.bam 28398148639 BAM aligned CPTAC3 1b452276-f1ab-4e73-8204-776d3a08cbad b78b35c29d6a95c5dfb2491a4bd0cdaf {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor"} -C3L-02345.WXS.T.hg38 C3L-02345 LUAD WXS tumor CPT0113990009 2ff27509-55ea-48db-9380-41a440e2cf4d_wxs_gdc_realn.bam 38749221225 BAM harmonized CPTAC3 74c85236-3626-426a-8c3c-d0185c9520e7 1da3ab1026fdee86d763affe75f889b9 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor"} -C3L-02346.MethArray.Green.A C3L-02346 CCRCC Methylation_Array tissue_normal CPT0112490006 204930630068_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f397812a-7612-4a1d-8949-162c2f3616f1 a73042e1f2dd0804a786ac4635f6b4ba {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.MethArray.Green.T C3L-02346 CCRCC Methylation_Array tumor CPT0112460009 203219650164_R04C01_Grn.idat 13676235 IDAT Green NA CPTAC3 bf925fd8-90a4-412e-bf96-b6380e460619 4d036b21069e227e4e8038493cf985d9 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor"} -C3L-02346.MethArray.Red.A C3L-02346 CCRCC Methylation_Array tissue_normal CPT0112490006 204930630068_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 f817cf6d-1f92-437f-bad4-87c371e7cebe db4a48140a49d83b7cfc8e2ef186e3eb {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.MethArray.Red.T C3L-02346 CCRCC Methylation_Array tumor CPT0112460009 203219650164_R04C01_Red.idat 13676235 IDAT Red NA CPTAC3 8e18f0a8-a7b3-413d-8ed1-1d419b8a4d78 67eba069119c741b06ec57ad09395770 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor"} -C3L-02346.miRNA-Seq.A.hg38 C3L-02346 CCRCC miRNA-Seq tissue_normal CPT0112490009 167d20d1-995b-45d0-83e0-c5377d9808a3_mirnaseq_gdc_realn.bam 198103894 BAM harmonized CPTAC3 c19f33cd-7ca9-4d05-bc25-f564a2bb1741 b99998b651c7a2413fb81a631078a73d {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.miRNA-Seq.S25_L003_R1.T C3L-02346 CCRCC miRNA-Seq tumor CPT0112460006 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTGAT_S25_L003_R1_001.unaln.bam 203845797 BAM S25_L003_R1 unaligned CPTAC3 7f936d30-83b0-48ab-811f-0780cc0ca49b 07ae4f0cecdad765b000a339fe45391b {"aliquot_tag": "ALQ_a93b48ba", "sample": "S25", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02346.miRNA-Seq.S4_L002_R1.A C3L-02346 CCRCC miRNA-Seq tissue_normal CPT0112490009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L002_R1_001.unaln.bam 180584877 BAM S4_L002_R1 unaligned CPTAC3 2ae3a967-66c2-4399-8ce4-fd7a69afba5c 6c053ce6bbea285e9781060d27846265 {"aliquot_tag": "ALQ_bbd4c2fa", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.miRNA-Seq.T.hg38 C3L-02346 CCRCC miRNA-Seq tumor CPT0112460006 d16758da-9b87-4f83-8eec-a29e7de059ae_mirnaseq_gdc_realn.bam 221614035 BAM harmonized CPTAC3 b2ce5c8e-5f62-4be0-b869-d88466f411ac 8ec98518bc6ea01817076b3b7dc92671 {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor"} -C3L-02346.RNA-Seq.chimeric.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.chimeric.gdc_realn.bam 410765802 BAM chimeric harmonized CPTAC3 1150f70a-c003-4caf-9c4e-ef42211a97e0 32a073897a07cb9a3be3dbdfd91116fe {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.RNA-Seq.chimeric.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.chimeric.gdc_realn.bam 32401491 BAM chimeric harmonized CPTAC3 87078763-9199-4a4f-bb4f-92fcaa852666 06b154e97b8a4a18ba661851883d0c8e {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor"} -C3L-02346.RNA-Seq.genomic.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.genomic.gdc_realn.bam 8978287215 BAM genomic harmonized CPTAC3 19b06212-dd4b-46a3-8555-4ac99dcf4a03 77f23bb7b1b35abe3047418e9bba58b1 {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.RNA-Seq.genomic.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.genomic.gdc_realn.bam 9290841032 BAM genomic harmonized CPTAC3 ccc8b5d8-cc91-4310-9656-227772f5f72d 6686a4eb5fd5881dc608d4fdc398bfd5 {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor"} -C3L-02346.RNA-Seq.S10_L003_R1.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 3928510648 FASTQ S10_L003_R1 unaligned CPTAC3 d9df4270-b0b4-40bc-932e-8c9a3dcbbc41 497495e561b791df02265a3aebc2a4d6 {"aliquot_tag": "ALQ_bbd4c2fa", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.RNA-Seq.S10_L003_R2.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 4283208093 FASTQ S10_L003_R2 unaligned CPTAC3 c6591498-9a3b-4295-a68c-59caa668a1c0 92148154984a810b45dd8fd74ee1cdf2 {"aliquot_tag": "ALQ_bbd4c2fa", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.RNA-Seq.S15_L004_R1.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4393155105 FASTQ S15_L004_R1 unaligned CPTAC3 a64f3486-3e96-471d-a7f0-0ae1de264ffa d41735b398bd8cc59e7cd562e1057b70 {"aliquot_tag": "ALQ_a93b48ba", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02346.RNA-Seq.S15_L004_R2.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R2_001.fastq.gz 4274841978 FASTQ S15_L004_R2 unaligned CPTAC3 efcd8633-213d-463c-a2d0-c4e7a360471e 7b401cb5cebef8b02b8b069363d5466e {"aliquot_tag": "ALQ_a93b48ba", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02346.RNA-Seq.transcriptome.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.transcriptome.gdc_realn.bam 8750372899 BAM transcriptome harmonized CPTAC3 2e7ccb92-2a62-4c9f-a95d-8ed45a64c9e9 8b856b88ddf01c6950bfe4cae59d869b {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.RNA-Seq.transcriptome.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.transcriptome.gdc_realn.bam 11881189889 BAM transcriptome harmonized CPTAC3 23bcd356-2e59-4201-b297-2b43812577a1 80710fe2e87f3488d570e6c92e3decef {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor"} -C3L-02346.WGS.A C3L-02346 CCRCC WGS tissue_normal CPT0112490006 CPT0112490006.WholeGenome.RP-1303.bam 51934510050 BAM aligned CPTAC3 22158af8-54b6-4764-89fe-0000f425e32f b7aa0bdc902bb7a76907e6bf97ed66d2 {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.WGS.A.hg38 C3L-02346 CCRCC WGS tissue_normal CPT0112490006 c5f3604a-5b18-4028-96a6-b61b37b4092d_wgs_gdc_realn.bam 76124597718 BAM harmonized CPTAC3 5008b1cd-a3c1-481c-831b-c16e758a8e53 dda60ec7b7c08c032f1710f6505ce70c {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.WGS.N C3L-02346 CCRCC WGS blood_normal CPT0115150002 CPT0115150002.WholeGenome.RP-1303.bam 64649297306 BAM aligned CPTAC3 9d262091-a8a8-4afe-9d06-30c41ac8cb69 0f4bb92f9129ce6f53469541622141e6 {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02346.WGS.N.hg38 C3L-02346 CCRCC WGS blood_normal CPT0115150002 b7aa8656-fd17-4c3b-ace0-9a27f91ae3b1_wgs_gdc_realn.bam 94322908755 BAM harmonized CPTAC3 7240eea8-e5fb-4f99-9313-1583e596e799 39955e0fec6a41d3d133f6cfb24f4272 {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02346.WGS.T C3L-02346 CCRCC WGS tumor CPT0112460009 CPT0112460009.WholeGenome.RP-1303.bam 50610305807 BAM aligned CPTAC3 b96c7cd1-1e82-49d5-9432-71ea09d9390e 3f8a2591f8f36207df665af6f572217b {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor"} -C3L-02346.WGS.T.hg38 C3L-02346 CCRCC WGS tumor CPT0112460009 d12b8af9-30a5-4d53-ac59-119e4ff49ab4_wgs_gdc_realn.bam 74149505767 BAM harmonized CPTAC3 41705a4e-87e0-408f-a4ce-a1a0a2194ee0 bd75ba362c0e1b594852c94983c761ab {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor"} -C3L-02346.WXS.A C3L-02346 CCRCC WXS tissue_normal CPT0112490006 CPT0112490006.WholeExome.RP-1303.bam 22832630678 BAM aligned CPTAC3 bcc0707b-66f8-4deb-b42f-7ecf5e9f9537 7ee1fd1682c56f479a639e34899441ad {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.WXS.A.hg38 C3L-02346 CCRCC WXS tissue_normal CPT0112490006 c5f3604a-5b18-4028-96a6-b61b37b4092d_wxs_gdc_realn.bam 31718219048 BAM harmonized CPTAC3 60b6e51d-75ff-42e0-9e04-19d6aab751fa f9b33a2655b1a3089280de4d94ae4bd9 {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02346.WXS.N C3L-02346 CCRCC WXS blood_normal CPT0115150002 CPT0115150002.WholeExome.RP-1303.bam 29084598116 BAM aligned CPTAC3 fd45d880-a8b0-43dc-abbb-27e2315a7caa e8a380c59ccdfabbb4728226d460afab {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02346.WXS.N.hg38 C3L-02346 CCRCC WXS blood_normal CPT0115150002 b7aa8656-fd17-4c3b-ace0-9a27f91ae3b1_wxs_gdc_realn.bam 39248361335 BAM harmonized CPTAC3 6c1d5538-0099-4a94-90b6-9fce3261af1b 4228911248d240b76e095615d9791dd2 {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02346.WXS.T C3L-02346 CCRCC WXS tumor CPT0112460009 CPT0112460009.WholeExome.RP-1303.bam 23876759681 BAM aligned CPTAC3 8b013542-b1e0-45ec-88a7-2fd531080e08 eee82fad47ebb5443ec28c7ee946eb05 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor"} -C3L-02346.WXS.T.hg38 C3L-02346 CCRCC WXS tumor CPT0112460009 d12b8af9-30a5-4d53-ac59-119e4ff49ab4_wxs_gdc_realn.bam 32818937733 BAM harmonized CPTAC3 c627d967-a99c-485d-beaa-085568a44320 6f7b05cd265332f0ded72f9adfeec515 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor"} -C3L-02347.MethArray.Green.T C3L-02347 UCEC Methylation_Array tumor CPT0113850009 203219670150_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8951ad75-79f1-41ba-93dc-06cf6d1b37b7 02a304b51ce8f2e0e6ca69e64a6b8f50 {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor"} -C3L-02347.MethArray.Red.T C3L-02347 UCEC Methylation_Array tumor CPT0113850009 203219670150_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 58c916b8-977c-4742-9236-5c2a43ab6cf1 876afbefb75af67975045ef14e8bbadb {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor"} -C3L-02347.miRNA-Seq.A.hg38 C3L-02347 UCEC miRNA-Seq tissue_normal CPT0113860009 5a07ec02-6cca-4c9a-b845-cc16fb51938f_mirnaseq_gdc_realn.bam 295177719 BAM harmonized CPTAC3 bbff4d11-aac0-49a6-9b10-6b9c26f05920 cc182aeb84ceac56adf4a0a05832e766 {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.miRNA-Seq.S24_L003_R1.A C3L-02347 UCEC miRNA-Seq tissue_normal CPT0113860009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L003_R1_001.unaln.bam 260011031 BAM S24_L003_R1 unaligned CPTAC3 55d76d81-9c41-400a-88c2-11126e80d105 d68e3de1471e8d40ea6d2cac95e20598 {"aliquot_tag": "ALQ_e8319ee4", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.miRNA-Seq.S31_L003_R1.T C3L-02347 UCEC miRNA-Seq tumor CPT0113850006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACGAT_S31_L003_R1_001.unaln.bam 223438103 BAM S31_L003_R1 unaligned CPTAC3 3d0b4474-f423-4867-993e-f93961e61447 1efcdd8c151868b0dad2a678c73dcdb2 {"aliquot_tag": "ALQ_3f2ef9a5", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02347.miRNA-Seq.T.hg38 C3L-02347 UCEC miRNA-Seq tumor CPT0113850006 30d22cc0-122f-4fb5-8826-9fe825580dd0_mirnaseq_gdc_realn.bam 246998067 BAM harmonized CPTAC3 721f2013-25cc-4c51-8435-33d4127c1c71 8d0d3cbbfa47a26209015d60333254ef {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.chimeric.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.chimeric.gdc_realn.bam 71914814 BAM chimeric harmonized CPTAC3 246aa25e-3bc4-48f6-9394-7155644688bf 163fb099402df26c3c2dd29d980d4971 {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.RNA-Seq.chimeric.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.chimeric.gdc_realn.bam 32394585 BAM chimeric harmonized CPTAC3 20578204-e181-4385-a703-fc6035d2091c b5c8be89591b20753e606536ae32916b {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.chimeric.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.chimeric.gdc_realn.bam 64283576 BAM chimeric harmonized CPTAC3 bf70882a-062e-4d9c-a635-089e24c3beeb ee4bacb829323fbc39555d9fd1bd3985 {"aliquot_tag": "ALQ_e891a7ef", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.genomic.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.genomic.gdc_realn.bam 9774574115 BAM genomic harmonized CPTAC3 8a3f16ff-19cb-4a98-ac78-19127c95348d 21e13533edf6fb9b454e0e198cf1bd2b {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.RNA-Seq.genomic.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.genomic.gdc_realn.bam 10325701776 BAM genomic harmonized CPTAC3 3c93869c-4350-4991-a752-ee0ac3801026 249183d4c6ae4ffb66d7d04edd833d59 {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.genomic.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.genomic.gdc_realn.bam 5922096398 BAM genomic harmonized CPTAC3 4b899a12-ef34-4ee7-8164-ebc37fc59d3a b95911cf0bc2f7803308d202da02e2f2 {"aliquot_tag": "ALQ_e891a7ef", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.S10_L003_R1.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R1_001.fastq.gz 4608723693 FASTQ S10_L003_R1 unaligned CPTAC3 5dfdde84-1e23-4280-8b55-4132629b16b7 d2d305ad1da0297a08e9c2e9216c174a {"aliquot_tag": "ALQ_3f2ef9a5", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.S10_L003_R2.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5000703190 FASTQ S10_L003_R2 unaligned CPTAC3 dc6c11b1-6e28-44d2-aac1-10d5062b327c 7100cc36cae4670a8033d3cb6fa93356 {"aliquot_tag": "ALQ_3f2ef9a5", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.S19_L007_R1.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R1_001.fastq.gz 4429373823 FASTQ S19_L007_R1 unaligned CPTAC3 abbd8419-e029-4f17-b719-452c26a4bee5 4074b60669f0ebbf954cae28406b1fee {"aliquot_tag": "ALQ_e8319ee4", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.RNA-Seq.S19_L007_R2.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R2_001.fastq.gz 4701576640 FASTQ S19_L007_R2 unaligned CPTAC3 89251cd0-b752-4190-ab82-45a6e1d10bae 6d1b5daabb90f4b179450543ad8fd59b {"aliquot_tag": "ALQ_e8319ee4", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.RNA-Seq.S70_R1.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R1_001.fastq.gz 3547212170 FASTQ S70_R1 unaligned CPTAC3 853dc09c-ac82-4d67-8af0-0b795b8f7850 ac9eeb5889e3e1f131d3449b33cff4f7 {"aliquot_tag": "ALQ_e891a7ef", "sample": "S70", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.S70_R2.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R2_001.fastq.gz 3664246903 FASTQ S70_R2 unaligned CPTAC3 ec783cff-cde6-456d-b52b-5b4057b8f6ed 7679f894032394ae749ba6c211d6f1fe {"aliquot_tag": "ALQ_e891a7ef", "sample": "S70", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.transcriptome.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.transcriptome.gdc_realn.bam 10167090773 BAM transcriptome harmonized CPTAC3 e0e5c1ae-1201-4022-bdc9-26ade375e3b7 559a50fc6ef13f3f5dbfe897b8650370 {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.RNA-Seq.transcriptome.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.transcriptome.gdc_realn.bam 12055231179 BAM transcriptome harmonized CPTAC3 734cb83c-b5e2-4684-a972-0d43895b344f d9cfc9802f7e5f04ab780d43d9875511 {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor"} -C3L-02347.RNA-Seq.transcriptome.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.transcriptome.gdc_realn.bam 3276911283 BAM transcriptome harmonized CPTAC3 c91453b6-29a6-45c9-b168-d5979b54e01f 7bb07168a6be355ffc17e70fe9801900 {"aliquot_tag": "ALQ_e891a7ef", "gdc_sample_type": "Primary Tumor"} -C3L-02347.WGS.A C3L-02347 UCEC WGS tissue_normal CPT0113860006 CPT0113860006.WholeGenome.RP-1303.bam 53388058103 BAM aligned CPTAC3 7e0e8e0d-a652-4030-8f32-fd248f6ee6cc ed3b34d0a30d702e874afb30c31c6b24 {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.WGS.A.hg38 C3L-02347 UCEC WGS tissue_normal CPT0113860006 abb5244a-d9bd-4220-907c-85ed67bbb1ca_wgs_gdc_realn.bam 78161109946 BAM harmonized CPTAC3 91c88ca7-21dd-4b8d-9056-281dc071246d ae389dbc8b8597a0777f0fca29a18322 {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.WGS.N C3L-02347 UCEC WGS blood_normal CPT0115290002 CPT0115290002.WholeGenome.RP-1303.bam 58808161174 BAM aligned CPTAC3 f26a76c8-1180-4dae-8594-39a650cb3046 8758d6be442a7e33f951b67c2a7b0742 {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02347.WGS.N.hg38 C3L-02347 UCEC WGS blood_normal CPT0115290002 f313f074-39ce-4b85-b089-14dd0f779eef_wgs_gdc_realn.bam 84430999819 BAM harmonized CPTAC3 7aee66b5-ea0b-4437-88b6-8c6d5a50504a fb5a01b43a472fdb91f02265c1d1a273 {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02347.WGS.T C3L-02347 UCEC WGS tumor CPT0113850009 CPT0113850009.WholeGenome.RP-1303.bam 58104872813 BAM aligned CPTAC3 dee2a8b1-0625-4203-a629-e8f1ae746af6 60b0b4a87c1c22703f4fdcd8f03bb50d {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor"} -C3L-02347.WGS.T.hg38 C3L-02347 UCEC WGS tumor CPT0113850009 7656e417-b4b0-47d8-9ab4-5da0c7df5f2c_wgs_gdc_realn.bam 85272851258 BAM harmonized CPTAC3 2d1bdace-9a2b-4ae4-a390-150700f01f24 eb7be6d59bf74ead7439f16aab49cae6 {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor"} -C3L-02347.WXS.A C3L-02347 UCEC WXS tissue_normal CPT0113860006 CPT0113860006.WholeExome.RP-1303.bam 19488221539 BAM aligned CPTAC3 e985a443-ed07-489c-abb4-eb007af58060 94bb8f1a3cfe5ccbd95a4bbe54c0dd13 {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.WXS.A.hg38 C3L-02347 UCEC WXS tissue_normal CPT0113860006 abb5244a-d9bd-4220-907c-85ed67bbb1ca_wxs_gdc_realn.bam 26196289925 BAM harmonized CPTAC3 7f79bb4d-bab5-4083-9082-cbffafe05c24 2df7aadbf8ccb7ee05f499e226a1857d {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02347.WXS.N C3L-02347 UCEC WXS blood_normal CPT0115290002 CPT0115290002.WholeExome.RP-1303.bam 28104255045 BAM aligned CPTAC3 909cbe07-7ab9-4512-85cc-2543de855abd ab7bc158c9ad9c125e9a50201be57f1a {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02347.WXS.N.hg38 C3L-02347 UCEC WXS blood_normal CPT0115290002 f313f074-39ce-4b85-b089-14dd0f779eef_wxs_gdc_realn.bam 39645313258 BAM harmonized CPTAC3 d4040ace-c044-4f49-a271-7dcf2ae56d61 841bba55c8f26a2a8f9aedabf6dbd2ea {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02347.WXS.T C3L-02347 UCEC WXS tumor CPT0113850009 CPT0113850009.WholeExome.RP-1303.bam 22291211087 BAM aligned CPTAC3 a0483e28-f226-47df-80e8-6a36ccf654b8 52383107f5232bdd5c7559709a5087ad {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor"} -C3L-02347.WXS.T.hg38 C3L-02347 UCEC WXS tumor CPT0113850009 7656e417-b4b0-47d8-9ab4-5da0c7df5f2c_wxs_gdc_realn.bam 30302882928 BAM harmonized CPTAC3 68a1f482-caac-4f8c-9d33-62740dbbbd45 29810c76edfce4f8f174819ab9780b06 {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor"} -C3L-02348.MethArray.Green.A C3L-02348 LUAD Methylation_Array tissue_normal CPT0115090009 203028200023_R04C01_Grn.idat 13676238 IDAT Green NA CPTAC3 c2ca2ab0-033f-48e4-9a1b-c3204808615b b0a55938892d1d157917363ed92588f7 {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.MethArray.Green.T C3L-02348 LUAD Methylation_Array tumor CPT0115070009 202234380064_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c020f3f1-5883-4203-be6c-3ce1fb23f34f 2f5159e99584df89fd4f59c445aaff73 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor"} -C3L-02348.MethArray.Red.A C3L-02348 LUAD Methylation_Array tissue_normal CPT0115090009 203028200023_R04C01_Red.idat 13676238 IDAT Red NA CPTAC3 6249f101-5cb8-415d-95f1-c81323467dc2 4fd170edbabea13c0e599f567c2cc906 {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.MethArray.Red.T C3L-02348 LUAD Methylation_Array tumor CPT0115070009 202234380064_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 005adb00-134c-4c53-a7a0-4794b7667b8b d6f19ec1a8a84f0f997f97f2c19ebd37 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor"} -C3L-02348.miRNA-Seq.A.hg38 C3L-02348 LUAD miRNA-Seq tissue_normal CPT0115090006 9aa79f98-d384-46b6-bfd7-06e805841536_mirnaseq_gdc_realn.bam 237264030 BAM harmonized CPTAC3 30ecea49-36c3-4a34-8fee-e4c1fad4382b 133dd092534fb795c00918b4c6448922 {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.miRNA-Seq.S22_L005_R1.A C3L-02348 LUAD miRNA-Seq tissue_normal CPT0115090006 181108_UNC31-K00269_0162_AH255GBBXY_TCCCGA_S22_L005_R1_001.unaln.bam 211877763 BAM S22_L005_R1 unaligned CPTAC3 5e0058e3-b20f-4ca2-bf7f-bb578fcca5e2 466df12cea78b5e318bd1f953a259bc1 {"aliquot_tag": "ALQ_755da3f3", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.miRNA-Seq.S48_L003_R1.T C3L-02348 LUAD miRNA-Seq tumor CPT0115070006 181119_UNC31-K00269_0165_AH27WCBBXY_GGTAGC_S48_L003_R1_001.unaln.bam 203229394 BAM S48_L003_R1 unaligned CPTAC3 0a9a41f2-9374-40fc-b5c2-1a506c697d79 7dacd97747bd3ece82874e6d942c585c {"aliquot_tag": "ALQ_ca6d1d92", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02348.miRNA-Seq.T.hg38 C3L-02348 LUAD miRNA-Seq tumor CPT0115070006 4be684db-f3ea-4d64-8386-70899c50e7d9_mirnaseq_gdc_realn.bam 223237923 BAM harmonized CPTAC3 5c3b39f1-e536-4882-8b9a-c93d67574512 8030f5dd459c312e9c508492563faaaf {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor"} -C3L-02348.RNA-Seq.chimeric.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.chimeric.gdc_realn.bam 102044429 BAM chimeric harmonized CPTAC3 11e8ba14-b01a-4cf1-b6c0-4adb4bc6594f eef9eef976492f3344e05edd92481d01 {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.RNA-Seq.chimeric.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.chimeric.gdc_realn.bam 166367537 BAM chimeric harmonized CPTAC3 e3355a7b-26ae-4c39-b35b-5a08937b4ec0 00f1938cdbc7868318e016a6b4f10aa7 {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor"} -C3L-02348.RNA-Seq.genomic.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.genomic.gdc_realn.bam 8944078812 BAM genomic harmonized CPTAC3 d81998c8-138b-4a4a-be9b-46ae4ed9c762 8cee7b87d571cc87116c73d493eaaa87 {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.RNA-Seq.genomic.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.genomic.gdc_realn.bam 9314992269 BAM genomic harmonized CPTAC3 a05c8880-c5cf-4592-a940-f38435df8f8a a4fb382c11f0b39ed3bd9588d3e5d07b {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor"} -C3L-02348.RNA-Seq.S10_L003_R1.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R1_001.fastq.gz 4340031904 FASTQ S10_L003_R1 unaligned CPTAC3 ae598f4f-e0d0-408b-95af-5a66f66806e2 392b98ccf1ab50422c623342a2fdedfd {"aliquot_tag": "ALQ_ca6d1d92", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02348.RNA-Seq.S10_L003_R2.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R2_001.fastq.gz 4834437655 FASTQ S10_L003_R2 unaligned CPTAC3 1346e234-53d7-44ae-9586-96c827c2f94e 9f1afecdde11d99bfb3ab36a15d5014e {"aliquot_tag": "ALQ_ca6d1d92", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02348.RNA-Seq.S1_L001_R1.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R1_001.fastq.gz 4270003276 FASTQ S1_L001_R1 unaligned CPTAC3 1cdf25ca-920c-4f76-8bcf-6b55a52862cf 4131c0b036ccbe8b01c527335cfb30ff {"aliquot_tag": "ALQ_755da3f3", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.RNA-Seq.S1_L001_R2.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R2_001.fastq.gz 4696678825 FASTQ S1_L001_R2 unaligned CPTAC3 a8c23156-1897-4834-8e25-5be6c4e53be7 02f4625e2be0f3e27c39298b73109601 {"aliquot_tag": "ALQ_755da3f3", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.RNA-Seq.transcriptome.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.transcriptome.gdc_realn.bam 10945997575 BAM transcriptome harmonized CPTAC3 0277da03-7dd4-44c8-be44-8d1657812625 637b2fc2a402aa9d85d7f02b5055a6fb {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.RNA-Seq.transcriptome.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.transcriptome.gdc_realn.bam 11325335490 BAM transcriptome harmonized CPTAC3 8bad9ed2-bfb6-44b4-89b7-005a54b0d8e8 04e215130f703ac1845f0d627a946188 {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor"} -C3L-02348.WGS.A C3L-02348 LUAD WGS tissue_normal CPT0115090009 CPT0115090009.WholeGenome.RP-1303.bam 51412118987 BAM aligned CPTAC3 e0b20b6b-7783-4a41-8285-5fa8c3e89af1 68e83b2d40bd7f1130db89b3e415363d {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.WGS.A.hg38 C3L-02348 LUAD WGS tissue_normal CPT0115090009 c8f77a00-dd00-44bc-8a2e-6c802f975b40_wgs_gdc_realn.bam 75362403405 BAM harmonized CPTAC3 f8d9374d-ba50-4ed6-9c9e-ef2e00a1ef0f d3ecc935e5cce4bacbece07d05a5afac {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.WGS.N C3L-02348 LUAD WGS blood_normal CPT0115320002 CPT0115320002.WholeGenome.RP-1303.bam 54172491080 BAM aligned CPTAC3 7a7a1d6a-5e22-4d7f-8eab-8c8cbd662df6 616a6beebf171e07adc60833fd57ab78 {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal"} -C3L-02348.WGS.N.hg38 C3L-02348 LUAD WGS blood_normal CPT0115320002 d140c210-45d6-4aa0-9f78-cde6b7a29207_wgs_gdc_realn.bam 79368968869 BAM harmonized CPTAC3 518cb3c1-9b81-464a-9de0-b7ddbd3a3250 adc35540601fb08ff9cd768d03b3a9ef {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal"} -C3L-02348.WGS.T C3L-02348 LUAD WGS tumor CPT0115070009 CPT0115070009.WholeGenome.RP-1303.bam 74323682073 BAM aligned CPTAC3 8c1778f5-f38d-4eb7-a815-dcf6c31ae3fa b81aa8b1ffc9b98a54eba89d649f2f9b {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor"} -C3L-02348.WGS.T.hg38 C3L-02348 LUAD WGS tumor CPT0115070009 4a14d77a-990e-4cba-854c-856a434fa63a_wgs_gdc_realn.bam 110215792391 BAM harmonized CPTAC3 e86c17db-ab76-4cce-9bdc-7ef2d2288345 e6b42d722237429370dc9cb787c53a20 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor"} -C3L-02348.WXS.A C3L-02348 LUAD WXS tissue_normal CPT0115090009 CPT0115090009.WholeExome.RP-1303.bam 44602382788 BAM aligned CPTAC3 3f4fc458-fba9-46e5-8f92-91a09516d8cb d3416e4ad45b76f0beac3fb8f103aa46 {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.WXS.A.hg38 C3L-02348 LUAD WXS tissue_normal CPT0115090009 c8f77a00-dd00-44bc-8a2e-6c802f975b40_wxs_gdc_realn.bam 61252663449 BAM harmonized CPTAC3 069fc6cd-e124-46e5-bc07-59946e67f0de 7ccda218b04005815e007585433c5bea {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02348.WXS.N C3L-02348 LUAD WXS blood_normal CPT0115320002 CPT0115320002.WholeExome.RP-1303.bam 36520666700 BAM aligned CPTAC3 c6ed7e64-acaa-4213-a678-b2a470d55de5 f3ba87b334c5dd823b8c5780e7378da0 {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal"} -C3L-02348.WXS.N.hg38 C3L-02348 LUAD WXS blood_normal CPT0115320002 d140c210-45d6-4aa0-9f78-cde6b7a29207_wxs_gdc_realn.bam 50469998413 BAM harmonized CPTAC3 53b61719-ee3c-4685-8858-b324f6afa0bf c85c2effc5231532911a1532f6ab0061 {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal"} -C3L-02348.WXS.T C3L-02348 LUAD WXS tumor CPT0115070009 CPT0115070009.WholeExome.RP-1303.bam 29837277613 BAM aligned CPTAC3 c9084503-3f95-4810-80df-80d0dbac008a 7193de47fadf6f4dfe2b0f6dec408a1e {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor"} -C3L-02348.WXS.T.hg38 C3L-02348 LUAD WXS tumor CPT0115070009 4a14d77a-990e-4cba-854c-856a434fa63a_wxs_gdc_realn.bam 40774793992 BAM harmonized CPTAC3 7dde3446-fb2e-4207-a30d-c7708d8b26e5 6c53425891d8eaf578e73983fe2ee685 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor"} -C3L-02349.MethArray.Green.A C3L-02349 LSCC Methylation_Array tissue_normal CPT0112550006 203219670141_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b4667d9e-1e25-46d3-b024-e61470ae4175 203e9f358ab8a4ca9daac9c099978a3f {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.MethArray.Red.A C3L-02349 LSCC Methylation_Array tissue_normal CPT0112550006 203219670141_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 c49fc9d8-973f-4bbb-a85b-adea597073bb ddb09b9813f7c6dff01465c08703c24e {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.miRNA-Seq.A.hg38 C3L-02349 LSCC miRNA-Seq tissue_normal CPT0112550009 13f76cf2-63f8-41db-b6e8-22e8a75af357_mirnaseq_gdc_realn.bam 267290197 BAM harmonized CPTAC3 ca357a42-eb8d-4d65-a5ae-76fff7afd192 e990e5628df2495ff3b5987438f9b47b {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.miRNA-Seq.S34_L002_R1.A C3L-02349 LSCC miRNA-Seq tissue_normal CPT0112550009 181219_UNC31-K00269_0173_BHYGJJBBXX_CATTTT_S34_L002_R1_001.unaln.bam 239339606 BAM S34_L002_R1 unaligned CPTAC3 bb9fba8c-3c7a-4535-a0c6-ba9ef61035a6 8640824d7be4cefdb6037f22d60eac1b {"aliquot_tag": "ALQ_b578fc5e", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.miRNA-Seq.S4_L001_R1.T C3L-02349 LSCC miRNA-Seq tumor CPT0112540006 181219_UNC31-K00269_0173_BHYGJJBBXX_TGACCA_S4_L001_R1_001.unaln.bam 199045231 BAM S4_L001_R1 unaligned CPTAC3 a4706239-d87a-4e30-96d6-5846bb5c4719 a53250dcee89d6618eeb4bb3a668223c {"aliquot_tag": "ALQ_18a7c87f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02349.miRNA-Seq.T.hg38 C3L-02349 LSCC miRNA-Seq tumor CPT0112540006 f66e96e0-337f-4a7d-a11b-41f8cf478325_mirnaseq_gdc_realn.bam 218473355 BAM harmonized CPTAC3 f4d6054b-4241-49ec-82bc-3b11dd8f550d 18622945c75b5b784d0650ac13e1f48e {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor"} -C3L-02349.RNA-Seq.chimeric.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.chimeric.gdc_realn.bam 30645150 BAM chimeric harmonized CPTAC3 559ed92c-863d-4aa5-a9c6-4aa1cc5ce2d6 626de4d6fffdc2ca540009b45ff47893 {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.RNA-Seq.chimeric.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.chimeric.gdc_realn.bam 26103970 BAM chimeric harmonized CPTAC3 ded61a49-4fd2-4331-9958-02ebf9efb2f6 34c2ff0a1aa5ae5e0e2af7443c20390d {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor"} -C3L-02349.RNA-Seq.genomic.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.genomic.gdc_realn.bam 10230801754 BAM genomic harmonized CPTAC3 613b0530-7e84-41b6-9732-624c625c01b8 f507195908744d403c073528abaccba0 {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.RNA-Seq.genomic.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.genomic.gdc_realn.bam 7585394000 BAM genomic harmonized CPTAC3 32938798-2b5e-4211-b34b-d165d6efa458 f5e591b4f181e6bdb295c65f0a8bfe8c {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor"} -C3L-02349.RNA-Seq.S17_L005_R1.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4178774540 FASTQ S17_L005_R1 unaligned CPTAC3 0c46a21c-b247-4986-93d8-1349c2a4033d 564d56c76ee8df5ddafd8499de2ab018 {"aliquot_tag": "ALQ_b578fc5e", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.RNA-Seq.S17_L005_R2.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4527033850 FASTQ S17_L005_R2 unaligned CPTAC3 6551256d-3023-414d-8f66-9574a12944d5 61b7af49897c385ddd511254ee34ff17 {"aliquot_tag": "ALQ_b578fc5e", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.RNA-Seq.S20_L005_R1.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R1_001.fastq.gz 3434930401 FASTQ S20_L005_R1 unaligned CPTAC3 3ce560ec-b154-46d6-b204-a398180fb032 1376aa427b5532a04f2ea5894b2f6aac {"aliquot_tag": "ALQ_18a7c87f", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02349.RNA-Seq.S20_L005_R2.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R2_001.fastq.gz 3526817878 FASTQ S20_L005_R2 unaligned CPTAC3 f19fc187-52d3-4b66-978f-e46acbc1f4b8 4f3dd94e16e3c97735a1246e2b366c7d {"aliquot_tag": "ALQ_18a7c87f", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02349.RNA-Seq.transcriptome.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.transcriptome.gdc_realn.bam 11024482160 BAM transcriptome harmonized CPTAC3 3ffda287-3f72-44dc-a6f1-c2b71c821fe4 e5ed02602df7181cae09de6ef200f956 {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.RNA-Seq.transcriptome.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.transcriptome.gdc_realn.bam 10942556899 BAM transcriptome harmonized CPTAC3 08989de4-6598-426a-881f-df381c91ea00 f1631eacf7d3d392224cff1aaa6a1831 {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor"} -C3L-02349.WGS.A C3L-02349 LSCC WGS tissue_normal CPT0112550006 CPT0112550006.WholeGenome.RP-1303.bam 56642330763 BAM aligned CPTAC3 33e50219-83be-44e5-a174-6718f3dfe1f0 47b57cb11dc340fc462794ea17b83641 {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.WGS.A.hg38 C3L-02349 LSCC WGS tissue_normal CPT0112550006 27e94b6f-a024-4066-9511-05989a7c9124_wgs_gdc_realn.bam 81632153164 BAM harmonized CPTAC3 6cb5230a-e25f-422a-8da0-3246e5020e90 f8361d6475326c3e4cd0aa644b9970fe {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.WGS.N C3L-02349 LSCC WGS blood_normal CPT0115160002 CPT0115160002.WholeGenome.RP-1303.bam 60461090883 BAM aligned CPTAC3 38f7bc3a-6c57-4bc8-80dd-44b49b2343ff 6b6ef69bcdd9feda465382c55f1406b9 {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02349.WGS.N.hg38 C3L-02349 LSCC WGS blood_normal CPT0115160002 3ba3953b-5543-477c-9bb0-4433cd773a8f_wgs_gdc_realn.bam 87153972921 BAM harmonized CPTAC3 1261730f-702c-4781-9d77-bd1c59244821 ced3f8f4480aad89e61927f6b2fcf632 {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02349.WGS.T C3L-02349 LSCC WGS tumor CPT0112540009 CPT0112540009.WholeGenome.RP-1303.bam 53687944781 BAM aligned CPTAC3 8e21f6af-c0dc-404e-9449-8d83afce5286 8bd050ec632db5ae5d689c1d2e16ccc9 {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor"} -C3L-02349.WGS.T.hg38 C3L-02349 LSCC WGS tumor CPT0112540009 d26de4cd-762b-4e7e-bb50-e98df6cf7077_wgs_gdc_realn.bam 76436186000 BAM harmonized CPTAC3 8c0d0935-44e8-46fb-b258-eb45b6ac0447 db45f1e7bb5df11033dc6f3482be768f {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor"} -C3L-02349.WXS.A C3L-02349 LSCC WXS tissue_normal CPT0112550006 CPT0112550006.WholeExome.RP-1303.bam 25154116928 BAM aligned CPTAC3 efac05ea-ac64-44b4-aefd-50fdfd9aa6c8 ab88e2b126e5d875bceb4641373828fc {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.WXS.A.hg38 C3L-02349 LSCC WXS tissue_normal CPT0112550006 27e94b6f-a024-4066-9511-05989a7c9124_wxs_gdc_realn.bam 34301694925 BAM harmonized CPTAC3 d4f1528b-c5ab-44ea-b09c-fa2e3a4eeac6 6e5fb2ee540db93ad124334fef9699c1 {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02349.WXS.N C3L-02349 LSCC WXS blood_normal CPT0115160002 CPT0115160002.WholeExome.RP-1303.bam 30105853777 BAM aligned CPTAC3 e35189ff-f4b4-497c-ae74-da5b2f60f45e 296d15b1e6a59c8161d032a42ed2a1b5 {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02349.WXS.N.hg38 C3L-02349 LSCC WXS blood_normal CPT0115160002 3ba3953b-5543-477c-9bb0-4433cd773a8f_wxs_gdc_realn.bam 41412423446 BAM harmonized CPTAC3 c624be4d-286d-4776-b77e-d249fbe7b17e fc469157dbd4b91399720c79b21b01aa {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02349.WXS.T C3L-02349 LSCC WXS tumor CPT0112540009 CPT0112540009.WholeExome.RP-1303.bam 26385989176 BAM aligned CPTAC3 ace7f7be-277a-4bca-a2cd-8d57c88d5736 6c4f0cc42a3cc6b802c235991baece7c {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor"} -C3L-02349.WXS.T.hg38 C3L-02349 LSCC WXS tumor CPT0112540009 d26de4cd-762b-4e7e-bb50-e98df6cf7077_wxs_gdc_realn.bam 35937703549 BAM harmonized CPTAC3 1d1d3870-7d61-4f63-8cdb-2c0a07ef22b7 47618b2344c42cefcea859db0f414ff2 {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor"} -C3L-02350.MethArray.Green.A C3L-02350 LUAD Methylation_Array tissue_normal CPT0104760009 203027390040_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 6011a167-c791-4b4c-a53c-04b33c22102f f490382693e71d007b98dafd2a2cacbe {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.MethArray.Green.T C3L-02350 LUAD Methylation_Array tumor CPT0104750009 202234380024_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 14240e1b-c5cd-4904-bec0-b5e6040dee60 9f6035503911d31287cba2476f80aeaa {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor"} -C3L-02350.MethArray.Red.A C3L-02350 LUAD Methylation_Array tissue_normal CPT0104760009 203027390040_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 99106f41-5edd-48b3-8f7b-66e47f8a5e48 f4d5139d5943caa017316f1c9be876f9 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.MethArray.Red.T C3L-02350 LUAD Methylation_Array tumor CPT0104750009 202234380024_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 145cd04d-aacb-4a37-b0fe-35e1724cf44f 3f6ced7128b91b7956ce0ecfe98efd63 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor"} -C3L-02350.miRNA-Seq.A.hg38 C3L-02350 LUAD miRNA-Seq tissue_normal CPT0104760006 8a8b8bcb-d41a-43d9-bd5f-a5ff4520eb64_mirnaseq_gdc_realn.bam 264717063 BAM harmonized CPTAC3 9d9701e6-2983-472a-ae28-4f997dfd3b1a 2a28781224965c5cfbe790b90d70f1f8 {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.miRNA-Seq.S13_L007_R1.A C3L-02350 LUAD miRNA-Seq tissue_normal CPT0104760006 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L007_R1_001.unaln.bam 237909545 BAM S13_L007_R1 unaligned CPTAC3 39e39838-395d-4454-8721-c5caf1f9bfe7 6df7aaf296ac6b4690eb2733184dbb3b {"aliquot_tag": "ALQ_80d50fb0", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.miRNA-Seq.S41_L007_R1.T C3L-02350 LUAD miRNA-Seq tumor CPT0104750006 181108_UNC31-K00269_0163_BH23TVBBXY_GACGAC_S41_L007_R1_001.unaln.bam 235654598 BAM S41_L007_R1 unaligned CPTAC3 66a007ac-96dc-42d1-951c-5ad8bafa7a09 bf1ec3ac08488350a219f38a32c23416 {"aliquot_tag": "ALQ_c7757560", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02350.miRNA-Seq.T.hg38 C3L-02350 LUAD miRNA-Seq tumor CPT0104750006 e0a28eeb-9753-47d0-ad0b-2c086930e63f_mirnaseq_gdc_realn.bam 258576661 BAM harmonized CPTAC3 42b5095e-20fc-4044-abba-00da541d1abe a91346ed775c2db3ca91cf2419a404f3 {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor"} -C3L-02350.RNA-Seq.chimeric.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.chimeric.gdc_realn.bam 75228752 BAM chimeric harmonized CPTAC3 d7964fb7-36ac-4a78-b291-410a120c34aa bd6750052ef6f1c88a834544f932e321 {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.RNA-Seq.chimeric.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.chimeric.gdc_realn.bam 35180451 BAM chimeric harmonized CPTAC3 41da6992-f00f-4f4b-95cb-cec8a36fca98 50578865f9086a389d55696110a014ad {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor"} -C3L-02350.RNA-Seq.genomic.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.genomic.gdc_realn.bam 8405764202 BAM genomic harmonized CPTAC3 f6cde4c4-3e31-4128-83e4-bee6b3152f06 14ec77dfc83bb996b2679f6adec2c4e2 {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.RNA-Seq.genomic.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.genomic.gdc_realn.bam 9805706221 BAM genomic harmonized CPTAC3 e78d6f47-63eb-44c1-9d32-2d776d36d300 c1b2bd9ed169ba008d38725f222e600b {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor"} -C3L-02350.RNA-Seq.S16_L004_R1.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3967363449 FASTQ S16_L004_R1 unaligned CPTAC3 33fc37f3-73e1-4159-8e52-3be53dd9e2c3 f9972bd96ce5c1e88e296ea34ca13d0a {"aliquot_tag": "ALQ_80d50fb0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.RNA-Seq.S16_L004_R2.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 4451962157 FASTQ S16_L004_R2 unaligned CPTAC3 a09255be-5c21-4ef8-a02d-f2639f19ed6e a264e72ada4a81a218b29c90701f60d4 {"aliquot_tag": "ALQ_80d50fb0", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.RNA-Seq.S21_L006_R1.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R1_001.fastq.gz 4372927334 FASTQ S21_L006_R1 unaligned CPTAC3 82879494-5e4b-463c-bd21-c7f0f17a0f48 5d5d5132d0d201ca4108b46aa1a292e1 {"aliquot_tag": "ALQ_c7757560", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02350.RNA-Seq.S21_L006_R2.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4896138767 FASTQ S21_L006_R2 unaligned CPTAC3 5e35f2ef-3412-40aa-8261-3698acc0db0a 721dcae52e0a2ae635184e3b1d3df239 {"aliquot_tag": "ALQ_c7757560", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02350.RNA-Seq.transcriptome.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.transcriptome.gdc_realn.bam 9982352731 BAM transcriptome harmonized CPTAC3 34bf31eb-180f-4553-be7a-c387ac35e35b 9652dd74df20db18acb8769ff2eba19c {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.RNA-Seq.transcriptome.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.transcriptome.gdc_realn.bam 13125116655 BAM transcriptome harmonized CPTAC3 f478cea5-99ba-4f07-b283-ae6751472002 71672b9b6018a8f77d9e21453336ea05 {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor"} -C3L-02350.WGS.A C3L-02350 LUAD WGS tissue_normal CPT0104760009 CPT0104760009.WholeGenome.RP-1303.bam 53054949512 BAM aligned CPTAC3 39ab75a5-82fc-4cd0-b79f-d8e59763651e f2672ee8f0f443bd785db244866776b3 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.WGS.A.hg38 C3L-02350 LUAD WGS tissue_normal CPT0104760009 e7f74934-b812-43c5-94f5-2c87f74b7f6f_wgs_gdc_realn.bam 77014202932 BAM harmonized CPTAC3 0202116f-d3a0-432e-88ec-46291fa4338b 74ed621144a0e1f48e48233d16efd678 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.WGS.N C3L-02350 LUAD WGS blood_normal CPT0105180002 CPT0105180002.WholeGenome.RP-1303.bam 63842989115 BAM aligned CPTAC3 2abaa826-6129-41e1-8de0-4376bfdd3d40 0c6cd9b1b92ed0c4682b1fc0cce49844 {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal"} -C3L-02350.WGS.N.hg38 C3L-02350 LUAD WGS blood_normal CPT0105180002 2c8cbf2e-1ac6-46cb-9315-3690d564180f_wgs_gdc_realn.bam 93696489662 BAM harmonized CPTAC3 4dacf396-02e5-436c-ab15-6d0909282714 9151e1ebfcc3b93ecb1fbf2725b09f92 {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal"} -C3L-02350.WGS.T C3L-02350 LUAD WGS tumor CPT0104750009 CPT0104750009.WholeGenome.RP-1303.bam 56966838098 BAM aligned CPTAC3 21bcb559-3785-4d52-9870-85e2dfd9b22d 6f75bc2ec6c8a0bd4c156df937415b47 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor"} -C3L-02350.WGS.T.hg38 C3L-02350 LUAD WGS tumor CPT0104750009 c3ec294d-2862-4510-ba10-a7ea7d3ca87b_wgs_gdc_realn.bam 84062134673 BAM harmonized CPTAC3 e66b912b-c2b5-431d-b928-68db0c4b1a57 45c9ac387bacb94308860dae93f9616c {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor"} -C3L-02350.WXS.A C3L-02350 LUAD WXS tissue_normal CPT0104760009 CPT0104760009.WholeExome.RP-1303.bam 29479321333 BAM aligned CPTAC3 7b1039e0-0ff6-4e88-a0ae-fe347629c7f8 4795ee09791457257135aa6e2b3a8f24 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.WXS.A.hg38 C3L-02350 LUAD WXS tissue_normal CPT0104760009 e7f74934-b812-43c5-94f5-2c87f74b7f6f_wxs_gdc_realn.bam 40248991114 BAM harmonized CPTAC3 a45ec5c6-480d-448f-8bda-f36fdacbea72 af4747f1b07564f555541cf016c9f37b {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02350.WXS.N C3L-02350 LUAD WXS blood_normal CPT0105180002 CPT0105180002.WholeExome.RP-1303.bam 34059500348 BAM aligned CPTAC3 7a18843e-d157-469e-bdbf-8ae2b0adfcc8 bc94c17a657765688a399d56545ff941 {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal"} -C3L-02350.WXS.N.hg38 C3L-02350 LUAD WXS blood_normal CPT0105180002 2c8cbf2e-1ac6-46cb-9315-3690d564180f_wxs_gdc_realn.bam 45189829485 BAM harmonized CPTAC3 d475354c-cd2f-4da7-9dac-78491c5924f9 8f259ef14deefd54632f86ed1be9983f {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal"} -C3L-02350.WXS.T C3L-02350 LUAD WXS tumor CPT0104750009 CPT0104750009.WholeExome.RP-1303.bam 33782147829 BAM aligned CPTAC3 9c87faa0-f200-45d5-a11e-15798ca158e3 eff1920a672c30183a45306670bfddc1 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor"} -C3L-02350.WXS.T.hg38 C3L-02350 LUAD WXS tumor CPT0104750009 c3ec294d-2862-4510-ba10-a7ea7d3ca87b_wxs_gdc_realn.bam 45512655229 BAM harmonized CPTAC3 bdc4a149-c480-4dbe-8b32-66a0856c4e7d b081c1f19b71faea8e91281bccad70b2 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor"} -C3L-02352.MethArray.Green.A C3L-02352 CCRCC Methylation_Array tissue_normal CPT0104450006 204373100109_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 3ebeec4d-7f42-4263-a580-c6b38a58f3fb ccff13b326a6fef43a48039fa4146493 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.MethArray.Green.T C3L-02352 CCRCC Methylation_Array tumor CPT0104430009 202234370095_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 aa3dd4ac-6ccb-487e-954c-2b52d18fdae8 c5c5ac6480621ccf9f4df8ab7663256e {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor"} -C3L-02352.MethArray.Red.A C3L-02352 CCRCC Methylation_Array tissue_normal CPT0104450006 204373100109_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 0313fa7e-ede7-4bcc-a12c-a39a1a66f444 036ba6da5ad0002051887e25f70c9559 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.MethArray.Red.T C3L-02352 CCRCC Methylation_Array tumor CPT0104430009 202234370095_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 952637b3-bec6-4a17-a079-2a27a9987237 f509c82d615468b54cbde4f9dc0ecc76 {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor"} -C3L-02352.miRNA-Seq.A.hg38 C3L-02352 CCRCC miRNA-Seq tissue_normal CPT0104450009 95fc043d-e745-4ce8-925a-b788ae80da54_mirnaseq_gdc_realn.bam 245620658 BAM harmonized CPTAC3 f4bb8e02-c3ed-4af9-bca7-fc493ae25119 4c5d0f2f728c13eca2fa1dec79b6a925 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.miRNA-Seq.S20_L003_R1.T C3L-02352 CCRCC miRNA-Seq tumor CPT0104430006 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L003_R1_001.unaln.bam 239012552 BAM S20_L003_R1 unaligned CPTAC3 c3ad22c1-5dd7-49ea-a837-c065108ce288 029687344950aae898b8b682fca35a81 {"aliquot_tag": "ALQ_cea1f26e", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02352.miRNA-Seq.S38_L002_R1.A C3L-02352 CCRCC miRNA-Seq tissue_normal CPT0104450009 181119_UNC31-K00269_0165_AH27WCBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 221166447 BAM S38_L002_R1 unaligned CPTAC3 cd66ccdf-0aa1-4ea8-93f7-61f9acfb7838 c53768d0e2344b86be2716d268138739 {"aliquot_tag": "ALQ_d15e1a5f", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.miRNA-Seq.T.hg38 C3L-02352 CCRCC miRNA-Seq tumor CPT0104430006 b6d1e37b-80aa-471c-88f3-5f6a6adbd68a_mirnaseq_gdc_realn.bam 269762296 BAM harmonized CPTAC3 3cec1c8c-07d2-484c-84ac-05cd3545f332 740294010e1bfa1b463b25714fef6d39 {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor"} -C3L-02352.RNA-Seq.chimeric.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.chimeric.gdc_realn.bam 25334653 BAM chimeric harmonized CPTAC3 14141950-d5c5-41dc-945f-ae6ad56d1406 5c555893bdca9cc4dc156de449292695 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.RNA-Seq.chimeric.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.chimeric.gdc_realn.bam 44334225 BAM chimeric harmonized CPTAC3 dd06f542-88ad-496f-b979-c4a49fb5f0e0 3fea574b3b6e4475be1c23752c5090b2 {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor"} -C3L-02352.RNA-Seq.genomic.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.genomic.gdc_realn.bam 8720770380 BAM genomic harmonized CPTAC3 9dda95e4-d0e4-4f4d-851d-abc459d8f8bc 0b6f341e9aa958e72282c5825b24fc78 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.RNA-Seq.genomic.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.genomic.gdc_realn.bam 9879912473 BAM genomic harmonized CPTAC3 b14c3e46-f00f-416a-ad95-80ece7feafed 3734da3656765182c96a3623edd2b136 {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor"} -C3L-02352.RNA-Seq.S2_L007_R1.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4624350711 FASTQ S2_L007_R1 unaligned CPTAC3 fd5263b8-c893-46c7-bb26-f9631fdfa767 d628a1b892067e936ad9ff830076fc68 {"aliquot_tag": "ALQ_cea1f26e", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02352.RNA-Seq.S2_L007_R2.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R2_001.fastq.gz 5097195016 FASTQ S2_L007_R2 unaligned CPTAC3 c6b90cf8-197a-4924-870a-10c06fb61a4c fb79bd8d00e8e14fcc7a5315967f20ab {"aliquot_tag": "ALQ_cea1f26e", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02352.RNA-Seq.S6_L008_R1.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 3911764964 FASTQ S6_L008_R1 unaligned CPTAC3 568682f4-733c-4baa-956d-42b89f875b39 5c40721d3e63e97fddf8837fa02d816b {"aliquot_tag": "ALQ_d15e1a5f", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.RNA-Seq.S6_L008_R2.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4206651727 FASTQ S6_L008_R2 unaligned CPTAC3 7f2fbd91-4b5b-4f73-9959-c30c95b24651 947f26920a34b423e6c33b6e5bde8ec4 {"aliquot_tag": "ALQ_d15e1a5f", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.RNA-Seq.transcriptome.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.transcriptome.gdc_realn.bam 11178189579 BAM transcriptome harmonized CPTAC3 e4b00867-3ca0-4e30-84e7-ceb3d41c0d10 ad8e836e7dc2171fcd43dfead04df586 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.RNA-Seq.transcriptome.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.transcriptome.gdc_realn.bam 12725811872 BAM transcriptome harmonized CPTAC3 0e898059-418f-4c86-9ef2-763612a29b29 b6e7d7276139fa315275f351d98f537f {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor"} -C3L-02352.WGS.A C3L-02352 CCRCC WGS tissue_normal CPT0104450006 CPT0104450006.WholeGenome.RP-1303.bam 55008001766 BAM aligned CPTAC3 b9201e6b-950c-4423-9d4f-bad36c48394b 37488ee750a8b79af4a00cc979a1f8e7 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.WGS.A.hg38 C3L-02352 CCRCC WGS tissue_normal CPT0104450006 50d2ab08-0ec8-4774-9abb-b4c4964fdefb_wgs_gdc_realn.bam 81129354528 BAM harmonized CPTAC3 ec886303-63b6-49b2-99d1-d651eb696439 dff02ab66a5e32729dc6b5611d32f3c5 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.WGS.N C3L-02352 CCRCC WGS blood_normal CPT0105130002 CPT0105130002.WholeGenome.RP-1303.bam 65072264653 BAM aligned CPTAC3 3a119064-3def-4c81-9a53-7ae2fb8e3aad 953835fae5220d29ed3f9e34a0bcd507 {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal"} -C3L-02352.WGS.N.hg38 C3L-02352 CCRCC WGS blood_normal CPT0105130002 f429c925-dfb7-4760-873a-1d0867a8bd6f_wgs_gdc_realn.bam 95264081073 BAM harmonized CPTAC3 06b372b5-e9b9-4939-a23c-1ce83e676a17 149f237c4588bdc516ff5996d57e6004 {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal"} -C3L-02352.WGS.T C3L-02352 CCRCC WGS tumor CPT0104430009 CPT0104430009.WholeGenome.RP-1303.bam 59291053649 BAM aligned CPTAC3 c5a78924-4dbf-4900-808e-69f138924259 5b5e50225d0b9ababc99956a9f4ed477 {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor"} -C3L-02352.WGS.T.hg38 C3L-02352 CCRCC WGS tumor CPT0104430009 d9b82491-cfe6-4e42-ad35-a96eaca300a4_wgs_gdc_realn.bam 92926793345 BAM harmonized CPTAC3 445dae7d-7407-43bb-973f-6caf8a3755da 426fe4a2df7ba82e9113f5fddb514937 {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor"} -C3L-02352.WXS.A C3L-02352 CCRCC WXS tissue_normal CPT0104450006 CPT0104450006.WholeExome.RP-1303.bam 29154106159 BAM aligned CPTAC3 2a3ff38f-6629-4da9-8c6b-c040370432cb da8ca55461511db23fee18df744a7496 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.WXS.A.hg38 C3L-02352 CCRCC WXS tissue_normal CPT0104450006 50d2ab08-0ec8-4774-9abb-b4c4964fdefb_wxs_gdc_realn.bam 39139123223 BAM harmonized CPTAC3 ccec6fac-836f-42d2-81f9-74ccae84515b e4565f43d44d75cd0039e7aec979621b {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02352.WXS.N C3L-02352 CCRCC WXS blood_normal CPT0105130002 CPT0105130002.WholeExome.RP-1303.bam 31382159207 BAM aligned CPTAC3 bea06abe-ff09-490d-8c87-dadf4f6a6b8d 2387df30d890915b442827560848b2e8 {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal"} -C3L-02352.WXS.N.hg38 C3L-02352 CCRCC WXS blood_normal CPT0105130002 f429c925-dfb7-4760-873a-1d0867a8bd6f_wxs_gdc_realn.bam 42832496505 BAM harmonized CPTAC3 88f63943-6eb2-4840-bf68-31c1d7aa419f 2721ba44f6cc6ba0ef0feb31d9b2913e {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal"} -C3L-02352.WXS.T C3L-02352 CCRCC WXS tumor CPT0104430009 CPT0104430009.WholeExome.RP-1303.bam 30644125657 BAM aligned CPTAC3 aec40feb-c216-44ab-9985-26feaadd3eaa a932b1eeff5fa92258093337b3a9833a {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor"} -C3L-02352.WXS.T.hg38 C3L-02352 CCRCC WXS tumor CPT0104430009 d9b82491-cfe6-4e42-ad35-a96eaca300a4_wxs_gdc_realn.bam 42240181352 BAM harmonized CPTAC3 15abc31a-8678-464c-98dc-beb2d4272928 ea7d70e3da3be036d53811d9b2c8dcef {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor"} -C3L-02353.MethArray.Green.T C3L-02353 UCEC Methylation_Array tumor CPT0112780009 203219650218_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 636a7ec4-aa37-418a-84f7-baac6ea90adf 70bd6278f042a5d838da16f5ad0ba80f {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor"} -C3L-02353.MethArray.Red.T C3L-02353 UCEC Methylation_Array tumor CPT0112780009 203219650218_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 20a97099-26da-4ccc-97f1-81fbaf6e7d8d c8a199e1bbd25e93adfa1289b694f6ef {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor"} -C3L-02353.miRNA-Seq.A.hg38 C3L-02353 UCEC miRNA-Seq tissue_normal CPT0112790006 a81c2a9d-7d8d-47bd-a113-3e5adfd624be_mirnaseq_gdc_realn.bam 367693085 BAM harmonized CPTAC3 6668e34e-b55d-4ab1-b573-4d6a38f6ca84 ff3dba4307dac71530d025438e02622c {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.miRNA-Seq.S17_L002_R1.A C3L-02353 UCEC miRNA-Seq tissue_normal CPT0112790006 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L002_R1_001.unaln.bam 329904284 BAM S17_L002_R1 unaligned CPTAC3 61b6f99e-5cb2-4a62-9b4b-76f0e1a4cc80 c5a943fbed3615666f60d9ecaff19dde {"aliquot_tag": "ALQ_adffadc5", "sample": "S17", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.miRNA-Seq.S26_L003_R1.T C3L-02353 UCEC miRNA-Seq tumor CPT0112780006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGAGC_S26_L003_R1_001.unaln.bam 205743821 BAM S26_L003_R1 unaligned CPTAC3 e1ded5b3-ee90-43e7-b108-2122fbbfbccc f7bdeecc926cfcc90b82616bcb6614ff {"aliquot_tag": "ALQ_909f8475", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02353.miRNA-Seq.T.hg38 C3L-02353 UCEC miRNA-Seq tumor CPT0112780006 e5bdfbae-b819-4cb0-b5ed-c2367eeff418_mirnaseq_gdc_realn.bam 224245670 BAM harmonized CPTAC3 ab4caeb7-ddbd-468b-a8d6-058c71120a4b 86895d9feccc35e40dea0c6898381041 {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor"} -C3L-02353.RNA-Seq.chimeric.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.chimeric.gdc_realn.bam 83066915 BAM chimeric harmonized CPTAC3 898f7587-f217-4fc0-9319-06e500ae24d7 ec79997790c215be0e63ef6c5f82a650 {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.RNA-Seq.chimeric.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.chimeric.gdc_realn.bam 36618092 BAM chimeric harmonized CPTAC3 9de8ff03-b55e-4fa2-9f54-da6f6a8cc408 e8a483b3ce75d91613c72262e2a4b67e {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor"} -C3L-02353.RNA-Seq.genomic.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.genomic.gdc_realn.bam 9811936457 BAM genomic harmonized CPTAC3 1ada8191-c981-4397-ba94-993e2ab3ada4 21f657a889f0aa630fe25505a3c116db {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.RNA-Seq.genomic.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.genomic.gdc_realn.bam 9987189514 BAM genomic harmonized CPTAC3 b9898452-9a8d-4515-8cb4-d4db83ff07eb 4809f69622d59abdab965a276365a714 {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor"} -C3L-02353.RNA-Seq.S14_L004_R1.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4648983028 FASTQ S14_L004_R1 unaligned CPTAC3 fc5ae671-1623-40e6-91fa-46462bfd5231 d79b1f78dde1c0d1116d77b3ae79d208 {"aliquot_tag": "ALQ_909f8475", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02353.RNA-Seq.S14_L004_R2.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R2_001.fastq.gz 5062165421 FASTQ S14_L004_R2 unaligned CPTAC3 5c918460-2c92-4a1c-9a8f-a7f16bb06db3 5c53901cbddc6eb1f092a273388252ff {"aliquot_tag": "ALQ_909f8475", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02353.RNA-Seq.S16_L006_R1.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R1_001.fastq.gz 4058155304 FASTQ S16_L006_R1 unaligned CPTAC3 276387f5-9cac-46d2-83b6-16832362c175 532999a1e55da30c892de7b9b034189f {"aliquot_tag": "ALQ_adffadc5", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.RNA-Seq.S16_L006_R2.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R2_001.fastq.gz 4203543250 FASTQ S16_L006_R2 unaligned CPTAC3 4e769a79-a59a-4fda-9c5b-a4515601051b 908d7e574f7e3413c4062408ab3bc880 {"aliquot_tag": "ALQ_adffadc5", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.RNA-Seq.transcriptome.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.transcriptome.gdc_realn.bam 9126514596 BAM transcriptome harmonized CPTAC3 6f892b7c-b044-46d6-988f-5019d66d8734 3cba538c39c82280ad598209e4291394 {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.RNA-Seq.transcriptome.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.transcriptome.gdc_realn.bam 12559408944 BAM transcriptome harmonized CPTAC3 ee48e8fa-7243-416c-8022-86926bbe84f4 249613e74a877875c3c22cdb77d98440 {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor"} -C3L-02353.WGS.A C3L-02353 UCEC WGS tissue_normal CPT0112790009 CPT0112790009.WholeGenome.RP-1303.bam 60851765369 BAM aligned CPTAC3 2bbb0bb3-1b0f-4df6-a4ba-18555d280e82 16b5c806bd15efd86d587054f8e0f4ef {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.WGS.A.hg38 C3L-02353 UCEC WGS tissue_normal CPT0112790009 1d4863eb-7d77-4bbf-b072-15da9c2e0e2e_wgs_gdc_realn.bam 88376492161 BAM harmonized CPTAC3 de62c22e-0340-47cb-82f5-d914218d5f3a 4215a7e7eea29769bda60c50812afee6 {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.WGS.N C3L-02353 UCEC WGS blood_normal CPT0115200002 CPT0115200002.WholeGenome.RP-1303.bam 54855374304 BAM aligned CPTAC3 d4dc6dc0-e8f2-4058-9fa2-20bf8f2938a5 f7a1c70336d66e95924c522b67ace19d {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal"} -C3L-02353.WGS.N.hg38 C3L-02353 UCEC WGS blood_normal CPT0115200002 a1da5a03-5869-4637-8e25-fcfde6b1c44d_wgs_gdc_realn.bam 79464314258 BAM harmonized CPTAC3 9bd72b0d-cbcf-44c5-9754-347b65ff1a08 4eab04c7acf93da434b2f51311968b63 {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal"} -C3L-02353.WGS.T C3L-02353 UCEC WGS tumor CPT0112780009 CPT0112780009.WholeGenome.RP-1303.bam 55338911663 BAM aligned CPTAC3 0d160263-b3eb-400a-8973-9d1f96b31326 9a4571594cde20a387510c7d10ac55d4 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor"} -C3L-02353.WGS.T.hg38 C3L-02353 UCEC WGS tumor CPT0112780009 eaba55bc-5a4e-46dd-a05d-0fbf99748efc_wgs_gdc_realn.bam 79958282142 BAM harmonized CPTAC3 18199824-5792-44a1-990d-96ee74bce3df bc53fb3df91289caa5509cd7659d3b95 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor"} -C3L-02353.WXS.A C3L-02353 UCEC WXS tissue_normal CPT0112790009 CPT0112790009.WholeExome.RP-1303.bam 20112321662 BAM aligned CPTAC3 dd74ac87-a913-4048-82f7-8d1ca2cc9e2b e524397847da187abe170f5bd2e54219 {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.WXS.A.hg38 C3L-02353 UCEC WXS tissue_normal CPT0112790009 1d4863eb-7d77-4bbf-b072-15da9c2e0e2e_wxs_gdc_realn.bam 27922573828 BAM harmonized CPTAC3 4c912199-07a5-4741-b689-13516ba26b44 60f54fd097e2ebae8c44c28a95ea6926 {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02353.WXS.N C3L-02353 UCEC WXS blood_normal CPT0115200002 CPT0115200002.WholeExome.RP-1303.bam 20086013222 BAM aligned CPTAC3 42477ce4-4e29-4fd2-a4d1-9724321a6098 f73446f4c20a98ac292738b10377f785 {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal"} -C3L-02353.WXS.N.hg38 C3L-02353 UCEC WXS blood_normal CPT0115200002 a1da5a03-5869-4637-8e25-fcfde6b1c44d_wxs_gdc_realn.bam 27935863339 BAM harmonized CPTAC3 81ab9aae-5ff1-4d04-b10b-663be77819f8 26786acd053011a649aaf3ba5d912d94 {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal"} -C3L-02353.WXS.T C3L-02353 UCEC WXS tumor CPT0112780009 CPT0112780009.WholeExome.RP-1303.bam 21697249171 BAM aligned CPTAC3 15db6949-cc25-49dd-851c-a7c6612f056f 97aded6edfcc25402f8005ad010bbd22 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor"} -C3L-02353.WXS.T.hg38 C3L-02353 UCEC WXS tumor CPT0112780009 eaba55bc-5a4e-46dd-a05d-0fbf99748efc_wxs_gdc_realn.bam 29662414249 BAM harmonized CPTAC3 dcf067cc-e6b4-4c03-b331-8ee60fa42954 b4e843f3b3d33b8d9aedd1457c054930 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor"} -C3L-02354.MethArray.Green.T C3L-02354 UCEC Methylation_Array tumor CPT0112910009 203027390028_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7dfe5ecc-1fb2-41fc-866b-6bb7cc59b8f5 b498fceb44f1e659a799b8ba6d93df1f {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor"} -C3L-02354.MethArray.Red.T C3L-02354 UCEC Methylation_Array tumor CPT0112910009 203027390028_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 6e268ae0-3d8c-4326-9358-333cbabc76a2 e96aa3e7a96034665c75b56780a4777e {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor"} -C3L-02354.miRNA-Seq.S38_L004_R1.T C3L-02354 UCEC miRNA-Seq tumor CPT0112910006 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L004_R1_001.unaln.bam 214749363 BAM S38_L004_R1 unaligned CPTAC3 d81426bb-55c0-4265-a4d9-c540351e7ecc ff2e0f97ee732d754bbdf9092b5630d0 {"aliquot_tag": "ALQ_a7858774", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02354.miRNA-Seq.T.hg38 C3L-02354 UCEC miRNA-Seq tumor CPT0112910006 4d0b18b4-fb4c-4089-a2dc-31bff22f14f3_mirnaseq_gdc_realn.bam 237309969 BAM harmonized CPTAC3 727e48a0-ab62-4d33-8e24-c43d6dee69cd 906ea125113d9d1f3d62f18055c078bf {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.chimeric.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.chimeric.gdc_realn.bam 44556437 BAM chimeric harmonized CPTAC3 ba2c9dde-5d52-455e-bf18-c5786b035c7b b076892c844a4ca411db259a33c3509a {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.chimeric.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.chimeric.gdc_realn.bam 250696193 BAM chimeric harmonized CPTAC3 ff83bce6-9177-4a4b-98ba-23d75e9c7626 fc7acba2d5f4f8fc990ed288ada8dc11 {"aliquot_tag": "ALQ_9251f48f", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.genomic.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.genomic.gdc_realn.bam 8103799485 BAM genomic harmonized CPTAC3 b5507e4a-ffbe-426c-9372-70082daba314 38ddf643a2ad22bd29af18ef6122b775 {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.genomic.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.genomic.gdc_realn.bam 12372037636 BAM genomic harmonized CPTAC3 a7b06e4e-83b9-4e9c-b7bc-0a6aecf969fa 225befc43384c24fd7c20c07d0ef9edc {"aliquot_tag": "ALQ_9251f48f", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.S18_L005_R1.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 4074053965 FASTQ S18_L005_R1 unaligned CPTAC3 fb47a896-7af6-4e75-8fb6-81e608e926a0 20e0fa4830d52576fe800e66515dcaba {"aliquot_tag": "ALQ_a7858774", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.S18_L005_R2.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 4410879128 FASTQ S18_L005_R2 unaligned CPTAC3 e026f8ff-6f40-48fb-91e3-68f6d41f297d 4d513305b3eb4332d5aac83a17d6e0d8 {"aliquot_tag": "ALQ_a7858774", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.S45_R1.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R1_001.fastq.gz 7815601613 FASTQ S45_R1 unaligned CPTAC3 44b88a32-d1ab-4d7f-9c47-62072e19a656 ec694cafcf61b6a27c01c9320acfa44b {"aliquot_tag": "ALQ_9251f48f", "sample": "S45", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.S45_R2.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R2_001.fastq.gz 8237727846 FASTQ S45_R2 unaligned CPTAC3 30b7005d-fa87-4f87-a9e3-cfeee234f17a 496b2c8a4488fdb10afbb22a9bff9ba4 {"aliquot_tag": "ALQ_9251f48f", "sample": "S45", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.transcriptome.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.transcriptome.gdc_realn.bam 10437789646 BAM transcriptome harmonized CPTAC3 3e0c3f5c-be53-40c9-b2b7-af78d9135b4d c5c7dab1987bb2575e029324d8525c97 {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor"} -C3L-02354.RNA-Seq.transcriptome.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.transcriptome.gdc_realn.bam 6725121368 BAM transcriptome harmonized CPTAC3 70727568-bcd9-4735-a272-95fe158f7015 068d4ecb10d1a2f458c8f92d5aee4940 {"aliquot_tag": "ALQ_9251f48f", "gdc_sample_type": "Primary Tumor"} -C3L-02354.WGS.N C3L-02354 UCEC WGS blood_normal CPT0115210002 CPT0115210002.WholeGenome.RP-1303.bam 59514184589 BAM aligned CPTAC3 71c79ef7-a9b7-4207-9256-73fc0dd4057c 8aa4ccec42fe0771831084f528e4e7cb {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal"} -C3L-02354.WGS.N.hg38 C3L-02354 UCEC WGS blood_normal CPT0115210002 e719b2aa-01be-4930-94e1-0938b36ef53c_wgs_gdc_realn.bam 86806174458 BAM harmonized CPTAC3 879d8d6e-fc01-4c08-bc70-ca98ef1fa5d7 c7eb1f2f79a7f7b44aff3fa12fb23bb5 {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal"} -C3L-02354.WGS.T C3L-02354 UCEC WGS tumor CPT0112910009 CPT0112910009.WholeGenome.RP-1303.bam 66182749311 BAM aligned CPTAC3 62ea86c9-391d-4cfb-b251-6e707435a851 4b6a83cca39d1b421790b5e89f9bd5c5 {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor"} -C3L-02354.WGS.T.hg38 C3L-02354 UCEC WGS tumor CPT0112910009 41fa6fa9-57db-459a-b50a-6fb9d6ff8b77_wgs_gdc_realn.bam 97935154380 BAM harmonized CPTAC3 9dedae7f-92d8-459a-856e-2dbeac7f4ef6 4100148aee10e0363fc1673bf0112cbb {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor"} -C3L-02354.WXS.N C3L-02354 UCEC WXS blood_normal CPT0115210002 CPT0115210002.WholeExome.RP-1303.bam 41154449200 BAM aligned CPTAC3 d7fe90d9-72de-4a13-81fe-8445c102614c 4e2f5b5e62629be3cee556ee84d862d3 {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal"} -C3L-02354.WXS.N.hg38 C3L-02354 UCEC WXS blood_normal CPT0115210002 e719b2aa-01be-4930-94e1-0938b36ef53c_wxs_gdc_realn.bam 55356117739 BAM harmonized CPTAC3 08a84bd9-0c5d-4cf4-82ba-9d58d89dfaf8 0c4f93a5ef4d1aa6641bc6726f015c21 {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal"} -C3L-02354.WXS.T C3L-02354 UCEC WXS tumor CPT0112910009 CPT0112910009.WholeExome.RP-1303.bam 33451851051 BAM aligned CPTAC3 cf835804-bb72-4b71-ab35-be85f06da81a 5165d14acb013a93d9b636be3cc36f45 {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor"} -C3L-02354.WXS.T.hg38 C3L-02354 UCEC WXS tumor CPT0112910009 41fa6fa9-57db-459a-b50a-6fb9d6ff8b77_wxs_gdc_realn.bam 45361383285 BAM harmonized CPTAC3 be6cfd59-5662-40f8-a9d1-409d18549b4d adffb2f96945cf09d0cf619e80dda858 {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor"} -C3L-02357.MethArray.Green.T C3L-02357 UCEC Methylation_Array tumor CPT0113330009 203219650006_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 12068004-8814-4a66-b9a4-cfaad73806ae 49f771eb7f86fda44653abbd9842c576 {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor"} -C3L-02357.MethArray.Red.T C3L-02357 UCEC Methylation_Array tumor CPT0113330009 203219650006_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a5d9a3bb-77a6-4695-ae2e-910caa1dc687 6acd8f00717e2f798651355acbf599aa {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor"} -C3L-02357.miRNA-Seq.S30_L003_R1.T C3L-02357 UCEC miRNA-Seq tumor CPT0113330006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACCGG_S30_L003_R1_001.unaln.bam 169174821 BAM S30_L003_R1 unaligned CPTAC3 d93d65f2-3f80-47ae-9994-c29245c4c057 6f068cfcd4ce37fdb9ebeed0c37a8071 {"aliquot_tag": "ALQ_daa9fcc6", "sample": "S30", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02357.miRNA-Seq.T.hg38 C3L-02357 UCEC miRNA-Seq tumor CPT0113330006 70453f22-e042-4d16-a50a-7f613cec41ba_mirnaseq_gdc_realn.bam 180900967 BAM harmonized CPTAC3 f765361c-1733-4c52-b242-2fc9a0fc8096 371fd4a7ea16cd875716c162e3c26d2a {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.chimeric.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.chimeric.gdc_realn.bam 23456565 BAM chimeric harmonized CPTAC3 8ec463a6-4af6-4131-a045-208fa1da5b5f dfc53f2c8ea4798a8d23a31e81dbd532 {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.chimeric.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.chimeric.gdc_realn.bam 210533007 BAM chimeric harmonized CPTAC3 21b604a6-5276-46ea-9fc9-2f0d9a30ea2f 6375489c7a51e1488e98dbb2584a2ae7 {"aliquot_tag": "ALQ_5ab17bff", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.genomic.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.genomic.gdc_realn.bam 8007483794 BAM genomic harmonized CPTAC3 7fff9088-ab42-4cd4-926e-11e9232811db 52b7c87f0cbc7da3c2813292cdfce498 {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.genomic.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.genomic.gdc_realn.bam 9943880823 BAM genomic harmonized CPTAC3 cf5c8253-898a-4db8-8df1-bbea2276cb45 70751cc86847bc132602ac81c5c40c86 {"aliquot_tag": "ALQ_5ab17bff", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.S11_L003_R1.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 3325096909 FASTQ S11_L003_R1 unaligned CPTAC3 9de78dc5-bd69-4f6e-88ca-976587003124 725e19a2ccb7ee8cba21669cd7ec8acf {"aliquot_tag": "ALQ_daa9fcc6", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.S11_L003_R2.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 3636538136 FASTQ S11_L003_R2 unaligned CPTAC3 9ed83cfd-1128-4782-89bc-98cfa1a103b2 2d9b225178c17b788310c1466ed7e879 {"aliquot_tag": "ALQ_daa9fcc6", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.S31_R1.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R1_001.fastq.gz 5995121292 FASTQ S31_R1 unaligned CPTAC3 611d4cdd-9cf9-4cc6-8e65-f29191cf1070 49951835f6dda2cc78ea3e6f625e02b0 {"aliquot_tag": "ALQ_5ab17bff", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.S31_R2.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R2_001.fastq.gz 6202429288 FASTQ S31_R2 unaligned CPTAC3 6448cb04-d671-43b9-86c0-81b68b092a57 37aec7ca90ffc861293e932b93fccbbb {"aliquot_tag": "ALQ_5ab17bff", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.transcriptome.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.transcriptome.gdc_realn.bam 11112633416 BAM transcriptome harmonized CPTAC3 e3e6a107-fc6e-420e-9476-2267ec54ca80 9567e5776d3f77fef1866156ba9f6419 {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor"} -C3L-02357.RNA-Seq.transcriptome.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.transcriptome.gdc_realn.bam 4811628763 BAM transcriptome harmonized CPTAC3 4f9f153a-8693-4752-8be6-e3656e5d04af c68634653e77c7b33ce7f1b014ec8e96 {"aliquot_tag": "ALQ_5ab17bff", "gdc_sample_type": "Primary Tumor"} -C3L-02357.WGS.N C3L-02357 UCEC WGS blood_normal CPT0115280002 CPT0115280002.WholeGenome.RP-1303.bam 56154592805 BAM aligned CPTAC3 4b061097-3159-410c-9325-e497e24ba551 47a4c051c0c1ad5b3a94c0e5d28b7153 {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal"} -C3L-02357.WGS.N.hg38 C3L-02357 UCEC WGS blood_normal CPT0115280002 69e9418e-fb8c-45aa-ab06-5ac6825b63d2_wgs_gdc_realn.bam 81027382280 BAM harmonized CPTAC3 9115dbbe-ef7e-4c69-aa6d-dd8f24ae0ed8 2332cacdfb41ff446a06f63afee8ce1f {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal"} -C3L-02357.WGS.T C3L-02357 UCEC WGS tumor CPT0113330009 CPT0113330009.WholeGenome.RP-1303.bam 56565914203 BAM aligned CPTAC3 08a59d25-484e-4eab-885e-3fd71620bbd9 e0838438c2776aaa7bc596ec5cf1b8eb {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor"} -C3L-02357.WGS.T.hg38 C3L-02357 UCEC WGS tumor CPT0113330009 f43f1826-ba38-4389-ac95-dd6097317421_wgs_gdc_realn.bam 81947339856 BAM harmonized CPTAC3 ccb32710-0918-43b0-907c-106e53ff2f0d c988a28d4341c91a71081c53bed8b4e1 {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor"} -C3L-02357.WXS.N C3L-02357 UCEC WXS blood_normal CPT0115280002 CPT0115280002.WholeExome.RP-1303.bam 23074836832 BAM aligned CPTAC3 61b9929a-b72a-4191-be0d-4abfa36f8a58 984b28cea486d46b4dfe1f0f631d1351 {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal"} -C3L-02357.WXS.N.hg38 C3L-02357 UCEC WXS blood_normal CPT0115280002 69e9418e-fb8c-45aa-ab06-5ac6825b63d2_wxs_gdc_realn.bam 32230346086 BAM harmonized CPTAC3 dbfdf524-d634-4cf3-b8c0-c770b02b3b00 c3a5c9953128536a71218fafa7d38180 {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal"} -C3L-02357.WXS.T C3L-02357 UCEC WXS tumor CPT0113330009 CPT0113330009.WholeExome.RP-1303.bam 26423189374 BAM aligned CPTAC3 7fc49caf-84bb-4c6e-9768-271230229fb2 230c3472e45c2b743540da4c078b0b39 {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor"} -C3L-02357.WXS.T.hg38 C3L-02357 UCEC WXS tumor CPT0113330009 f43f1826-ba38-4389-ac95-dd6097317421_wxs_gdc_realn.bam 35880744595 BAM harmonized CPTAC3 11071103-8409-4215-bc03-770f16b958c6 c97b6271e0ebe44afcb9916592afea9e {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor"} -C3L-02358.MethArray.Green.A C3L-02358 LSCC Methylation_Array tissue_normal CPT0112730006 203219650005_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cb24ed95-c253-4206-b075-5490789a48c7 c397b301e87a5473dc032589be39c227 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.MethArray.Green.T C3L-02358 LSCC Methylation_Array tumor CPT0112720006 203219640157_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 31ef4dfa-c28c-41dd-8e89-294267689a7f 0921602b42d32c8ae3f9f133eb4c3641 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor"} -C3L-02358.MethArray.Red.A C3L-02358 LSCC Methylation_Array tissue_normal CPT0112730006 203219650005_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 fe089865-408f-43bb-95be-2883f3911a5c bd161f0865f29e2c185cc1a9f4a8e22e {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.MethArray.Red.T C3L-02358 LSCC Methylation_Array tumor CPT0112720006 203219640157_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 ed30634f-35eb-44a1-877e-867befbb5b22 28bd534f66a0ba4eacb92f3efde72284 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor"} -C3L-02358.miRNA-Seq.A.hg38 C3L-02358 LSCC miRNA-Seq tissue_normal CPT0112730009 fd109dc0-c9f8-4b5a-b407-058402036f38_mirnaseq_gdc_realn.bam 312113032 BAM harmonized CPTAC3 de6ca445-8ce3-4a03-9eed-22c55685a600 c6dcc10fa8d96c9f096a61f9eec29e78 {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.miRNA-Seq.S37_L002_R1.A C3L-02358 LSCC miRNA-Seq tissue_normal CPT0112730009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTAGCT_S37_L002_R1_001.unaln.bam 280456706 BAM S37_L002_R1 unaligned CPTAC3 145051dc-1b52-4fc5-9629-0b560bb96ff3 c0ffae98ba5a3a89be367b067d43377f {"aliquot_tag": "ALQ_77f0a8f5", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.miRNA-Seq.S7_L001_R1.T C3L-02358 LSCC miRNA-Seq tumor CPT0112720009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGATC_S7_L001_R1_001.unaln.bam 270114861 BAM S7_L001_R1 unaligned CPTAC3 73cb9001-5f01-4b2a-9705-f2766dfff138 b76be8f03452d9559297153a9c457652 {"aliquot_tag": "ALQ_4a908145", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02358.miRNA-Seq.T.hg38 C3L-02358 LSCC miRNA-Seq tumor CPT0112720009 eef7c418-ef4d-487a-9d2c-4ac0b7e9c357_mirnaseq_gdc_realn.bam 297063552 BAM harmonized CPTAC3 b951ff8c-218d-4821-8303-d5c88df2b0b3 960f757a9724e1a68c2b973bb36e03ca {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor"} -C3L-02358.RNA-Seq.chimeric.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.chimeric.gdc_realn.bam 30066335 BAM chimeric harmonized CPTAC3 c350d7e8-a202-442f-8db4-ee7e7ab86915 a9a356c9dbda1037ff70713512e3eaca {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.RNA-Seq.chimeric.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.chimeric.gdc_realn.bam 27268601 BAM chimeric harmonized CPTAC3 567ba9b3-4970-42e6-b2a5-1fbf429d1ab5 1fae13ea13166293ddbe8df62d06d206 {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor"} -C3L-02358.RNA-Seq.genomic.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.genomic.gdc_realn.bam 8192115138 BAM genomic harmonized CPTAC3 56712a0f-31c0-4651-96a5-809017a7d033 6ca1fa78d22be3ed715bb20f705af230 {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.RNA-Seq.genomic.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.genomic.gdc_realn.bam 7800820984 BAM genomic harmonized CPTAC3 64765784-71ac-4ea3-8095-014122fb1300 8b28392dd60c99629adb2c71eb366946 {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor"} -C3L-02358.RNA-Seq.S21_L006_R1.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R1_001.fastq.gz 3765277595 FASTQ S21_L006_R1 unaligned CPTAC3 ecbf1693-e7ea-4827-9399-62f8aa51580c 6c94218c1b0d59f8f2d793adf64ca988 {"aliquot_tag": "ALQ_4a908145", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02358.RNA-Seq.S21_L006_R2.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R2_001.fastq.gz 3970405337 FASTQ S21_L006_R2 unaligned CPTAC3 6a371efe-48bf-46c1-a0ec-1cbdf4ec213c 0c468c7fa7ea308b3db34501be28551c {"aliquot_tag": "ALQ_4a908145", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02358.RNA-Seq.S22_L006_R1.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R1_001.fastq.gz 3733619091 FASTQ S22_L006_R1 unaligned CPTAC3 236bb774-3d11-4c6e-9176-e1eb0156fcff 498de41960f28b8a2419ace708778fd3 {"aliquot_tag": "ALQ_77f0a8f5", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.RNA-Seq.S22_L006_R2.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3864569121 FASTQ S22_L006_R2 unaligned CPTAC3 115fe20f-5864-4c22-aea0-15508567ce43 5edecba1318b66101f47e089c53b2254 {"aliquot_tag": "ALQ_77f0a8f5", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.RNA-Seq.transcriptome.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.transcriptome.gdc_realn.bam 9392318007 BAM transcriptome harmonized CPTAC3 dc68af7d-8244-4eb7-95d7-97b710278ce6 80888d4acfc7c28d1bb72c9583e1bdb8 {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.RNA-Seq.transcriptome.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.transcriptome.gdc_realn.bam 10677133217 BAM transcriptome harmonized CPTAC3 a72521ec-f8be-4ba7-9cc7-b2cc361fc00a 365e2f2c1892d780dddb64315d092714 {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor"} -C3L-02358.WGS.A C3L-02358 LSCC WGS tissue_normal CPT0112730006 CPT0112730006.WholeGenome.RP-1303.bam 55630381245 BAM aligned CPTAC3 b3257c80-939e-401e-b391-a1ecd90ac8ba 5a8eba59ed2ec38768ffbfed66a836c7 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.WGS.A.hg38 C3L-02358 LSCC WGS tissue_normal CPT0112730006 dd68794f-b41b-46f5-baac-5876e3060f08_wgs_gdc_realn.bam 81486223975 BAM harmonized CPTAC3 644f9be9-44f3-42b1-8ebb-e5f8f6b43d2f 3d780b44022ef3c7e5eb3987d41361b6 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.WGS.N C3L-02358 LSCC WGS blood_normal CPT0115190002 CPT0115190002.WholeGenome.RP-1303.bam 59335862995 BAM aligned CPTAC3 61b7c1e7-8105-4398-876e-9a72b24e0ad0 bc7499cda4782cf78658bcb59fad32df {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02358.WGS.N.hg38 C3L-02358 LSCC WGS blood_normal CPT0115190002 2df2a777-76f3-43fd-8d48-ac283e79c4eb_wgs_gdc_realn.bam 85424473542 BAM harmonized CPTAC3 4c108047-55fd-4108-915e-3435a5fab0ce 37789587c07a798283fa00f445a50516 {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02358.WGS.T C3L-02358 LSCC WGS tumor CPT0112720006 CPT0112720006.WholeGenome.RP-1303.bam 56505081820 BAM aligned CPTAC3 b21fb503-fb2e-49df-aa4a-156209578493 b26020a933c53d9ce708c5468cbc7ff2 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor"} -C3L-02358.WGS.T.hg38 C3L-02358 LSCC WGS tumor CPT0112720006 61f5b700-0bb6-424d-aab5-ecf10d369c99_wgs_gdc_realn.bam 83009244570 BAM harmonized CPTAC3 6d651392-d678-43c2-9d62-4f8ebb90d33f c5edb0eae90d38df335749a5d51a4e24 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor"} -C3L-02358.WXS.A C3L-02358 LSCC WXS tissue_normal CPT0112730006 CPT0112730006.WholeExome.RP-1303.bam 43280775866 BAM aligned CPTAC3 64be547e-9c2e-46bf-b214-d58f4c699205 d9d1f103b6f91380fd6469cf84047710 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.WXS.A.hg38 C3L-02358 LSCC WXS tissue_normal CPT0112730006 dd68794f-b41b-46f5-baac-5876e3060f08_wxs_gdc_realn.bam 59387761626 BAM harmonized CPTAC3 c67747ab-b19d-4a1e-ae77-4f13e453abbd e74e78317d78dfbdfbfd0668165da522 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02358.WXS.N C3L-02358 LSCC WXS blood_normal CPT0115190002 CPT0115190002.WholeExome.RP-1303.bam 23475053704 BAM aligned CPTAC3 fe347554-ba2b-4d5c-bc9e-7ac5d63ba4bc 18ee5609062fca950eecdaadd5802b0a {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02358.WXS.N.hg38 C3L-02358 LSCC WXS blood_normal CPT0115190002 2df2a777-76f3-43fd-8d48-ac283e79c4eb_wxs_gdc_realn.bam 31835938786 BAM harmonized CPTAC3 55b76b44-854d-417f-a02f-eb7f21e51974 f108aefde9e9057cbf5459e777faeac3 {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02358.WXS.T C3L-02358 LSCC WXS tumor CPT0112720006 CPT0112720006.WholeExome.RP-1303.bam 26532449288 BAM aligned CPTAC3 9a011bf9-9c2a-4723-b86b-453ff5da37ce 341f1dc709dd7704839ca414017f6a13 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor"} -C3L-02358.WXS.T.hg38 C3L-02358 LSCC WXS tumor CPT0112720006 61f5b700-0bb6-424d-aab5-ecf10d369c99_wxs_gdc_realn.bam 36520078239 BAM harmonized CPTAC3 b19b1144-5656-4d2a-82e2-923e2f43bfef 80f0d972083fd875a2b08d9a6ca63bc2 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor"} -C3L-02364.MethArray.Green.A C3L-02364 CCRCC Methylation_Array tissue_normal CPT0113280006 204930640024_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e5b02ee1-ba75-427b-a1ec-e307174028e1 b77e1cb3313b3c7a859cada53552b653 {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.MethArray.Green.T C3L-02364 CCRCC Methylation_Array tumor CPT0113260009 203220070171_R03C01_Grn.idat 13676219 IDAT Green NA CPTAC3 6e409d9a-cb88-47fc-ad98-6273705a35af 6c18f432b9d96f4a1f54d50f496d46d7 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor"} -C3L-02364.MethArray.Red.A C3L-02364 CCRCC Methylation_Array tissue_normal CPT0113280006 204930640024_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 722e1f57-dd04-4a24-ac0a-6bc83a2924bc 6df72a3698cfb4f788a0e72ef1d43f17 {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.MethArray.Red.T C3L-02364 CCRCC Methylation_Array tumor CPT0113260009 203220070171_R03C01_Red.idat 13676219 IDAT Red NA CPTAC3 c6b5aa80-8b67-4751-beb0-8fbf0fc9bd99 95a23b3b2665285cccf444c1d13d3671 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor"} -C3L-02364.miRNA-Seq.A.hg38 C3L-02364 CCRCC miRNA-Seq tissue_normal CPT0113280009 d14c8b6e-c5d2-46a4-8f6f-3bb7ba7de995_mirnaseq_gdc_realn.bam 256037566 BAM harmonized CPTAC3 06fae9cc-7961-40e6-9752-54f94e12dc37 94cce491a9020f772571a403d4d4a1ad {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.miRNA-Seq.S29_L003_R1.T C3L-02364 CCRCC miRNA-Seq tumor CPT0113260006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAACTA_S29_L003_R1_001.unaln.bam 290712857 BAM S29_L003_R1 unaligned CPTAC3 a1a0086f-3471-4b08-89c9-673cc988e3bd c5177460feec689e1c0d724bc410fdbb {"aliquot_tag": "ALQ_d915a013", "sample": "S29", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02364.miRNA-Seq.S6_L002_R1.A C3L-02364 CCRCC miRNA-Seq tissue_normal CPT0113280009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L002_R1_001.unaln.bam 234029528 BAM S6_L002_R1 unaligned CPTAC3 032eeb6f-c700-4742-a774-3937acd58766 908a655d6fe7a1a1b9d896fbbc126f93 {"aliquot_tag": "ALQ_f69a03e3", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.miRNA-Seq.T.hg38 C3L-02364 CCRCC miRNA-Seq tumor CPT0113260006 279eb787-d0d8-4ece-ab48-c23db4b7bfc5_mirnaseq_gdc_realn.bam 320699990 BAM harmonized CPTAC3 ef9d17f8-dd6a-4c0e-9bb2-cd7da24fd6c9 b36ff62fc11ded09a8d8c870331f47ad {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor"} -C3L-02364.RNA-Seq.chimeric.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.chimeric.gdc_realn.bam 150384525 BAM chimeric harmonized CPTAC3 400a2181-f03d-4ef9-b3d9-6c3466a54720 a30f209e04c849e2fd23d84510f3804a {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.RNA-Seq.chimeric.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.chimeric.gdc_realn.bam 30975094 BAM chimeric harmonized CPTAC3 d6f3517e-77b2-4830-8ecc-8b1cde182ba5 70e529813c7dd3a3e9b3d9f1c6a610cd {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor"} -C3L-02364.RNA-Seq.genomic.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.genomic.gdc_realn.bam 8366887850 BAM genomic harmonized CPTAC3 197708f8-3949-4d30-983c-7a61312f3980 bc4b8dbb07f660e2996bfb3548ba7438 {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.RNA-Seq.genomic.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.genomic.gdc_realn.bam 7650838719 BAM genomic harmonized CPTAC3 4d9c4a88-7c06-44cc-ab8d-6a9c775da850 955304ff688153cc3c4a147ca91372ee {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor"} -C3L-02364.RNA-Seq.S5_L004_R1.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R1_001.fastq.gz 3592581909 FASTQ S5_L004_R1 unaligned CPTAC3 0760a34f-9aea-4ff2-b483-d839ed122de2 fee70dafcc61ed2651ba9b5a4aeb2668 {"aliquot_tag": "ALQ_f69a03e3", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.RNA-Seq.S5_L004_R2.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R2_001.fastq.gz 3977423642 FASTQ S5_L004_R2 unaligned CPTAC3 0eef987f-3753-4acb-9eaf-a53b8ea4eadc 733367344938884f3c0d9d6d73fe696b {"aliquot_tag": "ALQ_f69a03e3", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.RNA-Seq.S9_L003_R1.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3451829844 FASTQ S9_L003_R1 unaligned CPTAC3 5e5a9caa-7311-4fd9-b74f-88bfa77fd888 b3cb476a9832586c69a9e2dce05f699c {"aliquot_tag": "ALQ_d915a013", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02364.RNA-Seq.S9_L003_R2.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3820695719 FASTQ S9_L003_R2 unaligned CPTAC3 383c1c61-a592-4c23-81cf-93b388dd9c49 3fb31b4b5706c911c0e4ef705ffe7e3a {"aliquot_tag": "ALQ_d915a013", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02364.RNA-Seq.transcriptome.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.transcriptome.gdc_realn.bam 8912448620 BAM transcriptome harmonized CPTAC3 5f1894ac-c6f0-4e16-b043-3130610b6651 ad822cc52e342f0cba3cca62e3d907ea {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.RNA-Seq.transcriptome.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.transcriptome.gdc_realn.bam 8629429789 BAM transcriptome harmonized CPTAC3 ec7e390c-1f89-46fd-b90b-53394c15e64e 9a22c16339e5e3640c0889c71ef7dd79 {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor"} -C3L-02364.WGS.A C3L-02364 CCRCC WGS tissue_normal CPT0113280006 CPT0113280006.WholeGenome.RP-1303.bam 60983564762 BAM aligned CPTAC3 72f87f5c-9e87-4187-b9d4-81eac9befeb7 a9dffecf2c7f964ee70bd6b43e575077 {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.WGS.A.hg38 C3L-02364 CCRCC WGS tissue_normal CPT0113280006 a96ef00f-c92d-40cc-b40f-f804e9fd3b63_wgs_gdc_realn.bam 89049644192 BAM harmonized CPTAC3 9de6301d-0126-4bc9-93c4-977bbd40b927 6d268ee8458235dc266d7f8e3c0b21cc {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.WGS.N C3L-02364 CCRCC WGS blood_normal CPT0115270002 CPT0115270002.WholeGenome.RP-1303.bam 50169806576 BAM aligned CPTAC3 92678a26-775d-4c72-beb2-640e1697e1a5 f1800f7b09c3099a15fd62865888dfda {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal"} -C3L-02364.WGS.N.hg38 C3L-02364 CCRCC WGS blood_normal CPT0115270002 be8f1237-9410-41ce-b51f-f44bf6373a98_wgs_gdc_realn.bam 73309023961 BAM harmonized CPTAC3 72808c26-caba-4ebb-b603-dc372d801b98 6ff960cae442a4712e77f612520d77fd {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal"} -C3L-02364.WGS.T C3L-02364 CCRCC WGS tumor CPT0113260009 CPT0113260009.WholeGenome.RP-1303.bam 56560603145 BAM aligned CPTAC3 7132a0c2-b589-4f76-aadc-9ee695a27e5d a492ddcfbc07ac374a33752a33d2aea3 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor"} -C3L-02364.WGS.T.hg38 C3L-02364 CCRCC WGS tumor CPT0113260009 e132f354-c423-4c15-bc4b-20373f2f57b0_wgs_gdc_realn.bam 82234303992 BAM harmonized CPTAC3 a06b3fcd-7daf-4b3c-a823-935e4a5b929f afbb56a26fb6e69b78d5bb7284f3be2d {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor"} -C3L-02364.WXS.A C3L-02364 CCRCC WXS tissue_normal CPT0113280006 CPT0113280006.WholeExome.RP-1303.bam 21769874138 BAM aligned CPTAC3 886440c5-ae68-45e2-b530-b903eec66db8 99283496ed78b0d9b3648356bcf6f07c {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.WXS.A.hg38 C3L-02364 CCRCC WXS tissue_normal CPT0113280006 a96ef00f-c92d-40cc-b40f-f804e9fd3b63_wxs_gdc_realn.bam 30213100412 BAM harmonized CPTAC3 dca7c30b-5013-476b-9984-ba1479a7a21f 4bcbc10f17299754619e171ee6d9745c {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02364.WXS.N C3L-02364 CCRCC WXS blood_normal CPT0115270002 CPT0115270002.WholeExome.RP-1303.bam 21208894349 BAM aligned CPTAC3 bc041187-47a8-4fb8-9531-eb6fd2cb412b d27a97fc23248a5941ad44979d2035d7 {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal"} -C3L-02364.WXS.N.hg38 C3L-02364 CCRCC WXS blood_normal CPT0115270002 be8f1237-9410-41ce-b51f-f44bf6373a98_wxs_gdc_realn.bam 29379243534 BAM harmonized CPTAC3 afe5004f-2697-474a-b81e-f7987f7cd071 df581dc806287680128fb637eb526d05 {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal"} -C3L-02364.WXS.T C3L-02364 CCRCC WXS tumor CPT0113260009 CPT0113260009.WholeExome.RP-1303.bam 19066566800 BAM aligned CPTAC3 f95b60c0-6401-4e3a-9e3c-60ebbcc31cb2 0407b9f6d24dafaca6cb148598c7b6ed {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor"} -C3L-02364.WXS.T.hg38 C3L-02364 CCRCC WXS tumor CPT0113260009 e132f354-c423-4c15-bc4b-20373f2f57b0_wxs_gdc_realn.bam 26340453776 BAM harmonized CPTAC3 6aeae5c1-1438-4c81-b877-3fbc09c1a6da d627ccc95502c3d0f3077004127fe0e2 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor"} -C3L-02365.DUP_6a761e9e.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM aligned CPTAC3 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -C3L-02365.DUP_6a761e9e.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM harmonized CPTAC3 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -C3L-02365.MethArray.Green.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9c3593b4-6c5b-4da1-8084-a9d4dcce816f ee342bb20ebe602c5992e30e21836621 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.MethArray.Green.T C3L-02365 LUAD Methylation_Array tumor CPT0114840009 202234370079_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a6a029c9-907e-42bf-b35e-9327945ee385 6d7a82e273411bf0ba42c3138f6a6622 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor"} -C3L-02365.MethArray.Red.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 f777f75b-bbe5-44de-89d5-a303cd6b132c 32dbb653f900c4616e3f3646541972e7 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.MethArray.Red.T C3L-02365 LUAD Methylation_Array tumor CPT0114840009 202234370079_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3995c3b8-3964-4224-b659-0c75c5fdc6eb 4b957bcb7424e83c504cbd5df223ab2f {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor"} -C3L-02365.miRNA-Seq.A.hg38 C3L-02365 LUAD miRNA-Seq tissue_normal CPT0114880009 a445402e-df99-4c13-844d-139ca5d42455_mirnaseq_gdc_realn.bam 236498690 BAM harmonized CPTAC3 778c1ccc-3af5-443a-8e15-1b40b323147d cb4cbcf045faee59f5ea20588d1bbce5 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.miRNA-Seq.S2_L005_R1.A C3L-02365 LUAD miRNA-Seq tissue_normal CPT0114880009 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L005_R1_001.unaln.bam 209178672 BAM S2_L005_R1 unaligned CPTAC3 e40723fc-7241-4fea-a542-d005aefb664e 6bf6810149cfd06fea79b3cbbaa1b8d8 {"aliquot_tag": "ALQ_92a61e0b", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.miRNA-Seq.S45_L003_R1.T C3L-02365 LUAD miRNA-Seq tumor CPT0114840006 181119_UNC31-K00269_0165_AH27WCBBXY_GTTTCG_S45_L003_R1_001.unaln.bam 172876639 BAM S45_L003_R1 unaligned CPTAC3 5742bcae-2dd8-4a7c-aa6c-fc0c10061b1c 5ce11d1778eeb4f924e8cd2f5926a5fc {"aliquot_tag": "ALQ_c7e9ee9b", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02365.miRNA-Seq.T.hg38 C3L-02365 LUAD miRNA-Seq tumor CPT0114840006 bdaebd87-fa8f-46ea-8761-82bc2abebdb9_mirnaseq_gdc_realn.bam 185197459 BAM harmonized CPTAC3 3d24262b-a1e5-48e9-9b07-fcdd469027a5 774e5603bb70841319bacbdac843d472 {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor"} -C3L-02365.RNA-Seq.chimeric.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.chimeric.gdc_realn.bam 41680663 BAM chimeric harmonized CPTAC3 e49bb3f1-1603-44a5-a2bf-8472a52715c0 c2138312dcbe8c1d4ff0c454265d3089 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.RNA-Seq.chimeric.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.chimeric.gdc_realn.bam 186437140 BAM chimeric harmonized CPTAC3 4178b378-39a6-4f1f-8357-965ebd825b58 6a6c18e1ff076ca8cef8977ddc00d85f {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor"} -C3L-02365.RNA-Seq.genomic.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.genomic.gdc_realn.bam 8407803483 BAM genomic harmonized CPTAC3 ad425303-24db-4abd-be3f-7853e743c6e5 445c54d6153c268fd7b1fe8a2ea447f4 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.RNA-Seq.genomic.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.genomic.gdc_realn.bam 9610951003 BAM genomic harmonized CPTAC3 a5ccbff2-a184-4b71-a65a-8ef8bccf2f50 e593e582671b0f00ecfa18547678f40c {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor"} -C3L-02365.RNA-Seq.S14_L004_R1.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R1_001.fastq.gz 4055727794 FASTQ S14_L004_R1 unaligned CPTAC3 def212c8-4bb1-491c-a15e-fa5497f6ce76 4f76ff6a92b4c3d7585295f876388638 {"aliquot_tag": "ALQ_c7e9ee9b", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02365.RNA-Seq.S14_L004_R2.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4579933959 FASTQ S14_L004_R2 unaligned CPTAC3 aeea12ca-8e11-48ad-8e9e-1ffb0c0a489d 00b37d7a5075bba83d32a55ef6b0bb83 {"aliquot_tag": "ALQ_c7e9ee9b", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02365.RNA-Seq.S18_L005_R1.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4160773101 FASTQ S18_L005_R1 unaligned CPTAC3 14b2e96f-9ac2-44ff-bf6f-2edd8b731c80 0ad019ad24ad132718a6ac326f1e0ef7 {"aliquot_tag": "ALQ_92a61e0b", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.RNA-Seq.S18_L005_R2.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4349949528 FASTQ S18_L005_R2 unaligned CPTAC3 b09f37a7-3a9a-4f98-873d-d53d6502a79b f6e0fd433f183b2c5f4abd187c53f2e3 {"aliquot_tag": "ALQ_92a61e0b", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.RNA-Seq.transcriptome.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.transcriptome.gdc_realn.bam 9741811435 BAM transcriptome harmonized CPTAC3 75cdef9c-30e0-419e-aa03-fbc70cde4914 859222acea9e5817cfc8bd963868fcc4 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.RNA-Seq.transcriptome.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.transcriptome.gdc_realn.bam 10349407018 BAM transcriptome harmonized CPTAC3 0fae204d-5eba-4e8a-900a-618e4adafb05 b104640d5c759197f4cab76e46d0de49 {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor"} -C3L-02365.WGS.A C3L-02365 LUAD WGS tissue_normal CPT0114880006 CPT0114880006.WholeGenome.RP-1303.bam 55743582468 BAM aligned CPTAC3 d6add0e5-4740-40c0-90d5-f76962a0c4eb 0c56eb89474a3529acc59f7996ab17b4 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.WGS.A.hg38 C3L-02365 LUAD WGS tissue_normal CPT0114880006 d06fc371-1140-4b9b-85dc-0f57abda4664_wgs_gdc_realn.bam 82765455584 BAM harmonized CPTAC3 39b8d8ac-9fee-492c-bead-e9d1cfce086d 164993c71c5c7b58215ede97ac6a7031 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.WGS.N C3L-02365 LUAD WGS blood_normal CPT0116900002 CPT0116900002.WholeGenome.RP-1303.bam 62636089173 BAM aligned CPTAC3 e1cf332e-62fa-4caa-b47c-c308f9f92d1a 18eae961fa0bbaf6b4b51fd6c678fbcf {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal"} -C3L-02365.WGS.N.hg38 C3L-02365 LUAD WGS blood_normal CPT0116900002 bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wgs_gdc_realn.bam 92748330856 BAM harmonized CPTAC3 5a832acb-f0ed-4bac-b73b-fe54daf62b1a ca29d9b33198612cfe8a9b6a0d601ea5 {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal"} -C3L-02365.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009 CPT0114840009.WholeGenome.RP-1303.bam 55967118343 BAM aligned CPTAC3 606c007e-32a3-485a-847f-cc691d1bb307 9eeb3954ef1adc9ca465f82600d214b5 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor"} -C3L-02365.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009 1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wgs_gdc_realn.bam 82750501676 BAM harmonized CPTAC3 cbafe4ae-36af-4011-9ce8-0ea290c6373b 95a7a0c9c06fa948b7980da609e08a47 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor"} -C3L-02365.WXS.A C3L-02365 LUAD WXS tissue_normal CPT0114880006 CPT0114880006.WholeExome.RP-1303.bam 33401060054 BAM aligned CPTAC3 b18e30e0-41f5-4761-812f-93a1f6a02b41 dec941d8db572fa44e2c2b6de58aefa0 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.WXS.A.hg38 C3L-02365 LUAD WXS tissue_normal CPT0114880006 d06fc371-1140-4b9b-85dc-0f57abda4664_wxs_gdc_realn.bam 44834783361 BAM harmonized CPTAC3 e57292ba-138c-4fda-bd41-6f45f211a0a2 c48da16cddcf07720d88d28edfd96d37 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02365.WXS.N C3L-02365 LUAD WXS blood_normal CPT0116900002 CPT0116900002.WholeExome.RP-1303.bam 34586669883 BAM aligned CPTAC3 d083462b-4a5e-40a6-b8a3-847eb89baac8 bb1f95584ad9665e15e79c7415b45950 {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal"} -C3L-02365.WXS.N.hg38 C3L-02365 LUAD WXS blood_normal CPT0116900002 bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wxs_gdc_realn.bam 45908325616 BAM harmonized CPTAC3 b32dc9a8-2412-4aaf-aa8c-1e87ac06598e 6ef2532b56ee033ab52b1772f0beb236 {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal"} -C3L-02365.WXS.T C3L-02365 LUAD WXS tumor CPT0114840009 CPT0114840009.WholeExome.RP-1303.bam 40580681362 BAM aligned CPTAC3 91976792-69ae-4bd7-8eb3-62af07cc199d 4786188f056fb59d3daef1d7409455aa {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor"} -C3L-02365.WXS.T.hg38 C3L-02365 LUAD WXS tumor CPT0114840009 1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wxs_gdc_realn.bam 55216112491 BAM harmonized CPTAC3 9c7a472d-ee9a-4408-a8e1-08893843d913 b7902f76c9ca556e1160d80ac3863b8d {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor"} -C3L-02382.MethArray.Green.T C3L-02382 UCEC Methylation_Array tumor CPT0190700011 203561620085_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e7c5df1f-3ed8-42a9-9e21-5011e89d9318 4c52e3b6f906d760bb7007396b4e50f3 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor"} -C3L-02382.MethArray.Red.T C3L-02382 UCEC Methylation_Array tumor CPT0190700011 203561620085_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 cc54843c-6724-4848-bc0c-03f8dd0985eb 23e967a8e66f09a15912391e6fcf6ce3 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor"} -C3L-02382.miRNA-Seq.S12_L001_R1.T C3L-02382 UCEC miRNA-Seq tumor CPT0190700014 190508_UNC31-K00269_0215_BH7FYKBBXY_CTTGTA_S12_L001_R1_001.unaln.bam 282766675 BAM S12_L001_R1 unaligned CPTAC3 c7d1995c-cc95-4c2e-b6a3-50a6f91cc8ec 879c0d4f2e2fd0565724ed6f7be6a735 {"aliquot_tag": "ALQ_13809545", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02382.miRNA-Seq.T.hg38 C3L-02382 UCEC miRNA-Seq tumor CPT0190700014 b7dd3171-6eb8-48ee-b10e-3674d257be2a_mirnaseq_gdc_realn.bam 316802278 BAM harmonized CPTAC3 ea4889a0-9dba-4078-8146-706ca322afe5 f2481ddc9a964e2e3459f882073e6822 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.chimeric.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.chimeric.gdc_realn.bam 30771439 BAM chimeric harmonized CPTAC3 0d0d9e95-68a1-4d97-92e9-1a70eaaa6c8e 504eec6b6e7eae4c4584139bd1464276 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.chimeric.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.chimeric.gdc_realn.bam 237010281 BAM chimeric harmonized CPTAC3 a0ea0c8c-9a2c-46c3-9575-2b9be731ef95 23d03490905d3bbfa70effb5b8c0f821 {"aliquot_tag": "ALQ_f5b1a52b", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.genomic.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.genomic.gdc_realn.bam 8285468783 BAM genomic harmonized CPTAC3 b8c373a4-1532-4087-a5dc-c52527e374d8 0ba42a578778093cea62df765b630b78 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.genomic.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.genomic.gdc_realn.bam 12932715279 BAM genomic harmonized CPTAC3 69a77c5f-5626-4442-a39b-99492372fc86 bbf0a28b3032a7715960739b0cec9fa0 {"aliquot_tag": "ALQ_f5b1a52b", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.S16_L005_R1.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R1_001.fastq.gz 3952812170 FASTQ S16_L005_R1 unaligned CPTAC3 7594d19b-2b59-4ea9-a5a9-ccea3d390086 e521e7e934646ac700b6ae69541ec5f3 {"aliquot_tag": "ALQ_13809545", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.S16_L005_R2.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R2_001.fastq.gz 4546673484 FASTQ S16_L005_R2 unaligned CPTAC3 73028a48-123b-458e-aa5f-025e9bc8f7da 95a097558122ac343fea0525e00cb0a6 {"aliquot_tag": "ALQ_13809545", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.S64_R1.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R1_001.fastq.gz 8767665783 FASTQ S64_R1 unaligned CPTAC3 14dd1167-b8b7-48f7-b145-df38c9aceb23 335827e52a086af58c15051535fdde60 {"aliquot_tag": "ALQ_f5b1a52b", "sample": "S64", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.S64_R2.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R2_001.fastq.gz 9053086603 FASTQ S64_R2 unaligned CPTAC3 64e8f5a3-1cb1-4fb4-a1b2-e1bd00e4d449 a2b11403561bb662f6a4738f08e1fc10 {"aliquot_tag": "ALQ_f5b1a52b", "sample": "S64", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.transcriptome.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.transcriptome.gdc_realn.bam 10988164918 BAM transcriptome harmonized CPTAC3 6f5e689e-ec21-49ce-949b-649008e99d81 9e802007f8febb0a41e738b9334c0648 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor"} -C3L-02382.RNA-Seq.transcriptome.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.transcriptome.gdc_realn.bam 8790830157 BAM transcriptome harmonized CPTAC3 90ef0355-feeb-4f88-aedd-22b9b93d95e0 e1b8a6a50b3b6e3d2cd51e59cc309c07 {"aliquot_tag": "ALQ_f5b1a52b", "gdc_sample_type": "Primary Tumor"} -C3L-02382.WGS.N C3L-02382 UCEC WGS blood_normal CPT0191130002 CPT0191130002.WholeGenome.RP-1303.bam 54101923574 BAM aligned CPTAC3 120d369a-fa8c-402d-ad1d-e3adb52e7029 9de6cb3644029272e3301bd3ae8f7da4 {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal"} -C3L-02382.WGS.N.hg38 C3L-02382 UCEC WGS blood_normal CPT0191130002 bd1f3127-c66e-4b93-999b-c6f353153827_wgs_gdc_realn.bam 78735814802 BAM harmonized CPTAC3 7e14a55f-0c7f-48b1-9169-d4492763577c 6800894ee977d8051df5fad8915e962c {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal"} -C3L-02382.WGS.T C3L-02382 UCEC WGS tumor CPT0190700011 CPT0190700011.WholeGenome.RP-1303.bam 83527488477 BAM aligned CPTAC3 198aef96-fa03-4e05-9170-c88c235c80a7 2a546d5d0b74e8aba2da66a2a30fc0f2 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor"} -C3L-02382.WGS.T.hg38 C3L-02382 UCEC WGS tumor CPT0190700011 a0d029e3-90a5-4e03-aa62-09f2ed987e5d_wgs_gdc_realn.bam 124363446875 BAM harmonized CPTAC3 3828a7e9-be1f-4e9a-8a2b-ced4905501b0 dee2d363da121f17c478ba572d448bd6 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor"} -C3L-02382.WXS.N C3L-02382 UCEC WXS blood_normal CPT0191130002 CPT0191130002.WholeExome.RP-1303.bam 23929495249 BAM aligned CPTAC3 91f42641-ddef-4a95-898c-09c0ca98d744 9afffb0b6dae3c2c89a6c8743bf1daa1 {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal"} -C3L-02382.WXS.N.hg38 C3L-02382 UCEC WXS blood_normal CPT0191130002 bd1f3127-c66e-4b93-999b-c6f353153827_wxs_gdc_realn.bam 32990252943 BAM harmonized CPTAC3 948bfb9d-6104-41b1-837d-eb9a430253d7 1d759b754d81f1cb274ad83f7b633ec6 {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal"} -C3L-02382.WXS.T C3L-02382 UCEC WXS tumor CPT0190700011 CPT0190700011.WholeExome.RP-1303.bam 27902696607 BAM aligned CPTAC3 5649cf6b-91df-4419-9328-29aad116bed9 0a8e82db985b214f19321738ba9630fb {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor"} -C3L-02382.WXS.T.hg38 C3L-02382 UCEC WXS tumor CPT0190700011 a0d029e3-90a5-4e03-aa62-09f2ed987e5d_wxs_gdc_realn.bam 39422681228 BAM harmonized CPTAC3 5a88a6ab-439c-4da9-b1f3-ad887ab5a23a 2d0c17602a170f180346b19d1283b6a7 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor"} -C3L-02384.MethArray.Green.T C3L-02384 UCEC Methylation_Array tumor CPT0127980006 203027390091_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b56d405d-ae0a-4974-89fd-67e9bc76c618 d3f0b3ccb138cbea3e34e95f77242123 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor"} -C3L-02384.MethArray.Red.T C3L-02384 UCEC Methylation_Array tumor CPT0127980006 203027390091_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 e40cad2a-fdca-4a7d-83d2-2e56be15d6ac f3f63ed02889b8e7c93b01d0400fde92 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor"} -C3L-02384.miRNA-Seq.S33_L002_R1.T C3L-02384 UCEC miRNA-Seq tumor CPT0127980009 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L002_R1_001.unaln.bam 166767275 BAM S33_L002_R1 unaligned CPTAC3 ed3df266-b020-48e1-91e9-836bb9564e47 eae52df44a29f40ac9d1d1ea4addd6bd {"aliquot_tag": "ALQ_e69dd0d0", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02384.miRNA-Seq.T.hg38 C3L-02384 UCEC miRNA-Seq tumor CPT0127980009 04d89c11-18ec-4171-bfb5-55576d987cc2_mirnaseq_gdc_realn.bam 186018585 BAM harmonized CPTAC3 af799cdf-4b8f-4f53-86f6-8638599b758f d5692b3aad366df2667e5a7f41e2cca0 {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.chimeric.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.chimeric.gdc_realn.bam 62557681 BAM chimeric harmonized CPTAC3 2d0293fb-6e78-49dc-a24d-61af0c31df0f 63b16a618512d8ff37e888a1e7b38e13 {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.chimeric.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.chimeric.gdc_realn.bam 116999519 BAM chimeric harmonized CPTAC3 74124573-4c49-4ab8-8a27-d2506aa6f38d 8ecc792a37e158cab6bfbb2c8aeff556 {"aliquot_tag": "ALQ_9713202", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.genomic.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.genomic.gdc_realn.bam 8441176057 BAM genomic harmonized CPTAC3 d1e6783d-50da-47d7-bab4-1655911889da db7e7ca3f5a467cb66e83c9645c62ab0 {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.genomic.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.genomic.gdc_realn.bam 5326529720 BAM genomic harmonized CPTAC3 c6bcc09c-0966-49bc-9561-4871f47d8a1e 5859ffbc96945e1c9a529a1097f15b68 {"aliquot_tag": "ALQ_9713202", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.S12_L003_R1.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3725621544 FASTQ S12_L003_R1 unaligned CPTAC3 bdfbbbe6-04e0-4e78-8479-ef149f9f1f24 dfda243609a21e7c48f13a547ba67549 {"aliquot_tag": "ALQ_e69dd0d0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.S12_L003_R2.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4020253681 FASTQ S12_L003_R2 unaligned CPTAC3 7c24aefc-d4ad-4ee9-8525-7b13339c71f3 668e83ab8f083b0ab0ac95071a73ae3d {"aliquot_tag": "ALQ_e69dd0d0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.S91_R1.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R1_001.fastq.gz 2861677123 FASTQ S91_R1 unaligned CPTAC3 d8af1324-8bb2-46e3-bd40-5fca2817d841 dafc108e1893e09b9a34ed243247091a {"aliquot_tag": "ALQ_9713202", "sample": "S91", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.S91_R2.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R2_001.fastq.gz 2917925766 FASTQ S91_R2 unaligned CPTAC3 f0fc043c-a81d-4393-9780-eeb93e4f6332 8ba8d9b44d1674553ec65b245a720495 {"aliquot_tag": "ALQ_9713202", "sample": "S91", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.transcriptome.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.transcriptome.gdc_realn.bam 9628658441 BAM transcriptome harmonized CPTAC3 9111b4c1-ebdc-4f0f-8c88-4f6c154bdb31 db049619da95f2b4c2d10b8df537fd9c {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor"} -C3L-02384.RNA-Seq.transcriptome.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.transcriptome.gdc_realn.bam 2386084925 BAM transcriptome harmonized CPTAC3 3c167622-d2b7-40da-a602-86837cbe5631 f36b41c3743909a101ade3fcf991e018 {"aliquot_tag": "ALQ_9713202", "gdc_sample_type": "Primary Tumor"} -C3L-02384.WGS.N C3L-02384 UCEC WGS blood_normal CPT0128070002 CPT0128070002.WholeGenome.RP-1303.bam 65148791648 BAM aligned CPTAC3 9e277088-2781-43dc-9ac3-d19ab86a351e 252ffb0ef006b670d0fe13d2c56f2e95 {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02384.WGS.N.hg38 C3L-02384 UCEC WGS blood_normal CPT0128070002 792b7e93-6bc8-44fa-a854-dbb0f3dda028_wgs_gdc_realn.bam 95396220753 BAM harmonized CPTAC3 400e122b-e3cd-4182-b102-890253b8025e ebb7bcf02816f47f6df542da1bb3db98 {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02384.WGS.T C3L-02384 UCEC WGS tumor CPT0127980006 CPT0127980006.WholeGenome.RP-1303.bam 59029359103 BAM aligned CPTAC3 66156160-234c-4c13-91f0-dfee89f1b8a9 ba516f274a477224cb4030f844a93a12 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor"} -C3L-02384.WGS.T.hg38 C3L-02384 UCEC WGS tumor CPT0127980006 a2c0f4db-6913-4e6f-8693-0d243546eb12_wgs_gdc_realn.bam 84611129500 BAM harmonized CPTAC3 22c59457-edc6-4635-9a99-041c100ba03f 5b6727e7f2e559b4d71f221344d7b759 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor"} -C3L-02384.WXS.N C3L-02384 UCEC WXS blood_normal CPT0128070002 CPT0128070002.WholeExome.RP-1303.bam 33689751371 BAM aligned CPTAC3 a47c1eac-c5ee-47b6-885b-ee76be34a761 f4bede1bc8e722c924baf8e5d15be35f {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02384.WXS.N.hg38 C3L-02384 UCEC WXS blood_normal CPT0128070002 792b7e93-6bc8-44fa-a854-dbb0f3dda028_wxs_gdc_realn.bam 45175975215 BAM harmonized CPTAC3 e1325f27-84f5-481a-976a-bf7461e55487 f302598605b5c5cb1f65f3d1c34e9987 {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02384.WXS.T C3L-02384 UCEC WXS tumor CPT0127980006 CPT0127980006.WholeExome.RP-1303.bam 26154182968 BAM aligned CPTAC3 d6289ca6-8982-4e11-861d-a7ea79b0945f 8540eb669f3b5a53e6fa21be61038052 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor"} -C3L-02384.WXS.T.hg38 C3L-02384 UCEC WXS tumor CPT0127980006 a2c0f4db-6913-4e6f-8693-0d243546eb12_wxs_gdc_realn.bam 35063984518 BAM harmonized CPTAC3 7ce6af67-03a5-45b3-a81c-a73c4f1d2310 f17e2137ac6ee7b7425c92ba9d94e5de {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor"} -C3L-02389.MethArray.Green.T C3L-02389 UCEC Methylation_Array tumor CPT0203040011 203561620095_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 53001908-355b-4d0c-8eff-bc3ae13815e9 4c361d4e5fb8d45e5b96face67652bc9 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.MethArray.Red.T C3L-02389 UCEC Methylation_Array tumor CPT0203040011 203561620095_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5460a05d-f51f-42cf-9f1a-14690bd67981 bdc18df3d5504381d02e8aa4a429bccb {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.miRNA-Seq.S12_L003_R1.T C3L-02389 UCEC miRNA-Seq tumor CPT0203040014 190508_UNC31-K00269_0215_BH7FYKBBXY_CTTGTA_S12_L003_R1_001.unaln.bam 224519411 BAM S12_L003_R1 unaligned CPTAC3 b31f4018-7b95-4b8f-9757-6db5d67a526c e1eb27dfee08f4b9141a53b5aaab2e4d {"aliquot_tag": "ALQ_ec2f3e4e", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.miRNA-Seq.T.hg38 C3L-02389 UCEC miRNA-Seq tumor CPT0203040014 8931bc71-26ff-46ba-9a69-2584634bd34f_mirnaseq_gdc_realn.bam 259332228 BAM harmonized CPTAC3 d310888b-bfa0-49e4-aca4-b049ae4bcd47 4e673b5f500a8a7b5253ae843152775c {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.chimeric.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.chimeric.gdc_realn.bam 33600832 BAM chimeric harmonized CPTAC3 177bd8ed-b12a-42fb-9930-a924374f6d88 32bada291b61d54c4c9a500eeb3cc608 {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.chimeric.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.chimeric.gdc_realn.bam 105359826 BAM chimeric harmonized CPTAC3 71b16b63-d16f-498c-9a65-a3b47ff668f0 0250b22d60e6e838f18f25a72b7da3fb {"aliquot_tag": "ALQ_ff9ea8e0", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.genomic.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.genomic.gdc_realn.bam 8039571121 BAM genomic harmonized CPTAC3 28516c3e-6b11-4c9e-ab00-ec4d6f6c328a 4a2effff2f6395115c3d615fa65912e1 {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.genomic.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.genomic.gdc_realn.bam 6879574423 BAM genomic harmonized CPTAC3 8f65b959-8297-463c-b835-4dde2863cf06 7ef48e9a6e8b53e4f01c3bc7d66bde32 {"aliquot_tag": "ALQ_ff9ea8e0", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.S32_L008_R1.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R1_001.fastq.gz 3891701366 FASTQ S32_L008_R1 unaligned CPTAC3 0a6a3cf3-5b8d-4120-9c9c-00967b9657cd a2b7ac7236e5a1036669e94573603b39 {"aliquot_tag": "ALQ_ec2f3e4e", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.S32_L008_R2.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R2_001.fastq.gz 4413028877 FASTQ S32_L008_R2 unaligned CPTAC3 93f35bdd-dd49-4781-90cb-c27fc986b796 527493946f2e74606b920edaeda25615 {"aliquot_tag": "ALQ_ec2f3e4e", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.S64_R1.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R1_001.fastq.gz 5043750880 FASTQ S64_R1 unaligned CPTAC3 7d635c2f-0eb6-4678-adf9-5dac2bee265c b7582ceaf21844bca6b116871c946ef5 {"aliquot_tag": "ALQ_ff9ea8e0", "sample": "S64", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.S64_R2.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R2_001.fastq.gz 5159183647 FASTQ S64_R2 unaligned CPTAC3 bf456a4a-e97a-48a6-9275-d470e31224da 0168c1887f2b569ebfea5ad21b94194c {"aliquot_tag": "ALQ_ff9ea8e0", "sample": "S64", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.transcriptome.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.transcriptome.gdc_realn.bam 12099997474 BAM transcriptome harmonized CPTAC3 133339ae-5426-4928-bea4-f4793c6ae8eb e60d89afa0cf0928c1ee6de62723aeca {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor"} -C3L-02389.RNA-Seq.transcriptome.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.transcriptome.gdc_realn.bam 4694010963 BAM transcriptome harmonized CPTAC3 88bb095f-f5e9-4394-98f7-29344092c757 0c93c357349263c9e71c71dca6ea09c6 {"aliquot_tag": "ALQ_ff9ea8e0", "gdc_sample_type": "Primary Tumor"} -C3L-02389.WGS.N C3L-02389 UCEC WGS blood_normal CPT0203130002 CPT0203130002.WholeGenome.RP-1303.bam 76417288871 BAM aligned CPTAC3 b3099cef-6986-468f-b8a2-bfb1f4a6db59 d90815744eaedb5779e38729ac84b3d9 {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02389.WGS.N.hg38 C3L-02389 UCEC WGS blood_normal CPT0203130002 9a7657a7-f7d0-4df9-bd1a-fe708f683f78_wgs_gdc_realn.bam 110533470294 BAM harmonized CPTAC3 cbf88027-f2f7-41f6-954e-dac3b7e73e16 dd4236605ffd3ba38a2e99c9cf3c61fc {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02389.WGS.T C3L-02389 UCEC WGS tumor CPT0203040011 CPT0203040011.WholeGenome.RP-1303.bam 57890905829 BAM aligned CPTAC3 472ceb8a-cffb-4f8f-9e66-29bd453b5564 81b3476f1b86ac3b7c1a911a99f2a3a6 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.WGS.T.hg38 C3L-02389 UCEC WGS tumor CPT0203040011 cb67a9c4-89aa-48a8-8a01-5a7f991bc7a6_wgs_gdc_realn.bam 83403626473 BAM harmonized CPTAC3 348f3eeb-e418-4596-8915-c3423f148022 9545dbbc193c4e71f5af8bbf067f6ab1 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.WXS.N C3L-02389 UCEC WXS blood_normal CPT0203130002 CPT0203130002.WholeExome.RP-1303.bam 24845039155 BAM aligned CPTAC3 ee5c06c0-94a6-45e7-8ba5-27a4edee654c e89c4268159cf1d72480d43c33961225 {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02389.WXS.N.hg38 C3L-02389 UCEC WXS blood_normal CPT0203130002 9a7657a7-f7d0-4df9-bd1a-fe708f683f78_wxs_gdc_realn.bam 33628536417 BAM harmonized CPTAC3 36f2568e-ed7d-49aa-93d3-da5121e00e3c 655dc3d6a3bc932d88a80f991b6607be {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02389.WXS.T C3L-02389 UCEC WXS tumor CPT0203040011 CPT0203040011.WholeExome.RP-1303.bam 22979464870 BAM aligned CPTAC3 e2efa1f5-3e5b-46ba-858e-63ed2a7c707a 58117117d47e77f525281bce2651addb {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor"} -C3L-02389.WXS.T.hg38 C3L-02389 UCEC WXS tumor CPT0203040011 cb67a9c4-89aa-48a8-8a01-5a7f991bc7a6_wxs_gdc_realn.bam 32526533542 BAM harmonized CPTAC3 9e884511-c738-4ec3-8fe3-0f943b2bccbc ce94778b43d95c759a4e68257f93d5f1 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor"} -C3L-02392.MethArray.Green.T C3L-02392 UCEC Methylation_Array tumor CPT0203250011 203561620050_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 06c46edc-9c77-4ac0-bd73-00983054dcf7 e6be69b16ce4ba1cfa4ad019a9622634 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor"} -C3L-02392.MethArray.Red.T C3L-02392 UCEC Methylation_Array tumor CPT0203250011 203561620050_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 66ea3b62-44bd-49cd-90db-5668ac564f48 ab2be831f6b209103ee77c5e1d83a995 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor"} -C3L-02392.miRNA-Seq.S14_L003_R1.T C3L-02392 UCEC miRNA-Seq tumor CPT0203250014 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTTCC_S14_L003_R1_001.unaln.bam 306285615 BAM S14_L003_R1 unaligned CPTAC3 d5b2a374-1951-4b68-90d2-8cec94de1de5 d8fc2307779a3b41c6ec78a71be5cdbe {"aliquot_tag": "ALQ_9c87b6f5", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02392.miRNA-Seq.T.hg38 C3L-02392 UCEC miRNA-Seq tumor CPT0203250014 98f63f77-f21e-4d66-a55d-1db0c2d62644_mirnaseq_gdc_realn.bam 348073174 BAM harmonized CPTAC3 a8d45753-8d97-428e-a33f-82370c958e19 e7d96324531e20f06e144a8068b82520 {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.chimeric.gdc_realn.bam 39585498 BAM chimeric harmonized CPTAC3 d6706fa6-602a-4820-b817-b6eb70f69d49 42e7a42d56b6a30552c3a1d47435d749 {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.chimeric.gdc_realn.bam 124798421 BAM chimeric harmonized CPTAC3 ebd847fb-7d54-4c8a-91a3-89c12112f796 f036a5e3a8a7b5c265855dcbd70030e6 {"aliquot_tag": "ALQ_8f36205b", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.chimeric.gdc_realn.bam 294232459 BAM chimeric harmonized CPTAC3 6c77496c-de04-44b4-88c6-f385f394996d 64c80439f885a3af785c0e278db2e8ba {"aliquot_tag": "ALQ_61384177", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.genomic.gdc_realn.bam 8436125787 BAM genomic harmonized CPTAC3 2ec72315-c4c3-49e1-aa01-01308e4bec5f afce05edd52aae0e8f137cb229cb5c3d {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.genomic.gdc_realn.bam 6929352791 BAM genomic harmonized CPTAC3 54fc1b37-4fa0-4cb6-a60f-107698542b46 4a909a90a9c51e242092b3579145d68a {"aliquot_tag": "ALQ_8f36205b", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.genomic.gdc_realn.bam 13609938970 BAM genomic harmonized CPTAC3 de68cd72-2ac6-41af-9eb3-28569f3e10f3 c53a0e793e002b66ef5ab35e98698ada {"aliquot_tag": "ALQ_61384177", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.S26_L007_R1.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R1_001.fastq.gz 3976832811 FASTQ S26_L007_R1 unaligned CPTAC3 f602bb01-0d6a-49cb-a77c-1e571dd92e7f 7df3351043735cb1a6c6b2efb9fd419d {"aliquot_tag": "ALQ_9c87b6f5", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.S26_L007_R2.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R2_001.fastq.gz 4540670866 FASTQ S26_L007_R2 unaligned CPTAC3 d2edd54a-21a9-45e2-8800-544e1da013d2 f38a453a50bf2a27582c66ec435d9fe3 {"aliquot_tag": "ALQ_9c87b6f5", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.S59_R1.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R1_001.fastq.gz 10612461282 FASTQ S59_R1 unaligned CPTAC3 549723fd-6176-4acf-9351-7cbd8f12b82a 337e4472a9b66db047c4730a12f6d177 {"aliquot_tag": "ALQ_61384177", "sample": "S59", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.S59_R2.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R2_001.fastq.gz 10915270082 FASTQ S59_R2 unaligned CPTAC3 e91b958f-36e1-42c7-9975-45e8931ae219 fe3accca0a7add31a5dac1bd83e290ff {"aliquot_tag": "ALQ_61384177", "sample": "S59", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.S84_R1.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R1_001.fastq.gz 4227738116 FASTQ S84_R1 unaligned CPTAC3 8a02a875-b2b5-4678-936a-7b4790b44630 8d1f3d9d723a8d6a7226f40daa37c656 {"aliquot_tag": "ALQ_8f36205b", "sample": "S84", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.S84_R2.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R2_001.fastq.gz 4428759113 FASTQ S84_R2 unaligned CPTAC3 45263705-c7ff-429a-ba1b-3b47c0249872 12f48b0c6c46b24104cd48b64586e298 {"aliquot_tag": "ALQ_8f36205b", "sample": "S84", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.transcriptome.gdc_realn.bam 11385858289 BAM transcriptome harmonized CPTAC3 77e0e791-bbe5-480c-9596-5102172d7570 e4b5d790efbda652f1c8fde1264331c6 {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.transcriptome.gdc_realn.bam 4004495471 BAM transcriptome harmonized CPTAC3 be27f16f-d9d4-4fc6-b311-1d766070da12 eae15bd7e365882b12900ac5137c6161 {"aliquot_tag": "ALQ_8f36205b", "gdc_sample_type": "Primary Tumor"} -C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.transcriptome.gdc_realn.bam 9817117083 BAM transcriptome harmonized CPTAC3 0f1b3be9-794b-42e3-a96d-5a97ff038258 cd33d4097f47df62330f79672596143b {"aliquot_tag": "ALQ_61384177", "gdc_sample_type": "Primary Tumor"} -C3L-02392.WGS.N C3L-02392 UCEC WGS blood_normal CPT0203310002 CPT0203310002.WholeGenome.RP-1303.bam 73986187364 BAM aligned CPTAC3 0fec6ec2-a474-4088-a9c6-26f8d36fcdbd f343762118285683c7b2470ea51bd06b {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02392.WGS.N.hg38 C3L-02392 UCEC WGS blood_normal CPT0203310002 ebccbb2e-028d-40f4-8880-6dd3967edde8_wgs_gdc_realn.bam 107766832826 BAM harmonized CPTAC3 82831af9-d6ec-4673-8440-5cf41005227a de7df6ccd37ea45f0ba58b725fed2770 {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02392.WGS.T C3L-02392 UCEC WGS tumor CPT0203250011 CPT0203250011.WholeGenome.RP-1303.bam 80150789306 BAM aligned CPTAC3 143f0cc4-2c83-4fc3-8de0-c263ad3228f4 61311157786296a7c87c4f1739960556 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor"} -C3L-02392.WGS.T.hg38 C3L-02392 UCEC WGS tumor CPT0203250011 c964c60c-be35-45c6-b7a7-12b7fb3622f5_wgs_gdc_realn.bam 117962729732 BAM harmonized CPTAC3 6d07581d-a14e-44f3-98b7-af5d6eccd861 b187a01d2d09e8303d58c84ed76fbb51 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor"} -C3L-02392.WXS.N C3L-02392 UCEC WXS blood_normal CPT0203310002 CPT0203310002.WholeExome.RP-1303.bam 22866265523 BAM aligned CPTAC3 b2b349b6-2afe-4e1d-b868-86329323d8d5 07eb2fe64260a3df5317968084d18d02 {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02392.WXS.N.hg38 C3L-02392 UCEC WXS blood_normal CPT0203310002 ebccbb2e-028d-40f4-8880-6dd3967edde8_wxs_gdc_realn.bam 31542407905 BAM harmonized CPTAC3 5688d8f9-1b32-4fc7-b6e8-585e30a9974a b6d37ca2804ff800b5ea449b8abc7b62 {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02392.WXS.T C3L-02392 UCEC WXS tumor CPT0203250011 CPT0203250011.WholeExome.RP-1303.bam 26963643435 BAM aligned CPTAC3 7676d548-26f5-45d8-b455-2e6842eda68d ccc04ceab181809b5704a1dfae2c493e {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor"} -C3L-02392.WXS.T.hg38 C3L-02392 UCEC WXS tumor CPT0203250011 c964c60c-be35-45c6-b7a7-12b7fb3622f5_wxs_gdc_realn.bam 37850151190 BAM harmonized CPTAC3 ad48d8e4-cd04-441f-9621-a51d3cd0a1bc 425a3ea6148684d25abee5691fb6a165 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor"} -C3L-02395.MethArray.Green.T C3L-02395 UCEC Methylation_Array tumor CPT0128080006 203219670106_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c19eb287-4e28-4a23-a114-65e9f7da9c88 f8e831883f1d190971338de4d1d4f016 {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor"} -C3L-02395.MethArray.Red.T C3L-02395 UCEC Methylation_Array tumor CPT0128080006 203219670106_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 5fe79bbe-f9dc-4177-91b5-149dd8eacb7e 8147494086163c437bae731aacb5ad9d {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor"} -C3L-02395.miRNA-Seq.S39_L002_R1.T C3L-02395 UCEC miRNA-Seq tumor CPT0128080009 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 318814920 BAM S39_L002_R1 unaligned CPTAC3 8b53fc32-0ed2-45f5-b53f-1027e3383066 2325ab3fa630347199f88779cd35aa8c {"aliquot_tag": "ALQ_37daf1f1", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02395.miRNA-Seq.T.hg38 C3L-02395 UCEC miRNA-Seq tumor CPT0128080009 475c7dbf-1d2a-4bef-b70f-ba0c2ac1b536_mirnaseq_gdc_realn.bam 360959277 BAM harmonized CPTAC3 626edd29-b44f-4b49-830d-98bcdd488a16 e5b1838722cecebf01eef4dac8360b35 {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.chimeric.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.chimeric.gdc_realn.bam 104139959 BAM chimeric harmonized CPTAC3 e9ece0ea-ab1b-44ab-96c6-03e0b6705ed7 07901427d872f28d4be30277d32e7fcf {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.chimeric.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.chimeric.gdc_realn.bam 292196655 BAM chimeric harmonized CPTAC3 08c504cb-e102-4090-b75e-918d1edc7452 34ab50829340ee749a8a7510b5443aa8 {"aliquot_tag": "ALQ_4615073", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.genomic.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.genomic.gdc_realn.bam 9273609301 BAM genomic harmonized CPTAC3 58185e0c-ee16-4dcf-8c7d-98280b19f2d6 e5bc2957f0510924f183ebd5622b7e45 {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.genomic.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.genomic.gdc_realn.bam 11489401406 BAM genomic harmonized CPTAC3 1cb25c23-95ea-4f79-b199-7abc32c21046 022d88a9ca7bb587559a0024cb281340 {"aliquot_tag": "ALQ_4615073", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.S2_L001_R1.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R1_001.fastq.gz 4075314808 FASTQ S2_L001_R1 unaligned CPTAC3 8c397a94-8db3-4dfa-b835-89d7a2222100 3583ad79ae2268aef2173bc54cd9928c {"aliquot_tag": "ALQ_37daf1f1", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.S2_L001_R2.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R2_001.fastq.gz 4378812266 FASTQ S2_L001_R2 unaligned CPTAC3 182ef355-f6af-4b1f-b04b-caeab03bc32a 5067ba6ea9d033dcabe20dd3e23262c2 {"aliquot_tag": "ALQ_37daf1f1", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.S77_R1.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R1_001.fastq.gz 6758181511 FASTQ S77_R1 unaligned CPTAC3 157112b7-746c-4647-b4e6-f4607ce1518d e890f59a04fa43d1d323b629d4035e9a {"aliquot_tag": "ALQ_4615073", "sample": "S77", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.S77_R2.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R2_001.fastq.gz 6923704250 FASTQ S77_R2 unaligned CPTAC3 8f69879b-68a1-45d0-88af-b415dd5148bd b426d4831bfd598d4f225fb3c149569f {"aliquot_tag": "ALQ_4615073", "sample": "S77", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.transcriptome.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.transcriptome.gdc_realn.bam 10503120352 BAM transcriptome harmonized CPTAC3 105ab7e7-dc9b-427c-a7de-349749cd2ef2 952fb5fca4df1aad1fcccf813b5be9fa {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor"} -C3L-02395.RNA-Seq.transcriptome.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.transcriptome.gdc_realn.bam 7326396859 BAM transcriptome harmonized CPTAC3 7e36063a-0967-492c-9456-98cbf1c14370 ee36e2e0c3bf23dab0e6f9101a8a41a9 {"aliquot_tag": "ALQ_4615073", "gdc_sample_type": "Primary Tumor"} -C3L-02395.WGS.N C3L-02395 UCEC WGS blood_normal CPT0128130002 CPT0128130002.WholeGenome.RP-1303.bam 56471729280 BAM aligned CPTAC3 f449d5f8-1089-4e62-be78-9cbb536df35f 216d4747224edf0d3a50c12ca2dc50b9 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal"} -C3L-02395.WGS.N.hg38 C3L-02395 UCEC WGS blood_normal CPT0128130002 853593c3-09dc-4248-8661-55e1babe4789_wgs_gdc_realn.bam 82034365435 BAM harmonized CPTAC3 69c6d886-813e-4eab-8c49-96c206af8d9e 9793c0a23b7d2d18f03b94b899cf5e67 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal"} -C3L-02395.WGS.T C3L-02395 UCEC WGS tumor CPT0128080006 CPT0128080006.WholeGenome.RP-1303.bam 54605121368 BAM aligned CPTAC3 ec2988ee-5692-485e-96a5-691be6001592 cefbd64edc1602445ea4206069927eeb {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor"} -C3L-02395.WGS.T.hg38 C3L-02395 UCEC WGS tumor CPT0128080006 c7f2be82-a75d-4f94-8476-5c2616ca8f44_wgs_gdc_realn.bam 78955859180 BAM harmonized CPTAC3 62ab4487-f909-4cf1-816f-f33a97e129e1 2a8d4f4ce0afdcae14defffca134fe80 {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor"} -C3L-02395.WXS.N C3L-02395 UCEC WXS blood_normal CPT0128130002 CPT0128130002.WholeExome.RP-1303.bam 32685080830 BAM aligned CPTAC3 ef48a9b9-d936-4bfb-b18c-02beee86f517 0e7e33d5de000be62a4acc4e103d8172 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal"} -C3L-02395.WXS.N.hg38 C3L-02395 UCEC WXS blood_normal CPT0128130002 853593c3-09dc-4248-8661-55e1babe4789_wxs_gdc_realn.bam 44142832862 BAM harmonized CPTAC3 9ad17334-4253-4778-999a-43f0f76dee16 e32336112ea8190c4253382b18c599f1 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal"} -C3L-02395.WXS.T C3L-02395 UCEC WXS tumor CPT0128080006 CPT0128080006.WholeExome.RP-1303.bam 43930218015 BAM aligned CPTAC3 f98f4786-5814-4396-8665-e929bbfe2a4f 15289575ec8faf4fabb311e386c33cf6 {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor"} -C3L-02395.WXS.T.hg38 C3L-02395 UCEC WXS tumor CPT0128080006 c7f2be82-a75d-4f94-8476-5c2616ca8f44_wxs_gdc_realn.bam 60285154957 BAM harmonized CPTAC3 c1691a08-375a-42f3-8a93-be32a3bb8cc2 6c3a72673237e3dac1fbd9cd7a0065dc {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor"} -C3L-02399.MethArray.Green.T C3L-02399 UCEC Methylation_Array tumor CPT0171090011 203561620086_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 267de460-4031-4ce0-9c7a-dc7d56f3be43 45991fb25a2eea9fdc612f18ba2f0ae8 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor"} -C3L-02399.MethArray.Red.T C3L-02399 UCEC Methylation_Array tumor CPT0171090011 203561620086_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 25109a5d-a460-4e65-8c7c-2a85896d3523 62f907aea40f374e4ef715f9d01772ff {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor"} -C3L-02399.miRNA-Seq.S6_L003_R1.T C3L-02399 UCEC miRNA-Seq tumor CPT0171090014 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L003_R1_001.unaln.bam 288860503 BAM S6_L003_R1 unaligned CPTAC3 8d3a0cdd-a3df-4fbc-93fc-f4b17d1d46b4 3fcefb5fb9774cb2d523bdd4c985a46b {"aliquot_tag": "ALQ_b068de0a", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02399.miRNA-Seq.T.hg38 C3L-02399 UCEC miRNA-Seq tumor CPT0171090014 805d2ed6-d90b-4ee1-a095-866c1c3ef389_mirnaseq_gdc_realn.bam 327347579 BAM harmonized CPTAC3 cc6a851c-8674-4227-8730-c609358edb58 df0c1304a9659dbdc4678fda3b9d53a6 {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.chimeric.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.chimeric.gdc_realn.bam 40114806 BAM chimeric harmonized CPTAC3 efc06264-ccc1-4dfa-80c7-00009752b6a7 398f47e3b87101ed760c10161a30985d {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.chimeric.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.chimeric.gdc_realn.bam 117106554 BAM chimeric harmonized CPTAC3 99b0e1a1-3af5-41d1-af84-71938a0a2415 2245cedb96732d15cf2a9233b6e05717 {"aliquot_tag": "ALQ_1f55aa10", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.genomic.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.genomic.gdc_realn.bam 9393702873 BAM genomic harmonized CPTAC3 e81e8f6a-df44-4edc-9385-d8eb5dc9c676 1d0af22803b2dad8b2fcce13252b1e02 {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.genomic.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.genomic.gdc_realn.bam 7206822262 BAM genomic harmonized CPTAC3 9a9258f8-6e60-4a4f-abc0-b6e0431af87e 138db439c9ba79bca8bb6489fc1ca362 {"aliquot_tag": "ALQ_1f55aa10", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.S2_L001_R1.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 4398111754 FASTQ S2_L001_R1 unaligned CPTAC3 7308da99-6002-4e45-aeb6-6fd5a77acbf2 a4b52a688c4f8dcfa3d7eff0332e56a8 {"aliquot_tag": "ALQ_b068de0a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.S2_L001_R2.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 5135156175 FASTQ S2_L001_R2 unaligned CPTAC3 927d6c15-eca7-4fe6-ae1a-5477fd5e0a3e be70974896a6cd2dbdaa6e686ce6fefd {"aliquot_tag": "ALQ_b068de0a", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.S32_R1.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R1_001.fastq.gz 3816611577 FASTQ S32_R1 unaligned CPTAC3 51161131-c337-4e75-b7e5-544711e49b17 2a8aa5fca7f09f4e58392e1d76b46727 {"aliquot_tag": "ALQ_1f55aa10", "sample": "S32", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.S32_R2.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R2_001.fastq.gz 3996686135 FASTQ S32_R2 unaligned CPTAC3 09f885ed-ce46-46c6-9e65-0539ce371540 98074fc92adf2a505f151156b1d03042 {"aliquot_tag": "ALQ_1f55aa10", "sample": "S32", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.transcriptome.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.transcriptome.gdc_realn.bam 8997794097 BAM transcriptome harmonized CPTAC3 947ac616-20d6-4de2-9658-73b976991e32 f89d49e288e24bc5bdf077e4f21e5bec {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor"} -C3L-02399.RNA-Seq.transcriptome.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.transcriptome.gdc_realn.bam 2760125566 BAM transcriptome harmonized CPTAC3 6935143f-74ca-4185-b727-b9bf57763620 2bc7acb0a28e3852c895a0d7fe613ecf {"aliquot_tag": "ALQ_1f55aa10", "gdc_sample_type": "Primary Tumor"} -C3L-02399.WGS.N C3L-02399 UCEC WGS blood_normal CPT0171120002 CPT0171120002.WholeGenome.RP-1303.bam 76046504188 BAM aligned CPTAC3 9dfde54b-1c8b-415d-b763-48cfbb298478 3ce5b1f045486273562410d76f9ff41c {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02399.WGS.N.hg38 C3L-02399 UCEC WGS blood_normal CPT0171120002 54efbba4-a6e0-4483-8b65-e5e89c443579_wgs_gdc_realn.bam 111890821546 BAM harmonized CPTAC3 c028d7e5-2439-456c-a58f-d69fc4d89fb2 845d42004f54a259eeae9a6d1ab21225 {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02399.WGS.T C3L-02399 UCEC WGS tumor CPT0171090011 CPT0171090011.WholeGenome.RP-1303.bam 96577309179 BAM aligned CPTAC3 bc6b906b-3f43-4f88-aa27-3c34728618ad efeb44e3d192c300c6e5ef70e77b4063 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor"} -C3L-02399.WGS.T.hg38 C3L-02399 UCEC WGS tumor CPT0171090011 e331d0d8-18dd-47b9-8cf5-11c7cfb1bac7_wgs_gdc_realn.bam 138886672821 BAM harmonized CPTAC3 035edfef-6cfc-406c-b938-dc8052f6b838 0853af48c542828d946461cf43375a09 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor"} -C3L-02399.WXS.N C3L-02399 UCEC WXS blood_normal CPT0171120002 CPT0171120002.WholeExome.RP-1303.bam 21727331308 BAM aligned CPTAC3 5f1fad1f-a63e-4978-8c92-645ce1a7146b e08bd755aaa5c88179ae1bf141e8c441 {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02399.WXS.N.hg38 C3L-02399 UCEC WXS blood_normal CPT0171120002 54efbba4-a6e0-4483-8b65-e5e89c443579_wxs_gdc_realn.bam 29873792399 BAM harmonized CPTAC3 690cd4b5-5d79-4462-9083-4b0266a78f95 fb8a9b6b8db66ca4742aff628e9a17e9 {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02399.WXS.T C3L-02399 UCEC WXS tumor CPT0171090011 CPT0171090011.WholeExome.RP-1303.bam 22653546494 BAM aligned CPTAC3 ee841dfe-c427-45ba-8297-730c08f87f11 8aa92b17ec750275b3df8187e0a135d3 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor"} -C3L-02399.WXS.T.hg38 C3L-02399 UCEC WXS tumor CPT0171090011 e331d0d8-18dd-47b9-8cf5-11c7cfb1bac7_wxs_gdc_realn.bam 31550347331 BAM harmonized CPTAC3 3082ea2d-5d2f-45e8-bf28-71d1b67f017a 06dab7acf8dcb0b0e69210bc68d6f92a {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor"} -C3L-02403.MethArray.Green.T C3L-02403 UCEC Methylation_Array tumor CPT0203150011 203561450014_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c9bad069-94f6-4a4d-b9e6-e38ff3cd895e f5a4e8050a158a4671d7a1631a2550b3 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor"} -C3L-02403.MethArray.Red.T C3L-02403 UCEC Methylation_Array tumor CPT0203150011 203561450014_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 434ea9d3-4e8a-4377-9cdd-fb29cdb343d8 9a7109e2413b56a1e21711a44271b8f3 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor"} -C3L-02403.miRNA-Seq.S13_L003_R1.T C3L-02403 UCEC miRNA-Seq tumor CPT0203150014 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L003_R1_001.unaln.bam 206265894 BAM S13_L003_R1 unaligned CPTAC3 fc8ff9d0-d530-40ed-b772-7a3dd8d8a4a3 b0a2ce9b42c43262ffb45d65684d1019 {"aliquot_tag": "ALQ_1a13c45b", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02403.miRNA-Seq.T.hg38 C3L-02403 UCEC miRNA-Seq tumor CPT0203150014 d73f3409-b1b4-4ed2-af10-b9bb9a584df9_mirnaseq_gdc_realn.bam 234961009 BAM harmonized CPTAC3 80798e8a-36cb-47f3-aecb-f5c266f7afe0 11ec2a2e4d9dd6bd5f64fbb670bb5c0c {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.chimeric.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.chimeric.gdc_realn.bam 40460837 BAM chimeric harmonized CPTAC3 851586a6-f223-4154-89bb-5bede80b719b 4f8e0c7a71082c788ce33b9d7d93791f {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.chimeric.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.chimeric.gdc_realn.bam 169077099 BAM chimeric harmonized CPTAC3 ea66d6ee-56da-4a12-82c6-19e6865431c8 d915d20246ca38387d4b7c2c56673bb9 {"aliquot_tag": "ALQ_9a252f5", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.genomic.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.genomic.gdc_realn.bam 8699816364 BAM genomic harmonized CPTAC3 363dbaeb-cae7-4cd5-ad50-d813261ffb6f 32f8f566622ed861fa4deeccf6be23a4 {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.genomic.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.genomic.gdc_realn.bam 8676218517 BAM genomic harmonized CPTAC3 f9283581-47b1-4801-8886-b41be9324949 f2998cd4d46a8fd33dcfcb55f0d0eb4c {"aliquot_tag": "ALQ_9a252f5", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.S25_L007_R1.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R1_001.fastq.gz 4126823350 FASTQ S25_L007_R1 unaligned CPTAC3 159a7980-cd45-4cd2-b34b-ef50471b0b29 9c9ce43ac4b9fb3e95538418d25af4a3 {"aliquot_tag": "ALQ_1a13c45b", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.S25_L007_R2.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R2_001.fastq.gz 4768518399 FASTQ S25_L007_R2 unaligned CPTAC3 a9f1b062-5ffe-4b1c-b64d-ecb8388cce0c 19551ae313a2db8237dbc47918700438 {"aliquot_tag": "ALQ_1a13c45b", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.S43_R1.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R1_001.fastq.gz 5728380240 FASTQ S43_R1 unaligned CPTAC3 322072b6-7700-48f5-b5ab-3655f509b788 bbc626a61a4336df56f44d6687fa80bf {"aliquot_tag": "ALQ_9a252f5", "sample": "S43", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.S43_R2.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R2_001.fastq.gz 5900956870 FASTQ S43_R2 unaligned CPTAC3 0eee380c-e6dc-431b-84a9-3290f4082b69 7cfcef63e54a57eaa82cbd4880d84be1 {"aliquot_tag": "ALQ_9a252f5", "sample": "S43", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.transcriptome.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.transcriptome.gdc_realn.bam 10155811559 BAM transcriptome harmonized CPTAC3 8d0a6750-24b9-401d-be90-57066d096a4f 81735f02181f6b1b89397379c555c45a {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor"} -C3L-02403.RNA-Seq.transcriptome.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.transcriptome.gdc_realn.bam 6327826848 BAM transcriptome harmonized CPTAC3 f1e1b9ed-1e2a-416c-86e6-4cd5232b396e 80cf92efc502a710082f08c03f9187c7 {"aliquot_tag": "ALQ_9a252f5", "gdc_sample_type": "Primary Tumor"} -C3L-02403.WGS.N C3L-02403 UCEC WGS blood_normal CPT0203210002 CPT0203210002.WholeGenome.RP-1303.bam 65867091611 BAM aligned CPTAC3 babe88b8-503e-49cf-a6cc-c8d3fa20d861 190969da6b268e50f090923d7d184278 {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal"} -C3L-02403.WGS.N.hg38 C3L-02403 UCEC WGS blood_normal CPT0203210002 ad7932ae-f64f-4d35-8b46-0e8bb5d5087f_wgs_gdc_realn.bam 96961690808 BAM harmonized CPTAC3 8d03e946-7b83-45b1-8574-c19c3e952aa5 c9297ad3eec4075546a8f46b763b1107 {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal"} -C3L-02403.WGS.T C3L-02403 UCEC WGS tumor CPT0203150011 CPT0203150011.WholeGenome.RP-1303.bam 63290257237 BAM aligned CPTAC3 d15d41aa-e289-49b0-9e57-3b501838c446 97f38cf586b880703931d0113d51f063 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor"} -C3L-02403.WGS.T.hg38 C3L-02403 UCEC WGS tumor CPT0203150011 a857187f-15f8-49bc-9166-45b3e10ec6c6_wgs_gdc_realn.bam 91363831167 BAM harmonized CPTAC3 39c69f25-cd23-4c3c-9973-786d07c2b55e d252c5a79bfec37051073ca8e7931b27 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor"} -C3L-02403.WXS.N C3L-02403 UCEC WXS blood_normal CPT0203210002 CPT0203210002.WholeExome.RP-1303.bam 21454741557 BAM aligned CPTAC3 8d9ed1d7-4068-41fa-885c-3ffe637986a8 d6170046f69ad9f673c21dc9870374af {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal"} -C3L-02403.WXS.N.hg38 C3L-02403 UCEC WXS blood_normal CPT0203210002 ad7932ae-f64f-4d35-8b46-0e8bb5d5087f_wxs_gdc_realn.bam 29505928192 BAM harmonized CPTAC3 8d04dffd-0af2-4cc3-9e85-858ab4042a2f cd0d755beda86ccad8d89a4ba6209f33 {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal"} -C3L-02403.WXS.T C3L-02403 UCEC WXS tumor CPT0203150011 CPT0203150011.WholeExome.RP-1303.bam 24256457391 BAM aligned CPTAC3 2040dd95-3e88-4462-b8fc-4249a5900629 afce1647e196ddb7caf65257e2574667 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor"} -C3L-02403.WXS.T.hg38 C3L-02403 UCEC WXS tumor CPT0203150011 a857187f-15f8-49bc-9166-45b3e10ec6c6_wxs_gdc_realn.bam 34316268340 BAM harmonized CPTAC3 12a1a4d9-f784-4cc9-8e08-ea386016ba91 1d84af67391f6db82139e3c5b5b069ad {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor"} -C3L-02408.MethArray.Green.T C3L-02408 UCEC Methylation_Array tumor CPT0111720009 203219650177_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b2c769f8-8733-4732-a234-f318afcd74b8 376cac4beae2bbcaa20c2ce97be59c78 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor"} -C3L-02408.MethArray.Red.T C3L-02408 UCEC Methylation_Array tumor CPT0111720009 203219650177_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 2ecd84b4-0d3b-41bd-af88-e92eaa385228 e908796d810d1cbd307e5fee6d533612 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor"} -C3L-02408.miRNA-Seq.A.hg38 C3L-02408 UCEC miRNA-Seq tissue_normal CPT0111740009 3b2a3662-3977-4cbb-827a-7fdc6aa56c1f_mirnaseq_gdc_realn.bam 285241357 BAM harmonized CPTAC3 c6840c6d-3e7c-43d5-98e8-e24f7a123d4e e85f434dce6b12361d5a51ed8eb1d414 {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.miRNA-Seq.S11_L002_R1.T C3L-02408 UCEC miRNA-Seq tumor CPT0111720006 190108_UNC31-K00269_0176_AHYGLVBBXX_GGCTAC_S11_L002_R1_001.unaln.bam 247052897 BAM S11_L002_R1 unaligned CPTAC3 1f25db7e-0018-481d-b9be-b2881849bcc5 4b2ac11fbf66fd2a2a45ddb21667c3bc {"aliquot_tag": "ALQ_ebc78649", "sample": "S11", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02408.miRNA-Seq.S8_L004_R1.A C3L-02408 UCEC miRNA-Seq tissue_normal CPT0111740009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L004_R1_001.unaln.bam 246145605 BAM S8_L004_R1 unaligned CPTAC3 4c2f1a81-18eb-4a8a-9d1a-8152233d7e7f 39ee70ae2ad95ff11ce42f9c3b706ae5 {"aliquot_tag": "ALQ_f4386e78", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.miRNA-Seq.T.hg38 C3L-02408 UCEC miRNA-Seq tumor CPT0111720006 9b4b0a82-9325-4b9c-9be2-9b353cfcd4e8_mirnaseq_gdc_realn.bam 272785696 BAM harmonized CPTAC3 9b9ff7bf-67d7-42e3-af98-86c475e35f24 ed16929e119f17a3102b1d7ac568d559 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.chimeric.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.chimeric.gdc_realn.bam 35258140 BAM chimeric harmonized CPTAC3 ad1c8ff8-5b90-48ab-ad75-0d1d4651db8f df175658b65c1d3c7eaa0b336bbc447f {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.RNA-Seq.chimeric.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.chimeric.gdc_realn.bam 30316723 BAM chimeric harmonized CPTAC3 849b22d8-817b-475e-8e7b-acb7f4eaa82b 6f3b3af744fe33cff443808e0635e465 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.chimeric.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.chimeric.gdc_realn.bam 227827841 BAM chimeric harmonized CPTAC3 66591ef6-3235-4a80-8d06-a66c834f4d42 c0f276f3e9aac32433ce5a545eae22a0 {"aliquot_tag": "ALQ_6ea8e6a3", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.genomic.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.genomic.gdc_realn.bam 9136206198 BAM genomic harmonized CPTAC3 7fadfbc5-e316-45a1-82bd-d9fca3f0f75d e346aaa7a58ba2cb43d05ca893e9c1b0 {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.RNA-Seq.genomic.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.genomic.gdc_realn.bam 8919243947 BAM genomic harmonized CPTAC3 36f9ecd0-7160-41f0-8f44-84e923447e6c 2dd5ae6df8fdef8ebff6cc05bf80ecf1 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.genomic.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.genomic.gdc_realn.bam 13080026970 BAM genomic harmonized CPTAC3 2868cac3-8dc2-4ccb-9fb6-971506855b08 f0e222872fcf39a00a2b05f10af0e1a8 {"aliquot_tag": "ALQ_6ea8e6a3", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.S18_R1.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R1_001.fastq.gz 7861943248 FASTQ S18_R1 unaligned CPTAC3 6645664b-2f76-4807-a84c-808e824062b4 32b3dc424bd7224ffa0f79a51c99f097 {"aliquot_tag": "ALQ_6ea8e6a3", "sample": "S18", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.S18_R2.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R2_001.fastq.gz 8126142883 FASTQ S18_R2 unaligned CPTAC3 b09c5e8a-24d0-4060-bfd6-53fd3c01d2cd 889176ce4ceac70ab13b630e0e1592ce {"aliquot_tag": "ALQ_6ea8e6a3", "sample": "S18", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.S8_L008_R1.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3618134131 FASTQ S8_L008_R1 unaligned CPTAC3 2b713127-596d-41f7-8332-764d2378b685 5086606664dd285b90ba559759a99bf9 {"aliquot_tag": "ALQ_f4386e78", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.RNA-Seq.S8_L008_R1.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3943217924 FASTQ S8_L008_R1 unaligned CPTAC3 56d41787-3417-42a0-acae-f42e2f41e9ff 61841d7237e447c6cd811af52c775a0a {"aliquot_tag": "ALQ_ebc78649", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.S8_L008_R2.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R2_001.fastq.gz 3799526666 FASTQ S8_L008_R2 unaligned CPTAC3 a3616b7f-20e4-420b-91ce-cb3e5ba405a1 bffe0c2619d87a4901b76a18770467dc {"aliquot_tag": "ALQ_f4386e78", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.RNA-Seq.S8_L008_R2.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 4537821882 FASTQ S8_L008_R2 unaligned CPTAC3 ff70f9a0-0fc2-4619-83c6-43d206e6ce66 7420cb8f48b7a89b81c0cf1a070f3095 {"aliquot_tag": "ALQ_ebc78649", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.transcriptome.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.transcriptome.gdc_realn.bam 10744070449 BAM transcriptome harmonized CPTAC3 2d5f34df-2580-4031-bb8e-8dc8531796b3 bfc822a6dd54a4c12f9aab33dfa9be75 {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.RNA-Seq.transcriptome.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.transcriptome.gdc_realn.bam 10678032368 BAM transcriptome harmonized CPTAC3 d3021dee-b7e0-49ee-899c-9ab242523c47 d53acc6cefda4c4140f73efec9b84923 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor"} -C3L-02408.RNA-Seq.transcriptome.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.transcriptome.gdc_realn.bam 8509813235 BAM transcriptome harmonized CPTAC3 aeb9cf46-05a2-40af-87a4-8a03794842d4 681ee66d3a6b4198b1a7ee1647bf55f1 {"aliquot_tag": "ALQ_6ea8e6a3", "gdc_sample_type": "Primary Tumor"} -C3L-02408.WGS.A C3L-02408 UCEC WGS tissue_normal CPT0111740006 CPT0111740006.WholeGenome.RP-1303.bam 56165100135 BAM aligned CPTAC3 bfb17cc4-9414-40d8-a474-b6e54a900ee0 4eb58c12a3773c57412bd4569f10b351 {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.WGS.A.hg38 C3L-02408 UCEC WGS tissue_normal CPT0111740006 7d3d60f8-567d-4d86-a1de-d81ef50070fe_wgs_gdc_realn.bam 82005546972 BAM harmonized CPTAC3 3f19116c-0210-40ac-b732-757527a5dffc 08c1fd033bd108a8279b45df9f09b89c {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.WGS.N C3L-02408 UCEC WGS blood_normal CPT0112800002 CPT0112800002.WholeGenome.RP-1303.bam 58626542745 BAM aligned CPTAC3 59284f6e-0390-4e7a-82a4-8aabff1fe604 0584f787a6cfe4b64b4199b5cd473d4b {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal"} -C3L-02408.WGS.N.hg38 C3L-02408 UCEC WGS blood_normal CPT0112800002 0cd0a614-c905-4945-ae49-8c107c22f762_wgs_gdc_realn.bam 85139358096 BAM harmonized CPTAC3 5f6b08b5-1ea4-46c8-bd06-cc9f71f063d8 633219ad1e1d794260dfc1748809a537 {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal"} -C3L-02408.WGS.T C3L-02408 UCEC WGS tumor CPT0111720009 CPT0111720009.WholeGenome.RP-1303.bam 61706663969 BAM aligned CPTAC3 a626e735-331f-4d11-abc9-9c8b7d5cdf39 854f372091f4ca8e6a8041fdd999ccf4 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor"} -C3L-02408.WGS.T.hg38 C3L-02408 UCEC WGS tumor CPT0111720009 655e2375-fe5a-4021-a349-8a352f35b623_wgs_gdc_realn.bam 90554360259 BAM harmonized CPTAC3 a84aa901-0853-446e-812a-9ddee6c9b4c7 0107e01b0935754291691ecde2fcc8dc {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor"} -C3L-02408.WXS.A C3L-02408 UCEC WXS tissue_normal CPT0111740006 CPT0111740006.WholeExome.RP-1303.bam 19235218483 BAM aligned CPTAC3 a643fe16-2e89-40ce-b3bb-ce972789d850 2c5b1481d485d1a8c283aa00e42bef22 {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.WXS.A.hg38 C3L-02408 UCEC WXS tissue_normal CPT0111740006 7d3d60f8-567d-4d86-a1de-d81ef50070fe_wxs_gdc_realn.bam 26015735552 BAM harmonized CPTAC3 86477a87-a191-4799-99b8-ebca39e22f29 8924a46409734917f2b4146e5d56174d {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02408.WXS.N C3L-02408 UCEC WXS blood_normal CPT0112800002 CPT0112800002.WholeExome.RP-1303.bam 20569111983 BAM aligned CPTAC3 7982dae4-6c78-4e8a-99de-8d50cd615132 e1933c21ac9326a25e4f021f2e2d1297 {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal"} -C3L-02408.WXS.N.hg38 C3L-02408 UCEC WXS blood_normal CPT0112800002 0cd0a614-c905-4945-ae49-8c107c22f762_wxs_gdc_realn.bam 28442102980 BAM harmonized CPTAC3 ae484f40-76e3-48d3-8c9c-ff676e193b71 42fa6a796937f3276bacbcc1423fee3b {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal"} -C3L-02408.WXS.T C3L-02408 UCEC WXS tumor CPT0111720009 CPT0111720009.WholeExome.RP-1303.bam 26277032867 BAM aligned CPTAC3 89970299-c3a3-4726-a975-a6784ffb71c4 87840b8c149bcecbb0bc934fff3ff5f2 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor"} -C3L-02408.WXS.T.hg38 C3L-02408 UCEC WXS tumor CPT0111720009 655e2375-fe5a-4021-a349-8a352f35b623_wxs_gdc_realn.bam 36158977342 BAM harmonized CPTAC3 f2fe9eb9-8d33-4bbd-b7ce-0ffc2f3ad648 58e89055a175495a942e7b27c1bd3c81 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor"} -C3L-02409.MethArray.Green.T C3L-02409 UCEC Methylation_Array tumor CPT0111810009 203219650165_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bb2f7257-ebe1-4e4e-8c3d-28011b52af50 946b5b0c830bd6a28f81693fd0045964 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor"} -C3L-02409.MethArray.Red.T C3L-02409 UCEC Methylation_Array tumor CPT0111810009 203219650165_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 ccfd0e86-e27f-4480-88de-24d4da202efc 01322420b513b960fd8738c33e7d875a {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor"} -C3L-02409.miRNA-Seq.A.hg38 C3L-02409 UCEC miRNA-Seq tissue_normal CPT0111820009 dd92407f-a8aa-4de3-b758-19350a43aad1_mirnaseq_gdc_realn.bam 299281832 BAM harmonized CPTAC3 84dec196-be4e-4c45-b168-785e6da4a50a ab18648ea1b01ab8451bc6b6bba5e5ec {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.miRNA-Seq.S12_L002_R1.T C3L-02409 UCEC miRNA-Seq tumor CPT0111810006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTTGTA_S12_L002_R1_001.unaln.bam 203584817 BAM S12_L002_R1 unaligned CPTAC3 7644ad3a-96a6-4608-8165-5da3a9f79ef0 74e4eb6c8710caebe943de295bc1fca1 {"aliquot_tag": "ALQ_5d314e4c", "sample": "S12", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02409.miRNA-Seq.S9_L004_R1.A C3L-02409 UCEC miRNA-Seq tissue_normal CPT0111820009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L004_R1_001.unaln.bam 264939839 BAM S9_L004_R1 unaligned CPTAC3 27fd4093-c047-44b7-83ab-b1bf8f6b6b5c cb3ef79e4465e2c31a3080c6314e3171 {"aliquot_tag": "ALQ_8a2e290d", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.miRNA-Seq.T.hg38 C3L-02409 UCEC miRNA-Seq tumor CPT0111810006 d8d0c5af-a161-452b-ab47-3cd11cbe522b_mirnaseq_gdc_realn.bam 217918353 BAM harmonized CPTAC3 e01168e9-b88a-48b8-96a0-8cfd484b19e4 d5990463aebfdb9e9e261040baa01e4c {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.chimeric.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.chimeric.gdc_realn.bam 36090068 BAM chimeric harmonized CPTAC3 05fbbf01-662c-4bac-973d-70b3947a2ab7 7f9c43b2f9819f57fbca3386e78122a0 {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.RNA-Seq.chimeric.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.chimeric.gdc_realn.bam 29753999 BAM chimeric harmonized CPTAC3 625dfd06-8efa-49e5-8ee4-9def5f37cfe2 ef55f50cad2d14f01a88e36c3f114c06 {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.chimeric.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.chimeric.gdc_realn.bam 242247672 BAM chimeric harmonized CPTAC3 f98e322a-6378-4686-a661-5dba1a475f9a 68b1dd727f291113f02d9bb6dbad3f90 {"aliquot_tag": "ALQ_17d4e916", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.genomic.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.genomic.gdc_realn.bam 8834215564 BAM genomic harmonized CPTAC3 619d06a4-42a8-45d8-912b-093e7a30b5a9 178d2c91172c70c5878402bfbd04ef90 {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.RNA-Seq.genomic.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.genomic.gdc_realn.bam 8720182377 BAM genomic harmonized CPTAC3 77096f1d-5c87-4667-bfd6-55ff1966c8f4 d70b0d40e17edecd050bf579dff4b2b8 {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.genomic.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.genomic.gdc_realn.bam 10919686737 BAM genomic harmonized CPTAC3 c0af9993-8eb8-49b4-a234-b5b31b5942c9 5bb81e341110ad84fde3ca9f4e7c095d {"aliquot_tag": "ALQ_17d4e916", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.S28_R1.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R1_001.fastq.gz 6340904547 FASTQ S28_R1 unaligned CPTAC3 d1ea33e3-bac8-4f9f-88a6-f8e52b025eac 15bfdb7e78a790516621de8d431701ab {"aliquot_tag": "ALQ_17d4e916", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.S28_R2.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R2_001.fastq.gz 6447997136 FASTQ S28_R2 unaligned CPTAC3 cdc1227c-1b1d-4fc4-96dd-4b8493d74aa5 b37fd4f8c81de347fa4e2dd0e7d38817 {"aliquot_tag": "ALQ_17d4e916", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.S7_L008_R1.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3460482013 FASTQ S7_L008_R1 unaligned CPTAC3 a6927022-909e-40cc-b062-2b7392ddf701 e7ebc590132dec146a60ab69bbe25b8d {"aliquot_tag": "ALQ_8a2e290d", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.RNA-Seq.S7_L008_R1.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R1_001.fastq.gz 3865691702 FASTQ S7_L008_R1 unaligned CPTAC3 14bb434c-51e3-453e-aad4-44249dd90ed5 6dbc631db9cddb8f3ef7b1bae55561f3 {"aliquot_tag": "ALQ_5d314e4c", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.S7_L008_R2.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3620868710 FASTQ S7_L008_R2 unaligned CPTAC3 43b350af-96f0-492c-9983-23ccd7366854 5d81550115c45a554bed47dd67620b70 {"aliquot_tag": "ALQ_8a2e290d", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.RNA-Seq.S7_L008_R2.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R2_001.fastq.gz 4323666753 FASTQ S7_L008_R2 unaligned CPTAC3 c024635f-5f2c-4144-9f96-b84ef4df26d1 b7f117f411f1da61ce6365e7af099126 {"aliquot_tag": "ALQ_5d314e4c", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.transcriptome.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.transcriptome.gdc_realn.bam 8531590868 BAM transcriptome harmonized CPTAC3 74aa7b99-a47d-45b6-add5-d7ee5aa6a673 6fdefb86ed91186f3b46abbeef1c385c {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.RNA-Seq.transcriptome.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.transcriptome.gdc_realn.bam 11802762544 BAM transcriptome harmonized CPTAC3 99116155-3616-4354-b28f-d91018d426ec 6fc7ef043e5b87b568be0f587b8540c3 {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor"} -C3L-02409.RNA-Seq.transcriptome.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.transcriptome.gdc_realn.bam 5960996971 BAM transcriptome harmonized CPTAC3 043aefd7-2a08-41a2-80e1-97058e5354ce 8786eb200ef3071b2c46e5f3ef2e38b9 {"aliquot_tag": "ALQ_17d4e916", "gdc_sample_type": "Primary Tumor"} -C3L-02409.WGS.N C3L-02409 UCEC WGS blood_normal CPT0112820002 CPT0112820002.WholeGenome.RP-1303.bam 64903962064 BAM aligned CPTAC3 1f3bf291-08cd-4532-b76a-d0ca9bdc64e8 04bad01d7ababb29297c745e26a44990 {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal"} -C3L-02409.WGS.N.hg38 C3L-02409 UCEC WGS blood_normal CPT0112820002 81896c68-aa31-46a4-97ac-71439743c2b8_wgs_gdc_realn.bam 93217125448 BAM harmonized CPTAC3 a8c88020-9768-406c-9fcb-a6e650f5a0dd 1232d3d9d6f2e2fa61be258319fba9da {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal"} -C3L-02409.WGS.T C3L-02409 UCEC WGS tumor CPT0111810009 CPT0111810009.WholeGenome.RP-1303.bam 67103423453 BAM aligned CPTAC3 9edf8734-5466-401d-abe2-2f40ee23ba0a 2895a0d5cafeea41c49e11fc2fadd5d6 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor"} -C3L-02409.WGS.T.hg38 C3L-02409 UCEC WGS tumor CPT0111810009 04c74c12-fbda-4ba9-9f78-5189321f0aec_wgs_gdc_realn.bam 97998023969 BAM harmonized CPTAC3 1638e1c4-0a38-4590-a34c-4ffeeda9e934 687e5ac370961946225d11fd78d0184b {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor"} -C3L-02409.WXS.A C3L-02409 UCEC WXS tissue_normal CPT0111820006 CPT0111820006.WholeExome.RP-1303.bam 18464429480 BAM aligned CPTAC3 f80e9beb-d1af-4bdb-a545-4254eee08ea4 396428c1e24e5f09b2752ed1418f3109 {"aliquot_tag": "ALQ_1a91349c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.WXS.A.hg38 C3L-02409 UCEC WXS tissue_normal CPT0111820006 dad926bf-7027-41c8-9822-5e8bf01ff928_wxs_gdc_realn.bam 25416697141 BAM harmonized CPTAC3 0056121d-5830-43a2-8be5-bd6dd0d8a7a3 ec47074b81eb7073b3cb6fb09b72dd21 {"aliquot_tag": "ALQ_1a91349c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02409.WXS.N C3L-02409 UCEC WXS blood_normal CPT0112820002 CPT0112820002.WholeExome.RP-1303.bam 24611748363 BAM aligned CPTAC3 221ee817-1ac5-4308-9a13-4dcf6800773a c577852ec3bf59558c632e5907c39d09 {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal"} -C3L-02409.WXS.N.hg38 C3L-02409 UCEC WXS blood_normal CPT0112820002 81896c68-aa31-46a4-97ac-71439743c2b8_wxs_gdc_realn.bam 34410247499 BAM harmonized CPTAC3 e941a2c3-92d9-4d5e-b09e-1b9fd24dbb76 856d8576f85c6624eac3e293cfd925e5 {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal"} -C3L-02409.WXS.T C3L-02409 UCEC WXS tumor CPT0111810009 CPT0111810009.WholeExome.RP-1303.bam 20908122178 BAM aligned CPTAC3 4e092979-1313-4795-99b9-a82b6dfa3dac 0e3c92ec3b2b0f5e0614dda23e12e0a4 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor"} -C3L-02409.WXS.T.hg38 C3L-02409 UCEC WXS tumor CPT0111810009 04c74c12-fbda-4ba9-9f78-5189321f0aec_wxs_gdc_realn.bam 29051184108 BAM harmonized CPTAC3 f0fa081b-841f-455f-bb85-2c538405ba5a 7f6f81be8b26eb3571d54faa97ce1337 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor"} -C3L-02411.MethArray.Green.T C3L-02411 UCEC Methylation_Array tumor CPT0111880009 203220070217_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 10cada16-1bd2-47af-b60f-5cfc0a76a92d 6d947b47036cfa7894319831e15e16ec {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor"} -C3L-02411.MethArray.Red.T C3L-02411 UCEC Methylation_Array tumor CPT0111880009 203220070217_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5d81d677-f22a-454b-9685-4a7f92a4a649 394056e99b8fee529da1a1320395f4cf {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor"} -C3L-02411.miRNA-Seq.S13_L002_R1.T C3L-02411 UCEC miRNA-Seq tumor CPT0111880006 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTCAA_S13_L002_R1_001.unaln.bam 211023200 BAM S13_L002_R1 unaligned CPTAC3 ebceb14e-0cc3-4493-90e2-41d4b1efad41 d921cfb5ea36b361f9d55f8f305aa227 {"aliquot_tag": "ALQ_50212c3d", "sample": "S13", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02411.miRNA-Seq.T.hg38 C3L-02411 UCEC miRNA-Seq tumor CPT0111880006 721e79c8-cb84-4b8b-8cf7-2607b872d9f0_mirnaseq_gdc_realn.bam 234113888 BAM harmonized CPTAC3 1c90d873-1357-4d29-946d-98458cd7ffb3 c62c8bdf2c20cb347fbbcdbb60f692cb {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.chimeric.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.chimeric.gdc_realn.bam 27415178 BAM chimeric harmonized CPTAC3 8c841a9e-38bb-4cbc-9ef7-18bc265ddf15 fc143f385a004e01c67c6c16e1cce3d2 {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.chimeric.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.chimeric.gdc_realn.bam 230554674 BAM chimeric harmonized CPTAC3 5311c4f0-4053-4635-9cda-cc20db7fe101 0ccb010c5c399e0acd9969b7538d8412 {"aliquot_tag": "ALQ_df346666", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.genomic.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.genomic.gdc_realn.bam 7402513598 BAM genomic harmonized CPTAC3 a96c740b-bcca-4df0-9835-25d9c7fe57cc 454598b53a072e20cb829593f2719335 {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.genomic.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.genomic.gdc_realn.bam 12859994243 BAM genomic harmonized CPTAC3 94e6e333-0065-4571-bf25-023adb7ca5a5 f9a9e82c862fd276016daa54885cb54d {"aliquot_tag": "ALQ_df346666", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.S3_L007_R1.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R1_001.fastq.gz 3308226370 FASTQ S3_L007_R1 unaligned CPTAC3 f774f09c-dc3a-4bc7-a507-e60277660a00 04438c14b305929f18ea8093144c6b00 {"aliquot_tag": "ALQ_50212c3d", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.S3_L007_R2.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R2_001.fastq.gz 3587709068 FASTQ S3_L007_R2 unaligned CPTAC3 4a5b8233-dfb8-4b8d-822d-e58724ec646b 182e491cac01607b175fb7ce05ff4312 {"aliquot_tag": "ALQ_50212c3d", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.S57_R1.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R1_001.fastq.gz 7929005404 FASTQ S57_R1 unaligned CPTAC3 7a2313e3-793e-4f7a-a581-b9c04114be26 cf432f857c3a765ee07d1843ede0b28e {"aliquot_tag": "ALQ_df346666", "sample": "S57", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.S57_R2.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R2_001.fastq.gz 8280240762 FASTQ S57_R2 unaligned CPTAC3 6be38c27-c7f8-40b5-82b3-44acc244e085 ec6649e52ed45247d463873624cddec9 {"aliquot_tag": "ALQ_df346666", "sample": "S57", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.transcriptome.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.transcriptome.gdc_realn.bam 9883721495 BAM transcriptome harmonized CPTAC3 4ac79bcb-8014-432c-840c-1dddd2ab14d8 f1c0baa65bf59e69587964e41823c258 {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor"} -C3L-02411.RNA-Seq.transcriptome.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.transcriptome.gdc_realn.bam 9381247173 BAM transcriptome harmonized CPTAC3 9bfd106b-804a-4f2c-9240-e63e332dd4c1 73bdb37a9f343804936851ec71b9683b {"aliquot_tag": "ALQ_df346666", "gdc_sample_type": "Primary Tumor"} -C3L-02411.WGS.N C3L-02411 UCEC WGS blood_normal CPT0112840002 CPT0112840002.WholeGenome.RP-1303.bam 56837803305 BAM aligned CPTAC3 2f3171e9-9ca1-4db2-9fbe-2b375c4ad031 cded913ad5928621aafaa7f9483ca28d {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02411.WGS.N.hg38 C3L-02411 UCEC WGS blood_normal CPT0112840002 aff3933b-05f9-4d3c-bb1f-bfac8b2df77b_wgs_gdc_realn.bam 81671795192 BAM harmonized CPTAC3 2d2cffc0-a786-409c-a71c-6bad1a8c1c59 28203a98e5c8bf7c3b1fd833e8ff61bc {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02411.WGS.T C3L-02411 UCEC WGS tumor CPT0111880009 CPT0111880009.WholeGenome.RP-1303.bam 52194051926 BAM aligned CPTAC3 aebc393b-8b69-471d-ada4-64c8c9242810 c3750372f34c7d5a4e6dcefadbf57145 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor"} -C3L-02411.WGS.T.hg38 C3L-02411 UCEC WGS tumor CPT0111880009 d119882d-6840-4288-9601-49fe5cad97b2_wgs_gdc_realn.bam 75819720550 BAM harmonized CPTAC3 fa7217f1-977a-4be9-a7eb-e74929ef8fa8 607e710a704e75ae80c68b416e3dece6 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor"} -C3L-02411.WXS.N C3L-02411 UCEC WXS blood_normal CPT0112840002 CPT0112840002.WholeExome.RP-1303.bam 26590057955 BAM aligned CPTAC3 6e0b00d7-3515-4a4c-905b-3422b8543ad6 4b072ecb63098d4815565340a1a88911 {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02411.WXS.N.hg38 C3L-02411 UCEC WXS blood_normal CPT0112840002 aff3933b-05f9-4d3c-bb1f-bfac8b2df77b_wxs_gdc_realn.bam 36563447135 BAM harmonized CPTAC3 6622cb56-93ff-4d11-9da4-9d529f462762 9af2ae8931b3bd199dc4dff3f16e7518 {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02411.WXS.T C3L-02411 UCEC WXS tumor CPT0111880009 CPT0111880009.WholeExome.RP-1303.bam 28317529386 BAM aligned CPTAC3 36646bff-7b2d-4431-a0b2-e1911bc50a06 ee7feba3bc48c88c0d3677bb52fe4f24 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor"} -C3L-02411.WXS.T.hg38 C3L-02411 UCEC WXS tumor CPT0111880009 d119882d-6840-4288-9601-49fe5cad97b2_wxs_gdc_realn.bam 38303810974 BAM harmonized CPTAC3 407fe980-82a5-47e8-ab24-1fdd2c98e0f0 a7a2d246ab0d22653bbc1f7e0e4647d6 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor"} -C3L-02412.MethArray.Green.T C3L-02412 UCEC Methylation_Array tumor CPT0111950009 203219760081_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ecab69fb-5e87-49b4-839f-50b1b574b175 e24b1ac1f48161f56f180a931da73725 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor"} -C3L-02412.MethArray.Red.T C3L-02412 UCEC Methylation_Array tumor CPT0111950009 203219760081_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 b909aef4-7ec9-4b1f-8299-eb3f93f635cd 9ddca45818ab23d5e499538207618b46 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor"} -C3L-02412.miRNA-Seq.A.hg38 C3L-02412 UCEC miRNA-Seq tissue_normal CPT0111980007 d6ab8ebf-e794-45c4-8667-7de5951f2e26_mirnaseq_gdc_realn.bam 253964770 BAM harmonized CPTAC3 f8809677-eac1-4734-b9e4-976591c19816 9ed5284566d0f9a348d100241ada0087 {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.miRNA-Seq.S12_L004_R1.A C3L-02412 UCEC miRNA-Seq tissue_normal CPT0111980007 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L004_R1_001.unaln.bam 220223630 BAM S12_L004_R1 unaligned CPTAC3 5af3e6e7-f857-4828-a219-9f38ce7d6ece 11d9b9a63de9cd311b39cd71807e2d2a {"aliquot_tag": "ALQ_ec7acf0e", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.miRNA-Seq.S14_L002_R1.T C3L-02412 UCEC miRNA-Seq tumor CPT0111950006 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTTCC_S14_L002_R1_001.unaln.bam 182653593 BAM S14_L002_R1 unaligned CPTAC3 3dfd218d-72fe-4b7f-a63c-c4ece52ce672 fc88930fa8de091d5f009603b113c6db {"aliquot_tag": "ALQ_63ed3b29", "sample": "S14", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02412.miRNA-Seq.T.hg38 C3L-02412 UCEC miRNA-Seq tumor CPT0111950006 213aef35-67f9-4131-b30e-9c1b248d7947_mirnaseq_gdc_realn.bam 197276799 BAM harmonized CPTAC3 eb83bde6-0048-4f92-b906-3516dc5c331b d45747ccbe887f86dcc795a6004d751b {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.chimeric.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.chimeric.gdc_realn.bam 40394096 BAM chimeric harmonized CPTAC3 b431ec42-30a3-4a30-8912-7e908db0480a 963e28326d38f30d5b85d7586e4fad4c {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.RNA-Seq.chimeric.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.chimeric.gdc_realn.bam 29381630 BAM chimeric harmonized CPTAC3 415c87f5-82d0-4b9f-aece-cf450ab9df1f 206d319f048edb44d7aa35d41870555c {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.chimeric.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.chimeric.gdc_realn.bam 165662012 BAM chimeric harmonized CPTAC3 fca1478c-7f0a-4b2e-a0fc-7ef4db452203 bac97f7ddd495366de149d355b7b4e87 {"aliquot_tag": "ALQ_98941cb6", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.genomic.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.genomic.gdc_realn.bam 9650787722 BAM genomic harmonized CPTAC3 88970bd0-5bce-4bdd-80c5-dbafec510bfe 432e584388cdc65c2ae5a1f317ced544 {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.RNA-Seq.genomic.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.genomic.gdc_realn.bam 8847890041 BAM genomic harmonized CPTAC3 1a8e4422-6f59-418e-ba19-18bf489bb574 75b8dc8e7a68fe6698b24ff7b26082c9 {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.genomic.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.genomic.gdc_realn.bam 7516544451 BAM genomic harmonized CPTAC3 690ccae0-4335-465b-ba62-1a0b005bea31 96f645d9c5a36bc07a0af15c0130475d {"aliquot_tag": "ALQ_98941cb6", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.S1_L001_R1.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3808109443 FASTQ S1_L001_R1 unaligned CPTAC3 e05c93fc-1e4f-4d51-82a7-58c01816a142 e13d76c2755fe46e1a3732d5027606af {"aliquot_tag": "ALQ_ec7acf0e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.RNA-Seq.S1_L001_R2.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4250017479 FASTQ S1_L001_R2 unaligned CPTAC3 5f1eae01-e250-4622-8fff-f3d8212dcd83 2fdea067e408b8f17364dbd520427f14 {"aliquot_tag": "ALQ_ec7acf0e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.RNA-Seq.S2_L007_R1.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R1_001.fastq.gz 4005521705 FASTQ S2_L007_R1 unaligned CPTAC3 9e02b72f-5d15-4ebd-ad2d-d90b9cfca76a 673eafb024120c44e529b8a93819edfc {"aliquot_tag": "ALQ_63ed3b29", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.S2_L007_R2.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R2_001.fastq.gz 4333965191 FASTQ S2_L007_R2 unaligned CPTAC3 e52c832f-62e8-4c01-b6f9-6146fff0feb9 221bed5bb5484454d6352c120038cb70 {"aliquot_tag": "ALQ_63ed3b29", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.S65_R1.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R1_001.fastq.gz 4283516048 FASTQ S65_R1 unaligned CPTAC3 bafdfc8b-5a57-4e55-9cbc-19dc6acc211e e5e5c24efba3fd9e2f8ab67cc35e154a {"aliquot_tag": "ALQ_98941cb6", "sample": "S65", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.S65_R2.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R2_001.fastq.gz 4395270888 FASTQ S65_R2 unaligned CPTAC3 42caf0f7-a0ee-4535-81eb-f4dd7191aa32 2ac40f59a562764c69c889d84c4da635 {"aliquot_tag": "ALQ_98941cb6", "sample": "S65", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.transcriptome.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.transcriptome.gdc_realn.bam 10846678957 BAM transcriptome harmonized CPTAC3 a8d9f155-1162-4d30-9c7b-4ef638ecf491 d2a1dfdee628ba36bf3260f7feda5924 {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.RNA-Seq.transcriptome.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.transcriptome.gdc_realn.bam 11929627883 BAM transcriptome harmonized CPTAC3 44ac63d5-f956-4a4a-aa35-86388f484e72 addce7d06f6767fda02b052f3ab26acb {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor"} -C3L-02412.RNA-Seq.transcriptome.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.transcriptome.gdc_realn.bam 3703108006 BAM transcriptome harmonized CPTAC3 c84becf0-6c77-4c2e-aa70-e75161b97760 5d868be0b794b20405b933bbd8676dfc {"aliquot_tag": "ALQ_98941cb6", "gdc_sample_type": "Primary Tumor"} -C3L-02412.WGS.A C3L-02412 UCEC WGS tissue_normal CPT0111980005 CPT0111980005.WholeGenome.RP-1303.bam 67748347674 BAM aligned CPTAC3 bf9f82e8-b854-452c-9058-a0fb938323fb aff47e2bfa9f5486faa23edcf7c5eebe {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.WGS.A.hg38 C3L-02412 UCEC WGS tissue_normal CPT0111980005 632fbad2-42a4-4e6b-a489-dcf2cebc65ec_wgs_gdc_realn.bam 101356886901 BAM harmonized CPTAC3 27377076-3b25-4052-9dcf-ae13a93bee25 0302bc12eaa0ff9695d18cd722c84da5 {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.WGS.N C3L-02412 UCEC WGS blood_normal CPT0112860002 CPT0112860002.WholeGenome.RP-1303.bam 58061618568 BAM aligned CPTAC3 4052fdc6-93a6-43fa-ac5b-21b6c5a0b1a4 f506509da25dbd73deaa0511cc9503d8 {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02412.WGS.N.hg38 C3L-02412 UCEC WGS blood_normal CPT0112860002 e1768f22-93ea-4116-9b32-85fc11664036_wgs_gdc_realn.bam 86055460185 BAM harmonized CPTAC3 b62ded29-1460-45b9-8c2a-d55d36f48a75 1d5632e99549f5e514f46f13d82f08b0 {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02412.WGS.T C3L-02412 UCEC WGS tumor CPT0111950009 CPT0111950009.WholeGenome.RP-1303.bam 60326824703 BAM aligned CPTAC3 d3c6701e-8535-45b6-95d8-c125032440cf dd638e9e1dc6533ee9b8bc88dd8c2a69 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor"} -C3L-02412.WGS.T.hg38 C3L-02412 UCEC WGS tumor CPT0111950009 c6136e6f-066c-4436-ac0f-3890c4f7c0d0_wgs_gdc_realn.bam 88585676347 BAM harmonized CPTAC3 0b0b1249-770b-444d-9068-5d8727b14411 a5a93886bc60da9a1b09203df0619072 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor"} -C3L-02412.WXS.A C3L-02412 UCEC WXS tissue_normal CPT0111980005 CPT0111980005.WholeExome.RP-1303.bam 25585128702 BAM aligned CPTAC3 8c8908de-bd1e-4402-b08e-0fc11e1599f2 e826525fc103d33847497657ddd1866d {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.WXS.A.hg38 C3L-02412 UCEC WXS tissue_normal CPT0111980005 632fbad2-42a4-4e6b-a489-dcf2cebc65ec_wxs_gdc_realn.bam 35422339614 BAM harmonized CPTAC3 4178b5d7-daaa-43ce-84b0-097e6ff71723 2d3523d1c96ed657df0fba98f164b009 {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02412.WXS.N C3L-02412 UCEC WXS blood_normal CPT0112860002 CPT0112860002.WholeExome.RP-1303.bam 26246588179 BAM aligned CPTAC3 267af51e-0e6a-4092-930d-2d0ac36b3ffa 0c467ee85f53b651bc4e20457d087586 {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02412.WXS.N.hg38 C3L-02412 UCEC WXS blood_normal CPT0112860002 e1768f22-93ea-4116-9b32-85fc11664036_wxs_gdc_realn.bam 36624146300 BAM harmonized CPTAC3 be05cdfe-ae4b-46dd-82fb-8b53d66ed75c 78912c7e084d9a41f71bac816f66b2fa {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02412.WXS.T C3L-02412 UCEC WXS tumor CPT0111950009 CPT0111950009.WholeExome.RP-1303.bam 22750931371 BAM aligned CPTAC3 9305fad6-adfe-4992-b1d3-dba21a4d2353 680867a4a820f86811c504e57af9552b {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor"} -C3L-02412.WXS.T.hg38 C3L-02412 UCEC WXS tumor CPT0111950009 c6136e6f-066c-4436-ac0f-3890c4f7c0d0_wxs_gdc_realn.bam 31392793713 BAM harmonized CPTAC3 ee68b2a0-2c54-44f7-beec-06649f3d3ff6 bb907a559f54d69f1f8b05ce5d36b333 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor"} -C3L-02448.miRNA-Seq.S40_L002_R1.T C3L-02448 UCEC miRNA-Seq tumor CPT0186630025 190508_UNC31-K00269_0215_BH7FYKBBXY_CTCAGA_S40_L002_R1_001.unaln.bam 277878863 BAM S40_L002_R1 unaligned CPTAC3 cb9a266f-f4bf-45b8-8d85-194b0ae73907 02564ccdf3d2bbfe0ab638d364d8c28f {"aliquot_tag": "ALQ_6c2c6ac1", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02448.miRNA-Seq.T.hg38 C3L-02448 UCEC miRNA-Seq tumor CPT0186630025 070c3400-70de-440a-9804-56ae2d52a92e_mirnaseq_gdc_realn.bam 304278318 BAM harmonized CPTAC3 fca3960b-e3e2-4ce7-98a5-5672cbbe069c 1f94dd9b46599fd8c6e4e7d0fd7a907e {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor"} -C3L-02448.RNA-Seq.chimeric.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.chimeric.gdc_realn.bam 34327681 BAM chimeric harmonized CPTAC3 907b7581-bd30-4b63-a632-47f7a2496100 1dc530d470fd57609be1d79e654a11c2 {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor"} -C3L-02448.RNA-Seq.genomic.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.genomic.gdc_realn.bam 7920322732 BAM genomic harmonized CPTAC3 bf3baf13-6e56-43d9-8e46-bc0ca461b9c5 7a0a8a0bc5f26b7a4fcbec0ba063f61e {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor"} -C3L-02448.RNA-Seq.S22_L006_R1.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R1_001.fastq.gz 3769800668 FASTQ S22_L006_R1 unaligned CPTAC3 0a6b5f61-d040-484a-99ad-4b8886703a69 16f0336ac17ba08b96a107def9c64ae4 {"aliquot_tag": "ALQ_6c2c6ac1", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02448.RNA-Seq.S22_L006_R2.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R2_001.fastq.gz 4248680653 FASTQ S22_L006_R2 unaligned CPTAC3 0a542eab-9406-4cee-944f-2ccd797f1b18 10183df69fdceac0984ecad2c4e1e91a {"aliquot_tag": "ALQ_6c2c6ac1", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02448.RNA-Seq.transcriptome.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.transcriptome.gdc_realn.bam 10549502138 BAM transcriptome harmonized CPTAC3 ef6176fc-4aa6-4bb8-a77d-fe8b4af870d8 a673b3dfc004cc40f212eeb796a172b0 {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor"} -C3L-02449.DUP_3349db51.WGS.N C3L-02449 UCEC WGS blood_normal CPT0186780002_1 CPT0186780002_1.WholeGenome.RP-1303.bam 87425359700 BAM aligned CPTAC3 a35e4efe-e9c0-46d6-909d-a16cf6c12121 14d152a1d55c71764ed877666290f791 {"aliquot_tag": "DUP_3349db51", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal"} -C3L-02449.DUP_3349db51.WGS.N.hg38 C3L-02449 UCEC WGS blood_normal CPT0186780002_1 608f78f8-a23b-4df9-b3f9-c0824695238d_wgs_gdc_realn.bam 126632110934 BAM harmonized CPTAC3 a8000967-e889-4f9e-b5a6-33ea8297cbc7 2e626cd33498e763e74b765800e3a5bb {"aliquot_tag": "DUP_3349db51", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal"} -C3L-02449.MethArray.Green.T C3L-02449 UCEC Methylation_Array tumor CPT0186720011 203561620091_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 353c63ab-8785-4cf8-9089-6e5680e188f7 3a229d15e39603410ac6a8b01c38b9eb {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor"} -C3L-02449.MethArray.Red.T C3L-02449 UCEC Methylation_Array tumor CPT0186720011 203561620091_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 fa0e0be1-0b58-4d22-8eb2-80f15309dd89 1816c92b01c134c20123032c8c014d4f {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor"} -C3L-02449.miRNA-Seq.S11_L003_R1.T C3L-02449 UCEC miRNA-Seq tumor CPT0186720014 190508_UNC31-K00269_0215_BH7FYKBBXY_GGCTAC_S11_L003_R1_001.unaln.bam 216017080 BAM S11_L003_R1 unaligned CPTAC3 fc630151-931e-46ce-b885-0996856f4a08 15cc6814b2cd72a2d911dfeac309b57d {"aliquot_tag": "ALQ_c63af381", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02449.miRNA-Seq.T.hg38 C3L-02449 UCEC miRNA-Seq tumor CPT0186720014 52b3ec42-b93e-4533-b8c2-f07b1a3a6a4f_mirnaseq_gdc_realn.bam 252448578 BAM harmonized CPTAC3 ae766422-a45c-42a3-9e4b-6e1c751c31ec 172f6b7cb6cdf1a4c02fe01c6c58c4d1 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.chimeric.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.chimeric.gdc_realn.bam 37796385 BAM chimeric harmonized CPTAC3 106a3b4c-79e7-4dea-a58e-38d76c104212 067f0c1cb4928d0be8ee5ba05192ae32 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.chimeric.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.chimeric.gdc_realn.bam 187234054 BAM chimeric harmonized CPTAC3 9681684f-95cd-4f76-ba61-28cdc3f6f681 bd3f18321e41d57684b1c3faeecf0660 {"aliquot_tag": "ALQ_200bc3ef", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.genomic.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.genomic.gdc_realn.bam 8689945256 BAM genomic harmonized CPTAC3 495fea92-b1d2-4974-84c4-b4f302e65b57 e11c13e2acb9ec7da2f6f456a364e073 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.genomic.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.genomic.gdc_realn.bam 10091292588 BAM genomic harmonized CPTAC3 05fec7e7-79d2-4478-bed3-e1619a4dd261 e582b84710b7ece8e83906f7962581a3 {"aliquot_tag": "ALQ_200bc3ef", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.S23_R1.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R1_001.fastq.gz 5953978764 FASTQ S23_R1 unaligned CPTAC3 a7794d59-4c2a-4e54-9428-bbc810669a80 b18f778ca68c0f58b00febf36489d7b1 {"aliquot_tag": "ALQ_200bc3ef", "sample": "S23", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.S23_R2.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R2_001.fastq.gz 6081868873 FASTQ S23_R2 unaligned CPTAC3 e359af4b-e8ff-4ac3-8cbc-7a5bc1ba5f9c c6f293febbefb6613db3234d243f883b {"aliquot_tag": "ALQ_200bc3ef", "sample": "S23", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.S31_L008_R1.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R1_001.fastq.gz 4129236265 FASTQ S31_L008_R1 unaligned CPTAC3 32193bba-1d22-4c17-b17a-01aae32f3280 6957d3dd8b3023f5336a248c89ce1561 {"aliquot_tag": "ALQ_c63af381", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.S31_L008_R2.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R2_001.fastq.gz 4737807954 FASTQ S31_L008_R2 unaligned CPTAC3 0d3037b1-dfa7-4961-b6f2-59e2e8e73da5 84d82e206ac896a0beecb8d96b6a5e5b {"aliquot_tag": "ALQ_c63af381", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.transcriptome.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.transcriptome.gdc_realn.bam 11380242310 BAM transcriptome harmonized CPTAC3 ce88c6eb-59f5-4895-836d-7953a3b35c55 bfa8bff19c5908eaf4f20bdc04743416 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor"} -C3L-02449.RNA-Seq.transcriptome.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.transcriptome.gdc_realn.bam 5897591817 BAM transcriptome harmonized CPTAC3 f1372439-b21a-451d-963b-960b61b5ca73 31289cba3728d6bb70bc8f0065a2cbff {"aliquot_tag": "ALQ_200bc3ef", "gdc_sample_type": "Primary Tumor"} -C3L-02449.WGS.N C3L-02449 UCEC WGS blood_normal CPT0186780002 CPT0186780002.WholeGenome.RP-1303.bam 20744730577 BAM aligned CPTAC3 0ba1abba-4565-4703-893e-dc03520f0c31 b4d068426bff929995d7a51b74a59318 {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal"} -C3L-02449.WGS.N.hg38 C3L-02449 UCEC WGS blood_normal CPT0186780002 f3a3cb29-ab76-4b95-9d3e-dd4b8b5b1237_wgs_gdc_realn.bam 28658182043 BAM harmonized CPTAC3 ecae7a24-aa78-423e-a70a-362e25e8d306 b7f2edfe5d20344fa38f20c7b2032d6a {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal"} -C3L-02449.WGS.T C3L-02449 UCEC WGS tumor CPT0186720011 CPT0186720011.WholeGenome.RP-1303.bam 72060076327 BAM aligned CPTAC3 1ed5ff40-ba7a-4ef6-827d-425d77f140b8 bf48ba9b208173c0e45d588da056fbcc {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor"} -C3L-02449.WGS.T.hg38 C3L-02449 UCEC WGS tumor CPT0186720011 59c241ad-6521-4160-9f53-e2008f8cb92d_wgs_gdc_realn.bam 104093743900 BAM harmonized CPTAC3 001c86d0-09a3-4ab5-8993-a55791828185 bd0532f73c8523a8f860854a336a4cd1 {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor"} -C3L-02449.WXS.N C3L-02449 UCEC WXS blood_normal CPT0186780002 CPT0186780002.WholeExome.RP-1303.bam 20744730615 BAM aligned CPTAC3 30b0cc8e-edf8-4a90-bd04-65b538847b22 c6754c57330c9d4f113b758f0cebeefc {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal"} -C3L-02449.WXS.N.hg38 C3L-02449 UCEC WXS blood_normal CPT0186780002 f3a3cb29-ab76-4b95-9d3e-dd4b8b5b1237_wxs_gdc_realn.bam 28684848068 BAM harmonized CPTAC3 87861ccd-0e1f-4499-9ddb-e290c7517df6 1fcc98ddf31eed33e9a03233bde74501 {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal"} -C3L-02449.WXS.T C3L-02449 UCEC WXS tumor CPT0186720011 CPT0186720011.WholeExome.RP-1303.bam 19817232862 BAM aligned CPTAC3 9eeaf2f2-4cb1-4a3a-a6d8-f6ec1f508c5a 7a032782c4de253581173c3252cc79fa {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor"} -C3L-02449.WXS.T.hg38 C3L-02449 UCEC WXS tumor CPT0186720011 59c241ad-6521-4160-9f53-e2008f8cb92d_wxs_gdc_realn.bam 26774917271 BAM harmonized CPTAC3 07f80918-aa00-45a6-a79c-292dcd624e77 af8e8a7e3188ad9e96f2be4ed81b9755 {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor"} -C3L-02463.MethArray.Green.A C3L-02463 PDA Methylation_Array tissue_normal CPT0126200006 203561620095_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a45f0b9d-05df-4da8-8b06-5474d34b6a01 ac83a9c4c1c0ad6a5ccd9c31eb02609a {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.MethArray.Green.T C3L-02463 PDA Methylation_Array tumor CPT0126160010 203028200014_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4fe0ae35-d53b-46ed-a4d5-1ac8e14b812a 90c6129729d766ea9c65cb99cfd33ffb {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor"} -C3L-02463.MethArray.Red.A C3L-02463 PDA Methylation_Array tissue_normal CPT0126200006 203561620095_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 9834cbd4-628c-44af-811b-ec309b353899 2a71f339240c9271057b6bbb871d1c89 {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.MethArray.Red.T C3L-02463 PDA Methylation_Array tumor CPT0126160010 203028200014_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 e61fad76-85fc-4b23-9751-e45fffa97d1f 0868171b18a22134cb94fa3e2a4be37d {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor"} -C3L-02463.miRNA-Seq.A.hg38 C3L-02463 PDA miRNA-Seq tissue_normal CPT0126200009 6f2a11df-d210-4ee3-ad1a-41fcfd2b7026_mirnaseq_gdc_realn.bam 232042347 BAM harmonized CPTAC3 ca078290-c4f9-4c87-8a2e-8cf8ff53a4d7 fcb10b1718d13f4ada69b7e33f80cd91 {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.miRNA-Seq.S21_L001_R1.A C3L-02463 PDA miRNA-Seq tissue_normal CPT0126200009 181108_UNC31-K00269_0162_AH255GBBXY_TCATTC_S21_L001_R1_001.unaln.bam 209073106 BAM S21_L001_R1 unaligned CPTAC3 b6234fad-12bb-4f6e-b589-ea7614ebb344 dc85ee8a5efb6f1de2360642e5663a24 {"aliquot_tag": "ALQ_1a5d6066", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.miRNA-Seq.S41_L004_R1.T C3L-02463 PDA miRNA-Seq tumor CPT0126160007 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L004_R1_001.unaln.bam 216046436 BAM S41_L004_R1 unaligned CPTAC3 58c8e5b7-d3db-4cd8-bd93-3acf148819c6 17a5a7381c16c0c7ac6a75a09fd90a5b {"aliquot_tag": "ALQ_f431ca6f", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02463.miRNA-Seq.T.hg38 C3L-02463 PDA miRNA-Seq tumor CPT0126160007 85c7be35-1b7e-404e-bc53-859b13d3fef8_mirnaseq_gdc_realn.bam 240026012 BAM harmonized CPTAC3 78994590-056a-4db8-abd0-f4fab5c66ebb 4ffd0801e3479ce9f6c5266f94263f35 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor"} -C3L-02463.RNA-Seq.chimeric.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.chimeric.gdc_realn.bam 65238887 BAM chimeric harmonized CPTAC3 ff4f00eb-24be-4118-8f17-c829f7712003 b1d88900f7d4c784e890943f63acd4e7 {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.RNA-Seq.chimeric.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.chimeric.gdc_realn.bam 189326991 BAM chimeric harmonized CPTAC3 b51b6d2e-c2bc-4ec3-96a7-dfacaf75a500 5e7e5872ad2df37526e4ecdb0e27a278 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor"} -C3L-02463.RNA-Seq.genomic.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.genomic.gdc_realn.bam 9127886309 BAM genomic harmonized CPTAC3 6bce3332-f473-4fc6-b22f-658de4f58e03 bdfe7bd49f1e0dfc98cf737658fce75e {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.RNA-Seq.genomic.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.genomic.gdc_realn.bam 9941375173 BAM genomic harmonized CPTAC3 523911a0-56d9-4f07-8e7e-b70311188909 d81192da4d25db7a9982c814f943ed59 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor"} -C3L-02463.RNA-Seq.S16_L004_R1.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4193574228 FASTQ S16_L004_R1 unaligned CPTAC3 30e3fce0-6014-4930-bad1-76b80c5bf529 a0f7e670b3219cdf65a149c6ea3c5bd9 {"aliquot_tag": "ALQ_1a5d6066", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.RNA-Seq.S16_L004_R2.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4669019038 FASTQ S16_L004_R2 unaligned CPTAC3 e1f56e1d-17f4-447b-b60d-0ba0da66268d a13dd1973cf7a78ddc4ec26cdc054004 {"aliquot_tag": "ALQ_1a5d6066", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.RNA-Seq.S3_L001_R1.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R1_001.fastq.gz 3682714278 FASTQ S3_L001_R1 unaligned CPTAC3 950545ec-e02e-4c64-8b58-8a1918505cad 53d37cc53b7928eac66192cad23d2b77 {"aliquot_tag": "ALQ_f431ca6f", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02463.RNA-Seq.S3_L001_R2.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R2_001.fastq.gz 4046869988 FASTQ S3_L001_R2 unaligned CPTAC3 348dab83-76e4-454e-8880-cd277acefa07 2717257ab862c9ed115850409981d08c {"aliquot_tag": "ALQ_f431ca6f", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02463.RNA-Seq.transcriptome.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.transcriptome.gdc_realn.bam 11444816490 BAM transcriptome harmonized CPTAC3 97858b61-8e71-4cdd-92f0-fec406b5279a d69062d4c513b2c00222416a391c77c5 {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.RNA-Seq.transcriptome.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.transcriptome.gdc_realn.bam 9909207707 BAM transcriptome harmonized CPTAC3 85460c26-60c6-43fe-acfb-a9cde51424ee a97d65b6109a2c47b31b0c0cd747f848 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor"} -C3L-02463.Targeted.T C3L-02463 PDA Targeted_Sequencing tumor CPT0126160010_1 CPT0126160010_1.CustomSelection.RP-1303.PDO-18786.bam 4180157917 BAM aligned CPTAC3 523d7b2e-5064-4b65-8ba3-b53d16dfcd90 54665ccaae7e2e80e2725c9e8372eaf6 {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor"} -C3L-02463.Targeted.T.hg38 C3L-02463 PDA Targeted_Sequencing tumor CPT0126160010_1 c07b641d-246b-40b4-b031-8ff1fab81044_targetedsequencing_gdc_realn.bam 5907294025 BAM harmonized CPTAC3 ad3d6c6f-c1df-4e53-9bc7-b9f59ba56155 77e9239b9a549b8de216be8de4c4b719 {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor"} -C3L-02463.WGS.A C3L-02463 PDA WGS tissue_normal CPT0126200006 CPT0126200006.WholeGenome.RP-1303.bam 68470065527 BAM aligned CPTAC3 9d8268aa-b906-4710-8c3e-23c5941a7f31 ba03e9ac8d1de94a001d30f6ef7f0e00 {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.WGS.A.hg38 C3L-02463 PDA WGS tissue_normal CPT0126200006 b37873ec-8a53-4a6b-8c34-1338e8313b55_wgs_gdc_realn.bam 99387447578 BAM harmonized CPTAC3 efdb4e60-e0f1-4559-a0d7-ccc948332a1b ba355f0d7fb88954a21032884db4193b {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.WGS.N C3L-02463 PDA WGS blood_normal CPT0124290002 CPT0124290002.WholeGenome.RP-1303.bam 54773447770 BAM aligned CPTAC3 67baaee0-e1d7-46b0-9718-7ed97f4279bc 176a8003b2404f7aaf3bd3ec2a758a54 {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02463.WGS.N.hg38 C3L-02463 PDA WGS blood_normal CPT0124290002 fc028a4c-0e9f-44f7-9d44-d51bee5a66b7_wgs_gdc_realn.bam 80233672127 BAM harmonized CPTAC3 3e1b5861-c5bc-4af4-b558-9a8e641940f1 f72df6541b968695a59e2697eeaf1772 {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02463.WGS.T C3L-02463 PDA WGS tumor CPT0126160010 CPT0126160010.WholeGenome.RP-1303.bam 65304048058 BAM aligned CPTAC3 dfd60e74-88c3-4767-b730-3c7e6ab8c586 06594bc9b8fd5d1f83ee40748e0d388f {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor"} -C3L-02463.WGS.T.hg38 C3L-02463 PDA WGS tumor CPT0126160010 c34fad46-4da8-4e0a-8b47-44c57040312b_wgs_gdc_realn.bam 95148435219 BAM harmonized CPTAC3 3455e2ae-0417-41f0-b283-f043d7f84d10 f7d4e4dc4f8cd0fe67622dbb220c4d17 {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor"} -C3L-02463.WXS.A C3L-02463 PDA WXS tissue_normal CPT0126200006 CPT0126200006.WholeExome.RP-1303.bam 22732683669 BAM aligned CPTAC3 ce3e1a6c-a119-4675-a5c8-f241579d048c ef7166818c9c5aa28b51a1eef830351b {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.WXS.A.hg38 C3L-02463 PDA WXS tissue_normal CPT0126200006 b37873ec-8a53-4a6b-8c34-1338e8313b55_wxs_gdc_realn.bam 30749070096 BAM harmonized CPTAC3 de451a81-c5cb-4c8b-9ab2-ff2d890d0b1f 536708c22cff7155f4ca6ef96f555e0b {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02463.WXS.N C3L-02463 PDA WXS blood_normal CPT0124290002 CPT0124290002.WholeExome.RP-1303.bam 51879521140 BAM aligned CPTAC3 a51d312e-6625-442b-b71d-22edad45bcad e35cb187109653cf519359defed9f58f {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02463.WXS.N.hg38 C3L-02463 PDA WXS blood_normal CPT0124290002 fc028a4c-0e9f-44f7-9d44-d51bee5a66b7_wxs_gdc_realn.bam 70496084291 BAM harmonized CPTAC3 0cbfda04-0da2-4ec1-b428-5a71b045c5b6 8ac86d28080149062a8857e26c6b2e19 {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal"} -C3L-02463.WXS.T C3L-02463 PDA WXS tumor CPT0126160010_1 CPT0126160010_1.WholeExome.RP-1303.bam 45184926050 BAM aligned CPTAC3 b71c5099-3ade-46da-abd6-d683411ec624 73f13c4167366f4ea72de6b1231d3457 {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor"} -C3L-02463.WXS.T C3L-02463 PDA WXS tumor CPT0126160010 CPT0126160010.WholeExome.RP-1303.bam 24804748112 BAM aligned CPTAC3 df24ced8-f16a-4d99-b042-4e24149669e6 e3302281ac2b0607790f84fca3ca395c {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor"} -C3L-02463.WXS.T.hg38 C3L-02463 PDA WXS tumor CPT0126160010_1 c07b641d-246b-40b4-b031-8ff1fab81044_wxs_gdc_realn.bam 61058541411 BAM harmonized CPTAC3 b2500e62-21dd-446c-9a7f-ba4100c5b5b4 4e26e1f8256d3c8e09637008248391ff {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor"} -C3L-02463.WXS.T.hg38 C3L-02463 PDA WXS tumor CPT0126160010 c34fad46-4da8-4e0a-8b47-44c57040312b_wxs_gdc_realn.bam 33335626547 BAM harmonized CPTAC3 27d55850-058a-4b69-8a5b-dcb5177a7054 f32616adb83fde6609d11cf671f091cb {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor"} -C3L-02465.MethArray.Green.T C3L-02465 GBM Methylation_Array tumor CPT0125570009 203219670117_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bcbb1bcf-488b-4edf-a72b-c44f84bce074 ba16df21752393c4e75faf116d235694 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor"} -C3L-02465.MethArray.Red.T C3L-02465 GBM Methylation_Array tumor CPT0125570009 203219670117_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 e9c698f6-6da3-43ab-976e-6f3ae017bc5f 433a90fdc35ee7474f1ea0b4cc9634d2 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor"} -C3L-02465.miRNA-Seq.S40_L005_R1.T C3L-02465 GBM miRNA-Seq tumor CPT0125570006 181119_UNC31-K00269_0165_AH27WCBBXY_CCGTCC_S40_L005_R1_001.unaln.bam 214530372 BAM S40_L005_R1 unaligned CPTAC3 aae13628-4093-4c01-938f-661e8741e983 c9c220147e39fd3cba1ba1be08098b08 {"aliquot_tag": "ALQ_142f8bc2", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02465.miRNA-Seq.T.hg38 C3L-02465 GBM miRNA-Seq tumor CPT0125570006 6c914cdc-ab48-4850-abec-484fa824f9f3_mirnaseq_gdc_realn.bam 237047784 BAM harmonized CPTAC3 08153e95-29f7-4524-a61d-21a46b3efa5e 701b0f2a2ba91b07db4b11dbf174119a {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor"} -C3L-02465.RNA-Seq.chimeric.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.chimeric.gdc_realn.bam 38635056 BAM chimeric harmonized CPTAC3 20622fe3-27e7-4593-b111-0f38d6fef4d0 238304c73720401ac2c9fa9887d7bc42 {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor"} -C3L-02465.RNA-Seq.genomic.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.genomic.gdc_realn.bam 9888082603 BAM genomic harmonized CPTAC3 b155c434-0075-4887-8abb-718adfceec66 85e179abcceb8a4fc9cc4f98aa203006 {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor"} -C3L-02465.RNA-Seq.S20_L005_R1.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R1_001.fastq.gz 4650716263 FASTQ S20_L005_R1 unaligned CPTAC3 ac4f58b0-4652-4aba-bba6-62f1cd4660f4 7f15be544a0612549fdc502c850b08c8 {"aliquot_tag": "ALQ_142f8bc2", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02465.RNA-Seq.S20_L005_R2.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R2_001.fastq.gz 4773241781 FASTQ S20_L005_R2 unaligned CPTAC3 806543ec-69d2-4461-8a3f-bbd40a94ddb2 4af94a62652582e8425fe1f32a4871ea {"aliquot_tag": "ALQ_142f8bc2", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02465.RNA-Seq.transcriptome.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.transcriptome.gdc_realn.bam 12223934142 BAM transcriptome harmonized CPTAC3 5dfa7ecc-2178-498e-bbab-d9544c59c0e0 b6f7434ebe2a49532d5795a90ad6f665 {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor"} -C3L-02465.WGS.N C3L-02465 GBM WGS blood_normal CPT0124250002 CPT0124250002.WholeGenome.RP-1303.bam 68413640457 BAM aligned CPTAC3 b9555383-4d63-4ec0-ac43-9fe6f82783a2 8730eede3469e5c135bf62c9e03eb627 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02465.WGS.N.hg38 C3L-02465 GBM WGS blood_normal CPT0124250002 f1a6dc62-ade8-4e25-bcf7-752ecbc4f7dc_wgs_gdc_realn.bam 100401110014 BAM harmonized CPTAC3 28431047-9ed6-4c05-85be-cca99883ae97 28f9a67bd04630059a80a8bd1347d849 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02465.WGS.T C3L-02465 GBM WGS tumor CPT0125570009 CPT0125570009.WholeGenome.RP-1303.bam 55547769252 BAM aligned CPTAC3 a462e70f-701b-4d8a-b014-8e3e6e75c068 32f5fdc8811bfb1be48a2f44f912ec3f {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor"} -C3L-02465.WGS.T.hg38 C3L-02465 GBM WGS tumor CPT0125570009 953ddd78-016b-47f4-8708-054f23481a45_wgs_gdc_realn.bam 80756863359 BAM harmonized CPTAC3 e919b6c7-d76f-44c1-a86f-7c732fce8858 1bd79bec68715071c71292aa869fb2a2 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor"} -C3L-02465.WXS.N C3L-02465 GBM WXS blood_normal CPT0124250002 CPT0124250002.WholeExome.RP-1303.bam 25403229812 BAM aligned CPTAC3 393ed771-7f85-49a7-9dbe-112f33630e26 74b3e3ef5fb29e0a833d15b585e0cc28 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02465.WXS.N.hg38 C3L-02465 GBM WXS blood_normal CPT0124250002 f1a6dc62-ade8-4e25-bcf7-752ecbc4f7dc_wxs_gdc_realn.bam 34705261693 BAM harmonized CPTAC3 d6e1f2b3-e517-4bc2-b974-459b0df11591 f190ba297b53e81f4fc6a46ea10175a4 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02465.WXS.T C3L-02465 GBM WXS tumor CPT0125570009 CPT0125570009.WholeExome.RP-1303.bam 24485468319 BAM aligned CPTAC3 35065904-4c09-4bd5-91e0-1be879f75827 afd624cc84b96be7dc28b7bf9a71658b {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor"} -C3L-02465.WXS.T.hg38 C3L-02465 GBM WXS tumor CPT0125570009 953ddd78-016b-47f4-8708-054f23481a45_wxs_gdc_realn.bam 33103819653 BAM harmonized CPTAC3 e4bb7174-7993-4379-a9db-59e60eaa30c3 72dfc42f3fb240e45b1d5bf97a6bce06 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor"} -C3L-02468.MethArray.Green.T C3L-02468 UCEC Methylation_Array tumor CPT0126000009 203220070165_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 97810bac-311c-4123-8b02-8b591065045c e4fc15648b2324b1b1b5a103994c8ccb {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor"} -C3L-02468.MethArray.Red.T C3L-02468 UCEC Methylation_Array tumor CPT0126000009 203220070165_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 0a5d0d35-6dbe-438d-9294-c35bf99da09d f7d5211eff7a629abfe4df5b491e8db5 {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor"} -C3L-02468.miRNA-Seq.A.hg38 C3L-02468 UCEC miRNA-Seq tissue_normal CPT0126010009 56bf9fe1-d9b3-44a0-87f1-168e2671859c_mirnaseq_gdc_realn.bam 237406690 BAM harmonized CPTAC3 1d6d86bc-c301-48ab-a2be-9d5c8a518581 2893bb423ef8e6021b3656c466f679c4 {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.miRNA-Seq.S33_L003_R1.T C3L-02468 UCEC miRNA-Seq tumor CPT0126000006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGGCG_S33_L003_R1_001.unaln.bam 190674497 BAM S33_L003_R1 unaligned CPTAC3 95064159-5fbc-4b6f-8330-372f46046916 822fa399bcf1228aa3091db4761c820f {"aliquot_tag": "ALQ_c72adcfc", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02468.miRNA-Seq.S40_L003_R1.A C3L-02468 UCEC miRNA-Seq tissue_normal CPT0126010009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L003_R1_001.unaln.bam 207918122 BAM S40_L003_R1 unaligned CPTAC3 689df0b0-661f-4063-ace1-867ed18da27e 5bb3422a8b0bb5e729b58774d1d52432 {"aliquot_tag": "ALQ_6af5e8dd", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.miRNA-Seq.T.hg38 C3L-02468 UCEC miRNA-Seq tumor CPT0126000006 e032644a-8d97-4595-a4e9-47e4672d83cf_mirnaseq_gdc_realn.bam 214708805 BAM harmonized CPTAC3 93b32cd5-d554-4c0c-af3e-fed0db538757 2148d3b35503f159afb725c3a914c182 {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.chimeric.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.chimeric.gdc_realn.bam 45524821 BAM chimeric harmonized CPTAC3 759da733-2d79-49cb-8daa-74d3af6cc798 9a41d1a5eb2edc07f495f55d14ff3ecb {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.RNA-Seq.chimeric.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.chimeric.gdc_realn.bam 31781777 BAM chimeric harmonized CPTAC3 93d03dca-7551-4ea5-92c7-ce742b19d328 d6c67c0a8eb3b6ca76198039911e800d {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.chimeric.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.chimeric.gdc_realn.bam 217043747 BAM chimeric harmonized CPTAC3 698607e2-e428-4c8d-a4b9-c24df6709b56 6f40891fb224ab29ed00a2b0207993c8 {"aliquot_tag": "ALQ_d60ebcff", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.genomic.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.genomic.gdc_realn.bam 8876468660 BAM genomic harmonized CPTAC3 06ce6265-3063-470d-9681-d87f3ff3843f 780293ea2b512f24c64ac2846db19b0d {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.RNA-Seq.genomic.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.genomic.gdc_realn.bam 7734627697 BAM genomic harmonized CPTAC3 ed417ff2-ae7b-429c-ab9c-64362feeb7ea e413a9a2a44c969a76ec189a7d8ecca8 {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.genomic.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.genomic.gdc_realn.bam 12878070423 BAM genomic harmonized CPTAC3 8fd94035-05ad-48e1-ab1f-7dc67b592c23 5ee24861308aa013072a3e238fa9c6a1 {"aliquot_tag": "ALQ_d60ebcff", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.S18_R1.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R1_001.fastq.gz 8099689554 FASTQ S18_R1 unaligned CPTAC3 0d845a2c-7ceb-4d1d-9b29-11cf261142fc bb3a0cadd33e1da4ce820a5799f1a4b1 {"aliquot_tag": "ALQ_d60ebcff", "sample": "S18", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.S18_R2.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R2_001.fastq.gz 8517453393 FASTQ S18_R2 unaligned CPTAC3 a65d8e0f-7103-47b1-802b-56105978deb6 e000a5a64ba846b10ee412f785f6e366 {"aliquot_tag": "ALQ_d60ebcff", "sample": "S18", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.S24_L008_R1.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R1_001.fastq.gz 4057572434 FASTQ S24_L008_R1 unaligned CPTAC3 58ab7a47-f657-44d3-b62b-41bf5f3810c3 91e7cdca99148d65933dd387f8b5617b {"aliquot_tag": "ALQ_6af5e8dd", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.RNA-Seq.S24_L008_R2.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R2_001.fastq.gz 4140807993 FASTQ S24_L008_R2 unaligned CPTAC3 8d47d4f6-0bad-42d0-acb6-194bf1d0b874 4bbe198c4d9732527d83b6bfa9f1a916 {"aliquot_tag": "ALQ_6af5e8dd", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.RNA-Seq.S5_L002_R1.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3538324955 FASTQ S5_L002_R1 unaligned CPTAC3 03e743a3-9e1d-4b19-876d-8aca16db36a6 a5a2dd99cfa466f9a06ba3ed342a18e3 {"aliquot_tag": "ALQ_c72adcfc", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.S5_L002_R2.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3897501067 FASTQ S5_L002_R2 unaligned CPTAC3 68db2989-e11f-43ac-9aa3-49c7423d98d2 6c0fdac19d36be666ed24199782aa34c {"aliquot_tag": "ALQ_c72adcfc", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.transcriptome.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.transcriptome.gdc_realn.bam 11065543007 BAM transcriptome harmonized CPTAC3 361624f0-58f2-476d-9ae1-1e3dd848870d 735f917adfe9343012ed98204dc062a4 {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.RNA-Seq.transcriptome.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.transcriptome.gdc_realn.bam 9229055499 BAM transcriptome harmonized CPTAC3 ec87a02a-a963-4749-9f43-542bbebc7da2 9ad98133bb6b78d5580eae18c89da35c {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor"} -C3L-02468.RNA-Seq.transcriptome.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.transcriptome.gdc_realn.bam 7767152690 BAM transcriptome harmonized CPTAC3 42dff721-f48b-4f09-8359-d202e6f18dd1 1d6d1ca3828f5f0c9145bfc92d229774 {"aliquot_tag": "ALQ_d60ebcff", "gdc_sample_type": "Primary Tumor"} -C3L-02468.WGS.A C3L-02468 UCEC WGS tissue_normal CPT0126010006 CPT0126010006.WholeGenome.RP-1303.bam 65084689239 BAM aligned CPTAC3 66fceed9-4290-485f-b442-440082ff46ce 7c7ffa8a663c74593b74633eb0e9d520 {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.WGS.A.hg38 C3L-02468 UCEC WGS tissue_normal CPT0126010006 52c4f856-6e69-4ad8-b8c1-edae35bdf6a2_wgs_gdc_realn.bam 95958803137 BAM harmonized CPTAC3 e633e2a1-334f-4b7d-a19f-fcd155b6cdbd 4a95fdff250ec7855c88549ca8b6ac8f {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.WGS.N C3L-02468 UCEC WGS blood_normal CPT0124280002 CPT0124280002.WholeGenome.RP-1303.bam 61149041857 BAM aligned CPTAC3 9445c7a2-c585-4a52-b773-d9469fd14907 538ea5270bc598e8b27041b886622cc4 {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal"} -C3L-02468.WGS.N.hg38 C3L-02468 UCEC WGS blood_normal CPT0124280002 6dcbce3e-ba98-4bdd-b436-03c9a2e37ea4_wgs_gdc_realn.bam 87940528141 BAM harmonized CPTAC3 70ce63ec-5515-491d-90d5-83c6f9a13010 2bc7e3ca1fd6ecda0f0fd4cea53ccdc4 {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal"} -C3L-02468.WGS.T C3L-02468 UCEC WGS tumor CPT0126000009 CPT0126000009.WholeGenome.RP-1303.bam 56995565060 BAM aligned CPTAC3 6f76ddee-0294-48e6-af34-1d99952b09e1 d1d5b7a798708cd6e56c83f1f49c68ec {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor"} -C3L-02468.WGS.T.hg38 C3L-02468 UCEC WGS tumor CPT0126000009 c7b1a2b5-e019-4e2e-a4f5-f0431a4a4260_wgs_gdc_realn.bam 84130853056 BAM harmonized CPTAC3 2dfed7a8-8b92-4382-915e-b94860938a25 689fc03a4ef59248f8ebea912405f788 {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor"} -C3L-02468.WXS.A C3L-02468 UCEC WXS tissue_normal CPT0126010006 CPT0126010006.WholeExome.RP-1303.bam 20581603832 BAM aligned CPTAC3 f1a5e9a9-6a0b-4a78-9af4-e07eefa65e4a e09346bbb5cefb725c27681601d0b83f {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.WXS.A.hg38 C3L-02468 UCEC WXS tissue_normal CPT0126010006 52c4f856-6e69-4ad8-b8c1-edae35bdf6a2_wxs_gdc_realn.bam 27964495490 BAM harmonized CPTAC3 4f3ce2a5-239e-4d6f-9b5b-543ef12a729f 0da1ea2241fe0eaaa3a31c1329d5f3ff {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02468.WXS.N C3L-02468 UCEC WXS blood_normal CPT0124280002 CPT0124280002.WholeExome.RP-1303.bam 21192188406 BAM aligned CPTAC3 70006ff4-4fe1-465d-95c7-3f58ea3752aa 2b3cc14126d563852f2519bb777570cf {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal"} -C3L-02468.WXS.N.hg38 C3L-02468 UCEC WXS blood_normal CPT0124280002 6dcbce3e-ba98-4bdd-b436-03c9a2e37ea4_wxs_gdc_realn.bam 29888947961 BAM harmonized CPTAC3 ffe64a6f-c04d-467b-bbee-d7c093aaa590 3427b36ccb2ee161122bf048e7443cce {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal"} -C3L-02468.WXS.T C3L-02468 UCEC WXS tumor CPT0126000009 CPT0126000009.WholeExome.RP-1303.bam 26652865559 BAM aligned CPTAC3 51d717c2-ac51-40f3-9090-2bdf24718fa5 bf6f7094d79d17b5ba374beeb590c00a {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor"} -C3L-02468.WXS.T.hg38 C3L-02468 UCEC WXS tumor CPT0126000009 c7b1a2b5-e019-4e2e-a4f5-f0431a4a4260_wxs_gdc_realn.bam 35813263638 BAM harmonized CPTAC3 13134508-53d4-495a-ae7f-120bae97c253 3875cf7e31f5a9dafa6072b1e5b3275a {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor"} -C3L-02504.MethArray.Green.T C3L-02504 GBM Methylation_Array tumor CPT0175060006 203027390089_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e757c2fe-5351-4e86-a5d7-14988fefd71b 18048159f15ac7aaba7132ce7c180cf4 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor"} -C3L-02504.MethArray.Red.T C3L-02504 GBM Methylation_Array tumor CPT0175060006 203027390089_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 dd8610fb-9518-4155-a29a-2336209bf909 8a39be526f94f7d07f17d0574ecc5fe2 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor"} -C3L-02504.miRNA-Seq.S11_L005_R1.T C3L-02504 GBM miRNA-Seq tumor CPT0175060009 181113_UNC31-K00269_0164_AH23NNBBXY_CATTTT_S11_L005_R1_001.unaln.bam 294859036 BAM S11_L005_R1 unaligned CPTAC3 59c0962c-44ca-451f-95e4-0314b121f99e c7db61e8161648571565e13cc8f2c1da {"aliquot_tag": "ALQ_a1dd2034", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02504.miRNA-Seq.T.hg38 C3L-02504 GBM miRNA-Seq tumor CPT0175060009 3c4160dd-7b99-4540-ba81-87bd64d21188_mirnaseq_gdc_realn.bam 336421967 BAM harmonized CPTAC3 26b919db-7001-40a2-8890-f54983a84034 6f700ff65163c358a6031d0c1b1dbf93 {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor"} -C3L-02504.RNA-Seq.chimeric.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.chimeric.gdc_realn.bam 37041682 BAM chimeric harmonized CPTAC3 b6a0e339-3f9e-41db-bf44-2b90685acba8 fbfec2be9176d00b2f337d0aafa8c1e0 {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor"} -C3L-02504.RNA-Seq.genomic.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.genomic.gdc_realn.bam 8834070426 BAM genomic harmonized CPTAC3 ab410031-560c-428a-9f17-c8ff78f960d8 6788bbd05ced70b88aff48f48de6038a {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor"} -C3L-02504.RNA-Seq.S26_L007_R1.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R1_001.fastq.gz 3824763022 FASTQ S26_L007_R1 unaligned CPTAC3 610f16a0-bf50-479f-879e-175a725fbca8 6fbc82dca5205d8c415a2733a2dc9f22 {"aliquot_tag": "ALQ_a1dd2034", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02504.RNA-Seq.S26_L007_R2.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R2_001.fastq.gz 4331599960 FASTQ S26_L007_R2 unaligned CPTAC3 03bfaa3f-e68a-46a5-90e3-5af109ded101 fb515e04a05623ed0ccd3dc2ce47c0b1 {"aliquot_tag": "ALQ_a1dd2034", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02504.RNA-Seq.transcriptome.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.transcriptome.gdc_realn.bam 9718559532 BAM transcriptome harmonized CPTAC3 9ab37241-46f3-48f0-9f13-7761e32c0241 edaa87925b6d70852110462c7f3a577f {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor"} -C3L-02504.WGS.N C3L-02504 GBM WGS blood_normal CPT0175520002 CPT0175520002.WholeGenome.RP-1303.bam 64059792273 BAM aligned CPTAC3 f2d58309-c05c-4593-8ce5-a71a291680d3 3c642f9ccc3e463567f18facd684c8c8 {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02504.WGS.N.hg38 C3L-02504 GBM WGS blood_normal CPT0175520002 40f6448c-51b7-499e-8c86-300966f87b99_wgs_gdc_realn.bam 91176818503 BAM harmonized CPTAC3 d4ff5445-c045-4bd0-80da-bbfb01175a2b fcb2cc8536c8271a39bb0f817e59b313 {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02504.WGS.T C3L-02504 GBM WGS tumor CPT0175060006 CPT0175060006.WholeGenome.RP-1303.bam 62356913341 BAM aligned CPTAC3 00aad068-846d-4e56-8a4d-c7459f41aa19 6da01c5e1980c5a2a61b34967c4789b2 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor"} -C3L-02504.WGS.T.hg38 C3L-02504 GBM WGS tumor CPT0175060006 df794db3-ed91-4798-a664-49ff826f1131_wgs_gdc_realn.bam 90359529343 BAM harmonized CPTAC3 ffa548b6-0285-432c-bb41-fd5d5df3b546 c737bfe427b0b2bbd340488abab0a950 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor"} -C3L-02504.WXS.N C3L-02504 GBM WXS blood_normal CPT0175520002 CPT0175520002.WholeExome.RP-1303.bam 28884093069 BAM aligned CPTAC3 09677176-e18a-43c9-b505-e452a53f1fc6 ed950536ded90846c9fe3ab929393ddc {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02504.WXS.N.hg38 C3L-02504 GBM WXS blood_normal CPT0175520002 40f6448c-51b7-499e-8c86-300966f87b99_wxs_gdc_realn.bam 38502204845 BAM harmonized CPTAC3 ff07f11b-862a-4137-8e9a-0a609735348c 7b86247cc9625c1811ceb79516e642b6 {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02504.WXS.T C3L-02504 GBM WXS tumor CPT0175060006 CPT0175060006.WholeExome.RP-1303.bam 24975223263 BAM aligned CPTAC3 e3cca691-ea08-4a2b-9a55-301b3b44543f d9c0621dd82650210db0586eeeabe72f {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor"} -C3L-02504.WXS.T.hg38 C3L-02504 GBM WXS tumor CPT0175060006 df794db3-ed91-4798-a664-49ff826f1131_wxs_gdc_realn.bam 34169597250 BAM harmonized CPTAC3 f04a4040-c88c-4925-9881-a4542b13c817 4e5da355ddfd4c34238207dbbc73940c {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor"} -C3L-02508.MethArray.Green.A C3L-02508 LUAD Methylation_Array tissue_normal CPT0125830009 203028200014_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 729d91aa-2b94-40c3-8ed4-a36e73d319a0 0174e126f9fddc3af79c97dd23596546 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.MethArray.Green.T C3L-02508 LUAD Methylation_Array tumor CPT0125810009 202234380024_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 5d75f0d0-a85e-428b-a757-1307e500ea59 b6d6afa7bd8dec7af28832b5269406dd {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor"} -C3L-02508.MethArray.Red.A C3L-02508 LUAD Methylation_Array tissue_normal CPT0125830009 203028200014_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 af00f4fe-dc38-4441-af20-958368508020 e0c5e23eeedd2fc8ea72519d2ad1e6c9 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.MethArray.Red.T C3L-02508 LUAD Methylation_Array tumor CPT0125810009 202234380024_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 31fd4f67-b178-499c-a4f7-cb3abfc65d7f 5d738221dfdc94c655eb944ebf4bd0bd {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor"} -C3L-02508.miRNA-Seq.A.hg38 C3L-02508 LUAD miRNA-Seq tissue_normal CPT0125830006 8516be4d-b654-421c-8f5e-a20796c22586_mirnaseq_gdc_realn.bam 254043971 BAM harmonized CPTAC3 e3a745ca-c910-42cb-8e03-24abb258bfc4 ed2e402af0edcd7b7d2b5547c67a7a27 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.miRNA-Seq.S18_L007_R1.A C3L-02508 LUAD miRNA-Seq tissue_normal CPT0125830006 181108_UNC31-K00269_0162_AH255GBBXY_TAATCG_S18_L007_R1_001.unaln.bam 233764040 BAM S18_L007_R1 unaligned CPTAC3 0cf6d1bf-26fe-4038-b7a9-e2dfb056ee00 11e99babb0ceed21567bf2b805d366b9 {"aliquot_tag": "ALQ_5d313edc", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.miRNA-Seq.S46_L003_R1.T C3L-02508 LUAD miRNA-Seq tumor CPT0125810006 181119_UNC31-K00269_0165_AH27WCBBXY_CGTACG_S46_L003_R1_001.unaln.bam 269517095 BAM S46_L003_R1 unaligned CPTAC3 116598f0-adff-415e-80c2-d160a6867a32 6152d63ac449c09e48007dc010515a58 {"aliquot_tag": "ALQ_27f16dbc", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02508.miRNA-Seq.T.hg38 C3L-02508 LUAD miRNA-Seq tumor CPT0125810006 938e1712-0272-48f8-9ff5-297925c497ff_mirnaseq_gdc_realn.bam 302402199 BAM harmonized CPTAC3 7f4cf57d-7112-40d3-8355-6c906d243d74 353dc4f43be6b14ac8ead7255f14e95b {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor"} -C3L-02508.RNA-Seq.chimeric.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.chimeric.gdc_realn.bam 60248610 BAM chimeric harmonized CPTAC3 bdc420f5-93e5-4e40-8beb-7910267fe0d3 21def2b03a1f730de7043d5a90c9b004 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.RNA-Seq.chimeric.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.chimeric.gdc_realn.bam 79200908 BAM chimeric harmonized CPTAC3 48993da0-76d5-423c-9ae6-e04cb5eb6c6c 9f37c147045847abba58d7291ff87136 {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor"} -C3L-02508.RNA-Seq.genomic.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.genomic.gdc_realn.bam 8840913347 BAM genomic harmonized CPTAC3 dff0b361-72d9-4f9c-9981-5a5b437aab8f 5c882511f019469cf30a3496a515fac2 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.RNA-Seq.genomic.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.genomic.gdc_realn.bam 9514060873 BAM genomic harmonized CPTAC3 568682b4-7cbb-407e-ae6b-9984fea69a68 364874893e7b9756dbd4e11b12680f92 {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor"} -C3L-02508.RNA-Seq.S13_L004_R1.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 3978809521 FASTQ S13_L004_R1 unaligned CPTAC3 051c1a4d-3903-4116-96b0-2b43064c545a d8107c5c8d830706f7edd251d7469d74 {"aliquot_tag": "ALQ_27f16dbc", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02508.RNA-Seq.S13_L004_R2.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4504315558 FASTQ S13_L004_R2 unaligned CPTAC3 072ecd6f-d4b8-4559-83fb-6e11d63c5c40 538ea4bc16b523883fa3013d6df1f492 {"aliquot_tag": "ALQ_27f16dbc", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02508.RNA-Seq.S8_L002_R1.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R1_001.fastq.gz 4226756178 FASTQ S8_L002_R1 unaligned CPTAC3 754e4fa4-7970-4f97-927b-c5554a581b1f 544dd274ec2a095881632b18dc95df44 {"aliquot_tag": "ALQ_5d313edc", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.RNA-Seq.S8_L002_R2.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R2_001.fastq.gz 4225613884 FASTQ S8_L002_R2 unaligned CPTAC3 c62c71c6-583b-4436-a075-f79dc12be2ff c47370937b7c6eb683be76a7a28b71e5 {"aliquot_tag": "ALQ_5d313edc", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.RNA-Seq.transcriptome.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.transcriptome.gdc_realn.bam 9458256276 BAM transcriptome harmonized CPTAC3 cd2e9c8c-bf12-481d-a632-5215f7767d40 267719625051ea20d6dc464295e75c76 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.RNA-Seq.transcriptome.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.transcriptome.gdc_realn.bam 14028507605 BAM transcriptome harmonized CPTAC3 0ae7d5e9-a70f-478a-a552-8cd0bb5bee37 ad2bac014f1b978c749fa9e781b9e8f8 {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor"} -C3L-02508.WGS.A C3L-02508 LUAD WGS tissue_normal CPT0125830009 CPT0125830009.WholeGenome.RP-1303.bam 60298653057 BAM aligned CPTAC3 1102d0b1-cdd7-4f7e-80d4-35de9f2875ba e71cdfdcba7aca01b8b03f45f5645651 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.WGS.A.hg38 C3L-02508 LUAD WGS tissue_normal CPT0125830009 0b76afcf-e5dc-45d5-9d4f-45eb93e83b71_wgs_gdc_realn.bam 87951380013 BAM harmonized CPTAC3 e4cfae1b-9690-471e-8ebc-fa2419c2691c f53b953b757e55c5dbe4f766dbc00be1 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.WGS.N C3L-02508 LUAD WGS blood_normal CPT0124270002 CPT0124270002.WholeGenome.RP-1303.bam 60632759447 BAM aligned CPTAC3 bb5185c2-43b4-40d0-b9e3-1a20f422eccd 18dbfd8a95bd0a513768258f6f19e18a {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02508.WGS.N.hg38 C3L-02508 LUAD WGS blood_normal CPT0124270002 e6224d19-f9dd-498b-bb7e-5c7fb847dd52_wgs_gdc_realn.bam 89294281274 BAM harmonized CPTAC3 2509fb9f-8364-40ac-a019-9ad013618340 af65ab01a46c6ced5071969c5bf41caa {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02508.WGS.T C3L-02508 LUAD WGS tumor CPT0125810009 CPT0125810009.WholeGenome.RP-1303.bam 57060223859 BAM aligned CPTAC3 3766f19a-b0e1-4575-89a4-33481def60bd df59e5a4f242f21e188504b0cce72dcf {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor"} -C3L-02508.WGS.T.hg38 C3L-02508 LUAD WGS tumor CPT0125810009 0196af9e-08f9-41a7-9f95-38ccf723f916_wgs_gdc_realn.bam 83452937597 BAM harmonized CPTAC3 8fab451a-8376-46f4-bcfc-ee673c3a5353 ea29c686e4d341f40f95594fe20457de {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor"} -C3L-02508.WXS.A C3L-02508 LUAD WXS tissue_normal CPT0125830009 CPT0125830009.WholeExome.RP-1303.bam 44825747014 BAM aligned CPTAC3 a691d4a1-40db-4cad-90d0-8fec8bc0f55a f15992d90eba731ae750b12ef9285aeb {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.WXS.A.hg38 C3L-02508 LUAD WXS tissue_normal CPT0125830009 0b76afcf-e5dc-45d5-9d4f-45eb93e83b71_wxs_gdc_realn.bam 60878714696 BAM harmonized CPTAC3 73327dc1-eea4-42fe-884b-0773b974af81 2498b92b0f473db9114881b12ee2de9a {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02508.WXS.N C3L-02508 LUAD WXS blood_normal CPT0124270002 CPT0124270002.WholeExome.RP-1303.bam 30615967730 BAM aligned CPTAC3 a80bbd35-1587-4b89-8ea7-c805d229d088 c30af53e12b3d818b8264cc204904e67 {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02508.WXS.N.hg38 C3L-02508 LUAD WXS blood_normal CPT0124270002 e6224d19-f9dd-498b-bb7e-5c7fb847dd52_wxs_gdc_realn.bam 41788538764 BAM harmonized CPTAC3 9d738aaf-635d-49a5-893f-42852075b115 e21e6ae6a1204dc5f9c4252f7eba9823 {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02508.WXS.T C3L-02508 LUAD WXS tumor CPT0125810009 CPT0125810009.WholeExome.RP-1303.bam 40421532475 BAM aligned CPTAC3 16a84051-89d4-4847-9805-0b2683160916 7b184718f5db09f639cd1547c30c9db0 {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor"} -C3L-02508.WXS.T.hg38 C3L-02508 LUAD WXS tumor CPT0125810009 0196af9e-08f9-41a7-9f95-38ccf723f916_wxs_gdc_realn.bam 56319684986 BAM harmonized CPTAC3 84e915a3-de8a-4bd4-b3ed-e3467f424e88 0ddd2ea23efe80f3e2d0c0436e60bf17 {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor"} -C3L-02513.MethArray.Green.A C3L-02513 LUAD Methylation_Array tissue_normal CPT0210250006 203561450014_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 a8905a5c-6d6a-4108-9331-6e96c0b1bcb9 4b9a5cb3313e0b33243fa3a66a89896d {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.MethArray.Green.T C3L-02513 LUAD Methylation_Array tumor CPT0210240006 203561450062_R04C01_Grn.idat 13676217 IDAT Green NA CPTAC3 6f0767f0-b2be-4f31-aba4-7221eee3369e 9399a874174ef48a718ec605640bbd5d {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor"} -C3L-02513.MethArray.Red.A C3L-02513 LUAD Methylation_Array tissue_normal CPT0210250006 203561450014_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 7afa0eeb-bfb5-4887-9db3-9fccda9c1c6d 26aba1eeef1647cf0cb04b9e72a72aae {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.MethArray.Red.T C3L-02513 LUAD Methylation_Array tumor CPT0210240006 203561450062_R04C01_Red.idat 13676217 IDAT Red NA CPTAC3 48875df9-d612-42a9-9f07-b47a2b252030 bb33bea95487115a9c533f5fdddc7ab1 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor"} -C3L-02513.miRNA-Seq.A.hg38 C3L-02513 LUAD miRNA-Seq tissue_normal CPT0210250009 de550522-e5de-4ade-931c-98ded5889498_mirnaseq_gdc_realn.bam 253883690 BAM harmonized CPTAC3 fa7eb2b1-e61a-409b-85b0-0eee93a09ec3 26aaf4f6e3c36b58d9fa361caaadd54c {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.miRNA-Seq.S48_L006_R1.A C3L-02513 LUAD miRNA-Seq tissue_normal CPT0210250009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCCCGA_S48_L006_R1_001.unaln.bam 224911126 BAM S48_L006_R1 unaligned CPTAC3 75357161-bb85-4ade-9c96-be204d9bd61f a075c60b08e720e4055a9d8039418508 {"aliquot_tag": "ALQ_66fe10a", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.miRNA-Seq.S6_L005_R1.T C3L-02513 LUAD miRNA-Seq tumor CPT0210240009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAGCTT_S6_L005_R1_001.unaln.bam 249837355 BAM S6_L005_R1 unaligned CPTAC3 7fc73644-6030-44bb-94be-e68ded9c59f3 ef395630cef631d154468a626b751490 {"aliquot_tag": "ALQ_3b0fc8ba", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02513.miRNA-Seq.T.hg38 C3L-02513 LUAD miRNA-Seq tumor CPT0210240009 104372e6-69d4-485c-913b-7769b529d99c_mirnaseq_gdc_realn.bam 279291587 BAM harmonized CPTAC3 a4f8b867-e880-4a11-9077-693487edb01e e526a05dcca679728f790faddbd4de0d {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor"} -C3L-02513.RNA-Seq.chimeric.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.chimeric.gdc_realn.bam 35192550 BAM chimeric harmonized CPTAC3 cca24d49-2e82-4b95-a209-4ff0988b06fc e881b3f88e1e56d0b0951ff280fa9385 {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.RNA-Seq.chimeric.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.chimeric.gdc_realn.bam 37320818 BAM chimeric harmonized CPTAC3 805315da-7260-4db6-93bd-3a4502c49e35 b290a6ab8bd81bdcdb7de50287d8c7fa {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor"} -C3L-02513.RNA-Seq.genomic.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.genomic.gdc_realn.bam 13359866335 BAM genomic harmonized CPTAC3 d2431a63-59c9-49ea-8f45-248d5aa5a8b8 5db731c19eef0fc8b2662043abd0ec2b {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.RNA-Seq.genomic.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.genomic.gdc_realn.bam 13762854165 BAM genomic harmonized CPTAC3 dd450945-c98e-41bb-ad90-e877cb007d5e 180fb9d5ea971cd95a3ecd2dba2cc960 {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor"} -C3L-02513.RNA-Seq.S14_L004_R1.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R1_001.fastq.gz 4680465952 FASTQ S14_L004_R1 unaligned CPTAC3 c9fa24c1-4c5e-4070-af8e-a2e04832e2e7 1d8906cd3c6c00e1da8e8e55ad67486a {"aliquot_tag": "ALQ_3b0fc8ba", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02513.RNA-Seq.S14_L004_R2.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R2_001.fastq.gz 5124110057 FASTQ S14_L004_R2 unaligned CPTAC3 a79e8d3b-317a-4325-ac41-77ed676fd734 db95d62b4eca9c1ebf57b353137e718b {"aliquot_tag": "ALQ_3b0fc8ba", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02513.RNA-Seq.S1_L001_R1.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4876689160 FASTQ S1_L001_R1 unaligned CPTAC3 02fa8343-2a32-4650-852a-ccdf0199ba6e 0ae5e6037da3d7d151c0bb128ad84dd7 {"aliquot_tag": "ALQ_66fe10a", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.RNA-Seq.S1_L001_R2.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 5218746671 FASTQ S1_L001_R2 unaligned CPTAC3 90e73ecf-0992-4d89-8c1f-430d20dd5297 1789689f5b61076afcc32ea132c910b2 {"aliquot_tag": "ALQ_66fe10a", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.RNA-Seq.transcriptome.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.transcriptome.gdc_realn.bam 10078102973 BAM transcriptome harmonized CPTAC3 ab788d89-2b5f-49e6-a095-fc521868ef44 ce7b9336aeaad0cc90c61f8677002ad1 {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.RNA-Seq.transcriptome.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.transcriptome.gdc_realn.bam 10896734772 BAM transcriptome harmonized CPTAC3 b4454499-fd69-4eba-bb38-e3c787ce2d52 7a38a7e2aae029c37e93760d8c9cd728 {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor"} -C3L-02513.WGS.N C3L-02513 LUAD WGS blood_normal CPT0217640002 CPT0217640002.WholeGenome.RP-1303.bam 62477287554 BAM aligned CPTAC3 0188e621-7f55-4d70-b4d0-b246d1588cdb c590ca6aecf26649469bfab418280dac {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02513.WGS.N.hg38 C3L-02513 LUAD WGS blood_normal CPT0217640002 74edafa1-4a50-4008-86e2-a9eb190d6fa8_wgs_gdc_realn.bam 90996855976 BAM harmonized CPTAC3 0716024b-24f0-4611-a802-f225f75aaaab b49ff15baaf06baaf746a2d0626f379c {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02513.WGS.T C3L-02513 LUAD WGS tumor CPT0210240006 CPT0210240006.WholeGenome.RP-1303.bam 55491391384 BAM aligned CPTAC3 4fe02dc6-7114-48ae-b819-78f303aebd36 6d4636439d275e80654ae59673b663c8 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor"} -C3L-02513.WGS.T.hg38 C3L-02513 LUAD WGS tumor CPT0210240006 f08ae7c2-a6f9-4303-b65d-50f8313241e5_wgs_gdc_realn.bam 81113423740 BAM harmonized CPTAC3 9642af12-32b3-442e-99ca-1fdde7961c88 be9389c2ed1a6db37c63ac86e267799e {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor"} -C3L-02513.WXS.A C3L-02513 LUAD WXS tissue_normal CPT0210250006 CPT0210250006.WholeExome.RP-1303.bam 26282907819 BAM aligned CPTAC3 225e4392-5cf9-4f34-a66c-ef7b985dbd0d ffaf641ecee41ca11d6f15fa1e8b72b0 {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.WXS.A.hg38 C3L-02513 LUAD WXS tissue_normal CPT0210250006 85b0ac9e-da5d-4169-9e15-0d5dd7f5a502_wxs_gdc_realn.bam 36165515792 BAM harmonized CPTAC3 8f6571ca-9a3c-400b-a929-f12ce8f1c99e 155126413236938d7d2d371ec7b0b31d {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02513.WXS.N C3L-02513 LUAD WXS blood_normal CPT0217640002 CPT0217640002.WholeExome.RP-1303.bam 31693634817 BAM aligned CPTAC3 382528c9-58ba-4df3-88d7-fe7de3469732 29fdbcdf3dfba02d4a0b25853e3c1d39 {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02513.WXS.N.hg38 C3L-02513 LUAD WXS blood_normal CPT0217640002 74edafa1-4a50-4008-86e2-a9eb190d6fa8_wxs_gdc_realn.bam 43743090733 BAM harmonized CPTAC3 4875073d-1a0c-47d5-83bc-78bfff58baa3 e36c11147e60307d0b3566f4a012108a {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02513.WXS.T C3L-02513 LUAD WXS tumor CPT0210240006 CPT0210240006.WholeExome.RP-1303.bam 27141489265 BAM aligned CPTAC3 7bbfb444-c6af-47ef-9d28-4dac44b03571 bb34ebeb4ece25efa97349bccf6e86e4 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor"} -C3L-02513.WXS.T.hg38 C3L-02513 LUAD WXS tumor CPT0210240006 f08ae7c2-a6f9-4303-b65d-50f8313241e5_wxs_gdc_realn.bam 37512482813 BAM harmonized CPTAC3 7510a94f-e8d3-451a-aad7-41271d2c8da6 94203925883db4af029193516183bbc7 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor"} -C3L-02515.MethArray.Green.A C3L-02515 LUAD Methylation_Array tissue_normal CPT0169050006 203561620049_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7f2f35da-010d-4677-b436-7a91297fdfb9 cb082f7d6e38d9862e6bedda004514dd {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.MethArray.Green.T C3L-02515 LUAD Methylation_Array tumor CPT0169040006 203561620050_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f0c91f09-5bc2-43fc-8bc2-7c3eadc98cc5 af5e64e6492e90320e3fde63d4c262d7 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor"} -C3L-02515.MethArray.Red.A C3L-02515 LUAD Methylation_Array tissue_normal CPT0169050006 203561620049_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 3ec8a7e8-c7fe-4ebe-84a2-277b6d16107f 360ad12d79d7c8dfabaed32d860310ee {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.MethArray.Red.T C3L-02515 LUAD Methylation_Array tumor CPT0169040006 203561620050_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 fd54dd82-4581-47d6-924d-9f6ef7296e67 7e799a51c52a8813ea7d73858ad1f806 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor"} -C3L-02515.miRNA-Seq.A.hg38 C3L-02515 LUAD miRNA-Seq tissue_normal CPT0169050009 f462837a-d82d-48c5-837b-d60f3ba94e24_mirnaseq_gdc_realn.bam 228949801 BAM harmonized CPTAC3 36030b4a-807f-46a5-a99f-b58793d35114 e709c787262563694290491d5412095e {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.miRNA-Seq.S17_L005_R1.T C3L-02515 LUAD miRNA-Seq tumor CPT0169040009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTTTCG_S17_L005_R1_001.unaln.bam 192795633 BAM S17_L005_R1 unaligned CPTAC3 68782282-f447-4289-8465-fc77bdf021b5 aae75a98ebf801a8a953e9b775588460 {"aliquot_tag": "ALQ_d01719be", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02515.miRNA-Seq.S32_L007_R1.A C3L-02515 LUAD miRNA-Seq tissue_normal CPT0169050009 190712_UNC32-K00270_0192_BH7HL3BBXY_GATCAG_S32_L007_R1_001.unaln.bam 199380252 BAM S32_L007_R1 unaligned CPTAC3 7604fde5-5928-4dff-b0f8-da90966f5786 43ad23c64f798b2adb4663bf6aaf9878 {"aliquot_tag": "ALQ_ed77300e", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.miRNA-Seq.T.hg38 C3L-02515 LUAD miRNA-Seq tumor CPT0169040009 5490b44a-b1ad-4577-876b-45de6f8aa9d2_mirnaseq_gdc_realn.bam 212933420 BAM harmonized CPTAC3 8db2df46-f25e-4167-919b-32d6e07e070c 01c179fbb68b83e113ddab1bb3ae4fdb {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor"} -C3L-02515.RNA-Seq.chimeric.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.chimeric.gdc_realn.bam 62273895 BAM chimeric harmonized CPTAC3 8d8710c0-4e44-43c9-8fce-bbcca3ecc597 038dc9207cfd427c729ffe16b44c14ca {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.RNA-Seq.chimeric.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.chimeric.gdc_realn.bam 34873004 BAM chimeric harmonized CPTAC3 a0dfa370-73de-413e-a7f6-994e12cc9bb8 eab8f6b1e331de54293085ffbab017c3 {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor"} -C3L-02515.RNA-Seq.genomic.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.genomic.gdc_realn.bam 6583297441 BAM genomic harmonized CPTAC3 374c2a69-ccc4-4325-91db-66a642ef1d15 a6b2c6a569cbc859a602418d58006ac4 {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.RNA-Seq.genomic.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.genomic.gdc_realn.bam 13870033571 BAM genomic harmonized CPTAC3 e09911bf-8735-45b6-b708-f4fd2b483972 ca5b6108e283dbcedeff083bceb9e5ec {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor"} -C3L-02515.RNA-Seq.S3_L001_R1.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R1_001.fastq.gz 4328266410 FASTQ S3_L001_R1 unaligned CPTAC3 d30961dd-d56d-4dfd-8876-010b32a92c9e 571035660fe76ffc4e3c44339b0a4f72 {"aliquot_tag": "ALQ_d01719be", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02515.RNA-Seq.S3_L001_R2.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R2_001.fastq.gz 5015581215 FASTQ S3_L001_R2 unaligned CPTAC3 1621cf0d-6ab3-44bb-b617-4606fba642b0 5da36a1da09dabc6c0dbb1fe8af3972e {"aliquot_tag": "ALQ_d01719be", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02515.RNA-Seq.S6_L002_R1.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R1_001.fastq.gz 2719163841 FASTQ S6_L002_R1 unaligned CPTAC3 329f99fe-02fb-4a00-9470-e6bc43234b59 c6dae51e1199e60266c77f3f91168d96 {"aliquot_tag": "ALQ_ed77300e", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.RNA-Seq.S6_L002_R2.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R2_001.fastq.gz 3041179897 FASTQ S6_L002_R2 unaligned CPTAC3 b1412293-32c8-4901-96f6-48d7cae2cc8e f4e0d88c507b24234cd8fedf2f5338ed {"aliquot_tag": "ALQ_ed77300e", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.RNA-Seq.transcriptome.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.transcriptome.gdc_realn.bam 6168076572 BAM transcriptome harmonized CPTAC3 f0efcb5c-7a50-4e03-854f-12040dfa188f 81070844f4a700db859085f5f5b48e69 {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.RNA-Seq.transcriptome.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.transcriptome.gdc_realn.bam 9352754076 BAM transcriptome harmonized CPTAC3 a645df83-e511-4883-a334-e21214d68a27 bcbc9b6ac1c655253069fbaf58cf0f46 {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor"} -C3L-02515.WGS.N C3L-02515 LUAD WGS blood_normal CPT0167510002 CPT0167510002.WholeGenome.RP-1303.bam 63731998499 BAM aligned CPTAC3 3efbe2b0-c230-4ed3-b3eb-a4bafb200d92 bdbfddf83d8e0be33f4caeef7bfa9044 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02515.WGS.N.hg38 C3L-02515 LUAD WGS blood_normal CPT0167510002 59251b1e-8bc0-4f5d-a9f9-47bd64d6442d_wgs_gdc_realn.bam 92018912558 BAM harmonized CPTAC3 183894e5-ccfb-4f93-bbd3-aa80b13bf943 7e31c5f3142f347bbd72a26714de8ac6 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02515.WGS.T C3L-02515 LUAD WGS tumor CPT0169040006 CPT0169040006.WholeGenome.RP-1303.bam 68933764701 BAM aligned CPTAC3 8b33d5de-c8f8-4582-9f82-f95832085384 31811b333352a042b6052371a9bc73af {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor"} -C3L-02515.WGS.T.hg38 C3L-02515 LUAD WGS tumor CPT0169040006 0d79013b-c3d2-48fc-ad8a-9eb8427260bf_wgs_gdc_realn.bam 102541987186 BAM harmonized CPTAC3 89cc1441-cfcb-406c-99dd-9190b189b76b 2278d411b337bc5086987c820e089450 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor"} -C3L-02515.WXS.A C3L-02515 LUAD WXS tissue_normal CPT0169050006 CPT0169050006.WholeExome.RP-1303.bam 22697043854 BAM aligned CPTAC3 f0801a31-5aa6-4fb6-ad46-ea9e24c43b14 4a30c5b6af35f47f0f36f06b158b7bcd {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.WXS.A.hg38 C3L-02515 LUAD WXS tissue_normal CPT0169050006 97ea95f3-5254-4980-a446-5c4045593b86_wxs_gdc_realn.bam 31943764267 BAM harmonized CPTAC3 52c94e5a-a4f0-403a-ae4a-98ad11ee6154 78d931ecf1a17d6591d752c4be6cac90 {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02515.WXS.N C3L-02515 LUAD WXS blood_normal CPT0167510002 CPT0167510002.WholeExome.RP-1303.bam 27248261900 BAM aligned CPTAC3 bbef5368-6eaf-4c7c-a5bd-d4ac73715bac 83316d210b629cc570bb32eec58fa630 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02515.WXS.N.hg38 C3L-02515 LUAD WXS blood_normal CPT0167510002 59251b1e-8bc0-4f5d-a9f9-47bd64d6442d_wxs_gdc_realn.bam 38014276046 BAM harmonized CPTAC3 e46c9137-6f97-4aa2-987d-49a6fd52a1ed 021ef10952f30a5858ae4e6622dafa82 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal"} -C3L-02515.WXS.T C3L-02515 LUAD WXS tumor CPT0169040006 CPT0169040006.WholeExome.RP-1303.bam 27654686586 BAM aligned CPTAC3 69767576-2fbd-42c0-8802-a5b87ad7e1b5 8ed028023c11fc93556761a689796f6b {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor"} -C3L-02515.WXS.T.hg38 C3L-02515 LUAD WXS tumor CPT0169040006 0d79013b-c3d2-48fc-ad8a-9eb8427260bf_wxs_gdc_realn.bam 39196689830 BAM harmonized CPTAC3 e6407d89-b2e1-46f4-8428-a65f898589c5 6df8cb0a679e175b5325a03d7b56f897 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor"} -C3L-02542.MethArray.Green.T C3L-02542 GBM Methylation_Array tumor CPT0161730006 203027390078_R07C01_Grn.idat 13676227 IDAT Green NA CPTAC3 7a42ee10-3bff-4eab-a624-5a0a96ec8b66 884129d2bea6d505a7fef348d7981f1c {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor"} -C3L-02542.MethArray.Red.T C3L-02542 GBM Methylation_Array tumor CPT0161730006 203027390078_R07C01_Red.idat 13676227 IDAT Red NA CPTAC3 28375e29-7a4e-4da9-8af1-a3f86aaee102 7dbee8b18dfbc023f180b32000c0ba26 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor"} -C3L-02542.miRNA-Seq.S8_L001_R1.T C3L-02542 GBM miRNA-Seq tumor CPT0161730009 181119_UNC31-K00269_0165_AH27WCBBXY_CACTCA_S8_L001_R1_001.unaln.bam 146617757 BAM S8_L001_R1 unaligned CPTAC3 82fba379-9c4e-4e45-84cb-a14159a04c7d 1773f32423d8ac051610cec868c57e05 {"aliquot_tag": "ALQ_4cddbb71", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02542.miRNA-Seq.T.hg38 C3L-02542 GBM miRNA-Seq tumor CPT0161730009 9c2b85a6-9e7c-4a2a-93a7-7e2207c19003_mirnaseq_gdc_realn.bam 164518566 BAM harmonized CPTAC3 7da64cfa-f54f-4ab1-bf75-d4d376161038 d8f14a145ffc444c6178273aab45316d {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor"} -C3L-02542.RNA-Seq.chimeric.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.chimeric.gdc_realn.bam 33593623 BAM chimeric harmonized CPTAC3 2747e76b-112b-4f9d-b8cb-d32740a762a9 50c59173ad25e8a5849bbf075ba84471 {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor"} -C3L-02542.RNA-Seq.genomic.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.genomic.gdc_realn.bam 8230141629 BAM genomic harmonized CPTAC3 89bebecd-419a-4271-ae41-54ef4fbe97a5 e7b3f0fd57fb4c41e6b0a4c71b7a98bf {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor"} -C3L-02542.RNA-Seq.S16_L004_R1.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3905074445 FASTQ S16_L004_R1 unaligned CPTAC3 148dde8b-7f53-4016-9aef-da06c36753a1 cee2aa8153e6f000433593a0f9c2cbe2 {"aliquot_tag": "ALQ_4cddbb71", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02542.RNA-Seq.S16_L004_R2.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 4239373564 FASTQ S16_L004_R2 unaligned CPTAC3 d6009fd4-a604-4924-a56b-4894e2db69d1 91080ccdbbbd5a81127f59bf5d62b43e {"aliquot_tag": "ALQ_4cddbb71", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02542.RNA-Seq.transcriptome.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.transcriptome.gdc_realn.bam 9714230638 BAM transcriptome harmonized CPTAC3 1143e1d8-906a-4bdf-a2ca-16c1fd9dc43d b333832bb23aae8e0bb571f8d9c2820a {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor"} -C3L-02542.WGS.N C3L-02542 GBM WGS blood_normal CPT0162540002 CPT0162540002.WholeGenome.RP-1303.bam 53592597788 BAM aligned CPTAC3 e24da890-be79-4367-acf3-4460e864ecfe 9ba2e21d21435d08d9a8fb31d6be97c2 {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02542.WGS.N.hg38 C3L-02542 GBM WGS blood_normal CPT0162540002 daa74a11-fa31-4edd-9735-67188296ef8a_wgs_gdc_realn.bam 77449398479 BAM harmonized CPTAC3 b5daa535-65cf-4f16-9101-9694dbe04250 d3a3fec64e3eadbb69fac42d81fe890a {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02542.WGS.T C3L-02542 GBM WGS tumor CPT0161730006 CPT0161730006.WholeGenome.RP-1303.bam 65997826276 BAM aligned CPTAC3 ea21c3cd-3461-4a36-81ec-c124016a85ac 4627f604da99851a981be679153abfe6 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor"} -C3L-02542.WGS.T.hg38 C3L-02542 GBM WGS tumor CPT0161730006 ebd8c827-69e4-4261-a40b-05acc7a4ae5f_wgs_gdc_realn.bam 96691082498 BAM harmonized CPTAC3 25c37631-c529-48a3-936d-cc1d4e9d507e 65eebde9bc308f90b2c67409ea8dee05 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor"} -C3L-02542.WXS.N C3L-02542 GBM WXS blood_normal CPT0162540002 CPT0162540002.WholeExome.RP-1303.bam 37304589615 BAM aligned CPTAC3 8eff7af2-6b0f-4f30-b44b-30184c86416f a7f2496e04d078635cb40e887a4ee736 {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02542.WXS.N.hg38 C3L-02542 GBM WXS blood_normal CPT0162540002 daa74a11-fa31-4edd-9735-67188296ef8a_wxs_gdc_realn.bam 50763443826 BAM harmonized CPTAC3 04eb406b-04cb-4ba0-8f2b-1206bc574cb6 671516e886c0eed2da03544e916736da {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02542.WXS.T C3L-02542 GBM WXS tumor CPT0161730006 CPT0161730006.WholeExome.RP-1303.bam 27924046819 BAM aligned CPTAC3 8bb5089a-a9b5-4d53-912d-e45b9e2d11c7 255902f994a29bd4cf757fecd7f4f06f {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor"} -C3L-02542.WXS.T.hg38 C3L-02542 GBM WXS tumor CPT0161730006 ebd8c827-69e4-4261-a40b-05acc7a4ae5f_wxs_gdc_realn.bam 37545151388 BAM harmonized CPTAC3 ad6c74e3-a50c-42b1-b942-fee0feee169e 91a08d84cf783d9eef85f78368739734 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor"} -C3L-02544.MethArray.Green.A C3L-02544 CCRCC Methylation_Array tissue_normal CPT0113150006 204930630084_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b0bcd522-4b5c-4428-ae2e-194f64b8a757 4882545521b2d9b359c58659e801eaa1 {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.MethArray.Green.T C3L-02544 CCRCC Methylation_Array tumor CPT0113120009 203219650174_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f792ca8d-2161-4ca9-8575-a9c2937dd0ea 811c566b8892445f5e1a361005e1c4c3 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor"} -C3L-02544.MethArray.Red.A C3L-02544 CCRCC Methylation_Array tissue_normal CPT0113150006 204930630084_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 aac0893a-186f-443a-8e6c-f40a4aa6084c 9224048d24c3d417bd55627a3076e7bc {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.MethArray.Red.T C3L-02544 CCRCC Methylation_Array tumor CPT0113120009 203219650174_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5754eb08-40db-4c4e-8534-fd0e760fecec 1e6f11578eef0afc28379e791482ad49 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor"} -C3L-02544.miRNA-Seq.A.hg38 C3L-02544 CCRCC miRNA-Seq tissue_normal CPT0113150009 3c4d6334-524f-4863-881b-bbd42e5140d6_mirnaseq_gdc_realn.bam 174696658 BAM harmonized CPTAC3 1b8a9bb4-7979-4655-90e3-799bcf773d4b 051d288942a137cac0685ab7206b2171 {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.miRNA-Seq.S28_L003_R1.T C3L-02544 CCRCC miRNA-Seq tumor CPT0113120006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAAAAG_S28_L003_R1_001.unaln.bam 154198619 BAM S28_L003_R1 unaligned CPTAC3 821962f3-dd63-4d1d-bdb4-b8805201e92f 3efc8db7bfefd24e85ca6889bfd36aea {"aliquot_tag": "ALQ_aa01747d", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02544.miRNA-Seq.S5_L002_R1.A C3L-02544 CCRCC miRNA-Seq tissue_normal CPT0113150009 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L002_R1_001.unaln.bam 158671388 BAM S5_L002_R1 unaligned CPTAC3 54399c1c-3057-4bf2-8fae-26cc77af86cd dea47cee06a1eba611fef18bb8c9026a {"aliquot_tag": "ALQ_889eb5fc", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.miRNA-Seq.T.hg38 C3L-02544 CCRCC miRNA-Seq tumor CPT0113120006 f912281d-1692-4ae6-914a-c86e7332944f_mirnaseq_gdc_realn.bam 166170315 BAM harmonized CPTAC3 30567aee-2dae-4751-8db3-99324fac8bb9 2315cfbdd5210614afc2ba07fb3c40f9 {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor"} -C3L-02544.RNA-Seq.chimeric.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.chimeric.gdc_realn.bam 211404207 BAM chimeric harmonized CPTAC3 4576af93-6fae-4dac-939b-a94f75bef9fe 5338fa0517484bdba87743e32cd34fdc {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.RNA-Seq.chimeric.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.chimeric.gdc_realn.bam 24325628 BAM chimeric harmonized CPTAC3 ae14112c-d2b7-4c54-93a5-e4e8f4c22781 b135cd72189bdafae8e307f30f20b967 {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor"} -C3L-02544.RNA-Seq.genomic.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.genomic.gdc_realn.bam 9023126561 BAM genomic harmonized CPTAC3 6df8f6df-a38c-4b05-990e-e479a733e375 f71c0e284a9794482ee35c94715e5900 {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.RNA-Seq.genomic.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.genomic.gdc_realn.bam 7696440234 BAM genomic harmonized CPTAC3 218fd745-9368-43fb-881e-51174a944644 ffa0b495046572bd3cf312045a7e3c4b {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor"} -C3L-02544.RNA-Seq.S12_L003_R1.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R1_001.fastq.gz 3997638933 FASTQ S12_L003_R1 unaligned CPTAC3 1c7eb3e8-82ba-4343-a042-072fcc3794ff d48f2db97e8b9cfce9e2028bcccf1c1b {"aliquot_tag": "ALQ_889eb5fc", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.RNA-Seq.S12_L003_R2.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R2_001.fastq.gz 4220000969 FASTQ S12_L003_R2 unaligned CPTAC3 f526c9ce-0d0f-4a65-869d-2706062c141e d460432fcdc1c0e5f4bda865a4cf5a9a {"aliquot_tag": "ALQ_889eb5fc", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.RNA-Seq.S16_L004_R1.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3471671038 FASTQ S16_L004_R1 unaligned CPTAC3 d4cfc0a2-2492-41cb-9568-a4f46275642a a058f4a2852812631312e626a131ef62 {"aliquot_tag": "ALQ_aa01747d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02544.RNA-Seq.S16_L004_R2.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R2_001.fastq.gz 3683894349 FASTQ S16_L004_R2 unaligned CPTAC3 22f1da09-4dcf-4b82-aa88-5fc6b17d7fde 7a43c0de89eea5d618e9b92ab3f24a95 {"aliquot_tag": "ALQ_aa01747d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02544.RNA-Seq.transcriptome.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.transcriptome.gdc_realn.bam 9464863980 BAM transcriptome harmonized CPTAC3 321c73ba-83aa-481a-adb1-5d7da5801c35 02095f73dec09a2bc20fe699dbcbb43a {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.RNA-Seq.transcriptome.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.transcriptome.gdc_realn.bam 10240934861 BAM transcriptome harmonized CPTAC3 a6ddef06-eada-4b90-abc4-f734fd14a6ad 549e6678f427d18bdbc816909d0c8ae4 {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor"} -C3L-02544.WGS.A C3L-02544 CCRCC WGS tissue_normal CPT0113150006 CPT0113150006.WholeGenome.RP-1303.bam 55709517458 BAM aligned CPTAC3 cb8ceb2d-08cb-489d-823d-d0257a8f0e28 38799e675e55b1f590e198eba92501db {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.WGS.A.hg38 C3L-02544 CCRCC WGS tissue_normal CPT0113150006 835b94a2-fb69-44b9-b331-3485c383fd0d_wgs_gdc_realn.bam 82717616680 BAM harmonized CPTAC3 f6cace19-1b12-4003-8156-5ea5413327dd da8ba87ff0482bc956fcde48dad67826 {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.WGS.N C3L-02544 CCRCC WGS blood_normal CPT0115240002 CPT0115240002.WholeGenome.RP-1303.bam 57986596787 BAM aligned CPTAC3 378405fc-dd94-491d-a1a6-70a5299bc679 f3d19a78bf2259a4eeabbc58220dfff2 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal"} -C3L-02544.WGS.N.hg38 C3L-02544 CCRCC WGS blood_normal CPT0115240002 1430bf9c-586e-4959-a4d9-f5046d72e341_wgs_gdc_realn.bam 83173406666 BAM harmonized CPTAC3 47d5da90-42fe-416f-8d5a-ece103e761f0 3e534b1d2666e87c9a13b21c6075f059 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal"} -C3L-02544.WGS.T C3L-02544 CCRCC WGS tumor CPT0113120009 CPT0113120009.WholeGenome.RP-1303.bam 57063079595 BAM aligned CPTAC3 be9d2212-4bff-48c4-98df-c653e5a40475 c4ce4ad9b62aefbb3d5cd6b9c4b9edbd {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor"} -C3L-02544.WGS.T.hg38 C3L-02544 CCRCC WGS tumor CPT0113120009 2117b6c5-8d1c-4d2d-82d9-84ebc43d3642_wgs_gdc_realn.bam 82329901819 BAM harmonized CPTAC3 47a7c1ae-80fb-45fe-a36b-51916e2c7d67 198c499375aaa93b9bc12228f11c999e {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor"} -C3L-02544.WXS.A C3L-02544 CCRCC WXS tissue_normal CPT0113150006 CPT0113150006.WholeExome.RP-1303.bam 25797560904 BAM aligned CPTAC3 d70c4534-e20d-45bb-b9f9-f1578175d1cb 3a11f701c18f6ede5f11506f41ca2dd6 {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.WXS.A.hg38 C3L-02544 CCRCC WXS tissue_normal CPT0113150006 835b94a2-fb69-44b9-b331-3485c383fd0d_wxs_gdc_realn.bam 35779928831 BAM harmonized CPTAC3 bb7cf8f1-9d37-4ed8-9990-c46806df39fc 55ccb7116ab5decb3aa870d61d17607d {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02544.WXS.N C3L-02544 CCRCC WXS blood_normal CPT0115240002 CPT0115240002.WholeExome.RP-1303.bam 22818565189 BAM aligned CPTAC3 76be02a0-0e38-4b67-b628-d0db910f0209 a5e7a3c00ef44dc41f5febb6bec9aad7 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal"} -C3L-02544.WXS.N.hg38 C3L-02544 CCRCC WXS blood_normal CPT0115240002 1430bf9c-586e-4959-a4d9-f5046d72e341_wxs_gdc_realn.bam 31983572540 BAM harmonized CPTAC3 0362b27e-cc00-4ef6-96db-54cbbdee270f d8f4ce432e32e3d0a2b28d9d8e3a6633 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal"} -C3L-02544.WXS.T C3L-02544 CCRCC WXS tumor CPT0113120009 CPT0113120009.WholeExome.RP-1303.bam 25532004294 BAM aligned CPTAC3 5f63dc44-98a2-41c9-8a0b-2b32c43a4283 6626cdf309cd1fb5b0f77dbca84a2f15 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor"} -C3L-02544.WXS.T.hg38 C3L-02544 CCRCC WXS tumor CPT0113120009 2117b6c5-8d1c-4d2d-82d9-84ebc43d3642_wxs_gdc_realn.bam 35403318118 BAM harmonized CPTAC3 c74beb83-14ad-4e82-ad82-f1dc5736f37f fef1f6fb6f2b2bfc2193419bd75a0567 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor"} -C3L-02545.MethArray.Green.T C3L-02545 UCEC Methylation_Array tumor CPT0113060009 203271750010_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 9eb7c0af-0220-4c35-842d-0c76acf99e56 8ed106103cabd9b3ca7db2c5123ee663 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor"} -C3L-02545.MethArray.Red.T C3L-02545 UCEC Methylation_Array tumor CPT0113060009 203271750010_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 5f62c8fd-c2b5-4878-b492-d09c2181a347 9e72f19b70bab172b4ffade2a0a87d78 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor"} -C3L-02545.miRNA-Seq.S27_L003_R1.T C3L-02545 UCEC miRNA-Seq tumor CPT0113060006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATTCCT_S27_L003_R1_001.unaln.bam 240038644 BAM S27_L003_R1 unaligned CPTAC3 530131bc-d008-4cc6-b6bd-ec22db3eed54 865e07609d95ba1ca3405f1d51565be3 {"aliquot_tag": "ALQ_94dd0118", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02545.miRNA-Seq.T.hg38 C3L-02545 UCEC miRNA-Seq tumor CPT0113060006 fb628e9b-a0cd-4a65-8f0d-e41a04f84b9e_mirnaseq_gdc_realn.bam 265164087 BAM harmonized CPTAC3 3c2ae94e-4672-4321-b641-cc7a1930d0dd 475663eb832057bb21b641a117f851d8 {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.chimeric.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.chimeric.gdc_realn.bam 29960610 BAM chimeric harmonized CPTAC3 9382181c-923e-4ee5-a79b-9b983d292326 38285b33357be15ac063fb11245a39ba {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.chimeric.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.chimeric.gdc_realn.bam 212842259 BAM chimeric harmonized CPTAC3 918454e4-7af2-4796-9f23-c882685ffb8f 5579e33894783e1e93e985b6c6e6981c {"aliquot_tag": "ALQ_5365fcf1", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.genomic.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.genomic.gdc_realn.bam 8636012362 BAM genomic harmonized CPTAC3 7f20a0ec-73a2-4684-ae71-65f2cffef3d1 fe35b540ae502e9d53a6c1432301efd6 {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.genomic.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.genomic.gdc_realn.bam 10813974328 BAM genomic harmonized CPTAC3 b8f161ad-a712-40b9-8081-70110d6c2bba 748bfc5333ff9e59e10188c8e4ac97b3 {"aliquot_tag": "ALQ_5365fcf1", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.S13_L004_R1.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3948336685 FASTQ S13_L004_R1 unaligned CPTAC3 bcef598c-348e-4e73-9f94-e9c932caf978 20a0a9e5e366dd9f4c04e75644f20d08 {"aliquot_tag": "ALQ_94dd0118", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.S13_L004_R2.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 4317022674 FASTQ S13_L004_R2 unaligned CPTAC3 995d0b42-9e1a-403f-996d-6926d76a2ea0 eaf65a74a94b28a000c13977e99b68fe {"aliquot_tag": "ALQ_94dd0118", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.S13_R1.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R1_001.fastq.gz 6376594171 FASTQ S13_R1 unaligned CPTAC3 07341a0d-32ac-4857-8c04-810eddefc830 09acff0e5ee17f20d6b6c4685e928509 {"aliquot_tag": "ALQ_5365fcf1", "sample": "S13", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.S13_R2.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R2_001.fastq.gz 6623475324 FASTQ S13_R2 unaligned CPTAC3 80a0e685-3dc0-431f-9949-325fbe5ee7b8 c854afa634a1f308da7dc993391310c0 {"aliquot_tag": "ALQ_5365fcf1", "sample": "S13", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.transcriptome.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.transcriptome.gdc_realn.bam 10888004700 BAM transcriptome harmonized CPTAC3 a2ea2351-324a-4b1a-a9d5-fc4ddabdf612 d2451e839c28af6905d369cee2e1f164 {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor"} -C3L-02545.RNA-Seq.transcriptome.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.transcriptome.gdc_realn.bam 6586865901 BAM transcriptome harmonized CPTAC3 a358d36b-eb94-4046-818f-7b2de91c1540 adc171437a5314cc8f2b0c3a316671cd {"aliquot_tag": "ALQ_5365fcf1", "gdc_sample_type": "Primary Tumor"} -C3L-02545.WGS.N C3L-02545 UCEC WGS blood_normal CPT0115230002 CPT0115230002.WholeGenome.RP-1303.bam 60063306742 BAM aligned CPTAC3 36854f1c-ba3a-4d33-bd5e-fb6dd867c8d6 63da0d118f289e3c04dfbb6b17c5819b {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal"} -C3L-02545.WGS.N.hg38 C3L-02545 UCEC WGS blood_normal CPT0115230002 c318b321-0a84-424a-897e-68cbd9f5b838_wgs_gdc_realn.bam 87587039901 BAM harmonized CPTAC3 e655dbd5-c57d-42f2-9c25-24194b3f118a f516f7c3cd5422ac1483abffdeea6d33 {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal"} -C3L-02545.WGS.T C3L-02545 UCEC WGS tumor CPT0113060009 CPT0113060009.WholeGenome.RP-1303.bam 64030472861 BAM aligned CPTAC3 2185efb3-f734-451c-b7b8-b7e6cd825b52 a07c12b125f939bd3cf74a7ea10f2510 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor"} -C3L-02545.WGS.T.hg38 C3L-02545 UCEC WGS tumor CPT0113060009 7cb30cf9-6a37-4102-b3aa-ebc9666f8900_wgs_gdc_realn.bam 92449481381 BAM harmonized CPTAC3 d1df9248-1f34-4b5e-9eba-151721970fd3 be8313b6d6e385efd1bfd4aeb70998c8 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor"} -C3L-02545.WXS.N C3L-02545 UCEC WXS blood_normal CPT0115230002 CPT0115230002.WholeExome.RP-1303.bam 22457857338 BAM aligned CPTAC3 f7876d55-3527-400e-8889-a7b3df71a903 433b7db9f5c382ef69f3383503f5bc66 {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal"} -C3L-02545.WXS.N.hg38 C3L-02545 UCEC WXS blood_normal CPT0115230002 c318b321-0a84-424a-897e-68cbd9f5b838_wxs_gdc_realn.bam 31300845145 BAM harmonized CPTAC3 e82606e0-2b2d-4db5-929b-e2b4b4eccc02 dbb95c99ee1326c70168e53d23e386ed {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal"} -C3L-02545.WXS.T C3L-02545 UCEC WXS tumor CPT0113060009 CPT0113060009.WholeExome.RP-1303.bam 22908412616 BAM aligned CPTAC3 e2c2d258-2c01-4309-a99b-698ddfdbdfc5 538fb197ee8f27e9c5e3986d9a1fca5e {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor"} -C3L-02545.WXS.T.hg38 C3L-02545 UCEC WXS tumor CPT0113060009 7cb30cf9-6a37-4102-b3aa-ebc9666f8900_wxs_gdc_realn.bam 30986530120 BAM harmonized CPTAC3 d8bcef8d-af0b-4d75-adcf-d7e678876aad 6159d18017ead96cd0dfad86988dda87 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor"} -C3L-02546.MethArray.Green.A C3L-02546 LSCC Methylation_Array tissue_normal CPT0112660006 203220070171_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 aed8475f-3a53-4147-b3c4-6e9e147a8704 85c5535b176eaa860de2e08a00977552 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.MethArray.Green.T C3L-02546 LSCC Methylation_Array tumor CPT0112650009 203219650211_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 4b936277-009b-4d48-b60d-713c84507cbc 0e5f5c466a08f180726a2d26f7c1487f {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor"} -C3L-02546.MethArray.Red.A C3L-02546 LSCC Methylation_Array tissue_normal CPT0112660006 203220070171_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 e558631b-d1e5-42f7-8d42-8f8fdf499217 1e17755aeef9a9e448628e3c3d3efbe2 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.MethArray.Red.T C3L-02546 LSCC Methylation_Array tumor CPT0112650009 203219650211_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 87a6bd28-27c6-41a9-813d-d6728a3c3271 bd9c7276b23a58c0f85c8768fbbaf99c {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor"} -C3L-02546.miRNA-Seq.A.hg38 C3L-02546 LSCC miRNA-Seq tissue_normal CPT0112660009 9fdbe5a3-cb45-4187-9ec3-38efd1be3bbd_mirnaseq_gdc_realn.bam 346125493 BAM harmonized CPTAC3 cdef5296-e287-4169-abcd-eacbee0f625b 96936c05397377d4bd934ad8d1b7c4cc {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.miRNA-Seq.S36_L002_R1.A C3L-02546 LSCC miRNA-Seq tissue_normal CPT0112660009 181219_UNC31-K00269_0173_BHYGJJBBXX_CGGAAT_S36_L002_R1_001.unaln.bam 313303336 BAM S36_L002_R1 unaligned CPTAC3 ffdc3fcb-b4eb-48f3-93a8-89bc7701ce70 ca6407885f711f613499ca6e172bfc82 {"aliquot_tag": "ALQ_744cf420", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.miRNA-Seq.S5_L001_R1.T C3L-02546 LSCC miRNA-Seq tumor CPT0112650006 181219_UNC31-K00269_0173_BHYGJJBBXX_ACAGTG_S5_L001_R1_001.unaln.bam 254875826 BAM S5_L001_R1 unaligned CPTAC3 c108f38d-26f8-4920-8860-62f28e29091c 25125f332564364f68cf9b02a814e3c1 {"aliquot_tag": "ALQ_a3539361", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02546.miRNA-Seq.T.hg38 C3L-02546 LSCC miRNA-Seq tumor CPT0112650006 f7d7ac86-012e-4ebc-b1b8-699c65f50554_mirnaseq_gdc_realn.bam 278898204 BAM harmonized CPTAC3 9c53488d-5875-46b8-a50c-205db6a92d77 8a9db2318f0c5293e994d2213869a654 {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor"} -C3L-02546.RNA-Seq.chimeric.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.chimeric.gdc_realn.bam 28794113 BAM chimeric harmonized CPTAC3 7f597353-1b06-4b15-bb3d-19e24948d4a9 3c1acd4eaae7a12a70cb32a5bc46ad1d {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.RNA-Seq.chimeric.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.chimeric.gdc_realn.bam 37788798 BAM chimeric harmonized CPTAC3 d2acd089-cbd6-4f07-9468-aa8e6aafc0c2 4ac7f81899cd4bfe61b364b6a8c18bd6 {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor"} -C3L-02546.RNA-Seq.genomic.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.genomic.gdc_realn.bam 8582230701 BAM genomic harmonized CPTAC3 a32cc404-19d5-4bb4-bfa3-155c8fd9d5a6 6ffded1d6b6376e28b7c23a05ce01298 {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.RNA-Seq.genomic.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.genomic.gdc_realn.bam 9267959037 BAM genomic harmonized CPTAC3 edb0fa2d-0171-4440-931c-ee6d449ac10e f03d686e0c95e344a7c09f8ee7808123 {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor"} -C3L-02546.RNA-Seq.S23_L006_R1.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3851688918 FASTQ S23_L006_R1 unaligned CPTAC3 ea37fd16-da19-47cf-970e-010d21723214 25a3f974e773e8127846b0ac0b514392 {"aliquot_tag": "ALQ_744cf420", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.RNA-Seq.S23_L006_R1.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R1_001.fastq.gz 4327893784 FASTQ S23_L006_R1 unaligned CPTAC3 afb20289-623e-41ba-8730-b3414c9e6f1f 81842ed59b1307992a4c6f9d49b9b3f6 {"aliquot_tag": "ALQ_a3539361", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02546.RNA-Seq.S23_L006_R2.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 3995060515 FASTQ S23_L006_R2 unaligned CPTAC3 d7c32ece-35aa-4c16-850a-5e00b660fb62 556fa600b8718552a8c45cc8438da364 {"aliquot_tag": "ALQ_744cf420", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.RNA-Seq.S23_L006_R2.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4723029633 FASTQ S23_L006_R2 unaligned CPTAC3 9b8abc9d-9c19-4032-a25c-31b682b98864 3e9c2a1142bf236b0412e2b3617830a7 {"aliquot_tag": "ALQ_a3539361", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02546.RNA-Seq.transcriptome.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.transcriptome.gdc_realn.bam 9909257362 BAM transcriptome harmonized CPTAC3 3c5b3f0a-4dd4-4afe-b9e5-12d15a135bef 346be7831fc2f276b57a621a1dfd9ee6 {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.RNA-Seq.transcriptome.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.transcriptome.gdc_realn.bam 12675581366 BAM transcriptome harmonized CPTAC3 5e5702d4-8393-45a3-83e2-d3c368b3a136 2c661eebaa2396076a3fe3b134067b0c {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor"} -C3L-02546.WGS.A C3L-02546 LSCC WGS tissue_normal CPT0112660006 CPT0112660006.WholeGenome.RP-1303.bam 53230923345 BAM aligned CPTAC3 e557d1e2-61e7-4b81-a0ec-7434ace84453 28596e9a582aef122f4d43e2b5ea69f1 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.WGS.A.hg38 C3L-02546 LSCC WGS tissue_normal CPT0112660006 549d8dfc-90ff-4c2c-9306-c4b24ee1c81d_wgs_gdc_realn.bam 77462064099 BAM harmonized CPTAC3 d611f811-594f-47a1-93d8-8dcec08f3630 b19a3ddd6ee338661fa82265f54bea1b {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.WGS.N C3L-02546 LSCC WGS blood_normal CPT0115180002 CPT0115180002.WholeGenome.RP-1303.bam 61871477324 BAM aligned CPTAC3 8c4958d2-fb24-4ac8-8dc2-cf92bfadc063 780078399703a32b55e598c40318d1de {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02546.WGS.N.hg38 C3L-02546 LSCC WGS blood_normal CPT0115180002 800c8094-c41a-48ff-8af9-955d58e3db66_wgs_gdc_realn.bam 89632146514 BAM harmonized CPTAC3 2ed949aa-4ed0-41f6-8bee-ad3a4ba74d83 11b134c16639cb1757a090f79257a273 {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02546.WGS.T C3L-02546 LSCC WGS tumor CPT0112650009 CPT0112650009.WholeGenome.RP-1303.bam 53073233302 BAM aligned CPTAC3 182bf23d-fa6a-49f6-bb73-37524215e9f9 e5283eca69e104de4305c9f7c0349f96 {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor"} -C3L-02546.WGS.T.hg38 C3L-02546 LSCC WGS tumor CPT0112650009 4df9fe66-df3a-4c95-9e8a-99ff3c3ef043_wgs_gdc_realn.bam 77041069256 BAM harmonized CPTAC3 9095ed6f-aeb6-402b-82d1-a9c79f9a4ee7 7c2f1ce1a0c169b9f5540ecd381a322e {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor"} -C3L-02546.WXS.A C3L-02546 LSCC WXS tissue_normal CPT0112660006 CPT0112660006.WholeExome.RP-1303.bam 22983543524 BAM aligned CPTAC3 3e03a0e6-0159-4a3e-872e-ea4579d67f59 005c14ed35fdb835bf6bcddd68140bfb {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.WXS.A.hg38 C3L-02546 LSCC WXS tissue_normal CPT0112660006 549d8dfc-90ff-4c2c-9306-c4b24ee1c81d_wxs_gdc_realn.bam 31156833841 BAM harmonized CPTAC3 21e416cb-55c7-4085-b3a1-674f7f349e61 adba699c35d7e39f32f2bddf72b49ec6 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02546.WXS.N C3L-02546 LSCC WXS blood_normal CPT0115180002 CPT0115180002.WholeExome.RP-1303.bam 27967346113 BAM aligned CPTAC3 c98a9bc4-9e4d-42e0-85f7-824dca616f38 1313a7f7c37d2d8dfc6561edfdd3b527 {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02546.WXS.N.hg38 C3L-02546 LSCC WXS blood_normal CPT0115180002 800c8094-c41a-48ff-8af9-955d58e3db66_wxs_gdc_realn.bam 38253659834 BAM harmonized CPTAC3 0719d8d5-91a8-45b2-8bd3-6417ae7b6797 06c35043f07e9d12763e9a8a1f686545 {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02546.WXS.T C3L-02546 LSCC WXS tumor CPT0112650009 CPT0112650009.WholeExome.RP-1303.bam 26708695938 BAM aligned CPTAC3 6fc29096-99aa-497e-aabe-33bd01fbbe20 70233b0b008df5df3846d72898358bd1 {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor"} -C3L-02546.WXS.T.hg38 C3L-02546 LSCC WXS tumor CPT0112650009 4df9fe66-df3a-4c95-9e8a-99ff3c3ef043_wxs_gdc_realn.bam 37307837135 BAM harmonized CPTAC3 65166d23-2a24-4924-b728-c09e4279aa41 e60fd6f42140962bd13d02cbe9c5136f {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor"} -C3L-02549.MethArray.Green.A C3L-02549 LUAD Methylation_Array tissue_normal CPT0113220009 203027380028_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 1206d7ca-08fd-4f5e-a05f-f59fae9ca54b 73f03101e41c82f86ecc24d02d986b0b {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.MethArray.Green.T C3L-02549 LUAD Methylation_Array tumor CPT0113210009 202234380061_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 99ea2c91-553b-4a23-8fa6-ce9b7ead37c1 0f055deab9b6e00e97d72568f7aafa20 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor"} -C3L-02549.MethArray.Red.A C3L-02549 LUAD Methylation_Array tissue_normal CPT0113220009 203027380028_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 479e9ccd-0248-4047-bd52-57709013a024 8e2b4490ead3d64730202641de960521 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.MethArray.Red.T C3L-02549 LUAD Methylation_Array tumor CPT0113210009 202234380061_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 b8d081de-f927-47db-9ec6-90a6c22d8fc5 e3afb635c15bb29c7406ae1d2438bfb3 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor"} -C3L-02549.miRNA-Seq.A.hg38 C3L-02549 LUAD miRNA-Seq tissue_normal CPT0113220006 46a975c6-189c-4f8d-857a-59b6faa9202d_mirnaseq_gdc_realn.bam 295987581 BAM harmonized CPTAC3 827a7897-d593-4bc3-8931-f1b13956de57 e9c24decd500574872cdf902b9bfe451 {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.miRNA-Seq.S20_L007_R1.A C3L-02549 LUAD miRNA-Seq tissue_normal CPT0113220006 181108_UNC31-K00269_0162_AH255GBBXY_TATAAT_S20_L007_R1_001.unaln.bam 274582437 BAM S20_L007_R1 unaligned CPTAC3 9b310a16-9170-4d9a-8d48-70388307fdb7 ec8be03491a21f0f9411f061817fbdfb {"aliquot_tag": "ALQ_2c9506d3", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.miRNA-Seq.S37_L002_R1.T C3L-02549 LUAD miRNA-Seq tumor CPT0113210006 181113_UNC31-K00269_0164_AH23NNBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 196286023 BAM S37_L002_R1 unaligned CPTAC3 8a724441-d129-45e4-bce4-28740919428e cd7a750ce3becbfef9f3c0e1eed43df0 {"aliquot_tag": "ALQ_6b357c03", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02549.miRNA-Seq.T.hg38 C3L-02549 LUAD miRNA-Seq tumor CPT0113210006 be849fd7-d6e1-4b3d-9705-8d31cde89006_mirnaseq_gdc_realn.bam 213985898 BAM harmonized CPTAC3 a1319221-6c6c-4469-a95a-194ad134e4e8 d2bd05e39e307cd968649018835cb429 {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor"} -C3L-02549.RNA-Seq.chimeric.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.chimeric.gdc_realn.bam 64061927 BAM chimeric harmonized CPTAC3 c379f5d2-ddfd-4b64-93d5-aac7f297aace f78a03420b792c3ef549f17b711e614b {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.RNA-Seq.chimeric.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.chimeric.gdc_realn.bam 61938579 BAM chimeric harmonized CPTAC3 76d99934-b3c2-4d88-96a7-268b0224a617 9c2bf274b29e975f9fa6efbac2db1e6f {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor"} -C3L-02549.RNA-Seq.genomic.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.genomic.gdc_realn.bam 8325086097 BAM genomic harmonized CPTAC3 647d94d2-adc9-4d85-a60d-75c4c71006cd 96ac394d40f38adac48f7ca63dfaaa7a {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.RNA-Seq.genomic.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.genomic.gdc_realn.bam 8302019673 BAM genomic harmonized CPTAC3 3e5dee2e-ec64-4db7-b892-5d6413f9b13b 78f45e7a9c816188e38cd5221de01460 {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor"} -C3L-02549.RNA-Seq.S15_L004_R1.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R1_001.fastq.gz 3712777353 FASTQ S15_L004_R1 unaligned CPTAC3 ad1ac161-791e-426b-abcb-d564884c0d86 dca819c9f568e5371c35a7d4689683be {"aliquot_tag": "ALQ_6b357c03", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02549.RNA-Seq.S15_L004_R2.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R2_001.fastq.gz 4231846917 FASTQ S15_L004_R2 unaligned CPTAC3 0267044c-e819-411f-8ff3-698a68b20d3a 0d8aa07a64fe0213b37abba8f861a7c2 {"aliquot_tag": "ALQ_6b357c03", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02549.RNA-Seq.S7_L002_R1.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R1_001.fastq.gz 4048299200 FASTQ S7_L002_R1 unaligned CPTAC3 82bbca47-74e7-4528-8592-a59273cbc3bc 25334d863410b560f2bd5b72bbad009e {"aliquot_tag": "ALQ_2c9506d3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.RNA-Seq.S7_L002_R2.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R2_001.fastq.gz 4378753388 FASTQ S7_L002_R2 unaligned CPTAC3 a7de7866-6449-46b9-8591-faa0c00950cd cbc42bb8cdb306196157a940f44a9a7f {"aliquot_tag": "ALQ_2c9506d3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.RNA-Seq.transcriptome.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.transcriptome.gdc_realn.bam 10385876066 BAM transcriptome harmonized CPTAC3 2a5207fa-9a45-4a59-9a41-59e525717a1c 8beec219e4a6528f0d0d34e8ee0f9fa2 {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.RNA-Seq.transcriptome.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.transcriptome.gdc_realn.bam 11275396717 BAM transcriptome harmonized CPTAC3 e5949f5b-a85b-4684-b20b-56bfe0502736 dc81cae6801ecdb30e0c5595dad2d296 {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor"} -C3L-02549.WGS.A C3L-02549 LUAD WGS tissue_normal CPT0113220009 CPT0113220009.WholeGenome.RP-1303.bam 56469375027 BAM aligned CPTAC3 51a51128-7806-47c9-a968-3d8599ccf050 182789f8ff8dad136baf5596f317e1b2 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.WGS.A.hg38 C3L-02549 LUAD WGS tissue_normal CPT0113220009 d7dd9bcd-738a-4c20-8a7f-26ab1b436806_wgs_gdc_realn.bam 82295251947 BAM harmonized CPTAC3 e2fb6f3a-ddea-4285-8092-6355faa35b3d 90c0bf04822da9b7adac72d72f1f27c5 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.WGS.N C3L-02549 LUAD WGS blood_normal CPT0115250002 CPT0115250002.WholeGenome.RP-1303.bam 61417301387 BAM aligned CPTAC3 dfa069c3-7fea-4fb3-834b-efdd22993402 d8c7ddce80678ac000fa2e51001b9b7b {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02549.WGS.N.hg38 C3L-02549 LUAD WGS blood_normal CPT0115250002 3993fcff-1eb7-4269-b65d-17692a77b538_wgs_gdc_realn.bam 88723889621 BAM harmonized CPTAC3 56355cf3-e713-4f84-8341-34a831669dce 8f4507e6242e8e3a3c5332f74f97e627 {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02549.WGS.T C3L-02549 LUAD WGS tumor CPT0113210009 CPT0113210009.WholeGenome.RP-1303.bam 65125394788 BAM aligned CPTAC3 3278a3a8-c2d8-40c1-9f9f-d493ebcdd7c8 d54def28023a069675f95075b94774ca {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor"} -C3L-02549.WGS.T.hg38 C3L-02549 LUAD WGS tumor CPT0113210009 277a56c0-5e19-4292-951f-6b10ac741447_wgs_gdc_realn.bam 96152277766 BAM harmonized CPTAC3 c7b01188-7297-430d-bf6e-03af64176550 4933132a0ab68e6e24c287a834154e20 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor"} -C3L-02549.WXS.A C3L-02549 LUAD WXS tissue_normal CPT0113220009 CPT0113220009.WholeExome.RP-1303.bam 37851517018 BAM aligned CPTAC3 32b5ff90-7f02-4719-9e58-27d9fd4144c9 e28a14f2c2ee3ee341d3530550ead5a7 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.WXS.A.hg38 C3L-02549 LUAD WXS tissue_normal CPT0113220009 d7dd9bcd-738a-4c20-8a7f-26ab1b436806_wxs_gdc_realn.bam 52087894702 BAM harmonized CPTAC3 00eb892c-da5f-4e69-8c0b-6e2c1502f62c 209163375b1612edad4cbd5dab97182a {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02549.WXS.N C3L-02549 LUAD WXS blood_normal CPT0115250002 CPT0115250002.WholeExome.RP-1303.bam 24423382580 BAM aligned CPTAC3 bd38144f-29e0-416b-8ce0-0153abe09838 eb0e3b43f401facd9fb0f1e799eaffaa {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02549.WXS.N.hg38 C3L-02549 LUAD WXS blood_normal CPT0115250002 3993fcff-1eb7-4269-b65d-17692a77b538_wxs_gdc_realn.bam 33794028135 BAM harmonized CPTAC3 ff823df2-eaf4-4f3d-ab59-6036bc57a13a 1e3c40505c09478d5b361aa975062110 {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02549.WXS.T C3L-02549 LUAD WXS tumor CPT0113210009 CPT0113210009.WholeExome.RP-1303.bam 29412612595 BAM aligned CPTAC3 b39832da-748c-4b25-8266-d26841564656 15d214ebe7b68a4a46cfc735c120629e {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor"} -C3L-02549.WXS.T.hg38 C3L-02549 LUAD WXS tumor CPT0113210009 277a56c0-5e19-4292-951f-6b10ac741447_wxs_gdc_realn.bam 40890473336 BAM harmonized CPTAC3 37089f84-3ea7-46b6-9bd3-bc0246e31969 bda4e0d234b59928c2a02c19b83e8e56 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor"} -C3L-02551.MethArray.Green.A C3L-02551 CCRCC Methylation_Array tissue_normal CPT0161540006 204930640108_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 86e69bd3-7da4-4235-a7b9-1fba4745cd33 3b722b058fa998d6e98d7b6c146af433 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.MethArray.Green.T C3L-02551 CCRCC Methylation_Array tumor CPT0161510006 203219650221_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 028453b2-a0ad-4a9f-bbc8-4f5838790ffb 28352af3577a1787a3e13ef68fd5c9af {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor"} -C3L-02551.MethArray.Red.A C3L-02551 CCRCC Methylation_Array tissue_normal CPT0161540006 204930640108_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 5fb842cf-00ed-491c-938d-8254925731ac 2a4c7204d47d10e5838e6befa2e2e809 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.MethArray.Red.T C3L-02551 CCRCC Methylation_Array tumor CPT0161510006 203219650221_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 ffddadfb-3c50-4229-901b-4fb9e340674e a76a0313d963a4ec09bab1a9c28f2d60 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor"} -C3L-02551.miRNA-Seq.A.hg38 C3L-02551 CCRCC miRNA-Seq tissue_normal CPT0161540009 2c6a6d75-da08-48d1-8da8-4e63edb8b0c7_mirnaseq_gdc_realn.bam 289511418 BAM harmonized CPTAC3 22a1c70b-22e7-4b9c-8f50-d9fb1d351dc1 d2376668d13b3b6a7bced07b41ce5baa {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.miRNA-Seq.S27_L002_R1.A C3L-02551 CCRCC miRNA-Seq tissue_normal CPT0161540009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L002_R1_001.unaln.bam 264755414 BAM S27_L002_R1 unaligned CPTAC3 5e40fa39-327b-4d59-b84f-622a11e315cb 40836e6309dd9932c835dcfd0f49757c {"aliquot_tag": "ALQ_b335c66a", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.miRNA-Seq.S31_L003_R1.T C3L-02551 CCRCC miRNA-Seq tumor CPT0161510009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L003_R1_001.unaln.bam 149020117 BAM S31_L003_R1 unaligned CPTAC3 0ad0b01b-b2d9-4702-9214-fc8e457644ae 89864c60c9e0ab7e03937383557fae5f {"aliquot_tag": "ALQ_7bd5491a", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02551.miRNA-Seq.T.hg38 C3L-02551 CCRCC miRNA-Seq tumor CPT0161510009 7c0e1ae8-fad8-469b-90e4-550416ffc3be_mirnaseq_gdc_realn.bam 163223991 BAM harmonized CPTAC3 72c8339d-7572-4a12-9527-215a29f56271 7d75d22b55436dac83a39a8cf05bd59a {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor"} -C3L-02551.RNA-Seq.chimeric.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.chimeric.gdc_realn.bam 71811535 BAM chimeric harmonized CPTAC3 8dd12b1b-997c-40e5-9cd2-539ea9018b07 2c8de3a0c472920790df874b649881c9 {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.RNA-Seq.chimeric.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.chimeric.gdc_realn.bam 121740040 BAM chimeric harmonized CPTAC3 07c8f8b5-8c06-4afd-8c8f-a1861c2c0166 104e8285eb77bddf36d7236f39a689ba {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor"} -C3L-02551.RNA-Seq.genomic.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.genomic.gdc_realn.bam 10673736308 BAM genomic harmonized CPTAC3 f170f591-0d2e-46b9-b8cc-22bd53a7d32c 6fcc00a3eb76ff6e8b3b93d9c0954e1f {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.RNA-Seq.genomic.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.genomic.gdc_realn.bam 8665124855 BAM genomic harmonized CPTAC3 7c7e310d-1059-4248-a0b3-2762fc88e5b0 17e68df521614f5b21de80921e63c1fe {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor"} -C3L-02551.RNA-Seq.S16_L006_R1.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R1_001.fastq.gz 3677153793 FASTQ S16_L006_R1 unaligned CPTAC3 fb3087ed-d401-4e42-b2a1-1cbe372e5e5a 1ab23bcf92e065f135e72d57a92b29c8 {"aliquot_tag": "ALQ_7bd5491a", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02551.RNA-Seq.S16_L006_R2.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R2_001.fastq.gz 3897429232 FASTQ S16_L006_R2 unaligned CPTAC3 29354421-b9e4-4e98-bdec-82288547acd9 1ea0f3e50cbae7fb0816fff80ea64a3b {"aliquot_tag": "ALQ_7bd5491a", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02551.RNA-Seq.S24_L008_R1.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R1_001.fastq.gz 4428833267 FASTQ S24_L008_R1 unaligned CPTAC3 910966f5-e33e-4593-9c02-8e8c24b9278d 53180508e96e0e9c00dbf0447628b033 {"aliquot_tag": "ALQ_b335c66a", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.RNA-Seq.S24_L008_R2.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R2_001.fastq.gz 4934089489 FASTQ S24_L008_R2 unaligned CPTAC3 d4324acb-ef41-4cc6-a5b5-c5512b8dee91 52f22706ca928b9e23ec34764d311dd3 {"aliquot_tag": "ALQ_b335c66a", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.RNA-Seq.transcriptome.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.transcriptome.gdc_realn.bam 11733222965 BAM transcriptome harmonized CPTAC3 3541513b-ee89-4b5e-9501-5968bca78a49 dd04a738ce0eb298a6f533f7ccde3885 {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.RNA-Seq.transcriptome.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.transcriptome.gdc_realn.bam 9881212406 BAM transcriptome harmonized CPTAC3 3dc12408-1c1e-4c81-af19-c29f290cb388 3eff552ac3fe9362513ef9b5f1825815 {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor"} -C3L-02551.scRNA-Seq.S5_L004_R1.T C3L-02551 CCRCC scRNA-Seq tumor CPT0161510004 20220404_WUSTL_TWHG-CPT0161510004-Y1N1Z1_1Bmn1_1_TCCGTTGGAT+GCGAGAACGT_S5_L004_R1_001.fastq.gz 6168927560 FASTQ S5_L004_R1 unaligned CPTAC3 f2739b71-d78c-4c17-939d-d87ee2d90fc9 ef533b2a925c530ab56201cdb4904dd4 {"aliquot_tag": "ALQ_56435a7", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02551.scRNA-Seq.S5_L004_R2.T C3L-02551 CCRCC scRNA-Seq tumor CPT0161510004 20220404_WUSTL_TWHG-CPT0161510004-Y1N1Z1_1Bmn1_1_TCCGTTGGAT+GCGAGAACGT_S5_L004_R2_001.fastq.gz 22567672709 FASTQ S5_L004_R2 unaligned CPTAC3 28fa6680-7d30-4483-896c-87130f5be35a 398de2f32ab674281d186341c1bbef3e {"aliquot_tag": "ALQ_56435a7", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02551.WGS.A C3L-02551 CCRCC WGS tissue_normal CPT0161540006 CPT0161540006.WholeGenome.RP-1303.bam 77375941138 BAM aligned CPTAC3 0c0bacce-441c-4cfc-9b4e-f1217cf96425 c3925804412d0d30eceaf0096522ee69 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.WGS.A.hg38 C3L-02551 CCRCC WGS tissue_normal CPT0161540006 3e963853-6bb2-4a64-b030-c8072ed444c0_wgs_gdc_realn.bam 113037172321 BAM harmonized CPTAC3 3bfcb0ad-55a4-4b46-bc88-4970e01c162a 4471251e15b1cefe8ea705d7c4b1bc28 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.WGS.N C3L-02551 CCRCC WGS blood_normal CPT0162510002 CPT0162510002.WholeGenome.RP-1303.bam 56656702955 BAM aligned CPTAC3 fc2146b7-d99f-421f-a8f6-5201856a120e 14d82a2e14627cfb87bfb1ab1a255f4b {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02551.WGS.N.hg38 C3L-02551 CCRCC WGS blood_normal CPT0162510002 1fb328fe-22e7-498e-b000-3dc3d9c718fa_wgs_gdc_realn.bam 82896023601 BAM harmonized CPTAC3 c3d40404-9760-45c8-9fda-0efe44bd0513 e34c3b94e8f15fd8d212eb9cc41f4654 {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02551.WGS.T C3L-02551 CCRCC WGS tumor CPT0161510006 CPT0161510006.WholeGenome.RP-1303.bam 52769924062 BAM aligned CPTAC3 8a13c646-a19f-44fc-b20d-22d78e19beec b71aa4ec43d1340db7bfa39b073de909 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor"} -C3L-02551.WGS.T.hg38 C3L-02551 CCRCC WGS tumor CPT0161510006 525cb672-9543-414c-9d01-9bb1f81ae753_wgs_gdc_realn.bam 77848821261 BAM harmonized CPTAC3 eef8dd9f-3421-4a87-8334-f293485bbadd 7cb201f0348921105aed4d61ee29ccd9 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor"} -C3L-02551.WXS.A C3L-02551 CCRCC WXS tissue_normal CPT0161540006 CPT0161540006.WholeExome.RP-1303.bam 22844200998 BAM aligned CPTAC3 72685db9-3b0f-4a66-8f47-97310523b8f9 ba16a4a555873885a513754300d09699 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.WXS.A.hg38 C3L-02551 CCRCC WXS tissue_normal CPT0161540006 3e963853-6bb2-4a64-b030-c8072ed444c0_wxs_gdc_realn.bam 32644163112 BAM harmonized CPTAC3 e9ccff09-1f15-483b-9453-b4e3827eb004 3e1c767cf1a3c8d4356edb8c10dd3ff6 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02551.WXS.N C3L-02551 CCRCC WXS blood_normal CPT0162510002 CPT0162510002.WholeExome.RP-1303.bam 23619374148 BAM aligned CPTAC3 e4621163-5a1a-4331-aa2d-0166d9277283 e8f657a0607a360029a276095d111c05 {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02551.WXS.N.hg38 C3L-02551 CCRCC WXS blood_normal CPT0162510002 1fb328fe-22e7-498e-b000-3dc3d9c718fa_wxs_gdc_realn.bam 32977526671 BAM harmonized CPTAC3 82cc5582-c9a8-4039-80b5-c96a7ba0dd65 25a32aae69813de6e25d902bf043a40d {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02551.WXS.T C3L-02551 CCRCC WXS tumor CPT0161510006 CPT0161510006.WholeExome.RP-1303.bam 35374962973 BAM aligned CPTAC3 637ad2ab-f705-4b36-9e5c-3ed4c99131f2 f865acb2f2ec3ebb2c5839599813fccc {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor"} -C3L-02551.WXS.T.hg38 C3L-02551 CCRCC WXS tumor CPT0161510006 525cb672-9543-414c-9d01-9bb1f81ae753_wxs_gdc_realn.bam 48317653627 BAM harmonized CPTAC3 14626088-c896-4b8a-ba97-1fd0db30eb2e de256ce73450f6607554ec05a271fab2 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor"} -C3L-02552.MethArray.Green.A C3L-02552 LSCC Methylation_Array tissue_normal CPT0112600006 203219650202_R05C01_Grn.idat 13676218 IDAT Green NA CPTAC3 69af818a-2cb3-4a51-ac3f-b3e9bb7a26cf 8ee839b9ffab5a51a4dae8c3380b0275 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.MethArray.Green.T C3L-02552 LSCC Methylation_Array tumor CPT0112580006 203219640095_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f9d8e091-aa70-4aac-b08c-264045b0322e 94dd73689705f91a2b21705da1a6d85e {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor"} -C3L-02552.MethArray.Red.A C3L-02552 LSCC Methylation_Array tissue_normal CPT0112600006 203219650202_R05C01_Red.idat 13676218 IDAT Red NA CPTAC3 054c1bfe-8995-4b3f-996a-7d7bbbe7a3f6 120d8b182d58be8fe746e2918ecf3a71 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.MethArray.Red.T C3L-02552 LSCC Methylation_Array tumor CPT0112580006 203219640095_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 487489b7-3e15-4be8-96d6-1f2ace2e8ea0 16e683ae8c04ae782e1fc7df9164c5cf {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor"} -C3L-02552.miRNA-Seq.A.hg38 C3L-02552 LSCC miRNA-Seq tissue_normal CPT0112600009 0e0b8f33-12f0-4a3c-ab51-d63f7d2f1adc_mirnaseq_gdc_realn.bam 233633749 BAM harmonized CPTAC3 938ea39c-f026-47a7-ae05-41fea460c8e5 1c0bc011a0e93fcfebd6baf28ecb332a {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.miRNA-Seq.S11_L001_R1.T C3L-02552 LSCC miRNA-Seq tumor CPT0112580009 181219_UNC31-K00269_0173_BHYGJJBBXX_GGCTAC_S11_L001_R1_001.unaln.bam 243524827 BAM S11_L001_R1 unaligned CPTAC3 597be250-5a94-471f-930a-d4b0813eed76 695b4bb86ca1549fb9ea6491cf925172 {"aliquot_tag": "ALQ_4de838ef", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02552.miRNA-Seq.S35_L002_R1.A C3L-02552 LSCC miRNA-Seq tissue_normal CPT0112600009 181219_UNC31-K00269_0173_BHYGJJBBXX_CCAACA_S35_L002_R1_001.unaln.bam 208095976 BAM S35_L002_R1 unaligned CPTAC3 ccfb6a00-24fd-4df0-8091-c459daf764dc f8d5e93a942220fdb723835fced26c5e {"aliquot_tag": "ALQ_fb0c0180", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.miRNA-Seq.T.hg38 C3L-02552 LSCC miRNA-Seq tumor CPT0112580009 1190a3c0-5849-43cc-bc20-25f5d7e55c9d_mirnaseq_gdc_realn.bam 273157407 BAM harmonized CPTAC3 2f24531e-76d0-43a9-ba77-92e27e45799c f72a9b3057c68da2a146dd5c423f2094 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor"} -C3L-02552.RNA-Seq.chimeric.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.chimeric.gdc_realn.bam 25529752 BAM chimeric harmonized CPTAC3 ba788fdf-f2ff-4559-bb80-9da288c243f9 6d5dd16982b88121955830b96bf25893 {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.RNA-Seq.chimeric.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.chimeric.gdc_realn.bam 32668887 BAM chimeric harmonized CPTAC3 cb9ca05f-8ee1-4a59-8de8-1b97e28a1b09 06ea03ce3dc0b67f507220f17f6257f2 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor"} -C3L-02552.RNA-Seq.genomic.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.genomic.gdc_realn.bam 8675454058 BAM genomic harmonized CPTAC3 f0ced0d0-7b25-40f9-bade-98f9c67b985f 3b7f18acf29d297adea50338394bde5f {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.RNA-Seq.genomic.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.genomic.gdc_realn.bam 10624871745 BAM genomic harmonized CPTAC3 43fd41f1-2312-46d3-bb0b-04af4eb130bb aadfea54067c795eaed988956f808cd5 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor"} -C3L-02552.RNA-Seq.S20_L005_R1.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3813348378 FASTQ S20_L005_R1 unaligned CPTAC3 c35cc88e-f3b6-408e-9e9c-f00aa6607b53 26c2a076d0866776e4ff2661d890a50a {"aliquot_tag": "ALQ_fb0c0180", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.RNA-Seq.S20_L005_R2.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3985197098 FASTQ S20_L005_R2 unaligned CPTAC3 1564591b-36f6-4214-8c07-af3fd3eb641a 1aa9378bb8fb1d57861fe893cdb12057 {"aliquot_tag": "ALQ_fb0c0180", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.RNA-Seq.S27_L007_R1.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R1_001.fastq.gz 4477909839 FASTQ S27_L007_R1 unaligned CPTAC3 854f3883-871e-4852-83ec-c2b27d8f37da 2cb8d838f42e25ed009b33fe3f8f0dda {"aliquot_tag": "ALQ_4de838ef", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02552.RNA-Seq.S27_L007_R2.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R2_001.fastq.gz 4955109631 FASTQ S27_L007_R2 unaligned CPTAC3 85099c50-e631-4f61-8413-f75281338558 812f2faa0668f5b9ba83cdee32e63bab {"aliquot_tag": "ALQ_4de838ef", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02552.RNA-Seq.transcriptome.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.transcriptome.gdc_realn.bam 10593616436 BAM transcriptome harmonized CPTAC3 0c7cb40d-3985-40c4-89e3-4aa9ec0d45c3 819202ccd73adec06179469c1c3fd618 {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.RNA-Seq.transcriptome.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.transcriptome.gdc_realn.bam 13780411340 BAM transcriptome harmonized CPTAC3 b2ad3a40-28cf-4c80-ab47-4abc7e9b25c1 a13680da271e388b0d458966599a44a1 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor"} -C3L-02552.WGS.A C3L-02552 LSCC WGS tissue_normal CPT0112600006 CPT0112600006.WholeGenome.RP-1303.bam 54053928438 BAM aligned CPTAC3 87eac3b2-f9d0-466d-afca-89966e08df14 ac9091d1273eea0548a537c9684435ba {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.WGS.A.hg38 C3L-02552 LSCC WGS tissue_normal CPT0112600006 b5bc65fe-e820-49e0-b4d6-0f42c7a12b5e_wgs_gdc_realn.bam 78566617374 BAM harmonized CPTAC3 1351618d-c62e-4990-b9b4-8842d49e2c82 fa0c8ad6337def39ef2fa37c26769043 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.WGS.N C3L-02552 LSCC WGS blood_normal CPT0115170002 CPT0115170002.WholeGenome.RP-1303.bam 57308231987 BAM aligned CPTAC3 1642df92-b39c-4239-a1d4-f9bc92e5baa9 8ba5e5b9095680cf72af2fa15e4c0e3a {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02552.WGS.N.hg38 C3L-02552 LSCC WGS blood_normal CPT0115170002 ab4e3671-ff37-4ec3-8a7a-9d46b33633e3_wgs_gdc_realn.bam 82568662923 BAM harmonized CPTAC3 16c519d7-2727-4650-a5ca-09a534507d21 93d687e230d733eecba6ef9a0056441b {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02552.WGS.T C3L-02552 LSCC WGS tumor CPT0112580006 CPT0112580006.WholeGenome.RP-1303.bam 58404039485 BAM aligned CPTAC3 fabcb743-72d5-4151-b7e8-7df4d8e949b4 4d3c374ae49a09861c44916c48474acf {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor"} -C3L-02552.WGS.T.hg38 C3L-02552 LSCC WGS tumor CPT0112580006 6890c26c-2da6-4867-aece-58b9af97bd4d_wgs_gdc_realn.bam 84727852338 BAM harmonized CPTAC3 02d84f80-c543-4ade-9ccf-ebc449d13fa1 729f76c76aabb1fdf83c7976d1c97846 {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor"} -C3L-02552.WXS.A C3L-02552 LSCC WXS tissue_normal CPT0112600006 CPT0112600006.WholeExome.RP-1303.bam 22784506119 BAM aligned CPTAC3 01b6eac5-9199-4fe3-88da-6e10e532c726 ea81dd3a972462432021888e4633df7e {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.WXS.A.hg38 C3L-02552 LSCC WXS tissue_normal CPT0112600006 b5bc65fe-e820-49e0-b4d6-0f42c7a12b5e_wxs_gdc_realn.bam 30780873145 BAM harmonized CPTAC3 9f500a8b-9ee8-4e85-82de-0ef7a8ac035b 0b88d0cbbfcd1bbf81aab457376a9a08 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02552.WXS.N C3L-02552 LSCC WXS blood_normal CPT0115170002 CPT0115170002.WholeExome.RP-1303.bam 21970921299 BAM aligned CPTAC3 ee43da8f-633a-4b55-8e84-95ca092abb31 f1ea17b1441b5868af12433db097d8df {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02552.WXS.N.hg38 C3L-02552 LSCC WXS blood_normal CPT0115170002 ab4e3671-ff37-4ec3-8a7a-9d46b33633e3_wxs_gdc_realn.bam 29849029135 BAM harmonized CPTAC3 cea1e94c-03a7-498c-ba3b-86b4eba52707 b761bbb427302aeba8fdd67ac7c1d77b {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02552.WXS.T C3L-02552 LSCC WXS tumor CPT0112580006 CPT0112580006.WholeExome.RP-1303.bam 23983363488 BAM aligned CPTAC3 82fd2835-57a7-4fb4-9ebf-5e5d010d7d9a 3ea1eb958029545b489597a89ed375c6 {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor"} -C3L-02552.WXS.T.hg38 C3L-02552 LSCC WXS tumor CPT0112580006 6890c26c-2da6-4867-aece-58b9af97bd4d_wxs_gdc_realn.bam 33519648270 BAM harmonized CPTAC3 fdfa0afe-c2ce-4cf7-9a74-78cebde5d447 1ca12f4870312da74da16acb780e2cff {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor"} -C3L-02553.MethArray.Green.T C3L-02553 CCRCC Methylation_Array tumor CPT0161790006 203219640068_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 636786a6-b8e7-4627-8f66-55ba344c0adb a613cc7be39088ce22cce759e2312dc8 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor"} -C3L-02553.MethArray.Red.T C3L-02553 CCRCC Methylation_Array tumor CPT0161790006 203219640068_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 0bcbcf3a-fd38-457a-826d-4fe492fdc4c2 7fb8573f51acec71d8ceee353d089ba2 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor"} -C3L-02553.miRNA-Seq.S32_L003_R1.T C3L-02553 CCRCC miRNA-Seq tumor CPT0161790009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L003_R1_001.unaln.bam 193130654 BAM S32_L003_R1 unaligned CPTAC3 cb488837-bef1-49e5-b542-05abe19fa38c 3b8bc29fe8f04c492f42c2f38e3bd5f2 {"aliquot_tag": "ALQ_66da3d0", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02553.miRNA-Seq.T.hg38 C3L-02553 CCRCC miRNA-Seq tumor CPT0161790009 481880fe-a0ba-4ea1-9dd8-d701a1dbc771_mirnaseq_gdc_realn.bam 214059322 BAM harmonized CPTAC3 9b5fa094-85c4-4e00-8b43-294fb14e3eb5 a272e94c40fa2cc64ce76c739c569232 {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor"} -C3L-02553.RNA-Seq.chimeric.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.chimeric.gdc_realn.bam 120191860 BAM chimeric harmonized CPTAC3 85553214-f1ce-4779-9848-09bf89c80b99 bdb9121d04cc1fbc2f7c10e4b033fe8b {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor"} -C3L-02553.RNA-Seq.genomic.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.genomic.gdc_realn.bam 8174395520 BAM genomic harmonized CPTAC3 b7a14d21-ff85-4d86-aa82-dc4a33fd404c 1e9b53f27d218135d2110d32fed56d66 {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor"} -C3L-02553.RNA-Seq.S15_L006_R1.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R1_001.fastq.gz 3840317711 FASTQ S15_L006_R1 unaligned CPTAC3 f42869fb-76c2-4126-98b5-13345c6a056e a637e79554c64e6ec41017b021c51385 {"aliquot_tag": "ALQ_66da3d0", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02553.RNA-Seq.S15_L006_R2.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R2_001.fastq.gz 4087460956 FASTQ S15_L006_R2 unaligned CPTAC3 123e166f-c0f7-437f-a25c-9df6da0eba4b 9468a86d30d8c5b2ddd081b8c5b11941 {"aliquot_tag": "ALQ_66da3d0", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02553.RNA-Seq.transcriptome.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.transcriptome.gdc_realn.bam 11298942866 BAM transcriptome harmonized CPTAC3 c3c97092-70cf-4c8f-8d64-29600b77d5a9 c8ec72154bd2955b779d28a0e5b38626 {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor"} -C3L-02553.WGS.N C3L-02553 CCRCC WGS blood_normal CPT0162560002 CPT0162560002.WholeGenome.RP-1303.bam 70861150095 BAM aligned CPTAC3 695f95df-7a51-478b-b2d3-f8532c24cec0 1dee42692d6f103f1a1f2fc899bbca0f {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02553.WGS.N.hg38 C3L-02553 CCRCC WGS blood_normal CPT0162560002 46f72fde-bfa9-4473-b02e-2fcf6ba7e9ad_wgs_gdc_realn.bam 104396358325 BAM harmonized CPTAC3 87a421dd-8e22-4e24-8577-36ffc94a34d6 5f5be0560cad1747c82d28631adcf9cd {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02553.WGS.T C3L-02553 CCRCC WGS tumor CPT0161790006 CPT0161790006.WholeGenome.RP-1303.bam 68248904842 BAM aligned CPTAC3 0b5292ff-ae88-4716-84ce-4bf2ab755b82 0a62cf8a09dd8b8863c6f45e7ba523e0 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor"} -C3L-02553.WGS.T.hg38 C3L-02553 CCRCC WGS tumor CPT0161790006 23a9ef2a-8d08-481b-b9a9-5ec6080dc5a0_wgs_gdc_realn.bam 100174688675 BAM harmonized CPTAC3 ad647c91-1696-4512-849e-ceb2dcc939e5 35f62a1289bbf23a96406de7d53599f8 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor"} -C3L-02553.WXS.N C3L-02553 CCRCC WXS blood_normal CPT0162560002 CPT0162560002.WholeExome.RP-1303.bam 27336511093 BAM aligned CPTAC3 0e7f1cd6-3913-4823-a5b4-c1ac48a9189e d6fab0595e67d52cf2881049954f809b {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02553.WXS.N.hg38 C3L-02553 CCRCC WXS blood_normal CPT0162560002 46f72fde-bfa9-4473-b02e-2fcf6ba7e9ad_wxs_gdc_realn.bam 38479520042 BAM harmonized CPTAC3 0f9db919-f741-429b-9aa3-2eb4bfeb0eb0 01eb3d86af0fe1faa7b082d7b533016c {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02553.WXS.T C3L-02553 CCRCC WXS tumor CPT0161790006 CPT0161790006.WholeExome.RP-1303.bam 30487428077 BAM aligned CPTAC3 2a0c0916-5957-4563-acf7-db6d5e3a64e3 8722f4037957aa34ecb2a90628eb36fe {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor"} -C3L-02553.WXS.T.hg38 C3L-02553 CCRCC WXS tumor CPT0161790006 23a9ef2a-8d08-481b-b9a9-5ec6080dc5a0_wxs_gdc_realn.bam 41749626009 BAM harmonized CPTAC3 66c7c336-431d-4d20-88e0-227e0ea72f6b 952d3ed8591b232b666158a5856e2447 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor"} -C3L-02555.MethArray.Green.T C3L-02555 UCEC Methylation_Array tumor CPT0128370006 203220070217_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 534ea967-bbe5-4c38-b9f9-394826d36964 2bc76011a3a79f2d967fe1b96a91cd13 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor"} -C3L-02555.MethArray.Red.T C3L-02555 UCEC Methylation_Array tumor CPT0128370006 203220070217_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 893e59e0-23f2-4133-a480-8c34721c1fc4 7253d2b1aa4df33f7a0d2e4def4535f6 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor"} -C3L-02555.miRNA-Seq.S23_L004_R1.T C3L-02555 UCEC miRNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0176_AHYGLVBBXX_GAGTGG_S23_L004_R1_001.unaln.bam 223654278 BAM S23_L004_R1 unaligned CPTAC3 bc1f004f-1008-4d36-8d91-39f514305f2e 7a3d1f0e8119fac07d8ad8daf35f7674 {"aliquot_tag": "ALQ_331e148e", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02555.miRNA-Seq.T.hg38 C3L-02555 UCEC miRNA-Seq tumor CPT0128370009 06a76c30-395d-42a5-83df-728edc0fda05_mirnaseq_gdc_realn.bam 247777622 BAM harmonized CPTAC3 adcfc22e-0192-4b99-ad2f-fd566cd846f1 26a11975eb6f201fd2aed6fb5c4b1ec6 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.chimeric.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.chimeric.gdc_realn.bam 84608145 BAM chimeric harmonized CPTAC3 3ca42d26-c5d0-491d-9fe7-fa0b1aa86cbc 0dfb577ac191ab9cac2c3e05ddf64070 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.chimeric.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.chimeric.gdc_realn.bam 195093880 BAM chimeric harmonized CPTAC3 cf25bc9f-3a4a-4744-aefe-4f5f0f566e05 6b8d38eba1fa2f2fba90809ffb6dadb9 {"aliquot_tag": "ALQ_6e05d541", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.genomic.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.genomic.gdc_realn.bam 8307365796 BAM genomic harmonized CPTAC3 4da75c88-f92b-44c8-81be-8398b4a53fc9 12eec0e1eb1ebcfd8f07b3e4f6958822 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.genomic.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.genomic.gdc_realn.bam 8502624893 BAM genomic harmonized CPTAC3 469d7a01-e650-4326-8104-3f32dd0f049a d2a34a603884b5aba6b6f26eef65ce80 {"aliquot_tag": "ALQ_6e05d541", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.S19_R1.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R1_001.fastq.gz 4675218030 FASTQ S19_R1 unaligned CPTAC3 5fec198b-7e93-43a0-a011-38863cef4493 764cea8b7b496b27665d1c819ee9fc00 {"aliquot_tag": "ALQ_6e05d541", "sample": "S19", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.S19_R2.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R2_001.fastq.gz 4739616541 FASTQ S19_R2 unaligned CPTAC3 705718a5-26b1-4317-ac7e-b81672715aa7 6f4eaaf911481b5ad6b19a872309a303 {"aliquot_tag": "ALQ_6e05d541", "sample": "S19", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.S1_L001_R1.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3724233412 FASTQ S1_L001_R1 unaligned CPTAC3 db713eb3-15ae-4a94-aeab-bdca4eeba52d 0175608820bad1141ca4985460f5cc2f {"aliquot_tag": "ALQ_331e148e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.S1_L001_R2.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 3935640920 FASTQ S1_L001_R2 unaligned CPTAC3 69243744-6ba4-4e00-a51a-6e4189ad24c5 94f9fab35b44314363fb3ddd06606ccb {"aliquot_tag": "ALQ_331e148e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.transcriptome.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.transcriptome.gdc_realn.bam 9638455336 BAM transcriptome harmonized CPTAC3 3a39c50b-dcd7-40f9-b3a3-dd31ccb43cac aacae1ee53547a7532413f698d172556 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor"} -C3L-02555.RNA-Seq.transcriptome.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.transcriptome.gdc_realn.bam 3943878050 BAM transcriptome harmonized CPTAC3 a44f7df5-b5c6-4d39-bb7b-8099587a9d7b 27f41ad499de44f3af05bf0c4c9c3108 {"aliquot_tag": "ALQ_6e05d541", "gdc_sample_type": "Primary Tumor"} -C3L-02555.WGS.N C3L-02555 UCEC WGS blood_normal CPT0129420002 CPT0129420002.WholeGenome.RP-1303.bam 57666240904 BAM aligned CPTAC3 e2ebcbcc-ff64-4199-b35d-58971bbf9789 90ec2eb35cd64ab74a1a1b62fda3668f {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02555.WGS.N.hg38 C3L-02555 UCEC WGS blood_normal CPT0129420002 e14b2ac5-d3ba-432b-b415-9943d761bd25_wgs_gdc_realn.bam 84653929323 BAM harmonized CPTAC3 5a4876c8-413d-400b-b6f2-0d68e3a90181 c318d30cb059961c5399232f2a91a6b6 {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02555.WGS.T C3L-02555 UCEC WGS tumor CPT0128370006 CPT0128370006.WholeGenome.RP-1303.bam 55020507589 BAM aligned CPTAC3 88d22ef6-123f-490f-af6c-61ad5edbdd91 2a16b80ca7c0d6f5128900bb09939ea0 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor"} -C3L-02555.WGS.T.hg38 C3L-02555 UCEC WGS tumor CPT0128370006 871138fd-1695-41ca-92d1-2227be39c7b0_wgs_gdc_realn.bam 80186591055 BAM harmonized CPTAC3 b81f5623-5b7e-41d0-aae9-3cb5f8fefdc9 ed6c55c3ecf1122fbe2aba8c36efb452 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor"} -C3L-02555.WXS.N C3L-02555 UCEC WXS blood_normal CPT0129420002 CPT0129420002.WholeExome.RP-1303.bam 28640816600 BAM aligned CPTAC3 93556a3a-58cc-46ff-b560-8df594b1f998 2c6e265d4dc597120fc180aec699c5ae {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02555.WXS.N.hg38 C3L-02555 UCEC WXS blood_normal CPT0129420002 e14b2ac5-d3ba-432b-b415-9943d761bd25_wxs_gdc_realn.bam 40255296311 BAM harmonized CPTAC3 3b266e76-0bdc-4e2d-8d17-011f708cd741 a94b511d5184a650bae2d8722d7ea844 {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02555.WXS.T C3L-02555 UCEC WXS tumor CPT0128370006 CPT0128370006.WholeExome.RP-1303.bam 26345856128 BAM aligned CPTAC3 4e398596-fbcc-405a-8007-380ae83aa208 87b64a79ad8476173087012120a6e634 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor"} -C3L-02555.WXS.T.hg38 C3L-02555 UCEC WXS tumor CPT0128370006 871138fd-1695-41ca-92d1-2227be39c7b0_wxs_gdc_realn.bam 36265183470 BAM harmonized CPTAC3 10cb4cbd-b69e-46d7-a305-f11f8cb44e5d db7266777688f2a7fe0ebedf178088fb {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor"} -C3L-02556.MethArray.Green.A C3L-02556 CCRCC Methylation_Array tissue_normal CPT0161840006 204930630040_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 bcd47d31-7227-4cef-8fb2-e12444e62144 cbaade29803561be2a12ba6457b8091e {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.MethArray.Green.T C3L-02556 CCRCC Methylation_Array tumor CPT0161820011 203219650156_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f3c8b124-9914-4cc7-81a6-1cd84bc8873a 0611d87a9e8344dc8c581698e4b9fdce {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor"} -C3L-02556.MethArray.Red.A C3L-02556 CCRCC Methylation_Array tissue_normal CPT0161840006 204930630040_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 68309605-eb5b-4125-b443-5b4ea2192ca5 89e3a198bf43323636181538d6d27c42 {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.MethArray.Red.T C3L-02556 CCRCC Methylation_Array tumor CPT0161820011 203219650156_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 98658235-70f2-48a1-8a77-47fdd71dcc1c 6a4d9a4b64713cde7250ded053c9a48a {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor"} -C3L-02556.miRNA-Seq.A.hg38 C3L-02556 CCRCC miRNA-Seq tissue_normal CPT0161840009 8d33f9c5-3c14-4040-894f-62a2898a6b37_mirnaseq_gdc_realn.bam 239963425 BAM harmonized CPTAC3 6f871282-16ca-4d26-9f3f-1e728a3df0c8 9cf219a53c3dad9bfb07b2af78149900 {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.miRNA-Seq.S23_L003_R1.T C3L-02556 CCRCC miRNA-Seq tumor CPT0161820009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L003_R1_001.unaln.bam 224869141 BAM S23_L003_R1 unaligned CPTAC3 67e0b0c9-3967-4b58-85e8-f629be62fefe 3b75767c76c6b06b9739ebd81eb632f4 {"aliquot_tag": "ALQ_80eb2014", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02556.miRNA-Seq.S28_L003_R1.A C3L-02556 CCRCC miRNA-Seq tissue_normal CPT0161840009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L003_R1_001.unaln.bam 219186432 BAM S28_L003_R1 unaligned CPTAC3 090be82d-7bac-4f63-a84e-829d3219210b e330c6f69c1f89ce9df67531f886a20e {"aliquot_tag": "ALQ_fabd5b4", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.miRNA-Seq.T.hg38 C3L-02556 CCRCC miRNA-Seq tumor CPT0161820009 de21b996-2754-4c45-a4d2-d6237167f312_mirnaseq_gdc_realn.bam 248239200 BAM harmonized CPTAC3 9f533623-afd1-4888-821a-261cff0cbf78 e55a0056a05ce78d33fca45110771021 {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor"} -C3L-02556.RNA-Seq.chimeric.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.chimeric.gdc_realn.bam 106732796 BAM chimeric harmonized CPTAC3 effd32a3-1bae-4e40-8a56-623d0e865a36 0adf043ed3b1fb512783ec8909e196ca {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.RNA-Seq.chimeric.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.chimeric.gdc_realn.bam 137604758 BAM chimeric harmonized CPTAC3 e17c5f95-f784-4def-8fa9-1a67a244bba4 bccd9eeb432e512cb922692ad06e4a1f {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor"} -C3L-02556.RNA-Seq.genomic.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.genomic.gdc_realn.bam 8967642182 BAM genomic harmonized CPTAC3 165edcb0-68c5-4385-b385-fedc9ec7b379 7e7679a7ef87480cd58ef3382135e4b7 {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.RNA-Seq.genomic.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.genomic.gdc_realn.bam 7535184980 BAM genomic harmonized CPTAC3 672b8f50-cbda-4fcc-b20c-659ef58468db 4db745b3eebf25cfe9cea7287429664a {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor"} -C3L-02556.RNA-Seq.S10_L005_R1.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R1_001.fastq.gz 4241623160 FASTQ S10_L005_R1 unaligned CPTAC3 b22c88c6-36ff-4e53-b1a5-937c3ee821bc 78605b5fadb77eea51e216c9cac17744 {"aliquot_tag": "ALQ_fabd5b4", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.RNA-Seq.S10_L005_R2.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R2_001.fastq.gz 4061007807 FASTQ S10_L005_R2 unaligned CPTAC3 ee6733dd-b380-426e-945a-f18640e23c50 ef63e72e3599698b36f01b83799e94c0 {"aliquot_tag": "ALQ_fabd5b4", "sample": "S10", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.RNA-Seq.S17_L006_R1.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R1_001.fastq.gz 3548087216 FASTQ S17_L006_R1 unaligned CPTAC3 b717e57d-8708-49d4-9132-7536787e70b6 f8b16ed57a0b09bf1c8fb5eeecda2280 {"aliquot_tag": "ALQ_80eb2014", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02556.RNA-Seq.S17_L006_R2.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R2_001.fastq.gz 3755777817 FASTQ S17_L006_R2 unaligned CPTAC3 b95128aa-5522-40e5-bb51-d469d38f8ccb ebc689aa61dbbba4a8c50972dc6deb1b {"aliquot_tag": "ALQ_80eb2014", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02556.RNA-Seq.transcriptome.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.transcriptome.gdc_realn.bam 10374472145 BAM transcriptome harmonized CPTAC3 9dd8304b-87c9-4db3-bd9e-929e0763cbbe 06c3b08790c4514a308a11672e2351b7 {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.RNA-Seq.transcriptome.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.transcriptome.gdc_realn.bam 9717419402 BAM transcriptome harmonized CPTAC3 a7afb5c6-9b8e-4a1d-a93e-9e8bcea2f06c 088e08348b902fde1b116bf6c93d9652 {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor"} -C3L-02556.WGS.A C3L-02556 CCRCC WGS tissue_normal CPT0161840006 CPT0161840006.WholeGenome.RP-1303.bam 60859386031 BAM aligned CPTAC3 13403413-d910-4204-afc4-8207487a4884 5bbf0d53641e466f48de13b183478d1e {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.WGS.A.hg38 C3L-02556 CCRCC WGS tissue_normal CPT0161840006 b7a04871-4d92-46d1-a82a-c5633050cdb2_wgs_gdc_realn.bam 89913617320 BAM harmonized CPTAC3 d7e9ac03-bfef-4ff6-9ee2-6c2f0d1347ca 751eef3029badc6979c7d842cf5caf30 {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.WGS.N C3L-02556 CCRCC WGS blood_normal CPT0162570002 CPT0162570002.WholeGenome.RP-1303.bam 61402066287 BAM aligned CPTAC3 00d6beb8-9232-4817-a898-0024fa02282f b7ed71bfc2067396d42275ba11c62819 {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02556.WGS.N.hg38 C3L-02556 CCRCC WGS blood_normal CPT0162570002 8c1ab021-ae21-443e-b11e-2a1fbe42e76e_wgs_gdc_realn.bam 88661047806 BAM harmonized CPTAC3 351b67d4-02d7-481c-92fc-ca1c7df7296f 1e8078a643075e75057249e4dc116f27 {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02556.WGS.T C3L-02556 CCRCC WGS tumor CPT0161820011 CPT0161820011.WholeGenome.RP-1303.bam 63186672487 BAM aligned CPTAC3 3786f814-20b5-46e8-bd9b-b1118ab2431b a6fd5c2880c4a3a006d35de842d5aa12 {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor"} -C3L-02556.WGS.T.hg38 C3L-02556 CCRCC WGS tumor CPT0161820011 6edebf20-1868-4b4d-9183-d09a46d4202c_wgs_gdc_realn.bam 91933761380 BAM harmonized CPTAC3 7d407861-bfbc-41d7-9b9f-a85a9c308f86 411cb43979e8dd477eadf7a85716cb85 {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor"} -C3L-02556.WXS.A C3L-02556 CCRCC WXS tissue_normal CPT0161840006 CPT0161840006.WholeExome.RP-1303.bam 21105673389 BAM aligned CPTAC3 45f86ad5-f152-44f0-8d66-0b8f6912e6f4 67f3760b93ff8e6c2e20016912d4483d {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.WXS.A.hg38 C3L-02556 CCRCC WXS tissue_normal CPT0161840006 b7a04871-4d92-46d1-a82a-c5633050cdb2_wxs_gdc_realn.bam 29567379553 BAM harmonized CPTAC3 79e108e8-52e8-42dc-a800-be23772121af e201b2e0915a8de303a85d54a252dcda {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02556.WXS.N C3L-02556 CCRCC WXS blood_normal CPT0162570002 CPT0162570002.WholeExome.RP-1303.bam 23611604712 BAM aligned CPTAC3 562e51fe-c072-4579-bcc2-441178e67481 4e7adf9c3662e837cc8a01eb18baa83d {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02556.WXS.N.hg38 C3L-02556 CCRCC WXS blood_normal CPT0162570002 8c1ab021-ae21-443e-b11e-2a1fbe42e76e_wxs_gdc_realn.bam 32776707948 BAM harmonized CPTAC3 63b67bd3-31a5-4638-9b62-c4db52c9dd3f 651dcc239f6d7f02e7b8d978c5870e19 {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02556.WXS.T C3L-02556 CCRCC WXS tumor CPT0161820011 CPT0161820011.WholeExome.RP-1303.bam 44476572818 BAM aligned CPTAC3 b5630c5d-dc01-4e57-88b6-6a04bdf4210b ed30f62a2b353ded4d5186718d0122bf {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor"} -C3L-02556.WXS.T.hg38 C3L-02556 CCRCC WXS tumor CPT0161820011 6edebf20-1868-4b4d-9183-d09a46d4202c_wxs_gdc_realn.bam 61511896070 BAM harmonized CPTAC3 aafc0495-0439-4f7e-8233-857f436e38d9 f9b3f77e83d4641573f55a89e9ab4b8e {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor"} -C3L-02557.MethArray.Green.T C3L-02557 UCEC Methylation_Array tumor CPT0128610006 203219650098_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a1994f66-70dd-42c6-a54b-da9484218687 56c7a6dc9abf7a8b74ea09a25f256835 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor"} -C3L-02557.MethArray.Red.T C3L-02557 UCEC Methylation_Array tumor CPT0128610006 203219650098_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 7ddbf852-8a6b-4f6a-ba65-ff41137c632d 7b3578ccd08c09a4b2d0a4b47e830b5c {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor"} -C3L-02557.miRNA-Seq.A.hg38 C3L-02557 UCEC miRNA-Seq tissue_normal CPT0128630009 2f96f03b-ecbf-41f7-9c39-2b113b61101a_mirnaseq_gdc_realn.bam 288465282 BAM harmonized CPTAC3 719663f1-4297-478d-8b32-ef5eb897150c d61beff17b1c8c2122c10d0a8fb4b7ff {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.miRNA-Seq.S25_L005_R1.T C3L-02557 UCEC miRNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTGAT_S25_L005_R1_001.unaln.bam 151191206 BAM S25_L005_R1 unaligned CPTAC3 2c6231dd-e47f-4561-bc9c-789247e3c5af becb84e7a8e98a98947cdc73c8e64837 {"aliquot_tag": "ALQ_ec93709d", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02557.miRNA-Seq.S39_L003_R1.A C3L-02557 UCEC miRNA-Seq tissue_normal CPT0128630009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L003_R1_001.unaln.bam 249180933 BAM S39_L003_R1 unaligned CPTAC3 3ca3735c-fe98-474a-903f-7e5b3f52c0d0 4633bb38c6b15712ba3a61e1407e4dec {"aliquot_tag": "ALQ_965323fd", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.miRNA-Seq.T.hg38 C3L-02557 UCEC miRNA-Seq tumor CPT0128610009 6f760c5e-7c11-483f-8807-f556571a9802_mirnaseq_gdc_realn.bam 165071558 BAM harmonized CPTAC3 c9721d00-7df7-41c3-b857-5664c9746644 b7b5688aba07f98abf20f3b0f2a63d3d {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.chimeric.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.chimeric.gdc_realn.bam 104088832 BAM chimeric harmonized CPTAC3 b43a1e01-ef12-4899-8afe-09760dcb157d 449a6168075d6f2b97fb5142335021d8 {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.RNA-Seq.chimeric.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.chimeric.gdc_realn.bam 65730898 BAM chimeric harmonized CPTAC3 4116d176-b7b3-472a-92e7-905ad5cb3a35 6cf1790785f3437f34a8e1ddd3af0b8e {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.chimeric.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.chimeric.gdc_realn.bam 216126330 BAM chimeric harmonized CPTAC3 eed2fdbc-8a59-48f4-9b58-fea1446b769b 18d3520350cf8d6bedc63e84a16646e2 {"aliquot_tag": "ALQ_14c58621", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.genomic.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.genomic.gdc_realn.bam 7903987536 BAM genomic harmonized CPTAC3 93ef344b-1ebb-40c8-ad54-f653b3a24eab 9d9b2be378348c577e0c376eb2109c1a {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.RNA-Seq.genomic.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.genomic.gdc_realn.bam 6896036633 BAM genomic harmonized CPTAC3 abdc5bf9-52d0-43e5-a7da-477f4b448ebe d36a119d15d9186ae10b2a7cc7ad9143 {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.genomic.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.genomic.gdc_realn.bam 10360131763 BAM genomic harmonized CPTAC3 725b5683-8640-4acc-9617-c8d592061762 a19df831c04b5c55578adbb86750e4e7 {"aliquot_tag": "ALQ_14c58621", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.S23_L008_R1.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R1_001.fastq.gz 3840681261 FASTQ S23_L008_R1 unaligned CPTAC3 433a6377-20d2-4216-9912-d7f6f1f35013 dd87e26366cbb1858c4710b47dca0eef {"aliquot_tag": "ALQ_965323fd", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.RNA-Seq.S23_L008_R2.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R2_001.fastq.gz 4169058544 FASTQ S23_L008_R2 unaligned CPTAC3 88b45d63-9c6d-41d2-b919-2008598de3bc 174d193d00931fff3355a53a1e3fde9b {"aliquot_tag": "ALQ_965323fd", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.RNA-Seq.S5_L002_R1.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R1_001.fastq.gz 3291331605 FASTQ S5_L002_R1 unaligned CPTAC3 33cbabe8-0746-41b2-ada5-7b668b6cedfc bc9b3a94ac3e270324290e71efd6d9d5 {"aliquot_tag": "ALQ_ec93709d", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.S5_L002_R2.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R2_001.fastq.gz 3220497478 FASTQ S5_L002_R2 unaligned CPTAC3 2cd64bbc-c722-40ab-ae0f-2b475b8ddf90 6223874e7b64097e2f71f92330015ef9 {"aliquot_tag": "ALQ_ec93709d", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.S9_R1.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R1_001.fastq.gz 6097878206 FASTQ S9_R1 unaligned CPTAC3 781ed3ac-092b-4ff3-be64-da6ddc4489f5 176314d8d22175cfee7ede6a2e5c0d4a {"aliquot_tag": "ALQ_14c58621", "sample": "S9", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.S9_R2.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R2_001.fastq.gz 6371845610 FASTQ S9_R2 unaligned CPTAC3 4589e270-feaa-40e8-b8a7-51ce297b7faa f66fe2d77555b60acdfd71304bfbd740 {"aliquot_tag": "ALQ_14c58621", "sample": "S9", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.transcriptome.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.transcriptome.gdc_realn.bam 8748148277 BAM transcriptome harmonized CPTAC3 f70b6233-9b23-4825-8983-bfd981757ceb 38306f0e827e92ee1d3c35b89299a6c8 {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.RNA-Seq.transcriptome.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.transcriptome.gdc_realn.bam 8718932781 BAM transcriptome harmonized CPTAC3 36882eae-de93-4b64-9b07-d9b0dd2244cf f6b7264109a537e6077e45e674b4e12d {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor"} -C3L-02557.RNA-Seq.transcriptome.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.transcriptome.gdc_realn.bam 6493764077 BAM transcriptome harmonized CPTAC3 e9ba9b87-132c-47bf-9945-1130b1adf517 e2ee76afd154450bf2a200a50e8f685a {"aliquot_tag": "ALQ_14c58621", "gdc_sample_type": "Primary Tumor"} -C3L-02557.WGS.A C3L-02557 UCEC WGS tissue_normal CPT0128630006 CPT0128630006.WholeGenome.RP-1303.bam 59734738877 BAM aligned CPTAC3 423834a1-7a65-4e12-8210-95fe71b06880 fd1abbc83d869467796a2837dd29d5ee {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.WGS.A.hg38 C3L-02557 UCEC WGS tissue_normal CPT0128630006 136a45ed-0c1e-4773-8d40-808c7e4f1bba_wgs_gdc_realn.bam 89315864612 BAM harmonized CPTAC3 a2b41edb-8fa2-4c34-97d2-7492d146d7d6 803223397a1003715e881c3899042fd1 {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.WGS.N C3L-02557 UCEC WGS blood_normal CPT0129430002 CPT0129430002.WholeGenome.RP-1303.bam 52865535379 BAM aligned CPTAC3 30e36f0d-c1c3-4a7f-9c26-651f79740fcb f6dec8c78f0101681c406b2268b2aa47 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02557.WGS.N.hg38 C3L-02557 UCEC WGS blood_normal CPT0129430002 2ace32af-b1e3-497b-8f07-ea54309b1966_wgs_gdc_realn.bam 76337462965 BAM harmonized CPTAC3 0b746d94-33f1-4fdc-b3fd-16ddcf42e591 75a503e917bbd4ccb89914923e2a3a34 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02557.WGS.T C3L-02557 UCEC WGS tumor CPT0128610006 CPT0128610006.WholeGenome.RP-1303.bam 60896563137 BAM aligned CPTAC3 a0d6161a-f22a-4de8-8016-0d9d044c4463 8881bebf2a8ffe9d6b495b905d4fd285 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor"} -C3L-02557.WGS.T.hg38 C3L-02557 UCEC WGS tumor CPT0128610006 283d4f58-c25b-4dca-a0a9-a123b32ade28_wgs_gdc_realn.bam 87652803431 BAM harmonized CPTAC3 97b955be-19d5-4750-919d-eaa2f05f57a8 5b4df86ef42b87a635423b94ae864a59 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor"} -C3L-02557.WXS.A C3L-02557 UCEC WXS tissue_normal CPT0128630006 CPT0128630006.WholeExome.RP-1303.bam 23583555899 BAM aligned CPTAC3 324817c7-ad34-46e3-be22-3c05af70fa2d f4257ba4e58ef8b4b42b781bd2a4f1c4 {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.WXS.A.hg38 C3L-02557 UCEC WXS tissue_normal CPT0128630006 136a45ed-0c1e-4773-8d40-808c7e4f1bba_wxs_gdc_realn.bam 32620700506 BAM harmonized CPTAC3 c9fbd8ea-5045-410f-aef2-a8da318d121c a354f1998a5aaaef139ee1e241296fc1 {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02557.WXS.N C3L-02557 UCEC WXS blood_normal CPT0129430002 CPT0129430002.WholeExome.RP-1303.bam 23371800701 BAM aligned CPTAC3 eec635cd-bab2-43cc-be7b-3817871d35da 5617add48ea906193d158dcf2be2ac14 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02557.WXS.N.hg38 C3L-02557 UCEC WXS blood_normal CPT0129430002 2ace32af-b1e3-497b-8f07-ea54309b1966_wxs_gdc_realn.bam 31831966242 BAM harmonized CPTAC3 992aa5c6-11ac-49d5-a9cf-c9fe81932447 a2efe6d1acd4a12cb5b009380d168b60 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal"} -C3L-02557.WXS.T C3L-02557 UCEC WXS tumor CPT0128610006 CPT0128610006.WholeExome.RP-1303.bam 19729441627 BAM aligned CPTAC3 222acc5c-cbe4-4fff-a7bc-c617ed98be10 35181dbb96dc56524b63adf70c79c7c2 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor"} -C3L-02557.WXS.T.hg38 C3L-02557 UCEC WXS tumor CPT0128610006 283d4f58-c25b-4dca-a0a9-a123b32ade28_wxs_gdc_realn.bam 27007574624 BAM harmonized CPTAC3 39880efe-bcea-4c4a-ba5c-14d79468bce9 d7ab6d68198e6b8df744769cef5e19f4 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor"} -C3L-02559.MethArray.Green.A C3L-02559 LUAD Methylation_Array tissue_normal CPT0128300006 203219670122_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 53d08a99-165b-4b56-a4c4-5353838aef36 7fcdbc51b844d8fe76152f2ec5a962a1 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.MethArray.Green.T C3L-02559 LUAD Methylation_Array tumor CPT0128290006 203219650004_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 7a5afd51-1291-4008-a944-8c6a809a9648 27458f231d92567ca23a3fc8fa95cee2 {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor"} -C3L-02559.MethArray.Red.A C3L-02559 LUAD Methylation_Array tissue_normal CPT0128300006 203219670122_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 8d2f77ec-d9e3-4d14-ae1f-09012414f1ef 03d848e9395725fc76c3390f3bb360ec {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.MethArray.Red.T C3L-02559 LUAD Methylation_Array tumor CPT0128290006 203219650004_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 f6349c0b-30a3-48dc-a1fe-69965bab4322 14597e582ef77e150595baecb61c5ddf {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor"} -C3L-02559.miRNA-Seq.A.hg38 C3L-02559 LUAD miRNA-Seq tissue_normal CPT0128300009 ce82dcda-bd95-430c-aa71-e8472422925f_mirnaseq_gdc_realn.bam 198479595 BAM harmonized CPTAC3 01534d80-d9e3-4d04-8b34-9e26b3391037 31546b548d771c738f75cde5254c8958 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.miRNA-Seq.S21_L004_R1.T C3L-02559 LUAD miRNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTTTCG_S21_L004_R1_001.unaln.bam 182357104 BAM S21_L004_R1 unaligned CPTAC3 00f7447f-6d16-40d8-ab95-99c15c06884b ee537ab662db222c9176fa9f69264fd2 {"aliquot_tag": "ALQ_4772794a", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02559.miRNA-Seq.S36_L003_R1.A C3L-02559 LUAD miRNA-Seq tissue_normal CPT0128300009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCAACA_S36_L003_R1_001.unaln.bam 176158144 BAM S36_L003_R1 unaligned CPTAC3 7c60e43d-f8a6-4a3f-a3b1-067583c9167b ceb3b6b2de8ec6334c8c993ce929a777 {"aliquot_tag": "ALQ_813ec89e", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.miRNA-Seq.T.hg38 C3L-02559 LUAD miRNA-Seq tumor CPT0128290009 10827a72-b85b-410d-bf70-b2f9f08d296a_mirnaseq_gdc_realn.bam 197529950 BAM harmonized CPTAC3 45cd39ca-9874-44c9-a90f-1f6597c88511 fb2a186abfbb52bdd9619c26a3efc9f3 {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor"} -C3L-02559.RNA-Seq.chimeric.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.chimeric.gdc_realn.bam 71397249 BAM chimeric harmonized CPTAC3 1589a3ec-0cbb-4b25-b9ae-e8c774345e96 dc95f6aa33003cd1f7de81b29bf8ad37 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.RNA-Seq.chimeric.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.chimeric.gdc_realn.bam 61751028 BAM chimeric harmonized CPTAC3 9f2a8ed8-3291-47cc-95fa-e52fcc661a8f e744a491e090bee1c2ccc3e51919c57f {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor"} -C3L-02559.RNA-Seq.genomic.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.genomic.gdc_realn.bam 7884666956 BAM genomic harmonized CPTAC3 3e0bc628-9ec3-4f41-855c-bb74fe84fc39 e23d4aa47ac7a89c93d6ba3e3ca2d8f5 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.RNA-Seq.genomic.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.genomic.gdc_realn.bam 7961523673 BAM genomic harmonized CPTAC3 b10f776a-7f5f-4ad8-8210-af13c3a5ff86 675770fc286ff2b54a35f4ed42ea928c {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor"} -C3L-02559.RNA-Seq.S21_L007_R1.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R1_001.fastq.gz 3744251953 FASTQ S21_L007_R1 unaligned CPTAC3 8f33216c-d930-4b62-b486-fc174d828c87 2daa993206248c1d8985a62c0d18ef0d {"aliquot_tag": "ALQ_813ec89e", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.RNA-Seq.S21_L007_R2.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R2_001.fastq.gz 3954305966 FASTQ S21_L007_R2 unaligned CPTAC3 eb96735b-b6f3-4f09-ac7e-4687d395bccd f4d163486ae23951debbe3cc7d32fced {"aliquot_tag": "ALQ_813ec89e", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.RNA-Seq.S3_L001_R1.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R1_001.fastq.gz 3823360772 FASTQ S3_L001_R1 unaligned CPTAC3 ab7aee22-bbe6-44ff-b4a1-eb747707105f ef562ecb8be3d35a6bc2b55e61dc5895 {"aliquot_tag": "ALQ_4772794a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02559.RNA-Seq.S3_L001_R2.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R2_001.fastq.gz 4132241962 FASTQ S3_L001_R2 unaligned CPTAC3 7813027e-f048-44fb-8774-5fde1c2f3a44 0c980645ddf5caa66c5f5bb34e535a0e {"aliquot_tag": "ALQ_4772794a", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02559.RNA-Seq.transcriptome.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.transcriptome.gdc_realn.bam 9297994837 BAM transcriptome harmonized CPTAC3 e6f1351a-76e8-47cc-ae38-520a9233f6d7 fa1efbb919e73d891bb62696b6226004 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.RNA-Seq.transcriptome.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.transcriptome.gdc_realn.bam 11007010176 BAM transcriptome harmonized CPTAC3 a4a2edba-3d5a-482f-8721-069edec4ffe4 a1fb50229d8d8b901d8b7baa7c5febf9 {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor"} -C3L-02559.WGS.A C3L-02559 LUAD WGS tissue_normal CPT0128300006 CPT0128300006.WholeGenome.RP-1303.bam 60641694956 BAM aligned CPTAC3 2d7c6354-ba8a-4fd4-a146-fce5aa2a5618 989d5d9d67c745d67b0492973076c4f7 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.WGS.A.hg38 C3L-02559 LUAD WGS tissue_normal CPT0128300006 42f4a8c2-a045-42c0-b0a2-3f54d68c76a7_wgs_gdc_realn.bam 88271559257 BAM harmonized CPTAC3 0575281c-1b27-4f15-8bef-ccc1f702b351 4ee6312307dc58f818a859f7c3353950 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.WGS.N C3L-02559 LUAD WGS blood_normal CPT0129460002 CPT0129460002.WholeGenome.RP-1303.bam 59990251419 BAM aligned CPTAC3 db1f81ee-d4ae-469e-8c03-f89b90652780 969ae04938c361cb5a9e8f502bb42949 {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02559.WGS.N.hg38 C3L-02559 LUAD WGS blood_normal CPT0129460002 0065cd02-316a-42a2-8efc-cebe2bb95dca_wgs_gdc_realn.bam 85526956843 BAM harmonized CPTAC3 305f1f84-f450-487f-85ac-03a149833893 c8855296db5770b777ed0547cf1814af {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02559.WGS.T C3L-02559 LUAD WGS tumor CPT0128290006 CPT0128290006.WholeGenome.RP-1303.bam 84167246228 BAM aligned CPTAC3 a0bdc6bc-6fa9-47a8-adf0-ab0eb1c50800 46b20737db40bd5d4460e462e0446c98 {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor"} -C3L-02559.WGS.T.hg38 C3L-02559 LUAD WGS tumor CPT0128290006 95f0e979-c3d5-481d-93dc-68b56beb48ef_wgs_gdc_realn.bam 126177188878 BAM harmonized CPTAC3 076d6452-2883-4a57-9ea4-62f9b075164b 7c9d6fdc3d593c6fcc691168910626a5 {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor"} -C3L-02559.WXS.A C3L-02559 LUAD WXS tissue_normal CPT0128300006 CPT0128300006.WholeExome.RP-1303.bam 20448783609 BAM aligned CPTAC3 39ab7eff-dd32-4424-b8d0-cfa1f78d2b02 64c1c121295d2b3b0f2c0594c21721e8 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.WXS.A.hg38 C3L-02559 LUAD WXS tissue_normal CPT0128300006 42f4a8c2-a045-42c0-b0a2-3f54d68c76a7_wxs_gdc_realn.bam 28068207116 BAM harmonized CPTAC3 0876b7a0-2d30-4a40-a108-eddbf69cd9d7 98a1326f0956b366952e25dcb0bc82a7 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02559.WXS.N C3L-02559 LUAD WXS blood_normal CPT0129460002 CPT0129460002.WholeExome.RP-1303.bam 26027069199 BAM aligned CPTAC3 40f1e295-37d9-4385-9328-20a7b688fdfc 9ec4ab15fc95059d929adc43236c098b {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02559.WXS.N.hg38 C3L-02559 LUAD WXS blood_normal CPT0129460002 0065cd02-316a-42a2-8efc-cebe2bb95dca_wxs_gdc_realn.bam 35674161409 BAM harmonized CPTAC3 29e7ae17-8028-4a91-b96d-68fdd332a31e d5bc3e71a93a3b7dc72f24bb3dab68e3 {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02559.WXS.T C3L-02559 LUAD WXS tumor CPT0128290006 CPT0128290006.WholeExome.RP-1303.bam 17509679729 BAM aligned CPTAC3 8c2bb5f5-05d5-4f2b-b755-8611e7422ce2 c807a374db842c8c29c3c50c619255da {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor"} -C3L-02559.WXS.T.hg38 C3L-02559 LUAD WXS tumor CPT0128290006 95f0e979-c3d5-481d-93dc-68b56beb48ef_wxs_gdc_realn.bam 24325839649 BAM harmonized CPTAC3 62db5b53-5cb0-454b-b3e6-78b83f160a3f 147501cc37e6b44ed8c0574c5d613b0a {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor"} -C3L-02560.MethArray.Green.A C3L-02560 LUAD Methylation_Array tissue_normal CPT0128430006 203219650218_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7262e131-95d9-4648-bedf-7c5fbde8d1ae f986ebfa09361f43cb3826b05e310c06 {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.MethArray.Green.T C3L-02560 LUAD Methylation_Array tumor CPT0128420006 203219640157_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f0c2f5ee-5b18-4657-ae67-8a34ff52f4d0 87554fd8d25544870d08c58980474d32 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor"} -C3L-02560.MethArray.Red.A C3L-02560 LUAD Methylation_Array tissue_normal CPT0128430006 203219650218_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 b63a0d14-f001-4363-a369-0053640d5ed3 9892bae4d82615ee9155da46ac4d5dfa {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.MethArray.Red.T C3L-02560 LUAD Methylation_Array tumor CPT0128420006 203219640157_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 b3db4037-e0c5-4653-9f3a-fb7e0c24674c 0746ebf5ab27d3f481cb70d5b25b2ef2 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor"} -C3L-02560.miRNA-Seq.A.hg38 C3L-02560 LUAD miRNA-Seq tissue_normal CPT0128430009 e34f7427-29dc-4462-aedd-7fb251814110_mirnaseq_gdc_realn.bam 236849831 BAM harmonized CPTAC3 43337563-165d-4f26-8d5d-e130f1be4f60 27f884c2ba3d7ca5ce1422821b2cc84f {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.miRNA-Seq.S24_L004_R1.T C3L-02560 LUAD miRNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0176_AHYGLVBBXX_GGTAGC_S24_L004_R1_001.unaln.bam 182342805 BAM S24_L004_R1 unaligned CPTAC3 0e23e387-c68b-42b8-9921-0ce39f69f2fc 645a1714e2ed9912006ca3c005372a70 {"aliquot_tag": "ALQ_e6fbab46", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02560.miRNA-Seq.S38_L003_R1.A C3L-02560 LUAD miRNA-Seq tissue_normal CPT0128430009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L003_R1_001.unaln.bam 213562661 BAM S38_L003_R1 unaligned CPTAC3 3645e5f3-1018-45cc-a74e-cd1035e2873e 7df27754de5b74a373b82eff73a0771e {"aliquot_tag": "ALQ_db9b82f6", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.miRNA-Seq.T.hg38 C3L-02560 LUAD miRNA-Seq tumor CPT0128420009 8e5e2bf4-8464-49e7-9240-7dd29f8fd79e_mirnaseq_gdc_realn.bam 204140553 BAM harmonized CPTAC3 f34320a6-49b9-487c-a4f6-6e08d166e0b1 5359992ac5d478c76dcc66349c45750e {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor"} -C3L-02560.RNA-Seq.chimeric.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.chimeric.gdc_realn.bam 51744730 BAM chimeric harmonized CPTAC3 a1120493-157a-46cc-83d6-06c86e74d78b e2f27ec9f69d7a140cec4fa7c054347e {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.RNA-Seq.chimeric.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.chimeric.gdc_realn.bam 69987282 BAM chimeric harmonized CPTAC3 c632bb32-e560-4def-8e43-d63cf2272fcf 8ff5863856c56fd59bf63e66505a0189 {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor"} -C3L-02560.RNA-Seq.genomic.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.genomic.gdc_realn.bam 8692283968 BAM genomic harmonized CPTAC3 96bf8720-47df-4404-b308-8e7a6e64ead0 d5c21c6eb6cb6ed381fccc5d29177e5f {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.RNA-Seq.genomic.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.genomic.gdc_realn.bam 8825479469 BAM genomic harmonized CPTAC3 589afb6b-c9d2-4a1d-ba55-cc29ffef0742 ac3d6d362cdae074d592960fe16ccccd {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor"} -C3L-02560.RNA-Seq.S22_L008_R1.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R1_001.fastq.gz 3940099448 FASTQ S22_L008_R1 unaligned CPTAC3 51c04bce-ad69-469b-98dc-8c69a227c7be 1c3087d86bd75500700ab73aa57a70e9 {"aliquot_tag": "ALQ_db9b82f6", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.RNA-Seq.S22_L008_R2.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R2_001.fastq.gz 4175641603 FASTQ S22_L008_R2 unaligned CPTAC3 7464a550-6337-4d64-ba60-5ed008c79aea 72940a369bcf06836d598e7e0ccded7b {"aliquot_tag": "ALQ_db9b82f6", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.RNA-Seq.S4_L001_R1.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4000937527 FASTQ S4_L001_R1 unaligned CPTAC3 f27b1c4d-286d-4e6a-be1f-25990e08b452 01157b572168fc05c9cf241a7cae39b3 {"aliquot_tag": "ALQ_e6fbab46", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02560.RNA-Seq.S4_L001_R2.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4271249432 FASTQ S4_L001_R2 unaligned CPTAC3 815eeddf-9d16-404d-ab02-0e79d61f2d10 1c9e3743e400e4feda96d85180c87167 {"aliquot_tag": "ALQ_e6fbab46", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02560.RNA-Seq.transcriptome.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.transcriptome.gdc_realn.bam 9983102897 BAM transcriptome harmonized CPTAC3 02729671-4ffd-4791-8501-82dad69362a9 dc1d62f06e1bf1a410a6d1bc74fe9454 {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.RNA-Seq.transcriptome.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.transcriptome.gdc_realn.bam 11494030356 BAM transcriptome harmonized CPTAC3 4e196ffc-de88-4b20-9034-39b4decd021a 971d02dd290f9ab41c1f928abd495f81 {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor"} -C3L-02560.WGS.A C3L-02560 LUAD WGS tissue_normal CPT0128430006 CPT0128430006.WholeGenome.RP-1303.bam 72688910012 BAM aligned CPTAC3 1ab787f1-1529-4789-b75c-8aa9475f12f3 090a32e9b6b5d273f9bb1736a6ad9745 {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.WGS.A.hg38 C3L-02560 LUAD WGS tissue_normal CPT0128430006 3816b40f-a0a2-4e60-a511-ad06451fccba_wgs_gdc_realn.bam 105559487770 BAM harmonized CPTAC3 287a55e9-63ea-4158-b309-4213e1022487 6b420977876b221a25403549045f886a {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.WGS.N C3L-02560 LUAD WGS blood_normal CPT0129440002 CPT0129440002.WholeGenome.RP-1303.bam 53218697338 BAM aligned CPTAC3 9c4c3cc8-d31d-4fbd-aec2-608d3fbeb820 e18d207ffce11baa632b41959e67a798 {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal"} -C3L-02560.WGS.N.hg38 C3L-02560 LUAD WGS blood_normal CPT0129440002 598aff31-11ff-4b23-a95f-b00cc941420e_wgs_gdc_realn.bam 77186176450 BAM harmonized CPTAC3 5d04545d-33c9-4a46-aef5-a0e1c68a7874 aec53f7fde62435f29f7b13fb406166a {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal"} -C3L-02560.WGS.T C3L-02560 LUAD WGS tumor CPT0128420006 CPT0128420006.WholeGenome.RP-1303.bam 62014510271 BAM aligned CPTAC3 6110e48f-c5b7-401c-b6c3-7eb94f2c4873 63da5d4590bcca74603844b6da67e03b {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor"} -C3L-02560.WGS.T.hg38 C3L-02560 LUAD WGS tumor CPT0128420006 3dc4a8e3-2ee0-42d5-ba5a-423a4d3ee473_wgs_gdc_realn.bam 90412536623 BAM harmonized CPTAC3 9a939bbc-209c-4f40-abdc-665c16b9bace c3bbac0e912d559b140f3c3a43cb9d4f {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor"} -C3L-02560.WXS.A C3L-02560 LUAD WXS tissue_normal CPT0128430006 CPT0128430006.WholeExome.RP-1303.bam 21795046743 BAM aligned CPTAC3 938bbc80-4835-4dfa-8753-8679cff91f9d 79ca5d454d11779aa50c3c0bd33f33dd {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.WXS.A.hg38 C3L-02560 LUAD WXS tissue_normal CPT0128430006 3816b40f-a0a2-4e60-a511-ad06451fccba_wxs_gdc_realn.bam 30100395940 BAM harmonized CPTAC3 b26f8965-2fe9-4e6c-b27d-0c613459aaf7 9a0f99d98ae8107853344cd10f054e74 {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02560.WXS.N C3L-02560 LUAD WXS blood_normal CPT0129440002 CPT0129440002.WholeExome.RP-1303.bam 27619289537 BAM aligned CPTAC3 4bbd6923-afaa-4bad-8051-1b7bcf16959f 3324de641376928209a6c6a823870e62 {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal"} -C3L-02560.WXS.N.hg38 C3L-02560 LUAD WXS blood_normal CPT0129440002 598aff31-11ff-4b23-a95f-b00cc941420e_wxs_gdc_realn.bam 38453363383 BAM harmonized CPTAC3 300a3333-08df-486e-87f3-9a149558de8d a7443dead49fa3c3be3676199e3ac10b {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal"} -C3L-02560.WXS.T C3L-02560 LUAD WXS tumor CPT0128420006 CPT0128420006.WholeExome.RP-1303.bam 18002564535 BAM aligned CPTAC3 3ff6fd70-5980-4a5d-bb2e-8cb05b951cf4 ad63634c013f66b2c00fc0fcfc86c691 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor"} -C3L-02560.WXS.T.hg38 C3L-02560 LUAD WXS tumor CPT0128420006 3dc4a8e3-2ee0-42d5-ba5a-423a4d3ee473_wxs_gdc_realn.bam 24842902495 BAM harmonized CPTAC3 cb62feaa-ca81-4f81-ad26-555b8d7b44fc 3ea1e05829918dc36816de2d6edbdae6 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor"} -C3L-02601.MethArray.Green.A C3L-02601 LUAD Methylation_Array tissue_normal CPT0128340006 203219650042_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b47b7ff1-b5b8-43fb-ae8c-f9c79b27e680 32cd82eeac6ddb4869b3b7757d4c7a7d {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.MethArray.Green.T C3L-02601 LUAD Methylation_Array tumor CPT0128330006 203219640095_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 28ee2863-bc94-43f4-a86d-0176e324d8aa 8b6f13fd24c6c9c2739029ee3941efc1 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor"} -C3L-02601.MethArray.Red.A C3L-02601 LUAD Methylation_Array tissue_normal CPT0128340006 203219650042_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 1b8bae4a-c2c9-4113-bdb9-ee1854c2cf86 2e5a17559e66be80ef160151473e75cb {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.MethArray.Red.T C3L-02601 LUAD Methylation_Array tumor CPT0128330006 203219640095_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 bb64f19b-da54-4c66-9a87-8b3ec99200fe 11086e534077d511b17969379266fbd2 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor"} -C3L-02601.miRNA-Seq.A.hg38 C3L-02601 LUAD miRNA-Seq tissue_normal CPT0128340009 e70c3ce5-99f4-455e-a91a-a536dc1773d0_mirnaseq_gdc_realn.bam 315664946 BAM harmonized CPTAC3 83a2b75a-2341-454b-8f28-b9672dcd12a9 6bc03dec2ae8e6d861bada710771c76d {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.miRNA-Seq.S22_L004_R1.T C3L-02601 LUAD miRNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L004_R1_001.unaln.bam 215868293 BAM S22_L004_R1 unaligned CPTAC3 fee600e5-4e79-4139-bd72-3cc7e56fe6a9 9a4a09ba3a2aece2254e123060d94da1 {"aliquot_tag": "ALQ_c69eb24e", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02601.miRNA-Seq.S37_L003_R1.A C3L-02601 LUAD miRNA-Seq tissue_normal CPT0128340009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L003_R1_001.unaln.bam 286533081 BAM S37_L003_R1 unaligned CPTAC3 8dbeb1c2-9d1d-4866-a5f2-b5d2205b03c8 ddf981a250f0cf8c052a68622a1a538f {"aliquot_tag": "ALQ_74be6e5e", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.miRNA-Seq.T.hg38 C3L-02601 LUAD miRNA-Seq tumor CPT0128330009 28523112-4c6a-4ac9-94e9-a471ea735c0a_mirnaseq_gdc_realn.bam 235391640 BAM harmonized CPTAC3 68dc9819-ba82-4b95-85f6-acfa33f81f0f ed651bc522431b7b3b911129fc0dd2a6 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor"} -C3L-02601.RNA-Seq.chimeric.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.chimeric.gdc_realn.bam 58904118 BAM chimeric harmonized CPTAC3 4c1bd88c-f2ce-4257-8a7a-ec1ac157b78e b034a49b2af4eca394b5ffc635f07f34 {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.RNA-Seq.chimeric.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.chimeric.gdc_realn.bam 70406696 BAM chimeric harmonized CPTAC3 6113fd17-4920-430e-b7ca-93c97f8594bb e49044c63a63212013c8e466b5705318 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor"} -C3L-02601.RNA-Seq.genomic.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.genomic.gdc_realn.bam 7492308605 BAM genomic harmonized CPTAC3 bd2ce067-d5a4-4120-9c7e-ba96bf8b7709 c29687ae62ec45f21df11d5de9e8f30f {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.RNA-Seq.genomic.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.genomic.gdc_realn.bam 9199838906 BAM genomic harmonized CPTAC3 c3aecff4-1a4d-4084-a9d2-5dcfda715d39 462256d4c0d44a1da798d4bee0b38390 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor"} -C3L-02601.RNA-Seq.S11_L008_R1.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R1_001.fastq.gz 3367179400 FASTQ S11_L008_R1 unaligned CPTAC3 34399ca8-37a1-44a2-aa17-feafa1f65fa4 336c096950ea32a8c7b99bdfb188f4c7 {"aliquot_tag": "ALQ_74be6e5e", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.RNA-Seq.S11_L008_R2.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R2_001.fastq.gz 3548408011 FASTQ S11_L008_R2 unaligned CPTAC3 2c8b66ba-7d17-4911-9111-0b8d3daec383 fa4bce28c5801c47f07a1192b19a4cdd {"aliquot_tag": "ALQ_74be6e5e", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.RNA-Seq.S2_L001_R1.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 4010737292 FASTQ S2_L001_R1 unaligned CPTAC3 e4d09861-9283-4247-9875-86db45537856 c806e701119097da4bbd23a34809e6d9 {"aliquot_tag": "ALQ_c69eb24e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02601.RNA-Seq.S2_L001_R2.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4256362118 FASTQ S2_L001_R2 unaligned CPTAC3 26763bb2-4879-4636-b85d-d245a59e8518 4f09ba31ba543ec5fe3b819bb3642fb5 {"aliquot_tag": "ALQ_c69eb24e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02601.RNA-Seq.transcriptome.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.transcriptome.gdc_realn.bam 9162770911 BAM transcriptome harmonized CPTAC3 f04b03d5-a232-4cd7-a459-a38f3f43cdbb 5a38d1b451c5f0f7947ec319b80c520d {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.RNA-Seq.transcriptome.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.transcriptome.gdc_realn.bam 11646228894 BAM transcriptome harmonized CPTAC3 186c2494-d69f-49ea-9aa9-17c7c4d67082 259e427d5c9f4aca3d850c6e7b76a5e8 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor"} -C3L-02601.WGS.A C3L-02601 LUAD WGS tissue_normal CPT0128340006 CPT0128340006.WholeGenome.RP-1303.bam 62668411196 BAM aligned CPTAC3 3a85647a-4243-4f86-999d-59e227eb83fd 9903a18ad0fac092143ec955b87d7c38 {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.WGS.A.hg38 C3L-02601 LUAD WGS tissue_normal CPT0128340006 e6f520a2-ddc2-4fb3-815e-bb385cadb15a_wgs_gdc_realn.bam 91191515698 BAM harmonized CPTAC3 aa62746c-0eb6-4239-8a78-0151b6f60ad7 c5d5f7b98bdbe1bab953cef5dcfc672d {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.WGS.N C3L-02601 LUAD WGS blood_normal CPT0129450002 CPT0129450002.WholeGenome.RP-1303.bam 61865848563 BAM aligned CPTAC3 3646e953-e073-4912-aea7-46eff9a57ea9 1e63ba001d4481b13d861a48c5fe4bf5 {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02601.WGS.N.hg38 C3L-02601 LUAD WGS blood_normal CPT0129450002 765b365f-5e1c-46ad-9705-c3cd875123ab_wgs_gdc_realn.bam 88627953694 BAM harmonized CPTAC3 b6aec28d-37c8-4972-9331-d225a1b69386 7798ddd201be06ccc9bf8b64cdd88175 {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02601.WGS.T C3L-02601 LUAD WGS tumor CPT0128330006 CPT0128330006.WholeGenome.RP-1303.bam 56024729091 BAM aligned CPTAC3 0c68df48-c2e4-431b-affc-df4c1c93c651 8ad1789141dfaef15ce015fca67b98c4 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor"} -C3L-02601.WGS.T.hg38 C3L-02601 LUAD WGS tumor CPT0128330006 867bff7c-d0f4-4bb6-9705-c3abbedcd249_wgs_gdc_realn.bam 81231691674 BAM harmonized CPTAC3 00b8b4ab-ed47-4a8d-bbf3-78ed5af46898 6267d2c0e5dd92ed97c1b978bef06598 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor"} -C3L-02601.WXS.A C3L-02601 LUAD WXS tissue_normal CPT0128340006 CPT0128340006.WholeExome.RP-1303.bam 21951298786 BAM aligned CPTAC3 20176511-d47a-4f4a-96a8-f74d228383f6 6ebe30f10453058e0d0455de91da4c30 {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.WXS.A.hg38 C3L-02601 LUAD WXS tissue_normal CPT0128340006 e6f520a2-ddc2-4fb3-815e-bb385cadb15a_wxs_gdc_realn.bam 30549811512 BAM harmonized CPTAC3 3329770b-7cb0-4643-9a41-6255d301ef3b 3b7ea6d4e3261acbc6098850aa622d9d {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02601.WXS.N C3L-02601 LUAD WXS blood_normal CPT0129450002 CPT0129450002.WholeExome.RP-1303.bam 23351733377 BAM aligned CPTAC3 53d6f6d2-fcc4-4afe-bace-a4824c5aa83a 1438a64ac720f32fe20aa8cb879c1c2f {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02601.WXS.N.hg38 C3L-02601 LUAD WXS blood_normal CPT0129450002 765b365f-5e1c-46ad-9705-c3cd875123ab_wxs_gdc_realn.bam 32236650950 BAM harmonized CPTAC3 e7dc058e-3ee2-4aea-8374-2e07b7911d97 f0fd0a4e73cb2fafbffc6ac44ad7806a {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02601.WXS.T C3L-02601 LUAD WXS tumor CPT0128330006 CPT0128330006.WholeExome.RP-1303.bam 26943533471 BAM aligned CPTAC3 4bab7efc-6214-48d2-bdd9-682ff635a75c 2da389439f74a3fe70c4db7b9bad8408 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor"} -C3L-02601.WXS.T.hg38 C3L-02601 LUAD WXS tumor CPT0128330006 867bff7c-d0f4-4bb6-9705-c3abbedcd249_wxs_gdc_realn.bam 36940843427 BAM harmonized CPTAC3 5e25bc63-b7d1-4ec8-bbba-a2a3fea509b5 447f09b61fd56da6be9ab2421ce70868 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor"} -C3L-02602.MethArray.Green.T C3L-02602 UCEC Methylation_Array tumor CPT0113910009 203219670217_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2b523aad-1b1e-47b5-a14b-6502b3841222 c61478052bbd95aa1a39d392383efd7e {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor"} -C3L-02602.MethArray.Red.T C3L-02602 UCEC Methylation_Array tumor CPT0113910009 203219670217_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 5dd19231-fe77-4e5e-9482-0e7920f52ed2 e214be686e45c412a2a4ed3ae35551b6 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor"} -C3L-02602.miRNA-Seq.A.hg38 C3L-02602 UCEC miRNA-Seq tissue_normal CPT0113930009 6bac9dda-aa22-4dda-af4f-0334452b0181_mirnaseq_gdc_realn.bam 290598885 BAM harmonized CPTAC3 f44e378d-ee47-49f1-be8c-280b659339df 309ccea7f79f2110f5161b72bd3bcbb9 {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.miRNA-Seq.S32_L003_R1.T C3L-02602 UCEC miRNA-Seq tumor CPT0113910006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACTCA_S32_L003_R1_001.unaln.bam 169735024 BAM S32_L003_R1 unaligned CPTAC3 d0c5e624-5072-443b-b858-eafbc43da6dd e079e6059b244315bc2492137c40eb0a {"aliquot_tag": "ALQ_1f28cc0", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02602.miRNA-Seq.S35_L003_R1.A C3L-02602 UCEC miRNA-Seq tissue_normal CPT0113930009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L003_R1_001.unaln.bam 253384316 BAM S35_L003_R1 unaligned CPTAC3 a72aa29f-2963-41e6-bf70-62586e46e74a 9028c8ceec11674f13141598ad6e1519 {"aliquot_tag": "ALQ_eb8dc231", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.miRNA-Seq.T.hg38 C3L-02602 UCEC miRNA-Seq tumor CPT0113910006 92f64010-3fcb-417f-a3a1-88f5064fb3ae_mirnaseq_gdc_realn.bam 185484390 BAM harmonized CPTAC3 bdb8c40c-d9b9-4bed-a4e0-51675bb22985 05b38fa36186922e8e85710b4e5c4a16 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.chimeric.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.chimeric.gdc_realn.bam 63316121 BAM chimeric harmonized CPTAC3 77183051-cca0-4b96-b7ba-604656bea46c 797e04911572e8a020e4dfecf57dc51f {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.RNA-Seq.chimeric.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.chimeric.gdc_realn.bam 31533137 BAM chimeric harmonized CPTAC3 e596b6be-1637-4db0-b318-f26aa07a9284 5b7f0215293ba1e141deb0c4e1c39be0 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.chimeric.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.chimeric.gdc_realn.bam 195994368 BAM chimeric harmonized CPTAC3 e1119f60-b0be-4549-b58b-54d685aa79cf ed9dce606bbfccff89018b4c0732ee29 {"aliquot_tag": "ALQ_9b857381", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.genomic.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.genomic.gdc_realn.bam 7958810366 BAM genomic harmonized CPTAC3 be3dfd26-5298-487e-b213-ca0507db14ab 54fe0d9a0d4a27f7f0d10c56df419b8a {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.RNA-Seq.genomic.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.genomic.gdc_realn.bam 10778193780 BAM genomic harmonized CPTAC3 df1f0573-b50d-4b50-b986-58ad93c35b16 0f66efe1eefcd118cd21ee3bf6831370 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.genomic.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.genomic.gdc_realn.bam 11849086273 BAM genomic harmonized CPTAC3 6d8a7a7f-a66b-40cd-9595-2f041896fd12 d6fa67394ab78baca6bed8322c295941 {"aliquot_tag": "ALQ_9b857381", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.S12_L003_R1.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4665028403 FASTQ S12_L003_R1 unaligned CPTAC3 90d6f0a0-a3f7-497d-a876-77a58f6dea3e cc3fe43424e3d5c1c8dc946ab4151766 {"aliquot_tag": "ALQ_1f28cc0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.S12_L003_R2.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 5058612340 FASTQ S12_L003_R2 unaligned CPTAC3 112bfd35-f6a1-425d-96c4-b123f852ae4b a5a0645ee8c81c444866d7816d8a6f05 {"aliquot_tag": "ALQ_1f28cc0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.S20_L007_R1.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R1_001.fastq.gz 3788349906 FASTQ S20_L007_R1 unaligned CPTAC3 035da6f8-64e8-4bf8-9187-3830ed902225 aef1974004a771c7679a3f24a42b79ea {"aliquot_tag": "ALQ_eb8dc231", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.RNA-Seq.S20_L007_R2.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R2_001.fastq.gz 4223841174 FASTQ S20_L007_R2 unaligned CPTAC3 f8148ef7-a85c-4263-9ba0-7af1b18eac26 4f0dc3528d84fb38a72dc79ededd08eb {"aliquot_tag": "ALQ_eb8dc231", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.RNA-Seq.S25_R1.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R1_001.fastq.gz 7178642367 FASTQ S25_R1 unaligned CPTAC3 0173247e-5107-4bd1-a417-6bbdb214b1d0 5a737d097fe57194e27f615c152e6bb5 {"aliquot_tag": "ALQ_9b857381", "sample": "S25", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.S25_R2.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R2_001.fastq.gz 7436271333 FASTQ S25_R2 unaligned CPTAC3 d0fafdd0-190b-40cb-b63c-003d0c7b4e5e 79f766fa740dca9f93ec09884242b59d {"aliquot_tag": "ALQ_9b857381", "sample": "S25", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.transcriptome.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.transcriptome.gdc_realn.bam 10025389286 BAM transcriptome harmonized CPTAC3 d34d389b-7d5c-4125-a974-f1b512bd9005 b64cb6084850adc63adbdeb510722f52 {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.RNA-Seq.transcriptome.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.transcriptome.gdc_realn.bam 12815666421 BAM transcriptome harmonized CPTAC3 3d71438b-4972-495c-a81c-34b6327bc972 4aa78da2e79d5c7bcacf76a383e81b36 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor"} -C3L-02602.RNA-Seq.transcriptome.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.transcriptome.gdc_realn.bam 6690847312 BAM transcriptome harmonized CPTAC3 c96fb90f-7b64-42b5-ad50-573ae8c017c6 5ecbba0091e1e12c0cd2531428b37f20 {"aliquot_tag": "ALQ_9b857381", "gdc_sample_type": "Primary Tumor"} -C3L-02602.WGS.A C3L-02602 UCEC WGS tissue_normal CPT0113930006 CPT0113930006.WholeGenome.RP-1303.bam 58475680309 BAM aligned CPTAC3 05c80092-9097-4a6a-9e2f-d20578932873 73c8253c00240a5aa96ec7652eaeff6d {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.WGS.A.hg38 C3L-02602 UCEC WGS tissue_normal CPT0113930006 37643280-6285-466c-a679-13b543909986_wgs_gdc_realn.bam 84684115546 BAM harmonized CPTAC3 8f652206-3d1c-4837-baa8-03be64a04fe7 ef6dbf2b906b688db3bdd8d382298e85 {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.WGS.N C3L-02602 UCEC WGS blood_normal CPT0115300002 CPT0115300002.WholeGenome.RP-1303.bam 56569720415 BAM aligned CPTAC3 e1a00435-d255-490f-818b-686f133ce062 d66fc5f3bd989ef97377d7f478b983c9 {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal"} -C3L-02602.WGS.N.hg38 C3L-02602 UCEC WGS blood_normal CPT0115300002 a533de60-7921-47d7-82c1-bd2d9b73ef9c_wgs_gdc_realn.bam 82470368471 BAM harmonized CPTAC3 e391ccbd-1947-48b4-8658-60ef8411dad7 9d6234123ab7f6d14aa1f8e202f39990 {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal"} -C3L-02602.WGS.T C3L-02602 UCEC WGS tumor CPT0113910009 CPT0113910009.WholeGenome.RP-1303.bam 60424191853 BAM aligned CPTAC3 887d65dd-4c4c-420b-82cf-7535988d9033 b77dfe3506583bb156128e8bfa0c35ff {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor"} -C3L-02602.WGS.T.hg38 C3L-02602 UCEC WGS tumor CPT0113910009 a1142ae5-42db-4459-9da0-6c3058c66390_wgs_gdc_realn.bam 86619080112 BAM harmonized CPTAC3 62948b80-945c-4b63-9af1-faa3be23f973 4e1cb0b1e908dfece27450974dd7b2a1 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor"} -C3L-02602.WXS.A C3L-02602 UCEC WXS tissue_normal CPT0113930006 CPT0113930006.WholeExome.RP-1303.bam 18055133420 BAM aligned CPTAC3 a74bcd58-e1fa-4128-83a3-2ce09eb774e6 a85348614013abeeb3f31e80e1ab1cff {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.WXS.A.hg38 C3L-02602 UCEC WXS tissue_normal CPT0113930006 37643280-6285-466c-a679-13b543909986_wxs_gdc_realn.bam 25696904515 BAM harmonized CPTAC3 d4b235cb-5d3c-42e5-8653-cd0375f55945 c6dca2b1baff81459eca5dd75b150b13 {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02602.WXS.N C3L-02602 UCEC WXS blood_normal CPT0115300002 CPT0115300002.WholeExome.RP-1303.bam 29780154299 BAM aligned CPTAC3 9f07f623-2de1-4c20-9d9b-e3b33e11e4e0 e53727c93ee5fbc7dd6d80c65662705f {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal"} -C3L-02602.WXS.N.hg38 C3L-02602 UCEC WXS blood_normal CPT0115300002 a533de60-7921-47d7-82c1-bd2d9b73ef9c_wxs_gdc_realn.bam 40774684594 BAM harmonized CPTAC3 e1b53777-dea7-4a26-837e-a782d38ad947 4cd844d8f19c6e7af8b0d7e44418aabf {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal"} -C3L-02602.WXS.T C3L-02602 UCEC WXS tumor CPT0113910009 CPT0113910009.WholeExome.RP-1303.bam 26462885517 BAM aligned CPTAC3 a05c82c1-78bb-4417-a1eb-e72b0e3e265e 9f739d46067ae42fdcac5839947f8ee1 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor"} -C3L-02602.WXS.T.hg38 C3L-02602 UCEC WXS tumor CPT0113910009 a1142ae5-42db-4459-9da0-6c3058c66390_wxs_gdc_realn.bam 36868069337 BAM harmonized CPTAC3 7940fc2b-0fb0-48c4-acb7-4cea5e165bd5 02cfd363415dfdc1b16add1a3713e137 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor"} -C3L-02604.MethArray.Green.T C3L-02604 PDA Methylation_Array tumor CPT0161770007 203561620132_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 763f2b99-40f9-4a68-946c-f4c744e8b194 e7ac1eb0fbb0b9919e871d547c8f3f0c {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02604.MethArray.Red.T C3L-02604 PDA Methylation_Array tumor CPT0161770007 203561620132_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 d9e43f16-f2c2-48a1-b60c-fa4253b603b5 3c3cd770806bfd7fe1258565710ec6a2 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02604.miRNA-Seq.S14_L006_R1.T C3L-02604 PDA miRNA-Seq tumor CPT0161770010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTAGCT_S14_L006_R1_001.unaln.bam 233539113 BAM S14_L006_R1 unaligned CPTAC3 afd5c6e0-5e04-4b70-8908-65d8f9988e5b 15a7e4a469b3f6d0c610d5c4814f2c36 {"aliquot_tag": "ALQ_d99a9454", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02604.miRNA-Seq.T.hg38 C3L-02604 PDA miRNA-Seq tumor CPT0161770010 a0be44dd-7f14-43bc-ba05-806b82bece49_mirnaseq_gdc_realn.bam 261460697 BAM harmonized CPTAC3 bdb0fe01-f85d-4058-ab12-f9887b03cd07 dce1185e47fd58d383f39ec24b3a63f3 {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor"} -C3L-02604.RNA-Seq.chimeric.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.chimeric.gdc_realn.bam 43207533 BAM chimeric harmonized CPTAC3 7c14f489-2ba8-4f0e-8c0a-814037e22fe4 59c72a8aa0fe4de91730cdabed0beaec {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor"} -C3L-02604.RNA-Seq.genomic.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.genomic.gdc_realn.bam 11647966799 BAM genomic harmonized CPTAC3 e6bc2450-bf04-4546-9420-3c92bde38d36 75c96b74ade79c4d58f18875bd23a4d9 {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor"} -C3L-02604.RNA-Seq.S13_L004_R1.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R1_001.fastq.gz 4590116935 FASTQ S13_L004_R1 unaligned CPTAC3 204bc201-be60-4cb9-bcee-debfff70a7c1 f9ce7c0e5d4ffd505e29d2907a97c932 {"aliquot_tag": "ALQ_d99a9454", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02604.RNA-Seq.S13_L004_R2.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R2_001.fastq.gz 5190498664 FASTQ S13_L004_R2 unaligned CPTAC3 58337ccb-2919-4c42-9772-a0d4e90eeb49 3a7a5e6bf7ad9af2a2bdc1ffa1d8d4aa {"aliquot_tag": "ALQ_d99a9454", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02604.RNA-Seq.transcriptome.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.transcriptome.gdc_realn.bam 12186736495 BAM transcriptome harmonized CPTAC3 6b85707f-457e-4a91-8a03-b6f04f6f0b1c 2283af23db0ae6fa9bb3f57085953fcb {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor"} -C3L-02604.Targeted.T C3L-02604 PDA Targeted_Sequencing tumor CPT0161770007 CPT0161770007.CustomSelection.RP-1303.PDO-18786.bam 5140603040 BAM aligned CPTAC3 1adeb86d-61f5-4ee0-be21-0ea6ba238fc8 ce7a1ff3ccb580a3cdf7905dfcd34fcf {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02604.Targeted.T.hg38 C3L-02604 PDA Targeted_Sequencing tumor CPT0161770007 1271bc97-9a0a-4153-90cb-a4eb8490761f_targetedsequencing_gdc_realn.bam 7115684385 BAM harmonized CPTAC3 9729ed42-7ea7-46c2-8194-e15fd9732283 8c3e4835526d2939c5e0bfbc3b194546 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02604.WGS.N C3L-02604 PDA WGS blood_normal CPT0162550002 CPT0162550002.WholeGenome.RP-1303.bam 57472863467 BAM aligned CPTAC3 43c05f30-fa31-44a7-a300-351f1f7d7115 6e373d0e06baad6c356a6208a1638bde {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02604.WGS.N.hg38 C3L-02604 PDA WGS blood_normal CPT0162550002 4cc2c3ab-2ccb-4ea9-b9b0-614e548fa19a_wgs_gdc_realn.bam 84280070118 BAM harmonized CPTAC3 3ea37c92-8b4e-412f-835e-f5927190bfd5 6a4d2349a8f7ff56edfaeed091abf6d7 {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02604.WGS.T C3L-02604 PDA WGS tumor CPT0161770007 CPT0161770007.WholeGenome.RP-1303.bam 97405520882 BAM aligned CPTAC3 9a1a77da-b295-43f2-bf44-aedc7d7f12fb e104946bc5fa2fbd8d1dc4bf874856e7 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02604.WGS.T.hg38 C3L-02604 PDA WGS tumor CPT0161770007 1271bc97-9a0a-4153-90cb-a4eb8490761f_wgs_gdc_realn.bam 138947904587 BAM harmonized CPTAC3 2dcf5112-827e-4169-8e26-67e02ff297e6 30faf24721da1ff433775966192445d1 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02604.WXS.N C3L-02604 PDA WXS blood_normal CPT0162550002 CPT0162550002.WholeExome.RP-1303.bam 24959257052 BAM aligned CPTAC3 024a6209-bdb1-4909-8953-98f379377a25 5bf46c8b857236f8d21c712e162c520f {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02604.WXS.N.hg38 C3L-02604 PDA WXS blood_normal CPT0162550002 4cc2c3ab-2ccb-4ea9-b9b0-614e548fa19a_wxs_gdc_realn.bam 34292993584 BAM harmonized CPTAC3 c6cce528-cf2e-4b13-8aac-0c86bf947b98 2f106e60ef0492347c5360bc08fc3126 {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02604.WXS.T C3L-02604 PDA WXS tumor CPT0161770007 CPT0161770007.WholeExome.RP-1303.bam 50749842088 BAM aligned CPTAC3 4cf41607-d548-4a13-93e4-0eb7663f54d8 565abaa9dc5b08e7794fa451e4b6f300 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02604.WXS.T.hg38 C3L-02604 PDA WXS tumor CPT0161770007 1271bc97-9a0a-4153-90cb-a4eb8490761f_wxs_gdc_realn.bam 69700188574 BAM harmonized CPTAC3 cd085b77-973b-4687-8476-ab0725a57ba6 51e6424ded6b2fb7c6a7b9377b895320 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor"} -C3L-02606.MethArray.Green.A C3L-02606 PDA Methylation_Array tissue_normal CPT0124530006 203561620012_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 964966e1-a38a-4e98-8492-2617fcc34f20 028dd989b9783b4e40511f75f5de9994 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.MethArray.Green.T C3L-02606 PDA Methylation_Array tumor CPT0124500006 203028200093_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 faeb084f-cdf6-43b6-8ef7-d19aa7b604d4 8fc49fc9593aec944c91f24935089d55 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor"} -C3L-02606.MethArray.Red.A C3L-02606 PDA Methylation_Array tissue_normal CPT0124530006 203561620012_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 0ee407d7-0ea9-420c-8833-8284131738b4 bf5a8b13b0c28651673681ad24f7bb31 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.MethArray.Red.T C3L-02606 PDA Methylation_Array tumor CPT0124500006 203028200093_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 8a3df311-f263-466a-8dda-220260fbaf80 0d58005fc09852635877557c66cf32fd {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor"} -C3L-02606.miRNA-Seq.A.hg38 C3L-02606 PDA miRNA-Seq tissue_normal CPT0124530009 192b8f8d-71df-4d64-be78-a4b754ac9624_mirnaseq_gdc_realn.bam 203648206 BAM harmonized CPTAC3 59ef9aff-c557-4ea3-8bfc-c99936de562d dcba009d99d18aabc772e876f0a1b835 {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.miRNA-Seq.S17_L001_R1.A C3L-02606 PDA miRNA-Seq tissue_normal CPT0124530009 181108_UNC31-K00269_0162_AH255GBBXY_GACGAC_S17_L001_R1_001.unaln.bam 184703806 BAM S17_L001_R1 unaligned CPTAC3 3bf81012-925a-4649-98ef-26723f3e0b9f 130de6b7af5e3cb0ab76f4e372c3eda9 {"aliquot_tag": "ALQ_d7673b27", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.miRNA-Seq.S36_L002_R1.T C3L-02606 PDA miRNA-Seq tumor CPT0124500010 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 312675867 BAM S36_L002_R1 unaligned CPTAC3 0744bebc-4c4d-4fa3-b67e-134c100d4823 030e3fae57fcc2b26e0b312ee8c048d1 {"aliquot_tag": "ALQ_f000c812", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02606.miRNA-Seq.T.hg38 C3L-02606 PDA miRNA-Seq tumor CPT0124500010 c9c6b80f-1112-4e47-9865-d0745d771ef5_mirnaseq_gdc_realn.bam 342715829 BAM harmonized CPTAC3 31d01e5a-fd6f-4b93-9ac2-ecc3ea954853 8eecd833e77b10b95c9a1e23b71b41d2 {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor"} -C3L-02606.RNA-Seq.chimeric.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.chimeric.gdc_realn.bam 42838463 BAM chimeric harmonized CPTAC3 ec4e2f09-d09f-4203-86cc-bab3cdaac9b6 a8f6bd7304ea51056fdce3c980be2fae {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.RNA-Seq.chimeric.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.chimeric.gdc_realn.bam 158877207 BAM chimeric harmonized CPTAC3 57873112-63a2-40d8-b35c-4e8d70b304cb 5ac8ec48444c880302f53a31400656a3 {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor"} -C3L-02606.RNA-Seq.genomic.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.genomic.gdc_realn.bam 10958566926 BAM genomic harmonized CPTAC3 8c26b9d8-b65a-48fb-a1a5-202964e62410 6155857e45489ee07afee3e5bcc67526 {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.RNA-Seq.genomic.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.genomic.gdc_realn.bam 7776690651 BAM genomic harmonized CPTAC3 268e0553-5c82-485c-9da7-fafebb1ba4cf 2d7ba1e223419f0f45922f4c21e16a80 {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor"} -C3L-02606.RNA-Seq.S15_L004_R1.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R1_001.fastq.gz 4128817461 FASTQ S15_L004_R1 unaligned CPTAC3 a23673c8-562a-421e-b235-47642a82c5f2 d6fc070ba06d64f22aca93cbce6c37fc {"aliquot_tag": "ALQ_d7673b27", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.RNA-Seq.S15_L004_R2.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R2_001.fastq.gz 4686627777 FASTQ S15_L004_R2 unaligned CPTAC3 8f6a4f28-bf7e-4b44-8627-170a453a7c29 26a5d4e5a1cf29ea62a1eed74f8e96d7 {"aliquot_tag": "ALQ_d7673b27", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.RNA-Seq.S8_L002_R1.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R1_001.fastq.gz 3523165616 FASTQ S8_L002_R1 unaligned CPTAC3 5c886d75-3eda-4164-bbde-589182b17c58 774dfed5065c21db6a2026a5a47afa4e {"aliquot_tag": "ALQ_f000c812", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02606.RNA-Seq.S8_L002_R2.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R2_001.fastq.gz 3811079079 FASTQ S8_L002_R2 unaligned CPTAC3 090a41ea-c68c-4947-891f-2dcc24b73a29 cb429705c1a31614f096130084e3ab12 {"aliquot_tag": "ALQ_f000c812", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02606.RNA-Seq.transcriptome.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.transcriptome.gdc_realn.bam 11070014819 BAM transcriptome harmonized CPTAC3 355ef197-ad6b-43b5-b8e9-0cf3aacb6256 d77816a1a3c50a19688f627e23836cf8 {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.RNA-Seq.transcriptome.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.transcriptome.gdc_realn.bam 9439698772 BAM transcriptome harmonized CPTAC3 88af3d80-b14e-42db-963a-02cf59c08598 1f97c183248e3266b557b2ffed51fdaf {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor"} -C3L-02606.WGS.A C3L-02606 PDA WGS tissue_normal CPT0124530006 CPT0124530006.WholeGenome.RP-1303.bam 63974015393 BAM aligned CPTAC3 f0c4d75f-9f22-4739-8b5d-100deb5bc275 e0df584ff959f71a270bdbc550d25c26 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.WGS.A.hg38 C3L-02606 PDA WGS tissue_normal CPT0124530006 df7009c7-71a8-405d-b9fe-fbee51e44f43_wgs_gdc_realn.bam 92880510841 BAM harmonized CPTAC3 415a5e48-511d-403f-a43a-b1d7166249e1 97d5741b167150665f20ef4387666972 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.WGS.N C3L-02606 PDA WGS blood_normal CPT0124540002 CPT0124540002.WholeGenome.RP-1303.bam 61877250451 BAM aligned CPTAC3 645e3bb2-4566-4cda-987a-af58e7087825 9f6ddb4e7fd5be72893da9d08ddad60c {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02606.WGS.N.hg38 C3L-02606 PDA WGS blood_normal CPT0124540002 eb5ad77e-ab33-42a2-8526-9d0977b9c4e5_wgs_gdc_realn.bam 90437550932 BAM harmonized CPTAC3 fdc30e48-1bb7-4ca9-abbb-278a8736d327 cf2a2c820f4f08544c0c13b0e2371bb7 {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02606.WGS.T C3L-02606 PDA WGS tumor CPT0124500006 CPT0124500006.WholeGenome.RP-1303.bam 73414235444 BAM aligned CPTAC3 8dacc095-6d37-43ee-8094-3279fd2e0b43 ad247fb7adda55480df891c030f04ba6 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor"} -C3L-02606.WGS.T.hg38 C3L-02606 PDA WGS tumor CPT0124500006 204fcb46-d792-4b61-92ab-9650ca2ee9d3_wgs_gdc_realn.bam 109131748941 BAM harmonized CPTAC3 1bc496dd-efd0-476c-b582-1b4b2176c948 b204cc243be809ad515027af4baeaf0d {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor"} -C3L-02606.WXS.A C3L-02606 PDA WXS tissue_normal CPT0124530006 CPT0124530006.WholeExome.RP-1303.bam 33223050952 BAM aligned CPTAC3 04fe228d-d8b6-474d-a353-59b585be8e75 6a05fca9e63d28a4b12cd08d51813f15 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.WXS.A.hg38 C3L-02606 PDA WXS tissue_normal CPT0124530006 df7009c7-71a8-405d-b9fe-fbee51e44f43_wxs_gdc_realn.bam 47062705244 BAM harmonized CPTAC3 732f993e-c356-4977-ab17-ec4f03a04274 e18251e0b50351c76cf58fdd8e1a2d56 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02606.WXS.N C3L-02606 PDA WXS blood_normal CPT0124540002 CPT0124540002.WholeExome.RP-1303.bam 30074299045 BAM aligned CPTAC3 1ec96cde-0b4a-4f1a-8878-d4b76ca63f9b 7ed9a547370fcb393aba7714592daaf2 {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02606.WXS.N.hg38 C3L-02606 PDA WXS blood_normal CPT0124540002 eb5ad77e-ab33-42a2-8526-9d0977b9c4e5_wxs_gdc_realn.bam 40082927074 BAM harmonized CPTAC3 afe3616b-0a2a-4ee2-b086-0ad1c52a2eb0 f822bca48c3d6d36681f6796e03a1592 {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02606.WXS.T C3L-02606 PDA WXS tumor CPT0124500006_1 CPT0124500006_1.WholeExome.RP-1303.bam 61486150317 BAM aligned CPTAC3 2ec18559-88f3-4e2d-af04-0d75e3e9c545 c1b0dbf0fa0edd0a2f8f7ce04ed601a6 {"aliquot_tag": "ALQ_7c5e82d8", "gdc_sample_type": "Primary Tumor"} -C3L-02606.WXS.T C3L-02606 PDA WXS tumor CPT0124500006 CPT0124500006.WholeExome.RP-1303.bam 33271514488 BAM aligned CPTAC3 e9685e18-0758-46cc-81d6-6b2d60ef958f d43f57d60683914508143e7e12dba412 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor"} -C3L-02606.WXS.T.hg38 C3L-02606 PDA WXS tumor CPT0124500006_1 614514be-35d7-40aa-923c-9d7f560c6f21_wxs_gdc_realn.bam 83560686243 BAM harmonized CPTAC3 28ba1938-a8f8-4f18-a49c-90fce6ee9965 2804b1d7d96810f9359f9750eb4a9d82 {"aliquot_tag": "ALQ_7c5e82d8", "gdc_sample_type": "Primary Tumor"} -C3L-02606.WXS.T.hg38 C3L-02606 PDA WXS tumor CPT0124500006 204fcb46-d792-4b61-92ab-9650ca2ee9d3_wxs_gdc_realn.bam 44679582880 BAM harmonized CPTAC3 fba85257-aae5-487f-aa27-fccbc9dce9d0 2e0aae0d11aec94d5b0bcb033b0fea07 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor"} -C3L-02610.MethArray.Green.A C3L-02610 PDA Methylation_Array tissue_normal CPT0125010006 203561450068_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 68ecffe3-cf1b-4b5a-a8f5-06bda3996c74 9f501667914308dc0868945250fa16fd {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.MethArray.Green.T C3L-02610 PDA Methylation_Array tumor CPT0124980007 203028200104_R02C01_Grn.idat 13676238 IDAT Green NA CPTAC3 a53642d2-b232-4d2a-abc7-859cd92dd32d 59cf41195edae2be9af87ecc727b5bb3 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor"} -C3L-02610.MethArray.Red.A C3L-02610 PDA Methylation_Array tissue_normal CPT0125010006 203561450068_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 008abcfc-4a31-4090-b342-78914e27b985 28db9105d4294e3f9bc91bf73cc11cbf {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.MethArray.Red.T C3L-02610 PDA Methylation_Array tumor CPT0124980007 203028200104_R02C01_Red.idat 13676238 IDAT Red NA CPTAC3 2ed088ce-77da-4f12-a994-34831dbaf1ba ceff818866d0128e972d88b197b098fe {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor"} -C3L-02610.miRNA-Seq.A.hg38 C3L-02610 PDA miRNA-Seq tissue_normal CPT0125010009 79304fdd-90e8-4ca3-a8be-8e0678db0863_mirnaseq_gdc_realn.bam 189847727 BAM harmonized CPTAC3 f634cd95-3a0e-4a80-8c34-183229a10668 9d63d64864527feb0ce5956212620563 {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.miRNA-Seq.S19_L001_R1.A C3L-02610 PDA miRNA-Seq tissue_normal CPT0125010009 181108_UNC31-K00269_0162_AH255GBBXY_TACAGC_S19_L001_R1_001.unaln.bam 171374498 BAM S19_L001_R1 unaligned CPTAC3 f7a759cf-97b2-4ec8-9524-a93abcf6ca70 ce48273daf1c05a28dd8accd1e7930cf {"aliquot_tag": "ALQ_5b1df240", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.miRNA-Seq.S38_L002_R1.T C3L-02610 PDA miRNA-Seq tumor CPT0124980010 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 262196368 BAM S38_L002_R1 unaligned CPTAC3 54d22624-96fc-4244-b572-c59ca63a47a6 fd615a40a0358a0f129c03dbaaaf41c2 {"aliquot_tag": "ALQ_b7b243a8", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02610.miRNA-Seq.T.hg38 C3L-02610 PDA miRNA-Seq tumor CPT0124980010 77484bbd-aa98-4334-a708-c65f0033c11d_mirnaseq_gdc_realn.bam 292226022 BAM harmonized CPTAC3 385c13cf-963b-4c2d-a662-0f3e9ca243ca 6e067b89d6615df8707cbd88f44e911b {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor"} -C3L-02610.RNA-Seq.chimeric.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.chimeric.gdc_realn.bam 61416456 BAM chimeric harmonized CPTAC3 369e64b6-dc4a-4ab6-b85a-f9a2b0749d3a 240b480e08ae87d1bbcf11e431e45e54 {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.RNA-Seq.chimeric.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.chimeric.gdc_realn.bam 107268717 BAM chimeric harmonized CPTAC3 6bbb725b-a652-4301-b3e7-8d30d4fc0c3e da5657381dc527270b317b2623b59520 {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor"} -C3L-02610.RNA-Seq.genomic.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.genomic.gdc_realn.bam 10959148907 BAM genomic harmonized CPTAC3 d2be85f4-03a2-42c9-95a7-afcd229d9ddf cb9c1e77c5c3f0c52e7acd68fe79a6a5 {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.RNA-Seq.genomic.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.genomic.gdc_realn.bam 7449704292 BAM genomic harmonized CPTAC3 5ad49cd2-dc95-4e46-8c32-50ff7ec2d61e 2d3a42226dbbd61c54549f5c7e1db5d8 {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor"} -C3L-02610.RNA-Seq.S14_L004_R1.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R1_001.fastq.gz 3958657777 FASTQ S14_L004_R1 unaligned CPTAC3 d888a4c7-71dc-4b3c-80d4-53e83ec6374a 4ef3533f16cd22c7c256dcbfa7447e20 {"aliquot_tag": "ALQ_5b1df240", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.RNA-Seq.S14_L004_R2.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R2_001.fastq.gz 4420071584 FASTQ S14_L004_R2 unaligned CPTAC3 937e7f27-44e7-4288-9723-95c10f841789 62fba495822bc94743c72637056e4321 {"aliquot_tag": "ALQ_5b1df240", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.RNA-Seq.S3_L001_R1.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3419241932 FASTQ S3_L001_R1 unaligned CPTAC3 fd11aa88-b072-423d-8983-f59a2275eeae dcb4aaa93ff28eb7bdf8af20afeaad91 {"aliquot_tag": "ALQ_b7b243a8", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02610.RNA-Seq.S3_L001_R2.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 3676479320 FASTQ S3_L001_R2 unaligned CPTAC3 c9d906a9-491e-4e3b-90a6-d3c466b8cc1e 3c27cb8cb6f0f0a7ebf5f73f33c664fa {"aliquot_tag": "ALQ_b7b243a8", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02610.RNA-Seq.transcriptome.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.transcriptome.gdc_realn.bam 10834598909 BAM transcriptome harmonized CPTAC3 57d38093-d775-473f-9682-4bd07b96b2e3 65f242299a41353d0ff31e514ab30bbd {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.RNA-Seq.transcriptome.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.transcriptome.gdc_realn.bam 9900369175 BAM transcriptome harmonized CPTAC3 086d1152-f9f2-498e-956d-cf11dd793153 42845f3646bb777a8f016ac721fc5ac5 {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor"} -C3L-02610.WGS.A C3L-02610 PDA WGS tissue_normal CPT0125010006 CPT0125010006.WholeGenome.RP-1303.bam 67222301816 BAM aligned CPTAC3 b45a506a-24e3-4794-8e00-a2ae50e073e3 fc37f03d74caa2d5720b31c026566ad0 {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.WGS.A.hg38 C3L-02610 PDA WGS tissue_normal CPT0125010006 87b5c90c-3fa7-4f0e-bd93-94faaf30ad69_wgs_gdc_realn.bam 97109911504 BAM harmonized CPTAC3 2855f59a-5e69-4993-b66a-4035a5a1b490 42eaf9586ae0d33ae1c3f740421a94be {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.WGS.N C3L-02610 PDA WGS blood_normal CPT0125020002 CPT0125020002.WholeGenome.RP-1303.bam 54103804942 BAM aligned CPTAC3 b644be10-bd4d-448c-b990-ac8301cb3fc8 87195094daa7f80179ea64a95b997d29 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal"} -C3L-02610.WGS.N.hg38 C3L-02610 PDA WGS blood_normal CPT0125020002 3d43384f-69ee-4acd-8530-1e3dd032f2ce_wgs_gdc_realn.bam 79718041622 BAM harmonized CPTAC3 f9a3cc94-ab41-4d40-a283-58495f124c1f f4692096592b94f4e496359095474da4 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal"} -C3L-02610.WGS.T C3L-02610 PDA WGS tumor CPT0124980007 CPT0124980007.WholeGenome.RP-1303.bam 63747011989 BAM aligned CPTAC3 530ac696-35ab-4352-810d-f692ebc98d15 f5c04104169e69b6b64092e30872f557 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor"} -C3L-02610.WGS.T.hg38 C3L-02610 PDA WGS tumor CPT0124980007 e8d1c4ee-7bd2-4984-968a-382777d990de_wgs_gdc_realn.bam 93317031707 BAM harmonized CPTAC3 25d168e6-e000-4132-952d-84355fa8097f 89c70c1ae8850f6d933e8605b45c9eb3 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor"} -C3L-02610.WXS.A C3L-02610 PDA WXS tissue_normal CPT0125010006 CPT0125010006.WholeExome.RP-1303.bam 28372501622 BAM aligned CPTAC3 abbe6277-a575-4176-824f-086122e64c56 66b575eb532045733a67d9ac1480728c {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.WXS.A.hg38 C3L-02610 PDA WXS tissue_normal CPT0125010006 87b5c90c-3fa7-4f0e-bd93-94faaf30ad69_wxs_gdc_realn.bam 39596894877 BAM harmonized CPTAC3 5b547da5-d5f6-4c60-8d0f-66126dc89ceb 2c597bf02e60cd7fc534762a1cddf19a {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02610.WXS.N C3L-02610 PDA WXS blood_normal CPT0125020002 CPT0125020002.WholeExome.RP-1303.bam 29947906728 BAM aligned CPTAC3 797b4aa1-4caf-427c-9a4d-bc772024cfd1 336bc01d57e4172f8fd9269b2e2115e2 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal"} -C3L-02610.WXS.N.hg38 C3L-02610 PDA WXS blood_normal CPT0125020002 3d43384f-69ee-4acd-8530-1e3dd032f2ce_wxs_gdc_realn.bam 40165961588 BAM harmonized CPTAC3 cb627c7d-0371-41ea-a1ed-0688d7ed1ab7 1c1813ec9dca9ed9e9b14b2735fb1845 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal"} -C3L-02610.WXS.T C3L-02610 PDA WXS tumor CPT0124980007_1 CPT0124980007_1.WholeExome.RP-1303.bam 44573679634 BAM aligned CPTAC3 6a0548b4-ac35-493e-8a21-6de91e42f569 e682e803bddd867a9f731817a774f23f {"aliquot_tag": "ALQ_19dcb3c7", "gdc_sample_type": "Primary Tumor"} -C3L-02610.WXS.T C3L-02610 PDA WXS tumor CPT0124980007 CPT0124980007.WholeExome.RP-1303.bam 26608854274 BAM aligned CPTAC3 e71161ef-4d2e-4dcf-af50-11e9f86ec278 30e9a74ede67132c3fdeabcf899718f8 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor"} -C3L-02610.WXS.T.hg38 C3L-02610 PDA WXS tumor CPT0124980007_1 8cd32acc-677e-4115-9303-92118b5dce5b_wxs_gdc_realn.bam 60660534292 BAM harmonized CPTAC3 aaf1f3a3-17ba-49f4-8322-803ff1f4844d 7a8031b9a0d2a8dafbab6ac9ab80a153 {"aliquot_tag": "ALQ_19dcb3c7", "gdc_sample_type": "Primary Tumor"} -C3L-02610.WXS.T.hg38 C3L-02610 PDA WXS tumor CPT0124980007 e8d1c4ee-7bd2-4984-968a-382777d990de_wxs_gdc_realn.bam 35604883400 BAM harmonized CPTAC3 6eae0a69-3a85-47e5-85bc-36349cbbf8f8 31ce18bac2562563252e39c73e129ceb {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor"} -C3L-02613.MethArray.Green.A C3L-02613 PDA Methylation_Array tissue_normal CPT0124630006 203561450084_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 228b4f8a-b417-496a-abac-2361c6c44171 afebb3b5f6f58a6072b40aca106de346 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.MethArray.Green.T C3L-02613 PDA Methylation_Array tumor CPT0124610007 203027390078_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4862c146-9e92-4c77-a214-5a389a681686 7d4362a7a7d201731567369364aab8ec {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor"} -C3L-02613.MethArray.Red.A C3L-02613 PDA Methylation_Array tissue_normal CPT0124630006 203561450084_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 d76a8b09-c68f-422c-a651-2e3538511583 7f17f22712d82176a5e4c33903ad91a9 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.MethArray.Red.T C3L-02613 PDA Methylation_Array tumor CPT0124610007 203027390078_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 7859b2bd-0c92-4e7d-b8dc-775146862600 4ebe063229aebc24e55cb4ea02ccca9c {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor"} -C3L-02613.miRNA-Seq.A.hg38 C3L-02613 PDA miRNA-Seq tissue_normal CPT0124630009 a77b73a5-927a-4f15-b6b7-5e443236873d_mirnaseq_gdc_realn.bam 199590653 BAM harmonized CPTAC3 58f6a181-29dd-4520-b1d1-f8991b5d5d4a fdcf2d6ab59d0ef2d69604ce8f3cc9fe {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.miRNA-Seq.S18_L001_R1.A C3L-02613 PDA miRNA-Seq tissue_normal CPT0124630009 181108_UNC31-K00269_0162_AH255GBBXY_TAATCG_S18_L001_R1_001.unaln.bam 182406619 BAM S18_L001_R1 unaligned CPTAC3 8d2becfb-7fea-4850-8fe5-979ab915e3f1 8900285277418dd2c37ff41e815a1332 {"aliquot_tag": "ALQ_51f34989", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.miRNA-Seq.S37_L002_R1.T C3L-02613 PDA miRNA-Seq tumor CPT0124610010 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 206711433 BAM S37_L002_R1 unaligned CPTAC3 4719334a-8d99-4da5-ab31-e40a8d4b64e6 6436e4e4306a2d9db263f5b81cc217ff {"aliquot_tag": "ALQ_4bf4930c", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02613.miRNA-Seq.T.hg38 C3L-02613 PDA miRNA-Seq tumor CPT0124610010 f436c597-6ce0-4729-9d79-6acec46961ea_mirnaseq_gdc_realn.bam 229044470 BAM harmonized CPTAC3 e672995e-8358-406d-abfc-ad4fa3a94430 dd364399ecd3dd018644d163efc3417f {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor"} -C3L-02613.RNA-Seq.chimeric.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.chimeric.gdc_realn.bam 107323475 BAM chimeric harmonized CPTAC3 e42e57ec-a4ac-4570-9f9f-d166f170fac9 b5a9489a988f16a817418b81f95d0704 {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.RNA-Seq.chimeric.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.chimeric.gdc_realn.bam 111675215 BAM chimeric harmonized CPTAC3 eec3cb09-e57d-430e-b7df-9fcdace0cfaa 891029c4e6e2e6b9b79fc6659734da60 {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor"} -C3L-02613.RNA-Seq.genomic.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.genomic.gdc_realn.bam 7296145201 BAM genomic harmonized CPTAC3 8d46ee65-07dc-46a4-b2fb-708cd43b13f3 f9a57cdbd936d2f3aa5969eaf6b39eb6 {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.RNA-Seq.genomic.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.genomic.gdc_realn.bam 8129087461 BAM genomic harmonized CPTAC3 4559b989-2d4d-4128-8df4-1cd482d3be7f d57ce5a9f73dad7c0cde20a9604c3119 {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor"} -C3L-02613.RNA-Seq.S20_L005_R1.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R1_001.fastq.gz 3209811527 FASTQ S20_L005_R1 unaligned CPTAC3 bb6960c6-9c3e-4b5f-97c3-e7da6872ca28 0cdcfe5956621e9aeecc674388e9d6d3 {"aliquot_tag": "ALQ_51f34989", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.RNA-Seq.S20_L005_R2.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R2_001.fastq.gz 3360168099 FASTQ S20_L005_R2 unaligned CPTAC3 8a57f7a7-b6a5-4ca1-86b9-090b05360391 05eecacfe16081d21b2de8ec7d3ae853 {"aliquot_tag": "ALQ_51f34989", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.RNA-Seq.S7_L002_R1.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R1_001.fastq.gz 3645297278 FASTQ S7_L002_R1 unaligned CPTAC3 44bba21e-a3f3-4772-bcc9-fab3b5382c16 3b91039a78fa729d1b1304387c6e9c56 {"aliquot_tag": "ALQ_4bf4930c", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02613.RNA-Seq.S7_L002_R2.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R2_001.fastq.gz 3949826814 FASTQ S7_L002_R2 unaligned CPTAC3 a744f47c-65a7-4686-ad73-10ccea4cb64e 4f2b32fe912e1e95fbd4db77d8747283 {"aliquot_tag": "ALQ_4bf4930c", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02613.RNA-Seq.transcriptome.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.transcriptome.gdc_realn.bam 7566325578 BAM transcriptome harmonized CPTAC3 5e47f0a6-b397-4194-855d-e1069f415991 9d5cb5d412fcce3bb3bb612c6f30a017 {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.RNA-Seq.transcriptome.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.transcriptome.gdc_realn.bam 10526868431 BAM transcriptome harmonized CPTAC3 e1059701-a759-4a0a-b922-e9e726a67e76 cc67e97c59cdf1121718afe3af75ae47 {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor"} -C3L-02613.Targeted.T C3L-02613 PDA Targeted_Sequencing tumor CPT0124610007_1 CPT0124610007_1.CustomSelection.RP-1303.PDO-18786.bam 4885072832 BAM aligned CPTAC3 b5bb87f9-6ce9-46e8-84b2-8e8938c5d016 19ac60d3bba7e61888ab0480f321104b {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor"} -C3L-02613.Targeted.T.hg38 C3L-02613 PDA Targeted_Sequencing tumor CPT0124610007_1 db70cb1d-4e2d-4341-98d3-4aea5e5ea3ca_targetedsequencing_gdc_realn.bam 6839915476 BAM harmonized CPTAC3 e780a93c-3a21-40fa-805b-491dc5671039 851025d87f1da38583efe6729db3848c {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor"} -C3L-02613.WGS.A C3L-02613 PDA WGS tissue_normal CPT0124630006 CPT0124630006.WholeGenome.RP-1303.bam 64816166932 BAM aligned CPTAC3 7949aa71-fce0-4c45-b095-fd9617f43e49 671273e42f67ef82a427cafa00cffebe {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.WGS.A.hg38 C3L-02613 PDA WGS tissue_normal CPT0124630006 aa5a4e26-7ca9-40ae-80f6-160ce81ccfb9_wgs_gdc_realn.bam 95577480709 BAM harmonized CPTAC3 ca35f1d6-4675-450a-8b9f-ffe34e3fd0ce 5ab78c9e24b12c8b6811889f60dd00d0 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.WGS.N C3L-02613 PDA WGS blood_normal CPT0124640002 CPT0124640002.WholeGenome.RP-1303.bam 55360098979 BAM aligned CPTAC3 001a03bf-f435-490b-a4a4-27e77d43d971 e10a4799c042d63322847a661dea7f77 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal"} -C3L-02613.WGS.N.hg38 C3L-02613 PDA WGS blood_normal CPT0124640002 9cffca81-d449-409f-9328-f0b0d9772f82_wgs_gdc_realn.bam 80134401768 BAM harmonized CPTAC3 b79d67fd-6c4c-424f-86cb-5c6f99fd945f ce42099cb442ed75a4f9defc489814f7 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal"} -C3L-02613.WGS.T C3L-02613 PDA WGS tumor CPT0124610007 CPT0124610007.WholeGenome.RP-1303.bam 58884243399 BAM aligned CPTAC3 bcac4b48-1845-4a17-aa4a-14f70847b06b 77eef53c4d9cdf2446a01d06454546eb {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor"} -C3L-02613.WGS.T.hg38 C3L-02613 PDA WGS tumor CPT0124610007 77d62c85-36de-4df8-869f-e652588bcf8a_wgs_gdc_realn.bam 86571982162 BAM harmonized CPTAC3 77b46516-9f34-481d-a1a9-1a96def77fd8 59b127634033c465e0391036b838d914 {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor"} -C3L-02613.WXS.A C3L-02613 PDA WXS tissue_normal CPT0124630006 CPT0124630006.WholeExome.RP-1303.bam 26137475138 BAM aligned CPTAC3 82d9a78e-8649-443f-b1ec-ee6dbaddfde1 e2b3a07975e66e5cd4696d86259f5879 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.WXS.A.hg38 C3L-02613 PDA WXS tissue_normal CPT0124630006 aa5a4e26-7ca9-40ae-80f6-160ce81ccfb9_wxs_gdc_realn.bam 35565384618 BAM harmonized CPTAC3 d32c1f68-c577-4300-9c53-7f76a6ed6112 11a04a7cb28591360220a0acab00b243 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02613.WXS.N C3L-02613 PDA WXS blood_normal CPT0124640002 CPT0124640002.WholeExome.RP-1303.bam 24596603760 BAM aligned CPTAC3 79a29255-7f31-45d9-bd65-f52f5bbaba87 39be73eb9db110d5ca3f42642d2366e7 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal"} -C3L-02613.WXS.N.hg38 C3L-02613 PDA WXS blood_normal CPT0124640002 9cffca81-d449-409f-9328-f0b0d9772f82_wxs_gdc_realn.bam 33003220390 BAM harmonized CPTAC3 67441851-d1cb-40d0-aad2-bd52024f41fb 1bb80b951ad04b3596bc6b3ba2d8d0a4 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal"} -C3L-02613.WXS.T C3L-02613 PDA WXS tumor CPT0124610007_1 CPT0124610007_1.WholeExome.RP-1303.bam 61317612855 BAM aligned CPTAC3 2cd31d82-8288-430a-be3f-6fa1e7e0fe25 fc21b16c4712b486e793f650393923a0 {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor"} -C3L-02613.WXS.T C3L-02613 PDA WXS tumor CPT0124610007 CPT0124610007.WholeExome.RP-1303.bam 28889722767 BAM aligned CPTAC3 48ec5acd-a7f0-4c67-8a26-e72663be71f1 3277a2228a8562e63c8ce724f65fc026 {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor"} -C3L-02613.WXS.T.hg38 C3L-02613 PDA WXS tumor CPT0124610007_1 db70cb1d-4e2d-4341-98d3-4aea5e5ea3ca_wxs_gdc_realn.bam 83419348043 BAM harmonized CPTAC3 715898e2-7575-4a70-8b17-60d4e123d99c 506786c9172edaad3da89cea514f6c75 {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor"} -C3L-02613.WXS.T.hg38 C3L-02613 PDA WXS tumor CPT0124610007 77d62c85-36de-4df8-869f-e652588bcf8a_wxs_gdc_realn.bam 38712293216 BAM harmonized CPTAC3 4e26c6a2-f913-410a-9f9e-afb274c0d487 72531e47a34f77794f8b495ba31ebe0a {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor"} -C3L-02616.MethArray.Green.A C3L-02616 LUAD Methylation_Array tissue_normal CPT0192250006 203219650136_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f8a09345-9367-4afc-a614-35a6cbaa56db ded388a7d659aaf297d0a5f5f03e57cd {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.MethArray.Green.T C3L-02616 LUAD Methylation_Array tumor CPT0192240006 203219720211_R04C01_Grn.idat 13676245 IDAT Green NA CPTAC3 65abfd21-97b4-4c01-9503-00df09c9eedc 6975f38ca3b1986b1abae6b1f018f7f3 {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor"} -C3L-02616.MethArray.Red.A C3L-02616 LUAD Methylation_Array tissue_normal CPT0192250006 203219650136_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 1d3e1816-32a3-46ea-8960-dc69b204aa48 bdbb6c97932fb7e15c630e89a417e626 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.MethArray.Red.T C3L-02616 LUAD Methylation_Array tumor CPT0192240006 203219720211_R04C01_Red.idat 13676245 IDAT Red NA CPTAC3 e662c664-eaa3-4e34-a005-2ceedce118b0 468849ea3016dbec07eadd88202c69a6 {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor"} -C3L-02616.miRNA-Seq.A.hg38 C3L-02616 LUAD miRNA-Seq tissue_normal CPT0192250009 53437b33-121f-44f4-bca0-1b0213f2c3cb_mirnaseq_gdc_realn.bam 248769526 BAM harmonized CPTAC3 bd0ceb50-310a-4275-afa8-d955694568fc 0a6b4daf331c47b6255720ebfef7afd1 {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.miRNA-Seq.S12_L006_R1.A C3L-02616 LUAD miRNA-Seq tissue_normal CPT0192250009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L006_R1_001.unaln.bam 226766378 BAM S12_L006_R1 unaligned CPTAC3 abfc28ef-6c20-4f57-bc48-76a73156fe4b 4cd596ebbb0aaf061d6dad7cded91adc {"aliquot_tag": "ALQ_7b98d753", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.miRNA-Seq.S25_L006_R1.T C3L-02616 LUAD miRNA-Seq tumor CPT0192240009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L006_R1_001.unaln.bam 264893562 BAM S25_L006_R1 unaligned CPTAC3 ea1da1c2-b67d-45b1-a287-30474cf038d3 389300b15eabcc37151b5c85b223cff5 {"aliquot_tag": "ALQ_46f8fee3", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02616.miRNA-Seq.T.hg38 C3L-02616 LUAD miRNA-Seq tumor CPT0192240009 1393ccbb-a44c-4b45-9947-8eba032c2f94_mirnaseq_gdc_realn.bam 291575209 BAM harmonized CPTAC3 cc713805-3e87-4026-9da6-59e775cd37d0 29cd465b1088bd5441afc794db4394f2 {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor"} -C3L-02616.RNA-Seq.chimeric.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.chimeric.gdc_realn.bam 57721606 BAM chimeric harmonized CPTAC3 e9447a83-823b-4043-9270-a5efab294fe5 4d416857b6a09144793f685e3e398daf {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.RNA-Seq.chimeric.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.chimeric.gdc_realn.bam 53889980 BAM chimeric harmonized CPTAC3 5f25fdc9-18b2-44b0-819c-1059fa34a156 fc656bf08ee74457efe45403702ee1bf {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor"} -C3L-02616.RNA-Seq.genomic.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.genomic.gdc_realn.bam 10377179169 BAM genomic harmonized CPTAC3 b3305a05-f039-4c42-8bb0-d2b499812079 499b485910354039e0dd367850170af8 {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.RNA-Seq.genomic.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.genomic.gdc_realn.bam 8853614453 BAM genomic harmonized CPTAC3 bbf1a412-ea24-4db4-b5e7-69294bad52e8 220444d2e6df3f132ee24082c0ccec59 {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor"} -C3L-02616.RNA-Seq.S14_L004_R1.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R1_001.fastq.gz 4315349982 FASTQ S14_L004_R1 unaligned CPTAC3 5ff069db-1f4c-4774-81ee-f309d4328132 0bd084a6b98e82114b3abe8dd4d0968f {"aliquot_tag": "ALQ_7b98d753", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.RNA-Seq.S14_L004_R2.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R2_001.fastq.gz 4928543111 FASTQ S14_L004_R2 unaligned CPTAC3 60c4b618-17e4-4a7c-9e22-7c0edf40e5bb 4297e2a84c4864023f4d2c00d65ea7f6 {"aliquot_tag": "ALQ_7b98d753", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.RNA-Seq.S2_L007_R1.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R1_001.fastq.gz 3893162484 FASTQ S2_L007_R1 unaligned CPTAC3 758d490d-5c7c-4fa6-92db-a0b0bc819c2e 075643cdbb10a991c5cf9df25747d228 {"aliquot_tag": "ALQ_46f8fee3", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02616.RNA-Seq.S2_L007_R2.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R2_001.fastq.gz 4309850934 FASTQ S2_L007_R2 unaligned CPTAC3 8b618071-ac4c-4cdc-bf3a-a0b73b51f015 1a1ecf90b6590d963064b80dcc4ec4ff {"aliquot_tag": "ALQ_46f8fee3", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02616.RNA-Seq.transcriptome.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.transcriptome.gdc_realn.bam 10287986112 BAM transcriptome harmonized CPTAC3 2370031e-9743-497a-92a4-960008c90e76 0e0542116caecee50d543e524d6a865a {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.RNA-Seq.transcriptome.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.transcriptome.gdc_realn.bam 8810373220 BAM transcriptome harmonized CPTAC3 68754766-3722-4208-9577-21d5b5be128b 85ee03c4184a966b576d82c59f9aa89b {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor"} -C3L-02616.WGS.A C3L-02616 LUAD WGS tissue_normal CPT0192250006 CPT0192250006.WholeGenome.RP-1303.bam 60991733141 BAM aligned CPTAC3 12d0356a-84e9-466d-9a5d-5efbd4426a2e 41c3c7519700cfb9b17ad602ec979890 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.WGS.A.hg38 C3L-02616 LUAD WGS tissue_normal CPT0192250006 adc4dbaf-8bc8-4ac1-8fb7-08df357230ac_wgs_gdc_realn.bam 88428013936 BAM harmonized CPTAC3 b089301c-670f-45c7-9f97-459dd827a31b e5f35d2045bcb36a456902413befa162 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.WGS.N C3L-02616 LUAD WGS blood_normal CPT0192360002 CPT0192360002.WholeGenome.RP-1303.bam 54591548332 BAM aligned CPTAC3 7a57e165-b37d-4860-a36e-e44b0e967c4e 77168024548300379f5f32826837c705 {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02616.WGS.N.hg38 C3L-02616 LUAD WGS blood_normal CPT0192360002 d2a915e5-6de2-452f-a014-29804e731a73_wgs_gdc_realn.bam 78931863401 BAM harmonized CPTAC3 96412ed7-70aa-46db-8963-2b78a6a43b67 e095f0804af63e689b796868cea8b66d {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02616.WGS.T C3L-02616 LUAD WGS tumor CPT0192240006 CPT0192240006.WholeGenome.RP-1303.bam 70332323868 BAM aligned CPTAC3 ba898483-16cc-4851-b2e0-a79bd2c67c27 0cf2570212b96678a48de833c3da157e {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor"} -C3L-02616.WGS.T.hg38 C3L-02616 LUAD WGS tumor CPT0192240006 5168a152-2084-4c61-ab12-1602325fe82e_wgs_gdc_realn.bam 102564563633 BAM harmonized CPTAC3 8105969b-3a9c-4779-ac5f-ef9d22860c99 58c23e405fbcbb3a2d066ee722aa4a8c {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor"} -C3L-02616.WXS.A C3L-02616 LUAD WXS tissue_normal CPT0192250006 CPT0192250006.WholeExome.RP-1303.bam 24210881190 BAM aligned CPTAC3 4c8681c4-b57b-413a-9707-62ca2ba9cc68 d97c9ed3f1c7d95c79eceba403e10a00 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.WXS.A.hg38 C3L-02616 LUAD WXS tissue_normal CPT0192250006 adc4dbaf-8bc8-4ac1-8fb7-08df357230ac_wxs_gdc_realn.bam 33485388508 BAM harmonized CPTAC3 46fa98fb-f15b-43c2-838e-5763579aadab 4df058bfd213c1eefa7f3751b1d95813 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02616.WXS.N C3L-02616 LUAD WXS blood_normal CPT0192360002 CPT0192360002.WholeExome.RP-1303.bam 29193588974 BAM aligned CPTAC3 efcfe89f-05ea-4bd3-953f-631072cd9172 0462abb9bbd016cb415059449d35f4a6 {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02616.WXS.N.hg38 C3L-02616 LUAD WXS blood_normal CPT0192360002 d2a915e5-6de2-452f-a014-29804e731a73_wxs_gdc_realn.bam 39952620826 BAM harmonized CPTAC3 722af924-f5aa-4616-bb20-ab9ac54fca4e 18772626aa29fbcda3a96af30b8e9c95 {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal"} -C3L-02616.WXS.T C3L-02616 LUAD WXS tumor CPT0192240006 CPT0192240006.WholeExome.RP-1303.bam 22298548125 BAM aligned CPTAC3 c3c4d92e-8dab-4564-a3fa-5770024357bf ad229265ccd67d9696dc5ce22bb5a37f {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor"} -C3L-02616.WXS.T.hg38 C3L-02616 LUAD WXS tumor CPT0192240006 5168a152-2084-4c61-ab12-1602325fe82e_wxs_gdc_realn.bam 30673050729 BAM harmonized CPTAC3 c2bb57ca-10e0-4ce2-b232-c9089a6b75c0 cff5930fbf3a49e7fc7767c97d8c2892 {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor"} -C3L-02617.miRNA-Seq.A.hg38 C3L-02617 HNSCC miRNA-Seq tissue_normal CPT0229230009 f8f27eda-38a0-4ab1-ad8a-4c2d01cde5b0_mirnaseq_gdc_realn.bam 254080034 BAM harmonized CPTAC3 8dbad6c5-cbd5-4abc-86fc-1bf65e357179 fe6672a082eb5ec49e88986ef4cbe598 {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.miRNA-Seq.S14_L005_R1.A C3L-02617 HNSCC miRNA-Seq tissue_normal CPT0229230009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L005_R1_001.unaln.bam 224526015 BAM S14_L005_R1 unaligned CPTAC3 9b503fdc-dae7-4322-bc41-6e04b95ba99b aa0f966ae0edc0b6103fe5e2e0148941 {"aliquot_tag": "ALQ_9238569a", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.miRNA-Seq.S39_L004_R1.T C3L-02617 HNSCC miRNA-Seq tumor CPT0229210013 190228_UNC32-K00270_0151_AHYLY3BBXX_CTATAC_S39_L004_R1_001.unaln.bam 250526579 BAM S39_L004_R1 unaligned CPTAC3 15dd9fb0-1a2c-4052-810d-7f8b00e536d6 81cf79743189c865253c4396541211ea {"aliquot_tag": "ALQ_1136dda5", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02617.miRNA-Seq.T.hg38 C3L-02617 HNSCC miRNA-Seq tumor CPT0229210013 364af1f6-2f1e-4baf-8e1a-913f66e2317d_mirnaseq_gdc_realn.bam 278624000 BAM harmonized CPTAC3 0f83e4d1-4ab1-4b79-be70-426f5c20a2aa 63f1b66350ff515285e4d950f62c3c8b {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_a7d2e4ca.miRNA-Seq.S1_L003_R1.T C3L-02617 HNSCC miRNA-Seq tumor CPT0229190013 190813_UNC32-K00270_0196_AH5MCWBBXY_CTCAGA_S1_L003_R1_001.unaln.bam 194995967 BAM S1_L003_R1 unaligned CPTAC3 6985e64f-d826-43cb-bd39-04705ca07137 45331cebf8ed620f32d37f20b80ef117 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_a7d2e4ca.miRNA-Seq.T.hg38 C3L-02617 HNSCC miRNA-Seq tumor CPT0229190013 6f91627e-ca9e-47f5-a369-f58dd2dee548_mirnaseq_gdc_realn.bam 222873051 BAM harmonized CPTAC3 7a3000b0-259f-4c26-aa89-2a6e0b961b7f 3ea9f25736f12763fe3585ef08a9133e {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_a7d2e4ca.RNA-Seq.chimeric.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.chimeric.gdc_realn.bam 38800147 BAM chimeric harmonized CPTAC3 154616d0-8bc6-4da5-9fd7-03e5b58ab6f1 71a565ac08ee30d8de50a41269d2c800 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_a7d2e4ca.RNA-Seq.genomic.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.genomic.gdc_realn.bam 8359230444 BAM genomic harmonized CPTAC3 5bd926c6-b590-44ba-9c88-f087eabff7da fcd045f02df7a36bd5862a1dbfe43043 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_a7d2e4ca.RNA-Seq.S18_L005_R1.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R1_001.fastq.gz 3718849103 FASTQ S18_L005_R1 unaligned CPTAC3 512e18e5-4302-4930-b8c2-71a44520f21a 85faf4c07b1bc96a5f0a43edbfe423a7 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_a7d2e4ca.RNA-Seq.S18_L005_R2.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R2_001.fastq.gz 4080947936 FASTQ S18_L005_R2 unaligned CPTAC3 0dfc04ea-3414-43e6-8ab5-b956c15f5b74 983cb0098c28e2801b1c74f03ae9fe52 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_a7d2e4ca.RNA-Seq.transcriptome.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.transcriptome.gdc_realn.bam 8770149643 BAM transcriptome harmonized CPTAC3 1797fab1-ea51-4c2e-a2ed-97d4f78eeba5 7d19a1321a0a7648335712ad16cb86d6 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_cea32104.MethArray.Green.T C3L-02617 HNSCC Methylation_Array tumor CPT0229190006 203561620080_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6b149790-8fea-4d6f-893f-e3ccf62a8023 c79895fa3fa771b5caef4f0be5049386 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_cea32104.MethArray.Red.T C3L-02617 HNSCC Methylation_Array tumor CPT0229190006 203561620080_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 919a4eda-47e0-42e3-b458-a0937502a17f 84417d7d1ab09a1352e5e12e8fb40492 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_cea32104.WGS.T C3L-02617 HNSCC WGS tumor CPT0229190006 CPT0229190006.WholeGenome.RP-1303.bam 76422429885 BAM aligned CPTAC3 f4a7039d-7d60-447e-817b-928d0c7056ea 3b00e13ceb72e7c2f7464c4af3c9bbe4 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_cea32104.WGS.T.hg38 C3L-02617 HNSCC WGS tumor CPT0229190006 be017248-e1fd-45fd-b185-d0e102ada4e8_wgs_gdc_realn.bam 110729474179 BAM harmonized CPTAC3 90464380-6f65-439f-9566-28df2137ae7a 0fe1851bc21fd9847639252d5006e6a3 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_cea32104.WXS.T C3L-02617 HNSCC WXS tumor CPT0229190006 CPT0229190006.WholeExome.RP-1303.bam 23384774724 BAM aligned CPTAC3 e27459b4-e79e-4f9e-a6a1-76c46f45868f 8b527fa50e5b80ab62a47399effb4e7a {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.REP_cea32104.WXS.T.hg38 C3L-02617 HNSCC WXS tumor CPT0229190006 be017248-e1fd-45fd-b185-d0e102ada4e8_wxs_gdc_realn.bam 31873820322 BAM harmonized CPTAC3 8fc8a057-c842-4ff3-bf06-39b309a28350 7d95082bfb9ac955694b55a9c295efaa {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-02617.RNA-Seq.chimeric.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.chimeric.gdc_realn.bam 33311631 BAM chimeric harmonized CPTAC3 46648afd-9058-4040-bc17-5fffe0aa0097 140e2985417817f1a8a040f4d4b21ceb {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.RNA-Seq.chimeric.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.chimeric.gdc_realn.bam 219982249 BAM chimeric harmonized CPTAC3 578ab8ac-60ba-4594-8eda-24a0d1b41ea7 b0eff5465857b26a018e1cad1db7187f {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor"} -C3L-02617.RNA-Seq.genomic.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.genomic.gdc_realn.bam 9759263084 BAM genomic harmonized CPTAC3 d7084ba1-11c8-42bf-8720-b862eece3a2d b1d4b2705358b04ea78bd2cf3a22b9ef {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.RNA-Seq.genomic.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.genomic.gdc_realn.bam 8079187493 BAM genomic harmonized CPTAC3 58896a45-987a-4d44-9456-1a23e33ee8d8 1d51dddd90c65b830e04bcf18f975d0d {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor"} -C3L-02617.RNA-Seq.S1_L001_R1.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3774086677 FASTQ S1_L001_R1 unaligned CPTAC3 22f265ef-073e-4439-a182-721b1e73ae87 20857bfdc82634d4dff13daf5b027e94 {"aliquot_tag": "ALQ_1136dda5", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02617.RNA-Seq.S1_L001_R2.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 4195303625 FASTQ S1_L001_R2 unaligned CPTAC3 a6870dad-b2e8-4229-90dc-a984d0e301ac d69252db560ff05d31b0f62212f7118d {"aliquot_tag": "ALQ_1136dda5", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02617.RNA-Seq.S26_L006_R1.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R1_001.fastq.gz 4477762836 FASTQ S26_L006_R1 unaligned CPTAC3 30658b7a-8b8f-4c36-a0c7-1981c39b600c 077a8c5ebd1305a4b65046110437d976 {"aliquot_tag": "ALQ_9238569a", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.RNA-Seq.S26_L006_R2.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R2_001.fastq.gz 4982512000 FASTQ S26_L006_R2 unaligned CPTAC3 bb027e79-b3eb-4ff4-bdce-b8923531ff38 7f5a640e2d332c23b19d47a3cb81d562 {"aliquot_tag": "ALQ_9238569a", "sample": "S26", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.RNA-Seq.transcriptome.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.transcriptome.gdc_realn.bam 13533329345 BAM transcriptome harmonized CPTAC3 3cf66001-a89b-4f46-88c2-b3cb0b75bb34 d534486f63cb9e30b3a220a9c6f51c5c {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.RNA-Seq.transcriptome.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.transcriptome.gdc_realn.bam 9953138621 BAM transcriptome harmonized CPTAC3 49954782-2775-4f95-8f64-8505e29d6038 e98312d09e7ff91cfe01e7bf0aeb91a2 {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor"} -C3L-02617.WGS.N C3L-02617 HNSCC WGS blood_normal CPT0229330002 CPT0229330002.WholeGenome.RP-1303.bam 50029662993 BAM aligned CPTAC3 fada43cc-f22c-4626-8c7b-6de4b436c304 45fb182cf05bcc89a7f71b1b08d01030 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02617.WGS.N.hg38 C3L-02617 HNSCC WGS blood_normal CPT0229330002 f13bac4a-9644-49b5-b293-9a1c7bbc403f_wgs_gdc_realn.bam 75722880431 BAM harmonized CPTAC3 417dfe70-1bfe-4de0-930c-61ffe8b20253 e10be1a2c947ecb5083cd0df637b57c8 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02617.WXS.A C3L-02617 HNSCC WXS tissue_normal CPT0229230006 CPT0229230006.WholeExome.RP-1303.bam 46156720375 BAM aligned CPTAC3 b0093ea5-0716-4bcf-9758-d9851527e6f4 aa17079049b6249855452d69a28fa14c {"aliquot_tag": "ALQ_2874b0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.WXS.A.hg38 C3L-02617 HNSCC WXS tissue_normal CPT0229230006 7e68c738-9217-4634-a60c-6a6be4c42cf5_wxs_gdc_realn.bam 64621180276 BAM harmonized CPTAC3 6bbdbe79-7db3-4099-bb10-fc7ba272de70 6662e6acc7d060dcdafb8a19bebd1a7e {"aliquot_tag": "ALQ_2874b0b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02617.WXS.N C3L-02617 HNSCC WXS blood_normal CPT0229330002 CPT0229330002.WholeExome.RP-1303.bam 39358382853 BAM aligned CPTAC3 cc419156-538f-48fe-9873-86d271221c58 26569e883a51faee3d65552bde8e7892 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02617.WXS.N.hg38 C3L-02617 HNSCC WXS blood_normal CPT0229330002 f13bac4a-9644-49b5-b293-9a1c7bbc403f_wxs_gdc_realn.bam 54963054270 BAM harmonized CPTAC3 bd478f09-96b6-4479-87ad-2566ff4b5377 35a038c8491d82fb43810360f9bca771 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02617.WXS.T C3L-02617 HNSCC WXS tumor CPT0229210006 CPT0229210006.WholeExome.RP-1303.bam 27537830974 BAM aligned CPTAC3 0825e012-f875-4cb1-aeaa-6e7c1872e31a e1c57bded9878bc61749117b049114f4 {"aliquot_tag": "ALQ_7847186b", "gdc_sample_type": "Primary Tumor"} -C3L-02617.WXS.T.hg38 C3L-02617 HNSCC WXS tumor CPT0229210006 7108d886-a0a3-4788-89e9-012b85c92096_wxs_gdc_realn.bam 38089035477 BAM harmonized CPTAC3 eea4be0d-4175-4494-8ee4-da7073b51867 2899cd3643f944622613250864498ee5 {"aliquot_tag": "ALQ_7847186b", "gdc_sample_type": "Primary Tumor"} -C3L-02618.MethArray.Green.A C3L-02618 LSCC Methylation_Array tissue_normal CPT0241840006 204367490082_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 f99fe07c-5694-4137-aa6f-996a00aa1a4b f480d3901fa0bb2cc3fd4f71b916202f {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.MethArray.Green.T C3L-02618 LSCC Methylation_Array tumor CPT0241660006 204372030022_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 4c3d8378-b7f3-4c17-949f-10edf483332c 5daac775565654639bd1ce02c84d3c8b {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor"} -C3L-02618.MethArray.Red.A C3L-02618 LSCC Methylation_Array tissue_normal CPT0241840006 204367490082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 0e69ebb6-a9de-47d8-99bf-d76da96ae44d d013be9021b95722b18f08bfc386a95e {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.MethArray.Red.T C3L-02618 LSCC Methylation_Array tumor CPT0241660006 204372030022_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 f00089fa-0867-4399-9fe1-d41e7e2b60cc 438af9e864c143174754bc40891053a7 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor"} -C3L-02618.miRNA-Seq.A.hg38 C3L-02618 LSCC miRNA-Seq tissue_normal CPT0241840009 bea9f18f-eb91-41a1-87e6-fdc9cda99b8e_mirnaseq_gdc_realn.bam 168527219 BAM harmonized CPTAC3 3439362e-efa7-4105-85ab-0c2a782f7c66 f9cc392d5980a37ab7b65a8c6764cb76 {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.miRNA-Seq.S13_L005_R1.A C3L-02618 LSCC miRNA-Seq tissue_normal CPT0241840009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GATCAG_S13_L005_R1_001.unaln.bam 146722930 BAM S13_L005_R1 unaligned CPTAC3 cc34677b-355d-4b79-8862-6d0dff46e4fa ce8bbff6ae129331078f1c431e7b0d34 {"aliquot_tag": "ALQ_7403ee0c", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.miRNA-Seq.S38_L007_R1.T C3L-02618 LSCC miRNA-Seq tumor CPT0241660009 200224_UNC31-K00269_0267_AHC722BBXY_CTAGCT_S38_L007_R1_001.unaln.bam 267125377 BAM S38_L007_R1 unaligned CPTAC3 a45892c5-c497-4d0b-a9d3-80c8590b6e04 21677a60bd26136b0ada28ef5e066cb2 {"aliquot_tag": "ALQ_34c9dc1c", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02618.miRNA-Seq.T.hg38 C3L-02618 LSCC miRNA-Seq tumor CPT0241660009 12b4c961-3ae9-43b7-a87e-b9b1bf9bb429_mirnaseq_gdc_realn.bam 296426816 BAM harmonized CPTAC3 509a6ab3-0368-4d6f-a458-2bdb6536603a b04fac954bbc54dfc19a0b08570c4c93 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor"} -C3L-02618.RNA-Seq.chimeric.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.chimeric.gdc_realn.bam 37189276 BAM chimeric harmonized CPTAC3 d6538e66-faab-4872-9621-3dc3616a1e9b bcd003251088bb6ec738506b5aae39e8 {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.RNA-Seq.chimeric.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.chimeric.gdc_realn.bam 36874379 BAM chimeric harmonized CPTAC3 768424cf-e958-4a39-aa79-93ca10860758 f6452b76e981e962d3cbc4e291843c75 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor"} -C3L-02618.RNA-Seq.genomic.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.genomic.gdc_realn.bam 7501011014 BAM genomic harmonized CPTAC3 03cc730e-e60a-4e8a-a814-97c9cccacf3c 81096371d91c2fd8ce9e9f9ea4e2f24c {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.RNA-Seq.genomic.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.genomic.gdc_realn.bam 8257767855 BAM genomic harmonized CPTAC3 21ac0718-24fd-418c-9aef-ba520983c5c8 4ea2b2566ffad30f8e743a6dd0a9ead6 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor"} -C3L-02618.RNA-Seq.S6_L002_R1.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4081820593 FASTQ S6_L002_R1 unaligned CPTAC3 1df6b341-bdaf-4768-b1e7-356a5f6fa66c ea22565c1c3ce1feaf58f2249cbaca08 {"aliquot_tag": "ALQ_34c9dc1c", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02618.RNA-Seq.S6_L002_R2.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4336151531 FASTQ S6_L002_R2 unaligned CPTAC3 eb266e50-5c8a-4e65-aa08-f9c037a45f46 143f46f938ee5f33f9e183ca5d125ed2 {"aliquot_tag": "ALQ_34c9dc1c", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02618.RNA-Seq.S9_L007_R1.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R1_001.fastq.gz 3674769212 FASTQ S9_L007_R1 unaligned CPTAC3 3167e6d4-db7d-44b7-9a34-1a6c8480ca9e 6bf7ce8238c679e856bd43995ab1b397 {"aliquot_tag": "ALQ_7403ee0c", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.RNA-Seq.S9_L007_R2.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R2_001.fastq.gz 3989295347 FASTQ S9_L007_R2 unaligned CPTAC3 f0a9938b-4a76-49d7-a438-5c5fbb275fa6 80e10812629391d8708319781fae1bd9 {"aliquot_tag": "ALQ_7403ee0c", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.RNA-Seq.transcriptome.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.transcriptome.gdc_realn.bam 9011496153 BAM transcriptome harmonized CPTAC3 a32af426-ff3d-4a36-babc-a62bba3b1450 43ed23b20f000eafa5c2677625c85b1f {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.RNA-Seq.transcriptome.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.transcriptome.gdc_realn.bam 10664110375 BAM transcriptome harmonized CPTAC3 3b0572da-d06a-4ff8-9a8e-8f52fd51fcc3 6e7cadaf0c4b16feda6bbc03d96d6bd6 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor"} -C3L-02618.WGS.N C3L-02618 LSCC WGS blood_normal CPT0241930002 CPT0241930002.WholeGenome.RP-2158.bam 19495973747 BAM aligned CPTAC3 292bb6a2-6ac0-43d0-bf8a-9be498895b45 19488fee154b63e55b0005dd323f181e {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal"} -C3L-02618.WGS.N.hg38 C3L-02618 LSCC WGS blood_normal CPT0241930002 0ef644e0-864e-46a0-8539-b5c476cb0739_wgs_gdc_realn.bam 57729873603 BAM harmonized CPTAC3 f47749cb-0565-4d5f-913e-45ed04aa8ff5 9b7ae4df3378745cde142e1b3fc04290 {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal"} -C3L-02618.WGS.T C3L-02618 LSCC WGS tumor CPT0241660006 CPT0241660006.WholeGenome.RP-2158.bam 22137845556 BAM aligned CPTAC3 9fdb93bd-25a9-476b-983c-b4db9e850577 896a6d10eeb858e0e3682052896b00ac {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor"} -C3L-02618.WGS.T.hg38 C3L-02618 LSCC WGS tumor CPT0241660006 b233ed86-5554-4dcc-af8e-51fab4b8befa_wgs_gdc_realn.bam 66785654607 BAM harmonized CPTAC3 2f09606d-6c27-4c48-9f90-c8b4987fdb3f 4297abf36ecf62ea6d90bcb1f318de84 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor"} -C3L-02618.WXS.A C3L-02618 LSCC WXS tissue_normal CPT0241840006 CPT0241840006.WholeExome.RP-1303.bam 22249399235 BAM aligned CPTAC3 2d8928c7-2ecb-46a4-9c0d-c8ab9e4d271f df706bf7e011a5f8b0a52d6e8754b245 {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.WXS.A.hg38 C3L-02618 LSCC WXS tissue_normal CPT0241840006 5a727c99-0cda-4dcc-b78e-47395c1b1c3a_wxs_gdc_realn.bam 31107980679 BAM harmonized CPTAC3 2248c95e-7424-4bab-b0cb-63c98f4285f8 a615d0b7deb5fb359149f1ad7b6e2f44 {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02618.WXS.N C3L-02618 LSCC WXS blood_normal CPT0241930002 CPT0241930002.WholeExome.RP-1303.bam 22789677761 BAM aligned CPTAC3 e98929a7-f5aa-46d3-8fac-64727655594c c81cf922bdc4a9bd108b31dfb57352af {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal"} -C3L-02618.WXS.N.hg38 C3L-02618 LSCC WXS blood_normal CPT0241930002 0ef644e0-864e-46a0-8539-b5c476cb0739_wxs_gdc_realn.bam 30815339085 BAM harmonized CPTAC3 8736b131-4ea0-4f0a-ac31-059722feabab bd35539497cf02ab4f345f002e8e02bc {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal"} -C3L-02618.WXS.T C3L-02618 LSCC WXS tumor CPT0241660006 CPT0241660006.WholeExome.RP-1303.bam 19580821549 BAM aligned CPTAC3 f16ddfe5-ad2a-4866-8070-e5db53d6d11c dbfba0259b8636091a4abeed2b8e38c7 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor"} -C3L-02618.WXS.T.hg38 C3L-02618 LSCC WXS tumor CPT0241660006 b233ed86-5554-4dcc-af8e-51fab4b8befa_wxs_gdc_realn.bam 26774700322 BAM harmonized CPTAC3 2af34c4e-c474-4c28-8f99-50a780d03f1b 9a588892d18b0dad1853c6f549cb8aa7 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor"} -C3L-02619.MethArray.Green.A C3L-02619 LSCC Methylation_Array tissue_normal CPT0191930009 203219650156_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3618518d-c1bf-4771-988e-7274b5413844 6fd26dd58234c14fa64ee397b86f357e {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.MethArray.Green.T C3L-02619 LSCC Methylation_Array tumor CPT0191860006 203220070100_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fad90639-dbd9-4831-b0fd-fc84abfb912e 7c99fdd5099f079c422fe116c32b6aba {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor"} -C3L-02619.MethArray.Red.A C3L-02619 LSCC Methylation_Array tissue_normal CPT0191930009 203219650156_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 cd657435-2ebd-4976-a94c-de5491ceb4a4 e0aefbf304db38bac4de968ebb4da14f {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.MethArray.Red.T C3L-02619 LSCC Methylation_Array tumor CPT0191860006 203220070100_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e0b83714-8c39-4d0a-bb16-0c333f8f26ce 9a9b5e38c3715a599807bfa8919d9346 {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor"} -C3L-02619.miRNA-Seq.A.hg38 C3L-02619 LSCC miRNA-Seq tissue_normal CPT0191930006 94d601ca-c75e-4136-8c94-f59291e859e3_mirnaseq_gdc_realn.bam 197733691 BAM harmonized CPTAC3 e5b383f0-1600-46ca-8a8f-baf10113a1ed 79d2c27b985e5879e54057e6513c57e3 {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.miRNA-Seq.S39_L004_R1.T C3L-02619 LSCC miRNA-Seq tumor CPT0191860009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTCAGA_S39_L004_R1_001.unaln.bam 180587935 BAM S39_L004_R1 unaligned CPTAC3 568d1b08-efbb-41af-b515-a101de9acbee fb1350929aecc8e682af65a688f397a2 {"aliquot_tag": "ALQ_ac4b9478", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02619.miRNA-Seq.S44_L004_R1.A C3L-02619 LSCC miRNA-Seq tissue_normal CPT0191930006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCATTC_S44_L004_R1_001.unaln.bam 176882188 BAM S44_L004_R1 unaligned CPTAC3 a61ca2e8-4a54-4629-8be5-9377b6993e61 117c9b0073e0150cba3d46525f34c153 {"aliquot_tag": "ALQ_3f48d53c", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.miRNA-Seq.T.hg38 C3L-02619 LSCC miRNA-Seq tumor CPT0191860009 bb58e994-28e1-4e7b-8235-b182e2c1d36e_mirnaseq_gdc_realn.bam 211722589 BAM harmonized CPTAC3 a427518a-3b6d-4621-8bd2-24b590c33d9f 98acb01c0718e518a6fb63691ceacbe3 {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor"} -C3L-02619.RNA-Seq.chimeric.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.chimeric.gdc_realn.bam 116167945 BAM chimeric harmonized CPTAC3 c08136ac-4eaf-415a-9974-16bcef52a1b1 7aa2de73464556ccd58cd7a3245f7068 {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.RNA-Seq.chimeric.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.chimeric.gdc_realn.bam 140087339 BAM chimeric harmonized CPTAC3 33d89ca2-e8df-4440-9eb9-3dd80e8a6d26 bc3d9817ab812188b846ba8f17bd23db {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor"} -C3L-02619.RNA-Seq.genomic.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.genomic.gdc_realn.bam 7065561886 BAM genomic harmonized CPTAC3 329c7c26-1c39-4051-ac5b-5407799678d1 7a135a952c14029e1c629d16251ef413 {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.RNA-Seq.genomic.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.genomic.gdc_realn.bam 6543497540 BAM genomic harmonized CPTAC3 898ce4a1-8c64-4c19-ae12-a6bf5bdedf19 94fd577a89a97dd2e2973f9ddc5893c1 {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor"} -C3L-02619.RNA-Seq.S12_L003_R1.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R1_001.fastq.gz 2810625853 FASTQ S12_L003_R1 unaligned CPTAC3 fa0b3288-254d-4ddf-be1d-30a9f308e479 b34de35ee693a5a461c667d147bd5d82 {"aliquot_tag": "ALQ_ac4b9478", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02619.RNA-Seq.S12_L003_R2.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R2_001.fastq.gz 2845096890 FASTQ S12_L003_R2 unaligned CPTAC3 33870c11-875d-4612-b2f5-6fca70a78a51 cb4b6629ec6eb01bd817bf7d879cc454 {"aliquot_tag": "ALQ_ac4b9478", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02619.RNA-Seq.S19_L005_R1.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R1_001.fastq.gz 2942247998 FASTQ S19_L005_R1 unaligned CPTAC3 0bfdc730-4c3b-4e4b-8955-54e22c896cda 5de23d9161a1738a0aff2b319920dfd2 {"aliquot_tag": "ALQ_3f48d53c", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.RNA-Seq.S19_L005_R2.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3194630772 FASTQ S19_L005_R2 unaligned CPTAC3 a5b1ad06-1419-43a9-91de-b5ca9d912edb 1f9cd0b1ef0f5daa7f6bc90283d46487 {"aliquot_tag": "ALQ_3f48d53c", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.RNA-Seq.transcriptome.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.transcriptome.gdc_realn.bam 8108245710 BAM transcriptome harmonized CPTAC3 4d985b25-1f04-495c-8428-d2c16d47c9a5 07a21a49d571eb29527b41d4f74e55de {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.RNA-Seq.transcriptome.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.transcriptome.gdc_realn.bam 7107702675 BAM transcriptome harmonized CPTAC3 be64ef6a-d1cc-4eab-9311-f0bb7fa73475 7fbb1dc1b4024f1ba651ae2faa509176 {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor"} -C3L-02619.WGS.A C3L-02619 LSCC WGS tissue_normal CPT0191930009 CPT0191930009.WholeGenome.RP-1303.bam 64529357779 BAM aligned CPTAC3 ac1220e5-9ecf-40df-9693-4b93994dbb21 bd6a52ee2bfbd284f38dbe3645882d88 {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.WGS.A.hg38 C3L-02619 LSCC WGS tissue_normal CPT0191930009 86a146cb-c16b-4d97-8b77-e5e9dfb1ed6d_wgs_gdc_realn.bam 93167766642 BAM harmonized CPTAC3 2f9b5e4a-831c-4b01-8ed7-af9df0f60657 8894068caf2c9fec4c8a12eeea048f4f {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.WGS.N C3L-02619 LSCC WGS blood_normal CPT0192020002 CPT0192020002.WholeGenome.RP-1303.bam 54766919303 BAM aligned CPTAC3 8a1621a2-d2b4-4e87-8727-22e722535a83 020247e703e6d229ba3bf444eb42161b {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02619.WGS.N.hg38 C3L-02619 LSCC WGS blood_normal CPT0192020002 b7a3d3c7-0b0d-4244-881b-333f1c1e38e9_wgs_gdc_realn.bam 77954383541 BAM harmonized CPTAC3 52912028-5b24-424a-9690-188bd3bf7b1b 523cf48a846895c16746232e6257e3d3 {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02619.WGS.T C3L-02619 LSCC WGS tumor CPT0191860006 CPT0191860006.WholeGenome.RP-1303.bam 65132432150 BAM aligned CPTAC3 52d1e307-52ba-4219-9294-7ac340e3b187 44601d6d7c5ff09142738421c4a81d1a {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor"} -C3L-02619.WGS.T.hg38 C3L-02619 LSCC WGS tumor CPT0191860006 f693b499-5f81-4c9a-a653-c2f989293a5f_wgs_gdc_realn.bam 92205286209 BAM harmonized CPTAC3 0698f59a-d0cf-4362-9398-f40c9403ef1a 68a58a51f6728f7a04c4047c06ac40cb {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor"} -C3L-02619.WXS.A C3L-02619 LSCC WXS tissue_normal CPT0191930009 CPT0191930009.WholeExome.RP-1303.bam 27733925768 BAM aligned CPTAC3 4c41a036-661f-45a5-ac74-b2479b9e59d1 209175cc5fe43d4ea28656e20f008f21 {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.WXS.A.hg38 C3L-02619 LSCC WXS tissue_normal CPT0191930009 86a146cb-c16b-4d97-8b77-e5e9dfb1ed6d_wxs_gdc_realn.bam 37787418555 BAM harmonized CPTAC3 be796e17-9b03-4333-980c-50b083b64266 8dbcbcb5cf0db8b65149fb89c9fb3f77 {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02619.WXS.N C3L-02619 LSCC WXS blood_normal CPT0192020002 CPT0192020002.WholeExome.RP-1303.bam 28608284794 BAM aligned CPTAC3 5e398eb2-fe66-4280-afbd-a886fcd31c16 2ab73e423783fb63916cba3153dfa119 {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02619.WXS.N.hg38 C3L-02619 LSCC WXS blood_normal CPT0192020002 b7a3d3c7-0b0d-4244-881b-333f1c1e38e9_wxs_gdc_realn.bam 39062911134 BAM harmonized CPTAC3 34a67dfe-a2d6-474f-a7e9-3c29d9dae9f8 19cba090c399e4f7fa441fde88798e47 {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02619.WXS.T C3L-02619 LSCC WXS tumor CPT0191860006 CPT0191860006.WholeExome.RP-1303.bam 30127921789 BAM aligned CPTAC3 c773f1d6-ef7a-4300-9c95-55837092b64d 4b3e7a2eb5f8395b9ca6de78e3c58b80 {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor"} -C3L-02619.WXS.T.hg38 C3L-02619 LSCC WXS tumor CPT0191860006 f693b499-5f81-4c9a-a653-c2f989293a5f_wxs_gdc_realn.bam 41733564115 BAM harmonized CPTAC3 5381b2f8-b689-49d4-a760-407462e0ba6e e230293149aef982fb6a0241796f7646 {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor"} -C3L-02621.MethArray.Green.A C3L-02621 HNSCC Methylation_Array tissue_normal CPT0201860007 203220070154_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 58c2a7be-31e4-4017-924c-cd8002a87cfb 1d52da004b7d7df238a50a4be3b0cce5 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.MethArray.Green.T C3L-02621 HNSCC Methylation_Array tumor CPT0201830007 203271740119_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 656d2f76-ba87-4209-959d-4fc30f1b33fd 6c7a3aab23aa9466edefb5db37b1e8d7 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor"} -C3L-02621.MethArray.Red.A C3L-02621 HNSCC Methylation_Array tissue_normal CPT0201860007 203220070154_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 e9e39801-f561-49e5-8fd3-80d0ca77d893 bb34a9c5ef189149ed356ceecb94d682 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.MethArray.Red.T C3L-02621 HNSCC Methylation_Array tumor CPT0201830007 203271740119_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 7392ca4c-95fc-43a5-9478-647a3fc79d67 fa688b56e5a7c1e3a84c7d7822bb3ba8 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor"} -C3L-02621.miRNA-Seq.A.hg38 C3L-02621 HNSCC miRNA-Seq tissue_normal CPT0201860010 01e05f87-512c-4e86-8eda-3459285f56da_mirnaseq_gdc_realn.bam 294444646 BAM harmonized CPTAC3 067867f6-4320-444a-9f57-ac8ca134f2cb f620aa563ae7a15b5f280750c70ef337 {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.miRNA-Seq.S12_L003_R1.T C3L-02621 HNSCC miRNA-Seq tumor CPT0201830010 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L003_R1_001.unaln.bam 224697784 BAM S12_L003_R1 unaligned CPTAC3 00f852f5-dc3a-4bbf-81a1-8ee39f66470f 480492d57eec178c91107a4bf0accd7e {"aliquot_tag": "ALQ_22aeb503", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02621.miRNA-Seq.S30_L004_R1.A C3L-02621 HNSCC miRNA-Seq tissue_normal CPT0201860010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L004_R1_001.unaln.bam 263060385 BAM S30_L004_R1 unaligned CPTAC3 6ac47d00-cce8-418f-a3b5-4e3afb810a68 2e28798dd1ce97d755a4ddf555296d79 {"aliquot_tag": "ALQ_ea4e3a73", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.miRNA-Seq.T.hg38 C3L-02621 HNSCC miRNA-Seq tumor CPT0201830010 3224352a-95c0-4e53-9a9b-b10746f65d01_mirnaseq_gdc_realn.bam 254574045 BAM harmonized CPTAC3 b1d26dbe-810b-46d4-885a-9b142b831d5a f8e4963b8725c5476172078ff6ebeff1 {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor"} -C3L-02621.RNA-Seq.chimeric.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.chimeric.gdc_realn.bam 191015837 BAM chimeric harmonized CPTAC3 5e5f5e62-b277-447e-aa94-76800dd6e2ff f1337dc3e8980ae110a4c307f1266529 {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.RNA-Seq.chimeric.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.chimeric.gdc_realn.bam 223119811 BAM chimeric harmonized CPTAC3 8c4c9b95-8ea6-4475-b17f-7e448bbe17b4 1bc73bb06cced2e20c70c437fcadcb6b {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor"} -C3L-02621.RNA-Seq.genomic.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.genomic.gdc_realn.bam 8771265755 BAM genomic harmonized CPTAC3 ceb83175-2d65-4cf2-a1f5-e0d091ad847b 416b8242c97e095a2bc229d64f2dc20a {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.RNA-Seq.genomic.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.genomic.gdc_realn.bam 8480345286 BAM genomic harmonized CPTAC3 92ecca8f-a704-4256-b914-752d1723a99f a4f25f3d055c1298f6a6aa73c08cb772 {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor"} -C3L-02621.RNA-Seq.S11_L003_R1.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4107023882 FASTQ S11_L003_R1 unaligned CPTAC3 265d9f67-617f-483e-a9bd-4e57ca8233e7 34bec79a1b86b735f0e18c423aebfcdf {"aliquot_tag": "ALQ_ea4e3a73", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.RNA-Seq.S11_L003_R2.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4628961023 FASTQ S11_L003_R2 unaligned CPTAC3 f9ffd56c-75e7-423e-b828-970d1925f002 853b2e3d504868f78795c5c5bba71e41 {"aliquot_tag": "ALQ_ea4e3a73", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.RNA-Seq.S3_L007_R1.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R1_001.fastq.gz 3836825814 FASTQ S3_L007_R1 unaligned CPTAC3 a7fffb0e-420f-4b9e-913c-734eb8094125 8792d0997f4e651d5d6950025caaba77 {"aliquot_tag": "ALQ_22aeb503", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02621.RNA-Seq.S3_L007_R2.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R2_001.fastq.gz 4247918531 FASTQ S3_L007_R2 unaligned CPTAC3 db274a48-4275-4af0-a114-841f96437811 b64a6692e9c31b5f0f52dd8867f97b5e {"aliquot_tag": "ALQ_22aeb503", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02621.RNA-Seq.transcriptome.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.transcriptome.gdc_realn.bam 12236059586 BAM transcriptome harmonized CPTAC3 c9871b6d-fb07-46b3-80e9-bb6183e103c2 c3bc55f337051562e910b489add8b404 {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.RNA-Seq.transcriptome.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.transcriptome.gdc_realn.bam 10049164726 BAM transcriptome harmonized CPTAC3 2f2382fa-739b-467b-9fd9-d6c3887419fb aa7e1ad2b6ae33a69881b18427e2f4d8 {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor"} -C3L-02621.WGS.N C3L-02621 HNSCC WGS blood_normal CPT0201970002 CPT0201970002.WholeGenome.RP-1303.bam 58733948249 BAM aligned CPTAC3 79b2d397-3845-47ee-8cda-14459d014f69 29125d5ce08358237b444703a4cf4a60 {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02621.WGS.N.hg38 C3L-02621 HNSCC WGS blood_normal CPT0201970002 02f60b7f-627c-467f-82d6-b766f213c238_wgs_gdc_realn.bam 85697597279 BAM harmonized CPTAC3 20eae819-83fd-4ade-9bb9-ae11912f675b 5c4c361ed8fcd8810779a3e4355a98f8 {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02621.WGS.T C3L-02621 HNSCC WGS tumor CPT0201830007 CPT0201830007.WholeGenome.RP-1303.bam 75604319349 BAM aligned CPTAC3 fb6ecb3e-06e4-484e-a96c-7acd17c1669f 4f66cac17062d2d3c585bc244f540375 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor"} -C3L-02621.WGS.T.hg38 C3L-02621 HNSCC WGS tumor CPT0201830007 4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wgs_gdc_realn.bam 112311513475 BAM harmonized CPTAC3 f5e5f962-cd15-424f-bed2-496c59837503 4864b6ead4b6252522f2aba174899479 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor"} -C3L-02621.WXS.A C3L-02621 HNSCC WXS tissue_normal CPT0201860007 CPT0201860007.WholeExome.RP-1303.bam 21064254446 BAM aligned CPTAC3 75cccd1d-c31d-4c71-82d3-9a495700a3a3 03ed56590cb14d88a6cc9e898bc8f550 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.WXS.A.hg38 C3L-02621 HNSCC WXS tissue_normal CPT0201860007 cc7201d2-d4e1-416e-908c-767a7b6c1a8c_wxs_gdc_realn.bam 29197183904 BAM harmonized CPTAC3 18c849aa-ab12-4706-9ca9-71eae8f5e921 8b620e1026fb3259e99877d1631caea4 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02621.WXS.N C3L-02621 HNSCC WXS blood_normal CPT0201970002 CPT0201970002.WholeExome.RP-1303.bam 27468570258 BAM aligned CPTAC3 da6f7e59-955c-44e2-97a6-f5ff069940f1 1fbc82034f9e7011377836c1d3fec5f4 {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02621.WXS.N.hg38 C3L-02621 HNSCC WXS blood_normal CPT0201970002 02f60b7f-627c-467f-82d6-b766f213c238_wxs_gdc_realn.bam 39020161451 BAM harmonized CPTAC3 fd50b411-9585-42dc-adbb-a6dcaed253ad 050923e3eded89b5c26a0a3c0984093a {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02621.WXS.T C3L-02621 HNSCC WXS tumor CPT0201830007 CPT0201830007.WholeExome.RP-1303.bam 24957617938 BAM aligned CPTAC3 9e30c2a0-7698-42e7-9dcc-da1f0bcccef3 d53a7b6472641aff9f4c096376ec9d71 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor"} -C3L-02621.WXS.T.hg38 C3L-02621 HNSCC WXS tumor CPT0201830007 4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wxs_gdc_realn.bam 34462296906 BAM harmonized CPTAC3 cdabe1b1-bec3-4fc9-9d68-adb41cf03a19 abfc7d8396ae1caabbb71edb962b3023 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor"} -C3L-02624.MethArray.Green.A C3L-02624 LSCC Methylation_Array tissue_normal CPT0227070006 203219670117_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d70d0285-26a9-4267-b68d-b1ad8edd7a6e a7253c9e661061dec9ba08cbe08d6a14 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.MethArray.Green.T C3L-02624 LSCC Methylation_Array tumor CPT0227020006 203219670106_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 81f1f759-5301-479d-bcfe-56722228c718 1dce7b4195732e54989e0d6f20f95d8d {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor"} -C3L-02624.MethArray.Red.A C3L-02624 LSCC Methylation_Array tissue_normal CPT0227070006 203219670117_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 cc38e3ac-6db8-4c33-93db-3ee6123cc8db 97afcd65f3e933e93a8dc4f4c4d151e9 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.MethArray.Red.T C3L-02624 LSCC Methylation_Array tumor CPT0227020006 203219670106_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 536e41d6-ea46-41dd-a000-2d54bf508ca5 92bcc6d3790e319a21dd64623ae25615 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor"} -C3L-02624.miRNA-Seq.A.hg38 C3L-02624 LSCC miRNA-Seq tissue_normal CPT0227070009 9deafcf7-fff8-453a-a20c-94cb9d3eace4_mirnaseq_gdc_realn.bam 229880978 BAM harmonized CPTAC3 e87289df-9eca-4e72-bce2-9a5e1e708397 37252e8cb7ca523bc45f020c3b2cb602 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.miRNA-Seq.S32_L002_R1.T C3L-02624 LSCC miRNA-Seq tumor CPT0227020009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTAGAG_S32_L002_R1_001.unaln.bam 201368151 BAM S32_L002_R1 unaligned CPTAC3 82666cc9-57b1-4460-bf7c-e1392791cd96 da6131ba86503f218e9ab55dde3a139f {"aliquot_tag": "ALQ_b2afa57c", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02624.miRNA-Seq.S7_L005_R1.A C3L-02624 LSCC miRNA-Seq tissue_normal CPT0227070009 190206_UNC31-K00269_0191_AH2WY5BBXY_TATAAT_S7_L005_R1_001.unaln.bam 211404822 BAM S7_L005_R1 unaligned CPTAC3 bebd9f63-587d-42f7-af05-ca2ba2ed0cea aa85a9bdb9a9ba9856c6f82e78756b92 {"aliquot_tag": "ALQ_7a4f2a0c", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.miRNA-Seq.T.hg38 C3L-02624 LSCC miRNA-Seq tumor CPT0227020009 23d933cd-8c1d-420d-9373-0669304211f4_mirnaseq_gdc_realn.bam 217105926 BAM harmonized CPTAC3 1dc1335d-8a59-4500-a068-6bded8042487 8b43737a3ef9fcabff71a823df0ef374 {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor"} -C3L-02624.RNA-Seq.chimeric.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.chimeric.gdc_realn.bam 76539259 BAM chimeric harmonized CPTAC3 62fb88e4-9747-4931-b8a7-56744af19335 adcfaec0d82054669d0e1da061aae2c5 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.RNA-Seq.chimeric.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.chimeric.gdc_realn.bam 65714072 BAM chimeric harmonized CPTAC3 2e613a35-2b4e-4623-a692-815ef7db9525 12f24fc2085ceb413106875427fb3e6e {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor"} -C3L-02624.RNA-Seq.genomic.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.genomic.gdc_realn.bam 6278786146 BAM genomic harmonized CPTAC3 c32e8173-f976-4b60-904a-b1f8e7488475 f43bef57b2fcd16de5463f6bb74e1a59 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.RNA-Seq.genomic.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.genomic.gdc_realn.bam 8669049446 BAM genomic harmonized CPTAC3 2b10ddff-aba4-40a5-926d-5d9cb9035041 4c9a7236cb86835a78c6e9d4c7638a48 {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor"} -C3L-02624.RNA-Seq.S3_L001_R1.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3910054887 FASTQ S3_L001_R1 unaligned CPTAC3 5cd74265-d7d3-44d6-a11b-5c2d32232388 f16b0258f0db247d58b1d53dab92183c {"aliquot_tag": "ALQ_b2afa57c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02624.RNA-Seq.S3_L001_R2.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4444601774 FASTQ S3_L001_R2 unaligned CPTAC3 e1a3f69b-ee57-4a0e-8bfb-eef41f0df37c 6d4b0456b0b98d4299df7e387aaeea8b {"aliquot_tag": "ALQ_b2afa57c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02624.RNA-Seq.S9_L003_R1.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R1_001.fastq.gz 2898097253 FASTQ S9_L003_R1 unaligned CPTAC3 68af9350-beb8-4fcb-909a-f6fa91c82d3e 38ad27c2fae4597d8a6c7ebfd441c6c2 {"aliquot_tag": "ALQ_7a4f2a0c", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.RNA-Seq.S9_L003_R2.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R2_001.fastq.gz 3233478006 FASTQ S9_L003_R2 unaligned CPTAC3 e5c0fe70-a7f2-4296-9251-f2cce119cdc2 b0e5db38a81d1fcac4b094529a33f58b {"aliquot_tag": "ALQ_7a4f2a0c", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.RNA-Seq.transcriptome.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.transcriptome.gdc_realn.bam 7242031696 BAM transcriptome harmonized CPTAC3 1d7e8411-3c83-4b7b-a94c-fd2ec293d523 ccb7e023402e386e3144c6b9e2f67596 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.RNA-Seq.transcriptome.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.transcriptome.gdc_realn.bam 7943021158 BAM transcriptome harmonized CPTAC3 7edd98e1-b1d6-4da9-a102-ad56db831f30 e54ddcb57b03a8e133c43d02030c1ffb {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor"} -C3L-02624.WGS.A C3L-02624 LSCC WGS tissue_normal CPT0227070006 CPT0227070006.WholeGenome.RP-1303.bam 58761381541 BAM aligned CPTAC3 e1fbb5cf-e789-4962-bd0f-0f969bbeb09a 4f311f15247d379ed37e5da2f0863de0 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.WGS.A.hg38 C3L-02624 LSCC WGS tissue_normal CPT0227070006 2f3c18a4-fdda-4b95-95e3-cca183fc73e1_wgs_gdc_realn.bam 85786854562 BAM harmonized CPTAC3 23f67a4c-6297-4d64-8e55-0646b33d7a2c 6c13203c23b978bdab563ca41821dc7c {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.WGS.N C3L-02624 LSCC WGS blood_normal CPT0227170002 CPT0227170002.WholeGenome.RP-1303.bam 64864111588 BAM aligned CPTAC3 88722b84-b0f4-4eee-9eda-bbd064ebb549 7980a8428a99eadb8840bca012f26cb0 {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal"} -C3L-02624.WGS.N.hg38 C3L-02624 LSCC WGS blood_normal CPT0227170002 1f4a1020-576e-49f9-a1f9-4fe5c87941b7_wgs_gdc_realn.bam 93093483277 BAM harmonized CPTAC3 69daca40-9f0f-43bd-bfef-9d49b9ec7055 9592774725c119f8dae6289fe420c669 {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal"} -C3L-02624.WGS.T C3L-02624 LSCC WGS tumor CPT0227020006 CPT0227020006.WholeGenome.RP-1303.bam 65028569882 BAM aligned CPTAC3 ef61807a-ae6a-4d61-89f4-08fd8cd84394 6427b67ed5db9533a4062a5710f0da56 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor"} -C3L-02624.WGS.T.hg38 C3L-02624 LSCC WGS tumor CPT0227020006 7a444a8f-b557-47ba-bfdb-241bfb165c82_wgs_gdc_realn.bam 93973548993 BAM harmonized CPTAC3 04034030-8eac-44c6-b0e1-f9e477c978c5 208c9f46d0a58e8ee35bc652ef8fb623 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor"} -C3L-02624.WXS.A C3L-02624 LSCC WXS tissue_normal CPT0227070006 CPT0227070006.WholeExome.RP-1303.bam 17229181077 BAM aligned CPTAC3 8fe2ecac-68c5-4db1-ab7d-954863a10190 b5f042c4ece20dd70f4ca53ee908deb9 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.WXS.A.hg38 C3L-02624 LSCC WXS tissue_normal CPT0227070006 2f3c18a4-fdda-4b95-95e3-cca183fc73e1_wxs_gdc_realn.bam 24620258414 BAM harmonized CPTAC3 1fe52f8c-b1c1-4eb9-b0a8-3ec9993cc56e 04f71c4023d1c58e51fa841e4cab984b {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02624.WXS.N C3L-02624 LSCC WXS blood_normal CPT0227170002 CPT0227170002.WholeExome.RP-1303.bam 20636903558 BAM aligned CPTAC3 82790494-ff22-45e9-b1c5-53423c989575 d5bbf8280a76bd12691fa366c5035524 {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal"} -C3L-02624.WXS.N.hg38 C3L-02624 LSCC WXS blood_normal CPT0227170002 1f4a1020-576e-49f9-a1f9-4fe5c87941b7_wxs_gdc_realn.bam 28011162155 BAM harmonized CPTAC3 48d7558e-19fa-4c43-b7a9-9856b66a9a8a 4d86ca4c6f0de40993b36aabef517ada {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal"} -C3L-02624.WXS.T C3L-02624 LSCC WXS tumor CPT0227020006 CPT0227020006.WholeExome.RP-1303.bam 18506989694 BAM aligned CPTAC3 af2bf1d5-dbcf-499e-b227-b5ad6db5fd55 43cd497230a77ec9011026ec1ac12983 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor"} -C3L-02624.WXS.T.hg38 C3L-02624 LSCC WXS tumor CPT0227020006 7a444a8f-b557-47ba-bfdb-241bfb165c82_wxs_gdc_realn.bam 26181998581 BAM harmonized CPTAC3 df87b19b-a336-4b6b-985e-d9446044870d 051a9fa7294adf1ce94a611b85b770d1 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor"} -C3L-02625.MethArray.Green.A C3L-02625 LSCC Methylation_Array tissue_normal CPT0191750009 203219650174_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 feb49a98-4c0a-4b41-a9cf-50f5c6d18d5e 3647d1d52f22de95836191308190ad1b {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.MethArray.Green.T C3L-02625 LSCC Methylation_Array tumor CPT0191710006 203219650157_R05C01_Grn.idat 13676220 IDAT Green NA CPTAC3 591f1110-e909-4a45-b5a5-7494e4d4be72 f7438e228b752411766ae94c4d6ad451 {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor"} -C3L-02625.MethArray.Red.A C3L-02625 LSCC Methylation_Array tissue_normal CPT0191750009 203219650174_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 2135079d-2fcf-4aee-ac7e-5630d97ee6be 77fe5f2db121930b1d60475afebf9d88 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.MethArray.Red.T C3L-02625 LSCC Methylation_Array tumor CPT0191710006 203219650157_R05C01_Red.idat 13676220 IDAT Red NA CPTAC3 664b03f3-55a2-4432-a470-04f6dafd1828 1087e7ebaa6bfc77826bfeb62227cc1b {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor"} -C3L-02625.miRNA-Seq.A.hg38 C3L-02625 LSCC miRNA-Seq tissue_normal CPT0191750006 7b36adfd-9a7f-4e5b-8e21-498a927d8da1_mirnaseq_gdc_realn.bam 200222129 BAM harmonized CPTAC3 9f70238f-4774-4415-ab05-76420e744a0d 5be82be2696c5d1ba2a722755604dc87 {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.miRNA-Seq.S133_L007_R1.T C3L-02625 LSCC miRNA-Seq tumor CPT0191710009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATGTCA_S133_L007_R1_001.unaln.bam 314449509 BAM S133_L007_R1 unaligned CPTAC3 ed183a68-2ba2-46dc-9418-b8794aa696ce 20849afa04e2aa3a7a8b9239786e624f {"aliquot_tag": "ALQ_ef3dfabd", "sample": "S133", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02625.miRNA-Seq.S40_L002_R1.A C3L-02625 LSCC miRNA-Seq tissue_normal CPT0191750006 190206_UNC31-K00269_0191_AH2WY5BBXY_GATCAG_S40_L002_R1_001.unaln.bam 177523803 BAM S40_L002_R1 unaligned CPTAC3 c17d22d1-17f1-412f-8b7a-7192cce2386e f7f12f47561dc1d05791a25bdf6e620e {"aliquot_tag": "ALQ_8a0241ec", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.miRNA-Seq.T.hg38 C3L-02625 LSCC miRNA-Seq tumor CPT0191710009 b7e27b07-7f9d-4ac5-a3b8-c73faf86d07d_mirnaseq_gdc_realn.bam 337317416 BAM harmonized CPTAC3 5e258607-9690-4377-a6bc-dec475380099 41dfc875320aed2c7a7937ed3f51d7b7 {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor"} -C3L-02625.RNA-Seq.chimeric.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.chimeric.gdc_realn.bam 54260379 BAM chimeric harmonized CPTAC3 7098e1c3-16a8-4384-be5b-b3573f9b7529 73d2d7820083fe1019f40fec493cf70c {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.RNA-Seq.chimeric.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.chimeric.gdc_realn.bam 62986653 BAM chimeric harmonized CPTAC3 5d41ff28-5c19-4b85-96c1-36b204e07bae 0f4757437a968ef80489a406dffc47d5 {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor"} -C3L-02625.RNA-Seq.genomic.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.genomic.gdc_realn.bam 8447707178 BAM genomic harmonized CPTAC3 8bcebcbd-b626-46d1-bb20-1c48f7024d7a d85ec85211ea410a8dd479c529814eeb {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.RNA-Seq.genomic.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.genomic.gdc_realn.bam 9739833130 BAM genomic harmonized CPTAC3 809f7a84-1656-47d3-9d3c-f4184853a9e0 d0cb9dddf75c3e32dfccbcfd63203fbb {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor"} -C3L-02625.RNA-Seq.S17_L005_R1.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4106569240 FASTQ S17_L005_R1 unaligned CPTAC3 28c96c62-3cea-4588-81da-ddf4d0d1ec20 a25822ea27a351f5172dabff1a968fb6 {"aliquot_tag": "ALQ_ef3dfabd", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02625.RNA-Seq.S17_L005_R2.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4451710393 FASTQ S17_L005_R2 unaligned CPTAC3 f42ddcfe-9bab-4114-a5f6-fc7bafcaf4af 29503dffbe665894681b181e5d15192f {"aliquot_tag": "ALQ_ef3dfabd", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02625.RNA-Seq.S18_L005_R1.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R1_001.fastq.gz 3961905437 FASTQ S18_L005_R1 unaligned CPTAC3 0ae34a3f-8738-4980-8091-9fdef3e94af9 066ddf53db463b1741bfab3966fe8a1e {"aliquot_tag": "ALQ_8a0241ec", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.RNA-Seq.S18_L005_R2.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R2_001.fastq.gz 4365451645 FASTQ S18_L005_R2 unaligned CPTAC3 381b6fc2-3ebb-4ff8-84c9-a8096f90a2a4 081f3234241d5bcaeab715b5012a6d92 {"aliquot_tag": "ALQ_8a0241ec", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.RNA-Seq.transcriptome.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.transcriptome.gdc_realn.bam 9389168150 BAM transcriptome harmonized CPTAC3 17b29a50-6256-4639-a8c1-3b933dd576c5 9686dbc32a7330589e2f70b0c45e620e {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.RNA-Seq.transcriptome.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.transcriptome.gdc_realn.bam 10162551868 BAM transcriptome harmonized CPTAC3 5475cc0e-b455-46da-a36f-181a74d294db bd33860c8e59e9c39629e040b44bd46a {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor"} -C3L-02625.WGS.A C3L-02625 LSCC WGS tissue_normal CPT0191750009 CPT0191750009.WholeGenome.RP-1303.bam 64228150615 BAM aligned CPTAC3 8ccc5bb1-8cbb-49e4-bfe8-d6dbd823f187 fca357c0056862acb64519795ddc7ce7 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.WGS.A.hg38 C3L-02625 LSCC WGS tissue_normal CPT0191750009 3d635e4b-4492-423c-9c73-64d6049459b1_wgs_gdc_realn.bam 94772144631 BAM harmonized CPTAC3 a0179fa2-781e-404e-bc4e-a18ef1a56c5c 7e1c79f2621b94d2eb2580bbd9c2d71e {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.WGS.N C3L-02625 LSCC WGS blood_normal CPT0191850005 CPT0191850005.WholeGenome.RP-1303.bam 55070268209 BAM aligned CPTAC3 c714421c-9661-4777-b9e8-6707693d3c34 56f4a2e4fbba8c58378de51ab1a21823 {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal"} -C3L-02625.WGS.N.hg38 C3L-02625 LSCC WGS blood_normal CPT0191850005 0a96746b-2a5a-4b98-9b2e-7d3207b988fd_wgs_gdc_realn.bam 78884685977 BAM harmonized CPTAC3 020dc66a-179f-4169-a126-39220d939638 7ee081977d12f8e5efbd896cd89bdaaf {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal"} -C3L-02625.WGS.T C3L-02625 LSCC WGS tumor CPT0191710006 CPT0191710006.WholeGenome.RP-1303.bam 65592718773 BAM aligned CPTAC3 4aa28d3e-f756-42cf-99aa-5c8f3e4f9401 67a79fc4fb9e79489748f2c540546f96 {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor"} -C3L-02625.WGS.T.hg38 C3L-02625 LSCC WGS tumor CPT0191710006 55194cd1-6ee4-4c6c-ab7e-ff73a429a1a9_wgs_gdc_realn.bam 97566477168 BAM harmonized CPTAC3 1f0e16a9-631d-4c09-9bc3-34ec395d7ce3 b38c79e82c25d53a50950cd2351311c2 {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor"} -C3L-02625.WXS.A C3L-02625 LSCC WXS tissue_normal CPT0191750009 CPT0191750009.WholeExome.RP-1303.bam 27423755743 BAM aligned CPTAC3 0e2b170b-06ca-4f6a-9650-4db1c1053a59 170184920d15f8ba0cce392d602f4904 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.WXS.A.hg38 C3L-02625 LSCC WXS tissue_normal CPT0191750009 3d635e4b-4492-423c-9c73-64d6049459b1_wxs_gdc_realn.bam 38268225866 BAM harmonized CPTAC3 54003886-44e6-4edd-98ed-e3098639a46e f95caadce812779db2d77457de088ee6 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02625.WXS.N C3L-02625 LSCC WXS blood_normal CPT0191850005 CPT0191850005.WholeExome.RP-1303.bam 21572301343 BAM aligned CPTAC3 3b022d22-1a43-49c7-bf5a-474591470087 54d4f617f0764ea86f1c4884de1b8d3d {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal"} -C3L-02625.WXS.N.hg38 C3L-02625 LSCC WXS blood_normal CPT0191850005 0a96746b-2a5a-4b98-9b2e-7d3207b988fd_wxs_gdc_realn.bam 29276956433 BAM harmonized CPTAC3 2f6f9af5-6508-440e-8574-4a543fe0a178 be0365b08665270ee11879897a260a16 {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal"} -C3L-02625.WXS.T C3L-02625 LSCC WXS tumor CPT0191710006 CPT0191710006.WholeExome.RP-1303.bam 26514868958 BAM aligned CPTAC3 6f24da77-0ea6-403f-b6e2-f121d9581eb6 54ca1b22271aecc72b799ef0efe284ec {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor"} -C3L-02625.WXS.T.hg38 C3L-02625 LSCC WXS tumor CPT0191710006 55194cd1-6ee4-4c6c-ab7e-ff73a429a1a9_wxs_gdc_realn.bam 35995008962 BAM harmonized CPTAC3 c68a5bf3-4377-43a7-8f93-42ecd178bc3c 3bb2a4bddb8cc7e0432f98c21b6dc28f {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor"} -C3L-02627.MethArray.Green.A C3L-02627 LSCC Methylation_Array tissue_normal CPT0202040006 203219670066_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1c3e1673-e8c0-4e37-83ef-442cd2429ff6 4996ea1f567ebf945d1f1a7e867c7a3e {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.MethArray.Green.T C3L-02627 LSCC Methylation_Array tumor CPT0202020011 203219720176_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bbbb3ff9-ffe3-4ed5-9d16-07e42dee6bc6 c0e1dbfbd18aab1bd377627c8a224e9f {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor"} -C3L-02627.MethArray.Red.A C3L-02627 LSCC Methylation_Array tissue_normal CPT0202040006 203219670066_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 33b5f2ac-2491-488f-9097-aa2a4513ae73 831db0059632dff8fabaf51354beba84 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.MethArray.Red.T C3L-02627 LSCC Methylation_Array tumor CPT0202020011 203219720176_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 28974841-7910-4fb1-aef5-ec3582c82bac 6769c8a548de2595c171e49999c2385b {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor"} -C3L-02627.miRNA-Seq.A.hg38 C3L-02627 LSCC miRNA-Seq tissue_normal CPT0202040009 279d6829-9610-4b33-bba1-0de894404c68_mirnaseq_gdc_realn.bam 224904762 BAM harmonized CPTAC3 f52d9858-6e61-46ac-abd6-bd430d36de9d dbc29349eb09d6f48cea72736d6e0616 {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.miRNA-Seq.S19_L001_R1.T C3L-02627 LSCC miRNA-Seq tumor CPT0202020014 190206_UNC31-K00269_0191_AH2WY5BBXY_CACTCA_S19_L001_R1_001.unaln.bam 188769947 BAM S19_L001_R1 unaligned CPTAC3 9befded7-bbe2-4ffa-b80f-292d2aca1a78 1fa4c87c89ed0a4e90eb99392527ca71 {"aliquot_tag": "ALQ_c518c05a", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02627.miRNA-Seq.S47_L004_R1.A C3L-02627 LSCC miRNA-Seq tissue_normal CPT0202040009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGATGT_S47_L004_R1_001.unaln.bam 198454448 BAM S47_L004_R1 unaligned CPTAC3 8720ffef-260c-4db0-9b9e-574a72d5f757 4b56ffb8d01c0d2be41b0cc17221e8fd {"aliquot_tag": "ALQ_2df27806", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.miRNA-Seq.T.hg38 C3L-02627 LSCC miRNA-Seq tumor CPT0202020014 c127d63f-ae47-408c-b5c1-6d766c42d7c6_mirnaseq_gdc_realn.bam 211587056 BAM harmonized CPTAC3 f769ccb7-b53c-458c-9cad-5933424076bf 7f864edd47379cebc98d0efcc73353eb {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor"} -C3L-02627.RNA-Seq.chimeric.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.chimeric.gdc_realn.bam 65993189 BAM chimeric harmonized CPTAC3 a5deba80-218c-4378-9ae4-58997ff1ea85 4f67590dc65c6a4c36e99423c4e1c207 {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.RNA-Seq.chimeric.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.chimeric.gdc_realn.bam 287110191 BAM chimeric harmonized CPTAC3 6a5e3b57-d8a4-422f-ae6f-ef25464279b0 182a0f089b113940f7fe6a5dbd974c12 {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor"} -C3L-02627.RNA-Seq.genomic.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.genomic.gdc_realn.bam 8134397245 BAM genomic harmonized CPTAC3 c59485b2-4c17-43df-b2cb-5658d9c3b921 5adedde3542fb9fc803b8e0405b3959a {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.RNA-Seq.genomic.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.genomic.gdc_realn.bam 7986992531 BAM genomic harmonized CPTAC3 08691b35-e66f-4de2-9171-733121628003 18d38d72e72e0e01b0ba595f7b2983e7 {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor"} -C3L-02627.RNA-Seq.S22_L007_R1.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R1_001.fastq.gz 3920327205 FASTQ S22_L007_R1 unaligned CPTAC3 fbada907-d74d-4ca1-9f34-ee73a0dba9d6 59737002c9fc1ba9f4e5cb1e1bec9124 {"aliquot_tag": "ALQ_2df27806", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.RNA-Seq.S22_L007_R2.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R2_001.fastq.gz 4177765336 FASTQ S22_L007_R2 unaligned CPTAC3 3653291b-d499-455b-8567-429fc2470f86 dbeec35c7836cbe9e7c7393584c41d57 {"aliquot_tag": "ALQ_2df27806", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.RNA-Seq.S24_L006_R1.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3449870478 FASTQ S24_L006_R1 unaligned CPTAC3 06fdf88a-5317-432c-861d-a33566c8289d ed915cbb9d148970310e50e7ae2bdbff {"aliquot_tag": "ALQ_c518c05a", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02627.RNA-Seq.S24_L006_R2.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3772929069 FASTQ S24_L006_R2 unaligned CPTAC3 f7775c82-5064-4aa9-b045-ef1acd72e1e7 271acb971eb60fce2ed097532efd0ec8 {"aliquot_tag": "ALQ_c518c05a", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02627.RNA-Seq.transcriptome.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.transcriptome.gdc_realn.bam 8755648171 BAM transcriptome harmonized CPTAC3 1595eeba-3c99-4527-8344-48706369337b 5a8d6ca3f58b2a2c5fe00c464193eb33 {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.RNA-Seq.transcriptome.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.transcriptome.gdc_realn.bam 9752846783 BAM transcriptome harmonized CPTAC3 c3ed99ea-6ac6-4147-859f-65789fbfbca2 37b9b1510c84f3cdc32f2574ac2df6b2 {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor"} -C3L-02627.WGS.A C3L-02627 LSCC WGS tissue_normal CPT0202040006 CPT0202040006.WholeGenome.RP-1303.bam 56787159670 BAM aligned CPTAC3 238ae579-f251-40bb-a23c-c6a03ca46853 dd3712f2a4c7250605d279f63eded3c1 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.WGS.A.hg38 C3L-02627 LSCC WGS tissue_normal CPT0202040006 d7371f00-8697-4a03-ba6f-8a87c790aaea_wgs_gdc_realn.bam 82406035207 BAM harmonized CPTAC3 bb075bbc-e4d4-4332-9475-26592fc857db 2862a1d5edd37e7b1d292cb725fc0ef8 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.WGS.N C3L-02627 LSCC WGS blood_normal CPT0202150002 CPT0202150002.WholeGenome.RP-1303.bam 54442253124 BAM aligned CPTAC3 9c35e39d-99bd-4e74-a44c-56381468eff1 93e9c4da44b0d0928a7852e350871a44 {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02627.WGS.N.hg38 C3L-02627 LSCC WGS blood_normal CPT0202150002 5ef6c53e-92c4-4938-add5-99d12373b127_wgs_gdc_realn.bam 77925801567 BAM harmonized CPTAC3 ef6b3cab-f35e-4315-8762-b289ca547298 3e8970effbf593c9aff921415935be6b {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02627.WGS.T C3L-02627 LSCC WGS tumor CPT0202020011 CPT0202020011.WholeGenome.RP-1303.bam 59089596391 BAM aligned CPTAC3 65cea423-d231-4e81-8379-72b177bdc466 cc27e10d0639778cef5639bc466e69b6 {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor"} -C3L-02627.WGS.T.hg38 C3L-02627 LSCC WGS tumor CPT0202020011 99cc8223-ac71-4ad0-bbe4-f1e683686c6d_wgs_gdc_realn.bam 83456753519 BAM harmonized CPTAC3 70088342-ad1b-4309-9861-5c4c965319aa 35d9de99e8cbd783bb141855cbd56024 {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor"} -C3L-02627.WXS.A C3L-02627 LSCC WXS tissue_normal CPT0202040006 CPT0202040006.WholeExome.RP-1303.bam 27166247907 BAM aligned CPTAC3 97506b76-b751-46df-84d0-7b6618728641 1ed19fa8fc738733113e1cb91c6617c0 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.WXS.A.hg38 C3L-02627 LSCC WXS tissue_normal CPT0202040006 d7371f00-8697-4a03-ba6f-8a87c790aaea_wxs_gdc_realn.bam 36979083966 BAM harmonized CPTAC3 66aa5fba-3313-48f7-a2cb-6854fc841364 7800dcf0d42b6a258d3ba47a3b6bfc30 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02627.WXS.N C3L-02627 LSCC WXS blood_normal CPT0202150002 CPT0202150002.WholeExome.RP-1303.bam 29747826866 BAM aligned CPTAC3 ca83277d-0bd8-4011-95fb-c6e2d48cd3dd 5712f37b0299aa03ed24d4055be9c10f {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02627.WXS.N.hg38 C3L-02627 LSCC WXS blood_normal CPT0202150002 5ef6c53e-92c4-4938-add5-99d12373b127_wxs_gdc_realn.bam 40790098816 BAM harmonized CPTAC3 aea309eb-a90e-42aa-9be6-30c600769711 b25aa68bf72fd8e270460a1056bc13f9 {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02627.WXS.T C3L-02627 LSCC WXS tumor CPT0202020011 CPT0202020011.WholeExome.RP-1303.bam 30361272443 BAM aligned CPTAC3 99d8136e-670a-4738-9432-410721e7a101 531e93c423ed350a171d7a613f486d2c {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor"} -C3L-02627.WXS.T.hg38 C3L-02627 LSCC WXS tumor CPT0202020011 99cc8223-ac71-4ad0-bbe4-f1e683686c6d_wxs_gdc_realn.bam 41574623283 BAM harmonized CPTAC3 48780329-8ba0-439a-a720-13c3213bc925 9bc71de754699b02211471ccfab0c3f0 {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor"} -C3L-02629.MethArray.Green.A C3L-02629 LSCC Methylation_Array tissue_normal CPT0202220007 203219760065_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 af203d49-2cc9-40e0-a247-dc364403c777 eed40e75a332b1752058b67498cae67d {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.MethArray.Green.T C3L-02629 LSCC Methylation_Array tumor CPT0202170006 203219650127_R04C01_Grn.idat 13676217 IDAT Green NA CPTAC3 f13155d9-3e9d-44bd-be7e-56ee9d9ab3f6 134af8e8f2a0a6a34c596525f51cc740 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor"} -C3L-02629.MethArray.Red.A C3L-02629 LSCC Methylation_Array tissue_normal CPT0202220007 203219760065_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 c4a1b09c-db9b-4072-a62e-79337252fb53 a7686a0dbf232687c9220bdfefec566b {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.MethArray.Red.T C3L-02629 LSCC Methylation_Array tumor CPT0202170006 203219650127_R04C01_Red.idat 13676217 IDAT Red NA CPTAC3 2d31692b-8859-44cb-8ce4-c28e9a44cb43 2cc1b80e18dbe351f4d6846cc190bbf6 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor"} -C3L-02629.miRNA-Seq.A.hg38 C3L-02629 LSCC miRNA-Seq tissue_normal CPT0202220010 c8a78037-4a0e-466e-8f5e-11a158a1af0a_mirnaseq_gdc_realn.bam 217170392 BAM harmonized CPTAC3 cb014ba4-e9b1-4706-89cc-dbc6ea84e31d 1ae116e3104764217fcd91092f2bfb02 {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.miRNA-Seq.S18_L001_R1.T C3L-02629 LSCC miRNA-Seq tumor CPT0202170009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGGCG_S18_L001_R1_001.unaln.bam 159836036 BAM S18_L001_R1 unaligned CPTAC3 013d94f0-fa5c-42aa-9b4e-5d225fa541a3 c9313c8a2afc34694b8815779df01bd5 {"aliquot_tag": "ALQ_a10ed173", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02629.miRNA-Seq.S46_L004_R1.A C3L-02629 LSCC miRNA-Seq tissue_normal CPT0202220010 190206_UNC31-K00269_0191_AH2WY5BBXY_TTAGGC_S46_L004_R1_001.unaln.bam 195060644 BAM S46_L004_R1 unaligned CPTAC3 4264a349-f21a-4b88-b00b-1fff76ea9ecd 9404c3e0de999b96e49accaaf977b4fb {"aliquot_tag": "ALQ_8fbda548", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.miRNA-Seq.T.hg38 C3L-02629 LSCC miRNA-Seq tumor CPT0202170009 4cc50975-5588-490d-8fc2-1b6dc3777764_mirnaseq_gdc_realn.bam 175699702 BAM harmonized CPTAC3 c83355f8-8404-40da-88e0-eee2746c1ef1 90771ddd34668587d2a9d0b480853390 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor"} -C3L-02629.RNA-Seq.chimeric.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.chimeric.gdc_realn.bam 60124755 BAM chimeric harmonized CPTAC3 76c0cbc8-d4c0-4942-a49d-0fd5b966d868 9372ce93d2f32892951b654f460f0ebd {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.RNA-Seq.chimeric.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.chimeric.gdc_realn.bam 123782511 BAM chimeric harmonized CPTAC3 63bebd41-349b-43df-a6ac-0216541484b0 cbea6adde52184f7ce2e27e00c41e3a1 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor"} -C3L-02629.RNA-Seq.genomic.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.genomic.gdc_realn.bam 7717172543 BAM genomic harmonized CPTAC3 27854c5a-1753-458d-a52a-951d91509ec0 f8752d03b34e9b5bba49e964451f6837 {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.RNA-Seq.genomic.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.genomic.gdc_realn.bam 9778814371 BAM genomic harmonized CPTAC3 54a5e126-f56b-45bb-a663-4d544898ed8f 6e939b140f7f116c0cd5325134e84bd0 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor"} -C3L-02629.RNA-Seq.S23_L007_R1.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R1_001.fastq.gz 3529518354 FASTQ S23_L007_R1 unaligned CPTAC3 82e7b413-d581-4842-b166-c4151b876f26 897cfa202746eb81d18c6d6d4e782b6e {"aliquot_tag": "ALQ_8fbda548", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.RNA-Seq.S23_L007_R2.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R2_001.fastq.gz 3795486983 FASTQ S23_L007_R2 unaligned CPTAC3 d43fb6ff-5fdf-4c7d-980a-36751852488a b6ee2043675a612cf41c6dd8ddcb9d1d {"aliquot_tag": "ALQ_8fbda548", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.RNA-Seq.S2_L001_R1.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R1_001.fastq.gz 4073208240 FASTQ S2_L001_R1 unaligned CPTAC3 01819a3f-5ba5-4885-a6ed-1a6e2ad9b18c cb3efd6744c1d13503407f4f81b1108f {"aliquot_tag": "ALQ_a10ed173", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02629.RNA-Seq.S2_L001_R2.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R2_001.fastq.gz 4553845696 FASTQ S2_L001_R2 unaligned CPTAC3 d571cdec-01e1-4674-8842-18f97f51ba8e 12837bdcd1323c78b00505d9e68176b4 {"aliquot_tag": "ALQ_a10ed173", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02629.RNA-Seq.transcriptome.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.transcriptome.gdc_realn.bam 8184674017 BAM transcriptome harmonized CPTAC3 6a88ffcf-9474-4e81-8ab2-ea07dd594612 6d9408d811391ced0c257bc0a77cfd8b {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.RNA-Seq.transcriptome.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.transcriptome.gdc_realn.bam 10903464294 BAM transcriptome harmonized CPTAC3 c018859f-90f7-437c-b317-f8ac19481377 31fac948fe8fbeb8d7ea802cc9bbe531 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor"} -C3L-02629.WGS.A C3L-02629 LSCC WGS tissue_normal CPT0202220007 CPT0202220007.WholeGenome.RP-1303.bam 58574571733 BAM aligned CPTAC3 535f75b8-77db-4e5f-8b9c-f05361e8787d 33b37e0e1e792423d8871972f6b47975 {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.WGS.A.hg38 C3L-02629 LSCC WGS tissue_normal CPT0202220007 0fe4767b-76e5-4b00-ac44-8396e660e293_wgs_gdc_realn.bam 86449032257 BAM harmonized CPTAC3 4bc1bedc-2686-49c2-b393-10e60d4c896c 68903703e9f3ba25d30010e6de55083e {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.WGS.N C3L-02629 LSCC WGS blood_normal CPT0202330002 CPT0202330002.WholeGenome.RP-1303.bam 60772617878 BAM aligned CPTAC3 6a09cd56-af63-4429-81af-a3545ba4b869 3dd453736e09ade807b35dfe8206aad6 {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal"} -C3L-02629.WGS.N.hg38 C3L-02629 LSCC WGS blood_normal CPT0202330002 bf479ce0-c55c-4c56-bf9c-67c949a3fb06_wgs_gdc_realn.bam 87870129416 BAM harmonized CPTAC3 ac7e6d30-242f-4c4a-9482-1c53fdd54e57 f6e358a1f315a34d7248690247c5e076 {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal"} -C3L-02629.WGS.T C3L-02629 LSCC WGS tumor CPT0202170006 CPT0202170006.WholeGenome.RP-1303.bam 64404138440 BAM aligned CPTAC3 785d8e57-c9a0-45b8-b01b-9814ffdd2274 e7def8ea950996ad2f32ac3bbc81cf96 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor"} -C3L-02629.WGS.T.hg38 C3L-02629 LSCC WGS tumor CPT0202170006 03fcf9b5-9cc3-4f38-b28b-f6fd65bab61e_wgs_gdc_realn.bam 92464028310 BAM harmonized CPTAC3 38b75c50-e5ad-43a5-83d8-642eb3c2db80 08f221383a6eab3d55fe6f13bfef3d6c {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor"} -C3L-02629.WXS.A C3L-02629 LSCC WXS tissue_normal CPT0202220007 CPT0202220007.WholeExome.RP-1303.bam 20511603726 BAM aligned CPTAC3 737bb422-a6e9-43e4-b8a0-2ff3f3902cc8 66b45827101d042a9845efdc61f1eb6d {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.WXS.A.hg38 C3L-02629 LSCC WXS tissue_normal CPT0202220007 0fe4767b-76e5-4b00-ac44-8396e660e293_wxs_gdc_realn.bam 28587679530 BAM harmonized CPTAC3 6d99b57e-0eaa-4bdb-bdc5-3a645decd39f 51354613f2268cf5fd8f93afb66f1b25 {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02629.WXS.N C3L-02629 LSCC WXS blood_normal CPT0202330002 CPT0202330002.WholeExome.RP-1303.bam 24100668225 BAM aligned CPTAC3 815be893-2c84-4196-a37b-23db5597c696 e1abbe09dbc2f59dc86dc0db325a5a93 {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal"} -C3L-02629.WXS.N.hg38 C3L-02629 LSCC WXS blood_normal CPT0202330002 bf479ce0-c55c-4c56-bf9c-67c949a3fb06_wxs_gdc_realn.bam 33360412160 BAM harmonized CPTAC3 899cf82a-0664-4a9b-9b46-03a762cbfef6 3796c430e38e087dad5485f75f67ac9c {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal"} -C3L-02629.WXS.T C3L-02629 LSCC WXS tumor CPT0202170006 CPT0202170006.WholeExome.RP-1303.bam 18998295339 BAM aligned CPTAC3 a93d19e8-29d1-44a6-8a30-16aeedb3c153 75a51dedd5c72cbadc3983bb08b24f0d {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor"} -C3L-02629.WXS.T.hg38 C3L-02629 LSCC WXS tumor CPT0202170006 03fcf9b5-9cc3-4f38-b28b-f6fd65bab61e_wxs_gdc_realn.bam 26676891735 BAM harmonized CPTAC3 51e541b7-9f04-40ff-8dc6-9221d1fc1089 2bdcb9f978f9ce603f76b0d11b848042 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor"} -C3L-02642.MethArray.Green.T C3L-02642 GBM Methylation_Array tumor CPT0201710006 203219640102_R06C01_Grn.idat 13676219 IDAT Green NA CPTAC3 8e75a75b-fe3b-4958-883c-d24ecfcfc10d d7a98c549dd1746b5060b5846686f763 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor"} -C3L-02642.MethArray.Red.T C3L-02642 GBM Methylation_Array tumor CPT0201710006 203219640102_R06C01_Red.idat 13676219 IDAT Red NA CPTAC3 fe8e25ab-0fd5-4ceb-836b-12fc49f8d43e 0c76618b178f1a824c72152fbfe9db43 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor"} -C3L-02642.miRNA-Seq.S12_L007_R1.T C3L-02642 GBM miRNA-Seq tumor CPT0201710009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L007_R1_001.unaln.bam 311179903 BAM S12_L007_R1 unaligned CPTAC3 6fc858be-fcf9-488d-a4f5-694573260ec3 b0365c784f5bf0f4ffa75637d1050fe3 {"aliquot_tag": "ALQ_c9ffdd53", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02642.miRNA-Seq.T.hg38 C3L-02642 GBM miRNA-Seq tumor CPT0201710009 109d7654-7e6a-4b17-8f82-b16379140f86_mirnaseq_gdc_realn.bam 352589709 BAM harmonized CPTAC3 a38f69af-c019-4904-a100-da6dbe8c6e12 13c70c706e228936dc2f30e415b5e014 {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor"} -C3L-02642.RNA-Seq.chimeric.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.chimeric.gdc_realn.bam 44624439 BAM chimeric harmonized CPTAC3 2382fe10-9e84-40f0-bec5-b990d2734cce 336bd6044aaebe8e074183c94a9837ae {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor"} -C3L-02642.RNA-Seq.genomic.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.genomic.gdc_realn.bam 7699433886 BAM genomic harmonized CPTAC3 ef9146e5-ec71-44ad-b084-63f2aefde6c7 650ee79fa1b65fbecd05f705536d5cca {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor"} -C3L-02642.RNA-Seq.S13_L004_R1.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3672568158 FASTQ S13_L004_R1 unaligned CPTAC3 4334c783-04ef-40ab-9904-68713ce55e58 6ff4c67622aae847cd459fab6c4012e4 {"aliquot_tag": "ALQ_c9ffdd53", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02642.RNA-Seq.S13_L004_R2.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3778707964 FASTQ S13_L004_R2 unaligned CPTAC3 7cc72175-22fd-41bc-a316-523ce9741ad2 959d86c6c2b45535421dab642ada0e53 {"aliquot_tag": "ALQ_c9ffdd53", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02642.RNA-Seq.transcriptome.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.transcriptome.gdc_realn.bam 9171466128 BAM transcriptome harmonized CPTAC3 16110ff2-eaca-4941-8238-b19d31bacba6 1e0605a4fdbaf2e5be701d6545442505 {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor"} -C3L-02642.WGS.N C3L-02642 GBM WGS blood_normal CPT0201790002 CPT0201790002.WholeGenome.RP-1303.bam 67862526661 BAM aligned CPTAC3 771c1507-2100-4447-b0f0-626321e4e281 8a7fc95cc0270acd0156352334e6fa12 {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02642.WGS.N.hg38 C3L-02642 GBM WGS blood_normal CPT0201790002 e4bcfb72-dad1-4bc8-93d0-d813e1f4d518_wgs_gdc_realn.bam 99147007103 BAM harmonized CPTAC3 6a033ca3-1a89-4818-9753-e11146c7efa7 31f6be535151732484b6501fd792047f {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02642.WGS.T C3L-02642 GBM WGS tumor CPT0201710006 CPT0201710006.WholeGenome.RP-1303.bam 57205910103 BAM aligned CPTAC3 c77de080-567b-46ff-807a-7b2690986d5b df3fd994bc6633f707959dd19670eeb8 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor"} -C3L-02642.WGS.T.hg38 C3L-02642 GBM WGS tumor CPT0201710006 0e2478b9-f3b8-4b16-a88a-60fb7ebd30db_wgs_gdc_realn.bam 84095405766 BAM harmonized CPTAC3 7f184872-61e0-4f80-8648-06a2250657ec 1863448f3ef02455e12ab4b12caf987e {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor"} -C3L-02642.WXS.N C3L-02642 GBM WXS blood_normal CPT0201790002 CPT0201790002.WholeExome.RP-1303.bam 22664492576 BAM aligned CPTAC3 9497a007-0744-4012-9340-6e72469a3b90 dd643c43d7b25a7ecf637f0c6dd4ca94 {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02642.WXS.N.hg38 C3L-02642 GBM WXS blood_normal CPT0201790002 e4bcfb72-dad1-4bc8-93d0-d813e1f4d518_wxs_gdc_realn.bam 30981065082 BAM harmonized CPTAC3 4322defa-c5c1-415a-897a-e74645aebfc2 47275b68a23459a100b83ad6a3de0f72 {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02642.WXS.T C3L-02642 GBM WXS tumor CPT0201710006 CPT0201710006.WholeExome.RP-1303.bam 33972712303 BAM aligned CPTAC3 f4cedea4-c592-48c5-9704-03117b4f0ac8 bf0ba1a68eaed1c4c0b6ae61d7a04bb8 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor"} -C3L-02642.WXS.T.hg38 C3L-02642 GBM WXS tumor CPT0201710006 0e2478b9-f3b8-4b16-a88a-60fb7ebd30db_wxs_gdc_realn.bam 46623477935 BAM harmonized CPTAC3 03f5eee8-1996-44ee-90dc-7315d8d3a224 8c9a3bccbc8b6798cc5ba5f67edbefd0 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor"} -C3L-02643.MethArray.Green.A C3L-02643 LUAD Methylation_Array tissue_normal CPT0204490006 203273630258_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e9d2ac29-c2ae-4a86-a2ed-8ed0b192ee9d cd4b370a717a91260f997622bc72bab8 {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.MethArray.Green.T C3L-02643 LUAD Methylation_Array tumor CPT0204430007 203561620087_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 262aa966-a02c-4a5e-8a1c-925815d3148c 25d651f647e75346235eb50e4ef92375 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor"} -C3L-02643.MethArray.Red.A C3L-02643 LUAD Methylation_Array tissue_normal CPT0204490006 203273630258_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 f1fdcbfd-18e3-4c81-82e0-91cbb6a859a0 4273cdc749ef0e47129d48a274f2ec2f {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.MethArray.Red.T C3L-02643 LUAD Methylation_Array tumor CPT0204430007 203561620087_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f7d09def-374e-42d8-859d-45721be34a24 62a807cf10e9493da7df481f0a5a0aa2 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor"} -C3L-02643.miRNA-Seq.A.hg38 C3L-02643 LUAD miRNA-Seq tissue_normal CPT0204490009 1648ff02-786c-4a70-ad02-d4bb6835f318_mirnaseq_gdc_realn.bam 215705545 BAM harmonized CPTAC3 e74903f5-db0c-4b23-88a9-6412d67766d2 a711b17d1f5c8c4a53c18c34a1a43201 {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.miRNA-Seq.S23_L006_R1.A C3L-02643 LUAD miRNA-Seq tissue_normal CPT0204490009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATTCCT_S23_L006_R1_001.unaln.bam 190522527 BAM S23_L006_R1 unaligned CPTAC3 a4348dfd-2658-4c0d-8e04-bdd0f45d1c69 2d54c97766b799a74051a2e3924928a5 {"aliquot_tag": "ALQ_2d23cb9b", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.miRNA-Seq.S25_L004_R1.T C3L-02643 LUAD miRNA-Seq tumor CPT0204430010 190722_UNC31-K00269_0234_AH7VGTBBXY_CACGAT_S25_L004_R1_001.unaln.bam 210928658 BAM S25_L004_R1 unaligned CPTAC3 ca70e9db-1b5b-49c7-91d9-4d3c0e1f6505 e7672adf82470cd2e784d80411f72f25 {"aliquot_tag": "ALQ_7545adf", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02643.miRNA-Seq.T.hg38 C3L-02643 LUAD miRNA-Seq tumor CPT0204430010 39c56742-7820-4d53-bb49-6786922ef335_mirnaseq_gdc_realn.bam 230746522 BAM harmonized CPTAC3 43ba203f-eb21-477a-b6fb-60b230dd5a96 1ea46dcf6855d9e09d4f2febc7f5f146 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor"} -C3L-02643.RNA-Seq.chimeric.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.chimeric.gdc_realn.bam 28625694 BAM chimeric harmonized CPTAC3 ede54f48-7b5f-46e0-8408-f05738e2a65c fe34f7e1ca606423bf0fc413b462ebc1 {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.RNA-Seq.chimeric.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.chimeric.gdc_realn.bam 23559629 BAM chimeric harmonized CPTAC3 c0bb4856-1e12-42a5-bce8-9a000344fbdd d25818200cd1b2faa1177e7f5082c495 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor"} -C3L-02643.RNA-Seq.genomic.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.genomic.gdc_realn.bam 10435622568 BAM genomic harmonized CPTAC3 bc05b97f-70cb-45d7-a00e-6d6bbdb3afb2 6878b3fefa7da7909fbdff8529c761c2 {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.RNA-Seq.genomic.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.genomic.gdc_realn.bam 10843237123 BAM genomic harmonized CPTAC3 328ea0fc-e532-4d99-9f71-c37e01b9ffdb ff5b695612366cd845fac758fb439ed0 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor"} -C3L-02643.RNA-Seq.S19_L005_R1.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R1_001.fastq.gz 4036861909 FASTQ S19_L005_R1 unaligned CPTAC3 6383ee73-3338-4b7e-8969-1df003fb8f2a f63b75738d779e4d7be7c66dc11bd2fd {"aliquot_tag": "ALQ_2d23cb9b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.RNA-Seq.S19_L005_R2.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R2_001.fastq.gz 4514638201 FASTQ S19_L005_R2 unaligned CPTAC3 92f0abf9-21bf-4dd3-a3ad-83c13df95348 4d1c6399ed1649d015e4828297bfb9e9 {"aliquot_tag": "ALQ_2d23cb9b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.RNA-Seq.S27_L007_R1.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R1_001.fastq.gz 3293591724 FASTQ S27_L007_R1 unaligned CPTAC3 34430823-5630-4f94-80ed-4191d1abd67d 6f1c76fc37528f8307b7c9be10976e43 {"aliquot_tag": "ALQ_7545adf", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02643.RNA-Seq.S27_L007_R2.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R2_001.fastq.gz 3580550859 FASTQ S27_L007_R2 unaligned CPTAC3 55901808-5e7b-49b8-8741-2b461333176d cded07fc0578d9b3fe613045929512a4 {"aliquot_tag": "ALQ_7545adf", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02643.RNA-Seq.transcriptome.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.transcriptome.gdc_realn.bam 8479880546 BAM transcriptome harmonized CPTAC3 c2d3f033-8ae8-4062-a158-6285720cfb2d 02b09333922118b9b56db4e7ef0ad21a {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.RNA-Seq.transcriptome.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.transcriptome.gdc_realn.bam 6689127162 BAM transcriptome harmonized CPTAC3 b93b03a0-e85c-4278-ac7c-561c90581e95 4389edb737583044c6f68757d80e8140 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor"} -C3L-02643.WGS.N C3L-02643 LUAD WGS blood_normal CPT0204570002 CPT0204570002.WholeGenome.RP-1303.bam 67474004442 BAM aligned CPTAC3 e3960815-0ec8-4400-b5e6-bf216faed4bd 4aa8f2471fb1efbd2dd9575bd771e456 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02643.WGS.N.hg38 C3L-02643 LUAD WGS blood_normal CPT0204570002 51166242-6b89-4ecc-8879-769715f7f8c0_wgs_gdc_realn.bam 97542442181 BAM harmonized CPTAC3 f35ae767-3271-40d7-b2ec-0904342aa2b2 1e07623b05392841ff88ac950e4c9586 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02643.WGS.T C3L-02643 LUAD WGS tumor CPT0204430007 CPT0204430007.WholeGenome.RP-1303.bam 90180390370 BAM aligned CPTAC3 0b6f9a35-5974-4c6d-a117-9a99ad450687 beae574f63d13aa18067ca76a7427187 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor"} -C3L-02643.WGS.T.hg38 C3L-02643 LUAD WGS tumor CPT0204430007 6d8f8127-ca6c-4e64-9d5f-a92bc489b9e8_wgs_gdc_realn.bam 130965569768 BAM harmonized CPTAC3 d0e4e6cf-7c6a-43a4-9faa-d1863187b918 cf896798cf12212b1da2148a9ab517f0 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor"} -C3L-02643.WXS.A C3L-02643 LUAD WXS tissue_normal CPT0204490006 CPT0204490006.WholeExome.RP-1303.bam 20056843006 BAM aligned CPTAC3 42c5bfde-4e76-4806-ab87-4ea72804180d 8a0dd95bafefae8c3909bfd7f32e7c76 {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.WXS.A.hg38 C3L-02643 LUAD WXS tissue_normal CPT0204490006 7700dccb-869e-425e-8adc-853380b0937a_wxs_gdc_realn.bam 27710316576 BAM harmonized CPTAC3 568e6ad2-5b74-46b6-8adc-cb9236f72619 dc36ca1392e99d648288cf59b7c46382 {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02643.WXS.N C3L-02643 LUAD WXS blood_normal CPT0204570002 CPT0204570002.WholeExome.RP-1303.bam 22087432943 BAM aligned CPTAC3 1ea65c26-0042-4104-9472-a7b7de6165c1 4884c31deabb827caf484a9e8b900164 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02643.WXS.N.hg38 C3L-02643 LUAD WXS blood_normal CPT0204570002 51166242-6b89-4ecc-8879-769715f7f8c0_wxs_gdc_realn.bam 30506946079 BAM harmonized CPTAC3 5099a7f9-cdfc-4fa9-949f-7461f7e52f22 22e0af98e5773250a423ef716d6c1090 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02643.WXS.T C3L-02643 LUAD WXS tumor CPT0204430007 CPT0204430007.WholeExome.RP-1303.bam 20260634047 BAM aligned CPTAC3 f28d03f7-a2e3-4831-a12b-ef81054b05f7 b2614df6904ac148b279a9ee2af2ee29 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor"} -C3L-02643.WXS.T.hg38 C3L-02643 LUAD WXS tumor CPT0204430007 6d8f8127-ca6c-4e64-9d5f-a92bc489b9e8_wxs_gdc_realn.bam 28268902693 BAM harmonized CPTAC3 115bc719-1999-4d63-b788-a2e2107430d3 115f8f9361102de70673311a00a7597b {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor"} -C3L-02644.MethArray.Green.T C3L-02644 GBM Methylation_Array tumor CPT0227810007 204367490093_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6d87bace-c3c9-4958-9143-6a34d0362044 633c529954a66450f9083c7b5a01ed0d {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor"} -C3L-02644.MethArray.Red.T C3L-02644 GBM Methylation_Array tumor CPT0227810007 204367490093_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 dcf2f0e2-ff58-406c-97e3-d757907bcd11 ff4097dd3e1dedf8f54eb32858463177 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor"} -C3L-02644.miRNA-Seq.S40_L002_R1.T C3L-02644 GBM miRNA-Seq tumor CPT0227810010 200403_UNC31-K00269_0274_AHCF7GBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 198821121 BAM S40_L002_R1 unaligned CPTAC3 827c1489-052e-4eef-a733-e76d03044ff1 95f572043d34346a5c9f22aff3d40a67 {"aliquot_tag": "ALQ_799bd424", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02644.miRNA-Seq.T.hg38 C3L-02644 GBM miRNA-Seq tumor CPT0227810010 0fa0e305-2995-463b-b909-bec0df468cb0_mirnaseq_gdc_realn.bam 222417745 BAM harmonized CPTAC3 9db07d7e-0f32-423c-83d6-e1ae2d3d3d0b e57d81f01b57a4d9d3e54262b0f93763 {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor"} -C3L-02644.RNA-Seq.chimeric.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.chimeric.gdc_realn.bam 266762654 BAM chimeric harmonized CPTAC3 d61c2bfe-fd5d-4a78-b58e-bec74b2d46c0 bc9715d900895fbd90d40ea41a01e18b {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor"} -C3L-02644.RNA-Seq.genomic.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.genomic.gdc_realn.bam 8695476013 BAM genomic harmonized CPTAC3 29437f61-e40c-47f1-9782-88da36e536c8 a272cda4502ac932bbb72fa34209d475 {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor"} -C3L-02644.RNA-Seq.S8_L002_R1.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R1_001.fastq.gz 3584181669 FASTQ S8_L002_R1 unaligned CPTAC3 e7a4ea3c-9561-401b-9378-7ec621b038ea 5620b26bba1e17463c8c58ec7d352c0f {"aliquot_tag": "ALQ_799bd424", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02644.RNA-Seq.S8_L002_R2.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ S8_L002_R2 unaligned CPTAC3 10aec24b-bc0f-4ee3-9179-a94b8da520f4 859d04392f23dbf23daffd5bdbb09f65 {"aliquot_tag": "ALQ_799bd424", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02644.RNA-Seq.transcriptome.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.transcriptome.gdc_realn.bam 8673036127 BAM transcriptome harmonized CPTAC3 4f25a100-9573-4d08-b27e-fe302d7af266 e6ba417d7545f034b3956490d02dddb2 {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor"} -C3L-02644.WGS.N C3L-02644 GBM WGS blood_normal CPT0227900002 CPT0227900002.WholeGenome.RP-2158.bam 26226631010 BAM aligned CPTAC3 91b131b2-0290-462e-b311-60d4e39aba78 63564d8473d7def7428d2607a95ecdde {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02644.WGS.N.hg38 C3L-02644 GBM WGS blood_normal CPT0227900002 6cdbd613-0752-40a2-9347-582356daf34f_wgs_gdc_realn.bam 76860325745 BAM harmonized CPTAC3 45a5b3d6-b371-4bf2-8477-3e06f8b6cb56 0e217be205a8f8c0886828381556548a {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02644.WGS.T C3L-02644 GBM WGS tumor CPT0227810007 CPT0227810007.WholeGenome.RP-2158.bam 27527064714 BAM aligned CPTAC3 a13b5822-be39-4ba1-9f54-902e9df06f95 10e67e30e7ed2c87dcfa21fad0d27284 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor"} -C3L-02644.WGS.T.hg38 C3L-02644 GBM WGS tumor CPT0227810007 46bef5ac-320b-47da-8f0b-ba57db403534_wgs_gdc_realn.bam 83884571975 BAM harmonized CPTAC3 fac8453c-2278-4a7a-8cca-571fb949d33e 47529e22657085a84e5a6a4e2b3f7c40 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor"} -C3L-02644.WXS.N C3L-02644 GBM WXS blood_normal CPT0227900002 CPT0227900002.WholeExome.RP-1303.bam 27011094237 BAM aligned CPTAC3 fc2e0bde-e7ba-4acb-8f99-eebdbb532cda b56eb09f3dcb775ad9abb1a7e8296272 {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02644.WXS.N.hg38 C3L-02644 GBM WXS blood_normal CPT0227900002 6cdbd613-0752-40a2-9347-582356daf34f_wxs_gdc_realn.bam 37600543856 BAM harmonized CPTAC3 d691a770-edf9-435f-9288-c9139d4c9f4c 07cb699a4ca4bfd587a36868024d6814 {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02644.WXS.T C3L-02644 GBM WXS tumor CPT0227810007 CPT0227810007.WholeExome.RP-1303.bam 16766796957 BAM aligned CPTAC3 64803679-490c-4aa5-8cb4-dc077cf3c19a 36d278226a74e239dca2819d500522bf {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor"} -C3L-02644.WXS.T.hg38 C3L-02644 GBM WXS tumor CPT0227810007 46bef5ac-320b-47da-8f0b-ba57db403534_wxs_gdc_realn.bam 23551420409 BAM harmonized CPTAC3 e996952c-e610-4e7e-af08-31671e9e9d7b 3b2bf4340101b259d83a03b535f03d57 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor"} -C3L-02646.MethArray.Green.T C3L-02646 LSCC Methylation_Array tumor CPT0202530007 203219640158_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a6d083c3-1574-488e-9491-a1fa7b2ad366 b2a4921d7dee795e55338c3b24d5076c {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor"} -C3L-02646.MethArray.Red.T C3L-02646 LSCC Methylation_Array tumor CPT0202530007 203219640158_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 f4c1332a-6966-4620-951d-20353bd13266 0afb32b3df4d71d41f707c2651b1524f {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor"} -C3L-02646.miRNA-Seq.S12_L001_R1.T C3L-02646 LSCC miRNA-Seq tumor CPT0202530010 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L001_R1_001.unaln.bam 235807563 BAM S12_L001_R1 unaligned CPTAC3 f91bc2a5-969c-4f31-a63b-33fcb8ad0dc8 d50112eaaf00806b596d9f82c4c18dfa {"aliquot_tag": "ALQ_afd8bc40", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02646.miRNA-Seq.T.hg38 C3L-02646 LSCC miRNA-Seq tumor CPT0202530010 1f2c18d6-50d1-478d-abb5-9bfbe8b7626c_mirnaseq_gdc_realn.bam 259787484 BAM harmonized CPTAC3 97564b70-95c1-4856-8cea-d8601505d858 5c0f8b30ca21847375cbbcf46b8771fb {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor"} -C3L-02646.RNA-Seq.chimeric.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.chimeric.gdc_realn.bam 109265186 BAM chimeric harmonized CPTAC3 9f682f08-1767-4d5f-842a-6649b8de98a1 38802167c96edb04ba5288062e8bd862 {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor"} -C3L-02646.RNA-Seq.genomic.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.genomic.gdc_realn.bam 7543172254 BAM genomic harmonized CPTAC3 8fa47143-9171-42a2-ad3c-bc6890494296 a118dfe3bb9fb66429fbe093bc62f8f3 {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor"} -C3L-02646.RNA-Seq.S6_L008_R1.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R1_001.fastq.gz 3114636179 FASTQ S6_L008_R1 unaligned CPTAC3 36760be8-bc8c-4f1f-bbb5-e7666c6d80ac 0dfd450ade12467a8ea2e747dead73ad {"aliquot_tag": "ALQ_afd8bc40", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02646.RNA-Seq.S6_L008_R2.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R2_001.fastq.gz 3369137067 FASTQ S6_L008_R2 unaligned CPTAC3 d90d060a-db2c-4010-bb49-fb57929dd7f9 7c25a4f4d4f1be2eec31098dd2a63678 {"aliquot_tag": "ALQ_afd8bc40", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02646.RNA-Seq.transcriptome.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.transcriptome.gdc_realn.bam 8019506056 BAM transcriptome harmonized CPTAC3 5c7a84d9-355f-481e-87ab-0b962f8eac7d 47fc805e0382ba494c2823ba1a25a2a1 {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor"} -C3L-02646.WGS.N C3L-02646 LSCC WGS blood_normal CPT0202660002 CPT0202660002.WholeGenome.RP-1303.bam 58127616048 BAM aligned CPTAC3 efc0d397-1c8e-4ffc-9e0b-cb4c90f9a592 799c9bcd335430884bbaa40b463d8fd0 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02646.WGS.N.hg38 C3L-02646 LSCC WGS blood_normal CPT0202660002 a0d0f408-012f-4580-b28d-aaad9ef55a9f_wgs_gdc_realn.bam 84464346595 BAM harmonized CPTAC3 ab08e047-4767-496d-8028-4150f9381989 31e7c83bcd9cdd260eb917124f193422 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02646.WGS.T C3L-02646 LSCC WGS tumor CPT0202530007 CPT0202530007.WholeGenome.RP-1303.bam 60895652962 BAM aligned CPTAC3 474201cb-aaf6-48c1-9844-85ff702fc292 e84c0225c35fe55317f49bdb7582d808 {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor"} -C3L-02646.WGS.T.hg38 C3L-02646 LSCC WGS tumor CPT0202530007 ffb7f59b-2554-45af-a0be-67a3c8c475e0_wgs_gdc_realn.bam 89037066609 BAM harmonized CPTAC3 59899683-9cfa-4471-aadd-caf311a8d5de 44dce6c58db1b72aec5396cfd02afef1 {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor"} -C3L-02646.WXS.N C3L-02646 LSCC WXS blood_normal CPT0202660002 CPT0202660002.WholeExome.RP-1303.bam 16697262385 BAM aligned CPTAC3 a15e1e2a-4cf2-41c6-a0b9-b30467522a49 492d2e96dcbd87565d66d62ac2441ef5 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02646.WXS.N.hg38 C3L-02646 LSCC WXS blood_normal CPT0202660002 a0d0f408-012f-4580-b28d-aaad9ef55a9f_wxs_gdc_realn.bam 23162153244 BAM harmonized CPTAC3 3ec28d87-2158-4bc0-a3b4-7a1c7d9baff8 bdcdaef801ccf6563b046b15cc9afc25 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02646.WXS.T C3L-02646 LSCC WXS tumor CPT0202530007 CPT0202530007.WholeExome.RP-1303.bam 19663876599 BAM aligned CPTAC3 7346604b-0377-403f-99d9-b26515e55d25 c479fd855a2233f4927c6268589afaf3 {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor"} -C3L-02646.WXS.T.hg38 C3L-02646 LSCC WXS tumor CPT0202530007 ffb7f59b-2554-45af-a0be-67a3c8c475e0_wxs_gdc_realn.bam 26923683521 BAM harmonized CPTAC3 b8b6ee6f-d4e3-40b6-926f-aa52eaa5189d 3724766e5a532e4ac4fb645a19181aaf {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor"} -C3L-02648.MethArray.Green.A C3L-02648 LSCC Methylation_Array tissue_normal CPT0204660006 203219650211_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0c9bf495-bc88-4663-9748-bfc14e04a032 0dde143ef8afc5085a83fce1b3d0ab0d {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.MethArray.Green.T C3L-02648 LSCC Methylation_Array tumor CPT0204600010 203219650100_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 878c0113-50fe-4e8a-b648-1c9a5145a4a1 6d77e53d08c5db073ddef04fa58eea1c {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor"} -C3L-02648.MethArray.Red.A C3L-02648 LSCC Methylation_Array tissue_normal CPT0204660006 203219650211_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 687a598e-a09c-48d2-be22-24a5ebd6705f 646a513edc1e42f6f712eddb25d771b2 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.MethArray.Red.T C3L-02648 LSCC Methylation_Array tumor CPT0204600010 203219650100_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 991f8fc7-6211-40b4-8ed4-1943bcf2eefc 82cc78689a430170ff37e1e808e42c5f {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor"} -C3L-02648.miRNA-Seq.A.hg38 C3L-02648 LSCC miRNA-Seq tissue_normal CPT0204660009 0a3e96bf-5a6b-44b2-bb7c-ebf8fc836d53_mirnaseq_gdc_realn.bam 232379933 BAM harmonized CPTAC3 76434566-9d3b-4bfb-b44e-e791b7e5fb83 155a6d348897f71aaa3231a225d33866 {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.miRNA-Seq.S20_L003_R1.A C3L-02648 LSCC miRNA-Seq tissue_normal CPT0204660009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACGAT_S20_L003_R1_001.unaln.bam 207678890 BAM S20_L003_R1 unaligned CPTAC3 d367db10-8a3d-4fa7-9b47-f2f9ad2e1101 c2dfe67cba0c44d2ae1015abc15c6835 {"aliquot_tag": "ALQ_e2bbfd41", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.miRNA-Seq.S7_L001_R1.T C3L-02648 LSCC miRNA-Seq tumor CPT0204600007 190206_UNC31-K00269_0191_AH2WY5BBXY_TATAAT_S7_L001_R1_001.unaln.bam 209723809 BAM S7_L001_R1 unaligned CPTAC3 1cd71e24-6b73-4b62-8885-4f98dc5cfaee 8a76b88961c7b7ec6977e0de9c650df7 {"aliquot_tag": "ALQ_8a4325e6", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02648.miRNA-Seq.T.hg38 C3L-02648 LSCC miRNA-Seq tumor CPT0204600007 b0b462af-3775-4a77-8fee-edce66426275_mirnaseq_gdc_realn.bam 239548197 BAM harmonized CPTAC3 3ad32c34-14ba-4527-b904-1e43f5ee0546 f2f2022a4752e7e0c2823ce4fdbc0aa0 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor"} -C3L-02648.RNA-Seq.chimeric.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.chimeric.gdc_realn.bam 167611945 BAM chimeric harmonized CPTAC3 a6cc8524-b5a7-4514-a1ec-aa6082942de8 5847a7e3e2686749a19533e63fc2dbed {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.RNA-Seq.chimeric.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.chimeric.gdc_realn.bam 120531942 BAM chimeric harmonized CPTAC3 0ee2e5a4-1393-4516-a7b9-8fae8906c996 c0920bdff408af1aa3d6d91a7d7dc4a3 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor"} -C3L-02648.RNA-Seq.genomic.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.genomic.gdc_realn.bam 8837248620 BAM genomic harmonized CPTAC3 238b2957-58c0-431d-be51-9cbfaf1f17ee 6dbde5419f13170a45084a9cfead5dbb {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.RNA-Seq.genomic.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.genomic.gdc_realn.bam 8177696835 BAM genomic harmonized CPTAC3 86484545-0621-40ad-b571-7fff5931cf8a dd30e2399d159f0780838fdd4d0e9df2 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor"} -C3L-02648.RNA-Seq.S5_L002_R1.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R1_001.fastq.gz 3550054685 FASTQ S5_L002_R1 unaligned CPTAC3 f8c24041-3a00-4433-9fa2-3630b4c2aaff ec5a4f3b22b69635e8b2b15492490c67 {"aliquot_tag": "ALQ_8a4325e6", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02648.RNA-Seq.S5_L002_R2.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R2_001.fastq.gz 4001546962 FASTQ S5_L002_R2 unaligned CPTAC3 1a7b33db-2d08-40f5-ac8e-88bdd1d3507a deac137e2324f3b9c240f9b9e63f6127 {"aliquot_tag": "ALQ_8a4325e6", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02648.RNA-Seq.S8_L002_R1.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4029772230 FASTQ S8_L002_R1 unaligned CPTAC3 929e8362-6fb7-4ee2-b72f-4189ccd885c6 de7677ab672ebe96033be26709c951d6 {"aliquot_tag": "ALQ_e2bbfd41", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.RNA-Seq.S8_L002_R2.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4506104079 FASTQ S8_L002_R2 unaligned CPTAC3 14c86078-8e3e-4341-8f4c-a841c8ece202 f93a11480b27d568d5246147cb39bf1d {"aliquot_tag": "ALQ_e2bbfd41", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.RNA-Seq.transcriptome.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.transcriptome.gdc_realn.bam 9896505295 BAM transcriptome harmonized CPTAC3 3d70d90a-247f-4d8f-af0f-77647570bbb5 0f11fe0361681f4195815271ace40ba1 {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.RNA-Seq.transcriptome.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.transcriptome.gdc_realn.bam 10175673190 BAM transcriptome harmonized CPTAC3 b951f506-2b78-4122-92f9-87638d463413 3bf806f8fa77773aa9d26f2b9d2a75b3 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor"} -C3L-02648.WGS.A C3L-02648 LSCC WGS tissue_normal CPT0204660006 CPT0204660006.WholeGenome.RP-1303.bam 57891947825 BAM aligned CPTAC3 ccc04fb8-5e4c-4a32-808d-42761c040880 11e40d5c770cccf55d16986d17989f4f {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.WGS.A.hg38 C3L-02648 LSCC WGS tissue_normal CPT0204660006 c2fd39e9-b12b-443e-8791-39c6b0eca5fb_wgs_gdc_realn.bam 84380514202 BAM harmonized CPTAC3 bd93be81-4c63-452e-9e39-720e44e4faf6 caa9b6e9e6df7ded66017010bb2dc091 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.WGS.N C3L-02648 LSCC WGS blood_normal CPT0204750002 CPT0204750002.WholeGenome.RP-1303.bam 59498095208 BAM aligned CPTAC3 5eeefcf1-0515-4b51-9df8-b30dfc143192 5d9b7bc07aeeddcf18126619e248b0d1 {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal"} -C3L-02648.WGS.N.hg38 C3L-02648 LSCC WGS blood_normal CPT0204750002 f67b7239-b480-45f2-99f9-8d791898bc76_wgs_gdc_realn.bam 86561325429 BAM harmonized CPTAC3 6de08dda-1701-465b-8ec2-e16b812b4daa 28f975bfccb405b15dfe51d466de4a15 {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal"} -C3L-02648.WGS.T C3L-02648 LSCC WGS tumor CPT0204600010 CPT0204600010.WholeGenome.RP-1303.bam 58964643008 BAM aligned CPTAC3 c972fac8-98e7-413d-a8fc-37da0b386456 1e8b07698d358311688ae979e21b525d {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor"} -C3L-02648.WGS.T.hg38 C3L-02648 LSCC WGS tumor CPT0204600010 ef93c6db-775c-4fb4-9ccf-0a154af43b67_wgs_gdc_realn.bam 85582553962 BAM harmonized CPTAC3 382df309-7ba9-42b0-8b90-62894c829084 6459dae138f2fb231608107f0e31d1cd {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor"} -C3L-02648.WXS.A C3L-02648 LSCC WXS tissue_normal CPT0204660006 CPT0204660006.WholeExome.RP-1303.bam 19812004921 BAM aligned CPTAC3 2a22c44e-8fd6-4d42-9253-e315a18d9fc1 c2459ddc7f62f46be4398d8c5783cab7 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.WXS.A.hg38 C3L-02648 LSCC WXS tissue_normal CPT0204660006 c2fd39e9-b12b-443e-8791-39c6b0eca5fb_wxs_gdc_realn.bam 27344320214 BAM harmonized CPTAC3 32637388-6c79-4944-9af8-2d99611b2305 17140450df9f54ef4525620232652ba4 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02648.WXS.N C3L-02648 LSCC WXS blood_normal CPT0204750002 CPT0204750002.WholeExome.RP-1303.bam 29670529236 BAM aligned CPTAC3 39efa845-2cb8-4110-b0dd-7dad4aff8816 a0aa7c2f97177afcd30498e81de62d83 {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal"} -C3L-02648.WXS.N.hg38 C3L-02648 LSCC WXS blood_normal CPT0204750002 f67b7239-b480-45f2-99f9-8d791898bc76_wxs_gdc_realn.bam 40637543975 BAM harmonized CPTAC3 a839aaf0-87e8-4e89-a730-0cd8c2755ab6 a4ea66b98de4121478026b8d5a7c04bc {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal"} -C3L-02648.WXS.T C3L-02648 LSCC WXS tumor CPT0204600010 CPT0204600010.WholeExome.RP-1303.bam 20641774861 BAM aligned CPTAC3 98282110-4bba-40b9-a28f-993375e51ecc 63bdc270734b62d1e59f431806b1b1f7 {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor"} -C3L-02648.WXS.T.hg38 C3L-02648 LSCC WXS tumor CPT0204600010 ef93c6db-775c-4fb4-9ccf-0a154af43b67_wxs_gdc_realn.bam 29256497051 BAM harmonized CPTAC3 2db9ae7f-ef2e-4f53-80fd-57ea9461656f 9d63ae82a522ed265d91b6b514a3c156 {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor"} -C3L-02649.MethArray.Green.A C3L-02649 LSCC Methylation_Array tissue_normal CPT0204820006 203219640160_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8cc99b9a-6374-4437-9b9d-7be8e9547c51 88a49fab956c5c7ae84b07a007cbcbca {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.MethArray.Green.T C3L-02649 LSCC Methylation_Array tumor CPT0204800006 203219670117_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8396ebf1-faee-492b-aa73-f1b55fe8b2e0 ab8b047583df704e246f680a055eb606 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor"} -C3L-02649.MethArray.Red.A C3L-02649 LSCC Methylation_Array tissue_normal CPT0204820006 203219640160_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 f99a6196-9e86-4aaa-8865-ca0147600d21 79775dafd9c933567793af07ab718a63 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.MethArray.Red.T C3L-02649 LSCC Methylation_Array tumor CPT0204800006 203219670117_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 19865f41-3f6d-406f-8f1d-ecba690c3f54 65b527692e00279c0e0073b8aa2e3a50 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor"} -C3L-02649.miRNA-Seq.A.hg38 C3L-02649 LSCC miRNA-Seq tissue_normal CPT0204820009 2d74b848-808c-4e17-a828-cb78dc3c3bfd_mirnaseq_gdc_realn.bam 247938190 BAM harmonized CPTAC3 4c134a4d-956a-47ab-b24d-1f31a4aaefb0 e7c00bf80af121b039f1ff80f2f4c049 {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.miRNA-Seq.S19_L003_R1.A C3L-02649 LSCC miRNA-Seq tissue_normal CPT0204820009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACTCA_S19_L003_R1_001.unaln.bam 224053384 BAM S19_L003_R1 unaligned CPTAC3 94335aed-b8e6-4f85-9eb9-eb1070d34658 a61a19ff9c584ba0eb25e57fb7ca6105 {"aliquot_tag": "ALQ_2d313af1", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.miRNA-Seq.S6_L001_R1.T C3L-02649 LSCC miRNA-Seq tumor CPT0204800009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCATTC_S6_L001_R1_001.unaln.bam 148557787 BAM S6_L001_R1 unaligned CPTAC3 d3d296f3-ce9c-4bfc-b85c-7e30f48721b5 e27c177a3ee567f54e9d4d0f3b7c4bfb {"aliquot_tag": "ALQ_57f16991", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02649.miRNA-Seq.T.hg38 C3L-02649 LSCC miRNA-Seq tumor CPT0204800009 37e4900c-40e6-456b-892c-385db2f6f627_mirnaseq_gdc_realn.bam 165092007 BAM harmonized CPTAC3 4a36b2d4-1738-4375-aa48-bf72b998bf51 9cce43327d9e005b3dbe80ee3531687c {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor"} -C3L-02649.RNA-Seq.chimeric.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.chimeric.gdc_realn.bam 85759864 BAM chimeric harmonized CPTAC3 90516345-a170-4fb1-ba7e-6bde613d1311 a9afcaed696d0e59bf24ef3c563780b7 {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.RNA-Seq.chimeric.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.chimeric.gdc_realn.bam 122057575 BAM chimeric harmonized CPTAC3 deef0c56-bb0f-43c9-9e1e-05f88253b017 87ddae277e4ae52dbd4ec0d1c7613f8a {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor"} -C3L-02649.RNA-Seq.genomic.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.genomic.gdc_realn.bam 7063762763 BAM genomic harmonized CPTAC3 b40f715b-0a88-4f70-89b3-76ce14f094fd 9d8466167df74712ce937979133776cf {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.RNA-Seq.genomic.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.genomic.gdc_realn.bam 9009147555 BAM genomic harmonized CPTAC3 cd393110-6447-4292-bbb8-fa677a5d1e33 3de1bcdb1b0b0921325d468d005416ac {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor"} -C3L-02649.RNA-Seq.S6_L002_R1.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R1_001.fastq.gz 3924499029 FASTQ S6_L002_R1 unaligned CPTAC3 660ae3d2-975a-48fc-ad93-2c288f4c4cac ea22b3173fbec345bfdee298be72a469 {"aliquot_tag": "ALQ_57f16991", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02649.RNA-Seq.S6_L002_R2.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R2_001.fastq.gz 4358410672 FASTQ S6_L002_R2 unaligned CPTAC3 1d0ac55c-c17d-403f-b40c-2d29a5181eae 4245f32f30378d8f70ff4ba0eff764d4 {"aliquot_tag": "ALQ_57f16991", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02649.RNA-Seq.S7_L002_R1.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3068260409 FASTQ S7_L002_R1 unaligned CPTAC3 774c3f15-e308-4e3b-96bc-e30685e9655e 7580cdd6bdf27c6246c2ab7a72d8fd85 {"aliquot_tag": "ALQ_2d313af1", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.RNA-Seq.S7_L002_R2.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3400288572 FASTQ S7_L002_R2 unaligned CPTAC3 fb856237-c04a-45da-9d8b-8f8e15b97d38 076048e2d45ed4969f83035c153c886d {"aliquot_tag": "ALQ_2d313af1", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.RNA-Seq.transcriptome.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.transcriptome.gdc_realn.bam 7079438629 BAM transcriptome harmonized CPTAC3 243f1533-2923-472a-8f1c-43880c7f267d 6c2c70b0fe4ee8e374ff04a5b96d7dd7 {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.RNA-Seq.transcriptome.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.transcriptome.gdc_realn.bam 11292459117 BAM transcriptome harmonized CPTAC3 1baee544-e43c-42b8-8bfc-d66932a9022b 63938d828a1e746489fd505f5582363c {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor"} -C3L-02649.WGS.A C3L-02649 LSCC WGS tissue_normal CPT0204820006 CPT0204820006.WholeGenome.RP-1303.bam 60360077481 BAM aligned CPTAC3 da4fcf94-6522-4bb1-8296-a9a2e74dc434 422a0010138911cbec9e692d74e5c6b6 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.WGS.A.hg38 C3L-02649 LSCC WGS tissue_normal CPT0204820006 9762e18f-229e-44d4-a77d-af8394788f2a_wgs_gdc_realn.bam 88409634597 BAM harmonized CPTAC3 b7bc9a56-3e91-4640-b3e5-70e7a74b0585 2101ad503a82ee377001a93d64a6b037 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.WGS.N C3L-02649 LSCC WGS blood_normal CPT0204930002 CPT0204930002.WholeGenome.RP-1303.bam 59795271705 BAM aligned CPTAC3 b7b4c045-2c2b-4487-827a-7dfbccf8ad26 d25de535b91fa82d2dc0c54c0b86c076 {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02649.WGS.N.hg38 C3L-02649 LSCC WGS blood_normal CPT0204930002 72c299ee-e3f5-424b-b8e1-53670cb12243_wgs_gdc_realn.bam 88133938320 BAM harmonized CPTAC3 58138bab-7fb8-46cd-9447-69b243eb6adb b1106c807ce2bdc4b6872f710e3b4774 {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02649.WGS.T C3L-02649 LSCC WGS tumor CPT0204800006 CPT0204800006.WholeGenome.RP-1303.bam 63256909732 BAM aligned CPTAC3 20e8ad8b-5c21-4a49-9c48-993bb3593684 bd13243dd604a9bd5b78e983e6d1ba38 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor"} -C3L-02649.WGS.T.hg38 C3L-02649 LSCC WGS tumor CPT0204800006 0f3d9c3e-663e-4a22-9700-4d5b0b379643_wgs_gdc_realn.bam 90921931098 BAM harmonized CPTAC3 2321f9d2-017a-4118-90bf-f8d0f14290e4 9af1d0591b616c9f862a897b422ad72e {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor"} -C3L-02649.WXS.A C3L-02649 LSCC WXS tissue_normal CPT0204820006 CPT0204820006.WholeExome.RP-1303.bam 18283695484 BAM aligned CPTAC3 cd194cc7-4f69-4f40-abe5-78e9ad1b5a40 18d6edd48fb60e73bf67f6e92d84b7b4 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.WXS.A.hg38 C3L-02649 LSCC WXS tissue_normal CPT0204820006 9762e18f-229e-44d4-a77d-af8394788f2a_wxs_gdc_realn.bam 25504334477 BAM harmonized CPTAC3 ce291d4a-18da-4291-b2e8-816f648c2cf1 713b4c45e7effd049457d3b90ca5b33e {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02649.WXS.N C3L-02649 LSCC WXS blood_normal CPT0204930002 CPT0204930002.WholeExome.RP-1303.bam 24901049947 BAM aligned CPTAC3 de88e1ce-6c33-42b2-8f33-187a73d8c9b0 b350b53709e7e631af0adfe0baad8535 {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02649.WXS.N.hg38 C3L-02649 LSCC WXS blood_normal CPT0204930002 72c299ee-e3f5-424b-b8e1-53670cb12243_wxs_gdc_realn.bam 33917655167 BAM harmonized CPTAC3 27360f7f-8ce2-4af0-a09e-907e71b0f0f8 ed4733d1c173f35237023c8b7365390e {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal"} -C3L-02649.WXS.T C3L-02649 LSCC WXS tumor CPT0204800006 CPT0204800006.WholeExome.RP-1303.bam 26958742239 BAM aligned CPTAC3 19f7f7be-7600-4e69-b67c-178ce1063689 8920145f6b63010ad9219da856832228 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor"} -C3L-02649.WXS.T.hg38 C3L-02649 LSCC WXS tumor CPT0204800006 0f3d9c3e-663e-4a22-9700-4d5b0b379643_wxs_gdc_realn.bam 37220092398 BAM harmonized CPTAC3 e057c584-c090-4f21-b1a4-f7a93be5076a fe5e24f1c2fb10283fdadd58c82b6222 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor"} -C3L-02650.MethArray.Green.A C3L-02650 LSCC Methylation_Array tissue_normal CPT0205000006 203219650164_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f0160aee-4851-4cd9-aa38-871016e70646 6985875982634df924c5ccd49bf04061 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.MethArray.Green.T C3L-02650 LSCC Methylation_Array tumor CPT0204990006 203219750071_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 36d357b2-fad2-4317-9d98-c283950b8ac3 3ba5f0396bbf48a817b1fe3e1bd9f63e {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor"} -C3L-02650.MethArray.Red.A C3L-02650 LSCC Methylation_Array tissue_normal CPT0205000006 203219650164_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 a0da2049-e911-4831-8348-cb65ba3cd659 82b75524d2b583a3ff2f1a9408a57161 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.MethArray.Red.T C3L-02650 LSCC Methylation_Array tumor CPT0204990006 203219750071_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 7282a44b-f3d3-4fee-9e92-3bd4efe2c72c 5b059f18083062c2dee24a23a30663be {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor"} -C3L-02650.miRNA-Seq.A.hg38 C3L-02650 LSCC miRNA-Seq tissue_normal CPT0205000009 3f535fad-d7f7-44a9-a0c0-895a8d7f6f55_mirnaseq_gdc_realn.bam 163671108 BAM harmonized CPTAC3 cd4236d4-7a0e-4b08-a204-1e7609288a2b 9ff78f58d79907cac82dbfdcbaf035a0 {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.miRNA-Seq.S18_L003_R1.A C3L-02650 LSCC miRNA-Seq tissue_normal CPT0205000009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGGCG_S18_L003_R1_001.unaln.bam 145206307 BAM S18_L003_R1 unaligned CPTAC3 e31536ac-3de2-4f4a-961a-6fb17f52d380 a0b60a8359287f4d3b9ab266e3187fde {"aliquot_tag": "ALQ_1dd5e048", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.miRNA-Seq.S5_L001_R1.T C3L-02650 LSCC miRNA-Seq tumor CPT0204990009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCCCGA_S5_L001_R1_001.unaln.bam 184394999 BAM S5_L001_R1 unaligned CPTAC3 a57dbf80-b523-46ea-926d-94ec0330371a c163122fab60bb074ba8f6dabf35cc96 {"aliquot_tag": "ALQ_91bdd845", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02650.miRNA-Seq.T.hg38 C3L-02650 LSCC miRNA-Seq tumor CPT0204990009 3d60696e-88e5-4e17-a9a4-77938733e970_mirnaseq_gdc_realn.bam 203001188 BAM harmonized CPTAC3 2a741461-c12f-40eb-a163-5880137edae8 9053beb0784663e71487724ab475c605 {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor"} -C3L-02650.RNA-Seq.chimeric.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.chimeric.gdc_realn.bam 69283153 BAM chimeric harmonized CPTAC3 23c17d1c-e901-4951-b106-dd9c9b69c548 911ff1ad2a0cb3f33d98c69fd016df4e {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.RNA-Seq.chimeric.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.chimeric.gdc_realn.bam 165053637 BAM chimeric harmonized CPTAC3 251b0d64-eefc-4bb6-89d8-fa6948949b61 ec4f1a5c4caaa62315a70a4cf0cda1cd {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor"} -C3L-02650.RNA-Seq.genomic.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.genomic.gdc_realn.bam 7653357291 BAM genomic harmonized CPTAC3 114d4bf1-3b30-47a0-b4e6-29ca8b4b7e50 400c339849a29b159779e3740c054eec {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.RNA-Seq.genomic.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.genomic.gdc_realn.bam 9662240135 BAM genomic harmonized CPTAC3 8527f9c9-507c-457a-83c4-03e6fbe73913 cd42538b1e6350444f24018eb777aac9 {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor"} -C3L-02650.RNA-Seq.S8_L002_R1.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R1_001.fastq.gz 4116920239 FASTQ S8_L002_R1 unaligned CPTAC3 52875c96-57a5-4690-bb20-1b52e8b91674 09b0f527660ee055c9fe54957449d7a1 {"aliquot_tag": "ALQ_91bdd845", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02650.RNA-Seq.S8_L002_R2.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R2_001.fastq.gz 4479948519 FASTQ S8_L002_R2 unaligned CPTAC3 4a8c3560-09bb-4ce0-af4a-1a1a720c63d5 42d15aca00a8f65417e0290e863ce794 {"aliquot_tag": "ALQ_91bdd845", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02650.RNA-Seq.S9_L003_R1.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3485391950 FASTQ S9_L003_R1 unaligned CPTAC3 cbe9fab9-c74a-4bf9-9a64-086c18f029a1 b7a4c118310a72b59dc8b07968e9da43 {"aliquot_tag": "ALQ_1dd5e048", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.RNA-Seq.S9_L003_R2.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3830669394 FASTQ S9_L003_R2 unaligned CPTAC3 f5440b74-3438-4f23-b922-126b6c66b89a f4116186c2a9909d9cb208ed4b0509ab {"aliquot_tag": "ALQ_1dd5e048", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.RNA-Seq.transcriptome.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.transcriptome.gdc_realn.bam 8810029528 BAM transcriptome harmonized CPTAC3 857a250e-835f-4a1b-a87a-dda5c4d4d718 49596a8aaf6e42beef2360649fb48efa {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.RNA-Seq.transcriptome.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.transcriptome.gdc_realn.bam 12421021938 BAM transcriptome harmonized CPTAC3 79012fdd-de8a-45a4-a0c1-ecfd80f67c34 4758593e8cf1f6c2b84813b22e8fb73d {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor"} -C3L-02650.WGS.A C3L-02650 LSCC WGS tissue_normal CPT0205000006 CPT0205000006.WholeGenome.RP-1303.bam 53669948388 BAM aligned CPTAC3 55e738ef-777f-4679-b52f-4bfb683056b0 0e3ca683e328069e8a8ecc6df97c84c8 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.WGS.A.hg38 C3L-02650 LSCC WGS tissue_normal CPT0205000006 ad2d8ed8-f6d2-4967-b80e-e9861cab8584_wgs_gdc_realn.bam 77182714644 BAM harmonized CPTAC3 dcc38388-bb3e-42d2-9e09-2042c18b85c9 fb4deda13429f43a6332f37b9c755cc2 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.WGS.N C3L-02650 LSCC WGS blood_normal CPT0205110002 CPT0205110002.WholeGenome.RP-1303.bam 60030241843 BAM aligned CPTAC3 e6c32974-690d-432f-a968-bac2799db4d7 632b81d77428a4eb0553872495fa1f24 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02650.WGS.N.hg38 C3L-02650 LSCC WGS blood_normal CPT0205110002 016f1a26-26fd-47b4-97f2-e1be18215a1a_wgs_gdc_realn.bam 87897608634 BAM harmonized CPTAC3 125bd299-2408-4825-86f0-c7dbd224c1ab 57121fcc123ceed6b87b6c9171798c34 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02650.WGS.T C3L-02650 LSCC WGS tumor CPT0204990006 CPT0204990006.WholeGenome.RP-1303.bam 67871495881 BAM aligned CPTAC3 ee0b9197-eeeb-4350-8c93-8b54bcccbf0a d6652300d123f62f30914b4fc70010e4 {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor"} -C3L-02650.WGS.T.hg38 C3L-02650 LSCC WGS tumor CPT0204990006 4562d6e2-e2a9-4bc2-84c3-69e1d9fd3663_wgs_gdc_realn.bam 100032216458 BAM harmonized CPTAC3 9eb68351-9f2d-4b8b-88fb-5df92e88f30e 718696f3274f1bc870c49ae8fa50f613 {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor"} -C3L-02650.WXS.A C3L-02650 LSCC WXS tissue_normal CPT0205000006 CPT0205000006.WholeExome.RP-1303.bam 23381269718 BAM aligned CPTAC3 23a708db-62b0-444d-9445-d3aef3493ba7 30191c37cd5479801ec5379fe07a291f {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.WXS.A.hg38 C3L-02650 LSCC WXS tissue_normal CPT0205000006 ad2d8ed8-f6d2-4967-b80e-e9861cab8584_wxs_gdc_realn.bam 32271646624 BAM harmonized CPTAC3 ef599122-22fc-42b2-a5b3-662ab7893f37 c2d41e4920eda5501bde5783c5186b56 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02650.WXS.N C3L-02650 LSCC WXS blood_normal CPT0205110002 CPT0205110002.WholeExome.RP-1303.bam 22150976178 BAM aligned CPTAC3 584598c2-da88-42a7-80c0-dcd69c198b82 4fc7b7b0dc40ed1f4f8b4d9fcaa460c8 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02650.WXS.N.hg38 C3L-02650 LSCC WXS blood_normal CPT0205110002 016f1a26-26fd-47b4-97f2-e1be18215a1a_wxs_gdc_realn.bam 30748561655 BAM harmonized CPTAC3 07577c36-658a-4b52-97c4-bf6f818dae04 cd6603901eb25a26b106dccf3d69e5f9 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02650.WXS.T C3L-02650 LSCC WXS tumor CPT0204990006 CPT0204990006.WholeExome.RP-1303.bam 19302203430 BAM aligned CPTAC3 d31d0fe9-500d-4ada-bb2b-4cb98994d150 4adabba21818c6c03fb1a81b515388ac {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor"} -C3L-02650.WXS.T.hg38 C3L-02650 LSCC WXS tumor CPT0204990006 4562d6e2-e2a9-4bc2-84c3-69e1d9fd3663_wxs_gdc_realn.bam 27490845409 BAM harmonized CPTAC3 01931dab-32c0-407b-a8de-b3e2216d257e be2c4c3be8af40aa72a3ee8d0e3c5ca1 {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor"} -C3L-02651.MethArray.Green.A C3L-02651 HNSCC Methylation_Array tissue_normal CPT0242000007 203220070084_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 89938916-0d55-4cce-b211-96a3c1eda571 3ee127f70ab0ea71c64ed827e6ab9e15 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.MethArray.Green.T C3L-02651 HNSCC Methylation_Array tumor CPT0241980007 203220070102_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a394f35e-5796-4402-83ae-cd80168bad8d c735bfa4d9d0f2b6e72a3ac77d46a491 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor"} -C3L-02651.MethArray.Red.A C3L-02651 HNSCC Methylation_Array tissue_normal CPT0242000007 203220070084_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 c41761f0-9ec5-4bc8-b147-0bc934c3c9c1 8d481f47de3aa79203b53963e6932055 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.MethArray.Red.T C3L-02651 HNSCC Methylation_Array tumor CPT0241980007 203220070102_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 f67acd51-e532-424c-a4c0-e0ea0af1e3c9 5ba122aa03bfdd13348cbb6e9f91b279 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor"} -C3L-02651.miRNA-Seq.A.hg38 C3L-02651 HNSCC miRNA-Seq tissue_normal CPT0242000010 e94a8af8-6c7e-484f-88b2-190538c6f049_mirnaseq_gdc_realn.bam 302312131 BAM harmonized CPTAC3 6b79b292-2956-4510-a210-ee12666fd0cf bf43ebe469b43214dcaacc2365ffb359 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.miRNA-Seq.S2_L007_R1.T C3L-02651 HNSCC miRNA-Seq tumor CPT0241980010 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L007_R1_001.unaln.bam 251543485 BAM S2_L007_R1 unaligned CPTAC3 39743bce-af50-476f-b4d2-387dadb9d434 42275f7e251efa0dc99eca4905967b0b {"aliquot_tag": "ALQ_1a68594d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02651.miRNA-Seq.S42_L006_R1.A C3L-02651 HNSCC miRNA-Seq tissue_normal CPT0242000010 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L006_R1_001.unaln.bam 267989091 BAM S42_L006_R1 unaligned CPTAC3 17052f17-e8f2-4488-9f51-2161a9cc1812 1e6da475147de3b5e4fda27e643df98e {"aliquot_tag": "ALQ_3cff59d9", "sample": "S42", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.miRNA-Seq.T.hg38 C3L-02651 HNSCC miRNA-Seq tumor CPT0241980010 83034426-0e21-4d1c-8ee8-372e0acd7eaf_mirnaseq_gdc_realn.bam 288593792 BAM harmonized CPTAC3 a1c7aac7-308a-47e4-9d19-6df3afb8e111 e46ba09dbc981d7685a7c91977adf335 {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor"} -C3L-02651.RNA-Seq.chimeric.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.chimeric.gdc_realn.bam 27787732 BAM chimeric harmonized CPTAC3 f5fb8e9e-cd63-4026-b05d-137b19c61084 a957cc5410f567f8646b0afdfc085386 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.RNA-Seq.chimeric.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.chimeric.gdc_realn.bam 30498989 BAM chimeric harmonized CPTAC3 b075e885-4575-455a-9563-2e22ef4e3927 aad48a2c62f7149518b45241e4ecb9e3 {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor"} -C3L-02651.RNA-Seq.genomic.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.genomic.gdc_realn.bam 7588649779 BAM genomic harmonized CPTAC3 d6de33aa-80e5-4814-84ae-c552d03b1a0b 9f924a6eacabc6c39aa9586dc73749d8 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.RNA-Seq.genomic.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.genomic.gdc_realn.bam 8078627012 BAM genomic harmonized CPTAC3 ed055d42-733a-4882-ac30-a2e7fb1b7286 38716dce1dcc077f5aabc2d4ab5d2089 {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor"} -C3L-02651.RNA-Seq.S18_L005_R1.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R1_001.fastq.gz 3597114940 FASTQ S18_L005_R1 unaligned CPTAC3 2dbd549b-e379-420c-92ed-5d8c178ec879 7e514777a3960cacc5f88300a2dea733 {"aliquot_tag": "ALQ_3cff59d9", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.RNA-Seq.S18_L005_R2.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R2_001.fastq.gz 4047600964 FASTQ S18_L005_R2 unaligned CPTAC3 71d88074-202b-47d6-b1ef-077051148409 c54cab59b4c63207103f17276181bf36 {"aliquot_tag": "ALQ_3cff59d9", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.RNA-Seq.S45_L008_R1.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R1_001.fastq.gz 3956525663 FASTQ S45_L008_R1 unaligned CPTAC3 0b2cd295-9ab3-41f1-b440-125ee4f411ee 2587998656582c4982155174026495f7 {"aliquot_tag": "ALQ_1a68594d", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02651.RNA-Seq.S45_L008_R2.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R2_001.fastq.gz 4352765519 FASTQ S45_L008_R2 unaligned CPTAC3 04efa0a5-6559-4aa7-a4d7-11d25e62f637 0e404acaaff5c90bbb80a5d385ff6e2b {"aliquot_tag": "ALQ_1a68594d", "sample": "S45", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02651.RNA-Seq.transcriptome.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.transcriptome.gdc_realn.bam 11736440951 BAM transcriptome harmonized CPTAC3 b68e0a12-d156-4bed-91cd-36e3c04b5bb1 3385bb19ee0d70ab6488e11b03de5ee7 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.RNA-Seq.transcriptome.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.transcriptome.gdc_realn.bam 10505568768 BAM transcriptome harmonized CPTAC3 868c5078-f8da-4ae2-929f-9a4c8e363b99 10141909fc25608b054b8f0c7f40022c {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor"} -C3L-02651.WGS.N C3L-02651 HNSCC WGS blood_normal CPT0242110002 CPT0242110002.WholeGenome.RP-1303.bam 58233984360 BAM aligned CPTAC3 3f4d420d-549c-4e06-9968-0ee9221b1607 f581eca94623f3f14d71c412ef6d0cda {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02651.WGS.N.hg38 C3L-02651 HNSCC WGS blood_normal CPT0242110002 bef61092-18b4-4faa-9ca2-e2df017cd929_wgs_gdc_realn.bam 86494300984 BAM harmonized CPTAC3 6abbd1e0-f10a-49f1-9355-98d743ad5c8b d6be891c1f2d741e9cc9f2e47e2bd8ec {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02651.WGS.T C3L-02651 HNSCC WGS tumor CPT0241980007 CPT0241980007.WholeGenome.RP-1303.bam 60218801352 BAM aligned CPTAC3 4bbcc793-13e1-4c05-8333-5abfd18c5ec7 9577c7f6fd9cc3703b7640ddd87608e8 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor"} -C3L-02651.WGS.T.hg38 C3L-02651 HNSCC WGS tumor CPT0241980007 b8885ef7-8413-4a1c-82fd-c9f586ff8b1d_wgs_gdc_realn.bam 88629628251 BAM harmonized CPTAC3 aa35b4bf-09f8-438a-85a2-660ecf36df41 041736fc14afddbef09d506425a9a3a5 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor"} -C3L-02651.WXS.A C3L-02651 HNSCC WXS tissue_normal CPT0242000007 CPT0242000007.WholeExome.RP-1303.bam 22219582797 BAM aligned CPTAC3 183df6dd-c58a-416a-b03a-7f2be965d2b8 685c9ed74a7fab37160d66e60e27a1b8 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.WXS.A.hg38 C3L-02651 HNSCC WXS tissue_normal CPT0242000007 bc6b549b-0c9b-4af1-9e7e-efb98842ba07_wxs_gdc_realn.bam 30262206275 BAM harmonized CPTAC3 e63db54f-51f0-4ad7-b16a-b1eccf907107 df13f0a8a10b672e6374d4170cb8c083 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02651.WXS.N C3L-02651 HNSCC WXS blood_normal CPT0242110002 CPT0242110002.WholeExome.RP-1303.bam 20993505724 BAM aligned CPTAC3 e3e2ff93-96a6-42f4-ab1b-ca95d58551ce 56f970db4a5500cb7292e469de9e3b62 {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02651.WXS.N.hg38 C3L-02651 HNSCC WXS blood_normal CPT0242110002 bef61092-18b4-4faa-9ca2-e2df017cd929_wxs_gdc_realn.bam 29263848723 BAM harmonized CPTAC3 31310f51-6711-494c-8ed4-f1ff18b29f3d e1a927249a306d856a72fa6c672a7fc7 {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal"} -C3L-02651.WXS.T C3L-02651 HNSCC WXS tumor CPT0241980007 CPT0241980007.WholeExome.RP-1303.bam 24518975713 BAM aligned CPTAC3 aaed60ae-bd17-4ea5-9f07-7b1d970863f0 b087375f33a38f1df5a8bb653fd57d79 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor"} -C3L-02651.WXS.T.hg38 C3L-02651 HNSCC WXS tumor CPT0241980007 b8885ef7-8413-4a1c-82fd-c9f586ff8b1d_wxs_gdc_realn.bam 34002342143 BAM harmonized CPTAC3 6c5876d9-4db8-4ff0-8558-21cdc1bf903b 5915a4e4b324f8938468d3e92d33868e {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor"} -C3L-02654.MethArray.Green.A C3L-02654 LUAD Methylation_Array tissue_normal CPT0205180007 203561620072_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 25066033-1757-4d0f-9212-9736124266ff 2b592ff91d986d4ca0fc78b6d3c5788e {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.MethArray.Green.T C3L-02654 LUAD Methylation_Array tumor CPT0205140006 203273630048_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8d2eda67-b795-4a7c-bf43-f226926c897a 48072bac6cad1f728d8c9b63633050c6 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor"} -C3L-02654.MethArray.Red.A C3L-02654 LUAD Methylation_Array tissue_normal CPT0205180007 203561620072_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 54091028-9b0c-4045-877a-ef8f3f2c9b95 aa566919e615b359926e0114d798594a {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.MethArray.Red.T C3L-02654 LUAD Methylation_Array tumor CPT0205140006 203273630048_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 5ebf502b-77c9-4923-bfc4-cafd6965247b a92f220fcfdd1d09c9a3acec9e08a720 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor"} -C3L-02654.miRNA-Seq.A.hg38 C3L-02654 LUAD miRNA-Seq tissue_normal CPT0205180010 6885a580-72c8-4a42-a8d9-aa3dda6f7fd7_mirnaseq_gdc_realn.bam 165138044 BAM harmonized CPTAC3 87e5f23c-1651-4e3e-9cab-edf21c8cd464 425e97e7c31b412b6edc91d729fa4948 {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.miRNA-Seq.S2_L007_R1.T C3L-02654 LUAD miRNA-Seq tumor CPT0205140009 190722_UNC31-K00269_0234_AH7VGTBBXY_GCCAAT_S2_L007_R1_001.unaln.bam 251681842 BAM S2_L007_R1 unaligned CPTAC3 027a7061-f8ad-469d-9fbc-5ff88022e9a6 ee78ac2b93a3ef35c4c05833b84455e2 {"aliquot_tag": "ALQ_2309952d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02654.miRNA-Seq.S45_L006_R1.A C3L-02654 LUAD miRNA-Seq tissue_normal CPT0205180010 190722_UNC31-K00269_0234_AH7VGTBBXY_CAAAAG_S45_L006_R1_001.unaln.bam 144910672 BAM S45_L006_R1 unaligned CPTAC3 1b7347c7-3b23-4604-9621-fe811b1c9969 6e9d1f26ea63a541ba62d5fc8c766233 {"aliquot_tag": "ALQ_863ef1c9", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.miRNA-Seq.T.hg38 C3L-02654 LUAD miRNA-Seq tumor CPT0205140009 5dc44c93-5855-4246-934b-6238801ef4ed_mirnaseq_gdc_realn.bam 282623342 BAM harmonized CPTAC3 57486fd6-b23f-4453-9b38-ab50f7548010 47c6fda835fb15c6de2f8fa637fe3400 {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor"} -C3L-02654.RNA-Seq.chimeric.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.chimeric.gdc_realn.bam 25962794 BAM chimeric harmonized CPTAC3 e43ef4cb-57a5-4e6b-8601-f9d194a11228 c827e4aaa271717407b7a70cd427c31a {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.RNA-Seq.chimeric.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.chimeric.gdc_realn.bam 38720916 BAM chimeric harmonized CPTAC3 67bbc7df-d2c2-4501-aefb-70e19271c208 23b297e23ad6c7c04adf2d4b758f53d5 {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor"} -C3L-02654.RNA-Seq.genomic.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.genomic.gdc_realn.bam 9271115226 BAM genomic harmonized CPTAC3 40c7b98c-00e3-4aa1-8fd1-a0419218ba4b 4a454d9a497a37934d464569a1bf077d {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.RNA-Seq.genomic.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.genomic.gdc_realn.bam 9529726901 BAM genomic harmonized CPTAC3 493e521e-192a-4bb4-8021-19dd6b558b63 d757dedd4d6149568e0708ed6167f60e {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor"} -C3L-02654.RNA-Seq.S18_L005_R1.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R1_001.fastq.gz 3598529018 FASTQ S18_L005_R1 unaligned CPTAC3 bfa21ea5-8ebb-468a-9a8d-08281ddfa934 8375c6eb81d5f09305f4585a19d0c56a {"aliquot_tag": "ALQ_863ef1c9", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.RNA-Seq.S18_L005_R2.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R2_001.fastq.gz 3973847597 FASTQ S18_L005_R2 unaligned CPTAC3 23023be8-439d-4de3-96f7-29739cf6c500 f968056ea9fb1d37ebc8a01491709304 {"aliquot_tag": "ALQ_863ef1c9", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.RNA-Seq.S28_L007_R1.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 4248129777 FASTQ S28_L007_R1 unaligned CPTAC3 09204ce0-68b2-469b-bdf0-f2300ffb5261 ba6e450707eec4b1256b9df941183311 {"aliquot_tag": "ALQ_2309952d", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02654.RNA-Seq.S28_L007_R2.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4795234915 FASTQ S28_L007_R2 unaligned CPTAC3 6f2d50f6-8e83-4113-92c1-4a88dd64abc2 c5f4687998977c8ea786f038a7cb8672 {"aliquot_tag": "ALQ_2309952d", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02654.RNA-Seq.transcriptome.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.transcriptome.gdc_realn.bam 7231384065 BAM transcriptome harmonized CPTAC3 3a23cc25-5812-4005-b298-fe7cc5834a9a 4e2986b25d88b4d804a066a90d9cfbcb {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.RNA-Seq.transcriptome.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.transcriptome.gdc_realn.bam 10989097460 BAM transcriptome harmonized CPTAC3 8dd2f548-69d8-4497-a3af-95bff0c7bae6 84c5a59b36d1c88b6079101c571f11fd {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor"} -C3L-02654.WGS.N C3L-02654 LUAD WGS blood_normal CPT0205290002 CPT0205290002.WholeGenome.RP-1303.bam 85436004676 BAM aligned CPTAC3 42067b50-11cb-4bc3-b22e-4c435f837759 0c46b64e4b848ce24fc08f6fdf89d6e8 {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02654.WGS.N.hg38 C3L-02654 LUAD WGS blood_normal CPT0205290002 1d5f98ff-08ed-42b4-8860-a001c6daf5bc_wgs_gdc_realn.bam 128662443074 BAM harmonized CPTAC3 db223147-200e-40e3-829e-7c0a7764e117 a6bbfd148a2658c31a15a78ceb48d49c {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02654.WGS.T C3L-02654 LUAD WGS tumor CPT0205140006 CPT0205140006.WholeGenome.RP-1303.bam 90000922576 BAM aligned CPTAC3 578c8a82-e0d2-40df-9c8c-96f062bbbe4d 982d89d84973a1d5975f6ee307330d2b {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor"} -C3L-02654.WGS.T.hg38 C3L-02654 LUAD WGS tumor CPT0205140006 aa3dd3eb-75de-489f-bece-cf760cdbbf1f_wgs_gdc_realn.bam 131093375590 BAM harmonized CPTAC3 f8ad9c33-028c-417e-8a4c-c556cdb01b36 5970fa08080e1f27d19f4bd9ac1b5b13 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor"} -C3L-02654.WXS.A C3L-02654 LUAD WXS tissue_normal CPT0205180007 CPT0205180007.WholeExome.RP-1303.bam 42472605145 BAM aligned CPTAC3 0fdc69e8-63d1-41d6-bd0f-392552658a8a 9d06eff2f4226e7eabc3510170c6f12d {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.WXS.A.hg38 C3L-02654 LUAD WXS tissue_normal CPT0205180007 89c3681e-9002-4026-9a2c-9f955c714643_wxs_gdc_realn.bam 58069615119 BAM harmonized CPTAC3 8cd296e1-2fd9-4f7a-bba4-67d6bdebcf41 3c22863028d516189859a86030346622 {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02654.WXS.N C3L-02654 LUAD WXS blood_normal CPT0205290002 CPT0205290002.WholeExome.RP-1303.bam 29624002337 BAM aligned CPTAC3 6a69baaf-ec1e-4f46-942e-6df88ad1dff4 336d54045b91ec952bfbbe33cfcc9c8a {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02654.WXS.N.hg38 C3L-02654 LUAD WXS blood_normal CPT0205290002 1d5f98ff-08ed-42b4-8860-a001c6daf5bc_wxs_gdc_realn.bam 40769095618 BAM harmonized CPTAC3 cfcbfce1-9939-4fa6-bf02-758c2c705652 5067ab5c317cf3159480da41ab8aed56 {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02654.WXS.T C3L-02654 LUAD WXS tumor CPT0205140006 CPT0205140006.WholeExome.RP-1303.bam 26036032796 BAM aligned CPTAC3 89aa50d9-20b2-43dc-a3bc-cc84fc018e2d 2fe4b925973eccb166708ad92a941a84 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor"} -C3L-02654.WXS.T.hg38 C3L-02654 LUAD WXS tumor CPT0205140006 aa3dd3eb-75de-489f-bece-cf760cdbbf1f_wxs_gdc_realn.bam 36342998223 BAM harmonized CPTAC3 1b9fbe1c-a3d7-4780-bd7d-0f42c084a445 00a05eac8a470ac40e0c5516c1e2d870 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor"} -C3L-02660.MethArray.Green.A C3L-02660 LSCC Methylation_Array tissue_normal CPT0202740006 203219760081_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 0087ea19-9af3-494b-8491-10a9f1734ae5 b466fd124e1f9c6c1be400b4d52a54da {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.MethArray.Green.T C3L-02660 LSCC Methylation_Array tumor CPT0202720006 203219650006_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0bfd8f83-8ec7-408b-80fb-9709a4dc8764 51a4cf3cf7bb1176493f0473f8456da9 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor"} -C3L-02660.MethArray.Red.A C3L-02660 LSCC Methylation_Array tissue_normal CPT0202740006 203219760081_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 54c96aad-d3f2-4457-a788-891a8e257e12 601d3445a311c6dee0967941e311ddb9 {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.MethArray.Red.T C3L-02660 LSCC Methylation_Array tumor CPT0202720006 203219650006_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 05ba3f94-c8f5-41e7-81a3-722cf7afb721 d8e58ca92e70e81ea787edb1f40df199 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor"} -C3L-02660.miRNA-Seq.A.hg38 C3L-02660 LSCC miRNA-Seq tissue_normal CPT0202740009 1ba03e14-c77b-4acb-856f-c75c38328049_mirnaseq_gdc_realn.bam 408659981 BAM harmonized CPTAC3 6f047913-f118-41d9-b756-832816a7fc45 e8952a0022fac6eb2795c5f30de1e198 {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.miRNA-Seq.S11_L001_R1.T C3L-02660 LSCC miRNA-Seq tumor CPT0202720009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTCAGA_S11_L001_R1_001.unaln.bam 272289181 BAM S11_L001_R1 unaligned CPTAC3 3a1e2ad6-5f8c-4d9e-9d89-95e477a261ef 5a0358af0e9b0b9f5b52febfd5b51f67 {"aliquot_tag": "ALQ_bfb7bd1e", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02660.miRNA-Seq.S44_L004_R1.A C3L-02660 LSCC miRNA-Seq tissue_normal CPT0202740009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACAGTG_S44_L004_R1_001.unaln.bam 368454658 BAM S44_L004_R1 unaligned CPTAC3 ad7eb074-1035-4aee-a170-7a880cdb1234 20c1dce079a9a9427d58b8bd48a18b64 {"aliquot_tag": "ALQ_30f748be", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.miRNA-Seq.T.hg38 C3L-02660 LSCC miRNA-Seq tumor CPT0202720009 5c4eba16-0144-40b6-aa31-d4068ee7f27b_mirnaseq_gdc_realn.bam 297837753 BAM harmonized CPTAC3 35646274-2047-45ee-8889-d106da89bd80 aa20e5129607572cbf861bc26edda2dd {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor"} -C3L-02660.RNA-Seq.chimeric.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.chimeric.gdc_realn.bam 160099939 BAM chimeric harmonized CPTAC3 b0ce1b09-8324-4f04-a7e2-dd2f5e4e6aca e04e7d56ccb3097d1ba673de119d3ad8 {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.RNA-Seq.chimeric.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.chimeric.gdc_realn.bam 73171391 BAM chimeric harmonized CPTAC3 b72bbc26-1fd1-4d52-b00c-c655d1906f97 62880cbe9626778a885da6a7b00db798 {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor"} -C3L-02660.RNA-Seq.genomic.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.genomic.gdc_realn.bam 7531180273 BAM genomic harmonized CPTAC3 5bd290f4-735b-46d3-ae07-6bbf52965b1b 0df619c0264f3e5a1cc653f1f9fdb0ed {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.RNA-Seq.genomic.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.genomic.gdc_realn.bam 8320047997 BAM genomic harmonized CPTAC3 c580100d-b38c-4216-b0d9-58af3e1c180c f9dac4e0d6b3b3b7bc8de1d2897a34a4 {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor"} -C3L-02660.RNA-Seq.S5_L008_R1.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3463798613 FASTQ S5_L008_R1 unaligned CPTAC3 4b4f25d4-86f3-42bd-a24c-8b6ba4444114 8d9adc9411ab8393978573111f9ebb64 {"aliquot_tag": "ALQ_30f748be", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.RNA-Seq.S5_L008_R2.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3906929544 FASTQ S5_L008_R2 unaligned CPTAC3 c1aff8d7-7509-42cb-8576-7b78419db74c 59e70815a1f2eb221d85f71de348b590 {"aliquot_tag": "ALQ_30f748be", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.RNA-Seq.S8_L008_R1.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R1_001.fastq.gz 3261157949 FASTQ S8_L008_R1 unaligned CPTAC3 74a02796-23b8-4058-8ad9-5e7d0a293bca aaff9c3033633415e26dbbd023f8b1fb {"aliquot_tag": "ALQ_bfb7bd1e", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02660.RNA-Seq.S8_L008_R2.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R2_001.fastq.gz 3288875186 FASTQ S8_L008_R2 unaligned CPTAC3 8f915fb8-ea14-41e0-9132-7074288407a4 bf5324e2c02c89705317010b66c4d5cb {"aliquot_tag": "ALQ_bfb7bd1e", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02660.RNA-Seq.transcriptome.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.transcriptome.gdc_realn.bam 8266345122 BAM transcriptome harmonized CPTAC3 103449ae-6898-45dc-bc38-d4db41b159b2 f8e73a4bb7e04fab35ad106f4411a295 {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.RNA-Seq.transcriptome.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.transcriptome.gdc_realn.bam 7882206706 BAM transcriptome harmonized CPTAC3 afc2051f-6692-4afa-8459-f4b527fbe247 85c3c3b68bee70440d83e8c0e8966c34 {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor"} -C3L-02660.WGS.A C3L-02660 LSCC WGS tissue_normal CPT0202740006 CPT0202740006.WholeGenome.RP-1303.bam 59434989618 BAM aligned CPTAC3 70cbd5d8-5b90-4783-ade5-3a7e04b70898 d6ebd8527714b9e6e1214ab8828eb601 {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.WGS.A.hg38 C3L-02660 LSCC WGS tissue_normal CPT0202740006 ac3ceb98-8878-4f7e-bedf-e4c65aa39b49_wgs_gdc_realn.bam 85661384855 BAM harmonized CPTAC3 b3588cb3-b835-423f-865d-506fe829e28d 1c57cb5246dbae599e20700b8d9733ab {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.WGS.N C3L-02660 LSCC WGS blood_normal CPT0202840002 CPT0202840002.WholeGenome.RP-1303.bam 64383391307 BAM aligned CPTAC3 b8aaaef9-9cda-4646-a3ca-b46004523f8c 6a48e1ca88017c138de0bd774894e13a {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02660.WGS.N.hg38 C3L-02660 LSCC WGS blood_normal CPT0202840002 24b56530-504e-4423-a833-238e49cb0d18_wgs_gdc_realn.bam 95035411940 BAM harmonized CPTAC3 6ec09acd-1d07-4040-8d36-c147a3f86972 c6025fabc212e0a0afd77ed34bc6bea6 {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02660.WGS.T C3L-02660 LSCC WGS tumor CPT0202720006 CPT0202720006.WholeGenome.RP-1303.bam 58903357664 BAM aligned CPTAC3 9ca540d5-ca4b-4b23-8f8d-213871c84c06 32b834bd4691c0722f222f6531b5733c {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor"} -C3L-02660.WGS.T.hg38 C3L-02660 LSCC WGS tumor CPT0202720006 de5ff6c5-79fc-4c44-9d16-79b73e2e8e06_wgs_gdc_realn.bam 85038312517 BAM harmonized CPTAC3 13fb6720-c0ec-4762-b4d9-fe0d3a1774fe eb96b52123a2bd58cb9d33ba8ea1ca98 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor"} -C3L-02660.WXS.A C3L-02660 LSCC WXS tissue_normal CPT0202740006 CPT0202740006.WholeExome.RP-1303.bam 22981205746 BAM aligned CPTAC3 bb12921a-e949-4916-84ea-6a78129138a1 9d5c2ce9d4aaa93db55a076a60fd9c3f {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.WXS.A.hg38 C3L-02660 LSCC WXS tissue_normal CPT0202740006 ac3ceb98-8878-4f7e-bedf-e4c65aa39b49_wxs_gdc_realn.bam 31357280751 BAM harmonized CPTAC3 063dad54-9bd8-4a5d-b9e5-773941d37583 383ab35e84348d0e46affa00bce3c54d {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02660.WXS.N C3L-02660 LSCC WXS blood_normal CPT0202840002 CPT0202840002.WholeExome.RP-1303.bam 27366217719 BAM aligned CPTAC3 d7e3e912-3cc1-46a1-87c7-d836d252f614 3668ee857aa4833fd8eb5132663f22b7 {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02660.WXS.N.hg38 C3L-02660 LSCC WXS blood_normal CPT0202840002 24b56530-504e-4423-a833-238e49cb0d18_wxs_gdc_realn.bam 36908150834 BAM harmonized CPTAC3 8123ed94-befe-4a1f-9cc1-234fbd1f8504 b14d1906e95bbcd2f4548460be51b33e {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal"} -C3L-02660.WXS.T C3L-02660 LSCC WXS tumor CPT0202720006 CPT0202720006.WholeExome.RP-1303.bam 19710001885 BAM aligned CPTAC3 85def9ab-2c1e-4979-a3aa-3f90fb88d30c ccd9383fb94d4f9b891177aca88ccaa5 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor"} -C3L-02660.WXS.T.hg38 C3L-02660 LSCC WXS tumor CPT0202720006 de5ff6c5-79fc-4c44-9d16-79b73e2e8e06_wxs_gdc_realn.bam 27523946363 BAM harmonized CPTAC3 fdec05f0-1ba5-4b72-8419-dfbe26275b9f 784273f0c425c490e26117fca46928a8 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor"} -C3L-02661.MethArray.Green.A C3L-02661 LUAD Methylation_Array tissue_normal CPT0192430006 203028200100_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5c2edd9e-380a-4cc1-b0ba-bea67e4160a0 efda2c14ab38db2e1a458cdfb39c44a7 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.MethArray.Green.T C3L-02661 LUAD Methylation_Array tumor CPT0192380006 203219670054_R05C01_Grn.idat 13676232 IDAT Green NA CPTAC3 3a97330d-048f-4c8a-ac43-7546e49eca58 e65d5750d56e113f9b3267900c29479c {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor"} -C3L-02661.MethArray.Red.A C3L-02661 LUAD Methylation_Array tissue_normal CPT0192430006 203028200100_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 2c163ac6-2662-48de-96f8-658b2d5fc976 8aa6f5986436dcf162aa4527a2464cfe {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.MethArray.Red.T C3L-02661 LUAD Methylation_Array tumor CPT0192380006 203219670054_R05C01_Red.idat 13676232 IDAT Red NA CPTAC3 c6c0651d-3072-4a65-921c-018805a8419a 331180345d23f476a8f983ca3cc1e9b0 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor"} -C3L-02661.miRNA-Seq.A.hg38 C3L-02661 LUAD miRNA-Seq tissue_normal CPT0192430009 7ff7662e-351f-4a1d-aa7a-57794a7698f6_mirnaseq_gdc_realn.bam 300772175 BAM harmonized CPTAC3 d92323d6-e76a-421b-a61d-9f81e1f704df 17ba014ce1f2a81ec77cb9460ba15814 {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.miRNA-Seq.S13_L006_R1.A C3L-02661 LUAD miRNA-Seq tissue_normal CPT0192430009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L006_R1_001.unaln.bam 274411550 BAM S13_L006_R1 unaligned CPTAC3 e4ef7368-68e9-4e75-b5f7-6fa044157db4 7cdce59a175002616c9394085b35f092 {"aliquot_tag": "ALQ_2281c1ee", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.miRNA-Seq.S26_L006_R1.T C3L-02661 LUAD miRNA-Seq tumor CPT0192380009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L006_R1_001.unaln.bam 220890246 BAM S26_L006_R1 unaligned CPTAC3 a1b8bee1-ed82-491c-8298-76bcd16dee27 7192dee76fef34464e6634d81cddf269 {"aliquot_tag": "ALQ_4854c047", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02661.miRNA-Seq.T.hg38 C3L-02661 LUAD miRNA-Seq tumor CPT0192380009 946d6792-bf86-4716-bbcc-b59dc9203aaf_mirnaseq_gdc_realn.bam 241394137 BAM harmonized CPTAC3 aa9542d6-4762-4ef1-b255-c357f296c3c7 2a45885e9686e46bddca80c143951bc6 {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor"} -C3L-02661.RNA-Seq.chimeric.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.chimeric.gdc_realn.bam 44920469 BAM chimeric harmonized CPTAC3 721f0aec-9c8a-4ebe-89c1-53bb9e500085 22a431f382e4a28ed4bba9568fcff7c5 {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.RNA-Seq.chimeric.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.chimeric.gdc_realn.bam 49024073 BAM chimeric harmonized CPTAC3 d73a7e35-639e-4488-9cfb-23bb39d9e274 c113e5275d7e16e3d50acc1851f7cd3a {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor"} -C3L-02661.RNA-Seq.genomic.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.genomic.gdc_realn.bam 8358143794 BAM genomic harmonized CPTAC3 c2bb8f7e-81f4-492b-b7d8-ce50d82c63e2 abfc5489050812e2c5a6118a1c30c851 {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.RNA-Seq.genomic.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.genomic.gdc_realn.bam 10032728459 BAM genomic harmonized CPTAC3 fef2b70d-253f-4ce4-87dc-5af30c291f37 52cf89c46810ccd1e3967e4d98a89511 {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor"} -C3L-02661.RNA-Seq.S13_L004_R1.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R1_001.fastq.gz 3818022004 FASTQ S13_L004_R1 unaligned CPTAC3 29105d2e-da1a-4b01-a43d-978652b480da 87e1ab539f999af58880ed7e5f57d6a7 {"aliquot_tag": "ALQ_2281c1ee", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.RNA-Seq.S13_L004_R2.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R2_001.fastq.gz 4231112363 FASTQ S13_L004_R2 unaligned CPTAC3 0a73c3fd-b91a-4933-b213-bcd787861324 d3086a1baba82d0f1b172fad585ae046 {"aliquot_tag": "ALQ_2281c1ee", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.RNA-Seq.S1_L007_R1.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R1_001.fastq.gz 4594708120 FASTQ S1_L007_R1 unaligned CPTAC3 8bf8131a-1bfd-420a-a617-29cf7cd5595a 2a741b496fed6995b6756f39cb32c08d {"aliquot_tag": "ALQ_4854c047", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02661.RNA-Seq.S1_L007_R2.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R2_001.fastq.gz 5042475468 FASTQ S1_L007_R2 unaligned CPTAC3 dd066b3b-d5c8-45c4-a854-221d47dae8f2 751de8299d1dc0f23312ccf958108889 {"aliquot_tag": "ALQ_4854c047", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02661.RNA-Seq.transcriptome.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.transcriptome.gdc_realn.bam 9543528959 BAM transcriptome harmonized CPTAC3 ec4edf51-d90f-43de-b521-ddb99f233076 a58b0ca83ffdc075ca397677ef3ed00c {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.RNA-Seq.transcriptome.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.transcriptome.gdc_realn.bam 12057220734 BAM transcriptome harmonized CPTAC3 0bc59df5-71c7-4874-8098-27a1263355c2 acfc732e03cefed283ee3e18c5dc8693 {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor"} -C3L-02661.WGS.A C3L-02661 LUAD WGS tissue_normal CPT0192430006 CPT0192430006.WholeGenome.RP-1303.bam 64125734112 BAM aligned CPTAC3 d3ba9ba3-46e6-4bec-a731-6f5df4ac3761 47c726dd3058731c5d9d023af34c0369 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.WGS.A.hg38 C3L-02661 LUAD WGS tissue_normal CPT0192430006 1fc581d1-064b-4142-805d-4567983c81b8_wgs_gdc_realn.bam 92448623248 BAM harmonized CPTAC3 7355c31a-2f71-43a8-98d8-a228241365de fb3a56e913c59bef85d20588a27d4791 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.WGS.N C3L-02661 LUAD WGS blood_normal CPT0192520002 CPT0192520002.WholeGenome.RP-1303.bam 53351426033 BAM aligned CPTAC3 5447f1db-7a65-4c02-a105-8ec5c9ded524 7cdfaa5c341f88ac2decd8d2b46e2805 {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal"} -C3L-02661.WGS.N.hg38 C3L-02661 LUAD WGS blood_normal CPT0192520002 b80dc241-e5cc-4d1b-8322-4e0a0258717a_wgs_gdc_realn.bam 78295912022 BAM harmonized CPTAC3 f719b72d-fa85-4e32-9adc-63e4c2721cd5 ee26d9fdb5993519f79cc37182ed05af {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal"} -C3L-02661.WGS.T C3L-02661 LUAD WGS tumor CPT0192380006 CPT0192380006.WholeGenome.RP-1303.bam 61719442900 BAM aligned CPTAC3 ab99dc5b-fe50-4579-bfc8-63db17b0a2ef 3a33a3e0eda918d491f67875e3acbf36 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor"} -C3L-02661.WGS.T.hg38 C3L-02661 LUAD WGS tumor CPT0192380006 b1b5326f-11ac-4f1e-86b8-da1238672b6e_wgs_gdc_realn.bam 90521274557 BAM harmonized CPTAC3 f24991a2-0ecb-4e5a-8652-4c5beee7e947 a77ce16f8b143c0a0b2622ced7698acc {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor"} -C3L-02661.WXS.A C3L-02661 LUAD WXS tissue_normal CPT0192430006 CPT0192430006.WholeExome.RP-1303.bam 20547518369 BAM aligned CPTAC3 e0642b6b-f751-4345-877a-33d55c6f9f5b 53674ee979bbbd1d147deeba74776294 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.WXS.A.hg38 C3L-02661 LUAD WXS tissue_normal CPT0192430006 1fc581d1-064b-4142-805d-4567983c81b8_wxs_gdc_realn.bam 28456350582 BAM harmonized CPTAC3 0c66fd21-1350-4e46-a47b-43399d2fa9bf 643e8615dafc694823697d25e5a89f5f {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02661.WXS.N C3L-02661 LUAD WXS blood_normal CPT0192520002 CPT0192520002.WholeExome.RP-1303.bam 25521113234 BAM aligned CPTAC3 7dbfd238-0901-48be-a9a3-08bf97b69f91 e766c2d52bbe18b3f904a6369bb9d8d5 {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal"} -C3L-02661.WXS.N.hg38 C3L-02661 LUAD WXS blood_normal CPT0192520002 b80dc241-e5cc-4d1b-8322-4e0a0258717a_wxs_gdc_realn.bam 34942219444 BAM harmonized CPTAC3 5b8a86a3-1882-4fe3-973a-b087fd0a1d81 a340647eedeff59d9adf8ca6f7b5f6ce {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal"} -C3L-02661.WXS.T C3L-02661 LUAD WXS tumor CPT0192380006 CPT0192380006.WholeExome.RP-1303.bam 24406776690 BAM aligned CPTAC3 bd64ab8b-45c1-4899-82e9-2067ab77c9cd 65faea6f317e051ab4a97f7f56246216 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor"} -C3L-02661.WXS.T.hg38 C3L-02661 LUAD WXS tumor CPT0192380006 b1b5326f-11ac-4f1e-86b8-da1238672b6e_wxs_gdc_realn.bam 34693138193 BAM harmonized CPTAC3 0a9f0c8c-1d97-45e2-9676-8e950999659d dd98cfde4ab2e59b27f8e770bb131512 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor"} -C3L-02662.MethArray.Green.T C3L-02662 GBM Methylation_Array tumor CPT0267260007 204367470124_R01C01_Grn.idat 13677882 IDAT Green NA CPTAC3 82c8ca56-2684-4765-a578-2e7bf88e7092 ed1e18fa322864ac07569922da31597f {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor"} -C3L-02662.MethArray.Red.T C3L-02662 GBM Methylation_Array tumor CPT0267260007 204367470124_R01C01_Red.idat 13677882 IDAT Red NA CPTAC3 a2a1c65f-dfd5-4e80-b324-e61a9246ef79 db96241568b6752e83c89baf92c05d84 {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor"} -C3L-02662.miRNA-Seq.S3_L001_R1.T C3L-02662 GBM miRNA-Seq tumor CPT0267260010 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L001_R1_001.unaln.bam 199751137 BAM S3_L001_R1 unaligned CPTAC3 8928ea06-faf4-403a-960b-44a8c1eb2bf9 ca0f2e8b53be1378be1064f35966981b {"aliquot_tag": "ALQ_ee6a25a8", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02662.miRNA-Seq.T.hg38 C3L-02662 GBM miRNA-Seq tumor CPT0267260010 f7cda4c0-bf0f-46f1-8e41-dd38276704d2_mirnaseq_gdc_realn.bam 222751978 BAM harmonized CPTAC3 901bda8c-9af1-4cdc-b9ad-dc3b87519c1c 8565473034ce56ff219f14d7babc860b {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor"} -C3L-02662.RNA-Seq.chimeric.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.chimeric.gdc_realn.bam 19895747 BAM chimeric harmonized CPTAC3 4c853ed7-08f4-4596-9418-cc0a1c38d04f 46c6b5e869429c0ddb94dbf3b4ca7a0c {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor"} -C3L-02662.RNA-Seq.genomic.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.genomic.gdc_realn.bam 5823690031 BAM genomic harmonized CPTAC3 a25b2b99-7128-485e-82b6-9a07c91e6226 9570a75a41a1eea0e9440bb76ba5173b {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor"} -C3L-02662.RNA-Seq.S22_L006_R1.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R1_001.fastq.gz 2651283628 FASTQ S22_L006_R1 unaligned CPTAC3 356afdb9-db72-4527-92b6-80619daf6746 d26d68a575049099ea1e7251c56d81ff {"aliquot_tag": "ALQ_ee6a25a8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02662.RNA-Seq.S22_L006_R2.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ S22_L006_R2 unaligned CPTAC3 45e95154-6823-4405-a610-9a42d4bc5f10 af9dca0e728ed9683ff8bceaf129692c {"aliquot_tag": "ALQ_ee6a25a8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02662.RNA-Seq.transcriptome.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.transcriptome.gdc_realn.bam 6831316217 BAM transcriptome harmonized CPTAC3 45667f60-dae5-434e-be74-b644d8b705f3 d0505781e8ecf7e66e24d591e0fefd2b {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor"} -C3L-02662.WGS.N C3L-02662 GBM WGS blood_normal CPT0267300002 CPT0267300002.WholeGenome.RP-2158.bam 27090249079 BAM aligned CPTAC3 6cc40b60-9b11-429c-8f10-f679c36a10fc ff6b361feffc7b1144fd26ce74ede696 {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02662.WGS.N.hg38 C3L-02662 GBM WGS blood_normal CPT0267300002 ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wgs_gdc_realn.bam 81374312262 BAM harmonized CPTAC3 bfb3b98e-daac-48dc-bd69-85c8886a45c5 2a79a68ab2ae20bc1d9410c7c80c18d1 {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02662.WGS.T C3L-02662 GBM WGS tumor CPT0267260007 CPT0267260007.WholeGenome.RP-2158.bam 27579170879 BAM aligned CPTAC3 8af676a8-afcb-4679-81a6-934725ebdbdb 3b5ecf88bcf0f0be09c67e0cdbe66c37 {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor"} -C3L-02662.WGS.T.hg38 C3L-02662 GBM WGS tumor CPT0267260007 48a74119-daeb-4577-9c10-649d7d71f72e_wgs_gdc_realn.bam 81794446548 BAM harmonized CPTAC3 c3462153-48c2-4ced-9b84-4179b0f08cb3 41513633e8fcfeb10817e83e3e2eb66f {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor"} -C3L-02662.WXS.N C3L-02662 GBM WXS blood_normal CPT0267300002 CPT0267300002.WholeExome.RP-1303.bam 32172440712 BAM aligned CPTAC3 11e768f6-702e-4217-9405-d7e2e8b3549a 8e18f4ac617a324a85f0ec82e50538a5 {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02662.WXS.N.hg38 C3L-02662 GBM WXS blood_normal CPT0267300002 ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wxs_gdc_realn.bam 43541229598 BAM harmonized CPTAC3 483ee610-f803-4aa9-953c-6d1a197e0e8e 91de3c54c23bfc369782f0ddf2e8c46f {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal"} -C3L-02662.WXS.T C3L-02662 GBM WXS tumor CPT0267260007 CPT0267260007.WholeExome.RP-1303.bam 18842860859 BAM aligned CPTAC3 548aa728-a7c4-4fd3-b9a1-56debfc0fb08 a60030039eab8e53bd06465c9a3101b4 {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor"} -C3L-02662.WXS.T.hg38 C3L-02662 GBM WXS tumor CPT0267260007 48a74119-daeb-4577-9c10-649d7d71f72e_wxs_gdc_realn.bam 26349424274 BAM harmonized CPTAC3 77333b37-7fa5-4ebf-b262-6d92a3d5aef3 402faeb4447d65a8c64664a08effd65f {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor"} -C3L-02665.MethArray.Green.A C3L-02665 LSCC Methylation_Array tissue_normal CPT0192590010 203220070171_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6d72576a-ee69-4cb9-b497-6c97aece1cce 91ae62b92b69201ad3d5791c26c71954 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.MethArray.Green.T C3L-02665 LSCC Methylation_Array tumor CPT0192540007 203219670118_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ca78f25c-fcaa-4d90-bab0-5167fede8e10 c5092c9948faab56c7e495b4190e93e4 {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor"} -C3L-02665.MethArray.Red.A C3L-02665 LSCC Methylation_Array tissue_normal CPT0192590010 203220070171_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 10d2a675-e327-41e5-9b09-23527ea1c147 084b3f68c57b785f0d4ba92fba4433a5 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.MethArray.Red.T C3L-02665 LSCC Methylation_Array tumor CPT0192540007 203219670118_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 a2c24c81-e3d7-437e-bc95-80ea7434909f d99b7401a0a22f9a3c7417e6a5686b6a {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor"} -C3L-02665.miRNA-Seq.A.hg38 C3L-02665 LSCC miRNA-Seq tissue_normal CPT0192590007 db9906f8-3e4f-42c0-989d-7d7f354930bb_mirnaseq_gdc_realn.bam 223010931 BAM harmonized CPTAC3 90298cf3-b20a-438c-9bc0-04ad26e668df d2d88b2e3bbe76ab64a76cd49dcebb8a {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.miRNA-Seq.S21_L008_R1.T C3L-02665 LSCC miRNA-Seq tumor CPT0192540010 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L008_R1_001.unaln.bam 170000518 BAM S21_L008_R1 unaligned CPTAC3 c6a8a9b5-f268-4f48-ae6f-0bd758aba500 fc5c83554c15e784c01bc747876c8e0d {"aliquot_tag": "ALQ_3b3a47be", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02665.miRNA-Seq.S39_L002_R1.A C3L-02665 LSCC miRNA-Seq tissue_normal CPT0192590007 190206_UNC31-K00269_0191_AH2WY5BBXY_TAGCTT_S39_L002_R1_001.unaln.bam 204159256 BAM S39_L002_R1 unaligned CPTAC3 c4953e87-f12e-4f33-9585-f51f19c21dc1 a7756cf1cf3669ba38bebba7b99646bd {"aliquot_tag": "ALQ_44d527ed", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.miRNA-Seq.T.hg38 C3L-02665 LSCC miRNA-Seq tumor CPT0192540010 c3669206-de2a-489e-8606-60d8d967e625_mirnaseq_gdc_realn.bam 183676841 BAM harmonized CPTAC3 aa07d4a2-50b3-49a0-ab53-bf167518672e 3a6907b48e1daf5d809063ba85e37139 {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor"} -C3L-02665.RNA-Seq.chimeric.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.chimeric.gdc_realn.bam 107667861 BAM chimeric harmonized CPTAC3 62f80d54-7277-4a9c-8518-4ff7c1bade39 e826b994426c733df64bfb9a7b49afea {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.RNA-Seq.chimeric.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.chimeric.gdc_realn.bam 369394684 BAM chimeric harmonized CPTAC3 d98819b6-f7da-4c6d-b272-e8ec3cf81caa fe5184dc2ee653a987ce8d8edd0f56b0 {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor"} -C3L-02665.RNA-Seq.genomic.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.genomic.gdc_realn.bam 10064192624 BAM genomic harmonized CPTAC3 d057fab5-89c6-41af-96fc-95b1ff1382aa 4a88acf55a53540d88aebdb02f78d411 {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.RNA-Seq.genomic.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.genomic.gdc_realn.bam 10779354350 BAM genomic harmonized CPTAC3 46af26d9-4a1d-40b6-bd74-65326d192f3b 67ae7dd5c2b71bdfc865485457eee4ad {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor"} -C3L-02665.RNA-Seq.S20_L005_R1.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4358670008 FASTQ S20_L005_R1 unaligned CPTAC3 911034e6-d213-4670-aa95-42621a8126b8 e4b3d9ecc4d863180a4dc70780a3d104 {"aliquot_tag": "ALQ_3b3a47be", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02665.RNA-Seq.S20_L005_R2.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4920994757 FASTQ S20_L005_R2 unaligned CPTAC3 18bf9f8e-1f05-4202-baff-bd878b107a4f acc0806fc3c60c8df549be446e7377a4 {"aliquot_tag": "ALQ_3b3a47be", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02665.RNA-Seq.S3_L005_R1.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R1_001.fastq.gz 4523020406 FASTQ S3_L005_R1 unaligned CPTAC3 4f8d52cb-6616-49c1-8335-2b70f90ecbb8 26d0f8155f8f34ad0aa70b7400334103 {"aliquot_tag": "ALQ_44d527ed", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.RNA-Seq.S3_L005_R2.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R2_001.fastq.gz 5016031121 FASTQ S3_L005_R2 unaligned CPTAC3 33d2a666-0d27-43a9-bbf8-e3c7a27f59ae 7f071415e5e4f91ebda99efdbb6746a0 {"aliquot_tag": "ALQ_44d527ed", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.RNA-Seq.transcriptome.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.transcriptome.gdc_realn.bam 10282928607 BAM transcriptome harmonized CPTAC3 a2201aaf-712b-4489-9826-a1bb2112c4ce 6e136fe499f60438e7d82146dece46f3 {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.RNA-Seq.transcriptome.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.transcriptome.gdc_realn.bam 11801958603 BAM transcriptome harmonized CPTAC3 d0abde78-6492-4a60-8437-7371120db5b3 b8e52956e488531f2ea421d71fe27072 {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor"} -C3L-02665.WGS.A C3L-02665 LSCC WGS tissue_normal CPT0192590010 CPT0192590010.WholeGenome.RP-1303.bam 70185282591 BAM aligned CPTAC3 0d5dc11e-646d-479d-a2f1-a40d6f37399b e2a2c0e5d85dcaf9477694b2c1f6d858 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.WGS.A.hg38 C3L-02665 LSCC WGS tissue_normal CPT0192590010 79331dda-0cea-40c9-b02c-d051078d3f8e_wgs_gdc_realn.bam 103397245521 BAM harmonized CPTAC3 10c52c5f-9dc1-47bd-9430-abe69e502b17 be1e5e856009ba03f7e6ad7dbc3e68f0 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.WGS.N C3L-02665 LSCC WGS blood_normal CPT0192700002 CPT0192700002.WholeGenome.RP-1303.bam 64649164894 BAM aligned CPTAC3 622d34bd-b3bc-4618-9144-4e8c0c9b33cc 6d173998fe5ad492c3ab900ceb6672bf {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal"} -C3L-02665.WGS.N.hg38 C3L-02665 LSCC WGS blood_normal CPT0192700002 0340681b-f04e-4e51-8a70-319412cbe7f4_wgs_gdc_realn.bam 94340005437 BAM harmonized CPTAC3 c8276e38-9884-486f-a161-fe9cb40fed6f f077588942ff82aee3b8a397fa4785e0 {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal"} -C3L-02665.WGS.T C3L-02665 LSCC WGS tumor CPT0192540007 CPT0192540007.WholeGenome.RP-1303.bam 57939994079 BAM aligned CPTAC3 162d6029-9e84-4eba-9e3d-5c6b776d343d 6c7c870add2ef71e76df2208713a3a7a {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor"} -C3L-02665.WGS.T.hg38 C3L-02665 LSCC WGS tumor CPT0192540007 6673be4a-ae2d-48ae-a437-b47350c5a48c_wgs_gdc_realn.bam 84512606625 BAM harmonized CPTAC3 43cd46a6-d168-402e-9ec5-2ae662c2df58 89c75b8f679c42040a55ea7cee58253c {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor"} -C3L-02665.WXS.A C3L-02665 LSCC WXS tissue_normal CPT0192590010 CPT0192590010.WholeExome.RP-1303.bam 24534949077 BAM aligned CPTAC3 a41b9324-95a9-4199-9178-d2d3b3b58795 aa43aae15b78abf961fa36353b995f04 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.WXS.A.hg38 C3L-02665 LSCC WXS tissue_normal CPT0192590010 79331dda-0cea-40c9-b02c-d051078d3f8e_wxs_gdc_realn.bam 34088161391 BAM harmonized CPTAC3 3aea7de4-650a-44fb-89f9-88f6a597b11e 9b5cace4eafa9b2ba05f0114f7a8751f {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02665.WXS.N C3L-02665 LSCC WXS blood_normal CPT0192700002 CPT0192700002.WholeExome.RP-1303.bam 23863998898 BAM aligned CPTAC3 4484fe89-926a-4f52-abdc-3f8fe4b33c8f a9197912b7914839ff00af44c97479c1 {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal"} -C3L-02665.WXS.N.hg38 C3L-02665 LSCC WXS blood_normal CPT0192700002 0340681b-f04e-4e51-8a70-319412cbe7f4_wxs_gdc_realn.bam 33439410567 BAM harmonized CPTAC3 9db5fa11-bd55-4e4e-b441-21e5c745a879 78d4ba895708d48fc6276b4f025342f8 {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal"} -C3L-02665.WXS.T C3L-02665 LSCC WXS tumor CPT0192540007 CPT0192540007.WholeExome.RP-1303.bam 25938116609 BAM aligned CPTAC3 af362beb-109d-4284-a39e-74e4a6ef03f7 314caf19a8e079c4e7035c7aa7dfff47 {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor"} -C3L-02665.WXS.T.hg38 C3L-02665 LSCC WXS tumor CPT0192540007 6673be4a-ae2d-48ae-a437-b47350c5a48c_wxs_gdc_realn.bam 35856639443 BAM harmonized CPTAC3 eb4eb84a-346f-4c1a-acd7-fec383c35d9d 0ac8bacdccc7f80ba6f8909c461edbb6 {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor"} -C3L-02669.MethArray.Green.A C3L-02669 LSCC Methylation_Array tissue_normal CPT0202400007 203220070151_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 485d5f88-421c-4b91-8c09-96655ae2bafc 2aa659e41f213a4334e70e7b3b395901 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.MethArray.Green.T C3L-02669 LSCC Methylation_Array tumor CPT0202350007 203219670066_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bdbf31e6-673b-43e6-8e73-0df51c8fe237 2201bbbbf83d45c600b587fd9dc69019 {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor"} -C3L-02669.MethArray.Red.A C3L-02669 LSCC Methylation_Array tissue_normal CPT0202400007 203220070151_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 4924fd03-3837-4ddc-99f5-34f999b582eb a98aafb5d04215783689ed4e8d5dd947 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.MethArray.Red.T C3L-02669 LSCC Methylation_Array tumor CPT0202350007 203219670066_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 9a95118b-9a76-450b-b073-b13d6d8e6214 69dc56a5fc035668dabbd8e55f989023 {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor"} -C3L-02669.miRNA-Seq.A.hg38 C3L-02669 LSCC miRNA-Seq tissue_normal CPT0202400010 8112cf8f-7fae-40c4-8963-13abe37fb965_mirnaseq_gdc_realn.bam 267758234 BAM harmonized CPTAC3 6a156eab-9633-40a3-a726-8ca558c81245 3c2843fff4f56bbf5d40e04030483b8d {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.miRNA-Seq.S13_L001_R1.T C3L-02669 LSCC miRNA-Seq tumor CPT0202350010 190206_UNC31-K00269_0191_AH2WY5BBXY_CTAGCT_S13_L001_R1_001.unaln.bam 237018931 BAM S13_L001_R1 unaligned CPTAC3 e3b00195-8da1-4580-91aa-d640c9653772 9df0dcd5e108e943198dbacfdb46d68a {"aliquot_tag": "ALQ_f6c1aafd", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02669.miRNA-Seq.S45_L004_R1.A C3L-02669 LSCC miRNA-Seq tissue_normal CPT0202400010 190206_UNC31-K00269_0191_AH2WY5BBXY_TGACCA_S45_L004_R1_001.unaln.bam 242724962 BAM S45_L004_R1 unaligned CPTAC3 c880af95-42eb-4151-b6fb-4981fe37b7b6 95a9d4c6d8758c59735aacbadc71afa7 {"aliquot_tag": "ALQ_23241535", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.miRNA-Seq.T.hg38 C3L-02669 LSCC miRNA-Seq tumor CPT0202350010 e4eb107c-3bb7-4362-a39d-fea6fd382d8f_mirnaseq_gdc_realn.bam 256703933 BAM harmonized CPTAC3 38ace166-d082-47ab-9b83-3e6b96a74934 8f0ba1e781f6382fa947651458910010 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor"} -C3L-02669.RNA-Seq.chimeric.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.chimeric.gdc_realn.bam 98438137 BAM chimeric harmonized CPTAC3 ea809121-bbab-409b-a028-ef4b409f66e4 545077ad09e72602be03023e8509e366 {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.RNA-Seq.chimeric.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.chimeric.gdc_realn.bam 137340437 BAM chimeric harmonized CPTAC3 79ea1535-2f20-4598-a185-3a743306f311 e8a238b3917ccda67ea7a8a4ffcdece9 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor"} -C3L-02669.RNA-Seq.genomic.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.genomic.gdc_realn.bam 8929634265 BAM genomic harmonized CPTAC3 7d3e5d8e-d6d9-457b-bca7-bfe177b63b80 2526019214ecbde8162285170ec795b7 {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.RNA-Seq.genomic.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.genomic.gdc_realn.bam 8644109244 BAM genomic harmonized CPTAC3 595b010b-4e15-4cb6-9944-fc291883d03a bf48fc071604050659f5880ad04e1754 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor"} -C3L-02669.RNA-Seq.S11_L008_R1.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R1_001.fastq.gz 3692403747 FASTQ S11_L008_R1 unaligned CPTAC3 a7850847-6b0d-4716-8bd9-e3a82e347f22 87ce1acf96100a0eb20435857f2b23be {"aliquot_tag": "ALQ_f6c1aafd", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02669.RNA-Seq.S11_L008_R2.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R2_001.fastq.gz 3950076857 FASTQ S11_L008_R2 unaligned CPTAC3 4107e3b6-5695-4113-a3a4-e365c6b34f4e dcdb935846083b9fc97854d0b538b4e1 {"aliquot_tag": "ALQ_f6c1aafd", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02669.RNA-Seq.S24_L007_R1.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R1_001.fastq.gz 4199314894 FASTQ S24_L007_R1 unaligned CPTAC3 06be14d7-ed37-40be-8acb-5314fc60c8cf 2f54e62dc9d54e404e8da29571d162ce {"aliquot_tag": "ALQ_23241535", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.RNA-Seq.S24_L007_R2.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R2_001.fastq.gz 4388810999 FASTQ S24_L007_R2 unaligned CPTAC3 c0abdf9c-0eef-48a2-a405-b8d7aa71adc5 a3857ab67151d031e6b8359f768f5bcf {"aliquot_tag": "ALQ_23241535", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.RNA-Seq.transcriptome.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.transcriptome.gdc_realn.bam 9947310323 BAM transcriptome harmonized CPTAC3 2c5958d4-8d88-4057-908e-512e30c0de77 1efa9d903666395e455d9fad2a689f27 {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.RNA-Seq.transcriptome.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.transcriptome.gdc_realn.bam 9483324334 BAM transcriptome harmonized CPTAC3 bc3e3333-8f1a-4aa8-9171-4bd2a659351e a60bf5f42a9228c6b63a9b476e864be7 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor"} -C3L-02669.WGS.A C3L-02669 LSCC WGS tissue_normal CPT0202400007 CPT0202400007.WholeGenome.RP-1303.bam 59737920421 BAM aligned CPTAC3 e6c535c6-784b-4d7d-a4ea-f0ff59fd0404 fd2bc82dae3e5975da91744070be26e4 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.WGS.A.hg38 C3L-02669 LSCC WGS tissue_normal CPT0202400007 4c3ef2d4-483c-4dfe-a215-ce07100e7acf_wgs_gdc_realn.bam 86773259935 BAM harmonized CPTAC3 3e15b469-8b14-4300-96ac-e12b491f4d95 bae8527e65f95ad0ca0da5145d37b86a {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.WGS.N C3L-02669 LSCC WGS blood_normal CPT0202510002 CPT0202510002.WholeGenome.RP-1303.bam 54999952826 BAM aligned CPTAC3 e535e832-8507-493c-a93a-6eb6a88af79a 3d9e475babeb56f9bb98ac3cb32335a1 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02669.WGS.N.hg38 C3L-02669 LSCC WGS blood_normal CPT0202510002 76b8bd0d-a73f-44c1-95f4-e059baba9717_wgs_gdc_realn.bam 80025204906 BAM harmonized CPTAC3 61410268-e0d8-40a3-9b7b-a81fb9005901 8ec773cabd83125e3111b0864ca739f1 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02669.WGS.T C3L-02669 LSCC WGS tumor CPT0202350007 CPT0202350007.WholeGenome.RP-1303.bam 71042003978 BAM aligned CPTAC3 b879ba2b-bcf8-438c-9321-a5df715d727a 8ced9e7062e000b4906c2c71fc2b9533 {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor"} -C3L-02669.WGS.T.hg38 C3L-02669 LSCC WGS tumor CPT0202350007 3683abf1-0725-4c58-aa84-dda4cc85ed85_wgs_gdc_realn.bam 103535141933 BAM harmonized CPTAC3 5177ac64-c113-4dbe-af5e-8ce4c5bd3325 16306eff853588a5ab9f60a948f7e02f {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor"} -C3L-02669.WXS.A C3L-02669 LSCC WXS tissue_normal CPT0202400007 CPT0202400007.WholeExome.RP-1303.bam 24673804229 BAM aligned CPTAC3 8c696a3b-8ca3-493a-bc30-fc6b17f45afe ec29ad733c7935c711c2d914c91f5759 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.WXS.A.hg38 C3L-02669 LSCC WXS tissue_normal CPT0202400007 4c3ef2d4-483c-4dfe-a215-ce07100e7acf_wxs_gdc_realn.bam 34022385765 BAM harmonized CPTAC3 e01c19e0-d9e8-4b97-aec2-927ff02130a0 2e1b9d33f43bcbfde8aedf6628016027 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02669.WXS.N C3L-02669 LSCC WXS blood_normal CPT0202510002 CPT0202510002.WholeExome.RP-1303.bam 22973190954 BAM aligned CPTAC3 8182532d-f473-418d-af99-f7eb9bfb68ab c30bd8b686768a2c65792ee91287c551 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02669.WXS.N.hg38 C3L-02669 LSCC WXS blood_normal CPT0202510002 76b8bd0d-a73f-44c1-95f4-e059baba9717_wxs_gdc_realn.bam 31654712800 BAM harmonized CPTAC3 60a2da6d-6b97-4294-b514-bcba20bd27d0 d9f8750bc1edca2b1bee4a069d451655 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02669.WXS.T C3L-02669 LSCC WXS tumor CPT0202350007 CPT0202350007.WholeExome.RP-1303.bam 22103818789 BAM aligned CPTAC3 f4f6cd9c-f304-4cc2-a22e-533dc603dcef a3cbf3dd23b96cc9c14bb16ff89ba32b {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor"} -C3L-02669.WXS.T.hg38 C3L-02669 LSCC WXS tumor CPT0202350007 3683abf1-0725-4c58-aa84-dda4cc85ed85_wxs_gdc_realn.bam 30600985401 BAM harmonized CPTAC3 b390c351-79c1-445f-9ca6-e9d745acd5a3 d3b4e0c40366eab43e6723fcf65bbf1d {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor"} -C3L-02701.MethArray.Green.T C3L-02701 PDA Methylation_Array tumor CPT0227930007 203561450041_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d780e987-19c4-4dbe-aba8-cdecf09f2f4a 64ee9271c14759ff6ed6458c33164613 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02701.MethArray.Red.T C3L-02701 PDA Methylation_Array tumor CPT0227930007 203561450041_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 e8d10bc9-ab17-4f08-adb4-21d548f2a41d ebda7f7962f5d7ccbf249a8e5cd2cec6 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02701.miRNA-Seq.S15_L004_R1.T C3L-02701 PDA miRNA-Seq tumor CPT0227930010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTATAC_S15_L004_R1_001.unaln.bam 280665592 BAM S15_L004_R1 unaligned CPTAC3 df6d47e2-755b-4f99-94c8-8683551f6450 bd3aef874043e654b37873855b757d01 {"aliquot_tag": "ALQ_c80754e1", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02701.miRNA-Seq.T.hg38 C3L-02701 PDA miRNA-Seq tumor CPT0227930010 036f56d3-7235-4027-96ca-c0d58460c6c5_mirnaseq_gdc_realn.bam 317852009 BAM harmonized CPTAC3 38e08549-c188-4e0c-9a65-badeaf009a46 2a3184f411496ef83515af73430e98b1 {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor"} -C3L-02701.RNA-Seq.chimeric.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.chimeric.gdc_realn.bam 32368993 BAM chimeric harmonized CPTAC3 a2024df8-7483-44a0-aad5-b1187ad78152 db843f066536ec0849df029edd2f6a40 {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor"} -C3L-02701.RNA-Seq.genomic.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.genomic.gdc_realn.bam 8682494302 BAM genomic harmonized CPTAC3 08f0d47b-2153-41de-9d73-cd0ae5e70a80 bc4c0814d1d0247e15b5486b48394ce6 {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor"} -C3L-02701.RNA-Seq.S12_L003_R1.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R1_001.fastq.gz 3946761587 FASTQ S12_L003_R1 unaligned CPTAC3 c8d5f272-d5fa-4f82-9b12-5ca458271e35 58074ffb9934347a8151d52e9e8339df {"aliquot_tag": "ALQ_c80754e1", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02701.RNA-Seq.S12_L003_R2.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R2_001.fastq.gz 4490638753 FASTQ S12_L003_R2 unaligned CPTAC3 4e44f521-6100-40b3-b70f-8031e8d022c9 9e6c973c5a2dd504f7af50a5cc572c1d {"aliquot_tag": "ALQ_c80754e1", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02701.RNA-Seq.transcriptome.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.transcriptome.gdc_realn.bam 12568322953 BAM transcriptome harmonized CPTAC3 ee303213-9fd6-4c15-81de-e1752ea2ef76 d785ecc5b316e7d0cdbfc5d4c61b4aed {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor"} -C3L-02701.Targeted.T C3L-02701 PDA Targeted_Sequencing tumor CPT0227930007 CPT0227930007.CustomSelection.RP-1303.PDO-18786.bam 5841968173 BAM aligned CPTAC3 5c8ad51e-9364-48df-b88e-a77e2f3c9406 022834f2ac5361166c10a289ff367032 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02701.Targeted.T.hg38 C3L-02701 PDA Targeted_Sequencing tumor CPT0227930007 b094badf-1417-4766-aa99-0d8ef35fcf39_targetedsequencing_gdc_realn.bam 8321610766 BAM harmonized CPTAC3 741d63bd-f399-47a3-9cd8-2db1898f75ba 90ca096c73ad751ef2eb45e4e33dc35b {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02701.WGS.N C3L-02701 PDA WGS blood_normal CPT0228080006 CPT0228080006.WholeGenome.RP-1303.bam 58766887673 BAM aligned CPTAC3 a6047090-cd8e-41ff-b391-b5f354de6b49 f1e1c21ab7e4cbf2de761db3b7a9fceb {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02701.WGS.N.hg38 C3L-02701 PDA WGS blood_normal CPT0228080006 4b9778c1-f481-4848-a179-d1cadaba6491_wgs_gdc_realn.bam 85687698016 BAM harmonized CPTAC3 4aa07956-2f19-4be7-8a49-bee74e9439f7 ad91072561b1436dff1ee02d4d20964a {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02701.WGS.T C3L-02701 PDA WGS tumor CPT0227930007 CPT0227930007.WholeGenome.RP-1303.bam 64957875007 BAM aligned CPTAC3 7e3f1d4c-e0eb-4125-a969-da003b75d724 b8f5bdb72ca0fb460c164dda317c2157 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02701.WGS.T.hg38 C3L-02701 PDA WGS tumor CPT0227930007 b094badf-1417-4766-aa99-0d8ef35fcf39_wgs_gdc_realn.bam 93420807546 BAM harmonized CPTAC3 bc75bb21-726b-4c29-a4e2-782395cc376e b855736aa0eba5bda4cd98b712583cea {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02701.WXS.N C3L-02701 PDA WXS blood_normal CPT0228080006 CPT0228080006.WholeExome.RP-1303.bam 30773512770 BAM aligned CPTAC3 3f37ccf9-04b4-4f1a-813b-f8e704b9ca76 b6f2a03df5d9e3a02b9b4a742e1fd8eb {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02701.WXS.N.hg38 C3L-02701 PDA WXS blood_normal CPT0228080006 4b9778c1-f481-4848-a179-d1cadaba6491_wxs_gdc_realn.bam 42517587492 BAM harmonized CPTAC3 148c15d5-dba2-48ed-b3e8-29d021750822 7ab8cce89b2960bf2c825985d8aaae41 {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal"} -C3L-02701.WXS.T C3L-02701 PDA WXS tumor CPT0227930007 CPT0227930007.WholeExome.RP-1303.bam 53334014231 BAM aligned CPTAC3 2bdbec67-c876-44ee-8324-0897ac45bee7 188ad86a42999f8e70ea9dc3c6b99d8c {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02701.WXS.T.hg38 C3L-02701 PDA WXS tumor CPT0227930007 b094badf-1417-4766-aa99-0d8ef35fcf39_wxs_gdc_realn.bam 73506317458 BAM harmonized CPTAC3 97192635-ae5e-438a-ae14-93d599d766a3 2228820565000028be125f296d706acc {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor"} -C3L-02704.MethArray.Green.T C3L-02704 GBM Methylation_Array tumor CPT0189750007 203219650136_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a6bb4aa5-859a-4e6f-8b8b-a9d67d5eef10 8dad9f9a87b55c96e35ca2e231da6015 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor"} -C3L-02704.MethArray.Red.T C3L-02704 GBM Methylation_Array tumor CPT0189750007 203219650136_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 f23bdbf7-7064-43d1-a2fa-45afa7f10484 1c1e76bc93a87d767399633750522e93 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor"} -C3L-02704.miRNA-Seq.S33_L004_R1.T C3L-02704 GBM miRNA-Seq tumor CPT0189750010 181219_UNC31-K00269_0173_BHYGJJBBXX_CATGGC_S33_L004_R1_001.unaln.bam 211477747 BAM S33_L004_R1 unaligned CPTAC3 7fd57ea2-72de-43d6-89ec-c291b4fffee0 f0f4ffecc9cea04cec418e57925aeb73 {"aliquot_tag": "ALQ_853f9b61", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02704.miRNA-Seq.T.hg38 C3L-02704 GBM miRNA-Seq tumor CPT0189750010 696abcce-ec1a-4b95-9f94-f199f2c0565d_mirnaseq_gdc_realn.bam 237401097 BAM harmonized CPTAC3 ae19c6e5-80c0-43b1-9660-af87307297c7 d840e77e0afc5e9f3913d3367d5d6720 {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor"} -C3L-02704.RNA-Seq.chimeric.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.chimeric.gdc_realn.bam 171377954 BAM chimeric harmonized CPTAC3 ba00c3f2-c144-46c3-a21a-cf7dc9d764a1 d798617a766de3134d0cb38e9ca5ceaf {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor"} -C3L-02704.RNA-Seq.genomic.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.genomic.gdc_realn.bam 6588485698 BAM genomic harmonized CPTAC3 e7489018-3b6f-432e-a459-b7048f451b05 c3218fbc084fea439c2d961458de3790 {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor"} -C3L-02704.RNA-Seq.S6_L002_R1.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 2928245025 FASTQ S6_L002_R1 unaligned CPTAC3 a3d39428-6703-4d2b-b5d7-246b40fbf69a 0f3371677f8ca81ce849b32f455bb069 {"aliquot_tag": "ALQ_853f9b61", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02704.RNA-Seq.S6_L002_R2.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3086328739 FASTQ S6_L002_R2 unaligned CPTAC3 ba57ec8b-f0e7-4a29-be8c-069fe59c0721 4d546473833b5a186cdf55c17300ca98 {"aliquot_tag": "ALQ_853f9b61", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02704.RNA-Seq.transcriptome.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.transcriptome.gdc_realn.bam 7596220066 BAM transcriptome harmonized CPTAC3 b7c787ab-97fb-404d-884d-f65bbca82576 47b48d8b09d35f8cc7f226167ceea3dd {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor"} -C3L-02704.WGS.N C3L-02704 GBM WGS blood_normal CPT0190660002 CPT0190660002.WholeGenome.RP-1303.bam 71105654131 BAM aligned CPTAC3 88268abe-703d-4b4d-bd40-fa3a225b9c64 537cb4f5a6b6e0c920867c187cd903cd {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal"} -C3L-02704.WGS.N.hg38 C3L-02704 GBM WGS blood_normal CPT0190660002 1c6e61d2-277c-4f6a-be33-abc32bc1ab3e_wgs_gdc_realn.bam 101670983024 BAM harmonized CPTAC3 7c528b0b-1718-40ef-9a3d-a5380193191c 7e450e5f5d22ec1ed4967c9f9e479f48 {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal"} -C3L-02704.WGS.T C3L-02704 GBM WGS tumor CPT0189750007 CPT0189750007.WholeGenome.RP-1303.bam 63184966428 BAM aligned CPTAC3 30757d38-bd1a-42cd-a079-c0d257a3dcc6 717a9b882631f6ac6f2c98e70165f5f6 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor"} -C3L-02704.WGS.T.hg38 C3L-02704 GBM WGS tumor CPT0189750007 8e4b5a6a-fdac-4c85-aa19-e5bb3b250c03_wgs_gdc_realn.bam 91618904423 BAM harmonized CPTAC3 e26c1848-6bd1-4b4b-8bd0-791b69f45900 9686c984aa0899e6c30b339898f7e998 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor"} -C3L-02704.WXS.N C3L-02704 GBM WXS blood_normal CPT0190660002 CPT0190660002.WholeExome.RP-1303.bam 20791123513 BAM aligned CPTAC3 20cce083-7185-42df-8b2f-ece9e01b513f cc2d286a39af967f2beddeff573aefe4 {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal"} -C3L-02704.WXS.N.hg38 C3L-02704 GBM WXS blood_normal CPT0190660002 1c6e61d2-277c-4f6a-be33-abc32bc1ab3e_wxs_gdc_realn.bam 28339806836 BAM harmonized CPTAC3 a840eb1e-abb4-46f5-af74-3ac58829da81 4bb962c5619689d379a8987582a4ea56 {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal"} -C3L-02704.WXS.T C3L-02704 GBM WXS tumor CPT0189750007 CPT0189750007.WholeExome.RP-1303.bam 20935431504 BAM aligned CPTAC3 eaa249e0-0391-430a-b739-50c189e6a950 815b00718326063437c35b1a0771ad2f {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor"} -C3L-02704.WXS.T.hg38 C3L-02704 GBM WXS tumor CPT0189750007 8e4b5a6a-fdac-4c85-aa19-e5bb3b250c03_wxs_gdc_realn.bam 28583891269 BAM harmonized CPTAC3 f0c27168-d11e-4d6e-81fb-33a0b8bae0b6 00411d26abeed8213ada0d3b09657350 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor"} -C3L-02705.MethArray.Green.T C3L-02705 GBM Methylation_Array tumor CPT0189650007 203219670106_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 ca06806c-ecb3-4a0f-b507-3bfecd78e322 328250fb7e6c33356474bc22dcbf8410 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor"} -C3L-02705.MethArray.Red.T C3L-02705 GBM Methylation_Array tumor CPT0189650007 203219670106_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 17e6a759-7efd-41c5-a621-7a4c97415cd6 70b16ae4a93dec43470f093036aaa14e {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor"} -C3L-02705.miRNA-Seq.S32_L004_R1.T C3L-02705 GBM miRNA-Seq tumor CPT0189650010 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGGCG_S32_L004_R1_001.unaln.bam 194061849 BAM S32_L004_R1 unaligned CPTAC3 0482cc45-5688-47d8-823d-ae7df35e31de 1f48622a505a1b68c019aad7079c9451 {"aliquot_tag": "ALQ_4e6348c4", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02705.miRNA-Seq.T.hg38 C3L-02705 GBM miRNA-Seq tumor CPT0189650010 fbc5104f-754e-4779-8fb4-d63c9092ad3d_mirnaseq_gdc_realn.bam 212856196 BAM harmonized CPTAC3 eac73477-bb32-46a9-8694-a580aa5f40b5 ce3e31c236a49c7e485bee068179d121 {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor"} -C3L-02705.RNA-Seq.chimeric.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.chimeric.gdc_realn.bam 100506614 BAM chimeric harmonized CPTAC3 c1d9428e-21d9-4155-bf3d-f7fc2c1f2ddb b2bb3b94d38fd599a2631621725c2e14 {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor"} -C3L-02705.RNA-Seq.genomic.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.genomic.gdc_realn.bam 7711026633 BAM genomic harmonized CPTAC3 b6d06af1-6378-4942-bb43-2a33e1808a39 c88cd6a3c57d90ab79bfb1126dbdd51f {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor"} -C3L-02705.RNA-Seq.S9_L003_R1.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3323782301 FASTQ S9_L003_R1 unaligned CPTAC3 31ad97f9-8f0a-4939-9b27-aeecc345925d fdb618addcb5c7d16260e6059d1cecc4 {"aliquot_tag": "ALQ_4e6348c4", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02705.RNA-Seq.S9_L003_R2.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3599944937 FASTQ S9_L003_R2 unaligned CPTAC3 593ce048-3cf6-4a27-8c02-e81b2b48d95f edfa38aabdcbe976b181ef2ca8e404a1 {"aliquot_tag": "ALQ_4e6348c4", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02705.RNA-Seq.transcriptome.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.transcriptome.gdc_realn.bam 8175750568 BAM transcriptome harmonized CPTAC3 9cb576c9-3a85-476a-966b-04c5cd655d6c dfc1b932382d6bccec2b558d005d51e7 {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor"} -C3L-02705.scRNA-Seq.S3_L003_R1.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R1_001.fastq.gz 10955017630 FASTQ S3_L003_R1 unaligned CPTAC3 1f4d56f2-61d3-4c05-a994-a1db1fdc5323 d9e00f0c966dd4c2969aa4defa82b200 {"aliquot_tag": "ALQ_3e09bc4b", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02705.scRNA-Seq.S3_L003_R2.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R2_001.fastq.gz 25217192545 FASTQ S3_L003_R2 unaligned CPTAC3 4ef75921-f1d4-427e-88f2-2fd9e86fba92 8714fda1daa56a390c20e745dcdf5987 {"aliquot_tag": "ALQ_3e09bc4b", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02705.scRNA-Seq.T.hg38 C3L-02705 GBM scRNA-Seq tumor CPT0189650015 possorted_genome_bam.bam 29846950870 BAM harmonized CPTAC3 6e9347b8-7198-44e1-a4b9-2262ebf107b6 0a4091d16f4eae4f8d96aa76e9509025 {"aliquot_tag": "ALQ_3e09bc4b", "gdc_sample_type": "Primary Tumor"} -C3L-02705.WGS.N C3L-02705 GBM WGS blood_normal CPT0190640002 CPT0190640002.WholeGenome.RP-1303.bam 55336589099 BAM aligned CPTAC3 6218ca2a-3ec4-4ef6-83a3-ae00c9d83d12 e5149cb9803dd4cc33bb0c89b4d38afb {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal"} -C3L-02705.WGS.N.hg38 C3L-02705 GBM WGS blood_normal CPT0190640002 a820c7e7-180a-47e8-ad00-12e32236bbdf_wgs_gdc_realn.bam 80337375536 BAM harmonized CPTAC3 54197100-227c-4760-9df9-5c9f6e7df598 e6bde5807083cf3c0c2a1b14c76511c0 {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal"} -C3L-02705.WGS.T C3L-02705 GBM WGS tumor CPT0189650007 CPT0189650007.WholeGenome.RP-1303.bam 62119934828 BAM aligned CPTAC3 9127722a-7be2-446a-8639-7759914ab1f2 7f3328e7e724154bbc4cd53c3410fe17 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor"} -C3L-02705.WGS.T.hg38 C3L-02705 GBM WGS tumor CPT0189650007 07ff70d4-4e47-4ed0-8f19-32be9fe53cf1_wgs_gdc_realn.bam 89834325696 BAM harmonized CPTAC3 5b07e964-cdcf-4556-a369-372532307df2 533b30e31ac85d8cb31a4deea64e205d {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor"} -C3L-02705.WXS.N C3L-02705 GBM WXS blood_normal CPT0190640002 CPT0190640002.WholeExome.RP-1303.bam 23921223199 BAM aligned CPTAC3 ace72054-6526-4d3a-9533-911155e4464e 427d601d652892189e7d494b9dc1fb7d {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal"} -C3L-02705.WXS.N.hg38 C3L-02705 GBM WXS blood_normal CPT0190640002 a820c7e7-180a-47e8-ad00-12e32236bbdf_wxs_gdc_realn.bam 33111858068 BAM harmonized CPTAC3 39e2b5f2-e30a-41b3-ae85-d36f12964c1d 2e5f2ef571fa89637ebea76b52a02ddd {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal"} -C3L-02705.WXS.T C3L-02705 GBM WXS tumor CPT0189650007 CPT0189650007.WholeExome.RP-1303.bam 24686699586 BAM aligned CPTAC3 c9f72d80-1d36-4c66-9e10-739c0bb00d26 a8987953917b3a8bda80749ebd2285f1 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor"} -C3L-02705.WXS.T.hg38 C3L-02705 GBM WXS tumor CPT0189650007 07ff70d4-4e47-4ed0-8f19-32be9fe53cf1_wxs_gdc_realn.bam 33929758687 BAM harmonized CPTAC3 71546011-670f-4b34-b4b2-90737ea5a3f7 85e1a488e5c1cab3fd56cbb58d0ffce1 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor"} -C3L-02706.MethArray.Green.T C3L-02706 GBM Methylation_Array tumor CPT0216870007 203219670141_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1a62ba08-ade9-4254-8210-dbf11ff99343 1af4f0e034a5c6578962c68fe6561d10 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor"} -C3L-02706.MethArray.Red.T C3L-02706 GBM Methylation_Array tumor CPT0216870007 203219670141_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 7c8ebcc3-759a-4b62-a9ed-10bc4968db35 4f055c1cf6d1c4b20d8413a601555f9f {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor"} -C3L-02706.miRNA-Seq.S31_L002_R1.T C3L-02706 GBM miRNA-Seq tumor CPT0216870014 190206_UNC31-K00269_0191_AH2WY5BBXY_GTCCGC_S31_L002_R1_001.unaln.bam 207830996 BAM S31_L002_R1 unaligned CPTAC3 e6335b8b-2292-4316-955b-51c476263285 5565b88dc8c24f2cdfecbaf6db314adf {"aliquot_tag": "ALQ_d94ee9ca", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02706.miRNA-Seq.T.hg38 C3L-02706 GBM miRNA-Seq tumor CPT0216870014 f65e7d30-8882-4c0d-b0ba-7934041d7d6d_mirnaseq_gdc_realn.bam 231905166 BAM harmonized CPTAC3 8b1d07c7-7b2e-4bc0-828d-087ac09628a9 16c70f9ef5a2ba219af17fd88c90ad16 {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor"} -C3L-02706.RNA-Seq.chimeric.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.chimeric.gdc_realn.bam 52745807 BAM chimeric harmonized CPTAC3 1cdebccb-7586-40fd-bbd8-cfc5fdf29ed4 350dc8f006e5fa661b7538667e5325c8 {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor"} -C3L-02706.RNA-Seq.genomic.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.genomic.gdc_realn.bam 8007299304 BAM genomic harmonized CPTAC3 f559ffca-c104-4236-8bf2-c7d77d93e2b8 0cb6ab0587db3c38c1e7227ba23bcd6c {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor"} -C3L-02706.RNA-Seq.S2_L001_R1.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3577817850 FASTQ S2_L001_R1 unaligned CPTAC3 89b695ac-d4e9-4449-9e46-18dd3b95dd2f 23be2f34c0466462df51a6acd20e6320 {"aliquot_tag": "ALQ_d94ee9ca", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02706.RNA-Seq.S2_L001_R2.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3658901575 FASTQ S2_L001_R2 unaligned CPTAC3 4b7ebdc9-1b68-4257-b5d8-6c53874971c7 2b84d54e44322af43fa3fa0962a6d11e {"aliquot_tag": "ALQ_d94ee9ca", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02706.RNA-Seq.transcriptome.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.transcriptome.gdc_realn.bam 7331508021 BAM transcriptome harmonized CPTAC3 1d23c67b-5a08-4136-921f-659331c35c1d bc19bb19595c2bab342432bee64fc648 {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor"} -C3L-02706.WGS.N C3L-02706 GBM WGS blood_normal CPT0217920002 CPT0217920002.WholeGenome.RP-1303.bam 65117153902 BAM aligned CPTAC3 87c10938-fdb6-45f2-939b-78aae1375233 6176b9d5d2b55733ce3bf0f36692aa9c {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02706.WGS.N.hg38 C3L-02706 GBM WGS blood_normal CPT0217920002 755e756f-026d-41db-b701-7dee13a7f30a_wgs_gdc_realn.bam 95185893534 BAM harmonized CPTAC3 5864910a-3263-423a-ad31-5d2638cac474 ec005c5e3855c6873c14f5b138f51d21 {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02706.WGS.T C3L-02706 GBM WGS tumor CPT0216870007 CPT0216870007.WholeGenome.RP-1303.bam 54922463277 BAM aligned CPTAC3 544f870a-65e7-4c2b-9da8-4aaee81fbf07 a73c8cc696ca05f8a48bd5392df18a23 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor"} -C3L-02706.WGS.T.hg38 C3L-02706 GBM WGS tumor CPT0216870007 f407d022-d4a4-4304-80ee-652c521fbc00_wgs_gdc_realn.bam 78286655024 BAM harmonized CPTAC3 74572b3f-7094-4862-b48b-035d8bbdb9ae f4f65ee60164fe6756aed19fe3f4fba7 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor"} -C3L-02706.WXS.N C3L-02706 GBM WXS blood_normal CPT0217920002 CPT0217920002.WholeExome.RP-1303.bam 27187264690 BAM aligned CPTAC3 f3ca4ac0-8521-4e7a-a431-c78a55b6533c 7a03ea09e89c909e4ae3a60b8c3a7ec5 {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02706.WXS.N.hg38 C3L-02706 GBM WXS blood_normal CPT0217920002 755e756f-026d-41db-b701-7dee13a7f30a_wxs_gdc_realn.bam 37280785369 BAM harmonized CPTAC3 d000b0bf-3505-4f58-a283-b1c2fd66b729 1ecca774472e9b2325eb8cc3b571e00b {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02706.WXS.T C3L-02706 GBM WXS tumor CPT0216870007 CPT0216870007.WholeExome.RP-1303.bam 42654629061 BAM aligned CPTAC3 8555013f-824d-46a2-95ea-9c166e87e24c 1d73e1f56d31e8e8710c0a26dd61ac17 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor"} -C3L-02706.WXS.T.hg38 C3L-02706 GBM WXS tumor CPT0216870007 f407d022-d4a4-4304-80ee-652c521fbc00_wxs_gdc_realn.bam 58952405318 BAM harmonized CPTAC3 5f00b85e-ca3c-4dd5-8d77-a55e3bdce193 aab3b67710f3476faecf7f70fcd2d19f {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor"} -C3L-02707.MethArray.Green.T C3L-02707 GBM Methylation_Array tumor CPT0189850007 203219640158_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3e401d02-97e1-47ea-8b0f-711ccb39756f 26b7cdfbe5c4dfde81635af8ef1867de {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor"} -C3L-02707.MethArray.Red.T C3L-02707 GBM Methylation_Array tumor CPT0189850007 203219640158_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 b78a956c-f337-439d-a20d-a4d83f2e7c01 b5b7eeb11876eb94ef20b2242acdccbd {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor"} -C3L-02707.miRNA-Seq.S34_L004_R1.T C3L-02707 GBM miRNA-Seq tumor CPT0189850010 181219_UNC31-K00269_0173_BHYGJJBBXX_CATTTT_S34_L004_R1_001.unaln.bam 270683244 BAM S34_L004_R1 unaligned CPTAC3 e1acdb9b-3516-463e-9343-8f188333637f fd5ac622642d1b1096ffd23d640ac2f9 {"aliquot_tag": "ALQ_746929b4", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02707.miRNA-Seq.T.hg38 C3L-02707 GBM miRNA-Seq tumor CPT0189850010 c33d7302-616a-4893-b241-0599dfc4911e_mirnaseq_gdc_realn.bam 299226557 BAM harmonized CPTAC3 e9fce34c-8c44-4d5b-a8f8-019dc25f3156 106507ee0385205e61956ec814501889 {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor"} -C3L-02707.RNA-Seq.chimeric.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.chimeric.gdc_realn.bam 152530336 BAM chimeric harmonized CPTAC3 a78c60ca-9224-4cc8-8bc2-1079a1ce7145 e32cad24ac65608750f62465ffd0291d {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor"} -C3L-02707.RNA-Seq.genomic.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.genomic.gdc_realn.bam 7013383356 BAM genomic harmonized CPTAC3 a8031f1b-c0ea-492f-809e-cc3c4e334bfa d52a2d6768329febb267d4de525870fe {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor"} -C3L-02707.RNA-Seq.S8_L002_R1.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3065849813 FASTQ S8_L002_R1 unaligned CPTAC3 86aa2222-5a98-4edf-a4a1-4b1b2cebc0d8 5726edd296410b30b4aef46f4c672b4b {"aliquot_tag": "ALQ_746929b4", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02707.RNA-Seq.S8_L002_R2.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 3352987257 FASTQ S8_L002_R2 unaligned CPTAC3 5c3ce60e-8c59-48b3-b7bf-64d8d7316fbc 457d8b52a062dc96b70c6fbbcbea10f7 {"aliquot_tag": "ALQ_746929b4", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02707.RNA-Seq.transcriptome.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.transcriptome.gdc_realn.bam 6521456471 BAM transcriptome harmonized CPTAC3 9a304f9e-486c-4324-93ca-9a661a0716d7 15300fedad6b1b5fd38dd56d034fa752 {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor"} -C3L-02707.WGS.N C3L-02707 GBM WGS blood_normal CPT0190680002 CPT0190680002.WholeGenome.RP-1303.bam 60440234641 BAM aligned CPTAC3 e0aca9d3-1392-4671-baa1-d81c3cacbaf1 7976e5fe04f81f09e0745d5f049363e6 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal"} -C3L-02707.WGS.N.hg38 C3L-02707 GBM WGS blood_normal CPT0190680002 5d4b375a-b83e-417f-b1f4-c4abe77a2ace_wgs_gdc_realn.bam 88170424738 BAM harmonized CPTAC3 7baf3007-3a7a-4baf-86c0-95e2232f4291 b47f68ae3327f610b158251030e5ad83 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal"} -C3L-02707.WGS.T C3L-02707 GBM WGS tumor CPT0189850007 CPT0189850007.WholeGenome.RP-1303.bam 57357982445 BAM aligned CPTAC3 d060077c-46e6-40af-8587-f7962ef68d51 95bb3c1e99e6a2ea7ca706ef4e435b56 {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor"} -C3L-02707.WGS.T.hg38 C3L-02707 GBM WGS tumor CPT0189850007 a6b4f8b7-1b47-4773-9ffe-e9392779cd57_wgs_gdc_realn.bam 84148083314 BAM harmonized CPTAC3 be571f73-e5d0-4922-965e-bc6c5f7d3d1e 825bf388501475840d817da8c70326bc {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor"} -C3L-02707.WXS.N C3L-02707 GBM WXS blood_normal CPT0190680002 CPT0190680002.WholeExome.RP-1303.bam 27534432017 BAM aligned CPTAC3 bc867051-b17d-49be-893c-e3f463d40a6d e6b979177558d4483518074051a7f005 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal"} -C3L-02707.WXS.N.hg38 C3L-02707 GBM WXS blood_normal CPT0190680002 5d4b375a-b83e-417f-b1f4-c4abe77a2ace_wxs_gdc_realn.bam 37577665999 BAM harmonized CPTAC3 b71c6c97-1da4-4705-ae37-cce3ef3661b3 ce2fcedf8017b10725e1518b28104075 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal"} -C3L-02707.WXS.T C3L-02707 GBM WXS tumor CPT0189850007 CPT0189850007.WholeExome.RP-1303.bam 22992307854 BAM aligned CPTAC3 9d00ef43-3e90-4448-992d-0abdb37a469f 88a3644295128fbdae8841818c9378ee {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor"} -C3L-02707.WXS.T.hg38 C3L-02707 GBM WXS tumor CPT0189850007 a6b4f8b7-1b47-4773-9ffe-e9392779cd57_wxs_gdc_realn.bam 32194573527 BAM harmonized CPTAC3 30f2747d-a9ca-4f3b-8f81-5156a67453af f8b9de3da3e1a6fc894d4cdd67e365a7 {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor"} -C3L-02708.MethArray.Green.T C3L-02708 GBM Methylation_Array tumor CPT0189570007 203220070156_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2ca8791c-bb92-4dcc-a32c-c93802e81551 95b242e1b6e9ef4c7f9a0f2b68b8edb1 {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor"} -C3L-02708.MethArray.Red.T C3L-02708 GBM Methylation_Array tumor CPT0189570007 203220070156_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 14ef3c20-fccb-41e4-a1c6-c9b14093bc0e 30f5d8bd252346bdd10ad13eaf7a9095 {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor"} -C3L-02708.miRNA-Seq.S31_L004_R1.T C3L-02708 GBM miRNA-Seq tumor CPT0189570010 181219_UNC31-K00269_0173_BHYGJJBBXX_CACTCA_S31_L004_R1_001.unaln.bam 258533844 BAM S31_L004_R1 unaligned CPTAC3 54e61ff6-e219-4c4a-a305-e07547829b00 878ed108d8a5e5bf58cd7b3b51750a96 {"aliquot_tag": "ALQ_b237690a", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02708.miRNA-Seq.T.hg38 C3L-02708 GBM miRNA-Seq tumor CPT0189570010 ad0b2549-d1d8-46e9-9fd6-d29cd66f0fbc_mirnaseq_gdc_realn.bam 291342722 BAM harmonized CPTAC3 f8d59b60-c8eb-4bb9-886e-1bff21d99acc 781fd5abb36d818c3a512fc53b0f831e {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor"} -C3L-02708.RNA-Seq.chimeric.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.chimeric.gdc_realn.bam 150249585 BAM chimeric harmonized CPTAC3 a92542b3-585f-40b5-99f4-f9d5dbd19925 f9fd8299236ca7c645c2bd4b31c20f5c {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor"} -C3L-02708.RNA-Seq.genomic.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.genomic.gdc_realn.bam 9410543807 BAM genomic harmonized CPTAC3 bd948e8a-5eba-4d6e-9f08-459a3018885b 4287f6ec014031c51d178ddf38ef9743 {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor"} -C3L-02708.RNA-Seq.S4_L001_R1.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 4345690373 FASTQ S4_L001_R1 unaligned CPTAC3 096c41c4-c85b-4617-9334-4d1c4501e59d 5b12d99b2854d54fe0dde719150b873e {"aliquot_tag": "ALQ_b237690a", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02708.RNA-Seq.S4_L001_R2.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4718587824 FASTQ S4_L001_R2 unaligned CPTAC3 5cd8f085-f849-4d31-88f5-dca6ffae2523 5f39f63249d3e7531edb4e26af75da24 {"aliquot_tag": "ALQ_b237690a", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02708.RNA-Seq.transcriptome.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.transcriptome.gdc_realn.bam 9055149563 BAM transcriptome harmonized CPTAC3 b469cde6-b694-4189-8521-689a87bb4cbd 1b53fd74f1318fbddf509d328a200e02 {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor"} -C3L-02708.WGS.N C3L-02708 GBM WGS blood_normal CPT0190620002 CPT0190620002.WholeGenome.RP-1303.bam 65812188063 BAM aligned CPTAC3 a92fa05a-311a-4552-8b0b-e0f34bf47cfa 56640a4948195f252730a8569d0ef9b7 {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02708.WGS.N.hg38 C3L-02708 GBM WGS blood_normal CPT0190620002 2425979c-83fa-4c6b-a510-2efbadb018aa_wgs_gdc_realn.bam 95071768833 BAM harmonized CPTAC3 f2c47d0e-a53e-49e9-b3ed-f22d8804ca29 aaef3f53fd7e66ba4ca80a1a1306edb4 {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02708.WGS.T C3L-02708 GBM WGS tumor CPT0189570007 CPT0189570007.WholeGenome.RP-1303.bam 58008736343 BAM aligned CPTAC3 b69de777-11cb-48e1-b14f-980cdffa29a6 d53f1bcc04472c34a2fb1eb06a25891a {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor"} -C3L-02708.WGS.T.hg38 C3L-02708 GBM WGS tumor CPT0189570007 15a8ff7c-4a6d-4c89-ba29-1ddc51583f5c_wgs_gdc_realn.bam 82438224320 BAM harmonized CPTAC3 87dbd50f-3269-44f5-af60-29c0a6e39b6e 0807017b3f941dc0764b34acdc95815e {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor"} -C3L-02708.WXS.N C3L-02708 GBM WXS blood_normal CPT0190620002 CPT0190620002.WholeExome.RP-1303.bam 27463502847 BAM aligned CPTAC3 cd571367-4faa-484a-b3af-831860e9654e f87bd69bb9cd2444ba50de9d65ca20fe {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02708.WXS.N.hg38 C3L-02708 GBM WXS blood_normal CPT0190620002 2425979c-83fa-4c6b-a510-2efbadb018aa_wxs_gdc_realn.bam 37560775611 BAM harmonized CPTAC3 2bc3e092-fb76-4260-b4bc-d2fbe2f6c697 95fc41a3e5679725ade6cb1857631a01 {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02708.WXS.T C3L-02708 GBM WXS tumor CPT0189570007 CPT0189570007.WholeExome.RP-1303.bam 31507578969 BAM aligned CPTAC3 1ce9d9c2-99f5-4e0f-8110-9a1dc7c5f967 953fd3db597ca1298e561098edc92756 {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor"} -C3L-02708.WXS.T.hg38 C3L-02708 GBM WXS tumor CPT0189570007 15a8ff7c-4a6d-4c89-ba29-1ddc51583f5c_wxs_gdc_realn.bam 43683093040 BAM harmonized CPTAC3 ccbee74f-f7ce-4dc1-b7c4-5635c0623069 bd0bc6dacb9c4470735196859aee0e3f {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor"} -C3L-02741.MethArray.Green.T C3L-02741 UCEC Methylation_Array tumor CPT0188190007 203561620080_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 37598309-2b69-405b-9294-d03b72a35bed 87588bf450e804efc2d2cfcc9dc9f9d5 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor"} -C3L-02741.MethArray.Red.T C3L-02741 UCEC Methylation_Array tumor CPT0188190007 203561620080_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e706c7c4-bb3f-48ff-8181-2f0bc4200f2a 740d7a13e62b56aa5d1c798b2c94cb47 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor"} -C3L-02741.miRNA-Seq.S16_L001_R1.T C3L-02741 UCEC miRNA-Seq tumor CPT0188190010 190508_UNC31-K00269_0215_BH7FYKBBXY_CCGTCC_S16_L001_R1_001.unaln.bam 225865193 BAM S16_L001_R1 unaligned CPTAC3 8092be15-424d-4917-a945-f6313ccaad94 ed4fa4041f4409a0b2460ffb76a2e5a9 {"aliquot_tag": "ALQ_30e19ec9", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02741.miRNA-Seq.T.hg38 C3L-02741 UCEC miRNA-Seq tumor CPT0188190010 9f28dbdd-a300-4ef8-ab40-68fc37732e45_mirnaseq_gdc_realn.bam 252812275 BAM harmonized CPTAC3 af96f1da-85c7-4b8b-b528-5346035f4c50 2e83fb8095eefb73b3b904ff8483a603 {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.chimeric.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.chimeric.gdc_realn.bam 29523375 BAM chimeric harmonized CPTAC3 7ee718d8-b1f7-45c3-8268-41a468947e0d c6899a40b02011ce7127c60d923a34a4 {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.chimeric.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.chimeric.gdc_realn.bam 213315749 BAM chimeric harmonized CPTAC3 f060a413-b9fa-4711-857a-2c10e68490ae eb9a78d8661bdbc8670c9673aae57070 {"aliquot_tag": "ALQ_91409bb8", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.genomic.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.genomic.gdc_realn.bam 7273084969 BAM genomic harmonized CPTAC3 9d546ed1-c3d4-4849-9ab8-eb580364b7df 8d84638dbd14acca743b7439bcb350cf {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.genomic.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.genomic.gdc_realn.bam 11481403880 BAM genomic harmonized CPTAC3 b816c035-18d8-488a-86dd-8addbe39416d ba9098e2bbdac442adff64bf02555fa3 {"aliquot_tag": "ALQ_91409bb8", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.S33_R1.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R1_001.fastq.gz 7289862853 FASTQ S33_R1 unaligned CPTAC3 fea63445-8062-4de8-b135-3bc8abb87038 7e580313070a291a3a6599ede9ea2a9f {"aliquot_tag": "ALQ_91409bb8", "sample": "S33", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.S33_R2.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R2_001.fastq.gz 7675178438 FASTQ S33_R2 unaligned CPTAC3 2a0d4a66-5975-440b-97bf-4fb195a27398 cc2f0c8dacce68033780641558050a05 {"aliquot_tag": "ALQ_91409bb8", "sample": "S33", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.S34_L005_R1.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R1_001.fastq.gz 3407301989 FASTQ S34_L005_R1 unaligned CPTAC3 8b6df366-157d-44c2-ac01-ce3f4dfc59ce c7f1b8511a2cf604e3e373b9b8b936e6 {"aliquot_tag": "ALQ_30e19ec9", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.S34_L005_R2.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R2_001.fastq.gz 3972708041 FASTQ S34_L005_R2 unaligned CPTAC3 a7be553d-7271-4bc6-a69b-e3895f8d5429 9289a4ebe0f2a0fd631e961ae6a65bdc {"aliquot_tag": "ALQ_30e19ec9", "sample": "S34", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.transcriptome.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.transcriptome.gdc_realn.bam 9740494405 BAM transcriptome harmonized CPTAC3 cacd4563-c7c2-4281-9a4d-adffe6f73776 3de9af634a19a4d96a558c6a31df75cd {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor"} -C3L-02741.RNA-Seq.transcriptome.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.transcriptome.gdc_realn.bam 7345399590 BAM transcriptome harmonized CPTAC3 b81a4a21-f077-41c7-ba62-0c856ee892b8 8c603c081f55f3d7cb8ed187b096e853 {"aliquot_tag": "ALQ_91409bb8", "gdc_sample_type": "Primary Tumor"} -C3L-02741.WGS.N C3L-02741 UCEC WGS blood_normal CPT0183110002 CPT0183110002.WholeGenome.RP-1303.bam 76225307001 BAM aligned CPTAC3 1efe2de1-d220-4bf0-beda-1842241c9976 dd5d51c215144cb39a8c767a5cd9d2f6 {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02741.WGS.N.hg38 C3L-02741 UCEC WGS blood_normal CPT0183110002 96b9e5f8-e9be-4538-9034-958d5afb4cdf_wgs_gdc_realn.bam 109810096415 BAM harmonized CPTAC3 dfbb4a41-0997-4e29-bee9-d16b65319f8e c9b354c0eaaba1b88c27361338826931 {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02741.WGS.T C3L-02741 UCEC WGS tumor CPT0188190007 CPT0188190007.WholeGenome.RP-1303.bam 62435661938 BAM aligned CPTAC3 5af840eb-f364-4dd8-9dc5-e2157d27e359 ea33154c6e8fd1cd414a79e78fab5516 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor"} -C3L-02741.WGS.T.hg38 C3L-02741 UCEC WGS tumor CPT0188190007 d2d45122-887e-473b-baa2-dc47abb5d7b5_wgs_gdc_realn.bam 92963824718 BAM harmonized CPTAC3 fed4c41c-633f-40d3-9a37-05240e2e8ef5 723a6a3cf6d20cbc44dd185d85a49180 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor"} -C3L-02741.WXS.N C3L-02741 UCEC WXS blood_normal CPT0183110002 CPT0183110002.WholeExome.RP-1303.bam 18212719238 BAM aligned CPTAC3 e2165089-1ad2-4021-bdff-6516a1d0d579 0cc6b32d6b2ffd3992f8239ffb17d91e {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02741.WXS.N.hg38 C3L-02741 UCEC WXS blood_normal CPT0183110002 96b9e5f8-e9be-4538-9034-958d5afb4cdf_wxs_gdc_realn.bam 25148838017 BAM harmonized CPTAC3 2e2d6d89-ce4a-48ee-bc2e-200f34a54973 d4cd5979f6b85a95e3a4a4960839c584 {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02741.WXS.T C3L-02741 UCEC WXS tumor CPT0188190007 CPT0188190007.WholeExome.RP-1303.bam 30704369940 BAM aligned CPTAC3 3114bf40-03c2-4d07-b770-b7c17fba2f72 43c9386ce8856da289c5cf422656d9da {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor"} -C3L-02741.WXS.T.hg38 C3L-02741 UCEC WXS tumor CPT0188190007 d2d45122-887e-473b-baa2-dc47abb5d7b5_wxs_gdc_realn.bam 42949995592 BAM harmonized CPTAC3 5dea83cc-58d1-4b29-9327-b9bee94a919e e24df97afe336c3576cc7df6df8b6525 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor"} -C3L-02744.MethArray.Green.T C3L-02744 UCEC Methylation_Array tumor CPT0188370006 203561620153_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 dc9f5a35-ef11-4cc8-a316-50acd190c162 0cd77582c741c19b66dae608b5b66efe {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor"} -C3L-02744.MethArray.Red.T C3L-02744 UCEC Methylation_Array tumor CPT0188370006 203561620153_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6d538141-8982-4b5c-95d8-be6f87b135e4 c369ef3a45831e7866bb4dd16e3e7c3e {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor"} -C3L-02744.miRNA-Seq.S171_L008_R1.T C3L-02744 UCEC miRNA-Seq tumor CPT0188370009 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTTCC_S171_L008_R1_001.unaln.bam 205074391 BAM S171_L008_R1 unaligned CPTAC3 c461f89e-644e-4ae4-8c7a-15eeec91eb50 61706947269e71eb2007cc6a8dc9474d {"aliquot_tag": "ALQ_a2de0846", "sample": "S171", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02744.miRNA-Seq.T.hg38 C3L-02744 UCEC miRNA-Seq tumor CPT0188370009 4c8ae1fe-2866-4610-961b-61010b380e04_mirnaseq_gdc_realn.bam 228967805 BAM harmonized CPTAC3 344ef38f-b6d8-4144-a2f3-64c0bc4370a5 1e5965238e3bc757273b46515b2af0d8 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.chimeric.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.chimeric.gdc_realn.bam 285970366 BAM chimeric harmonized CPTAC3 098d3de3-c649-4f76-9a23-050664622e0c d2cabddfbc21d85ffb9aed1be90a56f8 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.chimeric.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.chimeric.gdc_realn.bam 560174952 BAM chimeric harmonized CPTAC3 59b9fc95-c654-4223-90fa-7d11a1c4455a 39edb9806cfe6b651da146812c0111ca {"aliquot_tag": "ALQ_64c03d78", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.genomic.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.genomic.gdc_realn.bam 7949785699 BAM genomic harmonized CPTAC3 a973b9ac-15fe-4e62-a9b8-2feb18d61574 c24e963f8c8e0547f8b9d40f1c7f5c51 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.genomic.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.genomic.gdc_realn.bam 25442290919 BAM genomic harmonized CPTAC3 7e13d88d-603d-49fe-a135-25a4216595da b1f6da7dbf0623d3340c9a849162d449 {"aliquot_tag": "ALQ_64c03d78", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.S22_L006_R1.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R1_001.fastq.gz 3092692456 FASTQ S22_L006_R1 unaligned CPTAC3 31af8f62-4e41-44be-be45-2fad56f86ba9 b0a00f4ba392f69b20ea934462aae7a5 {"aliquot_tag": "ALQ_a2de0846", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.S22_L006_R2.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R2_001.fastq.gz 3162279933 FASTQ S22_L006_R2 unaligned CPTAC3 1adfd980-889e-4035-b2ef-c072f11c5127 bb983d9bcc04261d01dfe94ec9460918 {"aliquot_tag": "ALQ_a2de0846", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.S68_R1.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R1_001.fastq.gz 16112707998 FASTQ S68_R1 unaligned CPTAC3 f5742c28-83bc-4fe0-82bf-4b90b9550cb0 78d40828a5bd1c5ba9b93f9ac68d6b79 {"aliquot_tag": "ALQ_64c03d78", "sample": "S68", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.S68_R2.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R2_001.fastq.gz 16564949198 FASTQ S68_R2 unaligned CPTAC3 e4b97fe5-5b5a-403c-8710-e7c2ebdac55d 99942fe17899337c3fb1f63523aced99 {"aliquot_tag": "ALQ_64c03d78", "sample": "S68", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.transcriptome.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.transcriptome.gdc_realn.bam 5995278336 BAM transcriptome harmonized CPTAC3 b20bac08-9940-4163-9645-13adecf7e2e9 1cf25337d32317364013941ddbaca9c1 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor"} -C3L-02744.RNA-Seq.transcriptome.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.transcriptome.gdc_realn.bam 17548626833 BAM transcriptome harmonized CPTAC3 2f3b103d-0cf0-499c-a8f3-bf0565618424 95df804807d2f7fa7e2aebe562aada06 {"aliquot_tag": "ALQ_64c03d78", "gdc_sample_type": "Primary Tumor"} -C3L-02744.WGS.N C3L-02744 UCEC WGS blood_normal CPT0183150002 CPT0183150002.WholeGenome.RP-1303.bam 72024140799 BAM aligned CPTAC3 84c6d232-b96d-41de-9a9a-df3f77aba50f 8d489160d5472e89a90af32b50c41fc0 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02744.WGS.N.hg38 C3L-02744 UCEC WGS blood_normal CPT0183150002 70b87a14-c5ca-4d59-b9cc-1ef4034dc2bf_wgs_gdc_realn.bam 105233001134 BAM harmonized CPTAC3 7d94c451-3960-4452-8ed9-07819a66b5cc 21b639c833d42e248b0a5f6922f1f1a2 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02744.WGS.T C3L-02744 UCEC WGS tumor CPT0188370006 CPT0188370006.WholeGenome.RP-1303.bam 85146710241 BAM aligned CPTAC3 b09baca7-b177-45c3-90c0-bb8d80839cd1 d354d62ebad7ef1eb769d5eaa3f13c2b {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor"} -C3L-02744.WGS.T.hg38 C3L-02744 UCEC WGS tumor CPT0188370006 9236b3c7-aee7-4c4b-9ff4-e2d51eea0daa_wgs_gdc_realn.bam 123381243114 BAM harmonized CPTAC3 aa50351c-e5f7-416e-a509-6f8e53bfc85f 56f3034ee0625c24d7dcc9896814d79f {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor"} -C3L-02744.WXS.N C3L-02744 UCEC WXS blood_normal CPT0183150002 CPT0183150002.WholeExome.RP-1303.bam 31366503602 BAM aligned CPTAC3 4bc8f690-caa0-40c7-aadb-4294408f3c47 472eec1da883fba7fc04ea619da112f7 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02744.WXS.N.hg38 C3L-02744 UCEC WXS blood_normal CPT0183150002 70b87a14-c5ca-4d59-b9cc-1ef4034dc2bf_wxs_gdc_realn.bam 42978855470 BAM harmonized CPTAC3 3917d081-1f26-4efa-aeca-c84aad552931 fa3ebcf872f8fcec654fcd59e424ba17 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02744.WXS.T C3L-02744 UCEC WXS tumor CPT0188370006 CPT0188370006.WholeExome.RP-1303.bam 34689260392 BAM aligned CPTAC3 d41b2d64-342d-4104-890e-0e1233ba7477 2678b8c2640a407e38137a6a5396fa50 {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor"} -C3L-02744.WXS.T.hg38 C3L-02744 UCEC WXS tumor CPT0188370006 9236b3c7-aee7-4c4b-9ff4-e2d51eea0daa_wxs_gdc_realn.bam 47445863841 BAM harmonized CPTAC3 0f74b825-7a91-4bd4-a469-46b2f30e57bc 9446a286619c31eebc3bb74dcb7a4897 {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor"} -C3L-02746.MethArray.Green.T C3L-02746 UCEC Methylation_Array tumor CPT0188270007 203561450084_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d2af6067-b975-4af2-afa2-a438e6769be3 c0a2a6856e9748f09ed94535ca21939b {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor"} -C3L-02746.MethArray.Red.T C3L-02746 UCEC Methylation_Array tumor CPT0188270007 203561450084_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 b4414504-caef-41f4-b697-e1ff2e2d7f4d 8b5ad472d4f82f506b1a6439491b7858 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor"} -C3L-02746.miRNA-Seq.S17_L003_R1.T C3L-02746 UCEC miRNA-Seq tumor CPT0188270010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 162413020 BAM S17_L003_R1 unaligned CPTAC3 d3186121-2c90-4324-86a6-b74722165323 d2e69aa136c14f6299269ec977ddfabd {"aliquot_tag": "ALQ_9455206", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02746.miRNA-Seq.T.hg38 C3L-02746 UCEC miRNA-Seq tumor CPT0188270010 f0a79064-c834-4444-a7f5-aefa169e1d1e_mirnaseq_gdc_realn.bam 182383310 BAM harmonized CPTAC3 c0418d48-fb0f-4f46-83eb-2304bd804373 a9e7e920e8edff83dd9d44c084961e0f {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.chimeric.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.chimeric.gdc_realn.bam 53945773 BAM chimeric harmonized CPTAC3 22389747-ba18-4af7-94ca-b8f63fd16a0c db33a1702f8a11dc7ae92c7a49047f59 {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.chimeric.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.chimeric.gdc_realn.bam 223539657 BAM chimeric harmonized CPTAC3 1e3fdd48-fabb-4f36-b2c3-10f6717a962a 2b2484dd17ad0b72deb92c1b536f0754 {"aliquot_tag": "ALQ_677c61ad", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.genomic.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.genomic.gdc_realn.bam 11251199938 BAM genomic harmonized CPTAC3 32f4436b-06a9-43f9-b06f-07228017e7b1 7ff2259d2334754d221f6fbcb185cf8d {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.genomic.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.genomic.gdc_realn.bam 11073087979 BAM genomic harmonized CPTAC3 35c8a2b1-06f3-4822-8f11-4d6580dbc8a5 afaeedc628880bee338b5abdb0633d5f {"aliquot_tag": "ALQ_677c61ad", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.S23_L006_R1.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R1_001.fastq.gz 5591113902 FASTQ S23_L006_R1 unaligned CPTAC3 1a05a9f1-2da4-4d3a-b21c-2a1d06004c87 ee65a98cd2c8ce61fce3595c04889531 {"aliquot_tag": "ALQ_9455206", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.S23_L006_R2.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R2_001.fastq.gz 6294101184 FASTQ S23_L006_R2 unaligned CPTAC3 548e3dc3-22cf-4cf2-86d9-f0d14680ca4a 969bc79dd104d582f7631be23b886bc6 {"aliquot_tag": "ALQ_9455206", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.S91_R1.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R1_001.fastq.gz 7172855919 FASTQ S91_R1 unaligned CPTAC3 718534c6-57a1-4f75-bbd4-2e76a6958f36 45dbcdf8261643e84adf4aedc41b5c92 {"aliquot_tag": "ALQ_677c61ad", "sample": "S91", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.S91_R2.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R2_001.fastq.gz 7436698089 FASTQ S91_R2 unaligned CPTAC3 caca8140-9ce4-47f3-947d-f988c94218ff 60b50738e788e488ed7761bc8f82fe34 {"aliquot_tag": "ALQ_677c61ad", "sample": "S91", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.transcriptome.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.transcriptome.gdc_realn.bam 15373701340 BAM transcriptome harmonized CPTAC3 758fc5d2-f544-4923-950e-c9fda4174694 a1f4ecf19b7d4fc7d48cce7d95ef133a {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor"} -C3L-02746.RNA-Seq.transcriptome.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.transcriptome.gdc_realn.bam 7031934207 BAM transcriptome harmonized CPTAC3 02fd8de2-6cc4-42cd-bcda-3b603b3b3f36 3b22221419fc19953b564673ee7cb895 {"aliquot_tag": "ALQ_677c61ad", "gdc_sample_type": "Primary Tumor"} -C3L-02746.WGS.N C3L-02746 UCEC WGS blood_normal CPT0183130002 CPT0183130002.WholeGenome.RP-1303.bam 84112668708 BAM aligned CPTAC3 210bb094-1a0c-4c84-9781-57d8f34c2e9d e503968c37c16be2f934b2985e614dea {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02746.WGS.N.hg38 C3L-02746 UCEC WGS blood_normal CPT0183130002 fa737772-42d4-4fb7-95ed-008187ef10a8_wgs_gdc_realn.bam 121451252317 BAM harmonized CPTAC3 4e1197b9-5d2f-41fe-8abe-e1592b3398ab a8c6063606976fd0f1adf598f1055be8 {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02746.WGS.T C3L-02746 UCEC WGS tumor CPT0188270007 CPT0188270007.WholeGenome.RP-1303.bam 70182947819 BAM aligned CPTAC3 43c5e9d5-c037-48e2-a7d7-673cf3c3d195 61f03481c49d2c4fbb0617ef3e7ab745 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor"} -C3L-02746.WGS.T.hg38 C3L-02746 UCEC WGS tumor CPT0188270007 84bfcb2e-ac14-4ca3-94f6-e8215b2cbfa4_wgs_gdc_realn.bam 105440803308 BAM harmonized CPTAC3 e7566e72-28b9-47b1-8fbc-2840d7674c34 88c58f95669413d0ee002e4a49d5d24e {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor"} -C3L-02746.WXS.N C3L-02746 UCEC WXS blood_normal CPT0183130002 CPT0183130002.WholeExome.RP-1303.bam 31779524585 BAM aligned CPTAC3 0d09b299-8293-4290-b1c0-f0415a5d98e9 1564cb6c5fd36fa6b8dafaef08124b20 {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02746.WXS.N.hg38 C3L-02746 UCEC WXS blood_normal CPT0183130002 fa737772-42d4-4fb7-95ed-008187ef10a8_wxs_gdc_realn.bam 44278366601 BAM harmonized CPTAC3 9b546bc5-8a2b-468d-a871-b7ba28c7f33e aa14484ac34e4d9b291fcb07e7ee8c63 {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal"} -C3L-02746.WXS.T C3L-02746 UCEC WXS tumor CPT0188270007 CPT0188270007.WholeExome.RP-1303.bam 21422265319 BAM aligned CPTAC3 ee1bf528-fea1-4142-936a-19974fb14d39 d28bedf3daf1ff641b6bee44cc2c0131 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor"} -C3L-02746.WXS.T.hg38 C3L-02746 UCEC WXS tumor CPT0188270007 84bfcb2e-ac14-4ca3-94f6-e8215b2cbfa4_wxs_gdc_realn.bam 29485937209 BAM harmonized CPTAC3 5cc0dbfc-1ca5-4bc9-a2ad-ab5e9be09fde ebe9c7d49e313d7757d060d89b8896b8 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor"} -C3L-02747.MethArray.Green.T C3L-02747 UCEC Methylation_Array tumor CPT0188480007 203561620012_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a5ca41d3-ba74-4ea6-8348-1e00bcfc1ead 3254bfe12c929b8c6a9881ae8ba071b7 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor"} -C3L-02747.MethArray.Red.T C3L-02747 UCEC Methylation_Array tumor CPT0188480007 203561620012_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6b8b3d3e-cbe7-4a8a-b7cb-b725ed6bf9f9 d5cb2381a41595c9960e0d2560f202ee {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor"} -C3L-02747.miRNA-Seq.S18_L003_R1.T C3L-02747 UCEC miRNA-Seq tumor CPT0188480010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 270670384 BAM S18_L003_R1 unaligned CPTAC3 1dbb6198-f082-4b0b-afb7-047098299025 7e3bf3c8df1cd87d7143ff88e3be1734 {"aliquot_tag": "ALQ_5d4c26ca", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02747.miRNA-Seq.T.hg38 C3L-02747 UCEC miRNA-Seq tumor CPT0188480010 6db032da-bfa4-4470-94de-67291b215048_mirnaseq_gdc_realn.bam 302749315 BAM harmonized CPTAC3 440b3726-8c93-48cc-863c-29805e625045 b9cbc7c7d90d43063ac07ec79f3d8318 {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.chimeric.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.chimeric.gdc_realn.bam 42571889 BAM chimeric harmonized CPTAC3 1ea7bc1f-a3e8-454f-b4b0-cd148e7cb971 2a98c0014714d4f32fab7429beba20a5 {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.chimeric.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.chimeric.gdc_realn.bam 196734723 BAM chimeric harmonized CPTAC3 dfa8410c-2597-46ae-bbc9-44812419f35d 80b5427886e69111c5ff64e48db86412 {"aliquot_tag": "ALQ_e83c940d", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.genomic.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.genomic.gdc_realn.bam 8437102035 BAM genomic harmonized CPTAC3 04fbce54-4b69-48a1-8b3a-82f20169e53d da6923fb819d60a78660b63ec1f7f6af {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.genomic.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.genomic.gdc_realn.bam 10145836482 BAM genomic harmonized CPTAC3 fa62e697-c8c6-4cdd-b9ad-1a81210a74cc 0a09d1425557fcf6b3fa0b7f38c4d7e7 {"aliquot_tag": "ALQ_e83c940d", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.S22_L006_R1.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R1_001.fastq.gz 3888266390 FASTQ S22_L006_R1 unaligned CPTAC3 3cb651e1-c2a2-4f7d-bcbc-348c255b49ed 4f1ec37bc5e49adb0d48b80a45f1a5f5 {"aliquot_tag": "ALQ_5d4c26ca", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.S22_L006_R2.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R2_001.fastq.gz 4526930489 FASTQ S22_L006_R2 unaligned CPTAC3 134b54a4-abe8-48db-ac37-8c8d30ace986 92d17525c013668e1e8d48e2b9c3ba7d {"aliquot_tag": "ALQ_5d4c26ca", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.S75_R1.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R1_001.fastq.gz 5437415111 FASTQ S75_R1 unaligned CPTAC3 81138028-4130-4cf4-ac27-bf36e3e83039 2361608470dbbce13e38c4248bf66977 {"aliquot_tag": "ALQ_e83c940d", "sample": "S75", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.S75_R2.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R2_001.fastq.gz 5531099316 FASTQ S75_R2 unaligned CPTAC3 56276d60-2394-48ff-a438-318c70060ca5 7a2600c542c621589ad4cfc91c8ab263 {"aliquot_tag": "ALQ_e83c940d", "sample": "S75", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.transcriptome.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.transcriptome.gdc_realn.bam 10346980095 BAM transcriptome harmonized CPTAC3 f24e4862-a539-456f-83e2-b255d1d983cc 1a560634f33dda3cc7e393c65a067bd2 {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor"} -C3L-02747.RNA-Seq.transcriptome.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.transcriptome.gdc_realn.bam 6144280229 BAM transcriptome harmonized CPTAC3 0e7407e5-478d-440b-9875-11515f5ccca3 5c1770402d6cf20052432e185ff2f93a {"aliquot_tag": "ALQ_e83c940d", "gdc_sample_type": "Primary Tumor"} -C3L-02747.WGS.N C3L-02747 UCEC WGS blood_normal CPT0183170002 CPT0183170002.WholeGenome.RP-1303.bam 57478028720 BAM aligned CPTAC3 fc85e981-c23a-4956-97bc-d80e53e3ee5b ae3ea5d8d517eebf1e846e8e06d60c05 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02747.WGS.N.hg38 C3L-02747 UCEC WGS blood_normal CPT0183170002 9b229a65-285d-4818-9b93-380fc9891fbb_wgs_gdc_realn.bam 83974110633 BAM harmonized CPTAC3 ca6433d5-5901-4360-a0cc-be3613506b88 ead078fcc42616a8e420ae865e895426 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02747.WGS.T C3L-02747 UCEC WGS tumor CPT0188480007 CPT0188480007.WholeGenome.RP-1303.bam 81248685669 BAM aligned CPTAC3 4effdb2d-6695-4885-ab95-e4ad787b363e 2280791d9b41749d60a04b04c2b8c0b0 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor"} -C3L-02747.WGS.T.hg38 C3L-02747 UCEC WGS tumor CPT0188480007 d698845e-1220-41d8-bf5d-7363a5df2d14_wgs_gdc_realn.bam 117784944412 BAM harmonized CPTAC3 1894bbde-fb66-4ab5-9676-95a28fb8225b 782f76bb6685d2b5e6c2f07a50815197 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor"} -C3L-02747.WXS.N C3L-02747 UCEC WXS blood_normal CPT0183170002 CPT0183170002.WholeExome.RP-1303.bam 25147522172 BAM aligned CPTAC3 4cadbbf0-a771-4045-9f24-ab727fe2f91e 6db07ac00c0389cdb55302ede3aeb255 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02747.WXS.N.hg38 C3L-02747 UCEC WXS blood_normal CPT0183170002 9b229a65-285d-4818-9b93-380fc9891fbb_wxs_gdc_realn.bam 34183771830 BAM harmonized CPTAC3 a45c7228-e30a-47b0-a158-a95993f62abd d6753e55bc518ca54e9b225677a718f2 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02747.WXS.T C3L-02747 UCEC WXS tumor CPT0188480007 CPT0188480007.WholeExome.RP-1303.bam 23143178993 BAM aligned CPTAC3 8bfdcdad-21be-4fd2-b769-0d2f511f2e87 3689d034352e023cf9d80ce4f9a13c70 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor"} -C3L-02747.WXS.T.hg38 C3L-02747 UCEC WXS tumor CPT0188480007 d698845e-1220-41d8-bf5d-7363a5df2d14_wxs_gdc_realn.bam 32406282251 BAM harmonized CPTAC3 30713f87-3cc5-43c7-b2e0-18165e94110f b2078e4ee9e738ab3532869aa753b78c {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor"} -C3L-02779.MethArray.Green.Tpb C3L-02779 AML Methylation_Array tumor_peripheral_blood CPT0414580002 205987780161_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a6b52a94-487c-47b7-9b19-b218b811654f e85233312dee3b9f0a517c42292bb709 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.MethArray.Red.Tpb C3L-02779 AML Methylation_Array tumor_peripheral_blood CPT0414580002 205987780161_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 52556bea-9e87-40b8-8f55-c3a0aed9ec05 869fedfc50cc7441661ac71c2a2b8167 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.miRNA-Seq.S12_L003_R1.Tpb C3L-02779 AML miRNA-Seq tumor_peripheral_blood CPT0414600001 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L003_R1_001.unaln.bam 243275360 BAM S12_L003_R1 unaligned CPTAC3 94e4c3db-4ac5-4d7c-9fe2-9f9dc8a9e224 fb691c430ba63db16ae0ea2d747449d7 {"aliquot_tag": "ALQ_dc90f9c7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.miRNA-Seq.Tpb.hg38 C3L-02779 AML miRNA-Seq tumor_peripheral_blood CPT0414600001 b1537e34-cb2d-4c8d-ae30-d6bffa344894_mirnaseq_gdc_realn.bam 274968207 BAM harmonized CPTAC3 6c0dbad0-1e0e-4f45-a764-db5a35506cca 2ea8672600b6907a6c3c3b3de6aa8933 {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.RNA-Seq.chimeric.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.chimeric.gdc_realn.bam 538570659 BAM chimeric harmonized CPTAC3 d81b83da-9f1b-4a49-8c56-5bbade78add8 49571d09412ddb66579003c94741fc42 {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.RNA-Seq.genomic.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.genomic.gdc_realn.bam 8311113266 BAM genomic harmonized CPTAC3 25b19379-cafc-4e2c-8c34-36569a456c16 58bff88a6370685150954bc9ec5d2670 {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.RNA-Seq.S8_L002_R1.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4043417939 FASTQ S8_L002_R1 unaligned CPTAC3 9d599c99-8756-426d-a6df-9620e51431fa 73636c741ebc04b9e8b60ddde8b9719a {"aliquot_tag": "ALQ_dc90f9c7", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.RNA-Seq.S8_L002_R2.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 4516145295 FASTQ S8_L002_R2 unaligned CPTAC3 0a70c3b2-77d6-409d-82cf-1f729b1c3f15 1e3bf10f27664efe7f5e97c098fa63fb {"aliquot_tag": "ALQ_dc90f9c7", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.RNA-Seq.transcriptome.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.transcriptome.gdc_realn.bam 7955888806 BAM transcriptome harmonized CPTAC3 8135f300-7a6a-4226-80d1-5772663f8b35 13ef3ae37549bf0cb4cf64c972ab6a0b {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.WGS.Nbc C3L-02779 AML WGS buccal_normal CPT0414560001 CPT0414560001.WholeGenome.RP-2158.bam 51106807073 BAM aligned CPTAC3 bde00534-14de-4f41-a5da-254de28cccc9 10694725d3fad760f8ab20d7685902c1 {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02779.WGS.Nbc.hg38 C3L-02779 AML WGS buccal_normal CPT0414560001 dad5716d-fddd-4631-806b-9163381abba9_wgs_gdc_realn.bam 154929092591 BAM harmonized CPTAC3 15c037cc-7c13-4563-aebd-cf963b3cb3e8 ce2715530e35895a79269a3e4d9b9037 {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02779.WGS.Tpb C3L-02779 AML WGS tumor_peripheral_blood CPT0414580002 CPT0414580002.WholeGenome.RP-2158.bam 55163205149 BAM aligned CPTAC3 e3b10ca1-4fb9-4398-a789-2fe0443c1b5f d2e315473865cd6a534454c0fb3941f9 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.WGS.Tpb.hg38 C3L-02779 AML WGS tumor_peripheral_blood CPT0414580002 821248bb-5679-49bd-ad37-14d52192cecf_wgs_gdc_realn.bam 165956927260 BAM harmonized CPTAC3 9e27196b-be7e-4e2e-8aa6-7b75b02bda7e 8d35f9d8779cbb9a928e0f1e262ba04c {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.WXS.Nbc C3L-02779 AML WXS buccal_normal CPT0414560001 CPT0414560001.WholeExome.RP-1303.bam 26995372670 BAM aligned CPTAC3 e8e09b24-a305-48b8-836a-4c7f6e683357 21175e68a3f5f22ef85f6eda1a06354c {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02779.WXS.Nbc.hg38 C3L-02779 AML WXS buccal_normal CPT0414560001 dad5716d-fddd-4631-806b-9163381abba9_wxs_gdc_realn.bam 37612139490 BAM harmonized CPTAC3 adf548df-165a-4d62-8dbc-e520d78a169d 802e17c328b527b5d2e48d3cfde00d63 {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-02779.WXS.Tpb C3L-02779 AML WXS tumor_peripheral_blood CPT0414580002 CPT0414580002.WholeExome.RP-1303.bam 22631885864 BAM aligned CPTAC3 de5489ea-90a5-473f-a60e-902dd94a947c c9bbee886a27e9d838ce29a89ba61245 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02779.WXS.Tpb.hg38 C3L-02779 AML WXS tumor_peripheral_blood CPT0414580002 821248bb-5679-49bd-ad37-14d52192cecf_wxs_gdc_realn.bam 31291655214 BAM harmonized CPTAC3 16e82297-fe5b-4c67-96a2-f94850796941 745d182fed4c57353bb039c095ad7d5b {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-02800.MethArray.Green.T C3L-02800 UCEC Methylation_Array tumor CPT0186900011 203561620132_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 36a4caa9-ad39-418a-895b-90a6a62aee3a 265912c2b390652de69b3f95a1251c50 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor"} -C3L-02800.MethArray.Red.T C3L-02800 UCEC Methylation_Array tumor CPT0186900011 203561620132_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 dc32943f-007e-4f4e-ac79-5d931a21ee55 14978eafed3ff3238c7e2df9f7888be4 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor"} -C3L-02800.miRNA-Seq.S10_L003_R1.T C3L-02800 UCEC miRNA-Seq tumor CPT0186900014 190508_UNC31-K00269_0215_BH7FYKBBXY_TAGCTT_S10_L003_R1_001.unaln.bam 160952979 BAM S10_L003_R1 unaligned CPTAC3 43c2f7df-b696-4f60-a299-e69d3b900eaa 787ec51b74423b4cd4f3a3b81edb82f4 {"aliquot_tag": "ALQ_86f0c191", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02800.miRNA-Seq.T.hg38 C3L-02800 UCEC miRNA-Seq tumor CPT0186900014 240ce257-3ffd-4c04-90e6-3acc81095712_mirnaseq_gdc_realn.bam 178746928 BAM harmonized CPTAC3 4033fddf-8012-421b-b450-d8239ce00c51 b1df2576414d91d08c7a50ff85d750c4 {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor"} -C3L-02800.RNA-Seq.chimeric.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.chimeric.gdc_realn.bam 39257718 BAM chimeric harmonized CPTAC3 abf2c1b6-546c-4b3c-8423-ca4d4a884dad bf81f55f973d59db86a8056a22d966cf {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor"} -C3L-02800.RNA-Seq.genomic.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.genomic.gdc_realn.bam 9349924123 BAM genomic harmonized CPTAC3 d5be1158-7d0d-4cd7-acd5-d16a56530b9c cf9ec77bbf3cd39fa9d3093c3a1b115e {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor"} -C3L-02800.RNA-Seq.S30_L008_R1.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R1_001.fastq.gz 4508868945 FASTQ S30_L008_R1 unaligned CPTAC3 74796345-0996-44be-aa00-56c8b0a1a1ac 77e0c91c86d620b499fb80f88f47bed0 {"aliquot_tag": "ALQ_86f0c191", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02800.RNA-Seq.S30_L008_R2.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R2_001.fastq.gz 5069170985 FASTQ S30_L008_R2 unaligned CPTAC3 923374c5-05a8-454f-ab87-2f06fb05351b 1281e30a172e916984cd238924cd6d12 {"aliquot_tag": "ALQ_86f0c191", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02800.RNA-Seq.transcriptome.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.transcriptome.gdc_realn.bam 11243313052 BAM transcriptome harmonized CPTAC3 61373585-171d-4f9e-8f1c-d64eb3a1201c 9b7b5e69baf45ff012a079a0398401f4 {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor"} -C3L-02800.WGS.N C3L-02800 UCEC WGS blood_normal CPT0186930002 CPT0186930002.WholeGenome.RP-1303.bam 76994663609 BAM aligned CPTAC3 8403d25d-aee7-4997-ac02-d60dd863a866 842f42332ec479dd69f88b194e174e4c {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal"} -C3L-02800.WGS.N.hg38 C3L-02800 UCEC WGS blood_normal CPT0186930002 abea41ce-f548-4b59-94df-c25ea1a3d80b_wgs_gdc_realn.bam 111088746017 BAM harmonized CPTAC3 0f97e2fd-22e2-4ae6-9129-26647af4cb04 7e0fe5d6274ce6da94d049838f5fa916 {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal"} -C3L-02800.WGS.T C3L-02800 UCEC WGS tumor CPT0186900011 CPT0186900011.WholeGenome.RP-1303.bam 67360853598 BAM aligned CPTAC3 dba5cee9-0c6a-4332-92c7-47511d01e3fc 510332158df764f1a8ab91281e5aefba {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor"} -C3L-02800.WGS.T.hg38 C3L-02800 UCEC WGS tumor CPT0186900011 aeb5e654-0b85-4347-a109-e0312b7778a4_wgs_gdc_realn.bam 100283907964 BAM harmonized CPTAC3 3017d721-58f9-4818-b2cc-4a25a5869caa a5849dc3ffb96d65b92ba1309fc574a0 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor"} -C3L-02800.WXS.N C3L-02800 UCEC WXS blood_normal CPT0186930002 CPT0186930002.WholeExome.RP-1303.bam 22166772827 BAM aligned CPTAC3 e02dcd03-be34-45d7-95c3-40379172cccd 6adfa31ef361dfe28d6ea0c12fb37c7e {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal"} -C3L-02800.WXS.N.hg38 C3L-02800 UCEC WXS blood_normal CPT0186930002 abea41ce-f548-4b59-94df-c25ea1a3d80b_wxs_gdc_realn.bam 30498507591 BAM harmonized CPTAC3 d811b0c8-e883-4156-99fd-3a06f8794068 24027d1b2f4a33ad951cda7e5b6c7296 {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal"} -C3L-02800.WXS.T C3L-02800 UCEC WXS tumor CPT0186900011 CPT0186900011.WholeExome.RP-1303.bam 17537496250 BAM aligned CPTAC3 b41aec9d-cb55-4a10-9887-6dc24d66275d e050b58798a0bc7307042918992f9516 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor"} -C3L-02800.WXS.T.hg38 C3L-02800 UCEC WXS tumor CPT0186900011 aeb5e654-0b85-4347-a109-e0312b7778a4_wxs_gdc_realn.bam 24766170268 BAM harmonized CPTAC3 ad42449e-3474-49f9-ae0c-31e10778016f e2ac28b3299753946b786c67e90e1108 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor"} -C3L-02802.DUP_2919687e.WGS.T C3L-02802 UCEC WGS tumor CPT0174890011_1 CPT0174890011_1.WholeGenome.RP-1303.bam 61753133166 BAM aligned CPTAC3 8813404d-81e6-4a76-8b2e-5f96182564d7 3599b035206bc3e7de2b81174e012283 {"aliquot_tag": "DUP_2919687e", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3L-02802.DUP_2919687e.WGS.T.hg38 C3L-02802 UCEC WGS tumor CPT0174890011_1 77405ed9-5f5c-4671-bc9a-3ac348e17d81_wgs_gdc_realn.bam 90492676749 BAM harmonized CPTAC3 f488ffbb-175a-4f0d-82b1-dbe7eaa933bb 4d6a97177edea267ba2d4b3ea3a2a9bc {"aliquot_tag": "DUP_2919687e", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3L-02802.MethArray.Green.T C3L-02802 UCEC Methylation_Array tumor CPT0174890011 203561620016_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 52468aaa-59af-40e6-8bbb-894e2fbb2718 50be4dcf3bf8ef56aee6689327e779dd {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor"} -C3L-02802.MethArray.Red.T C3L-02802 UCEC Methylation_Array tumor CPT0174890011 203561620016_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 46220e8f-43ef-4b3a-9a42-82f2ecf89436 8e87c65d76797cc6e6bcaf5518e58165 {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor"} -C3L-02802.miRNA-Seq.S15_L003_R1.T C3L-02802 UCEC miRNA-Seq tumor CPT0174890014 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGTCA_S15_L003_R1_001.unaln.bam 283399994 BAM S15_L003_R1 unaligned CPTAC3 9f8995f2-bdf6-4cc0-b8ea-22e7f4722528 cb092b98a6b53a2f42973e8faa4e3e78 {"aliquot_tag": "ALQ_e0373c0", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02802.miRNA-Seq.T.hg38 C3L-02802 UCEC miRNA-Seq tumor CPT0174890014 d04ea83e-8873-4424-915d-a796ae15b228_mirnaseq_gdc_realn.bam 316165756 BAM harmonized CPTAC3 7b7a2d54-35f2-4169-a889-55d39b4e5789 191731fa630e9062d363bc535e19132e {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.chimeric.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.chimeric.gdc_realn.bam 38082988 BAM chimeric harmonized CPTAC3 f33ebf20-36ab-4ada-8087-c9ebc5109283 3eb92e6fd0136fb5e1be1979b444b488 {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.chimeric.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.chimeric.gdc_realn.bam 212784333 BAM chimeric harmonized CPTAC3 d57ffb73-14e2-4698-9b49-5eae188fd0e4 923388a00ad1643cd511f3496e1f9d89 {"aliquot_tag": "ALQ_dbfe54ba", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.genomic.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.genomic.gdc_realn.bam 8867478957 BAM genomic harmonized CPTAC3 748b8279-7c87-4599-a526-fc0a2c51babd f8b316c38b33077e2f1a7d63509ff3d2 {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.genomic.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.genomic.gdc_realn.bam 9830096020 BAM genomic harmonized CPTAC3 e15aa588-2690-48d5-9f90-aa832f81a0d4 986d9619869d1d73885dc4afbcf68c5a {"aliquot_tag": "ALQ_dbfe54ba", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.S27_L007_R1.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R1_001.fastq.gz 4130266603 FASTQ S27_L007_R1 unaligned CPTAC3 2e2de8aa-2ee9-4900-bb8f-a617e3a161dc a902b6b6b9357675c404dd8a96939c57 {"aliquot_tag": "ALQ_e0373c0", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.S27_L007_R2.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R2_001.fastq.gz 4774861744 FASTQ S27_L007_R2 unaligned CPTAC3 ecf64c63-45b2-4d74-a4c6-04042fa0c697 968a2eff76682875223f893aa1798a7a {"aliquot_tag": "ALQ_e0373c0", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.S90_R1.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R1_001.fastq.gz 6331741084 FASTQ S90_R1 unaligned CPTAC3 2919c92e-46ae-471b-8662-1e786b95dc8a 3b88775d3c3625a0332819e70bd085b8 {"aliquot_tag": "ALQ_dbfe54ba", "sample": "S90", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.S90_R2.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R2_001.fastq.gz 6509016362 FASTQ S90_R2 unaligned CPTAC3 06e16c82-9218-434d-8e82-3af32f30c2aa 2ed9eb53871965b6aa459da30c8df9b6 {"aliquot_tag": "ALQ_dbfe54ba", "sample": "S90", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.transcriptome.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.transcriptome.gdc_realn.bam 10083283549 BAM transcriptome harmonized CPTAC3 54f035be-ae8c-4669-ab0a-e3b70d8180d8 49f99206f85187c0803444bd8383a501 {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor"} -C3L-02802.RNA-Seq.transcriptome.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.transcriptome.gdc_realn.bam 4714027512 BAM transcriptome harmonized CPTAC3 2a6fd9da-27e1-422d-bce0-e3190190a541 b3b2a3b07df5b60fffa2f422b12eaedb {"aliquot_tag": "ALQ_dbfe54ba", "gdc_sample_type": "Primary Tumor"} -C3L-02802.WGS.N C3L-02802 UCEC WGS blood_normal CPT0175510002 CPT0175510002.WholeGenome.RP-1303.bam 69215051337 BAM aligned CPTAC3 211e1e48-db95-4b28-9c05-6bb8b06e4906 dba5d5bd63b5c38e7c8ef2acb897a081 {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02802.WGS.N.hg38 C3L-02802 UCEC WGS blood_normal CPT0175510002 b9b8e517-9b96-4668-96cb-472c9816bfc8_wgs_gdc_realn.bam 101697758036 BAM harmonized CPTAC3 d614692d-045c-4bd8-8e70-7d28a11c9f4c fe5906267f0b252594a723923260f692 {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02802.WGS.T C3L-02802 UCEC WGS tumor CPT0174890011 CPT0174890011.WholeGenome.RP-1303.bam 18865620534 BAM aligned CPTAC3 0fac09db-2c4b-4895-9b6d-7c44b07d7f7f 0aaa0d0a4f58278e6bc7c46e1c53e238 {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor"} -C3L-02802.WGS.T.hg38 C3L-02802 UCEC WGS tumor CPT0174890011 0c89a20c-69f1-4162-9729-c75034dc27d0_wgs_gdc_realn.bam 26554254314 BAM harmonized CPTAC3 71666999-77aa-4e24-b4bc-1984c0c7b0b7 96244a31a931d5951805cf645eb1fa6d {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor"} -C3L-02802.WXS.N C3L-02802 UCEC WXS blood_normal CPT0175510002 CPT0175510002.WholeExome.RP-1303.bam 26443131102 BAM aligned CPTAC3 8d9b5461-3c4b-48ab-a964-1807c1662068 34d534e954f2f776fc7bac7fa502c59d {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02802.WXS.N.hg38 C3L-02802 UCEC WXS blood_normal CPT0175510002 b9b8e517-9b96-4668-96cb-472c9816bfc8_wxs_gdc_realn.bam 36608830087 BAM harmonized CPTAC3 9e7b3f3a-ca82-4ff9-a0c3-c77268d3e0bd 71c54fa3095f555f0aa6516ab5e4aa92 {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02802.WXS.T C3L-02802 UCEC WXS tumor CPT0174890011 CPT0174890011.WholeExome.RP-1303.bam 18865620611 BAM aligned CPTAC3 9f312395-419c-41b6-8075-c1386f95c6a4 e67f59133ac61bdbb223ba343f5afd7b {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor"} -C3L-02802.WXS.T.hg38 C3L-02802 UCEC WXS tumor CPT0174890011 0c89a20c-69f1-4162-9729-c75034dc27d0_wxs_gdc_realn.bam 26756936969 BAM harmonized CPTAC3 28427451-80b4-4744-bd0b-7038b448ac26 273e9b9b53a68359b3397c871b883bbd {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.MethArray.Green.T C3L-02809 PDA Methylation_Array tumor CPT0174700007 203561620064_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 1d501941-e7fd-4b8d-aaf5-e2211f1de4e6 30a237d70f62c7dbb1eb1249ad6e5928 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.MethArray.Red.T C3L-02809 PDA Methylation_Array tumor CPT0174700007 203561620064_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 63c5cde7-07ce-4fa9-8f36-72b696f5c500 f33eeacce34caf7704a634521dc2c638 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.miRNA-Seq.A.hg38 C3L-02809 PDA miRNA-Seq tissue_normal CPT0174800007 ef83cc65-3e3f-4092-a4fe-592f1a8c9948_mirnaseq_gdc_realn.bam 250523542 BAM harmonized CPTAC3 7365e5f0-a2af-4ad1-8e7a-08d074761d0a a61e7aaaa1bbf40a05d2bc3807a60728 {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02809.miRNA-Seq.S36_L002_R1.A C3L-02809 PDA miRNA-Seq tissue_normal CPT0174800007 190813_UNC32-K00270_0196_AH5MCWBBXY_CAGATC_S36_L002_R1_001.unaln.bam 215453078 BAM S36_L002_R1 unaligned CPTAC3 a30ddaaf-2586-4978-9f83-1316ea123567 03e991b6fbea96325838488666ca2281 {"aliquot_tag": "ALQ_8301714a", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02809.miRNA-Seq.S9_L006_R1.T C3L-02809 PDA miRNA-Seq tumor CPT0174700010 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGGCG_S9_L006_R1_001.unaln.bam 166126529 BAM S9_L006_R1 unaligned CPTAC3 d266c728-5f2d-4f88-93fc-275f604ffa61 17edbb1aab3301d16d5f3143f31057ad {"aliquot_tag": "ALQ_f528677d", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02809.miRNA-Seq.T.hg38 C3L-02809 PDA miRNA-Seq tumor CPT0174700010 1aa3fda7-744d-443b-8907-e653ee5056e0_mirnaseq_gdc_realn.bam 188227635 BAM harmonized CPTAC3 768835f8-4785-405e-843f-cfa56106cb4b 46f37f4c3e3a27ce71aaa20fee211c64 {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor"} -C3L-02809.RNA-Seq.chimeric.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.chimeric.gdc_realn.bam 30890242 BAM chimeric harmonized CPTAC3 57dc75ed-1e64-4853-a527-7c95febd44ca d306139d283c61585d1744e1241852d7 {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02809.RNA-Seq.chimeric.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.chimeric.gdc_realn.bam 43408460 BAM chimeric harmonized CPTAC3 f7b36f52-218f-4452-ba89-79cd96b53274 e7c0ee9075bb2631c324d640742a224a {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor"} -C3L-02809.RNA-Seq.genomic.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.genomic.gdc_realn.bam 7019982424 BAM genomic harmonized CPTAC3 fcadb0b3-5882-42fc-84fa-1ae534b5f55f 7478472bd2f5b4ad547c08a712351249 {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02809.RNA-Seq.genomic.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.genomic.gdc_realn.bam 9130664975 BAM genomic harmonized CPTAC3 c2eff32f-c4a7-4119-9702-2c4d3aa67d4e c03bde0f865d65c50f94662db078f69d {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor"} -C3L-02809.RNA-Seq.S18_L005_R1.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R1_001.fastq.gz 3768839415 FASTQ S18_L005_R1 unaligned CPTAC3 fec185cf-c77d-4d82-988b-d5cbfdd25c70 d6ad8eabe2669cb9766f2b22776b38e1 {"aliquot_tag": "ALQ_f528677d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02809.RNA-Seq.S18_L005_R2.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R2_001.fastq.gz 4213239979 FASTQ S18_L005_R2 unaligned CPTAC3 257d874a-4d88-428f-b288-8fbfcb67b18a 06ff9370e2bbee783d0dffedf408dbc9 {"aliquot_tag": "ALQ_f528677d", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02809.RNA-Seq.S21_L005_R1.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R1_001.fastq.gz 3510252624 FASTQ S21_L005_R1 unaligned CPTAC3 704a56a4-7f6e-4930-bddf-44ba1e59e6fd 0864afd3f1fdcd20ac6d10ab8335837b {"aliquot_tag": "ALQ_8301714a", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02809.RNA-Seq.S21_L005_R2.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R2_001.fastq.gz 3547038861 FASTQ S21_L005_R2 unaligned CPTAC3 2d6bffbd-1904-4b5f-89bd-2f151d719cb3 3efad2927f5cd9ce8c1708471740673d {"aliquot_tag": "ALQ_8301714a", "sample": "S21", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02809.RNA-Seq.transcriptome.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.transcriptome.gdc_realn.bam 9429987561 BAM transcriptome harmonized CPTAC3 79fd57eb-edd3-4996-a5e8-7be7a595bee2 7c0ebb9d030aaf9d49864c6f2258c12f {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02809.RNA-Seq.transcriptome.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.transcriptome.gdc_realn.bam 9258465871 BAM transcriptome harmonized CPTAC3 967ca3f5-da1f-413a-a029-bdf66c76f964 2d0ded9561513f721365e9a4fb196cce {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor"} -C3L-02809.Targeted.T C3L-02809 PDA Targeted_Sequencing tumor CPT0174700007 CPT0174700007.CustomSelection.RP-1303.PDO-18786.bam 4268814606 BAM aligned CPTAC3 9a32dd39-1dc9-4b33-bcdf-80fdb1283d5f f36573dc020dd9aa89260f372c7c5cda {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.Targeted.T.hg38 C3L-02809 PDA Targeted_Sequencing tumor CPT0174700007 e4e0dade-f15e-493a-8390-0ed607e6e4bd_targetedsequencing_gdc_realn.bam 6022386737 BAM harmonized CPTAC3 0aec5be7-5bcd-44c5-9136-68c9f3c124d4 2750071a9c5458a201b04b4a87e1388a {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.WGS.N C3L-02809 PDA WGS blood_normal CPT0175500002 CPT0175500002.WholeGenome.RP-1303.bam 60344179541 BAM aligned CPTAC3 6cf902ac-27a4-44fb-953f-67b943aa2f55 dad96fb599028850ddd7e553a747bd93 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02809.WGS.N.hg38 C3L-02809 PDA WGS blood_normal CPT0175500002 02d203d1-924c-4598-84b6-783ea0c1eeb6_wgs_gdc_realn.bam 88614212689 BAM harmonized CPTAC3 8fbeb5a7-7502-48ae-a274-8e597a32e1a2 e29e90610575e8efdb93918f9ab1aa51 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02809.WGS.T C3L-02809 PDA WGS tumor CPT0174700007 CPT0174700007.WholeGenome.RP-1303.bam 53215526725 BAM aligned CPTAC3 72f64b74-7d94-409b-a73c-02fe53cfa5a5 cf9fbed976ba2c9222d08030edc8f5a1 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.WGS.T.hg38 C3L-02809 PDA WGS tumor CPT0174700007 e4e0dade-f15e-493a-8390-0ed607e6e4bd_wgs_gdc_realn.bam 78997280733 BAM harmonized CPTAC3 16b73d61-fcb4-4a94-8701-8575c02551c2 177c9db43c15a9ab9bd457b4d9029c39 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.WXS.N C3L-02809 PDA WXS blood_normal CPT0175500002 CPT0175500002.WholeExome.RP-1303.bam 32086524469 BAM aligned CPTAC3 f14531b4-dd4e-46b8-9f3d-0292b0924ec7 997037ff24d02f9559387eecd035c868 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02809.WXS.N.hg38 C3L-02809 PDA WXS blood_normal CPT0175500002 02d203d1-924c-4598-84b6-783ea0c1eeb6_wxs_gdc_realn.bam 44662490694 BAM harmonized CPTAC3 943a11ee-ac73-4d2b-a82f-900e3899f5dc c5c7798320ddf37e2e53a154d3d67576 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02809.WXS.T C3L-02809 PDA WXS tumor CPT0174700007 CPT0174700007.WholeExome.RP-1303.bam 57542423279 BAM aligned CPTAC3 0ffadc6c-b191-47df-a1aa-a5d665cd2e57 650081413a20ae89b84085f4f7a77e3d {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02809.WXS.T.hg38 C3L-02809 PDA WXS tumor CPT0174700007 e4e0dade-f15e-493a-8390-0ed607e6e4bd_wxs_gdc_realn.bam 79863956148 BAM harmonized CPTAC3 8e7510eb-b1b6-4312-9c7e-428bce0f3205 c84341e9c0cff053a10fddac096c46b7 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor"} -C3L-02834.MethArray.Green.A C3L-02834 LUAD Methylation_Array tissue_normal CPT0174580007 203219670147_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 35c716c2-7551-4097-a2d4-24168cd74249 71c1d0e099ffe99f03c46de6c22e83be {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.MethArray.Green.T C3L-02834 LUAD Methylation_Array tumor CPT0174510006 203219670150_R05C01_Grn.idat 13676230 IDAT Green NA CPTAC3 83996f3d-b9b9-46de-97cd-da50e3bb884f 2ca76321d2b2dc18ffda749a03298c8d {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor"} -C3L-02834.MethArray.Red.A C3L-02834 LUAD Methylation_Array tissue_normal CPT0174580007 203219670147_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 d5372327-ccd9-4e83-8207-7e6913659f9a 62198434f1e2bfba47c8ca26f7b039b5 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.MethArray.Red.T C3L-02834 LUAD Methylation_Array tumor CPT0174510006 203219670150_R05C01_Red.idat 13676230 IDAT Red NA CPTAC3 61c26136-070e-45d6-8134-c96c3e459183 03a1374643aa404f5cd5ce0538514924 {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor"} -C3L-02834.miRNA-Seq.A.hg38 C3L-02834 LUAD miRNA-Seq tissue_normal CPT0174580010 8440718a-6af6-4007-a7a2-6c13323307f5_mirnaseq_gdc_realn.bam 221456857 BAM harmonized CPTAC3 338968c7-ffdd-4416-9ae7-33d41e737fd1 d588d7b8360843266c681dcc87cb7789 {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.miRNA-Seq.S39_L007_R1.T C3L-02834 LUAD miRNA-Seq tumor CPT0174510009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L007_R1_001.unaln.bam 202014826 BAM S39_L007_R1 unaligned CPTAC3 7daefd8f-98ef-4383-b603-f1675d90003d e52a3dc987e4b10c78549775660672e9 {"aliquot_tag": "ALQ_e5476623", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02834.miRNA-Seq.S9_L008_R1.A C3L-02834 LUAD miRNA-Seq tissue_normal CPT0174580010 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L008_R1_001.unaln.bam 200292653 BAM S9_L008_R1 unaligned CPTAC3 77b4a486-2cb3-417a-8e68-e3129be48c63 64200e5ec6fd2d543bc8b64bcb121f85 {"aliquot_tag": "ALQ_88908db7", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.miRNA-Seq.T.hg38 C3L-02834 LUAD miRNA-Seq tumor CPT0174510009 17f25ea0-e14f-41b4-b564-fdb3508f7697_mirnaseq_gdc_realn.bam 223875545 BAM harmonized CPTAC3 af7541c3-9cd9-4dd0-8d0b-634eadd0711b 3a2d81974099dc6dcf3fb0aad40bdf36 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor"} -C3L-02834.RNA-Seq.chimeric.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.chimeric.gdc_realn.bam 387311404 BAM chimeric harmonized CPTAC3 31022279-829f-4b3c-b68e-388e7ab81936 9b7913b348c6aed8253a31cc6388ffad {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.RNA-Seq.chimeric.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.chimeric.gdc_realn.bam 48330818 BAM chimeric harmonized CPTAC3 4b31fa1f-c3f2-4cdd-b54c-0e1ed41c8803 232eb2124bff32e406151f7bf6b55e37 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor"} -C3L-02834.RNA-Seq.genomic.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.genomic.gdc_realn.bam 9214493946 BAM genomic harmonized CPTAC3 b8d1b37a-103c-4b21-ba69-ea5625b85dcc 98765b4fdd86d37878f15f182a64f18f {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.RNA-Seq.genomic.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.genomic.gdc_realn.bam 9396104893 BAM genomic harmonized CPTAC3 b316ef0f-0ff3-47e6-8ba8-e2ca0f6ac8f9 fc1b1728ae1645912ce2041b5814d273 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor"} -C3L-02834.RNA-Seq.S11_L003_R1.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R1_001.fastq.gz 4370391562 FASTQ S11_L003_R1 unaligned CPTAC3 ca9740e8-4c6a-4035-afd7-ce31585fec56 ca6885a74642b28643253c8553d48eba {"aliquot_tag": "ALQ_e5476623", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02834.RNA-Seq.S11_L003_R2.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R2_001.fastq.gz 4653988220 FASTQ S11_L003_R2 unaligned CPTAC3 c1914d5e-4cd1-44d7-b9d3-c8bcb774dbbf 4605ed4fbedfc230f1db8d3ec8b5a473 {"aliquot_tag": "ALQ_e5476623", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02834.RNA-Seq.S1_L008_R1.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R1_001.fastq.gz 3954910237 FASTQ S1_L008_R1 unaligned CPTAC3 2e99d1c7-3e0e-4254-8f2f-f01ee5156a9f 6d3a94e472178e7d6d368c2bf1b7ad52 {"aliquot_tag": "ALQ_88908db7", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.RNA-Seq.S1_L008_R2.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R2_001.fastq.gz 4399984770 FASTQ S1_L008_R2 unaligned CPTAC3 d6d03f11-4a9f-4e92-9da3-c5941b2bfaa5 73a0f155282ce4fd5d46916b4be237ec {"aliquot_tag": "ALQ_88908db7", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.RNA-Seq.transcriptome.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.transcriptome.gdc_realn.bam 9600305533 BAM transcriptome harmonized CPTAC3 c940144e-af2e-4074-bf7d-76d0fcaa85ec 45fb81a05890b24409869c10bacf3e00 {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.RNA-Seq.transcriptome.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.transcriptome.gdc_realn.bam 10612072010 BAM transcriptome harmonized CPTAC3 bdf6c334-ece0-460a-b138-0b8b0e356f15 ed1a9b800083356bbe9ee9c5e51e5123 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor"} -C3L-02834.WGS.A C3L-02834 LUAD WGS tissue_normal CPT0174580007 CPT0174580007.WholeGenome.RP-1303.bam 61304027006 BAM aligned CPTAC3 eae7b4ce-2ae2-42aa-ae85-6c2443d6e4dd 3877a7b680db8c4814d4e0b139fb13e2 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.WGS.A.hg38 C3L-02834 LUAD WGS tissue_normal CPT0174580007 a5d3e17e-9986-4f1f-a853-6c740289e7b1_wgs_gdc_realn.bam 90943543429 BAM harmonized CPTAC3 733b2978-7e71-4d6b-91de-c4d6b485247a ebf2a268540e4190de56fb3c1ec82f97 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.WGS.N C3L-02834 LUAD WGS blood_normal CPT0175490002 CPT0175490002.WholeGenome.RP-1303.bam 63488874561 BAM aligned CPTAC3 cf36d3bf-b9d6-4128-8272-74df480369d4 bf7b790085186228a5bb532e920256b9 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02834.WGS.N.hg38 C3L-02834 LUAD WGS blood_normal CPT0175490002 46492e5c-fc4c-4807-bde0-27bd01c6e076_wgs_gdc_realn.bam 92195116366 BAM harmonized CPTAC3 fe611e6d-3dfc-4a93-9732-1546b7b5748a cfca6fd1e634f86e22eb14de7a51b3c9 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02834.WGS.T C3L-02834 LUAD WGS tumor CPT0174510006 CPT0174510006.WholeGenome.RP-1303.bam 57060876240 BAM aligned CPTAC3 0e30c0e7-573d-479f-a6f0-c57f70426ce1 28303b401d1ab87ae54cae103bbd2a1c {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor"} -C3L-02834.WGS.T.hg38 C3L-02834 LUAD WGS tumor CPT0174510006 8dda95f2-4b55-4a5e-9d05-9a98edfbc18a_wgs_gdc_realn.bam 83381846311 BAM harmonized CPTAC3 63adefb8-13ab-4ac6-b0d0-c5ae7b55a707 81b57f5e10e292d321e59803270b10fd {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor"} -C3L-02834.WXS.A C3L-02834 LUAD WXS tissue_normal CPT0174580007 CPT0174580007.WholeExome.RP-1303.bam 20043024342 BAM aligned CPTAC3 777b90c4-bc73-42c6-985d-aa667132bb36 1de7d0bd3c105b5fbe91a6df557a921d {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.WXS.A.hg38 C3L-02834 LUAD WXS tissue_normal CPT0174580007 a5d3e17e-9986-4f1f-a853-6c740289e7b1_wxs_gdc_realn.bam 28380008485 BAM harmonized CPTAC3 4625d458-c04b-4592-bf82-a1eadcf44548 21865a53073679a6ce948ad4853fa8a7 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02834.WXS.N C3L-02834 LUAD WXS blood_normal CPT0175490002 CPT0175490002.WholeExome.RP-1303.bam 27202451705 BAM aligned CPTAC3 2f285552-8739-48e2-b2f8-de2888c7b88c c84740aa133cf3bf35d77fb327362262 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02834.WXS.N.hg38 C3L-02834 LUAD WXS blood_normal CPT0175490002 46492e5c-fc4c-4807-bde0-27bd01c6e076_wxs_gdc_realn.bam 38361451146 BAM harmonized CPTAC3 02884bf9-19df-4592-b58d-05a50a2c957a 429a98fe53d2c2897d9149973daad575 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal"} -C3L-02834.WXS.T C3L-02834 LUAD WXS tumor CPT0174510006 CPT0174510006.WholeExome.RP-1303.bam 22173742227 BAM aligned CPTAC3 a227840d-d7a9-49b9-8e52-1ceb51976522 db31b31b257b98692aae214b4ae680ee {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor"} -C3L-02834.WXS.T.hg38 C3L-02834 LUAD WXS tumor CPT0174510006 8dda95f2-4b55-4a5e-9d05-9a98edfbc18a_wxs_gdc_realn.bam 30131077957 BAM harmonized CPTAC3 5797ae05-0425-441f-b89a-2049618fb296 e0017742bc19a9dc0c2e307f436e89cb {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor"} -C3L-02841.MethArray.Green.T C3L-02841 CCRCC Methylation_Array tumor CPT0172130006 203219650165_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f65bf0fe-defc-4a90-a0b6-693c58dd52aa 02385afcc36f752d97d533c7c68a213d {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor"} -C3L-02841.MethArray.Red.T C3L-02841 CCRCC Methylation_Array tumor CPT0172130006 203219650165_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 d2892acf-73e6-42de-9e1f-19acf055f9ba 44e2698ac8c9a3e06397c9a5ee6ee5e0 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor"} -C3L-02841.miRNA-Seq.A.hg38 C3L-02841 CCRCC miRNA-Seq tissue_normal CPT0172140006 38052566-34b3-40c4-ae5c-3734fe942c71_mirnaseq_gdc_realn.bam 182116204 BAM harmonized CPTAC3 e20dc903-37c0-49f3-984c-5e060622077a c1cf7585c35934f1e408ba68c0658ba7 {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02841.miRNA-Seq.S27_L004_R1.T C3L-02841 CCRCC miRNA-Seq tumor CPT0172130009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L004_R1_001.unaln.bam 182321424 BAM S27_L004_R1 unaligned CPTAC3 545b336f-9b87-4343-a117-02c29d886fdb f0da83d9f23788e00b5e8299f3dd2415 {"aliquot_tag": "ALQ_67c6426f", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02841.miRNA-Seq.S6_L004_R1.A C3L-02841 CCRCC miRNA-Seq tissue_normal CPT0172140006 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L004_R1_001.unaln.bam 164089689 BAM S6_L004_R1 unaligned CPTAC3 7e3da979-16ef-4f01-b9c1-5be3d8e2a26d 80813c5d1e542ca7684df5ba29d3b132 {"aliquot_tag": "ALQ_455983ee", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02841.miRNA-Seq.T.hg38 C3L-02841 CCRCC miRNA-Seq tumor CPT0172130009 82431e1b-8340-4256-947f-6daa0abfaa92_mirnaseq_gdc_realn.bam 202353370 BAM harmonized CPTAC3 e15a228c-c968-431b-ba58-53857085779c adb4dbbe9e394303b3bfb7917b8bbaee {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor"} -C3L-02841.RNA-Seq.chimeric.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.chimeric.gdc_realn.bam 29806171 BAM chimeric harmonized CPTAC3 98209cd8-f511-4e54-98d0-a91a51d01772 52a467f7c75f26d46df8981b1c8e7a48 {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02841.RNA-Seq.chimeric.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.chimeric.gdc_realn.bam 34051767 BAM chimeric harmonized CPTAC3 fb8a1543-8c3e-4513-8c32-db453a5cc3d5 86d59a0b211b60a86419d686d574ce6f {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor"} -C3L-02841.RNA-Seq.genomic.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.genomic.gdc_realn.bam 8239318740 BAM genomic harmonized CPTAC3 708bf3da-6066-4e58-927f-116e1b25cc86 993c4236bc4068c740d270cde63a73ab {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02841.RNA-Seq.genomic.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.genomic.gdc_realn.bam 7143477463 BAM genomic harmonized CPTAC3 2b0be062-44cb-439e-b588-217817002c91 409253b1daa1c86465d5497e30635f67 {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor"} -C3L-02841.RNA-Seq.S16_L004_R1.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3469919066 FASTQ S16_L004_R1 unaligned CPTAC3 01d54fce-f4a5-47a9-9a27-ddf74b6ca8e5 c6ce8b71da37f067d1cfce7fd5ba4fcf {"aliquot_tag": "ALQ_67c6426f", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02841.RNA-Seq.S16_L004_R2.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3722604381 FASTQ S16_L004_R2 unaligned CPTAC3 8935e95e-88af-4eaa-8c82-5b88b21674e8 f5ed52bcc03136daee7ed2d13a048dd6 {"aliquot_tag": "ALQ_67c6426f", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02841.RNA-Seq.S5_L008_R1.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3515107282 FASTQ S5_L008_R1 unaligned CPTAC3 447373ad-15f4-4850-ba3c-1ddb67176f37 14e31b849c6a9a37b45cba3f22583c33 {"aliquot_tag": "ALQ_455983ee", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02841.RNA-Seq.S5_L008_R2.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3679801234 FASTQ S5_L008_R2 unaligned CPTAC3 42bdd267-ddb8-49bd-b1b5-be4ea00eab1c 3bc95e418ab7c5e71efe995a02ccd45b {"aliquot_tag": "ALQ_455983ee", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02841.RNA-Seq.transcriptome.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.transcriptome.gdc_realn.bam 8662194785 BAM transcriptome harmonized CPTAC3 6aee807c-6115-4dbd-b347-4a5905c71b2e 5d14a4a4c7eb3dea7551534f75ea25af {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02841.RNA-Seq.transcriptome.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.transcriptome.gdc_realn.bam 10376938644 BAM transcriptome harmonized CPTAC3 25bb04e1-e955-4f27-9bfe-c311bff3a0f2 a02aaa75e41f1d857f446f0c626a73ff {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor"} -C3L-02841.WGS.N C3L-02841 CCRCC WGS blood_normal CPT0167390002 CPT0167390002.WholeGenome.RP-1303.bam 73061470291 BAM aligned CPTAC3 71903efc-bc86-4da5-b185-57dc7b96f414 b8168ac3b32b7ff8b99b360d2757eaf3 {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal"} -C3L-02841.WGS.N.hg38 C3L-02841 CCRCC WGS blood_normal CPT0167390002 91d0d200-7564-493e-8067-1a11dee04ea6_wgs_gdc_realn.bam 108598721635 BAM harmonized CPTAC3 5793de14-57c8-429c-b5af-1fa15e75b752 72029a65dbaa79e5f3b4b7e8e9794e1a {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal"} -C3L-02841.WGS.T C3L-02841 CCRCC WGS tumor CPT0172130006 CPT0172130006.WholeGenome.RP-1303.bam 61235981082 BAM aligned CPTAC3 ab37ae3b-0198-45cc-a6e2-035ac1a207da 68885fe161fa3c639aa5664361293cb3 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor"} -C3L-02841.WGS.T.hg38 C3L-02841 CCRCC WGS tumor CPT0172130006 505c63bd-d739-4d95-900d-bbb3a3f3fb58_wgs_gdc_realn.bam 89987217655 BAM harmonized CPTAC3 5109ae77-cc40-4d86-8c64-2815e98a8e7e 600e2b049608edc91ec8aa29f9c37c0b {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor"} -C3L-02841.WXS.N C3L-02841 CCRCC WXS blood_normal CPT0167390002 CPT0167390002.WholeExome.RP-1303.bam 29009901663 BAM aligned CPTAC3 a29924c2-db66-4c42-8044-30baaf37ca4c 45690665e923e56cbf750f6dee10a37a {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal"} -C3L-02841.WXS.N.hg38 C3L-02841 CCRCC WXS blood_normal CPT0167390002 91d0d200-7564-493e-8067-1a11dee04ea6_wxs_gdc_realn.bam 40298975960 BAM harmonized CPTAC3 ebbe4f82-443d-45a6-95a1-5b51f3628f89 bb1922be1886d2d8c46566f86475e2ca {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal"} -C3L-02841.WXS.T C3L-02841 CCRCC WXS tumor CPT0172130006 CPT0172130006.WholeExome.RP-1303.bam 21473160014 BAM aligned CPTAC3 3868a2a1-bd32-4db0-8903-3a1b7ae75b9b e46e58c7c0f1b13c7b81de9c1fe00211 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor"} -C3L-02841.WXS.T.hg38 C3L-02841 CCRCC WXS tumor CPT0172130006 505c63bd-d739-4d95-900d-bbb3a3f3fb58_wxs_gdc_realn.bam 28961019642 BAM harmonized CPTAC3 7683f996-e387-43d5-bc9e-c111647a8c0a ab310ccf83394aca0ebe87f520de6822 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor"} -C3L-02842.MethArray.Green.A C3L-02842 CCRCC Methylation_Array tissue_normal CPT0172080006 204930630111_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 64b7de48-3648-4e90-b0ae-a16f2a8d492a 8b1f8141b45f3a33a1a23a6d41d2ea90 {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.MethArray.Green.T C3L-02842 CCRCC Methylation_Array tumor CPT0172070006 203219650177_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 95c55306-ccd2-4f51-84c2-bad9146ef6ce 8f233faece069bf80bd3c2bc675de240 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor"} -C3L-02842.MethArray.Red.A C3L-02842 CCRCC Methylation_Array tissue_normal CPT0172080006 204930630111_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 9a70884c-a7ba-4454-bc54-e6fbc54a758e 7f8364fbe566afc0775ef7e311de3e97 {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.MethArray.Red.T C3L-02842 CCRCC Methylation_Array tumor CPT0172070006 203219650177_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 c6ab9374-3405-49f9-abbb-d6b5c2f12ee0 7aeba3045928353f3af90449a05d125e {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor"} -C3L-02842.miRNA-Seq.A.hg38 C3L-02842 CCRCC miRNA-Seq tissue_normal CPT0172080009 9b5ec0cd-3264-44b0-9d2a-3aa821effcf8_mirnaseq_gdc_realn.bam 173341579 BAM harmonized CPTAC3 21a9e2a8-286e-4b59-b16e-701f2ee3d097 c334a7d832dc1946b1c3644d51aad27d {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.miRNA-Seq.S26_L004_R1.T C3L-02842 CCRCC miRNA-Seq tumor CPT0172070009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L004_R1_001.unaln.bam 277817742 BAM S26_L004_R1 unaligned CPTAC3 4b0a3c57-383c-46bb-8731-2f0da8dfe2ad f28801b3be1a57eb92f46129de2dc8c0 {"aliquot_tag": "ALQ_591a370a", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02842.miRNA-Seq.S34_L003_R1.A C3L-02842 CCRCC miRNA-Seq tissue_normal CPT0172080009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L003_R1_001.unaln.bam 157041684 BAM S34_L003_R1 unaligned CPTAC3 b21b27b7-ff51-4c95-9057-9876e4e29d2d 1314911ab80b307c0503551618c2859b {"aliquot_tag": "ALQ_db4aa0db", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.miRNA-Seq.T.hg38 C3L-02842 CCRCC miRNA-Seq tumor CPT0172070009 f9233265-2619-45cf-8db3-0f7bea172b3b_mirnaseq_gdc_realn.bam 307695074 BAM harmonized CPTAC3 fc590504-92fb-4fc1-a300-2ca658bda64f 74311be64684e416ebeed24c443fc206 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor"} -C3L-02842.RNA-Seq.chimeric.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.chimeric.gdc_realn.bam 47019011 BAM chimeric harmonized CPTAC3 84eb3f7a-34d2-4035-bd5b-dc6e4995b945 1375cc22b309f2392861304e090fd61c {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.RNA-Seq.chimeric.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.chimeric.gdc_realn.bam 39676476 BAM chimeric harmonized CPTAC3 f907e8c9-c890-43b1-b202-e61ac69da378 71d98b77ea0ffcc8bb92f4623e7da147 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor"} -C3L-02842.RNA-Seq.genomic.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.genomic.gdc_realn.bam 7361108647 BAM genomic harmonized CPTAC3 0ed99de7-9826-432b-bac4-8f252a75a722 2358acdf9925a9a65b60ffb6080ce75a {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.RNA-Seq.genomic.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.genomic.gdc_realn.bam 7540375510 BAM genomic harmonized CPTAC3 61cce980-4eb9-4ccc-a0f9-fc2ea8d75987 071b88850e18864de04838623bc55517 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor"} -C3L-02842.RNA-Seq.S13_L004_R1.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3720502492 FASTQ S13_L004_R1 unaligned CPTAC3 9982f9c9-86e3-44aa-9e18-8a8fcd3f7809 39a4fe47e4423507a54373e1364a2305 {"aliquot_tag": "ALQ_591a370a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02842.RNA-Seq.S13_L004_R2.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3959952511 FASTQ S13_L004_R2 unaligned CPTAC3 2471fd79-72a9-4851-a843-966ed61cc81d d46cc7941897cf74f379025b09137954 {"aliquot_tag": "ALQ_591a370a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02842.RNA-Seq.S18_L007_R1.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R1_001.fastq.gz 3397109312 FASTQ S18_L007_R1 unaligned CPTAC3 992b3f55-0b5f-465e-986b-8cb01c7bba0e ce0cb6df03db23ac8d9767b6f68ac62d {"aliquot_tag": "ALQ_db4aa0db", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.RNA-Seq.S18_L007_R2.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R2_001.fastq.gz 3571857899 FASTQ S18_L007_R2 unaligned CPTAC3 d064b70a-12fe-4952-a3b6-1f323fb6321d f2c089f8a91e7e258a4bb1b323c61bdc {"aliquot_tag": "ALQ_db4aa0db", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.RNA-Seq.transcriptome.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.transcriptome.gdc_realn.bam 8412536816 BAM transcriptome harmonized CPTAC3 2b77cebb-b475-4429-8d73-e9aaea936d2f aad2a809dc8ffd167eb7f3da8464089b {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.RNA-Seq.transcriptome.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.transcriptome.gdc_realn.bam 10353697231 BAM transcriptome harmonized CPTAC3 c655d0dc-9c7a-4d97-b8ae-21f93a544202 02534423e541ff792713e16a0fb0ff09 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor"} -C3L-02842.WGS.A C3L-02842 CCRCC WGS tissue_normal CPT0172080006 CPT0172080006.WholeGenome.RP-1303.bam 51783724928 BAM aligned CPTAC3 8ed8c59d-a5fb-486b-b8db-70f5dedb04b8 b8829a646adc2b18ef672bd9f635f661 {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.WGS.A.hg38 C3L-02842 CCRCC WGS tissue_normal CPT0172080006 f19c25ee-1228-4e75-ab14-b2bb89853fa4_wgs_gdc_realn.bam 76304620036 BAM harmonized CPTAC3 5275f29c-239d-4516-b35f-644ce2f842eb 3bae29da9646950cd347d6e27bf70b1a {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.WGS.N C3L-02842 CCRCC WGS blood_normal CPT0167410002 CPT0167410002.WholeGenome.RP-1303.bam 57344887018 BAM aligned CPTAC3 21eb25a5-833f-4968-99c4-a2c3ce434938 fbec0d428f8b5aba45df17450d2ae941 {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02842.WGS.N.hg38 C3L-02842 CCRCC WGS blood_normal CPT0167410002 1e2b050b-36cf-427e-bb7e-2ee2a52ae5bf_wgs_gdc_realn.bam 84070280600 BAM harmonized CPTAC3 7ef5fe97-4b43-4ec4-9142-14d5f68f4e04 42e57da62770bd08d587c0d4e8bdafc4 {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02842.WGS.T C3L-02842 CCRCC WGS tumor CPT0172070006 CPT0172070006.WholeGenome.RP-1303.bam 61580272973 BAM aligned CPTAC3 543397b9-616b-48a6-af65-4d020448eb52 a2c77104d60e9267fbb6d328a3cfa85c {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor"} -C3L-02842.WGS.T.hg38 C3L-02842 CCRCC WGS tumor CPT0172070006 f022c77d-0ec6-4c9a-9933-eb5a5ab80b6f_wgs_gdc_realn.bam 88736390102 BAM harmonized CPTAC3 3d054d78-e97f-4ffe-9dca-29610288e6ba e411d157e24f3a4f4663fb6ed67af889 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor"} -C3L-02842.WXS.A C3L-02842 CCRCC WXS tissue_normal CPT0172080006 CPT0172080006.WholeExome.RP-1303.bam 26570792350 BAM aligned CPTAC3 f62985fd-69f8-4ec6-bac2-a97ad4d9fa8c ffa7e115a56d2622b2207ea0538472da {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.WXS.A.hg38 C3L-02842 CCRCC WXS tissue_normal CPT0172080006 f19c25ee-1228-4e75-ab14-b2bb89853fa4_wxs_gdc_realn.bam 36533736826 BAM harmonized CPTAC3 2038f781-6bc7-4ca3-8473-b489706d856c 1543d717c475b329ab986922b7337d5d {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02842.WXS.N C3L-02842 CCRCC WXS blood_normal CPT0167410002 CPT0167410002.WholeExome.RP-1303.bam 26466694050 BAM aligned CPTAC3 13f2dc79-0ad7-45eb-8cb3-54c4e75b0f89 90f32617f6ece6cfea34cf2cdf9990ce {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02842.WXS.N.hg38 C3L-02842 CCRCC WXS blood_normal CPT0167410002 1e2b050b-36cf-427e-bb7e-2ee2a52ae5bf_wxs_gdc_realn.bam 36467996628 BAM harmonized CPTAC3 87876dcf-69d9-455c-b626-3323db8616bb acce1b1ddfb88c940ee5b3277565d5bb {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal"} -C3L-02842.WXS.T C3L-02842 CCRCC WXS tumor CPT0172070006 CPT0172070006.WholeExome.RP-1303.bam 18546446650 BAM aligned CPTAC3 311c5e04-e5be-41c9-8ee0-1c4fa1931d8a 496f8da26bda4f96c48ba110fbf08456 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor"} -C3L-02842.WXS.T.hg38 C3L-02842 CCRCC WXS tumor CPT0172070006 f022c77d-0ec6-4c9a-9933-eb5a5ab80b6f_wxs_gdc_realn.bam 26118880493 BAM harmonized CPTAC3 7d4b7945-10ec-4bd4-84f6-b2d1419b8a38 9ef637a9c584fa40ac0ae4839e866702 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor"} -C3L-02856.MethArray.Green.T C3L-02856 CCRCC Methylation_Array tumor CPT0172010006 203219670019_R04C01_Grn.idat 13676232 IDAT Green NA CPTAC3 c0bb070a-45fb-4132-bd24-ed6004ebb0db 7ff9f2e91def107e9b0a22cf6ca7fcca {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor"} -C3L-02856.MethArray.Red.T C3L-02856 CCRCC Methylation_Array tumor CPT0172010006 203219670019_R04C01_Red.idat 13676232 IDAT Red NA CPTAC3 7fe9204a-9f10-4f8b-b49f-5cd21569ba39 e93dccc762d99d795cd73860ec784fd7 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor"} -C3L-02856.miRNA-Seq.S25_L004_R1.T C3L-02856 CCRCC miRNA-Seq tumor CPT0172010009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L004_R1_001.unaln.bam 224701599 BAM S25_L004_R1 unaligned CPTAC3 566f248e-f000-4f48-b825-40daab7ef0a1 e62531f807482fc220a8361857ae52c4 {"aliquot_tag": "ALQ_d65ac2aa", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02856.miRNA-Seq.T.hg38 C3L-02856 CCRCC miRNA-Seq tumor CPT0172010009 89866b63-d94b-4720-b380-3f9f27c4cc17_mirnaseq_gdc_realn.bam 248300800 BAM harmonized CPTAC3 f69b63fc-516b-46ec-8341-b8770fdc09bf 3e7034ca650f5d8e0cb1b50114d5317f {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor"} -C3L-02856.RNA-Seq.chimeric.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.chimeric.gdc_realn.bam 25066005 BAM chimeric harmonized CPTAC3 15c44828-2a38-4085-b8ed-b54fd25b315c 4f9fd650dea3b216d60e1eb991568121 {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor"} -C3L-02856.RNA-Seq.genomic.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.genomic.gdc_realn.bam 6392583130 BAM genomic harmonized CPTAC3 c5b03a2c-d4fc-4da8-b823-d1360c687157 875d92a6758e783d9a02a06ccf6c8ba2 {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor"} -C3L-02856.RNA-Seq.S14_L004_R1.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3087194892 FASTQ S14_L004_R1 unaligned CPTAC3 a746a03f-1a50-44a4-ada0-5f47d9a2b405 933662ba5273a8dbe59dc3aa964518a6 {"aliquot_tag": "ALQ_d65ac2aa", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02856.RNA-Seq.S14_L004_R2.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3343909402 FASTQ S14_L004_R2 unaligned CPTAC3 702e2897-0c49-4b97-a837-320a7908430d 80977eeeb160efb6a0b1d53e462d8538 {"aliquot_tag": "ALQ_d65ac2aa", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02856.RNA-Seq.transcriptome.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.transcriptome.gdc_realn.bam 9003440335 BAM transcriptome harmonized CPTAC3 be4b3b34-322b-4973-b506-a99ae49dd8ea aff4aec35ae0526163a5cf6873444c23 {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor"} -C3L-02856.WGS.N C3L-02856 CCRCC WGS blood_normal CPT0167470002 CPT0167470002.WholeGenome.RP-1303.bam 59056080805 BAM aligned CPTAC3 a372d668-dddb-41eb-9202-88cf63c5041c d3d9a5a85aee1646a7550df023bf4cba {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal"} -C3L-02856.WGS.N.hg38 C3L-02856 CCRCC WGS blood_normal CPT0167470002 e833a430-f9c4-405f-a646-a54f3065fd43_wgs_gdc_realn.bam 85861686845 BAM harmonized CPTAC3 5d7a4913-bbc3-4732-ab0f-47c5a90cf3bf 017e68fac45289860294ac8e829bd816 {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal"} -C3L-02856.WGS.T C3L-02856 CCRCC WGS tumor CPT0172010006 CPT0172010006.WholeGenome.RP-1303.bam 54012441219 BAM aligned CPTAC3 691b6533-911c-4dd8-8a27-8677dfc311ca 6b23bcdcdc1699814c454b764e890741 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor"} -C3L-02856.WGS.T.hg38 C3L-02856 CCRCC WGS tumor CPT0172010006 46f53495-9f86-4bea-91a0-4ad98cad7612_wgs_gdc_realn.bam 80505494945 BAM harmonized CPTAC3 b3a7cfae-79bd-4d4b-b67e-32224cbfce40 ffdd239f4befbf8e0e63b14793934094 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor"} -C3L-02856.WXS.N C3L-02856 CCRCC WXS blood_normal CPT0167470002 CPT0167470002.WholeExome.RP-1303.bam 29316677542 BAM aligned CPTAC3 048af670-80a9-4781-a72d-0baddd38ebf0 39e5c1d1ba45337283ae1bf890c95fe1 {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal"} -C3L-02856.WXS.N.hg38 C3L-02856 CCRCC WXS blood_normal CPT0167470002 e833a430-f9c4-405f-a646-a54f3065fd43_wxs_gdc_realn.bam 40591545870 BAM harmonized CPTAC3 95260747-c8f7-4be5-802b-9603eba2270e 20d087546e923589175021f59d79c113 {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal"} -C3L-02856.WXS.T C3L-02856 CCRCC WXS tumor CPT0172010006 CPT0172010006.WholeExome.RP-1303.bam 23256877853 BAM aligned CPTAC3 b61ef51a-1c9e-4813-9143-6fc71d523cbc 44d87c4ee6fe4dcc804935db18977349 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor"} -C3L-02856.WXS.T.hg38 C3L-02856 CCRCC WXS tumor CPT0172010006 46f53495-9f86-4bea-91a0-4ad98cad7612_wxs_gdc_realn.bam 31951025577 BAM harmonized CPTAC3 2b7a975c-464c-4077-8bb7-124ab81b3bf5 4e7e0f075c70ca65366ac499972542c1 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor"} -C3L-02857.MethArray.Green.T C3L-02857 CCRCC Methylation_Array tumor CPT0203410006 203219650005_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1c64ffda-bdc5-4e96-9fcd-ea3b3d4f5608 31d48910dffb0d12cdbec5a98d422d6f {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor"} -C3L-02857.MethArray.Red.T C3L-02857 CCRCC Methylation_Array tumor CPT0203410006 203219650005_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5a60b667-f500-4a5b-aeac-edae0856036f e793f8a746a6cac4ba7a6cbab6a25dff {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor"} -C3L-02857.miRNA-Seq.S1_L008_R1.T C3L-02857 CCRCC miRNA-Seq tumor CPT0203410009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L008_R1_001.unaln.bam 209231424 BAM S1_L008_R1 unaligned CPTAC3 6e7313a5-bbcb-4b30-b15e-e70186af716f c561d06563a2171eacb743b9bb42ef40 {"aliquot_tag": "ALQ_d8f4bed4", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02857.miRNA-Seq.T.hg38 C3L-02857 CCRCC miRNA-Seq tumor CPT0203410009 ea154adb-92e7-4d50-a983-77be2aca9795_mirnaseq_gdc_realn.bam 232256779 BAM harmonized CPTAC3 2206a5f5-219c-4294-9adf-44b09de93968 89c05114a71fd0561da8bab62c64638d {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor"} -C3L-02857.RNA-Seq.chimeric.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.chimeric.gdc_realn.bam 361228727 BAM chimeric harmonized CPTAC3 95aa5cb9-389a-4088-a49f-36181f16ca76 fb7269168abddc56c81723b1305e758c {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor"} -C3L-02857.RNA-Seq.genomic.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.genomic.gdc_realn.bam 9225835659 BAM genomic harmonized CPTAC3 56b9b3a0-1932-4c23-8999-e53bf4cd56d6 7ee4cf4f23c345f2b563641d52a0ae07 {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor"} -C3L-02857.RNA-Seq.S9_L004_R1.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R1_001.fastq.gz 4101518275 FASTQ S9_L004_R1 unaligned CPTAC3 6dd28258-5f77-4e85-9297-1d405436765a c49dccd9dfc7803c7eaa1e908dd83dbd {"aliquot_tag": "ALQ_d8f4bed4", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02857.RNA-Seq.S9_L004_R2.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R2_001.fastq.gz 4549844513 FASTQ S9_L004_R2 unaligned CPTAC3 8ab6cb44-ccad-44f8-bd2b-c957583135ce c885ed4dafe6c5fb963a7711871aea03 {"aliquot_tag": "ALQ_d8f4bed4", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02857.RNA-Seq.transcriptome.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.transcriptome.gdc_realn.bam 11335636830 BAM transcriptome harmonized CPTAC3 12182f4c-479f-46d1-80dc-160a8f135104 09f72a870c93671381633fb6738eabeb {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor"} -C3L-02857.WGS.N C3L-02857 CCRCC WGS blood_normal CPT0204060002 CPT0204060002.WholeGenome.RP-1303.bam 60349604247 BAM aligned CPTAC3 5cae61e7-2224-49d3-8bb9-190e6e160b50 b74e1705c949f864a2ed0458ea8f837a {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02857.WGS.N.hg38 C3L-02857 CCRCC WGS blood_normal CPT0204060002 3f93cb69-6a59-4f4a-a5f2-fe98ebf17dd0_wgs_gdc_realn.bam 88772387758 BAM harmonized CPTAC3 db2769fc-ee10-41a5-8131-5c2a8ca155b4 a40e4e6cc83a9334aea64f35fb61b946 {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02857.WGS.T C3L-02857 CCRCC WGS tumor CPT0203410006 CPT0203410006.WholeGenome.RP-1303.bam 64372151386 BAM aligned CPTAC3 6fa596a4-afce-4dc1-82d4-4b4ad146a506 64168711b8662983d56fc2e98bc61712 {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor"} -C3L-02857.WGS.T.hg38 C3L-02857 CCRCC WGS tumor CPT0203410006 fffbf591-33c9-45e6-868a-9b7ec881d315_wgs_gdc_realn.bam 95240597975 BAM harmonized CPTAC3 1363a8d9-d260-463b-84fa-54e9e34b1b9d 885ecef1e00e13bdf9410f86eba8bd2d {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor"} -C3L-02857.WXS.N C3L-02857 CCRCC WXS blood_normal CPT0204060002 CPT0204060002.WholeExome.RP-1303.bam 18840776459 BAM aligned CPTAC3 dd9417cc-8076-4486-8de2-cba83e35bd51 e1d68d096f12bbb81b10b09fa1529ac9 {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02857.WXS.N.hg38 C3L-02857 CCRCC WXS blood_normal CPT0204060002 3f93cb69-6a59-4f4a-a5f2-fe98ebf17dd0_wxs_gdc_realn.bam 25851946346 BAM harmonized CPTAC3 af99eac9-ea5a-4e28-a8b0-8812d904bda4 1d2a4a3b24e362c58564b7bb4d6278d4 {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal"} -C3L-02857.WXS.T C3L-02857 CCRCC WXS tumor CPT0203410006 CPT0203410006.WholeExome.RP-1303.bam 29954298793 BAM aligned CPTAC3 6d00c072-dfb5-4f05-afae-44005dfe9be9 bbe0ad2ae3365f75e14d4747163069c0 {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor"} -C3L-02857.WXS.T.hg38 C3L-02857 CCRCC WXS tumor CPT0203410006 fffbf591-33c9-45e6-868a-9b7ec881d315_wxs_gdc_realn.bam 41745966797 BAM harmonized CPTAC3 91d96a04-c7f3-4a2c-bfed-41e8e2b86436 d5fdd96c1542f4c574fc51ebd014e821 {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor"} -C3L-02858.MethArray.Green.T C3L-02858 CCRCC Methylation_Array tumor CPT0389160006 205589730156_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 abf35736-d279-4564-85d3-341f27e3be6e 4fcb547f3b2942ee5d8a860feaf15c29 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor"} -C3L-02858.MethArray.Red.T C3L-02858 CCRCC Methylation_Array tumor CPT0389160006 205589730156_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 cb062325-65e5-4d62-b57c-6f1ebe268477 c5d67379471768a229e4cc7e46c8da58 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor"} -C3L-02858.miRNA-Seq.S19_L001_R1.T C3L-02858 CCRCC miRNA-Seq tumor CPT0389160009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTTTCG_S19_L001_R1_001.unaln.bam 270092493 BAM S19_L001_R1 unaligned CPTAC3 ac3ceeed-a6a1-4c9a-b151-1e15a30cb131 593e3d2d59658c716fc536b1e8df0024 {"aliquot_tag": "ALQ_5af7a3cf", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02858.miRNA-Seq.T.hg38 C3L-02858 CCRCC miRNA-Seq tumor CPT0389160009 ca65ab18-0f28-4a2c-8aa7-5858314f5204_mirnaseq_gdc_realn.bam 295062336 BAM harmonized CPTAC3 9f20edf5-30b6-45e9-b83c-0b702bf07fc3 2a48c37a262b280e10d6cccb90ae16d0 {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor"} -C3L-02858.RNA-Seq.chimeric.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.chimeric.gdc_realn.bam 398460299 BAM chimeric harmonized CPTAC3 a6b61a06-d0a1-4d6e-bb28-2e8b45a4d3db 1e2745a55ad6072ec622ca85965c561f {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor"} -C3L-02858.RNA-Seq.genomic.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.genomic.gdc_realn.bam 8129284436 BAM genomic harmonized CPTAC3 eef655d7-3a9a-4514-a0f1-1ac74d4b0df9 1e4031453e1f5b5e0bc00288037f637a {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor"} -C3L-02858.RNA-Seq.S16_L004_R1.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R1_001.fastq.gz 3869705493 FASTQ S16_L004_R1 unaligned CPTAC3 52d3a301-352c-448f-aad0-95a62e05dc6e 7e10c430f87c49bcddc8ff248a47c1fb {"aliquot_tag": "ALQ_5af7a3cf", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02858.RNA-Seq.S16_L004_R2.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R2_001.fastq.gz 4315068548 FASTQ S16_L004_R2 unaligned CPTAC3 168c8828-aaec-4ae0-9dd6-3b90f6b0972a 787169beb09d846a2719508211c584e7 {"aliquot_tag": "ALQ_5af7a3cf", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02858.RNA-Seq.transcriptome.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.transcriptome.gdc_realn.bam 10178195314 BAM transcriptome harmonized CPTAC3 6d04e6b6-ec5e-4129-bc12-481337b9b59b 33fc2414f5d3ed294ac47a793d6cfb5a {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor"} -C3L-02858.scRNA-Seq.S2_L003_R1.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S2_L003_R1_001.fastq.gz 4217981886 FASTQ S2_L003_R1 unaligned CPTAC3 9ad559ec-11b2-495d-b35b-b6062981259a ef09102d5ac8e9096915caf7c7772524 {"aliquot_tag": "ALQ_2446df72", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02858.scRNA-Seq.S2_L003_R2.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S2_L003_R2_001.fastq.gz 14539185616 FASTQ S2_L003_R2 unaligned CPTAC3 0c4fda12-61cc-4a98-ae5e-bb10fea2a063 1165c9ebb8c45483c2f53094d8684da7 {"aliquot_tag": "ALQ_2446df72", "sample": "S2", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02858.scRNA-Seq.S4_L002_R1.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S4_L002_R1_001.fastq.gz 4489211288 FASTQ S4_L002_R1 unaligned CPTAC3 6ff5d52e-c39c-4f31-9e4e-ff7393ff56dc a753a4926fa3fb24de876b9690ec00f2 {"aliquot_tag": "ALQ_2446df72", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02858.scRNA-Seq.S4_L002_R2.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S4_L002_R2_001.fastq.gz 15591162519 FASTQ S4_L002_R2 unaligned CPTAC3 aae45fdc-c56a-43cb-96b3-a032d94088ba c1996d22e07505a2c4c9d5d72bc3a6dd {"aliquot_tag": "ALQ_2446df72", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02858.WGS.N C3L-02858 CCRCC WGS blood_normal CPT0389210002 CPT0389210002.WholeGenome.RP-2158.bam 25054454450 BAM aligned CPTAC3 58c0c24c-bf68-4ca3-9218-36a0b6e30c3e de3a117e5382accea2c53d2b372e1434 {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-02858.WGS.N.hg38 C3L-02858 CCRCC WGS blood_normal CPT0389210002 60184fd8-1ab5-4ec8-8973-9dbd5a359d60_wgs_gdc_realn.bam 76418261666 BAM harmonized CPTAC3 abd46a96-622b-4902-9ac7-afc3318e4ccc 206e482303f2177cdca55e893127a1ae {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-02858.WGS.T C3L-02858 CCRCC WGS tumor CPT0389160006 CPT0389160006.WholeGenome.RP-2158.bam 24276047510 BAM aligned CPTAC3 2649a862-e3cd-47c4-a2d4-ed2ac9545f03 a91c6a97dfd03ec81dcd18d6b67321bb {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor"} -C3L-02858.WGS.T.hg38 C3L-02858 CCRCC WGS tumor CPT0389160006 4776ee89-e0e5-4b21-830d-1ac1b374648c_wgs_gdc_realn.bam 74980546104 BAM harmonized CPTAC3 89632ba2-7a09-4444-9ea7-c7103abd91ac ba569bcb3fa15a78db5c294fcc2a44b3 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor"} -C3L-02858.WXS.N C3L-02858 CCRCC WXS blood_normal CPT0389210002 CPT0389210002.WholeExome.RP-1303.bam 31546235610 BAM aligned CPTAC3 4c494225-3ac0-4077-a11c-a992c86dcb24 c762135b7ad97ee47fa3541dbd46d65b {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-02858.WXS.N.hg38 C3L-02858 CCRCC WXS blood_normal CPT0389210002 60184fd8-1ab5-4ec8-8973-9dbd5a359d60_wxs_gdc_realn.bam 43285612982 BAM harmonized CPTAC3 166ab79e-83c8-4eee-922f-d9b11090d471 c6e182b0186aa114c6d458f03bd12097 {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-02858.WXS.T C3L-02858 CCRCC WXS tumor CPT0389160006 CPT0389160006.WholeExome.RP-1303.bam 31003152591 BAM aligned CPTAC3 a2f86efe-db9e-457a-934a-8ea1dba6f410 d0c965820accfe71a11181b09ec13835 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor"} -C3L-02858.WXS.T.hg38 C3L-02858 CCRCC WXS tumor CPT0389160006 4776ee89-e0e5-4b21-830d-1ac1b374648c_wxs_gdc_realn.bam 42500362623 BAM harmonized CPTAC3 ea695f22-ac6b-48ce-9d2c-4b0791b6078e 7d03e5144f47d659f272ae853ab6a074 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor"} -C3L-02860.MethArray.Green.T C3L-02860 CCRCC Methylation_Array tumor CPT0389250006 205589740002_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0a7e9031-cb6b-41f4-bce0-1742f6e30dff ebcb84d979e3de3ee47f100c7164b98a {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor"} -C3L-02860.MethArray.Red.T C3L-02860 CCRCC Methylation_Array tumor CPT0389250006 205589740002_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 a221e834-4091-4e8e-91ae-1da9efc27bbf f6d56cf2fb084f1b2f23153f90c68862 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor"} -C3L-02860.miRNA-Seq.S10_L001_R1.T C3L-02860 CCRCC miRNA-Seq tumor CPT0389250009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGTACG_S10_L001_R1_001.unaln.bam 279894472 BAM S10_L001_R1 unaligned CPTAC3 a72a43f7-7df8-4d68-a365-91fd5bc909ba 1e5fa80fa870022132797edca109358b {"aliquot_tag": "ALQ_9bc3abb1", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02860.miRNA-Seq.T.hg38 C3L-02860 CCRCC miRNA-Seq tumor CPT0389250009 94a13d2b-7663-40bb-994f-696fc077ddb8_mirnaseq_gdc_realn.bam 296755766 BAM harmonized CPTAC3 83334648-84ab-428b-aee9-c3118b318b5f 1ca692610b0d7df389ac8f3c4030f6a8 {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor"} -C3L-02860.RNA-Seq.chimeric.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.chimeric.gdc_realn.bam 207910190 BAM chimeric harmonized CPTAC3 87f24e0a-c3c8-4a5c-8a5f-ef08bb39f327 bb1c57adec6e052274f60d9c32b12538 {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor"} -C3L-02860.RNA-Seq.genomic.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.genomic.gdc_realn.bam 6442618902 BAM genomic harmonized CPTAC3 2d251e7c-39d5-4713-9788-91b66e90f132 fe071daf52e04f28f6fd51d53fe32de0 {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor"} -C3L-02860.RNA-Seq.S13_L004_R1.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R1_001.fastq.gz 2933315609 FASTQ S13_L004_R1 unaligned CPTAC3 0b222aed-7df5-42af-892a-fd96f5f1af65 725f37ecb62fff961b515afab0f40de1 {"aliquot_tag": "ALQ_9bc3abb1", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02860.RNA-Seq.S13_L004_R2.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R2_001.fastq.gz 3295638762 FASTQ S13_L004_R2 unaligned CPTAC3 0d342b02-6726-406a-9570-94487e8fb1d6 f471f0c505599e41763b0b8c29a680a1 {"aliquot_tag": "ALQ_9bc3abb1", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02860.RNA-Seq.transcriptome.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.transcriptome.gdc_realn.bam 8253067438 BAM transcriptome harmonized CPTAC3 4a929423-6eab-413b-8813-eaf1c17d4f4c 016c0bca982080a1687960c49ae0874c {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor"} -C3L-02860.WGS.N C3L-02860 CCRCC WGS blood_normal CPT0389300002 CPT0389300002.WholeGenome.RP-2158.bam 23099398294 BAM aligned CPTAC3 ec546f47-6a77-4084-b2d5-eda81012bc21 bceed66ace607e5869bdadbed2a302af {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal"} -C3L-02860.WGS.N.hg38 C3L-02860 CCRCC WGS blood_normal CPT0389300002 67807703-4cbc-44f7-a84d-8d321c5641ff_wgs_gdc_realn.bam 70493467037 BAM harmonized CPTAC3 b7d2d778-bc89-4939-a27b-ec7242e82b81 9897310b3613d4762198b5611e508c71 {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal"} -C3L-02860.WGS.T C3L-02860 CCRCC WGS tumor CPT0389250006 CPT0389250006.WholeGenome.RP-2158.bam 24287929743 BAM aligned CPTAC3 bd8d009a-411c-4cd1-8e57-d4a037698ceb 304b9ec523a95692e658c5ad1bba56d6 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor"} -C3L-02860.WGS.T.hg38 C3L-02860 CCRCC WGS tumor CPT0389250006 3ddd9d82-58a5-42de-82ff-522ad4bffb4c_wgs_gdc_realn.bam 72969243980 BAM harmonized CPTAC3 81638b58-27e4-44f1-80ec-f40395767e88 f5a3a0556312b8049d93f40904985858 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor"} -C3L-02860.WXS.N C3L-02860 CCRCC WXS blood_normal CPT0389300002 CPT0389300002.WholeExome.RP-1303.bam 23753257730 BAM aligned CPTAC3 927e7092-9c02-4912-bd20-42e6e8bb567c 242c51e3ea5ac5854a013be7d2975c39 {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal"} -C3L-02860.WXS.N.hg38 C3L-02860 CCRCC WXS blood_normal CPT0389300002 67807703-4cbc-44f7-a84d-8d321c5641ff_wxs_gdc_realn.bam 32894905881 BAM harmonized CPTAC3 5c30e265-9ad4-4125-bca6-782cdaa692d6 902e3090c1c1f9ea7c8bc64f1e5972d8 {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal"} -C3L-02860.WXS.T C3L-02860 CCRCC WXS tumor CPT0389250006 CPT0389250006.WholeExome.RP-1303.bam 20835930517 BAM aligned CPTAC3 a064e1a3-1a24-4a5f-92e0-039c82654991 b9fde77c54fcbc3c6f4d96938f6c1717 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor"} -C3L-02860.WXS.T.hg38 C3L-02860 CCRCC WXS tumor CPT0389250006 3ddd9d82-58a5-42de-82ff-522ad4bffb4c_wxs_gdc_realn.bam 29359010818 BAM harmonized CPTAC3 425b4499-d17b-4b10-a4a0-f7e99b31e1e1 83be3cba80f31aba09e20fab88e2120b {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor"} -C3L-02888.ANN_d41b87f7.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.chimeric.gdc_realn.bam 337542318 BAM chimeric harmonized CPTAC3 abaf9c8f-6aa6-44a4-a44a-5cfa3e607556 4b6bbce9dcd7904f9570e2856d5d45cf {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.ANN_d41b87f7.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.genomic.gdc_realn.bam 10623303199 BAM genomic harmonized CPTAC3 c48344b4-6910-40f9-932e-31fc61fb8aef 512ba394ca093e74034500a7ec00c57a {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.ANN_d41b87f7.RNA-Seq.S9_L007_R1.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R1_001.fastq.gz 4650540759 FASTQ S9_L007_R1 unaligned CPTAC3 393f7304-aade-4eca-bc5e-dcb06cb2346b 988ceba63796afefb5afb6d8ea608fff {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02888.ANN_d41b87f7.RNA-Seq.S9_L007_R2.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R2_001.fastq.gz 5329470624 FASTQ S9_L007_R2 unaligned CPTAC3 b9b96461-e577-485d-b368-8f0ed1e4131b e6ce1fb6dab37e603a39e4090e1fd87e {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02888.ANN_d41b87f7.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.transcriptome.gdc_realn.bam 14955729450 BAM transcriptome harmonized CPTAC3 208c9eb7-0f67-4ee8-a416-157d266175d3 dc0bee1e0c997aef2e83e4e16f40531f {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_230ed79a.WXS.T C3L-02888 PDA WXS tumor CPT0166540034 CPT0166540034.WholeExome.RP-1303.bam 22062083549 BAM aligned CPTAC3 588209ae-1be5-48f0-be31-5dae47c1bb25 496d2a7d406933be2bf71e0448f0d6b4 {"aliquot_tag": "DUP_230ed79a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_230ed79a.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540034 9108d26c-4d40-4d63-98e5-7666ceb9e36c_wxs_gdc_realn.bam 30987766785 BAM harmonized CPTAC3 7031786c-5582-4d21-a380-423077b3e35c 26c3f8dca88144aefaa3541ffcd37ba3 {"aliquot_tag": "DUP_230ed79a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_24b0cc6d.WXS.N C3L-02888 PDA WXS blood_normal CPT0166580002 CPT0166580002.WholeExome.RP-1303.bam 23287968778 BAM aligned CPTAC3 66795e81-fe8a-4158-88cd-60bc4b14028c f912abc76685c5bf6214d72860c09a46 {"aliquot_tag": "DUP_24b0cc6d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-02888.DUP_24b0cc6d.WXS.N.hg38 C3L-02888 PDA WXS blood_normal CPT0166580002 b34b281b-75d9-4342-9b38-715fb83f8bc2_wxs_gdc_realn.bam 32447372038 BAM harmonized CPTAC3 9cb4b15c-f17b-406a-b420-17e50680aa8b 92aa265ad7ce508c61adabcf80a57063 {"aliquot_tag": "DUP_24b0cc6d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-02888.DUP_5dbfab27.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.chimeric.gdc_realn.bam 65556272 BAM chimeric harmonized CPTAC3 f2b71889-5dfc-4c1f-a05f-7e89e0b8c218 235b092090cdcd584186b40e444dd5d6 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_5dbfab27.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.genomic.gdc_realn.bam 7155004157 BAM genomic harmonized CPTAC3 8fad3910-942b-48f3-beed-e2cb61056130 10a860088650a7fd63a585e73195df41 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_5dbfab27.RNA-Seq.S18_L005_R1.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3503547846 FASTQ S18_L005_R1 unaligned CPTAC3 6bb5b4bf-eccf-4cca-9a7f-b89a0398deb6 2382f1a75e919f57e259072df2d21713 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_5dbfab27.RNA-Seq.S18_L005_R2.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3829335080 FASTQ S18_L005_R2 unaligned CPTAC3 d35f7e8f-539a-4639-a9cf-0fe318eb24c6 6db335032c16afee7a4b0d8d6412adf6 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_5dbfab27.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.transcriptome.gdc_realn.bam 10845991006 BAM transcriptome harmonized CPTAC3 366d3e3b-539d-4ebf-95e5-403b17b7a3d7 674d56b569352ab9825eccc404729859 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_bd6a4239.WXS.T C3L-02888 PDA WXS tumor CPT0166540033 CPT0166540033.WholeExome.RP-1303.bam 37208515996 BAM aligned CPTAC3 0bb7e9c1-18d7-4cb5-b0a3-6ab8c886b045 085967d10db5db7c8a1f6c0f1a4f8258 {"aliquot_tag": "DUP_bd6a4239", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_bd6a4239.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540033 3285e42d-f066-42a4-a5b7-073132976f88_wxs_gdc_realn.bam 51339995298 BAM harmonized CPTAC3 46a34576-271e-43a3-9c02-a238ac35e02d 9e6bd6b50d14763ec2c635acf3039684 {"aliquot_tag": "DUP_bd6a4239", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_c0c7d540.RNA-Seq.chimeric.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.chimeric.gdc_realn.bam 28648617 BAM chimeric harmonized CPTAC3 823f1dcc-b8e1-4038-82fc-3a95feceab22 3b5b3f375891f7f8149bc9e73c404349 {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02888.DUP_c0c7d540.RNA-Seq.genomic.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.genomic.gdc_realn.bam 6504658615 BAM genomic harmonized CPTAC3 6f6aaf10-f845-4ade-8c6a-590c311e8cbe cdd4c48acea5da8632392bb7f0aa90c9 {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02888.DUP_c0c7d540.RNA-Seq.S25_L008_R1.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R1_001.fastq.gz 3069406278 FASTQ S25_L008_R1 unaligned CPTAC3 15edeb77-4c31-4c22-9f4a-aa1f6014afd4 cbed15b22ffb86a77f11bf3e44e8551e {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02888.DUP_c0c7d540.RNA-Seq.S25_L008_R2.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R2_001.fastq.gz 3424055467 FASTQ S25_L008_R2 unaligned CPTAC3 119e10fb-c39b-4d79-8bda-aea21d3019d7 60a2d6531d5cc71a31955602a8e0326b {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S25", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02888.DUP_c0c7d540.RNA-Seq.transcriptome.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.transcriptome.gdc_realn.bam 8245792712 BAM transcriptome harmonized CPTAC3 02bf94e3-fcac-476b-b416-eac687fb15c2 3d61e980192cf6090c7f7f5ccea61e49 {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02888.DUP_ca6d72af.WXS.T C3L-02888 PDA WXS tumor CPT0166540032 CPT0166540032.WholeExome.RP-1303.bam 24021156492 BAM aligned CPTAC3 eeada0d4-a3bd-4b98-97cd-e8fd8e8920db 501a483994d16b5a7024d66cd66b3fd1 {"aliquot_tag": "DUP_ca6d72af", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02888.DUP_ca6d72af.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540032 e7d75cba-4f43-4692-91fc-85b15c7fec47_wxs_gdc_realn.bam 33430916634 BAM harmonized CPTAC3 70c43eaa-9e3d-43ca-bca8-ffb239508b44 4ef918d16228689a87dbfe5af187fd05 {"aliquot_tag": "DUP_ca6d72af", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02890.MethArray.Green.T C3L-02890 PDA Methylation_Array tumor CPT0166650009 203561620008_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 1b3192eb-a5d8-404c-bbab-1e6a4d708b4a 993e68dbce47c4b85844f30725390bc5 {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02890.MethArray.Red.T C3L-02890 PDA Methylation_Array tumor CPT0166650009 203561620008_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 718996ff-e713-40d7-8bdb-38c9e40a5f34 ca49d1c0b35804c29f65a2015d9e2f4b {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02890.miRNA-Seq.S25_L005_R1.T C3L-02890 PDA miRNA-Seq tumor CPT0166650012 190712_UNC32-K00270_0192_BH7HL3BBXY_CGATGT_S25_L005_R1_001.unaln.bam 241719651 BAM S25_L005_R1 unaligned CPTAC3 07e60f8e-2863-4c0d-b060-366547e9b06a 57d387208282753513576517ded1e8a6 {"aliquot_tag": "ALQ_43af4b33", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02890.miRNA-Seq.T.hg38 C3L-02890 PDA miRNA-Seq tumor CPT0166650012 aa4b1d34-d650-4d6d-beb1-29960c9bde17_mirnaseq_gdc_realn.bam 272577730 BAM harmonized CPTAC3 680dc196-6446-4352-ac94-6f80f2eb2d70 04683c19d3de6f8a8779d31fa9c3475b {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor"} -C3L-02890.RNA-Seq.chimeric.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.chimeric.gdc_realn.bam 44851168 BAM chimeric harmonized CPTAC3 c61d00ea-2066-4646-8181-4bec519c5fc3 cc42c710a7899897c4be1d8dae78457f {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor"} -C3L-02890.RNA-Seq.genomic.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.genomic.gdc_realn.bam 8746077767 BAM genomic harmonized CPTAC3 6fb6346c-b5fd-43f7-b05b-5ff302521bda 90a16a4f9ea771ef5e06473f7bf1cdfd {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor"} -C3L-02890.RNA-Seq.S10_L003_R1.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R1_001.fastq.gz 4215019566 FASTQ S10_L003_R1 unaligned CPTAC3 ab9a6334-5279-4b73-b145-fefb71dc16f7 a7bdce574db12f7b5675538317323bbe {"aliquot_tag": "ALQ_43af4b33", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02890.RNA-Seq.S10_L003_R2.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R2_001.fastq.gz 4291813512 FASTQ S10_L003_R2 unaligned CPTAC3 8c02a787-6b3d-42d6-aeac-22a8491a5b58 dba00036d74f85c8800958152cc28046 {"aliquot_tag": "ALQ_43af4b33", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02890.RNA-Seq.transcriptome.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.transcriptome.gdc_realn.bam 10948730597 BAM transcriptome harmonized CPTAC3 e831aee2-8983-4e61-9cdf-21f7af182cfb e00e5d3e9cbd6c45879da39c098330a2 {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor"} -C3L-02890.Targeted.T C3L-02890 PDA Targeted_Sequencing tumor CPT0166650009 CPT0166650009.CustomSelection.RP-1303.PDO-18786.bam 4247718728 BAM aligned CPTAC3 1b8ec7a3-4af2-4431-8f2f-1977381cf5a3 eb9b55b8a6166c1887d39c9b9e77c2ed {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02890.Targeted.T.hg38 C3L-02890 PDA Targeted_Sequencing tumor CPT0166650009 348499bf-d9cb-4bc4-baa4-7b72b3f62956_targetedsequencing_gdc_realn.bam 5890530749 BAM harmonized CPTAC3 6e4ee43c-12f1-4260-ba13-e084f20c8cbe 4000e79fbecbdbfa52a675ab98ce063f {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02890.WGS.N C3L-02890 PDA WGS blood_normal CPT0166690002 CPT0166690002.WholeGenome.RP-1303.bam 65473346392 BAM aligned CPTAC3 bd486fb4-4189-43f3-869d-20092c5fe37c 69f2dc09c2c249a2ab058da1e24aa0fa {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal"} -C3L-02890.WGS.N.hg38 C3L-02890 PDA WGS blood_normal CPT0166690002 2358f2ec-b9f0-44f6-be2c-270b74ce2482_wgs_gdc_realn.bam 94735923334 BAM harmonized CPTAC3 9bd78a6a-d4fc-4750-9f39-4e4b9910e32f 527f2b16c87ddbfadc90e352bab0ee02 {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal"} -C3L-02890.WGS.T C3L-02890 PDA WGS tumor CPT0166650009 CPT0166650009.WholeGenome.RP-1303.bam 60612313509 BAM aligned CPTAC3 9541b920-fe37-4f35-8ba6-e701cf7220a1 ef7b6651285384cd2cf8f1062c4e2090 {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02890.WGS.T.hg38 C3L-02890 PDA WGS tumor CPT0166650009 348499bf-d9cb-4bc4-baa4-7b72b3f62956_wgs_gdc_realn.bam 88960068667 BAM harmonized CPTAC3 69bede23-40d4-4ba0-987a-dcdbd7643515 64f352eb12ad31eb7d75886ec98072da {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02890.WXS.N C3L-02890 PDA WXS blood_normal CPT0166690002 CPT0166690002.WholeExome.RP-1303.bam 25768779338 BAM aligned CPTAC3 bd97a890-7e3b-4859-98a0-e3c11adc917a 940a73a7a843c43853ab04197dc0c8b3 {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal"} -C3L-02890.WXS.N.hg38 C3L-02890 PDA WXS blood_normal CPT0166690002 2358f2ec-b9f0-44f6-be2c-270b74ce2482_wxs_gdc_realn.bam 35701990276 BAM harmonized CPTAC3 085bc27e-577d-4c57-b74a-479692f48de0 ba096209380f065d81f0146529a4004e {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal"} -C3L-02890.WXS.T C3L-02890 PDA WXS tumor CPT0166650009 CPT0166650009.WholeExome.RP-1303.bam 51526884822 BAM aligned CPTAC3 20b93b4c-60d9-4bb1-981e-1531cb3c9151 06485abcb33cad0f0533e245b259a66b {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02890.WXS.T.hg38 C3L-02890 PDA WXS tumor CPT0166650009 348499bf-d9cb-4bc4-baa4-7b72b3f62956_wxs_gdc_realn.bam 71572146270 BAM harmonized CPTAC3 db40c095-79eb-4ac4-b006-de7092adf87c 5bd0e674cd97472e17c0bf9da7fa427d {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor"} -C3L-02891.MethArray.Green.A C3L-02891 LSCC Methylation_Array tissue_normal CPT0218310006 203219640102_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c5ba1306-03ef-4bf8-b7f6-1316cca10f39 94bea50201db44a6405c99a540887288 {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.MethArray.Green.T C3L-02891 LSCC Methylation_Array tumor CPT0218280006 203219670180_R05C01_Grn.idat 13676242 IDAT Green NA CPTAC3 df92a3ba-f783-41b7-9e18-205081cdbfbc 8d07c9e0db7a97099a8d445b4562723a {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor"} -C3L-02891.MethArray.Red.A C3L-02891 LSCC Methylation_Array tissue_normal CPT0218310006 203219640102_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 3c6c9a69-90d8-43a6-8b32-33016e9cf967 0bc4f741075af44882aa61de075f7e6d {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.MethArray.Red.T C3L-02891 LSCC Methylation_Array tumor CPT0218280006 203219670180_R05C01_Red.idat 13676242 IDAT Red NA CPTAC3 ab1023ee-dd54-4a05-bf48-ccb05d851722 8bb4caf142f1bcb8d858c4cf8974673d {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor"} -C3L-02891.miRNA-Seq.A.hg38 C3L-02891 LSCC miRNA-Seq tissue_normal CPT0218310009 6998fab8-18ba-42a4-bb78-151c8915b8fb_mirnaseq_gdc_realn.bam 228679367 BAM harmonized CPTAC3 e1dfc1c0-0f7b-4914-b4d8-1f7857457a4c f3e41982365965a6440de574d1a4fc88 {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.miRNA-Seq.S21_L003_R1.A C3L-02891 LSCC miRNA-Seq tissue_normal CPT0218310009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACCGG_S21_L003_R1_001.unaln.bam 204353229 BAM S21_L003_R1 unaligned CPTAC3 bcf9d57c-4838-44c5-a92e-1d2079c0855c 7eae47619dab8baeaf5ae19531c835c3 {"aliquot_tag": "ALQ_b5cda08", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.miRNA-Seq.S27_L002_R1.T C3L-02891 LSCC miRNA-Seq tumor CPT0218280009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGTACG_S27_L002_R1_001.unaln.bam 149149019 BAM S27_L002_R1 unaligned CPTAC3 8e213286-d36c-4ce1-80f1-6d6b9d1dda38 93561a574d5035360fb9ba66cabf511f {"aliquot_tag": "ALQ_cd106bdc", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02891.miRNA-Seq.T.hg38 C3L-02891 LSCC miRNA-Seq tumor CPT0218280009 1df12bc0-d937-45bf-81bd-37253256e37d_mirnaseq_gdc_realn.bam 169162035 BAM harmonized CPTAC3 fc5bfe8f-b3c8-49f9-a777-e239fd5cbea4 5fb312e8702ce040bf953bb0257ff64c {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor"} -C3L-02891.RNA-Seq.chimeric.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.chimeric.gdc_realn.bam 282378656 BAM chimeric harmonized CPTAC3 0976a85f-ed4f-4252-ac3f-981fad015e8f b7d4cc8e1149695c7a3d8c7c9b7b06b7 {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.RNA-Seq.chimeric.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.chimeric.gdc_realn.bam 107298106 BAM chimeric harmonized CPTAC3 354cf9f2-4de7-4654-8f7c-3b5de6c4c1f5 ea599a53aeda41e9aed3889d6eb14a0c {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor"} -C3L-02891.RNA-Seq.genomic.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.genomic.gdc_realn.bam 9236498318 BAM genomic harmonized CPTAC3 602095f5-f29c-4a35-8b38-80d49cc17617 1472278fb567426ca7cbfc87e9364c0e {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.RNA-Seq.genomic.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.genomic.gdc_realn.bam 9651914072 BAM genomic harmonized CPTAC3 5585b1f7-09cd-42c5-9578-a0fad70ff45d c249657aef1b2aa62c902b2e7a8869b9 {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor"} -C3L-02891.RNA-Seq.S6_L002_R1.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4290807357 FASTQ S6_L002_R1 unaligned CPTAC3 5951182e-3ce1-4d4d-84b2-eb78eb0e0908 cc923261ceb1e03cef4f8c5c80917235 {"aliquot_tag": "ALQ_b5cda08", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.RNA-Seq.S6_L002_R2.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4872579534 FASTQ S6_L002_R2 unaligned CPTAC3 23f45e4a-71ff-426b-80dd-7f5868be3ccc 7a47d37830d1cd2d54446948a357d5c7 {"aliquot_tag": "ALQ_b5cda08", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.RNA-Seq.S8_L007_R1.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R1_001.fastq.gz 4392988389 FASTQ S8_L007_R1 unaligned CPTAC3 b0f21b06-17fa-472d-bf5a-d1a189bfc5c0 9d777a70e1fe574df9a55423734b27fe {"aliquot_tag": "ALQ_cd106bdc", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02891.RNA-Seq.S8_L007_R2.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R2_001.fastq.gz 4925447728 FASTQ S8_L007_R2 unaligned CPTAC3 166ac5f0-39f7-4759-a536-41c0147bb70a c8730730b85130c333641fbd3d63a958 {"aliquot_tag": "ALQ_cd106bdc", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02891.RNA-Seq.transcriptome.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.transcriptome.gdc_realn.bam 10695601540 BAM transcriptome harmonized CPTAC3 ace8c0a0-800e-4a1a-9b3d-9ed830181f13 c1e21f55ce34178f8151e7451aa9de18 {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.RNA-Seq.transcriptome.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.transcriptome.gdc_realn.bam 10375318535 BAM transcriptome harmonized CPTAC3 43818c5f-c4e3-4268-b0cc-8c9a38443eab 23a4543a54384afb28b1c909350f10d9 {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor"} -C3L-02891.WGS.A C3L-02891 LSCC WGS tissue_normal CPT0218310006 CPT0218310006.WholeGenome.RP-1303.bam 57004135378 BAM aligned CPTAC3 743a4792-55f4-4821-b2a6-e7aff024cdfe 5dbbcdc3e67e5dba9ce48597e2517dbd {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.WGS.A.hg38 C3L-02891 LSCC WGS tissue_normal CPT0218310006 a819c3d7-b052-46a5-8163-c30fab80758c_wgs_gdc_realn.bam 84441855341 BAM harmonized CPTAC3 2b354c84-de84-4bda-b5d5-63f0f81838b3 09424ab6043a46f60545c08a1b79a493 {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.WGS.N C3L-02891 LSCC WGS blood_normal CPT0219890002 CPT0219890002.WholeGenome.RP-1303.bam 63073165063 BAM aligned CPTAC3 674ba111-dd38-4298-bab5-a81ee98716b1 af6e12b4ef78b5cf789e003e8148c449 {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal"} -C3L-02891.WGS.N.hg38 C3L-02891 LSCC WGS blood_normal CPT0219890002 dc7a5978-8435-4a74-a321-9975d1b9db7f_wgs_gdc_realn.bam 90780849091 BAM harmonized CPTAC3 18cc4bc2-f7a7-4314-9b26-a1174489b4b5 b31a1ad7806ede67ff1b66dbf9d024a8 {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal"} -C3L-02891.WGS.T C3L-02891 LSCC WGS tumor CPT0218280006 CPT0218280006.WholeGenome.RP-1303.bam 68068032493 BAM aligned CPTAC3 e48d786a-4a0c-47a5-89cf-024d43c1190a 62acabdb5af42884998aa08132118dea {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor"} -C3L-02891.WGS.T.hg38 C3L-02891 LSCC WGS tumor CPT0218280006 b341203a-de92-4bb8-9749-ccb9721ec873_wgs_gdc_realn.bam 97892053925 BAM harmonized CPTAC3 78215c83-894a-4dca-a826-2361bd047771 fc1b9768866187f944d4331b927b50bf {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor"} -C3L-02891.WXS.A C3L-02891 LSCC WXS tissue_normal CPT0218310006 CPT0218310006.WholeExome.RP-1303.bam 29157834678 BAM aligned CPTAC3 e062da4e-3662-4bbc-a27a-b8008f551254 6d2ba230733c1fe104d261b2dc5cf166 {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.WXS.A.hg38 C3L-02891 LSCC WXS tissue_normal CPT0218310006 a819c3d7-b052-46a5-8163-c30fab80758c_wxs_gdc_realn.bam 40244674857 BAM harmonized CPTAC3 310a21b9-6605-4589-aa6f-29618b89c841 f54c2fc369c4d6175fbe051eb739694b {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02891.WXS.N C3L-02891 LSCC WXS blood_normal CPT0219890002 CPT0219890002.WholeExome.RP-1303.bam 26451401673 BAM aligned CPTAC3 3fb78710-1162-446e-9e37-39fc72b70d18 b266458fdad42958200c725aca600fc7 {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal"} -C3L-02891.WXS.N.hg38 C3L-02891 LSCC WXS blood_normal CPT0219890002 dc7a5978-8435-4a74-a321-9975d1b9db7f_wxs_gdc_realn.bam 36466893765 BAM harmonized CPTAC3 c15eaede-f5db-4ac7-a092-a780a9644873 8cd00ae4e4907e709cbfb18a27c2b50d {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal"} -C3L-02891.WXS.T C3L-02891 LSCC WXS tumor CPT0218280006 CPT0218280006.WholeExome.RP-1303.bam 22215882390 BAM aligned CPTAC3 6b27dffb-75f4-45aa-86dc-1f39f5a2b6f5 75581ed2178feddae36419ffa4895139 {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor"} -C3L-02891.WXS.T.hg38 C3L-02891 LSCC WXS tumor CPT0218280006 b341203a-de92-4bb8-9749-ccb9721ec873_wxs_gdc_realn.bam 30646282965 BAM harmonized CPTAC3 6eda6841-b626-4429-8e88-d79952fc3648 4b8c613488504950e73e2ca43c96bfac {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor"} -C3L-02893.MethArray.Green.A C3L-02893 LUAD Methylation_Array tissue_normal CPT0197040006 203561620016_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 837c6ef9-0f96-4ec4-aa98-f7c56935b5c5 a7690e2154d9e0297143f35892fcef21 {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.MethArray.Green.T C3L-02893 LUAD Methylation_Array tumor CPT0197030006 203561450017_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b71d6bd8-d48e-4749-9529-b6fad785586e aa868d721053b06b36b929017e2427e7 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor"} -C3L-02893.MethArray.Red.A C3L-02893 LUAD Methylation_Array tissue_normal CPT0197040006 203561620016_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 a66dd6f6-eb19-4274-bd64-c792fe9a2821 a8716ed7390a0982deb3072eb55485e0 {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.MethArray.Red.T C3L-02893 LUAD Methylation_Array tumor CPT0197030006 203561450017_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 661c0e8c-6052-4c86-9497-4e0fe8bd4f61 33f877fbb6343df3289aeeb9ad042524 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor"} -C3L-02893.miRNA-Seq.A.hg38 C3L-02893 LUAD miRNA-Seq tissue_normal CPT0197040009 273a4b23-0d7b-40e8-9b78-243b48c2adf0_mirnaseq_gdc_realn.bam 265584575 BAM harmonized CPTAC3 79741339-4f59-4eeb-b9b0-8a4b3d33dfe7 2e398e3a592c9f4a0b4520ccd1fcce9d {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.miRNA-Seq.S10_L005_R1.T C3L-02893 LUAD miRNA-Seq tumor CPT0197030009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTTCC_S10_L005_R1_001.unaln.bam 201485904 BAM S10_L005_R1 unaligned CPTAC3 bb2849a7-2deb-4aed-a6b0-4c9dad4a4e05 8fe9530e9fc43f6ae99b6cecba09d17b {"aliquot_tag": "ALQ_eb28ac5f", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02893.miRNA-Seq.S26_L007_R1.A C3L-02893 LUAD miRNA-Seq tissue_normal CPT0197040009 190712_UNC32-K00270_0192_BH7HL3BBXY_TTAGGC_S26_L007_R1_001.unaln.bam 234450049 BAM S26_L007_R1 unaligned CPTAC3 3dfba283-ed07-47dc-89e2-f048d3cc8183 0b59e23cd02959587c3c4e655e044a0a {"aliquot_tag": "ALQ_5908704f", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.miRNA-Seq.T.hg38 C3L-02893 LUAD miRNA-Seq tumor CPT0197030009 80f94f24-6539-4048-ba7e-c60149ac7579_mirnaseq_gdc_realn.bam 220281377 BAM harmonized CPTAC3 2fd1afbc-3365-4184-a7b9-f44788b23fa3 efcf5f8ac598aeba4fb851297f618d2e {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor"} -C3L-02893.RNA-Seq.chimeric.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.chimeric.gdc_realn.bam 36319593 BAM chimeric harmonized CPTAC3 6a90eab0-7955-46cd-a94c-2a2a78f76ec7 a91869ba5184fe76463b257f4b8d7ec9 {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.RNA-Seq.chimeric.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.chimeric.gdc_realn.bam 38274422 BAM chimeric harmonized CPTAC3 f76634b4-e2b2-4d5a-9bf1-588080b4ba37 b9b83df2044d2fbc7961f98fd7960846 {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor"} -C3L-02893.RNA-Seq.genomic.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.genomic.gdc_realn.bam 11799065200 BAM genomic harmonized CPTAC3 97d33e73-e5b7-43f1-a507-4f652e3d9aa7 330a11a1fda80711019d9d52f37b1a05 {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.RNA-Seq.genomic.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.genomic.gdc_realn.bam 12114449049 BAM genomic harmonized CPTAC3 1724b857-e426-4831-8427-9180ef0f03a1 75a15d0fcf6525d2ac34af1c5b31b28a {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor"} -C3L-02893.RNA-Seq.S11_L003_R1.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 4192935120 FASTQ S11_L003_R1 unaligned CPTAC3 ad7c89e3-6405-4975-87c7-d37f2aa9afad 3faa299ef8feba841a663b47df1d6e5f {"aliquot_tag": "ALQ_eb28ac5f", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02893.RNA-Seq.S11_L003_R2.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 4692968950 FASTQ S11_L003_R2 unaligned CPTAC3 91ec17ab-f883-4958-b539-aa19e60d5d4c 091363e704beeb95b19b0155a5333d3e {"aliquot_tag": "ALQ_eb28ac5f", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02893.RNA-Seq.S32_L008_R1.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R1_001.fastq.gz 3681804501 FASTQ S32_L008_R1 unaligned CPTAC3 27cb8b36-6d3a-4705-b147-54505536dae9 09fe8e4caf7efcdcc0358343d440f400 {"aliquot_tag": "ALQ_5908704f", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.RNA-Seq.S32_L008_R2.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R2_001.fastq.gz 4034277471 FASTQ S32_L008_R2 unaligned CPTAC3 e42baa71-96d7-41c4-ab72-b8b5367127ed 6c87b4e37ec2fa82d085f0c259a97de7 {"aliquot_tag": "ALQ_5908704f", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.RNA-Seq.transcriptome.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.transcriptome.gdc_realn.bam 8041324250 BAM transcriptome harmonized CPTAC3 aeaca61b-1550-4d72-af24-bb3ae42a5b9f 5cb9b62995fa88c679ab3bfcd8ba6eb4 {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.RNA-Seq.transcriptome.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.transcriptome.gdc_realn.bam 9500830299 BAM transcriptome harmonized CPTAC3 2ef3810e-0f6f-4fc5-8371-7a0bba2ad3e9 07a00379c670c0dcc71f2410030638c7 {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor"} -C3L-02893.WGS.N C3L-02893 LUAD WGS blood_normal CPT0197820002 CPT0197820002.WholeGenome.RP-1303.bam 76283892427 BAM aligned CPTAC3 ebe7bc8d-2c60-4b81-89b5-a96617b1fa2a cb19d17e57620afc5559b06d028cca41 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02893.WGS.N.hg38 C3L-02893 LUAD WGS blood_normal CPT0197820002 82551fd4-96fd-4a18-9f23-2564f03cfb37_wgs_gdc_realn.bam 111472479929 BAM harmonized CPTAC3 a124bff4-c42b-4663-9d6d-ec17825afdcf 649deccfd2896fb2dba95d04da57a4d5 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02893.WGS.T C3L-02893 LUAD WGS tumor CPT0197030006 CPT0197030006.WholeGenome.RP-1303.bam 58952130523 BAM aligned CPTAC3 4c37f9fc-f477-4444-bf08-87699214903b 0292f6cbd0020e3d2602a3cb827b0504 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor"} -C3L-02893.WGS.T.hg38 C3L-02893 LUAD WGS tumor CPT0197030006 52cb658d-2bc0-4319-9868-58221c5811e2_wgs_gdc_realn.bam 85514404535 BAM harmonized CPTAC3 e86bbe40-eaf8-4331-9a0d-fa66a3fc0afe ccf9344cf0096bf2e0769325c9df9d4e {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor"} -C3L-02893.WXS.A C3L-02893 LUAD WXS tissue_normal CPT0197040006 CPT0197040006.WholeExome.RP-1303.bam 22095158520 BAM aligned CPTAC3 fc316dcf-c53a-43a8-aa38-a1a79c4f4691 d1f5c71d639faa7b8ef51ca8c7a35a7c {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.WXS.A.hg38 C3L-02893 LUAD WXS tissue_normal CPT0197040006 e31d95da-7853-4d6b-96dd-bc411049691d_wxs_gdc_realn.bam 30583756872 BAM harmonized CPTAC3 26a1285b-0312-40cd-b83e-536e93ea43e7 01f113e98ce5b64cc311204ad20f02d3 {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02893.WXS.N C3L-02893 LUAD WXS blood_normal CPT0197820002 CPT0197820002.WholeExome.RP-1303.bam 28550477824 BAM aligned CPTAC3 9d02869d-2de2-49bd-9f3c-a901a2a495d5 bc892ff7b7266167dff882d560f95375 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02893.WXS.N.hg38 C3L-02893 LUAD WXS blood_normal CPT0197820002 82551fd4-96fd-4a18-9f23-2564f03cfb37_wxs_gdc_realn.bam 39194336953 BAM harmonized CPTAC3 58f5c055-22a9-4811-b0cd-ac8a51d7f443 9c64d452490eaf8db073972362a8c255 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02893.WXS.T C3L-02893 LUAD WXS tumor CPT0197030006 CPT0197030006.WholeExome.RP-1303.bam 23173080098 BAM aligned CPTAC3 30397ca2-7d91-4093-b3dd-ca9117c601ba 207b48aad48892b89d2dc7ba89fd2059 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor"} -C3L-02893.WXS.T.hg38 C3L-02893 LUAD WXS tumor CPT0197030006 52cb658d-2bc0-4319-9868-58221c5811e2_wxs_gdc_realn.bam 32239354582 BAM harmonized CPTAC3 b1fa048c-1d8c-458e-93f7-a5b356dd1284 eb018f1475df39f910470276bab433ae {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor"} -C3L-02894.MethArray.Green.T C3L-02894 UCEC Methylation_Array tumor CPT0196790007 203561450100_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1baa6a7b-ea29-45d1-81b5-91c8fd02658a 65683dbf879d29410c159158de1d4d1e {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor"} -C3L-02894.MethArray.Red.T C3L-02894 UCEC Methylation_Array tumor CPT0196790007 203561450100_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 66dd59fc-ffec-44b4-a40e-f3b4daa3ae19 875736a4574dc5e2a468f1d154b930b3 {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor"} -C3L-02894.miRNA-Seq.S22_L004_R1.T C3L-02894 UCEC miRNA-Seq tumor CPT0196790010 190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L004_R1_001.unaln.bam 150901424 BAM S22_L004_R1 unaligned CPTAC3 fe3131b9-7f71-479d-8ca7-eb9c9a3d205e 12e613492a4588fb83960a59e9bc962f {"aliquot_tag": "ALQ_7a2d0617", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02894.miRNA-Seq.T.hg38 C3L-02894 UCEC miRNA-Seq tumor CPT0196790010 8e3b7a7b-46ac-49fc-9483-6cd433a9035c_mirnaseq_gdc_realn.bam 172933657 BAM harmonized CPTAC3 9886acbe-1991-4e76-9170-81ec13498d84 fb25def2e9c0c46d5afc975c7fc7d117 {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.chimeric.gdc_realn.bam 41743867 BAM chimeric harmonized CPTAC3 2768da46-3068-4841-8ba5-00d667372572 9f5bd964c40b0feb40cd4f7a509cc323 {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.chimeric.gdc_realn.bam 182318624 BAM chimeric harmonized CPTAC3 0efad8be-7bd2-4c22-a93a-4b1614ca2331 46cb153570b147346c3dcd4a39965f76 {"aliquot_tag": "ALQ_dc250951", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.chimeric.gdc_realn.bam 278995891 BAM chimeric harmonized CPTAC3 fb8ca07a-1222-47a5-b16e-d6d312e36df5 afd4821339a50337badcbc83a37946da {"aliquot_tag": "ALQ_322b687d", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.genomic.gdc_realn.bam 8814091543 BAM genomic harmonized CPTAC3 febfabba-2bf6-4834-8a40-39745fea9e16 f4840ed201713251713c07f9abfc81f7 {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.genomic.gdc_realn.bam 9400060395 BAM genomic harmonized CPTAC3 00a4bfc6-9600-49d5-9206-b99cbb1cc784 c6d069ca51bc77489bf6e01e691d5878 {"aliquot_tag": "ALQ_dc250951", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.genomic.gdc_realn.bam 13306451306 BAM genomic harmonized CPTAC3 0bbde467-7463-4796-9e00-10af0573e2f5 b4a03bfc6a5d0bad3b57d8a199d80323 {"aliquot_tag": "ALQ_322b687d", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.S18_L005_R1.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 4192440536 FASTQ S18_L005_R1 unaligned CPTAC3 c03f6fe2-58c2-41d6-b026-4446e8439f88 84b0e6be794705bdb4d0c26bd8ace9ae {"aliquot_tag": "ALQ_7a2d0617", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.S18_L005_R2.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4741578598 FASTQ S18_L005_R2 unaligned CPTAC3 3b648a60-c5d5-454e-92c1-c1e23588fff3 2dc404f9513209d38bfbe02a36c7b665 {"aliquot_tag": "ALQ_7a2d0617", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.S1_R1.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R1_001.fastq.gz 5694982378 FASTQ S1_R1 unaligned CPTAC3 6f34cc4c-5d4a-4901-a9a1-3b29a8f762dd 6b381ee7206ed9f33c66d6f44c87e081 {"aliquot_tag": "ALQ_dc250951", "sample": "S1", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.S1_R2.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R2_001.fastq.gz 5897358182 FASTQ S1_R2 unaligned CPTAC3 abf9cdf8-9a49-471d-b5c1-50878e1cfa4e d1da2bb0dfdd8e55d50dc52c1406f694 {"aliquot_tag": "ALQ_dc250951", "sample": "S1", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.S71_R1.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R1_001.fastq.gz 8109773430 FASTQ S71_R1 unaligned CPTAC3 50594872-be0d-4dc4-8991-e4152860c955 0f84fa4216c3df8993aac1d8b5b21c63 {"aliquot_tag": "ALQ_322b687d", "sample": "S71", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.S71_R2.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R2_001.fastq.gz 8435403023 FASTQ S71_R2 unaligned CPTAC3 84951194-9d7d-422e-8572-c27d05daa703 32d0e6b3d16d62d0f5924002d04870ea {"aliquot_tag": "ALQ_322b687d", "sample": "S71", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.transcriptome.gdc_realn.bam 10129372511 BAM transcriptome harmonized CPTAC3 b9978377-ddc1-41db-945a-796d893ea2bb 30feab158efbdb2cd1ccd79d2e39be2c {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.transcriptome.gdc_realn.bam 5372786742 BAM transcriptome harmonized CPTAC3 204891be-43eb-41fe-b25e-c077ad07e3f6 33ee8fbaafef433a6b430135606f2acc {"aliquot_tag": "ALQ_dc250951", "gdc_sample_type": "Primary Tumor"} -C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.transcriptome.gdc_realn.bam 7783565384 BAM transcriptome harmonized CPTAC3 9f09415f-bb9c-4f47-952b-58796814ed44 2ec5c12b3fdec8e7a7a5990dc498c9a5 {"aliquot_tag": "ALQ_322b687d", "gdc_sample_type": "Primary Tumor"} -C3L-02894.WGS.N C3L-02894 UCEC WGS blood_normal CPT0197780002 CPT0197780002.WholeGenome.RP-1303.bam 68346330482 BAM aligned CPTAC3 2aad0b90-79ec-45bf-9905-a9473668bf6c afda16e239f52a157044096025f75cb2 {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02894.WGS.N.hg38 C3L-02894 UCEC WGS blood_normal CPT0197780002 08fe61b1-a4ad-4176-bb16-0c9bdfa98c13_wgs_gdc_realn.bam 102216615296 BAM harmonized CPTAC3 68919e37-7f72-4142-9056-d25bd6aae103 fbb48011c450a85d074427af59f6cb04 {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02894.WGS.T C3L-02894 UCEC WGS tumor CPT0196790007 CPT0196790007.WholeGenome.RP-1303.bam 78782532082 BAM aligned CPTAC3 8a75b1dd-21f7-4d45-aea5-391a3fb187a2 fc07e88060882c3c5a5bfb827bd71b72 {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor"} -C3L-02894.WGS.T.hg38 C3L-02894 UCEC WGS tumor CPT0196790007 c017f8ce-1f65-463e-9c1b-c045474baf34_wgs_gdc_realn.bam 116804697873 BAM harmonized CPTAC3 c1214a82-ee8f-4729-92d9-de3e20d4e534 672b51900bdce8796430b54940ee27fa {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor"} -C3L-02894.WXS.N C3L-02894 UCEC WXS blood_normal CPT0197780002 CPT0197780002.WholeExome.RP-1303.bam 25922356667 BAM aligned CPTAC3 6e3c7bd1-9769-4822-816d-1c88288cbc69 ecadc3317a9892367024a5ed67319283 {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02894.WXS.N.hg38 C3L-02894 UCEC WXS blood_normal CPT0197780002 08fe61b1-a4ad-4176-bb16-0c9bdfa98c13_wxs_gdc_realn.bam 35652223687 BAM harmonized CPTAC3 abd791ba-ff60-4e67-9dee-55b77f3028ba d320fa2958ffd87fd4d578051718f6ab {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02894.WXS.T C3L-02894 UCEC WXS tumor CPT0196790007 CPT0196790007.WholeExome.RP-1303.bam 24892676675 BAM aligned CPTAC3 032babf0-8cf7-4341-a5b6-efbff1c3b367 1f493a075a0548ddd581c87aedcb850e {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor"} -C3L-02894.WXS.T.hg38 C3L-02894 UCEC WXS tumor CPT0196790007 c017f8ce-1f65-463e-9c1b-c045474baf34_wxs_gdc_realn.bam 34013877396 BAM harmonized CPTAC3 07d02b27-c0c2-4318-ad8e-ba01a9e80823 775bd43baecef4f0c7dc65e709b75166 {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor"} -C3L-02897.miRNA-Seq.S13_L006_R1.T C3L-02897 PDA miRNA-Seq tumor CPT0217700010 190712_UNC32-K00270_0192_BH7HL3BBXY_CGGAAT_S13_L006_R1_001.unaln.bam 173523011 BAM S13_L006_R1 unaligned CPTAC3 57e90727-1ce1-4d1d-8844-1d48d3c4d33e 359d0204a18cc709b51b6bf2cfe8d1c0 {"aliquot_tag": "ALQ_3b2248a2", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02897.miRNA-Seq.T.hg38 C3L-02897 PDA miRNA-Seq tumor CPT0217700010 4b763714-284e-4291-8a50-ac1a9f7de21b_mirnaseq_gdc_realn.bam 196554601 BAM harmonized CPTAC3 53a4d217-2569-47e1-87a7-6caafcccba63 9250b2625051218cb6b9b841b3908f1c {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor"} -C3L-02897.RNA-Seq.chimeric.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.chimeric.gdc_realn.bam 36810848 BAM chimeric harmonized CPTAC3 536406d6-edad-474d-bbb7-6cc6c30b16e4 9bcdc9320e106a29ac869c1773fc56a6 {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor"} -C3L-02897.RNA-Seq.genomic.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.genomic.gdc_realn.bam 10234141614 BAM genomic harmonized CPTAC3 02897562-5bc3-4321-967c-8be945003df6 e7ad832353804db5bd6261ae879ddecf {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor"} -C3L-02897.RNA-Seq.S8_L003_R1.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R1_001.fastq.gz 4341150721 FASTQ S8_L003_R1 unaligned CPTAC3 629ce841-44b4-46c3-a0eb-43ac05005930 18752cfdf53add4d53eddda4ba0c4eba {"aliquot_tag": "ALQ_3b2248a2", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02897.RNA-Seq.S8_L003_R2.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R2_001.fastq.gz 4549041539 FASTQ S8_L003_R2 unaligned CPTAC3 99f87dd5-26dd-40e8-aa30-88673abbab58 85709ee411184d41b21ec192bd99ac36 {"aliquot_tag": "ALQ_3b2248a2", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02897.RNA-Seq.transcriptome.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.transcriptome.gdc_realn.bam 12498821711 BAM transcriptome harmonized CPTAC3 2929e642-4426-4493-80a5-a8de73ed0925 fa807e08372777f472edc769c6cf73b1 {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor"} -C3L-02897.WGS.N C3L-02897 PDA WGS blood_normal CPT0219810002 CPT0219810002.WholeGenome.RP-1303.bam 72888767770 BAM aligned CPTAC3 ac647f2e-5a8c-4770-9e33-eb8a357a5533 54d1e92e420b706bcf387e32abb17207 {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02897.WGS.N.hg38 C3L-02897 PDA WGS blood_normal CPT0219810002 5884a7e5-1c56-49c7-aece-8650d523d6f7_wgs_gdc_realn.bam 106274527377 BAM harmonized CPTAC3 45104f69-10c8-4774-bb5a-0e7aa70ecec8 d1a7362cf8f3c8ffc6adab1d16a7f9fb {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02897.WGS.T C3L-02897 PDA WGS tumor CPT0217700007 CPT0217700007.WholeGenome.RP-1303.bam 67039044890 BAM aligned CPTAC3 e1af413b-c1c9-4b49-ad2b-c15f50a33f25 fce33aed2019c7c3c85e418c62244c55 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor"} -C3L-02897.WGS.T.hg38 C3L-02897 PDA WGS tumor CPT0217700007 147315d9-f032-40de-b5b9-a1672fa29113_wgs_gdc_realn.bam 100640487110 BAM harmonized CPTAC3 d677b74b-1368-439f-b67c-76f7c821921d 8c2a923188fa92b4d39fcb3036ba0114 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor"} -C3L-02897.WXS.N C3L-02897 PDA WXS blood_normal CPT0219810002 CPT0219810002.WholeExome.RP-1303.bam 31870349184 BAM aligned CPTAC3 89b569ce-4d36-420c-b1ab-941158792d59 535e035c75c1499c705192d7603bf323 {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02897.WXS.N.hg38 C3L-02897 PDA WXS blood_normal CPT0219810002 5884a7e5-1c56-49c7-aece-8650d523d6f7_wxs_gdc_realn.bam 44183817987 BAM harmonized CPTAC3 09a6cd39-77f2-4d56-8877-11c05369e891 eb1dfb71adb3cebfb05e5b8e26c725a0 {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-02897.WXS.T C3L-02897 PDA WXS tumor CPT0217700007 CPT0217700007.WholeExome.RP-1303.bam 22104816810 BAM aligned CPTAC3 94f81bd9-3060-4c95-b8eb-5262c86dfd3a d3499620e5e4097bee46a4248085f351 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor"} -C3L-02897.WXS.T.hg38 C3L-02897 PDA WXS tumor CPT0217700007 147315d9-f032-40de-b5b9-a1672fa29113_wxs_gdc_realn.bam 30207586921 BAM harmonized CPTAC3 fdac36b6-d7f6-4477-8b06-31fdc3030d46 65c5253101c562861203657a77362286 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor"} -C3L-02899.MethArray.Green.A C3L-02899 PDA Methylation_Array tissue_normal CPT0197440007 203561450046_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4e88667b-d205-4eaf-a717-bde6d09d151b 40fe83fcbc7d9318d38fecd220e5999b {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.MethArray.Red.A C3L-02899 PDA Methylation_Array tissue_normal CPT0197440007 203561450046_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 c1d76bc8-d0c8-45b1-8384-ee605dfccabd 8a47d9719e49b91e37293aaa3cfd11a9 {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.miRNA-Seq.A.hg38 C3L-02899 PDA miRNA-Seq tissue_normal CPT0197440010 7775143e-2d32-4967-9eb0-81229b088238_mirnaseq_gdc_realn.bam 333995918 BAM harmonized CPTAC3 298bce26-73c6-4f22-87c2-31a6af566cc1 93a0b16bf1e466e21f3f314d2aaa574c {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.miRNA-Seq.S35_L002_R1.A C3L-02899 PDA miRNA-Seq tissue_normal CPT0197440010 190813_UNC32-K00270_0196_AH5MCWBBXY_GCCAAT_S35_L002_R1_001.unaln.bam 295752248 BAM S35_L002_R1 unaligned CPTAC3 b88dc1b1-eddc-4c55-9aff-d5c094bf3950 9617d9823d6453af8a950d63f2e07534 {"aliquot_tag": "ALQ_a25ebbbc", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.miRNA-Seq.S3_L006_R1.T C3L-02899 PDA miRNA-Seq tumor CPT0197420010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATTCCT_S3_L006_R1_001.unaln.bam 183927635 BAM S3_L006_R1 unaligned CPTAC3 7a16fc15-4e40-4571-ac1c-10c16020a475 9c4f0abbe2ecc3e14744e7c6ae1719b5 {"aliquot_tag": "ALQ_2d1e4e1c", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02899.miRNA-Seq.T.hg38 C3L-02899 PDA miRNA-Seq tumor CPT0197420010 538b1edf-ed98-408e-a04a-325816db905d_mirnaseq_gdc_realn.bam 210166735 BAM harmonized CPTAC3 aada5e60-54eb-4ba7-989e-e1d7f58a740e b0543a2d2c16a15399236bab6d138c31 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor"} -C3L-02899.RNA-Seq.chimeric.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.chimeric.gdc_realn.bam 36292961 BAM chimeric harmonized CPTAC3 133aba17-d8c0-4809-a2ef-00a99e0c535c 904f3e0f81cb806624579b99154f3ea2 {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.RNA-Seq.chimeric.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.chimeric.gdc_realn.bam 44836679 BAM chimeric harmonized CPTAC3 76fafad4-c728-4fc5-be0f-2ff6dbdf02d4 3d76098e2a7237b7dbf76ebb96388a51 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor"} -C3L-02899.RNA-Seq.genomic.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.genomic.gdc_realn.bam 7721879689 BAM genomic harmonized CPTAC3 2805f649-a644-40f8-8338-4152e87ac186 1f2f82c442468f2534d86f3f34723000 {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.RNA-Seq.genomic.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.genomic.gdc_realn.bam 11762843474 BAM genomic harmonized CPTAC3 1edb2b1e-d7e0-4482-a5a5-5c634957d266 9f645bc145a91c8695bfb498b1ce73c4 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor"} -C3L-02899.RNA-Seq.S28_L007_R1.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R1_001.fastq.gz 4407488559 FASTQ S28_L007_R1 unaligned CPTAC3 0360979a-14eb-4e86-9e58-f21bdd2a772b fd8f54360a2ac4480233b5758f4fc3ae {"aliquot_tag": "ALQ_2d1e4e1c", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02899.RNA-Seq.S28_L007_R2.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R2_001.fastq.gz 4901697953 FASTQ S28_L007_R2 unaligned CPTAC3 e71c4035-8b43-4fc3-81ed-4f367fd259ee c5dcc23405a4b41c461ded2c68f5ebd0 {"aliquot_tag": "ALQ_2d1e4e1c", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02899.RNA-Seq.S8_L002_R1.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R1_001.fastq.gz 3949078775 FASTQ S8_L002_R1 unaligned CPTAC3 0cd72a75-dc9b-47b8-aeaa-0920e311135a 1de99857f7969ad3f61a5413f1a3cd46 {"aliquot_tag": "ALQ_a25ebbbc", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.RNA-Seq.S8_L002_R2.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R2_001.fastq.gz 4058775194 FASTQ S8_L002_R2 unaligned CPTAC3 7c3252a4-ed1f-4eb3-9648-6ca66565fb6a 40977a392c4c4efd9a40b8f2db268c8a {"aliquot_tag": "ALQ_a25ebbbc", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.RNA-Seq.transcriptome.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.transcriptome.gdc_realn.bam 10052771077 BAM transcriptome harmonized CPTAC3 b3002632-ff46-4a25-8201-a86a215f29cd 21d0e0db64f985abf5548c4ad525728d {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.RNA-Seq.transcriptome.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.transcriptome.gdc_realn.bam 11550240121 BAM transcriptome harmonized CPTAC3 7affe9b2-9037-43c1-8f6b-d4de5f851f04 4ba953acff68a61492948d96fb8bb6e1 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor"} -C3L-02899.Targeted.T C3L-02899 PDA Targeted_Sequencing tumor CPT0197420007 CPT0197420007.CustomSelection.RP-1303.PDO-18786.bam 6166110820 BAM aligned CPTAC3 2425ef6e-f824-4c3b-bd7c-cf4d2c2fe3c5 ea1e2ee069b702d46c1a73bf8883331d {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor"} -C3L-02899.Targeted.T.hg38 C3L-02899 PDA Targeted_Sequencing tumor CPT0197420007 e6eea8e8-9822-4b69-bba2-6d8db475bf86_targetedsequencing_gdc_realn.bam 8537214150 BAM harmonized CPTAC3 f6ac7a16-2f98-4565-ba3e-3db92cc7c6ac 0b0406ca4df08c41f247e3e6538eea6a {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor"} -C3L-02899.WGS.N C3L-02899 PDA WGS blood_normal CPT0199150002 CPT0199150002.WholeGenome.RP-1303.bam 80146903329 BAM aligned CPTAC3 3c1e8a34-1aed-48e0-aeaa-96f31c638c96 9b442d8ba616a0854c33560a52e6195d {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02899.WGS.N.hg38 C3L-02899 PDA WGS blood_normal CPT0199150002 182d8a2f-9eb2-43fc-9c77-a08345542b7c_wgs_gdc_realn.bam 117038576311 BAM harmonized CPTAC3 7acea6e2-73b4-4889-9b47-7f1010a1e836 c9046e4f001c07c7dd8deb0eb3e9a603 {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02899.WGS.T C3L-02899 PDA WGS tumor CPT0197420007 CPT0197420007.WholeGenome.RP-1303.bam 65733445430 BAM aligned CPTAC3 4d66ed15-f0e8-401f-9123-fc67b870d9af e91d6fe734d98aecadf8bc09d7d4de46 {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor"} -C3L-02899.WGS.T.hg38 C3L-02899 PDA WGS tumor CPT0197420007 e6eea8e8-9822-4b69-bba2-6d8db475bf86_wgs_gdc_realn.bam 96384088129 BAM harmonized CPTAC3 fd0abb1c-8e88-4f76-b767-c8292ca82f55 ee45dbf92dd493085b1c376b0c18e9a7 {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor"} -C3L-02899.WXS.A C3L-02899 PDA WXS tissue_normal CPT0197440007 CPT0197440007.WholeExome.RP-1303.bam 28475275478 BAM aligned CPTAC3 96c8cb87-89d8-4ca0-87d0-f1649b574cd5 794c16ba931edc15909bd6da2d311862 {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.WXS.A.hg38 C3L-02899 PDA WXS tissue_normal CPT0197440007 d3e40f3c-2a50-4f0b-9247-ce6134c52c00_wxs_gdc_realn.bam 39374350484 BAM harmonized CPTAC3 bb7b4a14-9ee0-46ed-9408-e9f6cf91ace5 5b5e3c09fa1be11c5f0053983ed9375d {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02899.WXS.N C3L-02899 PDA WXS blood_normal CPT0199150002 CPT0199150002.WholeExome.RP-1303.bam 34119535700 BAM aligned CPTAC3 c70a5c5d-896b-49e7-9c70-9ba8f7d2ec81 b2b43f976a06466d4f006df6c579ca28 {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02899.WXS.N.hg38 C3L-02899 PDA WXS blood_normal CPT0199150002 182d8a2f-9eb2-43fc-9c77-a08345542b7c_wxs_gdc_realn.bam 47132823183 BAM harmonized CPTAC3 77728f8c-fe5d-42b7-8d8c-ccb36208cbe4 5dbf9223ec5ab66510dc365903a70d67 {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02899.WXS.T C3L-02899 PDA WXS tumor CPT0197420007 CPT0197420007.WholeExome.RP-1303.bam 30533239221 BAM aligned CPTAC3 bb4ff56f-1b50-49bb-9d1b-a85273361ca0 d5f2f45f2f18b4e7f77eaa0f335f885e {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor"} -C3L-02899.WXS.T.hg38 C3L-02899 PDA WXS tumor CPT0197420007 e6eea8e8-9822-4b69-bba2-6d8db475bf86_wxs_gdc_realn.bam 42795907897 BAM harmonized CPTAC3 187f43cf-2d08-420c-b9f5-38fbff8c91e2 03a6e43978fa716f105fb9b550bb91ae {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor"} -C3L-02900.MethArray.Green.T C3L-02900 GBM Methylation_Array tumor CPT0218670006 203219650071_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 217b94af-0969-492a-8ad1-98373c583823 9a7182f21b42e65c14ef728d8b9b5047 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor"} -C3L-02900.MethArray.Red.T C3L-02900 GBM Methylation_Array tumor CPT0218670006 203219650071_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 52ad2a04-e59e-446d-a8d5-a468dbbcb0aa c25cec41bbe9b915e364b66e81540465 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor"} -C3L-02900.miRNA-Seq.S18_L008_R1.T C3L-02900 GBM miRNA-Seq tumor CPT0218670009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L008_R1_001.unaln.bam 270496443 BAM S18_L008_R1 unaligned CPTAC3 aa55b363-37b3-4110-890a-29dd4cc28072 0ef86a065d5806b5c122fcba20fa5351 {"aliquot_tag": "ALQ_d4d1be1b", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02900.miRNA-Seq.T.hg38 C3L-02900 GBM miRNA-Seq tumor CPT0218670009 af9de5cd-08fe-4d2a-a18f-714b19a602df_mirnaseq_gdc_realn.bam 308545988 BAM harmonized CPTAC3 fd2814f0-cac8-4639-b82e-c61fe5aadee4 280a751faf272ab84f519553685afdbb {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor"} -C3L-02900.RNA-Seq.chimeric.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.chimeric.gdc_realn.bam 38940989 BAM chimeric harmonized CPTAC3 9ec8319e-d82d-45ff-94ef-1ac9b02615eb 4e150fe68b2f0e035e402a64f891540c {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor"} -C3L-02900.RNA-Seq.genomic.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.genomic.gdc_realn.bam 8316235781 BAM genomic harmonized CPTAC3 84b8113b-0daf-4807-a4f1-fb03d3186105 0b683b448d87042b066c482b4c6ef5b5 {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor"} -C3L-02900.RNA-Seq.S5_L006_R1.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R1_001.fastq.gz 3747926637 FASTQ S5_L006_R1 unaligned CPTAC3 ce9d64d7-7245-43fc-b9c3-83b8099af70c bf16f687b2195dbb500992a635232521 {"aliquot_tag": "ALQ_d4d1be1b", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02900.RNA-Seq.S5_L006_R2.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R2_001.fastq.gz 3922660448 FASTQ S5_L006_R2 unaligned CPTAC3 ed8d7108-a0fc-4c05-88c7-b36c2a46344f 80008753978f47fe2412e7a11b66f800 {"aliquot_tag": "ALQ_d4d1be1b", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02900.RNA-Seq.transcriptome.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.transcriptome.gdc_realn.bam 9708338164 BAM transcriptome harmonized CPTAC3 065ddded-5b27-4ab6-b379-8bb5247aa601 c3cccabe45dc037a0d383da8d2eaab54 {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor"} -C3L-02900.WGS.N C3L-02900 GBM WGS blood_normal CPT0219910002 CPT0219910002.WholeGenome.RP-1303.bam 65972536465 BAM aligned CPTAC3 57efdbaa-b7f4-4402-8a43-11053f1b6b91 3a77e3788e1ba38ca0808692df38fd2c {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal"} -C3L-02900.WGS.N.hg38 C3L-02900 GBM WGS blood_normal CPT0219910002 6264f251-942e-4eb8-a787-58c3a28a6d66_wgs_gdc_realn.bam 95457873554 BAM harmonized CPTAC3 6ac20d11-64f1-4a61-9d85-5b7463206ccd 3713984b72195fac1bb2a9f7c19afaf3 {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal"} -C3L-02900.WGS.T C3L-02900 GBM WGS tumor CPT0218670006 CPT0218670006.WholeGenome.RP-1303.bam 64537343313 BAM aligned CPTAC3 a7fd2377-4d75-4538-9da4-f6e11de7edf7 47cb9c020094f8bb15661b1779669e26 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor"} -C3L-02900.WGS.T.hg38 C3L-02900 GBM WGS tumor CPT0218670006 31973fc9-0507-456d-be4a-1a696ea3cf34_wgs_gdc_realn.bam 94007884048 BAM harmonized CPTAC3 abca7dea-8322-4871-b75c-51642cccd475 a06bcef1b29b81bcd0787e1a152b037e {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor"} -C3L-02900.WXS.N C3L-02900 GBM WXS blood_normal CPT0219910002 CPT0219910002.WholeExome.RP-1303.bam 23770184168 BAM aligned CPTAC3 61deac03-1e86-452f-b3d8-3fb09b54e40f 069bdc5c71889e509e0db1486bcd311e {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal"} -C3L-02900.WXS.N.hg38 C3L-02900 GBM WXS blood_normal CPT0219910002 6264f251-942e-4eb8-a787-58c3a28a6d66_wxs_gdc_realn.bam 32458431549 BAM harmonized CPTAC3 d3bf35f7-29fa-4fb0-9930-9c858b616338 49c7852feeaae03ccec3c5e098aad28c {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal"} -C3L-02900.WXS.T C3L-02900 GBM WXS tumor CPT0218670006 CPT0218670006.WholeExome.RP-1303.bam 20935138758 BAM aligned CPTAC3 27b62d6d-444b-4dee-9afd-eacb6a77ea09 42bebc1d8a0630432516878547e4abf3 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor"} -C3L-02900.WXS.T.hg38 C3L-02900 GBM WXS tumor CPT0218670006 31973fc9-0507-456d-be4a-1a696ea3cf34_wxs_gdc_realn.bam 29349254639 BAM harmonized CPTAC3 be8dfbc7-4022-4180-a77a-7098bfe6a03f 476827cb1988d1eb8a91b56571a28aad {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor"} -C3L-02951.MethArray.Green.A C3L-02951 LSCC Methylation_Array tissue_normal CPT0197170009 203219650169_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0cfbc8be-827c-41d7-946d-1bd831fc516e c0c7ebe15fbd7d427a9320bef27bc928 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.MethArray.Green.T C3L-02951 LSCC Methylation_Array tumor CPT0197150009 203219720176_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 14286119-fa46-421e-8a72-869ea616dc51 643dedbc70849a4f5acd024bca40d67b {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor"} -C3L-02951.MethArray.Red.A C3L-02951 LSCC Methylation_Array tissue_normal CPT0197170009 203219650169_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 846137cd-1baa-4e72-ba00-bdebc0e18850 97cf7b4f3cf43e0507ee770aa9696e6b {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.MethArray.Red.T C3L-02951 LSCC Methylation_Array tumor CPT0197150009 203219720176_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 4eca88bf-4d14-406d-9c14-440ee9e6b792 7f0e2972ac12bdaf651113345273adc4 {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor"} -C3L-02951.miRNA-Seq.A.hg38 C3L-02951 LSCC miRNA-Seq tissue_normal CPT0197170006 d885eae0-6714-4ca3-9cff-bef883ea6b1c_mirnaseq_gdc_realn.bam 371308775 BAM harmonized CPTAC3 fa01460d-66b6-407f-a62f-6d14a8949140 1c22959e877c271c1d655f09c03e0846 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.miRNA-Seq.S10_L007_R1.A C3L-02951 LSCC miRNA-Seq tissue_normal CPT0197170006 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L007_R1_001.unaln.bam 329764146 BAM S10_L007_R1 unaligned CPTAC3 a442a54c-fc57-41ee-aef2-926600134864 858c84d2f1d8ebbfa3528aadcc0faccf {"aliquot_tag": "ALQ_454bc4ab", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.miRNA-Seq.S21_L003_R1.T C3L-02951 LSCC miRNA-Seq tumor CPT0197150006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTTTCG_S21_L003_R1_001.unaln.bam 129513063 BAM S21_L003_R1 unaligned CPTAC3 1cd59c92-95fb-4c2f-8e26-66a2f5222be8 57508054e79e584fa281127bfbbb87d0 {"aliquot_tag": "ALQ_3f8b97cb", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02951.miRNA-Seq.T.hg38 C3L-02951 LSCC miRNA-Seq tumor CPT0197150006 72985909-0550-430a-a8c1-4b473afde62b_mirnaseq_gdc_realn.bam 147626148 BAM harmonized CPTAC3 99af2f35-2b00-4291-8bfd-8dc3da0ba8f1 b61e6f77778d95bb37818c2977b11d2a {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor"} -C3L-02951.RNA-Seq.chimeric.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.chimeric.gdc_realn.bam 38744954 BAM chimeric harmonized CPTAC3 e42e0e24-9dfb-4ab3-8e7a-c0fb69a11166 624a49084e6c29dcc37cab4bd408d690 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.RNA-Seq.chimeric.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.chimeric.gdc_realn.bam 100758197 BAM chimeric harmonized CPTAC3 9ad39258-2668-46fc-9353-bc14c111743b 81f1cffea2b0bfd041b2d9fe62fb27d3 {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor"} -C3L-02951.RNA-Seq.genomic.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.genomic.gdc_realn.bam 7656000339 BAM genomic harmonized CPTAC3 485b5cb0-e380-4164-9844-c92554440a7b 38de885e5ace8c0063da88685241a488 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.RNA-Seq.genomic.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.genomic.gdc_realn.bam 9037763584 BAM genomic harmonized CPTAC3 83b04a94-1e32-45ad-82e9-4514a9285704 6f64b3c6370eb3b04b2faec81016e3db {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor"} -C3L-02951.RNA-Seq.S15_L004_R1.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R1_001.fastq.gz 3733021017 FASTQ S15_L004_R1 unaligned CPTAC3 52ed1a7a-21a2-4723-9c10-f9ab61ebded1 82f2654a24efa22596de9ca384f3051e {"aliquot_tag": "ALQ_454bc4ab", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.RNA-Seq.S15_L004_R2.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R2_001.fastq.gz 3719756463 FASTQ S15_L004_R2 unaligned CPTAC3 fdbb3ee9-6312-4094-913d-ad95d73301b0 5c3f556988dcf1b5abac693b0343dd5e {"aliquot_tag": "ALQ_454bc4ab", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.RNA-Seq.S31_L007_R1.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R1_001.fastq.gz 3824514385 FASTQ S31_L007_R1 unaligned CPTAC3 516c640a-c178-4bd0-87e8-203ae1af4ff3 1ef5f2dbe9ec7d21b8e351b929e01076 {"aliquot_tag": "ALQ_3f8b97cb", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02951.RNA-Seq.S31_L007_R2.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R2_001.fastq.gz 4130462294 FASTQ S31_L007_R2 unaligned CPTAC3 7c9a2e6d-0af7-45f5-afff-ab09ba86dbd6 caa6b4e1f2bad421ac4a1f1ee32844cc {"aliquot_tag": "ALQ_3f8b97cb", "sample": "S31", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02951.RNA-Seq.transcriptome.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.transcriptome.gdc_realn.bam 10025001487 BAM transcriptome harmonized CPTAC3 30ab7550-be6e-4f18-9f99-44a8e7d764e8 8cb8438d9d44e2cafa26c94e8a336119 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.RNA-Seq.transcriptome.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.transcriptome.gdc_realn.bam 11828760220 BAM transcriptome harmonized CPTAC3 61052aa7-de8f-4e84-b60e-e351eaeac151 6d1740b1e10241d9fd3c540cb1e704bf {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor"} -C3L-02951.WGS.A C3L-02951 LSCC WGS tissue_normal CPT0197170009 CPT0197170009.WholeGenome.RP-1303.bam 68691099892 BAM aligned CPTAC3 c6d7a343-9244-41a2-820c-66cfc91ab31a 845aad49b0afcb78029d8d0f17cb5614 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.WGS.A.hg38 C3L-02951 LSCC WGS tissue_normal CPT0197170009 8346e137-57c1-4c12-ad48-0fb8561ff80e_wgs_gdc_realn.bam 99463677477 BAM harmonized CPTAC3 9489071b-55d3-4f2e-83a8-5859c8a9641c ef278c24630f5cb0522ab53bac31b9f9 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.WGS.N C3L-02951 LSCC WGS blood_normal CPT0197840002 CPT0197840002.WholeGenome.RP-1303.bam 51282937574 BAM aligned CPTAC3 b3358590-0bea-49c3-b400-4a048eae90e9 2ec2756bfdd3e1d605d07be1c93071d3 {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02951.WGS.N.hg38 C3L-02951 LSCC WGS blood_normal CPT0197840002 4df1dc43-1efa-4b94-b67a-20022c5480d9_wgs_gdc_realn.bam 74168944308 BAM harmonized CPTAC3 a9df6ab2-8f0a-485e-a5e7-1dbe20db6169 664394feccb4fb3771db5fc8ce1853da {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02951.WGS.T C3L-02951 LSCC WGS tumor CPT0197150009 CPT0197150009.WholeGenome.RP-1303.bam 54880218309 BAM aligned CPTAC3 9e6cf66d-c8fe-4a5e-9137-2940caf21a05 95eabc0d250c4e7076972fa8616f791b {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor"} -C3L-02951.WGS.T.hg38 C3L-02951 LSCC WGS tumor CPT0197150009 773198bc-d32a-4963-b33a-af0793609e9a_wgs_gdc_realn.bam 79044046007 BAM harmonized CPTAC3 75aef4ef-f9ef-40f5-90f1-2f8d627efcb0 9aee8076de1c55f976db613bd0656fde {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor"} -C3L-02951.WXS.A C3L-02951 LSCC WXS tissue_normal CPT0197170009 CPT0197170009.WholeExome.RP-1303.bam 28714652759 BAM aligned CPTAC3 d2539bc6-9b5b-4574-a9ca-de37801522e4 79a4cbaa598b97d3322331257db0d76c {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.WXS.A.hg38 C3L-02951 LSCC WXS tissue_normal CPT0197170009 8346e137-57c1-4c12-ad48-0fb8561ff80e_wxs_gdc_realn.bam 38999254243 BAM harmonized CPTAC3 50c7c315-5e75-4844-a0c5-4c95ed604ecf c1d63b33677d3e0d65160118c0776ba5 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02951.WXS.N C3L-02951 LSCC WXS blood_normal CPT0197840002 CPT0197840002.WholeExome.RP-1303.bam 34531655335 BAM aligned CPTAC3 f18a616b-e67a-4e08-9902-da916fd6953a 41250a92f76deca220545bf57dd0a1b8 {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02951.WXS.N.hg38 C3L-02951 LSCC WXS blood_normal CPT0197840002 4df1dc43-1efa-4b94-b67a-20022c5480d9_wxs_gdc_realn.bam 46811514575 BAM harmonized CPTAC3 e8287cd5-5064-4d21-acb7-0bf366e3a13a 92fb122c5a6e21eae60ac4afb1ae568e {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal"} -C3L-02951.WXS.T C3L-02951 LSCC WXS tumor CPT0197150009 CPT0197150009.WholeExome.RP-1303.bam 23315658617 BAM aligned CPTAC3 6bba58a5-3c08-409a-b76d-9a0928b5bda0 888768503cf5b3449a823d869c331e5f {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor"} -C3L-02951.WXS.T.hg38 C3L-02951 LSCC WXS tumor CPT0197150009 773198bc-d32a-4963-b33a-af0793609e9a_wxs_gdc_realn.bam 32313366048 BAM harmonized CPTAC3 2a3c944f-607b-4ab1-8829-3dd2a77da2ef 35f7dc21aa35e63677dbe0455f71020c {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor"} -C3L-02953.MethArray.Green.T C3L-02953 UCEC Methylation_Array tumor CPT0161590011 203561620089_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 38dffe0e-8d8c-4b53-96f2-54699a6f8f81 f20a6f58bf01bb8c5f0564fb8e25c13d {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor"} -C3L-02953.MethArray.Red.T C3L-02953 UCEC Methylation_Array tumor CPT0161590011 203561620089_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 1bb9317e-2420-4137-8118-97a9659ac1f0 7ea1976ad3cd5412f2bdaefff7802877 {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor"} -C3L-02953.miRNA-Seq.S9_L003_R1.T C3L-02953 UCEC miRNA-Seq tumor CPT0161590014 190508_UNC31-K00269_0215_BH7FYKBBXY_GATCAG_S9_L003_R1_001.unaln.bam 182131109 BAM S9_L003_R1 unaligned CPTAC3 2fe6bc12-00ce-4115-bc49-c20ba3b6cc96 d6bc40885472ab95d3f5a8c86f347d71 {"aliquot_tag": "ALQ_2c0f4f27", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02953.miRNA-Seq.T.hg38 C3L-02953 UCEC miRNA-Seq tumor CPT0161590014 7533afe2-28a2-4dac-b7cf-c4ee4d92cfc5_mirnaseq_gdc_realn.bam 205883099 BAM harmonized CPTAC3 ef4a3c2c-63c0-4b3c-8d81-a7e0f06a9e8a e88283b59880dab4145f2e4f6b06e89a {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.chimeric.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.chimeric.gdc_realn.bam 36576593 BAM chimeric harmonized CPTAC3 b2ff1b2b-16f4-459b-a010-7ba8ea1f71cf 8bc062b28d9b7e01f3dae1cc3be62b3c {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.chimeric.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.chimeric.gdc_realn.bam 156544559 BAM chimeric harmonized CPTAC3 bd2a2d2c-7f50-4475-84de-f741588609ee d51774222b8dc9888b07943224bb936b {"aliquot_tag": "ALQ_e14520e1", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.genomic.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.genomic.gdc_realn.bam 8715154184 BAM genomic harmonized CPTAC3 2c02422d-904e-4a09-8714-651a828d1840 79b6287b44e6d8eb7429e5bdb977ac9b {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.genomic.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.genomic.gdc_realn.bam 8528697775 BAM genomic harmonized CPTAC3 909c4090-6fa8-4ad6-ad7b-a2937273d2b8 757bfba03084a8abd3c8fd17eef96824 {"aliquot_tag": "ALQ_e14520e1", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.S29_L008_R1.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R1_001.fastq.gz 4097115923 FASTQ S29_L008_R1 unaligned CPTAC3 0cf1a940-7d2c-47ed-84b2-25088542b094 655d7a04ed020819d18bc5576c43ac32 {"aliquot_tag": "ALQ_2c0f4f27", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.S29_L008_R2.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R2_001.fastq.gz 4793311223 FASTQ S29_L008_R2 unaligned CPTAC3 aa7f2353-a16a-40d5-b1df-bf3c3ec433a2 a0449e04ebbc42c9f22c05fcac0fe511 {"aliquot_tag": "ALQ_2c0f4f27", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.S59_R1.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R1_001.fastq.gz 5030440707 FASTQ S59_R1 unaligned CPTAC3 2cc8674b-65fa-4add-9ead-07ee6ebd3824 8f5fbae8a76994cd9d614dbd408ac97c {"aliquot_tag": "ALQ_e14520e1", "sample": "S59", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.S59_R2.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R2_001.fastq.gz 5191907036 FASTQ S59_R2 unaligned CPTAC3 2915e2af-868e-4824-a858-2efe59097325 3da45196f1b00e069d5f9c9a0dcda7ae {"aliquot_tag": "ALQ_e14520e1", "sample": "S59", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.transcriptome.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.transcriptome.gdc_realn.bam 11242818702 BAM transcriptome harmonized CPTAC3 edddd5cf-90af-4121-9629-74cd8f5a35b3 74db8975e9b52e693ec877754d5cffdc {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor"} -C3L-02953.RNA-Seq.transcriptome.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.transcriptome.gdc_realn.bam 4417592853 BAM transcriptome harmonized CPTAC3 b1b0d675-cc73-41ed-97a6-268bec3bd4a8 a5d004c892b0357f41897459249e02ee {"aliquot_tag": "ALQ_e14520e1", "gdc_sample_type": "Primary Tumor"} -C3L-02953.WGS.N C3L-02953 UCEC WGS blood_normal CPT0162520002 CPT0162520002.WholeGenome.RP-1303.bam 78834093706 BAM aligned CPTAC3 a912179c-8e94-4098-b690-b70059d66043 820e0dc8f463627c37ab0213f858aa04 {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal"} -C3L-02953.WGS.N.hg38 C3L-02953 UCEC WGS blood_normal CPT0162520002 9bc1bf3d-4c79-4144-bef0-90730270b764_wgs_gdc_realn.bam 115309510897 BAM harmonized CPTAC3 06bdc9bb-c645-4a26-a2fe-2a38b175b531 cb5a45898fb09312c55ef14232403efa {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal"} -C3L-02953.WGS.T C3L-02953 UCEC WGS tumor CPT0161590011 CPT0161590011.WholeGenome.RP-1303.bam 83906829976 BAM aligned CPTAC3 f52db603-3db8-4877-9420-472156b5f5f8 57900db0c4f5e1ad37e8fd599365fc0d {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor"} -C3L-02953.WGS.T.hg38 C3L-02953 UCEC WGS tumor CPT0161590011 e420eef5-8b13-49c1-ab87-f9138d283c9a_wgs_gdc_realn.bam 118165266587 BAM harmonized CPTAC3 e4493f47-d3c8-426c-a1c5-68e2217a1736 4116873d51f9f37cd1811e03bd53791d {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor"} -C3L-02953.WXS.N C3L-02953 UCEC WXS blood_normal CPT0162520002 CPT0162520002.WholeExome.RP-1303.bam 22512211371 BAM aligned CPTAC3 538532dc-d19a-4879-bf99-64c52c73c4db 73f04097e65395d8a59e7dd4668526bc {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal"} -C3L-02953.WXS.N.hg38 C3L-02953 UCEC WXS blood_normal CPT0162520002 9bc1bf3d-4c79-4144-bef0-90730270b764_wxs_gdc_realn.bam 30788634180 BAM harmonized CPTAC3 5aaf068a-0d37-4dab-a45f-7ea22c8b2ca4 4f6376bc2578012080d6df9428132622 {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal"} -C3L-02953.WXS.T C3L-02953 UCEC WXS tumor CPT0161590011 CPT0161590011.WholeExome.RP-1303.bam 21992805796 BAM aligned CPTAC3 641ef11a-73e7-4904-8834-20ddf7774db9 a0cfe5643ddb4d7aa36189bf4723cdc5 {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor"} -C3L-02953.WXS.T.hg38 C3L-02953 UCEC WXS tumor CPT0161590011 e420eef5-8b13-49c1-ab87-f9138d283c9a_wxs_gdc_realn.bam 31033445120 BAM harmonized CPTAC3 69b75aeb-dfa0-4444-8ec2-d3812f817f21 d16bdcd99acc327ac2784b370f5e9a17 {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor"} -C3L-02954.MethArray.Green.A C3L-02954 LUAD Methylation_Array tissue_normal CPT0161900006 203561450068_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 5dadb4c8-c1e5-47a7-a3db-e2dd392db81b 865016c30450f6c8f331a1f6357117f7 {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.MethArray.Green.T C3L-02954 LUAD Methylation_Array tumor CPT0161890006 203561450046_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 35eda005-c4b9-4516-964e-ad1fc8d0e1d5 7faa033717344464e64a4c18b313ff88 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor"} -C3L-02954.MethArray.Red.A C3L-02954 LUAD Methylation_Array tissue_normal CPT0161900006 203561450068_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 88ba3a17-a568-4dec-8f37-3f7990171cf2 32c2168ee930b961585c438b4fca14ce {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.MethArray.Red.T C3L-02954 LUAD Methylation_Array tumor CPT0161890006 203561450046_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 0c1c3ec5-5a1d-4a93-94d9-b58d432f162c 65085231455f16cdd54d443b6c4ee898 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor"} -C3L-02954.miRNA-Seq.A.hg38 C3L-02954 LUAD miRNA-Seq tissue_normal CPT0161900009 0b6c9fa0-bbbd-4a54-86cd-f4f00314f962_mirnaseq_gdc_realn.bam 215754971 BAM harmonized CPTAC3 4e833128-a70a-4165-8ac3-0b2a20181400 ec31fed0b6b0726123addfd8a724fc1d {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.miRNA-Seq.S12_L005_R1.T C3L-02954 LUAD miRNA-Seq tumor CPT0161890009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCGTCC_S12_L005_R1_001.unaln.bam 164738137 BAM S12_L005_R1 unaligned CPTAC3 2930e683-3884-44fe-a72f-356871cbdf62 027e4b45b4e8244773b710e9fb9b1abe {"aliquot_tag": "ALQ_f73b1105", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02954.miRNA-Seq.S28_L007_R1.A C3L-02954 LUAD miRNA-Seq tissue_normal CPT0161900009 190712_UNC32-K00270_0192_BH7HL3BBXY_ACAGTG_S28_L007_R1_001.unaln.bam 187752988 BAM S28_L007_R1 unaligned CPTAC3 ec7cf79a-9f46-4708-80a6-6df020ec4683 8028971ee70d18f5f5354a36d2462c32 {"aliquot_tag": "ALQ_3177a0d1", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.miRNA-Seq.T.hg38 C3L-02954 LUAD miRNA-Seq tumor CPT0161890009 5fbbc952-b7cb-4ac5-b61c-836a4545cd76_mirnaseq_gdc_realn.bam 182839501 BAM harmonized CPTAC3 d3a447ff-a44d-4b49-b23f-cfe5e3816acd 21af8a7e43473a44ddd924b6879d2481 {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor"} -C3L-02954.RNA-Seq.chimeric.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.chimeric.gdc_realn.bam 66005115 BAM chimeric harmonized CPTAC3 c166a063-8252-47d3-a75a-035f407e2b5e 4fc956e30d1095da135a50ac5dac6000 {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.RNA-Seq.chimeric.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.chimeric.gdc_realn.bam 39608861 BAM chimeric harmonized CPTAC3 92ea99b0-ed36-4dad-8875-d89e0f79459d 525859f5dd11a1dd6a9b240d8ddc82bc {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor"} -C3L-02954.RNA-Seq.genomic.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.genomic.gdc_realn.bam 10306113151 BAM genomic harmonized CPTAC3 48bb7228-af9f-47cc-921c-907dac5a18f1 fd34c48e97c3f762232a01e992425cd4 {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.RNA-Seq.genomic.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.genomic.gdc_realn.bam 13438265989 BAM genomic harmonized CPTAC3 93504739-e876-4ea4-8a71-e541947ebd37 30f766ba45943e3e6a2c1af95b8ed3f9 {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor"} -C3L-02954.RNA-Seq.S12_L003_R1.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R1_001.fastq.gz 4458540622 FASTQ S12_L003_R1 unaligned CPTAC3 5fe3fe64-6744-4729-b179-5337065a5260 2fce56ef1306e61e4f9d5067d936bf21 {"aliquot_tag": "ALQ_f73b1105", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02954.RNA-Seq.S12_L003_R2.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R2_001.fastq.gz 5116470503 FASTQ S12_L003_R2 unaligned CPTAC3 f37eca52-6cde-4686-8899-4dc0dc52b4c1 dbd01c6827d00cd93f8f0885a650d168 {"aliquot_tag": "ALQ_f73b1105", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02954.RNA-Seq.S18_L006_R1.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R1_001.fastq.gz 3805429222 FASTQ S18_L006_R1 unaligned CPTAC3 9d871e37-e6a9-4848-9e82-56aae6c8b4a3 39bd9a90bb28a8c167c4124e620bb1e3 {"aliquot_tag": "ALQ_3177a0d1", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.RNA-Seq.S18_L006_R2.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R2_001.fastq.gz 4082573186 FASTQ S18_L006_R2 unaligned CPTAC3 d1038cb1-8e4d-49c6-b41b-bbf57d007d37 abdc7979b5959f896aa896d5c2195fce {"aliquot_tag": "ALQ_3177a0d1", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.RNA-Seq.transcriptome.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.transcriptome.gdc_realn.bam 7942097334 BAM transcriptome harmonized CPTAC3 5c0b486c-61d3-4b14-949b-64df41ace625 cc4f932a7b77dbca67bf5c40c24b0b7a {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.RNA-Seq.transcriptome.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.transcriptome.gdc_realn.bam 10914388924 BAM transcriptome harmonized CPTAC3 47735cb0-f98e-43ed-bf71-a3a92830f3fc 013e8089f443644c89fb2fe48b24db0f {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor"} -C3L-02954.WGS.N C3L-02954 LUAD WGS blood_normal CPT0162580002 CPT0162580002.WholeGenome.RP-1303.bam 81211486224 BAM aligned CPTAC3 47d2d3b9-db3d-4b92-9a5d-c60491c15f4c f11b4d9e6f4afa6ce3c60923f0725ffd {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02954.WGS.N.hg38 C3L-02954 LUAD WGS blood_normal CPT0162580002 5241b5b0-f264-4a87-804c-b0bff2e35445_wgs_gdc_realn.bam 116359383690 BAM harmonized CPTAC3 a2662d55-b8c2-4a39-85e7-c37d2281cd29 ed937dba083a3bcde7f510595f661d8d {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02954.WGS.T C3L-02954 LUAD WGS tumor CPT0161890006 CPT0161890006.WholeGenome.RP-1303.bam 55456771882 BAM aligned CPTAC3 45212ad3-047b-4953-a9eb-3e0ad3d5f5c2 7576ef15180a59d341558ea601dd4fff {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor"} -C3L-02954.WGS.T.hg38 C3L-02954 LUAD WGS tumor CPT0161890006 a8640d62-cf9b-42cf-a694-6f477564989a_wgs_gdc_realn.bam 79210203409 BAM harmonized CPTAC3 4587695c-f58f-4ca4-a65d-9dc7b91187a7 94e798e51862853a657e00a9d9677289 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor"} -C3L-02954.WXS.A C3L-02954 LUAD WXS tissue_normal CPT0161900006 CPT0161900006.WholeExome.RP-1303.bam 18804577245 BAM aligned CPTAC3 5820224e-1112-4a43-8393-e3a14bf5570b 6acf45ee4200fa2f90346904d5b1ecea {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.WXS.A.hg38 C3L-02954 LUAD WXS tissue_normal CPT0161900006 fbb644a8-7925-4144-b909-58b0f722fd3c_wxs_gdc_realn.bam 26091084151 BAM harmonized CPTAC3 c61e9373-e920-4563-a443-600478c848be 91b6db257bee95d206e4816a73ec9eb6 {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02954.WXS.N C3L-02954 LUAD WXS blood_normal CPT0162580002 CPT0162580002.WholeExome.RP-1303.bam 27266698503 BAM aligned CPTAC3 5342858b-87dd-41fe-afcd-0e1bc80aa3e7 a16af38485b83b38cb9f7cbce7898b4b {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02954.WXS.N.hg38 C3L-02954 LUAD WXS blood_normal CPT0162580002 5241b5b0-f264-4a87-804c-b0bff2e35445_wxs_gdc_realn.bam 37869136081 BAM harmonized CPTAC3 afc79d7a-98b1-44c9-8e16-4c80c19bc429 2433f5ca5868382c15e6246c806d0d88 {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal"} -C3L-02954.WXS.T C3L-02954 LUAD WXS tumor CPT0161890006 CPT0161890006.WholeExome.RP-1303.bam 23187496598 BAM aligned CPTAC3 4b6f48c0-dc4e-4757-86f4-93b2b78cc73b a943e7e04e220dd247edb0ff4ebc2497 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor"} -C3L-02954.WXS.T.hg38 C3L-02954 LUAD WXS tumor CPT0161890006 a8640d62-cf9b-42cf-a694-6f477564989a_wxs_gdc_realn.bam 31936184421 BAM harmonized CPTAC3 c209291e-e439-4bef-9be0-0a95c0d7b90e dcee5cb435778e1818fc57bed751726f {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor"} -C3L-02955.MethArray.Green.T C3L-02955 GBM Methylation_Array tumor CPT0196850009 203219670150_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 41d3c09c-ae28-4b82-981d-1a9fc2d408a5 4046c17e502e2e0666b3e8fd4ad02b32 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor"} -C3L-02955.MethArray.Red.T C3L-02955 GBM Methylation_Array tumor CPT0196850009 203219670150_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6f796820-0884-4071-9165-e28fcef9582a b1b9416f739c02103345aac3fb5cc8d5 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor"} -C3L-02955.miRNA-Seq.S19_L003_R1.T C3L-02955 GBM miRNA-Seq tumor CPT0196850006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGAAA_S19_L003_R1_001.unaln.bam 296456423 BAM S19_L003_R1 unaligned CPTAC3 3fec007c-6da8-458a-a16c-edb26d20c720 cc11b36538633ca093bec10e98a578ed {"aliquot_tag": "ALQ_bef3cdb7", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02955.miRNA-Seq.T.hg38 C3L-02955 GBM miRNA-Seq tumor CPT0196850006 906a2caf-32cc-44a6-a2e2-2a8b24feb405_mirnaseq_gdc_realn.bam 326699299 BAM harmonized CPTAC3 8d91c5c6-1875-43bb-a468-6d9ae8e055a8 b9e9f375adcd61196ba5e913066d7ae0 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor"} -C3L-02955.RNA-Seq.chimeric.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.chimeric.gdc_realn.bam 209106858 BAM chimeric harmonized CPTAC3 cc534cae-0de2-481e-a5c4-06136d7c98c4 6eb04864072d1df68a90a4ea341ac797 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor"} -C3L-02955.RNA-Seq.genomic.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.genomic.gdc_realn.bam 9183283400 BAM genomic harmonized CPTAC3 9203c07c-df98-47dd-b976-7baa5d94ce9a c12361d9cb12095be16eaaa807714f20 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor"} -C3L-02955.RNA-Seq.S27_L006_R1.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R1_001.fastq.gz 4173598325 FASTQ S27_L006_R1 unaligned CPTAC3 e7789396-db2e-4d22-834a-b310021a57ee 8fa2f50e55412694c64f02bf4bcf7871 {"aliquot_tag": "ALQ_bef3cdb7", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02955.RNA-Seq.S27_L006_R2.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R2_001.fastq.gz 4407032916 FASTQ S27_L006_R2 unaligned CPTAC3 fe6a58b1-0a07-44f2-b4c1-606ea06a5158 7f8211a460934bd29b202d4662f38428 {"aliquot_tag": "ALQ_bef3cdb7", "sample": "S27", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02955.RNA-Seq.transcriptome.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.transcriptome.gdc_realn.bam 12671365646 BAM transcriptome harmonized CPTAC3 9190c816-998b-4631-a114-b5d5b914425f aa5489abb0dcd507bbf87b7cb55207c0 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor"} -C3L-02955.WGS.N C3L-02955 GBM WGS blood_normal CPT0197750002 CPT0197750002.WholeGenome.RP-1303.bam 76394448497 BAM aligned CPTAC3 16388570-a5b3-4e44-a7e8-02c20921bc71 0574faebfa78bc0039161db9c4682122 {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02955.WGS.N.hg38 C3L-02955 GBM WGS blood_normal CPT0197750002 abef83c1-3c22-4357-9f48-a52ead2d1c6a_wgs_gdc_realn.bam 109886067285 BAM harmonized CPTAC3 f4926ea1-e97c-4cdd-a27f-720fdb5e33f2 0707ff2ceaab67b80f59cddc4cbf9f7f {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02955.WGS.T C3L-02955 GBM WGS tumor CPT0196850009 CPT0196850009.WholeGenome.RP-1303.bam 55020546674 BAM aligned CPTAC3 a2ff5ad9-b91d-46d0-8e54-9519f4668fd1 61d050934f61515048dd235964292ab9 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor"} -C3L-02955.WGS.T.hg38 C3L-02955 GBM WGS tumor CPT0196850009 7258c996-c299-4b53-93bf-85df20425431_wgs_gdc_realn.bam 80028595525 BAM harmonized CPTAC3 6269ec0f-cd4d-49a9-8819-2ce342e3ea13 dd4270efe5bdb555825d73f958f5af87 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor"} -C3L-02955.WXS.N C3L-02955 GBM WXS blood_normal CPT0197750002 CPT0197750002.WholeExome.RP-1303.bam 44694030957 BAM aligned CPTAC3 7c32f2b0-f25b-47b3-bd21-19c0bcd6b297 c4bf48fa0e779334184e99b1d401a753 {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02955.WXS.N.hg38 C3L-02955 GBM WXS blood_normal CPT0197750002 abef83c1-3c22-4357-9f48-a52ead2d1c6a_wxs_gdc_realn.bam 61179455806 BAM harmonized CPTAC3 535274f1-2bca-41a0-923b-ec0e1b8c5440 0e17c86ee2da66d5ff616948e525f15e {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal"} -C3L-02955.WXS.T C3L-02955 GBM WXS tumor CPT0196850009 CPT0196850009.WholeExome.RP-1303.bam 23009684162 BAM aligned CPTAC3 478ed93d-e81d-4ee1-af82-d3fa85ce933a 2f2ce4427f8b135b8de6d6efdbdd02a1 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor"} -C3L-02955.WXS.T.hg38 C3L-02955 GBM WXS tumor CPT0196850009 7258c996-c299-4b53-93bf-85df20425431_wxs_gdc_realn.bam 31696351927 BAM harmonized CPTAC3 278a2b87-c006-4b75-bca9-5cf3954c8412 023501b519ed3cfa26924882cb7b9141 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor"} -C3L-02956.ANN_cb0676eb.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.chimeric.gdc_realn.bam 150804172 BAM chimeric harmonized CPTAC3 5c06b1de-050e-4945-89c3-b700307e164d 5127d103b748b92cc7dd4e8574f9a8af {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.ANN_cb0676eb.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.genomic.gdc_realn.bam 8101255691 BAM genomic harmonized CPTAC3 af50384e-151d-485c-b421-077b3a5039c9 a51988e565012f5dfa6c3b6fa095f7c5 {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.ANN_cb0676eb.RNA-Seq.S15_L008_R1.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R1_001.fastq.gz 3329611166 FASTQ S15_L008_R1 unaligned CPTAC3 0a392860-e58e-418e-b55f-a3bf63e70609 5426bfc2763d7522dd934490dfd82823 {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02956.ANN_cb0676eb.RNA-Seq.S15_L008_R2.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R2_001.fastq.gz 3833389566 FASTQ S15_L008_R2 unaligned CPTAC3 93b3cf8a-9ac7-4c5c-9283-76376d0a9259 2d4b46e2127e177681c5029e17dd3f3a {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S15", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02956.ANN_cb0676eb.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.transcriptome.gdc_realn.bam 9864168981 BAM transcriptome harmonized CPTAC3 64d29bd4-2931-4397-b2b7-e1d8c0dd3625 4024af8d559209fd194176dfe74a2eee {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_134b84f1.RNA-Seq.chimeric.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.chimeric.gdc_realn.bam 200387488 BAM chimeric harmonized CPTAC3 44e1ce0f-b8ad-4e7f-8962-4ec6fead9523 a75ceaa8fb0e8baa1f3f4d79efaa1154 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02956.DUP_134b84f1.RNA-Seq.genomic.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.genomic.gdc_realn.bam 6887975463 BAM genomic harmonized CPTAC3 66333741-1c95-46ff-931d-afa5befc4f8b 03ea5a1191b0203d714627382ef7adc4 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02956.DUP_134b84f1.RNA-Seq.S24_L007_R1.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R1_001.fastq.gz 3365077576 FASTQ S24_L007_R1 unaligned CPTAC3 3fa608a8-5123-4c13-83a6-ac19c44a8c6f 769d81a951485be8eb746d9864619ae3 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02956.DUP_134b84f1.RNA-Seq.S24_L007_R2.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R2_001.fastq.gz 3635602400 FASTQ S24_L007_R2 unaligned CPTAC3 c86cb301-a574-4554-9d33-69d7c8881784 ef3ec6cf399edc399d9f6ed586ecc4e4 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02956.DUP_134b84f1.RNA-Seq.transcriptome.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.transcriptome.gdc_realn.bam 9828872244 BAM transcriptome harmonized CPTAC3 e9fc2a6c-49fc-4663-8b30-348d615a385f c2b972945f03a2f4888ecae61c55e470 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02956.DUP_3b7ee29f.WXS.T C3L-02956 PDA WXS tumor CPT0161630032 CPT0161630032.WholeExome.RP-1303.bam 42042783523 BAM aligned CPTAC3 0895bfe7-17d5-43ca-b97d-0eb72d1b3ae8 1b0f5bfac8efbb5292f136a00a9516ac {"aliquot_tag": "DUP_3b7ee29f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_3b7ee29f.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630032 1eb0b36a-3410-4404-8b94-318edd048b36_wxs_gdc_realn.bam 58254334863 BAM harmonized CPTAC3 7cf60c79-091f-4c2e-8251-55c4b1879eac 48ba17237899d3e103cc25fed59d0c20 {"aliquot_tag": "DUP_3b7ee29f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_4b141610.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.chimeric.gdc_realn.bam 73142843 BAM chimeric harmonized CPTAC3 4ead405a-e683-4286-b22d-1699c2638e12 5460d7d51354a19070ae056513f82bb8 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_4b141610.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.genomic.gdc_realn.bam 8526987797 BAM genomic harmonized CPTAC3 7150c058-4804-4c2d-8e7e-b5b7dedccd1f 301f6d6ecf09c65680afb88181147d37 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_4b141610.RNA-Seq.S17_L006_R1.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R1_001.fastq.gz 3942741206 FASTQ S17_L006_R1 unaligned CPTAC3 362ffe9e-e45c-46c4-a6a9-f2e069be19aa b0cfbaf4dbd9e571bbeecf954f80f8f8 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_4b141610.RNA-Seq.S17_L006_R2.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R2_001.fastq.gz 4239935508 FASTQ S17_L006_R2 unaligned CPTAC3 38b6b377-8ca1-40a5-a38f-ecd1cbfa3b7b f5f85d146463b5ae7e0fc70b32b2d379 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_4b141610.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.transcriptome.gdc_realn.bam 11180541083 BAM transcriptome harmonized CPTAC3 f7828f74-a428-4206-8b04-8fc2ff5b92a3 2443162d009147a7dcdeb58fa01695b1 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_a277b325.WXS.T C3L-02956 PDA WXS tumor CPT0161630031 CPT0161630031.WholeExome.RP-1303.bam 22578971236 BAM aligned CPTAC3 b61079a1-a06a-4ff7-8114-38397c5b45a3 128bff2e86a679b52e977ecf89666724 {"aliquot_tag": "DUP_a277b325", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_a277b325.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630031 f51e4a35-fb0f-4187-8241-7474a2c40fff_wxs_gdc_realn.bam 32325792008 BAM harmonized CPTAC3 65f545f3-877a-45a1-b6d3-a8b078bbe840 faa70056c787dd7b61d41c931b3d9639 {"aliquot_tag": "DUP_a277b325", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_a72fd96f.WXS.N C3L-02956 PDA WXS blood_normal CPT0162530002 CPT0162530002.WholeExome.RP-1303.bam 21966428151 BAM aligned CPTAC3 d49afefc-4eb7-4bb9-91c8-6d8290df0118 6007431568a954f6b5e1e141ae953b0e {"aliquot_tag": "DUP_a72fd96f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-02956.DUP_a72fd96f.WXS.N.hg38 C3L-02956 PDA WXS blood_normal CPT0162530002 fad86bd3-188e-4577-b299-82ca3a159953_wxs_gdc_realn.bam 30810046647 BAM harmonized CPTAC3 39004d60-c9c3-493e-87dc-2e47cfc424a2 22c08bf48aad32c515b9994ca8e3e15e {"aliquot_tag": "DUP_a72fd96f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-02956.DUP_d57083b3.WXS.T C3L-02956 PDA WXS tumor CPT0161630030 CPT0161630030.WholeExome.RP-1303.bam 31707107605 BAM aligned CPTAC3 8ac73d0d-9a31-4755-a923-e99b44052790 591114edfe34a4aa816b1e0f4130bfe7 {"aliquot_tag": "DUP_d57083b3", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02956.DUP_d57083b3.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630030 bc3ba23b-93a7-4643-aa3c-bce399772e8a_wxs_gdc_realn.bam 43624526879 BAM harmonized CPTAC3 97d8916e-0670-4d6a-b36b-c53b6879b81c f8a20ed359a0cdc7f894f7d028661721 {"aliquot_tag": "DUP_d57083b3", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-02957.MethArray.Green.A C3L-02957 LUAD Methylation_Array tissue_normal CPT0196900006 203219640133_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 76f06ee5-750f-4105-855e-2dd5ccfe593f 9e920eb73f34265257d851fb99ad4b08 {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.MethArray.Green.T C3L-02957 LUAD Methylation_Array tumor CPT0196880006 203220070154_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 85725044-8fa9-401b-9e87-e925d0cea228 d7f7c9def2449e907e2381107b1d26c1 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor"} -C3L-02957.MethArray.Red.A C3L-02957 LUAD Methylation_Array tissue_normal CPT0196900006 203219640133_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5ee49171-905e-4550-bac5-6ac3d2643fbb 06d7f19fff8f6a8c5a1746d1eb4fc435 {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.MethArray.Red.T C3L-02957 LUAD Methylation_Array tumor CPT0196880006 203220070154_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 c53de95a-b89e-4d1a-b250-76a2d0c8f8a0 b0bbdc338600abf7ed3a7ff9d044a19d {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor"} -C3L-02957.miRNA-Seq.A.hg38 C3L-02957 LUAD miRNA-Seq tissue_normal CPT0196900009 057e8fb6-cdb0-45b6-9e69-e24e006bc0f3_mirnaseq_gdc_realn.bam 287319874 BAM harmonized CPTAC3 fffcfb42-fda8-4f11-be8c-5d92167cc748 ad89a3076dae3c661f84a383603be5a3 {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.miRNA-Seq.S15_L006_R1.A C3L-02957 LUAD miRNA-Seq tissue_normal CPT0196900009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L006_R1_001.unaln.bam 262615480 BAM S15_L006_R1 unaligned CPTAC3 dd4a1ae2-c941-42df-aad8-9c84e518d41d db7cb64307043d27b69a5621282fe0d4 {"aliquot_tag": "ALQ_2df08cf3", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.miRNA-Seq.S27_L006_R1.T C3L-02957 LUAD miRNA-Seq tumor CPT0196880009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L006_R1_001.unaln.bam 201491760 BAM S27_L006_R1 unaligned CPTAC3 4beefb9d-7cc5-4d19-a1d7-82b2b5fbd57a 188ac89e4bb0463eb000d940981ba8f8 {"aliquot_tag": "ALQ_d6dc1497", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02957.miRNA-Seq.T.hg38 C3L-02957 LUAD miRNA-Seq tumor CPT0196880009 a190ce63-a916-4074-ab9a-f3958230adee_mirnaseq_gdc_realn.bam 220111194 BAM harmonized CPTAC3 cc694ba2-8493-411b-a7b7-5da8147f3f47 e53ffff7a5feccaaa09617bf5fa2c8df {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor"} -C3L-02957.RNA-Seq.chimeric.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.chimeric.gdc_realn.bam 45264247 BAM chimeric harmonized CPTAC3 9129b3bc-d958-4b53-85d0-a84112641581 376efc7cb78112f3394a37e51bb0a744 {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.RNA-Seq.chimeric.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.chimeric.gdc_realn.bam 56881130 BAM chimeric harmonized CPTAC3 620a41bf-3d83-47e9-a75c-662bf51e6c22 281fc842f073d36292f2a74f69e7b42d {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor"} -C3L-02957.RNA-Seq.genomic.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.genomic.gdc_realn.bam 9646998771 BAM genomic harmonized CPTAC3 3f45ac34-ea34-4e48-9874-cb1609aff7fa afc90b2337d790861d61c682a66406cf {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.RNA-Seq.genomic.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.genomic.gdc_realn.bam 9120502222 BAM genomic harmonized CPTAC3 dbf95a4e-7577-4107-be46-cb0c60b5160d 00d9c84e21533f93aed821aae103abda {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor"} -C3L-02957.RNA-Seq.S21_L006_R1.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3771405574 FASTQ S21_L006_R1 unaligned CPTAC3 fe2a1780-a97f-4730-921f-0d4806d7ad9a d64787b8b43f11b9a3eec42a1d694960 {"aliquot_tag": "ALQ_2df08cf3", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.RNA-Seq.S21_L006_R2.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4215288236 FASTQ S21_L006_R2 unaligned CPTAC3 4fa0153d-ac70-4270-a6e8-ba699b98466c 8bb3062fb45a8c62f257a89b097ed93f {"aliquot_tag": "ALQ_2df08cf3", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.RNA-Seq.S4_L007_R1.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 4019741573 FASTQ S4_L007_R1 unaligned CPTAC3 1d5b23ea-0d9c-4115-b397-755c7d3f3862 0ac7e139890ae6530176a5e7eecc12b2 {"aliquot_tag": "ALQ_d6dc1497", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02957.RNA-Seq.S4_L007_R2.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4479830400 FASTQ S4_L007_R2 unaligned CPTAC3 112252ec-ef61-4004-8261-6cc86db28f69 200be89c6662a11c04e4107c6c4f1998 {"aliquot_tag": "ALQ_d6dc1497", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02957.RNA-Seq.transcriptome.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.transcriptome.gdc_realn.bam 8979150395 BAM transcriptome harmonized CPTAC3 c4cea052-6c04-45eb-8d50-d678a1dbf2e9 1ae6c4f4c1f5e700d8ecdc9e2af7a92f {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.RNA-Seq.transcriptome.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.transcriptome.gdc_realn.bam 9572549152 BAM transcriptome harmonized CPTAC3 a0e142f5-e9de-4800-a9a1-915647835c02 34623a31c06e8e699972774fef364dd0 {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor"} -C3L-02957.WGS.A C3L-02957 LUAD WGS tissue_normal CPT0196900006 CPT0196900006.WholeGenome.RP-1303.bam 62173726655 BAM aligned CPTAC3 fdcd3ba4-ed0f-40f7-b9b4-c3e599fd86f9 c31fd5d570c78cfba893a5087708166d {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.WGS.A.hg38 C3L-02957 LUAD WGS tissue_normal CPT0196900006 7d996912-100d-4a38-9fcd-17a8c82f7c4c_wgs_gdc_realn.bam 91448878304 BAM harmonized CPTAC3 2255e3d0-8329-4c46-a133-ab49c6d8ddbd d78dcda3b64a5ed94f7a3a45b14aa20e {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.WGS.N C3L-02957 LUAD WGS blood_normal CPT0197790002 CPT0197790002.WholeGenome.RP-1303.bam 59017340714 BAM aligned CPTAC3 bdb342f0-b433-4dab-9277-62f1fac6a59a 8486f036067ab0f84ee4f408c1728935 {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02957.WGS.N.hg38 C3L-02957 LUAD WGS blood_normal CPT0197790002 68970709-7c5f-4fc2-a872-bd91f729fcfa_wgs_gdc_realn.bam 86828294681 BAM harmonized CPTAC3 bf40f37f-e60c-43d9-9781-9e0146665ace ea9d0ed5e7a97e7444cd2bb337ed5ced {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02957.WGS.T C3L-02957 LUAD WGS tumor CPT0196880006 CPT0196880006.WholeGenome.RP-1303.bam 54985988528 BAM aligned CPTAC3 15cf1841-9e12-4067-9991-0262821554a6 b1d838c75eeee957ac604f0011533590 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor"} -C3L-02957.WGS.T.hg38 C3L-02957 LUAD WGS tumor CPT0196880006 e34ca463-6ca4-4f3f-84da-11c98803934e_wgs_gdc_realn.bam 81407353203 BAM harmonized CPTAC3 b3388314-163f-4d9b-9e97-f2305bfa715e 1219b4aa1c8c85fff61e91e82e46ee91 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor"} -C3L-02957.WXS.A C3L-02957 LUAD WXS tissue_normal CPT0196900006 CPT0196900006.WholeExome.RP-1303.bam 17867578477 BAM aligned CPTAC3 bd859efa-47bc-498a-b699-d66eaf8b19b9 5ff71738064569c2b2ac8ce92ce5f097 {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.WXS.A.hg38 C3L-02957 LUAD WXS tissue_normal CPT0196900006 7d996912-100d-4a38-9fcd-17a8c82f7c4c_wxs_gdc_realn.bam 25116390526 BAM harmonized CPTAC3 d5fe0100-1aee-493f-ae40-73efc6a16d24 9c604689a1a7c913871fef9efea5dc0a {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02957.WXS.N C3L-02957 LUAD WXS blood_normal CPT0197790002 CPT0197790002.WholeExome.RP-1303.bam 29663710549 BAM aligned CPTAC3 a83f0898-7d70-445b-95f8-288e078a6737 5f36dd42af8467a71b8b8a7e8571841b {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02957.WXS.N.hg38 C3L-02957 LUAD WXS blood_normal CPT0197790002 68970709-7c5f-4fc2-a872-bd91f729fcfa_wxs_gdc_realn.bam 40841975264 BAM harmonized CPTAC3 89ea2f30-a1be-4736-8861-f1b57e5ce52f 4e13610f7097bd895a4809914abf67bd {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal"} -C3L-02957.WXS.T C3L-02957 LUAD WXS tumor CPT0196880006 CPT0196880006.WholeExome.RP-1303.bam 26272557890 BAM aligned CPTAC3 8db19902-1f67-41e1-9e74-0052293e8d92 d2bcb5bacb20169c12bacc8e35f9f5b0 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor"} -C3L-02957.WXS.T.hg38 C3L-02957 LUAD WXS tumor CPT0196880006 e34ca463-6ca4-4f3f-84da-11c98803934e_wxs_gdc_realn.bam 36004433035 BAM harmonized CPTAC3 db03cda6-e834-4710-a690-6a503a2d6d5f e60beb421f342cf8893812f733ae4dba {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor"} -C3L-02958.MethArray.Green.A C3L-02958 LUAD Methylation_Array tissue_normal CPT0197000006 203561620080_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d1e5a185-bffa-4367-9efd-18d6a0b1e1eb e7eae392c151b9e7da1e32b08bcd9777 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.MethArray.Green.T C3L-02958 LUAD Methylation_Array tumor CPT0196990006 203561620159_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f1a71d35-2a7b-4b42-87a7-ff2fc8e0490b 5f1772b7923461d5fab6b5709f2e0852 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor"} -C3L-02958.MethArray.Red.A C3L-02958 LUAD Methylation_Array tissue_normal CPT0197000006 203561620080_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 5733c7f4-0cac-4137-b24a-bdd451c1519f 3183bd2f981296b0fa8075107357c793 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.MethArray.Red.T C3L-02958 LUAD Methylation_Array tumor CPT0196990006 203561620159_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 66bffcb7-f7b7-49f1-b0bd-3c9e1cc8eeaf 6debf2bab33e996b1e57f2ac64b6e990 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor"} -C3L-02958.miRNA-Seq.A.hg38 C3L-02958 LUAD miRNA-Seq tissue_normal CPT0197000009 35722292-ad59-44d3-8634-4c03290412cc_mirnaseq_gdc_realn.bam 333231337 BAM harmonized CPTAC3 f6d74e92-ec0b-4552-b5c0-2bd2ca5b104e cbfded851654a7d4631139cb88218cdb {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.miRNA-Seq.S25_L007_R1.A C3L-02958 LUAD miRNA-Seq tissue_normal CPT0197000009 190712_UNC32-K00270_0192_BH7HL3BBXY_CGATGT_S25_L007_R1_001.unaln.bam 287557113 BAM S25_L007_R1 unaligned CPTAC3 812df7d9-6c08-428c-9ce0-c4450329df51 fcc8244e45594c44d4cf83238799669c {"aliquot_tag": "ALQ_ac88d68f", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.miRNA-Seq.S9_L005_R1.T C3L-02958 LUAD miRNA-Seq tumor CPT0196990009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTCAA_S9_L005_R1_001.unaln.bam 206466491 BAM S9_L005_R1 unaligned CPTAC3 f7c7fddd-b8ae-47e5-affd-9d23cbca044e 4e8e8c6248f686a566e3bed8c4931143 {"aliquot_tag": "ALQ_20e0ee82", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02958.miRNA-Seq.T.hg38 C3L-02958 LUAD miRNA-Seq tumor CPT0196990009 557b980d-96f6-47a5-8d62-c3e4d6ceea10_mirnaseq_gdc_realn.bam 229292545 BAM harmonized CPTAC3 19f39a59-850c-46be-be3d-6260a3e5d711 68628e3cceabf91dd6514665133ad680 {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor"} -C3L-02958.RNA-Seq.chimeric.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.chimeric.gdc_realn.bam 60335680 BAM chimeric harmonized CPTAC3 1546351c-dc55-4b19-a6be-803c0d7762b1 dd5762cbc626455347a8e044b05b8c71 {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.RNA-Seq.chimeric.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.chimeric.gdc_realn.bam 29747687 BAM chimeric harmonized CPTAC3 6e426495-d0f1-458d-a759-57d0594e4d5b f1c1a56de02ff3bbb43838c784e7eb79 {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor"} -C3L-02958.RNA-Seq.genomic.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.genomic.gdc_realn.bam 13033245522 BAM genomic harmonized CPTAC3 367ca0c0-4cac-4634-8f5a-8d2a2d0a35b2 80016eacee3a7b0e6557dedd8dba3111 {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.RNA-Seq.genomic.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.genomic.gdc_realn.bam 11518742467 BAM genomic harmonized CPTAC3 24b4c32e-75a7-4bef-808d-074e75e8c167 e27f45ec94853d0a4a9b0511589c46c7 {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor"} -C3L-02958.RNA-Seq.S31_L008_R1.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R1_001.fastq.gz 5183993274 FASTQ S31_L008_R1 unaligned CPTAC3 1b53936d-29f5-4f74-b341-97960b35d4c2 2e1992e0b06f3eacb78d7049c224858b {"aliquot_tag": "ALQ_ac88d68f", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.RNA-Seq.S31_L008_R2.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R2_001.fastq.gz 5205588589 FASTQ S31_L008_R2 unaligned CPTAC3 37efe146-d208-43ae-95eb-adeef2391160 2eda6ce210102f74ea63e5d6920ad3cf {"aliquot_tag": "ALQ_ac88d68f", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.RNA-Seq.S9_L003_R1.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R1_001.fastq.gz 3864631869 FASTQ S9_L003_R1 unaligned CPTAC3 14b1c2dd-6162-42d0-bb84-df26086f43e8 a7a70d10b6e92749a70edac0cfc0c28a {"aliquot_tag": "ALQ_20e0ee82", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02958.RNA-Seq.S9_L003_R2.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R2_001.fastq.gz 4313872569 FASTQ S9_L003_R2 unaligned CPTAC3 e5dd7b54-f117-4957-a753-3fb5f3b21056 7ee9d4b57d46a27de1d23dd818437671 {"aliquot_tag": "ALQ_20e0ee82", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02958.RNA-Seq.transcriptome.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.transcriptome.gdc_realn.bam 11052934272 BAM transcriptome harmonized CPTAC3 ed997528-62a5-4af2-8a97-f5476c098500 bd52d8d89188ca67162fa5d87d1b43cf {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.RNA-Seq.transcriptome.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.transcriptome.gdc_realn.bam 8715387821 BAM transcriptome harmonized CPTAC3 0535bf97-433f-4f92-8d1b-b30a1c5ec844 cc36dac89bf3ad230ad9733cccac6d4e {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor"} -C3L-02958.WGS.N C3L-02958 LUAD WGS blood_normal CPT0197810002 CPT0197810002.WholeGenome.RP-1303.bam 67761141074 BAM aligned CPTAC3 f296b9c0-4297-4f8f-aa9a-1f2339570abb ad4f96bcfaab7148d6fa3c81efb6ecc7 {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal"} -C3L-02958.WGS.N.hg38 C3L-02958 LUAD WGS blood_normal CPT0197810002 cd9a2260-db53-4671-b48d-94520a44c979_wgs_gdc_realn.bam 98028187161 BAM harmonized CPTAC3 55241e08-8bbf-4c5f-9078-0f3a422e567d 2bf6b980906e9aab56c0a472396d6dc8 {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal"} -C3L-02958.WGS.T C3L-02958 LUAD WGS tumor CPT0196990006 CPT0196990006.WholeGenome.RP-1303.bam 76509174772 BAM aligned CPTAC3 5a92e75c-4a74-4ca5-a4bb-c6f935a4291e f5b51e519abed42817d2973c7248ec43 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor"} -C3L-02958.WGS.T.hg38 C3L-02958 LUAD WGS tumor CPT0196990006 42d4673a-9890-4752-8cb4-fb60d04e0626_wgs_gdc_realn.bam 112987968042 BAM harmonized CPTAC3 66d67499-c526-42b2-840f-113fb36718f8 af4e905edcd0ca83a2ff4efcaafeb538 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor"} -C3L-02958.WXS.A C3L-02958 LUAD WXS tissue_normal CPT0197000006 CPT0197000006.WholeExome.RP-1303.bam 22727137753 BAM aligned CPTAC3 3598565a-edd2-429b-a9c0-c37b9603ae5e c24faa8e8fd15c7b6e2ff04eb7932651 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.WXS.A.hg38 C3L-02958 LUAD WXS tissue_normal CPT0197000006 9d105fc0-772b-433b-aff5-a7fd4611b0da_wxs_gdc_realn.bam 31570808144 BAM harmonized CPTAC3 891c0b3e-f6ed-4db2-ade0-7f400addbb45 a375d530a0bf756555e2c0b8e40a34f0 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02958.WXS.N C3L-02958 LUAD WXS blood_normal CPT0197810002 CPT0197810002.WholeExome.RP-1303.bam 21872269526 BAM aligned CPTAC3 bdf1c1cf-18a5-4685-9ab5-21c1fc4e4913 10d54786e486c0201cbe2e683e04819d {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal"} -C3L-02958.WXS.N.hg38 C3L-02958 LUAD WXS blood_normal CPT0197810002 cd9a2260-db53-4671-b48d-94520a44c979_wxs_gdc_realn.bam 30051134828 BAM harmonized CPTAC3 41dd256e-e639-42c7-b18f-fbcf3ddf0448 9184001c1ca0166ec5e72915b3f62c83 {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal"} -C3L-02958.WXS.T C3L-02958 LUAD WXS tumor CPT0196990006 CPT0196990006.WholeExome.RP-1303.bam 27695301344 BAM aligned CPTAC3 39f7937a-cce1-491b-a6bd-33b066867e8c fd029cdcacf68b16fcb989e8f597aa27 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor"} -C3L-02958.WXS.T.hg38 C3L-02958 LUAD WXS tumor CPT0196990006 42d4673a-9890-4752-8cb4-fb60d04e0626_wxs_gdc_realn.bam 38080652437 BAM harmonized CPTAC3 bfe2e19d-a75d-4151-bda6-0fb66acbcc03 b41826253fc2cda5d4555ae1149bb942 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor"} -C3L-02961.MethArray.Green.A C3L-02961 LUAD Methylation_Array tissue_normal CPT0196960006 203561620012_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 97f04715-d30d-46b1-a70b-81474c97197b 72803ad1208735181dd5d323fd3e4109 {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.MethArray.Green.T C3L-02961 LUAD Methylation_Array tumor CPT0196950006 203561450023_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8c2a5a0d-a423-46c2-8d46-3a15998b010b ec24146dc1c5d32ffa289e3a998c5a35 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor"} -C3L-02961.MethArray.Red.A C3L-02961 LUAD Methylation_Array tissue_normal CPT0196960006 203561620012_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 4f06ed4e-db65-4360-bdfb-fe8ceeeb41b3 5c30c386efa45acbf6bb596d37fb446d {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.MethArray.Red.T C3L-02961 LUAD Methylation_Array tumor CPT0196950006 203561450023_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 a313e725-b2a6-4da7-91a3-09964f8361e1 77ca3e5c406935ac4947ee0ca79ea0c6 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor"} -C3L-02961.miRNA-Seq.A.hg38 C3L-02961 LUAD miRNA-Seq tissue_normal CPT0196960009 655bd47b-81dc-4ce6-91dd-bdc64947b387_mirnaseq_gdc_realn.bam 223601377 BAM harmonized CPTAC3 3c89c82b-52a4-40d4-b23f-d17851f01600 096924ace8bdc1c0c56076216cc64246 {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.miRNA-Seq.S24_L007_R1.A C3L-02961 LUAD miRNA-Seq tissue_normal CPT0196960009 190712_UNC32-K00270_0192_BH7HL3BBXY_ATCACG_S24_L007_R1_001.unaln.bam 190878872 BAM S24_L007_R1 unaligned CPTAC3 6b42cac8-57bb-444e-ad28-002bad6e5a8f 00746fd238077dce93e70fe37c44808f {"aliquot_tag": "ALQ_a2b07953", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.miRNA-Seq.S8_L005_R1.T C3L-02961 LUAD miRNA-Seq tumor CPT0196950009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTTGTA_S8_L005_R1_001.unaln.bam 233398461 BAM S8_L005_R1 unaligned CPTAC3 d71c2b2a-bde4-41ba-9fd1-da1c42616650 9d375cf017bcad2843ca5643cb0cb804 {"aliquot_tag": "ALQ_e5100383", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02961.miRNA-Seq.T.hg38 C3L-02961 LUAD miRNA-Seq tumor CPT0196950009 fc4b3ef8-0c55-4aa3-9453-381d17e1e0b0_mirnaseq_gdc_realn.bam 260085247 BAM harmonized CPTAC3 52992437-3bcd-4bab-8337-25e6776a10b3 0c1e5de963ce4e534261353f9ea57a22 {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor"} -C3L-02961.RNA-Seq.chimeric.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.chimeric.gdc_realn.bam 54904097 BAM chimeric harmonized CPTAC3 7789a385-3c9a-4083-8d84-63b514dd28b1 ce2928cdc596e31d8d21f5ad5b0f4480 {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.RNA-Seq.chimeric.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.chimeric.gdc_realn.bam 25040421 BAM chimeric harmonized CPTAC3 5270cf41-a45b-482d-a4b2-93498e04c252 1f415d0d8ef091c43d1858eb2399292e {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor"} -C3L-02961.RNA-Seq.genomic.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.genomic.gdc_realn.bam 12410841530 BAM genomic harmonized CPTAC3 217cd573-f498-4222-a248-7f557e0d592c 64195f26b14eadace3d2e8af7669291b {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.RNA-Seq.genomic.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.genomic.gdc_realn.bam 12708844800 BAM genomic harmonized CPTAC3 314b763d-2ad1-4849-8d3b-1da3ea2ba17f 7ae8957e7db9283f3f4de974d0bc7445 {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor"} -C3L-02961.RNA-Seq.S16_L004_R1.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R1_001.fastq.gz 3808981603 FASTQ S16_L004_R1 unaligned CPTAC3 d448ca06-c2ad-4551-ab78-26cd39c8ef1a 623584f050e1b54f3c952db5ec3dec86 {"aliquot_tag": "ALQ_e5100383", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02961.RNA-Seq.S16_L004_R2.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R2_001.fastq.gz 4358810970 FASTQ S16_L004_R2 unaligned CPTAC3 154f290e-a3a4-4131-8625-d87ee785e196 b9a83ea3b930795b5a93fae2b13e1473 {"aliquot_tag": "ALQ_e5100383", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02961.RNA-Seq.S30_L008_R1.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4480977840 FASTQ S30_L008_R1 unaligned CPTAC3 75b7824a-d69a-4063-a390-8d370f4555db 1726956b5b1e9d8b4563755edf49793a {"aliquot_tag": "ALQ_a2b07953", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.RNA-Seq.S30_L008_R2.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4951711704 FASTQ S30_L008_R2 unaligned CPTAC3 63b49848-ecb2-4542-852c-fee42dc98479 4a929ee9b4696d4f77abca69dafbc5de {"aliquot_tag": "ALQ_a2b07953", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.RNA-Seq.transcriptome.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.transcriptome.gdc_realn.bam 9645896874 BAM transcriptome harmonized CPTAC3 91dd2cbb-b9cb-4531-9cce-4329cd6a9f13 31415a60afc546ec5dd3f8a637a041cf {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.RNA-Seq.transcriptome.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.transcriptome.gdc_realn.bam 8730294393 BAM transcriptome harmonized CPTAC3 c239c648-b164-4b92-8f76-5cb806da1821 9208c4745bbbf1c66406fb0456181071 {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor"} -C3L-02961.WGS.N C3L-02961 LUAD WGS blood_normal CPT0197800002 CPT0197800002.WholeGenome.RP-1303.bam 72036266318 BAM aligned CPTAC3 27b9be0b-3f1e-4ab9-9f4c-c4f41214abb2 68cff7329e09ecc0af23bced79bdd42a {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02961.WGS.N.hg38 C3L-02961 LUAD WGS blood_normal CPT0197800002 c1c3c1de-a5f4-431c-8fa8-bd974fe429d8_wgs_gdc_realn.bam 104998787194 BAM harmonized CPTAC3 da100a30-a64a-4279-8732-0f0bd5fe3a54 362fb24b17340fc7bf0c17358ef098ac {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02961.WGS.T C3L-02961 LUAD WGS tumor CPT0196950006 CPT0196950006.WholeGenome.RP-1303.bam 69867540035 BAM aligned CPTAC3 bf71d693-1a5b-44e9-ba27-fc4ecca96594 a5a8e590308bc3dd1d2ebddf3e44cc43 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor"} -C3L-02961.WGS.T.hg38 C3L-02961 LUAD WGS tumor CPT0196950006 a32ad1ee-0504-4bcf-93e1-6f4156fe9ed7_wgs_gdc_realn.bam 101775809061 BAM harmonized CPTAC3 d4855b3b-d2bf-44ed-a8da-936c827a9bd6 93c551de551bd2b3931f75a0d23d34eb {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor"} -C3L-02961.WXS.A C3L-02961 LUAD WXS tissue_normal CPT0196960006 CPT0196960006.WholeExome.RP-1303.bam 27907076300 BAM aligned CPTAC3 b40fbc45-c3e7-45e7-991d-7a6a8dde5b9f 6df7d40e93441bcfa8615ef28cad8ce2 {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.WXS.A.hg38 C3L-02961 LUAD WXS tissue_normal CPT0196960006 0c81e2f8-7f99-440b-adfe-562c0b2e39fa_wxs_gdc_realn.bam 38625341502 BAM harmonized CPTAC3 49c6b143-af4d-46a0-8e90-580fa4d388cb 31526cebd72a6528b453b66dc034f1be {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02961.WXS.N C3L-02961 LUAD WXS blood_normal CPT0197800002 CPT0197800002.WholeExome.RP-1303.bam 21129750720 BAM aligned CPTAC3 c89f6d35-04ff-4b4a-9f65-df8719a3f7d5 ee99bf3f739a562803b8f71305da383d {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02961.WXS.N.hg38 C3L-02961 LUAD WXS blood_normal CPT0197800002 c1c3c1de-a5f4-431c-8fa8-bd974fe429d8_wxs_gdc_realn.bam 29061613805 BAM harmonized CPTAC3 f23ca910-722d-4d32-888e-7c69f63737ad ce9b1ff450f2881102a0fa4826ad5853 {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal"} -C3L-02961.WXS.T C3L-02961 LUAD WXS tumor CPT0196950006 CPT0196950006.WholeExome.RP-1303.bam 22846837840 BAM aligned CPTAC3 b1563dcf-77fe-4c3b-99d9-4a217fdeef76 91d5236eb1fa9fa9c763be02e188d3f8 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor"} -C3L-02961.WXS.T.hg38 C3L-02961 LUAD WXS tumor CPT0196950006 a32ad1ee-0504-4bcf-93e1-6f4156fe9ed7_wxs_gdc_realn.bam 31770273638 BAM harmonized CPTAC3 9e41f283-126c-40ae-a797-14cc7d39bd95 e63de3dd47f5f53a0ca1bccec391bbd3 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor"} -C3L-02963.MethArray.Green.A C3L-02963 LSCC Methylation_Array tissue_normal CPT0197100009 203219640160_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8dfe43a0-7230-44de-be52-b62ca4eb8566 83a3e5b22fa1451827dc781a9b3d0f9d {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.MethArray.Green.T C3L-02963 LSCC Methylation_Array tumor CPT0197090009 203219650174_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 70f890b6-aff7-4f97-ae72-5e2152dfb8cd 7b41a141c65d44bc3b516c0025064f8e {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor"} -C3L-02963.MethArray.Red.A C3L-02963 LSCC Methylation_Array tissue_normal CPT0197100009 203219640160_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6fa549ff-b89f-4c86-a09d-4f9195dbd2f1 8cf88a9a16f5845c6b8b665ef1bb2b4b {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.MethArray.Red.T C3L-02963 LSCC Methylation_Array tumor CPT0197090009 203219650174_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 e6c94569-2d30-4d9b-a6f0-e6f2575650c6 8d7501214261c813d6a96f0cd8bb7559 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor"} -C3L-02963.miRNA-Seq.A.hg38 C3L-02963 LSCC miRNA-Seq tissue_normal CPT0197100006 31287709-20ac-4994-b767-5e4033245c67_mirnaseq_gdc_realn.bam 277436104 BAM harmonized CPTAC3 db622b29-b43b-413f-8310-a38469731d99 5007252bbb82b44c6ea116c4c3dd0651 {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.miRNA-Seq.S20_L003_R1.T C3L-02963 LSCC miRNA-Seq tumor CPT0197090006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGGCC_S20_L003_R1_001.unaln.bam 195156114 BAM S20_L003_R1 unaligned CPTAC3 1c49d075-fa9b-4e5d-a7c7-137c57366f7c 16abe6e1d8f83d023497c776bc54d4c2 {"aliquot_tag": "ALQ_3127a96f", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02963.miRNA-Seq.S47_L004_R1.A C3L-02963 LSCC miRNA-Seq tissue_normal CPT0197100006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGGCA_S47_L004_R1_001.unaln.bam 246280280 BAM S47_L004_R1 unaligned CPTAC3 83b1cfed-dfa8-4a7a-bc48-e48800dee329 d76e00ecd8f79991dbc29503a7ec4fd7 {"aliquot_tag": "ALQ_f76b18bb", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.miRNA-Seq.T.hg38 C3L-02963 LSCC miRNA-Seq tumor CPT0197090006 bd5a2c49-5563-413a-955d-cd4815f039f6_mirnaseq_gdc_realn.bam 211845559 BAM harmonized CPTAC3 82ff0ed5-490f-47ab-8346-e4d0133290c7 c5682623c835a472ded1563731f0795c {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor"} -C3L-02963.RNA-Seq.chimeric.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.chimeric.gdc_realn.bam 108021122 BAM chimeric harmonized CPTAC3 a66db302-c030-4c66-8c9f-5071f93008b9 718f9775b650d63e35becdbcdf3504fc {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.RNA-Seq.chimeric.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.chimeric.gdc_realn.bam 94339648 BAM chimeric harmonized CPTAC3 e84fffbc-adc6-4d86-aa73-c4cbcf38b686 a2c27232d0aa903d7ccd3bb522eec1ac {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor"} -C3L-02963.RNA-Seq.genomic.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.genomic.gdc_realn.bam 8198633178 BAM genomic harmonized CPTAC3 87a66698-57fd-4c87-a67b-df1638f37c89 3939783ee138ab5f1ca44f94baeb5883 {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.RNA-Seq.genomic.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.genomic.gdc_realn.bam 8010242159 BAM genomic harmonized CPTAC3 f2cc4b91-cc6d-4312-a987-f3cafd1477ef 0c27ec6bd33665033ce78e6523cd888c {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor"} -C3L-02963.RNA-Seq.S20_L005_R1.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3362326554 FASTQ S20_L005_R1 unaligned CPTAC3 9ed7af65-3342-43c4-be81-f609625b6153 679cbde74712996bd7c1d353ac3a0070 {"aliquot_tag": "ALQ_f76b18bb", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.RNA-Seq.S20_L005_R2.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 3588435842 FASTQ S20_L005_R2 unaligned CPTAC3 25e91e4f-a859-48cb-ab59-0a0886ca1850 85076ea04e9f7b1f15af0c2ddaef6097 {"aliquot_tag": "ALQ_f76b18bb", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.RNA-Seq.S30_L006_R1.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R1_001.fastq.gz 3421272162 FASTQ S30_L006_R1 unaligned CPTAC3 c34ead20-5eb9-48b5-aef8-ce1542b51292 e87986e430bae3be2589394259fbde26 {"aliquot_tag": "ALQ_3127a96f", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02963.RNA-Seq.S30_L006_R2.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R2_001.fastq.gz 3611986950 FASTQ S30_L006_R2 unaligned CPTAC3 07f8ab30-2bea-4757-ae30-54cc3cf7e852 b2c6f467f52d6297bdc4d77827eb0f66 {"aliquot_tag": "ALQ_3127a96f", "sample": "S30", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02963.RNA-Seq.transcriptome.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.transcriptome.gdc_realn.bam 8633239144 BAM transcriptome harmonized CPTAC3 d70ddddb-8816-4917-b2b8-00bf33882305 c3b12506e76a9f1d11836420dc27bb71 {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.RNA-Seq.transcriptome.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.transcriptome.gdc_realn.bam 9754607375 BAM transcriptome harmonized CPTAC3 3f065edc-b6cd-4899-a0ff-059ab6704dd8 65fd35a0b4b753e7fc6d962499ffc40e {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor"} -C3L-02963.WGS.A C3L-02963 LSCC WGS tissue_normal CPT0197100009 CPT0197100009.WholeGenome.RP-1303.bam 56969060954 BAM aligned CPTAC3 e2f86765-b9bd-47db-b47b-2b8155fbfae5 7bbe1d492aa6180d981b8025ce06836a {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.WGS.A.hg38 C3L-02963 LSCC WGS tissue_normal CPT0197100009 20097d24-a552-4d2a-b448-783b6d1a22b6_wgs_gdc_realn.bam 82234644249 BAM harmonized CPTAC3 6623be12-a9f6-4f11-b27b-59c7824ae48a 465424419a7d247a239bb7c9110a5b13 {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.WGS.N C3L-02963 LSCC WGS blood_normal CPT0197830002 CPT0197830002.WholeGenome.RP-1303.bam 64814983970 BAM aligned CPTAC3 10182c03-c277-4ab2-9d30-266b5a88b359 894a40dfd23731f0c2ecdfd53301d4fb {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02963.WGS.N.hg38 C3L-02963 LSCC WGS blood_normal CPT0197830002 d2eb2c7d-21e6-4bbd-b56e-5dd987c3cf88_wgs_gdc_realn.bam 93217700054 BAM harmonized CPTAC3 8016d2ee-3e26-4e8f-8084-fe3500f137f9 866fb7a5197e44520a9fcab6d821c5ec {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02963.WGS.T C3L-02963 LSCC WGS tumor CPT0197090009 CPT0197090009.WholeGenome.RP-1303.bam 71746423658 BAM aligned CPTAC3 dcda9b5c-791f-4be9-81e5-18e0bbb9cac8 f01462c02404ef9be89c4860202d8a78 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor"} -C3L-02963.WGS.T.hg38 C3L-02963 LSCC WGS tumor CPT0197090009 85b7bdbb-a618-4313-8c74-e456b77e87c7_wgs_gdc_realn.bam 103002752943 BAM harmonized CPTAC3 199340d1-43e3-4722-b6dd-0a2d45d16d11 58ae261c6c4e45b6981a6c8c4474c392 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor"} -C3L-02963.WXS.A C3L-02963 LSCC WXS tissue_normal CPT0197100009 CPT0197100009.WholeExome.RP-1303.bam 34020578744 BAM aligned CPTAC3 28840049-011d-4887-a0df-36bc3a501336 b6c9cef3d2c3220d2dc8803d4168da8f {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.WXS.A.hg38 C3L-02963 LSCC WXS tissue_normal CPT0197100009 20097d24-a552-4d2a-b448-783b6d1a22b6_wxs_gdc_realn.bam 45802336443 BAM harmonized CPTAC3 cc06d4e2-99a9-4889-9a8b-14e95e86880e b675fac5ab4d420c93a1f1f062f7103c {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02963.WXS.N C3L-02963 LSCC WXS blood_normal CPT0197830002 CPT0197830002.WholeExome.RP-1303.bam 26870520741 BAM aligned CPTAC3 7ef702a3-045c-4cf7-a014-1fa448f7820c bbbd51b8445b33affe3c9d9e0fdcec63 {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02963.WXS.N.hg38 C3L-02963 LSCC WXS blood_normal CPT0197830002 d2eb2c7d-21e6-4bbd-b56e-5dd987c3cf88_wxs_gdc_realn.bam 36161276731 BAM harmonized CPTAC3 7af14987-fede-4019-89a3-30af14f759ba e10cd4255c2c15e6cf60630718d6c215 {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal"} -C3L-02963.WXS.T C3L-02963 LSCC WXS tumor CPT0197090009 CPT0197090009.WholeExome.RP-1303.bam 24613931148 BAM aligned CPTAC3 96efec24-a427-42bb-8c0d-cd233fb83d67 6b710d88c4914488e50a782044b31e51 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor"} -C3L-02963.WXS.T.hg38 C3L-02963 LSCC WXS tumor CPT0197090009 85b7bdbb-a618-4313-8c74-e456b77e87c7_wxs_gdc_realn.bam 32767503611 BAM harmonized CPTAC3 740272e7-44af-4ec9-a3e1-50dd4f3518f1 12d24678ebef11166168f77a8ebcc455 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor"} -C3L-02964.MethArray.Green.A C3L-02964 LSCC Methylation_Array tissue_normal CPT0197380009 203219670019_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ec5b2269-814a-4fb4-a0c9-2e168b958f95 85f2d43b874ae7d1915991b35f9391b0 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.MethArray.Green.T C3L-02964 LSCC Methylation_Array tumor CPT0197210006 203219650004_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 37ebd557-3210-4195-ab9e-27803e7133e9 b64062216a2804bece13eac0fba75560 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor"} -C3L-02964.MethArray.Red.A C3L-02964 LSCC Methylation_Array tissue_normal CPT0197380009 203219670019_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 cd3e7aa8-1e7f-455e-bedd-5f97138b86ec 447ee07cc29eb863a79418976fda3517 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.MethArray.Red.T C3L-02964 LSCC Methylation_Array tumor CPT0197210006 203219650004_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 e68887a0-50ff-4214-a58e-825dcfee8462 2642e928fbd570bcb5165bb43f95d0a1 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor"} -C3L-02964.miRNA-Seq.A.hg38 C3L-02964 LSCC miRNA-Seq tissue_normal CPT0197380006 5f3f7e35-2ceb-4bad-aa18-cc7b0cb5b6c5_mirnaseq_gdc_realn.bam 200000830 BAM harmonized CPTAC3 62ba7e13-10b1-4b26-aa64-70d99601f3cf fbadc8ed2fb477ca7f0ca76934bac0c8 {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.miRNA-Seq.S30_L004_R1.T C3L-02964 LSCC miRNA-Seq tumor CPT0197210009 181219_UNC31-K00269_0173_BHYGJJBBXX_CACGAT_S30_L004_R1_001.unaln.bam 190775166 BAM S30_L004_R1 unaligned CPTAC3 a743dba8-6060-4bac-afea-1bd00f315e1d c6b486b99b6631b0528b285416b31d18 {"aliquot_tag": "ALQ_dc205e34", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02964.miRNA-Seq.S40_L004_R1.A C3L-02964 LSCC miRNA-Seq tissue_normal CPT0197380006 181219_UNC31-K00269_0173_BHYGJJBBXX_GACGAC_S40_L004_R1_001.unaln.bam 177791361 BAM S40_L004_R1 unaligned CPTAC3 2a6ae4b7-b21b-46fa-b730-f84648aec6f4 99701633fc68d96d4dbad3ec7447bed8 {"aliquot_tag": "ALQ_8ad3f271", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.miRNA-Seq.T.hg38 C3L-02964 LSCC miRNA-Seq tumor CPT0197210009 45517893-4884-46fc-923f-f03fc82cdc20_mirnaseq_gdc_realn.bam 207783643 BAM harmonized CPTAC3 41646b04-4219-4397-97a4-26babf1a0af9 81391050918a5ce2932f34757a211b60 {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor"} -C3L-02964.RNA-Seq.chimeric.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.chimeric.gdc_realn.bam 115958371 BAM chimeric harmonized CPTAC3 68eb45d6-0385-4481-9874-c751ca6f9c63 ca4afb47d676e4d957355aa54f5553c9 {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.RNA-Seq.chimeric.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.chimeric.gdc_realn.bam 195956383 BAM chimeric harmonized CPTAC3 d2ce5a52-dfad-4f7a-a43f-a1c3ba572dcd 2477b06244d3eaa25fb37e06ec49d7e3 {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor"} -C3L-02964.RNA-Seq.genomic.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.genomic.gdc_realn.bam 9505753062 BAM genomic harmonized CPTAC3 25420204-d26c-4209-8e71-059804aea046 3f734c9f4f881d5667ccfdef338f9d73 {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.RNA-Seq.genomic.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.genomic.gdc_realn.bam 8140981371 BAM genomic harmonized CPTAC3 b99a7247-1ac7-4403-bc90-cdccef5f454f 8b25c0dde6fdb7d35be73bbe56b21cdb {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor"} -C3L-02964.RNA-Seq.S1_L001_R1.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3331836713 FASTQ S1_L001_R1 unaligned CPTAC3 0e4a24f6-ddd1-451e-a9ef-e9f49e685cd8 92a27742d899ed6c36b4f34490de454d {"aliquot_tag": "ALQ_dc205e34", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02964.RNA-Seq.S1_L001_R2.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R2_001.fastq.gz 3672437349 FASTQ S1_L001_R2 unaligned CPTAC3 aa6beb8f-cdd3-4185-9b2c-0590b814980d 4c23069a4babdd17eb2e6a53109a67cf {"aliquot_tag": "ALQ_dc205e34", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02964.RNA-Seq.S23_L007_R1.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R1_001.fastq.gz 4514200502 FASTQ S23_L007_R1 unaligned CPTAC3 6693c8a1-f9d6-4ff3-b904-6956c6663a19 06c86ec29b1600f678d21254763fdda1 {"aliquot_tag": "ALQ_8ad3f271", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.RNA-Seq.S23_L007_R2.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R2_001.fastq.gz 4656197876 FASTQ S23_L007_R2 unaligned CPTAC3 b3dd5ec6-e199-4959-ac8e-a722c0ef9784 37261c5e40be54b68eb70bb6e43d28d5 {"aliquot_tag": "ALQ_8ad3f271", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.RNA-Seq.transcriptome.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.transcriptome.gdc_realn.bam 13230782160 BAM transcriptome harmonized CPTAC3 499d28ee-4d16-494f-8129-37670f072d92 8bd777ab70d7c29af556dfb2b0485a1a {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.RNA-Seq.transcriptome.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.transcriptome.gdc_realn.bam 8469594906 BAM transcriptome harmonized CPTAC3 838abb22-7d1d-4f3d-b957-e106267287a2 d26555e697c7459770736aa956a9bbc6 {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor"} -C3L-02964.WGS.A C3L-02964 LSCC WGS tissue_normal CPT0197380009 CPT0197380009.WholeGenome.RP-1303.bam 63916710229 BAM aligned CPTAC3 6ab20263-8a1e-41b7-ba50-0b53763bd588 cc2d94a68347eea3aaa758d1b6d60890 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.WGS.A.hg38 C3L-02964 LSCC WGS tissue_normal CPT0197380009 6271eedd-fa77-49ab-b900-e35c35ef9756_wgs_gdc_realn.bam 92480773424 BAM harmonized CPTAC3 66040048-17aa-48eb-95db-ed03a65d10a3 fc37ae5cf6d0fa768685ea018d845138 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.WGS.N C3L-02964 LSCC WGS blood_normal CPT0199140002 CPT0199140002.WholeGenome.RP-1303.bam 58715998067 BAM aligned CPTAC3 76d294cc-e6c7-4357-af87-72d474860117 664d4872a20da2bb6d916260d5aef71c {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02964.WGS.N.hg38 C3L-02964 LSCC WGS blood_normal CPT0199140002 dec8fef6-3592-4fb4-b0e0-5ade153deb94_wgs_gdc_realn.bam 85170591679 BAM harmonized CPTAC3 a90895bc-ccad-45a0-82bf-61a5687c0fef c0a79b220eb26e69f67ddc4fe14a1a6b {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02964.WGS.T C3L-02964 LSCC WGS tumor CPT0197210006 CPT0197210006.WholeGenome.RP-1303.bam 59039323289 BAM aligned CPTAC3 52351f2f-21e3-4aa4-b1c7-60559224902c aac3e97c35ae094158b319ebfb02e982 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor"} -C3L-02964.WGS.T.hg38 C3L-02964 LSCC WGS tumor CPT0197210006 4fafc3a0-d12b-49b5-94ed-8c778bf2901e_wgs_gdc_realn.bam 85276436807 BAM harmonized CPTAC3 e5502135-f4bc-4db5-8cec-1f7e3c72b97d 47aeb31371606feee78fff04dc2334ee {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor"} -C3L-02964.WXS.A C3L-02964 LSCC WXS tissue_normal CPT0197380009 CPT0197380009.WholeExome.RP-1303.bam 21894662765 BAM aligned CPTAC3 086e7790-2876-4bd8-be09-08bb9da039c3 b8517bb3f770efedbb9845e0551f7712 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.WXS.A.hg38 C3L-02964 LSCC WXS tissue_normal CPT0197380009 6271eedd-fa77-49ab-b900-e35c35ef9756_wxs_gdc_realn.bam 29536568445 BAM harmonized CPTAC3 ad7da79f-e246-440e-b348-d9b5b153ddf7 7b5a8d975ed65d9a6b63dfacddc06684 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02964.WXS.N C3L-02964 LSCC WXS blood_normal CPT0199140002 CPT0199140002.WholeExome.RP-1303.bam 27671906019 BAM aligned CPTAC3 3ba02d74-cc0a-4389-9ff2-d0ec44744b81 82c8d94dcc163f40b5de25d7f25cb4df {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02964.WXS.N.hg38 C3L-02964 LSCC WXS blood_normal CPT0199140002 dec8fef6-3592-4fb4-b0e0-5ade153deb94_wxs_gdc_realn.bam 37590415541 BAM harmonized CPTAC3 fe1700a9-ae84-45d9-9932-91f0ecd566f7 5df4286d7543db303522eefbe25b93be {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02964.WXS.T C3L-02964 LSCC WXS tumor CPT0197210006 CPT0197210006.WholeExome.RP-1303.bam 25486980267 BAM aligned CPTAC3 2a557be3-8d84-464a-9376-f66cf51cb2f8 eb2c849dd0f9e179ecd6308fafe57495 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor"} -C3L-02964.WXS.T.hg38 C3L-02964 LSCC WXS tumor CPT0197210006 4fafc3a0-d12b-49b5-94ed-8c778bf2901e_wxs_gdc_realn.bam 34760862674 BAM harmonized CPTAC3 a3738c39-d74c-438a-a367-2240ccada09c 9d8f2fc50543c09840713b570d025507 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor"} -C3L-02967.MethArray.Green.A C3L-02967 LUAD Methylation_Array tissue_normal CPT0218500006 203561450062_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 61f93e0f-c56d-4017-88c6-6c9dcb5aee13 a21fea21c16a3096732880e9a7bb1b83 {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.MethArray.Green.T C3L-02967 LUAD Methylation_Array tumor CPT0218490006 203561620132_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3234f349-4635-493f-82d5-05769db373dc 2e7c83357a8a7935877e49391d97c5ac {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor"} -C3L-02967.MethArray.Red.A C3L-02967 LUAD Methylation_Array tissue_normal CPT0218500006 203561450062_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 f84531d7-4d11-4a9a-b4d6-57bd5cd03139 ddff88a6489d3c5f1d67b8b5e820f5cc {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.MethArray.Red.T C3L-02967 LUAD Methylation_Array tumor CPT0218490006 203561620132_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 e4ad1a31-d4c6-4226-a9d4-e679d1a8aa97 e6a6a91849db1e38cf4c2897dad8c966 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor"} -C3L-02967.miRNA-Seq.A.hg38 C3L-02967 LUAD miRNA-Seq tissue_normal CPT0218500009 00700717-7b35-48d5-acf7-1902dc2d7b2b_mirnaseq_gdc_realn.bam 208942259 BAM harmonized CPTAC3 369c9649-fff8-41b2-add9-8dc31fe4fb3c 8d1fa018077cc342db868b2075c850dd {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.miRNA-Seq.S11_L005_R1.T C3L-02967 LUAD miRNA-Seq tumor CPT0218490009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGTCA_S11_L005_R1_001.unaln.bam 196211259 BAM S11_L005_R1 unaligned CPTAC3 fd931b3c-dc4b-4347-9e64-7bae6680fbe0 113e35f91854a9d98f51d9d8c0af72b5 {"aliquot_tag": "ALQ_2629a171", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02967.miRNA-Seq.S27_L007_R1.A C3L-02967 LUAD miRNA-Seq tissue_normal CPT0218500009 190712_UNC32-K00270_0192_BH7HL3BBXY_TGACCA_S27_L007_R1_001.unaln.bam 178170265 BAM S27_L007_R1 unaligned CPTAC3 76ac7641-f3e3-43a9-a64d-58caf01bb4e6 f05875094a7ce2a3b0169152d7d7d49a {"aliquot_tag": "ALQ_e06510a5", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.miRNA-Seq.T.hg38 C3L-02967 LUAD miRNA-Seq tumor CPT0218490009 8ee77852-ed97-4596-bf5a-ab92559ac741_mirnaseq_gdc_realn.bam 212457070 BAM harmonized CPTAC3 94819d20-a95f-4b98-8aae-c6c6a1e61a7c af56f59c0fdd7fcdea5a2750d06c699a {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor"} -C3L-02967.RNA-Seq.chimeric.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.chimeric.gdc_realn.bam 41469820 BAM chimeric harmonized CPTAC3 449b94c0-47db-4d75-b6dd-2bd10ee066f2 c670c7f2461941c224eb72392af81b51 {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.RNA-Seq.chimeric.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.chimeric.gdc_realn.bam 34962000 BAM chimeric harmonized CPTAC3 fec81d1a-bf90-45cb-9358-1fe0cd66425e 89da451a78bb69b98f2a1f6a273a5081 {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor"} -C3L-02967.RNA-Seq.genomic.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.genomic.gdc_realn.bam 11807848963 BAM genomic harmonized CPTAC3 d0c6d64b-b80c-4796-b25d-619e5ea3a2a5 00f80fcf2a2bbfae2bec9dd277c0c801 {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.RNA-Seq.genomic.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.genomic.gdc_realn.bam 12177490984 BAM genomic harmonized CPTAC3 ccb95db5-f7f3-4459-9a79-7e6038289f07 41fe9f113cddc1eec9ba67244251422a {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor"} -C3L-02967.RNA-Seq.S10_L003_R1.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R1_001.fastq.gz 4161878553 FASTQ S10_L003_R1 unaligned CPTAC3 2cf2a401-36f9-49ac-87f6-125f89c26268 be8fa5c3365c5cad6d1cd44bbeb7f1b9 {"aliquot_tag": "ALQ_2629a171", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02967.RNA-Seq.S10_L003_R2.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R2_001.fastq.gz 4413973501 FASTQ S10_L003_R2 unaligned CPTAC3 ff3cb211-2b49-4377-8d4a-e4c59c5ba8cf f5b95b2ab00b4fdc9dba8cc6fae19151 {"aliquot_tag": "ALQ_2629a171", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02967.RNA-Seq.S21_L006_R1.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R1_001.fastq.gz 4406019809 FASTQ S21_L006_R1 unaligned CPTAC3 ab5129cc-bf87-45e1-b6d3-6bf0f788da3b c5713abf65be689017412a5b649b103b {"aliquot_tag": "ALQ_e06510a5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.RNA-Seq.S21_L006_R2.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R2_001.fastq.gz 4588269752 FASTQ S21_L006_R2 unaligned CPTAC3 802a81dc-79d1-4070-be3c-98ce862c5549 cfa7f35ed8dad53586e1996902f5d507 {"aliquot_tag": "ALQ_e06510a5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.RNA-Seq.transcriptome.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.transcriptome.gdc_realn.bam 9010568866 BAM transcriptome harmonized CPTAC3 1e147efc-f6ec-45c9-9677-2de00cf9193d 38bb7f667adb6c3b05378b48df323c3d {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.RNA-Seq.transcriptome.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.transcriptome.gdc_realn.bam 8574099551 BAM transcriptome harmonized CPTAC3 ab5b3555-b651-41ec-8a78-f9fb6bbd377c 18dc38eeb709937326889795fa746ed5 {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor"} -C3L-02967.WGS.N C3L-02967 LUAD WGS blood_normal CPT0219900002 CPT0219900002.WholeGenome.RP-1303.bam 70923878346 BAM aligned CPTAC3 267e36a1-282a-4262-9db3-fb57c90b369a 0b111f1ac1d9c65d6f52b15c25b5b502 {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-02967.WGS.N.hg38 C3L-02967 LUAD WGS blood_normal CPT0219900002 1a7cb785-23a5-4eb8-9a8a-9ba39041f794_wgs_gdc_realn.bam 103401256299 BAM harmonized CPTAC3 b4d0c158-330c-4f44-99ec-ddf8f5a8ef41 def78d4aac442b986194f8599c175a04 {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-02967.WGS.T C3L-02967 LUAD WGS tumor CPT0218490006 CPT0218490006.WholeGenome.RP-1303.bam 59685349666 BAM aligned CPTAC3 00173aa1-95fe-4baa-bc9b-7fa4f91a5c41 fd54f4e8502f29a033b8d3d91eb86f92 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor"} -C3L-02967.WGS.T.hg38 C3L-02967 LUAD WGS tumor CPT0218490006 5b10df83-32cd-4037-a8c7-108a0db69540_wgs_gdc_realn.bam 87123504863 BAM harmonized CPTAC3 56cf039d-0b49-4bb9-826d-885242df57f3 257b8bc75ac06d6d22ef8dcf929cd6e7 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor"} -C3L-02967.WXS.A C3L-02967 LUAD WXS tissue_normal CPT0218500006 CPT0218500006.WholeExome.RP-1303.bam 24680757628 BAM aligned CPTAC3 1a6f3471-a23d-4dda-b353-0aa9320a672a 21c58fbbe69d344b559d30f581cca228 {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.WXS.A.hg38 C3L-02967 LUAD WXS tissue_normal CPT0218500006 fff5f229-c510-4b99-8b44-b302fb895f43_wxs_gdc_realn.bam 34306887372 BAM harmonized CPTAC3 1faa1dcc-5a30-4f5d-9967-8336721a39a0 9143ffe9cf7c3c5f4be2be1a71f132b3 {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02967.WXS.N C3L-02967 LUAD WXS blood_normal CPT0219900002 CPT0219900002.WholeExome.RP-1303.bam 26610349618 BAM aligned CPTAC3 0aab5eb2-9fb4-491c-a619-9e6ba2e624c7 63b62803c4186dde2aeb10cb9752df2f {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-02967.WXS.N.hg38 C3L-02967 LUAD WXS blood_normal CPT0219900002 1a7cb785-23a5-4eb8-9a8a-9ba39041f794_wxs_gdc_realn.bam 36836328732 BAM harmonized CPTAC3 8f4a8c80-8bee-45bf-b28f-7e29840c65e6 6908f1471da3ac86d9aa7fe1c474d0a8 {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-02967.WXS.T C3L-02967 LUAD WXS tumor CPT0218490006 CPT0218490006.WholeExome.RP-1303.bam 27309051326 BAM aligned CPTAC3 f62c1c46-2cb1-4b18-8e0e-3134b0810c0f 603b51540a7d4b3344c39453d816a984 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor"} -C3L-02967.WXS.T.hg38 C3L-02967 LUAD WXS tumor CPT0218490006 5b10df83-32cd-4037-a8c7-108a0db69540_wxs_gdc_realn.bam 37917467236 BAM harmonized CPTAC3 5b8654df-1722-4c07-b5f5-18aae3daf35c 416b4873a6fe28f6745b844d6235bfe4 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor"} -C3L-02968.MethArray.Green.A C3L-02968 LSCC Methylation_Array tissue_normal CPT0196820009 203220070151_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 69bd3b07-f440-469e-b2e9-6e529818bdf0 f1571fb906e6dd4310dd9184803e99e9 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.MethArray.Green.T C3L-02968 LSCC Methylation_Array tumor CPT0196810009 203219650006_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 aa4c87c2-bc13-449c-b213-8e9d947dfc18 a86efe508463f45275c2414b1cbbc03f {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor"} -C3L-02968.MethArray.Red.A C3L-02968 LSCC Methylation_Array tissue_normal CPT0196820009 203220070151_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 a5b13522-3daf-4a84-89dd-d990f0f56880 e050c91cbcf0a8e77259623d1439d582 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.MethArray.Red.T C3L-02968 LSCC Methylation_Array tumor CPT0196810009 203219650006_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 4167e0e9-f032-4e86-9871-ad89f23475b1 7b9efa5f06d82747a45db49f33b3a8be {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor"} -C3L-02968.miRNA-Seq.A.hg38 C3L-02968 LSCC miRNA-Seq tissue_normal CPT0196820006 52cac0fc-fe8e-417f-b7d2-3e796a6339ed_mirnaseq_gdc_realn.bam 332688041 BAM harmonized CPTAC3 7bf56167-57bc-4db3-8ea4-2972f7c14805 80df26b2c50ce62aced877bb6fbdff68 {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.miRNA-Seq.S18_L003_R1.T C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTCCGC_S18_L003_R1_001.unaln.bam 155660988 BAM S18_L003_R1 unaligned CPTAC3 3d100197-9e71-45bd-962a-b12bef470313 40ec72cf9258f0f4b848546c72cc0cf5 {"aliquot_tag": "ALQ_4b736b77", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02968.miRNA-Seq.S18_L007_R1.T C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L007_R1_001.unaln.bam 134076490 BAM S18_L007_R1 unaligned CPTAC3 a13af603-73ce-4ed0-9dc2-20cf609a7397 f80806970aab4e2da6e43029bbd567f4 {"aliquot_tag": "ALQ_4b736b77", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02968.miRNA-Seq.S46_L004_R1.A C3L-02968 LSCC miRNA-Seq tissue_normal CPT0196820006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGAAG_S46_L004_R1_001.unaln.bam 295941591 BAM S46_L004_R1 unaligned CPTAC3 3f14de1b-839a-407d-a007-1a3d0dddddac 2577b8604eb104376ef2d260560f73ac {"aliquot_tag": "ALQ_cd311a7", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.miRNA-Seq.T.hg38 C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 04764cfc-654c-4d24-b176-b28898f2e3a7_mirnaseq_gdc_realn.bam 338669728 BAM harmonized CPTAC3 1269eb51-6dca-4f60-9059-abc4dd73020d 33ce6c0ccf39f746fad94e7e1ce39f23 {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor"} -C3L-02968.RNA-Seq.chimeric.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.chimeric.gdc_realn.bam 280854105 BAM chimeric harmonized CPTAC3 9ec456cc-bed6-4f87-b2f9-be9861b722e4 bf78e1a11433107e2b5c91ba80f4522a {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.RNA-Seq.chimeric.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.chimeric.gdc_realn.bam 136149334 BAM chimeric harmonized CPTAC3 9482471a-3346-4f21-8a69-ee5c467c5537 a4990d6210376b36f9060f9f7b78a100 {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor"} -C3L-02968.RNA-Seq.genomic.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.genomic.gdc_realn.bam 6420436507 BAM genomic harmonized CPTAC3 9d973214-1d07-4181-bd6f-8b2f7670e48c e3ec53f11738258d5451c34d20c5ed23 {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.RNA-Seq.genomic.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.genomic.gdc_realn.bam 7924451798 BAM genomic harmonized CPTAC3 1da9890d-7079-4ed9-805e-0f3f5d717317 cde5941ee945677a822c616eb8f78fdd {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor"} -C3L-02968.RNA-Seq.S17_L005_R1.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R1_001.fastq.gz 2860490376 FASTQ S17_L005_R1 unaligned CPTAC3 d0c31960-1ba0-4298-afba-1608f1298487 2839a9087d9752446a5fee4cdcec9523 {"aliquot_tag": "ALQ_cd311a7", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.RNA-Seq.S17_L005_R2.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R2_001.fastq.gz 3220097960 FASTQ S17_L005_R2 unaligned CPTAC3 a7bfcb14-c8f7-45ea-9e19-e328231fdbd6 b342626a5b1b525ad9373b8068ed3e67 {"aliquot_tag": "ALQ_cd311a7", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.RNA-Seq.S28_L006_R1.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R1_001.fastq.gz 3592707828 FASTQ S28_L006_R1 unaligned CPTAC3 29d21104-d9a2-4a45-8b43-c10348d1cf81 9d122ae58ada7d8c3f39dd5a3471d7a2 {"aliquot_tag": "ALQ_4b736b77", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02968.RNA-Seq.S28_L006_R2.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R2_001.fastq.gz 3696351903 FASTQ S28_L006_R2 unaligned CPTAC3 86c676c8-2d55-4918-a124-7a26d394a401 827138cd7bd6448f1bef18cc790f5e0b {"aliquot_tag": "ALQ_4b736b77", "sample": "S28", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02968.RNA-Seq.transcriptome.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.transcriptome.gdc_realn.bam 7020119582 BAM transcriptome harmonized CPTAC3 00904565-9953-412f-9d55-4ff719afbc5b bd1af0fcc74a438e8ab5989378f20eda {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.RNA-Seq.transcriptome.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.transcriptome.gdc_realn.bam 10136678376 BAM transcriptome harmonized CPTAC3 161cc3fd-bc7a-49b4-9580-a4edef738fe8 509e90b20fa25e912d56415f73f479a6 {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor"} -C3L-02968.WGS.A C3L-02968 LSCC WGS tissue_normal CPT0196820009 CPT0196820009.WholeGenome.RP-1303.bam 54195414822 BAM aligned CPTAC3 69283f94-9de7-4889-a2c8-b6f001553061 2e1115ae92bfe9c1e313bcaff2e0ada3 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.WGS.A.hg38 C3L-02968 LSCC WGS tissue_normal CPT0196820009 1ebfd6b6-905c-49b0-bbae-0914b9b30b55_wgs_gdc_realn.bam 78544372657 BAM harmonized CPTAC3 f51a9e67-53d2-466f-8fc4-37c1581886be 2f935f7ee8320ee185f31e23e2f0fe94 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.WGS.N C3L-02968 LSCC WGS blood_normal CPT0197760002 CPT0197760002.WholeGenome.RP-1303.bam 60272076356 BAM aligned CPTAC3 cc233f99-f46d-4fb1-af27-22e8b98b51c8 14c1c4a960e1525582181b8376e3b973 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02968.WGS.N.hg38 C3L-02968 LSCC WGS blood_normal CPT0197760002 e610b46f-890b-4983-92e8-8068231b156f_wgs_gdc_realn.bam 87170458713 BAM harmonized CPTAC3 6360b9dc-ba81-4a30-b7e0-4ef9f66ca0ef a18d3f1ecd75bf622c587093cd2a6799 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02968.WGS.T C3L-02968 LSCC WGS tumor CPT0196810009 CPT0196810009.WholeGenome.RP-1303.bam 66386098472 BAM aligned CPTAC3 ab4c3bdb-cf55-4ae7-ae43-f224c0941654 e8549d31eeeea15ff936f392de2bcde4 {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor"} -C3L-02968.WGS.T.hg38 C3L-02968 LSCC WGS tumor CPT0196810009 db738e74-7347-44e7-93c3-128a4de48f7d_wgs_gdc_realn.bam 96292591008 BAM harmonized CPTAC3 dd3d17d3-1c72-46e4-812b-54b8a8133692 2b3fdb74a61fe1f4fb2aefbf28724673 {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor"} -C3L-02968.WXS.A C3L-02968 LSCC WXS tissue_normal CPT0196820009 CPT0196820009.WholeExome.RP-1303.bam 40850781307 BAM aligned CPTAC3 a9393e5d-ec88-4729-a79c-c7daa2f04a4d 213fec0b2b98971e8b999a40988f5d0c {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.WXS.A.hg38 C3L-02968 LSCC WXS tissue_normal CPT0196820009 1ebfd6b6-905c-49b0-bbae-0914b9b30b55_wxs_gdc_realn.bam 56342495074 BAM harmonized CPTAC3 16aa1d7d-2240-47c0-bb6e-8102f0c0e8eb e0cd3a1ed27bb8f441b3c4644820af47 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02968.WXS.N C3L-02968 LSCC WXS blood_normal CPT0197760002 CPT0197760002.WholeExome.RP-1303.bam 29536790624 BAM aligned CPTAC3 746a6053-7772-4ec9-95c0-c7320bfb9817 96c56b6895586ed4f5abb25565a89bc9 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02968.WXS.N.hg38 C3L-02968 LSCC WXS blood_normal CPT0197760002 e610b46f-890b-4983-92e8-8068231b156f_wxs_gdc_realn.bam 40162952762 BAM harmonized CPTAC3 45d7684e-34ea-4a8e-8125-1af1b198ce24 ad18bebde4f5f784c6a34ab5b08a7d22 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal"} -C3L-02968.WXS.T C3L-02968 LSCC WXS tumor CPT0196810009 CPT0196810009.WholeExome.RP-1303.bam 37768661305 BAM aligned CPTAC3 ead3bd19-5404-4f1c-984d-cf87c2e11058 30b8b2d33f6bed3ebf1c9ea1f2565f6c {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor"} -C3L-02968.WXS.T.hg38 C3L-02968 LSCC WXS tumor CPT0196810009 db738e74-7347-44e7-93c3-128a4de48f7d_wxs_gdc_realn.bam 52572236594 BAM harmonized CPTAC3 d85db18a-86e2-4a70-b290-245f2e3e3990 e1bb2ddcaa364f903c84e66ce437d063 {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor"} -C3L-02969.MethArray.Green.A C3L-02969 LSCC Methylation_Array tissue_normal CPT0217490006 203220070156_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 007f1aba-596f-4d74-8ff7-32834d73baf9 cac66ce8915580b0f56fd2ea46efc30e {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.MethArray.Green.T C3L-02969 LSCC Methylation_Array tumor CPT0217420006 203219640102_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ea717d82-9ca5-4400-b652-4f469bf705d9 375986ac27ea70b66d14a60fe6650358 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor"} -C3L-02969.MethArray.Red.A C3L-02969 LSCC Methylation_Array tissue_normal CPT0217490006 203220070156_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5259d8fa-7192-44f9-af26-61d5188e68b4 cc44941e5f0f5a6900c77b2ad99e325a {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.MethArray.Red.T C3L-02969 LSCC Methylation_Array tumor CPT0217420006 203219640102_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 39510eca-1040-4770-9eeb-8a93244f5aae f2014e0db072b0f9ad054f5777e37d28 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor"} -C3L-02969.miRNA-Seq.A.hg38 C3L-02969 LSCC miRNA-Seq tissue_normal CPT0217490009 fdee183c-7d27-41ca-a426-ad479f5c11c4_mirnaseq_gdc_realn.bam 218743143 BAM harmonized CPTAC3 d9fa64e0-1ab0-4c24-8a94-e4764adf575f c8b2415e4a93626db9f19269a17cbc94 {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.miRNA-Seq.S22_L003_R1.A C3L-02969 LSCC miRNA-Seq tissue_normal CPT0217490009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAACTA_S22_L003_R1_001.unaln.bam 195568179 BAM S22_L003_R1 unaligned CPTAC3 d69dec9e-94f2-4212-858b-69c690e26aa1 f109866bfd81ec1a2b9214388aad5ca1 {"aliquot_tag": "ALQ_d061d198", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.miRNA-Seq.S28_L002_R1.T C3L-02969 LSCC miRNA-Seq tumor CPT0217420009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTTTCG_S28_L002_R1_001.unaln.bam 120067914 BAM S28_L002_R1 unaligned CPTAC3 c4768c5f-90bb-438e-80a8-e5a39b77f610 ee6b082d12f6a2015b0ed12bdd11b3d6 {"aliquot_tag": "ALQ_a7b1e089", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02969.miRNA-Seq.T.hg38 C3L-02969 LSCC miRNA-Seq tumor CPT0217420009 b5086f1b-67ac-47ec-8d66-ecfed8b01e75_mirnaseq_gdc_realn.bam 135245442 BAM harmonized CPTAC3 3d6adc9a-5a62-4fca-98b9-48af6cc4f809 a5590143bc9bc5a0e8051f53299da95d {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor"} -C3L-02969.RNA-Seq.chimeric.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.chimeric.gdc_realn.bam 144928346 BAM chimeric harmonized CPTAC3 b8356575-d6ba-4507-bee6-6521039936f8 e0e64d51cbdbabc23006bb1b33ef201d {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.RNA-Seq.chimeric.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.chimeric.gdc_realn.bam 60883071 BAM chimeric harmonized CPTAC3 50e6668d-b4cd-4e91-874d-461bf8459cff 0d5d08a756bd638ff8a3d8a5491a2cb2 {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor"} -C3L-02969.RNA-Seq.genomic.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.genomic.gdc_realn.bam 9212612558 BAM genomic harmonized CPTAC3 d3f0211c-afd9-446c-9659-c3fe869d027e 5ae4033f12e087554442511620f826d6 {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.RNA-Seq.genomic.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.genomic.gdc_realn.bam 9387583543 BAM genomic harmonized CPTAC3 7ba74335-00d7-4d3d-bfb5-a54c15033e36 8a213af4f9abacf736dde599b3e227be {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor"} -C3L-02969.RNA-Seq.S5_L002_R1.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 4051135372 FASTQ S5_L002_R1 unaligned CPTAC3 00c30ef1-0b13-45a4-bf18-0bd9fb05b1c1 53d4ff0e671a08ffec99c94da587321a {"aliquot_tag": "ALQ_d061d198", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.RNA-Seq.S5_L002_R2.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4520283548 FASTQ S5_L002_R2 unaligned CPTAC3 73df68fc-ee4c-422c-9536-4a2ef378631d c097a31fb31e456a0b4dfb7cd67676df {"aliquot_tag": "ALQ_d061d198", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.RNA-Seq.S6_L007_R1.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R1_001.fastq.gz 4058864935 FASTQ S6_L007_R1 unaligned CPTAC3 c5db9c66-41b1-485f-a6f3-055e5d3f0d2f e1fd6f45e9fd5a0ee5df2839daab5338 {"aliquot_tag": "ALQ_a7b1e089", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02969.RNA-Seq.S6_L007_R2.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R2_001.fastq.gz 4540668482 FASTQ S6_L007_R2 unaligned CPTAC3 a67dc932-9ad9-4edf-a590-9508b9a3c388 64e73d4ac6b809e366219994e685053f {"aliquot_tag": "ALQ_a7b1e089", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02969.RNA-Seq.transcriptome.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.transcriptome.gdc_realn.bam 9508472661 BAM transcriptome harmonized CPTAC3 d5621990-91e7-4378-a5c0-62776b45c430 2276699e73dfa31e17cba691158cc21b {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.RNA-Seq.transcriptome.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.transcriptome.gdc_realn.bam 9823319591 BAM transcriptome harmonized CPTAC3 9351498e-e560-4984-8c04-7dfac0afdfc3 47366f4f2541f0c4ce772c3ee764f438 {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor"} -C3L-02969.WGS.A C3L-02969 LSCC WGS tissue_normal CPT0217490006 CPT0217490006.WholeGenome.RP-1303.bam 52642053650 BAM aligned CPTAC3 b1ad165f-e9af-455e-a3fa-ebcfd2da093f 8899e71d1a2c63c402d13f9c7b4d7e44 {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.WGS.A.hg38 C3L-02969 LSCC WGS tissue_normal CPT0217490006 49e0f1b2-1114-41d1-b285-78712af47ee3_wgs_gdc_realn.bam 76359229965 BAM harmonized CPTAC3 151f172b-0b80-4b17-b1d8-7944707c380d 4c25299f26251cdf68852cdb2ff62a6b {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.WGS.N C3L-02969 LSCC WGS blood_normal CPT0219800002 CPT0219800002.WholeGenome.RP-1303.bam 59735506753 BAM aligned CPTAC3 83c201b2-2e8c-4bd1-98cc-6c7cc6faa1a4 c813b1d4f2a88267af5b8a38730c318d {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal"} -C3L-02969.WGS.N.hg38 C3L-02969 LSCC WGS blood_normal CPT0219800002 0c90e64c-7a0d-44dc-b1a4-1d88d43e1dde_wgs_gdc_realn.bam 88144850145 BAM harmonized CPTAC3 bea6c5f0-48a8-4bdb-b1c7-f5edb92eca84 5082ec493e923df1f8056b91ba1d78ce {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal"} -C3L-02969.WGS.T C3L-02969 LSCC WGS tumor CPT0217420006 CPT0217420006.WholeGenome.RP-1303.bam 57696602573 BAM aligned CPTAC3 ec697406-755b-473a-821f-f1e3dea144cd f67a711e41a0413abdff02b95c4358ac {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor"} -C3L-02969.WGS.T.hg38 C3L-02969 LSCC WGS tumor CPT0217420006 6fa25117-7dbe-4157-991c-8df8657eda53_wgs_gdc_realn.bam 85683028892 BAM harmonized CPTAC3 fc40bdfe-a0a4-4332-b495-4beb709c8bdd 9ec0085d76d29a1c02188c3813625b76 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor"} -C3L-02969.WXS.A C3L-02969 LSCC WXS tissue_normal CPT0217490006 CPT0217490006.WholeExome.RP-1303.bam 26514134139 BAM aligned CPTAC3 3262840b-5ff1-4f72-8334-5defdeb732ab 64b87f17ff217f35ff679cb91c67872f {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.WXS.A.hg38 C3L-02969 LSCC WXS tissue_normal CPT0217490006 49e0f1b2-1114-41d1-b285-78712af47ee3_wxs_gdc_realn.bam 36206828448 BAM harmonized CPTAC3 338b30ff-093e-448c-8df5-84faaceee12b 651206a7a7c18135fa330c22c4e05321 {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal"} -C3L-02969.WXS.N C3L-02969 LSCC WXS blood_normal CPT0219800002 CPT0219800002.WholeExome.RP-1303.bam 28829632265 BAM aligned CPTAC3 4aa055e8-5497-4d5f-aa2a-fdd8c616f2d1 a50045b1e05843194e9e2a72aa04af21 {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal"} -C3L-02969.WXS.N.hg38 C3L-02969 LSCC WXS blood_normal CPT0219800002 0c90e64c-7a0d-44dc-b1a4-1d88d43e1dde_wxs_gdc_realn.bam 39688928666 BAM harmonized CPTAC3 8dbe033e-6dd6-4d4b-a249-84a116bb801e 29fdb3742a88a7986100ae7e32bb5cd2 {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal"} -C3L-02969.WXS.T C3L-02969 LSCC WXS tumor CPT0217420006 CPT0217420006.WholeExome.RP-1303.bam 25256837973 BAM aligned CPTAC3 5528f1ac-eb88-44f6-b7bf-dead5ca95e78 18a06ef95f5be62cb518116cc8dd2efa {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor"} -C3L-02969.WXS.T.hg38 C3L-02969 LSCC WXS tumor CPT0217420006 6fa25117-7dbe-4157-991c-8df8657eda53_wxs_gdc_realn.bam 34826510368 BAM harmonized CPTAC3 b99facdb-d15c-4c60-8305-c0554ba68b09 1b1cef96faafd753a677dd2384e4b1a6 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor"} -C3L-02970.MethArray.Green.T C3L-02970 GBM Methylation_Array tumor CPT0217880006 203219670217_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 46dc4cd6-07f4-48b9-8a6d-5bc8cc5dbd89 c03b1c167d31c605bb230df3d719fdc3 {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor"} -C3L-02970.MethArray.Red.T C3L-02970 GBM Methylation_Array tumor CPT0217880006 203219670217_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 d6fd8f6c-b621-4a7d-bc15-70f205ef1ec7 a0b466d494729fc5fccc62ea94a563ef {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor"} -C3L-02970.miRNA-Seq.S29_L002_R1.T C3L-02970 GBM miRNA-Seq tumor CPT0217880013 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGGCC_S29_L002_R1_001.unaln.bam 185103198 BAM S29_L002_R1 unaligned CPTAC3 33faf90a-b15f-48bc-93c8-d4bb7d1cb146 eef6ebafc746d284a5abe551ecd527a8 {"aliquot_tag": "ALQ_630de00c", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02970.miRNA-Seq.T.hg38 C3L-02970 GBM miRNA-Seq tumor CPT0217880013 1e446c25-0f79-4ade-b721-5e713fd0a9f5_mirnaseq_gdc_realn.bam 221070281 BAM harmonized CPTAC3 81d9d599-2f7e-4623-883c-16d56cce8be1 fbaee462724e9db811c25c0522b582b3 {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor"} -C3L-02970.RNA-Seq.chimeric.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.chimeric.gdc_realn.bam 73578571 BAM chimeric harmonized CPTAC3 1c7f92a1-a912-482e-96fa-044ba3e74475 2df553e2b7d47ee41d7b6ef0abc74d3b {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor"} -C3L-02970.RNA-Seq.genomic.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.genomic.gdc_realn.bam 8057518597 BAM genomic harmonized CPTAC3 766c290c-cd5b-4fbd-a320-5c87c623d74a 7ca553decd22b3bab3763abfc7940e6e {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor"} -C3L-02970.RNA-Seq.S4_L001_R1.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3532091453 FASTQ S4_L001_R1 unaligned CPTAC3 0575a3ab-ff1b-430d-b198-d5fcbec93b3d 63b06b37b50aea2e9fc36960c9b74cf2 {"aliquot_tag": "ALQ_630de00c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02970.RNA-Seq.S4_L001_R2.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4011276075 FASTQ S4_L001_R2 unaligned CPTAC3 f099332e-d453-47ee-a342-6e94fde94579 beff93636de8ec37e944a0360c0e81db {"aliquot_tag": "ALQ_630de00c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02970.RNA-Seq.transcriptome.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.transcriptome.gdc_realn.bam 8446548198 BAM transcriptome harmonized CPTAC3 5a2df5d1-fd95-4a86-819d-6f82e548c4dc 6648da50cd6d59e6f8956a40440bbce4 {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor"} -C3L-02970.WGS.N C3L-02970 GBM WGS blood_normal CPT0219880002 CPT0219880002.WholeGenome.RP-1303.bam 60078628961 BAM aligned CPTAC3 6b88503d-132d-4d1e-bc97-11b3050a469c 1768d604f78ea481f7c59f1579f8b9e4 {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal"} -C3L-02970.WGS.N.hg38 C3L-02970 GBM WGS blood_normal CPT0219880002 61b7727d-fa5b-4787-8df0-c1c0e0662f06_wgs_gdc_realn.bam 88065989978 BAM harmonized CPTAC3 6e191426-5a5f-4ae1-8f35-4abfe09561ca 3acbe75d67bdfda7138c1df1958fcf9e {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal"} -C3L-02970.WGS.T C3L-02970 GBM WGS tumor CPT0217880006 CPT0217880006.WholeGenome.RP-1303.bam 57695348223 BAM aligned CPTAC3 317146df-ce2c-4d46-9b22-91ccef66e6c9 d0216cd37e5d5586f4ae463899799067 {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor"} -C3L-02970.WGS.T.hg38 C3L-02970 GBM WGS tumor CPT0217880006 425c32f8-8376-440c-9f44-e53deebcf65c_wgs_gdc_realn.bam 83131595971 BAM harmonized CPTAC3 8ff31d83-efad-4f1c-becc-9139d5cd9ad6 83b29e1ef701c18fe38d1816077e432e {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor"} -C3L-02970.WXS.N C3L-02970 GBM WXS blood_normal CPT0219880002 CPT0219880002.WholeExome.RP-1303.bam 21081532319 BAM aligned CPTAC3 8410df92-98cf-44d2-a8ca-8fa3225e6a52 2ee8bd274ff1e3b3aafe380799d15a92 {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal"} -C3L-02970.WXS.N.hg38 C3L-02970 GBM WXS blood_normal CPT0219880002 61b7727d-fa5b-4787-8df0-c1c0e0662f06_wxs_gdc_realn.bam 28747305469 BAM harmonized CPTAC3 95a7c37d-79ed-4820-8ce3-fbd193e244fa e616b8b78176edecddad989b3ec43a72 {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal"} -C3L-02970.WXS.T C3L-02970 GBM WXS tumor CPT0217880006 CPT0217880006.WholeExome.RP-1303.bam 23397201110 BAM aligned CPTAC3 57745292-4b18-458c-88ca-e6d042997f29 a7099f3d7b891e5f77155655bddc18ec {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor"} -C3L-02970.WXS.T.hg38 C3L-02970 GBM WXS tumor CPT0217880006 425c32f8-8376-440c-9f44-e53deebcf65c_wxs_gdc_realn.bam 32422047190 BAM harmonized CPTAC3 a94ae929-cf6b-433f-a12a-ed52b3e5e3d3 740100b865cbc3da5e9331e130add889 {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor"} -C3L-02984.MethArray.Green.T C3L-02984 GBM Methylation_Array tumor CPT0190240007 203219760074_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 2f4aed33-62d5-4b7e-b347-aa8db5c3606d efe99760153b2250217aace9fe0b82ef {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor"} -C3L-02984.MethArray.Red.T C3L-02984 GBM Methylation_Array tumor CPT0190240007 203219760074_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 3d3b16f1-da31-4040-8567-154a3bc67483 f0303792a97f95037f2476b0c2a63d7b {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor"} -C3L-02984.miRNA-Seq.S35_L004_R1.T C3L-02984 GBM miRNA-Seq tumor CPT0190240010 181219_UNC31-K00269_0173_BHYGJJBBXX_CCAACA_S35_L004_R1_001.unaln.bam 300691765 BAM S35_L004_R1 unaligned CPTAC3 1c2fc3de-507c-4eaa-b32f-6264bd1b20db fe2565b54e309a74489678826acbb10f {"aliquot_tag": "ALQ_b1a0662f", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02984.miRNA-Seq.T.hg38 C3L-02984 GBM miRNA-Seq tumor CPT0190240010 3be475db-a5c2-47d9-ab85-ce875a57dae2_mirnaseq_gdc_realn.bam 345560822 BAM harmonized CPTAC3 15e8ebf9-accb-4845-bd3a-f7ea0827fe3d a2978006bf8c8d3ab017cde74b0935a4 {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor"} -C3L-02984.RNA-Seq.chimeric.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.chimeric.gdc_realn.bam 178249678 BAM chimeric harmonized CPTAC3 9fde700d-3863-4ace-9848-c12e99b3c3bb 4b6e82263753ce427c4c660a033a8e21 {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor"} -C3L-02984.RNA-Seq.genomic.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.genomic.gdc_realn.bam 6352093350 BAM genomic harmonized CPTAC3 f1205de9-684e-4a6c-b7ba-5c53fe3a90c4 890c6756ae3e775c00d6a8cfa90fc4dc {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor"} -C3L-02984.RNA-Seq.S7_L002_R1.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 2810736021 FASTQ S7_L002_R1 unaligned CPTAC3 76f376b0-2060-4210-91a5-7a9c455f5a06 b941036a99280f8d23b4b30feea436c6 {"aliquot_tag": "ALQ_b1a0662f", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02984.RNA-Seq.S7_L002_R2.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 2953074405 FASTQ S7_L002_R2 unaligned CPTAC3 11d1d3d7-9d95-4062-8f5f-87972e664b99 39d560fe0a11144f75ee060c106e3ba0 {"aliquot_tag": "ALQ_b1a0662f", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02984.RNA-Seq.transcriptome.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.transcriptome.gdc_realn.bam 5552294237 BAM transcriptome harmonized CPTAC3 ca4a895d-80af-4af0-a05c-ddbee224cf63 c33cc70e0efa28a2cc376d27fe767cb5 {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor"} -C3L-02984.WGS.N C3L-02984 GBM WGS blood_normal CPT0191140002 CPT0191140002.WholeGenome.RP-1303.bam 54115104663 BAM aligned CPTAC3 65b9254f-e641-45c7-8f6d-2efc182f471f 07aa0bb822e9f3191a089c24fa14a52c {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal"} -C3L-02984.WGS.N.hg38 C3L-02984 GBM WGS blood_normal CPT0191140002 e5ddf63e-02bd-4bdc-b9ce-a6a7f6a7f918_wgs_gdc_realn.bam 79654917121 BAM harmonized CPTAC3 5818d333-beab-43be-82c1-0dd0d4b9dc2b 8ffa6279c43d0e1097d53e32ec4d3b57 {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal"} -C3L-02984.WGS.T C3L-02984 GBM WGS tumor CPT0190240007 CPT0190240007.WholeGenome.RP-1303.bam 54669566821 BAM aligned CPTAC3 29dfa34a-203b-4e91-ae2a-1a3cdd03a0a1 355448332048a4509dd75d3ea91de4e4 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor"} -C3L-02984.WGS.T.hg38 C3L-02984 GBM WGS tumor CPT0190240007 37514624-b499-4178-817a-435023a8082b_wgs_gdc_realn.bam 80406133029 BAM harmonized CPTAC3 298fcf17-cd78-4194-8336-640ea15e3758 f6a430ac758d2726d2b6c6709105ae70 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor"} -C3L-02984.WXS.N C3L-02984 GBM WXS blood_normal CPT0191140002 CPT0191140002.WholeExome.RP-1303.bam 23964872836 BAM aligned CPTAC3 2971dcce-672a-42e0-a04d-b7f9ec9449aa af005fdd8ef3444796e0d07b18479c69 {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal"} -C3L-02984.WXS.N.hg38 C3L-02984 GBM WXS blood_normal CPT0191140002 e5ddf63e-02bd-4bdc-b9ce-a6a7f6a7f918_wxs_gdc_realn.bam 32945135839 BAM harmonized CPTAC3 d937ec79-2027-4566-89d5-c7bf0b0a1347 8783e4a0c22062a803aa698728588253 {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal"} -C3L-02984.WXS.T C3L-02984 GBM WXS tumor CPT0190240007 CPT0190240007.WholeExome.RP-1303.bam 25077428993 BAM aligned CPTAC3 9cc19be6-36bb-4cc7-9327-0a93f8ee8369 ea72dd6e3af9500318fa0c9ac328ab59 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor"} -C3L-02984.WXS.T.hg38 C3L-02984 GBM WXS tumor CPT0190240007 37514624-b499-4178-817a-435023a8082b_wxs_gdc_realn.bam 34063060034 BAM harmonized CPTAC3 26187774-b415-4575-b28a-0c18171805c0 d19249bbcef82f1749fbddc881021eb2 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor"} -C3L-02990.MethArray.Green.T C3L-02990 UCEC Methylation_Array tumor CPT0238260006 203273630258_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3db46056-da65-4f8f-8301-d5c6aef23a4d 1ef645ced57f6f2f950c12b7d9b3d9a0 {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor"} -C3L-02990.MethArray.Red.T C3L-02990 UCEC Methylation_Array tumor CPT0238260006 203273630258_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 9f7c588f-20b8-446a-b220-4ed347dd1c2f b026d0228b6d00416bb78870e89a12c9 {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor"} -C3L-02990.miRNA-Seq.S24_L004_R1.T C3L-02990 UCEC miRNA-Seq tumor CPT0238260009 190508_UNC31-K00269_0215_BH7FYKBBXY_GGTAGC_S24_L004_R1_001.unaln.bam 145691431 BAM S24_L004_R1 unaligned CPTAC3 86a761ee-1d45-4dcb-8d2c-eb6cb8625299 0c7c57832e2b3e990472bc3cebfd76d8 {"aliquot_tag": "ALQ_3005d2c0", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02990.miRNA-Seq.T.hg38 C3L-02990 UCEC miRNA-Seq tumor CPT0238260009 e5340ca0-0f97-40b8-ad62-ce5d415b6d00_mirnaseq_gdc_realn.bam 164510208 BAM harmonized CPTAC3 bccd66ec-6551-4386-9acb-9ad00268e663 958db53efe6512bf73560908b7428e80 {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.chimeric.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.chimeric.gdc_realn.bam 34194623 BAM chimeric harmonized CPTAC3 ce5cf0c8-1d3a-432f-b24e-54119e663cd6 cb09a8f2f70dcfe968216b1b8ebba8f9 {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.chimeric.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.chimeric.gdc_realn.bam 408048616 BAM chimeric harmonized CPTAC3 82615f24-bfd6-4dff-a853-0328841aaad8 583dd8c3225541c4c065e34b382b0b26 {"aliquot_tag": "ALQ_8f42da37", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.genomic.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.genomic.gdc_realn.bam 8687125108 BAM genomic harmonized CPTAC3 4920b979-6979-42ee-b4fd-c7db4090defd 954f3408da8b16270c57b148cb98ef34 {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.genomic.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.genomic.gdc_realn.bam 18356064273 BAM genomic harmonized CPTAC3 beb6241f-2d81-4e1d-9197-22b9dee75fc2 a92b8cc18f9a3554dcc73478b62a5a6d {"aliquot_tag": "ALQ_8f42da37", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.S11_R1.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R1_001.fastq.gz 11919349405 FASTQ S11_R1 unaligned CPTAC3 bce9e6d3-d5d8-4c66-9e6b-c2878e51ac9e c0f19fae6b6616f31afd905df9d52602 {"aliquot_tag": "ALQ_8f42da37", "sample": "S11", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.S11_R2.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R2_001.fastq.gz 12243951613 FASTQ S11_R2 unaligned CPTAC3 44c9ddbe-7efd-4020-8dd3-ee0c609c99dd 215ed45b1879db0dc792f13ae9c0152e {"aliquot_tag": "ALQ_8f42da37", "sample": "S11", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.S20_L005_R1.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 4088077320 FASTQ S20_L005_R1 unaligned CPTAC3 33933da7-f679-46b2-9cb5-c536aeb6055b 7ec5ec23e5456dd023e88fc2d7764c9e {"aliquot_tag": "ALQ_3005d2c0", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.S20_L005_R2.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4722129857 FASTQ S20_L005_R2 unaligned CPTAC3 b52d46e7-1741-4536-8105-b878ad74b379 a23f072722a545e7261170af2f130634 {"aliquot_tag": "ALQ_3005d2c0", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.transcriptome.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.transcriptome.gdc_realn.bam 10362469591 BAM transcriptome harmonized CPTAC3 cc7771d8-4d01-42f6-8d37-f6b1148bfd4f d7df1f1f223d1b8631939e4f6108da3e {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor"} -C3L-02990.RNA-Seq.transcriptome.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.transcriptome.gdc_realn.bam 9583353435 BAM transcriptome harmonized CPTAC3 49bb70bc-786a-4360-ab54-97b68189d098 4a9082cf554afba5a30517445b478158 {"aliquot_tag": "ALQ_8f42da37", "gdc_sample_type": "Primary Tumor"} -C3L-02990.WGS.N C3L-02990 UCEC WGS blood_normal CPT0238180002 CPT0238180002.WholeGenome.RP-1303.bam 67506416879 BAM aligned CPTAC3 fca77088-475d-4166-836d-69cc432da2e3 017dd565fd94c8f31183181aae5556ab {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal"} -C3L-02990.WGS.N.hg38 C3L-02990 UCEC WGS blood_normal CPT0238180002 1665932e-a10d-4127-b849-6bebfa2f3730_wgs_gdc_realn.bam 97448453229 BAM harmonized CPTAC3 ebfa0769-a427-48d7-82a1-02bcba2c7f14 b17cf3fb25f80e612283c861481923a1 {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal"} -C3L-02990.WGS.T C3L-02990 UCEC WGS tumor CPT0238260006 CPT0238260006.WholeGenome.RP-1303.bam 78684046559 BAM aligned CPTAC3 7a5b7822-51a8-4b3b-8132-32fe04142650 2f4b490f28fea88ea1f733f79b6b6bb0 {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor"} -C3L-02990.WGS.T.hg38 C3L-02990 UCEC WGS tumor CPT0238260006 718e7147-7ac0-4ffa-b3c7-5f6c041694b6_wgs_gdc_realn.bam 116788648913 BAM harmonized CPTAC3 3a8429ab-4990-46c8-a4f7-f553d7bdb5b8 8854e29545e0c0a1aa18e3212ca603de {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor"} -C3L-02990.WXS.N C3L-02990 UCEC WXS blood_normal CPT0238180002 CPT0238180002.WholeExome.RP-1303.bam 24594780744 BAM aligned CPTAC3 421144c9-7c65-4d2f-868f-353eb252084c c63b3dd9419e8b55a62d756474eb45f6 {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal"} -C3L-02990.WXS.N.hg38 C3L-02990 UCEC WXS blood_normal CPT0238180002 1665932e-a10d-4127-b849-6bebfa2f3730_wxs_gdc_realn.bam 34443814999 BAM harmonized CPTAC3 cddad781-29c0-44ef-86f7-9b2e571287cd 2710d0bbe72c6d64b3c2353b5fea173a {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal"} -C3L-02990.WXS.T C3L-02990 UCEC WXS tumor CPT0238260006 CPT0238260006.WholeExome.RP-1303.bam 28275998877 BAM aligned CPTAC3 95af935e-e58f-4030-b0f5-35f4413da052 66273511cbb73f162a1b9fd42368de0c {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor"} -C3L-02990.WXS.T.hg38 C3L-02990 UCEC WXS tumor CPT0238260006 718e7147-7ac0-4ffa-b3c7-5f6c041694b6_wxs_gdc_realn.bam 39237642914 BAM harmonized CPTAC3 cb9deb1a-6f5e-4e89-9697-aeedae23b695 a31a3e2422e74527fa8e07e9e4413e4b {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor"} -C3L-03123.MethArray.Green.T C3L-03123 PDA Methylation_Array tumor CPT0166760007 203561620016_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 cc6c0fab-59e5-4edc-a35c-b6ebe6814a7c b6d451d7f32f6871a0683b881a872f89 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03123.MethArray.Red.T C3L-03123 PDA Methylation_Array tumor CPT0166760007 203561620016_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 6b503521-a959-4382-a1e8-f1b10bf5f771 bee283a9e9dc6ef00930c9bd030715cb {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03123.miRNA-Seq.A.hg38 C3L-03123 PDA miRNA-Seq tissue_normal CPT0166780007 11925c58-8d29-4a1c-aafe-8a676cb3dcdb_mirnaseq_gdc_realn.bam 265172416 BAM harmonized CPTAC3 e696e253-3a7f-4b0e-aad7-c19f56a0ee3b cefe94bf61f06d4f9bacd3fd6bd655cd {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03123.miRNA-Seq.S141_L007_R1.A C3L-03123 PDA miRNA-Seq tissue_normal CPT0166780007 190828_UNC32-K00270_0200_BH7GVJBBXY_CACTCA_S141_L007_R1_001.unaln.bam 231982570 BAM S141_L007_R1 unaligned CPTAC3 f7b73545-d227-4312-b560-805bd2232fa0 0b49e7d39e76f0a9e317f15710477a14 {"aliquot_tag": "ALQ_191299e9", "sample": "S141", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03123.miRNA-Seq.S8_L006_R1.T C3L-03123 PDA miRNA-Seq tumor CPT0166760010 190712_UNC32-K00270_0192_BH7HL3BBXY_CACTCA_S8_L006_R1_001.unaln.bam 193236232 BAM S8_L006_R1 unaligned CPTAC3 dc11bb99-26f8-4117-8584-a46365377b1b f85f22025de3e2d1d3f67f3a922c0457 {"aliquot_tag": "ALQ_215d836a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03123.miRNA-Seq.T.hg38 C3L-03123 PDA miRNA-Seq tumor CPT0166760010 4410d350-40fb-42b8-ad2f-53d72fd5223c_mirnaseq_gdc_realn.bam 219357750 BAM harmonized CPTAC3 6b590371-378b-43ee-8338-81ec7bd2ffa2 0354315578b9e07584685be6b3d92ed9 {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor"} -C3L-03123.RNA-Seq.chimeric.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.chimeric.gdc_realn.bam 25875198 BAM chimeric harmonized CPTAC3 a0a14f6e-20a3-4938-bd57-2a2445c5462c 2d7e3d2660da9a72add179c2c2f96bf9 {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03123.RNA-Seq.chimeric.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.chimeric.gdc_realn.bam 124854557 BAM chimeric harmonized CPTAC3 207e9b7a-a4a8-46a5-91e5-68a018cede53 513f096d25b208bb6741794e626068aa {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor"} -C3L-03123.RNA-Seq.genomic.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.genomic.gdc_realn.bam 8255377556 BAM genomic harmonized CPTAC3 a25acbb9-b087-4b7c-bc24-9ecbc2b86ff7 267116a7ad1a855f55e8b15bff27b5d9 {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03123.RNA-Seq.genomic.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.genomic.gdc_realn.bam 8265667683 BAM genomic harmonized CPTAC3 eb041726-4e5c-4174-9fe9-1afeba1af3f2 89f7ffb136d3d5e137e376fa9044e6f4 {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor"} -C3L-03123.RNA-Seq.S19_L005_R1.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R1_001.fastq.gz 3169058428 FASTQ S19_L005_R1 unaligned CPTAC3 e2d0fdac-4a37-4269-acc7-cfc3dacc04e4 40bdd71192ab769b0844766879f01241 {"aliquot_tag": "ALQ_215d836a", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03123.RNA-Seq.S19_L005_R2.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R2_001.fastq.gz 3488356745 FASTQ S19_L005_R2 unaligned CPTAC3 3abb4c46-b45d-47f7-96db-3e8dd86eb0b7 5579ae19030372b0758a63c83d9180cd {"aliquot_tag": "ALQ_215d836a", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03123.RNA-Seq.S26_L007_R1.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R1_001.fastq.gz 3489139847 FASTQ S26_L007_R1 unaligned CPTAC3 b1bc1b4d-602d-4d25-a55e-d6e84c43e251 f238651b2a86d53d5ee470c968856179 {"aliquot_tag": "ALQ_191299e9", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03123.RNA-Seq.S26_L007_R2.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R2_001.fastq.gz 4077257321 FASTQ S26_L007_R2 unaligned CPTAC3 c802bd36-e58d-44a7-b8d6-06e40a797dc9 d907b923940c0963d005db1a0b7ef892 {"aliquot_tag": "ALQ_191299e9", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03123.RNA-Seq.transcriptome.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.transcriptome.gdc_realn.bam 9965229210 BAM transcriptome harmonized CPTAC3 29ae09ac-afd3-4e58-8068-438aa475eb96 3910764d667dd53513d0e5f4445c12f5 {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03123.RNA-Seq.transcriptome.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.transcriptome.gdc_realn.bam 7863915235 BAM transcriptome harmonized CPTAC3 699e0fc0-a9db-4675-9c4b-da51757faefd b2d602acd9b82842e6486fa73cb01a7d {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor"} -C3L-03123.Targeted.T C3L-03123 PDA Targeted_Sequencing tumor CPT0166760007 CPT0166760007.CustomSelection.RP-1303.PDO-18786.bam 4538514126 BAM aligned CPTAC3 dd1c2d44-ecce-4daa-af99-0361d9d16cee 6ef8fa87210db5a9e2f04d7da234c8e2 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03123.Targeted.T.hg38 C3L-03123 PDA Targeted_Sequencing tumor CPT0166760007 8287500c-9568-40a3-a876-1fe7b53ed102_targetedsequencing_gdc_realn.bam 6294415659 BAM harmonized CPTAC3 0b60b409-6f9a-4e2d-8787-4257c5c28122 14be61b3c0cec381d26990a380073042 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03123.WGS.N C3L-03123 PDA WGS blood_normal CPT0166790002 CPT0166790002.WholeGenome.RP-1303.bam 70477416565 BAM aligned CPTAC3 221997f5-aee9-4263-8af0-0752897d5ac0 d6c8bedbf106cfb98a3c836394032fc8 {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03123.WGS.N.hg38 C3L-03123 PDA WGS blood_normal CPT0166790002 750397b5-41fc-4a1b-9653-2b000a24ab2b_wgs_gdc_realn.bam 103357115402 BAM harmonized CPTAC3 00f25890-6095-4014-b61d-8e5c877a1e9e 10dd4b1e027cc1d5e1a7fa3903bbdb77 {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03123.WGS.T C3L-03123 PDA WGS tumor CPT0166760007 CPT0166760007.WholeGenome.RP-1303.bam 83327987355 BAM aligned CPTAC3 1688ef18-6fe9-4b6b-9401-742eab25dd59 e2feed91361ea0ba164a09df783b165a {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03123.WGS.T.hg38 C3L-03123 PDA WGS tumor CPT0166760007 8287500c-9568-40a3-a876-1fe7b53ed102_wgs_gdc_realn.bam 121952511929 BAM harmonized CPTAC3 957acabe-9f52-4208-a140-076de5e5c3ce 1e893b028568b4b6de3bd1f97a6a333f {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03123.WXS.N C3L-03123 PDA WXS blood_normal CPT0166790002 CPT0166790002.WholeExome.RP-1303.bam 35493447153 BAM aligned CPTAC3 4a3f4ba8-3698-4c8d-b974-7a0e8188d04d 06a75b7d24649b97c46c6162fc7a113f {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03123.WXS.N.hg38 C3L-03123 PDA WXS blood_normal CPT0166790002 750397b5-41fc-4a1b-9653-2b000a24ab2b_wxs_gdc_realn.bam 49329488852 BAM harmonized CPTAC3 ff7e34c1-1ec1-43bb-9dec-d6b2332117ca 3012b26ecbbf72f6f50bf4a3f799eea5 {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03123.WXS.T C3L-03123 PDA WXS tumor CPT0166760007 CPT0166760007.WholeExome.RP-1303.bam 47024032591 BAM aligned CPTAC3 fe9f2e2a-5441-4425-a489-1ca18975f66d 23d4a39fdb46fa360db7905d0dc22704 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03123.WXS.T.hg38 C3L-03123 PDA WXS tumor CPT0166760007 8287500c-9568-40a3-a876-1fe7b53ed102_wxs_gdc_realn.bam 65276176884 BAM harmonized CPTAC3 d2c97e4e-aaa6-41e1-872b-2e034ea26299 1b962288dd59120f157b8c889d1ecb79 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor"} -C3L-03126.MethArray.Green.T C3L-03126 PDA Methylation_Array tumor CPT0166850009 203561450103_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 166572b6-60d4-4b88-a68d-83b9f1381301 0308e8650476be1ba16cceb6b27705ee {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03126.MethArray.Red.T C3L-03126 PDA Methylation_Array tumor CPT0166850009 203561450103_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 d55f612f-37ea-43c6-8879-1b01321c0c72 daa3387bc309f2a6c53c0f7b41b56270 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03126.miRNA-Seq.S38_L005_R1.T C3L-03126 PDA miRNA-Seq tumor CPT0166850012 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGTCA_S38_L005_R1_001.unaln.bam 185470771 BAM S38_L005_R1 unaligned CPTAC3 61dfad13-1ec5-433e-8599-9023ad1c02b4 58c6f45eb9c93b420fed40e20fe9019e {"aliquot_tag": "ALQ_79a52a43", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03126.miRNA-Seq.T.hg38 C3L-03126 PDA miRNA-Seq tumor CPT0166850012 1b9d03e5-035b-4d95-ac1d-5407d17fe37e_mirnaseq_gdc_realn.bam 212713772 BAM harmonized CPTAC3 b189cdf0-8c2c-4b24-b939-40c47334d23a f9c0b449d6fdf39d482fc3ccc1a19657 {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor"} -C3L-03126.RNA-Seq.chimeric.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.chimeric.gdc_realn.bam 30600539 BAM chimeric harmonized CPTAC3 50e5c2f0-73e4-4c98-8b6b-ee858ede0531 f6a022a085c52237a4dcbe62db27054a {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor"} -C3L-03126.RNA-Seq.genomic.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.genomic.gdc_realn.bam 7776695946 BAM genomic harmonized CPTAC3 6e77cf3d-a756-4c61-8449-b8af173324f0 bcfdb290a97ee5b10f46b36d35ee2ea9 {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor"} -C3L-03126.RNA-Seq.S24_L006_R1.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 3643177624 FASTQ S24_L006_R1 unaligned CPTAC3 853bc57c-a14b-4bdd-afa6-7f050d1a37d5 385e59afd084210c33dd2fa146f7c198 {"aliquot_tag": "ALQ_79a52a43", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03126.RNA-Seq.S24_L006_R2.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 3944882637 FASTQ S24_L006_R2 unaligned CPTAC3 0edf61ba-566a-4377-899e-8721ecfc3c42 d14c036cbec363bf3044e80495f8c119 {"aliquot_tag": "ALQ_79a52a43", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03126.RNA-Seq.transcriptome.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.transcriptome.gdc_realn.bam 9873713859 BAM transcriptome harmonized CPTAC3 9d5f3fb8-0ab2-45cf-a942-111034a43933 0f0dca5659926e03ebdc121b35e6a098 {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor"} -C3L-03126.Targeted.T C3L-03126 PDA Targeted_Sequencing tumor CPT0166850009 CPT0166850009.CustomSelection.RP-1303.PDO-18786.bam 5156861633 BAM aligned CPTAC3 bc0ffcae-edce-4b12-8227-690a07f57d30 b53234af0dcf54df0d6ac845bba6b112 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03126.Targeted.T.hg38 C3L-03126 PDA Targeted_Sequencing tumor CPT0166850009 b4005656-4f22-47b8-a018-3105dd53b6b8_targetedsequencing_gdc_realn.bam 7230807204 BAM harmonized CPTAC3 44090b63-9a48-4986-9107-be005c734e58 4a9be116a970b0aa0046b39fd8273631 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03126.WGS.N C3L-03126 PDA WGS blood_normal CPT0166880002 CPT0166880002.WholeGenome.RP-1303.bam 61261340000 BAM aligned CPTAC3 6997f4a5-b856-45e9-b307-59452a042310 ca8bd36929c8b24becbb8d06af997f56 {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03126.WGS.N.hg38 C3L-03126 PDA WGS blood_normal CPT0166880002 093ac883-3321-40cd-a651-92d31d03cf68_wgs_gdc_realn.bam 89367390036 BAM harmonized CPTAC3 fe2c33a5-4d60-457b-9ab0-601ccc177539 fee80c99cc98fc9a1272d8c64a89f225 {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03126.WGS.T C3L-03126 PDA WGS tumor CPT0166850009 CPT0166850009.WholeGenome.RP-1303.bam 89192975886 BAM aligned CPTAC3 22cb41f6-095b-4ad1-b0e0-6c3fd0c8c3dc d72b81ed3100e104bb5f501966bae38b {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03126.WGS.T.hg38 C3L-03126 PDA WGS tumor CPT0166850009 b4005656-4f22-47b8-a018-3105dd53b6b8_wgs_gdc_realn.bam 129345488276 BAM harmonized CPTAC3 d4d51fde-0832-487e-951e-ac93d36886ce 8bb816dfc06b10a94846f64c81a8512c {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03126.WXS.N C3L-03126 PDA WXS blood_normal CPT0166880002 CPT0166880002.WholeExome.RP-1303.bam 26145422087 BAM aligned CPTAC3 132aeed7-edd5-4bd9-a758-acb00295e04e 49e43aec41fe4f4e46f6531f6b9d4210 {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03126.WXS.N.hg38 C3L-03126 PDA WXS blood_normal CPT0166880002 093ac883-3321-40cd-a651-92d31d03cf68_wxs_gdc_realn.bam 35547933028 BAM harmonized CPTAC3 9859fbcf-15e7-41ba-b5c6-a598b426cc2b 31e35d121acbdcb60a284ee86976b66c {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03126.WXS.T C3L-03126 PDA WXS tumor CPT0166850009 CPT0166850009.WholeExome.RP-1303.bam 48555629579 BAM aligned CPTAC3 f6457aa6-4845-4e18-ba79-ad29bcf40596 387da32de8634ba9f6b26adf2cf25efc {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03126.WXS.T.hg38 C3L-03126 PDA WXS tumor CPT0166850009 b4005656-4f22-47b8-a018-3105dd53b6b8_wxs_gdc_realn.bam 67376048104 BAM harmonized CPTAC3 3e9c1168-2601-4803-819f-f4c6769d10ca d2012d319ada38dffa19c32183d9d643 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor"} -C3L-03129.MethArray.Green.T C3L-03129 PDA Methylation_Array tumor CPT0166930007 203561620153_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 544307df-a85a-4a5d-9b5a-11bed40bbe98 7640207c5266c1179eaa8ca8f68aa381 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03129.MethArray.Red.T C3L-03129 PDA Methylation_Array tumor CPT0166930007 203561620153_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 83d7f940-8978-4631-aa7a-12dd269f881a ffb4ffe32c7fa48b632341d8fe95db98 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03129.miRNA-Seq.S34_L002_R1.T C3L-03129 PDA miRNA-Seq tumor CPT0166930014 190813_UNC32-K00270_0196_AH5MCWBBXY_ACAGTG_S34_L002_R1_001.unaln.bam 144049335 BAM S34_L002_R1 unaligned CPTAC3 f194f8e7-2b19-40c6-8fb6-1e9c966c40c8 71718342479d29cfe2d0e12847ce73a3 {"aliquot_tag": "ALQ_d4daa973", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03129.miRNA-Seq.T.hg38 C3L-03129 PDA miRNA-Seq tumor CPT0166930014 c933447f-3db9-4885-b12e-ec01655e92a2_mirnaseq_gdc_realn.bam 165270623 BAM harmonized CPTAC3 3f4290c3-2354-452b-8bd6-f9e958e550b2 beb8dcc0db5a196104db6ffb75cd7574 {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor"} -C3L-03129.RNA-Seq.chimeric.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.chimeric.gdc_realn.bam 28660223 BAM chimeric harmonized CPTAC3 fa7c1177-841c-44bf-b79f-d1ede5440471 3201206fd03fd67c332e38d388520b80 {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor"} -C3L-03129.RNA-Seq.genomic.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.genomic.gdc_realn.bam 6848194805 BAM genomic harmonized CPTAC3 ea20ad06-c03b-40ae-a043-a584ab40e9c3 889ecdb7349d9b37dda77b8aea0a869e {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor"} -C3L-03129.RNA-Seq.S7_L002_R1.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R1_001.fastq.gz 3313365104 FASTQ S7_L002_R1 unaligned CPTAC3 e269d17b-c9c3-4ec8-a0ed-bc07de320b79 59668587254a6fa4446896e7eebbb0d3 {"aliquot_tag": "ALQ_d4daa973", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03129.RNA-Seq.S7_L002_R2.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R2_001.fastq.gz 3472229120 FASTQ S7_L002_R2 unaligned CPTAC3 3974e643-473b-42a9-976a-d650465305df 2045648006bb748ecd20b16c76730cd0 {"aliquot_tag": "ALQ_d4daa973", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03129.RNA-Seq.transcriptome.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.transcriptome.gdc_realn.bam 8113184129 BAM transcriptome harmonized CPTAC3 5539b0e0-b0a6-443d-86f3-fd87114dc9d2 43c9fd3d9864893184050fcde473f77f {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor"} -C3L-03129.Targeted.T C3L-03129 PDA Targeted_Sequencing tumor CPT0166930007 CPT0166930007.CustomSelection.RP-1303.PDO-18786.bam 4390428737 BAM aligned CPTAC3 71502fca-4531-485a-a51a-ac1a53b909ec 8afe62e1cf1dca150842e87f26e22493 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03129.Targeted.T.hg38 C3L-03129 PDA Targeted_Sequencing tumor CPT0166930007 ddab10d4-fa91-47e8-a804-ad0e91d59908_targetedsequencing_gdc_realn.bam 6110893803 BAM harmonized CPTAC3 38e1cdff-124a-4a57-828a-520c150427ba 0919428794bd5f68d14c731a8d278b09 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03129.WGS.N C3L-03129 PDA WGS blood_normal CPT0166970002 CPT0166970002.WholeGenome.RP-1303.bam 83924508486 BAM aligned CPTAC3 3d2a655a-6fb5-4484-9823-ff67e5f68244 ec40980d65ced26a92fe2e59b0f1d8f6 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03129.WGS.N.hg38 C3L-03129 PDA WGS blood_normal CPT0166970002 02442908-361f-410e-8476-5e68d61ed91f_wgs_gdc_realn.bam 124661363023 BAM harmonized CPTAC3 b4e74d46-42cc-482a-bda1-14dc3fb5dfb6 3f743cb2e6698fbf35f35355f0091136 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03129.WGS.T C3L-03129 PDA WGS tumor CPT0166930007 CPT0166930007.WholeGenome.RP-1303.bam 75095660573 BAM aligned CPTAC3 e2bff63d-2796-4715-af95-a3796d944faa f94dc7ef21073308e2e6bb3b1c3d4ff5 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03129.WGS.T.hg38 C3L-03129 PDA WGS tumor CPT0166930007 ddab10d4-fa91-47e8-a804-ad0e91d59908_wgs_gdc_realn.bam 111138801199 BAM harmonized CPTAC3 0e80a686-379c-4315-9a09-accd7c17a813 5a35004f292b105bdcf578a47ceeef5f {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03129.WXS.N C3L-03129 PDA WXS blood_normal CPT0166970002 CPT0166970002.WholeExome.RP-1303.bam 28282641123 BAM aligned CPTAC3 70cface7-dd0d-4ae0-80f3-4cecffd4696b 43091c51f13e4d684dce43ddc26b3674 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03129.WXS.N.hg38 C3L-03129 PDA WXS blood_normal CPT0166970002 02442908-361f-410e-8476-5e68d61ed91f_wxs_gdc_realn.bam 38708200112 BAM harmonized CPTAC3 21d9eb71-8b2e-46fb-8f3b-83f895ec7c3d 7244a5967cc0903e04e098505682e482 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03129.WXS.T C3L-03129 PDA WXS tumor CPT0166930007 CPT0166930007.WholeExome.RP-1303.bam 18177495602 BAM aligned CPTAC3 282bc2f9-9ad8-42da-9193-795ab48a4ed6 d13d938e5a60e225703876fffde4aa7d {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03129.WXS.T.hg38 C3L-03129 PDA WXS tumor CPT0166930007 ddab10d4-fa91-47e8-a804-ad0e91d59908_wxs_gdc_realn.bam 25060652567 BAM harmonized CPTAC3 28307d52-ca90-468b-8972-15874891cc33 c1a8b18547142ea896e2a7a68c5925a4 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor"} -C3L-03143.MethArray.Green.T C3L-03143 UCEC Methylation_Array tumor CPT0234080006 203273630261_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e47e19c7-3371-4894-81a9-1ab31a66e3eb e05900eba592854b8853b9fd5e900f97 {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor"} -C3L-03143.MethArray.Red.T C3L-03143 UCEC Methylation_Array tumor CPT0234080006 203273630261_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 7c03fb04-3bc5-4a13-b83d-34783acfeb90 1faec2280d88c55e1e781c60ff4dd5f6 {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor"} -C3L-03143.miRNA-Seq.S30_L004_R1.T C3L-03143 UCEC miRNA-Seq tumor CPT0234080009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACCGG_S30_L004_R1_001.unaln.bam 164396800 BAM S30_L004_R1 unaligned CPTAC3 2c0733e4-8321-4784-8355-1dba5aa89050 e92da04033f7f41af8d8e20baf4cbb41 {"aliquot_tag": "ALQ_55da7de", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03143.miRNA-Seq.T.hg38 C3L-03143 UCEC miRNA-Seq tumor CPT0234080009 1a313a7d-5e35-48eb-b68f-fe367c6c40fd_mirnaseq_gdc_realn.bam 184011093 BAM harmonized CPTAC3 ee12168f-0c9d-40b8-8194-b00f27b6e873 d78aec7d02e5089c485edc7e8fb4081a {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.chimeric.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.chimeric.gdc_realn.bam 39638221 BAM chimeric harmonized CPTAC3 256d68c1-c7bb-43f5-8e9a-fc672a414eee cf8d8b8210c1fc1f5231c867f2c3bc88 {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.chimeric.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.chimeric.gdc_realn.bam 148466280 BAM chimeric harmonized CPTAC3 473a5226-a452-4105-93dc-4b863d40ac15 1aea07cef6c93e610faf468b9fc6d3d0 {"aliquot_tag": "ALQ_f0aab788", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.genomic.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.genomic.gdc_realn.bam 8767597176 BAM genomic harmonized CPTAC3 4fb4918e-08b9-4652-b0f0-1a06b6079821 c880e9d115324cf8db6e842b0e2fbc36 {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.genomic.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.genomic.gdc_realn.bam 7442978173 BAM genomic harmonized CPTAC3 aa5aba6c-35c9-46e5-8987-d4e2881a958b fbe6284fda3c6402eccff27acced99d1 {"aliquot_tag": "ALQ_f0aab788", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.S11_L003_R1.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R1_001.fastq.gz 4275917681 FASTQ S11_L003_R1 unaligned CPTAC3 d10dd270-0122-4c05-afc7-916100671076 e8e08f96b6d1665b338312bcc33c509f {"aliquot_tag": "ALQ_55da7de", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.S11_L003_R2.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R2_001.fastq.gz 4839861052 FASTQ S11_L003_R2 unaligned CPTAC3 69b4c68c-ca86-49d0-982e-d25b6557cca2 2536ef6535af6c23535b456f49fc43cc {"aliquot_tag": "ALQ_55da7de", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.S79_R1.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R1_001.fastq.gz 4003866395 FASTQ S79_R1 unaligned CPTAC3 3025687a-81fe-41b0-a2b8-9368a9dc7624 590f68c1b4293a6f23ba21c51dd31395 {"aliquot_tag": "ALQ_f0aab788", "sample": "S79", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.S79_R2.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R2_001.fastq.gz 4107879253 FASTQ S79_R2 unaligned CPTAC3 ed77dd3c-d562-40bc-8328-4bff4e336130 2f5ae37e76d7990472f8473c759580e5 {"aliquot_tag": "ALQ_f0aab788", "sample": "S79", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.transcriptome.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.transcriptome.gdc_realn.bam 14554117741 BAM transcriptome harmonized CPTAC3 a92885dc-60a9-4531-927b-2fa890d66e42 ce89cee460c44505ad37f7ec112486b9 {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor"} -C3L-03143.RNA-Seq.transcriptome.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.transcriptome.gdc_realn.bam 4288093961 BAM transcriptome harmonized CPTAC3 262098e9-15c9-4633-8a9c-62e1a36b26ec 8757a49956c31f01af62851c2a6b875f {"aliquot_tag": "ALQ_f0aab788", "gdc_sample_type": "Primary Tumor"} -C3L-03143.WGS.N C3L-03143 UCEC WGS blood_normal CPT0234140002 CPT0234140002.WholeGenome.RP-1303.bam 81777282121 BAM aligned CPTAC3 5e8c92ab-8707-41e9-b476-cf8af8395e46 ccfd16dccbac5d8d073598699bf55dac {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03143.WGS.N.hg38 C3L-03143 UCEC WGS blood_normal CPT0234140002 5dc96511-fc19-4b55-b9e0-55b3ef2fb176_wgs_gdc_realn.bam 121296420267 BAM harmonized CPTAC3 848d8f16-6168-4777-bb4d-7d9a895ff808 d2fb0bd593351f5ba61b184a7e7716c9 {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03143.WGS.T C3L-03143 UCEC WGS tumor CPT0234080006 CPT0234080006.WholeGenome.RP-1303.bam 71529515128 BAM aligned CPTAC3 b936861b-adf3-40dd-983f-8d49b446f341 572ec1f14b74a7f507ce6fc512ccdf0d {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor"} -C3L-03143.WGS.T.hg38 C3L-03143 UCEC WGS tumor CPT0234080006 42b2cd2c-215d-443f-9b76-1d80d9b629c5_wgs_gdc_realn.bam 106842266944 BAM harmonized CPTAC3 0666d510-739f-4359-b029-5de8f4a29805 6772c20a3cf9ae4d2bd9a945d00ee94f {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor"} -C3L-03143.WXS.N C3L-03143 UCEC WXS blood_normal CPT0234140002 CPT0234140002.WholeExome.RP-1303.bam 26834864504 BAM aligned CPTAC3 bfb8757c-0214-4893-a440-a685765c187c f7e88a82090eadeaf6151d4fdc3a5c93 {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03143.WXS.N.hg38 C3L-03143 UCEC WXS blood_normal CPT0234140002 5dc96511-fc19-4b55-b9e0-55b3ef2fb176_wxs_gdc_realn.bam 36000643406 BAM harmonized CPTAC3 ef0d1ae5-56fc-4fbf-be91-b4a212d983a4 cae3000af0920be503554a46504ec3d2 {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03143.WXS.T C3L-03143 UCEC WXS tumor CPT0234080006 CPT0234080006.WholeExome.RP-1303.bam 20633881454 BAM aligned CPTAC3 4237ffbc-eeca-4d35-80c6-efbbe4235ef4 e573ea4bf5d18b030c1764ee39d9b43b {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor"} -C3L-03143.WXS.T.hg38 C3L-03143 UCEC WXS tumor CPT0234080006 42b2cd2c-215d-443f-9b76-1d80d9b629c5_wxs_gdc_realn.bam 30018381079 BAM harmonized CPTAC3 e2328dfa-307b-4890-bc96-e41be7a811d1 1e7286d63cf2a5e0be570558c730708b {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor"} -C3L-03152.miRNA-Seq.S41_L002_R1.T C3L-03152 UCEC miRNA-Seq tumor CPT0234630038 190508_UNC31-K00269_0215_BH7FYKBBXY_GACGAC_S41_L002_R1_001.unaln.bam 247865069 BAM S41_L002_R1 unaligned CPTAC3 23d00383-8d77-42ad-8c83-8e97097939d0 f81d24c658c3d4ca972c13aad5b79d2a {"aliquot_tag": "ALQ_f8fe1687", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03152.miRNA-Seq.T.hg38 C3L-03152 UCEC miRNA-Seq tumor CPT0234630038 92793c57-8634-48e6-a13b-d44c5f9aef67_mirnaseq_gdc_realn.bam 278960157 BAM harmonized CPTAC3 697eecd4-1661-4f3e-8ccc-f3cff74a9414 6c357f1e16688ee81bba827c1992af28 {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor"} -C3L-03152.RNA-Seq.chimeric.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.chimeric.gdc_realn.bam 36880693 BAM chimeric harmonized CPTAC3 2f8ab2fa-836b-46ff-87ab-7a5d93caaf5a 91ec070dc163f07a583373d61fb9ca2b {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor"} -C3L-03152.RNA-Seq.genomic.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.genomic.gdc_realn.bam 8584149651 BAM genomic harmonized CPTAC3 cb90f173-90c6-47c6-a8aa-5f7b51de0e0d 152d7438dac51d3bdea7fc12e04fe01e {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor"} -C3L-03152.RNA-Seq.S25_L007_R1.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R1_001.fastq.gz 4282306686 FASTQ S25_L007_R1 unaligned CPTAC3 18238827-1f93-497a-9cca-f382012102e0 5b4339c02d9162a2a68055a2cb1e8654 {"aliquot_tag": "ALQ_f8fe1687", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03152.RNA-Seq.S25_L007_R2.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R2_001.fastq.gz 4765816388 FASTQ S25_L007_R2 unaligned CPTAC3 04db34c0-2681-41e0-a7e9-70d87522b5f2 b034aa5349666089aafaef0eae3fbf61 {"aliquot_tag": "ALQ_f8fe1687", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03152.RNA-Seq.transcriptome.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.transcriptome.gdc_realn.bam 12188557829 BAM transcriptome harmonized CPTAC3 b371d4b1-78a1-44c3-a94b-0677293a9ea4 8e79ab3047ba581be041fc3e48c45172 {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor"} -C3L-03260.MethArray.Green.T C3L-03260 GBM Methylation_Array tumor CPT0189250006 203219650177_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 5a0942e8-d03a-4a4b-ad6e-a0453faf6699 9fcbde7dd6d7210c2b507123fae0f238 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor"} -C3L-03260.MethArray.Red.T C3L-03260 GBM Methylation_Array tumor CPT0189250006 203219650177_R05C01_Red.idat 13676222 IDAT Red NA CPTAC3 ef4699cd-0217-4301-a830-d5c7727d440c 03c488ea267dd7bdd4f20d0ad3d6935e {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor"} -C3L-03260.miRNA-Seq.S7_L003_R1.T C3L-03260 GBM miRNA-Seq tumor CPT0189250009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGATC_S7_L003_R1_001.unaln.bam 395616015 BAM S7_L003_R1 unaligned CPTAC3 b54c19ab-bc31-438a-9f66-9284562c1769 7e72921776f2f44a975273f76d59374c {"aliquot_tag": "ALQ_b5358337", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03260.miRNA-Seq.T.hg38 C3L-03260 GBM miRNA-Seq tumor CPT0189250009 d55af09e-b76d-4dfb-be95-b77afa6083c5_mirnaseq_gdc_realn.bam 440597061 BAM harmonized CPTAC3 9445d563-f2f6-48ce-bc56-63b3a74bf63d 9b2e857615694b9b513fa5a616434d95 {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor"} -C3L-03260.RNA-Seq.chimeric.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.chimeric.gdc_realn.bam 173147188 BAM chimeric harmonized CPTAC3 fd684963-2daf-42c9-be62-f01de81d73e8 422e14cf5d9765d1949f00ab8d9c39e7 {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor"} -C3L-03260.RNA-Seq.genomic.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.genomic.gdc_realn.bam 8296113252 BAM genomic harmonized CPTAC3 d5dcfad0-ff00-4e04-88fb-db1befc8fef4 f65855fdb9c52e1f94cbb48b073a8e2d {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor"} -C3L-03260.RNA-Seq.S5_L002_R1.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R1_001.fastq.gz 3783047594 FASTQ S5_L002_R1 unaligned CPTAC3 5abdb618-d893-4beb-b3cd-274c0b41fe38 ca9d4f7ebb49b2b1d07b70a03b119b35 {"aliquot_tag": "ALQ_b5358337", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03260.RNA-Seq.S5_L002_R2.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R2_001.fastq.gz 4064400209 FASTQ S5_L002_R2 unaligned CPTAC3 f2ed3a7a-ad2e-4277-87a1-35487339dcaa 5ad47b3d3c92cf61014d5dbafbc7fa82 {"aliquot_tag": "ALQ_b5358337", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03260.RNA-Seq.transcriptome.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.transcriptome.gdc_realn.bam 9663164401 BAM transcriptome harmonized CPTAC3 30a06215-164f-4e8b-b874-6292ec21b9d3 6542e27bcfd2607f60ef33cee34599e6 {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor"} -C3L-03260.WGS.N C3L-03260 GBM WGS blood_normal CPT0190200002 CPT0190200002.WholeGenome.RP-1303.bam 58748641881 BAM aligned CPTAC3 6cbb8c3a-9a3b-4859-abab-b66a92d587d7 48c46b8e22303016eb995cec0c2fec51 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal"} -C3L-03260.WGS.N.hg38 C3L-03260 GBM WGS blood_normal CPT0190200002 6a194913-6f77-46e2-8eb6-19fe1ff78405_wgs_gdc_realn.bam 84625597942 BAM harmonized CPTAC3 e38e44be-6fcf-4507-9438-e015dcd8aed1 659092ddb65df36eb0884cb012826503 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal"} -C3L-03260.WGS.T C3L-03260 GBM WGS tumor CPT0189250006 CPT0189250006.WholeGenome.RP-1303.bam 70357795761 BAM aligned CPTAC3 61f46131-6963-4c81-8a89-dd9952629e53 28dd093a939a560a4d8d9076a7aa884d {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor"} -C3L-03260.WGS.T.hg38 C3L-03260 GBM WGS tumor CPT0189250006 a3156b22-4743-4eb4-9d13-0d5be60ef996_wgs_gdc_realn.bam 104119641036 BAM harmonized CPTAC3 63a9920c-6299-4fd3-adc6-82d67426d4ff b2fe741b80ff4ee9fa3aaf1718ebf984 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor"} -C3L-03260.WXS.N C3L-03260 GBM WXS blood_normal CPT0190200002 CPT0190200002.WholeExome.RP-1303.bam 28833002601 BAM aligned CPTAC3 37bbad93-8750-4669-93b2-1336ec00d890 a6f6910f7c62468b42fd76a3393b8060 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal"} -C3L-03260.WXS.N.hg38 C3L-03260 GBM WXS blood_normal CPT0190200002 6a194913-6f77-46e2-8eb6-19fe1ff78405_wxs_gdc_realn.bam 39337293664 BAM harmonized CPTAC3 f43b671d-b7d0-4afb-9492-3f25b9d5995c 20ebd5565774edb49c9d1c617cbe6fa8 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal"} -C3L-03260.WXS.T C3L-03260 GBM WXS tumor CPT0189250006 CPT0189250006.WholeExome.RP-1303.bam 30927408831 BAM aligned CPTAC3 eb0180f7-3827-4044-b73a-7572616e1dac 0d0a196cc9b84e2c44f5f228222bd3b0 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor"} -C3L-03260.WXS.T.hg38 C3L-03260 GBM WXS tumor CPT0189250006 a3156b22-4743-4eb4-9d13-0d5be60ef996_wxs_gdc_realn.bam 42928914301 BAM harmonized CPTAC3 6e2e9aa3-fb05-4645-b146-22f8a77a147f a6aae5ad4d98fca640cb11e35990d036 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor"} -C3L-03262.ADD_1b56ebc3.MethArray.Green.A C3L-03262 LUAD Methylation_Array tissue_normal CPT0189310006 203561450008_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6ff79bd1-90eb-40ce-92de-79e4ac69a826 8806b516410dc2af8dea752ab23744fe {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.ADD_1b56ebc3.MethArray.Red.A C3L-03262 LUAD Methylation_Array tissue_normal CPT0189310006 203561450008_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 5ce5b57a-0bef-4f1c-9e02-12992363cf2d 33325a00fa2138d873118a47c2215499 {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.ADD_1b56ebc3.WXS.A C3L-03262 LUAD WXS tissue_normal CPT0189310006 CPT0189310006.WholeExome.RP-1303.bam 37479624642 BAM aligned CPTAC3 2e7c9d48-09d1-4944-96a5-543c7002f847 600f59b63b0b8a75fc483847ec5344a0 {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.ADD_1b56ebc3.WXS.A.hg38 C3L-03262 LUAD WXS tissue_normal CPT0189310006 8419506b-f9d2-4fb0-bce5-271950429dc6_wxs_gdc_realn.bam 51308609883 BAM harmonized CPTAC3 382cac2a-d4c5-488d-8bda-c5eb0caba64b 0d641e07746bdc9de0238413b60262d7 {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.MethArray.Green.T C3L-03262 LUAD Methylation_Array tumor CPT0189280007 203219650169_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4438bcdd-3702-45f5-9e1d-1b7f453143f3 43b990b5c8ce03dd13070a59e4d37b95 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor"} -C3L-03262.MethArray.Red.T C3L-03262 LUAD Methylation_Array tumor CPT0189280007 203219650169_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 2fcf4c87-5745-4f15-8400-acc7eaee354e f7fe307e9e4bcb84c0a1a5c24e898de7 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor"} -C3L-03262.miRNA-Seq.A.hg38 C3L-03262 LUAD miRNA-Seq tissue_normal CPT0189310009 b5930a04-f24c-459e-b695-d1d8ef8b7dc7_mirnaseq_gdc_realn.bam 309077234 BAM harmonized CPTAC3 65242e56-c359-4191-b4e5-b30a0be47213 9ad11388304c38d37ee2d2aea811c57a {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.miRNA-Seq.S48_L007_R1.T C3L-03262 LUAD miRNA-Seq tumor CPT0189280010 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGGCA_S48_L007_R1_001.unaln.bam 200220207 BAM S48_L007_R1 unaligned CPTAC3 17176827-3f35-4941-840e-918657a45ad4 73492db7b07e489f2781b796bdeaf72a {"aliquot_tag": "ALQ_2d62ce63", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03262.miRNA-Seq.S9_L006_R1.A C3L-03262 LUAD miRNA-Seq tissue_normal CPT0189310009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L006_R1_001.unaln.bam 272725713 BAM S9_L006_R1 unaligned CPTAC3 d10f7516-5a18-434b-8ddd-dd41f973b7e0 6e475905dfe6bab4e3095aedd6a21cb4 {"aliquot_tag": "ALQ_8be9f652", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.miRNA-Seq.T.hg38 C3L-03262 LUAD miRNA-Seq tumor CPT0189280010 d4b39619-5bbe-4fac-9d78-454dfd82821a_mirnaseq_gdc_realn.bam 219721355 BAM harmonized CPTAC3 7364073f-8b8a-4953-a1c4-0887c50bc844 f80b7bc56f9d468a17bb15ed195290cd {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor"} -C3L-03262.RNA-Seq.chimeric.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.chimeric.gdc_realn.bam 52204692 BAM chimeric harmonized CPTAC3 2457cb8a-e1ef-4944-876c-c443f11c6a17 fb72167841a292bc2843465fb440de82 {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.RNA-Seq.chimeric.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.chimeric.gdc_realn.bam 42765717 BAM chimeric harmonized CPTAC3 5cbb64d5-f587-4523-a0d5-f93c5174e1d1 402001631761bdbd6918cff6083a9ae7 {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor"} -C3L-03262.RNA-Seq.genomic.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.genomic.gdc_realn.bam 8476276543 BAM genomic harmonized CPTAC3 b222ca89-0f2c-4461-bdf4-f3c81bca1bc6 186e6aee27528c649eac2e5510e6eb51 {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.RNA-Seq.genomic.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.genomic.gdc_realn.bam 6702338505 BAM genomic harmonized CPTAC3 c593702c-11f0-4efa-b947-b6aeab17c75a 3256443ed51e31860c61854a7fba7d63 {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor"} -C3L-03262.RNA-Seq.S12_L003_R1.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3840371385 FASTQ S12_L003_R1 unaligned CPTAC3 5a08b93b-d972-417f-9eb4-1bb0938b540a cfa4ad144e2d7919f8a3b5344bee7b3d {"aliquot_tag": "ALQ_8be9f652", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.RNA-Seq.S12_L003_R2.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4273435058 FASTQ S12_L003_R2 unaligned CPTAC3 db3a60ba-b8b9-4c8b-a49e-234c1640f018 3c95e0862a35818ef099c045cd81d267 {"aliquot_tag": "ALQ_8be9f652", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.RNA-Seq.S19_L005_R1.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R1_001.fastq.gz 3070816096 FASTQ S19_L005_R1 unaligned CPTAC3 3c370f76-baed-452e-af24-0b557400ea8b 78390bf3f6563075a27341c339b13310 {"aliquot_tag": "ALQ_2d62ce63", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03262.RNA-Seq.S19_L005_R2.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R2_001.fastq.gz 3346174502 FASTQ S19_L005_R2 unaligned CPTAC3 b6dd0e9a-b7ec-418a-8e49-c40d480009dd 75a8d181e244deb0463f298fe152117c {"aliquot_tag": "ALQ_2d62ce63", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03262.RNA-Seq.transcriptome.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.transcriptome.gdc_realn.bam 9013882720 BAM transcriptome harmonized CPTAC3 11c6f0d1-5cad-4979-ac06-29daef1a6cfa 2855bf6bacd224d1663408c13983111b {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03262.RNA-Seq.transcriptome.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.transcriptome.gdc_realn.bam 6788514751 BAM transcriptome harmonized CPTAC3 4746b60c-0730-4c29-9f9f-358f4fd2c551 82a276a095740f909ea30f87504e113f {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor"} -C3L-03262.WGS.N C3L-03262 LUAD WGS blood_normal CPT0190210002 CPT0190210002.WholeGenome.RP-1303.bam 56001124873 BAM aligned CPTAC3 bdbc349f-c96e-4c0f-b6f9-a56a37a748bb 7f1e7642539e24ee9bcdffd6b9000a3f {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal"} -C3L-03262.WGS.N.hg38 C3L-03262 LUAD WGS blood_normal CPT0190210002 a93a956b-f67c-46da-8c83-18e69db799ed_wgs_gdc_realn.bam 82723706130 BAM harmonized CPTAC3 9359c8e3-33ed-4620-9b71-5c479dd2a9f4 db2f0250a524f7391540d8a50bc928f1 {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal"} -C3L-03262.WGS.T C3L-03262 LUAD WGS tumor CPT0189280007 CPT0189280007.WholeGenome.RP-1303.bam 54395352915 BAM aligned CPTAC3 efea4fca-95c3-416a-bce8-f43c22c3bc49 e6f21585b81bc57e582dd32836223dfe {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor"} -C3L-03262.WGS.T.hg38 C3L-03262 LUAD WGS tumor CPT0189280007 a40a3846-3a11-4474-8deb-2a4629226afb_wgs_gdc_realn.bam 81199088175 BAM harmonized CPTAC3 71555590-e695-4782-9f1d-1fea8b8a11f0 e6f72e0a62a8bd5413217a1c62601afd {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor"} -C3L-03262.WXS.N C3L-03262 LUAD WXS blood_normal CPT0190210002 CPT0190210002.WholeExome.RP-1303.bam 21861734499 BAM aligned CPTAC3 81e8863a-716f-4fce-bbac-14c629de6e6b b92f49ab404a22c24b41115c3cc36bd5 {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal"} -C3L-03262.WXS.N.hg38 C3L-03262 LUAD WXS blood_normal CPT0190210002 a93a956b-f67c-46da-8c83-18e69db799ed_wxs_gdc_realn.bam 30007536859 BAM harmonized CPTAC3 376a3956-658f-44ec-ba00-fc88fed38ee1 db20f29690ae856747b16f71d303cab0 {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal"} -C3L-03262.WXS.T C3L-03262 LUAD WXS tumor CPT0189280007 CPT0189280007.WholeExome.RP-1303.bam 23493868991 BAM aligned CPTAC3 70ceb6ad-8420-451e-ac87-5d1925ee7c8e 506d595913efebff0b7e666c1e9e5d25 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor"} -C3L-03262.WXS.T.hg38 C3L-03262 LUAD WXS tumor CPT0189280007 a40a3846-3a11-4474-8deb-2a4629226afb_wxs_gdc_realn.bam 32382226250 BAM harmonized CPTAC3 01fc1bc7-67bc-4971-ad71-827be0b7a10e dc41625f2db49fcb966b9cd994773a44 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor"} -C3L-03264.MethArray.Green.T C3L-03264 UCEC Methylation_Array tumor CPT0225010006 203561450084_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d104a904-e17c-4988-b51b-42ea4f952123 29799605bf229f81830a654d072ee066 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor"} -C3L-03264.MethArray.Red.T C3L-03264 UCEC Methylation_Array tumor CPT0225010006 203561450084_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 62be6484-b666-4156-8b21-dd09d72eca7a 21f47b1ccde3e7747539af6df9870f2f {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor"} -C3L-03264.miRNA-Seq.S32_L004_R1.T C3L-03264 UCEC miRNA-Seq tumor CPT0225010009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACTCA_S32_L004_R1_001.unaln.bam 136485059 BAM S32_L004_R1 unaligned CPTAC3 9b560185-f3f6-4da7-8c82-7faf7f280af4 cc74ec20dbc79354c4ba604df5057ba8 {"aliquot_tag": "ALQ_6290ce85", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03264.miRNA-Seq.T.hg38 C3L-03264 UCEC miRNA-Seq tumor CPT0225010009 31509de3-c200-4f33-bafe-31bfb8b96f9d_mirnaseq_gdc_realn.bam 159824027 BAM harmonized CPTAC3 625118f8-057b-4499-87d4-81e581a3baf2 1d2273b5193e73077ce28f0d01d56b76 {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.chimeric.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.chimeric.gdc_realn.bam 33074568 BAM chimeric harmonized CPTAC3 fa4dcfb0-abc1-496f-b8b2-9c27077fe7ad 8b6863fb9dbdb1365bdc97e7cbb8b090 {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.chimeric.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.chimeric.gdc_realn.bam 109893385 BAM chimeric harmonized CPTAC3 b697a3d2-68b4-4a98-8041-1e6d7a36650a 49947d80d7672ae6ff5bc13028b8a989 {"aliquot_tag": "ALQ_a4abc9c7", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.genomic.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.genomic.gdc_realn.bam 7831804669 BAM genomic harmonized CPTAC3 52895fab-4d9f-4e6b-88f6-03a7172961ef ab92698bdd5979d14629ccf719c0322d {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.genomic.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.genomic.gdc_realn.bam 5923501127 BAM genomic harmonized CPTAC3 ef1837c8-9fc8-4b23-b168-878e05c690f5 139677e7a9bbdc3c2806808066c4ed52 {"aliquot_tag": "ALQ_a4abc9c7", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.S12_L003_R1.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R1_001.fastq.gz 3732369076 FASTQ S12_L003_R1 unaligned CPTAC3 a886e1ec-e5eb-4ae0-8e6c-80db1f2b2bee eb29fdcf7e7c2313311b10d3413d99a3 {"aliquot_tag": "ALQ_6290ce85", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.S12_L003_R2.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R2_001.fastq.gz 4154435970 FASTQ S12_L003_R2 unaligned CPTAC3 87e7cbed-df5d-4f19-bccc-ebcaa17a9576 9491705df58a70a11920eb4371fe65e0 {"aliquot_tag": "ALQ_6290ce85", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.S70_R1.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R1_001.fastq.gz 3262610728 FASTQ S70_R1 unaligned CPTAC3 645ff25d-ffd4-4eee-9e09-5d921e95f431 b3d87a7397c1211461c5280ff2a0630a {"aliquot_tag": "ALQ_a4abc9c7", "sample": "S70", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.S70_R2.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R2_001.fastq.gz 3423913770 FASTQ S70_R2 unaligned CPTAC3 db2853d7-0b49-47dc-85d3-0b33a2ff9f25 68548b01133b7cddc9adabfc3684003a {"aliquot_tag": "ALQ_a4abc9c7", "sample": "S70", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.transcriptome.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.transcriptome.gdc_realn.bam 11330055890 BAM transcriptome harmonized CPTAC3 df2e6536-afd7-4938-a17f-5e68174659b6 d35c1d72d0dc6d6bd77d916a3abfeab8 {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor"} -C3L-03264.RNA-Seq.transcriptome.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.transcriptome.gdc_realn.bam 3580247072 BAM transcriptome harmonized CPTAC3 c55a3272-b124-41b4-9195-ea6039aa0614 7699b582c7fd80d7e939754ffa1bd26b {"aliquot_tag": "ALQ_a4abc9c7", "gdc_sample_type": "Primary Tumor"} -C3L-03264.WGS.N C3L-03264 UCEC WGS blood_normal CPT0226020002 CPT0226020002.WholeGenome.RP-1303.bam 73321037730 BAM aligned CPTAC3 69608827-cd61-4522-b84b-2f5ce6f2352b c211c1697d5f78fc83192b47c4fe251a {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal"} -C3L-03264.WGS.N.hg38 C3L-03264 UCEC WGS blood_normal CPT0226020002 46030a5a-7f1d-436a-b1b1-ddc24aa61ef4_wgs_gdc_realn.bam 104122387946 BAM harmonized CPTAC3 474412fc-4de6-4cea-bd43-f38b31f26baf bdd18332893d68ec1b1095020116350f {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal"} -C3L-03264.WGS.T C3L-03264 UCEC WGS tumor CPT0225010006 CPT0225010006.WholeGenome.RP-1303.bam 103278833081 BAM aligned CPTAC3 4b0f89b4-6416-4ff5-a792-729f1048c08c 32f2029ef3295e5544b578bb6fbc4235 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor"} -C3L-03264.WGS.T.hg38 C3L-03264 UCEC WGS tumor CPT0225010006 ed5f633f-2597-4cdc-9eb3-b042173c07ac_wgs_gdc_realn.bam 150339446288 BAM harmonized CPTAC3 4d016a6d-9d48-4a85-8d4f-c148cea78beb 6859bdbde91ef7741d291d56decbc470 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor"} -C3L-03264.WXS.N C3L-03264 UCEC WXS blood_normal CPT0226020002 CPT0226020002.WholeExome.RP-1303.bam 19702382027 BAM aligned CPTAC3 a7bf5154-42b9-444a-a063-de011b091c91 2c22f8f9e3d4dfe913375354c697a988 {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal"} -C3L-03264.WXS.N.hg38 C3L-03264 UCEC WXS blood_normal CPT0226020002 46030a5a-7f1d-436a-b1b1-ddc24aa61ef4_wxs_gdc_realn.bam 26909055109 BAM harmonized CPTAC3 fd3ea5e9-3317-48ee-acdd-65c6075f2c98 1b46f23da5a22c1e30d172dbc72f1b20 {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal"} -C3L-03264.WXS.T C3L-03264 UCEC WXS tumor CPT0225010006 CPT0225010006.WholeExome.RP-1303.bam 24460399672 BAM aligned CPTAC3 bcbaae67-7348-4934-a39d-ff68e0084410 fee4e4adf7407de80676dc04a1cb3308 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor"} -C3L-03264.WXS.T.hg38 C3L-03264 UCEC WXS tumor CPT0225010006 ed5f633f-2597-4cdc-9eb3-b042173c07ac_wxs_gdc_realn.bam 34456174585 BAM harmonized CPTAC3 e2c5ffe6-376e-438a-b923-912685038fe8 1d46f2e41367479961c3af5aa46698d7 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor"} -C3L-03266.MethArray.Green.T C3L-03266 GBM Methylation_Array tumor CPT0189460006 203220070217_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 fc8f1d1f-eecf-441f-a7a1-b32570e48117 70c5cb1738956c32b3c596e7df20296e {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor"} -C3L-03266.MethArray.Red.T C3L-03266 GBM Methylation_Array tumor CPT0189460006 203220070217_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 769dd25c-9a7a-4303-9cc3-f2f2793628d4 209c705a4150032ebe51a5bc71254d4d {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor"} -C3L-03266.miRNA-Seq.S8_L003_R1.T C3L-03266 GBM miRNA-Seq tumor CPT0189460009 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTTGA_S8_L003_R1_001.unaln.bam 302168951 BAM S8_L003_R1 unaligned CPTAC3 be4e470f-45dc-4741-99d4-4bf9fea3dd20 7db12fbebe27b324d81cf41343182134 {"aliquot_tag": "ALQ_24cc1afa", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03266.miRNA-Seq.T.hg38 C3L-03266 GBM miRNA-Seq tumor CPT0189460009 49f04fce-230f-4798-bb2a-e20f6a41f617_mirnaseq_gdc_realn.bam 345944161 BAM harmonized CPTAC3 521b7c4f-872c-4172-9210-8d81e968aec4 347264366a5f2e04e1d91f17db9e2ffc {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor"} -C3L-03266.RNA-Seq.chimeric.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.chimeric.gdc_realn.bam 54827502 BAM chimeric harmonized CPTAC3 63ab3693-9fdc-4f4b-afb1-c800398d8794 1665978cf525e8df3da43a46d0372c1f {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor"} -C3L-03266.RNA-Seq.genomic.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.genomic.gdc_realn.bam 7498932136 BAM genomic harmonized CPTAC3 09ad5bf0-e972-4b4d-867d-f96dc9cad78d a8fe6a4ffac9ae5c25eb34c1e79d02d0 {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor"} -C3L-03266.RNA-Seq.S6_L002_R1.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3455029772 FASTQ S6_L002_R1 unaligned CPTAC3 f21763d0-27de-4280-9b52-0ed9b74804de 0e8a645812512dff3163c67e87db8a32 {"aliquot_tag": "ALQ_24cc1afa", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03266.RNA-Seq.S6_L002_R2.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3674883650 FASTQ S6_L002_R2 unaligned CPTAC3 fe6554ca-64ab-4ad1-a3de-c87835c34fc0 c79a53ead4b89a08e305a34eb382f432 {"aliquot_tag": "ALQ_24cc1afa", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03266.RNA-Seq.transcriptome.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.transcriptome.gdc_realn.bam 8886524920 BAM transcriptome harmonized CPTAC3 f21395c4-457c-4058-b7fb-c2c6a0c9e89a 69e6a038deb23a81746d7e467692166d {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor"} -C3L-03266.WGS.N C3L-03266 GBM WGS blood_normal CPT0190220002 CPT0190220002.WholeGenome.RP-1303.bam 60060309110 BAM aligned CPTAC3 016ad426-e103-4ec3-8a81-b6eab664922e ff6949a31114e58406b2facf331387dc {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03266.WGS.N.hg38 C3L-03266 GBM WGS blood_normal CPT0190220002 8c46cc2e-aa9c-432b-9955-cfc461c71921_wgs_gdc_realn.bam 87485615811 BAM harmonized CPTAC3 f29969cc-8a9e-417b-b2fd-440773b088f9 20a34668abe6f8afe9810b3ac1ec5833 {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03266.WGS.T C3L-03266 GBM WGS tumor CPT0189460006 CPT0189460006.WholeGenome.RP-1303.bam 54351022135 BAM aligned CPTAC3 ddabb765-cc52-4dec-989d-93d4075268b2 60b27810d71b6f650ead78bb0c742e6c {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor"} -C3L-03266.WGS.T.hg38 C3L-03266 GBM WGS tumor CPT0189460006 93e3b8f0-4da0-4bf0-92f6-e1ce3cf9cd2e_wgs_gdc_realn.bam 80672086264 BAM harmonized CPTAC3 f6f0c65f-b2ac-4875-a94a-46eb3494da28 54ee27f4e026f0c52aa512f9e7e9113e {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor"} -C3L-03266.WXS.N C3L-03266 GBM WXS blood_normal CPT0190220002 CPT0190220002.WholeExome.RP-1303.bam 20829629921 BAM aligned CPTAC3 f179cedb-cf5d-40a8-a4a5-a9fe1396241d f084c5f6b09ee70756365a7a2427f4b2 {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03266.WXS.N.hg38 C3L-03266 GBM WXS blood_normal CPT0190220002 8c46cc2e-aa9c-432b-9955-cfc461c71921_wxs_gdc_realn.bam 28498624581 BAM harmonized CPTAC3 655662cf-22cf-4d53-9449-306669ad2d06 9d194181529bc56fd4be0a5efe9389d3 {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03266.WXS.T C3L-03266 GBM WXS tumor CPT0189460006 CPT0189460006.WholeExome.RP-1303.bam 19587221339 BAM aligned CPTAC3 8f8a2ced-a32e-4280-ad8b-01a16c529149 a0874df474a6c533d0e3aabfc9686407 {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor"} -C3L-03266.WXS.T.hg38 C3L-03266 GBM WXS tumor CPT0189460006 93e3b8f0-4da0-4bf0-92f6-e1ce3cf9cd2e_wxs_gdc_realn.bam 27359089699 BAM harmonized CPTAC3 f9047e62-ef8f-4aa4-b43d-5a09f70365db 35f14d7a64649e28ba63b4a398e3a339 {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor"} -C3L-03268.MethArray.Green.A C3L-03268 LUAD Methylation_Array tissue_normal CPT0249490006 203561620043_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 5229182c-7cca-473e-869d-45eb5d012a18 06de34c4f8f143e8e2fa592ad4c3941a {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.MethArray.Green.T C3L-03268 LUAD Methylation_Array tumor CPT0249450006 203561450025_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9940a24c-b821-406c-932e-f062793938de a4d79b0fb5ad5a5f29aee3ca74b17f61 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor"} -C3L-03268.MethArray.Red.A C3L-03268 LUAD Methylation_Array tissue_normal CPT0249490006 203561620043_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 16ad42f2-108d-48be-906c-0f4110f223c1 7c6a870bdf7c6bea3f092add2df8f199 {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.MethArray.Red.T C3L-03268 LUAD Methylation_Array tumor CPT0249450006 203561450025_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 64b517d8-4100-4071-98e6-01d61bb982c1 b88a15d9102bd77292e53fcdf51e13c9 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor"} -C3L-03268.miRNA-Seq.A.hg38 C3L-03268 LUAD miRNA-Seq tissue_normal CPT0249490009 7a72ba87-c92a-4af0-a444-8e816a8b55bd_mirnaseq_gdc_realn.bam 331123119 BAM harmonized CPTAC3 cfaf4e60-e05e-4345-8b22-ba6512e2d727 1f5f22c6e8eb0b9ddea31f954698f90b {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.miRNA-Seq.S2_L005_R1.A C3L-03268 LUAD miRNA-Seq tissue_normal CPT0249490009 190722_UNC31-K00269_0234_AH7VGTBBXY_GCCAAT_S2_L005_R1_001.unaln.bam 293830307 BAM S2_L005_R1 unaligned CPTAC3 e31d34e0-9b87-4791-9ed6-437f656f7b73 79e7f43d9eba273e75dde5c2c829b07a {"aliquot_tag": "ALQ_c8bea4a1", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.miRNA-Seq.S34_L004_R1.T C3L-03268 LUAD miRNA-Seq tumor CPT0249450009 190722_UNC31-K00269_0234_AH7VGTBBXY_GACGAC_S34_L004_R1_001.unaln.bam 238202438 BAM S34_L004_R1 unaligned CPTAC3 803c52be-7c5b-497f-ad61-da31262dbf33 9be7994907c0e4182e9e4182d95f5316 {"aliquot_tag": "ALQ_d4e49a0", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03268.miRNA-Seq.T.hg38 C3L-03268 LUAD miRNA-Seq tumor CPT0249450009 2c721980-9de0-47f6-9f2f-c39c8f7e8c0a_mirnaseq_gdc_realn.bam 268078730 BAM harmonized CPTAC3 629f7e40-efe1-4e5d-b32b-7501593bd85b e124e24b12e8a138c39a1601b44db66a {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor"} -C3L-03268.RNA-Seq.chimeric.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.chimeric.gdc_realn.bam 43283306 BAM chimeric harmonized CPTAC3 ebb44f95-2ee2-4125-92dd-8e15a3236391 22bcf36e707bfed76b74a01f8f6c8c5c {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.RNA-Seq.chimeric.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.chimeric.gdc_realn.bam 37156045 BAM chimeric harmonized CPTAC3 972f1eeb-6753-4a76-addc-2cb08dd41f17 f36b925149dbd396e64e3cb5693d306a {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor"} -C3L-03268.RNA-Seq.genomic.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.genomic.gdc_realn.bam 10514093419 BAM genomic harmonized CPTAC3 8b0f2a2b-9330-45db-b290-6f4d6ef114d7 9586e4206f64902b8f1bb940ac0b279b {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.RNA-Seq.genomic.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.genomic.gdc_realn.bam 10314894049 BAM genomic harmonized CPTAC3 b566a24c-75b7-4701-96cb-3006221e41bc 51a3709fd9d8b0cbd7893f6d6af40b6a {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor"} -C3L-03268.RNA-Seq.S15_L004_R1.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R1_001.fastq.gz 4220987078 FASTQ S15_L004_R1 unaligned CPTAC3 322fd04f-febc-43d3-bbb8-ddaf962a08d6 6c5d5546eb633300006b8a71dce89c96 {"aliquot_tag": "ALQ_d4e49a0", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03268.RNA-Seq.S15_L004_R2.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R2_001.fastq.gz 4806780620 FASTQ S15_L004_R2 unaligned CPTAC3 ea939946-448c-4142-a18c-ac4b62b5ff82 6d28572206285c1c0472b1f009bd9a38 {"aliquot_tag": "ALQ_d4e49a0", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03268.RNA-Seq.S18_L005_R1.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R1_001.fastq.gz 3624790822 FASTQ S18_L005_R1 unaligned CPTAC3 3d49d2b1-e748-45eb-a127-3462adc294de 48d75a12fdcee57407a44af4a6bd206d {"aliquot_tag": "ALQ_c8bea4a1", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.RNA-Seq.S18_L005_R2.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R2_001.fastq.gz 4059327152 FASTQ S18_L005_R2 unaligned CPTAC3 f3763de5-eccb-463a-9975-dc31fcd7b991 b5908f14eb2652a99de40eca90cf6b17 {"aliquot_tag": "ALQ_c8bea4a1", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.RNA-Seq.transcriptome.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.transcriptome.gdc_realn.bam 7971897414 BAM transcriptome harmonized CPTAC3 09d693f2-5174-4d0c-ba5e-40a1f0dd2815 ef6958aaa78c9499b177998a820d0070 {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.RNA-Seq.transcriptome.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.transcriptome.gdc_realn.bam 9730214610 BAM transcriptome harmonized CPTAC3 ec4d94e5-537e-472f-9237-1f1e7340ec46 fda8363edf8da2c5dd6db670bc883524 {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor"} -C3L-03268.WGS.N C3L-03268 LUAD WGS blood_normal CPT0240420002 CPT0240420002.WholeGenome.RP-1303.bam 64284532344 BAM aligned CPTAC3 1cf2b976-9621-453b-b7d8-65c3f4517e71 7f2d624dea87074f8a9d89280e20a69b {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03268.WGS.N.hg38 C3L-03268 LUAD WGS blood_normal CPT0240420002 d4a11072-a2c7-40c4-a547-6f29bd97e7d7_wgs_gdc_realn.bam 94667130219 BAM harmonized CPTAC3 14553bfe-ad05-4a7f-a759-6ea4eca5e83e 176a68fec0cf8fcb5cace076a7520d18 {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03268.WGS.T C3L-03268 LUAD WGS tumor CPT0249450006 CPT0249450006.WholeGenome.RP-1303.bam 67269590278 BAM aligned CPTAC3 d178848d-fefc-4635-b806-06c2136690f2 e17faf287efdd85dbcfe1cc48e1c1bfc {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor"} -C3L-03268.WGS.T.hg38 C3L-03268 LUAD WGS tumor CPT0249450006 d49c7553-0062-4add-ab9e-4462b7a8c030_wgs_gdc_realn.bam 99319524451 BAM harmonized CPTAC3 1514eb13-3cb8-4aef-91ea-1d8918d3267a c5acdb1f9167334d877a7da9fe515df0 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor"} -C3L-03268.WXS.A C3L-03268 LUAD WXS tissue_normal CPT0249490006 CPT0249490006.WholeExome.RP-1303.bam 22332552079 BAM aligned CPTAC3 4a5c7d53-5f29-4097-b696-50953c17a0e6 4aee07f05c70f2732b5e56b21704cde7 {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.WXS.A.hg38 C3L-03268 LUAD WXS tissue_normal CPT0249490006 cfa05a25-561e-4e4c-846e-b8b4c80bb8bf_wxs_gdc_realn.bam 31139622335 BAM harmonized CPTAC3 ca473d88-2e69-494f-89f7-f6a35a61da69 cbda2684d71892fae62493ebe4416a66 {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03268.WXS.N C3L-03268 LUAD WXS blood_normal CPT0240420002 CPT0240420002.WholeExome.RP-1303.bam 24644178728 BAM aligned CPTAC3 abe8539c-1dab-4ba9-bdc1-4ce36f949c83 d984e8831567ce691e14f7a3003ee625 {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03268.WXS.N.hg38 C3L-03268 LUAD WXS blood_normal CPT0240420002 d4a11072-a2c7-40c4-a547-6f29bd97e7d7_wxs_gdc_realn.bam 34068815146 BAM harmonized CPTAC3 07c4ff2f-d0d6-41e6-83d9-6d1da73ca4fb c4f7384a931e0290b8951bfd0a98a233 {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03268.WXS.T C3L-03268 LUAD WXS tumor CPT0249450006 CPT0249450006.WholeExome.RP-1303.bam 20154849484 BAM aligned CPTAC3 f1632453-1613-4db2-abac-17aaeac4df87 e4da541f3b410077c303c1a1695b07c6 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor"} -C3L-03268.WXS.T.hg38 C3L-03268 LUAD WXS tumor CPT0249450006 d49c7553-0062-4add-ab9e-4462b7a8c030_wxs_gdc_realn.bam 28193452459 BAM harmonized CPTAC3 488ea73b-b9e9-4682-9282-1bc3f466a6c4 6869143abd6bfb05a6203e91e0aeda20 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor"} -C3L-03271.MethArray.Green.A C3L-03271 LUAD Methylation_Array tissue_normal CPT0225280010 203561450025_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ebec4b55-a203-4312-8b70-0b6ccc54577a 23cb1bca90d095688aca1b75e8f6ccc7 {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.MethArray.Green.T C3L-03271 LUAD Methylation_Array tumor CPT0225190007 203561620072_R04C01_Grn.idat 13676227 IDAT Green NA CPTAC3 6bdcd2ac-909e-4d3b-87ac-3ef6a5d5853d 814f9635a6fd6e86e13a1b485a74e270 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor"} -C3L-03271.MethArray.Red.A C3L-03271 LUAD Methylation_Array tissue_normal CPT0225280010 203561450025_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 2166dbca-0b58-4206-9294-bd92de920351 61042aa4c40964dbceb4653800abd637 {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.MethArray.Red.T C3L-03271 LUAD Methylation_Array tumor CPT0225190007 203561620072_R04C01_Red.idat 13676227 IDAT Red NA CPTAC3 2a385e99-ac98-4650-8e06-a95b0b9ef347 cfd131dab1e15b45e4f7ccb6c7560a19 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor"} -C3L-03271.miRNA-Seq.A.hg38 C3L-03271 LUAD miRNA-Seq tissue_normal CPT0225280007 0914f7dd-7139-47c2-892b-43d6501d4f17_mirnaseq_gdc_realn.bam 331571692 BAM harmonized CPTAC3 8c783aee-8722-4ece-afe5-fcf30530c42a a0aa56e9f6ca24018a7abe53ec238e1f {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.miRNA-Seq.S15_L007_R1.A C3L-03271 LUAD miRNA-Seq tissue_normal CPT0225280007 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGAAA_S15_L007_R1_001.unaln.bam 299057474 BAM S15_L007_R1 unaligned CPTAC3 fbebcf72-2e90-4198-b30f-3894e6182419 29f58fa372b820a26e1e35be7fbe4da8 {"aliquot_tag": "ALQ_c5f020f8", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.miRNA-Seq.S27_L004_R1.T C3L-03271 LUAD miRNA-Seq tumor CPT0225190010 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGGCG_S27_L004_R1_001.unaln.bam 151621433 BAM S27_L004_R1 unaligned CPTAC3 b4d1016f-1e1c-4e7d-95c1-5a56ba140e9f 6c6d1fc51070940b370355e76d9e7a8b {"aliquot_tag": "ALQ_f97bdf04", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03271.miRNA-Seq.T.hg38 C3L-03271 LUAD miRNA-Seq tumor CPT0225190010 e7773cfa-65bc-4176-9d4f-e1087291aca2_mirnaseq_gdc_realn.bam 169617939 BAM harmonized CPTAC3 3753a559-a062-4365-854c-8e195e0b14c3 c706a2626255c38a8e49e3919f0b78ab {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor"} -C3L-03271.RNA-Seq.chimeric.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.chimeric.gdc_realn.bam 37235014 BAM chimeric harmonized CPTAC3 cdc3b4bc-f8e1-48d1-80a2-976e340fca85 d87ae0de23ff81958a668b10736653d3 {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.RNA-Seq.chimeric.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.chimeric.gdc_realn.bam 30879641 BAM chimeric harmonized CPTAC3 56d72691-8473-4974-a69d-1b8f94812768 8456bc6dfab9be5c3b5ce70221373343 {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor"} -C3L-03271.RNA-Seq.genomic.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.genomic.gdc_realn.bam 14420673516 BAM genomic harmonized CPTAC3 3f19e45e-62f4-4dcb-a02e-81558d042a62 d4a1ab837a33499db84d8e206649e18d {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.RNA-Seq.genomic.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.genomic.gdc_realn.bam 12669772118 BAM genomic harmonized CPTAC3 ad9d9285-cbf7-4b24-802e-25a9c2f38a96 65ac7927603a195c5239338bfef80392 {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor"} -C3L-03271.RNA-Seq.S23_L006_R1.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R1_001.fastq.gz 4140273095 FASTQ S23_L006_R1 unaligned CPTAC3 a27e5b8d-8802-4454-b093-45e318d4f588 1988fb0a38b1c3f7408f259d8f579466 {"aliquot_tag": "ALQ_f97bdf04", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03271.RNA-Seq.S23_L006_R2.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R2_001.fastq.gz 4770824757 FASTQ S23_L006_R2 unaligned CPTAC3 2d8514dd-2d1b-415c-8714-c0dc66a7d707 3596eb6a2969f74de8d4fd8d10aa10a3 {"aliquot_tag": "ALQ_f97bdf04", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03271.RNA-Seq.S25_L007_R1.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R1_001.fastq.gz 5350308225 FASTQ S25_L007_R1 unaligned CPTAC3 71251649-e452-4738-98ec-25ff0022037c 04ad0e6fa307c15e041b6aa210ed275e {"aliquot_tag": "ALQ_c5f020f8", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.RNA-Seq.S25_L007_R2.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R2_001.fastq.gz 5619188959 FASTQ S25_L007_R2 unaligned CPTAC3 16276d67-c5b4-4b5f-b4d8-8c70205baf09 71923716114a7f6d4c5a89e5798a0e49 {"aliquot_tag": "ALQ_c5f020f8", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.RNA-Seq.transcriptome.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.transcriptome.gdc_realn.bam 11940946908 BAM transcriptome harmonized CPTAC3 1ed2773a-d33d-4bc1-92ac-e1a85cd5ab97 0f1184362679e2531d16aaa5e6e7e805 {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.RNA-Seq.transcriptome.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.transcriptome.gdc_realn.bam 9807412864 BAM transcriptome harmonized CPTAC3 df6ad7fe-b1b1-4e9e-ae70-1364f3cbba2e d9610560d69ccbcf6578b470d0dad9eb {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor"} -C3L-03271.WGS.N C3L-03271 LUAD WGS blood_normal CPT0226040002 CPT0226040002.WholeGenome.RP-1303.bam 56444883358 BAM aligned CPTAC3 38f3ed16-c0ad-45d4-ab38-7eafcec00789 2d8b9f9c3753f8721b39104c6c80d726 {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03271.WGS.N.hg38 C3L-03271 LUAD WGS blood_normal CPT0226040002 561e422d-e4db-4213-8bde-505d3cf49cf7_wgs_gdc_realn.bam 84228170736 BAM harmonized CPTAC3 1699c142-456b-460d-8ae0-7c8eddbb1d4d e4006a6af60f7dbeb65dc325aefd1c3d {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03271.WGS.T C3L-03271 LUAD WGS tumor CPT0225190007 CPT0225190007.WholeGenome.RP-1303.bam 53010533979 BAM aligned CPTAC3 9f195a04-4c8b-45dd-a0cd-e02ef49eaea7 820b1003d678cf2a7beff6e1d3b714a5 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor"} -C3L-03271.WGS.T.hg38 C3L-03271 LUAD WGS tumor CPT0225190007 ce89aed6-750b-4d18-8f28-d4940dc0b546_wgs_gdc_realn.bam 76853161899 BAM harmonized CPTAC3 2f96c07e-aa95-4164-8293-c59b1866b6aa 98bb2e45b0931983cf65bef3b9a04526 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor"} -C3L-03271.WXS.A C3L-03271 LUAD WXS tissue_normal CPT0225280010 CPT0225280010.WholeExome.RP-1303.bam 20203561055 BAM aligned CPTAC3 f2a4f9c2-6d57-464b-bb56-f98e8da6427f a4a04e8be4ad0a17c071582cbca5b28a {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.WXS.A.hg38 C3L-03271 LUAD WXS tissue_normal CPT0225280010 8edc9d2b-08fc-4f02-bf6f-be4dbb5409f7_wxs_gdc_realn.bam 27814325035 BAM harmonized CPTAC3 ff2b0e82-c064-43da-a94f-df99093a9941 10ab481593944207c744acd2c484a821 {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03271.WXS.N C3L-03271 LUAD WXS blood_normal CPT0226040002 CPT0226040002.WholeExome.RP-1303.bam 23867132746 BAM aligned CPTAC3 fe077ed2-7d07-4b18-abb1-062cd3f1be13 759c3934bdcb1edf9d79655e32e3f48f {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03271.WXS.N.hg38 C3L-03271 LUAD WXS blood_normal CPT0226040002 561e422d-e4db-4213-8bde-505d3cf49cf7_wxs_gdc_realn.bam 32909584549 BAM harmonized CPTAC3 e04a60d6-16f7-4194-a160-cec7e0aecf24 b538105ec6827b57c39443eddb14ea2d {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03271.WXS.T C3L-03271 LUAD WXS tumor CPT0225190007 CPT0225190007.WholeExome.RP-1303.bam 21984872323 BAM aligned CPTAC3 176de7f4-427a-4684-b595-9d724542483f df127428ce1bbec45019675787f18fdc {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor"} -C3L-03271.WXS.T.hg38 C3L-03271 LUAD WXS tumor CPT0225190007 ce89aed6-750b-4d18-8f28-d4940dc0b546_wxs_gdc_realn.bam 30442895664 BAM harmonized CPTAC3 5132dfb4-2478-4eb4-80c0-64dd44f603f6 2871a4fcd5bf47397c646f184f2051d1 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor"} -C3L-03272.MethArray.Green.A C3L-03272 LSCC Methylation_Array tissue_normal CPT0225470006 203219650156_R06C01_Grn.idat 13676217 IDAT Green NA CPTAC3 a13f0314-2209-4dd5-b81f-a4fdea609f59 5f1915bea9745cc84f7486f8c21c0b38 {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.MethArray.Green.T C3L-03272 LSCC Methylation_Array tumor CPT0225380006 203220070217_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f569b336-f77a-4f2a-b7fb-8225bd25ba51 13b5892f8e60d32f6817615115270f07 {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor"} -C3L-03272.MethArray.Red.A C3L-03272 LSCC Methylation_Array tissue_normal CPT0225470006 203219650156_R06C01_Red.idat 13676217 IDAT Red NA CPTAC3 8119bd8e-f3a2-41a3-8442-79eef812ce50 8060779643f6a5205a8b533bffd5e9f7 {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.MethArray.Red.T C3L-03272 LSCC Methylation_Array tumor CPT0225380006 203220070217_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 f0ed0d45-8640-41dc-8055-33f22db4a0e3 ec36be01e9f5b6275d3ac4d75bdb65b5 {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor"} -C3L-03272.miRNA-Seq.A.hg38 C3L-03272 LSCC miRNA-Seq tissue_normal CPT0225470009 1f753661-d7bd-470d-ad23-647a9e985c91_mirnaseq_gdc_realn.bam 200789398 BAM harmonized CPTAC3 701702b3-44c5-4a62-abb7-4e2c05ac9e1e 11116a9576c535fa8aeb1a6c2b764cbc {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.miRNA-Seq.S35_L002_R1.T C3L-03272 LSCC miRNA-Seq tumor CPT0225380009 190206_UNC31-K00269_0191_AH2WY5BBXY_AGTTCC_S35_L002_R1_001.unaln.bam 180079119 BAM S35_L002_R1 unaligned CPTAC3 5804b0c5-1908-4bb4-9508-bcd702cb0527 3f917a1771e16e51cea1f79f92550b51 {"aliquot_tag": "ALQ_e914de5a", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03272.miRNA-Seq.S8_L005_R1.A C3L-03272 LSCC miRNA-Seq tissue_normal CPT0225470009 190206_UNC31-K00269_0191_AH2WY5BBXY_TACAGC_S8_L005_R1_001.unaln.bam 178883247 BAM S8_L005_R1 unaligned CPTAC3 779675ea-ff8c-4dbd-a562-12cd3e846d8a fa0ee0e7c8c45fb1731c988895de34c3 {"aliquot_tag": "ALQ_76417933", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.miRNA-Seq.T.hg38 C3L-03272 LSCC miRNA-Seq tumor CPT0225380009 6cf6e03d-a0c8-44e1-9042-818d91caaed7_mirnaseq_gdc_realn.bam 197771145 BAM harmonized CPTAC3 bd504555-de8d-4a88-b7c1-6c70ddc6b123 c2862a1d063bed9fce80514ad760b9ed {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor"} -C3L-03272.RNA-Seq.chimeric.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.chimeric.gdc_realn.bam 253078786 BAM chimeric harmonized CPTAC3 d102c27e-1a15-4efd-b527-80034ed4432d bc03e81e9c1c08f3e18c2a410d038e12 {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.RNA-Seq.chimeric.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.chimeric.gdc_realn.bam 96330892 BAM chimeric harmonized CPTAC3 bd278d8e-2e0e-4388-8722-474eb7c4dda5 de811c8f30af530601552e289acb3237 {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor"} -C3L-03272.RNA-Seq.genomic.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.genomic.gdc_realn.bam 7316808543 BAM genomic harmonized CPTAC3 aac736d7-660e-4eff-9147-ccb1222c0bdf b47d7a807936e0b7c534a0cd8b0aeaf0 {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.RNA-Seq.genomic.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.genomic.gdc_realn.bam 9362922043 BAM genomic harmonized CPTAC3 b5ec089e-37f6-422a-8074-5a61272ca003 169dad94e766237f7c313f3a7410591c {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor"} -C3L-03272.RNA-Seq.S21_L006_R1.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3938286963 FASTQ S21_L006_R1 unaligned CPTAC3 ade6ad8e-5427-41bf-b2b3-338c7b40c786 1d7e4a316b51f94d0ed35c127234f248 {"aliquot_tag": "ALQ_e914de5a", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03272.RNA-Seq.S21_L006_R2.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4212220666 FASTQ S21_L006_R2 unaligned CPTAC3 3f88a9da-1dcb-47f7-9081-5247432544a8 c53a54c435f41b3d87be9d1ec073d159 {"aliquot_tag": "ALQ_e914de5a", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03272.RNA-Seq.S8_L002_R1.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R1_001.fastq.gz 3483728600 FASTQ S8_L002_R1 unaligned CPTAC3 4c8a1673-4bc1-4b47-9166-27890c2664ea cd250600faf22515680e86a2881f33b4 {"aliquot_tag": "ALQ_76417933", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.RNA-Seq.S8_L002_R2.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R2_001.fastq.gz 3777452158 FASTQ S8_L002_R2 unaligned CPTAC3 47bf26e4-b41b-40a3-b114-29cdb58d698b aaa8f081fe3230bde47305b42fb8bbe1 {"aliquot_tag": "ALQ_76417933", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.RNA-Seq.transcriptome.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.transcriptome.gdc_realn.bam 8306796368 BAM transcriptome harmonized CPTAC3 2f1c6935-ca6d-492b-9156-36c00efcc1ec e658b79ea0ebf143f26ccbc21a8f78d1 {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.RNA-Seq.transcriptome.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.transcriptome.gdc_realn.bam 9175863567 BAM transcriptome harmonized CPTAC3 2a04871f-0c4f-40a8-bbe4-04e2598cad34 552373a2349e6e69f887eac30fcc71f6 {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor"} -C3L-03272.WGS.N C3L-03272 LSCC WGS blood_normal CPT0226050002 CPT0226050002.WholeGenome.RP-1303.bam 63386228227 BAM aligned CPTAC3 45d39836-6084-462c-9ba7-7b1430718e9f 1e531da9fda0a65fa924b8dd22387abb {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal"} -C3L-03272.WGS.N.hg38 C3L-03272 LSCC WGS blood_normal CPT0226050002 463e4a08-38ab-408f-ac18-8f6899380f8c_wgs_gdc_realn.bam 92663627417 BAM harmonized CPTAC3 34b966ea-7310-4aad-ab2f-3abbff502e84 2e84a4d5da0d4cb2b5c0cefab5b37e5a {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal"} -C3L-03272.WGS.T C3L-03272 LSCC WGS tumor CPT0225380006 CPT0225380006.WholeGenome.RP-1303.bam 57055313234 BAM aligned CPTAC3 ecc4960c-f567-42e1-83c6-31f7eaa413bc c1aefb4c0e92cc3714aad8bd7b7e4c9d {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor"} -C3L-03272.WGS.T.hg38 C3L-03272 LSCC WGS tumor CPT0225380006 8f3cb724-0fdf-4d28-ae78-bd024cc7ca04_wgs_gdc_realn.bam 82136878579 BAM harmonized CPTAC3 72f758cf-917a-4a95-b714-d422e6c58128 a3ce871691fa0df04223cf690ae92585 {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor"} -C3L-03272.WXS.A C3L-03272 LSCC WXS tissue_normal CPT0225470006 CPT0225470006.WholeExome.RP-1303.bam 17782765021 BAM aligned CPTAC3 e5b57549-aea7-4344-83e4-190d98896d77 2c01ffb0c88bc0529de2ae2ff1a5f9ab {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.WXS.A.hg38 C3L-03272 LSCC WXS tissue_normal CPT0225470006 78196cf9-b1f2-4012-845b-8b209e03266d_wxs_gdc_realn.bam 25034527970 BAM harmonized CPTAC3 3e72ebdb-d4f1-4684-a09a-b7574d6dd91e aef6f00e059396dca89c08218cae21a9 {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03272.WXS.N C3L-03272 LSCC WXS blood_normal CPT0226050002 CPT0226050002.WholeExome.RP-1303.bam 29679809774 BAM aligned CPTAC3 856ca94b-8300-41d8-994c-20c3eeca3e4c 50e437dfb615676617d7649ef03b2837 {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal"} -C3L-03272.WXS.N.hg38 C3L-03272 LSCC WXS blood_normal CPT0226050002 463e4a08-38ab-408f-ac18-8f6899380f8c_wxs_gdc_realn.bam 41000207872 BAM harmonized CPTAC3 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 98a48805103196244da62e5f7344276a {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal"} -C3L-03272.WXS.T C3L-03272 LSCC WXS tumor CPT0225380006 CPT0225380006.WholeExome.RP-1303.bam 17959482942 BAM aligned CPTAC3 a6d2bf7e-f2ed-40fa-b80f-53019e9ac4a7 0a15a2cda3703782c1fa88a7214c690e {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor"} -C3L-03272.WXS.T.hg38 C3L-03272 LSCC WXS tumor CPT0225380006 8f3cb724-0fdf-4d28-ae78-bd024cc7ca04_wxs_gdc_realn.bam 25283322306 BAM harmonized CPTAC3 caaab6de-d522-4508-aca4-9451506e9692 2bc702bcdee2a92d91755b1f3c7cbf7c {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor"} -C3L-03303.MethArray.Green.Tpb C3L-03303 AML Methylation_Array tumor_peripheral_blood CPT0414490002 205987780161_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3c746d14-c96f-46b0-b8ec-7150a30f73b4 eca82677fb3d862fb645c6562e2b54a8 {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.MethArray.Red.Tpb C3L-03303 AML Methylation_Array tumor_peripheral_blood CPT0414490002 205987780161_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 57a15697-2ae0-4f35-b7ab-c6391e499a95 7e38a4f29a54c8886316aa4a8251f56f {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.miRNA-Seq.S11_L003_R1.Tpb C3L-03303 AML miRNA-Seq tumor_peripheral_blood CPT0414520002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L003_R1_001.unaln.bam 282194409 BAM S11_L003_R1 unaligned CPTAC3 6e805926-0975-4c86-ae8b-e4665e79954d a3272b032c3685d07cf5a1b23420ba24 {"aliquot_tag": "ALQ_b9cd89b3", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.miRNA-Seq.Tpb.hg38 C3L-03303 AML miRNA-Seq tumor_peripheral_blood CPT0414520002 757e7d74-2d01-43bf-8f38-d063afe5a8b9_mirnaseq_gdc_realn.bam 310143403 BAM harmonized CPTAC3 24b38240-fcf1-4c27-884e-0ca158e542a5 6dae08189d500d1a1cc967679f8930fc {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.RNA-Seq.chimeric.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.chimeric.gdc_realn.bam 720730740 BAM chimeric harmonized CPTAC3 dfb307f3-ca94-4f41-b865-73d823cbb3ee 270e8ab24e9702f475cbe161e38ddc69 {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.RNA-Seq.genomic.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.genomic.gdc_realn.bam 8926090323 BAM genomic harmonized CPTAC3 d4a4eecb-56a8-4c25-9d8b-6210069b382b 3ec8c52cbc385ff8e5d8a77626390051 {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.RNA-Seq.S31_L008_R1.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R1_001.fastq.gz 4200665380 FASTQ S31_L008_R1 unaligned CPTAC3 50e07cc2-4c18-4b66-ad49-40c0ddb33156 b9d158f5e68292a564faf233b4f76051 {"aliquot_tag": "ALQ_b9cd89b3", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.RNA-Seq.S31_L008_R2.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R2_001.fastq.gz 4733354512 FASTQ S31_L008_R2 unaligned CPTAC3 676f819f-ab8a-4d67-b924-4ea85853f451 b2fc6c0ca1f4eb940fd6f169611e5085 {"aliquot_tag": "ALQ_b9cd89b3", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.RNA-Seq.transcriptome.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.transcriptome.gdc_realn.bam 9364830277 BAM transcriptome harmonized CPTAC3 0a642937-c5d7-4320-aed3-7a8db2d34f2c 2d40ed896698de8e3d98dba058416d26 {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.WGS.Nbc C3L-03303 AML WGS buccal_normal CPT0414470001 CPT0414470001.WholeGenome.RP-2158.bam 37979169924 BAM aligned CPTAC3 6b894c3e-cf42-49f4-a10a-876d5e5f9aca 7b082a3f310c055bc77d8286d5a8c58b {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03303.WGS.Nbc.hg38 C3L-03303 AML WGS buccal_normal CPT0414470001 60ad18a7-b6b0-4584-b7c8-9eb861605047_wgs_gdc_realn.bam 112880245115 BAM harmonized CPTAC3 5d5ffeab-8fde-4425-b4c2-709184c3574e 1f94d3e7b7422c98abe77f383df7bdad {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03303.WGS.Tpb C3L-03303 AML WGS tumor_peripheral_blood CPT0414490002 CPT0414490002.WholeGenome.RP-2158.bam 45890699294 BAM aligned CPTAC3 c26f61d4-c87f-48c3-bcfd-6fe29e929ef3 e5858cb207a1173ffe1d33afd2d6ee7d {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.WGS.Tpb.hg38 C3L-03303 AML WGS tumor_peripheral_blood CPT0414490002 c5b83617-a80e-4728-90dc-840cc19cda6a_wgs_gdc_realn.bam 133305371881 BAM harmonized CPTAC3 941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6 3ae224b734d259d6cede14bc5964c80d {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.WXS.Nbc C3L-03303 AML WXS buccal_normal CPT0414470001 CPT0414470001.WholeExome.RP-1303.bam 25664195896 BAM aligned CPTAC3 9dc9d029-df01-42cc-8500-766140a152ab 0e4653625660ff13719309528373ab57 {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03303.WXS.Nbc.hg38 C3L-03303 AML WXS buccal_normal CPT0414470001 60ad18a7-b6b0-4584-b7c8-9eb861605047_wxs_gdc_realn.bam 34925074666 BAM harmonized CPTAC3 709ebea2-6679-4120-bbc8-0f5a280cdb95 807ddedd9279fbd7aad4b25c7d88eb48 {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03303.WXS.Tpb C3L-03303 AML WXS tumor_peripheral_blood CPT0414490002 CPT0414490002.WholeExome.RP-1303.bam 24404684691 BAM aligned CPTAC3 26853a73-4452-4e19-957b-11d89263cd87 2d3222d682106f237398cc868bc91255 {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03303.WXS.Tpb.hg38 C3L-03303 AML WXS tumor_peripheral_blood CPT0414490002 c5b83617-a80e-4728-90dc-840cc19cda6a_wxs_gdc_realn.bam 33925470072 BAM harmonized CPTAC3 44aaaeb7-0526-4976-b170-77b2b1f02b45 40ed2bd25a30535bdc471d69f5d02386 {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-03308.MethArray.Green.Tbm C3L-03308 AML Methylation_Array tumor_bone_marrow CPT0201550002 203561450062_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0c11ab8a-4434-4fb3-ae62-f9b65ff88dbc f7c2642b13d9e6cba9527a1edde1f36f {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.MethArray.Red.Tbm C3L-03308 AML Methylation_Array tumor_bone_marrow CPT0201550002 203561450062_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 8727e07e-dbe8-46b6-94bf-3a4b1b0733ea f595cb8f6676e90c3e960acd67bfd576 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.miRNA-Seq.S30_L002_R1.Tbm C3L-03308 AML miRNA-Seq tumor_bone_marrow CPT0201560002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACCGG_S30_L002_R1_001.unaln.bam 135963073 BAM S30_L002_R1 unaligned CPTAC3 4eee79eb-a538-454e-8c77-f02952673c81 d624a64c348db950bd12aad76a8bfd13 {"aliquot_tag": "ALQ_a1c579c0", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.miRNA-Seq.Tbm.hg38 C3L-03308 AML miRNA-Seq tumor_bone_marrow CPT0201560002 b9d486cc-3fc5-4127-a3d6-ea2d68f0dc26_mirnaseq_gdc_realn.bam 150552262 BAM harmonized CPTAC3 e89d846c-336b-4890-8163-273e0fe05b81 b09c01ce756f891be3e837348a80cf2a {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.RNA-Seq.chimeric.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.chimeric.gdc_realn.bam 42592438 BAM chimeric harmonized CPTAC3 3a7fc045-c50c-4d21-a8c8-59098d75b815 5e7585e38d08c0246ce434ab1bc839a6 {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.RNA-Seq.genomic.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.genomic.gdc_realn.bam 8650664066 BAM genomic harmonized CPTAC3 b4fc4964-447d-4c92-b223-7b4122492ca9 35d29621034e6ce9d13ea1f7bd18b1dc {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.RNA-Seq.S1_L007_R1.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R1_001.fastq.gz 4245443481 FASTQ S1_L007_R1 unaligned CPTAC3 0e16aef5-04b8-4503-a905-e437485f08fa d408e26b84bd69e6ee2a63777abdb225 {"aliquot_tag": "ALQ_a1c579c0", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.RNA-Seq.S1_L007_R2.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R2_001.fastq.gz 4634091106 FASTQ S1_L007_R2 unaligned CPTAC3 67adf4d2-b1a4-45a3-b423-04aeeff6e2b4 7f8beacbba61c981e89afef002e592d4 {"aliquot_tag": "ALQ_a1c579c0", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.RNA-Seq.transcriptome.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.transcriptome.gdc_realn.bam 9642603748 BAM transcriptome harmonized CPTAC3 5fb87a64-20bb-419f-b162-940eb4768e62 06ff47cf2c379faca727a6246dd0cf82 {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002_1 CPT0201630002_1.WholeGenome.RP-1303.bam 68138136147 BAM aligned CPTAC3 bc8e886d-54bf-4641-accb-ebbf1ad63d9c 807e2c69cd4858371a6492c2c238e589 {"aliquot_tag": "ALQ_13b0c409", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002 CPT0201630002.WholeGenome.RP-1303.bam 24596099382 BAM aligned CPTAC3 85acc293-6c11-497e-8049-76327f5ec0b0 e0bb0b766ab2ef44625e416031dd9864 {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03308.WGS.Nbc.hg38 C3L-03308 AML WGS buccal_normal CPT0201630002_1 476f0761-cd64-4f7e-bad6-db1a1d997d02_wgs_gdc_realn.bam 95794248461 BAM harmonized CPTAC3 3f006696-9c85-46f6-80cb-a65dd4242e8f 595bbdab35a6b3ea7987bb2ba85d5d38 {"aliquot_tag": "ALQ_13b0c409", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03308.WGS.Nbc.hg38 C3L-03308 AML WGS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wgs_gdc_realn.bam 33707667964 BAM harmonized CPTAC3 443cebb5-a542-4866-9e67-df805b839012 45247c1120bcbd60c050145d4841a1bf {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002_1 CPT0201550002_1.WholeGenome.RP-1303.bam 80526632719 BAM aligned CPTAC3 45ce3ee1-1993-4b8b-a694-4c00f90d8c79 fd0e933949c6bc9b1f300317268d9e31 {"aliquot_tag": "ALQ_feeff6d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeGenome.RP-1303.bam 23177226613 BAM aligned CPTAC3 831dd319-1f30-4547-b465-65f33299a36c 7ed4ffb7d9bb11d532084d0efeaf558c {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.WGS.Tbm.hg38 C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wgs_gdc_realn.bam 32052472043 BAM harmonized CPTAC3 0853efaa-8886-4b5c-96ce-547b63abbc8f 2b6f623f6d8a4f0da4fa1ec56d040503 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.WGS.Tbm.hg38 C3L-03308 AML WGS tumor_bone_marrow CPT0201550002_1 73edd824-ca93-4839-a578-85e319e4b18c_wgs_gdc_realn.bam 117015182430 BAM harmonized CPTAC3 25391a83-7490-48ab-983b-d9df97c1b398 8ea94993ecee621d3feb238ed6a808a5 {"aliquot_tag": "ALQ_feeff6d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.WXS.Nbc C3L-03308 AML WXS buccal_normal CPT0201630002 CPT0201630002.WholeExome.RP-1303.bam 24596099450 BAM aligned CPTAC3 5c350146-7466-48a4-949f-f570df1aa3e1 1888a9762a880130611a0180727800d1 {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03308.WXS.Nbc.hg38 C3L-03308 AML WXS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wxs_gdc_realn.bam 33863986000 BAM harmonized CPTAC3 9ea0ec47-41c9-4b2e-badb-ccfd4979751a 54d599e0a52fac7f3ba86f66a57866be {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03308.WXS.Tbm C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeExome.RP-1303.bam 23177226677 BAM aligned CPTAC3 89398d58-6aff-4b44-aee1-b4a1be711054 8a7eae1f421b9e4cc549887e7d14af57 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03308.WXS.Tbm.hg38 C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wxs_gdc_realn.bam 32380906747 BAM harmonized CPTAC3 0d6b19e7-cafc-43e4-9401-37a8da579764 6f15826e0d25dcf5b08ceabcd7b20ae3 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03348.ANN_98be90a2.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.chimeric.gdc_realn.bam 314214514 BAM chimeric harmonized CPTAC3 6b6fb99f-3474-4615-b5f2-e3f4b5e55033 a73512ee60bff2b82e5beefb3871d4bf {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.ANN_98be90a2.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.genomic.gdc_realn.bam 9687156277 BAM genomic harmonized CPTAC3 dab4d8ce-dd55-4677-afe7-0027144af27f 0d3919e8c8865e726a8cb39a89614577 {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.ANN_98be90a2.RNA-Seq.S8_L007_R1.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R1_001.fastq.gz 4346927555 FASTQ S8_L007_R1 unaligned CPTAC3 cb4f0584-8ef0-4ed0-b10c-9b7e00aab287 27b9d71bb74d9cc28ef112766a28bf50 {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03348.ANN_98be90a2.RNA-Seq.S8_L007_R2.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R2_001.fastq.gz 4807680903 FASTQ S8_L007_R2 unaligned CPTAC3 39cef4d2-3d3c-4e64-b7c0-2ee3c22a2606 9defce0f036eacb880d54011a6c6f899 {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03348.ANN_98be90a2.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.transcriptome.gdc_realn.bam 12188193584 BAM transcriptome harmonized CPTAC3 9d3c5011-07c0-4bd0-b6d4-c267b3bd54b6 351c275d0c26486d943f67ca0e86dafe {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_4617bbc8.RNA-Seq.chimeric.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.chimeric.gdc_realn.bam 30087846 BAM chimeric harmonized CPTAC3 aaefad92-577e-43de-ab97-ac266ef1a04d 2f790faa1e970666f2779c7d645b398d {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03348.DUP_4617bbc8.RNA-Seq.genomic.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.genomic.gdc_realn.bam 10189903240 BAM genomic harmonized CPTAC3 76bfe873-357b-4979-893d-a1b70718f0e2 4fa177ead115afdb1f61b53cddfdf566 {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03348.DUP_4617bbc8.RNA-Seq.S1_L001_R1.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 3568113260 FASTQ S1_L001_R1 unaligned CPTAC3 12e19f35-3916-421f-bfe4-db8e45c480cc aa30e5444d6bacf1b607a28852a8f28e {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03348.DUP_4617bbc8.RNA-Seq.S1_L001_R2.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 3989549862 FASTQ S1_L001_R2 unaligned CPTAC3 0c7bd6f6-18ea-46d7-9aaf-49c340317959 6fd92c331911070fd11ef1d3482449cc {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03348.DUP_4617bbc8.RNA-Seq.transcriptome.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.transcriptome.gdc_realn.bam 9036536267 BAM transcriptome harmonized CPTAC3 e677e8ed-2640-4c44-9181-026a5026fb36 9197c5e3271667baf3223b98c28dac01 {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03348.DUP_505ac1bb.WXS.N C3L-03348 PDA WXS blood_normal CPT0167070002 CPT0167070002.WholeExome.RP-1303.bam 42037102862 BAM aligned CPTAC3 176e20b6-b16a-497e-b32c-1154a654b0b7 8ae0ca31e853bfba68491662cbf26235 {"aliquot_tag": "DUP_505ac1bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-03348.DUP_505ac1bb.WXS.N.hg38 C3L-03348 PDA WXS blood_normal CPT0167070002 6d3fd32e-c0cb-4a4f-818b-b3d74b39567f_wxs_gdc_realn.bam 58398956401 BAM harmonized CPTAC3 b3a30b22-91ff-4ed5-a5f4-06a07d5353bc f343803c11ac5c4b12c44223f701b7a5 {"aliquot_tag": "DUP_505ac1bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-03348.DUP_76b0f18e.WXS.T C3L-03348 PDA WXS tumor CPT0167050033 CPT0167050033.WholeExome.RP-1303.bam 23213012681 BAM aligned CPTAC3 4839a720-851b-4bfe-bd3f-a1e5f4ee78ef 6ee483cdcd638e6a4d1c26a12623371c {"aliquot_tag": "DUP_76b0f18e", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_76b0f18e.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050033 9dcf8cb9-1927-4b2b-a6aa-84971c658db7_wxs_gdc_realn.bam 32971728513 BAM harmonized CPTAC3 9b9d6e4e-7609-4a76-bd56-2dba820b91d5 5bc2f670e4be81f8fdc5c3533fc03538 {"aliquot_tag": "DUP_76b0f18e", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_9fd354bb.WXS.T C3L-03348 PDA WXS tumor CPT0167050035 CPT0167050035.WholeExome.RP-1303.bam 38199389522 BAM aligned CPTAC3 a3063468-775a-4305-b9b2-7f32355d351d 39e019269fe43b06d4ee37fa19223ccd {"aliquot_tag": "DUP_9fd354bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_9fd354bb.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050035 fc5be7e1-d584-45b2-bfad-1cfd971ca4ec_wxs_gdc_realn.bam 52677237299 BAM harmonized CPTAC3 a5a5ff62-5ea9-404c-a530-7e15987c1b52 a1aa493fef2f9bb725c65ddca6c699d6 {"aliquot_tag": "DUP_9fd354bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_a0f836f3.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.chimeric.gdc_realn.bam 271117993 BAM chimeric harmonized CPTAC3 7ae20b2f-47bf-47f7-9c7e-31b3cdab0c5f 0a5d7745993a76a743c8f3881173dc94 {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_a0f836f3.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.genomic.gdc_realn.bam 6502771481 BAM genomic harmonized CPTAC3 34daf20b-480f-4f17-bc58-b79bdee6d469 13f771d101a2c46058b4ccae488aef4a {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_a0f836f3.RNA-Seq.S27_L008_R1.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R1_001.fastq.gz 2992954750 FASTQ S27_L008_R1 unaligned CPTAC3 fbaddd20-86dc-4864-9ba7-d0b93036a1d4 19cfcf6a992b1508362b8b8807a908c8 {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_a0f836f3.RNA-Seq.S27_L008_R2.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R2_001.fastq.gz 3352630699 FASTQ S27_L008_R2 unaligned CPTAC3 66ed3b74-efd6-42d6-a8aa-f5d62759b401 5100684c30b121dd2b849d7f139a575c {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S27", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_a0f836f3.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.transcriptome.gdc_realn.bam 8151666680 BAM transcriptome harmonized CPTAC3 b9089b07-9681-4d4c-8a3f-a12482936c05 76d24eff6e6dc4b1010c2225b67eb2ee {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_e8d4642d.WXS.T C3L-03348 PDA WXS tumor CPT0167050034 CPT0167050034.WholeExome.RP-1303.bam 22428025682 BAM aligned CPTAC3 995d7f4a-5260-4a37-9210-8b3a0357fc9a c697b24c93cbebdcf73f3b7b7a34350a {"aliquot_tag": "DUP_e8d4642d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03348.DUP_e8d4642d.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050034 0a27616d-0796-4609-ad59-2448a75d7749_wxs_gdc_realn.bam 31087045292 BAM harmonized CPTAC3 e5bd8d9b-8c06-4f9a-a17c-5659a79c6d5f 2c76f026d8a65618bb13caa0ea7b3ecb {"aliquot_tag": "DUP_e8d4642d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03350.MethArray.Green.T C3L-03350 PDA Methylation_Array tumor CPT0198310008 203561450030_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a85a8a13-e047-4e86-94c8-3f070d40971b beac862c52e72f57a01d02dc3b9004ff {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03350.MethArray.Red.T C3L-03350 PDA Methylation_Array tumor CPT0198310008 203561450030_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 94a4729b-2548-408c-acfd-e21b6676634f 092da6eaa4d523f244241b553a76d214 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03350.miRNA-Seq.S39_L005_R1.T C3L-03350 PDA miRNA-Seq tumor CPT0198310011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCGTCC_S39_L005_R1_001.unaln.bam 244660424 BAM S39_L005_R1 unaligned CPTAC3 d9497292-ce88-4a2c-ba01-cb532316352c e8c04c64348f5721b579ce52a468d901 {"aliquot_tag": "ALQ_f6f4440b", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03350.miRNA-Seq.T.hg38 C3L-03350 PDA miRNA-Seq tumor CPT0198310011 fc78ccbd-64ea-448f-9389-7e4fe7ef4b6b_mirnaseq_gdc_realn.bam 281234811 BAM harmonized CPTAC3 fad10a93-c712-44fa-8e7d-475ab01ee09d 90a2eddbe50b5ba6d70bb063141264db {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor"} -C3L-03350.RNA-Seq.chimeric.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.chimeric.gdc_realn.bam 35252484 BAM chimeric harmonized CPTAC3 37a91e76-bd49-4e63-b0c0-dcfccf5b28f7 bb987273262b46e5dc9f5f981f8d63ee {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor"} -C3L-03350.RNA-Seq.genomic.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.genomic.gdc_realn.bam 8279102681 BAM genomic harmonized CPTAC3 6215728e-8b41-4cf0-ae80-9bf84b064202 915feb6dff88b0d13b087ec010d6db63 {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor"} -C3L-03350.RNA-Seq.S19_L005_R1.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R1_001.fastq.gz 3882319565 FASTQ S19_L005_R1 unaligned CPTAC3 3a223270-44f3-44c0-aef3-1cd3b7d84f4a 6bcde7b5e4a4b9af21856a85c06c742f {"aliquot_tag": "ALQ_f6f4440b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03350.RNA-Seq.S19_L005_R2.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R2_001.fastq.gz 4167422484 FASTQ S19_L005_R2 unaligned CPTAC3 e6e786ba-07df-4f1d-afe3-a24537a37c89 54343d6e47c6c6c0daab87da9f020355 {"aliquot_tag": "ALQ_f6f4440b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03350.RNA-Seq.transcriptome.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.transcriptome.gdc_realn.bam 11300823154 BAM transcriptome harmonized CPTAC3 dae9b03d-e405-4a32-a764-dc205f946580 586728c4b22249417a2a0b7541df3517 {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor"} -C3L-03350.Targeted.T C3L-03350 PDA Targeted_Sequencing tumor CPT0198310008 CPT0198310008.CustomSelection.RP-1303.PDO-18786.bam 4431220616 BAM aligned CPTAC3 b42c6b7f-1d74-404e-942d-0e4965e6c37b dba41d9f5ac240be6a1a036c67904416 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03350.Targeted.T.hg38 C3L-03350 PDA Targeted_Sequencing tumor CPT0198310008 8441a514-b64c-438e-8146-28af1c73ee54_targetedsequencing_gdc_realn.bam 6163044828 BAM harmonized CPTAC3 2db0d00d-6a5a-402c-89d3-3b0995b26747 18d656df8f049a92c4adbc9ad65a1eec {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03350.WGS.N C3L-03350 PDA WGS blood_normal CPT0198350002 CPT0198350002.WholeGenome.RP-1303.bam 67492712507 BAM aligned CPTAC3 4d22e85c-cf4a-410a-b570-8cafab308714 c0a95560ae1e10fa469a2ba35923e335 {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal"} -C3L-03350.WGS.N.hg38 C3L-03350 PDA WGS blood_normal CPT0198350002 76d3caa1-56dc-481e-9d3e-e2a8c353c855_wgs_gdc_realn.bam 99427085983 BAM harmonized CPTAC3 3aff18dc-c927-4f39-a5f2-e43fbc2a92e8 980c47d4fabec29389a99a1dcab42ace {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal"} -C3L-03350.WGS.T C3L-03350 PDA WGS tumor CPT0198310008 CPT0198310008.WholeGenome.RP-1303.bam 69396914313 BAM aligned CPTAC3 4b1a6024-c740-411f-8614-faae88fc71ec 02b4cebffd5369424f1a49682507ce9a {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03350.WGS.T.hg38 C3L-03350 PDA WGS tumor CPT0198310008 8441a514-b64c-438e-8146-28af1c73ee54_wgs_gdc_realn.bam 100091921537 BAM harmonized CPTAC3 3ba0ce7c-be58-4b50-a682-a89f95bc13b0 a294b1dfe5dcb70fadd7479d1ea85ae0 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03350.WXS.N C3L-03350 PDA WXS blood_normal CPT0198350002 CPT0198350002.WholeExome.RP-1303.bam 28383794554 BAM aligned CPTAC3 8f607e56-b056-4b56-ab64-73522b5d7a1f 72873d529912da538008ce3504d825cd {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal"} -C3L-03350.WXS.N.hg38 C3L-03350 PDA WXS blood_normal CPT0198350002 76d3caa1-56dc-481e-9d3e-e2a8c353c855_wxs_gdc_realn.bam 39267006450 BAM harmonized CPTAC3 38d08b68-04e5-4802-b62c-a26145674d96 7a8d67dc5f943d415c099be37ed95bad {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal"} -C3L-03350.WXS.T C3L-03350 PDA WXS tumor CPT0198310008 CPT0198310008.WholeExome.RP-1303.bam 49094698803 BAM aligned CPTAC3 db23e593-37dd-493f-9a0f-bbfe7f7ea7dd 2fc1aeacaff3371845bd8552e9b359d4 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03350.WXS.T.hg38 C3L-03350 PDA WXS tumor CPT0198310008 8441a514-b64c-438e-8146-28af1c73ee54_wxs_gdc_realn.bam 68278406501 BAM harmonized CPTAC3 311baec2-6f46-4bca-b63b-f8f1a3863c25 c8fa66047627d64d34fcd0ddba22e41f {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor"} -C3L-03356.MethArray.Green.T C3L-03356 PDA Methylation_Array tumor CPT0198420007 203561620012_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 1d564805-865f-4612-8382-55adcbab274a 2596dda0a925c54453c0d8c94b32f661 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03356.MethArray.Red.T C3L-03356 PDA Methylation_Array tumor CPT0198420007 203561620012_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 e3860c22-14b1-4407-92b3-379ed46c4420 bb0fd9136460ff4e5ff8e4ac297b56e3 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03356.miRNA-Seq.S10_L006_R1.T C3L-03356 PDA miRNA-Seq tumor CPT0198420010 190712_UNC32-K00270_0192_BH7HL3BBXY_CATGGC_S10_L006_R1_001.unaln.bam 227806433 BAM S10_L006_R1 unaligned CPTAC3 217fe8a7-3227-4ac7-83c4-62c5f36f5b7d 9d01efb7730ef62eb462fd4241d22f04 {"aliquot_tag": "ALQ_db563ef5", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03356.miRNA-Seq.T.hg38 C3L-03356 PDA miRNA-Seq tumor CPT0198420010 846740a0-48f8-4822-bcdc-2b62f28664d2_mirnaseq_gdc_realn.bam 258004433 BAM harmonized CPTAC3 755a44a2-1732-41f8-abd3-89159bf4a3c7 ba38a2f584b9df0c4711b9da0a96b4fa {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor"} -C3L-03356.RNA-Seq.chimeric.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.chimeric.gdc_realn.bam 35953010 BAM chimeric harmonized CPTAC3 0dc9f069-c393-496c-9db6-2b3567ac48cf e1d08f2aab93c39fc0149c049786ac93 {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor"} -C3L-03356.RNA-Seq.genomic.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.genomic.gdc_realn.bam 9816391837 BAM genomic harmonized CPTAC3 522d9365-bc84-43d8-9f69-bb1d2da1a6a6 0662928ff167a4485716ee4bee21cd7b {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor"} -C3L-03356.RNA-Seq.S17_L005_R1.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R1_001.fastq.gz 3882088996 FASTQ S17_L005_R1 unaligned CPTAC3 61fa646e-a7db-4be2-ab3b-b05b21b48ff5 2de02dd11aa199084bf988d716ba5b1c {"aliquot_tag": "ALQ_db563ef5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03356.RNA-Seq.S17_L005_R2.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R2_001.fastq.gz 4322512693 FASTQ S17_L005_R2 unaligned CPTAC3 17eeac41-1327-4e26-92fb-5cb9cdb96767 497ce561237c59eaf36116d37b5a55f3 {"aliquot_tag": "ALQ_db563ef5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03356.RNA-Seq.transcriptome.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.transcriptome.gdc_realn.bam 10203055148 BAM transcriptome harmonized CPTAC3 ecbdf753-7924-4234-b871-6d43d5f401cf ce1b1803346192f5ff26d321390fe74b {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor"} -C3L-03356.Targeted.T C3L-03356 PDA Targeted_Sequencing tumor CPT0198420007 CPT0198420007.CustomSelection.RP-1303.PDO-18786.bam 4929898503 BAM aligned CPTAC3 283e4bbf-dec3-4a93-bb4a-e4da0f4efef6 a114c0904e997ef13dcdc7535e663d5d {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03356.Targeted.T.hg38 C3L-03356 PDA Targeted_Sequencing tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_targetedsequencing_gdc_realn.bam 6819961395 BAM harmonized CPTAC3 25e0612e-1358-47fe-8c64-08dbf12b181c 30baca96cac77780850a7aabe56a1262 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03356.WGS.N C3L-03356 PDA WGS blood_normal CPT0198450002 CPT0198450002.WholeGenome.RP-1303.bam 91211340238 BAM aligned CPTAC3 9a59fb24-bddf-4700-8fb1-48b3aee686e2 2a1cb96d18571d35c19ca12fac7ae117 {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal"} -C3L-03356.WGS.N.hg38 C3L-03356 PDA WGS blood_normal CPT0198450002 78376e37-140d-4c03-a35f-64b8ec950598_wgs_gdc_realn.bam 131693963521 BAM harmonized CPTAC3 4197a5e2-b184-43c5-a01d-01f22cf89d7c 4f35b2f2913a3f4e4122a19417c78712 {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal"} -C3L-03356.WGS.T C3L-03356 PDA WGS tumor CPT0198420007 CPT0198420007.WholeGenome.RP-1303.bam 74897861080 BAM aligned CPTAC3 31c77bb2-e61b-48de-97a7-daed3ee1b077 0b3c19d047777df4db93d3e512b81a26 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03356.WGS.T.hg38 C3L-03356 PDA WGS tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_wgs_gdc_realn.bam 108796153572 BAM harmonized CPTAC3 2e61e2f8-19c0-46b4-b4d0-226140c1589c 140f6cacaebebe69ca383da3f6c88443 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03356.WXS.N C3L-03356 PDA WXS blood_normal CPT0198450002 CPT0198450002.WholeExome.RP-1303.bam 20676925668 BAM aligned CPTAC3 76c499d6-ce07-45d7-848e-dbb5a525c038 29f1a410b5802a8e5c5f8602a85abf6a {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal"} -C3L-03356.WXS.N.hg38 C3L-03356 PDA WXS blood_normal CPT0198450002 78376e37-140d-4c03-a35f-64b8ec950598_wxs_gdc_realn.bam 28372322137 BAM harmonized CPTAC3 bf6fe2a5-f454-42ea-93d0-d11496684867 075810bb6a5b34b093708b0b45362126 {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal"} -C3L-03356.WXS.T C3L-03356 PDA WXS tumor CPT0198420007 CPT0198420007.WholeExome.RP-1303.bam 55677693404 BAM aligned CPTAC3 6a9c3d44-a585-46df-a16a-7e5908ac5866 47054d87506eeb8f143645e8946879c6 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03356.WXS.T.hg38 C3L-03356 PDA WXS tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_wxs_gdc_realn.bam 77207880644 BAM harmonized CPTAC3 a0bb9942-5291-4181-a01d-2cdd31ee6c8b 2bcd08ba2a12dd5eec3cfc317c2b74b1 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor"} -C3L-03371.MethArray.Green.A C3L-03371 PDA Methylation_Array tissue_normal CPT0275880006 203561620086_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 7a042bdb-d1bf-41ab-8fca-ed336cbb2974 e08e698690f1c4451d4ed22d7dc078db {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03371.MethArray.Green.T C3L-03371 PDA Methylation_Array tumor CPT0275870006 203561450018_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e14cb9cd-570c-4145-ae3f-02f9f0981332 842cda824b92d0f0a7fdce2b92794083 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03371.MethArray.Red.A C3L-03371 PDA Methylation_Array tissue_normal CPT0275880006 203561620086_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 e4bb1a5d-7db1-4b58-96fa-6bc7ca72575a 0b5139a6bee5557fa7be9e062bbc4d43 {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03371.MethArray.Red.T C3L-03371 PDA Methylation_Array tumor CPT0275870006 203561450018_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 23424878-3656-4d50-8361-b6f88e81942b e452be7b0af4b5c7745de6b5c2d06219 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03371.miRNA-Seq.S22_L004_R1.T C3L-03371 PDA miRNA-Seq tumor CPT0275870009 190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L004_R1_001.unaln.bam 156803811 BAM S22_L004_R1 unaligned CPTAC3 0e11e966-7771-4ce3-8a9c-80bc3b19c239 7865436f5d1ac7d33a457311ea51e864 {"aliquot_tag": "ALQ_4963b72c", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03371.miRNA-Seq.T.hg38 C3L-03371 PDA miRNA-Seq tumor CPT0275870009 dfd78d92-4529-431f-a8a4-7b0c090372ae_mirnaseq_gdc_realn.bam 179976957 BAM harmonized CPTAC3 1bf25f0d-7fb8-4e04-8fb6-4c0b7efbdaef 466308e3521fcf84c3aaa8d04065a228 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor"} -C3L-03371.RNA-Seq.chimeric.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.chimeric.gdc_realn.bam 31603216 BAM chimeric harmonized CPTAC3 dcb3dbec-2fd3-48bf-bcd7-fa344845a9a4 d29f4861ae2e36d09eee8798dc3d5066 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor"} -C3L-03371.RNA-Seq.genomic.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.genomic.gdc_realn.bam 10245837803 BAM genomic harmonized CPTAC3 ac471a62-3235-4e66-a93a-4ba3994d24ab 96a143859c28878c892adaf411079676 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor"} -C3L-03371.RNA-Seq.S1_L001_R1.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4782218516 FASTQ S1_L001_R1 unaligned CPTAC3 1634a736-f999-4d14-a5b9-941444523601 797adfb3b06fe28d583a79dce45737d4 {"aliquot_tag": "ALQ_4963b72c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03371.RNA-Seq.S1_L001_R2.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4852328372 FASTQ S1_L001_R2 unaligned CPTAC3 bc8d50f6-1a81-48ff-ab5b-d72e57adc1f1 21399213865e4c07ad112069768f7d0d {"aliquot_tag": "ALQ_4963b72c", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03371.RNA-Seq.transcriptome.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.transcriptome.gdc_realn.bam 12867195399 BAM transcriptome harmonized CPTAC3 50970b7a-945e-4e82-9908-e0114058742e 6585c53408053fbe97b856625ed3b583 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor"} -C3L-03371.Targeted.T C3L-03371 PDA Targeted_Sequencing tumor CPT0275870006 CPT0275870006.CustomSelection.RP-1303.PDO-18786.bam 4963174450 BAM aligned CPTAC3 2fc35e3d-48ee-4577-9271-160008a0ddea 253eb8b670180c0c1d8d292886143af4 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03371.Targeted.T.hg38 C3L-03371 PDA Targeted_Sequencing tumor CPT0275870006 b64d6b49-8c91-43e1-b52a-e7d2e32de154_targetedsequencing_gdc_realn.bam 6849606441 BAM harmonized CPTAC3 531f0389-de5e-43f5-b0f3-204418ca8aab a3bf76253e6a682f14aa873858ff8d89 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03371.WGS.N C3L-03371 PDA WGS blood_normal CPT0265930002 CPT0265930002.WholeGenome.RP-1303.bam 70737566167 BAM aligned CPTAC3 bf797d5a-dcaa-4f65-9982-21de3dbee21b 001fe70ed85a1f5e7e1b25d44f219fd7 {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03371.WGS.N.hg38 C3L-03371 PDA WGS blood_normal CPT0265930002 68092066-8b82-4104-9a20-01103abbd08a_wgs_gdc_realn.bam 102254369105 BAM harmonized CPTAC3 22a83bb6-f6e0-4361-9611-85cbaee303fc 59477f10a6cdba654bd95861f30807fc {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03371.WGS.T C3L-03371 PDA WGS tumor CPT0275870006 CPT0275870006.WholeGenome.RP-1303.bam 81844901089 BAM aligned CPTAC3 4118b328-0458-47c0-86ea-c2789d76f1af 4992d3c4708445f9e92ab7e9e02547cd {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03371.WGS.T.hg38 C3L-03371 PDA WGS tumor CPT0275870006 b64d6b49-8c91-43e1-b52a-e7d2e32de154_wgs_gdc_realn.bam 118504876173 BAM harmonized CPTAC3 9603db94-919d-440d-8ffb-6282a3504957 c0fd7216bed4a8166d0b037a527c9cf4 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03371.WXS.A C3L-03371 PDA WXS tissue_normal CPT0275880006 CPT0275880006.WholeExome.RP-1303.bam 23591291666 BAM aligned CPTAC3 7f278d35-a97e-4997-8b3a-7b490723b81d e101c14adff000b13075bf5fa8fab953 {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03371.WXS.A.hg38 C3L-03371 PDA WXS tissue_normal CPT0275880006 91cf837b-b73b-4153-9bc6-69ee9877d246_wxs_gdc_realn.bam 31957128517 BAM harmonized CPTAC3 86c9a7a0-9608-46e8-8961-24e1d333451a fadd78fafa2bae48a608de875aa4034b {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03371.WXS.N C3L-03371 PDA WXS blood_normal CPT0265930002 CPT0265930002.WholeExome.RP-1303.bam 25382175515 BAM aligned CPTAC3 c3321f0e-0310-4381-b6fd-edb8ca0af05a 1852ab90ca3bbc7b32734f4280d93286 {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03371.WXS.N.hg38 C3L-03371 PDA WXS blood_normal CPT0265930002 68092066-8b82-4104-9a20-01103abbd08a_wxs_gdc_realn.bam 34800455975 BAM harmonized CPTAC3 811aeff5-1757-4b26-9ce3-55361cd92d7c a0917d56b8d338380563589b9d306305 {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03371.WXS.T C3L-03371 PDA WXS tumor CPT0275870006 CPT0275870006.WholeExome.RP-1303.bam 64268613061 BAM aligned CPTAC3 19ff0cac-9774-44d8-b169-bf7ca85ad0b6 efc4fe2d709890f795fd2596f3b9d268 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03371.WXS.T.hg38 C3L-03371 PDA WXS tumor CPT0275870006 b64d6b49-8c91-43e1-b52a-e7d2e32de154_wxs_gdc_realn.bam 89603044939 BAM harmonized CPTAC3 68bbd142-3ff9-4d21-9ef9-cbe7e2a3128e 1b2368a087f39ee9eaef338456c7101a {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor"} -C3L-03372.MethArray.Green.T C3L-03372 GBM Methylation_Array tumor CPT0275960006 204367490151_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 e714040a-6402-4235-8292-63a0077c85c2 a8c7973335fcf6bff8a1c4932d58af0e {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor"} -C3L-03372.MethArray.Red.T C3L-03372 GBM Methylation_Array tumor CPT0275960006 204367490151_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 17e7d89a-fd06-4bbb-a052-1c0b3e40daa6 23f82e1c55875aef2fbb1391b678d076 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor"} -C3L-03372.miRNA-Seq.S39_L002_R1.T C3L-03372 GBM miRNA-Seq tumor CPT0275960009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 252595654 BAM S39_L002_R1 unaligned CPTAC3 3791b8ee-e0dc-4638-bb42-2f3763171e50 faaa0479a28cd0a70b8f588d2565196e {"aliquot_tag": "ALQ_bf5f4d39", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03372.miRNA-Seq.T.hg38 C3L-03372 GBM miRNA-Seq tumor CPT0275960009 dc89a039-334e-4161-bf3c-fb08ce3dd668_mirnaseq_gdc_realn.bam 282560822 BAM harmonized CPTAC3 e97614e1-f3b1-4cdd-a1b0-a63d474ba783 45f7d02d9b7e385c8bb305bc972d44a7 {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor"} -C3L-03372.RNA-Seq.chimeric.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.chimeric.gdc_realn.bam 410409829 BAM chimeric harmonized CPTAC3 a8ea80f4-824b-4855-98c5-0a406183e098 b441e8850f8b00abed1dfabd0be8b46c {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor"} -C3L-03372.RNA-Seq.genomic.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.genomic.gdc_realn.bam 7859272855 BAM genomic harmonized CPTAC3 e407f1d2-fd4c-4858-8b16-f5f3c716e2f9 88e5f15b887b8dd9e7cbf33d90e4acd6 {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor"} -C3L-03372.RNA-Seq.S7_L002_R1.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R1_001.fastq.gz 3400877684 FASTQ S7_L002_R1 unaligned CPTAC3 8109363c-1835-4a99-92e2-e83b25a6b90f 94383d7fc37e6af11f3fb4ac899ce35d {"aliquot_tag": "ALQ_bf5f4d39", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03372.RNA-Seq.S7_L002_R2.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ S7_L002_R2 unaligned CPTAC3 650b80e4-de52-493d-98b9-8ba98fbf901b 5b6ef1a8229a5a1fcb8ca0eff1ec47c0 {"aliquot_tag": "ALQ_bf5f4d39", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03372.RNA-Seq.transcriptome.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.transcriptome.gdc_realn.bam 6919499908 BAM transcriptome harmonized CPTAC3 63570d1d-15f0-4468-af26-b69122d353ac e48fa1933d6c8e07f131f6666674c50f {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor"} -C3L-03372.WGS.N C3L-03372 GBM WGS blood_normal CPT0265940002 CPT0265940002.WholeGenome.RP-2158.bam 30822237663 BAM aligned CPTAC3 31a89f6d-8060-4ffa-b67c-ee7de92e385b 1fdd13b9a447363b79781da3cf237559 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03372.WGS.N.hg38 C3L-03372 GBM WGS blood_normal CPT0265940002 69294b54-61df-4d78-a0da-7e5f1420368c_wgs_gdc_realn.bam 90435302917 BAM harmonized CPTAC3 e93293ef-83a7-4e72-8e5d-632a9ae6fb51 b9de531a0dc0c01ebe82d3e294c10f60 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03372.WGS.T C3L-03372 GBM WGS tumor CPT0275960006 CPT0275960006.WholeGenome.RP-2158.bam 21511353026 BAM aligned CPTAC3 3768276d-ccd5-42ab-a4ed-ef40990aa5b0 bcef20db68bb6f428a67c53357ef354f {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor"} -C3L-03372.WGS.T.hg38 C3L-03372 GBM WGS tumor CPT0275960006 0f606cd0-59c7-4da4-be52-58226d2b3cd5_wgs_gdc_realn.bam 62585754770 BAM harmonized CPTAC3 4fe1828b-c264-4376-b62e-0625433cb229 78f0ad18479f315900a7904c4f0c5479 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor"} -C3L-03372.WXS.N C3L-03372 GBM WXS blood_normal CPT0265940002 CPT0265940002.WholeExome.RP-1303.bam 21429808831 BAM aligned CPTAC3 5a23c514-da2a-4366-bd23-dd31907fbc9f 7b1771feaaa492922b1b87362df611f6 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03372.WXS.N.hg38 C3L-03372 GBM WXS blood_normal CPT0265940002 69294b54-61df-4d78-a0da-7e5f1420368c_wxs_gdc_realn.bam 29617153769 BAM harmonized CPTAC3 232df735-b856-4f31-840a-0e28d746748a 136569dab8570fd707f335939ea98076 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03372.WXS.T C3L-03372 GBM WXS tumor CPT0275960006 CPT0275960006.WholeExome.RP-1303.bam 20594156903 BAM aligned CPTAC3 7ffb97bc-1694-49bb-aa91-9bdccd83d539 199d2579fa9baadd047e8b72a7488b61 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor"} -C3L-03372.WXS.T.hg38 C3L-03372 GBM WXS tumor CPT0275960006 0f606cd0-59c7-4da4-be52-58226d2b3cd5_wxs_gdc_realn.bam 29792319485 BAM harmonized CPTAC3 0dd34017-3bea-4078-bfb6-359d08615f12 198bfc39e983233ae7667b9264d80326 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor"} -C3L-03378.MethArray.Green.A C3L-03378 HNSCC Methylation_Array tissue_normal CPT0199890006 203219650047_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8c8121bd-3054-4f6e-96b2-308969eef29b c9e7e8a6d51f28c36f824b900ac9f415 {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.MethArray.Green.T C3L-03378 HNSCC Methylation_Array tumor CPT0199880006 203271740119_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e0486f30-6012-4751-ae3d-87e7c4be7cb7 e9486658a8113b21cd271b32665c008f {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor"} -C3L-03378.MethArray.Red.A C3L-03378 HNSCC Methylation_Array tissue_normal CPT0199890006 203219650047_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 d7dd3702-b506-4b4f-9822-aeb1d9fed0b8 2364a3ab8d1ea1d9bf008cf8165ab45c {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.MethArray.Red.T C3L-03378 HNSCC Methylation_Array tumor CPT0199880006 203271740119_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 c572d87d-686c-43fb-bf16-2f5ecc295b9b c7432e15892d100ef0176fae2603f411 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor"} -C3L-03378.miRNA-Seq.A.hg38 C3L-03378 HNSCC miRNA-Seq tissue_normal CPT0199890009 81649f37-c710-4f6a-9249-025429acb7ba_mirnaseq_gdc_realn.bam 305229832 BAM harmonized CPTAC3 bb8f64f2-2b37-4c4b-96c7-745f06f4e7bd 90497d0439914145717a193607be7f3c {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.miRNA-Seq.S15_L003_R1.A C3L-03378 HNSCC miRNA-Seq tissue_normal CPT0199890009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGTCA_S15_L003_R1_001.unaln.bam 263997157 BAM S15_L003_R1 unaligned CPTAC3 0fcba505-c6cd-4e44-a01e-05da3d983a8b 87f85d8b27896ec0204f467d11c5155a {"aliquot_tag": "ALQ_1df44dce", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.miRNA-Seq.S6_L003_R1.T C3L-03378 HNSCC miRNA-Seq tumor CPT0199880009 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L003_R1_001.unaln.bam 256072638 BAM S6_L003_R1 unaligned CPTAC3 c0d3ad5e-497b-4026-9ef7-414f21fdee54 981f6ae8be14f8e9e1a6304b53ce2a89 {"aliquot_tag": "ALQ_2094647e", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03378.miRNA-Seq.T.hg38 C3L-03378 HNSCC miRNA-Seq tumor CPT0199880009 dcac4fc8-3962-4e14-b7fe-e25626b06dde_mirnaseq_gdc_realn.bam 289395161 BAM harmonized CPTAC3 eadbf333-f492-41dc-a929-fd8b3eb6c8e4 e8a83ca6e7bc5209954e886e775e271d {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.chimeric.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.chimeric.gdc_realn.bam 137926568 BAM chimeric harmonized CPTAC3 82abc197-7bb1-4c4e-92aa-aea484364be6 0f8123414e340ce02a711073406c1258 {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.RNA-Seq.chimeric.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.chimeric.gdc_realn.bam 264090627 BAM chimeric harmonized CPTAC3 3a601666-7ddf-46de-85c0-babe6034e0e6 73ceb246293386f6258a30f37885ef45 {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.chimeric.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.chimeric.gdc_realn.bam 238085521 BAM chimeric harmonized CPTAC3 ca0c6734-4a7d-4cfb-9fed-636724739890 6f662d299f58c3454862dc23eb2b54b3 {"aliquot_tag": "ALQ_cc784569", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.genomic.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.genomic.gdc_realn.bam 7521311927 BAM genomic harmonized CPTAC3 f5a05ceb-2d3f-4615-bee9-9a813a169d05 1f9291d304bcf8baa0cfe0c37be8bcb4 {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.RNA-Seq.genomic.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.genomic.gdc_realn.bam 10030347473 BAM genomic harmonized CPTAC3 1f4977ec-64f0-4a98-bcdb-052aa3657417 bb022fb2aa6f7125afa25acddc8628ce {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.genomic.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.genomic.gdc_realn.bam 11790346560 BAM genomic harmonized CPTAC3 c3e37fa1-981c-4420-8c97-6ae28634aafd a04357c2205b40f6d19c1eed4821ee3b {"aliquot_tag": "ALQ_cc784569", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.S1_L007_R1.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 3654791322 FASTQ S1_L007_R1 unaligned CPTAC3 77b18098-8d38-4e5e-8131-07fb0109099f 7db9f6241c05f26b88dffa23658a8826 {"aliquot_tag": "ALQ_1df44dce", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.RNA-Seq.S1_L007_R2.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 4035185144 FASTQ S1_L007_R2 unaligned CPTAC3 e4dd11db-f583-4498-ba79-381e045765a7 403a6cf11fb668cc757feb0aa4a07ebd {"aliquot_tag": "ALQ_1df44dce", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.RNA-Seq.S4_L001_R1.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R1_001.fastq.gz 4777250256 FASTQ S4_L001_R1 unaligned CPTAC3 5290e03c-be2a-45ea-80b4-776a5ce1ce2f c49de7e8b17397e03cc32f53bc029192 {"aliquot_tag": "ALQ_2094647e", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.S4_L001_R2.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R2_001.fastq.gz 5384513755 FASTQ S4_L001_R2 unaligned CPTAC3 61f672cd-e63d-4e8d-b501-ea42b0e04989 ffebd97ff87693df09f0e9a2ef22c6a0 {"aliquot_tag": "ALQ_2094647e", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.S85_R1.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R1_001.fastq.gz 6737442394 FASTQ S85_R1 unaligned CPTAC3 2e149408-a843-40d0-9aa8-9ecd461a1e30 22f7b1b0e497de65af6a1f1ccf2193f6 {"aliquot_tag": "ALQ_cc784569", "sample": "S85", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.S85_R2.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R2_001.fastq.gz 7000302972 FASTQ S85_R2 unaligned CPTAC3 c1d95347-4092-459b-bfc0-9f8b132fec1e d07f0f98e79f46c1a63b156e5f53cdab {"aliquot_tag": "ALQ_cc784569", "sample": "S85", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.transcriptome.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.transcriptome.gdc_realn.bam 11724699595 BAM transcriptome harmonized CPTAC3 85211d41-0e5a-46dd-a4c0-b44271418bcd 7e905dd662334b2cfcaa080931eb7ea9 {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.RNA-Seq.transcriptome.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.transcriptome.gdc_realn.bam 13006093053 BAM transcriptome harmonized CPTAC3 37eab4ae-5228-46e9-9ead-e0efa98ebbcb 346dc16538d8ae77fd4c4d904243f46e {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor"} -C3L-03378.RNA-Seq.transcriptome.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.transcriptome.gdc_realn.bam 8788647195 BAM transcriptome harmonized CPTAC3 a575149f-e180-452e-ab22-e548478cc8b0 3afb16e1dcfefafacd5ea769d6038203 {"aliquot_tag": "ALQ_cc784569", "gdc_sample_type": "Primary Tumor"} -C3L-03378.WGS.N C3L-03378 HNSCC WGS blood_normal CPT0200430002 CPT0200430002.WholeGenome.RP-1303.bam 69597804536 BAM aligned CPTAC3 11a4e2e2-2300-4aa2-9ee2-57c6472b0c55 b5083a6966041934931a199c81a1cb2b {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03378.WGS.N.hg38 C3L-03378 HNSCC WGS blood_normal CPT0200430002 d4fd14ea-995a-4030-b224-544874742c47_wgs_gdc_realn.bam 109146266405 BAM harmonized CPTAC3 ede9f162-9a03-4918-bb53-d4907388860e 9f755b8a4ff892418741219f88aa3a15 {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03378.WGS.T C3L-03378 HNSCC WGS tumor CPT0199880006 CPT0199880006.WholeGenome.RP-1303.bam 69161062180 BAM aligned CPTAC3 2cd02f43-4783-4990-9e48-6c7777730304 e2e0142cddadb670cabf290f76c4f283 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor"} -C3L-03378.WGS.T.hg38 C3L-03378 HNSCC WGS tumor CPT0199880006 3a309e18-6adc-4200-9961-4f696fcb2984_wgs_gdc_realn.bam 99464172070 BAM harmonized CPTAC3 aecf5b35-4feb-4a29-864d-2eaa7dcf8ca1 412083f8f0cdf6ba5b933e4a644e16cc {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor"} -C3L-03378.WXS.A C3L-03378 HNSCC WXS tissue_normal CPT0199890006 CPT0199890006.WholeExome.RP-1303.bam 26499410557 BAM aligned CPTAC3 f6d37872-70af-42c5-b89f-3651cb33df82 ee4eb6da6b84eb1835ba21c266b9c277 {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.WXS.A.hg38 C3L-03378 HNSCC WXS tissue_normal CPT0199890006 a7bfa0e7-f947-43f8-8f56-58be472c0576_wxs_gdc_realn.bam 36302155959 BAM harmonized CPTAC3 0464cc27-5734-45ea-9a72-139dcacc1222 e176630b7390f141959fd967022f25ca {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03378.WXS.N C3L-03378 HNSCC WXS blood_normal CPT0200430002 CPT0200430002.WholeExome.RP-1303.bam 25155190555 BAM aligned CPTAC3 7f3bc2b1-8ae7-47c2-a48f-529e299ed5a0 ab73e1d1dd7343143060994eeb2c1602 {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03378.WXS.N.hg38 C3L-03378 HNSCC WXS blood_normal CPT0200430002 d4fd14ea-995a-4030-b224-544874742c47_wxs_gdc_realn.bam 34848697712 BAM harmonized CPTAC3 8a903c70-64d6-4282-8503-3be43feb7c26 55c17e0a5fe1dfe793d4a8ea93160f18 {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03378.WXS.T C3L-03378 HNSCC WXS tumor CPT0199880006 CPT0199880006.WholeExome.RP-1303.bam 23450041321 BAM aligned CPTAC3 4f0f5d96-1633-433d-ab31-acf10464c942 e7f1527f1f19d25c67c502c78fa9fe37 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor"} -C3L-03378.WXS.T.hg38 C3L-03378 HNSCC WXS tumor CPT0199880006 3a309e18-6adc-4200-9961-4f696fcb2984_wxs_gdc_realn.bam 32364936005 BAM harmonized CPTAC3 344731e5-c562-4645-a65c-c1fa7eefed6d 80a1c29338b3b5d2bc8ac611c76ffc86 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor"} -C3L-03385.MethArray.Green.T C3L-03385 GBM Methylation_Array tumor CPT0239860006 204367490084_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 c5ef413a-9205-4a5a-a7ab-f2f44ee7ee5c 7e6e7f457338632f64f6d1101fcaa1c7 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor"} -C3L-03385.MethArray.Red.T C3L-03385 GBM Methylation_Array tumor CPT0239860006 204367490084_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 7bd922bd-4827-46be-b430-59a771ae6168 4e52ca91348a55ff6c64cb81678c1f60 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor"} -C3L-03385.miRNA-Seq.S7_L001_R1.T C3L-03385 GBM miRNA-Seq tumor CPT0239860013 200526_UNC32-K00270_0248_BHH7WFBBXY_CGATGT_S7_L001_R1_001.unaln.bam 380895617 BAM S7_L001_R1 unaligned CPTAC3 79b8f443-cb3f-491e-92ee-0fa93d0fe1cd fa84b0b0bce05fa4a47530b31493c085 {"aliquot_tag": "ALQ_ce27224d", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03385.miRNA-Seq.T.hg38 C3L-03385 GBM miRNA-Seq tumor CPT0239860013 e6fad453-db9d-466c-b35a-d4b2051bf395_mirnaseq_gdc_realn.bam 415432118 BAM harmonized CPTAC3 b4276839-8fa0-4b36-91ec-123ccf100dab 0c5454ac7c834028f0bb9dcf4ce0e5c3 {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor"} -C3L-03385.RNA-Seq.chimeric.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.chimeric.gdc_realn.bam 23618802 BAM chimeric harmonized CPTAC3 3a9d3af7-7aa2-4573-b8b2-b280d87fc18f 673e0f6c5216d4ece0fe9f6f12da3f6c {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor"} -C3L-03385.RNA-Seq.genomic.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.genomic.gdc_realn.bam 7673245866 BAM genomic harmonized CPTAC3 a9ed5897-bb28-40c8-9e57-bd1b8ad05f8f 916dd2d023f06d99a6e9494b983bf3ea {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor"} -C3L-03385.RNA-Seq.S17_L005_R1.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ S17_L005_R1 unaligned CPTAC3 fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 a5292248c7498c1bfbd864f3b0e567d4 {"aliquot_tag": "ALQ_ce27224d", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03385.RNA-Seq.S17_L005_R2.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ S17_L005_R2 unaligned CPTAC3 bad51e82-edda-4dae-9ae2-a378a2c50866 cc1f4db229f124174205692fef638689 {"aliquot_tag": "ALQ_ce27224d", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03385.RNA-Seq.transcriptome.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.transcriptome.gdc_realn.bam 9931519995 BAM transcriptome harmonized CPTAC3 683e2963-a2c2-4872-b1b6-40c5f46f060b 4c340b0f4c129230cb02e5affbebbb6d {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor"} -C3L-03385.WGS.N C3L-03385 GBM WGS blood_normal CPT0240540002 CPT0240540002.WholeGenome.RP-2158.bam 24847212386 BAM aligned CPTAC3 347cc10e-8a2e-464b-95a8-46c9bf006c10 90391fd8422d260364fc6daeb7b1d4dc {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal"} -C3L-03385.WGS.N.hg38 C3L-03385 GBM WGS blood_normal CPT0240540002 f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wgs_gdc_realn.bam 70348014229 BAM harmonized CPTAC3 9ddf2838-9c6e-46f8-a6fe-7df5a229e159 d60ccc4c3cedf7bc33c293eebbb6edcc {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal"} -C3L-03385.WGS.T C3L-03385 GBM WGS tumor CPT0239860006 CPT0239860006.WholeGenome.RP-2158.bam 23002457535 BAM aligned CPTAC3 e239e5f5-1111-4506-9c6f-45dde5665e7a 854b57a0e15dadf2454adfe0db6bb65f {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor"} -C3L-03385.WGS.T.hg38 C3L-03385 GBM WGS tumor CPT0239860006 d623559b-eaeb-4754-ad9a-9884f01c60a7_wgs_gdc_realn.bam 68019906430 BAM harmonized CPTAC3 1247c8ff-9ca8-448b-9a6b-fcf0385dde94 0cd8512ce89dd7f07cfcf967f690b5c8 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor"} -C3L-03385.WXS.N C3L-03385 GBM WXS blood_normal CPT0240540002 CPT0240540002.WholeExome.RP-1303.bam 23859008288 BAM aligned CPTAC3 7a89fc2e-3585-46d6-8832-3ac8e1b618ef 414cd571b8e03c1499ed2b1ecd61928b {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal"} -C3L-03385.WXS.N.hg38 C3L-03385 GBM WXS blood_normal CPT0240540002 f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wxs_gdc_realn.bam 33622502874 BAM harmonized CPTAC3 c5b5aae5-cc1e-4644-87d0-d21324604e2a b7d793f8e6fbed4c48a8a3b2c9df998a {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal"} -C3L-03385.WXS.T C3L-03385 GBM WXS tumor CPT0239860006 CPT0239860006.WholeExome.RP-1303.bam 18539111036 BAM aligned CPTAC3 2240b4a0-874d-40e3-b446-d018f18f318d dca90fc0af41cbc47e3ff22cdb07c0ca {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor"} -C3L-03385.WXS.T.hg38 C3L-03385 GBM WXS tumor CPT0239860006 d623559b-eaeb-4754-ad9a-9884f01c60a7_wxs_gdc_realn.bam 26146677855 BAM harmonized CPTAC3 faa8ff85-2285-4533-9a3c-3e04b16f0a2e 9b342deb744830acbee0447bf12e7cb3 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor"} -C3L-03387.MethArray.Green.T C3L-03387 GBM Methylation_Array tumor CPT0224330009 203271750057_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 d2f2840a-3282-4bdf-9146-4703151b0f2e fd21ffc9e751a7550407efc68a77d761 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor"} -C3L-03387.MethArray.Red.T C3L-03387 GBM Methylation_Array tumor CPT0224330009 203271750057_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 0a13a70b-1834-49c7-bb4a-b8577607a969 b983054560a25d13b0a150f9453865f0 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor"} -C3L-03387.miRNA-Seq.S32_L006_R1.T C3L-03387 GBM miRNA-Seq tumor CPT0224330006 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L006_R1_001.unaln.bam 306438351 BAM S32_L006_R1 unaligned CPTAC3 668b7402-385a-4e7e-b67a-b0512613f1cf fc723295895b376338f1c8af37c6070f {"aliquot_tag": "ALQ_a80cf96e", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03387.miRNA-Seq.T.hg38 C3L-03387 GBM miRNA-Seq tumor CPT0224330006 9e922a37-27de-4f89-87e2-e48174487e3d_mirnaseq_gdc_realn.bam 350297417 BAM harmonized CPTAC3 e442c697-c5a7-462d-82c8-8fd01fd1069a ebb17e626f374350ff68275275d2890f {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor"} -C3L-03387.RNA-Seq.chimeric.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.chimeric.gdc_realn.bam 43441468 BAM chimeric harmonized CPTAC3 3bd39ce0-4235-4c6e-9085-0e45434c9211 d9001cdf665c1d020733cf626dcebfe8 {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor"} -C3L-03387.RNA-Seq.genomic.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.genomic.gdc_realn.bam 8960958968 BAM genomic harmonized CPTAC3 b8c30c78-7c8a-4aa1-9627-550ca1084510 9b9a19580e1eb2f1e663a4523468c27a {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor"} -C3L-03387.RNA-Seq.S4_L001_R1.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R1_001.fastq.gz 4290080477 FASTQ S4_L001_R1 unaligned CPTAC3 441a47fe-4c5f-4806-953e-859958409898 e515442df5761c431f72c09afb9f7877 {"aliquot_tag": "ALQ_a80cf96e", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03387.RNA-Seq.S4_L001_R2.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R2_001.fastq.gz 4709248929 FASTQ S4_L001_R2 unaligned CPTAC3 843aca93-5c65-4532-8c3e-4281ae000aff e11ddb625334f25b7826e33aace0e44e {"aliquot_tag": "ALQ_a80cf96e", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03387.RNA-Seq.transcriptome.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.transcriptome.gdc_realn.bam 10177705869 BAM transcriptome harmonized CPTAC3 f3c88c37-8dbb-4fd4-8d77-4b6d2a20d267 6abbf25cf93af35ba3d1a1fa67d37593 {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor"} -C3L-03387.WGS.N C3L-03387 GBM WGS blood_normal CPT0226180002 CPT0226180002.WholeGenome.RP-1303.bam 50305187419 BAM aligned CPTAC3 a4addfa6-16cd-4ed4-abfc-20ada9fd1470 a8ec08b0b26acbde1db8d1f0c626f6f8 {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal"} -C3L-03387.WGS.N.hg38 C3L-03387 GBM WGS blood_normal CPT0226180002 4a22b011-e87f-4787-95a6-344797bb400c_wgs_gdc_realn.bam 72900382309 BAM harmonized CPTAC3 9ff7b3c7-589b-4c8b-b1f1-e24fb1c0a765 69b6c762bde62e687dd4816c473b7751 {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal"} -C3L-03387.WGS.T C3L-03387 GBM WGS tumor CPT0224330009 CPT0224330009.WholeGenome.RP-1303.bam 78260181663 BAM aligned CPTAC3 f0b229ff-afac-4d69-9603-86693aa65dd5 9961bb2c273ffa5cb320a6f33fa8def1 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor"} -C3L-03387.WGS.T.hg38 C3L-03387 GBM WGS tumor CPT0224330009 8899e630-70e4-4c89-865a-ccb799e2fe2e_wgs_gdc_realn.bam 114493276339 BAM harmonized CPTAC3 8ceb11e0-157a-4cdb-8392-db452c4e04b6 5c26418831042be2724d805345121fab {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor"} -C3L-03387.WXS.N C3L-03387 GBM WXS blood_normal CPT0226180002 CPT0226180002.WholeExome.RP-1303.bam 20960602102 BAM aligned CPTAC3 5776e90a-cfe5-4884-81a3-b441678f1a68 b18e3e944a880f7bc53114c6865ef05c {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal"} -C3L-03387.WXS.N.hg38 C3L-03387 GBM WXS blood_normal CPT0226180002 4a22b011-e87f-4787-95a6-344797bb400c_wxs_gdc_realn.bam 27562225680 BAM harmonized CPTAC3 306b0614-1f42-4115-9a1e-6d69007b0fa4 39af12e241af019dc187f38a0d34ea25 {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal"} -C3L-03387.WXS.T C3L-03387 GBM WXS tumor CPT0224330009 CPT0224330009.WholeExome.RP-1303.bam 22898239054 BAM aligned CPTAC3 9323f4e3-8e20-4c3d-9497-1bd5e752a65b 53f02f09937b816518699e03eb17ecc4 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor"} -C3L-03387.WXS.T.hg38 C3L-03387 GBM WXS tumor CPT0224330009 8899e630-70e4-4c89-865a-ccb799e2fe2e_wxs_gdc_realn.bam 30974758890 BAM harmonized CPTAC3 2b93a7ef-252b-411c-b7b8-bd01f6f085e9 6b332419ad98397d16c0425ab194c6f8 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor"} -C3L-03388.MethArray.Green.A C3L-03388 PDA Methylation_Array tissue_normal CPT0239920007 203561620162_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d5bde530-cfcf-41b3-b633-acde7a293454 1a364f1945f0b77a7d712854364dc7ea {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03388.MethArray.Green.T C3L-03388 PDA Methylation_Array tumor CPT0239910007 203561620089_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 7747945b-1651-413b-bb00-bc247a7145c8 28a93ed1e3cb03900c7f0dbf2a918c54 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03388.MethArray.Red.A C3L-03388 PDA Methylation_Array tissue_normal CPT0239920007 203561620162_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 c4d8d230-278a-4f99-9cb2-0d92c1737116 067ddb7c140bb1ffffc5a9ff9b1ed2b8 {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03388.MethArray.Red.T C3L-03388 PDA Methylation_Array tumor CPT0239910007 203561620089_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 2cf2c340-11e0-4fea-be82-a8d3367717bc 06d6a38b54d5d5256ab555bfe55bb614 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03388.miRNA-Seq.S24_L005_R1.T C3L-03388 PDA miRNA-Seq tumor CPT0239910010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATCACG_S24_L005_R1_001.unaln.bam 220226995 BAM S24_L005_R1 unaligned CPTAC3 4ab26243-d9aa-4fa9-94ff-ce34e600ad97 6ccd39de403cbe6c70f2eb4a8ec08761 {"aliquot_tag": "ALQ_2e527c42", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03388.miRNA-Seq.T.hg38 C3L-03388 PDA miRNA-Seq tumor CPT0239910010 20793ec0-af80-483e-ba5d-57612a270391_mirnaseq_gdc_realn.bam 247721626 BAM harmonized CPTAC3 39bcaeff-53d9-4fc3-9665-8793556d8eb7 218dd6c744fde5cab1659e571cf26030 {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor"} -C3L-03388.RNA-Seq.chimeric.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.chimeric.gdc_realn.bam 39633306 BAM chimeric harmonized CPTAC3 5b351289-323f-4377-a2f9-22274af39a85 e56d1ff16c831d9682aa92bf3a3f422c {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor"} -C3L-03388.RNA-Seq.genomic.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.genomic.gdc_realn.bam 7973194279 BAM genomic harmonized CPTAC3 7d02eba5-a44f-4ef5-8fe4-58af0ebd1ca1 8fa51047eaf4a9b4c4975e7bc90b58aa {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor"} -C3L-03388.RNA-Seq.S14_L004_R1.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R1_001.fastq.gz 3579047573 FASTQ S14_L004_R1 unaligned CPTAC3 a1924850-236c-4907-9300-b2171ab11e5d ee0b4e7d557a3f958656330501c4f68c {"aliquot_tag": "ALQ_2e527c42", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03388.RNA-Seq.S14_L004_R2.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R2_001.fastq.gz 4044364470 FASTQ S14_L004_R2 unaligned CPTAC3 64d5bbe7-888e-4aba-bf57-85cc0d91d9bd 0e70341c126fee19b61fc94dc7718477 {"aliquot_tag": "ALQ_2e527c42", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03388.RNA-Seq.transcriptome.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.transcriptome.gdc_realn.bam 10058377030 BAM transcriptome harmonized CPTAC3 278f93c1-cae5-4751-a660-d0c46900b4e5 e17d9fea4169579afdc8afd8c9b9ef2a {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor"} -C3L-03388.Targeted.T C3L-03388 PDA Targeted_Sequencing tumor CPT0239910007 CPT0239910007.CustomSelection.RP-1303.PDO-18786.bam 5226091518 BAM aligned CPTAC3 a7843207-2d68-408c-8c81-90a36f5d610b 59e993cc38e3d512613dce2c0e54767f {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03388.Targeted.T.hg38 C3L-03388 PDA Targeted_Sequencing tumor CPT0239910007 26f5781e-10b8-4069-8260-b68ea91c0148_targetedsequencing_gdc_realn.bam 7160865665 BAM harmonized CPTAC3 42dd686d-9960-4a6d-a648-d8852cf99bcb fd356b39b908866ca0d1b604a1dca132 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03388.WGS.N C3L-03388 PDA WGS blood_normal CPT0240550002 CPT0240550002.WholeGenome.RP-1303.bam 59336607667 BAM aligned CPTAC3 d074ac09-a80e-43f8-9f6a-ed926b9fea94 7d1b434baf10da9cce6d8abf8ee47df0 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03388.WGS.N.hg38 C3L-03388 PDA WGS blood_normal CPT0240550002 9deb55a2-79c7-42fb-a8ed-8fa369928e19_wgs_gdc_realn.bam 87902483557 BAM harmonized CPTAC3 6eabbd7b-9a61-4dce-931f-86a87340c9ed e13b085835871039b54cc7943e2e6a31 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03388.WGS.T C3L-03388 PDA WGS tumor CPT0239910007 CPT0239910007.WholeGenome.RP-1303.bam 88218827799 BAM aligned CPTAC3 e3b45da9-892d-489c-b1a0-2e7aa644c879 9570f5a0eee76d90a51764f5c8f89d8b {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03388.WGS.T.hg38 C3L-03388 PDA WGS tumor CPT0239910007 26f5781e-10b8-4069-8260-b68ea91c0148_wgs_gdc_realn.bam 128844148873 BAM harmonized CPTAC3 1605d3cb-eb0a-4932-9c8a-f318acf28a7c 59784c72cc11a3ee37a94d34a2783f41 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03388.WXS.A C3L-03388 PDA WXS tissue_normal CPT0239920007 CPT0239920007.WholeExome.RP-1303.bam 24536387839 BAM aligned CPTAC3 7c050dc6-7d9e-4f95-90ab-9c2c3caf0d13 ca6c6a9d5a7abec9b4948f85a597bb2b {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03388.WXS.A.hg38 C3L-03388 PDA WXS tissue_normal CPT0239920007 73841142-7e54-4bcd-a4af-10b3ac04fb41_wxs_gdc_realn.bam 33645964774 BAM harmonized CPTAC3 f872010b-d90f-46d4-8dfd-c2fe33c6a672 313fce8fdd90f0199566152e5f829977 {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03388.WXS.N C3L-03388 PDA WXS blood_normal CPT0240550002 CPT0240550002.WholeExome.RP-1303.bam 36660730015 BAM aligned CPTAC3 6e39b6ee-d475-414b-a2da-89637bcf7cad 6385f57e3d10fa93c2e8a17789f6df30 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03388.WXS.N.hg38 C3L-03388 PDA WXS blood_normal CPT0240550002 9deb55a2-79c7-42fb-a8ed-8fa369928e19_wxs_gdc_realn.bam 50672432315 BAM harmonized CPTAC3 714cb467-bc1e-48f6-98c8-c7f08d14e740 d740f42f9eff2a8cc44bbad3d2fb12e0 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03388.WXS.T C3L-03388 PDA WXS tumor CPT0239910007 CPT0239910007.WholeExome.RP-1303.bam 46934107092 BAM aligned CPTAC3 600277d4-b61d-4995-b48b-df87757d03c3 96812dc2e4ba7dd21540fa5da3d01dca {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03388.WXS.T.hg38 C3L-03388 PDA WXS tumor CPT0239910007 26f5781e-10b8-4069-8260-b68ea91c0148_wxs_gdc_realn.bam 65906106565 BAM harmonized CPTAC3 55625724-26bf-4cf1-a58b-34c1d5509a32 f518b91cd46bca485904b9932b8591f8 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor"} -C3L-03390.MethArray.Green.T C3L-03390 GBM Methylation_Array tumor CPT0224390011 203271750057_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 57c87550-a9e8-43e6-9554-90970b614812 befff3e7a4c6425e6462d6e4d55e9810 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor"} -C3L-03390.MethArray.Red.T C3L-03390 GBM Methylation_Array tumor CPT0224390011 203271750057_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 cbb24d59-cd02-49f0-9ab9-a9fad7e5c51d 96f3cfd1a62db4a89a10173e81813118 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor"} -C3L-03390.miRNA-Seq.S33_L006_R1.T C3L-03390 GBM miRNA-Seq tumor CPT0224390007 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L006_R1_001.unaln.bam 217915775 BAM S33_L006_R1 unaligned CPTAC3 62b6f96c-5452-4340-a645-417daf6afc50 71c156e3879b817e42ef694fa987b722 {"aliquot_tag": "ALQ_95bbd159", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03390.miRNA-Seq.T.hg38 C3L-03390 GBM miRNA-Seq tumor CPT0224390007 5c54c93d-0ec9-4bf4-971e-6ca452ab288c_mirnaseq_gdc_realn.bam 244686145 BAM harmonized CPTAC3 aba741d6-2e25-4497-b40a-eaf9f3ffaef8 15d515ce262e7d461ec887600d0b757b {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor"} -C3L-03390.RNA-Seq.chimeric.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.chimeric.gdc_realn.bam 47822820 BAM chimeric harmonized CPTAC3 49983b02-c290-43cc-b255-21be7efc5856 ef63fd899474f9f1a60cb78a6e63048e {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor"} -C3L-03390.RNA-Seq.genomic.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.genomic.gdc_realn.bam 10085498850 BAM genomic harmonized CPTAC3 fab1b6e2-a283-4ff5-9384-3333bcef3d0c 790994ed1bc7ed3894a99c720963b314 {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor"} -C3L-03390.RNA-Seq.S9_L003_R1.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R1_001.fastq.gz 4863781844 FASTQ S9_L003_R1 unaligned CPTAC3 14b78975-bb11-45e4-bf3a-6231ae15c533 6569922b65b2b84abe2d19f2bbc0a385 {"aliquot_tag": "ALQ_95bbd159", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03390.RNA-Seq.S9_L003_R2.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R2_001.fastq.gz 5588208336 FASTQ S9_L003_R2 unaligned CPTAC3 f30d4502-0e7e-4f11-9f7d-0c329004b5a0 4b854575cd249247fb6e9eed38125003 {"aliquot_tag": "ALQ_95bbd159", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03390.RNA-Seq.transcriptome.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.transcriptome.gdc_realn.bam 12235347665 BAM transcriptome harmonized CPTAC3 a3325838-a6e4-4c04-bd94-3c735067aeb4 733e263ccf0f50696c6843abe6b39190 {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor"} -C3L-03390.WGS.N C3L-03390 GBM WGS blood_normal CPT0226190002 CPT0226190002.WholeGenome.RP-1303.bam 56285195181 BAM aligned CPTAC3 e7880621-0431-45f0-a58a-746bdbdeb8b1 cf9c14e795769212d071f119a7aeeb4b {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03390.WGS.N.hg38 C3L-03390 GBM WGS blood_normal CPT0226190002 d9097320-6595-429e-8660-e663f114d0ee_wgs_gdc_realn.bam 83351438529 BAM harmonized CPTAC3 a9ce8457-208f-4107-99f2-3497084cfb8c 5162a4ca42436108c4d7f71dcfe960f6 {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03390.WGS.T C3L-03390 GBM WGS tumor CPT0224390011 CPT0224390011.WholeGenome.RP-1303.bam 78665301242 BAM aligned CPTAC3 f1fc03b5-8c96-4381-a6aa-3fe89a894f9d 1a5ae0191da7dd137f8cd7301b866824 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor"} -C3L-03390.WGS.T.hg38 C3L-03390 GBM WGS tumor CPT0224390011 90326737-c1a1-4276-aebc-450fe0e46dfa_wgs_gdc_realn.bam 115355123029 BAM harmonized CPTAC3 8d3e0c03-13dd-4a5e-971a-b3b3c731ac1f e28ed1bf0ce18df0e5c0c878aa778cb6 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor"} -C3L-03390.WXS.N C3L-03390 GBM WXS blood_normal CPT0226190002 CPT0226190002.WholeExome.RP-1303.bam 37906602852 BAM aligned CPTAC3 1fe56c94-0283-4d67-81e4-e016c56c72bf 7e8fb2b352a25be4b579b5f701738b5a {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03390.WXS.N.hg38 C3L-03390 GBM WXS blood_normal CPT0226190002 d9097320-6595-429e-8660-e663f114d0ee_wxs_gdc_realn.bam 52813682649 BAM harmonized CPTAC3 ff22df53-aa8c-4ac1-8fd3-eeb507d233c6 a193d857ea3c406854bc5854be7bf12b {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03390.WXS.T C3L-03390 GBM WXS tumor CPT0224390011 CPT0224390011.WholeExome.RP-1303.bam 28518710275 BAM aligned CPTAC3 3beaf56a-a3c2-4fe7-9796-709d2bc26178 ac143125ca9fd14fb783859bc7630e05 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor"} -C3L-03390.WXS.T.hg38 C3L-03390 GBM WXS tumor CPT0224390011 90326737-c1a1-4276-aebc-450fe0e46dfa_wxs_gdc_realn.bam 39394776431 BAM harmonized CPTAC3 bcc283db-72c1-424c-9fe7-8a8b744c2dae 25cf9bf8f7bea9ce41c18d561d634517 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor"} -C3L-03392.MethArray.Green.T C3L-03392 GBM Methylation_Array tumor CPT0219080007 203219670054_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 11ca1dfd-fcbb-446f-8930-9e577b7a855b b96196229b47c16a47492cdcd7ff4bc0 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor"} -C3L-03392.MethArray.Red.T C3L-03392 GBM Methylation_Array tumor CPT0219080007 203219670054_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 2499381d-b5e7-4fff-a56d-afca5afa154f bc391f9c404d897001644a97682e9f90 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor"} -C3L-03392.miRNA-Seq.S31_L008_R1.T C3L-03392 GBM miRNA-Seq tumor CPT0219080010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L008_R1_001.unaln.bam 212480896 BAM S31_L008_R1 unaligned CPTAC3 14c329cb-8054-4e87-953d-30e4a1f0e88d 87775075ac3b8092f2832fcd3e83b2e4 {"aliquot_tag": "ALQ_46684886", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03392.miRNA-Seq.T.hg38 C3L-03392 GBM miRNA-Seq tumor CPT0219080010 4600cb46-a833-4bfb-92da-bd91183872f3_mirnaseq_gdc_realn.bam 238309944 BAM harmonized CPTAC3 5da98d64-ce8f-4452-b9af-83cc36e5510b dcfdd503fb70ecc2fa86a7dab8c7faf4 {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor"} -C3L-03392.RNA-Seq.chimeric.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.chimeric.gdc_realn.bam 32289590 BAM chimeric harmonized CPTAC3 e03c27da-a6c2-4611-9643-936ac8f004da 7228cd9277f09c2e07184acd99b3a08e {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor"} -C3L-03392.RNA-Seq.genomic.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.genomic.gdc_realn.bam 8987482437 BAM genomic harmonized CPTAC3 1df3ced7-2403-41b4-9a3f-f28554cbadcd 7147007dd96c77ab4c29a35b08c04853 {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor"} -C3L-03392.RNA-Seq.S30_L008_R1.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R1_001.fastq.gz 3680900354 FASTQ S30_L008_R1 unaligned CPTAC3 6dd441ec-fb27-41f5-80b9-816dbeab8275 4c2bd75370171b65ecbed9a7e045454f {"aliquot_tag": "ALQ_46684886", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03392.RNA-Seq.S30_L008_R2.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R2_001.fastq.gz 3910349127 FASTQ S30_L008_R2 unaligned CPTAC3 1335ed53-57d6-463c-82aa-af700b3b1553 822740b5ab69c3bcca84a26caa1297e2 {"aliquot_tag": "ALQ_46684886", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03392.RNA-Seq.transcriptome.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.transcriptome.gdc_realn.bam 11321765097 BAM transcriptome harmonized CPTAC3 1e24c063-fed7-4dfe-8636-fe2c697ff4e9 18f1abab0917ce3f32d77254fcfbf7f4 {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor"} -C3L-03392.WGS.N C3L-03392 GBM WGS blood_normal CPT0220450002 CPT0220450002.WholeGenome.RP-1303.bam 63771051310 BAM aligned CPTAC3 31374716-6c9e-44bd-9cf7-26b9b6759f2e b80ae16db1d9fae7af0918aaf61f67ff {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-03392.WGS.N.hg38 C3L-03392 GBM WGS blood_normal CPT0220450002 5d4b78a2-4914-4360-afee-3b4972851627_wgs_gdc_realn.bam 91133707316 BAM harmonized CPTAC3 015f04c9-ea83-461e-b589-16d23a1373f5 516a012dcb9fca39b5339fe6ef5a7f01 {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-03392.WGS.T C3L-03392 GBM WGS tumor CPT0219080007 CPT0219080007.WholeGenome.RP-1303.bam 59830116648 BAM aligned CPTAC3 f548d6aa-d69d-479d-95b8-8af58e310b5a c5b35c3875b32b2018fc4f6c0b0c5d41 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor"} -C3L-03392.WGS.T.hg38 C3L-03392 GBM WGS tumor CPT0219080007 cf4c95bb-37e5-424b-b1bc-e4de8f4a81cd_wgs_gdc_realn.bam 86338605963 BAM harmonized CPTAC3 00dabba2-edbc-4787-ab50-7d8d7aa7a959 7607128f35208f23e9ca999cda529dea {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor"} -C3L-03392.WXS.N C3L-03392 GBM WXS blood_normal CPT0220450002 CPT0220450002.WholeExome.RP-1303.bam 22863749107 BAM aligned CPTAC3 e193928f-e27d-429d-817e-c6b43f96f87d b64b4ca9fb2550170952ac9b1a73f87c {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-03392.WXS.N.hg38 C3L-03392 GBM WXS blood_normal CPT0220450002 5d4b78a2-4914-4360-afee-3b4972851627_wxs_gdc_realn.bam 31249486032 BAM harmonized CPTAC3 d0ad30e4-011e-415b-a208-9b156b2cc89b 2b877d516440abe3c613a3af8cc20061 {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal"} -C3L-03392.WXS.T C3L-03392 GBM WXS tumor CPT0219080007 CPT0219080007.WholeExome.RP-1303.bam 25067481514 BAM aligned CPTAC3 f1032b46-3610-4409-9aa7-6519a2781c67 123c1c33caea67085a59b3704fcc8b52 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor"} -C3L-03392.WXS.T.hg38 C3L-03392 GBM WXS tumor CPT0219080007 cf4c95bb-37e5-424b-b1bc-e4de8f4a81cd_wxs_gdc_realn.bam 35093321070 BAM harmonized CPTAC3 f643293b-88fd-43b2-8f32-1ee73fca4566 ca93baf775fda94998dc03cde9109141 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor"} -C3L-03394.MethArray.Green.A C3L-03394 PDA Methylation_Array tissue_normal CPT0224470007 203561450018_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6093fa14-a942-4a0d-8d6e-b99da931fc7a a60c7340f63e4689d17769e4ff765ee0 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03394.MethArray.Green.T C3L-03394 PDA Methylation_Array tumor CPT0224460007 203561620080_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d8fbae91-e302-44fb-8555-10fabded186d 8e3156f9bf0016b06f903adf5c48c497 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03394.MethArray.Red.A C3L-03394 PDA Methylation_Array tissue_normal CPT0224470007 203561450018_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 e92abecb-bd1c-4ba7-8c1e-00b1fc32337e 8f44910ded6b8c8e643701095d539af4 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03394.MethArray.Red.T C3L-03394 PDA Methylation_Array tumor CPT0224460007 203561620080_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 6c3dc853-93ff-4a37-b870-fc0783473868 ac2d677077da3670bd5ec74430fd55be {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03394.miRNA-Seq.S31_L004_R1.T C3L-03394 PDA miRNA-Seq tumor CPT0224460010 190813_UNC32-K00270_0196_AH5MCWBBXY_CGATGT_S31_L004_R1_001.unaln.bam 268911384 BAM S31_L004_R1 unaligned CPTAC3 5bfe37d7-0d13-4e68-a74a-08a325650f4e 677e50f77caf236e89e85c7d61ac8072 {"aliquot_tag": "ALQ_8d91d2d2", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03394.miRNA-Seq.T.hg38 C3L-03394 PDA miRNA-Seq tumor CPT0224460010 bf997f28-674d-4404-b053-0d3b71365543_mirnaseq_gdc_realn.bam 307368018 BAM harmonized CPTAC3 973d2b64-00a5-4d2f-98ce-a95a963dd883 c023e9ac0c9a0295afac71c1de286fdb {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor"} -C3L-03394.RNA-Seq.chimeric.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.chimeric.gdc_realn.bam 173679534 BAM chimeric harmonized CPTAC3 934bd5ad-79a1-4263-ab8e-abdd3eada3d8 108d82f17017d25bc8955ba710d043fd {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor"} -C3L-03394.RNA-Seq.genomic.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.genomic.gdc_realn.bam 11919073814 BAM genomic harmonized CPTAC3 e95e2227-7d9b-4b28-b1cc-a8f7dd1d009d a19ed43ccb96a4a2929c5745b6e70ec1 {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor"} -C3L-03394.RNA-Seq.S10_L008_R1.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R1_001.fastq.gz 4407192011 FASTQ S10_L008_R1 unaligned CPTAC3 e3888b98-9e02-4ba8-a9c3-9f0997c579fe 175a491f3d1ab50b78591e609e4167d1 {"aliquot_tag": "ALQ_8d91d2d2", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03394.RNA-Seq.S10_L008_R2.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R2_001.fastq.gz 4500709300 FASTQ S10_L008_R2 unaligned CPTAC3 e23e4e4c-16a8-4696-acd6-4b60cda0de5f 51563473da0936b7b6c706f4fcdb133a {"aliquot_tag": "ALQ_8d91d2d2", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03394.RNA-Seq.transcriptome.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.transcriptome.gdc_realn.bam 8807523120 BAM transcriptome harmonized CPTAC3 e48ea980-1288-43a4-baad-4848223699fc 06dd8b47387034699dda222f653cf30d {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor"} -C3L-03394.Targeted.T C3L-03394 PDA Targeted_Sequencing tumor CPT0224460007 CPT0224460007.CustomSelection.RP-1303.PDO-18786.bam 5226646505 BAM aligned CPTAC3 93956038-3fbb-49a7-8776-0f56584287a8 0d3ac02f4648e79e4f8c236d0de4c021 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03394.Targeted.T.hg38 C3L-03394 PDA Targeted_Sequencing tumor CPT0224460007 431abcdf-62b6-4732-9771-3256aa0dd9ac_targetedsequencing_gdc_realn.bam 7333257724 BAM harmonized CPTAC3 8fa1ce60-8191-49a6-8c52-d04081afda86 1b8aba33441be87a69d7b094e3b5e31e {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03394.WGS.N C3L-03394 PDA WGS blood_normal CPT0226210002 CPT0226210002.WholeGenome.RP-1303.bam 59926144752 BAM aligned CPTAC3 3dfcc367-a5da-4b7c-9e3c-b935cf58ce90 7890eced9dae114aca55c8701d1b230a {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03394.WGS.N.hg38 C3L-03394 PDA WGS blood_normal CPT0226210002 13d28581-4815-478d-9d61-e5b65125a5f3_wgs_gdc_realn.bam 87193743192 BAM harmonized CPTAC3 9a5fd7e4-f999-4b2c-bf4f-9614fe6f7028 8a0893e46374597b61831b9b0a1b127d {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03394.WGS.T C3L-03394 PDA WGS tumor CPT0224460007 CPT0224460007.WholeGenome.RP-1303.bam 82964955310 BAM aligned CPTAC3 8080e1ee-fefa-403b-8af1-e61825d1a584 70d9aa491d3c49e9a42abc9ddedbb5f2 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03394.WGS.T.hg38 C3L-03394 PDA WGS tumor CPT0224460007 431abcdf-62b6-4732-9771-3256aa0dd9ac_wgs_gdc_realn.bam 120959357830 BAM harmonized CPTAC3 4f8bc9e2-6f93-48d6-a5a2-85d5ca842255 3f7c691a97745815a38d774144c30659 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03394.WXS.A C3L-03394 PDA WXS tissue_normal CPT0224470007 CPT0224470007.WholeExome.RP-1303.bam 19570992289 BAM aligned CPTAC3 94ba40d0-4e76-4305-b2c0-7fcaa3f8779d 5f583ca25a192be638b41440447a9fc3 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03394.WXS.A.hg38 C3L-03394 PDA WXS tissue_normal CPT0224470007 75db2bb5-ec59-4597-8326-477bbc02d347_wxs_gdc_realn.bam 27136326752 BAM harmonized CPTAC3 74c6db05-3be7-45d9-b2e7-65d92a69bce8 97fc4bd09c7eb989862e29db98457bb8 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03394.WXS.N C3L-03394 PDA WXS blood_normal CPT0226210002 CPT0226210002.WholeExome.RP-1303.bam 32328885780 BAM aligned CPTAC3 e897fe6b-63ee-425a-8f1f-b443a6f35e6b bec862f8853f2a6705ab44f98cc38a8a {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03394.WXS.N.hg38 C3L-03394 PDA WXS blood_normal CPT0226210002 13d28581-4815-478d-9d61-e5b65125a5f3_wxs_gdc_realn.bam 44764873472 BAM harmonized CPTAC3 f7cd30e2-e7e4-4593-8cb1-73b6c76916bb df27e44a94d2d37d8e72094793996b4e {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03394.WXS.T C3L-03394 PDA WXS tumor CPT0224460007 CPT0224460007.WholeExome.RP-1303.bam 52083143591 BAM aligned CPTAC3 19407ae6-5903-49e7-845b-ef9fd3af1cc9 f8f3f979f4fbc978a8957027250e4787 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03394.WXS.T.hg38 C3L-03394 PDA WXS tumor CPT0224460007 431abcdf-62b6-4732-9771-3256aa0dd9ac_wxs_gdc_realn.bam 73187944820 BAM harmonized CPTAC3 5543a12b-57ca-408e-816b-6f3e2d0718b5 088a21c1ae76ab2ac7fd3c9b5e486195 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor"} -C3L-03395.MethArray.Green.A C3L-03395 PDA Methylation_Array tissue_normal CPT0276030009 203561620072_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0b7b6bfa-75ef-4537-84cb-6498f515dfbc f44089225ab8c65dfea87af94a8aa1e5 {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03395.MethArray.Green.T C3L-03395 PDA Methylation_Array tumor CPT0276010006 203561450099_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9f8bd393-e9a5-4520-aabc-df335320a66b 7113134d65ec80dd786558da4992ca8e {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03395.MethArray.Red.A C3L-03395 PDA Methylation_Array tissue_normal CPT0276030009 203561620072_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6379c743-5fb9-40d7-852f-fd6aaab39b19 c8a8f72545bb52ca1f410321be4f1bb9 {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03395.MethArray.Red.T C3L-03395 PDA Methylation_Array tumor CPT0276010006 203561450099_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 d1d0d0dd-47f4-4841-84dc-8389eef10126 8dcc1667b7eee1e117c5a18a1a1891a3 {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03395.miRNA-Seq.S26_L003_R1.T C3L-03395 PDA miRNA-Seq tumor CPT0276010009 190813_UNC32-K00270_0196_AH5MCWBBXY_TACAGC_S26_L003_R1_001.unaln.bam 182692906 BAM S26_L003_R1 unaligned CPTAC3 398799d9-a192-47ae-8f92-39db8d9748fb 54626fa20d7b625a5b9e2e469832f07e {"aliquot_tag": "ALQ_1b98da7c", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03395.miRNA-Seq.T.hg38 C3L-03395 PDA miRNA-Seq tumor CPT0276010009 16746a0b-86d7-4ea3-a1b6-ac0546c9817f_mirnaseq_gdc_realn.bam 206536175 BAM harmonized CPTAC3 02f37894-31a7-4652-8308-c7adc26a68c7 0128674e00e2e9d7357f00e764d57981 {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor"} -C3L-03395.RNA-Seq.chimeric.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.chimeric.gdc_realn.bam 40845084 BAM chimeric harmonized CPTAC3 d970eaff-8a56-4812-b75b-e6820dd5baf3 87211913070bc8f6f839cdeeb2f361ce {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor"} -C3L-03395.RNA-Seq.genomic.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.genomic.gdc_realn.bam 9600345071 BAM genomic harmonized CPTAC3 5571151e-d599-4879-ac3d-8b799251dda6 2e40975013a968e6d2490af8ef36f602 {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor"} -C3L-03395.RNA-Seq.S15_L004_R1.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R1_001.fastq.gz 4237385037 FASTQ S15_L004_R1 unaligned CPTAC3 0750a61a-81eb-4579-9497-2769252187dd 5055ef7ea4c4bdae6b0371d7541ab155 {"aliquot_tag": "ALQ_1b98da7c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03395.RNA-Seq.S15_L004_R2.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R2_001.fastq.gz 4907359123 FASTQ S15_L004_R2 unaligned CPTAC3 41738e5a-a6b4-4fec-8236-77c1c1541095 a59393c55a3ec7a2313e526eb0a7f57a {"aliquot_tag": "ALQ_1b98da7c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03395.RNA-Seq.transcriptome.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.transcriptome.gdc_realn.bam 12246004788 BAM transcriptome harmonized CPTAC3 2a92e793-ebd9-4b67-a94a-d6e85c6276da dec9ba21afc79f974371a34e9aacfe18 {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor"} -C3L-03395.Targeted.T C3L-03395 PDA Targeted_Sequencing tumor CPT0276010006 CPT0276010006.CustomSelection.RP-1303.PDO-18786.bam 4580467288 BAM aligned CPTAC3 ae3c69ea-6cdf-4aa8-86a3-f00506992493 4f37b44e2d9380cf90b10cb1b41a1f4c {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03395.Targeted.T.hg38 C3L-03395 PDA Targeted_Sequencing tumor CPT0276010006 6c385d7e-9b75-4b98-92f8-903fd6337d95_targetedsequencing_gdc_realn.bam 6464477728 BAM harmonized CPTAC3 ced2ea66-2409-4c23-a343-51dc874ef10b 5e049bc80024db607368e4140a4bae1a {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03395.WGS.N C3L-03395 PDA WGS blood_normal CPT0265950002 CPT0265950002.WholeGenome.RP-1303.bam 71130572885 BAM aligned CPTAC3 13b74f54-2518-4a32-917b-e85c88feab56 00096a982a87e433ba70761c368a0a69 {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal"} -C3L-03395.WGS.N.hg38 C3L-03395 PDA WGS blood_normal CPT0265950002 ccbbc857-6f4f-4bbb-8faa-84b5092fe6d6_wgs_gdc_realn.bam 102598740958 BAM harmonized CPTAC3 0f30ed67-8804-4134-b186-d2a5532f7997 edeba8426551ff4f87337e8b62db12d2 {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal"} -C3L-03395.WGS.T C3L-03395 PDA WGS tumor CPT0276010006 CPT0276010006.WholeGenome.RP-1303.bam 56955498714 BAM aligned CPTAC3 7abaa793-37c7-496f-87b0-1c241df39406 bb56cb020ca2c1dadaf1fe9924e53b96 {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03395.WGS.T.hg38 C3L-03395 PDA WGS tumor CPT0276010006 6c385d7e-9b75-4b98-92f8-903fd6337d95_wgs_gdc_realn.bam 81236680801 BAM harmonized CPTAC3 eb79c991-de2c-4091-872f-d93db10d9d5b ff90e26ad50a430ef637137193d2fc3d {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03395.WXS.A C3L-03395 PDA WXS tissue_normal CPT0276030009 CPT0276030009.WholeExome.RP-1303.bam 30219699001 BAM aligned CPTAC3 3eb4ae3c-1f21-4931-bbc1-b693ee1f23df f44534032589f8ba90a470ff89c7856d {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03395.WXS.A.hg38 C3L-03395 PDA WXS tissue_normal CPT0276030009 d2d46559-47a2-4764-be16-0eb4012287e2_wxs_gdc_realn.bam 40918593054 BAM harmonized CPTAC3 55e1c3d2-9ffe-48f8-abf9-199b58798ce6 f8b8004836cec260b63e33b91d5e7bf9 {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03395.WXS.N C3L-03395 PDA WXS blood_normal CPT0265950002 CPT0265950002.WholeExome.RP-1303.bam 21609893728 BAM aligned CPTAC3 f55f1924-ad22-4266-bae4-64769e718af4 146602e09c65e73b9777403205733fde {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal"} -C3L-03395.WXS.N.hg38 C3L-03395 PDA WXS blood_normal CPT0265950002 ccbbc857-6f4f-4bbb-8faa-84b5092fe6d6_wxs_gdc_realn.bam 29108131230 BAM harmonized CPTAC3 ad2b9fe6-ba83-4635-bc37-6deebbcdaa38 043660abfe65f0aeb6b3ca4c65d03687 {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal"} -C3L-03395.WXS.T C3L-03395 PDA WXS tumor CPT0276010006 CPT0276010006.WholeExome.RP-1303.bam 33041758289 BAM aligned CPTAC3 c24d9399-56e4-4886-8c21-c22e2391df0a 93993963bc690eda55eba48b34672f89 {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03395.WXS.T.hg38 C3L-03395 PDA WXS tumor CPT0276010006 6c385d7e-9b75-4b98-92f8-903fd6337d95_wxs_gdc_realn.bam 44800051289 BAM harmonized CPTAC3 94882d50-5d24-460d-83ee-32fc8801ab2d df48aac0d33aefeee89eec7cf74508be {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor"} -C3L-03400.MethArray.Green.T C3L-03400 GBM Methylation_Array tumor CPT0224540010 203281980258_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 45e29e19-34bd-4a33-adb1-37b4963e6922 3599b6a50255bf2c783f1abe1755f35e {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor"} -C3L-03400.MethArray.Red.T C3L-03400 GBM Methylation_Array tumor CPT0224540010 203281980258_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 110a35b4-5729-4ff8-b5ae-177b037ced52 de236bb6271c9e72bdb29fb8d04eb0cf {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor"} -C3L-03400.miRNA-Seq.S34_L006_R1.T C3L-03400 GBM miRNA-Seq tumor CPT0224540007 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L006_R1_001.unaln.bam 250092665 BAM S34_L006_R1 unaligned CPTAC3 7f056ee2-4f80-4905-b693-60656e0c003e acb4bfa5e14088ad11d8dd93cfd69347 {"aliquot_tag": "ALQ_bb72f6f5", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03400.miRNA-Seq.T.hg38 C3L-03400 GBM miRNA-Seq tumor CPT0224540007 7d6319dc-ad4a-4903-a45c-c1fa25f77998_mirnaseq_gdc_realn.bam 282332942 BAM harmonized CPTAC3 ab2eb35d-73a4-44fc-bb89-9dff31a5fb5e 2ce58dc2c8138e028b199aa530bb34a9 {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor"} -C3L-03400.RNA-Seq.chimeric.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.chimeric.gdc_realn.bam 36844540 BAM chimeric harmonized CPTAC3 dee27a45-2585-4466-8094-ef98c267a351 34524317f0e60720fd4fbc3d39633866 {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor"} -C3L-03400.RNA-Seq.genomic.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.genomic.gdc_realn.bam 8452363970 BAM genomic harmonized CPTAC3 2949138f-db82-434c-9275-2a025e3811cf cee673a6a2b87702588ed4f47a174853 {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor"} -C3L-03400.RNA-Seq.S11_L003_R1.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R1_001.fastq.gz 3706034638 FASTQ S11_L003_R1 unaligned CPTAC3 70531ebf-08c9-4f56-aa0a-52c009c298f4 03f5b8c14d526beebd5dd2aaf5111318 {"aliquot_tag": "ALQ_bb72f6f5", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03400.RNA-Seq.S11_L003_R2.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R2_001.fastq.gz 4240652850 FASTQ S11_L003_R2 unaligned CPTAC3 642ffec8-e51b-42da-a88f-a3db6ad879e2 9bf49ac3db4759453125319b1f5ce8da {"aliquot_tag": "ALQ_bb72f6f5", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03400.RNA-Seq.transcriptome.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.transcriptome.gdc_realn.bam 10269507507 BAM transcriptome harmonized CPTAC3 606da76d-aee1-4532-90fd-4e7096553748 6f5779d3133a526108765176b838599d {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor"} -C3L-03400.WGS.N C3L-03400 GBM WGS blood_normal CPT0226220002 CPT0226220002.WholeGenome.RP-1303.bam 67662788509 BAM aligned CPTAC3 04360ecd-5fed-445e-9c1c-0964f8355df9 97a59f05b884330d03b794f9dfc9b07e {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03400.WGS.N.hg38 C3L-03400 GBM WGS blood_normal CPT0226220002 8fe75c1a-636f-4248-b8d3-63ece1e9c2fb_wgs_gdc_realn.bam 98876232389 BAM harmonized CPTAC3 27ef4fff-c92d-461f-aaf5-ab3f31c0a342 791c0d257096d7d53392611b9829f2af {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03400.WGS.T C3L-03400 GBM WGS tumor CPT0224540010 CPT0224540010.WholeGenome.RP-1303.bam 56562722769 BAM aligned CPTAC3 e9af3bff-a099-4bf8-b76f-8481a157bc55 95ce7526cabf51ab246eb76441ef8d15 {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor"} -C3L-03400.WGS.T.hg38 C3L-03400 GBM WGS tumor CPT0224540010 6e089e91-8946-4c41-9a59-c97549e0435c_wgs_gdc_realn.bam 81513667612 BAM harmonized CPTAC3 84dde002-3ddb-47de-a3c0-9b10942e48e2 7b3dcfd0c6bccd44c56a5be60d2ea6ff {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor"} -C3L-03400.WXS.N C3L-03400 GBM WXS blood_normal CPT0226220002 CPT0226220002.WholeExome.RP-1303.bam 35425436835 BAM aligned CPTAC3 a1502bd8-87a5-4a24-86ea-78dc52e4e8b7 755afc7c68d403bf42c9b3efd2c9b16d {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03400.WXS.N.hg38 C3L-03400 GBM WXS blood_normal CPT0226220002 8fe75c1a-636f-4248-b8d3-63ece1e9c2fb_wxs_gdc_realn.bam 48001197894 BAM harmonized CPTAC3 a34a5002-3d9a-434e-bc17-ff9f6f3715b2 e2b671a98f3e3341ef329103bbb8b6c2 {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal"} -C3L-03400.WXS.T C3L-03400 GBM WXS tumor CPT0224540010 CPT0224540010.WholeExome.RP-1303.bam 29226244296 BAM aligned CPTAC3 ac4dc844-e6d2-4338-8ab9-f665c7fcc403 9dd3f6ea78634f86dfee6391857ce0c0 {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor"} -C3L-03400.WXS.T.hg38 C3L-03400 GBM WXS tumor CPT0224540010 6e089e91-8946-4c41-9a59-c97549e0435c_wxs_gdc_realn.bam 40447059748 BAM harmonized CPTAC3 7f461d9c-84db-42d0-8841-ae9f188d675a b166dee1a8fe627adf0a7de912ff102d {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor"} -C3L-03405.MethArray.Green.T C3L-03405 GBM Methylation_Array tumor CPT0224600009 203220070165_R03C01_Grn.idat 13676207 IDAT Green NA CPTAC3 e0e23e13-61fd-4eae-abb7-8808bd5a59dc 9515b98b8c1a8dcbfa53ec63c17525ef {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor"} -C3L-03405.MethArray.Red.T C3L-03405 GBM Methylation_Array tumor CPT0224600009 203220070165_R03C01_Red.idat 13676207 IDAT Red NA CPTAC3 46fc17bf-9902-4ade-8444-309e2b9a1e19 08f1b26c0a586aa5628d0b883299c298 {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor"} -C3L-03405.miRNA-Seq.S35_L006_R1.T C3L-03405 GBM miRNA-Seq tumor CPT0224600006 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L006_R1_001.unaln.bam 255754624 BAM S35_L006_R1 unaligned CPTAC3 6433841e-eb0f-4d57-a640-892f9fa316f7 02b6923eab12b068beae096a7e66ebf2 {"aliquot_tag": "ALQ_bf61120d", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03405.miRNA-Seq.T.hg38 C3L-03405 GBM miRNA-Seq tumor CPT0224600006 e6b6728a-f563-4926-b61d-f68ac7450ff3_mirnaseq_gdc_realn.bam 288212005 BAM harmonized CPTAC3 c89e9b44-9f59-4b9f-8b06-efd999cafc62 9bbf785a3d7527ef971741954ce0a550 {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor"} -C3L-03405.RNA-Seq.chimeric.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.chimeric.gdc_realn.bam 40830059 BAM chimeric harmonized CPTAC3 924ee0ec-733b-4b77-af9e-e8019a360bad 44542f71c2525a464a6925f509293c12 {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor"} -C3L-03405.RNA-Seq.genomic.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.genomic.gdc_realn.bam 8607763269 BAM genomic harmonized CPTAC3 0e450538-0f66-415e-a783-7d61fc967b37 d4e9ed7b237494450605afeeb3faeb6b {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor"} -C3L-03405.RNA-Seq.S10_L003_R1.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R1_001.fastq.gz 4225515484 FASTQ S10_L003_R1 unaligned CPTAC3 9cac0fc4-002c-49e6-b009-08e3a79f147a 05c8417cd5b9f75b3d25886724dff374 {"aliquot_tag": "ALQ_bf61120d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03405.RNA-Seq.S10_L003_R2.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R2_001.fastq.gz 4668539169 FASTQ S10_L003_R2 unaligned CPTAC3 6e72bfb7-d0de-4f03-821d-673d90b9eb8c 2ae475fe406c8bd65020a7ddc77062ef {"aliquot_tag": "ALQ_bf61120d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03405.RNA-Seq.transcriptome.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.transcriptome.gdc_realn.bam 9727472388 BAM transcriptome harmonized CPTAC3 d8204bf6-7699-4b6f-a04f-13855ef90283 657a3d19603c38d89f09473455e9f604 {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor"} -C3L-03405.scRNA-Seq.S5_L002_R1.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R1_001.fastq.gz 12671364384 FASTQ S5_L002_R1 unaligned CPTAC3 43e57336-d3c7-46a8-81de-b42300b8e839 4fd6c918169df97615f47784690031b5 {"aliquot_tag": "ALQ_d610d7c3", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03405.scRNA-Seq.S5_L002_R2.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R2_001.fastq.gz 26167417692 FASTQ S5_L002_R2 unaligned CPTAC3 184382d4-821c-40b1-9f60-51bfc3802a6b 55a54e58f07cb31a4e3f66cf3018b285 {"aliquot_tag": "ALQ_d610d7c3", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03405.scRNA-Seq.T.hg38 C3L-03405 GBM scRNA-Seq tumor CPT0224600013 possorted_genome_bam.bam 36827067033 BAM harmonized CPTAC3 271662dd-63fb-4109-8e2a-d6f5bae3e1f6 fd4f85577a2bc8778e31dd9b9198da24 {"aliquot_tag": "ALQ_d610d7c3", "gdc_sample_type": "Primary Tumor"} -C3L-03405.WGS.N C3L-03405 GBM WGS blood_normal CPT0226240002 CPT0226240002.WholeGenome.RP-1303.bam 68922224835 BAM aligned CPTAC3 24756334-9a9c-4858-a1cd-7ee5372a812e fbf9adf0ab4bb762ecdc1397f5d56159 {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03405.WGS.N.hg38 C3L-03405 GBM WGS blood_normal CPT0226240002 403a82f6-1996-4dc4-807e-60dfeb23d36c_wgs_gdc_realn.bam 100015884430 BAM harmonized CPTAC3 b380a40e-9f97-46f5-b417-ab8df4fbacb5 df8da9780ef47c9e19f0fe6242260cc5 {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03405.WGS.T C3L-03405 GBM WGS tumor CPT0224600009 CPT0224600009.WholeGenome.RP-1303.bam 64505884561 BAM aligned CPTAC3 0eeb8b2a-70bb-472c-a048-fdeda1bdaf3a 0a687a12bcff23427c1ab1958f3ea397 {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor"} -C3L-03405.WGS.T.hg38 C3L-03405 GBM WGS tumor CPT0224600009 91d5eca6-731f-4bf2-9e06-c0985c9a7d05_wgs_gdc_realn.bam 93470200145 BAM harmonized CPTAC3 7ff96dc5-e933-4c93-a2f2-878cc1920047 0c7ead0151ea26a852f177b8d7fa597d {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor"} -C3L-03405.WXS.N C3L-03405 GBM WXS blood_normal CPT0226240002 CPT0226240002.WholeExome.RP-1303.bam 24907172659 BAM aligned CPTAC3 abaa12a2-462c-4114-bfdf-7eac1046fc08 2faeabde779f4d17c914891282568e52 {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03405.WXS.N.hg38 C3L-03405 GBM WXS blood_normal CPT0226240002 403a82f6-1996-4dc4-807e-60dfeb23d36c_wxs_gdc_realn.bam 33911611918 BAM harmonized CPTAC3 00aeb77c-ac81-458f-a256-936325fde6ce 2edce38fc26cadf0094cbaebda1ae79c {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal"} -C3L-03405.WXS.T C3L-03405 GBM WXS tumor CPT0224600009 CPT0224600009.WholeExome.RP-1303.bam 21839114465 BAM aligned CPTAC3 891c04b6-c846-4e3a-b218-b27846610713 328f7df2e2539ba3500eb30aa15e8d50 {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor"} -C3L-03405.WXS.T.hg38 C3L-03405 GBM WXS tumor CPT0224600009 91d5eca6-731f-4bf2-9e06-c0985c9a7d05_wxs_gdc_realn.bam 31322936502 BAM harmonized CPTAC3 01eae778-47ee-4360-8669-af17ab0b438b 3f54a0f235551595b557fd7adf6cfdeb {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor"} -C3L-03407.MethArray.Green.T C3L-03407 GBM Methylation_Array tumor CPT0190360007 203219650211_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 e6629222-bd00-4be7-918e-617b3fb939d3 bf56f99ecb9f74d0d8ac85222a478aae {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor"} -C3L-03407.MethArray.Red.T C3L-03407 GBM Methylation_Array tumor CPT0190360007 203219650211_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 73c2e41c-367f-41ea-a186-0b7851b46e2c e0aaadb5e1b080909fdfd83ab9a8f129 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor"} -C3L-03407.miRNA-Seq.S36_L004_R1.T C3L-03407 GBM miRNA-Seq tumor CPT0190360010 181219_UNC31-K00269_0173_BHYGJJBBXX_CGGAAT_S36_L004_R1_001.unaln.bam 201515266 BAM S36_L004_R1 unaligned CPTAC3 1f03add2-e921-45a8-9bd7-9c9d2fb70085 8bf65f850f0a3ff46b17138ccba4ee35 {"aliquot_tag": "ALQ_3ce6ea", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03407.miRNA-Seq.T.hg38 C3L-03407 GBM miRNA-Seq tumor CPT0190360010 98b724d6-8b97-47f6-9dff-762d539e78ad_mirnaseq_gdc_realn.bam 222895872 BAM harmonized CPTAC3 71bd7855-ff4d-4736-b8ee-45e8610da5c0 9a0ba5c8105b9f97ab797ab331896e08 {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor"} -C3L-03407.RNA-Seq.chimeric.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.chimeric.gdc_realn.bam 236977214 BAM chimeric harmonized CPTAC3 18ab21b5-0eed-412c-9abf-ac22e7450a35 f9bcfaea75e4bd9d7166e77e36866dcb {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor"} -C3L-03407.RNA-Seq.genomic.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.genomic.gdc_realn.bam 7596564006 BAM genomic harmonized CPTAC3 64ac6dd1-66c6-45af-ac9c-e1cc26fa925e a34dfa7194045373bd8aa10678f25521 {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor"} -C3L-03407.RNA-Seq.S11_L004_R1.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R1_001.fastq.gz 3311998605 FASTQ S11_L004_R1 unaligned CPTAC3 8078474f-74ce-4a21-a1c6-28c2f33c7b82 ceb3c564458688d7bad078fc6339dd3d {"aliquot_tag": "ALQ_3ce6ea", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03407.RNA-Seq.S11_L004_R2.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R2_001.fastq.gz 3485263834 FASTQ S11_L004_R2 unaligned CPTAC3 00ca5043-9ebf-4436-a321-bb9576d0723c 826f16235b280ff192af00729c49effd {"aliquot_tag": "ALQ_3ce6ea", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03407.RNA-Seq.transcriptome.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.transcriptome.gdc_realn.bam 9400170014 BAM transcriptome harmonized CPTAC3 ecda9804-4a23-43c4-b5c9-423bc03bc67e 48eec3d34f2e2256f6c4818b84efd647 {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor"} -C3L-03407.WGS.N C3L-03407 GBM WGS blood_normal CPT0191160002 CPT0191160002.WholeGenome.RP-1303.bam 64750280441 BAM aligned CPTAC3 975f974b-9217-4ab9-b951-3ceb455d88bc 9bcbfbb20a89a2a9023bad484e2712dc {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal"} -C3L-03407.WGS.N.hg38 C3L-03407 GBM WGS blood_normal CPT0191160002 4f757bbc-1252-4331-aad8-a2a73e7fd008_wgs_gdc_realn.bam 92980568150 BAM harmonized CPTAC3 fda424ce-c105-499d-b8c1-f90fee8971ac 79c2d73b6baf3b8176e4acec5637e7f2 {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal"} -C3L-03407.WGS.T C3L-03407 GBM WGS tumor CPT0190360007 CPT0190360007.WholeGenome.RP-1303.bam 74377876565 BAM aligned CPTAC3 7617d968-d289-458b-b1e6-52e8f8312d92 87f88d02b361e730052c5cf221a61871 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor"} -C3L-03407.WGS.T.hg38 C3L-03407 GBM WGS tumor CPT0190360007 03da8212-cc53-424c-9b84-3669bd1e1d25_wgs_gdc_realn.bam 112888620419 BAM harmonized CPTAC3 c12fdcd8-7fc6-44ea-b03c-772bf07d85b8 66b1877a30375bd39fddde42ca03c15d {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor"} -C3L-03407.WXS.N C3L-03407 GBM WXS blood_normal CPT0191160002 CPT0191160002.WholeExome.RP-1303.bam 23952138429 BAM aligned CPTAC3 bdba9014-198b-42e5-87d4-a9dbab9b64f4 b78627e4a2d2179e2cac58e5cdaedf12 {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal"} -C3L-03407.WXS.N.hg38 C3L-03407 GBM WXS blood_normal CPT0191160002 4f757bbc-1252-4331-aad8-a2a73e7fd008_wxs_gdc_realn.bam 32955953431 BAM harmonized CPTAC3 3c489ec2-f590-40dc-b963-c04561e2618b de8be7d894117de9f8db243cf0e6f869 {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal"} -C3L-03407.WXS.T C3L-03407 GBM WXS tumor CPT0190360007 CPT0190360007.WholeExome.RP-1303.bam 21798160503 BAM aligned CPTAC3 eb2ca344-1b8c-4932-b446-351a68535363 fb344b6e2971df33d74af5d73b2f8917 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor"} -C3L-03407.WXS.T.hg38 C3L-03407 GBM WXS tumor CPT0190360007 03da8212-cc53-424c-9b84-3669bd1e1d25_wxs_gdc_realn.bam 29549043644 BAM harmonized CPTAC3 233d032c-a42b-4b9e-afc1-d750c4c05951 bd81419b2af6b3ad0b3ca864835feb72 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor"} -C3L-03462.MethArray.Green.A C3L-03462 LUAD Methylation_Array tissue_normal CPT0190090007 203561620072_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 733b83ff-178c-4a74-893f-9977a57b1d61 3d6e3d51380faaf5bf34f129e40d6174 {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.MethArray.Green.T C3L-03462 LUAD Methylation_Array tumor CPT0190070006 203561620091_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3e662995-f6a2-4a41-967c-da468a1dde89 9bc75b87ba0e8e26ef12fab482ef2c1d {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor"} -C3L-03462.MethArray.Red.A C3L-03462 LUAD Methylation_Array tissue_normal CPT0190090007 203561620072_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 b2dc7774-97a8-4f2c-887d-fa4f319b086f 37e77e1dc52f7f46382076bfa63590ba {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.MethArray.Red.T C3L-03462 LUAD Methylation_Array tumor CPT0190070006 203561620091_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 ebe7d351-570e-4e4d-9753-3bf802e1389a c4b55fbd3c59194d1d40d7e209eef207 {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor"} -C3L-03462.miRNA-Seq.A.hg38 C3L-03462 LUAD miRNA-Seq tissue_normal CPT0190090010 9f5c34ab-2b13-421e-98b3-07e333e53ab4_mirnaseq_gdc_realn.bam 258738298 BAM harmonized CPTAC3 8e292fc5-3fdf-4fb4-9355-eb8f08c1764e 4ef615364b938ed272b41d7db56452de {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.miRNA-Seq.S15_L005_R1.T C3L-03462 LUAD miRNA-Seq tumor CPT0190070009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGAAA_S15_L005_R1_001.unaln.bam 218410953 BAM S15_L005_R1 unaligned CPTAC3 4ca8627b-a115-42dd-9458-717d9776214e 454d846a7ff92dfd7595c869fb779207 {"aliquot_tag": "ALQ_db0f3411", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03462.miRNA-Seq.S31_L007_R1.A C3L-03462 LUAD miRNA-Seq tissue_normal CPT0190090010 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTTGA_S31_L007_R1_001.unaln.bam 223935012 BAM S31_L007_R1 unaligned CPTAC3 6b3ca231-1e65-48e1-bc01-104e2df60a31 d56b376254c1ee3fbed6af842acef01f {"aliquot_tag": "ALQ_4f80395", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.miRNA-Seq.T.hg38 C3L-03462 LUAD miRNA-Seq tumor CPT0190070009 127a83eb-13c2-4660-9dbc-20e8fa5ebc26_mirnaseq_gdc_realn.bam 241571355 BAM harmonized CPTAC3 aba3eb5b-e695-4d29-8b54-a2ba660c5e4f 60b7428ecfe068b5374ec95becb13f81 {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor"} -C3L-03462.RNA-Seq.chimeric.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.chimeric.gdc_realn.bam 161126485 BAM chimeric harmonized CPTAC3 2eb5ee28-669a-4d9c-844d-7f729be2a206 32ef731824461993629aa76e9c2adcf2 {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.RNA-Seq.chimeric.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.chimeric.gdc_realn.bam 56184337 BAM chimeric harmonized CPTAC3 7cd9e87f-be28-46ee-975a-a4365d81a506 c33489deaf19e0278e74d73764f33e43 {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor"} -C3L-03462.RNA-Seq.genomic.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.genomic.gdc_realn.bam 14724923823 BAM genomic harmonized CPTAC3 51a65e2b-e28c-4716-afdd-b73c0ebbcc34 6ad72c211b25edc9c8fdd9ef399df6fc {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.RNA-Seq.genomic.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.genomic.gdc_realn.bam 14586256475 BAM genomic harmonized CPTAC3 a387addc-4689-485f-9c36-01432874cd9a 7b978837491da4e118d1c06dddfd32dc {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor"} -C3L-03462.RNA-Seq.S7_L002_R1.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R1_001.fastq.gz 5609424626 FASTQ S7_L002_R1 unaligned CPTAC3 08f42aaf-e92e-4cdb-8cad-cf7ba704a416 8dcde62436f27099681c92cc70ba3902 {"aliquot_tag": "ALQ_4f80395", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.RNA-Seq.S7_L002_R2.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R2_001.fastq.gz 6122059962 FASTQ S7_L002_R2 unaligned CPTAC3 a7e6797e-a229-4708-9d39-2b9a48c52c94 293a58593853853356cfe3445d561164 {"aliquot_tag": "ALQ_4f80395", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.RNA-Seq.S8_L002_R1.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R1_001.fastq.gz 4816010569 FASTQ S8_L002_R1 unaligned CPTAC3 ea36bf78-e9fe-46b3-90a2-9d279423087b a4e9cd1cf06ad05585b287570c56a9e6 {"aliquot_tag": "ALQ_db0f3411", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03462.RNA-Seq.S8_L002_R2.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R2_001.fastq.gz 5406571725 FASTQ S8_L002_R2 unaligned CPTAC3 b949d047-6693-4f02-b7e2-f60b42df43c7 b27320d24d77721bdab152d98162e029 {"aliquot_tag": "ALQ_db0f3411", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03462.RNA-Seq.transcriptome.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.transcriptome.gdc_realn.bam 11832418896 BAM transcriptome harmonized CPTAC3 f8cde06c-5114-4237-9bae-0218846b9faf f0fbba3f8ed896b37fbed853f16553e2 {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.RNA-Seq.transcriptome.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.transcriptome.gdc_realn.bam 11414858209 BAM transcriptome harmonized CPTAC3 c70cf8dd-f088-4e6f-8d71-b65ef323de7f d376b52d014681b9ef892cf29851f20b {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor"} -C3L-03462.WGS.N C3L-03462 LUAD WGS blood_normal CPT0191180002 CPT0191180002.WholeGenome.RP-1303.bam 57725226561 BAM aligned CPTAC3 f7466b8e-d54a-4846-a0a2-89cc219941ac 68d1c89d586dc086c0c5f44b576e3680 {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal"} -C3L-03462.WGS.N.hg38 C3L-03462 LUAD WGS blood_normal CPT0191180002 56b5fceb-9455-4d86-8bb0-42e3434f36bf_wgs_gdc_realn.bam 85245147296 BAM harmonized CPTAC3 0b99365a-116c-4b5c-ba4d-79ba135cbc28 0e7bde125b1f100511b51f993ba35ad8 {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal"} -C3L-03462.WGS.T C3L-03462 LUAD WGS tumor CPT0190070006 CPT0190070006.WholeGenome.RP-1303.bam 69800880244 BAM aligned CPTAC3 5a70f90d-0983-4704-8012-c7a74344167d 25e68bb7ef5a2b2c324a5892dca150c0 {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor"} -C3L-03462.WGS.T.hg38 C3L-03462 LUAD WGS tumor CPT0190070006 15678493-2489-4967-ad92-ec098fa647d5_wgs_gdc_realn.bam 104506273986 BAM harmonized CPTAC3 7077dd3c-e3d3-47ec-90f5-feeeedb1ad8a 2948918d5fed63903775657520981047 {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor"} -C3L-03462.WXS.A C3L-03462 LUAD WXS tissue_normal CPT0190090007 CPT0190090007.WholeExome.RP-1303.bam 19168102003 BAM aligned CPTAC3 d7a1b155-443b-4953-9778-0a2d88de705b 53c23884fdd1ec8e9a2033e1ea2bcfdb {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.WXS.A.hg38 C3L-03462 LUAD WXS tissue_normal CPT0190090007 c369743e-6b79-400a-80a9-14ed0ef12cb8_wxs_gdc_realn.bam 26462533475 BAM harmonized CPTAC3 050128a4-6dfe-4252-94dc-fb36a033a4b1 26f3c09d6740baf410ca1c735398e06f {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03462.WXS.N C3L-03462 LUAD WXS blood_normal CPT0191180002 CPT0191180002.WholeExome.RP-1303.bam 25387974024 BAM aligned CPTAC3 1ea2ee2d-b0b2-4414-919e-f31f5570b3b2 3409cd65e1ec57ea173873302953ae1b {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal"} -C3L-03462.WXS.N.hg38 C3L-03462 LUAD WXS blood_normal CPT0191180002 56b5fceb-9455-4d86-8bb0-42e3434f36bf_wxs_gdc_realn.bam 34866294039 BAM harmonized CPTAC3 ecc7cdc6-0632-4be3-b1a3-e70193029cda 9b7e9d5061b9ebe3b26bdee36f9c3d4b {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal"} -C3L-03462.WXS.T C3L-03462 LUAD WXS tumor CPT0190070006 CPT0190070006.WholeExome.RP-1303.bam 23638469331 BAM aligned CPTAC3 27a38e2d-d0d7-4e47-ad91-1e0d83e78890 79207aefc8b2a08eee67dad8de2906be {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor"} -C3L-03462.WXS.T.hg38 C3L-03462 LUAD WXS tumor CPT0190070006 15678493-2489-4967-ad92-ec098fa647d5_wxs_gdc_realn.bam 32871991841 BAM harmonized CPTAC3 b6ea39b9-3905-4a69-a15f-d53196972172 cf4baeddeedefeea408311297842291a {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor"} -C3L-03463.MethArray.Green.A C3L-03463 LUAD Methylation_Array tissue_normal CPT0190020006 203561620052_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 38ed4975-76ee-4483-bb30-deda0208fca3 257e077960739536d6cf3d358f9363aa {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.MethArray.Green.T C3L-03463 LUAD Methylation_Array tumor CPT0190010006 203561620095_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b9ca666e-0097-4d0b-97df-f14c695d9e58 26d6613d0b8a63f54facc0bfb68c4ff8 {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor"} -C3L-03463.MethArray.Red.A C3L-03463 LUAD Methylation_Array tissue_normal CPT0190020006 203561620052_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 bf2ec8a5-468a-44a5-9f1b-a06ac8a702ec c8a5acf7ad1e2d1d0a48235a7f0e3c3e {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.MethArray.Red.T C3L-03463 LUAD Methylation_Array tumor CPT0190010006 203561620095_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 53873af0-201a-4357-bcec-95ff3ff0066c 61b5a44279798188f52536e8f153e06c {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor"} -C3L-03463.miRNA-Seq.A.hg38 C3L-03463 LUAD miRNA-Seq tissue_normal CPT0190020009 d2000a12-cd1e-41e8-aba7-f02b0144e0e0_mirnaseq_gdc_realn.bam 291291644 BAM harmonized CPTAC3 307cf366-d5d2-4db6-b46b-a83e7019fd74 4b445f69f8bcedf32d095a3e8180963b {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.miRNA-Seq.S14_L005_R1.T C3L-03463 LUAD miRNA-Seq tumor CPT0190010009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTCCGC_S14_L005_R1_001.unaln.bam 185978130 BAM S14_L005_R1 unaligned CPTAC3 14b59328-100a-4ee4-8256-d50eb3d7c6a9 524799ab1484188cef9fc557faed750a {"aliquot_tag": "ALQ_544fc1b1", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03463.miRNA-Seq.S30_L007_R1.A C3L-03463 LUAD miRNA-Seq tissue_normal CPT0190020009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGATC_S30_L007_R1_001.unaln.bam 249283482 BAM S30_L007_R1 unaligned CPTAC3 9e7abc66-65e0-45b1-85fa-956d527ea02e f198100be2920053f56562f1d7c0a9f5 {"aliquot_tag": "ALQ_13efbb61", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.miRNA-Seq.T.hg38 C3L-03463 LUAD miRNA-Seq tumor CPT0190010009 6ece8972-033d-4694-9d03-91bd99b0532d_mirnaseq_gdc_realn.bam 207612206 BAM harmonized CPTAC3 6cd2eccb-37b1-469d-8b08-3c21754667e2 67dd92a60d951fa9b798001bd3949918 {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor"} -C3L-03463.RNA-Seq.chimeric.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.chimeric.gdc_realn.bam 117572107 BAM chimeric harmonized CPTAC3 526aa765-f156-44cc-833b-010314e044da 9830b86c8957411fcdae7e2b110e4ccb {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.RNA-Seq.chimeric.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.chimeric.gdc_realn.bam 33387159 BAM chimeric harmonized CPTAC3 24ebd95b-bc92-43f1-9e7c-e497d4bc3b64 67126d77ab489a2675b2266f403b0e4e {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor"} -C3L-03463.RNA-Seq.genomic.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.genomic.gdc_realn.bam 7627666417 BAM genomic harmonized CPTAC3 00357488-7ef6-471b-be2a-32cd1d9b5195 085fa3dcf7eb5a38477a63da7ef75b42 {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.RNA-Seq.genomic.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.genomic.gdc_realn.bam 15108527066 BAM genomic harmonized CPTAC3 462dfd62-3e26-4da8-a725-f11ed13c1af6 f3c249402991805dbf7a71ec4f657b35 {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor"} -C3L-03463.RNA-Seq.S22_L006_R1.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R1_001.fastq.gz 3014580074 FASTQ S22_L006_R1 unaligned CPTAC3 3a1d08ac-7208-4ae2-a1bb-204516c40043 a05588a485a979afae3a732a18fcdf68 {"aliquot_tag": "ALQ_13efbb61", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.RNA-Seq.S22_L006_R2.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R2_001.fastq.gz 3197654267 FASTQ S22_L006_R2 unaligned CPTAC3 a08b3171-0932-4601-b7d0-cbab3d9c8b41 82608727fd1cfa99bfceefe03a113b09 {"aliquot_tag": "ALQ_13efbb61", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.RNA-Seq.S6_L002_R1.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R1_001.fastq.gz 4344189479 FASTQ S6_L002_R1 unaligned CPTAC3 8af7daf9-d63a-4c4d-b9f9-b298da23bcd5 97ee89eff24c8808aaf0c266987ed85a {"aliquot_tag": "ALQ_544fc1b1", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03463.RNA-Seq.S6_L002_R2.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R2_001.fastq.gz 5021960605 FASTQ S6_L002_R2 unaligned CPTAC3 dadcbb2c-584f-4847-92a0-2bfa844266f2 a9a5c7232f05b424e71c93fbed089acd {"aliquot_tag": "ALQ_544fc1b1", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03463.RNA-Seq.transcriptome.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.transcriptome.gdc_realn.bam 6463037656 BAM transcriptome harmonized CPTAC3 733fe733-6a7a-4c98-b0a6-29ea599abbd9 518142e75ad850826aaa8c8a0885513a {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.RNA-Seq.transcriptome.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.transcriptome.gdc_realn.bam 10133494128 BAM transcriptome harmonized CPTAC3 3c2b36ac-21f6-41a6-89a7-a4addc5a1cac aa692708fab33a537791113d278002fc {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor"} -C3L-03463.WGS.N C3L-03463 LUAD WGS blood_normal CPT0191080002 CPT0191080002.WholeGenome.RP-1303.bam 58889584047 BAM aligned CPTAC3 b1f70092-d513-4a8c-9fac-4c32d7dd0b38 028d3afe0fd173109561021a4c80756e {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-03463.WGS.N.hg38 C3L-03463 LUAD WGS blood_normal CPT0191080002 71c20dba-7e3c-48a7-bb01-34619832fddd_wgs_gdc_realn.bam 86909473238 BAM harmonized CPTAC3 1f0133de-83c3-4f1a-9759-9f2a4ca3ded1 9499d8ef40e13fda7b44956d94d1fa17 {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-03463.WGS.T C3L-03463 LUAD WGS tumor CPT0190010006 CPT0190010006.WholeGenome.RP-1303.bam 55074996383 BAM aligned CPTAC3 1189a10c-71c9-4540-87e6-d33671e38849 1e7a6f77b16c06bcc81d5d75b31cfb2e {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor"} -C3L-03463.WGS.T.hg38 C3L-03463 LUAD WGS tumor CPT0190010006 de661d12-3540-4513-ab51-8a8eacc33f03_wgs_gdc_realn.bam 80340748716 BAM harmonized CPTAC3 f75753f6-336d-4dda-aca5-42a7a45f4cb0 ab388f31ea2f2e649a567130045501c8 {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor"} -C3L-03463.WXS.A C3L-03463 LUAD WXS tissue_normal CPT0190020006 CPT0190020006.WholeExome.RP-1303.bam 21534843357 BAM aligned CPTAC3 c756b128-cb43-41cb-9bb3-3ee0d8d6e4c2 e9f11e67b60527c7df56945fb4115d48 {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.WXS.A.hg38 C3L-03463 LUAD WXS tissue_normal CPT0190020006 5c77d974-0150-4d5c-8a5d-88f7ed28c788_wxs_gdc_realn.bam 29792777351 BAM harmonized CPTAC3 6c8b2548-0255-4413-aff6-769edc65dc64 0c31c0a0e2274a0781861bbcf2a945ad {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03463.WXS.N C3L-03463 LUAD WXS blood_normal CPT0191080002 CPT0191080002.WholeExome.RP-1303.bam 26497080936 BAM aligned CPTAC3 e069868e-382a-4c13-9833-60b9efa1eeeb 593f7cba2faffd0b153c520bb3ffb7c6 {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-03463.WXS.N.hg38 C3L-03463 LUAD WXS blood_normal CPT0191080002 71c20dba-7e3c-48a7-bb01-34619832fddd_wxs_gdc_realn.bam 36683316726 BAM harmonized CPTAC3 671f8fd0-8de5-45e8-889f-480694a1eb6a bbb083a9f99aeb5ad86304af3c0fe1bd {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-03463.WXS.T C3L-03463 LUAD WXS tumor CPT0190010006 CPT0190010006.WholeExome.RP-1303.bam 23111168509 BAM aligned CPTAC3 f837cd7f-f0bb-43c6-8ba7-37b1dcfdf4bf 0cfd9d31748a66ff492a34d2ec0a518e {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor"} -C3L-03463.WXS.T.hg38 C3L-03463 LUAD WXS tumor CPT0190010006 de661d12-3540-4513-ab51-8a8eacc33f03_wxs_gdc_realn.bam 31711426007 BAM harmonized CPTAC3 ec373367-df0f-4ee9-9659-e46a271d8aa5 c18b686f74ec4cc4d589943a67d428dc {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor"} -C3L-03467.MethArray.Green.T C3L-03467 UCEC Methylation_Array tumor CPT0188610006 203561450099_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3f72bd38-3a50-4ad2-b75c-3aabfefb6477 0522a18cd677e61f9dc2309795116c8c {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor"} -C3L-03467.MethArray.Red.T C3L-03467 UCEC Methylation_Array tumor CPT0188610006 203561450099_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 f4f05099-b439-4a8d-b44d-44c1d086d04f 8d28f582bb3b8c399214ac2995dffe75 {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor"} -C3L-03467.miRNA-Seq.S28_L004_R1.T C3L-03467 UCEC miRNA-Seq tumor CPT0188610009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAAAAG_S28_L004_R1_001.unaln.bam 227494141 BAM S28_L004_R1 unaligned CPTAC3 416fd5a5-b3a3-4bac-b836-1da8497cbe94 03444859f8aff21379a523ab28ffebab {"aliquot_tag": "ALQ_7d536c55", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03467.miRNA-Seq.T.hg38 C3L-03467 UCEC miRNA-Seq tumor CPT0188610009 605d206a-e3f9-4f00-a89d-c9e865abf71e_mirnaseq_gdc_realn.bam 255767787 BAM harmonized CPTAC3 cd0adf42-ee65-463f-bb37-e43ef891e69c 5eb5aeb688686932b62bcc4e49391169 {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.chimeric.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.chimeric.gdc_realn.bam 35349095 BAM chimeric harmonized CPTAC3 b1c2081e-bf41-431b-a030-aa421f9483ce 806591c6fa2397eb4d3abed597e252ac {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.chimeric.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.chimeric.gdc_realn.bam 223393706 BAM chimeric harmonized CPTAC3 9ee0d27b-cfc6-41d9-bf50-9efcacb9d498 3dfb0860da34cf47422a2760043d0707 {"aliquot_tag": "ALQ_570c2a6c", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.genomic.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.genomic.gdc_realn.bam 8262495919 BAM genomic harmonized CPTAC3 ea61c716-3486-4179-9d32-4945dc4abf29 f59080570022d1b749e9998987f104d2 {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.genomic.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.genomic.gdc_realn.bam 8351470314 BAM genomic harmonized CPTAC3 b5e2f273-8de0-409d-a6ab-6277b526ad35 428a331d5e9ee08bc5e324368e9d6868 {"aliquot_tag": "ALQ_570c2a6c", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.S16_L004_R1.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R1_001.fastq.gz 3894724405 FASTQ S16_L004_R1 unaligned CPTAC3 400fefc2-8e91-4953-b8e0-d1bdcf30252b c4a64b89e6ea62379158367240fb778e {"aliquot_tag": "ALQ_7d536c55", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.S16_L004_R2.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R2_001.fastq.gz 4436200395 FASTQ S16_L004_R2 unaligned CPTAC3 30c268b4-b8d7-463a-8ec2-4f70a9d6eca4 c2cc34260905972bc3f39021a7aad018 {"aliquot_tag": "ALQ_7d536c55", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.S63_R1.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R1_001.fastq.gz 4912189381 FASTQ S63_R1 unaligned CPTAC3 e7b51a2e-57df-4ccd-bbcc-1dfeaf777b48 f4388c8c876ff2a4973a562905b101f6 {"aliquot_tag": "ALQ_570c2a6c", "sample": "S63", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.S63_R2.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R2_001.fastq.gz 5079463116 FASTQ S63_R2 unaligned CPTAC3 959367d0-4854-4701-b965-aa36f6e689ef 142c58469ecf8c25f3270deb5bb1feef {"aliquot_tag": "ALQ_570c2a6c", "sample": "S63", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.transcriptome.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.transcriptome.gdc_realn.bam 9596940236 BAM transcriptome harmonized CPTAC3 c97bf175-d3a3-4c5e-8e2d-3e356f258423 5e43aec113970eebf40c0f9f3e716704 {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor"} -C3L-03467.RNA-Seq.transcriptome.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.transcriptome.gdc_realn.bam 3947678671 BAM transcriptome harmonized CPTAC3 a7d5fc48-76f2-4c31-9e56-056ee77c55c5 d5c81dd27938202fd1e1103927746687 {"aliquot_tag": "ALQ_570c2a6c", "gdc_sample_type": "Primary Tumor"} -C3L-03467.WGS.N C3L-03467 UCEC WGS blood_normal CPT0183190002 CPT0183190002.WholeGenome.RP-1303.bam 63428991227 BAM aligned CPTAC3 bcd793a1-0aab-4892-b2f1-1dc1ebb4938e 393c75247dabe8be79bd72f2734e9531 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03467.WGS.N.hg38 C3L-03467 UCEC WGS blood_normal CPT0183190002 71869d46-d631-4c9f-b9b6-a718ea06724b_wgs_gdc_realn.bam 94192937562 BAM harmonized CPTAC3 e3de90da-a5bc-4515-9d79-3f6cc188dffd 5d06e61506a6c76bbe3bc88407e028c3 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03467.WGS.T C3L-03467 UCEC WGS tumor CPT0188610006 CPT0188610006.WholeGenome.RP-1303.bam 73984772200 BAM aligned CPTAC3 baba5abc-2757-4c63-995b-26d14e441c18 a2945fadf8d7ff8c748b998458043cae {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor"} -C3L-03467.WGS.T.hg38 C3L-03467 UCEC WGS tumor CPT0188610006 2bd24eb4-3bd5-4de0-a870-9e3deb00b045_wgs_gdc_realn.bam 110950448360 BAM harmonized CPTAC3 6dbae026-e720-4d69-b088-32bdd1f26988 898b0835b671b09a20a8eb73b111e85a {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor"} -C3L-03467.WXS.N C3L-03467 UCEC WXS blood_normal CPT0183190002 CPT0183190002.WholeExome.RP-1303.bam 25545707125 BAM aligned CPTAC3 d34b21ef-973f-4ad1-adbf-23e95202ae86 e2c3ad8258ab52133cd2116abf9d0bd1 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03467.WXS.N.hg38 C3L-03467 UCEC WXS blood_normal CPT0183190002 71869d46-d631-4c9f-b9b6-a718ea06724b_wxs_gdc_realn.bam 34699611206 BAM harmonized CPTAC3 0392e112-504b-44ce-89da-b59b56c76388 32c4ea8775b8cbdd0a5f17e00f7d1fd7 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03467.WXS.T C3L-03467 UCEC WXS tumor CPT0188610006 CPT0188610006.WholeExome.RP-1303.bam 23879525177 BAM aligned CPTAC3 29d7a969-ccf4-4641-ae79-5f0693ce3136 47fa162b20738239da6e802ea57de8ab {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor"} -C3L-03467.WXS.T.hg38 C3L-03467 UCEC WXS tumor CPT0188610006 2bd24eb4-3bd5-4de0-a870-9e3deb00b045_wxs_gdc_realn.bam 32652612812 BAM harmonized CPTAC3 6e033d20-aa62-4b5c-b0b5-53c814dbfb97 ecd9168114f01a22e6294488e48da761 {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor"} -C3L-03491.MethArray.Green.Tbm C3L-03491 AML Methylation_Array tumor_bone_marrow CPT0201160002 203561450027_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b00d510f-2720-4380-9729-1220104da670 edae4b35bfd9a4d8006abc226a725fb6 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.MethArray.Red.Tbm C3L-03491 AML Methylation_Array tumor_bone_marrow CPT0201160002 203561450027_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 a883c10f-aed8-473c-bc80-2a7a6c31c47b 0e9050502ed655a1b439ced086f72b86 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.miRNA-Seq.S31_L002_R1.Tbm C3L-03491 AML miRNA-Seq tumor_bone_marrow CPT0201240002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACGAT_S31_L002_R1_001.unaln.bam 199409090 BAM S31_L002_R1 unaligned CPTAC3 eb72124c-12f7-4b86-baaa-4bcdd9b17b9c fa43751bc1ed6957fc2e8322add0ac45 {"aliquot_tag": "ALQ_c6001a18", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.miRNA-Seq.Tbm.hg38 C3L-03491 AML miRNA-Seq tumor_bone_marrow CPT0201240002 60c9fa49-457c-4d32-92a3-beadc022622d_mirnaseq_gdc_realn.bam 222877411 BAM harmonized CPTAC3 b3481da4-bb81-4a7f-adbc-a34ce42f7120 4200e90695a6e38cf211362e539c30d8 {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.RNA-Seq.chimeric.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.chimeric.gdc_realn.bam 35020710 BAM chimeric harmonized CPTAC3 8683b422-8132-47b1-8b52-2fb52b0d7803 4eaebb6a1c03914558bc7854c3c71e45 {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.RNA-Seq.genomic.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.genomic.gdc_realn.bam 9449164693 BAM genomic harmonized CPTAC3 03274a8d-2a28-42a6-9783-d523d0f9926a 38f94071c9aa961b888b545284492f98 {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.RNA-Seq.S3_L007_R1.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R1_001.fastq.gz 4655695385 FASTQ S3_L007_R1 unaligned CPTAC3 b4ab375f-c8ff-4016-8999-bc1864a9cb8f 914d7a0684fa0ce73b11197eb558f6a6 {"aliquot_tag": "ALQ_c6001a18", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.RNA-Seq.S3_L007_R2.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R2_001.fastq.gz 4875951370 FASTQ S3_L007_R2 unaligned CPTAC3 f8b0ee43-6b6c-44ed-af83-ad31191765a6 d1324202427d1d451e5b0bd4524c44c6 {"aliquot_tag": "ALQ_c6001a18", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.RNA-Seq.transcriptome.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.transcriptome.gdc_realn.bam 10040901775 BAM transcriptome harmonized CPTAC3 c03e8eba-4538-4385-a82a-96b685f318cb 98590e29a1e5e1b2e6dfdf317615380d {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002_1 CPT0201260002_1.WholeGenome.RP-1303.bam 66764773211 BAM aligned CPTAC3 fe742c91-96a7-4183-9ee1-d8ddcad6430f f2623d88a46a9cfacbdaba2be0f947be {"aliquot_tag": "ALQ_c5c2e554", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002 CPT0201260002.WholeGenome.RP-1303.bam 28153730545 BAM aligned CPTAC3 1f5c76aa-379c-48ae-80ca-9096eab3a70b 893db18c95bc1edae49d9d03dd54d94c {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03491.WGS.Nbc.hg38 C3L-03491 AML WGS buccal_normal CPT0201260002_1 14d1a6aa-e85e-44de-932b-e4a270c8d1da_wgs_gdc_realn.bam 220987048218 BAM harmonized CPTAC3 0ae4c8c0-bc44-4cbe-a3c3-04f845701bfb 5edb48dd4f2104442f3461ca557b8459 {"aliquot_tag": "ALQ_c5c2e554", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03491.WGS.Nbc.hg38 C3L-03491 AML WGS buccal_normal CPT0201260002 1ff3c330-46ce-47a5-b4d0-c54341f4f7a5_wgs_gdc_realn.bam 38834048412 BAM harmonized CPTAC3 5151bfab-e478-4666-a7d5-91cc71758983 7bc6ce6713b05d3a23f678caeede08ce {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03491.WGS.Tbm C3L-03491 AML WGS tumor_bone_marrow CPT0201160002 CPT0201160002.WholeGenome.RP-1303.bam 94166755555 BAM aligned CPTAC3 2678eb89-1dbf-4b9b-bd5d-88d8022848bf 82150d8e80f03d75e25baae7d763e7b5 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.WGS.Tbm.hg38 C3L-03491 AML WGS tumor_bone_marrow CPT0201160002 5b8efbc5-c97f-4232-8b67-88fb0a71d5df_wgs_gdc_realn.bam 139513334059 BAM harmonized CPTAC3 42b8cc51-9a6d-47ac-b02d-32d608a179cd ba581e635fced7d6ce9a16fa47ca4f1f {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.WXS.Nbc C3L-03491 AML WXS buccal_normal CPT0201260002 CPT0201260002.WholeExome.RP-1303.bam 28153730608 BAM aligned CPTAC3 1b86980a-8080-4bc1-a015-7fea91d42600 cf56174fabf75da17ec5e6c95feee32b {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03491.WXS.Nbc.hg38 C3L-03491 AML WXS buccal_normal CPT0201260002 1ff3c330-46ce-47a5-b4d0-c54341f4f7a5_wxs_gdc_realn.bam 38867907138 BAM harmonized CPTAC3 30f741cb-008a-44cd-9d8f-3a51ab85cb6b 81ac74a2404f8643204e0d81655173ac {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03491.WXS.Tbm C3L-03491 AML WXS tumor_bone_marrow CPT0201160002 CPT0201160002.WholeExome.RP-1303.bam 26139289699 BAM aligned CPTAC3 a0c7b92a-ac1c-4058-9f91-e958befe25b6 662259a53bb11012f8c6004d7bf09244 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03491.WXS.Tbm.hg38 C3L-03491 AML WXS tumor_bone_marrow CPT0201160002 5b8efbc5-c97f-4232-8b67-88fb0a71d5df_wxs_gdc_realn.bam 36851485019 BAM harmonized CPTAC3 dc2ade4a-0f50-4fe1-8616-b77def9db25a 1b4352a4292436fec3272b0ffb97dbe3 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.MethArray.Green.Tbm C3L-03493 AML Methylation_Array tumor_bone_marrow CPT0201410002 203561450114_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 70996bc6-4d11-4403-a5ce-4e52022868bc f7180bfdcfb9f95b3eaee181da67877c {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.MethArray.Red.Tbm C3L-03493 AML Methylation_Array tumor_bone_marrow CPT0201410002 203561450114_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 400791ab-5298-462c-a709-fb2be174d675 e6f660fc96cb0e7d8fe981e78736f529 {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.miRNA-Seq.S32_L002_R1.Tbm C3L-03493 AML miRNA-Seq tumor_bone_marrow CPT0201490002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACTCA_S32_L002_R1_001.unaln.bam 224783467 BAM S32_L002_R1 unaligned CPTAC3 0f15ca4f-637f-478f-afe9-adc199c3a949 b927484d62dd8a649d5b640709c7a31f {"aliquot_tag": "ALQ_e8c93db4", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.miRNA-Seq.Tbm.hg38 C3L-03493 AML miRNA-Seq tumor_bone_marrow CPT0201490002 69f74ab6-b617-4442-a217-2ce8682abed0_mirnaseq_gdc_realn.bam 249112097 BAM harmonized CPTAC3 d14416c0-8926-4e92-b2bd-3325e03ee23b f1287e55048be91d5b14777e3f20f5e3 {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.RNA-Seq.chimeric.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.chimeric.gdc_realn.bam 27355043 BAM chimeric harmonized CPTAC3 1b4f566b-dc99-4f5c-80e3-97f893f309cd 6dcddb392d990bf37a3b3653d85d04b6 {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.RNA-Seq.genomic.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.genomic.gdc_realn.bam 13431887116 BAM genomic harmonized CPTAC3 97253c3c-0468-4c34-b4e6-e6b478aaca7f 6062ef20bc8cc33c21a2c3f32f8a313d {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.RNA-Seq.S4_L007_R1.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R1_001.fastq.gz 4136869861 FASTQ S4_L007_R1 unaligned CPTAC3 4f44b8ed-24b0-4cd8-88d8-932b4d084bb7 0114b390b94b1789f8f11c44f67640e7 {"aliquot_tag": "ALQ_e8c93db4", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.RNA-Seq.S4_L007_R2.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R2_001.fastq.gz 4426720000 FASTQ S4_L007_R2 unaligned CPTAC3 fdaee277-9884-48eb-94e4-08462dcac691 0984e2672b2188d17f182f57db30124a {"aliquot_tag": "ALQ_e8c93db4", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.RNA-Seq.transcriptome.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.transcriptome.gdc_realn.bam 8870801427 BAM transcriptome harmonized CPTAC3 98acafd8-8fcd-43c5-9a99-eabaf66159c1 e14831ca6fdd4fd06be715f46ba10cd5 {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.WGS.Nbc C3L-03493 AML WGS buccal_normal CPT0201510002 CPT0201510002.WholeGenome.RP-1303.bam 80451513582 BAM aligned CPTAC3 bc0f930f-56b7-4f29-8602-6b73cf19abe3 d2603b6a461f4ba6df6716755bb7f8d9 {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03493.WGS.Nbc.hg38 C3L-03493 AML WGS buccal_normal CPT0201510002 7f96e108-e097-4c20-a1c9-685d67dd2a72_wgs_gdc_realn.bam 120593417529 BAM harmonized CPTAC3 a76f4c04-d156-48ae-a49e-59200fbe2315 9b1b7cbb980d061e2af610a669197449 {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03493.WGS.Tbm C3L-03493 AML WGS tumor_bone_marrow CPT0201410002 CPT0201410002.WholeGenome.RP-1303.bam 89642061229 BAM aligned CPTAC3 af3ecb23-5a09-4b3e-9f10-50f8805885a3 ce3148a5916a6f37271e09848959f41b {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.WGS.Tbm.hg38 C3L-03493 AML WGS tumor_bone_marrow CPT0201410002 3fc6dd30-324a-4763-a721-669f4a10a441_wgs_gdc_realn.bam 133601679285 BAM harmonized CPTAC3 690c7e00-d487-4d12-973f-7a0fa1e94eb4 b4c74ec0171ed4987baa6536d312a604 {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.WXS.Nbc C3L-03493 AML WXS buccal_normal CPT0201510002 CPT0201510002.WholeExome.RP-1303.bam 26442457792 BAM aligned CPTAC3 d19b916f-f174-4191-952b-182c574cc2e2 15bd0fefeb36409584d4259ba6eaa15b {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03493.WXS.Nbc.hg38 C3L-03493 AML WXS buccal_normal CPT0201510002 7f96e108-e097-4c20-a1c9-685d67dd2a72_wxs_gdc_realn.bam 36307756921 BAM harmonized CPTAC3 2b57bf62-bfa7-4f9f-a2f5-985fd8b85e32 667ab603bd0b692f560550c3c7942cb6 {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03493.WXS.Tbm C3L-03493 AML WXS tumor_bone_marrow CPT0201410002 CPT0201410002.WholeExome.RP-1303.bam 28804971476 BAM aligned CPTAC3 4c1b5bd4-206b-4ad3-9404-17dd4fb42110 7f8149d549b0d026f872b5abbb2a54ab {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03493.WXS.Tbm.hg38 C3L-03493 AML WXS tumor_bone_marrow CPT0201410002 3fc6dd30-324a-4763-a721-669f4a10a441_wxs_gdc_realn.bam 40080658399 BAM harmonized CPTAC3 7833029e-f8e7-4481-9b5d-46141e8ba4b1 51217ac09d4e6c2f68e55c7a14cde22a {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.MethArray.Green.Tbm C3L-03496 AML Methylation_Array tumor_bone_marrow CPT0230700002 203561620053_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a20ab297-ee1c-4f89-b426-5c4ebb0e65af f414d6f73c2f6b7a1d9c5dbf09dc1590 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.MethArray.Red.Tbm C3L-03496 AML Methylation_Array tumor_bone_marrow CPT0230700002 203561620053_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6bdef76b-ae7e-4c27-854b-1eb3d324be26 c4bf3cb2e2e4deba00eba1e3dcc55829 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.miRNA-Seq.S35_L002_R1.Tbm C3L-03496 AML miRNA-Seq tumor_bone_marrow CPT0230710002 190508_UNC31-K00269_0215_BH7FYKBBXY_CATTTT_S35_L002_R1_001.unaln.bam 210696724 BAM S35_L002_R1 unaligned CPTAC3 f25ce087-7ddb-48fb-a185-7f06b9a74d6d e8c81d4a98bd3d2f9d360dc456e61c50 {"aliquot_tag": "ALQ_76d5088c", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.miRNA-Seq.Tbm.hg38 C3L-03496 AML miRNA-Seq tumor_bone_marrow CPT0230710002 c14fdb09-b7f8-4192-b468-9747fabe7aeb_mirnaseq_gdc_realn.bam 230575342 BAM harmonized CPTAC3 11806f70-f8b5-4709-8233-3bf55b710986 bb99c8c5b1691aa38ed3de0b12c58f03 {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.RNA-Seq.chimeric.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.chimeric.gdc_realn.bam 31204449 BAM chimeric harmonized CPTAC3 18f59efc-3e0d-487e-993c-f9ccf615ada2 b601e10d110f1a9f72b328c83e1b15bf {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.RNA-Seq.genomic.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.genomic.gdc_realn.bam 8192672533 BAM genomic harmonized CPTAC3 15c9e787-8f22-4abe-bf78-f344a4ea4990 de3ba9a3fb0200f7e46b7bfc465d859e {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.RNA-Seq.S23_L008_R1.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R1_001.fastq.gz 4117117079 FASTQ S23_L008_R1 unaligned CPTAC3 1d6edd93-fa5c-4279-9c3e-4581c8ac3b98 b4a6ba41ecf10f4d50945c6715a83a9c {"aliquot_tag": "ALQ_76d5088c", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.RNA-Seq.S23_L008_R2.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R2_001.fastq.gz 4606872181 FASTQ S23_L008_R2 unaligned CPTAC3 8f3698ca-efbf-4bda-aa48-9f4a69f13208 300f44e68644b6162a97c5047f753b47 {"aliquot_tag": "ALQ_76d5088c", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.RNA-Seq.transcriptome.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.transcriptome.gdc_realn.bam 10971623951 BAM transcriptome harmonized CPTAC3 dead9860-6ddb-4690-973b-2d548561659a 1bcaa0366e8ec42d46678d83547654a1 {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.WGS.Nbc C3L-03496 AML WGS buccal_normal CPT0230800001 CPT0230800001.WholeGenome.RP-1303.bam 71770193050 BAM aligned CPTAC3 03c1b7de-490b-4ea9-a784-fda04b701045 108931836f86f32741f03d55875ff330 {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03496.WGS.Nbc.hg38 C3L-03496 AML WGS buccal_normal CPT0230800001 60e4af64-58be-46eb-a31d-33af26cc948f_wgs_gdc_realn.bam 106774664814 BAM harmonized CPTAC3 e28d6175-4ee7-497c-a49d-712b85f10815 b51f50ecb75e2da64bdb87acdd55e040 {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03496.WGS.Tbm C3L-03496 AML WGS tumor_bone_marrow CPT0230700002 CPT0230700002.WholeGenome.RP-1303.bam 56789681958 BAM aligned CPTAC3 1dec89be-07a5-406a-8e22-f3fcd995525f 9069fbd7160cf485fc4403a688f5ec0b {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.WGS.Tbm.hg38 C3L-03496 AML WGS tumor_bone_marrow CPT0230700002 2ecad3ef-5282-4924-92d2-1c1e205967d5_wgs_gdc_realn.bam 83950980290 BAM harmonized CPTAC3 3b7cb468-6327-4090-a75e-d332304d6a51 ffbc39f1228ed247686cb4b3bb289336 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.WXS.Nbc C3L-03496 AML WXS buccal_normal CPT0230800001 CPT0230800001.WholeExome.RP-1303.bam 27934910763 BAM aligned CPTAC3 098e5ea0-a328-49d2-8e1c-268963ba4b4f 52de285831d817f3a9448f6486cc84ec {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03496.WXS.Nbc.hg38 C3L-03496 AML WXS buccal_normal CPT0230800001 60e4af64-58be-46eb-a31d-33af26cc948f_wxs_gdc_realn.bam 38588245794 BAM harmonized CPTAC3 278c38d9-9ca8-4c92-80cc-936a7d8f85d0 858e83630a861b1391c01fc14cb88442 {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03496.WXS.Tbm C3L-03496 AML WXS tumor_bone_marrow CPT0230700002 CPT0230700002.WholeExome.RP-1303.bam 23549688964 BAM aligned CPTAC3 403c0eaa-af59-44df-9918-62a50b3bb667 36bb0f9e4cc2cbac4d46e25028e34fd2 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03496.WXS.Tbm.hg38 C3L-03496 AML WXS tumor_bone_marrow CPT0230700002 2ecad3ef-5282-4924-92d2-1c1e205967d5_wxs_gdc_realn.bam 33219150393 BAM harmonized CPTAC3 18b9610c-7a64-44f9-b3e8-1bfaf0febd8e a53664c388255d8d27e3fb894b1f1011 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.MethArray.Green.Tbm C3L-03497 AML Methylation_Array tumor_bone_marrow CPT0230630002 203561450054_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cfc21bc1-acd9-4690-a9a7-37bcc6f3c712 22fb6b91f2d8d63a5d1c92959e8a1ebb {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.MethArray.Red.Tbm C3L-03497 AML Methylation_Array tumor_bone_marrow CPT0230630002 203561450054_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 210aca49-9a20-4fe1-8918-d62e8bbee628 a60f5414b9d9b16241ceec72e754b41d {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.miRNA-Seq.S34_L002_R1.Tbm C3L-03497 AML miRNA-Seq tumor_bone_marrow CPT0230640002 190508_UNC31-K00269_0215_BH7FYKBBXY_CATGGC_S34_L002_R1_001.unaln.bam 189795844 BAM S34_L002_R1 unaligned CPTAC3 de354781-b2f8-47f2-9ba6-ec57bd73e5a1 9afcb49fa60b6e5c58a484375a591586 {"aliquot_tag": "ALQ_75695459", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.miRNA-Seq.Tbm.hg38 C3L-03497 AML miRNA-Seq tumor_bone_marrow CPT0230640002 f20277ed-877f-4d23-b017-682932ca90d9_mirnaseq_gdc_realn.bam 211905142 BAM harmonized CPTAC3 48ec0475-2d92-432a-8a7b-c38eb090f23f 7bbb2c44afd0b0cb255c5c8ba0036f5c {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.RNA-Seq.chimeric.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.chimeric.gdc_realn.bam 36687614 BAM chimeric harmonized CPTAC3 a1dc26a7-ab7f-45cd-a5a2-4d03368046f6 915fa2961973e1c81407077f77fd57fc {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.RNA-Seq.genomic.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.genomic.gdc_realn.bam 8669792161 BAM genomic harmonized CPTAC3 25cbe564-c0d4-4b30-80c4-ac867a4e3b14 4a02a5381a20ab2d0f84e67427c682de {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.RNA-Seq.S25_L008_R1.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R1_001.fastq.gz 4217899145 FASTQ S25_L008_R1 unaligned CPTAC3 be502fb7-05dd-4427-836c-f87cbd41f18b 32c931e29ce4d5c21f70519e72864d69 {"aliquot_tag": "ALQ_75695459", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.RNA-Seq.S25_L008_R2.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R2_001.fastq.gz 4855714135 FASTQ S25_L008_R2 unaligned CPTAC3 d452cd4c-f793-4b18-a675-b58f92cc384a 9572ca040fa95914d758e3655e8c1c66 {"aliquot_tag": "ALQ_75695459", "sample": "S25", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.RNA-Seq.transcriptome.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.transcriptome.gdc_realn.bam 11199735671 BAM transcriptome harmonized CPTAC3 2ad0618c-0359-45b7-9f49-9c0e1bf38805 433919fdf7c7bb3c04678f7d82b26c1d {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001_1 CPT0230660001_1.WholeGenome.RP-1303.bam 72868517834 BAM aligned CPTAC3 b7827db7-eaab-4e5c-b7dd-fb5178cd7102 940deb66f8a342d1aa8db3183801796d {"aliquot_tag": "ALQ_bf82fab7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001 CPT0230660001.WholeGenome.RP-1303.bam 26983389377 BAM aligned CPTAC3 8f24d99e-ba74-4890-b7b2-011ede0f7952 f0fae6f4f178bde896db458f13f03986 {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03497.WGS.Nbc.hg38 C3L-03497 AML WGS buccal_normal CPT0230660001_1 a087aaa3-7b60-4e27-991d-9b9d0464ffa5_wgs_gdc_realn.bam 104030462212 BAM harmonized CPTAC3 cba2d435-0d5a-4de9-a3ce-3bb906983089 4c06ea433b291d8b683bda5d70dd23a6 {"aliquot_tag": "ALQ_bf82fab7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03497.WGS.Nbc.hg38 C3L-03497 AML WGS buccal_normal CPT0230660001 bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wgs_gdc_realn.bam 37146848269 BAM harmonized CPTAC3 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 5ce3f9a6c8cc01a459fbe384adbaf118 {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03497.WGS.Tbm C3L-03497 AML WGS tumor_bone_marrow CPT0230630002 CPT0230630002.WholeGenome.RP-1303.bam 64905594415 BAM aligned CPTAC3 86c43df0-ed93-4f5e-b4fc-aa9b57102524 16c135744104f79a82ea8a38f165a2d4 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.WGS.Tbm.hg38 C3L-03497 AML WGS tumor_bone_marrow CPT0230630002 450e4b1c-4c7f-445e-91bb-880d0024fa02_wgs_gdc_realn.bam 96779530473 BAM harmonized CPTAC3 819a71b8-b34d-42de-9fff-e1c948a5ea18 7dadf9e76592abf1cb0b6392ec0968c0 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.WXS.Nbc C3L-03497 AML WXS buccal_normal CPT0230660001 CPT0230660001.WholeExome.RP-1303.bam 26983389438 BAM aligned CPTAC3 c02f56c2-13ee-4c11-8230-0db3ea6886cc 76ea2182fbc737790c084076f2f7debf {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03497.WXS.Nbc.hg38 C3L-03497 AML WXS buccal_normal CPT0230660001 bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wxs_gdc_realn.bam 37341337754 BAM harmonized CPTAC3 348a2f38-a72f-45bf-8a42-1e6ee6119a96 b07b28db79ce6800a7529b94de852ac1 {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03497.WXS.Tbm C3L-03497 AML WXS tumor_bone_marrow CPT0230630002 CPT0230630002.WholeExome.RP-1303.bam 31660225444 BAM aligned CPTAC3 ac914571-3786-439f-8e5f-44d698220470 fe803097fc6a703f503c2ad92d93c173 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03497.WXS.Tbm.hg38 C3L-03497 AML WXS tumor_bone_marrow CPT0230630002 450e4b1c-4c7f-445e-91bb-880d0024fa02_wxs_gdc_realn.bam 44535114934 BAM harmonized CPTAC3 a4ef610e-d021-431b-9e73-76fe7a7ae06a fc9be7309be29eeeb11cf64b2f3f0156 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.MethArray.Green.Tbm C3L-03506 AML Methylation_Array tumor_bone_marrow CPT0280790002 205555390176_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 aabd3ac0-ae12-4a67-b380-506c8831af8e a62744997105789f2ae0f7305006ceb0 {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.MethArray.Red.Tbm C3L-03506 AML Methylation_Array tumor_bone_marrow CPT0280790002 205555390176_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 fbff295e-e609-4e28-9513-88a00d5ee37c 03082fb7cc339c043b09646e6d901f6f {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.miRNA-Seq.S11_L001_R1.Tbm C3L-03506 AML miRNA-Seq tumor_bone_marrow CPT0280800002 210702_UNC32-K00270_0289_AHKJ22BBXY_GATCAG_S11_L001_R1_001.unaln.bam 253032104 BAM S11_L001_R1 unaligned CPTAC3 c80562ce-107b-4929-b9c5-f11d7e4a8ec3 1cabbf5616f4d1ac4e5ba806e8098771 {"aliquot_tag": "ALQ_e7898fbf", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.miRNA-Seq.Tbm.hg38 C3L-03506 AML miRNA-Seq tumor_bone_marrow CPT0280800002 262734ff-71e2-4eab-8336-4779f1ed752b_mirnaseq_gdc_realn.bam 273375229 BAM harmonized CPTAC3 f5b76cfb-93bd-475d-8d06-c87a5700a677 2c771ffded21ef98d9c34fff7e9780b0 {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.RNA-Seq.chimeric.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.chimeric.gdc_realn.bam 131074510 BAM chimeric harmonized CPTAC3 af3b5702-35db-4063-bd18-cad60bd03e75 73f8dc926c6a3f12c595eae88e619cae {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.RNA-Seq.genomic.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.genomic.gdc_realn.bam 7383637041 BAM genomic harmonized CPTAC3 6300ebb4-db79-408f-964b-f08fc5686f42 04444474c7499cec48be670a229c8361 {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.RNA-Seq.S24_L006_R1.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R1_001.fastq.gz 3763741700 FASTQ S24_L006_R1 unaligned CPTAC3 437768d4-042d-4ce3-976b-4661251774f4 4c29fb079f93601a555179845d9eb4b2 {"aliquot_tag": "ALQ_e7898fbf", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.RNA-Seq.S24_L006_R2.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R2_001.fastq.gz 3971268601 FASTQ S24_L006_R2 unaligned CPTAC3 cfb053a9-a6a0-4a3f-8753-0a09b0a66327 20b192e3ab294b4ce5084ad50846e03b {"aliquot_tag": "ALQ_e7898fbf", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.RNA-Seq.transcriptome.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.transcriptome.gdc_realn.bam 10393790611 BAM transcriptome harmonized CPTAC3 eeb0d106-3cfc-439f-a8df-356dea6a32f0 334ec5cd32ff3f06573609b2aa7fa3ad {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.WGS.Nbc C3L-03506 AML WGS buccal_normal CPT0280780001 CPT0280780001.WholeGenome.RP-2158.bam 62419406007 BAM aligned CPTAC3 cbee0556-0f3e-4294-a1c7-ce272d0fc3ac 09944c7bf4e3e89bafc5fea8b5a94cf5 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03506.WGS.Nbc.hg38 C3L-03506 AML WGS buccal_normal CPT0280780001 b955d449-4e11-4a49-9cf6-285624c143f8_wgs_gdc_realn.bam 196253332359 BAM harmonized CPTAC3 0e01c3e7-f302-4e40-84fa-39093f664511 2cfb1ab27042f5394b7d28c3af4fe668 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03506.WGS.Tbm C3L-03506 AML WGS tumor_bone_marrow CPT0280790002 CPT0280790002.WholeGenome.RP-2158.bam 49404623811 BAM aligned CPTAC3 5e942798-0eb0-463f-b3aa-f83d011c34a3 53d0c9e07c961c86445df230c8a3102e {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.WGS.Tbm.hg38 C3L-03506 AML WGS tumor_bone_marrow CPT0280790002 29bc2957-52fe-492b-a1d3-860e026feacb_wgs_gdc_realn.bam 149163033387 BAM harmonized CPTAC3 e588d3ea-e49d-436d-ba8d-3078d662beeb 0678240761b5592d560ed444a3f466de {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.WXS.Nbc C3L-03506 AML WXS buccal_normal CPT0280780001 CPT0280780001.WholeExome.RP-1303.bam 26364264392 BAM aligned CPTAC3 9bdcfdc5-8d05-4361-81d2-279d000706db 95ceaf077b548990dd4024d02c183966 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03506.WXS.Nbc.hg38 C3L-03506 AML WXS buccal_normal CPT0280780001 b955d449-4e11-4a49-9cf6-285624c143f8_wxs_gdc_realn.bam 36606170104 BAM harmonized CPTAC3 0ccedbbe-7557-439d-b112-1298da45dabf 1d0677f34a1273fbac13df9318c6dca8 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03506.WXS.Tbm C3L-03506 AML WXS tumor_bone_marrow CPT0280790002 CPT0280790002.WholeExome.RP-1303.bam 32393423439 BAM aligned CPTAC3 a3034fb6-fab5-4b0a-b30b-672a77185fd9 f103aec523a654ebcad81a526789c862 {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03506.WXS.Tbm.hg38 C3L-03506 AML WXS tumor_bone_marrow CPT0280790002 29bc2957-52fe-492b-a1d3-860e026feacb_wxs_gdc_realn.bam 44202542671 BAM harmonized CPTAC3 c8ed37bf-da72-4f32-8064-7d5d9d6b578e b120629c8e6d5a0332c75a6fefedf346 {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.MethArray.Green.Tbm C3L-03508 AML Methylation_Array tumor_bone_marrow CPT0280680002 205549600082_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e816b317-19b2-4f1f-b48e-7c896ab609d6 ff86aa33e7ce35a0fb020b76b8e5673a {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.MethArray.Red.Tbm C3L-03508 AML Methylation_Array tumor_bone_marrow CPT0280680002 205549600082_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 54c61ebc-77e7-411c-b78c-b7313ee23581 51290a6c862edbeff2a3e86d833e44f9 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.miRNA-Seq.S2_L001_R1.Tbm C3L-03508 AML miRNA-Seq tumor_bone_marrow CPT0280690002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACTTGA_S2_L001_R1_001.unaln.bam 189912154 BAM S2_L001_R1 unaligned CPTAC3 78062f73-e0dc-4c95-b6c3-3844c978a9ec f726437a37b8489c409187b1868281c5 {"aliquot_tag": "ALQ_d0938cbe", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.miRNA-Seq.Tbm.hg38 C3L-03508 AML miRNA-Seq tumor_bone_marrow CPT0280690002 74d8a080-8de9-41c9-8356-71c7240e6e59_mirnaseq_gdc_realn.bam 207792050 BAM harmonized CPTAC3 dd646ab5-cedb-4969-865f-4d8cbbf56659 ff9d3c15136b963745172aad7dc60bd1 {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.RNA-Seq.chimeric.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.chimeric.gdc_realn.bam 105494203 BAM chimeric harmonized CPTAC3 1164921c-fecf-453a-b6c5-4d0b5e1d90c7 af12bb19d75e347b2fb9bc760cb9f291 {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.RNA-Seq.genomic.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.genomic.gdc_realn.bam 8279378392 BAM genomic harmonized CPTAC3 4b5d0dd8-e739-4608-8f36-59c955c71a4d e9c2987404b28747d93a95bdc9c388fc {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.RNA-Seq.S27_L007_R1.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R1_001.fastq.gz 4258717693 FASTQ S27_L007_R1 unaligned CPTAC3 eff2fed0-50f2-463a-af08-4f7e2c407cd1 c245555a40c878fb70c5eb301afda274 {"aliquot_tag": "ALQ_d0938cbe", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.RNA-Seq.S27_L007_R2.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R2_001.fastq.gz 4482410886 FASTQ S27_L007_R2 unaligned CPTAC3 9f0b5557-93f6-493d-a913-876087e28fcc 33c4111942f142a8f80e4c6ede7b55fc {"aliquot_tag": "ALQ_d0938cbe", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.RNA-Seq.transcriptome.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.transcriptome.gdc_realn.bam 9136732788 BAM transcriptome harmonized CPTAC3 465697cb-0a77-49d1-8cc7-a0395accfc11 84c7ae1f7a6207721cfdce1b43cc7cb7 {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.WGS.Nbc C3L-03508 AML WGS buccal_normal CPT0280670001 CPT0280670001.WholeGenome.RP-2158.bam 50606862923 BAM aligned CPTAC3 aaf74e6b-8b70-4e13-8c58-ace5af973742 094a810e82077dacfc980869dd783892 {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03508.WGS.Nbc.hg38 C3L-03508 AML WGS buccal_normal CPT0280670001 bd67068d-c347-4456-9873-6215dcad3079_wgs_gdc_realn.bam 155897816745 BAM harmonized CPTAC3 931985c6-ced7-4c82-b2ef-ed40d574818f d15eb455d32134e3ee06903267226e5e {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03508.WGS.Tbm C3L-03508 AML WGS tumor_bone_marrow CPT0280680002 CPT0280680002.WholeGenome.RP-2158.bam 45997679356 BAM aligned CPTAC3 50e91da8-aaf6-4a1b-88d0-071e193c8f06 c9f19fc30ce7e0a7f8e20b5ddd996f91 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.WGS.Tbm.hg38 C3L-03508 AML WGS tumor_bone_marrow CPT0280680002 9b7446ea-aee1-41d6-b664-9e789f04c463_wgs_gdc_realn.bam 137496545054 BAM harmonized CPTAC3 eb2d66d8-1b52-4fa6-9732-902cab19da2b 0f1ed61f5a4bc37f0dfa452baa62e5e5 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.WXS.Nbc C3L-03508 AML WXS buccal_normal CPT0280670001 CPT0280670001.WholeExome.RP-1303.bam 27514868803 BAM aligned CPTAC3 7cacf811-a0a2-45a3-a381-e7b164027783 dd9d516ce528e8a321534d53cf94e570 {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03508.WXS.Nbc.hg38 C3L-03508 AML WXS buccal_normal CPT0280670001 bd67068d-c347-4456-9873-6215dcad3079_wxs_gdc_realn.bam 38543708143 BAM harmonized CPTAC3 4749abe5-0c59-4005-9b4b-56aab04fd2d2 715bbfbb5137a391b8f94f39b641c2d8 {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03508.WXS.Tbm C3L-03508 AML WXS tumor_bone_marrow CPT0280680002 CPT0280680002.WholeExome.RP-1303.bam 19972493104 BAM aligned CPTAC3 b749c244-502c-441c-9624-8ab19e96f16a 429d35ada230f561489b72af27fff56d {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03508.WXS.Tbm.hg38 C3L-03508 AML WXS tumor_bone_marrow CPT0280680002 9b7446ea-aee1-41d6-b664-9e789f04c463_wxs_gdc_realn.bam 27759959188 BAM harmonized CPTAC3 34c0ba20-4cf2-4551-b896-7820e41613f5 6f0bafc535f18b3c3a9dbc1753286dc5 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.MethArray.Green.Tbm C3L-03510 AML Methylation_Array tumor_bone_marrow CPT0410580002 205555380130_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 1e503c98-7021-46c1-91b1-d3ce8c60912d c558226aa6d99883b35ba22b42dd9ce2 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.MethArray.Red.Tbm C3L-03510 AML Methylation_Array tumor_bone_marrow CPT0410580002 205555380130_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 c6d84575-880a-474a-a886-a6d7cb463375 d8c351a1ab7a6cf8c4bb6a94545b4460 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.miRNA-Seq.S27_L005_R1.Tbm C3L-03510 AML miRNA-Seq tumor_bone_marrow CPT0410590002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACCGG_S27_L005_R1_001.unaln.bam 250763383 BAM S27_L005_R1 unaligned CPTAC3 bb30cd37-6579-4ae0-97a6-1c23e7f69898 b601f91af6452cee96f1c94f29eb980c {"aliquot_tag": "ALQ_3a529cb1", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.miRNA-Seq.Tbm.hg38 C3L-03510 AML miRNA-Seq tumor_bone_marrow CPT0410590002 bc256847-ffa5-41bc-8b2c-2ef54e8d2b29_mirnaseq_gdc_realn.bam 261306778 BAM harmonized CPTAC3 ce7c1316-c8f1-451c-847c-394df68dc1bb 43b3836445c5740eed45ba7cf36fd212 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.RNA-Seq.chimeric.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.chimeric.gdc_realn.bam 257437696 BAM chimeric harmonized CPTAC3 c332a6b3-d314-483b-b049-ac4c22fc8a2f 49a85d4ca2352f1a65bb3d96cf587ed7 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.RNA-Seq.genomic.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.genomic.gdc_realn.bam 9524510209 BAM genomic harmonized CPTAC3 46d62a30-5800-48f2-accf-1374573a2bb0 e58177a316bdc623e0f580d17d7ab7b8 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.RNA-Seq.S3_L001_R1.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R1_001.fastq.gz 4251229637 FASTQ S3_L001_R1 unaligned CPTAC3 0d1b1ada-a377-4967-bf87-6f932737d579 f99de475a7956502806f30460fead33f {"aliquot_tag": "ALQ_3a529cb1", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.RNA-Seq.S3_L001_R2.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R2_001.fastq.gz 4582311192 FASTQ S3_L001_R2 unaligned CPTAC3 7b51fead-61ec-46e0-a257-af0103cbda61 6675a1ad2f56ed23541626116b7013f9 {"aliquot_tag": "ALQ_3a529cb1", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.RNA-Seq.transcriptome.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.transcriptome.gdc_realn.bam 8910562315 BAM transcriptome harmonized CPTAC3 988efecf-8b9a-4f8b-9527-cbdac13c2df0 c2a19800bbaae48fdc505cc4c81ff0d7 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.WGS.Nbc C3L-03510 AML WGS buccal_normal CPT0410550001 CPT0410550001.WholeGenome.RP-2158.bam 52385796822 BAM aligned CPTAC3 95dc0f78-6155-409b-889f-763edd779ef7 4219709d8a88f8275c5bc8d7196dc962 {"aliquot_tag": "ALQ_66ab200a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03510.WGS.Nbc.hg38 C3L-03510 AML WGS buccal_normal CPT0410550001 ccf25dcd-3d07-4364-ba84-4d3ef2594ff5_wgs_gdc_realn.bam 150767993249 BAM harmonized CPTAC3 f800b205-92ba-4e0d-90bf-71788445fa57 2efc7b6cf1079ded120cd07aa502c336 {"aliquot_tag": "ALQ_66ab200a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-03510.WGS.Tbm C3L-03510 AML WGS tumor_bone_marrow CPT0410580002 CPT0410580002.WholeGenome.RP-2158.bam 63115965571 BAM aligned CPTAC3 50eb861f-b7e1-43d0-92ed-c20151f0538f d4689be58306f8a0ee0ed21c598d8178 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.WGS.Tbm.hg38 C3L-03510 AML WGS tumor_bone_marrow CPT0410580002 9e15dc83-7043-40b1-bd2e-718f0c9ba19c_wgs_gdc_realn.bam 174421184757 BAM harmonized CPTAC3 3d7fe562-8c05-48ae-988c-7be3aa2fdbe4 916283feb59ee0dcedbaf4f82943af2e {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.WXS.Tbm C3L-03510 AML WXS tumor_bone_marrow CPT0410580002 CPT0410580002.WholeExome.RP-1303.bam 23475577138 BAM aligned CPTAC3 33447cf0-2b3f-4a5b-aecc-f9bdff02835a 6691314114c0dc074c2b8efb904e7dc4 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03510.WXS.Tbm.hg38 C3L-03510 AML WXS tumor_bone_marrow CPT0410580002 9e15dc83-7043-40b1-bd2e-718f0c9ba19c_wxs_gdc_realn.bam 32666170478 BAM harmonized CPTAC3 99bfee65-bdf3-4382-ab7b-f1168e6cd2a0 928a1920b019d6d740d2d7b1c6d67aa3 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-03513.RNA-Seq.chimeric.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.chimeric.gdc_realn.bam 204620638 BAM chimeric harmonized CPTAC3 337aa8cf-431a-4d63-b34e-60f2837778ee 1bc4a829573cd6e6a3566060b73c9194 {"aliquot_tag": "ALQ_29dd7f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03513.RNA-Seq.genomic.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.genomic.gdc_realn.bam 8451061261 BAM genomic harmonized CPTAC3 f9812395-0b8c-488d-9fa2-60581c850d4a 3ae30279f03a8b9ce431bc315d10fb74 {"aliquot_tag": "ALQ_29dd7f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03513.RNA-Seq.S6_L002_R1.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 4012444445 FASTQ S6_L002_R1 unaligned CPTAC3 30c65fa6-6f8c-41cc-ae25-6089adc93750 472f5d53e2220e0541d3fd3aef11257f {"aliquot_tag": "ALQ_29dd7f9a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03513.RNA-Seq.S6_L002_R2.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4410946219 FASTQ S6_L002_R2 unaligned CPTAC3 4f9e894b-8949-486f-ae58-ee15c1d111bf 054f5b8f4ebef2424a220403067010d8 {"aliquot_tag": "ALQ_29dd7f9a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03513.RNA-Seq.transcriptome.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.transcriptome.gdc_realn.bam 11357227996 BAM transcriptome harmonized CPTAC3 c5b8a7dd-7744-4753-bfd3-4aedaa3010eb 6c4057c92e39f607d0571b5911249c21 {"aliquot_tag": "ALQ_29dd7f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03589.MethArray.Green.T C3L-03589 UCEC Methylation_Array tumor CPT0188710006 203561450018_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 81868de6-a7e2-4065-912e-e60476cdaf03 be844a74fbcc9bb2f8d5016b0d3d15ca {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor"} -C3L-03589.MethArray.Red.T C3L-03589 UCEC Methylation_Array tumor CPT0188710006 203561450018_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 05539ace-57f4-48e9-9992-5e70cb27c15d f10b7834a4e90564c19c2956172fb08d {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor"} -C3L-03589.miRNA-Seq.S29_L004_R1.T C3L-03589 UCEC miRNA-Seq tumor CPT0188710009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAACTA_S29_L004_R1_001.unaln.bam 238475972 BAM S29_L004_R1 unaligned CPTAC3 547dd03e-764e-403b-850d-5ffde2ae0db2 da3b729d2256992e41d431b769712487 {"aliquot_tag": "ALQ_b60fbff0", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03589.miRNA-Seq.T.hg38 C3L-03589 UCEC miRNA-Seq tumor CPT0188710009 d953d58a-30ab-42d3-8402-e5d052d3db24_mirnaseq_gdc_realn.bam 271472573 BAM harmonized CPTAC3 756e7c3d-894e-43a5-800b-f335213db62d 0b80ef447889bd80d5ec9f8dcb3fff1f {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.chimeric.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.chimeric.gdc_realn.bam 32231247 BAM chimeric harmonized CPTAC3 d0e304d0-e78c-40b1-b629-e1c3a4a236b5 1a5559789c98f9a0860ffb678905c9a3 {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.chimeric.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.chimeric.gdc_realn.bam 182239680 BAM chimeric harmonized CPTAC3 94675456-c625-4722-9cda-5d99cfab529d 1c4de518fb13be8418d865c12ada818b {"aliquot_tag": "ALQ_8ff9f7d5", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.genomic.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.genomic.gdc_realn.bam 7291860631 BAM genomic harmonized CPTAC3 a9cc2207-d181-437b-924d-308904a94e86 53744d9f3ec2375d5cda9507f6e3b487 {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.genomic.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.genomic.gdc_realn.bam 10103885246 BAM genomic harmonized CPTAC3 a1bef494-3032-40e3-a6f9-4afc8995fdb1 73975a0a122fa1732cef1ea08f2176a0 {"aliquot_tag": "ALQ_8ff9f7d5", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.S20_R1.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R1_001.fastq.gz 6148540452 FASTQ S20_R1 unaligned CPTAC3 f0b6263d-b4a5-4ed0-b9b1-c04d25351671 37802e91cb4faa59706573cc739023ff {"aliquot_tag": "ALQ_8ff9f7d5", "sample": "S20", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.S20_R2.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R2_001.fastq.gz 6363547418 FASTQ S20_R2 unaligned CPTAC3 6b7bf9fa-71f8-4616-a99a-7d59170e22e1 72d74baf26d4ea789cc633bc13733393 {"aliquot_tag": "ALQ_8ff9f7d5", "sample": "S20", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.S9_L003_R1.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R1_001.fastq.gz 3472628912 FASTQ S9_L003_R1 unaligned CPTAC3 e77f5f6a-e76c-48b6-90d8-51ce0c4b32ad d4ed53e3390b9e8cca2f2efcd3c7d712 {"aliquot_tag": "ALQ_b60fbff0", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.S9_L003_R2.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R2_001.fastq.gz 3956765576 FASTQ S9_L003_R2 unaligned CPTAC3 a1215d7e-9536-4a14-8474-6a67c0014834 df652364fe37d24dde1bfa9e53848cba {"aliquot_tag": "ALQ_b60fbff0", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.transcriptome.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.transcriptome.gdc_realn.bam 11555709157 BAM transcriptome harmonized CPTAC3 24c24c8c-c0a5-48d1-a9f2-2eff45350135 fc4740b159112a2395f0d8e029b61ebe {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor"} -C3L-03589.RNA-Seq.transcriptome.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.transcriptome.gdc_realn.bam 6546683301 BAM transcriptome harmonized CPTAC3 e25ba766-e609-4f91-ae61-48bdde8abbc5 3fd7ec77b4534a38dce2b9867276428f {"aliquot_tag": "ALQ_8ff9f7d5", "gdc_sample_type": "Primary Tumor"} -C3L-03589.WGS.N C3L-03589 UCEC WGS blood_normal CPT0188770002 CPT0188770002.WholeGenome.RP-1303.bam 78304610301 BAM aligned CPTAC3 a102817c-ea10-4e11-9b8a-7c22229e172d 35ddb8c4094ae5783b751c8e55f57c41 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-03589.WGS.N.hg38 C3L-03589 UCEC WGS blood_normal CPT0188770002 68f8e0fd-5220-4628-9987-e4fbea57e9e9_wgs_gdc_realn.bam 115115636168 BAM harmonized CPTAC3 bd6b2826-154e-4b74-a395-7fadc4650c7c 039460289d7ce02661fc3e39d56e6537 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-03589.WGS.T C3L-03589 UCEC WGS tumor CPT0188710006 CPT0188710006.WholeGenome.RP-1303.bam 68898683915 BAM aligned CPTAC3 e78e8c4e-6e66-49b2-ade3-ca3f13088a7c 18330a530cba891d9ea23073a7b48dab {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor"} -C3L-03589.WGS.T.hg38 C3L-03589 UCEC WGS tumor CPT0188710006 7683eac6-c2fe-47d2-969f-5d90ef340b6a_wgs_gdc_realn.bam 101121836398 BAM harmonized CPTAC3 558d49c6-bca4-415d-b337-421423306c9c 9d24e13851c4d8ad9d6a406e5d8816e6 {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor"} -C3L-03589.WXS.N C3L-03589 UCEC WXS blood_normal CPT0188770002 CPT0188770002.WholeExome.RP-1303.bam 23428337101 BAM aligned CPTAC3 bd706b2b-cd79-432c-9205-55249935a96a 235450b5080e76110ebd1eb83c146153 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-03589.WXS.N.hg38 C3L-03589 UCEC WXS blood_normal CPT0188770002 68f8e0fd-5220-4628-9987-e4fbea57e9e9_wxs_gdc_realn.bam 32013242171 BAM harmonized CPTAC3 39e343ca-ccae-406e-b79e-46c1b13d585c c21650abd03dd37690be33dda1050ac8 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-03589.WXS.T C3L-03589 UCEC WXS tumor CPT0188710006 CPT0188710006.WholeExome.RP-1303.bam 27977586785 BAM aligned CPTAC3 abdfdd89-5f4e-4ef0-8874-c6f2235de180 98cc2eb4542757d259770bfdf0d1e125 {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor"} -C3L-03589.WXS.T.hg38 C3L-03589 UCEC WXS tumor CPT0188710006 7683eac6-c2fe-47d2-969f-5d90ef340b6a_wxs_gdc_realn.bam 39643076597 BAM harmonized CPTAC3 c38f1f62-a3fb-4a49-a51b-8ff31ececee1 dab1be6c12660ccb4b3e9c8c18304bbb {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor"} -C3L-03622.ANN_d2441ba6.RNA-Seq.chimeric.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.chimeric.gdc_realn.bam 283926344 BAM chimeric harmonized CPTAC3 c34261e7-ceff-4840-9b30-2fc964b959b9 9454faeaa45dd080ae4b3b4cd9aaf605 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03622.ANN_d2441ba6.RNA-Seq.genomic.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.genomic.gdc_realn.bam 9167614712 BAM genomic harmonized CPTAC3 9ee4bb9f-2131-4c62-b487-179328390da5 cc0c784cf7c300bab3ad8d9de532741e {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03622.ANN_d2441ba6.RNA-Seq.S13_L008_R1.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R1_001.fastq.gz 3685200138 FASTQ S13_L008_R1 unaligned CPTAC3 7edc8bc7-80fc-466d-bae6-ea92952dc276 12bf08494f7a147f1af2757ee04e6365 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03622.ANN_d2441ba6.RNA-Seq.S13_L008_R2.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R2_001.fastq.gz 4305534457 FASTQ S13_L008_R2 unaligned CPTAC3 71eca917-c9e4-4e30-b6c6-87ab271d4005 0fac15fd527557478eedf1ee97aec220 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03622.ANN_d2441ba6.RNA-Seq.transcriptome.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.transcriptome.gdc_realn.bam 10845433506 BAM transcriptome harmonized CPTAC3 efbf3955-8ce8-43e7-adf3-98c8b532a2c0 0b98a6c5445a23fde3ead842372bca15 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03622.DUP_223c8fd2.WXS.T C3L-03622 PDA WXS tumor CPT0198520030 CPT0198520030.WholeExome.RP-1303.bam 22234685604 BAM aligned CPTAC3 87220180-a56d-47d1-9c0f-f7d15f66e16b 429913105b9d95db2bad7cd0c73c7b09 {"aliquot_tag": "DUP_223c8fd2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03622.DUP_223c8fd2.WXS.T.hg38 C3L-03622 PDA WXS tumor CPT0198520030 29544829-4515-4a88-bb93-480bae55d8f6_wxs_gdc_realn.bam 31513261886 BAM harmonized CPTAC3 acc533f2-f879-437d-ad63-4da6676c5558 a3a792d58baba0ead763535e18b68725 {"aliquot_tag": "DUP_223c8fd2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03622.DUP_42fb0637.WXS.T C3L-03622 PDA WXS tumor CPT0198520029 CPT0198520029.WholeExome.RP-1303.bam 23496699177 BAM aligned CPTAC3 46b67bf0-1622-4e46-8e01-172a76610f1e 4d791ba16e4214dea5ed5f351284cd39 {"aliquot_tag": "DUP_42fb0637", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03622.DUP_42fb0637.WXS.T.hg38 C3L-03622 PDA WXS tumor CPT0198520029 5b43c222-57ad-42df-9c48-53a63de6b581_wxs_gdc_realn.bam 33347518669 BAM harmonized CPTAC3 5e95894a-5022-4570-92a5-2f8aac3ad1ef 6b02990e44077596b6aadf09697f34c0 {"aliquot_tag": "DUP_42fb0637", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03622.DUP_685f489d.WXS.N C3L-03622 PDA WXS blood_normal CPT0198540002 CPT0198540002.WholeExome.RP-1303.bam 22359814391 BAM aligned CPTAC3 af127d2a-5e90-45e7-a318-6f36ab349a7a 0a40fb40143393ed93b008ddf6380487 {"aliquot_tag": "DUP_685f489d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-03622.DUP_685f489d.WXS.N.hg38 C3L-03622 PDA WXS blood_normal CPT0198540002 cd3f7361-0ff3-4ff3-8ee5-d457ccc01a3d_wxs_gdc_realn.bam 31304395230 BAM harmonized CPTAC3 606ae6c5-5352-4dd1-bbc2-f1c7f877a247 c2daa8c5bd972b5dd9f9d91b488e8d59 {"aliquot_tag": "DUP_685f489d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-03624.DUP_5e7acee7.MethArray.Green.T C3L-03624 PDA Methylation_Array tumor CPT0198600023 203561450106_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 99917422-bc29-474e-ac63-c55f951c5f29 5d43b6e4dedee263cb4287afa4e7163e {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_5e7acee7.MethArray.Red.T C3L-03624 PDA Methylation_Array tumor CPT0198600023 203561450106_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 02c528e9-bcee-40cc-870c-4ce4860499f5 e384cf67f868ef89534a060eca8b45fb {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_5e7acee7.Targeted.T C3L-03624 PDA Targeted_Sequencing tumor CPT0198600023 CPT0198600023.CustomSelection.RP-1303.PDO-18786.bam 4687124645 BAM aligned CPTAC3 331dafe8-ebde-414e-aea9-606df4d52972 25d346e5784a4a1aa7d3ffe5f33cf552 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_5e7acee7.Targeted.T.hg38 C3L-03624 PDA Targeted_Sequencing tumor CPT0198600023 85ace2b1-5081-4afa-ac26-f14706330702_targetedsequencing_gdc_realn.bam 6634225429 BAM harmonized CPTAC3 4fb9a646-437c-4661-bc5b-6222f2f989b9 aa1cb91f4fb5ea1ccf76c4535e428aa1 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_5e7acee7.WGS.T C3L-03624 PDA WGS tumor CPT0198600023 CPT0198600023.WholeGenome.RP-1303.bam 67120752450 BAM aligned CPTAC3 fef74278-e5cb-4a58-8cef-f32095a53697 6be236b760b61393e9fa996523eb1407 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_5e7acee7.WGS.T.hg38 C3L-03624 PDA WGS tumor CPT0198600023 85ace2b1-5081-4afa-ac26-f14706330702_wgs_gdc_realn.bam 99277653748 BAM harmonized CPTAC3 08ad649a-c5a7-40bd-b557-8ce768c71258 cef4326e80ee70f78d83b95514ded7c8 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_5e7acee7.WXS.T C3L-03624 PDA WXS tumor CPT0198600023 CPT0198600023.WholeExome.RP-1303.bam 41660712690 BAM aligned CPTAC3 f9c7e8bb-2cdd-4adc-9d21-de3b24c850aa 79a0844548612a770e688e8612aa2e17 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_5e7acee7.WXS.T.hg38 C3L-03624 PDA WXS tumor CPT0198600023 85ace2b1-5081-4afa-ac26-f14706330702_wxs_gdc_realn.bam 58465454619 BAM harmonized CPTAC3 45881215-b482-43ca-b3b8-260ecd7c413e 00d7ebbc7647e175d0e3cc371973da64 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.MethArray.Green.T C3L-03624 PDA Methylation_Array tumor CPT0198600029 203561450054_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d3d57b07-2190-4139-8b13-5d0b898fc315 5ca344f85edf0bb111aa8bb930127282 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.MethArray.Red.T C3L-03624 PDA Methylation_Array tumor CPT0198600029 203561450054_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 1005c423-1b8a-4f80-8aff-73d534839915 1303ff3080de643fe0991f280151552a {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.Targeted.T C3L-03624 PDA Targeted_Sequencing tumor CPT0198600029 CPT0198600029.CustomSelection.RP-1303.PDO-18786.bam 4326516796 BAM aligned CPTAC3 39370a66-c702-4d2b-98a7-2a0037ab0f7c 931996938d6421c1494dc0451d57faa2 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.Targeted.T.hg38 C3L-03624 PDA Targeted_Sequencing tumor CPT0198600029 a4653823-73c2-46db-b7f2-6dca71812990_targetedsequencing_gdc_realn.bam 6223731837 BAM harmonized CPTAC3 997438ef-9f6a-4d62-9889-d7ffb920ce32 7e585d07b945658c90cd092639ca9d20 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.WGS.T C3L-03624 PDA WGS tumor CPT0198600029 CPT0198600029.WholeGenome.RP-1303.bam 66620372675 BAM aligned CPTAC3 89d44f2b-e26f-4147-ab32-443181a9188c 253c8492ee5d8fde2ea8ed1c44cc0197 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.WGS.T.hg38 C3L-03624 PDA WGS tumor CPT0198600029 a4653823-73c2-46db-b7f2-6dca71812990_wgs_gdc_realn.bam 96494702130 BAM harmonized CPTAC3 f8ec4827-e5a0-4521-821d-6a0833c31ae2 d9af7f3ac98f1c19f2f059508c8e7dc1 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.WXS.T C3L-03624 PDA WXS tumor CPT0198600029 CPT0198600029.WholeExome.RP-1303.bam 42976995465 BAM aligned CPTAC3 40f9adc9-29c0-485c-b99e-866f7e1cf4c6 18bb27b3df391e6e6556ad5de50f2dec {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.DUP_beaf27f9.WXS.T.hg38 C3L-03624 PDA WXS tumor CPT0198600029 a4653823-73c2-46db-b7f2-6dca71812990_wxs_gdc_realn.bam 60382152695 BAM harmonized CPTAC3 791d21fe-cffe-47fe-afef-ab032648cd52 2eaf095ef634b2ad9aa42b20e9271261 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03624.WGS.N C3L-03624 PDA WGS blood_normal CPT0198630002 CPT0198630002.WholeGenome.RP-1303.bam 65953852449 BAM aligned CPTAC3 7d95d29f-beb3-4647-98a7-b20861630aa9 d603c45cacb38948894e40036ca69417 {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal"} -C3L-03624.WGS.N.hg38 C3L-03624 PDA WGS blood_normal CPT0198630002 c96c0aee-5f31-409e-9188-8fcf3653cdc0_wgs_gdc_realn.bam 93560637257 BAM harmonized CPTAC3 6a5aad2a-8a56-4295-a636-a70eca9cefae a0949d97589fc9c5ad8fc31a23478510 {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal"} -C3L-03624.WXS.N C3L-03624 PDA WXS blood_normal CPT0198630002 CPT0198630002.WholeExome.RP-1303.bam 25023948333 BAM aligned CPTAC3 37dbda67-6616-42e2-a417-9ab8175856c7 abc799b4563ce92a4c0222986342df81 {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal"} -C3L-03624.WXS.N.hg38 C3L-03624 PDA WXS blood_normal CPT0198630002 c96c0aee-5f31-409e-9188-8fcf3653cdc0_wxs_gdc_realn.bam 33898148249 BAM harmonized CPTAC3 dbbaffe7-de40-4707-ac67-682934f2c5ca 8607275b484c3152010691c6d88dd5bd {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal"} -C3L-03624.WXS.T C3L-03624 PDA WXS tumor CPT0198600025 CPT0198600025.WholeExome.RP-1303.bam 47310615021 BAM aligned CPTAC3 8f713792-8585-41da-be6c-91627cea748b f13dbd12d947dfdd776bb9594751dc4c {"aliquot_tag": "ALQ_b7196bd2", "gdc_sample_type": "Primary Tumor"} -C3L-03628.MethArray.Green.T C3L-03628 PDA Methylation_Array tumor CPT0198700008 203561450100_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1050e3e8-af97-4065-9865-1c7d9194918e 1ea94a02fc977c54a44cc7e783177ab8 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03628.MethArray.Red.T C3L-03628 PDA Methylation_Array tumor CPT0198700008 203561450100_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 30c5bb4e-e134-4c59-b92d-bb48f7d89e5e 4846ec8d806685e5a7688ea5534761d6 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03628.miRNA-Seq.S26_L005_R1.T C3L-03628 PDA miRNA-Seq tumor CPT0198700011 190712_UNC32-K00270_0192_BH7HL3BBXY_TTAGGC_S26_L005_R1_001.unaln.bam 216539200 BAM S26_L005_R1 unaligned CPTAC3 52dde65c-4875-4d54-b53f-eed554f095ae 4aa7533ea1de95d81d1867d046d29b97 {"aliquot_tag": "ALQ_50052fad", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03628.miRNA-Seq.T.hg38 C3L-03628 PDA miRNA-Seq tumor CPT0198700011 dc360683-4dda-4c0a-b235-0f9eea5d1112_mirnaseq_gdc_realn.bam 245874286 BAM harmonized CPTAC3 d43af213-0cf9-437d-95f1-db449cb1248f 90bb0fd0a3b5f0359ceebe7a66067b2f {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor"} -C3L-03628.RNA-Seq.chimeric.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.chimeric.gdc_realn.bam 34222759 BAM chimeric harmonized CPTAC3 bdb1246d-ef24-4859-bfa6-acb9155036fb 6f6e257840b3d02e7674c2cf0c11209f {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor"} -C3L-03628.RNA-Seq.genomic.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.genomic.gdc_realn.bam 8039999601 BAM genomic harmonized CPTAC3 29f9f1e1-1b3c-4316-9761-7bfa96a4a2a9 61c38f5527c849d4424b181c7220d72f {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor"} -C3L-03628.RNA-Seq.S16_L004_R1.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R1_001.fastq.gz 3560940102 FASTQ S16_L004_R1 unaligned CPTAC3 59922327-2842-491b-ae57-c7bacc87c47c 757fe171bddf36d005faf2cf04017050 {"aliquot_tag": "ALQ_50052fad", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03628.RNA-Seq.S16_L004_R2.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R2_001.fastq.gz 4051349752 FASTQ S16_L004_R2 unaligned CPTAC3 49d41fd0-4d39-428e-be37-3c7193bbee85 45168a75f5f9399f9a2d557909e3e524 {"aliquot_tag": "ALQ_50052fad", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03628.RNA-Seq.transcriptome.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.transcriptome.gdc_realn.bam 9799925371 BAM transcriptome harmonized CPTAC3 ecb509bc-1c47-4760-ba37-e2cb3435cfd1 07328f2adc8d0441fb90b1dc233df530 {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor"} -C3L-03628.Targeted.T C3L-03628 PDA Targeted_Sequencing tumor CPT0198700008 CPT0198700008.CustomSelection.RP-1303.PDO-18786.bam 4631118603 BAM aligned CPTAC3 e0d3090c-6e82-4f5e-a38b-a3c3e2f82397 694c0c4d7d24efdd317ab50ed60fe421 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03628.Targeted.T.hg38 C3L-03628 PDA Targeted_Sequencing tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_targetedsequencing_gdc_realn.bam 6434773505 BAM harmonized CPTAC3 b4691887-13d5-4843-a29f-44976d9e3c38 8a3d01b372b4dfe142d13f515a9a1eaf {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03628.WGS.N C3L-03628 PDA WGS blood_normal CPT0198740002 CPT0198740002.WholeGenome.RP-1303.bam 61673342664 BAM aligned CPTAC3 6d053580-4392-4097-bfdf-78ca3fffa957 53a5cd8d952602dea692192331812b01 {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal"} -C3L-03628.WGS.N.hg38 C3L-03628 PDA WGS blood_normal CPT0198740002 eb7b05e5-5bdf-4428-86dc-c3db5026f54d_wgs_gdc_realn.bam 88929799208 BAM harmonized CPTAC3 b6ebc683-52f5-4d6b-851b-6b11d8e9130c d07295c3873de35cd3fa1cde2e2eb955 {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal"} -C3L-03628.WGS.T C3L-03628 PDA WGS tumor CPT0198700008 CPT0198700008.WholeGenome.RP-1303.bam 69719962950 BAM aligned CPTAC3 3f1aa075-8709-43c0-a4ce-ca69ac2ac54e 12350670bfedb56dd31c988f7e4a3dbe {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03628.WGS.T.hg38 C3L-03628 PDA WGS tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_wgs_gdc_realn.bam 101553151265 BAM harmonized CPTAC3 26381947-e749-47bb-a186-99fa4323ebf9 0d631fd39e05f24b93cd35c89774b65c {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03628.WXS.N C3L-03628 PDA WXS blood_normal CPT0198740002 CPT0198740002.WholeExome.RP-1303.bam 28568408196 BAM aligned CPTAC3 8424fece-edbe-4d06-8493-b561efd6479e 981fadd3d88f3e8456180785c116a8df {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal"} -C3L-03628.WXS.N.hg38 C3L-03628 PDA WXS blood_normal CPT0198740002 eb7b05e5-5bdf-4428-86dc-c3db5026f54d_wxs_gdc_realn.bam 39365199085 BAM harmonized CPTAC3 dd82c39e-22e0-46eb-a844-2fe349b189ca 28322c6619a38f31234cf3ad63f599ef {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal"} -C3L-03628.WXS.T C3L-03628 PDA WXS tumor CPT0198700008 CPT0198700008.WholeExome.RP-1303.bam 52288761525 BAM aligned CPTAC3 6e2d92da-2d9c-4634-b2da-e04534bd2fcc 2ae31f884c27ecd80f58132fda566f32 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03628.WXS.T.hg38 C3L-03628 PDA WXS tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_wxs_gdc_realn.bam 72532663191 BAM harmonized CPTAC3 d40063dc-8e93-4938-8ebc-29e56169bb36 1e7d22e2b97179eff14dd4aeb25facb8 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor"} -C3L-03629.ANN_d902e6dc.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.chimeric.gdc_realn.bam 226394775 BAM chimeric harmonized CPTAC3 ea472771-ef4a-44aa-9a1f-eba227d1da9d 1bb5cc004e8b5739ccdd8f85b4d774e6 {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.ANN_d902e6dc.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.genomic.gdc_realn.bam 10359816613 BAM genomic harmonized CPTAC3 bf115cea-55a3-4054-a7e5-77a301919c38 7b165d45b52da1db9d82e8a3effa5f79 {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.ANN_d902e6dc.RNA-Seq.S6_L006_R1.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R1_001.fastq.gz 3422136785 FASTQ S6_L006_R1 unaligned CPTAC3 7fecdbc1-0f98-4335-bf75-3036a9d9ab9e 22354d5ee834f218f1f2d5a1560218c7 {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03629.ANN_d902e6dc.RNA-Seq.S6_L006_R2.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R2_001.fastq.gz 3771090019 FASTQ S6_L006_R2 unaligned CPTAC3 74d67b6a-cbb9-458f-b5b6-c498e4e559fc 86a2a6f11f211ae31e3fc7921761788a {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03629.ANN_d902e6dc.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.transcriptome.gdc_realn.bam 8617873999 BAM transcriptome harmonized CPTAC3 8311c360-c9f6-40a1-8c75-46a038aef3cf 39fb484d7254e960f20ad0860a4ba1ae {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_400bb766.WXS.T C3L-03629 PDA WXS tumor CPT0198810033 CPT0198810033.WholeExome.RP-1303.bam 20742950512 BAM aligned CPTAC3 22fe454d-fd90-4bf3-9ba5-084c3ce0b50b 18d2457995514a0df3034ab2b68b7a63 {"aliquot_tag": "DUP_400bb766", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_400bb766.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810033 4c5320d3-3d57-4115-8865-3cb140cb3815_wxs_gdc_realn.bam 28904578878 BAM harmonized CPTAC3 d0bfb95d-1cd4-454f-846a-343eeece9886 aa8454f338902ecbc3c33f3e7adfbe2b {"aliquot_tag": "DUP_400bb766", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_9643701b.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.chimeric.gdc_realn.bam 267510241 BAM chimeric harmonized CPTAC3 0b28579a-259f-445a-8c32-73cbdc194df8 a371010a56aa536868271736f4f48974 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_9643701b.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.genomic.gdc_realn.bam 6397383970 BAM genomic harmonized CPTAC3 1e5c9ae3-c57b-4dfd-b51d-9ed74d5dc5a4 29d76b677a203d60b24a3f6fd1aeee12 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_9643701b.RNA-Seq.S7_L002_R1.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 2898312783 FASTQ S7_L002_R1 unaligned CPTAC3 7a35a568-320b-451a-b23f-8c0d181afcf8 0bebbffcc25a0239f140efe58b5cdd39 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_9643701b.RNA-Seq.S7_L002_R2.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3193547096 FASTQ S7_L002_R2 unaligned CPTAC3 d5b5a4fd-2c7a-4551-9591-dab55b93cd47 22aca1b1cd2aa61f9f82934f1f2ec1c4 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_9643701b.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.transcriptome.gdc_realn.bam 7894499938 BAM transcriptome harmonized CPTAC3 cd925ca9-c6af-4003-aa38-71820abb9a17 06fe9ecd2f446a7af5dc4b4fe34954b4 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_a9681253.WXS.T C3L-03629 PDA WXS tumor CPT0198810035 CPT0198810035.WholeExome.RP-1303.bam 40397390794 BAM aligned CPTAC3 673e93c0-f62c-435d-93f0-1e3647e70ffb c4e9056f291837fecfd11b4667ce991b {"aliquot_tag": "DUP_a9681253", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_a9681253.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810035 a10567d2-756b-4fdb-98d5-0c8cdc98e4cf_wxs_gdc_realn.bam 55328130665 BAM harmonized CPTAC3 6d1154ab-5a61-459a-adad-9a17b1be0c59 72f91289be265be886841f095520864f {"aliquot_tag": "DUP_a9681253", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_d4c15b43.WXS.N C3L-03629 PDA WXS blood_normal CPT0198840002 CPT0198840002.WholeExome.RP-1303.bam 30008291625 BAM aligned CPTAC3 c0414b4a-466c-4d46-b07e-1f6ac934e8d3 fa55c3d73e8b9bcec961c7b23bdc5995 {"aliquot_tag": "DUP_d4c15b43", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-03629.DUP_d4c15b43.WXS.N.hg38 C3L-03629 PDA WXS blood_normal CPT0198840002 3047512c-6e80-43e9-abe6-23c303748fb5_wxs_gdc_realn.bam 41585212321 BAM harmonized CPTAC3 c28a3518-a775-405b-b8c9-759a677ea6d2 aa9602cf9886941b626e5d30f98199c2 {"aliquot_tag": "DUP_d4c15b43", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3L-03629.DUP_de6f22c5.WXS.T C3L-03629 PDA WXS tumor CPT0198810034 CPT0198810034.WholeExome.RP-1303.bam 20584068641 BAM aligned CPTAC3 9f5b4209-578b-488b-b98e-1dced95e4f58 59e44665af92d0533b85e4a2fdf0c4d3 {"aliquot_tag": "DUP_de6f22c5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03629.DUP_de6f22c5.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810034 de5de03e-629e-44d0-ba43-3dd9a91e7bcd_wxs_gdc_realn.bam 28495895345 BAM harmonized CPTAC3 5a321292-b48b-4fee-8472-4ad443c8a748 cba2185967fe425944325f58986912e2 {"aliquot_tag": "DUP_de6f22c5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3L-03630.MethArray.Green.T C3L-03630 PDA Methylation_Array tumor CPT0198910008 203561450008_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d268937b-f28f-4bfe-bab5-dc3fe674d81a f4a71092e2cb3bff1a8d6e7231aaa53f {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03630.MethArray.Red.T C3L-03630 PDA Methylation_Array tumor CPT0198910008 203561450008_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 53dd3494-bb5c-45a2-b6d4-c5cf5938393c f639c9e7e929c680f34b569ddbdd43b1 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03630.miRNA-Seq.S28_L005_R1.T C3L-03630 PDA miRNA-Seq tumor CPT0198910011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACAGTG_S28_L005_R1_001.unaln.bam 201073157 BAM S28_L005_R1 unaligned CPTAC3 87eb915e-ce48-4726-b06f-df2635e2cd8c fa5d0ebba13efac7701b81ccbf3bcfb6 {"aliquot_tag": "ALQ_576f676d", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03630.miRNA-Seq.T.hg38 C3L-03630 PDA miRNA-Seq tumor CPT0198910011 8beb0d4d-1339-4e89-a6b4-bc35029379d2_mirnaseq_gdc_realn.bam 229419543 BAM harmonized CPTAC3 01acce44-2d0b-40d2-b51b-dbfbee6a2411 573ef022697faafb024ff4217c5f572d {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor"} -C3L-03630.RNA-Seq.chimeric.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.chimeric.gdc_realn.bam 34888806 BAM chimeric harmonized CPTAC3 eb50e8f2-d8bf-45af-bafd-a8704b774ab3 bd29a1267660cc56594144dfd3e37eeb {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor"} -C3L-03630.RNA-Seq.genomic.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.genomic.gdc_realn.bam 8589298090 BAM genomic harmonized CPTAC3 040abe19-b55d-4aae-a657-328890f61b7c d8722f4f7d53bedb62c7b0271ef1f938 {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor"} -C3L-03630.RNA-Seq.S30_L008_R1.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 4088071151 FASTQ S30_L008_R1 unaligned CPTAC3 abf20b14-f42b-4ee3-9a92-47a0bb993abc 531fa079b9a489d46355fcf1de7759bd {"aliquot_tag": "ALQ_576f676d", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03630.RNA-Seq.S30_L008_R2.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4287119936 FASTQ S30_L008_R2 unaligned CPTAC3 3f467916-1242-4b97-b826-b1d8ccf53dba 0bb5d253d6c7a5fcde08220bae0d1c69 {"aliquot_tag": "ALQ_576f676d", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03630.RNA-Seq.transcriptome.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.transcriptome.gdc_realn.bam 10889059802 BAM transcriptome harmonized CPTAC3 64e38c47-f372-4cc4-b2c7-13c74593f22a 9baa17a39170f06dd33dc94144d011ed {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor"} -C3L-03630.Targeted.T C3L-03630 PDA Targeted_Sequencing tumor CPT0198910008 CPT0198910008.CustomSelection.RP-1303.PDO-18786.bam 6155756525 BAM aligned CPTAC3 8349c74a-a611-4a52-8657-5af5bb64bf69 93acb2bb8e91bdb177631d6ad7592abf {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03630.Targeted.T.hg38 C3L-03630 PDA Targeted_Sequencing tumor CPT0198910008 d2db9a6c-ad14-496e-accd-afcbf09093e7_targetedsequencing_gdc_realn.bam 8646899840 BAM harmonized CPTAC3 60989166-029d-4ec8-b306-85028e72fdf1 6855e440611dbe552e1c37513641cb76 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03630.WGS.N C3L-03630 PDA WGS blood_normal CPT0198940002 CPT0198940002.WholeGenome.RP-1303.bam 53821899243 BAM aligned CPTAC3 ef59fd3e-0d79-47cc-87a9-75e467296ea6 e2ff52fe77fe3b0b1a4a4c966af3b3b5 {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03630.WGS.N.hg38 C3L-03630 PDA WGS blood_normal CPT0198940002 7b5613c5-fbe2-4c47-8aba-ef678ce19f29_wgs_gdc_realn.bam 78103325100 BAM harmonized CPTAC3 e09ba3f3-2b40-48ba-bbd1-4ea6e8f45adb cc754e6175d5f9ec527eecd4fe9ecef9 {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03630.WGS.T C3L-03630 PDA WGS tumor CPT0198910008 CPT0198910008.WholeGenome.RP-1303.bam 52480834712 BAM aligned CPTAC3 9de9dbd9-96f6-42fb-b2ec-647411d7e263 e2b0744ef22940d1b01d915746db2246 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03630.WGS.T.hg38 C3L-03630 PDA WGS tumor CPT0198910008 d2db9a6c-ad14-496e-accd-afcbf09093e7_wgs_gdc_realn.bam 77549247919 BAM harmonized CPTAC3 11aa8479-d92d-46ef-a82c-65e972e8258d 3ef69644e92979cf471f9a53033f4410 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03630.WXS.N C3L-03630 PDA WXS blood_normal CPT0198940002 CPT0198940002.WholeExome.RP-1303.bam 27847988497 BAM aligned CPTAC3 69d2377a-f3ca-47a8-a3df-459c14653b20 edc399f4ed1b617b45d6dd70adb0e38e {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03630.WXS.N.hg38 C3L-03630 PDA WXS blood_normal CPT0198940002 7b5613c5-fbe2-4c47-8aba-ef678ce19f29_wxs_gdc_realn.bam 38405212628 BAM harmonized CPTAC3 a2750cc1-69d9-4ae7-bf41-39aa1bfb8969 ce0fec08d9c3b4b0774451dfa69a5575 {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03630.WXS.T C3L-03630 PDA WXS tumor CPT0198910008 CPT0198910008.WholeExome.RP-1303.bam 56474632254 BAM aligned CPTAC3 e30c6370-35ac-49f8-96f4-c604a75e6a9c d083f2184283cd416c676ac4d5b5d07c {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03630.WXS.T.hg38 C3L-03630 PDA WXS tumor CPT0198910008 d2db9a6c-ad14-496e-accd-afcbf09093e7_wxs_gdc_realn.bam 77788058795 BAM harmonized CPTAC3 a0a78905-e4db-4663-9154-b0586565152f c391aec22eb5617f80eeb4039a4bf010 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor"} -C3L-03632.MethArray.Green.T C3L-03632 PDA Methylation_Array tumor CPT0238440008 203561620050_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c279f908-efd6-4a7b-8b5c-ab9dd49e2579 0708a25ff4aea3e91216ff46e09fe224 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03632.MethArray.Red.T C3L-03632 PDA Methylation_Array tumor CPT0238440008 203561620050_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 079c333e-4755-440f-88b4-5cd483ed3ab3 da7f2cf469485d2597230916bd37a096 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03632.miRNA-Seq.S167_L007_R1.T C3L-03632 PDA miRNA-Seq tumor CPT0238440011 190828_UNC32-K00270_0200_BH7GVJBBXY_GTCCGC_S167_L007_R1_001.unaln.bam 210746466 BAM S167_L007_R1 unaligned CPTAC3 c541191d-9f26-4513-bc60-21e898ae750c 6c0c2970e28789d0b5897161946f6938 {"aliquot_tag": "ALQ_8b5cdbce", "sample": "S167", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03632.miRNA-Seq.T.hg38 C3L-03632 PDA miRNA-Seq tumor CPT0238440011 34d10f3a-eb92-4533-b426-992e0f44d99a_mirnaseq_gdc_realn.bam 238164459 BAM harmonized CPTAC3 b6e98d86-45c6-48c0-ae10-02568713e6a9 748bed67ca2faeba96d86ed88c7dec6f {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor"} -C3L-03632.RNA-Seq.chimeric.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.chimeric.gdc_realn.bam 28361128 BAM chimeric harmonized CPTAC3 19392957-b05c-4b53-ab81-b6dcd3341387 dba5061f514081e38c188d469e790dc1 {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor"} -C3L-03632.RNA-Seq.genomic.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.genomic.gdc_realn.bam 7436410921 BAM genomic harmonized CPTAC3 d1ca9add-b4ba-4e6d-b78e-8362046466e7 765a4044b52ca804f505904c11ac0a6e {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor"} -C3L-03632.RNA-Seq.S17_L005_R1.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R1_001.fastq.gz 3348955246 FASTQ S17_L005_R1 unaligned CPTAC3 c82f2b79-f7ea-4238-9d3a-fdbe0b526d34 490576e1864bda5da5c8b35d31c6e689 {"aliquot_tag": "ALQ_8b5cdbce", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03632.RNA-Seq.S17_L005_R2.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R2_001.fastq.gz 3784048246 FASTQ S17_L005_R2 unaligned CPTAC3 ac072a22-6ff9-40e1-9fe1-d7902d8977fc 8dff9c98688864c5ae5be2e79afce97f {"aliquot_tag": "ALQ_8b5cdbce", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03632.RNA-Seq.transcriptome.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.transcriptome.gdc_realn.bam 9545303915 BAM transcriptome harmonized CPTAC3 4ca183cb-4c20-4760-ab68-6be4d0be959f 5aaa90fccd8f238572314ef80c516bd3 {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor"} -C3L-03632.Targeted.T C3L-03632 PDA Targeted_Sequencing tumor CPT0238440008 CPT0238440008.CustomSelection.RP-1303.PDO-18786.bam 3995879921 BAM aligned CPTAC3 64e2304a-323c-454c-b5c7-957ac3c96813 46659096a8b5e9a2e6168c46bd5e7db9 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03632.Targeted.T.hg38 C3L-03632 PDA Targeted_Sequencing tumor CPT0238440008 559c33be-d2ec-459b-b8bf-29f57ef07918_targetedsequencing_gdc_realn.bam 5671566319 BAM harmonized CPTAC3 73c0d4eb-1059-4b52-b64a-7f0f45813e4f f590941a2ebcd78da07f133a3f8e32f0 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03632.WGS.N C3L-03632 PDA WGS blood_normal CPT0238470002 CPT0238470002.WholeGenome.RP-1303.bam 64592761951 BAM aligned CPTAC3 3ba0bafd-d795-464f-acf2-2952c94ab745 20de9d1d14259f9761be9c00a6e14781 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-03632.WGS.N.hg38 C3L-03632 PDA WGS blood_normal CPT0238470002 9c99ac14-05ba-48ee-8df6-8f7adcae4db0_wgs_gdc_realn.bam 94168440249 BAM harmonized CPTAC3 a33a5a91-4ee5-4d6c-a371-0fe7678caadf f022dca8a1a102078fcf91e3fb03cb51 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-03632.WGS.T C3L-03632 PDA WGS tumor CPT0238440008 CPT0238440008.WholeGenome.RP-1303.bam 58326498258 BAM aligned CPTAC3 ece19545-d8b7-45b1-bbb5-924617f85b6a 13ceb1cdc31f0061b5583c35a2ef198a {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03632.WGS.T.hg38 C3L-03632 PDA WGS tumor CPT0238440008 559c33be-d2ec-459b-b8bf-29f57ef07918_wgs_gdc_realn.bam 85751016769 BAM harmonized CPTAC3 846890f2-15c4-4071-9114-2d6fc5b8d20f 862812bd4c2807d4d450a7162cc2943d {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03632.WXS.N C3L-03632 PDA WXS blood_normal CPT0238470002 CPT0238470002.WholeExome.RP-1303.bam 27871062443 BAM aligned CPTAC3 74aa3941-4096-46ee-a388-e25e19881b4d 44bd72034771b2eea3239f5aa1c4de21 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-03632.WXS.N.hg38 C3L-03632 PDA WXS blood_normal CPT0238470002 9c99ac14-05ba-48ee-8df6-8f7adcae4db0_wxs_gdc_realn.bam 38166130809 BAM harmonized CPTAC3 f8382823-e167-44ff-8de8-649171ef4768 e1d993660faafc64fbc6e64701bd9db8 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal"} -C3L-03632.WXS.T C3L-03632 PDA WXS tumor CPT0238440008 CPT0238440008.WholeExome.RP-1303.bam 60007733437 BAM aligned CPTAC3 82ef88de-1ab9-4955-a536-491c828d2903 bfce26a4d5155c2e6618ee870e015f56 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03632.WXS.T.hg38 C3L-03632 PDA WXS tumor CPT0238440008 559c33be-d2ec-459b-b8bf-29f57ef07918_wxs_gdc_realn.bam 83729218204 BAM harmonized CPTAC3 f5b93fdb-8fd8-4293-b736-fda3569bea85 47854cdc24b5504660bf4391fe9324f9 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor"} -C3L-03635.MethArray.Green.T C3L-03635 PDA Methylation_Array tumor CPT0238530008 203561620162_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 058dd7b1-7bfd-40de-9fc4-6c8bacd66ef6 4f9ceaa72f56c03423b9fabf434d537b {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03635.MethArray.Red.T C3L-03635 PDA Methylation_Array tumor CPT0238530008 203561620162_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 cf5ffca3-f18c-4e33-897c-876bba315f55 6186c6557afacf42bdc425cf2dd25d35 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03635.miRNA-Seq.S42_L005_R1.T C3L-03635 PDA miRNA-Seq tumor CPT0238530011 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGAAA_S42_L005_R1_001.unaln.bam 287711876 BAM S42_L005_R1 unaligned CPTAC3 357f25b0-bbc4-46e2-a22c-c58ded55fdf6 6bc77978f48d0c6f74fcb0394f274215 {"aliquot_tag": "ALQ_f220d47b", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03635.miRNA-Seq.T.hg38 C3L-03635 PDA miRNA-Seq tumor CPT0238530011 fab92cad-1800-418a-b6dd-24fc289ddd0b_mirnaseq_gdc_realn.bam 326293982 BAM harmonized CPTAC3 4f460bd7-5278-4b57-b395-7658f31cd5db 360d942b6b7906f33347ea620c13b9c7 {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor"} -C3L-03635.RNA-Seq.chimeric.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.chimeric.gdc_realn.bam 35098372 BAM chimeric harmonized CPTAC3 5290d988-76b8-440a-be30-e40d7d3f392b acf9fb3d57ba2a7fa8013c4d79f91e70 {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor"} -C3L-03635.RNA-Seq.genomic.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.genomic.gdc_realn.bam 8493598930 BAM genomic harmonized CPTAC3 a7855ced-4a1f-491c-b029-8b386f024022 457adcd4acafc895616ac0f721bfcedd {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor"} -C3L-03635.RNA-Seq.S20_L005_R1.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4130886211 FASTQ S20_L005_R1 unaligned CPTAC3 e6d23182-aa4a-496e-b75f-2fec19d6bce0 ecd90d1e18773b32006bb2f2c19de4a5 {"aliquot_tag": "ALQ_f220d47b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03635.RNA-Seq.S20_L005_R2.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4451462225 FASTQ S20_L005_R2 unaligned CPTAC3 02a17205-4f12-46b3-8ea5-fa2c1d3c5282 8c5edffebbb8912219524c4da8ebdbc7 {"aliquot_tag": "ALQ_f220d47b", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03635.RNA-Seq.transcriptome.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.transcriptome.gdc_realn.bam 11431800716 BAM transcriptome harmonized CPTAC3 8b8909db-7f4f-4ff1-83f9-c25888246f7b 9dffea1be82aef0855518a8dc8f595fb {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor"} -C3L-03635.Targeted.T C3L-03635 PDA Targeted_Sequencing tumor CPT0238530008 CPT0238530008.CustomSelection.RP-1303.PDO-18786.bam 4977296392 BAM aligned CPTAC3 9461fe2f-538f-428a-bc1b-7cd7ee3c272a 5491f66b8089e5bc12ecc445220ef3d0 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03635.Targeted.T.hg38 C3L-03635 PDA Targeted_Sequencing tumor CPT0238530008 0afced53-4194-44c8-b4f5-a37c910c50a9_targetedsequencing_gdc_realn.bam 7145861939 BAM harmonized CPTAC3 d402b214-6256-427b-a75e-19b15c11a661 22af1ed6f0a3fadc4350491f03435f36 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03635.WGS.N C3L-03635 PDA WGS blood_normal CPT0238560002 CPT0238560002.WholeGenome.RP-1303.bam 76018902811 BAM aligned CPTAC3 3d4db50f-6a46-481f-9e8f-5c85c6b08e09 24331b01b0a1deac124471dbe861d745 {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03635.WGS.N.hg38 C3L-03635 PDA WGS blood_normal CPT0238560002 93b38407-875a-49d9-b0ab-e68b0e9f61c2_wgs_gdc_realn.bam 110439477303 BAM harmonized CPTAC3 c4ac60b3-a112-4687-ad1e-8a155be5bfe1 adedf09ecdccfd23028295d57d804ebd {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03635.WGS.T C3L-03635 PDA WGS tumor CPT0238530008 CPT0238530008.WholeGenome.RP-1303.bam 66302432903 BAM aligned CPTAC3 f1a5a168-df1a-4a25-a7d5-7318fc7ac216 9891b6b62f403dda5ef9bee87c4dd204 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03635.WGS.T.hg38 C3L-03635 PDA WGS tumor CPT0238530008 0afced53-4194-44c8-b4f5-a37c910c50a9_wgs_gdc_realn.bam 97181064755 BAM harmonized CPTAC3 cca604ac-9620-4357-8de7-3f1f01e7aad7 12e4369f0d1db4204e56a388b57bb5a5 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03635.WXS.N C3L-03635 PDA WXS blood_normal CPT0238560002 CPT0238560002.WholeExome.RP-1303.bam 24648518961 BAM aligned CPTAC3 e318f49f-dd6a-4689-a979-a995f45aa1c8 3529af13c372807b7b428b15b0290162 {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03635.WXS.N.hg38 C3L-03635 PDA WXS blood_normal CPT0238560002 93b38407-875a-49d9-b0ab-e68b0e9f61c2_wxs_gdc_realn.bam 34135989139 BAM harmonized CPTAC3 2dfd2110-1402-4c6f-9f36-51129a20e857 84189ba3e84fd73fa503990a96505516 {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal"} -C3L-03635.WXS.T C3L-03635 PDA WXS tumor CPT0238530008 CPT0238530008.WholeExome.RP-1303.bam 73346661603 BAM aligned CPTAC3 9a2c7027-98cb-4cfa-9422-7ef4453d5510 4cdb11116d26fd5003676e59bf304199 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03635.WXS.T.hg38 C3L-03635 PDA WXS tumor CPT0238530008 0afced53-4194-44c8-b4f5-a37c910c50a9_wxs_gdc_realn.bam 103383883332 BAM harmonized CPTAC3 20541cf8-ecbf-4936-9eb8-fdc7728c9f4c 48c01737b082e833b3ab1d0bc6f20774 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor"} -C3L-03639.MethArray.Green.T C3L-03639 PDA Methylation_Array tumor CPT0238610012 203561620049_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d2f36363-586e-4b76-9722-3041dd07d137 51c10142582438304e1c7fc1160068ed {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03639.MethArray.Red.T C3L-03639 PDA Methylation_Array tumor CPT0238610012 203561620049_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 06fcc68e-9f75-495b-9d62-884403aa00fc 19ace291c961ec94a7fc1ab37c4feae0 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03639.miRNA-Seq.S165_L008_R1.T C3L-03639 PDA miRNA-Seq tumor CPT0238610015 190828_UNC32-K00270_0200_BH7GVJBBXY_CTCAGA_S165_L008_R1_001.unaln.bam 242890877 BAM S165_L008_R1 unaligned CPTAC3 325f7a6c-da2e-4463-a075-ad5d5673eb66 c85f0f5b92e0c4777ca688a071ed460e {"aliquot_tag": "ALQ_91931ac", "sample": "S165", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03639.miRNA-Seq.T.hg38 C3L-03639 PDA miRNA-Seq tumor CPT0238610015 930b6301-6ef5-440a-ab17-2f9c77eedca5_mirnaseq_gdc_realn.bam 270090382 BAM harmonized CPTAC3 5b255f8b-1770-4098-8f51-d0bcbabfa6e7 e0a7bc74f393a2355ba9caa7172cceb2 {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor"} -C3L-03639.RNA-Seq.chimeric.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.chimeric.gdc_realn.bam 86745622 BAM chimeric harmonized CPTAC3 107da9a9-6d13-4c37-82e6-b513b85df502 918cb29a35566410f891b9c33506beff {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor"} -C3L-03639.RNA-Seq.genomic.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.genomic.gdc_realn.bam 10097807483 BAM genomic harmonized CPTAC3 85baebdd-8866-4c2f-8d7b-4c537bebe5cf c2a332c178ab2f1a2ef824f7309eab84 {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor"} -C3L-03639.RNA-Seq.S9_L003_R1.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R1_001.fastq.gz 4127318283 FASTQ S9_L003_R1 unaligned CPTAC3 78529b12-483f-4a95-95b1-22a760125a08 4949d8c8ec6c0093ac2864fbb3692420 {"aliquot_tag": "ALQ_91931ac", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03639.RNA-Seq.S9_L003_R2.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R2_001.fastq.gz 4652080851 FASTQ S9_L003_R2 unaligned CPTAC3 71867229-fafe-45c5-bc56-344e7c4c0a79 93d44fb9d79a14cb63b46a57c072228e {"aliquot_tag": "ALQ_91931ac", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03639.RNA-Seq.transcriptome.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.transcriptome.gdc_realn.bam 11345201832 BAM transcriptome harmonized CPTAC3 fe86ee18-dd0c-4afe-a178-162673b2097c d754194b927af8abb198dbfbc083ea84 {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor"} -C3L-03639.Targeted.T C3L-03639 PDA Targeted_Sequencing tumor CPT0238610012 CPT0238610012.CustomSelection.RP-1303.PDO-18786.bam 5120239206 BAM aligned CPTAC3 eabb6d66-77eb-4808-99f4-cf05f3b12734 0635bc8a0b8ce896c1bcfe72ac4226d5 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03639.Targeted.T.hg38 C3L-03639 PDA Targeted_Sequencing tumor CPT0238610012 18a2e2df-4b2a-4444-8a37-134b95717eba_targetedsequencing_gdc_realn.bam 7026319712 BAM harmonized CPTAC3 4dab60b5-2699-4e99-9e9f-d5615cbb1e1e 6deba3421bc5e171611a409013984723 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03639.WGS.N C3L-03639 PDA WGS blood_normal CPT0238650002 CPT0238650002.WholeGenome.RP-1303.bam 76629548908 BAM aligned CPTAC3 87217a5e-4619-4831-b9c8-fc968a768f52 bea01515a0c8cdf4cb301a266227a87a {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03639.WGS.N.hg38 C3L-03639 PDA WGS blood_normal CPT0238650002 7c35736c-19f3-4386-b030-bf10f883d72b_wgs_gdc_realn.bam 113622880967 BAM harmonized CPTAC3 1121034f-184d-4f0d-95bb-eed5db57ce05 135a989c51a1cb94705721f35c5b3dad {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03639.WGS.T C3L-03639 PDA WGS tumor CPT0238610012 CPT0238610012.WholeGenome.RP-1303.bam 70612859906 BAM aligned CPTAC3 49113e38-0b10-4152-8bbc-2fd7a5efdb25 89437ae65be8d2cacd9c9edb77a7224a {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03639.WGS.T.hg38 C3L-03639 PDA WGS tumor CPT0238610012 18a2e2df-4b2a-4444-8a37-134b95717eba_wgs_gdc_realn.bam 103689067042 BAM harmonized CPTAC3 594965a2-2fa4-40a2-b479-392b5e0a4355 3b546c4f540e8a41cce353a56e4c7827 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03639.WXS.N C3L-03639 PDA WXS blood_normal CPT0238650002 CPT0238650002.WholeExome.RP-1303.bam 26909053646 BAM aligned CPTAC3 9a07cbc6-45a8-40c4-acfa-d4d2a8bd37e6 fbbe89d17af1bd494475eb6653a5d092 {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03639.WXS.N.hg38 C3L-03639 PDA WXS blood_normal CPT0238650002 7c35736c-19f3-4386-b030-bf10f883d72b_wxs_gdc_realn.bam 36389282815 BAM harmonized CPTAC3 4bbdb4ea-2f95-447f-8b4d-b885e455be04 471d560711d690902dafbb2c4f94d752 {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03639.WXS.T C3L-03639 PDA WXS tumor CPT0238610012 CPT0238610012.WholeExome.RP-1303.bam 49733341063 BAM aligned CPTAC3 0dfec1a8-3983-4a9e-89a7-5afe2cdb8139 667334aa2a7598f3082ac5a44186d74f {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03639.WXS.T.hg38 C3L-03639 PDA WXS tumor CPT0238610012 18a2e2df-4b2a-4444-8a37-134b95717eba_wxs_gdc_realn.bam 69138382004 BAM harmonized CPTAC3 ed89ebd4-527a-45f0-9907-34c4dedb5497 1d0554ef58f6eb37262050b3567cf406 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor"} -C3L-03642.MethArray.Green.A C3L-03642 LUAD Methylation_Array tissue_normal CPT0216830006 203273630258_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 533f9704-5d66-49a7-bfd9-52754a6796ab 8c453d0d3904007f7fbd4423ffddf993 {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.MethArray.Green.T C3L-03642 LUAD Methylation_Array tumor CPT0216820006 203561620086_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f862c7b8-a38e-4646-9333-bf41ce752a56 10148ad609e47e3d648f4e2468c6db83 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor"} -C3L-03642.MethArray.Red.A C3L-03642 LUAD Methylation_Array tissue_normal CPT0216830006 203273630258_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 7d108a49-2c59-435c-9f10-a65750793ea7 0bdc47dedb7499bd81cbb83a0a75423a {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.MethArray.Red.T C3L-03642 LUAD Methylation_Array tumor CPT0216820006 203561620086_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 69bf7845-de5a-4081-8c2b-a5aec5f45317 69b330a7ccb5f96b6f4fb15701fdaaaf {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor"} -C3L-03642.miRNA-Seq.A.hg38 C3L-03642 LUAD miRNA-Seq tissue_normal CPT0216830009 9c530534-236d-4544-bc64-de7239afac87_mirnaseq_gdc_realn.bam 241718180 BAM harmonized CPTAC3 88fb3827-6ae0-44cd-ad7b-0d814c64b01c 5a027fa8687d543a8aa8bd34671a4e58 {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.miRNA-Seq.S39_L006_R1.A C3L-03642 LUAD miRNA-Seq tissue_normal CPT0216830009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGAAG_S39_L006_R1_001.unaln.bam 213263571 BAM S39_L006_R1 unaligned CPTAC3 09216ec8-603a-4d17-8677-8a473065d738 5665c8ed9701e875e74da71698e5d40f {"aliquot_tag": "ALQ_4b6402f6", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.miRNA-Seq.S7_L005_R1.T C3L-03642 LUAD miRNA-Seq tumor CPT0216820009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGCTAC_S7_L005_R1_001.unaln.bam 253320443 BAM S7_L005_R1 unaligned CPTAC3 e15fee5d-131b-459a-bf1d-e71bca132837 878cb20e22bec548e86d6115dd8d92a4 {"aliquot_tag": "ALQ_76042b46", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03642.miRNA-Seq.T.hg38 C3L-03642 LUAD miRNA-Seq tumor CPT0216820009 22d72ea6-dbe9-469a-8947-70ed5135854e_mirnaseq_gdc_realn.bam 275060230 BAM harmonized CPTAC3 d52644be-6e75-4422-9679-548cab39f617 abf58ea7feb7d87a773a60329f93150b {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor"} -C3L-03642.RNA-Seq.chimeric.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.chimeric.gdc_realn.bam 27377253 BAM chimeric harmonized CPTAC3 b139a9b2-c8b5-4188-a1c6-a1ee2063a83b 415ca164c850a8406dc2671b9f2efc4a {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.RNA-Seq.chimeric.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.chimeric.gdc_realn.bam 56304405 BAM chimeric harmonized CPTAC3 62f1ebe9-b4c0-454c-8c20-ac3af6a3ba6e 9e708b07705f01da873761b113e30da8 {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor"} -C3L-03642.RNA-Seq.genomic.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.genomic.gdc_realn.bam 15862343901 BAM genomic harmonized CPTAC3 c304f603-4ff0-4d5f-89da-8ab80ef485ef fea0d2c61e37f091eb60847f1320da48 {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.RNA-Seq.genomic.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.genomic.gdc_realn.bam 12611642563 BAM genomic harmonized CPTAC3 c3882db6-cdff-4d48-a42f-1124b17ef153 32b6be0d12e602421e47dc8f5afa1d83 {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor"} -C3L-03642.RNA-Seq.S13_L004_R1.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R1_001.fastq.gz 3991831524 FASTQ S13_L004_R1 unaligned CPTAC3 1cde7d1e-d67c-4092-96d7-2690736c1919 7f082c97aeb00e212529de328560a970 {"aliquot_tag": "ALQ_76042b46", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03642.RNA-Seq.S13_L004_R2.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R2_001.fastq.gz 4544229711 FASTQ S13_L004_R2 unaligned CPTAC3 8df56ec4-7e8a-4e44-904a-c2e5bc9a3584 638b6514d1af8c4c3195d00b85a4d50a {"aliquot_tag": "ALQ_76042b46", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03642.RNA-Seq.S4_L001_R1.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4642044745 FASTQ S4_L001_R1 unaligned CPTAC3 56ddbe29-682c-4758-8a31-b0ee38465644 2d82b214a1ee85832238390ca84d10a5 {"aliquot_tag": "ALQ_4b6402f6", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.RNA-Seq.S4_L001_R2.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4919837227 FASTQ S4_L001_R2 unaligned CPTAC3 9c736235-5c0e-4ee4-8f21-bf1969b5a99e 964004860f813ee9edad131068f95514 {"aliquot_tag": "ALQ_4b6402f6", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.RNA-Seq.transcriptome.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.transcriptome.gdc_realn.bam 9700307783 BAM transcriptome harmonized CPTAC3 42da128b-91f5-4f46-b036-31412254ef33 095537dc565ae33284138ecd58a73048 {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.RNA-Seq.transcriptome.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.transcriptome.gdc_realn.bam 9572301271 BAM transcriptome harmonized CPTAC3 e15a53a2-3bd0-42af-ad83-c9d4c62de216 73e9ff1f34aeeafbe52800cc084faf95 {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor"} -C3L-03642.WGS.N C3L-03642 LUAD WGS blood_normal CPT0217680002 CPT0217680002.WholeGenome.RP-1303.bam 69402234421 BAM aligned CPTAC3 c81f46ca-0bec-46b9-b5d7-5d2a59966819 cb976f26df8d7f24fe3cbb60cbc2584e {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-03642.WGS.N.hg38 C3L-03642 LUAD WGS blood_normal CPT0217680002 92c97b23-8846-4d06-b2b2-670f5bb378b7_wgs_gdc_realn.bam 101404143412 BAM harmonized CPTAC3 354b9f63-8a25-4d68-ac09-fd19d420622d 3c566e15784445d754e87818200d6fd6 {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-03642.WGS.T C3L-03642 LUAD WGS tumor CPT0216820006 CPT0216820006.WholeGenome.RP-1303.bam 82848999991 BAM aligned CPTAC3 1f5957a3-87d1-4f52-8eb3-6ece5c1e7771 2ab221535501bc0a85a64e695495db87 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor"} -C3L-03642.WGS.T.hg38 C3L-03642 LUAD WGS tumor CPT0216820006 edea2be0-85ea-4fc2-956e-8dd70dc6286e_wgs_gdc_realn.bam 121087808075 BAM harmonized CPTAC3 b622dd0f-01de-4a90-8824-bfae022a3a60 a2f348c6e1cb2dee61dfb4251544b7f0 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor"} -C3L-03642.WXS.A C3L-03642 LUAD WXS tissue_normal CPT0216830006 CPT0216830006.WholeExome.RP-1303.bam 26429235411 BAM aligned CPTAC3 a0ad9913-2d75-4f11-874d-40042e715f53 5fda7ba8ff1cf8464f314ef30a296d4c {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.WXS.A.hg38 C3L-03642 LUAD WXS tissue_normal CPT0216830006 697da1aa-701c-49f2-9451-e8cbc149f95a_wxs_gdc_realn.bam 36370594682 BAM harmonized CPTAC3 da768d35-2441-40f1-8cca-7637109824d7 be1f3d22d00824a0fa2dca5dee7ff52d {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03642.WXS.N C3L-03642 LUAD WXS blood_normal CPT0217680002 CPT0217680002.WholeExome.RP-1303.bam 33523248414 BAM aligned CPTAC3 8497c3bc-4e47-4978-8826-03e7b03dd9bf ed9f3061fb864dcb9467b3f17898c321 {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-03642.WXS.N.hg38 C3L-03642 LUAD WXS blood_normal CPT0217680002 92c97b23-8846-4d06-b2b2-670f5bb378b7_wxs_gdc_realn.bam 46293400276 BAM harmonized CPTAC3 3bcdcede-39d7-4bd6-987b-a9f617d485c3 cc03228e8871b88d857be3012ebdc63d {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal"} -C3L-03642.WXS.T C3L-03642 LUAD WXS tumor CPT0216820006 CPT0216820006.WholeExome.RP-1303.bam 27164846497 BAM aligned CPTAC3 3b2fdc6a-afd9-4dca-b7eb-8a874f7fc6d9 7e6a550ba9b94344854e5116e430bc5f {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor"} -C3L-03642.WXS.T.hg38 C3L-03642 LUAD WXS tumor CPT0216820006 edea2be0-85ea-4fc2-956e-8dd70dc6286e_wxs_gdc_realn.bam 37302438794 BAM harmonized CPTAC3 fdc7b8a4-efdd-4e1a-be12-967295a2ed75 f516a6428e9e9b349d56ec1b0ce1d967 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor"} -C3L-03678.MethArray.Green.T C3L-03678 LSCC Methylation_Array tumor CPT0190550006 203219670150_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 34e8a14a-27da-40b3-8490-1d2f5f409310 39effa47f6b2e451625d0e5d7b054633 {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor"} -C3L-03678.MethArray.Red.T C3L-03678 LSCC Methylation_Array tumor CPT0190550006 203219670150_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e8f0e087-58c3-444e-b356-507e2f403760 493cb0e68e9733a5ef6cb878845934bb {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor"} -C3L-03678.miRNA-Seq.S37_L004_R1.T C3L-03678 LSCC miRNA-Seq tumor CPT0190550009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTAGCT_S37_L004_R1_001.unaln.bam 228734720 BAM S37_L004_R1 unaligned CPTAC3 220546fb-0208-4610-b389-b8dc523c1ef7 40fd1bad4428703b3e53cdf871739be4 {"aliquot_tag": "ALQ_f102f6c2", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03678.miRNA-Seq.T.hg38 C3L-03678 LSCC miRNA-Seq tumor CPT0190550009 e8b547fc-fdea-45f5-9396-ad4fc3d07f91_mirnaseq_gdc_realn.bam 253330764 BAM harmonized CPTAC3 18b0a311-e11e-4685-a264-ba0c40b62743 da21a2f3a96021c7b1e627e9356bbd0b {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor"} -C3L-03678.RNA-Seq.chimeric.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.chimeric.gdc_realn.bam 217081201 BAM chimeric harmonized CPTAC3 d9cba597-bd33-444a-9e7e-c8f7eab992f5 cf24e281f2d4ed653d035aa9ed80e008 {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor"} -C3L-03678.RNA-Seq.genomic.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.genomic.gdc_realn.bam 7756956740 BAM genomic harmonized CPTAC3 edfcf470-b66f-4de2-8518-4420df899547 3d0ee9a4e6c64e59303809be68bc1b9f {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor"} -C3L-03678.RNA-Seq.S11_L003_R1.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3357518606 FASTQ S11_L003_R1 unaligned CPTAC3 2fdcf9b2-da83-4070-b39d-87e70b928eb6 a9abde223c0891efefd004cc0120ff38 {"aliquot_tag": "ALQ_f102f6c2", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03678.RNA-Seq.S11_L003_R2.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 3529872598 FASTQ S11_L003_R2 unaligned CPTAC3 b44c7e5e-1df2-4a2b-8ef1-eb051e40af8e 8da475c9a79ed55f13cf33f3f1dd2238 {"aliquot_tag": "ALQ_f102f6c2", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03678.RNA-Seq.transcriptome.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.transcriptome.gdc_realn.bam 8613835147 BAM transcriptome harmonized CPTAC3 5f74a724-23e8-46c1-a3c9-3a7ddc511e2b 71ebc25f8b7fdad5ae4726f3d407ca4b {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor"} -C3L-03678.WGS.N C3L-03678 LSCC WGS blood_normal CPT0191230002 CPT0191230002.WholeGenome.RP-1303.bam 67092742984 BAM aligned CPTAC3 dc04e96c-2966-4ab0-b529-fb595243293e fe1d0e569656a019046fa804e7c0fc56 {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03678.WGS.N.hg38 C3L-03678 LSCC WGS blood_normal CPT0191230002 0acf70c7-0014-4247-b7e3-674203be4121_wgs_gdc_realn.bam 95620288289 BAM harmonized CPTAC3 4ed1b874-7344-4479-b1ea-77d7dec97040 36b02c9f33cc9bc8778def97251290f2 {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03678.WGS.T C3L-03678 LSCC WGS tumor CPT0190550006 CPT0190550006.WholeGenome.RP-1303.bam 61731991077 BAM aligned CPTAC3 88af9603-bd17-42c5-8e8d-f42e9f23cf4f cfe61d7c8049814eb72c471c76f00b7d {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor"} -C3L-03678.WGS.T.hg38 C3L-03678 LSCC WGS tumor CPT0190550006 e2a1d57f-6440-4101-81b8-226346ca0ae2_wgs_gdc_realn.bam 90582949605 BAM harmonized CPTAC3 1f387e5d-8d4e-4123-abe7-4f07456d80cd 7df357d49c86d7149c5bef1bd625e8f8 {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor"} -C3L-03678.WXS.N C3L-03678 LSCC WXS blood_normal CPT0191230002 CPT0191230002.WholeExome.RP-1303.bam 26751713988 BAM aligned CPTAC3 4461c0df-797f-44ce-938f-af8c4ab23e1c f672367db55ac84bc4a0d9bc24c33b11 {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03678.WXS.N.hg38 C3L-03678 LSCC WXS blood_normal CPT0191230002 0acf70c7-0014-4247-b7e3-674203be4121_wxs_gdc_realn.bam 36639058133 BAM harmonized CPTAC3 26abe382-68a7-49e1-8739-0012eccaaa2c 3fd7ec07fdd11d4f518cee69106e899c {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal"} -C3L-03678.WXS.T C3L-03678 LSCC WXS tumor CPT0190550006 CPT0190550006.WholeExome.RP-1303.bam 31798710611 BAM aligned CPTAC3 27229e24-a7ab-4272-aafd-64c925c4a922 94629b2c1468bbdc7284a3d2be11eecf {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor"} -C3L-03678.WXS.T.hg38 C3L-03678 LSCC WXS tumor CPT0190550006 e2a1d57f-6440-4101-81b8-226346ca0ae2_wxs_gdc_realn.bam 44605962217 BAM harmonized CPTAC3 7f1c96d6-8cab-436a-a46d-b55d08be1e07 45e203cca2723ed5f4d771ff4948cfc6 {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor"} -C3L-03679.MethArray.Green.A C3L-03679 LUAD Methylation_Array tissue_normal CPT0189960006 203273630261_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 933857ef-2c23-46f4-b381-3c69f4ed534d 65651170ca2bce793ef7bcedec76ebd1 {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.MethArray.Green.T C3L-03679 LUAD Methylation_Array tumor CPT0189950006 203561450054_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9ff45896-4436-479c-860d-5f06879ab204 cd1b26eb05255a5d6a4a6abe4878864a {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor"} -C3L-03679.MethArray.Red.A C3L-03679 LUAD Methylation_Array tissue_normal CPT0189960006 203273630261_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 648ad74c-4161-42a7-b88b-b90172633e7a c16eee5af94e02904c9e063b9f480e5f {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.MethArray.Red.T C3L-03679 LUAD Methylation_Array tumor CPT0189950006 203561450054_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 ff66e724-2410-4b0c-a51e-47ed855f68a7 e3f90c7f92f8b542321bc047e5301131 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor"} -C3L-03679.miRNA-Seq.A.hg38 C3L-03679 LUAD miRNA-Seq tissue_normal CPT0189960009 8f77351a-6e8d-4c06-affd-d35affccdc28_mirnaseq_gdc_realn.bam 309884801 BAM harmonized CPTAC3 a0f286d3-d01a-4db1-b4d4-f4a9ef722099 5171b779ae5f9f9079adc98108aad381 {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.miRNA-Seq.S13_L005_R1.T C3L-03679 LUAD miRNA-Seq tumor CPT0189950009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTAGAG_S13_L005_R1_001.unaln.bam 214376449 BAM S13_L005_R1 unaligned CPTAC3 3e07dc52-9ded-4b62-8186-4095f74c7866 1ea0086b3ec023f6b8faf9001673bbd9 {"aliquot_tag": "ALQ_dff273f4", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03679.miRNA-Seq.S29_L007_R1.A C3L-03679 LUAD miRNA-Seq tissue_normal CPT0189960009 190712_UNC32-K00270_0192_BH7HL3BBXY_GCCAAT_S29_L007_R1_001.unaln.bam 267944270 BAM S29_L007_R1 unaligned CPTAC3 0d78f145-d48d-408e-9080-cb8687002434 cfbcb6b5da4d64cdcacfb0e2ad42a818 {"aliquot_tag": "ALQ_98520924", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.miRNA-Seq.T.hg38 C3L-03679 LUAD miRNA-Seq tumor CPT0189950009 156bde3e-e33d-485b-9c69-df013ac52b8e_mirnaseq_gdc_realn.bam 240909199 BAM harmonized CPTAC3 d31047d1-0d36-4a08-8962-815a651e843f 0b32b912a8bf74a26aac68fbd10b4c30 {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor"} -C3L-03679.RNA-Seq.chimeric.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.chimeric.gdc_realn.bam 45173822 BAM chimeric harmonized CPTAC3 207efe2b-45da-4355-9bf3-a0afe75f567b 485079b9125140d62bf25b2ad1044f58 {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.RNA-Seq.chimeric.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.chimeric.gdc_realn.bam 27400580 BAM chimeric harmonized CPTAC3 07de0de5-b7d9-4ffc-8536-594694b76634 e620c47a31bc7f1bcf2007964942eaf0 {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor"} -C3L-03679.RNA-Seq.genomic.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.genomic.gdc_realn.bam 11181894851 BAM genomic harmonized CPTAC3 29486dd0-2ed8-4bae-8551-dd6c21ca2f0d c5970caf0adb280d8348584e3e421af2 {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.RNA-Seq.genomic.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.genomic.gdc_realn.bam 12234201424 BAM genomic harmonized CPTAC3 f9061089-53cc-42c6-9de3-53972b5a7fae d3a9a18e69c8f25a2fae0d90023dd91e {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor"} -C3L-03679.RNA-Seq.S20_L006_R1.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R1_001.fastq.gz 3912453454 FASTQ S20_L006_R1 unaligned CPTAC3 24dd0a52-de16-443b-b235-a66edc995dd9 98833c65c96efbecdbaa008fba68fd74 {"aliquot_tag": "ALQ_98520924", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.RNA-Seq.S20_L006_R2.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R2_001.fastq.gz 4119306888 FASTQ S20_L006_R2 unaligned CPTAC3 309593c7-ba2a-4bb7-8152-946cf6211b80 7fe587a75fcfc44a992f1ac03fadcb05 {"aliquot_tag": "ALQ_98520924", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.RNA-Seq.S5_L002_R1.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R1_001.fastq.gz 3747373205 FASTQ S5_L002_R1 unaligned CPTAC3 e2a66652-aa64-4bfa-9f7b-3aad99ef5534 12c39f75b656ddcaaf917427ce2b120d {"aliquot_tag": "ALQ_dff273f4", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03679.RNA-Seq.S5_L002_R2.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R2_001.fastq.gz 4178458008 FASTQ S5_L002_R2 unaligned CPTAC3 298c28c1-65c7-435c-9788-5053083e8084 e63748fa4fba2c9b8797b70afc331cdd {"aliquot_tag": "ALQ_dff273f4", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03679.RNA-Seq.transcriptome.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.transcriptome.gdc_realn.bam 8343357055 BAM transcriptome harmonized CPTAC3 9641af35-24fc-4f50-8a35-f3e87f34089f 9f04f59395985b2c1a7366373a182a6b {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.RNA-Seq.transcriptome.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.transcriptome.gdc_realn.bam 8674749414 BAM transcriptome harmonized CPTAC3 9dceda4c-e3bb-46d9-8339-1628faa9fb49 3d36915749c725437cfa980a5ad8e06d {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor"} -C3L-03679.WGS.N C3L-03679 LUAD WGS blood_normal CPT0191100002 CPT0191100002.WholeGenome.RP-1303.bam 71414866252 BAM aligned CPTAC3 ad535a9e-0ad7-47e2-9118-e1f56c3c9b77 f93e8a09fa890e5c2269ecb5629c8738 {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal"} -C3L-03679.WGS.N.hg38 C3L-03679 LUAD WGS blood_normal CPT0191100002 e8f894ad-e0c8-4dd8-b72e-1336b3e1ef3b_wgs_gdc_realn.bam 103667715600 BAM harmonized CPTAC3 92c6aeed-036c-44a9-99bd-52b38f97da15 fef197cd164b8a84dd2e4486e4935ffa {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal"} -C3L-03679.WGS.T C3L-03679 LUAD WGS tumor CPT0189950006 CPT0189950006.WholeGenome.RP-1303.bam 60956376125 BAM aligned CPTAC3 64a977be-dfae-4f12-b664-b96cceef3201 f21fdc7d0738da516212a621776763d5 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor"} -C3L-03679.WGS.T.hg38 C3L-03679 LUAD WGS tumor CPT0189950006 0846a033-ae31-467a-a838-707bbc3f2d8d_wgs_gdc_realn.bam 88329417448 BAM harmonized CPTAC3 65e1d328-70b8-4afa-bcff-c78c3a93593d b43e4922b21b996503d8ee81c882ace6 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor"} -C3L-03679.WXS.A C3L-03679 LUAD WXS tissue_normal CPT0189960006 CPT0189960006.WholeExome.RP-1303.bam 22240286023 BAM aligned CPTAC3 03c6ffdd-7dc0-466c-9a31-639ae549d998 d103c5c78c4b6f06484a373f6073e148 {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.WXS.A.hg38 C3L-03679 LUAD WXS tissue_normal CPT0189960006 0f49740e-6037-4b71-88f2-0ecbdb776eef_wxs_gdc_realn.bam 30843141334 BAM harmonized CPTAC3 318b6214-e66b-4fe7-a37c-3484a167a465 8a78e87e97775f1081dc6537b488c4bf {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03679.WXS.N C3L-03679 LUAD WXS blood_normal CPT0191100002 CPT0191100002.WholeExome.RP-1303.bam 26504435614 BAM aligned CPTAC3 001ecd19-b7a8-4365-b8dd-8eeaabc27ae8 8605a2add247d890ffd2010a3bc2fd25 {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal"} -C3L-03679.WXS.N.hg38 C3L-03679 LUAD WXS blood_normal CPT0191100002 e8f894ad-e0c8-4dd8-b72e-1336b3e1ef3b_wxs_gdc_realn.bam 36393440058 BAM harmonized CPTAC3 211cb316-2675-4b93-a3e6-7c486f2e75bc f3bf7d43512be9accd83b5d9d1833171 {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal"} -C3L-03679.WXS.T C3L-03679 LUAD WXS tumor CPT0189950006 CPT0189950006.WholeExome.RP-1303.bam 21587811074 BAM aligned CPTAC3 3110af9c-946b-457f-bc3a-42d7986ab8c9 9f808a0b3f40ec58dc475528d01689c8 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor"} -C3L-03679.WXS.T.hg38 C3L-03679 LUAD WXS tumor CPT0189950006 0846a033-ae31-467a-a838-707bbc3f2d8d_wxs_gdc_realn.bam 29832162351 BAM harmonized CPTAC3 30172257-31a1-42c1-bb99-f1c5bb98faef 423bff226656c1a8b4e65a7a0a852544 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor"} -C3L-03681.MethArray.Green.T C3L-03681 GBM Methylation_Array tumor CPT0221180005 203219760065_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 31e41c1f-3159-4899-b9e8-fe741baea2d0 9c995e7750a75aca069e2fd0d57eec62 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor"} -C3L-03681.MethArray.Red.T C3L-03681 GBM Methylation_Array tumor CPT0221180005 203219760065_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 2cc36bee-f284-4a71-ad8b-559ee83c3b8f 0d27d0e753e8359171827e9c0b36a371 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor"} -C3L-03681.miRNA-Seq.S32_L008_R1.T C3L-03681 GBM miRNA-Seq tumor CPT0221180009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L008_R1_001.unaln.bam 153422312 BAM S32_L008_R1 unaligned CPTAC3 e362d28e-75eb-48cc-8e47-16e75f3793a4 f25bf4d77b5797bd3cc312d58a96a04b {"aliquot_tag": "ALQ_50935b42", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03681.miRNA-Seq.T.hg38 C3L-03681 GBM miRNA-Seq tumor CPT0221180009 49f12657-2d1f-4314-995d-9bc42c8709cd_mirnaseq_gdc_realn.bam 174822611 BAM harmonized CPTAC3 44b2ce58-8a2e-4cd0-a71f-c6092a9864c2 f6c62664f53a560a53dd9f2868c3f815 {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor"} -C3L-03681.RNA-Seq.chimeric.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.chimeric.gdc_realn.bam 36219612 BAM chimeric harmonized CPTAC3 041c5ad0-2f26-4f5a-83e6-ba64c9ae2529 344d3ad3bde878d5daf1dea75a80652b {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor"} -C3L-03681.RNA-Seq.genomic.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.genomic.gdc_realn.bam 9434379641 BAM genomic harmonized CPTAC3 3393929d-6c16-41fe-a717-f8b06a576b1f 8450ba3314889354ea6c380d3a588b98 {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor"} -C3L-03681.RNA-Seq.S31_L008_R1.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R1_001.fastq.gz 4328253999 FASTQ S31_L008_R1 unaligned CPTAC3 2962ecc7-2fe8-4e9e-89d3-b617340d0432 8ef39799b7b277441cbe7503c4dccec9 {"aliquot_tag": "ALQ_50935b42", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03681.RNA-Seq.S31_L008_R2.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R2_001.fastq.gz 4631403009 FASTQ S31_L008_R2 unaligned CPTAC3 9bb1f2aa-64c9-4c92-b826-ee22bb21f2a0 d471d4619e40eb1f6711d8c9c8831310 {"aliquot_tag": "ALQ_50935b42", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03681.RNA-Seq.transcriptome.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.transcriptome.gdc_realn.bam 12135280133 BAM transcriptome harmonized CPTAC3 0529914f-888b-4dac-9b8a-02bb32fdd6b8 65890b93eb705d53faaab93bb1af33a8 {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor"} -C3L-03681.WGS.N C3L-03681 GBM WGS blood_normal CPT0220510002 CPT0220510002.WholeGenome.RP-1303.bam 60596705995 BAM aligned CPTAC3 08f9bd71-2fa5-41b2-88c2-5014a14fb0f9 82a919f2e2a0b44cd77ec2f202121dc6 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal"} -C3L-03681.WGS.N.hg38 C3L-03681 GBM WGS blood_normal CPT0220510002 62fc896c-d0c5-4885-b546-4b024f96b1e7_wgs_gdc_realn.bam 87428465300 BAM harmonized CPTAC3 7f3b8669-1552-4554-8f61-7471a0ba9abc 00bfd37919fd9eaf2bf8c2915679b633 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal"} -C3L-03681.WGS.T C3L-03681 GBM WGS tumor CPT0221180005 CPT0221180005.WholeGenome.RP-1303.bam 66863164893 BAM aligned CPTAC3 d8d69033-1a00-4e38-ab8f-7fd5a316ed57 7556b9b2b1e4a24aca919ee759d489c5 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor"} -C3L-03681.WGS.T.hg38 C3L-03681 GBM WGS tumor CPT0221180005 d262fa4d-cd40-4d6d-962b-0a484e6e124f_wgs_gdc_realn.bam 95992233101 BAM harmonized CPTAC3 ad4153c7-62a9-4e3a-8ed1-e381392867b3 3e56e1336b21f6126c2a65532f4731b6 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor"} -C3L-03681.WXS.N C3L-03681 GBM WXS blood_normal CPT0220510002 CPT0220510002.WholeExome.RP-1303.bam 26983951722 BAM aligned CPTAC3 7a78890a-81a5-46e2-a006-29e43a5ed46e 4427d2fc5f3e76aa5c9a78fa4eb91bd2 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal"} -C3L-03681.WXS.N.hg38 C3L-03681 GBM WXS blood_normal CPT0220510002 62fc896c-d0c5-4885-b546-4b024f96b1e7_wxs_gdc_realn.bam 36817009281 BAM harmonized CPTAC3 025cd14c-c245-4ff6-8f08-e0c88ca5c078 b6ad48c5992128228c4c2473738257e2 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal"} -C3L-03681.WXS.T C3L-03681 GBM WXS tumor CPT0221180005 CPT0221180005.WholeExome.RP-1303.bam 21830967650 BAM aligned CPTAC3 5c80218c-45da-4287-98e1-6fca91cff83c ef5e1b802aaa779953721ad75c094efa {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor"} -C3L-03681.WXS.T.hg38 C3L-03681 GBM WXS tumor CPT0221180005 d262fa4d-cd40-4d6d-962b-0a484e6e124f_wxs_gdc_realn.bam 29913291074 BAM harmonized CPTAC3 c40e15be-ab64-42be-a5f5-418dee1f7645 a49b501a3975df5d3a31faec1e452b82 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor"} -C3L-03717.MethArray.Green.T C3L-03717 LUAD Methylation_Array tumor CPT0234740006 203561620064_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b1059386-8076-41cb-803e-85b538a0ee3e c800f2a39bd8451cdb0b7259ce8ee114 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor"} -C3L-03717.MethArray.Red.T C3L-03717 LUAD Methylation_Array tumor CPT0234740006 203561620064_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 0f9b35f8-1e2e-481e-a478-df259a52bef6 4021ea8442e982e3ed78dbca08e55ab9 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor"} -C3L-03717.miRNA-Seq.A.hg38 C3L-03717 LUAD miRNA-Seq tissue_normal CPT0234750006 bfa36740-351a-483f-a47e-c44d04933ae6_mirnaseq_gdc_realn.bam 227561904 BAM harmonized CPTAC3 fcbf6387-1ae8-4178-b4e3-d6a7150223d3 a424e63bf85679cb80002575417295d6 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03717.miRNA-Seq.S151_L007_R1.T C3L-03717 LUAD miRNA-Seq tumor CPT0234740009 190828_UNC32-K00270_0200_BH7GVJBBXY_CACCGG_S151_L007_R1_001.unaln.bam 222359039 BAM S151_L007_R1 unaligned CPTAC3 807a2b85-afe9-46b6-9071-8e57bca27cfe 5a17481d1038440c2c5214a1bbc3c7cf {"aliquot_tag": "ALQ_dda87a67", "sample": "S151", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03717.miRNA-Seq.S7_L006_R1.A C3L-03717 LUAD miRNA-Seq tissue_normal CPT0234750006 190712_UNC32-K00270_0192_BH7HL3BBXY_CACGAT_S7_L006_R1_001.unaln.bam 200595873 BAM S7_L006_R1 unaligned CPTAC3 0cad8a8b-6205-47f6-bf4e-00d079beff5f 0000b65d6a2eb8573ea727dc04559040 {"aliquot_tag": "ALQ_70774e46", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03717.miRNA-Seq.T.hg38 C3L-03717 LUAD miRNA-Seq tumor CPT0234740009 0e0c5bef-a926-410f-afc2-bc09e4fce6bd_mirnaseq_gdc_realn.bam 247676747 BAM harmonized CPTAC3 d3ba4e47-3cf8-4bc6-a7cb-6c7408241293 e1b2d86452a3fd47d89f130a8f04ccf6 {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor"} -C3L-03717.RNA-Seq.chimeric.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.chimeric.gdc_realn.bam 40498546 BAM chimeric harmonized CPTAC3 1b60da2d-a9a3-4b37-a1ac-2d435c88fbad f4695cb8bae70a3a9cc02c69893aea65 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03717.RNA-Seq.chimeric.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.chimeric.gdc_realn.bam 46691961 BAM chimeric harmonized CPTAC3 e21e4f14-3718-4480-a6b3-94f6f49bf582 f27418f38de2ff4d243947ffd9ba9469 {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor"} -C3L-03717.RNA-Seq.genomic.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.genomic.gdc_realn.bam 9508999063 BAM genomic harmonized CPTAC3 535ac5cd-f7c2-4c5a-b1ac-0b6786948f64 61f0684b1cedc8c50c543c1d4af96d51 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03717.RNA-Seq.genomic.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.genomic.gdc_realn.bam 12097666934 BAM genomic harmonized CPTAC3 55d51372-a0cb-4829-b4ef-ca341fea5f1a 5ba2d265f3417338fc14e683c1c7246c {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor"} -C3L-03717.RNA-Seq.S21_L006_R1.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R1_001.fastq.gz 4558899664 FASTQ S21_L006_R1 unaligned CPTAC3 b09d3d82-e1d8-41d5-8a0d-803946d44c18 9e5886f9909876a30c67ca206a2c7cd5 {"aliquot_tag": "ALQ_dda87a67", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03717.RNA-Seq.S21_L006_R2.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R2_001.fastq.gz 4907137139 FASTQ S21_L006_R2 unaligned CPTAC3 569db2ac-ba53-42a2-9902-f80c82fddf1d f715496ec2aa4e4690714f3c950722a0 {"aliquot_tag": "ALQ_dda87a67", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03717.RNA-Seq.S24_L006_R1.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R1_001.fastq.gz 4011200395 FASTQ S24_L006_R1 unaligned CPTAC3 65e9b9a7-b693-46c7-8ba1-3f71ca129fb5 5d663364f1bc171057088835e1cd9082 {"aliquot_tag": "ALQ_70774e46", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03717.RNA-Seq.S24_L006_R2.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R2_001.fastq.gz 4121879476 FASTQ S24_L006_R2 unaligned CPTAC3 5b1346f1-9e3f-4f66-b4fc-5febd7a88009 65ed4dcb92f1f7c6f846efb3c0bea463 {"aliquot_tag": "ALQ_70774e46", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03717.RNA-Seq.transcriptome.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.transcriptome.gdc_realn.bam 7823869315 BAM transcriptome harmonized CPTAC3 acbd8d5a-36e5-424d-bc8a-45694f001f69 9ba5175759bb6a99ee4b9423b1556f14 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03717.RNA-Seq.transcriptome.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.transcriptome.gdc_realn.bam 10253833436 BAM transcriptome harmonized CPTAC3 a3ad906b-495d-4178-8012-9426c5b1539f 8491a6465b856181a374dedb3e77c79e {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor"} -C3L-03717.WGS.N C3L-03717 LUAD WGS blood_normal CPT0235690002 CPT0235690002.WholeGenome.RP-1303.bam 73774164554 BAM aligned CPTAC3 db60d572-1db1-448f-8225-bb9b4c19c80e 3a83f4e821f299349956a3f7361f0130 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03717.WGS.N.hg38 C3L-03717 LUAD WGS blood_normal CPT0235690002 08bcc004-30bd-4be8-b277-ac5bb83e4f79_wgs_gdc_realn.bam 107806932916 BAM harmonized CPTAC3 4e6a6c06-5fbb-487a-b575-7ce4912d73cc a4338be02fffe63766511bcaa49b8fb7 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03717.WGS.T C3L-03717 LUAD WGS tumor CPT0234740006 CPT0234740006.WholeGenome.RP-1303.bam 63967175863 BAM aligned CPTAC3 4ace2d37-2469-4a84-8bec-ae151accd9af 7b539ff70835709d9fd2470acb017b89 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor"} -C3L-03717.WGS.T.hg38 C3L-03717 LUAD WGS tumor CPT0234740006 a51447de-1b8d-4b55-95bf-5e6e07fdf546_wgs_gdc_realn.bam 94646253598 BAM harmonized CPTAC3 acaa48ed-5b19-4353-9f59-d8516f155241 972420a340a800e98caf0a40345efc8a {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor"} -C3L-03717.WXS.N C3L-03717 LUAD WXS blood_normal CPT0235690002 CPT0235690002.WholeExome.RP-1303.bam 28314233035 BAM aligned CPTAC3 01f81cfe-10da-4127-b146-1cf430a6c3e3 b5958f47ec8b70cb185864bdef70ab71 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03717.WXS.N.hg38 C3L-03717 LUAD WXS blood_normal CPT0235690002 08bcc004-30bd-4be8-b277-ac5bb83e4f79_wxs_gdc_realn.bam 39085954742 BAM harmonized CPTAC3 7088bb35-9895-4107-a3cb-f947c133007c 7c03c24fa0c27ddbea77c298a1fe5791 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03717.WXS.T C3L-03717 LUAD WXS tumor CPT0234740006 CPT0234740006.WholeExome.RP-1303.bam 24005418441 BAM aligned CPTAC3 8430cba7-4f4a-4916-b66c-337d1aaba420 2a2ef94a7ec8305212a693b4bf4d2d31 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor"} -C3L-03717.WXS.T.hg38 C3L-03717 LUAD WXS tumor CPT0234740006 a51447de-1b8d-4b55-95bf-5e6e07fdf546_wxs_gdc_realn.bam 33180027700 BAM harmonized CPTAC3 429e7f31-adc8-444a-abf0-2f2ffcc0c184 15550fae89f82d0b6950e241f0e7a74b {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor"} -C3L-03721.MethArray.Green.T C3L-03721 LUAD Methylation_Array tumor CPT0234700006 203561450014_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 72701e20-52c0-440f-b504-f0eac5514dce b78502e41b757681d45cc27d841524bc {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor"} -C3L-03721.MethArray.Red.T C3L-03721 LUAD Methylation_Array tumor CPT0234700006 203561450014_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 d840dace-3adb-4db6-a902-06ed645462b5 3847029331c3eb93e62694644152d945 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor"} -C3L-03721.miRNA-Seq.A.hg38 C3L-03721 LUAD miRNA-Seq tissue_normal CPT0234710006 13343134-1598-4484-a00d-c0cea64b5155_mirnaseq_gdc_realn.bam 284110343 BAM harmonized CPTAC3 1241f439-348f-4c90-82f2-4f173e77c6cc 0d4f579aee47c0db69cc67242601526a {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03721.miRNA-Seq.S4_L006_R1.T C3L-03721 LUAD miRNA-Seq tumor CPT0234700009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAAAAG_S4_L006_R1_001.unaln.bam 155487417 BAM S4_L006_R1 unaligned CPTAC3 f5ab7bd5-d1cc-4326-a51b-b204d3d2de9c 696bc43531d488ac468bb6d904772f0f {"aliquot_tag": "ALQ_2828dca7", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03721.miRNA-Seq.S5_L006_R1.A C3L-03721 LUAD miRNA-Seq tissue_normal CPT0234710006 190712_UNC32-K00270_0192_BH7HL3BBXY_CAACTA_S5_L006_R1_001.unaln.bam 253312676 BAM S5_L006_R1 unaligned CPTAC3 263d313c-383b-4b11-8858-1dcfc6b544cb c050fe3a78255e83aeb78d0dceeaa5cd {"aliquot_tag": "ALQ_85f7e886", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03721.miRNA-Seq.T.hg38 C3L-03721 LUAD miRNA-Seq tumor CPT0234700009 087e32c7-c64a-47cf-a410-d222959c35fd_mirnaseq_gdc_realn.bam 169418204 BAM harmonized CPTAC3 555154f3-38c0-43c7-b989-f5994923d16b dcb4320348a8f27542ecb75bce5cd961 {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor"} -C3L-03721.RNA-Seq.chimeric.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.chimeric.gdc_realn.bam 158639877 BAM chimeric harmonized CPTAC3 0422ab86-3f29-4f20-90ee-a8cfafa9c589 a237a8b10fc735ead7c17e615df3d413 {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03721.RNA-Seq.chimeric.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.chimeric.gdc_realn.bam 44175288 BAM chimeric harmonized CPTAC3 a6b66353-a0ad-413a-8361-43d6d36bfb4d b8b02ffaee1a47eb8dd14e531e47feef {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor"} -C3L-03721.RNA-Seq.genomic.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.genomic.gdc_realn.bam 9553535842 BAM genomic harmonized CPTAC3 de3c6dbd-580b-42db-9aa6-7e8565de37b4 14ee906ab41851d11e42b0f5110db9fe {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03721.RNA-Seq.genomic.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.genomic.gdc_realn.bam 10903759860 BAM genomic harmonized CPTAC3 f30b2214-044f-44b7-9b8f-b9a2ac765411 3b1520a0399e6690fb4a00a58d505200 {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor"} -C3L-03721.RNA-Seq.S22_L006_R1.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R1_001.fastq.gz 3896456947 FASTQ S22_L006_R1 unaligned CPTAC3 fe53295e-126a-4062-952c-c3e4214108ba 8596ad1327aba58834fbae67d22e6e89 {"aliquot_tag": "ALQ_85f7e886", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03721.RNA-Seq.S22_L006_R2.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R2_001.fastq.gz 4192643077 FASTQ S22_L006_R2 unaligned CPTAC3 2c975488-ea18-4118-87bf-0d41cac751b6 6d2be3760303dce6d6e6f31844641fba {"aliquot_tag": "ALQ_85f7e886", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03721.RNA-Seq.S23_L006_R1.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R1_001.fastq.gz 4501554460 FASTQ S23_L006_R1 unaligned CPTAC3 bdf57d83-d1be-45e2-ae74-6981c82ad434 34a227a6c776bf96dc1eff4726da933d {"aliquot_tag": "ALQ_2828dca7", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03721.RNA-Seq.S23_L006_R2.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R2_001.fastq.gz 4876422066 FASTQ S23_L006_R2 unaligned CPTAC3 3c124874-61f3-4882-867c-e4929f37efa4 84cd01930acd943cca048cd7fcd07af7 {"aliquot_tag": "ALQ_2828dca7", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03721.RNA-Seq.transcriptome.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.transcriptome.gdc_realn.bam 8076242832 BAM transcriptome harmonized CPTAC3 7e068d1a-0387-4059-88de-36c07f8767e9 14737d97f174bfab25a9c7f8995b88ff {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03721.RNA-Seq.transcriptome.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.transcriptome.gdc_realn.bam 10176546077 BAM transcriptome harmonized CPTAC3 57b4e654-14b6-4283-b09d-6bae3e937005 93fe109bb22046c62f8c18f7dcf7489c {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor"} -C3L-03721.WGS.N C3L-03721 LUAD WGS blood_normal CPT0235670002 CPT0235670002.WholeGenome.RP-1303.bam 66978454146 BAM aligned CPTAC3 3085ea60-6d0c-4312-98d9-4ef1aa8e0393 7a30150bc1a9eb15ee1c0a3c60caaa5f {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03721.WGS.N.hg38 C3L-03721 LUAD WGS blood_normal CPT0235670002 507112b8-b843-43a3-9e73-f3fdfb6bf2c9_wgs_gdc_realn.bam 97964658206 BAM harmonized CPTAC3 6bec62d0-ab99-4187-b854-4b061588c07e 9c3b8bcd2e4a47e30fd35a8e10cd0993 {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03721.WGS.T C3L-03721 LUAD WGS tumor CPT0234700006 CPT0234700006.WholeGenome.RP-1303.bam 83695007049 BAM aligned CPTAC3 c019e549-2eca-4bf9-9370-5ce054fc4fe6 a1d17e2efcca41d66f6a07b0a65cb311 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor"} -C3L-03721.WGS.T.hg38 C3L-03721 LUAD WGS tumor CPT0234700006 53b0dcc1-dd63-4184-8714-07fac13bde7d_wgs_gdc_realn.bam 122060227501 BAM harmonized CPTAC3 e46f55e6-ada8-4b0d-9237-697b76179e01 f862a403f7a077c63502514e7a51a34d {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor"} -C3L-03721.WXS.N C3L-03721 LUAD WXS blood_normal CPT0235670002 CPT0235670002.WholeExome.RP-1303.bam 27331578309 BAM aligned CPTAC3 026685f6-7fb5-4326-a7d3-89d782012984 650820d44dc6bf98edf60edad4c1a5b1 {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03721.WXS.N.hg38 C3L-03721 LUAD WXS blood_normal CPT0235670002 507112b8-b843-43a3-9e73-f3fdfb6bf2c9_wxs_gdc_realn.bam 37128456007 BAM harmonized CPTAC3 45f3b611-b881-4d78-9aea-316c45564689 bfe71d2fc0136de2ce7221912de089c8 {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03721.WXS.T C3L-03721 LUAD WXS tumor CPT0234700006 CPT0234700006.WholeExome.RP-1303.bam 25338565064 BAM aligned CPTAC3 790f25e4-d861-4a69-a6ea-6f7bc5291cd0 d7fe0f475fd2e0c77220f932f7757781 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor"} -C3L-03721.WXS.T.hg38 C3L-03721 LUAD WXS tumor CPT0234700006 53b0dcc1-dd63-4184-8714-07fac13bde7d_wxs_gdc_realn.bam 35897077816 BAM harmonized CPTAC3 acd9819b-c9b2-4d76-a6dc-8ad90eb91b31 2f305503f00fe79f4015f419c422bcc9 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor"} -C3L-03726.MethArray.Green.A C3L-03726 LUAD Methylation_Array tissue_normal CPT0225640009 203561450027_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 49582b0a-289d-4749-8be7-0f91773d0af5 d81eaaabc18dedb8924639722d0c3737 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.MethArray.Green.T C3L-03726 LUAD Methylation_Array tumor CPT0225570006 203561620162_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ba968284-87d1-4548-8a40-a993f5919d1f 18f5f2e48cded6117b08baa692820c44 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor"} -C3L-03726.MethArray.Red.A C3L-03726 LUAD Methylation_Array tissue_normal CPT0225640009 203561450027_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 b3744aca-47ad-45a5-9f0c-d895149362b9 4adc23897ff6839884e17a5281de6077 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.MethArray.Red.T C3L-03726 LUAD Methylation_Array tumor CPT0225570006 203561620162_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 7975ea0b-b515-4f3e-aec4-8fcd0d49f9c4 848a8ef2139ab7d4d7188feafce37984 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor"} -C3L-03726.miRNA-Seq.A.hg38 C3L-03726 LUAD miRNA-Seq tissue_normal CPT0225640006 50be575c-cd4d-4f31-92ba-bf9b9b4536be_mirnaseq_gdc_realn.bam 230329871 BAM harmonized CPTAC3 a4c04c5a-f1af-4604-aec5-e6f633bea13c 91ca82476bad7f32adfcf1baa9bc8800 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.miRNA-Seq.S16_L007_R1.A C3L-03726 LUAD miRNA-Seq tissue_normal CPT0225640006 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGGCC_S16_L007_R1_001.unaln.bam 204331196 BAM S16_L007_R1 unaligned CPTAC3 16e1328a-150c-4480-ba34-a9aecf1629d7 4d355a78756c1d694d129220864df24c {"aliquot_tag": "ALQ_ec96bf79", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.miRNA-Seq.S28_L004_R1.T C3L-03726 LUAD miRNA-Seq tumor CPT0225570009 190722_UNC31-K00269_0234_AH7VGTBBXY_CATGGC_S28_L004_R1_001.unaln.bam 221489169 BAM S28_L004_R1 unaligned CPTAC3 f8a2289f-5d7d-4996-97ff-58d89c1c6466 d0bd3cc23c8b8f6ec5d340c947635a79 {"aliquot_tag": "ALQ_bd1daa96", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03726.miRNA-Seq.T.hg38 C3L-03726 LUAD miRNA-Seq tumor CPT0225570009 fa427b82-a49a-4447-99b8-124ec0a3e387_mirnaseq_gdc_realn.bam 243138284 BAM harmonized CPTAC3 2794805c-e5ab-4d06-bb77-cd79d4c29c9e 9ba5a2eca9aaa81d8594eb9623e3765b {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor"} -C3L-03726.RNA-Seq.chimeric.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.chimeric.gdc_realn.bam 26303613 BAM chimeric harmonized CPTAC3 4d517290-89eb-4a9b-8b6f-38d093140ff6 97e8d70c3ed5cc01bbbb4781ebf77120 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.RNA-Seq.chimeric.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.chimeric.gdc_realn.bam 35246912 BAM chimeric harmonized CPTAC3 a0d47a31-4523-46f7-aa31-a9b0185a66d9 cee7202cbef8c074c7e1280f7ce5f7a9 {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor"} -C3L-03726.RNA-Seq.genomic.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.genomic.gdc_realn.bam 10079330980 BAM genomic harmonized CPTAC3 ce473a20-5270-428f-bf56-56c4f634e5aa 63de9e33ffc4eec25b38be1d60910334 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.RNA-Seq.genomic.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.genomic.gdc_realn.bam 11657199152 BAM genomic harmonized CPTAC3 e5f43cde-88a4-4dcd-b0c3-cb603325c22f a074ed509a0a8a2321c80ee15a5fb1e4 {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor"} -C3L-03726.RNA-Seq.S22_L006_R1.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R1_001.fastq.gz 4076005533 FASTQ S22_L006_R1 unaligned CPTAC3 7416b7eb-d016-4d5f-bb8c-5f6522fab3c6 eb7db91665cb0e5ab5c957acd57849f3 {"aliquot_tag": "ALQ_bd1daa96", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03726.RNA-Seq.S22_L006_R2.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R2_001.fastq.gz 4643808466 FASTQ S22_L006_R2 unaligned CPTAC3 4e181e91-e18e-4087-b243-0aa9d9cc1f26 8a4b6d916773987af70685d82458c90c {"aliquot_tag": "ALQ_bd1daa96", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03726.RNA-Seq.S26_L007_R1.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R1_001.fastq.gz 3885824144 FASTQ S26_L007_R1 unaligned CPTAC3 b70b30a2-fe04-4db8-9114-a93e8917d568 aa1f3e21ef25c8c5fbf79d05c4127bed {"aliquot_tag": "ALQ_ec96bf79", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.RNA-Seq.S26_L007_R2.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R2_001.fastq.gz 4221526815 FASTQ S26_L007_R2 unaligned CPTAC3 9b248614-6222-40fe-8be5-c21de1b3ee60 f294d29ce31e71531e551431967ef727 {"aliquot_tag": "ALQ_ec96bf79", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.RNA-Seq.transcriptome.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.transcriptome.gdc_realn.bam 8902048725 BAM transcriptome harmonized CPTAC3 256492ef-764c-411f-b213-2f274b621227 730e6835ef53cb2669bf6170f517de23 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.RNA-Seq.transcriptome.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.transcriptome.gdc_realn.bam 9264735441 BAM transcriptome harmonized CPTAC3 a525277e-a09f-4727-827c-fcbecefd2792 a6f4f3d29b5260b3fd74b2349146d7c7 {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor"} -C3L-03726.WGS.N C3L-03726 LUAD WGS blood_normal CPT0226060002 CPT0226060002.WholeGenome.RP-1303.bam 71035178677 BAM aligned CPTAC3 d808ccbc-f339-43de-8573-0b8acfbc9b79 69d2908d5f5cd3a306330bd172515032 {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal"} -C3L-03726.WGS.N.hg38 C3L-03726 LUAD WGS blood_normal CPT0226060002 126101fc-f484-4fc1-832b-cebdb98357f9_wgs_gdc_realn.bam 103512559665 BAM harmonized CPTAC3 76ff4681-be57-4838-b588-558b30afda6d ce26a3218ac2e877eb97d0bfb0429fbc {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal"} -C3L-03726.WGS.T C3L-03726 LUAD WGS tumor CPT0225570006 CPT0225570006.WholeGenome.RP-1303.bam 67929053511 BAM aligned CPTAC3 a55ecf95-90bd-4f4b-8f83-0956de8bbb5d 1b5c5e390bd5b2e0b32705701c0a3107 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor"} -C3L-03726.WGS.T.hg38 C3L-03726 LUAD WGS tumor CPT0225570006 441c63b4-af8e-4c0b-ad8a-1712eb84eec1_wgs_gdc_realn.bam 100035866501 BAM harmonized CPTAC3 5aa9b84e-d899-4381-a366-f1171dff0c2f 19db9b8e2d6247c54b9e83d2039b4860 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor"} -C3L-03726.WXS.A C3L-03726 LUAD WXS tissue_normal CPT0225640009 CPT0225640009.WholeExome.RP-1303.bam 19596213761 BAM aligned CPTAC3 5a32e56b-880a-4d65-8041-fcd0ce32728f e2c606c0b1453a7799cb8b293c8a9318 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.WXS.A.hg38 C3L-03726 LUAD WXS tissue_normal CPT0225640009 2cccc455-3ab7-463f-8c84-ea81ead3d2df_wxs_gdc_realn.bam 27051494580 BAM harmonized CPTAC3 17e55aaf-94df-4118-ad7b-e27435baabc7 1ebea0d070047428e0faa25d09f97860 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03726.WXS.N C3L-03726 LUAD WXS blood_normal CPT0226060002 CPT0226060002.WholeExome.RP-1303.bam 25177654123 BAM aligned CPTAC3 00b34ad4-96b9-45ab-86b5-7125b53fc106 5bae2c87c7a06fb4c08a810a06c1ce6f {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal"} -C3L-03726.WXS.N.hg38 C3L-03726 LUAD WXS blood_normal CPT0226060002 126101fc-f484-4fc1-832b-cebdb98357f9_wxs_gdc_realn.bam 34699934616 BAM harmonized CPTAC3 caee2926-7794-4b90-986d-74d76d8e8ef5 134855e158ad291fb34d65660c651070 {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal"} -C3L-03726.WXS.T C3L-03726 LUAD WXS tumor CPT0225570006 CPT0225570006.WholeExome.RP-1303.bam 21961009776 BAM aligned CPTAC3 314ba397-b607-4ecb-9475-bb6df9cef592 688ac9e179f7ca2428b0fbaa7d15a0d6 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor"} -C3L-03726.WXS.T.hg38 C3L-03726 LUAD WXS tumor CPT0225570006 441c63b4-af8e-4c0b-ad8a-1712eb84eec1_wxs_gdc_realn.bam 30349419054 BAM harmonized CPTAC3 027900d6-699f-42a8-8d2f-46738a5dfe20 d062f88bfc80a012031192306622156e {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor"} -C3L-03727.MethArray.Green.T C3L-03727 GBM Methylation_Array tumor CPT0225730006 203220070156_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e7c6d52c-4b51-4138-a8c8-178fa1af7833 fc8ab0ec2b8140e3677c296cefb16b9f {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor"} -C3L-03727.MethArray.Red.T C3L-03727 GBM Methylation_Array tumor CPT0225730006 203220070156_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 7abd3627-17b6-44aa-a411-a4274aab3417 9d7b725582f1ab08f4445cb40b192554 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor"} -C3L-03727.miRNA-Seq.S34_L002_R1.T C3L-03727 GBM miRNA-Seq tumor CPT0225730009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGTCA_S34_L002_R1_001.unaln.bam 227966354 BAM S34_L002_R1 unaligned CPTAC3 6d10aabf-ba4a-46cd-8331-4e753b3b0a02 a10238c291f332f2e688bcea49cb841b {"aliquot_tag": "ALQ_555ad5d", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03727.miRNA-Seq.T.hg38 C3L-03727 GBM miRNA-Seq tumor CPT0225730009 7404ef25-0fe7-454e-9b8e-c633ba462c9a_mirnaseq_gdc_realn.bam 252948167 BAM harmonized CPTAC3 9b428aa7-ad5b-442e-b156-83c607837d07 cdde50d3675265969a802457c4d01a01 {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor"} -C3L-03727.RNA-Seq.chimeric.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.chimeric.gdc_realn.bam 82984573 BAM chimeric harmonized CPTAC3 94460853-32ac-4364-b891-c9c4eb46ddfb 03869603160e1ee79e6358ca8058ea47 {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor"} -C3L-03727.RNA-Seq.genomic.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.genomic.gdc_realn.bam 9003308770 BAM genomic harmonized CPTAC3 c494ec13-2e4f-4696-a24c-f6b33aaa0637 dd9c12a88ccfd06dd0000c2ff0209fca {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor"} -C3L-03727.RNA-Seq.S20_L006_R1.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R1_001.fastq.gz 4340578448 FASTQ S20_L006_R1 unaligned CPTAC3 b526132b-252b-4f64-a2ca-38cc2054e315 4df09db66023d0c55395f0f81b721a9d {"aliquot_tag": "ALQ_555ad5d", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03727.RNA-Seq.S20_L006_R2.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R2_001.fastq.gz 4701005765 FASTQ S20_L006_R2 unaligned CPTAC3 7f9a8462-d332-440b-829b-cb89534d53ac 827b7ba71c3ceb8b09b5abb936d43f79 {"aliquot_tag": "ALQ_555ad5d", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03727.RNA-Seq.transcriptome.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.transcriptome.gdc_realn.bam 11099928268 BAM transcriptome harmonized CPTAC3 3bb03e98-aa2b-4449-91cc-f70f79b93a31 bbf4d381af2ec4b41cf6892cdf7eaa58 {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor"} -C3L-03727.WGS.N C3L-03727 GBM WGS blood_normal CPT0226070002 CPT0226070002.WholeGenome.RP-1303.bam 57874549766 BAM aligned CPTAC3 dabeaec9-1bd1-438c-96d8-4563576a1313 13184df7e9d6bebad213634f6684a0ec {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal"} -C3L-03727.WGS.N.hg38 C3L-03727 GBM WGS blood_normal CPT0226070002 c9645e62-b3e4-4624-90e1-dfb6cec6a2e1_wgs_gdc_realn.bam 83183578779 BAM harmonized CPTAC3 7247fffc-8e61-4aaf-9730-d778464a2102 25ba974c7dee61f760bcef752a72c9dd {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal"} -C3L-03727.WGS.T C3L-03727 GBM WGS tumor CPT0225730006 CPT0225730006.WholeGenome.RP-1303.bam 60652599834 BAM aligned CPTAC3 68e0af99-c50e-4e2a-a646-41cbbd818126 6a7b2de16b1563b178ea6b8157eaae19 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor"} -C3L-03727.WGS.T.hg38 C3L-03727 GBM WGS tumor CPT0225730006 af5e5eeb-1d07-479b-902c-a8c807108148_wgs_gdc_realn.bam 88839794751 BAM harmonized CPTAC3 fc8a6281-297a-47a7-a5a5-9ac5562091f8 8c669d63be79b10d16dd8e68af196f7f {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor"} -C3L-03727.WXS.N C3L-03727 GBM WXS blood_normal CPT0226070002 CPT0226070002.WholeExome.RP-1303.bam 25440364596 BAM aligned CPTAC3 ced2166a-2169-4cce-8d33-65767036ca35 28b684d1ac4c7e8120cd81a5c87e4167 {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal"} -C3L-03727.WXS.N.hg38 C3L-03727 GBM WXS blood_normal CPT0226070002 c9645e62-b3e4-4624-90e1-dfb6cec6a2e1_wxs_gdc_realn.bam 35442799838 BAM harmonized CPTAC3 3783f164-e889-434f-ace0-a02ab7f52081 a1a493adf28b1a473effde6dee23a086 {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal"} -C3L-03727.WXS.T C3L-03727 GBM WXS tumor CPT0225730006 CPT0225730006.WholeExome.RP-1303.bam 21777053944 BAM aligned CPTAC3 914ba8fe-bd54-4251-8ae5-6cfbc2dcfe39 ff727835c99368acf674861ef296d9b8 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor"} -C3L-03727.WXS.T.hg38 C3L-03727 GBM WXS tumor CPT0225730006 af5e5eeb-1d07-479b-902c-a8c807108148_wxs_gdc_realn.bam 29882936385 BAM harmonized CPTAC3 28946ab5-9744-4f74-b09c-17024f1c530f 33d68591448ce6142f3537477fc57a16 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor"} -C3L-03728.MethArray.Green.T C3L-03728 GBM Methylation_Array tumor CPT0225760006 203219650042_R07C01_Grn.idat 13676227 IDAT Green NA CPTAC3 be8578db-0659-4bff-be3e-28ad92e8263f 4cf40997be036698273cc54b26028959 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor"} -C3L-03728.MethArray.Red.T C3L-03728 GBM Methylation_Array tumor CPT0225760006 203219650042_R07C01_Red.idat 13676227 IDAT Red NA CPTAC3 50f2e9f8-72bb-481b-9731-10015ed6fbd9 732c7a08f80e164868bf1f0c38845be4 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor"} -C3L-03728.miRNA-Seq.S33_L002_R1.T C3L-03728 GBM miRNA-Seq tumor CPT0225760009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCGTCC_S33_L002_R1_001.unaln.bam 185612634 BAM S33_L002_R1 unaligned CPTAC3 c72f981f-c656-4439-8209-ea0232f27557 6d3ef8d1f31b90e555564ba2731b77dd {"aliquot_tag": "ALQ_cdb5222d", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03728.miRNA-Seq.T.hg38 C3L-03728 GBM miRNA-Seq tumor CPT0225760009 9132e3c7-f895-4a21-800c-dda668a465cd_mirnaseq_gdc_realn.bam 204370357 BAM harmonized CPTAC3 d14d95ca-a9ae-4c0b-9ca4-a184072820c0 4f6940637448b4b2707bfca3a04a74ae {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor"} -C3L-03728.RNA-Seq.chimeric.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.chimeric.gdc_realn.bam 95679507 BAM chimeric harmonized CPTAC3 91ee5330-5d98-4395-bab9-c295521069cc 370a58d3cf4acc68f6c49def90f4e18c {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor"} -C3L-03728.RNA-Seq.genomic.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.genomic.gdc_realn.bam 9078827772 BAM genomic harmonized CPTAC3 61cdb955-ccd0-4f5c-935c-d0f9994d1cb4 18b6804c31eadef92d155c7b6ad9ccfd {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor"} -C3L-03728.RNA-Seq.S22_L006_R1.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ S22_L006_R1 unaligned CPTAC3 b4baf937-60b5-42f9-a33e-1209aa16242b e1a7531d449aa9012fee9747c85cdbf2 {"aliquot_tag": "ALQ_cdb5222d", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03728.RNA-Seq.S22_L006_R2.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ S22_L006_R2 unaligned CPTAC3 1c99ba97-600a-4b1f-8896-eaa03fcb0372 b042f7e6520aad7088e5e25eedf03980 {"aliquot_tag": "ALQ_cdb5222d", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03728.RNA-Seq.transcriptome.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.transcriptome.gdc_realn.bam 9887316159 BAM transcriptome harmonized CPTAC3 311495cf-f412-47e7-ad1a-02280d820554 09d1ebfbe7337b022105a9c12127769b {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor"} -C3L-03728.WGS.N C3L-03728 GBM WGS blood_normal CPT0226080002 CPT0226080002.WholeGenome.RP-1303.bam 57921937659 BAM aligned CPTAC3 2307c4bb-6f8e-4223-96dd-2506f0c1bc72 b1710ba80321aef12ea8311840ae9c52 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03728.WGS.N.hg38 C3L-03728 GBM WGS blood_normal CPT0226080002 97ec897b-c7b9-4ccb-8bd0-caa209d71254_wgs_gdc_realn.bam 83720461591 BAM harmonized CPTAC3 a08af25b-9aed-42e8-9bb2-e32873fe5874 ec976ce17710827ddb8ed4c88d82b848 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03728.WGS.T C3L-03728 GBM WGS tumor CPT0225760006 CPT0225760006.WholeGenome.RP-1303.bam 56031768687 BAM aligned CPTAC3 42bac2f7-191c-45f7-aa29-ca3375844664 e1d15736f8c71616f1e6f31c8a2ee0a7 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor"} -C3L-03728.WGS.T.hg38 C3L-03728 GBM WGS tumor CPT0225760006 269ffccf-de74-4303-8d2f-0b737598d9f9_wgs_gdc_realn.bam 80472595369 BAM harmonized CPTAC3 85e6d6ce-fd69-4897-a631-d7ba1c5affd6 47d4d248c75d2f5d98935610371651b9 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor"} -C3L-03728.WXS.N C3L-03728 GBM WXS blood_normal CPT0226080002 CPT0226080002.WholeExome.RP-1303.bam 27682972484 BAM aligned CPTAC3 65fc79b0-c28c-4652-8d28-155eb23f10e6 e6d7ac4e44adf33999a9157a8eab1146 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03728.WXS.N.hg38 C3L-03728 GBM WXS blood_normal CPT0226080002 97ec897b-c7b9-4ccb-8bd0-caa209d71254_wxs_gdc_realn.bam 38186917525 BAM harmonized CPTAC3 c97ebe61-c87c-4ff6-9294-24d4b65d7d42 c6647cffe8f02349ab593052ef95d530 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal"} -C3L-03728.WXS.T C3L-03728 GBM WXS tumor CPT0225760006 CPT0225760006.WholeExome.RP-1303.bam 26317526083 BAM aligned CPTAC3 c2addcd8-750b-4cca-a7dc-2d575e954e2d 5709de1f26454f7bc383710e788c113d {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor"} -C3L-03728.WXS.T.hg38 C3L-03728 GBM WXS tumor CPT0225760006 269ffccf-de74-4303-8d2f-0b737598d9f9_wxs_gdc_realn.bam 35731653164 BAM harmonized CPTAC3 ed09a41d-0f97-4e69-9b66-9500b0a7381f 93df15b377b2aac359a84f06f96da6ba {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor"} -C3L-03733.MethArray.Green.T C3L-03733 GBM Methylation_Array tumor CPT0388870006 204930630107_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 25809078-a2d0-4051-be7e-4cc8acaaaf0c 92856b6deadf2cec7820538e16c64fe4 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor"} -C3L-03733.MethArray.Red.T C3L-03733 GBM Methylation_Array tumor CPT0388870006 204930630107_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 0d4726e6-9601-4df3-83a1-7c67f3320910 7df49410d21bf695e7fb42cb80f1ec24 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor"} -C3L-03733.miRNA-Seq.S30_L007_R1.T C3L-03733 GBM miRNA-Seq tumor CPT0388870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GATCAG_S30_L007_R1_001.unaln.bam 223566229 BAM S30_L007_R1 unaligned CPTAC3 10d636a4-81d8-42c4-a6b0-c6a7fd06b140 4f8c18eeb73beece79024f090ea0aa73 {"aliquot_tag": "ALQ_e6efd003", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03733.miRNA-Seq.T.hg38 C3L-03733 GBM miRNA-Seq tumor CPT0388870009 77bec3e5-595f-420f-a23b-59bffbcccf44_mirnaseq_gdc_realn.bam 246530370 BAM harmonized CPTAC3 706c4a4d-10a9-444a-9a5f-c768b944806d 51898f31e977bea81f53453df1887162 {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor"} -C3L-03733.RNA-Seq.chimeric.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.chimeric.gdc_realn.bam 266646753 BAM chimeric harmonized CPTAC3 dc0a3251-2040-4361-bb9a-4f3b78cffbc6 aeaf82ea312c7b78a22094b977e0a499 {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor"} -C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.genomic.gdc_realn.bam 8079501100 BAM genomic harmonized CPTAC3 602fb004-e784-4254-b4af-0f64915cf9fd 910f857c7b6b9aae00880ae8ddc28fca {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor"} -C3L-03733.RNA-Seq.S1_L001_R1.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ S1_L001_R1 unaligned CPTAC3 d3c8b80a-f15c-47ad-927e-96483a71a4ac 8a7625be123cf1142d9d514d3dd2f0fe {"aliquot_tag": "ALQ_e6efd003", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03733.RNA-Seq.S1_L001_R2.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ S1_L001_R2 unaligned CPTAC3 d68a3a3f-d8d9-488f-b581-3eb6bf3c545f 3417e6f248552d41697758862f7c9a80 {"aliquot_tag": "ALQ_e6efd003", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03733.RNA-Seq.transcriptome.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.transcriptome.gdc_realn.bam 9601312087 BAM transcriptome harmonized CPTAC3 375fc4be-2a70-4779-a225-daec566e15d0 928df5dbec6cf5ef5dad8d3ecc38d402 {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor"} -C3L-03733.WGS.N C3L-03733 GBM WGS blood_normal CPT0388900002 CPT0388900002.WholeGenome.RP-2158.bam 25383296813 BAM aligned CPTAC3 cd628747-fd76-4da6-97cb-6e20282d4b6a f60aa2f2e02306c83488611b2cf877ce {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03733.WGS.N.hg38 C3L-03733 GBM WGS blood_normal CPT0388900002 b5c33706-5e86-42f3-9fd2-ab09c7614d05_wgs_gdc_realn.bam 73835643752 BAM harmonized CPTAC3 4b5cd4a1-6a8d-4d03-a714-0d819779e047 d5950930c8028fea2b5fbf987837f528 {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03733.WGS.T C3L-03733 GBM WGS tumor CPT0388870006 CPT0388870006.WholeGenome.RP-2158.bam 21210221177 BAM aligned CPTAC3 085c2ec3-e073-4e33-b105-b7a31acfd571 930a132c5a56fb79f5a2efd0e2be2ff5 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor"} -C3L-03733.WGS.T.hg38 C3L-03733 GBM WGS tumor CPT0388870006 bfb2401e-4a92-4242-92bb-d01ecb08d14d_wgs_gdc_realn.bam 61788693098 BAM harmonized CPTAC3 3670c996-27b9-48ba-ba81-9f8129b1d722 69ae73e3bc358adab112f38b8db67d93 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor"} -C3L-03733.WXS.N C3L-03733 GBM WXS blood_normal CPT0388900002 CPT0388900002.WholeExome.RP-1303.bam 25281066656 BAM aligned CPTAC3 899e62b6-5d45-429c-b1a8-1de6e24057c5 5cdca3407113895fc108311062353b93 {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03733.WXS.N.hg38 C3L-03733 GBM WXS blood_normal CPT0388900002 b5c33706-5e86-42f3-9fd2-ab09c7614d05_wxs_gdc_realn.bam 35376963378 BAM harmonized CPTAC3 25d1bdb6-0d99-4a7d-92b6-85eef9854759 de933d289c3c3f280465191b5f49afe9 {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03733.WXS.T C3L-03733 GBM WXS tumor CPT0388870006 CPT0388870006.WholeExome.RP-1303.bam 26953591550 BAM aligned CPTAC3 9f09db89-5fb9-43ab-9858-a6958bfff22b 6536aa66cea208db82f3004be2b63cf7 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor"} -C3L-03733.WXS.T.hg38 C3L-03733 GBM WXS tumor CPT0388870006 bfb2401e-4a92-4242-92bb-d01ecb08d14d_wxs_gdc_realn.bam 36743064043 BAM harmonized CPTAC3 33ac154f-1767-4f9b-8075-a12172189894 2c182698dc50404bc3ddf84f47b98952 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor"} -C3L-03735.MethArray.Green.T C3L-03735 GBM Methylation_Array tumor CPT0264120006 204372030139_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1f3898f2-8567-4571-9c7e-6701ab7e09b2 e4ea6995a9d4330685d9c6c88da21b46 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor"} -C3L-03735.MethArray.Red.T C3L-03735 GBM Methylation_Array tumor CPT0264120006 204372030139_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 97fac48f-ce44-476b-b272-67f76253e6f8 b220788c886cc9e8318244659e95dda1 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor"} -C3L-03735.miRNA-Seq.S5_L001_R1.T C3L-03735 GBM miRNA-Seq tumor CPT0264120009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAACTA_S5_L001_R1_001.unaln.bam 263228813 BAM S5_L001_R1 unaligned CPTAC3 fa531fa4-4220-40f6-8a5d-1241957f540c c0d9e90d92febf9ea2a53179e4419985 {"aliquot_tag": "ALQ_cc5162be", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03735.miRNA-Seq.T.hg38 C3L-03735 GBM miRNA-Seq tumor CPT0264120009 ccc75cf4-aaac-47ab-8dd1-9fb1b8e8c38a_mirnaseq_gdc_realn.bam 290946160 BAM harmonized CPTAC3 bcadc513-5cc4-4fcd-a3fc-4cd9f26e1265 ce6708b82f2dc00ec8553b99617812db {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor"} -C3L-03735.RNA-Seq.chimeric.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.chimeric.gdc_realn.bam 37307265 BAM chimeric harmonized CPTAC3 5131b726-cc52-4015-aea9-b521dd383c3f a359a552a2e0d8baabab651b41d0b3ca {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor"} -C3L-03735.RNA-Seq.genomic.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.genomic.gdc_realn.bam 8408398102 BAM genomic harmonized CPTAC3 60b2a739-6f77-4d4a-925a-4b6d1116b180 cf7fb7d922cef32f9e99e5892725940b {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor"} -C3L-03735.RNA-Seq.S54_L005_R1.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ S54_L005_R1 unaligned CPTAC3 fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 7a81966aa194b821b5c8a5374a282c11 {"aliquot_tag": "ALQ_cc5162be", "sample": "S54", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03735.RNA-Seq.S54_L005_R2.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ S54_L005_R2 unaligned CPTAC3 0552d99d-65f1-45ec-8a79-41d6de621a90 f8af80602ba31cbb4a4650e3bd6be82a {"aliquot_tag": "ALQ_cc5162be", "sample": "S54", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03735.RNA-Seq.transcriptome.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.transcriptome.gdc_realn.bam 9715992122 BAM transcriptome harmonized CPTAC3 5d7f1f01-1fc6-459b-ac9a-af2af0892aec e786ba92e91db72bebacf355699e76bd {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor"} -C3L-03735.WGS.N C3L-03735 GBM WGS blood_normal CPT0265770002 CPT0265770002.WholeGenome.RP-2158.bam 30302599855 BAM aligned CPTAC3 15654810-dd84-4d60-b564-a09430083c09 bd543e3919839303d126dc6bb82f5e66 {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal"} -C3L-03735.WGS.N.hg38 C3L-03735 GBM WGS blood_normal CPT0265770002 e7d56953-30f9-417c-9e40-1462762bea4f_wgs_gdc_realn.bam 90921510968 BAM harmonized CPTAC3 12fe818c-9d4e-47ea-b5d5-b697846bbecb bb0201c80c21f189595e46a7e18bf710 {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal"} -C3L-03735.WGS.T C3L-03735 GBM WGS tumor CPT0264120006 CPT0264120006.WholeGenome.RP-2158.bam 25957361172 BAM aligned CPTAC3 528458ab-ac6e-401f-8f36-1d58b1412a89 b72dabf1b77615c8b8107fbbed0e8e23 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor"} -C3L-03735.WGS.T.hg38 C3L-03735 GBM WGS tumor CPT0264120006 8cf70493-a5d8-4a66-af1d-89028cb10621_wgs_gdc_realn.bam 74067454129 BAM harmonized CPTAC3 2273e09f-c959-4216-b55b-8f39dd971741 da587998e33995b1a0f86f3d3b20dfee {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor"} -C3L-03735.WXS.N C3L-03735 GBM WXS blood_normal CPT0265770002 CPT0265770002.WholeExome.RP-1303.bam 24103085523 BAM aligned CPTAC3 1dc827d0-5da2-424f-be7e-b5d6b07b51b1 8f984a17a506cb3d243f1f82a504494e {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal"} -C3L-03735.WXS.N.hg38 C3L-03735 GBM WXS blood_normal CPT0265770002 e7d56953-30f9-417c-9e40-1462762bea4f_wxs_gdc_realn.bam 33186095115 BAM harmonized CPTAC3 e3e2c432-ec42-4d5c-848b-f53a31f5b494 3a708ffbb3939378d320133f651c2b6e {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal"} -C3L-03735.WXS.T C3L-03735 GBM WXS tumor CPT0264120006 CPT0264120006.WholeExome.RP-1303.bam 24321593437 BAM aligned CPTAC3 1a452dd6-c235-40bc-91b7-9102ecf5bd95 3e792cc544f232379d0c0dfa1b57667e {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor"} -C3L-03735.WXS.T.hg38 C3L-03735 GBM WXS tumor CPT0264120006 8cf70493-a5d8-4a66-af1d-89028cb10621_wxs_gdc_realn.bam 34460901803 BAM harmonized CPTAC3 b74b0bb2-b174-4779-9e16-0933e2fdbc02 78943ae9770ffdb292c5a348e0b66216 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor"} -C3L-03740.MethArray.Green.T C3L-03740 GBM Methylation_Array tumor CPT0249420006 204367490043_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 26aa6189-be18-41fd-86e1-44de3bf12f60 ff900628102ef73744153e7a8229aa6c {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor"} -C3L-03740.MethArray.Red.T C3L-03740 GBM Methylation_Array tumor CPT0249420006 204367490043_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 54320d84-5e1a-491e-97d5-9cae1e2f84bc 692b39d4f658cf8b968543ca5664614b {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor"} -C3L-03740.miRNA-Seq.S38_L008_R1.T C3L-03740 GBM miRNA-Seq tumor CPT0249420013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTAGCT_S38_L008_R1_001.unaln.bam 296311765 BAM S38_L008_R1 unaligned CPTAC3 00f61c28-9d49-4409-9ba8-ad80ec422b6b d5a840abb8393cdecd2900e612d222c6 {"aliquot_tag": "ALQ_46a04def", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03740.miRNA-Seq.T.hg38 C3L-03740 GBM miRNA-Seq tumor CPT0249420013 15d9eea2-4c08-49f3-99e8-e7423a98396f_mirnaseq_gdc_realn.bam 327607910 BAM harmonized CPTAC3 1c4158b3-be2d-42ce-a13e-1df099134333 07f87bb4f531f7cb9486ed91a4f24b51 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor"} -C3L-03740.RNA-Seq.chimeric.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.chimeric.gdc_realn.bam 31599562 BAM chimeric harmonized CPTAC3 db35be7e-96f4-404c-ad98-d051de8710fb d69a581867372952c60a5fdbaf4ea334 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor"} -C3L-03740.RNA-Seq.genomic.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.genomic.gdc_realn.bam 8340159150 BAM genomic harmonized CPTAC3 bd934086-82fb-41e1-b001-5ce601276307 a417bb7e99c9abfaa5dcc2c3e54fb856 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor"} -C3L-03740.RNA-Seq.S65_L008_R1.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ S65_L008_R1 unaligned CPTAC3 545a4b63-a08b-42bf-93f8-6b9faa29e42d 12cbe468f45f06aa4977560e7ccbe952 {"aliquot_tag": "ALQ_46a04def", "sample": "S65", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03740.RNA-Seq.S65_L008_R2.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ S65_L008_R2 unaligned CPTAC3 04802ae4-6a8a-400d-87e5-2822568997c5 b4f97787bfe789630d545698dc81470e {"aliquot_tag": "ALQ_46a04def", "sample": "S65", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03740.RNA-Seq.transcriptome.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.transcriptome.gdc_realn.bam 10233605535 BAM transcriptome harmonized CPTAC3 cbeb1b04-7d2a-4c13-95be-67e56cdb44c3 856da3f9fcffc5dff40bd648640d60e6 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor"} -C3L-03740.WGS.N C3L-03740 GBM WGS blood_normal CPT0250420002 CPT0250420002.WholeGenome.RP-2158.bam 21405427914 BAM aligned CPTAC3 c47ab067-c1c5-42b1-9e33-e4dc928e1a81 e2373336f47dfedaa92e136ac1ba879b {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal"} -C3L-03740.WGS.N.hg38 C3L-03740 GBM WGS blood_normal CPT0250420002 6983e835-2ae6-468a-adac-ec0464461c65_wgs_gdc_realn.bam 64109908623 BAM harmonized CPTAC3 75913059-161e-4163-8bcd-7682c8b705bd 7f97cad14161a8c7e1914e45e835afe2 {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal"} -C3L-03740.WGS.T C3L-03740 GBM WGS tumor CPT0249420006 CPT0249420006.WholeGenome.RP-2158.bam 29989797887 BAM aligned CPTAC3 2143c8e9-b69d-4741-be28-b2d942baae88 b0cecb8ab9ec2beeb1f05b4c7900c477 {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor"} -C3L-03740.WGS.T.hg38 C3L-03740 GBM WGS tumor CPT0249420006 5f411427-6a95-49fe-be0c-950f30692337_wgs_gdc_realn.bam 87814571471 BAM harmonized CPTAC3 1408af83-c51f-4a85-9ea5-0890c2678fce ec64674539eb1c2b8d1e6d4db44ee330 {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor"} -C3L-03740.WXS.N C3L-03740 GBM WXS blood_normal CPT0250420002 CPT0250420002.WholeExome.RP-1303.bam 22690999931 BAM aligned CPTAC3 74cd737d-4e4e-48a0-83b1-824bb3b13135 c22310503e3fd8ad4ac7434d1682c571 {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal"} -C3L-03740.WXS.N.hg38 C3L-03740 GBM WXS blood_normal CPT0250420002 6983e835-2ae6-468a-adac-ec0464461c65_wxs_gdc_realn.bam 31150698203 BAM harmonized CPTAC3 b3bbcc78-a7c4-4c55-99f3-829d3d394087 3d31964a854129b15c8249e67ccfa54e {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal"} -C3L-03740.WXS.T C3L-03740 GBM WXS tumor CPT0249420006 CPT0249420006.WholeExome.RP-1303.bam 19873227788 BAM aligned CPTAC3 4fe3a81b-3274-4ef3-86a8-7957912a7c87 8be2b78d8723badbc31a3bcf0ca1f608 {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor"} -C3L-03740.WXS.T.hg38 C3L-03740 GBM WXS tumor CPT0249420006 5f411427-6a95-49fe-be0c-950f30692337_wxs_gdc_realn.bam 27684153748 BAM harmonized CPTAC3 51b302f1-783a-421a-8abb-b6fbc2d8aa0f 9aeef4527ff479780da208fe5dc331cd {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor"} -C3L-03743.MethArray.Green.A C3L-03743 PDA Methylation_Array tissue_normal CPT0264180006 203561620043_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a0b86526-3f62-471e-af2b-34ad8bcd9f70 b2fc430ea214c861a7c243814171c1e4 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.MethArray.Green.T C3L-03743 PDA Methylation_Array tumor CPT0264150009 203561450102_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 1902a272-deea-4f6d-b9f0-e2c48eafe7e2 c4bb3f625b640ecc794a1e1182647b72 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03743.MethArray.Red.A C3L-03743 PDA Methylation_Array tissue_normal CPT0264180006 203561620043_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 2be6a8ab-199a-4d3d-8d75-dfb59df61b67 ffc00f09a1f4f65ccdab349fa76c1304 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.MethArray.Red.T C3L-03743 PDA Methylation_Array tumor CPT0264150009 203561450102_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 b31bb769-53d1-4487-872c-e706e7df18a2 9e6843a77cb48ae82739dc22d5f9266d {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03743.miRNA-Seq.A.hg38 C3L-03743 PDA miRNA-Seq tissue_normal CPT0264180009 21f4763c-7ada-4fe8-9c30-7a16b3aacbb1_mirnaseq_gdc_realn.bam 195968250 BAM harmonized CPTAC3 c7adb2cd-8259-41e4-a532-3050d915da27 08591f21c8481855c010677d2925d8bf {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.miRNA-Seq.S21_L004_R1.T C3L-03743 PDA miRNA-Seq tumor CPT0264150006 190712_UNC32-K00270_0192_BH7HL3BBXY_TCATTC_S21_L004_R1_001.unaln.bam 130956878 BAM S21_L004_R1 unaligned CPTAC3 93181071-a523-4122-8886-e8b4dc6a74a3 1d3486c01257e6c5cec3e64fbc26ea65 {"aliquot_tag": "ALQ_eecea33f", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03743.miRNA-Seq.S32_L002_R1.A C3L-03743 PDA miRNA-Seq tissue_normal CPT0264180009 190813_UNC32-K00270_0196_AH5MCWBBXY_TTAGGC_S32_L002_R1_001.unaln.bam 172055190 BAM S32_L002_R1 unaligned CPTAC3 019bcb70-cb67-411f-a6a6-7cc795d63eaa 4f3ced6a187a8e7deebfd67941cba974 {"aliquot_tag": "ALQ_86e17a1f", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.miRNA-Seq.T.hg38 C3L-03743 PDA miRNA-Seq tumor CPT0264150006 35c4f7f6-8592-4253-8f98-0e13191d86a5_mirnaseq_gdc_realn.bam 148592559 BAM harmonized CPTAC3 8eab6531-d6cc-419a-b7f9-874e9893783b b66f78f338c041cc8efa74ef3e21b60f {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor"} -C3L-03743.RNA-Seq.chimeric.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.chimeric.gdc_realn.bam 40791518 BAM chimeric harmonized CPTAC3 e260b1b6-738e-4d69-b072-48a0cc970b3a a04c85ae9bf3b063079c01395f2d17ec {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.RNA-Seq.chimeric.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.chimeric.gdc_realn.bam 34614800 BAM chimeric harmonized CPTAC3 16acb084-d312-4e3b-a2e8-cd7db393f13f c6da1d4f8e27d09bbcb54d73c2770633 {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor"} -C3L-03743.RNA-Seq.genomic.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.genomic.gdc_realn.bam 7946778805 BAM genomic harmonized CPTAC3 2083ece5-80fe-423a-a2e8-d74a213bd144 bb7372c66034ac9bbe6444c2b44291e7 {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.RNA-Seq.genomic.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.genomic.gdc_realn.bam 8948929869 BAM genomic harmonized CPTAC3 ef2f9bd7-f152-4c7a-8ff0-e656974a00e8 17a34d211e441a14fc5e794bb5c83f28 {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor"} -C3L-03743.RNA-Seq.S2_L001_R1.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 4230524943 FASTQ S2_L001_R1 unaligned CPTAC3 29514c3a-58c2-476f-a567-72ed756bf086 f1473c38a39a2fbc2bec0cafe5c6065e {"aliquot_tag": "ALQ_eecea33f", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03743.RNA-Seq.S2_L001_R2.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4689247891 FASTQ S2_L001_R2 unaligned CPTAC3 8a695131-9653-4fc6-b000-281393a6e318 35ce8dfa2dee79f12ce59c53c90b9d8a {"aliquot_tag": "ALQ_eecea33f", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03743.RNA-Seq.S5_L002_R1.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R1_001.fastq.gz 3837391076 FASTQ S5_L002_R1 unaligned CPTAC3 11338202-66e3-4dd0-9f5a-f2aac1b86a34 8c15eb7adedc6e14112d71e9ffffde3a {"aliquot_tag": "ALQ_86e17a1f", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.RNA-Seq.S5_L002_R2.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R2_001.fastq.gz 4110204192 FASTQ S5_L002_R2 unaligned CPTAC3 b64a6935-7492-4441-888c-9198b4d8b738 a586c265dd63748cb93001ab8309f386 {"aliquot_tag": "ALQ_86e17a1f", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.RNA-Seq.transcriptome.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.transcriptome.gdc_realn.bam 11821138286 BAM transcriptome harmonized CPTAC3 7c8e13c0-8604-4d55-a56f-0a95cca0240e e8460cc79f02f2e35dd6e6c2ea92a5b9 {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.RNA-Seq.transcriptome.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.transcriptome.gdc_realn.bam 11902401758 BAM transcriptome harmonized CPTAC3 d1a2678d-5d08-4045-b7dc-f1f11a90c064 ce8467c8ffa23d3f3bd687562f317d2a {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor"} -C3L-03743.Targeted.T C3L-03743 PDA Targeted_Sequencing tumor CPT0264150009 CPT0264150009.CustomSelection.RP-1303.PDO-18786.bam 5369962012 BAM aligned CPTAC3 0a8b2187-dd03-4f75-bf7a-69faf151aebd 17d238a62a2a4f1b2e19b63c37dbe262 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03743.Targeted.T.hg38 C3L-03743 PDA Targeted_Sequencing tumor CPT0264150009 b7f04fb8-fcca-4fb5-ba25-3ecd6b04e03f_targetedsequencing_gdc_realn.bam 7353411127 BAM harmonized CPTAC3 9aa52545-b3ae-4884-8d76-91f0b4a7e940 04c47664cdc7d28aee90e42ab2a8d35d {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03743.WGS.N C3L-03743 PDA WGS blood_normal CPT0265780002 CPT0265780002.WholeGenome.RP-1303.bam 77074451038 BAM aligned CPTAC3 9755034f-800b-48ac-b2c7-f81630678a8e a9118427aad419870534b3526ed7f17b {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03743.WGS.N.hg38 C3L-03743 PDA WGS blood_normal CPT0265780002 a2e55314-1448-495b-837b-af162c8d8a50_wgs_gdc_realn.bam 116705590779 BAM harmonized CPTAC3 49f6ffb6-0d9a-4b2e-8e06-9f60f846a099 900659b16b0fa9eab70f7c50677922ee {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03743.WGS.T C3L-03743 PDA WGS tumor CPT0264150009 CPT0264150009.WholeGenome.RP-1303.bam 68168100582 BAM aligned CPTAC3 226aa390-c0e8-4d94-9797-672690a3082e 52f6ee15c43d10abdf978c7852886fee {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03743.WGS.T.hg38 C3L-03743 PDA WGS tumor CPT0264150009 b7f04fb8-fcca-4fb5-ba25-3ecd6b04e03f_wgs_gdc_realn.bam 97597263167 BAM harmonized CPTAC3 a512c1e7-d660-4f7f-986a-611abb267047 6b7c8b0eb5aed3a171372dc87f56ae38 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03743.WXS.A C3L-03743 PDA WXS tissue_normal CPT0264180006 CPT0264180006.WholeExome.RP-1303.bam 25796347412 BAM aligned CPTAC3 a13fd5a1-c9d7-4ae1-b006-332733a910fc 9d1d37bb705e3a764c52a6420a1f3571 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.WXS.A.hg38 C3L-03743 PDA WXS tissue_normal CPT0264180006 24e3af70-12c6-41e9-ae60-a6571adb1fe5_wxs_gdc_realn.bam 35738830704 BAM harmonized CPTAC3 9a003041-ff24-4dbc-b5b2-23a1e1c0bf76 5a4d522e61e96a4d599503f2f41ffe17 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03743.WXS.N C3L-03743 PDA WXS blood_normal CPT0265780002 CPT0265780002.WholeExome.RP-1303.bam 22263816785 BAM aligned CPTAC3 99e801c3-853a-4831-9765-59a49062bb06 6560fb063cdbe63716af3e546534cd19 {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03743.WXS.N.hg38 C3L-03743 PDA WXS blood_normal CPT0265780002 a2e55314-1448-495b-837b-af162c8d8a50_wxs_gdc_realn.bam 30695064012 BAM harmonized CPTAC3 26620c71-1c71-4a22-9fbd-184e12a51cc8 fb276fd78f497eb2c96394e9acd51d08 {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03743.WXS.T C3L-03743 PDA WXS tumor CPT0264150009 CPT0264150009.WholeExome.RP-1303.bam 47732413616 BAM aligned CPTAC3 365a30bc-16e2-4348-9b4e-43ba4c1cefbe dfc63d8784dc4bdaab02fc34206e5fb4 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03743.WXS.T.hg38 C3L-03743 PDA WXS tumor CPT0264150009 b7f04fb8-fcca-4fb5-ba25-3ecd6b04e03f_wxs_gdc_realn.bam 67407961538 BAM harmonized CPTAC3 ab626169-f41c-4532-925b-e2860bf46e06 60b48774eeef0ef72d3737ab2256785e {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor"} -C3L-03744.MethArray.Green.T C3L-03744 GBM Methylation_Array tumor CPT0216920011 203219650221_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7d85f977-59ab-4262-90c3-55d76f360b27 f601ebcde8acea29e44a2b27b6676d3c {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor"} -C3L-03744.MethArray.Red.T C3L-03744 GBM Methylation_Array tumor CPT0216920011 203219650221_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 77076017-0be4-4b89-8d08-c21e41596d5e b27c1b0f8632a580742347cd575f6327 {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor"} -C3L-03744.miRNA-Seq.S30_L002_R1.T C3L-03744 GBM miRNA-Seq tumor CPT0216920018 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGAAA_S30_L002_R1_001.unaln.bam 226411237 BAM S30_L002_R1 unaligned CPTAC3 b7de4c30-15fa-4077-a781-789517a2befe 3ba869b4f613320eac770eb74a8a900b {"aliquot_tag": "ALQ_d344f934", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03744.miRNA-Seq.T.hg38 C3L-03744 GBM miRNA-Seq tumor CPT0216920018 2c396bc8-3c21-45a5-b729-c99ed50f5d16_mirnaseq_gdc_realn.bam 249307601 BAM harmonized CPTAC3 f3a74518-cb55-435b-a6d1-f7a41de5e1f5 5bc43ded9df34fd94ffe1a01e5eaac7b {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor"} -C3L-03744.RNA-Seq.chimeric.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.chimeric.gdc_realn.bam 66303586 BAM chimeric harmonized CPTAC3 75205d0a-44e2-4312-a319-54aa959dcb0a 5fb6517108070175a9cafef191230706 {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor"} -C3L-03744.RNA-Seq.genomic.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.genomic.gdc_realn.bam 10476268031 BAM genomic harmonized CPTAC3 9bfda417-45a0-47a3-bbd3-bc1d6c576a5f 70b9deb829ebe2f11d7f57be78040108 {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor"} -C3L-03744.RNA-Seq.S1_L001_R1.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4858139330 FASTQ S1_L001_R1 unaligned CPTAC3 035f8110-bb22-4229-9d3b-0dd4da238606 29edd6ed04384f8a45d1011f681794b7 {"aliquot_tag": "ALQ_d344f934", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03744.RNA-Seq.S1_L001_R2.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 5409623564 FASTQ S1_L001_R2 unaligned CPTAC3 42993232-1d7f-4def-9b3a-811428825733 c77abbcfdcb06f7b365d1a373582519b {"aliquot_tag": "ALQ_d344f934", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03744.RNA-Seq.transcriptome.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.transcriptome.gdc_realn.bam 11593582703 BAM transcriptome harmonized CPTAC3 27434d76-9d24-4197-833e-8c23ec115083 abfc8c1f67cb965de48bfd23bf85070a {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor"} -C3L-03744.WGS.N C3L-03744 GBM WGS blood_normal CPT0217940002 CPT0217940002.WholeGenome.RP-1303.bam 52411466113 BAM aligned CPTAC3 14d128b3-9403-40f4-870a-38bcad05e52d 7cc12f1884ae0af27f38036ad7fe6600 {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03744.WGS.N.hg38 C3L-03744 GBM WGS blood_normal CPT0217940002 3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wgs_gdc_realn.bam 76421878020 BAM harmonized CPTAC3 28786672-2983-417e-9c3f-32b2a8e7e114 be48f5ea8e14ec82a0cc0274fe0db4fc {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03744.WGS.T C3L-03744 GBM WGS tumor CPT0216920011 CPT0216920011.WholeGenome.RP-1303.bam 67876448704 BAM aligned CPTAC3 e602e2df-7f77-4fa9-8c60-ece16deea396 af27334d545b2c82327e2487ac464308 {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor"} -C3L-03744.WGS.T.hg38 C3L-03744 GBM WGS tumor CPT0216920011 b291d9bd-e99f-427c-a1d9-730d69d55a57_wgs_gdc_realn.bam 101148486261 BAM harmonized CPTAC3 603495d3-0a81-4668-a1c8-74a5bbbe8c6b 3cb6e7781f657197a729d922df6a0d8f {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor"} -C3L-03744.WXS.N C3L-03744 GBM WXS blood_normal CPT0217940002 CPT0217940002.WholeExome.RP-1303.bam 22729890191 BAM aligned CPTAC3 b2b4c5ad-f6f0-4027-b378-8e4115e9b6a9 f2fb6224e70de11780e1c59b5c00dbcf {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03744.WXS.N.hg38 C3L-03744 GBM WXS blood_normal CPT0217940002 3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wxs_gdc_realn.bam 31883747501 BAM harmonized CPTAC3 f068a4d6-f1c5-45bd-800d-d234245fcb1d 2158208dc2861f2763cc24582bff9959 {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal"} -C3L-03744.WXS.T C3L-03744 GBM WXS tumor CPT0216920011 CPT0216920011.WholeExome.RP-1303.bam 26906470146 BAM aligned CPTAC3 227d0648-896b-4b18-82e7-1f38ba950fd9 91454bcd73f6e99d7d2a1c3e835d89d0 {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor"} -C3L-03744.WXS.T.hg38 C3L-03744 GBM WXS tumor CPT0216920011 b291d9bd-e99f-427c-a1d9-730d69d55a57_wxs_gdc_realn.bam 36528897933 BAM harmonized CPTAC3 0ebf439e-c9b4-46d7-861e-bf93ee8330c7 92953e0342d3daab72a4e37463a8f83e {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor"} -C3L-03747.MethArray.Green.T C3L-03747 GBM Methylation_Array tumor CPT0217000007 203219650003_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 714701b1-984e-4287-9fba-8483809fcbe4 c6c856f3b1332b5aac749e138d4c4bdf {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor"} -C3L-03747.MethArray.Red.T C3L-03747 GBM Methylation_Array tumor CPT0217000007 203219650003_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 35fc7daa-b47d-4e94-a84d-6a0ca19ea63a 8753daf45c4870c7c0d7576143d2f005 {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor"} -C3L-03747.miRNA-Seq.S20_L008_R1.T C3L-03747 GBM miRNA-Seq tumor CPT0217000010 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L008_R1_001.unaln.bam 320312897 BAM S20_L008_R1 unaligned CPTAC3 7f8f5031-f0e4-48c8-a165-2711ddb05ac8 b7aca08371ee32fef62c4eb069bfb7d3 {"aliquot_tag": "ALQ_2627781a", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03747.miRNA-Seq.T.hg38 C3L-03747 GBM miRNA-Seq tumor CPT0217000010 842a216e-1e11-4a5e-a86b-e487872b6620_mirnaseq_gdc_realn.bam 373730804 BAM harmonized CPTAC3 fb7abda3-db8a-4d23-a40c-446af174df59 ad731a4793b9896b8a131f7b1f15eb02 {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor"} -C3L-03747.RNA-Seq.chimeric.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.chimeric.gdc_realn.bam 27567734 BAM chimeric harmonized CPTAC3 fc8cb01a-0022-4afe-b78b-09e2586031a7 15d293b8f5e94ce312598c1422b0ac1a {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor"} -C3L-03747.RNA-Seq.genomic.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.genomic.gdc_realn.bam 8271693915 BAM genomic harmonized CPTAC3 7fb6de1b-c78d-4c2d-9853-2485033cdb0b 1cb92cb41b64bda53de96eba96226fc1 {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor"} -C3L-03747.RNA-Seq.S8_L006_R1.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R1_001.fastq.gz 3582139637 FASTQ S8_L006_R1 unaligned CPTAC3 a901792d-b393-486f-bc02-850fb27a7f25 8826e2068168c0ecf41418e2c2737f24 {"aliquot_tag": "ALQ_2627781a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03747.RNA-Seq.S8_L006_R2.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R2_001.fastq.gz 3910029087 FASTQ S8_L006_R2 unaligned CPTAC3 883fce4d-a898-4223-9001-b7d58f416fbc 0d5943092e039c31960eec72cfec063b {"aliquot_tag": "ALQ_2627781a", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03747.RNA-Seq.transcriptome.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.transcriptome.gdc_realn.bam 10741855723 BAM transcriptome harmonized CPTAC3 79b77ade-a6aa-472c-8287-ec15ef5a5f78 e448a28a2dab91176303eda64bfe9cac {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor"} -C3L-03747.WGS.N C3L-03747 GBM WGS blood_normal CPT0217980002 CPT0217980002.WholeGenome.RP-1303.bam 58431032661 BAM aligned CPTAC3 669b9a17-1536-4600-8ed0-919981faa134 f91c93f09f647c87de6300e1a931b6ad {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03747.WGS.N.hg38 C3L-03747 GBM WGS blood_normal CPT0217980002 388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wgs_gdc_realn.bam 84283984691 BAM harmonized CPTAC3 f060af66-6986-4c8b-be4f-29950061dabb b81bcfba69849e6ab990371c9b00d570 {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03747.WGS.T C3L-03747 GBM WGS tumor CPT0217000007 CPT0217000007.WholeGenome.RP-1303.bam 64562644816 BAM aligned CPTAC3 d9c30c2f-9f9d-4903-8d15-831dfcd62ba9 609b70af2265950cd3f13f68deca97dd {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor"} -C3L-03747.WGS.T.hg38 C3L-03747 GBM WGS tumor CPT0217000007 22d36fbd-33f1-4d30-a20e-a3f59330c5fa_wgs_gdc_realn.bam 94170173043 BAM harmonized CPTAC3 ab83eaed-187a-4bb1-ad5c-a8e8c03828cc 73a781e562ca5e7e6e667f22b287045e {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor"} -C3L-03747.WXS.N C3L-03747 GBM WXS blood_normal CPT0217980002 CPT0217980002.WholeExome.RP-1303.bam 25730670462 BAM aligned CPTAC3 959e6132-d19a-4f98-8e2e-684c54740550 43ca1b19811bd1760923660294b1471e {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03747.WXS.N.hg38 C3L-03747 GBM WXS blood_normal CPT0217980002 388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wxs_gdc_realn.bam 35226285252 BAM harmonized CPTAC3 fd2385b8-fa91-4b20-ba21-8f923c27d77e 6c1c2dca0a445f709e9eb83b042dcad1 {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03747.WXS.T C3L-03747 GBM WXS tumor CPT0217000007 CPT0217000007.WholeExome.RP-1303.bam 23822732763 BAM aligned CPTAC3 130ad4ce-1be2-4293-aacc-4cf4cbcc4deb 6810452252d7faf78540e6183d6dad8a {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor"} -C3L-03747.WXS.T.hg38 C3L-03747 GBM WXS tumor CPT0217000007 22d36fbd-33f1-4d30-a20e-a3f59330c5fa_wxs_gdc_realn.bam 33063299390 BAM harmonized CPTAC3 6c189a6f-a22d-4f67-9644-822db2009f79 4ec6546df0ade747c0700b5993ef22b3 {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor"} -C3L-03748.MethArray.Green.T C3L-03748 GBM Methylation_Array tumor CPT0217060006 203219670054_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3a0f27a7-d5dc-45ca-bc73-0fd99da542d1 88057c868b1ab911a27124953afb544e {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor"} -C3L-03748.MethArray.Red.T C3L-03748 GBM Methylation_Array tumor CPT0217060006 203219670054_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 ca88ff06-722b-4ad0-9a5e-fab26ee22f7e 453ebf066892eb25b1b86f80cdab47bd {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor"} -C3L-03748.miRNA-Seq.S21_L008_R1.T C3L-03748 GBM miRNA-Seq tumor CPT0217060009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L008_R1_001.unaln.bam 167942884 BAM S21_L008_R1 unaligned CPTAC3 5a094f18-c348-41ff-9a5f-1fe453d25068 9969bbcfbc4968b9233e3c38dc1cbcd6 {"aliquot_tag": "ALQ_c9a0045f", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03748.miRNA-Seq.T.hg38 C3L-03748 GBM miRNA-Seq tumor CPT0217060009 36b0df4c-c20d-41ee-8154-611bd9420c34_mirnaseq_gdc_realn.bam 191577584 BAM harmonized CPTAC3 4678586a-33fa-4231-8b73-086f42a8d409 a7eae72a1037d6337275b51122ecd8e7 {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor"} -C3L-03748.RNA-Seq.chimeric.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.chimeric.gdc_realn.bam 33115368 BAM chimeric harmonized CPTAC3 595892a1-5e21-4e29-a2bd-4ae6270c1e21 846deaca8db4c6d3fc0b9620523a777f {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor"} -C3L-03748.RNA-Seq.genomic.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.genomic.gdc_realn.bam 8047579525 BAM genomic harmonized CPTAC3 29dadf29-9b6f-48b5-a1f4-0a7e4d6df773 8dfaa2a68f3ca27c4e580b228167d6f9 {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor"} -C3L-03748.RNA-Seq.S7_L006_R1.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R1_001.fastq.gz 3796424609 FASTQ S7_L006_R1 unaligned CPTAC3 f45eae70-fb91-4be8-b800-b75f57fad8c5 bb4429ba85efbb77869321ab2f6e08ea {"aliquot_tag": "ALQ_c9a0045f", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03748.RNA-Seq.S7_L006_R2.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R2_001.fastq.gz 3969682675 FASTQ S7_L006_R2 unaligned CPTAC3 02d3fcaa-2a96-4d16-b3c8-7c95b195ea82 b0a4c84c39c3faa0404969a6c1848317 {"aliquot_tag": "ALQ_c9a0045f", "sample": "S7", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03748.RNA-Seq.transcriptome.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.transcriptome.gdc_realn.bam 11819726876 BAM transcriptome harmonized CPTAC3 145171d1-7a4f-4599-b749-350c074cb542 daa7cb35a3a8a9d16e2473e51e8737cc {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor"} -C3L-03748.WGS.N C3L-03748 GBM WGS blood_normal CPT0218000002 CPT0218000002.WholeGenome.RP-1303.bam 57762347417 BAM aligned CPTAC3 970c43de-36e6-416f-ba5d-86278b80511c 85be68107439cada39079bf723b20973 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03748.WGS.N.hg38 C3L-03748 GBM WGS blood_normal CPT0218000002 cedd1569-11a3-49f4-a54c-36f18c88e15b_wgs_gdc_realn.bam 83504601495 BAM harmonized CPTAC3 ad507579-6e47-4698-aa55-5d47304df7dd ea795479d0abd0416c3e4de48866d091 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03748.WGS.T C3L-03748 GBM WGS tumor CPT0217060006 CPT0217060006.WholeGenome.RP-1303.bam 54717459819 BAM aligned CPTAC3 8645169e-b3b8-4fa6-9df6-e6297edaa00e 87a8025573ec03b1da5a6fafd49dfb40 {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor"} -C3L-03748.WGS.T.hg38 C3L-03748 GBM WGS tumor CPT0217060006 9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wgs_gdc_realn.bam 79848899956 BAM harmonized CPTAC3 330758b2-97f5-4111-a2b1-b80145713d3c 6792d64a519f5a545509c24eb402e532 {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor"} -C3L-03748.WXS.N C3L-03748 GBM WXS blood_normal CPT0218000002 CPT0218000002.WholeExome.RP-1303.bam 29923040072 BAM aligned CPTAC3 b30d60d8-a7fd-4c86-b014-89ecbea963bb 9ea85e662707293a142d2df49540b0d8 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03748.WXS.N.hg38 C3L-03748 GBM WXS blood_normal CPT0218000002 cedd1569-11a3-49f4-a54c-36f18c88e15b_wxs_gdc_realn.bam 42135220830 BAM harmonized CPTAC3 fd813224-f411-40be-93fd-86d17ba90dd1 25fe63c6258a6adc45cd7178d8b3db98 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal"} -C3L-03748.WXS.T C3L-03748 GBM WXS tumor CPT0217060006 CPT0217060006.WholeExome.RP-1303.bam 21251285282 BAM aligned CPTAC3 b61146b2-df6a-446f-90c6-88c5bcf452a2 22bfaf5504beb70d6d1b8444f27104dc {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor"} -C3L-03748.WXS.T.hg38 C3L-03748 GBM WXS tumor CPT0217060006 9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wxs_gdc_realn.bam 28933196213 BAM harmonized CPTAC3 e3fb355d-984d-41bf-a279-5464c72171e7 168571be72739a1986a7e8cf746babd5 {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor"} -C3L-03961.MethArray.Green.A C3L-03961 LSCC Methylation_Array tissue_normal CPT0232690006 203219640172_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b3f8f61a-5ab9-4b90-8473-e11d9709de25 345753241e75cd0b2cd932c2924eb28d {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.MethArray.Green.T C3L-03961 LSCC Methylation_Array tumor CPT0232670006 203219650157_R08C01_Grn.idat 13676227 IDAT Green NA CPTAC3 e38dc99d-8c61-4740-b897-a4dda1e6064b 7199e0bcbcc2613344735064f9f60fd1 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor"} -C3L-03961.MethArray.Red.A C3L-03961 LSCC Methylation_Array tissue_normal CPT0232690006 203219640172_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 52fb1682-bc97-48a4-ad27-9bc1d3e9327e a840de770322a733189aff4def84df80 {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.MethArray.Red.T C3L-03961 LSCC Methylation_Array tumor CPT0232670006 203219650157_R08C01_Red.idat 13676227 IDAT Red NA CPTAC3 0c03a3de-ba15-4907-8500-fdb97b469889 3b09e45bc4f2ad622c0c50490b7332a8 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor"} -C3L-03961.miRNA-Seq.A.hg38 C3L-03961 LSCC miRNA-Seq tissue_normal CPT0232690009 108e3a58-34a4-4061-a7eb-8748d095adcc_mirnaseq_gdc_realn.bam 195088072 BAM harmonized CPTAC3 6d6a2cff-ea1f-4c71-9f81-ccdb2dc9990b 4111778d9bf872c6bc0e4542e3a0eeee {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.miRNA-Seq.S17_L005_R1.A C3L-03961 LSCC miRNA-Seq tissue_normal CPT0232690009 190206_UNC31-K00269_0191_AH2WY5BBXY_CATGGC_S17_L005_R1_001.unaln.bam 171764705 BAM S17_L005_R1 unaligned CPTAC3 bed8c680-6faa-4715-9ca2-b257d31ba992 c9b4a436929a52677c8fb9e44b339452 {"aliquot_tag": "ALQ_8db45849", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.miRNA-Seq.S36_L004_R1.T C3L-03961 LSCC miRNA-Seq tumor CPT0232670009 190206_UNC31-K00269_0191_AH2WY5BBXY_AGTCAA_S36_L004_R1_001.unaln.bam 185363128 BAM S36_L004_R1 unaligned CPTAC3 0e14525a-b29b-49c7-9f67-f499e25f487a 4ca0007bc0ab08adca8de12f3a3f3928 {"aliquot_tag": "ALQ_3284e628", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03961.miRNA-Seq.T.hg38 C3L-03961 LSCC miRNA-Seq tumor CPT0232670009 5645a19b-cae5-4734-870b-bede7805921e_mirnaseq_gdc_realn.bam 208010996 BAM harmonized CPTAC3 30e6a55d-70c9-4538-9777-9aa14f98e7b3 b8e9ef81bf3d67bc9857d3491cd13576 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_75249cf8.miRNA-Seq.S44_L002_R1.T C3L-03961 LSCC miRNA-Seq tumor CPT0232640009 190508_UNC31-K00269_0215_BH7FYKBBXY_TATAAT_S44_L002_R1_001.unaln.bam 226095721 BAM S44_L002_R1 unaligned CPTAC3 740d37e8-f7a4-47ee-91ac-9981cc53682b 46161bbb7cd966c458cfaed2ec2cddae {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_75249cf8.miRNA-Seq.T.hg38 C3L-03961 LSCC miRNA-Seq tumor CPT0232640009 85d5ed0a-712a-4eb8-be3b-2eb91d8c577e_mirnaseq_gdc_realn.bam 257204134 BAM harmonized CPTAC3 86f70ae8-27b8-4c45-a417-338741ebf733 7a1965c3dbc82fc0bb494d6d65b61fb0 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_75249cf8.RNA-Seq.chimeric.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.chimeric.gdc_realn.bam 32035473 BAM chimeric harmonized CPTAC3 69b01779-3522-46f1-9eea-5d362426a306 409fcaee29a61157e728362716dcd02c {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_75249cf8.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.genomic.gdc_realn.bam 8245589179 BAM genomic harmonized CPTAC3 dc7401ba-cd0c-418a-9b7d-cb3d20011f82 cdf66b3ee672bac718951dc5394a4ceb {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_75249cf8.RNA-Seq.S26_L007_R1.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R1_001.fastq.gz 3927636537 FASTQ S26_L007_R1 unaligned CPTAC3 ba4d2ef4-56f6-4f5b-a4b8-994751624d3d 2ed32e0673882760b3c399b8c17f1f53 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_75249cf8.RNA-Seq.S26_L007_R2.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R2_001.fastq.gz 4480904348 FASTQ S26_L007_R2 unaligned CPTAC3 b1cb4e71-5736-4e37-9529-47023207e048 1b639ead56f342c407ea3390b3c0f6a1 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_75249cf8.RNA-Seq.transcriptome.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.transcriptome.gdc_realn.bam 10334044777 BAM transcriptome harmonized CPTAC3 29767c57-aefe-4cb0-91d9-0e2308684fa0 0f312a4fc007287c5cb73d264038e4f4 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_e59b8169.MethArray.Green.T C3L-03961 LSCC Methylation_Array tumor CPT0232640006 203561620008_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3e7670e5-a1b6-4311-b9f9-66c0888e11e6 81b7f14f5f8037cf8b60a009a109fca4 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_e59b8169.MethArray.Red.T C3L-03961 LSCC Methylation_Array tumor CPT0232640006 203561620008_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 f57df523-6bda-435b-9771-0e640833c40b a8697fa7694bb0c41aa7586142eacd0f {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_e59b8169.WGS.T C3L-03961 LSCC WGS tumor CPT0232640006 CPT0232640006.WholeGenome.RP-1303.bam 70426544869 BAM aligned CPTAC3 9dddfa8a-ecc5-4dd8-9201-29841cf6afab 8eec59243fe148e575be67cc51cd9905 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_e59b8169.WGS.T.hg38 C3L-03961 LSCC WGS tumor CPT0232640006 3610bec5-9fcf-4587-8898-7af65b5599ce_wgs_gdc_realn.bam 100998187010 BAM harmonized CPTAC3 57467653-a720-43e9-b99b-da8a504a5bb7 a94b8b806142b5249ada5ef778ea3c9e {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_e59b8169.WXS.T C3L-03961 LSCC WXS tumor CPT0232640006 CPT0232640006.WholeExome.RP-1303.bam 25059779985 BAM aligned CPTAC3 fa72b544-9148-4039-91b6-e2036467c1c0 43a4447e4081b8b4fa3bfc007a264889 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.REP_e59b8169.WXS.T.hg38 C3L-03961 LSCC WXS tumor CPT0232640006 3610bec5-9fcf-4587-8898-7af65b5599ce_wxs_gdc_realn.bam 35196222802 BAM harmonized CPTAC3 dfaf297d-c282-4eeb-8e2c-9f67d9c13b01 d88e70bf9ecb351572d149d7982d5046 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3L-03961.RNA-Seq.chimeric.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.chimeric.gdc_realn.bam 119727443 BAM chimeric harmonized CPTAC3 ca8d6c8d-14ce-4750-92a7-084197b1b97a ca9e6e5446bc571dd5ffcded727f5083 {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.RNA-Seq.chimeric.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.chimeric.gdc_realn.bam 165584581 BAM chimeric harmonized CPTAC3 11aa20e3-e67a-40b6-9617-22dc2b18e457 95851d7592704914509af90652a265c8 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor"} -C3L-03961.RNA-Seq.genomic.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.genomic.gdc_realn.bam 9149910418 BAM genomic harmonized CPTAC3 34fa5c6a-5419-4487-a11a-b0786970d91e 9a72ccf39ebfef85e91420783bd71ca3 {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.genomic.gdc_realn.bam 8970931712 BAM genomic harmonized CPTAC3 3c20c47a-db1f-4212-b72f-e549e6635ada 452937303ab80ec6dd023e5d9d845499 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor"} -C3L-03961.RNA-Seq.S2_L007_R1.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 4461119091 FASTQ S2_L007_R1 unaligned CPTAC3 f05b42a3-d863-44c6-977b-2b06cd34fc19 d90ed3d560552ef8eca3e6e10e39fa72 {"aliquot_tag": "ALQ_8db45849", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.RNA-Seq.S2_L007_R2.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 4968859911 FASTQ S2_L007_R2 unaligned CPTAC3 21c373d0-fde0-495e-8052-71de8db49d16 d2cbec6e154a268ecaf742ea9dd2fb37 {"aliquot_tag": "ALQ_8db45849", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.RNA-Seq.S6_L002_R1.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R1_001.fastq.gz 4028566384 FASTQ S6_L002_R1 unaligned CPTAC3 0fb41a04-a113-43f8-bf41-3ebfeaa16b15 b9fbf8698eed600c4f151391333fd93b {"aliquot_tag": "ALQ_3284e628", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03961.RNA-Seq.S6_L002_R2.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R2_001.fastq.gz 4378573275 FASTQ S6_L002_R2 unaligned CPTAC3 52c04f81-ce8a-4377-bfd3-4c4bb0c2400a d28049aa8729a0249fafde2c80550945 {"aliquot_tag": "ALQ_3284e628", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03961.RNA-Seq.transcriptome.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.transcriptome.gdc_realn.bam 10497272515 BAM transcriptome harmonized CPTAC3 8ab77529-a285-4b82-9f7d-3bee62251696 2fd79f11256f1f23cf9419dbacf5e4cd {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.RNA-Seq.transcriptome.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.transcriptome.gdc_realn.bam 9202700260 BAM transcriptome harmonized CPTAC3 54fe5f8f-26d4-4aa8-9e31-5b6491d1fd8f a03c50afe787b3e30b5eb917c28e29a2 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor"} -C3L-03961.WGS.N C3L-03961 LSCC WGS blood_normal CPT0232790002 CPT0232790002.WholeGenome.RP-1303.bam 56167827193 BAM aligned CPTAC3 544d8452-b929-4ccf-8549-cc6e4fd538af f94dd472492a16e9343ed5fae782e265 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal"} -C3L-03961.WGS.N.hg38 C3L-03961 LSCC WGS blood_normal CPT0232790002 dec7ca10-fdd0-4772-9083-99eb76cada5a_wgs_gdc_realn.bam 80586310895 BAM harmonized CPTAC3 5330bea7-b3fe-45b7-9078-1a99f80b2157 351564d652e783f01015357577e7d5b5 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal"} -C3L-03961.WGS.T C3L-03961 LSCC WGS tumor CPT0232670006 CPT0232670006.WholeGenome.RP-1303.bam 67575734614 BAM aligned CPTAC3 b49cb4b7-3c9b-45fe-ab8e-6fe4b4c050cd c33ac5b3408ceed7814e3484bd842095 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor"} -C3L-03961.WGS.T.hg38 C3L-03961 LSCC WGS tumor CPT0232670006 be4f00b4-d05d-4ad9-a26a-cfb747526f9d_wgs_gdc_realn.bam 99628225275 BAM harmonized CPTAC3 6f42471c-c15b-48ca-8c9e-416365913a68 3fb1576762555eb259fd166d02269f54 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor"} -C3L-03961.WXS.A C3L-03961 LSCC WXS tissue_normal CPT0232690006 CPT0232690006.WholeExome.RP-1303.bam 25075624618 BAM aligned CPTAC3 8e9a0757-992b-46bd-ba4b-943b48646b85 1e30e053003d31c9c40ec4108a0d29f0 {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.WXS.A.hg38 C3L-03961 LSCC WXS tissue_normal CPT0232690006 0b891746-b74c-4d72-ac79-b4f385c34f54_wxs_gdc_realn.bam 34877308328 BAM harmonized CPTAC3 b452c909-bc0e-4c55-a50f-49f96b91a0a0 a3dc708e7fd688bba2e7db313d7c2c8d {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03961.WXS.N C3L-03961 LSCC WXS blood_normal CPT0232790002 CPT0232790002.WholeExome.RP-1303.bam 24451977536 BAM aligned CPTAC3 8ebe01e0-1515-46cf-b690-e2742cf113be 3bc6d1f02a5ecda64d5bac2e1b1a30e6 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal"} -C3L-03961.WXS.N.hg38 C3L-03961 LSCC WXS blood_normal CPT0232790002 dec7ca10-fdd0-4772-9083-99eb76cada5a_wxs_gdc_realn.bam 33319536001 BAM harmonized CPTAC3 4ad060d2-2819-4203-8e6c-92041543ab83 ce66852defa42082012b207a1b9afd17 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal"} -C3L-03961.WXS.T C3L-03961 LSCC WXS tumor CPT0232670006 CPT0232670006.WholeExome.RP-1303.bam 21760809510 BAM aligned CPTAC3 cfaaad4a-ab03-496d-a1bb-3a43654fa5df ffe192405ed641ae26e6964d67e1bd47 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor"} -C3L-03961.WXS.T.hg38 C3L-03961 LSCC WXS tumor CPT0232670006 be4f00b4-d05d-4ad9-a26a-cfb747526f9d_wxs_gdc_realn.bam 30127197737 BAM harmonized CPTAC3 07aaaf88-344a-4b44-b7ff-d160940d5dbc d11597f0f1f65121bd3b756bf2ef84e3 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor"} -C3L-03962.MethArray.Green.A C3L-03962 LSCC Methylation_Array tissue_normal CPT0233160006 203219650176_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4e88b7ac-1db6-4925-b29c-f711de8c48be 992ea1f4217521c5fff78ccf7bcd4ad7 {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.MethArray.Green.T C3L-03962 LSCC Methylation_Array tumor CPT0233120006 203219750071_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 39b97d0b-f1a2-4cfc-bd46-901ef8ef1396 8952abdaaa2f7bf25013382a2c5886a4 {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor"} -C3L-03962.MethArray.Red.A C3L-03962 LSCC Methylation_Array tissue_normal CPT0233160006 203219650176_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 ae73dc70-a418-471d-b658-9697d6e5e6df 3b6ae4406861e6159b07a4ae2923c8d0 {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.MethArray.Red.T C3L-03962 LSCC Methylation_Array tumor CPT0233120006 203219750071_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 39c5353f-5758-490e-931c-525638046475 6385011768f8546523449266c04737cb {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor"} -C3L-03962.miRNA-Seq.A.hg38 C3L-03962 LSCC miRNA-Seq tissue_normal CPT0233160009 8d8badbb-d87c-4feb-99a8-9ccf5943e87d_mirnaseq_gdc_realn.bam 245883161 BAM harmonized CPTAC3 cd7d04ee-bbed-4032-ba74-27119046b502 8fd86e021b4629a90499891031c90a84 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.miRNA-Seq.S16_L005_R1.A C3L-03962 LSCC miRNA-Seq tissue_normal CPT0233160009 190206_UNC31-K00269_0191_AH2WY5BBXY_CATTTT_S16_L005_R1_001.unaln.bam 216106182 BAM S16_L005_R1 unaligned CPTAC3 bdb74aa6-a8dd-4ab2-bac6-e5de9a502cc3 dbe026c75941ecb4290aabcefa5fe366 {"aliquot_tag": "ALQ_b496f494", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.miRNA-Seq.S6_L007_R1.T C3L-03962 LSCC miRNA-Seq tumor CPT0233120013 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L007_R1_001.unaln.bam 268366156 BAM S6_L007_R1 unaligned CPTAC3 f1f73d81-302b-4917-8924-a96db2776e15 2b1d9607e097437467f3555cba378feb {"aliquot_tag": "ALQ_b8d88a0b", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03962.miRNA-Seq.T.hg38 C3L-03962 LSCC miRNA-Seq tumor CPT0233120013 bcc6a9c0-d52a-4624-8503-22788ff5978a_mirnaseq_gdc_realn.bam 309254156 BAM harmonized CPTAC3 9476f204-20d8-47cf-915d-b083ab6ca3fa 9cd89e52967d5411dec305f8984d8840 {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor"} -C3L-03962.RNA-Seq.chimeric.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.chimeric.gdc_realn.bam 235978957 BAM chimeric harmonized CPTAC3 7643568f-6dd5-453d-abc4-ef33ba0e45fd 7213a1c2fb83c0ea88b167cb8ac74b32 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.RNA-Seq.chimeric.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.chimeric.gdc_realn.bam 44312940 BAM chimeric harmonized CPTAC3 b84d9f1d-51ba-4320-88af-a9d1f4a538ab 0537a56964ee69e7c4f9a350100a098d {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor"} -C3L-03962.RNA-Seq.genomic.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.genomic.gdc_realn.bam 8794069178 BAM genomic harmonized CPTAC3 90f800e5-a6e6-4d5b-9a15-c97d197fe0c5 f304e56f3c919490b385fe0f3ad8a916 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.RNA-Seq.genomic.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.genomic.gdc_realn.bam 7792828844 BAM genomic harmonized CPTAC3 d79541eb-5118-413f-81b2-e897f48a6b4d bee78697c8d571a4366af45b89e01ce2 {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor"} -C3L-03962.RNA-Seq.S1_L007_R1.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4038869253 FASTQ S1_L007_R1 unaligned CPTAC3 52fe8d29-0a32-48e6-8eb8-6a211ad92dd2 6b434fdc241c5884367468746843bcb8 {"aliquot_tag": "ALQ_b496f494", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.RNA-Seq.S1_L007_R2.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 4676819767 FASTQ S1_L007_R2 unaligned CPTAC3 2dc6445a-ed6b-4fbf-a422-ba9160d8b4cb 8c2ff5d70b37643dd4c14ed538d7823f {"aliquot_tag": "ALQ_b496f494", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.RNA-Seq.S5_L003_R1.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R1_001.fastq.gz 3676621657 FASTQ S5_L003_R1 unaligned CPTAC3 5e947edc-8cd1-4c9f-8b71-98f9ea49486b 7e8a42bbd284dcee8b347b26af635c69 {"aliquot_tag": "ALQ_b8d88a0b", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03962.RNA-Seq.S5_L003_R2.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R2_001.fastq.gz 4012712752 FASTQ S5_L003_R2 unaligned CPTAC3 d167e9a0-245c-4a57-86c8-4ca980bcbf85 d423379e5c71af8a1839979c59da7165 {"aliquot_tag": "ALQ_b8d88a0b", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03962.RNA-Seq.transcriptome.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.transcriptome.gdc_realn.bam 9320059759 BAM transcriptome harmonized CPTAC3 30227a44-bdf4-4f8a-b2bf-b099a6f0fff0 a4b24fec49b7a1660011bd2e815236f1 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.RNA-Seq.transcriptome.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.transcriptome.gdc_realn.bam 9064182470 BAM transcriptome harmonized CPTAC3 c408b2f2-aa85-43c8-8bb5-455b49ebb9cd 4d5495129ec2cd28e15b2c6204f267bd {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor"} -C3L-03962.WGS.N C3L-03962 LSCC WGS blood_normal CPT0233260002 CPT0233260002.WholeGenome.RP-1303.bam 70978416034 BAM aligned CPTAC3 22892109-211c-4f97-860b-e36236fbc2fd 40fefb8356374a18a6e5779a2362f9c8 {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03962.WGS.N.hg38 C3L-03962 LSCC WGS blood_normal CPT0233260002 02e2349f-c2ee-479c-81e2-1ce03fb3485e_wgs_gdc_realn.bam 105084569419 BAM harmonized CPTAC3 5b1df6c8-e378-4d45-91e0-142ad3ee7a87 1f818bcc7b320c14b3f1308be763f049 {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03962.WGS.T C3L-03962 LSCC WGS tumor CPT0233120006 CPT0233120006.WholeGenome.RP-1303.bam 53048643458 BAM aligned CPTAC3 1d9f35f4-add9-42d2-9802-ba454573ad03 9c396147517ae623706c900fc42c2231 {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor"} -C3L-03962.WGS.T.hg38 C3L-03962 LSCC WGS tumor CPT0233120006 fa7582c9-d7a9-42d8-8fe2-e358ef604ee8_wgs_gdc_realn.bam 78199008186 BAM harmonized CPTAC3 f451a309-b730-4310-a594-27fa3985549e c45320818e3b3bdad441d47cd9fdc4df {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor"} -C3L-03962.WXS.A C3L-03962 LSCC WXS tissue_normal CPT0233160006 CPT0233160006.WholeExome.RP-1303.bam 21432316097 BAM aligned CPTAC3 c8d6e342-80d8-41ac-b850-44bcdb7ebefd ec8f78eaa15069ffda0c89dfccf93ecd {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.WXS.A.hg38 C3L-03962 LSCC WXS tissue_normal CPT0233160006 e07770f4-d62b-47a6-a06a-40c4cb55c429_wxs_gdc_realn.bam 30226593969 BAM harmonized CPTAC3 d52111eb-8d06-4dfe-a8da-7017afba7f5b de8835efa33e154e042d50b99a8f738a {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03962.WXS.N C3L-03962 LSCC WXS blood_normal CPT0233260002 CPT0233260002.WholeExome.RP-1303.bam 23830102973 BAM aligned CPTAC3 69589ef4-c49f-4cd7-a1f4-deb142c86416 7870fef3c2cad219f9681d4101a8c5bd {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03962.WXS.N.hg38 C3L-03962 LSCC WXS blood_normal CPT0233260002 02e2349f-c2ee-479c-81e2-1ce03fb3485e_wxs_gdc_realn.bam 32413838670 BAM harmonized CPTAC3 2fe277de-9a3a-47e9-8a69-33ed1f7da0ff 2e6ba1ed56992e1649ebb6d9481f4963 {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal"} -C3L-03962.WXS.T C3L-03962 LSCC WXS tumor CPT0233120006 CPT0233120006.WholeExome.RP-1303.bam 33000954598 BAM aligned CPTAC3 0a7e2173-b6bf-4714-a5f3-539dc8d5e048 56abda4947b1d951c86d6556b6ffb81b {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor"} -C3L-03962.WXS.T.hg38 C3L-03962 LSCC WXS tumor CPT0233120006 fa7582c9-d7a9-42d8-8fe2-e358ef604ee8_wxs_gdc_realn.bam 45456438728 BAM harmonized CPTAC3 d541a90b-a0cc-4cf5-bd39-83e9a90c9809 eac8fc35a8e4a9cbb9e2387b17ae5b9d {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor"} -C3L-03963.MethArray.Green.A C3L-03963 LSCC Methylation_Array tissue_normal CPT0227420006 203219640133_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79dd6b11-6aed-4256-a57e-970010d81279 81194b71a69260d82529fff63a03ec72 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.MethArray.Green.T C3L-03963 LSCC Methylation_Array tumor CPT0227400006 203219640068_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a5b6422c-987d-4221-b8fb-32732ebf98d1 114a798466f514d71c82199ae3060699 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor"} -C3L-03963.MethArray.Red.A C3L-03963 LSCC Methylation_Array tissue_normal CPT0227420006 203219640133_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 53c41917-3be9-430f-b22d-ef34d2cd13e8 af3df89b84f19add2a874944873ecd97 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.MethArray.Red.T C3L-03963 LSCC Methylation_Array tumor CPT0227400006 203219640068_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 c4aee506-e504-4846-bdab-142db0bfb36a 6bdfcfc8ccc0139eaad6ef2116eefd39 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor"} -C3L-03963.miRNA-Seq.A.hg38 C3L-03963 LSCC miRNA-Seq tissue_normal CPT0227420009 d998ce1d-7cb9-47b9-8356-de655a634745_mirnaseq_gdc_realn.bam 226967352 BAM harmonized CPTAC3 bbcce0bb-67d8-450d-8f9f-d5944ffeb11e d40abca9ed0b7ec428e7f168feabc9c3 {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.miRNA-Seq.S24_L003_R1.T C3L-03963 LSCC miRNA-Seq tumor CPT0227400009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATTCCT_S24_L003_R1_001.unaln.bam 174436637 BAM S24_L003_R1 unaligned CPTAC3 3349b2fa-de9c-4e01-a6c8-d29e99a54f76 6a9e01dabfa0ef583e9e57470c67a05d {"aliquot_tag": "ALQ_53feb40a", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03963.miRNA-Seq.S6_L005_R1.A C3L-03963 LSCC miRNA-Seq tissue_normal CPT0227420009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCATTC_S6_L005_R1_001.unaln.bam 202777944 BAM S6_L005_R1 unaligned CPTAC3 a973632c-1e83-47a0-bd14-4d1ec49e992d 2b8f29f78c666d333f5af8713404baa5 {"aliquot_tag": "ALQ_293ee76a", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.miRNA-Seq.T.hg38 C3L-03963 LSCC miRNA-Seq tumor CPT0227400009 34bfc20e-cf76-4d61-8605-399ebff9a296_mirnaseq_gdc_realn.bam 195655805 BAM harmonized CPTAC3 8835a0ec-d3fb-47b6-bb32-324cfa3f63ab ddabc2c70a7124ad1d0ad50daa65f877 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor"} -C3L-03963.RNA-Seq.chimeric.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.chimeric.gdc_realn.bam 109579574 BAM chimeric harmonized CPTAC3 041c6eca-5af6-4f36-a8a0-47c7d0cc15c7 481da5604052e82341903ba2161028c7 {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.RNA-Seq.chimeric.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.chimeric.gdc_realn.bam 70141974 BAM chimeric harmonized CPTAC3 a6c4d25c-6b8b-47c9-b057-9c950f23bde6 8dccca4bd8ab0f6ebf6015a7eb8b81c7 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor"} -C3L-03963.RNA-Seq.genomic.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.genomic.gdc_realn.bam 6637014987 BAM genomic harmonized CPTAC3 5f754fc9-85d9-4728-997a-b2ae567e2613 62489dee86e759925a997f90e3f99a4c {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.RNA-Seq.genomic.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.genomic.gdc_realn.bam 9266692984 BAM genomic harmonized CPTAC3 6ceef58d-217e-4429-82b4-1fc88967f534 f9085980f61fce8e9117812de98be9c3 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor"} -C3L-03963.RNA-Seq.S10_L008_R1.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R1_001.fastq.gz 3704752687 FASTQ S10_L008_R1 unaligned CPTAC3 637c9e1d-784f-4821-8b09-e98d39848dd9 69e612d357977ffbe1cc63689105d72f {"aliquot_tag": "ALQ_53feb40a", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03963.RNA-Seq.S10_L008_R2.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R2_001.fastq.gz 4097929870 FASTQ S10_L008_R2 unaligned CPTAC3 b00501a5-1535-4721-8538-2f96a975ae75 c7cad77d5e685a52767e19d25442afda {"aliquot_tag": "ALQ_53feb40a", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03963.RNA-Seq.S7_L002_R1.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R1_001.fastq.gz 3045025236 FASTQ S7_L002_R1 unaligned CPTAC3 50c2192e-d98a-42cf-817a-a10223b6102a b71ab01e3b9e5d8bac28053f73277dd7 {"aliquot_tag": "ALQ_293ee76a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.RNA-Seq.S7_L002_R2.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R2_001.fastq.gz 3314142862 FASTQ S7_L002_R2 unaligned CPTAC3 6468e541-459f-4bde-9476-70d70ada41ff 88f4ed03ab73d14d110d1d9914a69969 {"aliquot_tag": "ALQ_293ee76a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.RNA-Seq.transcriptome.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.transcriptome.gdc_realn.bam 7366262123 BAM transcriptome harmonized CPTAC3 f927c4cd-bbfa-40ac-b759-75f91cb402b5 094048dd80c81479a5c88b1c1466cc0c {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.RNA-Seq.transcriptome.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.transcriptome.gdc_realn.bam 8254874913 BAM transcriptome harmonized CPTAC3 8faedf56-e085-4a8b-9dc8-eaa863b96573 9c4445046203da313f86668c4b9e15c2 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor"} -C3L-03963.WGS.N C3L-03963 LSCC WGS blood_normal CPT0227530002 CPT0227530002.WholeGenome.RP-1303.bam 53665950297 BAM aligned CPTAC3 d6bd99fb-aa71-453e-b90c-5ddd455b7a14 b32e4ca62aa82fc2130dcfcffe0e5b25 {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03963.WGS.N.hg38 C3L-03963 LSCC WGS blood_normal CPT0227530002 d14970f8-64a4-4186-bec7-ccdf5e2a0505_wgs_gdc_realn.bam 77982457295 BAM harmonized CPTAC3 98737e65-d960-4a55-be3e-39b0f1372dad cf5d67b82a7dc820db518477e26b9a0f {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03963.WGS.T C3L-03963 LSCC WGS tumor CPT0227400006 CPT0227400006.WholeGenome.RP-1303.bam 69801381618 BAM aligned CPTAC3 b0a418fb-a789-4e04-b838-cc21d9fdf7a9 558ecf9ae97170f5f62358b1b616a1b3 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor"} -C3L-03963.WGS.T.hg38 C3L-03963 LSCC WGS tumor CPT0227400006 d2d9af9d-8785-44b7-b3f2-3359c624c777_wgs_gdc_realn.bam 101505490789 BAM harmonized CPTAC3 3b7b021f-f2d0-4d48-8904-8888170b4959 0bf909d6f1befdf63ce4745a2c8cdb77 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor"} -C3L-03963.WXS.A C3L-03963 LSCC WXS tissue_normal CPT0227420006 CPT0227420006.WholeExome.RP-1303.bam 22276838983 BAM aligned CPTAC3 a1a3b104-ae04-49d9-ad72-b37fb9dce940 03d4e2fe66baacc21307252f96be50e8 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.WXS.A.hg38 C3L-03963 LSCC WXS tissue_normal CPT0227420006 408abbff-f25e-4a7c-99fc-9b1ac5ba3cc5_wxs_gdc_realn.bam 31759975670 BAM harmonized CPTAC3 e53e2db6-1cad-4475-a683-2310ebf521cc 80a2f6cb708fd578612bccca03acae90 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03963.WXS.N C3L-03963 LSCC WXS blood_normal CPT0227530002 CPT0227530002.WholeExome.RP-1303.bam 25790684271 BAM aligned CPTAC3 28254079-e57c-4ddd-93f3-faaf928b633e 5bbb174376b97ce3ae04b018b7532a4f {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03963.WXS.N.hg38 C3L-03963 LSCC WXS blood_normal CPT0227530002 d14970f8-64a4-4186-bec7-ccdf5e2a0505_wxs_gdc_realn.bam 35174358636 BAM harmonized CPTAC3 04555288-8327-4491-89cd-a06803176765 1a11144a846bbc937be72b1d7360cb42 {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03963.WXS.T C3L-03963 LSCC WXS tumor CPT0227400006 CPT0227400006.WholeExome.RP-1303.bam 23022579057 BAM aligned CPTAC3 b6dccb03-241a-4716-b9ed-b5ac22767618 3cd1bc8b6cc62a8d94ea9b0f0386292f {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor"} -C3L-03963.WXS.T.hg38 C3L-03963 LSCC WXS tumor CPT0227400006 d2d9af9d-8785-44b7-b3f2-3359c624c777_wxs_gdc_realn.bam 31663441009 BAM harmonized CPTAC3 ff302d49-b116-4560-a382-d018b852b5d5 90f1f15ddcb16b366477427ed409c5a4 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor"} -C3L-03965.MethArray.Green.A C3L-03965 LSCC Methylation_Array tissue_normal CPT0207250009 203219670106_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 df2e7cff-1b74-4038-b97b-73b91e1e8dd3 55bf4ee88d3c6278c5980cf782061318 {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.MethArray.Green.T C3L-03965 LSCC Methylation_Array tumor CPT0207210006 203219720176_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2f526291-4a94-46e8-8d94-74d21565a544 0bf98435602acedaaba57cc7d3ed2b29 {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor"} -C3L-03965.MethArray.Red.A C3L-03965 LSCC Methylation_Array tissue_normal CPT0207250009 203219670106_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 0daa01c3-03a9-4783-bdee-896fae31fbec 4e1c70070a08215cd8db8b3e0474c75f {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.MethArray.Red.T C3L-03965 LSCC Methylation_Array tumor CPT0207210006 203219720176_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 7eb680d1-938e-444e-bf7e-1d2b6a2607cb 50309d7770d5208bcdf7b51ef384d3dd {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor"} -C3L-03965.miRNA-Seq.A.hg38 C3L-03965 LSCC miRNA-Seq tissue_normal CPT0207250006 7aa350e8-d42c-4405-97a5-1161f136e421_mirnaseq_gdc_realn.bam 225784617 BAM harmonized CPTAC3 695637f6-ba5a-4687-8ab6-c435828b825d 329b840cd6fa57afd24e2b6c70fa0609 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.miRNA-Seq.S24_L005_R1.A C3L-03965 LSCC miRNA-Seq tissue_normal CPT0207250006 190206_UNC31-K00269_0191_AH2WY5BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 199058676 BAM S24_L005_R1 unaligned CPTAC3 b298878d-5f10-4d17-8c83-0b0f6e4a1125 0fb9abfc5270a17e46acd0be6dca444e {"aliquot_tag": "ALQ_9fddc28b", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.miRNA-Seq.S4_L001_R1.T C3L-03965 LSCC miRNA-Seq tumor CPT0207210009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGAAG_S4_L001_R1_001.unaln.bam 194196908 BAM S4_L001_R1 unaligned CPTAC3 89b2a2bf-324b-47be-852d-c6672a7edd87 8ccf8f4eb381e7fd751d80d70779a9c0 {"aliquot_tag": "ALQ_fae279da", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03965.miRNA-Seq.T.hg38 C3L-03965 LSCC miRNA-Seq tumor CPT0207210009 54ccb2b4-ba4f-4f72-b55b-d122ff139f77_mirnaseq_gdc_realn.bam 227858141 BAM harmonized CPTAC3 7d37423f-cea8-4e92-98a3-1cff3a3834f6 02e53bd8eac59db7e29fc162e9df7d0c {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor"} -C3L-03965.RNA-Seq.chimeric.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.chimeric.gdc_realn.bam 220660573 BAM chimeric harmonized CPTAC3 55af1dab-b045-4e05-af3a-be3d301ad133 ffd147378aaab458173649d1d849b442 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.RNA-Seq.chimeric.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.chimeric.gdc_realn.bam 159966732 BAM chimeric harmonized CPTAC3 e8da0699-6c2a-4c84-aaf9-8c78938ee85c ddedc5cecdee8593257a1a7945aad3e8 {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor"} -C3L-03965.RNA-Seq.genomic.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.genomic.gdc_realn.bam 8783869147 BAM genomic harmonized CPTAC3 329d6ffe-e0f5-41d0-90c5-64adfd00ef0f 85a9707673402cfa2bbb4f9f22193c65 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.RNA-Seq.genomic.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.genomic.gdc_realn.bam 10420358928 BAM genomic harmonized CPTAC3 35b53149-cd29-4ea8-b56a-260343450918 bd35c0d850a6e809e00190b4c08b3b50 {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor"} -C3L-03965.RNA-Seq.S17_L005_R1.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 4157303846 FASTQ S17_L005_R1 unaligned CPTAC3 0e317482-0734-4b81-939d-cf634149f0c8 f4bae6371bc7ef4297ecef30d1b0d2a6 {"aliquot_tag": "ALQ_9fddc28b", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.RNA-Seq.S17_L005_R2.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 4554290894 FASTQ S17_L005_R2 unaligned CPTAC3 60d87417-4be8-454b-947d-650fe39b2ef0 4aae7402b802d716b0e449ad0d48cd0a {"aliquot_tag": "ALQ_9fddc28b", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.RNA-Seq.S7_L002_R1.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R1_001.fastq.gz 4793695484 FASTQ S7_L002_R1 unaligned CPTAC3 6fcd290a-cc70-40ce-bc63-4730ea7939c9 39f7409c75ea08dddfb08f2446400573 {"aliquot_tag": "ALQ_fae279da", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03965.RNA-Seq.S7_L002_R2.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R2_001.fastq.gz 5153429353 FASTQ S7_L002_R2 unaligned CPTAC3 b5998c3a-c80b-4fad-b796-6edc3f14ca16 3bdb433aa0254531b4b3ebb66f4c37cf {"aliquot_tag": "ALQ_fae279da", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03965.RNA-Seq.transcriptome.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.transcriptome.gdc_realn.bam 9427404932 BAM transcriptome harmonized CPTAC3 8d263302-132a-47ee-a7ce-6aa88d74ec27 7fc7e1156971e6d5a509e7696bf75539 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.RNA-Seq.transcriptome.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.transcriptome.gdc_realn.bam 12514526693 BAM transcriptome harmonized CPTAC3 4fddea50-e733-4488-8402-9d66cd91c14c 8807e91ffddc0fbd51d07d3bd1fff9bb {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor"} -C3L-03965.WGS.N C3L-03965 LSCC WGS blood_normal CPT0207360002 CPT0207360002.WholeGenome.RP-1303.bam 60833619609 BAM aligned CPTAC3 b0c60e5c-a492-48bd-b9a6-6a5934f852a7 0e7bed5a10a3eee8da46d40c6db4a7b8 {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03965.WGS.N.hg38 C3L-03965 LSCC WGS blood_normal CPT0207360002 9b912644-c500-4133-a97b-215ecd2c4688_wgs_gdc_realn.bam 90428975998 BAM harmonized CPTAC3 d4473ede-affb-4d91-a124-be84b540a9b4 35f0f984343c97ebac417905e3706f29 {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03965.WGS.T C3L-03965 LSCC WGS tumor CPT0207210006 CPT0207210006.WholeGenome.RP-1303.bam 66019381991 BAM aligned CPTAC3 b388a513-43f3-402d-b31d-4398a630cf68 79facc0322f7faa6146aab1e685219a7 {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor"} -C3L-03965.WGS.T.hg38 C3L-03965 LSCC WGS tumor CPT0207210006 2e89777b-80db-4682-8fd6-a3e5e2263f36_wgs_gdc_realn.bam 100040345060 BAM harmonized CPTAC3 9b510852-fab6-4526-8f7b-7b588f18c8a6 e7ac01a95f070c17eedf7da0b6158a2a {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor"} -C3L-03965.WXS.A C3L-03965 LSCC WXS tissue_normal CPT0207250009 CPT0207250009.WholeExome.RP-1303.bam 21396904136 BAM aligned CPTAC3 3d1ea900-822d-497f-bbf2-a464609c3fce e3797868fab473bc57a070c9c8e21d79 {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.WXS.A.hg38 C3L-03965 LSCC WXS tissue_normal CPT0207250009 f15a3b95-959d-4361-9773-a8cd9b214cc9_wxs_gdc_realn.bam 29383316981 BAM harmonized CPTAC3 228f09a7-72e8-45db-9502-594eebf6172f 99cd54353324f54b822cb28fdb3eb020 {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03965.WXS.N C3L-03965 LSCC WXS blood_normal CPT0207360002 CPT0207360002.WholeExome.RP-1303.bam 38599064047 BAM aligned CPTAC3 8cfcd686-0038-4ccc-a5b3-31ce4cf89cde 4dbe17dcf2e92e8d13e0b326d61b73a5 {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03965.WXS.N.hg38 C3L-03965 LSCC WXS blood_normal CPT0207360002 9b912644-c500-4133-a97b-215ecd2c4688_wxs_gdc_realn.bam 52992469744 BAM harmonized CPTAC3 1b195337-628b-4637-9c1d-f36d99df8e98 f41b517ad111701ef0b8fe321728453e {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal"} -C3L-03965.WXS.T C3L-03965 LSCC WXS tumor CPT0207210006 CPT0207210006.WholeExome.RP-1303.bam 23195827417 BAM aligned CPTAC3 5ccbe3b8-a644-4af9-87dd-f2fcd7d63ea7 a409f96ae28ac07356780d85f46a55fb {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor"} -C3L-03965.WXS.T.hg38 C3L-03965 LSCC WXS tumor CPT0207210006 2e89777b-80db-4682-8fd6-a3e5e2263f36_wxs_gdc_realn.bam 31695767059 BAM harmonized CPTAC3 895e5823-7469-4c9c-b6ef-a0dd36248635 1a7850559cba878bc6dc2dd71c989b31 {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor"} -C3L-03968.MethArray.Green.T C3L-03968 GBM Methylation_Array tumor CPT0228220006 203219650003_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 48a3b07d-67b6-46d3-aa8e-4ee88fbeba21 284c69845d597d4ca6af6a0eb1e7e4d8 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor"} -C3L-03968.MethArray.Red.T C3L-03968 GBM Methylation_Array tumor CPT0228220006 203219650003_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 ed11a706-262f-46a8-80bd-d39d28c2713c de8d05d0614ba64d47dbe46a55420762 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor"} -C3L-03968.miRNA-Seq.S23_L003_R1.T C3L-03968 GBM miRNA-Seq tumor CPT0228220009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAAAAG_S23_L003_R1_001.unaln.bam 191661159 BAM S23_L003_R1 unaligned CPTAC3 e3671f7f-9a15-41b7-af21-8b1b50181e24 6184679f52a95c994889ecfc54fe9673 {"aliquot_tag": "ALQ_92f749e", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03968.miRNA-Seq.T.hg38 C3L-03968 GBM miRNA-Seq tumor CPT0228220009 1d6001d1-2404-405a-8db0-034f92eac251_mirnaseq_gdc_realn.bam 213955050 BAM harmonized CPTAC3 8735fa9f-4346-400c-a03c-363d930400ee aa0d8312ce1cb1d453ee42582b4fe9f2 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor"} -C3L-03968.RNA-Seq.chimeric.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.chimeric.gdc_realn.bam 88975592 BAM chimeric harmonized CPTAC3 f7b9c081-20fd-4a76-949d-133b0d6b5d76 1ecbf3f1680dfb960a300e991e6916d2 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor"} -C3L-03968.RNA-Seq.genomic.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.genomic.gdc_realn.bam 10165814453 BAM genomic harmonized CPTAC3 5d9c6d5d-2afd-42f2-91da-d6a763125634 56fe62c726c0eecf522244100f02a991 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor"} -C3L-03968.RNA-Seq.S12_L008_R1.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R1_001.fastq.gz 4636196096 FASTQ S12_L008_R1 unaligned CPTAC3 b6017d4a-a185-48b3-be09-6924aebbd163 8903ee3b1ed5b552cd66ca11165ea149 {"aliquot_tag": "ALQ_92f749e", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03968.RNA-Seq.S12_L008_R2.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R2_001.fastq.gz 4944644409 FASTQ S12_L008_R2 unaligned CPTAC3 caa46304-d90c-4d2f-b172-b917ea44d003 a2da5dd50e0722ea635db8f901eec369 {"aliquot_tag": "ALQ_92f749e", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03968.RNA-Seq.transcriptome.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.transcriptome.gdc_realn.bam 9695661736 BAM transcriptome harmonized CPTAC3 6ce14bae-b965-4554-a85b-cc38ec4891de ddb2d00c583d32918a224255f9694421 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor"} -C3L-03968.scRNA-Seq.S5_L003_R1.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R1_001.fastq.gz 12332046890 FASTQ S5_L003_R1 unaligned CPTAC3 fde2e78c-2330-4e10-ac7b-f405d95d1a9c 252ef1d82c3093686468a861096ec187 {"aliquot_tag": "ALQ_779e0823", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03968.scRNA-Seq.S5_L003_R2.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R2_001.fastq.gz 27268492073 FASTQ S5_L003_R2 unaligned CPTAC3 69a226f6-99ba-4783-a417-7cd596be4868 256d74984b78ed853d6156bde8b0370b {"aliquot_tag": "ALQ_779e0823", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03968.scRNA-Seq.T.hg38 C3L-03968 GBM scRNA-Seq tumor CPT0228220004 possorted_genome_bam.bam 31087850916 BAM harmonized CPTAC3 514aacd9-b0dd-47c1-b49f-3a66ca04ea13 62f12b60d0ff5f5d338b504a01628b6e {"aliquot_tag": "ALQ_779e0823", "gdc_sample_type": "Primary Tumor"} -C3L-03968.WGS.N C3L-03968 GBM WGS blood_normal CPT0228320002 CPT0228320002.WholeGenome.RP-1303.bam 51775732268 BAM aligned CPTAC3 9efb45b1-b5e0-48b5-86cb-660f2dafa2e8 fdb0574beba867ef5bd393d022e8e39a {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03968.WGS.N.hg38 C3L-03968 GBM WGS blood_normal CPT0228320002 8b735522-06d1-4074-adb7-0f326c2842b4_wgs_gdc_realn.bam 75690377017 BAM harmonized CPTAC3 1b49821e-bb58-4201-ae96-cb252e209018 3909b91bab18b2699192b8bfc54729c0 {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03968.WGS.T C3L-03968 GBM WGS tumor CPT0228220006 CPT0228220006.WholeGenome.RP-1303.bam 61251194504 BAM aligned CPTAC3 8caecb2c-3677-4732-9297-62c2e37d5ff3 a972678f5ae88be3c8e7952fbb2d693f {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor"} -C3L-03968.WGS.T.hg38 C3L-03968 GBM WGS tumor CPT0228220006 9616e8d2-5da6-4585-877b-be3056794e29_wgs_gdc_realn.bam 88956331568 BAM harmonized CPTAC3 150b83ed-69d5-4474-b11c-d3def690a707 c89ed2a350a148ee74890838f82ce23e {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor"} -C3L-03968.WXS.N C3L-03968 GBM WXS blood_normal CPT0228320002 CPT0228320002.WholeExome.RP-1303.bam 25548039141 BAM aligned CPTAC3 ace4bb1f-f3a7-4ad4-a78b-ee6336a220ff db0c8d4b6fac634d0e80b03250435dcd {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03968.WXS.N.hg38 C3L-03968 GBM WXS blood_normal CPT0228320002 8b735522-06d1-4074-adb7-0f326c2842b4_wxs_gdc_realn.bam 35010752097 BAM harmonized CPTAC3 b8b7a741-d303-4b90-a138-639e9f89cede d5852f8eb9c20b3542815806c98e79d7 {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-03968.WXS.T C3L-03968 GBM WXS tumor CPT0228220006 CPT0228220006.WholeExome.RP-1303.bam 27157559453 BAM aligned CPTAC3 117ba2db-8177-4f3a-9f0f-1512fbcf3ac5 57294f572991669842ed1c2ad3ba2ed4 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor"} -C3L-03968.WXS.T.hg38 C3L-03968 GBM WXS tumor CPT0228220006 9616e8d2-5da6-4585-877b-be3056794e29_wxs_gdc_realn.bam 38241565674 BAM harmonized CPTAC3 09e2eaca-e541-4762-bbb5-5acfcf3a6f99 98c391a040e7ca1b88dbd181d1637d74 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor"} -C3L-03969.MethArray.Green.A C3L-03969 LUAD Methylation_Array tissue_normal CPT0229390010 203561620162_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5769edd8-0ba9-4ab2-886b-c533c6c7e00a 7f0b6bba4b0e68a0194525558cfc8502 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.MethArray.Green.T C3L-03969 LUAD Methylation_Array tumor CPT0229360007 203561450023_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 e3ebf615-75d8-461d-83e9-c1c88c2bfbd8 86231e0c69e132249cfa58db4eb7b5ec {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor"} -C3L-03969.MethArray.Red.A C3L-03969 LUAD Methylation_Array tissue_normal CPT0229390010 203561620162_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 8256ac81-5648-42f2-871b-38347dc460d3 d85bb451925a766b47a9376b693df304 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.MethArray.Red.T C3L-03969 LUAD Methylation_Array tumor CPT0229360007 203561450023_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9e737061-8c88-4194-8982-71b81b274fdf d6673f38a1ee21df3cd53b3f4515bbeb {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor"} -C3L-03969.miRNA-Seq.A.hg38 C3L-03969 LUAD miRNA-Seq tissue_normal CPT0229390007 0858f76b-0e40-463c-a9a9-cfb7a0560939_mirnaseq_gdc_realn.bam 201013123 BAM harmonized CPTAC3 83d4b3db-39d9-4f0c-89c7-9ba2cf087b15 a87fecb8572a1741a94820e9a4b7cabd {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.miRNA-Seq.S17_L007_R1.A C3L-03969 LUAD miRNA-Seq tissue_normal CPT0229390007 190722_UNC31-K00269_0234_AH7VGTBBXY_GTTTCG_S17_L007_R1_001.unaln.bam 176718051 BAM S17_L007_R1 unaligned CPTAC3 36ab8c32-d80d-4eab-9632-7d5129507fcf 2d0e83311a536715f92812a1222719d7 {"aliquot_tag": "ALQ_f46cb099", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.miRNA-Seq.S29_L004_R1.T C3L-03969 LUAD miRNA-Seq tumor CPT0229360010 190722_UNC31-K00269_0234_AH7VGTBBXY_CATTTT_S29_L004_R1_001.unaln.bam 226589942 BAM S29_L004_R1 unaligned CPTAC3 fa109316-8c4c-401d-9e56-6879ff954e0a b7f98322c83d4a75a054580507d3a562 {"aliquot_tag": "ALQ_f14383aa", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03969.miRNA-Seq.T.hg38 C3L-03969 LUAD miRNA-Seq tumor CPT0229360010 c90298f6-24c8-4130-bcea-4e65a6886c29_mirnaseq_gdc_realn.bam 248197645 BAM harmonized CPTAC3 5a282886-b90b-48d9-8034-8e6ad8d0f3e2 d4f6b0ee253bb81aff98fe2c0f963208 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor"} -C3L-03969.RNA-Seq.chimeric.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.chimeric.gdc_realn.bam 25708444 BAM chimeric harmonized CPTAC3 68b58a5f-809b-40f3-b092-0ab7cc630cf2 a878016d727d3393c4f66eaf51feec3f {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.RNA-Seq.chimeric.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.chimeric.gdc_realn.bam 32681755 BAM chimeric harmonized CPTAC3 b10f7d8a-16c1-45d5-8ed1-cc88f3953316 e3d9780da13e330f23aaa10aea74bc15 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor"} -C3L-03969.RNA-Seq.genomic.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.genomic.gdc_realn.bam 11010451280 BAM genomic harmonized CPTAC3 efca4d59-387f-42ac-86f0-1598c653b44a f96ae5b4a9b6f52eb3d40b669cb9d2fd {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.RNA-Seq.genomic.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.genomic.gdc_realn.bam 11721090046 BAM genomic harmonized CPTAC3 72edf8b4-a14d-42b1-9dc9-401fbed9bdf7 9db54b9d524b29043e4e85e9807a12e2 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor"} -C3L-03969.RNA-Seq.S21_L006_R1.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R1_001.fastq.gz 3781375419 FASTQ S21_L006_R1 unaligned CPTAC3 43507f31-8ecf-4b74-b825-91d2d500e1c8 c63e638c315c3f693130cb7e9159f4f6 {"aliquot_tag": "ALQ_f14383aa", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03969.RNA-Seq.S21_L006_R2.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R2_001.fastq.gz 4218090532 FASTQ S21_L006_R2 unaligned CPTAC3 c756d39b-ac1c-4507-b3e5-e2ebfcd2b568 fceb72d7cd5210b8d0e447b527330ad6 {"aliquot_tag": "ALQ_f14383aa", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03969.RNA-Seq.S27_L007_R1.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R1_001.fastq.gz 3773757903 FASTQ S27_L007_R1 unaligned CPTAC3 8a354b39-5529-48f4-96a9-4d98d5bd3158 a64fe6b2a0fe835e36528218ad1c471e {"aliquot_tag": "ALQ_f46cb099", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.RNA-Seq.S27_L007_R2.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R2_001.fastq.gz 4112110859 FASTQ S27_L007_R2 unaligned CPTAC3 0592d378-f99e-40d6-814e-0d8a72167e96 0600ebb1666d6f0acb49fe7deafdb6d7 {"aliquot_tag": "ALQ_f46cb099", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.RNA-Seq.transcriptome.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.transcriptome.gdc_realn.bam 7503136161 BAM transcriptome harmonized CPTAC3 239af458-d2dd-43b5-ada0-598e5a212b07 1726b856ad8b2c9ca4eb782ba0b1d7d4 {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.RNA-Seq.transcriptome.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.transcriptome.gdc_realn.bam 7992063542 BAM transcriptome harmonized CPTAC3 018fc022-06c2-49ae-9ed3-101e1077bb19 33011fd7db38be99e78283440abf4380 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor"} -C3L-03969.WGS.N C3L-03969 LUAD WGS blood_normal CPT0229500002 CPT0229500002.WholeGenome.RP-1303.bam 67687380228 BAM aligned CPTAC3 90cb5a5a-cdda-4966-976c-a106ed80c4fe 3583bd00c3bd46c62596f5821ceb41dc {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal"} -C3L-03969.WGS.N.hg38 C3L-03969 LUAD WGS blood_normal CPT0229500002 011bdc0d-8bf8-40eb-93eb-b45db054f7de_wgs_gdc_realn.bam 98596122288 BAM harmonized CPTAC3 08b27748-8515-4dca-bc85-ed1857151e25 3e7e5ccdae163f48ffe748a43d84162d {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal"} -C3L-03969.WGS.T C3L-03969 LUAD WGS tumor CPT0229360007 CPT0229360007.WholeGenome.RP-1303.bam 74136999101 BAM aligned CPTAC3 15b0b926-51da-4193-8fc5-3d096d2a24a0 c73979366c061d7fa77a6147100280d8 {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor"} -C3L-03969.WGS.T.hg38 C3L-03969 LUAD WGS tumor CPT0229360007 71c06a19-995c-4bcd-8e52-5e44228e1155_wgs_gdc_realn.bam 109976181956 BAM harmonized CPTAC3 8cc66889-df53-445d-9c34-7f4d0385d129 ea21de04b3d61dfd347c36dcf83fecdf {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor"} -C3L-03969.WXS.A C3L-03969 LUAD WXS tissue_normal CPT0229390010 CPT0229390010.WholeExome.RP-1303.bam 25835207507 BAM aligned CPTAC3 437aa3e7-397f-4bdf-947e-98c9cc1b5efc 7ce38fc8cd6cc00b994a06d58a0840c6 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.WXS.A.hg38 C3L-03969 LUAD WXS tissue_normal CPT0229390010 998bb1d8-0288-4c9f-9e01-8ca945a39964_wxs_gdc_realn.bam 35531503312 BAM harmonized CPTAC3 abc7dc15-dcc8-4710-bd57-23105c7dc902 750d282285922f6b989d676da95f24a6 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03969.WXS.N C3L-03969 LUAD WXS blood_normal CPT0229500002 CPT0229500002.WholeExome.RP-1303.bam 24991189138 BAM aligned CPTAC3 b1ae9f66-fc9c-45f2-b618-d8dcadf69837 a128002d0afba71b45e344485204687e {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal"} -C3L-03969.WXS.N.hg38 C3L-03969 LUAD WXS blood_normal CPT0229500002 011bdc0d-8bf8-40eb-93eb-b45db054f7de_wxs_gdc_realn.bam 34382710947 BAM harmonized CPTAC3 a403cc1f-05da-41a6-abd2-d963b7c5c058 c1aa029ec79031eeb42a7b4931951264 {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal"} -C3L-03969.WXS.T C3L-03969 LUAD WXS tumor CPT0229360007 CPT0229360007.WholeExome.RP-1303.bam 24356854446 BAM aligned CPTAC3 783723f1-2500-479a-aa41-f96c10efb299 e4d3498cb9f781571dd143a5b618e9d4 {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor"} -C3L-03969.WXS.T.hg38 C3L-03969 LUAD WXS tumor CPT0229360007 71c06a19-995c-4bcd-8e52-5e44228e1155_wxs_gdc_realn.bam 33840135232 BAM harmonized CPTAC3 ad78aab7-83a1-4577-9f60-a533aeed6913 b1e55b67569393b293079d2b333ef438 {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor"} -C3L-03976.MethArray.Green.A C3L-03976 LUAD Methylation_Array tissue_normal CPT0231930006 203561620053_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 11c412f2-6ea0-4353-aeb1-e618e62e976c 76c389b789a95fcc220495567a22122b {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.MethArray.Green.T C3L-03976 LUAD Methylation_Array tumor CPT0231920006 203561620089_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 89b3f931-b954-4dcd-a7cb-8698f0d63b8d 51e7a01b63f9cf6d324c8c2a8c20e6e9 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor"} -C3L-03976.MethArray.Red.A C3L-03976 LUAD Methylation_Array tissue_normal CPT0231930006 203561620053_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 6851565a-0abf-4506-ad60-418dd291d405 f1b240cfa6afe7fc21f23d1276323732 {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.MethArray.Red.T C3L-03976 LUAD Methylation_Array tumor CPT0231920006 203561620089_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a2f2e4d5-c712-4269-8008-3ae0b9d9f08a 4ce794a3509d018982cb4ab1f6de32c3 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor"} -C3L-03976.miRNA-Seq.A.hg38 C3L-03976 LUAD miRNA-Seq tissue_normal CPT0231930009 392db083-3055-4daf-a861-0546a970291e_mirnaseq_gdc_realn.bam 224997999 BAM harmonized CPTAC3 9d93db0d-8acb-4f87-93b5-f05b256ce18e 911b3f8bbb24a7361eafd22b931444b1 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.miRNA-Seq.S1_L005_R1.A C3L-03976 LUAD miRNA-Seq tissue_normal CPT0231930009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACAGTG_S1_L005_R1_001.unaln.bam 199990331 BAM S1_L005_R1 unaligned CPTAC3 d58f99ec-2ec0-4a58-a5f8-890dee4db5f9 31e91c1a9a9923200ab8f53f9972a517 {"aliquot_tag": "ALQ_7bae8a0", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.miRNA-Seq.S32_L004_R1.T C3L-03976 LUAD miRNA-Seq tumor CPT0231920009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTATAC_S32_L004_R1_001.unaln.bam 211252261 BAM S32_L004_R1 unaligned CPTAC3 fa7c67f7-8bfa-44f9-9980-e6fe14a2ecad d0f127c8ccfbe3deeff8fb3b10715b8e {"aliquot_tag": "ALQ_3adac110", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03976.miRNA-Seq.T.hg38 C3L-03976 LUAD miRNA-Seq tumor CPT0231920009 f560c5ae-9c42-454e-8c99-577718cb00ac_mirnaseq_gdc_realn.bam 233700633 BAM harmonized CPTAC3 2a275a8c-7663-4067-bc08-dd201c6c14e3 d228c4bc23a9eccf77f3e3fe82254d0c {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor"} -C3L-03976.RNA-Seq.chimeric.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.chimeric.gdc_realn.bam 35754791 BAM chimeric harmonized CPTAC3 2a133700-629f-4f74-8b6b-305dde613def dacca239f8563beabfbb9fff5ade8959 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.RNA-Seq.chimeric.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.chimeric.gdc_realn.bam 32508139 BAM chimeric harmonized CPTAC3 7f47644c-3fcb-419d-a9f3-4890e904be2f a19c8ec825f51a5dc0306d223979f9e8 {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor"} -C3L-03976.RNA-Seq.genomic.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.genomic.gdc_realn.bam 11111334841 BAM genomic harmonized CPTAC3 71c39737-deb4-48f9-aec3-f56b2a010f2e 550dd6d3e4ec89b6410ac0352d8f32b0 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.RNA-Seq.genomic.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.genomic.gdc_realn.bam 10750357681 BAM genomic harmonized CPTAC3 3072f939-f729-464e-8282-4ab9b1d4cfe5 0b6a414160b65fbbe1aeffdeedd63fb8 {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor"} -C3L-03976.RNA-Seq.S17_L005_R1.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R1_001.fastq.gz 3828312219 FASTQ S17_L005_R1 unaligned CPTAC3 ffae055a-9b9e-47be-9ea6-6cbfd63919be aa74659c022a151e3f2e5b0d74497573 {"aliquot_tag": "ALQ_3adac110", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03976.RNA-Seq.S17_L005_R2.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R2_001.fastq.gz 4413490184 FASTQ S17_L005_R2 unaligned CPTAC3 77578ee6-a648-467c-8f69-d57393a72d1e 3e452f523fad84c7cc2e096b62a25cb3 {"aliquot_tag": "ALQ_3adac110", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03976.RNA-Seq.S19_L005_R1.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R1_001.fastq.gz 3626997230 FASTQ S19_L005_R1 unaligned CPTAC3 d02ddc2c-97bf-4e44-acb4-66a4977e8f8e 3752941a47e770bc8b93e8a166ad41d1 {"aliquot_tag": "ALQ_7bae8a0", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.RNA-Seq.S19_L005_R2.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R2_001.fastq.gz 4123451902 FASTQ S19_L005_R2 unaligned CPTAC3 b164eeb6-6729-4436-96bd-a46b0f411f1c 6f7f573fed4acc939284e07a0da72b16 {"aliquot_tag": "ALQ_7bae8a0", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.RNA-Seq.transcriptome.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.transcriptome.gdc_realn.bam 7714482059 BAM transcriptome harmonized CPTAC3 46bb9ea0-06a4-44c7-89f7-96159167685d e035bc60cf3a3052139416ac831eae72 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.RNA-Seq.transcriptome.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.transcriptome.gdc_realn.bam 9104772852 BAM transcriptome harmonized CPTAC3 7c0fff85-be9b-42a8-aa6c-bf47a2d515e2 63ada731b3704d319c26af0e7f7772cc {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor"} -C3L-03976.WGS.N C3L-03976 LUAD WGS blood_normal CPT0232040002 CPT0232040002.WholeGenome.RP-1303.bam 77786005294 BAM aligned CPTAC3 99f0ef7b-948a-4b34-b79d-2d4f7d9b42a1 2f2d94f15a8aa2fb6d169949b2487f68 {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal"} -C3L-03976.WGS.N.hg38 C3L-03976 LUAD WGS blood_normal CPT0232040002 8a234209-d16c-4a7e-8375-70d06e443c9a_wgs_gdc_realn.bam 112790953963 BAM harmonized CPTAC3 3bb202a0-5bef-4e77-87d4-ba6ddd84c38d ad69082250fb8802d575e821ba317ace {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal"} -C3L-03976.WGS.T C3L-03976 LUAD WGS tumor CPT0231920006 CPT0231920006.WholeGenome.RP-1303.bam 80585241008 BAM aligned CPTAC3 07c4b6e8-c190-4d5f-98e4-3f4b999b0387 aeea1484b26f168ea85cbbbc263abe00 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor"} -C3L-03976.WGS.T.hg38 C3L-03976 LUAD WGS tumor CPT0231920006 78bdd4ee-0128-4b45-bca7-dfc92a9cacf1_wgs_gdc_realn.bam 116072282359 BAM harmonized CPTAC3 e35fc319-46d8-41db-af1e-0b2d5948aa77 7ba0636d4e75286dafcc6f3ff91f1620 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor"} -C3L-03976.WXS.A C3L-03976 LUAD WXS tissue_normal CPT0231930006 CPT0231930006.WholeExome.RP-1303.bam 19706083571 BAM aligned CPTAC3 f26316ff-7930-430c-bc84-12b6136f5851 55aed94bf587999d4763a04a95cf6005 {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.WXS.A.hg38 C3L-03976 LUAD WXS tissue_normal CPT0231930006 61ed3db7-d43f-41f1-84ea-282c7c49375c_wxs_gdc_realn.bam 27407383282 BAM harmonized CPTAC3 e543560d-d510-4b93-a185-fd342377609e d542fb5c5724555973927eb1a1fad9d0 {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03976.WXS.N C3L-03976 LUAD WXS blood_normal CPT0232040002 CPT0232040002.WholeExome.RP-1303.bam 28973460680 BAM aligned CPTAC3 e95a89b9-270e-42bf-a71e-35492fa19440 776aa34f4fa9a3758db7d0710e69626d {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal"} -C3L-03976.WXS.N.hg38 C3L-03976 LUAD WXS blood_normal CPT0232040002 8a234209-d16c-4a7e-8375-70d06e443c9a_wxs_gdc_realn.bam 39810194181 BAM harmonized CPTAC3 068c9af6-50cb-41b2-a2d9-0b32c030a383 e8ad82968a3a12d6cbcc59c57ff56d4d {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal"} -C3L-03976.WXS.T C3L-03976 LUAD WXS tumor CPT0231920006 CPT0231920006.WholeExome.RP-1303.bam 20856425377 BAM aligned CPTAC3 13e6d958-9a93-4dee-a24b-500e85b902cb 0da6a73e3e986d2e591dd59b893be1a1 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor"} -C3L-03976.WXS.T.hg38 C3L-03976 LUAD WXS tumor CPT0231920006 78bdd4ee-0128-4b45-bca7-dfc92a9cacf1_wxs_gdc_realn.bam 28503384184 BAM harmonized CPTAC3 a912430f-de07-4968-a2cd-b3fe9299d17f 320944823d0e14cdc6e0c754fa294f72 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor"} -C3L-03982.MethArray.Green.A C3L-03982 LSCC Methylation_Array tissue_normal CPT0258510006 204367490093_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 529b3837-7279-422e-9996-9db14ff44039 4b70be6cc1d0da3e4382010cb8b6bda7 {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.MethArray.Green.T C3L-03982 LSCC Methylation_Array tumor CPT0258440007 204367470124_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 9d0c3cda-2009-4533-9915-79dd02146976 667b8569515ebd48c03f6763100ac834 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor"} -C3L-03982.MethArray.Red.A C3L-03982 LSCC Methylation_Array tissue_normal CPT0258510006 204367490093_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 b7b5e27d-39a2-425d-a92b-7f72ad01208b 16ebb28a9c296503fa7e1bcfaebf283a {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.MethArray.Red.T C3L-03982 LSCC Methylation_Array tumor CPT0258440007 204367470124_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 e8d3c3f3-700d-4a6f-8418-4882ef1a3b3f c4463631acc35387ae49b76e0977e647 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor"} -C3L-03982.miRNA-Seq.A.hg38 C3L-03982 LSCC miRNA-Seq tissue_normal CPT0258510009 fddc16a9-3efb-4422-9feb-eb5988f76ebc_mirnaseq_gdc_realn.bam 257426342 BAM harmonized CPTAC3 e357b633-bf49-461f-9747-351db7c6a970 f5a5316820e1e2f2a1142279ee79baf8 {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.miRNA-Seq.S13_L001_R1.T C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 200526_UNC32-K00270_0248_BHH7WFBBXY_GATCAG_S13_L001_R1_001.unaln.bam 189193316 BAM S13_L001_R1 unaligned CPTAC3 7332a096-ea3b-4d4c-8bbf-7c4a1c066b3a 24787eba626532af29bd2cbcd01fe12d {"aliquot_tag": "ALQ_3a34e2df", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03982.miRNA-Seq.S13_L007_R1.A C3L-03982 LSCC miRNA-Seq tissue_normal CPT0258510009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GATCAG_S13_L007_R1_001.unaln.bam 233471124 BAM S13_L007_R1 unaligned CPTAC3 f5d3fadd-adc5-4ea6-9028-3d18edb2c248 38dada1b8043727e577ce29f2bd3c363 {"aliquot_tag": "ALQ_594f37ef", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.miRNA-Seq.S9_L006_R1.T C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 200224_UNC31-K00269_0267_AHC722BBXY_GATCAG_S9_L006_R1_001.unaln.bam 203350495 BAM S9_L006_R1 unaligned CPTAC3 ecad22b1-cd2d-4bb8-9c0c-8a3ce65094b1 c3d8f323122c7c5294c2eb746031c74d {"aliquot_tag": "ALQ_3a34e2df", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03982.miRNA-Seq.T.hg38 C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 4465468e-ddcc-46b0-87d7-c0ac04982740_mirnaseq_gdc_realn.bam 431849346 BAM harmonized CPTAC3 2c86a893-bf62-4f57-b09a-fa32a3a325fc b79fd595485fdd38279abe5739c57840 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor"} -C3L-03982.RNA-Seq.chimeric.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.chimeric.gdc_realn.bam 84597980 BAM chimeric harmonized CPTAC3 e52c2b2c-2076-42f4-ae36-be6d2d9d1f77 ea4fbffe52e1ba8948aaca3cee1ec504 {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.RNA-Seq.chimeric.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.chimeric.gdc_realn.bam 84359473 BAM chimeric harmonized CPTAC3 36f97a15-26a4-4acc-a022-db6cd74e77ad 176173ec52a75620876156b1bc772fc3 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor"} -C3L-03982.RNA-Seq.genomic.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.genomic.gdc_realn.bam 9191341732 BAM genomic harmonized CPTAC3 53358b70-1402-49aa-ac8d-4894d4ee1548 6c900d843295ca112cd052a8033d7728 {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.RNA-Seq.genomic.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.genomic.gdc_realn.bam 8208033794 BAM genomic harmonized CPTAC3 6370580c-0281-48f7-bec9-b7954b8259d8 cd71febf5ef66eaf9a6d6e5dd2920a96 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor"} -C3L-03982.RNA-Seq.S12_L003_R1.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R1_001.fastq.gz 4454069276 FASTQ S12_L003_R1 unaligned CPTAC3 b7c4f99d-2a4c-4653-b15d-48e37b8a0288 52f55dcd3068a4daf1289d476a4e37db {"aliquot_tag": "ALQ_594f37ef", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.RNA-Seq.S12_L003_R2.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R2_001.fastq.gz 5026528246 FASTQ S12_L003_R2 unaligned CPTAC3 22b21306-98f0-4942-a137-1bc414a5a355 e0e45e9b46f27d11b4002c9f78d67b59 {"aliquot_tag": "ALQ_594f37ef", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.RNA-Seq.S25_L007_R1.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R1_001.fastq.gz 3892919040 FASTQ S25_L007_R1 unaligned CPTAC3 6d360c80-2b51-40ad-8bf9-de80d1e6ba76 0f5ad61e54dca3101623d495962e3b56 {"aliquot_tag": "ALQ_3a34e2df", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03982.RNA-Seq.S25_L007_R2.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R2_001.fastq.gz 4189513819 FASTQ S25_L007_R2 unaligned CPTAC3 108bc5a0-64b9-4b7a-be84-884cc5f5e7fe e93cd0b5ce11ac8873e1b712f1895f20 {"aliquot_tag": "ALQ_3a34e2df", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03982.RNA-Seq.transcriptome.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.transcriptome.gdc_realn.bam 11486185853 BAM transcriptome harmonized CPTAC3 3eb5b6ac-f7af-4da4-8f88-7f02ab43212d 8067964601f9eeefd3e8118f89fa071e {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.RNA-Seq.transcriptome.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.transcriptome.gdc_realn.bam 9103820075 BAM transcriptome harmonized CPTAC3 1650337d-8576-4e22-b885-1456d0f5a1c6 4ca699bb4511cbce3172bc0bf438b9f3 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor"} -C3L-03982.WGS.N C3L-03982 LSCC WGS blood_normal CPT0258600002 CPT0258600002.WholeGenome.RP-2158.bam 23898985421 BAM aligned CPTAC3 3d76dc67-8732-4f2a-ac46-fd6acead75d8 771cd5c2145082e651953445fbdb0d90 {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal"} -C3L-03982.WGS.N.hg38 C3L-03982 LSCC WGS blood_normal CPT0258600002 7f608378-bf18-46f6-8c8b-9daca5743541_wgs_gdc_realn.bam 72207406429 BAM harmonized CPTAC3 a801f2d8-be1d-4543-a17c-549e5c03f77b 4afdf0020d30f0a0c178457f6e8f859a {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal"} -C3L-03982.WGS.T C3L-03982 LSCC WGS tumor CPT0258440007 CPT0258440007.WholeGenome.RP-2158.bam 26240888901 BAM aligned CPTAC3 dd633f78-e6b6-4d62-ba2b-26bac8c4ee8d fbb0f51a8ec3db2c57323fc35bbc6604 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor"} -C3L-03982.WGS.T.hg38 C3L-03982 LSCC WGS tumor CPT0258440007 562209b1-ac63-4e61-bb49-0162738073fb_wgs_gdc_realn.bam 75561253531 BAM harmonized CPTAC3 66ac0d8c-a8a1-46e0-86be-8f241588cd47 0e64c2ec50a8db945c2a249607023f28 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor"} -C3L-03982.WXS.A C3L-03982 LSCC WXS tissue_normal CPT0258510006 CPT0258510006.WholeExome.RP-1303.bam 19684837004 BAM aligned CPTAC3 dad23e8a-2ea7-4db8-b9ee-3e29ff2a7864 66faeff205973d0f510bc8c52cf22952 {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.WXS.A.hg38 C3L-03982 LSCC WXS tissue_normal CPT0258510006 e4883714-590f-424b-93aa-dcd4f2cbabd5_wxs_gdc_realn.bam 26748563048 BAM harmonized CPTAC3 08494c78-a375-407c-adab-ab45a069afd7 73dcddc7d54f8828869d598b90dcc7bf {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03982.WXS.N C3L-03982 LSCC WXS blood_normal CPT0258600002 CPT0258600002.WholeExome.RP-1303.bam 24777374607 BAM aligned CPTAC3 921d8c19-e502-45eb-b8d4-8da65ebc9b99 d3cc8100c836cf3187427268b01952a4 {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal"} -C3L-03982.WXS.N.hg38 C3L-03982 LSCC WXS blood_normal CPT0258600002 7f608378-bf18-46f6-8c8b-9daca5743541_wxs_gdc_realn.bam 33624683403 BAM harmonized CPTAC3 99f47253-36d1-42e6-b856-65e3e5021ff1 92930ac6fd3ba8ac48feca8c433dec17 {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal"} -C3L-03982.WXS.T C3L-03982 LSCC WXS tumor CPT0258440007 CPT0258440007.WholeExome.RP-1303.bam 21400925085 BAM aligned CPTAC3 d457d04b-43fb-4c8a-9e15-008b8fb38861 557c1ff45aae936bbc541ded450f57d6 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor"} -C3L-03982.WXS.T.hg38 C3L-03982 LSCC WXS tumor CPT0258440007 562209b1-ac63-4e61-bb49-0162738073fb_wxs_gdc_realn.bam 29261864840 BAM harmonized CPTAC3 350d712d-7dee-494c-82a1-dfeb066cff9e 32bab7686471d857551a1849479cd066 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor"} -C3L-03984.MethArray.Green.A C3L-03984 LUAD Methylation_Array tissue_normal CPT0242720006 203561450062_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c76808b7-7a00-4001-8ce8-7bdde6d0ae56 d4b47501ad70713a2c1235aa90863149 {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.MethArray.Green.T C3L-03984 LUAD Methylation_Array tumor CPT0242670007 203561450062_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 94e244db-ab48-4cf7-b45c-b7461095fbee 6596bf93371ffc1d86eb1cb1090e4603 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor"} -C3L-03984.MethArray.Red.A C3L-03984 LUAD Methylation_Array tissue_normal CPT0242720006 203561450062_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 52c33b5e-ae9b-4db7-8f5a-b6963c05b7c6 edafa2bde1f082994e0c3f1bc443bfad {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.MethArray.Red.T C3L-03984 LUAD Methylation_Array tumor CPT0242670007 203561450062_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 5d3a5173-6664-4d19-ac07-ebb61e144475 7867081670940698e31a626f8dac5762 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor"} -C3L-03984.miRNA-Seq.A.hg38 C3L-03984 LUAD miRNA-Seq tissue_normal CPT0242720009 e6c9b1fc-63f2-47e9-aaf7-11821e4aa16d_mirnaseq_gdc_realn.bam 230822553 BAM harmonized CPTAC3 539252d7-bba5-4797-976b-cb93aacafab0 669ec40149850bc681f55706a764a2c2 {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.miRNA-Seq.S41_L007_R1.T C3L-03984 LUAD miRNA-Seq tumor CPT0242670010 190722_UNC31-K00269_0234_AH7VGTBBXY_ATCACG_S41_L007_R1_001.unaln.bam 188211240 BAM S41_L007_R1 unaligned CPTAC3 f273cd4e-707f-49ad-ae21-d64b133c3df1 171115e5d962490f93d57a27697d3021 {"aliquot_tag": "ALQ_588666d4", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03984.miRNA-Seq.S46_L007_R1.A C3L-03984 LUAD miRNA-Seq tissue_normal CPT0242720009 190712_UNC32-K00270_0192_BH7HL3BBXY_GAGTGG_S46_L007_R1_001.unaln.bam 198411658 BAM S46_L007_R1 unaligned CPTAC3 61844e3c-3595-4206-89f1-c99b6950ed13 940506c76827a43277a587e13d05b1a5 {"aliquot_tag": "ALQ_3bfdb3e4", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.miRNA-Seq.T.hg38 C3L-03984 LUAD miRNA-Seq tumor CPT0242670010 49a2c39a-2551-4b94-8510-1d03c86a33ea_mirnaseq_gdc_realn.bam 208383199 BAM harmonized CPTAC3 87391410-7d8f-48c7-9f34-494df398852b ee97c1f2051f5edbc8f532f880124824 {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor"} -C3L-03984.RNA-Seq.chimeric.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.chimeric.gdc_realn.bam 33271643 BAM chimeric harmonized CPTAC3 13affa53-cce3-4a30-b206-907c03f93cac 8070bcd7512c7b7d2df926194ebce36e {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.RNA-Seq.chimeric.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.chimeric.gdc_realn.bam 48934657 BAM chimeric harmonized CPTAC3 313fde57-a613-49fb-8ed9-08354a3f6106 2f267f0bd55ff550213986a1f13cc4c8 {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor"} -C3L-03984.RNA-Seq.genomic.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.genomic.gdc_realn.bam 7226578047 BAM genomic harmonized CPTAC3 4a8b2560-5c73-4230-98c1-737b150b0aab 2fa9b1c479575fdcbded3f1fe5c5c937 {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.RNA-Seq.genomic.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.genomic.gdc_realn.bam 9945258468 BAM genomic harmonized CPTAC3 e6a123e8-6409-46c0-a3c2-78ad746329e7 3534086b69a7ed146debf9c83c81cd5c {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor"} -C3L-03984.RNA-Seq.S31_L008_R1.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4763611919 FASTQ S31_L008_R1 unaligned CPTAC3 0fabed7e-bbe4-4c69-983f-149ab16d89f2 706abaa59e8a5c756df58a390d0fdd1e {"aliquot_tag": "ALQ_588666d4", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03984.RNA-Seq.S31_L008_R2.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 5171983816 FASTQ S31_L008_R2 unaligned CPTAC3 2e00e27b-a33a-4614-ad29-4948341280a7 55361e40f5e077670d684c01d19fa254 {"aliquot_tag": "ALQ_588666d4", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03984.RNA-Seq.S4_L001_R1.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R1_001.fastq.gz 2931632052 FASTQ S4_L001_R1 unaligned CPTAC3 f1aa105a-4e47-4ca3-a5b2-e95de86ba8f1 29cac178cf189749df516e5e4e9107f0 {"aliquot_tag": "ALQ_3bfdb3e4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.RNA-Seq.S4_L001_R2.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R2_001.fastq.gz 3359972556 FASTQ S4_L001_R2 unaligned CPTAC3 3da66fa0-da26-4240-b0c9-432abcc2c74d 6ce3e7f13a0e3827c41e49c23e9bdad6 {"aliquot_tag": "ALQ_3bfdb3e4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.RNA-Seq.transcriptome.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.transcriptome.gdc_realn.bam 6390235601 BAM transcriptome harmonized CPTAC3 8c15c771-05b7-48ff-8bcf-347aaf9b9849 eea7192d169f4320abde15131a881204 {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.RNA-Seq.transcriptome.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.transcriptome.gdc_realn.bam 11180776254 BAM transcriptome harmonized CPTAC3 e47346fd-0f2c-4afe-b813-4a0e8dc0c947 a6ff43d508906eb2b6bfb3efc761e7ce {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor"} -C3L-03984.WGS.N C3L-03984 LUAD WGS blood_normal CPT0242830002 CPT0242830002.WholeGenome.RP-1303.bam 57814826092 BAM aligned CPTAC3 c903faa9-c3df-41c5-a0b2-57d51401c272 a3405adc4d2cec58b858cd92d6446c0c {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal"} -C3L-03984.WGS.N.hg38 C3L-03984 LUAD WGS blood_normal CPT0242830002 699d16f1-8b4b-4b48-9876-44499a56b13a_wgs_gdc_realn.bam 84479223902 BAM harmonized CPTAC3 00a2f18b-73ee-4edb-85ea-9eaabb554b8a 21ef541d43cdd512e89e5612d9a21cf3 {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal"} -C3L-03984.WGS.T C3L-03984 LUAD WGS tumor CPT0242670007 CPT0242670007.WholeGenome.RP-1303.bam 72781420557 BAM aligned CPTAC3 ce5eed28-318d-43dc-aab0-1915eef36591 3ae448dddd0d2a1734564dc954fd8e92 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor"} -C3L-03984.WGS.T.hg38 C3L-03984 LUAD WGS tumor CPT0242670007 5a5eb3fb-fcca-47bf-be8e-7431634a2361_wgs_gdc_realn.bam 105709164883 BAM harmonized CPTAC3 ad4247d2-7bf6-452f-bf98-b8e7a65aa17d 174ab7b63369f48253eebefca1ca1580 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor"} -C3L-03984.WXS.A C3L-03984 LUAD WXS tissue_normal CPT0242720006 CPT0242720006.WholeExome.RP-1303.bam 23817974125 BAM aligned CPTAC3 d846ca0d-234e-489d-92ff-1c545b088c7d dcc9a792fd81032b2f537b0c2aae8f38 {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.WXS.A.hg38 C3L-03984 LUAD WXS tissue_normal CPT0242720006 fa5b2f5f-1ecb-40e4-96a3-a3157c9969ba_wxs_gdc_realn.bam 32909130972 BAM harmonized CPTAC3 1cff923a-28e6-4244-a6da-9b6fe979ea94 35ba4d76b95c8462d160c1f9bfbf1cb9 {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03984.WXS.N C3L-03984 LUAD WXS blood_normal CPT0242830002 CPT0242830002.WholeExome.RP-1303.bam 28307582398 BAM aligned CPTAC3 85571289-b8e1-47b3-804e-d0c1f611e82f 834d324a6197bb8b92283c6436bf7f64 {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal"} -C3L-03984.WXS.N.hg38 C3L-03984 LUAD WXS blood_normal CPT0242830002 699d16f1-8b4b-4b48-9876-44499a56b13a_wxs_gdc_realn.bam 38957144817 BAM harmonized CPTAC3 c5aeb319-af76-443a-b5bb-a567c314638f c6751d011bb410344859a15e86cfc745 {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal"} -C3L-03984.WXS.T C3L-03984 LUAD WXS tumor CPT0242670007 CPT0242670007.WholeExome.RP-1303.bam 24550857261 BAM aligned CPTAC3 7fdee571-3a20-4482-b062-8e787409a52d 82aa8a32fe1511ae0d8bb889f23a62f7 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor"} -C3L-03984.WXS.T.hg38 C3L-03984 LUAD WXS tumor CPT0242670007 5a5eb3fb-fcca-47bf-be8e-7431634a2361_wxs_gdc_realn.bam 33755838720 BAM harmonized CPTAC3 872e901e-d6f0-471a-936a-561d8a8e1e3b 81d3e2d0da4cfe460699dffb5fd1aaf6 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor"} -C3L-03985.MethArray.Green.A C3L-03985 LUAD Methylation_Array tissue_normal CPT0254910007 203273630261_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 408680b9-c38b-41c7-acb0-dc54db8d2ecf 66b6c0be72d0d8d1e2d25c4760bbab31 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.MethArray.Green.T C3L-03985 LUAD Methylation_Array tumor CPT0254880007 203561450048_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bc0ca083-150f-4926-8177-3a0be4a8827e 93266d3f0d6b0bda0914af49ecc13188 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor"} -C3L-03985.MethArray.Red.A C3L-03985 LUAD Methylation_Array tissue_normal CPT0254910007 203273630261_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 99f6fe5d-c6a6-4b96-9c7a-009a017c3448 849d381df00b19bbf0fd91b9d3ab04c2 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.MethArray.Red.T C3L-03985 LUAD Methylation_Array tumor CPT0254880007 203561450048_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 b74baad4-4215-4190-b9bc-ac1914a064d5 6a6f96c19b2b289b758a544e702be30e {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor"} -C3L-03985.miRNA-Seq.A.hg38 C3L-03985 LUAD miRNA-Seq tissue_normal CPT0254910010 2fac4b37-e831-494b-aed3-25a955786190_mirnaseq_gdc_realn.bam 180897228 BAM harmonized CPTAC3 dd465527-ee64-4ba3-a81c-48c07af4699a ff8acd5a928313c51bd19595cb64a162 {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.miRNA-Seq.S35_L006_R1.A C3L-03985 LUAD miRNA-Seq tissue_normal CPT0254910010 190722_UNC31-K00269_0234_AH7VGTBBXY_TAATCG_S35_L006_R1_001.unaln.bam 161100316 BAM S35_L006_R1 unaligned CPTAC3 0233fa53-835e-4bfc-9c6f-a372a0187027 4ca986508d8b58246f69fe582bc681a3 {"aliquot_tag": "ALQ_89ea1405", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.miRNA-Seq.S43_L007_R1.T C3L-03985 LUAD miRNA-Seq tumor CPT0254880010 190722_UNC31-K00269_0234_AH7VGTBBXY_TTAGGC_S43_L007_R1_001.unaln.bam 178285923 BAM S43_L007_R1 unaligned CPTAC3 1995c4e5-0b6f-40c6-b269-5de1fd1da6ec d20cc97e7aeebdc50ef8024336e30869 {"aliquot_tag": "ALQ_4fa6a5d1", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03985.miRNA-Seq.T.hg38 C3L-03985 LUAD miRNA-Seq tumor CPT0254880010 6331c93c-43e4-44fd-91ef-e362aa6b1883_mirnaseq_gdc_realn.bam 196129874 BAM harmonized CPTAC3 c9d00c12-0087-4830-b9d4-25417fbd9de1 23a1f8fab79b562d09a8b118843d136b {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor"} -C3L-03985.RNA-Seq.chimeric.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.chimeric.gdc_realn.bam 28231823 BAM chimeric harmonized CPTAC3 070f0e63-696e-443d-99ab-dee313947358 0190e6a7d47674ab62c30dd67f2d2dd3 {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.RNA-Seq.chimeric.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.chimeric.gdc_realn.bam 39854452 BAM chimeric harmonized CPTAC3 07259cf4-0b74-49b8-95d1-cbb76b19b682 3dce394010bbd208b5abebb820c0800f {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor"} -C3L-03985.RNA-Seq.genomic.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.genomic.gdc_realn.bam 10075483300 BAM genomic harmonized CPTAC3 1b68d86f-1b36-4380-b4a9-f7cfdf0bdf6e 9b1c820db989fa550c0e0664f788725e {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.RNA-Seq.genomic.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.genomic.gdc_realn.bam 9589937083 BAM genomic harmonized CPTAC3 731759f7-36bf-43e1-902e-84d97b58d727 e47e3ccd67c3b0fe671579f0bfc07cab {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor"} -C3L-03985.RNA-Seq.S25_L007_R1.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 4489985968 FASTQ S25_L007_R1 unaligned CPTAC3 8a4011af-5392-4312-8667-f6c36e0f18c8 94e60186aa70f78f79fab29d1c3e7bd5 {"aliquot_tag": "ALQ_4fa6a5d1", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03985.RNA-Seq.S25_L007_R2.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 4876931429 FASTQ S25_L007_R2 unaligned CPTAC3 1268677c-512f-4f58-9b5e-053863b2aed8 0c56883573ec6b3c947b0d8899a0029d {"aliquot_tag": "ALQ_4fa6a5d1", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03985.RNA-Seq.S8_L002_R1.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 3662036527 FASTQ S8_L002_R1 unaligned CPTAC3 54dfb0af-453c-4b8e-a8d9-d04e7281412b a19ca37c44df8d3022de61476144f75c {"aliquot_tag": "ALQ_89ea1405", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.RNA-Seq.S8_L002_R2.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 4242134507 FASTQ S8_L002_R2 unaligned CPTAC3 6425132a-97b4-43cc-9fbe-3b44d2646263 8b8b658407c66eb2b66e4494a7c96575 {"aliquot_tag": "ALQ_89ea1405", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.RNA-Seq.transcriptome.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.transcriptome.gdc_realn.bam 7764835733 BAM transcriptome harmonized CPTAC3 dcbf1ff5-ffe9-4cb8-a6c2-93d9fcad50b5 db4b2ab973a61ea454d399cb1fc80b5c {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.RNA-Seq.transcriptome.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.transcriptome.gdc_realn.bam 11620197258 BAM transcriptome harmonized CPTAC3 fe6c764b-e896-48a2-9e95-19760d13d032 8530ff2de40883b020b5c89dd6ceb15d {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor"} -C3L-03985.WGS.N C3L-03985 LUAD WGS blood_normal CPT0255020002 CPT0255020002.WholeGenome.RP-1303.bam 83398337617 BAM aligned CPTAC3 14147a08-ab16-45ae-8d79-ff58b0e6b3bd 8d1b39db1b4c6f46d01b1e01c3907063 {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03985.WGS.N.hg38 C3L-03985 LUAD WGS blood_normal CPT0255020002 ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wgs_gdc_realn.bam 122987289593 BAM harmonized CPTAC3 5aba0e04-2e1f-4ae7-918c-8261be9bcddb ab0526cfc51bc1e18cc3b6dc4952730d {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03985.WGS.T C3L-03985 LUAD WGS tumor CPT0254880007 CPT0254880007.WholeGenome.RP-1303.bam 57878855669 BAM aligned CPTAC3 773d767b-8f4b-4319-bc59-50daaa452b47 68275bde23ef4f09e43ddb6fdbf6ccb7 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor"} -C3L-03985.WGS.T.hg38 C3L-03985 LUAD WGS tumor CPT0254880007 25c995d7-c22e-4ac7-8e76-bc68a944f046_wgs_gdc_realn.bam 84388858786 BAM harmonized CPTAC3 836e8686-90ce-4136-9115-edaddaa819c6 3ef394c91f28ad29ce20c8d229adfb19 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor"} -C3L-03985.WXS.A C3L-03985 LUAD WXS tissue_normal CPT0254910007 CPT0254910007.WholeExome.RP-1303.bam 24555609511 BAM aligned CPTAC3 38fa9d16-36da-4256-bd48-aa375a0c0c65 b134ed1c432899ea1de284c156e211f7 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.WXS.A.hg38 C3L-03985 LUAD WXS tissue_normal CPT0254910007 91d0e4bf-020f-418a-b0f2-ff88830ec283_wxs_gdc_realn.bam 33996992054 BAM harmonized CPTAC3 8d13bc57-6d8f-4a6e-adb7-1e49d5a9b4ac a99b7d07a43f2262d664d3a5cc7c30a9 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03985.WXS.N C3L-03985 LUAD WXS blood_normal CPT0255020002 CPT0255020002.WholeExome.RP-1303.bam 27890591034 BAM aligned CPTAC3 c978865c-9bda-47f2-815b-e230f455ce60 3dfe09660714c16cae26c1566e2ba1f0 {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03985.WXS.N.hg38 C3L-03985 LUAD WXS blood_normal CPT0255020002 ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wxs_gdc_realn.bam 38440328540 BAM harmonized CPTAC3 ab390407-839f-4c7f-8521-22d845feb009 ac8817aba92e0d3aa493ac623024fb90 {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal"} -C3L-03985.WXS.T C3L-03985 LUAD WXS tumor CPT0254880007 CPT0254880007.WholeExome.RP-1303.bam 28916081753 BAM aligned CPTAC3 7b08630c-e151-4838-a4f1-16bab58950bb 37f618b35b58a049e74b45319c846955 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor"} -C3L-03985.WXS.T.hg38 C3L-03985 LUAD WXS tumor CPT0254880007 25c995d7-c22e-4ac7-8e76-bc68a944f046_wxs_gdc_realn.bam 41005732418 BAM harmonized CPTAC3 173ce51f-064d-4d0a-9c3b-845c8baa3b4a c41909af27d51b2151dd12a5994d74ae {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor"} -C3L-03987.MethArray.Green.A C3L-03987 LSCC Methylation_Array tissue_normal CPT0252590009 204367490061_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e2acd2e8-dd92-4910-a080-f175402e11ef e33ddbc169834e48756e9f0d8d31e8c6 {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.MethArray.Green.T C3L-03987 LSCC Methylation_Array tumor CPT0252540006 204372030164_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5c1d8b35-1a5a-46ca-a8c2-4c627d5e132f ac740bdbcd4af4a11870c70568896610 {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor"} -C3L-03987.MethArray.Red.A C3L-03987 LSCC Methylation_Array tissue_normal CPT0252590009 204367490061_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 e4bd94ef-e5b3-4b06-bdf3-7a2216b62e30 ee54fc3f9a82989baa723426f73fcd10 {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.MethArray.Red.T C3L-03987 LSCC Methylation_Array tumor CPT0252540006 204372030164_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 40be6bc5-91cc-4942-9478-9ce06a638148 a61e127ba8f0482568fd74bab6afb757 {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor"} -C3L-03987.miRNA-Seq.A.hg38 C3L-03987 LSCC miRNA-Seq tissue_normal CPT0252590006 78a3b6e2-1284-4a64-b2a5-69d907a6a5db_mirnaseq_gdc_realn.bam 325626703 BAM harmonized CPTAC3 557b919c-13f5-4d9f-980a-2ae3e7158bb4 324a781b94f79b6c4ec5775ddc72396c {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.miRNA-Seq.S15_L001_R1.T C3L-03987 LSCC miRNA-Seq tumor CPT0252540013 200325_UNC31-K00269_0272_AHHC2NBBXY_CTATAC_S15_L001_R1_001.unaln.bam 261348339 BAM S15_L001_R1 unaligned CPTAC3 2d37ae53-7b41-4f05-9d1c-74b2992d79f2 149325268fcd4e61c57c619f6f247e85 {"aliquot_tag": "ALQ_cc113f8e", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03987.miRNA-Seq.S39_L006_R1.A C3L-03987 LSCC miRNA-Seq tissue_normal CPT0252590006 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTATAC_S39_L006_R1_001.unaln.bam 287186555 BAM S39_L006_R1 unaligned CPTAC3 306b11f0-b495-43db-9ebf-74ded40adab6 c6f1e0f4005eaa8b3cc40aab513a7275 {"aliquot_tag": "ALQ_5df03ef1", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.miRNA-Seq.T.hg38 C3L-03987 LSCC miRNA-Seq tumor CPT0252540013 e44c8fb3-1eca-4b5a-9289-1cdc6e2d8650_mirnaseq_gdc_realn.bam 281426554 BAM harmonized CPTAC3 f74cd8f8-afff-44db-93d9-c85841d4738b 39d13b6ef5aec9e6c4d906d9d47b9025 {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor"} -C3L-03987.RNA-Seq.chimeric.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.chimeric.gdc_realn.bam 32723132 BAM chimeric harmonized CPTAC3 b356005d-8a36-40ca-9fd0-8acc277f12eb 9dd081c3510de64b897211ec25860a63 {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.RNA-Seq.chimeric.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.chimeric.gdc_realn.bam 85666900 BAM chimeric harmonized CPTAC3 4e5720dd-c3fa-430a-89f7-952a252ae9cd 9725c15e23ee39b4c04e2bcb0bc419e0 {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor"} -C3L-03987.RNA-Seq.genomic.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.genomic.gdc_realn.bam 8558293208 BAM genomic harmonized CPTAC3 a4f14f87-7a07-4004-90b2-3a2407ad5264 158b9554914b2da98a86138066041bca {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.RNA-Seq.genomic.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.genomic.gdc_realn.bam 7712339248 BAM genomic harmonized CPTAC3 00e7e7a6-a173-40f0-9142-ec6a649decac 201700b9e3eff79398b45deaedfbef5a {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor"} -C3L-03987.RNA-Seq.S23_L006_R1.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 3917487475 FASTQ S23_L006_R1 unaligned CPTAC3 8a661ca8-7570-4cba-a726-78205f60aa1b 8be71db0297d31751134612fb6ab7291 {"aliquot_tag": "ALQ_5df03ef1", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.RNA-Seq.S23_L006_R1.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R1_001.fastq.gz 3904992759 FASTQ S23_L006_R1 unaligned CPTAC3 f67c42b8-3e96-439f-9be0-26efce378646 c268ff318fe8a57ef210444c2048eaf9 {"aliquot_tag": "ALQ_cc113f8e", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-03987.RNA-Seq.S23_L006_R2.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4781947706 FASTQ S23_L006_R2 unaligned CPTAC3 aff407f2-bcab-4cb6-8336-5444bff8bb06 7386a790b34f08bbb10fd1d3997f06ae {"aliquot_tag": "ALQ_5df03ef1", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.RNA-Seq.S23_L006_R2.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R2_001.fastq.gz 4106265099 FASTQ S23_L006_R2 unaligned CPTAC3 d6acd99d-46a3-4459-a08f-e4a4b11ee4d0 e05c3424e742a083f09bd1c653a8fe48 {"aliquot_tag": "ALQ_cc113f8e", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-03987.RNA-Seq.transcriptome.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.transcriptome.gdc_realn.bam 9523577768 BAM transcriptome harmonized CPTAC3 68b1f4c7-7062-43f3-b11a-c21ecb2e5bdd 5a4f559669996f30cca0686c59cdbeb9 {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.RNA-Seq.transcriptome.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.transcriptome.gdc_realn.bam 10910912544 BAM transcriptome harmonized CPTAC3 c0895db7-26ee-4d22-86be-9a6f4262819b 6383b083b45413ff2aa0fd60c00ed9be {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor"} -C3L-03987.WGS.N C3L-03987 LSCC WGS blood_normal CPT0252700002 CPT0252700002.WholeGenome.RP-2158.bam 21229115177 BAM aligned CPTAC3 8e8419d5-650d-4b80-b9c6-a5549c322550 e8355a371bdf55693037a6512a5ecc5c {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal"} -C3L-03987.WGS.N.hg38 C3L-03987 LSCC WGS blood_normal CPT0252700002 00f9704c-e6ea-446b-ac12-1f310e969a2b_wgs_gdc_realn.bam 63542945824 BAM harmonized CPTAC3 c88a46c1-fe32-430b-a123-5a297afef1c0 ef6eacc58aee6248b87f67a02bdb3157 {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal"} -C3L-03987.WGS.T C3L-03987 LSCC WGS tumor CPT0252540006 CPT0252540006.WholeGenome.RP-2158.bam 25941364632 BAM aligned CPTAC3 f03ce40b-71d0-41c3-ae24-6a6eb64b34fb 1b38c1e8238ef8dc328a2ca5205ada37 {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor"} -C3L-03987.WGS.T.hg38 C3L-03987 LSCC WGS tumor CPT0252540006 a70d0e10-82c3-4cf3-b3a3-fc3fed293587_wgs_gdc_realn.bam 78541080120 BAM harmonized CPTAC3 832d5ddd-2ebc-4840-92a7-c0f25855ec1e ea7e7c2cdc6378584e78f9d11765a86a {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor"} -C3L-03987.WXS.A C3L-03987 LSCC WXS tissue_normal CPT0252590009 CPT0252590009.WholeExome.RP-1303.bam 20783240479 BAM aligned CPTAC3 e2f11f45-98c9-4f38-a4fd-5effee03ad44 baba171f396a099d5b92d533ea4929be {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.WXS.A.hg38 C3L-03987 LSCC WXS tissue_normal CPT0252590009 6f9f9b52-e1c1-425e-85ba-8300ccb37528_wxs_gdc_realn.bam 28822313241 BAM harmonized CPTAC3 d8be566f-fa07-4da4-b1dc-8577eaa47579 36e66edb186308ac341f054b4f5b40dd {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal"} -C3L-03987.WXS.N C3L-03987 LSCC WXS blood_normal CPT0252700002 CPT0252700002.WholeExome.RP-1303.bam 20722361996 BAM aligned CPTAC3 9b2e232d-424d-4114-a94e-d9778a7895cd faca83ab6789a715a48f5771390b699f {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal"} -C3L-03987.WXS.N.hg38 C3L-03987 LSCC WXS blood_normal CPT0252700002 00f9704c-e6ea-446b-ac12-1f310e969a2b_wxs_gdc_realn.bam 27830022718 BAM harmonized CPTAC3 1227fac0-e088-48bf-87be-e91b7a5a7292 0c675a7a2a89dd59f10f83e7499a757a {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal"} -C3L-03987.WXS.T C3L-03987 LSCC WXS tumor CPT0252540006 CPT0252540006.WholeExome.RP-1303.bam 32209599109 BAM aligned CPTAC3 b9048b2b-a34f-4e83-b0a7-f74440cabc52 2b53e7803b3a1f255fcb32eb69daeebf {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor"} -C3L-03987.WXS.T.hg38 C3L-03987 LSCC WXS tumor CPT0252540006 a70d0e10-82c3-4cf3-b3a3-fc3fed293587_wxs_gdc_realn.bam 43630345732 BAM harmonized CPTAC3 b07e8ade-3e51-45c1-a170-5c9eed214522 a0b00bb5e32f6935d2fd2c2a25cbafcf {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor"} -C3L-04013.MethArray.Green.A C3L-04013 LSCC Methylation_Array tissue_normal CPT0233330006 203220070171_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3b1e79f4-043c-4da0-bb92-8865bbd780f6 9fb669cf7c33c0b2fc197330e8433f1f {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.MethArray.Green.T C3L-04013 LSCC Methylation_Array tumor CPT0233320006 203219670117_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d9c4f0cb-d26b-46c6-8937-9e7a19a909ab 2aae3ac1a73548f64b33ee1a00f67abf {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor"} -C3L-04013.MethArray.Red.A C3L-04013 LSCC Methylation_Array tissue_normal CPT0233330006 203220070171_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6233e085-48e4-465e-a6a1-fe3c48ce6f12 c0fe201ce0588ce995aa3e2fcb6a9c26 {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.MethArray.Red.T C3L-04013 LSCC Methylation_Array tumor CPT0233320006 203219670117_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 4b4d2bfb-cc71-46c2-86a6-9c6f32a4d0e5 321e23ec09de4ef6fb8e6a0e1d3d72a4 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor"} -C3L-04013.miRNA-Seq.A.hg38 C3L-04013 LSCC miRNA-Seq tissue_normal CPT0233330009 e9929fae-5f4a-44f3-a382-e4ddb1c9284a_mirnaseq_gdc_realn.bam 203889965 BAM harmonized CPTAC3 b83b7ac4-3c9f-4d15-856e-33e28ad3bb18 b24fa0dc2046a4b7973bfcf0997b4d1a {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.miRNA-Seq.S15_L005_R1.A C3L-04013 LSCC miRNA-Seq tissue_normal CPT0233330009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCAACA_S15_L005_R1_001.unaln.bam 180938970 BAM S15_L005_R1 unaligned CPTAC3 07d0efd5-5c21-48ea-a5ea-cd9538270dff 00fb15cbdc3a6b6a8e17fb16944cabab {"aliquot_tag": "ALQ_31bedaef", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.miRNA-Seq.S48_L004_R1.T C3L-04013 LSCC miRNA-Seq tumor CPT0233320009 190206_UNC31-K00269_0191_AH2WY5BBXY_GAGTGG_S48_L004_R1_001.unaln.bam 199983012 BAM S48_L004_R1 unaligned CPTAC3 a6f68360-4b2f-42f9-a43a-7f5ab41387a0 11851a2dea2bf5038bed8e95c9e43401 {"aliquot_tag": "ALQ_cdef35f", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04013.miRNA-Seq.T.hg38 C3L-04013 LSCC miRNA-Seq tumor CPT0233320009 794bdc00-aaee-4a7f-9547-5a26200cf038_mirnaseq_gdc_realn.bam 223147285 BAM harmonized CPTAC3 e14b1d68-5167-43a6-873b-99a2478f4ae9 ddd2ae2d81dcb5460aab6d30771a60f5 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor"} -C3L-04013.RNA-Seq.chimeric.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.chimeric.gdc_realn.bam 174168661 BAM chimeric harmonized CPTAC3 dd3cc960-8deb-4e8c-8dcf-0407e0febde8 a24a6a999ea2ee9045b4cec9e6cca791 {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.RNA-Seq.chimeric.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.chimeric.gdc_realn.bam 248318439 BAM chimeric harmonized CPTAC3 23da7d40-4dff-4b1f-a559-00a9b3e1cfcd b195275f3062ac69b9f35ecf439055b5 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor"} -C3L-04013.RNA-Seq.genomic.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.genomic.gdc_realn.bam 8226544580 BAM genomic harmonized CPTAC3 970ffa4a-4984-4b9d-9c4e-9e3d8924524e 3f5cf34827af063a87557ef061263fdd {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.RNA-Seq.genomic.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.genomic.gdc_realn.bam 9214484120 BAM genomic harmonized CPTAC3 3a854c09-9213-45d0-bc40-407f107276f5 2e3738bbc620fb92d4e3a6c219345640 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor"} -C3L-04013.RNA-Seq.S13_L004_R1.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 4483331608 FASTQ S13_L004_R1 unaligned CPTAC3 e24c880a-0b28-442b-b725-01e230d25b72 2b97d5d319870d82f5f34e8c85bc4044 {"aliquot_tag": "ALQ_cdef35f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04013.RNA-Seq.S13_L004_R2.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 4917643641 FASTQ S13_L004_R2 unaligned CPTAC3 13a7746f-a260-4fe9-9ab8-7d9be7fc0a47 4cf7a6c1da48a7f0888ace4529e53f48 {"aliquot_tag": "ALQ_cdef35f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04013.RNA-Seq.S5_L008_R1.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R1_001.fastq.gz 3931874677 FASTQ S5_L008_R1 unaligned CPTAC3 be7501b0-9269-4db7-9c83-2fd15e5e71cf a86e77434372f9fe52aa2057cc44403a {"aliquot_tag": "ALQ_31bedaef", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.RNA-Seq.S5_L008_R2.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R2_001.fastq.gz 4439839166 FASTQ S5_L008_R2 unaligned CPTAC3 2394d37f-55b6-4fe9-b52b-97ea7aa92523 b32c77f32f23ad96a80e18ee33d7585d {"aliquot_tag": "ALQ_31bedaef", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.RNA-Seq.transcriptome.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.transcriptome.gdc_realn.bam 9820171059 BAM transcriptome harmonized CPTAC3 7df76a2b-9476-4af8-9bae-9d1ff00578f9 1c4898aebecb120400714412d79f9a42 {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.RNA-Seq.transcriptome.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.transcriptome.gdc_realn.bam 9603735662 BAM transcriptome harmonized CPTAC3 59b85307-3b8e-411b-a0ef-13671d9f99cd 3399f86e1a26ed53d1f60b0f681bc0e6 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor"} -C3L-04013.WGS.N C3L-04013 LSCC WGS blood_normal CPT0233440002 CPT0233440002.WholeGenome.RP-1303.bam 63967020461 BAM aligned CPTAC3 98ffabf1-0c54-45ef-ae4c-19c8684ea085 84832f01254047a01d89cfffa60db6fc {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-04013.WGS.N.hg38 C3L-04013 LSCC WGS blood_normal CPT0233440002 0e3452f6-3bfd-46b5-b974-1b142a82845e_wgs_gdc_realn.bam 92470461052 BAM harmonized CPTAC3 11e71a75-c179-414d-a78f-03aa26e8ef3b ab9387e1eebdd3c74d01f4d1d056dd0b {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-04013.WGS.T C3L-04013 LSCC WGS tumor CPT0233320006 CPT0233320006.WholeGenome.RP-1303.bam 60923004927 BAM aligned CPTAC3 c861686d-6619-48dc-b9f3-56f616d43649 2bcc51d8fc19d63adb8e344767267039 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor"} -C3L-04013.WGS.T.hg38 C3L-04013 LSCC WGS tumor CPT0233320006 7f8bd24f-62f5-4fbc-8633-378805089c7c_wgs_gdc_realn.bam 88135792490 BAM harmonized CPTAC3 fa19974e-c452-4f58-ac86-f1a1e9d5439d c1a327703a6a12d85615b9639c64de94 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor"} -C3L-04013.WXS.A C3L-04013 LSCC WXS tissue_normal CPT0233330006 CPT0233330006.WholeExome.RP-1303.bam 18608598102 BAM aligned CPTAC3 df5fc839-079e-416a-8fe8-c457828e7a86 d0986a92f9cf70aaf0ebc7a60e42a469 {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.WXS.A.hg38 C3L-04013 LSCC WXS tissue_normal CPT0233330006 79b4a87a-5b1d-4101-ba62-9b5679d17530_wxs_gdc_realn.bam 25688883189 BAM harmonized CPTAC3 48429458-bd82-422f-bc90-1308276a3d92 c89f600f94e2c28bc87497c15b43c1af {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04013.WXS.N C3L-04013 LSCC WXS blood_normal CPT0233440002 CPT0233440002.WholeExome.RP-1303.bam 20116857920 BAM aligned CPTAC3 698cdfe2-1dd5-453e-a29a-f84d9cf662a5 323e4c1fb73d5bad777eb7800c35fbb8 {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-04013.WXS.N.hg38 C3L-04013 LSCC WXS blood_normal CPT0233440002 0e3452f6-3bfd-46b5-b974-1b142a82845e_wxs_gdc_realn.bam 27940925237 BAM harmonized CPTAC3 79babf82-0500-4b82-b76d-81919961bc8f e42584cf3734f4e0e04e5d2360cb2998 {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal"} -C3L-04013.WXS.T C3L-04013 LSCC WXS tumor CPT0233320006 CPT0233320006.WholeExome.RP-1303.bam 22143908083 BAM aligned CPTAC3 2e9ebc9e-50db-4e1a-a9ae-cd743306d60b 67ef645f2bc83d84e33fa21b584bdb16 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor"} -C3L-04013.WXS.T.hg38 C3L-04013 LSCC WXS tumor CPT0233320006 7f8bd24f-62f5-4fbc-8633-378805089c7c_wxs_gdc_realn.bam 30497169515 BAM harmonized CPTAC3 a0403770-4fad-409c-8955-81b27b2ddef2 1024de0595b202d43ca512a5c718f02d {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor"} -C3L-04014.MethArray.Green.A C3L-04014 LSCC Methylation_Array tissue_normal CPT0233640006 203219670019_R06C01_Grn.idat 13676232 IDAT Green NA CPTAC3 4ee44d51-80cd-4bca-80e4-a113b905e43d c386cc43ee6a055aed57f593df6a3d2f {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.MethArray.Green.T C3L-04014 LSCC Methylation_Array tumor CPT0233600006 203219650136_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 2c3eba83-d68d-47e0-bd2c-05d79b4dd495 fa777c3959d8c803d2791cf3a511d920 {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor"} -C3L-04014.MethArray.Red.A C3L-04014 LSCC Methylation_Array tissue_normal CPT0233640006 203219670019_R06C01_Red.idat 13676232 IDAT Red NA CPTAC3 4d67d427-e212-4651-bf78-7b12cc53fb8e cc0f3d3255c9ddb9e436d0019bb27d85 {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.MethArray.Red.T C3L-04014 LSCC Methylation_Array tumor CPT0233600006 203219650136_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 3fcf0e40-4c36-4d76-8cf7-fda97fe4db20 744aca7dd8959f8263ec43bd82ca89ae {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor"} -C3L-04014.miRNA-Seq.A.hg38 C3L-04014 LSCC miRNA-Seq tissue_normal CPT0233640009 c2fc02ba-8981-4a09-b7b7-6709ede9275d_mirnaseq_gdc_realn.bam 286128501 BAM harmonized CPTAC3 41ec720c-2397-4a72-9322-74a824710415 d72ed33da05a8e7edc8cfb349ce150dd {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.miRNA-Seq.S14_L005_R1.A C3L-04014 LSCC miRNA-Seq tissue_normal CPT0233640009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGGAAT_S14_L005_R1_001.unaln.bam 253446517 BAM S14_L005_R1 unaligned CPTAC3 3fbac0fd-7ee1-4d1b-9f88-bca6e399bd9c bac1a844d68da8bbadcaa4de2a005322 {"aliquot_tag": "ALQ_d353974c", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.miRNA-Seq.S26_L004_R1.T C3L-04014 LSCC miRNA-Seq tumor CPT0233600009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGTAGC_S26_L004_R1_001.unaln.bam 191214213 BAM S26_L004_R1 unaligned CPTAC3 a1aa9e6b-e87f-442c-84fc-4e8acbc6e2a2 e05f17ec9552313f27eea6686100342b {"aliquot_tag": "ALQ_26d3318c", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04014.miRNA-Seq.T.hg38 C3L-04014 LSCC miRNA-Seq tumor CPT0233600009 51f975d5-0c3e-4dc8-8ea4-169f658516cc_mirnaseq_gdc_realn.bam 219309349 BAM harmonized CPTAC3 f14d343d-0687-41e5-a28e-dff742cd88cf f1ce99711fa2c53031c9ea67b12ca54e {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor"} -C3L-04014.RNA-Seq.chimeric.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.chimeric.gdc_realn.bam 375248849 BAM chimeric harmonized CPTAC3 f41d73dd-f7a4-4086-bde6-863455a97143 6854a7fa3d2f35304aaf03cb9ee3c2f3 {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.RNA-Seq.chimeric.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.chimeric.gdc_realn.bam 244287261 BAM chimeric harmonized CPTAC3 a3562415-48f5-420d-a2fe-bd2cd2575981 1382fe571a192452b9184ea89e38664c {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor"} -C3L-04014.RNA-Seq.genomic.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.genomic.gdc_realn.bam 8848520670 BAM genomic harmonized CPTAC3 9e97a9e6-378f-4451-a774-67153c27ee82 713ef69245f954a8d9a2ca99c7c7cda7 {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.RNA-Seq.genomic.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.genomic.gdc_realn.bam 9522546421 BAM genomic harmonized CPTAC3 0fce155a-ec4e-4443-b325-ff4cd0d86849 7e0292c5a198978eaf082c31df87ded3 {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor"} -C3L-04014.RNA-Seq.S16_L004_R1.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 4286140076 FASTQ S16_L004_R1 unaligned CPTAC3 304b43ab-ba52-45dc-8640-61acc3110fe0 96753b64ccff4b600585570c9dbf4cb2 {"aliquot_tag": "ALQ_26d3318c", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04014.RNA-Seq.S16_L004_R2.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 4754186991 FASTQ S16_L004_R2 unaligned CPTAC3 12fa26b4-6d43-4558-b2e7-b76d9ae52077 f737a3de7254b52bb29c2b0a2a14eace {"aliquot_tag": "ALQ_26d3318c", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04014.RNA-Seq.S6_L008_R1.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R1_001.fastq.gz 4174954569 FASTQ S6_L008_R1 unaligned CPTAC3 0797d2d1-7873-454b-b4e9-83c063d5bf62 859d92e14ae336bac2ed10add5d49353 {"aliquot_tag": "ALQ_d353974c", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.RNA-Seq.S6_L008_R2.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R2_001.fastq.gz 4668660054 FASTQ S6_L008_R2 unaligned CPTAC3 8ebf4441-88d5-4f17-a826-d63e3c424296 baae4d855668b6bb9d29f90ac90b42f1 {"aliquot_tag": "ALQ_d353974c", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.RNA-Seq.transcriptome.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.transcriptome.gdc_realn.bam 9888377751 BAM transcriptome harmonized CPTAC3 12353aee-8bc6-4f37-803d-79182ca198a8 3614dac4710e2c33f024beb3c79d09a5 {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.RNA-Seq.transcriptome.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.transcriptome.gdc_realn.bam 10852745697 BAM transcriptome harmonized CPTAC3 fcb9f455-f284-4645-ba63-8294cbe54634 beeab08a84ed1a560cc3ba556970cac2 {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor"} -C3L-04014.WGS.N C3L-04014 LSCC WGS blood_normal CPT0233750002 CPT0233750002.WholeGenome.RP-1303.bam 56691748843 BAM aligned CPTAC3 a54acbb2-6d87-4d73-b2db-185b2751b31f bd1aa8e0e6ecc6797ee3a6fbc51284c4 {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-04014.WGS.N.hg38 C3L-04014 LSCC WGS blood_normal CPT0233750002 9eb60886-10fc-4637-8745-d721a4f514e5_wgs_gdc_realn.bam 82820611592 BAM harmonized CPTAC3 8cbda257-6835-4990-81de-e5ffa268a15f 0025ed297c02b9882eaead8f25eac0b4 {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-04014.WGS.T C3L-04014 LSCC WGS tumor CPT0233600006 CPT0233600006.WholeGenome.RP-1303.bam 64429291994 BAM aligned CPTAC3 37428e63-fc98-48c0-a259-c3c9a0a79d82 943ed0d95b9db163f83c2d655539f098 {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor"} -C3L-04014.WGS.T.hg38 C3L-04014 LSCC WGS tumor CPT0233600006 295863ad-93e1-4be4-b13e-0bbd4ca64aff_wgs_gdc_realn.bam 94589190053 BAM harmonized CPTAC3 ab5e2db8-499b-456b-a9a7-7a926b1b48f1 1976404201489e466b2069d76faaffcc {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor"} -C3L-04014.WXS.A C3L-04014 LSCC WXS tissue_normal CPT0233640006 CPT0233640006.WholeExome.RP-1303.bam 26569444569 BAM aligned CPTAC3 21a7c9be-1c73-4c54-a677-3018427e0e98 1abebd4460766e5113df76476076e9e0 {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.WXS.A.hg38 C3L-04014 LSCC WXS tissue_normal CPT0233640006 bad3d5df-1ada-4f6e-8625-118a57736378_wxs_gdc_realn.bam 35950954081 BAM harmonized CPTAC3 6976aa76-4f75-41e8-b55c-6f49f314c0e8 b1f4faa66080f6b39e9954a4f66e710c {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04014.WXS.N C3L-04014 LSCC WXS blood_normal CPT0233750002 CPT0233750002.WholeExome.RP-1303.bam 40380021983 BAM aligned CPTAC3 fd78cda4-5d8a-4f73-b9c6-009509ce99a8 561cb59821ff5e24fe68f5f80ffce77f {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-04014.WXS.N.hg38 C3L-04014 LSCC WXS blood_normal CPT0233750002 9eb60886-10fc-4637-8745-d721a4f514e5_wxs_gdc_realn.bam 56017714498 BAM harmonized CPTAC3 bcd0fdb2-0ee7-4cc8-88e1-483f364e627d f295e635b7195e73cf543d40e8ea345f {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal"} -C3L-04014.WXS.T C3L-04014 LSCC WXS tumor CPT0233600006 CPT0233600006.WholeExome.RP-1303.bam 28147753692 BAM aligned CPTAC3 5af8a4e2-f0cb-4f8d-aa98-b9e314d104c5 cf860b6f1350edd6322fb2b8d0e7d5a8 {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor"} -C3L-04014.WXS.T.hg38 C3L-04014 LSCC WXS tumor CPT0233600006 295863ad-93e1-4be4-b13e-0bbd4ca64aff_wxs_gdc_realn.bam 38121801668 BAM harmonized CPTAC3 71867537-620c-487a-b91b-0d0bcbd8c44c 462b6fe9b999f6fad66da6669d4141eb {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor"} -C3L-04025.MethArray.Green.A C3L-04025 HNSCC Methylation_Array tissue_normal CPT0256590007 203273200073_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f7920919-8a73-41d2-ad56-4c8596a51f7a 2f7dde89a540764cb3b7d2f3c199f96c {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.MethArray.Green.T C3L-04025 HNSCC Methylation_Array tumor CPT0256560006 203219650047_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a9cbf2a0-3573-496b-aa11-7eee9e06c57e 3c1fde7b01777b4b499b8b7147f49c2b {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor"} -C3L-04025.MethArray.Red.A C3L-04025 HNSCC Methylation_Array tissue_normal CPT0256590007 203273200073_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 d56315df-e8b6-409e-9b74-889e8343d65b 99b98774f4d506d68d243af66368aab4 {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.MethArray.Red.T C3L-04025 HNSCC Methylation_Array tumor CPT0256560006 203219650047_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 1b7a2298-19ef-4ebd-bc09-3e58ceee87f6 a55f4bd12b3dcf354119a6178a7df27e {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor"} -C3L-04025.miRNA-Seq.A.hg38 C3L-04025 HNSCC miRNA-Seq tissue_normal CPT0256590010 0d3e5686-f413-46df-a992-d86b970c65bd_mirnaseq_gdc_realn.bam 234789116 BAM harmonized CPTAC3 593a3a7d-15fb-4728-9bb5-d4dff14e7529 23d341e0423872a5d0149a5857f19b38 {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.miRNA-Seq.S3_L007_R1.T C3L-04025 HNSCC miRNA-Seq tumor CPT0256560009 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L007_R1_001.unaln.bam 226638163 BAM S3_L007_R1 unaligned CPTAC3 c7c26062-86da-4bc3-ac18-0d19778263ac 4ea882002da081a76f4052961bf7c76d {"aliquot_tag": "ALQ_bb5090a2", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04025.miRNA-Seq.S43_L004_R1.A C3L-04025 HNSCC miRNA-Seq tissue_normal CPT0256590010 190508_UNC31-K00269_0215_BH7FYKBBXY_TACAGC_S43_L004_R1_001.unaln.bam 205659168 BAM S43_L004_R1 unaligned CPTAC3 f3c549a4-004e-43b7-9b2e-1a6bf1983292 12715e38beaaa87c3aaf5fb8c7d88311 {"aliquot_tag": "ALQ_59c78e96", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.miRNA-Seq.T.hg38 C3L-04025 HNSCC miRNA-Seq tumor CPT0256560009 5ae5b933-19d4-475e-9d1e-ec3b66bc89b1_mirnaseq_gdc_realn.bam 252962371 BAM harmonized CPTAC3 438110b9-0fe5-44b0-b335-764f1eae3d80 3ccfd4a3dadc3fdea905420343fcbbf3 {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor"} -C3L-04025.RNA-Seq.chimeric.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.chimeric.gdc_realn.bam 27064308 BAM chimeric harmonized CPTAC3 f364a15a-9260-4a32-ba77-107cdcfcbd16 1bc80d0c364315b38b267d645ca3a8a9 {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.RNA-Seq.chimeric.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.chimeric.gdc_realn.bam 26164206 BAM chimeric harmonized CPTAC3 e965ab3f-277b-413e-b511-b04a1ca2af09 37d5d73caa3d3e94e329fc2b9355c9df {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor"} -C3L-04025.RNA-Seq.genomic.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.genomic.gdc_realn.bam 8328440818 BAM genomic harmonized CPTAC3 e7490ae1-3eee-465b-96b1-460bebbed516 0f441c1bb40078082335c350afe2353f {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.RNA-Seq.genomic.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.genomic.gdc_realn.bam 8095245184 BAM genomic harmonized CPTAC3 768b4f33-88f9-42c6-86b9-4cd763d18db6 c0158578b81626c63f4b581b324a77af {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor"} -C3L-04025.RNA-Seq.S17_L005_R1.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3972561332 FASTQ S17_L005_R1 unaligned CPTAC3 bb6b636b-ee6d-4c83-af19-845acee3f666 373c80878c2286ae3be8ed80a427a20e {"aliquot_tag": "ALQ_59c78e96", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.RNA-Seq.S17_L005_R2.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 4402378041 FASTQ S17_L005_R2 unaligned CPTAC3 881ceb87-9b07-4451-92b9-ff28e43c68b9 777903dfc6263ad3806d3b0e9959fa63 {"aliquot_tag": "ALQ_59c78e96", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.RNA-Seq.S44_L008_R1.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R1_001.fastq.gz 3772549655 FASTQ S44_L008_R1 unaligned CPTAC3 25c1e73d-131b-4d57-a892-e70b305f8760 dbfd61176e63b91adf10285727b12a0e {"aliquot_tag": "ALQ_bb5090a2", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04025.RNA-Seq.S44_L008_R2.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R2_001.fastq.gz 4192494749 FASTQ S44_L008_R2 unaligned CPTAC3 d48de247-9938-4802-9862-e1d81c261a25 ea8cd6bb86099c812eb46c67ac5c16fb {"aliquot_tag": "ALQ_bb5090a2", "sample": "S44", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04025.RNA-Seq.transcriptome.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.transcriptome.gdc_realn.bam 11396080353 BAM transcriptome harmonized CPTAC3 a51fa9b7-fbca-4874-bd85-1ac9b132d020 b07f7048655b7c71384ea26b958fcd35 {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.RNA-Seq.transcriptome.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.transcriptome.gdc_realn.bam 10511722372 BAM transcriptome harmonized CPTAC3 248787e3-941f-4cf6-b0a9-cf9eb50740bd 3051696fc3b8f4d9c619aaddcfa8984b {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor"} -C3L-04025.WGS.N C3L-04025 HNSCC WGS blood_normal CPT0256700002 CPT0256700002.WholeGenome.RP-1303.bam 59644094369 BAM aligned CPTAC3 db5faf5d-1367-4692-ab57-8406c7a3b725 1997073a8a4ffc1168797013d2f9c51d {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal"} -C3L-04025.WGS.N.hg38 C3L-04025 HNSCC WGS blood_normal CPT0256700002 380bd699-e9e1-4b6e-ae17-2ab7d0daca42_wgs_gdc_realn.bam 87489177823 BAM harmonized CPTAC3 2f8f0f1c-af93-4c0d-9cf3-2f114ce56c95 13887ea569a1dd7f38f3cda3c558615a {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal"} -C3L-04025.WGS.T C3L-04025 HNSCC WGS tumor CPT0256560006 CPT0256560006.WholeGenome.RP-1303.bam 59018257175 BAM aligned CPTAC3 477b4890-870d-4e20-8795-92628c254d04 d366ef9ab2ef5d3ccb597553793899db {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor"} -C3L-04025.WGS.T.hg38 C3L-04025 HNSCC WGS tumor CPT0256560006 e1676c01-5acc-48b5-99c3-2077a6ed1505_wgs_gdc_realn.bam 86028509691 BAM harmonized CPTAC3 c74bf74c-599d-4db3-ace0-f15122c73c73 de957866ef72ed637bcf8643c6e6f606 {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor"} -C3L-04025.WXS.A C3L-04025 HNSCC WXS tissue_normal CPT0256590007 CPT0256590007.WholeExome.RP-1303.bam 22719781926 BAM aligned CPTAC3 7983d44a-9151-4cdb-83d3-54c14ec2dcf9 9ac3274d4cbd09361a2354a8a17f163d {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.WXS.A.hg38 C3L-04025 HNSCC WXS tissue_normal CPT0256590007 3684c772-b80e-403e-acf5-73d510799ae5_wxs_gdc_realn.bam 31469944263 BAM harmonized CPTAC3 633a75d4-8eaf-454d-aeb2-fe1e3bcc7257 79eb8e4eb0c84cd0da823ac2d7afc2fc {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04025.WXS.N C3L-04025 HNSCC WXS blood_normal CPT0256700002 CPT0256700002.WholeExome.RP-1303.bam 27349150213 BAM aligned CPTAC3 b786e4a1-bd35-405a-a8e9-0aefc5a4e5d8 d6f7285c991dc735a666937ca6bcc807 {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal"} -C3L-04025.WXS.N.hg38 C3L-04025 HNSCC WXS blood_normal CPT0256700002 380bd699-e9e1-4b6e-ae17-2ab7d0daca42_wxs_gdc_realn.bam 37101731716 BAM harmonized CPTAC3 34b61581-e961-468f-98de-0303f9b1735c 90003cfea251835ffe06822cf05e667c {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal"} -C3L-04025.WXS.T C3L-04025 HNSCC WXS tumor CPT0256560006 CPT0256560006.WholeExome.RP-1303.bam 46675296668 BAM aligned CPTAC3 2ccc94fd-3ec4-4e73-b086-f96b3b3a42fb 224fab1538adaa57f2f81a014911d5ba {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor"} -C3L-04025.WXS.T.hg38 C3L-04025 HNSCC WXS tumor CPT0256560006 e1676c01-5acc-48b5-99c3-2077a6ed1505_wxs_gdc_realn.bam 63791508054 BAM harmonized CPTAC3 c22b6956-05b7-4794-94df-1311876efe51 f5feecd5d00e530f3558f14aa81a5767 {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor"} -C3L-04027.MethArray.Green.A C3L-04027 PDA Methylation_Array tissue_normal CPT0254740006 203561620085_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 574e5408-74fe-4ccf-a670-5c12b3755c4b 6f0e2a06ebb6ea1a048aee9d8edf01a5 {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.MethArray.Green.T C3L-04027 PDA Methylation_Array tumor CPT0254680006 203561450084_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 26a35e40-a51a-4fc2-893e-45fba4c8531e 0845d46da90f8f5785067cd1030ec65c {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04027.MethArray.Red.A C3L-04027 PDA Methylation_Array tissue_normal CPT0254740006 203561620085_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 fa99fc24-caf3-4270-b9bf-881fca009fd0 7f8bdfa8485837e6f40b009a5136ce8d {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.MethArray.Red.T C3L-04027 PDA Methylation_Array tumor CPT0254680006 203561450084_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 0fdede16-f67a-4f15-a119-3b3b700af3b2 a6a3d3440fb007ce339c2d07d3abf9df {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04027.miRNA-Seq.A.hg38 C3L-04027 PDA miRNA-Seq tissue_normal CPT0254740009 f941fff3-eaeb-4ee8-8d62-3d16975a5a5e_mirnaseq_gdc_realn.bam 287089959 BAM harmonized CPTAC3 f40f46f7-5cae-4c49-b937-93b8070acc2a 0158aed7ca26d13486b0a13fa1e26c61 {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.miRNA-Seq.S31_L002_R1.A C3L-04027 PDA miRNA-Seq tissue_normal CPT0254740009 190813_UNC32-K00270_0196_AH5MCWBBXY_CGATGT_S31_L002_R1_001.unaln.bam 254809804 BAM S31_L002_R1 unaligned CPTAC3 b0a3ce5f-1654-4506-bed2-57146c0d8d04 543a5f93f9a1a5245e54c23481baccd8 {"aliquot_tag": "ALQ_1bc773e0", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.miRNA-Seq.S33_L005_R1.T C3L-04027 PDA miRNA-Seq tumor CPT0254680009 190712_UNC32-K00270_0192_BH7HL3BBXY_TAGCTT_S33_L005_R1_001.unaln.bam 202327616 BAM S33_L005_R1 unaligned CPTAC3 1de0ed0c-a5f0-4d30-af89-44ad81e6a39c e01a5ad7b99d8629a4150bcdc0b001d2 {"aliquot_tag": "ALQ_156b4d44", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04027.miRNA-Seq.T.hg38 C3L-04027 PDA miRNA-Seq tumor CPT0254680009 8fa468ba-6f68-4a3b-8353-6ad7586e5bf0_mirnaseq_gdc_realn.bam 222875950 BAM harmonized CPTAC3 38751ca1-10c7-406e-9a12-355dc163b2e1 b89c1b7450f2179945187d1ac1f2f5ae {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor"} -C3L-04027.RNA-Seq.chimeric.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.chimeric.gdc_realn.bam 43892609 BAM chimeric harmonized CPTAC3 7671e162-39ee-4707-b0ba-d7f2e6245cb2 b824b316f8053939fc794e665cb40e38 {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.RNA-Seq.chimeric.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.chimeric.gdc_realn.bam 38474471 BAM chimeric harmonized CPTAC3 0172c6cc-641f-4a73-bc09-abc7cf91ee76 9339605ee106642ae9c9251b17d701bb {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor"} -C3L-04027.RNA-Seq.genomic.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.genomic.gdc_realn.bam 8411419719 BAM genomic harmonized CPTAC3 1a68c238-82cb-4860-9dde-1119a76922a8 5e0671c6711c91976acdd3fc433d8715 {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.RNA-Seq.genomic.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.genomic.gdc_realn.bam 8800388359 BAM genomic harmonized CPTAC3 0851babd-6826-4626-870c-26881d32880c c0e8f22a34d175ea132b35cbb01802a2 {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor"} -C3L-04027.RNA-Seq.S11_L003_R1.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R1_001.fastq.gz 4026607218 FASTQ S11_L003_R1 unaligned CPTAC3 33ca49b1-e9ed-4c95-9aeb-bc7aa415b6ef c0d2f0c4bdabb21e4b2914e14f80990a {"aliquot_tag": "ALQ_1bc773e0", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.RNA-Seq.S11_L003_R2.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R2_001.fastq.gz 4271815397 FASTQ S11_L003_R2 unaligned CPTAC3 e779fe94-29bb-40df-bb13-76a013fd2c53 7ea67e9627dd5d293e2f74ee74c9fef5 {"aliquot_tag": "ALQ_1bc773e0", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.RNA-Seq.S31_L008_R1.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R1_001.fastq.gz 4004986865 FASTQ S31_L008_R1 unaligned CPTAC3 159e4176-9a7c-44ed-b584-27f8aa02d5ec 174807932287aaa61f06d52ef9f0ed27 {"aliquot_tag": "ALQ_156b4d44", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04027.RNA-Seq.S31_L008_R2.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R2_001.fastq.gz 4614043434 FASTQ S31_L008_R2 unaligned CPTAC3 fc869480-fca0-4941-919c-2b34633ddda7 09aeb033dcd78a2a84d258026a2f9905 {"aliquot_tag": "ALQ_156b4d44", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04027.RNA-Seq.transcriptome.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.transcriptome.gdc_realn.bam 9252879958 BAM transcriptome harmonized CPTAC3 c3e8efe6-0113-4441-9394-e9057a6e1116 4b936f7c19f5297d4e7d7dbea03eecaa {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.RNA-Seq.transcriptome.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.transcriptome.gdc_realn.bam 11795834463 BAM transcriptome harmonized CPTAC3 ca7a4127-6c09-4991-966b-1ac192ec00c8 75c18ce16975a1a222f1641f979fc96d {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor"} -C3L-04027.Targeted.T C3L-04027 PDA Targeted_Sequencing tumor CPT0254680006 CPT0254680006.CustomSelection.RP-1303.PDO-18786.bam 6138985544 BAM aligned CPTAC3 1618bc31-7741-441b-ba00-6ae12dc8b0f4 00675eb4c7ce3826951f121faba36bdf {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04027.Targeted.T.hg38 C3L-04027 PDA Targeted_Sequencing tumor CPT0254680006 15c31aed-f331-407a-b9c9-6f7b71981967_targetedsequencing_gdc_realn.bam 8589310587 BAM harmonized CPTAC3 63747717-f4cd-4f46-bfc8-c669ed438324 0538abc39f0631a4b0e6bf5e8eb7275e {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04027.WGS.N C3L-04027 PDA WGS blood_normal CPT0254840002 CPT0254840002.WholeGenome.RP-1303.bam 85992466645 BAM aligned CPTAC3 33bdccaa-73f9-49cf-a276-908bc90e1969 9007c984eb98906b849b9da23e176c94 {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal"} -C3L-04027.WGS.N.hg38 C3L-04027 PDA WGS blood_normal CPT0254840002 e8b9f528-1288-40e6-8173-c2ed274135ab_wgs_gdc_realn.bam 125611981159 BAM harmonized CPTAC3 907f0b35-1883-4339-852b-48d317763b9c 7179b9c645175634ad401566cc2ec2cc {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal"} -C3L-04027.WGS.T C3L-04027 PDA WGS tumor CPT0254680006 CPT0254680006.WholeGenome.RP-1303.bam 74530529866 BAM aligned CPTAC3 5a8be679-058b-4650-94c4-62470766115a 6ab498f93d1e433c3dd26519e938052f {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04027.WGS.T.hg38 C3L-04027 PDA WGS tumor CPT0254680006 15c31aed-f331-407a-b9c9-6f7b71981967_wgs_gdc_realn.bam 108929217423 BAM harmonized CPTAC3 54e73d68-5160-4cbc-98ed-88c18bcc1693 f4aef4ce33ebd61a973579a05b430b09 {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04027.WXS.A C3L-04027 PDA WXS tissue_normal CPT0254740006 CPT0254740006.WholeExome.RP-1303.bam 21316699207 BAM aligned CPTAC3 e9b283fc-e84d-484f-a3cd-40df138e6758 517c0a87ec9aeadea5d3e12a60c889d0 {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.WXS.A.hg38 C3L-04027 PDA WXS tissue_normal CPT0254740006 f0973e45-389e-48c2-b579-fb9a8a8b956b_wxs_gdc_realn.bam 29237915602 BAM harmonized CPTAC3 85b68dd4-92c9-4207-98c3-cc50ed763654 908e9c771089d2ded3dfb1585bf093a9 {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04027.WXS.N C3L-04027 PDA WXS blood_normal CPT0254840002 CPT0254840002.WholeExome.RP-1303.bam 28723383729 BAM aligned CPTAC3 c983c4a1-a9cd-46e2-aef0-7f18d3f9c3ad de9b701a6d8e28e7e4f3f0631482fb10 {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal"} -C3L-04027.WXS.N.hg38 C3L-04027 PDA WXS blood_normal CPT0254840002 e8b9f528-1288-40e6-8173-c2ed274135ab_wxs_gdc_realn.bam 39582805913 BAM harmonized CPTAC3 8f3b10aa-b7e2-4644-a404-d794bfa5df85 a4fc131d8e7fd835570ccb30bc0fbb26 {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal"} -C3L-04027.WXS.T C3L-04027 PDA WXS tumor CPT0254680006 CPT0254680006.WholeExome.RP-1303.bam 53620183971 BAM aligned CPTAC3 5516f2ce-56b6-48fb-94b9-6b4405d79641 5f093d075c30f9dd377c28e13213458f {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04027.WXS.T.hg38 C3L-04027 PDA WXS tumor CPT0254680006 15c31aed-f331-407a-b9c9-6f7b71981967_wxs_gdc_realn.bam 73422793671 BAM harmonized CPTAC3 c81b0225-b444-4e83-b10b-deab390d82d9 6ebdcf2c151f5ae76c6ff0119ef5dfb0 {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor"} -C3L-04031.MethArray.Green.A C3L-04031 LUAD Methylation_Array tissue_normal CPT0231570006 203561620040_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 808ccbaf-2e80-4761-9120-a04ebe13dbd0 f27798609c6b058ae2ff1bfdc0e65660 {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.MethArray.Green.T C3L-04031 LUAD Methylation_Array tumor CPT0231560006 203561620077_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6a4a7cb4-5e17-429c-b086-6f7f31a25776 20a64bbac1d875b76eab6a846155f3b6 {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor"} -C3L-04031.MethArray.Red.A C3L-04031 LUAD Methylation_Array tissue_normal CPT0231570006 203561620040_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 a3e7711e-f5ad-4407-94a7-54eb8d26eb54 bc05664db47ab87e5147581f4780af1f {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.MethArray.Red.T C3L-04031 LUAD Methylation_Array tumor CPT0231560006 203561620077_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 5207521a-02c8-4f04-9f19-39a34421ff9e c69e6e47601934d40334de0359ddc10f {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor"} -C3L-04031.miRNA-Seq.A.hg38 C3L-04031 LUAD miRNA-Seq tissue_normal CPT0231570009 e5595e5e-cba5-43d2-b94c-a55116af1be5_mirnaseq_gdc_realn.bam 188722329 BAM harmonized CPTAC3 6fd0c3c1-1429-4b94-8137-6dc80fb66420 81ead90b7d3acba02fca30599ce40306 {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.miRNA-Seq.S44_L005_R1.A C3L-04031 LUAD miRNA-Seq tissue_normal CPT0231570009 190722_UNC31-K00269_0234_AH7VGTBBXY_TGACCA_S44_L005_R1_001.unaln.bam 167606446 BAM S44_L005_R1 unaligned CPTAC3 fbd76841-776c-4d08-a412-2abb6d7792d7 dad2767003299d7c3619a0ff8ac29b37 {"aliquot_tag": "ALQ_85f88e1b", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.miRNA-Seq.S47_L004_R1.T C3L-04031 LUAD miRNA-Seq tumor CPT0231560009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTAGCT_S47_L004_R1_001.unaln.bam 254790091 BAM S47_L004_R1 unaligned CPTAC3 d79fd4e1-0ced-4969-b340-3aca62523081 eb2df97c7928d67bade9d289df59cc0b {"aliquot_tag": "ALQ_b898a7ab", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04031.miRNA-Seq.T.hg38 C3L-04031 LUAD miRNA-Seq tumor CPT0231560009 e5436ff8-2f6c-4793-89a8-635e0b890f9a_mirnaseq_gdc_realn.bam 278810527 BAM harmonized CPTAC3 962c8f8e-3f6f-4197-b19a-f7b0c774df11 9fae290555e756c04917fcea44fe88ac {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor"} -C3L-04031.RNA-Seq.chimeric.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.chimeric.gdc_realn.bam 32389701 BAM chimeric harmonized CPTAC3 d32ec039-4598-4052-96fd-9ab145c31d79 7ab35444e579d6e6609107ce78f748cb {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.RNA-Seq.chimeric.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.chimeric.gdc_realn.bam 38582937 BAM chimeric harmonized CPTAC3 2ed3fd49-05b0-4b5d-a873-cf4e02733138 3dcecdb779c816fc98f3f5d2a41aef7a {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor"} -C3L-04031.RNA-Seq.genomic.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.genomic.gdc_realn.bam 12296855433 BAM genomic harmonized CPTAC3 7a1e9d59-ad78-4abf-bae0-3632dc194b1a 5af26076ca72124071c1e0d35fda0898 {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.RNA-Seq.genomic.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.genomic.gdc_realn.bam 10626828053 BAM genomic harmonized CPTAC3 b707cdea-b93f-41d9-885a-4ae3b4a0db17 86093bf64936f2ebe7548ba802cbe9b8 {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor"} -C3L-04031.RNA-Seq.S18_L005_R1.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3896751344 FASTQ S18_L005_R1 unaligned CPTAC3 67545b35-6742-4f5c-9ef2-2ec80f0d27bd e74a0249068045e0873a14a1528a085f {"aliquot_tag": "ALQ_b898a7ab", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04031.RNA-Seq.S18_L005_R2.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 4489910121 FASTQ S18_L005_R2 unaligned CPTAC3 f71f9ac2-aa7f-445c-93b5-fb2b4f45fc8a 1016680bd06c29057bbd8ee2f04c605c {"aliquot_tag": "ALQ_b898a7ab", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04031.RNA-Seq.S24_L006_R1.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R1_001.fastq.gz 3943143348 FASTQ S24_L006_R1 unaligned CPTAC3 4badec9a-98c7-43fc-8dfa-828927ffa92e 2706548f013b47186678f9c90c7d6906 {"aliquot_tag": "ALQ_85f88e1b", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.RNA-Seq.S24_L006_R2.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R2_001.fastq.gz 4308999867 FASTQ S24_L006_R2 unaligned CPTAC3 4a2fa41f-d043-4dcc-b5a9-2ba1ad1ca9f5 a2125019bce29818b1c83a72d0a77bc1 {"aliquot_tag": "ALQ_85f88e1b", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.RNA-Seq.transcriptome.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.transcriptome.gdc_realn.bam 7661656193 BAM transcriptome harmonized CPTAC3 8edd6aed-4f17-4008-afee-4e17cd42d060 7b61a886125d1a22a581c1f972d8233e {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.RNA-Seq.transcriptome.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.transcriptome.gdc_realn.bam 9271311573 BAM transcriptome harmonized CPTAC3 6b41749c-93e3-4fa5-92ab-14c168198539 fd1ee9529ddcf084597dd8ca1922779d {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor"} -C3L-04031.WGS.N C3L-04031 LUAD WGS blood_normal CPT0231680002 CPT0231680002.WholeGenome.RP-1303.bam 54040017237 BAM aligned CPTAC3 8d0a290c-e3a9-4746-b947-d3be5c8870ef aea202502c21227aea70abbb13a242c2 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-04031.WGS.N.hg38 C3L-04031 LUAD WGS blood_normal CPT0231680002 24f3d373-0410-47e5-aa5f-bcbf375f4c9d_wgs_gdc_realn.bam 78339955639 BAM harmonized CPTAC3 213efcaf-8209-49ae-a5d3-66951067b715 2b4493ab1b8448146692fc309f1b47d6 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-04031.WGS.T C3L-04031 LUAD WGS tumor CPT0231560006 CPT0231560006.WholeGenome.RP-1303.bam 58069692834 BAM aligned CPTAC3 dac23237-a218-44b7-8466-00d06e2ec8b0 134187f28dbc7133464d8845b38ad61d {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor"} -C3L-04031.WGS.T.hg38 C3L-04031 LUAD WGS tumor CPT0231560006 dc4958b7-9590-4c7a-82b6-1498b49cdc91_wgs_gdc_realn.bam 85558042697 BAM harmonized CPTAC3 a3f7dddf-74ac-484c-952c-c9eb04761f55 2feb97852e14bb87d6e61d61e9827bb3 {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor"} -C3L-04031.WXS.A C3L-04031 LUAD WXS tissue_normal CPT0231570006 CPT0231570006.WholeExome.RP-1303.bam 19239991472 BAM aligned CPTAC3 691f578c-546d-40a0-9246-a886fb975831 842a58483d40748ff5653dfe47f15743 {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.WXS.A.hg38 C3L-04031 LUAD WXS tissue_normal CPT0231570006 4c5e15c2-2065-40bd-83ac-3277ed122be5_wxs_gdc_realn.bam 26678694587 BAM harmonized CPTAC3 cb6294f7-d57f-48ea-aec5-881310d5eb60 f752e39e982aaba2345e20ce59f33d47 {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04031.WXS.N C3L-04031 LUAD WXS blood_normal CPT0231680002 CPT0231680002.WholeExome.RP-1303.bam 31186056053 BAM aligned CPTAC3 a2fad5e4-79c6-4502-9faa-62a3ecef1147 e38ff77d9be31bd46a21cbd695dde6f0 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-04031.WXS.N.hg38 C3L-04031 LUAD WXS blood_normal CPT0231680002 24f3d373-0410-47e5-aa5f-bcbf375f4c9d_wxs_gdc_realn.bam 42972708622 BAM harmonized CPTAC3 d052c89e-3678-4cfd-b6f9-a24b02981807 510de61a76d945116acb7a871fd51741 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-04031.WXS.T C3L-04031 LUAD WXS tumor CPT0231560006 CPT0231560006.WholeExome.RP-1303.bam 25469289541 BAM aligned CPTAC3 6685835c-e93a-481b-995e-8a7405f2c22b b12f82725e5e3c38b236b99d2955027c {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor"} -C3L-04031.WXS.T.hg38 C3L-04031 LUAD WXS tumor CPT0231560006 dc4958b7-9590-4c7a-82b6-1498b49cdc91_wxs_gdc_realn.bam 35545908335 BAM harmonized CPTAC3 30381c04-de06-4c6a-9a59-c2842eb6a467 f0ea5a00254c622ae166c291854eac72 {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor"} -C3L-04033.MethArray.Green.A C3L-04033 LUAD Methylation_Array tissue_normal CPT0231410006 203561450023_R02C01_Grn.idat 13676223 IDAT Green NA CPTAC3 c0a71ada-3c56-481c-b78b-467a3022b58b dbd933db61cc58559cefa65631f8b5a5 {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.MethArray.Green.T C3L-04033 LUAD Methylation_Array tumor CPT0231350007 203561620085_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 244bdd5a-7076-44d7-a9b6-e5817ee4d901 d56cc12847c9b9aa1d4180ed76fb5fa2 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor"} -C3L-04033.MethArray.Red.A C3L-04033 LUAD Methylation_Array tissue_normal CPT0231410006 203561450023_R02C01_Red.idat 13676223 IDAT Red NA CPTAC3 7babbddb-b98c-4b20-9f50-45d7c14157dc 787a6b003931f954f7d3c55915a236f3 {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.MethArray.Red.T C3L-04033 LUAD Methylation_Array tumor CPT0231350007 203561620085_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 c7153ed4-6a97-46d9-8f70-bdda1aac6ccd d947b44baaaf95f56934f5a32934f47b {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor"} -C3L-04033.miRNA-Seq.A.hg38 C3L-04033 LUAD miRNA-Seq tissue_normal CPT0231410009 518fe22c-b2ec-4587-858b-71ef7698fb53_mirnaseq_gdc_realn.bam 204225693 BAM harmonized CPTAC3 c02b1b7d-6c21-41a3-acaf-1d93aef81ed3 7f871770c8c4dd7044fd42cbade01096 {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.miRNA-Seq.S31_L004_R1.T C3L-04033 LUAD miRNA-Seq tumor CPT0231350010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGGAAT_S31_L004_R1_001.unaln.bam 325214854 BAM S31_L004_R1 unaligned CPTAC3 699ccaf0-c37d-40ed-b04e-ecf1b9139059 59b817e958171c59a71c7214b3226b71 {"aliquot_tag": "ALQ_49a6b783", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04033.miRNA-Seq.S43_L005_R1.A C3L-04033 LUAD miRNA-Seq tissue_normal CPT0231410009 190722_UNC31-K00269_0234_AH7VGTBBXY_TTAGGC_S43_L005_R1_001.unaln.bam 178042423 BAM S43_L005_R1 unaligned CPTAC3 431ca8e3-3b43-448f-99c8-5dbf1baa0fae 424f721463e35a100dcddb7906186cf8 {"aliquot_tag": "ALQ_c1e4a81e", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.miRNA-Seq.T.hg38 C3L-04033 LUAD miRNA-Seq tumor CPT0231350010 93079195-edf4-4cee-89f2-d79f0d37885c_mirnaseq_gdc_realn.bam 356066021 BAM harmonized CPTAC3 9b40edc8-082f-41cd-b724-a1e5a718887d 5aa5d9e40fafc87b13f659bedc1e8d3e {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor"} -C3L-04033.RNA-Seq.chimeric.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.chimeric.gdc_realn.bam 35038477 BAM chimeric harmonized CPTAC3 703f86c2-0877-42a8-accf-3c21440e2019 170b5dcd1e43e5d16779c51ad1941a0c {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.RNA-Seq.chimeric.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.chimeric.gdc_realn.bam 44740598 BAM chimeric harmonized CPTAC3 2f74eb92-9129-4371-96be-186fafe93bcc fbf14c82a3d94cc463d57ed5a8c3248b {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor"} -C3L-04033.RNA-Seq.genomic.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.genomic.gdc_realn.bam 9516878293 BAM genomic harmonized CPTAC3 86edb82c-bbe3-406b-8832-2a059b876e83 db5b5cf51b0d5b76d6150c551741b931 {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.RNA-Seq.genomic.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.genomic.gdc_realn.bam 12431704962 BAM genomic harmonized CPTAC3 d38664b0-a95a-4dba-b098-a68d364b8208 94d6ab0223bd014a2a3bbef18fb9d7ac {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor"} -C3L-04033.RNA-Seq.S19_L005_R1.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R1_001.fastq.gz 4616701026 FASTQ S19_L005_R1 unaligned CPTAC3 20b3406b-826a-46d1-a8e6-55e7c9431014 000f7905d6a7b230d2698fc83b77d1c1 {"aliquot_tag": "ALQ_49a6b783", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04033.RNA-Seq.S19_L005_R2.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R2_001.fastq.gz 5366115132 FASTQ S19_L005_R2 unaligned CPTAC3 a865155a-4759-416f-a3d1-366b0397caf2 b37b3dc19da0ff70f49b105f93c91b4b {"aliquot_tag": "ALQ_49a6b783", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04033.RNA-Seq.S21_L006_R1.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R1_001.fastq.gz 3579229932 FASTQ S21_L006_R1 unaligned CPTAC3 6f380e61-6b00-4376-87c6-6813ecbe4e78 8eee1e451d0e80513de24722e21427a2 {"aliquot_tag": "ALQ_c1e4a81e", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.RNA-Seq.S21_L006_R2.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R2_001.fastq.gz 3981553315 FASTQ S21_L006_R2 unaligned CPTAC3 e8886846-49e3-430a-bcd5-7f40e1cc1523 89351b8f682a9d1850cb1290bea181b6 {"aliquot_tag": "ALQ_c1e4a81e", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.RNA-Seq.transcriptome.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.transcriptome.gdc_realn.bam 7284989532 BAM transcriptome harmonized CPTAC3 96191992-1190-4fbb-b6a3-64400d4a537b e6dd35a73311c50d8eb385021e1efba2 {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.RNA-Seq.transcriptome.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.transcriptome.gdc_realn.bam 10813366621 BAM transcriptome harmonized CPTAC3 2063299b-df72-4322-9710-6c947809f9c1 a735d1e801a4ebc03d276834a127e687 {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor"} -C3L-04033.WGS.N C3L-04033 LUAD WGS blood_normal CPT0231510002 CPT0231510002.WholeGenome.RP-1303.bam 74862218332 BAM aligned CPTAC3 907076ab-2aca-49bf-8284-32fe5f5f4c69 4d33c4cd54c344e01cc3b7c2acd7eb7d {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal"} -C3L-04033.WGS.N.hg38 C3L-04033 LUAD WGS blood_normal CPT0231510002 dafd7df7-0e5d-4241-bf8c-c487a3c6f039_wgs_gdc_realn.bam 110484584784 BAM harmonized CPTAC3 d518c8a1-808a-4417-b48b-154524b0e81d 6c3ee2c74f2324fb60a345271868c351 {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal"} -C3L-04033.WGS.T C3L-04033 LUAD WGS tumor CPT0231350007 CPT0231350007.WholeGenome.RP-1303.bam 63746393683 BAM aligned CPTAC3 9c5711ec-7fd1-466d-9be7-001e6bd51567 b1e5a41254b025a1c21393f6aa5f5e81 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor"} -C3L-04033.WGS.T.hg38 C3L-04033 LUAD WGS tumor CPT0231350007 00faa3b4-b35a-4c70-97c9-702f7ae63b7c_wgs_gdc_realn.bam 93301765074 BAM harmonized CPTAC3 a9a5abaa-9e41-4b32-ad7c-8b587b7b76d5 0f0212fad0f1a029ff4a427948dcc02b {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor"} -C3L-04033.WXS.A C3L-04033 LUAD WXS tissue_normal CPT0231410006 CPT0231410006.WholeExome.RP-1303.bam 19539380157 BAM aligned CPTAC3 ea4273df-d908-46db-8f17-31ea80b9cb97 7de619093d0d93748e6d8ea1fd3c0e42 {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.WXS.A.hg38 C3L-04033 LUAD WXS tissue_normal CPT0231410006 3f1b2b9f-75b5-4da2-8d16-e664af5d5897_wxs_gdc_realn.bam 27080277143 BAM harmonized CPTAC3 68b7c2a4-b1af-409b-b656-df5565fe8880 aa7e43c17016da229b809dd6816a490f {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04033.WXS.N C3L-04033 LUAD WXS blood_normal CPT0231510002 CPT0231510002.WholeExome.RP-1303.bam 27695366421 BAM aligned CPTAC3 453dc29b-7b7f-4cd9-8869-deb49019bcb9 92d0b868d983b6ba3fbc4ff1e531629b {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal"} -C3L-04033.WXS.N.hg38 C3L-04033 LUAD WXS blood_normal CPT0231510002 dafd7df7-0e5d-4241-bf8c-c487a3c6f039_wxs_gdc_realn.bam 38260891142 BAM harmonized CPTAC3 ebc08f52-ea73-4d4d-a6b5-5ad7099aa91c 43141c4673fefb1e88e7feb44d2ffd78 {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal"} -C3L-04033.WXS.T C3L-04033 LUAD WXS tumor CPT0231350007 CPT0231350007.WholeExome.RP-1303.bam 23825046229 BAM aligned CPTAC3 1d1aab1a-514c-4526-b34a-339f4eab3e91 f749d3182efb8e3309e0aa600ff567b7 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor"} -C3L-04033.WXS.T.hg38 C3L-04033 LUAD WXS tumor CPT0231350007 00faa3b4-b35a-4c70-97c9-702f7ae63b7c_wxs_gdc_realn.bam 33474358831 BAM harmonized CPTAC3 a32e9ffa-afdf-4a6e-aa3c-f553b04b48d9 41d593aa524b044e9fe721979f6ddab8 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor"} -C3L-04036.MethArray.Green.T C3L-04036 GBM Methylation_Array tumor CPT0228100006 204367490056_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 adb639af-6803-4a7a-961f-ac41a342bbc2 573de43df98665329303a89633da0cc8 {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor"} -C3L-04036.MethArray.Red.T C3L-04036 GBM Methylation_Array tumor CPT0228100006 204367490056_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 fc1c77e5-7703-4100-b663-c11561492241 351825c81bee656f396fffdceb28ceed {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor"} -C3L-04036.miRNA-Seq.S23_L001_R1.T C3L-04036 GBM miRNA-Seq tumor CPT0228100013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 231628336 BAM S23_L001_R1 unaligned CPTAC3 0cb1fa8c-049f-4fb9-a6b0-14caf66a4c89 7b4c3cf3366bb40a18a2c73e28377009 {"aliquot_tag": "ALQ_cb58d0f", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04036.miRNA-Seq.T.hg38 C3L-04036 GBM miRNA-Seq tumor CPT0228100013 4a878582-42a5-4ea9-aa7f-92e81a823fb5_mirnaseq_gdc_realn.bam 261066376 BAM harmonized CPTAC3 9fe7adc5-5c84-4e2a-b9c8-c71e924a05d5 ec212574e36605b4c363dbc0c4273913 {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor"} -C3L-04036.RNA-Seq.chimeric.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.chimeric.gdc_realn.bam 31121772 BAM chimeric harmonized CPTAC3 669eb8b1-6af8-4691-b172-e0e764844311 b768a97ae115e1d166b5a1b599079ede {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor"} -C3L-04036.RNA-Seq.genomic.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.genomic.gdc_realn.bam 8947107855 BAM genomic harmonized CPTAC3 13eff63b-b954-4bfe-b6eb-86989912ea35 714e45c49fbe9ea43150eea542000cae {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor"} -C3L-04036.RNA-Seq.S18_L005_R1.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R1_001.fastq.gz 4300016107 FASTQ S18_L005_R1 unaligned CPTAC3 4ad5e390-ef2e-4370-a0fa-de8d0c112f8b 2e4c2075b60020d26b10507eaa4e17f4 {"aliquot_tag": "ALQ_cb58d0f", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04036.RNA-Seq.S18_L005_R2.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ S18_L005_R2 unaligned CPTAC3 180a4380-addf-4a1a-98bd-e75a7b5982da bfe895f8895e2dda867559468bd276a4 {"aliquot_tag": "ALQ_cb58d0f", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04036.RNA-Seq.transcriptome.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.transcriptome.gdc_realn.bam 11357149863 BAM transcriptome harmonized CPTAC3 4011bdd2-cf0a-4255-83f3-e77b6a9ac24f 84c15f8f39281aed035d86aab8463c58 {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor"} -C3L-04036.WGS.N C3L-04036 GBM WGS blood_normal CPT0228200002 CPT0228200002.WholeGenome.RP-2158.bam 27954573868 BAM aligned CPTAC3 4614d7be-dcff-4e9a-b51a-2a14ca2a0707 43d0a8587a3e8c3f8f943083729c2304 {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal"} -C3L-04036.WGS.N.hg38 C3L-04036 GBM WGS blood_normal CPT0228200002 d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wgs_gdc_realn.bam 84600612482 BAM harmonized CPTAC3 5cc05bff-59ba-46d5-a94b-f2ce494057d0 c7043a90936f5152ce75c5999e5eed82 {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal"} -C3L-04036.WGS.T C3L-04036 GBM WGS tumor CPT0228100006 CPT0228100006.WholeGenome.RP-2158.bam 26788664741 BAM aligned CPTAC3 ea0a6535-4d05-4a3f-b835-1431971ebd4d d3e14718e545057ae4380f06ccb1d4da {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor"} -C3L-04036.WGS.T.hg38 C3L-04036 GBM WGS tumor CPT0228100006 cf7c8668-776a-401c-8507-aeb41e890b44_wgs_gdc_realn.bam 78770530553 BAM harmonized CPTAC3 38dbe442-1dc6-4904-a03f-2d4d7fd6a845 4d2d3cb33789d093c427cda3cfa84cd7 {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor"} -C3L-04036.WXS.N C3L-04036 GBM WXS blood_normal CPT0228200002 CPT0228200002.WholeExome.RP-1303.bam 24314988168 BAM aligned CPTAC3 ceb21f60-93ac-4f7e-a303-770b73fbc591 2b4cebe63a93f43713f10792ae618c8b {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal"} -C3L-04036.WXS.N.hg38 C3L-04036 GBM WXS blood_normal CPT0228200002 d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wxs_gdc_realn.bam 32993694360 BAM harmonized CPTAC3 af95917f-66d4-4f45-a029-744682ad5cfd 1d92fbcac71cbc1c80d2259ca7e9a5d2 {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal"} -C3L-04036.WXS.T C3L-04036 GBM WXS tumor CPT0228100006 CPT0228100006.WholeExome.RP-1303.bam 22411527930 BAM aligned CPTAC3 e451386b-5d46-4f36-ab71-9e929e867659 77b0a1392dcb36bbda35c4a2c5ccd078 {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor"} -C3L-04036.WXS.T.hg38 C3L-04036 GBM WXS tumor CPT0228100006 cf7c8668-776a-401c-8507-aeb41e890b44_wxs_gdc_realn.bam 31650565850 BAM harmonized CPTAC3 494a854e-4132-41ed-a5a9-4ccdeda2fb59 b07a7648a7f8cdacd45296b5dc97186c {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor"} -C3L-04037.MethArray.Green.T C3L-04037 LUAD Methylation_Array tumor CPT0229540007 203561450114_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dadbd758-9fb5-4aca-84cb-9d77c673053e 4531b3eabcdb9649de1b4556e155a247 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor"} -C3L-04037.MethArray.Red.T C3L-04037 LUAD Methylation_Array tumor CPT0229540007 203561450114_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 29789a48-78fb-4141-9f50-3060d5a92256 5df92df2bac1f888ec93f8d096a60047 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor"} -C3L-04037.miRNA-Seq.A.hg38 C3L-04037 LUAD miRNA-Seq tissue_normal CPT0229570006 226aab75-5af5-4c0f-a81b-633e3f5afca4_mirnaseq_gdc_realn.bam 202031039 BAM harmonized CPTAC3 94660b34-5aca-489d-9f4a-2973c0f489b7 ceb002f26b85381c41a176198f3d09f8 {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04037.miRNA-Seq.S18_L007_R1.A C3L-04037 LUAD miRNA-Seq tissue_normal CPT0229570006 190722_UNC31-K00269_0234_AH7VGTBBXY_CGTACG_S18_L007_R1_001.unaln.bam 180452836 BAM S18_L007_R1 unaligned CPTAC3 ea2d884b-fc85-4da5-92e1-16bcf2ef3bd4 87d397bcfba3869093d6940477002cc7 {"aliquot_tag": "ALQ_ea02dd73", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04037.miRNA-Seq.S30_L004_R1.T C3L-04037 LUAD miRNA-Seq tumor CPT0229540010 190722_UNC31-K00269_0234_AH7VGTBBXY_CCAACA_S30_L004_R1_001.unaln.bam 182160196 BAM S30_L004_R1 unaligned CPTAC3 40f958ec-ca43-439c-a0a2-7b67b6b9015b 42e9c73e63399f9bbceb392b6cebdd35 {"aliquot_tag": "ALQ_5dda33d7", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04037.miRNA-Seq.T.hg38 C3L-04037 LUAD miRNA-Seq tumor CPT0229540010 557feab8-8acc-4503-9739-f58117e798f2_mirnaseq_gdc_realn.bam 201032117 BAM harmonized CPTAC3 58cf4c63-c2b1-4fd3-a67f-9530f6d3f754 7feabba4077d9ec29c71ecf317a0ffbe {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor"} -C3L-04037.RNA-Seq.chimeric.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.chimeric.gdc_realn.bam 21962025 BAM chimeric harmonized CPTAC3 56a05fd4-9b5f-4a7b-ae17-e7c1739ddfeb 9f228a83c2ea39a185a1a5b73ad2b8bc {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04037.RNA-Seq.chimeric.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.chimeric.gdc_realn.bam 37194066 BAM chimeric harmonized CPTAC3 3bff7fb1-3f4a-4778-89e6-7f0046322bf5 6bb3336927c7cddda3aaa7d3b1237409 {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor"} -C3L-04037.RNA-Seq.genomic.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.genomic.gdc_realn.bam 10055068882 BAM genomic harmonized CPTAC3 c481531e-8501-4116-9841-81192d5c47c2 d0a5e4bcac00397002b40b9241ff1328 {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04037.RNA-Seq.genomic.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.genomic.gdc_realn.bam 13331768144 BAM genomic harmonized CPTAC3 09415abc-854f-42cf-b367-5d9cce12f97f 96fa6a585d8b2c3b39f999d4a8c5d905 {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor"} -C3L-04037.RNA-Seq.S24_L006_R1.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R1_001.fastq.gz 4443614863 FASTQ S24_L006_R1 unaligned CPTAC3 20ce4060-9f88-4c4a-8cd6-1686f5924208 0162ce9d13d37f37514dafee2190deb2 {"aliquot_tag": "ALQ_5dda33d7", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04037.RNA-Seq.S24_L006_R2.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R2_001.fastq.gz 4973554677 FASTQ S24_L006_R2 unaligned CPTAC3 1cdf4feb-6bae-499f-bc7c-c40ceb20f771 f1a2a5a7f2cc20195a046af524d06b00 {"aliquot_tag": "ALQ_5dda33d7", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04037.RNA-Seq.S28_L007_R1.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R1_001.fastq.gz 3456382054 FASTQ S28_L007_R1 unaligned CPTAC3 f4b5d44d-2940-459d-9c29-ed2e26f03a5f 0fff04d854f774a74f6a1a189148275c {"aliquot_tag": "ALQ_ea02dd73", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04037.RNA-Seq.S28_L007_R2.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R2_001.fastq.gz 3796085160 FASTQ S28_L007_R2 unaligned CPTAC3 16095216-8046-4e3f-a7de-1846f17d9a36 4c12a88fc79b4b6a935d3012771a9a93 {"aliquot_tag": "ALQ_ea02dd73", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04037.RNA-Seq.transcriptome.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.transcriptome.gdc_realn.bam 7520087024 BAM transcriptome harmonized CPTAC3 d83f7e17-c5a0-4e5e-919e-bd046130c1cb fb117a628ad831ab5740f25124dee9f4 {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04037.RNA-Seq.transcriptome.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.transcriptome.gdc_realn.bam 13261306906 BAM transcriptome harmonized CPTAC3 f9ddbcab-c739-4350-9e74-fc0e32dfff05 33d43476e21e6b12611c0cae9d019bee {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor"} -C3L-04037.WGS.N C3L-04037 LUAD WGS blood_normal CPT0229680002 CPT0229680002.WholeGenome.RP-1303.bam 66335745227 BAM aligned CPTAC3 a2dccb7c-d270-4f83-94e1-f1f7b81c8caf 1f9144cfa4ba1d512afabc9078bcd1d9 {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal"} -C3L-04037.WGS.N.hg38 C3L-04037 LUAD WGS blood_normal CPT0229680002 4b9d7cb8-05e7-499d-838a-fdf63a4a93ad_wgs_gdc_realn.bam 97452630425 BAM harmonized CPTAC3 968471ea-9f9c-41c3-af74-b7bf3b22cd75 e4ec89aa2a60cd6dcc8ecadb00a6ab95 {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal"} -C3L-04037.WGS.T C3L-04037 LUAD WGS tumor CPT0229540007 CPT0229540007.WholeGenome.RP-1303.bam 75274750636 BAM aligned CPTAC3 60d3a2c3-06d6-4827-a4d9-1d114d965fd0 59ae444d9da31a9e9af59afb640ac8f1 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor"} -C3L-04037.WGS.T.hg38 C3L-04037 LUAD WGS tumor CPT0229540007 2ed956a8-b3a3-41e2-ade8-aff5e3eae792_wgs_gdc_realn.bam 109398264105 BAM harmonized CPTAC3 50a5c027-3fb0-4ab1-802d-0d0aa8991ee5 8db9a396d1ba36499cabc9f656ed2cc7 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor"} -C3L-04037.WXS.N C3L-04037 LUAD WXS blood_normal CPT0229680002 CPT0229680002.WholeExome.RP-1303.bam 32853460944 BAM aligned CPTAC3 aed55ad1-14ac-4eed-a1b9-3254482d0cb4 48fb0699b8e322ea59c1657336167dfb {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal"} -C3L-04037.WXS.N.hg38 C3L-04037 LUAD WXS blood_normal CPT0229680002 4b9d7cb8-05e7-499d-838a-fdf63a4a93ad_wxs_gdc_realn.bam 45174368924 BAM harmonized CPTAC3 875d94fc-56c9-464a-b2c5-ae1fda9beddd 0b6e329802afb780a06a933a7f2e744c {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal"} -C3L-04037.WXS.T C3L-04037 LUAD WXS tumor CPT0229540007 CPT0229540007.WholeExome.RP-1303.bam 26050826944 BAM aligned CPTAC3 cc0a363c-33a6-4f84-9cba-9589138bb5c9 2047f44dab74f9756cd44324766b3f85 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor"} -C3L-04037.WXS.T.hg38 C3L-04037 LUAD WXS tumor CPT0229540007 2ed956a8-b3a3-41e2-ade8-aff5e3eae792_wxs_gdc_realn.bam 35933577035 BAM harmonized CPTAC3 d742bb94-3ee9-4860-b5a7-4cf3a8072b7d 779c9a4704c7763a12608f5380ca72aa {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor"} -C3L-04038.MethArray.Green.T C3L-04038 GBM Methylation_Array tumor CPT0256720007 204372030090_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 bf66a9f9-c721-4bb6-aa0c-21ca6574b2ef 87197b28d1920d0d095eec3820cd80b8 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor"} -C3L-04038.MethArray.Red.T C3L-04038 GBM Methylation_Array tumor CPT0256720007 204372030090_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 73a53eb1-7efb-4085-8b36-f1d074197b16 698ce1b148b413adac778782648860b5 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor"} -C3L-04038.miRNA-Seq.S36_L002_R1.T C3L-04038 GBM miRNA-Seq tumor CPT0256720010 200403_UNC31-K00269_0274_AHCF7GBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 178241410 BAM S36_L002_R1 unaligned CPTAC3 c3536cfa-1998-4132-ba94-0f410cc2ca04 026e29295b9954392fbf04bd8deb4fa0 {"aliquot_tag": "ALQ_63df1e8c", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04038.miRNA-Seq.T.hg38 C3L-04038 GBM miRNA-Seq tumor CPT0256720010 7dd51466-f17c-4da6-afd8-5bfb2986eccc_mirnaseq_gdc_realn.bam 198964432 BAM harmonized CPTAC3 2eb20cbb-3808-4d16-83bb-f7e01ca86189 3daa578b646dcf0e99a2486578370ec8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor"} -C3L-04038.RNA-Seq.chimeric.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.chimeric.gdc_realn.bam 207873040 BAM chimeric harmonized CPTAC3 dd032e6b-11b7-4318-a6d6-54710b880c68 e85a8383afc6c1212b0d593406a190d8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor"} -C3L-04038.RNA-Seq.genomic.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.genomic.gdc_realn.bam 7519214609 BAM genomic harmonized CPTAC3 62756f36-2cda-4421-9915-60ed3185c0cf ef357d603f49d585c51e73c9dd236db8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor"} -C3L-04038.RNA-Seq.S4_L001_R1.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ S4_L001_R1 unaligned CPTAC3 4b1047c2-0ebd-425a-bbb5-558034d20ee0 bb8a984b5978f1dfd65d46ddd4302b12 {"aliquot_tag": "ALQ_63df1e8c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04038.RNA-Seq.S4_L001_R2.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ S4_L001_R2 unaligned CPTAC3 432fbf58-dc9c-45c4-aad4-ccb291b8c512 bae98b409546c90f3f354cab2a324e21 {"aliquot_tag": "ALQ_63df1e8c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04038.RNA-Seq.transcriptome.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.transcriptome.gdc_realn.bam 6975839557 BAM transcriptome harmonized CPTAC3 33ae4a94-d011-41f5-aac2-9d7729a89824 4d71eec19b49f3a5ba3ed24141ad3bb8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor"} -C3L-04038.WGS.N C3L-04038 GBM WGS blood_normal CPT0256820002 CPT0256820002.WholeGenome.RP-2158.bam 25899155371 BAM aligned CPTAC3 e05914be-d79b-4d2a-943d-e2ffa3f8f761 f768b769ad4bcea9b24a17d14078c8c6 {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal"} -C3L-04038.WGS.N.hg38 C3L-04038 GBM WGS blood_normal CPT0256820002 e5fa0684-79a6-4278-a7cf-29880b9ce537_wgs_gdc_realn.bam 78286150186 BAM harmonized CPTAC3 21d14944-67f4-4d0c-bfd5-ab7986f4c4c5 8dcc84c678d031574684437ad13a9c1e {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal"} -C3L-04038.WGS.T C3L-04038 GBM WGS tumor CPT0256720007 CPT0256720007.WholeGenome.RP-2158.bam 28044770829 BAM aligned CPTAC3 80ca3087-4bf6-4b8c-8f8e-58e43b23a65a c74534c6baced44d6f40d2e258cea9e6 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor"} -C3L-04038.WGS.T.hg38 C3L-04038 GBM WGS tumor CPT0256720007 17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wgs_gdc_realn.bam 82873631851 BAM harmonized CPTAC3 9b5bfea2-570b-4285-85db-df3e57f7fbf6 888b3df7fd07829ee56d851c29b9f05c {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor"} -C3L-04038.WXS.N C3L-04038 GBM WXS blood_normal CPT0256820002 CPT0256820002.WholeExome.RP-1303.bam 26276419705 BAM aligned CPTAC3 d431b988-27da-45a1-b85a-7e412e19f42a c9f091e04d95486749a2fa5812bbacf3 {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal"} -C3L-04038.WXS.N.hg38 C3L-04038 GBM WXS blood_normal CPT0256820002 e5fa0684-79a6-4278-a7cf-29880b9ce537_wxs_gdc_realn.bam 36239960295 BAM harmonized CPTAC3 d68ef551-045b-4c28-991c-54176b2ef8b2 c0d87c0314be02793e219b7a780e0db7 {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal"} -C3L-04038.WXS.T C3L-04038 GBM WXS tumor CPT0256720007 CPT0256720007.WholeExome.RP-1303.bam 20717451239 BAM aligned CPTAC3 249c70cd-cfd6-49b5-9c77-33b54ab3004e ac80d75dac283821d7c82361048f8f13 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor"} -C3L-04038.WXS.T.hg38 C3L-04038 GBM WXS tumor CPT0256720007 17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wxs_gdc_realn.bam 29805069310 BAM harmonized CPTAC3 593cbb4d-9753-427f-9bca-da27067a715b dd7b117882a9821a50b309cdb23942fe {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor"} -C3L-04040.MethArray.Green.T C3L-04040 LUAD Methylation_Array tumor CPT0232060007 203561450099_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8548dfe6-86b6-4a60-b533-25a67c025fc0 5a3f5fb1f78bdc2d849ad6ba26420a79 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor"} -C3L-04040.MethArray.Red.T C3L-04040 LUAD Methylation_Array tumor CPT0232060007 203561450099_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 408b4b68-6703-44b6-aee4-78bfdbd59773 8377f0c91819d61e445d2eeafec7ff0b {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor"} -C3L-04040.miRNA-Seq.S33_L004_R1.T C3L-04040 LUAD miRNA-Seq tumor CPT0232060010 190722_UNC31-K00269_0234_AH7VGTBBXY_CTCAGA_S33_L004_R1_001.unaln.bam 195919013 BAM S33_L004_R1 unaligned CPTAC3 3848f7e6-5630-4da2-80e2-95dc378b59f2 fbdcc60cbecfd47301b615d526ece895 {"aliquot_tag": "ALQ_b97aa560", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04040.miRNA-Seq.T.hg38 C3L-04040 LUAD miRNA-Seq tumor CPT0232060010 3b5d4942-68e9-43d6-8f2d-969f14c1fbfd_mirnaseq_gdc_realn.bam 216073600 BAM harmonized CPTAC3 9b780344-ac90-4b71-85ec-0934335f5c68 8d2da8fe56c4615800d13d4762b6fc0f {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor"} -C3L-04040.RNA-Seq.chimeric.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.chimeric.gdc_realn.bam 31871501 BAM chimeric harmonized CPTAC3 6b84db1f-80e0-4d5f-9d69-dddd445f0979 2e23b4ebecceea6a1d7ef5604123935b {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor"} -C3L-04040.RNA-Seq.genomic.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.genomic.gdc_realn.bam 12029819325 BAM genomic harmonized CPTAC3 ea54302e-60f1-48c6-98ab-779bead38ae1 164bde4219c6482b6b7a3ffae1b80c8a {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor"} -C3L-04040.RNA-Seq.S20_L005_R1.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R1_001.fastq.gz 4182858994 FASTQ S20_L005_R1 unaligned CPTAC3 03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff cb6b31ddb5f5a3ea0a3374760d8fa1e7 {"aliquot_tag": "ALQ_b97aa560", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04040.RNA-Seq.S20_L005_R2.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R2_001.fastq.gz 4821163674 FASTQ S20_L005_R2 unaligned CPTAC3 5a047da7-59a1-41f5-9ec1-728f230c506b 56a7e45e4b07f77c1b3f34a44e3e9c4f {"aliquot_tag": "ALQ_b97aa560", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04040.RNA-Seq.transcriptome.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.transcriptome.gdc_realn.bam 9989857381 BAM transcriptome harmonized CPTAC3 4e04d662-f4ee-4f74-86b2-f9fafcd32899 65fdc04200a1efda61ebf0a26389c4f8 {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor"} -C3L-04040.WGS.N C3L-04040 LUAD WGS blood_normal CPT0232220002 CPT0232220002.WholeGenome.RP-1303.bam 75127227326 BAM aligned CPTAC3 16084dc4-83d6-4c1b-a93d-d648b0c7a84d aecfab551f658f7880cc9703f9157992 {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04040.WGS.N.hg38 C3L-04040 LUAD WGS blood_normal CPT0232220002 3125ce10-eeb2-4a71-9101-3576d527d1a7_wgs_gdc_realn.bam 110179630465 BAM harmonized CPTAC3 5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f dea63130391cee587bd0c07886d8a93d {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04040.WGS.T C3L-04040 LUAD WGS tumor CPT0232060007 CPT0232060007.WholeGenome.RP-1303.bam 78991614747 BAM aligned CPTAC3 8701800d-a7cc-498e-acdc-1455ea7b7ae9 c91bddf9515572a422065f202bbff18a {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor"} -C3L-04040.WGS.T.hg38 C3L-04040 LUAD WGS tumor CPT0232060007 f9d4fefb-3a1d-479f-a26f-bec43f5e2afc_wgs_gdc_realn.bam 115023520974 BAM harmonized CPTAC3 46922002-23c9-47e7-8119-036e1d14f8e8 a56eef2ecc4f4f41daf21cd299bab2e0 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor"} -C3L-04040.WXS.N C3L-04040 LUAD WXS blood_normal CPT0232220002 CPT0232220002.WholeExome.RP-1303.bam 28559558198 BAM aligned CPTAC3 c18b4120-5e10-418f-a423-4c44ce22fcad a452f6a15c12bb2014e8736718f236a4 {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04040.WXS.N.hg38 C3L-04040 LUAD WXS blood_normal CPT0232220002 3125ce10-eeb2-4a71-9101-3576d527d1a7_wxs_gdc_realn.bam 39530707118 BAM harmonized CPTAC3 c3663e14-867c-437c-8f19-6006b7f20f17 eb5f2583dd2756decf97bae1ce59a549 {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04040.WXS.T C3L-04040 LUAD WXS tumor CPT0232060007 CPT0232060007.WholeExome.RP-1303.bam 27178022178 BAM aligned CPTAC3 9f1cb7f3-d727-41d9-bab4-9e94b7a846e3 6a5df2ccbc910d06602b2b34a8b28eb0 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor"} -C3L-04040.WXS.T.hg38 C3L-04040 LUAD WXS tumor CPT0232060007 f9d4fefb-3a1d-479f-a26f-bec43f5e2afc_wxs_gdc_realn.bam 37737582526 BAM harmonized CPTAC3 edaaa44b-59b2-41d0-b63b-437908fb076e fe649927548d58da390060aa6cd83ee1 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor"} -C3L-04071.MethArray.Green.A C3L-04071 LSCC Methylation_Array tissue_normal CPT0221220006 203219650202_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 051f2557-d2cc-4ab1-85ed-ce6b4a604a15 f167e9f4de0722a7d6254669e57d304b {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.MethArray.Green.T C3L-04071 LSCC Methylation_Array tumor CPT0221200006 203220070171_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 77ae509e-80cb-422b-ae47-86ccf17ba587 1b4ab7476110fdf7c9e2a1414e84e6d4 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor"} -C3L-04071.MethArray.Red.A C3L-04071 LSCC Methylation_Array tissue_normal CPT0221220006 203219650202_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 03e59a5f-57d0-4878-8469-76fcab37eabc 3811d97427d526f3fb4cef9d3ad92572 {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.MethArray.Red.T C3L-04071 LSCC Methylation_Array tumor CPT0221200006 203220070171_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3bd3d84c-fcc7-488c-a0b7-29278303801c 2ff5c8de957d6be85028cae5ea3c3801 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor"} -C3L-04071.miRNA-Seq.A.hg38 C3L-04071 LSCC miRNA-Seq tissue_normal CPT0221220009 4d713bca-6bf5-44d4-a31b-ed6f4af6dc10_mirnaseq_gdc_realn.bam 251478846 BAM harmonized CPTAC3 cf700719-16ae-4210-825a-5e1b6c622ec7 cc1896c8469d1f5b56501c569eb6fb93 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.miRNA-Seq.S41_L004_R1.A C3L-04071 LSCC miRNA-Seq tissue_normal CPT0221220009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTTGA_S41_L004_R1_001.unaln.bam 231740708 BAM S41_L004_R1 unaligned CPTAC3 efab8414-b4b4-480b-876e-fee220d0ea99 240be32f5f7ad264b2cd68ec3ead6e94 {"aliquot_tag": "ALQ_9cb7314d", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.miRNA-Seq.S45_L002_R1.T C3L-04071 LSCC miRNA-Seq tumor CPT0221200009 190206_UNC31-K00269_0191_AH2WY5BBXY_TGACCA_S45_L002_R1_001.unaln.bam 156271157 BAM S45_L002_R1 unaligned CPTAC3 ee566f28-70ba-4e82-ad3a-7aa410560e07 292e1e75dd475be946f2c804f3c0123b {"aliquot_tag": "ALQ_e677622d", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04071.miRNA-Seq.T.hg38 C3L-04071 LSCC miRNA-Seq tumor CPT0221200009 4bf84c57-5998-4523-baba-060a37b8674f_mirnaseq_gdc_realn.bam 166820565 BAM harmonized CPTAC3 4cccdb42-fd1e-4c74-a4f5-13587558090f aaaf533f9a55f8e10eaaa1bf6a96e84e {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor"} -C3L-04071.RNA-Seq.chimeric.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.chimeric.gdc_realn.bam 107127253 BAM chimeric harmonized CPTAC3 2c134722-2869-46e9-8f0e-4273a47c1bfe b27c2779889c67ca3531c3adc9f05f44 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.RNA-Seq.chimeric.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.chimeric.gdc_realn.bam 143747850 BAM chimeric harmonized CPTAC3 24068f4b-ff56-4351-9dbf-c3aef829590d c745b8bccc3e42808dfb28db461b2452 {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor"} -C3L-04071.RNA-Seq.genomic.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.genomic.gdc_realn.bam 8076144383 BAM genomic harmonized CPTAC3 83ed5d65-013c-4fef-b84e-0c33b9a38f26 51eeb30ea510565839804171dc347926 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.RNA-Seq.genomic.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.genomic.gdc_realn.bam 15571520279 BAM genomic harmonized CPTAC3 fc8b2936-7478-441f-9f7d-fc12a4e93f5f c1be89da0ef09517ccfcf4205f304a90 {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor"} -C3L-04071.RNA-Seq.S12_L003_R1.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R1_001.fastq.gz 6951487565 FASTQ S12_L003_R1 unaligned CPTAC3 a558614c-7e6d-4b94-9755-9e0fa0b9901a 386e665a2cf395c7e693a61cd87f88b6 {"aliquot_tag": "ALQ_e677622d", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04071.RNA-Seq.S12_L003_R2.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R2_001.fastq.gz 7527528669 FASTQ S12_L003_R2 unaligned CPTAC3 b7cd0e96-3009-444e-b5ff-e339fdca5aa7 63fcc24f361e0f8a18190d52b7aba380 {"aliquot_tag": "ALQ_e677622d", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04071.RNA-Seq.S7_L008_R1.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3212017003 FASTQ S7_L008_R1 unaligned CPTAC3 0cf40994-b735-414b-9779-e4b18f9009d5 40865fff718ea3e9d243b73143121a6e {"aliquot_tag": "ALQ_9cb7314d", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.RNA-Seq.S7_L008_R2.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3614110640 FASTQ S7_L008_R2 unaligned CPTAC3 7476ad07-0f47-4459-921a-3f37129a47a3 53529f958cb6bb8a30463d85016bcaea {"aliquot_tag": "ALQ_9cb7314d", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.RNA-Seq.transcriptome.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.transcriptome.gdc_realn.bam 8576238516 BAM transcriptome harmonized CPTAC3 a7082210-5a40-4b4c-85ef-19d7001ecd64 bb9c88f51431c29785745028971da548 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.RNA-Seq.transcriptome.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.transcriptome.gdc_realn.bam 16512761947 BAM transcriptome harmonized CPTAC3 81e7ae12-a221-44d4-8675-ee2d3c937425 059d90a8d20e42921289dd8a832f7d1f {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor"} -C3L-04071.WGS.N C3L-04071 LSCC WGS blood_normal CPT0220490002 CPT0220490002.WholeGenome.RP-1303.bam 64119487686 BAM aligned CPTAC3 82acc8a7-ca5f-497f-9bd7-7de44023f8ab 24abbedb6736ef78eb93fab978d91337 {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04071.WGS.N.hg38 C3L-04071 LSCC WGS blood_normal CPT0220490002 3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wgs_gdc_realn.bam 94307388841 BAM harmonized CPTAC3 6072dfd0-63ad-46d4-a039-35a0f851216b b33620b83bdb82324c7cd9ef13f8ba3a {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04071.WGS.T C3L-04071 LSCC WGS tumor CPT0221200006 CPT0221200006.WholeGenome.RP-1303.bam 56456613353 BAM aligned CPTAC3 7278c03d-f6ff-4e5c-a3a6-332b37fcd674 6ab5f2194e2d664b1b54f8aa0752ded3 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor"} -C3L-04071.WGS.T.hg38 C3L-04071 LSCC WGS tumor CPT0221200006 80cdb7b5-f5b1-4343-a227-34c9e836f2ad_wgs_gdc_realn.bam 83429903448 BAM harmonized CPTAC3 55d13f2d-9a6a-49ec-a9f2-258019a74413 c3f0bf037e9b46b2ccafc899f42328bf {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor"} -C3L-04071.WXS.A C3L-04071 LSCC WXS tissue_normal CPT0221220006 CPT0221220006.WholeExome.RP-1303.bam 20203906184 BAM aligned CPTAC3 d33baaa7-d656-48c4-a59a-43dd5c52a32e df323f7cea19fe78f652c52652b003fe {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.WXS.A.hg38 C3L-04071 LSCC WXS tissue_normal CPT0221220006 7cf5441a-d9c0-42a3-a97d-6e39cbb7e3ea_wxs_gdc_realn.bam 27716899411 BAM harmonized CPTAC3 8468d9d6-0dbf-433f-8876-bb9dd6364f6e 067d95336bfe4676a50ba751634e96e5 {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04071.WXS.N C3L-04071 LSCC WXS blood_normal CPT0220490002 CPT0220490002.WholeExome.RP-1303.bam 24810412658 BAM aligned CPTAC3 fa6f2ac6-2351-4e04-b2bb-499a2624fffd e13e8ca77157c0b3ca7461739b87501f {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04071.WXS.N.hg38 C3L-04071 LSCC WXS blood_normal CPT0220490002 3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wxs_gdc_realn.bam 34178384162 BAM harmonized CPTAC3 e401f9d3-e7dd-4353-be52-a003345619c2 a511e186c83793147369701a515364d8 {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04071.WXS.T C3L-04071 LSCC WXS tumor CPT0221200006 CPT0221200006.WholeExome.RP-1303.bam 24069272019 BAM aligned CPTAC3 325e51fd-7604-420d-b2a8-a3d2e9e371c9 8cbccebb1a17505fa50985f365122d7b {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor"} -C3L-04071.WXS.T.hg38 C3L-04071 LSCC WXS tumor CPT0221200006 80cdb7b5-f5b1-4343-a227-34c9e836f2ad_wxs_gdc_realn.bam 33211413787 BAM harmonized CPTAC3 05e9cf45-ac6d-4e99-810f-2bc21c8fb703 acb23aa89dbe61e3782bb3087d6cb981 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor"} -C3L-04072.MethArray.Green.T C3L-04072 PDA Methylation_Array tumor CPT0221240007 203561620159_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 84be98f3-cf54-4838-8f6a-f808af9837f6 9b9e427121cb31159b3b81b0a2584d74 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04072.MethArray.Red.T C3L-04072 PDA Methylation_Array tumor CPT0221240007 203561620159_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 7d560fe0-fd27-4eea-949a-49ee07030036 9dc7ea31fd8ece5cce4523da48901d78 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04072.miRNA-Seq.A.hg38 C3L-04072 PDA miRNA-Seq tissue_normal CPT0221250007 0697a12e-c985-4510-8bc2-7438e4252138_mirnaseq_gdc_realn.bam 188053294 BAM harmonized CPTAC3 d52840df-ec63-42e3-9d1e-129c22e2d72a 423629d9fb597cca9d84b92debec1abe {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04072.miRNA-Seq.S146_L008_R1.A C3L-04072 PDA miRNA-Seq tissue_normal CPT0221250007 190828_UNC32-K00270_0200_BH7GVJBBXY_TCATTC_S146_L008_R1_001.unaln.bam 165020240 BAM S146_L008_R1 unaligned CPTAC3 1632f4a9-c6a1-4cdf-835d-1d13c2cfb9c7 ea4663769f739e345a7dc01e3418bf4a {"aliquot_tag": "ALQ_c92fc05a", "sample": "S146", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04072.miRNA-Seq.S33_L004_R1.T C3L-04072 PDA miRNA-Seq tumor CPT0221240010 190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L004_R1_001.unaln.bam 242119996 BAM S33_L004_R1 unaligned CPTAC3 459b14b3-c375-4a50-8f7f-43e6bf7a87f7 8af14c781c4ed3b2544eec14d875e92f {"aliquot_tag": "ALQ_73304d08", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04072.miRNA-Seq.T.hg38 C3L-04072 PDA miRNA-Seq tumor CPT0221240010 aac3a103-654d-4401-b99c-5ca7da7f909e_mirnaseq_gdc_realn.bam 268481879 BAM harmonized CPTAC3 d561aaca-5cd8-404a-892b-538beec472af 7bb74012f1e4ced62bd92a4ecf79642c {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor"} -C3L-04072.RNA-Seq.chimeric.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.chimeric.gdc_realn.bam 43701221 BAM chimeric harmonized CPTAC3 4558bd0f-87d2-4e32-96c6-f64fd52ff38a 9c41ba78ea05d56254fa2decb6075ca5 {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04072.RNA-Seq.chimeric.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.chimeric.gdc_realn.bam 140357915 BAM chimeric harmonized CPTAC3 a424dae8-8591-47f5-9214-b0e9be3ca67b 06fb8f28cf40dbb7cee94a875904a9e9 {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor"} -C3L-04072.RNA-Seq.genomic.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.genomic.gdc_realn.bam 10049068458 BAM genomic harmonized CPTAC3 42a4b1f3-006d-42e9-986f-f4d9c931021b 27c2562cff10916cb6d907bcd34cc60a {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04072.RNA-Seq.genomic.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.genomic.gdc_realn.bam 8484129318 BAM genomic harmonized CPTAC3 461063b4-c84b-4c65-84c4-ca5423e1263b c187878d8c4257d86359aa31084bb53b {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor"} -C3L-04072.RNA-Seq.S13_L004_R1.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R1_001.fastq.gz 4567399648 FASTQ S13_L004_R1 unaligned CPTAC3 6384d98c-0431-454c-bfbe-02a0eeb169f7 4e52c481371f342dc1845a7833634bb6 {"aliquot_tag": "ALQ_c92fc05a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04072.RNA-Seq.S13_L004_R2.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R2_001.fastq.gz 5302939594 FASTQ S13_L004_R2 unaligned CPTAC3 4f81c80b-93d0-4e4a-96e6-137b1e2dd16b f16271839dce14fb279d250fec9647d1 {"aliquot_tag": "ALQ_c92fc05a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04072.RNA-Seq.S3_L001_R1.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R1_001.fastq.gz 3281861542 FASTQ S3_L001_R1 unaligned CPTAC3 3e143830-c835-4410-86c9-3519bc46ee9f 433df9e30654677fd3026a468f61b2c0 {"aliquot_tag": "ALQ_73304d08", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04072.RNA-Seq.S3_L001_R2.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R2_001.fastq.gz 3203441845 FASTQ S3_L001_R2 unaligned CPTAC3 69a69920-dac4-4d05-803c-a89a1b444820 8d3c4b00b2cbd79a054a05c0578b015f {"aliquot_tag": "ALQ_73304d08", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04072.RNA-Seq.transcriptome.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.transcriptome.gdc_realn.bam 12475385233 BAM transcriptome harmonized CPTAC3 12936492-5be7-4724-97a9-04075a9d870c d0fb74d0d2c26a38a2fc82c2204e03ac {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04072.RNA-Seq.transcriptome.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.transcriptome.gdc_realn.bam 7090139619 BAM transcriptome harmonized CPTAC3 f8940b99-6a5b-4718-a084-478e93644617 84ce77a88ed2ce52fa004d1595ff235d {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor"} -C3L-04072.Targeted.T C3L-04072 PDA Targeted_Sequencing tumor CPT0221240007 CPT0221240007.CustomSelection.RP-1303.PDO-18786.bam 5683060183 BAM aligned CPTAC3 acea7c01-62b7-465e-9de4-5d81429affad 4aacb524547fba1968680af2f17ade4f {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04072.Targeted.T.hg38 C3L-04072 PDA Targeted_Sequencing tumor CPT0221240007 a8a006ee-1db0-4b57-9437-85d29dc1084e_targetedsequencing_gdc_realn.bam 7798261186 BAM harmonized CPTAC3 3f7b423f-0857-4f14-a821-7e087b201b3c 44ef259c74f87dbd308b3f36b57cb1f3 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04072.WGS.N C3L-04072 PDA WGS blood_normal CPT0220470002 CPT0220470002.WholeGenome.RP-1303.bam 70102215285 BAM aligned CPTAC3 28c7f814-5699-4792-aafd-c135c1711886 e598d665e5a3b99f47610e38857bfe74 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04072.WGS.N.hg38 C3L-04072 PDA WGS blood_normal CPT0220470002 e7f1b14d-4706-4e02-8833-4e72f56a82c0_wgs_gdc_realn.bam 101107887523 BAM harmonized CPTAC3 4d9437e6-d8dd-44ab-b1e5-a68bb179cc11 5c66df689045574e3499ff46687d40a7 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04072.WGS.T C3L-04072 PDA WGS tumor CPT0221240007 CPT0221240007.WholeGenome.RP-1303.bam 79387089817 BAM aligned CPTAC3 68d48600-d129-420c-b8e3-74c6e23a384c d341b1a4177efecbca2466fb29a8a413 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04072.WGS.T.hg38 C3L-04072 PDA WGS tumor CPT0221240007 a8a006ee-1db0-4b57-9437-85d29dc1084e_wgs_gdc_realn.bam 114864137399 BAM harmonized CPTAC3 abe5e972-1d12-4748-8458-70d58db354f5 2c7f74d847f46b84c76bbd263b88dd18 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04072.WXS.N C3L-04072 PDA WXS blood_normal CPT0220470002 CPT0220470002.WholeExome.RP-1303.bam 23709292733 BAM aligned CPTAC3 bc3fc5af-189f-4dfb-b49e-c71d083ac5b4 9346b76f4c15fd3dfd9916ff71b811a5 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04072.WXS.N.hg38 C3L-04072 PDA WXS blood_normal CPT0220470002 e7f1b14d-4706-4e02-8833-4e72f56a82c0_wxs_gdc_realn.bam 33058317419 BAM harmonized CPTAC3 56b9afe1-7dd1-4c3a-9c27-93967e2aa4b6 3f5b7a22d0a7e86b6214c27d527308c5 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04072.WXS.T C3L-04072 PDA WXS tumor CPT0221240007 CPT0221240007.WholeExome.RP-1303.bam 45846897658 BAM aligned CPTAC3 214f87ce-9f39-4a11-9106-cd516cfb1c92 95325129f2273ba828541e46dc4058ce {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04072.WXS.T.hg38 C3L-04072 PDA WXS tumor CPT0221240007 a8a006ee-1db0-4b57-9437-85d29dc1084e_wxs_gdc_realn.bam 63966509812 BAM harmonized CPTAC3 7e2ac5aa-3ad4-4e98-abfd-3a83afcdef5f 7ee7a8659ac9459f2e38dc7cd6d4dc02 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor"} -C3L-04079.MethArray.Green.A C3L-04079 LSCC Methylation_Array tissue_normal CPT0304140006 204372030015_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 c7dd055a-0168-4fdb-971b-b89f749c6e6c 92e8ad9fca67bdc38e8787f62421a16c {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.MethArray.Green.T C3L-04079 LSCC Methylation_Array tumor CPT0304120006 204367470132_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 c9aede5e-2574-4ffb-984c-8209a99aacce 7d1e34e0f10c7dcfb4fe52803c813467 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor"} -C3L-04079.MethArray.Red.A C3L-04079 LSCC Methylation_Array tissue_normal CPT0304140006 204372030015_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 769478ae-2592-46fe-80b8-07935a1d1325 729b3189673258d9131f04414003b2ed {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.MethArray.Red.T C3L-04079 LSCC Methylation_Array tumor CPT0304120006 204367470132_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 fb794db9-86bb-4b04-aa5e-88c9779e5cdc dc1828cc34dd91217a25af0fca77d692 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor"} -C3L-04079.miRNA-Seq.A.hg38 C3L-04079 LSCC miRNA-Seq tissue_normal CPT0304140009 c61c2663-c4a6-4f22-9a3e-8c88cdd6fef4_mirnaseq_gdc_realn.bam 289223267 BAM harmonized CPTAC3 1f096955-4765-4ed7-8b70-aac094bce777 7afbf7fb320b9752d9ae48bf3211c3da {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.miRNA-Seq.S24_L001_R1.A C3L-04079 LSCC miRNA-Seq tissue_normal CPT0304140009 200325_UNC31-K00269_0272_AHHC2NBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 255806807 BAM S24_L001_R1 unaligned CPTAC3 fbf64f36-d546-4ab4-a32e-29a7c7d0daa7 1bb4bddb600e38b05e1a2f80dd04ebb8 {"aliquot_tag": "ALQ_92058ada", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.miRNA-Seq.S9_L008_R1.T C3L-04079 LSCC miRNA-Seq tumor CPT0304120009 200224_UNC31-K00269_0267_AHC722BBXY_GATCAG_S9_L008_R1_001.unaln.bam 206680936 BAM S9_L008_R1 unaligned CPTAC3 3b77d0cd-51c2-4f06-97d2-4ce4492633d7 47e81999372a81cccc4d764d2dee43f7 {"aliquot_tag": "ALQ_1d457f7a", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04079.miRNA-Seq.T.hg38 C3L-04079 LSCC miRNA-Seq tumor CPT0304120009 5aae3bcc-53d6-42c6-b76a-413f4e8f8942_mirnaseq_gdc_realn.bam 229476333 BAM harmonized CPTAC3 f53d5b80-32d6-4c25-801d-789b9f117d4e b384c9dbc66b216cd2e1bbcd65a59922 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor"} -C3L-04079.RNA-Seq.chimeric.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.chimeric.gdc_realn.bam 63287208 BAM chimeric harmonized CPTAC3 9734a833-c7af-4135-8326-0baec2820f27 ddd0001b9b0d34acd0a023794d8549be {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.RNA-Seq.chimeric.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.chimeric.gdc_realn.bam 34155161 BAM chimeric harmonized CPTAC3 0fb487ae-fd95-45c4-b64b-bb3bbe76304e a588f8a7ef2a0125fbd5b18835e2e254 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor"} -C3L-04079.RNA-Seq.genomic.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.genomic.gdc_realn.bam 8130247384 BAM genomic harmonized CPTAC3 eaf5af6f-5d20-4858-ab0d-5e5d0f9a35ce 62e501299a22fbd645a77b41ed3670a7 {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.RNA-Seq.genomic.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.genomic.gdc_realn.bam 7857414214 BAM genomic harmonized CPTAC3 c8b4c869-74f1-4bc3-bc52-d006ef3f7746 fbbfa49d7813bd377251961abf22f555 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor"} -C3L-04079.RNA-Seq.S32_L008_R1.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R1_001.fastq.gz 4129549202 FASTQ S32_L008_R1 unaligned CPTAC3 6889624b-4f29-4f47-a3b2-2614c9f55cb9 a630d74eaea2c4f2ec566adc2cbf1ef8 {"aliquot_tag": "ALQ_92058ada", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.RNA-Seq.S32_L008_R2.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R2_001.fastq.gz 4228325182 FASTQ S32_L008_R2 unaligned CPTAC3 c4d4d9f5-28a6-43fc-a0dd-8a5012893224 6873503e3b668d4a98454c6e6c8c093c {"aliquot_tag": "ALQ_92058ada", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.RNA-Seq.S9_L003_R1.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R1_001.fastq.gz 3690093354 FASTQ S9_L003_R1 unaligned CPTAC3 2815a18f-e1ba-45de-a67e-2ac1988ec582 cead2c5c835ab34e38da6f24e600dc49 {"aliquot_tag": "ALQ_1d457f7a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04079.RNA-Seq.S9_L003_R2.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R2_001.fastq.gz 3997440822 FASTQ S9_L003_R2 unaligned CPTAC3 10844c0d-45f2-4b34-a035-a4f108e93efc 656cd059003417fe8b652915cb6a6e2c {"aliquot_tag": "ALQ_1d457f7a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04079.RNA-Seq.transcriptome.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.transcriptome.gdc_realn.bam 10029873482 BAM transcriptome harmonized CPTAC3 d3876151-0a58-490f-abc2-e77de17cdfdc a4f9ee2ae5f79a203f05038da67e5b2a {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.RNA-Seq.transcriptome.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.transcriptome.gdc_realn.bam 9928753388 BAM transcriptome harmonized CPTAC3 c86a8754-d004-46c6-9bbe-a643ca3f9d5c cc0834e2a75459eeb831c4b0c439a522 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor"} -C3L-04079.WGS.N C3L-04079 LSCC WGS blood_normal CPT0305040002 CPT0305040002.WholeGenome.RP-2158.bam 24347450858 BAM aligned CPTAC3 41fef29f-db09-4983-8548-722fe4ad9e45 b80372ff61768513d6df6e942f84049c {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal"} -C3L-04079.WGS.N.hg38 C3L-04079 LSCC WGS blood_normal CPT0305040002 9bea6b89-38ce-45c1-8fb2-9c0be6be4cd2_wgs_gdc_realn.bam 70378739186 BAM harmonized CPTAC3 6a3d4196-15a5-48bd-bf17-52f093143682 6847eea5773a3833525b654fceac1a69 {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal"} -C3L-04079.WGS.T C3L-04079 LSCC WGS tumor CPT0304120006 CPT0304120006.WholeGenome.RP-2158.bam 23699922433 BAM aligned CPTAC3 fef741d5-c6e6-467a-99cc-af68ae9bb561 85f444beb6878506c1f372203d3f5da5 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor"} -C3L-04079.WGS.T.hg38 C3L-04079 LSCC WGS tumor CPT0304120006 1acb4845-2e95-438b-95ad-2598b8dce7e7_wgs_gdc_realn.bam 71588721822 BAM harmonized CPTAC3 40e8d818-d2c1-4bf9-a55b-0835e0ed02db a751272a39687a625744500f8c05c3ee {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor"} -C3L-04079.WXS.A C3L-04079 LSCC WXS tissue_normal CPT0304140006 CPT0304140006.WholeExome.RP-1303.bam 19991935832 BAM aligned CPTAC3 5010dd15-dafb-4d9a-a528-69fedff1d4be b7ed03da077163a2db023fee06fc00df {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.WXS.A.hg38 C3L-04079 LSCC WXS tissue_normal CPT0304140006 ccfa6c0c-3cdd-4e18-9b5b-ec7ede0f5fbd_wxs_gdc_realn.bam 28039606654 BAM harmonized CPTAC3 bbe8c181-63f1-4b73-912d-8b91aafe3ca6 25515eab334e5e508c6b9bf8b97330fb {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04079.WXS.N C3L-04079 LSCC WXS blood_normal CPT0305040002 CPT0305040002.WholeExome.RP-1303.bam 26883502029 BAM aligned CPTAC3 13518d81-cf78-4be4-af7f-74fffab3ad67 9fd910576e4f17e3ee2a917804ae7c31 {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal"} -C3L-04079.WXS.N.hg38 C3L-04079 LSCC WXS blood_normal CPT0305040002 9bea6b89-38ce-45c1-8fb2-9c0be6be4cd2_wxs_gdc_realn.bam 37056907198 BAM harmonized CPTAC3 74809893-4a2d-41fd-8c1a-b6059707b845 cde281513d9eec6ca397f7741e7f2824 {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal"} -C3L-04079.WXS.T C3L-04079 LSCC WXS tumor CPT0304120006 CPT0304120006.WholeExome.RP-1303.bam 21501451261 BAM aligned CPTAC3 90412e42-0440-4770-a15f-f3872d64cc99 65c1607b8f367d3cb1f7376bf0ec723f {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor"} -C3L-04079.WXS.T.hg38 C3L-04079 LSCC WXS tumor CPT0304120006 1acb4845-2e95-438b-95ad-2598b8dce7e7_wxs_gdc_realn.bam 30301531678 BAM harmonized CPTAC3 5c8e9206-0fcb-4ee9-b307-348ea274d832 230b05d50dd8703af55cebc526b8e4d5 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor"} -C3L-04080.MethArray.Green.A C3L-04080 PDA Methylation_Array tissue_normal CPT0221490007 203561450020_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 39dc82b2-b443-4cda-848c-3dc8cbbfab62 13b79c61f385fef33e5fb65a77052fa2 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.MethArray.Green.T C3L-04080 PDA Methylation_Array tumor CPT0221470008 203273630261_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ab96bb4a-8fa6-4514-ab1c-b9ed1b4337b8 b879e5649ce9bf8bd270acc73411e13a {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04080.MethArray.Red.A C3L-04080 PDA Methylation_Array tissue_normal CPT0221490007 203561450020_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 2fca1053-94bd-489b-950b-e8c9fbfd9194 f645d117cd1354b217188c925751a327 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.MethArray.Red.T C3L-04080 PDA Methylation_Array tumor CPT0221470008 203273630261_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 50f6e9a1-aa44-4697-9233-4617e0350021 726083af8d6b9e0e3604a661d3936c60 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04080.miRNA-Seq.A.hg38 C3L-04080 PDA miRNA-Seq tissue_normal CPT0221490010 094aadcf-5abf-48d8-aad6-533cd9296b3d_mirnaseq_gdc_realn.bam 255143705 BAM harmonized CPTAC3 83943e09-8a6c-41d3-ac94-0e34972c0d4c fd2d8b1dc855d3a36b054bd3aa286f3b {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.miRNA-Seq.S12_L004_R1.T C3L-04080 PDA miRNA-Seq tumor CPT0221470011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCAACA_S12_L004_R1_001.unaln.bam 189077676 BAM S12_L004_R1 unaligned CPTAC3 b298ddda-8e4d-4a76-922e-d803ce536e37 1464be38a10c189b5d7da236ee3fd3bd {"aliquot_tag": "ALQ_95cee453", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04080.miRNA-Seq.S29_L003_R1.A C3L-04080 PDA miRNA-Seq tissue_normal CPT0221490010 190813_UNC32-K00270_0196_AH5MCWBBXY_TCCCGA_S29_L003_R1_001.unaln.bam 213020067 BAM S29_L003_R1 unaligned CPTAC3 abe4335f-51f3-4534-8be0-deca4bb6f134 ff7a400a39cb5e500ba941976aaab390 {"aliquot_tag": "ALQ_5df96aa4", "sample": "S29", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.miRNA-Seq.T.hg38 C3L-04080 PDA miRNA-Seq tumor CPT0221470011 9ae4c3a9-e9eb-419f-a055-6538f207f462_mirnaseq_gdc_realn.bam 214863179 BAM harmonized CPTAC3 635e172d-18d9-473e-959a-577d893346b6 b003cc195c404289c83289aab3f0b728 {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor"} -C3L-04080.RNA-Seq.chimeric.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.chimeric.gdc_realn.bam 38392959 BAM chimeric harmonized CPTAC3 ba69042a-fcb6-4921-9137-f2455a62bb39 843b48005ba0d0df44be43e705c737a4 {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.RNA-Seq.chimeric.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.chimeric.gdc_realn.bam 30603819 BAM chimeric harmonized CPTAC3 11a60ad1-3e66-42ff-bc59-aa30f5d6a3e8 3049f9240f414d8b747b3a6c9824fb4e {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor"} -C3L-04080.RNA-Seq.genomic.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.genomic.gdc_realn.bam 8703626542 BAM genomic harmonized CPTAC3 88b1081e-3768-4e49-af2c-636230c7cb69 794e99f424e5661f7515c524fff13e10 {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.RNA-Seq.genomic.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.genomic.gdc_realn.bam 8856270179 BAM genomic harmonized CPTAC3 f957a6b9-0f04-4b38-9f6c-7f98e77281c8 db7bfab5d9ca470e05c766992cd756c4 {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor"} -C3L-04080.RNA-Seq.S16_L004_R1.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R1_001.fastq.gz 4096443371 FASTQ S16_L004_R1 unaligned CPTAC3 0bafbbc4-a8fd-4a3b-b252-3adac644fe60 720f5a85c13f0ef0270aa9010c11ce0b {"aliquot_tag": "ALQ_5df96aa4", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.RNA-Seq.S16_L004_R2.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R2_001.fastq.gz 4600184115 FASTQ S16_L004_R2 unaligned CPTAC3 8567f306-f3e7-441d-aca0-38432ccfeb16 28548d4fc41ff1aa9d281ff173feb308 {"aliquot_tag": "ALQ_5df96aa4", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.RNA-Seq.S9_L003_R1.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4051178418 FASTQ S9_L003_R1 unaligned CPTAC3 87c9b79e-abdb-40ab-b747-52765ddf30d7 79f02f3c5757a0d80e251768612598af {"aliquot_tag": "ALQ_95cee453", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04080.RNA-Seq.S9_L003_R2.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4511095235 FASTQ S9_L003_R2 unaligned CPTAC3 ddeb1c1d-2624-46a6-8f66-d435d4c37f01 0402758b3fe05c423de4103eb3da6909 {"aliquot_tag": "ALQ_95cee453", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04080.RNA-Seq.transcriptome.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.transcriptome.gdc_realn.bam 9510226870 BAM transcriptome harmonized CPTAC3 f79a02b1-c904-46d6-bd0b-e4cbb7fbd62d 24f61ee6764019bb116f31862495d928 {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.RNA-Seq.transcriptome.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.transcriptome.gdc_realn.bam 11400731575 BAM transcriptome harmonized CPTAC3 cd95a27b-69e9-499c-a8d8-1f5d35e1cd56 5d5cda7ff2b481dde7c694a9fc359e27 {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor"} -C3L-04080.Targeted.T C3L-04080 PDA Targeted_Sequencing tumor CPT0221470008 CPT0221470008.CustomSelection.RP-1303.PDO-18786.bam 6029346310 BAM aligned CPTAC3 bb02c205-ca71-418f-881c-e4d396be8b6b ae6c8aa5201e57b0fd72d2e906b51e02 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04080.Targeted.T.hg38 C3L-04080 PDA Targeted_Sequencing tumor CPT0221470008 f5c201b6-81e1-4e77-af6b-368926a95177_targetedsequencing_gdc_realn.bam 8367601459 BAM harmonized CPTAC3 066c9cc2-ed3e-4dd7-85c2-14e374eb4c35 da128577696e035233a2c548eb3b793c {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04080.WGS.N C3L-04080 PDA WGS blood_normal CPT0220550002 CPT0220550002.WholeGenome.RP-1303.bam 60513911882 BAM aligned CPTAC3 a76b12cc-7198-479d-960b-1cb14aa3e853 6930ae17acb8773dff6f77c7331f8121 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04080.WGS.N.hg38 C3L-04080 PDA WGS blood_normal CPT0220550002 03f3fbda-bbd7-4649-b677-7e8fcbbacb5b_wgs_gdc_realn.bam 88324086087 BAM harmonized CPTAC3 68ab3e9a-bd37-44be-8133-99d381095699 3e85d68d3924f671bb74108617a9a343 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04080.WGS.T C3L-04080 PDA WGS tumor CPT0221470008 CPT0221470008.WholeGenome.RP-1303.bam 61227961897 BAM aligned CPTAC3 3a63cc50-e2fa-4a8f-a596-812af022df0b 1ab69c54f7a087d360e022e863732e74 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04080.WGS.T.hg38 C3L-04080 PDA WGS tumor CPT0221470008 f5c201b6-81e1-4e77-af6b-368926a95177_wgs_gdc_realn.bam 90856548819 BAM harmonized CPTAC3 fd0a5edf-f331-4563-818d-060962d79803 982e2188fe1b6e7f73a9456a95776e1d {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04080.WXS.A C3L-04080 PDA WXS tissue_normal CPT0221490007 CPT0221490007.WholeExome.RP-1303.bam 32327370448 BAM aligned CPTAC3 fcf34ca5-1cb8-4822-a2b2-6e38b06d9bca 6c9cbd05c71021cce2968e73c453af09 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.WXS.A.hg38 C3L-04080 PDA WXS tissue_normal CPT0221490007 09b6c719-e037-48c6-b430-bd8e8c2f9c77_wxs_gdc_realn.bam 44003296021 BAM harmonized CPTAC3 56daac1c-6311-42ee-9a1e-b012a61be775 39e0cd59eb12ba6ab7fb7a32f034cbc9 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04080.WXS.N C3L-04080 PDA WXS blood_normal CPT0220550002 CPT0220550002.WholeExome.RP-1303.bam 25514730002 BAM aligned CPTAC3 39850be6-0dda-49a2-af6d-95f02e8c9358 2cbfcb02b5983aca114164d9074ebdf0 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04080.WXS.N.hg38 C3L-04080 PDA WXS blood_normal CPT0220550002 03f3fbda-bbd7-4649-b677-7e8fcbbacb5b_wxs_gdc_realn.bam 35369246800 BAM harmonized CPTAC3 fc949e80-7df5-4e0f-9f54-de1f5e5fe540 a4eb6b351f4d2322fde9aa213c2c0478 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04080.WXS.T C3L-04080 PDA WXS tumor CPT0221470008 CPT0221470008.WholeExome.RP-1303.bam 47172105321 BAM aligned CPTAC3 09f34bb3-1e73-4f2b-a2da-b2becaa38d80 8c52472f19d82a2677193c31d09df2b3 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04080.WXS.T.hg38 C3L-04080 PDA WXS tumor CPT0221470008 f5c201b6-81e1-4e77-af6b-368926a95177_wxs_gdc_realn.bam 65780362684 BAM harmonized CPTAC3 2a898e06-4d61-457a-ba5d-9e2bebc660e7 70845f17c9e8a631584138cf1670bd3f {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor"} -C3L-04081.MethArray.Green.T C3L-04081 GBM Methylation_Array tumor CPT0265510008 205555390176_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 14cbae22-de8f-432f-a921-b32f66189665 a75b982b15c57dd5f174dd2a6e61f59e {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor"} -C3L-04081.MethArray.Red.T C3L-04081 GBM Methylation_Array tumor CPT0265510008 205555390176_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 44ba9c0b-f969-4a64-93ad-bd193b5365e0 6f981db1716d67b730ebb89f62751fa1 {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor"} -C3L-04081.miRNA-Seq.S33_L003_R1.T C3L-04081 GBM miRNA-Seq tumor CPT0265510011 210817_UNC31-K00269_0302_AHLCTHBBXY_TAATCG_S33_L003_R1_001.unaln.bam 208478653 BAM S33_L003_R1 unaligned CPTAC3 dce94583-521c-459d-b529-45c5971da228 67738811b28cfbe1b345975e70dc2773 {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04081.miRNA-Seq.S34_L005_R1.T C3L-04081 GBM miRNA-Seq tumor CPT0265510011 210702_UNC32-K00270_0289_AHKJ22BBXY_TAATCG_S34_L005_R1_001.unaln.bam 326214186 BAM S34_L005_R1 unaligned CPTAC3 ab3f233e-2bb2-484a-92b2-0852ad5a4bf2 e00a1125777ac8b88a5561714faf3bef {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04081.miRNA-Seq.T.hg38 C3L-04081 GBM miRNA-Seq tumor CPT0265510011 ae7846ed-07bf-446d-a1ec-b3558f1b8edb_mirnaseq_gdc_realn.bam 599207791 BAM harmonized CPTAC3 775d25ac-60a2-4e9d-87b8-ff9a7b023eb3 b1149dfafffc975c671e3585db74acae {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor"} -C3L-04081.RNA-Seq.chimeric.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.chimeric.gdc_realn.bam 207123557 BAM chimeric harmonized CPTAC3 fc9fffa1-0e7f-47f9-a0d3-e18f1b5c61fc 69248f743af7ee71882dab5ccde875ff {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor"} -C3L-04081.RNA-Seq.genomic.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.genomic.gdc_realn.bam 9151750057 BAM genomic harmonized CPTAC3 fc058a02-e82d-4807-864d-b429c8fbf3d5 71cd3ccece273006ec04e89ad0d392ef {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor"} -C3L-04081.RNA-Seq.S19_L005_R1.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ S19_L005_R1 unaligned CPTAC3 ff00dd51-d902-4563-b623-786e9f78aaf5 b56929c00e32fc2b8213b95e39cf9ea6 {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04081.RNA-Seq.S19_L005_R2.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R2_001.fastq.gz 4509949652 FASTQ S19_L005_R2 unaligned CPTAC3 bdef277c-4632-450b-8030-037e3dbe8b32 93f264f4c774516474e281836bb46804 {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04081.RNA-Seq.transcriptome.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.transcriptome.gdc_realn.bam 10489874222 BAM transcriptome harmonized CPTAC3 4b684e92-ed7f-48e8-803e-6a9ed1fcdeea 3f7bfd94f917b19f7fe57a9a7d2bc976 {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor"} -C3L-04081.WGS.N C3L-04081 GBM WGS blood_normal CPT0264060002 CPT0264060002.WholeGenome.RP-2158.bam 22559972260 BAM aligned CPTAC3 2f67faeb-027b-43ce-b000-3866c6ebf473 2914847c230e8533c55181bfcf72f572 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal"} -C3L-04081.WGS.N.hg38 C3L-04081 GBM WGS blood_normal CPT0264060002 e6b94726-509a-4613-8525-6ea79747b2f9_wgs_gdc_realn.bam 65969932698 BAM harmonized CPTAC3 4ad311e9-01c5-464a-8d6c-40f40c331c19 d944222c06001c5ea0ac874b595d0fd8 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal"} -C3L-04081.WGS.T C3L-04081 GBM WGS tumor CPT0265510008 CPT0265510008.WholeGenome.RP-2158.bam 25514113575 BAM aligned CPTAC3 e58c7501-6b0f-47d9-a0d9-fa72b6e25f39 c5eee9b9026866fe029bb2b94e51aeef {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor"} -C3L-04081.WGS.T.hg38 C3L-04081 GBM WGS tumor CPT0265510008 fef12b13-bc4b-49fe-8975-9e7b25380154_wgs_gdc_realn.bam 73190033773 BAM harmonized CPTAC3 c8e3e5a9-2798-4125-a0f8-a84d2d5bb653 b2cb2fb5dfc7c5c380b7a34f0d6b8d1a {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor"} -C3L-04081.WXS.N C3L-04081 GBM WXS blood_normal CPT0264060002 CPT0264060002.WholeExome.RP-1303.bam 23994779930 BAM aligned CPTAC3 df9455fb-b575-4002-9e2d-d7fb09fbebaa a92a657f8586eda0e3c8307992dc5c12 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal"} -C3L-04081.WXS.N.hg38 C3L-04081 GBM WXS blood_normal CPT0264060002 e6b94726-509a-4613-8525-6ea79747b2f9_wxs_gdc_realn.bam 33048251483 BAM harmonized CPTAC3 06d346ea-40cc-43fc-ab1e-a6e54c666c36 246051120849631656b676c93176b0b9 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal"} -C3L-04081.WXS.T C3L-04081 GBM WXS tumor CPT0265510008 CPT0265510008.WholeExome.RP-1303.bam 27007068396 BAM aligned CPTAC3 2b3b6248-df80-4767-9b6a-3d11bd2cc5b4 c5137deb9a910ed35a6adf70726cd7de {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor"} -C3L-04081.WXS.T.hg38 C3L-04081 GBM WXS tumor CPT0265510008 fef12b13-bc4b-49fe-8975-9e7b25380154_wxs_gdc_realn.bam 37176913565 BAM harmonized CPTAC3 4f239bb8-5070-4cf0-b14c-599bbb7bfd94 89fc869a424e1545bfe3cc2242445a6f {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor"} -C3L-04082.MethArray.Green.T C3L-04082 GBM Methylation_Array tumor CPT0265570007 204372030014_R01C01_Grn.idat 13677895 IDAT Green NA CPTAC3 c0349bd7-c6ee-4508-8cac-daf50e543949 0de21f3b99742909b3ca43265dca3efe {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor"} -C3L-04082.MethArray.Red.T C3L-04082 GBM Methylation_Array tumor CPT0265570007 204372030014_R01C01_Red.idat 13677895 IDAT Red NA CPTAC3 7ce1f779-23e3-4319-b2a5-1c7a1a73ecd7 a2c952542f194e3b0fd50292e0dd14b4 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor"} -C3L-04082.miRNA-Seq.S28_L002_R1.T C3L-04082 GBM miRNA-Seq tumor CPT0265570010 200403_UNC31-K00269_0274_AHCF7GBBXY_TGACCA_S28_L002_R1_001.unaln.bam 233816272 BAM S28_L002_R1 unaligned CPTAC3 4f037c4a-b4be-4662-ad7b-952b81324e1a 93ed3305db8a814daad8117ffc70074b {"aliquot_tag": "ALQ_59902d89", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04082.miRNA-Seq.T.hg38 C3L-04082 GBM miRNA-Seq tumor CPT0265570010 015db4d7-81d1-47e6-b5ab-da7771bbbb55_mirnaseq_gdc_realn.bam 259069258 BAM harmonized CPTAC3 f3af9903-c085-4e9e-b733-10b15ef81da3 2f9a7e3cd5fec7f69db441e8e590a14e {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor"} -C3L-04082.RNA-Seq.chimeric.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.chimeric.gdc_realn.bam 231785209 BAM chimeric harmonized CPTAC3 6a97843b-826f-487d-adb1-ae0072c4373c f8d61f144e349ad9be792d884281152d {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor"} -C3L-04082.RNA-Seq.genomic.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.genomic.gdc_realn.bam 9309720845 BAM genomic harmonized CPTAC3 9846a55f-d32b-46a6-81dd-5844f50738d7 3f306c7d57030d913fac129c720d3226 {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor"} -C3L-04082.RNA-Seq.S8_L007_R1.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R1_001.fastq.gz 4248024679 FASTQ S8_L007_R1 unaligned CPTAC3 ec4c1755-cc9a-44e5-a27e-f2dfb20759aa 605ddfaf30860a2600b04703541a49ab {"aliquot_tag": "ALQ_59902d89", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04082.RNA-Seq.S8_L007_R2.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R2_001.fastq.gz 4598010602 FASTQ S8_L007_R2 unaligned CPTAC3 5f246b0c-555f-40f6-8164-cb5299028ec0 e98b9ec3f4d86e85e2ade54f3dd4bb39 {"aliquot_tag": "ALQ_59902d89", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04082.RNA-Seq.transcriptome.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.transcriptome.gdc_realn.bam 9887475281 BAM transcriptome harmonized CPTAC3 10b131ca-20b2-47cb-aad1-5d1bdc2f1522 410bbb71fa55e8a206c0016ad73a9f5b {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor"} -C3L-04082.WGS.N C3L-04082 GBM WGS blood_normal CPT0264080002 CPT0264080002.WholeGenome.RP-2158.bam 23128977215 BAM aligned CPTAC3 1f9d4fab-3a95-41ba-8cb8-70de60482272 2d7532abc3f9ac71521f5f2dad90b3bd {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal"} -C3L-04082.WGS.N.hg38 C3L-04082 GBM WGS blood_normal CPT0264080002 bb8cccdb-ed81-4577-985c-bb7a2fa25615_wgs_gdc_realn.bam 67786654929 BAM harmonized CPTAC3 59832d48-68b8-4628-8d69-7508a94d58a8 79168dccb6f2af24bc16916028e034d9 {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal"} -C3L-04082.WGS.T C3L-04082 GBM WGS tumor CPT0265570007 CPT0265570007.WholeGenome.RP-2158.bam 30408005969 BAM aligned CPTAC3 1a83e225-07c0-4a15-a08f-b287f7e00006 2b81437e81e5be3192e476f67c9c4333 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor"} -C3L-04082.WGS.T.hg38 C3L-04082 GBM WGS tumor CPT0265570007 55106539-3a36-4192-9e5c-0e548beee398_wgs_gdc_realn.bam 88159863449 BAM harmonized CPTAC3 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 c0769e69ca889708537eb90cecbe40c2 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor"} -C3L-04082.WXS.N C3L-04082 GBM WXS blood_normal CPT0264080002 CPT0264080002.WholeExome.RP-1303.bam 24080895568 BAM aligned CPTAC3 3da9c6d0-81b1-4747-ab34-b6204f43eea0 0d32d45408d0d227f0b3541c0aaf428c {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal"} -C3L-04082.WXS.N.hg38 C3L-04082 GBM WXS blood_normal CPT0264080002 bb8cccdb-ed81-4577-985c-bb7a2fa25615_wxs_gdc_realn.bam 33980020985 BAM harmonized CPTAC3 5d9f84bd-a6e9-4678-99b9-b92e116bd990 1513532dcc388dc8b01fe6d4998e9e25 {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal"} -C3L-04082.WXS.T C3L-04082 GBM WXS tumor CPT0265570007 CPT0265570007.WholeExome.RP-1303.bam 18573057471 BAM aligned CPTAC3 defd4a05-6b63-4c8e-9b64-de81577bc0f0 2fd311a796471a1d1bff2061e41b8d19 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor"} -C3L-04082.WXS.T.hg38 C3L-04082 GBM WXS tumor CPT0265570007 55106539-3a36-4192-9e5c-0e548beee398_wxs_gdc_realn.bam 26661775311 BAM harmonized CPTAC3 f87237fb-ad70-43ed-af55-79837baed1a4 a13a64916d44f7eae4a95607c38654a3 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor"} -C3L-04083.MethArray.Green.T C3L-04083 GBM Methylation_Array tumor CPT0242430007 204372030024_R08C01_Grn.idat 13677905 IDAT Green NA CPTAC3 aefb1fd3-b012-4af5-a174-0084762eb9f2 7a8b9c06df63235b354e6861b1db3152 {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor"} -C3L-04083.MethArray.Red.T C3L-04083 GBM Methylation_Array tumor CPT0242430007 204372030024_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 990a1e0b-bb2d-41e6-b1c2-aa8c00460311 c8593d64049387a57f6528d91afe6827 {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor"} -C3L-04083.miRNA-Seq.S38_L002_R1.T C3L-04083 GBM miRNA-Seq tumor CPT0242430010 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 227407220 BAM S38_L002_R1 unaligned CPTAC3 2a9500a6-03a6-4a52-bbc2-dcfe47abd5ea 4bf226a8a178ef2f1476cf8354420b1a {"aliquot_tag": "ALQ_e0ce611f", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04083.miRNA-Seq.T.hg38 C3L-04083 GBM miRNA-Seq tumor CPT0242430010 da4f8b93-3997-4daa-8342-c2165079fd1d_mirnaseq_gdc_realn.bam 262845496 BAM harmonized CPTAC3 3160a1e1-b57a-4f65-b463-91727f0bc175 290423ff6be7e16227db692c7d2fdb46 {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor"} -C3L-04083.RNA-Seq.chimeric.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.chimeric.gdc_realn.bam 402539192 BAM chimeric harmonized CPTAC3 fe9c1a7c-0dba-42c5-8051-b9a8cfc62d6a 43907b210b22decd85f7bf125b11606c {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor"} -C3L-04083.RNA-Seq.genomic.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.genomic.gdc_realn.bam 8394501462 BAM genomic harmonized CPTAC3 10d6a6ef-5cfa-4b8e-a892-3aae7014dbaf e1568dc6922a89720902141821c45f88 {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor"} -C3L-04083.RNA-Seq.S6_L002_R1.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ S6_L002_R1 unaligned CPTAC3 5549791b-5875-433f-a85e-980a44bb3310 d2169d9407798432f166af4ed8904f9e {"aliquot_tag": "ALQ_e0ce611f", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04083.RNA-Seq.S6_L002_R2.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ S6_L002_R2 unaligned CPTAC3 21ee205d-ff01-4791-82f7-e4b0f801a099 1d928d05498a22dacbb9eeeb2cdd13e1 {"aliquot_tag": "ALQ_e0ce611f", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04083.RNA-Seq.transcriptome.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.transcriptome.gdc_realn.bam 8410271845 BAM transcriptome harmonized CPTAC3 00cc777f-b56e-4ac1-9309-d7a5c8f2019e d5ee9266fc85fbc2047d8228f589cac2 {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor"} -C3L-04083.WGS.N C3L-04083 GBM WGS blood_normal CPT0243420002 CPT0243420002.WholeGenome.RP-2158.bam 25713668352 BAM aligned CPTAC3 a9c2a88b-947b-4b4e-94b1-6b877ae9b7c6 3429b00db2bbed7bdfaaa7e8f1d236a0 {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal"} -C3L-04083.WGS.N.hg38 C3L-04083 GBM WGS blood_normal CPT0243420002 d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wgs_gdc_realn.bam 76815969296 BAM harmonized CPTAC3 8f0a473f-e05f-4b30-988f-a4456e458e19 816c80c4fcb03e117f17ba7fb395110d {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal"} -C3L-04083.WGS.T C3L-04083 GBM WGS tumor CPT0242430007 CPT0242430007.WholeGenome.RP-2158.bam 24095585977 BAM aligned CPTAC3 058118a9-ec62-4f35-9758-e4701373868f c757a848bb3e2b6aa19a896e5ed11456 {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor"} -C3L-04083.WGS.T.hg38 C3L-04083 GBM WGS tumor CPT0242430007 c66bf4aa-16ce-43f4-a353-8244577bf31a_wgs_gdc_realn.bam 71762265713 BAM harmonized CPTAC3 a76bbc4e-73d6-452c-8993-b8b3c830587b 1728f954055f5e7fdb0ae207e65bad6f {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor"} -C3L-04083.WXS.N C3L-04083 GBM WXS blood_normal CPT0243420002 CPT0243420002.WholeExome.RP-1303.bam 21584884315 BAM aligned CPTAC3 1bf5e1d1-526e-4246-868c-4999e8ed252f a7d1119d54a0eff705d7b935ec25b258 {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal"} -C3L-04083.WXS.N.hg38 C3L-04083 GBM WXS blood_normal CPT0243420002 d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wxs_gdc_realn.bam 29729626446 BAM harmonized CPTAC3 cc4f43a8-3da1-4df6-94d3-48d461e679a2 bc5a779b219d4a2dbb674c610c8b9ebb {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal"} -C3L-04083.WXS.T C3L-04083 GBM WXS tumor CPT0242430007 CPT0242430007.WholeExome.RP-1303.bam 19954045723 BAM aligned CPTAC3 c90b0f71-da42-434e-a69f-a96bfd274fdf aefbbdf3edfc997955e1b2188fd72a5a {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor"} -C3L-04083.WXS.T.hg38 C3L-04083 GBM WXS tumor CPT0242430007 c66bf4aa-16ce-43f4-a353-8244577bf31a_wxs_gdc_realn.bam 28832541743 BAM harmonized CPTAC3 502835bd-e7db-4616-8f28-dca0053b4397 317b22984f7d83e4196a68741396897b {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor"} -C3L-04084.MethArray.Green.T C3L-04084 GBM Methylation_Array tumor CPT0217100006 203219670147_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 fe040214-39c3-434a-85e5-db58d56ddcfd 28f4757d058e3e36f048149d4ac17ac6 {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor"} -C3L-04084.MethArray.Red.T C3L-04084 GBM Methylation_Array tumor CPT0217100006 203219670147_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 3e05fac8-22b3-46b3-b9ef-97bf372abed8 7809b1507c35fcbe94470091be266c52 {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor"} -C3L-04084.miRNA-Seq.S2_L003_R1.T C3L-04084 GBM miRNA-Seq tumor CPT0217100013 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L003_R1_001.unaln.bam 203306244 BAM S2_L003_R1 unaligned CPTAC3 cdf031a1-492b-44b0-a821-90f969c5c7df f00c4ab30e4c829c68ec340b255c1288 {"aliquot_tag": "ALQ_7472fa05", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04084.miRNA-Seq.T.hg38 C3L-04084 GBM miRNA-Seq tumor CPT0217100013 7b3b86b2-a890-476c-990e-afb4e4770c4c_mirnaseq_gdc_realn.bam 225585539 BAM harmonized CPTAC3 6643eb79-4efe-4a2f-abae-80a5a2905cd4 3d99b39299d52e1384c8fda401e7cfde {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor"} -C3L-04084.RNA-Seq.chimeric.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.chimeric.gdc_realn.bam 121646974 BAM chimeric harmonized CPTAC3 7260a314-fd26-4e17-b40e-7a76ad57de65 9b2ac114eae200551428de36aa4c22e3 {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor"} -C3L-04084.RNA-Seq.genomic.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.genomic.gdc_realn.bam 10675176544 BAM genomic harmonized CPTAC3 d6bcec0f-dec3-4f56-ac0b-ff88b1febf44 4a3eec71e5114318e2ee73ee4f80912f {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor"} -C3L-04084.RNA-Seq.S11_L008_R1.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ S11_L008_R1 unaligned CPTAC3 b2c130ea-b93b-4fa3-9d65-ec453849df62 751ff660655b9ad79c5664a87c4a0e07 {"aliquot_tag": "ALQ_7472fa05", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04084.RNA-Seq.S11_L008_R2.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ S11_L008_R2 unaligned CPTAC3 5862426d-2acc-420a-92be-9a0bbfca35d4 b3a128b811cd565b2923670000755e41 {"aliquot_tag": "ALQ_7472fa05", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04084.RNA-Seq.transcriptome.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.transcriptome.gdc_realn.bam 10461895759 BAM transcriptome harmonized CPTAC3 16e520e0-301b-42d5-b393-3269c1d9a7f6 72a6716a45eae4dc38fa7c4fe6535154 {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor"} -C3L-04084.WGS.N C3L-04084 GBM WGS blood_normal CPT0218020002 CPT0218020002.WholeGenome.RP-1303.bam 53676724410 BAM aligned CPTAC3 5682d807-fda5-4e8c-9a39-4ca8e38df754 5d37b4f1ef5e806bb294f9db4cb3992b {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04084.WGS.N.hg38 C3L-04084 GBM WGS blood_normal CPT0218020002 2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wgs_gdc_realn.bam 77845598765 BAM harmonized CPTAC3 5b481775-6b55-4ac6-811e-30d61f8628a9 2350d9b4d3c8f2f70a13e12b406e96e8 {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04084.WGS.T C3L-04084 GBM WGS tumor CPT0217100006 CPT0217100006.WholeGenome.RP-1303.bam 60903190480 BAM aligned CPTAC3 6b568706-c1f6-47aa-a0da-73d9c6709f98 bfa2a708c8554eb1dffdecbd2579bc4c {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor"} -C3L-04084.WGS.T.hg38 C3L-04084 GBM WGS tumor CPT0217100006 a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wgs_gdc_realn.bam 89876705074 BAM harmonized CPTAC3 9b387bac-d0d0-477d-a0d2-b93d22100e1a 4ae98e1aafd7d91843db1005c052db7c {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor"} -C3L-04084.WXS.N C3L-04084 GBM WXS blood_normal CPT0218020002 CPT0218020002.WholeExome.RP-1303.bam 26256467143 BAM aligned CPTAC3 90cf816c-31bb-4c98-a055-e9a16bd34df3 5f1d8dbd894d9a57e951b80656d52fbd {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04084.WXS.N.hg38 C3L-04084 GBM WXS blood_normal CPT0218020002 2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wxs_gdc_realn.bam 35870148383 BAM harmonized CPTAC3 34b6e37f-77df-4184-a9fe-f4b498986b51 93a16266d97e2579bf16f3c8cbb466f9 {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04084.WXS.T C3L-04084 GBM WXS tumor CPT0217100006 CPT0217100006.WholeExome.RP-1303.bam 28674645437 BAM aligned CPTAC3 dd388923-0a5f-417f-992b-30d6e0352443 2be82f27621dfe6094cfdffef3fced13 {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor"} -C3L-04084.WXS.T.hg38 C3L-04084 GBM WXS tumor CPT0217100006 a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wxs_gdc_realn.bam 39609281734 BAM harmonized CPTAC3 25e63555-2fda-402c-b370-947e6c99f146 2abdb9511918f745956ec7c62054f74c {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor"} -C3L-04085.MethArray.Green.T C3L-04085 GBM Methylation_Array tumor CPT0242520007 204930630114_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8b1a04b2-f216-44d9-bc85-82d009c292e0 b160754ddb0839d3b68b643433caf052 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor"} -C3L-04085.MethArray.Red.T C3L-04085 GBM Methylation_Array tumor CPT0242520007 204930630114_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 fd7a104b-1630-45e7-a680-5b835d10aa52 529806c28516285125769712821d4480 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor"} -C3L-04085.miRNA-Seq.S32_L007_R1.T C3L-04085 GBM miRNA-Seq tumor CPT0242520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GGCTAC_S32_L007_R1_001.unaln.bam 287761601 BAM S32_L007_R1 unaligned CPTAC3 bc6d5dfb-bb31-45ae-8b0e-2a08360a5cd7 cb6a11627511330be2551dabf94fb84e {"aliquot_tag": "ALQ_16f29b0a", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04085.miRNA-Seq.T.hg38 C3L-04085 GBM miRNA-Seq tumor CPT0242520010 7c66c6f6-c15c-4849-890e-cfc7f177969b_mirnaseq_gdc_realn.bam 323431402 BAM harmonized CPTAC3 9ec75e7f-e177-4d27-96ab-894f82b7dc3f e0d5830e0ee057de9f88cec76d76e0ed {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor"} -C3L-04085.RNA-Seq.chimeric.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.chimeric.gdc_realn.bam 604928154 BAM chimeric harmonized CPTAC3 fb34a7da-4c56-495e-86b0-96f88aae704c c5463a49eb963a9bb5373aae1c5ca873 {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor"} -C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.genomic.gdc_realn.bam 9281811898 BAM genomic harmonized CPTAC3 0374b38f-c17b-4b24-87cf-386ea14434da 9a4e6a7e347b635c4d66bcfd2a805436 {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor"} -C3L-04085.RNA-Seq.S3_L001_R1.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ S3_L001_R1 unaligned CPTAC3 25f5bea4-fef4-4378-9ccb-8a5befebf88a f7da59772143538816e2c5dd6b9d4b60 {"aliquot_tag": "ALQ_16f29b0a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04085.RNA-Seq.S3_L001_R2.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ S3_L001_R2 unaligned CPTAC3 f0486b67-d5ff-4ae5-97ff-218d95b1e496 d94ec5a4807f86bac4a3cf58aea162d1 {"aliquot_tag": "ALQ_16f29b0a", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04085.RNA-Seq.transcriptome.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.transcriptome.gdc_realn.bam 10042751410 BAM transcriptome harmonized CPTAC3 355f8bf9-8151-4d8d-b14d-8c15fec13215 2d945bd87aec981400240cda19f79609 {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor"} -C3L-04085.WGS.N C3L-04085 GBM WGS blood_normal CPT0243440002 CPT0243440002.WholeGenome.RP-2158.bam 22966209999 BAM aligned CPTAC3 01ee3659-ba85-44ef-b3f6-0af789f0ac5f 92e7683a106258351e6cd8a9dd07ef23 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04085.WGS.N.hg38 C3L-04085 GBM WGS blood_normal CPT0243440002 a70f4fe0-29b6-40d6-877a-4754cb2270cf_wgs_gdc_realn.bam 68911988155 BAM harmonized CPTAC3 71b6faf7-a10b-4bc5-b997-e075c6806937 91f5bcc634a50fb8186a858baaf7e123 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04085.WGS.T C3L-04085 GBM WGS tumor CPT0242520007 CPT0242520007.WholeGenome.RP-2158.bam 22101856002 BAM aligned CPTAC3 fc6a67f7-5b0c-428b-875e-8a1443af63f5 799fdc32c48861a960360077ea6e8a22 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor"} -C3L-04085.WGS.T.hg38 C3L-04085 GBM WGS tumor CPT0242520007 c775700c-9771-4aba-ae72-32627a2c70e2_wgs_gdc_realn.bam 67958029587 BAM harmonized CPTAC3 7c2f1712-0980-4d6f-9dda-6c10a459d864 b95a33d3d9826ef351c7f1bc71b4f52b {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor"} -C3L-04085.WXS.N C3L-04085 GBM WXS blood_normal CPT0243440002 CPT0243440002.WholeExome.RP-1303.bam 21928962196 BAM aligned CPTAC3 1f09d693-58d4-4604-920f-69d7385f0be8 d747d50fe35cbb81a70c1d991424d8d7 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04085.WXS.N.hg38 C3L-04085 GBM WXS blood_normal CPT0243440002 a70f4fe0-29b6-40d6-877a-4754cb2270cf_wxs_gdc_realn.bam 30775678379 BAM harmonized CPTAC3 2d44c795-adb4-4675-be59-17570b206f0c 4d5fe6d4ab923939413809fe81413be2 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04085.WXS.T C3L-04085 GBM WXS tumor CPT0242520007 CPT0242520007.WholeExome.RP-1303.bam 26495108597 BAM aligned CPTAC3 ac44b834-57a0-4a5e-99aa-f58c500d1c8c bc2f83b05fcb8053703d3e909e52dfa6 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor"} -C3L-04085.WXS.T.hg38 C3L-04085 GBM WXS tumor CPT0242520007 c775700c-9771-4aba-ae72-32627a2c70e2_wxs_gdc_realn.bam 35779081908 BAM harmonized CPTAC3 d2d7379c-8a42-42f2-90eb-2121d85516b5 e62855f87f97f3fe93d16988ef2b0e3f {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor"} -C3L-04090.MethArray.Green.T C3L-04090 GBM Methylation_Array tumor CPT0265630007 204367400087_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2932c1e2-8908-4191-a617-94849275268c 467ed866460d854441fab8f05910ce57 {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor"} -C3L-04090.MethArray.Red.T C3L-04090 GBM Methylation_Array tumor CPT0265630007 204367400087_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 0d4bc648-2c5f-4a71-82ce-ae5448ed8ad4 eaa9a674df9a09f9016a41d052f87224 {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor"} -C3L-04090.miRNA-Seq.S29_L002_R1.T C3L-04090 GBM miRNA-Seq tumor CPT0265630010 200403_UNC31-K00269_0274_AHCF7GBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 229790346 BAM S29_L002_R1 unaligned CPTAC3 dd773231-83d5-4d0e-afd5-6827c0ab45cb db36cb210fbd2f57987234081afbf20a {"aliquot_tag": "ALQ_2a84f9e7", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04090.miRNA-Seq.T.hg38 C3L-04090 GBM miRNA-Seq tumor CPT0265630010 81f20c51-e19d-4cb4-a74d-59c4aff9a5c9_mirnaseq_gdc_realn.bam 259059313 BAM harmonized CPTAC3 4f77b53c-7b32-42b1-9ff3-eac29474ec55 3e27b38ed0164f9828a18096078178e1 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04090.RNA-Seq.chimeric.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.chimeric.gdc_realn.bam 427303355 BAM chimeric harmonized CPTAC3 dfe89388-1cd3-4df2-81ed-c9d9e8bfd5ff 0a1dd17a60be3f5c75e6705568b4d691 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04090.RNA-Seq.genomic.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.genomic.gdc_realn.bam 10698751629 BAM genomic harmonized CPTAC3 f0b47847-a2a9-47f5-834a-dade63f2d241 19bff7907bd66704524860b06d973696 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04090.RNA-Seq.S9_L008_R1.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R1_001.fastq.gz 4945213572 FASTQ S9_L008_R1 unaligned CPTAC3 9a8aec46-4acd-4c73-96c3-ab521a638114 a679c5c2f2ae92dd0b120c3a216ee245 {"aliquot_tag": "ALQ_2a84f9e7", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04090.RNA-Seq.S9_L008_R2.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R2_001.fastq.gz 5597226556 FASTQ S9_L008_R2 unaligned CPTAC3 c3e5d01b-6efa-4a68-9f27-d3d6955b01e5 6be22923c70e6dc8ca956f3c7cfef44f {"aliquot_tag": "ALQ_2a84f9e7", "sample": "S9", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04090.RNA-Seq.transcriptome.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.transcriptome.gdc_realn.bam 10939001948 BAM transcriptome harmonized CPTAC3 015180a3-5a78-4913-ad11-0495ed1110e6 81227cc660238edc29d819ac47dd5239 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04090.WGS.N C3L-04090 GBM WGS blood_normal CPT0264100002 CPT0264100002.WholeGenome.RP-2158.bam 28096864252 BAM aligned CPTAC3 38c663ab-d41b-4605-80f4-21334e899a9f 0ede58443a662208c3128f3d3fa44a25 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal"} -C3L-04090.WGS.N.hg38 C3L-04090 GBM WGS blood_normal CPT0264100002 cd982953-0066-4729-91e5-ccf5800c6287_wgs_gdc_realn.bam 83572926292 BAM harmonized CPTAC3 b005d5ce-da55-4484-b85f-33250d2f2f93 9155a20fa7b7f69e4a5cb35558e35e29 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal"} -C3L-04090.WGS.T C3L-04090 GBM WGS tumor CPT0265630007 CPT0265630007.WholeGenome.RP-2158.bam 31570550494 BAM aligned CPTAC3 281321cf-ff95-40ef-973a-1cdd931c914e b9d1b2442da75249ab30e8c1d21ade6e {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor"} -C3L-04090.WGS.T.hg38 C3L-04090 GBM WGS tumor CPT0265630007 0dc0882f-2967-4268-afaa-eff7fa83e921_wgs_gdc_realn.bam 92533479255 BAM harmonized CPTAC3 c3ab0336-b7dc-4739-a99c-faf95f70764c abf299e827493c16910e60a9155625cf {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor"} -C3L-04090.WXS.N C3L-04090 GBM WXS blood_normal CPT0264100002 CPT0264100002.WholeExome.RP-1303.bam 24947982395 BAM aligned CPTAC3 f5750679-d8a2-4b5e-be9e-6663efc7225c f20065edb8cbf1f2003cbcebfb9afc98 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal"} -C3L-04090.WXS.N.hg38 C3L-04090 GBM WXS blood_normal CPT0264100002 cd982953-0066-4729-91e5-ccf5800c6287_wxs_gdc_realn.bam 34156625605 BAM harmonized CPTAC3 cb068c31-d894-43ba-b308-3b1f97d8c15e 7d93d13f61539407ea5f7bf969243955 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal"} -C3L-04090.WXS.T C3L-04090 GBM WXS tumor CPT0265630007 CPT0265630007.WholeExome.RP-1303.bam 20161190594 BAM aligned CPTAC3 494ab4e9-c16b-4840-8abd-fd9e5e21cb99 56a9ee4207a1da6678ca47f27a7ba31d {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor"} -C3L-04090.WXS.T.hg38 C3L-04090 GBM WXS tumor CPT0265630007 0dc0882f-2967-4268-afaa-eff7fa83e921_wxs_gdc_realn.bam 28215868388 BAM harmonized CPTAC3 6b65e8bd-213a-4815-b2cc-ff4733cccf2d 6360c393021ab327fef4c8e3cff745fa {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor"} -C3L-04197.RNA-Seq.chimeric.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.chimeric.gdc_realn.bam 28742984 BAM chimeric harmonized CPTAC3 3de50244-c357-48dc-bc56-fef5441ae010 a126273bf229b5b6350f4005424ba4d4 {"aliquot_tag": "ALQ_edb17293", "gdc_sample_type": "Primary Tumor"} -C3L-04197.RNA-Seq.genomic.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.genomic.gdc_realn.bam 5643450925 BAM genomic harmonized CPTAC3 c589f2ed-5125-479b-9d56-42477dffc3ff bd68a5bd579463a5f89595eac493eadb {"aliquot_tag": "ALQ_edb17293", "gdc_sample_type": "Primary Tumor"} -C3L-04197.RNA-Seq.S84_R1.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R1_001.fastq.gz 3321276793 FASTQ S84_R1 unaligned CPTAC3 1b6ff914-fe0c-458a-8759-26b379dc0fcb aac3ed22a7febcc0680aa5022d714369 {"aliquot_tag": "ALQ_edb17293", "sample": "S84", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04197.RNA-Seq.S84_R2.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R2_001.fastq.gz 3565568028 FASTQ S84_R2 unaligned CPTAC3 74b58e38-46bc-4fa0-a7ec-53e2db01d100 75c59f5dfc41c749fb7dfd9ff3813614 {"aliquot_tag": "ALQ_edb17293", "sample": "S84", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04197.RNA-Seq.transcriptome.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.transcriptome.gdc_realn.bam 5222426068 BAM transcriptome harmonized CPTAC3 a66f1468-f513-4d72-97a6-6202472c60fa 3501f78b38a68d572367bbddf7cd622f {"aliquot_tag": "ALQ_edb17293", "gdc_sample_type": "Primary Tumor"} -C3L-04198.RNA-Seq.chimeric.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.chimeric.gdc_realn.bam 140328157 BAM chimeric harmonized CPTAC3 0cbcc20d-432f-4c7a-8667-de7225bc599f 717794acd9ba6e3778e9a4dd89a23c9e {"aliquot_tag": "ALQ_99dd1f57", "gdc_sample_type": "Primary Tumor"} -C3L-04198.RNA-Seq.genomic.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.genomic.gdc_realn.bam 7698687774 BAM genomic harmonized CPTAC3 300646ca-4d72-499a-b866-ff0143e2dd26 5164d976b32b91892140acb1c4ceb91a {"aliquot_tag": "ALQ_99dd1f57", "gdc_sample_type": "Primary Tumor"} -C3L-04198.RNA-Seq.S87_R1.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R1_001.fastq.gz 4073180584 FASTQ S87_R1 unaligned CPTAC3 5ffb7de9-8677-4ab5-8409-27c6315efe3c a82c58eb2c813eafc6213c2d5ec77c5d {"aliquot_tag": "ALQ_99dd1f57", "sample": "S87", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04198.RNA-Seq.S87_R2.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R2_001.fastq.gz 4170004731 FASTQ S87_R2 unaligned CPTAC3 d9fedabc-4000-44ca-a128-9c788b5c6184 c48a77aedda5269c495f0aa7d754f02e {"aliquot_tag": "ALQ_99dd1f57", "sample": "S87", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04198.RNA-Seq.transcriptome.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.transcriptome.gdc_realn.bam 4317461849 BAM transcriptome harmonized CPTAC3 223578e2-b602-4d09-b180-b203ab88b509 2125e97b1c5652b4f9f58c675199098e {"aliquot_tag": "ALQ_99dd1f57", "gdc_sample_type": "Primary Tumor"} -C3L-04199.RNA-Seq.chimeric.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.chimeric.gdc_realn.bam 158388587 BAM chimeric harmonized CPTAC3 1e9dc16f-295c-45f2-80c0-f94b0ccd10b8 120b46cabd67f6b989e78bedc9a80e11 {"aliquot_tag": "ALQ_d7a9e289", "gdc_sample_type": "Primary Tumor"} -C3L-04199.RNA-Seq.genomic.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.genomic.gdc_realn.bam 10544135703 BAM genomic harmonized CPTAC3 121f2ed1-cb2e-4d0f-ab7c-d2a0944dc821 edf8ffc8db15c48166a4c6c86acfacfd {"aliquot_tag": "ALQ_d7a9e289", "gdc_sample_type": "Primary Tumor"} -C3L-04199.RNA-Seq.S77_R1.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R1_001.fastq.gz 6773487889 FASTQ S77_R1 unaligned CPTAC3 412d9433-a40f-425b-a16b-ecd6ae4dccff ae54f8c762b3e3ea8b61bc4e83e57613 {"aliquot_tag": "ALQ_d7a9e289", "sample": "S77", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04199.RNA-Seq.S77_R2.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R2_001.fastq.gz 7054423596 FASTQ S77_R2 unaligned CPTAC3 77f0aee6-1661-4c2d-958f-16e073935dd2 8e89fade1183b3cbf362c7f71efb45a0 {"aliquot_tag": "ALQ_d7a9e289", "sample": "S77", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04199.RNA-Seq.transcriptome.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.transcriptome.gdc_realn.bam 7505462055 BAM transcriptome harmonized CPTAC3 93a2efe1-cb3e-4a5b-8372-bc036683ae3b 16285eb411786115f01b2703c1b43572 {"aliquot_tag": "ALQ_d7a9e289", "gdc_sample_type": "Primary Tumor"} -C3L-04213.MethArray.Green.T C3L-04213 GBM Methylation_Array tumor CPT0277180006 204367490030_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99a416e8-f01b-4505-9f64-75fdd5c86d5b 8d552955eeb20ee0366d8e04097d7738 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor"} -C3L-04213.MethArray.Red.T C3L-04213 GBM Methylation_Array tumor CPT0277180006 204367490030_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 61764414-eaf2-4995-aab3-6177e0ce485e 94c47d82a307a15054c123e533217b76 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor"} -C3L-04213.miRNA-Seq.S7_L001_R1.T C3L-04213 GBM miRNA-Seq tumor CPT0277180009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 247132876 BAM S7_L001_R1 unaligned CPTAC3 4a732346-4aee-42d0-80e9-32fe22a79b68 0110a279fa78eaf70cae0563b4113dcb {"aliquot_tag": "ALQ_7ba3601c", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04213.miRNA-Seq.T.hg38 C3L-04213 GBM miRNA-Seq tumor CPT0277180009 5bdfbd50-8f9c-4421-afae-ad61bea3cbf7_mirnaseq_gdc_realn.bam 273383199 BAM harmonized CPTAC3 5a233130-f032-4f93-a4aa-a587f6b89b81 c0e3a4caaea580aba239e59007b8ccd4 {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor"} -C3L-04213.RNA-Seq.chimeric.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.chimeric.gdc_realn.bam 31570461 BAM chimeric harmonized CPTAC3 d9c7557b-9617-49ee-a8f7-f87425833221 af4c79f805edfb612415d625e807534c {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor"} -C3L-04213.RNA-Seq.genomic.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.genomic.gdc_realn.bam 7552304278 BAM genomic harmonized CPTAC3 53267dff-af2f-45ce-b5f2-61859fc06cf6 4edb02f9dea24bf12c065d4a8a68ccc3 {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor"} -C3L-04213.RNA-Seq.S23_L006_R1.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ S23_L006_R1 unaligned CPTAC3 3a18317d-3520-42dc-8003-f9561853b8dc 37e5acf5c7f949bc8b179a366242afb5 {"aliquot_tag": "ALQ_7ba3601c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04213.RNA-Seq.S23_L006_R2.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ S23_L006_R2 unaligned CPTAC3 fb64ce39-84ad-40df-801d-f1e1146356a0 d5486d52ba6fbf1c59bf8f520c3cdb03 {"aliquot_tag": "ALQ_7ba3601c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04213.RNA-Seq.transcriptome.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.transcriptome.gdc_realn.bam 6018935824 BAM transcriptome harmonized CPTAC3 b0f1b70e-46b3-4348-a4c4-e40864f47f40 12a26609e103ecb39cdd3cfde63a32db {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor"} -C3L-04213.WGS.N C3L-04213 GBM WGS blood_normal CPT0277280002 CPT0277280002.WholeGenome.RP-2158.bam 27307720953 BAM aligned CPTAC3 9016f6fc-f3f7-4ef3-b81e-f8d54cc931f2 abdded50a59683701393aed02d94942f {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04213.WGS.N.hg38 C3L-04213 GBM WGS blood_normal CPT0277280002 1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wgs_gdc_realn.bam 79615801627 BAM harmonized CPTAC3 e4a20d36-782a-4b14-a985-15b48497ff4e a3a5a591fff5a13d17e157b00ca7b40d {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04213.WGS.T C3L-04213 GBM WGS tumor CPT0277180006 CPT0277180006.WholeGenome.RP-2158.bam 21897875310 BAM aligned CPTAC3 fa0facad-8fbc-4a5d-96c2-8411703567db 9379b0efdd9bc7ee849ca36c91202ce2 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor"} -C3L-04213.WGS.T.hg38 C3L-04213 GBM WGS tumor CPT0277180006 c7af6007-1e13-438f-a4fe-d011d96669e3_wgs_gdc_realn.bam 65721149462 BAM harmonized CPTAC3 bb4472a3-b931-436b-a6f2-028f0e236229 b99b4a6035f3ac0b8e337daf4bb739c6 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor"} -C3L-04213.WXS.N C3L-04213 GBM WXS blood_normal CPT0277280002 CPT0277280002.WholeExome.RP-1303.bam 22097690328 BAM aligned CPTAC3 ac9dc9ca-abc7-466b-b437-6c0ad01f54a8 53e77bc1116781b243dd7f107ba6217c {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04213.WXS.N.hg38 C3L-04213 GBM WXS blood_normal CPT0277280002 1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wxs_gdc_realn.bam 30102627292 BAM harmonized CPTAC3 3cc11d4a-5a91-438c-9143-57a046ea5a10 ce7fc4fbc1f2b50ed449a29959b6b194 {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04213.WXS.T C3L-04213 GBM WXS tumor CPT0277180006 CPT0277180006.WholeExome.RP-1303.bam 18647890722 BAM aligned CPTAC3 37eee658-03bf-40a1-9326-cf26d313e317 6edc71f9a21ec9cd3907b933b22c9517 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor"} -C3L-04213.WXS.T.hg38 C3L-04213 GBM WXS tumor CPT0277180006 c7af6007-1e13-438f-a4fe-d011d96669e3_wxs_gdc_realn.bam 26312189759 BAM harmonized CPTAC3 7c9986e7-ede7-4495-974b-2095f534a7f6 9b4bc59e3836c2d74d7e95495d477215 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor"} -C3L-04216.MethArray.Green.A C3L-04216 LSCC Methylation_Array tissue_normal CPT0304660007 204367470132_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 346edda4-9ae0-40d7-ba73-92973eec1e3b b27cce8ec17965262e943bf34653355c {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04216.MethArray.Green.T C3L-04216 LSCC Methylation_Array tumor CPT0304620007 204367490056_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 a839c1fd-300d-471d-9bd9-1190b0c5616c 369c5f2eea121afe825004b15c3feff0 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor"} -C3L-04216.MethArray.Red.A C3L-04216 LSCC Methylation_Array tissue_normal CPT0304660007 204367470132_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 eb46a8bd-914c-4670-870b-8bd5403d4932 816bca7081988bee69c593fb4fc3a291 {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04216.MethArray.Red.T C3L-04216 LSCC Methylation_Array tumor CPT0304620007 204367490056_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 ef8e860e-f2a7-489b-a32f-b55a4951308a 1ee824d5d62e745509b60c78422d47d9 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor"} -C3L-04216.miRNA-Seq.S22_L001_R1.T C3L-04216 LSCC miRNA-Seq tumor CPT0304620010 200325_UNC31-K00269_0272_AHHC2NBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 199514132 BAM S22_L001_R1 unaligned CPTAC3 c3a12fb8-1db3-4e56-824b-e494e3b98776 a86a7be5b5f6d33b1f3475f421442197 {"aliquot_tag": "ALQ_6087c627", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04216.miRNA-Seq.T.hg38 C3L-04216 LSCC miRNA-Seq tumor CPT0304620010 7f05998c-a7cb-4435-817d-0d409b45d832_mirnaseq_gdc_realn.bam 218566365 BAM harmonized CPTAC3 64b100f8-dc15-4835-8027-d896ed7b53b5 f7e00c2c9d2234f473dd2efbe5f2e69a {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor"} -C3L-04216.RNA-Seq.chimeric.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.chimeric.gdc_realn.bam 42568137 BAM chimeric harmonized CPTAC3 d7c629ef-90a1-46b5-9f1a-dab384b745a2 360c11f48624d09b81eccbba2bd25085 {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor"} -C3L-04216.RNA-Seq.genomic.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.genomic.gdc_realn.bam 7076559349 BAM genomic harmonized CPTAC3 b2ae43d7-46f3-4c41-a7ac-5a59daa3fedc e4432759c495db3815922de2446f9718 {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor"} -C3L-04216.RNA-Seq.S30_L008_R1.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R1_001.fastq.gz 3391145613 FASTQ S30_L008_R1 unaligned CPTAC3 2b801f00-6d57-4304-b6f0-b622e817a416 4722af6fab925e3871defd1690a1cc7f {"aliquot_tag": "ALQ_6087c627", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04216.RNA-Seq.S30_L008_R2.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R2_001.fastq.gz 3498782473 FASTQ S30_L008_R2 unaligned CPTAC3 56e142e2-4864-49a1-ad2e-475bf798ac98 11c83dbda791b3b768536a76a1c89014 {"aliquot_tag": "ALQ_6087c627", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04216.RNA-Seq.transcriptome.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.transcriptome.gdc_realn.bam 9038111446 BAM transcriptome harmonized CPTAC3 553262b4-3f14-4511-a044-17a1d2b2b9f0 74fc7dd0f616e71455113e38344e0ae4 {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor"} -C3L-04216.WGS.N C3L-04216 LSCC WGS blood_normal CPT0304770002 CPT0304770002.WholeGenome.RP-2158.bam 29678900313 BAM aligned CPTAC3 30fdf796-1a1c-4616-84ec-fec8fffc2208 d5179392a7b000ee70ad01898e0094a8 {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal"} -C3L-04216.WGS.N.hg38 C3L-04216 LSCC WGS blood_normal CPT0304770002 a2382a43-bed8-4b19-89cd-a00478fe45be_wgs_gdc_realn.bam 88687570987 BAM harmonized CPTAC3 b20b030c-97f3-4a04-bac4-a3139d0bf489 e3a4b54cb385fc06742ab52da5352a71 {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal"} -C3L-04216.WGS.T C3L-04216 LSCC WGS tumor CPT0304620007 CPT0304620007.WholeGenome.RP-2158.bam 25798342330 BAM aligned CPTAC3 5babcc1c-b13a-4ac1-9002-97453f096e63 577f7c40bed9e73ecb4e9f1479c09210 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor"} -C3L-04216.WGS.T.hg38 C3L-04216 LSCC WGS tumor CPT0304620007 44f13f39-00b5-4c5b-9582-e06616a7f968_wgs_gdc_realn.bam 73775630867 BAM harmonized CPTAC3 2fc1dd2f-7571-42ee-820c-68341519e90c 175ca3d882bc3b6ef4309c2e6c2121a8 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor"} -C3L-04216.WXS.A C3L-04216 LSCC WXS tissue_normal CPT0304660007 CPT0304660007.WholeExome.RP-1303.bam 19118619135 BAM aligned CPTAC3 273d95d0-f65f-4356-80a7-361e1549048d 6b2203be32e0f6d6634d1f583a187419 {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04216.WXS.A.hg38 C3L-04216 LSCC WXS tissue_normal CPT0304660007 8765621c-f7c5-4676-8cb8-0236550536b3_wxs_gdc_realn.bam 26748455331 BAM harmonized CPTAC3 2d53851d-0b3f-479d-975f-45e6aa26edc2 c0e22ecabb06b7ac7f4a3e1fcba051bb {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04216.WXS.N C3L-04216 LSCC WXS blood_normal CPT0304770002 CPT0304770002.WholeExome.RP-1303.bam 21474490351 BAM aligned CPTAC3 c9489fce-1d85-45e0-aa6c-4ed549552072 42999502121bf99b8a170bfa52a951da {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal"} -C3L-04216.WXS.N.hg38 C3L-04216 LSCC WXS blood_normal CPT0304770002 a2382a43-bed8-4b19-89cd-a00478fe45be_wxs_gdc_realn.bam 29005630468 BAM harmonized CPTAC3 0021b0fd-e27f-4263-a44f-0af1347d4e39 644d92785e1b44d067812fe4d05f8768 {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal"} -C3L-04216.WXS.T C3L-04216 LSCC WXS tumor CPT0304620007 CPT0304620007.WholeExome.RP-1303.bam 22409704447 BAM aligned CPTAC3 8f9ec5e6-d77c-492f-8d9c-63e4d389bfe0 6d73d55128beafe4b6931daaa5c9688c {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor"} -C3L-04216.WXS.T.hg38 C3L-04216 LSCC WXS tumor CPT0304620007 44f13f39-00b5-4c5b-9582-e06616a7f968_wxs_gdc_realn.bam 30739432378 BAM harmonized CPTAC3 4c7de826-5434-4e0c-85bf-cc0a9ee5f3fa 67dd3d611e1db29f9f6ee81edac4de3d {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor"} -C3L-04231.MethArray.Green.Tbm C3L-04231 AML Methylation_Array tumor_bone_marrow CPT0275480002 205555390164_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 39b9014d-6cd9-4b3c-a999-da8abea4e182 9a1755dabfffeae5a968799937123c86 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.MethArray.Red.Tbm C3L-04231 AML Methylation_Array tumor_bone_marrow CPT0275480002 205555390164_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 17ed8321-2e2b-4c73-a191-86dbf630731f fe605439d2f8711bf748eeb59773cdac {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.miRNA-Seq.S28_L002_R1.Tbm C3L-04231 AML miRNA-Seq tumor_bone_marrow CPT0275490002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAACTA_S28_L002_R1_001.unaln.bam 362742737 BAM S28_L002_R1 unaligned CPTAC3 ebfc821e-fffb-4d1b-9ffb-98f71a857c3d 1feef8404ecf8b36f18bf3ce0c737137 {"aliquot_tag": "ALQ_164310be", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.miRNA-Seq.Tbm.hg38 C3L-04231 AML miRNA-Seq tumor_bone_marrow CPT0275490002 ebbadb06-3614-4cdc-beac-b879e262503d_mirnaseq_gdc_realn.bam 386944131 BAM harmonized CPTAC3 b47ac028-a076-4914-b989-34205b47e69e 71d28a1c1e81715f3839a0a5991daa02 {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.RNA-Seq.chimeric.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.chimeric.gdc_realn.bam 38854268 BAM chimeric harmonized CPTAC3 c1d61c89-3d8b-4d7d-90ce-d26498c06060 d72f19a8f75bffb52cfdb23142a5a07a {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.RNA-Seq.genomic.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.genomic.gdc_realn.bam 8267197181 BAM genomic harmonized CPTAC3 8bcc6f9d-4535-4009-81bb-f86deadd16ee 2e4a72bee8caa3a073ce12c2e01fd5da {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.RNA-Seq.S63_L008_R1.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R1_001.fastq.gz 3267834385 FASTQ S63_L008_R1 unaligned CPTAC3 0ce5469b-6555-41ad-b583-abacf090c5ff f0ece8831346e01a468bc7efdd792611 {"aliquot_tag": "ALQ_164310be", "sample": "S63", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.RNA-Seq.S63_L008_R2.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R2_001.fastq.gz 3783588039 FASTQ S63_L008_R2 unaligned CPTAC3 14695f91-0a51-4d0d-883e-5c1fe933df93 7a970ac1de55d0fdf6538a45acec2099 {"aliquot_tag": "ALQ_164310be", "sample": "S63", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.RNA-Seq.transcriptome.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.transcriptome.gdc_realn.bam 7683392796 BAM transcriptome harmonized CPTAC3 1c17f6f6-acf4-484a-a466-340cc0305d43 eac31a422b3107a6530b3a7c5ac2a1db {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.WGS.Nbc C3L-04231 AML WGS buccal_normal CPT0275550001 CPT0275550001.WholeGenome.RP-2158.bam 55073835986 BAM aligned CPTAC3 9b1efd93-9766-48e1-afd2-4b8371bd5881 0b329a463eff2f44195f18dcb3ee6dbd {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04231.WGS.Nbc.hg38 C3L-04231 AML WGS buccal_normal CPT0275550001 3f65c678-a826-4ffa-b11a-480424b74dec_wgs_gdc_realn.bam 163200210374 BAM harmonized CPTAC3 529ad08a-dedd-4191-abe7-f747e9306138 91bbc9bd17e00f6a346ffa780cb8d79f {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04231.WGS.Tbm C3L-04231 AML WGS tumor_bone_marrow CPT0275480002 CPT0275480002.WholeGenome.RP-2158.bam 47398493399 BAM aligned CPTAC3 33099947-c5fc-4a12-91f4-978b9a511006 6c62161e272a6cbc5dd0cf87ef9ec007 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.WGS.Tbm.hg38 C3L-04231 AML WGS tumor_bone_marrow CPT0275480002 83b06238-a197-43b3-b710-4b287a9ad2c8_wgs_gdc_realn.bam 141972851013 BAM harmonized CPTAC3 ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c a900764d1c335d737fdc7ba018b4410b {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.WXS.Nbc C3L-04231 AML WXS buccal_normal CPT0275550001 CPT0275550001.WholeExome.RP-1303.bam 23015871457 BAM aligned CPTAC3 d235cade-b243-4d69-a57c-c28a7c071322 20ea20f647fb1daef9f06b6a1b189e9d {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04231.WXS.Nbc.hg38 C3L-04231 AML WXS buccal_normal CPT0275550001 3f65c678-a826-4ffa-b11a-480424b74dec_wxs_gdc_realn.bam 31967721084 BAM harmonized CPTAC3 16ae477a-e93e-467b-bcdc-4b3667ea8056 edd1bdf4f3642c492280740cf34dc8c4 {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04231.WXS.Tbm C3L-04231 AML WXS tumor_bone_marrow CPT0275480002 CPT0275480002.WholeExome.RP-1303.bam 21583087692 BAM aligned CPTAC3 ded479ec-b8ff-42b8-948b-e32e36108f49 679c9f3d5fadeccfcf8dc73808f94e47 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04231.WXS.Tbm.hg38 C3L-04231 AML WXS tumor_bone_marrow CPT0275480002 83b06238-a197-43b3-b710-4b287a9ad2c8_wxs_gdc_realn.bam 30045221236 BAM harmonized CPTAC3 b3326b22-689d-4b80-baba-b22e6e41b57e 42cce95afe377f1a490e4b0a2625f7b0 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.MethArray.Green.Tbm C3L-04236 AML Methylation_Array tumor_bone_marrow CPT0275630002 205555390128_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fa65b946-00be-464e-acc0-b3e20eed6bd5 1690625867b31b6a3fedc0f8a4c989ff {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.MethArray.Red.Tbm C3L-04236 AML Methylation_Array tumor_bone_marrow CPT0275630002 205555390128_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 4c03850c-8c98-4e30-92b7-b449f8639af7 08c2f712dc1fe9925960eae045874a1f {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.miRNA-Seq.S21_L001_R1.Tbm C3L-04236 AML miRNA-Seq tumor_bone_marrow CPT0275640002 210702_UNC32-K00270_0289_AHKJ22BBXY_TTAGGC_S21_L001_R1_001.unaln.bam 240935302 BAM S21_L001_R1 unaligned CPTAC3 be935ea4-6a52-453b-9976-0c3c7a500396 463250a055184bd6dd6d93a3dcb38dc8 {"aliquot_tag": "ALQ_a31b7504", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.miRNA-Seq.Tbm.hg38 C3L-04236 AML miRNA-Seq tumor_bone_marrow CPT0275640002 5b563aa1-ba83-42d2-804e-37c96f35f282_mirnaseq_gdc_realn.bam 267716450 BAM harmonized CPTAC3 39ef4062-7a21-4ddb-80a6-1aa541968c23 73ffd6a026cce3569ab11863620450da {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.RNA-Seq.chimeric.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.chimeric.gdc_realn.bam 64437419 BAM chimeric harmonized CPTAC3 62a9ac70-cb62-4e39-b624-5f52e6d1f4a6 235307044f99213a0cf893e3d5201ea6 {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.RNA-Seq.genomic.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.genomic.gdc_realn.bam 9715154896 BAM genomic harmonized CPTAC3 148940bd-eaec-4e67-b622-ea81f2f0a269 f8464885381d1e4e2f405c771f76ad78 {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.RNA-Seq.S61_L008_R1.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R1_001.fastq.gz 4506933232 FASTQ S61_L008_R1 unaligned CPTAC3 53b6301b-9fe3-4e09-aa52-ad01479e1d61 9314b796b8f2c5e353a93c290b01ac65 {"aliquot_tag": "ALQ_a31b7504", "sample": "S61", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.RNA-Seq.S61_L008_R2.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R2_001.fastq.gz 5151304611 FASTQ S61_L008_R2 unaligned CPTAC3 d085633a-e3b6-4387-a6ea-6da417fb8c1e 85b09adbbea6c0910c07dadd6e7e12eb {"aliquot_tag": "ALQ_a31b7504", "sample": "S61", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.RNA-Seq.transcriptome.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.transcriptome.gdc_realn.bam 8836282604 BAM transcriptome harmonized CPTAC3 1af308f0-6297-45de-a808-fff5e89c6a16 3a8d599b56ecabbc3f363b2e2e57f24c {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.WGS.Nbc C3L-04236 AML WGS buccal_normal CPT0275680002 CPT0275680002.WholeGenome.RP-2158.bam 63433547664 BAM aligned CPTAC3 a31026af-7909-41b5-94f4-dbecfa51029c e1dd91cbbfa3204114a231f69dbb90f7 {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04236.WGS.Nbc.hg38 C3L-04236 AML WGS buccal_normal CPT0275680002 2a94f3f0-5ef4-4443-9af7-d26820695de7_wgs_gdc_realn.bam 181836818026 BAM harmonized CPTAC3 fd22f225-d998-47b7-894b-79a9d7ac4109 dad459dee104e1374520d1c5329c759c {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04236.WGS.Tbm C3L-04236 AML WGS tumor_bone_marrow CPT0275630002 CPT0275630002.WholeGenome.RP-2158.bam 54552524185 BAM aligned CPTAC3 7c5ad9de-75b0-4582-a763-23415a198b90 05f1bcaebfbfcf592cd5ee733d9723a0 {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.WGS.Tbm.hg38 C3L-04236 AML WGS tumor_bone_marrow CPT0275630002 20c5a330-281b-4b20-9f44-f52e66634199_wgs_gdc_realn.bam 164129559131 BAM harmonized CPTAC3 88ec4690-af60-4ef8-970e-324e05ed6101 07b209b35744ef8fa018c410f65392c0 {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.WXS.Nbc C3L-04236 AML WXS buccal_normal CPT0275680002 CPT0275680002.WholeExome.RP-1303.bam 24233447816 BAM aligned CPTAC3 c1b93911-88aa-46a3-af54-d8b9180e1a15 534c75805b0d5a7d0f06b03a0fcd7605 {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04236.WXS.Nbc.hg38 C3L-04236 AML WXS buccal_normal CPT0275680002 2a94f3f0-5ef4-4443-9af7-d26820695de7_wxs_gdc_realn.bam 34079235614 BAM harmonized CPTAC3 da0e8d5a-812d-47f6-88c6-4dbf8db367a3 4f98d9a3dc5bacca925f7ac1edd6d6f9 {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04236.WXS.Tbm C3L-04236 AML WXS tumor_bone_marrow CPT0275630002 CPT0275630002.WholeExome.RP-1303.bam 21851624507 BAM aligned CPTAC3 7dc4df2a-fd64-45b9-bff2-770d08248e71 dcfb5f4fe5910aed3512024b91f3ee3b {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04236.WXS.Tbm.hg38 C3L-04236 AML WXS tumor_bone_marrow CPT0275630002 20c5a330-281b-4b20-9f44-f52e66634199_wxs_gdc_realn.bam 30235908890 BAM harmonized CPTAC3 3158eeeb-311c-4bd3-8a9f-439a902f49ab e07442f363330669ce2689e0bb1d9c02 {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.MethArray.Green.Tbm C3L-04241 AML Methylation_Array tumor_bone_marrow CPT0259710002 203561450068_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 18477cec-d0f7-42f5-8ec5-a2f19873bead fd5ae9f0a2b988e95658f450c524b312 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.MethArray.Red.Tbm C3L-04241 AML Methylation_Array tumor_bone_marrow CPT0259710002 203561450068_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 5c9d3c73-a701-42b9-9d1a-4b8ceddb9975 c80f9de0715971b50b99840f045eb625 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.miRNA-Seq.S48_L003_R1.Tbm C3L-04241 AML miRNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGGCA_S48_L003_R1_001.unaln.bam 200898373 BAM S48_L003_R1 unaligned CPTAC3 b7b2e8bc-ff9d-4bbf-9d6a-89ece0597b83 aa85056ee366e4d26bca491e87a1e9c0 {"aliquot_tag": "ALQ_62823e08", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.miRNA-Seq.Tbm.hg38 C3L-04241 AML miRNA-Seq tumor_bone_marrow CPT0259720002 25841b59-60e7-4405-ab21-7fd5caffbb78_mirnaseq_gdc_realn.bam 226675275 BAM harmonized CPTAC3 f92dfe36-b1fd-42f9-b1af-32ff6383c43c ad4151ac90212938f5eebcfab0a7f551 {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.RNA-Seq.chimeric.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.chimeric.gdc_realn.bam 31300459 BAM chimeric harmonized CPTAC3 257bbf4d-ffff-4622-946d-2e8ad1c3426a 90e94d239545faba6dbcf0503d3de7ea {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.RNA-Seq.genomic.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.genomic.gdc_realn.bam 7676738392 BAM genomic harmonized CPTAC3 ee1cd012-0f56-4b5e-8964-695153c4d291 94aecff8f6634e89518de77d7bf9eac8 {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.RNA-Seq.S23_L006_R1.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R1_001.fastq.gz 3702110696 FASTQ S23_L006_R1 unaligned CPTAC3 ad42ec5f-8d8a-4ead-81dd-6c3b8c515d6a 02c998e12985f4a5f348e17eb424210f {"aliquot_tag": "ALQ_62823e08", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.RNA-Seq.S23_L006_R2.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R2_001.fastq.gz 4122426618 FASTQ S23_L006_R2 unaligned CPTAC3 c1340255-b0c0-47e4-b1ce-8886bff88015 71bb92d64009efda185402abcc9437c0 {"aliquot_tag": "ALQ_62823e08", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.RNA-Seq.transcriptome.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.transcriptome.gdc_realn.bam 8159988287 BAM transcriptome harmonized CPTAC3 f13d8f2b-8c2e-43a9-a9b9-70cbd3539a4c f1492813348229d3932d24b28dcd617a {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.WGS.Nbc C3L-04241 AML WGS buccal_normal CPT0259700003 CPT0259700003.WholeGenome.RP-1303.bam 81167848749 BAM aligned CPTAC3 5f3f298e-5365-4171-b289-96e0f9566b1a 80b88e1006b5330f063bb33efadf1069 {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04241.WGS.Nbc.hg38 C3L-04241 AML WGS buccal_normal CPT0259700003 d3d6f5df-52dd-408b-b664-4be0cf953c37_wgs_gdc_realn.bam 117181628293 BAM harmonized CPTAC3 70432235-b33a-4105-85d6-fc7d029cf3bd 0d6e886965b97c47905a8c9a74ab3ae3 {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04241.WGS.Tbm C3L-04241 AML WGS tumor_bone_marrow CPT0259710002 CPT0259710002.WholeGenome.RP-1303.bam 99486661609 BAM aligned CPTAC3 5c9ebcfd-88d6-4db7-9763-82d79a66bab7 0fd8ae3ee089788b53d618d0338c0c90 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.WGS.Tbm.hg38 C3L-04241 AML WGS tumor_bone_marrow CPT0259710002 5d24733b-18fb-4f02-bad0-da55cd28c6cd_wgs_gdc_realn.bam 144605811743 BAM harmonized CPTAC3 f8b81384-68cc-4fac-93d9-1ce01c490390 0c3e316fdd694853b6e360c7308cb375 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.WXS.Nbc C3L-04241 AML WXS buccal_normal CPT0259700003 CPT0259700003.WholeExome.RP-1303.bam 31002100112 BAM aligned CPTAC3 4298ec25-fb35-468f-8378-028bbdbfc7dc deb23cffec4b638031467877d146e90d {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04241.WXS.Nbc.hg38 C3L-04241 AML WXS buccal_normal CPT0259700003 d3d6f5df-52dd-408b-b664-4be0cf953c37_wxs_gdc_realn.bam 43435398104 BAM harmonized CPTAC3 15389de3-14df-4a8a-ae92-d7fa0edf5a1d a447036812470f56cb6def506c51d9ca {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04241.WXS.Tbm C3L-04241 AML WXS tumor_bone_marrow CPT0259710002 CPT0259710002.WholeExome.RP-1303.bam 24272375779 BAM aligned CPTAC3 f7d75dcf-a15a-45b1-8887-c19101ad4745 0d37bbe2437f4ad0e2f00839ba1e17ad {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04241.WXS.Tbm.hg38 C3L-04241 AML WXS tumor_bone_marrow CPT0259710002 5d24733b-18fb-4f02-bad0-da55cd28c6cd_wxs_gdc_realn.bam 33953859058 BAM harmonized CPTAC3 67bb8beb-c429-4831-b486-bce2c83284cc aeea74863d352973a137cf14a4614e9e {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.MethArray.Green.Tbm C3L-04242 AML Methylation_Array tumor_bone_marrow CPT0230840002 203561450030_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 273adeee-fc6f-44bb-a57e-8f4413d0463e ab45e08c08ecb54391ec65c09501ea78 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.MethArray.Red.Tbm C3L-04242 AML Methylation_Array tumor_bone_marrow CPT0230840002 203561450030_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 62d5eb5d-a7a7-474e-a145-f54afba882e4 53935019f1de49b5853e424e307651b8 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.miRNA-Seq.S36_L002_R1.Tbm C3L-04242 AML miRNA-Seq tumor_bone_marrow CPT0230850002 190508_UNC31-K00269_0215_BH7FYKBBXY_CCAACA_S36_L002_R1_001.unaln.bam 248394139 BAM S36_L002_R1 unaligned CPTAC3 1dbce217-6bac-4469-8921-d223bc90c48b 1a4c47783cd7223172c867d49b06683e {"aliquot_tag": "ALQ_72031c99", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.miRNA-Seq.Tbm.hg38 C3L-04242 AML miRNA-Seq tumor_bone_marrow CPT0230850002 5979bb73-5a43-425f-8a15-74af8233df0a_mirnaseq_gdc_realn.bam 274508068 BAM harmonized CPTAC3 0efc5385-0943-4744-8f81-507a64361729 82bdbbd8f5db7ff576cc386003adfc2e {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.RNA-Seq.chimeric.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.chimeric.gdc_realn.bam 29200234 BAM chimeric harmonized CPTAC3 40f045c6-8262-4db0-bfa2-af1e355c8857 12faef5361a909820fc621be146e9248 {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.RNA-Seq.genomic.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.genomic.gdc_realn.bam 6901440569 BAM genomic harmonized CPTAC3 81c059a5-52e9-438e-95ff-96340adf8d22 c10668fab2983f2cc82c8e987fb9ee78 {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.RNA-Seq.S26_L008_R1.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R1_001.fastq.gz 3319720826 FASTQ S26_L008_R1 unaligned CPTAC3 63878f36-065b-45cc-91ea-b02efdc596e7 58c7bd9a3c0f3f35261ced00bca07e5b {"aliquot_tag": "ALQ_72031c99", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.RNA-Seq.S26_L008_R2.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R2_001.fastq.gz 3758726347 FASTQ S26_L008_R2 unaligned CPTAC3 a20b9a94-48ff-4cfc-bb4e-d6fa58bd57bf f22c5fcccb82f363e06305455d6e111e {"aliquot_tag": "ALQ_72031c99", "sample": "S26", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.RNA-Seq.transcriptome.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.transcriptome.gdc_realn.bam 9236262753 BAM transcriptome harmonized CPTAC3 04638d91-b320-409d-bc8a-aa1e2d5950f4 2b3025d6298e717f5b1234bb84809b47 {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.WGS.Nbc C3L-04242 AML WGS buccal_normal CPT0230940001 CPT0230940001.WholeGenome.RP-1303.bam 83574991047 BAM aligned CPTAC3 03eb172b-29c0-4bb3-8379-aff99e3802ec 772cb0d0f4e1344a1f61dfc3da2e9bc9 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04242.WGS.Nbc.hg38 C3L-04242 AML WGS buccal_normal CPT0230940001 dd99c0f7-e658-4da0-91c9-7e3d92929307_wgs_gdc_realn.bam 117643143494 BAM harmonized CPTAC3 716018d2-bee2-43e5-9184-12dba57c70a6 27d9ce8090039d394b488ed569b0f2b4 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04242.WGS.Tbm C3L-04242 AML WGS tumor_bone_marrow CPT0230840002 CPT0230840002.WholeGenome.RP-1303.bam 63895492486 BAM aligned CPTAC3 cd7248d8-56c6-4d69-ad83-dcfcf6e6dfee 39f3315cdb60fdf53d03daf7ec8e6798 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.WGS.Tbm.hg38 C3L-04242 AML WGS tumor_bone_marrow CPT0230840002 991fec13-5393-4eef-ab57-196468f6c8a2_wgs_gdc_realn.bam 92376395911 BAM harmonized CPTAC3 95aa6faf-55af-4f6b-b01d-260bb025fec7 4e4bd8e617dce4840f2bf693932ed2d2 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.WXS.Nbc C3L-04242 AML WXS buccal_normal CPT0230940001 CPT0230940001.WholeExome.RP-1303.bam 26687815105 BAM aligned CPTAC3 8104a347-a7e0-476c-9bb3-2b07a8147776 4075257dc149949b6c1e5c03ef47a184 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04242.WXS.Nbc.hg38 C3L-04242 AML WXS buccal_normal CPT0230940001 dd99c0f7-e658-4da0-91c9-7e3d92929307_wxs_gdc_realn.bam 36961780939 BAM harmonized CPTAC3 e9215e98-3c2f-4f4c-ac38-06ac91e1a611 1c8c7782dfea1897e6989737b0391976 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04242.WXS.Tbm C3L-04242 AML WXS tumor_bone_marrow CPT0230840002 CPT0230840002.WholeExome.RP-1303.bam 17007750217 BAM aligned CPTAC3 1931cfc8-3e04-45bf-a4a8-9cf7215e9965 7cd297e14aff4208ce36722ec92c69fc {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04242.WXS.Tbm.hg38 C3L-04242 AML WXS tumor_bone_marrow CPT0230840002 991fec13-5393-4eef-ab57-196468f6c8a2_wxs_gdc_realn.bam 24070335308 BAM harmonized CPTAC3 179afd3f-ea49-49ce-ad35-bd1198888fcd 8bf43660217e96db0b6c6b0e79dc912c {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.MethArray.Green.Tbm C3L-04244 AML Methylation_Array tumor_bone_marrow CPT0259780002 203561620087_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9db3e6da-5fc3-4102-8de7-4c921e3534ac 40d02ddd6a3ddf08df65021271821b0f {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.MethArray.Red.Tbm C3L-04244 AML Methylation_Array tumor_bone_marrow CPT0259780002 203561620087_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 f51aceb1-8ee6-4c20-9135-355dac8f96a7 97db087fe6799ffada8d24e660d07b26 {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.miRNA-Seq.S45_L002_R1.Tbm C3L-04244 AML miRNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCATTC_S45_L002_R1_001.unaln.bam 156614325 BAM S45_L002_R1 unaligned CPTAC3 3c7bf44b-5b09-4a3c-bcb7-428a500ac022 0f42279a298b7fa0098e381c303c6bd2 {"aliquot_tag": "ALQ_15520f19", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.miRNA-Seq.Tbm.hg38 C3L-04244 AML miRNA-Seq tumor_bone_marrow CPT0259790002 fad3bf5e-4e8d-4b22-92c6-21baefa32138_mirnaseq_gdc_realn.bam 173576447 BAM harmonized CPTAC3 9f5882ee-f636-4684-8073-364de737abdb 9d8092d8baca79a3a6e2efe93d3787cc {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.RNA-Seq.chimeric.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.chimeric.gdc_realn.bam 29900709 BAM chimeric harmonized CPTAC3 365be7e5-d1d0-40cb-9d52-babef3953301 95952db098d372bc96f948afe37e38ce {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.RNA-Seq.genomic.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.genomic.gdc_realn.bam 8030250235 BAM genomic harmonized CPTAC3 f5bc0ea8-208c-4dba-b61f-7c40d256ecd7 eee357fca1eb9e2b4e44fbb333db43cf {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.RNA-Seq.S20_L006_R1.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R1_001.fastq.gz 3815423785 FASTQ S20_L006_R1 unaligned CPTAC3 150db7f3-283f-45ee-935c-7bf039676f83 b055eef7ce1329326a4bd98c56d9d653 {"aliquot_tag": "ALQ_15520f19", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.RNA-Seq.S20_L006_R2.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R2_001.fastq.gz 4173033955 FASTQ S20_L006_R2 unaligned CPTAC3 dec8586b-52ac-42b0-89e7-80a0aeec0932 ed0435b38037b659723ce4c44d0ad342 {"aliquot_tag": "ALQ_15520f19", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.RNA-Seq.transcriptome.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.transcriptome.gdc_realn.bam 8340430953 BAM transcriptome harmonized CPTAC3 2d297e8e-d812-4824-9a11-6d6497ce5e4b da26c36eda11ee2e368132faa9a4c16a {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.WGS.Tbm C3L-04244 AML WGS tumor_bone_marrow CPT0259780002 CPT0259780002.WholeGenome.RP-1303.bam 66310918578 BAM aligned CPTAC3 b2b4884f-422d-464f-a705-e98bb52022f6 a9aca99343504522c34b6d67c7dd49ae {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.WGS.Tbm.hg38 C3L-04244 AML WGS tumor_bone_marrow CPT0259780002 bbb32038-b637-46bd-8bd8-73d8628a7605_wgs_gdc_realn.bam 97265442765 BAM harmonized CPTAC3 a290b432-363b-461f-9b1e-93f6508dce07 c190eac1960e18cbddc41c69c7e0bb62 {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.WXS.Nbc C3L-04244 AML WXS buccal_normal CPT0259770003 CPT0259770003.WholeExome.RP-1303.bam 27888814376 BAM aligned CPTAC3 ed4e27a8-4d52-495e-bf77-db933c583032 e6d3f5c96e6af956d4eaf657c4b3c4ad {"aliquot_tag": "ALQ_dd6581ee", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04244.WXS.Nbc.hg38 C3L-04244 AML WXS buccal_normal CPT0259770003 b2627576-0f3d-47e4-990c-13250340107e_wxs_gdc_realn.bam 38657495451 BAM harmonized CPTAC3 c72cec50-cbdf-466a-95fb-1dd6de93f6d4 6e730b87f4fbce74584b38ef0dc42189 {"aliquot_tag": "ALQ_dd6581ee", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04244.WXS.Tbm C3L-04244 AML WXS tumor_bone_marrow CPT0259780002 CPT0259780002.WholeExome.RP-1303.bam 23325976966 BAM aligned CPTAC3 5dc67c14-a3c4-4fc5-a26f-5e3779ec9775 b149d00f59b97173ccea2c790193e979 {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04244.WXS.Tbm.hg38 C3L-04244 AML WXS tumor_bone_marrow CPT0259780002 bbb32038-b637-46bd-8bd8-73d8628a7605_wxs_gdc_realn.bam 32408736328 BAM harmonized CPTAC3 947b36be-2be0-429c-a8ce-c78d1dedad79 7abc6c1e50386126782376f6219ab3ba {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.MethArray.Green.Tbm C3L-04245 AML Methylation_Array tumor_bone_marrow CPT0259920002 203561450046_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3242dd07-7437-4fe5-a35c-8f2a6bd21e1f 0e428b7f257f94466e0b3179ecf07e33 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.MethArray.Red.Tbm C3L-04245 AML Methylation_Array tumor_bone_marrow CPT0259920002 203561450046_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 903b16da-a645-40b4-8066-e001895f5e87 375dd0bd88167f2a18a9805656ec2ce1 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.miRNA-Seq.S46_L002_R1.Tbm C3L-04245 AML miRNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCCCGA_S46_L002_R1_001.unaln.bam 223199404 BAM S46_L002_R1 unaligned CPTAC3 8ff36bc5-b771-4cce-961b-ff35fd9d2408 0777e1eae488b8119ca500c03ebc8216 {"aliquot_tag": "ALQ_65e876c8", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.miRNA-Seq.Tbm.hg38 C3L-04245 AML miRNA-Seq tumor_bone_marrow CPT0259930002 c95192a1-679e-421c-a70c-f412243f6104_mirnaseq_gdc_realn.bam 248921331 BAM harmonized CPTAC3 30cf7bd5-1d7c-4045-9222-870eb1ea847f fecd511e325e46b8d4b6592a56ff341b {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.RNA-Seq.chimeric.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.chimeric.gdc_realn.bam 33616195 BAM chimeric harmonized CPTAC3 ab6ac690-1153-4e5c-8da5-b5e5cb06d938 0e793f32e0f85ca695fbe717dd83efb9 {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.RNA-Seq.genomic.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.genomic.gdc_realn.bam 7857182380 BAM genomic harmonized CPTAC3 6bedc81e-0f78-4dd9-9f08-10f71bf31269 b8cc9a2f885d21330c6b49057a6894de {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.RNA-Seq.S21_L006_R1.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R1_001.fastq.gz 4001270026 FASTQ S21_L006_R1 unaligned CPTAC3 6fb816c2-0f0c-4635-9d44-cb40175986d6 20bbd0a49b3a6faf759694bf5e0d32e4 {"aliquot_tag": "ALQ_65e876c8", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.RNA-Seq.S21_L006_R2.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R2_001.fastq.gz 4305412368 FASTQ S21_L006_R2 unaligned CPTAC3 aa6df772-e18a-47b2-b488-7a5c2b0b6cbf a17a3e4150a25ec28e4ceb09f5face0b {"aliquot_tag": "ALQ_65e876c8", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.RNA-Seq.transcriptome.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.transcriptome.gdc_realn.bam 9060230959 BAM transcriptome harmonized CPTAC3 b314e98e-b924-4451-b339-cba2ee391512 83d4c7bb3a65dd05c2b1e07055b890f3 {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.WGS.Nbc C3L-04245 AML WGS buccal_normal CPT0259910003 CPT0259910003.WholeGenome.RP-1303.bam 69235047437 BAM aligned CPTAC3 0712e1b6-9752-4162-9110-0958993ed412 db2af2ac276103eaaca23fb64f7c2700 {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04245.WGS.Nbc.hg38 C3L-04245 AML WGS buccal_normal CPT0259910003 8899c961-0df9-45dd-ab06-13a0365ac9cc_wgs_gdc_realn.bam 107260033742 BAM harmonized CPTAC3 9a88768d-4af8-464d-ad42-eb8a9ae6b7af dd0441eb6a7ea5801ac1efa3cb528dde {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04245.WGS.Tbm C3L-04245 AML WGS tumor_bone_marrow CPT0259920002 CPT0259920002.WholeGenome.RP-1303.bam 64636149051 BAM aligned CPTAC3 db778e02-7829-4852-b2f2-79f9741c7b61 85c1bca2b295547dfed7b7fb127606a5 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.WGS.Tbm.hg38 C3L-04245 AML WGS tumor_bone_marrow CPT0259920002 40689824-ea16-45ed-a761-7d19aa08676d_wgs_gdc_realn.bam 94638731543 BAM harmonized CPTAC3 419cf2fb-18cd-4a3e-90b5-2dd8ef7ac714 4e2d5fbe6a2ac94037ad3867d0f6ebe4 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.WXS.Nbc C3L-04245 AML WXS buccal_normal CPT0259910003 CPT0259910003.WholeExome.RP-1303.bam 23427190623 BAM aligned CPTAC3 fe3e36d3-4adf-45bd-867c-833e3bf7fc97 3ae93f8090d04e2eb9278bfa59dbcbaf {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04245.WXS.Nbc.hg38 C3L-04245 AML WXS buccal_normal CPT0259910003 8899c961-0df9-45dd-ab06-13a0365ac9cc_wxs_gdc_realn.bam 32590349162 BAM harmonized CPTAC3 f8eb0ba7-5fe1-4f29-9611-b92247e40c4d 1d6d5df3ec190439543f7268a8d919d1 {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04245.WXS.Tbm C3L-04245 AML WXS tumor_bone_marrow CPT0259920002 CPT0259920002.WholeExome.RP-1303.bam 29005105500 BAM aligned CPTAC3 bfff7243-122b-4810-8c56-4d5662d3073b cae369d322e8d67b86f938335074f8e9 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04245.WXS.Tbm.hg38 C3L-04245 AML WXS tumor_bone_marrow CPT0259920002 40689824-ea16-45ed-a761-7d19aa08676d_wxs_gdc_realn.bam 40743093394 BAM harmonized CPTAC3 c417e8e9-ff83-4ed2-a4ca-558e2be1d51d 9519158b47b23465abb64e8c4b79e641 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.MethArray.Green.Tbm C3L-04250 AML Methylation_Array tumor_bone_marrow CPT0260060002 203561450006_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 15d612b3-641e-44af-adbe-24ca84c5b1a1 eee5fbcb1b6dbbc1c5d4d9d04c8de5e4 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.MethArray.Red.Tbm C3L-04250 AML Methylation_Array tumor_bone_marrow CPT0260060002 203561450006_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 2f7a1135-69ea-4a6c-8b56-8e95157a6f36 8c1f274a5686d3469d0c676ec8679b5c {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.miRNA-Seq.S47_L003_R1.Tbm C3L-04250 AML miRNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGAAG_S47_L003_R1_001.unaln.bam 172034425 BAM S47_L003_R1 unaligned CPTAC3 f33568f8-e132-498b-8877-706cf357a015 0698748b709467779ccf78fddb23dcbf {"aliquot_tag": "ALQ_ac70c3f0", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.miRNA-Seq.Tbm.hg38 C3L-04250 AML miRNA-Seq tumor_bone_marrow CPT0260070002 13320cc8-fd6f-4c9b-b6e4-83d04a93bddf_mirnaseq_gdc_realn.bam 198259229 BAM harmonized CPTAC3 27236254-102f-449b-9111-d5c1315d2308 e2471aa714aa39826c9c5e39f19a6960 {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.RNA-Seq.chimeric.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.chimeric.gdc_realn.bam 29917306 BAM chimeric harmonized CPTAC3 997c5ba1-7e7d-4737-9416-20be5cb5be8f 8369e8663871d534b0b292e7ed75998b {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.RNA-Seq.genomic.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.genomic.gdc_realn.bam 7480507952 BAM genomic harmonized CPTAC3 00de3a43-f673-45df-864d-a80180055802 4774e2f4840ca1cfbf02c5c90d34e695 {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.RNA-Seq.S22_L006_R1.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R1_001.fastq.gz 3689705206 FASTQ S22_L006_R1 unaligned CPTAC3 ddaa1a34-5387-44c9-9039-aaa071dc213d 81f63fcec148f8eaf0c8b68b4b238dc9 {"aliquot_tag": "ALQ_ac70c3f0", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.RNA-Seq.S22_L006_R2.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R2_001.fastq.gz 3986920316 FASTQ S22_L006_R2 unaligned CPTAC3 b0efb625-e897-4171-9c3d-19fbcc95e68d 14a299a8ec54a6ccc7ef11071ca2d89e {"aliquot_tag": "ALQ_ac70c3f0", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.RNA-Seq.transcriptome.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.transcriptome.gdc_realn.bam 7907486077 BAM transcriptome harmonized CPTAC3 6a2968c6-8ac9-4ca4-a19d-e1e6e01868d1 35def27efb3812ddb1d3b7044fafa7ea {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.WGS.Nbc C3L-04250 AML WGS buccal_normal CPT0260050003 CPT0260050003.WholeGenome.RP-1303.bam 72419323247 BAM aligned CPTAC3 93daa485-327f-477a-b2b8-5bcc8f7ea031 9c9c6e61f745263925dea1279a71fb86 {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04250.WGS.Nbc.hg38 C3L-04250 AML WGS buccal_normal CPT0260050003 0a9cd9ca-4e79-432a-b867-657633a54a05_wgs_gdc_realn.bam 104723073342 BAM harmonized CPTAC3 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 b41a9c69074b54e4ef05fea6f886d5c9 {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04250.WGS.Tbm C3L-04250 AML WGS tumor_bone_marrow CPT0260060002 CPT0260060002.WholeGenome.RP-1303.bam 64368595881 BAM aligned CPTAC3 cad468d2-0566-4b25-977c-8ad12f625d4b d671d67dec2d6a47593bd4fee6e93722 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.WGS.Tbm.hg38 C3L-04250 AML WGS tumor_bone_marrow CPT0260060002 a1f75b6d-197c-4dd6-9bc1-51210d45b7e6_wgs_gdc_realn.bam 95862795691 BAM harmonized CPTAC3 539b6614-4424-4a68-8462-e3ab2867246e c4491d6e56899cfa40bc425880d88551 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.WXS.Nbc C3L-04250 AML WXS buccal_normal CPT0260050003 CPT0260050003.WholeExome.RP-1303.bam 25272370019 BAM aligned CPTAC3 f4f57127-a0aa-45e9-8078-377a412aee83 2429e3ca8ddd4f527248a4de1f649c0b {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04250.WXS.Nbc.hg38 C3L-04250 AML WXS buccal_normal CPT0260050003 0a9cd9ca-4e79-432a-b867-657633a54a05_wxs_gdc_realn.bam 35070999601 BAM harmonized CPTAC3 4fd2af8b-5f99-4023-b9d8-4f33a604ecc1 f8ca68e17429fdd82cc63226c11e8a7f {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04250.WXS.Tbm C3L-04250 AML WXS tumor_bone_marrow CPT0260060002 CPT0260060002.WholeExome.RP-1303.bam 25253489540 BAM aligned CPTAC3 7d1ea737-e5c7-4ae9-9f40-8ed794648f01 c477319179685e68005907623bd79ed2 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04250.WXS.Tbm.hg38 C3L-04250 AML WXS tumor_bone_marrow CPT0260060002 a1f75b6d-197c-4dd6-9bc1-51210d45b7e6_wxs_gdc_realn.bam 34787269710 BAM harmonized CPTAC3 e8bf2908-cee5-45e5-8f8c-9c8702937d29 5f3de099c160d5a5132c9b0dd5b95e90 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.MethArray.Green.Tbm C3L-04263 AML Methylation_Array tumor_bone_marrow CPT0302480002 205555380155_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a4ac7b0a-1a05-4f04-bd52-70a7fdb03336 63016a8cfc7a584cb43dce90a8a68cff {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.MethArray.Red.Tbm C3L-04263 AML Methylation_Array tumor_bone_marrow CPT0302480002 205555380155_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 c2eb8ae6-b2ab-4c8b-bcbc-306f3ec72f6c b6b48a91f549573ac0ecfb03ad85852d {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.miRNA-Seq.S3_L001_R1.Tbm C3L-04263 AML miRNA-Seq tumor_bone_marrow CPT0302490002 210702_UNC32-K00270_0289_AHKJ22BBXY_AGTCAA_S3_L001_R1_001.unaln.bam 373583556 BAM S3_L001_R1 unaligned CPTAC3 8b0e3b26-b65f-4ee1-a18b-62890464eb00 22944e03df6b64585bc1de862c7fed55 {"aliquot_tag": "ALQ_ce5a336a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.miRNA-Seq.Tbm.hg38 C3L-04263 AML miRNA-Seq tumor_bone_marrow CPT0302490002 0f266214-ee2e-4331-bf4d-27eec0fcf923_mirnaseq_gdc_realn.bam 398824637 BAM harmonized CPTAC3 5052b32a-9208-43f1-af27-a1d6ecb1183d bbc6f3115220826e12a999f089129727 {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.RNA-Seq.chimeric.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.chimeric.gdc_realn.bam 153756226 BAM chimeric harmonized CPTAC3 6266f05d-cf44-41f7-b008-7dfe97e4e2d8 faaecb83b42f7710a54ee138af2b3b39 {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.RNA-Seq.genomic.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.genomic.gdc_realn.bam 7384893748 BAM genomic harmonized CPTAC3 205098c5-5e9d-424e-8f41-007bd0d9013b 82fd79b682a67d205331cb97bff905e8 {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.RNA-Seq.S18_L005_R1.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R1_001.fastq.gz 3811517383 FASTQ S18_L005_R1 unaligned CPTAC3 50d95169-c9e1-4ace-b490-77bb93633130 9fc5c7975f3d820259954a5feecf3a7c {"aliquot_tag": "ALQ_ce5a336a", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.RNA-Seq.S18_L005_R2.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R2_001.fastq.gz 4043219750 FASTQ S18_L005_R2 unaligned CPTAC3 e5dbbe15-28a7-4d3b-968c-08bc5b42d514 0af88ae5fafcda25e9df09571fc24e56 {"aliquot_tag": "ALQ_ce5a336a", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.RNA-Seq.transcriptome.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.transcriptome.gdc_realn.bam 9076705787 BAM transcriptome harmonized CPTAC3 5087e4e6-ca6f-4c33-8a3e-165a3d46f61a 6d86b008e7616ee724a1a2f9d00bd18b {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.WGS.Nbc C3L-04263 AML WGS buccal_normal CPT0302580001 CPT0302580001.WholeGenome.RP-2158.bam 44190726818 BAM aligned CPTAC3 79ca61b8-8714-4d6d-82d5-48b40189664c 0c0f15aefc4ffdcffdaacf31b70ebd8f {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04263.WGS.Nbc.hg38 C3L-04263 AML WGS buccal_normal CPT0302580001 74b5645c-6c73-4d3f-b50a-22231bbbb212_wgs_gdc_realn.bam 128323112228 BAM harmonized CPTAC3 142d091a-aba1-4173-8c45-567d7ce4ee7f d8ccb0feb9c3be772d3cb450a0588f70 {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04263.WGS.Tbm C3L-04263 AML WGS tumor_bone_marrow CPT0302480002 CPT0302480002.WholeGenome.RP-2158.bam 52129382369 BAM aligned CPTAC3 b1a92ab2-4108-42bf-8fe7-65cb7142179f 9a3a1b83edec53a408ad3ce87ec3b1ab {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.WGS.Tbm.hg38 C3L-04263 AML WGS tumor_bone_marrow CPT0302480002 27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wgs_gdc_realn.bam 153021383594 BAM harmonized CPTAC3 fdae0859-8401-4b76-8d57-bb6607a778c8 f51c1158d21881dea927a42ea664813e {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.WXS.Nbc C3L-04263 AML WXS buccal_normal CPT0302580001 CPT0302580001.WholeExome.RP-1303.bam 22994863044 BAM aligned CPTAC3 835126de-ec66-4001-9667-d72ca715b19d cc0e08520b5696fac86d3efdadb2ce44 {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04263.WXS.Nbc.hg38 C3L-04263 AML WXS buccal_normal CPT0302580001 74b5645c-6c73-4d3f-b50a-22231bbbb212_wxs_gdc_realn.bam 32206402604 BAM harmonized CPTAC3 812bb6f6-a281-4876-b300-5353cea468aa f98151bd25a0c5b3b7fd8e143b497138 {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04263.WXS.Tbm C3L-04263 AML WXS tumor_bone_marrow CPT0302480002 CPT0302480002.WholeExome.RP-1303.bam 27622262879 BAM aligned CPTAC3 605dac6b-49b9-4cf2-b5ee-e4abcb66f773 51541505daacbc8ba2c3136f0a3e26b6 {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04263.WXS.Tbm.hg38 C3L-04263 AML WXS tumor_bone_marrow CPT0302480002 27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wxs_gdc_realn.bam 39100014434 BAM harmonized CPTAC3 9ef14de8-459f-4868-9ebc-f369eeedc6ff 63aa024fbcd2dfbca8761420edeae58b {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.MethArray.Green.Tbm C3L-04265 AML Methylation_Array tumor_bone_marrow CPT0230980002 203561450102_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b4ce4486-20c6-4d80-a1c0-c786ea7b2bcc af6bbae2306035b75bdd94030f06bda8 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.MethArray.Red.Tbm C3L-04265 AML Methylation_Array tumor_bone_marrow CPT0230980002 203561450102_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 c92414fe-493f-457d-82b2-fd95e0cecdee 9ced579a9e780ced89144b720d5dc4cd {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.miRNA-Seq.S37_L002_R1.Tbm C3L-04265 AML miRNA-Seq tumor_bone_marrow CPT0231000002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGGAAT_S37_L002_R1_001.unaln.bam 269073776 BAM S37_L002_R1 unaligned CPTAC3 b9cc71f0-f4ff-45e5-822a-d9ab70266015 fbd1e1375e8f03899ead4a6c104cb1df {"aliquot_tag": "ALQ_f0c71a30", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.miRNA-Seq.Tbm.hg38 C3L-04265 AML miRNA-Seq tumor_bone_marrow CPT0231000002 d8c97a7b-61ed-4118-bde8-edbeaaf898f4_mirnaseq_gdc_realn.bam 302941218 BAM harmonized CPTAC3 d6763eaa-d1c8-421d-b3ad-d913c339a556 f8ade8a88725b1329d836633ca0ff655 {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.RNA-Seq.chimeric.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.chimeric.gdc_realn.bam 36309269 BAM chimeric harmonized CPTAC3 a839acad-3f7e-499d-b15b-28fc528eee19 73fb7d280d6949e02d328f5604f75a3a {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.RNA-Seq.genomic.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.genomic.gdc_realn.bam 8837126874 BAM genomic harmonized CPTAC3 87bd2380-b56e-4661-8407-32aaed05effc 9f4e7383594a4024aeeb4cf81f646a9c {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.RNA-Seq.S21_L006_R1.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R1_001.fastq.gz 4310509333 FASTQ S21_L006_R1 unaligned CPTAC3 53af00b1-31cd-4f05-9545-fd6eefaee541 4ae1fff5161cbc220f88e4614d02cb8c {"aliquot_tag": "ALQ_f0c71a30", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.RNA-Seq.S21_L006_R2.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R2_001.fastq.gz 4843139994 FASTQ S21_L006_R2 unaligned CPTAC3 ab360685-deb0-47d2-8ae9-858cd090f7f3 661249850d28af6ab200215296f9c325 {"aliquot_tag": "ALQ_f0c71a30", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.RNA-Seq.transcriptome.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.transcriptome.gdc_realn.bam 9992097480 BAM transcriptome harmonized CPTAC3 8c246866-dd21-4d67-822e-7df7a39710ed f07b19fc8c41b01b8e774d45a4519b5a {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.WGS.Nbc C3L-04265 AML WGS buccal_normal CPT0231080001 CPT0231080001.WholeGenome.RP-1303.bam 79314045664 BAM aligned CPTAC3 42f29cdd-a55c-4a70-a7cb-6424fd59ae0b 228abc28784d41dbf662f7b465749bf3 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04265.WGS.Nbc.hg38 C3L-04265 AML WGS buccal_normal CPT0231080001 f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wgs_gdc_realn.bam 114103636308 BAM harmonized CPTAC3 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 264f8322142dc0f9e00e23f698a7d913 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04265.WGS.Tbm C3L-04265 AML WGS tumor_bone_marrow CPT0230980002 CPT0230980002.WholeGenome.RP-1303.bam 68601861144 BAM aligned CPTAC3 699161d3-6aaa-4e16-8b1b-4614d836cb91 ea8d0b6c05dee40feecccb8b34e29c89 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.WGS.Tbm.hg38 C3L-04265 AML WGS tumor_bone_marrow CPT0230980002 3ea9c4aa-eba1-4958-a2c1-04867a968f63_wgs_gdc_realn.bam 100425222211 BAM harmonized CPTAC3 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 3e45e3ae5aebfa0ce9b000243ff82522 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.WXS.Nbc C3L-04265 AML WXS buccal_normal CPT0231080001 CPT0231080001.WholeExome.RP-1303.bam 33903908026 BAM aligned CPTAC3 c56e9dae-93c1-4367-b3a6-81e7028f4eca 8033d0d7e00e98b55d0b153a9fe84497 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04265.WXS.Nbc.hg38 C3L-04265 AML WXS buccal_normal CPT0231080001 f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wxs_gdc_realn.bam 46731678277 BAM harmonized CPTAC3 6d54295f-abfd-4903-b7da-a345847aba8c 32c70ab4f5ff86ad444d5f9487155968 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04265.WXS.Tbm C3L-04265 AML WXS tumor_bone_marrow CPT0230980002 CPT0230980002.WholeExome.RP-1303.bam 21431856866 BAM aligned CPTAC3 e16d072d-6bdd-4c3e-a81e-f3d1dac38e17 3644fc2f12d0047ad9ac91a07ea5e65e {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04265.WXS.Tbm.hg38 C3L-04265 AML WXS tumor_bone_marrow CPT0230980002 3ea9c4aa-eba1-4958-a2c1-04867a968f63_wxs_gdc_realn.bam 29828921940 BAM harmonized CPTAC3 80c95db4-ec3f-4be0-b4ae-217eeee992c5 ee0bbe4edc54b2d4cbf14ddfd2e1aca2 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04269.MethArray.Green.Tpb C3L-04269 AML Methylation_Array tumor_peripheral_blood CPT0410160002 205987780101_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 55b6c9a6-016c-4532-8d80-a7981d5f5dd6 41f2993ea6823e6ac05c30c9d2f0a6a2 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.MethArray.Red.Tpb C3L-04269 AML Methylation_Array tumor_peripheral_blood CPT0410160002 205987780101_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 caad17c1-9a7b-4429-960c-599c4897de9d 52e1a8f3a7cd9b5154ce9fda974fb207 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.miRNA-Seq.S8_L003_R1.Tpb C3L-04269 AML miRNA-Seq tumor_peripheral_blood CPT0410170002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L003_R1_001.unaln.bam 283806388 BAM S8_L003_R1 unaligned CPTAC3 084b6930-ac45-47ed-92c6-cbb9d86235d8 c72df745a4db24bba8f5c8c90872fafe {"aliquot_tag": "ALQ_1ef360c6", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.miRNA-Seq.Tpb.hg38 C3L-04269 AML miRNA-Seq tumor_peripheral_blood CPT0410170002 fce961e4-2acc-42b4-8346-b9bde2d6919a_mirnaseq_gdc_realn.bam 314868999 BAM harmonized CPTAC3 8d4e8a1b-e79c-4e73-b824-f3b39eac6929 f7ecc4a8bfb7cb193937723bbcc3c20e {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.RNA-Seq.chimeric.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.chimeric.gdc_realn.bam 652421558 BAM chimeric harmonized CPTAC3 05a79073-f918-4edd-ad78-8e60f24015ca 54f7847a3b81be65d9827a857865c14e {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.RNA-Seq.genomic.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.genomic.gdc_realn.bam 8067191807 BAM genomic harmonized CPTAC3 c208f3c1-07a2-4c33-bef3-1d785b254c29 cfad4033e0c32e4d3c1c4e6e021d6acf {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.RNA-Seq.S32_L008_R1.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R1_001.fastq.gz 3791093449 FASTQ S32_L008_R1 unaligned CPTAC3 d548139e-dcbb-4064-a6e5-47466195bc6b 73646eed446b369344bf6f9f6080a799 {"aliquot_tag": "ALQ_1ef360c6", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.RNA-Seq.S32_L008_R2.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R2_001.fastq.gz 4294650540 FASTQ S32_L008_R2 unaligned CPTAC3 9405337a-8f55-4d24-8926-d7fcb09c492b eb6c33776603b1a1fe8b5128e83b9596 {"aliquot_tag": "ALQ_1ef360c6", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.RNA-Seq.transcriptome.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.transcriptome.gdc_realn.bam 8320905355 BAM transcriptome harmonized CPTAC3 65c880d2-e0e0-46f0-a212-8b118bed066e 4e330b0c451cd4f8306f612ab6729dc5 {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.WGS.Tpb C3L-04269 AML WGS tumor_peripheral_blood CPT0410160002 CPT0410160002.WholeGenome.RP-2158.bam 52289007257 BAM aligned CPTAC3 c206d65e-f256-471f-a5ec-a49f76d4bd5f 2c22e58d81445b1cc22de6df7d40e35c {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.WGS.Tpb.hg38 C3L-04269 AML WGS tumor_peripheral_blood CPT0410160002 5429cc08-8a1f-4a73-906e-f4946bddf5ac_wgs_gdc_realn.bam 153654322913 BAM harmonized CPTAC3 91ab2d1f-bde2-467f-946e-046e2beaf400 d933e50ad1b9652b8d5fd053b2437b1f {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.WXS.Nbc C3L-04269 AML WXS buccal_normal CPT0410130001 CPT0410130001.WholeExome.RP-1303.bam 23690432559 BAM aligned CPTAC3 477a261a-0032-4370-980e-9a7f7521d2b9 9fb5f25f3b194bfea0d52f0a5a4ace23 {"aliquot_tag": "ALQ_727a97bc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04269.WXS.Nbc.hg38 C3L-04269 AML WXS buccal_normal CPT0410130001 4f69dcfa-a3db-4857-953a-5f94514efa44_wxs_gdc_realn.bam 32385634097 BAM harmonized CPTAC3 211bca65-45bb-4347-8146-b83f2c4e2222 6e7cd7a7df45e8a4e63b7020f4973a2e {"aliquot_tag": "ALQ_727a97bc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04269.WXS.Tpb C3L-04269 AML WXS tumor_peripheral_blood CPT0410160002 CPT0410160002.WholeExome.RP-1303.bam 26085113690 BAM aligned CPTAC3 3520a5c1-99c5-4ee0-9daf-4105e9f6b91a 50676822f5ec75eb4f1e7bb1b41423d4 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04269.WXS.Tpb.hg38 C3L-04269 AML WXS tumor_peripheral_blood CPT0410160002 5429cc08-8a1f-4a73-906e-f4946bddf5ac_wxs_gdc_realn.bam 36054933398 BAM harmonized CPTAC3 d62e5a8b-3ed8-4ce2-a033-ab59310ca232 5f40d7d21b1ac76e205c7b243cf99228 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04270.MethArray.Green.Tbm C3L-04270 AML Methylation_Array tumor_bone_marrow CPT0280070002 205555390157_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 c79bb87d-10cd-4263-bcbe-c3dd46912b9c 51179644a08835eb64d770e57824ff5d {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.MethArray.Red.Tbm C3L-04270 AML Methylation_Array tumor_bone_marrow CPT0280070002 205555390157_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 2131c4cf-9bb7-4e50-9ff4-c55a3d20a584 b12bf643109a82ec24f0423628ae23e2 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.miRNA-Seq.S19_L001_R1.Tbm C3L-04270 AML miRNA-Seq tumor_bone_marrow CPT0280080001 210702_UNC32-K00270_0289_AHKJ22BBXY_TAGCTT_S19_L001_R1_001.unaln.bam 342712818 BAM S19_L001_R1 unaligned CPTAC3 be69c497-c480-4ffe-ae3b-91417ef83ded ca8bef515c42ddeb266beae32f325a4d {"aliquot_tag": "ALQ_a2a317a9", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.miRNA-Seq.Tbm.hg38 C3L-04270 AML miRNA-Seq tumor_bone_marrow CPT0280080001 320b7272-d132-414e-a9ed-6ffdb0135524_mirnaseq_gdc_realn.bam 381028035 BAM harmonized CPTAC3 ccef8668-ddc3-4e65-8090-596860f8b657 97ad581265cf289a51628a79836ed2e2 {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.RNA-Seq.chimeric.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.chimeric.gdc_realn.bam 122777876 BAM chimeric harmonized CPTAC3 90110308-309a-407b-ae9e-a3a29d495fba cdff05fd21a21cb9deb7e2921816043b {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.RNA-Seq.genomic.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.genomic.gdc_realn.bam 8015174223 BAM genomic harmonized CPTAC3 ddb8174d-4adf-4dbd-8faa-d2fce82e0a68 162e82396a9cbcc55266541f4b0ee5ad {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.RNA-Seq.S22_L006_R1.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R1_001.fastq.gz 4138037151 FASTQ S22_L006_R1 unaligned CPTAC3 8a3129ee-c1c8-4a42-a263-74e98cb4a75b a648b76c0cc62ea0807da93a039bfc14 {"aliquot_tag": "ALQ_a2a317a9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.RNA-Seq.S22_L006_R2.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R2_001.fastq.gz 4280223869 FASTQ S22_L006_R2 unaligned CPTAC3 3475f320-39a9-4913-a496-0bf21360a545 e76d769efb4714aa1504753ee8422775 {"aliquot_tag": "ALQ_a2a317a9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.RNA-Seq.transcriptome.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.transcriptome.gdc_realn.bam 9353933846 BAM transcriptome harmonized CPTAC3 d0ffaec8-ac93-4485-8dd4-eefcabcd7dff dd6f83f3476ac7a9f92c52f65fda8a71 {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.WGS.Nbc C3L-04270 AML WGS buccal_normal CPT0280050001 CPT0280050001.WholeGenome.RP-2158.bam 53997676579 BAM aligned CPTAC3 584533ee-c9ac-4508-ba42-e3641671903d 416579009f84791da067f8a73eeec2dc {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04270.WGS.Nbc.hg38 C3L-04270 AML WGS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wgs_gdc_realn.bam 169120568393 BAM harmonized CPTAC3 75406c0c-b54e-40da-8d71-7aebffc242d0 856f71dd38cdbddddca1ba4767db4652 {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04270.WGS.Tbm C3L-04270 AML WGS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeGenome.RP-2158.bam 43565696594 BAM aligned CPTAC3 c15b0c27-aa8d-4080-8a60-6c8dd5332a22 586e1d53f4c906d14b082abfc5d556da {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.WGS.Tbm.hg38 C3L-04270 AML WGS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wgs_gdc_realn.bam 128554904097 BAM harmonized CPTAC3 a382bf00-ff44-4937-98ed-fc56b0596db2 4634f79d245e41da2592b9a69b141df2 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.WXS.Nbc C3L-04270 AML WXS buccal_normal CPT0280050001 CPT0280050001.WholeExome.RP-1303.bam 24254314387 BAM aligned CPTAC3 9d05ed59-c2bc-4a16-98e9-3b4dcf49eaef 900cd72e9f0e19c8d3441f1974232c83 {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04270.WXS.Nbc.hg38 C3L-04270 AML WXS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wxs_gdc_realn.bam 33432029614 BAM harmonized CPTAC3 b6bbc306-2ab1-45d3-9d04-6aca54c65c17 50a2da4765827ed63c8c411bf38b2be0 {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04270.WXS.Tbm C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeExome.RP-1303.bam 21736140676 BAM aligned CPTAC3 778d053c-1d97-4b94-82a5-14abc9ac93e6 8fc5e43233c4fc7240969dc4e576da84 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04270.WXS.Tbm.hg38 C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wxs_gdc_realn.bam 29926952849 BAM harmonized CPTAC3 9373160f-3fdc-4920-8d50-c2ff94a07743 c247b13c7d53eedb4da392bed9fedb01 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04336.MethArray.Green.A C3L-04336 LSCC Methylation_Array tissue_normal CPT0256900006 204372030139_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e5a30652-4ae5-4f37-b136-5861117ba429 f3dc687d652f7979064e2a11dbe626ce {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.MethArray.Green.T C3L-04336 LSCC Methylation_Array tumor CPT0256850006 204372030087_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 33b632d9-99ed-4e15-8709-9b7c0503cc47 7218dc45e4cbfefcb82c755e1e95a880 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor"} -C3L-04336.MethArray.Red.A C3L-04336 LSCC Methylation_Array tissue_normal CPT0256900006 204372030139_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 83d66753-5de6-49f6-be0f-917e0870fd75 342c9a485ffd7ea9f15c6b37d0adf736 {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.MethArray.Red.T C3L-04336 LSCC Methylation_Array tumor CPT0256850006 204372030087_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 3b55f254-3278-44a7-8be9-bcc10aff58a2 f5f37536327457a107ba248e0ce73cd7 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor"} -C3L-04336.miRNA-Seq.A.hg38 C3L-04336 LSCC miRNA-Seq tissue_normal CPT0256900009 7763789d-e974-4cec-890f-c4a8344986e2_mirnaseq_gdc_realn.bam 269068843 BAM harmonized CPTAC3 d4475d97-3a18-426a-ac3d-5caa6d5581aa 274802b4d66a7b3f70e67a0438d316b5 {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.miRNA-Seq.S2_L007_R1.A C3L-04336 LSCC miRNA-Seq tissue_normal CPT0256900009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACTTGA_S2_L007_R1_001.unaln.bam 240489947 BAM S2_L007_R1 unaligned CPTAC3 de442dd3-f415-4416-96d0-2b71b960e325 85b540d208975ee5fd2e6cf4604ff4be {"aliquot_tag": "ALQ_43d2a579", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.miRNA-Seq.S8_L006_R1.T C3L-04336 LSCC miRNA-Seq tumor CPT0256850009 200224_UNC31-K00269_0267_AHC722BBXY_ACTTGA_S8_L006_R1_001.unaln.bam 247377140 BAM S8_L006_R1 unaligned CPTAC3 db3c9223-1cf8-48c4-a112-73b4398856bb 4c87083a0d547701871277bdf70c957e {"aliquot_tag": "ALQ_406ef9ac", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04336.miRNA-Seq.T.hg38 C3L-04336 LSCC miRNA-Seq tumor CPT0256850009 0e194943-07db-4824-b62f-1d480f2c17ac_mirnaseq_gdc_realn.bam 278844565 BAM harmonized CPTAC3 2f722b20-f229-4687-a80a-24013791a7de 675b92a4f569fdca61c132e0acae5222 {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor"} -C3L-04336.RNA-Seq.chimeric.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.chimeric.gdc_realn.bam 78753684 BAM chimeric harmonized CPTAC3 70cf2f19-6d78-46b5-93a5-7e4f0ffde867 838f2371d00ae19fe5bb76f8bbaf3700 {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.RNA-Seq.chimeric.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.chimeric.gdc_realn.bam 57525179 BAM chimeric harmonized CPTAC3 3530bc7b-55c9-4e98-9204-32cef155f83e f4c1acf97f48f0ff8f85170441a7752b {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor"} -C3L-04336.RNA-Seq.genomic.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.genomic.gdc_realn.bam 10035592744 BAM genomic harmonized CPTAC3 95235af6-5626-4af9-b8bb-9188c7513bdb e591874883e230127798b33579816270 {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.RNA-Seq.genomic.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.genomic.gdc_realn.bam 9960373804 BAM genomic harmonized CPTAC3 37b617c5-8b05-4d4a-b086-b285b157c848 754a5881a9b30e2c06a5a7a37493fa9d {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor"} -C3L-04336.RNA-Seq.S24_L006_R1.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R1_001.fastq.gz 4978146204 FASTQ S24_L006_R1 unaligned CPTAC3 1956c0ac-22a8-4eaf-b902-60f761cffb68 23e35a17c316aafcd001762a4dfbfa1c {"aliquot_tag": "ALQ_406ef9ac", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04336.RNA-Seq.S24_L006_R2.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R2_001.fastq.gz 5212057900 FASTQ S24_L006_R2 unaligned CPTAC3 a9ca1e0c-0d79-4d8a-bc85-fc1efec794d2 6cc1d452194a86574a18815089a75a5a {"aliquot_tag": "ALQ_406ef9ac", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04336.RNA-Seq.S7_L002_R1.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R1_001.fastq.gz 4978141232 FASTQ S7_L002_R1 unaligned CPTAC3 1d5e8d44-c758-4c01-856f-923ce90088d9 70fa0b56f324ee773a988e32817bfa96 {"aliquot_tag": "ALQ_43d2a579", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.RNA-Seq.S7_L002_R2.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R2_001.fastq.gz 5495426971 FASTQ S7_L002_R2 unaligned CPTAC3 bde959a3-48f7-439a-b1ea-2b56936ee3d2 6ca4f07b564944132b9ba88db5f9d5d3 {"aliquot_tag": "ALQ_43d2a579", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.RNA-Seq.transcriptome.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.transcriptome.gdc_realn.bam 11961274851 BAM transcriptome harmonized CPTAC3 cbd93b64-cf8a-4b4d-9e43-27fb019888ba b1b895371306bc31ac83c76451ab198f {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.RNA-Seq.transcriptome.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.transcriptome.gdc_realn.bam 13120410788 BAM transcriptome harmonized CPTAC3 feaa0b0c-f292-4bc4-88b0-a6698013c8ad ac36351d53a56d124c663e9d1e22e89c {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor"} -C3L-04336.WGS.N C3L-04336 LSCC WGS blood_normal CPT0257000002 CPT0257000002.WholeGenome.RP-2158.bam 28382645326 BAM aligned CPTAC3 2ecd0917-d886-4c27-bdf6-120e30b0547a 1779317918fef5d7de564f3e6ac239a1 {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04336.WGS.N.hg38 C3L-04336 LSCC WGS blood_normal CPT0257000002 4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wgs_gdc_realn.bam 84241551453 BAM harmonized CPTAC3 aa673546-1c0d-4508-9ab6-dad3e4b748ae 516cf87116a439381c4bebdb45fbb1ae {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04336.WGS.T C3L-04336 LSCC WGS tumor CPT0256850006 CPT0256850006.WholeGenome.RP-2158.bam 23904262100 BAM aligned CPTAC3 5c700df8-9626-4edc-91bf-2d4bb64e7e01 a7bbfed150c4fe35569c271aed2452a3 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor"} -C3L-04336.WGS.T.hg38 C3L-04336 LSCC WGS tumor CPT0256850006 fe1754f9-bcfe-4701-99e2-50d94e7e8c5c_wgs_gdc_realn.bam 69650090525 BAM harmonized CPTAC3 43875a6f-1286-408a-b54d-150b608901ac cc69219088f916e17128821f2035df75 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor"} -C3L-04336.WXS.A C3L-04336 LSCC WXS tissue_normal CPT0256900006 CPT0256900006.WholeExome.RP-1303.bam 23424790332 BAM aligned CPTAC3 27ef8125-eb08-49ba-8fa4-29506994b11c 1ee228102dd5a40e0a3483dc786aff89 {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.WXS.A.hg38 C3L-04336 LSCC WXS tissue_normal CPT0256900006 327bcd00-054a-47a3-9812-8d6112931bd3_wxs_gdc_realn.bam 33059293041 BAM harmonized CPTAC3 646e6587-213d-4e0c-8b47-0f04891b4c60 02ba325b842bb4e3c7d087edd6e7137d {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04336.WXS.N C3L-04336 LSCC WXS blood_normal CPT0257000002 CPT0257000002.WholeExome.RP-1303.bam 40854463163 BAM aligned CPTAC3 32bfc1cf-0d5d-46cf-8d68-6c3661a27668 02963ee5bd27c35a19bf0ebd2c862961 {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04336.WXS.N.hg38 C3L-04336 LSCC WXS blood_normal CPT0257000002 4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wxs_gdc_realn.bam 54887897348 BAM harmonized CPTAC3 1a24671b-f4be-4246-a1f1-019bd0be9375 8a9a4e38f2013ef914a96273bb143abc {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal"} -C3L-04336.WXS.T C3L-04336 LSCC WXS tumor CPT0256850006 CPT0256850006.WholeExome.RP-1303.bam 18432713807 BAM aligned CPTAC3 e74c96f3-771d-48ad-b57c-7adf3dfd0a3c 0f1750d62bce0c4899895c1d66c8ac53 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor"} -C3L-04336.WXS.T.hg38 C3L-04336 LSCC WXS tumor CPT0256850006 fe1754f9-bcfe-4701-99e2-50d94e7e8c5c_wxs_gdc_realn.bam 25248384029 BAM harmonized CPTAC3 2b354936-5716-47c8-b574-3bdb088524be 0417b5466806a882aa3f3617c9ec47a6 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor"} -C3L-04339.MethArray.Green.T C3L-04339 GBM Methylation_Array tumor CPT0258090006 204372030024_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 06b7bb69-881a-4d8d-9e69-657c155e681c 470a9ce9da03a235c3a2ca1706d7f695 {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor"} -C3L-04339.MethArray.Red.T C3L-04339 GBM Methylation_Array tumor CPT0258090006 204372030024_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 3731cfc1-aeba-4f8d-b51b-acebe911b3cb 92c0ba0cbd2729a623d194e3e7d8c16a {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor"} -C3L-04339.miRNA-Seq.S19_L001_R1.T C3L-04339 GBM miRNA-Seq tumor CPT0258090008 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L001_R1_001.unaln.bam 381401337 BAM S19_L001_R1 unaligned CPTAC3 7ba9728a-8370-4ec2-9202-b4fc621b0e15 2d5ac790dc0407adf0033291cae84f23 {"aliquot_tag": "ALQ_4ef5dd0b", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04339.miRNA-Seq.T.hg38 C3L-04339 GBM miRNA-Seq tumor CPT0258090008 a135d303-2474-48c4-bff0-0f7b8c8021b6_mirnaseq_gdc_realn.bam 427460534 BAM harmonized CPTAC3 d62b8902-1cb3-446d-afbf-293f4c5acbce 5066381eba57ffcb4a86ad777630ad3f {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor"} -C3L-04339.RNA-Seq.chimeric.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.chimeric.gdc_realn.bam 23661139 BAM chimeric harmonized CPTAC3 88dceb91-b202-4f33-b2b7-d9b37241e636 a74276df3be49468dfd2777f91f71e90 {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor"} -C3L-04339.RNA-Seq.genomic.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.genomic.gdc_realn.bam 5987088707 BAM genomic harmonized CPTAC3 6dbbf2ac-c081-4485-aa3d-f09702f1f19f ddfb6fe472c3abd412b264b4027ec6cb {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor"} -C3L-04339.RNA-Seq.S16_L004_R1.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R1_001.fastq.gz 2500941440 FASTQ S16_L004_R1 unaligned CPTAC3 c6a9244a-4ab2-4f78-be63-b74401e4b903 66a2a3ac3cec1d5cf11e3c01f94ec89f {"aliquot_tag": "ALQ_4ef5dd0b", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04339.RNA-Seq.S16_L004_R2.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ S16_L004_R2 unaligned CPTAC3 1ad6b56f-857b-4e87-ba96-77141a60b898 5d6636c43070a2cacdb4285e10f1ed91 {"aliquot_tag": "ALQ_4ef5dd0b", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04339.RNA-Seq.transcriptome.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.transcriptome.gdc_realn.bam 7799753332 BAM transcriptome harmonized CPTAC3 19b1420f-8242-472c-95fb-e6e4db6e6a73 339f8c9e1ea1e036e2b4da1ac35528a0 {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor"} -C3L-04339.WGS.N C3L-04339 GBM WGS blood_normal CPT0258190002 CPT0258190002.WholeGenome.RP-2158.bam 25848841555 BAM aligned CPTAC3 1afa5fa1-59fe-4184-8c5e-e6d57323443d 38ba15e16722fdec5cae606b5533a243 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-04339.WGS.N.hg38 C3L-04339 GBM WGS blood_normal CPT0258190002 33f46088-32c6-48b4-8a6b-2290453f2095_wgs_gdc_realn.bam 76854036007 BAM harmonized CPTAC3 a78992b6-5d44-4e49-ba64-f99c06d9700e 898dc9eba69c7828d56ea0a380681697 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-04339.WGS.T C3L-04339 GBM WGS tumor CPT0258090006 CPT0258090006.WholeGenome.RP-2158.bam 27146278918 BAM aligned CPTAC3 48351d83-cc2f-4826-8731-0830df0aa09c ee2ec8e19fa8e277b6ece8d424b9d350 {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor"} -C3L-04339.WGS.T.hg38 C3L-04339 GBM WGS tumor CPT0258090006 ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wgs_gdc_realn.bam 80406894411 BAM harmonized CPTAC3 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 c8c073518bf0dd19165be93e57213015 {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor"} -C3L-04339.WXS.N C3L-04339 GBM WXS blood_normal CPT0258190002 CPT0258190002.WholeExome.RP-1303.bam 20907651385 BAM aligned CPTAC3 909af21e-8e05-49c8-b296-9dd8a03ebe9f a5598640185818bd449a9199291a3197 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-04339.WXS.N.hg38 C3L-04339 GBM WXS blood_normal CPT0258190002 33f46088-32c6-48b4-8a6b-2290453f2095_wxs_gdc_realn.bam 28408035993 BAM harmonized CPTAC3 210f66ea-881d-49ae-b32c-3d39ddac7941 3c1b5c2cd3e9a08e32e814fea4a26290 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal"} -C3L-04339.WXS.T C3L-04339 GBM WXS tumor CPT0258090006 CPT0258090006.WholeExome.RP-1303.bam 22723005441 BAM aligned CPTAC3 8e3ea70c-2461-4d72-9a04-9e06088513c4 2a9af14ae1d392fba85d3cab7f2c29cb {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor"} -C3L-04339.WXS.T.hg38 C3L-04339 GBM WXS tumor CPT0258090006 ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wxs_gdc_realn.bam 32992537997 BAM harmonized CPTAC3 d105a1df-c44b-46eb-aba8-6bd7b2a87af5 47d3817ccfd4610a39c9bf5cecfa131d {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor"} -C3L-04354.MethArray.Green.A C3L-04354 HNSCC Methylation_Array tissue_normal CPT0243140010 203220070102_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 284f369f-50bf-4ac8-9bfb-dbd7f09d1b30 9da7752264459379f5827322885b17dd {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.MethArray.Green.T C3L-04354 HNSCC Methylation_Array tumor CPT0243090006 203271750047_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2e6836a3-25e3-4f23-aa87-d2e344b21c63 a99a2ee2dd7ccf0e46661411e543d628 {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor"} -C3L-04354.MethArray.Red.A C3L-04354 HNSCC Methylation_Array tissue_normal CPT0243140010 203220070102_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 a86adc96-b0e3-49f4-b0a6-8a6c71db02a3 0ab69e3fd17bfafc920318adb8af4385 {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.MethArray.Red.T C3L-04354 HNSCC Methylation_Array tumor CPT0243090006 203271750047_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 2bfa27e2-b085-4012-ae75-49da541ca4c6 2ef5180935354bbffdacb7d95ce00b2c {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor"} -C3L-04354.miRNA-Seq.A.hg38 C3L-04354 HNSCC miRNA-Seq tissue_normal CPT0243140007 734a8fea-0ec1-4d91-9293-d549a62633c7_mirnaseq_gdc_realn.bam 291587137 BAM harmonized CPTAC3 8b6c72ef-bc17-4023-aec2-eec821936200 e49726dc31266d5820dc7a62e7efbaee {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.miRNA-Seq.S40_L006_R1.A C3L-04354 HNSCC miRNA-Seq tissue_normal CPT0243140007 190228_UNC32-K00270_0151_AHYLY3BBXX_CTCAGA_S40_L006_R1_001.unaln.bam 262121373 BAM S40_L006_R1 unaligned CPTAC3 bbf7f302-acb3-4b83-bb13-3bdfa506db9f 96b79d38c813471929dffebeacde4c3c {"aliquot_tag": "ALQ_232b83ea", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.miRNA-Seq.S43_L004_R1.T C3L-04354 HNSCC miRNA-Seq tumor CPT0243090009 190228_UNC32-K00270_0151_AHYLY3BBXX_TACAGC_S43_L004_R1_001.unaln.bam 288732779 BAM S43_L004_R1 unaligned CPTAC3 822fd66c-7cdc-4ca8-ab36-2e8e750f28f1 d67f99438222ced85b8e81299c818b8f {"aliquot_tag": "ALQ_f75fb9f9", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04354.miRNA-Seq.T.hg38 C3L-04354 HNSCC miRNA-Seq tumor CPT0243090009 cb1bc68f-be92-4527-8b41-a381fddc2317_mirnaseq_gdc_realn.bam 315428393 BAM harmonized CPTAC3 a2a6b69c-e586-499c-8df2-f1c9d5b1b9ac a525b50b409a1c2eaadb416a51e1bf3f {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor"} -C3L-04354.RNA-Seq.chimeric.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.chimeric.gdc_realn.bam 31274068 BAM chimeric harmonized CPTAC3 a82d0a28-1641-4666-85ec-93059ac64ce4 3e1e4152100922fd2aa20269de00f67c {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.RNA-Seq.chimeric.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.chimeric.gdc_realn.bam 250309929 BAM chimeric harmonized CPTAC3 aa693b68-0ae3-4b7d-b704-5d0346b60e80 a493ccce9429db024b27f57f63e689eb {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor"} -C3L-04354.RNA-Seq.genomic.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.genomic.gdc_realn.bam 7988415034 BAM genomic harmonized CPTAC3 ed21d1fd-e034-4188-a834-8f00c23bb12b 9c4ec8741e7099de64c3e1216c503f35 {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.RNA-Seq.genomic.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.genomic.gdc_realn.bam 9068611099 BAM genomic harmonized CPTAC3 a3b0430d-6d17-4ffb-ad75-af605754314d 26ca893764b20a4d8fcec34da6bf3b6a {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor"} -C3L-04354.RNA-Seq.S16_L004_R1.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R1_001.fastq.gz 3584955086 FASTQ S16_L004_R1 unaligned CPTAC3 e239027f-e025-487d-abcc-ff9de8e34f80 60681ed8f40f10e8e3a6f176e05fa40b {"aliquot_tag": "ALQ_232b83ea", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.RNA-Seq.S16_L004_R2.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R2_001.fastq.gz 4145360974 FASTQ S16_L004_R2 unaligned CPTAC3 3268285d-843c-4702-ae5a-80b8964dda0c 4e96b76c7f6398cfa221a6e1c8cfd82b {"aliquot_tag": "ALQ_232b83ea", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.RNA-Seq.S1_L001_R1.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4410111059 FASTQ S1_L001_R1 unaligned CPTAC3 509c74b9-0387-4e6e-9a34-df82a0e21c15 12139510fc810c5dcc0e8d660320dbc7 {"aliquot_tag": "ALQ_f75fb9f9", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04354.RNA-Seq.S1_L001_R2.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4794346110 FASTQ S1_L001_R2 unaligned CPTAC3 2d2bdec4-4dc8-4305-bca9-d20ad509cfbb c907ce05d3f15d44b9871d2946fae84e {"aliquot_tag": "ALQ_f75fb9f9", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04354.RNA-Seq.transcriptome.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.transcriptome.gdc_realn.bam 10682719052 BAM transcriptome harmonized CPTAC3 d1c1847f-b2cc-4a35-ade2-0d3fd90b37b7 908880258f5542a849f27a0517fb6049 {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.RNA-Seq.transcriptome.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.transcriptome.gdc_realn.bam 11087872998 BAM transcriptome harmonized CPTAC3 973485ca-c324-4033-bed0-0d32c528c3d2 f1aa8f8a222bbb7cf40445bac22b12b9 {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor"} -C3L-04354.WGS.N C3L-04354 HNSCC WGS blood_normal CPT0243240002 CPT0243240002.WholeGenome.RP-1303.bam 70599957432 BAM aligned CPTAC3 3507aa10-8711-4961-bcb4-dc51bcf523c9 d8fb4f1513a926ecaf68024e7e31bb16 {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04354.WGS.N.hg38 C3L-04354 HNSCC WGS blood_normal CPT0243240002 18200700-e8f1-4f3e-a1ab-fd3d5fb89aef_wgs_gdc_realn.bam 104372983227 BAM harmonized CPTAC3 245df080-9e1b-4323-a775-2f45d179785d b288426087dc3023526d1e230eca25ea {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04354.WGS.T C3L-04354 HNSCC WGS tumor CPT0243090006 CPT0243090006.WholeGenome.RP-1303.bam 80228877144 BAM aligned CPTAC3 1be7f8e1-988a-4149-a9fb-a95d0fea0b27 bf4cab090bd70aae2ecf1457d701e504 {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor"} -C3L-04354.WGS.T.hg38 C3L-04354 HNSCC WGS tumor CPT0243090006 ff57bec1-fdf3-4efe-aaae-81d5f465ea8d_wgs_gdc_realn.bam 120529725476 BAM harmonized CPTAC3 2288df6f-b933-4ec3-a47d-72802a81523d 4286be616c77b4c72d4dca7ed7b338ad {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor"} -C3L-04354.WXS.A C3L-04354 HNSCC WXS tissue_normal CPT0243140010 CPT0243140010.WholeExome.RP-1303.bam 26917454839 BAM aligned CPTAC3 44642e47-482e-4ff0-864e-f9f1f83272fb 4b891e024d1fe2c515762ed18a81c00d {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.WXS.A.hg38 C3L-04354 HNSCC WXS tissue_normal CPT0243140010 2a8e88a7-eeda-4085-9852-611491dd71f0_wxs_gdc_realn.bam 37657990125 BAM harmonized CPTAC3 95da5f84-be26-420f-96ae-8c2f3022b09f a704637a693bb473aa7fac17f2d5d8e4 {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04354.WXS.N C3L-04354 HNSCC WXS blood_normal CPT0243240002 CPT0243240002.WholeExome.RP-1303.bam 22938774940 BAM aligned CPTAC3 7aa51968-5a8e-4c97-a4e7-9867d568ee10 e88ef4a9407396853f840aaa64699d3f {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04354.WXS.N.hg38 C3L-04354 HNSCC WXS blood_normal CPT0243240002 18200700-e8f1-4f3e-a1ab-fd3d5fb89aef_wxs_gdc_realn.bam 32082794930 BAM harmonized CPTAC3 1a7fe815-6001-4550-b337-5883804884d4 635c0b852d0504edade62db89a0274d8 {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04354.WXS.T C3L-04354 HNSCC WXS tumor CPT0243090006 CPT0243090006.WholeExome.RP-1303.bam 26454600606 BAM aligned CPTAC3 9efe2ca7-5ade-42d4-a8a3-1929f1f976bc 696f22885d18ea374788091d3941d798 {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor"} -C3L-04354.WXS.T.hg38 C3L-04354 HNSCC WXS tumor CPT0243090006 ff57bec1-fdf3-4efe-aaae-81d5f465ea8d_wxs_gdc_realn.bam 35819125417 BAM harmonized CPTAC3 36098590-cd66-4240-83d5-39a28eaa73a3 bd02d5bb500ee19d45cd4c1a8235bead {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor"} -C3L-04359.MethArray.Green.T C3L-04359 GBM Methylation_Array tumor CPT0243280006 204372030022_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 1bb74675-9bdd-4a36-a0d7-561e1e6782f0 5047c4f7120da816a9edd7e9ad3593ee {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor"} -C3L-04359.MethArray.Red.T C3L-04359 GBM Methylation_Array tumor CPT0243280006 204372030022_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 43e71864-4b28-4f3c-badd-e8e4f50058a8 764ab25aecf9a10b560773c8220249a5 {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor"} -C3L-04359.miRNA-Seq.S30_L002_R1.T C3L-04359 GBM miRNA-Seq tumor CPT0243280009 200403_UNC31-K00269_0274_AHCF7GBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 309843615 BAM S30_L002_R1 unaligned CPTAC3 5187c868-9062-449b-a2dc-51a88211022a 88c1f4f1a53f9077ac7405480a88f8f4 {"aliquot_tag": "ALQ_87f73142", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04359.miRNA-Seq.T.hg38 C3L-04359 GBM miRNA-Seq tumor CPT0243280009 69909312-f440-473d-bea5-cb1a6f0da238_mirnaseq_gdc_realn.bam 361913473 BAM harmonized CPTAC3 627019e3-a8ed-43a8-93c3-f84c81f0c47e 560e381590dc5332cef08fef439d68d6 {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor"} -C3L-04359.RNA-Seq.chimeric.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.chimeric.gdc_realn.bam 200485178 BAM chimeric harmonized CPTAC3 04bda66f-0819-487f-a037-5e55c1c43fb4 ff572dc975efd980d7416302599616f0 {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor"} -C3L-04359.RNA-Seq.genomic.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.genomic.gdc_realn.bam 8261686378 BAM genomic harmonized CPTAC3 c819ba61-5163-4e38-b2eb-acb880128812 6ef7d6167d14b480b3fbff6e8f114efe {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor"} -C3L-04359.RNA-Seq.S10_L008_R1.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ S10_L008_R1 unaligned CPTAC3 b42d0852-cae1-4758-a678-bc012f13aea9 a93e8e0b3921e78abcf0445d4a1b8ed2 {"aliquot_tag": "ALQ_87f73142", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04359.RNA-Seq.S10_L008_R2.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ S10_L008_R2 unaligned CPTAC3 88640d20-f2e8-42d8-a9aa-eb03821c31f7 74c62c6dffbfe2515f03bdece6dbe8b6 {"aliquot_tag": "ALQ_87f73142", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04359.RNA-Seq.transcriptome.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.transcriptome.gdc_realn.bam 8170499777 BAM transcriptome harmonized CPTAC3 8968fe56-0606-4c3b-bf62-7dac674d51ce 74e18cad0ca92b1a79eb9cb0eb750d75 {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor"} -C3L-04359.WGS.N C3L-04359 GBM WGS blood_normal CPT0243350002 CPT0243350002.WholeGenome.RP-2158.bam 25332896750 BAM aligned CPTAC3 5b4ed69a-9a13-44a2-b07e-e2ee7b686d46 0c6178488a46048d304b5ebdad803264 {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal"} -C3L-04359.WGS.N.hg38 C3L-04359 GBM WGS blood_normal CPT0243350002 d7706205-c0e2-4a84-a0d3-5496598cbf10_wgs_gdc_realn.bam 73863141089 BAM harmonized CPTAC3 a64412f1-74c9-486b-98a7-9eba8d21f9fb 41f89f7e23e3a576a440b798399b2c61 {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal"} -C3L-04359.WGS.T C3L-04359 GBM WGS tumor CPT0243280006 CPT0243280006.WholeGenome.RP-2158.bam 23903590429 BAM aligned CPTAC3 8ed53d0f-a2e7-4652-bbe9-776bc915a317 617a44eda943cf2649a780e494e6ae5b {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor"} -C3L-04359.WGS.T.hg38 C3L-04359 GBM WGS tumor CPT0243280006 7dbf52e5-6cf7-44bf-b211-2941a5917899_wgs_gdc_realn.bam 70650337535 BAM harmonized CPTAC3 d7d2db0a-f513-4241-9a62-c47f70046392 9296a7e66c1950e35fb1ea83a8ccd26e {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor"} -C3L-04359.WXS.N C3L-04359 GBM WXS blood_normal CPT0243350002 CPT0243350002.WholeExome.RP-1303.bam 32069118972 BAM aligned CPTAC3 10b4ba0a-fec2-41f2-936d-4dffb4bddd33 8893841f2b964d1d9b4373b2c9ec7f96 {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal"} -C3L-04359.WXS.N.hg38 C3L-04359 GBM WXS blood_normal CPT0243350002 d7706205-c0e2-4a84-a0d3-5496598cbf10_wxs_gdc_realn.bam 43853685171 BAM harmonized CPTAC3 0a9ab409-f15c-49f9-b566-0c21bbedb03d f24778a883f562cb08e7ee954fd1703a {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal"} -C3L-04359.WXS.T C3L-04359 GBM WXS tumor CPT0243280006 CPT0243280006.WholeExome.RP-1303.bam 29459091783 BAM aligned CPTAC3 24e7e71e-5588-4fb1-8837-044df6abd811 6a6acd19425e1ffc965882acda1882c1 {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor"} -C3L-04359.WXS.T.hg38 C3L-04359 GBM WXS tumor CPT0243280006 7dbf52e5-6cf7-44bf-b211-2941a5917899_wxs_gdc_realn.bam 40884138168 BAM harmonized CPTAC3 5308095c-11ed-4bf5-a175-0a632a0a250a 1993d9dc03651b3fbdfb0fea8e4f3a8f {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor"} -C3L-04361.MethArray.Green.A C3L-04361 LSCC Methylation_Array tissue_normal CPT0243460006 204367490090_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dc1f0b25-ec54-4692-9796-618a539ca955 5fb57657dfc7bc81695734f26f7134fd {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.MethArray.Green.T C3L-04361 LSCC Methylation_Array tumor CPT0243370006 204372030024_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 bc0761d7-feea-4e10-9ce7-9cd1fa30e3c0 514fa132b94be9de06606392fb993e73 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor"} -C3L-04361.MethArray.Red.A C3L-04361 LSCC Methylation_Array tissue_normal CPT0243460006 204367490090_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 4d3d80a2-2508-40ab-b5d5-21d4d26c2e24 f7b7c0553e73d500239036234f27d2c9 {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.MethArray.Red.T C3L-04361 LSCC Methylation_Array tumor CPT0243370006 204372030024_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 e2946636-c143-4dc4-892d-d61c7eb1c651 be2e936ca81ddeabcb371c1dbcc7d772 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor"} -C3L-04361.miRNA-Seq.A.hg38 C3L-04361 LSCC miRNA-Seq tissue_normal CPT0243460013 9b592bbe-1949-463a-a615-aa7f0ccab8d1_mirnaseq_gdc_realn.bam 191108749 BAM harmonized CPTAC3 6bbdf0a6-ad0e-45ec-8d0e-82972ba26bad 9be91afd2928a0a30907293bd23594ce {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.miRNA-Seq.S10_L007_R1.A C3L-04361 LSCC miRNA-Seq tissue_normal CPT0243460013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGTACG_S10_L007_R1_001.unaln.bam 166756425 BAM S10_L007_R1 unaligned CPTAC3 de525a6b-07cf-4ca3-bee9-107791f0acb4 0083b624cdf49fdbf256418316ac08c1 {"aliquot_tag": "ALQ_1750b461", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.miRNA-Seq.S37_L007_R1.T C3L-04361 LSCC miRNA-Seq tumor CPT0243370009 200224_UNC31-K00269_0267_AHC722BBXY_CGGAAT_S37_L007_R1_001.unaln.bam 274965317 BAM S37_L007_R1 unaligned CPTAC3 93aad943-4444-4144-80e7-27c990f1e253 f4fd7d3834377afb93c0d4ab388f9562 {"aliquot_tag": "ALQ_cefb7536", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04361.miRNA-Seq.T.hg38 C3L-04361 LSCC miRNA-Seq tumor CPT0243370009 7145f826-1435-4daa-a19a-d797720da78c_mirnaseq_gdc_realn.bam 297664255 BAM harmonized CPTAC3 aa29fda2-c6b4-4237-954a-d45c2fa619cf 26095f928ec6bbe2f77861c2c0c06ee7 {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor"} -C3L-04361.RNA-Seq.chimeric.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.chimeric.gdc_realn.bam 72961346 BAM chimeric harmonized CPTAC3 762df6c4-8d05-40a5-99b1-ad58c0061bc0 17eb286de59c1b2b457e6bcb8b6404da {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.RNA-Seq.chimeric.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.chimeric.gdc_realn.bam 35108731 BAM chimeric harmonized CPTAC3 f91c2353-2b7a-4f48-9adf-64246f959147 1830fee39dda990567c2083fade83ed3 {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor"} -C3L-04361.RNA-Seq.genomic.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.genomic.gdc_realn.bam 7328783790 BAM genomic harmonized CPTAC3 77bdce50-6074-4748-833f-ad2b2b4fc387 8a82d59e3a2fe4a44604d4abe7142d2d {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.RNA-Seq.genomic.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.genomic.gdc_realn.bam 7402836849 BAM genomic harmonized CPTAC3 ce131bfc-8f1d-4c9b-9305-632518484c9d 54422e754375844484a4d58275c6673c {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor"} -C3L-04361.RNA-Seq.S22_L006_R1.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R1_001.fastq.gz 3528552695 FASTQ S22_L006_R1 unaligned CPTAC3 36a67212-56b0-4ecc-a9e5-3f1399f8df22 c5f1065efddb4319bee1969411353dfb {"aliquot_tag": "ALQ_1750b461", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.RNA-Seq.S22_L006_R2.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R2_001.fastq.gz 4006020067 FASTQ S22_L006_R2 unaligned CPTAC3 0bddc86c-98fe-4302-a0c2-267cea3c03a0 050ed390294d9a31406b6972beea6894 {"aliquot_tag": "ALQ_1750b461", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.RNA-Seq.S5_L002_R1.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R1_001.fastq.gz 3669104306 FASTQ S5_L002_R1 unaligned CPTAC3 4319f038-f4b4-4273-8fa2-ee5269adce7c 54886dc0f2c7dbab746e9e19c41a0427 {"aliquot_tag": "ALQ_cefb7536", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04361.RNA-Seq.S5_L002_R2.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R2_001.fastq.gz 3902034327 FASTQ S5_L002_R2 unaligned CPTAC3 0dc815c3-389f-411d-920f-9290badb83e2 bc2c04722b790505975e47420120ab60 {"aliquot_tag": "ALQ_cefb7536", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04361.RNA-Seq.transcriptome.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.transcriptome.gdc_realn.bam 9285032794 BAM transcriptome harmonized CPTAC3 a241ad65-f2bb-4de1-b7bc-86b7bb5d7692 ee6ddb08b3ac4b7354be6a40329fe4d3 {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.RNA-Seq.transcriptome.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.transcriptome.gdc_realn.bam 9700057148 BAM transcriptome harmonized CPTAC3 fccea160-9a41-4700-b915-ce03c26ece88 11de24e5e4f68086df1d599d59491077 {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor"} -C3L-04361.WGS.N C3L-04361 LSCC WGS blood_normal CPT0243530002 CPT0243530002.WholeGenome.RP-2158.bam 33559873290 BAM aligned CPTAC3 406c524c-0315-4786-a890-b57094c79f47 88a5c1123df8df294911a3be7a47eb3b {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal"} -C3L-04361.WGS.N C3L-04361 LSCC WGS blood_normal CPT0243530002 CPT0243530002.WholeGenome.RP-2158.bam 33616871030 BAM aligned CPTAC3 b2ac9f92-0aa9-476e-a9aa-667db7ee8ef5 0ede51828c14f436ec326f867307cf32 {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal"} -C3L-04361.WGS.N.hg38 C3L-04361 LSCC WGS blood_normal CPT0243530002 84411001-c027-4951-b815-ff6ed4482914_wgs_gdc_realn.bam 100080652674 BAM harmonized CPTAC3 62d41a03-8349-40fa-bd86-f48e41d8d9b2 9c2fdc4b28f543952b6c4ce11160f1bd {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal"} -C3L-04361.WGS.T C3L-04361 LSCC WGS tumor CPT0243370006 CPT0243370006.WholeGenome.RP-2158.bam 30172514538 BAM aligned CPTAC3 6ff02772-d4d3-48f6-9125-618dcab976ee d59c9fa3400363d480992a274a9b3b46 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor"} -C3L-04361.WGS.T.hg38 C3L-04361 LSCC WGS tumor CPT0243370006 6eb8c4ee-7977-49ea-9e1f-dc640032b670_wgs_gdc_realn.bam 88686010736 BAM harmonized CPTAC3 8f462f6a-1d87-4669-bd8d-c4a32b90af14 a73c67e18f21095064fa75b664e50611 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor"} -C3L-04361.WXS.A C3L-04361 LSCC WXS tissue_normal CPT0243460006 CPT0243460006.WholeExome.RP-1303.bam 18648176730 BAM aligned CPTAC3 4cad459b-4fbc-4e9d-9155-c2470d949270 3d164599bdab9fcfcfb344edf20793c9 {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.WXS.A.hg38 C3L-04361 LSCC WXS tissue_normal CPT0243460006 3455f00f-6424-4db9-9aaa-a625b05f0be4_wxs_gdc_realn.bam 26362204751 BAM harmonized CPTAC3 7cb57aa7-cce1-4001-b899-5c91630f9610 ce13d8f1cf8f4605deab1bd95c65a63a {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04361.WXS.N C3L-04361 LSCC WXS blood_normal CPT0243530002 CPT0243530002.WholeExome.RP-1303.bam 26739372608 BAM aligned CPTAC3 35a1cd2a-65d5-4e0c-865e-d8798a3fe512 3a0ae302f586954fd8b47b51c1ba28c9 {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal"} -C3L-04361.WXS.N.hg38 C3L-04361 LSCC WXS blood_normal CPT0243530002 84411001-c027-4951-b815-ff6ed4482914_wxs_gdc_realn.bam 36559856409 BAM harmonized CPTAC3 979dcfe7-ebb4-48a6-86da-f904b6fcbd94 4fe8b323831d9eb72bff1a0513302bbe {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal"} -C3L-04361.WXS.T C3L-04361 LSCC WXS tumor CPT0243370006 CPT0243370006.WholeExome.RP-1303.bam 23398349836 BAM aligned CPTAC3 711f72d8-f9a8-436f-829e-57172f3a0bf8 22a21baec8edd9d18e88cc6ff1bc2493 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor"} -C3L-04361.WXS.T.hg38 C3L-04361 LSCC WXS tumor CPT0243370006 6eb8c4ee-7977-49ea-9e1f-dc640032b670_wxs_gdc_realn.bam 32028750268 BAM harmonized CPTAC3 a4444e1f-5b3f-4ad3-a0e2-5105dd2eb569 b5fbedcc945fd35b63155943eb3ce7df {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor"} -C3L-04362.MethArray.Green.T C3L-04362 GBM Methylation_Array tumor CPT0233810006 204930640082_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b27baa7f-35f9-4ba4-a8fc-da2c82adbb17 dd7fabf5dd42a5ac077537388d6d224d {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor"} -C3L-04362.MethArray.Red.T C3L-04362 GBM Methylation_Array tumor CPT0233810006 204930640082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 46aa5bb3-a8e5-4be6-a992-d220a0051db8 e63a12c1f80f0a8320840d0367dd11c2 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor"} -C3L-04362.miRNA-Seq.S25_L002_R1.T C3L-04362 GBM miRNA-Seq tumor CPT0233810012 200403_UNC31-K00269_0274_AHCF7GBBXY_ATCACG_S25_L002_R1_001.unaln.bam 218585221 BAM S25_L002_R1 unaligned CPTAC3 74efb625-7e6f-4645-b8cf-38bef59d3b3e badbf1629cee3e520add04bdba9f164d {"aliquot_tag": "ALQ_af709185", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04362.miRNA-Seq.T.hg38 C3L-04362 GBM miRNA-Seq tumor CPT0233810012 dad677bc-13f3-463b-8645-8b0d2b7522a1_mirnaseq_gdc_realn.bam 243210995 BAM harmonized CPTAC3 a506ff9c-db7b-44b2-a981-d3b199e42133 54435d3e81c607640a96488e6293fe91 {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor"} -C3L-04362.RNA-Seq.chimeric.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.chimeric.gdc_realn.bam 297523829 BAM chimeric harmonized CPTAC3 4dc30a35-562b-4071-bca2-05cb8f375176 74e42efee53e0e9113b7eceb5117d8f9 {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor"} -C3L-04362.RNA-Seq.genomic.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.genomic.gdc_realn.bam 9085394425 BAM genomic harmonized CPTAC3 de450457-9a42-40e9-be64-95add2880609 b67143e7ee042b77147dafb6c86a9b7f {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor"} -C3L-04362.RNA-Seq.S5_L007_R1.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ S5_L007_R1 unaligned CPTAC3 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c 3b96f98595354bd05237c4cfa1d3f108 {"aliquot_tag": "ALQ_af709185", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04362.RNA-Seq.S5_L007_R2.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ S5_L007_R2 unaligned CPTAC3 710ec59e-1735-4dd5-ba70-ce35329cac5c b0071d3c6aaf2cd5b9f8c29fcb69096d {"aliquot_tag": "ALQ_af709185", "sample": "S5", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04362.RNA-Seq.transcriptome.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.transcriptome.gdc_realn.bam 8945422143 BAM transcriptome harmonized CPTAC3 dbf250eb-3831-4387-a93e-50a63033bd14 9c94adb46e62f1ef6b65c117caf0c5fc {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor"} -C3L-04362.WGS.N C3L-04362 GBM WGS blood_normal CPT0233870002 CPT0233870002.WholeGenome.RP-2158.bam 21818987189 BAM aligned CPTAC3 48b7e473-ab3c-4dd1-85a5-170e3044b384 84ff0eb41d5d02f3b641ec787b84dec0 {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal"} -C3L-04362.WGS.N.hg38 C3L-04362 GBM WGS blood_normal CPT0233870002 6b29a573-c2f6-4614-9f25-14c918babfa8_wgs_gdc_realn.bam 62812379070 BAM harmonized CPTAC3 1ac3d361-eef2-4263-85c2-f8748a9379cf e9aca33ad0448904c426468091283757 {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal"} -C3L-04362.WGS.T C3L-04362 GBM WGS tumor CPT0233810006 CPT0233810006.WholeGenome.RP-2158.bam 25430839932 BAM aligned CPTAC3 83bea774-1862-4ec9-8f58-e724421f7f1f cb972885ed82534ba94d66f4a5708866 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor"} -C3L-04362.WGS.T.hg38 C3L-04362 GBM WGS tumor CPT0233810006 54bcff95-090d-41c1-92c6-66140f4b3ab9_wgs_gdc_realn.bam 73951272849 BAM harmonized CPTAC3 dddd8326-8131-4431-8f69-3bb571ce57e9 7a58c50af833f4a7908c947307e7e476 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor"} -C3L-04362.WXS.N C3L-04362 GBM WXS blood_normal CPT0233870002 CPT0233870002.WholeExome.RP-1303.bam 34607798389 BAM aligned CPTAC3 8c1fda25-6db9-4fef-abce-0bd6d84af2c5 27158bc936c4061b13b5aea3f4841f4c {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal"} -C3L-04362.WXS.N.hg38 C3L-04362 GBM WXS blood_normal CPT0233870002 6b29a573-c2f6-4614-9f25-14c918babfa8_wxs_gdc_realn.bam 47074453455 BAM harmonized CPTAC3 39a56545-fb06-4f46-bec5-44025a89bc72 8a5d8cd6cf8e31c5ebbcc7cfd6f85e89 {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal"} -C3L-04362.WXS.T C3L-04362 GBM WXS tumor CPT0233810006 CPT0233810006.WholeExome.RP-1303.bam 22808134674 BAM aligned CPTAC3 f329c74e-37e8-4d8b-b491-2cce7ee8954b bb48500a97d17de8a08e535ba8972a65 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor"} -C3L-04362.WXS.T.hg38 C3L-04362 GBM WXS tumor CPT0233810006 54bcff95-090d-41c1-92c6-66140f4b3ab9_wxs_gdc_realn.bam 32536843115 BAM harmonized CPTAC3 9777e76d-b1b6-4f1d-b8d7-592e2e538b4b fd285a4367525fc4fbb73283e749d5ac {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor"} -C3L-04365.MethArray.Green.A C3L-04365 LUAD Methylation_Array tissue_normal CPT0243620006 203561620008_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 edfd76df-75d4-4c67-a864-6a49c47596ab c903774c00f60317bcd9103d15521d4f {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.MethArray.Green.T C3L-04365 LUAD Methylation_Array tumor CPT0243560007 203561450027_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 175ed898-0663-4be9-a17c-14d56a06ff0d d8d9c2a3c98499cc6760100217afd221 {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor"} -C3L-04365.MethArray.Red.A C3L-04365 LUAD Methylation_Array tissue_normal CPT0243620006 203561620008_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 33f98e53-0b48-4222-8a2b-e98561ade887 6483bc2f53c88f052fe1c0ef14faf1e7 {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.MethArray.Red.T C3L-04365 LUAD Methylation_Array tumor CPT0243560007 203561450027_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 1a62b9cb-2c5d-4b8c-a860-f8c666ac3188 9b7f0c14329cb37f7929f33a04f1a417 {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor"} -C3L-04365.miRNA-Seq.A.hg38 C3L-04365 LUAD miRNA-Seq tissue_normal CPT0243620009 1e8acd45-417c-446f-86a1-284eb1f05adf_mirnaseq_gdc_realn.bam 220303342 BAM harmonized CPTAC3 cadbdf13-71ad-4e13-8147-288251fb553e ffabedb43f0bdeab308c5723f09d7614 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.miRNA-Seq.S34_L006_R1.A C3L-04365 LUAD miRNA-Seq tissue_normal CPT0243620009 190722_UNC31-K00269_0234_AH7VGTBBXY_GACGAC_S34_L006_R1_001.unaln.bam 196331321 BAM S34_L006_R1 unaligned CPTAC3 0ccf2a60-7894-4f27-8b02-351df62d628c 8a5715d7867855d02c084f91051158f8 {"aliquot_tag": "ALQ_56d66bf5", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.miRNA-Seq.S42_L007_R1.T C3L-04365 LUAD miRNA-Seq tumor CPT0243560010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGATGT_S42_L007_R1_001.unaln.bam 192088467 BAM S42_L007_R1 unaligned CPTAC3 d1523248-e71d-4153-9eb1-e8fc5bc728e6 c96167ec3a1da776f14ead5538bbdf1e {"aliquot_tag": "ALQ_4505367e", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04365.miRNA-Seq.T.hg38 C3L-04365 LUAD miRNA-Seq tumor CPT0243560010 7a7a0e8c-6d93-4b0c-8575-5dca4d719703_mirnaseq_gdc_realn.bam 209739877 BAM harmonized CPTAC3 56d5f03d-1cee-4d31-93a3-471bb66ce1fc 4ce586629031de1a2dbf711f819c77c1 {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor"} -C3L-04365.RNA-Seq.chimeric.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.chimeric.gdc_realn.bam 42366532 BAM chimeric harmonized CPTAC3 cfcdcc59-2b93-4a59-99ad-07bed1415d9e 764a01c473d6064f2ec3f9b9101ca4f7 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.RNA-Seq.chimeric.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.chimeric.gdc_realn.bam 48412560 BAM chimeric harmonized CPTAC3 fa48c88a-5d54-49e2-84cf-9f5186373e79 084ef47d3b2523c996eb48d471a80bdd {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor"} -C3L-04365.RNA-Seq.genomic.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.genomic.gdc_realn.bam 18111332381 BAM genomic harmonized CPTAC3 f30af778-844b-40a4-8014-c5addf8d99e8 590c6fa938ac85dfed78af85e6f46f55 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.RNA-Seq.genomic.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.genomic.gdc_realn.bam 10137535266 BAM genomic harmonized CPTAC3 87f3a04d-49c6-480a-9b75-7f2ba294daa6 0bd893defa60d1b0e9e99540dbc3035b {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor"} -C3L-04365.RNA-Seq.S32_L008_R1.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R1_001.fastq.gz 4657284691 FASTQ S32_L008_R1 unaligned CPTAC3 c4bfca38-143c-4f88-b32c-7e398e7bfa49 b39845ad230f086b63073c6420610dee {"aliquot_tag": "ALQ_4505367e", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04365.RNA-Seq.S32_L008_R2.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R2_001.fastq.gz 5130280500 FASTQ S32_L008_R2 unaligned CPTAC3 c15c72fa-9846-4df6-9322-f8ee76f8731d a9e6846a8aea05fd973d85dbd3cfd1c8 {"aliquot_tag": "ALQ_4505367e", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04365.RNA-Seq.S6_L002_R1.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 5996872719 FASTQ S6_L002_R1 unaligned CPTAC3 bc53dff1-6948-4f36-9950-acd8af23606b c1ff96428c84d1e5c75c350a72a55837 {"aliquot_tag": "ALQ_56d66bf5", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.RNA-Seq.S6_L002_R2.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 7015601643 FASTQ S6_L002_R2 unaligned CPTAC3 12001ce1-a67d-4223-9aaa-f3a1a25b4aae 06bfe8b0bf071a7d30e319ec0dc72786 {"aliquot_tag": "ALQ_56d66bf5", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.RNA-Seq.transcriptome.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.transcriptome.gdc_realn.bam 13107024558 BAM transcriptome harmonized CPTAC3 59d9a4f8-6964-4eb1-9f63-038b4ad12282 41f0fb79e2bc3c0a5bfb6a933a9fc216 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.RNA-Seq.transcriptome.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.transcriptome.gdc_realn.bam 10547090814 BAM transcriptome harmonized CPTAC3 5118f358-7992-4dad-b504-74229c83860a 7b6c5194b78c74a40639cc21d6e5c099 {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor"} -C3L-04365.WGS.N C3L-04365 LUAD WGS blood_normal CPT0243710002 CPT0243710002.WholeGenome.RP-1303.bam 85308527333 BAM aligned CPTAC3 26c73d86-e349-47d0-8ea4-461cebbb3253 6e480fe500aeba84f1616439bb4a2d53 {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal"} -C3L-04365.WGS.N.hg38 C3L-04365 LUAD WGS blood_normal CPT0243710002 a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wgs_gdc_realn.bam 124296999433 BAM harmonized CPTAC3 a65d2756-edfd-4640-ac1a-10ef43808513 2895c3063897784c7f2215664ae0f6ea {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal"} -C3L-04365.WGS.T C3L-04365 LUAD WGS tumor CPT0243560007 CPT0243560007.WholeGenome.RP-1303.bam 60269243874 BAM aligned CPTAC3 e2d52e98-0aa4-46b9-9e63-daa5b01b51e6 4032ce7952504abb9a5af24fbec52e9a {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor"} -C3L-04365.WGS.T.hg38 C3L-04365 LUAD WGS tumor CPT0243560007 f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wgs_gdc_realn.bam 88704198855 BAM harmonized CPTAC3 1c8c1e75-8f8f-448f-a584-cd062f4a2f7c 44ef020472da1652031b9616a284ca7d {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor"} -C3L-04365.WXS.A C3L-04365 LUAD WXS tissue_normal CPT0243620006 CPT0243620006.WholeExome.RP-1303.bam 20483000335 BAM aligned CPTAC3 69091bae-2508-460c-8f59-f018d785a014 d14a095439df16ca61b24db53917578b {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.WXS.A.hg38 C3L-04365 LUAD WXS tissue_normal CPT0243620006 1f5d7c92-cf45-4e13-ae33-5d2f30456320_wxs_gdc_realn.bam 28301321282 BAM harmonized CPTAC3 87e1a5ee-aa97-4fdf-a66a-d8269ac0b01c 25e868d6c0d097c2d9a398aa3e9fe1c6 {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04365.WXS.N C3L-04365 LUAD WXS blood_normal CPT0243710002 CPT0243710002.WholeExome.RP-1303.bam 27600019920 BAM aligned CPTAC3 12c737f2-078d-47d1-8a36-c217d02306c2 bbea6193601e914d87a4bf8bc48970cc {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal"} -C3L-04365.WXS.N.hg38 C3L-04365 LUAD WXS blood_normal CPT0243710002 a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wxs_gdc_realn.bam 38230343323 BAM harmonized CPTAC3 be1595fb-3fd7-44a8-9815-95f1278bd10f 24ee1ba0e776bcc55113c12777802f28 {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal"} -C3L-04365.WXS.T C3L-04365 LUAD WXS tumor CPT0243560007 CPT0243560007.WholeExome.RP-1303.bam 28190835608 BAM aligned CPTAC3 3f9127cc-32c1-41e2-8256-0ba7bd0f551d edfd091ee93a1401119a83446520ed4d {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor"} -C3L-04365.WXS.T.hg38 C3L-04365 LUAD WXS tumor CPT0243560007 f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wxs_gdc_realn.bam 39393500859 BAM harmonized CPTAC3 be58f912-7f40-4fec-ab26-cc968a0ee1aa 01ce5a2c24d1303986e8fcea699d7319 {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor"} -C3L-04367.MethArray.Green.A C3L-04367 LSCC Methylation_Array tissue_normal CPT0243940006 204367400087_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8c55786d-c4c7-4ca4-adf0-72f0d4cc3f06 c207a2312034581c95853e3410d8f55d {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.MethArray.Green.T C3L-04367 LSCC Methylation_Array tumor CPT0243930006 204367490061_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99b16cae-7663-4f9e-942e-910369391a9d 1b3b935c0884e09abd4d66cdc618ee3c {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor"} -C3L-04367.MethArray.Red.A C3L-04367 LSCC Methylation_Array tissue_normal CPT0243940006 204367400087_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 0145cdca-7740-47e3-a512-6af69117ff19 2b52fdb715a0c92a648635aa7da640dd {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.MethArray.Red.T C3L-04367 LSCC Methylation_Array tumor CPT0243930006 204367490061_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 6a3cc898-2fc7-413d-8a42-ac11abfc8b2e f38f6ab751ec8452cbdd5113f4acebef {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor"} -C3L-04367.miRNA-Seq.A.hg38 C3L-04367 LSCC miRNA-Seq tissue_normal CPT0243940009 55b7d942-9086-42e6-8b2f-6abfeec5d7e1_mirnaseq_gdc_realn.bam 260382374 BAM harmonized CPTAC3 f69f0cdc-1ff2-42e4-aa4b-4bc51f83806b 97e005d5d63270d2baa207cd3526cd05 {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.miRNA-Seq.S2_L005_R1.A C3L-04367 LSCC miRNA-Seq tissue_normal CPT0243940009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACTTGA_S2_L005_R1_001.unaln.bam 234292241 BAM S2_L005_R1 unaligned CPTAC3 4185f9c4-fa9d-4190-81d0-69c0786fa607 28186b1085114b18d181fd832db3fb0c {"aliquot_tag": "ALQ_28c02c80", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.miRNA-Seq.S36_L007_R1.T C3L-04367 LSCC miRNA-Seq tumor CPT0243930009 200224_UNC31-K00269_0267_AHC722BBXY_CCAACA_S36_L007_R1_001.unaln.bam 239986011 BAM S36_L007_R1 unaligned CPTAC3 c8759de0-f611-4e5a-9b29-3dc2e1baf228 f876730e9f78789d78f4fdfe185bef54 {"aliquot_tag": "ALQ_9ae0f090", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04367.miRNA-Seq.T.hg38 C3L-04367 LSCC miRNA-Seq tumor CPT0243930009 52184acc-f4df-4503-9230-52d4e52c0033_mirnaseq_gdc_realn.bam 268205976 BAM harmonized CPTAC3 96aef43b-6a37-4be1-9540-5795e9648c2e 4bd66b3ffc22331c2c153c6ca6e30217 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor"} -C3L-04367.RNA-Seq.chimeric.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.chimeric.gdc_realn.bam 39961912 BAM chimeric harmonized CPTAC3 6d400425-5106-44ae-83b6-341a510466de a91f35b1350d2d23e5728699514b8c9e {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.RNA-Seq.chimeric.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.chimeric.gdc_realn.bam 29644974 BAM chimeric harmonized CPTAC3 ad1c30b6-ded3-4b40-a41a-ce7b50e0fd7d 52d40b038a8445cb05481efcc2c7b286 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor"} -C3L-04367.RNA-Seq.genomic.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.genomic.gdc_realn.bam 8608083393 BAM genomic harmonized CPTAC3 3e45924f-6066-4895-b1a1-35926e7da93f c91e51c8ed4c1c4301a271b1daef2176 {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.RNA-Seq.genomic.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.genomic.gdc_realn.bam 7720062068 BAM genomic harmonized CPTAC3 986b6e0b-00a5-4f33-ad95-268df3b118fc 861a9c35fd7ca8a98f1d9d6a82b66e02 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor"} -C3L-04367.RNA-Seq.S4_L001_R1.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R1_001.fastq.gz 3654971803 FASTQ S4_L001_R1 unaligned CPTAC3 87bd023a-c17c-474f-bf93-d48fa86693c2 a58d59d4c151689960a5c06c57ea8262 {"aliquot_tag": "ALQ_9ae0f090", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04367.RNA-Seq.S4_L001_R2.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R2_001.fastq.gz 4050399091 FASTQ S4_L001_R2 unaligned CPTAC3 76ca8adc-2d34-4e5a-9949-cdbaf86d1349 2aee2fe2baa5769bde093e884aa566bc {"aliquot_tag": "ALQ_9ae0f090", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04367.RNA-Seq.S8_L006_R1.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R1_001.fastq.gz 4286563271 FASTQ S8_L006_R1 unaligned CPTAC3 05be3890-a463-4fbd-96ae-deee3dde3878 341ad4e3d289b967ab65edcc22f7825a {"aliquot_tag": "ALQ_28c02c80", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.RNA-Seq.S8_L006_R2.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R2_001.fastq.gz 4635442449 FASTQ S8_L006_R2 unaligned CPTAC3 d86aa58d-2fde-4e3f-9cc3-fb2dcc9276c1 0c9683559ef77a9d0341e88f4dd862b3 {"aliquot_tag": "ALQ_28c02c80", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.RNA-Seq.transcriptome.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.transcriptome.gdc_realn.bam 10892159147 BAM transcriptome harmonized CPTAC3 45608d68-1780-4082-b9ef-4ed2974904f3 4cbdd1426a656614a651862a6c16f3c8 {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.RNA-Seq.transcriptome.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.transcriptome.gdc_realn.bam 10703395760 BAM transcriptome harmonized CPTAC3 00a6a03f-c4bd-43e3-8063-a76eebaf6e81 f7dda343f9f5b63c899758e83d9f7253 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor"} -C3L-04367.WGS.N C3L-04367 LSCC WGS blood_normal CPT0244050002 CPT0244050002.WholeGenome.RP-2158.bam 25403172493 BAM aligned CPTAC3 ff135c1d-dc1e-46ca-af94-de34e471d172 43c17d9a7a1c64f30f8b221652d23cf0 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04367.WGS.N.hg38 C3L-04367 LSCC WGS blood_normal CPT0244050002 66c866b7-f3dd-4c3f-9317-9d2d37e285ec_wgs_gdc_realn.bam 78025372440 BAM harmonized CPTAC3 a952e3fe-75bd-458c-9bea-ff26afd66c0f d7fd251aa82375d27a514e6f80a56579 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04367.WGS.T C3L-04367 LSCC WGS tumor CPT0243930006 CPT0243930006.WholeGenome.RP-2158.bam 27117639764 BAM aligned CPTAC3 7d6fd656-0016-483c-9b10-4d0794c2503f 845f9b82cdc9d68bd7a7e0ea888d9911 {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor"} -C3L-04367.WGS.T.hg38 C3L-04367 LSCC WGS tumor CPT0243930006 6c67e8c8-b814-4670-be14-4625361e289e_wgs_gdc_realn.bam 83847748117 BAM harmonized CPTAC3 1f946dd6-dedf-475d-ba71-f6a6f69b47c4 b31992f61ba1076f495737648e40a747 {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor"} -C3L-04367.WXS.A C3L-04367 LSCC WXS tissue_normal CPT0243940006 CPT0243940006.WholeExome.RP-1303.bam 42507906378 BAM aligned CPTAC3 66299e3e-a0f8-4046-ba6b-824195342c93 6b620e92fd107fa1d9fa8f313ad01cc8 {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.WXS.A.hg38 C3L-04367 LSCC WXS tissue_normal CPT0243940006 50bc524c-337d-48c2-8ec1-f6b9f2887877_wxs_gdc_realn.bam 57949736237 BAM harmonized CPTAC3 9411e504-317c-4fae-9476-18b27d6dcc85 8c897a35e9f2e3bf4114c5a7422b7ba9 {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04367.WXS.N C3L-04367 LSCC WXS blood_normal CPT0244050002 CPT0244050002.WholeExome.RP-1303.bam 30578608788 BAM aligned CPTAC3 a8e46ac6-8b0a-41e9-b815-1aaca95669de e3e8586358661e64feb5e2e395a23b43 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04367.WXS.N.hg38 C3L-04367 LSCC WXS blood_normal CPT0244050002 66c866b7-f3dd-4c3f-9317-9d2d37e285ec_wxs_gdc_realn.bam 42001645363 BAM harmonized CPTAC3 5b8ebe75-31e9-4a04-a798-ce59f4845c5f 20314c4de93c503eeec3d067e0a86e10 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal"} -C3L-04367.WXS.T C3L-04367 LSCC WXS tumor CPT0243930006 CPT0243930006.WholeExome.RP-1303.bam 24329997687 BAM aligned CPTAC3 f72960b2-75ff-46d4-9f8b-72080a0cd75d 2475a2853d807c0b35740b43dff12488 {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor"} -C3L-04367.WXS.T.hg38 C3L-04367 LSCC WXS tumor CPT0243930006 6c67e8c8-b814-4670-be14-4625361e289e_wxs_gdc_realn.bam 33717973993 BAM harmonized CPTAC3 14c05a65-bed9-4a99-8b8a-5157af7a0814 59ca9290d907ca66ad972c23f3c7f18b {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor"} -C3L-04378.MethArray.Green.A C3L-04378 LSCC Methylation_Array tissue_normal CPT0253130009 204367460011_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 232c3ef2-609a-4c83-b961-0f5f305bf3fc c5cb446dec3342d2ef004124cab6a0c1 {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.MethArray.Green.T C3L-04378 LSCC Methylation_Array tumor CPT0253090006 204367400148_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e24e7e6b-b474-42ee-8bc0-b112be5c8c06 41420afea26d5ca36ca8d20e8c3af9b2 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor"} -C3L-04378.MethArray.Red.A C3L-04378 LSCC Methylation_Array tissue_normal CPT0253130009 204367460011_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 01c3b983-09d6-4204-95ec-67e446fabf48 d37b3ef87d3279657c2c42bf8ba79113 {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.MethArray.Red.T C3L-04378 LSCC Methylation_Array tumor CPT0253090006 204367400148_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 145c2fd5-fd36-4906-a1e3-801a454f27ce d744effd0a002882809abd78371ef453 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor"} -C3L-04378.miRNA-Seq.A.hg38 C3L-04378 LSCC miRNA-Seq tissue_normal CPT0253130006 e968ea62-5948-4a2a-a3ce-d54fd82afa39_mirnaseq_gdc_realn.bam 255662049 BAM harmonized CPTAC3 6c4b821b-2507-40e8-b51c-2735cbf05667 e42fd9af2e2004d3f8fdec1607d779c2 {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.miRNA-Seq.S18_L001_R1.T C3L-04378 LSCC miRNA-Seq tumor CPT0253090013 200325_UNC31-K00269_0272_AHHC2NBBXY_TAATCG_S18_L001_R1_001.unaln.bam 198109814 BAM S18_L001_R1 unaligned CPTAC3 60ad6ebb-f994-4403-b62b-b384bd3e9e33 d515543e4d81d8032d350299a770b3ac {"aliquot_tag": "ALQ_c23b6138", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04378.miRNA-Seq.S42_L006_R1.A C3L-04378 LSCC miRNA-Seq tissue_normal CPT0253130006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAATCG_S42_L006_R1_001.unaln.bam 230826500 BAM S42_L006_R1 unaligned CPTAC3 fd5d86d3-2b5b-4049-a005-77ecda179018 f7283561229ad3f95d69864fff2eec83 {"aliquot_tag": "ALQ_2aa66ff2", "sample": "S42", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.miRNA-Seq.T.hg38 C3L-04378 LSCC miRNA-Seq tumor CPT0253090013 8fb9d030-c6b1-46e7-98ce-db199e0438c2_mirnaseq_gdc_realn.bam 217721301 BAM harmonized CPTAC3 22017cab-9e2e-411b-9b14-e064ad844349 d3c7cfe34e113dddbcc6c695a7e0ecfb {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor"} -C3L-04378.RNA-Seq.chimeric.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.chimeric.gdc_realn.bam 30990373 BAM chimeric harmonized CPTAC3 bba4fe68-93f1-4093-be92-f47efdfde70c 683c4e13c9054ba18f786bbe117dec9e {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.RNA-Seq.chimeric.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.chimeric.gdc_realn.bam 67627609 BAM chimeric harmonized CPTAC3 c4f4805e-240c-48b3-8f8a-b99080b531b0 afa3030d0e15d5ec36c4ce27079216fd {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor"} -C3L-04378.RNA-Seq.genomic.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.genomic.gdc_realn.bam 7728998345 BAM genomic harmonized CPTAC3 4a022d51-cdec-42c3-9acc-776b166e8053 2e38c2ac4cad7d50ebc14c485c8859fd {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.RNA-Seq.genomic.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.genomic.gdc_realn.bam 8227597738 BAM genomic harmonized CPTAC3 91cdaa4c-4768-48f4-9d6a-764750e074c6 18d2bd13ffb837fcd902a3a638c5b8ec {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor"} -C3L-04378.RNA-Seq.S26_L007_R1.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R1_001.fastq.gz 4228164914 FASTQ S26_L007_R1 unaligned CPTAC3 8d742e60-e2ad-4582-86e7-fafbc1dd0c23 21dad26826390cd37d598c85bf9a9d14 {"aliquot_tag": "ALQ_c23b6138", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04378.RNA-Seq.S26_L007_R2.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R2_001.fastq.gz 4348810230 FASTQ S26_L007_R2 unaligned CPTAC3 0c78e1e1-c0dd-48d6-a34b-6ef85a299153 b8ef57e0c39a8401e1da88786ed47dc8 {"aliquot_tag": "ALQ_c23b6138", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04378.RNA-Seq.S27_L007_R1.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R1_001.fastq.gz 3418029399 FASTQ S27_L007_R1 unaligned CPTAC3 bf5e8149-2c96-4d05-97be-0c728c51af90 eba722686f88f2d8afab420bec7706af {"aliquot_tag": "ALQ_2aa66ff2", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.RNA-Seq.S27_L007_R2.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R2_001.fastq.gz 4223918706 FASTQ S27_L007_R2 unaligned CPTAC3 d616db06-54ba-454a-bd91-9356ab737e17 ab39c16b32548f17ab6a96ab18882331 {"aliquot_tag": "ALQ_2aa66ff2", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.RNA-Seq.transcriptome.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.transcriptome.gdc_realn.bam 9406503853 BAM transcriptome harmonized CPTAC3 eaaec588-9a2b-4303-8b77-abc32fa902a3 460d34f1cb3c26079b6123459105b5ae {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.RNA-Seq.transcriptome.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.transcriptome.gdc_realn.bam 10793078534 BAM transcriptome harmonized CPTAC3 cbae9049-43dc-4f3a-b4ac-05f058e68c2e 66fa43eb4d3d69cf943ec8604d43c63f {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor"} -C3L-04378.WGS.N C3L-04378 LSCC WGS blood_normal CPT0253240002 CPT0253240002.WholeGenome.RP-2158.bam 30279299575 BAM aligned CPTAC3 24a0a9ea-bff7-4403-89b4-5705129d6245 0ab83e8f6d4aa93cc27946a1c42109f9 {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal"} -C3L-04378.WGS.N.hg38 C3L-04378 LSCC WGS blood_normal CPT0253240002 862ce011-5c33-4644-8531-1b57170aa9aa_wgs_gdc_realn.bam 91657286140 BAM harmonized CPTAC3 442a8e18-cb34-4035-af1c-6dd4be88647c 0a5d36be679db7ce5607d6673b8ec100 {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal"} -C3L-04378.WGS.T C3L-04378 LSCC WGS tumor CPT0253090006 CPT0253090006.WholeGenome.RP-2158.bam 24254876470 BAM aligned CPTAC3 d4e5d622-26fa-4af6-a200-4f7cfb0a2402 7586783811b2158f7464aac883d94255 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor"} -C3L-04378.WGS.T.hg38 C3L-04378 LSCC WGS tumor CPT0253090006 996dad95-2c54-4866-9aca-9b5e90775fb7_wgs_gdc_realn.bam 70450220270 BAM harmonized CPTAC3 8b8103d0-513b-4ecc-b879-c7c690b87660 a0e43f29d693914fecc5e3b8ddf13a7b {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor"} -C3L-04378.WXS.A C3L-04378 LSCC WXS tissue_normal CPT0253130009 CPT0253130009.WholeExome.RP-1303.bam 18317138231 BAM aligned CPTAC3 8fdc3cde-074e-45ce-b815-8ecb017fc619 583ed46d69a46772239c3f4a5b88c700 {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.WXS.A.hg38 C3L-04378 LSCC WXS tissue_normal CPT0253130009 3e04d575-df92-4f62-8dee-9638c5d933e4_wxs_gdc_realn.bam 25222843483 BAM harmonized CPTAC3 ed7ed69b-210c-44f7-893e-115dfd44e2ab 14f5e5b8b41ca825a83566370885f41b {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04378.WXS.N C3L-04378 LSCC WXS blood_normal CPT0253240002 CPT0253240002.WholeExome.RP-1303.bam 26078072039 BAM aligned CPTAC3 bffabf7f-40c2-41a3-a8dc-62a3d8d2d607 2fb92711aa5ce4c95b076ce4e78f930c {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal"} -C3L-04378.WXS.N.hg38 C3L-04378 LSCC WXS blood_normal CPT0253240002 862ce011-5c33-4644-8531-1b57170aa9aa_wxs_gdc_realn.bam 35163087499 BAM harmonized CPTAC3 fa95fd35-90a7-41f7-bb5a-0457d118ad47 55edf889b50b842aea02e0a68de285fe {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal"} -C3L-04378.WXS.T C3L-04378 LSCC WXS tumor CPT0253090006 CPT0253090006.WholeExome.RP-1303.bam 26208736814 BAM aligned CPTAC3 45c9e664-9e16-4af1-91a0-b3c910c3e00b 8e892199e4b6d86a23f73423d40c1169 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor"} -C3L-04378.WXS.T.hg38 C3L-04378 LSCC WXS tumor CPT0253090006 996dad95-2c54-4866-9aca-9b5e90775fb7_wxs_gdc_realn.bam 36888245759 BAM harmonized CPTAC3 14bb50f9-db76-4f9b-b8b1-3de1c55a2e62 5829e07794e000ef0de757936ebe19af {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor"} -C3L-04379.MethArray.Green.A C3L-04379 LSCC Methylation_Array tissue_normal CPT0258830006 204372030079_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 3bff55e9-0709-400e-9461-839a0071013b 745e96920e97e7dc651e35985a70005a {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.MethArray.Green.T C3L-04379 LSCC Methylation_Array tumor CPT0258790006 204372030161_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1bdfc188-95c8-421e-bf72-914bbb1ea37e eb4b1808b5016b095fc0367632bc252e {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor"} -C3L-04379.MethArray.Red.A C3L-04379 LSCC Methylation_Array tissue_normal CPT0258830006 204372030079_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 68718e29-aedb-4a4f-813a-8c234f662bc0 de5a373446ae5772995b51d9f89c0805 {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.MethArray.Red.T C3L-04379 LSCC Methylation_Array tumor CPT0258790006 204372030161_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 fb7bead9-02bf-4491-a0d4-530c69288bcd 6ded99d9b81496074737ab33658263c6 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor"} -C3L-04379.miRNA-Seq.A.hg38 C3L-04379 LSCC miRNA-Seq tissue_normal CPT0258830009 f59b66fd-e54e-40d7-b4c0-8b3df7add380_mirnaseq_gdc_realn.bam 304081288 BAM harmonized CPTAC3 ab19416a-c1fd-4e2d-8a59-657040d7f97c 39fa170ab6fd38abb7a21967ae047e6e {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.miRNA-Seq.S10_L006_R1.T C3L-04379 LSCC miRNA-Seq tumor CPT0258790009 200224_UNC31-K00269_0267_AHC722BBXY_TAGCTT_S10_L006_R1_001.unaln.bam 235231599 BAM S10_L006_R1 unaligned CPTAC3 807cebfa-a3e9-4127-9ae5-dfef6c8bfdf1 0aeb96e477996612d23c5eeba5d67797 {"aliquot_tag": "ALQ_24f7dd25", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04379.miRNA-Seq.S22_L007_R1.A C3L-04379 LSCC miRNA-Seq tissue_normal CPT0258830009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAGCTT_S22_L007_R1_001.unaln.bam 279438602 BAM S22_L007_R1 unaligned CPTAC3 67d13804-ec66-481f-afcc-b9f6d97d948a c2f10401bea4c3cc5d2d93affb58173d {"aliquot_tag": "ALQ_9f117751", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.miRNA-Seq.T.hg38 C3L-04379 LSCC miRNA-Seq tumor CPT0258790009 4495da1a-11be-495a-b806-4ad64b4bd81f_mirnaseq_gdc_realn.bam 260039928 BAM harmonized CPTAC3 c5633da2-b2a2-446d-b191-a0f1e90cafff 7ec8c36a14d7943c32eb6d7032ba6d14 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor"} -C3L-04379.RNA-Seq.chimeric.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.chimeric.gdc_realn.bam 102415248 BAM chimeric harmonized CPTAC3 6bfc5a0e-ada3-4173-bd9f-ed0d2f601f84 070e9b2bb6627bb2e8638159b0850438 {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.RNA-Seq.chimeric.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.chimeric.gdc_realn.bam 113172074 BAM chimeric harmonized CPTAC3 3d08b5b7-623e-49c7-93b9-1cf009cd845c ddaa77ed29ed36b8c26de5e5f2f08590 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor"} -C3L-04379.RNA-Seq.genomic.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.genomic.gdc_realn.bam 9200780146 BAM genomic harmonized CPTAC3 8c011a66-a1eb-4c3b-91f0-cd64bf51fb45 2ace3ba30bdc54b4756fa05b03ebc746 {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.RNA-Seq.genomic.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.genomic.gdc_realn.bam 7334872781 BAM genomic harmonized CPTAC3 2af3f8c0-c09f-4b6f-a0e0-4530b4dd303f cf5d194892cfd59a90ffef3758f23ec7 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor"} -C3L-04379.RNA-Seq.S10_L003_R1.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R1_001.fastq.gz 4402756906 FASTQ S10_L003_R1 unaligned CPTAC3 a67e93ba-923d-4ef4-9215-1d9399680796 dc72fc93c27915680196271d4df3136a {"aliquot_tag": "ALQ_9f117751", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.RNA-Seq.S10_L003_R2.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R2_001.fastq.gz 4910717795 FASTQ S10_L003_R2 unaligned CPTAC3 35d9c7a4-08c2-4aee-a984-22634bcc7fb2 c64dbfae7adc73caeddb8481e13974b1 {"aliquot_tag": "ALQ_9f117751", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.RNA-Seq.S26_L007_R1.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R1_001.fastq.gz 3602507671 FASTQ S26_L007_R1 unaligned CPTAC3 375cfed3-d945-482e-8f3a-e44533ff20d4 56d2ba42d86c24bda1ac5b0269f36807 {"aliquot_tag": "ALQ_24f7dd25", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04379.RNA-Seq.S26_L007_R2.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R2_001.fastq.gz 3802883422 FASTQ S26_L007_R2 unaligned CPTAC3 52102e19-6dce-4914-aad1-5b6ba6ad1419 bb5ea8bcfff2980953f1f95a0cc5bea0 {"aliquot_tag": "ALQ_24f7dd25", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04379.RNA-Seq.transcriptome.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.transcriptome.gdc_realn.bam 12274071631 BAM transcriptome harmonized CPTAC3 a642ca7d-2bb6-4e6b-bd0a-ba76aa35cfa8 3a9aaf8a6fbc7dda9651d3f30c99178a {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.RNA-Seq.transcriptome.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.transcriptome.gdc_realn.bam 7612933545 BAM transcriptome harmonized CPTAC3 4d2c0f00-9f43-4915-aa8a-f027631ca939 a51f8fb6e196993997d588753e393619 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor"} -C3L-04379.WGS.N C3L-04379 LSCC WGS blood_normal CPT0258940002 CPT0258940002.WholeGenome.RP-2158.bam 22380669080 BAM aligned CPTAC3 d5198e12-66f9-4b64-a782-e494f0053eec ba8d5e5bb03d69adb1b03d2c71e34124 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04379.WGS.N.hg38 C3L-04379 LSCC WGS blood_normal CPT0258940002 626f0195-bf7f-46f9-8461-8ca13e90aa70_wgs_gdc_realn.bam 65992264424 BAM harmonized CPTAC3 fd240ca7-62df-4822-b84f-556db25e7339 939172114cb901bf7727568b54dc7643 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04379.WGS.T C3L-04379 LSCC WGS tumor CPT0258790006 CPT0258790006.WholeGenome.RP-2158.bam 21247752803 BAM aligned CPTAC3 bb4b23e1-83f6-4b1a-b242-89a8e7705cf6 2b9ae148eb4fb65b051db57b19cb29f8 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor"} -C3L-04379.WGS.T.hg38 C3L-04379 LSCC WGS tumor CPT0258790006 3f41e1ca-98fb-430f-9872-00ab38b27063_wgs_gdc_realn.bam 61570515658 BAM harmonized CPTAC3 17fafc2f-bee1-4083-96d3-42a8ad6db92c 1b2c8b46ac441747601819d20da81c18 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor"} -C3L-04379.WXS.A C3L-04379 LSCC WXS tissue_normal CPT0258830006 CPT0258830006.WholeExome.RP-1303.bam 33637470015 BAM aligned CPTAC3 5494aa26-7b40-4199-9d6f-ff471f4f356e 156fa4e5e4481c6859196a1ef0b43b54 {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.WXS.A.hg38 C3L-04379 LSCC WXS tissue_normal CPT0258830006 4babb79a-b2d3-42fb-b5ee-163f5ead06da_wxs_gdc_realn.bam 46433548911 BAM harmonized CPTAC3 0e815360-e1d3-4e01-8f7e-5d8fea339f6f a4e4d860a8a88edd16c98733cb1eaaac {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04379.WXS.N C3L-04379 LSCC WXS blood_normal CPT0258940002 CPT0258940002.WholeExome.RP-1303.bam 25626888869 BAM aligned CPTAC3 cfb8e11a-2bbc-4acf-8c17-2717461b1cc7 f1263f8fd00b64063f923926614828b2 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04379.WXS.N.hg38 C3L-04379 LSCC WXS blood_normal CPT0258940002 626f0195-bf7f-46f9-8461-8ca13e90aa70_wxs_gdc_realn.bam 35645192848 BAM harmonized CPTAC3 ecbe558a-46e9-4a62-a463-d71d54279534 14eea44efdd7009fcd5292eb0bbc6172 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04379.WXS.T C3L-04379 LSCC WXS tumor CPT0258790006 CPT0258790006.WholeExome.RP-1303.bam 49847641656 BAM aligned CPTAC3 6faf7b10-e4f1-4517-a7f6-f5880624b632 0c43af254f088af4fcbd3d44f842cabd {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor"} -C3L-04379.WXS.T.hg38 C3L-04379 LSCC WXS tumor CPT0258790006 3f41e1ca-98fb-430f-9872-00ab38b27063_wxs_gdc_realn.bam 67841108187 BAM harmonized CPTAC3 a52cc624-ee49-4b1b-910a-38695ea65e72 5cebf6aea9b0f96db46ce2d6bf268591 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor"} -C3L-04391.MethArray.Green.A C3L-04391 LSCC Methylation_Array tissue_normal CPT0234580006 203220070156_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7a99f97b-4c82-4531-8512-c5635a34b54a 3e7dc913ddb144880f44b09e622fc737 {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.MethArray.Green.T C3L-04391 LSCC Methylation_Array tumor CPT0234560006 203219670019_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 80757296-522f-4787-8fae-cd729eb30468 6cce0f866a16061ec453a085a084b1c7 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor"} -C3L-04391.MethArray.Red.A C3L-04391 LSCC Methylation_Array tissue_normal CPT0234580006 203220070156_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 55e771df-0026-4450-a67d-336dc7fdbcc7 d06c0ec5d0aa308772b3a3a0465f5511 {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.MethArray.Red.T C3L-04391 LSCC Methylation_Array tumor CPT0234560006 203219670019_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 ab7d15a0-a4df-4a47-9a1a-29955315f3aa e50211e6f485e146c03c04fb6c98604d {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor"} -C3L-04391.miRNA-Seq.A.hg38 C3L-04391 LSCC miRNA-Seq tissue_normal CPT0234580009 86192daa-a2a0-41dd-8bd7-33a7eacb1226_mirnaseq_gdc_realn.bam 194351617 BAM harmonized CPTAC3 9f831027-d0e7-42c0-9c96-d10669f9e4b6 81fa9db7cf4d37bcaf443e04c883e464 {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.miRNA-Seq.S18_L005_R1.A C3L-04391 LSCC miRNA-Seq tissue_normal CPT0234580009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGGCG_S18_L005_R1_001.unaln.bam 171119653 BAM S18_L005_R1 unaligned CPTAC3 1d5e5591-a635-4678-919f-7a98806d5a6c b3dac1da3dbcff68f7b1c5a2d61adba1 {"aliquot_tag": "ALQ_5590366d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.miRNA-Seq.S38_L004_R1.T C3L-04391 LSCC miRNA-Seq tumor CPT0234560009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGCTAC_S38_L004_R1_001.unaln.bam 193573833 BAM S38_L004_R1 unaligned CPTAC3 269b9ebd-d4de-43ed-990c-4238141d7057 09ee2955256a30aa828ba424875e3fec {"aliquot_tag": "ALQ_eaa0880c", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04391.miRNA-Seq.T.hg38 C3L-04391 LSCC miRNA-Seq tumor CPT0234560009 8a900578-d77f-44a3-b9a7-e63231305ede_mirnaseq_gdc_realn.bam 212571525 BAM harmonized CPTAC3 2c3fefef-a8a4-4786-b6be-b472530da10d 3e1db801858cf196319b2080528bec2d {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor"} -C3L-04391.RNA-Seq.chimeric.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.chimeric.gdc_realn.bam 124404815 BAM chimeric harmonized CPTAC3 126b5444-22b8-4c37-8de9-ed0e3d4e455c 7f7bbaca1689468c5e5725e20d63def8 {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.RNA-Seq.chimeric.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.chimeric.gdc_realn.bam 381544659 BAM chimeric harmonized CPTAC3 1c4b09b5-859d-40bf-acc1-941bbd21f724 75695776f9e77e1b1865cabfe66bd2d8 {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor"} -C3L-04391.RNA-Seq.genomic.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.genomic.gdc_realn.bam 7341117208 BAM genomic harmonized CPTAC3 0ff537c2-6f6f-4a57-b58e-f8ca17e7b13b 3aa0c77e5b79ec266d97b24b5c17e88b {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.RNA-Seq.genomic.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.genomic.gdc_realn.bam 8602160936 BAM genomic harmonized CPTAC3 28a222a2-f191-4186-ab67-1e7039e5117e e358ddb83af27bc16b860899c90a1f3a {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor"} -C3L-04391.RNA-Seq.S1_L001_R1.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3849084503 FASTQ S1_L001_R1 unaligned CPTAC3 22821061-ec85-4e1d-a424-b63a52995078 8e3ffdcbe574a8fa3a32a0f3590ba85a {"aliquot_tag": "ALQ_eaa0880c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04391.RNA-Seq.S1_L001_R2.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4468925645 FASTQ S1_L001_R2 unaligned CPTAC3 19cba40a-ed47-40ef-a828-905b782c3ecd 48242ebff289dd82f91da1c9deb335fe {"aliquot_tag": "ALQ_eaa0880c", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04391.RNA-Seq.S3_L007_R1.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R1_001.fastq.gz 3469292179 FASTQ S3_L007_R1 unaligned CPTAC3 6ff9da82-c1d1-48bb-b2ff-c5241ff3bd17 9c3553ff54bce5df7f8f00c2a2598b98 {"aliquot_tag": "ALQ_5590366d", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.RNA-Seq.S3_L007_R2.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3890281049 FASTQ S3_L007_R2 unaligned CPTAC3 f7e9960d-2451-4a44-a3a2-539450cf26d1 07a79b511d20f77332dfa6f9c39232a3 {"aliquot_tag": "ALQ_5590366d", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.RNA-Seq.transcriptome.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.transcriptome.gdc_realn.bam 8312179071 BAM transcriptome harmonized CPTAC3 7fc54b30-dabc-4052-ae1e-079b22782bff 82317bcd0bc96e1e86426d4e42c5773e {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.RNA-Seq.transcriptome.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.transcriptome.gdc_realn.bam 10692370655 BAM transcriptome harmonized CPTAC3 3a34120c-b424-4a12-ab63-095e5e9857d3 a9b2ecfd99e3a03b9b90801e34c6cd45 {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor"} -C3L-04391.WGS.N C3L-04391 LSCC WGS blood_normal CPT0235180002 CPT0235180002.WholeGenome.RP-1303.bam 54864648711 BAM aligned CPTAC3 d767bc8a-0868-4ea2-8e81-15a14cd88b0a 13a72c4e10a7d80a0e0ef7b2b95a0bea {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal"} -C3L-04391.WGS.N.hg38 C3L-04391 LSCC WGS blood_normal CPT0235180002 7d68aadc-cfad-474d-8cbd-98866b356245_wgs_gdc_realn.bam 81091303675 BAM harmonized CPTAC3 d22a2984-330a-4fda-b33b-85c32cd191ea 92fa2cbac72df64ba2ba8ca071e78018 {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal"} -C3L-04391.WGS.T C3L-04391 LSCC WGS tumor CPT0234560006 CPT0234560006.WholeGenome.RP-1303.bam 55204097682 BAM aligned CPTAC3 23878d11-a991-4988-8c74-922ae826e8cb bdad6760de30ae43231013a422850ab5 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor"} -C3L-04391.WGS.T.hg38 C3L-04391 LSCC WGS tumor CPT0234560006 a52caf88-af54-482a-adcc-5c303877aa1b_wgs_gdc_realn.bam 81007262049 BAM harmonized CPTAC3 0693edc4-6418-4abd-a114-d378f88dd700 c63aebdb1b02a20f1121d317905f3963 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor"} -C3L-04391.WXS.A C3L-04391 LSCC WXS tissue_normal CPT0234580006 CPT0234580006.WholeExome.RP-1303.bam 26337190886 BAM aligned CPTAC3 c4621bc2-713b-4ca8-8234-835a652e480e 8ff2126002450bb6670d87c1a5c258b4 {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.WXS.A.hg38 C3L-04391 LSCC WXS tissue_normal CPT0234580006 ac4e1492-1c42-4abe-92c8-3e9ddbefd745_wxs_gdc_realn.bam 36853142436 BAM harmonized CPTAC3 68749741-8772-4126-80b4-5c3379a7529d 1e79421cc033b00cc68fdd18b6d63afa {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04391.WXS.N C3L-04391 LSCC WXS blood_normal CPT0235180002 CPT0235180002.WholeExome.RP-1303.bam 26117548067 BAM aligned CPTAC3 989043de-8160-40a1-9b30-087280fe082b 89d9b31dbc9e5bf99fe0a031bc2182a5 {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal"} -C3L-04391.WXS.N.hg38 C3L-04391 LSCC WXS blood_normal CPT0235180002 7d68aadc-cfad-474d-8cbd-98866b356245_wxs_gdc_realn.bam 35963405537 BAM harmonized CPTAC3 fa19091c-05eb-40a3-8a34-08b810ae7475 04984ce30410b74086e0511c97abac7f {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal"} -C3L-04391.WXS.T C3L-04391 LSCC WXS tumor CPT0234560006 CPT0234560006.WholeExome.RP-1303.bam 24969656189 BAM aligned CPTAC3 0888f3e9-d002-48f2-92f4-f3de93e38468 172e10739e617722a6219f71689d46ad {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor"} -C3L-04391.WXS.T.hg38 C3L-04391 LSCC WXS tumor CPT0234560006 a52caf88-af54-482a-adcc-5c303877aa1b_wxs_gdc_realn.bam 34429160845 BAM harmonized CPTAC3 1bc99f74-4329-4248-ba2d-38dac011326a 3cb9a490d45bc7374c09c7ecc008c405 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor"} -C3L-04392.MethArray.Green.T C3L-04392 GBM Methylation_Array tumor CPT0393310006 204930640042_R08C01_Grn.idat 13677893 IDAT Green NA CPTAC3 70e79878-dd3c-4b81-b3b4-37b13d480ab2 b03ad51028e47fcc699fdffb437bba06 {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor"} -C3L-04392.MethArray.Red.T C3L-04392 GBM Methylation_Array tumor CPT0393310006 204930640042_R08C01_Red.idat 13677893 IDAT Red NA CPTAC3 9989b270-5a19-46cc-a174-d1e227eab9ca b735849af9a4deb8c7396b5d74464180 {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor"} -C3L-04392.miRNA-Seq.S38_L007_R1.T C3L-04392 GBM miRNA-Seq tumor CPT0393310009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAGCTT_S38_L007_R1_001.unaln.bam 358392894 BAM S38_L007_R1 unaligned CPTAC3 5432af42-018a-4faa-8492-77175e136ac0 47bf2742dd7a32550d450c429c968694 {"aliquot_tag": "ALQ_cdc58104", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04392.miRNA-Seq.T.hg38 C3L-04392 GBM miRNA-Seq tumor CPT0393310009 b7e66dc0-51bd-4974-b239-bcbef53ddef2_mirnaseq_gdc_realn.bam 383688020 BAM harmonized CPTAC3 aed02248-4e4d-4b98-ab13-bc1ed0167520 e781763afc0bd961eb17d5f454b63162 {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor"} -C3L-04392.RNA-Seq.chimeric.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.chimeric.gdc_realn.bam 533313906 BAM chimeric harmonized CPTAC3 4b84971b-14ac-4743-baea-4f863f514e45 85c88b8435686ed850e3edae2b8a29de {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor"} -C3L-04392.RNA-Seq.genomic.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.genomic.gdc_realn.bam 8489469921 BAM genomic harmonized CPTAC3 07d0687f-64ed-47d5-99ed-28cd07a64da9 713f418df941ff03517268dc926f2ce2 {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor"} -C3L-04392.RNA-Seq.S2_L001_R1.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ S2_L001_R1 unaligned CPTAC3 d815c7ac-1edc-4e57-a53b-947849bdb025 7f57961d1f57e808fba6a0a2d9b8869f {"aliquot_tag": "ALQ_cdc58104", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04392.RNA-Seq.S2_L001_R2.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ S2_L001_R2 unaligned CPTAC3 65353cb8-0cb1-4747-a95d-b11ff0bc7361 5cdf19e1b0bae31ef1932a8e1f1e687d {"aliquot_tag": "ALQ_cdc58104", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04392.RNA-Seq.transcriptome.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.transcriptome.gdc_realn.bam 9858589719 BAM transcriptome harmonized CPTAC3 de27e4da-ab2c-44f9-b7ff-b3a83a916736 3dc81c530569b7d39f188f1044515bc8 {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor"} -C3L-04392.WGS.N C3L-04392 GBM WGS blood_normal CPT0392370002 CPT0392370002.WholeGenome.RP-2158.bam 24049436111 BAM aligned CPTAC3 f243bcd7-9195-4d38-817f-618977fb28eb c2775ba6b3e3e724e3ee4db10ef63778 {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal"} -C3L-04392.WGS.N.hg38 C3L-04392 GBM WGS blood_normal CPT0392370002 ff58cfa7-a42b-4c49-81b2-a55b9d871181_wgs_gdc_realn.bam 71169654491 BAM harmonized CPTAC3 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 8f527a3751c360fd4c71b267d404420a {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal"} -C3L-04392.WGS.T C3L-04392 GBM WGS tumor CPT0393310006 CPT0393310006.WholeGenome.RP-2158.bam 25106387064 BAM aligned CPTAC3 35aee152-5492-4664-8706-ca92247a2a81 f55a8d674bd88870ed7e381417c7214e {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor"} -C3L-04392.WGS.T.hg38 C3L-04392 GBM WGS tumor CPT0393310006 156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wgs_gdc_realn.bam 78098439529 BAM harmonized CPTAC3 aa97d6a5-ecfe-4536-8f34-dc07208769eb e349bd8bf78d93b04cce674ef560d912 {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor"} -C3L-04392.WXS.N C3L-04392 GBM WXS blood_normal CPT0392370002 CPT0392370002.WholeExome.RP-1303.bam 29321820408 BAM aligned CPTAC3 097aa948-f10b-46c4-b757-6cdb889edd9a abb9dd25e41f6240ac63d471f6fbeb75 {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal"} -C3L-04392.WXS.N.hg38 C3L-04392 GBM WXS blood_normal CPT0392370002 ff58cfa7-a42b-4c49-81b2-a55b9d871181_wxs_gdc_realn.bam 40870259415 BAM harmonized CPTAC3 ad13323f-754b-4392-8a91-3cc76915b63c 25b391aa311ac1fee33c0259e24ff870 {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal"} -C3L-04392.WXS.T C3L-04392 GBM WXS tumor CPT0393310006 CPT0393310006.WholeExome.RP-1303.bam 23350456251 BAM aligned CPTAC3 c050abe1-2236-4049-91c5-97cfb29cf143 84e7bac0f009916352bb4210e72c58ad {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor"} -C3L-04392.WXS.T.hg38 C3L-04392 GBM WXS tumor CPT0393310006 156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wxs_gdc_realn.bam 32227999506 BAM harmonized CPTAC3 96e5a83a-8889-43f6-abe3-2ce778568d80 e95c174c1c0cab8add5a2526ad983d8d {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor"} -C3L-04402.MethArray.Green.A C3L-04402 LSCC Methylation_Array tissue_normal CPT0281070006 204372030106_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6acb3061-7ba5-4fa5-85a4-598fe4854d5c fe1cca1aa5969c53a1fe7600d48c3d13 {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04402.MethArray.Green.T C3L-04402 LSCC Methylation_Array tumor CPT0281060006 204372030022_R08C01_Grn.idat 13677905 IDAT Green NA CPTAC3 0084b1e1-a779-42a1-bc68-844f50232b06 ec242afebe1fd32729c708c31f6e3b76 {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor"} -C3L-04402.MethArray.Red.A C3L-04402 LSCC Methylation_Array tissue_normal CPT0281070006 204372030106_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 e6c24881-9108-4b94-a3a0-5cd6e8894966 3f4c478a4d684bf32f2c76b28e42d7ab {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04402.MethArray.Red.T C3L-04402 LSCC Methylation_Array tumor CPT0281060006 204372030022_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 cddbec4b-8215-443f-83c1-17d101aed108 f62540d1747e4940920c7bd130415a1e {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor"} -C3L-04402.miRNA-Seq.S17_L008_R1.T C3L-04402 LSCC miRNA-Seq tumor CPT0281060009 200224_UNC31-K00269_0267_AHC722BBXY_GTAGAG_S17_L008_R1_001.unaln.bam 194460114 BAM S17_L008_R1 unaligned CPTAC3 94230a07-3396-48b9-b03e-5b65b85151a0 d0b24cb838140b87202dbe9c338b1872 {"aliquot_tag": "ALQ_b53f2a4e", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04402.miRNA-Seq.T.hg38 C3L-04402 LSCC miRNA-Seq tumor CPT0281060009 3905789c-2b5b-48e1-aaf6-da28dbe90e61_mirnaseq_gdc_realn.bam 220711963 BAM harmonized CPTAC3 2581b871-3cf7-425d-b0d1-5fa821dc1cc8 ded6b402250dcec8e5c300eb9a73c7a6 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor"} -C3L-04402.RNA-Seq.chimeric.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.chimeric.gdc_realn.bam 23110483 BAM chimeric harmonized CPTAC3 b236908f-e2ed-4c8b-9419-033c663636b7 1d11badf24e9ea8196151c7a5c1cba00 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor"} -C3L-04402.RNA-Seq.genomic.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.genomic.gdc_realn.bam 6925117317 BAM genomic harmonized CPTAC3 cb99c1e6-b493-4b86-9437-a505e2257a6e bbd9592f7e32df81a673fafcffa9b9c6 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor"} -C3L-04402.RNA-Seq.S1_L001_R1.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R1_001.fastq.gz 3116262455 FASTQ S1_L001_R1 unaligned CPTAC3 fd64d4c2-e55f-4b11-8b79-424993ec283f 21bae8de5a63f2c0343ea8e28bbe02ff {"aliquot_tag": "ALQ_b53f2a4e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04402.RNA-Seq.S1_L001_R2.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R2_001.fastq.gz 3434270972 FASTQ S1_L001_R2 unaligned CPTAC3 fcae66d9-1278-4d7a-85c1-0f8151392c0c d73a289f6c6c95edec8612602667d758 {"aliquot_tag": "ALQ_b53f2a4e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04402.RNA-Seq.transcriptome.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.transcriptome.gdc_realn.bam 8163548253 BAM transcriptome harmonized CPTAC3 55ac2c0f-3163-4c64-abf5-dd8df3d6ff15 f4e1e9bc1363b964d81894c4e1be83a0 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor"} -C3L-04402.WGS.N C3L-04402 LSCC WGS blood_normal CPT0285780002 CPT0285780002.WholeGenome.RP-2158.bam 26025114290 BAM aligned CPTAC3 c66365f5-f774-4440-ba53-b39f53e5c3d8 1ef42f8c7720279c1b156da9f75f6753 {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04402.WGS.N.hg38 C3L-04402 LSCC WGS blood_normal CPT0285780002 4dc3a96a-b762-4a23-b6ba-38791790b86b_wgs_gdc_realn.bam 77030429119 BAM harmonized CPTAC3 8f8f6dc0-542c-4b18-8264-62c54578599c 1dfc7c33402d06d75cbc409986913874 {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04402.WGS.T C3L-04402 LSCC WGS tumor CPT0281060006 CPT0281060006.WholeGenome.RP-2158.bam 19746056389 BAM aligned CPTAC3 7b403441-0fe4-430b-b00a-165209c8fdc5 0c4c2e8b819b3611f4d976d499e6b1ff {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor"} -C3L-04402.WGS.T.hg38 C3L-04402 LSCC WGS tumor CPT0281060006 04193e63-80b9-4eeb-862e-6f78b23a3103_wgs_gdc_realn.bam 56543096092 BAM harmonized CPTAC3 eb602344-26fb-4aa6-a33f-82fd9b19b04f d04a1832d39cea7ae1a9eca8397727b9 {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor"} -C3L-04402.WXS.A C3L-04402 LSCC WXS tissue_normal CPT0281070006 CPT0281070006.WholeExome.RP-1303.bam 24820615379 BAM aligned CPTAC3 8b87bc6e-850b-4e37-b459-069a97163374 a3ece565d681913ddd692f2c54ddd619 {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04402.WXS.A.hg38 C3L-04402 LSCC WXS tissue_normal CPT0281070006 7c4c45e0-d336-4263-a591-01257b647e68_wxs_gdc_realn.bam 34246021633 BAM harmonized CPTAC3 6ef9ddf4-fd54-4f21-90d5-8e667a6afece 191991aeb81a1d0cef3fee8cba1d4332 {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04402.WXS.N C3L-04402 LSCC WXS blood_normal CPT0285780002 CPT0285780002.WholeExome.RP-1303.bam 22012058038 BAM aligned CPTAC3 bd612b61-4d52-4e6b-adae-be387cac6614 b9198c7199d8aa542a271c6959c71a0e {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04402.WXS.N.hg38 C3L-04402 LSCC WXS blood_normal CPT0285780002 4dc3a96a-b762-4a23-b6ba-38791790b86b_wxs_gdc_realn.bam 29646121009 BAM harmonized CPTAC3 3fbd9bc9-fa07-4e1f-b885-955ccdc31857 56b68740b2e21c7230921ae157b78654 {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04402.WXS.T C3L-04402 LSCC WXS tumor CPT0281060006 CPT0281060006.WholeExome.RP-1303.bam 21787447379 BAM aligned CPTAC3 3f12f4eb-be0e-4775-a038-3b831f549d6e 5cd3aaa60e67b89f5cf6ca986e34ecd1 {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor"} -C3L-04402.WXS.T.hg38 C3L-04402 LSCC WXS tumor CPT0281060006 04193e63-80b9-4eeb-862e-6f78b23a3103_wxs_gdc_realn.bam 30081180312 BAM harmonized CPTAC3 7037defd-5416-42a8-95b2-15e3a55ec87b 27df9e36161f105dc62a7311e8fcf28b {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor"} -C3L-04404.MethArray.Green.A C3L-04404 LSCC Methylation_Array tissue_normal CPT0284390006 204367490151_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 eddb9743-f69d-4d46-a3ae-fe0ec41f6d37 108dc73448884f028b0b641d6858aced {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.MethArray.Green.T C3L-04404 LSCC Methylation_Array tumor CPT0284380006 204372030015_R03C01_Grn.idat 13677905 IDAT Green NA CPTAC3 29d2e364-010c-4a10-91a3-ce61dae178d1 6ab9e4c8ada801b9315de3e80c01100d {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor"} -C3L-04404.MethArray.Red.A C3L-04404 LSCC Methylation_Array tissue_normal CPT0284390006 204367490151_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 b293851a-3683-4db9-a3d3-5896b43002aa 5ff52fe3db3c372df6670cf3ea9f96b7 {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.MethArray.Red.T C3L-04404 LSCC Methylation_Array tumor CPT0284380006 204372030015_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 1990235a-bf62-49c3-989b-bb707dba1547 ac2f948d214eb19b6efae8afb3baa7df {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor"} -C3L-04404.miRNA-Seq.A.hg38 C3L-04404 LSCC miRNA-Seq tissue_normal CPT0284390009 e1dadd45-c572-4847-bf33-7d89c4d92356_mirnaseq_gdc_realn.bam 306891555 BAM harmonized CPTAC3 b5d0566e-17a1-44be-89a5-afe33cae417a e4a6bc514ce6f8744285f8699beef795 {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.miRNA-Seq.S19_L008_R1.T C3L-04404 LSCC miRNA-Seq tumor CPT0284380009 200224_UNC31-K00269_0267_AHC722BBXY_GTGAAA_S19_L008_R1_001.unaln.bam 217957334 BAM S19_L008_R1 unaligned CPTAC3 f3ce923d-8c3a-4106-9bf3-1a32327e686d 55c9fd4ff7a446847069fd4062f27084 {"aliquot_tag": "ALQ_dea3c926", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04404.miRNA-Seq.S1_L005_R1.A C3L-04404 LSCC miRNA-Seq tissue_normal CPT0284390009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACAGTG_S1_L005_R1_001.unaln.bam 279938526 BAM S1_L005_R1 unaligned CPTAC3 28ab0146-7bc6-4183-aef2-c86422e5f31d 88ed164c185d3a16f056dfed0d6f64d1 {"aliquot_tag": "ALQ_e3c3e096", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.miRNA-Seq.T.hg38 C3L-04404 LSCC miRNA-Seq tumor CPT0284380009 596d776a-ca00-4cf6-9539-1987a7c7f864_mirnaseq_gdc_realn.bam 246656063 BAM harmonized CPTAC3 ba61bc82-85be-4f45-993c-e4266919fd7a e1ba639929e5bd4997243fd68702aceb {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor"} -C3L-04404.RNA-Seq.chimeric.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.chimeric.gdc_realn.bam 31119970 BAM chimeric harmonized CPTAC3 51f1f16a-87aa-4172-8292-dbbdca90aa39 edcef70f9b58fcfa2f6ba616ba56dd2a {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.RNA-Seq.chimeric.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.chimeric.gdc_realn.bam 41979576 BAM chimeric harmonized CPTAC3 efde4973-869b-454f-b69e-d3885e95c5fa ba40a07a63c9eb19d8e64d7fb144519d {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor"} -C3L-04404.RNA-Seq.genomic.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.genomic.gdc_realn.bam 7777204571 BAM genomic harmonized CPTAC3 6fdaedfc-d26b-4086-ae3a-5502c6a84d5f 1163eb50efa5c1049c40094f783641a6 {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.RNA-Seq.genomic.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.genomic.gdc_realn.bam 9326864117 BAM genomic harmonized CPTAC3 de5585ee-e7b3-4219-8ce3-7870b6842e00 8e2ddd5a975d0dd9b2ca6fc6310bf6f8 {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor"} -C3L-04404.RNA-Seq.S3_L001_R1.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R1_001.fastq.gz 4713549564 FASTQ S3_L001_R1 unaligned CPTAC3 eed3326a-8be4-4296-98f0-d7478de78a84 c5a335f915aa9d80eab6ded19a6057c8 {"aliquot_tag": "ALQ_dea3c926", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04404.RNA-Seq.S3_L001_R2.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R2_001.fastq.gz 5261756231 FASTQ S3_L001_R2 unaligned CPTAC3 96ae514b-7148-41d6-8cff-f4586b0080e6 a3fd737b3b49c4eb80868801c3be9a1f {"aliquot_tag": "ALQ_dea3c926", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04404.RNA-Seq.S5_L006_R1.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R1_001.fastq.gz 3898324935 FASTQ S5_L006_R1 unaligned CPTAC3 f077f27d-61bd-40e8-b4d4-996c9b7e63e7 fd2c7c2fb77e5c0285fe1e7867f4ce89 {"aliquot_tag": "ALQ_e3c3e096", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.RNA-Seq.S5_L006_R2.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R2_001.fastq.gz 4164092950 FASTQ S5_L006_R2 unaligned CPTAC3 b553992d-4327-4ea9-8af6-adb773e2eada d64877d0505d2b726eac1316770c1873 {"aliquot_tag": "ALQ_e3c3e096", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.RNA-Seq.transcriptome.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.transcriptome.gdc_realn.bam 9602489321 BAM transcriptome harmonized CPTAC3 0570f15f-baca-42e9-be10-9113e17f5e4c 11d28a15e398b52fb9c48424c196955f {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.RNA-Seq.transcriptome.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.transcriptome.gdc_realn.bam 12638558456 BAM transcriptome harmonized CPTAC3 2e38b381-2c6d-4a1c-8135-4e1c40c45c8c 22e58a1017ac82415aa4886a3c20ba78 {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor"} -C3L-04404.WGS.N C3L-04404 LSCC WGS blood_normal CPT0285800002 CPT0285800002.WholeGenome.RP-2158.bam 29646130722 BAM aligned CPTAC3 1082fb0c-b52b-474f-ae57-cf48bb479ffa 1ed848562c50f1875488da3b488c2eec {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal"} -C3L-04404.WGS.N.hg38 C3L-04404 LSCC WGS blood_normal CPT0285800002 c2b9b16d-31c2-4824-bea8-127c4e3184ad_wgs_gdc_realn.bam 91194189527 BAM harmonized CPTAC3 f31033d4-9f98-4c28-abec-417846bf4ec5 6a8574cfd05ffbf686d704a63d575143 {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal"} -C3L-04404.WGS.T C3L-04404 LSCC WGS tumor CPT0284380006 CPT0284380006.WholeGenome.RP-2158.bam 24868549930 BAM aligned CPTAC3 9f5feb9e-9e84-49f0-9731-b1d495e8ebca 427ee249a2fb3d17b249b076b781329a {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor"} -C3L-04404.WGS.T.hg38 C3L-04404 LSCC WGS tumor CPT0284380006 118c8acc-4317-4f49-8349-d5cb8d9bf837_wgs_gdc_realn.bam 76839276981 BAM harmonized CPTAC3 8aff48b1-a9d7-4250-86d9-f8e23f58b1a6 b3a5d37f18b100ba6311ba11b60eb0e8 {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor"} -C3L-04404.WXS.A C3L-04404 LSCC WXS tissue_normal CPT0284390006 CPT0284390006.WholeExome.RP-1303.bam 39490557557 BAM aligned CPTAC3 b5ac2615-5340-49b5-b50f-2b3f7b10c70c c0a96edbf05110833e036ef09015ce66 {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.WXS.A.hg38 C3L-04404 LSCC WXS tissue_normal CPT0284390006 002650f3-c375-4f1d-9b0e-caef0b3a4378_wxs_gdc_realn.bam 55115039412 BAM harmonized CPTAC3 fc44c2f7-1006-4cb7-aea6-e3341b9e8a26 7aa30a88801a5c354d4836742ca6a0d6 {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04404.WXS.N C3L-04404 LSCC WXS blood_normal CPT0285800002 CPT0285800002.WholeExome.RP-1303.bam 29846450687 BAM aligned CPTAC3 3220f985-596c-4bb9-aace-a4030293b220 600df09cd21f6ce1b18f735fb455b4d5 {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal"} -C3L-04404.WXS.N.hg38 C3L-04404 LSCC WXS blood_normal CPT0285800002 c2b9b16d-31c2-4824-bea8-127c4e3184ad_wxs_gdc_realn.bam 40905280928 BAM harmonized CPTAC3 3291b1f3-01c0-4526-8f39-a68530a110df 1bb613a2f19f70f11f7c1f8e905972d8 {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal"} -C3L-04404.WXS.T C3L-04404 LSCC WXS tumor CPT0284380006 CPT0284380006.WholeExome.RP-1303.bam 23050141330 BAM aligned CPTAC3 8fa124c3-854d-40ab-9f47-108a11c1bf80 2dba0db3bec64a40c27b653663830999 {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor"} -C3L-04404.WXS.T.hg38 C3L-04404 LSCC WXS tumor CPT0284380006 118c8acc-4317-4f49-8349-d5cb8d9bf837_wxs_gdc_realn.bam 32274167687 BAM harmonized CPTAC3 dd520ae8-4930-429f-a890-249989806161 584787c3e5e7b11d507ed7fbc59841ba {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor"} -C3L-04408.MethArray.Green.A C3L-04408 LSCC Methylation_Array tissue_normal CPT0284610006 204367490090_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3a0cd6be-00e3-415c-bf70-a350fbb30f22 2d74eca53a51ab95415d0b39d83d4c3f {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.MethArray.Green.T C3L-04408 LSCC Methylation_Array tumor CPT0284600006 204367490061_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c043e633-53f0-4069-9a16-476562fc9207 c48ac23e47f04a40c94bd726329e8aa0 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor"} -C3L-04408.MethArray.Red.A C3L-04408 LSCC Methylation_Array tissue_normal CPT0284610006 204367490090_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 356c2837-6fa6-45e5-9d7d-881bf1dd5f25 08739130e2baa2a8de93f156024d4eb2 {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.MethArray.Red.T C3L-04408 LSCC Methylation_Array tumor CPT0284600006 204367490061_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 ed72239b-a05e-4a80-b6c4-8f30e3e92d19 af05462aea6f616eac78b8671c72fe2c {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor"} -C3L-04408.miRNA-Seq.A.hg38 C3L-04408 LSCC miRNA-Seq tissue_normal CPT0284610013 2598a129-cb28-4946-99e5-f59b8d080d3a_mirnaseq_gdc_realn.bam 221556584 BAM harmonized CPTAC3 90cee161-5d78-468a-86e3-2c2af8b4ab5d 272253272ba822f1a004281a5824905d {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.miRNA-Seq.S21_L007_R1.A C3L-04408 LSCC miRNA-Seq tissue_normal CPT0284610013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTTTCG_S21_L007_R1_001.unaln.bam 200886341 BAM S21_L007_R1 unaligned CPTAC3 d071baf6-4ecd-4322-8cdc-6b9b9ae0f2ff d2b30c4c1075a66750213c14efb2e182 {"aliquot_tag": "ALQ_7ab0e2bb", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.miRNA-Seq.S35_L007_R1.T C3L-04408 LSCC miRNA-Seq tumor CPT0284600009 200224_UNC31-K00269_0267_AHC722BBXY_CATTTT_S35_L007_R1_001.unaln.bam 204358869 BAM S35_L007_R1 unaligned CPTAC3 5fc43bad-07fa-4483-934e-9906d0665f66 88d2143a56e32ae466d98d50fa94ab08 {"aliquot_tag": "ALQ_be1e1354", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04408.miRNA-Seq.T.hg38 C3L-04408 LSCC miRNA-Seq tumor CPT0284600009 15c01b50-ce5d-4315-9a86-3884f964d2eb_mirnaseq_gdc_realn.bam 226520036 BAM harmonized CPTAC3 c9f6b212-902c-4e50-8e9f-b0d80d6cdb9e b24071f2dba06a1ac4ec42c599204554 {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor"} -C3L-04408.RNA-Seq.chimeric.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.chimeric.gdc_realn.bam 71272688 BAM chimeric harmonized CPTAC3 619d7232-6cc8-4f6f-a1d2-40a771bfb5b7 1b2a644c1e5fd0ec4bf67288b2995f37 {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.RNA-Seq.chimeric.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.chimeric.gdc_realn.bam 26026707 BAM chimeric harmonized CPTAC3 22f39a83-9b14-463e-9463-c6dc8e11a7b7 01271b48cff523bb0366dd9179377158 {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor"} -C3L-04408.RNA-Seq.genomic.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.genomic.gdc_realn.bam 7226299403 BAM genomic harmonized CPTAC3 cce83df8-f247-402c-b39d-4fad49fd9fa8 09d64f9a538f1baf8ab14ea60a2d27e3 {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.RNA-Seq.genomic.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.genomic.gdc_realn.bam 7046476254 BAM genomic harmonized CPTAC3 cf410b2a-c419-40d2-aeda-e0785b05e32a ef6a94b3ea4bb4c411507b423acfd06d {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor"} -C3L-04408.RNA-Seq.S23_L006_R1.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R1_001.fastq.gz 3367240024 FASTQ S23_L006_R1 unaligned CPTAC3 fe4116e1-39c9-4eda-a971-88e61d168499 5e549fbc508b5a666fed6896bfda77ce {"aliquot_tag": "ALQ_7ab0e2bb", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.RNA-Seq.S23_L006_R2.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R2_001.fastq.gz 3838125023 FASTQ S23_L006_R2 unaligned CPTAC3 8834d01d-64c6-41be-ab13-f3228b045b9b cb56511816ab86afa60ffc509688427e {"aliquot_tag": "ALQ_7ab0e2bb", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.RNA-Seq.S3_L001_R1.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R1_001.fastq.gz 3126891913 FASTQ S3_L001_R1 unaligned CPTAC3 6db37f19-2cf1-4804-9ea9-3755f15d45c6 c4e275678dd1b8b9934ae8d300c5b88f {"aliquot_tag": "ALQ_be1e1354", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04408.RNA-Seq.S3_L001_R2.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R2_001.fastq.gz 3477799413 FASTQ S3_L001_R2 unaligned CPTAC3 b79cba98-e659-47ce-b313-15389cf4dea3 e0117ef134b776be3f2626a1ac852bb7 {"aliquot_tag": "ALQ_be1e1354", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04408.RNA-Seq.transcriptome.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.transcriptome.gdc_realn.bam 8655801560 BAM transcriptome harmonized CPTAC3 f08c7c2e-5994-4b09-ac06-967cb8e65fc1 e61074173b233ff53de608e4c51975ac {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.RNA-Seq.transcriptome.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.transcriptome.gdc_realn.bam 8568964253 BAM transcriptome harmonized CPTAC3 6b0f4c57-3c21-4b4f-ad07-2b6be55b5994 0b05df38986d0ba8783001afe0faa57c {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor"} -C3L-04408.WGS.N C3L-04408 LSCC WGS blood_normal CPT0285820002 CPT0285820002.WholeGenome.RP-2158.bam 26047707163 BAM aligned CPTAC3 6915800c-5570-4161-8495-4176e117d84f a1135bd38b44c234c49e4ffd8e7b35c7 {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal"} -C3L-04408.WGS.N.hg38 C3L-04408 LSCC WGS blood_normal CPT0285820002 f74707b1-70dd-42ca-90f2-acae0b761eed_wgs_gdc_realn.bam 77045791474 BAM harmonized CPTAC3 ab0d9bba-a79f-42d5-b891-fd83ea48ee87 89338fc379d07770615e7484f362b491 {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal"} -C3L-04408.WGS.T C3L-04408 LSCC WGS tumor CPT0284600006 CPT0284600006.WholeGenome.RP-2158.bam 22001221086 BAM aligned CPTAC3 6ba01002-54df-43c3-a1bd-d10bea94292f 1fa6bac07c74cdfc7ea71117b408b11d {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor"} -C3L-04408.WGS.T.hg38 C3L-04408 LSCC WGS tumor CPT0284600006 d8122677-3787-48ef-9182-08b6a6a0d32a_wgs_gdc_realn.bam 63055932486 BAM harmonized CPTAC3 1193c011-222b-4e7c-bc97-30d6a39d344b ca9b9d11e831685f4095596ff7a2ea95 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor"} -C3L-04408.WXS.A C3L-04408 LSCC WXS tissue_normal CPT0284610006 CPT0284610006.WholeExome.RP-1303.bam 26825997271 BAM aligned CPTAC3 7ae40560-cbee-4ea7-9c2b-57ede09cd5d2 02db2597b52215ec8d97d2bed127ee8e {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.WXS.A.hg38 C3L-04408 LSCC WXS tissue_normal CPT0284610006 ea89e674-3df1-494b-be3b-5a1551c4aba8_wxs_gdc_realn.bam 37952990905 BAM harmonized CPTAC3 f321b4b8-41de-4595-a014-49178e570723 da56459f52f9e38d5493a6ce52eb106a {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04408.WXS.N C3L-04408 LSCC WXS blood_normal CPT0285820002 CPT0285820002.WholeExome.RP-1303.bam 39120091683 BAM aligned CPTAC3 f6defcc6-d73a-4937-9e96-bd49e7bdde4f e1b80ea7515c3cd110ea6aeb257d5c9e {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal"} -C3L-04408.WXS.N.hg38 C3L-04408 LSCC WXS blood_normal CPT0285820002 f74707b1-70dd-42ca-90f2-acae0b761eed_wxs_gdc_realn.bam 52321917355 BAM harmonized CPTAC3 ebca201a-de02-4e3c-af29-ee8ab15f4ff0 67cbfe37e7b8dc7a7d4a99283a71358f {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal"} -C3L-04408.WXS.T C3L-04408 LSCC WXS tumor CPT0284600006 CPT0284600006.WholeExome.RP-1303.bam 25782794076 BAM aligned CPTAC3 7d40169a-8341-4ddb-8632-8915b9653d70 e3f936302444f57db9068680b26263b2 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor"} -C3L-04408.WXS.T.hg38 C3L-04408 LSCC WXS tumor CPT0284600006 d8122677-3787-48ef-9182-08b6a6a0d32a_wxs_gdc_realn.bam 35361806218 BAM harmonized CPTAC3 dad6c0ee-b61e-4cc2-9c54-64ff0095511b 0948496b35cb1d7e9e44caa88b6ba7e2 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor"} -C3L-04409.MethArray.Green.A C3L-04409 LSCC Methylation_Array tissue_normal CPT0284340006 204367490061_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c07d77c7-d85b-4a9c-980b-2e231a4a3996 402e9fa628a005fdfdf5b5430fdb3e80 {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04409.MethArray.Green.T C3L-04409 LSCC Methylation_Array tumor CPT0284320006 204372030022_R03C01_Grn.idat 13677905 IDAT Green NA CPTAC3 76b3dc2e-4081-4044-8af2-9c4c9bd6cc7a 01419033b5aef7ed725e1dddad908d91 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor"} -C3L-04409.MethArray.Red.A C3L-04409 LSCC Methylation_Array tissue_normal CPT0284340006 204367490061_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 a6c27b60-9076-4a60-85d3-8e9a6193f7fc 547fffbf2cd81b696fc81539b1da6e0c {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04409.MethArray.Red.T C3L-04409 LSCC Methylation_Array tumor CPT0284320006 204372030022_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 9320403e-fdd2-4ac8-9b9f-d9407fc414d5 07965e01f9f9bf12de42bd2d55aa9409 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor"} -C3L-04409.miRNA-Seq.S18_L008_R1.T C3L-04409 LSCC miRNA-Seq tumor CPT0284320009 200224_UNC31-K00269_0267_AHC722BBXY_GTCCGC_S18_L008_R1_001.unaln.bam 223684758 BAM S18_L008_R1 unaligned CPTAC3 89417943-a8b8-4561-a068-a52fb830a4d3 0c623dba5577e0b0339a3b34dc106989 {"aliquot_tag": "ALQ_9413d187", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04409.miRNA-Seq.T.hg38 C3L-04409 LSCC miRNA-Seq tumor CPT0284320009 b5e7d0a7-3e64-4f63-bbf3-3dc5eb2dce2e_mirnaseq_gdc_realn.bam 249007952 BAM harmonized CPTAC3 0560f4e7-9dfa-4ae1-8bcf-90b51101f9e8 652df742b63cc40a317a67099e1a8d20 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor"} -C3L-04409.RNA-Seq.chimeric.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.chimeric.gdc_realn.bam 34456460 BAM chimeric harmonized CPTAC3 1b6d9cd1-a433-4262-b54c-06e70d545433 b3bbde5163783040469690e4dbb5ad90 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor"} -C3L-04409.RNA-Seq.genomic.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.genomic.gdc_realn.bam 8377548131 BAM genomic harmonized CPTAC3 1e0939aa-ab8e-4633-a78f-f82fbb7cfc47 176cc0dad305611a6d80eee41f5e3582 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor"} -C3L-04409.RNA-Seq.S2_L001_R1.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 3768250785 FASTQ S2_L001_R1 unaligned CPTAC3 3cdd6265-3ac5-47f8-b323-dc6bb6b12930 a65a40a7160f2eba343bb74a6482a0f4 {"aliquot_tag": "ALQ_9413d187", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04409.RNA-Seq.S2_L001_R2.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 4267899311 FASTQ S2_L001_R2 unaligned CPTAC3 17b4edc1-eb6b-459d-8bbb-0763f336df32 42ac9f35bb977b5f146678cc3ac4d7b6 {"aliquot_tag": "ALQ_9413d187", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04409.RNA-Seq.transcriptome.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.transcriptome.gdc_realn.bam 9615160014 BAM transcriptome harmonized CPTAC3 28bffd85-9a2b-4d3b-97a0-9560eccedf7b f02d420e2be698aac7e5af969f172ab2 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor"} -C3L-04409.WGS.N C3L-04409 LSCC WGS blood_normal CPT0285790002 CPT0285790002.WholeGenome.RP-2158.bam 29506415090 BAM aligned CPTAC3 bfceb32c-10f6-4bd6-b8f3-b6bcddc36f98 2cbc1361be27b884822fd70931e14550 {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04409.WGS.N.hg38 C3L-04409 LSCC WGS blood_normal CPT0285790002 0cbade83-4b62-4a62-8cff-6a43e26ec405_wgs_gdc_realn.bam 87643866032 BAM harmonized CPTAC3 fca9b34d-230b-4cea-8541-c74075b3c378 97842bd950844a855c8065db21e1f37b {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04409.WGS.T C3L-04409 LSCC WGS tumor CPT0284320006 CPT0284320006.WholeGenome.RP-2158.bam 23961113305 BAM aligned CPTAC3 b524a883-8206-4bf5-a4c6-b7b2a25771b6 0c519ec227c50c1b02154744d42df297 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor"} -C3L-04409.WGS.T.hg38 C3L-04409 LSCC WGS tumor CPT0284320006 0355f102-39d4-45dd-b8fe-5882fa1b3f65_wgs_gdc_realn.bam 69407582494 BAM harmonized CPTAC3 c9198356-c57b-442b-ae1c-246bb941236a 71c7feeb8cbc7f3fe6b758e068ec30bd {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor"} -C3L-04409.WXS.A C3L-04409 LSCC WXS tissue_normal CPT0284340006 CPT0284340006.WholeExome.RP-1303.bam 37663217851 BAM aligned CPTAC3 de92e6db-5aa2-4751-a5c9-2baa6a986359 29a0bec5fe29c455939905a3a0882710 {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04409.WXS.A.hg38 C3L-04409 LSCC WXS tissue_normal CPT0284340006 1f97f93b-b5bc-4249-b55c-0559b4974dbc_wxs_gdc_realn.bam 53024970038 BAM harmonized CPTAC3 ad952fc2-a5cf-46ec-92a4-efea628b8488 a302bd7a747c756b361044f9b8db9536 {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04409.WXS.N C3L-04409 LSCC WXS blood_normal CPT0285790002 CPT0285790002.WholeExome.RP-1303.bam 27744960066 BAM aligned CPTAC3 859cae9d-2d75-4e89-bc77-52e892bf06ec cde8f4f88ec49cf798aa59262e5166a3 {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04409.WXS.N.hg38 C3L-04409 LSCC WXS blood_normal CPT0285790002 0cbade83-4b62-4a62-8cff-6a43e26ec405_wxs_gdc_realn.bam 36885042855 BAM harmonized CPTAC3 dc69714c-7f06-44c9-8b97-e3c81750e98c de29a57b5538fed6fe66227f3783030b {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04409.WXS.T C3L-04409 LSCC WXS tumor CPT0284320006 CPT0284320006.WholeExome.RP-1303.bam 18696521735 BAM aligned CPTAC3 fff4aaab-7147-469c-97ee-a9c8b85f9ccb 82f4464a7ae1107277acf2b8950f1b73 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor"} -C3L-04409.WXS.T.hg38 C3L-04409 LSCC WXS tumor CPT0284320006 0355f102-39d4-45dd-b8fe-5882fa1b3f65_wxs_gdc_realn.bam 26320712167 BAM harmonized CPTAC3 562c51ac-5809-49c1-bc11-c82c84d31f34 204240d50cdb9ea50eed49a4a3df4647 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor"} -C3L-04410.MethArray.Green.A C3L-04410 LSCC Methylation_Array tissue_normal CPT0284490006 204372030074_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 411fece2-88ee-4723-9d4a-87595f754504 69c7e7926f710a6840130a6d728a1f4b {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.MethArray.Green.T C3L-04410 LSCC Methylation_Array tumor CPT0284470006 204372030106_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b7597f61-8018-4b3d-a18e-9e17da91d3ea 941ea0d88106a91cbd219ec11feaa013 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor"} -C3L-04410.MethArray.Red.A C3L-04410 LSCC Methylation_Array tissue_normal CPT0284490006 204372030074_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 e7d31600-486e-4f5f-83ac-aa9ffdff0aac c1e17505ac0f0a8d4716ed555100201e {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.MethArray.Red.T C3L-04410 LSCC Methylation_Array tumor CPT0284470006 204372030106_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 eaa55eba-65bd-4c14-8ccf-18a772bb3ff9 5bf83a32a35ba2f52737caeb4d742ca3 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor"} -C3L-04410.miRNA-Seq.A.hg38 C3L-04410 LSCC miRNA-Seq tissue_normal CPT0284490009 370bc377-8746-4164-b503-d16f12ba80ad_mirnaseq_gdc_realn.bam 334311950 BAM harmonized CPTAC3 4ba98c9a-6d26-4478-91fc-d357877ef08b f8c990779599816e9bb129a27725d467 {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.miRNA-Seq.S14_L005_R1.A C3L-04410 LSCC miRNA-Seq tissue_normal CPT0284490009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GCCAAT_S14_L005_R1_001.unaln.bam 307675827 BAM S14_L005_R1 unaligned CPTAC3 5923c826-fa42-483a-841b-9ecb3dc59672 05ed413ba2b27e2186371cc17897ba4d {"aliquot_tag": "ALQ_fec6d02e", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.miRNA-Seq.S20_L008_R1.T C3L-04410 LSCC miRNA-Seq tumor CPT0284470009 200224_UNC31-K00269_0267_AHC722BBXY_GTGGCC_S20_L008_R1_001.unaln.bam 245614612 BAM S20_L008_R1 unaligned CPTAC3 022be749-6937-4adb-932c-93ee22c63721 81a317f3547d8e648b78361e648c6fe9 {"aliquot_tag": "ALQ_41f66e4f", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04410.miRNA-Seq.T.hg38 C3L-04410 LSCC miRNA-Seq tumor CPT0284470009 139d98af-0cae-4e91-be1a-8a838ea630ba_mirnaseq_gdc_realn.bam 270871650 BAM harmonized CPTAC3 1247e480-aca8-4f5c-8ea6-ff2e3cef4d41 1c61974be74cf1a6bebca097aa9b9221 {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor"} -C3L-04410.RNA-Seq.chimeric.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.chimeric.gdc_realn.bam 29096056 BAM chimeric harmonized CPTAC3 8b1b92a7-fdee-4bd9-a960-854bce4672a9 674f12e466d0dccc73d7250f039727ad {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.RNA-Seq.chimeric.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.chimeric.gdc_realn.bam 29950070 BAM chimeric harmonized CPTAC3 e59b0a99-0fce-40fd-adcd-95d2c79e1bf2 be8bf4802ef450ab0fdd1ae33f11ca5d {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor"} -C3L-04410.RNA-Seq.genomic.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.genomic.gdc_realn.bam 7632568158 BAM genomic harmonized CPTAC3 4c03ff67-8bfc-46d8-a8b2-fce20f0bd5c8 4c2036d4b4eb48e8bc5859870d20137a {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.RNA-Seq.genomic.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.genomic.gdc_realn.bam 8061463669 BAM genomic harmonized CPTAC3 5ff1fddc-004b-4160-9448-f359b91d97eb 426aeca5995775b0662e9d4eab80f1df {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor"} -C3L-04410.RNA-Seq.S4_L001_R1.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R1_001.fastq.gz 3847762279 FASTQ S4_L001_R1 unaligned CPTAC3 5c562fe8-ab90-4894-a916-70639384266b 7ada3faf3d252e39c8c509eff8442cc5 {"aliquot_tag": "ALQ_41f66e4f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04410.RNA-Seq.S4_L001_R2.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R2_001.fastq.gz 4322814786 FASTQ S4_L001_R2 unaligned CPTAC3 b1563fb9-5b45-412d-aa9d-f8bdae672abe 9dd7d68f638a79008eb8e080c7ed16bd {"aliquot_tag": "ALQ_41f66e4f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04410.RNA-Seq.S6_L006_R1.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R1_001.fastq.gz 3910935753 FASTQ S6_L006_R1 unaligned CPTAC3 19640734-3489-487d-83cd-b266bb249147 85a10421c1219b940fef76de4516f8a8 {"aliquot_tag": "ALQ_fec6d02e", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.RNA-Seq.S6_L006_R2.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R2_001.fastq.gz 4194200637 FASTQ S6_L006_R2 unaligned CPTAC3 e482f4fd-5cca-4c2a-828f-c154e9f64c4a 5a52f7f9b313f8415188dd3f4f131a59 {"aliquot_tag": "ALQ_fec6d02e", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.RNA-Seq.transcriptome.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.transcriptome.gdc_realn.bam 10544509433 BAM transcriptome harmonized CPTAC3 854bef7f-9782-462f-a065-4f0f67d91902 7101bfebdb716194fe7327375bd2fc6d {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.RNA-Seq.transcriptome.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.transcriptome.gdc_realn.bam 10169294799 BAM transcriptome harmonized CPTAC3 78896108-3ad4-4417-ae1b-197210b518f3 a23ee878cad786ea191934571b068f54 {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor"} -C3L-04410.WGS.N C3L-04410 LSCC WGS blood_normal CPT0285830002 CPT0285830002.WholeGenome.RP-2158.bam 24297696890 BAM aligned CPTAC3 9bec8282-6380-41e9-922e-2c466b1d59a5 89cecf569115fae9399d1612fe0272ec {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04410.WGS.N.hg38 C3L-04410 LSCC WGS blood_normal CPT0285830002 ddaede42-d686-4b86-8706-ec0d5aa1165d_wgs_gdc_realn.bam 74503866000 BAM harmonized CPTAC3 51138aec-609f-4285-95d2-8d47f3b7b906 cd3dc6abe7a440f0d6ee338beebacfca {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04410.WGS.T C3L-04410 LSCC WGS tumor CPT0284470006 CPT0284470006.WholeGenome.RP-2158.bam 23081113790 BAM aligned CPTAC3 4ca863a2-d2c0-4a73-b135-ba3674283585 0cef71fb0108b898e07a3b44fcf1e4a7 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor"} -C3L-04410.WGS.T.hg38 C3L-04410 LSCC WGS tumor CPT0284470006 32552864-05a8-479f-a894-db75882384c1_wgs_gdc_realn.bam 68395924949 BAM harmonized CPTAC3 48f97379-47bf-487c-b22a-4881b9570c1d 08354f828179e264287d7780ed8a2067 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor"} -C3L-04410.WXS.A C3L-04410 LSCC WXS tissue_normal CPT0284490006 CPT0284490006.WholeExome.RP-1303.bam 23739255633 BAM aligned CPTAC3 4ebd50e7-e5a6-47d1-afec-46b8821ba6b0 d7283e9b25f3f7b09cdc10f72dfa72cc {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.WXS.A.hg38 C3L-04410 LSCC WXS tissue_normal CPT0284490006 2f54a0f9-f8c5-42e0-a85a-566cc62c8234_wxs_gdc_realn.bam 33705773724 BAM harmonized CPTAC3 636237a2-94c0-408e-bf74-2a18e1d9b9fb c060892de20dc9b1cb662730d161b968 {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04410.WXS.N C3L-04410 LSCC WXS blood_normal CPT0285830002 CPT0285830002.WholeExome.RP-1303.bam 21112562710 BAM aligned CPTAC3 fc40cf54-dacf-452a-9d47-9bf283794f06 0c14ca0f16f3cb79f307af4f19fa074b {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04410.WXS.N.hg38 C3L-04410 LSCC WXS blood_normal CPT0285830002 ddaede42-d686-4b86-8706-ec0d5aa1165d_wxs_gdc_realn.bam 28239502560 BAM harmonized CPTAC3 3227bf61-7ac0-446e-b650-00b7878c8b55 f5b516aedd1ef0589e351aec424ddb88 {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04410.WXS.T C3L-04410 LSCC WXS tumor CPT0284470006 CPT0284470006.WholeExome.RP-1303.bam 20622011364 BAM aligned CPTAC3 3be795d8-afcf-4549-b2b7-243d1053051d 816c26ed6ca82cf2326b93a9a4a0b209 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor"} -C3L-04410.WXS.T.hg38 C3L-04410 LSCC WXS tumor CPT0284470006 32552864-05a8-479f-a894-db75882384c1_wxs_gdc_realn.bam 28406652022 BAM harmonized CPTAC3 d2ed06cc-9c01-4d84-a717-0cfe2c31f8ee f8453db4a2a2f8d5ac15ff025228a140 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor"} -C3L-04473.MethArray.Green.T C3L-04473 PDA Methylation_Array tumor CPT0238710007 203561450073_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 11f79671-9b2f-4bdb-bde8-b1debfbb5ead 0773d26ee08ff54de31e306771f6fd09 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04473.MethArray.Red.T C3L-04473 PDA Methylation_Array tumor CPT0238710007 203561450073_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 4c8a14b6-c02a-4eb7-b3d8-a841b28c35df dd4687efd04dfad1686184a899826c49 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04473.miRNA-Seq.S43_L005_R1.T C3L-04473 PDA miRNA-Seq tumor CPT0238710010 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGGCC_S43_L005_R1_001.unaln.bam 188659787 BAM S43_L005_R1 unaligned CPTAC3 049db0b3-c57d-4212-bf6e-958143c523d3 9367a576d8f4e9f8d9218f951f47a165 {"aliquot_tag": "ALQ_b22f1686", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04473.miRNA-Seq.T.hg38 C3L-04473 PDA miRNA-Seq tumor CPT0238710010 971bafab-60f2-47d6-b67c-2ccbe8b85d9e_mirnaseq_gdc_realn.bam 214125282 BAM harmonized CPTAC3 42804d2e-1761-4fa6-a0e2-8f66ee8d2625 0fe0bbc4007905531b6cf7d30ac8e00c {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor"} -C3L-04473.RNA-Seq.chimeric.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.chimeric.gdc_realn.bam 31856615 BAM chimeric harmonized CPTAC3 08a4dcb2-7514-42a9-b214-43f707107338 dd6f0c3b9ad9ab15e8e3bde8b0614007 {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor"} -C3L-04473.RNA-Seq.genomic.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.genomic.gdc_realn.bam 7728975687 BAM genomic harmonized CPTAC3 31df5983-cc2a-46a1-aa6c-53a330985c3b 7cf11bca9b59d5826ef6611ca6b70a9b {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor"} -C3L-04473.RNA-Seq.S15_L004_R1.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R1_001.fastq.gz 3636785373 FASTQ S15_L004_R1 unaligned CPTAC3 9f4306d1-39ce-420f-82b3-c7032d285625 b2489131a9f67719b2b320f0435f95e2 {"aliquot_tag": "ALQ_b22f1686", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04473.RNA-Seq.S15_L004_R2.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R2_001.fastq.gz 3934885118 FASTQ S15_L004_R2 unaligned CPTAC3 a4cc8660-e78b-4c32-ac99-6cc2baa67b6d e5ca33a8ccc869bb51ec3924965a2f9f {"aliquot_tag": "ALQ_b22f1686", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04473.RNA-Seq.transcriptome.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.transcriptome.gdc_realn.bam 9806096797 BAM transcriptome harmonized CPTAC3 ea34b8d7-c055-48b1-b6cd-96f83f6f001a bf8824510e3be1803ac4cc4133001342 {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor"} -C3L-04473.Targeted.T C3L-04473 PDA Targeted_Sequencing tumor CPT0238710007 CPT0238710007.CustomSelection.RP-1303.PDO-18786.bam 5077344682 BAM aligned CPTAC3 c3c6b717-5346-43c1-a3f2-fcf963573244 1317744946c8aaca99a62341014ca288 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04473.Targeted.T.hg38 C3L-04473 PDA Targeted_Sequencing tumor CPT0238710007 3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_targetedsequencing_gdc_realn.bam 7033845839 BAM harmonized CPTAC3 fd8e0d5c-cd3c-4a7e-a030-2937c386b81e ef7ad57cb57271de28d648ff8d86226e {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04473.WGS.N C3L-04473 PDA WGS blood_normal CPT0238750002 CPT0238750002.WholeGenome.RP-1303.bam 67068129016 BAM aligned CPTAC3 36b57ba8-c127-4755-b320-d92c794100d5 faba75f40446774e1545648627af5b5b {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04473.WGS.N.hg38 C3L-04473 PDA WGS blood_normal CPT0238750002 04647a29-ea3a-414e-9087-cbc7da3dc358_wgs_gdc_realn.bam 99432240175 BAM harmonized CPTAC3 1b7cb28b-6f79-412d-bfb2-a51570017a54 773d41fe135b12f2b63fbfcc40f6baae {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04473.WGS.T C3L-04473 PDA WGS tumor CPT0238710007 CPT0238710007.WholeGenome.RP-1303.bam 75174666342 BAM aligned CPTAC3 e2c532c1-eb4c-4581-8941-be59c258164b fae22f98036619658b79c061ec18703d {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04473.WGS.T.hg38 C3L-04473 PDA WGS tumor CPT0238710007 3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_wgs_gdc_realn.bam 108219075922 BAM harmonized CPTAC3 ffb2eec6-0b15-452c-b504-90f3899edb47 d63c77f7058f818e05c32d5d6b49541f {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04473.WXS.N C3L-04473 PDA WXS blood_normal CPT0238750002 CPT0238750002.WholeExome.RP-1303.bam 28519606351 BAM aligned CPTAC3 8ba82d52-fe94-476f-9a33-10d058b1104f 5af6d320e129255559e71cd28a654519 {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04473.WXS.N.hg38 C3L-04473 PDA WXS blood_normal CPT0238750002 04647a29-ea3a-414e-9087-cbc7da3dc358_wxs_gdc_realn.bam 39718257056 BAM harmonized CPTAC3 1439785e-0e61-46a2-af71-d867ce04088e 3dcbf8603f7f1c1123319a48fb80e747 {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04473.WXS.T C3L-04473 PDA WXS tumor CPT0238710007 CPT0238710007.WholeExome.RP-1303.bam 48884425817 BAM aligned CPTAC3 69c86247-b65f-4d0d-975e-46d4c5eabba9 a8d4d64fe8cebdedeba6fd45512c5ba6 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04473.WXS.T.hg38 C3L-04473 PDA WXS tumor CPT0238710007 3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_wxs_gdc_realn.bam 67866411308 BAM harmonized CPTAC3 1573766c-77f8-4956-97d8-bf950f54b631 2f260b322d3b68a025ba9642a4e510f7 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor"} -C3L-04475.MethArray.Green.A C3L-04475 PDA Methylation_Array tissue_normal CPT0248320006 203561450008_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 099fb4cb-e30f-468a-ab0e-ef240f9e0be7 5bf32258a457bf709291a6e78cb216ee {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.MethArray.Green.T C3L-04475 PDA Methylation_Array tumor CPT0238820008 203561620072_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dce8220b-1674-491b-8817-dbc59aaf42f1 3d9e4ccb42d8e2421e13e58dd7b41e5a {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04475.MethArray.Red.A C3L-04475 PDA Methylation_Array tissue_normal CPT0248320006 203561450008_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 39b45b51-6e8f-4fa6-8da8-39d06104678a 9a382634ab707f18289382f951a7c04f {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.MethArray.Red.T C3L-04475 PDA Methylation_Array tumor CPT0238820008 203561620072_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3d288890-ffc9-4149-af54-2b08d7241a28 82634928af30c5a525eedfe139f6b6c6 {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04475.miRNA-Seq.A.hg38 C3L-04475 PDA miRNA-Seq tissue_normal CPT0248320009 c0c0a07e-f00f-426f-a250-7d13537f358f_mirnaseq_gdc_realn.bam 215481389 BAM harmonized CPTAC3 7bc262a2-033f-4198-9086-ad454ee34b34 ef15894d279aaef9016753550d1050d2 {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.miRNA-Seq.S27_L003_R1.A C3L-04475 PDA miRNA-Seq tissue_normal CPT0248320009 190813_UNC32-K00270_0196_AH5MCWBBXY_TATAAT_S27_L003_R1_001.unaln.bam 188082455 BAM S27_L003_R1 unaligned CPTAC3 91a1403d-29ff-44c6-8f23-22c22c7432a2 6381fede1ef6906be76c1d1c4af95243 {"aliquot_tag": "ALQ_41caebc", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.miRNA-Seq.S44_L005_R1.T C3L-04475 PDA miRNA-Seq tumor CPT0238820011 190712_UNC32-K00270_0192_BH7HL3BBXY_GTTTCG_S44_L005_R1_001.unaln.bam 212888643 BAM S44_L005_R1 unaligned CPTAC3 c11207da-f434-44b6-9e42-c197e37e13b5 572ef0eff229acb57176eceeca205936 {"aliquot_tag": "ALQ_73deee15", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04475.miRNA-Seq.T.hg38 C3L-04475 PDA miRNA-Seq tumor CPT0238820011 6a3a5e69-3b24-439e-9603-c0e24c7736ea_mirnaseq_gdc_realn.bam 248005318 BAM harmonized CPTAC3 7781ac53-e536-457e-9955-6d428ee7c487 a589d053033038d9c4ba3b171d026011 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor"} -C3L-04475.RNA-Seq.chimeric.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.chimeric.gdc_realn.bam 40259738 BAM chimeric harmonized CPTAC3 63afd3d7-b70f-417a-a893-0ed7177b18fe 93c8f5bc9f73416834741958d55430d2 {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.RNA-Seq.chimeric.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.chimeric.gdc_realn.bam 33106792 BAM chimeric harmonized CPTAC3 f1d8c638-c538-4de9-98ea-08a66b35bab0 a7856e22a38d0d641335aee3d1c8c657 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor"} -C3L-04475.RNA-Seq.genomic.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.genomic.gdc_realn.bam 8393458748 BAM genomic harmonized CPTAC3 4a959573-325a-4240-bf33-5dced950d1cc 95ef814ffe3604341fd01d32ddee7d02 {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.RNA-Seq.genomic.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.genomic.gdc_realn.bam 7746588670 BAM genomic harmonized CPTAC3 86563bd1-d456-4bd9-be7b-c3b32910b6ab d71d4a066739a2813cdf37647b376797 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor"} -C3L-04475.RNA-Seq.S14_L004_R1.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R1_001.fastq.gz 3778418614 FASTQ S14_L004_R1 unaligned CPTAC3 a8a064eb-7b13-4787-a851-54149dc5efc1 0a5f9bb893b7398c02f3a15da126eddc {"aliquot_tag": "ALQ_41caebc", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.RNA-Seq.S14_L004_R1.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R1_001.fastq.gz 3522404258 FASTQ S14_L004_R1 unaligned CPTAC3 30d19a9a-ea38-4aef-bb05-c5b0f3a039ac c1dc9e8706c9013b9e6e3f12c09ade70 {"aliquot_tag": "ALQ_73deee15", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04475.RNA-Seq.S14_L004_R2.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R2_001.fastq.gz 4408642109 FASTQ S14_L004_R2 unaligned CPTAC3 33d050c4-19aa-41c1-b3bf-4621fb774485 c1ac4ac1cf6353bc9542da94987a5dcd {"aliquot_tag": "ALQ_41caebc", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.RNA-Seq.S14_L004_R2.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R2_001.fastq.gz 3938909364 FASTQ S14_L004_R2 unaligned CPTAC3 a2efd595-9842-4520-b7af-c47a68b62967 059c7e53f3a7012c58bffb3d0df81218 {"aliquot_tag": "ALQ_73deee15", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04475.RNA-Seq.transcriptome.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.transcriptome.gdc_realn.bam 10630287515 BAM transcriptome harmonized CPTAC3 951950ee-6768-462a-9ca3-82d24c991143 479edc379aff6c59aac560b7c1ea002e {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.RNA-Seq.transcriptome.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.transcriptome.gdc_realn.bam 9841128102 BAM transcriptome harmonized CPTAC3 d8e1ca6a-919e-42ed-b6b1-2ec5f6dd3cf5 b64534f5e7b7103a52bbaa4166e34984 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor"} -C3L-04475.Targeted.T C3L-04475 PDA Targeted_Sequencing tumor CPT0238820008 CPT0238820008.CustomSelection.RP-1303.PDO-18786.bam 4147639861 BAM aligned CPTAC3 5d15c9d0-381d-411b-9c2a-adca336f59e4 aaf7e3710f0bc209f16f759e2ff56e7e {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04475.Targeted.T.hg38 C3L-04475 PDA Targeted_Sequencing tumor CPT0238820008 219e156e-14e1-4e82-a09d-cba6cab0db1e_targetedsequencing_gdc_realn.bam 5844457746 BAM harmonized CPTAC3 d24a7953-1be1-479b-83a9-fad9bef7e8ab fcc7dab438971902350d5a71af3c701c {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04475.WGS.N C3L-04475 PDA WGS blood_normal CPT0238860002 CPT0238860002.WholeGenome.RP-1303.bam 63094510512 BAM aligned CPTAC3 13cecd7c-8c89-4352-961f-3ff747ecffb6 82a65490364ad64b832614f8d058f770 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04475.WGS.N.hg38 C3L-04475 PDA WGS blood_normal CPT0238860002 2bc0c8b9-2aca-4e33-b45e-1ba44ca3e4fc_wgs_gdc_realn.bam 91614213187 BAM harmonized CPTAC3 17238a3b-90bd-478b-883f-b61a6aa3bedf eef380451fe068ffc27bbfb943f167e4 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04475.WGS.T C3L-04475 PDA WGS tumor CPT0238820008 CPT0238820008.WholeGenome.RP-1303.bam 68086334744 BAM aligned CPTAC3 064a23e9-5187-4955-8cf4-e8da40151fef 660d6b0451cc3a03c9366090a28af71f {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04475.WGS.T.hg38 C3L-04475 PDA WGS tumor CPT0238820008 219e156e-14e1-4e82-a09d-cba6cab0db1e_wgs_gdc_realn.bam 100990298700 BAM harmonized CPTAC3 17fc61d6-0f01-45ee-8087-b78de8984763 eaaa18a3f32af1605412ace77b504f9d {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04475.WXS.A C3L-04475 PDA WXS tissue_normal CPT0248320006 CPT0248320006.WholeExome.RP-1303.bam 18967532521 BAM aligned CPTAC3 96ade4ca-c898-48d5-9b57-d88585d47740 d256ec3e5ee122118331e8c7572a9585 {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.WXS.A.hg38 C3L-04475 PDA WXS tissue_normal CPT0248320006 758d3779-5da1-4fb8-be2e-486c27d83603_wxs_gdc_realn.bam 26014707586 BAM harmonized CPTAC3 400ea884-1691-4894-8b04-8a123c5f0a74 71cc36563392ab98bb8a731bd660d84b {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04475.WXS.N C3L-04475 PDA WXS blood_normal CPT0238860002 CPT0238860002.WholeExome.RP-1303.bam 28296849974 BAM aligned CPTAC3 307e696f-82e8-45c6-b8e5-0b4b187dd9f6 933ab0ef0d7872cce57678b264920fd1 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04475.WXS.N.hg38 C3L-04475 PDA WXS blood_normal CPT0238860002 2bc0c8b9-2aca-4e33-b45e-1ba44ca3e4fc_wxs_gdc_realn.bam 39092044263 BAM harmonized CPTAC3 1e4f182e-d572-4fa9-82e8-4427d5d3b0e0 f411044511817c2860cb04bed5c52db4 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04475.WXS.T C3L-04475 PDA WXS tumor CPT0238820008 CPT0238820008.WholeExome.RP-1303.bam 44272983059 BAM aligned CPTAC3 5ba4264d-cf91-4713-af9a-2f12addc7c5a 4097b27a80f45759a7de96c9ec319ec5 {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04475.WXS.T.hg38 C3L-04475 PDA WXS tumor CPT0238820008 219e156e-14e1-4e82-a09d-cba6cab0db1e_wxs_gdc_realn.bam 62311499181 BAM harmonized CPTAC3 39338f38-a824-41dc-8fb4-0dcaa0586ca2 3ac8b508129068b16d7a57a324a3f085 {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor"} -C3L-04479.MethArray.Green.A C3L-04479 PDA Methylation_Array tissue_normal CPT0238940007 203561620050_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2072157f-6806-4dab-a4b3-3e9e92c6c873 0f3326887280db80482199cceba25cc3 {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04479.MethArray.Green.T C3L-04479 PDA Methylation_Array tumor CPT0238920007 203561450023_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a9e93344-6886-426d-8d56-6d1dab5564b7 c2e8bef2f34788f91dbecd0f7e14ecf6 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04479.MethArray.Red.A C3L-04479 PDA Methylation_Array tissue_normal CPT0238940007 203561620050_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 1f4656e1-0c0d-47ed-8266-6a0f5e464e8f 78966a004001155f0305202d0e5c2c73 {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04479.MethArray.Red.T C3L-04479 PDA Methylation_Array tumor CPT0238920007 203561450023_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 c4626521-377c-4c28-8c95-64ccfd036617 71dbe2826e3500790a68f6f717fccc61 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04479.miRNA-Seq.S45_L005_R1.T C3L-04479 PDA miRNA-Seq tumor CPT0238920010 190712_UNC32-K00270_0192_BH7HL3BBXY_CGTACG_S45_L005_R1_001.unaln.bam 196693533 BAM S45_L005_R1 unaligned CPTAC3 23b3d8b0-eeb9-4e2a-ace1-02e8c5090ce0 dc6a54547cb122c115e507e847012272 {"aliquot_tag": "ALQ_cf850d26", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04479.miRNA-Seq.T.hg38 C3L-04479 PDA miRNA-Seq tumor CPT0238920010 e93be60f-e553-4512-9f25-63d1439d21d0_mirnaseq_gdc_realn.bam 221334831 BAM harmonized CPTAC3 4e03b311-b192-4013-b80f-e720d1233358 f451b707524204343ee9248f6f50a2e2 {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor"} -C3L-04479.RNA-Seq.chimeric.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.chimeric.gdc_realn.bam 28403361 BAM chimeric harmonized CPTAC3 8e057a29-722e-417c-961b-0a8a8b2a9090 5d4e9479f79d3adaa66f4cb84b62829b {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor"} -C3L-04479.RNA-Seq.genomic.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.genomic.gdc_realn.bam 7689071568 BAM genomic harmonized CPTAC3 931f4b42-3c47-4f0f-ad3a-4a156da6ae21 0e98f22215b9bb14f7f2d06f29fa1a4f {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor"} -C3L-04479.RNA-Seq.S13_L004_R1.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R1_001.fastq.gz 3539480313 FASTQ S13_L004_R1 unaligned CPTAC3 0a0446f6-2bd9-4e7a-b205-4489e718fd1f 8410b13f2db7877df228d953d0d46dd6 {"aliquot_tag": "ALQ_cf850d26", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04479.RNA-Seq.S13_L004_R2.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R2_001.fastq.gz 3922836348 FASTQ S13_L004_R2 unaligned CPTAC3 ea7cae74-cb6b-4d52-a75f-82d1935e4ed3 d76768ed19426259a4a0bb361b48e6ba {"aliquot_tag": "ALQ_cf850d26", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04479.RNA-Seq.transcriptome.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.transcriptome.gdc_realn.bam 9846289486 BAM transcriptome harmonized CPTAC3 9496ccd5-0c73-4c1f-a4ef-05f6266c5790 cde0a1b6a9753ca8693678923dcc3a57 {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor"} -C3L-04479.Targeted.T C3L-04479 PDA Targeted_Sequencing tumor CPT0238920007 CPT0238920007.CustomSelection.RP-1303.PDO-18786.bam 4044801744 BAM aligned CPTAC3 fd7a5fe2-274b-45fe-96b9-f4939d75a518 6c659529f7aca816ed60c52320bb28ba {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04479.Targeted.T.hg38 C3L-04479 PDA Targeted_Sequencing tumor CPT0238920007 f67393d1-1d00-4c93-8268-e2e118602160_targetedsequencing_gdc_realn.bam 6051263237 BAM harmonized CPTAC3 2137fcc4-9fbe-4f35-8ae3-8881a0ade708 174c81c4098a37c25b4693b1e6673e8c {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04479.WGS.N C3L-04479 PDA WGS blood_normal CPT0238950002 CPT0238950002.WholeGenome.RP-1303.bam 57546056908 BAM aligned CPTAC3 0272b063-4e3f-4bba-b3f1-34b32463ed92 d9f7ef68b4c2f5508bc2476402877311 {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04479.WGS.N.hg38 C3L-04479 PDA WGS blood_normal CPT0238950002 a6eb5b09-7144-45f2-9ea8-2f05457aa440_wgs_gdc_realn.bam 83455298662 BAM harmonized CPTAC3 3f8032aa-b17d-408e-b800-fb1716196c0d 942c628d6c459a64f9b860475630d0d7 {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04479.WGS.T C3L-04479 PDA WGS tumor CPT0238920007 CPT0238920007.WholeGenome.RP-1303.bam 72805329001 BAM aligned CPTAC3 9e712980-c355-4831-b091-e53532aaceea b9f9e09f61df061fc0aa3b659e96f6d6 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04479.WGS.T.hg38 C3L-04479 PDA WGS tumor CPT0238920007 f67393d1-1d00-4c93-8268-e2e118602160_wgs_gdc_realn.bam 107868221031 BAM harmonized CPTAC3 d193537d-6e11-4a26-bfee-72399c8099fc 308dc45cfb7c74edb6db7651f76b9b21 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04479.WXS.A C3L-04479 PDA WXS tissue_normal CPT0238940007 CPT0238940007.WholeExome.RP-1303.bam 24805852974 BAM aligned CPTAC3 9ddedab0-9743-4efa-903a-b2971d082df2 a5e94d2999a26d9844733671fa1d813f {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04479.WXS.A.hg38 C3L-04479 PDA WXS tissue_normal CPT0238940007 50c48ada-b816-485a-875e-bd89f302f3bd_wxs_gdc_realn.bam 34272496265 BAM harmonized CPTAC3 b53ef914-1675-4592-abe1-aa1ffbf8a14f 0323a55547243a506a7d34d3f2a676ac {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04479.WXS.N C3L-04479 PDA WXS blood_normal CPT0238950002 CPT0238950002.WholeExome.RP-1303.bam 26446253757 BAM aligned CPTAC3 1a3548d0-8695-4220-adcf-6a4908138a22 39aa002e54b8aaeb14893f1664abccac {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04479.WXS.N.hg38 C3L-04479 PDA WXS blood_normal CPT0238950002 a6eb5b09-7144-45f2-9ea8-2f05457aa440_wxs_gdc_realn.bam 36552905667 BAM harmonized CPTAC3 cc12df9a-deba-436f-87a4-b924e725c1ee e3ddef28d6d4792ec61f8c8cda162b6a {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal"} -C3L-04479.WXS.T C3L-04479 PDA WXS tumor CPT0238920007 CPT0238920007.WholeExome.RP-1303.bam 83097181422 BAM aligned CPTAC3 cf62e6e6-e051-4b23-930a-df7b78629df1 6a8340895399e30a4cf3dcf316043792 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04479.WXS.T.hg38 C3L-04479 PDA WXS tumor CPT0238920007 f67393d1-1d00-4c93-8268-e2e118602160_wxs_gdc_realn.bam 116007719875 BAM harmonized CPTAC3 a7adae54-d0b6-45aa-a4a1-cdc16fb06e79 266aa90c91078865aed023d0fe7f7890 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor"} -C3L-04483.MethArray.Green.Tbm C3L-04483 AML Methylation_Array tumor_bone_marrow CPT0280240002 205589740002_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 560f2532-b83f-479d-bf16-16196872adb8 4ca53fe3b3a581cefdd81570cee66367 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.MethArray.Red.Tbm C3L-04483 AML Methylation_Array tumor_bone_marrow CPT0280240002 205589740002_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 a38647e1-3d07-4378-895b-510d07968910 fe2ff9a0e6e6a6d342ca2c643e9de4a5 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.miRNA-Seq.S12_L001_R1.Tbm C3L-04483 AML miRNA-Seq tumor_bone_marrow CPT0280250002 210702_UNC32-K00270_0289_AHKJ22BBXY_GCCAAT_S12_L001_R1_001.unaln.bam 300397036 BAM S12_L001_R1 unaligned CPTAC3 9bd8c421-bc81-4bb1-a693-17dba4f0a439 cec667e1b8ce4a1b5e1c18266d1e7e4d {"aliquot_tag": "ALQ_8ef223a9", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.miRNA-Seq.Tbm.hg38 C3L-04483 AML miRNA-Seq tumor_bone_marrow CPT0280250002 ad91e6a4-7dba-4753-bd28-85f24e4f46e5_mirnaseq_gdc_realn.bam 340255398 BAM harmonized CPTAC3 d63e54ee-025f-4ba9-b336-b456044ddc23 1216122380aefe963d26060feebac0bd {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.RNA-Seq.chimeric.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.chimeric.gdc_realn.bam 51206229 BAM chimeric harmonized CPTAC3 c158f449-cbdc-48b7-9d8f-8ede57e3f824 fdf86b1ea33b7d80ca955315b02c34c0 {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.RNA-Seq.genomic.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.genomic.gdc_realn.bam 7759602247 BAM genomic harmonized CPTAC3 326bea76-8325-4d77-88ab-04647cf30911 11c3fa0ce49713b107b3c058d69fd96c {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.RNA-Seq.S28_L007_R1.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 3883362168 FASTQ S28_L007_R1 unaligned CPTAC3 1ece23d9-50e4-4840-9368-54b95b44af41 3864638805af4c5067bd04f51b6b1156 {"aliquot_tag": "ALQ_8ef223a9", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.RNA-Seq.S28_L007_R2.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4097126030 FASTQ S28_L007_R2 unaligned CPTAC3 553777bf-1ca0-42a7-a5b0-af7bf80dafd7 1d9c902852f84c3aea4d0fb2e257c705 {"aliquot_tag": "ALQ_8ef223a9", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.RNA-Seq.transcriptome.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.transcriptome.gdc_realn.bam 8951713858 BAM transcriptome harmonized CPTAC3 48724126-02bc-4c27-9dd6-712ebc452196 fc6b20b1e25f1fdec9cef449a4170e6b {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.WGS.Nbc C3L-04483 AML WGS buccal_normal CPT0280230001 CPT0280230001.WholeGenome.RP-2158.bam 52119646344 BAM aligned CPTAC3 5836be83-3435-401e-8a6f-6e76dacb5e90 cfc3cd0bffd6adce0cf44831b80a9dcb {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04483.WGS.Nbc.hg38 C3L-04483 AML WGS buccal_normal CPT0280230001 702c3b45-dda9-4164-83d6-3bc4d436ad83_wgs_gdc_realn.bam 164113953203 BAM harmonized CPTAC3 708e41fa-402b-44c6-8464-85e884efcdf0 60a0916ed620569d3175d32668c40408 {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04483.WGS.Tbm C3L-04483 AML WGS tumor_bone_marrow CPT0280240002 CPT0280240002.WholeGenome.RP-2158.bam 50370968345 BAM aligned CPTAC3 739dc89b-264f-4039-be34-2adcc1d10330 b8994d0af3c7ff6973f939cd3e5abc1e {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.WGS.Tbm.hg38 C3L-04483 AML WGS tumor_bone_marrow CPT0280240002 f1a6c87e-6570-41b1-b355-b12ab88b8481_wgs_gdc_realn.bam 152206566574 BAM harmonized CPTAC3 3f38bb10-5dcf-4db0-9ff4-b35eb84847b6 0086daee5ea210098635f6b2f33c26f9 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.WXS.Nbc C3L-04483 AML WXS buccal_normal CPT0280230001 CPT0280230001.WholeExome.RP-1303.bam 26415771348 BAM aligned CPTAC3 e6bc0148-0602-41db-9870-b926ef0964b3 3b98a074e07bfa34257bf07b9df926dc {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04483.WXS.Nbc.hg38 C3L-04483 AML WXS buccal_normal CPT0280230001 702c3b45-dda9-4164-83d6-3bc4d436ad83_wxs_gdc_realn.bam 37011386097 BAM harmonized CPTAC3 a2b2218d-0336-4ba8-868c-8cbb6d8ecec1 e4b64dc5a656cac2b0c3f8f9aa78a9e3 {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04483.WXS.Tbm C3L-04483 AML WXS tumor_bone_marrow CPT0280240002 CPT0280240002.WholeExome.RP-1303.bam 20503831564 BAM aligned CPTAC3 774319aa-d88f-4bcf-91a3-0217aefdaf59 928005c9de14e11eb061db10040b9158 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04483.WXS.Tbm.hg38 C3L-04483 AML WXS tumor_bone_marrow CPT0280240002 f1a6c87e-6570-41b1-b355-b12ab88b8481_wxs_gdc_realn.bam 28707870850 BAM harmonized CPTAC3 434d6273-0703-43f4-a08e-fe98515df752 c1c8b822e3fc93d500c3963218a03c76 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.MethArray.Green.Tbm C3L-04486 AML Methylation_Array tumor_bone_marrow CPT0280550002 205549610122_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ae02b611-9759-42a7-bd7f-17058c740865 7072b53cf8c6d917199a23b4e047dc5e {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.MethArray.Red.Tbm C3L-04486 AML Methylation_Array tumor_bone_marrow CPT0280550002 205549610122_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 2e5c5a33-d640-4433-a99d-6ec3a95bfeaa a9417ed42235795e0fc96d62bffc70ae {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.miRNA-Seq.S7_L001_R1.Tbm C3L-04486 AML miRNA-Seq tumor_bone_marrow CPT0280560002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAGATC_S7_L001_R1_001.unaln.bam 245269332 BAM S7_L001_R1 unaligned CPTAC3 4b3aa569-726a-45a0-a6e1-7999ea280178 e7f0ce6efed7aa7af689cb996f1c8e32 {"aliquot_tag": "ALQ_d45769c1", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.miRNA-Seq.Tbm.hg38 C3L-04486 AML miRNA-Seq tumor_bone_marrow CPT0280560002 e43b49a1-e887-4541-9487-8c7a0d6ee918_mirnaseq_gdc_realn.bam 275502334 BAM harmonized CPTAC3 72859891-5e31-4cd4-abb8-24726d0d8f55 425385995aecebe6a6b344a9501cbd32 {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.RNA-Seq.chimeric.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.chimeric.gdc_realn.bam 56733896 BAM chimeric harmonized CPTAC3 0b875311-d782-455a-9f83-33d0399c2094 acca0558b708cc70f535296d399dcb9e {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.RNA-Seq.genomic.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.genomic.gdc_realn.bam 6993049248 BAM genomic harmonized CPTAC3 0a129ac8-826c-4a9c-9ffd-fa6c6ef4ed45 0a9abc589ecdadf52eaa114ac00a830d {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.RNA-Seq.S25_L007_R1.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R1_001.fastq.gz 3505940724 FASTQ S25_L007_R1 unaligned CPTAC3 97364e63-a98f-41b4-bcc8-a4a2ba459ea3 a0e60e974f3020a539a5490e1876dd7f {"aliquot_tag": "ALQ_d45769c1", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.RNA-Seq.S25_L007_R2.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R2_001.fastq.gz 3682566223 FASTQ S25_L007_R2 unaligned CPTAC3 270717a8-e9f6-4fae-936c-2abbf8d55a93 2f85f970e9d35953cbbed8bb08f86256 {"aliquot_tag": "ALQ_d45769c1", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.RNA-Seq.transcriptome.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.transcriptome.gdc_realn.bam 8193204367 BAM transcriptome harmonized CPTAC3 a57d0590-baad-47be-a0e6-7f125deaecf6 5ce9380f30a515e03dc896974ddcc00d {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.WGS.Nbc C3L-04486 AML WGS buccal_normal CPT0280540001 CPT0280540001.WholeGenome.RP-2158.bam 52605913973 BAM aligned CPTAC3 cb677994-d79a-4b78-a007-d877b7211d3d 982d69fd657bdfcfff90ac8da802df5e {"aliquot_tag": "ALQ_379e6b1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04486.WGS.Nbc.hg38 C3L-04486 AML WGS buccal_normal CPT0280540001 858c4c14-fba8-42ba-b73e-bc0248fee768_wgs_gdc_realn.bam 168425129082 BAM harmonized CPTAC3 99844d17-85aa-41d8-8dac-ee50133783a6 48f0681a3f8b947473a68d38d6a8e903 {"aliquot_tag": "ALQ_379e6b1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04486.WGS.Tbm C3L-04486 AML WGS tumor_bone_marrow CPT0280550002 CPT0280550002.WholeGenome.RP-2158.bam 47859394740 BAM aligned CPTAC3 81fa4f55-8e9f-4aaa-8c8b-49c2db791cd9 ead1bc160f13a2960c9eef2b1d2bbcd6 {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.WGS.Tbm.hg38 C3L-04486 AML WGS tumor_bone_marrow CPT0280550002 498dca59-144f-4287-a68a-35999a24634a_wgs_gdc_realn.bam 142452739212 BAM harmonized CPTAC3 7258358e-0e5d-40cb-bf66-47a73d1e835a b6220a9488a1414fa29c633190ef69e2 {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.WXS.Tbm C3L-04486 AML WXS tumor_bone_marrow CPT0280550002 CPT0280550002.WholeExome.RP-1303.bam 27150776670 BAM aligned CPTAC3 78ae1343-d89a-48e3-ac6c-47071fa4878e 7066e693ab4b7ad9a4d7c8236db18373 {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04486.WXS.Tbm.hg38 C3L-04486 AML WXS tumor_bone_marrow CPT0280550002 498dca59-144f-4287-a68a-35999a24634a_wxs_gdc_realn.bam 37508507909 BAM harmonized CPTAC3 7429a65f-8717-4d9a-a588-cb7fa49d57e8 8cf000dde2f783d86ce2e6576a115b7c {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04489.MethArray.Green.Tpb C3L-04489 AML Methylation_Array tumor_peripheral_blood CPT0300020002 205707890036_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 0f0b0459-8bad-4107-8e62-2ca21cc17879 d8e8bdb60b03b809f440be94a43f5cbf {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.MethArray.Red.Tpb C3L-04489 AML Methylation_Array tumor_peripheral_blood CPT0300020002 205707890036_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 4550b3c5-58ac-41fa-901d-564722336276 bcb5ba3e3a01f1e5fcfdad5a89db59bf {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.miRNA-Seq.S10_L001_R1.Tpb C3L-04489 AML miRNA-Seq tumor_peripheral_blood CPT0300030002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L001_R1_001.unaln.bam 306262396 BAM S10_L001_R1 unaligned CPTAC3 09d5594f-f70e-4108-8605-c4dec5d54a3a f33bd5da367ffe85cc3b1cccc8c3d063 {"aliquot_tag": "ALQ_88e478f4", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.miRNA-Seq.Tpb.hg38 C3L-04489 AML miRNA-Seq tumor_peripheral_blood CPT0300030002 001bf614-6ac0-451b-ae1c-b59472a43b1c_mirnaseq_gdc_realn.bam 338218029 BAM harmonized CPTAC3 7120e31d-f498-48be-a621-a68185485946 8d820e5ba6763564abb73d8d474faabb {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.RNA-Seq.chimeric.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.chimeric.gdc_realn.bam 664049440 BAM chimeric harmonized CPTAC3 a34a044e-4703-483f-96ea-e7ec355dc9bf e41321ae284365bddbd221cc1065691a {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.RNA-Seq.genomic.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.genomic.gdc_realn.bam 9107482825 BAM genomic harmonized CPTAC3 4df595cf-c425-43a8-bdb1-eb0188f5c1f9 da11d3c3a120207cb22a2bf03951426d {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.RNA-Seq.S14_L004_R1.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R1_001.fastq.gz 4091881710 FASTQ S14_L004_R1 unaligned CPTAC3 893bc095-7b43-4637-8907-176b83942bd4 9c179221561c19917f6a3ecd9aa877f0 {"aliquot_tag": "ALQ_88e478f4", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.RNA-Seq.S14_L004_R2.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R2_001.fastq.gz 4428309615 FASTQ S14_L004_R2 unaligned CPTAC3 4fbdbc23-e6f9-4b8c-8276-a7ece7600a77 937978555c086573841daa285bf61426 {"aliquot_tag": "ALQ_88e478f4", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.RNA-Seq.transcriptome.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.transcriptome.gdc_realn.bam 7637885479 BAM transcriptome harmonized CPTAC3 a22089c1-2b1b-45a6-8afc-67f6371e47be d188c3d0a97450595b18316bd5fe5a8a {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.WGS.Nbc C3L-04489 AML WGS buccal_normal CPT0299980001 CPT0299980001.WholeGenome.RP-2158.bam 64551663126 BAM aligned CPTAC3 1f718aa5-d4ac-4e59-b114-65e10de6a7ab c58f4764fdd8acdccf2acaac8fb4d843 {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04489.WGS.Nbc.hg38 C3L-04489 AML WGS buccal_normal CPT0299980001 c40e8654-b3db-46cb-a941-a2ca9f597275_wgs_gdc_realn.bam 188675373049 BAM harmonized CPTAC3 a6625c57-93f4-4c2e-b532-8c887d04f22c 08124b04aead061158aecbbaed99f2c5 {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04489.WGS.Tpb C3L-04489 AML WGS tumor_peripheral_blood CPT0300020002 CPT0300020002.WholeGenome.RP-2158.bam 61725265113 BAM aligned CPTAC3 fd85b48b-8edb-43e3-910d-6224a2d39210 4bf827b980f0539ea93ed3e1236f66c6 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.WGS.Tpb.hg38 C3L-04489 AML WGS tumor_peripheral_blood CPT0300020002 3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wgs_gdc_realn.bam 180784278937 BAM harmonized CPTAC3 a3d3e92c-ed2b-4a4b-8291-040d062ae556 bc712a239b26551de783d10072130217 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.WXS.Nbc C3L-04489 AML WXS buccal_normal CPT0299980001 CPT0299980001.WholeExome.RP-1303.bam 27796943985 BAM aligned CPTAC3 bb513703-b93b-4ae2-bc12-b45ee0b99470 687da230c19eb175be8f796fb04fac7b {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04489.WXS.Nbc.hg38 C3L-04489 AML WXS buccal_normal CPT0299980001 c40e8654-b3db-46cb-a941-a2ca9f597275_wxs_gdc_realn.bam 98070189416 BAM harmonized CPTAC3 59561b27-a5e3-420d-9f98-63d191c4e74c 0e3fb3b9178dca93695f4ac1b0df96be {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04489.WXS.Tpb C3L-04489 AML WXS tumor_peripheral_blood CPT0300020002 CPT0300020002.WholeExome.RP-1303.bam 28425899790 BAM aligned CPTAC3 81eef125-2345-4d4b-a0f3-8e7680f6f31b 0e80d5a420129a1e10ecd07254cdf640 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04489.WXS.Tpb.hg38 C3L-04489 AML WXS tumor_peripheral_blood CPT0300020002 3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wxs_gdc_realn.bam 39139211183 BAM harmonized CPTAC3 0ac42abf-43ea-46f0-a2e0-1b4c2b810106 aa4f5e784f29f431b6438116f62cc684 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04495.MethArray.Green.A C3L-04495 PDA Methylation_Array tissue_normal CPT0239140007 203561620086_R06C01_Grn.idat 13676237 IDAT Green NA CPTAC3 6be2b94b-9297-499c-a262-43a23847d74e c2919fb1c6a7f7e1d42968e1e3a7a0e0 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04495.MethArray.Green.T C3L-04495 PDA Methylation_Array tumor CPT0239100012 203561620040_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 bf2e7c30-dcdf-4dea-b5d1-7e453f7ab5ac 1cdf4cb4a6e1f6ad6467e2e9edd16849 {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04495.MethArray.Red.A C3L-04495 PDA Methylation_Array tissue_normal CPT0239140007 203561620086_R06C01_Red.idat 13676237 IDAT Red NA CPTAC3 3d7d6823-5dff-457d-8e1c-5c1c816a8d4b 3b9ae1c78be00a8e894be2fdae8a2ba5 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04495.MethArray.Red.T C3L-04495 PDA Methylation_Array tumor CPT0239100012 203561620040_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 933ae9a6-8ef9-49b0-84d8-0259535aec20 02b7e56a00c96f4d36144d82e8188eaa {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04495.miRNA-Seq.S17_L006_R1.T C3L-04495 PDA miRNA-Seq tumor CPT0239100015 190712_UNC32-K00270_0192_BH7HL3BBXY_GACGAC_S17_L006_R1_001.unaln.bam 216522026 BAM S17_L006_R1 unaligned CPTAC3 1583ad51-813e-47f1-9fbd-ec4f32f02829 af7ac73b637e4f634198ad216e106540 {"aliquot_tag": "ALQ_8f0b2310", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04495.miRNA-Seq.T.hg38 C3L-04495 PDA miRNA-Seq tumor CPT0239100015 033d8cf1-959b-47d5-a607-129079a8c173_mirnaseq_gdc_realn.bam 246360639 BAM harmonized CPTAC3 39357f78-abb8-4e0c-8dcd-9670eed43fc3 b0fb1d628038096e26c29bf15b157bb4 {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor"} -C3L-04495.RNA-Seq.chimeric.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.chimeric.gdc_realn.bam 40799038 BAM chimeric harmonized CPTAC3 564a6493-438e-4feb-9c15-54825cf6d0a2 1ca04ff6a5e5d9d53ccce245cbe36106 {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor"} -C3L-04495.RNA-Seq.genomic.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.genomic.gdc_realn.bam 8342435953 BAM genomic harmonized CPTAC3 323ab26e-d342-4127-9838-9d667a3009d2 ba3d50ea6572abaa8b5cf796be610cbb {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor"} -C3L-04495.RNA-Seq.S11_L003_R1.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R1_001.fastq.gz 3310477843 FASTQ S11_L003_R1 unaligned CPTAC3 165bff0a-b883-4098-b18f-ff82d102e506 0ba1cbd4cd92f82550ac7c139ae94e3a {"aliquot_tag": "ALQ_8f0b2310", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04495.RNA-Seq.S11_L003_R2.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R2_001.fastq.gz 3637048729 FASTQ S11_L003_R2 unaligned CPTAC3 5d7103c9-28f9-4015-8faa-16fc46808618 d15b5797c6b062ee9d3f485345bfe048 {"aliquot_tag": "ALQ_8f0b2310", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04495.RNA-Seq.transcriptome.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.transcriptome.gdc_realn.bam 8109919530 BAM transcriptome harmonized CPTAC3 94ea282d-3955-44fb-8a6f-84e2f1a1d955 21a82141d63f0565ebb37502d3a90ec6 {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor"} -C3L-04495.Targeted.T C3L-04495 PDA Targeted_Sequencing tumor CPT0239100012 CPT0239100012.CustomSelection.RP-1303.PDO-18786.bam 5054387145 BAM aligned CPTAC3 65896bba-f581-4a74-82af-fc386d89bbc4 aaa237bacbaf2c05a805eafb8c2889ac {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04495.Targeted.T.hg38 C3L-04495 PDA Targeted_Sequencing tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_targetedsequencing_gdc_realn.bam 6997693977 BAM harmonized CPTAC3 fae2e5dd-443a-44b6-87c4-34ef3e8c9c14 90d2a565cbc71715bffd5e2b032c4876 {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04495.WGS.N C3L-04495 PDA WGS blood_normal CPT0239150002 CPT0239150002.WholeGenome.RP-1303.bam 71976548906 BAM aligned CPTAC3 b9b90f86-47fc-4185-82ac-8d84c42b2f2d 44e20e46b1211732a08666c0584c9244 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal"} -C3L-04495.WGS.N.hg38 C3L-04495 PDA WGS blood_normal CPT0239150002 b3f9a3d2-80f0-4db7-bc8c-e3a45cd91e2b_wgs_gdc_realn.bam 106890095598 BAM harmonized CPTAC3 6376abc5-61d7-45c7-950a-ef8321e16243 fbe1c76b74ecb35633298064c9289267 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal"} -C3L-04495.WGS.T C3L-04495 PDA WGS tumor CPT0239100012 CPT0239100012.WholeGenome.RP-1303.bam 71927431604 BAM aligned CPTAC3 7d1d5c1d-00a3-40c5-9607-2aba14939996 a9175669c2958f3023d133afb5f3d75a {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04495.WGS.T.hg38 C3L-04495 PDA WGS tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_wgs_gdc_realn.bam 106340161792 BAM harmonized CPTAC3 71ebf493-075b-4b39-9a05-0c17fc0b2e16 60743d57edf504b64b6a501b03354065 {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04495.WXS.A C3L-04495 PDA WXS tissue_normal CPT0239140007 CPT0239140007.WholeExome.RP-1303.bam 22324123294 BAM aligned CPTAC3 55263021-065f-4b28-ba0a-51500a9bb789 5765b816a46f128b14a8ce012d176c78 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04495.WXS.A.hg38 C3L-04495 PDA WXS tissue_normal CPT0239140007 cb57182c-a626-491a-be3b-8ea883179e8f_wxs_gdc_realn.bam 30384322148 BAM harmonized CPTAC3 b6335cdf-2a33-4416-8a67-3ba0f677679d c0fa0ddec6012ad211a886becca9fa45 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04495.WXS.N C3L-04495 PDA WXS blood_normal CPT0239150002 CPT0239150002.WholeExome.RP-1303.bam 29127738199 BAM aligned CPTAC3 06fa30d1-4132-49dc-8245-42a98a8fe30a 345c5984d6b2c14a7bf6d064175980d7 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal"} -C3L-04495.WXS.N.hg38 C3L-04495 PDA WXS blood_normal CPT0239150002 b3f9a3d2-80f0-4db7-bc8c-e3a45cd91e2b_wxs_gdc_realn.bam 39969909601 BAM harmonized CPTAC3 19d20b8d-942f-4e2d-8084-e9e4d00175f8 0041da17f3caf63feed5dd2e3634f943 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal"} -C3L-04495.WXS.T C3L-04495 PDA WXS tumor CPT0239100012 CPT0239100012.WholeExome.RP-1303.bam 42696955248 BAM aligned CPTAC3 82da46b7-04c4-4c96-af56-66afde853593 d64d983a2c14018b5eb143b8d4eb619b {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04495.WXS.T.hg38 C3L-04495 PDA WXS tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_wxs_gdc_realn.bam 58899842046 BAM harmonized CPTAC3 cc7ace0c-4b41-4b67-977b-7669e12f1547 4e04ee9c8217baf0e0d7dc90c890960e {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor"} -C3L-04496.RNA-Seq.chimeric.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.chimeric.gdc_realn.bam 176513117 BAM chimeric harmonized CPTAC3 2b4748c9-379e-4371-b688-10f696c97411 4f7cd2a1219cb4e1c003a9555c56452f {"aliquot_tag": "ALQ_5dbda989", "gdc_sample_type": "Primary Tumor"} -C3L-04496.RNA-Seq.genomic.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.genomic.gdc_realn.bam 8913342157 BAM genomic harmonized CPTAC3 3faece61-f08e-40a6-b305-712719ec69ab 6cec8871753b0329b91f0b96be5ef54e {"aliquot_tag": "ALQ_5dbda989", "gdc_sample_type": "Primary Tumor"} -C3L-04496.RNA-Seq.S64_R1.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R1_001.fastq.gz 5632256532 FASTQ S64_R1 unaligned CPTAC3 ad7050e7-829c-4255-adf9-fcc5bb6a0786 a5cc154480b6b94529b6e2b2eb051004 {"aliquot_tag": "ALQ_5dbda989", "sample": "S64", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04496.RNA-Seq.S64_R2.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R2_001.fastq.gz 5719709301 FASTQ S64_R2 unaligned CPTAC3 e89fca3c-3404-4fdb-afd8-95f8698c0b41 922233e3d258b98c57512c27cada7988 {"aliquot_tag": "ALQ_5dbda989", "sample": "S64", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04496.RNA-Seq.transcriptome.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.transcriptome.gdc_realn.bam 5594905231 BAM transcriptome harmonized CPTAC3 b7c4c215-dfc1-40ab-9536-166929f09406 66515ef196a812c8af4ec74917170281 {"aliquot_tag": "ALQ_5dbda989", "gdc_sample_type": "Primary Tumor"} -C3L-04505.MethArray.Green.Tbm C3L-04505 AML Methylation_Array tumor_bone_marrow CPT0260200002 203561450068_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4a519a86-b13b-4767-a21c-584ddf88f6de a69512f3651f2a626f8975abd79a4ba6 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.MethArray.Red.Tbm C3L-04505 AML Methylation_Array tumor_bone_marrow CPT0260200002 203561450068_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 726f778d-267d-4778-81f5-ce8157a2e3bd 6f5eed506ed34f9cfb36406c3ca1e3d7 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.miRNA-Seq.S25_L002_R1.Tbm C3L-04505 AML miRNA-Seq tumor_bone_marrow CPT0260220002 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTGAT_S25_L002_R1_001.unaln.bam 208980673 BAM S25_L002_R1 unaligned CPTAC3 fe8147c1-656c-4755-b707-ba73be4934a4 69d2f017d2038d0d301fe3db9c7e4e71 {"aliquot_tag": "ALQ_2958ed8b", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.miRNA-Seq.Tbm.hg38 C3L-04505 AML miRNA-Seq tumor_bone_marrow CPT0260220002 8c3c5eb8-b82d-46b6-85d6-cd7c5be3c732_mirnaseq_gdc_realn.bam 228448541 BAM harmonized CPTAC3 f494f859-8150-486e-b4ec-09e6cd967f5c 4ff7e6bd69b438f2075033464adde4ff {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.RNA-Seq.chimeric.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.chimeric.gdc_realn.bam 47623569 BAM chimeric harmonized CPTAC3 9eb0e99b-b15a-45e8-a5cb-293ecba7ec0e b24f906677b476f4eae940ae75a6aeae {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.RNA-Seq.genomic.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.genomic.gdc_realn.bam 8721227961 BAM genomic harmonized CPTAC3 0913c28b-dfb6-437f-bc19-e3f24da616b1 0e0abaa2666518bf28e6771042097cf3 {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.RNA-Seq.S19_L006_R1.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R1_001.fastq.gz 4195277363 FASTQ S19_L006_R1 unaligned CPTAC3 ba291ac6-8d33-47bf-abd9-bec94a701732 d541a66e9f29840857921b749a7a659d {"aliquot_tag": "ALQ_2958ed8b", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.RNA-Seq.S19_L006_R2.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R2_001.fastq.gz 4661956424 FASTQ S19_L006_R2 unaligned CPTAC3 5557fd11-809c-49a6-b118-7e7ca5e54935 ad7bcaf251127ba4ed71a29bd3fe72da {"aliquot_tag": "ALQ_2958ed8b", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.RNA-Seq.transcriptome.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.transcriptome.gdc_realn.bam 9015987746 BAM transcriptome harmonized CPTAC3 cc57bbe8-a738-4fb3-8072-86768a4faa7b ac230de01d7f6ca5e86f94579e486f8d {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.WGS.Nbc C3L-04505 AML WGS buccal_normal CPT0260190002 CPT0260190002.WholeGenome.RP-1303.bam 75024756758 BAM aligned CPTAC3 149ecc0f-5f99-4867-bb26-bd3f6123f1f6 e9e2926cd0b5fff4013ea991c598aac9 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04505.WGS.Nbc.hg38 C3L-04505 AML WGS buccal_normal CPT0260190002 a3a5280c-83e2-460b-9dfb-9d1c5b7f38bb_wgs_gdc_realn.bam 107625952032 BAM harmonized CPTAC3 1f46e1d8-e1bc-47a3-95b5-841d6ef1fc43 2da9e8c684070c367e8ff49e7268df41 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04505.WGS.Tbm C3L-04505 AML WGS tumor_bone_marrow CPT0260200002 CPT0260200002.WholeGenome.RP-1303.bam 67617021929 BAM aligned CPTAC3 ef2315bf-84bc-4dbe-8288-acb1f66b8242 ef01e900247afc7bf907d0273788c641 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.WGS.Tbm.hg38 C3L-04505 AML WGS tumor_bone_marrow CPT0260200002 94a8b257-0c7d-456d-86b4-df80ae095a53_wgs_gdc_realn.bam 99185869192 BAM harmonized CPTAC3 947c69cd-c679-42d6-865e-2697bb566e2d 5e8a2a811e6cd0b6e8cef4309af56786 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.WXS.Nbc C3L-04505 AML WXS buccal_normal CPT0260190002 CPT0260190002.WholeExome.RP-1303.bam 25682414995 BAM aligned CPTAC3 b47af3fc-2f60-43a5-8f77-af1d1678cade f2c2e6292d4784e9496920533e4dd5d4 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04505.WXS.Nbc.hg38 C3L-04505 AML WXS buccal_normal CPT0260190002 a3a5280c-83e2-460b-9dfb-9d1c5b7f38bb_wxs_gdc_realn.bam 35791175469 BAM harmonized CPTAC3 43f12e45-3829-4c28-bb38-135b74b32a68 7eb060ad6aa965e3b905a39b7c76b4a3 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04505.WXS.Tbm C3L-04505 AML WXS tumor_bone_marrow CPT0260200002 CPT0260200002.WholeExome.RP-1303.bam 23467812539 BAM aligned CPTAC3 c9b4d06c-49fe-4da6-bffb-6f96ece1e387 b5193c5726cf91cdc6c07211976fa753 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04505.WXS.Tbm.hg38 C3L-04505 AML WXS tumor_bone_marrow CPT0260200002 94a8b257-0c7d-456d-86b4-df80ae095a53_wxs_gdc_realn.bam 32774233045 BAM harmonized CPTAC3 7e4a4227-1c33-498b-921a-1098fafdf043 86deab56dd4730d1aec40331339265d6 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.MethArray.Green.Tbm C3L-04508 AML Methylation_Array tumor_bone_marrow CPT0260410002 203561620064_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 8d8e6632-6889-4035-89bc-c02b5bc569bf 28bb2058671f3480928d28c7e0a75a1d {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.MethArray.Red.Tbm C3L-04508 AML Methylation_Array tumor_bone_marrow CPT0260410002 203561620064_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 674da194-d8a5-473d-a64f-707be22cf5b1 93a74c5ddb6480df0a77524493b1bcb4 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.miRNA-Seq.S1_L003_R1.Tbm C3L-04508 AML miRNA-Seq tumor_bone_marrow CPT0260420002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L003_R1_001.unaln.bam 357516687 BAM S1_L003_R1 unaligned CPTAC3 ae825b24-4d64-4b5c-90fd-92f3ecb0d3db 56a197298fb7cf51ce3e83f58b8dba39 {"aliquot_tag": "ALQ_ff010e96", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.miRNA-Seq.Tbm.hg38 C3L-04508 AML miRNA-Seq tumor_bone_marrow CPT0260420002 47c1b0cd-77c4-4fb1-b97f-298185dfe2bd_mirnaseq_gdc_realn.bam 390705894 BAM harmonized CPTAC3 c499f060-59ed-49f2-bada-cfc8ceb6eaf4 0f44b320ef41aea6fbe223da2907ed70 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.RNA-Seq.chimeric.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.chimeric.gdc_realn.bam 50016037 BAM chimeric harmonized CPTAC3 03183bdf-1feb-4077-9f4c-de08db883fee b8aa1032d3f4ae3eb115999784d30e60 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.RNA-Seq.genomic.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.genomic.gdc_realn.bam 9249246885 BAM genomic harmonized CPTAC3 eb8a80ec-42ec-496d-bcc0-a0ae095bbe2a c5d3004567344f2194a982f61c5b0762 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.RNA-Seq.S5_L002_R1.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R1_001.fastq.gz 4562468942 FASTQ S5_L002_R1 unaligned CPTAC3 030e9e72-38d2-4d03-a9bd-fe44189eb0c1 d68d87df125466318490723db95cb303 {"aliquot_tag": "ALQ_ff010e96", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.RNA-Seq.S5_L002_R2.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R2_001.fastq.gz 5038034529 FASTQ S5_L002_R2 unaligned CPTAC3 9e9e843f-3b4f-4fd4-9f51-6bc02b3d1a91 1f9be3c4e20cc3f6c5a040978c32a02c {"aliquot_tag": "ALQ_ff010e96", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.RNA-Seq.transcriptome.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.transcriptome.gdc_realn.bam 10263600128 BAM transcriptome harmonized CPTAC3 0c30d624-3a5b-4beb-8b63-b32648608ab4 72ed56052ad681730030ca9244bbb369 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.WGS.Tbm C3L-04508 AML WGS tumor_bone_marrow CPT0260410002 CPT0260410002.WholeGenome.RP-1303.bam 61188913765 BAM aligned CPTAC3 2fddfc53-64ea-4583-88ea-e568e06c6ad0 82c090d1dcd0a1b82547a09d63080030 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.WGS.Tbm.hg38 C3L-04508 AML WGS tumor_bone_marrow CPT0260410002 fdb0ac1e-04ff-42a2-b94e-e0601601bd3f_wgs_gdc_realn.bam 90844622922 BAM harmonized CPTAC3 cc0aee4c-9d1f-42de-9753-a19867f49f6c c0f6fb23e54606e53274b517f91127a4 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.WXS.Nbc C3L-04508 AML WXS buccal_normal CPT0260400003 CPT0260400003.WholeExome.RP-1303.bam 20217568361 BAM aligned CPTAC3 142af992-b115-4035-8f65-5c0fdb469f7b 2e2bb82f620a5f63cc3a95016c9782c4 {"aliquot_tag": "ALQ_f2c66d60", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04508.WXS.Nbc.hg38 C3L-04508 AML WXS buccal_normal CPT0260400003 abfc8193-39ad-46cb-a862-43400dcfb1e9_wxs_gdc_realn.bam 28008255853 BAM harmonized CPTAC3 810d5168-1549-4f11-b0ed-c9dce053aae2 30c4ab3e3c5594d1e44bfc17dff311fd {"aliquot_tag": "ALQ_f2c66d60", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04508.WXS.Tbm C3L-04508 AML WXS tumor_bone_marrow CPT0260410002 CPT0260410002.WholeExome.RP-1303.bam 24677692297 BAM aligned CPTAC3 eeb45233-83e6-4178-8cc2-4d48508d9560 e8698a4dc918e495e15b6d56d6d76287 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04508.WXS.Tbm.hg38 C3L-04508 AML WXS tumor_bone_marrow CPT0260410002 fdb0ac1e-04ff-42a2-b94e-e0601601bd3f_wxs_gdc_realn.bam 34209542719 BAM harmonized CPTAC3 92e1a7b5-1222-4ece-b133-dbe4ea5695ef fac0ba8404599fa7d8a8080bea315f40 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04537.MethArray.Green.T C3L-04537 GBM Methylation_Array tumor CPT0264330006 204367490029_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 63333b06-e989-4723-b5bf-a3eeaa691604 463e3f424f74118223485dfe839d4792 {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor"} -C3L-04537.MethArray.Red.T C3L-04537 GBM Methylation_Array tumor CPT0264330006 204367490029_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 687374eb-8fe2-4377-9c33-eb11fbed82ab 6698b55000f0b861ad514dbee48e8ec8 {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor"} -C3L-04537.miRNA-Seq.S3_L001_R1.T C3L-04537 GBM miRNA-Seq tumor CPT0264330009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 160338019 BAM S3_L001_R1 unaligned CPTAC3 e0433688-2cf4-4012-a31c-40858a47f20c a9d726e79b842df3f130d295a107bdd5 {"aliquot_tag": "ALQ_bcf9ea05", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04537.miRNA-Seq.T.hg38 C3L-04537 GBM miRNA-Seq tumor CPT0264330009 e2c8afe9-1334-41fe-84ea-44ffde88c54b_mirnaseq_gdc_realn.bam 175870324 BAM harmonized CPTAC3 dae48e44-42b5-4715-b6cc-3bedcb382738 2e32777e3889d50fffb0062623c49eda {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor"} -C3L-04537.RNA-Seq.chimeric.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.chimeric.gdc_realn.bam 31737144 BAM chimeric harmonized CPTAC3 d79ea2da-e345-40fc-ba2a-f135616ee641 646234d4cf3f84898af61f259a34f05d {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor"} -C3L-04537.RNA-Seq.genomic.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.genomic.gdc_realn.bam 7861451470 BAM genomic harmonized CPTAC3 719ec9da-6c6a-48cb-b0db-a555f97e9d17 31483f917ad5e0b5e2329480b59a30ce {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor"} -C3L-04537.RNA-Seq.S19_L005_R1.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R1_001.fastq.gz 3611841350 FASTQ S19_L005_R1 unaligned CPTAC3 adf59d70-7072-4025-8eba-01d2dcd6e667 9f079fe2d490cdefb9cb37efc869c0d0 {"aliquot_tag": "ALQ_bcf9ea05", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04537.RNA-Seq.S19_L005_R2.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ S19_L005_R2 unaligned CPTAC3 cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 af74daf39ea1442b2d6bc29a4b53813c {"aliquot_tag": "ALQ_bcf9ea05", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04537.RNA-Seq.transcriptome.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.transcriptome.gdc_realn.bam 9758852519 BAM transcriptome harmonized CPTAC3 ea32352d-33d3-469d-b550-583b9afe884c 811cfecc3078235254efa21a6bb9d9c4 {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor"} -C3L-04537.WGS.N C3L-04537 GBM WGS blood_normal CPT0265790002 CPT0265790002.WholeGenome.RP-2158.bam 28393863499 BAM aligned CPTAC3 4c3e04d4-4e57-430d-9ed0-3ba74a599c96 4d7648eb5647ea91c50ba4b8f8db64f6 {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04537.WGS.N.hg38 C3L-04537 GBM WGS blood_normal CPT0265790002 b2eb19a2-f110-438f-b16c-26dc0f691c14_wgs_gdc_realn.bam 84679557904 BAM harmonized CPTAC3 90c46761-ce1b-43f8-ae6a-af25020697fe a95e3329b7a11d65747272ec55ea192e {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04537.WGS.T C3L-04537 GBM WGS tumor CPT0264330006 CPT0264330006.WholeGenome.RP-2158.bam 35253805632 BAM aligned CPTAC3 b7552f3d-2324-4f5d-a10d-aa1a3b3520df c92bfbb2bc6f91e49f445fd722103a15 {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor"} -C3L-04537.WGS.T.hg38 C3L-04537 GBM WGS tumor CPT0264330006 20533eda-81e3-40c8-842b-40b3e338127c_wgs_gdc_realn.bam 105840080534 BAM harmonized CPTAC3 14a5f061-baa1-413d-a21d-4a266877dc04 67b06b4da15fb23c1bf0c385af1a2f0f {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor"} -C3L-04537.WXS.N C3L-04537 GBM WXS blood_normal CPT0265790002 CPT0265790002.WholeExome.RP-1303.bam 18886184900 BAM aligned CPTAC3 084de537-e6d0-47bb-b803-18328837cf04 ad4027d5087622d5cb5de39db5b40730 {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04537.WXS.N.hg38 C3L-04537 GBM WXS blood_normal CPT0265790002 b2eb19a2-f110-438f-b16c-26dc0f691c14_wxs_gdc_realn.bam 25476423801 BAM harmonized CPTAC3 84320c1f-226b-431c-8240-fe28ad4a4894 ed0fbdb742a4496153fd5053b6536dbc {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04537.WXS.T C3L-04537 GBM WXS tumor CPT0264330006 CPT0264330006.WholeExome.RP-1303.bam 16941472007 BAM aligned CPTAC3 d94de8f2-a9d7-4bcc-a5ca-7fcf6dc65790 0cb624dd9ca72d20f030f117fecd6f3c {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor"} -C3L-04537.WXS.T.hg38 C3L-04537 GBM WXS tumor CPT0264330006 20533eda-81e3-40c8-842b-40b3e338127c_wxs_gdc_realn.bam 24973995963 BAM harmonized CPTAC3 d2ea7a2e-737f-4704-8731-492f2cd1c8e9 a9a68c2363e480d844d9ed1827fc45ab {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor"} -C3L-04539.MethArray.Green.T C3L-04539 GBM Methylation_Array tumor CPT0264350006 204372030085_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f6094fa9-72a0-40a0-b477-635a457bd0a1 8d45a786a862677c1ba68d64ef0a678f {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor"} -C3L-04539.MethArray.Red.T C3L-04539 GBM Methylation_Array tumor CPT0264350006 204372030085_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 0243e79d-f860-437d-b8d3-ae877033d6a3 434542391e1717d56f9dbd89613d0408 {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor"} -C3L-04539.miRNA-Seq.S4_L001_R1.T C3L-04539 GBM miRNA-Seq tumor CPT0264350009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 175572653 BAM S4_L001_R1 unaligned CPTAC3 588e9b9c-f58d-442d-8337-96f2f4a8ff5d da1711c418b4771166b969812903db74 {"aliquot_tag": "ALQ_33b91fa5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04539.miRNA-Seq.T.hg38 C3L-04539 GBM miRNA-Seq tumor CPT0264350009 d7cf6ba2-3742-4f46-b660-a588eeb66304_mirnaseq_gdc_realn.bam 196058858 BAM harmonized CPTAC3 67bdfc12-9aa8-4108-ab7a-2a3baec90666 701fc9094e3355c62bcea06591320c5b {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor"} -C3L-04539.RNA-Seq.chimeric.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.chimeric.gdc_realn.bam 30204293 BAM chimeric harmonized CPTAC3 cf12258c-0866-433d-89fa-e652890e2b83 8ca1f1d834ef1bfad28ae0e940ddff40 {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor"} -C3L-04539.RNA-Seq.genomic.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.genomic.gdc_realn.bam 7643857120 BAM genomic harmonized CPTAC3 2e77a9cf-6857-47ab-a0f4-9256b7466451 f82e84272263602e7f35dfcee6a1cb00 {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor"} -C3L-04539.RNA-Seq.S20_L005_R1.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ S20_L005_R1 unaligned CPTAC3 9b56e66a-4850-46ec-b519-5379c91aa066 e8747e07e6763ca7c23d24cd8ac16cd2 {"aliquot_tag": "ALQ_33b91fa5", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04539.RNA-Seq.S20_L005_R2.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ S20_L005_R2 unaligned CPTAC3 5a856d4a-bb70-45dc-af41-53ec656ffc10 1806f53223d43577fa53667a94e8a692 {"aliquot_tag": "ALQ_33b91fa5", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04539.RNA-Seq.transcriptome.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.transcriptome.gdc_realn.bam 8130031489 BAM transcriptome harmonized CPTAC3 d6e56972-20d2-4720-aa6f-79725bfc1d4d c268e266075febef9461b6c25a70d096 {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor"} -C3L-04539.WGS.N C3L-04539 GBM WGS blood_normal CPT0265800002 CPT0265800002.WholeGenome.RP-2158.bam 35537633707 BAM aligned CPTAC3 de26b2e4-b960-4ff2-bdb0-ef982fa91c77 b1bb1888ddec94689903269b8ea6d9bd {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04539.WGS.N.hg38 C3L-04539 GBM WGS blood_normal CPT0265800002 56cd7cd6-c6e0-4a44-90df-b10abcd38233_wgs_gdc_realn.bam 106937786996 BAM harmonized CPTAC3 35697bb3-4b0e-498e-86b8-045a3b37c481 ec840a40e77688a67ea020ea3280b40e {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04539.WGS.T C3L-04539 GBM WGS tumor CPT0264350006 CPT0264350006.WholeGenome.RP-2158.bam 25110093183 BAM aligned CPTAC3 9fe4e777-e8ff-4089-9f15-42ca3ac3d0e7 5c80b62b120630cc1e6f949b8891ece6 {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor"} -C3L-04539.WGS.T.hg38 C3L-04539 GBM WGS tumor CPT0264350006 db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wgs_gdc_realn.bam 73888912902 BAM harmonized CPTAC3 340ee94a-a5d8-4417-b332-3d171f38544c 950084732e23b019fad9a7e477a07e37 {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor"} -C3L-04539.WXS.N C3L-04539 GBM WXS blood_normal CPT0265800002 CPT0265800002.WholeExome.RP-1303.bam 22916690436 BAM aligned CPTAC3 7ec1ce3e-b174-4d8c-b4a6-df52f55f7fbd 4267b93069c3af9e3db6f5e04763d5a6 {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04539.WXS.N.hg38 C3L-04539 GBM WXS blood_normal CPT0265800002 56cd7cd6-c6e0-4a44-90df-b10abcd38233_wxs_gdc_realn.bam 32221310803 BAM harmonized CPTAC3 5b6bf6d8-1ba8-40f2-b72c-7209488eb46d 997c3ce8fd8391119e3c1461e04b3e0d {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04539.WXS.T C3L-04539 GBM WXS tumor CPT0264350006 CPT0264350006.WholeExome.RP-1303.bam 18379018263 BAM aligned CPTAC3 c3a91aa6-8512-457b-8e07-7495071ebab8 ded3753e9ecdfa838646f0797852cf6f {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor"} -C3L-04539.WXS.T.hg38 C3L-04539 GBM WXS tumor CPT0264350006 db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wxs_gdc_realn.bam 25583695395 BAM harmonized CPTAC3 44d32def-ea17-4d6a-97a9-4326d8d2d45b 97ff62b8e81a7fb377085c66895f2cac {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor"} -C3L-04728.MethArray.Green.T C3L-04728 LSCC Methylation_Array tumor CPT0304210006 204367490151_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 51fca465-0585-437a-a70b-0d50796fc734 68771749b65987b647873256fb93ff3d {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor"} -C3L-04728.MethArray.Red.T C3L-04728 LSCC Methylation_Array tumor CPT0304210006 204367490151_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 5dde43c3-32cc-4515-b322-e3f055c045ac 13367b60ec90be4203c5cf9a9ba9c306 {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor"} -C3L-04728.miRNA-Seq.S10_L008_R1.T C3L-04728 LSCC miRNA-Seq tumor CPT0304210009 200224_UNC31-K00269_0267_AHC722BBXY_TAGCTT_S10_L008_R1_001.unaln.bam 223644871 BAM S10_L008_R1 unaligned CPTAC3 c9247f3b-2fce-49e5-9235-b17f8d74488b 2a3e59920a2721f7baba33d528ae5f8b {"aliquot_tag": "ALQ_dc717704", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04728.miRNA-Seq.T.hg38 C3L-04728 LSCC miRNA-Seq tumor CPT0304210009 d9a8f749-302b-46d9-8977-a8c1882e0abc_mirnaseq_gdc_realn.bam 247148853 BAM harmonized CPTAC3 e81b44fd-5351-442b-8742-7e4b1eff7e7b f60c73fa2c3984a2c3d1d5fd74b6462a {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor"} -C3L-04728.RNA-Seq.chimeric.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.chimeric.gdc_realn.bam 43681674 BAM chimeric harmonized CPTAC3 07d34b8f-f59a-4e86-8ea9-3be918b2b53f 1dda597283a534f6eb3968480cb510c4 {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor"} -C3L-04728.RNA-Seq.genomic.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.genomic.gdc_realn.bam 11002863245 BAM genomic harmonized CPTAC3 d8dbb2da-ba68-4181-adf3-022f18a4f7b2 97a4074e695322af831da4ef04cc4721 {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor"} -C3L-04728.RNA-Seq.S10_L003_R1.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R1_001.fastq.gz 5549023600 FASTQ S10_L003_R1 unaligned CPTAC3 53da8d54-81eb-4038-88b2-3196cb814a69 5f0301dca335ecbca6f6c7a81daa71b7 {"aliquot_tag": "ALQ_dc717704", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04728.RNA-Seq.S10_L003_R2.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R2_001.fastq.gz 5848132575 FASTQ S10_L003_R2 unaligned CPTAC3 872ca10d-39ab-43d2-a514-281d77055d1e 956bad92b3a6e4ebcf6440254973ce09 {"aliquot_tag": "ALQ_dc717704", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04728.RNA-Seq.transcriptome.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.transcriptome.gdc_realn.bam 14268836861 BAM transcriptome harmonized CPTAC3 aebb366a-380e-4469-b337-d629b131a4ad 0bb1d8d51062bc286396d9e7d7a5fd4e {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor"} -C3L-04728.WGS.N C3L-04728 LSCC WGS blood_normal CPT0305060002 CPT0305060002.WholeGenome.RP-2158.bam 21530141327 BAM aligned CPTAC3 bb954c13-7c4d-4098-8994-fce2233295e3 48def4e16c0dc836931c639a6fd66265 {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal"} -C3L-04728.WGS.N.hg38 C3L-04728 LSCC WGS blood_normal CPT0305060002 89c144d0-e672-49fe-aa42-b3f957230089_wgs_gdc_realn.bam 63433937050 BAM harmonized CPTAC3 6fb14feb-df82-4a97-aa74-fd1c460c89c2 b219d61cb468c2b87c76abfb2a678deb {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal"} -C3L-04728.WGS.T C3L-04728 LSCC WGS tumor CPT0304210006 CPT0304210006.WholeGenome.RP-2158.bam 25053735048 BAM aligned CPTAC3 b507c8f9-863c-470e-a8e8-b3b1743a13e0 6ad557444509bbf7e04befa26e8c37c1 {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor"} -C3L-04728.WGS.T.hg38 C3L-04728 LSCC WGS tumor CPT0304210006 774eea8f-1aca-4b74-b987-b20e71621cda_wgs_gdc_realn.bam 72794626135 BAM harmonized CPTAC3 28d030b8-d65f-4e55-be7b-cf10aafbd54b 943c11f56310c3e8234c0afaa08a74ee {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor"} -C3L-04728.WXS.N C3L-04728 LSCC WXS blood_normal CPT0305060002 CPT0305060002.WholeExome.RP-1303.bam 22684834998 BAM aligned CPTAC3 3441574b-3e9f-46ee-a40b-cddab978e1ce 02193c594900fedb42d6e9e51f873495 {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal"} -C3L-04728.WXS.N.hg38 C3L-04728 LSCC WXS blood_normal CPT0305060002 89c144d0-e672-49fe-aa42-b3f957230089_wxs_gdc_realn.bam 30949530959 BAM harmonized CPTAC3 b7856a20-f923-458e-9f77-0ad88a1f8cec 0337f1388347e82b33186d6bc280dfad {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal"} -C3L-04728.WXS.T C3L-04728 LSCC WXS tumor CPT0304210006 CPT0304210006.WholeExome.RP-1303.bam 23402829524 BAM aligned CPTAC3 777a095c-7981-4141-82d7-c2282900d6ac 32546cf79f5419c8f68e42a7e52fd41c {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor"} -C3L-04728.WXS.T.hg38 C3L-04728 LSCC WXS tumor CPT0304210006 774eea8f-1aca-4b74-b987-b20e71621cda_wxs_gdc_realn.bam 32219992369 BAM harmonized CPTAC3 70b75b48-32b4-4ccd-9ce6-80a326fbf594 c0acdf4b63c3254da6769e456820a221 {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor"} -C3L-04731.MethArray.Green.T C3L-04731 GBM Methylation_Array tumor CPT0258360006 204372030072_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1b3b805a-00cf-4ec5-ad0d-651d2012513f 4c8dbd7b08ea2fe314d6cb3999ced24d {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor"} -C3L-04731.MethArray.Red.T C3L-04731 GBM Methylation_Array tumor CPT0258360006 204372030072_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 1455c5d3-26c7-4671-b7ca-7946ec497ba0 3858f73ac87d4249f225c9a376600bf4 {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor"} -C3L-04731.miRNA-Seq.S2_L001_R1.T C3L-04731 GBM miRNA-Seq tumor CPT0258360009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 163649841 BAM S2_L001_R1 unaligned CPTAC3 7d68a4a1-186b-45cf-9842-1b93139f81aa 0e2fc6c3fc3d5e14cfe8ae54f9e7fe84 {"aliquot_tag": "ALQ_3d3608e2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04731.miRNA-Seq.T.hg38 C3L-04731 GBM miRNA-Seq tumor CPT0258360009 27acded0-fbca-4101-ad20-cbb61017cb78_mirnaseq_gdc_realn.bam 178901159 BAM harmonized CPTAC3 433f9cf1-b2ca-4468-8451-e0f3a6c74297 e6d4007dc049a2c716e7f3001299f31a {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor"} -C3L-04731.RNA-Seq.chimeric.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.chimeric.gdc_realn.bam 23548388 BAM chimeric harmonized CPTAC3 b16e3a89-2b59-47d3-bbfd-0edc8147ba4f bb5003555ce66c20c6c71d04534d8da4 {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor"} -C3L-04731.RNA-Seq.genomic.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.genomic.gdc_realn.bam 6525609441 BAM genomic harmonized CPTAC3 b5e0e9ab-cdc6-4ef0-a424-0a12f537e9c1 7c0f2f648362292824504bc27fa38241 {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor"} -C3L-04731.RNA-Seq.S18_L005_R1.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ S18_L005_R1 unaligned CPTAC3 fdcc07bb-3566-4ad0-b8af-832168038559 4a4e55f1119aa6ebdf20db0942ff41d1 {"aliquot_tag": "ALQ_3d3608e2", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04731.RNA-Seq.S18_L005_R2.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ S18_L005_R2 unaligned CPTAC3 d82e8a6e-aaca-4d9d-b26e-96046b568d10 41c80d9f58067ca57ae52b5923be8f69 {"aliquot_tag": "ALQ_3d3608e2", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04731.RNA-Seq.transcriptome.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.transcriptome.gdc_realn.bam 7196254642 BAM transcriptome harmonized CPTAC3 28587aac-0694-47c7-9b27-44f66f3eabc9 56ccb6763c27d338b56a5edc5150ca6e {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor"} -C3L-04731.WGS.N C3L-04731 GBM WGS blood_normal CPT0258420002 CPT0258420002.WholeGenome.RP-2158.bam 24023306337 BAM aligned CPTAC3 5bf7f78d-ac65-472b-b155-cc53b9de62b7 315efec8e111c62279fb3a5a9805ee87 {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal"} -C3L-04731.WGS.N.hg38 C3L-04731 GBM WGS blood_normal CPT0258420002 580da526-9175-4120-8b85-febc8c389b31_wgs_gdc_realn.bam 72428099741 BAM harmonized CPTAC3 d1a5f165-da82-4896-bd87-83d56f133baa a39015e0c347b175963ea7c94b769014 {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal"} -C3L-04731.WGS.T C3L-04731 GBM WGS tumor CPT0258360006 CPT0258360006.WholeGenome.RP-2158.bam 25501382330 BAM aligned CPTAC3 c18a3425-ebed-4e66-8bab-35f8bf4fcb29 a934642f7b3abef9bea83e736e18c9a4 {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor"} -C3L-04731.WGS.T.hg38 C3L-04731 GBM WGS tumor CPT0258360006 b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wgs_gdc_realn.bam 73442457570 BAM harmonized CPTAC3 487eb7fd-571b-4593-b357-bbb90037e3c8 54b3eb6740dd4bd8bdbd30b1780b5206 {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor"} -C3L-04731.WXS.N C3L-04731 GBM WXS blood_normal CPT0258420002 CPT0258420002.WholeExome.RP-1303.bam 35813867996 BAM aligned CPTAC3 42c91ebd-2a1f-4930-8383-b5e60d40a502 4ad2113cec871e682249d9837ed20d3d {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal"} -C3L-04731.WXS.N.hg38 C3L-04731 GBM WXS blood_normal CPT0258420002 580da526-9175-4120-8b85-febc8c389b31_wxs_gdc_realn.bam 48593782996 BAM harmonized CPTAC3 1fbd34a9-fc9d-4c2c-ba3b-96ffed456256 8418032c2ac0c9aef8c83e96e96217be {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal"} -C3L-04731.WXS.T C3L-04731 GBM WXS tumor CPT0258360006 CPT0258360006.WholeExome.RP-1303.bam 19673439486 BAM aligned CPTAC3 c4fe1c9a-c8ad-4d80-9f4e-f046c886dae5 a8efa9dbb7abd3bed9213d43d614688d {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor"} -C3L-04731.WXS.T.hg38 C3L-04731 GBM WXS tumor CPT0258360006 b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wxs_gdc_realn.bam 27379179694 BAM harmonized CPTAC3 b265dc17-8180-4962-8576-87cfde01f80d 46a6dfb7b0d1b6e6583f89080aba698e {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor"} -C3L-04746.MethArray.Green.A C3L-04746 LSCC Methylation_Array tissue_normal CPT0279080006 204372030024_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 a8825ca1-fb1e-48ec-9cd6-2131c70996c8 753dbabbaa9d60d63aebd8ccce6aa33b {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.MethArray.Green.T C3L-04746 LSCC Methylation_Array tumor CPT0279010009 204367490048_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 29d7154f-adc3-4363-950e-e79cfb89f50f ab18be313a2ea7fac3e3bdf9ca587b20 {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor"} -C3L-04746.MethArray.Red.A C3L-04746 LSCC Methylation_Array tissue_normal CPT0279080006 204372030024_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 3d44d3ca-ee6c-4bf4-965c-55ef379be7bf 3ba3ce1714c3c3c4b2d1d744b9328d22 {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.MethArray.Red.T C3L-04746 LSCC Methylation_Array tumor CPT0279010009 204367490048_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 3087468d-7579-490d-b0fb-d355c044b4f3 09b610eee6ce34ec37dfcf4fdaeff7eb {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor"} -C3L-04746.miRNA-Seq.A.hg38 C3L-04746 LSCC miRNA-Seq tissue_normal CPT0279080009 6a3d9456-8cc8-46ec-8c08-ffe28b3a39e3_mirnaseq_gdc_realn.bam 245529205 BAM harmonized CPTAC3 83191fc9-e0ab-48aa-8d4b-e1e311434ab5 4cbcdc92d54705747b805bc836daa69e {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.miRNA-Seq.S12_L007_R1.T C3L-04746 LSCC miRNA-Seq tumor CPT0279010013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GAGTGG_S12_L007_R1_001.unaln.bam 267646206 BAM S12_L007_R1 unaligned CPTAC3 1be13f42-714e-4730-9c70-be63f4571026 849a0e88d6ff71e26fc868eec32c115f {"aliquot_tag": "ALQ_141e72ca", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04746.miRNA-Seq.S6_L005_R1.A C3L-04746 LSCC miRNA-Seq tissue_normal CPT0279080009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATGTCA_S6_L005_R1_001.unaln.bam 222072342 BAM S6_L005_R1 unaligned CPTAC3 f9744b29-8882-4352-9ee4-409ef121a349 257767c2532bd0b807378c733038ef0e {"aliquot_tag": "ALQ_e0c0c8e4", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.miRNA-Seq.T.hg38 C3L-04746 LSCC miRNA-Seq tumor CPT0279010013 0b3b1933-2420-4ccd-82be-63b558395913_mirnaseq_gdc_realn.bam 288594484 BAM harmonized CPTAC3 96f481f5-3a99-49d9-98f3-cb4ada66922f f20249de167096fb3443a02a6db0548d {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor"} -C3L-04746.RNA-Seq.chimeric.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.chimeric.gdc_realn.bam 28814950 BAM chimeric harmonized CPTAC3 ce61d4b5-16db-47a2-bcf7-8034432d8e48 0d37163f61cd17f0722df5045acd0490 {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.RNA-Seq.chimeric.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.chimeric.gdc_realn.bam 76300959 BAM chimeric harmonized CPTAC3 6b7738bc-eabe-4494-9cb6-42064f2808e3 ed4683b61b764e180add6be89780aa72 {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor"} -C3L-04746.RNA-Seq.genomic.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.genomic.gdc_realn.bam 7327116810 BAM genomic harmonized CPTAC3 531ee9dd-78b9-4c21-a270-e21ebd9118f3 f49a26b07142048424fcb25b6af59bc7 {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.RNA-Seq.genomic.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.genomic.gdc_realn.bam 7883255906 BAM genomic harmonized CPTAC3 f6059728-89e8-4901-b95b-c9a4912cba03 13c3fd1c4a2d8956cfd2faaa367c07c4 {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor"} -C3L-04746.RNA-Seq.S15_L008_R1.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R1_001.fastq.gz 3452803753 FASTQ S15_L008_R1 unaligned CPTAC3 6fa7166d-8384-4103-8c9f-7f5088af16d5 f07c3f9a69e4083604b46d799458429a {"aliquot_tag": "ALQ_e0c0c8e4", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.RNA-Seq.S15_L008_R2.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R2_001.fastq.gz 3854339961 FASTQ S15_L008_R2 unaligned CPTAC3 65c5378d-ec10-4518-9bf3-f9c9ae0d0e1a 9fac4559a53bbddee125489b7ea44b72 {"aliquot_tag": "ALQ_e0c0c8e4", "sample": "S15", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.RNA-Seq.S21_L006_R1.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R1_001.fastq.gz 3686471434 FASTQ S21_L006_R1 unaligned CPTAC3 eff0d265-610e-4573-9937-6ce7611a7551 2900520527d13c4caac9b336bc82d88d {"aliquot_tag": "ALQ_141e72ca", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04746.RNA-Seq.S21_L006_R2.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R2_001.fastq.gz 4157452037 FASTQ S21_L006_R2 unaligned CPTAC3 e75763ef-0566-46a9-853e-347fcd83ee41 c8203ec697ed4da5ea77aed4097d4e10 {"aliquot_tag": "ALQ_141e72ca", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04746.RNA-Seq.transcriptome.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.transcriptome.gdc_realn.bam 7705591781 BAM transcriptome harmonized CPTAC3 f3f44b6f-09eb-4f00-9685-8624ad8303a8 8b5d9017f2a1204694e507ede330b913 {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.RNA-Seq.transcriptome.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.transcriptome.gdc_realn.bam 9393620648 BAM transcriptome harmonized CPTAC3 4989d874-315a-49e0-832b-9443b3cca92f ee7f44043431eed0f6ab9c2e91d32af8 {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor"} -C3L-04746.WGS.N C3L-04746 LSCC WGS blood_normal CPT0279170002 CPT0279170002.WholeGenome.RP-2158.bam 20565972778 BAM aligned CPTAC3 9853ceef-16c7-48d8-975d-ba1c0dfa6173 28d3948dc0eeab605340f3d40ed052e0 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal"} -C3L-04746.WGS.N.hg38 C3L-04746 LSCC WGS blood_normal CPT0279170002 5f8cfa01-07c2-4f48-ab0e-31ff66be67df_wgs_gdc_realn.bam 59978343142 BAM harmonized CPTAC3 0935491d-6a06-4602-977e-871773b588a6 460c2d0042d4a0294c7cae372c934086 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal"} -C3L-04746.WGS.T C3L-04746 LSCC WGS tumor CPT0279010009 CPT0279010009.WholeGenome.RP-2158.bam 23826429502 BAM aligned CPTAC3 b73d223c-517b-41cf-967a-355c01181b38 b6f9b60aa0b0011162cd21f8c44bacbc {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor"} -C3L-04746.WGS.T.hg38 C3L-04746 LSCC WGS tumor CPT0279010009 7c5f9092-ce2b-4a59-b8ed-f368774e6764_wgs_gdc_realn.bam 69496730556 BAM harmonized CPTAC3 801599dd-861c-45b1-8b8a-0796ff39e9a6 489d6720d1608cedda26ce15232a8e26 {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor"} -C3L-04746.WXS.A C3L-04746 LSCC WXS tissue_normal CPT0279080006 CPT0279080006.WholeExome.RP-1303.bam 38232874629 BAM aligned CPTAC3 bc5ae5ab-585e-4b9c-99cb-75a01cabccd7 f0fcf86d249ef01c77425f34ca3a847e {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.WXS.A.hg38 C3L-04746 LSCC WXS tissue_normal CPT0279080006 422a19ae-6222-439d-9c65-ac821135a61a_wxs_gdc_realn.bam 53064243475 BAM harmonized CPTAC3 cc48871d-ae2a-4bd0-95b3-a9bbfcf14f77 caebe992963f9852a05abda560d9bd2d {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04746.WXS.N C3L-04746 LSCC WXS blood_normal CPT0279170002 CPT0279170002.WholeExome.RP-1303.bam 21342680481 BAM aligned CPTAC3 df436629-2d6d-4892-9a03-d356f72c7981 fdacaf7a3b698a1c86f6a42ebfa55d38 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal"} -C3L-04746.WXS.N.hg38 C3L-04746 LSCC WXS blood_normal CPT0279170002 5f8cfa01-07c2-4f48-ab0e-31ff66be67df_wxs_gdc_realn.bam 29790309793 BAM harmonized CPTAC3 176d1c3b-1db7-4673-a4eb-98c4def67f56 bba4e552951bf776e9d1cf11a81f2887 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal"} -C3L-04746.WXS.T C3L-04746 LSCC WXS tumor CPT0279010009 CPT0279010009.WholeExome.RP-1303.bam 41988640464 BAM aligned CPTAC3 caa38563-2ef8-42ee-9b55-dc3c03bf70fd 1a569113609ec9b6052de12b8ec233df {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor"} -C3L-04746.WXS.T.hg38 C3L-04746 LSCC WXS tumor CPT0279010009 7c5f9092-ce2b-4a59-b8ed-f368774e6764_wxs_gdc_realn.bam 56730572467 BAM harmonized CPTAC3 631afdbd-49c7-4021-803d-4df579ad6881 54bd1d41c8d94ace36e10824eb64341b {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor"} -C3L-04749.MethArray.Green.A C3L-04749 LSCC Methylation_Array tissue_normal CPT0271400009 204367400087_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 425241c0-9d51-4160-8ef9-a6a1d44aa1c2 4b6c16046d9e8bdc15c3270ccd330b44 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.MethArray.Green.T C3L-04749 LSCC Methylation_Array tumor CPT0271380006 204372030076_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 13b928b8-5120-4186-a8e4-12e1e8449082 22cdb99b9e12a201a7a460e2769bfc0c {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor"} -C3L-04749.MethArray.Red.A C3L-04749 LSCC Methylation_Array tissue_normal CPT0271400009 204367400087_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 0272218e-56be-4985-b142-1da901f9a7c0 495181bf6d6d4a325d900136955d32e7 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.MethArray.Red.T C3L-04749 LSCC Methylation_Array tumor CPT0271380006 204372030076_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 7a2254ac-9b47-4885-8ce2-183c66406f43 91464d23f9a886b3897dbc2c9c2f4a08 {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor"} -C3L-04749.miRNA-Seq.A.hg38 C3L-04749 LSCC miRNA-Seq tissue_normal CPT0271400006 78b78ca1-df48-4b52-86eb-0a8170d61777_mirnaseq_gdc_realn.bam 275286965 BAM harmonized CPTAC3 697363af-0a8e-4935-be12-c3f47f459cf4 874b149999e818c9c54d2970ee286ca0 {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.miRNA-Seq.S17_L006_R1.T C3L-04749 LSCC miRNA-Seq tumor CPT0271380009 200224_UNC31-K00269_0267_AHC722BBXY_GTAGAG_S17_L006_R1_001.unaln.bam 181009156 BAM S17_L006_R1 unaligned CPTAC3 ec01ccc8-8b6b-4bc6-abdc-3e7413c63fb8 346205a506d73732d44227dd057e7fa6 {"aliquot_tag": "ALQ_55bbf42d", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04749.miRNA-Seq.S43_L006_R1.A C3L-04749 LSCC miRNA-Seq tissue_normal CPT0271400006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TACAGC_S43_L006_R1_001.unaln.bam 247431497 BAM S43_L006_R1 unaligned CPTAC3 b9e6c4a0-972a-4d3d-b390-2692804e0e77 e4383580ff26c10af5093003759b1db4 {"aliquot_tag": "ALQ_e87192c5", "sample": "S43", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.miRNA-Seq.T.hg38 C3L-04749 LSCC miRNA-Seq tumor CPT0271380009 784f5baf-ffdb-4e82-a17e-c00621ec0944_mirnaseq_gdc_realn.bam 200820385 BAM harmonized CPTAC3 965c0262-f225-4fa1-a1e7-6544b0abe5f6 b5cb21595c7273105cd5bf23cdc1f1ae {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor"} -C3L-04749.RNA-Seq.chimeric.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.chimeric.gdc_realn.bam 25537797 BAM chimeric harmonized CPTAC3 25c610f1-9d74-46a9-a249-34adedb9e689 4c0012f01726f086ecebde7bc9588240 {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.RNA-Seq.chimeric.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.chimeric.gdc_realn.bam 55848955 BAM chimeric harmonized CPTAC3 71537e85-3722-4d39-a141-2abb7cef3ee1 f08013833391ec59d665b707c7cd8266 {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor"} -C3L-04749.RNA-Seq.genomic.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.genomic.gdc_realn.bam 7208850821 BAM genomic harmonized CPTAC3 e1ccd9ee-3b8d-4cd9-9599-22bfb378fa4d 4a4a0040d48b5b4adbc24be3665e154b {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.RNA-Seq.genomic.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.genomic.gdc_realn.bam 8409087059 BAM genomic harmonized CPTAC3 85f44a04-a58c-4734-b18c-7de4e45173cb 34e542f11741048e25bf74665955c1a4 {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor"} -C3L-04749.RNA-Seq.S1_L001_R1.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R1_001.fastq.gz 3912060536 FASTQ S1_L001_R1 unaligned CPTAC3 9851d22e-75a3-4685-92f4-fceddb612a0c 956466fec5e50287c68ea89e64d26ef0 {"aliquot_tag": "ALQ_55bbf42d", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04749.RNA-Seq.S1_L001_R2.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R2_001.fastq.gz 4338079910 FASTQ S1_L001_R2 unaligned CPTAC3 1e23a930-3a62-4de6-ac26-2d39621847ec 32ffd599c14cd6676bc42c81f40ff12b {"aliquot_tag": "ALQ_55bbf42d", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04749.RNA-Seq.S25_L007_R1.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R1_001.fastq.gz 3309872976 FASTQ S25_L007_R1 unaligned CPTAC3 d1935c39-b390-43d3-87d4-1fd3e222096c 5cab4015e3ecb50e3d0484e43dd9e6cf {"aliquot_tag": "ALQ_e87192c5", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.RNA-Seq.S25_L007_R2.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R2_001.fastq.gz 3968764367 FASTQ S25_L007_R2 unaligned CPTAC3 c4da1660-db14-4679-955a-499096ee0978 21fb919bff4847231f9579f8d7fcd809 {"aliquot_tag": "ALQ_e87192c5", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.RNA-Seq.transcriptome.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.transcriptome.gdc_realn.bam 8695779514 BAM transcriptome harmonized CPTAC3 2a29ac17-47fb-476e-8e0b-14bce6b30d41 6a76be2366c1866ad7dbc8313c913441 {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.RNA-Seq.transcriptome.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.transcriptome.gdc_realn.bam 10222721424 BAM transcriptome harmonized CPTAC3 ac826f9a-8903-4761-a362-85d788fe48eb cbdd808d03e8d3d721025aafef34d691 {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor"} -C3L-04749.WGS.N C3L-04749 LSCC WGS blood_normal CPT0271470002 CPT0271470002.WholeGenome.RP-2158.bam 24821097773 BAM aligned CPTAC3 d9735d16-e7c4-4090-9ca7-8ccf3a1a9901 b9b17b42ee90d01c1b4703e4aec23283 {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04749.WGS.N.hg38 C3L-04749 LSCC WGS blood_normal CPT0271470002 537b8662-9f16-462d-85f1-2517912d16f0_wgs_gdc_realn.bam 75596498859 BAM harmonized CPTAC3 948bad93-2b50-452c-bc20-fbaf4d175be2 96b49d70a9a93a1b53ddd87ee4a8e4e3 {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04749.WGS.T C3L-04749 LSCC WGS tumor CPT0271380006 CPT0271380006.WholeGenome.RP-2158.bam 23997719812 BAM aligned CPTAC3 24b1eb69-3e2f-49b0-82a4-354e03aa9ecb f343e6b2c044f4a144582108343a20ad {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor"} -C3L-04749.WGS.T.hg38 C3L-04749 LSCC WGS tumor CPT0271380006 05c2e83b-4061-4cbe-825f-2fb99b325dae_wgs_gdc_realn.bam 70736499492 BAM harmonized CPTAC3 f13d050a-7955-4d6f-82ad-81b11335cdb9 5ee249674e2b064033f2baec3d8981fa {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor"} -C3L-04749.WXS.A C3L-04749 LSCC WXS tissue_normal CPT0271400009 CPT0271400009.WholeExome.RP-1303.bam 23166405711 BAM aligned CPTAC3 deea33fc-fc78-4f86-a950-cb4ee5bc8c79 39d31ef256dccad29d47e873bc308c37 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.WXS.A.hg38 C3L-04749 LSCC WXS tissue_normal CPT0271400009 684310d4-a1c5-4ade-be4d-e38eb812e777_wxs_gdc_realn.bam 32038467784 BAM harmonized CPTAC3 4977b4c9-aa9c-4d85-83af-9da820d823d2 09edaff489471161974e2a7241f78448 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04749.WXS.N C3L-04749 LSCC WXS blood_normal CPT0271470002 CPT0271470002.WholeExome.RP-1303.bam 29988252705 BAM aligned CPTAC3 c5699ea9-1ea8-411d-be94-5f3caf7ff7cc b9572ba0e171575c31a4c6c44a1f663e {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04749.WXS.N.hg38 C3L-04749 LSCC WXS blood_normal CPT0271470002 537b8662-9f16-462d-85f1-2517912d16f0_wxs_gdc_realn.bam 40152529449 BAM harmonized CPTAC3 5a04c54a-46c6-4b22-9f57-e957bab13f58 b0587e06396e20151448ded07aa4436a {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal"} -C3L-04749.WXS.T C3L-04749 LSCC WXS tumor CPT0271380006 CPT0271380006.WholeExome.RP-1303.bam 22618528518 BAM aligned CPTAC3 6fcafbb7-a541-42be-8a6f-f0a3bccea7ad 75df575a838237273a28a313f87fce17 {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor"} -C3L-04749.WXS.T.hg38 C3L-04749 LSCC WXS tumor CPT0271380006 05c2e83b-4061-4cbe-825f-2fb99b325dae_wxs_gdc_realn.bam 30716597873 BAM harmonized CPTAC3 ae75aed4-2200-4897-a3b5-a6c86ecd93bc 0854e2208c074082bb65e7723a099b58 {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor"} -C3L-04757.MethArray.Green.A C3L-04757 LUAD Methylation_Array tissue_normal CPT0255080006 203561620077_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b06e669b-11f8-4e29-8d33-dfd1cc060a40 67f45a22699550c1d763f826ca3fc4ac {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.MethArray.Green.T C3L-04757 LUAD Methylation_Array tumor CPT0255050006 203561450008_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a4377fdc-f9f4-4d08-a587-0b3c21ce8259 3079e46cc76833904ecb4446e8cf7758 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor"} -C3L-04757.MethArray.Red.A C3L-04757 LUAD Methylation_Array tissue_normal CPT0255080006 203561620077_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 b822899d-163b-4a64-af1d-b2505db1fcdc 4a23ddf862049baae7b55a54770d7918 {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.MethArray.Red.T C3L-04757 LUAD Methylation_Array tumor CPT0255050006 203561450008_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 ac4300d4-d3f2-4388-b4ba-31ab73976915 4d4c232257addf9a1e052578f16e0bb9 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor"} -C3L-04757.miRNA-Seq.A.hg38 C3L-04757 LUAD miRNA-Seq tissue_normal CPT0255080009 1a315b40-cf81-472d-9427-98dee79e74c0_mirnaseq_gdc_realn.bam 196918183 BAM harmonized CPTAC3 fc545074-8a8c-4239-992d-c4c70396dd61 245aacd5564721310172746d53693ea5 {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.miRNA-Seq.S36_L006_R1.A C3L-04757 LUAD miRNA-Seq tissue_normal CPT0255080009 190722_UNC31-K00269_0234_AH7VGTBBXY_TACAGC_S36_L006_R1_001.unaln.bam 174543760 BAM S36_L006_R1 unaligned CPTAC3 da754e9e-1fa9-4dd9-83c0-e8c85f77e508 7d3a1b43329536b7fc56bd0fe9317152 {"aliquot_tag": "ALQ_6545a5ed", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.miRNA-Seq.S44_L007_R1.T C3L-04757 LUAD miRNA-Seq tumor CPT0255050009 190722_UNC31-K00269_0234_AH7VGTBBXY_TGACCA_S44_L007_R1_001.unaln.bam 200111670 BAM S44_L007_R1 unaligned CPTAC3 29a78cce-fc3c-4437-824d-940fce1942e6 e4e6b737645a07dcadd628cd080f61d3 {"aliquot_tag": "ALQ_9dd5615c", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04757.miRNA-Seq.T.hg38 C3L-04757 LUAD miRNA-Seq tumor CPT0255050009 a221a74e-d7fe-4bab-9c68-df41ea69c2dc_mirnaseq_gdc_realn.bam 215731392 BAM harmonized CPTAC3 1348404e-d449-4280-95f9-9c2ca885d336 46aef98444932475d971335c92fb8e16 {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor"} -C3L-04757.RNA-Seq.chimeric.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.chimeric.gdc_realn.bam 29740257 BAM chimeric harmonized CPTAC3 6f8dface-5570-449a-b6bf-61834153a141 9e4211db8ae095f0bfacae9a17486152 {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.RNA-Seq.chimeric.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.chimeric.gdc_realn.bam 37375192 BAM chimeric harmonized CPTAC3 3bf19083-c74f-4033-8bb5-956033735cab f907f68c93df9b51e7a0f6437f26ffba {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor"} -C3L-04757.RNA-Seq.genomic.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.genomic.gdc_realn.bam 9993317059 BAM genomic harmonized CPTAC3 ba026fe6-10d2-471a-86c7-b9a546fad096 ac33c6fc201ceb81191c38412dd0d6ae {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.RNA-Seq.genomic.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.genomic.gdc_realn.bam 9084569673 BAM genomic harmonized CPTAC3 e94fdeb6-a84f-4b80-bd17-04695862d3c1 0597c844410ce8c606e5bbe40c65c5b5 {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor"} -C3L-04757.RNA-Seq.S26_L007_R1.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R1_001.fastq.gz 4127971199 FASTQ S26_L007_R1 unaligned CPTAC3 d6c9218c-2163-4bda-adec-e85ebb276e8b fb6dda7397752766f8e0b9c4abd5627a {"aliquot_tag": "ALQ_9dd5615c", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04757.RNA-Seq.S26_L007_R2.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R2_001.fastq.gz 4618961349 FASTQ S26_L007_R2 unaligned CPTAC3 e87b26c8-71d5-4ffe-81e1-d01202914df5 e621e3eaaaa08f538710c8b6084a09b6 {"aliquot_tag": "ALQ_9dd5615c", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04757.RNA-Seq.S7_L002_R1.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3401806951 FASTQ S7_L002_R1 unaligned CPTAC3 a14c65eb-d876-4222-884c-8c05b9831a1f 53f91dce6ca886e8eec1ac04a7470b34 {"aliquot_tag": "ALQ_6545a5ed", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.RNA-Seq.S7_L002_R2.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 3893884814 FASTQ S7_L002_R2 unaligned CPTAC3 ddb13b87-04eb-4bd3-8edc-f9f053285664 170f85d1bbe7f19ec204a6c9e2c1b50e {"aliquot_tag": "ALQ_6545a5ed", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.RNA-Seq.transcriptome.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.transcriptome.gdc_realn.bam 7304283762 BAM transcriptome harmonized CPTAC3 0e17b885-e8ea-4c2c-aa11-f337331d05db aec9ca8aef2e1cf03247824a7f4db85d {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.RNA-Seq.transcriptome.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.transcriptome.gdc_realn.bam 10666666212 BAM transcriptome harmonized CPTAC3 d5aca2c2-739a-4f98-af68-6bf30551447d 43738b211a4e6f50274bda885a34e728 {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor"} -C3L-04757.WGS.N C3L-04757 LUAD WGS blood_normal CPT0255190002 CPT0255190002.WholeGenome.RP-1303.bam 66407153660 BAM aligned CPTAC3 14e3b249-1759-406d-9804-6abd38fb4e44 7caace0ee6c9cb91fc12c9152a67754f {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal"} -C3L-04757.WGS.N.hg38 C3L-04757 LUAD WGS blood_normal CPT0255190002 1049f508-fe3c-4359-b14a-d38c47dcb7ba_wgs_gdc_realn.bam 97311162997 BAM harmonized CPTAC3 622c8bbc-4f6e-4368-aad0-015fc56a074c f10f6991e5fb267abc91f14f1e566a35 {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal"} -C3L-04757.WGS.T C3L-04757 LUAD WGS tumor CPT0255050006 CPT0255050006.WholeGenome.RP-1303.bam 60442985525 BAM aligned CPTAC3 bfa14851-0bc7-49f2-b0c8-3e607ab6901c cbf3a796935d5815b98b34ff23416627 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor"} -C3L-04757.WGS.T.hg38 C3L-04757 LUAD WGS tumor CPT0255050006 21adbed6-c6b0-4b46-8a76-bdb0670be9ba_wgs_gdc_realn.bam 89542948262 BAM harmonized CPTAC3 34305f06-2a3d-4e58-9625-3e051b9cb648 de7d809d499b020fa098dab0c7e676a1 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor"} -C3L-04757.WXS.A C3L-04757 LUAD WXS tissue_normal CPT0255080006 CPT0255080006.WholeExome.RP-1303.bam 23557028822 BAM aligned CPTAC3 61a880fb-c2a3-479f-bb0d-4793bd50ed13 111a93cd8d9528918063733b4ec4fff9 {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.WXS.A.hg38 C3L-04757 LUAD WXS tissue_normal CPT0255080006 bd23437a-226c-41a0-aeb7-167c2cb4fc49_wxs_gdc_realn.bam 32753888601 BAM harmonized CPTAC3 ed99b033-b0e3-4ac4-b567-3b3366f486f5 1bef8b1754cf75dfa96161541b29cd42 {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04757.WXS.N C3L-04757 LUAD WXS blood_normal CPT0255190002 CPT0255190002.WholeExome.RP-1303.bam 27698273600 BAM aligned CPTAC3 7c0638e9-1e32-455c-81dd-cc68dfb3af05 1722729ef3494ba1b808321630d0d377 {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal"} -C3L-04757.WXS.N.hg38 C3L-04757 LUAD WXS blood_normal CPT0255190002 1049f508-fe3c-4359-b14a-d38c47dcb7ba_wxs_gdc_realn.bam 38138877739 BAM harmonized CPTAC3 73164e58-3cba-4a7a-a6ab-a37395c5ebe4 7cdf5bb6c671a41c72232842ee56bd2d {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal"} -C3L-04757.WXS.T C3L-04757 LUAD WXS tumor CPT0255050006 CPT0255050006.WholeExome.RP-1303.bam 22650638400 BAM aligned CPTAC3 423d6ca9-cea0-466f-be8e-94462867af69 3c4ed96ba8f8f594b817745962ab33ed {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor"} -C3L-04757.WXS.T.hg38 C3L-04757 LUAD WXS tumor CPT0255050006 21adbed6-c6b0-4b46-8a76-bdb0670be9ba_wxs_gdc_realn.bam 31766161952 BAM harmonized CPTAC3 f912f910-33c2-4d2c-9796-675563706221 88004c8836b9703e140cb7e4b8226873 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor"} -C3L-04759.MethArray.Green.A C3L-04759 LUAD Methylation_Array tissue_normal CPT0249940007 203561450054_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 46a6201d-1465-4280-b31b-e5fcc4918849 3142edd6fe4c3be4283d7042f8f40769 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.MethArray.Green.T C3L-04759 LUAD Methylation_Array tumor CPT0249890007 203561620050_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9466bb30-a798-4774-9745-44b1b4448c6f 6487566d1b3f576709eb42ebf27aad14 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor"} -C3L-04759.MethArray.Red.A C3L-04759 LUAD Methylation_Array tissue_normal CPT0249940007 203561450054_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 32812dbc-e60e-4f1f-bb05-cb8325b5986b 38264eb49464df85a70c0e8705681191 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.MethArray.Red.T C3L-04759 LUAD Methylation_Array tumor CPT0249890007 203561620050_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 77959498-7786-4d4f-a220-c8fa3e61a982 dc74c25c152e9b337ffa0f4757a8d1d0 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor"} -C3L-04759.miRNA-Seq.A.hg38 C3L-04759 LUAD miRNA-Seq tissue_normal CPT0249940010 5dd48377-2a11-48eb-843b-6360f991312c_mirnaseq_gdc_realn.bam 218962378 BAM harmonized CPTAC3 7069b19e-0903-4fe1-bdcd-034e1291f2d5 71fd9675b3d13f24291a3e3df57fd004 {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.miRNA-Seq.S1_L006_R1.T C3L-04759 LUAD miRNA-Seq tumor CPT0249890010 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L006_R1_001.unaln.bam 260982952 BAM S1_L006_R1 unaligned CPTAC3 6fa305d2-5603-4641-982c-a6a15aca34f6 9d92ecc29090c5d39c69c374258a0c4f {"aliquot_tag": "ALQ_dfbbed3f", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04759.miRNA-Seq.S2_L006_R1.A C3L-04759 LUAD miRNA-Seq tissue_normal CPT0249940010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGAGC_S2_L006_R1_001.unaln.bam 191308132 BAM S2_L006_R1 unaligned CPTAC3 ce4e6d87-4ebb-4387-9c5f-f9cf20180cb3 a6e032f10e213fd1ffaf979ed2ec26a7 {"aliquot_tag": "ALQ_ec77fa2b", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.miRNA-Seq.T.hg38 C3L-04759 LUAD miRNA-Seq tumor CPT0249890010 9c0cb6e5-2e97-492c-b648-40a5bcc1891c_mirnaseq_gdc_realn.bam 290544593 BAM harmonized CPTAC3 3d39cf0c-7ca3-40a6-b09d-6e941accd06a 71fa174b170c50b2e571fe1e821d1ab8 {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor"} -C3L-04759.RNA-Seq.chimeric.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.chimeric.gdc_realn.bam 44252433 BAM chimeric harmonized CPTAC3 8ade85d0-d054-4f2c-9764-45a7ce5b9c57 fd81b6e7a7dac20e13683b41783180d1 {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.RNA-Seq.chimeric.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.chimeric.gdc_realn.bam 52313101 BAM chimeric harmonized CPTAC3 002148fa-76d0-4150-b627-e57d2e34ef87 d7c75da7dbc9f926de2124d08435e27d {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor"} -C3L-04759.RNA-Seq.genomic.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.genomic.gdc_realn.bam 7279958837 BAM genomic harmonized CPTAC3 22893fce-2287-4d5a-9fcd-71062bbeb3c5 8e29d9911288eb990eb6095ddfacd439 {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.RNA-Seq.genomic.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.genomic.gdc_realn.bam 9631928475 BAM genomic harmonized CPTAC3 1ce7b50d-3d52-41b1-ac03-e0309f979484 722ef47430c24d0218bbff1e525b0036 {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor"} -C3L-04759.RNA-Seq.S26_L007_R1.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R1_001.fastq.gz 4031740242 FASTQ S26_L007_R1 unaligned CPTAC3 d2c086bc-623f-4a23-9cb3-80c53b597f24 da57886c47c7db44a92936ef14e62aaa {"aliquot_tag": "ALQ_dfbbed3f", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04759.RNA-Seq.S26_L007_R2.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R2_001.fastq.gz 4397666777 FASTQ S26_L007_R2 unaligned CPTAC3 848e757d-af1a-4b7a-b260-3551cbf21d80 b2fd6b25dbb0595622197b087ae52b05 {"aliquot_tag": "ALQ_dfbbed3f", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04759.RNA-Seq.S27_L007_R1.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R1_001.fastq.gz 3013248187 FASTQ S27_L007_R1 unaligned CPTAC3 e9fa0ea6-afa8-4429-8324-8804424c2b97 9a553ac7634aff96e709c69b1d233d7a {"aliquot_tag": "ALQ_ec77fa2b", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.RNA-Seq.S27_L007_R2.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R2_001.fastq.gz 3386143896 FASTQ S27_L007_R2 unaligned CPTAC3 6beda164-3c9d-4cda-8f28-d235c978c091 51db0b399df6faa998e554f0aa19b6c5 {"aliquot_tag": "ALQ_ec77fa2b", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.RNA-Seq.transcriptome.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.transcriptome.gdc_realn.bam 6491168167 BAM transcriptome harmonized CPTAC3 a69328c8-ace0-432b-9f83-fc4fb3e61ea7 4f637052ec0816bac99c4bc629dfaf0b {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.RNA-Seq.transcriptome.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.transcriptome.gdc_realn.bam 8784251544 BAM transcriptome harmonized CPTAC3 e3dca406-6564-4a8d-ac66-92a105a78cc4 c6945c6ffe21984794cd8ea23eeb2d0d {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor"} -C3L-04759.WGS.N C3L-04759 LUAD WGS blood_normal CPT0250040002 CPT0250040002.WholeGenome.RP-1303.bam 75419038537 BAM aligned CPTAC3 e5fdb8ed-9aab-4c39-9b30-9be6a98b0506 1366bf92112d86611e2f8618edff8962 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04759.WGS.N.hg38 C3L-04759 LUAD WGS blood_normal CPT0250040002 f0520344-6377-4462-862f-581f5f45a641_wgs_gdc_realn.bam 109840848525 BAM harmonized CPTAC3 44924c91-e101-4a04-bb4a-1f386d8ad368 c39abe055e2a2e80d4d4c0290ac0e2a6 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04759.WGS.T C3L-04759 LUAD WGS tumor CPT0249890007 CPT0249890007.WholeGenome.RP-1303.bam 89079189823 BAM aligned CPTAC3 e6d0233c-6478-40a5-97eb-951a2bdebf4f 349fa2e194f00f39f66db913609d7453 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor"} -C3L-04759.WGS.T.hg38 C3L-04759 LUAD WGS tumor CPT0249890007 5fc49ef3-8cdd-493c-846d-23ce0178019a_wgs_gdc_realn.bam 130962694159 BAM harmonized CPTAC3 b257bc19-7dcf-456b-9392-9187805a8af0 bd075b394b06bfe20e72757bc70da201 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor"} -C3L-04759.WXS.A C3L-04759 LUAD WXS tissue_normal CPT0249940007 CPT0249940007.WholeExome.RP-1303.bam 23720859346 BAM aligned CPTAC3 58934e3d-1e3f-49ff-8e9a-cce0dc5590e0 405ea5a958397a8c10cd6c31345ccdc2 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.WXS.A.hg38 C3L-04759 LUAD WXS tissue_normal CPT0249940007 9d526aac-fd28-49b2-a817-14bcadfbdbf0_wxs_gdc_realn.bam 32913262076 BAM harmonized CPTAC3 84e0d9dc-4d6a-45bf-a72f-15f83c762ab3 4dedd81d7c9dc29f61469acef9c07494 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04759.WXS.N C3L-04759 LUAD WXS blood_normal CPT0250040002 CPT0250040002.WholeExome.RP-1303.bam 21178495432 BAM aligned CPTAC3 ca028f3a-7bdb-4752-96c3-108bab1e710d ea1788faecd65e041e262e96aac35db9 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04759.WXS.N.hg38 C3L-04759 LUAD WXS blood_normal CPT0250040002 f0520344-6377-4462-862f-581f5f45a641_wxs_gdc_realn.bam 29292053601 BAM harmonized CPTAC3 857d5e77-fb80-45a8-86d5-b2e15ae3f8ea 0c29660a14f4d294b3170e7c7afae819 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04759.WXS.T C3L-04759 LUAD WXS tumor CPT0249890007 CPT0249890007.WholeExome.RP-1303.bam 20176087719 BAM aligned CPTAC3 a67b06cd-8264-49c9-acd8-5d4fa1155a1e 12fd125f9f8a54149bdda494bc0ca25b {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor"} -C3L-04759.WXS.T.hg38 C3L-04759 LUAD WXS tumor CPT0249890007 5fc49ef3-8cdd-493c-846d-23ce0178019a_wxs_gdc_realn.bam 27838659612 BAM harmonized CPTAC3 db2c016d-d894-4b43-b668-6408130899cc bacf325f26359865cfd5c9333ec2020a {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor"} -C3L-04761.MethArray.Green.Tbm C3L-04761 AML Methylation_Array tumor_bone_marrow CPT0302830002 205555390128_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 02daaf58-e637-4e91-b425-8da11e47b09c a259b1d2c6e804cc8e3cfa5243ed6396 {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.MethArray.Red.Tbm C3L-04761 AML Methylation_Array tumor_bone_marrow CPT0302830002 205555390128_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 1c32839b-7ade-4084-ab77-3306012f70cd 00b972952c3032fd218167967fa3dcaf {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.miRNA-Seq.S40_L008_R1.Tbm C3L-04761 AML miRNA-Seq tumor_bone_marrow CPT0302840002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACCGG_S40_L008_R1_001.unaln.bam 276727312 BAM S40_L008_R1 unaligned CPTAC3 deb54249-aec2-4590-a4ca-cbef26368ccb 20a897b8b4f259dcbb2296688153b4c8 {"aliquot_tag": "ALQ_410837a0", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.miRNA-Seq.Tbm.hg38 C3L-04761 AML miRNA-Seq tumor_bone_marrow CPT0302840002 7918e895-5222-4075-97e4-1f958c46215f_mirnaseq_gdc_realn.bam 300180783 BAM harmonized CPTAC3 74981bb8-840d-48fd-96e5-5508f156cdd5 82a5f1709a2b5910f48f62da427954a7 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.RNA-Seq.chimeric.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.chimeric.gdc_realn.bam 162879915 BAM chimeric harmonized CPTAC3 203cff96-0499-45f6-bbcd-290c266d5573 ba44035899af3ca56b31f30dc35c29f8 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.RNA-Seq.genomic.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.genomic.gdc_realn.bam 7585660971 BAM genomic harmonized CPTAC3 111f4051-83dc-4226-a909-2a29c7f205ce b83e44920fb1a8eb5f38c89ea39ef649 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.RNA-Seq.S2_L001_R1.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R1_001.fastq.gz 3682020335 FASTQ S2_L001_R1 unaligned CPTAC3 f15b85cd-4f59-420d-b186-8cc631e57b4b 6da78c1e4c5a07ac100a59181b6ae2e8 {"aliquot_tag": "ALQ_410837a0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.RNA-Seq.S2_L001_R2.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R2_001.fastq.gz 4158910002 FASTQ S2_L001_R2 unaligned CPTAC3 2986dc61-29bb-4478-9a20-d37b350606cd 36646a731ed3ab23d3aa6ec1cac0ab9f {"aliquot_tag": "ALQ_410837a0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.RNA-Seq.transcriptome.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.transcriptome.gdc_realn.bam 9359104723 BAM transcriptome harmonized CPTAC3 d93a783d-6abe-4d8e-bd45-5b3eb51f9ddf 50208d56c9fc0f87f3282f2a37404f79 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.WGS.Nbc C3L-04761 AML WGS buccal_normal CPT0302950003 CPT0302950003.WholeGenome.RP-2158.bam 55420012058 BAM aligned CPTAC3 452eb9dc-89fd-401f-a389-3ea2a782a488 364b0b5db7839af191ddc00d565026c1 {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04761.WGS.Nbc.hg38 C3L-04761 AML WGS buccal_normal CPT0302950003 4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wgs_gdc_realn.bam 166004693494 BAM harmonized CPTAC3 7b5193f4-61e1-40fd-97f0-eccf74fa790c ce8a586ff53802b17e304d4252a7d20b {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04761.WGS.Tbm C3L-04761 AML WGS tumor_bone_marrow CPT0302830002 CPT0302830002.WholeGenome.RP-2158.bam 48791746622 BAM aligned CPTAC3 0856e8b1-df94-4a06-a626-5000dc337cd5 7cd92d159ddeeb9162f19ce59361230f {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.WGS.Tbm.hg38 C3L-04761 AML WGS tumor_bone_marrow CPT0302830002 7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wgs_gdc_realn.bam 140037712642 BAM harmonized CPTAC3 3d065aa6-d8f3-42d3-b435-63d257e95504 89d53348addc1819079af2d0bf14c95c {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.WXS.Nbc C3L-04761 AML WXS buccal_normal CPT0302950003 CPT0302950003.WholeExome.RP-1303.bam 15987418999 BAM aligned CPTAC3 1821e3aa-e16a-4a89-bda7-089cda0957b7 07debb4adbe200e9f7dc84d77217157c {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04761.WXS.Nbc.hg38 C3L-04761 AML WXS buccal_normal CPT0302950003 4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wxs_gdc_realn.bam 22169092016 BAM harmonized CPTAC3 a5e9a55d-077a-474e-9e46-634e8a9e1090 dae268c19e8036d88c7085048b25d4db {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04761.WXS.Tbm C3L-04761 AML WXS tumor_bone_marrow CPT0302830002 CPT0302830002.WholeExome.RP-1303.bam 22552836245 BAM aligned CPTAC3 1ff262f2-213a-45b5-88cc-8931650733d1 96daf50bd81a775f41a148cec2eddba6 {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04761.WXS.Tbm.hg38 C3L-04761 AML WXS tumor_bone_marrow CPT0302830002 7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wxs_gdc_realn.bam 31278135701 BAM harmonized CPTAC3 b47e314b-a40f-4a49-95b7-ae1bf7674558 192c5c3c27f5db44526ad0ee2d048b43 {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.MethArray.Green.Tbm C3L-04763 AML Methylation_Array tumor_bone_marrow CPT0303110002 205555380136_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6b196c75-c182-4b3e-9d84-642753a2dd72 333e14584bbbe66d9bd61ab3a6e80e37 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.MethArray.Red.Tbm C3L-04763 AML Methylation_Array tumor_bone_marrow CPT0303110002 205555380136_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 e5516d6b-f3ad-4e9f-a4d2-2affc37ba969 a8583f177d584dbe3286decccce2ebd0 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.miRNA-Seq.S42_L008_R1.Tbm C3L-04763 AML miRNA-Seq tumor_bone_marrow CPT0303120002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACTCA_S42_L008_R1_001.unaln.bam 138877284 BAM S42_L008_R1 unaligned CPTAC3 d9cdec1d-8e02-453c-a957-cfe4b47c9819 5d3c2c8038d89e390c70b2eca012f09d {"aliquot_tag": "ALQ_4f30987c", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.miRNA-Seq.Tbm.hg38 C3L-04763 AML miRNA-Seq tumor_bone_marrow CPT0303120002 01807494-68bb-4dd9-850c-f6d219938a50_mirnaseq_gdc_realn.bam 150347625 BAM harmonized CPTAC3 f393c9d0-e04e-4b18-a030-74d39edfe739 381c00d8e00a5999b3d493ea3e3de21d {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.RNA-Seq.chimeric.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.chimeric.gdc_realn.bam 205297609 BAM chimeric harmonized CPTAC3 cf466dea-fca0-4326-9c48-5d6a07c88027 b34be18ec55c289fc1e6697de22f07af {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.RNA-Seq.genomic.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.genomic.gdc_realn.bam 7265645962 BAM genomic harmonized CPTAC3 42b3ad09-8999-4847-9167-00c832aa5f70 54b9674d166ec4425634d6cd4b368d07 {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.RNA-Seq.S3_L001_R1.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 3438040411 FASTQ S3_L001_R1 unaligned CPTAC3 c3a9b183-700e-4ae3-adc2-0ffade837bf0 786e852b7841d806480bc2000671308d {"aliquot_tag": "ALQ_4f30987c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.RNA-Seq.S3_L001_R2.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 3810935126 FASTQ S3_L001_R2 unaligned CPTAC3 ab31f876-7f37-41c3-960e-43702282f5be cc9a6cf3dd2b0625e8a214ba8a1d8eef {"aliquot_tag": "ALQ_4f30987c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.RNA-Seq.transcriptome.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.transcriptome.gdc_realn.bam 6968798058 BAM transcriptome harmonized CPTAC3 b39b158f-f301-4222-8854-3bbe03a945ee 356b03577ab48ccfc8274367a43ed563 {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.WGS.Nbc C3L-04763 AML WGS buccal_normal CPT0303300001 CPT0303300001.WholeGenome.RP-2158.bam 50446856202 BAM aligned CPTAC3 f2517931-f731-45d6-9c36-78f975b2e353 0649a2ec90c3e9ce929740d615625a2b {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04763.WGS.Nbc.hg38 C3L-04763 AML WGS buccal_normal CPT0303300001 326fbc29-721b-40cb-b508-a0256dc1cd08_wgs_gdc_realn.bam 156462698691 BAM harmonized CPTAC3 14184470-cfa5-412b-8fd5-87bc5d88068f e0a3ecb224dbe434040753e831192df6 {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04763.WGS.Tbm C3L-04763 AML WGS tumor_bone_marrow CPT0303110002 CPT0303110002.WholeGenome.RP-2158.bam 46925630457 BAM aligned CPTAC3 a35c2354-aa04-4d12-9564-27a55990b864 b721e82a92ffa854a2162903efcb76ad {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.WGS.Tbm.hg38 C3L-04763 AML WGS tumor_bone_marrow CPT0303110002 cc6720e2-8526-42f4-b384-e5e63f62aae5_wgs_gdc_realn.bam 141648633992 BAM harmonized CPTAC3 5b2dc5b0-dc90-4b22-8713-041c60b5ca3f 83d5b515ea6ec7158f294494adb81b13 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.WXS.Nbc C3L-04763 AML WXS buccal_normal CPT0303300001 CPT0303300001.WholeExome.RP-1303.bam 29577172174 BAM aligned CPTAC3 d0fd167a-07b4-4da0-bd06-60fe92fbc5c1 eef642e962a3d6eaa7dc792f6d30da8b {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04763.WXS.Nbc.hg38 C3L-04763 AML WXS buccal_normal CPT0303300001 326fbc29-721b-40cb-b508-a0256dc1cd08_wxs_gdc_realn.bam 39394401609 BAM harmonized CPTAC3 ba2e573c-d870-40df-9413-ab7dd13caa74 c56950156e70b85a74de615cb82b649b {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04763.WXS.Tbm C3L-04763 AML WXS tumor_bone_marrow CPT0303110002 CPT0303110002.WholeExome.RP-1303.bam 23630053840 BAM aligned CPTAC3 feb43a47-9e63-4fee-97d6-012a7853f0c3 795dc07d5b29864fb6ef31c6a37942ba {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04763.WXS.Tbm.hg38 C3L-04763 AML WXS tumor_bone_marrow CPT0303110002 cc6720e2-8526-42f4-b384-e5e63f62aae5_wxs_gdc_realn.bam 32626803814 BAM harmonized CPTAC3 a341645d-479f-43f0-b895-33ae1051a6fd b76b7069e5cf5def39480a3ad0e2d600 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.MethArray.Green.Tbm C3L-04764 AML Methylation_Array tumor_bone_marrow CPT0260550002 203273630258_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c1b1a611-651b-4fbc-919a-7ac124c9a255 6fe5357de35f785e3c38529209748ad5 {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.MethArray.Red.Tbm C3L-04764 AML Methylation_Array tumor_bone_marrow CPT0260550002 203273630258_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d1a9af49-f7ed-454b-a83c-ea01e1fa589a 47ff0a40db8f2b5140a39158b93d5ac8 {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.miRNA-Seq.S26_L002_R1.Tbm C3L-04764 AML miRNA-Seq tumor_bone_marrow CPT0260570002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGAGC_S26_L002_R1_001.unaln.bam 178127670 BAM S26_L002_R1 unaligned CPTAC3 51dbd00a-d9d5-48c2-a741-1a0a7f463d6a 898801144ba882eff845eac5d58a7d2c {"aliquot_tag": "ALQ_fcbd5243", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.miRNA-Seq.Tbm.hg38 C3L-04764 AML miRNA-Seq tumor_bone_marrow CPT0260570002 3983a953-59bd-4813-9a2c-aa067430def9_mirnaseq_gdc_realn.bam 191415974 BAM harmonized CPTAC3 a18bf2f5-5d19-4b0c-90cf-90a7e53c66a4 dc8236479d12d10691e81a7c912e9be3 {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.RNA-Seq.chimeric.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.chimeric.gdc_realn.bam 38677727 BAM chimeric harmonized CPTAC3 08077f96-7e9a-4fbe-98ce-5cc3e676a600 0f359b392ee3478cb69a8a8aff7c12bd {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.RNA-Seq.genomic.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.genomic.gdc_realn.bam 8906663385 BAM genomic harmonized CPTAC3 0b7b6ba6-cd08-4c35-89d6-4163aa37dc44 3923435fb3fcee45a22694e1be3de0a6 {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.RNA-Seq.S20_L006_R1.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R1_001.fastq.gz 4139086776 FASTQ S20_L006_R1 unaligned CPTAC3 370f0a2e-f908-4c28-9686-1f126fd58771 43a4e8a4a6ed0f1e7b986b434ee915c4 {"aliquot_tag": "ALQ_fcbd5243", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.RNA-Seq.S20_L006_R2.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R2_001.fastq.gz 4823140430 FASTQ S20_L006_R2 unaligned CPTAC3 d253f323-45f9-4ceb-95d3-ac7d264bc1f8 1a88bd75157897cbee19cbbc1d3278ae {"aliquot_tag": "ALQ_fcbd5243", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.RNA-Seq.transcriptome.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.transcriptome.gdc_realn.bam 9981907929 BAM transcriptome harmonized CPTAC3 5a2ab5fb-630d-4876-9433-925d7e1f3308 554d3e667f0fdf4fecd53015d92696fa {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.WGS.Tbm C3L-04764 AML WGS tumor_bone_marrow CPT0260550002 CPT0260550002.WholeGenome.RP-1303.bam 63676234713 BAM aligned CPTAC3 1a4524b1-eba1-4d66-a4b1-aea83eeb6aed f692db7fafc32a518e85ef7642ddf97c {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.WGS.Tbm.hg38 C3L-04764 AML WGS tumor_bone_marrow CPT0260550002 0b9c762a-bb10-4cba-9fb0-d88c404bd01f_wgs_gdc_realn.bam 91925049877 BAM harmonized CPTAC3 410d616d-0780-4fac-9b2e-d3da697f3e9f e0911074e22bdf5fe165b0ccfd7205da {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.WXS.Nbc C3L-04764 AML WXS buccal_normal CPT0260540003 CPT0260540003.WholeExome.RP-1303.bam 26076194544 BAM aligned CPTAC3 d5febe10-212b-44cc-98cd-abbf3be0ecd6 2689fd924e08cc9fc2288211458f12e1 {"aliquot_tag": "ALQ_cc1a1805", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04764.WXS.Nbc.hg38 C3L-04764 AML WXS buccal_normal CPT0260540003 373fe40e-c19b-4f32-8e26-6ad7440cc5bb_wxs_gdc_realn.bam 36843363191 BAM harmonized CPTAC3 76c541bd-e0d0-4820-b4c8-f74fc46dd369 bfa98cb7cef735b1f6d1bcafd394f7ad {"aliquot_tag": "ALQ_cc1a1805", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04764.WXS.Tbm C3L-04764 AML WXS tumor_bone_marrow CPT0260550002 CPT0260550002.WholeExome.RP-1303.bam 23881522848 BAM aligned CPTAC3 283a4db1-e536-448a-87b7-a7f4e6de3c03 6e34b96e226e3f04565af308b6bb770a {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04764.WXS.Tbm.hg38 C3L-04764 AML WXS tumor_bone_marrow CPT0260550002 0b9c762a-bb10-4cba-9fb0-d88c404bd01f_wxs_gdc_realn.bam 33317481378 BAM harmonized CPTAC3 9144f1a0-97cf-41ef-ac03-971f5226082f 96e28972ff2af44063624d6857473cc8 {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.MethArray.Green.Tbm C3L-04766 AML Methylation_Array tumor_bone_marrow CPT0260660002 203561620159_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2a703a04-5296-4a43-8b6d-32c8730e380b 5153fa326fbc8501b9aa519fd8082cf0 {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.MethArray.Red.Tbm C3L-04766 AML Methylation_Array tumor_bone_marrow CPT0260660002 203561620159_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 58c0798e-267f-4323-971d-d945197d5e92 3b89c68ccd010d8643b00e6c8eea78bb {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.miRNA-Seq.S2_L003_R1.Tbm C3L-04766 AML miRNA-Seq tumor_bone_marrow CPT0260670002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGATGT_S2_L003_R1_001.unaln.bam 173028735 BAM S2_L003_R1 unaligned CPTAC3 7dc82f1b-d118-4e31-8dba-38f216c35307 b951847483fee06bf82bf1358080a8f2 {"aliquot_tag": "ALQ_7a2920ed", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.miRNA-Seq.Tbm.hg38 C3L-04766 AML miRNA-Seq tumor_bone_marrow CPT0260670002 a643812b-86a0-4ba9-854f-cbda9e79c95d_mirnaseq_gdc_realn.bam 190923456 BAM harmonized CPTAC3 6ea990cc-4585-4985-9c6e-8b0adcff8ee4 046d93cef9fb8708464438660785839b {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.RNA-Seq.chimeric.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.chimeric.gdc_realn.bam 37089263 BAM chimeric harmonized CPTAC3 b61458c2-0a4a-4fd9-a4a2-927c3da559fd 6d9145819b1789b25b73274fce0edf39 {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.RNA-Seq.genomic.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.genomic.gdc_realn.bam 7948679179 BAM genomic harmonized CPTAC3 fecb3f77-497c-459d-9b8a-080fc358e538 e6186f6528817a4b42aac09fc85dddaa {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.RNA-Seq.S6_L002_R1.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R1_001.fastq.gz 3668817528 FASTQ S6_L002_R1 unaligned CPTAC3 e837050d-a525-4a5e-be38-9adaf277624c 63124561b78e3fd1f25e6af43f599682 {"aliquot_tag": "ALQ_7a2920ed", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.RNA-Seq.S6_L002_R2.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R2_001.fastq.gz 4178937187 FASTQ S6_L002_R2 unaligned CPTAC3 38f58c9e-8d1b-4221-9c7d-80b4c1721651 e0374d2ad7802b79e067feb74da52de2 {"aliquot_tag": "ALQ_7a2920ed", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.RNA-Seq.transcriptome.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.transcriptome.gdc_realn.bam 7239737987 BAM transcriptome harmonized CPTAC3 875847c5-d6af-45f4-8d22-39fce2480e87 0f5435ce0d685e1f5170f723a331967a {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.WGS.Nbc C3L-04766 AML WGS buccal_normal CPT0260650002 CPT0260650002.WholeGenome.RP-1303.bam 67925942595 BAM aligned CPTAC3 b92b8b7a-87f9-4b13-9e55-f97aa43b0a06 a1ffde81c9aac3a09fa07f4757513789 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04766.WGS.Nbc.hg38 C3L-04766 AML WGS buccal_normal CPT0260650002 7522fb52-aa98-4b9c-a501-ead834f04edc_wgs_gdc_realn.bam 104402562872 BAM harmonized CPTAC3 86308fbb-f98a-4d01-92c0-dcc81d98f203 85f57fcc491540de13b149a21e14a5a4 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04766.WGS.Tbm C3L-04766 AML WGS tumor_bone_marrow CPT0260660002 CPT0260660002.WholeGenome.RP-1303.bam 58241138278 BAM aligned CPTAC3 2dbfd9c7-0b99-4709-a901-576b0ee0b46c 4d65cbe5f529a87bc1f4d4f6e026e1ed {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.WGS.Tbm.hg38 C3L-04766 AML WGS tumor_bone_marrow CPT0260660002 a5bb1f68-34a2-4e89-93e2-894767d36772_wgs_gdc_realn.bam 84265014757 BAM harmonized CPTAC3 d2f6501a-b963-45d6-a9a2-671b09642337 f9b944856b661783259cfccf3a3bd59b {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.WXS.Nbc C3L-04766 AML WXS buccal_normal CPT0260650002 CPT0260650002.WholeExome.RP-1303.bam 28034227317 BAM aligned CPTAC3 b8f4dbbf-eea7-4c3a-9416-9ccadb6d3dfd 5c7b35aea83eba9f410315801903a2a1 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04766.WXS.Nbc.hg38 C3L-04766 AML WXS buccal_normal CPT0260650002 7522fb52-aa98-4b9c-a501-ead834f04edc_wxs_gdc_realn.bam 39284780153 BAM harmonized CPTAC3 c126f3de-a3ce-4001-951e-2474f086a1b6 53b504d7511dc934b101e7f2ea70e909 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04766.WXS.Tbm C3L-04766 AML WXS tumor_bone_marrow CPT0260660002 CPT0260660002.WholeExome.RP-1303.bam 23571318929 BAM aligned CPTAC3 b7632efe-0a19-423c-8f59-78cb4d67b671 5ff077ec65064041554f07b21eef8063 {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04766.WXS.Tbm.hg38 C3L-04766 AML WXS tumor_bone_marrow CPT0260660002 a5bb1f68-34a2-4e89-93e2-894767d36772_wxs_gdc_realn.bam 32762262475 BAM harmonized CPTAC3 ac77c05a-238c-4406-bef4-04d31792f409 9c777c09d6c39d8d2465b1e83774a7b7 {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.MethArray.Green.Tbm C3L-04767 AML Methylation_Array tumor_bone_marrow CPT0260760002 203273630048_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 34ab452c-97ec-42e6-b986-e547242f60a9 3700db77dfebde6d5590b354c19d0b04 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.MethArray.Red.Tbm C3L-04767 AML Methylation_Array tumor_bone_marrow CPT0260760002 203273630048_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d3b7f4a2-2cac-4b53-b11c-6f768812287f 7ef690761f2eb2134d1ec25a872f7fbb {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.miRNA-Seq.S3_L003_R1.Tbm C3L-04767 AML miRNA-Seq tumor_bone_marrow CPT0260770002 190508_UNC31-K00269_0215_BH7FYKBBXY_TTAGGC_S3_L003_R1_001.unaln.bam 246884358 BAM S3_L003_R1 unaligned CPTAC3 444c5c4b-7482-409c-92d5-931a4dc5d201 110f214597c6e02267618fd2e56675e4 {"aliquot_tag": "ALQ_b175f348", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.miRNA-Seq.Tbm.hg38 C3L-04767 AML miRNA-Seq tumor_bone_marrow CPT0260770002 ef87942c-3c82-4825-9b65-9da44fba501b_mirnaseq_gdc_realn.bam 282682418 BAM harmonized CPTAC3 0d563733-1785-4f82-b37a-a429a262b212 4a0144f2538ff7edcc7dc07740658c67 {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.RNA-Seq.chimeric.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.chimeric.gdc_realn.bam 42692397 BAM chimeric harmonized CPTAC3 ad17399d-9f9d-475c-b4b4-dd38b2543a50 953fd60e4f2e7a1b695ba3a2d85947f5 {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.RNA-Seq.genomic.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.genomic.gdc_realn.bam 8519618467 BAM genomic harmonized CPTAC3 98857b7e-d2e6-40b0-bb7a-ffc14c58fbea e8dbc9d90350c7eb52133f6f30868eca {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.RNA-Seq.S8_L002_R1.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R1_001.fastq.gz 4188033393 FASTQ S8_L002_R1 unaligned CPTAC3 92bee0be-2e91-47aa-9229-fced2412844b 9053cb50676d32bd29c6dd0448f6e6df {"aliquot_tag": "ALQ_b175f348", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.RNA-Seq.S8_L002_R2.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R2_001.fastq.gz 4694329276 FASTQ S8_L002_R2 unaligned CPTAC3 5016063a-f737-41ec-b266-428eb7eb6c95 efecfed8614eee85e4f033d0e0a67430 {"aliquot_tag": "ALQ_b175f348", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.RNA-Seq.transcriptome.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.transcriptome.gdc_realn.bam 7831070410 BAM transcriptome harmonized CPTAC3 665615ba-246c-428b-a2a1-7ff891a1a4a0 eb1065d6e09fbfa4e7ac425f2b10ffc9 {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.WGS.Tbm C3L-04767 AML WGS tumor_bone_marrow CPT0260760002 CPT0260760002.WholeGenome.RP-1303.bam 61097518367 BAM aligned CPTAC3 6fd28ed6-a485-4b64-8ecb-2ae3b08a3c1e 19e493006a5dcc2826c1d7cdfff98718 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.WGS.Tbm.hg38 C3L-04767 AML WGS tumor_bone_marrow CPT0260760002 0eb42c6e-f668-482b-8dc5-8390fd97a45f_wgs_gdc_realn.bam 90069015958 BAM harmonized CPTAC3 b8e7bafc-db87-4aef-a154-d5a065dcc994 32c49540a7ba8ca4f62114fba4e428b6 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.WXS.Nbc C3L-04767 AML WXS buccal_normal CPT0260750003 CPT0260750003.WholeExome.RP-1303.bam 18042532462 BAM aligned CPTAC3 db49fd10-7092-4a5d-896f-e4504d263fa8 fd70b9a5e6521b71702bcb955eaca89c {"aliquot_tag": "ALQ_bcb290be", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04767.WXS.Nbc.hg38 C3L-04767 AML WXS buccal_normal CPT0260750003 04e7fee7-5f04-403f-b49a-64706b326083_wxs_gdc_realn.bam 24768827151 BAM harmonized CPTAC3 2380ca7e-3224-488c-b0e0-baebea395923 93a52dfaa5811d146f2e34632b7e62cf {"aliquot_tag": "ALQ_bcb290be", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04767.WXS.Tbm C3L-04767 AML WXS tumor_bone_marrow CPT0260760002 CPT0260760002.WholeExome.RP-1303.bam 21127839469 BAM aligned CPTAC3 400eb839-d22f-4150-adeb-95753cf78830 b89fa2e2b46f3a994ad02b7632d59030 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04767.WXS.Tbm.hg38 C3L-04767 AML WXS tumor_bone_marrow CPT0260760002 0eb42c6e-f668-482b-8dc5-8390fd97a45f_wxs_gdc_realn.bam 28599266617 BAM harmonized CPTAC3 a24305f0-d979-4cf3-ba16-3c31dd7a20fc ec86ec5ee4f0b76846b01797f88147e8 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-04786.MethArray.Green.A C3L-04786 LSCC Methylation_Array tissue_normal CPT0279230006 204372030014_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 942d123b-72e8-43ae-b974-adcb7fe94c42 3267519953cc142dc044047c3d091b64 {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.MethArray.Green.T C3L-04786 LSCC Methylation_Array tumor CPT0279210009 204372030074_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4201410a-7f39-413e-8ccb-089b7ac0f759 0e0dd2af5aec652189d05e8048f605fb {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor"} -C3L-04786.MethArray.Red.A C3L-04786 LSCC Methylation_Array tissue_normal CPT0279230006 204372030014_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 07ec162d-221e-4002-b74a-0d3956e486f6 1fbd4ac949492b9d63d3fdec39abef6a {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.MethArray.Red.T C3L-04786 LSCC Methylation_Array tumor CPT0279210009 204372030074_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 aca1eced-0072-402b-8cc4-1cf1f2ff0c07 9a87924c2f55808e768f83fe27eeec8d {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor"} -C3L-04786.miRNA-Seq.A.hg38 C3L-04786 LSCC miRNA-Seq tissue_normal CPT0279230009 82151494-6c74-4cf5-a5a4-e3f63aa26ade_mirnaseq_gdc_realn.bam 239860815 BAM harmonized CPTAC3 14f752b3-6fed-4a9a-bf31-17c1db27b946 306d95260198555c91946a8cd86bfb04 {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.miRNA-Seq.S5_L006_R1.T C3L-04786 LSCC miRNA-Seq tumor CPT0279210006 200224_UNC31-K00269_0267_AHC722BBXY_ACAGTG_S5_L006_R1_001.unaln.bam 220604822 BAM S5_L006_R1 unaligned CPTAC3 4ffb68ad-9423-4c16-bba5-57835f450f4c 606cd844ddbdb598eeb1279313f14c9f {"aliquot_tag": "ALQ_30a7160f", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04786.miRNA-Seq.S8_L005_R1.A C3L-04786 LSCC miRNA-Seq tissue_normal CPT0279230009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCGTCC_S8_L005_R1_001.unaln.bam 218944913 BAM S8_L005_R1 unaligned CPTAC3 d98ab33c-9ebe-439e-8917-3c24be963558 2a3eb449ad0dd7f1003033516ef06c4d {"aliquot_tag": "ALQ_dad858fe", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.miRNA-Seq.T.hg38 C3L-04786 LSCC miRNA-Seq tumor CPT0279210006 4dd0d1b1-8b7d-4fc2-babd-f0f5bef45acb_mirnaseq_gdc_realn.bam 239848891 BAM harmonized CPTAC3 11669fc5-9f8b-4509-968a-91499610e459 91369f0d04b12db11c1c4e839d0b5ba2 {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor"} -C3L-04786.RNA-Seq.chimeric.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.chimeric.gdc_realn.bam 31515844 BAM chimeric harmonized CPTAC3 fe5e41e5-fb3d-482f-96a7-9f82c5778972 7b97bf184d0aaa999554d8b4456c6b9e {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.RNA-Seq.chimeric.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.chimeric.gdc_realn.bam 36523483 BAM chimeric harmonized CPTAC3 1c3cc54d-2a09-4bfe-999f-a64ef3b589c9 0facda299ebe975076c4a6be79b857d8 {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor"} -C3L-04786.RNA-Seq.genomic.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.genomic.gdc_realn.bam 8507591196 BAM genomic harmonized CPTAC3 9fd4aa01-0131-4446-9f5c-6b7abd4f4425 51d6e0795c1019e7ffb9671fbecd7014 {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.RNA-Seq.genomic.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.genomic.gdc_realn.bam 7078896591 BAM genomic harmonized CPTAC3 b9738a00-d11a-4548-93a0-1d28aa877edb c47480aae0b2576b137a3fa57a1603ae {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor"} -C3L-04786.RNA-Seq.S16_L008_R1.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R1_001.fastq.gz 4036325353 FASTQ S16_L008_R1 unaligned CPTAC3 cfc89afe-5f55-471c-8103-5252a5b696d1 0b6075d2b94704c081d6ea364a287895 {"aliquot_tag": "ALQ_dad858fe", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.RNA-Seq.S16_L008_R2.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R2_001.fastq.gz 4641465944 FASTQ S16_L008_R2 unaligned CPTAC3 a0b1ffc3-b500-4406-878d-aed70e0fe282 59c79332917d3eff2985aa0b2ef2a25c {"aliquot_tag": "ALQ_dad858fe", "sample": "S16", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.RNA-Seq.S21_L006_R1.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R1_001.fastq.gz 3479865010 FASTQ S21_L006_R1 unaligned CPTAC3 9ade8c4c-e0cb-4b9d-94e3-9221a03c8db9 6a3d6460676e09a8104454cd9707c1d2 {"aliquot_tag": "ALQ_30a7160f", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04786.RNA-Seq.S21_L006_R2.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R2_001.fastq.gz 3690346414 FASTQ S21_L006_R2 unaligned CPTAC3 c35d2ca2-c670-4e53-abbc-ac7af4607258 9bc3f15b4d6d7d5ee85f575b4027fbac {"aliquot_tag": "ALQ_30a7160f", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04786.RNA-Seq.transcriptome.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.transcriptome.gdc_realn.bam 10703361921 BAM transcriptome harmonized CPTAC3 93afec32-a1a7-4691-9c16-1b3078a975b7 6412b25533b73a224f3e30586aee1fa9 {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.RNA-Seq.transcriptome.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.transcriptome.gdc_realn.bam 9528929454 BAM transcriptome harmonized CPTAC3 eaaa2a9d-7aba-4e0c-8056-be39813f0610 193a2955b18694a267cd2d5c2be9377c {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor"} -C3L-04786.WGS.N C3L-04786 LSCC WGS blood_normal CPT0279350002 CPT0279350002.WholeGenome.RP-2158.bam 23865826101 BAM aligned CPTAC3 54e4018b-b8d0-4519-ae9c-1939ee18b691 2dc447415a286c4645efac6de490013d {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal"} -C3L-04786.WGS.N.hg38 C3L-04786 LSCC WGS blood_normal CPT0279350002 d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wgs_gdc_realn.bam 68224029568 BAM harmonized CPTAC3 75496f29-8401-4131-b320-d16cced4737b 4dd71dcf688e4d95cf1900152c54c063 {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal"} -C3L-04786.WGS.T C3L-04786 LSCC WGS tumor CPT0279210009 CPT0279210009.WholeGenome.RP-2158.bam 25897885118 BAM aligned CPTAC3 060f78df-6fe1-4633-89a2-4a97d53c48c1 2d19430da77d229a99dfcea81babd553 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor"} -C3L-04786.WGS.T.hg38 C3L-04786 LSCC WGS tumor CPT0279210009 3feebd7d-0450-44eb-9c19-f112017bcf12_wgs_gdc_realn.bam 77604190824 BAM harmonized CPTAC3 6c11187b-9320-49ed-838d-692f239d9451 4e32f0d821faa7526e0389b63b42a777 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor"} -C3L-04786.WXS.A C3L-04786 LSCC WXS tissue_normal CPT0279230006 CPT0279230006.WholeExome.RP-1303.bam 28397456283 BAM aligned CPTAC3 2dbe4211-9f6e-45ec-9e29-089e98f6d627 a1dbf07ed018eaac782742edddbd2598 {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.WXS.A.hg38 C3L-04786 LSCC WXS tissue_normal CPT0279230006 5ec5adef-48bb-45e4-9a94-58ac5594c47f_wxs_gdc_realn.bam 38660851671 BAM harmonized CPTAC3 94f5f1e8-b338-4b3a-b2f3-dca99f15c105 9c96cd4cec8dd11268b45e46ea19e97a {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04786.WXS.N C3L-04786 LSCC WXS blood_normal CPT0279350002 CPT0279350002.WholeExome.RP-1303.bam 22100950025 BAM aligned CPTAC3 ea4f14d6-73e9-4f16-816e-787f9b50ee09 3ade6b6ce3b6a6c3d64c853fb5c8ce6a {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal"} -C3L-04786.WXS.N.hg38 C3L-04786 LSCC WXS blood_normal CPT0279350002 d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wxs_gdc_realn.bam 29932093972 BAM harmonized CPTAC3 487e9694-73fd-4a5f-ab4d-1d2171cd4757 d35f7ee4ceffe6b031125c217a97efe9 {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal"} -C3L-04786.WXS.T C3L-04786 LSCC WXS tumor CPT0279210009 CPT0279210009.WholeExome.RP-1303.bam 19018558188 BAM aligned CPTAC3 0bcc5c8f-1ac0-498c-af74-487a33625516 b3d82b85f96f75bfd4ab5daf730c4c69 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor"} -C3L-04786.WXS.T.hg38 C3L-04786 LSCC WXS tumor CPT0279210009 3feebd7d-0450-44eb-9c19-f112017bcf12_wxs_gdc_realn.bam 26094775383 BAM harmonized CPTAC3 15f12617-0664-4865-884b-d0b00331f2a2 a4cb29558e161746cfc47358c0fc7e98 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor"} -C3L-04791.MethArray.Green.T C3L-04791 HNSCC Methylation_Array tumor CPT0250310006 203271740101_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 9ae6de86-f22b-4b83-af92-fd0ee8b91caf 911410b087e9f2847a9773869b61d22b {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor"} -C3L-04791.MethArray.Red.T C3L-04791 HNSCC Methylation_Array tumor CPT0250310006 203271740101_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 f1b5d905-8020-415b-aa6f-3641a035ad6b 2f2e7d205b28d45616259d958daa0d10 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor"} -C3L-04791.miRNA-Seq.A.hg38 C3L-04791 HNSCC miRNA-Seq tissue_normal CPT0250330006 b4f3e67a-2b62-4bc7-a7f8-57572bba55c0_mirnaseq_gdc_realn.bam 417687994 BAM harmonized CPTAC3 6e9679ef-40ae-4b96-935e-a619dc91fb90 19f01ec5c69916cd0cadd0560349d488 {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04791.miRNA-Seq.S39_L006_R1.A C3L-04791 HNSCC miRNA-Seq tissue_normal CPT0250330006 190228_UNC32-K00270_0151_AHYLY3BBXX_CTATAC_S39_L006_R1_001.unaln.bam 372285136 BAM S39_L006_R1 unaligned CPTAC3 017346a9-e434-4781-89a3-72b6616185c3 03da83e66945c6a202fabe6345fe2ea6 {"aliquot_tag": "ALQ_5686d464", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04791.miRNA-Seq.S42_L004_R1.T C3L-04791 HNSCC miRNA-Seq tumor CPT0250310009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L004_R1_001.unaln.bam 278783160 BAM S42_L004_R1 unaligned CPTAC3 35dccd7b-dde0-4317-b180-8ac30802dad0 b5d02a50aae2e0298556bdd86c68ead3 {"aliquot_tag": "ALQ_bcf99a95", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04791.miRNA-Seq.T.hg38 C3L-04791 HNSCC miRNA-Seq tumor CPT0250310009 a883bc4b-c020-4c94-bf7f-f640939085a4_mirnaseq_gdc_realn.bam 306761871 BAM harmonized CPTAC3 1e4db173-b057-4cbb-a21d-24682ebdb7db 91ff8ceb02a9ebd63b3434abc72ac97d {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor"} -C3L-04791.RNA-Seq.chimeric.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.chimeric.gdc_realn.bam 39842054 BAM chimeric harmonized CPTAC3 800f0174-e135-4c49-bdd5-48b255a01dfb 218d8019388997d7d297ae440b33d398 {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04791.RNA-Seq.chimeric.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.chimeric.gdc_realn.bam 195418726 BAM chimeric harmonized CPTAC3 f9eee9b6-d894-4257-8991-8396ecde39c0 33941d702074658248fc8c4509afe815 {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor"} -C3L-04791.RNA-Seq.genomic.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.genomic.gdc_realn.bam 8358159392 BAM genomic harmonized CPTAC3 75ed03b5-4581-43c7-8cc2-2f4fe0a271de 123bf58eb8dede12fec895a42d5f4279 {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04791.RNA-Seq.genomic.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.genomic.gdc_realn.bam 9595231656 BAM genomic harmonized CPTAC3 0eb49899-8a58-4759-bf6f-28b07713e73f 71db24180f5be0862a89d04443b6efb7 {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor"} -C3L-04791.RNA-Seq.S13_L004_R1.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R1_001.fastq.gz 4028945926 FASTQ S13_L004_R1 unaligned CPTAC3 d5cca660-598a-4728-a855-243157a6bb55 ebda52e4d4f5fb48ef8de5a1950ffde5 {"aliquot_tag": "ALQ_5686d464", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04791.RNA-Seq.S13_L004_R2.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R2_001.fastq.gz 4617091802 FASTQ S13_L004_R2 unaligned CPTAC3 4c220caa-87b7-4a9e-9250-50b6fd084faa 532bc9e8bc4743c7482d0e3237d1a607 {"aliquot_tag": "ALQ_5686d464", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04791.RNA-Seq.S4_L001_R1.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4530786617 FASTQ S4_L001_R1 unaligned CPTAC3 d2458585-b886-4b09-86a0-a0f29977f3af 15ed01f463784652648e5c2b609f1360 {"aliquot_tag": "ALQ_bcf99a95", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04791.RNA-Seq.S4_L001_R2.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4655993230 FASTQ S4_L001_R2 unaligned CPTAC3 7c1c0732-04b1-46b5-9b86-f1eda6ccc0b3 40bd800121cc61b86905d5c5c486484c {"aliquot_tag": "ALQ_bcf99a95", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04791.RNA-Seq.transcriptome.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.transcriptome.gdc_realn.bam 10787494196 BAM transcriptome harmonized CPTAC3 2b92ed18-5cdd-47a4-8e80-74e8adc58176 137460d419d134e7529c374adf6263ab {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04791.RNA-Seq.transcriptome.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.transcriptome.gdc_realn.bam 11336484739 BAM transcriptome harmonized CPTAC3 ae49c9eb-fa1a-4fa0-ae28-d4e607898bcb 140fed6e6812cb6db2a70db3ea52f1ce {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor"} -C3L-04791.WGS.N C3L-04791 HNSCC WGS blood_normal CPT0250450002 CPT0250450002.WholeGenome.RP-1303.bam 78530104123 BAM aligned CPTAC3 103fed94-250f-4832-a9e0-647398187bd1 0a7d7ed2e26b6d2a9611a3b5f0ba474b {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04791.WGS.N.hg38 C3L-04791 HNSCC WGS blood_normal CPT0250450002 a86d49fd-960f-4d9b-8a34-b865c7c18601_wgs_gdc_realn.bam 114891968351 BAM harmonized CPTAC3 ef0d81fb-876a-49d7-b376-c9c4a9f74120 27dcb9a58a5b18f95d16d8984ab728f0 {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04791.WGS.T C3L-04791 HNSCC WGS tumor CPT0250310006 CPT0250310006.WholeGenome.RP-1303.bam 70790331425 BAM aligned CPTAC3 89e0b7fe-cb0d-44d7-bcf8-0c54b02d8738 8e959be9df3b861263139d455e602b85 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor"} -C3L-04791.WGS.T.hg38 C3L-04791 HNSCC WGS tumor CPT0250310006 11ba5a36-4f9f-4190-b5d3-0fce329153e2_wgs_gdc_realn.bam 105285574802 BAM harmonized CPTAC3 2f722cdb-c26e-49f6-81ff-354a229f13b4 45e86e891d201a55474cd22bf04176a7 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor"} -C3L-04791.WXS.N C3L-04791 HNSCC WXS blood_normal CPT0250450002 CPT0250450002.WholeExome.RP-1303.bam 22277337885 BAM aligned CPTAC3 284a6d96-cb2f-46cd-a140-7027a076c55c ed1e1a28b42bf718211d50fe32e84154 {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04791.WXS.N.hg38 C3L-04791 HNSCC WXS blood_normal CPT0250450002 a86d49fd-960f-4d9b-8a34-b865c7c18601_wxs_gdc_realn.bam 30859792880 BAM harmonized CPTAC3 b9bd40ed-4000-4486-9101-a8c417b881eb 52cbbad21cfc6286cd76bf08be33861a {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04791.WXS.T C3L-04791 HNSCC WXS tumor CPT0250310006 CPT0250310006.WholeExome.RP-1303.bam 20910524021 BAM aligned CPTAC3 517d8510-ad8f-4cbd-80f2-f454ddb9ccf8 18982a967ad73d32149d17c70dc0fc57 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor"} -C3L-04791.WXS.T.hg38 C3L-04791 HNSCC WXS tumor CPT0250310006 11ba5a36-4f9f-4190-b5d3-0fce329153e2_wxs_gdc_realn.bam 29861325855 BAM harmonized CPTAC3 0bfcfa27-88b4-495c-9035-ad1a74135e1d 5b1d92060e521c09ba8a499815485e95 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor"} -C3L-04792.MethArray.Green.A C3L-04792 LSCC Methylation_Array tissue_normal CPT0297670006 204372030072_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 db97db87-a423-418d-8411-a4cb23bbc5fa 8572e22f78b913ae11547057d6c3fe83 {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.MethArray.Green.T C3L-04792 LSCC Methylation_Array tumor CPT0297650006 204372030071_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 846d7672-3a67-4054-8967-80debe588582 22e6922af305c2e745f9f00f96098fbf {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor"} -C3L-04792.MethArray.Red.A C3L-04792 LSCC Methylation_Array tissue_normal CPT0297670006 204372030072_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 c04eddb8-fc10-496e-936c-59059d64a669 f76cb61dd5023f6208bfb829e35958f7 {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.MethArray.Red.T C3L-04792 LSCC Methylation_Array tumor CPT0297650006 204372030071_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 5c20cb62-ca4f-4e38-9095-8a8d8fc213d4 a985594101db5cb7d00ef92dad0803df {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor"} -C3L-04792.miRNA-Seq.A.hg38 C3L-04792 LSCC miRNA-Seq tissue_normal CPT0297670009 330774a2-ceef-4359-ab92-a28c80cbb747_mirnaseq_gdc_realn.bam 209889955 BAM harmonized CPTAC3 05c3435c-9a98-4bf8-bcd3-9c0ddbad9202 4ec9a9f4721d08792f76b08a0446b824 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.miRNA-Seq.S21_L005_R1.A C3L-04792 LSCC miRNA-Seq tissue_normal CPT0297670009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTTTCG_S21_L005_R1_001.unaln.bam 191736809 BAM S21_L005_R1 unaligned CPTAC3 23e0d790-2403-481e-8b94-d6ce0bc0b5eb f8fdbc4df055f656793f09365c2ba525 {"aliquot_tag": "ALQ_f17cd547", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.miRNA-Seq.S47_L007_R1.T C3L-04792 LSCC miRNA-Seq tumor CPT0297650009 200224_UNC31-K00269_0267_AHC722BBXY_TCGAAG_S47_L007_R1_001.unaln.bam 213001197 BAM S47_L007_R1 unaligned CPTAC3 c0b9bd53-207c-4bda-a6cf-4eb9be9a5884 1c2750c9c1d026ced71e21d7ecd2cb9a {"aliquot_tag": "ALQ_8bbc8627", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04792.miRNA-Seq.T.hg38 C3L-04792 LSCC miRNA-Seq tumor CPT0297650009 0dc29a88-6a9d-4b0e-b7b4-1c97fefeb75e_mirnaseq_gdc_realn.bam 238310191 BAM harmonized CPTAC3 0a9ab958-458c-457b-8a24-ca733ea48d56 cdcf52efdb8b19294891773dc07ee25b {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor"} -C3L-04792.RNA-Seq.chimeric.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.chimeric.gdc_realn.bam 26904747 BAM chimeric harmonized CPTAC3 0f2be7ae-0994-4b8f-a69d-724aec6b137c ff07f8832f49640cbe81439337791e61 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.RNA-Seq.chimeric.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.chimeric.gdc_realn.bam 37316326 BAM chimeric harmonized CPTAC3 85e44a96-2fc8-4c87-9eee-72b322b2e693 c4f2cdbd0556d291b4d51f4aa2668fa8 {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor"} -C3L-04792.RNA-Seq.genomic.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.genomic.gdc_realn.bam 8446510475 BAM genomic harmonized CPTAC3 53091512-3f72-4c26-83b2-084181ecce3c a584e2e97d27e1cddb08fa4384758de7 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.RNA-Seq.genomic.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.genomic.gdc_realn.bam 8787844267 BAM genomic harmonized CPTAC3 300df8fb-83e0-4c57-be28-4834051e626f 25a451bddea0a14bf718ececd2b057e0 {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor"} -C3L-04792.RNA-Seq.S15_L004_R1.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R1_001.fastq.gz 4296198891 FASTQ S15_L004_R1 unaligned CPTAC3 1234511d-d6ff-4799-93cb-ee93a0424bf6 1b30c01af76db7d23ae09ea13bc49b2f {"aliquot_tag": "ALQ_8bbc8627", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04792.RNA-Seq.S15_L004_R2.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R2_001.fastq.gz 4594352733 FASTQ S15_L004_R2 unaligned CPTAC3 d542e6b6-4511-4dcf-a6c2-33b1adab5f18 212b751a4d0f7104737710dc151a7099 {"aliquot_tag": "ALQ_8bbc8627", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04792.RNA-Seq.S8_L002_R1.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R1_001.fastq.gz 3853211006 FASTQ S8_L002_R1 unaligned CPTAC3 2998a5d3-97aa-432a-9be0-36e6b7a46c38 32b1d56e26606a1a4a6f454222d0ac44 {"aliquot_tag": "ALQ_f17cd547", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.RNA-Seq.S8_L002_R2.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R2_001.fastq.gz 4587257386 FASTQ S8_L002_R2 unaligned CPTAC3 52ab69d3-4ae5-4074-866c-cef78151abaf 08f7a1182c30478d2a2d1e5023d5b228 {"aliquot_tag": "ALQ_f17cd547", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.RNA-Seq.transcriptome.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.transcriptome.gdc_realn.bam 10964426969 BAM transcriptome harmonized CPTAC3 c8f66e8a-0b94-4bc0-9cb1-5de2461b4179 018375ee35e0fa9dd2ef692211c63581 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.RNA-Seq.transcriptome.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.transcriptome.gdc_realn.bam 12396611725 BAM transcriptome harmonized CPTAC3 7577014f-67ba-49be-945c-e05b0e95e1e0 e79517b9f36ed08a2dca01e4c8951976 {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor"} -C3L-04792.WGS.N C3L-04792 LSCC WGS blood_normal CPT0297780002 CPT0297780002.WholeGenome.RP-2158.bam 25245438802 BAM aligned CPTAC3 2826d306-3653-4d2f-80e3-3544fd6f8fb0 06204361571e2f0495dde1605a1c2ec1 {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04792.WGS.N.hg38 C3L-04792 LSCC WGS blood_normal CPT0297780002 d58e9015-53d6-4a74-b3dc-55c27acd8016_wgs_gdc_realn.bam 73153320417 BAM harmonized CPTAC3 2e6c3df5-9ace-47df-ad27-5c5c1ccf902c 7a774c32cd5676792798ae2fb614c84f {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04792.WGS.T C3L-04792 LSCC WGS tumor CPT0297650006 CPT0297650006.WholeGenome.RP-2158.bam 27485373003 BAM aligned CPTAC3 ed9627aa-97e9-4b49-850a-100f7a771bc8 0b295e25a1012e97f32876d9e154e452 {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor"} -C3L-04792.WGS.T.hg38 C3L-04792 LSCC WGS tumor CPT0297650006 d283d472-cff8-47b2-835d-2888bf62bb3c_wgs_gdc_realn.bam 80550743528 BAM harmonized CPTAC3 e4ba2471-cdc0-4ac0-ad6c-d63174dfa996 4cc5a89932886503174c3aa1a2d9b634 {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor"} -C3L-04792.WXS.A C3L-04792 LSCC WXS tissue_normal CPT0297670006 CPT0297670006.WholeExome.RP-1303.bam 25422919637 BAM aligned CPTAC3 d822892f-0577-4c64-aaf1-07ead8360961 04e338ddd301709e8bd2bd4db30875ef {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.WXS.A.hg38 C3L-04792 LSCC WXS tissue_normal CPT0297670006 f48ae438-bf64-4d54-beff-bf931145dae5_wxs_gdc_realn.bam 35573024080 BAM harmonized CPTAC3 f9cc7d7a-eab2-4254-974d-6abdab299b8f 6581d665328ac079b51e1c679c4522c0 {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04792.WXS.N C3L-04792 LSCC WXS blood_normal CPT0297780002 CPT0297780002.WholeExome.RP-1303.bam 28125500809 BAM aligned CPTAC3 c9515713-ecf2-4947-9b46-41360ca878b8 a0d0cf3e38aaa439b44ea3cc8d397a4c {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04792.WXS.N.hg38 C3L-04792 LSCC WXS blood_normal CPT0297780002 d58e9015-53d6-4a74-b3dc-55c27acd8016_wxs_gdc_realn.bam 38050293278 BAM harmonized CPTAC3 32bcb2fe-f0b7-4347-9d61-d007a3612005 dec8c48d563a05ca5baa9c7314f5a2fd {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal"} -C3L-04792.WXS.T C3L-04792 LSCC WXS tumor CPT0297650006 CPT0297650006.WholeExome.RP-1303.bam 26505754048 BAM aligned CPTAC3 64477b16-df7a-4c73-8782-3510ec7b2afd 71be52ab371efc2dda8ac619efbe4c66 {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor"} -C3L-04792.WXS.T.hg38 C3L-04792 LSCC WXS tumor CPT0297650006 d283d472-cff8-47b2-835d-2888bf62bb3c_wxs_gdc_realn.bam 36638269036 BAM harmonized CPTAC3 d2f325d0-bdd6-4030-a786-4fe0452985d4 17173a546a9d5cfd64372764e4f1714c {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor"} -C3L-04795.MethArray.Green.T C3L-04795 GBM Methylation_Array tumor CPT0257640006 204930630113_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 7a53724a-dac0-47ef-97ce-55cf3d2d94f6 e5736d0698892926599687fe1355fb20 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor"} -C3L-04795.MethArray.Red.T C3L-04795 GBM Methylation_Array tumor CPT0257640006 204930630113_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 2fe76084-e231-40b3-b882-13ccc5fd05ec 5960a7afdd81148e4e29fd1aa8ac6120 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor"} -C3L-04795.miRNA-Seq.S1_L001_R1.T C3L-04795 GBM miRNA-Seq tumor CPT0257640009 200403_UNC31-K00269_0274_AHCF7GBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 298863378 BAM S1_L001_R1 unaligned CPTAC3 64cf5a0d-50c0-49b4-8ff4-a220d43ad1b2 1a4f200a83c0082d1053f6bb314dbbd7 {"aliquot_tag": "ALQ_e173bad8", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04795.miRNA-Seq.T.hg38 C3L-04795 GBM miRNA-Seq tumor CPT0257640009 f44042cb-e293-4f34-884d-4ed796d4d746_mirnaseq_gdc_realn.bam 335243543 BAM harmonized CPTAC3 38edfdd0-d6e2-4227-9e62-42dd598e4e88 c5f46d7c55f022e6817e2f27082cdbc0 {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor"} -C3L-04795.RNA-Seq.chimeric.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.chimeric.gdc_realn.bam 33272009 BAM chimeric harmonized CPTAC3 1e711ed8-072d-42df-9b4b-351bcf23bd9b 21bc6799cbdffda23200e9a3ff8ae32b {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor"} -C3L-04795.RNA-Seq.genomic.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.genomic.gdc_realn.bam 7771192212 BAM genomic harmonized CPTAC3 92aca12b-142c-4893-9f79-7fff37b19f76 2d289e63aabdb46c901d63d9f26c6657 {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor"} -C3L-04795.RNA-Seq.S17_L005_R1.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 3633010663 FASTQ S17_L005_R1 unaligned CPTAC3 0ff10436-30c0-4571-a5f1-db72929506b8 688c644298eb23aa2d7c31f5bb943c2e {"aliquot_tag": "ALQ_e173bad8", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04795.RNA-Seq.S17_L005_R2.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ S17_L005_R2 unaligned CPTAC3 d3c4c707-2ecb-44db-9c2b-04a6f624d67f f560ddfe6756b0bb5baf8ac6ebc3a8c1 {"aliquot_tag": "ALQ_e173bad8", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04795.RNA-Seq.transcriptome.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.transcriptome.gdc_realn.bam 8723813806 BAM transcriptome harmonized CPTAC3 97f66948-9536-49ef-8e9a-73a42c83c704 487f27da039f8976dcd0d9214df6e443 {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor"} -C3L-04795.WGS.N C3L-04795 GBM WGS blood_normal CPT0257730002 CPT0257730002.WholeGenome.RP-2158.bam 21078681011 BAM aligned CPTAC3 d5594591-b0be-46d5-a50b-687a1116392c 995ab0767e58ee7fe1efedad6e9d3530 {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal"} -C3L-04795.WGS.N.hg38 C3L-04795 GBM WGS blood_normal CPT0257730002 66331f85-ba28-4eb8-9df1-60a3cd38d91a_wgs_gdc_realn.bam 59840869093 BAM harmonized CPTAC3 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 3bcb06c175b4d94e65cc21b849bcda1c {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal"} -C3L-04795.WGS.T C3L-04795 GBM WGS tumor CPT0257640006 CPT0257640006.WholeGenome.RP-2158.bam 29876299653 BAM aligned CPTAC3 a47b409b-7dcf-4b2a-b0b0-d101f0883464 3f5e62ccaa486489891ddae53f0bb3e6 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor"} -C3L-04795.WGS.T.hg38 C3L-04795 GBM WGS tumor CPT0257640006 376e0e57-4948-421b-a670-e310f4072910_wgs_gdc_realn.bam 88596718616 BAM harmonized CPTAC3 10d0d280-5380-4979-84b9-54470cf8aae8 cc656015ce0b9c9670cc4a69a4a5c834 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor"} -C3L-04795.WXS.N C3L-04795 GBM WXS blood_normal CPT0257730002 CPT0257730002.WholeExome.RP-1303.bam 28990985033 BAM aligned CPTAC3 26d444b9-7835-4344-9f0c-2ad18b4c93e1 6cc6a42a07ff29b5a93c444f39489a01 {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal"} -C3L-04795.WXS.N.hg38 C3L-04795 GBM WXS blood_normal CPT0257730002 66331f85-ba28-4eb8-9df1-60a3cd38d91a_wxs_gdc_realn.bam 39013789635 BAM harmonized CPTAC3 bba78a37-3fd2-4f10-bd89-b298362fed0e cb987b2510d4ecd2ede9cfb489ee54a4 {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal"} -C3L-04795.WXS.T C3L-04795 GBM WXS tumor CPT0257640006 CPT0257640006.WholeExome.RP-1303.bam 22044187706 BAM aligned CPTAC3 1b0cbbdb-5519-478f-8a0d-0ae8ed08c3d2 2a15cfe91c9120ba7e86e137d67f1763 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor"} -C3L-04795.WXS.T.hg38 C3L-04795 GBM WXS tumor CPT0257640006 376e0e57-4948-421b-a670-e310f4072910_wxs_gdc_realn.bam 30536537645 BAM harmonized CPTAC3 281e34f3-b97d-4b82-93a2-12421209116a b8ec118f53ce0c105d909ddc0d83024a {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor"} -C3L-04804.MethArray.Green.A C3L-04804 LSCC Methylation_Array tissue_normal CPT0271710009 204372030127_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2b9765b2-5c7f-4926-a80a-54bc5a8d1361 46870db7120c75ab194b79d04f735f63 {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.MethArray.Green.T C3L-04804 LSCC Methylation_Array tumor CPT0271660006 204367490057_R03C01_Grn.idat 13677905 IDAT Green NA CPTAC3 b863f361-1276-405a-a3a9-20cb4d67c752 70aaaaff776b9508bb386b5ea0d6dc5c {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor"} -C3L-04804.MethArray.Red.A C3L-04804 LSCC Methylation_Array tissue_normal CPT0271710009 204372030127_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 163fa391-0bc9-4497-9387-66ba09a75a8d b89d93f099954e60268c4060f64705e1 {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.MethArray.Red.T C3L-04804 LSCC Methylation_Array tumor CPT0271660006 204367490057_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 0d454711-f07b-4877-89d3-0c285bf2803e 2cb6d091c9be8d4cd89e6b56383c88c8 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor"} -C3L-04804.miRNA-Seq.A.hg38 C3L-04804 LSCC miRNA-Seq tissue_normal CPT0271710006 ae14e750-f719-4d94-a2da-27865eb14020_mirnaseq_gdc_realn.bam 321477449 BAM harmonized CPTAC3 2b1791cd-4163-454a-ae39-ee14a93dbaa6 cacf8433520e8393eec860beb4044b07 {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.miRNA-Seq.S32_L008_R1.T C3L-04804 LSCC miRNA-Seq tumor CPT0271660009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACTCA_S32_L008_R1_001.unaln.bam 178949664 BAM S32_L008_R1 unaligned CPTAC3 d16746d6-b11f-4b67-ad79-7504dc4a04a8 265a47252633253bb0afb52def96fac7 {"aliquot_tag": "ALQ_ba46dbff", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04804.miRNA-Seq.S44_L006_R1.A C3L-04804 LSCC miRNA-Seq tissue_normal CPT0271710006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TATAAT_S44_L006_R1_001.unaln.bam 288986942 BAM S44_L006_R1 unaligned CPTAC3 8a4b284e-c084-4a7e-9def-3dade40feeaa f60bcb0148ec7d50f9d99fc9907ca0aa {"aliquot_tag": "ALQ_5385c9db", "sample": "S44", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.miRNA-Seq.T.hg38 C3L-04804 LSCC miRNA-Seq tumor CPT0271660009 ebe8d36a-a587-4369-96bc-ef167787b04e_mirnaseq_gdc_realn.bam 202434701 BAM harmonized CPTAC3 e58d4af7-5a58-45f3-8745-145db6fa4e79 b49d31bdf2a248f1b7de733640e5cc85 {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor"} -C3L-04804.RNA-Seq.chimeric.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.chimeric.gdc_realn.bam 29481489 BAM chimeric harmonized CPTAC3 344e3285-ab3f-4783-a248-f2af53e0b168 eaa1df7a2d41905f4486d2e085b73565 {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.RNA-Seq.chimeric.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.chimeric.gdc_realn.bam 120967413 BAM chimeric harmonized CPTAC3 1c9e1399-a0f7-40a6-907f-a43a54534425 53bedfce20576dbcc83710ef775bd08d {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor"} -C3L-04804.RNA-Seq.genomic.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.genomic.gdc_realn.bam 8822852167 BAM genomic harmonized CPTAC3 7f5d7002-9a2a-4a4f-a484-9d0bcd0051dd 13a2612fc2b915a88224cabfbfaed97b {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.RNA-Seq.genomic.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.genomic.gdc_realn.bam 7410818684 BAM genomic harmonized CPTAC3 85d27037-af2d-4daf-b95e-b4cbb9ff1b0a 1333ec817b801ddf8421d69af3355ad4 {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor"} -C3L-04804.RNA-Seq.S28_L007_R1.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R1_001.fastq.gz 3954974557 FASTQ S28_L007_R1 unaligned CPTAC3 1dc0c8e5-af32-494f-87ce-addfc5172591 f6163e0ac884cf90fa8cb2d721a2e490 {"aliquot_tag": "ALQ_5385c9db", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.RNA-Seq.S28_L007_R2.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R2_001.fastq.gz 4879925528 FASTQ S28_L007_R2 unaligned CPTAC3 73175b4a-676f-40dc-96b1-b7acbc3193fa f456b4a5e0e3fe5634e239f97c5dc05f {"aliquot_tag": "ALQ_5385c9db", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.RNA-Seq.S31_L008_R1.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R1_001.fastq.gz 3630606497 FASTQ S31_L008_R1 unaligned CPTAC3 8f1df38c-a08a-4163-9c6f-040406b7c08b ad77b41a52b17d6e781c582ba98db759 {"aliquot_tag": "ALQ_ba46dbff", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04804.RNA-Seq.S31_L008_R2.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R2_001.fastq.gz 3982146068 FASTQ S31_L008_R2 unaligned CPTAC3 5a1d038c-27db-4d50-8c01-ac4f8468e8bf 0f499ecb349d8733b833d0c4de807dc4 {"aliquot_tag": "ALQ_ba46dbff", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04804.RNA-Seq.transcriptome.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.transcriptome.gdc_realn.bam 10752437586 BAM transcriptome harmonized CPTAC3 0e5db407-eae7-4947-9404-67d08ca6a5b1 3b1e5aaf381333bda90d4b05f835522f {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.RNA-Seq.transcriptome.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.transcriptome.gdc_realn.bam 8845654064 BAM transcriptome harmonized CPTAC3 8d8faa69-9202-4bc8-aefa-6a1d63487a66 5716f9d940b5c2f0eef807632966548c {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor"} -C3L-04804.WGS.N C3L-04804 LSCC WGS blood_normal CPT0271780002 CPT0271780002.WholeGenome.RP-2158.bam 24517687844 BAM aligned CPTAC3 499aeed9-14f5-42b9-88df-11674f74cd4c 82751da4b019be1da3a1bc87641ed38f {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04804.WGS.N.hg38 C3L-04804 LSCC WGS blood_normal CPT0271780002 94c1986f-de49-4808-92d5-59f1854e9cab_wgs_gdc_realn.bam 73420136435 BAM harmonized CPTAC3 39910c35-c8c1-48ac-bace-b2628f125c54 19794406f8bebe1b5b27128c60dd0471 {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04804.WGS.T C3L-04804 LSCC WGS tumor CPT0271660006 CPT0271660006.WholeGenome.RP-2158.bam 26118439189 BAM aligned CPTAC3 46c9466c-2837-4522-8e4c-1840013ca0c3 d1c2c48fc300fd88c6d74801962b2bb0 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor"} -C3L-04804.WGS.T.hg38 C3L-04804 LSCC WGS tumor CPT0271660006 31f213b0-bb8d-4681-b436-da192eedc9df_wgs_gdc_realn.bam 78966557835 BAM harmonized CPTAC3 c30c30ef-66ac-4d2c-8328-73abf63e57bd 297a4ef332d1cc8d284910d4e97829c8 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor"} -C3L-04804.WXS.A C3L-04804 LSCC WXS tissue_normal CPT0271710009 CPT0271710009.WholeExome.RP-1303.bam 22814879690 BAM aligned CPTAC3 03a4b125-5e5b-44da-a44f-2dd860c86cec fdc47d1aeec44d5ba9627adc9dc6e170 {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.WXS.A.hg38 C3L-04804 LSCC WXS tissue_normal CPT0271710009 9c7b6c10-7085-4d97-acbd-e1560a509892_wxs_gdc_realn.bam 31128175203 BAM harmonized CPTAC3 40a5145a-ac45-4253-bce4-261d00e900de 652a574eade0f49adf3510ae5fabe0af {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04804.WXS.N C3L-04804 LSCC WXS blood_normal CPT0271780002 CPT0271780002.WholeExome.RP-1303.bam 22508946655 BAM aligned CPTAC3 a87ada30-899e-4b11-8e64-e1899fde8ba6 9c829c6a28664a26240e046bfe04e8c1 {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04804.WXS.N.hg38 C3L-04804 LSCC WXS blood_normal CPT0271780002 94c1986f-de49-4808-92d5-59f1854e9cab_wxs_gdc_realn.bam 29874049121 BAM harmonized CPTAC3 cc2c190f-7c1d-431b-91aa-b898a70ff637 f8eb803d9015c351110a7a361aac84c9 {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal"} -C3L-04804.WXS.T C3L-04804 LSCC WXS tumor CPT0271660006 CPT0271660006.WholeExome.RP-1303.bam 30498353188 BAM aligned CPTAC3 077c315f-adf6-467b-b75b-bd1b92a79b46 b1e2df41259a700085af2d2f2623fca4 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor"} -C3L-04804.WXS.T.hg38 C3L-04804 LSCC WXS tumor CPT0271660006 31f213b0-bb8d-4681-b436-da192eedc9df_wxs_gdc_realn.bam 42185960784 BAM harmonized CPTAC3 2bdb8268-7e77-4f2f-bec1-38f36bf22c36 cddc3c5e3947eaed1fc9892daaba1aee {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor"} -C3L-04808.MethArray.Green.A C3L-04808 LSCC Methylation_Array tissue_normal CPT0298310006 204372030023_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 0a893f44-b1b3-49b9-858e-a576a8b0e5e9 68425ab20faaec4a2a66f423cd97d8cf {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.MethArray.Green.T C3L-04808 LSCC Methylation_Array tumor CPT0298280006 204372030070_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 dd647f25-d6d7-48ff-8d00-4119883237fb 9a57dd3d518fd5187ff16943882c4a80 {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor"} -C3L-04808.MethArray.Red.A C3L-04808 LSCC Methylation_Array tissue_normal CPT0298310006 204372030023_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 d71b521e-9c84-4e90-a68e-471e49715f47 bc83d3c47160dcdbef129a9bc84815a2 {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.MethArray.Red.T C3L-04808 LSCC Methylation_Array tumor CPT0298280006 204372030070_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 2d822cdd-0349-4b15-b53b-eab011821f3a 19e83254d0bea85c62d6e1cacddb84b7 {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor"} -C3L-04808.miRNA-Seq.A.hg38 C3L-04808 LSCC miRNA-Seq tissue_normal CPT0298310009 cd332395-ee37-463e-a513-2ba85b0e53d7_mirnaseq_gdc_realn.bam 247111078 BAM harmonized CPTAC3 62a18584-2c36-4648-90ea-a432266d924d 4cb0be3ccfd93c921bd16a2fa4a51ccf {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.miRNA-Seq.S16_L005_R1.A C3L-04808 LSCC miRNA-Seq tissue_normal CPT0298310009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGTAGC_S16_L005_R1_001.unaln.bam 216812686 BAM S16_L005_R1 unaligned CPTAC3 4881423a-27a3-4e27-b557-9af5bbaee921 47d2e1c1e4b5e433e094b6e4eac751cf {"aliquot_tag": "ALQ_d8b9c1bd", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.miRNA-Seq.S2_L006_R1.T C3L-04808 LSCC miRNA-Seq tumor CPT0298280009 200224_UNC31-K00269_0267_AHC722BBXY_CGATGT_S2_L006_R1_001.unaln.bam 212607497 BAM S2_L006_R1 unaligned CPTAC3 2d12e9d7-a277-463b-b314-42bafaf125f7 dc2b110d28a9dcef757cc791be0d4961 {"aliquot_tag": "ALQ_1ef57069", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04808.miRNA-Seq.T.hg38 C3L-04808 LSCC miRNA-Seq tumor CPT0298280009 6a73dd0b-52e1-4a79-90cd-ceaa7308fa70_mirnaseq_gdc_realn.bam 237118876 BAM harmonized CPTAC3 c3c82b64-0873-418e-a936-d8a3554bc586 f55db0b3df8a62099dce4efe8cae2188 {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor"} -C3L-04808.RNA-Seq.chimeric.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.chimeric.gdc_realn.bam 39894481 BAM chimeric harmonized CPTAC3 00881cab-b3d7-4c88-a2de-c1da328d0a7c 5f47580e8af7272c59f3e678d6c6f073 {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.RNA-Seq.chimeric.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.chimeric.gdc_realn.bam 57775833 BAM chimeric harmonized CPTAC3 1c58cb37-3297-45d1-bb1c-7567ff66157f 1fd16860e8d541b165df86a295353c8f {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor"} -C3L-04808.RNA-Seq.genomic.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.genomic.gdc_realn.bam 9446606319 BAM genomic harmonized CPTAC3 d1092820-550a-49fc-a300-cc50aef42e2c a7b5a64e5f7644e74fbbbb495c35f5dd {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.RNA-Seq.genomic.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.genomic.gdc_realn.bam 7615918809 BAM genomic harmonized CPTAC3 8bb03f1b-326c-40d0-8622-b6fba28eced9 453d63b084243058b0c260f565110473 {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor"} -C3L-04808.RNA-Seq.S18_L005_R1.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R1_001.fastq.gz 3879878723 FASTQ S18_L005_R1 unaligned CPTAC3 b8010249-4903-4091-9712-b2f9e90e8cc7 283ce1e0a8414047be8e44d4fb72a098 {"aliquot_tag": "ALQ_1ef57069", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04808.RNA-Seq.S18_L005_R2.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R2_001.fastq.gz 4086445798 FASTQ S18_L005_R2 unaligned CPTAC3 dc42b8fe-573c-4d61-bc51-0c05161b88c0 1230615871e493141c1ec944a7e4c3ea {"aliquot_tag": "ALQ_1ef57069", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04808.RNA-Seq.S6_L002_R1.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R1_001.fastq.gz 4288462316 FASTQ S6_L002_R1 unaligned CPTAC3 712589eb-f67d-4055-a20f-0bd599b09d5c 878f9fecbbac5f1e108a4dc59351a3c3 {"aliquot_tag": "ALQ_d8b9c1bd", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.RNA-Seq.S6_L002_R2.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R2_001.fastq.gz 5191911855 FASTQ S6_L002_R2 unaligned CPTAC3 148e8f13-4990-4215-8baa-c2cb4ab4974c 58b4f622a1e911a643c648c0350ba6d4 {"aliquot_tag": "ALQ_d8b9c1bd", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.RNA-Seq.transcriptome.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.transcriptome.gdc_realn.bam 11408164322 BAM transcriptome harmonized CPTAC3 3afa1900-c5bd-4e5f-8a8f-871e1547b5f5 e2070c4574730cdf8a101f6d2fea3518 {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.RNA-Seq.transcriptome.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.transcriptome.gdc_realn.bam 10865133117 BAM transcriptome harmonized CPTAC3 4792290d-6c64-4371-b6ba-6cbeea0b15cb d16d90680cd14b2a5c550541cc4c72c0 {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor"} -C3L-04808.WGS.N C3L-04808 LSCC WGS blood_normal CPT0298360002 CPT0298360002.WholeGenome.RP-2158.bam 19153558988 BAM aligned CPTAC3 bc7092fd-2f78-4f61-b9cc-0571ac6e2812 5e58f468cab4bd0e5ad298f7aecdfed5 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal"} -C3L-04808.WGS.N.hg38 C3L-04808 LSCC WGS blood_normal CPT0298360002 c15ee2a6-727a-430d-b7c0-61dc832d0dc9_wgs_gdc_realn.bam 57262199273 BAM harmonized CPTAC3 a78e3b98-6eae-4067-858e-c2a3835b7b21 954d6476a753f3ea0802b02ff45d9c74 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal"} -C3L-04808.WGS.T C3L-04808 LSCC WGS tumor CPT0298280006 CPT0298280006.WholeGenome.RP-2158.bam 22740077927 BAM aligned CPTAC3 258726c5-7312-4eff-a525-63dfeff141c5 667e24695ffcf1eb133936afb9c82ebe {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor"} -C3L-04808.WGS.T.hg38 C3L-04808 LSCC WGS tumor CPT0298280006 d9661c5a-e609-4b7a-8ddf-03ee137c8ab6_wgs_gdc_realn.bam 68211453696 BAM harmonized CPTAC3 59d4d215-4562-4cab-b497-130d60b73149 92aa05bc63bc4894350445099c026f1f {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor"} -C3L-04808.WXS.A C3L-04808 LSCC WXS tissue_normal CPT0298310006 CPT0298310006.WholeExome.RP-1303.bam 23872272738 BAM aligned CPTAC3 617170fe-5a59-4c2e-acbd-227eaf287127 a7defe434ec43c38eae48e08a43733d7 {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.WXS.A.hg38 C3L-04808 LSCC WXS tissue_normal CPT0298310006 ec796afb-11ce-457e-858a-23dd50105e7c_wxs_gdc_realn.bam 32486226498 BAM harmonized CPTAC3 b8b776e7-8ea1-4738-906f-f74fd2e90f08 a5f133e275211216dd2274197e3241e5 {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04808.WXS.N C3L-04808 LSCC WXS blood_normal CPT0298360002 CPT0298360002.WholeExome.RP-1303.bam 22364477269 BAM aligned CPTAC3 3ef92f33-9e03-413c-aa5a-4552b10e873d 669fe91040cbf0cb68c588312ccfd023 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal"} -C3L-04808.WXS.N.hg38 C3L-04808 LSCC WXS blood_normal CPT0298360002 c15ee2a6-727a-430d-b7c0-61dc832d0dc9_wxs_gdc_realn.bam 30061205588 BAM harmonized CPTAC3 6e147259-ebe3-49f3-8352-fa450a059630 a28cef33d9693496fef5a2fe4babd6c8 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal"} -C3L-04808.WXS.T C3L-04808 LSCC WXS tumor CPT0298280006 CPT0298280006.WholeExome.RP-1303.bam 33141914649 BAM aligned CPTAC3 5f9c8604-7238-485a-9b95-4cdc6cbc499c 6248e1c18d1f9706b3056f32e4d29c38 {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor"} -C3L-04808.WXS.T.hg38 C3L-04808 LSCC WXS tumor CPT0298280006 d9661c5a-e609-4b7a-8ddf-03ee137c8ab6_wxs_gdc_realn.bam 44530671372 BAM harmonized CPTAC3 dc233d63-d074-4c61-862a-486ccb88bc73 ab805bac50d82f508cd755900751126d {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor"} -C3L-04844.MethArray.Green.T C3L-04844 HNSCC Methylation_Array tumor CPT0248330006 203281980233_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e45f6d83-945e-436a-a1e2-e9994cc45655 541cc27721a6ce26a2f5bf82a31e694b {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor"} -C3L-04844.MethArray.Red.T C3L-04844 HNSCC Methylation_Array tumor CPT0248330006 203281980233_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 1430a45c-97d4-4ebe-a68c-cdb7ec4114bd 581d11b6a8aaa3d618d88c8085954db5 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor"} -C3L-04844.miRNA-Seq.S44_L007_R1.T C3L-04844 HNSCC miRNA-Seq tumor CPT0248330009 190228_UNC32-K00270_0151_AHYLY3BBXX_TATAAT_S44_L007_R1_001.unaln.bam 253673217 BAM S44_L007_R1 unaligned CPTAC3 bd348995-2ed0-41cf-a231-f551265d1311 918065cefd2c914cf50a650be7010dd9 {"aliquot_tag": "ALQ_397c870c", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04844.miRNA-Seq.T.hg38 C3L-04844 HNSCC miRNA-Seq tumor CPT0248330009 d1629195-a43e-4a0f-bb20-a5f7371b0c0c_mirnaseq_gdc_realn.bam 283633542 BAM harmonized CPTAC3 58b4b314-5a6e-4aee-b455-e5171c4b83c5 aac996f7498d059f853dbc328f24bbab {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor"} -C3L-04844.RNA-Seq.chimeric.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.chimeric.gdc_realn.bam 35296017 BAM chimeric harmonized CPTAC3 cd1155b0-83ac-4b88-b8e5-212f251849bb be3245ecfd5271525fcc496c632b59af {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor"} -C3L-04844.RNA-Seq.genomic.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.genomic.gdc_realn.bam 10139308398 BAM genomic harmonized CPTAC3 67c2bb48-7baf-4910-9a42-08365964558f 483abf9efbd153126f75ac988e184167 {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor"} -C3L-04844.RNA-Seq.S20_L005_R1.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4787124941 FASTQ S20_L005_R1 unaligned CPTAC3 6765873c-3b79-4afe-a8e1-f783348fbb2e 81082e1cbfa10dade3d57f2fa25782ef {"aliquot_tag": "ALQ_397c870c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04844.RNA-Seq.S20_L005_R2.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 5510419498 FASTQ S20_L005_R2 unaligned CPTAC3 3a99719b-9806-4c7f-8fbb-7ca27b3c509b 1b22f2a2e0a507f77367d618ec727d29 {"aliquot_tag": "ALQ_397c870c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04844.RNA-Seq.transcriptome.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.transcriptome.gdc_realn.bam 13310109132 BAM transcriptome harmonized CPTAC3 533651bd-51d7-4319-8477-898167bc01de b7a3009e91d05aeafc49a8fd422a91ba {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor"} -C3L-04844.WGS.N C3L-04844 HNSCC WGS blood_normal CPT0248360002 CPT0248360002.WholeGenome.RP-1303.bam 66940859292 BAM aligned CPTAC3 ad0ffde8-f5f0-4538-a713-02908329b98a e0b8f69a747a6be52fab7973441299c1 {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-04844.WGS.N.hg38 C3L-04844 HNSCC WGS blood_normal CPT0248360002 161b063d-d8ab-4135-aad8-d40fc65b7a2c_wgs_gdc_realn.bam 98908625191 BAM harmonized CPTAC3 910211a0-2824-4eff-bfe5-94088ea3cec4 02ab2561e2b621a6a8c37f3b006df0ca {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-04844.WGS.T C3L-04844 HNSCC WGS tumor CPT0248330006 CPT0248330006.WholeGenome.RP-1303.bam 71495044177 BAM aligned CPTAC3 cfe92973-dacb-434c-ae0a-fae867d8bf68 c10f0f29e6b6f301dff3efa49da8dcb1 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor"} -C3L-04844.WGS.T.hg38 C3L-04844 HNSCC WGS tumor CPT0248330006 1303ac4b-aff0-4982-a3ba-8c792a57db03_wgs_gdc_realn.bam 105376839083 BAM harmonized CPTAC3 4a848f93-6b9d-49e6-94d7-bccf2554d728 8070e49c5e910f0f249a0270a3431aac {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor"} -C3L-04844.WXS.N C3L-04844 HNSCC WXS blood_normal CPT0248360002 CPT0248360002.WholeExome.RP-1303.bam 25030966918 BAM aligned CPTAC3 0040babd-c709-416d-84c8-5fb7764ce7bc 623edcead9a6b8154e852e848cff9a1b {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-04844.WXS.N.hg38 C3L-04844 HNSCC WXS blood_normal CPT0248360002 161b063d-d8ab-4135-aad8-d40fc65b7a2c_wxs_gdc_realn.bam 34068454037 BAM harmonized CPTAC3 2b72ad7c-f5eb-4d4d-84dc-21d7da20105f e21ac2c45e8010857574d8fcd2079956 {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal"} -C3L-04844.WXS.T C3L-04844 HNSCC WXS tumor CPT0248330006 CPT0248330006.WholeExome.RP-1303.bam 23453192865 BAM aligned CPTAC3 fe04c506-6b7f-46df-8794-c2fe05ac61ca 575cb6bc4cb5d778b5c185306b4d6d95 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor"} -C3L-04844.WXS.T.hg38 C3L-04844 HNSCC WXS tumor CPT0248330006 1303ac4b-aff0-4982-a3ba-8c792a57db03_wxs_gdc_realn.bam 32437416289 BAM harmonized CPTAC3 bffd3d74-c0dc-4702-954f-f94a3da41c39 4c0a1215c4e006ecafc9c087ac1023f3 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor"} -C3L-04848.MethArray.Green.T C3L-04848 PDA Methylation_Array tumor CPT0248410007 203561620091_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 59b2b18a-5a6e-4a99-8eb1-3738de1c1513 71cbc03171855911593ad9bd54acb2fb {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04848.MethArray.Red.T C3L-04848 PDA Methylation_Array tumor CPT0248410007 203561620091_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 c949fa1f-723b-410f-bef5-469dffaa187e 42cb2c9e310e5ed530610766d0864128 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04848.miRNA-Seq.S32_L004_R1.T C3L-04848 PDA miRNA-Seq tumor CPT0248410010 190813_UNC32-K00270_0196_AH5MCWBBXY_TTAGGC_S32_L004_R1_001.unaln.bam 274553753 BAM S32_L004_R1 unaligned CPTAC3 43902004-3c77-4930-b075-0b6ba0c2819e 8b5c687c3b29755ab7240bad7b433407 {"aliquot_tag": "ALQ_3e7e6d31", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04848.miRNA-Seq.T.hg38 C3L-04848 PDA miRNA-Seq tumor CPT0248410010 9c67645b-7aa7-4ac9-a27e-de76bd6efc1f_mirnaseq_gdc_realn.bam 309366108 BAM harmonized CPTAC3 aa24d00b-2681-4765-9aee-2efb715b162e 551f8323915b5a4bdbfe611704e2f08e {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor"} -C3L-04848.RNA-Seq.chimeric.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.chimeric.gdc_realn.bam 225981709 BAM chimeric harmonized CPTAC3 1e0ab33a-3860-4ddb-a974-38b14fc7dfda 8f880451d87f1aa234766eefae0945fd {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor"} -C3L-04848.RNA-Seq.genomic.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.genomic.gdc_realn.bam 14027444354 BAM genomic harmonized CPTAC3 cef11416-0142-42a0-8744-1c6ebdd43af9 8c21efb66b12c9ba1e691c8226d19c45 {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor"} -C3L-04848.RNA-Seq.S33_L008_R1.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R1_001.fastq.gz 5465136410 FASTQ S33_L008_R1 unaligned CPTAC3 c4c2a1e1-dc6a-4438-84dc-c69b56ab3cbe ff68d0309a37e5e898a83a17e9d99b79 {"aliquot_tag": "ALQ_3e7e6d31", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04848.RNA-Seq.S33_L008_R2.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R2_001.fastq.gz 5588271010 FASTQ S33_L008_R2 unaligned CPTAC3 ee7e05a9-2134-40f8-9aa5-53fa23fc2ef3 da35269271c061501965ff50165fed8b {"aliquot_tag": "ALQ_3e7e6d31", "sample": "S33", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04848.RNA-Seq.transcriptome.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.transcriptome.gdc_realn.bam 11536542743 BAM transcriptome harmonized CPTAC3 94b456db-eb70-4b0c-a75e-85abd7c0370a a4a5e4e328fdbea949522eacbd577187 {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor"} -C3L-04848.Targeted.T C3L-04848 PDA Targeted_Sequencing tumor CPT0248410007 CPT0248410007.CustomSelection.RP-1303.PDO-18786.bam 5039641210 BAM aligned CPTAC3 75cb9ef1-744a-4562-84a8-d17d6676f4a2 39d23a4ed29bd744da10c972ab9afb59 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04848.Targeted.T.hg38 C3L-04848 PDA Targeted_Sequencing tumor CPT0248410007 4d3b3837-9e79-472a-addf-9f37a7e0deeb_targetedsequencing_gdc_realn.bam 7295885657 BAM harmonized CPTAC3 2f2045a7-cab6-4535-ae12-a2ab7c96d572 c6034c624e3e07adb366e6d2c9fe9a67 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04848.WGS.N C3L-04848 PDA WGS blood_normal CPT0248450002 CPT0248450002.WholeGenome.RP-1303.bam 58748260177 BAM aligned CPTAC3 f7aa7ac7-a1dd-4d72-88d2-a254064d15c7 4f09c26bd0d28f1782bfe6869e129d1d {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04848.WGS.N.hg38 C3L-04848 PDA WGS blood_normal CPT0248450002 1b6a186d-ab81-4f64-9195-de05919416c5_wgs_gdc_realn.bam 87670539885 BAM harmonized CPTAC3 9af855cd-317f-4fc4-b229-f24227fce90f 0ab566d89e6c988cdf063514c5095220 {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04848.WGS.T C3L-04848 PDA WGS tumor CPT0248410007 CPT0248410007.WholeGenome.RP-1303.bam 66961518368 BAM aligned CPTAC3 ce239504-3820-4ce3-a40d-517cc57c1ad6 6745da026121e3f01fcea488db9b0b15 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04848.WGS.T.hg38 C3L-04848 PDA WGS tumor CPT0248410007 4d3b3837-9e79-472a-addf-9f37a7e0deeb_wgs_gdc_realn.bam 95933291618 BAM harmonized CPTAC3 e606f1b4-42de-4cdd-9c07-68c710282420 200b97b0828a94db76ae222ed9bd9397 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04848.WXS.N C3L-04848 PDA WXS blood_normal CPT0248450002 CPT0248450002.WholeExome.RP-1303.bam 24608798007 BAM aligned CPTAC3 2e9b9269-2e18-49f9-9ce8-c9e53d57a968 67bf97d416e0ebcbb72a8e126794bf98 {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04848.WXS.N.hg38 C3L-04848 PDA WXS blood_normal CPT0248450002 1b6a186d-ab81-4f64-9195-de05919416c5_wxs_gdc_realn.bam 33886130558 BAM harmonized CPTAC3 10fbded9-2f0a-4fbb-82d8-2e529947d74d f08b1f3a5be580ef7d87f373dc4f62f6 {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04848.WXS.T C3L-04848 PDA WXS tumor CPT0248410007 CPT0248410007.WholeExome.RP-1303.bam 45729993027 BAM aligned CPTAC3 c847de01-ab0e-4ecb-95ac-bb68b9829dc1 acf0cfb8ba2be476a6b1a7bcb9527eb9 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04848.WXS.T.hg38 C3L-04848 PDA WXS tumor CPT0248410007 4d3b3837-9e79-472a-addf-9f37a7e0deeb_wxs_gdc_realn.bam 64656654276 BAM harmonized CPTAC3 17dd08c9-cba7-489c-bf03-08ca54793c6c e7cab8cf1e229e8dc41adff000633387 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor"} -C3L-04849.MethArray.Green.T C3L-04849 HNSCC Methylation_Array tumor CPT0248520006 203271740111_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 adbe175d-cf8b-4210-8dea-b61473eee470 f80f5a38313cf8464069e4352330f5e5 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor"} -C3L-04849.MethArray.Red.T C3L-04849 HNSCC Methylation_Array tumor CPT0248520006 203271740111_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 eeb0a369-a062-426d-ba5d-267da4b88ae8 46c47d90afcb87ecbda81fce231ccccb {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor"} -C3L-04849.miRNA-Seq.S45_L007_R1.T C3L-04849 HNSCC miRNA-Seq tumor CPT0248520009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L007_R1_001.unaln.bam 166507573 BAM S45_L007_R1 unaligned CPTAC3 6fb44401-917f-4026-871f-085b5b86fd79 2fd14da0ea2b4223a9b89d44e7617d76 {"aliquot_tag": "ALQ_d2454da1", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04849.miRNA-Seq.T.hg38 C3L-04849 HNSCC miRNA-Seq tumor CPT0248520009 ef929482-6acb-45aa-8561-4988dbea1fe8_mirnaseq_gdc_realn.bam 187534696 BAM harmonized CPTAC3 de1cd91b-c98f-4fd9-8d0e-ef185501a4f3 beda049bcff84b8cffdbfd628d2f320e {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.chimeric.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.chimeric.gdc_realn.bam 30188762 BAM chimeric harmonized CPTAC3 e0b6407e-e383-482e-800c-a6494c9ffa47 305e9d2fae677f0ea3e00f745602d2f1 {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.chimeric.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.chimeric.gdc_realn.bam 13527124 BAM chimeric harmonized CPTAC3 213b9b52-a13c-4bfa-923e-e7c6343574bf 6532d8a17aa8ad339097139c0c5262b5 {"aliquot_tag": "ALQ_f40f0a23", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.genomic.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.genomic.gdc_realn.bam 9212222282 BAM genomic harmonized CPTAC3 28f81636-4e46-4c5e-9088-db04e34b64ce 6b26d9e8fa2ed9cb4a6eb220e6d30387 {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.genomic.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.genomic.gdc_realn.bam 4065327610 BAM genomic harmonized CPTAC3 a9cab4c8-fecc-4e6d-a0e9-5516cd4eec4a a5bff3c6f594de3c63fa54e2f2a9d914 {"aliquot_tag": "ALQ_f40f0a23", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.S23_L006_R1.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R1_001.fastq.gz 4296837003 FASTQ S23_L006_R1 unaligned CPTAC3 1477efe0-e758-4814-9202-918d9456d63c ea2302e08ccae3d4154df27f18e1ce13 {"aliquot_tag": "ALQ_d2454da1", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.S23_L006_R2.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R2_001.fastq.gz 4922773030 FASTQ S23_L006_R2 unaligned CPTAC3 0739385d-e93f-4da7-89d1-8d0ed8d74071 2220a4ec37c0d699004b590ea47e7fe0 {"aliquot_tag": "ALQ_d2454da1", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.S65_R1.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R1_001.fastq.gz 1648171727 FASTQ S65_R1 unaligned CPTAC3 34ac1a8a-6177-4064-b7aa-75875511e6bb 325f4981a05da56b7d80814e7e8d60eb {"aliquot_tag": "ALQ_f40f0a23", "sample": "S65", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.S65_R2.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R2_001.fastq.gz 1805612075 FASTQ S65_R2 unaligned CPTAC3 a0f945ea-cd4d-4071-8b46-cbcd65dd52d7 4152cb84729ddcde56311ddb0147c13e {"aliquot_tag": "ALQ_f40f0a23", "sample": "S65", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.transcriptome.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.transcriptome.gdc_realn.bam 12688041222 BAM transcriptome harmonized CPTAC3 2ae99f51-06e5-4483-ae45-03b076547278 b93d5ce02080231a3727d1f69f804cb0 {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor"} -C3L-04849.RNA-Seq.transcriptome.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.transcriptome.gdc_realn.bam 2176541295 BAM transcriptome harmonized CPTAC3 3ca4d944-ac88-4c38-ac94-658e86358ecf a1a700669890db5f84ac443093abe7b5 {"aliquot_tag": "ALQ_f40f0a23", "gdc_sample_type": "Primary Tumor"} -C3L-04849.WGS.N C3L-04849 HNSCC WGS blood_normal CPT0248540002 CPT0248540002.WholeGenome.RP-1303.bam 74762683950 BAM aligned CPTAC3 e349ea49-7cfc-4176-9c3e-5cd208ff7154 684312c493971a6ce6a7dce8cc7aadab {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal"} -C3L-04849.WGS.N.hg38 C3L-04849 HNSCC WGS blood_normal CPT0248540002 0d55ab95-104a-4c9f-bb3e-db6ec1ccc1dc_wgs_gdc_realn.bam 108508363635 BAM harmonized CPTAC3 914419b2-d11f-4f3e-9fc1-6bc5baeecefe 43e1d7e66a50a984ade2a62c5a150075 {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal"} -C3L-04849.WGS.T C3L-04849 HNSCC WGS tumor CPT0248520006 CPT0248520006.WholeGenome.RP-1303.bam 58831635028 BAM aligned CPTAC3 5b66bd63-cdc4-45fb-b632-b45bcc883f69 d8b5568754fd83cbeb4ed53b2355e8f7 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor"} -C3L-04849.WGS.T.hg38 C3L-04849 HNSCC WGS tumor CPT0248520006 30383780-fec1-44e6-90a3-ef9c68d6ff62_wgs_gdc_realn.bam 85682682298 BAM harmonized CPTAC3 a6498926-c298-4bc8-bfca-450dc0eb891a a42a1ab21005d8d9e5b3c3d40fee4154 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor"} -C3L-04849.WXS.N C3L-04849 HNSCC WXS blood_normal CPT0248540002 CPT0248540002.WholeExome.RP-1303.bam 22744368936 BAM aligned CPTAC3 6c9acd6d-82a9-4a4b-9d98-b59aede4aed8 5223677c2129ca7b51b09fbb2aa3d1f6 {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal"} -C3L-04849.WXS.N.hg38 C3L-04849 HNSCC WXS blood_normal CPT0248540002 0d55ab95-104a-4c9f-bb3e-db6ec1ccc1dc_wxs_gdc_realn.bam 30881296043 BAM harmonized CPTAC3 3744bc44-9084-45da-b7c7-2e7828543253 fe7d6261fd5f21a77777db93826f19e7 {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal"} -C3L-04849.WXS.T C3L-04849 HNSCC WXS tumor CPT0248520006 CPT0248520006.WholeExome.RP-1303.bam 27405595855 BAM aligned CPTAC3 c52819fa-7cd0-4595-9374-9514d954bccc 67589ee826ece6a0e3da431420b332d3 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor"} -C3L-04849.WXS.T.hg38 C3L-04849 HNSCC WXS tumor CPT0248520006 30383780-fec1-44e6-90a3-ef9c68d6ff62_wxs_gdc_realn.bam 37082418849 BAM harmonized CPTAC3 c7aaa9a3-ba8b-46b8-9920-e0705df5e08b 56bfb7420cf9b89c1c00876baf2997dd {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor"} -C3L-04853.MethArray.Green.T C3L-04853 PDA Methylation_Array tumor CPT0248590007 203561620040_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4a442826-7472-43d2-8334-fa2ec540706c 75e963f9cb68ebc3d64551628d2397ad {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor"} -C3L-04853.MethArray.Red.T C3L-04853 PDA Methylation_Array tumor CPT0248590007 203561620040_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 aec562be-400c-4604-b456-1302bee009c4 236e241ce0d92e17594194e272957a80 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor"} -C3L-04853.miRNA-Seq.S28_L003_R1.T C3L-04853 PDA miRNA-Seq tumor CPT0248590014 190813_UNC32-K00270_0196_AH5MCWBBXY_TAATCG_S28_L003_R1_001.unaln.bam 268137016 BAM S28_L003_R1 unaligned CPTAC3 c03edc80-eb0e-417f-9c74-af4c2eb4e647 68c08f1c4ad3e45ea404d0b06d1ede74 {"aliquot_tag": "ALQ_c23f314c", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04853.miRNA-Seq.T.hg38 C3L-04853 PDA miRNA-Seq tumor CPT0248590014 46eab201-0f73-4464-9739-5620e92e5e05_mirnaseq_gdc_realn.bam 301461258 BAM harmonized CPTAC3 6276085d-68b3-4cb0-b4d4-e79967a5934d a7d5d0c2eb41d16e016f71a03a46a2e6 {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor"} -C3L-04853.RNA-Seq.chimeric.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.chimeric.gdc_realn.bam 33082938 BAM chimeric harmonized CPTAC3 a06ac415-de69-4400-a2d7-b66c922a4454 ca15bddc5d1683ce5aaac9524ace5c61 {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor"} -C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.genomic.gdc_realn.bam 8945283527 BAM genomic harmonized CPTAC3 b15b88de-7cde-4646-b3f8-80f77b77da0c decbc759091e805b602c4024bfec0c5a {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor"} -C3L-04853.RNA-Seq.S20_L005_R1.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R1_001.fastq.gz 4212126039 FASTQ S20_L005_R1 unaligned CPTAC3 eb075015-1db4-4ac0-b1e9-b44fcf3026f9 0b31c616dde5cc051a99cda4e6edcbe7 {"aliquot_tag": "ALQ_c23f314c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04853.RNA-Seq.S20_L005_R2.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R2_001.fastq.gz 4349159879 FASTQ S20_L005_R2 unaligned CPTAC3 b447e253-da71-4eca-8d57-bbfbc0d80095 dd28a2d91ee4763f145c2898878d1294 {"aliquot_tag": "ALQ_c23f314c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04853.RNA-Seq.transcriptome.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.transcriptome.gdc_realn.bam 11848205357 BAM transcriptome harmonized CPTAC3 98c29263-cbdb-4b22-962d-f765e68c743d bf90d80aa4386b2947756c05c219f237 {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor"} -C3L-04853.WGS.N C3L-04853 PDA WGS blood_normal CPT0248630002 CPT0248630002.WholeGenome.RP-1303.bam 76911837341 BAM aligned CPTAC3 c17a8761-2d9b-46e8-a57a-ed13aa858641 fb74c218a3e6622670214dba165c428d {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal"} -C3L-04853.WGS.N.hg38 C3L-04853 PDA WGS blood_normal CPT0248630002 bade3320-65ef-4e7b-82af-e3a0f2a88a55_wgs_gdc_realn.bam 113456877658 BAM harmonized CPTAC3 048bd256-f280-4b1b-96f6-c3c55614fa35 66e3f5e24485b7a337d0cd1f5d542f77 {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal"} -C3L-04853.WGS.T C3L-04853 PDA WGS tumor CPT0248590007 CPT0248590007.WholeGenome.RP-1303.PDO-18613.bam 122195170831 BAM aligned CPTAC3 ff16a800-1444-4676-adbc-d24c74aa30cc 1c1b43dc67a5e7df58dc1b3eec573a60 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor"} -C3L-04853.WGS.T.hg38 C3L-04853 PDA WGS tumor CPT0248590007 e37b44f0-ad8b-4afd-b48b-67cc920c40cf_wgs_gdc_realn.bam 178397735894 BAM harmonized CPTAC3 b55e752a-e1d0-4ac8-8d6d-c28b1ee96967 15c1a778480f53f22bb00714f97de968 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor"} -C3L-04853.WXS.N C3L-04853 PDA WXS blood_normal CPT0248630002 CPT0248630002.WholeExome.RP-1303.bam 38841189666 BAM aligned CPTAC3 4c6e5991-5deb-4c9e-af73-d222982c343d ccc675972d06729bf29654f40bea4f55 {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal"} -C3L-04853.WXS.N.hg38 C3L-04853 PDA WXS blood_normal CPT0248630002 bade3320-65ef-4e7b-82af-e3a0f2a88a55_wxs_gdc_realn.bam 53219857139 BAM harmonized CPTAC3 e3a0b7fe-90dd-4b1a-9003-385c4c89e2b1 42b6ddaae5e1ad1c3ec069c9f75fa347 {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal"} -C3L-04853.WXS.T C3L-04853 PDA WXS tumor CPT0248590007 CPT0248590007.WholeExome.RP-1303.bam 23614864966 BAM aligned CPTAC3 652bb21c-ced9-46fe-b597-4792844c1a08 93706d05ef251fb839fd161207f34669 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor"} -C3L-04853.WXS.T.hg38 C3L-04853 PDA WXS tumor CPT0248590007 e37b44f0-ad8b-4afd-b48b-67cc920c40cf_wxs_gdc_realn.bam 32034799026 BAM harmonized CPTAC3 20d82c66-380d-4984-8ee1-a5c5b8d34867 66792b11ee9914b88f40c6e66b832248 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor"} -C3L-04854.MethArray.Green.A C3L-04854 LSCC Methylation_Array tissue_normal CPT0289170006 204367490151_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 6b55ff23-676f-4ab5-9562-ce28749fdd10 e280cddf564b746cb4f49c8bb1665761 {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.MethArray.Green.T C3L-04854 LSCC Methylation_Array tumor CPT0289110007 204372030070_R05C01_Grn.idat 13677904 IDAT Green NA CPTAC3 ec37335c-ba8f-4892-b093-e93aeb699b9f 14f22aa632f0b4a4cbc7812dd1c3b184 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor"} -C3L-04854.MethArray.Red.A C3L-04854 LSCC Methylation_Array tissue_normal CPT0289170006 204367490151_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 0812e217-aa0e-4004-aae1-35a95bdc9b13 9fd562434a496db14c28e13b2f7c584c {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.MethArray.Red.T C3L-04854 LSCC Methylation_Array tumor CPT0289110007 204372030070_R05C01_Red.idat 13677904 IDAT Red NA CPTAC3 aecaf259-ee6a-4062-a125-5c4c0c44e978 5dbdd2f57ab8ef98aeb8ada38fa57458 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor"} -C3L-04854.miRNA-Seq.A.hg38 C3L-04854 LSCC miRNA-Seq tissue_normal CPT0289170009 89f35920-847b-4909-90fc-a1f7c160e93b_mirnaseq_gdc_realn.bam 186654989 BAM harmonized CPTAC3 db87d560-cdc5-48dc-bbf8-b64617a751e9 ab29d4a244ff83ad137ce25b3aa1fa86 {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.miRNA-Seq.S21_L006_R1.T C3L-04854 LSCC miRNA-Seq tumor CPT0289110010 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L006_R1_001.unaln.bam 206767089 BAM S21_L006_R1 unaligned CPTAC3 118327e9-ff5c-47c9-a0ca-98b91e75522e abb15b0eb11e19d384b775d7557942dc {"aliquot_tag": "ALQ_9f6be279", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04854.miRNA-Seq.S27_L006_R1.A C3L-04854 LSCC miRNA-Seq tissue_normal CPT0289170009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATTCCT_S27_L006_R1_001.unaln.bam 164233246 BAM S27_L006_R1 unaligned CPTAC3 1a6394b8-50ba-4ce2-a2e3-d4daff47e7af 867861623cbdd892fbd0b28dedb1eb13 {"aliquot_tag": "ALQ_70ec9e3c", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.miRNA-Seq.T.hg38 C3L-04854 LSCC miRNA-Seq tumor CPT0289110010 a8301e68-62f5-42b0-8341-500158c05709_mirnaseq_gdc_realn.bam 227836886 BAM harmonized CPTAC3 68c3a257-3fc8-4f4e-836b-917de6e58879 695f9659a6cb830ad63e1e618cd480b8 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor"} -C3L-04854.RNA-Seq.chimeric.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.chimeric.gdc_realn.bam 32235044 BAM chimeric harmonized CPTAC3 dba17d1a-8ba2-491e-bfbf-6ba9fc770067 90bbd14eea83278de51d4983470eceb0 {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.RNA-Seq.chimeric.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.chimeric.gdc_realn.bam 56932370 BAM chimeric harmonized CPTAC3 28bf046e-4e7a-4357-9b8d-966e899fa7b2 0a3e4c35c03eb33c191149583fb50c33 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor"} -C3L-04854.RNA-Seq.genomic.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.genomic.gdc_realn.bam 8738337425 BAM genomic harmonized CPTAC3 890b8b0c-59f9-4d68-852e-c15b8edf8242 710a7920d505147ba6506d6980470855 {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.RNA-Seq.genomic.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.genomic.gdc_realn.bam 7450621065 BAM genomic harmonized CPTAC3 61246977-36d9-438d-8420-38b5af605ce9 e6f4d059b5b0ee391ef6ebeda13685b7 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor"} -C3L-04854.RNA-Seq.S10_L003_R1.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 3975190285 FASTQ S10_L003_R1 unaligned CPTAC3 e210dc35-2884-413e-bf8b-e12fd56ba168 c60a4e62bb8b150c8aaea353f6096edb {"aliquot_tag": "ALQ_70ec9e3c", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.RNA-Seq.S10_L003_R2.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 4833262411 FASTQ S10_L003_R2 unaligned CPTAC3 45b60f43-be80-4b02-a2cf-edcac84968c4 e91ce44002f569984bab5d48c91982ac {"aliquot_tag": "ALQ_70ec9e3c", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.RNA-Seq.S5_L002_R1.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R1_001.fastq.gz 3631461374 FASTQ S5_L002_R1 unaligned CPTAC3 f6dedc7f-4441-4178-b55f-33b8c3fa5d3c 92753ed5456798ff2af1d16062eae30c {"aliquot_tag": "ALQ_9f6be279", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04854.RNA-Seq.S5_L002_R2.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R2_001.fastq.gz 3882433863 FASTQ S5_L002_R2 unaligned CPTAC3 edbb4e5b-328b-4b64-86be-375330e674b2 f878dbef818e5fd9c3208c54cbd5f0ef {"aliquot_tag": "ALQ_9f6be279", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04854.RNA-Seq.transcriptome.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.transcriptome.gdc_realn.bam 9408570265 BAM transcriptome harmonized CPTAC3 b55fc703-e183-49f4-86f6-ef34a135429a 62a08c2378b9c9d063e0e4a146acab2c {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.RNA-Seq.transcriptome.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.transcriptome.gdc_realn.bam 10324545444 BAM transcriptome harmonized CPTAC3 60c84eb0-b43a-4078-9a77-d2352f4d2b3d c8ad7fc1781279e097002f7b674ac540 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor"} -C3L-04854.WGS.N C3L-04854 LSCC WGS blood_normal CPT0289270002 CPT0289270002.WholeGenome.RP-2158.bam 21471712355 BAM aligned CPTAC3 8fd6041b-d9aa-4c0c-9a42-b324dd126928 dc0d2145665b3eca46ae8dd5b7b4e083 {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04854.WGS.N.hg38 C3L-04854 LSCC WGS blood_normal CPT0289270002 d6b4852d-f75b-437d-9a33-41f25cad0437_wgs_gdc_realn.bam 63989641478 BAM harmonized CPTAC3 4e87e15b-8d04-47e2-a208-34ad0ecedaed ace79db7e563705380fea35dffe19c20 {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04854.WGS.T C3L-04854 LSCC WGS tumor CPT0289110007 CPT0289110007.WholeGenome.RP-2158.bam 26573114416 BAM aligned CPTAC3 3b05623a-f6f5-414e-a24f-69e4673d0f80 dbaea88b7ce683d70b9639b8c18a18dc {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor"} -C3L-04854.WGS.T.hg38 C3L-04854 LSCC WGS tumor CPT0289110007 e5c108a5-8b09-4dd6-9273-e5da4f818bf7_wgs_gdc_realn.bam 79050662634 BAM harmonized CPTAC3 8724bd37-e8e2-4f2f-b8e9-ef1912d56040 6bda9fbcefe5fb80429ce48bbcb055f8 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor"} -C3L-04854.WXS.A C3L-04854 LSCC WXS tissue_normal CPT0289170006 CPT0289170006.WholeExome.RP-1303.bam 23690888225 BAM aligned CPTAC3 a3a27570-5661-417c-ab92-4d3c14981786 359c80946a3bb98b00247ccca057d13c {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.WXS.A.hg38 C3L-04854 LSCC WXS tissue_normal CPT0289170006 d0a51ed0-023e-4cb9-98b6-b3e9d8506e56_wxs_gdc_realn.bam 31628931831 BAM harmonized CPTAC3 973beea9-9f9e-4347-ab4d-cec59f0c339a 1ffd4d08f65c3e02c6592a783ba30adb {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04854.WXS.N C3L-04854 LSCC WXS blood_normal CPT0289270002 CPT0289270002.WholeExome.RP-1303.bam 29328801530 BAM aligned CPTAC3 c4c7123f-a7cd-4f73-8748-bcb9d7a8514c ae675666fb12cdc5566003c2b8b4521d {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04854.WXS.N.hg38 C3L-04854 LSCC WXS blood_normal CPT0289270002 d6b4852d-f75b-437d-9a33-41f25cad0437_wxs_gdc_realn.bam 40191864113 BAM harmonized CPTAC3 57ccf1be-8feb-4992-90ba-f98d83de8cef 7ba86561852c74ce88f374b979979ba6 {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal"} -C3L-04854.WXS.T C3L-04854 LSCC WXS tumor CPT0289110007 CPT0289110007.WholeExome.RP-1303.bam 18756010392 BAM aligned CPTAC3 8bb58c6a-a3d3-4ee1-b412-95cde0ac0a92 dc729e5f3bfbd0349e7beb06d8c0e342 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor"} -C3L-04854.WXS.T.hg38 C3L-04854 LSCC WXS tumor CPT0289110007 e5c108a5-8b09-4dd6-9273-e5da4f818bf7_wxs_gdc_realn.bam 25966154756 BAM harmonized CPTAC3 390887a6-da2a-44f1-819b-7e99aaf481f9 e562ec6a28ad6f1c0adb144e6cf47070 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor"} -C3L-04856.MethArray.Green.A C3L-04856 LSCC Methylation_Array tissue_normal CPT0289420006 204372030164_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f4b0058f-7c6e-4fa9-98b7-f851b413c4c9 1bb00a16cf4d7cd0a51a64399c13e000 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04856.MethArray.Green.T C3L-04856 LSCC Methylation_Array tumor CPT0289330006 204372030011_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 d274d45b-abf3-4910-b93d-d9bd1eb3f98c 1695947026472ade545d0835715d9ddd {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor"} -C3L-04856.MethArray.Red.A C3L-04856 LSCC Methylation_Array tissue_normal CPT0289420006 204372030164_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 523100fc-f66b-449e-acd2-f7e3859d91e8 0af499cd20970b11e629b92772dd3558 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04856.MethArray.Red.T C3L-04856 LSCC Methylation_Array tumor CPT0289330006 204372030011_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 a417653b-cd5d-4a0c-a818-5e2588f57466 14c4f606b1e3e47d19694a175c65d232 {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor"} -C3L-04856.miRNA-Seq.S22_L006_R1.T C3L-04856 LSCC miRNA-Seq tumor CPT0289330009 200224_UNC31-K00269_0267_AHC722BBXY_CGTACG_S22_L006_R1_001.unaln.bam 163739169 BAM S22_L006_R1 unaligned CPTAC3 efee3a28-4d65-4e74-96b9-21e26cd127ed 46c119dc81545e48c679dae2353f659e {"aliquot_tag": "ALQ_c8a499f7", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04856.miRNA-Seq.T.hg38 C3L-04856 LSCC miRNA-Seq tumor CPT0289330009 fad7449c-b011-455d-b9e2-b9e9d574a013_mirnaseq_gdc_realn.bam 179281313 BAM harmonized CPTAC3 9032c90a-56e2-4cc5-9842-00c46b88da37 72a9edfcc04dd277827d7e2c9a76a728 {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor"} -C3L-04856.RNA-Seq.chimeric.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.chimeric.gdc_realn.bam 47201994 BAM chimeric harmonized CPTAC3 90a5f1e8-7915-4877-800d-e68d3746c30a ab7ed9f634470740bd6586c5134ecbfb {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor"} -C3L-04856.RNA-Seq.genomic.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.genomic.gdc_realn.bam 7861630886 BAM genomic harmonized CPTAC3 4f54d8f4-b16d-41ad-ab9c-0117f0b49b5c 308483727a408945bd59f47c340e7ed7 {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor"} -C3L-04856.RNA-Seq.S6_L002_R1.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R1_001.fastq.gz 3782200705 FASTQ S6_L002_R1 unaligned CPTAC3 9f9f631e-d684-4940-88d5-2e80f0feac26 58944e11bd5eb5479a3300e42dad7ebe {"aliquot_tag": "ALQ_c8a499f7", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04856.RNA-Seq.S6_L002_R2.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R2_001.fastq.gz 3990363868 FASTQ S6_L002_R2 unaligned CPTAC3 ae42bf00-7b1c-4d7d-95eb-bf93b4d1a727 157a153208caf15e47d974da669f1e01 {"aliquot_tag": "ALQ_c8a499f7", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04856.RNA-Seq.transcriptome.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.transcriptome.gdc_realn.bam 8869230389 BAM transcriptome harmonized CPTAC3 0ec489da-8b1b-4f50-879c-a9af84284ff4 5f20e2b0cacfbcfddbf1f40fc129f57d {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor"} -C3L-04856.WGS.N C3L-04856 LSCC WGS blood_normal CPT0289530002 CPT0289530002.WholeGenome.RP-2158.bam 25005609704 BAM aligned CPTAC3 d41c4029-eb6d-41d2-a618-08cbbaa1111d 716e3f51bee1f6324276b305a87c588f {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal"} -C3L-04856.WGS.N.hg38 C3L-04856 LSCC WGS blood_normal CPT0289530002 6aef6afc-a1f6-4f73-978f-39455316c95a_wgs_gdc_realn.bam 73268514213 BAM harmonized CPTAC3 7cda4212-99fa-42df-937b-7eb1e7f90ad3 28813f0abe7169d5789ce204712bc0c8 {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal"} -C3L-04856.WGS.T C3L-04856 LSCC WGS tumor CPT0289330006 CPT0289330006.WholeGenome.RP-2158.bam 25366672311 BAM aligned CPTAC3 cac3d6d7-8dad-43ee-b596-bd3098f022ab a6624dbee473cb543459876601eac0fc {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor"} -C3L-04856.WGS.T.hg38 C3L-04856 LSCC WGS tumor CPT0289330006 efa93229-0fa2-44fb-8ff0-71219ba65905_wgs_gdc_realn.bam 74056184684 BAM harmonized CPTAC3 910050cb-db5c-462d-83df-055da02b27a4 4ae868b2b788c00b86525b6dd25ae27e {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor"} -C3L-04856.WXS.A C3L-04856 LSCC WXS tissue_normal CPT0289420006 CPT0289420006.WholeExome.RP-1303.bam 22425950194 BAM aligned CPTAC3 cf0b8a54-81a7-4124-9ad2-3c19d59899ef 1cc0185b8e268a420a209e65fe6b4c11 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04856.WXS.A.hg38 C3L-04856 LSCC WXS tissue_normal CPT0289420006 feb43bc8-51fc-4309-8281-3c7b2dc42ad9_wxs_gdc_realn.bam 30602145463 BAM harmonized CPTAC3 b86619ab-5263-4f8c-b3c5-19a17635df0c 9c515b302ee5c8e5d46115cff30765d8 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04856.WXS.N C3L-04856 LSCC WXS blood_normal CPT0289530002 CPT0289530002.WholeExome.RP-1303.bam 20472371739 BAM aligned CPTAC3 cd99199b-d8e6-453c-8d3b-60048b35d7cf 019b253466beef75af2aaa4a3d4c8f60 {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal"} -C3L-04856.WXS.N.hg38 C3L-04856 LSCC WXS blood_normal CPT0289530002 6aef6afc-a1f6-4f73-978f-39455316c95a_wxs_gdc_realn.bam 27623198221 BAM harmonized CPTAC3 613f6785-6688-4179-8ac7-42e7ac35e143 1cd89a6c2db9c85d5720cf0bcc1514f9 {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal"} -C3L-04856.WXS.T C3L-04856 LSCC WXS tumor CPT0289330006 CPT0289330006.WholeExome.RP-1303.bam 23213915949 BAM aligned CPTAC3 329e4d21-54cf-40e4-82e4-c17b18f08fc4 1a15e43c2d266897b5d917f3e1e49fd8 {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor"} -C3L-04856.WXS.T.hg38 C3L-04856 LSCC WXS tumor CPT0289330006 efa93229-0fa2-44fb-8ff0-71219ba65905_wxs_gdc_realn.bam 31605958614 BAM harmonized CPTAC3 d899d02d-c03d-4684-9e9f-0315fa30638d be3553e605b3c5129a508043846a9715 {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor"} -C3L-04861.MethArray.Green.A C3L-04861 LSCC Methylation_Array tissue_normal CPT0289600006 204372030015_R08C01_Grn.idat 13677905 IDAT Green NA CPTAC3 63f1057c-e7c8-4718-af64-f4f4cffd33e1 baba16d22cf5a837dc3cc5341b175714 {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.MethArray.Green.T C3L-04861 LSCC Methylation_Array tumor CPT0289560006 204367470127_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 16ad53c3-1fd0-4dc1-acd3-0592b7c08650 e94412dc153d4d1a168f4618bc011cd8 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor"} -C3L-04861.MethArray.Red.A C3L-04861 LSCC Methylation_Array tissue_normal CPT0289600006 204372030015_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 909b8915-b483-431a-9533-9f5d64fba92f 42a2de2a6e1b46e9a199eb3a9b5775b5 {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.MethArray.Red.T C3L-04861 LSCC Methylation_Array tumor CPT0289560006 204367470127_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 cc62b838-a265-45cb-8cbc-90827a2d07ba 1b486122fa59f6d26b44e0376f409d63 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor"} -C3L-04861.miRNA-Seq.A.hg38 C3L-04861 LSCC miRNA-Seq tissue_normal CPT0289600009 3cb84c11-8a0a-41e5-b48c-12f7b52d2090_mirnaseq_gdc_realn.bam 211138254 BAM harmonized CPTAC3 b537707b-8c8c-4229-9b42-8158fa6051a2 eafc16e5dc28d95971544e96e46b7345 {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.miRNA-Seq.S23_L006_R1.T C3L-04861 LSCC miRNA-Seq tumor CPT0289560009 200224_UNC31-K00269_0267_AHC722BBXY_GAGTGG_S23_L006_R1_001.unaln.bam 221384567 BAM S23_L006_R1 unaligned CPTAC3 ee37b7d7-4671-4821-8af8-f3d82d44b75c e51e102d79a0d134792a2b2a7dac2407 {"aliquot_tag": "ALQ_d61df59a", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04861.miRNA-Seq.S28_L006_R1.A C3L-04861 LSCC miRNA-Seq tissue_normal CPT0289600009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAAAAG_S28_L006_R1_001.unaln.bam 192533018 BAM S28_L006_R1 unaligned CPTAC3 1d068a4b-e9dd-461e-a738-a0dd8024e6e5 df66f78ed00140d78c75073af0ed75e7 {"aliquot_tag": "ALQ_dfc97294", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.miRNA-Seq.T.hg38 C3L-04861 LSCC miRNA-Seq tumor CPT0289560009 0518d91d-2768-49a4-b339-76e2b83bcf49_mirnaseq_gdc_realn.bam 248559750 BAM harmonized CPTAC3 300fabe3-599e-4e41-9474-88a23f44dad2 2b3412877b91faa6256d02c75391ceb7 {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor"} -C3L-04861.RNA-Seq.chimeric.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.chimeric.gdc_realn.bam 30194602 BAM chimeric harmonized CPTAC3 c31d582b-2aec-43aa-bfd8-cf3e78f7a1a8 6bddedc60085cc8ddb8c3e691cf23902 {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.RNA-Seq.chimeric.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.chimeric.gdc_realn.bam 51094141 BAM chimeric harmonized CPTAC3 68cb1593-90fd-47ad-85d8-30f6c1710a94 25cb7ec5c2bbbc671d6b1edd72539f6a {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor"} -C3L-04861.RNA-Seq.genomic.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.genomic.gdc_realn.bam 9464112658 BAM genomic harmonized CPTAC3 1a0b5923-38eb-4145-b147-634ff8f0e6af 5a5328c1943ecd5d35d1fece867cdb0a {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.RNA-Seq.genomic.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.genomic.gdc_realn.bam 7826236685 BAM genomic harmonized CPTAC3 31ea4ec5-dfba-47be-8da7-ad3fab8c0a00 7b50b7591324ff70e0bf3a3dedda0672 {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor"} -C3L-04861.RNA-Seq.S12_L003_R1.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 4056010431 FASTQ S12_L003_R1 unaligned CPTAC3 e383fa02-0d44-4d97-a7ca-a5f047102b98 93661a0bcae87dba473af0a9bf1d9f30 {"aliquot_tag": "ALQ_dfc97294", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.RNA-Seq.S12_L003_R2.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 5075923519 FASTQ S12_L003_R2 unaligned CPTAC3 ecc97835-799a-456c-9901-244f0947c7eb 3f25e75ed5361b4d842728be1581b087 {"aliquot_tag": "ALQ_dfc97294", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.RNA-Seq.S7_L002_R1.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R1_001.fastq.gz 3796378318 FASTQ S7_L002_R1 unaligned CPTAC3 4740154b-84b2-4e0b-89ba-a8acf8a35938 e2235773bf574fe1adcc8a5973402622 {"aliquot_tag": "ALQ_d61df59a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04861.RNA-Seq.S7_L002_R2.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R2_001.fastq.gz 4044369499 FASTQ S7_L002_R2 unaligned CPTAC3 3753c93c-35c0-43a3-b8b7-6d8a7a8ab028 5b11a1b70af90e32aaf849ca08aa64ec {"aliquot_tag": "ALQ_d61df59a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04861.RNA-Seq.transcriptome.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.transcriptome.gdc_realn.bam 10556649114 BAM transcriptome harmonized CPTAC3 d0f65683-f372-47a7-8194-062ff3d24843 76f595c1c585eb8333f4fc88bd15ad47 {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.RNA-Seq.transcriptome.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.transcriptome.gdc_realn.bam 12337923939 BAM transcriptome harmonized CPTAC3 8a0b4f45-c652-49a3-afea-4ec4aec03c15 65256f6333996b9ed28af5b47b2da0c5 {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor"} -C3L-04861.WGS.N C3L-04861 LSCC WGS blood_normal CPT0289710002 CPT0289710002.WholeGenome.RP-2158.bam 29698919285 BAM aligned CPTAC3 9aa41222-d684-4b66-943f-d0fd3ffc3bea df9c00f331129cccb664535c9bf52122 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal"} -C3L-04861.WGS.N.hg38 C3L-04861 LSCC WGS blood_normal CPT0289710002 587a77b0-d172-490c-991d-1c6fdcb4c093_wgs_gdc_realn.bam 88702414451 BAM harmonized CPTAC3 189d7b19-780a-4bcc-ab76-aa8fc677b27b bdce1bb876b05f2023241d13afcd2484 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal"} -C3L-04861.WGS.T C3L-04861 LSCC WGS tumor CPT0289560006 CPT0289560006.WholeGenome.RP-2158.bam 25594847520 BAM aligned CPTAC3 eabdf2c8-2b33-4fbd-b0ea-d8009e308a5a 7382caf9f788977f6092f892de968cfd {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor"} -C3L-04861.WGS.T.hg38 C3L-04861 LSCC WGS tumor CPT0289560006 a70a2f42-2ae8-48b7-bb9e-db2dfe15c8c4_wgs_gdc_realn.bam 74453335894 BAM harmonized CPTAC3 fa24097d-6c63-4b2e-8c7c-aeee3b72050b 89f7c66bd90ef19ca7106fc30e40d2a0 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor"} -C3L-04861.WXS.A C3L-04861 LSCC WXS tissue_normal CPT0289600006 CPT0289600006.WholeExome.RP-1303.bam 23272794108 BAM aligned CPTAC3 f2360740-03ae-4f37-9f1e-11d4e0d8c637 58a5ea16d803d72b1a26a6a3f1ca32eb {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.WXS.A.hg38 C3L-04861 LSCC WXS tissue_normal CPT0289600006 58f678b8-aa2f-46e5-89dc-4157983eecdb_wxs_gdc_realn.bam 32667561717 BAM harmonized CPTAC3 58fc0da6-091b-4cd9-8951-10490ecf430b 7124a10e55468bba8e2f46a80c6ad6ed {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04861.WXS.N C3L-04861 LSCC WXS blood_normal CPT0289710002 CPT0289710002.WholeExome.RP-1303.bam 22124582605 BAM aligned CPTAC3 5e00461d-6514-4ecc-a086-0d23f0a835fc 74f0e3fcc35363629ffe9f955f58e3d6 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal"} -C3L-04861.WXS.N.hg38 C3L-04861 LSCC WXS blood_normal CPT0289710002 587a77b0-d172-490c-991d-1c6fdcb4c093_wxs_gdc_realn.bam 30420957349 BAM harmonized CPTAC3 c8a222b1-e796-4b55-bdbc-0bffaab03f4b 11efa03711f2906a143262d1dfc77617 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal"} -C3L-04861.WXS.T C3L-04861 LSCC WXS tumor CPT0289560006 CPT0289560006.WholeExome.RP-1303.bam 51283462008 BAM aligned CPTAC3 c0292300-627b-47fa-b345-d5917aad7901 5369bc1b8829dfe787be7703936817c9 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor"} -C3L-04861.WXS.T.hg38 C3L-04861 LSCC WXS tumor CPT0289560006 a70a2f42-2ae8-48b7-bb9e-db2dfe15c8c4_wxs_gdc_realn.bam 72106346821 BAM harmonized CPTAC3 74f96a42-a935-4011-9d1b-f85b0836be95 a009ed00e30001b360d411e4dc118a0a {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor"} -C3L-04866.MethArray.Green.A C3L-04866 LSCC Methylation_Array tissue_normal CPT0255430006 204372030014_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 5c7f9cfb-3277-4224-9da4-1ca638f619ad 1ef69c3451320013a59365805d8baf85 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.MethArray.Green.T C3L-04866 LSCC Methylation_Array tumor CPT0255420006 204367490043_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e63e12b6-7efc-4637-acba-c77fd4ef5cba d73e40d2d1257cdd5b5fd5e062b0a909 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor"} -C3L-04866.MethArray.Red.A C3L-04866 LSCC Methylation_Array tissue_normal CPT0255430006 204372030014_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 4668ffdc-523f-46e1-bfd9-40a3307111c6 51a6ad373eed4d21d2de50820f24ce46 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.MethArray.Red.T C3L-04866 LSCC Methylation_Array tumor CPT0255420006 204367490043_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 f7b7ae72-a175-4708-a3c6-045d03a9bf11 e053c703e750b0407ff7ad772ea386c7 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor"} -C3L-04866.miRNA-Seq.A.hg38 C3L-04866 LSCC miRNA-Seq tissue_normal CPT0255430009 3b9e7be4-230a-4520-82c3-18578f83600f_mirnaseq_gdc_realn.bam 315603629 BAM harmonized CPTAC3 8d8a3cbc-fec8-4f1c-9810-15c31e7f9d4d 8f03ec188dbce0f3060e4b6c07ad3ee6 {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.miRNA-Seq.S14_L007_R1.A C3L-04866 LSCC miRNA-Seq tissue_normal CPT0255430009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GCCAAT_S14_L007_R1_001.unaln.bam 283938365 BAM S14_L007_R1 unaligned CPTAC3 ec164068-73da-46d7-a9b8-c29bd6da8a71 dcb1219d0ac51641088f0d7461b68533 {"aliquot_tag": "ALQ_8904d6ea", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.miRNA-Seq.S42_L007_R1.T C3L-04866 LSCC miRNA-Seq tumor CPT0255420009 200224_UNC31-K00269_0267_AHC722BBXY_TAATCG_S42_L007_R1_001.unaln.bam 223534305 BAM S42_L007_R1 unaligned CPTAC3 289c7cfb-7486-45ce-96a2-5d8ea64bf3c4 972acd4739d7db17e74483319a50723c {"aliquot_tag": "ALQ_b464ff5a", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04866.miRNA-Seq.T.hg38 C3L-04866 LSCC miRNA-Seq tumor CPT0255420009 4c804429-afc8-4c00-bb4e-ede228b64183_mirnaseq_gdc_realn.bam 248946602 BAM harmonized CPTAC3 9e19915a-8e6b-444e-97a7-8b544fa2fc2d eb15aa9dd138d6d3b3c65ff1251c49ce {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor"} -C3L-04866.RNA-Seq.chimeric.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.chimeric.gdc_realn.bam 89293528 BAM chimeric harmonized CPTAC3 7b974317-a643-4569-8e4a-e3b37b7bfe96 842571d56f628955cc14e931d7d7b18f {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.RNA-Seq.chimeric.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.chimeric.gdc_realn.bam 31104220 BAM chimeric harmonized CPTAC3 d621c9df-0bdd-4314-8616-0fdb7900d39f 61f8d84719132cd28d1a7d632440d56f {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor"} -C3L-04866.RNA-Seq.genomic.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.genomic.gdc_realn.bam 7679577844 BAM genomic harmonized CPTAC3 1385e0a9-459a-4ca4-8f92-7a76ad97ceb2 83762129b58fc64743f40fadaa76fc1b {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.RNA-Seq.genomic.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.genomic.gdc_realn.bam 7931975771 BAM genomic harmonized CPTAC3 f8a32cea-38e3-4d01-ad79-aada97780c58 9a268b33a9689863cc579ce70fcdce54 {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor"} -C3L-04866.RNA-Seq.S10_L003_R1.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3879397988 FASTQ S10_L003_R1 unaligned CPTAC3 6bde87a0-821b-4c0d-8346-f9ec89d3ee6e 80775610a6d3669eb25a4a5f0be6d990 {"aliquot_tag": "ALQ_b464ff5a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04866.RNA-Seq.S10_L003_R2.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4125265787 FASTQ S10_L003_R2 unaligned CPTAC3 d07eefdf-b5cf-4d00-a0d5-a808bfe25fb8 177b539a139fec558cf58b6ac7def804 {"aliquot_tag": "ALQ_b464ff5a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04866.RNA-Seq.S8_L002_R1.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R1_001.fastq.gz 3747384627 FASTQ S8_L002_R1 unaligned CPTAC3 20067dc4-1b7a-433b-8261-91bf2ba952fe fad0bf47fdd6147b3b89ad27de582ee6 {"aliquot_tag": "ALQ_8904d6ea", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.RNA-Seq.S8_L002_R2.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R2_001.fastq.gz 4197482715 FASTQ S8_L002_R2 unaligned CPTAC3 3f986b3d-e2bc-42b9-a91e-7c3969a6177f d8a08371866c1665ec5373a2a8a114ef {"aliquot_tag": "ALQ_8904d6ea", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.RNA-Seq.transcriptome.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.transcriptome.gdc_realn.bam 9424415884 BAM transcriptome harmonized CPTAC3 49b80667-238e-48da-828f-34435468c882 831f6a1ce1fce6fa75d50a6ace322a83 {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.RNA-Seq.transcriptome.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.transcriptome.gdc_realn.bam 10318638609 BAM transcriptome harmonized CPTAC3 5bf9a606-5857-46de-8799-cb10da5850fc 25388e6255234661173bf89b53cf5300 {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor"} -C3L-04866.WGS.N C3L-04866 LSCC WGS blood_normal CPT0269240002 CPT0269240002.WholeGenome.RP-2158.bam 26984518666 BAM aligned CPTAC3 2b508c6c-a82b-4f70-8ed9-13b2b879c134 4eff9bf9b7241f3d4f784b418cf0cd3b {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04866.WGS.N.hg38 C3L-04866 LSCC WGS blood_normal CPT0269240002 70bb1e58-a17c-4f61-b263-94f490da2e9c_wgs_gdc_realn.bam 79600797309 BAM harmonized CPTAC3 f11a5195-8153-43a1-ba5b-681000d65a1c 12604376025bda452257fca560a2d44b {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04866.WGS.T C3L-04866 LSCC WGS tumor CPT0255420006 CPT0255420006.WholeGenome.RP-2158.bam 23735728134 BAM aligned CPTAC3 c9ed18a4-a511-40d9-8298-875409a6d59c 374b84550f2fb631f25882bace0185e6 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor"} -C3L-04866.WGS.T.hg38 C3L-04866 LSCC WGS tumor CPT0255420006 9bf9f218-3b59-4645-8b74-292e13639580_wgs_gdc_realn.bam 67519279374 BAM harmonized CPTAC3 56041f11-39a5-4bad-b4c8-76cdbe79669f fbe2fa37253805fa3c66cef5043fc7f4 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor"} -C3L-04866.WXS.A C3L-04866 LSCC WXS tissue_normal CPT0255430006 CPT0255430006.WholeExome.RP-1303.bam 23365117645 BAM aligned CPTAC3 036ce600-c131-4ad3-8126-ebe4d05f7c75 38d1156231ce6de0e7894f151fe2cf93 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.WXS.A.hg38 C3L-04866 LSCC WXS tissue_normal CPT0255430006 2a2a78e1-9176-445d-b7ee-3d64e447f2f7_wxs_gdc_realn.bam 31648118470 BAM harmonized CPTAC3 9aee0ebf-0489-4b79-b3ed-747fdc8c5ab5 1845184a0db11097c433c50dffe35905 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04866.WXS.N C3L-04866 LSCC WXS blood_normal CPT0269240002 CPT0269240002.WholeExome.RP-1303.bam 22476834793 BAM aligned CPTAC3 75894906-be52-4c8d-b1b6-d3a66f1bc0cb 197728f1696ddd62209278a610fa1b2e {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04866.WXS.N.hg38 C3L-04866 LSCC WXS blood_normal CPT0269240002 70bb1e58-a17c-4f61-b263-94f490da2e9c_wxs_gdc_realn.bam 30038333441 BAM harmonized CPTAC3 5ba04105-6184-4797-b365-49604344df4d 2cf98d006a63a4bac2031507bfdd2d24 {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal"} -C3L-04866.WXS.T C3L-04866 LSCC WXS tumor CPT0255420006 CPT0255420006.WholeExome.RP-1303.bam 26538230408 BAM aligned CPTAC3 53874e57-a335-46a3-8671-91486bf009ae 1cbe5daceca839beff8b123199836d15 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor"} -C3L-04866.WXS.T.hg38 C3L-04866 LSCC WXS tumor CPT0255420006 9bf9f218-3b59-4645-8b74-292e13639580_wxs_gdc_realn.bam 36022078736 BAM harmonized CPTAC3 c613e327-ccef-48c7-bedc-0019ba76e48f 498df45aab9b27b085e5b77de52e92fe {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor"} -C3L-04868.MethArray.Green.A C3L-04868 LSCC Methylation_Array tissue_normal CPT0252960009 204372030087_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0ed412ef-4d86-4ed7-9c43-634aaf1efa9f e44e6e718ad62444d2d301a01aa9230e {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.MethArray.Green.T C3L-04868 LSCC Methylation_Array tumor CPT0252940006 204367470127_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 d75357bd-58ea-4ff9-9876-b01879ae480f 073b7231bda119a35e9f9986574e4fbb {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor"} -C3L-04868.MethArray.Red.A C3L-04868 LSCC Methylation_Array tissue_normal CPT0252960009 204372030087_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 1f6f12e7-2763-4bb9-a9f8-193e11ffcbc5 ba9352701dc23b2ed833abdb988a4dec {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.MethArray.Red.T C3L-04868 LSCC Methylation_Array tumor CPT0252940006 204367470127_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 44c8d7f4-e656-444b-a342-8d795d7d57fa e6192b64d8f3a98b47c7d3aef9746519 {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor"} -C3L-04868.miRNA-Seq.A.hg38 C3L-04868 LSCC miRNA-Seq tissue_normal CPT0252960006 d6d02fe9-3a3d-4b62-9aaa-80a844da95e6_mirnaseq_gdc_realn.bam 254167565 BAM harmonized CPTAC3 335b0781-fda3-487c-bb57-9226bba9e7b3 e6b8a3f51cafb3b9178b8c715e91240b {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.miRNA-Seq.S27_L007_R1.T C3L-04868 LSCC miRNA-Seq tumor CPT0252940009 200224_UNC31-K00269_0267_AHC722BBXY_ATTCCT_S27_L007_R1_001.unaln.bam 161639240 BAM S27_L007_R1 unaligned CPTAC3 7823198e-6569-4c0f-ac30-ae521fd6123e d591e14b843b0059ec03ee1d18433d51 {"aliquot_tag": "ALQ_421d27aa", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04868.miRNA-Seq.S41_L006_R1.A C3L-04868 LSCC miRNA-Seq tissue_normal CPT0252960006 200513_UNC31-K00269_0278_BHH7Y7BBXY_GACGAC_S41_L006_R1_001.unaln.bam 229147650 BAM S41_L006_R1 unaligned CPTAC3 7bc9357c-d17b-4034-8e11-2b8e39d42f8a 0fb6949f1589194ba723723c14b244be {"aliquot_tag": "ALQ_a862695b", "sample": "S41", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.miRNA-Seq.T.hg38 C3L-04868 LSCC miRNA-Seq tumor CPT0252940009 7654ed03-dff3-467b-890a-0cebb7fc8d59_mirnaseq_gdc_realn.bam 177255435 BAM harmonized CPTAC3 e34edbcc-2412-4df0-b80e-5e125f746d02 d77ad88dd1a1c2596e373d68a2c02bfc {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor"} -C3L-04868.RNA-Seq.chimeric.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.chimeric.gdc_realn.bam 39185371 BAM chimeric harmonized CPTAC3 960b3f47-ada2-45f3-985d-7cd0b1887672 6bb7cf6cbae45bb1db53ec10ed135d2b {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.RNA-Seq.chimeric.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.chimeric.gdc_realn.bam 40273929 BAM chimeric harmonized CPTAC3 3483cef9-abff-4744-bee3-901006e0c79b 325535c31b4873e75b9659260b43aac1 {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor"} -C3L-04868.RNA-Seq.genomic.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.genomic.gdc_realn.bam 9681721150 BAM genomic harmonized CPTAC3 fe96a236-c72e-48b8-9268-61e86c8de8b7 e39644e2e174a0bd24080f8d02d33680 {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.RNA-Seq.genomic.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.genomic.gdc_realn.bam 7564997586 BAM genomic harmonized CPTAC3 509432e6-0777-4a50-95bb-13f494926f75 50ff5867e95f143bc2274c9b22741f46 {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor"} -C3L-04868.RNA-Seq.S11_L003_R1.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R1_001.fastq.gz 3691927643 FASTQ S11_L003_R1 unaligned CPTAC3 ca162531-b8ee-4f2d-9e6b-1b62145949d4 e414b3abe16d769d1ef931d0b761b653 {"aliquot_tag": "ALQ_421d27aa", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04868.RNA-Seq.S11_L003_R2.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R2_001.fastq.gz 4102057523 FASTQ S11_L003_R2 unaligned CPTAC3 ef34ca3b-b988-42ce-afb5-6c263eaf3e20 0cc17af699af383f132701cda1658ce0 {"aliquot_tag": "ALQ_421d27aa", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04868.RNA-Seq.S26_L007_R1.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R1_001.fastq.gz 4515297792 FASTQ S26_L007_R1 unaligned CPTAC3 d631702e-a9e8-428f-94f6-af371554432e 415ee39c97237621ff3362fb36348a94 {"aliquot_tag": "ALQ_a862695b", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.RNA-Seq.S26_L007_R2.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R2_001.fastq.gz 5456454667 FASTQ S26_L007_R2 unaligned CPTAC3 b3cb045f-cbee-4b2b-a2b7-b9240a36b6b5 ddb2b811332f65df3927e030ff3f55a6 {"aliquot_tag": "ALQ_a862695b", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.RNA-Seq.transcriptome.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.transcriptome.gdc_realn.bam 11564778033 BAM transcriptome harmonized CPTAC3 add2061d-b119-4a56-b726-076e84b42bb2 da256c6f7fe82046410adfc402405a33 {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.RNA-Seq.transcriptome.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.transcriptome.gdc_realn.bam 9349751464 BAM transcriptome harmonized CPTAC3 5ff2c5ff-b652-4c0a-92ce-c4ec6219e4e7 88aed4350834f2cda7f17a5e83dc94fd {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor"} -C3L-04868.WGS.N C3L-04868 LSCC WGS blood_normal CPT0253060002 CPT0253060002.WholeGenome.RP-2158.bam 23500774792 BAM aligned CPTAC3 9ca33398-5326-4ee7-9909-9a76de2d2683 37f9c2c350375dea3326b87fe1cb5cf2 {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04868.WGS.N.hg38 C3L-04868 LSCC WGS blood_normal CPT0253060002 391d5226-dbaa-4631-961b-cc74dfb50e18_wgs_gdc_realn.bam 69484426572 BAM harmonized CPTAC3 ddc24ca0-210e-492c-bd82-a8896da3c6a1 a24b10c816b908ae9b66b0c4af7c8754 {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04868.WGS.T C3L-04868 LSCC WGS tumor CPT0252940006 CPT0252940006.WholeGenome.RP-2158.bam 23172859578 BAM aligned CPTAC3 caec68e3-a988-41fe-8dc4-05c366488121 4614ff3a75f78d1ce1fd2e2b13a2b30d {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor"} -C3L-04868.WGS.T.hg38 C3L-04868 LSCC WGS tumor CPT0252940006 43603349-f8cc-43ba-b8ce-6c6662369372_wgs_gdc_realn.bam 67272381958 BAM harmonized CPTAC3 be8f3dad-edd3-4543-8f20-ed43e68d8186 b5de721ac27de353fc74726a9c07a6ae {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor"} -C3L-04868.WXS.A C3L-04868 LSCC WXS tissue_normal CPT0252960009 CPT0252960009.WholeExome.RP-1303.bam 18743101513 BAM aligned CPTAC3 69133439-edb8-4013-b444-d766796ce35c 14a64ca2e064684fb7048fc099df6843 {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.WXS.A.hg38 C3L-04868 LSCC WXS tissue_normal CPT0252960009 f787d0d4-1a25-4da9-ab7d-9c1c0628d612_wxs_gdc_realn.bam 25228950286 BAM harmonized CPTAC3 aa45e31c-eab1-4077-b34d-77a041abf1e1 0a55272f46420edaee0a5ca305509e65 {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04868.WXS.N C3L-04868 LSCC WXS blood_normal CPT0253060002 CPT0253060002.WholeExome.RP-1303.bam 24951127155 BAM aligned CPTAC3 2491ecfb-6336-4fa0-b5eb-581b588495d8 2d2b560698b551be71e14e1dd9d0a79f {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04868.WXS.N.hg38 C3L-04868 LSCC WXS blood_normal CPT0253060002 391d5226-dbaa-4631-961b-cc74dfb50e18_wxs_gdc_realn.bam 34464959688 BAM harmonized CPTAC3 a2400fed-591a-440c-bf4f-b81b0e1812f3 9cb7e3a9b8fa1fa7a5cddb3f4b9f09bf {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04868.WXS.T C3L-04868 LSCC WXS tumor CPT0252940006 CPT0252940006.WholeExome.RP-1303.bam 33625447274 BAM aligned CPTAC3 30eddb31-76cc-4c0b-8056-b03330a09caf 6d1bb56b0ec5aa759a5560d88f93c425 {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor"} -C3L-04868.WXS.T.hg38 C3L-04868 LSCC WXS tumor CPT0252940006 43603349-f8cc-43ba-b8ce-6c6662369372_wxs_gdc_realn.bam 47266817828 BAM harmonized CPTAC3 9ee8ec6e-c9bb-4f78-a9f6-f59c6ed235bd 9ca78e5d4a995a9be67bd8e63014276d {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor"} -C3L-04871.MethArray.Green.A C3L-04871 LSCC Methylation_Array tissue_normal CPT0269330006 204367470124_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0b4175c0-2ab7-49fb-a533-7024a82ef2b1 16733685c6ac610279effb19006b63c6 {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.MethArray.Green.T C3L-04871 LSCC Methylation_Array tumor CPT0269290006 204372030014_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 32751113-f246-4791-800e-c0caec030a00 a90e576d60cd31ebaba1d8fa51ed7db1 {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor"} -C3L-04871.MethArray.Red.A C3L-04871 LSCC Methylation_Array tissue_normal CPT0269330006 204367470124_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 ceef0ca1-63c8-476d-9997-7e8c0ba9151a 64426b4cd63b60f22d0fd9d935f7489e {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.MethArray.Red.T C3L-04871 LSCC Methylation_Array tumor CPT0269290006 204372030014_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 f563850b-462f-491b-8751-b39eed7af436 6803fe7126965b7fe21671854033385f {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor"} -C3L-04871.miRNA-Seq.A.hg38 C3L-04871 LSCC miRNA-Seq tissue_normal CPT0269330009 16ed3190-9dda-495c-9a6d-dc8a828f90cc_mirnaseq_gdc_realn.bam 230850515 BAM harmonized CPTAC3 b6000134-a5e8-4077-b0ec-b1cc2873261b b123983d7b9a6d7d8ea15f392c27c4fc {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.miRNA-Seq.S16_L006_R1.T C3L-04871 LSCC miRNA-Seq tumor CPT0269290009 200224_UNC31-K00269_0267_AHC722BBXY_CCGTCC_S16_L006_R1_001.unaln.bam 234950644 BAM S16_L006_R1 unaligned CPTAC3 34936c80-5618-4d8a-90d3-9b5f7bc41058 011ad2bcce7cf2d36eb8fbd22b0c86e2 {"aliquot_tag": "ALQ_5cc240c1", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04871.miRNA-Seq.S18_L007_R1.A C3L-04871 LSCC miRNA-Seq tissue_normal CPT0269330009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTCCGC_S18_L007_R1_001.unaln.bam 205922092 BAM S18_L007_R1 unaligned CPTAC3 7c17aea3-17e9-46a0-b752-a0567717d3a8 00f8c1f363b9eb0de447cfca7ed5a86b {"aliquot_tag": "ALQ_dd2e8bc5", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.miRNA-Seq.T.hg38 C3L-04871 LSCC miRNA-Seq tumor CPT0269290009 24271d4a-6e19-46f7-8245-4d6400a9d39f_mirnaseq_gdc_realn.bam 262124518 BAM harmonized CPTAC3 04f16660-d92f-412e-8527-c062f7de85b7 8eba84ab61d26e91d518c77fd21dbe5b {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor"} -C3L-04871.RNA-Seq.chimeric.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.chimeric.gdc_realn.bam 93425193 BAM chimeric harmonized CPTAC3 784ed70a-8ffd-4626-b41d-49c9bc15392c b502437dc6eda0f8802f8e6416b48dfd {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.RNA-Seq.chimeric.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.chimeric.gdc_realn.bam 67663833 BAM chimeric harmonized CPTAC3 187d6264-0ad9-4c9e-b5fa-2c14e82edfe2 fa3acf0bd7e9931aa89909588330b28d {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor"} -C3L-04871.RNA-Seq.genomic.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.genomic.gdc_realn.bam 7422995654 BAM genomic harmonized CPTAC3 c9eeb07d-9460-4170-b6dc-28ec26c570f2 59a075280f55cc1e14212da1b334ad80 {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.RNA-Seq.genomic.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.genomic.gdc_realn.bam 8334622161 BAM genomic harmonized CPTAC3 3b75a1ff-0bde-48d9-85d3-5e4646628ea3 b51227a8b5450ad4e706abcca7a13ebe {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor"} -C3L-04871.RNA-Seq.S19_L005_R1.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R1_001.fastq.gz 3538087308 FASTQ S19_L005_R1 unaligned CPTAC3 b37be0c1-1600-4417-bd99-db6225ce1526 0ae263c0b027ddff20d1a343a0af83ef {"aliquot_tag": "ALQ_dd2e8bc5", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.RNA-Seq.S19_L005_R2.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R2_001.fastq.gz 4032901461 FASTQ S19_L005_R2 unaligned CPTAC3 79e8deb7-9e77-452c-93ce-558f96c4c755 57e4c7cd03a0e317df5a7a7f71edaac0 {"aliquot_tag": "ALQ_dd2e8bc5", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.RNA-Seq.S32_L008_R1.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R1_001.fastq.gz 3857917556 FASTQ S32_L008_R1 unaligned CPTAC3 bcc382c1-29b4-4989-918f-69976c6a71ad 584eb0bff9ea3bde553a0f5178e7b032 {"aliquot_tag": "ALQ_5cc240c1", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04871.RNA-Seq.S32_L008_R2.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R2_001.fastq.gz 4158031134 FASTQ S32_L008_R2 unaligned CPTAC3 04cf2d38-a9fb-413a-b32a-15cfa33a2166 e9dddea653ff233157ff187040ab7887 {"aliquot_tag": "ALQ_5cc240c1", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04871.RNA-Seq.transcriptome.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.transcriptome.gdc_realn.bam 9778559892 BAM transcriptome harmonized CPTAC3 d5c9aee3-5c4f-434b-a7dc-940267eacdbf a7e10605412c9ce6d7a56ba4f7abd9dd {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.RNA-Seq.transcriptome.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.transcriptome.gdc_realn.bam 9819944785 BAM transcriptome harmonized CPTAC3 3368553b-296b-4ee5-aca4-5a7eb0ed4680 7a7fc62308bde3e1dd6bc93d19d57748 {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor"} -C3L-04871.WGS.N C3L-04871 LSCC WGS blood_normal CPT0269420002 CPT0269420002.WholeGenome.RP-2158.bam 26218863830 BAM aligned CPTAC3 2045a7d4-81e4-4716-ad5f-831917e388a7 0ef8c627e8d0301044c7fac0eb346923 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal"} -C3L-04871.WGS.N.hg38 C3L-04871 LSCC WGS blood_normal CPT0269420002 a2db28ad-4a19-4289-bb64-24390da5be1e_wgs_gdc_realn.bam 78200378403 BAM harmonized CPTAC3 e78b9def-1b4a-4c79-a3bf-0408441713a6 d06ffc1eb9aebe047c60e033f3fa6784 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal"} -C3L-04871.WGS.T C3L-04871 LSCC WGS tumor CPT0269290006 CPT0269290006.WholeGenome.RP-2158.bam 28066513578 BAM aligned CPTAC3 35033de2-00a5-40ee-9d1e-032e90fe1014 e456c88ec73fa83624bc1d7e82dfe6cf {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor"} -C3L-04871.WGS.T.hg38 C3L-04871 LSCC WGS tumor CPT0269290006 066c9bba-638b-4ffe-85ff-363bfd12f2de_wgs_gdc_realn.bam 81095957935 BAM harmonized CPTAC3 002259e0-1438-474e-9b3b-ecda15bfd01f 662ca7fe7688bf537e13cfa3fdbcd040 {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor"} -C3L-04871.WXS.A C3L-04871 LSCC WXS tissue_normal CPT0269330006 CPT0269330006.WholeExome.RP-1303.bam 27343100608 BAM aligned CPTAC3 49c31e44-7568-4eba-928c-64735b4b4eb3 d4844c35a79aa281c908d5d154865768 {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.WXS.A.hg38 C3L-04871 LSCC WXS tissue_normal CPT0269330006 eb4c530d-fe39-45b4-8d47-7b5463b841c7_wxs_gdc_realn.bam 38465184294 BAM harmonized CPTAC3 659e8768-34ca-46fe-aef4-2c0b5a470837 9d002607a0e183ab91e6bbcbfbfe9c1d {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04871.WXS.N C3L-04871 LSCC WXS blood_normal CPT0269420002 CPT0269420002.WholeExome.RP-1303.bam 22611642099 BAM aligned CPTAC3 a4da1c12-7b9e-4db7-97df-d9cd1801ba8b 81aaaec6566852fabbcf47139c9bbba5 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal"} -C3L-04871.WXS.N.hg38 C3L-04871 LSCC WXS blood_normal CPT0269420002 a2db28ad-4a19-4289-bb64-24390da5be1e_wxs_gdc_realn.bam 30561016751 BAM harmonized CPTAC3 2260ee9b-9521-4067-b1f2-2ceb8fd3a191 5ce3f776016c57979e66a3dc08721e01 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal"} -C3L-04871.WXS.T C3L-04871 LSCC WXS tumor CPT0269290006 CPT0269290006.WholeExome.RP-1303.bam 41753232816 BAM aligned CPTAC3 4937d0aa-f7c1-4a39-8e5b-55bbc9cdd16b 7c1c91f26b280ab576c64cf68725fa7b {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor"} -C3L-04871.WXS.T.hg38 C3L-04871 LSCC WXS tumor CPT0269290006 066c9bba-638b-4ffe-85ff-363bfd12f2de_wxs_gdc_realn.bam 58924308316 BAM harmonized CPTAC3 d0010b69-1f37-4ce2-8758-6674057e9616 d291f2d4f13ac2d298919461c8585dba {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor"} -C3L-04872.MethArray.Green.A C3L-04872 LSCC Methylation_Array tissue_normal CPT0268240006 204372030076_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 f0a087f3-8ee0-46b7-ac33-1e46873d58fb a823f5f5d5df942f7e89b7a3cf513928 {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.MethArray.Green.T C3L-04872 LSCC Methylation_Array tumor CPT0268190006 204367490061_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e7e6ed24-c0c6-4a79-805d-059682bece04 eae61a4d4db264ef6db9dfa74033e089 {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor"} -C3L-04872.MethArray.Red.A C3L-04872 LSCC Methylation_Array tissue_normal CPT0268240006 204372030076_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 63419a6f-57ee-4f71-9deb-ab7a9bf0c2fc 2b2bbf474399e251cee9c4c0b6d919dd {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.MethArray.Red.T C3L-04872 LSCC Methylation_Array tumor CPT0268190006 204367490061_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 55328ff0-7e0c-4919-9b55-7c7cb8fe0142 c4c3b56ed7c4abda6e2692fff2b57b6e {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor"} -C3L-04872.miRNA-Seq.A.hg38 C3L-04872 LSCC miRNA-Seq tissue_normal CPT0268240009 c65cc1b1-fbd9-4ca9-82b6-ceb5e617158c_mirnaseq_gdc_realn.bam 249589107 BAM harmonized CPTAC3 313e161e-b66f-4b25-a4a4-d6fd4fb15fb8 59fcd8b260654e7027c3c45f719d950e {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.miRNA-Seq.S17_L007_R1.A C3L-04872 LSCC miRNA-Seq tissue_normal CPT0268240009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTAGAG_S17_L007_R1_001.unaln.bam 224440633 BAM S17_L007_R1 unaligned CPTAC3 501d0a5e-e285-471a-9c77-458a48142680 b3563494f3bdcc63f095032bc37d5a0e {"aliquot_tag": "ALQ_2258fc4", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.miRNA-Seq.S31_L008_R1.T C3L-04872 LSCC miRNA-Seq tumor CPT0268190009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACGAT_S31_L008_R1_001.unaln.bam 213095930 BAM S31_L008_R1 unaligned CPTAC3 2b967150-a242-4bd8-bcbf-dde773f68376 d111fc708b724e2ebc10b8a5de7210fe {"aliquot_tag": "ALQ_7c2139db", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04872.miRNA-Seq.T.hg38 C3L-04872 LSCC miRNA-Seq tumor CPT0268190009 7e501903-e1f7-4199-be84-95edea9c5a57_mirnaseq_gdc_realn.bam 237597097 BAM harmonized CPTAC3 977e92f0-0ee0-4272-b2a7-b306862a4129 7b361a2438dd52e8b2fab45a192b9da2 {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor"} -C3L-04872.RNA-Seq.chimeric.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.chimeric.gdc_realn.bam 80940088 BAM chimeric harmonized CPTAC3 94138104-2844-47bb-8d5c-ee6118a9f7ef 1b4f1dc602101c063b64bf81956a9748 {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.RNA-Seq.chimeric.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.chimeric.gdc_realn.bam 56909093 BAM chimeric harmonized CPTAC3 8c552d1f-e02c-4047-bde4-ceeec8c68454 4232be6f1d93870e81d191e261f7106e {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor"} -C3L-04872.RNA-Seq.genomic.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.genomic.gdc_realn.bam 8800210561 BAM genomic harmonized CPTAC3 90a57f05-3d23-4987-9cbb-72c601b985dc 5ce3e5ad211c17a7dc94ce451713c610 {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.RNA-Seq.genomic.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.genomic.gdc_realn.bam 7841615343 BAM genomic harmonized CPTAC3 cd7d2532-d65d-4d44-b66f-4392914bf905 a3a3af734721b8157b6cc5df7794e753 {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor"} -C3L-04872.RNA-Seq.S17_L005_R1.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R1_001.fastq.gz 4349949102 FASTQ S17_L005_R1 unaligned CPTAC3 8655c5ea-5ef9-42e0-bee0-9731723f1c28 b17897a7868704dabfb9af33c1d6dd2c {"aliquot_tag": "ALQ_2258fc4", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.RNA-Seq.S17_L005_R2.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R2_001.fastq.gz 4947695883 FASTQ S17_L005_R2 unaligned CPTAC3 a28cea4c-f0f3-407c-a8ed-34f29aae8a99 4126da6ba4133a155b16f5a857e8f280 {"aliquot_tag": "ALQ_2258fc4", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.RNA-Seq.S29_L008_R1.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R1_001.fastq.gz 3698420557 FASTQ S29_L008_R1 unaligned CPTAC3 94f914c3-18e6-41d0-b4d8-35d7e99cddc9 8c15acd560b7c9773ebb3c8dcc9b1e4c {"aliquot_tag": "ALQ_7c2139db", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04872.RNA-Seq.S29_L008_R2.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R2_001.fastq.gz 4217739880 FASTQ S29_L008_R2 unaligned CPTAC3 aca625af-fd49-4223-a531-7018beea2e58 606325e5950b21613123e0a2ca2abd97 {"aliquot_tag": "ALQ_7c2139db", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04872.RNA-Seq.transcriptome.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.transcriptome.gdc_realn.bam 11527771470 BAM transcriptome harmonized CPTAC3 ede1ef2a-c88b-469d-b061-5aaef5b04fc8 f4d0c6773fa6e4fb562f9158f104cf75 {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.RNA-Seq.transcriptome.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.transcriptome.gdc_realn.bam 8292623566 BAM transcriptome harmonized CPTAC3 6548a174-c5a2-4860-91d0-45c804a6dc2e 65b509073a8e8d57957ad04dba4e6aa9 {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor"} -C3L-04872.WGS.N C3L-04872 LSCC WGS blood_normal CPT0268330002 CPT0268330002.WholeGenome.RP-2158.bam 34651736800 BAM aligned CPTAC3 f73aff23-b6ee-462f-8f55-b95235fff974 50bb5a25030e3df47ef397d70caefbe5 {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04872.WGS.N.hg38 C3L-04872 LSCC WGS blood_normal CPT0268330002 684ec18f-3d8f-4bfd-88d9-264ebaf87fa4_wgs_gdc_realn.bam 105158711822 BAM harmonized CPTAC3 1833b881-3ebe-46be-adfe-bffa4185cddf 10625140854449396bab971776ade5e0 {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04872.WGS.T C3L-04872 LSCC WGS tumor CPT0268190006 CPT0268190006.WholeGenome.RP-2158.bam 24981323028 BAM aligned CPTAC3 4dbf0932-423f-4b0e-ad6a-0e7885f1e507 d4a679671e2a5526eb3688094fc9403f {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor"} -C3L-04872.WGS.T.hg38 C3L-04872 LSCC WGS tumor CPT0268190006 36c2492a-a296-4bff-9e6e-3e00aae2dc2b_wgs_gdc_realn.bam 76238037119 BAM harmonized CPTAC3 3e40b43b-5757-40d7-a5a2-02210f457a40 9c5f9b80eaf35b8362ae473ff7cba289 {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor"} -C3L-04872.WXS.A C3L-04872 LSCC WXS tissue_normal CPT0268240006 CPT0268240006.WholeExome.RP-1303.bam 39055575442 BAM aligned CPTAC3 1724591c-1dc7-4ebf-b7ce-12776f707fd1 c02781f978978717126752faf14a473a {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.WXS.A.hg38 C3L-04872 LSCC WXS tissue_normal CPT0268240006 6cf4be9b-1627-4610-8617-3c350647e1f5_wxs_gdc_realn.bam 53034742276 BAM harmonized CPTAC3 103d3259-8da9-4a15-9b63-e2cf1a7f0669 c083e08e8439f8944fda9b97612a7924 {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04872.WXS.N C3L-04872 LSCC WXS blood_normal CPT0268330002 CPT0268330002.WholeExome.RP-1303.bam 23255592628 BAM aligned CPTAC3 86fd29e2-d1be-4666-ab6a-4b73b590920b b4687deb492100cd984565593562ebcd {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04872.WXS.N.hg38 C3L-04872 LSCC WXS blood_normal CPT0268330002 684ec18f-3d8f-4bfd-88d9-264ebaf87fa4_wxs_gdc_realn.bam 31565336996 BAM harmonized CPTAC3 4c23007d-2c01-4fac-9a0c-3fe23f4a8d1b 45eb430a272992490fb5a61b3aea7a07 {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal"} -C3L-04872.WXS.T C3L-04872 LSCC WXS tumor CPT0268190006 CPT0268190006.WholeExome.RP-1303.bam 18196315726 BAM aligned CPTAC3 9862a218-91e0-4548-bbd2-744ac818d59a 6b1ea64fb5bada653fa6b23c638220ab {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor"} -C3L-04872.WXS.T.hg38 C3L-04872 LSCC WXS tumor CPT0268190006 36c2492a-a296-4bff-9e6e-3e00aae2dc2b_wxs_gdc_realn.bam 26936928324 BAM harmonized CPTAC3 cf37bf4f-2eec-48dc-8155-35444e372552 0fe23fff10071e5b6e9e02e41da763bf {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor"} -C3L-04873.MethArray.Green.A C3L-04873 LSCC Methylation_Array tissue_normal CPT0267860006 204372030164_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 cbd5359b-759e-4c2f-be90-1169ddd10daa 403b6cd4c8615832ed25f867545e535a {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.MethArray.Green.T C3L-04873 LSCC Methylation_Array tumor CPT0267850006 204372030085_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 c41bb0d7-3b23-45b3-beaa-ed6f59b4a8ed 8637208cfaa59b5565cc51400829c0ee {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor"} -C3L-04873.MethArray.Red.A C3L-04873 LSCC Methylation_Array tissue_normal CPT0267860006 204372030164_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 b3cae102-a807-4535-91ed-d0d6666f8582 4fac9e0552c37f75b0c55d12de800a69 {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.MethArray.Red.T C3L-04873 LSCC Methylation_Array tumor CPT0267850006 204372030085_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 7bceb29c-ce0e-4a25-9471-a9b112629755 66e91793143b81fec70c10e690d0be5f {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor"} -C3L-04873.miRNA-Seq.A.hg38 C3L-04873 LSCC miRNA-Seq tissue_normal CPT0267860009 817185b0-cd61-48f5-ba54-f3717fa884ba_mirnaseq_gdc_realn.bam 243528811 BAM harmonized CPTAC3 da53d6bc-3f59-4518-8a4b-177b0a29823c 5c75b6789e87a2be0c8b0ccf89686c59 {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.miRNA-Seq.S14_L006_R1.T C3L-04873 LSCC miRNA-Seq tumor CPT0267850009 200224_UNC31-K00269_0267_AHC722BBXY_AGTTCC_S14_L006_R1_001.unaln.bam 199360917 BAM S14_L006_R1 unaligned CPTAC3 e31a13b4-02da-42cd-880b-f4149178dc5d c481f65fae8904d031e6b531c9794824 {"aliquot_tag": "ALQ_6896f5fb", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04873.miRNA-Seq.S6_L007_R1.A C3L-04873 LSCC miRNA-Seq tissue_normal CPT0267860009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATGTCA_S6_L007_R1_001.unaln.bam 215073873 BAM S6_L007_R1 unaligned CPTAC3 ccc64fd0-9119-4e84-b0b7-badc0fcc2091 839ec656db3796eda3e83373fde871f4 {"aliquot_tag": "ALQ_2f368f2b", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.miRNA-Seq.T.hg38 C3L-04873 LSCC miRNA-Seq tumor CPT0267850009 7a2c99b9-233b-4830-bdcd-657f3688c4d5_mirnaseq_gdc_realn.bam 224099379 BAM harmonized CPTAC3 3317d158-0494-455b-a093-71a591886ad3 16679dec31515c207e57a5e458ac198a {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor"} -C3L-04873.RNA-Seq.chimeric.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.chimeric.gdc_realn.bam 69985959 BAM chimeric harmonized CPTAC3 8ee47747-315c-4935-8326-88a620f0cf92 29c562d33429ba2f10f1645feb9b2df4 {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.RNA-Seq.chimeric.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.chimeric.gdc_realn.bam 72449084 BAM chimeric harmonized CPTAC3 1efd2c17-3a91-4984-9095-bdf0a3d642cb 5331e2adec7f8b5a9aac3b1abfb2abb1 {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor"} -C3L-04873.RNA-Seq.genomic.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.genomic.gdc_realn.bam 6770811622 BAM genomic harmonized CPTAC3 05636841-9d01-49e4-9092-7e199296571b 0129aa987d514ed511fb7e3cc08afc8e {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.RNA-Seq.genomic.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.genomic.gdc_realn.bam 8452007508 BAM genomic harmonized CPTAC3 3f342088-ae3a-4e5e-909a-412bba21bbab ab489d368fa80001431d33644cbf77b0 {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor"} -C3L-04873.RNA-Seq.S16_L004_R1.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R1_001.fastq.gz 3267021647 FASTQ S16_L004_R1 unaligned CPTAC3 4f261355-af5a-4fc3-845b-deee97490d06 9c998163d8b3500a9a30e9deba5f9970 {"aliquot_tag": "ALQ_2f368f2b", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.RNA-Seq.S16_L004_R2.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R2_001.fastq.gz 3661427471 FASTQ S16_L004_R2 unaligned CPTAC3 5bfe4050-1028-4139-9fa0-0de52e10513f 8e290353c7c553f20a3c4d1dc99d73cb {"aliquot_tag": "ALQ_2f368f2b", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.RNA-Seq.S30_L008_R1.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R1_001.fastq.gz 4118044352 FASTQ S30_L008_R1 unaligned CPTAC3 20817190-6ba3-46e2-97b8-3524fb0f249d c62e59b11ec933fbab678c77f6fc7f3f {"aliquot_tag": "ALQ_6896f5fb", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04873.RNA-Seq.S30_L008_R2.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R2_001.fastq.gz 4391222005 FASTQ S30_L008_R2 unaligned CPTAC3 a0f52148-128b-417a-bc26-eaff29f1ba80 c83c95266db04107e4e5eddf3da6bb96 {"aliquot_tag": "ALQ_6896f5fb", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04873.RNA-Seq.transcriptome.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.transcriptome.gdc_realn.bam 8142750344 BAM transcriptome harmonized CPTAC3 e408e527-6786-4eb0-9224-8ddec6dcc1d3 f8396a9c3a451ed751aa810be37948cb {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.RNA-Seq.transcriptome.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.transcriptome.gdc_realn.bam 11069788448 BAM transcriptome harmonized CPTAC3 f6598c3b-c998-416f-ae22-b40c7ce88212 ddbe7d45d212129336e2e49318dbab5a {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor"} -C3L-04873.WGS.N C3L-04873 LSCC WGS blood_normal CPT0267970002 CPT0267970002.WholeGenome.RP-2158.bam 27770798027 BAM aligned CPTAC3 6e9b251f-aac4-4ca8-8aa2-94939f3944c9 398f0810d4e79f56d90037d662c34fb3 {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04873.WGS.N.hg38 C3L-04873 LSCC WGS blood_normal CPT0267970002 82f03f91-8421-4e4c-a257-2bde3ae9ec4a_wgs_gdc_realn.bam 83761394148 BAM harmonized CPTAC3 273c5dee-0424-4279-9eb2-fdd9b5b6d9ec 92b40d5aba4838c72b3d53d81b53c809 {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04873.WGS.T C3L-04873 LSCC WGS tumor CPT0267850006 CPT0267850006.WholeGenome.RP-2158.bam 23683876538 BAM aligned CPTAC3 2493af4b-02d6-401b-b65d-0e62639e0232 0f2f1db9acfa8bf04af271e65da06234 {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor"} -C3L-04873.WGS.T.hg38 C3L-04873 LSCC WGS tumor CPT0267850006 04f1ed3d-fb02-4257-ac35-bb8607019cce_wgs_gdc_realn.bam 70441640431 BAM harmonized CPTAC3 aff9f748-72c3-45fe-b67b-aac0fdcb92e4 8506b3a0ce05d0cedc1580d27f78577a {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor"} -C3L-04873.WXS.A C3L-04873 LSCC WXS tissue_normal CPT0267860006 CPT0267860006.WholeExome.RP-1303.bam 22379338179 BAM aligned CPTAC3 d8b3c54e-dd10-46a7-a4ee-b0e6f0a938c4 2180424896ab482d40d884950ac2f034 {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.WXS.A.hg38 C3L-04873 LSCC WXS tissue_normal CPT0267860006 fb8b317e-44e7-429b-9b48-a0d4852e9f08_wxs_gdc_realn.bam 31658760442 BAM harmonized CPTAC3 e729f7dc-a27d-4b2c-b9e8-75fae08789cc 6495482d91e832e5c8b9d36833fc2384 {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04873.WXS.N C3L-04873 LSCC WXS blood_normal CPT0267970002 CPT0267970002.WholeExome.RP-1303.bam 18720837432 BAM aligned CPTAC3 facf7952-5290-4a3f-bb0c-fc860c54b8ab beeeb76c35b6ed4a83715802280933b8 {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04873.WXS.N.hg38 C3L-04873 LSCC WXS blood_normal CPT0267970002 82f03f91-8421-4e4c-a257-2bde3ae9ec4a_wxs_gdc_realn.bam 25285412565 BAM harmonized CPTAC3 fddf9a49-09c9-42c5-b6e1-f14d128e7749 48cca18f529723debd970094afe5b3cf {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal"} -C3L-04873.WXS.T C3L-04873 LSCC WXS tumor CPT0267850006 CPT0267850006.WholeExome.RP-1303.bam 23833247155 BAM aligned CPTAC3 d0b36001-fc8e-45bd-9d06-95da96158263 7d48afbf8d5e276613d9624140345e6c {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor"} -C3L-04873.WXS.T.hg38 C3L-04873 LSCC WXS tumor CPT0267850006 04f1ed3d-fb02-4257-ac35-bb8607019cce_wxs_gdc_realn.bam 32992811950 BAM harmonized CPTAC3 a78ce0ca-4c2a-46d1-96e1-2b4d2a1b7097 161062697a3425e6515c0ef0643c920b {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor"} -C3L-04874.MethArray.Green.A C3L-04874 LSCC Methylation_Array tissue_normal CPT0268060006 204367470124_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 3994e0ff-a8c7-4b6e-a1e4-69a81d2d9ca3 660ba2d08bcc5b918b430162877ffec5 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.MethArray.Green.T C3L-04874 LSCC Methylation_Array tumor CPT0268010006 204367460011_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 66f6f748-70d9-4830-ad0d-272294c2730b c1fbde6ffb6db48fb1206ff77e465240 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor"} -C3L-04874.MethArray.Red.A C3L-04874 LSCC Methylation_Array tissue_normal CPT0268060006 204367470124_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 ada4d209-2f1b-450d-aea0-e2d855df5c19 50cf7484e5411bb98294f76126b18828 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.MethArray.Red.T C3L-04874 LSCC Methylation_Array tumor CPT0268010006 204367460011_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 97f0fb00-8344-45bb-bead-69f4b60dc1f7 cdea31e0e857079d40218bd68b429068 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor"} -C3L-04874.miRNA-Seq.A.hg38 C3L-04874 LSCC miRNA-Seq tissue_normal CPT0268060009 f4176045-f3a0-411d-b198-72175e63b5ba_mirnaseq_gdc_realn.bam 228145568 BAM harmonized CPTAC3 9b2c4a53-a17e-40cd-8c8f-750e5bd944ea 558ad09dc1760b20b187aed69511551e {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.miRNA-Seq.S15_L006_R1.T C3L-04874 LSCC miRNA-Seq tumor CPT0268010009 200224_UNC31-K00269_0267_AHC722BBXY_ATGTCA_S15_L006_R1_001.unaln.bam 257877724 BAM S15_L006_R1 unaligned CPTAC3 a18a1b5d-245e-469d-951e-65f7c1bca04d ec123fc307a7869a3e6790518e955033 {"aliquot_tag": "ALQ_870da1bf", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04874.miRNA-Seq.S8_L007_R1.A C3L-04874 LSCC miRNA-Seq tissue_normal CPT0268060009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCGTCC_S8_L007_R1_001.unaln.bam 203423638 BAM S8_L007_R1 unaligned CPTAC3 8c9ce3a9-d399-4b3a-a415-e3e5b7c4a5d8 de078394ed671d57edbd7118a533811b {"aliquot_tag": "ALQ_352d7daf", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.miRNA-Seq.T.hg38 C3L-04874 LSCC miRNA-Seq tumor CPT0268010009 9de2d273-d6e7-47a0-a628-eb6bc9b3a2e0_mirnaseq_gdc_realn.bam 280343130 BAM harmonized CPTAC3 b978c3f3-4377-4420-ae18-cbb221ae8502 8142724d71d80f152e7e49b22899e4ac {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor"} -C3L-04874.RNA-Seq.chimeric.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.chimeric.gdc_realn.bam 59204199 BAM chimeric harmonized CPTAC3 f102d8a0-ba49-481c-af5a-231cf417aceb 902f88931d452e80b014b5701e2cc588 {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.RNA-Seq.chimeric.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.chimeric.gdc_realn.bam 72850474 BAM chimeric harmonized CPTAC3 0412ebac-894b-4952-b590-405ed8c3b6b5 c313932d452982a77274f399dd227b3c {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor"} -C3L-04874.RNA-Seq.genomic.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.genomic.gdc_realn.bam 9207473800 BAM genomic harmonized CPTAC3 d1765eea-b0d0-438a-92fb-0916ed616a4c 0c8cb26f34935ada85de6d1ff89d3a0e {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.RNA-Seq.genomic.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.genomic.gdc_realn.bam 7601625125 BAM genomic harmonized CPTAC3 6cc1f844-1abb-4bd1-b112-95d0c39a5b80 940d05920c94a4a8ee70c375f5017ec3 {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor"} -C3L-04874.RNA-Seq.S13_L004_R1.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R1_001.fastq.gz 4590335158 FASTQ S13_L004_R1 unaligned CPTAC3 7742eec6-bdb8-4f41-8397-ef82eadf8e7f 1654e5b234ed531a733e6a75e8653c6e {"aliquot_tag": "ALQ_352d7daf", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.RNA-Seq.S13_L004_R2.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R2_001.fastq.gz 5111805431 FASTQ S13_L004_R2 unaligned CPTAC3 3747b899-498f-45a5-8c6f-684299021505 c64c58b363303c763a4ca4b4fe9d6bb4 {"aliquot_tag": "ALQ_352d7daf", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.RNA-Seq.S31_L008_R1.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R1_001.fastq.gz 3696908014 FASTQ S31_L008_R1 unaligned CPTAC3 88ca160f-a81f-4bef-9f80-13517f1e6b75 a8ce459b2c7aae68d8f87dc84ded8293 {"aliquot_tag": "ALQ_870da1bf", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04874.RNA-Seq.S31_L008_R2.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R2_001.fastq.gz 4002016917 FASTQ S31_L008_R2 unaligned CPTAC3 1b6e6435-3038-41a9-9faf-683d6e37dbfe c2badd236e84c6b15149af5ae0387a05 {"aliquot_tag": "ALQ_870da1bf", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04874.RNA-Seq.transcriptome.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.transcriptome.gdc_realn.bam 11903306791 BAM transcriptome harmonized CPTAC3 477a74c8-1e82-4bc4-8f59-8493a776423f d579bd7cf132d63dc2784546f3b771b0 {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.RNA-Seq.transcriptome.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.transcriptome.gdc_realn.bam 9799554602 BAM transcriptome harmonized CPTAC3 654576c8-2da6-48bd-be77-a3b69be5278d cf4eb806172172f738b7a0d4a03f21ac {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor"} -C3L-04874.WGS.N C3L-04874 LSCC WGS blood_normal CPT0268150002 CPT0268150002.WholeGenome.RP-2158.bam 26957184911 BAM aligned CPTAC3 ef812784-db07-40be-b8fa-0b8ff7d1dba9 b5a486deef8bfb32d1b10bab88a153b1 {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal"} -C3L-04874.WGS.N.hg38 C3L-04874 LSCC WGS blood_normal CPT0268150002 953cc737-9263-4e67-be03-67fe6d20bb08_wgs_gdc_realn.bam 83536921005 BAM harmonized CPTAC3 a3c24b09-97d6-4f8e-a53a-08976f7312a7 c773fa2917d68b7f602b34a05be6503a {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal"} -C3L-04874.WGS.T C3L-04874 LSCC WGS tumor CPT0268010006 CPT0268010006.WholeGenome.RP-2158.bam 26810039619 BAM aligned CPTAC3 cf1029b8-5e50-4b2d-98d9-33ff5d24745d 0632651113768137e8dac034e96b2300 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor"} -C3L-04874.WGS.T.hg38 C3L-04874 LSCC WGS tumor CPT0268010006 4d122972-e702-4224-9825-9d97013cac46_wgs_gdc_realn.bam 79090522046 BAM harmonized CPTAC3 09d88d3e-7e17-4371-b1f6-0f9627d89f4f 63a75d52421341a8027aacc5384d8e2e {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor"} -C3L-04874.WXS.A C3L-04874 LSCC WXS tissue_normal CPT0268060006 CPT0268060006.WholeExome.RP-1303.bam 25247341808 BAM aligned CPTAC3 064ebb6e-ab76-4a63-ab75-2dcab1676a33 b7989ba8441b6c5275020ef3ce6a9873 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.WXS.A.hg38 C3L-04874 LSCC WXS tissue_normal CPT0268060006 b31502a1-6c1c-4b3a-baa7-cefb398d1a27_wxs_gdc_realn.bam 34319914160 BAM harmonized CPTAC3 8b80a4ba-c29e-46e5-97ca-463908920510 b2dfb8820a1401abd94253ddeda070b0 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04874.WXS.N C3L-04874 LSCC WXS blood_normal CPT0268150002 CPT0268150002.WholeExome.RP-1303.bam 29016340716 BAM aligned CPTAC3 15c5c425-5dfc-4dbb-8afd-cfd33714274b fa26574e25c787f0ee162b897a1c0840 {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal"} -C3L-04874.WXS.N.hg38 C3L-04874 LSCC WXS blood_normal CPT0268150002 953cc737-9263-4e67-be03-67fe6d20bb08_wxs_gdc_realn.bam 40216174443 BAM harmonized CPTAC3 5eba3e46-a59f-478f-91e8-c400a5830e57 afae7927e53ac26ab77a1bcbdff2753e {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal"} -C3L-04874.WXS.T C3L-04874 LSCC WXS tumor CPT0268010006 CPT0268010006.WholeExome.RP-1303.bam 22456291052 BAM aligned CPTAC3 5825af56-076b-4c97-a001-1d7c72f38a0d fb8339ac8e0e95f48764be3ba1b713aa {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor"} -C3L-04874.WXS.T.hg38 C3L-04874 LSCC WXS tumor CPT0268010006 4d122972-e702-4224-9825-9d97013cac46_wxs_gdc_realn.bam 30691005000 BAM harmonized CPTAC3 1dc9f1bc-7640-4843-89d2-b328c6ded443 94325e7c42e570216fac630e476b60e1 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor"} -C3L-04878.MethArray.Green.A C3L-04878 LSCC Methylation_Array tissue_normal CPT0255260006 204367460011_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ee099556-091f-4a33-85eb-b75137f3251b 411d048d377a7b3d653f724b62f76bf7 {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.MethArray.Green.T C3L-04878 LSCC Methylation_Array tumor CPT0255240006 204367490057_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 a3edd16a-62ad-4f2e-860b-c1acec059fd1 46ef716ea5bc08a8fbe802052d5d1e8f {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor"} -C3L-04878.MethArray.Red.A C3L-04878 LSCC Methylation_Array tissue_normal CPT0255260006 204367460011_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 c0a8ab19-6dbf-4b37-ae52-bd8625e50a4f 1a56388ee8cbac99cfcb2046fe77e4ae {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.MethArray.Red.T C3L-04878 LSCC Methylation_Array tumor CPT0255240006 204367490057_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 ec74d8db-dc59-4593-85c3-677473ee06d8 624b794928c5747742c47ad8acc2b98c {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor"} -C3L-04878.miRNA-Seq.A.hg38 C3L-04878 LSCC miRNA-Seq tissue_normal CPT0255260009 f47c07e7-6d7e-4c19-90c8-802b2d92c1c8_mirnaseq_gdc_realn.bam 279595817 BAM harmonized CPTAC3 f861d1d9-e571-4661-83f3-37ff53d7c8c5 49ab6ea70304ae84e2c377574c1133b8 {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.miRNA-Seq.S16_L007_R1.T C3L-04878 LSCC miRNA-Seq tumor CPT0255240009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGTAGC_S16_L007_R1_001.unaln.bam 203902828 BAM S16_L007_R1 unaligned CPTAC3 3d90aa3c-b946-4a81-84cd-224d597c8d43 c35f4a41e708c9e80cb1ecb503bd55c2 {"aliquot_tag": "ALQ_ed7de9e7", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04878.miRNA-Seq.S1_L007_R1.A C3L-04878 LSCC miRNA-Seq tissue_normal CPT0255260009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACAGTG_S1_L007_R1_001.unaln.bam 252119796 BAM S1_L007_R1 unaligned CPTAC3 d209d425-5683-4d28-9da6-234da87b4398 0995ee9d0ecdd03b5dd8180597721bcc {"aliquot_tag": "ALQ_97bdba87", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.miRNA-Seq.T.hg38 C3L-04878 LSCC miRNA-Seq tumor CPT0255240009 c9ec5f61-33a1-409a-b74b-3024265552bd_mirnaseq_gdc_realn.bam 228598500 BAM harmonized CPTAC3 e4ead1f4-50b1-4426-930b-774bb96ca2ec cd5e522c1911411cc06dfd5ab06da2f3 {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04878.RNA-Seq.chimeric.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.chimeric.gdc_realn.bam 89556924 BAM chimeric harmonized CPTAC3 66148929-f0e1-431c-8c49-3e559429204e e4e3d3483acb03be1df5bcb7d54d3bd6 {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.RNA-Seq.chimeric.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.chimeric.gdc_realn.bam 93993238 BAM chimeric harmonized CPTAC3 f9e8d6fa-2dc1-4dfe-a272-e8ed039960cf 9767b55f69024a8c087012cbf7b03eb2 {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04878.RNA-Seq.genomic.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.genomic.gdc_realn.bam 7558333864 BAM genomic harmonized CPTAC3 09ea9be4-2907-41fd-9bcf-4e87b81c4cbb c043b5ce98192da76d8a373e1e6fdfa5 {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.RNA-Seq.genomic.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.genomic.gdc_realn.bam 9708242052 BAM genomic harmonized CPTAC3 344f6bf5-1de5-4960-b61d-f5276a6a7b4f b3a2b954909903457bd5e6c19d985edd {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04878.RNA-Seq.S24_L006_R1.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R1_001.fastq.gz 4588674714 FASTQ S24_L006_R1 unaligned CPTAC3 d499e349-70b5-4acb-a097-643e4ceef9c3 d328f1dcc1b51e55b33d31e82ab83dc2 {"aliquot_tag": "ALQ_ed7de9e7", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04878.RNA-Seq.S24_L006_R2.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R2_001.fastq.gz 5160688434 FASTQ S24_L006_R2 unaligned CPTAC3 61bdea9c-2adf-472d-8f95-85800d2e2ec4 44313257b91cb26a022002e4d1453d73 {"aliquot_tag": "ALQ_ed7de9e7", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04878.RNA-Seq.S6_L002_R1.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 3590768876 FASTQ S6_L002_R1 unaligned CPTAC3 0eae0b0a-3b86-409a-a7b4-0287abc1e9f0 5865033e8eb0918dc066a6020481d32a {"aliquot_tag": "ALQ_97bdba87", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.RNA-Seq.S6_L002_R2.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4028352591 FASTQ S6_L002_R2 unaligned CPTAC3 eef84db7-0743-4761-be20-4fa8736b4034 4ab20dcf74f24d8a7e02f4341667fbc2 {"aliquot_tag": "ALQ_97bdba87", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.RNA-Seq.transcriptome.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.transcriptome.gdc_realn.bam 8519887327 BAM transcriptome harmonized CPTAC3 9f61a929-0f79-4add-bfbb-f13371629618 cbe70f800954e394dede22789f03a17c {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.RNA-Seq.transcriptome.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.transcriptome.gdc_realn.bam 11024340555 BAM transcriptome harmonized CPTAC3 e69b6b86-7d77-404a-868e-2ef80d723623 355fe56e78a13c3dedd21843359b42d3 {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor"} -C3L-04878.WGS.N C3L-04878 LSCC WGS blood_normal CPT0255360002 CPT0255360002.WholeGenome.RP-2158.bam 24848420863 BAM aligned CPTAC3 7eb956f8-37a4-4f14-bf28-18d99110c807 ed4ad8bc347fe252985ebb6bad4c7dc3 {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal"} -C3L-04878.WGS.N.hg38 C3L-04878 LSCC WGS blood_normal CPT0255360002 9a24adbe-9814-4111-ad5c-be83ee688559_wgs_gdc_realn.bam 73320254134 BAM harmonized CPTAC3 5d3c329c-f915-45fd-9d44-ab657947b05a b7f7e9a7266fc05f8bca0beed9c0715b {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal"} -C3L-04878.WGS.T C3L-04878 LSCC WGS tumor CPT0255240006 CPT0255240006.WholeGenome.RP-2158.bam 46451037455 BAM aligned CPTAC3 a70cacfa-0661-40d9-a4fd-0d912c3355bd aa566aa80c683791e5de7984d2fa3284 {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor"} -C3L-04878.WGS.T.hg38 C3L-04878 LSCC WGS tumor CPT0255240006 6ece0a12-2fd2-48ca-bbce-14090dded31d_wgs_gdc_realn.bam 132044860943 BAM harmonized CPTAC3 8adc8708-db6d-4478-8f6c-220011c1e560 389f9a9d47175f2c0cde53fa9f96e2e7 {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor"} -C3L-04878.WXS.A C3L-04878 LSCC WXS tissue_normal CPT0255260006 CPT0255260006.WholeExome.RP-1303.bam 38551556852 BAM aligned CPTAC3 9b802bb9-2675-483e-9ae8-80dd25226307 0572a907a29f347edc184c02bc44ac76 {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.WXS.A.hg38 C3L-04878 LSCC WXS tissue_normal CPT0255260006 08ad4ab9-856d-40a3-88e2-dc8bcdbe2c37_wxs_gdc_realn.bam 53592713740 BAM harmonized CPTAC3 1fbc7c7f-3a52-4c38-9f93-47694cb108e7 e87ff66fe3f65d8a86ef3f040f8254a9 {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04878.WXS.N C3L-04878 LSCC WXS blood_normal CPT0255360002 CPT0255360002.WholeExome.RP-1303.bam 21395236546 BAM aligned CPTAC3 b6ecc3b9-ba2f-40ac-b8de-bbeed107db36 96cfa1b561ebbacd594f18b5914a85c6 {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal"} -C3L-04878.WXS.N.hg38 C3L-04878 LSCC WXS blood_normal CPT0255360002 9a24adbe-9814-4111-ad5c-be83ee688559_wxs_gdc_realn.bam 29123621907 BAM harmonized CPTAC3 0ae4fe96-3abb-484e-a9d0-9204dec287c1 f6ff18592c1b5caeea6781b55c86c059 {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal"} -C3L-04878.WXS.T C3L-04878 LSCC WXS tumor CPT0255240006 CPT0255240006.WholeExome.RP-1303.bam 42223872489 BAM aligned CPTAC3 230f486f-d728-4079-bf4b-7d371a8dd486 88ebec1bb61cc63ce419daccee95f444 {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor"} -C3L-04878.WXS.T.hg38 C3L-04878 LSCC WXS tumor CPT0255240006 6ece0a12-2fd2-48ca-bbce-14090dded31d_wxs_gdc_realn.bam 58806856272 BAM harmonized CPTAC3 62578ff2-f391-4a8d-b3df-5d0703b6119f 5e756dd07b533405f209911a8e0f25ba {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor"} -C3L-04880.MethArray.Green.A C3L-04880 LSCC Methylation_Array tissue_normal CPT0253480006 204372030079_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4b951416-a09e-4177-830a-b682ac806b8d 1c3ddf40e940c246f691ac9342ccb498 {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.MethArray.Green.T C3L-04880 LSCC Methylation_Array tumor CPT0253470006 204367470157_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1337f910-2459-44d9-a9c4-ac40fe7fbfff 3f57c5ad29bd34ccd21d6ba5e0f46c5d {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor"} -C3L-04880.MethArray.Red.A C3L-04880 LSCC Methylation_Array tissue_normal CPT0253480006 204372030079_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 7b1c87a8-bbbc-439a-87b8-d39cb61e7975 581486f56e46abb062b646274827c0da {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.MethArray.Red.T C3L-04880 LSCC Methylation_Array tumor CPT0253470006 204367470157_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 0361a1ad-8a0c-4653-84bb-6d01e89adaa1 778a64804fdd27609b6ec2e465049d00 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor"} -C3L-04880.miRNA-Seq.A.hg38 C3L-04880 LSCC miRNA-Seq tissue_normal CPT0253480009 7e014f14-93d9-4274-9d22-5c402e23bd92_mirnaseq_gdc_realn.bam 268251774 BAM harmonized CPTAC3 3947aa35-001f-402c-8554-d29453f93667 daaa854a9aa7949eb853450b286d88b2 {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.miRNA-Seq.S29_L007_R1.T C3L-04880 LSCC miRNA-Seq tumor CPT0253470009 200224_UNC31-K00269_0267_AHC722BBXY_CAACTA_S29_L007_R1_001.unaln.bam 256466083 BAM S29_L007_R1 unaligned CPTAC3 5dcbcb08-9dec-46ef-a3b6-77094bfc3572 34f2e98831cd827bd67cf28286e342c0 {"aliquot_tag": "ALQ_1f544510", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04880.miRNA-Seq.S47_L006_R1.A C3L-04880 LSCC miRNA-Seq tissue_normal CPT0253480009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCGAAG_S47_L006_R1_001.unaln.bam 240633738 BAM S47_L006_R1 unaligned CPTAC3 4bff370d-3f48-4070-9d96-e41d5d26f60e 63c14752b83ea58c162a319a847c0ec5 {"aliquot_tag": "ALQ_9d04d2c1", "sample": "S47", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.miRNA-Seq.T.hg38 C3L-04880 LSCC miRNA-Seq tumor CPT0253470009 df476473-7d60-4a83-8152-8fac3d7c5330_mirnaseq_gdc_realn.bam 281482737 BAM harmonized CPTAC3 4ff45129-c852-48df-a2c5-aeb976e29ede 052c71bb5dd237c89fe77be53f0d8d18 {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor"} -C3L-04880.RNA-Seq.chimeric.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.chimeric.gdc_realn.bam 37015012 BAM chimeric harmonized CPTAC3 2b5b0aca-4c9f-4ff2-97b8-e40b31e45b74 3678694b57e7e39bddb1ea39b3d3653a {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.RNA-Seq.chimeric.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.chimeric.gdc_realn.bam 27600675 BAM chimeric harmonized CPTAC3 a1342a2c-e72e-40c4-b150-21d51740ba56 bd9c9575b0b73c968ad8557f5ef9ddb1 {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor"} -C3L-04880.RNA-Seq.genomic.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.genomic.gdc_realn.bam 9956156919 BAM genomic harmonized CPTAC3 e45da645-dcf2-47f0-8120-01c5c003991f 318ff976f91bab9477cab3363384f23d {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.RNA-Seq.genomic.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.genomic.gdc_realn.bam 7019605586 BAM genomic harmonized CPTAC3 a104cf86-1e1c-4168-8fc6-299953497860 d8a4ed4687845d7d111aaaee3e1711ae {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor"} -C3L-04880.RNA-Seq.S13_L004_R1.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3271028811 FASTQ S13_L004_R1 unaligned CPTAC3 3e430357-3552-49c5-a783-44fe28641208 53f04777700eb070116756da3515d8ff {"aliquot_tag": "ALQ_1f544510", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04880.RNA-Seq.S13_L004_R2.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 3513897709 FASTQ S13_L004_R2 unaligned CPTAC3 607a4186-d2e9-4176-8d0b-4aaaa6d49250 65bec1d735321a8efb0d2a24653da454 {"aliquot_tag": "ALQ_1f544510", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04880.RNA-Seq.S32_L008_R1.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R1_001.fastq.gz 4395587682 FASTQ S32_L008_R1 unaligned CPTAC3 1d0e3440-e377-4cf2-b1e1-69b467e581c9 abbbfc30f4efa7cf01c3bcc7eefcc94c {"aliquot_tag": "ALQ_9d04d2c1", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.RNA-Seq.S32_L008_R2.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R2_001.fastq.gz 5473367389 FASTQ S32_L008_R2 unaligned CPTAC3 a6622f25-84c9-48e2-bca1-73b5d176648d 7e4cd746a2a61c4d5ddd096c5083b058 {"aliquot_tag": "ALQ_9d04d2c1", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.RNA-Seq.transcriptome.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.transcriptome.gdc_realn.bam 11617070139 BAM transcriptome harmonized CPTAC3 9d22fba6-0241-485e-9024-56ca3622145b 9c45e49033e324a993a3facbfdc5bd2f {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.RNA-Seq.transcriptome.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.transcriptome.gdc_realn.bam 8929528890 BAM transcriptome harmonized CPTAC3 826176a2-ca88-44a0-a803-5cde5b99fd22 432448c09f71e624daef235890f9b65b {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor"} -C3L-04880.WGS.N C3L-04880 LSCC WGS blood_normal CPT0253590002 CPT0253590002.WholeGenome.RP-2158.bam 26459494415 BAM aligned CPTAC3 5da2c091-2d7e-4972-8cc7-c5eab0d39737 a84406b1c4fd86bb0be48311e6a7b972 {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04880.WGS.N.hg38 C3L-04880 LSCC WGS blood_normal CPT0253590002 aedbe9f5-5a65-4d32-9583-36c12c019c25_wgs_gdc_realn.bam 77856755373 BAM harmonized CPTAC3 4b24c115-f177-402c-9301-cd422a5aad9a 531d295b1f5e8b661193257fa9810047 {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04880.WGS.T C3L-04880 LSCC WGS tumor CPT0253470006 CPT0253470006.WholeGenome.RP-2158.bam 19965291697 BAM aligned CPTAC3 4c8261c7-0626-4d67-8000-c7d0b5543be0 3acb6e5cc655e78488ad9c56605322d0 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor"} -C3L-04880.WGS.T.hg38 C3L-04880 LSCC WGS tumor CPT0253470006 4fb41834-716f-4c81-a12e-ec631bd9757e_wgs_gdc_realn.bam 58213704449 BAM harmonized CPTAC3 d9d7bc96-f9b4-49f1-bc4c-a86f23e562de 4f50d29262ed0429b4c4442b2a0538f3 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor"} -C3L-04880.WXS.A C3L-04880 LSCC WXS tissue_normal CPT0253480006 CPT0253480006.WholeExome.RP-1303.bam 33670093953 BAM aligned CPTAC3 1e28f14a-c0cc-4c93-b375-cd6897e0c8d5 909d7c2d11ebad719703b55ffd98649a {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.WXS.A.hg38 C3L-04880 LSCC WXS tissue_normal CPT0253480006 1ce99047-b8ca-435f-93fb-102559bd9bcd_wxs_gdc_realn.bam 46112971938 BAM harmonized CPTAC3 226f7258-8c4e-4282-9c22-2617683413b5 b7231a80915beb3e7ac5a2d097734d78 {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04880.WXS.N C3L-04880 LSCC WXS blood_normal CPT0253590002 CPT0253590002.WholeExome.RP-1303.bam 22026892288 BAM aligned CPTAC3 c0e1589c-56f3-4841-85e4-819530ec2f5a 1e86be63fb19405068bbe56f76f08c0b {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04880.WXS.N.hg38 C3L-04880 LSCC WXS blood_normal CPT0253590002 aedbe9f5-5a65-4d32-9583-36c12c019c25_wxs_gdc_realn.bam 30538067256 BAM harmonized CPTAC3 a12ae435-9a48-4f7a-aa44-870537739550 b70b6f3132dffe408c3d742c6ec2d9a9 {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal"} -C3L-04880.WXS.T C3L-04880 LSCC WXS tumor CPT0253470006 CPT0253470006.WholeExome.RP-1303.bam 24731425868 BAM aligned CPTAC3 e68e4b98-ca9a-40bb-8daa-0d7e6ee55377 fce59fce1ada942f022612f416bf589e {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor"} -C3L-04880.WXS.T.hg38 C3L-04880 LSCC WXS tumor CPT0253470006 4fb41834-716f-4c81-a12e-ec631bd9757e_wxs_gdc_realn.bam 33691107613 BAM harmonized CPTAC3 6fcdc69e-0140-4afb-832a-1b06c34f08ce 71c26cd7ab9b6df2a9b23cb6c63899f9 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor"} -C3L-04883.MethArray.Green.A C3L-04883 LSCC Methylation_Array tissue_normal CPT0253670006 204372030161_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 eb10c93c-1e53-4e23-a0f4-2a6f1b9bd6e0 2967e648a705f069091d7ed266ea5f9a {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.MethArray.Green.T C3L-04883 LSCC Methylation_Array tumor CPT0253630006 204372030023_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 1c0d236d-8240-4323-9d76-5b74e2d63f6e e25fa355e2f49edc07fa29b4f9811433 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor"} -C3L-04883.MethArray.Red.A C3L-04883 LSCC Methylation_Array tissue_normal CPT0253670006 204372030161_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 3d2fff5d-d63f-4b13-aa89-fac16debd1f5 4d3e5429c779114bfbd822b6f141b0ac {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.MethArray.Red.T C3L-04883 LSCC Methylation_Array tumor CPT0253630006 204372030023_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 9f464078-67dd-4ea0-849b-77b326e1cbea 3779dfa4e54f012bab441fbaeaef2987 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor"} -C3L-04883.miRNA-Seq.A.hg38 C3L-04883 LSCC miRNA-Seq tissue_normal CPT0253670009 4a33edd1-55fe-4e8a-b18f-ba02099714b3_mirnaseq_gdc_realn.bam 266134817 BAM harmonized CPTAC3 add655c1-aaff-4ae4-840c-d4796386d9d7 6729b1b19a8c1ce825b51affcce55424 {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.miRNA-Seq.S21_L001_R1.T C3L-04883 LSCC miRNA-Seq tumor CPT0253630013 200325_UNC31-K00269_0272_AHHC2NBBXY_TCATTC_S21_L001_R1_001.unaln.bam 172304920 BAM S21_L001_R1 unaligned CPTAC3 b83ed21b-3eca-43e1-8d17-c6ccdea6a9f1 86fb3611d3e48ce15fb1362e615cadc6 {"aliquot_tag": "ALQ_5ed29a84", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04883.miRNA-Seq.S48_L006_R1.A C3L-04883 LSCC miRNA-Seq tissue_normal CPT0253670009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 233582558 BAM S48_L006_R1 unaligned CPTAC3 226ea2cf-91c8-4430-8a61-84f9baed08c4 56c8ea627888a94f24e227e76bb2d9b9 {"aliquot_tag": "ALQ_529ce41b", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.miRNA-Seq.T.hg38 C3L-04883 LSCC miRNA-Seq tumor CPT0253630013 db271d01-a7f3-4049-a2fd-0fe44a88805b_mirnaseq_gdc_realn.bam 192206320 BAM harmonized CPTAC3 67633cee-d9c9-4e01-8b5e-b286fdfaf286 afd47a782978b7fb267e7aa659f71f72 {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor"} -C3L-04883.RNA-Seq.chimeric.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.chimeric.gdc_realn.bam 26940528 BAM chimeric harmonized CPTAC3 6ad93264-73ed-49af-9fd3-17c0fc7ad9d0 d484a395db323524f162e16bac32a28f {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.RNA-Seq.chimeric.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.chimeric.gdc_realn.bam 42485720 BAM chimeric harmonized CPTAC3 4d5a5ea1-2440-4c2b-8261-9ef47ee72392 ba6a8d3a7497a7d7c14095230ae40143 {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor"} -C3L-04883.RNA-Seq.genomic.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.genomic.gdc_realn.bam 7613280714 BAM genomic harmonized CPTAC3 513c3e6c-3f0e-4e96-85fd-62cdb3a224d9 e34a2e9591d4879a95e2999a38571bd9 {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.RNA-Seq.genomic.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.genomic.gdc_realn.bam 7665470410 BAM genomic harmonized CPTAC3 a3f69762-e36d-4c7a-8f73-f6ff06c15438 def11abbdbac17688a7d0d3b893ce30e {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor"} -C3L-04883.RNA-Seq.S29_L008_R1.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R1_001.fastq.gz 3159378545 FASTQ S29_L008_R1 unaligned CPTAC3 ff5812ee-f6d4-40dd-8c4a-fcf956d9c9aa 9af62120288dfe5d03ec2a7fca0e963d {"aliquot_tag": "ALQ_529ce41b", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.RNA-Seq.S29_L008_R1.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R1_001.fastq.gz 3733715364 FASTQ S29_L008_R1 unaligned CPTAC3 0b7f7e47-594f-4ad3-b45f-34b2a1666fda 90b674f89607fcb0d1ef01bfe9b0a18b {"aliquot_tag": "ALQ_5ed29a84", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04883.RNA-Seq.S29_L008_R2.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R2_001.fastq.gz 4047572137 FASTQ S29_L008_R2 unaligned CPTAC3 078f549a-e1ee-482c-bf00-eb731eb4f8d1 d546f6243031eca29403fb1f7cd581c5 {"aliquot_tag": "ALQ_529ce41b", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.RNA-Seq.S29_L008_R2.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R2_001.fastq.gz 3864111802 FASTQ S29_L008_R2 unaligned CPTAC3 1bce6eab-a43b-422e-bc9a-4e6a7f4053c5 1d41b6bcfadc1abce51f3bbf5a9fb473 {"aliquot_tag": "ALQ_5ed29a84", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04883.RNA-Seq.transcriptome.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.transcriptome.gdc_realn.bam 8082377679 BAM transcriptome harmonized CPTAC3 47281401-ae49-40a3-8196-ef4015cd85e3 16b445177a7a83490d870a9daf93c3b1 {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.RNA-Seq.transcriptome.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.transcriptome.gdc_realn.bam 12411814660 BAM transcriptome harmonized CPTAC3 3c6615a5-6d09-4809-ad38-187590021bd9 074f452785b0e0936448320c61994b79 {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor"} -C3L-04883.WGS.N C3L-04883 LSCC WGS blood_normal CPT0253770002 CPT0253770002.WholeGenome.RP-2158.bam 24553953880 BAM aligned CPTAC3 d27a522f-e9ea-4d98-a28f-05c27cf76020 106ef1d2ba431041ce861679d574d940 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal"} -C3L-04883.WGS.N.hg38 C3L-04883 LSCC WGS blood_normal CPT0253770002 a759674b-f5b7-4d18-8019-f1538c01206c_wgs_gdc_realn.bam 74370034798 BAM harmonized CPTAC3 8edd72ad-d390-4eac-b045-89c157968bcb f1e7042d40d03a56f0512804c5c0c9f1 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal"} -C3L-04883.WGS.T C3L-04883 LSCC WGS tumor CPT0253630006 CPT0253630006.WholeGenome.RP-2158.bam 28765276823 BAM aligned CPTAC3 650e265a-f988-4c91-9451-0a506cd46f38 f196479dc87fc1b31a211195d9608865 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor"} -C3L-04883.WGS.T.hg38 C3L-04883 LSCC WGS tumor CPT0253630006 3aa9b82b-f84c-4726-b2b4-ada4bf65547c_wgs_gdc_realn.bam 86462965526 BAM harmonized CPTAC3 824af069-89df-4627-8a57-5a5b826430aa 07001b6620b52f190226180ad5193911 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor"} -C3L-04883.WXS.A C3L-04883 LSCC WXS tissue_normal CPT0253670006 CPT0253670006.WholeExome.RP-1303.bam 21031542775 BAM aligned CPTAC3 238fc677-7a9b-4ecf-92e4-966c7af90308 218ce1a4712e4ddfee5c7fb6a9e4c777 {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.WXS.A.hg38 C3L-04883 LSCC WXS tissue_normal CPT0253670006 2b9c06ad-2dbf-4ff2-ba83-b60cdb68a7a7_wxs_gdc_realn.bam 28602010742 BAM harmonized CPTAC3 c1934b15-ea85-4eae-aa80-4537f7436772 4955ecd42255af3aaf1060c4878a9ffe {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04883.WXS.N C3L-04883 LSCC WXS blood_normal CPT0253770002 CPT0253770002.WholeExome.RP-1303.bam 23909458894 BAM aligned CPTAC3 9a993c0e-095e-488d-9952-4e7defc71905 0fd84921f266796df691f74256f3ebe5 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal"} -C3L-04883.WXS.N.hg38 C3L-04883 LSCC WXS blood_normal CPT0253770002 a759674b-f5b7-4d18-8019-f1538c01206c_wxs_gdc_realn.bam 32204613290 BAM harmonized CPTAC3 a279ebcb-d0a5-4431-bdc7-14da2c622510 aeb16f545cfa6ce628741d12a54fd036 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal"} -C3L-04883.WXS.T C3L-04883 LSCC WXS tumor CPT0253630006 CPT0253630006.WholeExome.RP-1303.bam 24339447151 BAM aligned CPTAC3 6e6bf468-52e8-47d8-bb2b-f4a8446a1ee1 be6f7023f7805e33df7914c6ba05ca12 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor"} -C3L-04883.WXS.T.hg38 C3L-04883 LSCC WXS tumor CPT0253630006 3aa9b82b-f84c-4726-b2b4-ada4bf65547c_wxs_gdc_realn.bam 33381589739 BAM harmonized CPTAC3 77655f78-d4d9-4cb8-ada3-443adf5af349 6524c9f48d4fa21ae4a8fdac12e41474 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor"} -C3L-04887.MethArray.Green.A C3L-04887 LSCC Methylation_Array tissue_normal CPT0253320006 204372030014_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 a216ed0f-dd11-46bd-b54f-33611ecbf5ff c19a612b80e819c64e327332f09e340e {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.MethArray.Green.T C3L-04887 LSCC Methylation_Array tumor CPT0253280006 204367470157_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 11ff3482-e3ea-4d83-a5da-685c21c6d81b ac3c957f648db367dec2948fcf2f729c {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor"} -C3L-04887.MethArray.Red.A C3L-04887 LSCC Methylation_Array tissue_normal CPT0253320006 204372030014_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 5f1a00c2-23d3-43ae-b607-a8778db0978a 3cfadaa31da0ff8f44800d65bbc44ba8 {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.MethArray.Red.T C3L-04887 LSCC Methylation_Array tumor CPT0253280006 204367470157_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 e700635f-54f4-4b3b-bee3-3c97c07fd4ea b4c45921626e10a60839935da4b8e18b {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor"} -C3L-04887.miRNA-Seq.A.hg38 C3L-04887 LSCC miRNA-Seq tissue_normal CPT0253320009 d02e77f5-301c-4032-92fc-6778d3683710_mirnaseq_gdc_realn.bam 230248996 BAM harmonized CPTAC3 1746d937-9061-40c6-a928-2c785267a898 790e76cb186ffd6f499dc74e96c24cb8 {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.miRNA-Seq.S28_L007_R1.T C3L-04887 LSCC miRNA-Seq tumor CPT0253280009 200224_UNC31-K00269_0267_AHC722BBXY_CAAAAG_S28_L007_R1_001.unaln.bam 188271545 BAM S28_L007_R1 unaligned CPTAC3 bba25f7f-a651-49d6-b7f4-4d4d492cf913 772a8cb65e580b4012bb0f7fe926d75a {"aliquot_tag": "ALQ_4b5d31dc", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04887.miRNA-Seq.S46_L006_R1.A C3L-04887 LSCC miRNA-Seq tissue_normal CPT0253320009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCCCGA_S46_L006_R1_001.unaln.bam 206102985 BAM S46_L006_R1 unaligned CPTAC3 126070eb-f4cd-471f-a189-0616ba9d00ae af03efc27168e973546ea09b1f2fdc3b {"aliquot_tag": "ALQ_cab1fad8", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.miRNA-Seq.T.hg38 C3L-04887 LSCC miRNA-Seq tumor CPT0253280009 208a85fa-664e-44a2-94d5-633762f24e91_mirnaseq_gdc_realn.bam 209568619 BAM harmonized CPTAC3 739a985e-b451-4803-b9dd-685b85b1688f 24b526083adbdec4d6a497cfe5296cce {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor"} -C3L-04887.RNA-Seq.chimeric.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.chimeric.gdc_realn.bam 32017752 BAM chimeric harmonized CPTAC3 18386b51-8bde-4eab-9ad2-2843f9aa47a7 2927b5715ea3e04660ddedac28b794e0 {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.RNA-Seq.chimeric.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.chimeric.gdc_realn.bam 31520150 BAM chimeric harmonized CPTAC3 e173fc59-b7fc-48ee-8266-30c508f277cc f9a6018df217be1dc14fb3f406932f45 {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor"} -C3L-04887.RNA-Seq.genomic.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.genomic.gdc_realn.bam 8517996553 BAM genomic harmonized CPTAC3 4e560c95-d6ad-432f-a196-fea9be48e47e 1bbc18b9cbb2d2a521732ed96d57f5d4 {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.RNA-Seq.genomic.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.genomic.gdc_realn.bam 7422779741 BAM genomic harmonized CPTAC3 bdc4b61c-3292-4be1-a799-4579b77a1157 79cee1a4ebd37637dd13c5582a4eabbc {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor"} -C3L-04887.RNA-Seq.S12_L003_R1.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3678355601 FASTQ S12_L003_R1 unaligned CPTAC3 c6488efc-f8d4-4787-a5fe-b1d9826b2f1a 2f14616893c8c6fd4da26d599e5c7284 {"aliquot_tag": "ALQ_4b5d31dc", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04887.RNA-Seq.S12_L003_R2.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4010827900 FASTQ S12_L003_R2 unaligned CPTAC3 db24531a-a3b5-40f3-938c-17292be8b1e1 2008ed4cb073c17beaf231cbd0b3f601 {"aliquot_tag": "ALQ_4b5d31dc", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04887.RNA-Seq.S31_L008_R1.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R1_001.fastq.gz 3774059091 FASTQ S31_L008_R1 unaligned CPTAC3 7f9d157c-47cc-484c-b95d-106872361319 be4a0d2e016cd9eb8f77c8338be80302 {"aliquot_tag": "ALQ_cab1fad8", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.RNA-Seq.S31_L008_R2.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R2_001.fastq.gz 4691084386 FASTQ S31_L008_R2 unaligned CPTAC3 1fd26213-56e3-4a31-80bb-1a34a7f104f1 920ef785ccfa599db5aeef6511a5561b {"aliquot_tag": "ALQ_cab1fad8", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.RNA-Seq.transcriptome.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.transcriptome.gdc_realn.bam 9519585111 BAM transcriptome harmonized CPTAC3 23c3989c-fc41-49d6-9c87-6a0a4e495e06 ff55e486461058485de857b5951074fe {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.RNA-Seq.transcriptome.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.transcriptome.gdc_realn.bam 12176394958 BAM transcriptome harmonized CPTAC3 892c38c8-b8c5-4a33-ac65-77b8dfbc3007 a428ab9a8ababf9e927e45ab4c08774f {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor"} -C3L-04887.WGS.N C3L-04887 LSCC WGS blood_normal CPT0253410002 CPT0253410002.WholeGenome.RP-2158.bam 29189595327 BAM aligned CPTAC3 a37e2e04-cd19-4797-80c2-28747f6e75a9 758ad934eaef03266808ff39e3d4b564 {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal"} -C3L-04887.WGS.N C3L-04887 LSCC WGS blood_normal CPT0253410002 CPT0253410002.WholeGenome.RP-2158.bam 29241738931 BAM aligned CPTAC3 1aab6bdf-e132-429f-9e7a-f865c216a0c2 ba325d3e9c7f90281ab83aa481a82cbe {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal"} -C3L-04887.WGS.N.hg38 C3L-04887 LSCC WGS blood_normal CPT0253410002 5cffaff7-c587-4952-84c9-a4f0b8fe5baf_wgs_gdc_realn.bam 88101377215 BAM harmonized CPTAC3 e49949ea-616f-43c1-9c7b-977d869cad50 edd5dea05056d1a5f2e208c5c393a389 {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal"} -C3L-04887.WGS.T C3L-04887 LSCC WGS tumor CPT0253280006 CPT0253280006.WholeGenome.RP-2158.bam 28364211537 BAM aligned CPTAC3 b4fbe6a1-22e9-4bf3-99ca-b35ec4b43ccd efdf2f451f12008902cf0f79951ce2e5 {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor"} -C3L-04887.WGS.T.hg38 C3L-04887 LSCC WGS tumor CPT0253280006 0651482e-849b-42f0-9be2-ca88eee9c2a3_wgs_gdc_realn.bam 83234656114 BAM harmonized CPTAC3 bc592ed5-c7b8-4882-bd0e-d13a78aed20d 6534da0a77cfa45d535cd95e8d30e101 {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor"} -C3L-04887.WXS.A C3L-04887 LSCC WXS tissue_normal CPT0253320006 CPT0253320006.WholeExome.RP-1303.bam 26869120119 BAM aligned CPTAC3 d5ab7ad5-d536-4876-9b97-1f85576245c7 fe358c0c9d5ca6a0ea5df57adf593697 {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.WXS.A.hg38 C3L-04887 LSCC WXS tissue_normal CPT0253320006 212149b4-3eb0-4d0a-ab86-982e1772a960_wxs_gdc_realn.bam 36757413330 BAM harmonized CPTAC3 e7ba0d7e-a975-46d5-bdc5-b0e4d36cbc38 56446eab69540124729071096c5a388a {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04887.WXS.N C3L-04887 LSCC WXS blood_normal CPT0253410002 CPT0253410002.WholeExome.RP-1303.bam 25845856122 BAM aligned CPTAC3 040ee52f-f34c-4fcd-8117-ddfec80bf026 64cff2b7070b2aac5e74af9db1c42c35 {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal"} -C3L-04887.WXS.N.hg38 C3L-04887 LSCC WXS blood_normal CPT0253410002 5cffaff7-c587-4952-84c9-a4f0b8fe5baf_wxs_gdc_realn.bam 35083668351 BAM harmonized CPTAC3 30b08834-304d-4c22-b2ec-f3223be756f3 660314084d2f8d0d546d2eead441076a {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal"} -C3L-04887.WXS.T C3L-04887 LSCC WXS tumor CPT0253280006 CPT0253280006.WholeExome.RP-1303.bam 18822691383 BAM aligned CPTAC3 d69bc50b-d2d3-46bd-86e9-fcf21b7f8c9a 53182dae6c0057e3c9327e7442134320 {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor"} -C3L-04887.WXS.T.hg38 C3L-04887 LSCC WXS tumor CPT0253280006 0651482e-849b-42f0-9be2-ca88eee9c2a3_wxs_gdc_realn.bam 25807446542 BAM harmonized CPTAC3 784d3231-9a48-44e0-9194-4caddb927c84 cc3523211c567af68216a8baa923dded {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor"} -C3L-04888.MethArray.Green.A C3L-04888 LSCC Methylation_Array tissue_normal CPT0254220006 204372030127_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6c79623b-afd2-41df-a58b-d04e6f69e4f1 35da7ffa328d50d0eb19333da443e4bb {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.MethArray.Green.T C3L-04888 LSCC Methylation_Array tumor CPT0254190006 204372030139_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6c787069-bbff-43fe-80c6-0e77107fc977 cb0b1f1fef81682970fd3a1edec228d7 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor"} -C3L-04888.MethArray.Red.A C3L-04888 LSCC Methylation_Array tissue_normal CPT0254220006 204372030127_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 946d159c-89b0-4032-b7f5-cdc033b1a9bc d57740e6f84e505eed9aebb38b90e58a {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.MethArray.Red.T C3L-04888 LSCC Methylation_Array tumor CPT0254190006 204372030139_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 330e766a-d2ef-413b-a16a-e69762940a5b 51b03d7f6c86f54fba41aa2ecd1f3634 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor"} -C3L-04888.miRNA-Seq.A.hg38 C3L-04888 LSCC miRNA-Seq tissue_normal CPT0254220009 88c8a8b1-5992-44a9-8a62-a76411009b8b_mirnaseq_gdc_realn.bam 257125033 BAM harmonized CPTAC3 3f4f6029-2018-43bb-bc0e-6b487cd67e47 4c14b673fc6f1990953110a883e1c646 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.miRNA-Seq.S24_L007_R1.A C3L-04888 LSCC miRNA-Seq tissue_normal CPT0254220009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TTAGGC_S24_L007_R1_001.unaln.bam 231430370 BAM S24_L007_R1 unaligned CPTAC3 8b6a465d-3f3d-487b-84e1-780f64e1bb8e 96e147b0aa71f331af2b2455cb193460 {"aliquot_tag": "ALQ_c44a17f3", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.miRNA-Seq.S32_L007_R1.T C3L-04888 LSCC miRNA-Seq tumor CPT0254190009 200224_UNC31-K00269_0267_AHC722BBXY_CACTCA_S32_L007_R1_001.unaln.bam 234244879 BAM S32_L007_R1 unaligned CPTAC3 570c32ee-f2e3-4756-92f7-2f3d61086880 35b5a5eca14b69f887c26fb04975c354 {"aliquot_tag": "ALQ_350e544c", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04888.miRNA-Seq.T.hg38 C3L-04888 LSCC miRNA-Seq tumor CPT0254190009 a24146c7-9a8c-4ef6-b344-9412cdb61cc7_mirnaseq_gdc_realn.bam 262392851 BAM harmonized CPTAC3 ad3dda41-6bbf-4ee6-b407-d2dc926ec6af 158b221b19cbc688f26d75daf3312041 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor"} -C3L-04888.RNA-Seq.chimeric.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.chimeric.gdc_realn.bam 91067359 BAM chimeric harmonized CPTAC3 49e960f7-471a-4305-af97-8c25a19b7de3 a3446c2b3292023d493562fb005456f4 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.RNA-Seq.chimeric.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.chimeric.gdc_realn.bam 44760746 BAM chimeric harmonized CPTAC3 d06fb238-00a8-4b29-a28c-19771af669a1 459f8967dec16460b849234374615a29 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor"} -C3L-04888.RNA-Seq.genomic.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.genomic.gdc_realn.bam 7798814943 BAM genomic harmonized CPTAC3 6af86fbe-58df-40af-bb3e-c1e3d8f7df1f 32d987e325abeeec4c00f5420918b0d1 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.RNA-Seq.genomic.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.genomic.gdc_realn.bam 9523907482 BAM genomic harmonized CPTAC3 e911331c-8a58-4439-827e-f1b6389a1b62 9dc36263dfffc15c1027272f6806d9e6 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor"} -C3L-04888.RNA-Seq.S16_L004_R1.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R1_001.fastq.gz 4704855751 FASTQ S16_L004_R1 unaligned CPTAC3 29bd9170-cb70-4973-8fbb-7d1ee12d86d2 1cf04d2df19bff694780ba35aeb089b4 {"aliquot_tag": "ALQ_350e544c", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04888.RNA-Seq.S16_L004_R2.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R2_001.fastq.gz 5039303678 FASTQ S16_L004_R2 unaligned CPTAC3 1eab0026-17bc-4e7a-9184-3e0612798272 e027ca8f5298a7bd9cd1ed669230cee9 {"aliquot_tag": "ALQ_350e544c", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04888.RNA-Seq.S1_L001_R1.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R1_001.fastq.gz 3746396808 FASTQ S1_L001_R1 unaligned CPTAC3 2ee25616-d457-4e76-bebe-3a10ff073b3d 48ce7160ab4d2017ccbb0b04d39f3b15 {"aliquot_tag": "ALQ_c44a17f3", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.RNA-Seq.S1_L001_R2.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R2_001.fastq.gz 4180707908 FASTQ S1_L001_R2 unaligned CPTAC3 eeafd62f-8a54-4036-a906-1de79beffa90 6e59ec4a324e4cefb822479bcb43fbdc {"aliquot_tag": "ALQ_c44a17f3", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.RNA-Seq.transcriptome.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.transcriptome.gdc_realn.bam 9440645552 BAM transcriptome harmonized CPTAC3 1365c20b-2700-434d-90be-048eb1dd07a6 ff1da17b48b9168e19040fb58137b3e0 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.RNA-Seq.transcriptome.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.transcriptome.gdc_realn.bam 12801374329 BAM transcriptome harmonized CPTAC3 45410c10-bbef-4661-ad1b-3885f6e92943 5c0dbd9b50b2c525b80eaebdf248f561 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor"} -C3L-04888.WGS.N C3L-04888 LSCC WGS blood_normal CPT0254310002 CPT0254310002.WholeGenome.RP-2158.bam 26253581394 BAM aligned CPTAC3 b2d8010e-d8a8-48b6-b4f8-dcdc18c41399 51e2b17ee89ed023b1561fc33de59049 {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04888.WGS.N.hg38 C3L-04888 LSCC WGS blood_normal CPT0254310002 4fb6deda-0533-4e32-9ccb-5e10d36c9ff1_wgs_gdc_realn.bam 76922524747 BAM harmonized CPTAC3 fc9b8c98-999c-4644-8658-7bb34c36513b cd63a1968b9e8e64f9d42c55ce6d2fa5 {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04888.WGS.T C3L-04888 LSCC WGS tumor CPT0254190006 CPT0254190006.WholeGenome.RP-2158.bam 30154002169 BAM aligned CPTAC3 50b292ad-31dd-4f70-9efb-05aa968e64dd 61cb9a0ed180463e48811a212e76dc91 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor"} -C3L-04888.WGS.T.hg38 C3L-04888 LSCC WGS tumor CPT0254190006 c3b26a8b-5ea1-40f1-97c6-b5a07db8d558_wgs_gdc_realn.bam 91240677303 BAM harmonized CPTAC3 15c27f47-6aef-4abd-adaa-12766157c472 61f758cccc353954a379b91c28d91548 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor"} -C3L-04888.WXS.A C3L-04888 LSCC WXS tissue_normal CPT0254220006 CPT0254220006.WholeExome.RP-1303.bam 20583692172 BAM aligned CPTAC3 991df4be-92bc-421c-957f-b55bc1eaf575 f6e3aeeb2fd5721eaebbccd46ebcafb0 {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.WXS.A.hg38 C3L-04888 LSCC WXS tissue_normal CPT0254220006 8b195b0f-8852-4237-bf0a-8e28a4b40dd8_wxs_gdc_realn.bam 29145132011 BAM harmonized CPTAC3 fee27fb5-b6a4-4751-962f-a2890be8d5e6 6ffaf95a2aeb72fc2128a1b6d4cc046b {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04888.WXS.N C3L-04888 LSCC WXS blood_normal CPT0254310002 CPT0254310002.WholeExome.RP-1303.bam 25861636484 BAM aligned CPTAC3 21004fe8-9192-46fa-92f0-6959f83b7bab ec6bc30a2c7b44346e768bae8610e434 {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04888.WXS.N.hg38 C3L-04888 LSCC WXS blood_normal CPT0254310002 4fb6deda-0533-4e32-9ccb-5e10d36c9ff1_wxs_gdc_realn.bam 34109668510 BAM harmonized CPTAC3 f9e163f7-d12b-4f38-a8fa-3fb88f7e991b f612f888fcaa4429a3a0f45d90d1588e {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal"} -C3L-04888.WXS.T C3L-04888 LSCC WXS tumor CPT0254190006 CPT0254190006.WholeExome.RP-1303.bam 29653630464 BAM aligned CPTAC3 efbee664-9b89-417f-99ed-d8c2708b2dca 48a89c463dd54cb1032feb3269ec1f4a {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor"} -C3L-04888.WXS.T.hg38 C3L-04888 LSCC WXS tumor CPT0254190006 c3b26a8b-5ea1-40f1-97c6-b5a07db8d558_wxs_gdc_realn.bam 40481112346 BAM harmonized CPTAC3 51236068-0f0b-4571-8213-68db8336a90e 04c3bed460bc6d1e8a9d009f8d6c6f93 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor"} -C3L-04889.MethArray.Green.A C3L-04889 LSCC Methylation_Array tissue_normal CPT0267700006 204372030087_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6fff97d1-1008-45d2-a713-51f038069983 db9734efa353c5c0c075e14d702be1c4 {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.MethArray.Green.T C3L-04889 LSCC Methylation_Array tumor CPT0267670006 204367490082_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d6e09eae-52f3-4e44-8b69-e2fa32937764 5368129c26f538ae8968e9415fbdd44f {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor"} -C3L-04889.MethArray.Red.A C3L-04889 LSCC Methylation_Array tissue_normal CPT0267700006 204372030087_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 6f66a507-3b1f-4f26-a29f-e650c4a8f4b4 b82b08a634d9f94698f8c986a028c613 {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.MethArray.Red.T C3L-04889 LSCC Methylation_Array tumor CPT0267670006 204367490082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 c89bf7e3-0394-4f74-b7b2-72911fe2e7bc ffce9d52f17e3f8e080c659f8df503a9 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor"} -C3L-04889.miRNA-Seq.A.hg38 C3L-04889 LSCC miRNA-Seq tissue_normal CPT0267700009 2083e07b-b411-4988-aabd-02d3ff33631a_mirnaseq_gdc_realn.bam 228887025 BAM harmonized CPTAC3 3886a057-c679-40f2-8535-f72fc45dd419 22bef25d33af31745008d5c2cf23348d {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.miRNA-Seq.S13_L006_R1.T C3L-04889 LSCC miRNA-Seq tumor CPT0267670009 200224_UNC31-K00269_0267_AHC722BBXY_AGTCAA_S13_L006_R1_001.unaln.bam 227953235 BAM S13_L006_R1 unaligned CPTAC3 2262edab-3d16-4cd8-8013-c39abe882f2d b681cef1e992b8eb1a67f657757304ac {"aliquot_tag": "ALQ_285cc7eb", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04889.miRNA-Seq.S4_L007_R1.A C3L-04889 LSCC miRNA-Seq tissue_normal CPT0267700009 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTTCC_S4_L007_R1_001.unaln.bam 204001591 BAM S4_L007_R1 unaligned CPTAC3 9de8bdef-1121-40b5-a804-4596cc33f565 689775963bed915061b28c000da9c9e3 {"aliquot_tag": "ALQ_5120c85e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.miRNA-Seq.T.hg38 C3L-04889 LSCC miRNA-Seq tumor CPT0267670009 eaf92313-9abf-46b5-bfda-6f1ca9a90a03_mirnaseq_gdc_realn.bam 248714832 BAM harmonized CPTAC3 2324052c-da43-4128-b89f-c5baa3b405f5 8be2a59dff8dd6590f70c01936fe71e8 {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor"} -C3L-04889.RNA-Seq.chimeric.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.chimeric.gdc_realn.bam 82907787 BAM chimeric harmonized CPTAC3 c4f91a75-91ca-4a19-ac2c-4d8272f7d0f2 4ab1d4731df5214d652ecca8ea006f7f {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.RNA-Seq.chimeric.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.chimeric.gdc_realn.bam 42889597 BAM chimeric harmonized CPTAC3 fae13732-d400-443a-9056-7f52ee5094a0 574d04ee0d80e077be54a196d3c5b3f3 {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor"} -C3L-04889.RNA-Seq.genomic.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.genomic.gdc_realn.bam 8071297089 BAM genomic harmonized CPTAC3 c5142e0e-d83f-46b4-8379-fe4b94920150 6932bf0444b24f6880f13b0cbd689ad4 {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.RNA-Seq.genomic.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.genomic.gdc_realn.bam 8227485803 BAM genomic harmonized CPTAC3 77d377b1-5c55-46cb-a043-c383c5354620 403bf9e723712936a3f09a22029a692e {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor"} -C3L-04889.RNA-Seq.S15_L004_R1.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R1_001.fastq.gz 4003967585 FASTQ S15_L004_R1 unaligned CPTAC3 118ec532-9720-42b4-8294-d45af9626739 701cc2f7d5c5c4cf6ab5947e00827553 {"aliquot_tag": "ALQ_5120c85e", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.RNA-Seq.S15_L004_R2.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R2_001.fastq.gz 4410790939 FASTQ S15_L004_R2 unaligned CPTAC3 729a5650-c170-412b-ab2f-8e93883b4eae c09143b47acef6eac82076b1600add9f {"aliquot_tag": "ALQ_5120c85e", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.RNA-Seq.S29_L008_R1.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R1_001.fastq.gz 3797742630 FASTQ S29_L008_R1 unaligned CPTAC3 c87b369f-d2b6-46f4-bcca-290a7a5b8b08 6e13a5627d3879d56f35feb90380f796 {"aliquot_tag": "ALQ_285cc7eb", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04889.RNA-Seq.S29_L008_R2.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R2_001.fastq.gz 4104660907 FASTQ S29_L008_R2 unaligned CPTAC3 324c04ab-2b75-4417-90c8-01debcd8df70 08f0a866d88b54eebdd7ae0a6e63addb {"aliquot_tag": "ALQ_285cc7eb", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04889.RNA-Seq.transcriptome.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.transcriptome.gdc_realn.bam 9814069627 BAM transcriptome harmonized CPTAC3 e2d8d9a4-a104-4707-9e1d-450077dec6e5 3ff2affdba7243f783fdf82f0873877c {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.RNA-Seq.transcriptome.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.transcriptome.gdc_realn.bam 10286490519 BAM transcriptome harmonized CPTAC3 08e99d5f-f8c2-4ebb-b43e-375abd60e795 23f7045a47bc7e95b4252ebb24c6efce {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor"} -C3L-04889.WGS.N C3L-04889 LSCC WGS blood_normal CPT0267790002 CPT0267790002.WholeGenome.RP-2158.bam 25689343028 BAM aligned CPTAC3 85fc8b87-8297-4e43-bdaf-3f5ed87c23a2 3f8d1a643b3465d730172a5f8ecdcb88 {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-04889.WGS.N.hg38 C3L-04889 LSCC WGS blood_normal CPT0267790002 a53c2467-4e6f-4d84-a6b8-5c26eca640ca_wgs_gdc_realn.bam 75817414984 BAM harmonized CPTAC3 d5a6e3b7-70c9-49fa-a2a1-66a924932a1f b596742dc702a8679356c15ac5191616 {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-04889.WGS.T C3L-04889 LSCC WGS tumor CPT0267670006 CPT0267670006.WholeGenome.RP-2158.bam 24753593308 BAM aligned CPTAC3 1911ae31-f68a-46e3-a610-e6e77e8fbcb1 3e086a549d9bfe576546fd7be9f8f1a7 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor"} -C3L-04889.WGS.T.hg38 C3L-04889 LSCC WGS tumor CPT0267670006 4bfb9da1-f676-4dbd-b71a-ef9a54bf2bb8_wgs_gdc_realn.bam 72875650257 BAM harmonized CPTAC3 247ecd00-dc1d-4d7f-815b-d53768c379b0 c98210e64d2465d4eb6255c734ed91c1 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor"} -C3L-04889.WXS.A C3L-04889 LSCC WXS tissue_normal CPT0267700006 CPT0267700006.WholeExome.RP-1303.bam 19215035059 BAM aligned CPTAC3 819bfe54-ef80-4c19-9a3e-40a26ecc9775 00a132a3f85b2011abe3a0ae07d93695 {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.WXS.A.hg38 C3L-04889 LSCC WXS tissue_normal CPT0267700006 9dc1ff97-a1ac-4c5d-b93b-0cc9c2233d91_wxs_gdc_realn.bam 25363547841 BAM harmonized CPTAC3 947dd89c-be7b-48ae-b91a-9d3cf6faad10 aa4e702507700e0b3e5afe00deff177a {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04889.WXS.N C3L-04889 LSCC WXS blood_normal CPT0267790002 CPT0267790002.WholeExome.RP-1303.bam 26975737133 BAM aligned CPTAC3 741d9ce6-034d-4c14-9599-5fb9e3e7c2d7 b5bb29ea590fcae52554e17947833c1c {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-04889.WXS.N.hg38 C3L-04889 LSCC WXS blood_normal CPT0267790002 a53c2467-4e6f-4d84-a6b8-5c26eca640ca_wxs_gdc_realn.bam 36013048356 BAM harmonized CPTAC3 bd0c5d71-8603-4e53-a7a3-9edf4c20f86f a38e3ef643c97a7a2736bc67ae98ee18 {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-04889.WXS.T C3L-04889 LSCC WXS tumor CPT0267670006 CPT0267670006.WholeExome.RP-1303.bam 23154056179 BAM aligned CPTAC3 486d04ac-def6-45e7-8b1b-5846c8534b96 ff4421b4610465f435b49d811c486a46 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor"} -C3L-04889.WXS.T.hg38 C3L-04889 LSCC WXS tumor CPT0267670006 4bfb9da1-f676-4dbd-b71a-ef9a54bf2bb8_wxs_gdc_realn.bam 31552221371 BAM harmonized CPTAC3 4cb79a61-672a-4937-aa86-72ecf8e3bced f224ec566b154833db2b6266272e2d78 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor"} -C3L-04912.MethArray.Green.A C3L-04912 LSCC Methylation_Array tissue_normal CPT0254400006 204372030085_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4f251616-9eef-499f-b264-6763300ae64c 8851ebed8e1742f25af87a462f12bc91 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.MethArray.Green.T C3L-04912 LSCC Methylation_Array tumor CPT0254350006 204372030079_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1b1d67cf-9806-434d-a56a-d389d924cc31 1a80073890b13a831794d847f0e98f9b {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor"} -C3L-04912.MethArray.Red.A C3L-04912 LSCC Methylation_Array tissue_normal CPT0254400006 204372030085_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 2b9b1ac4-1c7a-4e3a-90e2-a17486e31d15 5d8b248b29838015d2b0d64751155de1 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.MethArray.Red.T C3L-04912 LSCC Methylation_Array tumor CPT0254350006 204372030079_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 044345af-eef2-41cc-afd4-565d282f6ef5 279966cee856504c2f37394a639ee9fa {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor"} -C3L-04912.miRNA-Seq.A.hg38 C3L-04912 LSCC miRNA-Seq tissue_normal CPT0254400009 f5e30b7b-70e4-47a3-b654-51bd00144977_mirnaseq_gdc_realn.bam 294712586 BAM harmonized CPTAC3 5943f382-b99b-4c21-ba28-3ea24bf519f8 1a38d9872fec5cb04cd29c75d6c0e2c5 {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.miRNA-Seq.S23_L007_R1.A C3L-04912 LSCC miRNA-Seq tissue_normal CPT0254400009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TGACCA_S23_L007_R1_001.unaln.bam 261205736 BAM S23_L007_R1 unaligned CPTAC3 53b7acc9-abdc-43b5-913b-4bbec104f0b7 8fdcbe05ec7dd42d53770b0d99fc8263 {"aliquot_tag": "ALQ_68d3a78e", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.miRNA-Seq.S33_L007_R1.T C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 200224_UNC31-K00269_0267_AHC722BBXY_CAGGCG_S33_L007_R1_001.unaln.bam 153277532 BAM S33_L007_R1 unaligned CPTAC3 7ecb8141-2188-4a64-8ea5-e7ed6a20e1eb 2516c17faf8c4a463faff5b05bda6deb {"aliquot_tag": "ALQ_bd361846", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04912.miRNA-Seq.S4_L001_R1.T C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGGCG_S4_L001_R1_001.unaln.bam 168440443 BAM S4_L001_R1 unaligned CPTAC3 343f92d5-4124-4231-8700-92a3990424c7 823610fd9e03ab58452ad383975290d7 {"aliquot_tag": "ALQ_bd361846", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04912.miRNA-Seq.T.hg38 C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 dd47a243-a0b5-4e4a-8977-1875b9e9b01d_mirnaseq_gdc_realn.bam 374447994 BAM harmonized CPTAC3 492698b9-a9fd-4605-a1ac-4244e8db64c9 088f63b6e2b4e4c03fb622e4abf471b9 {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor"} -C3L-04912.RNA-Seq.chimeric.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.chimeric.gdc_realn.bam 72821669 BAM chimeric harmonized CPTAC3 a8d55603-6b05-4bf1-a4fa-0d0d31452cc5 6564ba5db6446c1270808eca594adcae {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.RNA-Seq.chimeric.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.chimeric.gdc_realn.bam 32012959 BAM chimeric harmonized CPTAC3 6bc734ac-7b80-4102-bb85-68ba95ad4ce3 e1676bd70b46350175c01230f80b1c23 {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor"} -C3L-04912.RNA-Seq.genomic.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.genomic.gdc_realn.bam 7656141607 BAM genomic harmonized CPTAC3 54bae130-2885-401f-81b0-4d7735049c6d d74152a6c9c40e4ffee8bba83efc650b {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.RNA-Seq.genomic.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.genomic.gdc_realn.bam 7168922861 BAM genomic harmonized CPTAC3 394a88fc-2410-4d15-a399-76cd0e6112d3 2e981a5e9b865f5aea905e7e0237722b {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor"} -C3L-04912.RNA-Seq.S1_L001_R1.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R1_001.fastq.gz 3436316001 FASTQ S1_L001_R1 unaligned CPTAC3 f9770c9b-09a9-4df6-a6ea-edbdfeb60bf0 cd3fc82ada0f31d34446c244a647a7bd {"aliquot_tag": "ALQ_bd361846", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04912.RNA-Seq.S1_L001_R2.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R2_001.fastq.gz 3923198924 FASTQ S1_L001_R2 unaligned CPTAC3 8b0cb2b2-bd84-4f90-a21c-42eb722d5545 da22980ee6135a1b2bdd625d9dd4bc44 {"aliquot_tag": "ALQ_bd361846", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04912.RNA-Seq.S4_L001_R1.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R1_001.fastq.gz 3587377683 FASTQ S4_L001_R1 unaligned CPTAC3 036496c6-d921-4da0-a332-7c70a5475890 b5302feb5071433391d81d6630c38591 {"aliquot_tag": "ALQ_68d3a78e", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.RNA-Seq.S4_L001_R2.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R2_001.fastq.gz 4113520732 FASTQ S4_L001_R2 unaligned CPTAC3 1a3fc70a-ecd1-45d6-a44d-cc124aafdbb3 f61f775c9972d616f108cf234e3f156b {"aliquot_tag": "ALQ_68d3a78e", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.RNA-Seq.transcriptome.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.transcriptome.gdc_realn.bam 9147088091 BAM transcriptome harmonized CPTAC3 7a8536ca-a5df-44d4-a320-f1a3d3b936a5 85eca8c7ee48ce9b8ff953b07ef51411 {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.RNA-Seq.transcriptome.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.transcriptome.gdc_realn.bam 8986186648 BAM transcriptome harmonized CPTAC3 8a003023-3ebe-44a4-8d33-9fc021594afb e137c614fadda20210cd1b5eb12e05c6 {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor"} -C3L-04912.WGS.N C3L-04912 LSCC WGS blood_normal CPT0254490002 CPT0254490002.WholeGenome.RP-2158.bam 32121951882 BAM aligned CPTAC3 e80b8a5b-a8f3-47b0-ac58-23f3fc09c711 f85d8899c3d0b8b543119392deba95dc {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal"} -C3L-04912.WGS.N.hg38 C3L-04912 LSCC WGS blood_normal CPT0254490002 00c8e708-0b26-4993-a88c-77f89ee28cff_wgs_gdc_realn.bam 93877810004 BAM harmonized CPTAC3 7bcb216f-65c8-426f-8151-d03834b16ccb 62eb0710442958cb73445c8fa54b2e4e {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal"} -C3L-04912.WGS.T C3L-04912 LSCC WGS tumor CPT0254350006 CPT0254350006.WholeGenome.RP-2158.bam 24090676120 BAM aligned CPTAC3 35091386-0e2d-4abf-bebd-33426f47adf6 6b2aadb1ce1fe2f112a9ff4097009566 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor"} -C3L-04912.WGS.T.hg38 C3L-04912 LSCC WGS tumor CPT0254350006 1acb5add-1160-4bcb-8121-aad43a85ae38_wgs_gdc_realn.bam 72176061076 BAM harmonized CPTAC3 9e2f0f6f-9196-435a-ace9-917e80e5f254 b0f73ad975bd32ba103fe1aa4ab4da90 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor"} -C3L-04912.WXS.A C3L-04912 LSCC WXS tissue_normal CPT0254400006 CPT0254400006.WholeExome.RP-1303.bam 22048583718 BAM aligned CPTAC3 277193b6-c8cf-416d-8f50-50e52bea3fcd f7b993336122dd36baaea6f28db1d762 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.WXS.A.hg38 C3L-04912 LSCC WXS tissue_normal CPT0254400006 0ce3597d-5ef7-49bc-960a-1dadfd1a76e1_wxs_gdc_realn.bam 29726878799 BAM harmonized CPTAC3 ce80e545-8063-4a52-b9f6-027de2b3c908 47c9411f5e9c2fa2142c280431cb67c9 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04912.WXS.N C3L-04912 LSCC WXS blood_normal CPT0254490002 CPT0254490002.WholeExome.RP-1303.bam 24533875733 BAM aligned CPTAC3 2da1efb2-8d01-42b8-8585-d0a39b43f9d1 0c42980bb14128e2a17c15be5c61f97b {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal"} -C3L-04912.WXS.N.hg38 C3L-04912 LSCC WXS blood_normal CPT0254490002 00c8e708-0b26-4993-a88c-77f89ee28cff_wxs_gdc_realn.bam 33243564159 BAM harmonized CPTAC3 6888dd68-8130-44fe-a636-1e053a59637c 2a22459fffd4b8012f19dc6a770cfdff {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal"} -C3L-04912.WXS.T C3L-04912 LSCC WXS tumor CPT0254350006 CPT0254350006.WholeExome.RP-1303.bam 22538882838 BAM aligned CPTAC3 1be982f5-b457-4df5-89d2-5d0a6c3f61eb 3fede06fdbb62ab72ea97c7b0efd0177 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor"} -C3L-04912.WXS.T.hg38 C3L-04912 LSCC WXS tumor CPT0254350006 1acb5add-1160-4bcb-8121-aad43a85ae38_wxs_gdc_realn.bam 31047128070 BAM harmonized CPTAC3 ca9a76bf-ba52-4ffb-a0ca-a23ee57bcc17 20f4207587b8fcd9babdc2865ae9ee28 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor"} -C3L-04916.MethArray.Green.A C3L-04916 LSCC Methylation_Array tissue_normal CPT0253860006 204367470131_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 058cd2ee-9b4d-4068-bc34-0c32374884b2 1cbc8f9844c7a7622abba0e9e9d59707 {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.MethArray.Green.T C3L-04916 LSCC Methylation_Array tumor CPT0253820006 204367490056_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 0ffac867-20aa-416b-a009-bb73f4ed6a99 712a28bc097a94f14b237120958b6068 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor"} -C3L-04916.MethArray.Red.A C3L-04916 LSCC Methylation_Array tissue_normal CPT0253860006 204367470131_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 01fecba0-9698-48f1-ad88-9639a5821308 70c382ad4c296f76a6d0806876a9e760 {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.MethArray.Red.T C3L-04916 LSCC Methylation_Array tumor CPT0253820006 204367490056_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 db816541-f766-43aa-9bf1-dcc38b0670af 15aa15844c0e466fac41f088c6b8c322 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor"} -C3L-04916.miRNA-Seq.A.hg38 C3L-04916 LSCC miRNA-Seq tissue_normal CPT0253860009 bc73a744-bfc8-402c-b4f9-4f841397cec8_mirnaseq_gdc_realn.bam 244716330 BAM harmonized CPTAC3 0fc8227a-b774-499b-9d6f-8d9126748a9b 2ea3eca7a5153d4b92f02d4935b60302 {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.miRNA-Seq.S30_L007_R1.T C3L-04916 LSCC miRNA-Seq tumor CPT0253820009 200224_UNC31-K00269_0267_AHC722BBXY_CACCGG_S30_L007_R1_001.unaln.bam 193871673 BAM S30_L007_R1 unaligned CPTAC3 0904ad3f-cc9e-4a93-bfa6-79eaea1873bf c0545c72642711a28b0dd00a813aae87 {"aliquot_tag": "ALQ_a0760a1b", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04916.miRNA-Seq.S5_L007_R1.A C3L-04916 LSCC miRNA-Seq tissue_normal CPT0253860009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATCACG_S5_L007_R1_001.unaln.bam 218899294 BAM S5_L007_R1 unaligned CPTAC3 c0acae60-0cb4-4efd-9288-a20a6da094b8 3b2501e4479d35ce846ae0f9e63a6ab8 {"aliquot_tag": "ALQ_55f6acdb", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.miRNA-Seq.T.hg38 C3L-04916 LSCC miRNA-Seq tumor CPT0253820009 e39a35af-0a4c-4b34-9c98-161cdab47f17_mirnaseq_gdc_realn.bam 214894132 BAM harmonized CPTAC3 afc8adc7-e87e-46a1-8ec0-58ab9f3e72d2 83df8b4ea683e15642f5dd896151843a {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor"} -C3L-04916.RNA-Seq.chimeric.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.chimeric.gdc_realn.bam 86947610 BAM chimeric harmonized CPTAC3 cc0c4c82-297f-40eb-8d7d-51209146f777 dfa1525027f8b3cfa4904c00c3fe6585 {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.RNA-Seq.chimeric.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.chimeric.gdc_realn.bam 30583865 BAM chimeric harmonized CPTAC3 92014b85-caff-449f-b211-32fedbd0a2fb ffbe66fbfa7364b5b8eb7534ff2dfd57 {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor"} -C3L-04916.RNA-Seq.genomic.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.genomic.gdc_realn.bam 8719010305 BAM genomic harmonized CPTAC3 30b96c26-8d5b-46f2-b67e-f44aa90247e1 b73a683099d4bab51825c76f9915a1ea {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.RNA-Seq.genomic.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.genomic.gdc_realn.bam 7738383461 BAM genomic harmonized CPTAC3 cd418da1-6167-4741-9e2f-a0bc27f123e2 dac8a96fb33b92fa0178d5245a48b6a5 {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor"} -C3L-04916.RNA-Seq.S14_L004_R1.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R1_001.fastq.gz 3753245339 FASTQ S14_L004_R1 unaligned CPTAC3 db28b53c-8f86-46dd-b62b-989f8909d92e 16952691e0dcd8c975a2c9a7ff1fe3ff {"aliquot_tag": "ALQ_a0760a1b", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04916.RNA-Seq.S14_L004_R2.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R2_001.fastq.gz 4043813321 FASTQ S14_L004_R2 unaligned CPTAC3 f7f37873-fe64-4257-8d45-c77aa913b746 5ffa67307f39209ba7885bea7bd723dc {"aliquot_tag": "ALQ_a0760a1b", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04916.RNA-Seq.S2_L001_R1.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R1_001.fastq.gz 4247172933 FASTQ S2_L001_R1 unaligned CPTAC3 b67de956-fe78-45f8-8813-35042c29c81b 1623dc8cad427495ded52e7229f2c9d8 {"aliquot_tag": "ALQ_55f6acdb", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.RNA-Seq.S2_L001_R2.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R2_001.fastq.gz 4773647924 FASTQ S2_L001_R2 unaligned CPTAC3 9370ba3d-5ec0-49b8-abc8-2efa8fa4644f aed9037ead72a286a74a1e2b78831212 {"aliquot_tag": "ALQ_55f6acdb", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.RNA-Seq.transcriptome.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.transcriptome.gdc_realn.bam 11032579609 BAM transcriptome harmonized CPTAC3 c81118bb-5c33-4fac-a41c-2eed3d9988aa f3dc5cd0dcceadcb43dad536c77e0790 {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.RNA-Seq.transcriptome.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.transcriptome.gdc_realn.bam 11133351417 BAM transcriptome harmonized CPTAC3 2e194f18-7c9d-4645-b916-3bce8c405e1a e3ba495520afd866651e44c0769bfca0 {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor"} -C3L-04916.WGS.N C3L-04916 LSCC WGS blood_normal CPT0253950002 CPT0253950002.WholeGenome.RP-2158.bam 27211685550 BAM aligned CPTAC3 64f33867-6b66-4106-b028-84200d62ffe3 d40c95c7b24f1e5aa0d4b1d077264f66 {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal"} -C3L-04916.WGS.N.hg38 C3L-04916 LSCC WGS blood_normal CPT0253950002 19045df1-920b-4394-9a2c-7efac1afdbce_wgs_gdc_realn.bam 83404250762 BAM harmonized CPTAC3 0c3c18a9-693d-4d7c-811e-43a69ccb9861 6219f8552a4819e0e11e6623780b8b6e {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal"} -C3L-04916.WGS.T C3L-04916 LSCC WGS tumor CPT0253820006 CPT0253820006.WholeGenome.RP-2158.bam 23192852802 BAM aligned CPTAC3 a31bba1d-0dd8-4405-a947-63f8798dad8e 16b04c6b2a69d0b9e1df2d89638ddbf5 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor"} -C3L-04916.WGS.T.hg38 C3L-04916 LSCC WGS tumor CPT0253820006 fd157e5a-efff-4dbc-9fcb-41a6355a4016_wgs_gdc_realn.bam 69638483654 BAM harmonized CPTAC3 d7cd46cd-09c5-4e20-9e40-bc70e8caaf92 a2dcba242fd272fbf54e4ef9c718bddc {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor"} -C3L-04916.WXS.A C3L-04916 LSCC WXS tissue_normal CPT0253860006 CPT0253860006.WholeExome.RP-1303.bam 23372757396 BAM aligned CPTAC3 69362b88-851a-412a-8687-5263ed8b44d8 2e6415c00a19c347a83184ed930f059b {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.WXS.A.hg38 C3L-04916 LSCC WXS tissue_normal CPT0253860006 46fa63f7-e7ea-4fb4-ab4b-864ad6321c04_wxs_gdc_realn.bam 32214037111 BAM harmonized CPTAC3 36cbd5d4-c79c-4b32-ba2f-ef99d43ece92 819516e1316b5b666b91a126d2d4fbe9 {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04916.WXS.N C3L-04916 LSCC WXS blood_normal CPT0253950002 CPT0253950002.WholeExome.RP-1303.bam 28394706546 BAM aligned CPTAC3 a74f2836-c0f0-4731-af06-0aea9298e166 4138e4a9494f341ed263a2e172a16601 {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal"} -C3L-04916.WXS.N.hg38 C3L-04916 LSCC WXS blood_normal CPT0253950002 19045df1-920b-4394-9a2c-7efac1afdbce_wxs_gdc_realn.bam 38762395045 BAM harmonized CPTAC3 c3b89dbf-4970-49de-830f-8fd51091bdee 7205f65f059f0ad90bb631ec8e3a8fce {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal"} -C3L-04916.WXS.T C3L-04916 LSCC WXS tumor CPT0253820006 CPT0253820006.WholeExome.RP-1303.bam 23094598277 BAM aligned CPTAC3 1fcbdeb9-8e3b-4179-a100-fdf28e89906c 9f3e697681b66a2522c2559b8922b06c {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor"} -C3L-04916.WXS.T.hg38 C3L-04916 LSCC WXS tumor CPT0253820006 fd157e5a-efff-4dbc-9fcb-41a6355a4016_wxs_gdc_realn.bam 31464608931 BAM harmonized CPTAC3 eaf60ce5-1c03-4e78-893c-e6f9eb396715 3a0dc3474c18940ab7b3409d522d62a2 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor"} -C3L-04921.MethArray.Green.A C3L-04921 LSCC Methylation_Array tissue_normal CPT0252770009 204367470131_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 a67ce6e7-261f-425c-b992-bebf72aaca64 25e3d98d48f4f15d373e7abea96775cc {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.MethArray.Green.T C3L-04921 LSCC Methylation_Array tumor CPT0252750006 204372030011_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 11530570-cad9-4d22-8ae9-953597ab52b9 3d45600c2d2b28353765eda07c61f08d {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor"} -C3L-04921.MethArray.Red.A C3L-04921 LSCC Methylation_Array tissue_normal CPT0252770009 204367470131_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 02160c12-5bbd-45a7-b774-360d980df290 0e1b37758cd380602091335f4754588d {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.MethArray.Red.T C3L-04921 LSCC Methylation_Array tumor CPT0252750006 204372030011_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 05413ff9-be16-4ca3-bfa8-5507e3590c39 d0391761d62cb8f07d7142aafb76d300 {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor"} -C3L-04921.miRNA-Seq.A.hg38 C3L-04921 LSCC miRNA-Seq tissue_normal CPT0252770006 55c05fa7-1b33-4ce6-afbe-dfde2fe7d6f5_mirnaseq_gdc_realn.bam 202404036 BAM harmonized CPTAC3 16058bfc-17bd-417b-a01a-594c1daad293 97a549f2c9f708db677e4c9e7beb324c {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.miRNA-Seq.S16_L001_R1.T C3L-04921 LSCC miRNA-Seq tumor CPT0252750013 200325_UNC31-K00269_0272_AHHC2NBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 168810704 BAM S16_L001_R1 unaligned CPTAC3 2e31a7c2-f5ce-465b-adb5-61bb7cfce6ff e11e1095220d27564356c1fc5437d249 {"aliquot_tag": "ALQ_bcb9b735", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04921.miRNA-Seq.S40_L006_R1.A C3L-04921 LSCC miRNA-Seq tissue_normal CPT0252770006 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTCAGA_S40_L006_R1_001.unaln.bam 179834472 BAM S40_L006_R1 unaligned CPTAC3 4b248c48-d029-473e-bf14-a93efe4a7eb7 881171039011fe6046c558c23839c1db {"aliquot_tag": "ALQ_af08219b", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.miRNA-Seq.T.hg38 C3L-04921 LSCC miRNA-Seq tumor CPT0252750013 d736bee0-7cf3-4d03-a840-3e8f35074d67_mirnaseq_gdc_realn.bam 183859694 BAM harmonized CPTAC3 678b5cc6-0d79-49f4-8f52-e15b81f9aedf 8df9e3f2bcf12707d65fc9867e26014b {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor"} -C3L-04921.RNA-Seq.chimeric.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.chimeric.gdc_realn.bam 34824789 BAM chimeric harmonized CPTAC3 c0eacd83-87e7-4559-8970-6fa3b14d38b9 39e604750dbc2c4720641f76f3ffeab9 {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.RNA-Seq.chimeric.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.chimeric.gdc_realn.bam 68738103 BAM chimeric harmonized CPTAC3 8111320a-dc1a-495b-a800-025a8c966cf4 8605f3fa64a9feac9b02c47bef8f419e {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor"} -C3L-04921.RNA-Seq.genomic.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.genomic.gdc_realn.bam 9277471277 BAM genomic harmonized CPTAC3 d0cf93b0-730f-4d3c-9617-c2cea29702ec d1cb6a647a72204a5622d65a73acdff3 {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.RNA-Seq.genomic.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.genomic.gdc_realn.bam 7619258910 BAM genomic harmonized CPTAC3 c0d36be2-2d39-4c6f-a5bf-5ff4d30f2497 b3dcf0eda013e3e449810e8716676fff {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor"} -C3L-04921.RNA-Seq.S21_L006_R1.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R1_001.fastq.gz 4162750082 FASTQ S21_L006_R1 unaligned CPTAC3 a90e194a-4b94-4312-a3f4-69ac0c520e90 199b6300fb45c0a4edc93e6a6c9ba109 {"aliquot_tag": "ALQ_af08219b", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.RNA-Seq.S21_L006_R2.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R2_001.fastq.gz 5149041292 FASTQ S21_L006_R2 unaligned CPTAC3 242152e6-2216-45db-a8a3-df068b26d22f 27ce5bebfba9323318cd1651680c35d4 {"aliquot_tag": "ALQ_af08219b", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.RNA-Seq.S24_L006_R1.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 3672634106 FASTQ S24_L006_R1 unaligned CPTAC3 4ed05607-7dec-4e7e-86c3-01b85e9c96e4 c487a79b13192a7ac62347d46feaa249 {"aliquot_tag": "ALQ_bcb9b735", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04921.RNA-Seq.S24_L006_R2.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 3857705611 FASTQ S24_L006_R2 unaligned CPTAC3 079c546b-c03b-4638-8cea-0d3fb3b6326c ba02468840987eaf2c07ce223970289f {"aliquot_tag": "ALQ_bcb9b735", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04921.RNA-Seq.transcriptome.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.transcriptome.gdc_realn.bam 10875089529 BAM transcriptome harmonized CPTAC3 36371255-7cbc-4811-9d5e-53125d8daee5 219862b061c904f73d15611e5cecb0d3 {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.RNA-Seq.transcriptome.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.transcriptome.gdc_realn.bam 10123207158 BAM transcriptome harmonized CPTAC3 703241da-ea9d-4c77-ae25-254873e5e979 140cdda81b16b365df0b8ec95746c729 {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor"} -C3L-04921.WGS.N C3L-04921 LSCC WGS blood_normal CPT0252880002 CPT0252880002.WholeGenome.RP-2158.bam 21698223377 BAM aligned CPTAC3 5e234217-beb3-4049-a5de-019d6994afa0 6b5c9c2ac5023985670ce7c2acc34f05 {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal"} -C3L-04921.WGS.N.hg38 C3L-04921 LSCC WGS blood_normal CPT0252880002 bc1c32a3-372a-45bf-a6bd-1374ff7922fb_wgs_gdc_realn.bam 64859253722 BAM harmonized CPTAC3 e666531d-597f-4ea1-8ebb-96f4d3cc4ade e91b39cfbdbb357d059b8cd51b14c15a {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal"} -C3L-04921.WGS.T C3L-04921 LSCC WGS tumor CPT0252750006 CPT0252750006.WholeGenome.RP-2158.bam 29474446084 BAM aligned CPTAC3 2a0ab715-a72e-4dae-8806-807f0b13f613 9a69942825ad93b93bd1547d5fe664c2 {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor"} -C3L-04921.WGS.T.hg38 C3L-04921 LSCC WGS tumor CPT0252750006 2437fa18-5a93-4db0-b3ae-08396dc784d9_wgs_gdc_realn.bam 87060632436 BAM harmonized CPTAC3 4344ed3f-54ff-422a-8362-6ecbc704951b 435030b366c0e2919c0b65bfec96076f {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor"} -C3L-04921.WXS.A C3L-04921 LSCC WXS tissue_normal CPT0252770009 CPT0252770009.WholeExome.RP-1303.bam 25680271224 BAM aligned CPTAC3 98c21908-2f64-4fbc-8d5a-1a9b7b2dc29d 43d65b341e14362176a63c07a4d74e86 {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.WXS.A.hg38 C3L-04921 LSCC WXS tissue_normal CPT0252770009 ed274b8c-b612-4f24-acb4-5e1f928db596_wxs_gdc_realn.bam 35308060620 BAM harmonized CPTAC3 55e43148-2e46-4b6d-9d22-b10aa1ef1ebd ab282814927dd166ebbda6c02e27a84e {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04921.WXS.N C3L-04921 LSCC WXS blood_normal CPT0252880002 CPT0252880002.WholeExome.RP-1303.bam 26037100352 BAM aligned CPTAC3 ac2cfa3b-7d1f-4123-bd04-2aac87168bbd 4e3fb07f10cb68904707aa94acd0f172 {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal"} -C3L-04921.WXS.N.hg38 C3L-04921 LSCC WXS blood_normal CPT0252880002 bc1c32a3-372a-45bf-a6bd-1374ff7922fb_wxs_gdc_realn.bam 35429165771 BAM harmonized CPTAC3 7f6409db-1a09-4284-9354-e412f210c7e7 dd9b0bdc3b1536d8405eeba879d03e05 {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal"} -C3L-04921.WXS.T C3L-04921 LSCC WXS tumor CPT0252750006 CPT0252750006.WholeExome.RP-1303.bam 34993491158 BAM aligned CPTAC3 6876b181-7c0d-42c9-a45d-2680b9dc61fd 05cca6868cff270745b781fc47b1c876 {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor"} -C3L-04921.WXS.T.hg38 C3L-04921 LSCC WXS tumor CPT0252750006 2437fa18-5a93-4db0-b3ae-08396dc784d9_wxs_gdc_realn.bam 48592902174 BAM harmonized CPTAC3 2393913f-d773-4759-8438-eeef2c2b87a8 0d1a1bc2d9fd4aad9018f87554a5917b {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor"} -C3L-04922.MethArray.Green.A C3L-04922 LSCC Methylation_Array tissue_normal CPT0254030006 204367490082_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e38dd1f8-4439-4387-ab71-28eda4c8eaeb b0404b22a8539a0ca198f279a3ea9a98 {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.MethArray.Green.T C3L-04922 LSCC Methylation_Array tumor CPT0254010006 204367490093_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3134e037-739a-43ec-a261-4260c8031321 9dae13d58916a96766b5159868559098 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor"} -C3L-04922.MethArray.Red.A C3L-04922 LSCC Methylation_Array tissue_normal CPT0254030006 204367490082_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 1418ae93-39ad-48c5-b42d-06f5568c6b27 a0763b7beb352032cd5c9c7242448f0c {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.MethArray.Red.T C3L-04922 LSCC Methylation_Array tumor CPT0254010006 204367490093_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 0234b349-6d84-4c8b-8879-e853bed8c32a 81ddc5d7cc0e1bf13ba27d1c0ea287e3 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor"} -C3L-04922.miRNA-Seq.A.hg38 C3L-04922 LSCC miRNA-Seq tissue_normal CPT0254030009 eaa5d6c2-d828-470a-887e-0082f7752891_mirnaseq_gdc_realn.bam 295487736 BAM harmonized CPTAC3 6c6be620-75b8-4c03-b2d0-4d5bf90cd4ad 6ee569b15a9837187f9ed1b4386a7016 {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.miRNA-Seq.S31_L007_R1.T C3L-04922 LSCC miRNA-Seq tumor CPT0254010009 200224_UNC31-K00269_0267_AHC722BBXY_CACGAT_S31_L007_R1_001.unaln.bam 257275759 BAM S31_L007_R1 unaligned CPTAC3 41a2e164-6e29-4370-a814-a85950523016 f34c293cd35f95814b6511a6d5ce0d06 {"aliquot_tag": "ALQ_ce22cc28", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04922.miRNA-Seq.S9_L007_R1.A C3L-04922 LSCC miRNA-Seq tissue_normal CPT0254030009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGATGT_S9_L007_R1_001.unaln.bam 264992137 BAM S9_L007_R1 unaligned CPTAC3 cecc7fb7-152e-4f3d-a48d-93c2532beafa e997b479d644c6e41681d27121e8d297 {"aliquot_tag": "ALQ_b4e29f48", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.miRNA-Seq.T.hg38 C3L-04922 LSCC miRNA-Seq tumor CPT0254010009 6bc88405-3f2d-4a2f-b407-b320cdf48cec_mirnaseq_gdc_realn.bam 286934142 BAM harmonized CPTAC3 6e51edd3-7e9b-4358-97f9-619b662c0fa0 19e96e5a5870cee2248b3b402134000a {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor"} -C3L-04922.RNA-Seq.chimeric.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.chimeric.gdc_realn.bam 94954220 BAM chimeric harmonized CPTAC3 3214a79b-0bbd-47ae-ad2f-0ce2df6ee7de 74d09ddf9d2ffd17c80b01c7cb9f9983 {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.RNA-Seq.chimeric.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.chimeric.gdc_realn.bam 32128014 BAM chimeric harmonized CPTAC3 6b3a26db-5cb4-4a31-b59f-308a29b89e0a b78f31a548827fe1925732fa6c186d8a {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor"} -C3L-04922.RNA-Seq.genomic.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.genomic.gdc_realn.bam 8462284525 BAM genomic harmonized CPTAC3 07db0c52-a825-48fc-bbc8-9e4ec205f684 18550540a7369102c1f3075d03a681ff {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.RNA-Seq.genomic.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.genomic.gdc_realn.bam 7672123946 BAM genomic harmonized CPTAC3 8eeb5f5e-e039-465a-9db1-a50c4683b67a fa909e7922fc6ec56890a9da4ed293f1 {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor"} -C3L-04922.RNA-Seq.S15_L004_R1.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3578547939 FASTQ S15_L004_R1 unaligned CPTAC3 47f8b8c4-4dc0-41d8-a0bc-b943d8ecaaed 83477b0ca4d550518e61872e53096262 {"aliquot_tag": "ALQ_ce22cc28", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-04922.RNA-Seq.S15_L004_R2.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 3904371477 FASTQ S15_L004_R2 unaligned CPTAC3 0ab6b521-f980-4560-8c83-39e7d958f5ba d224f663d144f836be733959637b0393 {"aliquot_tag": "ALQ_ce22cc28", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-04922.RNA-Seq.S3_L001_R1.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R1_001.fastq.gz 3975133314 FASTQ S3_L001_R1 unaligned CPTAC3 88c980d2-f9dd-4f81-bb9f-6907d229b055 af91ba8a17cf26af322578586d367cb1 {"aliquot_tag": "ALQ_b4e29f48", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.RNA-Seq.S3_L001_R2.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R2_001.fastq.gz 4482970352 FASTQ S3_L001_R2 unaligned CPTAC3 80027f20-5747-4f1a-84c7-efe9ef7d3bfd c6ab63e37e2b48b74cbe3321e3c95eba {"aliquot_tag": "ALQ_b4e29f48", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.RNA-Seq.transcriptome.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.transcriptome.gdc_realn.bam 10122572278 BAM transcriptome harmonized CPTAC3 decda37d-69c9-40c2-82bd-144eed2b4e77 aa7679da65b3a4210789a939784ba2af {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.RNA-Seq.transcriptome.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.transcriptome.gdc_realn.bam 10644879199 BAM transcriptome harmonized CPTAC3 2bbb657a-67ab-4792-aa35-a049980e7607 16ebd20c96babc714256617c9e0a6e5f {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor"} -C3L-04922.WGS.N C3L-04922 LSCC WGS blood_normal CPT0254130002 CPT0254130002.WholeGenome.RP-2158.bam 27961183031 BAM aligned CPTAC3 414cfcca-07d1-4f9f-b9b4-a2d182329812 5c958d6a855f85463e7dd29a3c419582 {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04922.WGS.N.hg38 C3L-04922 LSCC WGS blood_normal CPT0254130002 23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wgs_gdc_realn.bam 84359189370 BAM harmonized CPTAC3 23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5 881a0ea44ee61a0dbb869c52f76560f5 {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04922.WGS.T C3L-04922 LSCC WGS tumor CPT0254010006 CPT0254010006.WholeGenome.RP-2158.bam 27440633992 BAM aligned CPTAC3 fb552bf8-b4b5-44e6-a542-8b106c32a66f 5bdf959641b5c574f7c8574d3254370f {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor"} -C3L-04922.WGS.T.hg38 C3L-04922 LSCC WGS tumor CPT0254010006 d0cab13b-f2df-4901-97cd-7a8556661410_wgs_gdc_realn.bam 80665752293 BAM harmonized CPTAC3 d3898ded-3f45-4fd3-bb20-c7a9e84aebf6 a5ac06b8a0581312d6351840aea32994 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor"} -C3L-04922.WXS.A C3L-04922 LSCC WXS tissue_normal CPT0254030006 CPT0254030006.WholeExome.RP-1303.bam 22611964465 BAM aligned CPTAC3 54735bc5-dec0-4ef4-af07-24db22fb397f 97cc42a0bc1f2d50bf1c0492a9e3f8b1 {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.WXS.A.hg38 C3L-04922 LSCC WXS tissue_normal CPT0254030006 e0d1ae7e-513c-4963-ae0d-7011ea5a4920_wxs_gdc_realn.bam 30528625649 BAM harmonized CPTAC3 171ac5ac-d0cf-42de-80c2-9a272b993431 41e3c552468119aae234190cd187197d {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal"} -C3L-04922.WXS.N C3L-04922 LSCC WXS blood_normal CPT0254130002 CPT0254130002.WholeExome.RP-1303.bam 26999676590 BAM aligned CPTAC3 502a8081-e150-4590-be4d-226fc5e6b13d 888c11f46898e2812cb87b33584f876e {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04922.WXS.N.hg38 C3L-04922 LSCC WXS blood_normal CPT0254130002 23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wxs_gdc_realn.bam 36992373803 BAM harmonized CPTAC3 72c93155-cbfc-4453-9c3f-05b04b32935d 55b115f9a688d9e30be30785d38545e4 {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal"} -C3L-04922.WXS.T C3L-04922 LSCC WXS tumor CPT0254010006 CPT0254010006.WholeExome.RP-1303.bam 21149593006 BAM aligned CPTAC3 5ee82b78-3b25-43b9-934f-f09b83b82c2b abc4ec87ab0f0e94ee9da2bdef2b2058 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor"} -C3L-04922.WXS.T.hg38 C3L-04922 LSCC WXS tumor CPT0254010006 d0cab13b-f2df-4901-97cd-7a8556661410_wxs_gdc_realn.bam 29686913321 BAM harmonized CPTAC3 a12611f3-1505-4479-b57a-961a4ed7b069 b6d0be0a3bba92b637d381ce10df7e69 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor"} -C3L-04971.MethArray.Green.Tpb C3L-04971 AML Methylation_Array tumor_peripheral_blood CPT0339330002 205987780101_R05C01_Grn.idat 13677887 IDAT Green NA CPTAC3 d91ec359-84fd-4dc6-8f19-4856e62dd40a c8303bda4e4fe1508361bfab9c89757f {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.MethArray.Red.Tpb C3L-04971 AML Methylation_Array tumor_peripheral_blood CPT0339330002 205987780101_R05C01_Red.idat 13677887 IDAT Red NA CPTAC3 5c0e76d6-072a-4936-accd-6b6c8c1e3039 79f900994aa6e43f96ce28ba887bdec6 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.miRNA-Seq.S19_L001_R1.Tpb C3L-04971 AML miRNA-Seq tumor_peripheral_blood CPT0339340002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCCCGA_S19_L001_R1_001.unaln.bam 241802022 BAM S19_L001_R1 unaligned CPTAC3 3c1fae86-3aa3-4cc6-89d3-1def56b9c932 123fc7250e667798782131fc2f0e16b0 {"aliquot_tag": "ALQ_a747947a", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.miRNA-Seq.Tpb.hg38 C3L-04971 AML miRNA-Seq tumor_peripheral_blood CPT0339340002 0b45deac-fcc3-4fa1-9f1f-a845307e57d9_mirnaseq_gdc_realn.bam 259184628 BAM harmonized CPTAC3 fa5e86ae-3ca0-4199-87a9-abdbd9c12975 405747118c01e05036a89769f6c0d6ab {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.RNA-Seq.chimeric.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.chimeric.gdc_realn.bam 618559213 BAM chimeric harmonized CPTAC3 e594709a-947d-4563-a0de-b933597ee5aa 690b424d79adaba770751cfd2b6db51b {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.RNA-Seq.genomic.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.genomic.gdc_realn.bam 9739276635 BAM genomic harmonized CPTAC3 60b3e86c-c959-4c54-9923-c81ce857a58c 0d57cff883b9fe457eb7aeb08fb0de83 {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.RNA-Seq.S21_L006_R1.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 4148351491 FASTQ S21_L006_R1 unaligned CPTAC3 d99c1f34-fb81-4eb9-a7cd-6633b8503c48 07d98f8b7cd9d0b5fd9eeb8b02aeffd7 {"aliquot_tag": "ALQ_a747947a", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.RNA-Seq.S21_L006_R2.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 4540860364 FASTQ S21_L006_R2 unaligned CPTAC3 b75f533d-4b00-472f-840b-75cd60a4db83 249cfc89d3ada95052b2a46ac0eec5ee {"aliquot_tag": "ALQ_a747947a", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.RNA-Seq.transcriptome.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.transcriptome.gdc_realn.bam 7496675086 BAM transcriptome harmonized CPTAC3 81c7e221-82bc-4c63-8e16-ec184010b494 3e32481a72f9b92059d9c0289372c655 {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.WGS.Tpb C3L-04971 AML WGS tumor_peripheral_blood CPT0339330002 CPT0339330002.WholeGenome.RP-2158.bam 45545990165 BAM aligned CPTAC3 85b80bc0-77af-412c-80a7-e6044d650596 2a76cbb77d0fda0b54105980e656e7b1 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.WGS.Tpb.hg38 C3L-04971 AML WGS tumor_peripheral_blood CPT0339330002 d5f7901c-319d-49a5-b8f2-4053c2ba66dd_wgs_gdc_realn.bam 396291947475 BAM harmonized CPTAC3 6119cb98-af0c-48a7-836b-2751bfee338c 66ed236c55d0b8c9e708f4d988d390c6 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.WXS.Nbc C3L-04971 AML WXS buccal_normal CPT0343350004 CPT0343350004.WholeExome.RP-1303.bam 28793076892 BAM aligned CPTAC3 a161b7c2-54fc-45c6-8b80-1643628529cc 9c2b31e5fc40a82fd863b505c0789fe3 {"aliquot_tag": "ALQ_ddf14ea8", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04971.WXS.Nbc.hg38 C3L-04971 AML WXS buccal_normal CPT0343350004 43f033f3-42d5-45ea-b9d2-4e9fb45232c4_wxs_gdc_realn.bam 40092493994 BAM harmonized CPTAC3 8af4c3fd-04fd-4e76-bfee-67bb4a62d215 c5d26247def12b3509219b7ac8e19ba3 {"aliquot_tag": "ALQ_ddf14ea8", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04971.WXS.Tpb C3L-04971 AML WXS tumor_peripheral_blood CPT0339330002 CPT0339330002.WholeExome.RP-1303.bam 34364846930 BAM aligned CPTAC3 b997890d-3f4f-42c1-b004-277e5a49c9f0 b877f3a4efdf075848c772aadfbfac67 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04971.WXS.Tpb.hg38 C3L-04971 AML WXS tumor_peripheral_blood CPT0339330002 d5f7901c-319d-49a5-b8f2-4053c2ba66dd_wxs_gdc_realn.bam 48003722608 BAM harmonized CPTAC3 7b8cbab0-baaf-420c-8328-9ed0c99b09ea bb29a64a8d9b27518e83909390d74fee {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.MethArray.Green.Tpb C3L-04976 AML Methylation_Array tumor_peripheral_blood CPT0340440002 205987780101_R04C01_Grn.idat 13677888 IDAT Green NA CPTAC3 8b487bc9-bb65-4c0a-bef0-9e115ce26b02 11d4467948c09ebd66e171fa63254562 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.MethArray.Red.Tpb C3L-04976 AML Methylation_Array tumor_peripheral_blood CPT0340440002 205987780101_R04C01_Red.idat 13677888 IDAT Red NA CPTAC3 20abb0c4-846b-4d2b-bc58-05d7045482a6 c03e89eef804ba16a57babac4c5c572a {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.miRNA-Seq.S9_L004_R1.Tpb C3L-04976 AML miRNA-Seq tumor_peripheral_blood CPT0340450002 220505_UNC32-K00270_0319_AHMV2KBBXY_CATGGC_S9_L004_R1_001.unaln.bam 197974102 BAM S9_L004_R1 unaligned CPTAC3 4bc495d3-921d-44ad-9cc2-607be6db51d0 1c6e3d6baff267b053bc64bc29581d33 {"aliquot_tag": "ALQ_187fc1b8", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.miRNA-Seq.Tpb.hg38 C3L-04976 AML miRNA-Seq tumor_peripheral_blood CPT0340450002 d6156a78-b7e4-4ff9-8e27-62251b99c795_mirnaseq_gdc_realn.bam 216913332 BAM harmonized CPTAC3 ff0202ec-df3c-4a78-8840-0d1c76adcf6d 4d3627ffb31caa8d4bf445acc5f28f4f {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.RNA-Seq.chimeric.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.chimeric.gdc_realn.bam 438798821 BAM chimeric harmonized CPTAC3 ff36c299-c0fc-4f2e-a1b0-ed692460a4d0 2ab1eb2a1b7b42405e883bab30394064 {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.RNA-Seq.genomic.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.genomic.gdc_realn.bam 7734574249 BAM genomic harmonized CPTAC3 cf590f02-6863-4801-99e6-8f7f57f8eeec 9c39b9c1c19ab22b73d555ac1cd56d81 {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.RNA-Seq.S27_L007_R1.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R1_001.fastq.gz 3833175431 FASTQ S27_L007_R1 unaligned CPTAC3 b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2 12397874d652455e4c389a6b820491d9 {"aliquot_tag": "ALQ_187fc1b8", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.RNA-Seq.S27_L007_R2.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R2_001.fastq.gz 4120847331 FASTQ S27_L007_R2 unaligned CPTAC3 05cced7e-a63b-4b94-a784-1c918fb8fa37 e3c4042158cb0ae18db814e8d46bae9f {"aliquot_tag": "ALQ_187fc1b8", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.RNA-Seq.transcriptome.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.transcriptome.gdc_realn.bam 9202305720 BAM transcriptome harmonized CPTAC3 8646852d-f933-4eae-a230-ecd46b73c15e 5e6b938d3dfc94f4e13ab9bc2fff6ee1 {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.WGS.Tpb C3L-04976 AML WGS tumor_peripheral_blood CPT0340440002 CPT0340440002.WholeGenome.RP-2158.bam 48842235022 BAM aligned CPTAC3 d738a572-2f8d-458d-8e89-f96782ff4550 6ee412053e29bb290a3e259c1c599a6d {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.WGS.Tpb.hg38 C3L-04976 AML WGS tumor_peripheral_blood CPT0340440002 688a7f1f-fd4e-48b0-8f6b-efa006ad465a_wgs_gdc_realn.bam 147881432523 BAM harmonized CPTAC3 21cb1a80-0867-4877-8198-f3c83b1710cb 706f515abb5c7b4551189e5fe4893676 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.WXS.Nbc C3L-04976 AML WXS buccal_normal CPT0340410004 CPT0340410004.WholeExome.RP-1303.bam 18430426422 BAM aligned CPTAC3 55a21e1d-93ba-4396-ac8b-b732c9e7bd18 d7186dd855d6471eb2093fb2e22a303a {"aliquot_tag": "ALQ_49cc24d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04976.WXS.Nbc.hg38 C3L-04976 AML WXS buccal_normal CPT0340410004 b3d4bb03-7ba4-4dcf-8598-4359592394a2_wxs_gdc_realn.bam 25647276561 BAM harmonized CPTAC3 c7f73644-7904-417e-a93c-ce6d8158663c 8748c21c2de7e7f29a2317dd3ed12eb6 {"aliquot_tag": "ALQ_49cc24d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-04976.WXS.Tpb C3L-04976 AML WXS tumor_peripheral_blood CPT0340440002 CPT0340440002.WholeExome.RP-1303.bam 27947904385 BAM aligned CPTAC3 41225e8c-849b-4ed4-8890-51871a404702 35418eecc6fee933bd1a1d58ebcd6063 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-04976.WXS.Tpb.hg38 C3L-04976 AML WXS tumor_peripheral_blood CPT0340440002 688a7f1f-fd4e-48b0-8f6b-efa006ad465a_wxs_gdc_realn.bam 38770748836 BAM harmonized CPTAC3 7a88bcb3-8db3-4533-a9ff-45f6c13a6a73 2bfa50239ca30893e18f7095e7e00587 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05020.MethArray.Green.A C3L-05020 LSCC Methylation_Array tissue_normal CPT0262510006 204367490084_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a921e42c-1f0e-4c21-9a76-34ca2d235422 4b86be7e157ed4dce027acd6ce132251 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.MethArray.Green.T C3L-05020 LSCC Methylation_Array tumor CPT0262460006 204372030074_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 77f14ecd-ed1e-41af-b306-e9d589865aba cf59448bbe5a213f000f6cea2e7c2257 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor"} -C3L-05020.MethArray.Red.A C3L-05020 LSCC Methylation_Array tissue_normal CPT0262510006 204367490084_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 1e3bf5c0-86ca-4133-b5ec-f335899c6b76 b76920e92379d6a83ce976102f03d636 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.MethArray.Red.T C3L-05020 LSCC Methylation_Array tumor CPT0262460006 204372030074_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 69fbc2e0-00bf-4bd6-ac7b-fb47cb1af225 be8280b630cec377995015cd121cae44 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor"} -C3L-05020.miRNA-Seq.A.hg38 C3L-05020 LSCC miRNA-Seq tissue_normal CPT0262510009 02449727-14fd-4a39-8708-c8022e46721e_mirnaseq_gdc_realn.bam 274033428 BAM harmonized CPTAC3 e89744a0-b737-43fc-8e8b-7df52dbca536 4440dbe049845a173d25ac2ecdb4bb9e {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.miRNA-Seq.S15_L008_R1.T C3L-05020 LSCC miRNA-Seq tumor CPT0262460009 200224_UNC31-K00269_0267_AHC722BBXY_ATGTCA_S15_L008_R1_001.unaln.bam 245912467 BAM S15_L008_R1 unaligned CPTAC3 b208fcf2-0c9d-4e9f-a140-c00c3b7d41f3 0ca1c6d89998bd4ae64b1bb8a6bc62f5 {"aliquot_tag": "ALQ_acc60f7", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05020.miRNA-Seq.S24_L005_R1.A C3L-05020 LSCC miRNA-Seq tissue_normal CPT0262510009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TTAGGC_S24_L005_R1_001.unaln.bam 244487184 BAM S24_L005_R1 unaligned CPTAC3 6879950b-772f-4394-a216-49c0882c8bdb a35f3040a0585c93ed7d6f70b9b8615a {"aliquot_tag": "ALQ_73b06f42", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.miRNA-Seq.T.hg38 C3L-05020 LSCC miRNA-Seq tumor CPT0262460009 a55ce9af-0f05-4d9e-b825-bf6e6168e05f_mirnaseq_gdc_realn.bam 268517353 BAM harmonized CPTAC3 3739804e-62af-4ba0-b474-d93def2206f9 17ee24d5e53a71544356021a664dad70 {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor"} -C3L-05020.RNA-Seq.chimeric.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.chimeric.gdc_realn.bam 25787460 BAM chimeric harmonized CPTAC3 b165aab7-2082-47b5-a751-532d5580293f 8d53f7f048a2136885cc3a35978b8aa6 {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.RNA-Seq.chimeric.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.chimeric.gdc_realn.bam 31046488 BAM chimeric harmonized CPTAC3 e60ea571-c05a-4f12-bee5-6dc3a339fd96 3be5013f05fd382619787d441596205e {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor"} -C3L-05020.RNA-Seq.genomic.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.genomic.gdc_realn.bam 6782961881 BAM genomic harmonized CPTAC3 3a6ec90f-6e44-43bf-bbb1-a6f2b0dadba0 bf15383ea9283d295ab724d7118d4e8b {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.RNA-Seq.genomic.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.genomic.gdc_realn.bam 6986430641 BAM genomic harmonized CPTAC3 857f53b8-1fd4-4350-8988-2c1eb792a1c0 ca9aa679a48522e11062359f96513ffb {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor"} -C3L-05020.RNA-Seq.S15_L004_R1.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R1_001.fastq.gz 3458601880 FASTQ S15_L004_R1 unaligned CPTAC3 f56cde44-a302-4e05-af29-99b841a4c531 efe0682d3738cdf0e1d10dbff797f030 {"aliquot_tag": "ALQ_acc60f7", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05020.RNA-Seq.S15_L004_R2.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R2_001.fastq.gz 3703763631 FASTQ S15_L004_R2 unaligned CPTAC3 b3c3cc55-f3ce-4488-9edd-0e3451544107 1ba52d5c26c42623e3e670b3e51de1d3 {"aliquot_tag": "ALQ_acc60f7", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05020.RNA-Seq.S3_L005_R1.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R1_001.fastq.gz 3405898536 FASTQ S3_L005_R1 unaligned CPTAC3 f5ab75f7-4feb-46d2-ac3e-52984334b00e 35f8b2d0af872f72a2c41c4c9686d309 {"aliquot_tag": "ALQ_73b06f42", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.RNA-Seq.S3_L005_R2.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R2_001.fastq.gz 3610606327 FASTQ S3_L005_R2 unaligned CPTAC3 9d873937-00f9-4770-8b8e-71354acc37bd b708013e51a9c2e907308ac88ab2d832 {"aliquot_tag": "ALQ_73b06f42", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.RNA-Seq.transcriptome.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.transcriptome.gdc_realn.bam 8492217139 BAM transcriptome harmonized CPTAC3 f96397e2-efd6-453a-a158-2372490c11bf 343217b673ad92a7a917f6c08dbb054f {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.RNA-Seq.transcriptome.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.transcriptome.gdc_realn.bam 9797103851 BAM transcriptome harmonized CPTAC3 b2a6f468-26c6-4eac-8a19-c3ba38086233 ceb639f7d7132f28d297f0590a3afcb9 {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor"} -C3L-05020.WGS.N C3L-05020 LSCC WGS blood_normal CPT0263780002 CPT0263780002.WholeGenome.RP-2158.bam 26323199236 BAM aligned CPTAC3 664050ec-fee9-42dc-8903-5fe8c6b6a1d8 8dc7a90590477bfa4ff54f863074de96 {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05020.WGS.N.hg38 C3L-05020 LSCC WGS blood_normal CPT0263780002 9a5e7de2-a3e2-4837-b944-c4f71db5be2f_wgs_gdc_realn.bam 77638470623 BAM harmonized CPTAC3 82895603-0b17-4f96-b192-987c98e5be51 18656630f9f000e90070deb7a8472cb9 {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05020.WGS.T C3L-05020 LSCC WGS tumor CPT0262460006 CPT0262460006.WholeGenome.RP-2158.bam 25718538719 BAM aligned CPTAC3 048fff88-b8b1-43fd-9df5-0c9b13db65fe f470042fc7cd3ee5efcfe1c783b4d61c {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor"} -C3L-05020.WGS.T.hg38 C3L-05020 LSCC WGS tumor CPT0262460006 816c3a90-a426-4ad7-947b-b338d7b7d45d_wgs_gdc_realn.bam 76737362255 BAM harmonized CPTAC3 701a8e2f-d44a-4890-b736-125d2e8792ee 47b2da64d1a744189ddc88aa77dae8fd {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor"} -C3L-05020.WXS.A C3L-05020 LSCC WXS tissue_normal CPT0262510006 CPT0262510006.WholeExome.RP-1303.bam 20180583695 BAM aligned CPTAC3 bcde3d53-2c50-451d-ab72-0f4063c84a5f cdb2e9f074037af86363e6199ae4f233 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.WXS.A.hg38 C3L-05020 LSCC WXS tissue_normal CPT0262510006 b696be03-3e41-417a-8d7b-547e4742653a_wxs_gdc_realn.bam 27328228053 BAM harmonized CPTAC3 06b7290c-6beb-485f-884c-10dd6ffdffb8 52b9e56fd2586448a4bcba5868130156 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05020.WXS.N C3L-05020 LSCC WXS blood_normal CPT0263780002 CPT0263780002.WholeExome.RP-1303.bam 24858044942 BAM aligned CPTAC3 788eb82d-4e29-4c8b-9805-47a72af3ecfb a8f6e2c32edfa636b4ca6af014a063fd {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05020.WXS.N.hg38 C3L-05020 LSCC WXS blood_normal CPT0263780002 9a5e7de2-a3e2-4837-b944-c4f71db5be2f_wxs_gdc_realn.bam 33574755538 BAM harmonized CPTAC3 fb746083-979c-4c23-8273-892698ca18f6 5857c655d9702ddaad2dfa5c312175e3 {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05020.WXS.T C3L-05020 LSCC WXS tumor CPT0262460006 CPT0262460006.WholeExome.RP-1303.bam 26091171819 BAM aligned CPTAC3 d664228c-afbf-40df-8a30-867a96666d25 ec9f77ced04ff4183529ce96703fd644 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor"} -C3L-05020.WXS.T.hg38 C3L-05020 LSCC WXS tumor CPT0262460006 816c3a90-a426-4ad7-947b-b338d7b7d45d_wxs_gdc_realn.bam 35868018839 BAM harmonized CPTAC3 0361b624-07a3-4fad-a4a8-616eb8d2651a 5d6f8a1809781d32fb1f33e5a761b411 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor"} -C3L-05022.MethArray.Green.A C3L-05022 LSCC Methylation_Array tissue_normal CPT0275010006 204367400087_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1322308d-335a-4eed-888c-7b5350e975e6 0e9dfa584ea43fed53d451cc6b9ce146 {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.MethArray.Green.T C3L-05022 LSCC Methylation_Array tumor CPT0274960006 204372030090_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1e925439-9460-498c-953c-ffc5a33ab7a5 d7361a8dd3a714f7237f38c8bb60bad9 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor"} -C3L-05022.MethArray.Red.A C3L-05022 LSCC Methylation_Array tissue_normal CPT0275010006 204367400087_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 f6b47ea6-b89d-42ca-a046-d71489d4e555 38465b844862f201e632be53a9ff3c5b {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.MethArray.Red.T C3L-05022 LSCC Methylation_Array tumor CPT0274960006 204372030090_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 302db99f-5510-4de1-89cf-5e67dd32fe45 10909fe4748763ca7d8330d8ffc79ca1 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor"} -C3L-05022.miRNA-Seq.A.hg38 C3L-05022 LSCC miRNA-Seq tissue_normal CPT0275010009 c4de58a1-0e14-4ee8-9ba1-390f28b2d53a_mirnaseq_gdc_realn.bam 289901167 BAM harmonized CPTAC3 d97eacc0-62ac-476c-a434-c61eede0644f 5edaaf5c905770c443c30bbcf9d322cb {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.miRNA-Seq.S16_L008_R1.T C3L-05022 LSCC miRNA-Seq tumor CPT0274960009 200224_UNC31-K00269_0267_AHC722BBXY_CCGTCC_S16_L008_R1_001.unaln.bam 281311755 BAM S16_L008_R1 unaligned CPTAC3 f1127c44-595f-4e4a-afc6-428f024acca2 5fc790a1da3217e531014e8f4fc1e153 {"aliquot_tag": "ALQ_1928468d", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05022.miRNA-Seq.S23_L005_R1.A C3L-05022 LSCC miRNA-Seq tissue_normal CPT0275010009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TGACCA_S23_L005_R1_001.unaln.bam 260915964 BAM S23_L005_R1 unaligned CPTAC3 49d3ba55-2377-43ba-ab75-d97802cf4d0e fc577de26657bfb3a09f09baa615a4c9 {"aliquot_tag": "ALQ_2a70c0e1", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.miRNA-Seq.T.hg38 C3L-05022 LSCC miRNA-Seq tumor CPT0274960009 42811ed2-abb9-4d04-a0f4-cacb17339e59_mirnaseq_gdc_realn.bam 310163774 BAM harmonized CPTAC3 b2f46963-d645-458b-8d46-657b0a30a7a7 6c64e6cc608cb60dbf44e7888d6349aa {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor"} -C3L-05022.RNA-Seq.chimeric.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.chimeric.gdc_realn.bam 30850969 BAM chimeric harmonized CPTAC3 45408007-93bd-427e-9c1e-c6cb21037ea1 4b9264ed73821a3a5730b251ef39eb9d {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.RNA-Seq.chimeric.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.chimeric.gdc_realn.bam 43546465 BAM chimeric harmonized CPTAC3 34c761b5-63f9-438c-bbf9-987431d56928 4ee478107aa2020298476993710a20ea {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor"} -C3L-05022.RNA-Seq.genomic.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.genomic.gdc_realn.bam 7741440304 BAM genomic harmonized CPTAC3 c43d1b44-2e67-4dca-9502-e88b1fcd60de abc4b8ecfe4d5409664a53d3ebcd9a33 {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.RNA-Seq.genomic.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.genomic.gdc_realn.bam 9066957871 BAM genomic harmonized CPTAC3 c398c2c4-c563-4a5b-98e0-8278b3822428 a065b8fc7248ffb12d59131d17124315 {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor"} -C3L-05022.RNA-Seq.S16_L004_R1.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R1_001.fastq.gz 4451704090 FASTQ S16_L004_R1 unaligned CPTAC3 fa0e4fbb-9a10-4dca-9e54-ae9915a506ca e14b17bb00f8114f809ee82570f9a47d {"aliquot_tag": "ALQ_1928468d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05022.RNA-Seq.S16_L004_R2.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R2_001.fastq.gz 4874032343 FASTQ S16_L004_R2 unaligned CPTAC3 e3d4a9ce-c37c-4578-9eca-9d6719f10efa 862b2812a1ec86b1eb25073f32c14f17 {"aliquot_tag": "ALQ_1928468d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05022.RNA-Seq.S4_L005_R1.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R1_001.fastq.gz 3958739243 FASTQ S4_L005_R1 unaligned CPTAC3 bef01d6f-1e3d-4082-8717-e9efcf6430f7 c5c360a9adbd5202b6001eab443588d1 {"aliquot_tag": "ALQ_2a70c0e1", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.RNA-Seq.S4_L005_R2.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R2_001.fastq.gz 4207828548 FASTQ S4_L005_R2 unaligned CPTAC3 9a2e01f8-b26f-494f-b0bc-03d622bdf34e 160665a43a1b34320f3f02809ef4f62f {"aliquot_tag": "ALQ_2a70c0e1", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.RNA-Seq.transcriptome.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.transcriptome.gdc_realn.bam 10220446451 BAM transcriptome harmonized CPTAC3 38d177e8-b149-4936-b6e0-144bd1cba2e7 0cc336335ca4fcf39b27ed6c22789303 {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.RNA-Seq.transcriptome.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.transcriptome.gdc_realn.bam 12018150526 BAM transcriptome harmonized CPTAC3 f8b25697-7416-4ece-ac7f-8bf1755df2fd 2d409bba5f8dd2ee6b1c422b30364941 {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor"} -C3L-05022.WGS.N C3L-05022 LSCC WGS blood_normal CPT0273480002 CPT0273480002.WholeGenome.RP-2158.bam 24664061553 BAM aligned CPTAC3 c6195cca-32d9-4180-af27-6ed4deeb828d b105d1bd51dbfb280b3e28f318d943b9 {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal"} -C3L-05022.WGS.N.hg38 C3L-05022 LSCC WGS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wgs_gdc_realn.bam 73737561516 BAM harmonized CPTAC3 e06ef31f-a018-4db4-9f1b-b160bd3d0533 c4d45defcf1c2f292578dc7830484361 {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal"} -C3L-05022.WGS.T C3L-05022 LSCC WGS tumor CPT0274960006 CPT0274960006.WholeGenome.RP-2158.bam 30134145444 BAM aligned CPTAC3 d7dfe5fa-ec4f-4075-aaed-9e3a7d3d85e8 0c3688c2ed197eb04e4a4e2a32a40798 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor"} -C3L-05022.WGS.T C3L-05022 LSCC WGS tumor CPT0274960006 CPT0274960006.WholeGenome.RP-2158.bam 30181890872 BAM aligned CPTAC3 201af3c2-e107-4d5c-bcb2-a2ea3b202100 374f04ef59cab6c983b1cc844c1482be {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor"} -C3L-05022.WGS.T.hg38 C3L-05022 LSCC WGS tumor CPT0274960006 b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wgs_gdc_realn.bam 89702754383 BAM harmonized CPTAC3 4e7a6847-796d-48c9-88e6-e620fe1a0ace fb61b78d5e351f903342e50545f90533 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor"} -C3L-05022.WXS.A C3L-05022 LSCC WXS tissue_normal CPT0275010006 CPT0275010006.WholeExome.RP-1303.bam 23075889681 BAM aligned CPTAC3 fdb6e82e-7991-470f-aa6b-ce8068a2939f 82bec9d2eec3c6b8f3353e5c2ba4d1ba {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.WXS.A.hg38 C3L-05022 LSCC WXS tissue_normal CPT0275010006 68686973-1dbf-4d47-a43e-69a3009fc8b3_wxs_gdc_realn.bam 32239008987 BAM harmonized CPTAC3 4466a26a-001c-476d-a592-db2ce4303c91 c89b6dc9a4dadbc1abbf50ab67800e19 {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05022.WXS.N C3L-05022 LSCC WXS blood_normal CPT0273480002 CPT0273480002.WholeExome.RP-1303.bam 37845812059 BAM aligned CPTAC3 1b345167-b4b6-426a-b203-7f771130c218 df889fce7d02b14000cb612284c62432 {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal"} -C3L-05022.WXS.N.hg38 C3L-05022 LSCC WXS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wxs_gdc_realn.bam 51869172741 BAM harmonized CPTAC3 5375bbe6-ca93-44ce-b9b3-581538a8bdc8 e56a7826cf6322fe104670d3f0c115ef {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal"} -C3L-05022.WXS.T C3L-05022 LSCC WXS tumor CPT0274960006 CPT0274960006.WholeExome.RP-1303.bam 25934422470 BAM aligned CPTAC3 6317a479-727c-48bc-a913-dea3d6c7f2fe 5d180ff0ba35aa18e3b4279e8ca552bd {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor"} -C3L-05022.WXS.T.hg38 C3L-05022 LSCC WXS tumor CPT0274960006 b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wxs_gdc_realn.bam 35376808743 BAM harmonized CPTAC3 2e26f3ad-c58f-4fbd-a872-5310601a5703 9e1a7b7a7c2cb07f67213d8794c34f83 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor"} -C3L-05029.RNA-Seq.chimeric.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.chimeric.gdc_realn.bam 135221688 BAM chimeric harmonized CPTAC3 ea91672c-bfdb-4dcf-8745-cd28f0af0249 c99017f7a7f0c045855aed077fcf6c6d {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor"} -C3L-05029.RNA-Seq.genomic.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.genomic.gdc_realn.bam 8929917342 BAM genomic harmonized CPTAC3 26db7c05-6a10-4610-bd9c-68220ad6c86f 6ffbefd9c6b448c8cfffbc8ebbea085e {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor"} -C3L-05029.RNA-Seq.S69_R1.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R1_001.fastq.gz 4726914591 FASTQ S69_R1 unaligned CPTAC3 50652094-7875-4c68-bc43-be6814bee6a4 cb914cccb2d5ebaeb9609f22bacb9724 {"aliquot_tag": "ALQ_73748e25", "sample": "S69", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05029.RNA-Seq.S69_R2.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R2_001.fastq.gz 4865172580 FASTQ S69_R2 unaligned CPTAC3 109b67b9-d2c9-4e25-afa0-4f54afedeff4 1a1045471459cb779555b61173d1d2c0 {"aliquot_tag": "ALQ_73748e25", "sample": "S69", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05029.RNA-Seq.transcriptome.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.transcriptome.gdc_realn.bam 6458944877 BAM transcriptome harmonized CPTAC3 1f2cdeaa-053f-4b6f-b722-c51f870df7c8 128cacb12622193ca445f66daadfcd12 {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor"} -C3L-05145.MethArray.Green.A C3L-05145 LSCC Methylation_Array tissue_normal CPT0297120006 204372030014_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 7324aadf-49aa-4aa4-9151-81050d77d67f 7f8b65d702d1c7048f65c51462386718 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.MethArray.Green.T C3L-05145 LSCC Methylation_Array tumor CPT0296990006 204372030071_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 de2e299d-9bb3-4020-b878-b104e31cf28c e0afcb32be79e2e061df2f1293e27e7f {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor"} -C3L-05145.MethArray.Red.A C3L-05145 LSCC Methylation_Array tissue_normal CPT0297120006 204372030014_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 ea4dcb69-047c-4206-9f4b-32b4303cf94a cd08d7ee3ff4ad3889517f6f4e2fa578 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.MethArray.Red.T C3L-05145 LSCC Methylation_Array tumor CPT0296990006 204372030071_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 ef02b7eb-14f4-4dd9-a2a9-b07384212319 2664661857a03e42b38cd19f41828ceb {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor"} -C3L-05145.miRNA-Seq.A.hg38 C3L-05145 LSCC miRNA-Seq tissue_normal CPT0297120009 8da5d881-ab4a-4651-8d95-fe40477cba9c_mirnaseq_gdc_realn.bam 272620643 BAM harmonized CPTAC3 922b515e-4ed5-4e7d-b674-f181a0b295d4 a5438eeb30aa084883eb5860a77abf6a {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.miRNA-Seq.S19_L005_R1.A C3L-05145 LSCC miRNA-Seq tissue_normal CPT0297120009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGAAA_S19_L005_R1_001.unaln.bam 245362138 BAM S19_L005_R1 unaligned CPTAC3 3618840a-deb4-4e95-a67b-a8f829877638 b64021ab92279a45d590fac7797542d6 {"aliquot_tag": "ALQ_24996a8f", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.miRNA-Seq.S45_L007_R1.T C3L-05145 LSCC miRNA-Seq tumor CPT0296990009 200224_UNC31-K00269_0267_AHC722BBXY_TCATTC_S45_L007_R1_001.unaln.bam 181281986 BAM S45_L007_R1 unaligned CPTAC3 ea46e1dc-656e-49ac-b425-45cb9eb93bf8 395f06eeb0f28228a157455c4095394d {"aliquot_tag": "ALQ_196dd247", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05145.miRNA-Seq.T.hg38 C3L-05145 LSCC miRNA-Seq tumor CPT0296990009 906921c0-7be5-4643-80ea-064fa2eaae2f_mirnaseq_gdc_realn.bam 199968133 BAM harmonized CPTAC3 5071d4e0-4897-48eb-9f35-5e58c39f7f7b 326a44d726e5eae2e6aef7ad90b1ebd5 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor"} -C3L-05145.RNA-Seq.chimeric.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.chimeric.gdc_realn.bam 35267136 BAM chimeric harmonized CPTAC3 2652ba4a-f2ad-4a77-bad1-11b9ade9c8c6 eff8cd26ce15d58aa7b56ebf641e2cb5 {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.RNA-Seq.chimeric.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.chimeric.gdc_realn.bam 29043298 BAM chimeric harmonized CPTAC3 8fb4abe5-5889-41d2-8724-3925e2c6869f 3179c3a2a4eeb4c8bda2fe2f957de5d5 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor"} -C3L-05145.RNA-Seq.genomic.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.genomic.gdc_realn.bam 9074733377 BAM genomic harmonized CPTAC3 2f382a4d-2a6d-4dde-b354-efed8d7539c1 afebb12c02a4d00b03aa5af38a1d909d {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.RNA-Seq.genomic.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.genomic.gdc_realn.bam 7200929287 BAM genomic harmonized CPTAC3 bf813b3b-cf6d-4dfa-a856-01e84805e4a3 82e7d2f127a2974571d8cc13ffd766c0 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor"} -C3L-05145.RNA-Seq.S13_L004_R1.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R1_001.fastq.gz 3402545997 FASTQ S13_L004_R1 unaligned CPTAC3 8cc89418-7fb5-4ced-8cb0-57380227d1da 7f47a1db480b85d0aff263bf68439eb8 {"aliquot_tag": "ALQ_196dd247", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05145.RNA-Seq.S13_L004_R2.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R2_001.fastq.gz 3646675574 FASTQ S13_L004_R2 unaligned CPTAC3 5f94f5a5-fa3a-4976-972b-044ec97b853d d7329ff090c4eb86355c81e279184da1 {"aliquot_tag": "ALQ_196dd247", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05145.RNA-Seq.S1_L001_R1.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R1_001.fastq.gz 4135338522 FASTQ S1_L001_R1 unaligned CPTAC3 8bb9aec1-8ad1-4c7a-bb5c-b06d1d2e7d60 9d46ffa784c8d576d275734148a5f79f {"aliquot_tag": "ALQ_24996a8f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.RNA-Seq.S1_L001_R2.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R2_001.fastq.gz 4993363659 FASTQ S1_L001_R2 unaligned CPTAC3 5d6ef432-bab5-4b99-98e8-c0f2290f12f7 08741edc11e248901b16d7d844089831 {"aliquot_tag": "ALQ_24996a8f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.RNA-Seq.transcriptome.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.transcriptome.gdc_realn.bam 10329963587 BAM transcriptome harmonized CPTAC3 d9c8c5ed-4b02-4665-b2b2-ff47b01d21cb e79ddca0788793baf4421817837d3c5f {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.RNA-Seq.transcriptome.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.transcriptome.gdc_realn.bam 9158484272 BAM transcriptome harmonized CPTAC3 a15a3f78-3810-4f22-a7f6-e1041d688374 500ab131c282793a2558aea5dd04dcc0 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor"} -C3L-05145.WGS.N C3L-05145 LSCC WGS blood_normal CPT0297190002 CPT0297190002.WholeGenome.RP-2158.bam 31177574695 BAM aligned CPTAC3 29a8d6c4-7bbd-4a4c-9cc9-5647c8d00a1d e4d12ae63dea50468bae7cffd5973723 {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal"} -C3L-05145.WGS.N.hg38 C3L-05145 LSCC WGS blood_normal CPT0297190002 876141d5-19d4-4daf-9415-07d0edb645da_wgs_gdc_realn.bam 94886173994 BAM harmonized CPTAC3 13daaafc-c444-40ce-b023-af39bd2306a2 a2f023098c723f7522243e9673407b0e {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal"} -C3L-05145.WGS.T C3L-05145 LSCC WGS tumor CPT0296990006 CPT0296990006.WholeGenome.RP-2158.bam 27984798543 BAM aligned CPTAC3 3490fa29-008f-44ff-b76b-fac182542f77 e63a3cf84a79dcceb0a7e817e81a1c74 {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor"} -C3L-05145.WGS.T.hg38 C3L-05145 LSCC WGS tumor CPT0296990006 01ccd04c-f42e-4b22-a3a3-c54dcbad40cc_wgs_gdc_realn.bam 84529226057 BAM harmonized CPTAC3 6eb74828-fb73-4de6-968c-833bc1f06b38 d5c5c498eab7b252b8e804b726f09228 {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor"} -C3L-05145.WXS.A C3L-05145 LSCC WXS tissue_normal CPT0297120006 CPT0297120006.WholeExome.RP-1303.bam 27669291063 BAM aligned CPTAC3 47360df6-1e53-4fc0-a7fc-73f0387f6bdb 300275af71ba45f73795b67d343cb1f9 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.WXS.A.hg38 C3L-05145 LSCC WXS tissue_normal CPT0297120006 97633450-1e60-4185-91aa-18a60c7ddb64_wxs_gdc_realn.bam 37461342490 BAM harmonized CPTAC3 60209f8a-278c-48ac-95f0-0adb8b854c00 a071794a7f164123f603eb23c1d25cb3 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05145.WXS.N C3L-05145 LSCC WXS blood_normal CPT0297190002 CPT0297190002.WholeExome.RP-1303.bam 25464554719 BAM aligned CPTAC3 52ad52f8-5848-427f-a7d8-ac908754266e da8e95c94102ea11a122b9cea6526dd6 {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal"} -C3L-05145.WXS.N.hg38 C3L-05145 LSCC WXS blood_normal CPT0297190002 876141d5-19d4-4daf-9415-07d0edb645da_wxs_gdc_realn.bam 34247849302 BAM harmonized CPTAC3 c10e82d4-555c-4c14-8b58-1b9110e155a6 263a33af0a58814e1f61fce7227721b2 {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal"} -C3L-05145.WXS.T C3L-05145 LSCC WXS tumor CPT0296990006 CPT0296990006.WholeExome.RP-1303.bam 25498273813 BAM aligned CPTAC3 ce6fc164-8385-46cd-a759-febf945b50b6 f48bd8f1b324adc42b5044d0d6d8c85c {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor"} -C3L-05145.WXS.T.hg38 C3L-05145 LSCC WXS tumor CPT0296990006 01ccd04c-f42e-4b22-a3a3-c54dcbad40cc_wxs_gdc_realn.bam 35246497482 BAM harmonized CPTAC3 acf4f83b-2a1a-4eaf-8ae4-0425b6eab132 cac85bb398a1cf7146f740d335dccc23 {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor"} -C3L-05148.MethArray.Green.A C3L-05148 LSCC Methylation_Array tissue_normal CPT0278920006 204372030022_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 948e6433-bd96-4216-9cb0-2a281e5c1075 b6f8b6c294bfefe21fc08f278dcf6683 {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.MethArray.Green.T C3L-05148 LSCC Methylation_Array tumor CPT0278900009 204372030076_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 562f6130-8884-454e-abcb-dc9263ce2f39 171c73919f8b9cd3d84063c64c615303 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor"} -C3L-05148.MethArray.Red.A C3L-05148 LSCC Methylation_Array tissue_normal CPT0278920006 204372030022_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 709076fa-8891-438d-909e-1074036bbc09 bf547af77fa414687bfd96a406a393ff {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.MethArray.Red.T C3L-05148 LSCC Methylation_Array tumor CPT0278900009 204372030076_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 441b6d64-c177-43bd-8b6a-80694fa1d42b 86a5c455290e097b6f32a00dc4f349d3 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor"} -C3L-05148.miRNA-Seq.A.hg38 C3L-05148 LSCC miRNA-Seq tissue_normal CPT0278920009 2c676eb7-4ae1-4a16-aab9-0e3387a6e0a6_mirnaseq_gdc_realn.bam 249871930 BAM harmonized CPTAC3 665403f3-3602-4a7b-8246-7364a4ef7f6f ffc25b62166929dabaea4b21a029df2d {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.miRNA-Seq.S4_L005_R1.A C3L-05148 LSCC miRNA-Seq tissue_normal CPT0278920009 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTTCC_S4_L005_R1_001.unaln.bam 222703925 BAM S4_L005_R1 unaligned CPTAC3 dddb86c8-2eb9-4517-9b75-b067e889c225 6d0bfedc29dbb8c90723bf14b75b96bc {"aliquot_tag": "ALQ_2b088a39", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.miRNA-Seq.S4_L006_R1.T C3L-05148 LSCC miRNA-Seq tumor CPT0278900006 200224_UNC31-K00269_0267_AHC722BBXY_TGACCA_S4_L006_R1_001.unaln.bam 248400241 BAM S4_L006_R1 unaligned CPTAC3 66b146b6-d8f9-4add-b0d3-361a820a18b9 89738cbaa26e83b71e986aa9d35eba8e {"aliquot_tag": "ALQ_c177c4c8", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05148.miRNA-Seq.T.hg38 C3L-05148 LSCC miRNA-Seq tumor CPT0278900006 3e8a0b36-3a6f-4441-9c15-8dfb0977a8f6_mirnaseq_gdc_realn.bam 271787631 BAM harmonized CPTAC3 33b06b47-aa51-4fad-af81-c00e7d9dd3c7 da649d712a7d065fb64639944526342e {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor"} -C3L-05148.RNA-Seq.chimeric.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.chimeric.gdc_realn.bam 34259978 BAM chimeric harmonized CPTAC3 63e6403a-5849-4329-b61e-8f1aff33b5df 06fc08b7991e78abeb2d98de89df71fb {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.RNA-Seq.chimeric.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.chimeric.gdc_realn.bam 59959525 BAM chimeric harmonized CPTAC3 cd80e021-0eeb-45fb-a664-477eb1112748 c29e77a9e451fe26567e058e88e0adae {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor"} -C3L-05148.RNA-Seq.genomic.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.genomic.gdc_realn.bam 8757153948 BAM genomic harmonized CPTAC3 b0348e7d-8595-4db8-aed6-2aa2b55e6fd7 f1d3700797633edff76fc1e600c54a2d {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.RNA-Seq.genomic.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.genomic.gdc_realn.bam 6362235313 BAM genomic harmonized CPTAC3 c58d6c8d-41e6-463e-bda3-5fa58727b0f8 2ca46730b16c641d8641bd7f15bb8816 {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor"} -C3L-05148.RNA-Seq.S14_L008_R1.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R1_001.fastq.gz 4305299688 FASTQ S14_L008_R1 unaligned CPTAC3 bb2fb91b-0a34-4ec2-ab6e-68a21aa1e3a6 036f2f2041f03d70b77e0f96de04ca72 {"aliquot_tag": "ALQ_2b088a39", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.RNA-Seq.S14_L008_R2.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R2_001.fastq.gz 4797159486 FASTQ S14_L008_R2 unaligned CPTAC3 53a00811-67fa-4991-9b18-fa784319d987 691a5bd1d8dee588d5f3b5f2b3ee7608 {"aliquot_tag": "ALQ_2b088a39", "sample": "S14", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.RNA-Seq.S20_L005_R1.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R1_001.fastq.gz 3041948461 FASTQ S20_L005_R1 unaligned CPTAC3 af114fd2-b8b1-48fd-bbae-965cd6ecc918 9f3fc4bc8d7d998d729ffd64b1bcc99c {"aliquot_tag": "ALQ_c177c4c8", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05148.RNA-Seq.S20_L005_R2.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R2_001.fastq.gz 3201920741 FASTQ S20_L005_R2 unaligned CPTAC3 c95f3058-14e1-4708-a812-b8114e516f1c 534e6d8becceee41a1beb97d3579d7a0 {"aliquot_tag": "ALQ_c177c4c8", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05148.RNA-Seq.transcriptome.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.transcriptome.gdc_realn.bam 10580180827 BAM transcriptome harmonized CPTAC3 9d58c51d-7ea0-4e93-8cd3-e26f3497be61 38061710882e84da3a851e74f59f8a32 {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.RNA-Seq.transcriptome.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.transcriptome.gdc_realn.bam 7841896510 BAM transcriptome harmonized CPTAC3 de55e494-dd8c-4fb1-9bbb-8b618d7c30a4 2c2a9abe19fecd98b1a220f872d369f0 {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor"} -C3L-05148.WGS.N C3L-05148 LSCC WGS blood_normal CPT0278990002 CPT0278990002.WholeGenome.RP-2158.bam 29836582535 BAM aligned CPTAC3 e189b041-d5a6-4dd2-88c5-e6b4c22fc251 8f19565754ebc3a294551126f90c8a8c {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05148.WGS.N.hg38 C3L-05148 LSCC WGS blood_normal CPT0278990002 ab27f25f-6b76-4a14-be5a-4897d759a848_wgs_gdc_realn.bam 90006842825 BAM harmonized CPTAC3 99d55ea8-dde2-427d-9e42-1f122702d349 7758a2ce2fb6102798feaca5e613396b {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05148.WGS.T C3L-05148 LSCC WGS tumor CPT0278900009 CPT0278900009.WholeGenome.RP-2158.bam 23216766508 BAM aligned CPTAC3 41f7ee5c-da0b-4cae-a78e-c80e0a5255cb 98c2e3253f37ea32ec048db880eb01d3 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor"} -C3L-05148.WGS.T.hg38 C3L-05148 LSCC WGS tumor CPT0278900009 fd7fff26-2c02-43f1-b56f-81fccd132dbc_wgs_gdc_realn.bam 68509068022 BAM harmonized CPTAC3 8addce24-cadb-40bf-9a5a-7171feaf5dd3 dc5f07991a1043fafa3e92cede8f9df1 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor"} -C3L-05148.WXS.A C3L-05148 LSCC WXS tissue_normal CPT0278920006 CPT0278920006.WholeExome.RP-1303.bam 26528568031 BAM aligned CPTAC3 c70423f7-0300-49f1-aadd-89a917e6544c a6f6a1704eede37712ceac94af0e5bd1 {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.WXS.A.hg38 C3L-05148 LSCC WXS tissue_normal CPT0278920006 50a814ec-b172-4f55-a921-e4619b43b16e_wxs_gdc_realn.bam 36446700872 BAM harmonized CPTAC3 e5a190e6-38b4-477d-8560-e1b3d5d937ee 6abdfbde001697134734e215bd8fe79c {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05148.WXS.N C3L-05148 LSCC WXS blood_normal CPT0278990002 CPT0278990002.WholeExome.RP-1303.bam 24646543150 BAM aligned CPTAC3 9cdf4723-b6c6-48b8-a822-c19ca833ba69 00fab83d5f0755b97c3bc9bc4d8b1136 {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05148.WXS.N.hg38 C3L-05148 LSCC WXS blood_normal CPT0278990002 ab27f25f-6b76-4a14-be5a-4897d759a848_wxs_gdc_realn.bam 33237508542 BAM harmonized CPTAC3 1706c8ca-2fe4-4c29-8999-05ba0e42f182 295c87e23484f368358c15aab1f9dea3 {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05148.WXS.T C3L-05148 LSCC WXS tumor CPT0278900009 CPT0278900009.WholeExome.RP-1303.bam 37401707555 BAM aligned CPTAC3 e3b2877d-f332-4128-bc11-8dc546f1bb9e bb161899b0fb2b129e92d4006cb5fbad {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor"} -C3L-05148.WXS.T.hg38 C3L-05148 LSCC WXS tumor CPT0278900009 fd7fff26-2c02-43f1-b56f-81fccd132dbc_wxs_gdc_realn.bam 51281421307 BAM harmonized CPTAC3 35de6836-16b2-41a9-aee8-02ff49da61b4 0e697753075e4c0b03ceb3d476351c62 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor"} -C3L-05150.MethArray.Green.A C3L-05150 LSCC Methylation_Array tissue_normal CPT0277940006 204372030070_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b7e93fc2-a8c2-408b-8939-c80fc27b8bda 6139221ca91c9e5ade539bb3a251f2aa {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.MethArray.Green.T C3L-05150 LSCC Methylation_Array tumor CPT0277920009 204367400087_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e49ac7c9-576e-402f-8d22-a57d5b0474d9 e4aa0b4936a7cc7e1e82a73b3dfb1311 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor"} -C3L-05150.MethArray.Red.A C3L-05150 LSCC Methylation_Array tissue_normal CPT0277940006 204372030070_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 ee2ea3c2-7b09-402b-b9ec-e38dc7f05a22 0cbe9d0af4a9a2dbff0c6858e9103923 {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.MethArray.Red.T C3L-05150 LSCC Methylation_Array tumor CPT0277920009 204367400087_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 19169300-fb51-430e-89ea-c78ddc768240 8b7a5331cbed5e3dd6d205620625c731 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor"} -C3L-05150.miRNA-Seq.A.hg38 C3L-05150 LSCC miRNA-Seq tissue_normal CPT0277940009 8e930c81-fb0e-4c18-8a70-329884b362b4_mirnaseq_gdc_realn.bam 255902931 BAM harmonized CPTAC3 0c225fde-e318-4f9b-9e24-004a5f6cbe10 6fbee99c5aa0ac1fbca809cb92522711 {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.miRNA-Seq.S3_L005_R1.A C3L-05150 LSCC miRNA-Seq tissue_normal CPT0277940009 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTCAA_S3_L005_R1_001.unaln.bam 232618859 BAM S3_L005_R1 unaligned CPTAC3 8324c9d5-b03d-440c-9686-f54489ad24cb dababe677eafab1b3877a37d4d761199 {"aliquot_tag": "ALQ_52000f70", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.miRNA-Seq.S3_L006_R1.T C3L-05150 LSCC miRNA-Seq tumor CPT0277920006 200224_UNC31-K00269_0267_AHC722BBXY_TTAGGC_S3_L006_R1_001.unaln.bam 203756659 BAM S3_L006_R1 unaligned CPTAC3 896c25fc-775f-4a71-8aaf-7f43bde7d8c2 12d62086a1e43eeb1f7d598de89063bc {"aliquot_tag": "ALQ_4dffe741", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05150.miRNA-Seq.T.hg38 C3L-05150 LSCC miRNA-Seq tumor CPT0277920006 eb3ec794-3743-45fc-9767-9534255ce4b0_mirnaseq_gdc_realn.bam 223779809 BAM harmonized CPTAC3 b11d1962-fe69-4d80-bdff-62f4428944b5 cc0b35018d7d645e3a54ce86aaed08cf {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor"} -C3L-05150.RNA-Seq.chimeric.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.chimeric.gdc_realn.bam 31128161 BAM chimeric harmonized CPTAC3 b0d8a593-ff82-45fc-8c30-529876fda70f d284eb219616f4af514b7e8f57c295c5 {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.RNA-Seq.chimeric.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.chimeric.gdc_realn.bam 113789349 BAM chimeric harmonized CPTAC3 22148f60-02f5-4b8a-87e1-84939f862ebc 312f8df2a6f4cd0d007d5f823044e230 {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor"} -C3L-05150.RNA-Seq.genomic.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.genomic.gdc_realn.bam 8369842871 BAM genomic harmonized CPTAC3 00916619-d678-4776-a3ea-7699076ad762 dd30d03df49974335e2621da7635510a {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.RNA-Seq.genomic.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.genomic.gdc_realn.bam 8330445928 BAM genomic harmonized CPTAC3 b9c2e4b2-eed1-4ca0-94db-c9589949cbdb 3b6d5e54603d909a12762e4a2cad0fbb {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor"} -C3L-05150.RNA-Seq.S13_L008_R1.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R1_001.fastq.gz 4023851157 FASTQ S13_L008_R1 unaligned CPTAC3 af0a2ae8-1213-4f55-b0aa-3400671c912b 3b1264abb5e7fda32978349307ed0c50 {"aliquot_tag": "ALQ_52000f70", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.RNA-Seq.S13_L008_R2.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R2_001.fastq.gz 4510871326 FASTQ S13_L008_R2 unaligned CPTAC3 a45c7b13-759f-40cd-8f23-20187e682376 478f6ce516d0277437ec401d334c2615 {"aliquot_tag": "ALQ_52000f70", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.RNA-Seq.S19_L005_R1.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R1_001.fastq.gz 4037503113 FASTQ S19_L005_R1 unaligned CPTAC3 8fcf53e9-43d9-43c0-8df2-9f87b28ada7e a0602f0e4f67335c01329131a8d62daa {"aliquot_tag": "ALQ_4dffe741", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05150.RNA-Seq.S19_L005_R2.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R2_001.fastq.gz 4226601737 FASTQ S19_L005_R2 unaligned CPTAC3 1183ebe9-4e91-440d-8fad-fbe57a12f3fa fa9302b4989621fc341df49d928d5cfa {"aliquot_tag": "ALQ_4dffe741", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05150.RNA-Seq.transcriptome.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.transcriptome.gdc_realn.bam 9909747437 BAM transcriptome harmonized CPTAC3 6da77bc8-419a-4f5a-bc7d-4485d5cdbb42 6a367c27827dcd8590b93227c40e3ecc {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.RNA-Seq.transcriptome.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.transcriptome.gdc_realn.bam 10002312903 BAM transcriptome harmonized CPTAC3 fc3de59a-532d-4ae3-af14-30dc1776d005 89e09fc952cd781d41d98cd080a41892 {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor"} -C3L-05150.WGS.N C3L-05150 LSCC WGS blood_normal CPT0278010002 CPT0278010002.WholeGenome.RP-2158.bam 25019707852 BAM aligned CPTAC3 5b5988f0-d7b2-42db-9056-424626d5a763 01b3e2b6bd805492754b9ecf7bc7fcb9 {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal"} -C3L-05150.WGS.N.hg38 C3L-05150 LSCC WGS blood_normal CPT0278010002 70f3bcdb-e8fd-4054-b659-dfa5e4def710_wgs_gdc_realn.bam 73719380386 BAM harmonized CPTAC3 0cc84dab-4866-4121-aac6-08c250d8727a 6afa7bc5233c503b48d6ef07a2069d26 {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal"} -C3L-05150.WGS.T C3L-05150 LSCC WGS tumor CPT0277920009 CPT0277920009.WholeGenome.RP-2158.bam 30018505319 BAM aligned CPTAC3 aacd0bc4-b71d-41f0-b6de-d81ea37b1607 2189aa6682c9f31525f3469638ba02bf {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor"} -C3L-05150.WGS.T.hg38 C3L-05150 LSCC WGS tumor CPT0277920009 1645ce61-f1b1-4d70-b60f-ef20b644bf3e_wgs_gdc_realn.bam 90232145319 BAM harmonized CPTAC3 62869dd2-c112-46cb-9fea-79204061f30a 9ec800f9d57f3ba870a04fcb39ac5106 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor"} -C3L-05150.WXS.A C3L-05150 LSCC WXS tissue_normal CPT0277940006 CPT0277940006.WholeExome.RP-1303.bam 19323806295 BAM aligned CPTAC3 67523238-ffb3-40f7-8535-3e37aa2a6dbc 77a1a43e7fffb4117feba03786730586 {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.WXS.A.hg38 C3L-05150 LSCC WXS tissue_normal CPT0277940006 b9f48b85-1990-4e5d-b74b-f67b222ba8d7_wxs_gdc_realn.bam 27055430636 BAM harmonized CPTAC3 e34fcdc3-4c28-4cf5-8b87-e7ece2fdef53 fad271eccbc88e91b1c9c07a880824d3 {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05150.WXS.N C3L-05150 LSCC WXS blood_normal CPT0278010002 CPT0278010002.WholeExome.RP-1303.bam 28230546190 BAM aligned CPTAC3 651b29de-2ff3-4749-a5a6-7e01b95dfbd4 9224e86db6d62b05c9f7ea2bb7e9de01 {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal"} -C3L-05150.WXS.N.hg38 C3L-05150 LSCC WXS blood_normal CPT0278010002 70f3bcdb-e8fd-4054-b659-dfa5e4def710_wxs_gdc_realn.bam 38610432438 BAM harmonized CPTAC3 c0b1424d-4ff0-4e1e-bfcf-9f4f795c222c 3f797f31d014552c482999a9f17b480d {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal"} -C3L-05150.WXS.T C3L-05150 LSCC WXS tumor CPT0277920009 CPT0277920009.WholeExome.RP-1303.bam 22431760642 BAM aligned CPTAC3 64fdf012-973d-45a2-8a96-08aa0c57506e adb790000ffa84ff426fbb017b9bb80d {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor"} -C3L-05150.WXS.T.hg38 C3L-05150 LSCC WXS tumor CPT0277920009 1645ce61-f1b1-4d70-b60f-ef20b644bf3e_wxs_gdc_realn.bam 30692653613 BAM harmonized CPTAC3 54834be3-ad5e-4d3e-b439-bdafdb5241d2 5b06235da1b2b83f8d0627e849cf4590 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor"} -C3L-05172.MethArray.Green.A C3L-05172 LSCC Methylation_Array tissue_normal CPT0297360006 204367400148_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8840c980-0d3f-467d-9ae4-fabbd4112f4f 94e4d7d1f950e068e66543851cd64b0c {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.MethArray.Green.T C3L-05172 LSCC Methylation_Array tumor CPT0297320006 204372030127_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 80a2d955-4365-4af8-9339-fd5428c7ee06 12b515da9c06d2d57ba93a2f4b6d3746 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor"} -C3L-05172.MethArray.Red.A C3L-05172 LSCC Methylation_Array tissue_normal CPT0297360006 204367400148_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 d8e8a044-c649-4701-87c4-d174821ed388 f2f9e39a2a220f2835de4f816c4a5992 {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.MethArray.Red.T C3L-05172 LSCC Methylation_Array tumor CPT0297320006 204372030127_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 266bfa37-0b8e-4ed5-bceb-49c359fbf521 90c0d05091c04fb7908bce0383740b3d {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor"} -C3L-05172.miRNA-Seq.A.hg38 C3L-05172 LSCC miRNA-Seq tissue_normal CPT0297360009 7bc4be93-4d22-4b64-92bd-8be3b5935b6f_mirnaseq_gdc_realn.bam 279423564 BAM harmonized CPTAC3 d7ed63d6-f26e-42f3-bffd-8b1f07568b04 8477df22bfb56376479303e3588d14b0 {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.miRNA-Seq.S20_L005_R1.A C3L-05172 LSCC miRNA-Seq tissue_normal CPT0297360009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGGCC_S20_L005_R1_001.unaln.bam 251785864 BAM S20_L005_R1 unaligned CPTAC3 74fdef89-0196-4630-8ad8-b4624297d6b3 dd80b9e747dedfda5cbfaf6cd55fb28a {"aliquot_tag": "ALQ_9cd16d44", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.miRNA-Seq.S46_L007_R1.T C3L-05172 LSCC miRNA-Seq tumor CPT0297320009 200224_UNC31-K00269_0267_AHC722BBXY_TCCCGA_S46_L007_R1_001.unaln.bam 197772926 BAM S46_L007_R1 unaligned CPTAC3 13452f59-74ee-4b97-b355-c105758e6097 ed12a4ecb383745eb3c74d07c9743aeb {"aliquot_tag": "ALQ_6951cb84", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05172.miRNA-Seq.T.hg38 C3L-05172 LSCC miRNA-Seq tumor CPT0297320009 f3222863-0f84-4926-8dfd-6233c0ba92ae_mirnaseq_gdc_realn.bam 224629784 BAM harmonized CPTAC3 ae429d8c-9bcf-46f1-91e2-e358d80aa09d 26aac9bf5bc220c151173f4a70f57469 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor"} -C3L-05172.RNA-Seq.chimeric.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.chimeric.gdc_realn.bam 29938292 BAM chimeric harmonized CPTAC3 89e35627-0752-4074-b859-fdc754844467 46c42a0235d1ad8d1b0314dc198066a4 {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.RNA-Seq.chimeric.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.chimeric.gdc_realn.bam 20693545 BAM chimeric harmonized CPTAC3 77e75272-94f1-4c57-bee1-41bcda432e88 c68ef568524fccb761be5488ca04c9b9 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor"} -C3L-05172.RNA-Seq.genomic.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.genomic.gdc_realn.bam 8417953039 BAM genomic harmonized CPTAC3 a02cfa93-7bec-4f6f-90bd-4efea0036459 fe4c39da7ddbd25ae51bf527ba44a20b {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.RNA-Seq.genomic.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.genomic.gdc_realn.bam 5433973922 BAM genomic harmonized CPTAC3 420366ca-eb58-4ff6-b45c-e5456fcf2cf9 b30b202088b90826ac8a3265333e5108 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor"} -C3L-05172.RNA-Seq.S14_L004_R1.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R1_001.fastq.gz 2621957559 FASTQ S14_L004_R1 unaligned CPTAC3 f31993fe-df52-42b8-9be6-ce9297eb6d51 2f12d44b289d4fd5d57c9a0f3580074a {"aliquot_tag": "ALQ_6951cb84", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05172.RNA-Seq.S14_L004_R2.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R2_001.fastq.gz 2760954111 FASTQ S14_L004_R2 unaligned CPTAC3 bcc70605-36f2-47a9-8f4e-c6a2c97f62ce 85c577006ca647d7486975fa9cc42515 {"aliquot_tag": "ALQ_6951cb84", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05172.RNA-Seq.S3_L001_R1.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3707732955 FASTQ S3_L001_R1 unaligned CPTAC3 819fbd4a-e5f1-4d53-bbf7-8b9d3cb9565d b96dfbe5d1e90628072d6ed11df3ee6f {"aliquot_tag": "ALQ_9cd16d44", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.RNA-Seq.S3_L001_R2.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 4578052186 FASTQ S3_L001_R2 unaligned CPTAC3 209a6677-1a54-45fd-8105-9533e9e36511 07075722d1aa7b0eaa22269d645150d1 {"aliquot_tag": "ALQ_9cd16d44", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.RNA-Seq.transcriptome.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.transcriptome.gdc_realn.bam 9880563058 BAM transcriptome harmonized CPTAC3 807fce24-5a0c-4ecd-840c-4e76c846f9da b991838dbbb56f4fa441b0af5f94a491 {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.RNA-Seq.transcriptome.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.transcriptome.gdc_realn.bam 8130003921 BAM transcriptome harmonized CPTAC3 e0d3fd8f-5506-43bf-99ca-9fcee062038e 65338345048e688079a1be425cae4693 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor"} -C3L-05172.WGS.N C3L-05172 LSCC WGS blood_normal CPT0297430002 CPT0297430002.WholeGenome.RP-2158.bam 23178518008 BAM aligned CPTAC3 dc99c33b-4166-4ffd-b1b1-6a3b8163483f 64c8e01c251833dc68f6e1a3469d932b {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05172.WGS.N.hg38 C3L-05172 LSCC WGS blood_normal CPT0297430002 b9fc8052-a489-40d8-a755-bfb51c9fb52e_wgs_gdc_realn.bam 68180485289 BAM harmonized CPTAC3 68752f3f-4795-4299-ab31-8ad5af5ae616 985efc0822537676d4e1ceefef569f0d {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05172.WGS.T C3L-05172 LSCC WGS tumor CPT0297320006 CPT0297320006.WholeGenome.RP-2158.bam 29724775421 BAM aligned CPTAC3 b6cf2f2c-1fd1-4b12-a3b3-7c4914af63af 98dd7af734347d0f5d4b4631271ad048 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor"} -C3L-05172.WGS.T.hg38 C3L-05172 LSCC WGS tumor CPT0297320006 0a416131-f6b7-460a-9591-ef8ffe154266_wgs_gdc_realn.bam 86958238016 BAM harmonized CPTAC3 c15bd281-e096-402a-9482-44882e3eef7f 6e32113973ab1de5a74368371d55ba18 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor"} -C3L-05172.WXS.A C3L-05172 LSCC WXS tissue_normal CPT0297360006 CPT0297360006.WholeExome.RP-1303.bam 19195981861 BAM aligned CPTAC3 34cce4cc-ef1d-4b89-83d8-880bb93f03a4 beb8877c4f38b0dcfd3a60f8aae7b9fb {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.WXS.A.hg38 C3L-05172 LSCC WXS tissue_normal CPT0297360006 243acbe5-e915-48b0-9a17-f487b1e41dc8_wxs_gdc_realn.bam 25342397811 BAM harmonized CPTAC3 8b84f205-e154-4165-abb1-703bb4ab229b 833bdbe783fb9cc1c98abda19ddfcd66 {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05172.WXS.N C3L-05172 LSCC WXS blood_normal CPT0297430002 CPT0297430002.WholeExome.RP-1303.bam 31473073088 BAM aligned CPTAC3 5f9e1ac9-1089-43db-9f85-e2518f4498b3 846b3f77d20be84aee699fab64d1a826 {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05172.WXS.N.hg38 C3L-05172 LSCC WXS blood_normal CPT0297430002 b9fc8052-a489-40d8-a755-bfb51c9fb52e_wxs_gdc_realn.bam 43250332219 BAM harmonized CPTAC3 e6f80465-0ab7-4f1c-98dc-0d8b877fb33e eed869eb256ab36f64518c23465eb243 {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal"} -C3L-05172.WXS.T C3L-05172 LSCC WXS tumor CPT0297320006 CPT0297320006.WholeExome.RP-1303.bam 49995416534 BAM aligned CPTAC3 6a696c6b-46a8-4a0c-a201-c7241e60b918 fdee3c7e879c53cd3d2cd4af927cfff3 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor"} -C3L-05172.WXS.T.hg38 C3L-05172 LSCC WXS tumor CPT0297320006 0a416131-f6b7-460a-9591-ef8ffe154266_wxs_gdc_realn.bam 67899837993 BAM harmonized CPTAC3 30669ecb-79ab-4a97-b3d4-ef898f0a5757 af83ce125b7764a791bbc00a3dcf3d77 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor"} -C3L-05176.MethArray.Green.A C3L-05176 LSCC Methylation_Array tissue_normal CPT0297850006 204367400148_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e2abc6d1-7ba9-4657-9504-8f30362a9047 c5b88ee972bb4ed8ba6a2eb2cf5c2106 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.MethArray.Green.T C3L-05176 LSCC Methylation_Array tumor CPT0297810006 204372030127_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ee3fdee9-200d-4b02-ab3d-85cffedd6050 08268624565fb1ef14a19066e8fecbcb {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor"} -C3L-05176.MethArray.Red.A C3L-05176 LSCC Methylation_Array tissue_normal CPT0297850006 204367400148_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 8fc6a5e3-56fb-496a-9fc0-95ea59747a10 eeb963c24e00461e430c30bcad0ef7d0 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.MethArray.Red.T C3L-05176 LSCC Methylation_Array tumor CPT0297810006 204372030127_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 ae1fcac6-81f4-4ab9-90d7-f94086117301 d9cf6ae9645e55cbf67f0cc604dc1fa0 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor"} -C3L-05176.miRNA-Seq.A.hg38 C3L-05176 LSCC miRNA-Seq tissue_normal CPT0297850009 b4df2c81-2d78-49fa-a0b9-f1cff2d099bf_mirnaseq_gdc_realn.bam 212830645 BAM harmonized CPTAC3 2b972157-0a16-426b-bcc6-893817fa19aa ceeee5910fa99b3798b8d92e1b7037d5 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.miRNA-Seq.S10_L005_R1.A C3L-05176 LSCC miRNA-Seq tissue_normal CPT0297850009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGTACG_S10_L005_R1_001.unaln.bam 191035152 BAM S10_L005_R1 unaligned CPTAC3 06731481-e6ab-4f02-8ee6-0c747c496b85 d434f8d53ce6834a0201a1952d6d5622 {"aliquot_tag": "ALQ_b1b6e757", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.miRNA-Seq.S48_L007_R1.T C3L-05176 LSCC miRNA-Seq tumor CPT0297810009 200224_UNC31-K00269_0267_AHC722BBXY_TCGGCA_S48_L007_R1_001.unaln.bam 228755461 BAM S48_L007_R1 unaligned CPTAC3 f8fc81c6-ab12-44b2-a832-4b676f24ea5f d2db65bd5cb0855bfdce17d008c0a330 {"aliquot_tag": "ALQ_44364197", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05176.miRNA-Seq.T.hg38 C3L-05176 LSCC miRNA-Seq tumor CPT0297810009 0823bfb1-ba0f-4e59-a49c-ee19dadb5bcd_mirnaseq_gdc_realn.bam 257510902 BAM harmonized CPTAC3 24027047-7354-4190-b35b-336d4012dfdc 3019e74c7d4ec4465fce1c1492eabdc2 {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor"} -C3L-05176.RNA-Seq.chimeric.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.chimeric.gdc_realn.bam 28771931 BAM chimeric harmonized CPTAC3 9aefe99b-8b42-4639-adcc-5ef7e36a4996 269fbfda07968fefec6b2f5079431532 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.RNA-Seq.chimeric.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.chimeric.gdc_realn.bam 42811558 BAM chimeric harmonized CPTAC3 1e7a95ac-e704-4045-8d18-0f287d7ec099 f90a103132db05adb741333341cc53fe {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor"} -C3L-05176.RNA-Seq.genomic.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.genomic.gdc_realn.bam 7945946869 BAM genomic harmonized CPTAC3 1786f977-de2b-488d-ac3c-2c956fcb36ac 52aa5fc4763c8cccb3bc5d0f642627e2 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.RNA-Seq.genomic.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.genomic.gdc_realn.bam 10206211884 BAM genomic harmonized CPTAC3 b1d1c691-be66-4d77-941a-ad7e3d8d4a21 a54507d44d66340172378dfd12444193 {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor"} -C3L-05176.RNA-Seq.S16_L004_R1.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R1_001.fastq.gz 5137036658 FASTQ S16_L004_R1 unaligned CPTAC3 9a0bd005-e1bb-48d1-a21c-f820577a17c0 2dcf2740cabf3b98e935b8b119f2c934 {"aliquot_tag": "ALQ_44364197", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05176.RNA-Seq.S16_L004_R2.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R2_001.fastq.gz 5487723603 FASTQ S16_L004_R2 unaligned CPTAC3 a70c8433-2b36-4fd2-980d-aa7a48aeb584 7322a23e8c8ffa09af3c2f4c62c9cbcc {"aliquot_tag": "ALQ_44364197", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05176.RNA-Seq.S5_L002_R1.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R1_001.fastq.gz 3558919849 FASTQ S5_L002_R1 unaligned CPTAC3 6514b654-ce55-43d0-aef0-a041ee796908 1946ecdc176c0a7306f5bfdf9f6db864 {"aliquot_tag": "ALQ_b1b6e757", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.RNA-Seq.S5_L002_R2.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R2_001.fastq.gz 4310578591 FASTQ S5_L002_R2 unaligned CPTAC3 ab6848cd-7f4a-4034-8aae-1a79e80cc707 ed930ae0f8c374084213dae2ae754e50 {"aliquot_tag": "ALQ_b1b6e757", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.RNA-Seq.transcriptome.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.transcriptome.gdc_realn.bam 9430742472 BAM transcriptome harmonized CPTAC3 65a01918-f54d-497e-b7af-ed56d8074f2e a84e0defb5124a46991dc24ed0fbfe34 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.RNA-Seq.transcriptome.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.transcriptome.gdc_realn.bam 14166215101 BAM transcriptome harmonized CPTAC3 a3e497c8-fd40-4041-a45b-3c4d47bb7f04 83d763d36f07eaa20c18446a158310fc {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor"} -C3L-05176.WGS.N C3L-05176 LSCC WGS blood_normal CPT0297920002 CPT0297920002.WholeGenome.RP-2158.bam 29225582987 BAM aligned CPTAC3 156826c1-8077-43a5-a20f-d922277786cc 633ebc16cc7d7e68a7672ca996926c06 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05176.WGS.N C3L-05176 LSCC WGS blood_normal CPT0297920002 CPT0297920002.WholeGenome.RP-2158.bam 29269475686 BAM aligned CPTAC3 9537f307-3a43-4e73-b368-57469bba720d a2178da93f50120aedb702373cd10df8 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05176.WGS.N.hg38 C3L-05176 LSCC WGS blood_normal CPT0297920002 264ca255-c027-4787-a706-2a38e4fe0aac_wgs_gdc_realn.bam 87749442541 BAM harmonized CPTAC3 0b6ccfaf-52b0-4cf5-a8ce-3511b17f0065 d034a3a6f1a717b27cca5a332d731630 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05176.WGS.T C3L-05176 LSCC WGS tumor CPT0297810006 CPT0297810006.WholeGenome.RP-2158.bam 25526132758 BAM aligned CPTAC3 e7142303-d0a3-4928-a756-ab00e9bd88b8 e9fab4a4f9dc7beff441e96717efe82d {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor"} -C3L-05176.WGS.T.hg38 C3L-05176 LSCC WGS tumor CPT0297810006 7132ca08-c95c-4cd9-83b7-3cf6bfbfa2cf_wgs_gdc_realn.bam 74038074122 BAM harmonized CPTAC3 c0c48786-513b-4ad2-838d-21269fa48404 9fee5ed6fc29eceb3a2c92cf9a8e41c6 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor"} -C3L-05176.WXS.A C3L-05176 LSCC WXS tissue_normal CPT0297850006 CPT0297850006.WholeExome.RP-1303.bam 20000359769 BAM aligned CPTAC3 537135fc-bb55-42ac-afb7-fead2451ac75 11f96929fd02051a3abfd1dc93c513c5 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.WXS.A.hg38 C3L-05176 LSCC WXS tissue_normal CPT0297850006 f4ea0e7f-795c-48d6-adcb-77e0a31ecc07_wxs_gdc_realn.bam 26725401058 BAM harmonized CPTAC3 ed1aacd8-9ea8-4b45-a46a-35ee3c78956e db6e6519a805de5d2f418d3231998a29 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05176.WXS.N C3L-05176 LSCC WXS blood_normal CPT0297920002 CPT0297920002.WholeExome.RP-1303.bam 29055113175 BAM aligned CPTAC3 a868fc10-fef3-4508-9467-5095fcd12c17 34d77950d79b788b421de08b87044c0a {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05176.WXS.N.hg38 C3L-05176 LSCC WXS blood_normal CPT0297920002 264ca255-c027-4787-a706-2a38e4fe0aac_wxs_gdc_realn.bam 39721052579 BAM harmonized CPTAC3 588f5cbd-4d7b-41b8-bd6a-7cbd3f4177d9 5f589dc09b4ea2807285ee909d4fada0 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05176.WXS.T C3L-05176 LSCC WXS tumor CPT0297810006 CPT0297810006.WholeExome.RP-1303.bam 34419652620 BAM aligned CPTAC3 20c2298a-f94b-4327-9976-4a391e0f87e2 40963ea8b4ae3631e75fb914e8d23955 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor"} -C3L-05176.WXS.T.hg38 C3L-05176 LSCC WXS tumor CPT0297810006 7132ca08-c95c-4cd9-83b7-3cf6bfbfa2cf_wxs_gdc_realn.bam 48289991580 BAM harmonized CPTAC3 16cd5c8a-bb98-466a-acc8-c3fdc69677ba 998c80614f7ca93786ae0bffa73bf7c5 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor"} -C3L-05212.MethArray.Green.A C3L-05212 LSCC Methylation_Array tissue_normal CPT0296760006 204367490048_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 18c87ff3-9152-4260-97ba-7245a1f45593 fbcd6e4f54d887a14627effd61e19414 {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.MethArray.Green.T C3L-05212 LSCC Methylation_Array tumor CPT0296710006 204367400148_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 9bba17cc-0dce-4e18-a35a-68972aa975f6 69b7812f5f1cb742ea465116c5ffe250 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor"} -C3L-05212.MethArray.Red.A C3L-05212 LSCC Methylation_Array tissue_normal CPT0296760006 204367490048_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 ae7edef1-c1d7-4032-bb46-6c2f9b9a46d5 8cf1c6d0f48b7850b8a6f2b1f47e93ad {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.MethArray.Red.T C3L-05212 LSCC Methylation_Array tumor CPT0296710006 204367400148_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 b2d373c6-96cd-421e-b4c5-c65779ce9af7 18ee75a7fd0ab053cc2c21902208f601 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor"} -C3L-05212.miRNA-Seq.A.hg38 C3L-05212 LSCC miRNA-Seq tissue_normal CPT0296760009 dde2fde7-62b3-4480-a126-04b9f20b4462_mirnaseq_gdc_realn.bam 263072653 BAM harmonized CPTAC3 5df75c12-420b-4cd5-9428-ea3e98c7c552 1696d895b628ced73cd8195146892ddb {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.miRNA-Seq.S18_L005_R1.A C3L-05212 LSCC miRNA-Seq tissue_normal CPT0296760009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTCCGC_S18_L005_R1_001.unaln.bam 235665526 BAM S18_L005_R1 unaligned CPTAC3 f0c1c5fb-b8a4-4238-8621-dddb8697160f 8de8de1d9b28962b6725fcfdb0181848 {"aliquot_tag": "ALQ_a13724e6", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.miRNA-Seq.S44_L007_R1.T C3L-05212 LSCC miRNA-Seq tumor CPT0296710009 200224_UNC31-K00269_0267_AHC722BBXY_TATAAT_S44_L007_R1_001.unaln.bam 291326509 BAM S44_L007_R1 unaligned CPTAC3 c31a76c1-3ed6-4572-93c9-a0a987c03424 5b560e3ae988847626bdeda6ec194c7d {"aliquot_tag": "ALQ_1317f8f6", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05212.miRNA-Seq.T.hg38 C3L-05212 LSCC miRNA-Seq tumor CPT0296710009 6b4d3edf-2a93-4970-a3de-f80cad4feb82_mirnaseq_gdc_realn.bam 317091984 BAM harmonized CPTAC3 00ffb5ed-4fba-4d1b-bca4-f802eec34c29 5d4fe1574a0389ab85e481a02b41a0f0 {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor"} -C3L-05212.RNA-Seq.chimeric.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.chimeric.gdc_realn.bam 36577303 BAM chimeric harmonized CPTAC3 bfe63e7c-4363-4d52-95d9-2c3b46291e93 a1f670386b65eb6b78f2db0018e59916 {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.RNA-Seq.chimeric.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.chimeric.gdc_realn.bam 45814527 BAM chimeric harmonized CPTAC3 202c3753-b57c-47e0-b39a-13f997ecd26f b2f7477cc4b67242a437544fa98b40ea {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor"} -C3L-05212.RNA-Seq.genomic.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.genomic.gdc_realn.bam 9311061790 BAM genomic harmonized CPTAC3 bd4f8ef1-bce2-4772-8438-a8dc047aa56b 55ba70765fe66e2f0678362b6668bd3f {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.RNA-Seq.genomic.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.genomic.gdc_realn.bam 11337502388 BAM genomic harmonized CPTAC3 88d9fbc2-9b74-480c-8109-d0d72292a490 1b110f3c009b57a0f0ccb855a82bc5be {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor"} -C3L-05212.RNA-Seq.S27_L003_R1.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R1_001.fastq.gz 5371243966 FASTQ S27_L003_R1 unaligned CPTAC3 749d881c-92f4-4ba1-8a5d-3b95fa4a5938 6dff6b2c18ff8a15bd5339ca3054d1da {"aliquot_tag": "ALQ_1317f8f6", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05212.RNA-Seq.S27_L003_R2.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R2_001.fastq.gz 6365162923 FASTQ S27_L003_R2 unaligned CPTAC3 65ebc622-bb9d-4a16-a8e3-4bc1ddbfde3d fc0014ce369cfacd334c6ad4659877ab {"aliquot_tag": "ALQ_1317f8f6", "sample": "S27", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05212.RNA-Seq.S2_L001_R1.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 4085267116 FASTQ S2_L001_R1 unaligned CPTAC3 e649107d-a626-49b3-94b4-c455ab9f0139 6f34d7023b44e1cc75b2b5a1f9de5329 {"aliquot_tag": "ALQ_a13724e6", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.RNA-Seq.S2_L001_R2.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 5169036395 FASTQ S2_L001_R2 unaligned CPTAC3 fa735290-d0e0-456f-b2aa-e48b0b39a19d 51974718c1b14b499d8c774a84c066f6 {"aliquot_tag": "ALQ_a13724e6", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.RNA-Seq.transcriptome.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.transcriptome.gdc_realn.bam 11226861746 BAM transcriptome harmonized CPTAC3 6a7c434e-f270-4c31-9a34-ebb905e00e07 490fec8f52d1bc5d0ed89eb55112ff24 {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.RNA-Seq.transcriptome.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.transcriptome.gdc_realn.bam 15275340000 BAM transcriptome harmonized CPTAC3 109fe0c1-f35e-4bd1-998f-545108af5a80 54d3af2e3a94854ce5d0a62f5cf2debe {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor"} -C3L-05212.WGS.N C3L-05212 LSCC WGS blood_normal CPT0296830002 CPT0296830002.WholeGenome.RP-2158.bam 22568046114 BAM aligned CPTAC3 bd31848e-ef07-4d14-a60b-b63e4039e1bc 2ad9c885dfaff36bdbe6b524eca7e275 {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05212.WGS.N.hg38 C3L-05212 LSCC WGS blood_normal CPT0296830002 bf747777-536e-4fc9-bac9-e55b29857ab1_wgs_gdc_realn.bam 67352781148 BAM harmonized CPTAC3 730b7bba-f95b-41c5-9280-824de58d9c4d 981939eb35815e60c0a87f06e4eeb65f {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05212.WGS.T C3L-05212 LSCC WGS tumor CPT0296710006 CPT0296710006.WholeGenome.RP-2158.bam 20184063318 BAM aligned CPTAC3 40904e59-e895-41d1-9207-4374cb0b9c3d ba5a5a2b4b2992aabd62123cdb1fe9c1 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor"} -C3L-05212.WGS.T.hg38 C3L-05212 LSCC WGS tumor CPT0296710006 437c43df-b54f-4e38-adbb-0d6f941261a0_wgs_gdc_realn.bam 59590387959 BAM harmonized CPTAC3 cab17baa-cddb-4a5b-8112-f12d52e71b88 36bff901b5872030f76a4183792ace1d {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor"} -C3L-05212.WXS.A C3L-05212 LSCC WXS tissue_normal CPT0296760006 CPT0296760006.WholeExome.RP-1303.bam 24078532732 BAM aligned CPTAC3 ccca121a-8694-4234-86d9-93a718bb17f1 fc07109987d2868aa848bb4ce565510e {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.WXS.A.hg38 C3L-05212 LSCC WXS tissue_normal CPT0296760006 446eb78c-af82-4b69-b446-fb5b53c07017_wxs_gdc_realn.bam 32591641037 BAM harmonized CPTAC3 7038eadd-81fc-4bd7-ada7-dd21aead704b 642c38748069d7af35bf519d6cb41d10 {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05212.WXS.N C3L-05212 LSCC WXS blood_normal CPT0296830002 CPT0296830002.WholeExome.RP-1303.bam 22491075979 BAM aligned CPTAC3 7a1e8cec-2e2e-4e67-97d6-0556ba0f1df2 449d059123b48f21c3abde3eb1a31822 {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05212.WXS.N.hg38 C3L-05212 LSCC WXS blood_normal CPT0296830002 bf747777-536e-4fc9-bac9-e55b29857ab1_wxs_gdc_realn.bam 30197138849 BAM harmonized CPTAC3 81d5790d-37b9-4ff7-9cfc-dcb12d4907b9 3dc081014e72889a1ecd910b7a95ac8c {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05212.WXS.T C3L-05212 LSCC WXS tumor CPT0296710006 CPT0296710006.WholeExome.RP-1303.bam 23604910148 BAM aligned CPTAC3 e0a57216-ddf9-4370-9278-5f5d920a2b5a 81cf3653ea0a35ec23dd5cfcfb5c5407 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor"} -C3L-05212.WXS.T.hg38 C3L-05212 LSCC WXS tumor CPT0296710006 437c43df-b54f-4e38-adbb-0d6f941261a0_wxs_gdc_realn.bam 32311960857 BAM harmonized CPTAC3 28dd0d6c-7fae-42dc-9930-5bdbdacf8338 1cd9484fc9844e051de161ef7fe5c5ac {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor"} -C3L-05221.MethArray.Green.A C3L-05221 LSCC Methylation_Array tissue_normal CPT0298170006 204367490030_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0abec1b5-28e1-4115-90cf-20ea49d8b65f 799f34c9f0fdb511dce7191647e418d3 {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.MethArray.Green.T C3L-05221 LSCC Methylation_Array tumor CPT0298140006 204372030070_R06C01_Grn.idat 13677904 IDAT Green NA CPTAC3 e38b5e06-de36-44aa-9d90-913381be4475 205fb830ed2530ae9ef2e685ee292a7f {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor"} -C3L-05221.MethArray.Red.A C3L-05221 LSCC Methylation_Array tissue_normal CPT0298170006 204367490030_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 b0f07918-48eb-47e2-bb24-5e5bd1f0c1c0 3686679ca095ed533597fbd1d4cc1e1c {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.MethArray.Red.T C3L-05221 LSCC Methylation_Array tumor CPT0298140006 204372030070_R06C01_Red.idat 13677904 IDAT Red NA CPTAC3 19739f8c-2983-4b17-9171-1e42e4df67a4 c5f3c9911bb9a7aaff13402b293ad87f {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor"} -C3L-05221.miRNA-Seq.A.hg38 C3L-05221 LSCC miRNA-Seq tissue_normal CPT0298170009 c196831a-1a99-4dc9-b365-e29021961b62_mirnaseq_gdc_realn.bam 294895764 BAM harmonized CPTAC3 c3049936-7ad8-4a12-befc-c607e0985cff ebbab817fcb96fd190bd77672210710e {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.miRNA-Seq.S12_L005_R1.A C3L-05221 LSCC miRNA-Seq tissue_normal CPT0298170009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GAGTGG_S12_L005_R1_001.unaln.bam 257197536 BAM S12_L005_R1 unaligned CPTAC3 ec5d15d5-a3f0-43c7-932c-9d95e92eb471 291f38405f8c505aeaa4ac68e50e1482 {"aliquot_tag": "ALQ_1a319516", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.miRNA-Seq.S1_L006_R1.T C3L-05221 LSCC miRNA-Seq tumor CPT0298140009 200224_UNC31-K00269_0267_AHC722BBXY_ATCACG_S1_L006_R1_001.unaln.bam 206646803 BAM S1_L006_R1 unaligned CPTAC3 dff2e1d3-37c3-4658-8796-3b68c6595d2f 926225a8c8d8d1e34783447b7b67db02 {"aliquot_tag": "ALQ_5d91efc6", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05221.miRNA-Seq.T.hg38 C3L-05221 LSCC miRNA-Seq tumor CPT0298140009 c37de72e-2f9b-4fed-8fac-218feffcfb2d_mirnaseq_gdc_realn.bam 224476452 BAM harmonized CPTAC3 07ee17cb-e3aa-41c1-842a-0c710374c2cd 323b1dea1450eb0b58bdf1d79a3b2309 {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor"} -C3L-05221.RNA-Seq.chimeric.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.chimeric.gdc_realn.bam 29441197 BAM chimeric harmonized CPTAC3 c77def87-f7ba-4186-a66f-9c0282b0affb d15c0c56471f9ac58163c07ac1dbed3e {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.RNA-Seq.chimeric.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.chimeric.gdc_realn.bam 61650923 BAM chimeric harmonized CPTAC3 32ef953d-577e-4836-bf5e-de96cf8a9171 83c8675bd26af4b61df5d06ed87f8341 {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor"} -C3L-05221.RNA-Seq.genomic.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.genomic.gdc_realn.bam 8212186078 BAM genomic harmonized CPTAC3 d0cd19d6-4dc0-410c-8d03-36df4e521bf7 278ac783ad9eb0461eb141e59b9b5b61 {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.RNA-Seq.genomic.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.genomic.gdc_realn.bam 9376065416 BAM genomic harmonized CPTAC3 9e515b60-c193-49e0-a352-5ab4e043b528 ca7eeccaf39e2e13bd4888b299fa8957 {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor"} -C3L-05221.RNA-Seq.S17_L005_R1.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R1_001.fastq.gz 4646995701 FASTQ S17_L005_R1 unaligned CPTAC3 f8f144f4-7082-4c4e-bbfc-422b4dfebf80 e0ea6adf4d9090de329c7025c7da07d6 {"aliquot_tag": "ALQ_5d91efc6", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05221.RNA-Seq.S17_L005_R2.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R2_001.fastq.gz 4922576827 FASTQ S17_L005_R2 unaligned CPTAC3 ef16c400-6f72-4338-943e-25fe26327a3d 83c78f0346e1cd2b010bcfa360d5158f {"aliquot_tag": "ALQ_5d91efc6", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05221.RNA-Seq.S7_L002_R1.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 3650803514 FASTQ S7_L002_R1 unaligned CPTAC3 fe41e3b3-3dfe-471a-909c-0cf299ff0708 9c8b748ef62ccceadadb70b7f4c80b87 {"aliquot_tag": "ALQ_1a319516", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.RNA-Seq.S7_L002_R2.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 4367339220 FASTQ S7_L002_R2 unaligned CPTAC3 7650893e-2e98-4ac1-adbb-1e02d942a61d 733a3fab6e7528cc415c3623e1167fb4 {"aliquot_tag": "ALQ_1a319516", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.RNA-Seq.transcriptome.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.transcriptome.gdc_realn.bam 9227753472 BAM transcriptome harmonized CPTAC3 cadb1d9c-1348-41e9-b03b-a7c3c46667ee 842f271c9e0ccc161f74eabe2ba0e6d9 {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.RNA-Seq.transcriptome.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.transcriptome.gdc_realn.bam 13212002583 BAM transcriptome harmonized CPTAC3 c51b3a7d-bc2a-4725-8306-c105545a187b f175fba879cc2f070abd95b291eab41b {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor"} -C3L-05221.WGS.N C3L-05221 LSCC WGS blood_normal CPT0298260002 CPT0298260002.WholeGenome.RP-2158.bam 22543254031 BAM aligned CPTAC3 6fc63f53-736e-4508-8f63-fd2228c5c161 af9a936f245fb8331427f1437e0d111e {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal"} -C3L-05221.WGS.N.hg38 C3L-05221 LSCC WGS blood_normal CPT0298260002 7efd2357-2f36-4670-a8ab-4ec4a050505c_wgs_gdc_realn.bam 66900222214 BAM harmonized CPTAC3 bc4fff91-13c2-4c76-b669-6f556586d88e 39c3ac32b2328ef22d2864da975d06f5 {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal"} -C3L-05221.WGS.T C3L-05221 LSCC WGS tumor CPT0298140006 CPT0298140006.WholeGenome.RP-2158.bam 26197423404 BAM aligned CPTAC3 8c282023-004c-43b1-95e6-e441ac94356e 8cdfcfd6bb4bb0dce5029a55c9389177 {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor"} -C3L-05221.WGS.T.hg38 C3L-05221 LSCC WGS tumor CPT0298140006 9bce91ec-f097-488c-9886-3163d276fbb8_wgs_gdc_realn.bam 77795009663 BAM harmonized CPTAC3 72499411-41a2-4232-a610-13c98262b69e 7855edacfb8517960464be9557d5fa56 {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor"} -C3L-05221.WXS.A C3L-05221 LSCC WXS tissue_normal CPT0298170006 CPT0298170006.WholeExome.RP-1303.bam 20840313599 BAM aligned CPTAC3 cc3f2cef-cdb2-4998-9875-6b15f0295d66 b6371335b40542b9cfe7741383ed08e4 {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.WXS.A.hg38 C3L-05221 LSCC WXS tissue_normal CPT0298170006 62a0c6ee-5d54-47d4-844e-56764982a7ef_wxs_gdc_realn.bam 27828402850 BAM harmonized CPTAC3 08e9d74c-0e3d-47c8-b6f9-68787a026e4c 18bf23b656400ecbb3e8ca0805d770be {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05221.WXS.N C3L-05221 LSCC WXS blood_normal CPT0298260002 CPT0298260002.WholeExome.RP-1303.bam 32315288661 BAM aligned CPTAC3 b18d9853-dab7-476b-b102-1319c3b66d54 b976b11d36ac61690b94f4d393e50e82 {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal"} -C3L-05221.WXS.N.hg38 C3L-05221 LSCC WXS blood_normal CPT0298260002 7efd2357-2f36-4670-a8ab-4ec4a050505c_wxs_gdc_realn.bam 43742388791 BAM harmonized CPTAC3 cac12ff1-9cf3-4ac9-a7dd-2adb8cd0a538 46dfb640e10559eb7f9d40ca0546d5cf {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal"} -C3L-05221.WXS.T C3L-05221 LSCC WXS tumor CPT0298140006 CPT0298140006.WholeExome.RP-1303.bam 20914443903 BAM aligned CPTAC3 47b2be8a-9dca-4a1b-88d0-886683fc7d53 1504c114940bf4898e3cf082ed9a8c8e {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor"} -C3L-05221.WXS.T.hg38 C3L-05221 LSCC WXS tumor CPT0298140006 9bce91ec-f097-488c-9886-3163d276fbb8_wxs_gdc_realn.bam 29170127974 BAM harmonized CPTAC3 384f17ce-d923-492a-8797-6a1cc214d6e4 a1b7c01709fa667d0e8ba34b4bd3a9ee {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor"} -C3L-05225.MethArray.Green.A C3L-05225 LSCC Methylation_Array tissue_normal CPT0296620006 204367490043_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fc70153c-f564-4189-9e4f-f282dffc8bb6 80811a722f6208be12aa6e4847142f7b {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.MethArray.Green.T C3L-05225 LSCC Methylation_Array tumor CPT0296570006 204367470127_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 e0e28bb1-5e9a-41f0-b768-4751b24678cd 2218201771da8148edfdf8651cce1705 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor"} -C3L-05225.MethArray.Red.A C3L-05225 LSCC Methylation_Array tissue_normal CPT0296620006 204367490043_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 962c368a-e66f-4fdd-a327-191bade4ad46 b1680b921cb1ad13c8cd54b5a17a4de0 {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.MethArray.Red.T C3L-05225 LSCC Methylation_Array tumor CPT0296570006 204367470127_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 489ddbdd-0ac6-4dee-b207-57348b451a9f 7fd7c10b6ff475430587c95161db8027 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor"} -C3L-05225.miRNA-Seq.A.hg38 C3L-05225 LSCC miRNA-Seq tissue_normal CPT0296620009 c3edcb7c-7d8f-4592-8110-6a612c194ed1_mirnaseq_gdc_realn.bam 241073081 BAM harmonized CPTAC3 72c885d8-c0e3-4280-9a23-79b869f4587b 7d2947180819212272477aeccaffb8cc {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.miRNA-Seq.S17_L005_R1.A C3L-05225 LSCC miRNA-Seq tissue_normal CPT0296620009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTAGAG_S17_L005_R1_001.unaln.bam 214693904 BAM S17_L005_R1 unaligned CPTAC3 382f9835-1260-45bc-b737-9e11cdd1be4f 12dbd31fea9ae888825f91866646d411 {"aliquot_tag": "ALQ_9feb5183", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.miRNA-Seq.S43_L007_R1.T C3L-05225 LSCC miRNA-Seq tumor CPT0296570009 200224_UNC31-K00269_0267_AHC722BBXY_TACAGC_S43_L007_R1_001.unaln.bam 209078641 BAM S43_L007_R1 unaligned CPTAC3 dcd7b867-b5ef-40cd-bd22-11ea8393c1df 6a4432dcfcf943dd8120c725660a6ea6 {"aliquot_tag": "ALQ_d19fac5d", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05225.miRNA-Seq.T.hg38 C3L-05225 LSCC miRNA-Seq tumor CPT0296570009 fa422711-a088-4ddc-b5c3-05158f13e275_mirnaseq_gdc_realn.bam 231859610 BAM harmonized CPTAC3 4bcd04dd-cd7e-412d-b407-db8cba3bd8b8 2f7ebf51b9d250f2fe790d8a73491f4d {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor"} -C3L-05225.RNA-Seq.chimeric.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.chimeric.gdc_realn.bam 31339617 BAM chimeric harmonized CPTAC3 425a7e66-8c7c-4f51-9f67-19d81880a742 b3bea689129dfa81e29a1ccfafd934b8 {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.RNA-Seq.chimeric.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.chimeric.gdc_realn.bam 30139205 BAM chimeric harmonized CPTAC3 7585ca0c-9528-4e92-b7f8-463da4f28e74 af7fb669a052ddea3ea3061470110055 {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor"} -C3L-05225.RNA-Seq.genomic.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.genomic.gdc_realn.bam 7620994435 BAM genomic harmonized CPTAC3 10bb42a9-074a-4f9c-8da1-2d8a0bfaf4b8 028550ed221cc9d2db6fbdc68cb5f11c {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.RNA-Seq.genomic.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.genomic.gdc_realn.bam 7706301994 BAM genomic harmonized CPTAC3 6f7a3fdc-c20e-4e04-97fb-ffba0d50e074 a07f8d9974f57efe77c8bad433e21ec9 {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor"} -C3L-05225.RNA-Seq.S11_L003_R1.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R1_001.fastq.gz 3827548599 FASTQ S11_L003_R1 unaligned CPTAC3 e06570ec-7adf-4b8e-80ff-f70a7eec89b0 67663c6fefe4d4073c1a73b5702e5328 {"aliquot_tag": "ALQ_d19fac5d", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05225.RNA-Seq.S11_L003_R2.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R2_001.fastq.gz 4049671016 FASTQ S11_L003_R2 unaligned CPTAC3 383d18bb-9260-4acc-a5b3-6e80e90d638c 0ae1740c194e6d5d1b2ea84ef1b0057c {"aliquot_tag": "ALQ_d19fac5d", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05225.RNA-Seq.S4_L001_R1.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R1_001.fastq.gz 3442419307 FASTQ S4_L001_R1 unaligned CPTAC3 63c26280-83e5-40ef-90fa-dea67fca8d54 3b585578bc90a18e52d864419d0879a3 {"aliquot_tag": "ALQ_9feb5183", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.RNA-Seq.S4_L001_R2.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R2_001.fastq.gz 4166052663 FASTQ S4_L001_R2 unaligned CPTAC3 2656afbf-4bb5-47df-882d-696754d8467c 974a43467ca2811f8eaa5eb525612995 {"aliquot_tag": "ALQ_9feb5183", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.RNA-Seq.transcriptome.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.transcriptome.gdc_realn.bam 8796588183 BAM transcriptome harmonized CPTAC3 998484b4-3146-4a19-a297-16933f297b27 c4d81da0bbf2bb567b6b69ad41fce4d5 {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.RNA-Seq.transcriptome.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.transcriptome.gdc_realn.bam 11963071123 BAM transcriptome harmonized CPTAC3 612a7d94-58bb-4ea2-886b-5361aa6d12da 70c812d55a896c700d3e7579a006bb8c {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor"} -C3L-05225.WGS.N C3L-05225 LSCC WGS blood_normal CPT0296690002 CPT0296690002.WholeGenome.RP-2158.bam 24312447365 BAM aligned CPTAC3 a82d3175-e8fd-49cc-9690-82aaf509900c f7a0efcc5025ea374d50d01484a13186 {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05225.WGS.N C3L-05225 LSCC WGS blood_normal CPT0296690002 CPT0296690002.WholeGenome.RP-2158.bam 24349130461 BAM aligned CPTAC3 8b8d2e54-0b9f-4416-9222-064df84934f2 8f36aba81e2c64ba144afde152f85b32 {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05225.WGS.N.hg38 C3L-05225 LSCC WGS blood_normal CPT0296690002 3b73345c-6a2e-4042-8cc9-0e55329d9058_wgs_gdc_realn.bam 72783765413 BAM harmonized CPTAC3 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 2b73c8fd0115445950fac62db5f6bce3 {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05225.WGS.T C3L-05225 LSCC WGS tumor CPT0296570006 CPT0296570006.WholeGenome.RP-2158.bam 24721244623 BAM aligned CPTAC3 09238d79-48b5-4c48-9bb2-1d590a96fdb7 186acfe93838890615d3a7cd95cea1d9 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor"} -C3L-05225.WGS.T.hg38 C3L-05225 LSCC WGS tumor CPT0296570006 81cdcf02-73f2-42cc-9306-818c9c6869ae_wgs_gdc_realn.bam 72293079183 BAM harmonized CPTAC3 03956b75-1a7a-4dda-aec7-6efa70957bc1 20bc654bb10d11a16ace40fbda068dc8 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor"} -C3L-05225.WXS.A C3L-05225 LSCC WXS tissue_normal CPT0296620006 CPT0296620006.WholeExome.RP-1303.bam 34160697217 BAM aligned CPTAC3 d51787a4-cf91-41ca-a2ce-308282e93fd0 fccbccbac01a2184672cc2a8075281ea {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.WXS.A.hg38 C3L-05225 LSCC WXS tissue_normal CPT0296620006 47465d24-0a65-4c31-958c-92fd92644dbd_wxs_gdc_realn.bam 47004252667 BAM harmonized CPTAC3 d88bfb84-810b-41dd-9a57-842c4047a2bb 9a721cb577a64a0e70c8f375145aeb93 {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05225.WXS.N C3L-05225 LSCC WXS blood_normal CPT0296690002 CPT0296690002.WholeExome.RP-1303.bam 23421613179 BAM aligned CPTAC3 ff3e74d6-38f7-47cb-8ac2-ab3179fab838 c94fcc8a130221e9936adcfe21f14a6f {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05225.WXS.N.hg38 C3L-05225 LSCC WXS blood_normal CPT0296690002 3b73345c-6a2e-4042-8cc9-0e55329d9058_wxs_gdc_realn.bam 32473818430 BAM harmonized CPTAC3 19f20d7b-086d-4040-9f9c-dd17e2fe5017 efbebb2966aedd825c30d15513d67e6c {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05225.WXS.T C3L-05225 LSCC WXS tumor CPT0296570006 CPT0296570006.WholeExome.RP-1303.bam 19475882881 BAM aligned CPTAC3 987e1444-ba3d-41f6-b6c2-ed0e9392416f 20deaa0b8dbf19f272d23fa389b477d3 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor"} -C3L-05225.WXS.T.hg38 C3L-05225 LSCC WXS tumor CPT0296570006 81cdcf02-73f2-42cc-9306-818c9c6869ae_wxs_gdc_realn.bam 26692348336 BAM harmonized CPTAC3 cff5ad7d-816f-4f8f-b919-f96dbac7cbe2 b500bdf342dad6eafce479c71e67f1ab {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor"} -C3L-05239.MethArray.Green.T C3L-05239 GBM Methylation_Array tumor CPT0346710006 204930640083_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 226f5aee-f475-42e4-97b9-88fa6b51c92f 6889df0f9206dd1e4cf16d995314ad56 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor"} -C3L-05239.MethArray.Red.T C3L-05239 GBM Methylation_Array tumor CPT0346710006 204930640083_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 22d11f1e-80cd-4521-84c0-8cf623ec19fc 81df0570b493ef831814ea12a6fb2176 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor"} -C3L-05239.miRNA-Seq.S23_L007_R1.T C3L-05239 GBM miRNA-Seq tumor CPT0346710009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTTGA_S23_L007_R1_001.unaln.bam 218458045 BAM S23_L007_R1 unaligned CPTAC3 9dea0013-93dc-4c87-bdc8-bc98d18238bf 4089d0052e0ac168b4411703515ed4b0 {"aliquot_tag": "ALQ_9f69f964", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05239.miRNA-Seq.T.hg38 C3L-05239 GBM miRNA-Seq tumor CPT0346710009 bc919f06-ae10-44e3-8218-f88fb03e2a9d_mirnaseq_gdc_realn.bam 251913789 BAM harmonized CPTAC3 a5ad09b9-b8a1-4f61-9ab2-50d7e363db09 806b9d9260508fd091e4716b54f94152 {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor"} -C3L-05239.RNA-Seq.chimeric.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.chimeric.gdc_realn.bam 72939404 BAM chimeric harmonized CPTAC3 95f1ed81-a1da-4e5b-801e-a17a0936856b c4bd68e2257069797b3388305021cd87 {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor"} -C3L-05239.RNA-Seq.genomic.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.genomic.gdc_realn.bam 7856464192 BAM genomic harmonized CPTAC3 3de099eb-d3fb-47b0-9fb6-955a5c291dcb a4e9a6a99f6a120d707794d21b0489af {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor"} -C3L-05239.RNA-Seq.S4_L001_R1.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ S4_L001_R1 unaligned CPTAC3 8161f3a1-1b1a-442f-aaf3-faabd976c99a 017652ccbf783557146fac20f6b01bfe {"aliquot_tag": "ALQ_9f69f964", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05239.RNA-Seq.S4_L001_R2.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ S4_L001_R2 unaligned CPTAC3 b2cc1d59-536e-4c59-89df-f6808282e91f caab0a5abb6f92364ade534073d9ad61 {"aliquot_tag": "ALQ_9f69f964", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05239.RNA-Seq.transcriptome.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.transcriptome.gdc_realn.bam 9662306410 BAM transcriptome harmonized CPTAC3 80694eea-cf08-49d6-8b87-1967867fb091 a4367b85c6c52c5cec2623f3e0ce71a6 {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor"} -C3L-05239.WGS.N C3L-05239 GBM WGS blood_normal CPT0346770002 CPT0346770002.WholeGenome.RP-2158.bam 24306484177 BAM aligned CPTAC3 f50882a9-ba11-46d8-8ae1-b3db9fe73ca6 9e50f542d916427f958a5d28b4fafbd1 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal"} -C3L-05239.WGS.N.hg38 C3L-05239 GBM WGS blood_normal CPT0346770002 445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 69573503614 BAM harmonized CPTAC3 74558bd0-2f33-412a-acc6-0274e7abf989 592e4c0fb664a87b17148297475e7236 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal"} -C3L-05239.WGS.T C3L-05239 GBM WGS tumor CPT0346710006 CPT0346710006.WholeGenome.RP-2158.bam 23404612085 BAM aligned CPTAC3 5f728e2a-492a-4fd8-b33a-3cfd30bba9cf 0e484ffc3e5d09555523e7ddc81bd1f4 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor"} -C3L-05239.WGS.T.hg38 C3L-05239 GBM WGS tumor CPT0346710006 7afb0ddf-9395-4033-a349-4d98081ffbe8_wgs_gdc_realn.bam 68789425438 BAM harmonized CPTAC3 ec7424a2-cc70-4745-8abf-830399c53864 38fefd4fd6d70209af73470f73c65426 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor"} -C3L-05239.WXS.N C3L-05239 GBM WXS blood_normal CPT0346770002 CPT0346770002.WholeExome.RP-1303.bam 19041494244 BAM aligned CPTAC3 e8806b58-3c7b-4542-bba9-fb85d3bcd231 6597ef1065aad1aa88005ad879145822 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal"} -C3L-05239.WXS.N.hg38 C3L-05239 GBM WXS blood_normal CPT0346770002 445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wxs_gdc_realn.bam 25443004274 BAM harmonized CPTAC3 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb 194348106658a2114010e8684763c283 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal"} -C3L-05239.WXS.T C3L-05239 GBM WXS tumor CPT0346710006 CPT0346710006.WholeExome.RP-1303.bam 18743445741 BAM aligned CPTAC3 12ae1706-4063-446f-931a-67559587801f 1578bf468e186202b42f5367283f3647 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor"} -C3L-05239.WXS.T.hg38 C3L-05239 GBM WXS tumor CPT0346710006 7afb0ddf-9395-4033-a349-4d98081ffbe8_wxs_gdc_realn.bam 25755214142 BAM harmonized CPTAC3 73dcd24f-0fde-46b2-a48b-11f402c43c99 c81d319fc4c41491f322ebac125befcf {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor"} -C3L-05313.MethArray.Green.Tbm C3L-05313 AML Methylation_Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9e98c5b1-2086-4e5a-8b12-30aafe032714 a813f48a25061f5701bb57d02dde6ea8 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.MethArray.Red.Tbm C3L-05313 AML Methylation_Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 f5035698-fc64-4ca3-b505-56bed0caa3a2 875dc99237001389f8a6b13cb0459a0b {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.miRNA-Seq.S31_L007_R1.Tbm C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGAAG_S31_L007_R1_001.unaln.bam 405396432 BAM S31_L007_R1 unaligned CPTAC3 ec6361e3-7777-40c7-8e73-38739400b11a 9f0e2b6ad6e42f549b2c3911a0b3dd36 {"aliquot_tag": "ALQ_898eb3d6", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.miRNA-Seq.Tbm.hg38 C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 97ad778f-cd64-4652-a373-63179a34d3c2_mirnaseq_gdc_realn.bam 437640768 BAM harmonized CPTAC3 0873d890-6ef0-4f16-a8b1-bc97f7c23218 7d6ac3aca35c72a47aba91c9ee35ea83 {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.RNA-Seq.chimeric.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.chimeric.gdc_realn.bam 132251437 BAM chimeric harmonized CPTAC3 8f20a383-6ed9-4981-bac6-6463b6516b12 d3a19b006f15646bd32d0a6e126a4929 {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.RNA-Seq.genomic.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.genomic.gdc_realn.bam 8552882138 BAM genomic harmonized CPTAC3 01fb2668-aa9e-49e2-ae91-f8b93af2c23e 3dc2501d4e8497be9534feb523f89bdc {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.RNA-Seq.S16_L004_R1.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R1_001.fastq.gz 4426516378 FASTQ S16_L004_R1 unaligned CPTAC3 88212c9f-4a92-44be-acaa-3ff7e515ee07 78ad3daa211f11245e891c423156188e {"aliquot_tag": "ALQ_898eb3d6", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.RNA-Seq.S16_L004_R2.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R2_001.fastq.gz 4697624199 FASTQ S16_L004_R2 unaligned CPTAC3 a0bd7490-d7d8-4aa5-b785-90cb8408f484 24fe52482ff314f4574b6ddc268e6e95 {"aliquot_tag": "ALQ_898eb3d6", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.RNA-Seq.transcriptome.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.transcriptome.gdc_realn.bam 8635622276 BAM transcriptome harmonized CPTAC3 08410444-13a8-49dc-a325-8bfdd4caf61a be541e1f856b6f9b94ee8efc52a4985a {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.WGS.Tbm C3L-05313 AML WGS tumor_bone_marrow CPT0339580002 CPT0339580002.WholeGenome.RP-2158.bam 68561792756 BAM aligned CPTAC3 4faf5877-daea-4066-b364-46dbd29478c8 d3d7ef88749ad4f9a16be96f2061b2f5 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.WGS.Tbm.hg38 C3L-05313 AML WGS tumor_bone_marrow CPT0339580002 3c8e4bcf-3953-4404-8302-d3372072fe80_wgs_gdc_realn.bam 203810420083 BAM harmonized CPTAC3 7195342a-8050-4081-a400-40b6a592fa40 bb992cccaeea48c1b6c56df5cefe3ce0 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.WXS.Nbc C3L-05313 AML WXS buccal_normal CPT0339550004 CPT0339550004.WholeExome.RP-1303.bam 28056169993 BAM aligned CPTAC3 df53743f-987e-4635-8ca7-06f2645d1014 db1d4308d565868dc7f139df2106b174 {"aliquot_tag": "ALQ_a51dfbe2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05313.WXS.Nbc.hg38 C3L-05313 AML WXS buccal_normal CPT0339550004 fa3f28fc-ae10-4dae-af06-1d3e70583d71_wxs_gdc_realn.bam 38503948892 BAM harmonized CPTAC3 ae1d8fd4-9a96-4d17-a889-ded2269865bf a3ca843bf761a51e9169178aba36c076 {"aliquot_tag": "ALQ_a51dfbe2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05313.WXS.Tbm C3L-05313 AML WXS tumor_bone_marrow CPT0339580002 CPT0339580002.WholeExome.RP-1303.bam 20636515890 BAM aligned CPTAC3 52be19a7-dec7-4d31-84fe-642df5fe9e13 220618f88b85d67754b6de1b064f279e {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05313.WXS.Tbm.hg38 C3L-05313 AML WXS tumor_bone_marrow CPT0339580002 3c8e4bcf-3953-4404-8302-d3372072fe80_wxs_gdc_realn.bam 28091554825 BAM harmonized CPTAC3 9adefebd-3464-4c31-985f-06e98af14df1 b5cbe9a44eeb62a2d90cc99ded158be4 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05315.MethArray.Green.Tpb C3L-05315 AML Methylation_Array tumor_peripheral_blood CPT0340590002 205705520128_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 375cb4e6-c8ce-4942-ba76-7b9b5ed427d0 acd1f6621d8d3a92d34d7a14a77cba18 {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.MethArray.Red.Tpb C3L-05315 AML Methylation_Array tumor_peripheral_blood CPT0340590002 205705520128_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 556a0fa2-2bbf-4ead-8a50-aa512ff09985 ff5a5ddfe9dd66ef2a153f4a1325e6d3 {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.miRNA-Seq.S23_L001_R1.Tpb C3L-05315 AML miRNA-Seq tumor_peripheral_blood CPT0340600002 220125_UNC32-K00270_0311_AHMNYYBBXY_TTAGGC_S23_L001_R1_001.unaln.bam 296859760 BAM S23_L001_R1 unaligned CPTAC3 0b8d5af6-c18f-46df-9654-f9770f0b9762 aba7c575ae64026ecc648e8f2b374ec3 {"aliquot_tag": "ALQ_9d57efc3", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.miRNA-Seq.Tpb.hg38 C3L-05315 AML miRNA-Seq tumor_peripheral_blood CPT0340600002 4b5a3b0f-0ebb-49b7-abb7-dbb8588847c5_mirnaseq_gdc_realn.bam 319473706 BAM harmonized CPTAC3 4f5cd1ae-07ec-4732-b440-7aee2e2c63b9 3914eab86296a1328bb8a36249d88835 {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.RNA-Seq.chimeric.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.chimeric.gdc_realn.bam 754850786 BAM chimeric harmonized CPTAC3 82e0256e-d5d9-4e8a-9969-3ca470cc49b7 f3163b2a383d3f09148fd7c55fe77b3e {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.RNA-Seq.genomic.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.genomic.gdc_realn.bam 8034997757 BAM genomic harmonized CPTAC3 585f3edb-394d-4f10-a04a-f82d4b64a27a 024d972afdbc02e96d3e170310fb6d96 {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.RNA-Seq.S32_L008_R1.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R1_001.fastq.gz 3912388792 FASTQ S32_L008_R1 unaligned CPTAC3 20e0a682-ec84-4c52-85ca-70f82abf6c2a f5fddb98790cb8c3e8415f697ebdf63a {"aliquot_tag": "ALQ_9d57efc3", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.RNA-Seq.S32_L008_R2.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R2_001.fastq.gz 4291270091 FASTQ S32_L008_R2 unaligned CPTAC3 19b29761-1f21-4660-80e5-6d704f08a5be bda24fd7bb51da710a2eaa4ec85c3bce {"aliquot_tag": "ALQ_9d57efc3", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.RNA-Seq.transcriptome.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.transcriptome.gdc_realn.bam 7619133973 BAM transcriptome harmonized CPTAC3 f784f1be-5664-4cc8-a4c1-8f7a3c1a5795 7004d8e68ece1e533b8c0ca95c6e06d5 {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.WGS.Tpb C3L-05315 AML WGS tumor_peripheral_blood CPT0340590002 CPT0340590002.WholeGenome.RP-2158.bam 54765078682 BAM aligned CPTAC3 95c8c488-a602-4043-9590-6d33e89a7a75 5d22fba6523678c132c136a0330ec10c {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.WGS.Tpb.hg38 C3L-05315 AML WGS tumor_peripheral_blood CPT0340590002 32a00e9b-b7e7-4976-bf87-99ba02a48559_wgs_gdc_realn.bam 158756562946 BAM harmonized CPTAC3 586eec3c-85ac-444a-bac0-6663471a2ed1 348a46f92da76f44210dc05c8e0ee47e {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.WXS.Nbc C3L-05315 AML WXS buccal_normal CPT0340560004 CPT0340560004.WholeExome.RP-1303.bam 20309279475 BAM aligned CPTAC3 cf5c3c46-0a39-4c83-95bb-db37ade136e2 2a4ee0a9c9ae7bbcbb7b430f7cb88685 {"aliquot_tag": "ALQ_7de0cdf8", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05315.WXS.Nbc.hg38 C3L-05315 AML WXS buccal_normal CPT0340560004 e09622f7-f63a-4a40-ad7e-fef31bbcbb83_wxs_gdc_realn.bam 81819332650 BAM harmonized CPTAC3 a6f0dd60-9ac1-43b3-b30e-7b75c626e851 58f70b5d1c89176afff361cd230e2d0d {"aliquot_tag": "ALQ_7de0cdf8", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05315.WXS.Tpb C3L-05315 AML WXS tumor_peripheral_blood CPT0340590002 CPT0340590002.WholeExome.RP-1303.bam 24482817213 BAM aligned CPTAC3 ba523803-92b1-42b7-a923-dce29d55cfbe 15d69be732dc3b212e285d13aeefcfa0 {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05315.WXS.Tpb.hg38 C3L-05315 AML WXS tumor_peripheral_blood CPT0340590002 32a00e9b-b7e7-4976-bf87-99ba02a48559_wxs_gdc_realn.bam 33836991288 BAM harmonized CPTAC3 312fb399-0a32-4a1e-b744-317107e70d5e 4f9f550db858255dbbb33d3077c7cc1f {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05316.MethArray.Green.Tbm C3L-05316 AML Methylation_Array tumor_bone_marrow CPT0339720002 204930640111_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 ab388d39-cf07-44f9-a049-e3aab0950dbe 7aa07b139acac5e6a7025791bf28d61f {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.MethArray.Red.Tbm C3L-05316 AML Methylation_Array tumor_bone_marrow CPT0339720002 204930640111_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 a95b2bd4-a399-4221-9a96-5c73568e04b5 f398698eb222117c15c81d9a7d2c71d1 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.miRNA-Seq.S32_L007_R1.Tbm C3L-05316 AML miRNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGGCA_S32_L007_R1_001.unaln.bam 319441133 BAM S32_L007_R1 unaligned CPTAC3 e792ac23-2179-4493-bf02-860f29c3f9df 8d25b3d2cc84f5c063059137d1bf3a7c {"aliquot_tag": "ALQ_8ef60a7c", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.miRNA-Seq.Tbm.hg38 C3L-05316 AML miRNA-Seq tumor_bone_marrow CPT0339730002 33a3327f-497f-4099-84cc-5e62bf9f79a9_mirnaseq_gdc_realn.bam 343653286 BAM harmonized CPTAC3 fe008aa2-08c2-4097-a535-0493402373b2 597dab224d9cc0c7d5d90da2864f7cde {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.RNA-Seq.chimeric.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.chimeric.gdc_realn.bam 102916973 BAM chimeric harmonized CPTAC3 9cffd4b8-254c-4584-b3cc-8cf1aad9d13f f863acec2f90f42f20a2cd9dc32a3a3d {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.RNA-Seq.genomic.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.genomic.gdc_realn.bam 8282260950 BAM genomic harmonized CPTAC3 6409e8f4-392d-4b76-8619-83cc5ff8ad37 4de76a0ac1e7d21296f5314eab2d45ec {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.RNA-Seq.S14_L004_R1.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R1_001.fastq.gz 4194153238 FASTQ S14_L004_R1 unaligned CPTAC3 fd3abe1d-c01d-4172-8a82-79a924db13a6 a1a126db9664b12713254c78b5d63eff {"aliquot_tag": "ALQ_8ef60a7c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.RNA-Seq.S14_L004_R2.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R2_001.fastq.gz 4492439260 FASTQ S14_L004_R2 unaligned CPTAC3 306fd8bf-45ab-4a9a-abb2-e0bf1cd11927 b0cbb0f05f7b73b94d7ee9142ef91833 {"aliquot_tag": "ALQ_8ef60a7c", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.RNA-Seq.transcriptome.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.transcriptome.gdc_realn.bam 8936707767 BAM transcriptome harmonized CPTAC3 b1de04c8-8ff0-4625-9b16-c140ad38a048 10923b07500a6ee6d16b0e6818aafd9b {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.WGS.Tbm C3L-05316 AML WGS tumor_bone_marrow CPT0339720002 CPT0339720002.WholeGenome.RP-2158.bam 40220969326 BAM aligned CPTAC3 7ecb1ea9-cc31-45a7-ba85-5778952d3db6 eef3a35ef4416ec8460f1705529374c9 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.WGS.Tbm.hg38 C3L-05316 AML WGS tumor_bone_marrow CPT0339720002 f0b9d521-c9f4-4f90-9d64-6197ac84f000_wgs_gdc_realn.bam 121441730666 BAM harmonized CPTAC3 70d364ce-ac03-46ec-973b-fe5232a944e6 dc4fbadb83c0799bd494174059445963 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.WXS.Nbc C3L-05316 AML WXS buccal_normal CPT0339690004 CPT0339690004.WholeExome.RP-1303.bam 29875616363 BAM aligned CPTAC3 08f2d4a3-e94e-4fc6-9a21-483a0700ac57 a6144baaa8ccb24f33505244bbe67185 {"aliquot_tag": "ALQ_e679644d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05316.WXS.Nbc.hg38 C3L-05316 AML WXS buccal_normal CPT0339690004 fd86394a-4e44-4f82-a775-dc9e33f61b0a_wxs_gdc_realn.bam 40974285867 BAM harmonized CPTAC3 955c07ff-fa9a-4d95-b6f6-325d943e8ffb f2bf76adfc9ead78ea403242cdfe9b3c {"aliquot_tag": "ALQ_e679644d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05316.WXS.Tbm C3L-05316 AML WXS tumor_bone_marrow CPT0339720002 CPT0339720002.WholeExome.RP-1303.bam 25609332514 BAM aligned CPTAC3 799df73d-a072-436c-8473-94cece4ac4ce dd475d6254de0f6b23bddf8f1779590d {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05316.WXS.Tbm.hg38 C3L-05316 AML WXS tumor_bone_marrow CPT0339720002 f0b9d521-c9f4-4f90-9d64-6197ac84f000_wxs_gdc_realn.bam 35021016231 BAM harmonized CPTAC3 b48e68e0-d386-4275-a3f4-00e3724bdf80 1bff0c8e6be27122e79f53eed4bf0cf8 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05317.MethArray.Green.Tpb C3L-05317 AML Methylation_Array tumor_peripheral_blood CPT0340740002 205987780094_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 033a65d6-1238-4491-837f-9b57d17f9dd1 0f53d0ff24009d1534b1352a02605e7a {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.MethArray.Red.Tpb C3L-05317 AML Methylation_Array tumor_peripheral_blood CPT0340740002 205987780094_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 3e0dc305-b8a8-4ca8-bb66-8bdccfd0bbd8 161570b33c3449204104eab26657b1e5 {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.miRNA-Seq.S15_L001_R1.Tpb C3L-05317 AML miRNA-Seq tumor_peripheral_blood CPT0340750002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAATCG_S15_L001_R1_001.unaln.bam 242521533 BAM S15_L001_R1 unaligned CPTAC3 06c4f3af-90f4-47ff-8a6a-86eea367d579 f31255aaa8f5f6f80732986225f5522c {"aliquot_tag": "ALQ_9eebb316", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.miRNA-Seq.Tpb.hg38 C3L-05317 AML miRNA-Seq tumor_peripheral_blood CPT0340750002 2cf8ddc8-c81d-46f9-82bb-635e71d8ee1c_mirnaseq_gdc_realn.bam 266037448 BAM harmonized CPTAC3 8ec7acab-fc2f-420b-8bd0-eb65f0d430b5 75235f27fbcffd9a62afe2e8929cf2d5 {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.RNA-Seq.chimeric.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.chimeric.gdc_realn.bam 933603543 BAM chimeric harmonized CPTAC3 c8816a66-bfe1-4288-a097-935aa38db021 94800c42b44d4276cec154881cb36bbe {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.RNA-Seq.genomic.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.genomic.gdc_realn.bam 8473288495 BAM genomic harmonized CPTAC3 aa6ace1f-f6bc-4dbc-a18b-29aaef0ee46e be085fa8fe49fadf8fff506be31dbafc {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.RNA-Seq.S18_L005_R1.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R1_001.fastq.gz 3995264696 FASTQ S18_L005_R1 unaligned CPTAC3 96cae845-892d-45b4-82dd-abbb829ac7a0 ff984bc46734b006c6b04503197ad7df {"aliquot_tag": "ALQ_9eebb316", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.RNA-Seq.S18_L005_R2.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R2_001.fastq.gz 4337475499 FASTQ S18_L005_R2 unaligned CPTAC3 046e7c55-40fa-4464-8f56-7d45d33a0f08 f0d0e70bf20853284496ba175dd1c031 {"aliquot_tag": "ALQ_9eebb316", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.RNA-Seq.transcriptome.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.transcriptome.gdc_realn.bam 8102540872 BAM transcriptome harmonized CPTAC3 0f59a6e4-0545-4257-9910-7cf4752abab1 87f11cf8d02e1d69fc4fe904ce1dce98 {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.WGS.Nbc C3L-05317 AML WGS buccal_normal CPT0340710002 CPT0340710002.WholeGenome.RP-2158.bam 52305022243 BAM aligned CPTAC3 e71138fc-526c-4c9b-aa84-624078b2c219 3cb65ef5b49cddf5cce67bed399f401e {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05317.WGS.Nbc.hg38 C3L-05317 AML WGS buccal_normal CPT0340710002 564be77b-0307-454f-9977-800641a0f88f_wgs_gdc_realn.bam 161842268298 BAM harmonized CPTAC3 8169035d-610e-4406-a2bf-0252251f2300 ea08ead4e27679e3407eafc533134b50 {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05317.WGS.Tpb C3L-05317 AML WGS tumor_peripheral_blood CPT0340740002 CPT0340740002.WholeGenome.RP-2158.bam 44040100557 BAM aligned CPTAC3 49c0b028-777b-474d-95c1-419c4a83cfd9 3cf25d6f9eb7d61b2b7bc2e0bab5647f {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.WGS.Tpb.hg38 C3L-05317 AML WGS tumor_peripheral_blood CPT0340740002 d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wgs_gdc_realn.bam 135046354348 BAM harmonized CPTAC3 106a273c-f44a-47df-b769-0f5969ede688 737085d327a22bacd77586207f7d24cd {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.WXS.Nbc C3L-05317 AML WXS buccal_normal CPT0340710002 CPT0340710002.WholeExome.RP-1303.bam 30347765365 BAM aligned CPTAC3 a5fd0121-ceca-4db1-b983-e216ad1663a4 0041eb1283aa96aed7d611fe1f0d9bdb {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05317.WXS.Nbc.hg38 C3L-05317 AML WXS buccal_normal CPT0340710002 564be77b-0307-454f-9977-800641a0f88f_wxs_gdc_realn.bam 42041208181 BAM harmonized CPTAC3 a46cc866-2de4-46d9-b8dd-88e6b91c83f5 76940f07836a1341ea3aa7a8e15281dd {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05317.WXS.Tpb C3L-05317 AML WXS tumor_peripheral_blood CPT0340740002 CPT0340740002.WholeExome.RP-1303.bam 26617492851 BAM aligned CPTAC3 678c17e3-18fc-47da-9a98-01d6aca93136 8f333e389b8c371a0012e8080e14acba {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05317.WXS.Tpb.hg38 C3L-05317 AML WXS tumor_peripheral_blood CPT0340740002 d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wxs_gdc_realn.bam 36668438169 BAM harmonized CPTAC3 5513bf66-0b2c-4ef1-850b-6de5c1882efd a81d5ef237d47639d1eccc46562e0685 {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.MethArray.Green.Tpb C3L-05318 AML Methylation_Array tumor_peripheral_blood CPT0340190002 205705520128_R03C01_Grn.idat 13677886 IDAT Green NA CPTAC3 b9e98634-da59-4036-953f-269fd2012dc1 c912e087fa9d25d3051d58a4e9f668fe {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.MethArray.Red.Tpb C3L-05318 AML Methylation_Array tumor_peripheral_blood CPT0340190002 205705520128_R03C01_Red.idat 13677886 IDAT Red NA CPTAC3 c71c9941-315e-426f-839b-9fed27512513 fe77c703615d3c1f5e928c2cc5556a3e {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.miRNA-Seq.S21_L001_R1.Tpb C3L-05318 AML miRNA-Seq tumor_peripheral_blood CPT0340200002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGGCA_S21_L001_R1_001.unaln.bam 194387641 BAM S21_L001_R1 unaligned CPTAC3 c3b50536-46ed-4427-b694-5714dcb2cbd8 68bc1fe8d0f49508817c9c9fb1cfbae3 {"aliquot_tag": "ALQ_6c6add5", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.miRNA-Seq.Tpb.hg38 C3L-05318 AML miRNA-Seq tumor_peripheral_blood CPT0340200002 f730f965-8fa3-4373-88df-382c6d882c1b_mirnaseq_gdc_realn.bam 213713983 BAM harmonized CPTAC3 c24d3fda-f4dc-422c-a834-1cdf8f331941 37d0661c44b34c8551c0d359f85fc93f {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.RNA-Seq.chimeric.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.chimeric.gdc_realn.bam 841533337 BAM chimeric harmonized CPTAC3 012552a6-d91f-407b-8e37-0ef5b316f66d 441bba81075bc366861baef363292e3d {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.RNA-Seq.genomic.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.genomic.gdc_realn.bam 9265027028 BAM genomic harmonized CPTAC3 978a0c15-abb0-405b-b2bd-efc929ecccf6 65a5816d716ec90360e6fb2a42e8584d {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.RNA-Seq.S26_L007_R1.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R1_001.fastq.gz 4328353401 FASTQ S26_L007_R1 unaligned CPTAC3 85c6c9ac-1d34-446a-9da4-27b08104b1d3 292e2b306f69685e52dee93a33a6f5ac {"aliquot_tag": "ALQ_6c6add5", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.RNA-Seq.S26_L007_R2.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R2_001.fastq.gz 4763712926 FASTQ S26_L007_R2 unaligned CPTAC3 f0c73973-b3fc-4da0-9255-9d0f251fa09a e25d246b80fffdd39e9806769731210d {"aliquot_tag": "ALQ_6c6add5", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.RNA-Seq.transcriptome.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.transcriptome.gdc_realn.bam 7605434977 BAM transcriptome harmonized CPTAC3 fcfb2ace-343a-4e7c-86f5-4694107ef409 f9487dd41f5b3b2f32e9a708296473e4 {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.WGS.Tpb C3L-05318 AML WGS tumor_peripheral_blood CPT0340190002 CPT0340190002.WholeGenome.RP-2158.bam 58942718796 BAM aligned CPTAC3 bf6aca8c-fef7-4cf5-a722-107b20aae057 b5ff189fdccb5797c369f446a63295a9 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.WGS.Tpb.hg38 C3L-05318 AML WGS tumor_peripheral_blood CPT0340190002 b130869f-200a-4b0b-bb14-c216e8a8d8d3_wgs_gdc_realn.bam 513896838412 BAM harmonized CPTAC3 0b41440a-1550-4ee1-b2ec-878717972e62 9a93f0c2a78a74c399f67c92029c9734 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.WXS.Nbc C3L-05318 AML WXS buccal_normal CPT0343360004 CPT0343360004.WholeExome.RP-1303.bam 27845411016 BAM aligned CPTAC3 d838b0db-3190-4ef2-9b81-3aa92668165b 1316e2933d785b3c9a6da8eb14f0469f {"aliquot_tag": "ALQ_9a513478", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05318.WXS.Nbc.hg38 C3L-05318 AML WXS buccal_normal CPT0343360004 555827ed-b7e8-44b0-9a30-f7cb9267d605_wxs_gdc_realn.bam 37563262859 BAM harmonized CPTAC3 d6e2c490-ffcc-464c-ad86-a7d4f73cb390 831156a879cef20541fd3bda429bb3ee {"aliquot_tag": "ALQ_9a513478", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05318.WXS.Tpb C3L-05318 AML WXS tumor_peripheral_blood CPT0340190002 CPT0340190002.WholeExome.RP-1303.bam 23566723323 BAM aligned CPTAC3 01ab7b59-5883-4b12-a7c7-bcdf32b9e026 f667b06c0befedced8f21890c8d35771 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05318.WXS.Tpb.hg38 C3L-05318 AML WXS tumor_peripheral_blood CPT0340190002 b130869f-200a-4b0b-bb14-c216e8a8d8d3_wxs_gdc_realn.bam 33010345230 BAM harmonized CPTAC3 055faaab-28cb-4c6d-9fce-3fad493b76cb 798a1ee4dfef42864e2fb77ff466c201 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.MethArray.Green.Tpb C3L-05320 AML Methylation_Array tumor_peripheral_blood CPT0339870002 205987780101_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 81adf049-68f4-464b-bc6a-4b4928b439a0 e60378f46e297bfbbe46a098146fda5e {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.MethArray.Red.Tpb C3L-05320 AML Methylation_Array tumor_peripheral_blood CPT0339870002 205987780101_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 1f2367b0-3980-4644-9c73-4788cb6ccddd 1591556668df5ee493504e33fefaf2b3 {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.miRNA-Seq.S20_L001_R1.Tpb C3L-05320 AML miRNA-Seq tumor_peripheral_blood CPT0339880002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGAAG_S20_L001_R1_001.unaln.bam 210101213 BAM S20_L001_R1 unaligned CPTAC3 f6fa8507-e7fa-4244-8017-3a4e00dcb87e 29add84e18e2ce90e204be22e2505601 {"aliquot_tag": "ALQ_87089b8", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.miRNA-Seq.Tpb.hg38 C3L-05320 AML miRNA-Seq tumor_peripheral_blood CPT0339880002 f882a493-cb3d-43eb-a1d1-97f678b8f2e9_mirnaseq_gdc_realn.bam 235005872 BAM harmonized CPTAC3 72fab87e-05dc-402b-b2b4-9450b1b142d8 06c177a20fef2f6ad74d9f7e715560b4 {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.RNA-Seq.chimeric.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.chimeric.gdc_realn.bam 445419065 BAM chimeric harmonized CPTAC3 ae774898-a06c-47ec-8999-7d38f3901e23 4018eaab1877cfd9bd71280900fd0cb0 {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.RNA-Seq.genomic.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.genomic.gdc_realn.bam 7822584363 BAM genomic harmonized CPTAC3 b72c76de-9539-4bf9-85b6-5bc3940cf11c ca60c4c78f41b01943c43129290f47f1 {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.RNA-Seq.S28_L007_R1.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R1_001.fastq.gz 3894682572 FASTQ S28_L007_R1 unaligned CPTAC3 58fe5b7e-1e2b-4b7b-8160-ff95ac1e8243 ff9b0461ffe243bc012031a76db6b50a {"aliquot_tag": "ALQ_87089b8", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.RNA-Seq.S28_L007_R2.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R2_001.fastq.gz 4193776141 FASTQ S28_L007_R2 unaligned CPTAC3 7b34f245-fca8-4c20-af9e-b8b66f6dfac3 7c98f269a69536b9758191d9dd3a82e6 {"aliquot_tag": "ALQ_87089b8", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.RNA-Seq.transcriptome.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.transcriptome.gdc_realn.bam 10534420855 BAM transcriptome harmonized CPTAC3 b7532d85-a94b-408f-b4b4-6b62488e9a8a f1b18066f834b890843f3c51117aa82c {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.WGS.Tpb C3L-05320 AML WGS tumor_peripheral_blood CPT0339870002 CPT0339870002.WholeGenome.RP-2158.bam 51258922514 BAM aligned CPTAC3 b938b0f8-0703-4df4-add4-b4be2240c7e5 5748b06c441326f6904e83762fe03eb5 {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.WGS.Tpb.hg38 C3L-05320 AML WGS tumor_peripheral_blood CPT0339870002 d63123be-df53-4296-b83a-11f2fa243e86_wgs_gdc_realn.bam 452759477752 BAM harmonized CPTAC3 7803bc8c-d6d0-4975-9c62-2fea8187f349 9c81b12c5af98eb238beceb8acdea04c {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.WXS.Nbc C3L-05320 AML WXS buccal_normal CPT0339840004 CPT0339840004.WholeExome.RP-1303.bam 21914195628 BAM aligned CPTAC3 15fc319f-90b1-4c96-b3c1-6e44846396c1 97bf3bee017516f88f37d5c68aaa2f5f {"aliquot_tag": "ALQ_24e3c18c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05320.WXS.Nbc.hg38 C3L-05320 AML WXS buccal_normal CPT0339840004 68cf330a-fa16-4132-bf9b-1cc003a13282_wxs_gdc_realn.bam 29293490828 BAM harmonized CPTAC3 55f9d769-c711-4f7b-a3b6-33b16ff5734c 9605c0f93cf2d1607a7e333220df1ae0 {"aliquot_tag": "ALQ_24e3c18c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05320.WXS.Tpb C3L-05320 AML WXS tumor_peripheral_blood CPT0339870002 CPT0339870002.WholeExome.RP-1303.bam 20813544788 BAM aligned CPTAC3 6387725b-3839-433f-bea9-1adcd9bed73d 51a7661e2cd7d07d6a12ee55a5cded88 {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05320.WXS.Tpb.hg38 C3L-05320 AML WXS tumor_peripheral_blood CPT0339870002 d63123be-df53-4296-b83a-11f2fa243e86_wxs_gdc_realn.bam 73123744822 BAM harmonized CPTAC3 af1fde5a-49a0-4607-ab3d-dce11cada86a c0c9be17a5b57e4ac018fa392957931a {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05325.MethArray.Green.Tbm C3L-05325 AML Methylation_Array tumor_bone_marrow CPT0302970002 204930640111_R08C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5cf9af22-03e3-4fb8-8f7e-f83971e90695 299454418fb5d64ae4ef4b7f5d8293d5 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.MethArray.Red.Tbm C3L-05325 AML Methylation_Array tumor_bone_marrow CPT0302970002 204930640111_R08C01_Red.idat 13677960 IDAT Red NA CPTAC3 bd7b2228-69e1-491e-b59d-1acf0b4248ac 0ee62af8ec2a15c812b129935c42e225 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.miRNA-Seq.S41_L008_R1.Tbm C3L-05325 AML miRNA-Seq tumor_bone_marrow CPT0302980002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACGAT_S41_L008_R1_001.unaln.bam 377230039 BAM S41_L008_R1 unaligned CPTAC3 be7638b7-7ed9-43d6-8939-a1652c4f9e51 1676e6698e3e8b2ea6f1170fc3afb701 {"aliquot_tag": "ALQ_4fa40904", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.miRNA-Seq.Tbm.hg38 C3L-05325 AML miRNA-Seq tumor_bone_marrow CPT0302980002 7b07132a-0048-4c84-9c14-23c2dbdc0143_mirnaseq_gdc_realn.bam 396617023 BAM harmonized CPTAC3 e49d89ef-1b71-4caa-b6d2-5819e356adf8 f70a7fa10c2575a65b356c1679eeb4d9 {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.RNA-Seq.chimeric.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.chimeric.gdc_realn.bam 145422441 BAM chimeric harmonized CPTAC3 3491ba24-b6f1-4310-ac5b-c9a790328d0c 4da728dbbd003f8e04a090840540cd52 {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.RNA-Seq.genomic.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.genomic.gdc_realn.bam 8082040900 BAM genomic harmonized CPTAC3 ea63d3fe-65d0-4dca-8e23-9c7c01fbc105 13700607219dceccc5ef0b5c28c9589a {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.RNA-Seq.S1_L001_R1.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3865706854 FASTQ S1_L001_R1 unaligned CPTAC3 9e0e8b18-e220-45e2-baea-b937188f3285 b4a7550fd5c69b6f73ad4b30dbaaf3e6 {"aliquot_tag": "ALQ_4fa40904", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.RNA-Seq.S1_L001_R2.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4408396996 FASTQ S1_L001_R2 unaligned CPTAC3 6c64aa9e-f5cc-4d55-bdad-8ba6f69a4075 680565e55297e4f206372163c52f9f50 {"aliquot_tag": "ALQ_4fa40904", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.RNA-Seq.transcriptome.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.transcriptome.gdc_realn.bam 10397615890 BAM transcriptome harmonized CPTAC3 721c187a-5d07-43a4-b081-187b7068b2cb 93dd17f524d57517bfe2b2ef6f605df4 {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.WGS.Nbc C3L-05325 AML WGS buccal_normal CPT0303090001 CPT0303090001.WholeGenome.RP-2158.bam 56590884436 BAM aligned CPTAC3 4e767e17-6e45-40f8-8f28-e7529b80f106 a3cd9d2478f141a954824a0cc57997e3 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05325.WGS.Nbc.hg38 C3L-05325 AML WGS buccal_normal CPT0303090001 e19d601a-2cc0-4fa6-9087-b132aad1231c_wgs_gdc_realn.bam 165632305636 BAM harmonized CPTAC3 bd569d7a-2452-48fc-bb63-a7592fecb358 5e0c95a681d8c71b90df5b283ff951c2 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05325.WGS.Tbm C3L-05325 AML WGS tumor_bone_marrow CPT0302970002 CPT0302970002.WholeGenome.RP-2158.bam 54453345467 BAM aligned CPTAC3 b57e5e5a-06fb-4cdc-8c6b-6a89307b13f2 048a27b7bbb91003bf649f83b262e108 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.WGS.Tbm.hg38 C3L-05325 AML WGS tumor_bone_marrow CPT0302970002 4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wgs_gdc_realn.bam 161685499178 BAM harmonized CPTAC3 cc26201b-60ab-42fe-b54b-01affbeb695b a15d2dab24df9c784c4335d04accf98e {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.WXS.Nbc C3L-05325 AML WXS buccal_normal CPT0303090001 CPT0303090001.WholeExome.RP-1303.bam 26560098500 BAM aligned CPTAC3 72060486-aa88-46f1-8892-64a0335a49f4 f94cffdc7c758f62474068d9cc11fbd8 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05325.WXS.Nbc.hg38 C3L-05325 AML WXS buccal_normal CPT0303090001 e19d601a-2cc0-4fa6-9087-b132aad1231c_wxs_gdc_realn.bam 36111724180 BAM harmonized CPTAC3 508a3aa9-018b-4db7-9750-68ad57767d7b 272c22ad952fe4e8dc0549fc4467d716 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05325.WXS.Tbm C3L-05325 AML WXS tumor_bone_marrow CPT0302970002 CPT0302970002.WholeExome.RP-1303.bam 20849146090 BAM aligned CPTAC3 0ece81db-6720-4b44-ac8f-e0dd68e02452 c93d10ce4805a61662d7f5d99acc5ae2 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05325.WXS.Tbm.hg38 C3L-05325 AML WXS tumor_bone_marrow CPT0302970002 4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wxs_gdc_realn.bam 29330023655 BAM harmonized CPTAC3 bbc8b9df-2e77-4e96-bedb-039e831f7cd6 8f0bfb3101280932bc854c4676c71839 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.MethArray.Green.Tbm C3L-05326 AML Methylation_Array tumor_bone_marrow CPT0302760002 205555390174_R02C01_Grn.idat 13677965 IDAT Green NA CPTAC3 d3d39004-8ccf-47f1-a2eb-fb977097d8d5 4b97732149f247d943343eae7a6d374e {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.MethArray.Red.Tbm C3L-05326 AML Methylation_Array tumor_bone_marrow CPT0302760002 205555390174_R02C01_Red.idat 13677965 IDAT Red NA CPTAC3 fd96d0a7-6894-477a-8fdd-636ff8c40c1e 5b3edbedf8f76ae8c0e29abdc18b67c6 {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.miRNA-Seq.S39_L008_R1.Tbm C3L-05326 AML miRNA-Seq tumor_bone_marrow CPT0302770002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAACTA_S39_L008_R1_001.unaln.bam 358837826 BAM S39_L008_R1 unaligned CPTAC3 dac6b25e-7855-4833-867d-a88e51a33262 644d4201cd35494ef4a846265b22005d {"aliquot_tag": "ALQ_f7feffa5", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.miRNA-Seq.Tbm.hg38 C3L-05326 AML miRNA-Seq tumor_bone_marrow CPT0302770002 f2f9ec28-5d44-451e-ab6b-7cf3f85dd00b_mirnaseq_gdc_realn.bam 391075330 BAM harmonized CPTAC3 1f6c3cbd-2b30-4aad-ae05-e386b9f1d438 7ac78cb490800372dcd3a35c5ed27cc1 {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.RNA-Seq.chimeric.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.chimeric.gdc_realn.bam 134384296 BAM chimeric harmonized CPTAC3 5b6926b5-670c-4442-8492-7db6bc49e899 42b6acd643de8d2ae04df0d6971c790b {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.RNA-Seq.genomic.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.genomic.gdc_realn.bam 7897135026 BAM genomic harmonized CPTAC3 dfa72d70-310c-465d-aa9c-fa1e0aa05f9d 34d42ed146a43d618a668bb60ddb3bd0 {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.RNA-Seq.S4_L001_R1.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R1_001.fastq.gz 3880007997 FASTQ S4_L001_R1 unaligned CPTAC3 f93b8cdc-388d-43ac-82ea-65102255812d 0f7a6cd08b639e7d54a6a049b3f975aa {"aliquot_tag": "ALQ_f7feffa5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.RNA-Seq.S4_L001_R2.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R2_001.fastq.gz 4354319919 FASTQ S4_L001_R2 unaligned CPTAC3 2efc1bcc-69be-4919-a672-f15e499562a7 05a33e04d2d99d56839c12c406921d15 {"aliquot_tag": "ALQ_f7feffa5", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.RNA-Seq.transcriptome.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.transcriptome.gdc_realn.bam 7817736125 BAM transcriptome harmonized CPTAC3 ec99fa68-b94a-405c-889f-96bb439e4924 aa47717ba3186623bb203e41c5dddcbd {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.WGS.Nbc C3L-05326 AML WGS buccal_normal CPT0302810001 CPT0302810001.WholeGenome.RP-2158.bam 50975153110 BAM aligned CPTAC3 b086b1da-a1b6-4fa8-8bc6-d3108e317114 a6fed2fd4ed877f385d2744ec91acb8c {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05326.WGS.Nbc.hg38 C3L-05326 AML WGS buccal_normal CPT0302810001 85125c43-2c59-4e3d-8314-cd25e40067d7_wgs_gdc_realn.bam 151390699487 BAM harmonized CPTAC3 5642b833-19b5-4ca9-86f9-5f2dccbe5689 ea517c1d52277084403518ab99b0b4cd {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05326.WGS.Tbm C3L-05326 AML WGS tumor_bone_marrow CPT0302760002 CPT0302760002.WholeGenome.RP-2158.bam 46492926205 BAM aligned CPTAC3 4d9c5f28-2169-458a-9d7d-250aea59ffe0 0b3497f8e0595600bd4324c5b7e096a8 {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.WGS.Tbm.hg38 C3L-05326 AML WGS tumor_bone_marrow CPT0302760002 b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wgs_gdc_realn.bam 131680411952 BAM harmonized CPTAC3 5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45 28beb11db9f9822675f50f7a195fc6dc {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.WXS.Nbc C3L-05326 AML WXS buccal_normal CPT0302810001 CPT0302810001.WholeExome.RP-1303.bam 33427677400 BAM aligned CPTAC3 a1744add-3d2c-461d-87ee-fd363bbc6948 dbbbf0ac5864fe65b06a26f21f625a94 {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05326.WXS.Nbc.hg38 C3L-05326 AML WXS buccal_normal CPT0302810001 85125c43-2c59-4e3d-8314-cd25e40067d7_wxs_gdc_realn.bam 45992366612 BAM harmonized CPTAC3 ec091100-2100-4d29-a873-296e36d7db86 e0e3c2edb2e2f8640fbde63aa56f24c8 {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05326.WXS.Tbm C3L-05326 AML WXS tumor_bone_marrow CPT0302760002 CPT0302760002.WholeExome.RP-1303.bam 28466118662 BAM aligned CPTAC3 c3f2f7b1-6385-4c4c-818b-cad5385a2ea4 16299cf5101fa7d7232d9066fde2bd6f {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05326.WXS.Tbm.hg38 C3L-05326 AML WXS tumor_bone_marrow CPT0302760002 b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wxs_gdc_realn.bam 39306222403 BAM harmonized CPTAC3 724a4f7d-86d8-4998-99c7-f5720004fd6a 172e3a1f8871d38a4dee8cfd376f9927 {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.MethArray.Green.Tbm C3L-05329 AML Methylation_Array tumor_bone_marrow CPT0302620002 205555390119_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 db0e6715-9a7f-40f9-beca-e2721c40bc98 469636ee3250c943a9cc25c61896b519 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.MethArray.Red.Tbm C3L-05329 AML Methylation_Array tumor_bone_marrow CPT0302620002 205555390119_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 e5f82d22-d8d4-409b-8e17-c55ccb7abfdf 78725551c0c68e6031dc3ba86886b2a8 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.miRNA-Seq.S4_L001_R1.Tbm C3L-05329 AML miRNA-Seq tumor_bone_marrow CPT0302630002 210702_UNC32-K00270_0289_AHKJ22BBXY_AGTTCC_S4_L001_R1_001.unaln.bam 335009017 BAM S4_L001_R1 unaligned CPTAC3 d4759a77-11fc-4d0f-bd4c-f51c095bb644 0cbcea1277da051d52d009dc3de16840 {"aliquot_tag": "ALQ_c9228ac0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.miRNA-Seq.Tbm.hg38 C3L-05329 AML miRNA-Seq tumor_bone_marrow CPT0302630002 a8ca982f-f202-4c3d-8870-c49b3226ba6a_mirnaseq_gdc_realn.bam 356328755 BAM harmonized CPTAC3 22491986-b918-4374-a438-934032dbe331 1a4275d850bc25b23aa485bc6e4ea6e0 {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.RNA-Seq.chimeric.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.chimeric.gdc_realn.bam 180387844 BAM chimeric harmonized CPTAC3 20756437-abef-4f99-8973-1184c914c96b fce9ffce0dc7cf72a623be8695bff5b8 {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.RNA-Seq.genomic.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.genomic.gdc_realn.bam 8182749938 BAM genomic harmonized CPTAC3 1117f318-f3cc-4378-8c69-6346a644dfb5 cad5734ae19b1ec1d243ea7553ebe0bc {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.RNA-Seq.S19_L005_R1.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R1_001.fastq.gz 4216058908 FASTQ S19_L005_R1 unaligned CPTAC3 db8f255b-3efc-4c13-a464-c72591e7a005 a6ffc728498141c3301a48fae9491d3c {"aliquot_tag": "ALQ_c9228ac0", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.RNA-Seq.S19_L005_R2.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R2_001.fastq.gz 4399016864 FASTQ S19_L005_R2 unaligned CPTAC3 5a5f7599-98e0-4f51-a77b-169bcfc351c8 10d7fd68ae44242b896febba46f6e0e2 {"aliquot_tag": "ALQ_c9228ac0", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.RNA-Seq.transcriptome.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.transcriptome.gdc_realn.bam 9941934063 BAM transcriptome harmonized CPTAC3 502329b9-a046-4b81-824d-e68a73cdf67d 05d91d9419722d336fa27519e5cbd04a {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.WGS.Nbc C3L-05329 AML WGS buccal_normal CPT0302720002 CPT0302720002.WholeGenome.RP-2158.bam 51307611082 BAM aligned CPTAC3 619a2f7a-1015-4349-ad5a-ea2a8af952fb 0a54442772942d9e71830830ef0b7ba4 {"aliquot_tag": "ALQ_3f1e70d5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05329.WGS.Nbc.hg38 C3L-05329 AML WGS buccal_normal CPT0302720002 b456bbdf-1c90-4adb-9e43-3e230e94ddfa_wgs_gdc_realn.bam 152193846711 BAM harmonized CPTAC3 791e3842-80c8-401d-a611-a5b5825f9ce7 0d32aa67b7d0dc80eb0866adffb45225 {"aliquot_tag": "ALQ_3f1e70d5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05329.WGS.Tbm C3L-05329 AML WGS tumor_bone_marrow CPT0302620002 CPT0302620002.WholeGenome.RP-2158.bam 74022828528 BAM aligned CPTAC3 dd445304-44c8-4444-8e7a-3d23b836cf7c ffcb89b5090b3793571609c0af9d6362 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.WGS.Tbm.hg38 C3L-05329 AML WGS tumor_bone_marrow CPT0302620002 23cb3fbd-58e0-498e-8b63-d02df69ca4f2_wgs_gdc_realn.bam 217750987783 BAM harmonized CPTAC3 2c76956b-1fb0-4fcf-af09-37466c893f73 c7357998a5b010e66bfe4f20417d56d8 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.WXS.Tbm C3L-05329 AML WXS tumor_bone_marrow CPT0302620002 CPT0302620002.WholeExome.RP-1303.bam 22179430814 BAM aligned CPTAC3 bade3fad-dca9-4dc2-87c0-8179fe0c7e15 0021fbba0f0e2c55d5d7593d49189a96 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05329.WXS.Tbm.hg38 C3L-05329 AML WXS tumor_bone_marrow CPT0302620002 23cb3fbd-58e0-498e-8b63-d02df69ca4f2_wxs_gdc_realn.bam 30741990622 BAM harmonized CPTAC3 6b9a11bc-b5d5-46bd-826e-fb1e47378114 696cede279c96a0f48ee9307270391c6 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.MethArray.Green.Tbm C3L-05331 AML Methylation_Array tumor_bone_marrow CPT0303460002 204930640111_R07C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5146cc9c-4ff6-467e-9214-aac9730eaa0e 18d947c345b4ea3cad60425a6c911e8b {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.MethArray.Red.Tbm C3L-05331 AML Methylation_Array tumor_bone_marrow CPT0303460002 204930640111_R07C01_Red.idat 13677960 IDAT Red NA CPTAC3 10e4276c-770a-4f87-b56c-4c3ad70842b0 697f066628de94a242d4d3f262fcfc8b {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.miRNA-Seq.S44_L008_R1.Tbm C3L-05331 AML miRNA-Seq tumor_bone_marrow CPT0303470002 210331_UNC31-K00269_0297_AHKCFKBBXY_CATGGC_S44_L008_R1_001.unaln.bam 176377459 BAM S44_L008_R1 unaligned CPTAC3 123c07a7-8e86-43c7-8a6b-68f78c1f7a15 7e3307375f7c13c2de43ffc54380b8e2 {"aliquot_tag": "ALQ_d71d86bf", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.miRNA-Seq.Tbm.hg38 C3L-05331 AML miRNA-Seq tumor_bone_marrow CPT0303470002 22b670d6-77df-4f60-b429-680a99bf4590_mirnaseq_gdc_realn.bam 190025838 BAM harmonized CPTAC3 9e8d744c-0fd6-43d5-96b7-2c4088e47e6b c715b91834e5647ba2ccaa2c0cceb913 {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.RNA-Seq.chimeric.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.chimeric.gdc_realn.bam 55266239 BAM chimeric harmonized CPTAC3 aa28150b-2d25-4c69-828e-907cfabba5f0 37e8fe4df93c8fd1c47f2b5266c94b81 {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.RNA-Seq.genomic.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.genomic.gdc_realn.bam 7357034413 BAM genomic harmonized CPTAC3 0b337f5d-e93d-4827-ab3c-deca03f2b5f5 a01790b56aa88f150956037e45cf017e {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.RNA-Seq.S31_L008_R1.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R1_001.fastq.gz 3742653458 FASTQ S31_L008_R1 unaligned CPTAC3 b151c6c4-6506-49eb-8799-962f84a085d2 5784df326ca2bd7819b998d69ec18561 {"aliquot_tag": "ALQ_d71d86bf", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.RNA-Seq.S31_L008_R2.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R2_001.fastq.gz 3998407281 FASTQ S31_L008_R2 unaligned CPTAC3 f1081644-0d91-4026-91cd-bacd5ff76d52 0c1f85d0a410860406580ff6da184dfb {"aliquot_tag": "ALQ_d71d86bf", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.RNA-Seq.transcriptome.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.transcriptome.gdc_realn.bam 9245018214 BAM transcriptome harmonized CPTAC3 8c5903c2-9c19-4e28-8d25-8b7d037d9c06 bd0f97b1e181484fe8fdbae0c1a25477 {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.WGS.Nbc C3L-05331 AML WGS buccal_normal CPT0303580001 CPT0303580001.WholeGenome.RP-2158.bam 60840274168 BAM aligned CPTAC3 5aaf07f3-3cc2-496a-992d-1d0755da720c aa21eaa7f299f378f06a4a22f33935f8 {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05331.WGS.Nbc.hg38 C3L-05331 AML WGS buccal_normal CPT0303580001 bf80d543-ed68-4d80-b5a1-06a3b41c17db_wgs_gdc_realn.bam 183444998690 BAM harmonized CPTAC3 bbf8979f-080d-4a93-8c81-3b5b44a6a5db ccb739bfa83d9286323cad0d8bfd79f7 {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05331.WGS.Tbm C3L-05331 AML WGS tumor_bone_marrow CPT0303460002 CPT0303460002.WholeGenome.RP-2158.bam 46959933148 BAM aligned CPTAC3 6b03ed9a-dc88-4393-bd02-9f87b534d5c4 4743a587b6a7aa05eb7050158932825d {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.WGS.Tbm.hg38 C3L-05331 AML WGS tumor_bone_marrow CPT0303460002 2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wgs_gdc_realn.bam 131612383213 BAM harmonized CPTAC3 f1fae58f-9b1b-4025-a253-9dcb308f4beb 336a02c6fecfa783ad65883fecf08e4a {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.WXS.Nbc C3L-05331 AML WXS buccal_normal CPT0303580001 CPT0303580001.WholeExome.RP-1303.bam 29817732682 BAM aligned CPTAC3 fe873268-99eb-4920-96b0-c2b8875928ad ba555135d49c0f54e0145dc2e7466f1a {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05331.WXS.Nbc.hg38 C3L-05331 AML WXS buccal_normal CPT0303580001 bf80d543-ed68-4d80-b5a1-06a3b41c17db_wxs_gdc_realn.bam 40929110588 BAM harmonized CPTAC3 9bfc5703-1f12-4a0e-9ae7-17b7cf0ed5f9 516d8ffbb1c3890ec4f5f29e752f92f5 {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05331.WXS.Tbm C3L-05331 AML WXS tumor_bone_marrow CPT0303460002 CPT0303460002.WholeExome.RP-1303.bam 23804648889 BAM aligned CPTAC3 2ab9c7e6-1a1a-4825-9afe-5818779ccbaf 9cb43ebc03684ebca1fbfb37ad854e5a {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05331.WXS.Tbm.hg38 C3L-05331 AML WXS tumor_bone_marrow CPT0303460002 2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wxs_gdc_realn.bam 32693574088 BAM harmonized CPTAC3 786fd7da-f580-43f2-bb37-652f552c3bcd 5205f5ea78784ba85598d01ba19ba777 {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.MethArray.Green.Tbm C3L-05334 AML Methylation_Array tumor_bone_marrow CPT0303320002 205555380130_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 43aec0ef-38d4-4838-9007-892430357bcd d9716e56e25f47bce5a4cb1dbce317f7 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.MethArray.Red.Tbm C3L-05334 AML Methylation_Array tumor_bone_marrow CPT0303320002 205555380130_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 943f790d-8690-4cd4-9648-ab3342f29306 d0e5f05322cbc8624e525f73e3ff7787 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.miRNA-Seq.S43_L008_R1.Tbm C3L-05334 AML miRNA-Seq tumor_bone_marrow CPT0303330002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAGGCG_S43_L008_R1_001.unaln.bam 238972897 BAM S43_L008_R1 unaligned CPTAC3 7e11e7ed-296b-4de7-a56a-5196ea3c96ce 0efd0162a19abdf8d090bd883a5b397d {"aliquot_tag": "ALQ_3f9810c7", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.miRNA-Seq.Tbm.hg38 C3L-05334 AML miRNA-Seq tumor_bone_marrow CPT0303330002 dd86d68b-0355-4799-9f80-db4ed0d59941_mirnaseq_gdc_realn.bam 264185351 BAM harmonized CPTAC3 6a8182c7-88c0-4c4b-a5ab-c3db45b6c398 f38c89005d987919c3f82f0e8c745129 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.RNA-Seq.chimeric.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.chimeric.gdc_realn.bam 71589182 BAM chimeric harmonized CPTAC3 44422a11-80ef-4c94-b5a5-cea91e4d449e fd23a39aa1c1faa899b585a2579e9936 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.RNA-Seq.genomic.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.genomic.gdc_realn.bam 7734283952 BAM genomic harmonized CPTAC3 46ced65f-cea5-45ca-a032-8a6d3f632e55 02f5352b4ff3c78781387512c6f5ea68 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.RNA-Seq.S29_L008_R1.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R1_001.fastq.gz 4020869371 FASTQ S29_L008_R1 unaligned CPTAC3 e77c2a2d-dd02-46e6-a5d6-318bdb264914 a1d939e3935e75383fa7b31c4f0f37a9 {"aliquot_tag": "ALQ_3f9810c7", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.RNA-Seq.S29_L008_R2.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R2_001.fastq.gz 4279525035 FASTQ S29_L008_R2 unaligned CPTAC3 06f9c2be-9c21-41f3-9144-768393c3a873 655c337c805de5a885223e13e786160e {"aliquot_tag": "ALQ_3f9810c7", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.RNA-Seq.transcriptome.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.transcriptome.gdc_realn.bam 9728189517 BAM transcriptome harmonized CPTAC3 405c65f2-bf2b-4e7f-bbb6-04d49a67af57 48102d0810e4b5fdf0b1f9875578cf20 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.WGS.Tbm C3L-05334 AML WGS tumor_bone_marrow CPT0303320002 CPT0303320002.WholeGenome.RP-2158.bam 58846336015 BAM aligned CPTAC3 328856bb-1531-4d62-a957-157e82b2f6eb da0e2394c6a29a2e7445c01d679a3de5 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.WGS.Tbm.hg38 C3L-05334 AML WGS tumor_bone_marrow CPT0303320002 268ad7f9-d206-4f81-bbb8-d5b3037e47ab_wgs_gdc_realn.bam 172800935254 BAM harmonized CPTAC3 eb11fee7-9838-43b4-92d1-2ff6a994bc31 d66db84022819da49506879cf7b55fed {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.WXS.Nbc C3L-05334 AML WXS buccal_normal CPT0303440002 CPT0303440002.WholeExome.RP-1303.bam 28980765151 BAM aligned CPTAC3 eae67e58-30a4-44d3-abfb-c4c674dd2814 4b85978475413d5e50de0628194c71e6 {"aliquot_tag": "ALQ_90bdfc6f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05334.WXS.Nbc.hg38 C3L-05334 AML WXS buccal_normal CPT0303440002 df04ff41-e680-4a50-97fd-8b9e27252db2_wxs_gdc_realn.bam 39418047601 BAM harmonized CPTAC3 8cdf797c-dc5c-42d2-b159-92f0946be87a f6ff470dffa3e6779a09378811bd5805 {"aliquot_tag": "ALQ_90bdfc6f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05334.WXS.Tbm C3L-05334 AML WXS tumor_bone_marrow CPT0303320002 CPT0303320002.WholeExome.RP-1303.bam 22175708157 BAM aligned CPTAC3 17704711-ef4b-49a9-bcb3-b28221d8e131 345b3ff2d9beb2cf793988168729c9a4 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05334.WXS.Tbm.hg38 C3L-05334 AML WXS tumor_bone_marrow CPT0303320002 268ad7f9-d206-4f81-bbb8-d5b3037e47ab_wxs_gdc_realn.bam 30563419398 BAM harmonized CPTAC3 d8551d58-caba-4a44-9925-0553d5017411 79cf4d908a4abc8dc53382b57d1942c8 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.MethArray.Green.Tbm C3L-05335 AML Methylation_Array tumor_bone_marrow CPT0303780002 205555390128_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 dd15fcdb-103a-4f2e-89db-d4283dc45139 ea056588256fa1143e67c52f12ffb811 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.MethArray.Red.Tbm C3L-05335 AML Methylation_Array tumor_bone_marrow CPT0303780002 205555390128_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 bab53b22-4265-4c95-89c9-6ee9be77d6eb b7abdcd44d6af92d56373e9b6b1a1a31 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.miRNA-Seq.S13_L001_R1.Tbm C3L-05335 AML miRNA-Seq tumor_bone_marrow CPT0303790002 210702_UNC32-K00270_0289_AHKJ22BBXY_GGCTAC_S13_L001_R1_001.unaln.bam 229137458 BAM S13_L001_R1 unaligned CPTAC3 9bf107d6-d030-476a-8f56-564cb1a6777d 9f4932ce84c6f6fc556b08b60d652900 {"aliquot_tag": "ALQ_eeb94a70", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.miRNA-Seq.Tbm.hg38 C3L-05335 AML miRNA-Seq tumor_bone_marrow CPT0303790002 7a641685-1d3c-4f37-8527-27441694f0af_mirnaseq_gdc_realn.bam 250325948 BAM harmonized CPTAC3 d0f1c09a-4472-4331-962c-bdbe3a7eb5a9 750e4b67eb5c0dee2e17a68952033575 {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.RNA-Seq.chimeric.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.chimeric.gdc_realn.bam 230874766 BAM chimeric harmonized CPTAC3 cf2cd76d-01eb-4738-9f3b-abded1ac8c5f f148c4cbe7e318e188cd231392a3637e {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.RNA-Seq.genomic.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.genomic.gdc_realn.bam 7906694334 BAM genomic harmonized CPTAC3 f289acba-07c4-4be6-880b-f7eb2464d702 0bfc3a18af9ec6a127f85dade5ca9fed {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.RNA-Seq.S23_L006_R1.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R1_001.fastq.gz 4106093958 FASTQ S23_L006_R1 unaligned CPTAC3 96bcd3c9-b405-404c-b043-9ae0e4398765 d80464d333e7378d47324f6b21f4e56f {"aliquot_tag": "ALQ_eeb94a70", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.RNA-Seq.S23_L006_R2.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R2_001.fastq.gz 4271226200 FASTQ S23_L006_R2 unaligned CPTAC3 98a9da44-38a6-4705-9b02-f2332e487e40 e1d52986ae9e725b96138827044629d4 {"aliquot_tag": "ALQ_eeb94a70", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.RNA-Seq.transcriptome.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.transcriptome.gdc_realn.bam 9664894649 BAM transcriptome harmonized CPTAC3 659e41cc-b0f5-4255-aac7-e77548b2266d 53fa3b930d619c47a080b9b84ae99801 {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.WGS.Nbc C3L-05335 AML WGS buccal_normal CPT0303900001 CPT0303900001.WholeGenome.RP-2158.bam 54851118937 BAM aligned CPTAC3 8ed8edeb-499f-4b89-b167-f074d9b231e4 01aff9a6b1d8fcce5a612f7596f6dcdd {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05335.WGS.Nbc.hg38 C3L-05335 AML WGS buccal_normal CPT0303900001 db6412d0-5125-4730-baf5-786069bf9f6d_wgs_gdc_realn.bam 168491675145 BAM harmonized CPTAC3 76841f2b-4fd7-4071-b9d5-e5b573c876f0 98d8d412d04cde2d4972b6c7a018c547 {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05335.WGS.Tbm C3L-05335 AML WGS tumor_bone_marrow CPT0303780002 CPT0303780002.WholeGenome.RP-2158.bam 41712572364 BAM aligned CPTAC3 387ee555-d08e-4ebb-9497-5aec91e85a43 c1244bf228480d745b9e8f72d2c14288 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.WGS.Tbm.hg38 C3L-05335 AML WGS tumor_bone_marrow CPT0303780002 1c6e8c35-0a4b-478a-887d-d10356b940f3_wgs_gdc_realn.bam 121501420032 BAM harmonized CPTAC3 66e7a5d3-2eff-4840-ab1e-448203643be7 ccdc34aaf3bf071ed6172e590e2ff521 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.WXS.Nbc C3L-05335 AML WXS buccal_normal CPT0303900001 CPT0303900001.WholeExome.RP-1303.bam 20432195009 BAM aligned CPTAC3 2d46dd6f-614f-4a09-80cb-b29bda71dc7b 8323f528254bcd6a7db1421924c22d20 {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05335.WXS.Nbc.hg38 C3L-05335 AML WXS buccal_normal CPT0303900001 db6412d0-5125-4730-baf5-786069bf9f6d_wxs_gdc_realn.bam 28397070021 BAM harmonized CPTAC3 2b5cbbfe-66f9-45c1-9dea-02ae84d36b3a d78b142fb6a3e2bd83a732e3c36c3141 {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05335.WXS.Tbm C3L-05335 AML WXS tumor_bone_marrow CPT0303780002 CPT0303780002.WholeExome.RP-1303.bam 45934081947 BAM aligned CPTAC3 b1fa4aaa-8ce6-48eb-be0c-259e77ee93dc 990a6a9682272be1d0672c25776a4d33 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05335.WXS.Tbm.hg38 C3L-05335 AML WXS tumor_bone_marrow CPT0303780002 1c6e8c35-0a4b-478a-887d-d10356b940f3_wxs_gdc_realn.bam 63548466044 BAM harmonized CPTAC3 562149f9-5cac-4a4d-a8d5-d8d8276c5020 9994edba8a46c4f9007a1e4e75b0e780 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.MethArray.Green.Tbm C3L-05338 AML Methylation_Array tumor_bone_marrow CPT0303680002 205555390174_R05C01_Grn.idat 13677965 IDAT Green NA CPTAC3 c9f43c44-0797-4776-b190-7aec12ef607f 79910399513b1cb1d4196b4368495967 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.MethArray.Red.Tbm C3L-05338 AML Methylation_Array tumor_bone_marrow CPT0303680002 205555390174_R05C01_Red.idat 13677965 IDAT Red NA CPTAC3 e26c0dfe-aa17-4703-8c5f-e25ef4e52c2f f2a5b098d4677d7b587a2cb398966478 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.miRNA-Seq.S45_L008_R1.Tbm C3L-05338 AML miRNA-Seq tumor_bone_marrow CPT0303690002 210331_UNC31-K00269_0297_AHKCFKBBXY_CATTTT_S45_L008_R1_001.unaln.bam 291210175 BAM S45_L008_R1 unaligned CPTAC3 8c0459df-deeb-41cc-a209-e59e5dc4ef88 8ce5fc61dc550ccec46a4c07078ffdcf {"aliquot_tag": "ALQ_25e599d5", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.miRNA-Seq.Tbm.hg38 C3L-05338 AML miRNA-Seq tumor_bone_marrow CPT0303690002 0f78ff7c-3455-4ca5-a89a-174e41da2388_mirnaseq_gdc_realn.bam 310850103 BAM harmonized CPTAC3 17ee4ee3-d732-49e4-ae0f-7437eee98dbd 741480ef301e697129b87c164bccc2ff {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.RNA-Seq.chimeric.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.chimeric.gdc_realn.bam 62347550 BAM chimeric harmonized CPTAC3 09aae447-84ad-4549-b1aa-789dcb680a8d 6fa8ea064bf742b8a22fb28b6faf01e5 {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.RNA-Seq.genomic.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.genomic.gdc_realn.bam 6504887075 BAM genomic harmonized CPTAC3 db401667-fc70-4d5b-bd95-d92d3838753f 745d7d5646709090d9bd56475099258f {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.RNA-Seq.S30_L008_R1.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R1_001.fastq.gz 3333672847 FASTQ S30_L008_R1 unaligned CPTAC3 8241771f-9643-4930-b2e7-9a475f409c7d 73d022874a6a788ced12a1e0faa80331 {"aliquot_tag": "ALQ_25e599d5", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.RNA-Seq.S30_L008_R2.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R2_001.fastq.gz 3541389231 FASTQ S30_L008_R2 unaligned CPTAC3 2866a4a3-9138-4b5f-81f8-58f3e929f704 768d51e328c6d491640404960b72785a {"aliquot_tag": "ALQ_25e599d5", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.RNA-Seq.transcriptome.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.transcriptome.gdc_realn.bam 8850086914 BAM transcriptome harmonized CPTAC3 80640ec7-e9f6-48db-b6ba-b65048c7c118 b25be5984723f928082784f37a8e5fca {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.WGS.Nbc C3L-05338 AML WGS buccal_normal CPT0303760001 CPT0303760001.WholeGenome.RP-2158.bam 47293953932 BAM aligned CPTAC3 ed8376a6-4e91-4c12-8b53-3de7e43338bd 9176b3a47b5f7fe5553ba91e5cfe526c {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05338.WGS.Nbc.hg38 C3L-05338 AML WGS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wgs_gdc_realn.bam 145590528581 BAM harmonized CPTAC3 1e9e7855-cdb9-4b37-b3ae-44e9650f3c71 a6d1e10b730ca32fae544e95cefa501f {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05338.WGS.Tbm C3L-05338 AML WGS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeGenome.RP-2158.bam 64510996566 BAM aligned CPTAC3 9e3cf7b0-af37-4038-b126-07e7e1c7f387 f5171d4edc6e1d920279557ec36fafa1 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.WGS.Tbm.hg38 C3L-05338 AML WGS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wgs_gdc_realn.bam 180510531787 BAM harmonized CPTAC3 296b2dfb-9d7b-46c4-a848-4f96f19bb99b 52013aa9605cf9a93b55897bbad2c105 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.WXS.Nbc C3L-05338 AML WXS buccal_normal CPT0303760001 CPT0303760001.WholeExome.RP-1303.bam 29187740697 BAM aligned CPTAC3 26910fd8-ac41-4add-b4ae-1c1a2fd301b4 6d981e2b7e24bc27743506f2f5859573 {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05338.WXS.Nbc.hg38 C3L-05338 AML WXS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wxs_gdc_realn.bam 40043987846 BAM harmonized CPTAC3 1f8df55f-a261-4316-bb19-972442496f86 34820f7dfc28a42ac7e376c5d2c651ff {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05338.WXS.Tbm C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeExome.RP-1303.bam 30870352146 BAM aligned CPTAC3 8a102a76-2f4c-4ca6-a6af-1a4793b1dda9 01ce2357dc02c7e0742c1c07c5781597 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05338.WXS.Tbm.hg38 C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wxs_gdc_realn.bam 43084082849 BAM harmonized CPTAC3 0f344126-30a6-4718-bc90-4e1de755d276 2060dd6d4aec44e3ff2b8d5a20dfc58a {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05369.MethArray.Green.A C3L-05369 LSCC Methylation_Array tissue_normal CPT0294480006 204372030015_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 f5a79f0d-1a10-43d8-963c-685f261d9d66 b9796189bbec29d0836d54392b69c525 {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.MethArray.Green.T C3L-05369 LSCC Methylation_Array tumor CPT0294450006 204367470131_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fcfa9bd6-869d-4965-a42c-7ad6617544de 55e96f5e8a2f0470c1e1ffcd94f6243a {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor"} -C3L-05369.MethArray.Red.A C3L-05369 LSCC Methylation_Array tissue_normal CPT0294480006 204372030015_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 e2441776-a26a-483c-8d57-aebbd971647f 5896f469e52418e090c9bc7232d3c67b {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.MethArray.Red.T C3L-05369 LSCC Methylation_Array tumor CPT0294450006 204367470131_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 9ec5ad37-2dcb-497f-92e4-bb1cbf9dfc07 4d566258ad83d849a7b30ed7f882c294 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor"} -C3L-05369.miRNA-Seq.A.hg38 C3L-05369 LSCC miRNA-Seq tissue_normal CPT0294480009 a6045ff1-f560-4245-9d6a-6c33fac9c855_mirnaseq_gdc_realn.bam 332144186 BAM harmonized CPTAC3 b6b24ec4-5596-4143-8bfd-6f3a1e800ed0 f0e62c0691ef252cb0e48a5a14dfb235 {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.miRNA-Seq.S19_L001_R1.T C3L-05369 LSCC miRNA-Seq tumor CPT0294450009 200325_UNC31-K00269_0272_AHHC2NBBXY_TACAGC_S19_L001_R1_001.unaln.bam 214404384 BAM S19_L001_R1 unaligned CPTAC3 41f91b2e-603c-47dd-98a9-284aeffd84af 22c1f68524de7eea20da8408dd4e4e83 {"aliquot_tag": "ALQ_f79c3db1", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05369.miRNA-Seq.S37_L006_R1.A C3L-05369 LSCC miRNA-Seq tissue_normal CPT0294480009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGGAAT_S37_L006_R1_001.unaln.bam 298923371 BAM S37_L006_R1 unaligned CPTAC3 4fc9cbb0-1abc-43ba-85f7-c50da2f7fc16 1b8014bcbb16192bfbbe9346b6fa503d {"aliquot_tag": "ALQ_f0cf900", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.miRNA-Seq.T.hg38 C3L-05369 LSCC miRNA-Seq tumor CPT0294450009 cb095284-9f4b-4911-859b-68d96f6b1eeb_mirnaseq_gdc_realn.bam 236555962 BAM harmonized CPTAC3 32dc2d41-e5a9-4461-8a87-2d461d71b89e 5ee4a44672d96e7cc50b8c499c27e611 {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor"} -C3L-05369.RNA-Seq.chimeric.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.chimeric.gdc_realn.bam 33551406 BAM chimeric harmonized CPTAC3 2568ca61-658c-4394-9898-597d2b4efa7e 95ac5d4d8fd1f62822eb7b6d223ecd98 {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.RNA-Seq.chimeric.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.chimeric.gdc_realn.bam 80549148 BAM chimeric harmonized CPTAC3 1f162186-aad1-4479-a043-581f216d06a0 274dca470be3d61afc0d7a8625fba86b {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor"} -C3L-05369.RNA-Seq.genomic.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.genomic.gdc_realn.bam 8487117861 BAM genomic harmonized CPTAC3 1efc78c8-8f00-4f2d-a21b-b7492db45b81 3ee7191b7fd36828ee2245add426b4db {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.RNA-Seq.genomic.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.genomic.gdc_realn.bam 6905969106 BAM genomic harmonized CPTAC3 e9da3e64-9919-4836-b004-cde8ec413170 bd4c22edcf45b06bfdb23bc8d4699a53 {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor"} -C3L-05369.RNA-Seq.S24_L006_R1.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R1_001.fastq.gz 3843385000 FASTQ S24_L006_R1 unaligned CPTAC3 23c565cb-ff39-4479-ba64-97c7208229d7 c326656ebb885bd7cf3e7a395ec4403c {"aliquot_tag": "ALQ_f0cf900", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.RNA-Seq.S24_L006_R2.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R2_001.fastq.gz 4754527121 FASTQ S24_L006_R2 unaligned CPTAC3 9a8c552c-380a-4986-9f2d-f753e921b4fd 3d06eab17b5b4caab970444411d022c9 {"aliquot_tag": "ALQ_f0cf900", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.RNA-Seq.S27_L007_R1.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R1_001.fastq.gz 3566418089 FASTQ S27_L007_R1 unaligned CPTAC3 ba9f0249-aaf6-4c46-8dc5-ec1a00ac7f7c db5b8aaa4e8591fdce377da5724599bb {"aliquot_tag": "ALQ_f79c3db1", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05369.RNA-Seq.S27_L007_R2.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R2_001.fastq.gz 3657828327 FASTQ S27_L007_R2 unaligned CPTAC3 341a6501-69f2-414c-895f-a6f6b917dc1e 84dd6b96e268586e1f41adf6cfc1302d {"aliquot_tag": "ALQ_f79c3db1", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05369.RNA-Seq.transcriptome.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.transcriptome.gdc_realn.bam 9729688734 BAM transcriptome harmonized CPTAC3 fe3de7c4-a734-4e35-b40d-778ce6a4915c efdc49e62fee21d469f0b14f4bab658d {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.RNA-Seq.transcriptome.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.transcriptome.gdc_realn.bam 10755963826 BAM transcriptome harmonized CPTAC3 ceef9de6-d251-4167-8d97-e5da653d304f d9a55edc4a7780b658c8e8a2c6616d2e {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor"} -C3L-05369.WGS.N C3L-05369 LSCC WGS blood_normal CPT0294570002 CPT0294570002.WholeGenome.RP-2158.bam 24966812548 BAM aligned CPTAC3 d45011cb-cc8f-4973-bcb0-09c7332b85f5 af07abd4d3ad41b1582b3bdeeacdae3f {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05369.WGS.N.hg38 C3L-05369 LSCC WGS blood_normal CPT0294570002 60330a1e-b890-4080-b328-a426cc600b86_wgs_gdc_realn.bam 74854230798 BAM harmonized CPTAC3 fd313034-153a-492c-9e39-5991db231b8b 9f1fe9867e3b7d7a945c7896f757fc91 {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05369.WGS.T C3L-05369 LSCC WGS tumor CPT0294450006 CPT0294450006.WholeGenome.RP-2158.bam 26784354118 BAM aligned CPTAC3 293e5adf-8355-4331-9748-4fba8f0e393f 2d1d61d3933f123dd44333cf92567900 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor"} -C3L-05369.WGS.T.hg38 C3L-05369 LSCC WGS tumor CPT0294450006 d9f0103e-5df7-4f8e-a564-57886f38b001_wgs_gdc_realn.bam 76677003279 BAM harmonized CPTAC3 7a47cd4e-a586-4eb0-a8ce-65488b2b034e 82e0a2029667b28f5975d5f8a481301a {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor"} -C3L-05369.WXS.A C3L-05369 LSCC WXS tissue_normal CPT0294480006 CPT0294480006.WholeExome.RP-1303.bam 21216108412 BAM aligned CPTAC3 72a6bde7-9cd0-41c3-9afe-e03494e1b812 7b7813483f9d623753d32c139ed4107a {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.WXS.A.hg38 C3L-05369 LSCC WXS tissue_normal CPT0294480006 4352bbc1-4e58-4c52-9db5-93e0e8db5add_wxs_gdc_realn.bam 28923836668 BAM harmonized CPTAC3 08f19df2-9b4d-4766-a986-55dfc44c47a9 10c0b6fdb0fac9789645a4d8bbe8f2eb {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05369.WXS.N C3L-05369 LSCC WXS blood_normal CPT0294570002 CPT0294570002.WholeExome.RP-1303.bam 26241030335 BAM aligned CPTAC3 ba00f75e-adf8-4546-9997-f8ed0f657a0e 7e888b3b58e637f6dcf829e0fcec2172 {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05369.WXS.N.hg38 C3L-05369 LSCC WXS blood_normal CPT0294570002 60330a1e-b890-4080-b328-a426cc600b86_wxs_gdc_realn.bam 35671941984 BAM harmonized CPTAC3 b8139e05-7f50-4251-bfe1-aeb22fa0d2df 0e32daece3e33902ec27ef47f133f22c {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05369.WXS.T C3L-05369 LSCC WXS tumor CPT0294450006 CPT0294450006.WholeExome.RP-1303.bam 24727318124 BAM aligned CPTAC3 ca9120ab-aa99-497f-b095-0d2a4f95437f e9571f202624f830b3d2b125900370d8 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor"} -C3L-05369.WXS.T.hg38 C3L-05369 LSCC WXS tumor CPT0294450006 d9f0103e-5df7-4f8e-a564-57886f38b001_wxs_gdc_realn.bam 33845396068 BAM harmonized CPTAC3 43c332c1-41fb-4c23-b161-1bde175ded3c 7d6d6c83c57f5eeb88f774c157758b70 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor"} -C3L-05386.MethArray.Green.Tpb C3L-05386 AML Methylation_Array tumor_peripheral_blood CPT0262620001 203561450103_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5d69043c-99e9-433a-a3c6-8bccdcf8a503 b33db5ccacbb024f170c5cbc51bfbb48 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.MethArray.Red.Tpb C3L-05386 AML Methylation_Array tumor_peripheral_blood CPT0262620001 203561450103_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 38f1717f-f595-4d1c-856f-eaa6532f7622 e5574fc078a89f35b35b547f3c346849 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.miRNA-Seq.S160_L008_R1.Tpb C3L-05386 AML miRNA-Seq tumor_peripheral_blood CPT0262630002 190828_UNC32-K00270_0200_BH7GVJBBXY_GGTAGC_S160_L008_R1_001.unaln.bam 274447132 BAM S160_L008_R1 unaligned CPTAC3 b75c03df-2a12-458c-b3a1-a9fcb07de56e 379534782e627705dff6c925ced91a55 {"aliquot_tag": "ALQ_18369704", "sample": "S160", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.miRNA-Seq.Tpb.hg38 C3L-05386 AML miRNA-Seq tumor_peripheral_blood CPT0262630002 1ef3e45a-f94b-4c35-b97d-cbbc08012367_mirnaseq_gdc_realn.bam 313355596 BAM harmonized CPTAC3 efd74a9f-87e4-4569-b4b9-3bf2921240f1 ae6636fa19fcd514b040c5016fbd6879 {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.RNA-Seq.chimeric.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.chimeric.gdc_realn.bam 41570907 BAM chimeric harmonized CPTAC3 d1573cd6-9391-4a78-bbbd-ba6d9eb76f51 65d559e9df46f2707c889d0f5066d1c8 {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.RNA-Seq.genomic.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.genomic.gdc_realn.bam 9520170101 BAM genomic harmonized CPTAC3 2e67e9b9-8e6f-412b-b912-7b4f5095868a 82e3c409992b37fe39d5db5cdd3023ec {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.RNA-Seq.S10_L003_R1.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R1_001.fastq.gz 4831265670 FASTQ S10_L003_R1 unaligned CPTAC3 4fdd7460-7eab-46d5-a864-87e57245fa68 d2113543cba56dcc6e5ceb14912248c6 {"aliquot_tag": "ALQ_18369704", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.RNA-Seq.S10_L003_R2.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R2_001.fastq.gz 5221498803 FASTQ S10_L003_R2 unaligned CPTAC3 4f151513-bde8-4194-86ed-d3d9bd0b69a7 d106b7d3037c55e24f38c49c4747f0a5 {"aliquot_tag": "ALQ_18369704", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.RNA-Seq.transcriptome.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.transcriptome.gdc_realn.bam 11673242080 BAM transcriptome harmonized CPTAC3 799e31d8-454e-4f30-9fa2-c4d6ccdcb2d9 398091498cc5d9084136927ef6f9a5c8 {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.WGS.Nbc C3L-05386 AML WGS buccal_normal CPT0262610002 CPT0262610002.WholeGenome.RP-1303.bam 84391701158 BAM aligned CPTAC3 9a9935b2-2d21-46df-a29e-354f9e5a4e4e 68927c84fda27b492fab08e23f48df09 {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05386.WGS.Nbc.hg38 C3L-05386 AML WGS buccal_normal CPT0262610002 9271ecfc-7bb8-4e93-9b7c-11c500666325_wgs_gdc_realn.bam 119448197945 BAM harmonized CPTAC3 53b93788-0e38-4cb9-b5f2-818b0488012e 357456ce4b1ad8a44ce699618034f57f {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05386.WGS.Tpb C3L-05386 AML WGS tumor_peripheral_blood CPT0262620001 CPT0262620001.WholeGenome.RP-1303.bam 72320206451 BAM aligned CPTAC3 6aed8445-69f8-4392-b669-b3e6e4612a41 ab8742fd65837386b7c3b1e561cdf057 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.WGS.Tpb.hg38 C3L-05386 AML WGS tumor_peripheral_blood CPT0262620001 e0497046-63a5-4b92-b60f-39b07deae642_wgs_gdc_realn.bam 105969611759 BAM harmonized CPTAC3 f47fe90d-7a83-4f95-9c44-0c4ebc39d6b3 50469d57305f26fbef1c3501159cb156 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.WXS.Nbc C3L-05386 AML WXS buccal_normal CPT0262610002 CPT0262610002.WholeExome.RP-1303.bam 23519142481 BAM aligned CPTAC3 e33084ce-62cb-49b3-8b58-f7a9dc5462b5 8eabb753a6b5b7de270e1c487b397d6f {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05386.WXS.Nbc.hg38 C3L-05386 AML WXS buccal_normal CPT0262610002 9271ecfc-7bb8-4e93-9b7c-11c500666325_wxs_gdc_realn.bam 32712126516 BAM harmonized CPTAC3 8236c897-0ac6-4158-b6b9-0335142cf267 7c9e2b7043775e44cf8a570c80a25118 {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05386.WXS.Tpb C3L-05386 AML WXS tumor_peripheral_blood CPT0262620001 CPT0262620001.WholeExome.RP-1303.bam 17187190188 BAM aligned CPTAC3 09bb55a7-8481-4ca6-aa9d-996390f52107 0fba3b23d13ad92ee1b860b4be95b226 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05386.WXS.Tpb.hg38 C3L-05386 AML WXS tumor_peripheral_blood CPT0262620001 e0497046-63a5-4b92-b60f-39b07deae642_wxs_gdc_realn.bam 23352315586 BAM harmonized CPTAC3 ad4db99e-f314-4049-915d-d80b7d6920d8 86a5b3644ebd4442ec99702a900257c6 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.MethArray.Green.Tpb C3L-05387 AML Methylation_Array tumor_peripheral_blood CPT0275090002 205987780161_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b5378fff-0286-434a-bbdb-da7a0068a8b9 a0994637c2c1771d89624e01e7c6d73a {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.MethArray.Red.Tpb C3L-05387 AML Methylation_Array tumor_peripheral_blood CPT0275090002 205987780161_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 673879c4-58bf-41f1-8574-748bbb2471c4 2f86e063b100c1a9a8c6d987eb4bc458 {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.miRNA-Seq.S7_L001_R1.Tpb C3L-05387 AML miRNA-Seq tumor_peripheral_blood CPT0275130002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATTTT_S7_L001_R1_001.unaln.bam 298465319 BAM S7_L001_R1 unaligned CPTAC3 630d208b-adb4-413b-b6aa-48bf8905fd50 8d54c228acb7e7384491506ee7c57d14 {"aliquot_tag": "ALQ_c3e99ac", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.miRNA-Seq.Tpb.hg38 C3L-05387 AML miRNA-Seq tumor_peripheral_blood CPT0275130002 f430fc97-5bbf-4f9b-bb22-52c4f9475a3f_mirnaseq_gdc_realn.bam 327933147 BAM harmonized CPTAC3 1fae3b67-999d-4f85-bfb7-bfa8df502d2b ed726eddabf26c8983185487ab7d86fc {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.RNA-Seq.chimeric.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.chimeric.gdc_realn.bam 666833248 BAM chimeric harmonized CPTAC3 71bdd64d-a6c7-497c-8e4f-1431b9464aec 58b86e905eadba8bef4a56ccce911d33 {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.RNA-Seq.genomic.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.genomic.gdc_realn.bam 7347126367 BAM genomic harmonized CPTAC3 033b5afb-eefb-4b11-9216-72c518bd67a7 64a8649968a60d190236b5b1fb3fce86 {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.RNA-Seq.S13_L004_R1.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R1_001.fastq.gz 3552138579 FASTQ S13_L004_R1 unaligned CPTAC3 9079bc71-b14d-4ae8-9ce3-023aa2f2ff11 c916de42ba83f6ac84d5296c6c359477 {"aliquot_tag": "ALQ_c3e99ac", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.RNA-Seq.S13_L004_R2.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R2_001.fastq.gz 3882337040 FASTQ S13_L004_R2 unaligned CPTAC3 68a5d6f0-e119-426f-a564-b94fbf5ceb59 8e499c9d5396b1028a0e885e9c2dbd93 {"aliquot_tag": "ALQ_c3e99ac", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.RNA-Seq.transcriptome.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.transcriptome.gdc_realn.bam 7952250491 BAM transcriptome harmonized CPTAC3 04ebdc8c-fe7b-47d0-9c92-0e63668abf87 7986ace27d63fe7ec0ec21da60e4a2e3 {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.WGS.Nbc C3L-05387 AML WGS buccal_normal CPT0275080001 CPT0275080001.WholeGenome.RP-2158.bam 44651253231 BAM aligned CPTAC3 fecf52b4-a3f7-4e11-a384-4f52325fddbe 9a688cb88f8e0546442d2c05963931a6 {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05387.WGS.Nbc.hg38 C3L-05387 AML WGS buccal_normal CPT0275080001 34b3bbed-c713-4a6b-ab3d-e3b04d33c731_wgs_gdc_realn.bam 400133768733 BAM harmonized CPTAC3 4ddeb513-59b0-4e4b-b1e5-61cf1f7fb6fe e178dddbb0ed1d50a3c681a36146538a {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05387.WGS.Tpb C3L-05387 AML WGS tumor_peripheral_blood CPT0275090002 CPT0275090002.WholeGenome.RP-2158.bam 52291271279 BAM aligned CPTAC3 10ea385c-66dc-47d9-b3b3-886561f2e207 72d83a89882ef2f7e6aa34aac53be4e6 {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.WGS.Tpb.hg38 C3L-05387 AML WGS tumor_peripheral_blood CPT0275090002 431ccf9c-42b9-480a-9aac-0cbfb7536a3a_wgs_gdc_realn.bam 154942526484 BAM harmonized CPTAC3 0520ac98-e70b-4ed0-a3cb-d9ffc1552369 799b80de89174cc54adf0bd4cb0ad0ed {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.WXS.Nbc C3L-05387 AML WXS buccal_normal CPT0275080001 CPT0275080001.WholeExome.RP-1303.bam 26721993786 BAM aligned CPTAC3 11f96ebf-4962-4f6b-80cd-f94737ca1a3d 230919e73081c24e5d14c1d0d42c8df4 {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05387.WXS.Nbc.hg38 C3L-05387 AML WXS buccal_normal CPT0275080001 34b3bbed-c713-4a6b-ab3d-e3b04d33c731_wxs_gdc_realn.bam 37711680308 BAM harmonized CPTAC3 244bf8e7-c556-45ac-89b8-7f2fb94e2ea6 c48614437228e54b3a12b4ef0644d019 {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05387.WXS.Tpb C3L-05387 AML WXS tumor_peripheral_blood CPT0275090002 CPT0275090002.WholeExome.RP-1303.bam 25699517261 BAM aligned CPTAC3 1c2d05f4-e728-4df5-9a5b-cf0632b50408 8e8d7e8c8015a62e643b1da3e82fe8bd {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05387.WXS.Tpb.hg38 C3L-05387 AML WXS tumor_peripheral_blood CPT0275090002 431ccf9c-42b9-480a-9aac-0cbfb7536a3a_wxs_gdc_realn.bam 35598798050 BAM harmonized CPTAC3 59889aba-57ce-481c-846c-47ca04ea6ece a7d5f9c8bf69f72707c2f9a0615c5347 {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05392.MethArray.Green.A C3L-05392 LSCC Methylation_Array tissue_normal CPT0291650006 204367490043_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e4943865-2992-4bfe-abe3-be20b504eaa6 f82af29769c1038a54d0a36cc9dc1711 {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.MethArray.Green.T C3L-05392 LSCC Methylation_Array tumor CPT0291630006 204367490093_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6d9b4672-c645-4974-a855-c20304dfe680 04fe15ea35640dc82d8dafeaca6715c6 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor"} -C3L-05392.MethArray.Red.A C3L-05392 LSCC Methylation_Array tissue_normal CPT0291650006 204367490043_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 b2c69dca-9b74-41ab-9278-da57c9db35ae e2d663a9a85f6ea6e0b4180e23118ca7 {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.MethArray.Red.T C3L-05392 LSCC Methylation_Array tumor CPT0291630006 204367490093_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 df4bac2f-67e7-4eda-8fdd-b489b0a22be6 20a2c24c3d5ba6fe50e5024b68d714d3 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor"} -C3L-05392.miRNA-Seq.A.hg38 C3L-05392 LSCC miRNA-Seq tissue_normal CPT0291650009 6b65d0b5-e056-4859-812b-4e7633bc7209_mirnaseq_gdc_realn.bam 197979085 BAM harmonized CPTAC3 edbdaca7-16fc-4954-84a1-b2a2feae2803 a5c639033b6d8a939f63ed58f6b9c155 {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.miRNA-Seq.S33_L006_R1.A C3L-05392 LSCC miRNA-Seq tissue_normal CPT0291650009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAGGCG_S33_L006_R1_001.unaln.bam 175455034 BAM S33_L006_R1 unaligned CPTAC3 be6d8666-d594-42b9-8543-e05ab2312ece 6ca50302dc2d060332b5a4e5ff0b1bf4 {"aliquot_tag": "ALQ_e86cb31d", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.miRNA-Seq.S4_L001_R1.T C3L-05392 LSCC miRNA-Seq tumor CPT0291630009 200325_UNC31-K00269_0272_AHHC2NBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 198358022 BAM S4_L001_R1 unaligned CPTAC3 ecde02aa-9c6c-4174-b417-48c67d74e720 7cbeb32b4d5f32cfdc48f0e2bd1024b4 {"aliquot_tag": "ALQ_672c46bd", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05392.miRNA-Seq.T.hg38 C3L-05392 LSCC miRNA-Seq tumor CPT0291630009 5df162d1-cfe4-401b-8b2d-9c1400d6b387_mirnaseq_gdc_realn.bam 222906673 BAM harmonized CPTAC3 7ccbc0dc-368f-42d6-bbba-8adb04ff5e12 3b0510a29338ee3419b0e4eeeaa4b25d {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor"} -C3L-05392.RNA-Seq.chimeric.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.chimeric.gdc_realn.bam 33477624 BAM chimeric harmonized CPTAC3 6fbe9d35-318f-4a60-b621-37ec63b82f25 3c9ac688fc3c5b675f274da8882da687 {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.RNA-Seq.chimeric.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.chimeric.gdc_realn.bam 127724772 BAM chimeric harmonized CPTAC3 7bf8ed8c-75cc-457d-aa59-8553000f2572 8883b3e414cea46b4ec4657c09632c00 {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor"} -C3L-05392.RNA-Seq.genomic.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.genomic.gdc_realn.bam 8863756412 BAM genomic harmonized CPTAC3 6b73e767-a5fe-4fd7-9b9e-993f5fc0c111 94a36cda743f81ad49c0bfd7ff21fe80 {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.RNA-Seq.genomic.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.genomic.gdc_realn.bam 8133192376 BAM genomic harmonized CPTAC3 97e3b87f-7a4b-47bf-9d84-313908c7ed07 c56ff3edcfc10cae0da365e70c05b5e8 {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor"} -C3L-05392.RNA-Seq.S12_L003_R1.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R1_001.fastq.gz 4109366063 FASTQ S12_L003_R1 unaligned CPTAC3 a09393b8-579c-4c23-aaf9-0601c79d9bca d6456fd8df3cd39b593e4e5dab0aa77c {"aliquot_tag": "ALQ_672c46bd", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05392.RNA-Seq.S12_L003_R2.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R2_001.fastq.gz 4321086964 FASTQ S12_L003_R2 unaligned CPTAC3 1c3d507a-a999-446e-a60c-f1d0861764ee 47fbe7de7ecf697f6ad76056d2c6a565 {"aliquot_tag": "ALQ_672c46bd", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05392.RNA-Seq.S20_L005_R1.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R1_001.fastq.gz 3855943575 FASTQ S20_L005_R1 unaligned CPTAC3 359e3754-8a38-4bb2-ab30-f45104721810 de0695cc9f97993699daf35d522085a1 {"aliquot_tag": "ALQ_e86cb31d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.RNA-Seq.S20_L005_R2.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R2_001.fastq.gz 4857414271 FASTQ S20_L005_R2 unaligned CPTAC3 dca97796-2c4c-4d14-8074-a9614c031baf d3d6c7efd1f417555f754850af3ea80f {"aliquot_tag": "ALQ_e86cb31d", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.RNA-Seq.transcriptome.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.transcriptome.gdc_realn.bam 9527933149 BAM transcriptome harmonized CPTAC3 9af6af3a-534d-40d7-986a-63138f48b7c5 3e967ad65ee676f330ab353ae869a1ea {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.RNA-Seq.transcriptome.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.transcriptome.gdc_realn.bam 11449562732 BAM transcriptome harmonized CPTAC3 9607041b-7403-4427-a7c9-c23d8dbd9521 d1146f4281db94d5fd8a4192c1e28a8c {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor"} -C3L-05392.WGS.N C3L-05392 LSCC WGS blood_normal CPT0291760002 CPT0291760002.WholeGenome.RP-2158.bam 24914133422 BAM aligned CPTAC3 d83e9394-8f7d-4a75-a2ab-15aa2988911c e6cf8a01411897fbe046ea58c57128d4 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05392.WGS.N.hg38 C3L-05392 LSCC WGS blood_normal CPT0291760002 74d7b8bf-5f4b-4e3e-841e-5d59c2afba8a_wgs_gdc_realn.bam 73845649668 BAM harmonized CPTAC3 1b5199ab-2746-4ae7-ba6a-aacdf07a0429 e0364f88436f2896171333cf650d34b1 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05392.WGS.T C3L-05392 LSCC WGS tumor CPT0291630006 CPT0291630006.WholeGenome.RP-2158.bam 23806348550 BAM aligned CPTAC3 3b63f153-6139-448d-aef3-3834c5f9f27c cc3c4954a67be5a3b9211643ff7f5f23 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor"} -C3L-05392.WGS.T.hg38 C3L-05392 LSCC WGS tumor CPT0291630006 345fba5f-2345-40ab-9d42-ffd0a47db599_wgs_gdc_realn.bam 71296704798 BAM harmonized CPTAC3 309533ab-d9a0-45eb-af78-d80eca0bcd5f ccec747f641b5dd8b204caf275e2212a {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor"} -C3L-05392.WXS.A C3L-05392 LSCC WXS tissue_normal CPT0291650006 CPT0291650006.WholeExome.RP-1303.bam 25155561823 BAM aligned CPTAC3 6f53d7a2-54bd-4caf-9fd5-2ecb4fbdee15 ba50b4d25bf71300949d596103af541d {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.WXS.A.hg38 C3L-05392 LSCC WXS tissue_normal CPT0291650006 59bf91a0-a7cb-4884-acc3-7c26b889e42d_wxs_gdc_realn.bam 35255214698 BAM harmonized CPTAC3 80923066-a6a3-4778-978b-91dc1b323077 0f148cb933a0274b259017bde8436c2f {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05392.WXS.N C3L-05392 LSCC WXS blood_normal CPT0291760002 CPT0291760002.WholeExome.RP-1303.bam 26780582386 BAM aligned CPTAC3 224a3baa-7897-43e0-8319-8853697dcf5f f02e52426903dd8474b19b58128ece08 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05392.WXS.N.hg38 C3L-05392 LSCC WXS blood_normal CPT0291760002 74d7b8bf-5f4b-4e3e-841e-5d59c2afba8a_wxs_gdc_realn.bam 36251474159 BAM harmonized CPTAC3 3c1747f9-b395-4f57-9c6d-3fd731fa0c78 616ac09320dedf489ff484c0f2546e67 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05392.WXS.T C3L-05392 LSCC WXS tumor CPT0291630006 CPT0291630006.WholeExome.RP-1303.bam 24036915098 BAM aligned CPTAC3 df4e4b90-f2c6-4fb8-8aa3-a404b6c15a87 84424b1924cb49b718245a9f9da69ced {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor"} -C3L-05392.WXS.T.hg38 C3L-05392 LSCC WXS tumor CPT0291630006 345fba5f-2345-40ab-9d42-ffd0a47db599_wxs_gdc_realn.bam 32466654641 BAM harmonized CPTAC3 55674770-033e-409b-8848-fab55bf0aefc e1fa30f20186bf332e56cbac0c749339 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor"} -C3L-05393.MethArray.Green.A C3L-05393 LSCC Methylation_Array tissue_normal CPT0290320006 204367490029_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1d32c09e-d59a-47f5-873f-0ea40dcbfc61 5e5ee64d072d0ffeb6ace2248cd6eb76 {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.MethArray.Green.T C3L-05393 LSCC Methylation_Array tumor CPT0290280006 204372030015_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 cc809b99-01c4-4ace-b7af-297a338eb2ae 6344d3aeb51046ae5f6042c3f7d8da95 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor"} -C3L-05393.MethArray.Red.A C3L-05393 LSCC Methylation_Array tissue_normal CPT0290320006 204367490029_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 75a7dbe6-12ee-4d3c-a4a2-8a30413e30ee bb59f2925686e4f846e0cd96763845fb {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.MethArray.Red.T C3L-05393 LSCC Methylation_Array tumor CPT0290280006 204372030015_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 05d068c9-a079-484f-bbfa-4f58f5dd38c2 6dde0520e389091a5dee473171d1fd63 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor"} -C3L-05393.miRNA-Seq.A.hg38 C3L-05393 LSCC miRNA-Seq tissue_normal CPT0290320009 fc22af7e-9c49-4ee2-baa1-a926f0df35f1_mirnaseq_gdc_realn.bam 324474160 BAM harmonized CPTAC3 1ea3360d-adba-441f-8e71-4a9c14c8ff79 4fe23e6af1fd82c63bb8c1765d6cb601 {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.miRNA-Seq.S1_L001_R1.T C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGAGC_S1_L001_R1_001.unaln.bam 143249433 BAM S1_L001_R1 unaligned CPTAC3 bf4ed63a-209e-4a22-8004-f80b0352815b bb5ca3eb0f19c1d6eaae6f6d1555ff2c {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05393.miRNA-Seq.S2_L001_R1.T C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 200325_UNC31-K00269_0272_AHHC2NBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 161582929 BAM S2_L001_R1 unaligned CPTAC3 6d56707f-1228-46cb-b2c7-5fac92d9b03f 7881c758956d5b763ea025dfdc28a444 {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05393.miRNA-Seq.S31_L006_R1.A C3L-05393 LSCC miRNA-Seq tissue_normal CPT0290320009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACGAT_S31_L006_R1_001.unaln.bam 292359300 BAM S31_L006_R1 unaligned CPTAC3 ee36f3a8-9d30-4382-91ee-8aa98c19cebf 73ca64516b58e619ad4e0931e32f071b {"aliquot_tag": "ALQ_acf6f50a", "sample": "S31", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.miRNA-Seq.T.hg38 C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 57e82e40-197a-4611-b409-0b2afd579a91_mirnaseq_gdc_realn.bam 349737022 BAM harmonized CPTAC3 a9f68953-7aaa-48cb-9a75-851fe1d915e8 d1c76db48a2e10afd1412d4117828767 {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor"} -C3L-05393.RNA-Seq.chimeric.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.chimeric.gdc_realn.bam 27717025 BAM chimeric harmonized CPTAC3 08de02fb-960b-44a9-bc0d-4671900594e8 8a50c20945b0faf47f9ed01887971a09 {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.RNA-Seq.chimeric.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.chimeric.gdc_realn.bam 145218422 BAM chimeric harmonized CPTAC3 e60eddfc-9352-4ae6-a458-a0823273535f 238619d5a4a328762eddf17f6d82c29e {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor"} -C3L-05393.RNA-Seq.genomic.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.genomic.gdc_realn.bam 7707277080 BAM genomic harmonized CPTAC3 649b1426-5c10-405f-8733-9e66c9e75079 0d1f9c99759359b128180f495e58ae6a {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.RNA-Seq.genomic.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.genomic.gdc_realn.bam 7756700946 BAM genomic harmonized CPTAC3 dc3bc6e7-8f1c-4ee1-b3db-7aecd33d2430 4abd2a3f73a938e07f34ba1ef59d3efd {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor"} -C3L-05393.RNA-Seq.S10_L003_R1.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 3895478243 FASTQ S10_L003_R1 unaligned CPTAC3 a556603a-5bd3-43db-9ebd-1699738d2b6c 90c979ada1fdb13a1e121916aacbad92 {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05393.RNA-Seq.S10_L003_R2.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4153209470 FASTQ S10_L003_R2 unaligned CPTAC3 fb564896-7d1f-494d-bb2d-da4dd09dd1f5 481358563068846e80179000115539d5 {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05393.RNA-Seq.S15_L004_R1.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3453640744 FASTQ S15_L004_R1 unaligned CPTAC3 b4c58689-6157-4915-a5e8-e2d2016488ee 1f5960d4090eb4d76ca5a6a6058a60fd {"aliquot_tag": "ALQ_acf6f50a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.RNA-Seq.S15_L004_R2.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4119153049 FASTQ S15_L004_R2 unaligned CPTAC3 bac04af1-f7b1-4e50-a673-3aa24bd26922 9288a6253e1d11d502b0457c08dd6cda {"aliquot_tag": "ALQ_acf6f50a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.RNA-Seq.transcriptome.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.transcriptome.gdc_realn.bam 9074869649 BAM transcriptome harmonized CPTAC3 5066acaa-df8e-4071-925f-3404bd601ef3 15803f0713fbf6bb3b713f3be877a92a {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.RNA-Seq.transcriptome.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.transcriptome.gdc_realn.bam 12754030184 BAM transcriptome harmonized CPTAC3 245fac10-5e3e-426d-8ebe-a7c7d8394d11 a33c5d015a0afa6fd979e750298940fe {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor"} -C3L-05393.WGS.N C3L-05393 LSCC WGS blood_normal CPT0291290002 CPT0291290002.WholeGenome.RP-2158.bam 36053093360 BAM aligned CPTAC3 62bf051a-4479-441c-8a19-c39bfc635713 9422a363b0424cab8eeeeed9473c3b52 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal"} -C3L-05393.WGS.N C3L-05393 LSCC WGS blood_normal CPT0291290002 CPT0291290002.WholeGenome.RP-2158.bam 36111111145 BAM aligned CPTAC3 70d39eb6-7162-4cb4-b839-0ccadfa3b5f8 12e26ba310b2e5108423e7d8c6e053b8 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal"} -C3L-05393.WGS.N.hg38 C3L-05393 LSCC WGS blood_normal CPT0291290002 7269aee9-f189-4c9a-b48d-1425ee35e613_wgs_gdc_realn.bam 108828980923 BAM harmonized CPTAC3 59b8c0b8-7499-4bd3-b267-17d81f32b6b5 fe31974536faf612d2254283c0940c83 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal"} -C3L-05393.WGS.T C3L-05393 LSCC WGS tumor CPT0290280006 CPT0290280006.WholeGenome.RP-2158.bam 25554045184 BAM aligned CPTAC3 77545a0a-f712-4f77-90f3-3e11dec9f6bd eb6fcccc15dd0406b50acd61be9818e7 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor"} -C3L-05393.WGS.T.hg38 C3L-05393 LSCC WGS tumor CPT0290280006 07739423-62a4-4b10-a9ce-de37a40ece88_wgs_gdc_realn.bam 75911524851 BAM harmonized CPTAC3 33ef5b1e-3163-41e2-b8f3-056172b5e654 13a6324db5995caed6d4db10fc68a5e7 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor"} -C3L-05393.WXS.A C3L-05393 LSCC WXS tissue_normal CPT0290320006 CPT0290320006.WholeExome.RP-1303.bam 27268091527 BAM aligned CPTAC3 4dab4f9c-7079-4b23-a877-b148ffdcdb7a cbea451992780be27aee421e67a74c0d {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.WXS.A.hg38 C3L-05393 LSCC WXS tissue_normal CPT0290320006 bb384eb8-cc46-4e94-8152-b849b04c9b37_wxs_gdc_realn.bam 37962473629 BAM harmonized CPTAC3 442e63b4-800d-4056-8347-21a65bb693d4 e1296634471853385df6bba231d84355 {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05393.WXS.N C3L-05393 LSCC WXS blood_normal CPT0291290002 CPT0291290002.WholeExome.RP-1303.bam 25291640186 BAM aligned CPTAC3 203b0362-1004-4bc8-8c1c-9ccca51ec425 4375cc2bede9fa54d2277c4bf6dc81bb {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal"} -C3L-05393.WXS.N.hg38 C3L-05393 LSCC WXS blood_normal CPT0291290002 7269aee9-f189-4c9a-b48d-1425ee35e613_wxs_gdc_realn.bam 33817222088 BAM harmonized CPTAC3 03b2b28f-19f2-4d74-87aa-1051a41b3128 41f09858a3940feabb8af99e3d7e1405 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal"} -C3L-05393.WXS.T C3L-05393 LSCC WXS tumor CPT0290280006 CPT0290280006.WholeExome.RP-1303.bam 22510925701 BAM aligned CPTAC3 a9b6e06f-b1ad-414e-aa53-5de5b616ecaa ae68a7814f2d70cc4ca7d15930e92b97 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor"} -C3L-05393.WXS.T.hg38 C3L-05393 LSCC WXS tumor CPT0290280006 07739423-62a4-4b10-a9ce-de37a40ece88_wxs_gdc_realn.bam 30931951846 BAM harmonized CPTAC3 6b5e6508-4d27-4b2f-8cf7-8c92bff08893 b7fa3512183f048fa623a9182d68046b {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor"} -C3L-05394.MethArray.Green.A C3L-05394 LSCC Methylation_Array tissue_normal CPT0291470006 204367490029_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6576020e-9743-410d-9045-a83813c3c900 a0505bd8963570c5ed424e6e4358d33a {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.MethArray.Green.T C3L-05394 LSCC Methylation_Array tumor CPT0291310006 204372030024_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 f16b31b2-9115-42d2-bada-9558d5e5f501 2bff90bf3cdb77cac0ba573e02546b68 {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor"} -C3L-05394.MethArray.Red.A C3L-05394 LSCC Methylation_Array tissue_normal CPT0291470006 204367490029_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 c5430109-4558-4e10-9908-185184863b37 72f675f6282dcef54f30fa94407f4099 {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.MethArray.Red.T C3L-05394 LSCC Methylation_Array tumor CPT0291310006 204372030024_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 18c77e2f-50fb-4e93-b9e5-b53ed82c8fe0 536f4339199ee1131ab4eb2b1cec7499 {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor"} -C3L-05394.miRNA-Seq.A.hg38 C3L-05394 LSCC miRNA-Seq tissue_normal CPT0291470009 541dd904-eb6e-46bd-8ac6-e81b5af2d5f9_mirnaseq_gdc_realn.bam 294014583 BAM harmonized CPTAC3 86b19e89-f3ee-43d2-8b4d-d0d69661792a b8334d7febc1ad966977c35f094b71bc {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.miRNA-Seq.S2_L001_R1.T C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L001_R1_001.unaln.bam 135528627 BAM S2_L001_R1 unaligned CPTAC3 417a9012-f772-4948-862e-49080422e1e8 82128a37050178dc0f95e709db56f313 {"aliquot_tag": "ALQ_4d21846e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05394.miRNA-Seq.S32_L006_R1.A C3L-05394 LSCC miRNA-Seq tissue_normal CPT0291470009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACTCA_S32_L006_R1_001.unaln.bam 261587417 BAM S32_L006_R1 unaligned CPTAC3 1289c18c-0ac7-4850-81d2-4826d65e9722 bc50f3f747242db0fd6d291e776909ed {"aliquot_tag": "ALQ_df644176", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.miRNA-Seq.S3_L001_R1.T C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 200325_UNC31-K00269_0272_AHHC2NBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 148926599 BAM S3_L001_R1 unaligned CPTAC3 f618b210-587b-494f-abb0-ea39465b3588 db5a87ef32e31828ff97169398ff734f {"aliquot_tag": "ALQ_4d21846e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05394.miRNA-Seq.T.hg38 C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 2fd0bfaa-fd4b-473f-a164-9dd929079073_mirnaseq_gdc_realn.bam 310104649 BAM harmonized CPTAC3 1af907cd-6f68-450e-b813-c792f9ba8072 208003eb232e7f52c3612f8ff9ade67e {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor"} -C3L-05394.RNA-Seq.chimeric.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.chimeric.gdc_realn.bam 34621438 BAM chimeric harmonized CPTAC3 ad93e862-8a5c-4e69-8786-76c807a843f1 c252d104fe38f559fdaee3728fb4ac1a {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.RNA-Seq.chimeric.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.chimeric.gdc_realn.bam 162021695 BAM chimeric harmonized CPTAC3 3ca03feb-a119-4aed-80f7-3046d7d40520 fa7ef33a54ce94b1973b692e7088710d {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor"} -C3L-05394.RNA-Seq.genomic.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.genomic.gdc_realn.bam 7982388630 BAM genomic harmonized CPTAC3 751f33b3-7972-482f-978d-59068f5ef6d1 b50c529c039478c13754bf5a6cec18b4 {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.RNA-Seq.genomic.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.genomic.gdc_realn.bam 7263056352 BAM genomic harmonized CPTAC3 34c369f4-fa4b-4476-90d4-c2218091cf99 9331cbc8c391a6586735e85505613fea {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor"} -C3L-05394.RNA-Seq.S11_L003_R1.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R1_001.fastq.gz 3692123957 FASTQ S11_L003_R1 unaligned CPTAC3 0b944030-64c1-4363-96f5-9ea000c7e7d7 e2d4a046b0798b8f10849ca1fb53e48f {"aliquot_tag": "ALQ_4d21846e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05394.RNA-Seq.S11_L003_R2.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R2_001.fastq.gz 3889134637 FASTQ S11_L003_R2 unaligned CPTAC3 8e103b76-ff3a-4295-9043-aeab73954d21 b74fd579b2b67dc9a7530493d8814f19 {"aliquot_tag": "ALQ_4d21846e", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05394.RNA-Seq.S13_L004_R1.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 3695094357 FASTQ S13_L004_R1 unaligned CPTAC3 d45c61c9-dbeb-4b69-99f2-cb3fc507d2e4 82c743e6cdd2e02235ea4d60185d9834 {"aliquot_tag": "ALQ_df644176", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.RNA-Seq.S13_L004_R2.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4457552008 FASTQ S13_L004_R2 unaligned CPTAC3 76e1c6df-9cd5-4ba2-857f-48fb3a3f24a3 b0ee10eb8cdbc8cfa719292784c5dced {"aliquot_tag": "ALQ_df644176", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.RNA-Seq.transcriptome.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.transcriptome.gdc_realn.bam 8837587110 BAM transcriptome harmonized CPTAC3 7e233b37-6b03-4954-9ffe-e3ea57cceeb1 fd4d09f96e1d7277b2d4c5feadd693f3 {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.RNA-Seq.transcriptome.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.transcriptome.gdc_realn.bam 11531986091 BAM transcriptome harmonized CPTAC3 490a9d90-5f2d-4326-b0c3-2be3dcc85f45 58ad3a5b803e781465385806a6e0101d {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor"} -C3L-05394.WGS.N C3L-05394 LSCC WGS blood_normal CPT0291580002 CPT0291580002.WholeGenome.RP-2158.bam 29237077219 BAM aligned CPTAC3 e8168ade-b21c-4f25-944c-9ec9071fd3dc ea5a3be1f942e20cd514dfccb7c090f6 {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05394.WGS.N.hg38 C3L-05394 LSCC WGS blood_normal CPT0291580002 9b3dd1c0-f10d-41a8-8dfd-3a069eb847ce_wgs_gdc_realn.bam 86067227450 BAM harmonized CPTAC3 b5981ecb-e6bb-4c3b-aaf1-2cac92483bf8 34982803bf99f590821ac21a62c5e8ca {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05394.WGS.T C3L-05394 LSCC WGS tumor CPT0291310006 CPT0291310006.WholeGenome.RP-2158.bam 24070384674 BAM aligned CPTAC3 390b128b-7731-40b1-8234-7d768dd895b4 648e80223fb66ae733991c434050ee25 {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor"} -C3L-05394.WGS.T.hg38 C3L-05394 LSCC WGS tumor CPT0291310006 72bc503d-d1c6-443a-a983-db1eb773c3d6_wgs_gdc_realn.bam 68332351002 BAM harmonized CPTAC3 a02b7815-fd4e-4a5c-b42a-3d4e5bb59346 649dd1e47f9ce538248920f5a3f5797b {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor"} -C3L-05394.WXS.A C3L-05394 LSCC WXS tissue_normal CPT0291470006 CPT0291470006.WholeExome.RP-1303.bam 39540660403 BAM aligned CPTAC3 c732a001-9eb7-4e51-94e5-7b3bddb24755 c4cd7d908f91c3e9db15a84793888236 {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.WXS.A.hg38 C3L-05394 LSCC WXS tissue_normal CPT0291470006 36f8a33c-3112-4139-aa3a-9696db893b7d_wxs_gdc_realn.bam 55555954824 BAM harmonized CPTAC3 3accffef-4822-4ae2-803f-44abbe3f0a0f 4154c679536b543d2bb42c6793b657dd {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05394.WXS.N C3L-05394 LSCC WXS blood_normal CPT0291580002 CPT0291580002.WholeExome.RP-1303.bam 30922185737 BAM aligned CPTAC3 9ed66654-d524-4de7-8881-2619947b9fbb b288857a41691f08df2f4e8fb52465f8 {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05394.WXS.N.hg38 C3L-05394 LSCC WXS blood_normal CPT0291580002 9b3dd1c0-f10d-41a8-8dfd-3a069eb847ce_wxs_gdc_realn.bam 41283848540 BAM harmonized CPTAC3 92279fdc-602b-4ca8-8b1a-349ca7d1c358 dec8a706b182666f1121041bf83e1648 {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal"} -C3L-05394.WXS.T C3L-05394 LSCC WXS tumor CPT0291310006 CPT0291310006.WholeExome.RP-1303.bam 19228086514 BAM aligned CPTAC3 bd129931-5108-4d8e-81fe-d28447171d9a 592d7de405b077b39e7ed2ceed92e7aa {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor"} -C3L-05394.WXS.T.hg38 C3L-05394 LSCC WXS tumor CPT0291310006 72bc503d-d1c6-443a-a983-db1eb773c3d6_wxs_gdc_realn.bam 25932983372 BAM harmonized CPTAC3 a3106845-5fda-4228-a746-2aeeab0af29e 40e52fc09514ea8cadfd3a5793b3b7ea {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor"} -C3L-05397.MethArray.Green.A C3L-05397 LSCC Methylation_Array tissue_normal CPT0289970006 204372030139_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f71f8223-a362-42df-a4c2-d80ace5e7668 d25a333ec16e3011c6f99ec17428dd1e {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.MethArray.Green.T C3L-05397 LSCC Methylation_Array tumor CPT0289940006 204367470157_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 63932a75-8be8-466b-af35-3d1d58778559 425c3d65b6024876a61254ede9606815 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor"} -C3L-05397.MethArray.Red.A C3L-05397 LSCC Methylation_Array tissue_normal CPT0289970006 204372030139_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 d3c1b475-221a-42a1-9c64-affebaf397e2 89d2e54312c5dc600ed0a7be76727de6 {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.MethArray.Red.T C3L-05397 LSCC Methylation_Array tumor CPT0289940006 204367470157_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 e9ff38d3-2060-400c-9cf4-706d0c9f1567 282a4defbf9a4ebf689a6538a8ff0b67 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor"} -C3L-05397.miRNA-Seq.A.hg38 C3L-05397 LSCC miRNA-Seq tissue_normal CPT0289970009 63467abd-b13f-4657-8dbd-e6452e2c3325_mirnaseq_gdc_realn.bam 242562457 BAM harmonized CPTAC3 0f7a95ff-4115-4541-abba-309000996323 4edaed7b411bb9ce3b2b31ca6fa83061 {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.miRNA-Seq.S1_L001_R1.T C3L-05397 LSCC miRNA-Seq tumor CPT0289940009 200325_UNC31-K00269_0272_AHHC2NBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 233867305 BAM S1_L001_R1 unaligned CPTAC3 b3bffd97-e745-428d-9c86-692ec242a210 141052f6622cfaad53d6861fdf26c4c4 {"aliquot_tag": "ALQ_db1f6681", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05397.miRNA-Seq.S30_L006_R1.A C3L-05397 LSCC miRNA-Seq tissue_normal CPT0289970009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACCGG_S30_L006_R1_001.unaln.bam 215175819 BAM S30_L006_R1 unaligned CPTAC3 84d9c207-1aff-4a0c-9cda-8b61ae10c019 bfae984677c3cc89e9e523f8e9619906 {"aliquot_tag": "ALQ_9cbf1c51", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.miRNA-Seq.T.hg38 C3L-05397 LSCC miRNA-Seq tumor CPT0289940009 cd9281fd-a48e-4338-a0d1-2c1535d94336_mirnaseq_gdc_realn.bam 266074621 BAM harmonized CPTAC3 c8c8bad5-7f93-4e19-90b1-9e9c5f19b8d7 2a3d02393a0509af19333e32e5c02959 {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor"} -C3L-05397.RNA-Seq.chimeric.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.chimeric.gdc_realn.bam 36018240 BAM chimeric harmonized CPTAC3 31ca5539-9ccb-4baa-9bc7-dd6ab12ced25 a0aeded708540a30b82a15c234982d98 {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.RNA-Seq.chimeric.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.chimeric.gdc_realn.bam 85016384 BAM chimeric harmonized CPTAC3 c00a03d0-07ad-4baf-a7a1-84ff5ddad195 02136973892e658a3437c90c176df47c {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor"} -C3L-05397.RNA-Seq.genomic.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.genomic.gdc_realn.bam 9588176218 BAM genomic harmonized CPTAC3 1515d1e0-8907-4eac-90fc-c8a0ffddfabe af528be7a1936e95b87fb237449d207c {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.RNA-Seq.genomic.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.genomic.gdc_realn.bam 7755040002 BAM genomic harmonized CPTAC3 3a61442f-7d7e-40c5-bea0-9b849f02186d 6b8d4e9cf2070e148b5066590124c2ce {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor"} -C3L-05397.RNA-Seq.S16_L004_R1.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4417718201 FASTQ S16_L004_R1 unaligned CPTAC3 1b529f0d-edb3-4bf6-8dfe-ca4a677128d0 445d2393e882fdcda66b6660938bfae6 {"aliquot_tag": "ALQ_9cbf1c51", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.RNA-Seq.S16_L004_R2.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 5301940546 FASTQ S16_L004_R2 unaligned CPTAC3 22fa13f7-d267-4e8b-a38f-cf0bfcab2b04 dff1759f45b2a79721ca5abe6070e140 {"aliquot_tag": "ALQ_9cbf1c51", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.RNA-Seq.S9_L003_R1.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R1_001.fastq.gz 4063269281 FASTQ S9_L003_R1 unaligned CPTAC3 bb6600c1-f592-415f-9155-f9960a85e71d c594ef69c71838a0d93d7f7541bc2be0 {"aliquot_tag": "ALQ_db1f6681", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05397.RNA-Seq.S9_L003_R2.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R2_001.fastq.gz 4215380053 FASTQ S9_L003_R2 unaligned CPTAC3 c0b8ab1b-0380-4814-98bb-1f51e2cfefec f8fc95585f169192d886be7e58d158ec {"aliquot_tag": "ALQ_db1f6681", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05397.RNA-Seq.transcriptome.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.transcriptome.gdc_realn.bam 10803761445 BAM transcriptome harmonized CPTAC3 74777277-5316-4ecd-b257-66b4f1bf0907 bf7540a47077cf365e6644065ca24023 {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.RNA-Seq.transcriptome.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.transcriptome.gdc_realn.bam 12064333549 BAM transcriptome harmonized CPTAC3 8c47cf5f-fa6b-40f2-9208-69ebaa100c77 046f971f7b6bb6b90909577c0a626909 {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor"} -C3L-05397.WGS.N C3L-05397 LSCC WGS blood_normal CPT0290060002 CPT0290060002.WholeGenome.RP-2158.bam 20043165656 BAM aligned CPTAC3 ac8c750b-5805-4927-94cb-9cd7864b7135 cebd6e5bc8654b2d55339f3775950859 {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-05397.WGS.N.hg38 C3L-05397 LSCC WGS blood_normal CPT0290060002 b722d6b5-e10d-4dc5-8cbf-4aacdcfbb671_wgs_gdc_realn.bam 58919124493 BAM harmonized CPTAC3 051ce0e0-be4e-4962-b5e0-6ec0e635ea84 4fd98483194ec3ea8eb44cc28f713ebe {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-05397.WGS.T C3L-05397 LSCC WGS tumor CPT0289940006 CPT0289940006.WholeGenome.RP-2158.bam 28240835053 BAM aligned CPTAC3 0cf704f0-b7c4-46f9-be72-065803dea054 0981ba86a0a23ee4f11ca9f863c4492f {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor"} -C3L-05397.WGS.T.hg38 C3L-05397 LSCC WGS tumor CPT0289940006 4bf7649f-7956-4173-a0b0-ba1eff0a0d4c_wgs_gdc_realn.bam 83225735323 BAM harmonized CPTAC3 286bfa90-9947-4972-9dd2-f0a5fe7734b4 1be19d37bc00d3fee418430aef827cd7 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor"} -C3L-05397.WXS.A C3L-05397 LSCC WXS tissue_normal CPT0289970006 CPT0289970006.WholeExome.RP-1303.bam 19556400616 BAM aligned CPTAC3 1b91f3eb-52d9-4665-9125-c3d336dafeca 7b1a9f9a0082d0db89b96ba92c4edabd {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.WXS.A.hg38 C3L-05397 LSCC WXS tissue_normal CPT0289970006 ca1c6bd9-fbfa-4ff9-a241-ca09ac898bd6_wxs_gdc_realn.bam 27513991800 BAM harmonized CPTAC3 82ac660b-1fab-41c2-82ec-03c97db32b06 013ec3340b963452ad17910c69439990 {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05397.WXS.N C3L-05397 LSCC WXS blood_normal CPT0290060002 CPT0290060002.WholeExome.RP-1303.bam 27642083555 BAM aligned CPTAC3 9a220737-17e2-498c-bd75-5bd068e34e93 f87fea6518d63dfc3e8d0bef74690d82 {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-05397.WXS.N.hg38 C3L-05397 LSCC WXS blood_normal CPT0290060002 b722d6b5-e10d-4dc5-8cbf-4aacdcfbb671_wxs_gdc_realn.bam 38012340972 BAM harmonized CPTAC3 de3d819d-a3b3-4532-bfe4-6a0ead74c54b 768b2474339ebc01a821a4beeee3902c {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal"} -C3L-05397.WXS.T C3L-05397 LSCC WXS tumor CPT0289940006 CPT0289940006.WholeExome.RP-1303.bam 29432979706 BAM aligned CPTAC3 4406282a-186e-4eee-a331-f7832bae201c 8b1ee5033c630bce61bbc167dbf562c3 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor"} -C3L-05397.WXS.T.hg38 C3L-05397 LSCC WXS tumor CPT0289940006 4bf7649f-7956-4173-a0b0-ba1eff0a0d4c_wxs_gdc_realn.bam 40412052226 BAM harmonized CPTAC3 7d42944c-4fff-45d5-9504-1bc295144084 a9b2910a8a9258dab5df853803aa1793 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor"} -C3L-05398.MethArray.Green.A C3L-05398 LSCC Methylation_Array tissue_normal CPT0289780006 204367490066_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 034f4304-fec6-41f6-b60f-bf95dad7d897 55985aedfcdd2e3b512f62118e15e029 {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.MethArray.Green.T C3L-05398 LSCC Methylation_Array tumor CPT0289770006 204367490030_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c5ceeba2-7a7c-481a-aaea-8216263f55de bc86f66de2d89feee873ea9514bd6748 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor"} -C3L-05398.MethArray.Red.A C3L-05398 LSCC Methylation_Array tissue_normal CPT0289780006 204367490066_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 87157b6d-b6bb-46d8-bb94-f13b38a0213d adb38cd15ef721eb1045e867ffadc7fe {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.MethArray.Red.T C3L-05398 LSCC Methylation_Array tumor CPT0289770006 204367490030_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 12409130-5ff9-49a5-bf97-81e9a1018425 04462a33d38f290c23411b9e9a723894 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor"} -C3L-05398.miRNA-Seq.A.hg38 C3L-05398 LSCC miRNA-Seq tissue_normal CPT0289780009 c6ef0b24-64c9-4615-81e8-a721c058b08f_mirnaseq_gdc_realn.bam 282678508 BAM harmonized CPTAC3 08c31a82-d751-4ed7-aea7-0f2b152d4f54 5cd5aa956a18ae54c037cf2468dd2bc3 {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.miRNA-Seq.S24_L006_R1.T C3L-05398 LSCC miRNA-Seq tumor CPT0289770009 200224_UNC31-K00269_0267_AHC722BBXY_GGTAGC_S24_L006_R1_001.unaln.bam 209853782 BAM S24_L006_R1 unaligned CPTAC3 faf6655c-3b07-4a33-bb38-e2b65612e852 b5706589cc0e49275169b4189fc5c239 {"aliquot_tag": "ALQ_a6b57d21", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05398.miRNA-Seq.S29_L006_R1.A C3L-05398 LSCC miRNA-Seq tissue_normal CPT0289780009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAACTA_S29_L006_R1_001.unaln.bam 254959213 BAM S29_L006_R1 unaligned CPTAC3 19714bee-4277-4547-8b8e-352e7f57afe9 19e04a2ecc0e41ee7e55884663de1b97 {"aliquot_tag": "ALQ_24e5eaf0", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.miRNA-Seq.T.hg38 C3L-05398 LSCC miRNA-Seq tumor CPT0289770009 0f86b032-ad3c-4b3d-8a3e-24543c9c18dc_mirnaseq_gdc_realn.bam 231977990 BAM harmonized CPTAC3 cb1cab26-0c9c-4080-8ad6-a410e0f4b1f5 dede333cd823d4d14b88a0e0141b5022 {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor"} -C3L-05398.RNA-Seq.chimeric.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.chimeric.gdc_realn.bam 35977335 BAM chimeric harmonized CPTAC3 62cb30a4-1abc-4b20-a379-31bdea0ad946 25776e551b941e93f915cc8d912a1925 {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.RNA-Seq.chimeric.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.chimeric.gdc_realn.bam 98634446 BAM chimeric harmonized CPTAC3 94be9d2e-2d21-46c4-8c63-3b7388c34d91 a9580304f5e58fc982818a2b767dac71 {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor"} -C3L-05398.RNA-Seq.genomic.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.genomic.gdc_realn.bam 9460138664 BAM genomic harmonized CPTAC3 582c3e71-57eb-47f2-bd0c-9a4933a8edc9 abdc709052b09ba9a6f9ecca385f4b6c {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.RNA-Seq.genomic.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.genomic.gdc_realn.bam 8943998485 BAM genomic harmonized CPTAC3 a974c42f-d140-4c51-93a0-56f85332dc8a 00d3262fe7f8b21c935d49198c1a5dcf {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor"} -C3L-05398.RNA-Seq.S14_L004_R1.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 4347614522 FASTQ S14_L004_R1 unaligned CPTAC3 559e0a4d-43e7-4356-8844-a67519deb855 b8a24e8d813eaa182abd4af8acfadc95 {"aliquot_tag": "ALQ_24e5eaf0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.RNA-Seq.S14_L004_R2.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 5305242192 FASTQ S14_L004_R2 unaligned CPTAC3 518ff125-0abf-4891-9441-934761829e97 6c0511574fbf79f558bf7eaa39784d9f {"aliquot_tag": "ALQ_24e5eaf0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.RNA-Seq.S8_L002_R1.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R1_001.fastq.gz 4516879160 FASTQ S8_L002_R1 unaligned CPTAC3 a764f9f2-fbb8-412e-a9d6-ddbe753b6c34 4b4d895e771c3ac3a51928696b48ce56 {"aliquot_tag": "ALQ_a6b57d21", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05398.RNA-Seq.S8_L002_R2.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R2_001.fastq.gz 4841907943 FASTQ S8_L002_R2 unaligned CPTAC3 efe1ce9f-52c4-4fe9-973a-4f8fdee733cd 61dbb12da6d389d6e65f0e56f3cdb8d9 {"aliquot_tag": "ALQ_a6b57d21", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05398.RNA-Seq.transcriptome.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.transcriptome.gdc_realn.bam 11538109716 BAM transcriptome harmonized CPTAC3 d86399bc-5a27-4ddf-9db3-ffed7318fa42 ec6e2c876755fe1794d0496a3f53fb57 {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.RNA-Seq.transcriptome.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.transcriptome.gdc_realn.bam 12390633136 BAM transcriptome harmonized CPTAC3 d75094ae-79fa-4198-933b-10b838b8fff7 f6c015047a0137378eeb414297eb8bc8 {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor"} -C3L-05398.WGS.N C3L-05398 LSCC WGS blood_normal CPT0289890002 CPT0289890002.WholeGenome.RP-2158.bam 22166431043 BAM aligned CPTAC3 afe82521-b42a-4564-a57d-60a3c973d526 9593638f0233431b9771c57d37191951 {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal"} -C3L-05398.WGS.N.hg38 C3L-05398 LSCC WGS blood_normal CPT0289890002 b2d4cbfa-fc45-4f6c-b41d-675846d7c828_wgs_gdc_realn.bam 65940184957 BAM harmonized CPTAC3 f3085b9f-ee54-42e0-8e81-374a8cdbee7a c77414e792da1050339d90fe33133356 {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal"} -C3L-05398.WGS.T C3L-05398 LSCC WGS tumor CPT0289770006 CPT0289770006.WholeGenome.RP-2158.bam 35078359327 BAM aligned CPTAC3 29e6c3e4-832f-420f-a93e-2333cf07d63c 6aabbe7a31cd3472494df69113a1e91d {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor"} -C3L-05398.WGS.T C3L-05398 LSCC WGS tumor CPT0289770006 CPT0289770006.WholeGenome.RP-2158.bam 35133235492 BAM aligned CPTAC3 7b405845-2218-4029-9702-3363067a5c59 5f8f2b693f3e64169d97ba6ad64bca4c {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor"} -C3L-05398.WGS.T.hg38 C3L-05398 LSCC WGS tumor CPT0289770006 fc6dcae6-aad0-4bef-a15f-59401c7f1c04_wgs_gdc_realn.bam 103871178142 BAM harmonized CPTAC3 34bb8109-aeb8-45f9-8f6a-c9e0236979ef 9a2b72cf71e4a8357a36445fcad01eb7 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor"} -C3L-05398.WXS.A C3L-05398 LSCC WXS tissue_normal CPT0289780006 CPT0289780006.WholeExome.RP-1303.bam 19832566311 BAM aligned CPTAC3 97d462dc-0034-4e26-8ad3-7d148acb4048 5099014ad6554ddcfad3be8891d80821 {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.WXS.A.hg38 C3L-05398 LSCC WXS tissue_normal CPT0289780006 3ee8bb0c-1283-42d4-b901-4896525c6866_wxs_gdc_realn.bam 27280056746 BAM harmonized CPTAC3 ccbd03ce-910a-472b-a773-3f0ad6b079d0 422f7d0f1dec4cf121eabae1f21f6dab {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05398.WXS.N C3L-05398 LSCC WXS blood_normal CPT0289890002 CPT0289890002.WholeExome.RP-1303.bam 26609995148 BAM aligned CPTAC3 fde6427b-f93a-4a94-b932-347006a616b4 a7f4c71aa518589984fb5eeb9595f609 {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal"} -C3L-05398.WXS.N.hg38 C3L-05398 LSCC WXS blood_normal CPT0289890002 b2d4cbfa-fc45-4f6c-b41d-675846d7c828_wxs_gdc_realn.bam 35872575140 BAM harmonized CPTAC3 4e1f597e-f0e9-49bf-bdda-48b221ce70fa 25107d86b0d1209791480b294fffb78f {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal"} -C3L-05398.WXS.T C3L-05398 LSCC WXS tumor CPT0289770006 CPT0289770006.WholeExome.RP-1303.bam 20118186750 BAM aligned CPTAC3 89fb2f0f-e9dd-48ec-a336-017227996c93 5d39dabc7f73bfaddbfc51b2b2b5d606 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor"} -C3L-05398.WXS.T.hg38 C3L-05398 LSCC WXS tumor CPT0289770006 fc6dcae6-aad0-4bef-a15f-59401c7f1c04_wxs_gdc_realn.bam 28536039965 BAM harmonized CPTAC3 ab5cfb81-b05e-499f-a1a1-389f7c9d6db5 75f60503d304a90199d23ca5b2b29d39 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor"} -C3L-05399.MethArray.Green.A C3L-05399 LSCC Methylation_Array tissue_normal CPT0292210006 204367490084_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 527facd7-d391-4380-a451-5009cd459898 23a78d8dc8a88fe6f3c73c2b434786d3 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.MethArray.Green.T C3L-05399 LSCC Methylation_Array tumor CPT0292150009 204367490090_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 fb60a1af-0710-4ee6-9101-e75f118cc989 30f005b37eb21075f964438f845af8be {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor"} -C3L-05399.MethArray.Red.A C3L-05399 LSCC Methylation_Array tissue_normal CPT0292210006 204367490084_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 ece08d1d-a570-48bb-ab95-aaeed5e8399a 5d968694f7833f640aa35c526e573f29 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.MethArray.Red.T C3L-05399 LSCC Methylation_Array tumor CPT0292150009 204367490090_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 575a9a8d-2dea-43f3-b33c-26ed7a783769 062bdf52e7f94cacc52eb0c5a3fce98b {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor"} -C3L-05399.miRNA-Seq.A.hg38 C3L-05399 LSCC miRNA-Seq tissue_normal CPT0292210009 08cb4000-0b8f-4c9a-bfa2-a9b748fb296b_mirnaseq_gdc_realn.bam 275549651 BAM harmonized CPTAC3 04fc4299-3fc6-4fa7-b490-579e42ec465e d31c3a2c87cb351cb6e0b1635afaf502 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.miRNA-Seq.S35_L006_R1.A C3L-05399 LSCC miRNA-Seq tissue_normal CPT0292210009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATTTT_S35_L006_R1_001.unaln.bam 246593540 BAM S35_L006_R1 unaligned CPTAC3 7a25d892-dd46-42fe-87ae-3c0d8f6de190 7bbf7317ec2baec9b4137a61313fd11a {"aliquot_tag": "ALQ_b7954d56", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.miRNA-Seq.S6_L006_R1.T C3L-05399 LSCC miRNA-Seq tumor CPT0292150006 200224_UNC31-K00269_0267_AHC722BBXY_GCCAAT_S6_L006_R1_001.unaln.bam 256427944 BAM S6_L006_R1 unaligned CPTAC3 df259b80-70fc-4d88-8e11-f673b9183e99 cafcdb2a4b3746bcc3530ff2ecfdcfdc {"aliquot_tag": "ALQ_543e84a9", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05399.miRNA-Seq.T.hg38 C3L-05399 LSCC miRNA-Seq tumor CPT0292150006 5c939937-4bfa-4ada-bc15-0ea949ba843f_mirnaseq_gdc_realn.bam 285826870 BAM harmonized CPTAC3 17e8cfd0-2f7a-4254-8f25-272d63502c3a bfa6c0ad19cbf65b357dbd9b8c89e062 {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor"} -C3L-05399.RNA-Seq.chimeric.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.chimeric.gdc_realn.bam 34690553 BAM chimeric harmonized CPTAC3 8a408785-bd51-46bd-863a-208e121217a7 cfb9826fc86a78c67d199de9c849db49 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.RNA-Seq.chimeric.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.chimeric.gdc_realn.bam 88596085 BAM chimeric harmonized CPTAC3 b66bfb1c-503e-473d-be07-0579754987d7 0c43af9eaff91f8767b64ac8b94e4485 {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor"} -C3L-05399.RNA-Seq.genomic.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.genomic.gdc_realn.bam 9382949745 BAM genomic harmonized CPTAC3 c3f148a8-e7df-46e6-a37a-66bc1b1d753c 5b101f8aed88f8a22b1cfaaaf03e4515 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.RNA-Seq.genomic.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.genomic.gdc_realn.bam 7505844880 BAM genomic harmonized CPTAC3 84a0f3b7-4baa-4836-b2ed-dd6cc4d82d81 fd1ea7873e80481f175887cf12aa071c {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor"} -C3L-05399.RNA-Seq.S17_L005_R1.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R1_001.fastq.gz 4375558197 FASTQ S17_L005_R1 unaligned CPTAC3 54b80256-8772-4b8d-9a7f-ebe7fd0df3f9 b41e20884df30ff3d9379e19023aed26 {"aliquot_tag": "ALQ_b7954d56", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.RNA-Seq.S17_L005_R2.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R2_001.fastq.gz 5243812287 FASTQ S17_L005_R2 unaligned CPTAC3 8d4dbbef-5e02-4842-aeec-e5c0ab187b00 0734dfd836ed6fc484c675a6b76d6336 {"aliquot_tag": "ALQ_b7954d56", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.RNA-Seq.S22_L006_R1.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R1_001.fastq.gz 3771340480 FASTQ S22_L006_R1 unaligned CPTAC3 3cc607b5-5a8e-4109-ac61-0059723dbfa6 722bc509d4a5918124de4778b06d0849 {"aliquot_tag": "ALQ_543e84a9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05399.RNA-Seq.S22_L006_R2.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R2_001.fastq.gz 3965071810 FASTQ S22_L006_R2 unaligned CPTAC3 896aac7d-de87-4317-ab43-c555fae45f42 d408ea1fa04b5885c6d41c20390f1145 {"aliquot_tag": "ALQ_543e84a9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05399.RNA-Seq.transcriptome.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.transcriptome.gdc_realn.bam 10926535761 BAM transcriptome harmonized CPTAC3 e4762b53-ec07-4264-8942-67fdd2308d80 a309c757669119086beeb48fcbd6a920 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.RNA-Seq.transcriptome.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.transcriptome.gdc_realn.bam 9776364121 BAM transcriptome harmonized CPTAC3 ee082981-2a07-424c-ad81-ad000a5c9164 24b55788f7db9b6173f4f2c6bfb71d1a {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor"} -C3L-05399.WGS.N C3L-05399 LSCC WGS blood_normal CPT0292300002 CPT0292300002.WholeGenome.RP-2158.bam 29098002847 BAM aligned CPTAC3 f4cf7ae7-71fe-47b2-b355-32ec611bab04 ed1ecc10769cb4801cc5558776f91a30 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05399.WGS.N.hg38 C3L-05399 LSCC WGS blood_normal CPT0292300002 b7a0ca13-78c2-4771-a5ed-4cf45eeb5b64_wgs_gdc_realn.bam 84751565821 BAM harmonized CPTAC3 dd68a938-11e8-40d0-b712-e83bde34b0bf 33f33a1a541438b04e7ab25047670b21 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05399.WGS.T C3L-05399 LSCC WGS tumor CPT0292150009 CPT0292150009.WholeGenome.RP-2158.bam 28893837928 BAM aligned CPTAC3 b0cab097-d50e-4eca-a5a4-f794bca0288c 254307958ba942f644c3936031a1b491 {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor"} -C3L-05399.WGS.T.hg38 C3L-05399 LSCC WGS tumor CPT0292150009 c2f89f93-a3b2-468e-b80c-a997cbb57d30_wgs_gdc_realn.bam 85471524467 BAM harmonized CPTAC3 85ba706e-0a65-4b72-ac67-50864ea65870 648e271d936b5231e89790631698214f {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor"} -C3L-05399.WXS.A C3L-05399 LSCC WXS tissue_normal CPT0292210006 CPT0292210006.WholeExome.RP-1303.bam 19598352377 BAM aligned CPTAC3 51d7a3c5-c897-4ca8-a5a8-ac1df00d4b91 69619567c09049d88f332218441c1cb9 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.WXS.A.hg38 C3L-05399 LSCC WXS tissue_normal CPT0292210006 b81f0f9a-c4eb-4700-ba25-c3473a602d8e_wxs_gdc_realn.bam 27341127996 BAM harmonized CPTAC3 4e7b5dc0-49f1-4814-b6f9-bc9a8374c325 cc957e78e97ec047de10f2f6523a2e51 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05399.WXS.N C3L-05399 LSCC WXS blood_normal CPT0292300002 CPT0292300002.WholeExome.RP-1303.bam 52531235106 BAM aligned CPTAC3 b9e1541b-420f-4c8f-9aa4-3ea9732607e6 17d66f0fd9908be6e30ec1a305e4e580 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05399.WXS.N.hg38 C3L-05399 LSCC WXS blood_normal CPT0292300002 b7a0ca13-78c2-4771-a5ed-4cf45eeb5b64_wxs_gdc_realn.bam 72191038773 BAM harmonized CPTAC3 5531531a-1ec7-454d-8c99-6874c502ba9a 098358a258e1f2ab24d57118e6b45942 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05399.WXS.T C3L-05399 LSCC WXS tumor CPT0292150009 CPT0292150009.WholeExome.RP-1303.bam 18100035542 BAM aligned CPTAC3 bb80f316-fe41-47d5-8159-d3d79be1dd81 c9b8061c210080d2a83451dd5e665d65 {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor"} -C3L-05399.WXS.T.hg38 C3L-05399 LSCC WXS tumor CPT0292150009 c2f89f93-a3b2-468e-b80c-a997cbb57d30_wxs_gdc_realn.bam 25091863019 BAM harmonized CPTAC3 062181be-9e9d-4861-88e8-febfa0b011d6 e0119eb871cb840299dd7e30e3f1b10c {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor"} -C3L-05411.MethArray.Green.A C3L-05411 LSCC Methylation_Array tissue_normal CPT0294290006 204372030023_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 bbc7541e-0daf-4ef3-ae41-edc6460fdf2c 15457df52b4c434e9ebffcf4536620b6 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.MethArray.Green.T C3L-05411 LSCC Methylation_Array tumor CPT0293160006 204372030013_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 cc0a69f1-0af1-44d7-b3b6-7528492ce610 776ae4c72cdd9b41dbb6181e0dd9b116 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor"} -C3L-05411.MethArray.Red.A C3L-05411 LSCC Methylation_Array tissue_normal CPT0294290006 204372030023_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 ecf872d8-23bc-4668-b25e-2f79ad61d7ab 23b9ecf52343ef80e203852b9ca0e438 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.MethArray.Red.T C3L-05411 LSCC Methylation_Array tumor CPT0293160006 204372030013_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 d94fc078-d252-40b8-adf7-fb945d638907 a991d2b6a5231baef6b03b18cb6981b4 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor"} -C3L-05411.miRNA-Seq.A.hg38 C3L-05411 LSCC miRNA-Seq tissue_normal CPT0294290009 33b214a7-e157-4d31-abde-627c50d76713_mirnaseq_gdc_realn.bam 301914047 BAM harmonized CPTAC3 464567ec-27db-4e9f-8d01-325863113294 57b6650edfd32930295ad314b1dd73c7 {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.miRNA-Seq.S17_L001_R1.T C3L-05411 LSCC miRNA-Seq tumor CPT0293160009 200325_UNC31-K00269_0272_AHHC2NBBXY_GACGAC_S17_L001_R1_001.unaln.bam 227657933 BAM S17_L001_R1 unaligned CPTAC3 049338ba-5110-4839-9bf8-bbc9cb0edece 28398fe2352469cc2f060e8f2aa24f53 {"aliquot_tag": "ALQ_2556e85c", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05411.miRNA-Seq.S36_L006_R1.A C3L-05411 LSCC miRNA-Seq tissue_normal CPT0294290009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCAACA_S36_L006_R1_001.unaln.bam 269057680 BAM S36_L006_R1 unaligned CPTAC3 1d7385ea-e700-48fb-a323-e260e0db87a5 239d1bec258b98e9ae1eea94572a3009 {"aliquot_tag": "ALQ_e43533ad", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.miRNA-Seq.T.hg38 C3L-05411 LSCC miRNA-Seq tumor CPT0293160009 8c83d60f-98d3-4be1-93b2-63c47802e40a_mirnaseq_gdc_realn.bam 245528846 BAM harmonized CPTAC3 22636ca5-07f5-46fe-a9f8-fde9791def46 a8aa1151571a6c748c2c70e35b6736db {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor"} -C3L-05411.RNA-Seq.chimeric.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.chimeric.gdc_realn.bam 28112789 BAM chimeric harmonized CPTAC3 fc05db91-2981-4261-a82b-dcdae17d04f8 5696b0a9f47ed992411bc6eee3090eed {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.RNA-Seq.chimeric.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.chimeric.gdc_realn.bam 62205983 BAM chimeric harmonized CPTAC3 f909364e-cd84-49c9-b3f7-759431bb50ee 2f55531ec573d12543898728f2cf2fdf {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor"} -C3L-05411.RNA-Seq.genomic.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.genomic.gdc_realn.bam 7532366014 BAM genomic harmonized CPTAC3 e00e07a7-6eeb-4d6f-a000-114d5cca6a42 e9c5eb43a11602c46efbfa6601af68bf {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.RNA-Seq.genomic.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.genomic.gdc_realn.bam 8305161119 BAM genomic harmonized CPTAC3 a3ef45b7-93da-4e12-8273-7e0922b1a0ea a96eb5b5ec346debcd0d09c7965ca9fb {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor"} -C3L-05411.RNA-Seq.S19_L005_R1.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R1_001.fastq.gz 3405054575 FASTQ S19_L005_R1 unaligned CPTAC3 3342b740-1f04-480f-ae1d-17341e98ca9c e36ab2e1455c26a56d7941f4b6bc7230 {"aliquot_tag": "ALQ_e43533ad", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.RNA-Seq.S19_L005_R2.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R2_001.fastq.gz 4128482183 FASTQ S19_L005_R2 unaligned CPTAC3 14c35597-59b5-44df-8544-f586ecdd6ec1 bfab8a1bd0869c59b0efcc61d514f9ca {"aliquot_tag": "ALQ_e43533ad", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.RNA-Seq.S25_L007_R1.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R1_001.fastq.gz 4245426142 FASTQ S25_L007_R1 unaligned CPTAC3 07570cfe-95d4-4547-8a49-cd0f32374d58 0136716eb226361f36c4e77326e86b72 {"aliquot_tag": "ALQ_2556e85c", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05411.RNA-Seq.S25_L007_R2.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R2_001.fastq.gz 4377701426 FASTQ S25_L007_R2 unaligned CPTAC3 78f30461-f5e1-4177-a3c4-4b4b1c55ad62 efdbb535018865096ae737c0a74c31a0 {"aliquot_tag": "ALQ_2556e85c", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05411.RNA-Seq.transcriptome.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.transcriptome.gdc_realn.bam 8746875187 BAM transcriptome harmonized CPTAC3 39efbcfe-b0ba-47b6-86af-97961f3f636b 969deebc02cdb11104840c0296935928 {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.RNA-Seq.transcriptome.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.transcriptome.gdc_realn.bam 11650183014 BAM transcriptome harmonized CPTAC3 671837da-56cf-452b-b9af-1ab6e79a07fc c62c910713efcb0e0001770755f03e35 {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor"} -C3L-05411.WGS.N C3L-05411 LSCC WGS blood_normal CPT0294390002 CPT0294390002.WholeGenome.RP-2158.bam 20306842382 BAM aligned CPTAC3 2fb8bd38-6383-4b84-a2fa-a50a00d2f3b7 eb6f4c8d561d3f0878e591d0462c8a79 {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal"} -C3L-05411.WGS.N.hg38 C3L-05411 LSCC WGS blood_normal CPT0294390002 1cf403f3-2850-4007-b4c2-996b29398e5f_wgs_gdc_realn.bam 59429608256 BAM harmonized CPTAC3 02318ce0-ed93-4b52-8861-f1bad1b7927f 827896e74e77e3166f6bbb6731f35a3a {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal"} -C3L-05411.WGS.T C3L-05411 LSCC WGS tumor CPT0293160006 CPT0293160006.WholeGenome.RP-2158.bam 22658753532 BAM aligned CPTAC3 f056e279-87b9-4570-b509-a22a26f90d15 23c801c10b4af93220eefa8d91e7b7cc {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor"} -C3L-05411.WGS.T.hg38 C3L-05411 LSCC WGS tumor CPT0293160006 bbc687be-ab91-452e-a017-229e2202463f_wgs_gdc_realn.bam 68111853652 BAM harmonized CPTAC3 93a1dc32-4c45-44e1-bf2b-5680b7a955b9 eb19765f08cf7ceeaae71d13b1247a45 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor"} -C3L-05411.WXS.A C3L-05411 LSCC WXS tissue_normal CPT0294290006 CPT0294290006.WholeExome.RP-1303.bam 23111264672 BAM aligned CPTAC3 f4f098f3-22bc-4c5a-8019-87eefba52bc4 ed7cd4fba60717e09c766c39eb84f869 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.WXS.A.hg38 C3L-05411 LSCC WXS tissue_normal CPT0294290006 4109df44-16a0-40be-96ab-1c0d1048d8b3_wxs_gdc_realn.bam 32122979395 BAM harmonized CPTAC3 2426dcfe-e6dc-415a-9249-ee056cdd976d a7015ce086bcea4cc676f87d87f731a0 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05411.WXS.N C3L-05411 LSCC WXS blood_normal CPT0294390002 CPT0294390002.WholeExome.RP-1303.bam 25141306514 BAM aligned CPTAC3 21adfdc3-55f0-4b3e-a75d-421851b9c011 88d93ca5f15485174fbde647286bbe7a {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal"} -C3L-05411.WXS.N.hg38 C3L-05411 LSCC WXS blood_normal CPT0294390002 1cf403f3-2850-4007-b4c2-996b29398e5f_wxs_gdc_realn.bam 34555619212 BAM harmonized CPTAC3 f95e7e57-2ee4-4f76-8a67-bb6954544f1b a6404c08d947f4a69e217d714f10570d {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal"} -C3L-05411.WXS.T C3L-05411 LSCC WXS tumor CPT0293160006 CPT0293160006.WholeExome.RP-1303.bam 28796980033 BAM aligned CPTAC3 69e466fc-0c93-462d-a702-99e5d8c956fa f17373010a3e8e384935d7fc0738cd8a {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor"} -C3L-05411.WXS.T.hg38 C3L-05411 LSCC WXS tumor CPT0293160006 bbc687be-ab91-452e-a017-229e2202463f_wxs_gdc_realn.bam 39262643974 BAM harmonized CPTAC3 ea77567a-73ba-4d64-b496-009c5f70f08e 16f59d5833dfbaa4c929125816944ef6 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor"} -C3L-05417.MethArray.Green.A C3L-05417 LSCC Methylation_Array tissue_normal CPT0328490006 204367490056_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 2199d590-3c0c-4153-ad2b-c20a3ce73632 d6e30bf8e27e511d7bc25aa75388d4ee {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.MethArray.Green.T C3L-05417 LSCC Methylation_Array tumor CPT0328450006 204367490084_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 b98f513e-5bd6-478c-933e-05a2e333233a 3118ed0127b1b9c05623fc3a8b383a6c {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor"} -C3L-05417.MethArray.Red.A C3L-05417 LSCC Methylation_Array tissue_normal CPT0328490006 204367490056_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 1220adfa-be55-48d7-a8f4-34c0342fd52f e2eb2c1c5cbb4b7f12fb2f1ecf339e69 {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.MethArray.Red.T C3L-05417 LSCC Methylation_Array tumor CPT0328450006 204367490084_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 6f9b985f-5626-4030-97e2-171175bda3d3 11ead99ae4d8a717d33eac9ddb8046c8 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor"} -C3L-05417.miRNA-Seq.A.hg38 C3L-05417 LSCC miRNA-Seq tissue_normal CPT0328490009 7b6568f2-d2f8-496b-8965-e50c61dabb8d_mirnaseq_gdc_realn.bam 188351234 BAM harmonized CPTAC3 a91ddb39-b62d-411e-9639-d583ddf2de07 338bd0d0461be34c8c65aa3181a12f7a {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.miRNA-Seq.S26_L006_R1.A C3L-05417 LSCC miRNA-Seq tissue_normal CPT0328490009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATGAGC_S26_L006_R1_001.unaln.bam 172910619 BAM S26_L006_R1 unaligned CPTAC3 93f4b83c-cf41-4fcf-800c-8751b028f5ff e1f9cadcc5df42329123ceaa6b1a7c39 {"aliquot_tag": "ALQ_bfddb2d1", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.miRNA-Seq.S45_L006_R1.T C3L-05417 LSCC miRNA-Seq tumor CPT0328450009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCATTC_S45_L006_R1_001.unaln.bam 186403407 BAM S45_L006_R1 unaligned CPTAC3 6eb0206d-c576-4309-824e-7fc06b94e3b0 0905b3e29560749de4d6e43c1e71ef02 {"aliquot_tag": "ALQ_7a2d5fd0", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05417.miRNA-Seq.T.hg38 C3L-05417 LSCC miRNA-Seq tumor CPT0328450009 f306f1de-ae6e-49b6-ae75-47f89122a04d_mirnaseq_gdc_realn.bam 205717521 BAM harmonized CPTAC3 377a346b-e261-4f32-9c3a-82953eecf03a a2e2f1e9fa6a465bccbf957fa87049b1 {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor"} -C3L-05417.RNA-Seq.chimeric.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.chimeric.gdc_realn.bam 26916285 BAM chimeric harmonized CPTAC3 c81f3c1f-1351-41b0-a17f-a3c6ae097621 19c41ac4d1749edd49280953d80d7f8e {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.RNA-Seq.chimeric.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.chimeric.gdc_realn.bam 32673412 BAM chimeric harmonized CPTAC3 1aac26a4-9710-4321-bc5e-ad04d8897799 ce96383de68964465e37530ec89cfea6 {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor"} -C3L-05417.RNA-Seq.genomic.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.genomic.gdc_realn.bam 7770820426 BAM genomic harmonized CPTAC3 1a4caf90-50c5-492c-8ffa-96a8559681c7 7ecd334f95fc736ac7afedcfa34a1e97 {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.RNA-Seq.genomic.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.genomic.gdc_realn.bam 9184540201 BAM genomic harmonized CPTAC3 388af169-c07b-4593-bb00-96068262f5d8 22c5052c49123b8b70bb8e24e50c01fb {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor"} -C3L-05417.RNA-Seq.S11_L003_R1.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3275553191 FASTQ S11_L003_R1 unaligned CPTAC3 47b8fcfb-4b58-4787-8d6f-f5b583d4de85 81b33c9737b53f749c2f6cfe5a16f9da {"aliquot_tag": "ALQ_bfddb2d1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.RNA-Seq.S11_L003_R2.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4086797292 FASTQ S11_L003_R2 unaligned CPTAC3 987d6444-de01-4a5e-8fd7-b634ed325946 f21ee00a7268548edfc3cdb137377993 {"aliquot_tag": "ALQ_bfddb2d1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.RNA-Seq.S30_L008_R1.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R1_001.fastq.gz 4088607192 FASTQ S30_L008_R1 unaligned CPTAC3 5920b4ba-74d8-4ccb-8183-fc1c4fc07b8d 49599a5fd637b39fe60abd9e481ffd12 {"aliquot_tag": "ALQ_7a2d5fd0", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05417.RNA-Seq.S30_L008_R2.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R2_001.fastq.gz 5175218640 FASTQ S30_L008_R2 unaligned CPTAC3 d727d5e2-2348-44a1-bfd4-6560fe45cf58 afb63e2944b2c5471c71ffe580f59ccc {"aliquot_tag": "ALQ_7a2d5fd0", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05417.RNA-Seq.transcriptome.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.transcriptome.gdc_realn.bam 7712584190 BAM transcriptome harmonized CPTAC3 b00717e0-18e7-4228-9087-8f9f93fe297d bc0b6005c44e53ad62d5ea57b6b67b72 {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.RNA-Seq.transcriptome.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.transcriptome.gdc_realn.bam 12004740375 BAM transcriptome harmonized CPTAC3 e8415e4e-d212-45af-8079-bde38076bc54 a601901b96a8184291398f5d05cc2af6 {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor"} -C3L-05417.WGS.N C3L-05417 LSCC WGS blood_normal CPT0328590002 CPT0328590002.WholeGenome.RP-2158.bam 32329743122 BAM aligned CPTAC3 cd63e13c-c29e-4b71-b869-7c05f20cbb2d 78239c03adca13d8a851c68627ae914a {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05417.WGS.N.hg38 C3L-05417 LSCC WGS blood_normal CPT0328590002 e23f6a2d-a1b0-4d06-8422-e974a789d4c9_wgs_gdc_realn.bam 98268443888 BAM harmonized CPTAC3 de2db24a-2b8b-46a0-80dd-d624854d697b ef2ed42197d185b504f1d971500d3e76 {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05417.WGS.T C3L-05417 LSCC WGS tumor CPT0328450006 CPT0328450006.WholeGenome.RP-2158.bam 25818367007 BAM aligned CPTAC3 98939581-465f-4811-ab8f-6dec3e8982b3 cb2508c1981f68dcf6868bd675c51a85 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor"} -C3L-05417.WGS.T.hg38 C3L-05417 LSCC WGS tumor CPT0328450006 216d2dbb-6bc1-4860-ab70-6fe360188711_wgs_gdc_realn.bam 73162076025 BAM harmonized CPTAC3 ae569a6e-4c00-49af-b9cb-523c4af30ba9 d5b8543ef4d05c3cc099f61541a0dd99 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor"} -C3L-05417.WXS.A C3L-05417 LSCC WXS tissue_normal CPT0328490006 CPT0328490006.WholeExome.RP-1303.bam 21746804577 BAM aligned CPTAC3 3a95f3a5-b4ea-4ca0-88a0-1c61694398dc a437cd7fcbf9866d8f4ffb8c981e6c42 {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.WXS.A.hg38 C3L-05417 LSCC WXS tissue_normal CPT0328490006 1966deaa-e994-44dd-90ee-82caaf359a5b_wxs_gdc_realn.bam 29730773235 BAM harmonized CPTAC3 077508b4-dea4-41d3-89aa-29a0846fe7de 1fe7383700e80cfdc23c5e7eed57c5e7 {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05417.WXS.N C3L-05417 LSCC WXS blood_normal CPT0328590002 CPT0328590002.WholeExome.RP-1303.bam 19303925202 BAM aligned CPTAC3 6060588b-41e7-4dd9-9664-94e289138d58 2449ee6a2484e1400572af0d950329c5 {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05417.WXS.N.hg38 C3L-05417 LSCC WXS blood_normal CPT0328590002 e23f6a2d-a1b0-4d06-8422-e974a789d4c9_wxs_gdc_realn.bam 26758998432 BAM harmonized CPTAC3 94540fa4-9fc3-46e2-8343-966888de928a b5433762761ce91727617e614793ff2c {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal"} -C3L-05417.WXS.T C3L-05417 LSCC WXS tumor CPT0328450006 CPT0328450006.WholeExome.RP-1303.bam 20982682894 BAM aligned CPTAC3 99a34aa7-6a5c-4630-b95a-b4a74b4946c7 138f96e82811672999838c8de251b773 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor"} -C3L-05417.WXS.T.hg38 C3L-05417 LSCC WXS tumor CPT0328450006 216d2dbb-6bc1-4860-ab70-6fe360188711_wxs_gdc_realn.bam 28578077207 BAM harmonized CPTAC3 63bc1386-23fd-4282-8b6b-e0f8c0d2beef 96d02e8aa3798613acd3af07d09caa01 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor"} -C3L-05420.MethArray.Green.A C3L-05420 LSCC Methylation_Array tissue_normal CPT0292020006 204367490048_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 244d6d9d-8e97-4e57-8e74-40c7614c9309 1adf63ab1bf98299f0c531caba1ea997 {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.MethArray.Green.T C3L-05420 LSCC Methylation_Array tumor CPT0291980006 204367490043_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 b98153ae-62ba-4cac-a3c2-6edff0a32c7a 9bbb207be0853369baacd4b9dc63eacb {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor"} -C3L-05420.MethArray.Red.A C3L-05420 LSCC Methylation_Array tissue_normal CPT0292020006 204367490048_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 758edcf0-55f0-4dbf-9e69-d5c5bff78352 bd606855aeba11272855ed9f2f5c8fbe {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.MethArray.Red.T C3L-05420 LSCC Methylation_Array tumor CPT0291980006 204367490043_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 9afc67a0-5cfe-48ec-a756-15586f9f5209 feed436a35ba17a96388c477f1e46771 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor"} -C3L-05420.miRNA-Seq.A.hg38 C3L-05420 LSCC miRNA-Seq tissue_normal CPT0292020009 d5ddd596-21a2-4470-a89b-acf47035a3f0_mirnaseq_gdc_realn.bam 263638212 BAM harmonized CPTAC3 6960c0ad-945a-4677-a37e-c2bd451b77aa 426a7761a723814fae359c1f11451f76 {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.miRNA-Seq.S34_L006_R1.A C3L-05420 LSCC miRNA-Seq tissue_normal CPT0292020009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATGGC_S34_L006_R1_001.unaln.bam 234287785 BAM S34_L006_R1 unaligned CPTAC3 4d27d9ef-e49a-4fef-a2a7-f2d8e9cf37ee 8ad75342afa25acc07d4df4e1b33aa6c {"aliquot_tag": "ALQ_bdfd968d", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.miRNA-Seq.S6_L001_R1.T C3L-05420 LSCC miRNA-Seq tumor CPT0291980009 200325_UNC31-K00269_0272_AHHC2NBBXY_CACCGG_S6_L001_R1_001.unaln.bam 249602173 BAM S6_L001_R1 unaligned CPTAC3 82e6d604-6f17-4851-ad6b-4fe435fe9fb4 bce53c2790882897b3a1565591e649ba {"aliquot_tag": "ALQ_e1aac579", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05420.miRNA-Seq.T.hg38 C3L-05420 LSCC miRNA-Seq tumor CPT0291980009 e1a0938f-0147-487d-8114-7c9c92babfff_mirnaseq_gdc_realn.bam 269847098 BAM harmonized CPTAC3 d63ed244-083f-4167-b763-ad28d8253ba5 063b566daaa8e4ef11105ee13353b055 {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor"} -C3L-05420.RNA-Seq.chimeric.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.chimeric.gdc_realn.bam 34527951 BAM chimeric harmonized CPTAC3 01f241be-9d01-43eb-b04a-2e421b3160ea fadc6622d72735b0be1595aa67ae911c {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.RNA-Seq.chimeric.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.chimeric.gdc_realn.bam 94264941 BAM chimeric harmonized CPTAC3 8db13e22-c6ee-4773-a56f-bc022f861a91 d430b5987a3acd178d25502ea441455a {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor"} -C3L-05420.RNA-Seq.genomic.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.genomic.gdc_realn.bam 8718897441 BAM genomic harmonized CPTAC3 fc526e5e-9cb7-45ce-8a6c-a355a64cce51 a4ff123d3df6c9757bad626b1db48ac7 {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.RNA-Seq.genomic.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.genomic.gdc_realn.bam 7520723183 BAM genomic harmonized CPTAC3 bb1ef32b-4211-4a38-a50c-c0b970a3b751 cf9b6ac2f5660d3e722808c51f88b709 {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor"} -C3L-05420.RNA-Seq.S14_L004_R1.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R1_001.fastq.gz 3695335244 FASTQ S14_L004_R1 unaligned CPTAC3 c00ad80f-877c-4092-8150-37a3277af987 d41bd516abcdd563f98d591aa527fbfc {"aliquot_tag": "ALQ_e1aac579", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05420.RNA-Seq.S14_L004_R2.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R2_001.fastq.gz 3904269143 FASTQ S14_L004_R2 unaligned CPTAC3 c2735bdb-f91e-4e67-a535-fd0210870666 d224af1bd0515d5b821f954153f15fe9 {"aliquot_tag": "ALQ_e1aac579", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05420.RNA-Seq.S18_L005_R1.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R1_001.fastq.gz 3846356115 FASTQ S18_L005_R1 unaligned CPTAC3 0e305113-918e-44db-b305-707f5caf6fe2 739152f4ab0cff5ef45919070ef88499 {"aliquot_tag": "ALQ_bdfd968d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.RNA-Seq.S18_L005_R2.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R2_001.fastq.gz 4873807125 FASTQ S18_L005_R2 unaligned CPTAC3 0cd31933-c48b-4ad4-8fb4-002b4db21496 fe8027dbef56655d3fe79eee466b91e8 {"aliquot_tag": "ALQ_bdfd968d", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.RNA-Seq.transcriptome.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.transcriptome.gdc_realn.bam 9925963783 BAM transcriptome harmonized CPTAC3 924ed0c6-0429-418c-b6c1-4906a67b006d 6fbb88ed5bdbbe02864a3defe2b26bc2 {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.RNA-Seq.transcriptome.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.transcriptome.gdc_realn.bam 10554491384 BAM transcriptome harmonized CPTAC3 cf6d81d9-0858-463a-bd81-5bf55a7ad1bc 08f22054477099c564686b21b721d8d7 {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor"} -C3L-05420.WGS.N C3L-05420 LSCC WGS blood_normal CPT0292120002 CPT0292120002.WholeGenome.RP-2158.bam 29184075501 BAM aligned CPTAC3 eeb6c62f-88d6-46e7-8a7d-7c5627fca1cf 133aef7885e3856c549b9e537cc0a470 {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05420.WGS.N.hg38 C3L-05420 LSCC WGS blood_normal CPT0292120002 1a3a6a41-a4d3-4b76-9184-5cede7fcb0bf_wgs_gdc_realn.bam 86668734517 BAM harmonized CPTAC3 eb81c000-0d62-401f-83f3-6bebe143f74f 542cf7f9c563507659f03e4ac5202f7b {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05420.WGS.T C3L-05420 LSCC WGS tumor CPT0291980006 CPT0291980006.WholeGenome.RP-2158.bam 23944172250 BAM aligned CPTAC3 cf84cdb6-12cf-4d2c-8cc5-7cf576db0d9f 6edee1b626c463cfd9d8806db8d75eb5 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor"} -C3L-05420.WGS.T.hg38 C3L-05420 LSCC WGS tumor CPT0291980006 7d038235-f19b-4a5c-9fff-f7fd27f8acbb_wgs_gdc_realn.bam 71263591027 BAM harmonized CPTAC3 c3dfec9d-0f22-434f-82ce-08a0a919146f 8fabd3211163c3ff9646b55cfddce775 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor"} -C3L-05420.WXS.A C3L-05420 LSCC WXS tissue_normal CPT0292020006 CPT0292020006.WholeExome.RP-1303.bam 20508112154 BAM aligned CPTAC3 5c189c9d-d16f-47e2-a395-8770b69822d2 57ae4d5e6f7e230d9c09af1e4d1efe80 {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.WXS.A.hg38 C3L-05420 LSCC WXS tissue_normal CPT0292020006 fd6eb8b1-f5e8-4dc6-af73-e79d5d4bb074_wxs_gdc_realn.bam 27949826990 BAM harmonized CPTAC3 ab2c17f3-8128-46a0-9675-83dd94561a1f 5128eaf6c4c8241aeac23fc6f9fbf69b {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05420.WXS.N C3L-05420 LSCC WXS blood_normal CPT0292120002 CPT0292120002.WholeExome.RP-1303.bam 27636108898 BAM aligned CPTAC3 7c309a74-07f2-4d54-88d1-04b716acede6 5eb0daf18ea9d94210b3d492f380aaa5 {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05420.WXS.N.hg38 C3L-05420 LSCC WXS blood_normal CPT0292120002 1a3a6a41-a4d3-4b76-9184-5cede7fcb0bf_wxs_gdc_realn.bam 36238604335 BAM harmonized CPTAC3 bde5c3f4-cf28-4f06-8983-c57e05d96b6d 4403ceb01feb0d92142a918e9b38edb5 {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal"} -C3L-05420.WXS.T C3L-05420 LSCC WXS tumor CPT0291980006 CPT0291980006.WholeExome.RP-1303.bam 30760178958 BAM aligned CPTAC3 3519efb0-cd3d-42b9-b39d-3875684a6249 cff104abbe30c530658259f02d1d05cb {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor"} -C3L-05420.WXS.T.hg38 C3L-05420 LSCC WXS tumor CPT0291980006 7d038235-f19b-4a5c-9fff-f7fd27f8acbb_wxs_gdc_realn.bam 42321548829 BAM harmonized CPTAC3 acbc39de-062d-4a87-8fed-98e5187da14c 010ad42186e6bb115e40836c3b816b30 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor"} -C3L-05422.MethArray.Green.A C3L-05422 LSCC Methylation_Array tissue_normal CPT0282760006 204367470157_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1ee5f40a-14a6-4600-82b9-176161c3f0c9 f68bf10a9b7360ae5366d392b4e27997 {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.MethArray.Green.T C3L-05422 LSCC Methylation_Array tumor CPT0282750006 204372030011_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a2f78a3b-17b8-40e3-9044-9b824d7dcd63 720b54d84f5817587949b1d7a638a1e6 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor"} -C3L-05422.MethArray.Red.A C3L-05422 LSCC Methylation_Array tissue_normal CPT0282760006 204367470157_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 25cbad9a-9e39-4e5e-bf09-af24960de3db 885296fda016299165928bfd6aa21ae2 {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.MethArray.Red.T C3L-05422 LSCC Methylation_Array tumor CPT0282750006 204372030011_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 026ab295-640b-4eb1-9fcd-7193054b73f2 24f9870300bbb47e0b3fde10497f37fd {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor"} -C3L-05422.miRNA-Seq.A.hg38 C3L-05422 LSCC miRNA-Seq tissue_normal CPT0282760009 ae215573-c2ad-4153-adf7-6b715401eb1d_mirnaseq_gdc_realn.bam 265323216 BAM harmonized CPTAC3 e1a490f6-a07e-4905-9aec-011940f3d1b8 8aa6442fa832a73adf32e2a0b7e41f96 {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.miRNA-Seq.S14_L001_R1.T C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L001_R1_001.unaln.bam 138996698 BAM S14_L001_R1 unaligned CPTAC3 577aecd2-8b8d-471a-b9be-7f6f1045506a 1db07931a12aff824ff922f073970332 {"aliquot_tag": "ALQ_de727abb", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05422.miRNA-Seq.S18_L006_R1.T C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 200224_UNC31-K00269_0267_AHC722BBXY_GTCCGC_S18_L006_R1_001.unaln.bam 146024716 BAM S18_L006_R1 unaligned CPTAC3 7db14e54-f5e1-44a9-8c6c-2fa854e77f6c 8777248151df24581a40d8cd16ceeeea {"aliquot_tag": "ALQ_de727abb", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05422.miRNA-Seq.S22_L005_R1.A C3L-05422 LSCC miRNA-Seq tissue_normal CPT0282760009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAGCTT_S22_L005_R1_001.unaln.bam 241429224 BAM S22_L005_R1 unaligned CPTAC3 66f62135-ee2e-430c-beea-05ab9c3fd9ea 4d311577c0bc71b0fd980220ea2b70a4 {"aliquot_tag": "ALQ_99d2006b", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.miRNA-Seq.T.hg38 C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 2e55dd0b-0d75-4982-bec5-9fea5940f075_mirnaseq_gdc_realn.bam 309080854 BAM harmonized CPTAC3 b74b1301-fb88-4903-8751-736481f9af02 b109c826ad9da2266f5b16b76fc418ab {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor"} -C3L-05422.RNA-Seq.chimeric.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.chimeric.gdc_realn.bam 34345752 BAM chimeric harmonized CPTAC3 b7966d03-ff56-4638-a34f-9cffcda2d9ee 28d6b2490d67ed984d7772e9ea95d79f {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.RNA-Seq.chimeric.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.chimeric.gdc_realn.bam 91501094 BAM chimeric harmonized CPTAC3 638dfcb0-9e5a-4300-9af7-4c3b607aaf8b 08550dec0e9677fcb2a6c890b8a8e2dc {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor"} -C3L-05422.RNA-Seq.genomic.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.genomic.gdc_realn.bam 8243733724 BAM genomic harmonized CPTAC3 3118106e-33bc-45ad-8e8c-1d5f5260b645 56e1eb067d9ed608a63d71f91f890dd3 {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.RNA-Seq.genomic.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.genomic.gdc_realn.bam 7533288510 BAM genomic harmonized CPTAC3 1a5af40f-8ae5-42e5-8eae-85bcff8dffda 38a4383553dd7553f13a45ec06b6e9c1 {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor"} -C3L-05422.RNA-Seq.S10_L007_R1.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R1_001.fastq.gz 4180932305 FASTQ S10_L007_R1 unaligned CPTAC3 edf97ae2-81b1-4e6f-9cde-b240d6c53e2d a5adfbcd9c8b724ad9faf8a8720cbeff {"aliquot_tag": "ALQ_99d2006b", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.RNA-Seq.S10_L007_R2.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R2_001.fastq.gz 4412938656 FASTQ S10_L007_R2 unaligned CPTAC3 d9ee245f-9d2e-4b9b-a400-6b63d59023e2 9c01eb15a282ce766d226b9a7ac1d0f0 {"aliquot_tag": "ALQ_99d2006b", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.RNA-Seq.S2_L001_R1.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R1_001.fastq.gz 3540967192 FASTQ S2_L001_R1 unaligned CPTAC3 98deb929-394e-4521-a710-17a9ced8c563 200e6b63ae5e6305d92b12179b49d52d {"aliquot_tag": "ALQ_de727abb", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05422.RNA-Seq.S2_L001_R2.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R2_001.fastq.gz 3953983587 FASTQ S2_L001_R2 unaligned CPTAC3 bdb1fa42-9e3e-4d2c-81ff-6bc23edfff98 e6a04f53ecd09463f7c5433ad5ccfaa7 {"aliquot_tag": "ALQ_de727abb", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05422.RNA-Seq.transcriptome.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.transcriptome.gdc_realn.bam 11108775006 BAM transcriptome harmonized CPTAC3 6a999b3a-4747-4291-866a-502b916f16eb 6b447e370993d0fce6118fe2aed029f2 {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.RNA-Seq.transcriptome.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.transcriptome.gdc_realn.bam 9388775502 BAM transcriptome harmonized CPTAC3 2cba8198-3ece-4df9-a5ae-dcec9f8ff27d 476ad4b4163aa067288cb1cc90ac2c75 {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor"} -C3L-05422.WGS.N C3L-05422 LSCC WGS blood_normal CPT0282870002 CPT0282870002.WholeGenome.RP-2158.bam 20527970747 BAM aligned CPTAC3 53c13f63-138e-40ab-9e08-b81eeceebc01 1a58a6c570761dd6b22df8494f069ca7 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal"} -C3L-05422.WGS.N.hg38 C3L-05422 LSCC WGS blood_normal CPT0282870002 58dbf06a-1bc2-493f-905b-956771ec2bc8_wgs_gdc_realn.bam 60388857773 BAM harmonized CPTAC3 493be082-54f7-41a0-b48b-8282e4c88bcd 1e775aba3d149b7c145ee7fc26c2be92 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal"} -C3L-05422.WGS.T C3L-05422 LSCC WGS tumor CPT0282750006 CPT0282750006.WholeGenome.RP-2158.bam 21849410222 BAM aligned CPTAC3 19aee1e9-f55a-4d5e-9714-a6785cc901d1 131523ea97ef6f558f134d9e428bf8f9 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor"} -C3L-05422.WGS.T.hg38 C3L-05422 LSCC WGS tumor CPT0282750006 e1adca1b-d3ed-4a3c-9461-ba555f6dc9d5_wgs_gdc_realn.bam 64155383213 BAM harmonized CPTAC3 2f28496f-496d-4306-a731-b78675e1c6f5 8a9ece80062a0144f57e16f0e73c4a20 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor"} -C3L-05422.WXS.A C3L-05422 LSCC WXS tissue_normal CPT0282760006 CPT0282760006.WholeExome.RP-1303.bam 24151527536 BAM aligned CPTAC3 f80c05e1-c7bc-479f-ba63-ae2ea88863ac 39beb78883083b42fa5e3b18aec7e076 {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.WXS.A.hg38 C3L-05422 LSCC WXS tissue_normal CPT0282760006 6d55a111-6829-455b-a906-fac4278a4aec_wxs_gdc_realn.bam 33742031511 BAM harmonized CPTAC3 5099d6b3-eb42-451f-93a3-28aa9206a52e 36667199bd3362dc3d2836d03f3dc42c {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05422.WXS.N C3L-05422 LSCC WXS blood_normal CPT0282870002 CPT0282870002.WholeExome.RP-1303.bam 23894423966 BAM aligned CPTAC3 27416987-3453-46d0-a825-9825f82f5632 15972ab29783aca213d27829f579b0a9 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal"} -C3L-05422.WXS.N.hg38 C3L-05422 LSCC WXS blood_normal CPT0282870002 58dbf06a-1bc2-493f-905b-956771ec2bc8_wxs_gdc_realn.bam 31523052072 BAM harmonized CPTAC3 aef76482-2398-4850-84a5-d9f24de28e8d fdb75f8dabac4f13d4a79bfc990639a1 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal"} -C3L-05422.WXS.T C3L-05422 LSCC WXS tumor CPT0282750006 CPT0282750006.WholeExome.RP-1303.bam 27829649619 BAM aligned CPTAC3 d5f95c55-28e2-4c56-a9d7-af2fb8b5be47 fc6a2d772c7b8d456d0107c47469fb99 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor"} -C3L-05422.WXS.T.hg38 C3L-05422 LSCC WXS tumor CPT0282750006 e1adca1b-d3ed-4a3c-9461-ba555f6dc9d5_wxs_gdc_realn.bam 38268593434 BAM harmonized CPTAC3 adad0686-9672-469d-9005-c57589b55b3b 14d18913c8aa1e987046bb922604c8a9 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor"} -C3L-05423.MethArray.Green.A C3L-05423 LSCC Methylation_Array tissue_normal CPT0282940006 204367490057_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 b7530e2d-035c-4594-9a4d-3c3857c7ba7c b846f41f58398be75dc1cdd690618889 {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.MethArray.Green.T C3L-05423 LSCC Methylation_Array tumor CPT0282910006 204367490066_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8cbeb207-88e9-4301-81bf-d9af19ea1bfc e3b285c50841a07d84e65dce05eeece9 {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor"} -C3L-05423.MethArray.Red.A C3L-05423 LSCC Methylation_Array tissue_normal CPT0282940006 204367490057_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 ae984167-376d-45ec-a5eb-87c076eb32ca 1ed738f1cab32230a4472b868cd8dc6e {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.MethArray.Red.T C3L-05423 LSCC Methylation_Array tumor CPT0282910006 204367490066_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 3fd3a015-7cca-49e1-bdea-f012fb5448e2 07836d23702cff32e8381d7864e863ee {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor"} -C3L-05423.miRNA-Seq.A.hg38 C3L-05423 LSCC miRNA-Seq tissue_normal CPT0282940009 67ecec66-0c7f-4502-a7aa-e741905e25ee_mirnaseq_gdc_realn.bam 243275197 BAM harmonized CPTAC3 18cba86f-8020-4991-80b1-b17dfa90fe53 08f8a85307775e840b164695859a2aa1 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.miRNA-Seq.S15_L005_R1.A C3L-05423 LSCC miRNA-Seq tissue_normal CPT0282940009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGCTAC_S15_L005_R1_001.unaln.bam 220905639 BAM S15_L005_R1 unaligned CPTAC3 b4c29137-3e9c-480d-ac67-1092063ff911 9fe4dc20310d2a69b8c0ec2a571be166 {"aliquot_tag": "ALQ_d918327b", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.miRNA-Seq.S19_L006_R1.T C3L-05423 LSCC miRNA-Seq tumor CPT0282910009 200224_UNC31-K00269_0267_AHC722BBXY_GTGAAA_S19_L006_R1_001.unaln.bam 262297533 BAM S19_L006_R1 unaligned CPTAC3 1cc09d1a-848e-4eae-a5e1-65ec251dc813 0f4f5946a00e9c770266c5414b0ea3ed {"aliquot_tag": "ALQ_11f8bd0b", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05423.miRNA-Seq.T.hg38 C3L-05423 LSCC miRNA-Seq tumor CPT0282910009 24658a12-f698-4ee6-8f5c-234bf16a0d14_mirnaseq_gdc_realn.bam 282307073 BAM harmonized CPTAC3 6daf2460-533e-4da3-9fed-1d6954b3c4cc e5d11fe5c2d8a55cf1561d78e9166a21 {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor"} -C3L-05423.RNA-Seq.chimeric.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.chimeric.gdc_realn.bam 33811817 BAM chimeric harmonized CPTAC3 2c12b01d-1a8c-4c0a-9397-d04d2e740630 e6a64fdf07e2cc5b11c1ac27a2b07ca4 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.RNA-Seq.chimeric.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.chimeric.gdc_realn.bam 83999933 BAM chimeric harmonized CPTAC3 1924c79c-d271-4e64-9655-5f78b0e51390 7a24d53be35e0784a3593a4d5dcbd28e {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor"} -C3L-05423.RNA-Seq.genomic.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.genomic.gdc_realn.bam 8707607151 BAM genomic harmonized CPTAC3 9692e760-fe77-454e-a1f6-1c5b84d756ed 84b46a1c7cf066174426ed5724c401c4 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.RNA-Seq.genomic.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.genomic.gdc_realn.bam 9209438633 BAM genomic harmonized CPTAC3 5317b2df-411a-4c3d-95a9-34b570334044 c4193d5a75b9582248c3e1b2348b9747 {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor"} -C3L-05423.RNA-Seq.S11_L007_R1.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R1_001.fastq.gz 4415304198 FASTQ S11_L007_R1 unaligned CPTAC3 3b34808d-b27f-4482-a1ff-4d2e87b188b6 772f62b80e958d1798f37bf285b20d70 {"aliquot_tag": "ALQ_d918327b", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.RNA-Seq.S11_L007_R2.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R2_001.fastq.gz 4774818539 FASTQ S11_L007_R2 unaligned CPTAC3 81c7c5ab-c5e6-4df6-ae8e-fbefa9d7d1a0 afc7ea02ebf843b5bdea909cd6a89141 {"aliquot_tag": "ALQ_d918327b", "sample": "S11", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.RNA-Seq.S3_L001_R1.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R1_001.fastq.gz 4489332453 FASTQ S3_L001_R1 unaligned CPTAC3 d0ac19b2-1a83-4bb5-970f-85d1c79c2624 d20247e8fe1b44f2977f38645238d67d {"aliquot_tag": "ALQ_11f8bd0b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05423.RNA-Seq.S3_L001_R2.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R2_001.fastq.gz 4942844948 FASTQ S3_L001_R2 unaligned CPTAC3 c18b79e3-24ae-4e53-974e-2878757e4e00 16addfd396e311a877bb41b5ceb3ca75 {"aliquot_tag": "ALQ_11f8bd0b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05423.RNA-Seq.transcriptome.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.transcriptome.gdc_realn.bam 11141721613 BAM transcriptome harmonized CPTAC3 1d1380d4-f4f7-4454-8cdf-36794521909c 495282c8217cdd346e0526a6d01f9df3 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.RNA-Seq.transcriptome.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.transcriptome.gdc_realn.bam 11242863909 BAM transcriptome harmonized CPTAC3 31faa0cd-b25b-45b0-a432-e3846da4f56e 00c62cb140a366aac21a458700de21f1 {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor"} -C3L-05423.WGS.N C3L-05423 LSCC WGS blood_normal CPT0283050002 CPT0283050002.WholeGenome.RP-2158.bam 22150583479 BAM aligned CPTAC3 8eacf8d6-cb46-4406-b9d5-b5e1cb181811 17e947c7ccaa811c7ad179ce6ba13f7d {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal"} -C3L-05423.WGS.N.hg38 C3L-05423 LSCC WGS blood_normal CPT0283050002 473dfbc7-4094-4cb5-9f0e-152bdcc320d3_wgs_gdc_realn.bam 66453981376 BAM harmonized CPTAC3 2168c0d3-9223-43d5-8288-7580f45353be c0705eee3f92fa5d8689335ba767872e {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal"} -C3L-05423.WGS.T C3L-05423 LSCC WGS tumor CPT0282910006 CPT0282910006.WholeGenome.RP-2158.bam 24643260116 BAM aligned CPTAC3 897e4ec6-9dc6-40eb-90cb-369c300baa76 cf399450618b3cc855f2f47ce117a9eb {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor"} -C3L-05423.WGS.T.hg38 C3L-05423 LSCC WGS tumor CPT0282910006 8f8f8717-6151-4224-99ce-d7b74db7fe3e_wgs_gdc_realn.bam 74516106560 BAM harmonized CPTAC3 0ea222ee-5ab4-4e63-8bfa-71829ea50d62 1d671acddba64afda2f60482e636f23f {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor"} -C3L-05423.WXS.A C3L-05423 LSCC WXS tissue_normal CPT0282940006 CPT0282940006.WholeExome.RP-1303.bam 30693215316 BAM aligned CPTAC3 089c8215-8560-44a0-8b60-894e7a7bf15e 22f3672df89dd9bff6df3c20a54e7e02 {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.WXS.A.hg38 C3L-05423 LSCC WXS tissue_normal CPT0282940006 91602c8f-b28e-4150-8331-405284e3698b_wxs_gdc_realn.bam 42261598202 BAM harmonized CPTAC3 68440bdc-b72c-401d-8f9b-3d3cfbc4c374 ac55bae9a0fcd0e5bed8fe59bd5a0d09 {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05423.WXS.N C3L-05423 LSCC WXS blood_normal CPT0283050002 CPT0283050002.WholeExome.RP-1303.bam 24460226474 BAM aligned CPTAC3 99bca1c2-26dd-4f6b-819d-4f74df6f3ae7 df467a62e5a32262850596986bdae55f {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal"} -C3L-05423.WXS.N.hg38 C3L-05423 LSCC WXS blood_normal CPT0283050002 473dfbc7-4094-4cb5-9f0e-152bdcc320d3_wxs_gdc_realn.bam 33415160294 BAM harmonized CPTAC3 d2d0dc18-4558-4422-820e-afdd32f6ce69 9055699c4002b4aca9c09ff7eda29f6b {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal"} -C3L-05423.WXS.T C3L-05423 LSCC WXS tumor CPT0282910006 CPT0282910006.WholeExome.RP-1303.bam 20960949642 BAM aligned CPTAC3 a7ffe73a-d310-4fbc-8dec-eda3c02efa1d 29f235d9e7ed4a4a8fbd1c6658e56238 {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor"} -C3L-05423.WXS.T.hg38 C3L-05423 LSCC WXS tumor CPT0282910006 8f8f8717-6151-4224-99ce-d7b74db7fe3e_wxs_gdc_realn.bam 28753464387 BAM harmonized CPTAC3 5be1a3eb-0e8b-48a7-9c7c-3434ac189f80 150f249fe3af3a4e2d3d3fee0d21e556 {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor"} -C3L-05427.MethArray.Green.A C3L-05427 LSCC Methylation_Array tissue_normal CPT0284190006 204367470127_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 c59739c1-6d64-413d-9699-e9fc2c3e1396 49af47e58c45d899f47437ceec16ba92 {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.MethArray.Green.T C3L-05427 LSCC Methylation_Array tumor CPT0284130006 204372030090_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 c2390f3c-4ded-4677-9f15-8bb53e4d0908 f317ae41d32b4adf9870fc5c99b158dd {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor"} -C3L-05427.MethArray.Red.A C3L-05427 LSCC Methylation_Array tissue_normal CPT0284190006 204367470127_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 a6b80daa-77e3-4715-89ec-4ededde4a8e8 8362dafeb9ac056b26f469751ffce46c {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.MethArray.Red.T C3L-05427 LSCC Methylation_Array tumor CPT0284130006 204372030090_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 e8bc377d-ace0-4427-beea-c1646c1f8c91 2be81390ffb8f42e4c6d81dc10103f3c {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor"} -C3L-05427.miRNA-Seq.A.hg38 C3L-05427 LSCC miRNA-Seq tissue_normal CPT0284190009 0269e8d7-0019-49cd-944f-e1bf88b5db0d_mirnaseq_gdc_realn.bam 269402093 BAM harmonized CPTAC3 1c7b9c8a-c17d-4ba2-98a1-7d89a52159bd cb9144598f1086a9063b2a579af6314e {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.miRNA-Seq.S11_L005_R1.A C3L-05427 LSCC miRNA-Seq tissue_normal CPT0284190009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTTGTA_S11_L005_R1_001.unaln.bam 245084783 BAM S11_L005_R1 unaligned CPTAC3 b8cddc57-1064-405e-94bd-a09276462aa9 b876a4e8bddca377045ae35952cb1f36 {"aliquot_tag": "ALQ_ae0b419d", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.miRNA-Seq.S20_L006_R1.T C3L-05427 LSCC miRNA-Seq tumor CPT0284130009 200224_UNC31-K00269_0267_AHC722BBXY_GTGGCC_S20_L006_R1_001.unaln.bam 249618803 BAM S20_L006_R1 unaligned CPTAC3 a3bd39fa-7b10-4d61-a08f-d2417de4a5a5 6d02efd3363b303b1904456f866e26ee {"aliquot_tag": "ALQ_e4bb593c", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05427.miRNA-Seq.T.hg38 C3L-05427 LSCC miRNA-Seq tumor CPT0284130009 b8e972d6-c1a1-4e51-817e-3a7e59f61408_mirnaseq_gdc_realn.bam 272874656 BAM harmonized CPTAC3 d5fff9ef-452e-4c33-bc55-8e5862981b11 ad3c9d6597dcd9a518d8e11c104619ff {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor"} -C3L-05427.RNA-Seq.chimeric.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.chimeric.gdc_realn.bam 32473147 BAM chimeric harmonized CPTAC3 c272b879-482f-4358-979e-9e6cb1fdcc19 cdba34b3e1ff339432026437c49d9365 {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.RNA-Seq.chimeric.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.chimeric.gdc_realn.bam 41992246 BAM chimeric harmonized CPTAC3 0296d1a5-0eb8-4a7f-a0c7-bfb5e6cef506 4b0f43d2e7e53d20976daf250f3cb3b1 {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor"} -C3L-05427.RNA-Seq.genomic.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.genomic.gdc_realn.bam 8078941065 BAM genomic harmonized CPTAC3 53f2a33e-c003-42fa-a61e-632e2e532e88 619c7e3f6e09e815adbee89245a72633 {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.RNA-Seq.genomic.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.genomic.gdc_realn.bam 6879443317 BAM genomic harmonized CPTAC3 d1780a60-cc51-46a4-ba05-7fc5dc40e3a2 e321d257e9123a1475e21e57eea73580 {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor"} -C3L-05427.RNA-Seq.S12_L007_R1.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R1_001.fastq.gz 3970850364 FASTQ S12_L007_R1 unaligned CPTAC3 482b9386-177c-4b58-911b-71dcf0bc091e d5bcb11c75e7805eab47f8b377709f6b {"aliquot_tag": "ALQ_ae0b419d", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.RNA-Seq.S12_L007_R2.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R2_001.fastq.gz 4257470120 FASTQ S12_L007_R2 unaligned CPTAC3 05e7e5ac-bda1-4b39-9be2-13a7ed728760 35f96b78b2854625d31f132962e503f9 {"aliquot_tag": "ALQ_ae0b419d", "sample": "S12", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.RNA-Seq.S4_L001_R1.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R1_001.fastq.gz 3152343958 FASTQ S4_L001_R1 unaligned CPTAC3 1e71dff6-a4f6-4b2f-997b-97333d743138 13b58788ddeaebf60f6560ff1d214f3b {"aliquot_tag": "ALQ_e4bb593c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05427.RNA-Seq.S4_L001_R2.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R2_001.fastq.gz 3502760688 FASTQ S4_L001_R2 unaligned CPTAC3 0985bf86-4c08-4c25-b649-faf95cb52e85 c0652aec66606cc7e4f0f11ef16be5b7 {"aliquot_tag": "ALQ_e4bb593c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05427.RNA-Seq.transcriptome.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.transcriptome.gdc_realn.bam 9040150093 BAM transcriptome harmonized CPTAC3 d154d069-8347-4e30-b69f-e5a7c47eda5b 3b4567afc2340afe7ba92a43e5dc9d8f {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.RNA-Seq.transcriptome.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.transcriptome.gdc_realn.bam 8537298565 BAM transcriptome harmonized CPTAC3 9e4e0a2c-e1fc-4e7c-b15f-381225f47e83 8c895a534f08ff3e2df649ebaf2da29a {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor"} -C3L-05427.WGS.N C3L-05427 LSCC WGS blood_normal CPT0284290002 CPT0284290002.WholeGenome.RP-2158.bam 32294248540 BAM aligned CPTAC3 74d939ff-9663-4484-ab5d-b95e8af97548 c3847962e4f1417c6a4a014708c54bdb {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05427.WGS.N.hg38 C3L-05427 LSCC WGS blood_normal CPT0284290002 e5dcd75a-3cd2-41b2-8297-a1fce506b09a_wgs_gdc_realn.bam 96467113094 BAM harmonized CPTAC3 28017ff1-f4d8-485f-b4fd-a52523420749 ce00db170ed1c9f28e54d8452890e8d0 {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05427.WGS.T C3L-05427 LSCC WGS tumor CPT0284130006 CPT0284130006.WholeGenome.RP-2158.bam 31112324564 BAM aligned CPTAC3 a56bfc48-fb37-40a3-868d-e1ed0cb7b763 029a7667b029945119db5dd32355017b {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor"} -C3L-05427.WGS.T.hg38 C3L-05427 LSCC WGS tumor CPT0284130006 9a304621-e269-441a-97e1-ada9ebee23ab_wgs_gdc_realn.bam 90804062569 BAM harmonized CPTAC3 4329ac2a-b1af-4698-9bc5-8cf6776181b4 5833de3b1eb6d7ca6abce2b7ce4c04b9 {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor"} -C3L-05427.WXS.A C3L-05427 LSCC WXS tissue_normal CPT0284190006 CPT0284190006.WholeExome.RP-1303.bam 20287751058 BAM aligned CPTAC3 c2f9d846-ab71-4646-8b1f-75c2383861a7 51730ae31362f3be0f7f9cba32cb1b34 {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.WXS.A.hg38 C3L-05427 LSCC WXS tissue_normal CPT0284190006 e601381f-98e6-46dd-ac85-74872070c262_wxs_gdc_realn.bam 27398556566 BAM harmonized CPTAC3 a834306f-32fc-4eaf-8124-a89c6c95f161 017ce6c1cfaa5dc88ff0ab4adf5c0e62 {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05427.WXS.N C3L-05427 LSCC WXS blood_normal CPT0284290002 CPT0284290002.WholeExome.RP-1303.bam 23338885419 BAM aligned CPTAC3 584090ba-e625-49c7-80b1-5dd9e1efc009 658de42e80b3ec61c7e5c67bdf4d142b {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05427.WXS.N.hg38 C3L-05427 LSCC WXS blood_normal CPT0284290002 e5dcd75a-3cd2-41b2-8297-a1fce506b09a_wxs_gdc_realn.bam 32095146017 BAM harmonized CPTAC3 ccf61fe8-7e9e-4b2f-b66c-525a448b239a 44b23e475afab1730397e93f4072e255 {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal"} -C3L-05427.WXS.T C3L-05427 LSCC WXS tumor CPT0284130006 CPT0284130006.WholeExome.RP-1303.bam 24334654519 BAM aligned CPTAC3 a7d58a6e-31c5-418d-bb3e-f2e58ab7e6b8 1cc632cfc4596f6bb9032d17c20e3df9 {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor"} -C3L-05427.WXS.T.hg38 C3L-05427 LSCC WXS tumor CPT0284130006 9a304621-e269-441a-97e1-ada9ebee23ab_wxs_gdc_realn.bam 34360457479 BAM harmonized CPTAC3 0d99b3c6-8607-4db4-809e-71d194603e86 78aef2f145b867c5a731726e7755d38b {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor"} -C3L-05428.MethArray.Green.A C3L-05428 LSCC Methylation_Array tissue_normal CPT0291840006 204372030013_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 7f1223e4-df6b-41c0-8b50-6c287bdbd0e1 f8073de43913de62f4165d0926cd6213 {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05428.MethArray.Green.T C3L-05428 LSCC Methylation_Array tumor CPT0291810006 204372030090_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f9818241-3052-4004-8169-2be2d184e809 91ba102dc02d52bb7dd623e89318cf8f {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor"} -C3L-05428.MethArray.Red.A C3L-05428 LSCC Methylation_Array tissue_normal CPT0291840006 204372030013_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 ec90d70d-9efc-488e-9ead-f67cf77edbb4 ffb48d1d0e85c44e5dc363afe7b1ec9e {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05428.MethArray.Red.T C3L-05428 LSCC Methylation_Array tumor CPT0291810006 204372030090_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 9458439d-314f-4510-8ff9-29361752a5ef d7034f5f394b96eb1e525115cbba6338 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor"} -C3L-05428.miRNA-Seq.S5_L001_R1.T C3L-05428 LSCC miRNA-Seq tumor CPT0291810009 200325_UNC31-K00269_0272_AHHC2NBBXY_CAACTA_S5_L001_R1_001.unaln.bam 267387157 BAM S5_L001_R1 unaligned CPTAC3 5c302e2a-c45b-4638-b95a-0c536c939b90 d4ac39d9ba14932e2b10ef1e46abea76 {"aliquot_tag": "ALQ_27e674ad", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05428.miRNA-Seq.T.hg38 C3L-05428 LSCC miRNA-Seq tumor CPT0291810009 84acd2a0-dc88-4125-b5ac-cb038ac723ea_mirnaseq_gdc_realn.bam 298961510 BAM harmonized CPTAC3 66e2fdad-5f58-4147-84de-3ca1cb8b9cd1 ba6519bb7c3d18680990e610586c2831 {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor"} -C3L-05428.RNA-Seq.chimeric.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.chimeric.gdc_realn.bam 101906890 BAM chimeric harmonized CPTAC3 9ccc4094-56fb-4642-b139-c1d580db126e 330818ee75818f1b496fc64a3ea5abcf {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor"} -C3L-05428.RNA-Seq.genomic.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.genomic.gdc_realn.bam 6991738707 BAM genomic harmonized CPTAC3 c3c2a753-89a2-44f2-b883-2225b5cd75df 9c8cd8b8e13c5c3dfbd20c07c0359492 {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor"} -C3L-05428.RNA-Seq.S13_L004_R1.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R1_001.fastq.gz 3442364882 FASTQ S13_L004_R1 unaligned CPTAC3 5fabb5b3-0d33-4be8-92c3-d3239d33d978 73e5e1734fd71bce85adf761ac8bd02d {"aliquot_tag": "ALQ_27e674ad", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05428.RNA-Seq.S13_L004_R2.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R2_001.fastq.gz 3624151545 FASTQ S13_L004_R2 unaligned CPTAC3 e5c5af32-42c1-4e4f-97f3-4bda6ed36973 4f2e492be320a4598ce0df0585fddff2 {"aliquot_tag": "ALQ_27e674ad", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05428.RNA-Seq.transcriptome.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.transcriptome.gdc_realn.bam 9711237027 BAM transcriptome harmonized CPTAC3 f39fd343-26c2-4d7b-a642-ae0c1b4fbefb 797130fad973f92ba217f6891d6e4089 {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor"} -C3L-05428.WGS.N C3L-05428 LSCC WGS blood_normal CPT0291940005 CPT0291940005.WholeGenome.RP-2158.bam 26713109649 BAM aligned CPTAC3 f858d924-8cfd-4b5e-8817-93efe7375be9 49ce2827bce31f04ce3aaf96f27864cc {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal"} -C3L-05428.WGS.N.hg38 C3L-05428 LSCC WGS blood_normal CPT0291940005 dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wgs_gdc_realn.bam 78704546334 BAM harmonized CPTAC3 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 284ce87e66a06080f97dbd32e0e6773e {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal"} -C3L-05428.WGS.T C3L-05428 LSCC WGS tumor CPT0291810006 CPT0291810006.WholeGenome.RP-2158.bam 24519926345 BAM aligned CPTAC3 b3c235ca-3f1c-4789-be85-a9d6cd5ada65 e51265c932893abf3901fffff6a1a925 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor"} -C3L-05428.WGS.T.hg38 C3L-05428 LSCC WGS tumor CPT0291810006 d15d106b-64ab-4e62-a0f3-dd22920946b7_wgs_gdc_realn.bam 71384825686 BAM harmonized CPTAC3 30a31e54-8637-431b-ad11-88efc4c79940 2602b01ea3e41a9720b5d3156c349d98 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor"} -C3L-05428.WXS.A C3L-05428 LSCC WXS tissue_normal CPT0291840006 CPT0291840006.WholeExome.RP-1303.bam 41017629080 BAM aligned CPTAC3 085e18c3-0d71-486f-b6d0-28838ac1ec99 5985041855e7cd48cd696d9bcf419b66 {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05428.WXS.A.hg38 C3L-05428 LSCC WXS tissue_normal CPT0291840006 3cf95cf1-d530-4e8f-8636-fc4c00544a79_wxs_gdc_realn.bam 57634535665 BAM harmonized CPTAC3 88cc923f-c526-4dbc-ad2e-5408417b84c6 3cd27c0639c8cd79cbb1cd90c1d5b668 {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05428.WXS.N C3L-05428 LSCC WXS blood_normal CPT0291940005 CPT0291940005.WholeExome.RP-1303.bam 19821060847 BAM aligned CPTAC3 e54401a7-aa02-4622-b779-42b358b01c34 4a9e14f66bf6119c504958cb4363e27d {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal"} -C3L-05428.WXS.N.hg38 C3L-05428 LSCC WXS blood_normal CPT0291940005 dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wxs_gdc_realn.bam 27128996700 BAM harmonized CPTAC3 e0e577de-1274-43bf-8429-4455a49bc8f0 0ba2ca5893c3718a5f77c9243bbd03ff {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal"} -C3L-05428.WXS.T C3L-05428 LSCC WXS tumor CPT0291810006 CPT0291810006.WholeExome.RP-1303.bam 23608371967 BAM aligned CPTAC3 ac1ecbfd-471b-44a9-b30c-ffb502e82c03 1143dca543fa1105e2da62f32c6f87c6 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor"} -C3L-05428.WXS.T.hg38 C3L-05428 LSCC WXS tumor CPT0291810006 d15d106b-64ab-4e62-a0f3-dd22920946b7_wxs_gdc_realn.bam 32513969425 BAM harmonized CPTAC3 4ee6dd42-2580-49b0-a029-87b4f04d337d c976bf22b578d9a424002323a8eb866c {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor"} -C3L-05448.RNA-Seq.chimeric.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.chimeric.gdc_realn.bam 127241384 BAM chimeric harmonized CPTAC3 bf3e4910-87fe-4357-ace5-88c0874d8b8c 0ff2ee26980be380ef709a6ab286a466 {"aliquot_tag": "ALQ_877ef843", "gdc_sample_type": "Primary Tumor"} -C3L-05448.RNA-Seq.genomic.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.genomic.gdc_realn.bam 7433271618 BAM genomic harmonized CPTAC3 c18423d5-5414-4662-902f-0de7a163f3b9 649c045598cf471e85625711f00cff26 {"aliquot_tag": "ALQ_877ef843", "gdc_sample_type": "Primary Tumor"} -C3L-05448.RNA-Seq.S63_R1.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R1_001.fastq.gz 4572720057 FASTQ S63_R1 unaligned CPTAC3 5e9ab5e9-a634-4d07-824b-f4e8ee9d6c48 25d6576979814018ff01197b65541216 {"aliquot_tag": "ALQ_877ef843", "sample": "S63", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05448.RNA-Seq.S63_R2.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R2_001.fastq.gz 4726951635 FASTQ S63_R2 unaligned CPTAC3 8bafe422-0f9f-4758-a7b8-a6c209c556bc e0263cc9db7904c3321e32d10269d5b3 {"aliquot_tag": "ALQ_877ef843", "sample": "S63", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05448.RNA-Seq.transcriptome.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.transcriptome.gdc_realn.bam 4885048779 BAM transcriptome harmonized CPTAC3 7ff9fdb1-5576-40f1-80a4-d7bfad77905e eb3fc895ecd2141d2b491ab64efac047 {"aliquot_tag": "ALQ_877ef843", "gdc_sample_type": "Primary Tumor"} -C3L-05459.RNA-Seq.chimeric.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.chimeric.gdc_realn.bam 121584478 BAM chimeric harmonized CPTAC3 cb11b0c4-4986-4f17-ae21-65d7c1757042 b66d2bfd2df8cd2afc6ef9f5e1cc4bde {"aliquot_tag": "ALQ_355e2453", "gdc_sample_type": "Primary Tumor"} -C3L-05459.RNA-Seq.genomic.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.genomic.gdc_realn.bam 6283609377 BAM genomic harmonized CPTAC3 0f613a46-93b2-4a75-82d8-12e34fa2f1db 59346724db0ce30bfa843a2db9958932 {"aliquot_tag": "ALQ_355e2453", "gdc_sample_type": "Primary Tumor"} -C3L-05459.RNA-Seq.S86_R1.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R1_001.fastq.gz 3492491548 FASTQ S86_R1 unaligned CPTAC3 0fd059e0-8cd2-4805-b894-e168b8a80c03 26e4a50cde3e13b05cd9ac4e7b996249 {"aliquot_tag": "ALQ_355e2453", "sample": "S86", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05459.RNA-Seq.S86_R2.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R2_001.fastq.gz 3621749148 FASTQ S86_R2 unaligned CPTAC3 160145eb-2e8c-497f-9985-4563f5193f36 82dc3b8a4116f5b2ae936df5301a98e7 {"aliquot_tag": "ALQ_355e2453", "sample": "S86", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05459.RNA-Seq.transcriptome.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.transcriptome.gdc_realn.bam 3252015206 BAM transcriptome harmonized CPTAC3 845772a1-3c26-4c8b-8acc-6a7b85a89375 15918b9107092f18a716409edeec1839 {"aliquot_tag": "ALQ_355e2453", "gdc_sample_type": "Primary Tumor"} -C3L-05465.RNA-Seq.chimeric.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.chimeric.gdc_realn.bam 132294776 BAM chimeric harmonized CPTAC3 2ecd3291-44d1-45f7-b1c4-bcd72f4a5289 34061b33d3116dd622705deaf33f97e8 {"aliquot_tag": "ALQ_71420256", "gdc_sample_type": "Primary Tumor"} -C3L-05465.RNA-Seq.genomic.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.genomic.gdc_realn.bam 6302744426 BAM genomic harmonized CPTAC3 a98e3073-584c-492a-9a50-91beef6768f5 d64dcaac21f3591c708c65423fffac62 {"aliquot_tag": "ALQ_71420256", "gdc_sample_type": "Primary Tumor"} -C3L-05465.RNA-Seq.S4_R1.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R1_001.fastq.gz 3613717401 FASTQ S4_R1 unaligned CPTAC3 6739f032-f05a-480d-b1d0-fced61f3632d 8afb91abe549d0af7e1d6b48412fbbd4 {"aliquot_tag": "ALQ_71420256", "sample": "S4", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05465.RNA-Seq.S4_R2.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R2_001.fastq.gz 3694903230 FASTQ S4_R2 unaligned CPTAC3 3150177d-8dd0-46f7-ab8c-66b5510430ed dc63f3f26ab929bf9a805c5731d03ea8 {"aliquot_tag": "ALQ_71420256", "sample": "S4", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05465.RNA-Seq.transcriptome.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.transcriptome.gdc_realn.bam 3552076423 BAM transcriptome harmonized CPTAC3 268c58c7-b05c-404c-8d2c-6d6544297bdc 8b0c8ac4a5a458e7dd9062110228d162 {"aliquot_tag": "ALQ_71420256", "gdc_sample_type": "Primary Tumor"} -C3L-05481.MethArray.Green.T C3L-05481 GBM Methylation_Array tumor CPT0406370007 205555380136_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b274228f-a33a-4fb8-be3d-4347e24c4b4e 225bc30691593a737d6c98434d1b23e1 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor"} -C3L-05481.MethArray.Red.T C3L-05481 GBM Methylation_Array tumor CPT0406370007 205555380136_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 b7cc2ed3-f7c8-4d53-9333-a4b3ae5995fe 0f7794d81e119ed0faf6458d6f782d13 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor"} -C3L-05481.miRNA-Seq.S15_L005_R1.T C3L-05481 GBM miRNA-Seq tumor CPT0406370010 210702_UNC32-K00270_0289_AHKJ22BBXY_GTCCGC_S15_L005_R1_001.unaln.bam 264616979 BAM S15_L005_R1 unaligned CPTAC3 4f47ee8c-81de-4193-b564-8f30527bde03 bd7c43b58fe85ba387cab46d6dc954fc {"aliquot_tag": "ALQ_b54a404", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05481.miRNA-Seq.T.hg38 C3L-05481 GBM miRNA-Seq tumor CPT0406370010 beb1e815-10d6-4145-a590-b0bac3262df0_mirnaseq_gdc_realn.bam 301592256 BAM harmonized CPTAC3 be6181ff-2781-441f-94da-d9b4b4d648b7 bcd3ad9dab57609864be130c6e2d45bd {"aliquot_tag": "ALQ_b54a404", "gdc_sample_type": "Primary Tumor"} -C3L-05481.REP_c39601d.miRNA-Seq.S1_L001_R1.T C3L-05481 GBM miRNA-Seq tumor CPT0406370014 CPT3_06548_V0043_CACCGG_S1_L001_R1_001.unaln.bam 413940848 BAM S1_L001_R1 unaligned CPTAC3 05af431a-cc4d-4fa4-9bdd-89c9d383c814 5d5b17d719a34b6fb2bc9e0dee77229f {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05481.REP_c39601d.miRNA-Seq.T.hg38 C3L-05481 GBM miRNA-Seq tumor CPT0406370014 207ea4f5-3879-4020-a97a-74c878ab4b97_mirnaseq_gdc_realn.bam 442930900 BAM harmonized CPTAC3 174e4802-6ddb-4836-90e7-1c058cf33a09 8cc0120124a1a575cedb352c1f6d6407 {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor"} -C3L-05481.REP_c39601d.RNA-Seq.chimeric.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.chimeric.gdc_realn.bam 77563686 BAM chimeric harmonized CPTAC3 e7ab2665-128f-4c63-9a08-44df946182c0 d0d4670ae1270f857e04a8bfc63c5e32 {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor"} -C3L-05481.REP_c39601d.RNA-Seq.genomic.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.genomic.gdc_realn.bam 10592084573 BAM genomic harmonized CPTAC3 2082ee2c-ae10-4125-ad40-a9543b528a1b 750c71c5e16ba369d476fdd671b12a7a {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor"} -C3L-05481.REP_c39601d.RNA-Seq.S22_L008_R1.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R1_001.fastq.gz 5087451384 FASTQ S22_L008_R1 unaligned CPTAC3 3943d597-a775-439b-a983-db12f9b0ec2d 9ae0e4aeafca73fde582263acb70f39d {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05481.REP_c39601d.RNA-Seq.S22_L008_R2.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R2_001.fastq.gz 5149213973 FASTQ S22_L008_R2 unaligned CPTAC3 23eac32e-93a9-48a9-8cfd-f14448fb7fd5 35aa154ddbc3e6868b5f26f15f7e664f {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05481.REP_c39601d.RNA-Seq.transcriptome.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.transcriptome.gdc_realn.bam 12581250677 BAM transcriptome harmonized CPTAC3 8e8438ad-e850-482a-9906-2709d8470ee7 5b190f2c0b46e370b832941aa6593c27 {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor"} -C3L-05481.WGS.N C3L-05481 GBM WGS blood_normal CPT0402530002 CPT0402530002.WholeGenome.RP-2158.bam 29970507182 BAM aligned CPTAC3 bb8107e4-5d08-4ec2-864c-ef43b68e9592 c971d6cb2c361e6c02ff0643fde6b224 {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-05481.WGS.N.hg38 C3L-05481 GBM WGS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wgs_gdc_realn.bam 85653132726 BAM harmonized CPTAC3 299c23c9-022e-44e9-82fd-c42f53062863 ba393e5c4b564b287696738dab22fe0a {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-05481.WGS.T C3L-05481 GBM WGS tumor CPT0406370007 CPT0406370007.WholeGenome.RP-2158.bam 26730645651 BAM aligned CPTAC3 877bc903-d839-4593-9bda-139d1e265cd6 cfa533343db9a20296ffa876780aa333 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor"} -C3L-05481.WGS.T.hg38 C3L-05481 GBM WGS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wgs_gdc_realn.bam 78487180893 BAM harmonized CPTAC3 7e51a55c-1945-4568-9355-6f037446733b 4d057f020233743d85f33cbc6cb94fc4 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor"} -C3L-05481.WXS.N C3L-05481 GBM WXS blood_normal CPT0402530002 CPT0402530002.WholeExome.RP-1303.bam 25763962021 BAM aligned CPTAC3 e1266ab9-bddb-4450-a91c-99bef557e50c 9d57faa9638e8f0ee960aa1744bdb419 {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-05481.WXS.N.hg38 C3L-05481 GBM WXS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wxs_gdc_realn.bam 35734641239 BAM harmonized CPTAC3 c951e25c-569b-4330-9f20-c9cf57eb8291 63a915287afce5cc7c954209ccb0e937 {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal"} -C3L-05481.WXS.T C3L-05481 GBM WXS tumor CPT0406370007 CPT0406370007.WholeExome.RP-1303.bam 22329938537 BAM aligned CPTAC3 3d539fca-80f3-44fa-8984-c29a9b1eb26f fc5df7ed9642071d1df3a6696dbd1ecc {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor"} -C3L-05481.WXS.T.hg38 C3L-05481 GBM WXS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wxs_gdc_realn.bam 30699521739 BAM harmonized CPTAC3 e6b33d67-a8b0-42ce-8994-6e3e5e782da4 8414079d0f7b780a474c3e6ddc35fd21 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor"} -C3L-05571.MethArray.Green.T C3L-05571 UCEC Methylation_Array tumor CPT0275270009 204372030024_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 94b106fb-b0c9-4e73-917f-f9792591e6ec d6ed0930b2680bf5233e71cd3ebd4d1e {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor"} -C3L-05571.MethArray.Red.T C3L-05571 UCEC Methylation_Array tumor CPT0275270009 204372030024_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 7ef175a4-38e0-46ab-8634-93b3c4926cbc 3e030b20324cb1f88c2a3750d2421bdb {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor"} -C3L-05571.miRNA-Seq.S41_L008_R1.T C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 200513_UNC31-K00269_0278_BHH7Y7BBXY_GACGAC_S41_L008_R1_001.unaln.bam 252365298 BAM S41_L008_R1 unaligned CPTAC3 68c3bd9e-8acb-4f9f-976e-f7f1bf8ac0ae 1c23c36fb9b06a8aa42e4c82cf7ed060 {"aliquot_tag": "ALQ_784789db", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05571.miRNA-Seq.T.hg38 C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 4d4fc8c8-6fcf-43c1-949c-8efc153cd3cc_mirnaseq_gdc_realn.bam 277898639 BAM harmonized CPTAC3 e3dbc3e5-624a-408e-84fc-7246980d86e6 1d74fae8408096b00aa52e1dec0937cf {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.chimeric.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.chimeric.gdc_realn.bam 31372704 BAM chimeric harmonized CPTAC3 59baf4c0-b84c-4982-8741-35f9bd287501 210cc55eb410e3bbcb95b4f48d83cdf2 {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.chimeric.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.chimeric.gdc_realn.bam 275239026 BAM chimeric harmonized CPTAC3 e4a0a1d9-9c88-4829-a210-9441b20f3af9 2b5f264deac1155c6791a50fd6d16aaf {"aliquot_tag": "ALQ_85487430", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.genomic.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.genomic.gdc_realn.bam 7201732289 BAM genomic harmonized CPTAC3 d65e77a6-0a45-45ff-8f9d-fb0587bacb79 6b55b67ba4187a9dd0108fd959cb03bd {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.genomic.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.genomic.gdc_realn.bam 11480968788 BAM genomic harmonized CPTAC3 33358c41-a242-4b2d-9708-2fcf511319db 724812968ea3449f368b783132a6022a {"aliquot_tag": "ALQ_85487430", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.S68_L008_R1.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R1_001.fastq.gz 3538685411 FASTQ S68_L008_R1 unaligned CPTAC3 81f527a8-8a38-474b-a8e7-fd70b107bfc4 e7fa4f00a627383f222ebbaeefae034e {"aliquot_tag": "ALQ_784789db", "sample": "S68", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.S68_L008_R2.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R2_001.fastq.gz 3740963385 FASTQ S68_L008_R2 unaligned CPTAC3 9ee12b8b-d9df-4948-80c5-cc88369fd22f 9cb9a7315c51c7d088f507b8e0c3834a {"aliquot_tag": "ALQ_784789db", "sample": "S68", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.S82_R1.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R1_001.fastq.gz 6462107526 FASTQ S82_R1 unaligned CPTAC3 f995e15d-bf67-4679-a6f6-0aa8a4af1593 d0157e053b11ab4eeee125c00a94407d {"aliquot_tag": "ALQ_85487430", "sample": "S82", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.S82_R2.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R2_001.fastq.gz 6578949131 FASTQ S82_R2 unaligned CPTAC3 5fddbe95-7779-4c60-9511-8268a891232b c99733a7a8cc1f3fd4af06158b4a7679 {"aliquot_tag": "ALQ_85487430", "sample": "S82", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.transcriptome.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.transcriptome.gdc_realn.bam 8480167613 BAM transcriptome harmonized CPTAC3 39fde842-7f5e-4555-bfff-e2ab4d1075b1 4af383e5c6874e353734b4c6be834bd7 {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor"} -C3L-05571.RNA-Seq.transcriptome.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.transcriptome.gdc_realn.bam 7631895360 BAM transcriptome harmonized CPTAC3 68be3b22-0571-48fc-8422-1b2c8549c2d8 37ec67b31f201ecc02662b9421a32d81 {"aliquot_tag": "ALQ_85487430", "gdc_sample_type": "Primary Tumor"} -C3L-05571.WGS.N C3L-05571 UCEC WGS blood_normal CPT0273520002 CPT0273520002.WholeGenome.RP-2158.bam 25405372434 BAM aligned CPTAC3 76a015af-21d8-4fac-814f-82ab77d46413 c39376f063dae6ab7f3750335eaf1d4a {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal"} -C3L-05571.WGS.N.hg38 C3L-05571 UCEC WGS blood_normal CPT0273520002 2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wgs_gdc_realn.bam 72991842163 BAM harmonized CPTAC3 04fe5225-2758-4691-b709-934aa7656050 04eda63fbb1eb1e66d7ed63b3a4a93f0 {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal"} -C3L-05571.WGS.T C3L-05571 UCEC WGS tumor CPT0275270009 CPT0275270009.WholeGenome.RP-2158.bam 25934538376 BAM aligned CPTAC3 55d91490-d181-4c83-a94f-2738bb68cc17 4ec1624d6c4a0e4a51b2df67e7bab03d {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor"} -C3L-05571.WGS.T.hg38 C3L-05571 UCEC WGS tumor CPT0275270009 63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wgs_gdc_realn.bam 76185528314 BAM harmonized CPTAC3 0a1d1971-388c-472e-a6ac-c3608817ee7d c25ebbdffc502d7918284784112aaf03 {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor"} -C3L-05571.WXS.N C3L-05571 UCEC WXS blood_normal CPT0273520002 CPT0273520002.WholeExome.RP-1303.bam 20950292307 BAM aligned CPTAC3 395be3f7-e961-4046-9d16-7fad53804df5 8047280f8c519f485ff98fb746c892d6 {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal"} -C3L-05571.WXS.N.hg38 C3L-05571 UCEC WXS blood_normal CPT0273520002 2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wxs_gdc_realn.bam 28958627758 BAM harmonized CPTAC3 fa70a90c-6154-4ebb-ab94-a38428f80e4c f3a0d1315bc4d0daa0279fbcbf968146 {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal"} -C3L-05571.WXS.T C3L-05571 UCEC WXS tumor CPT0275270009 CPT0275270009.WholeExome.RP-1303.bam 20077678617 BAM aligned CPTAC3 8f9927db-71ec-4605-a7e3-fe7f77aa1437 8742ce9e6ec204e90056444fc7a561c9 {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor"} -C3L-05571.WXS.T.hg38 C3L-05571 UCEC WXS tumor CPT0275270009 63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wxs_gdc_realn.bam 28738175289 BAM harmonized CPTAC3 695ec101-5ecd-4552-ac22-a9b18ad41145 038874629eb81b3d6eaa935444dcc66e {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor"} -C3L-05574.RNA-Seq.chimeric.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.chimeric.gdc_realn.bam 295797938 BAM chimeric harmonized CPTAC3 c85623bb-820c-46eb-ae98-610bc798105b 656f903838ec80c10780d2a54a42c05d {"aliquot_tag": "ALQ_c62ceb9f", "gdc_sample_type": "Primary Tumor"} -C3L-05574.RNA-Seq.genomic.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.genomic.gdc_realn.bam 13984956492 BAM genomic harmonized CPTAC3 f3d026dc-348d-4996-8f9c-2d6e3061c951 163fbb36e69e3c42e031201a5df9b76b {"aliquot_tag": "ALQ_c62ceb9f", "gdc_sample_type": "Primary Tumor"} -C3L-05574.RNA-Seq.S55_R1.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R1_001.fastq.gz 8967582982 FASTQ S55_R1 unaligned CPTAC3 d22359eb-1963-4331-ac8e-5bfe21da379a 5a5189070c658feb4331aa6946b85df3 {"aliquot_tag": "ALQ_c62ceb9f", "sample": "S55", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05574.RNA-Seq.S55_R2.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R2_001.fastq.gz 9279915842 FASTQ S55_R2 unaligned CPTAC3 0824ef96-da24-4447-b004-870d0a8f0e09 0affd61dd280a8e64422140fa56c3111 {"aliquot_tag": "ALQ_c62ceb9f", "sample": "S55", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05574.RNA-Seq.transcriptome.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.transcriptome.gdc_realn.bam 8225640220 BAM transcriptome harmonized CPTAC3 314721fd-f0f0-48d0-abec-cd2871e4d2e3 133fbd299be3ec224d9e39901eae52a6 {"aliquot_tag": "ALQ_c62ceb9f", "gdc_sample_type": "Primary Tumor"} -C3L-05678.MethArray.Green.Tpb C3L-05678 AML Methylation_Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e984db26-9ec3-4b95-8958-f3cb8df408e1 80c99d6c79ae49ac209c379908874e17 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.MethArray.Red.Tpb C3L-05678 AML Methylation_Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 c8466f3f-4fb5-4e14-aa20-4861d84fd222 0e36cd84b9481a8ea5e2544006c2763c {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.miRNA-Seq.S18_L001_R1.Tpb C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L001_R1_001.unaln.bam 274806128 BAM S18_L001_R1 unaligned CPTAC3 b1136002-c557-45e4-81a2-9faf732a1046 9dcb236863d2102319af1a2bafa8c6cc {"aliquot_tag": "ALQ_3df145b8", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.miRNA-Seq.Tpb.hg38 C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 f639b523-173f-4dd9-b3d9-043e100eb72b_mirnaseq_gdc_realn.bam 300837228 BAM harmonized CPTAC3 2400d97f-36e5-4da0-a084-ed535fe38eec 50f78620783a3a50e46ce436ee41b906 {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.RNA-Seq.chimeric.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.chimeric.gdc_realn.bam 690338673 BAM chimeric harmonized CPTAC3 a1eb0896-ea46-431b-b682-c8f1ebd29607 6bf541e97651e4ebc2f401985e9ad360 {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.RNA-Seq.genomic.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.genomic.gdc_realn.bam 8240761627 BAM genomic harmonized CPTAC3 c16b1fb4-e579-48d7-8fbb-e73ad186cc01 ecacc8570fc5c2cdd19f059d68cb9d1f {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.RNA-Seq.S23_L006_R1.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3989940556 FASTQ S23_L006_R1 unaligned CPTAC3 45e5054f-8448-4886-81a1-e3f10f0e9655 1fda4b8646b4fdc8bcfe1bc107254093 {"aliquot_tag": "ALQ_3df145b8", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.RNA-Seq.S23_L006_R2.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4326609003 FASTQ S23_L006_R2 unaligned CPTAC3 bb536e99-1c65-411e-8e81-25175f6e5b5e b0dcded2ae560d618ef2c4f0dfbcd7a1 {"aliquot_tag": "ALQ_3df145b8", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.RNA-Seq.transcriptome.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.transcriptome.gdc_realn.bam 10180626358 BAM transcriptome harmonized CPTAC3 fab11fef-09b8-4fc1-8e87-be3572f2126d a4f93934d90ae42815ef7bd08b1756da {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.WGS.Nbc C3L-05678 AML WGS buccal_normal CPT0322820003 CPT0322820003.WholeGenome.RP-2158.bam 37551610573 BAM aligned CPTAC3 19ea11be-1597-4b4f-b0c8-0a895330b91b 9a28404cb857ff728b12da696a0e9b2a {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05678.WGS.Nbc.hg38 C3L-05678 AML WGS buccal_normal CPT0322820003 1e4181e8-2336-4118-b562-34e9dcd705c4_wgs_gdc_realn.bam 108424647124 BAM harmonized CPTAC3 42c8a39f-c216-4b9b-9397-0e17f6c3787f 96154389d76439cf179000af4c4a7bcc {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05678.WGS.Tpb C3L-05678 AML WGS tumor_peripheral_blood CPT0322890002 CPT0322890002.WholeGenome.RP-2158.bam 50765855054 BAM aligned CPTAC3 dbfba298-1cb2-4177-96e4-abf3fdc9cef9 7e788f86bdd848fcae8c71dd199ce0a0 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.WGS.Tpb.hg38 C3L-05678 AML WGS tumor_peripheral_blood CPT0322890002 45aba417-f9a2-4ff1-9f61-773f71e6f49d_wgs_gdc_realn.bam 145743222871 BAM harmonized CPTAC3 c9e37e32-d97e-4d6d-8ea9-843141103d21 b5587bdf192159434d08a7b805f378cd {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.WXS.Nbc C3L-05678 AML WXS buccal_normal CPT0322820003 CPT0322820003.WholeExome.RP-1303.bam 29575006880 BAM aligned CPTAC3 092e9b56-5df1-4fd9-9335-41e7310494a4 66182043d961504a2f86a3f8f5265669 {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05678.WXS.Nbc.hg38 C3L-05678 AML WXS buccal_normal CPT0322820003 1e4181e8-2336-4118-b562-34e9dcd705c4_wxs_gdc_realn.bam 40708797118 BAM harmonized CPTAC3 4a8cee33-0834-4a02-a43e-f3283b5334ec ab37797f32cf0391003eebf33d20f9e9 {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05678.WXS.Tpb C3L-05678 AML WXS tumor_peripheral_blood CPT0322890002 CPT0322890002.WholeExome.RP-1303.bam 19733411791 BAM aligned CPTAC3 95de5148-16e1-466f-a70d-18ae84888ed9 c61c5f436523ca70675a193700b76684 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05678.WXS.Tpb.hg38 C3L-05678 AML WXS tumor_peripheral_blood CPT0322890002 45aba417-f9a2-4ff1-9f61-773f71e6f49d_wxs_gdc_realn.bam 27372352224 BAM harmonized CPTAC3 cda1c1e0-3597-466d-9622-696ac0051602 badfd4cd79bae120b9dfab83fbd9ffe0 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05693.MethArray.Green.A C3L-05693 LSCC Methylation_Array tissue_normal CPT0284550006 204367490030_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9d3d131f-4256-4ff0-91c0-c4407cbbf318 277fe3cc547cbb5a9591a11dbb7d9685 {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.MethArray.Green.T C3L-05693 LSCC Methylation_Array tumor CPT0284540006 204372030139_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e84337d9-8ec1-4f41-b470-a17fe1e88e7f 9c32bfb886d93a8247e1230fcd570a36 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor"} -C3L-05693.MethArray.Red.A C3L-05693 LSCC Methylation_Array tissue_normal CPT0284550006 204367490030_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 ac3a8f4b-08a0-49ff-bdcb-06e712ea0447 dd8183f80aceca2d2f620516f6c458df {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.MethArray.Red.T C3L-05693 LSCC Methylation_Array tumor CPT0284540006 204372030139_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 1e3e0991-ad53-4f63-aae2-a52f66ca8051 884859ca3fc3a9cd844a9b5f930f5fcc {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor"} -C3L-05693.miRNA-Seq.A.hg38 C3L-05693 LSCC miRNA-Seq tissue_normal CPT0284550009 3fa78d4c-98cc-4a62-8c89-7c3ddd1b357c_mirnaseq_gdc_realn.bam 281220743 BAM harmonized CPTAC3 b302bb62-00ef-4705-bcc1-8f51b08efc43 9ab73f5e6d37e6599eb462f5c835b167 {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.miRNA-Seq.S34_L007_R1.T C3L-05693 LSCC miRNA-Seq tumor CPT0284540009 200224_UNC31-K00269_0267_AHC722BBXY_CATGGC_S34_L007_R1_001.unaln.bam 204402100 BAM S34_L007_R1 unaligned CPTAC3 8e258968-f076-44f4-899f-0578ade428b1 4a5cb6587b60da98e9d3beec350382ec {"aliquot_tag": "ALQ_cd0ac73a", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05693.miRNA-Seq.S7_L005_R1.A C3L-05693 LSCC miRNA-Seq tissue_normal CPT0284550009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAGATC_S7_L005_R1_001.unaln.bam 256275635 BAM S7_L005_R1 unaligned CPTAC3 30403d01-d93a-47b5-94a4-c5d8afbc1b11 620650e379e1a07565ae8c67f0ef02eb {"aliquot_tag": "ALQ_f06aee8a", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.miRNA-Seq.T.hg38 C3L-05693 LSCC miRNA-Seq tumor CPT0284540009 98b48f0e-f2aa-43c3-a71e-6ec7f41e6522_mirnaseq_gdc_realn.bam 225150733 BAM harmonized CPTAC3 0b139a09-16d8-457d-950c-34b4a9c69f20 93bdbfe79e5cb0490ecf963e1a802a26 {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor"} -C3L-05693.RNA-Seq.chimeric.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.chimeric.gdc_realn.bam 32660251 BAM chimeric harmonized CPTAC3 6a01110f-344c-4658-a4a9-8b7eb1789169 020d4c35fabdb07238c249299c11b38d {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.RNA-Seq.chimeric.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.chimeric.gdc_realn.bam 46387626 BAM chimeric harmonized CPTAC3 f195a644-ad9c-4c9c-bcae-fd15f2489712 31a88bae0d0e6a85fe8ae59cfa2e828b {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor"} -C3L-05693.RNA-Seq.genomic.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.genomic.gdc_realn.bam 7984122977 BAM genomic harmonized CPTAC3 15dc43a9-5f61-4034-b961-ebb5cf728615 bd03615914b258c572f998d65b9b18f8 {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.RNA-Seq.genomic.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.genomic.gdc_realn.bam 10643167533 BAM genomic harmonized CPTAC3 14298e9d-e32c-4ae5-94e1-1b5fd3645a76 e5ff159a19f072de81e08054c6550f6b {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor"} -C3L-05693.RNA-Seq.S2_L001_R1.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 5135433715 FASTQ S2_L001_R1 unaligned CPTAC3 72528177-da54-44e1-9b6d-3461942f09a3 697b17a8253cb873741c675b1b694011 {"aliquot_tag": "ALQ_cd0ac73a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05693.RNA-Seq.S2_L001_R2.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 5795875630 FASTQ S2_L001_R2 unaligned CPTAC3 fa73de66-06cd-4ffb-8d4e-a8bc87ac14db a4c0f2d1219e914638374725cbf49327 {"aliquot_tag": "ALQ_cd0ac73a", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05693.RNA-Seq.S7_L006_R1.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R1_001.fastq.gz 4007300060 FASTQ S7_L006_R1 unaligned CPTAC3 41d75bd4-c284-404f-9997-d77ab8824fde ef1e903535526ab7625e66824ebd3e36 {"aliquot_tag": "ALQ_f06aee8a", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.RNA-Seq.S7_L006_R2.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R2_001.fastq.gz 4306863459 FASTQ S7_L006_R2 unaligned CPTAC3 7e52534b-ef33-46e8-938e-4141a128b64d f1e048da2b169e544f4c8390176cbe56 {"aliquot_tag": "ALQ_f06aee8a", "sample": "S7", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.RNA-Seq.transcriptome.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.transcriptome.gdc_realn.bam 9929244537 BAM transcriptome harmonized CPTAC3 c6f902e0-34a1-484f-98cc-ae8b8c1f07ea 7bcad702f9144ff84658c0108bd41320 {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.RNA-Seq.transcriptome.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.transcriptome.gdc_realn.bam 14189626753 BAM transcriptome harmonized CPTAC3 1d1389d7-1bf4-4077-a982-9b8e2b7df0de c65c9384d407e0636059f959b31f200a {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor"} -C3L-05693.WGS.N C3L-05693 LSCC WGS blood_normal CPT0285840002 CPT0285840002.WholeGenome.RP-2158.bam 22708174541 BAM aligned CPTAC3 28f3e606-589c-40a5-a74d-0e40c054d11c 9e6f59b2332a465e3ec24b74b01d7af8 {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-05693.WGS.N.hg38 C3L-05693 LSCC WGS blood_normal CPT0285840002 75cf68ed-fd4e-4592-b25c-85c9263a2adb_wgs_gdc_realn.bam 66841189471 BAM harmonized CPTAC3 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 1ed33fd0af00da6317b9cb9cb8115540 {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-05693.WGS.T C3L-05693 LSCC WGS tumor CPT0284540006 CPT0284540006.WholeGenome.RP-2158.bam 22594747192 BAM aligned CPTAC3 37c561fd-6a83-419b-81cd-1832e1a8195e 1bfbc220f37c4e552fa7add212955de8 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor"} -C3L-05693.WGS.T.hg38 C3L-05693 LSCC WGS tumor CPT0284540006 7fde45f8-250d-45d1-827c-9f5313c7e614_wgs_gdc_realn.bam 63760329856 BAM harmonized CPTAC3 86f6ff64-28d1-4a9a-a636-7510c36b6fca 787407892ac61cba3b6983facf38a2d4 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor"} -C3L-05693.WXS.A C3L-05693 LSCC WXS tissue_normal CPT0284550006 CPT0284550006.WholeExome.RP-1303.bam 27792646981 BAM aligned CPTAC3 c0b47db4-4092-40a7-b001-b60b03ab8ea3 ecda53efeb376d52886528304fd8a3e3 {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.WXS.A.hg38 C3L-05693 LSCC WXS tissue_normal CPT0284550006 875435ae-1b7c-4aa4-9477-e46fb3dd7dc9_wxs_gdc_realn.bam 37622428460 BAM harmonized CPTAC3 4b8008c6-0d1b-4c2b-b523-c9349eeba536 f1e6ec86377f49e46ee604cf959e2905 {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-05693.WXS.N C3L-05693 LSCC WXS blood_normal CPT0285840002 CPT0285840002.WholeExome.RP-1303.bam 27629240514 BAM aligned CPTAC3 bc520d29-d5bd-4a67-900a-f4390d2b2a64 3a58e2a2cd700f2eca9115d04ef3f2e3 {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-05693.WXS.N.hg38 C3L-05693 LSCC WXS blood_normal CPT0285840002 75cf68ed-fd4e-4592-b25c-85c9263a2adb_wxs_gdc_realn.bam 37769208291 BAM harmonized CPTAC3 935ee27e-bb7f-4ba8-99b9-0fcfd5a0c65a 06f99a81b6a4bacbc157e12df6ca972b {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal"} -C3L-05693.WXS.T C3L-05693 LSCC WXS tumor CPT0284540006 CPT0284540006.WholeExome.RP-1303.bam 20527228697 BAM aligned CPTAC3 502c3c14-0dfd-4475-bb7e-e577a1d1fd54 e7e48e2db9f44f133c136524e17cb436 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor"} -C3L-05693.WXS.T.hg38 C3L-05693 LSCC WXS tumor CPT0284540006 7fde45f8-250d-45d1-827c-9f5313c7e614_wxs_gdc_realn.bam 28036240362 BAM harmonized CPTAC3 d5ac75aa-2173-40ba-aa89-0fc2ab777da8 51bb5054b93678173cdbe41572f1cad3 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor"} -C3L-05719.RNA-Seq.chimeric.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.chimeric.gdc_realn.bam 167330578 BAM chimeric harmonized CPTAC3 00070528-9440-4790-b35b-af5328ae624f 3d4214d3047e95205a717ac47362887b {"aliquot_tag": "ALQ_c146a35f", "gdc_sample_type": "Primary Tumor"} -C3L-05719.RNA-Seq.genomic.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.genomic.gdc_realn.bam 11377449704 BAM genomic harmonized CPTAC3 df662ce8-ffaf-4231-8ebd-beb12fa901e8 5a9d1b3fca660311a8b6142a0132a294 {"aliquot_tag": "ALQ_c146a35f", "gdc_sample_type": "Primary Tumor"} -C3L-05719.RNA-Seq.S84_R1.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R1_001.fastq.gz 5598981880 FASTQ S84_R1 unaligned CPTAC3 a23e02d5-cd7a-4771-977c-51c715534f71 e83c90e5b089b9048c426c11b265647d {"aliquot_tag": "ALQ_c146a35f", "sample": "S84", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05719.RNA-Seq.S84_R2.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R2_001.fastq.gz 5805631438 FASTQ S84_R2 unaligned CPTAC3 3522f3a0-b4e0-455c-a3b0-3c200008c843 712cfb0b18c6c1f49a8148b7f570ef08 {"aliquot_tag": "ALQ_c146a35f", "sample": "S84", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05719.RNA-Seq.transcriptome.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.transcriptome.gdc_realn.bam 6537590889 BAM transcriptome harmonized CPTAC3 8a3f152a-661b-4257-a142-dc50f6f4f4e3 47c6c054e4f785dc6dafa883109d88fd {"aliquot_tag": "ALQ_c146a35f", "gdc_sample_type": "Primary Tumor"} -C3L-05759.RNA-Seq.chimeric.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.chimeric.gdc_realn.bam 219596070 BAM chimeric harmonized CPTAC3 9054894e-25de-4414-a00d-7f0fd204ee29 de95f5388850b0716587f721f533874c {"aliquot_tag": "ALQ_dfa066ae", "gdc_sample_type": "Primary Tumor"} -C3L-05759.RNA-Seq.genomic.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.genomic.gdc_realn.bam 13355746485 BAM genomic harmonized CPTAC3 5af1d13e-1c6c-406c-9005-d07512a4d834 df386916467199c8511378687be6a443 {"aliquot_tag": "ALQ_dfa066ae", "gdc_sample_type": "Primary Tumor"} -C3L-05759.RNA-Seq.S76_R1.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R1_001.fastq.gz 8677954460 FASTQ S76_R1 unaligned CPTAC3 60c00409-af2c-470f-8482-dc225cfd9133 8ca4ad128d06e84080634cd58e890d6d {"aliquot_tag": "ALQ_dfa066ae", "sample": "S76", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05759.RNA-Seq.S76_R2.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R2_001.fastq.gz 8995857084 FASTQ S76_R2 unaligned CPTAC3 eb31ec00-8e43-45ff-a95d-816e4efd9974 a119decf5079ff7226caf5fcc939e056 {"aliquot_tag": "ALQ_dfa066ae", "sample": "S76", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05759.RNA-Seq.transcriptome.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.transcriptome.gdc_realn.bam 12903401938 BAM transcriptome harmonized CPTAC3 c213e434-9dd6-4b08-ab72-cd81750349da 2817ec25f4838c4b21ad409fc72fcf08 {"aliquot_tag": "ALQ_dfa066ae", "gdc_sample_type": "Primary Tumor"} -C3L-05761.RNA-Seq.chimeric.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.chimeric.gdc_realn.bam 81190401 BAM chimeric harmonized CPTAC3 8029818b-a6d1-4ec0-9491-a648df960df7 00220892e166aa40656c33faed94c41c {"aliquot_tag": "ALQ_5fc60d9c", "gdc_sample_type": "Primary Tumor"} -C3L-05761.RNA-Seq.genomic.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.genomic.gdc_realn.bam 6717730749 BAM genomic harmonized CPTAC3 8c2c40b3-6b3f-4aac-86b8-fb38ee842f45 2526cb17e53d8d98b65506545772cb0d {"aliquot_tag": "ALQ_5fc60d9c", "gdc_sample_type": "Primary Tumor"} -C3L-05761.RNA-Seq.S12_R1.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R1_001.fastq.gz 2960361213 FASTQ S12_R1 unaligned CPTAC3 68bff273-36c4-458a-9c71-6df9dd8e4595 176a3b8235f4c9c845022de8fb319940 {"aliquot_tag": "ALQ_5fc60d9c", "sample": "S12", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05761.RNA-Seq.S12_R2.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R2_001.fastq.gz 3104514210 FASTQ S12_R2 unaligned CPTAC3 4bc066af-2499-41b7-a25c-254529224972 d52366378631d2f2b01ffd4db2ecbc01 {"aliquot_tag": "ALQ_5fc60d9c", "sample": "S12", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05761.RNA-Seq.transcriptome.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.transcriptome.gdc_realn.bam 3180616412 BAM transcriptome harmonized CPTAC3 ad33171c-7889-4294-bf2c-d0194394f15f f879ce6d4f428be5608f00dbd607c74e {"aliquot_tag": "ALQ_5fc60d9c", "gdc_sample_type": "Primary Tumor"} -C3L-05763.RNA-Seq.chimeric.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.chimeric.gdc_realn.bam 137504785 BAM chimeric harmonized CPTAC3 0fb4160b-cb5e-40b7-a793-b19efe0a6a19 871c2abaefdfac672e6044d5584c7328 {"aliquot_tag": "ALQ_ee5a8d59", "gdc_sample_type": "Primary Tumor"} -C3L-05763.RNA-Seq.genomic.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.genomic.gdc_realn.bam 9596981630 BAM genomic harmonized CPTAC3 f32c2136-20d8-4ed2-84ba-38da795d2c28 d95ffcde380d5e4b5e185ced5296778a {"aliquot_tag": "ALQ_ee5a8d59", "gdc_sample_type": "Primary Tumor"} -C3L-05763.RNA-Seq.S21_R1.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R1_001.fastq.gz 5233557068 FASTQ S21_R1 unaligned CPTAC3 facce343-1069-418e-a147-21ce454ae89b a1b39d30ca817f339e1fcb2113f64429 {"aliquot_tag": "ALQ_ee5a8d59", "sample": "S21", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05763.RNA-Seq.S21_R2.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R2_001.fastq.gz 5396660473 FASTQ S21_R2 unaligned CPTAC3 5080671f-2a43-47ef-bb3a-eb50c5ce36d3 6c715b3ac94f59c21451b868c01d0261 {"aliquot_tag": "ALQ_ee5a8d59", "sample": "S21", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05763.RNA-Seq.transcriptome.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.transcriptome.gdc_realn.bam 8110124991 BAM transcriptome harmonized CPTAC3 9cd4cf0f-a587-405e-8105-5c46858d2d22 3811fcb355f611e0a2cf7b1d9dbfeef1 {"aliquot_tag": "ALQ_ee5a8d59", "gdc_sample_type": "Primary Tumor"} -C3L-05811.MethArray.Green.Tpb C3L-05811 AML Methylation_Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 5c8821fb-9334-43c9-a149-fa61d27e72a0 99d1955cb3ca819325195995b7457f1d {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.MethArray.Red.Tpb C3L-05811 AML Methylation_Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 00221a20-250a-4836-81a2-a451202e0711 3699403a3153f331c7199aabe4ba8bc9 {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.miRNA-Seq.S32_L002_R1.Tpb C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTTGTA_S32_L002_R1_001.unaln.bam 163702318 BAM S32_L002_R1 unaligned CPTAC3 19912d4a-0364-400f-96dc-c43cf3233c4d d2d3e9ddc388beefae7d4e70fafcfe2f {"aliquot_tag": "ALQ_319186b2", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.miRNA-Seq.Tpb.hg38 C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 5ac8604c-80da-4dea-a3ec-63a9ff6ab696_mirnaseq_gdc_realn.bam 185116772 BAM harmonized CPTAC3 c194f16d-24ee-4519-8d20-ce130ecea63e 9b4871b054f4cead4d886e3a5ef579cd {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.RNA-Seq.chimeric.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.chimeric.gdc_realn.bam 716108042 BAM chimeric harmonized CPTAC3 dfa0ac27-522d-4473-a20f-0f5241f368c7 8dd238f1eefd6616be1d0d230f21cfed {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.RNA-Seq.genomic.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.genomic.gdc_realn.bam 7336963723 BAM genomic harmonized CPTAC3 9be7dcb3-ca6a-4d18-9665-e8a0f0271070 e0e25edb7ba713fd28023aa44a25ecef {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.RNA-Seq.S8_L002_R1.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3684732251 FASTQ S8_L002_R1 unaligned CPTAC3 6cb1b5aa-f403-498d-9050-f332ff16ac92 39f9427dc032ec222492477d3e883a3b {"aliquot_tag": "ALQ_319186b2", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.RNA-Seq.S8_L002_R2.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3855866298 FASTQ S8_L002_R2 unaligned CPTAC3 af2c450c-3d51-4d43-ba60-0d8eb62b45bf 3915ab07b23d69bbf76283bba5f7293c {"aliquot_tag": "ALQ_319186b2", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.RNA-Seq.transcriptome.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.transcriptome.gdc_realn.bam 6607803379 BAM transcriptome harmonized CPTAC3 81b2b1c6-26c8-4ad2-baaf-bf0b7b630b91 e5b9579464d2de943ad0ac399b79cc99 {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.WGS.Nbc C3L-05811 AML WGS buccal_normal CPT0356860003 CPT0356860003.WholeGenome.RP-2158.bam 43865214372 BAM aligned CPTAC3 159a8cdc-8a9c-40db-893e-d5e2d4ebfa3d 227647f57fc0943ddba095566be7ed1f {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05811.WGS.Nbc.hg38 C3L-05811 AML WGS buccal_normal CPT0356860003 c711930c-7ca6-48e3-93c3-b3dd56557045_wgs_gdc_realn.bam 129587914122 BAM harmonized CPTAC3 181017af-d709-456e-ac61-d28f02aee849 5f7cc1418d53a0ac91c3af9e0f2af3c7 {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05811.WGS.Tpb C3L-05811 AML WGS tumor_peripheral_blood CPT0356770002 CPT0356770002.WholeGenome.RP-2158.bam 49051939501 BAM aligned CPTAC3 c6138ef5-0dca-406a-892e-f60f521a5a64 655c0d02c609075dd433cb388c4eac2b {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.WGS.Tpb.hg38 C3L-05811 AML WGS tumor_peripheral_blood CPT0356770002 e860a435-3ead-4be6-ab3d-8bb21f72ace8_wgs_gdc_realn.bam 142650707608 BAM harmonized CPTAC3 4871fd28-e3ed-4c5a-b4a3-1610aa2281c9 a79d69331ef43919f9e8f94ad2248853 {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.WXS.Nbc C3L-05811 AML WXS buccal_normal CPT0356860003 CPT0356860003.WholeExome.RP-1303.bam 21301774662 BAM aligned CPTAC3 dff4c51a-6123-4a6f-abae-dff2f12e1ef8 88aec7db1d2974ce12c1ba7687cc7914 {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05811.WXS.Nbc.hg38 C3L-05811 AML WXS buccal_normal CPT0356860003 c711930c-7ca6-48e3-93c3-b3dd56557045_wxs_gdc_realn.bam 28750136778 BAM harmonized CPTAC3 46925dff-cc17-4171-abf7-d449977beb8f 6b5b3f7bd4d0e7449d51561029106da6 {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05811.WXS.Tpb C3L-05811 AML WXS tumor_peripheral_blood CPT0356770002 CPT0356770002.WholeExome.RP-1303.bam 25918598554 BAM aligned CPTAC3 7fb6b556-8477-4c9b-a895-6c0513f94966 1092209188cf7df9de9ee128de98029d {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05811.WXS.Tpb.hg38 C3L-05811 AML WXS tumor_peripheral_blood CPT0356770002 e860a435-3ead-4be6-ab3d-8bb21f72ace8_wxs_gdc_realn.bam 35859996899 BAM harmonized CPTAC3 a55b5583-f9f9-4864-b605-0c5e79d270b6 6f5b968fe24016b9c0037aabbe5221a4 {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.MethArray.Green.Tpb C3L-05815 AML Methylation_Array tumor_peripheral_blood CPT0323050002 205987780094_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 2ecca0b9-956c-4d6d-bee8-890ea77cdf63 f8f48ccfa535746d750891d61f61ae43 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.MethArray.Red.Tpb C3L-05815 AML Methylation_Array tumor_peripheral_blood CPT0323050002 205987780094_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 9f50894f-848a-4160-b1c1-cddb9155596a bbd7343e4b946d3c88d6971d8bcb8cb2 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.miRNA-Seq.S17_L001_R1.Tpb C3L-05815 AML miRNA-Seq tumor_peripheral_blood CPT0323060002 220125_UNC32-K00270_0311_AHMNYYBBXY_TATAAT_S17_L001_R1_001.unaln.bam 268517372 BAM S17_L001_R1 unaligned CPTAC3 bfaaf5c7-5170-4ff3-9202-03cba09523c0 e4bba3c195ce7f72c99520291490e1d6 {"aliquot_tag": "ALQ_33c9ea64", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.miRNA-Seq.Tpb.hg38 C3L-05815 AML miRNA-Seq tumor_peripheral_blood CPT0323060002 09bd1f13-259e-41ad-af80-0b8d67d0f1a0_mirnaseq_gdc_realn.bam 292469975 BAM harmonized CPTAC3 5dd7d006-0f75-473c-b568-a28bb78e8f07 664d3c649264446440cab41e216b154c {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.RNA-Seq.chimeric.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.chimeric.gdc_realn.bam 814872793 BAM chimeric harmonized CPTAC3 892b16a0-49d8-49b2-95a0-787b98a3a0d1 611a087b13f43ce8cc28a07cf0f9d55c {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.RNA-Seq.genomic.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.genomic.gdc_realn.bam 7738469029 BAM genomic harmonized CPTAC3 d952e72d-3f8b-4bac-ab78-6c511c8179e7 1f6035f3a10b81422ef6d39051788385 {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.RNA-Seq.S24_L006_R1.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3863776464 FASTQ S24_L006_R1 unaligned CPTAC3 fb78f19a-d92a-4214-934c-10228f1eedab 6421d73d606a2dd61229d3ae62de35c1 {"aliquot_tag": "ALQ_33c9ea64", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.RNA-Seq.S24_L006_R2.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4160927650 FASTQ S24_L006_R2 unaligned CPTAC3 b97520ae-3d6d-45bd-8432-fe15b935ee85 4cb803e3de73ea0d4b4e37cf55a1b5f1 {"aliquot_tag": "ALQ_33c9ea64", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.RNA-Seq.transcriptome.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.transcriptome.gdc_realn.bam 7804805463 BAM transcriptome harmonized CPTAC3 99f87566-4890-4a1b-88ea-3d5cbcb0ed49 b2bd2099e21d4655250658608647296f {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.WGS.Nbc C3L-05815 AML WGS buccal_normal CPT0322970003 CPT0322970003.WholeGenome.RP-2158.bam 60729201718 BAM aligned CPTAC3 3325c4fd-7161-49bc-b40d-3e57f290ea99 72c37446e6ae829c50e1776cc4982fe3 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05815.WGS.Nbc.hg38 C3L-05815 AML WGS buccal_normal CPT0322970003 ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wgs_gdc_realn.bam 180660261361 BAM harmonized CPTAC3 16782800-b974-449d-a904-63e0450305c1 b8c7c7968f792271eb16d5cf21ce7969 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05815.WGS.Tpb C3L-05815 AML WGS tumor_peripheral_blood CPT0323050002 CPT0323050002.WholeGenome.RP-2158.bam 50095177296 BAM aligned CPTAC3 c8d7964b-476d-40d8-96f7-8f45b216442c 529042f9ea2b018c118af81f882a71b6 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.WGS.Tpb.hg38 C3L-05815 AML WGS tumor_peripheral_blood CPT0323050002 da70e406-4d9b-4969-85b4-6bdbfebb3baa_wgs_gdc_realn.bam 146047405514 BAM harmonized CPTAC3 92bcc4c9-4f9c-49e5-85bf-2f017b14c25a 13781d91b068ed906d13ab8a5a74fbac {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.WXS.Nbc C3L-05815 AML WXS buccal_normal CPT0322970003 CPT0322970003.WholeExome.RP-1303.bam 26668321021 BAM aligned CPTAC3 12a95782-f4de-4df2-bfcb-349da7cd00e2 68580918e1e1f92c8c718a4fc6e26bf7 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05815.WXS.Nbc.hg38 C3L-05815 AML WXS buccal_normal CPT0322970003 ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wxs_gdc_realn.bam 36411951793 BAM harmonized CPTAC3 b71ca46d-887c-4f93-8d39-d29a490b62fa 7fba893f62c686a9ad0701b150169c09 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05815.WXS.Tpb C3L-05815 AML WXS tumor_peripheral_blood CPT0323050002 CPT0323050002.WholeExome.RP-1303.bam 23099077216 BAM aligned CPTAC3 0d787110-84e7-4214-9ddc-396ca32f6468 ee0f3e3fadd21c6c31e3db9e470f5d13 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05815.WXS.Tpb.hg38 C3L-05815 AML WXS tumor_peripheral_blood CPT0323050002 da70e406-4d9b-4969-85b4-6bdbfebb3baa_wxs_gdc_realn.bam 32032868839 BAM harmonized CPTAC3 09f05d78-9636-4c06-b153-babf5efa44b4 d844e657184dce433ecce94870f94b58 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.MethArray.Green.Tpb C3L-05816 AML Methylation_Array tumor_peripheral_blood CPT0341500002 205705520128_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9a88da23-fa5e-45cc-b541-348491b3eb8d dab69e3e3ae7f961ce69ad545c091e2a {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.MethArray.Red.Tpb C3L-05816 AML Methylation_Array tumor_peripheral_blood CPT0341500002 205705520128_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 8de997b4-9b46-4c3b-b19e-65bf0c644723 909f5ac53f6f879ee8e0ac162bfe0501 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.miRNA-Seq.S3_L003_R1.Tpb C3L-05816 AML miRNA-Seq tumor_peripheral_blood CPT0341510002 220505_UNC32-K00270_0319_AHMV2KBBXY_CATTTT_S3_L003_R1_001.unaln.bam 262093107 BAM S3_L003_R1 unaligned CPTAC3 0f68a5d3-ea29-4a60-8047-ccf9434bbd56 e3aa0e7fb5d9904eb0f8f5cb1ada390e {"aliquot_tag": "ALQ_80d4bf69", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.miRNA-Seq.Tpb.hg38 C3L-05816 AML miRNA-Seq tumor_peripheral_blood CPT0341510002 ff6e4aa2-9fdb-4100-adb4-5c64640e4276_mirnaseq_gdc_realn.bam 288638340 BAM harmonized CPTAC3 801b8d14-e26e-4b58-906a-36164cead799 f7c28f6941b41d5c11c127491b1e9128 {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.RNA-Seq.chimeric.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.chimeric.gdc_realn.bam 702224929 BAM chimeric harmonized CPTAC3 cfd80439-539f-4540-8c1f-3c4b1d2abb4c ae7b7a1589f7279026afcb0557231c69 {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.RNA-Seq.genomic.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.genomic.gdc_realn.bam 8646661750 BAM genomic harmonized CPTAC3 6c1c7b96-66ce-44be-81f1-cd3101d1c12e e664fede11b3311f4e917a5212ba12cf {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.RNA-Seq.S31_L008_R1.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R1_001.fastq.gz 4019035536 FASTQ S31_L008_R1 unaligned CPTAC3 6530a944-65a6-445f-acd2-40167a8ebabb 02ba8f009763cf67cf090b7bfcac1256 {"aliquot_tag": "ALQ_80d4bf69", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.RNA-Seq.S31_L008_R2.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R2_001.fastq.gz 4355051207 FASTQ S31_L008_R2 unaligned CPTAC3 1a8aee28-cd05-4321-90b0-975466ae41ac ce088d5c01660b55ac473e507f310953 {"aliquot_tag": "ALQ_80d4bf69", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.RNA-Seq.transcriptome.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.transcriptome.gdc_realn.bam 6660362375 BAM transcriptome harmonized CPTAC3 919f846b-1423-4c5f-a07b-5b7220b17af7 9b332c840c7fa1053e417c2e5d60976e {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.WGS.Nbc C3L-05816 AML WGS buccal_normal CPT0341470002 CPT0341470002.WholeGenome.RP-2158.bam 46667120796 BAM aligned CPTAC3 db92010a-dec9-406d-a53b-13ba3defeba9 2951e0786295cd23d33d5207994f5df0 {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05816.WGS.Nbc.hg38 C3L-05816 AML WGS buccal_normal CPT0341470002 77a1298b-2bc1-4de8-ad94-21cf8f17995e_wgs_gdc_realn.bam 145005729848 BAM harmonized CPTAC3 0cc98eed-522d-4c11-927f-456208e184d8 29783aa0f187ae8643924ad2f2d43c2c {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05816.WGS.Tpb C3L-05816 AML WGS tumor_peripheral_blood CPT0341500002 CPT0341500002.WholeGenome.RP-2158.bam 41812881802 BAM aligned CPTAC3 ac39d56b-23e8-406e-939b-cbed41a6c19b 846b048d210d96f806f66f7229c11e12 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.WGS.Tpb.hg38 C3L-05816 AML WGS tumor_peripheral_blood CPT0341500002 b47d4df7-625d-4f96-a984-cc32fbfe3621_wgs_gdc_realn.bam 120323006253 BAM harmonized CPTAC3 56e0e868-c221-40e0-9757-a091ca137a68 d4b1b5240884ba6999a4ceb01587c2b9 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.WXS.Nbc C3L-05816 AML WXS buccal_normal CPT0341470002 CPT0341470002.WholeExome.RP-1303.bam 24084911537 BAM aligned CPTAC3 1393f6f9-47e2-4dbc-8894-d2d4e7928109 fa14485fb64d4f2a4f59c85a43bf4a25 {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05816.WXS.Nbc.hg38 C3L-05816 AML WXS buccal_normal CPT0341470002 77a1298b-2bc1-4de8-ad94-21cf8f17995e_wxs_gdc_realn.bam 33138596326 BAM harmonized CPTAC3 d96c9dee-d6ca-4abe-b1f5-df582acb9a32 9545d471bed51e2ad14b757553fcd9a3 {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05816.WXS.Tpb C3L-05816 AML WXS tumor_peripheral_blood CPT0341500002 CPT0341500002.WholeExome.RP-1303.bam 24840278431 BAM aligned CPTAC3 6497cdd6-a1ef-47e5-aa2d-f779538dbe82 c6fa1a1ed8c8bfda110d99a45c7d0698 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05816.WXS.Tpb.hg38 C3L-05816 AML WXS tumor_peripheral_blood CPT0341500002 b47d4df7-625d-4f96-a984-cc32fbfe3621_wxs_gdc_realn.bam 34293709629 BAM harmonized CPTAC3 66fbadaf-3853-46c1-8e14-0d1c6563d569 f7d2a995ecf516ae94389cd23a6e0936 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.MethArray.Green.Tpb C3L-05818 AML Methylation_Array tumor_peripheral_blood CPT0341750002 205705520128_R02C01_Grn.idat 13677887 IDAT Green NA CPTAC3 1f307bad-454f-4f71-9d1f-25251429cf54 725309efd2ff674c5619829a5a010fd6 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.MethArray.Red.Tpb C3L-05818 AML Methylation_Array tumor_peripheral_blood CPT0341750002 205705520128_R02C01_Red.idat 13677887 IDAT Red NA CPTAC3 e6f73c43-6b89-409c-b500-58f7a55bb32e 30223600db520ce11a066362079bc637 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.miRNA-Seq.S35_L002_R1.Tpb C3L-05818 AML miRNA-Seq tumor_peripheral_blood CPT0341760002 220125_UNC32-K00270_0311_AHMNYYBBXY_GCCAAT_S35_L002_R1_001.unaln.bam 324966105 BAM S35_L002_R1 unaligned CPTAC3 293d5ec7-fcf0-49e0-83f1-9ddd8d2dbe63 dc7c17fec4c72a834a9507e0a69a0170 {"aliquot_tag": "ALQ_7f3cc272", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.miRNA-Seq.Tpb.hg38 C3L-05818 AML miRNA-Seq tumor_peripheral_blood CPT0341760002 20769197-fd3e-4555-8505-8d306c84ec4c_mirnaseq_gdc_realn.bam 349602779 BAM harmonized CPTAC3 fbe96dbd-6212-4566-83bf-9208ca0ff7f4 e3c1a712158630dae3e1d5ca1dbc503c {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.RNA-Seq.chimeric.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.chimeric.gdc_realn.bam 921463062 BAM chimeric harmonized CPTAC3 1b374142-612f-497d-af94-4622106bc6c9 9545462b4d64956a5f00eb432e24e924 {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.RNA-Seq.genomic.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.genomic.gdc_realn.bam 9352436380 BAM genomic harmonized CPTAC3 f1e939d5-e92a-4648-947e-f0d153817fbc a742e4e1040ce40084913de8e1934979 {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.RNA-Seq.S30_L008_R1.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R1_001.fastq.gz 4451676793 FASTQ S30_L008_R1 unaligned CPTAC3 6692d0fd-d8c6-44be-8d98-642dd6a372be fe91152f48667f665256ed073c9a9674 {"aliquot_tag": "ALQ_7f3cc272", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.RNA-Seq.S30_L008_R2.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R2_001.fastq.gz 4910816086 FASTQ S30_L008_R2 unaligned CPTAC3 10684694-b8f8-4f79-9239-4b736dba2e74 33d5f83da157f18749256b07db2db30e {"aliquot_tag": "ALQ_7f3cc272", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.RNA-Seq.transcriptome.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.transcriptome.gdc_realn.bam 8860823205 BAM transcriptome harmonized CPTAC3 a6380a77-739b-4c13-9000-5800e70123e9 c30b67bdb3b7ad0a9d23581a05d979c2 {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.WGS.Nbc C3L-05818 AML WGS buccal_normal CPT0341720002 CPT0341720002.WholeGenome.RP-2158.bam 47674331431 BAM aligned CPTAC3 07d93477-605e-4142-9425-10c1fd3e75f7 216a7eb91c57038a8e8a82b770731ba8 {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05818.WGS.Nbc.hg38 C3L-05818 AML WGS buccal_normal CPT0341720002 1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wgs_gdc_realn.bam 142810189280 BAM harmonized CPTAC3 79f3bf76-08d2-40cc-a261-d303e5d51318 85735faee28b462d5369edd8b4fb7bda {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05818.WGS.Tpb C3L-05818 AML WGS tumor_peripheral_blood CPT0341750002 CPT0341750002.WholeGenome.RP-2158.bam 52201548894 BAM aligned CPTAC3 8aec49e1-b072-4d89-8642-caf602f4aea0 a63e8e5917fb0599bb570b6e0da2dabe {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.WGS.Tpb.hg38 C3L-05818 AML WGS tumor_peripheral_blood CPT0341750002 f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wgs_gdc_realn.bam 159950743711 BAM harmonized CPTAC3 33763a8a-1d39-4242-a314-022ebf386cde 1c496d0ff879c0e4fd7f1c80064bc363 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.WXS.Nbc C3L-05818 AML WXS buccal_normal CPT0341720002 CPT0341720002.WholeExome.RP-1303.bam 30048890719 BAM aligned CPTAC3 9cb033f9-5dd8-4992-94db-9dc6e6267e2c 3e7303f2ad4cf16ee61605185b50b035 {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05818.WXS.Nbc.hg38 C3L-05818 AML WXS buccal_normal CPT0341720002 1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wxs_gdc_realn.bam 41111750919 BAM harmonized CPTAC3 5730c453-4048-4c9e-b10a-06c63400babf f26ef93daab0b4c85ed37cbb9f0a797a {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05818.WXS.Tpb C3L-05818 AML WXS tumor_peripheral_blood CPT0341750002 CPT0341750002.WholeExome.RP-1303.bam 22320744456 BAM aligned CPTAC3 2d23e5e3-1101-4bd3-a656-899cecad8808 4c2a3c64f96c808b29fbfc9fb464d658 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05818.WXS.Tpb.hg38 C3L-05818 AML WXS tumor_peripheral_blood CPT0341750002 f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wxs_gdc_realn.bam 30807850895 BAM harmonized CPTAC3 805544ba-b2c2-4025-acae-b1a7a6c4110f 9e659890c0ae82154d6768f852212eaf {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.MethArray.Green.Tpb C3L-05819 AML Methylation_Array tumor_peripheral_blood CPT0341900002 205987780101_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 40d53142-6124-4deb-b37a-8475a419b29d b959d3f876ebc10cc11b898b4acb6c27 {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.MethArray.Red.Tpb C3L-05819 AML Methylation_Array tumor_peripheral_blood CPT0341900002 205987780101_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 474cb2d4-6e3d-43e7-96aa-13325b2b4149 c4eb458864a903fce92ccc53d17206b6 {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.miRNA-Seq.S29_L002_R1.Tpb C3L-05819 AML miRNA-Seq tumor_peripheral_blood CPT0341910002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGATC_S29_L002_R1_001.unaln.bam 208343040 BAM S29_L002_R1 unaligned CPTAC3 4f1e8895-5758-45a8-ad68-e1d6039c2b9a bc1455f13905769d664c4466ac3fc45e {"aliquot_tag": "ALQ_f7167f12", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.miRNA-Seq.Tpb.hg38 C3L-05819 AML miRNA-Seq tumor_peripheral_blood CPT0341910002 054f8a59-382c-4303-95f9-f405c58a0dae_mirnaseq_gdc_realn.bam 226042666 BAM harmonized CPTAC3 44a324d3-5e63-4861-a9e1-5fa537fb54f5 3783d31e665277b6b16248632a9a1ad3 {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.RNA-Seq.chimeric.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.chimeric.gdc_realn.bam 911622814 BAM chimeric harmonized CPTAC3 b1e3a119-d2c8-4a1f-a521-575d98a72675 5bbe0e2453b5c59f82399c22c840a9fe {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.RNA-Seq.genomic.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.genomic.gdc_realn.bam 9245352947 BAM genomic harmonized CPTAC3 7602646f-ab8e-410c-8db2-27ebda35c5e9 4a70d5d7491027d9c5be1d50074e89d7 {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.RNA-Seq.S1_L001_R1.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R1_001.fastq.gz 4611330437 FASTQ S1_L001_R1 unaligned CPTAC3 66199b6f-b71a-40a8-94a5-abbdb0b4af76 01a15df3a1b69127a78b5947ce42359c {"aliquot_tag": "ALQ_f7167f12", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.RNA-Seq.S1_L001_R2.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R2_001.fastq.gz 5054971938 FASTQ S1_L001_R2 unaligned CPTAC3 205ac3a6-e412-4af0-9756-1e35ba0fd4b3 57f749dc6f7a37f37992722ff83ac726 {"aliquot_tag": "ALQ_f7167f12", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.RNA-Seq.transcriptome.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.transcriptome.gdc_realn.bam 10087739230 BAM transcriptome harmonized CPTAC3 f9028cb1-8041-4cbf-bffd-3abfdec79d64 fa3f6caa06b0186a395c989abc2105fe {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.WGS.Nbc C3L-05819 AML WGS buccal_normal CPT0341870002 CPT0341870002.WholeGenome.RP-2158.bam 46715691034 BAM aligned CPTAC3 cadb58ae-ec45-4a24-9111-ca8fc6c5d70a b93649db1fddc5691a25d8e8014358a7 {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05819.WGS.Nbc.hg38 C3L-05819 AML WGS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wgs_gdc_realn.bam 137880656738 BAM harmonized CPTAC3 08e4d192-7b7d-4f5a-859f-7a804bca3ddf 3d3fe7b32d619d8f9b037e921a132a8a {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05819.WGS.Tpb C3L-05819 AML WGS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeGenome.RP-2158.bam 43495843547 BAM aligned CPTAC3 091cea99-fd2c-40d6-bc4b-c79347052637 93a4d65725d0431e4e787453b5a46aec {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.WGS.Tpb.hg38 C3L-05819 AML WGS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wgs_gdc_realn.bam 383286033134 BAM harmonized CPTAC3 c395cc56-30a7-4f7d-9a6c-33b84e36f2fc 06a024c709157b07ebac97dc2c816daa {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.WXS.Nbc C3L-05819 AML WXS buccal_normal CPT0341870002 CPT0341870002.WholeExome.RP-1303.bam 24953011849 BAM aligned CPTAC3 ce39e506-73dc-4f0c-b98d-bf42ebdeaa36 1b0773dea3c285af0a9c267705a2f4d1 {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05819.WXS.Nbc.hg38 C3L-05819 AML WXS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wxs_gdc_realn.bam 34395335551 BAM harmonized CPTAC3 08a8f112-a896-4435-bec0-4f7c3081d5c3 dfd5017f4273c810ea93f63b328c376c {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05819.WXS.Tpb C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeExome.RP-1303.bam 23019547119 BAM aligned CPTAC3 43ffbea2-a345-48ac-9b95-8105e9d69436 f0038c5a840d765dd3faeaed879ec71c {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05819.WXS.Tpb.hg38 C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wxs_gdc_realn.bam 32072259434 BAM harmonized CPTAC3 09d2c250-7d1b-4ce1-b341-f22b344cc4ec f4165b21c964967c75dc31859b3a1bf5 {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05848.MethArray.Green.T C3L-05848 UCEC Methylation_Array tumor CPT0288750009 204372030106_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0a065a8b-c02c-4b0b-b6a3-4e251a8c4ad4 9558bde51f725c60484b03d5cdb0df62 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor"} -C3L-05848.MethArray.Red.T C3L-05848 UCEC Methylation_Array tumor CPT0288750009 204372030106_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 b4c3d582-0793-4f9b-9ec4-897dba398e85 03be4c8aed9fac92cb60fb38ecf9d196 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor"} -C3L-05848.miRNA-Seq.S42_L008_R1.T C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAATCG_S42_L008_R1_001.unaln.bam 194402343 BAM S42_L008_R1 unaligned CPTAC3 eb251cc7-d9e3-4755-b1d5-f71ef8dbde73 1affa8e420f5b522ac6a6e461f39cff8 {"aliquot_tag": "ALQ_eabd3864", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05848.miRNA-Seq.T.hg38 C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 ac7e0cd3-76ef-4112-b477-b55de7dfbf35_mirnaseq_gdc_realn.bam 211461102 BAM harmonized CPTAC3 bf128935-81ed-4151-9e03-b97d6b46d5ed 843570f4183035b0cc87774adb9e44bc {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.chimeric.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.chimeric.gdc_realn.bam 37726313 BAM chimeric harmonized CPTAC3 f483a0c3-de96-45cd-a9ea-7953623f902b 760916b6ba281ae41b05272b6025e2e8 {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.chimeric.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.chimeric.gdc_realn.bam 226405297 BAM chimeric harmonized CPTAC3 e4c4926a-2aba-4524-9d5c-a02bcf8910b7 f3867521443870465c4a7c2f23d60efc {"aliquot_tag": "ALQ_3379d717", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.genomic.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.genomic.gdc_realn.bam 9754759588 BAM genomic harmonized CPTAC3 25072bd1-ed94-4ba4-a5cb-08578c8fe1ed a06a8e6656f397d1b3522e840a4a3a91 {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.genomic.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.genomic.gdc_realn.bam 11537591794 BAM genomic harmonized CPTAC3 c50b9c49-58ca-4dbb-8e76-9911e8c53aac 78611fe61649ebd35171e57b50d25e73 {"aliquot_tag": "ALQ_3379d717", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.S61_L007_R1.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R1_001.fastq.gz 4848554227 FASTQ S61_L007_R1 unaligned CPTAC3 a20970a5-0b49-4d46-b295-01241bc3bddf 0828dbbb1aab50ffe8838d8ead7e1ac5 {"aliquot_tag": "ALQ_eabd3864", "sample": "S61", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.S61_L007_R2.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R2_001.fastq.gz 5280894738 FASTQ S61_L007_R2 unaligned CPTAC3 a1e74ea4-3a49-425b-9958-e27affeb1742 5069041bffd07e6f5237160e69784be1 {"aliquot_tag": "ALQ_eabd3864", "sample": "S61", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.S76_R1.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R1_001.fastq.gz 6042484243 FASTQ S76_R1 unaligned CPTAC3 67f23630-5f13-40c2-be70-6a06108da2b8 1153b31a563449e62db0c14bfde5ac66 {"aliquot_tag": "ALQ_3379d717", "sample": "S76", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.S76_R2.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R2_001.fastq.gz 6285981923 FASTQ S76_R2 unaligned CPTAC3 c81c503d-88b0-4dbf-acbd-14d2c990ae0d 59593c04495adcd7251503e84062feae {"aliquot_tag": "ALQ_3379d717", "sample": "S76", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.transcriptome.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.transcriptome.gdc_realn.bam 11540069244 BAM transcriptome harmonized CPTAC3 909d20ce-8f5b-443a-a13c-c84439bfa734 aafd0718c5e4fa59efdd34c5ec5adf61 {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor"} -C3L-05848.RNA-Seq.transcriptome.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.transcriptome.gdc_realn.bam 5772694903 BAM transcriptome harmonized CPTAC3 2d8da558-6f7d-4c91-91f8-427b235d8ba5 4d508a820d2311a95a76984bc496991f {"aliquot_tag": "ALQ_3379d717", "gdc_sample_type": "Primary Tumor"} -C3L-05848.WGS.N C3L-05848 UCEC WGS blood_normal CPT0297030002 CPT0297030002.WholeGenome.RP-2158.bam 22123037304 BAM aligned CPTAC3 c46afebd-b2b5-4bd2-a465-59767618650c 3e4c03af9aef5dabc6070fd964d2c386 {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal"} -C3L-05848.WGS.N.hg38 C3L-05848 UCEC WGS blood_normal CPT0297030002 7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wgs_gdc_realn.bam 64633587295 BAM harmonized CPTAC3 b9d8dbc3-28d5-4a81-99c1-88246d743f56 9ac5302cfb94d79f29658c872cbcfc7f {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal"} -C3L-05848.WGS.T C3L-05848 UCEC WGS tumor CPT0288750009 CPT0288750009.WholeGenome.RP-2158.bam 25131159601 BAM aligned CPTAC3 e2914989-c6d8-44cf-8d69-6d01e9e1ad7b c2e022413d75838d5cf0dc479ca86ad7 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor"} -C3L-05848.WGS.T.hg38 C3L-05848 UCEC WGS tumor CPT0288750009 4371e677-059d-4c39-9ec3-fdbad29b064e_wgs_gdc_realn.bam 76555436982 BAM harmonized CPTAC3 11884c29-689e-4c70-adfb-9490351d8c07 664807c9efdafffacfcbc743ea87beaa {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor"} -C3L-05848.WXS.N C3L-05848 UCEC WXS blood_normal CPT0297030002 CPT0297030002.WholeExome.RP-1303.bam 26000564568 BAM aligned CPTAC3 912c08b8-6df4-4890-b53b-5015d80b1ef5 283b3e9fa7ce08fa2ea6e524a3b0a0b0 {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal"} -C3L-05848.WXS.N.hg38 C3L-05848 UCEC WXS blood_normal CPT0297030002 7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wxs_gdc_realn.bam 34683685743 BAM harmonized CPTAC3 78c6363c-4e2d-4136-ab9f-0b22d51bd0b8 b765391b3440f331cee9ef7931c4e96f {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal"} -C3L-05848.WXS.T C3L-05848 UCEC WXS tumor CPT0288750009 CPT0288750009.WholeExome.RP-1303.bam 18294568345 BAM aligned CPTAC3 e3d6b78f-b44b-4870-844a-fed430788176 a9b4d65b450a018d258a3c5177a3d1fa {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor"} -C3L-05848.WXS.T.hg38 C3L-05848 UCEC WXS tumor CPT0288750009 4371e677-059d-4c39-9ec3-fdbad29b064e_wxs_gdc_realn.bam 25894255424 BAM harmonized CPTAC3 bfcf60a4-25f0-45de-a0f9-456c18c0c8f8 e80f22e1a131c02a775172e3baa0cbed {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor"} -C3L-05849.MethArray.Green.T C3L-05849 UCEC Methylation_Array tumor CPT0288830009 204372030013_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d2d41196-9c85-492e-a2e9-595d316fdd9b 89aeece8ea279672a9d460793738fb93 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor"} -C3L-05849.MethArray.Red.T C3L-05849 UCEC Methylation_Array tumor CPT0288830009 204372030013_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 7192561d-dbe3-42f3-86e5-7a2079f29616 e62f8478b6d4cb9f0dce0b4f46f42491 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor"} -C3L-05849.miRNA-Seq.S43_L008_R1.T C3L-05849 UCEC miRNA-Seq tumor CPT0288830006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TACAGC_S43_L008_R1_001.unaln.bam 257617056 BAM S43_L008_R1 unaligned CPTAC3 12b38f1a-5c62-444b-a4fe-9275a44fdb56 8eca96a665344db3d776b693485a9a99 {"aliquot_tag": "ALQ_94ab7f11", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05849.miRNA-Seq.T.hg38 C3L-05849 UCEC miRNA-Seq tumor CPT0288830006 60d14046-a220-448e-9ae8-76ae2a990969_mirnaseq_gdc_realn.bam 280378364 BAM harmonized CPTAC3 bb8b77d2-9651-4f5e-a987-8e8fc9881125 794e2e8ef51c963582e2ddd5e0551756 {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.chimeric.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.chimeric.gdc_realn.bam 27044589 BAM chimeric harmonized CPTAC3 e48efae0-bf52-438d-9cb4-eb7c44422b30 0b5a1d5aa8979e9693a564c3b528f8d8 {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.chimeric.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.chimeric.gdc_realn.bam 329121970 BAM chimeric harmonized CPTAC3 84f9fcac-dcca-4b82-99f8-62089c66bb08 9d8eacaf569ee2c31a5840bd276245f3 {"aliquot_tag": "ALQ_b8ef36a2", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.genomic.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.genomic.gdc_realn.bam 7231940242 BAM genomic harmonized CPTAC3 89104d1c-b108-4b3c-899a-2ca382be6627 fa1a99b91d7175497b8383ae96bd540b {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.genomic.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.genomic.gdc_realn.bam 17333365278 BAM genomic harmonized CPTAC3 c355cfb3-282a-49c3-a1f4-fa30ea2d4d76 a8dd8183bcdebb141e02ab15c5d9290f {"aliquot_tag": "ALQ_b8ef36a2", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.S10_R1.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R1_001.fastq.gz 10346834136 FASTQ S10_R1 unaligned CPTAC3 51333577-b0d4-4b8d-b702-385e168932cf d02b2b75fec7dc619a3e17585f784350 {"aliquot_tag": "ALQ_b8ef36a2", "sample": "S10", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.S10_R2.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R2_001.fastq.gz 10578480756 FASTQ S10_R2 unaligned CPTAC3 efa680fe-8c6d-4c23-90d6-36694fce63a4 16ab50bf8bb22dee65a57b6c21628879 {"aliquot_tag": "ALQ_b8ef36a2", "sample": "S10", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.S62_L007_R1.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R1_001.fastq.gz 3516758807 FASTQ S62_L007_R1 unaligned CPTAC3 df1c6490-5106-4e02-945a-118b9cef06fb ad456ac0f22fa90061f3a38d3c26ce11 {"aliquot_tag": "ALQ_94ab7f11", "sample": "S62", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.S62_L007_R2.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R2_001.fastq.gz 3754319312 FASTQ S62_L007_R2 unaligned CPTAC3 5fc90fb6-c5e7-4c8f-b9b0-1f19f87f64d9 0d37912ac646333a2821ffba59e4dce8 {"aliquot_tag": "ALQ_94ab7f11", "sample": "S62", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.transcriptome.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.transcriptome.gdc_realn.bam 8627517266 BAM transcriptome harmonized CPTAC3 1260dace-8a81-4817-b9d1-315c05b53a31 5459812ad9b4ad1ec3a9c59f50732bdf {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor"} -C3L-05849.RNA-Seq.transcriptome.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.transcriptome.gdc_realn.bam 10532517647 BAM transcriptome harmonized CPTAC3 8fd56d1d-2efd-426d-8c9a-0c159a7f5d6e a746fb437ba8044538e3a45877efcf88 {"aliquot_tag": "ALQ_b8ef36a2", "gdc_sample_type": "Primary Tumor"} -C3L-05849.WGS.N C3L-05849 UCEC WGS blood_normal CPT0297010002 CPT0297010002.WholeGenome.RP-2158.bam 19678690999 BAM aligned CPTAC3 38a9d269-957d-4464-8438-72bcdf6f7846 47e36248c26a55d353b8cac4283feb75 {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal"} -C3L-05849.WGS.N.hg38 C3L-05849 UCEC WGS blood_normal CPT0297010002 138f530d-492b-4fc7-aba2-be1c9dc10174_wgs_gdc_realn.bam 54235420135 BAM harmonized CPTAC3 5aa3512e-d383-486a-ac23-d66db53f7388 44958cf06ffb92f5c819829a67b68e2d {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal"} -C3L-05849.WGS.T C3L-05849 UCEC WGS tumor CPT0288830009 CPT0288830009.WholeGenome.RP-2158.bam 23824195874 BAM aligned CPTAC3 195a1036-7fd1-4656-9b77-db40e0e725c8 4f86a0916f55c9bb9c42d0326d48b166 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor"} -C3L-05849.WGS.T.hg38 C3L-05849 UCEC WGS tumor CPT0288830009 6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wgs_gdc_realn.bam 70891852385 BAM harmonized CPTAC3 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e b6e99ff1f7255b44f9ee9f12b60e1dff {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor"} -C3L-05849.WXS.N C3L-05849 UCEC WXS blood_normal CPT0297010002 CPT0297010002.WholeExome.RP-1303.bam 20210526266 BAM aligned CPTAC3 bb7fbe45-592e-461e-b4e9-045c4f51fe35 05903dc2d9b27c8d2d26f399980accfd {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal"} -C3L-05849.WXS.N.hg38 C3L-05849 UCEC WXS blood_normal CPT0297010002 138f530d-492b-4fc7-aba2-be1c9dc10174_wxs_gdc_realn.bam 27934801827 BAM harmonized CPTAC3 51522438-df89-4bfe-ba34-8a260e48d23d 60fb910986a56f540b231de7ff8d463d {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal"} -C3L-05849.WXS.T C3L-05849 UCEC WXS tumor CPT0288830009 CPT0288830009.WholeExome.RP-1303.bam 16284714004 BAM aligned CPTAC3 8bfa03c5-2932-49af-bc0e-aae6bff93d23 3d78bb409b05bfedf6ce7489d1bf3832 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor"} -C3L-05849.WXS.T.hg38 C3L-05849 UCEC WXS tumor CPT0288830009 6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wxs_gdc_realn.bam 22839452402 BAM harmonized CPTAC3 4898b14f-d681-409a-8be3-7ceaa7a1207d 296ed39f516d294ed3f5d4125b224928 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor"} -C3L-05861.MethArray.Green.Tbm C3L-05861 AML Methylation_Array tumor_bone_marrow CPT0307200002 205555380130_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ad0aaf0e-55d4-41a8-82a8-228218d25af3 e90b96d5c49cc7cbba8a06f219b0041b {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.MethArray.Red.Tbm C3L-05861 AML Methylation_Array tumor_bone_marrow CPT0307200002 205555380130_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 d84754a8-9c68-45af-8cae-a6ca64806cbe 03b565395667ddbe0740c782e6b4e0c5 {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.miRNA-Seq.S6_L001_R1.Tbm C3L-05861 AML miRNA-Seq tumor_bone_marrow CPT0307210002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATGTCA_S6_L001_R1_001.unaln.bam 311283102 BAM S6_L001_R1 unaligned CPTAC3 289717ca-9254-4530-b0f1-fa7acf024570 997dc363ce2a56b6d4728498269f5040 {"aliquot_tag": "ALQ_7a4bb411", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.miRNA-Seq.Tbm.hg38 C3L-05861 AML miRNA-Seq tumor_bone_marrow CPT0307210002 45aa211d-ff02-4bd8-b7dd-ccb2c21843ba_mirnaseq_gdc_realn.bam 333579558 BAM harmonized CPTAC3 13aed3ca-56bc-420e-97eb-4a1a26be0586 60374fb14caf0bea7939c3858582688e {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.RNA-Seq.chimeric.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.chimeric.gdc_realn.bam 648535958 BAM chimeric harmonized CPTAC3 1dec8005-7a84-4c48-8d1b-f22811963836 74dabef2bdb633d7475efc4ca05f2012 {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.RNA-Seq.genomic.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.genomic.gdc_realn.bam 5927287767 BAM genomic harmonized CPTAC3 1107bdb6-dcd6-4339-bcd4-8e4565eae87f cb12838755aee2660cfe70b0a964f966 {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.RNA-Seq.S20_L005_R1.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R1_001.fastq.gz 3187800828 FASTQ S20_L005_R1 unaligned CPTAC3 074fab94-27aa-444e-b8c4-f06a6f3cdf3d 20c63a274eefbfb36bde2f2f2a5c0a7c {"aliquot_tag": "ALQ_7a4bb411", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.RNA-Seq.S20_L005_R2.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R2_001.fastq.gz 3400819138 FASTQ S20_L005_R2 unaligned CPTAC3 a95b940a-0080-4dab-9c33-14af4ecce0ec 7309dcbc031b62270976b5f3250161a0 {"aliquot_tag": "ALQ_7a4bb411", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.RNA-Seq.transcriptome.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.transcriptome.gdc_realn.bam 5543390834 BAM transcriptome harmonized CPTAC3 7aa9f6da-860c-47fe-9d49-48ad1251cb16 fd8039f365a9cb51c0026790d80a556d {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.WGS.Nbc C3L-05861 AML WGS buccal_normal CPT0307170003 CPT0307170003.WholeGenome.RP-2158.bam 44663044645 BAM aligned CPTAC3 7cd431da-14c5-41df-9d2a-c29a40a8209b ab7f61a4eb2f386a6e2b798cf2a0cf14 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05861.WGS.Nbc.hg38 C3L-05861 AML WGS buccal_normal CPT0307170003 149a73ab-2d7c-4436-9206-445a2c0a0679_wgs_gdc_realn.bam 130807377085 BAM harmonized CPTAC3 a45b486c-f931-4d85-a7db-ed57d173c8ba 8334256b882a998f842dba910ffa7427 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05861.WGS.Tbm C3L-05861 AML WGS tumor_bone_marrow CPT0307200002 CPT0307200002.WholeGenome.RP-2158.bam 47522595242 BAM aligned CPTAC3 be971e95-c787-4fbd-b148-0727428cedf4 999a8b39affbc479ad51eb9cdc295c3a {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.WGS.Tbm.hg38 C3L-05861 AML WGS tumor_bone_marrow CPT0307200002 99f098ca-38df-4e75-abb0-48d888a44848_wgs_gdc_realn.bam 143247750678 BAM harmonized CPTAC3 6e5f92dc-1661-4759-80cb-565482e59b19 674467e54c0beaaa2db42dd4936879a0 {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.WXS.Nbc C3L-05861 AML WXS buccal_normal CPT0307170003 CPT0307170003.WholeExome.RP-1303.bam 26737526911 BAM aligned CPTAC3 d4c34ff8-590d-4172-a359-0c23c40d98d2 4f4166bdeaa824eafb96b2281df69c75 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05861.WXS.Nbc.hg38 C3L-05861 AML WXS buccal_normal CPT0307170003 149a73ab-2d7c-4436-9206-445a2c0a0679_wxs_gdc_realn.bam 37481982889 BAM harmonized CPTAC3 c72348e7-a76b-4ff7-83b6-878245aea7a2 47ae7689d206ee8d80245bf253a43c73 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05861.WXS.Tbm C3L-05861 AML WXS tumor_bone_marrow CPT0307200002 CPT0307200002.WholeExome.RP-1303.bam 21868398723 BAM aligned CPTAC3 1b8f129c-18c3-492a-a659-89518511587d b121155f90ccc57ad6620a83d58fb52f {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05861.WXS.Tbm.hg38 C3L-05861 AML WXS tumor_bone_marrow CPT0307200002 99f098ca-38df-4e75-abb0-48d888a44848_wxs_gdc_realn.bam 30172099373 BAM harmonized CPTAC3 52cc8fbc-4b54-4783-a429-5ad192823cb0 eeaeb5b542fcbc4a2454341764b96d5b {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05862.MethArray.Green.Tpb C3L-05862 AML Methylation_Array tumor_peripheral_blood CPT0342270002 205705520145_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6ed2d966-56b4-46e2-8eb6-332c880d27f0 6d8b49c35002b29de4798b6d972d788a {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.MethArray.Red.Tpb C3L-05862 AML Methylation_Array tumor_peripheral_blood CPT0342270002 205705520145_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 276c813d-aa31-4da0-b57b-9ddaa5eb81dc dde38296936ef604c49253dcf4bf352b {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.miRNA-Seq.S24_L002_R1.Tpb C3L-05862 AML miRNA-Seq tumor_peripheral_blood CPT0342280002 220125_UNC32-K00270_0311_AHMNYYBBXY_ACTTGA_S24_L002_R1_001.unaln.bam 216629061 BAM S24_L002_R1 unaligned CPTAC3 0de6ee7e-b113-45a2-89d2-cb034bbaadf3 6aba474a4cf64d88f4b9e0cd3a9961e0 {"aliquot_tag": "ALQ_a129f73d", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.miRNA-Seq.Tpb.hg38 C3L-05862 AML miRNA-Seq tumor_peripheral_blood CPT0342280002 50059e20-3c64-43ee-a47d-29db1a1f3069_mirnaseq_gdc_realn.bam 232126947 BAM harmonized CPTAC3 2200976d-bd91-4363-bb94-fd2156acab13 0838e9ad70e06e631d7422cebd0ac8c6 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.RNA-Seq.chimeric.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.chimeric.gdc_realn.bam 634399063 BAM chimeric harmonized CPTAC3 214d7a29-195f-4c5e-8109-350fe65b7e04 0c2f4930d8e29e05abfe77d49386f543 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.RNA-Seq.genomic.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.genomic.gdc_realn.bam 7385049873 BAM genomic harmonized CPTAC3 d0686197-8c5b-47af-8622-8affef9d34a4 34cb9a9512578583f93d44ad04877ef2 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.RNA-Seq.S3_L001_R1.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R1_001.fastq.gz 3427394374 FASTQ S3_L001_R1 unaligned CPTAC3 30ae6399-c882-40b1-b4e9-ff2b6b57bb15 4b3ca5cd6d1b2b475b7828244b2f38d0 {"aliquot_tag": "ALQ_a129f73d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.RNA-Seq.S3_L001_R2.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R2_001.fastq.gz 3741545345 FASTQ S3_L001_R2 unaligned CPTAC3 16980c6a-440a-4af7-b908-4daa178678a3 e79fd79e86d70494c75b98faa09759da {"aliquot_tag": "ALQ_a129f73d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.RNA-Seq.transcriptome.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.transcriptome.gdc_realn.bam 5436257028 BAM transcriptome harmonized CPTAC3 cadbf231-7f94-4cf3-8fbf-b6162725b078 86fab154a0492c6710c81f00542c86f9 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.WGS.Nbc C3L-05862 AML WGS buccal_normal CPT0342240001 CPT0342240001.WholeGenome.RP-2158.bam 45841563474 BAM aligned CPTAC3 8556d413-3ad9-415a-9166-aa41a46a283e 8c27e3cab707c909a8d4d1aa67cd45a6 {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05862.WGS.Nbc.hg38 C3L-05862 AML WGS buccal_normal CPT0342240001 a16868eb-a995-49ef-b7de-f279cfbfdbd1_wgs_gdc_realn.bam 135719680184 BAM harmonized CPTAC3 cc820c53-59a0-4c02-ad49-62d668703147 fd6c7337886906af4a0406913c915979 {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05862.WGS.Tpb C3L-05862 AML WGS tumor_peripheral_blood CPT0342270002 CPT0342270002.WholeGenome.RP-2158.bam 44839633585 BAM aligned CPTAC3 6658985d-4542-4dc4-843e-71930d89299e 50d6c61035e773dda869a3ef3d63ba70 {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.WGS.Tpb.hg38 C3L-05862 AML WGS tumor_peripheral_blood CPT0342270002 3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wgs_gdc_realn.bam 133878947429 BAM harmonized CPTAC3 dd71b842-dcca-436e-bd57-2a4a47945ea1 6fb3f551560b853753b22acbde13acd3 {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.WXS.Nbc C3L-05862 AML WXS buccal_normal CPT0342240001 CPT0342240001.WholeExome.RP-1303.bam 31487124942 BAM aligned CPTAC3 9de7e781-1907-46d5-bcbf-799d39c22aa0 97986fdbbec04ced2ca160aec1ffade0 {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05862.WXS.Nbc.hg38 C3L-05862 AML WXS buccal_normal CPT0342240001 a16868eb-a995-49ef-b7de-f279cfbfdbd1_wxs_gdc_realn.bam 42852083239 BAM harmonized CPTAC3 59e58410-19e6-4330-b6c9-ebc6df712950 4a4083231791012ce5011d48aee7690e {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05862.WXS.Tpb C3L-05862 AML WXS tumor_peripheral_blood CPT0342270002 CPT0342270002.WholeExome.RP-1303.bam 29751552173 BAM aligned CPTAC3 56681293-b713-477c-93ee-38c00d3e5439 9cdd73fd707756af14b0e5590d008c75 {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05862.WXS.Tpb.hg38 C3L-05862 AML WXS tumor_peripheral_blood CPT0342270002 3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wxs_gdc_realn.bam 41309502516 BAM harmonized CPTAC3 f81b016a-7298-4e77-a7b1-5627c569d027 01c7bf1981729cf5072e3381eea108ed {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05865.MethArray.Green.Tbm C3L-05865 AML Methylation_Array tumor_bone_marrow CPT0449290002 205705520145_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9234ba3c-02b2-40cd-85b8-810eaae69233 2c4a582349d757fe045d622e60f2d7d8 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.MethArray.Red.Tbm C3L-05865 AML Methylation_Array tumor_bone_marrow CPT0449290002 205705520145_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 2fd3072c-e183-443b-a5c6-96ff5dcf81a0 d47611d38f8b0a5d4965893412d77e22 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.miRNA-Seq.S14_L003_R1.Tbm C3L-05865 AML miRNA-Seq tumor_bone_marrow CPT0449300002 220125_UNC32-K00270_0311_AHMNYYBBXY_GACGAC_S14_L003_R1_001.unaln.bam 241844446 BAM S14_L003_R1 unaligned CPTAC3 690ee6ad-4f6f-4550-be7f-7f503963bf83 00e7f324b339a4272d3ddd9e4bc6b8b0 {"aliquot_tag": "ALQ_3c63566a", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.miRNA-Seq.Tbm.hg38 C3L-05865 AML miRNA-Seq tumor_bone_marrow CPT0449300002 c0bc0518-c44c-423a-ae27-9747adf4e393_mirnaseq_gdc_realn.bam 269893894 BAM harmonized CPTAC3 68e92743-bb46-480e-8f2a-5409df845f58 4f068e0cc014ed010e97cd8892330e84 {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.RNA-Seq.chimeric.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.chimeric.gdc_realn.bam 578823785 BAM chimeric harmonized CPTAC3 782b930d-fa3d-405e-bf3c-48bc807f9882 e00752f968ecb0fa6257e6e45e7fe0b5 {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.RNA-Seq.genomic.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.genomic.gdc_realn.bam 7411104849 BAM genomic harmonized CPTAC3 93eddf2e-16f7-4056-890c-42b2ccd1278d 78a6fb89f46d9de923532723cc81c44f {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.RNA-Seq.S7_L002_R1.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3596489598 FASTQ S7_L002_R1 unaligned CPTAC3 f5fb6664-71c2-470c-b2f4-924a1a7f756b 9f525502f0de405e8dafc1678540eb6a {"aliquot_tag": "ALQ_3c63566a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.RNA-Seq.S7_L002_R2.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3925737100 FASTQ S7_L002_R2 unaligned CPTAC3 5ce9ed2b-d5f6-4f16-bf27-ecb3979e86b6 00dea86402c5eaca648b0a6208290956 {"aliquot_tag": "ALQ_3c63566a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.RNA-Seq.transcriptome.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.transcriptome.gdc_realn.bam 6952487426 BAM transcriptome harmonized CPTAC3 02473551-0aca-4892-a62a-9b390a5f30f9 bfb51c91b6a15ec466e9eebd594c4b86 {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.WGS.Nbc C3L-05865 AML WGS buccal_normal CPT0449260002 CPT0449260002.WholeGenome.RP-2158.bam 53830159842 BAM aligned CPTAC3 ed660cc7-9c95-46db-a7b6-e7f274793a56 c17fecb51fff26afb9998e8235ce3bcf {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05865.WGS.Nbc.hg38 C3L-05865 AML WGS buccal_normal CPT0449260002 8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wgs_gdc_realn.bam 173847752393 BAM harmonized CPTAC3 e8d3fe3c-d407-4468-9c8b-10842bb7b3e9 6a53c23b6599e455a78e8546870b562c {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05865.WGS.Tbm C3L-05865 AML WGS tumor_bone_marrow CPT0449290002 CPT0449290002.WholeGenome.RP-2158.bam 45892108482 BAM aligned CPTAC3 28475d39-0b20-4433-9fda-0554d54ede2f 375a69c20d026559261908faae62fa0e {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.WGS.Tbm.hg38 C3L-05865 AML WGS tumor_bone_marrow CPT0449290002 4201cf72-9bd9-43dd-8023-0c74842dca1e_wgs_gdc_realn.bam 393744807400 BAM harmonized CPTAC3 76bd6c51-c345-4984-b88a-869c51ebd318 5a903907e0a7a894fc370db1d163fa69 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.WXS.Nbc C3L-05865 AML WXS buccal_normal CPT0449260002 CPT0449260002.WholeExome.RP-1303.bam 28624204950 BAM aligned CPTAC3 3f46ea96-6ccd-455b-ab41-d509788b9c8e 81207d87be9c3f9ce7060b53e0ce5bdb {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05865.WXS.Nbc.hg38 C3L-05865 AML WXS buccal_normal CPT0449260002 8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wxs_gdc_realn.bam 39006539162 BAM harmonized CPTAC3 31fed2ee-eb65-40c7-b0ec-29b6473228db af8fe10f20ac18fd48a60503086a6607 {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05865.WXS.Tbm C3L-05865 AML WXS tumor_bone_marrow CPT0449290002 CPT0449290002.WholeExome.RP-1303.bam 29931341938 BAM aligned CPTAC3 364a81a0-ab13-4ee3-ad14-4d1c621cf40a 00a9684c629eddbe935a180c0e83664c {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05865.WXS.Tbm.hg38 C3L-05865 AML WXS tumor_bone_marrow CPT0449290002 4201cf72-9bd9-43dd-8023-0c74842dca1e_wxs_gdc_realn.bam 41740398964 BAM harmonized CPTAC3 f4e40196-62f9-4115-b08c-47b632673cd4 20720c9aa3e6a7d767bd5571737ae8a0 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.MethArray.Green.Tbm C3L-05866 AML Methylation_Array tumor_bone_marrow CPT0451240002 205987780161_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 aaf98a92-0716-473c-99a3-fa111599a496 e0d44034d9a0bae06ac076e2d6210bc0 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.MethArray.Red.Tbm C3L-05866 AML Methylation_Array tumor_bone_marrow CPT0451240002 205987780161_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 eef6c535-778d-4a7a-a7cc-109068c24e3d 2a011f09b49881238a0485ad620c3936 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.miRNA-Seq.S18_L003_R1.Tbm C3L-05866 AML miRNA-Seq tumor_bone_marrow CPT0451250002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L003_R1_001.unaln.bam 230634784 BAM S18_L003_R1 unaligned CPTAC3 1d1e4f08-7ff7-4831-aef5-94022915383f 58f186a66317661e5dbc66e7de62bb2e {"aliquot_tag": "ALQ_c09a4446", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.miRNA-Seq.Tbm.hg38 C3L-05866 AML miRNA-Seq tumor_bone_marrow CPT0451250002 2a68617d-cd63-4f03-929a-fd45679d0951_mirnaseq_gdc_realn.bam 257254197 BAM harmonized CPTAC3 464a1f5b-d52d-41b8-9ad2-0e8bf2e2c421 339d43b1bb5173d66994b8a420fe48a2 {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.RNA-Seq.chimeric.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.chimeric.gdc_realn.bam 808584297 BAM chimeric harmonized CPTAC3 aac4f54e-e7b7-4697-afb4-736841e7de35 6488afa5eeb0f93b5560ee6998be117a {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.RNA-Seq.genomic.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.genomic.gdc_realn.bam 8707946437 BAM genomic harmonized CPTAC3 18803820-5eaf-4248-b491-a699c6669520 825eaed2786c1a6314f341c80ca78094 {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.RNA-Seq.S12_L003_R1.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 4253065889 FASTQ S12_L003_R1 unaligned CPTAC3 2735ec95-31b1-4110-8556-01db4b0c338c 1cda48f7b97c3528e42e24b52ba633ac {"aliquot_tag": "ALQ_c09a4446", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.RNA-Seq.S12_L003_R2.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4647798540 FASTQ S12_L003_R2 unaligned CPTAC3 e2f0fe12-3f34-44cf-ae20-f306271c6117 4c2a1ee079ca86476e187d1f5a9695c5 {"aliquot_tag": "ALQ_c09a4446", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.RNA-Seq.transcriptome.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.transcriptome.gdc_realn.bam 7000010384 BAM transcriptome harmonized CPTAC3 4207d626-8e02-43cc-a98a-7a710c5ee20d 1da4db97f6c56f3c48d7ff9b8d527d1d {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.WGS.Nbc C3L-05866 AML WGS buccal_normal CPT0451210002 CPT0451210002.WholeGenome.RP-2158.bam 47738322998 BAM aligned CPTAC3 98b0bc7f-94df-4354-8178-0f971c172e70 a119642ec54632338654982223548a0e {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05866.WGS.Nbc.hg38 C3L-05866 AML WGS buccal_normal CPT0451210002 19892a7d-c8ad-42ac-879a-b59be77d2d74_wgs_gdc_realn.bam 140153318879 BAM harmonized CPTAC3 7f823e8f-f7ae-4cc6-a260-7e07843b534d 452dd5f9af97337ed394a0c0b8add9d4 {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05866.WGS.Tbm C3L-05866 AML WGS tumor_bone_marrow CPT0451240002 CPT0451240002.WholeGenome.RP-2158.bam 43651106968 BAM aligned CPTAC3 e5298e8c-8dc9-4b45-8742-28f3253748cb d2cc59c8ec5ed934d0e3f6c3e328f397 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.WGS.Tbm.hg38 C3L-05866 AML WGS tumor_bone_marrow CPT0451240002 ce3b7890-d847-48f9-9a91-32c20d88da64_wgs_gdc_realn.bam 131138287954 BAM harmonized CPTAC3 cabdf6e7-64e2-4429-87d0-7f95a3c9054f 6e30d7b3440aaefb7b9072c687042cee {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.WXS.Nbc C3L-05866 AML WXS buccal_normal CPT0451210002 CPT0451210002.WholeExome.RP-1303.bam 28472841764 BAM aligned CPTAC3 babe5e27-0c52-4d6d-aee4-cddb7e5d568a c450e6fa2547e2385af749060fcba3be {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05866.WXS.Nbc.hg38 C3L-05866 AML WXS buccal_normal CPT0451210002 19892a7d-c8ad-42ac-879a-b59be77d2d74_wxs_gdc_realn.bam 38675547780 BAM harmonized CPTAC3 a70ea14c-6e6b-46c1-b114-9c5ff9435f9d 3339246988c581a484c91a80c92d069f {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05866.WXS.Tbm C3L-05866 AML WXS tumor_bone_marrow CPT0451240002 CPT0451240002.WholeExome.RP-1303.bam 24467398848 BAM aligned CPTAC3 3d980cf3-af7a-4cc6-a27a-70a3e01c2a41 2d811b41469df90fff3e46d3d43386fb {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05866.WXS.Tbm.hg38 C3L-05866 AML WXS tumor_bone_marrow CPT0451240002 ce3b7890-d847-48f9-9a91-32c20d88da64_wxs_gdc_realn.bam 34067822652 BAM harmonized CPTAC3 e295b011-7109-42b0-acaf-10b6943fe584 09bba5944cb560ae05c1e305323ee981 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05867.MethArray.Green.Tpb C3L-05867 AML Methylation_Array tumor_peripheral_blood CPT0370770002 205707890036_R01C01_Grn.idat 13677891 IDAT Green NA CPTAC3 0916660b-a28e-42cd-9b25-d3b9798fbcbd f35ba9f2fbb596f7399a215e0287f904 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.MethArray.Red.Tpb C3L-05867 AML Methylation_Array tumor_peripheral_blood CPT0370770002 205707890036_R01C01_Red.idat 13677891 IDAT Red NA CPTAC3 d9e62da0-1f16-4fe6-a6af-8f4ac3a850a8 d3681620640a0660cc45d861985aaaf5 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.miRNA-Seq.S46_L003_R1.Tpb C3L-05867 AML miRNA-Seq tumor_peripheral_blood CPT0370840002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACCGG_S46_L003_R1_001.unaln.bam 246960590 BAM S46_L003_R1 unaligned CPTAC3 67c46c83-ccdb-48f4-a359-ff6ee94808eb 6e0cfe30eed01acd032f2b6cfc67c3e9 {"aliquot_tag": "ALQ_dc522f90", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.miRNA-Seq.Tpb.hg38 C3L-05867 AML miRNA-Seq tumor_peripheral_blood CPT0370840002 fbed7997-b09b-4b58-9f46-2fcf829866fa_mirnaseq_gdc_realn.bam 275036928 BAM harmonized CPTAC3 7ddeb82c-ba74-4055-a9eb-7ad45e9fc215 5d98d89409a507e597ef90b2f97661d7 {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.RNA-Seq.chimeric.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.chimeric.gdc_realn.bam 539928665 BAM chimeric harmonized CPTAC3 fb7dda22-a61e-4ead-8acf-dc4aafb852b1 caaf6b1672e942a47b6b76d115e802f6 {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.RNA-Seq.genomic.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.genomic.gdc_realn.bam 7851265611 BAM genomic harmonized CPTAC3 045dd7e3-1afc-45d3-b4eb-9768b2a1476d d4f4585e941e54126baede66e0e09827 {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.RNA-Seq.S21_L006_R1.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R1_001.fastq.gz 3888735161 FASTQ S21_L006_R1 unaligned CPTAC3 9f21ddc0-88a2-4e45-b9f7-326107a21ea6 97b184b2a03a08c0ef868644796cd3e9 {"aliquot_tag": "ALQ_dc522f90", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.RNA-Seq.S21_L006_R2.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R2_001.fastq.gz 4142355974 FASTQ S21_L006_R2 unaligned CPTAC3 c8eed0e7-ba2c-41c5-880e-6db790f15b69 3192e02515f05d5c5419ec806ed13b3d {"aliquot_tag": "ALQ_dc522f90", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.RNA-Seq.transcriptome.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.transcriptome.gdc_realn.bam 6966938454 BAM transcriptome harmonized CPTAC3 91f7ccfb-cc6d-4fe8-a431-c5dbacf6df10 fc06a2b8c3b92f04fa13ca1ca566684e {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.WGS.Tpb C3L-05867 AML WGS tumor_peripheral_blood CPT0370770002 CPT0370770002.WholeGenome.RP-2158.bam 49774987735 BAM aligned CPTAC3 b6f4f11c-e66c-4258-bd1c-720340c01195 1f2dd0e2eaf44df8798996eb55f7f12e {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.WGS.Tpb.hg38 C3L-05867 AML WGS tumor_peripheral_blood CPT0370770002 27e14fca-b7f7-43cd-9ffb-40bdb64c4eda_wgs_gdc_realn.bam 146166739322 BAM harmonized CPTAC3 2c55c877-04c4-4d6f-8029-7a108e397bd7 7d84467c93ce277b379e603ff0dd1ed9 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.WXS.Nbc C3L-05867 AML WXS buccal_normal CPT0370740002 CPT0370740002.WholeExome.RP-1303.bam 28258150421 BAM aligned CPTAC3 e804ee94-8c1c-4637-a3a1-085f3f6ad0fd a674f13102a0d25ddae2e19c3e0f8551 {"aliquot_tag": "ALQ_2d049d45", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05867.WXS.Nbc.hg38 C3L-05867 AML WXS buccal_normal CPT0370740002 4e0db17d-bd9e-405a-bb3f-f64d30b1941b_wxs_gdc_realn.bam 39048654846 BAM harmonized CPTAC3 e7f2cc73-9b6f-41b8-8e14-0c7e899a8792 2b92c60f98a881931d518c0e0b5bc170 {"aliquot_tag": "ALQ_2d049d45", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05867.WXS.Tpb C3L-05867 AML WXS tumor_peripheral_blood CPT0370770002 CPT0370770002.WholeExome.RP-1303.bam 31401698853 BAM aligned CPTAC3 0a1b5634-96bd-43db-9ca2-7429e819910d b49bbcbbf14292f838a01e924c703fd2 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05867.WXS.Tpb.hg38 C3L-05867 AML WXS tumor_peripheral_blood CPT0370770002 27e14fca-b7f7-43cd-9ffb-40bdb64c4eda_wxs_gdc_realn.bam 43486815455 BAM harmonized CPTAC3 0f03f041-f06d-44f0-945e-95304337b255 65f794cf7b764f38792037897090605e {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.MethArray.Green.Tpb C3L-05870 AML Methylation_Array tumor_peripheral_blood CPT0299480002 205987780101_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 d663f9a3-012f-47c0-aa6f-a61892bf78ac cc02f2060fad2e305bc1564ef96b1f19 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.MethArray.Red.Tpb C3L-05870 AML Methylation_Array tumor_peripheral_blood CPT0299480002 205987780101_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 10136479-b2c2-4c85-80f5-cf86ede3abef 4b7ea46b63976f186993782731d4e76f {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.miRNA-Seq.S8_L001_R1.Tpb C3L-05870 AML miRNA-Seq tumor_peripheral_blood CPT0299490002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L001_R1_001.unaln.bam 297322755 BAM S8_L001_R1 unaligned CPTAC3 f5528fac-2f34-4b34-8e83-cde930e6b002 27ad27303513f0d3a618fe1d5227fb78 {"aliquot_tag": "ALQ_c46968f8", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.miRNA-Seq.Tpb.hg38 C3L-05870 AML miRNA-Seq tumor_peripheral_blood CPT0299490002 a609b8be-75a6-453a-be64-310778d43e7d_mirnaseq_gdc_realn.bam 318834538 BAM harmonized CPTAC3 b4d9aa79-4961-49e7-839d-a1bb40b34c3b a05d3dafc66583c0b843df56aa253cd2 {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.RNA-Seq.chimeric.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.chimeric.gdc_realn.bam 565129914 BAM chimeric harmonized CPTAC3 1e7b47a1-1f1f-489f-8414-87a727adaac3 a996b44194ede67e50b9339d04df4e7d {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.RNA-Seq.genomic.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.genomic.gdc_realn.bam 7739050522 BAM genomic harmonized CPTAC3 37f9bad3-cef9-4e03-93c7-9e3a80e43255 d4f5ed4dfb71c1421494f0beb3a94754 {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.RNA-Seq.S15_L004_R1.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R1_001.fastq.gz 3687678146 FASTQ S15_L004_R1 unaligned CPTAC3 335a6971-98a0-48a8-9b22-caa10ab05757 3594aebbdeee63fe143c2e3399299a3c {"aliquot_tag": "ALQ_c46968f8", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.RNA-Seq.S15_L004_R2.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R2_001.fastq.gz 4012815314 FASTQ S15_L004_R2 unaligned CPTAC3 e7c743d4-69ee-489c-a2be-d7fb39114b7d e1db27f7047d52bf28f0acca9eeb78a1 {"aliquot_tag": "ALQ_c46968f8", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.RNA-Seq.transcriptome.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.transcriptome.gdc_realn.bam 10214087384 BAM transcriptome harmonized CPTAC3 523a71be-9394-4a34-b2b6-9e3e995cc9cc 6e50ada7c022c8e01af037b234992788 {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.WGS.Nbc C3L-05870 AML WGS buccal_normal CPT0299470001 CPT0299470001.WholeGenome.RP-2158.bam 51225930203 BAM aligned CPTAC3 9ce86255-067f-4c22-86e1-ae563b2b7768 5fd19c6452fb39d456e4ffbfc15e8ab2 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05870.WGS.Nbc.hg38 C3L-05870 AML WGS buccal_normal CPT0299470001 5c8aba49-4460-440f-9963-1500cb52785a_wgs_gdc_realn.bam 157609906711 BAM harmonized CPTAC3 08dc064e-d5a3-417c-ac3a-562b88329bc9 a1fa81cb6cd95c0650a1f85938f57019 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05870.WGS.Tpb C3L-05870 AML WGS tumor_peripheral_blood CPT0299480002 CPT0299480002.WholeGenome.RP-2158.bam 54163145795 BAM aligned CPTAC3 32b41085-afc7-4c04-a7ce-f0a8fee7b20d b2fd29049c45d5369022b6cf21e70ff0 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.WGS.Tpb.hg38 C3L-05870 AML WGS tumor_peripheral_blood CPT0299480002 4db8c894-62ec-43e6-8e5a-65abb040a80e_wgs_gdc_realn.bam 154828999780 BAM harmonized CPTAC3 1bd4235b-e682-4fa9-a261-cc25ffa7dd04 ef7ffdd6258b40e2884896c919cbe417 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.WXS.Nbc C3L-05870 AML WXS buccal_normal CPT0299470001 CPT0299470001.WholeExome.RP-1303.bam 28810346186 BAM aligned CPTAC3 674393d7-a8e2-4adf-8bb2-de6642c75817 76aeb3c8e6e27ca75a07cae366415913 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05870.WXS.Nbc.hg38 C3L-05870 AML WXS buccal_normal CPT0299470001 5c8aba49-4460-440f-9963-1500cb52785a_wxs_gdc_realn.bam 39685880868 BAM harmonized CPTAC3 dde74b6b-38ea-4791-9571-2174d6ac026f 48905840634f8fd8094f070bc7ee3b89 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05870.WXS.Tpb C3L-05870 AML WXS tumor_peripheral_blood CPT0299480002 CPT0299480002.WholeExome.RP-1303.bam 28751353934 BAM aligned CPTAC3 084ba04f-3465-40f2-8077-df152d385acd 0d1f3e1c9e3d078c7d3238b4b33e68e7 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05870.WXS.Tpb.hg38 C3L-05870 AML WXS tumor_peripheral_blood CPT0299480002 4db8c894-62ec-43e6-8e5a-65abb040a80e_wxs_gdc_realn.bam 39710169863 BAM harmonized CPTAC3 f808106f-0df8-4c92-8c51-506d15c9c8df 2a0007b790cd61f66a8104983b780516 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05872.MethArray.Green.Tbm C3L-05872 AML Methylation_Array tumor_bone_marrow CPT0299550002 205555380136_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e8ecbe8f-806c-4269-920c-27e7c7905eb5 27b08dfec4a02760cf87a6b351674f03 {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.MethArray.Red.Tbm C3L-05872 AML Methylation_Array tumor_bone_marrow CPT0299550002 205555380136_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 18778619-dfe7-4d1d-99ee-55d68abbbe31 1c0c710439b0184fb30eedc72eb59be4 {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.miRNA-Seq.S15_L001_R1.Tbm C3L-05872 AML miRNA-Seq tumor_bone_marrow CPT0299560002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTCCGC_S15_L001_R1_001.unaln.bam 221909396 BAM S15_L001_R1 unaligned CPTAC3 b2822218-dfb1-4495-a31a-5f484576aae7 6bdca808694cc12622a21f0560432e19 {"aliquot_tag": "ALQ_8d652c8c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.miRNA-Seq.Tbm.hg38 C3L-05872 AML miRNA-Seq tumor_bone_marrow CPT0299560002 684f8faa-1992-4291-bcec-8ef42606eb2b_mirnaseq_gdc_realn.bam 236635548 BAM harmonized CPTAC3 c31c3204-1bd8-470f-9556-67ccf7f1196f 22f2cbcbe63308daafbb1003d2036ed9 {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.RNA-Seq.chimeric.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.chimeric.gdc_realn.bam 90254959 BAM chimeric harmonized CPTAC3 51c401f6-065b-418e-99f4-148e7d7dc7b3 7efe5c701a76d645ca5e021089b968cb {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.RNA-Seq.genomic.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.genomic.gdc_realn.bam 7085368824 BAM genomic harmonized CPTAC3 22f6067a-8cbf-45f8-8844-2120baad708f 79cf9d0cbc681f0d9f880da2b2a9aeac {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.RNA-Seq.S15_L004_R1.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3590502666 FASTQ S15_L004_R1 unaligned CPTAC3 cf380f3c-caa7-43f8-bd19-f3f0fe913af7 17df40b59d7a08e29e07165ff1525871 {"aliquot_tag": "ALQ_8d652c8c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.RNA-Seq.S15_L004_R2.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 3840232436 FASTQ S15_L004_R2 unaligned CPTAC3 3d5c0aaf-5d4e-44d6-b9d1-6aa6ab92911e b38c7157e30a191ad4ee51d3630819e0 {"aliquot_tag": "ALQ_8d652c8c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.RNA-Seq.transcriptome.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.transcriptome.gdc_realn.bam 11348680422 BAM transcriptome harmonized CPTAC3 45c3cdde-b881-49e4-be7d-f2d040f291bf c2d993fd975b8660f956fd5a742bd818 {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.WGS.Nbc C3L-05872 AML WGS buccal_normal CPT0299540001 CPT0299540001.WholeGenome.RP-2158.bam 44668042889 BAM aligned CPTAC3 8d6c3dad-3d24-46c6-b2b0-b8148dd9029c 55107aadf6f456f5f27ef06e1fcf33c8 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05872.WGS.Nbc.hg38 C3L-05872 AML WGS buccal_normal CPT0299540001 344e5a94-a418-4792-9720-b4951cc25c7d_wgs_gdc_realn.bam 132424783599 BAM harmonized CPTAC3 64766b93-1829-4232-a292-eeaf37c967b9 513b998a04620925a1c9ee843ed7fd26 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05872.WGS.Tbm C3L-05872 AML WGS tumor_bone_marrow CPT0299550002 CPT0299550002.WholeGenome.RP-2158.bam 65145611148 BAM aligned CPTAC3 5f0dd23f-af53-473f-82d8-131bed8ce426 2c521f19fbd98eb9a0bd060e78967e6a {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.WGS.Tbm.hg38 C3L-05872 AML WGS tumor_bone_marrow CPT0299550002 d627fc82-0d74-405f-b841-0c0282413f6c_wgs_gdc_realn.bam 193350656603 BAM harmonized CPTAC3 571c510d-7fcc-40fd-8f1f-905375d8dfcc f3a8ee6bcd157cdbf2277317087498dc {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.WXS.Nbc C3L-05872 AML WXS buccal_normal CPT0299540001 CPT0299540001.WholeExome.RP-1303.bam 39958495658 BAM aligned CPTAC3 ce5dd2f4-8ecf-431f-bc06-813e32c5e4f6 25438bddf2548fc2eb5f04045d15a473 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05872.WXS.Nbc.hg38 C3L-05872 AML WXS buccal_normal CPT0299540001 344e5a94-a418-4792-9720-b4951cc25c7d_wxs_gdc_realn.bam 57205482721 BAM harmonized CPTAC3 2fec3d76-e6cd-476c-aede-afaae7821287 06d8ad300271ff98ba02905f3898bd57 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05872.WXS.Tbm C3L-05872 AML WXS tumor_bone_marrow CPT0299550002 CPT0299550002.WholeExome.RP-1303.bam 23800262582 BAM aligned CPTAC3 316742a5-5a01-4e37-b907-a12468c9c8ee 41134a1402477ab0a880e2f83f59ecac {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05872.WXS.Tbm.hg38 C3L-05872 AML WXS tumor_bone_marrow CPT0299550002 d627fc82-0d74-405f-b841-0c0282413f6c_wxs_gdc_realn.bam 33646048565 BAM harmonized CPTAC3 e10bf2cb-d23a-45d4-92a5-13fc8d54d6a4 b87ee7ec87ee5e825b349b4c17b01c09 {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.MethArray.Green.Tbm C3L-05874 AML Methylation_Array tumor_bone_marrow CPT0299880002 205555390164_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 473885b2-a3b0-4716-9f2b-6e94a8279a83 0445a21c3396fc5666a409f292ea6b36 {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.MethArray.Red.Tbm C3L-05874 AML Methylation_Array tumor_bone_marrow CPT0299880002 205555390164_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 6ee176b1-e8ae-4959-84d0-60244e41b02c f2cf08a05f2f41af75fbf4b236cdf8ad {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.miRNA-Seq.S46_L008_R1.Tbm C3L-05874 AML miRNA-Seq tumor_bone_marrow CPT0299900002 210331_UNC31-K00269_0297_AHKCFKBBXY_CCAACA_S46_L008_R1_001.unaln.bam 157455040 BAM S46_L008_R1 unaligned CPTAC3 6cc0eb5a-6bdd-46cc-9d0d-be6c0313bcb9 133e36e3ff1fade413eb4ed89ac56887 {"aliquot_tag": "ALQ_75e71957", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.miRNA-Seq.Tbm.hg38 C3L-05874 AML miRNA-Seq tumor_bone_marrow CPT0299900002 66fb0711-c5e3-4ee7-a844-dcae58352448_mirnaseq_gdc_realn.bam 165903159 BAM harmonized CPTAC3 313f7a94-9ade-4c79-86d3-1a482c278d2e 3f9b57f9c2e3e7d335f032a731cdab4d {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.RNA-Seq.chimeric.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.chimeric.gdc_realn.bam 90498124 BAM chimeric harmonized CPTAC3 6ecbe16e-ea94-4c20-8dcd-4fd2b1f734a7 834a2bb21bfac2924ef8bed4f4f57807 {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.RNA-Seq.genomic.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.genomic.gdc_realn.bam 7951765513 BAM genomic harmonized CPTAC3 627dc136-b579-4f70-8f16-0c27da00d7ad b9d5a49eb7b9fd0f9a5cfda55cef4729 {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.RNA-Seq.S32_L008_R1.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R1_001.fastq.gz 3895130520 FASTQ S32_L008_R1 unaligned CPTAC3 724820b5-bfc7-4b08-b081-3e10460c82b3 93270fca04acfc949828d906b6266215 {"aliquot_tag": "ALQ_75e71957", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.RNA-Seq.S32_L008_R2.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R2_001.fastq.gz 4072714684 FASTQ S32_L008_R2 unaligned CPTAC3 d76b214f-5d5f-4269-b983-96f4841a00ec a25d3a8458db3bd884ef5031c44a787e {"aliquot_tag": "ALQ_75e71957", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.RNA-Seq.transcriptome.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.transcriptome.gdc_realn.bam 7482243214 BAM transcriptome harmonized CPTAC3 534d3605-15c3-4a49-a878-ed77087e1b53 c2671d8eb08e0c398f63f8e6e1ed6d80 {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.WGS.Tbm C3L-05874 AML WGS tumor_bone_marrow CPT0299880002 CPT0299880002.WholeGenome.RP-2158.bam 50602071277 BAM aligned CPTAC3 0c5b5cca-6d59-42d8-8eb7-5379440ad7e6 12b45d1508dc3973de051ac1ada0b96b {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.WGS.Tbm.hg38 C3L-05874 AML WGS tumor_bone_marrow CPT0299880002 3e8f3526-12f3-44d1-8385-aacd38c7e4d5_wgs_gdc_realn.bam 147517587331 BAM harmonized CPTAC3 8acf8a3b-8004-409a-a389-dc34d3e47e05 c175c02cc3834568c4ff187e07c59522 {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.WXS.Nbc C3L-05874 AML WXS buccal_normal CPT0299870002 CPT0299870002.WholeExome.RP-1303.bam 28940847826 BAM aligned CPTAC3 028485ff-d935-43f4-a07c-3a9ed446fd23 2772fd41ffcddee068cee90628275d48 {"aliquot_tag": "ALQ_c9b16e2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05874.WXS.Nbc.hg38 C3L-05874 AML WXS buccal_normal CPT0299870002 8002982b-3c17-4e2d-8b6a-eaeb500b3445_wxs_gdc_realn.bam 38857621750 BAM harmonized CPTAC3 7b352b43-0631-44ca-89b8-7501b3514e1b fa326497f32158f5afe7426c9c44ac64 {"aliquot_tag": "ALQ_c9b16e2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05874.WXS.Tbm C3L-05874 AML WXS tumor_bone_marrow CPT0299880002 CPT0299880002.WholeExome.RP-1303.bam 26553985048 BAM aligned CPTAC3 c38af2a5-a196-4a6f-8d47-5b3f4a3e58f0 1e633c9d0658c1c5263f1f5351e6c032 {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05874.WXS.Tbm.hg38 C3L-05874 AML WXS tumor_bone_marrow CPT0299880002 3e8f3526-12f3-44d1-8385-aacd38c7e4d5_wxs_gdc_realn.bam 36548244942 BAM harmonized CPTAC3 2549eabf-0aad-43b3-995c-5b77eab0e11c 7a1f9c7114ca7a852fa85eff3f8b1b1e {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.MethArray.Green.Tbm C3L-05877 AML Methylation_Array tumor_bone_marrow CPT0300410002 205555390176_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e157f8f5-3784-44d7-a5a8-11ec582a405b 7273cbb5c1d2d3e94c48dd569b68a585 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.MethArray.Red.Tbm C3L-05877 AML Methylation_Array tumor_bone_marrow CPT0300410002 205555390176_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 fc79f61e-eafb-4880-8663-cb0e7f374a33 65183cf660f9d89b18e01af8d998a257 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.miRNA-Seq.S16_L001_R1.Tbm C3L-05877 AML miRNA-Seq tumor_bone_marrow CPT0300420002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGAAA_S16_L001_R1_001.unaln.bam 538259579 BAM S16_L001_R1 unaligned CPTAC3 d985a552-5580-4618-bf91-a8c489e822c3 dde7e98dbe2b5d47c676778ec543dc89 {"aliquot_tag": "ALQ_2e151352", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.miRNA-Seq.Tbm.hg38 C3L-05877 AML miRNA-Seq tumor_bone_marrow CPT0300420002 b145f9ab-8a81-443b-a1b2-47cafef2afc1_mirnaseq_gdc_realn.bam 598586366 BAM harmonized CPTAC3 3a3d70e1-02b0-4b5b-b620-bf1c1a42b9fb 10a0bf31b3382dec61a0d27392d86682 {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.RNA-Seq.chimeric.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.chimeric.gdc_realn.bam 95914183 BAM chimeric harmonized CPTAC3 c6b46c3b-f883-40e6-b36c-17799430d838 f460290a35bdca16a7e234c97e78aab7 {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.RNA-Seq.genomic.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.genomic.gdc_realn.bam 8493804982 BAM genomic harmonized CPTAC3 811187db-7a30-4df9-8bc0-063fd9718ba5 ed717222ca6dffc974ad8c80059f49b2 {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.RNA-Seq.S16_L004_R1.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4322192784 FASTQ S16_L004_R1 unaligned CPTAC3 0f08c20b-f789-48d8-9a67-35b47b3e3930 93226a1a4e570826af5be793a626af83 {"aliquot_tag": "ALQ_2e151352", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.RNA-Seq.S16_L004_R2.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 4568649533 FASTQ S16_L004_R2 unaligned CPTAC3 d80143d6-e2d1-4d5a-9c37-43b0e76a67c0 394665b594096905233756679677aff8 {"aliquot_tag": "ALQ_2e151352", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.RNA-Seq.transcriptome.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.transcriptome.gdc_realn.bam 11111923760 BAM transcriptome harmonized CPTAC3 97871066-6a83-4d6f-823f-17c4229419f8 3c6765f0176926c7e0d856a1072d1bab {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.WGS.Nbc C3L-05877 AML WGS buccal_normal CPT0300380003 CPT0300380003.WholeGenome.RP-2158.bam 73278017097 BAM aligned CPTAC3 392b0e5a-bfad-4790-83f1-b7d6c55783b0 4284588575c6f4fcffc6eef05e4637b2 {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05877.WGS.Nbc.hg38 C3L-05877 AML WGS buccal_normal CPT0300380003 ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wgs_gdc_realn.bam 237016842730 BAM harmonized CPTAC3 0dcc0454-f17b-4951-9437-ff2891e22852 d952a5e4dad47940118d15c236d64ed9 {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05877.WGS.Tbm C3L-05877 AML WGS tumor_bone_marrow CPT0300410002 CPT0300410002.WholeGenome.RP-2158.bam 45583207743 BAM aligned CPTAC3 e5b2f66c-ede3-4385-8747-3ff8dbfa7917 a39f6ae085feb0c1b9dff73140697a73 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.WGS.Tbm.hg38 C3L-05877 AML WGS tumor_bone_marrow CPT0300410002 96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wgs_gdc_realn.bam 130777638996 BAM harmonized CPTAC3 b158bbad-df67-4297-970f-9186bbc0a2bd db1c733e0bf65c1a1927d7303fbc8213 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.WXS.Nbc C3L-05877 AML WXS buccal_normal CPT0300380003 CPT0300380003.WholeExome.RP-1303.bam 23920575621 BAM aligned CPTAC3 02882d65-c171-4e21-aed0-44c7c82a6008 bff7edb67703573b0b77b9e5c6ec3f20 {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05877.WXS.Nbc.hg38 C3L-05877 AML WXS buccal_normal CPT0300380003 ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wxs_gdc_realn.bam 33591352662 BAM harmonized CPTAC3 ab66af5d-bf06-4441-ab13-d8941065731f ee5598b6bc871bc093356e595ad1704c {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05877.WXS.Tbm C3L-05877 AML WXS tumor_bone_marrow CPT0300410002 CPT0300410002.WholeExome.RP-1303.bam 25233163926 BAM aligned CPTAC3 f80cf357-9169-43ef-980d-4201e32386bd e2b258fd6c41f95da4e318faea47aef7 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05877.WXS.Tbm.hg38 C3L-05877 AML WXS tumor_bone_marrow CPT0300410002 96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wxs_gdc_realn.bam 34726300762 BAM harmonized CPTAC3 e37b97d2-8631-476e-9356-94c4ed5a2785 37924b3fc45cb0257b150ab5756e6a9d {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05880.MethArray.Green.Tbm C3L-05880 AML Methylation_Array tumor_bone_marrow CPT0343660002 205705520128_R05C01_Grn.idat 13677886 IDAT Green NA CPTAC3 db487083-b57b-44bd-863a-0c0afc2c8766 b80a5e94471a21e81a5ca16352d3e8be {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05880.MethArray.Red.Tbm C3L-05880 AML Methylation_Array tumor_bone_marrow CPT0343660002 205705520128_R05C01_Red.idat 13677886 IDAT Red NA CPTAC3 8a3bc2a3-a42f-4abc-bfba-1cc5fea9f305 811fb81758674757f75e43b0e4f18b33 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05880.miRNA-Seq.S41_L002_R1.Tpb C3L-05880 AML miRNA-Seq tumor_peripheral_blood CPT0343710002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAGCTT_S41_L002_R1_001.unaln.bam 249996798 BAM S41_L002_R1 unaligned CPTAC3 c0eb52b8-a6cf-47eb-aa2a-ceb62c501f44 1db5139b3fb96e3cea45b29e9c25b656 {"aliquot_tag": "ALQ_5a830f4b", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05880.miRNA-Seq.Tpb.hg38 C3L-05880 AML miRNA-Seq tumor_peripheral_blood CPT0343710002 e94c6558-3883-4094-92e7-ddf7d0c1be51_mirnaseq_gdc_realn.bam 274397735 BAM harmonized CPTAC3 e6ddd38d-286a-4403-9598-82592ed346bd 8d22ecc967fd8204e88f35ee29a195ab {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05880.RNA-Seq.chimeric.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.chimeric.gdc_realn.bam 562165773 BAM chimeric harmonized CPTAC3 3e030377-1cda-4d8a-8aec-02f2e2bceeca 765063a50b9d90ea286aa0c452027fad {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05880.RNA-Seq.genomic.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.genomic.gdc_realn.bam 8383882658 BAM genomic harmonized CPTAC3 58d498d3-e490-4480-80c7-e26b409670e0 851dd42e0c3136ca4c74031386f32ce8 {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05880.RNA-Seq.S4_L001_R1.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4087361180 FASTQ S4_L001_R1 unaligned CPTAC3 b341d34c-1191-4519-a1ff-d26521ec8bfd 8e103f659385c88c2c189ebbab40e313 {"aliquot_tag": "ALQ_5a830f4b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05880.RNA-Seq.S4_L001_R2.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4475045150 FASTQ S4_L001_R2 unaligned CPTAC3 cbbd3158-1f70-48a7-8e50-fda147c3d932 d372ecf04918026a82aa1d458bba9f0e {"aliquot_tag": "ALQ_5a830f4b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05880.RNA-Seq.transcriptome.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.transcriptome.gdc_realn.bam 8431042806 BAM transcriptome harmonized CPTAC3 6b51d865-9099-4514-920b-d0183b4755f6 5af10675be88a7026e513b61e4c64642 {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05880.WGS.Nbc C3L-05880 AML WGS buccal_normal CPT0343630001 CPT0343630001.WholeGenome.RP-2158.bam 45938618882 BAM aligned CPTAC3 e97060ef-1878-491a-8cbf-ec4cbaf6ea17 0385e20bb144f68f4f93172ed57a4233 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05880.WGS.Nbc.hg38 C3L-05880 AML WGS buccal_normal CPT0343630001 23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wgs_gdc_realn.bam 137911406384 BAM harmonized CPTAC3 a4668566-e4f8-46a6-af3b-1879baa49290 1639cd6f1c5e443f97f9fde0f0953380 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05880.WGS.Tbm C3L-05880 AML WGS tumor_bone_marrow CPT0343660002 CPT0343660002.WholeGenome.RP-2158.bam 43608083287 BAM aligned CPTAC3 5efce9a8-9fe1-4e06-b4cb-03cbb9316d37 706b725b75681bb85433f4f0345b3d38 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05880.WGS.Tbm.hg38 C3L-05880 AML WGS tumor_bone_marrow CPT0343660002 0ba49a29-a850-46e3-8379-1375fe76413d_wgs_gdc_realn.bam 132428942056 BAM harmonized CPTAC3 bf8ecffe-50b1-4149-9c3e-294b32a0e7a3 4699499528d125cd7c6b9d0f31e87b80 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05880.WXS.Nbc C3L-05880 AML WXS buccal_normal CPT0343630001 CPT0343630001.WholeExome.RP-1303.bam 28024817314 BAM aligned CPTAC3 93137e3b-52cb-4c56-96a9-022e90a326cd 34a6a2b7f567c2f7eb80e0ea0048a1d1 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05880.WXS.Nbc.hg38 C3L-05880 AML WXS buccal_normal CPT0343630001 23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wxs_gdc_realn.bam 111884501127 BAM harmonized CPTAC3 7d7b0de8-3536-4785-af8d-c428b67982f7 ff24cba4c7c5839a0e28da74d4bdfd27 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05880.WXS.Tbm C3L-05880 AML WXS tumor_bone_marrow CPT0343660002 CPT0343660002.WholeExome.RP-1303.bam 25354727637 BAM aligned CPTAC3 ade04ecf-df99-462e-9be4-483b2676fbd1 f4726ac141683ab7a3ba63e72c9abb90 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05880.WXS.Tbm.hg38 C3L-05880 AML WXS tumor_bone_marrow CPT0343660002 0ba49a29-a850-46e3-8379-1375fe76413d_wxs_gdc_realn.bam 35030256301 BAM harmonized CPTAC3 5f8c7af6-b9f4-4da1-a2a4-550334839d0c e803650a6b8db4dca6e7b8215ab4f3d3 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.MethArray.Green.Tbm C3L-05884 AML Methylation_Array tumor_bone_marrow CPT0416170002 205555390176_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 26062768-13ac-4540-bb9e-0770d6cd6e16 2eaa685a4e19e074ce676dd844dd0463 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.MethArray.Red.Tbm C3L-05884 AML Methylation_Array tumor_bone_marrow CPT0416170002 205555390176_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 554c6733-71c7-413e-8e0e-e41933d379fb 649eeceefe86fd80ce3d50d5dd1348fb {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.miRNA-Seq.S25_L005_R1.Tbm C3L-05884 AML miRNA-Seq tumor_bone_marrow CPT0410270002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAAAAG_S25_L005_R1_001.unaln.bam 259279400 BAM S25_L005_R1 unaligned CPTAC3 ece75779-0591-493a-a008-b0e44b5c8801 dd85e637834aa64e8c81ec1e55e113d5 {"aliquot_tag": "ALQ_98671268", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.miRNA-Seq.Tbm.hg38 C3L-05884 AML miRNA-Seq tumor_bone_marrow CPT0410270002 d266b58a-aaf7-483e-ba4c-f58f03fd16b1_mirnaseq_gdc_realn.bam 267008417 BAM harmonized CPTAC3 515661e9-b67c-40a9-9b07-60d7bb0691a6 6305f95994af72e9ecfc5157f24b245f {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.RNA-Seq.chimeric.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.chimeric.gdc_realn.bam 274586316 BAM chimeric harmonized CPTAC3 f7cd5186-e552-4888-9335-546fa57300a4 a7ef4ac5b4d89b84ad5c03ba7ba989d7 {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.RNA-Seq.genomic.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.genomic.gdc_realn.bam 8114158812 BAM genomic harmonized CPTAC3 ca2d8f30-3dd9-4088-a068-75cde7b04001 776f36bbff6c7587ad3f9d4dd30cc411 {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.RNA-Seq.S7_L002_R1.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3984639573 FASTQ S7_L002_R1 unaligned CPTAC3 68dcca5d-e353-4166-a863-6f0b745448c0 62939176466561a117f3d737114960c9 {"aliquot_tag": "ALQ_98671268", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.RNA-Seq.S7_L002_R2.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4205384530 FASTQ S7_L002_R2 unaligned CPTAC3 c8974040-12ad-4bea-901a-dfa36fb0c963 31c6a9ad23024234e290ae11e0bc287e {"aliquot_tag": "ALQ_98671268", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.RNA-Seq.transcriptome.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.transcriptome.gdc_realn.bam 9025722159 BAM transcriptome harmonized CPTAC3 5dd70628-a742-4ef2-a3c2-cd3db83a1719 da41fd6496c0e045f34361a2344b7f64 {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.WGS.Nbc C3L-05884 AML WGS buccal_normal CPT0410240001 CPT0410240001.WholeGenome.RP-2158.bam 52970046234 BAM aligned CPTAC3 ac4a2f44-2a60-414f-ad33-979c9b693cc7 b0804b58c63f738cb19d34a12869189a {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05884.WGS.Nbc.hg38 C3L-05884 AML WGS buccal_normal CPT0410240001 5cf52825-963d-462b-b1a5-d9f20ddd0070_wgs_gdc_realn.bam 157604592406 BAM harmonized CPTAC3 0872d590-4c7c-4270-879e-d60630f04982 36404f2eb4000f5b9375a5c9e24c54c0 {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05884.WGS.Tbm C3L-05884 AML WGS tumor_bone_marrow CPT0416170002 CPT0416170002.WholeGenome.RP-2158.bam 52579579721 BAM aligned CPTAC3 6eee2d82-7cd4-4b6e-8721-2b9296770ae1 8bf8b7629f17525205c23073950630f5 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.WGS.Tbm.hg38 C3L-05884 AML WGS tumor_bone_marrow CPT0416170002 7ef878e6-9ca3-40d7-9948-5af073b483f5_wgs_gdc_realn.bam 157014991953 BAM harmonized CPTAC3 766dc870-eef3-4df7-88ef-16e5b7950943 2b276f0b6b03b420e43e60d07a985677 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.WXS.Nbc C3L-05884 AML WXS buccal_normal CPT0410240001 CPT0410240001.WholeExome.RP-1303.bam 34539110903 BAM aligned CPTAC3 297d0f49-87d8-4d49-8009-ed43f5060936 73fadc7f34b6dc123efda1c52ceb0a82 {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05884.WXS.Nbc.hg38 C3L-05884 AML WXS buccal_normal CPT0410240001 5cf52825-963d-462b-b1a5-d9f20ddd0070_wxs_gdc_realn.bam 47895435122 BAM harmonized CPTAC3 16ae679b-5354-4ed5-abe4-a1b9d49a4ffc db1fc0abfbbe7525f93371a3100e82f0 {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05884.WXS.Tbm C3L-05884 AML WXS tumor_bone_marrow CPT0416170002 CPT0416170002.WholeExome.RP-1303.bam 21172512346 BAM aligned CPTAC3 fcd1719c-523a-4882-aee4-791ad923ae38 88553345bc46a1690edf868b29cb65a0 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05884.WXS.Tbm.hg38 C3L-05884 AML WXS tumor_bone_marrow CPT0416170002 7ef878e6-9ca3-40d7-9948-5af073b483f5_wxs_gdc_realn.bam 29114913369 BAM harmonized CPTAC3 53aff95c-11f2-407f-91cd-b594b0e4eed0 4312ad4496e9981125ad0c2b4b4afb5a {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.MethArray.Green.Tbm C3L-05887 AML Methylation_Array tumor_bone_marrow CPT0344020002 205555380130_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8fa05f50-37b2-4976-bd96-19e88168416b f18a9c399b4cdc09565411f9024a59d4 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.MethArray.Red.Tbm C3L-05887 AML Methylation_Array tumor_bone_marrow CPT0344020002 205555380130_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 6c628ba7-fbc9-497c-b103-7a150597a42b 6a439e29d6db2bebddc0b902ba327f17 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.miRNA-Seq.S18_L007_R1.Tbm C3L-05887 AML miRNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATCACG_S18_L007_R1_001.unaln.bam 193470977 BAM S18_L007_R1 unaligned CPTAC3 2d51281b-bc35-4ccb-bf8b-195d9ade30da 38860a635cf41ea7ec0ff2585fcd9278 {"aliquot_tag": "ALQ_f8e1521d", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.miRNA-Seq.Tbm.hg38 C3L-05887 AML miRNA-Seq tumor_bone_marrow CPT0344030002 9b149e38-d608-4826-a301-8b9a196f1afe_mirnaseq_gdc_realn.bam 216131313 BAM harmonized CPTAC3 90d8bca0-a5e8-4bf0-9fa1-caed8a536090 ce92fc22db59781456f3ff506bc7752a {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.RNA-Seq.chimeric.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.chimeric.gdc_realn.bam 177205301 BAM chimeric harmonized CPTAC3 9926bedc-dc36-4638-90a4-0128dd01e37a a4ca867a9073af76fbf8d96d29fd3702 {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.RNA-Seq.genomic.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.genomic.gdc_realn.bam 8302648692 BAM genomic harmonized CPTAC3 453d0933-20e4-49f2-bf23-58a8cee9ae66 85b144fe7c1e19a5b680913575270136 {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.RNA-Seq.S10_L003_R1.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R1_001.fastq.gz 4098545183 FASTQ S10_L003_R1 unaligned CPTAC3 69cc26b8-f6df-4410-85ad-9a0e45e0eed5 81b9de924ff1bb223452fff46a8e455a {"aliquot_tag": "ALQ_f8e1521d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.RNA-Seq.S10_L003_R2.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R2_001.fastq.gz 4435158903 FASTQ S10_L003_R2 unaligned CPTAC3 e5b69001-5416-4cab-895c-b6bb1a523790 10ac98d658134219ef95ef5fcd6135c7 {"aliquot_tag": "ALQ_f8e1521d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.RNA-Seq.transcriptome.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.transcriptome.gdc_realn.bam 8518621754 BAM transcriptome harmonized CPTAC3 dac03f68-48de-4c24-ab45-ef73ba5aa881 7056c2fc95917d8e65ac4f3215e25664 {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.WGS.Nbc C3L-05887 AML WGS buccal_normal CPT0343990003 CPT0343990003.WholeGenome.RP-2158.bam 59829704757 BAM aligned CPTAC3 aece0829-7aa7-4283-b47a-97f18923d4fb d04ce4119c61d4eb5d27013e08132225 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05887.WGS.Nbc.hg38 C3L-05887 AML WGS buccal_normal CPT0343990003 e28e0b54-03a7-4cfb-b77b-447b8646961a_wgs_gdc_realn.bam 187159088869 BAM harmonized CPTAC3 dbebe5b3-751c-418b-92ca-7a2e95782be0 5065635ce4c5a9e009ecbc138cb83159 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05887.WGS.Tbm C3L-05887 AML WGS tumor_bone_marrow CPT0344020002 CPT0344020002.WholeGenome.RP-2158.bam 55879978478 BAM aligned CPTAC3 c5d7acde-7e40-4e56-a7b5-9604704a1b6e db6f4bc762d8fa375f9607dcd90de010 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.WGS.Tbm.hg38 C3L-05887 AML WGS tumor_bone_marrow CPT0344020002 236e12c7-1408-4460-acaa-69762ebc953a_wgs_gdc_realn.bam 155566422748 BAM harmonized CPTAC3 4e4e94e7-8082-469d-a621-8f506bead92f af151ea252421799aa36a264200d5f30 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.WXS.Nbc C3L-05887 AML WXS buccal_normal CPT0343990003 CPT0343990003.WholeExome.RP-1303.bam 24906983293 BAM aligned CPTAC3 6549b58f-7999-48bd-a67f-44a333f9d559 2a231e89c8745bcb249d1bdf4a9ede82 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05887.WXS.Nbc.hg38 C3L-05887 AML WXS buccal_normal CPT0343990003 e28e0b54-03a7-4cfb-b77b-447b8646961a_wxs_gdc_realn.bam 34770032401 BAM harmonized CPTAC3 b508e0fe-9f8a-4166-9bc8-70df9fac94df 2264cd40a23b775f56368219abfa7a67 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05887.WXS.Tbm C3L-05887 AML WXS tumor_bone_marrow CPT0344020002 CPT0344020002.WholeExome.RP-1303.bam 23595760543 BAM aligned CPTAC3 d6906cac-a265-45e7-99ef-fda4278f7596 c9f3392331ddc3c0027ed0684f3cfe86 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05887.WXS.Tbm.hg38 C3L-05887 AML WXS tumor_bone_marrow CPT0344020002 236e12c7-1408-4460-acaa-69762ebc953a_wxs_gdc_realn.bam 32462973279 BAM harmonized CPTAC3 f7cf2849-de68-4c42-bb9c-30885885427c 133bc384fe440b5811ec19a1bffb3138 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.MethArray.Green.Tbm C3L-05888 AML Methylation_Array tumor_bone_marrow CPT0344130001 205555390118_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 93548594-151d-4fe5-a200-5d4dbaa21bc1 52d275c4d6579b22cc0f27e06d3b01f0 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.MethArray.Red.Tbm C3L-05888 AML Methylation_Array tumor_bone_marrow CPT0344130001 205555390118_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 c5dcb4df-4818-4a13-9820-a4e03d5eb965 ca748f441f98f11646ecf22b88eb3190 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.miRNA-Seq.S21_L007_R1.Tbm C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGATGT_S21_L007_R1_001.unaln.bam 107475845 BAM S21_L007_R1 unaligned CPTAC3 a9f21010-4951-4bcd-a908-3fa8d3372c06 4c1993b198ba4c93a1934fb022c4aee8 {"aliquot_tag": "ALQ_819d5da8", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.miRNA-Seq.S27_L003_R1.Tbm C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 210817_UNC31-K00269_0302_AHLCTHBBXY_CGATGT_S27_L003_R1_001.unaln.bam 47475062 BAM S27_L003_R1 unaligned CPTAC3 7ae09ad9-91b7-4dca-96bb-73a58d23a637 7d507f10b8460b2df0c9cf931bf2a363 {"aliquot_tag": "ALQ_819d5da8", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.miRNA-Seq.Tbm.hg38 C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 9f6aa56e-d054-4626-ab28-d613470fb235_mirnaseq_gdc_realn.bam 176929130 BAM harmonized CPTAC3 5b9cb0d5-33f9-4e82-bbbc-54262cf588db f1444b2ccd0d6451d9c36577d96f3e12 {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.RNA-Seq.chimeric.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.chimeric.gdc_realn.bam 98687771 BAM chimeric harmonized CPTAC3 7b2e37dc-8e9b-4dc3-bb36-64b15babf26f e3f627078fc44999538fa3ebb1e02036 {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.RNA-Seq.genomic.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.genomic.gdc_realn.bam 9110093573 BAM genomic harmonized CPTAC3 b33c67d4-8d2c-44c8-bcd4-b7bafe7ffc5c ea90f2ba15f800db972acea58ff404cc {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.RNA-Seq.S12_L003_R1.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R1_001.fastq.gz 4554756978 FASTQ S12_L003_R1 unaligned CPTAC3 7cdc741d-0a64-4e81-938a-cc4297d7cc3d 4d9f4f4c5d6fd2933764191b6e9d0b46 {"aliquot_tag": "ALQ_819d5da8", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.RNA-Seq.S12_L003_R2.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R2_001.fastq.gz 4720793096 FASTQ S12_L003_R2 unaligned CPTAC3 0b44d08b-a40e-42d2-a682-ace4760bc581 4c93ac8f4e41ad86da0c6d0966149b21 {"aliquot_tag": "ALQ_819d5da8", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.RNA-Seq.transcriptome.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.transcriptome.gdc_realn.bam 10909949892 BAM transcriptome harmonized CPTAC3 e8c92412-d60d-4cc5-9510-712b95caa8eb 22090b72327e81cadf8159c9360c5c1a {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.WGS.Nbc C3L-05888 AML WGS buccal_normal CPT0344100003 CPT0344100003.WholeGenome.RP-2158.bam 56984619726 BAM aligned CPTAC3 b4903282-c4db-474e-9110-45a35b5b4b7c 85fc05e6e39ef5b064f5bedcab5e33fe {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05888.WGS.Nbc.hg38 C3L-05888 AML WGS buccal_normal CPT0344100003 5aa5467c-5b5b-4942-9207-8575275e8d48_wgs_gdc_realn.bam 189300363263 BAM harmonized CPTAC3 6c758b3c-100a-4699-abc1-60fea47b26ce f9b3faf73e0fd62cd286dd42f5c593bc {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05888.WGS.Tbm C3L-05888 AML WGS tumor_bone_marrow CPT0344130001 CPT0344130001.WholeGenome.RP-2158.bam 46138978226 BAM aligned CPTAC3 3b2c9000-4fbf-4f8f-be46-ddf9b76855aa 6306b769541ca36162c8e78e2c964931 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.WGS.Tbm.hg38 C3L-05888 AML WGS tumor_bone_marrow CPT0344130001 8fbfc62b-debd-49af-a0d1-0d1f015896af_wgs_gdc_realn.bam 134774007299 BAM harmonized CPTAC3 1d979e9f-8895-43ac-b026-82da5d317b60 c7c92377aae5fb976e6e6286dbf8d09b {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.WXS.Nbc C3L-05888 AML WXS buccal_normal CPT0344100003 CPT0344100003.WholeExome.RP-1303.bam 22845821003 BAM aligned CPTAC3 4f3dd907-1eb6-4fb6-8186-8b580bd4b3ce 163f6b5e42d9142691bd94d1d92459fe {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05888.WXS.Nbc.hg38 C3L-05888 AML WXS buccal_normal CPT0344100003 5aa5467c-5b5b-4942-9207-8575275e8d48_wxs_gdc_realn.bam 32066544877 BAM harmonized CPTAC3 e5726129-0842-47aa-a1c1-7b866092f086 c8032247874bbc98e5b4fe75810a9948 {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05888.WXS.Tbm C3L-05888 AML WXS tumor_bone_marrow CPT0344130001 CPT0344130001.WholeExome.RP-1303.bam 41583876317 BAM aligned CPTAC3 b0507209-4ead-4d97-b1ef-e6037ded7471 bafbf9c2ba7f6532c678bccd4c402891 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05888.WXS.Tbm.hg38 C3L-05888 AML WXS tumor_bone_marrow CPT0344130001 8fbfc62b-debd-49af-a0d1-0d1f015896af_wxs_gdc_realn.bam 57687022271 BAM harmonized CPTAC3 8ac69ed6-88e0-4fc5-bb80-03714c5ae76a 009ba6d960a2ebacc99ef16030ff5619 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.MethArray.Green.Tbm C3L-05889 AML Methylation_Array tumor_bone_marrow CPT0344240001 205555380155_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e3e36f13-811f-43e2-9902-1c2fc7694830 57a3bdcb111fe7dc8635f0bf00d18250 {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.MethArray.Red.Tbm C3L-05889 AML Methylation_Array tumor_bone_marrow CPT0344240001 205555380155_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 2587bcea-0a81-42a8-94ef-1c6575715cf1 83a924b53713edf27cce508d1734b21d {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.miRNA-Seq.S34_L007_R1.Tbm C3L-05889 AML miRNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC31-K00269_0297_AHKCFKBBXY_TTAGGC_S34_L007_R1_001.unaln.bam 214214974 BAM S34_L007_R1 unaligned CPTAC3 e8b05e41-7a98-43c6-94ce-ca49bc2f83bd fedef13de375c31edcd2fd96fe2e624e {"aliquot_tag": "ALQ_d30aa383", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.miRNA-Seq.Tbm.hg38 C3L-05889 AML miRNA-Seq tumor_bone_marrow CPT0344250004 1ffb7470-979b-4aed-a21a-464fd01c9e51_mirnaseq_gdc_realn.bam 241326816 BAM harmonized CPTAC3 99db0a4c-ffc9-4dfc-9846-df166800e32c 0e4a2caaf68a917a5d9f2ba6d2f9136d {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.RNA-Seq.chimeric.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.chimeric.gdc_realn.bam 115997486 BAM chimeric harmonized CPTAC3 695a9b47-346e-4430-847e-34853535f1c1 4d31b557bb3ca1c653e5c8d3c08514b4 {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.RNA-Seq.genomic.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.genomic.gdc_realn.bam 8120164666 BAM genomic harmonized CPTAC3 783b6efd-67bd-4ad8-867c-c32baf366ccb d7f6a18d3c8471cde0fcbbf26974e3ef {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.RNA-Seq.S11_L003_R1.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R1_001.fastq.gz 3804400016 FASTQ S11_L003_R1 unaligned CPTAC3 334cd644-7914-4240-bced-4eb5fd48ef08 ffcbc782ad65a4cf154efc95b538d14a {"aliquot_tag": "ALQ_d30aa383", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.RNA-Seq.S11_L003_R2.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R2_001.fastq.gz 4114619098 FASTQ S11_L003_R2 unaligned CPTAC3 a1e0bf27-ddd9-4980-adaa-d01489605419 425412d8183c7db1862c5689d26e956e {"aliquot_tag": "ALQ_d30aa383", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.RNA-Seq.transcriptome.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.transcriptome.gdc_realn.bam 10451315422 BAM transcriptome harmonized CPTAC3 85abfcd6-3476-4a75-85e8-5da8f9595e76 9de2b127c1eacf0d9759bccd80d56c6c {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.WGS.Nbc C3L-05889 AML WGS buccal_normal CPT0344210003 CPT0344210003.WholeGenome.RP-2158.bam 53373503728 BAM aligned CPTAC3 91a40314-1818-417e-8631-3d97bc4049d5 2075e9393b0c60da259498ba6af2fc31 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05889.WGS.Nbc.hg38 C3L-05889 AML WGS buccal_normal CPT0344210003 9ac06998-0508-4229-bdbe-f688ad33ec5d_wgs_gdc_realn.bam 168276376890 BAM harmonized CPTAC3 da5f49f1-d186-45bd-915a-227329e8b998 3c7048f8246619385ccf4fb70717fcc7 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05889.WGS.Tbm C3L-05889 AML WGS tumor_bone_marrow CPT0344240001 CPT0344240001.WholeGenome.RP-2158.bam 49260815248 BAM aligned CPTAC3 6e682bdc-e761-493b-935f-3a033a66e4e3 c43091dc3fc201ada51c5e1e9a1a154a {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.WGS.Tbm.hg38 C3L-05889 AML WGS tumor_bone_marrow CPT0344240001 91a44851-93b5-4106-a7d2-43bfd9061fdd_wgs_gdc_realn.bam 148289296675 BAM harmonized CPTAC3 75ed27c4-40d0-4082-9acf-9a19fd96b6df a7f547fb69ebdc034b0cdce310403293 {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.WXS.Nbc C3L-05889 AML WXS buccal_normal CPT0344210003 CPT0344210003.WholeExome.RP-1303.bam 25660371616 BAM aligned CPTAC3 c6bb4c53-60d2-4c66-9b6d-9e793b6652ae 782fcd28bad6d618a1ae51bdb964f778 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05889.WXS.Nbc.hg38 C3L-05889 AML WXS buccal_normal CPT0344210003 9ac06998-0508-4229-bdbe-f688ad33ec5d_wxs_gdc_realn.bam 35893960347 BAM harmonized CPTAC3 a1688311-f146-494c-8e4e-49a7a3ded2e4 d2c428d6ee3c9c527fceb588daad7858 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05889.WXS.Tbm C3L-05889 AML WXS tumor_bone_marrow CPT0344240001 CPT0344240001.WholeExome.RP-1303.bam 21468382058 BAM aligned CPTAC3 266926a8-eda2-4aa2-a559-631925b01bca 9d56bd121a4ae5d3f61f6933380f1ff3 {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05889.WXS.Tbm.hg38 C3L-05889 AML WXS tumor_bone_marrow CPT0344240001 91a44851-93b5-4106-a7d2-43bfd9061fdd_wxs_gdc_realn.bam 29487886716 BAM harmonized CPTAC3 1148e441-9e4c-4933-ba8c-a74739c59cd6 7ac156d68fb44b5be215558dddaf092b {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.MethArray.Green.Tbm C3L-05891 AML Methylation_Array tumor_bone_marrow CPT0344460002 205589730117_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 073251d4-e3c4-41ae-941a-8386f65f6735 8b84a440222022afd16a808ddca7c57b {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.MethArray.Red.Tbm C3L-05891 AML Methylation_Array tumor_bone_marrow CPT0344460002 205589730117_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 143c5c9d-7475-4f16-8129-32e94b67a53d ef7a2a24508e36df5609e73c8c0af62e {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.miRNA-Seq.S33_L007_R1.Tbm C3L-05891 AML miRNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC31-K00269_0297_AHKCFKBBXY_TGACCA_S33_L007_R1_001.unaln.bam 220925145 BAM S33_L007_R1 unaligned CPTAC3 0e5ecc3c-e44b-49da-bcf8-9a11829da039 bb55518d3e0d13bd1bd8746356595807 {"aliquot_tag": "ALQ_96f0b6cb", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.miRNA-Seq.Tbm.hg38 C3L-05891 AML miRNA-Seq tumor_bone_marrow CPT0344470002 75b9959e-f476-4e3a-aa59-8583cd6f8cd7_mirnaseq_gdc_realn.bam 237980277 BAM harmonized CPTAC3 ad97ba93-ab70-46a9-8554-66a4eefb5ed3 543c6b731257a212d1717453d3d92eb7 {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.RNA-Seq.chimeric.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.chimeric.gdc_realn.bam 125061288 BAM chimeric harmonized CPTAC3 3f692bc8-a618-4339-bd2b-49b9c29accba 0cb7133fa513ae27b96ecc77d6596346 {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.RNA-Seq.genomic.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.genomic.gdc_realn.bam 7414092079 BAM genomic harmonized CPTAC3 70ea5557-22d3-4350-803e-a4c170565909 e9a9cc9874dd86fb9d3d5a81fcacee9d {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.RNA-Seq.S9_L003_R1.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R1_001.fastq.gz 3742419259 FASTQ S9_L003_R1 unaligned CPTAC3 5e9c334a-180d-4890-820b-7cd231323293 f67afd01478bd9587214e63b7367f094 {"aliquot_tag": "ALQ_96f0b6cb", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.RNA-Seq.S9_L003_R2.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R2_001.fastq.gz 3937724088 FASTQ S9_L003_R2 unaligned CPTAC3 2f95d192-8eb5-40a0-9b25-678d8ccd5016 0763172b72c4356c96d3ba5e09c56db2 {"aliquot_tag": "ALQ_96f0b6cb", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.RNA-Seq.transcriptome.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.transcriptome.gdc_realn.bam 8443924819 BAM transcriptome harmonized CPTAC3 74564fc9-c6ad-4677-900f-d5d6d6430091 88ec669cc7959172bd1c5fbc894d23e4 {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.WGS.Nbc C3L-05891 AML WGS buccal_normal CPT0344430002 CPT0344430002.WholeGenome.RP-2158.bam 60418028656 BAM aligned CPTAC3 ebb4cb9b-34b8-4d0a-896f-a1d4eb1aa930 e9d45de02858835ba620bb2f9a67a99f {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05891.WGS.Nbc.hg38 C3L-05891 AML WGS buccal_normal CPT0344430002 0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wgs_gdc_realn.bam 196247280574 BAM harmonized CPTAC3 aa5e5bd5-4de1-4fc8-9900-db318dd44574 a598e08ba21ec46579405d4f90b885b1 {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05891.WGS.Tbm C3L-05891 AML WGS tumor_bone_marrow CPT0344460002 CPT0344460002.WholeGenome.RP-2158.bam 53356809941 BAM aligned CPTAC3 45a58ac1-bbda-482f-8836-661caa2b8483 c9bed33cba691de6f78c4320d04b493a {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.WGS.Tbm.hg38 C3L-05891 AML WGS tumor_bone_marrow CPT0344460002 e06dcccc-bd53-41b6-815e-5ac4e351fa97_wgs_gdc_realn.bam 152372269151 BAM harmonized CPTAC3 9f9777c6-debb-46c5-a695-f9d04ec1236c 3f212900680f470cd0edcc1267acd1a3 {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.WXS.Nbc C3L-05891 AML WXS buccal_normal CPT0344430002 CPT0344430002.WholeExome.RP-1303.bam 33463462757 BAM aligned CPTAC3 778c0ea6-b5f9-4578-bad6-c19e1646af58 5764c861b91f1ea3dfa5b5b155b14727 {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05891.WXS.Nbc.hg38 C3L-05891 AML WXS buccal_normal CPT0344430002 0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wxs_gdc_realn.bam 46274197322 BAM harmonized CPTAC3 08dfa21d-c21b-4a87-8285-94d4978a4cbc b30004e66dbb585307108593ec459bb1 {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05891.WXS.Tbm C3L-05891 AML WXS tumor_bone_marrow CPT0344460002 CPT0344460002.WholeExome.RP-1303.bam 26377484748 BAM aligned CPTAC3 be076348-9167-46bf-8712-554ba5b40a62 6e59ddc2724a49b1fc8a5448813177cc {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05891.WXS.Tbm.hg38 C3L-05891 AML WXS tumor_bone_marrow CPT0344460002 e06dcccc-bd53-41b6-815e-5ac4e351fa97_wxs_gdc_realn.bam 36023652593 BAM harmonized CPTAC3 e8855cd6-e357-4889-b201-d59dd9e8e6f5 5be131e3997b3e2e54cf8ade152eab39 {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.MethArray.Green.Tbm C3L-05892 AML Methylation_Array tumor_bone_marrow CPT0344570002 205555390174_R07C01_Grn.idat 13677965 IDAT Green NA CPTAC3 32969927-2f15-4e71-a9ec-90167211f6cd 1fb4682fdca6b57714b0ef08d669a20f {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.MethArray.Red.Tbm C3L-05892 AML Methylation_Array tumor_bone_marrow CPT0344570002 205555390174_R07C01_Red.idat 13677965 IDAT Red NA CPTAC3 6cdaf597-e8df-4ed1-b462-0a064d6c4c93 3c617871a196b119e6628239fd68709d {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.miRNA-Seq.S14_L007_R1.Tbm C3L-05892 AML miRNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACAGTG_S14_L007_R1_001.unaln.bam 226351704 BAM S14_L007_R1 unaligned CPTAC3 16dd3a39-574e-4a2f-9e13-07feb2b5ee77 0bb398b665681cb195f4cd1bb12add38 {"aliquot_tag": "ALQ_dffcf2bf", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.miRNA-Seq.Tbm.hg38 C3L-05892 AML miRNA-Seq tumor_bone_marrow CPT0344580002 43a4585c-44e2-4532-8cf6-73dca98d345e_mirnaseq_gdc_realn.bam 240129874 BAM harmonized CPTAC3 05ccb4e4-f3c4-42a1-a613-ab84f4bfd8c9 e79b547cbdcc5d2b6c0dae60a56b5978 {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.RNA-Seq.chimeric.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.chimeric.gdc_realn.bam 125580417 BAM chimeric harmonized CPTAC3 848c1061-a89e-409f-8014-fa9b95bca8f3 74be8a6238e45fac040bb3a0af41e05c {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.RNA-Seq.genomic.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.genomic.gdc_realn.bam 8980071101 BAM genomic harmonized CPTAC3 b168c5b2-9699-49ae-b592-298d708521e2 44b48b28c9488a4a696b1cb7910afbf8 {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.RNA-Seq.S5_L002_R1.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3856451427 FASTQ S5_L002_R1 unaligned CPTAC3 28189eba-fc3b-47fa-ac61-71b9c3fe1e29 80232a7f4ad27f82b426643ee5790b0f {"aliquot_tag": "ALQ_dffcf2bf", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.RNA-Seq.S5_L002_R2.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 4224582460 FASTQ S5_L002_R2 unaligned CPTAC3 624dee72-97d3-4fe3-9653-94dd0f19793d 5a8480f2fa5ca69f1e557f6a00320275 {"aliquot_tag": "ALQ_dffcf2bf", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.RNA-Seq.transcriptome.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.transcriptome.gdc_realn.bam 7471134778 BAM transcriptome harmonized CPTAC3 82e63f79-d94c-4ab7-bdb8-7e46436085a8 8e3bb5986e6653da5b6e6d26571ed662 {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.WGS.Tbm C3L-05892 AML WGS tumor_bone_marrow CPT0344570002 CPT0344570002.WholeGenome.RP-2158.bam 61917713256 BAM aligned CPTAC3 7d352dbc-8a90-45df-855b-a4e98e47cac4 fc49c467876c302fd5843364681ac155 {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.WGS.Tbm.hg38 C3L-05892 AML WGS tumor_bone_marrow CPT0344570002 6b2ae50d-20ab-4dc2-ab5a-1b5370589454_wgs_gdc_realn.bam 174566382789 BAM harmonized CPTAC3 b5088c7b-0d10-4cce-a961-2b8009241317 c2c13449a2d2d3b6b8811163376c8794 {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.WXS.Nbc C3L-05892 AML WXS buccal_normal CPT0344540003 CPT0344540003.WholeExome.RP-1303.bam 29866798117 BAM aligned CPTAC3 9bcd0064-135e-4589-a675-05fb2b24563d 48fb0bbdcb2a7886e80b99251663ce12 {"aliquot_tag": "ALQ_6d0b2f28", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05892.WXS.Nbc.hg38 C3L-05892 AML WXS buccal_normal CPT0344540003 3bc743d0-e149-46ec-a307-fc027b6b2a97_wxs_gdc_realn.bam 40930894212 BAM harmonized CPTAC3 1d5719fd-0d06-4185-9d13-ed1195d72fc4 fb9aae49cc347e7709e22edd7c9f05dc {"aliquot_tag": "ALQ_6d0b2f28", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05892.WXS.Tbm C3L-05892 AML WXS tumor_bone_marrow CPT0344570002 CPT0344570002.WholeExome.RP-1303.bam 23528728112 BAM aligned CPTAC3 1f21eff4-75e0-4fd3-a9af-a5433910fe29 8dd1d6b77e0e905cc3506505cbd347bf {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05892.WXS.Tbm.hg38 C3L-05892 AML WXS tumor_bone_marrow CPT0344570002 6b2ae50d-20ab-4dc2-ab5a-1b5370589454_wxs_gdc_realn.bam 32184558939 BAM harmonized CPTAC3 00b3b841-4dae-4d1d-b106-f15c7d50fcc9 4fe75db2a087b330c1acce7f0ef5a06c {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.MethArray.Green.Tbm C3L-05894 AML Methylation_Array tumor_bone_marrow CPT0300520002 205555380155_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 3e5ff1cb-9336-4411-b4c0-e03022ff0b4d b1d0ae2e519cad66a36ed5463ee6146f {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.MethArray.Red.Tbm C3L-05894 AML Methylation_Array tumor_bone_marrow CPT0300520002 205555380155_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 004acc8d-2415-4b9e-a59e-9b38cca35e63 1aa684ab246b272164b207b78b9c54f3 {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.miRNA-Seq.S17_L001_R1.Tbm C3L-05894 AML miRNA-Seq tumor_bone_marrow CPT0300530002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGGCC_S17_L001_R1_001.unaln.bam 245668617 BAM S17_L001_R1 unaligned CPTAC3 5d975d09-44dc-4085-8238-4efb7f9ad65e 379ed9eb1ac4e66b4be1236aa6d2e5d9 {"aliquot_tag": "ALQ_d829e947", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.miRNA-Seq.Tbm.hg38 C3L-05894 AML miRNA-Seq tumor_bone_marrow CPT0300530002 e4b6780a-9e5d-462a-9787-226f9680e39e_mirnaseq_gdc_realn.bam 266676667 BAM harmonized CPTAC3 c4cbcf70-945e-49f9-8322-e678ecc3e6be fe9875305d2be133869cf5baa685273a {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.RNA-Seq.chimeric.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.chimeric.gdc_realn.bam 92301159 BAM chimeric harmonized CPTAC3 4d281739-b3d7-4dd1-934e-28527f55fb87 2bbf5dd811327a85b3bee88652c0c8c5 {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.RNA-Seq.genomic.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.genomic.gdc_realn.bam 7169723181 BAM genomic harmonized CPTAC3 27b0299f-d71f-47d7-aaa6-0725b9694482 0a3dfbcc11926d7b62228e3d29484598 {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.RNA-Seq.S14_L004_R1.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3647790340 FASTQ S14_L004_R1 unaligned CPTAC3 856e135f-034f-44f6-821f-65ac85cf7475 daa263d589e1e40ad6daed016cd1543d {"aliquot_tag": "ALQ_d829e947", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.RNA-Seq.S14_L004_R2.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3869227268 FASTQ S14_L004_R2 unaligned CPTAC3 50c8b190-4ce0-4bb4-8dc0-b1daf098b6af b2016888ba60b6ecd46130b2619a19f1 {"aliquot_tag": "ALQ_d829e947", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.RNA-Seq.transcriptome.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.transcriptome.gdc_realn.bam 8823923071 BAM transcriptome harmonized CPTAC3 08159852-3449-4694-bb11-82118fe3dc46 1c2e0a4314eb4128a328ff99ea143014 {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.WGS.Tbm C3L-05894 AML WGS tumor_bone_marrow CPT0300520002 CPT0300520002.WholeGenome.RP-2158.bam 51681398515 BAM aligned CPTAC3 3213b80f-331d-42ee-9895-4803c47d1ec4 7ced222c57d562e13c80c8d5b0c0995c {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.WGS.Tbm.hg38 C3L-05894 AML WGS tumor_bone_marrow CPT0300520002 8f262260-85fc-4a2f-a801-8ed54dfe0bd8_wgs_gdc_realn.bam 154276499193 BAM harmonized CPTAC3 8ce18ce7-5ab3-4e55-b031-1e200bad9e76 b3b6f42f597c80dceb1bf30d0d9b51ca {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.WXS.Nbc C3L-05894 AML WXS buccal_normal CPT0300490002 CPT0300490002.WholeExome.RP-1303.bam 22090165704 BAM aligned CPTAC3 5a164828-b5e9-4e2b-a09b-cf227f251209 69a795f31d89d8c8051e34a6d080d95b {"aliquot_tag": "ALQ_59c52243", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05894.WXS.Nbc.hg38 C3L-05894 AML WXS buccal_normal CPT0300490002 3b5bd451-95b6-42e1-b037-2254c5302c95_wxs_gdc_realn.bam 30200452871 BAM harmonized CPTAC3 e1a46f9f-2e3b-482c-a95e-6c04ff1de4b7 23637e659175ef0e2668cc0814d50aab {"aliquot_tag": "ALQ_59c52243", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05894.WXS.Tbm C3L-05894 AML WXS tumor_bone_marrow CPT0300520002 CPT0300520002.WholeExome.RP-1303.bam 24724503632 BAM aligned CPTAC3 3166b044-99ef-4ffb-9668-1e6c4eb5930d 2d69f098ed083d3338cf3bc18629b573 {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05894.WXS.Tbm.hg38 C3L-05894 AML WXS tumor_bone_marrow CPT0300520002 8f262260-85fc-4a2f-a801-8ed54dfe0bd8_wxs_gdc_realn.bam 33553658365 BAM harmonized CPTAC3 c615455d-4137-4d2d-a581-25ec5cc8b0d7 7f8bde1a55978a8eac48d40111a60886 {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05896.MethArray.Green.Tbm C3L-05896 AML Methylation_Array tumor_bone_marrow CPT0344840002 205987780161_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6cb11088-5809-4f10-b0db-76d7545b78e3 e90640d50655ac3fcd55439ecfe51f60 {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05896.MethArray.Red.Tbm C3L-05896 AML Methylation_Array tumor_bone_marrow CPT0344840002 205987780161_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 9544f37c-f46e-4537-85eb-96410184f6d8 541b2933621fe0e3d46f1d1d99105d00 {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05896.miRNA-Seq.S11_L001_R1.Tpb C3L-05896 AML miRNA-Seq tumor_peripheral_blood CPT0344870002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L001_R1_001.unaln.bam 262339419 BAM S11_L001_R1 unaligned CPTAC3 8ce9e68b-b412-4911-b102-4dd0d4c1d98f 3d89acf999708067b88947e35a13bb0b {"aliquot_tag": "ALQ_e13276b0", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05896.miRNA-Seq.Tpb.hg38 C3L-05896 AML miRNA-Seq tumor_peripheral_blood CPT0344870002 00cd7b06-6c39-4da0-b497-5d16762c9594_mirnaseq_gdc_realn.bam 284801918 BAM harmonized CPTAC3 5a6fd180-ec96-4df2-9b70-236b7fd14926 825038f671a24199ba516ca1ea2f4578 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05896.RNA-Seq.chimeric.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.chimeric.gdc_realn.bam 507929428 BAM chimeric harmonized CPTAC3 e056a8f6-aa98-40b8-ae92-e3cb2d15f647 90d5a57806435472b36fd842aeae1f23 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05896.RNA-Seq.genomic.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.genomic.gdc_realn.bam 8645804622 BAM genomic harmonized CPTAC3 447ec45c-a31e-41ef-83f2-8a755213f942 ccc22730d19704f7dda845007df3e379 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05896.RNA-Seq.S16_L004_R1.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R1_001.fastq.gz 4244493510 FASTQ S16_L004_R1 unaligned CPTAC3 311f9869-14ad-4d89-a131-5d510c836065 aeecbf2d5db55a6f519795ea05d7296d {"aliquot_tag": "ALQ_e13276b0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05896.RNA-Seq.S16_L004_R2.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R2_001.fastq.gz 4581900123 FASTQ S16_L004_R2 unaligned CPTAC3 7f023f41-7b84-4b3d-bb5e-85fae3e0d179 f796ed68990b318a66f7d88b101f8403 {"aliquot_tag": "ALQ_e13276b0", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05896.RNA-Seq.transcriptome.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.transcriptome.gdc_realn.bam 9045706078 BAM transcriptome harmonized CPTAC3 21c70f0b-f80c-436f-a5e9-74f524ea34b7 b3e9e51be2b07098f90b4cae57244307 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05896.WGS.Nbc C3L-05896 AML WGS buccal_normal CPT0344810003 CPT0344810003.WholeGenome.RP-2158.bam 49555549432 BAM aligned CPTAC3 124d0975-02aa-42cb-9d40-812e14646807 778a44eb752209393467b3cd5ef2b89d {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05896.WGS.Nbc.hg38 C3L-05896 AML WGS buccal_normal CPT0344810003 a8787364-b796-4765-9d33-4704430f6803_wgs_gdc_realn.bam 149874320363 BAM harmonized CPTAC3 80234ef6-f17c-4840-ae61-720e520c53ee 427a31e782bc50473eaa4d5e6838a890 {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05896.WGS.Tbm C3L-05896 AML WGS tumor_bone_marrow CPT0344840002 CPT0344840002.WholeGenome.RP-2158.bam 48320264108 BAM aligned CPTAC3 be97c4aa-12ef-47d5-91bc-5530c9f799b9 de3513d47c47b01a1bdb36f20e2fcaed {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05896.WGS.Tbm.hg38 C3L-05896 AML WGS tumor_bone_marrow CPT0344840002 289d953c-baea-4aae-9b01-3cff1fd8464f_wgs_gdc_realn.bam 143146606316 BAM harmonized CPTAC3 0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7 0a7be7b15c380fa31e79c208aa275cde {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05896.WXS.Nbc C3L-05896 AML WXS buccal_normal CPT0344810003 CPT0344810003.WholeExome.RP-1303.bam 26366554171 BAM aligned CPTAC3 5de65a0a-ae3a-4d11-9df2-489b96d2d5fc fe2abaf27fe7e0c15a8da54f562fcd2e {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05896.WXS.Nbc.hg38 C3L-05896 AML WXS buccal_normal CPT0344810003 a8787364-b796-4765-9d33-4704430f6803_wxs_gdc_realn.bam 35527659437 BAM harmonized CPTAC3 5cb56b61-4615-4065-aedb-ac4019618f66 8257a4ee8abc941dc907d5301b8d598a {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05896.WXS.Tbm C3L-05896 AML WXS tumor_bone_marrow CPT0344840002 CPT0344840002.WholeExome.RP-1303.bam 27978569074 BAM aligned CPTAC3 3cc289dd-24ab-4686-94e3-4b0c1413203b b13b9a8474e9b476758b38ee943e9662 {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05896.WXS.Tbm.hg38 C3L-05896 AML WXS tumor_bone_marrow CPT0344840002 289d953c-baea-4aae-9b01-3cff1fd8464f_wxs_gdc_realn.bam 38735747297 BAM harmonized CPTAC3 36fc5398-69bf-40ee-8769-44aed38629be c22f4b6778fc3b5c08914204cc3bd4fd {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05898.MethArray.Green.Tbm C3L-05898 AML Methylation_Array tumor_bone_marrow CPT0344950002 205987770157_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 06b9b51d-e25a-46ba-a475-dd76cb973656 533128d774f8352af3556d7b20a8782d {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05898.MethArray.Red.Tbm C3L-05898 AML Methylation_Array tumor_bone_marrow CPT0344950002 205987770157_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 3a98a9e6-1a06-42b2-bd5b-841c58216761 c4d0e551bd8c800b4cd2b8e1faa5d46c {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05898.miRNA-Seq.S12_L001_R1.Tpb C3L-05898 AML miRNA-Seq tumor_peripheral_blood CPT0344980002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L001_R1_001.unaln.bam 322158345 BAM S12_L001_R1 unaligned CPTAC3 228b084a-4d22-483e-a6a3-cb928ced5c93 da093b09f3e24b022b8e0aeea0630e5c {"aliquot_tag": "ALQ_a83e32c4", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05898.miRNA-Seq.Tpb.hg38 C3L-05898 AML miRNA-Seq tumor_peripheral_blood CPT0344980002 ee6a82bf-2a3a-4a6e-820f-e1252ee0ce89_mirnaseq_gdc_realn.bam 348546487 BAM harmonized CPTAC3 e2fcb0d6-5daf-4f23-9d8a-1d9bd876ee51 061bd63360187644a7ebf3c750bc6afe {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05898.RNA-Seq.chimeric.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.chimeric.gdc_realn.bam 472595446 BAM chimeric harmonized CPTAC3 9658f58d-950a-4973-8cd9-c5afa8f22e95 b9dc24040f6f6d6a33a21ff84597645b {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05898.RNA-Seq.genomic.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.genomic.gdc_realn.bam 8286664583 BAM genomic harmonized CPTAC3 7f442cd7-85fc-41de-8598-455bdae60199 d363d85615301e3cc9375c2916304546 {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05898.RNA-Seq.S17_L005_R1.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R1_001.fastq.gz 3654511623 FASTQ S17_L005_R1 unaligned CPTAC3 13dade3a-17ec-4dcc-b306-27c6c282aebd aaacaa90f29b193263e95ab1704fa725 {"aliquot_tag": "ALQ_a83e32c4", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05898.RNA-Seq.S17_L005_R2.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R2_001.fastq.gz 3974470097 FASTQ S17_L005_R2 unaligned CPTAC3 6717aa61-9187-4996-ae44-d79dd6e1b16d bfbc70c705f889dfa7c0823d46c200d4 {"aliquot_tag": "ALQ_a83e32c4", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05898.RNA-Seq.transcriptome.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.transcriptome.gdc_realn.bam 6925380648 BAM transcriptome harmonized CPTAC3 8b627ce6-87b0-4b0a-93b5-9356f5589f37 4f006c44d6e2b4ec5c00b933f2a9e8e4 {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05898.WGS.Tbm C3L-05898 AML WGS tumor_bone_marrow CPT0344950002 CPT0344950002.WholeGenome.RP-2158.bam 43658142411 BAM aligned CPTAC3 b0bb007f-a7e2-41f8-948d-60adaec827b5 bcb6520c7a3bc470a527579c74fa553e {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05898.WGS.Tbm.hg38 C3L-05898 AML WGS tumor_bone_marrow CPT0344950002 7a2b9e09-2bca-4aea-ba5c-9dbf0b30bf40_wgs_gdc_realn.bam 133152812373 BAM harmonized CPTAC3 6f49e9fe-df23-4e18-9a92-d2a21bc2344c 627c38a1ca11998c2cc634a55b10b60f {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05898.WXS.Nbc C3L-05898 AML WXS buccal_normal CPT0344920005 CPT0344920005.WholeExome.RP-1303.bam 24338718505 BAM aligned CPTAC3 7968b926-37e4-4c89-8477-11a967ed8c25 2b9f0949e7c2cfe4f916a53a23d3e9dc {"aliquot_tag": "ALQ_7ceabfc6", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05898.WXS.Nbc.hg38 C3L-05898 AML WXS buccal_normal CPT0344920005 ac06d127-7ee9-460f-88e8-dad1bc7b8f8a_wxs_gdc_realn.bam 32893244271 BAM harmonized CPTAC3 c207cee2-93ef-463d-aec6-ceaf6b131c3f ae4f0f3b6c8ea9cefd22cd0b19e27cff {"aliquot_tag": "ALQ_7ceabfc6", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05898.WXS.Tbm C3L-05898 AML WXS tumor_bone_marrow CPT0344950002 CPT0344950002.WholeExome.RP-1303.bam 28549605478 BAM aligned CPTAC3 bf4a5777-1b1b-4c80-a38a-0cc71f87118a 2379f13c9417464c5418d0a6bee80469 {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05898.WXS.Tbm.hg38 C3L-05898 AML WXS tumor_bone_marrow CPT0344950002 7a2b9e09-2bca-4aea-ba5c-9dbf0b30bf40_wxs_gdc_realn.bam 39906623067 BAM harmonized CPTAC3 4528565c-d11e-46b6-815c-17e44f7f1859 d49638f36c89f152cdd748f258af6901 {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05905.MethArray.Green.Tpb C3L-05905 AML Methylation_Array tumor_peripheral_blood CPT0345310002 205705520145_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 af67b6b5-d0ba-43d3-bb1f-35aca3db6a1e 313b9c17837e2e5972395d923e92c5a6 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.MethArray.Red.Tpb C3L-05905 AML Methylation_Array tumor_peripheral_blood CPT0345310002 205705520145_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 4e139239-d771-4a7c-aa39-1f43356bc047 4b3743e4b7033131c63f3017a9afcb9d {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.miRNA-Seq.S34_L002_R1.Tpb C3L-05905 AML miRNA-Seq tumor_peripheral_blood CPT0345320002 220125_UNC32-K00270_0311_AHMNYYBBXY_GATCAG_S34_L002_R1_001.unaln.bam 197197875 BAM S34_L002_R1 unaligned CPTAC3 3c83b257-534b-47df-8941-835a86e7bef0 80a0a8c4cdcab26bb1d5d00c3674e128 {"aliquot_tag": "ALQ_e56202b7", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.miRNA-Seq.Tpb.hg38 C3L-05905 AML miRNA-Seq tumor_peripheral_blood CPT0345320002 71a10c9b-72b6-430e-b1d1-1d13a93e2415_mirnaseq_gdc_realn.bam 219029289 BAM harmonized CPTAC3 a409066d-3a11-40a5-9e15-51edc2d147f1 c5bf1b58026e107f84c08265ad5a7574 {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.RNA-Seq.chimeric.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.chimeric.gdc_realn.bam 459901022 BAM chimeric harmonized CPTAC3 49994065-d09a-459e-85fd-97d6480ea82d 6eb4c8db561f4e76b754463ffea32058 {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.RNA-Seq.genomic.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.genomic.gdc_realn.bam 6780800175 BAM genomic harmonized CPTAC3 38198b6b-ea5a-4e77-a33d-c73cdf816e72 7b84f45a2a29509eed3072cae38db063 {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.RNA-Seq.S2_L001_R1.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R1_001.fastq.gz 3429429812 FASTQ S2_L001_R1 unaligned CPTAC3 7fe72174-8147-453f-b08b-0502d721e5f0 e5a38e81ae481eb21115affaac76c8e2 {"aliquot_tag": "ALQ_e56202b7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.RNA-Seq.S2_L001_R2.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R2_001.fastq.gz 3739804390 FASTQ S2_L001_R2 unaligned CPTAC3 78fb450b-4932-417a-8a7b-c7a93b7ac885 51994a8b48450d76eeacb2e73a2b5d55 {"aliquot_tag": "ALQ_e56202b7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.RNA-Seq.transcriptome.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.transcriptome.gdc_realn.bam 7512993551 BAM transcriptome harmonized CPTAC3 661d098f-fb7e-4eb8-ba42-5e24b85ab7f9 d9ce0674bb43a5db48bf51bade46eb6d {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.WGS.Nbc C3L-05905 AML WGS buccal_normal CPT0345240003 CPT0345240003.WholeGenome.RP-2158.bam 47615602604 BAM aligned CPTAC3 f02a12c0-3928-419d-841f-59f5f52740a4 e4e79599c2073d49084c8cf4b8394f94 {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05905.WGS.Nbc.hg38 C3L-05905 AML WGS buccal_normal CPT0345240003 06063016-e53a-44ae-bdcc-6a49f310d450_wgs_gdc_realn.bam 144563530355 BAM harmonized CPTAC3 f3356d52-443e-430b-b183-c2255a34aee4 4ac044281c0461e2ca106b2896a0108d {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05905.WGS.Tpb C3L-05905 AML WGS tumor_peripheral_blood CPT0345310002 CPT0345310002.WholeGenome.RP-2158.bam 49010225233 BAM aligned CPTAC3 9754153b-c5c7-49cb-afe8-fcc30a0a3106 052597964473f89fdc3cfbcffb7b00f1 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.WGS.Tpb.hg38 C3L-05905 AML WGS tumor_peripheral_blood CPT0345310002 3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wgs_gdc_realn.bam 148184199354 BAM harmonized CPTAC3 10d9505e-54f3-4fda-8d41-9397231019b3 1bf812fd27a5f01fd10fe1b6d700e871 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.WXS.Nbc C3L-05905 AML WXS buccal_normal CPT0345240003 CPT0345240003.WholeExome.RP-1303.bam 23121993587 BAM aligned CPTAC3 0e5bcdb8-e735-4d8a-a184-f9927e8f864c 43d9ad8a83b71eca9a3035afefd2c129 {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05905.WXS.Nbc.hg38 C3L-05905 AML WXS buccal_normal CPT0345240003 06063016-e53a-44ae-bdcc-6a49f310d450_wxs_gdc_realn.bam 31688360670 BAM harmonized CPTAC3 f32fb5f4-b57f-4fff-93bd-2ddcc99f3480 33f99fa68a08103abd1cfde825217b91 {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05905.WXS.Tpb C3L-05905 AML WXS tumor_peripheral_blood CPT0345310002 CPT0345310002.WholeExome.RP-1303.bam 23628176341 BAM aligned CPTAC3 357502d9-a2fa-4548-b031-518280265a44 c3bdaa5751a2483e8d6f674dc3296a23 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05905.WXS.Tpb.hg38 C3L-05905 AML WXS tumor_peripheral_blood CPT0345310002 3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wxs_gdc_realn.bam 32772271390 BAM harmonized CPTAC3 72d9a24e-0d39-4ee4-8352-596c34431cbb a10deb1ac8dbfb160bc30820d7ac32f2 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-05907.MethArray.Green.Tbm C3L-05907 AML Methylation_Array tumor_bone_marrow CPT0303920002 205555380136_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d1798da2-3452-4284-9139-8d80bcb7223f ec7994b93c443093346aeb1378cf2f35 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.MethArray.Red.Tbm C3L-05907 AML Methylation_Array tumor_bone_marrow CPT0303920002 205555380136_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 71a188ff-507a-4d85-9080-6a7b60cc9475 97e8270ab3d96bfc28e4bfa9b3b88f9d {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.miRNA-Seq.S10_L001_R1.Tbm C3L-05907 AML miRNA-Seq tumor_bone_marrow CPT0303930002 210702_UNC32-K00270_0289_AHKJ22BBXY_CTTGTA_S10_L001_R1_001.unaln.bam 261293082 BAM S10_L001_R1 unaligned CPTAC3 629e0635-9d6c-4060-acd5-90f9bf0d7c05 200dbe018d81d3d40771282926ac44d5 {"aliquot_tag": "ALQ_9e0333a1", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.miRNA-Seq.Tbm.hg38 C3L-05907 AML miRNA-Seq tumor_bone_marrow CPT0303930002 0c56e912-196a-4028-ae9d-9fd319ab9064_mirnaseq_gdc_realn.bam 280101684 BAM harmonized CPTAC3 a0ccc929-d8ce-4fff-9633-aed771ad22eb 691f548e56297403425bbe407c61a354 {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.RNA-Seq.chimeric.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.chimeric.gdc_realn.bam 206361159 BAM chimeric harmonized CPTAC3 86886cd7-bad1-4e6e-bcc3-d32c2091d8b3 51cb6b755c51226125d9366bb5e724d0 {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.RNA-Seq.genomic.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.genomic.gdc_realn.bam 7138980630 BAM genomic harmonized CPTAC3 056e8013-b590-4e72-9fd8-acb3e3165ae3 78d27d04828f24492ad592b390875739 {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.RNA-Seq.S21_L006_R1.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 3641688186 FASTQ S21_L006_R1 unaligned CPTAC3 e1b09891-6cfe-4899-b6c7-0c6286252c8f f0f5533dbe7d5b141c69ff2a870b7804 {"aliquot_tag": "ALQ_9e0333a1", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.RNA-Seq.S21_L006_R2.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 3798003850 FASTQ S21_L006_R2 unaligned CPTAC3 6fe7fe10-f336-4191-bc15-6b18a17733e6 5933d46aab4a6a4293ca364f7cbd9e7e {"aliquot_tag": "ALQ_9e0333a1", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.RNA-Seq.transcriptome.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.transcriptome.gdc_realn.bam 9734597258 BAM transcriptome harmonized CPTAC3 b11e4f5f-6a8f-4160-bf09-4d0fa57ad1d5 f98ee44913388f8e340c85d0e283681c {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.WGS.Tbm C3L-05907 AML WGS tumor_bone_marrow CPT0303920002 CPT0303920002.WholeGenome.RP-2158.bam 46641710766 BAM aligned CPTAC3 4a4fda2b-3021-4dca-b7b2-e822661f7e75 4b54a710cb1acfed2bb6a825111517a1 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.WGS.Tbm.hg38 C3L-05907 AML WGS tumor_bone_marrow CPT0303920002 efc001f4-8713-47be-bd13-d1b3a5bee982_wgs_gdc_realn.bam 133987663938 BAM harmonized CPTAC3 07a41b7a-7841-449f-842a-afa501612e75 b85e436b70f40061296c2f0436113cfc {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.WXS.Nbc C3L-05907 AML WXS buccal_normal CPT0303960003 CPT0303960003.WholeExome.RP-1303.bam 25378722793 BAM aligned CPTAC3 b18cfb08-33a0-464c-b73f-e4945c228554 d9b3df0ceb3869866dbbc5fa76f45766 {"aliquot_tag": "ALQ_21e48c47", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05907.WXS.Nbc.hg38 C3L-05907 AML WXS buccal_normal CPT0303960003 429db6f5-16c6-4aa1-925b-33d2715bb17e_wxs_gdc_realn.bam 34667825715 BAM harmonized CPTAC3 a144f235-3dd9-49e5-9645-78f7d893cc8c 640987bd25aa593209f972670172b4ac {"aliquot_tag": "ALQ_21e48c47", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05907.WXS.Tbm C3L-05907 AML WXS tumor_bone_marrow CPT0303920002 CPT0303920002.WholeExome.RP-1303.bam 25871164950 BAM aligned CPTAC3 7869dfb0-5064-4af0-a62d-026e9d9776e7 6062b5f18e524d061a8762d785195392 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05907.WXS.Tbm.hg38 C3L-05907 AML WXS tumor_bone_marrow CPT0303920002 efc001f4-8713-47be-bd13-d1b3a5bee982_wxs_gdc_realn.bam 36332508702 BAM harmonized CPTAC3 feddb0fb-240c-4623-8b66-abfbde61da17 36b87acae31d77ca353dc6d3814fa075 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.MethArray.Green.Tbm C3L-05908 AML Methylation_Array tumor_bone_marrow CPT0326900002 205555390119_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a2fcc4b1-bd58-4e6e-8b4d-9687867521b4 4bf5f39353214c35e11aa41746478654 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.MethArray.Red.Tbm C3L-05908 AML Methylation_Array tumor_bone_marrow CPT0326900002 205555390119_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 d8936616-ba26-4828-9af0-0440c21371ad d63ca079e8358018bd32bf365e31d56d {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.miRNA-Seq.S37_L008_R1.Tbm C3L-05908 AML miRNA-Seq tumor_bone_marrow CPT0326910002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATTCCT_S37_L008_R1_001.unaln.bam 346407918 BAM S37_L008_R1 unaligned CPTAC3 e53e5139-00c7-454b-be12-008fe7e9ab7f 7cd18713a32b7de9f9cd2e34e0c2fdb8 {"aliquot_tag": "ALQ_f4de481b", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.miRNA-Seq.Tbm.hg38 C3L-05908 AML miRNA-Seq tumor_bone_marrow CPT0326910002 4bdb201f-d813-4269-8c60-9c80e8489aa5_mirnaseq_gdc_realn.bam 361154778 BAM harmonized CPTAC3 717ff795-e0b0-4e43-9f81-b5df79209ac5 19bf0d733f50de0547ff9f02183c4cd1 {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.RNA-Seq.chimeric.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.chimeric.gdc_realn.bam 226751873 BAM chimeric harmonized CPTAC3 0ee4ed5d-404b-4950-98d6-1f60dfe5ed61 435ba3535f59e7ecf99fcc74e48f7bab {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.RNA-Seq.genomic.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.genomic.gdc_realn.bam 7366577667 BAM genomic harmonized CPTAC3 9b26fd17-3b35-4805-857c-9e7e646498a3 edc52fcfc7c30d88ae9bb719fb22e184 {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.RNA-Seq.S5_L002_R1.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R1_001.fastq.gz 3657355336 FASTQ S5_L002_R1 unaligned CPTAC3 0e1c76c8-7de2-4fd1-9057-cf88ed5ea0d2 fc0ce2c2381f96d0a4651b4ede314188 {"aliquot_tag": "ALQ_f4de481b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.RNA-Seq.S5_L002_R2.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R2_001.fastq.gz 3952540450 FASTQ S5_L002_R2 unaligned CPTAC3 9aba5117-7ae3-416e-880d-7b1136939ec6 2c711bb750b228b827c3b4069e7a1c8b {"aliquot_tag": "ALQ_f4de481b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.RNA-Seq.transcriptome.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.transcriptome.gdc_realn.bam 9190884030 BAM transcriptome harmonized CPTAC3 ef741768-323a-4f91-afae-68b8e7d2c070 02a126c45536e837b1ea2417eabc031a {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.WGS.Nbc C3L-05908 AML WGS buccal_normal CPT0326940002 CPT0326940002.WholeGenome.RP-2158.bam 53174368213 BAM aligned CPTAC3 e016a6af-ec34-4458-abb6-9919490547fb cfe0f1139c79d31384329d2931f747d7 {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05908.WGS.Nbc.hg38 C3L-05908 AML WGS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wgs_gdc_realn.bam 156212712773 BAM harmonized CPTAC3 7bef082d-803e-45b2-b53e-5a1399bf1b5c 34cc2456cf0ae64d6093a6ff7d00623a {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05908.WGS.Tbm C3L-05908 AML WGS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeGenome.RP-2158.bam 46811904451 BAM aligned CPTAC3 9505c88e-d674-4bfe-b33c-0b0cde5e1412 a9f816f32240343a64c489bdea086dcb {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.WGS.Tbm.hg38 C3L-05908 AML WGS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wgs_gdc_realn.bam 141851528279 BAM harmonized CPTAC3 bb0e880d-d80c-4380-87d3-ee42c919d1cb 11df54b6e4a0ddf7815960ae16510e25 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.WXS.Nbc C3L-05908 AML WXS buccal_normal CPT0326940002 CPT0326940002.WholeExome.RP-1303.bam 25970906291 BAM aligned CPTAC3 d2610648-bcf0-46c4-b335-a33b90a1d16b 79d0a492049589d0cda89339dfad7106 {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05908.WXS.Nbc.hg38 C3L-05908 AML WXS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wxs_gdc_realn.bam 35730190416 BAM harmonized CPTAC3 75eb2cb6-1dc2-4830-8a38-415e4fe1d03c 98f60c535c7b069b5746547e9a385bd0 {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-05908.WXS.Tbm C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeExome.RP-1303.bam 21302425000 BAM aligned CPTAC3 ef626016-61b3-49ec-b3cb-5be53dc4ebe7 913f591a2a0c30d7778813b189ae9377 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-05908.WXS.Tbm.hg38 C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wxs_gdc_realn.bam 29849365051 BAM harmonized CPTAC3 24bc77be-7a63-4942-a438-31028cc4fea9 89a4c09d505f0ce5d0d7eb62879fe6b6 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.MethArray.Green.Tbm C3L-06061 AML Methylation_Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4d05bfb3-9c0d-4766-98f1-9d1f86cda575 6eb3165b1f380d36d2a73ce24a95c68f {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.MethArray.Red.Tbm C3L-06061 AML Methylation_Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 197ccda7-f444-4f02-bdc3-ce18ae6c4889 c6ba9d606744484d8c0265333d156fac {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.miRNA-Seq.S53_L008_R1.Tbm C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 210331_UNC31-K00269_0297_AHKCFKBBXY_GAGTGG_S53_L008_R1_001.unaln.bam 285259644 BAM S53_L008_R1 unaligned CPTAC3 cfe69a28-e93d-4b5f-96e4-cdecc79dede1 f72e798d4b3ce098745ec927b1899c98 {"aliquot_tag": "ALQ_56f937a8", "sample": "S53", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.miRNA-Seq.Tbm.hg38 C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 c0c570e3-d0b6-4bbd-88c8-a988499694d4_mirnaseq_gdc_realn.bam 301265191 BAM harmonized CPTAC3 72aebe03-b049-43ce-821b-26bfaa7d79cf 512a2117f5261aeefd5f5020222f137c {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.RNA-Seq.chimeric.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.chimeric.gdc_realn.bam 108285959 BAM chimeric harmonized CPTAC3 f112773b-980d-4c65-99fc-302938eb49ff 3d7e66dbfc8b80d775e8616a0eb313ee {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.RNA-Seq.genomic.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.genomic.gdc_realn.bam 8059507252 BAM genomic harmonized CPTAC3 045dbae3-457c-4f47-b108-2c57b4d6831e 38feaae466b1240dbcd535e351a63968 {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.RNA-Seq.S9_L003_R1.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R1_001.fastq.gz 3980290410 FASTQ S9_L003_R1 unaligned CPTAC3 005d06a5-42a7-4ea5-ba2a-9bbbf8295f42 5cc0ad663c28f3b522c523cdbaa45c8b {"aliquot_tag": "ALQ_56f937a8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.RNA-Seq.S9_L003_R2.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R2_001.fastq.gz 4233823990 FASTQ S9_L003_R2 unaligned CPTAC3 8f38d303-fb14-433f-8cc2-b6ea37044a4f dbd4e3b6907bbb5371c210016903a73f {"aliquot_tag": "ALQ_56f937a8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.RNA-Seq.transcriptome.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.transcriptome.gdc_realn.bam 11616850377 BAM transcriptome harmonized CPTAC3 5d2cc8f3-a5cc-453c-8568-0edab80bb065 eca36d716ecdb1130ed0b29b40169e81 {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.WGS.Nbc C3L-06061 AML WGS buccal_normal CPT0326440002 CPT0326440002.WholeGenome.RP-2158.bam 45038125820 BAM aligned CPTAC3 580ee243-90ee-4387-ae82-44f2d90a6097 6fa528af9dc9078f6cc5bda1a5cac64c {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06061.WGS.Nbc.hg38 C3L-06061 AML WGS buccal_normal CPT0326440002 d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wgs_gdc_realn.bam 133685404348 BAM harmonized CPTAC3 d3aa2183-2a2b-49cb-94aa-722bb084d738 30d122cee6434aaf2b853f368c0185a5 {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06061.WGS.Tbm C3L-06061 AML WGS tumor_bone_marrow CPT0326230002 CPT0326230002.WholeGenome.RP-2158.bam 44818890902 BAM aligned CPTAC3 9eb34b24-719a-44b8-823a-fb559e0eeafb e3d505b65937f21dfe7188296e5eba27 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.WGS.Tbm.hg38 C3L-06061 AML WGS tumor_bone_marrow CPT0326230002 c1ddcce6-a66e-47be-a293-652a21b03956_wgs_gdc_realn.bam 127949661212 BAM harmonized CPTAC3 df2b1538-16cb-4e8b-8347-592204bd6de2 9e3c53d99947c78c76ab7e3ae2050a63 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.WXS.Nbc C3L-06061 AML WXS buccal_normal CPT0326440002 CPT0326440002.WholeExome.RP-1303.bam 32063891291 BAM aligned CPTAC3 94c26fe2-74ee-4938-8fac-40751f5f4ddc 162c87af051423b795b0cce76ca328a2 {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06061.WXS.Nbc.hg38 C3L-06061 AML WXS buccal_normal CPT0326440002 d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wxs_gdc_realn.bam 43881323457 BAM harmonized CPTAC3 070f59df-e71c-4c18-b973-c155ce3a5387 884830626d9dfe501a60e1ba9cffa527 {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06061.WXS.Tbm C3L-06061 AML WXS tumor_bone_marrow CPT0326230002 CPT0326230002.WholeExome.RP-1303.bam 24918016369 BAM aligned CPTAC3 e54485dd-b674-44d6-98a8-e56cec710939 d7292cecabab3599cc5b093f91690e37 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06061.WXS.Tbm.hg38 C3L-06061 AML WXS tumor_bone_marrow CPT0326230002 c1ddcce6-a66e-47be-a293-652a21b03956_wxs_gdc_realn.bam 34828076310 BAM harmonized CPTAC3 66892cd4-c8b6-433a-9324-1051b3fb8b30 398c4af53d84455ac83aecb32de1cc09 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.MethArray.Green.Tbm C3L-06063 AML Methylation_Array tumor_bone_marrow CPT0326000002 205555380155_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 5c411da8-4b41-46ac-a3fd-bdf6c51f70ef f2d89adc27c680d97cc5f650e65455cf {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.MethArray.Red.Tbm C3L-06063 AML Methylation_Array tumor_bone_marrow CPT0326000002 205555380155_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 e849d399-7c8f-44ac-ae37-b4ed77c54aa6 afaa0e0aaf33cf6b9cc7a58bb1e20bff {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.miRNA-Seq.S18_L001_R1.Tbm C3L-06063 AML miRNA-Seq tumor_bone_marrow CPT0326010002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTTTCG_S18_L001_R1_001.unaln.bam 418166477 BAM S18_L001_R1 unaligned CPTAC3 6ccba838-5ba7-452d-a327-67b1de52adb5 0b7a7fb85802fc0ea8a0ab0f5242eb48 {"aliquot_tag": "ALQ_d3d119d3", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.miRNA-Seq.Tbm.hg38 C3L-06063 AML miRNA-Seq tumor_bone_marrow CPT0326010002 9de0e317-ac3a-44e5-9f55-48d30c38ea3d_mirnaseq_gdc_realn.bam 440455591 BAM harmonized CPTAC3 c269c69d-af10-46c8-ad86-036ae1036c7c c03b37fc4ffa70bf60366170df5b4267 {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.RNA-Seq.chimeric.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.chimeric.gdc_realn.bam 127867626 BAM chimeric harmonized CPTAC3 ee29007a-e02b-4ea2-8eec-cc5685395d37 fc231bec8d634cc431eaad3ad7c87c02 {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.RNA-Seq.genomic.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.genomic.gdc_realn.bam 7549097441 BAM genomic harmonized CPTAC3 86dd292a-526f-4a8c-844d-472f4311032c 7562a06c3ce71f4da7da8e8b7036c84a {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.RNA-Seq.S11_L003_R1.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R1_001.fastq.gz 3718330896 FASTQ S11_L003_R1 unaligned CPTAC3 cea7d79a-f245-4cff-adc5-8b40e27d01ff 88280f41cd98e2ee4da43daa44115b18 {"aliquot_tag": "ALQ_d3d119d3", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.RNA-Seq.S11_L003_R2.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R2_001.fastq.gz 4003836171 FASTQ S11_L003_R2 unaligned CPTAC3 d0b88942-9ee9-4d23-ac4a-1f6f6c466fd6 99acf480d377674c911b5e9f11efaef2 {"aliquot_tag": "ALQ_d3d119d3", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.RNA-Seq.transcriptome.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.transcriptome.gdc_realn.bam 9899861331 BAM transcriptome harmonized CPTAC3 f4d3b2e1-ed57-42ca-9b1f-ab9462453f82 8ea1c63d4c45c7d40c7c11f7cd27b225 {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.WGS.Nbc C3L-06063 AML WGS buccal_normal CPT0326100003 CPT0326100003.WholeGenome.RP-2158.bam 53597520767 BAM aligned CPTAC3 d0353e99-4031-4dc2-b786-d048080d503a aef1d7a1a4aad5e605682300c33f9755 {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06063.WGS.Nbc.hg38 C3L-06063 AML WGS buccal_normal CPT0326100003 72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wgs_gdc_realn.bam 162794371517 BAM harmonized CPTAC3 b3d51cee-b87d-49f6-ab1d-58196bb20849 3952bc2bcced6abc120d617696a9575a {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06063.WGS.Tbm C3L-06063 AML WGS tumor_bone_marrow CPT0326000002 CPT0326000002.WholeGenome.RP-2158.bam 50051809682 BAM aligned CPTAC3 80bdc8c6-d394-47f5-b8a6-26a91cdc18f5 c6b86983db456bb71db8e1a085209dc6 {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.WGS.Tbm.hg38 C3L-06063 AML WGS tumor_bone_marrow CPT0326000002 604ee056-6daa-49f6-a5d1-b008305502b6_wgs_gdc_realn.bam 150586264993 BAM harmonized CPTAC3 e8f9b051-60b0-4579-b572-7b85f6a049e9 6ca61890287abee39b0726074eaacaa3 {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.WXS.Nbc C3L-06063 AML WXS buccal_normal CPT0326100003 CPT0326100003.WholeExome.RP-1303.bam 26383107486 BAM aligned CPTAC3 c053b5ea-1faa-4345-8f02-dd351cbde43a 6a684ab2a73c3e6c45d2256fd498ea29 {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06063.WXS.Nbc.hg38 C3L-06063 AML WXS buccal_normal CPT0326100003 72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wxs_gdc_realn.bam 36806573391 BAM harmonized CPTAC3 aa330441-41ff-469b-ace7-099764cd0d6a 129f9bb7bfc9e894e7b058f94267e888 {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06063.WXS.Tbm C3L-06063 AML WXS tumor_bone_marrow CPT0326000002 CPT0326000002.WholeExome.RP-1303.bam 23528685414 BAM aligned CPTAC3 eaddc68b-983f-46b0-91f2-56adf6ef2202 cadc1ddbbbcdd774446cf06687595508 {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06063.WXS.Tbm.hg38 C3L-06063 AML WXS tumor_bone_marrow CPT0326000002 604ee056-6daa-49f6-a5d1-b008305502b6_wxs_gdc_realn.bam 32733625918 BAM harmonized CPTAC3 91a0f789-f4cd-444a-b0d2-da59c69fb392 22be2ea7956fa2abd2af93c98578921d {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.MethArray.Green.Tbm C3L-06064 AML Methylation_Array tumor_bone_marrow CPT0326760002 205555390119_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d85bcae2-cd85-4757-aba8-14b715276c73 842f9cadd4b35ee3b9282a639221f6e9 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.MethArray.Red.Tbm C3L-06064 AML Methylation_Array tumor_bone_marrow CPT0326760002 205555390119_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e791a789-68cf-443a-a2e7-668b52ab6174 bcc7e84913f74a58ce847ecfe05f2d55 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.miRNA-Seq.S36_L008_R1.Tbm C3L-06064 AML miRNA-Seq tumor_bone_marrow CPT0326770002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATGAGC_S36_L008_R1_001.unaln.bam 303511829 BAM S36_L008_R1 unaligned CPTAC3 48ae323a-8c8e-4598-949e-03a86a0e62db a4a1f14ca2f90d41c69786ee637cdf22 {"aliquot_tag": "ALQ_4194dccb", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.miRNA-Seq.Tbm.hg38 C3L-06064 AML miRNA-Seq tumor_bone_marrow CPT0326770002 89a056cf-8357-465f-94b5-825c8d9ed9f9_mirnaseq_gdc_realn.bam 315197105 BAM harmonized CPTAC3 eed274d4-eb3e-4428-8ae0-8d9e3f0cf7f8 67d190ae6362c92393f6d63367309285 {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.RNA-Seq.chimeric.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.chimeric.gdc_realn.bam 156851411 BAM chimeric harmonized CPTAC3 dabd7313-0a03-4a75-b070-b12b77fd4845 f80741f20a9009f1721ea6bc74b7d86b {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.RNA-Seq.genomic.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.genomic.gdc_realn.bam 7576158382 BAM genomic harmonized CPTAC3 89cf57d1-1d1b-4456-8578-fa898a5a053f 73dad8052ba8bd5367e600c5db0df8c2 {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.RNA-Seq.S8_L002_R1.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R1_001.fastq.gz 3804957009 FASTQ S8_L002_R1 unaligned CPTAC3 dca6015e-b9bf-4f95-bc57-dd1dcf9c8df6 644852782834649fdde13c1ada234789 {"aliquot_tag": "ALQ_4194dccb", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.RNA-Seq.S8_L002_R2.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R2_001.fastq.gz 4107726492 FASTQ S8_L002_R2 unaligned CPTAC3 a5178138-97f9-4d77-8c44-2497d38911dc 76f4753e59d6bc73143d35647ed87453 {"aliquot_tag": "ALQ_4194dccb", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.RNA-Seq.transcriptome.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.transcriptome.gdc_realn.bam 10134884832 BAM transcriptome harmonized CPTAC3 65449d92-d8fd-4076-90fb-27f31279c556 20e223f75a4ab37bf62283cfa45d6e21 {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.WGS.Nbc C3L-06064 AML WGS buccal_normal CPT0326860003 CPT0326860003.WholeGenome.RP-2158.bam 47646943334 BAM aligned CPTAC3 5de8d6ee-bb3a-4099-bcee-1ac3127bed6b 3baaabf58a329eea102129ea82d14db1 {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06064.WGS.Nbc.hg38 C3L-06064 AML WGS buccal_normal CPT0326860003 6455cf06-0477-4d1e-b874-c5886e4e1137_wgs_gdc_realn.bam 148389243797 BAM harmonized CPTAC3 c7599d97-a30f-463f-82c9-b3f8dfc5abbe 78e8d679bd433df6ba48c90f513dce8a {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06064.WGS.Tbm C3L-06064 AML WGS tumor_bone_marrow CPT0326760002 CPT0326760002.WholeGenome.RP-2158.bam 60154250259 BAM aligned CPTAC3 796237ad-048c-402e-a86f-be0aece8f77a a6aff1177420d1bcb07b52dc46fee289 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.WGS.Tbm.hg38 C3L-06064 AML WGS tumor_bone_marrow CPT0326760002 0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wgs_gdc_realn.bam 179277085556 BAM harmonized CPTAC3 57ed6f78-7ead-42e1-91d1-8922419b163c 5f538c00cb6bf127e3e5e1cd840182b6 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.WXS.Nbc C3L-06064 AML WXS buccal_normal CPT0326860003 CPT0326860003.WholeExome.RP-1303.bam 27382952577 BAM aligned CPTAC3 7f3261f9-4f59-4ce5-84a3-d3d1732b0f9d 22d96fdb13d7c7dcf0279063f9e687ca {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06064.WXS.Nbc.hg38 C3L-06064 AML WXS buccal_normal CPT0326860003 6455cf06-0477-4d1e-b874-c5886e4e1137_wxs_gdc_realn.bam 38310534027 BAM harmonized CPTAC3 102d71ec-b7c0-4996-a48f-84e52499162d 45c2f20dc9111c07dd9b5469ecc8b5d5 {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06064.WXS.Tbm C3L-06064 AML WXS tumor_bone_marrow CPT0326760002 CPT0326760002.WholeExome.RP-1303.bam 26722565833 BAM aligned CPTAC3 a2bd75c1-e577-49b0-b5ae-6d3d650693ed 998b8c369c3fcef6ba214ff78d5b82ac {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06064.WXS.Tbm.hg38 C3L-06064 AML WXS tumor_bone_marrow CPT0326760002 0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wxs_gdc_realn.bam 37309780760 BAM harmonized CPTAC3 6f021375-1a8e-4d1b-afb1-87fdf2a37bb2 b42fd632380a61e23c684af1893b4167 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.MethArray.Green.Tbm C3L-06066 AML Methylation_Array tumor_bone_marrow CPT0357240002 205555380179_R07C01_Grn.idat 13677960 IDAT Green NA CPTAC3 9e33f0ed-7fa0-48b8-a910-44822080d435 88615e964fe9863484eb12bc40096648 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.MethArray.Red.Tbm C3L-06066 AML Methylation_Array tumor_bone_marrow CPT0357240002 205555380179_R07C01_Red.idat 13677960 IDAT Red NA CPTAC3 c97e0731-c9d3-4e78-9334-82f9acfef6cc aea871923b9db88875ad92c24449b916 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.miRNA-Seq.S47_L008_R1.Tbm C3L-06066 AML miRNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGGAAT_S47_L008_R1_001.unaln.bam 322066097 BAM S47_L008_R1 unaligned CPTAC3 976b3234-2b27-49bf-92a7-26eb02ad7dab 7178032d101a09bf537a06e12be80ce7 {"aliquot_tag": "ALQ_c72b1cb5", "sample": "S47", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.miRNA-Seq.Tbm.hg38 C3L-06066 AML miRNA-Seq tumor_bone_marrow CPT0357250002 4e934679-7371-4d9c-9af1-efbe8f0244eb_mirnaseq_gdc_realn.bam 333344963 BAM harmonized CPTAC3 ee812da5-17d6-435e-9270-49c862f026aa be4eabd9f165e188ce5e5aaec14ba085 {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.RNA-Seq.chimeric.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.chimeric.gdc_realn.bam 46123884 BAM chimeric harmonized CPTAC3 697866f1-68f4-415f-bbee-8dfbd63406e8 034c86a92fa329b5e2a170f116b0548e {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.RNA-Seq.genomic.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.genomic.gdc_realn.bam 9156038467 BAM genomic harmonized CPTAC3 f1acb2c3-ee3e-4163-844b-2168eb39c07f 2fd84ea02e3038275f6a4e04202fd11e {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.RNA-Seq.S21_L006_R1.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3526785750 FASTQ S21_L006_R1 unaligned CPTAC3 aca652c7-2628-4911-b25c-6c1796845e9f fb6fc15d437c046478f9d8bc74ebb0e3 {"aliquot_tag": "ALQ_c72b1cb5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.RNA-Seq.S21_L006_R2.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3869519987 FASTQ S21_L006_R2 unaligned CPTAC3 cbe87ee5-b45b-41f0-9a70-0b3ed678013a 8a5206d8a40f6c19ff4f602fe1a4abd8 {"aliquot_tag": "ALQ_c72b1cb5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.RNA-Seq.transcriptome.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.transcriptome.gdc_realn.bam 12432280891 BAM transcriptome harmonized CPTAC3 c993364e-ea71-4647-be46-d96c84c198b4 38ff2bb6581e65bafc1014e2045667e7 {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.WGS.Nbc C3L-06066 AML WGS buccal_normal CPT0357210003 CPT0357210003.WholeGenome.RP-2158.bam 62584670310 BAM aligned CPTAC3 3254a2b2-7ca8-4335-a5ac-d042c99b3d23 158eaeeef6b4b7461813ad45cc34b40b {"aliquot_tag": "ALQ_45ac8ae3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06066.WGS.Nbc.hg38 C3L-06066 AML WGS buccal_normal CPT0357210003 715ad9e3-20b9-4d61-ac08-9e270e702221_wgs_gdc_realn.bam 187368132645 BAM harmonized CPTAC3 f015cef4-ab99-40e9-8dcc-17dd4af0bbb4 febfad9a8de017901b69ae5a1bd7f963 {"aliquot_tag": "ALQ_45ac8ae3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06066.WGS.Tbm C3L-06066 AML WGS tumor_bone_marrow CPT0357240002 CPT0357240002.WholeGenome.RP-2158.bam 46720735315 BAM aligned CPTAC3 a2c661e4-9409-4084-ab6b-77d736af6b4c 6789f53a73335a9daf11808381fb6672 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.WGS.Tbm.hg38 C3L-06066 AML WGS tumor_bone_marrow CPT0357240002 d00c0f65-d9dd-43d0-adb6-d3dd41f03940_wgs_gdc_realn.bam 141804091849 BAM harmonized CPTAC3 ef8c9afd-27b8-4c74-abda-f2a080cbe817 aa196d974718a88438cea144ba530737 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.WXS.Tbm C3L-06066 AML WXS tumor_bone_marrow CPT0357240002 CPT0357240002.WholeExome.RP-1303.bam 25806421192 BAM aligned CPTAC3 447f6532-6aac-471b-9ec4-c058e4e3508b 6170bbd9ddcf95c5bee50e675adc91c4 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06066.WXS.Tbm.hg38 C3L-06066 AML WXS tumor_bone_marrow CPT0357240002 d00c0f65-d9dd-43d0-adb6-d3dd41f03940_wxs_gdc_realn.bam 35975603903 BAM harmonized CPTAC3 d306a386-fbc8-4b3c-aaba-62bafef3fc4f 505d57cef384aa54bfd0cab30c25bac6 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.MethArray.Green.Tbm C3L-06067 AML Methylation_Array tumor_bone_marrow CPT0326980002 205555390164_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e740268d-b2cb-47ad-9dce-d477a604a168 4626bf80eb40376bd8287324c3634ad0 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.MethArray.Red.Tbm C3L-06067 AML Methylation_Array tumor_bone_marrow CPT0326980002 205555390164_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 7cbdb029-d1f6-4df2-a32c-f92dfcfab352 57d3e963448a6a9101312846de0fcb33 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.miRNA-Seq.S38_L008_R1.Tbm C3L-06067 AML miRNA-Seq tumor_bone_marrow CPT0326990002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAAAAG_S38_L008_R1_001.unaln.bam 250003310 BAM S38_L008_R1 unaligned CPTAC3 a57f59e0-0e1d-4bcc-a6f5-a0e3ad4df017 48f248e664d1ae8847c05b8725ec394b {"aliquot_tag": "ALQ_c4ae03da", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.miRNA-Seq.Tbm.hg38 C3L-06067 AML miRNA-Seq tumor_bone_marrow CPT0326990002 0ff47398-678b-4d0e-8763-f24dbcbe9edf_mirnaseq_gdc_realn.bam 260044163 BAM harmonized CPTAC3 a9d7f8e6-f149-4738-b29b-60e892d1518d e49ae0726bbdd04dc47458b45c874e30 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.RNA-Seq.chimeric.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.chimeric.gdc_realn.bam 130652719 BAM chimeric harmonized CPTAC3 cdb54dcc-c900-4bb2-b32b-7265c2b84e7e 2d7ff1fbc73be16976fc99c76bb81919 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.RNA-Seq.genomic.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.genomic.gdc_realn.bam 5793716140 BAM genomic harmonized CPTAC3 76fdcab6-4430-4d0f-8ce3-b9a9f8b2e543 1b66b24d6a051d3bdd73de89c54c5f42 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.RNA-Seq.S7_L002_R1.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R1_001.fastq.gz 2916957806 FASTQ S7_L002_R1 unaligned CPTAC3 89954f3c-da45-438a-b8a2-7dc1ad42230c 26dfc5c5b58d5d860460f09156127f35 {"aliquot_tag": "ALQ_c4ae03da", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.RNA-Seq.S7_L002_R2.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R2_001.fastq.gz 3143692869 FASTQ S7_L002_R2 unaligned CPTAC3 65b1537c-fbda-4372-b0a8-e3d8439618ac bd0d0e84d5c5fe95a89e7f5eaf59a31d {"aliquot_tag": "ALQ_c4ae03da", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.RNA-Seq.transcriptome.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.transcriptome.gdc_realn.bam 9999522708 BAM transcriptome harmonized CPTAC3 4a0d208c-d235-4959-868f-5b67def35068 f48f2d5b6903e1aa67b84089ad117124 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.WGS.Nbc C3L-06067 AML WGS buccal_normal CPT0327010002 CPT0327010002.WholeGenome.RP-2158.bam 63299846865 BAM aligned CPTAC3 80171bd1-5ae0-419a-8bec-e17eb811e481 c323e8e2b15019f5e050a67165d74b15 {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06067.WGS.Nbc.hg38 C3L-06067 AML WGS buccal_normal CPT0327010002 cb29e5c2-b79b-4190-b779-a0279f80e165_wgs_gdc_realn.bam 190916611988 BAM harmonized CPTAC3 dfd184ff-b179-4ab5-9587-83ed28776f05 1a0500ea36a7d6746e290e484bc1c2d5 {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06067.WGS.Tbm C3L-06067 AML WGS tumor_bone_marrow CPT0326980002 CPT0326980002.WholeGenome.RP-2158.bam 51421134127 BAM aligned CPTAC3 7c2f50d9-3ffa-41c3-9a44-0ab9fbaaa51e 622147b8d426a0eb74e2130c579cee75 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.WGS.Tbm.hg38 C3L-06067 AML WGS tumor_bone_marrow CPT0326980002 f522dd61-ba96-4a7c-b014-8702b6f2f61d_wgs_gdc_realn.bam 152940156602 BAM harmonized CPTAC3 7fa81a7c-59ad-4ece-a675-850df0bae7c2 59c56d14f2d16d4b48f122b55766c7da {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.WXS.Nbc C3L-06067 AML WXS buccal_normal CPT0327010002 CPT0327010002.WholeExome.RP-1303.bam 28138809935 BAM aligned CPTAC3 d2fcb3e6-ffa5-46dc-bac5-98b460e0110a 8beb61b3c7fe37622c55b6b384088b9a {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06067.WXS.Nbc.hg38 C3L-06067 AML WXS buccal_normal CPT0327010002 cb29e5c2-b79b-4190-b779-a0279f80e165_wxs_gdc_realn.bam 38364605151 BAM harmonized CPTAC3 57e18e83-d70b-4032-8ffd-f1406162100c 7b0a1a88edaf3b3a23b0ef97dd933fd2 {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06067.WXS.Tbm C3L-06067 AML WXS tumor_bone_marrow CPT0326980002 CPT0326980002.WholeExome.RP-1303.bam 27141790097 BAM aligned CPTAC3 325a8e13-4f00-4e59-b48c-6731edc1a592 dfc9892184da832ca3648d5a243fb0c1 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06067.WXS.Tbm.hg38 C3L-06067 AML WXS tumor_bone_marrow CPT0326980002 f522dd61-ba96-4a7c-b014-8702b6f2f61d_wxs_gdc_realn.bam 36584986067 BAM harmonized CPTAC3 0efcd816-766f-4cdb-b30e-1c99b7818e59 a54ee08d2a4afe7525952924228410e5 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.MethArray.Green.Tbm C3L-06068 AML Methylation_Array tumor_bone_marrow CPT0326620002 205555390164_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6e81144c-4ae5-4d68-85c1-9b9a35a28f4c 3d1d688483357555deed93a1e557a00b {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.MethArray.Red.Tbm C3L-06068 AML Methylation_Array tumor_bone_marrow CPT0326620002 205555390164_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 5e7e816b-dcd5-4f14-ac05-ff6788bfdee7 854a0554d0700777caf7fe84411fa978 {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.miRNA-Seq.S35_L008_R1.Tbm C3L-06068 AML miRNA-Seq tumor_bone_marrow CPT0326630002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACTGAT_S35_L008_R1_001.unaln.bam 324256416 BAM S35_L008_R1 unaligned CPTAC3 ff8b73ac-dbd5-45b9-b196-ec0f48c0c007 42abbf8fe675491f980ccc0a623e4330 {"aliquot_tag": "ALQ_7f48a9ae", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.miRNA-Seq.Tbm.hg38 C3L-06068 AML miRNA-Seq tumor_bone_marrow CPT0326630002 aa56926f-e975-4d12-888c-58b27cdef030_mirnaseq_gdc_realn.bam 337334228 BAM harmonized CPTAC3 10ade2b7-5023-4003-a46b-3279db2e5712 b1c0ee0f9faeff5dc4add8c47943b1ae {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.RNA-Seq.chimeric.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.chimeric.gdc_realn.bam 178792879 BAM chimeric harmonized CPTAC3 b118a971-9f6b-4625-95d2-79a7247407ca 03df04b29a02d29be35c9fcfbf6eeb63 {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.RNA-Seq.genomic.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.genomic.gdc_realn.bam 6844058343 BAM genomic harmonized CPTAC3 3ad851fa-7d91-45fd-b114-80243f1e04df ff94a2f54a2df16f3fcb11d0f00d0f93 {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.RNA-Seq.S6_L002_R1.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R1_001.fastq.gz 3486498695 FASTQ S6_L002_R1 unaligned CPTAC3 3c677a8d-3ac0-4ae0-abb2-c7df39a91396 a10bca04a94ebee138fbe9f3fc1e608f {"aliquot_tag": "ALQ_7f48a9ae", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.RNA-Seq.S6_L002_R2.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R2_001.fastq.gz 3686557876 FASTQ S6_L002_R2 unaligned CPTAC3 595a29b0-a6b9-4462-b007-c0bbaa069d36 c7dd4500cf03b095720405917f3281db {"aliquot_tag": "ALQ_7f48a9ae", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.RNA-Seq.transcriptome.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.transcriptome.gdc_realn.bam 10250119743 BAM transcriptome harmonized CPTAC3 fc3d5db8-4296-4def-8eb0-6f133f58890d 3252c1f068705d8d2ccff34ad63c0e8d {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.WGS.Nbc C3L-06068 AML WGS buccal_normal CPT0326720003 CPT0326720003.WholeGenome.RP-2158.bam 49640336441 BAM aligned CPTAC3 a7cfe390-04fe-4688-85fe-267603eea235 deb843257083fa909f2f0fc18bdd6abd {"aliquot_tag": "ALQ_fe73632d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06068.WGS.Nbc.hg38 C3L-06068 AML WGS buccal_normal CPT0326720003 97ab5be9-f390-43ec-8d39-bdd5dbfb42fd_wgs_gdc_realn.bam 146224563454 BAM harmonized CPTAC3 f1b8e0e8-78c2-4480-b230-d7d243dcae43 8d87540f830386555badfef8b11d308e {"aliquot_tag": "ALQ_fe73632d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06068.WGS.Tbm C3L-06068 AML WGS tumor_bone_marrow CPT0326620002 CPT0326620002.WholeGenome.RP-2158.bam 47741264692 BAM aligned CPTAC3 8f7b43f4-955f-47ed-b1c0-1d3c213960c5 efd1b6e3064740691296088b7a760bf9 {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.WGS.Tbm.hg38 C3L-06068 AML WGS tumor_bone_marrow CPT0326620002 c8241e1e-f164-4510-9868-d017ca302616_wgs_gdc_realn.bam 141454550444 BAM harmonized CPTAC3 aa7b5688-3e56-4228-becf-ccb94c76f378 78ccbb6be2c6d8932e1192d2efd02948 {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.WXS.Tbm C3L-06068 AML WXS tumor_bone_marrow CPT0326620002 CPT0326620002.WholeExome.RP-1303.bam 25131898026 BAM aligned CPTAC3 705d0735-bf87-40f6-b451-02f29f4e7920 ff4e2f156d956f2862bc3edc7feadd3b {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06068.WXS.Tbm.hg38 C3L-06068 AML WXS tumor_bone_marrow CPT0326620002 c8241e1e-f164-4510-9868-d017ca302616_wxs_gdc_realn.bam 34521151968 BAM harmonized CPTAC3 dfc4764a-1578-4e82-afad-b6f49abf1732 63ded636c7129e529f737aa6fbc2caaf {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.MethArray.Green.Tbm C3L-06069 AML Methylation_Array tumor_bone_marrow CPT0326480002 205555390174_R04C01_Grn.idat 13677965 IDAT Green NA CPTAC3 13d7236e-23d9-4789-9b51-b869a122087a b03c56c6969c0c8451ba7e4a1ac00c2f {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.MethArray.Red.Tbm C3L-06069 AML Methylation_Array tumor_bone_marrow CPT0326480002 205555390174_R04C01_Red.idat 13677965 IDAT Red NA CPTAC3 895e134f-9e5b-4960-a188-7f2e23583831 796be5c959b7d86b71cfd710c1bfb275 {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.miRNA-Seq.S54_L008_R1.Tbm C3L-06069 AML miRNA-Seq tumor_bone_marrow CPT0326490002 210331_UNC31-K00269_0297_AHKCFKBBXY_GGTAGC_S54_L008_R1_001.unaln.bam 417794877 BAM S54_L008_R1 unaligned CPTAC3 78e537d0-0ca0-497a-98d1-96ba73ff6676 230a7dbc4e4b10f9d5a0f4348d1e6146 {"aliquot_tag": "ALQ_78301004", "sample": "S54", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.miRNA-Seq.Tbm.hg38 C3L-06069 AML miRNA-Seq tumor_bone_marrow CPT0326490002 03604858-e119-48f8-a163-cd958b763427_mirnaseq_gdc_realn.bam 442088582 BAM harmonized CPTAC3 e97a811f-3ded-4679-bcbb-1d509fa0756d b7fa6aa0c5eece9a41bfdff7eda0cd52 {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.RNA-Seq.chimeric.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.chimeric.gdc_realn.bam 162952070 BAM chimeric harmonized CPTAC3 9fa49615-8105-45d6-81aa-351d697a4cc0 c12def11978125440512d7213041e97d {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.RNA-Seq.genomic.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.genomic.gdc_realn.bam 7143808309 BAM genomic harmonized CPTAC3 b9b615dc-3e66-4d8d-9fad-87b72c3a3df3 7c37ef28cbdd923dad6c9dcc030de9c2 {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.RNA-Seq.S12_L003_R1.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R1_001.fastq.gz 3577663162 FASTQ S12_L003_R1 unaligned CPTAC3 09a525b6-cb9f-43eb-9c3c-a1a77e10456c 4b94abcc256d4e1148c37ca3687b1891 {"aliquot_tag": "ALQ_78301004", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.RNA-Seq.S12_L003_R2.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R2_001.fastq.gz 3899204966 FASTQ S12_L003_R2 unaligned CPTAC3 8a9086a9-e3d9-408d-aeb8-162c800d364c 765ee9118d2efb5e5c1820776c160d58 {"aliquot_tag": "ALQ_78301004", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.RNA-Seq.transcriptome.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.transcriptome.gdc_realn.bam 9747365613 BAM transcriptome harmonized CPTAC3 1cd2e81c-cbf3-4a27-8fb0-ed486d2b00dc 6a75328dc3c95ffa80541f56bad725a1 {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.WGS.Nbc C3L-06069 AML WGS buccal_normal CPT0326580003 CPT0326580003.WholeGenome.RP-2158.bam 53615171679 BAM aligned CPTAC3 e3cfe7e9-6e50-42fc-929d-bf43b981e320 dffe1549bd1f691e2b2fcdc782f5e6aa {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06069.WGS.Nbc.hg38 C3L-06069 AML WGS buccal_normal CPT0326580003 f15999aa-0027-403b-a9fc-a857a8d6a6f9_wgs_gdc_realn.bam 151945577645 BAM harmonized CPTAC3 fdc8d9db-7c70-44f3-b4bf-79729d61e81e f187987b67452499c0ee77c5dd086bdc {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06069.WGS.Tbm C3L-06069 AML WGS tumor_bone_marrow CPT0326480002 CPT0326480002.WholeGenome.RP-2158.bam 46010740514 BAM aligned CPTAC3 9a18c80e-e80d-4cbc-86df-0657b38f6ac2 139effafd536f80fe3d845fdc987b094 {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.WGS.Tbm.hg38 C3L-06069 AML WGS tumor_bone_marrow CPT0326480002 06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wgs_gdc_realn.bam 134457839495 BAM harmonized CPTAC3 6479fcbc-6431-49c3-bb94-71a681a7438f 32fab0d1c87f0b2eb06027199a69a91a {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.WXS.Nbc C3L-06069 AML WXS buccal_normal CPT0326580003 CPT0326580003.WholeExome.RP-1303.bam 18561670905 BAM aligned CPTAC3 9252d635-14f8-43ad-ad52-ee7f5cca3939 fded3cd361beec1bd499927deab16cb9 {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06069.WXS.Nbc.hg38 C3L-06069 AML WXS buccal_normal CPT0326580003 f15999aa-0027-403b-a9fc-a857a8d6a6f9_wxs_gdc_realn.bam 26206772341 BAM harmonized CPTAC3 0bc45139-a05c-4cb0-bbf0-3218db271cdb 7a67672061108ec8624ce67995e8c977 {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06069.WXS.Tbm C3L-06069 AML WXS tumor_bone_marrow CPT0326480002 CPT0326480002.WholeExome.RP-1303.bam 25721247083 BAM aligned CPTAC3 8aa1f14e-449e-4d81-8958-07b59ac5be6d df12918bccbb89aa8afd50445dbd4edd {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06069.WXS.Tbm.hg38 C3L-06069 AML WXS tumor_bone_marrow CPT0326480002 06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wxs_gdc_realn.bam 35693747490 BAM harmonized CPTAC3 ea93f57a-46ae-421b-9902-3cb89ecb4202 029109bbb29ad8310c1f553eec8d49a4 {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.MethArray.Green.Tbm C3L-06070 AML Methylation_Array tumor_bone_marrow CPT0326140002 205555380155_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 eb56e03b-a2b8-4e1d-9089-58464e359ed3 39e095bcdabe469d26c1798931caa512 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.MethArray.Red.Tbm C3L-06070 AML Methylation_Array tumor_bone_marrow CPT0326140002 205555380155_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 9a1c1f96-c8a3-48fb-bd1d-a69b2921d08a 4636dadd45351367a3b1f16be0ec94f9 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.miRNA-Seq.S48_L008_R1.Tbm C3L-06070 AML miRNA-Seq tumor_bone_marrow CPT0326150002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGTACG_S48_L008_R1_001.unaln.bam 249608659 BAM S48_L008_R1 unaligned CPTAC3 50e7cc38-f5dc-4a66-897b-3785cf126440 5bbf63ea2cbdc495c5760d7f00d042ae {"aliquot_tag": "ALQ_ed0d6cb6", "sample": "S48", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.miRNA-Seq.Tbm.hg38 C3L-06070 AML miRNA-Seq tumor_bone_marrow CPT0326150002 d276219f-aabe-4991-926e-cecbb171f87a_mirnaseq_gdc_realn.bam 261877772 BAM harmonized CPTAC3 43c1b86e-e24f-410b-a2c1-bb51a62f1e9d 8742bcc7d33adc40ae99d28b4cd3c44e {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.RNA-Seq.chimeric.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.chimeric.gdc_realn.bam 98661132 BAM chimeric harmonized CPTAC3 e855020c-e8d1-4cdf-b6ea-c76be592be4c eb8e79977023ee560a8d731457d2bcad {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.RNA-Seq.genomic.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.genomic.gdc_realn.bam 6510103232 BAM genomic harmonized CPTAC3 07f94ba3-56e7-4258-8b07-813bf2ba8c45 6afec7b17187577c68bb839e1b1ef046 {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.RNA-Seq.S10_L003_R1.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R1_001.fastq.gz 3218158809 FASTQ S10_L003_R1 unaligned CPTAC3 e971ec7c-cdd4-4dc7-a1fc-4441d77fefc9 b7bf196035031901bf88e90fec032c00 {"aliquot_tag": "ALQ_ed0d6cb6", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.RNA-Seq.S10_L003_R2.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R2_001.fastq.gz 3422155076 FASTQ S10_L003_R2 unaligned CPTAC3 ff2b4fc1-70a1-4d38-86a8-672a3a312966 ab10dc44806219cb7e6d648a999e0f8c {"aliquot_tag": "ALQ_ed0d6cb6", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.RNA-Seq.transcriptome.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.transcriptome.gdc_realn.bam 9383974723 BAM transcriptome harmonized CPTAC3 e9f168da-7a43-4379-a6cf-8df39e8b149b b8af96720959fe2fc274848445ae6ed0 {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.WGS.Nbc C3L-06070 AML WGS buccal_normal CPT0326190002 CPT0326190002.WholeGenome.RP-2158.bam 59284431351 BAM aligned CPTAC3 77318481-475e-4851-a40d-4552f4fabe95 cdb341b276bbbbc10b6ac4d1401f2bc7 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06070.WGS.Nbc.hg38 C3L-06070 AML WGS buccal_normal CPT0326190002 6152d143-77fc-469a-825a-cc922a7793c3_wgs_gdc_realn.bam 180241304280 BAM harmonized CPTAC3 f3180940-67d0-4bcf-8e9a-0ddb4e4936c7 1d4bc4f9ff3d501fa8117cd5111873d9 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06070.WGS.Tbm C3L-06070 AML WGS tumor_bone_marrow CPT0326140002 CPT0326140002.WholeGenome.RP-2158.bam 58632330587 BAM aligned CPTAC3 4b2e026e-f472-49ff-89d5-c2f3d62f314f f91809af37e65042bbe1064b5fdc2fbf {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.WGS.Tbm.hg38 C3L-06070 AML WGS tumor_bone_marrow CPT0326140002 9107763d-3224-4001-960a-ffe32c9e53eb_wgs_gdc_realn.bam 176373227224 BAM harmonized CPTAC3 c3419350-e9c5-489f-beec-f35203a5c2a4 ecf42432721e187c66d6b76f672af609 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.WXS.Nbc C3L-06070 AML WXS buccal_normal CPT0326190002 CPT0326190002.WholeExome.RP-1303.bam 24159633216 BAM aligned CPTAC3 f0fead0b-d30a-4d7a-9718-6f06e4a2d027 8122204e3a830ad4b612216a638e5444 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06070.WXS.Nbc.hg38 C3L-06070 AML WXS buccal_normal CPT0326190002 6152d143-77fc-469a-825a-cc922a7793c3_wxs_gdc_realn.bam 33494030818 BAM harmonized CPTAC3 b11b88a5-4c4a-437d-8d74-99bdc25e5cfa 3e5e360d876666db56aca20e57e2dbb8 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06070.WXS.Tbm C3L-06070 AML WXS tumor_bone_marrow CPT0326140002 CPT0326140002.WholeExome.RP-1303.bam 19926201297 BAM aligned CPTAC3 f5470787-646e-412f-84d8-03c775e68630 f6783bd386e15cf0defe38d421c00423 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06070.WXS.Tbm.hg38 C3L-06070 AML WXS tumor_bone_marrow CPT0326140002 9107763d-3224-4001-960a-ffe32c9e53eb_wxs_gdc_realn.bam 27486888087 BAM harmonized CPTAC3 b7b34294-8591-486f-98ed-da7a388edb83 41ba9b39ed0cdbc6b1ce56dd1c22b847 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06072.MethArray.Green.Tpb C3L-06072 AML Methylation_Array tumor_peripheral_blood CPT0369720002 205987780094_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 45add882-c9de-4103-aad4-b0d833abaab2 8acfea16d765bc9e0d0b565caca9eca3 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.MethArray.Red.Tpb C3L-06072 AML Methylation_Array tumor_peripheral_blood CPT0369720002 205987780094_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 4e3b3f20-b307-4c1a-97d3-29bc30b531f4 6e6d809104eea93edbac3a5118e1da76 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.miRNA-Seq.S44_L003_R1.Tpb C3L-06072 AML miRNA-Seq tumor_peripheral_blood CPT0369760002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATTCCT_S44_L003_R1_001.unaln.bam 230490283 BAM S44_L003_R1 unaligned CPTAC3 7f452937-e23d-469e-b23b-691129d3eee2 8b7a1a075ab33d8ee775336f692283b7 {"aliquot_tag": "ALQ_ef68b68", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.miRNA-Seq.Tpb.hg38 C3L-06072 AML miRNA-Seq tumor_peripheral_blood CPT0369760002 1b5999d5-1657-49f5-9e1e-6f63b3b2f985_mirnaseq_gdc_realn.bam 257242713 BAM harmonized CPTAC3 d58a4c3d-6b12-4fd1-843c-1e54dd4fb114 f7b6673b942a2752ed1250a67de24314 {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.RNA-Seq.chimeric.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.chimeric.gdc_realn.bam 689476770 BAM chimeric harmonized CPTAC3 a8188303-df13-4a4f-8bc8-1ee3084be6d7 d85d34c65de18f0f814a6261e6a5982a {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.RNA-Seq.genomic.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.genomic.gdc_realn.bam 7069676273 BAM genomic harmonized CPTAC3 40219852-bc64-4e7a-a575-13ec182a8d4b cef290d26af6de33ac9ec8ec8ff0b048 {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.RNA-Seq.S22_L006_R1.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R1_001.fastq.gz 3545686367 FASTQ S22_L006_R1 unaligned CPTAC3 82b7f51d-b538-4767-ae05-11d9894594c6 ea053998f8a0b265cf3cb12fb049c6c1 {"aliquot_tag": "ALQ_ef68b68", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.RNA-Seq.S22_L006_R2.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R2_001.fastq.gz 3805050664 FASTQ S22_L006_R2 unaligned CPTAC3 e54968f4-2495-4405-970e-709db0d36a14 c49af4598946a796365dd05375471f7b {"aliquot_tag": "ALQ_ef68b68", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.RNA-Seq.transcriptome.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.transcriptome.gdc_realn.bam 7349539022 BAM transcriptome harmonized CPTAC3 e70d33dc-1c28-4982-a883-f65ceb383e7f b0e03f140e140cd3abba84f682eb70d2 {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.WGS.Nbc C3L-06072 AML WGS buccal_normal CPT0369690002 CPT0369690002.WholeGenome.RP-2158.bam 48083145421 BAM aligned CPTAC3 02b0ac20-961f-4935-9e53-42175deef4a8 501a0de9f6dcfc06628dca2a58e3acbd {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06072.WGS.Nbc.hg38 C3L-06072 AML WGS buccal_normal CPT0369690002 1adf12e4-ba45-415f-865f-d7974cd71439_wgs_gdc_realn.bam 148315312881 BAM harmonized CPTAC3 343a85c3-aea3-4ca6-88e8-dadeff887a4f 0281d8b03ea5e45526ea40f70f72e4d9 {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06072.WGS.Tpb C3L-06072 AML WGS tumor_peripheral_blood CPT0369720002 CPT0369720002.WholeGenome.RP-2158.bam 44094742886 BAM aligned CPTAC3 12d512ce-c923-41e7-8fdb-d5865160784a a5de1a0a65d273e58de4b42c94b6d036 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.WGS.Tpb.hg38 C3L-06072 AML WGS tumor_peripheral_blood CPT0369720002 119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wgs_gdc_realn.bam 127936543010 BAM harmonized CPTAC3 d89ac0df-eada-4938-9b40-4ff3515eacdb 7e8f9e6305902612127349a429a969b4 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.WXS.Nbc C3L-06072 AML WXS buccal_normal CPT0369690002 CPT0369690002.WholeExome.RP-1303.bam 17868360061 BAM aligned CPTAC3 c345bc99-53dc-4348-8e44-f439c2e8662c 9dbfd85bbbf4f2aab175604d66791b13 {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06072.WXS.Nbc.hg38 C3L-06072 AML WXS buccal_normal CPT0369690002 1adf12e4-ba45-415f-865f-d7974cd71439_wxs_gdc_realn.bam 24287119355 BAM harmonized CPTAC3 dedd32c0-3e63-45e0-ad49-7f74153a9cf4 f3f03030800d7f8f69277905136b9a3a {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06072.WXS.Tpb C3L-06072 AML WXS tumor_peripheral_blood CPT0369720002 CPT0369720002.WholeExome.RP-1303.bam 28161962560 BAM aligned CPTAC3 7e180b43-4504-4b6b-be9b-ff2cd0161603 bbcf589d13f4009e52ca64b18bf83e19 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06072.WXS.Tpb.hg38 C3L-06072 AML WXS tumor_peripheral_blood CPT0369720002 119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wxs_gdc_realn.bam 39063588272 BAM harmonized CPTAC3 8d6dce3c-9f69-461b-83c8-2b752452b7e9 0c43bddcf6024ced980d4ee53fea26b5 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06073.MethArray.Green.Tbm C3L-06073 AML Methylation_Array tumor_bone_marrow CPT0370690002 205589730156_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0c9edc91-6d3a-4345-9179-1d85b4c11a2b ac6ef59bea60a1cdf24ac275434b108b {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.MethArray.Red.Tbm C3L-06073 AML Methylation_Array tumor_bone_marrow CPT0370690002 205589730156_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 f007e836-4264-4498-85c2-8b708b9534d7 701b79ffd139bce224b44c36a74db019 {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.miRNA-Seq.S19_L007_R1.Tbm C3L-06073 AML miRNA-Seq tumor_bone_marrow CPT0370670002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATGTCA_S19_L007_R1_001.unaln.bam 303050518 BAM S19_L007_R1 unaligned CPTAC3 b1fbfb30-9556-4f6e-86d9-ea0d536f00ce 314af9b49d4c443ab11015d73b1da4ac {"aliquot_tag": "ALQ_a1f83430", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.miRNA-Seq.Tbm.hg38 C3L-06073 AML miRNA-Seq tumor_bone_marrow CPT0370670002 5b95bda9-07f4-4185-985f-3a8ad47e52f9_mirnaseq_gdc_realn.bam 317823474 BAM harmonized CPTAC3 aac09fe7-5154-4c95-ad04-ffc53a178015 4adab3cff5126ec17dbf21363ef973ff {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.RNA-Seq.chimeric.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.chimeric.gdc_realn.bam 149127548 BAM chimeric harmonized CPTAC3 8ded26a0-2057-47f9-ad11-27781abcc042 3aaa899061e7ee49c9336ff3648d3178 {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.RNA-Seq.genomic.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.genomic.gdc_realn.bam 8159541327 BAM genomic harmonized CPTAC3 0e006dbd-8126-4768-ae4f-68e477a864ff 0d1d9720b01c8562482a4c37c09fa3dc {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.RNA-Seq.S59_L007_R1.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R1_001.fastq.gz 3936008383 FASTQ S59_L007_R1 unaligned CPTAC3 2a9f2071-6f43-42f7-8e78-249b76c494bb 0013d998a32202e736c8285e569a3bb8 {"aliquot_tag": "ALQ_a1f83430", "sample": "S59", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.RNA-Seq.S59_L007_R2.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R2_001.fastq.gz 4254043495 FASTQ S59_L007_R2 unaligned CPTAC3 f74e6b9e-cdcf-4669-bf48-e344ed3459c6 eae15dc5faf02596f3f9ab6c70261b6b {"aliquot_tag": "ALQ_a1f83430", "sample": "S59", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.RNA-Seq.transcriptome.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.transcriptome.gdc_realn.bam 10506542454 BAM transcriptome harmonized CPTAC3 9a0cd4dc-8f8a-476e-841b-66318862ca14 02243b7187ce562d4d1ddce5fe6fc979 {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.WGS.Tbm C3L-06073 AML WGS tumor_bone_marrow CPT0370690002 CPT0370690002.WholeGenome.RP-2158.bam 46725454089 BAM aligned CPTAC3 5aee57d2-538f-436f-8298-7c0dc829503a 0b5dc54f6c2a716f8e3c160f04f297d1 {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.WGS.Tbm.hg38 C3L-06073 AML WGS tumor_bone_marrow CPT0370690002 f84701f0-bcab-4379-a4f2-8bfa19021e41_wgs_gdc_realn.bam 131703064864 BAM harmonized CPTAC3 c964a957-b63d-4618-86bd-2a8e90f71c0e 7b126d6b6080b94e1299e5acd39bec8b {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.WXS.Tbm C3L-06073 AML WXS tumor_bone_marrow CPT0370690002 CPT0370690002.WholeExome.RP-1303.bam 26251193354 BAM aligned CPTAC3 7d0adb08-2199-4486-a573-8d796ca62454 b18f1061a0fdfe93da1615726229091e {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06073.WXS.Tbm.hg38 C3L-06073 AML WXS tumor_bone_marrow CPT0370690002 f84701f0-bcab-4379-a4f2-8bfa19021e41_wxs_gdc_realn.bam 36475108386 BAM harmonized CPTAC3 0997eeba-f60e-4798-a07d-eac375e57f22 596303d71def176602cb9b4691a6ab8c {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06074.MethArray.Green.Tpb C3L-06074 AML Methylation_Array tumor_peripheral_blood CPT0371170002 205987780161_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ac74f9e7-f536-4592-b32d-26873823a5ec 235c1890f34c638607441953af495cb8 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.MethArray.Red.Tpb C3L-06074 AML Methylation_Array tumor_peripheral_blood CPT0371170002 205987780161_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 7e647122-2a7f-4a9f-9f35-1a930bbb9f9e 3adbe788bd135485270cb2b9abaa5ea6 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.miRNA-Seq.S26_L002_R1.Tpb C3L-06074 AML miRNA-Seq tumor_peripheral_blood CPT0371180002 220125_UNC32-K00270_0311_AHMNYYBBXY_AGTTCC_S26_L002_R1_001.unaln.bam 263702724 BAM S26_L002_R1 unaligned CPTAC3 1f8d8125-4187-42f7-b0fc-554cae6a7f5c 61de3e81bf892e5d8ffefe03df209b60 {"aliquot_tag": "ALQ_98da98ed", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.miRNA-Seq.Tpb.hg38 C3L-06074 AML miRNA-Seq tumor_peripheral_blood CPT0371180002 38d40788-7809-490e-ad9f-fd87b2851b08_mirnaseq_gdc_realn.bam 284493058 BAM harmonized CPTAC3 fc6ef094-8f18-4ddc-8ac7-b63a8dd1c74c fc374afe91984484a17aeb8fc0d10df7 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.RNA-Seq.chimeric.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.chimeric.gdc_realn.bam 587695400 BAM chimeric harmonized CPTAC3 d405560d-5d67-4133-b083-5d9b2aed759e 94fd597083f25a7675540297512ae470 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.RNA-Seq.genomic.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.genomic.gdc_realn.bam 8801923084 BAM genomic harmonized CPTAC3 d51c77a9-8d6a-4849-baf0-09440f07ef5a 565c5fa8f9dfc889e6872164e9140476 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.RNA-Seq.S5_L002_R1.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4499840671 FASTQ S5_L002_R1 unaligned CPTAC3 50dd645d-18fe-47a6-9c84-3ab2cc4920cf 3a78a779f7ae6b75cd723ac1d0fd9dd8 {"aliquot_tag": "ALQ_98da98ed", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.RNA-Seq.S5_L002_R2.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4669385308 FASTQ S5_L002_R2 unaligned CPTAC3 1454570b-74ec-4b94-8d48-7c72d5f8470b 402d46096c60a1e8bbcbb6425fd5c1ff {"aliquot_tag": "ALQ_98da98ed", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.RNA-Seq.transcriptome.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.transcriptome.gdc_realn.bam 9653949922 BAM transcriptome harmonized CPTAC3 674f108b-4f64-453b-bfc8-370fb2e09dca c37c7cf3579b7bfc28ded94a721f3d97 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.WGS.Nbc C3L-06074 AML WGS buccal_normal CPT0371120002 CPT0371120002.WholeGenome.RP-2158.bam 59291864171 BAM aligned CPTAC3 3ee87649-29cb-42bc-b8c4-0aab8d99c6bc 1319af1b8f638017cbe239f87e646228 {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06074.WGS.Nbc.hg38 C3L-06074 AML WGS buccal_normal CPT0371120002 af33e386-18b7-4f20-85f9-5bb0131d9b0a_wgs_gdc_realn.bam 170347703859 BAM harmonized CPTAC3 d389e536-718a-4c9c-99c7-8301baa0fd09 020ea8f392e16d92ec11057b695ca72e {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06074.WGS.Tpb C3L-06074 AML WGS tumor_peripheral_blood CPT0371170002 CPT0371170002.WholeGenome.RP-2158.bam 43977145645 BAM aligned CPTAC3 ffcf686b-8751-4a02-9fe5-d37458f77737 66440d256c7811e162e2823d2bbe426d {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.WGS.Tpb.hg38 C3L-06074 AML WGS tumor_peripheral_blood CPT0371170002 317ae442-efba-4243-814a-09cad953f602_wgs_gdc_realn.bam 367154639935 BAM harmonized CPTAC3 6b02e7e1-703f-44b0-8aa8-f1c52e7788a6 c4f342428b574a110f10c6aacb171dc1 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.WXS.Nbc C3L-06074 AML WXS buccal_normal CPT0371120002 CPT0371120002.WholeExome.RP-1303.bam 25858271266 BAM aligned CPTAC3 3c40f5be-c066-458c-96e7-5dcd1201c1d4 c7c9e73e6122cd1bbb500be2bfe84d3b {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06074.WXS.Nbc.hg38 C3L-06074 AML WXS buccal_normal CPT0371120002 af33e386-18b7-4f20-85f9-5bb0131d9b0a_wxs_gdc_realn.bam 35245093334 BAM harmonized CPTAC3 1b1616ba-b1fd-4f17-9ce9-97fc0d0c1e0f c573a37f86834719a6e0e08a8ec2be9e {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06074.WXS.Tpb C3L-06074 AML WXS tumor_peripheral_blood CPT0371170002 CPT0371170002.WholeExome.RP-1303.bam 26147566435 BAM aligned CPTAC3 8d0da758-9956-4da3-a535-8d1a3ad7346a 18ed7e2bfd3628c3f37b384eef339197 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06074.WXS.Tpb.hg38 C3L-06074 AML WXS tumor_peripheral_blood CPT0371170002 317ae442-efba-4243-814a-09cad953f602_wxs_gdc_realn.bam 36343841110 BAM harmonized CPTAC3 8447e47e-4650-46f1-a31e-4caca566ccf8 3eec4cbc4ff8022890e95959b7a69a54 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.MethArray.Green.Tbm C3L-06075 AML Methylation_Array tumor_bone_marrow CPT0370450002 205707890143_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3c1a90c2-19c4-4bbf-a8f2-a3fb997a853f 713bc541341d6670128c65bbb31ba6b6 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06075.MethArray.Red.Tbm C3L-06075 AML Methylation_Array tumor_bone_marrow CPT0370450002 205707890143_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 27b90e0b-9bb4-46a6-b6de-453351fa733b b9e32a9341e38601a93653738b3eae59 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06075.miRNA-Seq.S4_L001_R1.Tpb C3L-06075 AML miRNA-Seq tumor_peripheral_blood CPT0370460002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACTCA_S4_L001_R1_001.unaln.bam 297094562 BAM S4_L001_R1 unaligned CPTAC3 b0ae9641-ed57-4d52-a9cd-964f75e56450 3e67466f4fcd472f86739b25c90fce1d {"aliquot_tag": "ALQ_d150bc8b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.miRNA-Seq.Tpb.hg38 C3L-06075 AML miRNA-Seq tumor_peripheral_blood CPT0370460002 73fcd7e7-210d-41cf-9943-6be0ad0726b4_mirnaseq_gdc_realn.bam 322035547 BAM harmonized CPTAC3 c6c502bd-6ee4-4bd7-8f57-2e27136ba3b2 06a96fc5e4a40b3c9ce4a7c41fcace08 {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.RNA-Seq.chimeric.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.chimeric.gdc_realn.bam 586713132 BAM chimeric harmonized CPTAC3 95a2b995-2c8a-405d-91f4-43cddc4b9ab9 132b7065a37a27591060341a45f61adf {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.RNA-Seq.genomic.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.genomic.gdc_realn.bam 9264501711 BAM genomic harmonized CPTAC3 2e051787-6872-4fd0-ae1e-2972a73383fe 91c3401c9d9069a87b3ee190d7c2ab23 {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.RNA-Seq.S4_L001_R1.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R1_001.fastq.gz 4001226423 FASTQ S4_L001_R1 unaligned CPTAC3 4d51a2e7-9fda-4770-a77b-c59c840ed0b6 be054814eed9be9d53ccf2288f3c9865 {"aliquot_tag": "ALQ_d150bc8b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.RNA-Seq.S4_L001_R2.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R2_001.fastq.gz 4288087488 FASTQ S4_L001_R2 unaligned CPTAC3 542b3afd-7589-453f-bc59-771b68fe1c25 374390675aedfd2379aad981f0d1b400 {"aliquot_tag": "ALQ_d150bc8b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.RNA-Seq.transcriptome.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.transcriptome.gdc_realn.bam 7491172320 BAM transcriptome harmonized CPTAC3 f69cc1a8-b9a6-477e-b66e-d2bbac34118a de89738e81bf830ea3d293b4e635a7f0 {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06075.WGS.Nbc C3L-06075 AML WGS buccal_normal CPT0370400002 CPT0370400002.WholeGenome.RP-2158.bam 61394930570 BAM aligned CPTAC3 ad6cd4fb-c629-4fb0-a657-91c4034b2286 b794b06473a26143a1e86f0c21df169d {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06075.WGS.Nbc.hg38 C3L-06075 AML WGS buccal_normal CPT0370400002 7ff77494-ebab-43b5-b756-6acd97a90b78_wgs_gdc_realn.bam 203620540701 BAM harmonized CPTAC3 47e8d381-d52d-4117-b450-ab265a010af9 f8b06f18f00a5c85b8782398735a8150 {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06075.WGS.Tbm C3L-06075 AML WGS tumor_bone_marrow CPT0370450002 CPT0370450002.WholeGenome.RP-2158.bam 56099819021 BAM aligned CPTAC3 7d9db5a1-c0db-43d7-96e6-03bbcf6d7837 9527d63392254fbce214020302a1af6e {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06075.WGS.Tbm.hg38 C3L-06075 AML WGS tumor_bone_marrow CPT0370450002 3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wgs_gdc_realn.bam 166584458143 BAM harmonized CPTAC3 17f35cdd-9827-40b2-9f27-f7ff88dbfed0 2fe0a7af7e50cae2f1b340c123f3a867 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06075.WXS.Nbc C3L-06075 AML WXS buccal_normal CPT0370400002 CPT0370400002.WholeExome.RP-1303.bam 29404791979 BAM aligned CPTAC3 ff2a36cf-25f1-4f2b-9fcc-25e3bd686e20 a8fcbc2b58a7def5267e4216df275da6 {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06075.WXS.Nbc.hg38 C3L-06075 AML WXS buccal_normal CPT0370400002 7ff77494-ebab-43b5-b756-6acd97a90b78_wxs_gdc_realn.bam 40422279314 BAM harmonized CPTAC3 6ce214e7-d2a0-407a-9207-88a0bd2e49a6 e92b69a7d2482e7533d750d77b0bc18b {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06075.WXS.Tbm C3L-06075 AML WXS tumor_bone_marrow CPT0370450002 CPT0370450002.WholeExome.RP-1303.bam 27567774244 BAM aligned CPTAC3 612671e0-5738-4fe1-a287-41748647821f 4c068d07f0a9b2c4279969519b005055 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06075.WXS.Tbm.hg38 C3L-06075 AML WXS tumor_bone_marrow CPT0370450002 3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wxs_gdc_realn.bam 38474016924 BAM harmonized CPTAC3 72f599d1-d66b-4db4-bbd6-3cc94517884f 4cdeba3b8a2bd967b9a9fca5293b9f49 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.MethArray.Green.Tbm C3L-06081 AML Methylation_Array tumor_bone_marrow CPT0452610002 205987780161_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a445e029-6ce7-46b5-9f00-a7ed9dcdc441 7410ffbfb43892bfaf766675b6ca0954 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.MethArray.Red.Tbm C3L-06081 AML Methylation_Array tumor_bone_marrow CPT0452610002 205987780161_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 33840893-ed3b-400f-af99-e9426706ab6a 1ddd54f17a286aabc8f50e654c685b27 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.miRNA-Seq.S20_L003_R1.Tbm C3L-06081 AML miRNA-Seq tumor_bone_marrow CPT0452620002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGAAG_S20_L003_R1_001.unaln.bam 184198755 BAM S20_L003_R1 unaligned CPTAC3 5ce1b12c-d601-4a66-95ac-d93757290b03 c46a1cdf50baae1647d90c43dcf0c25c {"aliquot_tag": "ALQ_d8c3c0dd", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.miRNA-Seq.Tbm.hg38 C3L-06081 AML miRNA-Seq tumor_bone_marrow CPT0452620002 19b823fa-2808-4437-ba58-fd7062f10da8_mirnaseq_gdc_realn.bam 210900142 BAM harmonized CPTAC3 46965013-7c4d-46b7-8e17-73c4dfb634f3 78b57e931555520938a1d42cfa7d9195 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.RNA-Seq.chimeric.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.chimeric.gdc_realn.bam 430690606 BAM chimeric harmonized CPTAC3 5c8d1922-1a0f-475e-9af0-89f50d382864 4fbc44ac43dffde6393fa55befbc74c1 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.RNA-Seq.genomic.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.genomic.gdc_realn.bam 9169586737 BAM genomic harmonized CPTAC3 3d5e524a-6724-4aec-99d6-6f86cb1801ae 7be4881f3ec89aa8a2a3c06b9dd4b104 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.RNA-Seq.S5_L002_R1.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R1_001.fastq.gz 4524484967 FASTQ S5_L002_R1 unaligned CPTAC3 27d6ab0a-cbb7-40b9-af9e-a3e7a407b8a7 93468f10f4b484a5d0d6845a939fce8e {"aliquot_tag": "ALQ_d8c3c0dd", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.RNA-Seq.S5_L002_R2.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R2_001.fastq.gz 5017312104 FASTQ S5_L002_R2 unaligned CPTAC3 8f431e06-a2ed-411c-834b-ac6573ec6994 59788e71abe1bdbf316d637c191492e5 {"aliquot_tag": "ALQ_d8c3c0dd", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.RNA-Seq.transcriptome.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.transcriptome.gdc_realn.bam 10236591159 BAM transcriptome harmonized CPTAC3 b12ea9f1-e1e8-4393-9c8c-0073745a8d53 de92789e9f140e3373e342d0768bfe42 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.WGS.Nbc C3L-06081 AML WGS buccal_normal CPT0452580002 CPT0452580002.WholeGenome.RP-2158.bam 40855679386 BAM aligned CPTAC3 e9f5e03e-f8e3-464b-81a8-bb6e9f88f101 f59059b8b17803c6ec1525deea9a4bc6 {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06081.WGS.Nbc.hg38 C3L-06081 AML WGS buccal_normal CPT0452580002 514223c1-3f15-441e-b150-c3ac379276de_wgs_gdc_realn.bam 135193769846 BAM harmonized CPTAC3 c1b6ce2c-5f95-4401-aacf-ba91ba168ea4 beb10e17a44a0cd92a28e72ae78b0a31 {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06081.WGS.Tbm C3L-06081 AML WGS tumor_bone_marrow CPT0452610002 CPT0452610002.WholeGenome.RP-2158.bam 57212987809 BAM aligned CPTAC3 7d8be4b7-e3e2-4bd2-8d7c-a98b9c008459 65e1a32d11b73b62236cbda79f548314 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.WGS.Tbm.hg38 C3L-06081 AML WGS tumor_bone_marrow CPT0452610002 f5223369-0629-49fe-8d6c-168633407e79_wgs_gdc_realn.bam 172146341176 BAM harmonized CPTAC3 8a5d9822-2aac-41de-a04c-3bfcc975bd20 3e1a568d56ee314d9bc9974310fcce89 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.WXS.Nbc C3L-06081 AML WXS buccal_normal CPT0452580002 CPT0452580002.WholeExome.RP-1303.bam 28932454464 BAM aligned CPTAC3 387b4650-d0a7-4ede-a82f-1f43efc58048 5142c1257260f8b8b3fc6e0980d99040 {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06081.WXS.Nbc.hg38 C3L-06081 AML WXS buccal_normal CPT0452580002 514223c1-3f15-441e-b150-c3ac379276de_wxs_gdc_realn.bam 40169047067 BAM harmonized CPTAC3 73f5f03d-516a-46ca-afad-3e1cc385cf4d 34d171051f1ca40d91b0a489d9d6b5ec {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06081.WXS.Tbm C3L-06081 AML WXS tumor_bone_marrow CPT0452610002 CPT0452610002.WholeExome.RP-1303.bam 28667945964 BAM aligned CPTAC3 0a3c2aaa-b04d-49d1-8f65-77c0e96be3e1 a1278e8d358b3409cdd9b018e6295304 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06081.WXS.Tbm.hg38 C3L-06081 AML WXS tumor_bone_marrow CPT0452610002 f5223369-0629-49fe-8d6c-168633407e79_wxs_gdc_realn.bam 39570188846 BAM harmonized CPTAC3 3b620621-8e5f-4c2b-a1bf-700aab00eba9 93b7307fd83c08792d33c84c865c166c {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06082.MethArray.Green.Tbm C3L-06082 AML Methylation_Array tumor_bone_marrow CPT0369940002 205707890036_R08C01_Grn.idat 13677894 IDAT Green NA CPTAC3 b82bcfb5-3345-4510-b91d-d34bba6660b6 76774446993371f9ad8f3b93510b9ddb {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06082.MethArray.Red.Tbm C3L-06082 AML Methylation_Array tumor_bone_marrow CPT0369940002 205707890036_R08C01_Red.idat 13677894 IDAT Red NA CPTAC3 9f69da76-7242-4baf-a539-6ef10b0282fd efb482350258cfff3ce9a6d778f37f88 {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06082.miRNA-Seq.S28_L003_R1.Tpb C3L-06082 AML miRNA-Seq tumor_peripheral_blood CPT0369980002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAACTA_S28_L003_R1_001.unaln.bam 221096532 BAM S28_L003_R1 unaligned CPTAC3 86afc279-e464-42cf-8af0-e07015cd55e4 13a7e01b09b010d5801cb343a88e4c58 {"aliquot_tag": "ALQ_8bcc5479", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06082.miRNA-Seq.Tpb.hg38 C3L-06082 AML miRNA-Seq tumor_peripheral_blood CPT0369980002 1d6aa9ec-fe58-41cc-8803-0452e10cf859_mirnaseq_gdc_realn.bam 245476341 BAM harmonized CPTAC3 3edfc932-3030-447f-9b94-252241f3760c 19e38b90a95d7678e64085c05d44ee92 {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06082.RNA-Seq.chimeric.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.chimeric.gdc_realn.bam 690357928 BAM chimeric harmonized CPTAC3 4760c21d-d6b7-4629-a4bf-8cd37e7053e5 77cff9a48af9756e08043858350d1e5a {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06082.RNA-Seq.genomic.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.genomic.gdc_realn.bam 8207921033 BAM genomic harmonized CPTAC3 27b69363-710f-457d-ac2e-195f49983ffb 1f3f728e121794f82742451633dd4ab9 {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06082.RNA-Seq.S24_L006_R1.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R1_001.fastq.gz 4151955597 FASTQ S24_L006_R1 unaligned CPTAC3 5de83077-6e32-4796-90d6-7742845fbd32 e1d19f47152a2e3888dce9eeda2e7618 {"aliquot_tag": "ALQ_8bcc5479", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06082.RNA-Seq.S24_L006_R2.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R2_001.fastq.gz 4441579884 FASTQ S24_L006_R2 unaligned CPTAC3 3ed174f8-22b4-4d16-a3f7-82447ac3d34a 0c7bf216f683ac883fdf4e09d4e01cbc {"aliquot_tag": "ALQ_8bcc5479", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06082.RNA-Seq.transcriptome.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.transcriptome.gdc_realn.bam 8841829918 BAM transcriptome harmonized CPTAC3 17a78e32-a204-44e8-83fa-cbbc47490d9d 1f04e003673da3c777e1957bd5700d8b {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06082.WGS.Tbm C3L-06082 AML WGS tumor_bone_marrow CPT0369940002 CPT0369940002.WholeGenome.RP-2158.bam 50309371790 BAM aligned CPTAC3 99a1ada9-9d09-4a04-8fec-da11a4c3849a 75ac7c3f88027874546acf76b1f2ab8c {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06082.WGS.Tbm.hg38 C3L-06082 AML WGS tumor_bone_marrow CPT0369940002 76ef3c77-d9e5-4081-afdf-5079589663c7_wgs_gdc_realn.bam 144827805041 BAM harmonized CPTAC3 0bda7b7d-df27-48de-a0fc-755399dea180 7c8476db0bd85cfbe3cd551da7d658c4 {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06082.WXS.Nbc C3L-06082 AML WXS buccal_normal CPT0369910002 CPT0369910002.WholeExome.RP-1303.bam 25926319973 BAM aligned CPTAC3 0cb730aa-7ef5-4b7e-9200-312da0320bfb 97583fc7a9dad0dbfcce9203ee77b89e {"aliquot_tag": "ALQ_86dc3608", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06082.WXS.Nbc.hg38 C3L-06082 AML WXS buccal_normal CPT0369910002 f6184d62-7c6f-49a7-a375-574fcd8faa62_wxs_gdc_realn.bam 35355218737 BAM harmonized CPTAC3 ed1760b8-da9b-4a5a-9433-9d010236f046 d08836f5581135bd5e1fb7f3e1f18fd2 {"aliquot_tag": "ALQ_86dc3608", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06082.WXS.Tbm C3L-06082 AML WXS tumor_bone_marrow CPT0369940002 CPT0369940002.WholeExome.RP-1303.bam 28208513663 BAM aligned CPTAC3 61c462e2-d093-42b3-aa1c-32fd72730c72 bff3e437dac6e99ede4f0c9d0f7c2084 {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06082.WXS.Tbm.hg38 C3L-06082 AML WXS tumor_bone_marrow CPT0369940002 76ef3c77-d9e5-4081-afdf-5079589663c7_wxs_gdc_realn.bam 39154540027 BAM harmonized CPTAC3 69e375cb-f7a4-48b3-b428-ae1b3b6bd512 6a89c49c62824211b04e51514328a09d {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06087.MethArray.Green.Tpb C3L-06087 AML Methylation_Array tumor_peripheral_blood CPT0356660002 205987770157_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b8b9dda3-3b0c-4437-bd91-acb7b173a9e0 4cb08665238fb4dcbf4d4f15971882b4 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.MethArray.Red.Tpb C3L-06087 AML Methylation_Array tumor_peripheral_blood CPT0356660002 205987770157_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 73c7d260-67fc-48d5-9bfb-6aa9e5f746cf 1e8c92551fa50b8bc8d1baef1008d799 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.miRNA-Seq.S36_L002_R1.Tpb C3L-06087 AML miRNA-Seq tumor_peripheral_blood CPT0356680002 220125_UNC32-K00270_0311_AHMNYYBBXY_GGCTAC_S36_L002_R1_001.unaln.bam 282481513 BAM S36_L002_R1 unaligned CPTAC3 1ffbe8d1-4921-4503-aa66-99174a4babcb 3c5dde5592c1567f047159876e2c6f98 {"aliquot_tag": "ALQ_25d91a6", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.miRNA-Seq.Tpb.hg38 C3L-06087 AML miRNA-Seq tumor_peripheral_blood CPT0356680002 381410a6-880a-49d5-80cf-f747b64b6178_mirnaseq_gdc_realn.bam 310821732 BAM harmonized CPTAC3 6baedf2d-2d6d-4540-9559-ba9c681070b2 adf5ba8378cc8fc975a37c490f8adb8c {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.RNA-Seq.chimeric.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.chimeric.gdc_realn.bam 635846234 BAM chimeric harmonized CPTAC3 77b30bb3-065e-423b-8601-ccd607ba431c 26c6b5ae3e51053fad7928c395e9ab7f {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.RNA-Seq.genomic.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.genomic.gdc_realn.bam 7351405463 BAM genomic harmonized CPTAC3 3947512f-2fee-47d8-8cde-26b732b03290 665c7d33adb013070948222d8bce3bfd {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.RNA-Seq.S6_L002_R1.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3677062427 FASTQ S6_L002_R1 unaligned CPTAC3 2759438e-13fb-4a68-8f93-de762a312def 1842c9ac135f66ddfe6dd18e19bcc075 {"aliquot_tag": "ALQ_25d91a6", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.RNA-Seq.S6_L002_R2.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3865925400 FASTQ S6_L002_R2 unaligned CPTAC3 7e2cbc0b-182d-45ba-873e-ef9ce51ced6b 905023f80dac9db3c861fac5cfc8c478 {"aliquot_tag": "ALQ_25d91a6", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.RNA-Seq.transcriptome.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.transcriptome.gdc_realn.bam 7223673189 BAM transcriptome harmonized CPTAC3 82345891-41c2-455e-838e-a2275397d2f1 aec6ac3105386e0e8f67d166d8af8a7a {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.WGS.Nbc C3L-06087 AML WGS buccal_normal CPT0356700002 CPT0356700002.WholeGenome.RP-2158.bam 50270177971 BAM aligned CPTAC3 7533aec2-9c1f-428a-b75d-5a84a7cfa118 96491a96fc590701bfe07e9118553d15 {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06087.WGS.Nbc.hg38 C3L-06087 AML WGS buccal_normal CPT0356700002 579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wgs_gdc_realn.bam 144507062127 BAM harmonized CPTAC3 76fbce3e-9d03-4812-af81-48f4ece89e38 2dea2736e471629221c9115dd7697a7a {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06087.WGS.Tpb C3L-06087 AML WGS tumor_peripheral_blood CPT0356660002 CPT0356660002.WholeGenome.RP-2158.bam 46092867108 BAM aligned CPTAC3 38095b28-4be7-42d5-8ef5-cf5cddcec09b a689b00484d90360990a7a3e8e0d402c {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.WGS.Tpb.hg38 C3L-06087 AML WGS tumor_peripheral_blood CPT0356660002 bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wgs_gdc_realn.bam 135893960716 BAM harmonized CPTAC3 da1742db-aaf8-4617-a695-fea2359a0c0b 115178bdb9822b39b6b234cd6243d97e {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.WXS.Nbc C3L-06087 AML WXS buccal_normal CPT0356700002 CPT0356700002.WholeExome.RP-1303.bam 24355469682 BAM aligned CPTAC3 bd01e3d6-a5e0-460f-ae39-36f3e2c50162 9d23d63796b6ff87e0ec9a04d316ac5a {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06087.WXS.Nbc.hg38 C3L-06087 AML WXS buccal_normal CPT0356700002 579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wxs_gdc_realn.bam 33053744588 BAM harmonized CPTAC3 45604952-1385-4e46-b462-998b6208de8a 5f7a36c23498eaa5d9cbdd394276151c {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06087.WXS.Tpb C3L-06087 AML WXS tumor_peripheral_blood CPT0356660002 CPT0356660002.WholeExome.RP-1303.bam 21862331049 BAM aligned CPTAC3 69c4d610-5bee-4387-bb4e-6b1d43942393 15b66325994ccbe7134822f2b3335b94 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06087.WXS.Tpb.hg38 C3L-06087 AML WXS tumor_peripheral_blood CPT0356660002 bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wxs_gdc_realn.bam 30153143018 BAM harmonized CPTAC3 e076dabd-9af6-4cd2-81cf-948c8212f335 282be9689415c28877ed826ac1cb81f3 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.MethArray.Green.Tpb C3L-06089 AML Methylation_Array tumor_peripheral_blood CPT0356520002 205987770157_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 125345e9-608a-4efa-a0c8-dfc342530d5f 37680c62f8965f8bb35f6f8fbb6b70e7 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.MethArray.Red.Tpb C3L-06089 AML Methylation_Array tumor_peripheral_blood CPT0356520002 205987770157_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 d32d96b3-ecaf-4c9c-b6f9-87e8d9e2d3bd 559b335ce9228794123312d473f3838d {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.miRNA-Seq.S13_L001_R1.Tpb C3L-06089 AML miRNA-Seq tumor_peripheral_blood CPT0356510002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L001_R1_001.unaln.bam 288610667 BAM S13_L001_R1 unaligned CPTAC3 1d900a25-c657-422a-b043-10f9b3008738 02eb1ffacce75b1f04bd910ed967accc {"aliquot_tag": "ALQ_89d98179", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.miRNA-Seq.Tpb.hg38 C3L-06089 AML miRNA-Seq tumor_peripheral_blood CPT0356510002 fb811d85-7701-44e3-80a2-7f45fc7260ee_mirnaseq_gdc_realn.bam 319030624 BAM harmonized CPTAC3 d3b71090-2df3-4c35-adcc-e10a5136a034 c3b1a9b84c2e15c2b91ff7ab133acf9c {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.RNA-Seq.chimeric.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.chimeric.gdc_realn.bam 599505590 BAM chimeric harmonized CPTAC3 b9045acd-3a04-466b-86ce-38f66e15b66d ef8d2deb7486e83cff25289024723b7a {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.RNA-Seq.genomic.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.genomic.gdc_realn.bam 8215952364 BAM genomic harmonized CPTAC3 a8591116-5067-45f8-8055-17cac5fa76c8 bebbc9ed0bf77ef653d5ad159f8e5bbf {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.RNA-Seq.S19_L005_R1.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R1_001.fastq.gz 4099782324 FASTQ S19_L005_R1 unaligned CPTAC3 b712df6d-c392-46bf-8466-ce7af45d8b74 8f15ea9bedc63b2ff1fe6d7b932508bf {"aliquot_tag": "ALQ_89d98179", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.RNA-Seq.S19_L005_R2.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R2_001.fastq.gz 4372659822 FASTQ S19_L005_R2 unaligned CPTAC3 8279bbfd-fc68-4b8e-96d6-a830a752527b d136f38f36eea2b6fd9a1197452fd30b {"aliquot_tag": "ALQ_89d98179", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.RNA-Seq.transcriptome.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.transcriptome.gdc_realn.bam 12177283992 BAM transcriptome harmonized CPTAC3 331f3250-5b8e-49c7-b904-9a15eb676a80 55a827defa07de010589cc9b9127711d {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.WGS.Nbc C3L-06089 AML WGS buccal_normal CPT0356590003 CPT0356590003.WholeGenome.RP-2158.bam 46112083784 BAM aligned CPTAC3 059ba062-84e6-4b72-a806-2b39e6fe4714 2ad8dd8fcac053c9864439a5494a2724 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06089.WGS.Nbc.hg38 C3L-06089 AML WGS buccal_normal CPT0356590003 f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wgs_gdc_realn.bam 133693382041 BAM harmonized CPTAC3 08e06a2b-fa98-47c2-8e5d-8a17196c3211 385ebbf96b099eb301f9e45aa1dbb906 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06089.WGS.Tpb C3L-06089 AML WGS tumor_peripheral_blood CPT0356520002 CPT0356520002.WholeGenome.RP-2158.bam 43844001775 BAM aligned CPTAC3 2109b132-2eee-4d22-9a08-3e3f7ddfa23b 6f3d3edc48d24466ac7a34816a04e2e9 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.WGS.Tpb.hg38 C3L-06089 AML WGS tumor_peripheral_blood CPT0356520002 2f1ed585-fbde-4e6c-ab04-622098a497f1_wgs_gdc_realn.bam 128549005080 BAM harmonized CPTAC3 37b73a94-d717-4fad-b01b-6f184d89e923 9434efc5c9ae3e37b78c411d69c5e08b {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.WXS.Nbc C3L-06089 AML WXS buccal_normal CPT0356590003 CPT0356590003.WholeExome.RP-1303.bam 27844450157 BAM aligned CPTAC3 97728e19-c8d4-4569-8d20-de6bcd58defe ac85dd76c874ebe2ac96e53117b96460 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06089.WXS.Nbc.hg38 C3L-06089 AML WXS buccal_normal CPT0356590003 f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wxs_gdc_realn.bam 37751006036 BAM harmonized CPTAC3 649cedd6-dca5-483a-a82b-5388be642838 8b04514b70104f2138504600bc663ce5 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06089.WXS.Tpb C3L-06089 AML WXS tumor_peripheral_blood CPT0356520002 CPT0356520002.WholeExome.RP-1303.bam 29490911091 BAM aligned CPTAC3 dff5bb4e-b7dc-4f75-aa8f-ce20176e4b82 577adb528d634aadcc438504dd56a880 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06089.WXS.Tpb.hg38 C3L-06089 AML WXS tumor_peripheral_blood CPT0356520002 2f1ed585-fbde-4e6c-ab04-622098a497f1_wxs_gdc_realn.bam 41009935022 BAM harmonized CPTAC3 0a9ebaa5-b7d2-4194-9574-334e4670fa24 eb4fb3af6673f0003f21a746a313a367 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.MethArray.Green.Tpb C3L-06090 AML Methylation_Array tumor_peripheral_blood CPT0356900002 205707890036_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 4c1037d0-76b9-4120-8004-3cec3de72f19 13a83dcb8f786f1ac9479b00f3e07097 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.MethArray.Red.Tpb C3L-06090 AML Methylation_Array tumor_peripheral_blood CPT0356900002 205707890036_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 278d3f6b-b42b-4c39-a262-10b82fde2796 fa1d9e07005f2c778328c26d7d248a72 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.miRNA-Seq.S14_L001_R1.Tpb C3L-06090 AML miRNA-Seq tumor_peripheral_blood CPT0356930002 220125_UNC32-K00270_0311_AHMNYYBBXY_GACGAC_S14_L001_R1_001.unaln.bam 326420322 BAM S14_L001_R1 unaligned CPTAC3 289adb3d-f77c-4b75-af9e-ea8350a2b2b5 ecbe113dda345b750c1fde90c1721818 {"aliquot_tag": "ALQ_84db1262", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.miRNA-Seq.Tpb.hg38 C3L-06090 AML miRNA-Seq tumor_peripheral_blood CPT0356930002 192f98b7-fc07-4d9a-a14e-3e16355e4077_mirnaseq_gdc_realn.bam 361230965 BAM harmonized CPTAC3 18e4e810-a344-4cdc-825d-74c474d43684 0dbb79c997c825e181eff2bac75a4207 {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.RNA-Seq.chimeric.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.chimeric.gdc_realn.bam 535273210 BAM chimeric harmonized CPTAC3 76b39184-96d7-4e31-a21c-2684ad5a7e46 1cc960646454c595526d29ca4b676318 {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.RNA-Seq.genomic.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.genomic.gdc_realn.bam 7815513794 BAM genomic harmonized CPTAC3 1ddbfb9a-50eb-4e36-981f-5a530fb79bbf 1cddecf85a252a6e589503025f0ff8ce {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.RNA-Seq.S20_L005_R1.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R1_001.fastq.gz 3863859446 FASTQ S20_L005_R1 unaligned CPTAC3 aced9574-d984-40e2-ad49-44cb32111bb8 c24fb4ac5c0c287a4e14d3cc74544b01 {"aliquot_tag": "ALQ_84db1262", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.RNA-Seq.S20_L005_R2.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R2_001.fastq.gz 4193155097 FASTQ S20_L005_R2 unaligned CPTAC3 8a865415-1cd7-45e3-8b19-187d4a706914 8cb5460bcb0670fc4c4a98154d950a7e {"aliquot_tag": "ALQ_84db1262", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.RNA-Seq.transcriptome.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.transcriptome.gdc_realn.bam 10863648268 BAM transcriptome harmonized CPTAC3 972dd758-7065-4932-bdfb-6eecf0e43155 2eb1adabbb53b583ddd81c4735a1cfdf {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.WGS.Nbc C3L-06090 AML WGS buccal_normal CPT0356940003 CPT0356940003.WholeGenome.RP-2158.bam 43563326934 BAM aligned CPTAC3 1de5500b-e758-4a7d-8d7b-c55217754da0 5c02cb8490afcd3ea726ddacc1e29e85 {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06090.WGS.Nbc.hg38 C3L-06090 AML WGS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wgs_gdc_realn.bam 135844710501 BAM harmonized CPTAC3 a722364a-e5e2-4e48-b998-36ebf73181a1 697b0d275b1d605d0f201691a8fc9379 {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06090.WGS.Tpb C3L-06090 AML WGS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeGenome.RP-2158.bam 48011253955 BAM aligned CPTAC3 3757ffe8-d303-4046-8e19-8f85ec04be18 c33a610030846eb9a99a50dc390fa885 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.WGS.Tpb.hg38 C3L-06090 AML WGS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wgs_gdc_realn.bam 136604782264 BAM harmonized CPTAC3 0f011ecf-0b85-490f-9a3d-cc1a4ba0879a dae84c27eb9c8f3e3680b5b58b5ebee0 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.WXS.Nbc C3L-06090 AML WXS buccal_normal CPT0356940003 CPT0356940003.WholeExome.RP-1303.bam 21293796280 BAM aligned CPTAC3 e46b4eda-af18-47fd-9f40-2de6cdecb47e 62a9d9c8c37a6a7010e1b17e0ab19378 {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06090.WXS.Nbc.hg38 C3L-06090 AML WXS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wxs_gdc_realn.bam 28827956277 BAM harmonized CPTAC3 71ab0872-716e-451f-8bcb-46b1805592cf 69fb1e4720cdf5fddca3ed59459730fb {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06090.WXS.Tpb C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeExome.RP-1303.bam 22241932064 BAM aligned CPTAC3 9cb34e01-5744-40fd-89eb-b5fa99edc1cc e6cbec164fd2728e06fc9e49b4e4ac43 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06090.WXS.Tpb.hg38 C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wxs_gdc_realn.bam 30681620462 BAM harmonized CPTAC3 b39ab4d3-f21e-41b3-b0fc-5dd40fccfbaf 68c7f68b14d18aeee53c7fd872a5cc48 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06166.RNA-Seq.chimeric.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.chimeric.gdc_realn.bam 88861301 BAM chimeric harmonized CPTAC3 c54cd277-680a-4d3e-9c42-1dd8e75693d6 da326df8209c8b5b6acc373370b2134a {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor"} -C3L-06166.RNA-Seq.genomic.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.genomic.gdc_realn.bam 5519855623 BAM genomic harmonized CPTAC3 e508fdcd-20bd-439c-b659-e469956ddf50 dc428186305cb0ccbfa22eb0b55a9c69 {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor"} -C3L-06166.RNA-Seq.S37_R1.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R1_001.fastq.gz 3427273897 FASTQ S37_R1 unaligned CPTAC3 e4b7dcf5-c1c6-4e10-b6ab-89137e4be289 94fb955ed112911b77c7218cffdd52a1 {"aliquot_tag": "ALQ_b3016e19", "sample": "S37", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-06166.RNA-Seq.S37_R2.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R2_001.fastq.gz 3526630052 FASTQ S37_R2 unaligned CPTAC3 3e4d4f96-d06f-4f46-9a9c-db812695fad7 219f16bf9a2dc8ef4f2a1f297dc7eaf4 {"aliquot_tag": "ALQ_b3016e19", "sample": "S37", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-06166.RNA-Seq.transcriptome.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.transcriptome.gdc_realn.bam 4204271211 BAM transcriptome harmonized CPTAC3 f23ad4fd-42cd-48b3-b542-b1e2644c4965 0121f88d09d447efc02afdb585e5d920 {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor"} -C3L-06169.MethArray.Green.A C3L-06169 LSCC Methylation_Array tissue_normal CPT0294650006 204372030013_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 cb284767-1b7b-4954-909a-33cc49801f0f 492be39d2d4d51139311adabee644d3d {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.MethArray.Green.T C3L-06169 LSCC Methylation_Array tumor CPT0294630006 204367490048_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 ce261e4a-0e6d-4b60-b19b-0eb5dcfc81c9 ae4a6f673d95da0978b4444b586c7b3c {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor"} -C3L-06169.MethArray.Red.A C3L-06169 LSCC Methylation_Array tissue_normal CPT0294650006 204372030013_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 3f30c251-ec13-4dd6-9379-959af7b85c02 fb9287134e52dad0fef0b12f9ab4d0f8 {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.MethArray.Red.T C3L-06169 LSCC Methylation_Array tumor CPT0294630006 204367490048_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 330515f4-be5f-4a94-9768-3972ad3213b3 cda6607809b3c0f55043b629f4affe46 {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor"} -C3L-06169.miRNA-Seq.A.hg38 C3L-06169 LSCC miRNA-Seq tissue_normal CPT0294650009 6f3caa02-68a0-46fa-b092-63e1efa39cfd_mirnaseq_gdc_realn.bam 277006476 BAM harmonized CPTAC3 de7f6291-7086-41c7-b85d-092b04531350 2197ba6ed4b843bf4b9d7ef9bd538558 {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.miRNA-Seq.S20_L001_R1.T C3L-06169 LSCC miRNA-Seq tumor CPT0294630009 200325_UNC31-K00269_0272_AHHC2NBBXY_TATAAT_S20_L001_R1_001.unaln.bam 258167066 BAM S20_L001_R1 unaligned CPTAC3 41cb2a44-5f2b-4713-839a-538f9fb13edd e911944b48600476ee6ac8c117f70cd4 {"aliquot_tag": "ALQ_3514691a", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-06169.miRNA-Seq.S38_L006_R1.A C3L-06169 LSCC miRNA-Seq tissue_normal CPT0294650009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTAGCT_S38_L006_R1_001.unaln.bam 247746163 BAM S38_L006_R1 unaligned CPTAC3 ea07f382-5934-43be-be73-f016b9d1ba4a 10e159f22043a9e8a129137b3274ed48 {"aliquot_tag": "ALQ_ba549cba", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.miRNA-Seq.T.hg38 C3L-06169 LSCC miRNA-Seq tumor CPT0294630009 429aefb3-fd55-4ebb-a462-0d4d61286a99_mirnaseq_gdc_realn.bam 279778633 BAM harmonized CPTAC3 c14c93c1-586e-4624-b9c7-b419f6ee6f18 89c5f621a23005ee6a050d8599824f96 {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor"} -C3L-06169.RNA-Seq.chimeric.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.chimeric.gdc_realn.bam 26431436 BAM chimeric harmonized CPTAC3 81fe3322-f9c5-425e-bcbe-2f411a91884f e9aed741935f32ad6c1dacdd6b74eba0 {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.RNA-Seq.chimeric.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.chimeric.gdc_realn.bam 56269662 BAM chimeric harmonized CPTAC3 4953ec8d-9bfb-4844-aa79-822b3f476720 1291b1783d944119aaab879dd05073ae {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor"} -C3L-06169.RNA-Seq.genomic.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.genomic.gdc_realn.bam 7964382498 BAM genomic harmonized CPTAC3 85938f36-3a34-405f-bf99-0bdcfd95f331 08e748b6283995a667047519717e8ca5 {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.RNA-Seq.genomic.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.genomic.gdc_realn.bam 7867809789 BAM genomic harmonized CPTAC3 7203d337-4936-4fcf-ad01-5fd4e29e396a 8d9f3bd936a2601caabdfa7b4308bf30 {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor"} -C3L-06169.RNA-Seq.S22_L006_R1.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R1_001.fastq.gz 3521793454 FASTQ S22_L006_R1 unaligned CPTAC3 36bc82c5-ec55-4d82-8120-70629a8fe622 7a96b35fe2d4d6181893618fea2540cf {"aliquot_tag": "ALQ_ba549cba", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.RNA-Seq.S22_L006_R2.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R2_001.fastq.gz 4304341065 FASTQ S22_L006_R2 unaligned CPTAC3 3daa5c88-e40a-4e3c-83e5-612807b983de 70d28c836ef7ca20d870d8bb1bbe30d2 {"aliquot_tag": "ALQ_ba549cba", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.RNA-Seq.S28_L007_R1.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R1_001.fastq.gz 3992470249 FASTQ S28_L007_R1 unaligned CPTAC3 3d44ddb4-1b20-43c1-9b8c-1edf4e3b2df3 c4f33ff0128fac25ccb1455d16f7cbb0 {"aliquot_tag": "ALQ_3514691a", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-06169.RNA-Seq.S28_L007_R2.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R2_001.fastq.gz 4076167287 FASTQ S28_L007_R2 unaligned CPTAC3 1450f737-61b9-4fae-a7b5-9139ab891db3 c59dc3eb56ba5487b456fade104cb452 {"aliquot_tag": "ALQ_3514691a", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-06169.RNA-Seq.transcriptome.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.transcriptome.gdc_realn.bam 8843694211 BAM transcriptome harmonized CPTAC3 38f12b4e-bc69-44de-901e-09e566a61f73 aa6f48dc94323e32e195b14416e5d7ac {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.RNA-Seq.transcriptome.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.transcriptome.gdc_realn.bam 11636262843 BAM transcriptome harmonized CPTAC3 26f0da45-328e-43d5-8b7d-376e26d907db 188e99b4fc156c6f1b248719c18001f6 {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor"} -C3L-06169.WGS.N C3L-06169 LSCC WGS blood_normal CPT0294750002 CPT0294750002.WholeGenome.RP-2158.bam 23131487388 BAM aligned CPTAC3 863ed97c-b507-40cc-9d52-eb9bc80f4dce f3be670ac2308b9ef6dd5c21a43d0f6e {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal"} -C3L-06169.WGS.N.hg38 C3L-06169 LSCC WGS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wgs_gdc_realn.bam 68073812557 BAM harmonized CPTAC3 535ed714-d6e5-4a74-99b7-ba78acdffa9a ca785a75ad07eacb80af64855f386356 {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal"} -C3L-06169.WGS.T C3L-06169 LSCC WGS tumor CPT0294630006 CPT0294630006.WholeGenome.RP-2158.bam 26327788819 BAM aligned CPTAC3 ccc003ce-b21b-405f-8a0e-4939ed785d28 5b7e1769250f6b95090e832ee88fb3c1 {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor"} -C3L-06169.WGS.T.hg38 C3L-06169 LSCC WGS tumor CPT0294630006 4aa15ba7-8f09-406f-9950-0dbaad1751f0_wgs_gdc_realn.bam 75314839042 BAM harmonized CPTAC3 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 08f48bc6da1c953863010b9e7db4df1e {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor"} -C3L-06169.WXS.A C3L-06169 LSCC WXS tissue_normal CPT0294650006 CPT0294650006.WholeExome.RP-1303.bam 25779139369 BAM aligned CPTAC3 51ed7158-554a-4acf-8d89-c53ba13e68c8 a80b1f296a372dc104710d7ca55f2414 {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.WXS.A.hg38 C3L-06169 LSCC WXS tissue_normal CPT0294650006 8d4aef10-e8c5-491f-a95e-2cd4f8ab9526_wxs_gdc_realn.bam 36011711312 BAM harmonized CPTAC3 b681489b-d999-4b02-89ea-10b4ae0a31af 7196530d68971a5c6f7a2eedf0cc6241 {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-06169.WXS.N C3L-06169 LSCC WXS blood_normal CPT0294750002 CPT0294750002.WholeExome.RP-1303.bam 26819712412 BAM aligned CPTAC3 aff3cbf9-0477-4954-961c-665c62e261e8 8907f20bc4a907d44e49cb7707ac3097 {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal"} -C3L-06169.WXS.N.hg38 C3L-06169 LSCC WXS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wxs_gdc_realn.bam 36419327281 BAM harmonized CPTAC3 e4516e9f-55ec-4d26-95da-94432a652dd6 bb7d77083bd16a530863ad73f24f685f {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal"} -C3L-06169.WXS.T C3L-06169 LSCC WXS tumor CPT0294630006 CPT0294630006.WholeExome.RP-1303.bam 19082996953 BAM aligned CPTAC3 57f91759-b383-4792-971a-3402dfe2f5c4 71efa1f248b1785073c7aa2f2fea604d {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor"} -C3L-06169.WXS.T.hg38 C3L-06169 LSCC WXS tumor CPT0294630006 4aa15ba7-8f09-406f-9950-0dbaad1751f0_wxs_gdc_realn.bam 26741225402 BAM harmonized CPTAC3 f1cc54af-4370-4abb-82c2-d0d4dc3f7591 6b4e5fc677d27ac25cc5b86a8223eb0e {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor"} -C3L-06352.MethArray.Green.Tpb C3L-06352 AML Methylation_Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1d1c7158-0399-487d-b0c4-1ffee98a8a69 055d537c5585acfbc599cdaef8780f3a {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.MethArray.Red.Tpb C3L-06352 AML Methylation_Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 49fca346-5913-4a2f-9a98-7bd5933f9003 3c4e93258408c0184ef883170f4f7722 {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.miRNA-Seq.S16_L001_R1.Tpb C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 220125_UNC32-K00270_0311_AHMNYYBBXY_TACAGC_S16_L001_R1_001.unaln.bam 205706771 BAM S16_L001_R1 unaligned CPTAC3 d956c69e-9c39-4a59-bba7-07646578e580 8d85195c2d541157f78c189911be2061 {"aliquot_tag": "ALQ_57b0d569", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.miRNA-Seq.Tpb.hg38 C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 da7b1cf6-bbce-4dcb-8dd0-cbd1333098a4_mirnaseq_gdc_realn.bam 227074556 BAM harmonized CPTAC3 444a7c94-15bc-4a6e-973d-db7308415f8a 2cd01cd62c31dfb0e543244de15c22e9 {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.RNA-Seq.chimeric.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.chimeric.gdc_realn.bam 518916507 BAM chimeric harmonized CPTAC3 bed5c220-6fb6-443c-80e6-59103b056e40 eb925193739a84ef7d23b4f2d40f8ac9 {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.RNA-Seq.genomic.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.genomic.gdc_realn.bam 7409333053 BAM genomic harmonized CPTAC3 df2eb2cf-9187-4bda-9fe4-071966a85514 839f97d20539d55d901dedfccb0e45c5 {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.RNA-Seq.S22_L006_R1.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 3712758461 FASTQ S22_L006_R1 unaligned CPTAC3 410f0722-f272-45d3-bb61-d02385a8dd41 7e625254b2148041f7a28e3639f4f0d3 {"aliquot_tag": "ALQ_57b0d569", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.RNA-Seq.S22_L006_R2.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 3973065633 FASTQ S22_L006_R2 unaligned CPTAC3 94ab1d18-35e2-4337-8e4c-79dc8f176cf7 7e877e34ae95d15c4c0ba85fa22b22f6 {"aliquot_tag": "ALQ_57b0d569", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.RNA-Seq.transcriptome.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.transcriptome.gdc_realn.bam 7791025996 BAM transcriptome harmonized CPTAC3 90e5bdbb-b9a2-4724-9a3d-e9bc9379e248 da55d7c26252b41519c47a93ab11bc1d {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.WGS.Nbc C3L-06352 AML WGS buccal_normal CPT0323570003 CPT0323570003.WholeGenome.RP-2158.bam 42112140789 BAM aligned CPTAC3 3b6969ce-e96b-4319-b1ec-b571378c826f 6622eb6d2ad9073525c42f51ae92c150 {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06352.WGS.Nbc.hg38 C3L-06352 AML WGS buccal_normal CPT0323570003 8f59793f-4cee-4f3f-a8ef-4203804d115b_wgs_gdc_realn.bam 123922636659 BAM harmonized CPTAC3 27595487-bbe0-436e-b38c-1d86aa50d8b0 31d9be2554d937486f907fa66ffa25ca {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06352.WGS.Tpb C3L-06352 AML WGS tumor_peripheral_blood CPT0323600002 CPT0323600002.WholeGenome.RP-2158.bam 55820043679 BAM aligned CPTAC3 83adf58f-bf8e-48c6-90fc-f3ee03c01661 11f29e029febb0269c24401e0a30ca1b {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.WGS.Tpb.hg38 C3L-06352 AML WGS tumor_peripheral_blood CPT0323600002 686262c4-f449-4965-b65c-27019801671d_wgs_gdc_realn.bam 169114943867 BAM harmonized CPTAC3 17c81b9e-2685-4178-8bb1-046c9380bfba c7da80d8a3d181877b248f896bee1594 {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.WXS.Nbc C3L-06352 AML WXS buccal_normal CPT0323570003 CPT0323570003.WholeExome.RP-1303.bam 30059228254 BAM aligned CPTAC3 7e57c65c-2fef-4746-b7f9-63d723d05d13 13a861e0c96ffcc91dcfe64c7878d095 {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06352.WXS.Nbc.hg38 C3L-06352 AML WXS buccal_normal CPT0323570003 8f59793f-4cee-4f3f-a8ef-4203804d115b_wxs_gdc_realn.bam 41208313693 BAM harmonized CPTAC3 f09dcaa8-87ac-4636-aec0-3b31d72597e9 ad5e6e41527eee6aaeeccbd5f0cdd21b {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06352.WXS.Tpb C3L-06352 AML WXS tumor_peripheral_blood CPT0323600002 CPT0323600002.WholeExome.RP-1303.bam 24667448921 BAM aligned CPTAC3 331f7922-6dfb-49fc-a9b2-3f8fabcffeab e9f6511d11cf54b591a8b23c8bd2592e {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06352.WXS.Tpb.hg38 C3L-06352 AML WXS tumor_peripheral_blood CPT0323600002 686262c4-f449-4965-b65c-27019801671d_wxs_gdc_realn.bam 33935153637 BAM harmonized CPTAC3 a47a0dda-4b98-478b-ae1f-3220e5d4b9b8 9634c8c218279e62b7cdeccdbcd9bb7d {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06356.MethArray.Green.Tbm C3L-06356 AML Methylation_Array tumor_bone_marrow CPT0345400002 205555390164_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 97dbc112-7de3-4c3f-b028-bbd2114d73b0 8876cdb806c9ba08f77e1e86f5aa0744 {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.MethArray.Red.Tbm C3L-06356 AML Methylation_Array tumor_bone_marrow CPT0345400002 205555390164_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 c112e12c-314c-4068-aa48-e6b7d200a4df 89eca0030ed0ad2bf620a10e376cc1dc {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.miRNA-Seq.S24_L007_R1.Tbm C3L-06356 AML miRNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC31-K00269_0297_AHKCFKBBXY_GCCAAT_S24_L007_R1_001.unaln.bam 251208109 BAM S24_L007_R1 unaligned CPTAC3 9ace19a4-0bbb-4f1e-b11a-e833f2803278 56f05e7386b26ef2141e7d79ff23d478 {"aliquot_tag": "ALQ_bfc748df", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.miRNA-Seq.Tbm.hg38 C3L-06356 AML miRNA-Seq tumor_bone_marrow CPT0345410002 f279d895-adb4-4952-8071-e01ffb8add5a_mirnaseq_gdc_realn.bam 276594644 BAM harmonized CPTAC3 85378ee8-d4ce-43ba-be5d-8be0de927d46 53f97210688d01ec132f0f9c36f2b1e4 {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.RNA-Seq.chimeric.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.chimeric.gdc_realn.bam 79657723 BAM chimeric harmonized CPTAC3 f4274578-1a03-4192-930d-d8f2075507fe 4f92f13f290bbe804f9ca8b46c1d98ed {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.RNA-Seq.genomic.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.genomic.gdc_realn.bam 6793964486 BAM genomic harmonized CPTAC3 3a9113a3-17a1-4b07-8fd8-0bdb076ec586 3dba23cc3f535a0b343ecbfad8d4a1de {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.RNA-Seq.S7_L002_R1.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 3354501657 FASTQ S7_L002_R1 unaligned CPTAC3 982e7649-c13c-4393-b05e-0d1ac8228221 c44535a802deff475b20563b55ede329 {"aliquot_tag": "ALQ_bfc748df", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.RNA-Seq.S7_L002_R2.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 3644776298 FASTQ S7_L002_R2 unaligned CPTAC3 42345a72-3860-463d-bccb-53bd28182ed9 00b213ba12c54b566dfaa5ec9dcba834 {"aliquot_tag": "ALQ_bfc748df", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.RNA-Seq.transcriptome.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.transcriptome.gdc_realn.bam 8182887652 BAM transcriptome harmonized CPTAC3 0c236da3-5602-4948-ba04-8fc21ab32111 a0ebc22ca1964a9a245d46f2f1d5f179 {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.WGS.Nbc C3L-06356 AML WGS buccal_normal CPT0345370003 CPT0345370003.WholeGenome.RP-2158.bam 48252315460 BAM aligned CPTAC3 7ac2c1f7-595b-4c3d-9027-965910946d8a f6730c26502c1dd1a42e9f37b40c370d {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06356.WGS.Nbc.hg38 C3L-06356 AML WGS buccal_normal CPT0345370003 6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wgs_gdc_realn.bam 146301175318 BAM harmonized CPTAC3 77636d17-c52a-44b3-9a13-5a4a0e06d660 5b1beb789e3077f2ead18d3155582620 {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06356.WGS.Tbm C3L-06356 AML WGS tumor_bone_marrow CPT0345400002 CPT0345400002.WholeGenome.RP-2158.bam 50235996699 BAM aligned CPTAC3 b7068ea0-6b4d-4840-96be-636f9a0908db cd6f23a4cbfc2c29ba1229bb96c90ec9 {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.WGS.Tbm.hg38 C3L-06356 AML WGS tumor_bone_marrow CPT0345400002 cb6684bd-ab94-47bb-948f-14e8dc209b0e_wgs_gdc_realn.bam 150032150896 BAM harmonized CPTAC3 7e9fdf55-4553-45ce-b272-d72a89ebeccd bba8ad155bb88195f435179077464b3b {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.WXS.Nbc C3L-06356 AML WXS buccal_normal CPT0345370003 CPT0345370003.WholeExome.RP-1303.bam 31532076442 BAM aligned CPTAC3 cd9059cf-fad4-4108-8889-200bb9189a3b ddb13f8834b9850300357b8bc853ec26 {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06356.WXS.Nbc.hg38 C3L-06356 AML WXS buccal_normal CPT0345370003 6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wxs_gdc_realn.bam 44119199249 BAM harmonized CPTAC3 87a3ee1c-badb-4f3b-af8e-6ad4f68b7be8 caa855b88e5b50e29de518bad89b1232 {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06356.WXS.Tbm C3L-06356 AML WXS tumor_bone_marrow CPT0345400002 CPT0345400002.WholeExome.RP-1303.bam 26468768432 BAM aligned CPTAC3 ab5e7de8-ab4f-44e1-b317-04a309e5dc82 7dc91b6ff48b7b3322bc62612a6aee4b {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06356.WXS.Tbm.hg38 C3L-06356 AML WXS tumor_bone_marrow CPT0345400002 cb6684bd-ab94-47bb-948f-14e8dc209b0e_wxs_gdc_realn.bam 37177646298 BAM harmonized CPTAC3 2493d649-636d-4750-b041-634e8ead6c2f 1214f88b43c6097f598361684354e44f {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.MethArray.Green.Tbm C3L-06357 AML Methylation_Array tumor_bone_marrow CPT0345500002 204930640111_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 35b81a62-b1e6-4083-a8d5-261b0e301db4 a849659a3d52804956bb7c4b301f6dfe {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.MethArray.Red.Tbm C3L-06357 AML Methylation_Array tumor_bone_marrow CPT0345500002 204930640111_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 be543670-c9d6-40e8-a3c7-77644149bed5 b9ed5979343986dd09426b7c04c9abeb {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.miRNA-Seq.S20_L007_R1.Tbm C3L-06357 AML miRNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAGATC_S20_L007_R1_001.unaln.bam 179816208 BAM S20_L007_R1 unaligned CPTAC3 830dbcbb-a1fc-4b75-aca1-4d8c7e115aaf 1d22e3e2f1487b9808c740d117acb670 {"aliquot_tag": "ALQ_749b9b7a", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.miRNA-Seq.Tbm.hg38 C3L-06357 AML miRNA-Seq tumor_bone_marrow CPT0345510002 c2dff194-89fd-42da-aeb1-af413d1c9291_mirnaseq_gdc_realn.bam 192485380 BAM harmonized CPTAC3 43d3f986-b039-4a99-86ed-1225889447bc 903b86ecf33d468e855506214ab420f0 {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.RNA-Seq.chimeric.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.chimeric.gdc_realn.bam 163160573 BAM chimeric harmonized CPTAC3 5d8cabbc-d0cf-43cd-b935-bb64a9dcb4e0 82210fbd8a89ea54fb35ecbdd25c479d {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.RNA-Seq.genomic.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.genomic.gdc_realn.bam 9544647466 BAM genomic harmonized CPTAC3 eb47d829-8369-4411-9481-2eb11a4ae6f0 fe9e320e3e5c8081c346873ed4fb84f0 {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.RNA-Seq.S6_L002_R1.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R1_001.fastq.gz 4878621442 FASTQ S6_L002_R1 unaligned CPTAC3 ec1e8eae-c0b1-4f4f-84a1-7c89b4de576a f7165f7c2aa884755c4826a524f30b64 {"aliquot_tag": "ALQ_749b9b7a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.RNA-Seq.S6_L002_R2.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R2_001.fastq.gz 5400504085 FASTQ S6_L002_R2 unaligned CPTAC3 e5daae8a-9e87-4dde-a643-4063ff946fc6 dcbfb2fc4663176a129316f035bd3049 {"aliquot_tag": "ALQ_749b9b7a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.RNA-Seq.transcriptome.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.transcriptome.gdc_realn.bam 13950974279 BAM transcriptome harmonized CPTAC3 1cf09892-a0e8-4cf8-9881-2e7cbf08a68c ae1766f440f0426d26e2707a50dda499 {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.WGS.Nbc C3L-06357 AML WGS buccal_normal CPT0345470003 CPT0345470003.WholeGenome.RP-2158.bam 50526220414 BAM aligned CPTAC3 f189f79f-e7be-4668-a0d0-00184f05f3d7 114cf72062570c44770f374e024b6ccd {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06357.WGS.Nbc.hg38 C3L-06357 AML WGS buccal_normal CPT0345470003 38def854-7f69-4574-8538-a33f2ddac72d_wgs_gdc_realn.bam 147818241279 BAM harmonized CPTAC3 0ae5fa74-35c4-400e-8946-969a354b3d0d 0cb9027e63e110b989ca20f9adda4bf1 {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06357.WGS.Tbm C3L-06357 AML WGS tumor_bone_marrow CPT0345500002 CPT0345500002.WholeGenome.RP-2158.bam 51968178021 BAM aligned CPTAC3 dbc357e6-d7bd-41fd-be21-d8a6a6db81ba 1c0f309cb864d12ab1afe2d5e7ffea8d {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.WGS.Tbm.hg38 C3L-06357 AML WGS tumor_bone_marrow CPT0345500002 e9027e42-32a8-4775-b3b5-35a50556e467_wgs_gdc_realn.bam 157174880176 BAM harmonized CPTAC3 f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84 569515849d452e6316e6be08ed0e86ad {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.WXS.Nbc C3L-06357 AML WXS buccal_normal CPT0345470003 CPT0345470003.WholeExome.RP-1303.bam 26147005652 BAM aligned CPTAC3 4b35fea2-1534-4144-9c13-d703373be3a1 a0c14cbd52d7025ac070e9ff7b5ee1a5 {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06357.WXS.Nbc.hg38 C3L-06357 AML WXS buccal_normal CPT0345470003 38def854-7f69-4574-8538-a33f2ddac72d_wxs_gdc_realn.bam 36611768867 BAM harmonized CPTAC3 27df62fa-1212-431d-8211-9981886b123d 9c8d7c8df01fa85f7e34e45d37e8da86 {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06357.WXS.Tbm C3L-06357 AML WXS tumor_bone_marrow CPT0345500002 CPT0345500002.WholeExome.RP-1303.bam 21412179681 BAM aligned CPTAC3 2d38bd3e-a284-40b2-8a6e-bf9d0e14bd6f 77cb4e63410d0c03712a253697097778 {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06357.WXS.Tbm.hg38 C3L-06357 AML WXS tumor_bone_marrow CPT0345500002 e9027e42-32a8-4775-b3b5-35a50556e467_wxs_gdc_realn.bam 29740004887 BAM harmonized CPTAC3 2fecf565-75c1-4474-a90e-30201dc60394 cdb8e737e10452f28bbba58027263b30 {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.MethArray.Green.Tbm C3L-06361 AML Methylation_Array tumor_bone_marrow CPT0345610002 205555390128_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2026d108-87b9-4803-b924-34db203c40e5 29235d0d9739a3f7862a2efc9661965d {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.MethArray.Red.Tbm C3L-06361 AML Methylation_Array tumor_bone_marrow CPT0345610002 205555390128_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 0a27b125-62a5-49e2-b3be-3464c76f2811 42b184919ce526bef9e4e52692cbfb11 {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.miRNA-Seq.S15_L007_R1.Tbm C3L-06361 AML miRNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACTTGA_S15_L007_R1_001.unaln.bam 201814939 BAM S15_L007_R1 unaligned CPTAC3 fb9945a0-1025-40fd-9b6d-de0968f78862 4574006d61a22fe641b3218967bd9915 {"aliquot_tag": "ALQ_b5af9304", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.miRNA-Seq.Tbm.hg38 C3L-06361 AML miRNA-Seq tumor_bone_marrow CPT0345620002 d98b9f07-f33f-4100-b762-329adc0cf2cd_mirnaseq_gdc_realn.bam 223143668 BAM harmonized CPTAC3 905ed7ac-b3ed-4d32-b15c-3eb3aa0be6c4 97663b19a158707bfaa8cb074fd54016 {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.RNA-Seq.chimeric.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.chimeric.gdc_realn.bam 107094388 BAM chimeric harmonized CPTAC3 695b1c20-df43-4b00-a41f-2dbb74616b51 a18dae88cf214917979ed6557076c08d {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.RNA-Seq.genomic.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.genomic.gdc_realn.bam 8021143089 BAM genomic harmonized CPTAC3 3957fa69-3161-4368-8db1-11b689f1b1e1 299a7b23ad190b470301243651e5feaa {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.RNA-Seq.S8_L002_R1.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 3984018859 FASTQ S8_L002_R1 unaligned CPTAC3 22f88357-a1a0-4130-9373-ede06a3ee0d8 18c33a95fd2bb3c6770241ae08fac556 {"aliquot_tag": "ALQ_b5af9304", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.RNA-Seq.S8_L002_R2.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4397216742 FASTQ S8_L002_R2 unaligned CPTAC3 44c74e6a-9e07-4895-9db3-443802ec3baa 812c73313915a7eab1a7e33772a0d293 {"aliquot_tag": "ALQ_b5af9304", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.RNA-Seq.transcriptome.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.transcriptome.gdc_realn.bam 10281809039 BAM transcriptome harmonized CPTAC3 ac125192-2b26-453c-97aa-acbe528d68b3 019a5f380e6f847f1c1a1d1c4715f718 {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.WGS.Tbm C3L-06361 AML WGS tumor_bone_marrow CPT0345610002 CPT0345610002.WholeGenome.RP-2158.bam 49357606952 BAM aligned CPTAC3 aa2fa1d3-f026-4c30-8499-199097ec3d65 352b8105c86ead1db8d2042cc202a04e {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.WGS.Tbm.hg38 C3L-06361 AML WGS tumor_bone_marrow CPT0345610002 2ad00ca6-3988-4545-b340-4d7bf367c999_wgs_gdc_realn.bam 138306388754 BAM harmonized CPTAC3 3f00b827-56dc-41a1-ad3b-6c22d7f9b007 5136acbb7f2d201071b0466b7c5ec7c7 {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.WXS.Nbc C3L-06361 AML WXS buccal_normal CPT0345580003 CPT0345580003.WholeExome.RP-1303.bam 27053926560 BAM aligned CPTAC3 4f572ab2-fc2c-4c3a-b01c-02ec710a6feb bb1237acc17d97af65ec94e3cdadeb49 {"aliquot_tag": "ALQ_e8cc99d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06361.WXS.Nbc.hg38 C3L-06361 AML WXS buccal_normal CPT0345580003 b6af685c-5835-4a9f-9122-16af2393145e_wxs_gdc_realn.bam 36905068313 BAM harmonized CPTAC3 da2e2061-120f-44eb-90c4-e49d0abe0df4 190120d37819b67c2e582ddbd338b746 {"aliquot_tag": "ALQ_e8cc99d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06361.WXS.Tbm C3L-06361 AML WXS tumor_bone_marrow CPT0345610002 CPT0345610002.WholeExome.RP-1303.bam 27276242048 BAM aligned CPTAC3 7ce15406-83cc-4f64-b510-0b5e8f057478 9199c51b80fd428ba6fffd49357c6f15 {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06361.WXS.Tbm.hg38 C3L-06361 AML WXS tumor_bone_marrow CPT0345610002 2ad00ca6-3988-4545-b340-4d7bf367c999_wxs_gdc_realn.bam 38548533226 BAM harmonized CPTAC3 7b21cc41-fe38-43fe-b81c-d4a64da6761a f4882f757eb174e63d45807612423aaf {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.MethArray.Green.Tbm C3L-06364 AML Methylation_Array tumor_bone_marrow CPT0345720002 205555390174_R03C01_Grn.idat 13677965 IDAT Green NA CPTAC3 c522cd8e-5d65-4836-b04e-60da756a483a 02ff8cd072e47c4e002c6ffd974f149d {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.MethArray.Red.Tbm C3L-06364 AML Methylation_Array tumor_bone_marrow CPT0345720002 205555390174_R03C01_Red.idat 13677965 IDAT Red NA CPTAC3 63957fb6-4554-48ee-a110-778652c31dab d1728eb2c00a9d424761f00f25ee9fae {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.miRNA-Seq.S23_L007_R1.Tbm C3L-06364 AML miRNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC31-K00269_0297_AHKCFKBBXY_GATCAG_S23_L007_R1_001.unaln.bam 224232551 BAM S23_L007_R1 unaligned CPTAC3 73d5f6bc-fe37-479d-b327-e7f24101a6c2 e57566fbe1e788407f37dfd0145dfece {"aliquot_tag": "ALQ_43936911", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.miRNA-Seq.Tbm.hg38 C3L-06364 AML miRNA-Seq tumor_bone_marrow CPT0345730002 48fe5fe7-03cc-4705-97c8-31b0d81575d7_mirnaseq_gdc_realn.bam 240428330 BAM harmonized CPTAC3 f362b63a-0c7c-4d33-870c-e9c1e276ed6d 118ab3b987a29129b0e6826060970b8e {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.RNA-Seq.chimeric.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.chimeric.gdc_realn.bam 120990307 BAM chimeric harmonized CPTAC3 77948801-8269-4c0a-89d3-a7eadd55bc93 6653fcdeebbd772fd274832a451c16c1 {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.RNA-Seq.genomic.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.genomic.gdc_realn.bam 7744140655 BAM genomic harmonized CPTAC3 3befe369-969b-4fd4-8002-7aa189f89d63 901d58034c1e378846d1918aa73ae5eb {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.RNA-Seq.S1_L001_R1.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3941468854 FASTQ S1_L001_R1 unaligned CPTAC3 8d2c68f5-5586-4a61-8ade-0ab1e8ed4aee dcaf4ab825c872381ff275c73ea402f0 {"aliquot_tag": "ALQ_43936911", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.RNA-Seq.S1_L001_R2.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4473539092 FASTQ S1_L001_R2 unaligned CPTAC3 bae466cc-d600-4db8-a4bb-915e6fac032f cf8cafed52e63a567ad7f6430630b71b {"aliquot_tag": "ALQ_43936911", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.RNA-Seq.transcriptome.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.transcriptome.gdc_realn.bam 8510092506 BAM transcriptome harmonized CPTAC3 93b1a0ac-ae22-4d49-9bb4-c3b3860c0c05 a4ed99f767e3350d7370e012e62638f7 {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.WGS.Nbc C3L-06364 AML WGS buccal_normal CPT0345690003 CPT0345690003.WholeGenome.RP-2158.bam 55619170776 BAM aligned CPTAC3 c97c6d20-7a47-4ad9-91dd-feb8aa5f128e 451147fbf31f9aab98861ee7f03c4058 {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06364.WGS.Nbc.hg38 C3L-06364 AML WGS buccal_normal CPT0345690003 9b14a9ae-a157-467e-9dec-3fe18c5de85b_wgs_gdc_realn.bam 164724639010 BAM harmonized CPTAC3 04197309-7cc3-4385-a294-284c8c7e108d e1b301405b272c42f49074b3282f03ae {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06364.WGS.Tbm C3L-06364 AML WGS tumor_bone_marrow CPT0345720002 CPT0345720002.WholeGenome.RP-2158.bam 56104990151 BAM aligned CPTAC3 2697576c-ea04-464a-b67a-c9a4a815e192 6ef8acd5750d23e739d61eb794f66008 {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.WGS.Tbm.hg38 C3L-06364 AML WGS tumor_bone_marrow CPT0345720002 6ad00ada-9022-47e2-bcc0-6e89ebadd037_wgs_gdc_realn.bam 157591079901 BAM harmonized CPTAC3 d61d96da-f617-4d13-adae-d615f336047c fdb57025282c6e3d4468c541fb3a5243 {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.WXS.Nbc C3L-06364 AML WXS buccal_normal CPT0345690003 CPT0345690003.WholeExome.RP-1303.bam 23109004460 BAM aligned CPTAC3 21ebf814-ea24-49fe-96fb-3e567393d3c7 7c503dd28f46ec3cf3a92269d0a8fdbf {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06364.WXS.Nbc.hg38 C3L-06364 AML WXS buccal_normal CPT0345690003 9b14a9ae-a157-467e-9dec-3fe18c5de85b_wxs_gdc_realn.bam 32230780864 BAM harmonized CPTAC3 781cad08-5f3f-483a-b56a-0415097dd98e 7847840ddd16d3617515a46a3d254ffa {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06364.WXS.Tbm C3L-06364 AML WXS tumor_bone_marrow CPT0345720002 CPT0345720002.WholeExome.RP-1303.bam 22350725679 BAM aligned CPTAC3 27ffd892-f056-4e29-bdec-908c4cf746e4 1d78cf0c06a59d68d9a499ca374eb652 {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06364.WXS.Tbm.hg38 C3L-06364 AML WXS tumor_bone_marrow CPT0345720002 6ad00ada-9022-47e2-bcc0-6e89ebadd037_wxs_gdc_realn.bam 30566871238 BAM harmonized CPTAC3 4ddad72e-d954-4d7d-a59e-20d0ddcbd7f5 5a47228d1a6e5c5ed7bd922f0d2038aa {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.MethArray.Green.Tbm C3L-06367 AML Methylation_Array tumor_bone_marrow CPT0410800002 205555380155_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7964f20a-77f4-41d4-aa4b-5d0c5cb4a69f 4894a21cc7771c258f63901f773f0113 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.MethArray.Red.Tbm C3L-06367 AML Methylation_Array tumor_bone_marrow CPT0410800002 205555380155_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 72159bbb-4cf6-4d11-afa6-79a588e0a392 623e2a6d8619cb25b3b41976b439bd8c {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.miRNA-Seq.S28_L005_R1.Tbm C3L-06367 AML miRNA-Seq tumor_bone_marrow CPT0410810002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACGAT_S28_L005_R1_001.unaln.bam 315340165 BAM S28_L005_R1 unaligned CPTAC3 85d9e70e-cebd-402d-8fea-b048242b92cc d0b8ffbe05511c3b9f515a24a0832861 {"aliquot_tag": "ALQ_b6bcc4ae", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.miRNA-Seq.Tbm.hg38 C3L-06367 AML miRNA-Seq tumor_bone_marrow CPT0410810002 d90e8127-5f30-494b-afcb-64958f64cc98_mirnaseq_gdc_realn.bam 330680350 BAM harmonized CPTAC3 75176985-d4b1-41a5-bb18-a366b02db27f 341a2081635ec71688ee156a1198c831 {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.RNA-Seq.chimeric.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.chimeric.gdc_realn.bam 273932961 BAM chimeric harmonized CPTAC3 6486f27b-4f86-4e7f-a7a3-2b4926f29b10 a598d5d0eb325ac0fde798626e500caf {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.RNA-Seq.genomic.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.genomic.gdc_realn.bam 9396216656 BAM genomic harmonized CPTAC3 7bf853f8-ccc2-4120-b90b-317bfbeb65ad bf65b55b73fc63a3af1a86dc1f9306fa {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.RNA-Seq.S1_L001_R1.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4138889339 FASTQ S1_L001_R1 unaligned CPTAC3 9fb2e454-11e7-44fd-97a5-abd68cc50890 55846c6451f92b1aba9189bd815d7705 {"aliquot_tag": "ALQ_b6bcc4ae", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.RNA-Seq.S1_L001_R2.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4468004169 FASTQ S1_L001_R2 unaligned CPTAC3 9ff587b2-7250-4cae-b7f7-6be208c9ae33 a097268f192849724904d6ade5eded45 {"aliquot_tag": "ALQ_b6bcc4ae", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.RNA-Seq.transcriptome.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.transcriptome.gdc_realn.bam 8002086940 BAM transcriptome harmonized CPTAC3 7a5e3e6b-ffff-4642-9732-89f4c008a725 aba62f6ab3111edd3fee7f7f67dc1392 {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.WGS.Nbc C3L-06367 AML WGS buccal_normal CPT0410770001 CPT0410770001.WholeGenome.RP-2158.bam 70332252193 BAM aligned CPTAC3 7a527476-40ff-4e19-b840-d01296c606f2 846fd555ce9920a3102db4ad68a26972 {"aliquot_tag": "ALQ_51a3d261", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06367.WGS.Nbc.hg38 C3L-06367 AML WGS buccal_normal CPT0410770001 0190064e-4d63-40c7-819c-93065350c542_wgs_gdc_realn.bam 203628893400 BAM harmonized CPTAC3 d72473d5-e10f-4d2c-967b-af4c443685bd a187d85ecb071caecac48f8c5083db32 {"aliquot_tag": "ALQ_51a3d261", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06367.WGS.Tbm C3L-06367 AML WGS tumor_bone_marrow CPT0410800002 CPT0410800002.WholeGenome.RP-2158.bam 57348951676 BAM aligned CPTAC3 1566b940-537d-4efe-91ee-66543cfb56c1 f3126bde2ccef04c96024dee388cef09 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.WGS.Tbm.hg38 C3L-06367 AML WGS tumor_bone_marrow CPT0410800002 99b6afa0-9d8a-46f6-8038-5c90c81079a0_wgs_gdc_realn.bam 168586222152 BAM harmonized CPTAC3 4b683e0d-6960-41cb-99c1-ed1ab9efa601 11c565325622546b20e89f13d6a8d8e6 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.WXS.Tbm C3L-06367 AML WXS tumor_bone_marrow CPT0410800002 CPT0410800002.WholeExome.RP-1303.bam 17821458501 BAM aligned CPTAC3 8f18a1d8-32c5-4ec1-8e64-f71fa919e4d7 e2281a5f9689cb4e947122b2a8c85822 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06367.WXS.Tbm.hg38 C3L-06367 AML WXS tumor_bone_marrow CPT0410800002 99b6afa0-9d8a-46f6-8038-5c90c81079a0_wxs_gdc_realn.bam 24544292588 BAM harmonized CPTAC3 1a49636a-6a49-406e-8e41-a7c17b19b084 9e0e8462f691eb64e5c15098a31c8439 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.MethArray.Green.Tpb C3L-06368 AML Methylation_Array tumor_peripheral_blood CPT0410410002 205705520128_R06C01_Grn.idat 13677886 IDAT Green NA CPTAC3 51fdafb1-e612-4aad-9827-910512d68387 6c6e638bb9a946f266fd5f8947429521 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06368.MethArray.Red.Tpb C3L-06368 AML Methylation_Array tumor_peripheral_blood CPT0410410002 205705520128_R06C01_Red.idat 13677886 IDAT Red NA CPTAC3 de5be602-4db6-4f55-8327-b84108002dad aaf53265efc3bd175dcddba410c8cd56 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06368.miRNA-Seq.S43_L003_R1.Tbm C3L-06368 AML miRNA-Seq tumor_bone_marrow CPT0410390002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATGAGC_S43_L003_R1_001.unaln.bam 194735341 BAM S43_L003_R1 unaligned CPTAC3 b1f4e05f-6025-4a3c-8e7b-8178a1fc763b 8b58a5cfaeee08fb791c6d354d0a553e {"aliquot_tag": "ALQ_ec0b7fac", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.miRNA-Seq.Tbm.hg38 C3L-06368 AML miRNA-Seq tumor_bone_marrow CPT0410390002 34388533-55c7-4511-b90c-ae46f922d89f_mirnaseq_gdc_realn.bam 215482150 BAM harmonized CPTAC3 9ba5b742-39d0-487d-818d-45d243a1d61a 73cf8b1d45fe4d1e5bb4e7d139c068dd {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.RNA-Seq.chimeric.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.chimeric.gdc_realn.bam 807659166 BAM chimeric harmonized CPTAC3 410c254d-68bc-49e7-bc77-17fede4bbedb e37fd2b0d2c67dc1fdc72588fb1cb01a {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.RNA-Seq.genomic.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.genomic.gdc_realn.bam 8147258324 BAM genomic harmonized CPTAC3 d83aa4ed-0be6-4aa6-9afe-ca6f13c60cef 80d8b53938bb0cf47d19d366fa77464b {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.RNA-Seq.S20_L005_R1.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4032905959 FASTQ S20_L005_R1 unaligned CPTAC3 8d70e8fc-2f6a-4da7-8a13-3cb09163563d f2ace103a3847a835121350e659065ef {"aliquot_tag": "ALQ_ec0b7fac", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.RNA-Seq.S20_L005_R2.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 4345871199 FASTQ S20_L005_R2 unaligned CPTAC3 08b3a1d2-9038-4e93-b052-9438bf1ec5cd eef8682bdafdf5c9cc67c32ba9547b1a {"aliquot_tag": "ALQ_ec0b7fac", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.RNA-Seq.transcriptome.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.transcriptome.gdc_realn.bam 7621681346 BAM transcriptome harmonized CPTAC3 112bc06b-307d-4858-a8cf-c2cd850851a0 3a1d3ff998b3819aa6739054d3e10f2f {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06368.WGS.Nbc C3L-06368 AML WGS buccal_normal CPT0410360001 CPT0410360001.WholeGenome.RP-2158.bam 48116149732 BAM aligned CPTAC3 20cfe70e-f74a-44be-98fb-10650f5bbc25 65d229cd519bb74e46e19dec40445755 {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06368.WGS.Nbc.hg38 C3L-06368 AML WGS buccal_normal CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wgs_gdc_realn.bam 141822168429 BAM harmonized CPTAC3 34caf708-795e-4b5b-9aa0-f958cc5dfdb0 aa8e36cc428a58dc58ba222c602338fd {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06368.WGS.Tpb C3L-06368 AML WGS tumor_peripheral_blood CPT0410410002 CPT0410410002.WholeGenome.RP-2158.bam 47832096739 BAM aligned CPTAC3 178f44ea-57cf-4254-9d8e-27e8779aa3bb 2c7bde4ecd791172592c9e8651d57944 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06368.WGS.Tpb.hg38 C3L-06368 AML WGS tumor_peripheral_blood CPT0410410002 bb9ec808-6239-4353-950e-64991f8acfa6_wgs_gdc_realn.bam 142409916076 BAM harmonized CPTAC3 09a49042-9bfb-4c24-9643-e4c0de3a62d6 ab759607d1e500e074b06c5d1f67c5f4 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06368.WXS.Nbc C3L-06368 AML WXS buccal_normal CPT0410360001 CPT0410360001.WholeExome.RP-1303.bam 26741144956 BAM aligned CPTAC3 098dfaad-ee4e-466b-9eb8-2a84b87448de d999251a7c96802fee7562a4099639f6 {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06368.WXS.Nbc.hg38 C3L-06368 AML WXS buccal_normal CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wxs_gdc_realn.bam 37045085962 BAM harmonized CPTAC3 431be984-ae6d-416d-9841-1b56a4ceeb6f 82d976da9b89640bc1b1e5f70754d678 {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06368.WXS.Tpb C3L-06368 AML WXS tumor_peripheral_blood CPT0410410002 CPT0410410002.WholeExome.RP-1303.bam 23108226840 BAM aligned CPTAC3 f5f139b6-1ad1-4f89-b0f3-6d3ec420c787 4100af9a26238b994c753f4a543bc6a4 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06368.WXS.Tpb.hg38 C3L-06368 AML WXS tumor_peripheral_blood CPT0410410002 bb9ec808-6239-4353-950e-64991f8acfa6_wxs_gdc_realn.bam 32288108727 BAM harmonized CPTAC3 4c8d49db-dfe8-477a-b33d-903a587afed1 b276c55b8b29e3c2b608d5eef5b3aef6 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06369.MethArray.Green.Tbm C3L-06369 AML Methylation_Array tumor_bone_marrow CPT0413490002 204930640111_R06C01_Grn.idat 13677960 IDAT Green NA CPTAC3 522a2b24-cc1c-443d-9b16-2a220f253e1f 258a2babf8a5a16df95985d21943720e {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.MethArray.Red.Tbm C3L-06369 AML Methylation_Array tumor_bone_marrow CPT0413490002 204930640111_R06C01_Red.idat 13677960 IDAT Red NA CPTAC3 e073afad-a137-4894-bf4a-f9479cb63425 55798a5fc680b56dce0f2fd9047237cc {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.miRNA-Seq.S30_L005_R1.Tbm C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAGGCG_S30_L005_R1_001.unaln.bam 256246836 BAM S30_L005_R1 unaligned CPTAC3 35fe6185-a3ca-4b08-8bef-bc1cd2c9e803 43428c20c9ac5ca3532f8c614c9a420f {"aliquot_tag": "ALQ_6aae45d", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.miRNA-Seq.S8_L003_R1.Tbm C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L003_R1_001.unaln.bam 178546103 BAM S8_L003_R1 unaligned CPTAC3 2dff295d-0f3c-43e7-a8fb-7754dd89cdeb ef4eeeefd93667c9b1f48761527e9def {"aliquot_tag": "ALQ_6aae45d", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.miRNA-Seq.Tbm.hg38 C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 2de7aa7a-fec0-4fb2-a267-e21d1c07f937_mirnaseq_gdc_realn.bam 492243280 BAM harmonized CPTAC3 4e5e0167-0700-4c1a-a059-07939f66453b 6f531c0a7250ad33baa772fc8ffa12de {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.RNA-Seq.chimeric.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.chimeric.gdc_realn.bam 171308726 BAM chimeric harmonized CPTAC3 ef4b4d1f-8171-474b-bef1-4601d77ac646 357219ea0156ed99fe904aaf6502f875 {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.RNA-Seq.genomic.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.genomic.gdc_realn.bam 8169511634 BAM genomic harmonized CPTAC3 d04625b0-1734-4b32-a491-4d827683931e 9d71734568ab20197fdfb5ece5fe51d4 {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.RNA-Seq.S2_L001_R1.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R1_001.fastq.gz 3884976741 FASTQ S2_L001_R1 unaligned CPTAC3 8912632e-66df-420c-9db6-8a5138fffedd 170ab207cb2a517772a3b80b80e2004e {"aliquot_tag": "ALQ_6aae45d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.RNA-Seq.S2_L001_R2.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R2_001.fastq.gz 4137092013 FASTQ S2_L001_R2 unaligned CPTAC3 0d4ca071-c2ec-480b-ac31-4f78236b2d52 b3bfbb83b19434241407f650f16df045 {"aliquot_tag": "ALQ_6aae45d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.RNA-Seq.transcriptome.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.transcriptome.gdc_realn.bam 8629812377 BAM transcriptome harmonized CPTAC3 096ade43-5be6-4521-8bc6-a3a4e284702e 7ce57c9c3595bc72ca7fe673715659ed {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.WGS.Nbc C3L-06369 AML WGS buccal_normal CPT0413430001 CPT0413430001.WholeGenome.RP-2158.bam 90358839926 BAM aligned CPTAC3 4b08e6fe-6570-4985-ad1b-4993b6caa2ad 7c0480b4c2ee52b7b8a433343b70ae2a {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06369.WGS.Nbc.hg38 C3L-06369 AML WGS buccal_normal CPT0413430001 1082aa55-703a-44cd-b5c1-ef42b3954cd1_wgs_gdc_realn.bam 494553510166 BAM harmonized CPTAC3 d4778278-deab-47c4-8cad-3ad89a813df0 110aaca0b808def1cdd1863aec7b4b39 {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06369.WGS.Tbm C3L-06369 AML WGS tumor_bone_marrow CPT0413490002 CPT0413490002.WholeGenome.RP-2158.bam 63096923730 BAM aligned CPTAC3 76d51868-9bc4-4bc0-a627-c844a0da6823 08afcd6e8a7d3c32d8f90e32ef931dda {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.WGS.Tbm.hg38 C3L-06369 AML WGS tumor_bone_marrow CPT0413490002 12154a7c-6e25-40b7-93b5-1654c581800f_wgs_gdc_realn.bam 177220469953 BAM harmonized CPTAC3 d93cf91b-6505-4604-90a9-1ed7919a25f7 c2ac69aa6a22b98ee45a5b95905fb22e {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.WXS.Nbc C3L-06369 AML WXS buccal_normal CPT0413430001 CPT0413430001.WholeExome.RP-1303.bam 21323478910 BAM aligned CPTAC3 0d5bd0c8-e049-404f-ad52-37f068846c95 d7ab9af2d1532c6a4d7594c011856a69 {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06369.WXS.Nbc.hg38 C3L-06369 AML WXS buccal_normal CPT0413430001 1082aa55-703a-44cd-b5c1-ef42b3954cd1_wxs_gdc_realn.bam 30834556167 BAM harmonized CPTAC3 cfec7a25-deba-47ba-baa1-a98913007129 d9a50acca81e5537b289aaaa459f55ca {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06369.WXS.Tbm C3L-06369 AML WXS tumor_bone_marrow CPT0413490002 CPT0413490002.WholeExome.RP-1303.bam 31546652914 BAM aligned CPTAC3 a6e83226-bc0a-4f03-b3bc-62b3929a05b8 92eb1b3a33afdb8bc7de2b2b58fb955c {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06369.WXS.Tbm.hg38 C3L-06369 AML WXS tumor_bone_marrow CPT0413490002 12154a7c-6e25-40b7-93b5-1654c581800f_wxs_gdc_realn.bam 43962325870 BAM harmonized CPTAC3 2a646771-d8fc-4833-807f-d3ee0871497a 2bcd1f62fdc3864cc48cc0c5e8c0f100 {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.MethArray.Green.Tbm C3L-06374 AML Methylation_Array tumor_bone_marrow CPT0410490002 205555380130_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a9fc2d6b-5f31-4ea5-9d1c-3f2874bf414b 83de0b292257a695f19d1694d8ecc9c2 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.MethArray.Red.Tbm C3L-06374 AML Methylation_Array tumor_bone_marrow CPT0410490002 205555380130_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 d1c39678-a4e4-4c3c-a0c7-57da3db62f18 9e7fa92560f4afde361bce5573d7bd63 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.miRNA-Seq.S26_L005_R1.Tbm C3L-06374 AML miRNA-Seq tumor_bone_marrow CPT0410500002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAACTA_S26_L005_R1_001.unaln.bam 290243249 BAM S26_L005_R1 unaligned CPTAC3 fefa4d0a-c2a6-4caf-a008-3e4bc479fa4b a72aa2f45ed1e046f2fb705be6b4ed8f {"aliquot_tag": "ALQ_3742fec0", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.miRNA-Seq.Tbm.hg38 C3L-06374 AML miRNA-Seq tumor_bone_marrow CPT0410500002 223ca80a-27ec-4822-9ca4-2ccc964a7db2_mirnaseq_gdc_realn.bam 307626820 BAM harmonized CPTAC3 20e9ca79-b6dd-487c-8ef2-1ba49614f5d4 9e27e22ed921d61561c6a2e508c18ea5 {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.RNA-Seq.chimeric.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.chimeric.gdc_realn.bam 164415708 BAM chimeric harmonized CPTAC3 85c96197-b9c4-4026-9f05-f693cdef6ac4 d660d81c7e62c507c25bc416597b9d7a {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.RNA-Seq.genomic.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.genomic.gdc_realn.bam 7829029834 BAM genomic harmonized CPTAC3 5c1d1201-f2ce-4c4f-9c91-aa488d405f69 5f86b67b1caf4e151a5acd4a0548146e {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.RNA-Seq.S5_L002_R1.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R1_001.fastq.gz 3221254222 FASTQ S5_L002_R1 unaligned CPTAC3 23a53be6-2568-49b6-9e77-cb0f8b763b6f 072da92e00d69c28841df98b01acdbc6 {"aliquot_tag": "ALQ_3742fec0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.RNA-Seq.S5_L002_R2.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R2_001.fastq.gz 3406264208 FASTQ S5_L002_R2 unaligned CPTAC3 210f1b92-20ce-4c76-b450-9070622728bd 606f32246f32cd2c48ab0c5373ea1895 {"aliquot_tag": "ALQ_3742fec0", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.RNA-Seq.transcriptome.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.transcriptome.gdc_realn.bam 6452721731 BAM transcriptome harmonized CPTAC3 97ab067e-3c19-4a8d-9272-0278f4b61c91 a81359e8936e5d5b06b73dce4ce308b6 {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.WGS.Nbc C3L-06374 AML WGS buccal_normal CPT0410460001 CPT0410460001.WholeGenome.RP-2158.bam 63282359480 BAM aligned CPTAC3 472cfeef-4a15-4b7b-9686-9d69d263906e 1aeeec8478925dff873903012d8917ef {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06374.WGS.Nbc.hg38 C3L-06374 AML WGS buccal_normal CPT0410460001 2cb5354f-1075-45c3-9267-37753db6669a_wgs_gdc_realn.bam 195481200931 BAM harmonized CPTAC3 1baab9c9-7a4f-40c9-9873-5fa78856e42e d71e2fc2e00ba688f0210c82f92e3a16 {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06374.WGS.Tbm C3L-06374 AML WGS tumor_bone_marrow CPT0410490002 CPT0410490002.WholeGenome.RP-2158.bam 49038355116 BAM aligned CPTAC3 577bed74-6195-411f-bf24-480919dfd25f 1ab58596cd4da3be567d8099557ce07c {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.WGS.Tbm.hg38 C3L-06374 AML WGS tumor_bone_marrow CPT0410490002 c35ea67c-6c16-44b1-8863-aaeaf66865f5_wgs_gdc_realn.bam 144070968583 BAM harmonized CPTAC3 5a782fa9-d539-48e4-bdea-eee86f280403 16637c53fae8dbc7112f7460cb018366 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.WXS.Nbc C3L-06374 AML WXS buccal_normal CPT0410460001 CPT0410460001.WholeExome.RP-1303.bam 16175292772 BAM aligned CPTAC3 f99875f0-0ec0-4c4c-aadb-fb4c75b3a7ee 06402203eff5e7b0d8ce255fcfc4cfee {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06374.WXS.Nbc.hg38 C3L-06374 AML WXS buccal_normal CPT0410460001 2cb5354f-1075-45c3-9267-37753db6669a_wxs_gdc_realn.bam 22379237818 BAM harmonized CPTAC3 91de498d-bc4c-4448-a7ec-eda0c295ee08 8ceffed281e095f0e3bd152f4a06071f {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06374.WXS.Tbm C3L-06374 AML WXS tumor_bone_marrow CPT0410490002 CPT0410490002.WholeExome.RP-1303.bam 21485741240 BAM aligned CPTAC3 1d77d4ec-a6be-4ae2-99e8-e5fde773b0eb 4b0743606f7667c3a3b0eaa035455e92 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06374.WXS.Tbm.hg38 C3L-06374 AML WXS tumor_bone_marrow CPT0410490002 c35ea67c-6c16-44b1-8863-aaeaf66865f5_wxs_gdc_realn.bam 29720041722 BAM harmonized CPTAC3 9904b87f-a661-42a8-ad84-d5d7395609c8 6142f0fc39e63dce5dd96cd5c0165297 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06386.MethArray.Green.Tbm C3L-06386 AML Methylation_Array tumor_bone_marrow CPT0410910002 205987770157_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 663418eb-4f58-43a8-8e91-5cef6f495ee0 2875677fd35d948ab0df55aa376d7f94 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06386.MethArray.Red.Tbm C3L-06386 AML Methylation_Array tumor_bone_marrow CPT0410910002 205987770157_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 547a1784-0630-4f52-b4b8-c68dfa9be51b 1d4ff71b9635d27ae411dda848cc9fce {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06386.miRNA-Seq.S10_L003_R1.Tpb C3L-06386 AML miRNA-Seq tumor_peripheral_blood CPT0410940002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L003_R1_001.unaln.bam 264627191 BAM S10_L003_R1 unaligned CPTAC3 db9724a6-3c51-44aa-a1d3-3923f3538b69 a758fadfea7c7667821ef3a459f8a590 {"aliquot_tag": "ALQ_b500987b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06386.miRNA-Seq.Tpb.hg38 C3L-06386 AML miRNA-Seq tumor_peripheral_blood CPT0410940002 6461073a-bd3f-4f5e-8b0e-dd076f718a89_mirnaseq_gdc_realn.bam 295263291 BAM harmonized CPTAC3 e572c156-0666-44b7-a291-c2bae03ee386 712e5191ddd5b7d291e75c3e6f038c0e {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06386.RNA-Seq.chimeric.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.chimeric.gdc_realn.bam 508901076 BAM chimeric harmonized CPTAC3 86fc3ce6-7eff-4847-99df-744f9c9941fb 3fe1e4b86a87f59d8ba7496afedb5440 {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06386.RNA-Seq.genomic.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.genomic.gdc_realn.bam 7738238602 BAM genomic harmonized CPTAC3 6b8bd0ad-d2c6-464b-b55d-9e69a7bdf993 ab6932db33b0b041e9564e0dd16fcb90 {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06386.RNA-Seq.S29_L008_R1.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R1_001.fastq.gz 3700088810 FASTQ S29_L008_R1 unaligned CPTAC3 455d60e4-3183-4728-a235-10f3a9e8adf1 3bde5066fd570fce5aa0d18074bff631 {"aliquot_tag": "ALQ_b500987b", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06386.RNA-Seq.S29_L008_R2.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R2_001.fastq.gz 4159174920 FASTQ S29_L008_R2 unaligned CPTAC3 6934ddbf-b5e2-4486-8c78-acc7e79ad220 9f3b36271dc8fbdff2e29cd4e075702d {"aliquot_tag": "ALQ_b500987b", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06386.RNA-Seq.transcriptome.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.transcriptome.gdc_realn.bam 8401038038 BAM transcriptome harmonized CPTAC3 51d25ba6-46c0-4f81-b89f-51116beed76d b02f50fa91eecac959ce7e5d18e1eb79 {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06386.WGS.Tbm C3L-06386 AML WGS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeGenome.RP-2158.bam 60724679059 BAM aligned CPTAC3 db94e33f-628c-485b-9d68-a032ec9f8645 303c4f9249722ef33a74b8b9c1e61dc1 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06386.WGS.Tbm.hg38 C3L-06386 AML WGS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wgs_gdc_realn.bam 179870048993 BAM harmonized CPTAC3 aefacc29-6b93-498b-9181-01aa353cb850 d2860289b2a4eecfa9b302e8464b0886 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06386.WXS.Nbc C3L-06386 AML WXS buccal_normal CPT0410880001 CPT0410880001.WholeExome.RP-1303.bam 24541841088 BAM aligned CPTAC3 3e172815-ce0f-4c40-9294-d81ddb72b56a 828bab49374b4aeadcff85adea442406 {"aliquot_tag": "ALQ_22a5f765", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06386.WXS.Nbc.hg38 C3L-06386 AML WXS buccal_normal CPT0410880001 c432125d-2453-4449-a6dd-ae35376eb87f_wxs_gdc_realn.bam 34749480704 BAM harmonized CPTAC3 27966373-38a4-4697-8eda-28539d19e5c6 1727d000f969394e9d9037f868a7d107 {"aliquot_tag": "ALQ_22a5f765", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06386.WXS.Tbm C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeExome.RP-1303.bam 30377003817 BAM aligned CPTAC3 6d231bd0-0b90-45fb-be2e-c250cb554e7c 75c64f3b29c3ec79cd7a50bd96633565 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06386.WXS.Tbm.hg38 C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wxs_gdc_realn.bam 42237742138 BAM harmonized CPTAC3 73f8f70a-98d4-4df8-89f2-596e281d1dc7 36e60a84e228d0dfe7cc5f2222e85c3e {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.MethArray.Green.Tbm C3L-06534 AML Methylation_Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6afaf6c3-283a-4238-96e3-efbfa196ea4f ca475f5a1f5644658b12474b91e8a12c {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.MethArray.Red.Tbm C3L-06534 AML Methylation_Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 c8ba1d9e-66d0-4570-a96d-1bf67567e4e4 74e1fdfe870f4c69cfc627d16fee2f9c {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.miRNA-Seq.S49_L008_R1.Tbm C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTAGCT_S49_L008_R1_001.unaln.bam 280032746 BAM S49_L008_R1 unaligned CPTAC3 a0f1ca8f-7fb4-4b4b-8a7f-1bd43737e2ad 7e11b732e12156a5cbd301fa63a4a7ad {"aliquot_tag": "ALQ_be571300", "sample": "S49", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.miRNA-Seq.Tbm.hg38 C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 67f6f645-44b1-4009-bc83-1246e7ce7e8f_mirnaseq_gdc_realn.bam 294963728 BAM harmonized CPTAC3 4602960c-f086-4ee9-afe0-2a4d1f6af971 a7cd0a4d8d7947af0e92825d12f0abf1 {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.RNA-Seq.chimeric.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.chimeric.gdc_realn.bam 85631606 BAM chimeric harmonized CPTAC3 655685d3-c81d-40ee-b009-11fcbf2f2322 deac35516aa696c6b7381babd466c3f0 {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.RNA-Seq.genomic.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.genomic.gdc_realn.bam 9307738152 BAM genomic harmonized CPTAC3 b773828c-4a01-41d0-8517-f5be2318d319 855437377c21c2e532ad13a8e0b2812f {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.RNA-Seq.S23_L006_R1.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R1_001.fastq.gz 3659338538 FASTQ S23_L006_R1 unaligned CPTAC3 5c9407bd-fb2c-4630-a594-3fe9336a1fdb cb5a5791aaea4db511a4bbc5eb0e1ca1 {"aliquot_tag": "ALQ_be571300", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.RNA-Seq.S23_L006_R2.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R2_001.fastq.gz 3950808227 FASTQ S23_L006_R2 unaligned CPTAC3 98809bf4-4138-472c-a8ac-931b6daef006 9e3d51463b7eb1995abc0aba7da41d39 {"aliquot_tag": "ALQ_be571300", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.RNA-Seq.transcriptome.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.transcriptome.gdc_realn.bam 9656059878 BAM transcriptome harmonized CPTAC3 e1630e5d-749e-4fe4-8c10-7df39de4e693 c4b74738ecc729640dcef93736a4334a {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.WGS.Tbm C3L-06534 AML WGS tumor_bone_marrow CPT0357310002 CPT0357310002.WholeGenome.RP-2158.bam 53750296037 BAM aligned CPTAC3 5f68c355-8c93-4d53-8508-c01ad7359159 10a2af2f5309a4b665b36b7376a3774e {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.WGS.Tbm.hg38 C3L-06534 AML WGS tumor_bone_marrow CPT0357310002 85fc96f8-1da0-4cc7-a2ee-a4a2b22d9dbd_wgs_gdc_realn.bam 160838961740 BAM harmonized CPTAC3 09add0e5-3e23-400f-83a9-4cb0530fd69a d1e07e6f3128b568c71856eeb1e82b1f {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.WXS.Tbm C3L-06534 AML WXS tumor_bone_marrow CPT0357310002 CPT0357310002.WholeExome.RP-1303.bam 22734389925 BAM aligned CPTAC3 b69d8593-791e-49ea-be41-4c59acdf3201 8cee1e4afee2989c35ddb619c1fa6382 {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06534.WXS.Tbm.hg38 C3L-06534 AML WXS tumor_bone_marrow CPT0357310002 85fc96f8-1da0-4cc7-a2ee-a4a2b22d9dbd_wxs_gdc_realn.bam 32181243333 BAM harmonized CPTAC3 30238c46-4635-4f2b-a172-aba09fac1872 43abe3d902d15776b71a3c1d53c95517 {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.MethArray.Green.Tbm C3L-06536 AML Methylation_Array tumor_bone_marrow CPT0357520002 205555390118_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4095dc5a-17f6-4344-80c9-15782116dd22 11f727449bd1fbce40c0adb46ec55033 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.MethArray.Red.Tbm C3L-06536 AML Methylation_Array tumor_bone_marrow CPT0357520002 205555390118_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 095f7cc1-e2ab-45e5-ab38-eee1efa59222 7b76cbd44c513b93f28f4e6850e8a3a0 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.miRNA-Seq.S50_L008_R1.Tbm C3L-06536 AML miRNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTATAC_S50_L008_R1_001.unaln.bam 205710341 BAM S50_L008_R1 unaligned CPTAC3 220c605b-1a19-4ac0-96e5-f368b9a3653a fde634bd078d3d506915cab62899dbc4 {"aliquot_tag": "ALQ_556ed9ad", "sample": "S50", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.miRNA-Seq.Tbm.hg38 C3L-06536 AML miRNA-Seq tumor_bone_marrow CPT0357530002 b4adf0b5-8a23-420d-9d51-0af7e28a6e38_mirnaseq_gdc_realn.bam 221516565 BAM harmonized CPTAC3 cb883ad8-5e32-4051-87ac-ee5fc30819c0 f5e2d68713c954990029a39e50c3cf13 {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.RNA-Seq.chimeric.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.chimeric.gdc_realn.bam 79895908 BAM chimeric harmonized CPTAC3 4500abf3-82b9-4262-aa6a-f708a4febf6d e60ece5ac1db7cf3fce2cb400e1a7ee1 {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.RNA-Seq.genomic.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.genomic.gdc_realn.bam 6448098497 BAM genomic harmonized CPTAC3 9c7b4d69-e8c0-4fbb-8aa7-85c14730d5d6 126c464fdf80adf5bc40e4b94dff073b {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.RNA-Seq.S22_L006_R1.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R1_001.fastq.gz 3216958952 FASTQ S22_L006_R1 unaligned CPTAC3 2f8b0a00-f2c6-45b7-a639-638866d2f1df 22ad3c5788cdbb3de82941ed5bfc4880 {"aliquot_tag": "ALQ_556ed9ad", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.RNA-Seq.S22_L006_R2.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R2_001.fastq.gz 3504158568 FASTQ S22_L006_R2 unaligned CPTAC3 57ee0236-540a-4ee1-988d-31a66667aa68 1095fe9da4fa5376a619a94d8212c15a {"aliquot_tag": "ALQ_556ed9ad", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.RNA-Seq.transcriptome.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.transcriptome.gdc_realn.bam 9774112709 BAM transcriptome harmonized CPTAC3 d5ea0534-0d1a-4f91-9f32-0fb7562e9269 d53dfa2bf4f5e9eb45fc38329080aeec {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.WGS.Nbc C3L-06536 AML WGS buccal_normal CPT0357490003 CPT0357490003.WholeGenome.RP-2158.bam 38595068533 BAM aligned CPTAC3 965bd8f8-64ed-4823-9ee7-80134f7c937d c69a121fe59be9f34b4da5c4a2416f2f {"aliquot_tag": "ALQ_a385223f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06536.WGS.Nbc.hg38 C3L-06536 AML WGS buccal_normal CPT0357490003 b5886ef8-aaae-46f8-9765-0aa2e77030ca_wgs_gdc_realn.bam 124125820790 BAM harmonized CPTAC3 d3eb1159-4ed5-4b4b-afc7-3121c141a45f 2747a94556661f7205e3634d6f7ad211 {"aliquot_tag": "ALQ_a385223f", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06536.WGS.Tbm C3L-06536 AML WGS tumor_bone_marrow CPT0357520002 CPT0357520002.WholeGenome.RP-2158.bam 45366010648 BAM aligned CPTAC3 6fef3dbc-be48-464d-8939-75bb841f4559 ff679e73639ab3c428e70d54a73096c4 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.WGS.Tbm.hg38 C3L-06536 AML WGS tumor_bone_marrow CPT0357520002 e5315cdd-85a2-425b-a51a-52ed0cbc72f3_wgs_gdc_realn.bam 136256114453 BAM harmonized CPTAC3 0819a42c-0ec4-4c56-9085-a5cefa866e5c c47d7177c8da4e5c3dbe81ac16702c8c {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.WXS.Tbm C3L-06536 AML WXS tumor_bone_marrow CPT0357520002 CPT0357520002.WholeExome.RP-1303.bam 27270072547 BAM aligned CPTAC3 70a73be2-0f69-4186-a265-f5d2441aff41 15b17281b75febfb25f7271cf3219460 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06536.WXS.Tbm.hg38 C3L-06536 AML WXS tumor_bone_marrow CPT0357520002 e5315cdd-85a2-425b-a51a-52ed0cbc72f3_wxs_gdc_realn.bam 38101929396 BAM harmonized CPTAC3 14fea685-7711-45e1-a4b0-462f06a63860 16b428d64c1e6bd7f9ddac8551bc21cf {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.MethArray.Green.Tbm C3L-06537 AML Methylation_Array tumor_bone_marrow CPT0357600002 205555390128_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6dbd8d4d-09cb-4552-af58-798afeb90ac6 d8568cd7d435098ce7d37d092a47719f {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.MethArray.Red.Tbm C3L-06537 AML Methylation_Array tumor_bone_marrow CPT0357600002 205555390128_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 6f5c89d7-28e1-497b-8cae-1998f8cede70 adf007a03117ab050254e38ae6c2e892 {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.miRNA-Seq.S51_L008_R1.Tbm C3L-06537 AML miRNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTCAGA_S51_L008_R1_001.unaln.bam 243110226 BAM S51_L008_R1 unaligned CPTAC3 66e5db0d-c4c2-4d9c-a04a-e9e4294c9068 45a48671d1a8317797e86261851e19f0 {"aliquot_tag": "ALQ_a93af863", "sample": "S51", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.miRNA-Seq.Tbm.hg38 C3L-06537 AML miRNA-Seq tumor_bone_marrow CPT0357610002 24ec0784-5b22-4bb0-9b01-6be10f455729_mirnaseq_gdc_realn.bam 256901843 BAM harmonized CPTAC3 31c070e5-1596-47b1-be93-a699ec366665 49169d3b9a1b171a768d18b6ed50845a {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.RNA-Seq.chimeric.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.chimeric.gdc_realn.bam 307773523 BAM chimeric harmonized CPTAC3 20ed2a26-a874-41a8-b2d1-165583591d6c f24e469693dd21a752eea23d1b11c106 {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.RNA-Seq.genomic.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.genomic.gdc_realn.bam 10325895462 BAM genomic harmonized CPTAC3 2065bc0b-232d-4535-ad21-dbf6c0db6c03 dc767e4e8afdfdbe6f7ea94176e1ede7 {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.RNA-Seq.S24_L006_R1.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 5177540250 FASTQ S24_L006_R1 unaligned CPTAC3 2129002c-5336-4aae-b19a-72c5e3c4f60b 7457178440554d3e3e74220364a6db7e {"aliquot_tag": "ALQ_a93af863", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.RNA-Seq.S24_L006_R2.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 5767583082 FASTQ S24_L006_R2 unaligned CPTAC3 8aaf31b8-a585-404c-aefa-a839c42b44b8 d8e0183011ddc25c8ef566d54d47a427 {"aliquot_tag": "ALQ_a93af863", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.RNA-Seq.transcriptome.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.transcriptome.gdc_realn.bam 12867965818 BAM transcriptome harmonized CPTAC3 34874eb9-d754-4924-ba70-4aaecac46aa1 42a542271101ae2127095e4e01411ddd {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.WGS.Nbc C3L-06537 AML WGS buccal_normal CPT0357570003 CPT0357570003.WholeGenome.RP-2158.bam 53170185799 BAM aligned CPTAC3 c7a19452-d0bd-4113-a350-2aea099c0905 b4f31cf3bffc260ca54eea07e38da87b {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06537.WGS.Nbc.hg38 C3L-06537 AML WGS buccal_normal CPT0357570003 dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wgs_gdc_realn.bam 158430213572 BAM harmonized CPTAC3 64b40dfd-471f-4fa3-bd24-f9ea433e8283 9a56faf5a5941cdb923b4a5cde6d93db {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06537.WGS.Tbm C3L-06537 AML WGS tumor_bone_marrow CPT0357600002 CPT0357600002.WholeGenome.RP-2158.bam 65633893943 BAM aligned CPTAC3 d76bdcd3-0229-439f-823c-68f2d357b111 834b1ede08be9cd4657ff61156742b82 {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.WGS.Tbm.hg38 C3L-06537 AML WGS tumor_bone_marrow CPT0357600002 e3e078d4-2998-4ded-b84e-9f6f734dde64_wgs_gdc_realn.bam 193442780818 BAM harmonized CPTAC3 047b861d-0027-4d8e-94a9-319d18db7b84 bdf3901945217e83f99fc78d3916e346 {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.WXS.Nbc C3L-06537 AML WXS buccal_normal CPT0357570003 CPT0357570003.WholeExome.RP-1303.bam 20522026084 BAM aligned CPTAC3 c30f388f-a058-402a-a2e7-3b41c92bd564 bf6e76026ed7998f399947d7e4d4da5b {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06537.WXS.Nbc.hg38 C3L-06537 AML WXS buccal_normal CPT0357570003 dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wxs_gdc_realn.bam 28360021924 BAM harmonized CPTAC3 0003d0ca-9bcb-4dab-ad58-eb99f626d24f 2f0b4e7003c739fb41e0884241170ed0 {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06537.WXS.Tbm C3L-06537 AML WXS tumor_bone_marrow CPT0357600002 CPT0357600002.WholeExome.RP-1303.bam 20157290364 BAM aligned CPTAC3 420a03fc-b71e-4199-90d9-cbd3a7ea598f d3f97bac054e7147c3690e6a96e2d38e {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06537.WXS.Tbm.hg38 C3L-06537 AML WXS tumor_bone_marrow CPT0357600002 e3e078d4-2998-4ded-b84e-9f6f734dde64_wxs_gdc_realn.bam 27641043839 BAM harmonized CPTAC3 2938b8d2-b043-43cb-a92b-06cb22cdc57c ebea9d39cb106ce2b5661569fdeddfaf {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.MethArray.Green.Tbm C3L-06538 AML Methylation_Array tumor_bone_marrow CPT0357740002 205555380130_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4a78766c-42fe-4614-8c61-5a69665117b2 a87a73d76a5a577012d851d81bd0dc98 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.MethArray.Red.Tbm C3L-06538 AML Methylation_Array tumor_bone_marrow CPT0357740002 205555380130_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 f1e6878f-0156-488a-881f-27e32879156a 84e8f5d0ae7aab7976938e3274644c59 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.miRNA-Seq.S52_L008_R1.Tbm C3L-06538 AML miRNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC31-K00269_0297_AHKCFKBBXY_GACGAC_S52_L008_R1_001.unaln.bam 181417181 BAM S52_L008_R1 unaligned CPTAC3 2011bc05-070a-4543-8d70-4684e9d13cf3 b0c9b2e1c00e2d4fa70b10b1a9f8091d {"aliquot_tag": "ALQ_97e68d06", "sample": "S52", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.miRNA-Seq.Tbm.hg38 C3L-06538 AML miRNA-Seq tumor_bone_marrow CPT0357750002 07543901-ad32-43ab-9a16-3b87b286d262_mirnaseq_gdc_realn.bam 192811006 BAM harmonized CPTAC3 155507e2-bdcf-406b-9371-125f4f9dd331 2c44107fdbfedd999fc104fb28876c52 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.RNA-Seq.chimeric.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.chimeric.gdc_realn.bam 124248716 BAM chimeric harmonized CPTAC3 7f7cbd83-4ade-4bd9-bce6-db3781d2897c 6f4a1a136494ded8c9148cfa19501aa9 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.RNA-Seq.genomic.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.genomic.gdc_realn.bam 8648220570 BAM genomic harmonized CPTAC3 59b21a63-9328-491d-b69b-d372e653712e 8f7f95a3e5e4b285bebc45304b24d424 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.RNA-Seq.S20_L005_R1.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R1_001.fastq.gz 4294397149 FASTQ S20_L005_R1 unaligned CPTAC3 79f72bd1-ecb8-4efb-b830-f14ec5f1360d 33c0b85232c3dac72b74061204856ae2 {"aliquot_tag": "ALQ_97e68d06", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.RNA-Seq.S20_L005_R2.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R2_001.fastq.gz 4723013354 FASTQ S20_L005_R2 unaligned CPTAC3 680eb667-6251-4746-b73d-cebe3c1282f9 b2bf9e3aee9f4b6e9898b1080e98c820 {"aliquot_tag": "ALQ_97e68d06", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.RNA-Seq.transcriptome.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.transcriptome.gdc_realn.bam 10271652180 BAM transcriptome harmonized CPTAC3 0eb97744-49ea-473d-a925-782349f22980 db0bf8385d6dddca89b852e04f348255 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.WGS.Tbm C3L-06538 AML WGS tumor_bone_marrow CPT0357740002 CPT0357740002.WholeGenome.RP-2158.bam 56652968810 BAM aligned CPTAC3 21913514-e444-4369-aafb-095e4635643e a8241492a7b029916da1f29249259aa4 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.WGS.Tbm.hg38 C3L-06538 AML WGS tumor_bone_marrow CPT0357740002 b4e42d84-7c26-4168-a50d-4fc484c2d5b8_wgs_gdc_realn.bam 161085922717 BAM harmonized CPTAC3 019001be-a94d-4d17-b21e-6bb37f28270d 795e09b7974ec2ac93863a8d43be732b {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.WXS.Nbc C3L-06538 AML WXS buccal_normal CPT0357710003 CPT0357710003.WholeExome.RP-1303.bam 29015711918 BAM aligned CPTAC3 71eb4838-3584-4fdb-9e69-68fbb9ce0f58 17bc1014d34c6ee589f72c030f250a19 {"aliquot_tag": "ALQ_15611b50", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06538.WXS.Nbc.hg38 C3L-06538 AML WXS buccal_normal CPT0357710003 68e81fcd-1c9d-4f62-a6ad-9b624865181c_wxs_gdc_realn.bam 39922875366 BAM harmonized CPTAC3 bc427657-d229-491c-9683-14a1a522b955 2bffd4ab07025dee993849e24a3beb4d {"aliquot_tag": "ALQ_15611b50", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06538.WXS.Tbm C3L-06538 AML WXS tumor_bone_marrow CPT0357740002 CPT0357740002.WholeExome.RP-1303.bam 23871267637 BAM aligned CPTAC3 2bcb5508-b0fe-45d5-bf9d-2390572f24f3 158eefbf2eb2028523e6adf9bb6601e4 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06538.WXS.Tbm.hg38 C3L-06538 AML WXS tumor_bone_marrow CPT0357740002 b4e42d84-7c26-4168-a50d-4fc484c2d5b8_wxs_gdc_realn.bam 34029612018 BAM harmonized CPTAC3 8acdf3ea-77e9-446c-9d18-55cbea9f94fc d022ebe143a45c3d2255cb6cee177faa {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.MethArray.Green.Tbm C3L-06539 AML Methylation_Array tumor_bone_marrow CPT0357830002 205555390119_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0c490b67-49ae-4016-b6ae-65a83aa52894 846bc21d160d0384ea8885d89ecfa3a2 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.MethArray.Red.Tbm C3L-06539 AML Methylation_Array tumor_bone_marrow CPT0357830002 205555390119_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 cd221f3e-c494-433d-afa6-94bd9a4465e6 6d85a31487906caf758789f13ab9b7f7 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.miRNA-Seq.S55_L008_R1.Tbm C3L-06539 AML miRNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC31-K00269_0297_AHKCFKBBXY_TAATCG_S55_L008_R1_001.unaln.bam 321978087 BAM S55_L008_R1 unaligned CPTAC3 f26b1f46-c7e1-458a-b0a7-a36277549c81 683fdf7f75270927957b945ba284975f {"aliquot_tag": "ALQ_5bd01663", "sample": "S55", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.miRNA-Seq.Tbm.hg38 C3L-06539 AML miRNA-Seq tumor_bone_marrow CPT0357840002 3a4a5c39-8e58-4e83-b7da-c9c91598b690_mirnaseq_gdc_realn.bam 336183832 BAM harmonized CPTAC3 307c03fc-a418-416a-9c57-459b75b15c66 244c75857d2957fd94b58793b0cfa669 {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.RNA-Seq.chimeric.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.chimeric.gdc_realn.bam 108920325 BAM chimeric harmonized CPTAC3 424c8221-c5ed-4e68-a958-88460147dfd2 0b49f4e8b45d72aaf2bb4675b9ecc07e {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.RNA-Seq.genomic.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.genomic.gdc_realn.bam 8259301597 BAM genomic harmonized CPTAC3 28dd782b-f300-47ba-998e-bf798a37f289 682e2efc23c9099b427e042bbfa7c434 {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.RNA-Seq.S18_L005_R1.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R1_001.fastq.gz 4124506299 FASTQ S18_L005_R1 unaligned CPTAC3 3dad273f-fe63-445a-b5d4-68775e31b1ad af044fba3e425eb795551e3278d68bc1 {"aliquot_tag": "ALQ_5bd01663", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.RNA-Seq.S18_L005_R2.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R2_001.fastq.gz 4580821309 FASTQ S18_L005_R2 unaligned CPTAC3 d7eb624c-5723-4c25-8228-f7cd7a9423c9 df3a764db0ee062fb9a91cbeadcce072 {"aliquot_tag": "ALQ_5bd01663", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.RNA-Seq.transcriptome.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.transcriptome.gdc_realn.bam 14636869814 BAM transcriptome harmonized CPTAC3 e43e5050-8965-4989-8bd3-9f183e94cd24 041afd1a53c30cfcdf152ee514c93f93 {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.WGS.Nbc C3L-06539 AML WGS buccal_normal CPT0357800003 CPT0357800003.WholeGenome.RP-2158.bam 50605679650 BAM aligned CPTAC3 77136785-4819-4027-b1f8-90dd54a5a823 ee223a60c6138f0f4ff3cc0f1fee9c5a {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06539.WGS.Nbc.hg38 C3L-06539 AML WGS buccal_normal CPT0357800003 e0e01c9d-f823-409e-b875-2d75dc1a577a_wgs_gdc_realn.bam 154159485616 BAM harmonized CPTAC3 472f4c29-feee-4101-9f40-24a10a33bcc3 d0619dab45d78164ab2aae0f242fea1d {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06539.WGS.Tbm C3L-06539 AML WGS tumor_bone_marrow CPT0357830002 CPT0357830002.WholeGenome.RP-2158.bam 59648893962 BAM aligned CPTAC3 a4210eb4-62bf-4be4-8d98-ca58ad0553bf 09be0ade4bfbd00be204fd5bca98b74a {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.WGS.Tbm.hg38 C3L-06539 AML WGS tumor_bone_marrow CPT0357830002 c9f7d842-f01a-4b20-918a-85ca0baa9b60_wgs_gdc_realn.bam 176935203531 BAM harmonized CPTAC3 eb708ee8-4b29-4e9c-b714-fe5c077a60e7 17249f18fe843074d11ed64ebb2d7620 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.WXS.Nbc C3L-06539 AML WXS buccal_normal CPT0357800003 CPT0357800003.WholeExome.RP-1303.bam 27872661700 BAM aligned CPTAC3 20a69353-7124-4b35-b0f7-d29126f520e5 7153e8cc8c5d0f03f188892552a2ddba {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06539.WXS.Nbc.hg38 C3L-06539 AML WXS buccal_normal CPT0357800003 e0e01c9d-f823-409e-b875-2d75dc1a577a_wxs_gdc_realn.bam 38284612628 BAM harmonized CPTAC3 233aa0b4-a8bc-4fce-9747-82c617215b27 c71529c7286a8e1c7dd0c78f3b091415 {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06539.WXS.Tbm C3L-06539 AML WXS tumor_bone_marrow CPT0357830002 CPT0357830002.WholeExome.RP-1303.bam 21263665121 BAM aligned CPTAC3 24a320a7-9fef-47e4-9082-c35d5751fa06 5f220383f4d114916e0045232c1a98c3 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06539.WXS.Tbm.hg38 C3L-06539 AML WXS tumor_bone_marrow CPT0357830002 c9f7d842-f01a-4b20-918a-85ca0baa9b60_wxs_gdc_realn.bam 29737850465 BAM harmonized CPTAC3 a9f44528-f082-421c-a615-9a5c558d6c69 6f8993b3602c3488de323c5464470161 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.MethArray.Green.Tbm C3L-06540 AML Methylation_Array tumor_bone_marrow CPT0357910002 205555380155_R03C01_Grn.idat 13677956 IDAT Green NA CPTAC3 da73ccad-3cb9-470b-adaf-31e76c0e11b2 e94b1c7fc0233fb9be5c85b3daf648ad {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.MethArray.Red.Tbm C3L-06540 AML Methylation_Array tumor_bone_marrow CPT0357910002 205555380155_R03C01_Red.idat 13677956 IDAT Red NA CPTAC3 74c866c7-235d-4bb6-9ccd-0a8edfbb7b27 58127a4fb9b7c62904187c87f1cbf68f {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.miRNA-Seq.S26_L007_R1.Tbm C3L-06540 AML miRNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC31-K00269_0297_AHKCFKBBXY_TACAGC_S26_L007_R1_001.unaln.bam 311359715 BAM S26_L007_R1 unaligned CPTAC3 76a11898-8762-4bd1-bb3c-29a62e136a50 c94a7e567b34901cd47f653f7bcd1a24 {"aliquot_tag": "ALQ_1fcc3066", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.miRNA-Seq.Tbm.hg38 C3L-06540 AML miRNA-Seq tumor_bone_marrow CPT0357920002 85dc60e9-b46d-4ecb-a2e3-62235ff48021_mirnaseq_gdc_realn.bam 327276933 BAM harmonized CPTAC3 ad084fa7-052b-4ee3-971c-c970c3cdcc86 962c8018e2f0323d85b55c31a39d4cfa {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.RNA-Seq.chimeric.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.chimeric.gdc_realn.bam 53026256 BAM chimeric harmonized CPTAC3 ed0bd558-3119-42a9-95ac-bcd2dc329756 7689302ffa432146941e26ecec0aeca5 {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.RNA-Seq.genomic.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.genomic.gdc_realn.bam 7702628816 BAM genomic harmonized CPTAC3 51297306-22f3-420c-990b-847b0faba61d ca6331f2ae918178cb0e212c2f81fa05 {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.RNA-Seq.S19_L005_R1.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R1_001.fastq.gz 3899033724 FASTQ S19_L005_R1 unaligned CPTAC3 e3dca2c2-f50b-4088-924c-d1006c1c1bc4 4e28c7fe2fd9efc9b005ed4001e041de {"aliquot_tag": "ALQ_1fcc3066", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.RNA-Seq.S19_L005_R2.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R2_001.fastq.gz 4235744355 FASTQ S19_L005_R2 unaligned CPTAC3 240d81cf-3707-4eac-b01e-c66dd53b52dc a4599bb9f99f778b7bb026d276405c74 {"aliquot_tag": "ALQ_1fcc3066", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.RNA-Seq.transcriptome.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.transcriptome.gdc_realn.bam 11265263511 BAM transcriptome harmonized CPTAC3 7064de39-d656-46b8-ae76-787462e25709 aec9ff5d6e390d5bc7aab45e4bed1eb6 {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.WGS.Nbc C3L-06540 AML WGS buccal_normal CPT0357880003 CPT0357880003.WholeGenome.RP-2158.bam 63113829657 BAM aligned CPTAC3 a3960b51-54b0-4daf-94d6-f22ecbda6535 ee3ef7154576bb16abc85f69e875a446 {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06540.WGS.Nbc.hg38 C3L-06540 AML WGS buccal_normal CPT0357880003 09b7b818-7c8d-41db-b8a2-1b1713603adc_wgs_gdc_realn.bam 185987353424 BAM harmonized CPTAC3 14818528-82a8-4d2c-bf3f-b4eafb4e3c5c 3fbdf9c0b76186a68940752229e7851f {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06540.WGS.Tbm C3L-06540 AML WGS tumor_bone_marrow CPT0357910002 CPT0357910002.WholeGenome.RP-2158.bam 59101287043 BAM aligned CPTAC3 058b59e4-e2b9-4167-924e-ed4f5c8be657 288c9eeed554ab224cbb01b0a529c1b3 {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.WGS.Tbm.hg38 C3L-06540 AML WGS tumor_bone_marrow CPT0357910002 8398b90d-3648-401d-a664-6a9c44fca60b_wgs_gdc_realn.bam 174412892546 BAM harmonized CPTAC3 6b58e6f7-133e-46d2-a78b-6d28408c9d3a 0efaea94a271e73e5e5e905fc05f242e {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.WXS.Nbc C3L-06540 AML WXS buccal_normal CPT0357880003 CPT0357880003.WholeExome.RP-1303.bam 21607827917 BAM aligned CPTAC3 faf626de-a4c3-4ca8-b557-5dda9012609c 2f5d0c4ec96313920fbb598e77d0d29b {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06540.WXS.Nbc.hg38 C3L-06540 AML WXS buccal_normal CPT0357880003 09b7b818-7c8d-41db-b8a2-1b1713603adc_wxs_gdc_realn.bam 30002321666 BAM harmonized CPTAC3 7df2ff58-1123-4d05-99b0-93f8348bc66b 2b8cac1776631f253a0f4245e5ce27a6 {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06540.WXS.Tbm C3L-06540 AML WXS tumor_bone_marrow CPT0357910002 CPT0357910002.WholeExome.RP-1303.bam 20816620315 BAM aligned CPTAC3 169af22a-4478-43ec-b79b-867a5dfcbaf7 2bb1974f0ad32d8fb6de54dcd91efad0 {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06540.WXS.Tbm.hg38 C3L-06540 AML WXS tumor_bone_marrow CPT0357910002 8398b90d-3648-401d-a664-6a9c44fca60b_wxs_gdc_realn.bam 28716271335 BAM harmonized CPTAC3 c28a8145-36cf-4211-9eec-fcfbac21dcc1 56ca93def48d0d3f17e7702ebb757bab {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.MethArray.Green.Tbm C3L-06541 AML Methylation_Array tumor_bone_marrow CPT0358050001 204930640111_R04C01_Grn.idat 13677958 IDAT Green NA CPTAC3 3813b0da-228b-492a-ac51-bc5e93f09240 6d324693c977b10987dd42a0213c5c08 {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.MethArray.Red.Tbm C3L-06541 AML Methylation_Array tumor_bone_marrow CPT0358050001 204930640111_R04C01_Red.idat 13677958 IDAT Red NA CPTAC3 43a551f1-99f7-4415-a944-bac1c9deedde 50eaf593185936331f3e39d12c6e69b6 {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.miRNA-Seq.S20_L001_R1.Tbm C3L-06541 AML miRNA-Seq tumor_bone_marrow CPT0358060002 210702_UNC32-K00270_0289_AHKJ22BBXY_TGACCA_S20_L001_R1_001.unaln.bam 243155209 BAM S20_L001_R1 unaligned CPTAC3 26f9f7b4-ab6d-4a0c-b8f5-24daaa06a1a1 09b54a3f1094293a61c7150b2af5cc12 {"aliquot_tag": "ALQ_3b0bb787", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.miRNA-Seq.Tbm.hg38 C3L-06541 AML miRNA-Seq tumor_bone_marrow CPT0358060002 971c224d-b392-40f9-bd5e-e36b6a82c440_mirnaseq_gdc_realn.bam 264943276 BAM harmonized CPTAC3 625f22db-bb65-42dd-b39a-c13bfa9f21f4 a7c5462ec88f46273dbbf12fb7c225b2 {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.RNA-Seq.chimeric.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.chimeric.gdc_realn.bam 50165203 BAM chimeric harmonized CPTAC3 5dff3a60-1507-4038-8e36-f333afcc4790 da27752e7d9d6d44509008970eeaed5c {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.RNA-Seq.genomic.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.genomic.gdc_realn.bam 8047262491 BAM genomic harmonized CPTAC3 169081e7-bf5a-421d-beb5-df4dc4fd8ea6 543199fefa00fba566aa9b8531eaf3bc {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.RNA-Seq.S64_L008_R1.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R1_001.fastq.gz 3742877243 FASTQ S64_L008_R1 unaligned CPTAC3 59d3d48b-d378-408b-9065-b5140f3209e5 fbc7e9e3ee70d34db4a9caa1a2a8d5e0 {"aliquot_tag": "ALQ_3b0bb787", "sample": "S64", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.RNA-Seq.S64_L008_R2.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R2_001.fastq.gz 4397325711 FASTQ S64_L008_R2 unaligned CPTAC3 5636c15e-e465-415d-ad12-6e6240adb9e0 8e41d5eafa56dc21b0e7d2c53437037a {"aliquot_tag": "ALQ_3b0bb787", "sample": "S64", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.RNA-Seq.transcriptome.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.transcriptome.gdc_realn.bam 8457774850 BAM transcriptome harmonized CPTAC3 251c1b12-2621-4ba3-8f85-1d1278fca162 9078f7b04af58fde5d36a3a5fd0c5834 {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.WGS.Nbc C3L-06541 AML WGS buccal_normal CPT0358030001 CPT0358030001.WholeGenome.RP-2158.bam 48541737139 BAM aligned CPTAC3 2d0020b5-e323-4dd9-882d-5ba6379cdeb5 73c18710e063db2228ad3b35398c89fc {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06541.WGS.Nbc.hg38 C3L-06541 AML WGS buccal_normal CPT0358030001 75b3a564-3ce9-482a-8cd6-034484dd5465_wgs_gdc_realn.bam 150355441830 BAM harmonized CPTAC3 353c9734-73ad-4bed-86b7-524c2d79a4b5 184dcf20f6213ddf61da194d8ccbd105 {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06541.WGS.Tbm C3L-06541 AML WGS tumor_bone_marrow CPT0358050001 CPT0358050001.WholeGenome.RP-2158.bam 61518904025 BAM aligned CPTAC3 12f1cfe0-f0c3-4c54-8edd-bb44328c2609 430041d5f31b4b50385d70956be057a1 {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.WGS.Tbm.hg38 C3L-06541 AML WGS tumor_bone_marrow CPT0358050001 0356d6af-f2ae-47df-a012-ac06b249fbae_wgs_gdc_realn.bam 110319964037 BAM harmonized CPTAC3 0d821410-5bac-4cc3-acbe-95fcda1364ea f4997590635920f3c1363e5ad007c99a {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.WXS.Nbc C3L-06541 AML WXS buccal_normal CPT0358030001 CPT0358030001.WholeExome.RP-1303.bam 17435113533 BAM aligned CPTAC3 bf7fe806-cb3d-41f6-a396-57cb824ec7c3 ad9530e68b8518d370d5ee4ef1b1ca55 {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06541.WXS.Nbc.hg38 C3L-06541 AML WXS buccal_normal CPT0358030001 75b3a564-3ce9-482a-8cd6-034484dd5465_wxs_gdc_realn.bam 24375964003 BAM harmonized CPTAC3 db057121-e94c-4c5c-8c74-c9a5aff26b13 0a72ee084c01ae28bbe66c3f67354f0f {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06541.WXS.Tbm C3L-06541 AML WXS tumor_bone_marrow CPT0358050001 CPT0358050001.WholeExome.RP-1303.bam 32199715186 BAM aligned CPTAC3 a19496ef-9892-43b2-bdbc-9ef3858742d2 d3821e0a39e3f30498cdbc78ca8d09dc {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06541.WXS.Tbm.hg38 C3L-06541 AML WXS tumor_bone_marrow CPT0358050001 0356d6af-f2ae-47df-a012-ac06b249fbae_wxs_gdc_realn.bam 43859816354 BAM harmonized CPTAC3 41fa4fe8-db99-499d-958d-1f8ab3d17427 995484a870887d8cf45ddd47e5c7ad0c {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.MethArray.Green.Tbm C3L-06542 AML Methylation_Array tumor_bone_marrow CPT0358190002 205555380136_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 df50b7a1-e440-428f-8061-0f57b559f295 cb9ae96ef81d3c03b2f45c38ce39ecdf {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.MethArray.Red.Tbm C3L-06542 AML Methylation_Array tumor_bone_marrow CPT0358190002 205555380136_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 2bfa8168-58a9-4ece-aad7-a50c2ed02447 e6c7820a85a4d63fdb6bed142efb233b {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.miRNA-Seq.S28_L007_R1.Tbm C3L-06542 AML miRNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC31-K00269_0297_AHKCFKBBXY_TATAAT_S28_L007_R1_001.unaln.bam 318543067 BAM S28_L007_R1 unaligned CPTAC3 aa3270a3-05e5-4d18-bdc0-0b386c34315b 2e2ada2b0639524ddef33640f109db45 {"aliquot_tag": "ALQ_f983e32c", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.miRNA-Seq.Tbm.hg38 C3L-06542 AML miRNA-Seq tumor_bone_marrow CPT0358200002 e5c854e8-6602-40b3-9d97-695c8d9ce7be_mirnaseq_gdc_realn.bam 336980603 BAM harmonized CPTAC3 708395af-3bcb-4730-8632-0f0d177ae47d 3d37b2a7ca293bb586c7f9cccf51fcf6 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.RNA-Seq.chimeric.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.chimeric.gdc_realn.bam 138974763 BAM chimeric harmonized CPTAC3 db048e41-7260-4451-8136-6423a4ecc2d4 3dfb5deed56976866dc8bda5e97c2589 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.RNA-Seq.genomic.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.genomic.gdc_realn.bam 7645693601 BAM genomic harmonized CPTAC3 56c150c2-4022-4ee9-bf16-5031e0ffec55 27b4db52611264165c99e935687adf45 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.RNA-Seq.S17_L005_R1.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R1_001.fastq.gz 3878804047 FASTQ S17_L005_R1 unaligned CPTAC3 cc62b62f-c0a1-4ebb-bc4a-d2725f1fe8c6 099b7e29dc73bd171cfe0bef08472ede {"aliquot_tag": "ALQ_f983e32c", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.RNA-Seq.S17_L005_R2.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R2_001.fastq.gz 4225174935 FASTQ S17_L005_R2 unaligned CPTAC3 e1b044d8-b032-4630-9797-923d831a9915 5e97d4584614cd93688f75e41bf06e35 {"aliquot_tag": "ALQ_f983e32c", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.RNA-Seq.transcriptome.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.transcriptome.gdc_realn.bam 11163186198 BAM transcriptome harmonized CPTAC3 9ef0e1b2-f521-4fbb-9fe5-88f336c1751b b8b5706105ef333d15f27068c4b428c7 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.WGS.Nbc C3L-06542 AML WGS buccal_normal CPT0358160002 CPT0358160002.WholeGenome.RP-2158.bam 42404269304 BAM aligned CPTAC3 7d5b0c61-cd58-4573-af63-d1d855ab6d2b 770675054789f9d469ee7940886a0cd2 {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06542.WGS.Nbc.hg38 C3L-06542 AML WGS buccal_normal CPT0358160002 1a261104-79db-4f51-8a77-42fe4a12dab2_wgs_gdc_realn.bam 125870394775 BAM harmonized CPTAC3 1835d614-9a70-471e-8179-c103234cb687 70b6cba134aecde7dae721a8b62355fc {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06542.WGS.Tbm C3L-06542 AML WGS tumor_bone_marrow CPT0358190002 CPT0358190002.WholeGenome.RP-2158.bam 53610009979 BAM aligned CPTAC3 b1e71478-1203-4c23-b27f-69dbafd92170 1f7388d528d22713c48c220504874a86 {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.WGS.Tbm.hg38 C3L-06542 AML WGS tumor_bone_marrow CPT0358190002 6fe2a157-f48e-43fa-806b-4406d5eb94b1_wgs_gdc_realn.bam 153044319610 BAM harmonized CPTAC3 5c5cf68c-fa2b-47ca-968b-88a320d35ac1 71cc653f5d434487442610ec5a95f0ff {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.WXS.Nbc C3L-06542 AML WXS buccal_normal CPT0358160002 CPT0358160002.WholeExome.RP-1303.bam 29178447279 BAM aligned CPTAC3 8f25df5e-6ab8-4cb8-910c-9c491b659886 e21317f911df88a4f2c210f1d8347d3a {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06542.WXS.Nbc.hg38 C3L-06542 AML WXS buccal_normal CPT0358160002 1a261104-79db-4f51-8a77-42fe4a12dab2_wxs_gdc_realn.bam 41801479896 BAM harmonized CPTAC3 f706c920-c9fa-47e7-b963-85d22687e70b a8d511dfa5be8d0c716cf724d260990f {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06542.WXS.Tbm C3L-06542 AML WXS tumor_bone_marrow CPT0358190002 CPT0358190002.WholeExome.RP-1303.bam 21492300088 BAM aligned CPTAC3 b8c89fcb-8db1-4310-8086-d233e51bfc8e b832419abb7fd53f3271219976eb679c {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06542.WXS.Tbm.hg38 C3L-06542 AML WXS tumor_bone_marrow CPT0358190002 6fe2a157-f48e-43fa-806b-4406d5eb94b1_wxs_gdc_realn.bam 29783624416 BAM harmonized CPTAC3 b49db584-c2d9-49ac-9738-9c22259e7629 85ca6a1c224b1e9f9e9a8372aae3b6aa {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.MethArray.Green.Tbm C3L-06543 AML Methylation_Array tumor_bone_marrow CPT0358290002 204930640111_R01C01_Grn.idat 13677961 IDAT Green NA CPTAC3 70858a96-b11d-40d3-8db1-8bf077e53e85 64f4261cfea3493ff26bb2771cdc1aef {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.MethArray.Red.Tbm C3L-06543 AML Methylation_Array tumor_bone_marrow CPT0358290002 204930640111_R01C01_Red.idat 13677961 IDAT Red NA CPTAC3 c035b53a-c69c-470a-a8ed-57e6666a3a72 4dbbe6002d986ec393d9c44177b94c4b {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.miRNA-Seq.S27_L007_R1.Tbm C3L-06543 AML miRNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC31-K00269_0297_AHKCFKBBXY_TAGCTT_S27_L007_R1_001.unaln.bam 288903547 BAM S27_L007_R1 unaligned CPTAC3 debca573-607d-463c-b56b-0cc0c3f32ffe 19bb902d3da74eac7f9267a03f550f21 {"aliquot_tag": "ALQ_32df3089", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.miRNA-Seq.Tbm.hg38 C3L-06543 AML miRNA-Seq tumor_bone_marrow CPT0358300002 f102b17c-7746-4c1e-bf39-b513c0f152ba_mirnaseq_gdc_realn.bam 300570662 BAM harmonized CPTAC3 9ad0a819-88e5-429a-a547-2c6b420df5be 42903a3e8cb4966dce38ee43768dc7a6 {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.RNA-Seq.chimeric.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.chimeric.gdc_realn.bam 90443077 BAM chimeric harmonized CPTAC3 98389374-1051-4cc4-bda4-9c556d8c19e8 27200ff14466003c509fac646654514a {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.RNA-Seq.genomic.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.genomic.gdc_realn.bam 8306566715 BAM genomic harmonized CPTAC3 549c5e69-8f7b-479e-bd74-68026c65440b f8f10c606e72d1203e424bd754158366 {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.RNA-Seq.S3_L001_R1.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R1_001.fastq.gz 4115245559 FASTQ S3_L001_R1 unaligned CPTAC3 77523715-551e-4c3b-901b-3fd1c151fe92 d3fb702609844f415383181e441282ef {"aliquot_tag": "ALQ_32df3089", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.RNA-Seq.S3_L001_R2.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R2_001.fastq.gz 4570631944 FASTQ S3_L001_R2 unaligned CPTAC3 8d808288-6ab7-42a6-9a1a-1d822136964b 589159ba7006e64722960a7f7cace8f2 {"aliquot_tag": "ALQ_32df3089", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.RNA-Seq.transcriptome.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.transcriptome.gdc_realn.bam 9249356567 BAM transcriptome harmonized CPTAC3 0d484508-fc46-47f3-b1da-573276682b43 453f62b2e2d17c3226fb3d7eb26b56fd {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.WGS.Nbc C3L-06543 AML WGS buccal_normal CPT0358260003 CPT0358260003.WholeGenome.RP-2158.bam 54966870388 BAM aligned CPTAC3 9e825789-7131-49b5-a378-cf157eee0ef5 d73aca2e8e6ead00e974f153d7343fbd {"aliquot_tag": "ALQ_1c4261a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06543.WGS.Nbc.hg38 C3L-06543 AML WGS buccal_normal CPT0358260003 e362e60c-2f7f-4aa9-8c80-7a72291d4f23_wgs_gdc_realn.bam 168766002144 BAM harmonized CPTAC3 10a4b333-5ffd-439e-a55a-aa95ac06b469 994bd5085cc9a84f3ba6aa059416ab3f {"aliquot_tag": "ALQ_1c4261a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06543.WGS.Tbm C3L-06543 AML WGS tumor_bone_marrow CPT0358290002 CPT0358290002.WholeGenome.RP-2158.bam 47954298822 BAM aligned CPTAC3 81a839c8-4541-4610-b633-7a1c5f3bc8bc b22b330125cc966d6e506c695d1e474c {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.WGS.Tbm.hg38 C3L-06543 AML WGS tumor_bone_marrow CPT0358290002 61f12148-dc2c-46c5-8be4-5c8b16ed62c6_wgs_gdc_realn.bam 141040966682 BAM harmonized CPTAC3 640af29c-4df0-4694-99a3-63b0820bf958 4782f13731c26f34b6358d07479e5d99 {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.WXS.Tbm C3L-06543 AML WXS tumor_bone_marrow CPT0358290002 CPT0358290002.WholeExome.RP-1303.bam 22528729323 BAM aligned CPTAC3 452b6f92-bd54-4040-9900-084a810db284 d59aced98cd0b4b9591ee546ea647870 {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06543.WXS.Tbm.hg38 C3L-06543 AML WXS tumor_bone_marrow CPT0358290002 61f12148-dc2c-46c5-8be4-5c8b16ed62c6_wxs_gdc_realn.bam 31717482877 BAM harmonized CPTAC3 2ae62a9d-2a2e-4c17-aa44-d040ec0dba74 b381684a15ec5cc664f2de87b426de3d {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06625.MethArray.Green.T C3L-06625 GBM Methylation_Array tumor CPT0406420007 205555390164_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9a577263-5e14-4507-b83a-2361bb583c50 8cd40b7a810af222d0774df87b902406 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor"} -C3L-06625.MethArray.Red.T C3L-06625 GBM Methylation_Array tumor CPT0406420007 205555390164_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 cd82719a-5b88-4984-bb4d-b4a15eda1297 3b42f9614cff6fd83890b260fa3d8936 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor"} -C3L-06625.miRNA-Seq.S33_L005_R1.T C3L-06625 GBM miRNA-Seq tumor CPT0406420010 210702_UNC32-K00270_0289_AHKJ22BBXY_GACGAC_S33_L005_R1_001.unaln.bam 293196759 BAM S33_L005_R1 unaligned CPTAC3 c987ae75-c80b-44e2-be21-841ecc36a725 59ac47e92a05991cd3fa2d28e160ade0 {"aliquot_tag": "ALQ_deb11bcc", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-06625.miRNA-Seq.T.hg38 C3L-06625 GBM miRNA-Seq tumor CPT0406420010 6beb2dbc-b5af-4854-815c-36074e5ba4e2_mirnaseq_gdc_realn.bam 319131648 BAM harmonized CPTAC3 bae228f9-a4f6-4720-9b17-5662911b4bce 9276790072afaf454fe0186a986980be {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor"} -C3L-06625.RNA-Seq.chimeric.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.chimeric.gdc_realn.bam 144027014 BAM chimeric harmonized CPTAC3 571e910a-9ee6-4deb-8668-5f7109842a34 b9b65e48f8abe6365c79ff50eb4f471e {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor"} -C3L-06625.RNA-Seq.genomic.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.genomic.gdc_realn.bam 7627098861 BAM genomic harmonized CPTAC3 a26b57c7-8834-4051-86c1-b329c6dbe2fd a15c29fd62fa0555c8606f42891dfa48 {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor"} -C3L-06625.RNA-Seq.S17_L005_R1.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R1_001.fastq.gz 3568996815 FASTQ S17_L005_R1 unaligned CPTAC3 54aee35f-9cd2-4a3b-9c49-dbffe0677d13 c51f006e65c14b137854421041313d09 {"aliquot_tag": "ALQ_deb11bcc", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-06625.RNA-Seq.S17_L005_R2.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R2_001.fastq.gz 3833373967 FASTQ S17_L005_R2 unaligned CPTAC3 4a16d6ea-281b-440a-9157-095d8785f68a e009c6a419524840cd8ae608c526bef1 {"aliquot_tag": "ALQ_deb11bcc", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-06625.RNA-Seq.transcriptome.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.transcriptome.gdc_realn.bam 9445547831 BAM transcriptome harmonized CPTAC3 c6162faa-f678-452c-8c3d-3df865881747 a17a6643e4e5f6d879691fe91e019fa0 {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor"} -C3L-06625.WGS.N C3L-06625 GBM WGS blood_normal CPT0405340002 CPT0405340002.WholeGenome.RP-2158.bam 24402990127 BAM aligned CPTAC3 8557dfec-f07f-4653-8321-b7f07f2346f1 04f2c4f563eea3fd8da2cb0c810228ac {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal"} -C3L-06625.WGS.N.hg38 C3L-06625 GBM WGS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wgs_gdc_realn.bam 70804556920 BAM harmonized CPTAC3 9d21e404-4a48-4eb3-8bee-66b811efd37e 99f877e5b2b4b0bcb770b74738d93964 {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal"} -C3L-06625.WGS.T C3L-06625 GBM WGS tumor CPT0406420007 CPT0406420007.WholeGenome.RP-2158.bam 26826605690 BAM aligned CPTAC3 eddaab40-a3b4-4285-bef3-e8bc7061f1eb 425f3a4256948608fc7532a6e41f74ec {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor"} -C3L-06625.WGS.T.hg38 C3L-06625 GBM WGS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wgs_gdc_realn.bam 77162667169 BAM harmonized CPTAC3 a7bd7fab-ba0d-43e2-9c92-ebbfb5d94cca e6114d394b6c4fdd8ae51e91348da081 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor"} -C3L-06625.WXS.N C3L-06625 GBM WXS blood_normal CPT0405340002 CPT0405340002.WholeExome.RP-1303.bam 26868199263 BAM aligned CPTAC3 dff80e81-9356-4055-8da6-f47c2c50c4b0 9307746a7c251f14b30c12f324eed9f0 {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal"} -C3L-06625.WXS.N.hg38 C3L-06625 GBM WXS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wxs_gdc_realn.bam 37479287643 BAM harmonized CPTAC3 12c76c83-4c16-4016-8594-e04207caf5e5 4cb124ebccd8b6f4e4db576091fefcf1 {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal"} -C3L-06625.WXS.T C3L-06625 GBM WXS tumor CPT0406420007 CPT0406420007.WholeExome.RP-1303.bam 23679098646 BAM aligned CPTAC3 890457f0-bee4-4471-aab4-2343d2d208a9 6f3a7ebac22acfdd7c23ac434b160fe9 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor"} -C3L-06625.WXS.T.hg38 C3L-06625 GBM WXS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wxs_gdc_realn.bam 32707416253 BAM harmonized CPTAC3 926f6d61-0f53-4923-96cf-73626b0e0fe7 18ec221717fef1fa4068eefa8a88413f {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor"} -C3L-06801.MethArray.Green.Tbm C3L-06801 AML Methylation_Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Grn.idat 13677888 IDAT Green NA CPTAC3 12a60d2f-182b-4cbd-93bf-75957731562a 130c1c5738449f2c5c03e6d1d4349647 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.MethArray.Red.Tbm C3L-06801 AML Methylation_Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Red.idat 13677888 IDAT Red NA CPTAC3 3b21f869-af3f-4fcf-ba4e-e44ef358a88b 8ade34335c6249cbec15f3c10c04e546 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.miRNA-Seq.S30_L002_R1.Tbm C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCGTCC_S30_L002_R1_001.unaln.bam 197434802 BAM S30_L002_R1 unaligned CPTAC3 8a58be63-7a82-467d-8cc6-e2de62e31624 e1c278ecf3f8ee47fe0402f11a27e0d7 {"aliquot_tag": "ALQ_abfca663", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.miRNA-Seq.Tbm.hg38 C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 e71c465e-d8a0-4105-8219-197d77e36f26_mirnaseq_gdc_realn.bam 210256688 BAM harmonized CPTAC3 49def5b0-323f-4af6-9f9a-2b4870addb0f db259b637889b27b00ba1779bcd3c76d {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.RNA-Seq.chimeric.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.chimeric.gdc_realn.bam 465233189 BAM chimeric harmonized CPTAC3 ab1b1c9d-bb0c-420c-8044-372fca6f0deb b6e41293c40ce42995fc21f3fa881fad {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.RNA-Seq.genomic.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.genomic.gdc_realn.bam 7113549492 BAM genomic harmonized CPTAC3 9acc8253-7856-45ec-b0d0-4f159ff28268 9ab9878e3384043a72fc1949bdb15fe0 {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.RNA-Seq.S10_L003_R1.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3398816777 FASTQ S10_L003_R1 unaligned CPTAC3 6c26ae3d-a9de-4c8b-aa18-8cfcb7f7e7fe ac4d508b55f026542caac3a16f8c1b94 {"aliquot_tag": "ALQ_abfca663", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.RNA-Seq.S10_L003_R2.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3657202227 FASTQ S10_L003_R2 unaligned CPTAC3 f66374e3-8299-4707-a67b-3430583f0cf9 ac0b368dba1620170799fe40d7bb36b3 {"aliquot_tag": "ALQ_abfca663", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.RNA-Seq.transcriptome.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.transcriptome.gdc_realn.bam 8385537155 BAM transcriptome harmonized CPTAC3 fc3973a3-883c-4f77-a563-6f8d9b73ab2a c7414e1cfe02145f32069111f8f0baf8 {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.WGS.Nbc C3L-06801 AML WGS buccal_normal CPT0423360001 CPT0423360001.WholeGenome.RP-2158.bam 58187396478 BAM aligned CPTAC3 3d14d691-83dd-41b4-b9ce-5986cf29eb7b 849a0e8d3835e782a513faa51b72d290 {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06801.WGS.Nbc.hg38 C3L-06801 AML WGS buccal_normal CPT0423360001 509bac37-703e-4caf-b54e-1e4ed723f5b9_wgs_gdc_realn.bam 175494235031 BAM harmonized CPTAC3 527e15dd-11c6-455b-bf87-8b24bc28b6e1 e248adc830acdf0281593fd16ba4fe26 {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06801.WGS.Tbm C3L-06801 AML WGS tumor_bone_marrow CPT0423330002 CPT0423330002.WholeGenome.RP-2158.bam 50931849564 BAM aligned CPTAC3 fe5cd2cc-5572-438b-ab12-51d013f9ee7d fe98378c2474f6954e36dd70b7cee74e {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.WGS.Tbm.hg38 C3L-06801 AML WGS tumor_bone_marrow CPT0423330002 0777b76c-fbf2-406f-b010-9a63c2eb65c8_wgs_gdc_realn.bam 151138736406 BAM harmonized CPTAC3 c2325192-7bb3-4f7e-850b-1b1ccb80316b 90d0773bfe99fc272d6518ea1c5cffdd {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.WXS.Nbc C3L-06801 AML WXS buccal_normal CPT0423360001 CPT0423360001.WholeExome.RP-1303.bam 24060526494 BAM aligned CPTAC3 2c07a6fe-0152-42d8-84bb-8a7edc64705d 68f93feaa2d8d76f943d393d75151ff5 {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06801.WXS.Nbc.hg38 C3L-06801 AML WXS buccal_normal CPT0423360001 509bac37-703e-4caf-b54e-1e4ed723f5b9_wxs_gdc_realn.bam 32920465559 BAM harmonized CPTAC3 3f260eb2-a3a2-4167-864a-494392e107ef eb4fb6584e1a904900b4810e158be48f {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06801.WXS.Tbm C3L-06801 AML WXS tumor_bone_marrow CPT0423330002 CPT0423330002.WholeExome.RP-1303.bam 21674632232 BAM aligned CPTAC3 4e7599b9-010e-4e30-981b-3fa9aff70764 c576ee3b6b2c9ca41ccd3a566e2802ba {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06801.WXS.Tbm.hg38 C3L-06801 AML WXS tumor_bone_marrow CPT0423330002 0777b76c-fbf2-406f-b010-9a63c2eb65c8_wxs_gdc_realn.bam 30117583893 BAM harmonized CPTAC3 3d2f7892-de16-4f47-b622-ea20a319caa1 b14ad284d04abeff3ad1d8d2ba8adf23 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.MethArray.Green.Tbm C3L-06803 AML Methylation_Array tumor_bone_marrow CPT0423400002 205705520145_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a234be70-46b6-41f2-b1f4-cc71e2b2ff6e 8e37d5592d45b2364a6245032c181c08 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.MethArray.Red.Tbm C3L-06803 AML Methylation_Array tumor_bone_marrow CPT0423400002 205705520145_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 287a4fff-3ec5-499e-ab02-ce3dd6abb21b afda265e248c5b7e384c6f815a476835 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.miRNA-Seq.S37_L002_R1.Tbm C3L-06803 AML miRNA-Seq tumor_bone_marrow CPT0423410002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTAGAG_S37_L002_R1_001.unaln.bam 222419627 BAM S37_L002_R1 unaligned CPTAC3 21a29c76-0835-4600-a4b8-a9116c2000b2 492ee8f82088f94cde0a643b94226552 {"aliquot_tag": "ALQ_7e1919ab", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.miRNA-Seq.Tbm.hg38 C3L-06803 AML miRNA-Seq tumor_bone_marrow CPT0423410002 10291b60-2855-434d-b023-e18f00a28a57_mirnaseq_gdc_realn.bam 236160865 BAM harmonized CPTAC3 33a7f4bc-40b6-451a-a579-7cd3f02896aa b14fd81aef87e35d1fd630df9f0ba7dd {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.RNA-Seq.chimeric.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.chimeric.gdc_realn.bam 468880897 BAM chimeric harmonized CPTAC3 f035dc81-abe5-4db3-8ef7-c49500caa2a2 de48b8b97535fc0ad46131de797b3760 {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.RNA-Seq.genomic.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.genomic.gdc_realn.bam 7524313192 BAM genomic harmonized CPTAC3 9b5d38df-fe2e-4756-9645-a36ef3e45e95 a42502835cbdbcf0af8b25b37bda3247 {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.RNA-Seq.S9_L003_R1.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 3755558642 FASTQ S9_L003_R1 unaligned CPTAC3 aff4657c-1c93-4991-bf9d-102858d36a82 53653c9b8531eb4d5b9f1adf9118b13f {"aliquot_tag": "ALQ_7e1919ab", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.RNA-Seq.S9_L003_R2.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 3965110182 FASTQ S9_L003_R2 unaligned CPTAC3 696539ea-5c89-4d92-a676-9753068e6958 72eb660fe328b402e0cbc1bc5cb47fcf {"aliquot_tag": "ALQ_7e1919ab", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.RNA-Seq.transcriptome.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.transcriptome.gdc_realn.bam 9929593111 BAM transcriptome harmonized CPTAC3 3a9d4ebd-f70e-40d5-a262-2b5d84b5ebaf a53077ab55f3dddbba1cf24c5841624c {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.WGS.Nbc C3L-06803 AML WGS buccal_normal CPT0423430001 CPT0423430001.WholeGenome.RP-2158.bam 45232516141 BAM aligned CPTAC3 6176d9fe-69f4-4f7a-98ba-da9ccd13dbf4 5a271a4446ecc44cf962988f887e174c {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06803.WGS.Nbc.hg38 C3L-06803 AML WGS buccal_normal CPT0423430001 fb85a170-079b-4546-8d62-d98880d0892a_wgs_gdc_realn.bam 137097285714 BAM harmonized CPTAC3 887b6d76-aeda-4618-b395-4953f9f27201 2cc5c62a6c10b800f5e66e3fb5be3206 {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06803.WGS.Tbm C3L-06803 AML WGS tumor_bone_marrow CPT0423400002 CPT0423400002.WholeGenome.RP-2158.bam 54404756289 BAM aligned CPTAC3 7630eb41-75bf-4708-a031-bf8789837fd3 cf2dc8671b8572cf84e930e0558469b6 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.WGS.Tbm.hg38 C3L-06803 AML WGS tumor_bone_marrow CPT0423400002 ad079273-05c6-4e9e-9c99-c9723ff44b2a_wgs_gdc_realn.bam 161825277408 BAM harmonized CPTAC3 c457f0cc-58e3-4433-b0ac-ffdef5c4a69a cc1c7090606ecac61a089a82210c2209 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.WXS.Nbc C3L-06803 AML WXS buccal_normal CPT0423430001 CPT0423430001.WholeExome.RP-1303.bam 22900150133 BAM aligned CPTAC3 78723427-74a2-41c7-a60e-8af263efb903 5728d5db8d6086b85ef912a6f1c2796e {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06803.WXS.Nbc.hg38 C3L-06803 AML WXS buccal_normal CPT0423430001 fb85a170-079b-4546-8d62-d98880d0892a_wxs_gdc_realn.bam 31737986860 BAM harmonized CPTAC3 5f66e2ee-16bc-449e-af44-0d580e957a50 86aa31b2458f357e3e3c4d873bfbe3dc {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06803.WXS.Tbm C3L-06803 AML WXS tumor_bone_marrow CPT0423400002 CPT0423400002.WholeExome.RP-1303.bam 26183254766 BAM aligned CPTAC3 9535af0b-cec0-4d06-93ba-a8b36985b1b0 60489518be798f1e242ec0a2ea3a9501 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06803.WXS.Tbm.hg38 C3L-06803 AML WXS tumor_bone_marrow CPT0423400002 ad079273-05c6-4e9e-9c99-c9723ff44b2a_wxs_gdc_realn.bam 36395937526 BAM harmonized CPTAC3 a1e83679-d777-4421-af92-2bc1cf9ae681 a84900ac9c64b0c55820dd776b3ac3cc {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.MethArray.Green.Tbm C3L-06806 AML Methylation_Array tumor_bone_marrow CPT0394990002 205555390176_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fde29f11-1de4-495c-93da-ae2dcb4bcb75 3b4643ac91b379f7a1561e553a2fcf5d {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.MethArray.Red.Tbm C3L-06806 AML Methylation_Array tumor_bone_marrow CPT0394990002 205555390176_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 51937697-5728-4e37-98f7-15d1401c29ec 6f1a51e7a2c0b32fd9e4a5ca86426809 {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.miRNA-Seq.S25_L007_R1.Tbm C3L-06806 AML miRNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC31-K00269_0297_AHKCFKBBXY_GGCTAC_S25_L007_R1_001.unaln.bam 276008939 BAM S25_L007_R1 unaligned CPTAC3 51ed8f1f-3941-41da-b6ab-073753a7006f 65aab5a3dc1233d5e8985bb0895dd7eb {"aliquot_tag": "ALQ_823336a8", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.miRNA-Seq.Tbm.hg38 C3L-06806 AML miRNA-Seq tumor_bone_marrow CPT0395000002 6e87c1b9-c2fe-481d-9474-e47b4c4605f7_mirnaseq_gdc_realn.bam 297603488 BAM harmonized CPTAC3 fb8cf12b-b42c-4879-97bf-0fa448c1abf5 a5c8296324aabc8063e641f50decb340 {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.RNA-Seq.chimeric.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.chimeric.gdc_realn.bam 139385777 BAM chimeric harmonized CPTAC3 f2bcda37-08db-4f49-8799-8e68789534f7 e0a52e4a9fc6be515ca2ee6ece4f5905 {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.RNA-Seq.genomic.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.genomic.gdc_realn.bam 8796614508 BAM genomic harmonized CPTAC3 31923aa6-86eb-4b44-8306-54ea4f5977d5 c0229a1c545e82483b09b8da48b7e508 {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.RNA-Seq.S4_L001_R1.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R1_001.fastq.gz 4331029607 FASTQ S4_L001_R1 unaligned CPTAC3 f5f11d2f-613f-48f1-ac63-f9064be02cb4 1772b69ed9be8758443dc35a7a1f19a1 {"aliquot_tag": "ALQ_823336a8", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.RNA-Seq.S4_L001_R2.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R2_001.fastq.gz 4902540092 FASTQ S4_L001_R2 unaligned CPTAC3 585ffa5e-16be-4a73-b6be-685582e95dc2 f1090b2d4335cd0e32a1d9c4e92ec52c {"aliquot_tag": "ALQ_823336a8", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.RNA-Seq.transcriptome.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.transcriptome.gdc_realn.bam 10773946962 BAM transcriptome harmonized CPTAC3 5a13bee5-20ec-447b-afa9-40daf6258ad9 db2f8ee158a0ddca82f5e775f07ee10d {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.WGS.Nbc C3L-06806 AML WGS buccal_normal CPT0395090002 CPT0395090002.WholeGenome.RP-2158.bam 70305255645 BAM aligned CPTAC3 e7dfb363-efbb-400c-8899-08b6fb28871e 8c8b7472a8999ce42f86e33553fcb830 {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06806.WGS.Nbc.hg38 C3L-06806 AML WGS buccal_normal CPT0395090002 3a30f07b-1d50-4585-832d-9702d446060b_wgs_gdc_realn.bam 204000841502 BAM harmonized CPTAC3 0c557241-6ab1-42cb-b964-30c1cf2c62b2 1dcbfcf440e6dfe86734d654eb74082e {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06806.WGS.Tbm C3L-06806 AML WGS tumor_bone_marrow CPT0394990002 CPT0394990002.WholeGenome.RP-2158.bam 53220155635 BAM aligned CPTAC3 a1da9905-acf4-4d48-a195-8a6bbfb85b8c 2585eeb36837f7ebcabe8fce15434d52 {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.WGS.Tbm.hg38 C3L-06806 AML WGS tumor_bone_marrow CPT0394990002 2db84bd7-0618-44c7-888f-04649732c477_wgs_gdc_realn.bam 150720677216 BAM harmonized CPTAC3 ec74a3e3-fe3d-469a-8b73-96f5f2e1539f 62d192d98b3ce38fab5bb4de5ffb575a {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.WXS.Nbc C3L-06806 AML WXS buccal_normal CPT0395090002 CPT0395090002.WholeExome.RP-1303.bam 24819494957 BAM aligned CPTAC3 3c0b8f60-6e11-48d0-b4c4-b63543d9c9da c37b3c7f073d350aee432c07048ff19b {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06806.WXS.Nbc.hg38 C3L-06806 AML WXS buccal_normal CPT0395090002 3a30f07b-1d50-4585-832d-9702d446060b_wxs_gdc_realn.bam 34201681879 BAM harmonized CPTAC3 bf4c8c61-9d59-4a3a-952f-bd5ede4dd1f0 b9fffa000c5e5857bbcfc4c222db3681 {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06806.WXS.Tbm C3L-06806 AML WXS tumor_bone_marrow CPT0394990002 CPT0394990002.WholeExome.RP-1303.bam 21102974928 BAM aligned CPTAC3 cd871dda-f790-4d8a-93f8-8fd0bbddb25b 964c871ce47b807ddcba3665bd1be81b {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06806.WXS.Tbm.hg38 C3L-06806 AML WXS tumor_bone_marrow CPT0394990002 2db84bd7-0618-44c7-888f-04649732c477_wxs_gdc_realn.bam 29155742449 BAM harmonized CPTAC3 dbd8fb1f-b35d-49c0-b88c-1c79f192c8df 792a98a8a6e42d817351c8bb9b82c532 {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.MethArray.Green.Tbm C3L-06807 AML Methylation_Array tumor_bone_marrow CPT0395130002 205555380136_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 cd9cde37-3b56-4ffe-be2a-565be0acc4ce b36b1e83d7e87bcb2f1b89bf59f2140a {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.MethArray.Red.Tbm C3L-06807 AML Methylation_Array tumor_bone_marrow CPT0395130002 205555380136_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 8876c61a-3d01-4c6f-810f-469878076a04 10849ac2956408b085e7990050fd5719 {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.miRNA-Seq.S22_L007_R1.Tbm C3L-06807 AML miRNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTTGTA_S22_L007_R1_001.unaln.bam 327432901 BAM S22_L007_R1 unaligned CPTAC3 f4bc6e8e-2d7a-40fa-8359-e68b94dfb704 d203634d37deaab03afe2529f50822ab {"aliquot_tag": "ALQ_bcef43cd", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.miRNA-Seq.Tbm.hg38 C3L-06807 AML miRNA-Seq tumor_bone_marrow CPT0395140002 96551fae-a02c-4c79-979e-9c2e7c137e14_mirnaseq_gdc_realn.bam 341844415 BAM harmonized CPTAC3 cdb9ec31-b9c2-4e02-9203-c3c1d93fff14 42cb61780a0e3491747e2e0866536aa2 {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.RNA-Seq.chimeric.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.chimeric.gdc_realn.bam 88091711 BAM chimeric harmonized CPTAC3 6248136d-7486-40fe-950d-c1ed520c3b07 5f1ee48e2d988f798ac4a36fbfd341b1 {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.RNA-Seq.genomic.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.genomic.gdc_realn.bam 8337747777 BAM genomic harmonized CPTAC3 71f4c878-35cc-4003-96c3-9b30604242b8 86568583a1e8b1b564b29c64a3772dfe {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.RNA-Seq.S2_L001_R1.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R1_001.fastq.gz 3691170140 FASTQ S2_L001_R1 unaligned CPTAC3 fccb07d3-3428-4b00-ae11-1a0447e36d72 8af97876734e942098ecf4eac3358b86 {"aliquot_tag": "ALQ_bcef43cd", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.RNA-Seq.S2_L001_R2.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R2_001.fastq.gz 4227720079 FASTQ S2_L001_R2 unaligned CPTAC3 f7500ab8-09a8-4546-9672-945cb3e59038 e21c09021dcf609de60728e37b99b7f6 {"aliquot_tag": "ALQ_bcef43cd", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.RNA-Seq.transcriptome.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.transcriptome.gdc_realn.bam 10452764936 BAM transcriptome harmonized CPTAC3 e87aab6e-f620-45b9-bbf0-64ddd52e9d70 a18ce028a2d1fce7b892b3c46e2f359f {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.WGS.Nbc C3L-06807 AML WGS buccal_normal CPT0395180002 CPT0395180002.WholeGenome.RP-2158.bam 54652441435 BAM aligned CPTAC3 ee3e9819-a537-49d6-bede-82bc5bbb9dde 51bed20f3cd4d49c4e8578224fa8ac9f {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06807.WGS.Nbc.hg38 C3L-06807 AML WGS buccal_normal CPT0395180002 c68a5bcd-cb06-4682-9639-359f86ec9dac_wgs_gdc_realn.bam 165305986166 BAM harmonized CPTAC3 a5e65538-6337-4ca8-80e1-08d7f8916278 cc3bc0a96a01257e41fa0f7f59f01df4 {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06807.WGS.Tbm C3L-06807 AML WGS tumor_bone_marrow CPT0395130002 CPT0395130002.WholeGenome.RP-2158.bam 50481499338 BAM aligned CPTAC3 6eec7a32-f07c-45ab-9ef8-1f57bf4fd58c 45adac0222e4f18df2ed2ea92192eabe {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.WGS.Tbm.hg38 C3L-06807 AML WGS tumor_bone_marrow CPT0395130002 d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wgs_gdc_realn.bam 153701170789 BAM harmonized CPTAC3 532cdf3e-715b-41c7-af0f-e9ff9a4fb643 a8b2d8d05c6da6538f2bf00ef31a8ace {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.WXS.Nbc C3L-06807 AML WXS buccal_normal CPT0395180002 CPT0395180002.WholeExome.RP-1303.bam 26877871354 BAM aligned CPTAC3 8cd2af62-e664-46d2-8779-b8544bb11967 4c2e863f349ad92ad9d064dc223e8256 {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06807.WXS.Nbc.hg38 C3L-06807 AML WXS buccal_normal CPT0395180002 c68a5bcd-cb06-4682-9639-359f86ec9dac_wxs_gdc_realn.bam 37138537545 BAM harmonized CPTAC3 ef32ceab-0642-43ae-a9b2-3267328f1ff9 b822715341a3f419cd3dbff4f91b2ef9 {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06807.WXS.Tbm C3L-06807 AML WXS tumor_bone_marrow CPT0395130002 CPT0395130002.WholeExome.RP-1303.bam 20504709483 BAM aligned CPTAC3 a5acc15a-ee23-4e0b-80d7-19b38c0c73d3 bfac3b1f88b5e2e9052de10bd50d54b0 {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06807.WXS.Tbm.hg38 C3L-06807 AML WXS tumor_bone_marrow CPT0395130002 d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wxs_gdc_realn.bam 28299634890 BAM harmonized CPTAC3 8a45f79a-4cdb-4c86-91bb-e82d221fb190 6225d5b140f9927d6eab7cc513549b75 {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.MethArray.Green.Tbm C3L-06809 AML Methylation_Array tumor_bone_marrow CPT0423800002 205705520128_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 94825f27-9b10-43c0-ab4b-a5b28463de6a 03dfc288a40f1a04e8419b14d2af792b {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.MethArray.Red.Tbm C3L-06809 AML Methylation_Array tumor_bone_marrow CPT0423800002 205705520128_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 ccdabe3f-7619-4210-a417-0024b45216ec e672b577a22ba3ac1fd1b831d0062850 {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.miRNA-Seq.S40_L002_R1.Tbm C3L-06809 AML miRNA-Seq tumor_bone_marrow CPT0423790002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTTTCG_S40_L002_R1_001.unaln.bam 215564046 BAM S40_L002_R1 unaligned CPTAC3 73739b6a-96f9-42d0-a087-8da711422ef7 006977cf7f01eb42434bb97d51434df0 {"aliquot_tag": "ALQ_c8fd20c4", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.miRNA-Seq.Tbm.hg38 C3L-06809 AML miRNA-Seq tumor_bone_marrow CPT0423790002 9f2bc07b-5439-4d0a-b880-b4dac65a5f75_mirnaseq_gdc_realn.bam 236354089 BAM harmonized CPTAC3 2017eced-1b1e-4ad4-ad1b-d6cfbec052d0 d9a51a3b9c4e69f0b1896db06e7b2b90 {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.RNA-Seq.chimeric.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.chimeric.gdc_realn.bam 461234582 BAM chimeric harmonized CPTAC3 8775293b-bc7b-4087-bcec-8eadea926eb3 b5ff44b4f42591738fe069fa8514a8dd {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.RNA-Seq.genomic.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.genomic.gdc_realn.bam 6365773938 BAM genomic harmonized CPTAC3 dfabc53c-4df4-4610-a45c-64257d3d03d9 57a6da15f6a684606f140864d279997c {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.RNA-Seq.S15_L004_R1.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R1_001.fastq.gz 3191057802 FASTQ S15_L004_R1 unaligned CPTAC3 ed6cfd64-6e72-42b6-844e-88234f7dbd0f ae636da75fa1b8ec2ca83a0f54d85e61 {"aliquot_tag": "ALQ_c8fd20c4", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.RNA-Seq.S15_L004_R2.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R2_001.fastq.gz 3380156902 FASTQ S15_L004_R2 unaligned CPTAC3 fa5593e4-49bc-4567-84aa-3e6ed2214956 92cec9b832440c9f2cd8454ff4289f49 {"aliquot_tag": "ALQ_c8fd20c4", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.RNA-Seq.transcriptome.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.transcriptome.gdc_realn.bam 6753111201 BAM transcriptome harmonized CPTAC3 f1452d06-5ff6-4c59-ad04-c1192939ec7e 6cdd62d1952ea7b4c30af3145672e2a2 {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.WGS.Nbc C3L-06809 AML WGS buccal_normal CPT0423880001 CPT0423880001.WholeGenome.RP-2158.bam 45467051600 BAM aligned CPTAC3 9e511863-7709-4f6a-94ad-79b844931036 a2d03a33cf7f4a5a2eaea22023ca770b {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06809.WGS.Nbc.hg38 C3L-06809 AML WGS buccal_normal CPT0423880001 f12c5166-abe3-410e-9aea-37ef5d8bbe01_wgs_gdc_realn.bam 132246422085 BAM harmonized CPTAC3 57d26f1b-6ee3-425e-bab0-a006fab6ce90 c320ea25476e942b98e7735b7e50ed01 {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06809.WGS.Tbm C3L-06809 AML WGS tumor_bone_marrow CPT0423800002 CPT0423800002.WholeGenome.RP-2158.bam 52132870980 BAM aligned CPTAC3 6a38ea85-b31f-430e-bf26-a89bc0ee091e 84c20dca3789aa0ba8df6cc75a7c3ef7 {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.WGS.Tbm.hg38 C3L-06809 AML WGS tumor_bone_marrow CPT0423800002 fde4043f-91a8-42b6-8370-c1322ce342a7_wgs_gdc_realn.bam 153751798796 BAM harmonized CPTAC3 d5f641bb-a84b-4cb2-932f-e25c73ef9081 0aeaa193d8664364a4ffb5e33ec78f5c {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.WXS.Nbc C3L-06809 AML WXS buccal_normal CPT0423880001 CPT0423880001.WholeExome.RP-1303.bam 15058857765 BAM aligned CPTAC3 1e3d84db-47d4-46b1-91c1-fc5173c5ba15 99ba78f20f60d821cbbe290a93d5421f {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06809.WXS.Nbc.hg38 C3L-06809 AML WXS buccal_normal CPT0423880001 f12c5166-abe3-410e-9aea-37ef5d8bbe01_wxs_gdc_realn.bam 20270095113 BAM harmonized CPTAC3 b95d946c-ecc7-4fdf-96d6-76d3ee43c96d cf9d5e475dd8f8a828fa4d60b1705204 {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06809.WXS.Tbm C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 CPT0423800002.WholeExome.RP-1303.bam 22623712547 BAM aligned CPTAC3 52ff40ad-09e1-436a-9c29-18e9775426f0 5869900d905564e8fb2fd52e03592ba3 {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06809.WXS.Tbm.hg38 C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 fde4043f-91a8-42b6-8370-c1322ce342a7_wxs_gdc_realn.bam 31582854239 BAM harmonized CPTAC3 a8d547fc-05e3-482d-8b31-68ce5408887a 4703caaf6cc1d1dbafa4e16e3b44c06a {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06912.MethArray.Green.T C3L-06912 LGG Methylation_Array tumor CPT0388940011 206009560066_R04C01_Grn.idat 13677950 IDAT Green NA CPTAC3 d8921cb7-13c6-493a-bec1-956b0c0b9acf b986d5a861649338c3fdd0b9409b907a {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor"} -C3L-06912.MethArray.Red.T C3L-06912 LGG Methylation_Array tumor CPT0388940011 206009560066_R04C01_Red.idat 13677950 IDAT Red NA CPTAC3 b31b7919-5e5e-4f48-b680-be7b5b94935c eb5afa5e81d98239383277ef71b86715 {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor"} -C3L-06912.miRNA-Seq.S5_L003_R1.T C3L-06912 LGG miRNA-Seq tumor CPT0388940008 220505_UNC32-K00270_0319_AHMV2KBBXY_CGGAAT_S5_L003_R1_001.unaln.bam 386996923 BAM S5_L003_R1 unaligned CPTAC3 c31ac29e-a56e-4e48-b377-caf32badf113 b3050cf5276ec747c59d992e1fc45dd1 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-06912.miRNA-Seq.T.hg38 C3L-06912 LGG miRNA-Seq tumor CPT0388940008 dd37739a-f81b-472f-89ea-f146d9ac356a_mirnaseq_gdc_realn.bam 436232429 BAM harmonized CPTAC3 a25db8b9-eabf-48f6-b771-a622614d55e7 4b6810155e49b65050a0ccd59f8ddd24 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor"} -C3L-06912.RNA-Seq.S2_L006_R1.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R1_001.fastq.gz 3876945813 FASTQ S2_L006_R1 unaligned CPTAC3 8f2c2b6c-85de-49cf-86b7-f760a75e157a 0069031bc035562f5cc4e483f50f2875 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-06912.RNA-Seq.S2_L006_R2.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R2_001.fastq.gz 4045804806 FASTQ S2_L006_R2 unaligned CPTAC3 9ff596fa-a71c-47cb-8547-114e3ba9da05 42a0d1c88599d3a9538397a067738f51 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.miRNA-Seq.S24_L005_R1.Tbm C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 239355372 BAM S24_L005_R1 unaligned CPTAC3 b59050bc-46cd-4685-885c-0158c2668e4c 1e2c1fba0ad0a930d6d10ea006301cca {"aliquot_tag": "ALQ_698c9c17", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.miRNA-Seq.Tbm.hg38 C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 bcc331a7-1f4e-4020-aae8-08f6d960d7f8_mirnaseq_gdc_realn.bam 249744954 BAM harmonized CPTAC3 5bf42a7a-6a8c-437e-8125-e87234c84ddb ea7ea497e1937eb7ea1ea6e3c5171a21 {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.RNA-Seq.chimeric.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.chimeric.gdc_realn.bam 396600781 BAM chimeric harmonized CPTAC3 931c1a2e-2cb3-4d27-9995-52c931611f94 92984513e647d89a0fd89436d127451a {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.RNA-Seq.genomic.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.genomic.gdc_realn.bam 10003377970 BAM genomic harmonized CPTAC3 d875ab14-6fa7-4323-965b-b2ceefaaa97f 6b409eb2c163ffa6acfa220c71e73f48 {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.RNA-Seq.S6_L002_R1.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R1_001.fastq.gz 4888313496 FASTQ S6_L002_R1 unaligned CPTAC3 72612251-54a1-4fc4-a820-484b2c7da4b8 fcb2d69ec54b658b465679b9a2216b1f {"aliquot_tag": "ALQ_698c9c17", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.RNA-Seq.S6_L002_R2.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R2_001.fastq.gz 5232313383 FASTQ S6_L002_R2 unaligned CPTAC3 73c35958-c9f9-474c-bf29-4a69904abece 432af186c1b8113dc77e5d9a4fb23999 {"aliquot_tag": "ALQ_698c9c17", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.RNA-Seq.transcriptome.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.transcriptome.gdc_realn.bam 10806456734 BAM transcriptome harmonized CPTAC3 83b9cadf-dc16-4054-a449-8bbdad4c501b 2e20fe6b1a1eaca6128e6ba7ca359977 {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.WGS.Nbc C3L-06951 AML WGS buccal_normal CPT0394950002 CPT0394950002.WholeGenome.RP-2158.bam 44455880668 BAM aligned CPTAC3 e3edf313-263b-4cc0-8437-e6589bff148a c3bd91857360d1647eb5cdf40406fe52 {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06951.WGS.Nbc.hg38 C3L-06951 AML WGS buccal_normal CPT0394950002 6e106fcb-29f4-4c38-a4d2-920f1483a216_wgs_gdc_realn.bam 132392147301 BAM harmonized CPTAC3 78899104-aff8-41cb-865c-bbcda214cde3 b2d67cfe0eda5f04b32de7460e43170b {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06951.WGS.Tbm C3L-06951 AML WGS tumor_bone_marrow CPT0394100002 CPT0394100002.WholeGenome.RP-2158.bam 51518910865 BAM aligned CPTAC3 f2307760-ea9f-4d75-9a90-9e4d1788e655 409fcb59e293d4a9635857d5c7f9aa93 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.WGS.Tbm.hg38 C3L-06951 AML WGS tumor_bone_marrow CPT0394100002 cf505366-987d-4e91-b5fb-696d2cde908a_wgs_gdc_realn.bam 156050815880 BAM harmonized CPTAC3 097d3f76-6044-4639-a353-cddbae861463 7a8fb6e5ab7c623063bca5a89e73bb8b {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.WXS.Nbc C3L-06951 AML WXS buccal_normal CPT0394950002 CPT0394950002.WholeExome.RP-1303.bam 37650241835 BAM aligned CPTAC3 cd9384fa-19fc-4279-8626-5ccfcbef03b9 515effcc82d62bac2db60d83db74acea {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06951.WXS.Nbc.hg38 C3L-06951 AML WXS buccal_normal CPT0394950002 6e106fcb-29f4-4c38-a4d2-920f1483a216_wxs_gdc_realn.bam 51682983387 BAM harmonized CPTAC3 df688043-449a-4715-ada1-d3a72f034115 a17f7a02dcac079d50178c6859e0eaa5 {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06951.WXS.Tbm C3L-06951 AML WXS tumor_bone_marrow CPT0394100002 CPT0394100002.WholeExome.RP-1303.bam 21283649473 BAM aligned CPTAC3 76e68d71-001f-4ded-94f7-b92ed5762c48 548350a2d6d7ecdb27e87c4c5befc0d7 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06951.WXS.Tbm.hg38 C3L-06951 AML WXS tumor_bone_marrow CPT0394100002 cf505366-987d-4e91-b5fb-696d2cde908a_wxs_gdc_realn.bam 29310105335 BAM harmonized CPTAC3 9bae9f55-ce2d-472c-9de6-1cce8a6931fe 52041bbcec90426e6600ccc2e98f12e9 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.MethArray.Green.Tbm C3L-06952 AML Methylation_Array tumor_bone_marrow CPT0395410002 205549610123_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d93d95c0-f3cf-40f9-a6b2-d5b18c8d6b4c 6d1c2ec61e02ccc261a584375fe2b0f7 {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.MethArray.Red.Tbm C3L-06952 AML Methylation_Array tumor_bone_marrow CPT0395410002 205549610123_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 098a232b-68bf-41f7-9041-7a64ac08f27f f182dc9282d1d18d7dc4a6f62666910e {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.miRNA-Seq.S17_L007_R1.Tbm C3L-06952 AML miRNA-Seq tumor_bone_marrow CPT0395420002 210331_UNC31-K00269_0297_AHKCFKBBXY_AGTTCC_S17_L007_R1_001.unaln.bam 327307434 BAM S17_L007_R1 unaligned CPTAC3 15c6d0d0-c26b-436a-b545-d5aaadeca776 e0588f2165419d02a5f78aa973e31f67 {"aliquot_tag": "ALQ_636227de", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.miRNA-Seq.Tbm.hg38 C3L-06952 AML miRNA-Seq tumor_bone_marrow CPT0395420002 30fc53f9-bc30-4b18-b02f-34e978ab3f58_mirnaseq_gdc_realn.bam 341488236 BAM harmonized CPTAC3 f9ae69cb-e501-4a27-895a-de92b3042c75 0b8c2f0beaf7b602295050175224a8ea {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.RNA-Seq.chimeric.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.chimeric.gdc_realn.bam 232963356 BAM chimeric harmonized CPTAC3 b833b07a-ed58-45d1-8647-8ca02985888d 53fc0f1bc4f5a82b68ff7daadf18abc0 {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.RNA-Seq.genomic.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.genomic.gdc_realn.bam 8571025082 BAM genomic harmonized CPTAC3 356413dc-97fb-4db0-87a6-506fc0290c62 9a9667c9fbc5d00f56e30bf4d19bc352 {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.RNA-Seq.S60_L007_R1.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R1_001.fastq.gz 3968146646 FASTQ S60_L007_R1 unaligned CPTAC3 782c5640-f8b7-45b8-ac5a-76650aa56634 836c7e2dd63131c7714545a2181cd09b {"aliquot_tag": "ALQ_636227de", "sample": "S60", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.RNA-Seq.S60_L007_R2.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R2_001.fastq.gz 4408260299 FASTQ S60_L007_R2 unaligned CPTAC3 53e1a623-56d3-4599-b9a1-2d4e77e67906 c9cda8d3c68b5197ba51dd804c66932d {"aliquot_tag": "ALQ_636227de", "sample": "S60", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.RNA-Seq.transcriptome.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.transcriptome.gdc_realn.bam 8656496991 BAM transcriptome harmonized CPTAC3 0c5f1608-a6c7-4c9e-8888-a0e07b4ade5c 2448895826651d406ca0ff24bc128bf4 {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.WGS.Nbc C3L-06952 AML WGS buccal_normal CPT0395510002 CPT0395510002.WholeGenome.RP-2158.bam 75954257744 BAM aligned CPTAC3 0a5356fd-1f3f-4a03-b523-d7964e39bcc4 2c2a6e364f65c6d24143435e958d48a0 {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06952.WGS.Nbc.hg38 C3L-06952 AML WGS buccal_normal CPT0395510002 c1f795c9-57d0-4621-9675-cbffdae3e8e2_wgs_gdc_realn.bam 228222566924 BAM harmonized CPTAC3 fe83e9be-7e7a-4295-906d-0317b2a405b5 0471dda043fd793e1447dd603f6a5c54 {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06952.WGS.Tbm C3L-06952 AML WGS tumor_bone_marrow CPT0395410002 CPT0395410002.WholeGenome.RP-2158.bam 51171230305 BAM aligned CPTAC3 9026673e-52de-47de-b603-fdc55fbb7b9c 9d179a1ad9d9b6f787093f009a77f4eb {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.WGS.Tbm.hg38 C3L-06952 AML WGS tumor_bone_marrow CPT0395410002 156bb375-1e32-45ea-b6bb-2c8264042561_wgs_gdc_realn.bam 150043727921 BAM harmonized CPTAC3 e786c669-ae8d-4f7e-9ff3-a8b674b81574 85f9b048311ba91ade683b6d76cd5f1d {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.WXS.Nbc C3L-06952 AML WXS buccal_normal CPT0395510002 CPT0395510002.WholeExome.RP-1303.bam 22002595662 BAM aligned CPTAC3 01fca049-65fd-405b-b63a-b4dff2df8b78 c88373707a0553874a48ded5e5e7978b {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06952.WXS.Nbc.hg38 C3L-06952 AML WXS buccal_normal CPT0395510002 c1f795c9-57d0-4621-9675-cbffdae3e8e2_wxs_gdc_realn.bam 29996042851 BAM harmonized CPTAC3 6675d018-2b90-40db-9ce3-4a5b08793284 eba03d6d0ea9e55d234021aa1c943bad {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06952.WXS.Tbm C3L-06952 AML WXS tumor_bone_marrow CPT0395410002 CPT0395410002.WholeExome.RP-1303.bam 26950284899 BAM aligned CPTAC3 49f23ebb-f5e4-45e6-8527-8a503fa8d973 5aa26de6bfc81a9b12b3316f4188ac4f {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06952.WXS.Tbm.hg38 C3L-06952 AML WXS tumor_bone_marrow CPT0395410002 156bb375-1e32-45ea-b6bb-2c8264042561_wxs_gdc_realn.bam 37511199516 BAM harmonized CPTAC3 3076a431-760e-4f15-b24e-c563256de372 5d0fbde8fbe847caabcaacddfa254c1f {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.MethArray.Green.Tbm C3L-06953 AML Methylation_Array tumor_bone_marrow CPT0395220002 205555380155_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 41d398d2-add1-4700-8e43-12ebd5fdaf9d 3588200eefeeb1d11205bfecaa1a5567 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.MethArray.Red.Tbm C3L-06953 AML Methylation_Array tumor_bone_marrow CPT0395220002 205555380155_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 a15ce8cf-917d-4168-9823-35531af05a65 e5a58770087e976a8d8b46910b76f010 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.miRNA-Seq.S16_L007_R1.Tbm C3L-06953 AML miRNA-Seq tumor_bone_marrow CPT0395230002 210331_UNC31-K00269_0297_AHKCFKBBXY_AGTCAA_S16_L007_R1_001.unaln.bam 271339385 BAM S16_L007_R1 unaligned CPTAC3 dde5945b-0705-49da-9970-fa7f98623c57 0d14b7e872af879dcd4273ad0295ad0e {"aliquot_tag": "ALQ_885bed73", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.miRNA-Seq.Tbm.hg38 C3L-06953 AML miRNA-Seq tumor_bone_marrow CPT0395230002 91e85879-662c-4c71-980d-a58e4732345b_mirnaseq_gdc_realn.bam 282770503 BAM harmonized CPTAC3 4b7fa91e-ec25-4252-acd3-8cbe2de3a819 737111ffb2e0340b96030f512d76f7e6 {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.RNA-Seq.chimeric.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.chimeric.gdc_realn.bam 94701367 BAM chimeric harmonized CPTAC3 4a63c44e-3977-446b-a158-4239e218b08b 7136b10989960cfdab523e607c7d584f {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.RNA-Seq.genomic.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.genomic.gdc_realn.bam 8461643378 BAM genomic harmonized CPTAC3 aeab5b3a-51a4-466e-90ad-08e8b706dac5 a3e3bb4d7ff33baed2d1f5e36b5ef398 {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.RNA-Seq.S58_L007_R1.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R1_001.fastq.gz 4203285851 FASTQ S58_L007_R1 unaligned CPTAC3 5d86a6e3-615a-4394-991c-d9e3b53524ba b7abc88f28809b9e5f42cdf185dedcdb {"aliquot_tag": "ALQ_885bed73", "sample": "S58", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.RNA-Seq.S58_L007_R2.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R2_001.fastq.gz 4610087193 FASTQ S58_L007_R2 unaligned CPTAC3 c6aefb82-695a-4f31-9bc4-7b18ad9c12c5 2448c00e2c1418f9f3734cafd690d637 {"aliquot_tag": "ALQ_885bed73", "sample": "S58", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.RNA-Seq.transcriptome.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.transcriptome.gdc_realn.bam 10798323578 BAM transcriptome harmonized CPTAC3 23c3b280-08e9-44db-9187-7dfc79749f62 2f8ca24193a381de3c6931ee525caf34 {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.WGS.Nbc C3L-06953 AML WGS buccal_normal CPT0395300002 CPT0395300002.WholeGenome.RP-2158.bam 57220760446 BAM aligned CPTAC3 3f946631-f3c1-46c8-aaf5-a8784b22aa55 b240be47d491fa75ae611d2d585f5012 {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06953.WGS.Nbc.hg38 C3L-06953 AML WGS buccal_normal CPT0395300002 cc7377a7-4292-4a42-888a-59e14942e42f_wgs_gdc_realn.bam 167692914296 BAM harmonized CPTAC3 afa8c524-60e7-423b-9677-8653c4a5da65 9620afeaef05f9ea15920e46b33c7cfb {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06953.WGS.Tbm C3L-06953 AML WGS tumor_bone_marrow CPT0395220002 CPT0395220002.WholeGenome.RP-2158.bam 60825726424 BAM aligned CPTAC3 e2bad822-24ea-4524-aa4d-599c4b537429 6193087ce48179e4977d620ea6031f4e {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.WGS.Tbm.hg38 C3L-06953 AML WGS tumor_bone_marrow CPT0395220002 19eadde7-2a40-4880-900d-440197bd5266_wgs_gdc_realn.bam 181530152719 BAM harmonized CPTAC3 02b919c1-e7df-495f-8084-65f8a1af6e45 f0ebf7225cd6b3efc6b4d2f46b513202 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.WXS.Nbc C3L-06953 AML WXS buccal_normal CPT0395300002 CPT0395300002.WholeExome.RP-1303.bam 28034794123 BAM aligned CPTAC3 dfad5081-80c8-40d7-94e6-6a2f88a4aa4f d35dd7df532947c08d9638282d1cff69 {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06953.WXS.Nbc.hg38 C3L-06953 AML WXS buccal_normal CPT0395300002 cc7377a7-4292-4a42-888a-59e14942e42f_wxs_gdc_realn.bam 38181902951 BAM harmonized CPTAC3 ed6f6bd3-3d31-4dd8-8cb8-0bde987c9a1e 3a86e81f5db91985056d18f26a1f5be5 {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06953.WXS.Tbm C3L-06953 AML WXS tumor_bone_marrow CPT0395220002 CPT0395220002.WholeExome.RP-1303.bam 24227511690 BAM aligned CPTAC3 aa489119-ef01-4338-839b-0ffd14832733 fef39eaa9967b4cb9bee274e7bc5fee5 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06953.WXS.Tbm.hg38 C3L-06953 AML WXS tumor_bone_marrow CPT0395220002 19eadde7-2a40-4880-900d-440197bd5266_wxs_gdc_realn.bam 33729200165 BAM harmonized CPTAC3 b586f9bd-1b9f-4d68-8b7c-3b37b97a3725 228b495fa148a365010b298b19f6f619 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.MethArray.Green.Tbm C3L-06954 AML Methylation_Array tumor_bone_marrow CPT0423470002 205705520145_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9c9659b5-caf6-4956-ae98-477e852aae4a b5fbb4e428a9fa450332d36623ebd897 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.MethArray.Red.Tbm C3L-06954 AML Methylation_Array tumor_bone_marrow CPT0423470002 205705520145_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 afb0c87d-0ea7-42c4-9de4-14e13c14d3f8 670330814ac3fe8cc5bd8be57f09bac2 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.miRNA-Seq.S38_L002_R1.Tbm C3L-06954 AML miRNA-Seq tumor_bone_marrow CPT0423480002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTCCGC_S38_L002_R1_001.unaln.bam 275216986 BAM S38_L002_R1 unaligned CPTAC3 3a167d9a-82fb-4944-8ecb-9b090de78afd ed473fffc34a385a69df8c8a79d62076 {"aliquot_tag": "ALQ_73097bda", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.miRNA-Seq.Tbm.hg38 C3L-06954 AML miRNA-Seq tumor_bone_marrow CPT0423480002 246cd9e5-be9c-46e0-8a7a-d2416500ce06_mirnaseq_gdc_realn.bam 303033677 BAM harmonized CPTAC3 c30d807f-37c6-49c5-bec0-fbcaf4810ce0 67d32d2900fccfde21d0c9cdc04d9f3a {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.RNA-Seq.chimeric.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.chimeric.gdc_realn.bam 472668209 BAM chimeric harmonized CPTAC3 e622cb1f-a8cd-4317-99ea-0d2f0e432e90 15668aba093a77944c4ad48a1cf7e44a {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.RNA-Seq.genomic.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.genomic.gdc_realn.bam 6902144941 BAM genomic harmonized CPTAC3 c4de3061-8b9c-40fe-bd11-b6eecfab8f07 085485ded0a02696a89aae647534ec40 {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.RNA-Seq.S11_L003_R1.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3449383220 FASTQ S11_L003_R1 unaligned CPTAC3 6e69dd94-7aee-4c00-9685-cc4ba3fd648c c8e51812e89e631307f0bae7fdaf76a4 {"aliquot_tag": "ALQ_73097bda", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.RNA-Seq.S11_L003_R2.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3638286868 FASTQ S11_L003_R2 unaligned CPTAC3 a266ecc3-6056-4bf3-b120-43a4c9028a9e 55a485a38fb6e5ec2ec317af2f2c551c {"aliquot_tag": "ALQ_73097bda", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.RNA-Seq.transcriptome.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.transcriptome.gdc_realn.bam 7750372808 BAM transcriptome harmonized CPTAC3 9c2266d6-7dbe-485a-a83d-3b7af76eee36 b0ad9e34c3b7e5e8f210ce5bddf50f6b {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.WGS.Nbc C3L-06954 AML WGS buccal_normal CPT0423500001 CPT0423500001.WholeGenome.RP-2158.bam 58884055193 BAM aligned CPTAC3 f7a5bedb-0983-4bdf-b113-c1ad8fa2ce97 fb465cef94ad852e1f9175e2ec6bf9ca {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06954.WGS.Nbc.hg38 C3L-06954 AML WGS buccal_normal CPT0423500001 ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wgs_gdc_realn.bam 188003601209 BAM harmonized CPTAC3 e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee 4336a22ce2d3fb0688f001561307386c {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06954.WGS.Tbm C3L-06954 AML WGS tumor_bone_marrow CPT0423470002 CPT0423470002.WholeGenome.RP-2158.bam 43251016065 BAM aligned CPTAC3 2f979a56-db4c-42cd-933d-ca5c169f8c66 d0cac524d0a7297b9ae021445c262d0b {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.WGS.Tbm.hg38 C3L-06954 AML WGS tumor_bone_marrow CPT0423470002 aa274cea-5bc3-419e-905e-3fd377deea83_wgs_gdc_realn.bam 126981110892 BAM harmonized CPTAC3 4aec74c8-8469-4ab7-874e-cd559c14c396 6c31cbc0c4c0e6fcdc9323fbcca69000 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.WXS.Nbc C3L-06954 AML WXS buccal_normal CPT0423500001 CPT0423500001.WholeExome.RP-1303.bam 24256707743 BAM aligned CPTAC3 296eb30a-fa65-4303-96b7-915727409251 07ebf0ec3b75938ad8b9c6ff95352a2b {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06954.WXS.Nbc.hg38 C3L-06954 AML WXS buccal_normal CPT0423500001 ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wxs_gdc_realn.bam 33673761951 BAM harmonized CPTAC3 82af1ee3-e913-4459-b382-234ff07db7c9 d037e87c2d83908b61f71cfd434bc808 {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06954.WXS.Tbm C3L-06954 AML WXS tumor_bone_marrow CPT0423470002 CPT0423470002.WholeExome.RP-1303.bam 24955957515 BAM aligned CPTAC3 6b5a4720-64bb-4a4a-b451-79e38291db71 1a8367f430206d28969a4068dfb68761 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06954.WXS.Tbm.hg38 C3L-06954 AML WXS tumor_bone_marrow CPT0423470002 aa274cea-5bc3-419e-905e-3fd377deea83_wxs_gdc_realn.bam 34659973786 BAM harmonized CPTAC3 6eb8ce2b-7b02-4f76-a9e9-337c110f9143 3901b0fe5124b8a8a6ce25e67432d74e {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-06956.MethArray.Green.Tpb C3L-06956 AML Methylation_Array tumor_peripheral_blood CPT0374940002 205707890143_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 eb1a15ed-0629-4f18-8074-548f3c644183 07e6fdcbaad467bb933fa856aeb4b93f {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.MethArray.Red.Tpb C3L-06956 AML Methylation_Array tumor_peripheral_blood CPT0374940002 205707890143_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 becba68d-6f48-4494-802c-88d2669cf05e 1352c365ebe97015246262fbeeb70b41 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.miRNA-Seq.S3_L001_R1.Tpb C3L-06956 AML miRNA-Seq tumor_peripheral_blood CPT0374950002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACGAT_S3_L001_R1_001.unaln.bam 358467091 BAM S3_L001_R1 unaligned CPTAC3 2cfcb7f4-d544-49b8-97de-27f441184fc7 067612655d6b83aa610de5653ab53052 {"aliquot_tag": "ALQ_de21f196", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.miRNA-Seq.Tpb.hg38 C3L-06956 AML miRNA-Seq tumor_peripheral_blood CPT0374950002 692193c7-43bd-4cb6-8d95-ea7bae96d1e2_mirnaseq_gdc_realn.bam 395286845 BAM harmonized CPTAC3 13951a81-a1c6-4955-b3be-1fb273603a1e ac427c830f9ad9873d7b520fd7278f4f {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.RNA-Seq.chimeric.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.chimeric.gdc_realn.bam 629501646 BAM chimeric harmonized CPTAC3 75d7ee0f-1e81-4109-bf9f-3319cfe8a266 9e2a4617d69266aadd9ae58317fa2d08 {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.RNA-Seq.genomic.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.genomic.gdc_realn.bam 9556913650 BAM genomic harmonized CPTAC3 4638749f-fa56-4155-98a8-eecd9834daa9 506b2b84af4a93a3345aa096bdd4ebe8 {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.RNA-Seq.S2_L001_R1.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R1_001.fastq.gz 4494920980 FASTQ S2_L001_R1 unaligned CPTAC3 6a2d3cf1-f333-4a81-97ba-debd9fcf5bd9 10318a1832969b899e26d67ea85c177a {"aliquot_tag": "ALQ_de21f196", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.RNA-Seq.S2_L001_R2.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R2_001.fastq.gz 4971841013 FASTQ S2_L001_R2 unaligned CPTAC3 118a555b-6ad2-4592-ad23-800e55af36cf 03e8f725b198b146e3200c3d06ad1f37 {"aliquot_tag": "ALQ_de21f196", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.RNA-Seq.transcriptome.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.transcriptome.gdc_realn.bam 7976814554 BAM transcriptome harmonized CPTAC3 831017b4-ef34-4289-8f4b-8ca332540f52 2005d55137e38fd1f63b34443e8bc4c1 {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.WGS.Nbc C3L-06956 AML WGS buccal_normal CPT0375020002 CPT0375020002.WholeGenome.RP-2158.bam 43333454812 BAM aligned CPTAC3 277f6625-57d6-4ec2-a153-c3e3b414b64d 672c0bafc967dc5057930d095c87fac9 {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06956.WGS.Nbc.hg38 C3L-06956 AML WGS buccal_normal CPT0375020002 804b5c18-8967-45ca-bc6c-43194e323041_wgs_gdc_realn.bam 130026449193 BAM harmonized CPTAC3 2e498503-abe4-4a2e-bd04-c67b0c6f4f21 b105bfd8e16dc093865ae20354372945 {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06956.WGS.Tpb C3L-06956 AML WGS tumor_peripheral_blood CPT0374940002 CPT0374940002.WholeGenome.RP-2158.bam 45296406538 BAM aligned CPTAC3 db7c9ffb-e3fc-41b2-8ff2-d6570c102778 40b8c4b2d90c7480788445e1d065216a {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.WGS.Tpb.hg38 C3L-06956 AML WGS tumor_peripheral_blood CPT0374940002 51774116-cdbd-4aa9-ac9b-acf207f1b92a_wgs_gdc_realn.bam 136257088788 BAM harmonized CPTAC3 a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8 65f76d5b645920ad83d7d7d9fb244d75 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.WXS.Nbc C3L-06956 AML WXS buccal_normal CPT0375020002 CPT0375020002.WholeExome.RP-1303.bam 27737887396 BAM aligned CPTAC3 3d734d08-7e85-4326-a4fa-b34a3130ba09 7957c31e83f282546bd7aa804d6344ea {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06956.WXS.Nbc.hg38 C3L-06956 AML WXS buccal_normal CPT0375020002 804b5c18-8967-45ca-bc6c-43194e323041_wxs_gdc_realn.bam 37221881366 BAM harmonized CPTAC3 f8d8ac5d-64bc-4103-8946-5a5d8a87d717 3b33c3cd6a5ca207fe909cc2edc83893 {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06956.WXS.Tpb C3L-06956 AML WXS tumor_peripheral_blood CPT0374940002 CPT0374940002.WholeExome.RP-1303.bam 23437020362 BAM aligned CPTAC3 7298cbd4-edb0-42c7-8fe5-4289a771c530 10a4b5af12a014868dc2a0f49350a564 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06956.WXS.Tpb.hg38 C3L-06956 AML WXS tumor_peripheral_blood CPT0374940002 51774116-cdbd-4aa9-ac9b-acf207f1b92a_wxs_gdc_realn.bam 32868413019 BAM harmonized CPTAC3 d55d74b0-9368-4db1-ad56-d5a2bfa515bb 1601648b4cab26bce48d2a6097dd6529 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.MethArray.Green.Tpb C3L-06960 AML Methylation_Array tumor_peripheral_blood CPT0391970002 205707890036_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 fc35487c-69cc-410a-aea6-0593173b5192 4a5ba335a0851b9698892f24e59cc637 {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.MethArray.Red.Tpb C3L-06960 AML Methylation_Array tumor_peripheral_blood CPT0391970002 205707890036_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 065201d5-0aa5-4ff3-ab51-bacb49408051 da6b8ea593f2c6148449a4ee3763ef38 {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.miRNA-Seq.S25_L002_R1.Tpb C3L-06960 AML miRNA-Seq tumor_peripheral_blood CPT0391980002 220125_UNC32-K00270_0311_AHMNYYBBXY_AGTCAA_S25_L002_R1_001.unaln.bam 294440865 BAM S25_L002_R1 unaligned CPTAC3 1b06ea8c-c156-4bed-8714-bc9434fe390f 2aef91b1aa6645da93269690bedeb042 {"aliquot_tag": "ALQ_610308b2", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.miRNA-Seq.Tpb.hg38 C3L-06960 AML miRNA-Seq tumor_peripheral_blood CPT0391980002 9efba198-49e6-4e3e-a632-fe36814c7336_mirnaseq_gdc_realn.bam 306803172 BAM harmonized CPTAC3 d835b66e-f355-4118-bee8-260ff7baa760 e3b78b76b14bb86a35fb80a6b977b3d4 {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.RNA-Seq.chimeric.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.chimeric.gdc_realn.bam 347462824 BAM chimeric harmonized CPTAC3 94ae252f-4412-4e35-b527-d3766256ab59 78686b235db61c8ce30912fa811c6a3b {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.RNA-Seq.genomic.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.genomic.gdc_realn.bam 7033891116 BAM genomic harmonized CPTAC3 66d47de4-8611-4a22-b172-b8d547c8e63e 62eb7bce53d2f7ea72506473704f679a {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.RNA-Seq.S7_L002_R1.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3385464526 FASTQ S7_L002_R1 unaligned CPTAC3 15059745-078d-4e41-a58e-3aabce6b8e30 df4e67d43335f4dd8f162796b91e5111 {"aliquot_tag": "ALQ_610308b2", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.RNA-Seq.S7_L002_R2.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3595422587 FASTQ S7_L002_R2 unaligned CPTAC3 d4495785-79a6-4be9-a9eb-1d45af1c84a3 950d67f187a0d45e22be7e9a07b163fa {"aliquot_tag": "ALQ_610308b2", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.RNA-Seq.transcriptome.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.transcriptome.gdc_realn.bam 8446428278 BAM transcriptome harmonized CPTAC3 231bfa39-0ed8-4fca-8ca5-f06631a04f4f 17ed3005a7f0b5afbbed694988ae34d0 {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.WGS.Nbc C3L-06960 AML WGS buccal_normal CPT0391930002 CPT0391930002.WholeGenome.RP-2158.bam 45097619411 BAM aligned CPTAC3 47fd7127-6985-4f77-a54a-7a4581074f39 fb739ee9c131b8e8c7e8fbb8d7d2eb0f {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06960.WGS.Nbc.hg38 C3L-06960 AML WGS buccal_normal CPT0391930002 46a69e2f-7525-48ee-9e1e-460646c051a1_wgs_gdc_realn.bam 133034482233 BAM harmonized CPTAC3 829aaac7-f4bf-464c-8823-3a474e550f29 1e919bbd80afed0c6831305f27f597b8 {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06960.WGS.Tpb C3L-06960 AML WGS tumor_peripheral_blood CPT0391970002 CPT0391970002.WholeGenome.RP-2158.bam 44778837234 BAM aligned CPTAC3 edafa772-9365-4baa-9c34-ea1e72f8bab3 32ebc1360d924a286337a2c9a57dd5ab {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.WGS.Tpb.hg38 C3L-06960 AML WGS tumor_peripheral_blood CPT0391970002 cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wgs_gdc_realn.bam 131643530554 BAM harmonized CPTAC3 71fada9d-8485-4d3a-bd18-413e4a5ccd49 a8a87130f553828b37f4f79deead2f9b {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.WXS.Nbc C3L-06960 AML WXS buccal_normal CPT0391930002 CPT0391930002.WholeExome.RP-1303.bam 28193236196 BAM aligned CPTAC3 f35c619d-8504-429e-8a9a-e0580110d06f 7fa0ed67d76c39156918290b57b3b4dc {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06960.WXS.Nbc.hg38 C3L-06960 AML WXS buccal_normal CPT0391930002 46a69e2f-7525-48ee-9e1e-460646c051a1_wxs_gdc_realn.bam 38170724026 BAM harmonized CPTAC3 08a63ff1-95e7-4eb4-9a5e-51bff51f2b51 cb62cee1bb6111566a28fc732f214faa {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06960.WXS.Tpb C3L-06960 AML WXS tumor_peripheral_blood CPT0391970002 CPT0391970002.WholeExome.RP-1303.bam 22943212472 BAM aligned CPTAC3 bedfbabf-373f-4507-85ac-ec986c655a85 71757f1a37b1427c614b4c2f196fd0b1 {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06960.WXS.Tpb.hg38 C3L-06960 AML WXS tumor_peripheral_blood CPT0391970002 cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wxs_gdc_realn.bam 32113200802 BAM harmonized CPTAC3 38d40850-2603-450c-8477-d3744bf24f22 840f7033b7b949dc8cbba73180b0482b {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.MethArray.Green.Tpb C3L-06981 AML Methylation_Array tumor_peripheral_blood CPT0404530002 205987770157_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 fbbd0ef4-f1e2-4205-b713-adfdeaa13e5d 26377aa1c3838e7760d8901fe5ca8e23 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.MethArray.Red.Tpb C3L-06981 AML Methylation_Array tumor_peripheral_blood CPT0404530002 205987770157_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 80f8cfe6-44cd-47cb-8b50-cb90f29585bc 5d65d8e3f3c490bd9a4147e1f7bcade8 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.miRNA-Seq.S3_L003_R1.Tpb C3L-06981 AML miRNA-Seq tumor_peripheral_blood CPT0404510002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACGAT_S3_L003_R1_001.unaln.bam 229303529 BAM S3_L003_R1 unaligned CPTAC3 f87581fa-f6e4-4cc0-8e38-d8ac74216084 d9b59304f418397b0daefe093a893f59 {"aliquot_tag": "ALQ_32c7f3fd", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.miRNA-Seq.Tpb.hg38 C3L-06981 AML miRNA-Seq tumor_peripheral_blood CPT0404510002 b381ae91-9163-4d85-b2eb-1846e2d1f048_mirnaseq_gdc_realn.bam 257635643 BAM harmonized CPTAC3 93e07315-0266-4761-a2ee-32ae02370f90 ced26ce085439b6315076ee7f585f18b {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.RNA-Seq.chimeric.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.chimeric.gdc_realn.bam 475251665 BAM chimeric harmonized CPTAC3 3fda4ed6-7d88-4de4-990b-0010dc7a0bbf 42a5c2cd1e15f169d0920bde0d3848bb {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.RNA-Seq.genomic.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.genomic.gdc_realn.bam 7572644391 BAM genomic harmonized CPTAC3 1c1b4b23-bc6b-46e9-b814-531b57e18dec 5438668bc5c1cd7fc366a7daa5346668 {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.RNA-Seq.S26_L007_R1.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R1_001.fastq.gz 3818718609 FASTQ S26_L007_R1 unaligned CPTAC3 11b4e608-a77f-4c41-9687-928b46e0844a 48ae34d0d7f477a69b8af6db0af942d6 {"aliquot_tag": "ALQ_32c7f3fd", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.RNA-Seq.S26_L007_R2.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R2_001.fastq.gz 4026831718 FASTQ S26_L007_R2 unaligned CPTAC3 e6c8a6fe-6bba-4ed2-aec5-ba81545f6a4f 0deb1741f4f9ed79b8769e961449bbc8 {"aliquot_tag": "ALQ_32c7f3fd", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.RNA-Seq.transcriptome.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.transcriptome.gdc_realn.bam 7472232767 BAM transcriptome harmonized CPTAC3 2d1ad15d-24f2-4350-8be6-13ff37e17077 d4b10e84f635fe59813f01a09338938c {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.WGS.Nbc C3L-06981 AML WGS buccal_normal CPT0403380001 CPT0403380001.WholeGenome.RP-2158.bam 51774027262 BAM aligned CPTAC3 79917886-548c-4d9f-8449-270f8fd12817 b7d1046624fc31dc6288eb6db0cbbfb7 {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06981.WGS.Nbc.hg38 C3L-06981 AML WGS buccal_normal CPT0403380001 4c79c53a-2718-4547-a290-048841fd0614_wgs_gdc_realn.bam 149538484177 BAM harmonized CPTAC3 7ab67fa3-1ce9-4d82-920c-c2e87528b007 b6996b4a4186a97c835ac7cb66e9349d {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06981.WGS.Tpb C3L-06981 AML WGS tumor_peripheral_blood CPT0404530002 CPT0404530002.WholeGenome.RP-2158.bam 46027939419 BAM aligned CPTAC3 28cda7b6-c518-491a-92f7-18a537a4d526 a4a5145b96f9b69c4bf48657bcb50891 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.WGS.Tpb.hg38 C3L-06981 AML WGS tumor_peripheral_blood CPT0404530002 8f00074a-8287-4c6c-8cff-42c27aac2504_wgs_gdc_realn.bam 135833195776 BAM harmonized CPTAC3 9ec0d8c2-3a7d-4579-b850-91811dc93dfd 25d76e9b674715af46ac5de11b2c5495 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.WXS.Nbc C3L-06981 AML WXS buccal_normal CPT0403380001 CPT0403380001.WholeExome.RP-1303.bam 31985634267 BAM aligned CPTAC3 147420c9-e671-4284-b55c-c213ff21007f c3516fe041974a47838b41fccf8e2572 {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06981.WXS.Nbc.hg38 C3L-06981 AML WXS buccal_normal CPT0403380001 4c79c53a-2718-4547-a290-048841fd0614_wxs_gdc_realn.bam 43986216038 BAM harmonized CPTAC3 77f8c27e-925e-41f1-b90f-d9045b0e62ff 6962e08de759e39fbbfd7882afe5a2c6 {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06981.WXS.Tpb C3L-06981 AML WXS tumor_peripheral_blood CPT0404530002 CPT0404530002.WholeExome.RP-1303.bam 30729052532 BAM aligned CPTAC3 c9a78684-4889-4706-ae5e-66988e0c3ae7 f44c041e429f0a77405b890f1e3ffa6a {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06981.WXS.Tpb.hg38 C3L-06981 AML WXS tumor_peripheral_blood CPT0404530002 8f00074a-8287-4c6c-8cff-42c27aac2504_wxs_gdc_realn.bam 43056405894 BAM harmonized CPTAC3 98fcca5b-037d-4c84-b645-694cb68bf00b 7339b81a2694f78eb99d91732ea27c74 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.MethArray.Green.Tpb C3L-06982 AML Methylation_Array tumor_peripheral_blood CPT0404410002 205707890143_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 34111be2-10dc-4704-9ae0-2fcebcc99590 a0dfd8f2007010962557b07cb69a7f2b {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.MethArray.Red.Tpb C3L-06982 AML Methylation_Array tumor_peripheral_blood CPT0404410002 205707890143_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 470adee3-db3c-4ae5-b1b7-5d8e1dc9a29a 79d3da44d194100cb3039d662af04da4 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.miRNA-Seq.S2_L003_R1.Tpb C3L-06982 AML miRNA-Seq tumor_peripheral_blood CPT0404420002 220505_UNC32-K00270_0319_AHMV2KBBXY_CAAAAG_S2_L003_R1_001.unaln.bam 191863960 BAM S2_L003_R1 unaligned CPTAC3 22695312-0681-458a-941d-d41503e39b0e c079bd6df4686e9c2259bd1aaa04566f {"aliquot_tag": "ALQ_be3b5a88", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.miRNA-Seq.Tpb.hg38 C3L-06982 AML miRNA-Seq tumor_peripheral_blood CPT0404420002 e26133dc-3302-47a4-8889-c68fbeb3418b_mirnaseq_gdc_realn.bam 215984390 BAM harmonized CPTAC3 013be4dc-0814-4ad1-84e9-8987b4ac5924 785c26d9edbdb6cd220e1cbad8b1a7bf {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.RNA-Seq.chimeric.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.chimeric.gdc_realn.bam 662776335 BAM chimeric harmonized CPTAC3 5fcd0d16-b92a-47f8-97b7-7257b6d4ae80 176b5616cda8ba8c67a39ca26713dafd {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.RNA-Seq.genomic.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.genomic.gdc_realn.bam 6920066479 BAM genomic harmonized CPTAC3 2e3c51fa-c9b5-4611-a5bf-ebabbc183fd7 761f17607cea9dbc955c62687e61634b {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.RNA-Seq.S23_L006_R1.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R1_001.fastq.gz 3474697330 FASTQ S23_L006_R1 unaligned CPTAC3 da3e229b-d868-4f5f-b075-be1171998087 915e62f549c55f9270f57ec862d913f3 {"aliquot_tag": "ALQ_be3b5a88", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.RNA-Seq.S23_L006_R2.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R2_001.fastq.gz 3682404957 FASTQ S23_L006_R2 unaligned CPTAC3 29246746-6940-47e6-b599-3f13ef906ad9 159a59128cf9c0e5c9001a04f23b32a0 {"aliquot_tag": "ALQ_be3b5a88", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.RNA-Seq.transcriptome.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.transcriptome.gdc_realn.bam 7270094702 BAM transcriptome harmonized CPTAC3 149e633c-0976-40b5-8488-8d382183f5bd a6555fcf5a31f7164e82cd7f11f7e408 {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.WGS.Nbc C3L-06982 AML WGS buccal_normal CPT0403350001 CPT0403350001.WholeGenome.RP-2158.bam 46684314458 BAM aligned CPTAC3 f49e23a8-9b21-4874-b42e-3f3bcbf308de b5918769c1d35324a1512f445c20ce44 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06982.WGS.Nbc.hg38 C3L-06982 AML WGS buccal_normal CPT0403350001 121b27dd-434f-47df-9e3e-e161c746cc01_wgs_gdc_realn.bam 136049604152 BAM harmonized CPTAC3 7f6aee43-68f8-4ddb-aded-5a52920ee9d4 0ff3cfeb93139a0d8d19bbc51bed9f16 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06982.WGS.Tpb C3L-06982 AML WGS tumor_peripheral_blood CPT0404410002 CPT0404410002.WholeGenome.RP-2158.bam 50422689910 BAM aligned CPTAC3 213f491e-94df-46a7-bffb-f949354da880 34f1113140fc37ba83e32d6ca15257f5 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.WGS.Tpb.hg38 C3L-06982 AML WGS tumor_peripheral_blood CPT0404410002 7ef5b7fc-04af-418d-9164-eceda84feba7_wgs_gdc_realn.bam 151091836312 BAM harmonized CPTAC3 1bf7909e-23fb-418e-b3a8-957be0b608ba d0aacf2a8e42e37e7bcee2982afb095c {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.WXS.Nbc C3L-06982 AML WXS buccal_normal CPT0403350001 CPT0403350001.WholeExome.RP-1303.bam 23770460733 BAM aligned CPTAC3 b1c89d93-d795-40cf-ae61-b2371e550731 bd27425af93f531a377c74e97d1ac3c4 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06982.WXS.Nbc.hg38 C3L-06982 AML WXS buccal_normal CPT0403350001 121b27dd-434f-47df-9e3e-e161c746cc01_wxs_gdc_realn.bam 32601152333 BAM harmonized CPTAC3 1b3e1f0d-f82b-40b7-a91f-cf1a46376849 afc5d58ed88c35c4aca24049ecf30f29 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06982.WXS.Tpb C3L-06982 AML WXS tumor_peripheral_blood CPT0404410002 CPT0404410002.WholeExome.RP-1303.bam 29613990295 BAM aligned CPTAC3 45de0859-9f0c-4fc6-abf4-82013e4ed41a 062ce6c8d9a6a91cb6803633c339faa1 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06982.WXS.Tpb.hg38 C3L-06982 AML WXS tumor_peripheral_blood CPT0404410002 7ef5b7fc-04af-418d-9164-eceda84feba7_wxs_gdc_realn.bam 41263998537 BAM harmonized CPTAC3 dde4d746-46a9-41bd-a9df-9e77ce0a2f49 117a34b0c1c8a3ba4453d069956d1bb2 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.MethArray.Green.Tpb C3L-06983 AML Methylation_Array tumor_peripheral_blood CPT0408640002 205987770157_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 60a67d40-e23e-4b1c-9bb4-c9aedd0fd6a1 dffc563a258aef5a08282112c4b1e0b5 {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.MethArray.Red.Tpb C3L-06983 AML Methylation_Array tumor_peripheral_blood CPT0408640002 205987770157_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 14d39412-7c6b-4207-903d-090327d3a5f1 e521690f539c04475d55f4734b1fcb7c {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.miRNA-Seq.S5_L003_R1.Tpb C3L-06983 AML miRNA-Seq tumor_peripheral_blood CPT0408650002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGGCG_S5_L003_R1_001.unaln.bam 263936005 BAM S5_L003_R1 unaligned CPTAC3 73b39b1a-caa4-4477-9e18-8e7efa093861 9db8eebbc5f91be46ff8eb8db23c4445 {"aliquot_tag": "ALQ_86734de7", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.miRNA-Seq.Tpb.hg38 C3L-06983 AML miRNA-Seq tumor_peripheral_blood CPT0408650002 6c55e645-f645-4514-bd0d-a47e4022b00f_mirnaseq_gdc_realn.bam 289906526 BAM harmonized CPTAC3 a8258068-d94b-4eed-bc2b-43677e8bf342 a1186bbb5cfa49267712919250fc742e {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.RNA-Seq.chimeric.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.chimeric.gdc_realn.bam 512264858 BAM chimeric harmonized CPTAC3 5e256964-5c81-4af4-82af-d8221ffec33c b10acab1df8e133bd9b31a6f87f8436c {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.RNA-Seq.genomic.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.genomic.gdc_realn.bam 7179916641 BAM genomic harmonized CPTAC3 b5fca9d7-8f46-4703-963d-88fe9f1cd1a1 b8e8831863dd6855852e561249db4928 {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.RNA-Seq.S25_L007_R1.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 3740492542 FASTQ S25_L007_R1 unaligned CPTAC3 26518143-efc1-4a56-aa1e-c242a0f31641 1906e395a4a1964bf8ec45440083ebc2 {"aliquot_tag": "ALQ_86734de7", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.RNA-Seq.S25_L007_R2.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 3943177791 FASTQ S25_L007_R2 unaligned CPTAC3 4642bc52-9725-4985-98d7-97a3c9ba89f5 7f0e78b662597649016957053fb5ac83 {"aliquot_tag": "ALQ_86734de7", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.RNA-Seq.transcriptome.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.transcriptome.gdc_realn.bam 8323069052 BAM transcriptome harmonized CPTAC3 c64f2ff7-bdd1-4a06-98ef-45db09c9fe24 2037822cd3f00c628b215ac5ceaa11a0 {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.WGS.Nbc C3L-06983 AML WGS buccal_normal CPT0408610001 CPT0408610001.WholeGenome.RP-2158.bam 58946812018 BAM aligned CPTAC3 4a5647d3-8d56-4b44-81ae-0aeb356ec70a 6249e7c5e87d4ac3372e628f8c639f95 {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06983.WGS.Nbc.hg38 C3L-06983 AML WGS buccal_normal CPT0408610001 64b0012c-ff3b-4930-879c-11ad70615533_wgs_gdc_realn.bam 172535418672 BAM harmonized CPTAC3 69d8818f-a69e-4afa-a106-5bcbeece0a49 d31db3447fcf4c04a2aa6dd14b60b93e {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06983.WGS.Tpb C3L-06983 AML WGS tumor_peripheral_blood CPT0408640002 CPT0408640002.WholeGenome.RP-2158.bam 43651351728 BAM aligned CPTAC3 4cbc9bb3-6efd-4e41-a00d-9dc5bd26cdf9 c1fdb735c7d381e2e6022ea559afe100 {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.WGS.Tpb.hg38 C3L-06983 AML WGS tumor_peripheral_blood CPT0408640002 e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wgs_gdc_realn.bam 132091769285 BAM harmonized CPTAC3 1e2921db-5243-4ee6-8d9b-07ecef59fa12 24d7bee8a728a3cc667ad4afa10ae3b7 {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.WXS.Nbc C3L-06983 AML WXS buccal_normal CPT0408610001 CPT0408610001.WholeExome.RP-1303.bam 25711691906 BAM aligned CPTAC3 87f37cd9-f411-405b-a754-45b1d785ff5b 9a1b7b543a43a13f4ec61b9d0fafa140 {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06983.WXS.Nbc.hg38 C3L-06983 AML WXS buccal_normal CPT0408610001 64b0012c-ff3b-4930-879c-11ad70615533_wxs_gdc_realn.bam 37245222092 BAM harmonized CPTAC3 65286f62-a5d2-444d-b95f-d650dc8a2f38 ef4737c88010d6d77a64c737ff0925e0 {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06983.WXS.Tpb C3L-06983 AML WXS tumor_peripheral_blood CPT0408640002 CPT0408640002.WholeExome.RP-1303.bam 24226740827 BAM aligned CPTAC3 79ed1bca-c9a3-4aad-800f-16033f63b652 92ce5fcd6c3b11b28e378e67e22055ad {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06983.WXS.Tpb.hg38 C3L-06983 AML WXS tumor_peripheral_blood CPT0408640002 e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wxs_gdc_realn.bam 33458404342 BAM harmonized CPTAC3 468b389b-7174-45a6-b3ce-2db7d0c4eca8 f35ba090083c779adcec20f4cfa64b3c {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.MethArray.Green.Tpb C3L-06984 AML Methylation_Array tumor_peripheral_blood CPT0408880002 205707890036_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 fdf41040-4ef5-4b00-9682-29b85832335c 5efeb9aca6ded1cbca814b07f2e1bc5d {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.MethArray.Red.Tpb C3L-06984 AML Methylation_Array tumor_peripheral_blood CPT0408880002 205707890036_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 731b6909-36eb-421b-8e1f-02905bfd4152 84ce281b8b85c8b98ac0c7431dc51326 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.miRNA-Seq.S4_L003_R1.Tpb C3L-06984 AML miRNA-Seq tumor_peripheral_blood CPT0408890002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACTCA_S4_L003_R1_001.unaln.bam 261397418 BAM S4_L003_R1 unaligned CPTAC3 01e324ab-cb07-4257-8a74-d0758252f222 05caa0e68becc8be961413f8bf483635 {"aliquot_tag": "ALQ_7989c196", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.miRNA-Seq.Tpb.hg38 C3L-06984 AML miRNA-Seq tumor_peripheral_blood CPT0408890002 3dfd641e-04ef-40fa-b16d-cdf8326f1aea_mirnaseq_gdc_realn.bam 293238380 BAM harmonized CPTAC3 eb2caf85-55bb-4e3f-ad3e-64e02faa0bbf 2ce269753265a719623d5c0dc6370588 {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.RNA-Seq.chimeric.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.chimeric.gdc_realn.bam 660918515 BAM chimeric harmonized CPTAC3 4ed47b0a-954e-43bb-b909-f6bdb58c2fe7 bc669a727d3c46bcd4cf9c608fad3143 {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.RNA-Seq.genomic.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.genomic.gdc_realn.bam 7941234065 BAM genomic harmonized CPTAC3 eaad2437-3ea7-4fb8-9e41-c96bf66dbaa4 78ecf1022c8280eddfef974791b258e6 {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.RNA-Seq.S27_L007_R1.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R1_001.fastq.gz 3897342018 FASTQ S27_L007_R1 unaligned CPTAC3 c9020348-4ac7-45b2-8b26-0f3600eea6be c093b306674e0a1d60d94ed690b33c95 {"aliquot_tag": "ALQ_7989c196", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.RNA-Seq.S27_L007_R2.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R2_001.fastq.gz 4137799210 FASTQ S27_L007_R2 unaligned CPTAC3 d80c3794-a9dc-4b1b-8acc-12c57ffbe287 6e16f41969771d4ae81ee98cf509ed4f {"aliquot_tag": "ALQ_7989c196", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.RNA-Seq.transcriptome.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.transcriptome.gdc_realn.bam 8485677822 BAM transcriptome harmonized CPTAC3 99fcf827-b565-44ce-9eb3-944cc3dd7cc1 d97066ca73e05f7400ca7c8b7ba8428c {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.WGS.Nbc C3L-06984 AML WGS buccal_normal CPT0408850001 CPT0408850001.WholeGenome.RP-2158.bam 54868221872 BAM aligned CPTAC3 32329ee0-f040-4c1b-87c1-4899f4f455ba 26afa3791dd669298295c1c08b33c17e {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06984.WGS.Nbc.hg38 C3L-06984 AML WGS buccal_normal CPT0408850001 b0c55a80-01d8-42eb-8047-5299de48ffc8_wgs_gdc_realn.bam 479825047073 BAM harmonized CPTAC3 65b123d9-9d59-4697-82bf-9db318649bb3 d73a5a94482c3d808dd68bad4809547a {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06984.WGS.Tpb C3L-06984 AML WGS tumor_peripheral_blood CPT0408880002 CPT0408880002.WholeGenome.RP-2158.bam 51255855433 BAM aligned CPTAC3 9a2129d2-dd45-42e9-afc1-c2f76f47948d 95281e57ff87149adc9c7bd4496c2a11 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.WGS.Tpb.hg38 C3L-06984 AML WGS tumor_peripheral_blood CPT0408880002 a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wgs_gdc_realn.bam 155235972975 BAM harmonized CPTAC3 dc89ef04-c297-4432-a134-46486e9e8dcb 1297c26a3c9507d48428d346696a2665 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.WXS.Nbc C3L-06984 AML WXS buccal_normal CPT0408850001 CPT0408850001.WholeExome.RP-1303.bam 16902132775 BAM aligned CPTAC3 fa5418a5-98fe-4ca8-bb49-bcdd0399d6e7 cdf9700e071f15e086d10001506975fe {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06984.WXS.Nbc.hg38 C3L-06984 AML WXS buccal_normal CPT0408850001 b0c55a80-01d8-42eb-8047-5299de48ffc8_wxs_gdc_realn.bam 23341344380 BAM harmonized CPTAC3 7810bf2c-1091-45bc-b9e5-9814def4ef7f 7e1980027802e6ebab9f4a915863d815 {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal"} -C3L-06984.WXS.Tpb C3L-06984 AML WXS tumor_peripheral_blood CPT0408880002 CPT0408880002.WholeExome.RP-1303.bam 19954273339 BAM aligned CPTAC3 4736dfe6-8512-4fca-97be-9a273fa9fa9c 45a0432baad43ef032d1c06f4836cfe1 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-06984.WXS.Tpb.hg38 C3L-06984 AML WXS tumor_peripheral_blood CPT0408880002 a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wxs_gdc_realn.bam 27834661525 BAM harmonized CPTAC3 699aab96-8cd5-480d-8c76-554d4d1a1ba8 ff2d0f6ae0d0864cbdb4024d97b1b43f {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07012.MethArray.Green.Tbm C3L-07012 AML Methylation_Array tumor_bone_marrow CPT0423540002 205987780101_R02C01_Grn.idat 13677888 IDAT Green NA CPTAC3 d95dfeff-b014-4513-b0b8-193e00312f1b 84271e6e832adff592abd6b9c2188c3a {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.MethArray.Red.Tbm C3L-07012 AML Methylation_Array tumor_bone_marrow CPT0423540002 205987780101_R02C01_Red.idat 13677888 IDAT Red NA CPTAC3 f72d2e9d-be02-4b64-a9d0-37e60c859965 8d024f0dab3da114869404cfdd28822c {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.miRNA-Seq.S39_L002_R1.Tbm C3L-07012 AML miRNA-Seq tumor_bone_marrow CPT0423550002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTGAAA_S39_L002_R1_001.unaln.bam 235075833 BAM S39_L002_R1 unaligned CPTAC3 a4a4d331-60d0-4739-9e3d-6146c3fe2484 e4fc7081089f5d13ce52a52fc8f02b37 {"aliquot_tag": "ALQ_40c56cce", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.miRNA-Seq.Tbm.hg38 C3L-07012 AML miRNA-Seq tumor_bone_marrow CPT0423550002 66e4b536-8c49-4045-af56-5d7fd1e686c6_mirnaseq_gdc_realn.bam 262654660 BAM harmonized CPTAC3 f2ec02b1-c561-4b1f-a5fb-2411dcf4f582 2ce644cf0fb8799b09f34159fb0dd376 {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.RNA-Seq.chimeric.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.chimeric.gdc_realn.bam 581682620 BAM chimeric harmonized CPTAC3 835b59f6-16e4-4694-9efe-b613382b72b9 3265d81b206d1701b5acb0431650df13 {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.RNA-Seq.genomic.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.genomic.gdc_realn.bam 6864057625 BAM genomic harmonized CPTAC3 f3e8149a-728b-4002-aacb-f008d74e1e12 11fd55b615621f3583c0de42404981ee {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.RNA-Seq.S16_L004_R1.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R1_001.fastq.gz 3467313065 FASTQ S16_L004_R1 unaligned CPTAC3 bed0b6b6-1024-4b88-9ccd-f4702700ff3f 262af42889c5c7338ef3ad2ced21910d {"aliquot_tag": "ALQ_40c56cce", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.RNA-Seq.S16_L004_R2.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R2_001.fastq.gz 3692173513 FASTQ S16_L004_R2 unaligned CPTAC3 7b57f8ce-1e4c-4f0d-9d81-370bb7a90774 6efeb34cad24bba2354c6156b49998bf {"aliquot_tag": "ALQ_40c56cce", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.RNA-Seq.transcriptome.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.transcriptome.gdc_realn.bam 7885853369 BAM transcriptome harmonized CPTAC3 c615a597-fe45-4168-93c8-f89bba90ad81 3478d31eedd51f8428b3dcbc5927d55d {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.WGS.Tbm C3L-07012 AML WGS tumor_bone_marrow CPT0423540002 CPT0423540002.WholeGenome.RP-2158.bam 53577776151 BAM aligned CPTAC3 566f44d4-3504-485d-9299-afb0cf0dafe2 bbb11857af20d22d7fa85aa3ceda471d {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.WGS.Tbm.hg38 C3L-07012 AML WGS tumor_bone_marrow CPT0423540002 43982394-4fd8-4b39-88b0-fd5418fabda9_wgs_gdc_realn.bam 158689114737 BAM harmonized CPTAC3 9d5fa861-1cf3-4965-aacb-3ce82482133f 650e9f9324941a52c13f07ad12b7cb7d {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.WXS.Nbc C3L-07012 AML WXS buccal_normal CPT0423600001 CPT0423600001.WholeExome.RP-1303.bam 23627108151 BAM aligned CPTAC3 2ed62278-6092-40fb-805a-f47cc0be10ae 6bdc0e9645a53f520d4ca4a61b96f1ef {"aliquot_tag": "ALQ_97b8c0aa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07012.WXS.Nbc.hg38 C3L-07012 AML WXS buccal_normal CPT0423600001 ec411e25-2a11-4cc9-aaea-806a5e34a08d_wxs_gdc_realn.bam 31960837320 BAM harmonized CPTAC3 64e2bdb1-f10f-420d-a03e-60e7d01af376 c8d08f26d7f1694118040e0aa3f142d4 {"aliquot_tag": "ALQ_97b8c0aa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07012.WXS.Tbm C3L-07012 AML WXS tumor_bone_marrow CPT0423540002 CPT0423540002.WholeExome.RP-1303.bam 30176565344 BAM aligned CPTAC3 12295d85-7214-4527-bf42-75fd211a8ca0 a842fa8dc630cb5dcc806920a2e64a92 {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07012.WXS.Tbm.hg38 C3L-07012 AML WXS tumor_bone_marrow CPT0423540002 43982394-4fd8-4b39-88b0-fd5418fabda9_wxs_gdc_realn.bam 42024870132 BAM harmonized CPTAC3 6c2f3c3e-b9b1-4215-bece-7fbfaa266226 5105ab890684e1a94e5fed3d5ce9868f {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.MethArray.Green.Tbm C3L-07013 AML Methylation_Array tumor_bone_marrow CPT0423640002 205987780101_R06C01_Grn.idat 13677888 IDAT Green NA CPTAC3 1b41e550-2296-40f0-baa3-646304b71e8e ad521768d7541689ccc9bfb71654a34f {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.MethArray.Red.Tbm C3L-07013 AML Methylation_Array tumor_bone_marrow CPT0423640002 205987780101_R06C01_Red.idat 13677888 IDAT Red NA CPTAC3 d1850a58-d8d6-4985-b9db-c7b5fcfe95c3 eda100a14da59279e61e8e2f2d90896e {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.miRNA-Seq.S4_L003_R1.Tbm C3L-07013 AML miRNA-Seq tumor_bone_marrow CPT0423650002 220505_UNC32-K00270_0319_AHMV2KBBXY_CCAACA_S4_L003_R1_001.unaln.bam 170562530 BAM S4_L003_R1 unaligned CPTAC3 f49a134c-f0f2-4b94-b21a-78747ab82b9b 9ce1e07e2e4486cd6a56cd321024acad {"aliquot_tag": "ALQ_c6511e60", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.miRNA-Seq.Tbm.hg38 C3L-07013 AML miRNA-Seq tumor_bone_marrow CPT0423650002 c86fd7ee-7856-4db7-9a28-44c2e7675f20_mirnaseq_gdc_realn.bam 192126017 BAM harmonized CPTAC3 ce188040-0ad7-4437-9ee9-6372efa2d233 b6a430ccd44d1a7ae06a90597d30be06 {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.RNA-Seq.chimeric.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.chimeric.gdc_realn.bam 74559440 BAM chimeric harmonized CPTAC3 6506be33-e425-4684-9851-eb0f0f9a65ae a6a4e699b4069978eaee57ccc5865a8c {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.RNA-Seq.genomic.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.genomic.gdc_realn.bam 9223432526 BAM genomic harmonized CPTAC3 70d345a0-0a2e-4c75-9920-14c36791d713 6080eaf2f266e2cf64430bf208faf78a {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.RNA-Seq.S14_L004_R1.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3609610481 FASTQ S14_L004_R1 unaligned CPTAC3 17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3 edcba2beb1192a30c44f5a3a5a3d81cb {"aliquot_tag": "ALQ_c6511e60", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.RNA-Seq.S14_L004_R2.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4145611122 FASTQ S14_L004_R2 unaligned CPTAC3 1023c6f2-892a-4949-82ec-e92440e8f394 88e6d5177d9b119bd152105d68d25722 {"aliquot_tag": "ALQ_c6511e60", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.RNA-Seq.transcriptome.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.transcriptome.gdc_realn.bam 10802815241 BAM transcriptome harmonized CPTAC3 f3607b78-b2dd-467d-9b56-d496e3a12b92 71eac3593fd9e24cc0228b6128aa2a52 {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.WGS.Nbc C3L-07013 AML WGS buccal_normal CPT0423740001 CPT0423740001.WholeGenome.RP-2158.bam 53990682216 BAM aligned CPTAC3 f1ccbcd9-f455-42f6-9717-724a3e1fd937 50c8d8976215615346f4259b1c6361ba {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07013.WGS.Nbc.hg38 C3L-07013 AML WGS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wgs_gdc_realn.bam 172603541079 BAM harmonized CPTAC3 998c64c5-cac5-473d-a385-8c99522cf665 7dc465c3ffc3c9f50e73aad70e87b546 {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07013.WGS.Tbm C3L-07013 AML WGS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeGenome.RP-2158.bam 44356654820 BAM aligned CPTAC3 2efefab3-c73f-4b57-bfa5-4826a4846922 2230a484e4032667baca986fcb00465b {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.WGS.Tbm.hg38 C3L-07013 AML WGS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wgs_gdc_realn.bam 403743062329 BAM harmonized CPTAC3 56965835-c74a-4372-9f42-4bb4fe46ae3a b11d9396fdbbcfa9baa9d1fff92909f8 {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.WXS.Nbc C3L-07013 AML WXS buccal_normal CPT0423740001 CPT0423740001.WholeExome.RP-1303.bam 33334855248 BAM aligned CPTAC3 82083bb0-d7e4-44ff-bf43-aa968b0c36d2 ae49fcf82f84ca04074247bc07b00913 {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07013.WXS.Nbc.hg38 C3L-07013 AML WXS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wxs_gdc_realn.bam 44977778426 BAM harmonized CPTAC3 6d83953f-9d59-45fd-9f1c-48d917f0efe9 b231d52d4e35190e27c55c85912f43b0 {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07013.WXS.Tbm C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeExome.RP-1303.bam 25242973164 BAM aligned CPTAC3 796241ec-a38a-4028-b621-343be77994c4 b10f96d90358bc9a98403a9f5b692bb0 {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07013.WXS.Tbm.hg38 C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wxs_gdc_realn.bam 35353671823 BAM harmonized CPTAC3 77b57be8-82b9-4fbd-94cf-cdb1624b219c 8fdf03515b5336f304ca3f5ea4eaa54a {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07032.RNA-Seq.chimeric.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.chimeric.gdc_realn.bam 63081382 BAM chimeric harmonized CPTAC3 85dfb5f6-65c3-49d5-bb1c-ebfe0dd3809d 18939ebe653af2d687acbe8238c6597f {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07032.RNA-Seq.genomic.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.genomic.gdc_realn.bam 9498612665 BAM genomic harmonized CPTAC3 f465ba1c-3234-48e7-91fd-fc11a79416d2 204a166fec8c019916e24e574a4cc2e4 {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07032.RNA-Seq.S5_L002_R1.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ S5_L002_R1 unaligned CPTAC3 88ba9750-4977-49cb-9058-c68e1b1b7570 d258562bc158932ff5f7cc321078289d {"aliquot_tag": "ALQ_828862eb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07032.RNA-Seq.S5_L002_R2.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R2_001.fastq.gz 4600968470 FASTQ S5_L002_R2 unaligned CPTAC3 f37f4fc1-e819-471b-8ad1-0bf07194d51f 4540caa5c0093d8f223c2241ff8d46ed {"aliquot_tag": "ALQ_828862eb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07032.RNA-Seq.transcriptome.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.transcriptome.gdc_realn.bam 12676208890 BAM transcriptome harmonized CPTAC3 5adecd04-1737-49e0-bfec-001b3221dbbd d27822310ed1c5ba531fd0c1c7933b5f {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07033.RNA-Seq.chimeric.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.chimeric.gdc_realn.bam 95552753 BAM chimeric harmonized CPTAC3 5dfc4912-c6c1-4f1c-b736-dc0aad9b6c77 aed82059a6cc51414d26831b52478177 {"aliquot_tag": "ALQ_d8f53a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07033.RNA-Seq.genomic.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.genomic.gdc_realn.bam 10283639041 BAM genomic harmonized CPTAC3 611abacc-4edf-407e-994a-d80476eb9e3a 04ea389f63a0a0ba1c88ca0f5c02adfc {"aliquot_tag": "ALQ_d8f53a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07033.RNA-Seq.S7_L002_R1.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R1_001.fastq.gz 4531104702 FASTQ S7_L002_R1 unaligned CPTAC3 37537c02-5de7-4494-ae9e-e4e717f391fb 6fac3f865d8c6f5c48359817292329fa {"aliquot_tag": "ALQ_d8f53a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07033.RNA-Seq.S7_L002_R2.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R2_001.fastq.gz 5091753246 FASTQ S7_L002_R2 unaligned CPTAC3 e074f8ea-87fc-499f-b028-738c12b62cbc 340a21e302db95bcc30b88ce28f9ea4e {"aliquot_tag": "ALQ_d8f53a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07033.RNA-Seq.transcriptome.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.transcriptome.gdc_realn.bam 11228146088 BAM transcriptome harmonized CPTAC3 8c854815-b007-4da4-9157-0e96f03b1376 83a05ef7e8080220373a783529e508d4 {"aliquot_tag": "ALQ_d8f53a", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07034.RNA-Seq.chimeric.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.chimeric.gdc_realn.bam 50215892 BAM chimeric harmonized CPTAC3 c2ec24f2-aa4c-42c3-a634-e99ecfc6216b 1acac3b1737ae0b27333877dc1c92444 {"aliquot_tag": "ALQ_865e76fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07034.RNA-Seq.genomic.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.genomic.gdc_realn.bam 7964760572 BAM genomic harmonized CPTAC3 225b0e81-88c7-4d84-8459-bd3b0dbc76be e00eb05264bc097015b4454743afa272 {"aliquot_tag": "ALQ_865e76fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07034.RNA-Seq.S1_L001_R1.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3190444841 FASTQ S1_L001_R1 unaligned CPTAC3 156bec6c-7178-4b00-8d6b-cb5bae408463 8b459572f95ede52eb1525cb4d56ea45 {"aliquot_tag": "ALQ_865e76fe", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07034.RNA-Seq.S1_L001_R2.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 3715062124 FASTQ S1_L001_R2 unaligned CPTAC3 d9794500-bac2-45f1-a463-d7e90fa594ab 522f76dcca840f1b285f8d49645ce33c {"aliquot_tag": "ALQ_865e76fe", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07034.RNA-Seq.transcriptome.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.transcriptome.gdc_realn.bam 8924869865 BAM transcriptome harmonized CPTAC3 bbbe5f20-a341-4481-b1c1-94fc13e8cd20 b786fefbbef02f733fc5b56a41eddbb0 {"aliquot_tag": "ALQ_865e76fe", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07035.RNA-Seq.chimeric.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.chimeric.gdc_realn.bam 65295916 BAM chimeric harmonized CPTAC3 2a0a3519-6ce3-41b1-9e6f-df921c680831 56affd8d1b6b21d3bc600cbf861f2dff {"aliquot_tag": "ALQ_347eaaee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07035.RNA-Seq.genomic.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.genomic.gdc_realn.bam 9866835080 BAM genomic harmonized CPTAC3 ea3f309c-9a48-4e2a-9f23-45aafff8f38b d3a4af107c34ca26100b93812b2a7ef0 {"aliquot_tag": "ALQ_347eaaee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07035.RNA-Seq.S3_L001_R1.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4262833306 FASTQ S3_L001_R1 unaligned CPTAC3 3a11d2c4-3f6d-4d93-9f48-485afc4059bb 4d52ae28806cb5f03d9a3fff565bda74 {"aliquot_tag": "ALQ_347eaaee", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07035.RNA-Seq.S3_L001_R2.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 4815441455 FASTQ S3_L001_R2 unaligned CPTAC3 697dbb59-0c83-4289-be41-f3804a391a4d a88b3aa93113bbb9c4a4cd77fb519508 {"aliquot_tag": "ALQ_347eaaee", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07035.RNA-Seq.transcriptome.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.transcriptome.gdc_realn.bam 11670361047 BAM transcriptome harmonized CPTAC3 d977e1d8-59e6-44f9-87c8-9ea9e6bc1c98 30356a19b9cb3290619d31d637029a18 {"aliquot_tag": "ALQ_347eaaee", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07036.RNA-Seq.chimeric.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.chimeric.gdc_realn.bam 38980865 BAM chimeric harmonized CPTAC3 cac7da9b-e721-4dc1-8a2c-95017ff3f6c3 d7640fff1a55d6d3d7d95c94e1e94401 {"aliquot_tag": "ALQ_ccee6e5f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07036.RNA-Seq.genomic.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.genomic.gdc_realn.bam 7428085529 BAM genomic harmonized CPTAC3 9629a2dd-2a21-4740-a5d5-e231a287a83b 11d29d29987b2f94f4bf8358b8bb6116 {"aliquot_tag": "ALQ_ccee6e5f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07036.RNA-Seq.S4_L001_R1.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R1_001.fastq.gz 2990375045 FASTQ S4_L001_R1 unaligned CPTAC3 f9245412-081c-4289-99fb-475fac2473ee 77bc0dc4f13e87f98f147db6e8484538 {"aliquot_tag": "ALQ_ccee6e5f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07036.RNA-Seq.S4_L001_R2.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R2_001.fastq.gz 3441842587 FASTQ S4_L001_R2 unaligned CPTAC3 55668996-4f4e-4508-9152-634da507607d 8fe56d9716992ee2594dcac204c8dcb0 {"aliquot_tag": "ALQ_ccee6e5f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07036.RNA-Seq.transcriptome.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.transcriptome.gdc_realn.bam 8898514803 BAM transcriptome harmonized CPTAC3 c8706639-7226-402e-918e-949c0d9e2da5 f3ee1db1d8327e8c61add50f73eaf3ee {"aliquot_tag": "ALQ_ccee6e5f", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07037.RNA-Seq.chimeric.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.chimeric.gdc_realn.bam 148479090 BAM chimeric harmonized CPTAC3 09881fd9-6ea8-4750-9c99-67c1d52bdd55 c4eafc1f8ff6634c643af78ffa6dbbfc {"aliquot_tag": "ALQ_aa2df8b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07037.RNA-Seq.genomic.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.genomic.gdc_realn.bam 9670052249 BAM genomic harmonized CPTAC3 172bbb8c-f105-46ff-80fe-15f78b102bd6 d51e191d781e439fbee8d95d6b2f1f92 {"aliquot_tag": "ALQ_aa2df8b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07037.RNA-Seq.S2_L001_R1.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ S2_L001_R1 unaligned CPTAC3 3399328b-16f5-4c7a-8e1f-338368645ed8 3619b3194ff2aa47564da23b1342f5af {"aliquot_tag": "ALQ_aa2df8b", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07037.RNA-Seq.S2_L001_R2.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ S2_L001_R2 unaligned CPTAC3 db70a6b8-672d-4a13-bd16-bd52d87843fe 5260fcae215a5f3e074db2f6ad879f33 {"aliquot_tag": "ALQ_aa2df8b", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07037.RNA-Seq.transcriptome.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.transcriptome.gdc_realn.bam 10569505762 BAM transcriptome harmonized CPTAC3 291861f3-2e47-4cac-a807-589bdf58c20c ff694eda7618b8f8c68456fdb8bf244c {"aliquot_tag": "ALQ_aa2df8b", "gdc_sample_type": "Solid Tissue Normal"} -C3L-07202.MethArray.Green.T C3L-07202 GBM Methylation_Array tumor CPT0407650010 205555390174_R06C01_Grn.idat 13677965 IDAT Green NA CPTAC3 222960f7-20b1-4046-b15e-2511a9aaf42f 851fa7f6e1508cf64bb570adc2048557 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor"} -C3L-07202.MethArray.Red.T C3L-07202 GBM Methylation_Array tumor CPT0407650010 205555390174_R06C01_Red.idat 13677965 IDAT Red NA CPTAC3 ceb8a577-4b0b-47d0-a640-a597c25da03b acc01d2fb102ab19fc4536a3acba6e8d {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor"} -C3L-07202.miRNA-Seq.S5_L005_R1.T C3L-07202 GBM miRNA-Seq tumor CPT0407650007 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L005_R1_001.unaln.bam 142731958 BAM S5_L005_R1 unaligned CPTAC3 bafbc425-2aa6-4d3b-9147-84e2537a3d4a e338bb6ee677f9faa5edc4db5b6920cc {"aliquot_tag": "ALQ_51c981", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07202.miRNA-Seq.T.hg38 C3L-07202 GBM miRNA-Seq tumor CPT0407650007 d7c4d648-fff8-43dd-97ff-71537ed2d14c_mirnaseq_gdc_realn.bam 154494381 BAM harmonized CPTAC3 cfc5cc4f-de57-4f94-aad3-ac48f5b91cbb ce4f52cc408d4bf381ecf0fd005161c5 {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor"} -C3L-07202.RNA-Seq.chimeric.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.chimeric.gdc_realn.bam 114492033 BAM chimeric harmonized CPTAC3 6ddab828-389a-4df0-9976-fadf88d02c50 07663b3957a711be254fb646f72f2cfa {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor"} -C3L-07202.RNA-Seq.genomic.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.genomic.gdc_realn.bam 10126285337 BAM genomic harmonized CPTAC3 f419ef07-3477-4e9c-8703-cdf75eabe2d3 6aa3288b96ce7998bc609795b81700a2 {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor"} -C3L-07202.RNA-Seq.S76_L008_R1.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R1_001.fastq.gz 4673354416 FASTQ S76_L008_R1 unaligned CPTAC3 0d2a4b38-4741-48ac-bd06-58e5a7397594 e82c52d02676bcbb56a568fffa3f772f {"aliquot_tag": "ALQ_51c981", "sample": "S76", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07202.RNA-Seq.S76_L008_R2.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R2_001.fastq.gz 5307823033 FASTQ S76_L008_R2 unaligned CPTAC3 9e0f8f05-b887-4c26-b196-f8d137d04b38 5d1fa7779b06858b0283cd8da4719654 {"aliquot_tag": "ALQ_51c981", "sample": "S76", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-07202.RNA-Seq.transcriptome.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.transcriptome.gdc_realn.bam 7634470702 BAM transcriptome harmonized CPTAC3 54a12723-d77b-45ee-8cfa-09701fa5727e 2bc72732ae62f3b41bd3fdb70bb46560 {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor"} -C3L-07202.WGS.N C3L-07202 GBM WGS blood_normal CPT0408730002 CPT0408730002.WholeGenome.RP-2158.bam 23879461295 BAM aligned CPTAC3 be5343f5-50ec-4556-826f-2f78a7c3fb88 9100f533d568e96f096d78f6f7f18fb9 {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal"} -C3L-07202.WGS.N.hg38 C3L-07202 GBM WGS blood_normal CPT0408730002 9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wgs_gdc_realn.bam 68922636729 BAM harmonized CPTAC3 e8e293fc-c8ca-4cc8-809a-18ff04d36c91 df2f21b209e3f56ddf00dd90f02425ea {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal"} -C3L-07202.WGS.T C3L-07202 GBM WGS tumor CPT0407650010 CPT0407650010.WholeGenome.RP-2158.bam 22112867784 BAM aligned CPTAC3 bd7ee9e2-1221-4100-b46b-746fee3ffcc5 9c6fdcb1d1682c8b368d37b615056b62 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor"} -C3L-07202.WGS.T.hg38 C3L-07202 GBM WGS tumor CPT0407650010 ce1dba67-d732-46e3-9e72-096f6f0b75b9_wgs_gdc_realn.bam 62842632255 BAM harmonized CPTAC3 27664a4a-b413-4602-a67e-2f168c52e22a c91eaaaf08dca52d74650c405135bfd1 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor"} -C3L-07202.WXS.N C3L-07202 GBM WXS blood_normal CPT0408730002 CPT0408730002.WholeExome.RP-1303.bam 26749694695 BAM aligned CPTAC3 9cfa2645-0420-4d57-a7e6-0fba83c81c42 1d1d3b858788097bf01e13127d930116 {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal"} -C3L-07202.WXS.N.hg38 C3L-07202 GBM WXS blood_normal CPT0408730002 9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wxs_gdc_realn.bam 36976133990 BAM harmonized CPTAC3 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed f43c63d1055e4876cbf61e4b74f5109c {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal"} -C3L-07202.WXS.T C3L-07202 GBM WXS tumor CPT0407650010 CPT0407650010.WholeExome.RP-1303.bam 25141500331 BAM aligned CPTAC3 08c3554c-d4d2-4e22-a091-2a8a22a88d90 eca21478e7eed4dcfe81c924247d563f {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor"} -C3L-07202.WXS.T.hg38 C3L-07202 GBM WXS tumor CPT0407650010 ce1dba67-d732-46e3-9e72-096f6f0b75b9_wxs_gdc_realn.bam 35323200367 BAM harmonized CPTAC3 5c4c8930-d564-4e1a-97bd-5971d536af18 d33bd559600876512b74d4a51a654079 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor"} -C3L-07212.MethArray.Green.T C3L-07212 LGG Methylation_Array tumor CPT0447560012 206250290178_R01C01_Grn.idat 13677942 IDAT Green NA CPTAC3 4f08cfbd-be2d-4a50-b19b-e1b22347033d bf4dad83e8e006bbe9e2d55985973d85 {"aliquot_tag": "ALQ_2c5e0acb", "gdc_sample_type": "Primary Tumor"} -C3L-07212.MethArray.Red.T C3L-07212 LGG Methylation_Array tumor CPT0447560012 206250290178_R01C01_Red.idat 13677942 IDAT Red NA CPTAC3 8e8b37a3-d0f9-41da-a850-2baf9643d279 dc45b12943ecb40ace61cdc1f7ff1143 {"aliquot_tag": "ALQ_2c5e0acb", "gdc_sample_type": "Primary Tumor"} -C3L-07212.miRNA-Seq.S6_L003_R1.T C3L-07212 LGG miRNA-Seq tumor CPT0447560007 220505_UNC32-K00270_0319_AHMV2KBBXY_CTAGCT_S6_L003_R1_001.unaln.bam 310872045 BAM S6_L003_R1 unaligned CPTAC3 e44650c7-2e73-4786-bb16-e7a3d837fe16 06345681442ce851c00904871d0a65ba {"aliquot_tag": "ALQ_452fcf05", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07212.miRNA-Seq.T.hg38 C3L-07212 LGG miRNA-Seq tumor CPT0447560007 deca3f1a-5e78-4c28-a713-60d30337a896_mirnaseq_gdc_realn.bam 343046530 BAM harmonized CPTAC3 72a1c78c-d3bc-4888-9875-03abdddc0ea8 b908081b3c2c700bf492f17005d6ce0b {"aliquot_tag": "ALQ_452fcf05", "gdc_sample_type": "Primary Tumor"} -C3L-07212.RNA-Seq.S3_L006_R1.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R1_001.fastq.gz 2006897789 FASTQ S3_L006_R1 unaligned CPTAC3 93b39fb7-26e7-4e70-9145-726cd8868b5b eb2c1e2b53c14f292b2fc9e2dc637a97 {"aliquot_tag": "ALQ_452fcf05", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07212.RNA-Seq.S3_L006_R2.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R2_001.fastq.gz 2105896279 FASTQ S3_L006_R2 unaligned CPTAC3 ec4877da-dfc4-4a6a-ac9c-5500fa56ba2c fa90596fa5a4ff3fb26b3750a624bb09 {"aliquot_tag": "ALQ_452fcf05", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-07213.MethArray.Green.T C3L-07213 GBM Methylation_Array tumor CPT0407970010 205555390176_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ed6a2433-0756-4efa-8a10-cec2fcb27e88 6a00a334c1c3fb59edcc99068255357a {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor"} -C3L-07213.MethArray.Red.T C3L-07213 GBM Methylation_Array tumor CPT0407970010 205555390176_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 4a399bb5-ed14-4a50-818d-c651f6d48540 944f68e32368dd49aabda726d93d9349 {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor"} -C3L-07213.miRNA-Seq.S1_L005_R1.T C3L-07213 GBM miRNA-Seq tumor CPT0407970007 210702_UNC32-K00270_0289_AHKJ22BBXY_ACAGTG_S1_L005_R1_001.unaln.bam 169566636 BAM S1_L005_R1 unaligned CPTAC3 c43fded4-9ae9-4cbf-a391-af4b6106e8ba c6f3be2e9f3230493bb570c6860624da {"aliquot_tag": "ALQ_8bc72834", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07213.miRNA-Seq.T.hg38 C3L-07213 GBM miRNA-Seq tumor CPT0407970007 cda0b09b-05f5-49aa-8e3b-80f5c3aee1b3_mirnaseq_gdc_realn.bam 187401409 BAM harmonized CPTAC3 a1639b74-3562-478a-8463-6555ba8d5e03 aaf15c7b45f9df5b5104116dff8aa78e {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor"} -C3L-07213.RNA-Seq.chimeric.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.chimeric.gdc_realn.bam 240962729 BAM chimeric harmonized CPTAC3 220c39b5-995b-4c50-8931-c7ba2c067575 d5eb8c042b13e4de5459598f2d4adf0e {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor"} -C3L-07213.RNA-Seq.genomic.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.genomic.gdc_realn.bam 7216907422 BAM genomic harmonized CPTAC3 002571e9-bcdb-4e21-8cd1-674eacf7a304 5c1446684f29279eb927ac3d2842fbad {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor"} -C3L-07213.RNA-Seq.S78_L008_R1.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R1_001.fastq.gz 3214110588 FASTQ S78_L008_R1 unaligned CPTAC3 a3414943-3507-49d3-8c9f-c50c7721b209 52e32e039bd1e7d38bdf56b0caa6aba6 {"aliquot_tag": "ALQ_8bc72834", "sample": "S78", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07213.RNA-Seq.S78_L008_R2.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R2_001.fastq.gz 3605214139 FASTQ S78_L008_R2 unaligned CPTAC3 ea6ad82f-b787-4ee4-820c-f4b30dd9d61c 2ed49fc0b52d4696bd12b25b301bf532 {"aliquot_tag": "ALQ_8bc72834", "sample": "S78", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-07213.RNA-Seq.transcriptome.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.transcriptome.gdc_realn.bam 9480278292 BAM transcriptome harmonized CPTAC3 dff98336-a851-4761-96ee-eda889fc11db 85a1b5685c3fc9cd159931ff928d42b8 {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor"} -C3L-07213.WGS.N C3L-07213 GBM WGS blood_normal CPT0408780002 CPT0408780002.WholeGenome.RP-2158.bam 30606188785 BAM aligned CPTAC3 e552b00d-62c3-4105-9e2a-4a8eff730bbb 2f54659e838ba4f02267c2f33d4061fb {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal"} -C3L-07213.WGS.N.hg38 C3L-07213 GBM WGS blood_normal CPT0408780002 64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wgs_gdc_realn.bam 89161123615 BAM harmonized CPTAC3 81f5956f-4df7-41d9-be6e-af59c628b6dd 40358538f8ff0ce10f2133cc96ebb15f {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal"} -C3L-07213.WGS.T C3L-07213 GBM WGS tumor CPT0407970010 CPT0407970010.WholeGenome.RP-2158.bam 21192425543 BAM aligned CPTAC3 512018cc-6dda-4966-acea-7e5655cbde7a 41d024de9790e2c2ec537be59394c81f {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor"} -C3L-07213.WGS.T.hg38 C3L-07213 GBM WGS tumor CPT0407970010 63cdc123-6efd-4d15-a5cb-4c8205b9eefe_wgs_gdc_realn.bam 61671193861 BAM harmonized CPTAC3 50f5310c-72b0-4d41-a8ce-6f4b370c351e 82e7b9ec1fed2cd76dd218d8e05de5db {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor"} -C3L-07213.WXS.N C3L-07213 GBM WXS blood_normal CPT0408780002 CPT0408780002.WholeExome.RP-1303.bam 24378992351 BAM aligned CPTAC3 2e4ad5e7-fe94-4252-a927-7e60bfbddf0d d911326b5b171c6419aadbeb648e5e08 {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal"} -C3L-07213.WXS.N.hg38 C3L-07213 GBM WXS blood_normal CPT0408780002 64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wxs_gdc_realn.bam 33733613698 BAM harmonized CPTAC3 51e744f3-1253-44bf-9b98-c26271785d96 89a1d2abef0098d5327c5c1867a7a021 {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal"} -C3L-07213.WXS.T C3L-07213 GBM WXS tumor CPT0407970010 CPT0407970010.WholeExome.RP-1303.bam 20738364712 BAM aligned CPTAC3 6b215bb0-a079-4c59-b74a-c3263ccfe118 d439fc8ec39f00ed358af66486156027 {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor"} -C3L-07213.WXS.T.hg38 C3L-07213 GBM WXS tumor CPT0407970010 63cdc123-6efd-4d15-a5cb-4c8205b9eefe_wxs_gdc_realn.bam 29144496069 BAM harmonized CPTAC3 57461fc1-881f-4b14-9c8c-6c795a225e1f 266f6416e51d889a2a09c0e4d9fcec86 {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor"} -C3L-07437.MethArray.Green.Tpb C3L-07437 AML Methylation_Array tumor_peripheral_blood CPT0409210002 205707890143_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a926175e-eaba-4889-8836-e503b5e7a535 98140d8c4b398f06dbcf387eeccc78b5 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.MethArray.Red.Tpb C3L-07437 AML Methylation_Array tumor_peripheral_blood CPT0409210002 205707890143_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 4f06c41e-e122-4312-adb4-8a76617dc698 cfcbe061f9d3745d271290f999accdfe {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.miRNA-Seq.S7_L003_R1.Tpb C3L-07437 AML miRNA-Seq tumor_peripheral_blood CPT0409220002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATTTT_S7_L003_R1_001.unaln.bam 281880782 BAM S7_L003_R1 unaligned CPTAC3 8f930cdf-c82c-4e0a-ab86-e8bb1ee6f85b d1559341ca7d433c80a8e36a51d133bd {"aliquot_tag": "ALQ_9b5d855", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.miRNA-Seq.Tpb.hg38 C3L-07437 AML miRNA-Seq tumor_peripheral_blood CPT0409220002 984401a7-3608-414c-83e0-ae1619671d9b_mirnaseq_gdc_realn.bam 311512296 BAM harmonized CPTAC3 f03e52d6-48b6-4ee5-9980-1759dd42fadc f8a48ec133bfe79c63cbe9a22b393653 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.RNA-Seq.chimeric.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.chimeric.gdc_realn.bam 600809012 BAM chimeric harmonized CPTAC3 45f0b16b-2fb9-473b-bc50-51cc1518eaf5 9a3ea8b28025503a09e5a4146a40e400 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.RNA-Seq.genomic.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.genomic.gdc_realn.bam 7644508104 BAM genomic harmonized CPTAC3 31d49634-483a-4442-96ff-f9c8d1b6d782 c6a25ca6e98ddcf4c5e7307b4663ae30 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.RNA-Seq.S30_L008_R1.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 3625194988 FASTQ S30_L008_R1 unaligned CPTAC3 19f81621-5e25-4547-9d95-f56513c37ea3 51d969a9c428c5660e899c95c0f4d897 {"aliquot_tag": "ALQ_9b5d855", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.RNA-Seq.S30_L008_R2.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4118264722 FASTQ S30_L008_R2 unaligned CPTAC3 37df23e8-805f-4e27-85cd-dc39f8570266 ba3caa02727d2b1e462a915fa4f3373f {"aliquot_tag": "ALQ_9b5d855", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.RNA-Seq.transcriptome.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.transcriptome.gdc_realn.bam 8559938700 BAM transcriptome harmonized CPTAC3 97a8a541-c560-4d7f-a5ca-c6b667e19e37 95cc45e1e88f1729c68f4cd20a62f221 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.WGS.Nbc C3L-07437 AML WGS buccal_normal CPT0409180001 CPT0409180001.WholeGenome.RP-2158.bam 44608274877 BAM aligned CPTAC3 7a9c3765-7f33-47f9-a9e1-818c230385c0 8ab7f49e31d4ce076a041409c9586b1f {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07437.WGS.Nbc.hg38 C3L-07437 AML WGS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wgs_gdc_realn.bam 133771417041 BAM harmonized CPTAC3 7f2b71bd-804b-4dbb-9d74-3539784d34e4 00cf53e76531fa5ddc0d2a7a70843c51 {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07437.WGS.Tpb C3L-07437 AML WGS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeGenome.RP-2158.bam 62735180275 BAM aligned CPTAC3 8230713e-1203-45ad-bc5e-288baeef2eb7 c25964a23dc48cdb346425663c7bdab6 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.WGS.Tpb.hg38 C3L-07437 AML WGS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wgs_gdc_realn.bam 184732398408 BAM harmonized CPTAC3 b8a63078-67cb-4929-afe2-4ab723ea9327 0c6be709aa13b3f1bccf1ab1c7cd4bfa {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.WXS.Nbc C3L-07437 AML WXS buccal_normal CPT0409180001 CPT0409180001.WholeExome.RP-1303.bam 29530926162 BAM aligned CPTAC3 9004ddec-1d9b-4675-89e8-42c856e6bdea edf4fceefe20165b24f6b6ea284d92cf {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07437.WXS.Nbc.hg38 C3L-07437 AML WXS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wxs_gdc_realn.bam 39957535150 BAM harmonized CPTAC3 2d79233e-307d-4835-b070-47feba860d01 e724ce4313c17ac322eab79b779a608d {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07437.WXS.Tpb C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeExome.RP-1303.bam 26091082341 BAM aligned CPTAC3 b620a304-20ec-44c8-adf0-6770dae68220 1913d52199f8e6e125716d0ecb3b2a45 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07437.WXS.Tpb.hg38 C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wxs_gdc_realn.bam 36014507825 BAM harmonized CPTAC3 c030fb7f-77a4-4c1f-8a7e-06a6f91bef61 0aeed95744a8951c7e479c2e73f779f8 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.MethArray.Green.Tpb C3L-07439 AML Methylation_Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 65eebb3e-2e03-41b2-824a-4d1a730a879e cc0da6c18aae8761eceb026dc0c0c63a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.MethArray.Red.Tpb C3L-07439 AML Methylation_Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 24467b3c-6531-47aa-bcbf-9161bf286e16 77c0e440730e5be3d02b29c9ac9fd342 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.miRNA-Seq.S6_L003_R1.Tpb C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L003_R1_001.unaln.bam 188685033 BAM S6_L003_R1 unaligned CPTAC3 0d92688a-ace0-45e7-927e-256c262d8216 ef67e9ab1fbe0f329b17e02f9bbb2fad {"aliquot_tag": "ALQ_a098480", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.miRNA-Seq.Tpb.hg38 C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 61124569-679a-4853-b053-5ea1d2aa3fa7_mirnaseq_gdc_realn.bam 210846683 BAM harmonized CPTAC3 5c742f42-1883-4f6b-8a87-957cdae95ac3 1dcb39c80237ae840a5f28f0abdf5c29 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.RNA-Seq.chimeric.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.chimeric.gdc_realn.bam 434731531 BAM chimeric harmonized CPTAC3 0454cd0a-6cb5-4452-9cfe-4df9d3b93c23 4cd2bea4903622a62ff10ce0d2fdd826 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.RNA-Seq.genomic.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.genomic.gdc_realn.bam 7018682144 BAM genomic harmonized CPTAC3 1031f657-e8f4-4efd-84ac-cc2b00760f72 4637c11bae0a826ea6a4529136ddd821 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.RNA-Seq.S28_L007_R1.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R1_001.fastq.gz 3579652035 FASTQ S28_L007_R1 unaligned CPTAC3 8506fcf0-4ced-4a2a-90ed-878fa8d0f751 e227210cee8b5ee711424c484e438d59 {"aliquot_tag": "ALQ_a098480", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.RNA-Seq.S28_L007_R2.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R2_001.fastq.gz 3786729975 FASTQ S28_L007_R2 unaligned CPTAC3 691147a6-204e-4cfc-acf0-16b432c7ed3d debd56e893ccbdd446174d46084c590a {"aliquot_tag": "ALQ_a098480", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.RNA-Seq.transcriptome.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.transcriptome.gdc_realn.bam 9872199459 BAM transcriptome harmonized CPTAC3 ee730d3f-1803-41fd-b4bd-a876db038534 2b5a1477dd9800955ae184995b53e0e7 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.WGS.Nbc C3L-07439 AML WGS buccal_normal CPT0409330001 CPT0409330001.WholeGenome.RP-2158.bam 52560119755 BAM aligned CPTAC3 1c203f7a-5a16-4c05-a9d1-4afbeb1d2b17 34dde5a5ec15f7a47340ef8d0f7ce3e3 {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07439.WGS.Nbc.hg38 C3L-07439 AML WGS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wgs_gdc_realn.bam 154859851406 BAM harmonized CPTAC3 8f38803a-d993-4cf9-a78b-121bb76b10d0 8e0f23d7cbf6ce53147d052dbe772b63 {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07439.WGS.Tpb C3L-07439 AML WGS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeGenome.RP-2158.bam 50005341006 BAM aligned CPTAC3 b1c9ca06-e545-4be0-b6fd-57a9d5cc8221 f8156680b0d406d407871f72e6b8ae0a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.WGS.Tpb.hg38 C3L-07439 AML WGS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wgs_gdc_realn.bam 149168323555 BAM harmonized CPTAC3 e8607566-c0aa-40a6-9b90-263e0ab072b1 3b014e27c6ca6296220af36d2a394454 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.WXS.Nbc C3L-07439 AML WXS buccal_normal CPT0409330001 CPT0409330001.WholeExome.RP-1303.bam 24435246882 BAM aligned CPTAC3 9cd320ff-ce98-4e17-a6bb-b5f3bf9083dc 023bcdee9f921f67b701c86599d487d7 {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07439.WXS.Nbc.hg38 C3L-07439 AML WXS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wxs_gdc_realn.bam 85771065654 BAM harmonized CPTAC3 eed05d67-1bf7-436f-bfdb-b07dd6beb964 74e3e5d9c7c8ebf919257fe2ece95f1a {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07439.WXS.Tpb C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeExome.RP-1303.bam 24945939921 BAM aligned CPTAC3 57f58bb4-54c3-4331-a72d-67a0561eca98 07756efe1f1a96dcbb254fa31679d464 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07439.WXS.Tpb.hg38 C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wxs_gdc_realn.bam 34896018172 BAM harmonized CPTAC3 c2f2bdfe-749a-4ba2-bd39-fee94d5b2e30 2d1784670cc5931edb214cbbaeb5810a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3L-07490.MethArray.Green.Tbm C3L-07490 AML Methylation_Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7a2f2d6b-a7d4-4b18-a5a4-63f485025570 7d0de35217e92d2f28cc11844581632c {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.MethArray.Red.Tbm C3L-07490 AML Methylation_Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 f359d895-7a5b-4c09-809d-9cbdc63a8128 0add2784f43acd747a1c410199aaf597 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.miRNA-Seq.S29_L005_R1.Tbm C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACTCA_S29_L005_R1_001.unaln.bam 179381519 BAM S29_L005_R1 unaligned CPTAC3 f13a0eae-a044-4414-acd2-81068f92f0f9 786e8aa16cc7c57f58ddb68b19435b9a {"aliquot_tag": "ALQ_5fb3f2e0", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.miRNA-Seq.Tbm.hg38 C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 496ed66a-2355-47eb-ad9d-5cda0397c7b2_mirnaseq_gdc_realn.bam 188896528 BAM harmonized CPTAC3 fbbe1717-1692-4530-8b49-15b51c269402 6a216adaa4afc4e988de2b2653c3a5e7 {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.RNA-Seq.chimeric.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.chimeric.gdc_realn.bam 194098252 BAM chimeric harmonized CPTAC3 b56723a7-2346-4c81-9fdb-5864fdf000ab 5191a90760624cd2d17126b84827e962 {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.RNA-Seq.genomic.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.genomic.gdc_realn.bam 8865670253 BAM genomic harmonized CPTAC3 deb0c477-4194-44c3-9ffc-79e0d217c575 136573030310ec67b99213822cab529d {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.RNA-Seq.S4_L001_R1.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 3720404856 FASTQ S4_L001_R1 unaligned CPTAC3 2ebf6805-a5c8-43d5-8fee-730861c13580 36710ec306d9ad0ea4f63310d0a2c82c {"aliquot_tag": "ALQ_5fb3f2e0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.RNA-Seq.S4_L001_R2.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4031405226 FASTQ S4_L001_R2 unaligned CPTAC3 3215eaf9-a581-4e1b-b71b-3c96b7876cba 6cfa1b63a61ae91cb2e3548fc6150c44 {"aliquot_tag": "ALQ_5fb3f2e0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.RNA-Seq.transcriptome.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.transcriptome.gdc_realn.bam 8061105399 BAM transcriptome harmonized CPTAC3 28c27d89-b22d-4c04-af02-c3688367cac7 d9209bd1c4d5887bb3858e48f4741be5 {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.WGS.Nbc C3L-07490 AML WGS buccal_normal CPT0413320001 CPT0413320001.WholeGenome.RP-2158.bam 69601657577 BAM aligned CPTAC3 16a35b27-7141-41ab-914a-0c546541377f 2f915bf176d1f04ca062f5e074d48d6f {"aliquot_tag": "ALQ_333a059a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07490.WGS.Nbc.hg38 C3L-07490 AML WGS buccal_normal CPT0413320001 c502ce9b-dc6f-4707-bfdb-b16ec51de8b9_wgs_gdc_realn.bam 203974244131 BAM harmonized CPTAC3 6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d 5ab45898c09355f64da1c18a69a13b32 {"aliquot_tag": "ALQ_333a059a", "gdc_sample_type": "Buccal Cell Normal"} -C3L-07490.WGS.Tbm C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeGenome.RP-2158.bam 60421758045 BAM aligned CPTAC3 b9149ef7-4087-44d7-9c74-1ef27aedebf2 156144d24680b3a44d6af733262ba486 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.WGS.Tbm.hg38 C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wgs_gdc_realn.bam 176588748562 BAM harmonized CPTAC3 036102b0-a019-45e8-b9db-ea99632f6ad5 88ab345a94fb82932718332995380a61 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.WXS.Tbm C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeExome.RP-1303.bam 30811613444 BAM aligned CPTAC3 3d1cd92b-4657-496a-a287-0dbbe1b08799 0f1f3f851f7cf4b9a41a67b19fb85d44 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07490.WXS.Tbm.hg38 C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wxs_gdc_realn.bam 42160884574 BAM harmonized CPTAC3 1931582d-980b-4481-b433-4f97b84e40ea ce5d9ec24792eddb3f2d295b03c0d329 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3L-07611.MethArray.Green.T C3L-07611 GBM Methylation_Array tumor CPT0408500007 204930640111_R05C01_Grn.idat 13677956 IDAT Green NA CPTAC3 a80351fb-be92-4aae-9b24-8c2e2370af27 9fdf36237e405087ed3636a0d0f03061 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor"} -C3L-07611.MethArray.Red.T C3L-07611 GBM Methylation_Array tumor CPT0408500007 204930640111_R05C01_Red.idat 13677956 IDAT Red NA CPTAC3 400527c0-c3b5-46c0-a60e-1cb3f76ee084 87564f3c61ba792f87175c055cefec8d {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor"} -C3L-07611.miRNA-Seq.S37_L005_R1.T C3L-07611 GBM miRNA-Seq tumor CPT0408500010 210702_UNC32-K00270_0289_AHKJ22BBXY_TCATTC_S37_L005_R1_001.unaln.bam 204155380 BAM S37_L005_R1 unaligned CPTAC3 c4abe2f9-b7a8-4da2-a185-9be4ff656788 0dc4074a99e2737514957892bcc88998 {"aliquot_tag": "ALQ_3f12e054", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07611.miRNA-Seq.T.hg38 C3L-07611 GBM miRNA-Seq tumor CPT0408500010 bef3b046-b164-4256-b897-72cddd0633fd_mirnaseq_gdc_realn.bam 221187925 BAM harmonized CPTAC3 070bcd79-11ca-4b65-8a39-3e9bdafb6d57 ab46278cef78fb338a44918383058034 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor"} -C3L-07611.RNA-Seq.chimeric.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.chimeric.gdc_realn.bam 228015781 BAM chimeric harmonized CPTAC3 afc0c0bf-c7b3-41e5-a155-36220c735099 7a2a110f50a191cf69320bacdd6ac793 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor"} -C3L-07611.RNA-Seq.genomic.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.genomic.gdc_realn.bam 8082724853 BAM genomic harmonized CPTAC3 2b301d6a-175a-42f8-a550-0f2ed137d045 e3d6db89e56b5f6e34d1523782dcc6f3 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor"} -C3L-07611.RNA-Seq.S14_L004_R1.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R1_001.fastq.gz 3891845626 FASTQ S14_L004_R1 unaligned CPTAC3 a19a4590-1bba-4407-8833-4c424dbd4e7a c0d3e2e4ca88dabd470de07dcca9c6ad {"aliquot_tag": "ALQ_3f12e054", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3L-07611.RNA-Seq.S14_L004_R2.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R2_001.fastq.gz 4019885625 FASTQ S14_L004_R2 unaligned CPTAC3 715c0803-92be-4427-84a0-318fb948c958 76da8036d9027f6f9f0e7d3e494e6f43 {"aliquot_tag": "ALQ_3f12e054", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3L-07611.RNA-Seq.transcriptome.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.transcriptome.gdc_realn.bam 10683144478 BAM transcriptome harmonized CPTAC3 48976778-bb2a-42d5-a0b0-7181f43c358b c741ceb6bcd83743ec6c525c636457f8 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor"} -C3L-07611.WGS.N C3L-07611 GBM WGS blood_normal CPT0408580002 CPT0408580002.WholeGenome.RP-2158.bam 29383404617 BAM aligned CPTAC3 1679fa71-9071-4fbd-935a-f4e78426660b 6fa1d2f9df253583fabfacdd1b670953 {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-07611.WGS.N.hg38 C3L-07611 GBM WGS blood_normal CPT0408580002 3c805b24-a57c-4477-996b-927a7fe9ccb2_wgs_gdc_realn.bam 86255744603 BAM harmonized CPTAC3 0ef89055-e885-438d-9e05-f60f89725367 dafb20f5b916b858ac33e2cfe5a7fd9e {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-07611.WGS.T C3L-07611 GBM WGS tumor CPT0408500007 CPT0408500007.WholeGenome.RP-2158.bam 26632148378 BAM aligned CPTAC3 89f9ad5f-5d86-4051-a85d-38d4aadfa686 4acdaaf5e23081f50d9e79cbb351672d {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor"} -C3L-07611.WGS.T.hg38 C3L-07611 GBM WGS tumor CPT0408500007 f135e074-b46a-473b-8015-439c78e8f6fd_wgs_gdc_realn.bam 77090269449 BAM harmonized CPTAC3 c86ee9c9-faff-49f4-b731-53751cc80228 5b73a27fd33f83b4707f78b35fcb4721 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor"} -C3L-07611.WXS.N C3L-07611 GBM WXS blood_normal CPT0408580002 CPT0408580002.WholeExome.RP-1303.bam 26865804794 BAM aligned CPTAC3 1b7849bc-141f-4fcd-9d8e-050d04c9d724 e7a0db6a290e4173d0dbcf555889ba28 {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-07611.WXS.N.hg38 C3L-07611 GBM WXS blood_normal CPT0408580002 3c805b24-a57c-4477-996b-927a7fe9ccb2_wxs_gdc_realn.bam 37940973867 BAM harmonized CPTAC3 49d7c1cf-db69-41a6-9cbb-88f382ced875 9e26d5e9e2d06f36221e8cbccc43c222 {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal"} -C3L-07611.WXS.T C3L-07611 GBM WXS tumor CPT0408500007 CPT0408500007.WholeExome.RP-1303.bam 22260035637 BAM aligned CPTAC3 9eb37687-fdb1-4d97-8fe5-2a7a374d3395 317a4d5c2dd08fd1b7abd302e4b4be75 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor"} -C3L-07611.WXS.T.hg38 C3L-07611 GBM WXS tumor CPT0408500007 f135e074-b46a-473b-8015-439c78e8f6fd_wxs_gdc_realn.bam 30995726684 BAM harmonized CPTAC3 66ea66b9-4620-4c09-a59d-f9b1c0bcb09f eb067415cf8805b6c6c4ac02bd46a229 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_495404aa.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081590009 204367490043_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f6eaed9e-16f0-4b1f-bb96-86a35c644127 7b1e7d7c0280478b32bcb2bdcac4ce1e {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_495404aa.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081590009 204367490043_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 955ef901-2188-49a2-9201-11cd2f8094f9 514408ecda95e0797ad307ad65f000fc {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_495404aa.WGS.T C3N-00148 CCRCC WGS tumor CPT0081590009 CPT0081590009.WholeGenome.RP-2158.bam 25242046375 BAM aligned CPTAC3 ab8ca6d2-61be-4af8-816c-818a37171bf1 3916d1d0dee49702870a63f9b69062a1 {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_495404aa.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081590009 0dfc5413-c20e-46bf-ab76-de56b5d3dca5_wgs_gdc_realn.bam 75073168317 BAM harmonized CPTAC3 9689fb7a-0f95-48ad-bff0-31e7e7575ac8 08fdbcb23865926a106bd41dda5136a0 {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_495404aa.WXS.T C3N-00148 CCRCC WXS tumor CPT0081590009 CPT0081590009.WholeExome.RP-1303.bam 20136824575 BAM aligned CPTAC3 987fe07e-a3ec-4fb4-9d93-a5ecc6cb2bc4 b198817b9fcafad57d886accb495581e {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_495404aa.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081590009 0dfc5413-c20e-46bf-ab76-de56b5d3dca5_wxs_gdc_realn.bam 27529117609 BAM harmonized CPTAC3 ec8dc2c4-9a8a-4a55-b90b-2129c54b50ab 39bd60ec04f5e9ef10546367a0c79c23 {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_6f0f2054.miRNA-Seq.S27_L004_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081610006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L004_R1_001.unaln.bam 216922501 BAM S27_L004_R1 unaligned CPTAC3 27fa6e25-69ea-46ca-9d7d-bcf6a2cbdd94 0a6a241e6c4a5de5a6600c00af5c611a {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_6f0f2054.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081610006 780ece72-1465-41f6-a95c-950293545921_mirnaseq_gdc_realn.bam 239179433 BAM harmonized CPTAC3 f0b9a47a-cbf6-4d99-b530-1c2d327e5870 97cb701680cfd1bb04722e8bb8dc7d3a {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_6f0f2054.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.chimeric.gdc_realn.bam 239976045 BAM chimeric harmonized CPTAC3 bf8e68bb-33c6-4c97-b478-287d5e144347 4adba2658d6139efa92e3c90c5cae44a {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_6f0f2054.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.genomic.gdc_realn.bam 8145058930 BAM genomic harmonized CPTAC3 cfd59fcc-314a-4f0f-97c2-e616dfd333db 5bebb95258cfca7db5a1790e2bfd932e {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_6f0f2054.RNA-Seq.S14_L004_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R1_001.fastq.gz 3701454243 FASTQ S14_L004_R1 unaligned CPTAC3 2cdd2b94-10a0-41f6-adb6-6aa717245a40 9924a42947b6c3472d5f50694af315ba {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_6f0f2054.RNA-Seq.S14_L004_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R2_001.fastq.gz 4536249627 FASTQ S14_L004_R2 unaligned CPTAC3 65c1a61a-ffe3-4e34-96cd-1d5452ce0d90 4a6b49a51f18efb2389b4353ca8f6a10 {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_6f0f2054.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.transcriptome.gdc_realn.bam 9183359665 BAM transcriptome harmonized CPTAC3 cd2d42b3-6e41-473d-b0d9-bbc88406fda2 8744d924e151c968596601160a04a0df {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_74342d1a.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081580009 204367490093_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 54703a27-f4ab-4cbb-adea-1242035925df 800143be9a968c84f9d92ac57de70c9e {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_74342d1a.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081580009 204367490093_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 ecd429b3-fc1c-4671-959e-8775ec4cef9e 768948b32510a948e28b36e35d3b7064 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_74342d1a.WGS.T C3N-00148 CCRCC WGS tumor CPT0081580009 CPT0081580009.WholeGenome.RP-2158.bam 24499415520 BAM aligned CPTAC3 5aa8822e-a5f9-455c-857c-58faa6f0fd23 b94b83026bf941c3e6901104dbc87254 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_74342d1a.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081580009 9173e932-91db-4aef-9728-85f813c5952b_wgs_gdc_realn.bam 70146064208 BAM harmonized CPTAC3 5b2869e8-677e-4903-967b-e577ac7858cc 17afc1248f14e4cb68da6ee1c1ddadf0 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_74342d1a.WXS.T C3N-00148 CCRCC WXS tumor CPT0081580009 CPT0081580009.WholeExome.RP-1303.bam 22292381417 BAM aligned CPTAC3 0c1e685a-15ac-4e2f-9201-0fe227c1982c 48a555371c45269507a9bf0967284081 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_74342d1a.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081580009 9173e932-91db-4aef-9728-85f813c5952b_wxs_gdc_realn.bam 30594843788 BAM harmonized CPTAC3 93ecd7a4-8e8d-47dc-9d87-16b77cc7b3e3 39b2246fc22750a1bba7c6ecbfd28188 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_d9eb193b.miRNA-Seq.S4_L004_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081590006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGGCG_S4_L004_R1_001.unaln.bam 215706607 BAM S4_L004_R1 unaligned CPTAC3 cb9a8508-6510-457a-9740-817831f8215e da3de1bf56ceb1edf0227b625c8fa00e {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_d9eb193b.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081590006 70f8e422-e31d-41a0-bfa3-394b48225d0a_mirnaseq_gdc_realn.bam 240358408 BAM harmonized CPTAC3 f1e0d5e7-652c-4a33-815a-ede62c3adc24 50a328154c46927e0406c92ed8328d14 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_d9eb193b.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.chimeric.gdc_realn.bam 104693658 BAM chimeric harmonized CPTAC3 b73d90e9-9991-4dc7-a566-a3b4aac42daf 523a6509997118051f87c7f964ba47a7 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_d9eb193b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.genomic.gdc_realn.bam 8633244917 BAM genomic harmonized CPTAC3 c44c6ab8-4038-4ef3-838c-5e8e1900e46c e8f91bfc13415f291f6dc453c869aa67 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_d9eb193b.RNA-Seq.S16_L004_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R1_001.fastq.gz 4104332900 FASTQ S16_L004_R1 unaligned CPTAC3 76502b9a-7e4d-4688-a0e9-18f695e7e2b8 7896a34089af26f5ed636b70ad92942d {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_d9eb193b.RNA-Seq.S16_L004_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R2_001.fastq.gz 4888105949 FASTQ S16_L004_R2 unaligned CPTAC3 7872472a-affb-433b-bf1f-b492058828bb 21cee91f1d499b83ec5b4cd7018c7429 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_d9eb193b.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.transcriptome.gdc_realn.bam 10437458004 BAM transcriptome harmonized CPTAC3 c1767a7a-1d5f-4e56-8e58-3094d04010f4 74e8c015930c3006b246f1140278b46a {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_e48b308b.miRNA-Seq.S26_L004_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081580006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L004_R1_001.unaln.bam 164986231 BAM S26_L004_R1 unaligned CPTAC3 f8ac9419-3f47-4dbf-8714-3d727d046dfa ebbb608ec5a7e0342dd3b109e33d51bf {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_e48b308b.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081580006 80022834-d392-4fad-87e1-9576956c251a_mirnaseq_gdc_realn.bam 183335413 BAM harmonized CPTAC3 7195daa7-87e9-4605-b25c-42c6eb4c25cc 71ba9392a17ddae2b92e161db91ace1b {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_e48b308b.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.chimeric.gdc_realn.bam 188406815 BAM chimeric harmonized CPTAC3 28738bf5-afef-48ef-a16c-496004dd90cc 961a327119c3a1fa75a6134b3ab468d6 {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_e48b308b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.genomic.gdc_realn.bam 7438515443 BAM genomic harmonized CPTAC3 fdfb1f33-afb6-47a3-b22c-0349706b3081 5065adef1cc0154b0ed8ee12ae0297ae {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_e48b308b.RNA-Seq.S9_L003_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R1_001.fastq.gz 3662990781 FASTQ S9_L003_R1 unaligned CPTAC3 7057f456-2a17-45fc-9ef7-15142e833631 1c2a6f305f7a8fb8ed2e8d30384b8dad {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_e48b308b.RNA-Seq.S9_L003_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R2_001.fastq.gz 4251757262 FASTQ S9_L003_R2 unaligned CPTAC3 2932e604-2fe0-4aa2-90c6-186a4dd73334 217797df8e6e03870969e86d1c8f222c {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_e48b308b.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.transcriptome.gdc_realn.bam 8864829953 BAM transcriptome harmonized CPTAC3 7d82691a-95a8-4c89-acc4-6444c65fd505 e7ecdb0ce758e916eb2472fb663fb7a2 {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_ffb03dc5.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081610009 204372030072_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 605b2e6a-941f-4a09-80f6-682edbc8f380 bba8f29840919317560eea073116ea5a {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_ffb03dc5.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081610009 204372030072_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 67dcaa43-600e-4513-aa8a-fa39dab8a129 bf7b5c2619bec65d9412abbded9e54b5 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_ffb03dc5.WGS.T C3N-00148 CCRCC WGS tumor CPT0081610009 CPT0081610009.WholeGenome.RP-2158.bam 28213591174 BAM aligned CPTAC3 e6fdbe37-f822-4327-b81d-6b63abce7ba9 b7a6fdee2e10968ba17b00b6a74bfae3 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_ffb03dc5.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081610009 c3d0c798-3921-4d07-b355-d0c56d3e85c0_wgs_gdc_realn.bam 83772692900 BAM harmonized CPTAC3 b106741d-59eb-42e6-b699-1d03231ca80b bfdf466248bd3fad3f9025ec4342cc5c {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_ffb03dc5.WXS.T C3N-00148 CCRCC WXS tumor CPT0081610009 CPT0081610009.WholeExome.RP-1303.bam 19983518553 BAM aligned CPTAC3 89eaab6f-c051-4a36-884e-210ed6c8d634 525610f47e30c22c5b97857492103ce3 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.DUP_ffb03dc5.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081610009 c3d0c798-3921-4d07-b355-d0c56d3e85c0_wxs_gdc_realn.bam 27495571703 BAM harmonized CPTAC3 d736f758-647e-489d-a681-79ab73116e88 53968f386dbb0fd69f750bbe78ce8798 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00148.MethArray.Green.A C3N-00148 CCRCC Methylation_Array tissue_normal CPT0081620009 204930640108_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b135529e-c8bd-4e20-b709-e0f75e944676 eeee135c2ec8870e31127474ccb32694 {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081600006 202184900104_R08C01_Grn.idat 13676256 IDAT Green NA CPTAC3 3fa87ccb-2393-4f48-957e-812d6cad2eae f5b972e9afbe16aa6f5ca0485164161c {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor"} -C3N-00148.MethArray.Red.A C3N-00148 CCRCC Methylation_Array tissue_normal CPT0081620009 204930640108_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 51ab0091-4cf0-4820-8a4c-b064364c9dae b001cbbb15cc6a44614b771f165acee1 {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081600006 202184900104_R08C01_Red.idat 13676256 IDAT Red NA CPTAC3 42e7346d-ce99-406c-bef4-2fa6bc79f095 8c63db95d4c260d7d84567deac4a55af {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor"} -C3N-00148.miRNA-Seq.A.hg38 C3N-00148 CCRCC miRNA-Seq tissue_normal CPT0081620006 35ae3dd2-7236-46b7-9c39-f112ca2d561e_mirnaseq_gdc_realn.bam 209797587 BAM harmonized CPTAC3 9a5c3a2c-bc30-4bce-8087-d1a1094c0e5a b0af324d569b1dabf91495f66b35ddf7 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.miRNA-Seq.S26_L002_R1.A C3N-00148 CCRCC miRNA-Seq tissue_normal CPT0081620006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L002_R1_001.unaln.bam 189924824 BAM S26_L002_R1 unaligned CPTAC3 5df9e78b-e37d-4284-9eed-64a9a6166eeb aaaae05a8aa1c7ed7a0e7fab6942316e {"aliquot_tag": "ALQ_28af5a84", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.miRNA-Seq.S5_L006_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081600009 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L006_R1_001.unaln.bam 236100123 BAM S5_L006_R1 unaligned CPTAC3 3a781daf-e927-4eae-8a82-bea66bf67dc2 607655795bbb9c385bc10f93c84c6159 {"aliquot_tag": "ALQ_c2d01475", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081600009 c0ee240d-4281-41a6-aa8f-00226c6e33b5_mirnaseq_gdc_realn.bam 261759217 BAM harmonized CPTAC3 3ee5325a-4b5d-4317-906a-6b5eaab4edd0 9338f7f7e790234fe0a3c08f24e75026 {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor"} -C3N-00148.RNA-Seq.chimeric.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.chimeric.gdc_realn.bam 65294643 BAM chimeric harmonized CPTAC3 d9986361-69c1-45fe-94d6-b78b908b9813 eac3cac502ec27bdec6ad75c3c69dc43 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.chimeric.gdc_realn.bam 53975736 BAM chimeric harmonized CPTAC3 6cbcff00-af84-41fc-acaa-0381e791aabe 797251f3904d20455d6ee67f812bf379 {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor"} -C3N-00148.RNA-Seq.genomic.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.genomic.gdc_realn.bam 9264727882 BAM genomic harmonized CPTAC3 2859d494-26d1-4f93-9a1e-c5adc3a3a66d 68019d3113994a2bdf4072d01dfa43d1 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.genomic.gdc_realn.bam 9902160939 BAM genomic harmonized CPTAC3 9f86ce00-fc2e-4662-800d-05ebab6e5141 6b547d5e9f77bdd76b3674c8867d332d {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor"} -C3N-00148.RNA-Seq.S1_L001_R1.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R1_001.fastq.gz 4500742385 FASTQ S1_L001_R1 unaligned CPTAC3 e8912d94-cb0d-43a9-8162-74cfaa687f6b 56a7d6c797c120c031572aef5a4fcba5 {"aliquot_tag": "ALQ_28af5a84", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.RNA-Seq.S1_L001_R2.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R2_001.fastq.gz 4876089984 FASTQ S1_L001_R2 unaligned CPTAC3 295e5db0-2734-4385-9867-95978059c72f 9ae22a8d40033409dcbe25b579632123 {"aliquot_tag": "ALQ_28af5a84", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.RNA-Seq.S6_L008_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R1_001.fastq.gz 4810717249 FASTQ S6_L008_R1 unaligned CPTAC3 48e2576c-57dd-4e80-8362-7c35daed4204 53542237cb90bbc646ab391435e12226 {"aliquot_tag": "ALQ_c2d01475", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.RNA-Seq.S6_L008_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R2_001.fastq.gz 5280330533 FASTQ S6_L008_R2 unaligned CPTAC3 a250f5fc-fc5b-45e1-83b7-9139dd06398e d32f84107b3454e1642c3f1086758ffe {"aliquot_tag": "ALQ_c2d01475", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.RNA-Seq.transcriptome.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.transcriptome.gdc_realn.bam 10951576023 BAM transcriptome harmonized CPTAC3 13cb4e22-9a20-4388-98cc-3ada22a9da32 7271f6584cef2c827ea323d40c6a8216 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.transcriptome.gdc_realn.bam 11528905049 BAM transcriptome harmonized CPTAC3 00ef0669-e3d9-4c02-9af3-903455dbe859 8fa11d2752df6897beebb629f5534990 {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S3_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R1_001.fastq.gz 4545417676 FASTQ S3_L003_R1 unaligned CPTAC3 b1b10e79-2b1d-4ef8-8b36-4be8f69f0a7c 77a44cb98278eb1e53fad6714265d20d {"aliquot_tag": "ALQ_8dfaf545", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S3_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R2_001.fastq.gz 16324750458 FASTQ S3_L003_R2 unaligned CPTAC3 517b282d-1f91-4d37-999f-1a86d84f466e 3de0b535ea35934be411ce1560cf6108 {"aliquot_tag": "ALQ_8dfaf545", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S4_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R1_001.fastq.gz 4782641146 FASTQ S4_L003_R1 unaligned CPTAC3 bab6b2bb-f08e-45ba-adc4-f83638a80b5d 47789ffcf6f9ad3d24374fea0ab7b0b9 {"aliquot_tag": "ALQ_b09adcf5", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S4_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R1_001.fastq.gz 3116857723 FASTQ S4_L003_R1 unaligned CPTAC3 bdd0aafc-9de4-4cec-8e78-cf1a61c1503b 87d03f41f948a011ec5fc43888af57eb {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S4_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R2_001.fastq.gz 4782641146 FASTQ S4_L003_R2 unaligned CPTAC3 6ac52a76-b8da-4f73-82e6-985080acafc3 47789ffcf6f9ad3d24374fea0ab7b0b9 {"aliquot_tag": "ALQ_b09adcf5", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S4_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R2_001.fastq.gz 11002906348 FASTQ S4_L003_R2 unaligned CPTAC3 cc04ff73-6900-4928-885c-552cd8b11b7a f86593168fe72dca9765a868dc1a8c81 {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S5_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R1_001.fastq.gz 3266690810 FASTQ S5_L003_R1 unaligned CPTAC3 5e058d5d-614b-4f75-bd9b-f9e623f25bb2 0aa4d1a32c688d5bcc404abaf1a449c0 {"aliquot_tag": "ALQ_67ee59a", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S5_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R2_001.fastq.gz 11520663145 FASTQ S5_L003_R2 unaligned CPTAC3 e6457d1b-b66c-4681-8420-6c1bb80e92d9 6741a5271692a91db8769147ecc40dd7 {"aliquot_tag": "ALQ_67ee59a", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S7_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R1_001.fastq.gz 2226966916 FASTQ S7_L003_R1 unaligned CPTAC3 946d0aa0-3574-4d02-839f-78b2b5d40fa8 3823391e1de4b50664c40d7b1290db8a {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S7_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R1_001.fastq.gz 2729330431 FASTQ S7_L003_R1 unaligned CPTAC3 6973e83e-2258-438b-8930-1cc7149ec62a 7abd0e4e16bfb8a6bdb94d8f599d6aeb {"aliquot_tag": "ALQ_67ee59a", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S7_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R2_001.fastq.gz 7808630322 FASTQ S7_L003_R2 unaligned CPTAC3 aff0b02f-54c3-477b-b378-b16b561f59b9 7c9001db35aa622bc9073f145fd2cbb5 {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.scRNA-Seq.S7_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R2_001.fastq.gz 9553422581 FASTQ S7_L003_R2 unaligned CPTAC3 92e4f7f5-2dd1-4901-ac67-00de1bdb01dc 6c126ccff34770454566b3416fd48b7a {"aliquot_tag": "ALQ_67ee59a", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00148.WGS.A C3N-00148 CCRCC WGS tissue_normal CPT0081620009 CPT0081620009.WholeGenome.RP-1303.bam 53860588095 BAM aligned CPTAC3 5bdf214f-fa22-4a94-94f2-87bf6021505f e81f87af060d1bb9bd72c3497d907bac {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.WGS.A.hg38 C3N-00148 CCRCC WGS tissue_normal CPT0081620009 03f3a930-23ac-4022-a180-7eddf513f3a6_wgs_gdc_realn.bam 78288422049 BAM harmonized CPTAC3 31226045-9a66-42b4-bfef-6e2b3eec8b23 8a0f887ce5c33652a03dba9e2c98b5ca {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.WGS.N C3N-00148 CCRCC WGS blood_normal CPT0081700002 CPT0081700002.WholeGenome.RP-1303.bam 89652895870 BAM aligned CPTAC3 3ca1f926-6bb2-47ba-a820-86a3663e1f76 e34f27ed633e3f654d52d9c1478e5b21 {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal"} -C3N-00148.WGS.N.hg38 C3N-00148 CCRCC WGS blood_normal CPT0081700002 925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 137507958986 BAM harmonized CPTAC3 aeb1deff-af9c-4977-8b98-e3ebfc0653bd a8cac6f0aef671c7ca85be8006f2b22f {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal"} -C3N-00148.WGS.T C3N-00148 CCRCC WGS tumor CPT0081600006 CPT0081600006.WholeGenome.RP-1303.bam 77317662300 BAM aligned CPTAC3 a895a77c-a125-4733-baa4-59cade0faedb 20392a262d08f9191128a2d749ce5e30 {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor"} -C3N-00148.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081600006 127293c3-8feb-4aa1-8f52-1461eeff35ca_gdc_realn.bam 116233772122 BAM harmonized CPTAC3 521f64b0-af2c-46ca-915d-2b4d563b744d 430468b61397fc993764cc178a0ce7b2 {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor"} -C3N-00148.WXS.A C3N-00148 CCRCC WXS tissue_normal CPT0081620009 CPT0081620009.WholeExome.RP-1303.bam 38811714661 BAM aligned CPTAC3 273c20bd-8048-42bc-9e81-1114f09e9c07 cd6a42aa2829c35a4a456970a7212c4c {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.WXS.A.hg38 C3N-00148 CCRCC WXS tissue_normal CPT0081620009 03f3a930-23ac-4022-a180-7eddf513f3a6_wxs_gdc_realn.bam 52704436616 BAM harmonized CPTAC3 4ab5a44a-7587-489f-98af-b649d5501bdf 9118f3f0250e7453e618b6784d275e91 {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00148.WXS.N C3N-00148 CCRCC WXS blood_normal CPT0081700002 CPT0081700002.WholeExome.RP-1303.bam 33961808473 BAM aligned CPTAC3 d6f5f349-2db3-4d20-a6b3-108495eedfd6 040101c3d5583522d9272338a0ccbc63 {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal"} -C3N-00148.WXS.N.hg38 C3N-00148 CCRCC WXS blood_normal CPT0081700002 925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 45883027420 BAM harmonized CPTAC3 06dcff89-4b72-4e25-ac00-9f8ad4f4a30c 11255bc3d065f34081ce52e3c6edf80e {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal"} -C3N-00148.WXS.T C3N-00148 CCRCC WXS tumor CPT0081600006 CPT0081600006.WholeExome.RP-1303.bam 31418941646 BAM aligned CPTAC3 30b16a42-d46d-4732-8aa6-f6b69a3cae21 43f34ceb0be6050937fcd876274c09cb {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor"} -C3N-00148.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081600006 127293c3-8feb-4aa1-8f52-1461eeff35ca_gdc_realn.bam 43598251608 BAM harmonized CPTAC3 d32aed5c-6bb2-47ac-aa60-98df1b7e2472 ecc3474437ba7cec7fa07f76c7953f20 {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_260c02bd.MethArray.Green.T C3N-00149 CCRCC Methylation_Array tumor CPT0084580009 204367470132_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 21afa015-4a00-48b7-a31d-185b6f371928 e2b9ff39cc675d0b903dd9f3867a6dac {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_260c02bd.MethArray.Red.T C3N-00149 CCRCC Methylation_Array tumor CPT0084580009 204367470132_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 457c04a5-d5d7-4f23-a7f0-ca37269ab5d3 77ca5c88421f16a49db89b4ea0c5f0f3 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_260c02bd.WGS.T C3N-00149 CCRCC WGS tumor CPT0084580009 CPT0084580009.WholeGenome.RP-2158.bam 21996898179 BAM aligned CPTAC3 7ace4ebf-0177-4724-91f6-30995af8205a f7ec47661a2345986faa2cd2b1a6a357 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_260c02bd.WGS.T.hg38 C3N-00149 CCRCC WGS tumor CPT0084580009 20edbb55-6868-4cd4-a52e-39f17635dba4_wgs_gdc_realn.bam 63280894348 BAM harmonized CPTAC3 d19e6fca-046a-437d-a1e4-081d234a3eb6 a7b0a508ed5bf3112ea85fbb1312da17 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_260c02bd.WXS.T C3N-00149 CCRCC WXS tumor CPT0084580009 CPT0084580009.WholeExome.RP-1303.bam 18528240964 BAM aligned CPTAC3 2f17ad73-8799-4852-a1fd-7585c06107ac f07be156f9d1862cce1195390e34558b {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_260c02bd.WXS.T.hg38 C3N-00149 CCRCC WXS tumor CPT0084580009 20edbb55-6868-4cd4-a52e-39f17635dba4_wxs_gdc_realn.bam 25579475038 BAM harmonized CPTAC3 b6511fa6-00ee-4f91-a4d0-006f9a4f3a85 c841caee4353535adea196176642e687 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_34e388fd.miRNA-Seq.S8_L004_R1.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084570006 200526_UNC32-K00270_0248_BHH7WFBBXY_CGGAAT_S8_L004_R1_001.unaln.bam 330404915 BAM S8_L004_R1 unaligned CPTAC3 8a2931ef-421e-42ac-bbf9-94d569db08a5 7f1c76c59a2d6a45f1765b14949a0fed {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_34e388fd.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084570006 fc7bba3f-2f0c-4018-9151-89102e0a4eea_mirnaseq_gdc_realn.bam 370132285 BAM harmonized CPTAC3 c7641f78-88a8-4e1f-8ae3-0b693deaf8e5 485b219f3614dcd9b7996246c3f482ed {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_34e388fd.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.chimeric.gdc_realn.bam 109963027 BAM chimeric harmonized CPTAC3 92a4ee01-22a9-4a0c-9946-64e983830079 4fff1bf93efc7a50ea3b87055739a265 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_34e388fd.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.genomic.gdc_realn.bam 7814489885 BAM genomic harmonized CPTAC3 658d81fb-0482-4ebe-9527-e435b595e440 a5957d05e1fcf22b8de80163bcd959ba {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_34e388fd.RNA-Seq.S20_L005_R1.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R1_001.fastq.gz 3537365441 FASTQ S20_L005_R1 unaligned CPTAC3 a941166b-5b56-45e2-98a7-59ba41c85957 d6e972b9667a9e42eafb4217d701aa22 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_34e388fd.RNA-Seq.S20_L005_R2.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R2_001.fastq.gz 4166328187 FASTQ S20_L005_R2 unaligned CPTAC3 0e99e57d-7be8-4722-a1ae-215713fd506f 62e5c31066a9e21e98ac3545bfe80dd3 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_34e388fd.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.transcriptome.gdc_realn.bam 10097879509 BAM transcriptome harmonized CPTAC3 58b067dd-c134-43e0-93cc-c23246f8bab0 606d20275892789effb625e4ba2a1c50 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_a45c956c.MethArray.Green.T C3N-00149 CCRCC Methylation_Array tumor CPT0084570009 204372030076_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 0ff762c9-d7a3-47f8-953a-81430771e8f0 c069f60d771e7fe26a53bd988ecf6cb9 {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_a45c956c.MethArray.Red.T C3N-00149 CCRCC Methylation_Array tumor CPT0084570009 204372030076_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 c7d35b4c-1e53-4824-ae3c-37e3020b3e33 ac1ecb29b32ce90dc7406d9d0af51a5f {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_a45c956c.WGS.T C3N-00149 CCRCC WGS tumor CPT0084570009 CPT0084570009.WholeGenome.RP-2158.bam 19609031492 BAM aligned CPTAC3 1b1d8360-7d32-4e05-907d-6797ff51629c 6e627fc4ed4aa14f9d3b28c29e644649 {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_a45c956c.WGS.T.hg38 C3N-00149 CCRCC WGS tumor CPT0084570009 e85fb411-a7ef-49d9-accf-9bcec1ab0ce3_wgs_gdc_realn.bam 58057287596 BAM harmonized CPTAC3 fc8459a4-c8dc-45de-9462-a520cefe1528 4ff660071b75cb58622cd96f52fb9b03 {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_a45c956c.WXS.T C3N-00149 CCRCC WXS tumor CPT0084570009 CPT0084570009.WholeExome.RP-1303.bam 18290571011 BAM aligned CPTAC3 9035160e-ba85-49dc-b7cf-fb1761262982 0d0d2b2d1282e63168b5dcbe6accac2b {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_a45c956c.WXS.T.hg38 C3N-00149 CCRCC WXS tumor CPT0084570009 e85fb411-a7ef-49d9-accf-9bcec1ab0ce3_wxs_gdc_realn.bam 25912868980 BAM harmonized CPTAC3 2d1ccfc8-06f4-48f9-a989-bcde1128da7a 7357e193da4fcb962dc45b57e6d28eda {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_b6b31f2c.miRNA-Seq.S9_L004_R1.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084580006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTAGCT_S9_L004_R1_001.unaln.bam 318693839 BAM S9_L004_R1 unaligned CPTAC3 b9a93c6b-f991-4e3e-8626-5bbfcb6f9273 2d74b520f604398621dd245262ffba45 {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_b6b31f2c.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084580006 6e5d393b-e8b9-4cc2-9af9-49a8e788f999_mirnaseq_gdc_realn.bam 356038430 BAM harmonized CPTAC3 ea7ee412-e9cc-4cb7-a7dd-063f3123d527 0946dea241955bfed519700cb0893435 {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_b6b31f2c.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.chimeric.gdc_realn.bam 94514545 BAM chimeric harmonized CPTAC3 34a16e12-056f-4c8d-948f-6873571049db 9e5633c551a4fcc3e6033cb73767d34a {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_b6b31f2c.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.genomic.gdc_realn.bam 7190867923 BAM genomic harmonized CPTAC3 e57f6056-3f91-43d7-928e-92e204e88aa0 b78bdc723a3f79fdbcd2d76d3aee41da {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_b6b31f2c.RNA-Seq.S18_L005_R1.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3375429210 FASTQ S18_L005_R1 unaligned CPTAC3 2ac76f97-64f6-4a49-9e87-9ec850b6c55e 5d6c45a89c9362b7c2bc0733b3233710 {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_b6b31f2c.RNA-Seq.S18_L005_R2.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 3945741454 FASTQ S18_L005_R2 unaligned CPTAC3 5aee2bb7-8d0c-4980-b9df-40433e73cc3f bfcf7c8f719fba82d6feabcd5b7a29ac {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00149.DUP_b6b31f2c.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.transcriptome.gdc_realn.bam 10169109557 BAM transcriptome harmonized CPTAC3 7ced6022-57a1-4a87-a670-d654d311d514 1492d75c3f50caac3d75b54199adc6ee {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00149.MethArray.Green.A C3N-00149 CCRCC Methylation_Array tissue_normal CPT0084590009 203027390029_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2793cf05-30f8-4d1b-829d-509897c0d575 85e107535ad64b642b89eb144fa8b80d {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.MethArray.Green.T C3N-00149 CCRCC Methylation_Array tumor CPT0084560006 202178770079_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 80169744-b1d4-4c40-9866-0e729f87393b 4b4b05eb4a7d58b8ef9e43522baeaca0 {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor"} -C3N-00149.MethArray.Red.A C3N-00149 CCRCC Methylation_Array tissue_normal CPT0084590009 203027390029_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 c237d6fd-ff1b-452d-9f43-487d768ac621 a7919a5778cdf2c9116267ed6fdd99b2 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.MethArray.Red.T C3N-00149 CCRCC Methylation_Array tumor CPT0084560006 202178770079_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 f1603619-a19a-4ee4-bbd3-886751f75e87 401217fc35847fed9b171d454ee9902a {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor"} -C3N-00149.miRNA-Seq.A.hg38 C3N-00149 CCRCC miRNA-Seq tissue_normal CPT0084590006 1ead3637-2a71-456d-b24f-46da4fb3a548_mirnaseq_gdc_realn.bam 214076525 BAM harmonized CPTAC3 4d7eea8c-4797-4b26-9e1b-af52e9fd56d2 c6978a2caed8af7708a0742a19c7a55b {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.miRNA-Seq.S28_L002_R1.A C3N-00149 CCRCC miRNA-Seq tissue_normal CPT0084590006 181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L002_R1_001.unaln.bam 191321196 BAM S28_L002_R1 unaligned CPTAC3 e87ec9ab-d4df-4060-bf22-ecebd32049f3 f5bb1b76a4eee3ab1fe799fc807ab8b7 {"aliquot_tag": "ALQ_8bd3369c", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.miRNA-Seq.S47_L002_R1.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084560009 181113_UNC31-K00269_0164_AH23NNBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 244767996 BAM S47_L002_R1 unaligned CPTAC3 372f3c62-16b3-4c5c-8f61-3ec462e46012 70027cabb8b7888056fd15df9d15cecb {"aliquot_tag": "ALQ_993cbcdc", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084560009 f7325567-72f5-4bfd-9092-8d1a694ad776_mirnaseq_gdc_realn.bam 273626726 BAM harmonized CPTAC3 db0418ce-4ae3-452a-9357-cc869c1599a5 095fea1800d388260770fa9b1126c763 {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor"} -C3N-00149.RNA-Seq.chimeric.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.chimeric.gdc_realn.bam 54032070 BAM chimeric harmonized CPTAC3 4c9bca31-2d25-4626-a02f-dbf0c8dd2406 67ab61d09741bd68a847596ad9829592 {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.chimeric.gdc_realn.bam 40233606 BAM chimeric harmonized CPTAC3 d70c6e68-c49a-4367-acda-9061fcf66de8 c68857fe7e1ee1234fc658bd464dd193 {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor"} -C3N-00149.RNA-Seq.genomic.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.genomic.gdc_realn.bam 5839944203 BAM genomic harmonized CPTAC3 7b8f8c25-340e-4331-9d9c-dc7a638ed81f 0a59d7b672c72b685b261c0c6e4fbf0c {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.genomic.gdc_realn.bam 11332026360 BAM genomic harmonized CPTAC3 0dffe6f5-f453-4dda-b54e-3dd33d8c550b 2967bc8d356bfdd385588fd5f2ba2824 {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor"} -C3N-00149.RNA-Seq.S1_L007_R1.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R1_001.fastq.gz 4478859396 FASTQ S1_L007_R1 unaligned CPTAC3 32f8484e-8802-4c31-9950-0c5003ee0a54 cb73225d00c5a819ce838fa57a9c2686 {"aliquot_tag": "ALQ_993cbcdc", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.RNA-Seq.S1_L007_R2.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R2_001.fastq.gz 5047149306 FASTQ S1_L007_R2 unaligned CPTAC3 2ee5d97a-9a01-41f0-8211-bfd983276c3f 7df1e6f32d2861eb15fe601a0f145f61 {"aliquot_tag": "ALQ_993cbcdc", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00149.RNA-Seq.S5_L008_R1.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R1_001.fastq.gz 2946131294 FASTQ S5_L008_R1 unaligned CPTAC3 81baf6a5-a453-415f-be76-609893ec38ac b4f84646c4b41cf548282e99561d9c73 {"aliquot_tag": "ALQ_8bd3369c", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.RNA-Seq.S5_L008_R2.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R2_001.fastq.gz 3120262615 FASTQ S5_L008_R2 unaligned CPTAC3 40b15200-8776-4170-a2e0-aebec6f52f39 c5d203825a9993416042b12c79b7dab7 {"aliquot_tag": "ALQ_8bd3369c", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.RNA-Seq.transcriptome.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.transcriptome.gdc_realn.bam 7682964490 BAM transcriptome harmonized CPTAC3 544e1bfc-ead9-4c51-af15-ef615435295d 113d4c770ae8f0084bad70632a058b53 {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.transcriptome.gdc_realn.bam 12492630541 BAM transcriptome harmonized CPTAC3 5336785e-e8a7-476b-930e-38d5143519bb a9abc7ccd634b7da8c200f78aa9f4aab {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor"} -C3N-00149.scRNA-Seq.S2_L001_R1.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R1_001.fastq.gz 5897874286 FASTQ S2_L001_R1 unaligned CPTAC3 b0708658-a00f-4c9a-9409-4c76babfe4d4 53b2ea1dfe2a5df9ae3af2529aabc54c {"aliquot_tag": "ALQ_daede9d1", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.scRNA-Seq.S2_L001_R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R2_001.fastq.gz 20498978988 FASTQ S2_L001_R2 unaligned CPTAC3 87c9c71c-1d8a-4664-b2ae-e59c22529c31 fee2654b3f2700541a387dd079f28af8 {"aliquot_tag": "ALQ_daede9d1", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00149.scRNA-Seq.S2_L003_R1.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R1_001.fastq.gz 5393333992 FASTQ S2_L003_R1 unaligned CPTAC3 003d9012-1a02-4cb3-ac51-eec00edf4173 9f779d2ce860f1c718a2aa4beeb7e9f6 {"aliquot_tag": "ALQ_60f26483", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.scRNA-Seq.S2_L003_R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R2_001.fastq.gz 18493130295 FASTQ S2_L003_R2 unaligned CPTAC3 9a43af8f-0bc6-4248-a079-bd5cffaec59d f3433c19bcde63f5e320a18db6404bcf {"aliquot_tag": "ALQ_60f26483", "sample": "S2", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00149.scRNA-Seq.S3_L001_R1.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R1_001.fastq.gz 6764990910 FASTQ S3_L001_R1 unaligned CPTAC3 7a89329f-21cf-4a5a-a462-e818c53608c3 e6cc4803d729e5e77bcf8858572261b5 {"aliquot_tag": "ALQ_dfc2dae2", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00149.scRNA-Seq.S3_L001_R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R2_001.fastq.gz 23395672432 FASTQ S3_L001_R2 unaligned CPTAC3 1e87f1a6-aad1-4280-b951-9516931886e4 f2ec5117b63202cfd7747f8ff1088ae7 {"aliquot_tag": "ALQ_dfc2dae2", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00149.WGS.A C3N-00149 CCRCC WGS tissue_normal CPT0084590009 CPT0084590009.WholeGenome.RP-1303.bam 65199872615 BAM aligned CPTAC3 1fdcbfca-3e89-4f14-ad23-ce75a9e988b5 0d0bc062e601b074ea98b77af63d84c2 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.WGS.A.hg38 C3N-00149 CCRCC WGS tissue_normal CPT0084590009 c1c83894-a954-4e46-a807-5bbfd8b63134_wgs_gdc_realn.bam 95630791325 BAM harmonized CPTAC3 07b25196-257f-4cc6-8e26-03b8bee7bae8 0103ebe2640517b605d7d554852ae431 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.WGS.N C3N-00149 CCRCC WGS blood_normal CPT0085310002 CPT0085310002.WholeGenome.RP-1303.bam 77407443278 BAM aligned CPTAC3 c5562b54-6f0c-49ec-8792-db4288d2680d a37dfd27fdd195a1ef585537e757eb2f {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00149.WGS.N.hg38 C3N-00149 CCRCC WGS blood_normal CPT0085310002 59f6a8d8-d2ee-44ae-8a9d-473c5812c66a_gdc_realn.bam 118031106667 BAM harmonized CPTAC3 62bf4b64-a1be-48b6-88b5-f96f801f0cdf 751275faf85534dfa0d6ab296626615a {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00149.WGS.T C3N-00149 CCRCC WGS tumor CPT0084560006 CPT0084560006.WholeGenome.RP-1303.bam 62584003228 BAM aligned CPTAC3 82c89c34-eae2-4ff6-a647-cf84a90f68ac b7fe41d66590acb3447fe4de9eb4c34d {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor"} -C3N-00149.WGS.T.hg38 C3N-00149 CCRCC WGS tumor CPT0084560006 449ffb6b-9f0e-4cc3-8632-720344de67ca_gdc_realn.bam 93567158837 BAM harmonized CPTAC3 bd902c1d-440a-4e2f-8851-206fec86cb62 77e2c9582c9d017fc28b2f9fbbca20c0 {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor"} -C3N-00149.WXS.A C3N-00149 CCRCC WXS tissue_normal CPT0084590009 CPT0084590009.WholeExome.RP-1303.bam 49771507926 BAM aligned CPTAC3 0a34dd42-aa5e-4994-a52e-ee2f291025ee 0fe9b04c88c954d057ee2e1040055562 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.WXS.A.hg38 C3N-00149 CCRCC WXS tissue_normal CPT0084590009 c1c83894-a954-4e46-a807-5bbfd8b63134_wxs_gdc_realn.bam 66794298434 BAM harmonized CPTAC3 f67c2c25-b27f-4082-89aa-8f85d5b3a03a 7c8ae2d8a35fa9ce2b710e71cca79452 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00149.WXS.N C3N-00149 CCRCC WXS blood_normal CPT0085310002 CPT0085310002.WholeExome.RP-1303.bam 21291384780 BAM aligned CPTAC3 b860d861-9bb1-44bc-bca0-f1ca9822e36e ccdce75db9247dae3f5cbb665f5e0887 {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00149.WXS.N.hg38 C3N-00149 CCRCC WXS blood_normal CPT0085310002 59f6a8d8-d2ee-44ae-8a9d-473c5812c66a_gdc_realn.bam 28851974478 BAM harmonized CPTAC3 41500ac9-600c-48df-959c-c9b85224b648 b87324d6f9b8991f9bff4b8a78dbd749 {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00149.WXS.T C3N-00149 CCRCC WXS tumor CPT0084560006 CPT0084560006.WholeExome.RP-1303.bam 21710038549 BAM aligned CPTAC3 4c623fb5-b769-4544-bf49-f76155fe2d55 d330785e328c0456dbc976b4f1af3c4c {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor"} -C3N-00149.WXS.T.hg38 C3N-00149 CCRCC WXS tumor CPT0084560006 449ffb6b-9f0e-4cc3-8632-720344de67ca_gdc_realn.bam 29971126713 BAM harmonized CPTAC3 601c9136-7233-4309-b694-ea5eeaa9e2b4 557b33798907fab2dc0014695b37993e {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_27c08b1e.miRNA-Seq.S15_L001_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066510012 200526_UNC32-K00270_0248_BHH7WFBBXY_TAATCG_S15_L001_R1_001.unaln.bam 311456281 BAM S15_L001_R1 unaligned CPTAC3 8dc713a6-31b1-40ac-86b3-1738601a18a6 414b7f2d583103180080e98d6e6634f4 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_27c08b1e.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066510012 04668f78-78f9-4f0a-b521-190e1e7f7bad_mirnaseq_gdc_realn.bam 347299794 BAM harmonized CPTAC3 e7003944-a074-40fe-828f-2b1717697072 4995d6cb35b8277a8f09d0adfbfa02b4 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_27c08b1e.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.chimeric.gdc_realn.bam 56120761 BAM chimeric harmonized CPTAC3 ec49241b-8c7d-4c13-a61e-d84e036ff42a 0525e672e62bbcffe0d61c813be08f19 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_27c08b1e.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.genomic.gdc_realn.bam 10589503435 BAM genomic harmonized CPTAC3 1f718e87-0124-4f98-a072-7c4d6fa2b6ad 0b3c9a8a3ca041bc5f695ba020e96dc6 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_27c08b1e.RNA-Seq.S2_L001_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4912531183 FASTQ S2_L001_R1 unaligned CPTAC3 f2399c07-4ee4-4777-8edb-88a422f1c979 b366dbd2baf5bf0c3535b586a9c96de2 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_27c08b1e.RNA-Seq.S2_L001_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5975142522 FASTQ S2_L001_R2 unaligned CPTAC3 9fb17392-f2d0-4d12-8503-aab183708848 d419f5f4584027e9d3fffbd6af866c02 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_27c08b1e.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.transcriptome.gdc_realn.bam 14223420129 BAM transcriptome harmonized CPTAC3 93b8dd80-0acf-4bbd-84ee-30f290a01d69 14df7202a828423244066b13baf91600 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_4d657f6.miRNA-Seq.S43_L005_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066500006 200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L005_R1_001.unaln.bam 262975676 BAM S43_L005_R1 unaligned CPTAC3 c71d4bcc-731e-45d1-8bd5-9a66047e9c5a e8789e2699ad3bdcc1aebeff66c5fa11 {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_4d657f6.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066500006 20b5307e-9a13-41e8-943a-52f29a9cefc5_mirnaseq_gdc_realn.bam 297271324 BAM harmonized CPTAC3 28662506-2196-4c57-bd9f-38cee3e4d09f 7814720285895f2a1c8b15bc5597ff7c {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_4d657f6.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.chimeric.gdc_realn.bam 225870739 BAM chimeric harmonized CPTAC3 f3df2ac6-6aa8-4edd-a66d-7c3ac85d22ee b5d8867e54f810b14f5a198c799e2ef5 {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_4d657f6.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.genomic.gdc_realn.bam 8326027817 BAM genomic harmonized CPTAC3 bb4dc287-edd9-4ebf-aef8-7b0568a86464 e29dffe7948d3d9f0f531587785c1c2a {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_4d657f6.RNA-Seq.S38_L006_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R1_001.fastq.gz 3969540349 FASTQ S38_L006_R1 unaligned CPTAC3 fc944036-cd67-4263-b94e-cec2d6eaa30f 4527f874d076789171da4e5c0d5a390a {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_4d657f6.RNA-Seq.S38_L006_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R2_001.fastq.gz 4592438801 FASTQ S38_L006_R2 unaligned CPTAC3 28c45fe7-ca60-4a75-91dc-7132d592c14d 6883db94e572124efc15d2f9cc37390d {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_4d657f6.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.transcriptome.gdc_realn.bam 10005109528 BAM transcriptome harmonized CPTAC3 f039f3b3-bd29-4721-813c-75312d20fd03 0def36132b3e5a9f7868176894faddc0 {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_5225fbb3.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066490009 204367490056_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 45e98501-5d86-48d1-ab41-e3129c5f6f05 aba405babda0fad2dc65f0860d14b0a6 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_5225fbb3.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066490009 204367490056_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 85b2fa7a-fed3-4cf6-a57c-2e1e7b02821b de930d19ebc5ecd406e1002dc1870281 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_5225fbb3.WGS.T C3N-00150 CCRCC WGS tumor CPT0066490009 CPT0066490009.WholeGenome.RP-2158.bam 25579342308 BAM aligned CPTAC3 f753e393-0d7f-4ac0-b7fd-65d5e4b18be5 b2b7ff3f527f8f81b52986b871607885 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_5225fbb3.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066490009 32d6507c-79d4-49ff-bf6a-4d6704974d8f_wgs_gdc_realn.bam 77853261833 BAM harmonized CPTAC3 68fe5fab-4ba6-4408-aa04-94cec8f0f05c 6136ab2ded923ed441f72d1cb69c59f7 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_5225fbb3.WXS.T C3N-00150 CCRCC WXS tumor CPT0066490009 CPT0066490009.WholeExome.RP-1303.bam 17850702976 BAM aligned CPTAC3 cf86588f-82ed-437d-b52b-f7abb59b3f08 3cfb110076dfe148654aae4c5c9542c7 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_5225fbb3.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066490009 32d6507c-79d4-49ff-bf6a-4d6704974d8f_wxs_gdc_realn.bam 24499994605 BAM harmonized CPTAC3 e37e27a3-e67b-47bd-9786-a95f1eedc029 da7e8dccd5f0b4ef5e390c9e644f2e8b {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_94694a67.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066500009 204367490030_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 86776df8-1b6a-4832-a1bc-1a5d2bfa3b27 e5696322c176c97e630a4c3c745f13e1 {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_94694a67.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066500009 204367490030_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 9a5e72fb-9938-48ee-b44f-d1833aafa011 dd88da2ef83f69440375115e44a5c69b {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_94694a67.WGS.T C3N-00150 CCRCC WGS tumor CPT0066500009 CPT0066500009.WholeGenome.RP-2158.bam 21076245505 BAM aligned CPTAC3 cee09d0b-70e5-4a12-9985-a2d447e2e144 aa21a6ae3ea0cf041f11c303a565c6fd {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_94694a67.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066500009 630d1d67-fa77-4962-953d-f09f20109b06_wgs_gdc_realn.bam 63157516252 BAM harmonized CPTAC3 d738ca8a-876b-45f8-ac0a-d9ba0579a901 d721c4a2460c4964b2b3b410cd1c2e33 {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_94694a67.WXS.T C3N-00150 CCRCC WXS tumor CPT0066500009 CPT0066500009.WholeExome.RP-1303.bam 18542137804 BAM aligned CPTAC3 de600cc0-4df1-436d-ad6e-564908d4d1aa e11adbed131377d25e1cedff4a0267c9 {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_94694a67.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066500009 630d1d67-fa77-4962-953d-f09f20109b06_wxs_gdc_realn.bam 24358009056 BAM harmonized CPTAC3 bd3c79bc-2e0c-4c7c-a856-3f05eaba61ae 2eec4a6621351c1e64f16715f0a2eb4c {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_c29ae622.miRNA-Seq.S44_L005_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066490006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAGCTT_S44_L005_R1_001.unaln.bam 380182361 BAM S44_L005_R1 unaligned CPTAC3 f8047bac-2075-434f-954a-1daab31cb4a0 b5d2cc184bc90c132d6f0f08ca9b6167 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_c29ae622.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066490006 bef625e2-5d1f-4877-bd4a-bcb9fe5eee18_mirnaseq_gdc_realn.bam 414646609 BAM harmonized CPTAC3 d482ffb3-ef70-4e7b-a2b2-421c7d65f4f2 db3a465a404df754a9c727c1c76d93b9 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_c29ae622.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.chimeric.gdc_realn.bam 334977588 BAM chimeric harmonized CPTAC3 55b7e1bf-740d-4cd8-8143-f65d8b29cccd 1a626db83f367fcf60dfab5919001349 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_c29ae622.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.genomic.gdc_realn.bam 10892186888 BAM genomic harmonized CPTAC3 1a3bc034-07b5-4264-8a0f-c1b948eeac2e 07222e4e5d23a3c27ad0fcaba86dfeb6 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_c29ae622.RNA-Seq.S37_L006_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R1_001.fastq.gz 4987071225 FASTQ S37_L006_R1 unaligned CPTAC3 781182a7-69b1-48db-bdc5-3857e93951b8 e00d51622ef0a39c8de847139d4bc9dc {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_c29ae622.RNA-Seq.S37_L006_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R2_001.fastq.gz 5833583567 FASTQ S37_L006_R2 unaligned CPTAC3 2e50309f-29d7-44cd-a1aa-4bb6118e5d78 6d373b513ed06ae01b0a01a36e309655 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_c29ae622.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.transcriptome.gdc_realn.bam 14575740355 BAM transcriptome harmonized CPTAC3 e35bf1cc-467a-4ebe-a975-220b988413a6 0cf43735d4e2c3f4aed1cb79a0782cd7 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_de0e5341.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066510008 204367490061_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e78b8b17-bfb6-4bdc-ae5b-19b21216e3db b733d906d8fbed7800248ab392cd3610 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_de0e5341.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066510008 204367490061_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 3152a092-f7eb-4fd9-a32c-b9b073974a02 eb95d8a113eee55f5b74da4ce906e3df {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_de0e5341.WGS.T C3N-00150 CCRCC WGS tumor CPT0066510008 CPT0066510008.WholeGenome.RP-2158.bam 24517643022 BAM aligned CPTAC3 9daa8236-2c64-4433-8e4e-fd39952413c9 84e3103125c230ccc64434622f235e7f {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_de0e5341.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066510008 90efd267-01a3-4c8d-ac68-52f973a6f027_wgs_gdc_realn.bam 73089122932 BAM harmonized CPTAC3 67d54c7f-c6eb-41eb-8c9e-0f89abbb6c18 c03532780c28e1d96021323f2850d098 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_de0e5341.WXS.T C3N-00150 CCRCC WXS tumor CPT0066510008 CPT0066510008.WholeExome.RP-1303.bam 22419000430 BAM aligned CPTAC3 e7c16a79-ba56-43ca-a710-d496a9c05dd3 cb7297a7f3450c563b22a9cc5155ccb5 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.DUP_de0e5341.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066510008 90efd267-01a3-4c8d-ac68-52f973a6f027_wxs_gdc_realn.bam 31542632457 BAM harmonized CPTAC3 4563ea6d-2b2f-448f-aa77-9b1bcb278a72 98c65943fc00086341a451f7a8f6a719 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00150.MethArray.Green.A C3N-00150 CCRCC Methylation_Array tissue_normal CPT0066520009 203027390029_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8a9a7add-83a3-4366-93ef-fe4c6af83dbf 45743cc909070ab836fb16f8b8f0227c {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066480009 202184990008_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 fd558bdd-3f77-4bd6-b034-47c8baba30aa 163242d671ef3dd348ad2c8d294b2680 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor"} -C3N-00150.MethArray.Red.A C3N-00150 CCRCC Methylation_Array tissue_normal CPT0066520009 203027390029_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 69b4770c-6aa2-47d7-af17-3c9c464ae0b8 f1522dded24f5e61a29bfb4a9c19247a {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066480009 202184990008_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 05122d3c-3a39-4287-9fbf-7da47391e803 0137cd03410b0ad7bcf3180efebb187e {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor"} -C3N-00150.miRNA-Seq.A.hg38 C3N-00150 CCRCC miRNA-Seq tissue_normal CPT0066520006 cee1898f-c2d5-4bd0-9db0-0dc34032f890_mirnaseq_gdc_realn.bam 229763349 BAM harmonized CPTAC3 ef5bda08-8048-4606-b305-c70a6880fce9 8d5aa791e93900c776de33982811b19a {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.miRNA-Seq.S12_L003_R1.A C3N-00150 CCRCC miRNA-Seq tissue_normal CPT0066520006 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L003_R1_001.unaln.bam 207117983 BAM S12_L003_R1 unaligned CPTAC3 3898782d-7339-45da-b974-7d614b6b2bb0 6362662abeaa489d810c7272c7e23f3e {"aliquot_tag": "ALQ_7e160496", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.miRNA-Seq.S22_L001_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066480006 181113_UNC31-K00269_0164_AH23NNBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 198592751 BAM S22_L001_R1 unaligned CPTAC3 53605880-e082-4afe-bd6a-c36f38cca0a1 daaaa809d41bbe0e11b48dc12648c773 {"aliquot_tag": "ALQ_fffacf92", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066480006 85ba3a7a-834d-40f0-bda4-1d86dd8710ae_mirnaseq_gdc_realn.bam 222265685 BAM harmonized CPTAC3 4c579db4-55ac-4a70-a0f7-e0cc08f9d18f 94c439a1f42dcd717f89b4923f833b44 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor"} -C3N-00150.RNA-Seq.chimeric.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.chimeric.gdc_realn.bam 61826855 BAM chimeric harmonized CPTAC3 43c0a6af-99bb-46e7-9536-eba614f1f89f 905537d46cbc92dff17236a14a8eb99b {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.chimeric.gdc_realn.bam 20553246 BAM chimeric harmonized CPTAC3 e29b4a30-fb93-4871-bf5e-536866e1bbbd 3c15255b4b21e4533df205d473803722 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor"} -C3N-00150.RNA-Seq.genomic.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.genomic.gdc_realn.bam 7546618463 BAM genomic harmonized CPTAC3 a3d92754-0b98-43f7-8c89-270685a51488 4a417e6dcfa38e77424b0cd2828a3684 {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.genomic.gdc_realn.bam 6642670462 BAM genomic harmonized CPTAC3 1901d326-11d7-4781-8656-349c6dab259d f98f4e4cf4a027340023e62e9c726748 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor"} -C3N-00150.RNA-Seq.S12_L003_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3249194491 FASTQ S12_L003_R1 unaligned CPTAC3 150293f5-6224-4de0-a778-9206a16aa41a 63c77863adf613bbd315a4a2769c045d {"aliquot_tag": "ALQ_fffacf92", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00150.RNA-Seq.S12_L003_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 3523187235 FASTQ S12_L003_R2 unaligned CPTAC3 dcc3c017-ead2-4264-89f0-6b97c01e4005 d99e7bd9f101002c80be5aa9588db824 {"aliquot_tag": "ALQ_fffacf92", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00150.RNA-Seq.S14_L004_R1.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R1_001.fastq.gz 3764973522 FASTQ S14_L004_R1 unaligned CPTAC3 48645880-9721-4027-8168-48b937146d8f 746ce36fc96763a2a11462668928f222 {"aliquot_tag": "ALQ_7e160496", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.RNA-Seq.S14_L004_R2.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R2_001.fastq.gz 4017114783 FASTQ S14_L004_R2 unaligned CPTAC3 d615fdfa-8133-421e-b1e7-fb8fcb83b92a f19d6348379f5fddacccf3edadb98abf {"aliquot_tag": "ALQ_7e160496", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.RNA-Seq.transcriptome.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.transcriptome.gdc_realn.bam 8987991835 BAM transcriptome harmonized CPTAC3 0a4e8d53-f940-42f2-b170-9bf03eb00333 2470d03e9e4e6ab9c2d6665511bb1c7b {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.transcriptome.gdc_realn.bam 9681514596 BAM transcriptome harmonized CPTAC3 5f873cce-c0fb-49d2-89b7-088458f4b0ee b8c88dfd83bebc39bf685ab383633a17 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor"} -C3N-00150.WGS.A C3N-00150 CCRCC WGS tissue_normal CPT0066520009 CPT0066520009.WholeGenome.RP-1303.bam 65063083711 BAM aligned CPTAC3 b5af388d-3f66-489e-93d0-472c28dd4e4d dd9320a2bb3e482f7da22ba3ea6ac645 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.WGS.A.hg38 C3N-00150 CCRCC WGS tissue_normal CPT0066520009 342d2307-9763-4970-8a5e-98b220c02b87_wgs_gdc_realn.bam 95283042557 BAM harmonized CPTAC3 5a6cfbde-5ade-43be-aec7-22391bef5691 ed5432f8697a76802881e391ef1b20a7 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.WGS.N C3N-00150 CCRCC WGS blood_normal CPT0071650002 CPT0071650002.WholeGenome.RP-1303.bam 90619661921 BAM aligned CPTAC3 99ba5bf9-4f61-442b-b652-20194401747c 386b1a393587044d6018a17be70ba21e {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal"} -C3N-00150.WGS.N.hg38 C3N-00150 CCRCC WGS blood_normal CPT0071650002 3810cfb3-a774-44ea-9122-965669d70781_gdc_realn.bam 141024358152 BAM harmonized CPTAC3 80638538-185f-457d-95bd-4f5e3e47969c 6cee8efc646c5d4e85e9f5e30f9771b4 {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal"} -C3N-00150.WGS.T C3N-00150 CCRCC WGS tumor CPT0066480009 CPT0066480009.WholeGenome.RP-1303.bam 68716757157 BAM aligned CPTAC3 29a197b9-6a1e-4ed7-907e-def7d1586a59 0ed85d6723ee0af8df09c30d94d0dea4 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor"} -C3N-00150.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066480009 ff4668a7-c6a6-42a8-b0a2-87e2ef2e888a_gdc_realn.bam 102182445437 BAM harmonized CPTAC3 a88d547b-a762-45dd-bd1d-aad430db108f adae96942ff998da1ec6b0df1f292b96 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor"} -C3N-00150.WXS.A C3N-00150 CCRCC WXS tissue_normal CPT0066520009 CPT0066520009.WholeExome.RP-1303.bam 34406355448 BAM aligned CPTAC3 d446c485-a192-4c30-8e35-d7372eb84ec5 1617e63ca13f49b90617ae65502ed3c8 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.WXS.A.hg38 C3N-00150 CCRCC WXS tissue_normal CPT0066520009 342d2307-9763-4970-8a5e-98b220c02b87_wxs_gdc_realn.bam 46159207692 BAM harmonized CPTAC3 c52d3c5e-06ad-430e-b25d-cb0a8292c726 4d9134975c7accc3c172489b686e3a12 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00150.WXS.N C3N-00150 CCRCC WXS blood_normal CPT0071650002 CPT0071650002.WholeExome.RP-1303.bam 25392133523 BAM aligned CPTAC3 b091ec5c-6d38-4749-b0fb-16a0d4122e50 afbcbf211b84d0d39f26c946685e4eb3 {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal"} -C3N-00150.WXS.N.hg38 C3N-00150 CCRCC WXS blood_normal CPT0071650002 3810cfb3-a774-44ea-9122-965669d70781_gdc_realn.bam 34453307020 BAM harmonized CPTAC3 33187984-635f-4440-b9d6-5798acf8df20 bfe33da82d8e38bbe9f82ef5f9cbf05e {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal"} -C3N-00150.WXS.T C3N-00150 CCRCC WXS tumor CPT0066480009 CPT0066480009.WholeExome.RP-1303.bam 32818808115 BAM aligned CPTAC3 5531adb4-f725-43ea-8dc8-27d7340bb60b bc6ef7c16629ba35835221ae3b088bac {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor"} -C3N-00150.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066480009 ff4668a7-c6a6-42a8-b0a2-87e2ef2e888a_gdc_realn.bam 45301042702 BAM harmonized CPTAC3 b2863f3c-46e2-44e6-9669-702996e320b1 cf00264e536b00a0b2803cd047bdc758 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor"} -C3N-00151.MethArray.Green.T C3N-00151 UCEC Methylation_Array tumor CPT0066620006 202178770100_R05C01_Grn.idat 13676233 IDAT Green NA CPTAC3 631b2ed0-4fea-4ff5-af59-a9795416b0d1 029d3501e375528a7973aa3b806fa7ee {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor"} -C3N-00151.MethArray.Red.T C3N-00151 UCEC Methylation_Array tumor CPT0066620006 202178770100_R05C01_Red.idat 13676233 IDAT Red NA CPTAC3 46327381-ab34-455c-af44-9fc1dfa538ba 48f8672979d0a5862bc8c38c9ef10ba2 {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor"} -C3N-00151.miRNA-Seq.S3_L008_R1.T C3N-00151 UCEC miRNA-Seq tumor CPT0066620009 181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L008_R1_001.unaln.bam 241179103 BAM S3_L008_R1 unaligned CPTAC3 0915d914-e871-4ed1-9b1b-b2e56de06011 594f56707dab67afcb8c41e62b34a52c {"aliquot_tag": "ALQ_683d6ba9", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00151.miRNA-Seq.T.hg38 C3N-00151 UCEC miRNA-Seq tumor CPT0066620009 dbd51823-d415-4d6c-97eb-abec7b6349ac_mirnaseq_gdc_realn.bam 265027554 BAM harmonized CPTAC3 b97d2cb6-f9ab-48a3-90c2-a3de52bba1d9 7fa9959f3d21d3b67cd7a84884290f3c {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.chimeric.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.chimeric.gdc_realn.bam 158602802 BAM chimeric harmonized CPTAC3 b8145313-599a-4b70-93e7-80b86c154875 813c26758d554d33e657a72308e7d83d {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.chimeric.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.chimeric.gdc_realn.bam 224551563 BAM chimeric harmonized CPTAC3 99a19f59-2430-489e-bf07-61d424947fa7 4b9bf38cd44d99e4dec3758ae67f74ad {"aliquot_tag": "ALQ_2071580f", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.genomic.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.genomic.gdc_realn.bam 7512740867 BAM genomic harmonized CPTAC3 bd5ab632-9bd8-4802-b2b4-54a0a0a19c78 dad910c1704fc84d35217a2f0a562ce5 {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.genomic.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.genomic.gdc_realn.bam 10274695873 BAM genomic harmonized CPTAC3 316e7eaa-fbd7-40a5-8dbe-193793d60d4d 9dcbb4563d570e963689f946c2c585ad {"aliquot_tag": "ALQ_2071580f", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.S48_R1.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R1_001.fastq.gz 6446023082 FASTQ S48_R1 unaligned CPTAC3 b6ce1f72-519b-4d84-9093-38a962e3a884 b8d7fbf9ba4dc8e659636625c977f88a {"aliquot_tag": "ALQ_2071580f", "sample": "S48", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.S48_R2.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R2_001.fastq.gz 6727311491 FASTQ S48_R2 unaligned CPTAC3 6c2c61fe-b9c9-4ce6-9ecc-4a114c1fa98d ff42e27c72d4994c73557ec99d4d7e54 {"aliquot_tag": "ALQ_2071580f", "sample": "S48", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.S8_L008_R1.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R1_001.fastq.gz 3567796408 FASTQ S8_L008_R1 unaligned CPTAC3 325918b9-3905-49ff-b4f6-f76a88e30301 f4f895a1eb8577aeeaeb3a2f8a55a56f {"aliquot_tag": "ALQ_683d6ba9", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.S8_L008_R2.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R2_001.fastq.gz 3831274575 FASTQ S8_L008_R2 unaligned CPTAC3 31961972-9d79-45d4-a53c-b80875dd8e9a 31eb693c4ba38ee3aa23d419d2884f1f {"aliquot_tag": "ALQ_683d6ba9", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.transcriptome.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.transcriptome.gdc_realn.bam 10241342155 BAM transcriptome harmonized CPTAC3 bf4b9710-91a6-4869-9858-e8e9f0a88599 065fcd5f98d7bdc6cd64a581ea7a8d91 {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor"} -C3N-00151.RNA-Seq.transcriptome.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.transcriptome.gdc_realn.bam 4837486849 BAM transcriptome harmonized CPTAC3 bed824a3-b650-4805-b837-2ce194a77666 d02d8939c476771dc9df93819c868df1 {"aliquot_tag": "ALQ_2071580f", "gdc_sample_type": "Primary Tumor"} -C3N-00151.WGS.N C3N-00151 UCEC WGS blood_normal CPT0071660002 CPT0071660002.WholeGenome.RP-1303.bam 80274701416 BAM aligned CPTAC3 094a6259-09f3-4465-8335-12ee260b40ee 3b9b8454c652b9320db160f1b28440db {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00151.WGS.N.hg38 C3N-00151 UCEC WGS blood_normal CPT0071660002 8252f908-a17d-475a-a94f-88043f2bf9da_gdc_realn.bam 120591713328 BAM harmonized CPTAC3 c8094cb6-306f-499b-861c-54292228468d accf6b2ef597bbf7e3fc28a6a679fa1c {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00151.WGS.T C3N-00151 UCEC WGS tumor CPT0066620006 CPT0066620006.WholeGenome.RP-1303.bam 72344722974 BAM aligned CPTAC3 e6d5f29d-5ff0-40d9-9ef0-ca925ad2f7f2 c59b66e0c1ba660d184692511903c26a {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor"} -C3N-00151.WGS.T.hg38 C3N-00151 UCEC WGS tumor CPT0066620006 73dee08e-268f-4107-b55d-ee1906f078e6_gdc_realn.bam 111137112775 BAM harmonized CPTAC3 fc38dc22-853e-41e9-a8c6-ab43e06b3179 42fd797ce86930026406ad533a2cdcbd {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor"} -C3N-00151.WXS.N C3N-00151 UCEC WXS blood_normal CPT0071660002 CPT0071660002.WholeExome.RP-1303.bam 28796809302 BAM aligned CPTAC3 9b86c86a-b2db-4215-b4d3-b244b3ec6784 c378dcdbbadda8f1be16c6e8c23edf25 {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00151.WXS.N.hg38 C3N-00151 UCEC WXS blood_normal CPT0071660002 8252f908-a17d-475a-a94f-88043f2bf9da_gdc_realn.bam 40967643065 BAM harmonized CPTAC3 94cf10bc-d882-429b-8083-bd4123f3a4bc 14905b438a1f9defdeb59367108ad04b {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00151.WXS.T C3N-00151 UCEC WXS tumor CPT0066620006 CPT0066620006.WholeExome.RP-1303.bam 29265572612 BAM aligned CPTAC3 719ccc63-3efb-4627-99f8-b227ad0c9a0d 88c1409906e7128690df0fd22fde26e8 {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor"} -C3N-00151.WXS.T.hg38 C3N-00151 UCEC WXS tumor CPT0066620006 73dee08e-268f-4107-b55d-ee1906f078e6_gdc_realn.bam 40816006378 BAM harmonized CPTAC3 5246a7b0-58b3-425b-9c84-dfe8a361fc81 cfcd1614efa117ba6c0b4e1cdc31210f {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor"} -C3N-00154.MethArray.Green.T C3N-00154 CCRCC Methylation_Array tumor CPT0081880006 202184900149_R08C01_Grn.idat 13676256 IDAT Green NA CPTAC3 a813d38c-f89b-4eb6-9287-233def265cfe a2e99027c3cd7e90a2be164b5bed3fc6 {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor"} -C3N-00154.MethArray.Red.T C3N-00154 CCRCC Methylation_Array tumor CPT0081880006 202184900149_R08C01_Red.idat 13676256 IDAT Red NA CPTAC3 93bf1fd7-1278-4420-8a71-3ccb3287c001 e3562b6e2be84e6bb54d56c9c32cc1dd {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor"} -C3N-00154.miRNA-Seq.S19_L003_R1.T C3N-00154 CCRCC miRNA-Seq tumor CPT0081880009 181113_UNC31-K00269_0164_AH23NNBBXY_TACAGC_S19_L003_R1_001.unaln.bam 228566245 BAM S19_L003_R1 unaligned CPTAC3 12e4b7d8-88a0-422a-80f7-55be66d20ba1 dcc54c6eecdff1088f2c3c849c2ffd18 {"aliquot_tag": "ALQ_c8aa3ec4", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00154.miRNA-Seq.T.hg38 C3N-00154 CCRCC miRNA-Seq tumor CPT0081880009 8a3f963a-7409-4b08-ac27-23983fc4566b_mirnaseq_gdc_realn.bam 251573861 BAM harmonized CPTAC3 26370490-ad6b-4efd-afd9-1206189eb91c 628a16e4f5056eaeefb02bcc49d03954 {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor"} -C3N-00154.RNA-Seq.chimeric.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.chimeric.gdc_realn.bam 47162401 BAM chimeric harmonized CPTAC3 8432e478-3d8a-496f-9a36-54bbf47ae4f0 7c77364922c073792c51e5c863b7a923 {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor"} -C3N-00154.RNA-Seq.genomic.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.genomic.gdc_realn.bam 7721721613 BAM genomic harmonized CPTAC3 a26a30b2-ae33-49ce-a4e8-12013f3a51fa a10fcb6287099df695f21fb5cb192cfb {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor"} -C3N-00154.RNA-Seq.S8_L008_R1.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R1_001.fastq.gz 3783739243 FASTQ S8_L008_R1 unaligned CPTAC3 735f980d-a3b0-4b7c-8195-0c43938f77f4 1354384458cffd7954e98b6696c9491b {"aliquot_tag": "ALQ_c8aa3ec4", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00154.RNA-Seq.S8_L008_R2.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R2_001.fastq.gz 4186139953 FASTQ S8_L008_R2 unaligned CPTAC3 77b08e1a-d099-477c-afac-d3ca195a37d5 cbb01d143bc0bb008796a565a9d7f81d {"aliquot_tag": "ALQ_c8aa3ec4", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00154.RNA-Seq.transcriptome.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.transcriptome.gdc_realn.bam 9764868696 BAM transcriptome harmonized CPTAC3 8115c4a0-1845-4ff5-b78e-db1df248b7ff 8ec01000396c35649c149a2230eecf5f {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor"} -C3N-00154.WGS.N C3N-00154 CCRCC WGS blood_normal CPT0085300002 CPT0085300002.WholeGenome.RP-1303.bam 74857063493 BAM aligned CPTAC3 2be58af0-dad5-4eb1-9f46-f249dcf44bfd 7ceb668d4dbfebce16fd9540185cdb68 {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00154.WGS.N.hg38 C3N-00154 CCRCC WGS blood_normal CPT0085300002 2c47a5c2-8f05-4cb1-bc7f-48844c3f0bf4_gdc_realn.bam 115809831209 BAM harmonized CPTAC3 b056990b-61e7-4dda-9f37-77710d888d5f 610fe9220ef0cc73c946e00b0489ac98 {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00154.WGS.T C3N-00154 CCRCC WGS tumor CPT0081880006 CPT0081880006.WholeGenome.RP-1303.bam 76509545320 BAM aligned CPTAC3 1dd8580a-02a7-431f-8460-3cab5a6cd8f5 6330e840b232ae8f8539d17655dc34c0 {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor"} -C3N-00154.WGS.T.hg38 C3N-00154 CCRCC WGS tumor CPT0081880006 884524a7-f4ac-4090-a91f-5cb369657472_gdc_realn.bam 115849720224 BAM harmonized CPTAC3 f37e1097-7505-445a-a160-dbf32d06b89e 711cb106b3da462e807f799cdded6c14 {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor"} -C3N-00154.WXS.N C3N-00154 CCRCC WXS blood_normal CPT0085300002 CPT0085300002.WholeExome.RP-1303.bam 33186379776 BAM aligned CPTAC3 8e2e6f9e-5744-450b-86cc-23daf6adb454 e3a481e498702edc3c8813cba5ee887a {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00154.WXS.N.hg38 C3N-00154 CCRCC WXS blood_normal CPT0085300002 2c47a5c2-8f05-4cb1-bc7f-48844c3f0bf4_gdc_realn.bam 44911493242 BAM harmonized CPTAC3 91200c69-2fd6-45f3-85fc-85b966d6de2f 1ba09002c65c8a6db77a38d5d5965a60 {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00154.WXS.T C3N-00154 CCRCC WXS tumor CPT0081880006 CPT0081880006.WholeExome.RP-1303.bam 30132980665 BAM aligned CPTAC3 555b5a96-481f-4f28-8b7b-f57774d116ad d5a81f723ec4d10b7423e137bd3efcca {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor"} -C3N-00154.WXS.T.hg38 C3N-00154 CCRCC WXS tumor CPT0081880006 884524a7-f4ac-4090-a91f-5cb369657472_gdc_realn.bam 40881738157 BAM harmonized CPTAC3 b17fadf8-5555-45d9-a935-b6a8b16cb1d1 3e220ff1404e6d87fe13495f6af0212b {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor"} -C3N-00155.MethArray.Green.T C3N-00155 UCEC Methylation_Array tumor CPT0104820009 203219650156_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e7851427-b364-4007-88c3-4b8ee54fce40 7bdb96cfa8a4cd5b6faf01e19675b5cc {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor"} -C3N-00155.MethArray.Red.T C3N-00155 UCEC Methylation_Array tumor CPT0104820009 203219650156_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 072b7d1f-e240-4ad0-bce3-c1ac38662282 9ec9abedb196fb87a2d98063e2c302c1 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor"} -C3N-00155.miRNA-Seq.S15_L002_R1.T C3N-00155 UCEC miRNA-Seq tumor CPT0104820006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGTCA_S15_L002_R1_001.unaln.bam 244932224 BAM S15_L002_R1 unaligned CPTAC3 651d6e61-1dce-47a0-9b9a-f5b2474101af dcb20b9a1241e0b1f29f8fae9d356d6e {"aliquot_tag": "ALQ_84031ba5", "sample": "S15", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00155.miRNA-Seq.T.hg38 C3N-00155 UCEC miRNA-Seq tumor CPT0104820006 e0d66cb0-c254-4b50-8a8e-600a97eb22de_mirnaseq_gdc_realn.bam 258528809 BAM harmonized CPTAC3 f0fa7ab9-0f87-4f3b-9007-1e43ce1c6f0e 59e27c949b8f86323b47d5c8803b20ba {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.chimeric.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.chimeric.gdc_realn.bam 38860278 BAM chimeric harmonized CPTAC3 69c37b8a-2e8e-4940-a4f9-06b155bedc82 e92bd1417449c7eab99e64add54012e6 {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.chimeric.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.chimeric.gdc_realn.bam 180949342 BAM chimeric harmonized CPTAC3 b21d3b9e-302a-4ca3-9771-2d771c569ca6 879b912f5224908a16dae9a35c69b239 {"aliquot_tag": "ALQ_6e05a5d1", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.genomic.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.genomic.gdc_realn.bam 11280233141 BAM genomic harmonized CPTAC3 73b146dd-c0dd-4762-892d-3f20276b9ae9 082e1c997568e976c467d2ee56e400fe {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.genomic.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.genomic.gdc_realn.bam 10243535021 BAM genomic harmonized CPTAC3 4720351e-b6dd-48db-9e65-a13aa328601d 30e1b77b155670e6f610d84a32d2ac3e {"aliquot_tag": "ALQ_6e05a5d1", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.S1_L007_R1.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 4605942366 FASTQ S1_L007_R1 unaligned CPTAC3 1dbf7251-4460-46d3-86a7-a0ef00384fbc bcd8866cddb7bb5b0de65629e727df5e {"aliquot_tag": "ALQ_84031ba5", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.S1_L007_R2.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 5038825391 FASTQ S1_L007_R2 unaligned CPTAC3 681382d7-ca49-4599-8133-72cbecbea0fb 8ec5df7442f24f55c9c684c192b8c58d {"aliquot_tag": "ALQ_84031ba5", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.S58_R1.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R1_001.fastq.gz 6589081593 FASTQ S58_R1 unaligned CPTAC3 b8cd98a4-d8a7-49db-a6ab-24da361708ec ddea4cb632feee25e24853e21006a172 {"aliquot_tag": "ALQ_6e05a5d1", "sample": "S58", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.S58_R2.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R2_001.fastq.gz 6949036526 FASTQ S58_R2 unaligned CPTAC3 2a5791b3-9ca2-4146-a240-795f61628d14 f92f4a4884ae17f79712c4d2fb7d887f {"aliquot_tag": "ALQ_6e05a5d1", "sample": "S58", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.transcriptome.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.transcriptome.gdc_realn.bam 12186096862 BAM transcriptome harmonized CPTAC3 6b20254d-dfb5-4a88-877a-d829aea26b68 8e1c5af3d562caa3511509e6bae2fffa {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor"} -C3N-00155.RNA-Seq.transcriptome.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.transcriptome.gdc_realn.bam 6391189596 BAM transcriptome harmonized CPTAC3 6d6b0760-00d8-4b8a-9213-a47ebbc0d165 e6c1150cff9290286bf492b12c79b6bc {"aliquot_tag": "ALQ_6e05a5d1", "gdc_sample_type": "Primary Tumor"} -C3N-00155.WGS.N C3N-00155 UCEC WGS blood_normal CPT0110000002 CPT0110000002.WholeGenome.RP-1303.bam 78905328586 BAM aligned CPTAC3 1cfd640e-1232-4c0c-9bd5-417f2087928a 322c608d74c0fc59834ef59d0d21196e {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00155.WGS.N.hg38 C3N-00155 UCEC WGS blood_normal CPT0110000002 5adced66-9cb2-4fb3-a62d-73088f173b03_wgs_gdc_realn.bam 114631627440 BAM harmonized CPTAC3 fb1b4a51-f44c-47a6-91c7-b93bfc6dbed7 fcd54af5918fcea2eb8f171646768727 {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00155.WGS.T C3N-00155 UCEC WGS tumor CPT0104820009 CPT0104820009.WholeGenome.RP-1303.bam 69673143095 BAM aligned CPTAC3 7ca532ed-d51f-4376-b967-7ac23ab3053c 80ad4b707ea71b374c4741f3426ba23e {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor"} -C3N-00155.WGS.T.hg38 C3N-00155 UCEC WGS tumor CPT0104820009 62db6c0b-5281-4d54-ae61-e2837422c183_wgs_gdc_realn.bam 99214604567 BAM harmonized CPTAC3 b132a84e-0733-4461-87d3-9e0a1d758480 dcd8bcbdf57ed246047ad1ef8f119045 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor"} -C3N-00155.WXS.N C3N-00155 UCEC WXS blood_normal CPT0110000002 CPT0110000002.WholeExome.RP-1303.bam 22907457319 BAM aligned CPTAC3 469ffec9-cd9a-4c0d-870c-c0f690f29217 adb7fb6417540440094f71d86dcd4817 {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00155.WXS.N.hg38 C3N-00155 UCEC WXS blood_normal CPT0110000002 5adced66-9cb2-4fb3-a62d-73088f173b03_wxs_gdc_realn.bam 31762958399 BAM harmonized CPTAC3 ab9967a6-16fa-4b94-8301-ebc2da4ccf26 1397a6bb7ce98acb159e01de89e462f8 {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00155.WXS.T C3N-00155 UCEC WXS tumor CPT0104820009 CPT0104820009.WholeExome.RP-1303.bam 25497760093 BAM aligned CPTAC3 d15a429c-f2b5-4890-84c5-aeae49df7466 48c3a6c46569ff5db0fd59cf57df05a7 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor"} -C3N-00155.WXS.T.hg38 C3N-00155 UCEC WXS tumor CPT0104820009 62db6c0b-5281-4d54-ae61-e2837422c183_wxs_gdc_realn.bam 35392980917 BAM harmonized CPTAC3 dc755142-6651-4df0-85a1-4c970f3c23c7 3ecdeceeff3bef71db4a79f0723a6253 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor"} -C3N-00167.MethArray.Green.A C3N-00167 LUAD Methylation_Array tissue_normal CPT0013630009 203028200014_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 43f9f180-78a9-40b7-a502-9a92004538af c6dfb948441975e1d607c22e93bebeab {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.MethArray.Green.T C3N-00167 LUAD Methylation_Array tumor CPT0013600009 202176290087_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 62b11be8-72c2-49d3-83f1-59bcd3427704 b488ea5cf43eaf49bbb3bcda45f0377d {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor"} -C3N-00167.MethArray.Red.A C3N-00167 LUAD Methylation_Array tissue_normal CPT0013630009 203028200014_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 6d19c91f-55cd-424d-a0aa-dca635ab4627 5e8ab89d1276ec55274dd05e3a241d2b {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.MethArray.Red.T C3N-00167 LUAD Methylation_Array tumor CPT0013600009 202176290087_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 942c4e16-1625-4263-9e43-9ce7542b8a4f 2a8ca32f92e2072ba985498da052f12e {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor"} -C3N-00167.miRNA-Seq.A.hg38 C3N-00167 LUAD miRNA-Seq tissue_normal CPT0013630006 6ad8a7af-1039-48d8-ad5f-ea2c1826f83f_mirnaseq_gdc_realn.bam 339494882 BAM harmonized CPTAC3 13d84075-eab0-4cb3-8016-72d060802c37 100d537e58b1ada92e98416635b36a78 {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.miRNA-Seq.S35_L002_R1.T C3N-00167 LUAD miRNA-Seq tumor CPT0013600013 180924_UNC31-K00269_0154_AHWTMLBBXX_CGGAAT_S35_L002_R1_001.unaln.bam 261513548 BAM S35_L002_R1 unaligned CPTAC3 ca2f66d1-a521-4e30-a77a-25f627c884c0 f156cbd36d30d7b386845a96f8ac8fb4 {"aliquot_tag": "ALQ_b3cec628", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00167.miRNA-Seq.S37_L002_R1.A C3N-00167 LUAD miRNA-Seq tissue_normal CPT0013630006 181108_UNC31-K00269_0163_BH23TVBBXY_CGGAAT_S37_L002_R1_001.unaln.bam 302239374 BAM S37_L002_R1 unaligned CPTAC3 ad1e4357-e66c-4c76-b488-3875ec8c8262 f0721848cef938b43c805de8acde1b1d {"aliquot_tag": "ALQ_9d1f7936", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.miRNA-Seq.T.hg38 C3N-00167 LUAD miRNA-Seq tumor CPT0013600013 6633fcc0-6e1a-4f65-9eff-f28a9cb55206_mirnaseq_gdc_realn.bam 288701211 BAM harmonized CPTAC3 4e199933-c2dc-4a86-adda-ebb4654b4e66 7da8ff6fcaa03e7a012cb0e90cb6f38f {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor"} -C3N-00167.RNA-Seq.chimeric.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.chimeric.gdc_realn.bam 45086193 BAM chimeric harmonized CPTAC3 6917632a-0743-4689-b7ba-5e2ed79448b2 e104a69d8a46806c55f817081f3ae84a {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.RNA-Seq.chimeric.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.chimeric.gdc_realn.bam 90845803 BAM chimeric harmonized CPTAC3 327cb3b7-1b74-40e1-94e1-76c7fac119bc 30d5a211c8e61dec415d22dfd348bd9b {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor"} -C3N-00167.RNA-Seq.genomic.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.genomic.gdc_realn.bam 6212015443 BAM genomic harmonized CPTAC3 30da56f2-0dbf-446f-ac67-81d718be706b 6105bc2216d49437f8dfa0955c986a7b {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.RNA-Seq.genomic.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.genomic.gdc_realn.bam 9314829295 BAM genomic harmonized CPTAC3 907c6a0e-5bd2-4a0b-99f8-1cff51d2c63b 12098c272219221f67fe25173f022df6 {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor"} -C3N-00167.RNA-Seq.S21_L006_R1.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3116067115 FASTQ S21_L006_R1 unaligned CPTAC3 11ffea46-3e8b-4773-ba4b-beba73c1be38 51c08c11eeeb47bf1a79cf0e663527ff {"aliquot_tag": "ALQ_9d1f7936", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.RNA-Seq.S21_L006_R2.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 3270939252 FASTQ S21_L006_R2 unaligned CPTAC3 dfdd2418-6b07-4c78-8ee3-6ec5f3e8256d a43d422b523699efa1baff1cb940fcd7 {"aliquot_tag": "ALQ_9d1f7936", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.RNA-Seq.S5_L002_R1.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4447593619 FASTQ S5_L002_R1 unaligned CPTAC3 854da3b4-9736-461f-96b4-8ea145823fdd ad5498beec00b5cc4a86f8eacebe61f8 {"aliquot_tag": "ALQ_b3cec628", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00167.RNA-Seq.S5_L002_R2.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4866437509 FASTQ S5_L002_R2 unaligned CPTAC3 bdaf1927-26a6-4947-bdad-0956e610efc0 9c21643a2abd2f5e114602d5c5f3b29e {"aliquot_tag": "ALQ_b3cec628", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00167.RNA-Seq.transcriptome.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.transcriptome.gdc_realn.bam 8031524496 BAM transcriptome harmonized CPTAC3 025dfd13-ca7d-4333-88d2-a69b64449ac0 fb9156dca498701c9874255cde72afcf {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.RNA-Seq.transcriptome.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.transcriptome.gdc_realn.bam 12106737584 BAM transcriptome harmonized CPTAC3 3fb411e5-c72d-40dd-835b-447ecf0db76d 919ac1e6b66d83fb33b566a92cfd39be {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor"} -C3N-00167.WGS.A C3N-00167 LUAD WGS tissue_normal CPT0013630009 CPT0013630009.WholeGenome.RP-1303.bam 72951085323 BAM aligned CPTAC3 c68eed39-e790-4e29-b15c-489a3412610f 5d37818886e44b2d5e9755757d24fab0 {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.WGS.A.hg38 C3N-00167 LUAD WGS tissue_normal CPT0013630009 466c48cf-e63a-4a3e-9733-bdd2ebbe1f41_wgs_gdc_realn.bam 108565467856 BAM harmonized CPTAC3 6cd41d6d-d4c1-425b-a984-443cbdcef4d8 efd7e9001bd452be68e4cf204a65c440 {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.WGS.N C3N-00167 LUAD WGS blood_normal CPT0016510002 CPT0016510002.WholeGenome.RP-1303.bam 56391285430 BAM aligned CPTAC3 7c1b9a45-17a4-45cd-9285-eeb31d1cfc68 48d571e901f412fa16604fd82584fba7 {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal"} -C3N-00167.WGS.N.hg38 C3N-00167 LUAD WGS blood_normal CPT0016510002 ec89929f-7eaa-44e9-bee0-98a39da5ee6f_gdc_realn.bam 81412547620 BAM harmonized CPTAC3 d20b4f56-0016-4bb7-91b6-addf61cc8e03 d81e864d8dbb6f633a1df7c1619a0840 {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal"} -C3N-00167.WGS.T C3N-00167 LUAD WGS tumor CPT0013600009 CPT0013600009.WholeGenome.RP-1303.bam 64532876192 BAM aligned CPTAC3 07b0cdfc-6c78-47fc-be97-0f190fa8f900 d219c185eec3a93275ec8494ef491834 {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor"} -C3N-00167.WGS.T.hg38 C3N-00167 LUAD WGS tumor CPT0013600009 f674b5fd-beb5-48ec-834e-b6ebdb8e9056_gdc_realn.bam 93309951876 BAM harmonized CPTAC3 0882cca2-f919-4f36-8029-2c2d8fdbeaee ad139a0aa41fc5eafda285b31f9af30f {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor"} -C3N-00167.WXS.A C3N-00167 LUAD WXS tissue_normal CPT0013630009 CPT0013630009.WholeExome.RP-1303.bam 38254055998 BAM aligned CPTAC3 2ab7ddac-7875-4872-b52a-5ac74b090422 2b1170a03fab18a894b85d677c622f8b {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.WXS.A.hg38 C3N-00167 LUAD WXS tissue_normal CPT0013630009 466c48cf-e63a-4a3e-9733-bdd2ebbe1f41_wxs_gdc_realn.bam 51939983669 BAM harmonized CPTAC3 d7958c2b-a368-45a2-ba4d-55bd2bb4fe46 743ea356eafb5f86b620608b39b25268 {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00167.WXS.N C3N-00167 LUAD WXS blood_normal CPT0016510002 CPT0016510002.WholeExome.RP-1303.bam 26317776839 BAM aligned CPTAC3 d6d250e2-8fe5-415d-9189-42bfc2ebc607 c8fa4bed15aec71e9edd9d0e2fd78563 {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal"} -C3N-00167.WXS.N.hg38 C3N-00167 LUAD WXS blood_normal CPT0016510002 ec89929f-7eaa-44e9-bee0-98a39da5ee6f_gdc_realn.bam 35790226008 BAM harmonized CPTAC3 c787fccf-de43-4170-93af-fa09eccdbe10 c9e5d6a6c0b5a949dd3a9c608d3e892c {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal"} -C3N-00167.WXS.T C3N-00167 LUAD WXS tumor CPT0013600009 CPT0013600009.WholeExome.RP-1303.bam 23457201277 BAM aligned CPTAC3 c4d06b35-9b2a-45d6-868b-872cb0f87066 d2848c6db8c5fa36222da4b1f0b5816e {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor"} -C3N-00167.WXS.T.hg38 C3N-00167 LUAD WXS tumor CPT0013600009 f674b5fd-beb5-48ec-834e-b6ebdb8e9056_gdc_realn.bam 32000296946 BAM harmonized CPTAC3 96d46109-6c4b-4e88-bcbe-91be63779414 58f341c8caf736ef63b03f2e17e4d8bd {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_1e5ec9a4.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0020010009 204372030013_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 7dc13dc4-8848-4ac0-a936-244da8cd5d0e 830457ab2f1d504b764be3e77675a6dc {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_1e5ec9a4.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0020010009 204372030013_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 c3964b12-32a9-4a10-b6e5-ca08f3c6d218 2eebab1e20fa3754ddcd1ee7556cad69 {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_1e5ec9a4.WGS.T C3N-00168 CCRCC WGS tumor CPT0020010009 CPT0020010009.WholeGenome.RP-2158.bam 36100701790 BAM aligned CPTAC3 a95735c3-3295-4e4b-ad8e-3abc4bb06fbb c042035ccc7374218ac8a6dde6352f1c {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_1e5ec9a4.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0020010009 407da25d-b191-444d-b084-8597d7f27e8e_wgs_gdc_realn.bam 106040843242 BAM harmonized CPTAC3 5e5db86b-53b8-4292-9722-b5fa4f258df9 7f447f954c07f28326876e163db64a8c {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_1e5ec9a4.WXS.T C3N-00168 CCRCC WXS tumor CPT0020010009 CPT0020010009.WholeExome.RP-1303.bam 18836693322 BAM aligned CPTAC3 dd64aff9-f432-4253-9eef-4be83975bc7e 447b33ce39c419fe62472f112dcb7cc8 {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_1e5ec9a4.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0020010009 407da25d-b191-444d-b084-8597d7f27e8e_wxs_gdc_realn.bam 25390587127 BAM harmonized CPTAC3 c64ae63f-4098-44e5-9bd5-e1fdf6dc7355 f44a44c8deba4cabc4f08061e8121a39 {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_233ee014.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0020000009 204367470157_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dc3e9a48-f554-49f7-8fd1-cb31a25a6f09 f8482c68d25b3cc8d23b2d8b09d1d0e1 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_233ee014.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0020000009 204367470157_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 a4045b23-b779-4eb5-bed9-ed2c5bba450f e4d1c1cdfdfe559a70f197a6ec782510 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_233ee014.WGS.T C3N-00168 CCRCC WGS tumor CPT0020000009 CPT0020000009.WholeGenome.RP-2158.bam 21760559988 BAM aligned CPTAC3 da1133b5-8181-4755-9924-41ab135884f9 af4795b34b7ad88fd7b87d505b3a768a {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_233ee014.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0020000009 25b0db6e-b73d-4171-8f51-80d137dd3707_wgs_gdc_realn.bam 63063496096 BAM harmonized CPTAC3 dbc70484-e919-4902-a03d-0780f9d96eb6 ecb61c54520d028599ce841405070a82 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_233ee014.WXS.T C3N-00168 CCRCC WXS tumor CPT0020000009 CPT0020000009.WholeExome.RP-1303.bam 22513894422 BAM aligned CPTAC3 12431691-c137-44b1-b3a8-3fc96a3cffde 33ea08a3e27eea5261bc7f1d712f1ac0 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_233ee014.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0020000009 25b0db6e-b73d-4171-8f51-80d137dd3707_wxs_gdc_realn.bam 30970977563 BAM harmonized CPTAC3 4600547c-c0ad-404c-a3a1-c56403cdb325 2f43dfc774017a1863f95d8617bddbd8 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_2f56b82d.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0019980009 204367490082_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 af0d43ec-a762-43c3-903e-3be2c62336f5 41e513fdbfe0bfbf46e200f0db946db3 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_2f56b82d.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0019980009 204367490082_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 a56050d4-9124-4b45-b898-6cc07be7db3c d2c95f0c5621fff48765aece9c579523 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_2f56b82d.WGS.T C3N-00168 CCRCC WGS tumor CPT0019980009 CPT0019980009.WholeGenome.RP-2158.bam 19908532545 BAM aligned CPTAC3 cea7b9ab-40af-4a0d-90ee-db8f653e67c9 d7d5aba759bf0075869fe62015b63865 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_2f56b82d.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0019980009 e08784ff-f64c-44a3-8b35-3facd041574a_wgs_gdc_realn.bam 57217154066 BAM harmonized CPTAC3 63c25c39-de80-49ff-915b-2e5adb8e7e81 c9effc5a7f75f58fbd2df8945b76d49c {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_2f56b82d.WXS.T C3N-00168 CCRCC WXS tumor CPT0019980009 CPT0019980009.WholeExome.RP-1303.bam 19032385394 BAM aligned CPTAC3 c85d05f7-dc99-4353-b20c-0372389cc296 633b36b952b55c6db4457bd5231eee00 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_2f56b82d.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0019980009 e08784ff-f64c-44a3-8b35-3facd041574a_wxs_gdc_realn.bam 26953679339 BAM harmonized CPTAC3 727e8aac-19bb-46eb-b68f-e0c7a63b5c61 8c97e1c607aa2269887ad084bd61e31a {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_8ee1d435.miRNA-Seq.S43_L003_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0020010006 200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L003_R1_001.unaln.bam 282708142 BAM S43_L003_R1 unaligned CPTAC3 011ccbdd-2a34-4132-b53a-169196fd4cb1 b6377e2e5e584fcdce8960a6d8e17abc {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_8ee1d435.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0020010006 bc226434-ead5-400c-b2e0-9eb8abc916f6_mirnaseq_gdc_realn.bam 310367822 BAM harmonized CPTAC3 ec5dd6b3-7596-4db8-abcf-72860bb253dd 834883923baf5eb94bd660c1b8ae6512 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_8ee1d435.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.chimeric.gdc_realn.bam 44174145 BAM chimeric harmonized CPTAC3 5297af3b-15a6-4231-8df2-d1eac0a02d8e 986cb8227d47b9b727c6cd2f1a1b7bb4 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_8ee1d435.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.genomic.gdc_realn.bam 7378479910 BAM genomic harmonized CPTAC3 2df110df-2fe6-4f56-b5b4-d5bce51002fc 7ca629ca1c54deb5c976c2e19df8e2a5 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_8ee1d435.RNA-Seq.S7_L002_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3513323682 FASTQ S7_L002_R1 unaligned CPTAC3 06b7bc41-372f-4272-974c-3403b43fcc72 a346a8af6469ec7c9ebb8777930c9a56 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_8ee1d435.RNA-Seq.S7_L002_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3996998381 FASTQ S7_L002_R2 unaligned CPTAC3 15f273ef-9b19-4757-890a-0372f73b4163 f649e238222ccf5cb12d05b11aa146aa {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_8ee1d435.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.transcriptome.gdc_realn.bam 10219606522 BAM transcriptome harmonized CPTAC3 e7162f6f-c95c-4069-9667-fea20a2d81d8 f21772ae814a8aa56ec62aa33d191149 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_b381fd85.miRNA-Seq.S44_L003_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0020000006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAGCTT_S44_L003_R1_001.unaln.bam 357275569 BAM S44_L003_R1 unaligned CPTAC3 9003572f-a41c-47ab-bb5c-64474a1e2e62 e5f7fe3982df5bf18c2d0746cde39337 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_b381fd85.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0020000006 0deabf08-73e3-4453-afc3-b960957b8663_mirnaseq_gdc_realn.bam 387053954 BAM harmonized CPTAC3 9b580cba-9a49-45ff-bb4d-f6c5c5cb7ed0 97d5185b6ae63c10a1230771467cd3db {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_b381fd85.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.chimeric.gdc_realn.bam 32423502 BAM chimeric harmonized CPTAC3 7159f751-960c-4c70-b19f-2d415c6c4f23 a0747d91a42a209d0bc87c53224d0e51 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_b381fd85.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.genomic.gdc_realn.bam 7755857380 BAM genomic harmonized CPTAC3 6d712c5c-3a41-4aa3-9fd4-4975fc4634a7 0c2adaa72f6c349db9430038c55b89b9 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_b381fd85.RNA-Seq.S6_L002_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3629532073 FASTQ S6_L002_R1 unaligned CPTAC3 e97e9e36-b700-4168-af27-f3499251270f 075202d565de03aa52de56aa2e1bb2aa {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_b381fd85.RNA-Seq.S6_L002_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4211308110 FASTQ S6_L002_R2 unaligned CPTAC3 15de8ab5-f8ea-483c-9ce1-0bde72a71a7a 7e19d1af8b162b458a3a22073153d8e2 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_b381fd85.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.transcriptome.gdc_realn.bam 12129171743 BAM transcriptome harmonized CPTAC3 9f08cc3c-c339-4d48-a549-eba3dc070a04 1f613da154798630d88ea44fb6680354 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_bfe9a5bc.miRNA-Seq.S13_L003_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0019980006 200526_UNC32-K00270_0248_BHH7WFBBXY_GATCAG_S13_L003_R1_001.unaln.bam 199304708 BAM S13_L003_R1 unaligned CPTAC3 f2e0266a-63ba-4aaf-be09-f3183a98c1e0 6ed238f11c7b4f3ee04ed0fee6da435d {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_bfe9a5bc.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0019980006 f163afe5-3e77-4c04-87df-a3c3a35c7221_mirnaseq_gdc_realn.bam 220856363 BAM harmonized CPTAC3 83beb6c0-8fbd-4364-b6d1-31edfc9aa2d2 4231357025de36d9fc703865cab1487f {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_bfe9a5bc.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.chimeric.gdc_realn.bam 45907275 BAM chimeric harmonized CPTAC3 becd4c01-22bb-4b6f-bd80-d2c859350d99 9ba1f683d3feef090d8109ff4fedfe4d {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_bfe9a5bc.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.genomic.gdc_realn.bam 9117047130 BAM genomic harmonized CPTAC3 86df6df9-f98d-4746-9704-1db3b55f91df b59beb11d7919fdf22620127d92d4869 {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_bfe9a5bc.RNA-Seq.S8_L002_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4364226137 FASTQ S8_L002_R1 unaligned CPTAC3 7c3020d8-ddfa-4c72-bc6a-04f349f4a1f2 f3b710fcd22e8662372c8ba1916328bc {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_bfe9a5bc.RNA-Seq.S8_L002_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 5091998320 FASTQ S8_L002_R2 unaligned CPTAC3 381701d8-7529-441b-93c2-657e05b87270 961ceacb93846415ac36bf96195aa556 {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00168.DUP_bfe9a5bc.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.transcriptome.gdc_realn.bam 12206112551 BAM transcriptome harmonized CPTAC3 082b4d91-df67-4dd0-9dfb-eae3cc810d3a b200314a94f627da0404f8bb37f91040 {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00168.MethArray.Green.A C3N-00168 CCRCC Methylation_Array tissue_normal CPT0020020009 204930630081_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e6e22de4-05cb-4a2c-b1bb-8cc84e18beab 02ffa3666e6b6145a5e1780047e6f65b {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0019990009 202178770100_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 412dab18-7159-4dfa-add4-91b3b616bf44 06bd951e1be4fe9f11beeede774568f0 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor"} -C3N-00168.MethArray.Red.A C3N-00168 CCRCC Methylation_Array tissue_normal CPT0020020009 204930630081_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 d4f4ce1b-4ad0-4ebd-9b59-73e3e48dca7b 039967bb5f3732681dfb1f0d7f1b66aa {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0019990009 202178770100_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 52cb9e3f-37dd-46cd-a139-db2295a97802 32d007aa576182309c56c31e18530bb6 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor"} -C3N-00168.miRNA-Seq.A.hg38 C3N-00168 CCRCC miRNA-Seq tissue_normal CPT0020020006 e6ed750e-8fb7-4d47-b920-dce0ad0f9d2d_mirnaseq_gdc_realn.bam 203377840 BAM harmonized CPTAC3 034fb153-ca09-45cc-9e95-2458cb09d4f3 d7f03cace03a497e425c217a333460bc {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.miRNA-Seq.S29_L004_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0019990006 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L004_R1_001.unaln.bam 264928279 BAM S29_L004_R1 unaligned CPTAC3 3d5b4bcf-8dfa-4223-97c4-69c0e9b5e53a 31ae39389b3705077f8b6065ed310f0a {"aliquot_tag": "ALQ_82898c0c", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.miRNA-Seq.S48_L004_R1.A C3N-00168 CCRCC miRNA-Seq tissue_normal CPT0020020006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGGCA_S48_L004_R1_001.unaln.bam 183265466 BAM S48_L004_R1 unaligned CPTAC3 51b4106c-4afd-44e5-9665-dafe1058546b d75f78106c57700c9e417cd520f51b5f {"aliquot_tag": "ALQ_c941aee5", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0019990006 0c78502e-9a81-46f4-9bcc-b2248b516892_mirnaseq_gdc_realn.bam 295600407 BAM harmonized CPTAC3 958bba7f-9efa-436a-8ebf-dfb98d417408 6d111ac9c18b12b49b5e15e19a57e5a8 {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor"} -C3N-00168.RNA-Seq.chimeric.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.chimeric.gdc_realn.bam 65533781 BAM chimeric harmonized CPTAC3 699e93c4-b3c4-49f4-87ba-848697bbe723 7a066d0548c64cd9f14307493434d4b5 {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.chimeric.gdc_realn.bam 135807173 BAM chimeric harmonized CPTAC3 a90f4104-ec47-45b4-910d-48fa312b0065 1418e64f5683fe249ccc1148a5a94238 {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor"} -C3N-00168.RNA-Seq.genomic.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.genomic.gdc_realn.bam 6766905247 BAM genomic harmonized CPTAC3 28cc5b37-465a-49ea-96e1-0c01835c0925 9a5c170a1244acc045f0df5ac81c45de {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.genomic.gdc_realn.bam 7972243546 BAM genomic harmonized CPTAC3 f71e8b0f-4acb-49b9-9c43-bb2e021876f7 3f52bb88b95da5dc5b33bc7def258a2d {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor"} -C3N-00168.RNA-Seq.S15_L004_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R1_001.fastq.gz 3864148159 FASTQ S15_L004_R1 unaligned CPTAC3 c5ed3de6-ac9f-48c5-923c-79f0d45c0929 abb26f73427021c805e3da98f4244720 {"aliquot_tag": "ALQ_82898c0c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00168.RNA-Seq.S15_L004_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R2_001.fastq.gz 4262014354 FASTQ S15_L004_R2 unaligned CPTAC3 b9e5e48d-e2ee-4478-b3fe-5d4a04cc6e8c 215218034f200177fc273f7f75728c83 {"aliquot_tag": "ALQ_82898c0c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00168.RNA-Seq.S3_L007_R1.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R1_001.fastq.gz 3345283097 FASTQ S3_L007_R1 unaligned CPTAC3 dbb0640c-e567-48bf-9a78-a36fb22cb612 c0f77954ce458e56403dee34ae05060e {"aliquot_tag": "ALQ_c941aee5", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.RNA-Seq.S3_L007_R2.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R2_001.fastq.gz 3499237068 FASTQ S3_L007_R2 unaligned CPTAC3 54ebbfd3-243e-4136-a4ec-896075f4a319 37a1c75cfadc4e59aa10c94652930784 {"aliquot_tag": "ALQ_c941aee5", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.RNA-Seq.transcriptome.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.transcriptome.gdc_realn.bam 8820648785 BAM transcriptome harmonized CPTAC3 9380a013-b2a3-455d-ad71-55349aec8699 ef5e715a648a1f7d1593e83d465565f6 {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.transcriptome.gdc_realn.bam 10615660338 BAM transcriptome harmonized CPTAC3 0c4c816b-4ef9-4881-93a2-7825152d4588 e22d4d201af7c559ca546aeae73c87c5 {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor"} -C3N-00168.WGS.A C3N-00168 CCRCC WGS tissue_normal CPT0020020009 CPT0020020009.WholeGenome.RP-1303.bam 55277454894 BAM aligned CPTAC3 746ff435-62bc-43c2-9f1b-36b2eada4dbf 9f937ad077b07ec331a92b397b1c62fe {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.WGS.A.hg38 C3N-00168 CCRCC WGS tissue_normal CPT0020020009 50b27a5f-b499-43db-bb20-6731a4ab74dc_wgs_gdc_realn.bam 81089571950 BAM harmonized CPTAC3 971c3508-2c02-425f-8da4-6221c3dbe0ec 2c0dc4143b5252fed0f91fe0b4aa6521 {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.WGS.N C3N-00168 CCRCC WGS blood_normal CPT0020920002 CPT0020920002.WholeGenome.RP-1303.bam 70898365568 BAM aligned CPTAC3 8285c519-1d52-4681-b63b-362b16621298 9dc208b4806a0524d68d241f8a7c811b {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00168.WGS.N.hg38 C3N-00168 CCRCC WGS blood_normal CPT0020920002 9c909c63-b574-4d09-ba11-1cacb92a327a_gdc_realn.bam 103508220184 BAM harmonized CPTAC3 c2075a0a-3061-480e-8a31-2e3bfddc0452 1740fe0a393b952a31b099b9d40510ad {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00168.WGS.T C3N-00168 CCRCC WGS tumor CPT0019990009 CPT0019990009.WholeGenome.RP-1303.bam 63185757433 BAM aligned CPTAC3 91b64aef-8956-465e-b2ea-a57fc475e953 43333f3dd5a713aed5ea5c54f2ea4f6c {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor"} -C3N-00168.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0019990009 b3eac668-b97c-4ca0-a475-4f3415c8eb65_gdc_realn.bam 90946253105 BAM harmonized CPTAC3 486ab4b4-0fc1-4bdf-8820-79ad6193833f e9415fc38dbf0f636b964e847fd7cbe8 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor"} -C3N-00168.WXS.A C3N-00168 CCRCC WXS tissue_normal CPT0020020009 CPT0020020009.WholeExome.RP-1303.bam 31715145491 BAM aligned CPTAC3 95ef0abf-563b-455f-bda3-b21d749edb5a 8f0809f5713fc77a96f94d90d701f04b {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.WXS.A.hg38 C3N-00168 CCRCC WXS tissue_normal CPT0020020009 50b27a5f-b499-43db-bb20-6731a4ab74dc_wxs_gdc_realn.bam 42752810310 BAM harmonized CPTAC3 859b165e-783e-4aff-aba6-839ebadbe45d 1b38a224eb8b3c3c72232c3615812ba4 {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00168.WXS.N C3N-00168 CCRCC WXS blood_normal CPT0020920002 CPT0020920002.WholeExome.RP-1303.bam 23080419831 BAM aligned CPTAC3 37a1d584-f9ef-43d2-ae5e-56cfaa7aed39 ddd08e5dfc0273aa87a1d28068e3dc61 {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00168.WXS.N.hg38 C3N-00168 CCRCC WXS blood_normal CPT0020920002 9c909c63-b574-4d09-ba11-1cacb92a327a_gdc_realn.bam 31284464630 BAM harmonized CPTAC3 1fb9529e-f39e-4033-bd25-5e8a83dd1ea2 e2a9cf1532fff516126a3627f57ecd0a {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00168.WXS.T C3N-00168 CCRCC WXS tumor CPT0019990009 CPT0019990009.WholeExome.RP-1303.bam 25929884253 BAM aligned CPTAC3 1e507e65-94d0-4e1c-b540-f0a7682161e0 463a51b16500970e8fb9ca701c70c238 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor"} -C3N-00168.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0019990009 b3eac668-b97c-4ca0-a475-4f3415c8eb65_gdc_realn.bam 35776200041 BAM harmonized CPTAC3 8c93a797-778d-4b3f-a018-006a6e45d827 3955d9e03946a2107e28f1674e81af37 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor"} -C3N-00169.MethArray.Green.A C3N-00169 LUAD Methylation_Array tissue_normal CPT0014930009 203027390034_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 188a30d0-f201-4d53-87c9-5fca0c9babcc 0fe915aae9c96b526a5e894e2d9bd6c3 {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.MethArray.Green.T C3N-00169 LUAD Methylation_Array tumor CPT0014860009 202176300111_R02C01_Grn.idat 13676227 IDAT Green NA CPTAC3 aa51764e-d273-4131-9839-9c83439a9abb bb6d5dd73c4bceb4cada7e8c2f98a0b9 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor"} -C3N-00169.MethArray.Red.A C3N-00169 LUAD Methylation_Array tissue_normal CPT0014930009 203027390034_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 a17b38e0-3bd2-476a-bba1-b708092ab30a 51d69b262692f33924a6064b58bf8812 {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.MethArray.Red.T C3N-00169 LUAD Methylation_Array tumor CPT0014860009 202176300111_R02C01_Red.idat 13676227 IDAT Red NA CPTAC3 671cd27a-f9a5-4a63-aa93-f89dcc984d1b b111749cac9d0c5ba2d400d849cced07 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor"} -C3N-00169.miRNA-Seq.A.hg38 C3N-00169 LUAD miRNA-Seq tissue_normal CPT0014930006 057a5af2-2916-41b2-88fb-2a77ef9474f6_mirnaseq_gdc_realn.bam 199116726 BAM harmonized CPTAC3 c8305a5f-bd28-41cc-add8-31d4a71b06e9 2da6c8d601fd9e402baabf4af26010e7 {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.miRNA-Seq.S38_L002_R1.A C3N-00169 LUAD miRNA-Seq tissue_normal CPT0014930006 181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L002_R1_001.unaln.bam 179513720 BAM S38_L002_R1 unaligned CPTAC3 de848b3d-e74b-4028-95fe-8bd6d44b0ece dcf95e08a7a62a01193e9ce1b0e5007d {"aliquot_tag": "ALQ_a9eef56d", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.miRNA-Seq.S7_L005_R1.T C3N-00169 LUAD miRNA-Seq tumor CPT0014860006 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L005_R1_001.unaln.bam 193461238 BAM S7_L005_R1 unaligned CPTAC3 bbdfb613-c1c0-4b4c-a763-877e9cc7f070 92e9f0518bf6754ac5ed7479799db0c0 {"aliquot_tag": "ALQ_aa52a9b8", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00169.miRNA-Seq.T.hg38 C3N-00169 LUAD miRNA-Seq tumor CPT0014860006 1a929667-b416-4b94-a7a8-febdfe299556_mirnaseq_gdc_realn.bam 208572483 BAM harmonized CPTAC3 892b3fad-756a-43d9-a5b4-feb7c0a4b10e f2949207966e0c58b30ce32f4a3e5a3c {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor"} -C3N-00169.RNA-Seq.chimeric.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.chimeric.gdc_realn.bam 42809450 BAM chimeric harmonized CPTAC3 c7c18e65-ea1c-42f7-8288-8ad9b9ad9414 a1986150a9c6454503de9cb59db1ba43 {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.RNA-Seq.chimeric.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.chimeric.gdc_realn.bam 91750093 BAM chimeric harmonized CPTAC3 798aa7b2-d82b-4758-8ac0-bb0a36da5d1c 93e0a5d303132fd48866dd4320d87931 {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor"} -C3N-00169.RNA-Seq.genomic.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.genomic.gdc_realn.bam 6909830414 BAM genomic harmonized CPTAC3 3b5992d8-e89e-4f13-9f16-6d4c90ff09fd b902d3f9a8a2888e4aca11bcc4aef47b {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.RNA-Seq.genomic.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.genomic.gdc_realn.bam 11314632137 BAM genomic harmonized CPTAC3 209d0f6d-6c59-4894-b29d-4a136a87f40f 36a669660cc586f7eda87a48ea5d3330 {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor"} -C3N-00169.RNA-Seq.S18_L005_R1.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 3276435555 FASTQ S18_L005_R1 unaligned CPTAC3 e7cbc140-6693-4e04-8109-9ddd8f4dda7b 6c71f613b2ed36267f66e7e5d574c485 {"aliquot_tag": "ALQ_a9eef56d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.RNA-Seq.S18_L005_R2.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 3451101401 FASTQ S18_L005_R2 unaligned CPTAC3 d99434f4-23cb-46bf-bede-f719977004ca a9fa81ae27ede704b3ba430b43ebca9c {"aliquot_tag": "ALQ_a9eef56d", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.RNA-Seq.S6_L008_R1.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R1_001.fastq.gz 5142375990 FASTQ S6_L008_R1 unaligned CPTAC3 a999524b-0b2b-4c74-a53a-12ac100f22fc 3371f3daeb0eed8aa5a3900fe479937b {"aliquot_tag": "ALQ_aa52a9b8", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00169.RNA-Seq.S6_L008_R2.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R2_001.fastq.gz 5558564613 FASTQ S6_L008_R2 unaligned CPTAC3 9159c7d7-2b4c-46b8-8e60-6767546d2068 96ef0a4ab83f454a8de6494334939da7 {"aliquot_tag": "ALQ_aa52a9b8", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00169.RNA-Seq.transcriptome.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.transcriptome.gdc_realn.bam 7645768813 BAM transcriptome harmonized CPTAC3 93ea829a-ad46-47d0-83ea-c954962a8056 d8b6ea05af8f4799b5ba616d9e0686ab {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.RNA-Seq.transcriptome.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.transcriptome.gdc_realn.bam 13398685777 BAM transcriptome harmonized CPTAC3 1b0f1e4b-d083-4e7c-98a8-7544e5d809ff d5d31957423fe59a8747cbc5895e0d8c {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor"} -C3N-00169.WGS.A C3N-00169 LUAD WGS tissue_normal CPT0014930009 CPT0014930009.WholeGenome.RP-1303.bam 51434080676 BAM aligned CPTAC3 70244afb-1e6c-4118-bcbf-6e859bf5dcfc fc215a97c7316d5e64c8b057b681c92a {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.WGS.A.hg38 C3N-00169 LUAD WGS tissue_normal CPT0014930009 d4c71407-3c20-4063-ba8d-686f508d5bb2_wgs_gdc_realn.bam 75260295235 BAM harmonized CPTAC3 8a774b13-5bf4-40c3-924a-cb1468b8d237 7b5c9f037c7fafbcd02553e8a396afbc {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.WGS.N C3N-00169 LUAD WGS blood_normal CPT0016620002 CPT0016620002.WholeGenome.RP-1303.bam 63192525059 BAM aligned CPTAC3 a27f0845-3f50-4aa9-85a3-6e8ffc5d81d3 7456a5c24e5873c0d96e80613946a014 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00169.WGS.N.hg38 C3N-00169 LUAD WGS blood_normal CPT0016620002 5b628c05-f250-42e1-a4fb-51bc68e3290e_gdc_realn.bam 90910737971 BAM harmonized CPTAC3 512f7752-fe90-4858-b937-6bb4b76ef75c a898e3b82afd6131b25993a141b77de9 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00169.WGS.T C3N-00169 LUAD WGS tumor CPT0014860009 CPT0014860009.WholeGenome.RP-1303.bam 56666416331 BAM aligned CPTAC3 5fcbacac-fe36-419b-bf12-281db74aabe8 e69faf3f89459802a7b3c43efd564af5 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor"} -C3N-00169.WGS.T.hg38 C3N-00169 LUAD WGS tumor CPT0014860009 c46cbf07-918a-4264-bc21-21c0b95befd2_gdc_realn.bam 83127837132 BAM harmonized CPTAC3 8ece3583-e956-4bb5-ab5a-e86e86556997 c8614de71cd478ea02b57503892b4a4d {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor"} -C3N-00169.WXS.A C3N-00169 LUAD WXS tissue_normal CPT0014930009 CPT0014930009.WholeExome.RP-1303.bam 35925824690 BAM aligned CPTAC3 cbb12b64-bdea-4065-8611-cb33c4477ee1 351948aaeab5185eba3657eb9388c35f {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.WXS.A.hg38 C3N-00169 LUAD WXS tissue_normal CPT0014930009 d4c71407-3c20-4063-ba8d-686f508d5bb2_wxs_gdc_realn.bam 49526686538 BAM harmonized CPTAC3 6e3a08f0-018d-4787-8f96-62994f7b8503 80ea17cdd5204ac8ebf40f526dd0d632 {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00169.WXS.N C3N-00169 LUAD WXS blood_normal CPT0016620002 CPT0016620002.WholeExome.RP-1303.bam 29613837939 BAM aligned CPTAC3 36ad5ecc-8ea6-4c98-9022-a18aefcab7c4 dd78c5babf93cd96aad2e20d03ba3db6 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00169.WXS.N.hg38 C3N-00169 LUAD WXS blood_normal CPT0016620002 5b628c05-f250-42e1-a4fb-51bc68e3290e_gdc_realn.bam 40775738887 BAM harmonized CPTAC3 9747802e-c40f-45cc-b79f-d5308141b839 95fab9c6c4e23683f38dcbeb054480f3 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00169.WXS.T C3N-00169 LUAD WXS tumor CPT0014860009 CPT0014860009.WholeExome.RP-1303.bam 24934499360 BAM aligned CPTAC3 d54aab44-43ef-4987-8b07-9da1f4e40a5f c68b1093f45831e2bfa7b73294b7d867 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor"} -C3N-00169.WXS.T.hg38 C3N-00169 LUAD WXS tumor CPT0014860009 c46cbf07-918a-4264-bc21-21c0b95befd2_gdc_realn.bam 34198378303 BAM harmonized CPTAC3 dc29c7ad-da85-4dbe-84ba-c5fdaa80597e 4dc86c777e069dd9487b2984ab3631e8 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor"} -C3N-00175.ADD_d0c52957.miRNA-Seq.S6_L005_R1.T C3N-00175 LUAD miRNA-Seq tumor CPT0013880006 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L005_R1_001.unaln.bam 214079390 BAM S6_L005_R1 unaligned CPTAC3 2e545870-cd24-4067-a4de-72fbb531377a 9ff8709f05122cfeb5f09d0675429d21 {"aliquot_tag": "ADD_d0c52957", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00175.ADD_d0c52957.miRNA-Seq.T.hg38 C3N-00175 LUAD miRNA-Seq tumor CPT0013880006 4d5dc10f-18e3-43b8-beb5-ed35bd62de6f_mirnaseq_gdc_realn.bam 234212759 BAM harmonized CPTAC3 a4f1d4f6-a7d8-4d8b-a392-7785ff01386a 5389ba73efcf472b57b9a6b858067952 {"aliquot_tag": "ADD_d0c52957", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3N-00175.MethArray.Green.A C3N-00175 LUAD Methylation_Array tissue_normal CPT0013910008 203028200034_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d94d4809-a27e-461d-8eef-e43e7ca1a08d b0814297889cfaba53c1ef36064a8e48 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.MethArray.Green.T C3N-00175 LUAD Methylation_Array tumor CPT0013880009 202176290047_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 28205800-4b06-4ef8-9ac4-3ca14be784bb d72cdb79543082c2cf0fe3fd075de67d {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor"} -C3N-00175.MethArray.Red.A C3N-00175 LUAD Methylation_Array tissue_normal CPT0013910008 203028200034_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 d925f7d1-de6c-449b-bc8f-310856a3e005 0b6ce9e8f41a220192d7a2b5f9413890 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.MethArray.Red.T C3N-00175 LUAD Methylation_Array tumor CPT0013880009 202176290047_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b02d3cfd-52a5-4bae-b312-f5263f538316 809923e347cbf9d0ecff3d2623604264 {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor"} -C3N-00175.miRNA-Seq.A.hg38 C3N-00175 LUAD miRNA-Seq tissue_normal CPT0013910005 5d11923b-f615-4014-be9a-af3d007940bb_mirnaseq_gdc_realn.bam 208058778 BAM harmonized CPTAC3 b9cc7c78-9002-438e-8a2c-6034344072c5 91d6f38301a9a892b9845b3ec592dbff {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.miRNA-Seq.S47_L002_R1.A C3N-00175 LUAD miRNA-Seq tissue_normal CPT0013910005 181108_UNC31-K00269_0163_BH23TVBBXY_TCGAAG_S47_L002_R1_001.unaln.bam 184453785 BAM S47_L002_R1 unaligned CPTAC3 6dc7f348-15f1-4f04-b53a-53e057aadc29 8fcd44a111996702e9aeb782e6c09513 {"aliquot_tag": "ALQ_8f80c939", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.RNA-Seq.chimeric.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.chimeric.gdc_realn.bam 59266497 BAM chimeric harmonized CPTAC3 656ed925-dc92-4039-a445-ffb4fb1e01bc a5c56d5623abb93e86cb51a95bd0dded {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.RNA-Seq.chimeric.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.chimeric.gdc_realn.bam 46658204 BAM chimeric harmonized CPTAC3 ae68238d-e804-422d-95a3-ccab5ba740f5 3d48d34af5404385022aa0669a1aa3c1 {"aliquot_tag": "ALQ_b9b4ec99", "gdc_sample_type": "Primary Tumor"} -C3N-00175.RNA-Seq.genomic.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.genomic.gdc_realn.bam 7216302327 BAM genomic harmonized CPTAC3 fc05e42e-036e-4e9c-881a-e4358165fae4 d85e210dc20b9ec932a2a54a84f37af5 {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.RNA-Seq.genomic.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.genomic.gdc_realn.bam 10849229706 BAM genomic harmonized CPTAC3 c362abb7-4ad9-44ca-90a4-0cc75df3763e b3060f5738c453eb453842bef2bfb39f {"aliquot_tag": "ALQ_b9b4ec99", "gdc_sample_type": "Primary Tumor"} -C3N-00175.RNA-Seq.S10_L003_R1.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 4032180329 FASTQ S10_L003_R1 unaligned CPTAC3 2bc03bbd-a5ad-472b-9b07-9eb7c4139a7b 7852e6884403c835a63b2dd51a47b7c0 {"aliquot_tag": "ALQ_b9b4ec99", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00175.RNA-Seq.S10_L003_R2.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 4028284906 FASTQ S10_L003_R2 unaligned CPTAC3 ff2a0fdc-1273-4b4d-bf82-18edeff7e15e 0d22761fad1a097e56a883326d91d4ed {"aliquot_tag": "ALQ_b9b4ec99", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00175.RNA-Seq.S15_L004_R1.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R1_001.fastq.gz 3270200911 FASTQ S15_L004_R1 unaligned CPTAC3 0a5b7b7e-c473-4b8d-a522-898fad4ce3f5 46d6c3ae61f1b80b61dd81bea9996edd {"aliquot_tag": "ALQ_8f80c939", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.RNA-Seq.S15_L004_R2.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R2_001.fastq.gz 3455747042 FASTQ S15_L004_R2 unaligned CPTAC3 0fcd97be-12a5-4bd1-83b8-13f1acc67931 6db3a73d1a034a0aed43b61fc8bdfe7a {"aliquot_tag": "ALQ_8f80c939", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.RNA-Seq.transcriptome.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.transcriptome.gdc_realn.bam 7308848016 BAM transcriptome harmonized CPTAC3 4b400ef3-4417-4618-9054-f002cf1e5b4c 56e6d62dc042227cef07126f9fb3250a {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.RNA-Seq.transcriptome.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.transcriptome.gdc_realn.bam 7453969316 BAM transcriptome harmonized CPTAC3 0dcbf8c3-95a1-4ccb-a751-ded95936a0e5 df19ebb7658181866aa6527281d47b47 {"aliquot_tag": "ALQ_b9b4ec99", "gdc_sample_type": "Primary Tumor"} -C3N-00175.WGS.A C3N-00175 LUAD WGS tissue_normal CPT0013910008 CPT0013910008.WholeGenome.RP-1303.bam 53876786195 BAM aligned CPTAC3 7658a7ec-24c1-4e76-9c04-71f189474c8a 56b3a6c65527960675d08a47da25d9f9 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.WGS.A.hg38 C3N-00175 LUAD WGS tissue_normal CPT0013910008 1c2f8561-ee00-4a24-ab6b-1a8dbb217c22_wgs_gdc_realn.bam 79801921461 BAM harmonized CPTAC3 a5358892-785c-42d6-a9f2-a7ebab668e86 1b773f25f899bd7f48137e5bfe8f515a {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.WGS.N C3N-00175 LUAD WGS blood_normal CPT0016600002 CPT0016600002.WholeGenome.RP-1303.bam 61278755456 BAM aligned CPTAC3 0bc9c0c8-ad4d-48eb-8dce-77283559e8e8 ead8a7333c3465cffcc2c236b185042d {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal"} -C3N-00175.WGS.N.hg38 C3N-00175 LUAD WGS blood_normal CPT0016600002 6597d396-2d89-4fc9-b95a-03945f2de357_gdc_realn.bam 88977583390 BAM harmonized CPTAC3 b6d1587d-6b28-404a-b179-969c4d7c20cc 26670d0f03cefd1fb6ca8a2ed55720c6 {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal"} -C3N-00175.WGS.T C3N-00175 LUAD WGS tumor CPT0013880009 CPT0013880009.WholeGenome.RP-1303.bam 60091651175 BAM aligned CPTAC3 6936007d-339d-4e88-ab25-41e0e3588f76 284740af6807cbe3775238397217f31a {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor"} -C3N-00175.WGS.T.hg38 C3N-00175 LUAD WGS tumor CPT0013880009 0750c130-b7f0-4f82-9579-188f3e1705e0_gdc_realn.bam 87305266378 BAM harmonized CPTAC3 1a42a490-4fec-4580-9c98-5f09f2c6e1e8 336dfdbf667c989d36c9d19fba86cc24 {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor"} -C3N-00175.WXS.A C3N-00175 LUAD WXS tissue_normal CPT0013910008 CPT0013910008.WholeExome.RP-1303.bam 29334461483 BAM aligned CPTAC3 c81739ab-a4d2-45b9-ac69-009a5319adf9 6c703a709382c55e4010058c9fbf2c1c {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.WXS.A.hg38 C3N-00175 LUAD WXS tissue_normal CPT0013910008 1c2f8561-ee00-4a24-ab6b-1a8dbb217c22_wxs_gdc_realn.bam 39865354609 BAM harmonized CPTAC3 0608421f-4270-4955-8107-5ddee052c00e 22740a0356b0b01351075dcf98007f39 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00175.WXS.N C3N-00175 LUAD WXS blood_normal CPT0016600002 CPT0016600002.WholeExome.RP-1303.bam 28208345401 BAM aligned CPTAC3 93258bef-4417-4013-a958-ed7f17fdac24 c2a0ae623af7530af36d182140cd9c40 {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal"} -C3N-00175.WXS.N.hg38 C3N-00175 LUAD WXS blood_normal CPT0016600002 6597d396-2d89-4fc9-b95a-03945f2de357_gdc_realn.bam 38865744717 BAM harmonized CPTAC3 24538492-8d08-4e27-a491-5777be4e7ef7 1a12b983dfaa5347452b1bb6863b7cc4 {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal"} -C3N-00175.WXS.T C3N-00175 LUAD WXS tumor CPT0013880009 CPT0013880009.WholeExome.RP-1303.bam 24433804525 BAM aligned CPTAC3 c21346db-461c-4a13-a748-254ff0d5ac6d 068940115956deaa78f618db11d9b63a {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor"} -C3N-00175.WXS.T.hg38 C3N-00175 LUAD WXS tumor CPT0013880009 0750c130-b7f0-4f82-9579-188f3e1705e0_gdc_realn.bam 33129120813 BAM harmonized CPTAC3 95010f7e-be2f-43c0-b865-99fe950b2aac 6f7dde321fe6a42da0785741ae33bec5 {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_45bd0790.miRNA-Seq.S37_L003_R1.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020110006 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L003_R1_001.unaln.bam 296557040 BAM S37_L003_R1 unaligned CPTAC3 69762e2a-0ebe-4992-b488-b2254a56fc73 a0c4a7b3e502dd8bef599ff11b5e0b77 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_45bd0790.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020110006 b7012c66-1737-4039-b773-6f86acc15a53_mirnaseq_gdc_realn.bam 324585628 BAM harmonized CPTAC3 23a0facc-55b6-409e-8648-a3f59c89c860 50a128c1004c4d7d989cd492a2e97e43 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_45bd0790.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.chimeric.gdc_realn.bam 67379430 BAM chimeric harmonized CPTAC3 e3442666-18dc-4f06-b6dd-57826561687d 4231250a57f3739324e7c316c9072ad8 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_45bd0790.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.genomic.gdc_realn.bam 6772079184 BAM genomic harmonized CPTAC3 1f342cd2-1f5f-4126-96d5-aa8a87d95f1d 78973b48e565ddce89184b7cf5034350 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_45bd0790.RNA-Seq.S10_L003_R1.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3145536294 FASTQ S10_L003_R1 unaligned CPTAC3 5168c8a9-b730-40ea-aab2-8ef26109a4e0 1f71872041a5688f83c75a7642cca2d3 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_45bd0790.RNA-Seq.S10_L003_R2.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3680735728 FASTQ S10_L003_R2 unaligned CPTAC3 d4133ba7-00da-4152-9808-f7ae0c7f56dd 97675854c26af7607b2ab2316679734d {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_45bd0790.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.transcriptome.gdc_realn.bam 9229375362 BAM transcriptome harmonized CPTAC3 11b4f75e-2b8c-4024-b395-fdc88cf440e2 8e9866e6269bc3a0dc37c6fc87ec3f78 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_78dd2e20.miRNA-Seq.S41_L003_R1.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020100006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L003_R1_001.unaln.bam 252516870 BAM S41_L003_R1 unaligned CPTAC3 d4160895-9eb9-4926-a951-7abd4496d2cb bdcf9d4f81bd41350b8c92a9c1880e96 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_78dd2e20.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020100006 ef936a66-c615-40f8-a453-5a9fd3a6c66a_mirnaseq_gdc_realn.bam 277438668 BAM harmonized CPTAC3 9ead9508-e3c0-49d5-a104-0d3634bd3ef0 38ef2d744a6bdccffda2a2e43451ca84 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_78dd2e20.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.chimeric.gdc_realn.bam 60576615 BAM chimeric harmonized CPTAC3 8bbe73df-66c1-4bd9-8767-6fb275a1dadb 87821b56e68b410851a97c42b4db7a55 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_78dd2e20.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.genomic.gdc_realn.bam 8172206994 BAM genomic harmonized CPTAC3 1dfb622c-2f64-448b-a297-48ea1b23c150 601fec8a09c4b8dafe0e0d30848aee0e {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_78dd2e20.RNA-Seq.S5_L002_R1.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 3912700020 FASTQ S5_L002_R1 unaligned CPTAC3 159f5da6-9d77-46ca-9686-54a96c23a746 3fd7bd18a9a92a1d1a9bf63ef32c4e34 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_78dd2e20.RNA-Seq.S5_L002_R2.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4483396676 FASTQ S5_L002_R2 unaligned CPTAC3 91158ace-2be6-4c55-9843-3ba72f96210e 56bc32f9910a6ab06443202f57adf23c {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_78dd2e20.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.transcriptome.gdc_realn.bam 11360843616 BAM transcriptome harmonized CPTAC3 32d2bb16-2140-4029-8493-a0d242799189 12d1dc6089222dbf6a1ee2cdcd2db988 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_d5021a01.MethArray.Green.T C3N-00177 CCRCC Methylation_Array tumor CPT0020110009 204372030127_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5dbad71a-9e2f-4fbd-9b43-a93aa49871e1 5c45a3d0f9afc209315f65f081da1d44 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_d5021a01.MethArray.Red.T C3N-00177 CCRCC Methylation_Array tumor CPT0020110009 204372030127_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 650b2380-5cb8-4293-9962-37751da2eb9b 4819e7ba19cebe44cf8321ac77bbe4c6 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_d5021a01.WGS.T C3N-00177 CCRCC WGS tumor CPT0020110009 CPT0020110009.WholeGenome.RP-2158.bam 27213331894 BAM aligned CPTAC3 b30c9b4f-bc93-4d2d-a825-a26a1e36e109 6eac431e62b7115101d9bf2cea512649 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_d5021a01.WGS.T.hg38 C3N-00177 CCRCC WGS tumor CPT0020110009 191d812e-c618-4fb1-a76f-5955cc05dfe7_wgs_gdc_realn.bam 85377431780 BAM harmonized CPTAC3 a3989483-e1b2-42e7-a2a0-0c28be90ea91 0ac694a0e8ffaa6d60c97076522580f9 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_d5021a01.WXS.T C3N-00177 CCRCC WXS tumor CPT0020110009 CPT0020110009.WholeExome.RP-1303.bam 42726526811 BAM aligned CPTAC3 42cecb4e-94d3-42ad-bf0e-7842d5613584 b6a76b6c0c35fa4e9dfbeae63d4466a4 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_d5021a01.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020110009 191d812e-c618-4fb1-a76f-5955cc05dfe7_wxs_gdc_realn.bam 58215211935 BAM harmonized CPTAC3 7e305b0a-ceaf-4202-b0ca-5b66858db2b3 25bfe291eae044165bf75deeddd4f63a {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_e86233b1.MethArray.Green.T C3N-00177 CCRCC Methylation_Array tumor CPT0020100009 204372030015_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 fb185869-c601-4b10-a7db-d29290abb158 891de13410a2bd6fae6020c410279d54 {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_e86233b1.MethArray.Red.T C3N-00177 CCRCC Methylation_Array tumor CPT0020100009 204372030015_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 f90a1a63-9670-46b4-87b3-e4559d65c14a e21e74e96a40f2380b3e7c37a1e7379b {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_e86233b1.WGS.T C3N-00177 CCRCC WGS tumor CPT0020100009 CPT0020100009.WholeGenome.RP-2158.bam 26061030355 BAM aligned CPTAC3 028aba2f-bc3e-4c56-acee-ddd7d5672506 a5855c6b7a8ca5169140659c2b3723c3 {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_e86233b1.WGS.T.hg38 C3N-00177 CCRCC WGS tumor CPT0020100009 9acbf83f-06fb-4cd0-907c-48265a2267e7_wgs_gdc_realn.bam 79865488348 BAM harmonized CPTAC3 d2571876-11d3-4fae-80fd-d1b2326a4297 08afac545dc1a39f16ab85db2c5e6d29 {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_e86233b1.WXS.T C3N-00177 CCRCC WXS tumor CPT0020100009 CPT0020100009.WholeExome.RP-1303.bam 23339788892 BAM aligned CPTAC3 aae33b25-9b1c-4cb6-bb84-355ac6d327dd d041a5ebae8c8dbeeb70f54d07bd74ff {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.DUP_e86233b1.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020100009 9acbf83f-06fb-4cd0-907c-48265a2267e7_wxs_gdc_realn.bam 32605127052 BAM harmonized CPTAC3 cfa77a27-2dbd-408b-ab9b-a4cbfd3fc8aa e4c55c3fc1e01401984e95ba15735c0f {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00177.MethArray.Green.A C3N-00177 CCRCC Methylation_Array tissue_normal CPT0020130009 204930640108_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f9a38d7a-3d66-4450-82d3-a36a16c75bda 7f4706748e560932826f2ece820bcc07 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.MethArray.Green.T C3N-00177 CCRCC Methylation_Array tumor CPT0020120009 202163530120_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2e2ab89d-69cd-4444-b362-132710728236 fb795354a15ded3dc82ecd9599c74e76 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.MethArray.Red.A C3N-00177 CCRCC Methylation_Array tissue_normal CPT0020130009 204930640108_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 8fdcc6f0-fc49-4c4b-83d4-dc4d94dc7168 a4522163fff235957c925e2bc7778e36 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.MethArray.Red.T C3N-00177 CCRCC Methylation_Array tumor CPT0020120009 202163530120_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 37c14ea5-039b-4d47-be5d-b4393cfc07ae 598d0f391d3c17913c4ba0ff696c36f6 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.miRNA-Seq.A.hg38 C3N-00177 CCRCC miRNA-Seq tissue_normal CPT0020130006 2f256d82-3292-46ed-895d-1dd93157b9cf_mirnaseq_gdc_realn.bam 194262654 BAM harmonized CPTAC3 5c607d02-4066-43de-9dc0-e11eec99cd4e 9c10b81eff3cee22e037047a57fcc176 {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.miRNA-Seq.S1_L003_R1.A C3N-00177 CCRCC miRNA-Seq tissue_normal CPT0020130006 181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L003_R1_001.unaln.bam 175724852 BAM S1_L003_R1 unaligned CPTAC3 bae96ec4-bd0b-4612-a9be-b4910a352c3e 82d860de5fb2911585cd1eeba28aa8c4 {"aliquot_tag": "ALQ_3f7d54f0", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.miRNA-Seq.S30_L004_R1.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020120006 181012_UNC32-K00270_0124_AH223CBBXY_GATCAG_S30_L004_R1_001.unaln.bam 197900007 BAM S30_L004_R1 unaligned CPTAC3 03674905-7401-4bb7-97dc-e98860c70f0f fce4497c2bc5842485daa83c81b4d8d1 {"aliquot_tag": "ALQ_21d7d40", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020120006 a4f95d10-ded6-4d2e-98e0-432dad710060_mirnaseq_gdc_realn.bam 216231235 BAM harmonized CPTAC3 59f5e113-e0a5-469a-afa1-314dada0eff5 c9aa4b357f36c543f01f5b9489a5bafa {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor"} -C3N-00177.RNA-Seq.chimeric.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.chimeric.gdc_realn.bam 58809223 BAM chimeric harmonized CPTAC3 926ea5fa-13b4-4525-8773-bcf41f2fe889 f72b1aefe5804aa88752100957a22aa2 {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.chimeric.gdc_realn.bam 134424434 BAM chimeric harmonized CPTAC3 ad83c349-9c6a-4e7c-8c6a-d0d5315bc8f2 b82eb859eee697e0e89916858d605c2b {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor"} -C3N-00177.RNA-Seq.genomic.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.genomic.gdc_realn.bam 8882196611 BAM genomic harmonized CPTAC3 1a11501f-7b75-41da-8d1e-91eadc9be208 8f642bf62981e48601f1fc5a6a967d6a {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.genomic.gdc_realn.bam 9176824088 BAM genomic harmonized CPTAC3 9d66613e-7e7f-4b30-8f60-4f3b102e3d65 43100c00efe53a2c1bde326c7f05b8fd {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor"} -C3N-00177.RNA-Seq.S14_L004_R1.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 4263901863 FASTQ S14_L004_R1 unaligned CPTAC3 b8a098a2-0c11-491d-bc3a-d3c21eb5a586 aa30adf9949628832c2942bd34000ad8 {"aliquot_tag": "ALQ_21d7d40", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.RNA-Seq.S14_L004_R2.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4692956854 FASTQ S14_L004_R2 unaligned CPTAC3 de966bf1-639f-4af1-ac68-47e9ab1b9c34 e1ce0b46176c2b7c3691732897ebf8db {"aliquot_tag": "ALQ_21d7d40", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00177.RNA-Seq.S2_L007_R1.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R1_001.fastq.gz 4582858913 FASTQ S2_L007_R1 unaligned CPTAC3 1b370e43-38d6-41da-b8b2-06f202915f09 4b3d8c80cc152b166578368e85460058 {"aliquot_tag": "ALQ_3f7d54f0", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.RNA-Seq.S2_L007_R2.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R2_001.fastq.gz 4068186798 FASTQ S2_L007_R2 unaligned CPTAC3 028bb703-224e-41ac-9eef-2733fa19b0e3 836443bb9c90e166cdfa34062771751f {"aliquot_tag": "ALQ_3f7d54f0", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.RNA-Seq.transcriptome.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.transcriptome.gdc_realn.bam 9806723955 BAM transcriptome harmonized CPTAC3 ef3fcb0f-45d7-4bfa-80f6-0d0afc8847fa 44253fd38fe1a683870ef2ecd2ad4863 {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.transcriptome.gdc_realn.bam 12345319975 BAM transcriptome harmonized CPTAC3 961dba90-cd21-4d8a-93bd-472a9f31c1be 25c7dc29c8d6cbc97eb9e6857843beb1 {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor"} -C3N-00177.WGS.A C3N-00177 CCRCC WGS tissue_normal CPT0020130009 CPT0020130009.WholeGenome.RP-1303.bam 60365621788 BAM aligned CPTAC3 479f7eae-73ed-4027-a4b9-1716cd0165d9 5c38539661170749cf9e31d1abcf3af1 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.WGS.A.hg38 C3N-00177 CCRCC WGS tissue_normal CPT0020130009 8d2a8ba1-6e6a-427c-b391-174086a6b893_wgs_gdc_realn.bam 87379085146 BAM harmonized CPTAC3 d477f2bd-d0ba-492d-af41-f88c7a7013d2 256e04d2f85e8439dfb4a1d4ff84ab52 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.WGS.N C3N-00177 CCRCC WGS blood_normal CPT0020940002 CPT0020940002.WholeGenome.RP-1303.bam 59013918771 BAM aligned CPTAC3 5164d953-e7e9-475e-903f-a992bd98a64b 7a10ee565f1a499c2fab7d91bc502e19 {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal"} -C3N-00177.WGS.N.hg38 C3N-00177 CCRCC WGS blood_normal CPT0020940002 6cff16d4-b72c-4bb6-90ef-6c53ca2b7d65_gdc_realn.bam 86498366016 BAM harmonized CPTAC3 95693d6c-ee55-42df-8c55-b4134347a0dc 534dd9de64a00185fe86e0711230155d {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal"} -C3N-00177.WGS.T C3N-00177 CCRCC WGS tumor CPT0020120009 CPT0020120009.WholeGenome.RP-1303.bam 58007690003 BAM aligned CPTAC3 6090cd78-a390-45d7-8ab0-d49c06a20d8f 286d8bccfcc43a81efca046df104031f {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.WGS.T.hg38 C3N-00177 CCRCC WGS tumor CPT0020120009 e4eff64c-93e3-4395-840d-7e7ce9ea9a2e_gdc_realn.bam 85725832424 BAM harmonized CPTAC3 cf3ad856-82dc-4656-9b7c-4c82c13addc9 616ef2cd037621df3eb4d09e9d81aa95 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.WXS.A C3N-00177 CCRCC WXS tissue_normal CPT0020130009 CPT0020130009.WholeExome.RP-1303.bam 23765260708 BAM aligned CPTAC3 c105c4ba-82d0-4766-88b4-00376ec7696d f0e9388289b8ee5540678bdaf3343a68 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.WXS.A.hg38 C3N-00177 CCRCC WXS tissue_normal CPT0020130009 8d2a8ba1-6e6a-427c-b391-174086a6b893_wxs_gdc_realn.bam 31924485035 BAM harmonized CPTAC3 a7e3808f-ec24-4b3c-8abd-232614362c1d ee7744280ee5ce6a58ca3149e0373d29 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00177.WXS.N C3N-00177 CCRCC WXS blood_normal CPT0020940002 CPT0020940002.WholeExome.RP-1303.bam 23799686430 BAM aligned CPTAC3 9ce5eae4-8a70-4c8c-ac8f-b4aa6d236980 cc432cbc23bc272dfff513d010587ff1 {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal"} -C3N-00177.WXS.N.hg38 C3N-00177 CCRCC WXS blood_normal CPT0020940002 6cff16d4-b72c-4bb6-90ef-6c53ca2b7d65_gdc_realn.bam 32589913441 BAM harmonized CPTAC3 eadf6adc-c1f6-4e35-95d4-586f0a56c328 32d4535ea82e941e4c81a2016a099bdb {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal"} -C3N-00177.WXS.T C3N-00177 CCRCC WXS tumor CPT0020120009 CPT0020120009.WholeExome.RP-1303.bam 20655332266 BAM aligned CPTAC3 a8445ab3-a412-4a7e-890f-2ff902695614 7482cf8a9ac1faa31f477c1b829c91d4 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor"} -C3N-00177.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020120009 e4eff64c-93e3-4395-840d-7e7ce9ea9a2e_gdc_realn.bam 28061605475 BAM harmonized CPTAC3 323a01c8-765c-46d4-af30-cd27c56b529b 101b4c16f5b988a7e307fcd434f02bf8 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor"} -C3N-00179.MethArray.Green.T C3N-00179 CM Methylation_Array tumor CPT0019940009 202178770100_R06C01_Grn.idat 13676235 IDAT Green NA CPTAC3 fb8958aa-8382-49b9-a936-01bfb417ac86 65adf800f44d7f06ff4835a66285e045 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor"} -C3N-00179.MethArray.Red.T C3N-00179 CM Methylation_Array tumor CPT0019940009 202178770100_R06C01_Red.idat 13676235 IDAT Red NA CPTAC3 061a782d-b688-4ffd-aefe-1538c5ce339b eec109a4ea0a8b16059a4a989bd97240 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor"} -C3N-00179.miRNA-Seq.A.hg38 C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 10b609f0-b6e9-40a9-9d11-9a20ebd1fbc4_mirnaseq_gdc_realn.bam 181050678 BAM harmonized CPTAC3 03eff811-0027-4e4d-b3d0-2666983fa6a9 3bfcf2c5eacbc0bf19c83ff7a5b767f8 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.miRNA-Seq.S45_L005_R1.T C3N-00179 CM miRNA-Seq tumor CPT0019940014 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L005_R1_001.unaln.bam 184122693 BAM S45_L005_R1 unaligned CPTAC3 9bdd17b5-d312-4dd8-90d2-6858d9bd999a e0eb85e3128bc004a7ce09a0e8f91bf5 {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00179.miRNA-Seq.S48_L002_R1.A C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 181119_UNC31-K00269_0165_AH27WCBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 157988960 BAM S48_L002_R1 unaligned CPTAC3 08b0ea2d-7e07-4125-8103-f520f2d29eae 9338b84c19cb3ce787f4851699611758 {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.miRNA-Seq.T.hg38 C3N-00179 CM miRNA-Seq tumor CPT0019940014 38590989-1eaf-4665-86c5-f1452536afb4_mirnaseq_gdc_realn.bam 192722490 BAM harmonized CPTAC3 e1935714-a35e-41f5-a5c1-2313ddc36543 58c45f3c6ebc494a741c186d19d9eb25 {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor"} -C3N-00179.RNA-Seq.chimeric.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.chimeric.gdc_realn.bam 23565563 BAM chimeric harmonized CPTAC3 c6e615d2-cccf-4c24-ae20-c5e4e4d2b0de 9ec4892fd2e95998731e792dd69deb41 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.RNA-Seq.chimeric.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.chimeric.gdc_realn.bam 77306360 BAM chimeric harmonized CPTAC3 4831222a-44f0-4282-b596-95110837d8db 9fa202043a2489313338ffefd7bb163c {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor"} -C3N-00179.RNA-Seq.genomic.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.genomic.gdc_realn.bam 8126581405 BAM genomic harmonized CPTAC3 6fc3617f-7e62-4570-88b6-9fd0239737da 1c64ba20c29457a85cc3dc47123bfb72 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.RNA-Seq.genomic.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.genomic.gdc_realn.bam 8761983609 BAM genomic harmonized CPTAC3 50bf43e6-c03a-40ee-8105-14a0356e7d1f 7eebc2308ecc247650581431e447248e {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor"} -C3N-00179.RNA-Seq.S20_L007_R1.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R1_001.fastq.gz 4091212668 FASTQ S20_L007_R1 unaligned CPTAC3 c69b3f60-5fb1-440d-9793-7ca8fd1dccff a958f73e3006372b66e8653ecd6748cc {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00179.RNA-Seq.S20_L007_R2.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R2_001.fastq.gz 4188871815 FASTQ S20_L007_R2 unaligned CPTAC3 7a07e79b-3f83-4cdf-9957-db1cfc0e4617 528c1a833a15207b4adef054b0199604 {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00179.RNA-Seq.S24_L006_R1.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R1_001.fastq.gz 3731834913 FASTQ S24_L006_R1 unaligned CPTAC3 252cb045-94a6-4335-9d51-53610564f87c 8a2636e6b20b9ebbbca9a1cede428588 {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.RNA-Seq.S24_L006_R2.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R2_001.fastq.gz 4030516244 FASTQ S24_L006_R2 unaligned CPTAC3 4e40b7c7-8513-430a-b4a4-5107c563fa1b db3d0a96083dfceb4e1b429b5aba916b {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.RNA-Seq.transcriptome.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.transcriptome.gdc_realn.bam 10000521209 BAM transcriptome harmonized CPTAC3 696ff797-6b82-4148-b34c-480bf2cf80d5 31955f87b8168f6888fdfca01a0d20d6 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.RNA-Seq.transcriptome.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.transcriptome.gdc_realn.bam 10282565582 BAM transcriptome harmonized CPTAC3 38cb58b2-712c-4ed0-b340-7276dae34b79 c26567a792dc99f981e256a83ed6ddfa {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor"} -C3N-00179.WGS.A C3N-00179 CM WGS tissue_normal CPT0019960007 CPT0019960007.WholeGenome.RP-1303.bam 61566329644 BAM aligned CPTAC3 1fe8e64c-8d3c-48e1-a965-8edf3c2c88aa 15b8263adcbdbcaef3893baf19294288 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.WGS.A.hg38 C3N-00179 CM WGS tissue_normal CPT0019960007 16f76fcb-0e0d-4c8a-848a-acd5ecae21f3_wgs_gdc_realn.bam 91277374316 BAM harmonized CPTAC3 a0a68865-2cdf-4e6d-85a6-3d89777f819c 5893c37738118cbc0393ec31f0533c65 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.WGS.N C3N-00179 CM WGS blood_normal CPT0020950002 CPT0020950002.WholeGenome.RP-1303.bam 79165727723 BAM aligned CPTAC3 6fb26724-5ad9-494c-95cd-72680f6b770b 0e72fdb0cd046e7887b1430479489ebc {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal"} -C3N-00179.WGS.N.hg38 C3N-00179 CM WGS blood_normal CPT0020950002 12e57dd9-27e5-49a6-b3bd-8f5403d5fd8a_gdc_realn.bam 117336437768 BAM harmonized CPTAC3 c3e5ef34-7b4b-415c-8ac0-54a3c52bbc93 b45df411c4d49ae2f40727eb4fe47e82 {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal"} -C3N-00179.WGS.T C3N-00179 CM WGS tumor CPT0019940009 CPT0019940009.WholeGenome.RP-1303.bam 85049263077 BAM aligned CPTAC3 950e7c3d-22e2-4b93-bf03-87ddae34bbb2 bafd9be7079b420eefea6b69e2fbd241 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor"} -C3N-00179.WGS.T.hg38 C3N-00179 CM WGS tumor CPT0019940009 0184cb05-f9da-4925-9dc0-0f3d4277cfbb_gdc_realn.bam 126958607323 BAM harmonized CPTAC3 d093aaa8-db7d-4c75-91ef-181679f40c53 b191230ea70c76dba8452c20e49f1e19 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor"} -C3N-00179.WXS.A C3N-00179 CM WXS tissue_normal CPT0019960007 CPT0019960007.WholeExome.RP-1303.bam 29196285352 BAM aligned CPTAC3 e898571a-502a-451b-b5ef-2649c3f798e1 835680486454806ae65263539e01c090 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.WXS.A.hg38 C3N-00179 CM WXS tissue_normal CPT0019960007 16f76fcb-0e0d-4c8a-848a-acd5ecae21f3_wxs_gdc_realn.bam 39774543502 BAM harmonized CPTAC3 4710637f-3154-49a0-8c15-b7d7339b0afc a9372fa302114d38b672706672f79043 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00179.WXS.N C3N-00179 CM WXS blood_normal CPT0020950002 CPT0020950002.WholeExome.RP-1303.bam 26257364618 BAM aligned CPTAC3 56c9e257-a83d-486b-a5b4-c7673cd49471 6131eb0fce769b90728baeadbd898435 {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal"} -C3N-00179.WXS.N.hg38 C3N-00179 CM WXS blood_normal CPT0020950002 12e57dd9-27e5-49a6-b3bd-8f5403d5fd8a_gdc_realn.bam 35901015195 BAM harmonized CPTAC3 86acbda4-0946-4587-8374-f9a714ccf8a4 50d0ffe7ad50efa28731292aeaa01f05 {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal"} -C3N-00179.WXS.T C3N-00179 CM WXS tumor CPT0019940009 CPT0019940009.WholeExome.RP-1303.bam 29105230322 BAM aligned CPTAC3 23dd373f-7142-4c96-b6d1-e8a7200f0c27 d04b6a2840e6cb4edc4ee6c36a5315d2 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor"} -C3N-00179.WXS.T.hg38 C3N-00179 CM WXS tumor CPT0019940009 0184cb05-f9da-4925-9dc0-0f3d4277cfbb_gdc_realn.bam 40182162952 BAM harmonized CPTAC3 13ce8bbb-86e4-493d-aaba-552ad9f36ad1 e876eaf1e7e164ddb5335a32d77b1c22 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.MethArray.Green.A C3N-00180 LUAD Methylation_Array tissue_normal CPT0066810009 203028200023_R06C01_Grn.idat 13676238 IDAT Green NA CPTAC3 0b492eba-0a95-44b8-8395-ffbe0b02ff57 ca98ae48e649fd5e571e5933be3bda3d {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.MethArray.Green.T C3N-00180 LUAD Methylation_Array tumor CPT0066780006 202163530120_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9404b304-66b4-49f7-bb51-3665fa5a5b66 4ec2093987fa10d6c176feac46a730c8 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.MethArray.Red.A C3N-00180 LUAD Methylation_Array tissue_normal CPT0066810009 203028200023_R06C01_Red.idat 13676238 IDAT Red NA CPTAC3 7e812697-b434-4cc0-9a42-9abdb291a884 77b84d0960cec6a468113653ccaedb17 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.MethArray.Red.T C3N-00180 LUAD Methylation_Array tumor CPT0066780006 202163530120_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 7af70b7c-2b63-438f-8bd8-0b1467aa56f9 91e9bd2d24c2cc40910d05fa562b7521 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.miRNA-Seq.A.hg38 C3N-00180 LUAD miRNA-Seq tissue_normal CPT0066810006 6dee0980-d266-442a-bb7c-a42bc0a9d3c8_mirnaseq_gdc_realn.bam 235016716 BAM harmonized CPTAC3 82bb8de8-a719-43ed-a6de-1b3aaa70d5f8 f0fc7080f8e7f8e538dfc806ef75a161 {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.miRNA-Seq.S39_L008_R1.A C3N-00180 LUAD miRNA-Seq tissue_normal CPT0066810006 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L008_R1_001.unaln.bam 212710843 BAM S39_L008_R1 unaligned CPTAC3 5cf834b5-5512-4602-90c2-b92dc1c2e4ae 53917ad98cd76138df9ac301a70eec27 {"aliquot_tag": "ALQ_85286d98", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.miRNA-Seq.S4_L008_R1.T C3N-00180 LUAD miRNA-Seq tumor CPT0066780009 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L008_R1_001.unaln.bam 294676432 BAM S4_L008_R1 unaligned CPTAC3 a06da018-37b1-41da-a6c2-87af39aa8c56 ef706c05e0159abbcdd6e4541e5f790d {"aliquot_tag": "ALQ_e9d1a0ad", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00180.miRNA-Seq.T.hg38 C3N-00180 LUAD miRNA-Seq tumor CPT0066780009 96a4fabc-63e3-46fc-8f72-4a4242399b33_mirnaseq_gdc_realn.bam 326674227 BAM harmonized CPTAC3 85b8833b-6e8d-4736-8e60-34c38cca3b45 c8ba4ed01af923ee374a44e46ca6c449 {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor"} -C3N-00180.RNA-Seq.chimeric.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.chimeric.gdc_realn.bam 94354821 BAM chimeric harmonized CPTAC3 2c8ec5c1-b5ce-4ac7-b4d2-c5cfb57c5830 6bc97c304802fdee1329b886e46d6134 {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.RNA-Seq.chimeric.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.chimeric.gdc_realn.bam 146594694 BAM chimeric harmonized CPTAC3 c0c05314-aab4-4c34-8545-91acce991d84 b1d8e0e0525d2ce086f941c5dc6d2aa2 {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor"} -C3N-00180.RNA-Seq.genomic.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.genomic.gdc_realn.bam 8586873881 BAM genomic harmonized CPTAC3 3f71b12a-76ed-462a-8c8f-bca3fe1682cf b512c28cbed1972d5c3793b6b1fdfbd2 {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.RNA-Seq.genomic.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.genomic.gdc_realn.bam 9161603634 BAM genomic harmonized CPTAC3 7890ceda-6b90-41f4-ae51-0a63ba42aa49 1bdade32f90ad412b22ba6cae6d8ce1b {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor"} -C3N-00180.RNA-Seq.S79_L008_R1.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R1_001.fastq.gz 4098210486 FASTQ S79_L008_R1 unaligned CPTAC3 3889683a-03a1-47b7-9fb1-99e116f77cad 22dee24b417f9b50d2c05a7434c074ca {"aliquot_tag": "ALQ_85286d98", "sample": "S79", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.RNA-Seq.S79_L008_R2.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R2_001.fastq.gz 4442419919 FASTQ S79_L008_R2 unaligned CPTAC3 cc5ab0c7-f4a7-4561-96d4-b526e678a2f5 3ec9a082c0a163f61dd49a85e7a4826b {"aliquot_tag": "ALQ_85286d98", "sample": "S79", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.RNA-Seq.S7_L008_R1.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R1_001.fastq.gz 4282379536 FASTQ S7_L008_R1 unaligned CPTAC3 0f723218-122e-4166-8736-718d17daaa5f d08de05e3c8e68d41446baf042852f7c {"aliquot_tag": "ALQ_e9d1a0ad", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00180.RNA-Seq.S7_L008_R2.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4513843874 FASTQ S7_L008_R2 unaligned CPTAC3 1d1a0d32-fefd-4f8a-9d35-31734b685d02 1e203f8b51264e9dd5c0e8a442664091 {"aliquot_tag": "ALQ_e9d1a0ad", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00180.RNA-Seq.transcriptome.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.transcriptome.gdc_realn.bam 10352549175 BAM transcriptome harmonized CPTAC3 eec2e93b-0ba6-4693-b52a-018d8388b3ae 9a0235beabe57f05d7a7c7f6e1c5d3fa {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.RNA-Seq.transcriptome.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.transcriptome.gdc_realn.bam 9491639798 BAM transcriptome harmonized CPTAC3 3fb5cb62-25d3-4864-95a9-1e62f05e71b6 2657bd387c0f5cc052a161116b6d84c0 {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor"} -C3N-00180.Targeted.T C3N-00180 LUAD Targeted_Sequencing tumor CPT0066780006 CPT0066780006.CustomSelection.RP-1303.PDO-18786.bam 5054326496 BAM aligned CPTAC3 2cc82403-f9b0-4bc2-a498-a3d9e3234b99 ea019aceb3e0d6d41952e9ae51971e2b {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.Targeted.T.hg38 C3N-00180 LUAD Targeted_Sequencing tumor CPT0066780006 1f25a90e-1fea-4361-b8d3-4b14350454dd_targetedsequencing_gdc_realn.bam 6884124166 BAM harmonized CPTAC3 54e91a15-c1a5-48ac-baeb-7a517dfda913 8c60c4306c1c5d27d1b1593ba0a01709 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.WGS.A C3N-00180 LUAD WGS tissue_normal CPT0066810009 CPT0066810009.WholeGenome.RP-1303.bam 62525329360 BAM aligned CPTAC3 6aadd264-9682-4892-8932-58d9c585e436 c55fab84add4857e2568386546bfebd8 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.WGS.A.hg38 C3N-00180 LUAD WGS tissue_normal CPT0066810009 73b5d550-f522-4d2a-b31d-6316b22c2e29_wgs_gdc_realn.bam 91155003871 BAM harmonized CPTAC3 7129e385-3928-4006-84cd-28b2a599c066 eced8b0df6e5dfbcf948d921675f08b2 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.WGS.N C3N-00180 LUAD WGS blood_normal CPT0071670002 CPT0071670002.WholeGenome.RP-1303.bam 106563005881 BAM aligned CPTAC3 74d1f36f-ed0c-4ae7-ba08-5b470b6aae57 1e0754b2e4b4428e55af7894537295e7 {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal"} -C3N-00180.WGS.N.hg38 C3N-00180 LUAD WGS blood_normal CPT0071670002 17383aa4-7eb8-4b1c-9d16-85970c936aba_gdc_realn.bam 168072072373 BAM harmonized CPTAC3 52de0627-016c-459d-8a66-3ed9755f9c51 fc1b98b4c0bd95058da1f435b7868f12 {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal"} -C3N-00180.WGS.T C3N-00180 LUAD WGS tumor CPT0066780006 CPT0066780006.WholeGenome.RP-1303.bam 63676463269 BAM aligned CPTAC3 52950961-9da1-43b6-b0ae-eab01c7c0578 3658914a74a0334ddd9b325ead087f87 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.WGS.T.hg38 C3N-00180 LUAD WGS tumor CPT0066780006 1f25a90e-1fea-4361-b8d3-4b14350454dd_gdc_realn.bam 93964203341 BAM harmonized CPTAC3 1c9d3ed5-a002-41a6-a8fe-6d20faaf75a0 b6bec47a17c485c02cbf6bf445fb880f {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.WXS.A C3N-00180 LUAD WXS tissue_normal CPT0066810009 CPT0066810009.WholeExome.RP-1303.bam 33054755742 BAM aligned CPTAC3 a092cc8d-c1ed-42fa-b3ee-40d502087128 77a50fb350bb7bd3aa0f7072ab6ecbc5 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.WXS.A.hg38 C3N-00180 LUAD WXS tissue_normal CPT0066810009 73b5d550-f522-4d2a-b31d-6316b22c2e29_wxs_gdc_realn.bam 44639736620 BAM harmonized CPTAC3 7c36c6db-ab60-4e7b-abcd-04edd8b9d73d 231791201b744f170c425699ee09b6e4 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00180.WXS.N C3N-00180 LUAD WXS blood_normal CPT0071670002 CPT0071670002.WholeExome.RP-1303.bam 37981556510 BAM aligned CPTAC3 a508f569-c727-45b9-910c-a0873a41d730 001f42bea354533a68da43a9944a8bfc {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal"} -C3N-00180.WXS.N.hg38 C3N-00180 LUAD WXS blood_normal CPT0071670002 17383aa4-7eb8-4b1c-9d16-85970c936aba_gdc_realn.bam 51703140057 BAM harmonized CPTAC3 4c397512-4468-40e1-aca6-d26ab9da1aa3 c2d47a857cca8c4c03e8d31007b1b99a {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal"} -C3N-00180.WXS.T C3N-00180 LUAD WXS tumor CPT0066780006 CPT0066780006.WholeExome.RP-1303.bam 29404094131 BAM aligned CPTAC3 d2a9ccbb-514a-4ced-b6a5-2b94489e46d9 a4d6aacc70a30ff6214aa935b060bc31 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00180.WXS.T.hg38 C3N-00180 LUAD WXS tumor CPT0066780006 1f25a90e-1fea-4361-b8d3-4b14350454dd_gdc_realn.bam 40356955153 BAM harmonized CPTAC3 163dbc0f-5a12-40e7-8b62-880e21db7cdb 2ddb9ff693f9805227f1293b947ad2a5 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_2b767750.MethArray.Green.T C3N-00194 CCRCC Methylation_Array tumor CPT0014180016 204372030076_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 086e61f9-2ea0-429a-929f-b41f394e7262 6da9fbae923a0208ad8d468c3075ae5d {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_2b767750.MethArray.Red.T C3N-00194 CCRCC Methylation_Array tumor CPT0014180016 204372030076_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 63f62462-e276-4816-9bf7-5e64787066a1 78de3a7ffeff2ab0fe4a3cd2cb60c5b2 {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_2b767750.WGS.T C3N-00194 CCRCC WGS tumor CPT0014180016 CPT0014180016.WholeGenome.RP-2158.bam 25484810737 BAM aligned CPTAC3 1940d1d6-f01d-4ad2-bb06-92dc46ff9b37 519baf4946dc5dcd31c3a6aa5bb8bf86 {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_2b767750.WGS.T.hg38 C3N-00194 CCRCC WGS tumor CPT0014180016 dcd9f76f-2677-45ee-b940-43a6d6bda211_wgs_gdc_realn.bam 74676742699 BAM harmonized CPTAC3 5bb6943f-ac96-4f9f-af57-641777931fa4 f1cffff0515dfea152899d9a16a715ba {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_2b767750.WXS.T C3N-00194 CCRCC WXS tumor CPT0014180016 CPT0014180016.WholeExome.RP-1303.bam 17705252447 BAM aligned CPTAC3 1e36b6c9-824c-430b-a1fa-77d176f03cbb dcbd5df4c0db50b6ee24f73e5caa1d9c {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_2b767750.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014180016 dcd9f76f-2677-45ee-b940-43a6d6bda211_wxs_gdc_realn.bam 24747238914 BAM harmonized CPTAC3 e4b47a2f-5808-4e69-a515-a90cf2f680c5 f1e7fff18182bb6cc9f7c6adf352ada4 {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_a38c476e.miRNA-Seq.S11_L001_R1.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014150013 200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L001_R1_001.unaln.bam 354369445 BAM S11_L001_R1 unaligned CPTAC3 5eaf89e1-2e7b-4cf2-8f16-86186018e889 9c977deba896873cff52479e06550e6f {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_a38c476e.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014150013 ba864e1e-dc27-4fe6-b7ca-cbf0ef542db1_mirnaseq_gdc_realn.bam 376906707 BAM harmonized CPTAC3 93f00502-6756-4d3f-ada9-17294cf63cc3 8ec602c1e4e90c2d8de90fe3a4a9f4c6 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_a38c476e.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.chimeric.gdc_realn.bam 58196191 BAM chimeric harmonized CPTAC3 6bacf4d1-e885-470e-8b37-36fb1f06893d 0c3db30159581d63fa7753549427a774 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_a38c476e.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.genomic.gdc_realn.bam 8437030499 BAM genomic harmonized CPTAC3 18ecc38c-97aa-4702-8584-be73cbdd4fd8 ee6809fbf44208049e67d6837962fec4 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_a38c476e.RNA-Seq.S32_L008_R1.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R1_001.fastq.gz 3845736661 FASTQ S32_L008_R1 unaligned CPTAC3 30ae7b78-98bd-4813-b118-7ad3f4c08b1d d8723e8d230e655382db9eafc4b59cd3 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_a38c476e.RNA-Seq.S32_L008_R2.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R2_001.fastq.gz 4609898999 FASTQ S32_L008_R2 unaligned CPTAC3 0e6a7015-d66e-41e9-8a38-844916f4d874 8b121813351d4a1d8292e9ce8d3aee8d {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_a38c476e.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.transcriptome.gdc_realn.bam 11509493454 BAM transcriptome harmonized CPTAC3 8e0ffa33-5e55-4d8d-8797-628000f29ad5 79579fdf3c48765461f25486b4d7ca7d {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_cafd82a0.MethArray.Green.T C3N-00194 CCRCC Methylation_Array tumor CPT0014150006 204367490057_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 04b547a0-8925-41bd-90a2-c03fed68b079 c480050cb219a4b6de2772be1ae2e388 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_cafd82a0.MethArray.Red.T C3N-00194 CCRCC Methylation_Array tumor CPT0014150006 204367490057_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 6398a66e-11da-411f-9ba1-ab5d587d9dc7 8e2c4780c2e3a2f199ece6c0fc4e1b75 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_cafd82a0.WGS.T C3N-00194 CCRCC WGS tumor CPT0014150006 CPT0014150006.WholeGenome.RP-2158.bam 25008035493 BAM aligned CPTAC3 4372c410-6c03-48c6-aed4-8ec390df9a46 0d2218042a3d8261baecf0168da2c000 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_cafd82a0.WGS.T.hg38 C3N-00194 CCRCC WGS tumor CPT0014150006 925f395c-dddd-4771-834b-3cfde3dc615b_wgs_gdc_realn.bam 72587942973 BAM harmonized CPTAC3 447d41fb-811d-440c-a5c3-d482428156a6 663b356a19e0002f42e69a2cd0d63a1a {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_cafd82a0.WXS.T C3N-00194 CCRCC WXS tumor CPT0014150006 CPT0014150006.WholeExome.RP-1303.bam 17787615338 BAM aligned CPTAC3 63d83032-60b8-4186-9fb9-780c884e37db 22fefd453fadac779a3382a86530287f {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_cafd82a0.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014150006 925f395c-dddd-4771-834b-3cfde3dc615b_wxs_gdc_realn.bam 24536587496 BAM harmonized CPTAC3 ab3a0fa6-6f5b-474a-9521-361e1bc3ef86 67828bf82a9f1d009a00ea3c750121d7 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_ccce5a57.miRNA-Seq.S18_L006_R1.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014180018 201209_UNC32-K00270_0265_AHJ55WBBXY_TCATTC_S18_L006_R1_001.unaln.bam 190736084 BAM S18_L006_R1 unaligned CPTAC3 f8776aaf-407b-4b4a-ba44-35f10f241a89 1e84349ac8152ad6f183081c361b5855 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_ccce5a57.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014180018 d6badd14-6dc7-49a5-ac1a-7b70c1e7b059_mirnaseq_gdc_realn.bam 207660767 BAM harmonized CPTAC3 d3141102-ff98-4c15-99eb-664eb2c3cd3d c020698d08be64b46aed9bd4b6cf8590 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_ccce5a57.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.chimeric.gdc_realn.bam 56794376 BAM chimeric harmonized CPTAC3 a166bfc3-66a9-47bd-be83-0bbb748cb476 19ec7ae64570ec995994ab1b37def7c0 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_ccce5a57.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.genomic.gdc_realn.bam 7486322740 BAM genomic harmonized CPTAC3 59b9b555-a334-4022-9d49-45f2bef49b08 343290f10751efa6ea8eb1202b96eb30 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_ccce5a57.RNA-Seq.S20_L005_R1.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 3591666060 FASTQ S20_L005_R1 unaligned CPTAC3 060a52e5-6ab1-4d99-b8b0-673ef07e6fcc 70fa5cd284f6c3e1a955ff9a5da34bf3 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_ccce5a57.RNA-Seq.S20_L005_R2.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4153593395 FASTQ S20_L005_R2 unaligned CPTAC3 799cae3c-ac8c-4fd6-aa65-826a415e4fe2 30986e28625a9f4dc63e361a7d6eacba {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00194.DUP_ccce5a57.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.transcriptome.gdc_realn.bam 10968856577 BAM transcriptome harmonized CPTAC3 b8061828-597b-4b4f-a0f2-9636d6ab69bd 4d7d9cafe6b5c89867b7ea037c88c40c {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00194.MethArray.Green.A C3N-00194 CCRCC Methylation_Array tissue_normal CPT0014130009 204930640023_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dcc4f6ae-71bd-4c14-a008-0c1e5a0f74a4 e2c3df44c127eb99cbac51c621c7f9f7 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.MethArray.Green.T C3N-00194 CCRCC Methylation_Array tumor CPT0014160006 202178770109_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c85167c7-7804-42de-926e-fb8b99657e3e 8cf0fee3df5125285d58cd7a07b794d0 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor"} -C3N-00194.MethArray.Red.A C3N-00194 CCRCC Methylation_Array tissue_normal CPT0014130009 204930640023_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 e7764dad-a78f-421f-9fde-2b968f02ae8b 1a88184b8ad3719d3efc69e8c78de070 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.MethArray.Red.T C3N-00194 CCRCC Methylation_Array tumor CPT0014160006 202178770109_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 6a015b94-23ce-436a-8407-b1bc2d772e2b c2e99335350ed26fcb4d3b84dcc3651c {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor"} -C3N-00194.miRNA-Seq.A.hg38 C3N-00194 CCRCC miRNA-Seq tissue_normal CPT0014130006 abe08b03-6b21-4b10-9d44-8cc2765f6980_mirnaseq_gdc_realn.bam 227715524 BAM harmonized CPTAC3 64f311d7-b90e-40af-825a-844059e91c2e 40a746ee9c4786440e06f7d7e36e3564 {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.miRNA-Seq.S17_L003_R1.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014160009 181113_UNC31-K00269_0164_AH23NNBBXY_GACGAC_S17_L003_R1_001.unaln.bam 213056282 BAM S17_L003_R1 unaligned CPTAC3 de91a0d6-d235-4f68-8023-6545e1f256aa bb2988c1484306422134425eef87ca07 {"aliquot_tag": "ALQ_1de2e5e1", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.miRNA-Seq.S32_L004_R1.A C3N-00194 CCRCC miRNA-Seq tissue_normal CPT0014130006 181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L004_R1_001.unaln.bam 206654645 BAM S32_L004_R1 unaligned CPTAC3 14938d34-2c4f-491c-aa00-4a16a477821b e7decf106bbdaa21ce6dd9e280da84dd {"aliquot_tag": "ALQ_45bd7700", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014160009 33861799-9692-4d43-9fae-7ff2e5d11ed8_mirnaseq_gdc_realn.bam 233524765 BAM harmonized CPTAC3 352e0e22-61ef-4f75-986f-99fd75f39271 cf34e1c71c50f016f78bdc5a96647c6d {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.RNA-Seq.chimeric.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.chimeric.gdc_realn.bam 85161955 BAM chimeric harmonized CPTAC3 f0e81c32-12f0-47c6-b2fb-cff6ce934704 b8f02d863b8405c251a4e172d05616da {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.chimeric.gdc_realn.bam 159909236 BAM chimeric harmonized CPTAC3 505b5e92-f384-4f8c-a540-e9be8a664132 c9f74c4f873d3b96860a4ebf4ff21f4b {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.RNA-Seq.genomic.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.genomic.gdc_realn.bam 7479199248 BAM genomic harmonized CPTAC3 0c62d8d1-9fd9-4900-8fe5-abf344e79cf6 918fc04a659fb1c1a443b8c60023a3db {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.genomic.gdc_realn.bam 7752622434 BAM genomic harmonized CPTAC3 3a9bf6a4-87af-4b89-925a-61c2938f40dd 948e689b8e2b938e274d0bda2ce802ca {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.RNA-Seq.S18_L007_R1.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R1_001.fastq.gz 4083620064 FASTQ S18_L007_R1 unaligned CPTAC3 43a866e7-11b6-48b3-81c2-377c378f1dba 0c9011d4f88db599d727b2652391cd0e {"aliquot_tag": "ALQ_1de2e5e1", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.RNA-Seq.S18_L007_R2.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R2_001.fastq.gz 4432478207 FASTQ S18_L007_R2 unaligned CPTAC3 293d2b6b-a6dd-4849-a306-3bdb55eb8c9f 5d26b582e6be2019e4fe785476665e6c {"aliquot_tag": "ALQ_1de2e5e1", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00194.RNA-Seq.S51_L006_R1.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R1_001.fastq.gz 3773427215 FASTQ S51_L006_R1 unaligned CPTAC3 f731dbe4-b17a-4ea3-86b9-b59a81e70774 f7c49539016ff9e494924301aa65eef1 {"aliquot_tag": "ALQ_45bd7700", "sample": "S51", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.RNA-Seq.S51_L006_R2.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R2_001.fastq.gz 4015911822 FASTQ S51_L006_R2 unaligned CPTAC3 2c87c0be-8651-48c6-bf47-58d04431df4b 1058cff1ec557ccdefede33c4a7a80b7 {"aliquot_tag": "ALQ_45bd7700", "sample": "S51", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.RNA-Seq.transcriptome.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.transcriptome.gdc_realn.bam 9017298404 BAM transcriptome harmonized CPTAC3 fdf524a7-a6d7-49fc-8955-d84b5994ebea 03893b7c3f3ead55dc9d6e024affab72 {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.transcriptome.gdc_realn.bam 10896942595 BAM transcriptome harmonized CPTAC3 496faa9f-9fe0-4da8-b71f-884a0ad9955b 9eee2c58b6522bd0aef98037c6fb85e4 {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor"} -C3N-00194.WGS.A C3N-00194 CCRCC WGS tissue_normal CPT0014130009 CPT0014130009.WholeGenome.RP-1303.bam 60741633084 BAM aligned CPTAC3 47d90595-b4f4-421e-bf93-df9aa1287a20 fe8fd7ee37a830093ef7575ab7b3a317 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.WGS.A.hg38 C3N-00194 CCRCC WGS tissue_normal CPT0014130009 4b1e18e0-4afc-4ab8-92e8-c14e710b852a_wgs_gdc_realn.bam 90297600289 BAM harmonized CPTAC3 39d28b43-8993-4a09-a4d9-ad182f16afdf b16cfff965715ef32424efb8e64c2968 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.WGS.N C3N-00194 CCRCC WGS blood_normal CPT0015040002 CPT0015040002.WholeGenome.RP-1303.bam 78374449069 BAM aligned CPTAC3 36a51486-d088-4acf-8c7d-5bed3b5cb84d 8d90df249ab22b6e08fd42664dda4334 {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal"} -C3N-00194.WGS.N.hg38 C3N-00194 CCRCC WGS blood_normal CPT0015040002 e56a3c11-9494-43fb-899a-fddd5544db14_gdc_realn.bam 113712141377 BAM harmonized CPTAC3 92174e13-6b42-4e96-9989-3a6681e5b71b 73146f4c662c017edca76f936f9538e5 {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal"} -C3N-00194.WGS.T C3N-00194 CCRCC WGS tumor CPT0014160006 CPT0014160006.WholeGenome.RP-1303.bam 73870342333 BAM aligned CPTAC3 d0b094fd-0245-41eb-8f62-8a2f36cfd201 72c54a3a8472a2b6245f5b0d95218dc1 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor"} -C3N-00194.WGS.T.hg38 C3N-00194 CCRCC WGS tumor CPT0014160006 0b810b2c-1913-41fb-9c18-531ad23c35a2_gdc_realn.bam 106083377854 BAM harmonized CPTAC3 bdd054bd-3d73-4896-a97d-48f82b80bbed ad8fc5aab427f3e2a33e17a03a65e2e1 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor"} -C3N-00194.WXS.A C3N-00194 CCRCC WXS tissue_normal CPT0014130009 CPT0014130009.WholeExome.RP-1303.bam 25947593511 BAM aligned CPTAC3 77804049-3b4b-4a63-ada3-b30c4639f264 ac9d9201fba694ca8aac3978c24f5689 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.WXS.A.hg38 C3N-00194 CCRCC WXS tissue_normal CPT0014130009 4b1e18e0-4afc-4ab8-92e8-c14e710b852a_wxs_gdc_realn.bam 35664853902 BAM harmonized CPTAC3 b4850227-4aa2-4aee-ae06-8d61736f3ea4 b4051eb9c4fa8ece6351a296cf82ce3a {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00194.WXS.N C3N-00194 CCRCC WXS blood_normal CPT0015040002 CPT0015040002.WholeExome.RP-1303.bam 25982691380 BAM aligned CPTAC3 dd089558-db98-40c3-86c1-6181c0a015ca 7ad3c3a16eac94a52432fd899344af9a {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal"} -C3N-00194.WXS.N.hg38 C3N-00194 CCRCC WXS blood_normal CPT0015040002 e56a3c11-9494-43fb-899a-fddd5544db14_gdc_realn.bam 35659231947 BAM harmonized CPTAC3 f9ca8cbc-f618-4729-8a2d-0b30eb713436 d11bba2b4a2df74966a6f436e42f14d0 {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal"} -C3N-00194.WXS.T C3N-00194 CCRCC WXS tumor CPT0014160006 CPT0014160006.WholeExome.RP-1303.bam 25034772769 BAM aligned CPTAC3 fa6969fb-a6af-473d-adc6-86259e882103 077556f5a535a1153857d3aeedd723fe {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor"} -C3N-00194.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014160006 0b810b2c-1913-41fb-9c18-531ad23c35a2_gdc_realn.bam 33894653231 BAM harmonized CPTAC3 1062aea7-f6db-438c-88bb-1c8ccbaf7066 26b5815d77a0171e81439038174f8da9 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor"} -C3N-00198.ADD_3cc178b5.MethArray.Green.T C3N-00198 PDA Methylation_Array tumor CPT0014040006 202184990066_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cd8be8ec-1e0b-446b-97f9-74c58f74b580 7e39b437a5f9e36013941655dc332aae {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00198.ADD_3cc178b5.MethArray.Red.T C3N-00198 PDA Methylation_Array tumor CPT0014040006 202184990066_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 f291da5d-56c4-4215-a72a-fa85d1315263 fb9ec17625e02a9115884fe1b5fb4bda {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00198.ADD_3cc178b5.WGS.T C3N-00198 PDA WGS tumor CPT0014040006 CPT0014040006.WholeGenome.RP-1303.bam 73503825918 BAM aligned CPTAC3 31c9bf87-9618-4416-bc5d-523340f89e18 44edd90bf7902b0c886189ff22479dac {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00198.ADD_3cc178b5.WGS.T.hg38 C3N-00198 PDA WGS tumor CPT0014040006 83e23890-6d72-46bb-bfb2-2b37bca0908a_gdc_realn.bam 108570948517 BAM harmonized CPTAC3 bed18881-eb35-444a-8337-54b38f1308f7 8dc023fc8d925d001b195ea4020f3c19 {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00198.ADD_3cc178b5.WXS.T C3N-00198 PDA WXS tumor CPT0014040006 CPT0014040006.WholeExome.RP-1303.bam 29888712685 BAM aligned CPTAC3 685ce81f-0926-4cb9-b965-ebf47273a65e 5000658d6690d414bc6b6baf4bcc89f5 {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00198.ADD_3cc178b5.WXS.T.hg38 C3N-00198 PDA WXS tumor CPT0014040006 83e23890-6d72-46bb-bfb2-2b37bca0908a_gdc_realn.bam 41268545847 BAM harmonized CPTAC3 8a180028-4d0e-4ace-8fdf-46d354cd1148 495e59802eeabc86c2289ef5c3f0cd9a {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00198.miRNA-Seq.S45_L003_R1.T C3N-00198 PDA miRNA-Seq tumor CPT0014040009 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L003_R1_001.unaln.bam 280177556 BAM S45_L003_R1 unaligned CPTAC3 fbe5b2e3-d209-4141-aa37-5475d8221eb1 40d6239697209fae500b5e12f18ee21c {"aliquot_tag": "ALQ_ac7e6524", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00198.miRNA-Seq.T.hg38 C3N-00198 PDA miRNA-Seq tumor CPT0014040009 5b4078bd-967e-4815-a12b-63c52731ac79_mirnaseq_gdc_realn.bam 306024194 BAM harmonized CPTAC3 84845c5b-6901-488a-a67f-1d260a6506ca 5e60aa8a7aaea487c82f5f5ee34d8564 {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor"} -C3N-00198.RNA-Seq.chimeric.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.chimeric.gdc_realn.bam 38894982 BAM chimeric harmonized CPTAC3 3383b839-62e9-4605-a218-e7e91bd27b84 1d1e403502ba39a7a8752484e2bb6aae {"aliquot_tag": "ALQ_d6be3644", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00198.RNA-Seq.chimeric.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.chimeric.gdc_realn.bam 116852002 BAM chimeric harmonized CPTAC3 a97a08f8-6aac-44ff-a199-053278d61aeb 9862691f8c4c6cf89677c9e65f375cf9 {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor"} -C3N-00198.RNA-Seq.genomic.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.genomic.gdc_realn.bam 10759922678 BAM genomic harmonized CPTAC3 448ebc6f-984f-4676-a4fe-7590b932a4ab 11748f12119279bc90cc3c37a71d37e5 {"aliquot_tag": "ALQ_d6be3644", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00198.RNA-Seq.genomic.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.genomic.gdc_realn.bam 8923926457 BAM genomic harmonized CPTAC3 17d2de80-f7a2-4eb6-8106-b55cb11d8dae eb9a57cab00e7f8d53c95ff360883ffe {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor"} -C3N-00198.RNA-Seq.S17_L007_R1.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 4070882648 FASTQ S17_L007_R1 unaligned CPTAC3 9521ce65-a4f8-4dd2-8405-25181cab3d40 21fac064778862138f3ded6ee1e426fd {"aliquot_tag": "ALQ_ac7e6524", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00198.RNA-Seq.S17_L007_R2.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 4421631940 FASTQ S17_L007_R2 unaligned CPTAC3 6bb2e112-a57e-4ba1-bb77-bec322b1c6c5 6dfbaca9ed2a53f37e2ce40c2771afd7 {"aliquot_tag": "ALQ_ac7e6524", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00198.RNA-Seq.S29_L008_R1.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R1_001.fastq.gz 4316890587 FASTQ S29_L008_R1 unaligned CPTAC3 38c25f0d-fa3f-4f7d-816c-f6cb65bff37b e7c1fbde50c6d4a550c2f65b92f8d462 {"aliquot_tag": "ALQ_d6be3644", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00198.RNA-Seq.S29_L008_R2.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R2_001.fastq.gz 4735227665 FASTQ S29_L008_R2 unaligned CPTAC3 c9d12862-a12d-41fc-b8bb-b6aba3457c35 84ceb3250947ca466b885ce81988eb4d {"aliquot_tag": "ALQ_d6be3644", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00198.RNA-Seq.transcriptome.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.transcriptome.gdc_realn.bam 10598334840 BAM transcriptome harmonized CPTAC3 440018d4-0aa9-40bb-9fc9-d013b6ca17da dfe0186876a457cdb9e847168f911669 {"aliquot_tag": "ALQ_d6be3644", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00198.RNA-Seq.transcriptome.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.transcriptome.gdc_realn.bam 10490493547 BAM transcriptome harmonized CPTAC3 b15c3d50-e189-40be-b2af-edf983fe9ee0 488e8fb2a6b191e9cd9ae944d075480c {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor"} -C3N-00198.Targeted.T C3N-00198 PDA Targeted_Sequencing tumor CPT0014040006_1 CPT0014040006_1.CustomSelection.RP-1303.PDO-18786.bam 3574211891 BAM aligned CPTAC3 074fd44b-5177-40fd-b5b1-93503afa6b7d 9eb80c2c462820d75d639017af0b1499 {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor"} -C3N-00198.Targeted.T.hg38 C3N-00198 PDA Targeted_Sequencing tumor CPT0014040006_1 ceb2062d-2258-49a6-91b3-723567d508b6_targetedsequencing_gdc_realn.bam 5285774542 BAM harmonized CPTAC3 0d734bef-2cc3-41b8-a5fc-71538a1eabb6 8f6ead86c5db879a26ea5b874b4f1de4 {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor"} -C3N-00198.WGS.N C3N-00198 PDA WGS blood_normal CPT0015030002 CPT0015030002.WholeGenome.RP-1303.bam 77690530641 BAM aligned CPTAC3 c03ce8f6-c95f-44de-88e3-013463cc2093 4c4e98e4067bb39b5e53215fdb11c8d9 {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal"} -C3N-00198.WGS.N.hg38 C3N-00198 PDA WGS blood_normal CPT0015030002 f4972f37-8e93-4689-b66e-f5dc681dc441_gdc_realn.bam 116213675033 BAM harmonized CPTAC3 48fa18a8-fcbd-4327-bc8c-fe5b78739810 65bb4e8d6bb85620ee73f02fd4dff3a9 {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal"} -C3N-00198.WXS.N C3N-00198 PDA WXS blood_normal CPT0015030002 CPT0015030002.WholeExome.RP-1303.bam 32136308667 BAM aligned CPTAC3 5c7f1576-b0b2-4d49-8f83-ba8d97a39df5 480b052e5175d5f5cf37bf7369e74f5e {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal"} -C3N-00198.WXS.N.hg38 C3N-00198 PDA WXS blood_normal CPT0015030002 f4972f37-8e93-4689-b66e-f5dc681dc441_gdc_realn.bam 43813830812 BAM harmonized CPTAC3 f52843cd-1e14-4700-9730-0e9a089211ce 2685891a454c96e095ddf593ee3c88d2 {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal"} -C3N-00198.WXS.T C3N-00198 PDA WXS tumor CPT0014040006_1 CPT0014040006_1.WholeExome.RP-1303.bam 51297996778 BAM aligned CPTAC3 be68f052-e665-4ef7-8dc8-f32d6491fa9a 1210e36d731b7c7ceb99b1ca37a8162e {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor"} -C3N-00198.WXS.T.hg38 C3N-00198 PDA WXS tumor CPT0014040006_1 ceb2062d-2258-49a6-91b3-723567d508b6_wxs_gdc_realn.bam 70339229416 BAM harmonized CPTAC3 623063b2-3df5-40e3-a25f-8acd1bc25d5e 8aa3a6a8209be11c497b6a02269506ad {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor"} -C3N-00199.MethArray.Green.A C3N-00199 LUAD Methylation_Array tissue_normal CPT0014290009 203027390081_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1b6aea35-4b7b-4b20-9e5c-6c9209e27564 bf15f2f1f0627a2a4b3dc6e9b67f2c65 {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.MethArray.Green.T C3N-00199 LUAD Methylation_Array tumor CPT0014260006 202184900105_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f602b1d1-7193-4817-b1ec-709eab5ab140 cdf2b0e2f7dc423d5ece25e7f6c247dd {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor"} -C3N-00199.MethArray.Red.A C3N-00199 LUAD Methylation_Array tissue_normal CPT0014290009 203027390081_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 59edd2ae-d26c-43d4-93a9-97981aee7fe7 ee5559ab2a45adde19bec546019a4401 {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.MethArray.Red.T C3N-00199 LUAD Methylation_Array tumor CPT0014260006 202184900105_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 04cf04a5-247c-470a-875d-a182fb561c80 d3c41039a6c87585a79be80e8fcb9095 {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor"} -C3N-00199.miRNA-Seq.A.hg38 C3N-00199 LUAD miRNA-Seq tissue_normal CPT0014290006 15ae0c72-8a86-4890-b52c-fdda4f0155ee_mirnaseq_gdc_realn.bam 274412882 BAM harmonized CPTAC3 289b2f50-d0e2-4314-b22e-878b438bba90 436b1d566feb5d2c79664e356323cd24 {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.miRNA-Seq.S30_L008_R1.A C3N-00199 LUAD miRNA-Seq tissue_normal CPT0014290006 181108_UNC31-K00269_0162_AH255GBBXY_GCCAAT_S30_L008_R1_001.unaln.bam 248314312 BAM S30_L008_R1 unaligned CPTAC3 b81f49dd-2804-4154-a1bf-d5d13b59b0d6 8a4fea55896f647efb6a63856b58a689 {"aliquot_tag": "ALQ_89991d0f", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.miRNA-Seq.S46_L003_R1.T C3N-00199 LUAD miRNA-Seq tumor CPT0014260009 181012_UNC32-K00270_0124_AH223CBBXY_ATGAGC_S46_L003_R1_001.unaln.bam 190084361 BAM S46_L003_R1 unaligned CPTAC3 49a32859-64cd-464a-9c7a-3ce7c3f98e6c da0b91c5964fd4f9e2fc73f95ac2c452 {"aliquot_tag": "ALQ_9b76974f", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00199.miRNA-Seq.T.hg38 C3N-00199 LUAD miRNA-Seq tumor CPT0014260009 94f04539-d4d9-4d12-ab64-de6382b959ee_mirnaseq_gdc_realn.bam 205537349 BAM harmonized CPTAC3 dbd079ea-0916-4694-b323-25a3c8afb335 cc3abc20aa1a436e95e3bdc6627b1132 {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor"} -C3N-00199.RNA-Seq.chimeric.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.chimeric.gdc_realn.bam 123431101 BAM chimeric harmonized CPTAC3 542f15f4-db6e-4eb0-bfa7-cf8317c5c9c4 96124b884f8063dc8388e167590e99ad {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.RNA-Seq.chimeric.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.chimeric.gdc_realn.bam 145538000 BAM chimeric harmonized CPTAC3 c3bd90d1-3611-4612-8519-e2e3a3df2efd 3260896dcbe1428013cb62a527ea33ba {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor"} -C3N-00199.RNA-Seq.genomic.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.genomic.gdc_realn.bam 7142423942 BAM genomic harmonized CPTAC3 6a882b43-1e18-4b68-834e-900b2512f0e5 18790d5c84abbaed7d4910ff289e096e {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.RNA-Seq.genomic.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.genomic.gdc_realn.bam 7765550740 BAM genomic harmonized CPTAC3 0a604ffc-daad-4018-a7af-b2ffa878a865 91489c8222569c13f38d38fd0fc0af92 {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor"} -C3N-00199.RNA-Seq.S19_L007_R1.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R1_001.fastq.gz 3822441410 FASTQ S19_L007_R1 unaligned CPTAC3 0f457298-17f9-479a-b9f8-94752080825d 7354b54c4165b9c66ef64ffce2e1bb3a {"aliquot_tag": "ALQ_9b76974f", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00199.RNA-Seq.S19_L007_R2.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R2_001.fastq.gz 4133802684 FASTQ S19_L007_R2 unaligned CPTAC3 95de9af0-fc5c-47a7-91d4-5a10565af45e 881f90ff41aeb53298aa408f48b11d5c {"aliquot_tag": "ALQ_9b76974f", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00199.RNA-Seq.S7_L002_R1.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R1_001.fastq.gz 3337555304 FASTQ S7_L002_R1 unaligned CPTAC3 cc616a5c-2e83-4128-a777-a4b64d98b8a5 33e3b6b28d4a4af0e7efc7161b5454da {"aliquot_tag": "ALQ_89991d0f", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.RNA-Seq.S7_L002_R2.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R2_001.fastq.gz 3632090303 FASTQ S7_L002_R2 unaligned CPTAC3 5c4657a3-2bbb-41c4-a849-c35f88650bef 9ad488f920b68c63f15df210a652a0a1 {"aliquot_tag": "ALQ_89991d0f", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.RNA-Seq.transcriptome.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.transcriptome.gdc_realn.bam 8086611731 BAM transcriptome harmonized CPTAC3 77f0ca33-cbff-4630-b09e-d6f64d34bca1 3404aade9530d31fd5b11381f6b0f780 {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.RNA-Seq.transcriptome.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.transcriptome.gdc_realn.bam 9366138674 BAM transcriptome harmonized CPTAC3 a8b1ce52-c568-4b1c-95d2-032188eb343e a7241a238fdd434ae900d7d85d11d61a {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor"} -C3N-00199.WGS.A C3N-00199 LUAD WGS tissue_normal CPT0014290009 CPT0014290009.WholeGenome.RP-1303.bam 50489454596 BAM aligned CPTAC3 5307414c-87a4-4e14-8ad1-34f0c5987fb7 41199e0de8475c30bcadb08d7ca6402e {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.WGS.A.hg38 C3N-00199 LUAD WGS tissue_normal CPT0014290009 42718e3a-c8ab-4f1c-9bdc-2fc86783ba47_wgs_gdc_realn.bam 75047081131 BAM harmonized CPTAC3 db7fe088-256c-49f8-80b4-262b3cae74bc 67f61ec4e4999e976df29715deb3613c {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.WGS.N C3N-00199 LUAD WGS blood_normal CPT0015050002 CPT0015050002.WholeGenome.RP-1303.bam 76109597832 BAM aligned CPTAC3 0a56750f-fc6c-4540-b05a-8e560084f41d 956ff059b601d5caded3a67204c76c50 {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00199.WGS.N.hg38 C3N-00199 LUAD WGS blood_normal CPT0015050002 42bb41e3-aee2-4728-8bb6-2b80fd76c3fd_gdc_realn.bam 114208957587 BAM harmonized CPTAC3 4e6b7526-bb78-4db7-998e-1d9665df32b7 728361ad5d5cab0620eba7e1d6f81ddc {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00199.WGS.T C3N-00199 LUAD WGS tumor CPT0014260006 CPT0014260006.WholeGenome.RP-1303.bam 79976696823 BAM aligned CPTAC3 64ebdacf-9b42-4f20-a628-5b5e1ffb73b5 ffae43b0227f8a46b63591e1cbf6d9b3 {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor"} -C3N-00199.WGS.T.hg38 C3N-00199 LUAD WGS tumor CPT0014260006 a807633b-a292-40f9-870b-b6b9bffeac1f_gdc_realn.bam 118731499784 BAM harmonized CPTAC3 ef7aaeca-ced6-4428-912c-aa6e7d96a436 ab7f984d8c6c912cd948b7ee43e4fade {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor"} -C3N-00199.WXS.A C3N-00199 LUAD WXS tissue_normal CPT0014290009 CPT0014290009.WholeExome.RP-1303.bam 36172503206 BAM aligned CPTAC3 2786d45a-6ff0-4fef-8173-f4c76abdecf6 1a868e099fef4e127ccaf0d3701e96ae {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.WXS.A.hg38 C3N-00199 LUAD WXS tissue_normal CPT0014290009 42718e3a-c8ab-4f1c-9bdc-2fc86783ba47_wxs_gdc_realn.bam 48899594876 BAM harmonized CPTAC3 52a220bd-1caa-44d7-8d67-107eddcb8122 3d3f97cf7585c9a2450a4220c4dd2025 {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00199.WXS.N C3N-00199 LUAD WXS blood_normal CPT0015050002 CPT0015050002.WholeExome.RP-1303.bam 33875019522 BAM aligned CPTAC3 e303e911-a9a0-4c05-be59-9a97a21eda96 142726e43f57db19a95da62f32f56343 {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00199.WXS.N.hg38 C3N-00199 LUAD WXS blood_normal CPT0015050002 42bb41e3-aee2-4728-8bb6-2b80fd76c3fd_gdc_realn.bam 46780269090 BAM harmonized CPTAC3 c646d21a-7317-46e8-afb0-46e08229ab0c 66cbdc48abe0dbe121a3234b9d916880 {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00199.WXS.T C3N-00199 LUAD WXS tumor CPT0014260006 CPT0014260006.WholeExome.RP-1303.bam 24076741998 BAM aligned CPTAC3 e1c10352-ee7c-4e0f-982b-44a165ff3637 80d5fe6cf23d744fecb7ddc94db4a0dc {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor"} -C3N-00199.WXS.T.hg38 C3N-00199 LUAD WXS tumor CPT0014260006 a807633b-a292-40f9-870b-b6b9bffeac1f_gdc_realn.bam 33675105402 BAM harmonized CPTAC3 39c04fe6-5a29-46eb-9a1c-f1f5bb9b0cd8 d489b92cced7306d3820bf0fc7eea265 {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor"} -C3N-00200.MethArray.Green.T C3N-00200 UCEC Methylation_Array tumor CPT0017870006 202178770143_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5a1c036a-e34b-48d8-95bf-d9ce2e646465 bb35c8aad5c4f8f26927eb3cff870a0a {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor"} -C3N-00200.MethArray.Red.T C3N-00200 UCEC Methylation_Array tumor CPT0017870006 202178770143_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 e2f76d0b-963a-4294-adb5-24a57f33fa14 6ea568dc6f05eea1b3f05a8cb756a472 {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor"} -C3N-00200.miRNA-Seq.S28_L002_R1.T C3N-00200 UCEC miRNA-Seq tumor CPT0017870009 180924_UNC31-K00269_0154_AHWTMLBBXX_TATAAT_S28_L002_R1_001.unaln.bam 242354930 BAM S28_L002_R1 unaligned CPTAC3 a47fc920-a2e5-47e8-84d8-7f58e8086487 7ca95cb7206ba4cfd2a5ba455bbf9821 {"aliquot_tag": "ALQ_36658704", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00200.miRNA-Seq.T.hg38 C3N-00200 UCEC miRNA-Seq tumor CPT0017870009 46a31ff9-04a0-4881-9f74-18f06776913d_mirnaseq_gdc_realn.bam 263298594 BAM harmonized CPTAC3 59fbf5d9-667d-4e3a-8756-1ca458d02116 724139f734f8637a2684723439706028 {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.chimeric.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.chimeric.gdc_realn.bam 50950510 BAM chimeric harmonized CPTAC3 56a860f4-b4d7-4454-8261-513dafd9f9d8 0110bdbeabd796bf23249de813ce64eb {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.chimeric.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.chimeric.gdc_realn.bam 11431766 BAM chimeric harmonized CPTAC3 eece3823-d68a-4802-b4ef-451232341025 b9dfe9f3efe10d34afc0f5fde25d70f1 {"aliquot_tag": "ALQ_9d9543d3", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.genomic.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.genomic.gdc_realn.bam 6443811564 BAM genomic harmonized CPTAC3 c08ee352-f3ff-4acd-9613-75fd7d5baf53 96dff878170785682b06d7b719856608 {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.genomic.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.genomic.gdc_realn.bam 9434567626 BAM genomic harmonized CPTAC3 cd132700-dd5c-46fa-ae97-eb9424ff40fb 10f0a6816e3a0d2aa3617069d696cf5a {"aliquot_tag": "ALQ_9d9543d3", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.S22_L006_R1.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 2821816577 FASTQ S22_L006_R1 unaligned CPTAC3 c9c50554-d2cc-4a32-a115-38a396a175f3 8c902be149cf3131991ae808e84ff5d8 {"aliquot_tag": "ALQ_36658704", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.S22_L006_R2.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3002112939 FASTQ S22_L006_R2 unaligned CPTAC3 95fff05f-06dc-4463-a6b9-9cb88669fe24 6986967a2bd48bb8cd586d29bd4279e6 {"aliquot_tag": "ALQ_36658704", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.S41_R1.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R1_001.fastq.gz 4365257216 FASTQ S41_R1 unaligned CPTAC3 87c4c700-700c-4400-8d8a-579d4e3995d4 a323cbfa19293b18dc7e15c31eb529bd {"aliquot_tag": "ALQ_9d9543d3", "sample": "S41", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.S41_R2.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R2_001.fastq.gz 5194079741 FASTQ S41_R2 unaligned CPTAC3 67cbdb24-9159-4425-a6b8-8ce5399bdb39 7c75230aea59de287e09029084b62098 {"aliquot_tag": "ALQ_9d9543d3", "sample": "S41", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.transcriptome.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.transcriptome.gdc_realn.bam 6076626421 BAM transcriptome harmonized CPTAC3 95dd4f76-241e-418c-af88-a41b50917ab2 5b179cc78cac65b3cb6b52224c9a889f {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor"} -C3N-00200.RNA-Seq.transcriptome.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.transcriptome.gdc_realn.bam 8827213474 BAM transcriptome harmonized CPTAC3 0166e58b-baad-46c2-b7ca-cd39d74b20bd 1b21e19ae7a451f506f2b50aebd82bb6 {"aliquot_tag": "ALQ_9d9543d3", "gdc_sample_type": "Primary Tumor"} -C3N-00200.WGS.N C3N-00200 UCEC WGS blood_normal CPT0028400002 CPT0028400002.WholeGenome.RP-1303.bam 61727176584 BAM aligned CPTAC3 d8d64456-49ee-432f-9890-5b9d82c2f062 40e64c48e88614494410b56ab3da9891 {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00200.WGS.N.hg38 C3N-00200 UCEC WGS blood_normal CPT0028400002 136eb1b9-e1da-4a4d-9637-708e3553ba64_gdc_realn.bam 88313003884 BAM harmonized CPTAC3 636910f0-d39e-4463-abd3-f7dafbbf34fc b21f0bfc42be3843424fe1d5775a5c7e {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00200.WGS.T C3N-00200 UCEC WGS tumor CPT0017870006 CPT0017870006.WholeGenome.RP-1303.bam 64393427552 BAM aligned CPTAC3 5722cf1e-90f7-470a-8697-306e855a9b22 45f2eabc37f65cd47e917455834580c3 {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor"} -C3N-00200.WGS.T.hg38 C3N-00200 UCEC WGS tumor CPT0017870006 7c591788-4359-4ae7-8dc2-6342e4726baa_gdc_realn.bam 92873737605 BAM harmonized CPTAC3 f5332af5-667a-4788-b6c5-0a2690c79255 c6e11c807ede3f4b4dd91c2c79618bdf {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor"} -C3N-00200.WXS.N C3N-00200 UCEC WXS blood_normal CPT0028400002 CPT0028400002.WholeExome.RP-1303.bam 49539788474 BAM aligned CPTAC3 b44d5974-852f-4a89-9412-9c321bf1d1a9 2f864915614ebb298945d978bd5bf33c {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00200.WXS.N.hg38 C3N-00200 UCEC WXS blood_normal CPT0028400002 136eb1b9-e1da-4a4d-9637-708e3553ba64_gdc_realn.bam 66282520018 BAM harmonized CPTAC3 1d2a42cf-e43c-4ded-8a10-c1c0cc85791a bb1c34ad3637e4975c5eac12417e729d {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00200.WXS.T C3N-00200 UCEC WXS tumor CPT0017870006 CPT0017870006.WholeExome.RP-1303.bam 26158709806 BAM aligned CPTAC3 84bbba11-564e-4318-9958-7e1f5f976431 39fbed68f2a3c80c1be09e710750543c {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor"} -C3N-00200.WXS.T.hg38 C3N-00200 UCEC WXS tumor CPT0017870006 7c591788-4359-4ae7-8dc2-6342e4726baa_gdc_realn.bam 35892562926 BAM harmonized CPTAC3 78de42e6-acc0-49ab-8879-7af689f912b0 7186cee7c275445991b5674597aca3bf {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor"} -C3N-00203.MethArray.Green.A C3N-00203 LUAD Methylation_Array tissue_normal CPT0090370009 203028200104_R07C01_Grn.idat 13676238 IDAT Green NA CPTAC3 1660d5d2-2cdc-4915-b8ea-5e0d135aaf97 064872b7b050f76ad749a68f61f37313 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.MethArray.Green.T C3N-00203 LUAD Methylation_Array tumor CPT0090340009 202234360025_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b87a48be-bb58-48a5-92cc-554dc10893d0 7abf0ae83af26ec45f552f0e55f6461c {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor"} -C3N-00203.MethArray.Red.A C3N-00203 LUAD Methylation_Array tissue_normal CPT0090370009 203028200104_R07C01_Red.idat 13676238 IDAT Red NA CPTAC3 f72f6b3d-1a97-4f37-b8a6-48d1744714bb 711c962cb09d34dcab559d956ea935a6 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.MethArray.Red.T C3N-00203 LUAD Methylation_Array tumor CPT0090340009 202234360025_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 1ebcd0bc-acbd-424d-a146-c10600463091 581631286540647a5d26d5785db447f6 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor"} -C3N-00203.miRNA-Seq.A.hg38 C3N-00203 LUAD miRNA-Seq tissue_normal CPT0090370006 6280e220-8539-425e-854c-df61786e84af_mirnaseq_gdc_realn.bam 304133614 BAM harmonized CPTAC3 7c087eb4-ce9f-44d8-b61c-38b451ef2f16 2b734044eccfef2361335eb96c40d829 {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.miRNA-Seq.S32_L003_R1.T C3N-00203 LUAD miRNA-Seq tumor CPT0090340006 181119_UNC31-K00269_0165_AH27WCBBXY_ACTTGA_S32_L003_R1_001.unaln.bam 169748950 BAM S32_L003_R1 unaligned CPTAC3 e2affc4c-42fb-44a7-baee-76d8b6fb3359 f46f75b05651c0b24ca014953f11b8c2 {"aliquot_tag": "ALQ_9dff35bd", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00203.miRNA-Seq.S34_L005_R1.A C3N-00203 LUAD miRNA-Seq tissue_normal CPT0090370006 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L005_R1_001.unaln.bam 279444687 BAM S34_L005_R1 unaligned CPTAC3 a18b465a-65d6-405f-bf81-a8c4ed379e1a 5230744eb132b396f446364a7910f052 {"aliquot_tag": "ALQ_da5f4f6d", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.miRNA-Seq.T.hg38 C3N-00203 LUAD miRNA-Seq tumor CPT0090340006 79eb5963-f996-4fea-b505-ff6e450a716f_mirnaseq_gdc_realn.bam 188536669 BAM harmonized CPTAC3 31e9e7a8-61cb-43ff-8586-df480658fa1f d80c082b017832c23586d9d700735ece {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor"} -C3N-00203.RNA-Seq.chimeric.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.chimeric.gdc_realn.bam 149019983 BAM chimeric harmonized CPTAC3 62f1ddea-e801-4ab6-b8ae-65b3ef959db0 203b09f2fd9b62c7f51fc61768bf16e8 {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.RNA-Seq.chimeric.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.chimeric.gdc_realn.bam 65764281 BAM chimeric harmonized CPTAC3 4e68de80-869c-40a9-a037-f10533abe5b5 4ab1180ebd865b0a7d0e047802d9d5e4 {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor"} -C3N-00203.RNA-Seq.genomic.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.genomic.gdc_realn.bam 9224378228 BAM genomic harmonized CPTAC3 0dcd3218-6d65-443a-a060-124180860c79 13fa1f417573871a5c3e6c9b61fcb6bc {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.RNA-Seq.genomic.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.genomic.gdc_realn.bam 9846270862 BAM genomic harmonized CPTAC3 c183df4f-d1a2-42ab-bc1e-2fb4079ef4d6 d92612b5c113826b1de84dffbaceaf32 {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor"} -C3N-00203.RNA-Seq.S3_L008_R1.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 4007939340 FASTQ S3_L008_R1 unaligned CPTAC3 b0e1dba1-1694-48ef-90a3-e1424dcc9368 e8c9cd3be97efe38827d01c2fe19f96a {"aliquot_tag": "ALQ_9dff35bd", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00203.RNA-Seq.S3_L008_R2.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4515898489 FASTQ S3_L008_R2 unaligned CPTAC3 b5248075-acbe-4b4b-b323-beec3158afbd 45ab8f13519f7eafe7399957038a49fe {"aliquot_tag": "ALQ_9dff35bd", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00203.RNA-Seq.S4_L006_R1.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R1_001.fastq.gz 4304345078 FASTQ S4_L006_R1 unaligned CPTAC3 fec6fc9a-ee8c-4749-8aa6-d7078dc761c9 61a5ea67939b8ef7bcace8d3a0816207 {"aliquot_tag": "ALQ_da5f4f6d", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.RNA-Seq.S4_L006_R2.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R2_001.fastq.gz 4747925678 FASTQ S4_L006_R2 unaligned CPTAC3 d25781de-729a-4f02-81ec-04a384c09768 004e8b7611cb903aaac53aa307a2f332 {"aliquot_tag": "ALQ_da5f4f6d", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.RNA-Seq.transcriptome.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.transcriptome.gdc_realn.bam 11389908265 BAM transcriptome harmonized CPTAC3 ef6f0cb7-6617-44ab-aabc-e725f601d010 d36b41557247f2587c9a1724011a7c58 {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.RNA-Seq.transcriptome.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.transcriptome.gdc_realn.bam 10982533627 BAM transcriptome harmonized CPTAC3 7dfb2e3f-d2d3-4045-b11f-5984d2b6dccd cd67e9b3014a2ca34bb767268107efe9 {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor"} -C3N-00203.WGS.A C3N-00203 LUAD WGS tissue_normal CPT0090370009 CPT0090370009.WholeGenome.RP-1303.bam 52227247941 BAM aligned CPTAC3 3e868879-73a1-45b8-91c5-dd58b028528e a09897cd539e8667391ddd5fff46b393 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.WGS.A.hg38 C3N-00203 LUAD WGS tissue_normal CPT0090370009 6abce0dc-8025-44d7-b9d3-de1485bdff1a_wgs_gdc_realn.bam 75735181774 BAM harmonized CPTAC3 f82b6841-51cd-4bc5-aeb4-d3fd9fafa6cf d2508c92a3b9f4e0447ec7c9e62fb9b0 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.WGS.N C3N-00203 LUAD WGS blood_normal CPT0092480002 CPT0092480002.WholeGenome.RP-1303.bam 73761393060 BAM aligned CPTAC3 2d788109-d360-457e-83ac-277271c3ba22 8d431bb15d3a10a82d83b553fd8f4c68 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00203.WGS.N.hg38 C3N-00203 LUAD WGS blood_normal CPT0092480002 44dee853-c2c4-431f-95d1-cbf3732c0dcd_wgs_gdc_realn.bam 107048598050 BAM harmonized CPTAC3 28205519-c62c-4216-a6a9-c0be3ebf08d6 90a3e9b9601706787d786f9d9f9691d1 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00203.WGS.T C3N-00203 LUAD WGS tumor CPT0090340009 CPT0090340009.WholeGenome.RP-1303.bam 59075981888 BAM aligned CPTAC3 adf12926-154b-4431-a5aa-78120ac10fdb f8003309b561102103eafc8e977e1519 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor"} -C3N-00203.WGS.T.hg38 C3N-00203 LUAD WGS tumor CPT0090340009 506d087f-a4aa-433d-9ecf-a1d908ab50f8_wgs_gdc_realn.bam 86129127596 BAM harmonized CPTAC3 8256f05b-b59c-452b-984d-20cfb560be40 515ce258ff225517cf3698072968f65d {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor"} -C3N-00203.WXS.A C3N-00203 LUAD WXS tissue_normal CPT0090370009 CPT0090370009.WholeExome.RP-1303.bam 27894843772 BAM aligned CPTAC3 08bf3e5a-0627-4bef-951d-c8dd2ea678aa 67b551f8abbbb02800cf8dad635ca31d {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.WXS.A.hg38 C3N-00203 LUAD WXS tissue_normal CPT0090370009 6abce0dc-8025-44d7-b9d3-de1485bdff1a_wxs_gdc_realn.bam 38190691759 BAM harmonized CPTAC3 fc410ff5-c375-4af3-8069-162cbf2fee40 23c9855c02b2ab3cfc2b3b434524509c {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00203.WXS.N C3N-00203 LUAD WXS blood_normal CPT0092480002 CPT0092480002.WholeExome.RP-1303.bam 30695534368 BAM aligned CPTAC3 1df70528-ad3c-462b-8dc4-05e2780c5a99 11e92de24cda74d6eaa558159c619ba6 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00203.WXS.N.hg38 C3N-00203 LUAD WXS blood_normal CPT0092480002 44dee853-c2c4-431f-95d1-cbf3732c0dcd_wxs_gdc_realn.bam 40027821219 BAM harmonized CPTAC3 2fe6e909-0589-4171-8a94-d56ba8d405fd 9b900a75f0def56e1a1ed580cb444eb4 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal"} -C3N-00203.WXS.T C3N-00203 LUAD WXS tumor CPT0090340009 CPT0090340009.WholeExome.RP-1303.bam 36812835755 BAM aligned CPTAC3 636bf99a-9def-4a45-b48b-c9768cf4f040 9ca9c614b226d344f1595e1eb046d287 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor"} -C3N-00203.WXS.T.hg38 C3N-00203 LUAD WXS tumor CPT0090340009 506d087f-a4aa-433d-9ecf-a1d908ab50f8_wxs_gdc_realn.bam 50716539875 BAM harmonized CPTAC3 fbd9d3c3-115a-4637-b326-a6e3e7c8dc51 c2a096eed8c33ba5ed66bd88d3fba313 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor"} -C3N-00204.MethArray.Green.T C3N-00204 HNSCC Methylation_Array tumor CPT0084630012 202234370093_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 283019c7-2d58-448e-90ce-9a6b5b93c169 e9c3c46e347bb50685a49d66ac7e138d {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor"} -C3N-00204.MethArray.Red.T C3N-00204 HNSCC Methylation_Array tumor CPT0084630012 202234370093_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 875e6b1b-a7f0-4b9d-bbdf-a6326e69ee2a fa49cb0e09afc26afd51891ca026f27e {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor"} -C3N-00204.miRNA-Seq.A.hg38 C3N-00204 HNSCC miRNA-Seq tissue_normal CPT0084650007 107f6b41-82ae-401f-9594-8eaf5d165bee_mirnaseq_gdc_realn.bam 201025216 BAM harmonized CPTAC3 6b5bcbb4-b5c6-4e4b-8784-760828191745 efbe8c167e59f033715db5e79ee444f3 {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00204.miRNA-Seq.S29_L008_R1.T C3N-00204 HNSCC miRNA-Seq tumor CPT0084630015 180724_UNC32-K00270_0106_BHWK3MBBXX_GCCAAT_S29_L008_R1_001.unaln.bam 281312599 BAM S29_L008_R1 unaligned CPTAC3 dc6a7c5e-5930-4e20-820b-b044d7f29089 b2a39de198ef1e6e55f8a0e8fa40fe99 {"aliquot_tag": "ALQ_c7e53c68", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00204.miRNA-Seq.S2_L001_R1.A C3N-00204 HNSCC miRNA-Seq tissue_normal CPT0084650007 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 178891074 BAM S2_L001_R1 unaligned CPTAC3 ebb676c1-fae3-40cb-9944-0c4519ae5dd9 317489c58609366a30c84d40160ca676 {"aliquot_tag": "ALQ_bfb099a5", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00204.miRNA-Seq.T.hg38 C3N-00204 HNSCC miRNA-Seq tumor CPT0084630015 2cd497e1-6505-47b8-8765-6cf8a7f4f381_mirnaseq_gdc_realn.bam 295915377 BAM harmonized CPTAC3 220b2e6a-21c8-43a4-8c95-b6283981ad77 cca33175d73f7f722a8c63fb30c88ea4 {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.chimeric.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.chimeric.gdc_realn.bam 28817736 BAM chimeric harmonized CPTAC3 ab0cb2af-9844-4419-be4b-917f9d34969b 9a5611fcb8111652bdf1ddae48b2aba5 {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00204.RNA-Seq.chimeric.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.chimeric.gdc_realn.bam 70796344 BAM chimeric harmonized CPTAC3 a2e53ae5-adb9-46ef-81d0-939cceadc000 66fead0b9c896a4d77c64bd0718d535e {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.chimeric.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.chimeric.gdc_realn.bam 300349521 BAM chimeric harmonized CPTAC3 3f583db0-7cb6-415e-af96-c7f7e18c8aac a70cfb844a9d54c2e76f4a5d7532df11 {"aliquot_tag": "ALQ_9f6103a5", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.genomic.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.genomic.gdc_realn.bam 9282512306 BAM genomic harmonized CPTAC3 bef77779-0017-4ea2-974f-cb6c6bffabc2 6523f51b02ef4d4e2c5757d3d98a80c3 {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00204.RNA-Seq.genomic.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.genomic.gdc_realn.bam 8561131904 BAM genomic harmonized CPTAC3 1dced3ca-9b4b-4839-ad6e-383c24adc9f1 405ced5bc7486c8c5ca791fdebaa1065 {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.genomic.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.genomic.gdc_realn.bam 14096458087 BAM genomic harmonized CPTAC3 fffa679c-a9ec-45b7-a890-5ba7484ecf4b c7d145f1542926ccc61f4e7d1864efa1 {"aliquot_tag": "ALQ_9f6103a5", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.S13_R1.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R1_001.fastq.gz 8669215519 FASTQ S13_R1 unaligned CPTAC3 02e4024a-9946-47df-8094-f39ff22aebf7 875fa6ac786bfc2bcf19c372e720ab16 {"aliquot_tag": "ALQ_9f6103a5", "sample": "S13", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.S13_R2.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R2_001.fastq.gz 9038794085 FASTQ S13_R2 unaligned CPTAC3 209cd6f7-c9bb-4399-9824-6f47b9ee5c47 1950b378452e3e7aa2c4fd41101be583 {"aliquot_tag": "ALQ_9f6103a5", "sample": "S13", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.S14_L004_R1.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4244512016 FASTQ S14_L004_R1 unaligned CPTAC3 44754663-1cec-42d0-934e-77fd9b38652e a3c0bb2a06040268dbe4a79cd0cd9d81 {"aliquot_tag": "ALQ_c7e53c68", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.S14_L004_R2.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4692864567 FASTQ S14_L004_R2 unaligned CPTAC3 41ab7edc-9e33-4ee6-8a40-66d4a1efef50 f901c98ee3f0fca300805837c19ac65a {"aliquot_tag": "ALQ_c7e53c68", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.S18_L005_R1.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4427440579 FASTQ S18_L005_R1 unaligned CPTAC3 30f4e1e2-0403-4234-83ef-4f2ce782d7ad 8014d5217bffbe60e03ba0a0396b9658 {"aliquot_tag": "ALQ_bfb099a5", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00204.RNA-Seq.S18_L005_R2.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4782581265 FASTQ S18_L005_R2 unaligned CPTAC3 764eb37d-6688-4031-a97b-1bd3336de057 e20c5763f3dd27ac83ae98573bdfcf10 {"aliquot_tag": "ALQ_bfb099a5", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00204.RNA-Seq.transcriptome.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.transcriptome.gdc_realn.bam 14027623473 BAM transcriptome harmonized CPTAC3 e06afed4-0c94-46be-96b3-da96f21f7efd 2c5be1e50d0975e4fb1012a28dc42f3a {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00204.RNA-Seq.transcriptome.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.transcriptome.gdc_realn.bam 11412747756 BAM transcriptome harmonized CPTAC3 644aca7c-f7f2-4559-a233-55514ed7b12c a5781b8713bdb62c3835a1b188cf213e {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor"} -C3N-00204.RNA-Seq.transcriptome.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.transcriptome.gdc_realn.bam 7043952928 BAM transcriptome harmonized CPTAC3 26038071-3f06-462b-a5c3-3ff07f8e4e82 b8e6f5afe5716ce7e33ea9c3847094a9 {"aliquot_tag": "ALQ_9f6103a5", "gdc_sample_type": "Primary Tumor"} -C3N-00204.WGS.N C3N-00204 HNSCC WGS blood_normal CPT0085320002 CPT0085320002.WholeGenome.RP-1303.bam 55897678774 BAM aligned CPTAC3 75f1ffcf-ac51-47e9-87e9-543a1949b0b9 8a2ed6903292699823b0b14a831bdc02 {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00204.WGS.N.hg38 C3N-00204 HNSCC WGS blood_normal CPT0085320002 c93de7f1-762b-4ca7-a1e4-8f959c170856_wgs_gdc_realn.bam 81401583726 BAM harmonized CPTAC3 e448c645-2d99-456b-8e3f-965f5d0b0d10 e03ad3b16f65406d0ca7340317147623 {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00204.WGS.T C3N-00204 HNSCC WGS tumor CPT0084630012 CPT0084630012.WholeGenome.RP-1303.bam 71308873899 BAM aligned CPTAC3 35f357ab-f059-4ed0-82db-61ca0dbae404 05333b427216cea9831806716ac9aba1 {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor"} -C3N-00204.WGS.T.hg38 C3N-00204 HNSCC WGS tumor CPT0084630012 5eab67d6-ad15-43ea-b7d4-265945e3ba09_wgs_gdc_realn.bam 104382998256 BAM harmonized CPTAC3 55f9d24b-032f-46ac-9cf7-f92c767a90c2 9f4410fa4eb26cd397c45c77dbc3b653 {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor"} -C3N-00204.WXS.N C3N-00204 HNSCC WXS blood_normal CPT0085320002 CPT0085320002.WholeExome.RP-1303.bam 25387758674 BAM aligned CPTAC3 d9781140-0b84-4891-9025-429cbaa8bd3e b75f17034e0a06b4c08944a2cd3de77c {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00204.WXS.N.hg38 C3N-00204 HNSCC WXS blood_normal CPT0085320002 c93de7f1-762b-4ca7-a1e4-8f959c170856_wxs_gdc_realn.bam 34063720268 BAM harmonized CPTAC3 ea384a65-ca41-4c64-b65a-16f62bbd9604 b0133868e644ac458c71194d5d007c45 {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00204.WXS.T C3N-00204 HNSCC WXS tumor CPT0084630012 CPT0084630012.WholeExome.RP-1303.bam 49922626049 BAM aligned CPTAC3 d9f42f05-a3ac-4b50-bf96-595185f860d3 102d50fa94dadac76d4b412f2304eaaa {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor"} -C3N-00204.WXS.T.hg38 C3N-00204 HNSCC WXS tumor CPT0084630012 5eab67d6-ad15-43ea-b7d4-265945e3ba09_wxs_gdc_realn.bam 69573604165 BAM harmonized CPTAC3 e5b8a4d8-f631-4852-afd2-8aa05e1a2267 4be77a335c7c413825efe3ec627984a0 {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor"} -C3N-00211.MethArray.Green.T C3N-00211 LSCC Methylation_Array tumor CPT0090440009 202234370119_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b53eacf1-5189-4388-ab8a-ee4fcf8bd8a3 c12f9c2783aa433deee582063063cb21 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor"} -C3N-00211.MethArray.Red.T C3N-00211 LSCC Methylation_Array tumor CPT0090440009 202234370119_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 82b90a99-b0ea-47a6-9988-86afa458c304 4188430680661b8603d5d04a18556a11 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor"} -C3N-00211.miRNA-Seq.S24_L002_R1.T C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTAGCT_S24_L002_R1_001.unaln.bam 734277190 BAM S24_L002_R1 unaligned CPTAC3 be6461f0-fa53-47f5-a156-8d6704c0220e 918485b323551f56574a26d0a612f66e {"aliquot_tag": "ALQ_80fa0505", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00211.miRNA-Seq.T.hg38 C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 036b0644-94e0-4323-9844-df465047b136_mirnaseq_gdc_realn.bam 807988377 BAM harmonized CPTAC3 0f62c070-7891-44dc-9cf4-32f40d9c9ecd 183f3644a5f2a68857f6b717c0088044 {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor"} -C3N-00211.RNA-Seq.chimeric.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.chimeric.gdc_realn.bam 73674455 BAM chimeric harmonized CPTAC3 8909d365-d3fe-4ec8-87fb-21c8b2374f22 029981e4f914961ae3cef4e2e6e62c0c {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor"} -C3N-00211.RNA-Seq.genomic.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.genomic.gdc_realn.bam 8876154296 BAM genomic harmonized CPTAC3 b19bbddb-a88f-4b3c-a074-cc49796f623a 2e3d75e21533e6456962046277addc40 {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor"} -C3N-00211.RNA-Seq.S9_L004_R1.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R1_001.fastq.gz 4078231570 FASTQ S9_L004_R1 unaligned CPTAC3 3c187320-d811-4fd4-ad3f-98b60e63efad 7b76738a7dc5c6819b2c5813af448dcc {"aliquot_tag": "ALQ_80fa0505", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00211.RNA-Seq.S9_L004_R2.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R2_001.fastq.gz 4522993021 FASTQ S9_L004_R2 unaligned CPTAC3 c02c1bc2-0f97-410f-b614-e61afdf267c3 64abaafebb6ced4264e7151b962c29c7 {"aliquot_tag": "ALQ_80fa0505", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00211.RNA-Seq.transcriptome.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.transcriptome.gdc_realn.bam 12963684076 BAM transcriptome harmonized CPTAC3 b1198dfd-06b5-4a71-ad5c-032378482799 dd3351089e1abbb861827d109017a214 {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor"} -C3N-00211.WGS.N C3N-00211 LSCC WGS blood_normal CPT0092490002 CPT0092490002.WholeGenome.RP-1303.bam 66392924448 BAM aligned CPTAC3 565655ed-29be-4590-9413-9441187dc6fb df4eb32914dadd6d13c0daae9c56beb6 {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal"} -C3N-00211.WGS.N.hg38 C3N-00211 LSCC WGS blood_normal CPT0092490002 bbab7603-c304-4c44-a735-91e677083ee9_wgs_gdc_realn.bam 98091811789 BAM harmonized CPTAC3 0ebfa20c-097f-47c4-afb3-9688c6c5b074 a677e14acb4b4c02de45232884e0a72f {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal"} -C3N-00211.WGS.T C3N-00211 LSCC WGS tumor CPT0090440009 CPT0090440009.WholeGenome.RP-1303.bam 73993095860 BAM aligned CPTAC3 82393638-7bf1-4639-8279-37cc17ad003f 1b95bdbed75e9fb814da2ef4ce2e10f3 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor"} -C3N-00211.WGS.T.hg38 C3N-00211 LSCC WGS tumor CPT0090440009 7ac573c7-ed1b-4085-a310-805e1aff4b20_wgs_gdc_realn.bam 108456934879 BAM harmonized CPTAC3 97d83f5f-a371-45c5-8075-bb02b43655ce 13ee85cbee60c8fe7b099684baa3fe39 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor"} -C3N-00211.WXS.N C3N-00211 LSCC WXS blood_normal CPT0092490002 CPT0092490002.WholeExome.RP-1303.bam 40576173962 BAM aligned CPTAC3 25f4a00b-12a4-461a-af6e-bd21d212a224 71ea608011c8b4b79d08a97031ea54f1 {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal"} -C3N-00211.WXS.N.hg38 C3N-00211 LSCC WXS blood_normal CPT0092490002 bbab7603-c304-4c44-a735-91e677083ee9_wxs_gdc_realn.bam 53607358989 BAM harmonized CPTAC3 7f5f833c-d120-4318-97b6-8988f74e29e3 4ba755af92e1000478c0ee471c45888f {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal"} -C3N-00211.WXS.T C3N-00211 LSCC WXS tumor CPT0090440009 CPT0090440009.WholeExome.RP-1303.bam 38073808710 BAM aligned CPTAC3 e23a0176-239f-4d2d-9daf-2a54a46b21c3 f0016248a78001fe8af8543250f24efa {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor"} -C3N-00211.WXS.T.hg38 C3N-00211 LSCC WXS tumor CPT0090440009 7ac573c7-ed1b-4085-a310-805e1aff4b20_wxs_gdc_realn.bam 51587274152 BAM harmonized CPTAC3 5475774a-cfde-4aa3-8cd1-85fda9e6260f bdd0bf8c3a979f119c6e555130ee3135 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor"} -C3N-00217.DUP_f8438300.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM aligned CPTAC3 b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -C3N-00217.DUP_f8438300.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM harmonized CPTAC3 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -C3N-00217.MethArray.Green.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 73731e5f-72f0-4b4c-b2b3-a799ffe23fdb c6620ec6eefba1771976d282b5190b0e {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.MethArray.Green.T C3N-00217 LUAD Methylation_Array tumor CPT0090570010 202234360025_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79a982ef-e333-401b-8314-c23d667f1a40 36b5453c0b6395390b2bfa4205a5213b {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor"} -C3N-00217.MethArray.Red.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cf25d240-6ed7-44cc-afa5-d802b41507ac 6c30c58c65c3c519eb1ce6743337e030 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.MethArray.Red.T C3N-00217 LUAD Methylation_Array tumor CPT0090570010 202234360025_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 bb22bf0b-8e9b-498f-a2e5-82a5d798c79c f88feb02f262aeab6e4786aa9d62a4ab {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor"} -C3N-00217.miRNA-Seq.A.hg38 C3N-00217 LUAD miRNA-Seq tissue_normal CPT0090600006 46d13078-2da3-4f6f-abd2-400ff147a2be_mirnaseq_gdc_realn.bam 234491117 BAM harmonized CPTAC3 9c148c16-b6c3-4164-b32b-fbdc60fb3b3c 0b43302d067b5df8dbb94dcc426cc927 {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.miRNA-Seq.S1_L007_R1.T C3N-00217 LUAD miRNA-Seq tumor CPT0090570007 180724_UNC32-K00270_0106_BHWK3MBBXX_ACTGAT_S1_L007_R1_001.unaln.bam 252257079 BAM S1_L007_R1 unaligned CPTAC3 1df9a109-b385-43d0-b6de-516e5a9ab429 da1cb5445aa689cc21c1feabd4a80da2 {"aliquot_tag": "ALQ_7b019ce6", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00217.miRNA-Seq.S6_L005_R1.A C3N-00217 LUAD miRNA-Seq tissue_normal CPT0090600006 181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L005_R1_001.unaln.bam 211425412 BAM S6_L005_R1 unaligned CPTAC3 480bc31f-54d5-4917-abf4-4cb7e4b517ca e63093e9c1f1fc88809af574c582d64a {"aliquot_tag": "ALQ_38b202ce", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.miRNA-Seq.T.hg38 C3N-00217 LUAD miRNA-Seq tumor CPT0090570007 9793679d-999d-4561-bc25-beed6e53e40c_mirnaseq_gdc_realn.bam 275844663 BAM harmonized CPTAC3 89bc076d-da15-417b-9e5d-ff18560d1fd9 51a06e8de71d56bc075d62816a254852 {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor"} -C3N-00217.RNA-Seq.chimeric.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.chimeric.gdc_realn.bam 243867610 BAM chimeric harmonized CPTAC3 c38aa306-6658-4f94-8aef-5f26104a7f53 13a2de0c92dcd9a006254fcd02a89a45 {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.RNA-Seq.chimeric.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.chimeric.gdc_realn.bam 111857221 BAM chimeric harmonized CPTAC3 cc8d6bbe-fa59-4799-9e20-f7aef45f83bc 4b59f28910886c7c94270a6b59d7473d {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor"} -C3N-00217.RNA-Seq.genomic.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.genomic.gdc_realn.bam 8976709601 BAM genomic harmonized CPTAC3 2c96d195-8899-456c-b075-d120163f1f7d 3f889f95948d398d2f28e638adf3fff8 {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.RNA-Seq.genomic.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.genomic.gdc_realn.bam 10003931541 BAM genomic harmonized CPTAC3 abf62714-99e5-43ba-95cf-2d36ad002406 ab9d46f7e7bc41be32c2681482d30316 {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor"} -C3N-00217.RNA-Seq.S15_L004_R1.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R1_001.fastq.gz 4318279450 FASTQ S15_L004_R1 unaligned CPTAC3 9a546dfe-983b-47a5-ad79-9d3afa19bed3 2f727b6e7347ed44ba5dc392072797d4 {"aliquot_tag": "ALQ_38b202ce", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.RNA-Seq.S15_L004_R2.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R2_001.fastq.gz 4749207885 FASTQ S15_L004_R2 unaligned CPTAC3 140a1e6f-0963-4fc7-a207-b117dffcf933 68019584fc7d435b6c297730da58faaa {"aliquot_tag": "ALQ_38b202ce", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.RNA-Seq.S5_L007_R1.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R1_001.fastq.gz 4555561516 FASTQ S5_L007_R1 unaligned CPTAC3 e5407d3d-fda5-420e-8233-10820ba34973 a930133ef306f9512411c0627bb67fe3 {"aliquot_tag": "ALQ_7b019ce6", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00217.RNA-Seq.S5_L007_R2.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R2_001.fastq.gz 4514469542 FASTQ S5_L007_R2 unaligned CPTAC3 eb613c5b-712d-47f8-9b32-7391e77b8c8e 0ce18b237a957b79f94a99c93654a504 {"aliquot_tag": "ALQ_7b019ce6", "sample": "S5", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00217.RNA-Seq.transcriptome.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.transcriptome.gdc_realn.bam 9661243344 BAM transcriptome harmonized CPTAC3 09be940c-462f-4a43-8356-7a2ff8cf5fa9 90ae7821928c003f9c3a08e621f4c49f {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.RNA-Seq.transcriptome.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.transcriptome.gdc_realn.bam 10541864499 BAM transcriptome harmonized CPTAC3 6da5a0f2-129e-4584-9a33-4f6660c06816 269ab54b17e52123bf9585a982b8059e {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor"} -C3N-00217.WGS.A C3N-00217 LUAD WGS tissue_normal CPT0090600009 CPT0090600009.WholeGenome.RP-1303.bam 57069814766 BAM aligned CPTAC3 b5a7eb16-f4f3-4c9d-8069-47ef63483a75 e69ffadaedc686535030693f088edc14 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.WGS.A.hg38 C3N-00217 LUAD WGS tissue_normal CPT0090600009 e21dba0d-f7c8-43ca-abe2-d532ac286c53_wgs_gdc_realn.bam 83476535203 BAM harmonized CPTAC3 8a7ee755-ceea-47c5-ae5c-fdd1ee99b963 fa4f74359aa55ab383fd522f7afa8aa0 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.WGS.N C3N-00217 LUAD WGS blood_normal CPT0092500002 CPT0092500002.WholeGenome.RP-1303.bam 57169983784 BAM aligned CPTAC3 0b634eca-faea-4af5-8c8e-7f285876e059 010b6552401c97113c68b22bf3cbf3fa {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal"} -C3N-00217.WGS.N.hg38 C3N-00217 LUAD WGS blood_normal CPT0092500002 df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wgs_gdc_realn.bam 82819130250 BAM harmonized CPTAC3 7c0fa13b-ae71-42df-800a-a9480cc67133 c53a7e2b9034753a377407f251aa13af {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal"} -C3N-00217.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010 CPT0090570010.WholeGenome.RP-1303.bam 77202007467 BAM aligned CPTAC3 c0c2069c-1cd9-4e3b-ae40-4617f7c010dd 2cd3b8753fec2a69f03f85c588e0d6bb {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor"} -C3N-00217.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010 e6268f9c-fd73-4163-8824-eca1dab52d32_wgs_gdc_realn.bam 111488141459 BAM harmonized CPTAC3 c3101c27-4922-4e8e-890a-d8f838e04751 88e105dd4bc8e4e64dfe5d24c7fc1f75 {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor"} -C3N-00217.WXS.A C3N-00217 LUAD WXS tissue_normal CPT0090600009 CPT0090600009.WholeExome.RP-1303.bam 35193499504 BAM aligned CPTAC3 a81d1be0-5e52-42a1-877e-6e3354c41ae0 049a85e9fe159a49f5b954c1d6c6bfb1 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.WXS.A.hg38 C3N-00217 LUAD WXS tissue_normal CPT0090600009 e21dba0d-f7c8-43ca-abe2-d532ac286c53_wxs_gdc_realn.bam 48560284391 BAM harmonized CPTAC3 bb1871eb-69df-4c1e-a654-bd2212f6a763 d76fd0c2027b4f42ed025ef3a60fefc1 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00217.WXS.N C3N-00217 LUAD WXS blood_normal CPT0092500002 CPT0092500002.WholeExome.RP-1303.bam 25344310806 BAM aligned CPTAC3 b6c851ae-dc4e-4364-91ce-87754a3cd60f 23d61aac67f08a677639acdd786f8e2e {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal"} -C3N-00217.WXS.N.hg38 C3N-00217 LUAD WXS blood_normal CPT0092500002 df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wxs_gdc_realn.bam 34804905466 BAM harmonized CPTAC3 e088330e-c0af-4151-83e6-9dff9555d3eb 6a5f15a705d061ad80d01757154af1fe {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal"} -C3N-00217.WXS.T C3N-00217 LUAD WXS tumor CPT0090570010 CPT0090570010.WholeExome.RP-1303.bam 28653607883 BAM aligned CPTAC3 88fea8a7-a18c-4575-80de-cae65810d5d6 ec01f093fb7fa8e5c561dc42f4db1d9e {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor"} -C3N-00217.WXS.T.hg38 C3N-00217 LUAD WXS tumor CPT0090570010 e6268f9c-fd73-4163-8824-eca1dab52d32_wxs_gdc_realn.bam 38671141761 BAM harmonized CPTAC3 7139938c-1a84-43b5-9956-05b7f2894847 4710511e84a5c554bbe49771e48e298a {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor"} -C3N-00221.MethArray.Green.T C3N-00221 LSCC Methylation_Array tumor CPT0111150015 203219640160_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 88317901-3cbb-4b3c-b9e3-2c78c14bd43e c645436cd18072ab593bebd64b99df13 {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor"} -C3N-00221.MethArray.Red.T C3N-00221 LSCC Methylation_Array tumor CPT0111150015 203219640160_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 6440394c-f2a3-4bbc-8d02-ef170610c855 c087dc7ee33b61f40b1b17f908c3ceaa {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor"} -C3N-00221.miRNA-Seq.A.hg38 C3N-00221 LSCC miRNA-Seq tissue_normal CPT0111000007 a38f5f51-7d68-45dc-951f-015b6c604744_mirnaseq_gdc_realn.bam 329365944 BAM harmonized CPTAC3 26f0a7f7-853d-468f-ab21-c29c0d0e8602 cf35f06d46a0d0f566009cc488445086 {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00221.miRNA-Seq.S2_L001_R1.T C3N-00221 LSCC miRNA-Seq tumor CPT0111150007 181219_UNC31-K00269_0173_BHYGJJBBXX_CGATGT_S2_L001_R1_001.unaln.bam 236080532 BAM S2_L001_R1 unaligned CPTAC3 6292ddea-24ba-4053-9938-1f31bfa745d3 39316f9adb7ae59f2fac2e6cce53b7e0 {"aliquot_tag": "ALQ_f8b989d2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00221.miRNA-Seq.S30_L002_R1.A C3N-00221 LSCC miRNA-Seq tissue_normal CPT0111000007 181219_UNC31-K00269_0173_BHYGJJBBXX_CACGAT_S30_L002_R1_001.unaln.bam 293288828 BAM S30_L002_R1 unaligned CPTAC3 6033813a-1c85-4f16-951b-8a4adbe013c6 4b7062a0807bbae0ba63227bd109fa74 {"aliquot_tag": "ALQ_fb05d507", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00221.miRNA-Seq.T.hg38 C3N-00221 LSCC miRNA-Seq tumor CPT0111150007 4cd3dbec-5e78-481d-915a-6d538b8eb5e2_mirnaseq_gdc_realn.bam 270964165 BAM harmonized CPTAC3 012bd74a-be82-4fc0-9170-f8b967476101 a626512eb86c2289be0f656bff1f6b8c {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor"} -C3N-00221.RNA-Seq.chimeric.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.chimeric.gdc_realn.bam 26883999 BAM chimeric harmonized CPTAC3 608ecee4-e391-4b59-8482-97d9c315bd91 19772f9759da203d085f7e7b5e99fe41 {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00221.RNA-Seq.chimeric.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.chimeric.gdc_realn.bam 39075323 BAM chimeric harmonized CPTAC3 ab3878c6-be84-49ce-9589-460f21b1f6a5 1b2f507ef0c1f4b1edbf02fc7a66c7e1 {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor"} -C3N-00221.RNA-Seq.genomic.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.genomic.gdc_realn.bam 8441938245 BAM genomic harmonized CPTAC3 a8cd3578-fe2b-453d-9a50-cf624cc72af7 a1ab4c0ecb68fc4f0fff2c87ca6d8c9b {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00221.RNA-Seq.genomic.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.genomic.gdc_realn.bam 11892176654 BAM genomic harmonized CPTAC3 80b50854-a43e-4b4c-8e04-cdea2867962e 504c42f382c32a56752c0ff98569a380 {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor"} -C3N-00221.RNA-Seq.S13_L004_R1.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3863695326 FASTQ S13_L004_R1 unaligned CPTAC3 d7426049-340e-4148-b92c-fe817878b2bd d0299da69eb3b4835d05ec240cab5b4c {"aliquot_tag": "ALQ_fb05d507", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00221.RNA-Seq.S13_L004_R2.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4084446309 FASTQ S13_L004_R2 unaligned CPTAC3 8758b923-ae9a-4e57-b528-e25449795afe 330c9414cbf88230e40001543ac4997c {"aliquot_tag": "ALQ_fb05d507", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00221.RNA-Seq.S18_L005_R1.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R1_001.fastq.gz 5366348432 FASTQ S18_L005_R1 unaligned CPTAC3 24921c1c-441e-413e-9e56-46774caf94dc 89e2d333ecd1009dc58fd83fb90ec096 {"aliquot_tag": "ALQ_f8b989d2", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00221.RNA-Seq.S18_L005_R2.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R2_001.fastq.gz 5575959558 FASTQ S18_L005_R2 unaligned CPTAC3 34b62585-10bc-48c6-a1c6-807c613a848b 765dc94adb665b235fa6e39fa4b87672 {"aliquot_tag": "ALQ_f8b989d2", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00221.RNA-Seq.transcriptome.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.transcriptome.gdc_realn.bam 9730753317 BAM transcriptome harmonized CPTAC3 486b8f88-d5b2-4224-96fe-ec16e81dfb60 e7af194a1430e880812375a0d6a3c260 {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00221.RNA-Seq.transcriptome.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.transcriptome.gdc_realn.bam 14798215729 BAM transcriptome harmonized CPTAC3 2a753e6b-225f-4b7b-b5d3-8967b405a409 d6c0f65b79687bd8b490133d001cb041 {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor"} -C3N-00221.WGS.N C3N-00221 LSCC WGS blood_normal CPT0111280005 CPT0111280005.WholeGenome.RP-1303.bam 61779866202 BAM aligned CPTAC3 2b3dbae5-cdd9-429d-866e-a01dada219ee 95b90eb8921b0d01081ec5d7bcf6eccc {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00221.WGS.N.hg38 C3N-00221 LSCC WGS blood_normal CPT0111280005 5c67075a-e5ac-4324-80fd-d1d15e0331da_wgs_gdc_realn.bam 89632830119 BAM harmonized CPTAC3 20eadfd0-2177-4684-bd76-6191a4387ec9 650e403e5ca737d2a26c499772ade766 {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00221.WGS.T C3N-00221 LSCC WGS tumor CPT0111150015 CPT0111150015.WholeGenome.RP-1303.bam 61952007020 BAM aligned CPTAC3 ed0937df-a98f-42ef-a57e-fb3a28884386 2435c69544c68681bfe0737aa09e6052 {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor"} -C3N-00221.WGS.T.hg38 C3N-00221 LSCC WGS tumor CPT0111150015 474f12bc-db60-42d9-b11b-400bf4338ada_wgs_gdc_realn.bam 89726320658 BAM harmonized CPTAC3 54836e99-46d5-40d2-b523-f4b782588dd0 a2fcea82c90d8eadc278cd684f4b41eb {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor"} -C3N-00221.WXS.N C3N-00221 LSCC WXS blood_normal CPT0111280005 CPT0111280005.WholeExome.RP-1303.bam 29443926175 BAM aligned CPTAC3 1101a23e-424f-423e-93ae-bb1ca379ea0d 72305e86313c6a23df97da226dae49be {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00221.WXS.N.hg38 C3N-00221 LSCC WXS blood_normal CPT0111280005 5c67075a-e5ac-4324-80fd-d1d15e0331da_wxs_gdc_realn.bam 40929034020 BAM harmonized CPTAC3 7e51f93b-4b7d-4ca4-8219-ed573476b6b8 a27d22359c14df245fc2645fb19d0998 {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00221.WXS.T C3N-00221 LSCC WXS tumor CPT0111150015 CPT0111150015.WholeExome.RP-1303.bam 23269028060 BAM aligned CPTAC3 f6bc4639-70d3-4b65-8550-0e14da308d9c 9b8b534cead2450b5622e6b2de0a64fc {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor"} -C3N-00221.WXS.T.hg38 C3N-00221 LSCC WXS tumor CPT0111150015 474f12bc-db60-42d9-b11b-400bf4338ada_wxs_gdc_realn.bam 31875258454 BAM harmonized CPTAC3 6e7524a2-1023-4343-846d-82da4b2c3e1a 5e88a55983d33ad97314a2b73c615f75 {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor"} -C3N-00223.MethArray.Green.T C3N-00223 LUAD Methylation_Array tumor CPT0111300009 202234370091_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 162a6fe8-fc16-4dd7-b213-2853caa6ed57 860951b11f0593eec323e64e39a228fe {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor"} -C3N-00223.MethArray.Red.T C3N-00223 LUAD Methylation_Array tumor CPT0111300009 202234370091_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d6cd0655-e0ca-45df-964d-c8445feb28c8 6d81b65ed9636e25370ddcfd04fdf810 {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor"} -C3N-00223.miRNA-Seq.A.hg38 C3N-00223 LUAD miRNA-Seq tissue_normal CPT0111480006 c3592d55-763c-4cd0-a13b-7b4f0535c739_mirnaseq_gdc_realn.bam 267609282 BAM harmonized CPTAC3 c7056b65-a287-4cb6-b036-117901f5f843 70486a4490fb071ed0d282da255cef02 {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.miRNA-Seq.S29_L005_R1.A C3N-00223 LUAD miRNA-Seq tissue_normal CPT0111480006 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L005_R1_001.unaln.bam 242369634 BAM S29_L005_R1 unaligned CPTAC3 92a16730-eae0-411c-afd7-4f5dbd42b6b6 2820dabc07c6d8c49f0cbd6da1c03ecc {"aliquot_tag": "ALQ_27e3ec46", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.miRNA-Seq.S44_L007_R1.T C3N-00223 LUAD miRNA-Seq tumor CPT0111300006 181108_UNC31-K00269_0163_BH23TVBBXY_TATAAT_S44_L007_R1_001.unaln.bam 329810699 BAM S44_L007_R1 unaligned CPTAC3 ee46fe43-a60a-4c21-a0df-d08107062982 4fe8364f81c38a86d7c9c709871961fb {"aliquot_tag": "ALQ_a96973f", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00223.miRNA-Seq.T.hg38 C3N-00223 LUAD miRNA-Seq tumor CPT0111300006 b2f9e69e-3d83-4109-baf0-da243af87794_mirnaseq_gdc_realn.bam 359353426 BAM harmonized CPTAC3 21947907-51c2-41cc-ac83-9f94bc6a217c e0651b5b74f79b4b05ccb51536cec36b {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor"} -C3N-00223.RNA-Seq.chimeric.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.chimeric.gdc_realn.bam 128922673 BAM chimeric harmonized CPTAC3 fcdf3c9f-7fdb-456d-9424-550a8840e251 53ba60458e725d3f544a600db1563afa {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.RNA-Seq.chimeric.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.chimeric.gdc_realn.bam 34032739 BAM chimeric harmonized CPTAC3 a952d868-aa52-41b9-ac2d-1f52b4ed34d1 fe56c81926bb4ff0015cfa1559d1ed58 {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor"} -C3N-00223.RNA-Seq.genomic.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.genomic.gdc_realn.bam 8812843488 BAM genomic harmonized CPTAC3 1d4968d5-5213-4e8a-aa08-073b2f2aa53d bfab9fc87dd7e150e59ba27172b27480 {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.RNA-Seq.genomic.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.genomic.gdc_realn.bam 7875255772 BAM genomic harmonized CPTAC3 8b1f50d0-3155-47c2-b412-7d72eece65eb a4c4e35e738a2323dd3ee670c85adf1b {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor"} -C3N-00223.RNA-Seq.S18_L005_R1.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3768036132 FASTQ S18_L005_R1 unaligned CPTAC3 25949a10-491a-44e9-a687-7fbf243a8c4e 564d7afc79df3c773aad95f1ce0dfce1 {"aliquot_tag": "ALQ_a96973f", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00223.RNA-Seq.S18_L005_R2.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4132119545 FASTQ S18_L005_R2 unaligned CPTAC3 3a1999f7-a95a-4af4-934a-b1e6f6e41f65 fc2fc01168797e0b76ba96e887a1674a {"aliquot_tag": "ALQ_a96973f", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00223.RNA-Seq.S1_L007_R1.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R1_001.fastq.gz 4341284490 FASTQ S1_L007_R1 unaligned CPTAC3 69b9dcc6-bffb-4130-b35f-97ab47799f07 8c6dc3849593959f6d4dd36b7265ffb1 {"aliquot_tag": "ALQ_27e3ec46", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.RNA-Seq.S1_L007_R2.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R2_001.fastq.gz 4769840822 FASTQ S1_L007_R2 unaligned CPTAC3 f4ffc662-bc2c-4bfc-8829-d9428de3eec9 c124f2cd567b69e2fb739479b26fba44 {"aliquot_tag": "ALQ_27e3ec46", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.RNA-Seq.transcriptome.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.transcriptome.gdc_realn.bam 10295378135 BAM transcriptome harmonized CPTAC3 34ff5e4f-217b-41c7-8dc8-c4740c9958a9 f011cb2a7cc63bc2c8aab9768d1d8d3e {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.RNA-Seq.transcriptome.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.transcriptome.gdc_realn.bam 10640529966 BAM transcriptome harmonized CPTAC3 008165be-8a6e-4842-8339-3768bdc493e3 c5cf8e65a10efcf40c935782c72ea9f0 {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor"} -C3N-00223.WGS.A C3N-00223 LUAD WGS tissue_normal CPT0111480008 CPT0111480008.WholeGenome.RP-1303.bam 59129725734 BAM aligned CPTAC3 1d3e718d-79fe-407c-ad1c-559e55c0ed8d e28618022be4bde98cd6e80428c3fa29 {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.WGS.A.hg38 C3N-00223 LUAD WGS tissue_normal CPT0111480008 82c5882b-db28-4fef-a849-52a1e67e9422_wgs_gdc_realn.bam 86279209348 BAM harmonized CPTAC3 012bb22b-c53b-45b2-a1d3-43e7f96f2474 73c88088ac8deebb42985eadb4053f7f {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.WGS.N C3N-00223 LUAD WGS blood_normal CPT0111560002 CPT0111560002.WholeGenome.RP-1303.bam 65830152798 BAM aligned CPTAC3 62956235-9f3c-465a-9ec5-0e5e093be3a6 48c5ba0b357d7ec0a6804fcba3deaaaa {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00223.WGS.N.hg38 C3N-00223 LUAD WGS blood_normal CPT0111560002 1bd914de-77b5-40a2-92cd-d59097de853f_wgs_gdc_realn.bam 97741387306 BAM harmonized CPTAC3 eab0894a-13ab-4a8f-8de5-1a503dd3a441 dcd9b07bfbe6f90a4a8974d9ecba2c9d {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00223.WGS.T C3N-00223 LUAD WGS tumor CPT0111300009 CPT0111300009.WholeGenome.RP-1303.bam 61012171758 BAM aligned CPTAC3 b22179f6-24e0-42e7-b798-ff1b86393de5 1ffd9dd95b4b862c0b02684c42afd490 {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor"} -C3N-00223.WGS.T.hg38 C3N-00223 LUAD WGS tumor CPT0111300009 c21b39c5-2ee8-4071-832e-febc767e64aa_wgs_gdc_realn.bam 89060004286 BAM harmonized CPTAC3 f99a50c7-1a1d-4db0-9e9c-4ce5b16e60c4 439be2af9dbaa7161b9483789aad82de {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor"} -C3N-00223.WXS.A C3N-00223 LUAD WXS tissue_normal CPT0111480008 CPT0111480008.WholeExome.RP-1303.bam 36159752972 BAM aligned CPTAC3 f1131f4b-67a9-4c11-84e6-3a4a69e9304b 11dbcf6f5603a9df42460dba6d94bc86 {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.WXS.A.hg38 C3N-00223 LUAD WXS tissue_normal CPT0111480008 82c5882b-db28-4fef-a849-52a1e67e9422_wxs_gdc_realn.bam 49263203762 BAM harmonized CPTAC3 55baae83-957d-424e-b77e-6f90d92e15b6 a670fdf26b2f9bd7877fc402ddfa901c {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00223.WXS.N C3N-00223 LUAD WXS blood_normal CPT0111560002 CPT0111560002.WholeExome.RP-1303.bam 28475014721 BAM aligned CPTAC3 1c41838a-55d7-4b99-9409-6a757503ed94 4f7225da0096cdf90ff1c5cedfb216ad {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00223.WXS.N.hg38 C3N-00223 LUAD WXS blood_normal CPT0111560002 1bd914de-77b5-40a2-92cd-d59097de853f_wxs_gdc_realn.bam 37699758451 BAM harmonized CPTAC3 b571dd7d-8429-4e67-bbdc-e2f6af4e92ac a0a80780fc05a4c7a15009626b0d345d {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00223.WXS.T C3N-00223 LUAD WXS tumor CPT0111300009 CPT0111300009.WholeExome.RP-1303.bam 27945533979 BAM aligned CPTAC3 026925cc-11b6-4e84-a18b-1bc3bdce427c 940dc41a0aed204f8b363a7cfa42b7ef {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor"} -C3N-00223.WXS.T.hg38 C3N-00223 LUAD WXS tumor CPT0111300009 c21b39c5-2ee8-4071-832e-febc767e64aa_wxs_gdc_realn.bam 37777693232 BAM harmonized CPTAC3 f441e9d6-5c2d-4be0-b158-a4cac18a0156 4527b6f29ff030ddfd8678cb4262d5f9 {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor"} -C3N-00229.MethArray.Green.T C3N-00229 LSCC Methylation_Array tumor CPT0265030011 204372030161_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8e37c14c-7a5a-4694-95c8-d6872fca6c67 91d470fd94e6c5bf8dd9cd8fc6fef1c0 {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor"} -C3N-00229.MethArray.Red.T C3N-00229 LSCC Methylation_Array tumor CPT0265030011 204372030161_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 241c90ac-8993-42f8-a3f0-dbd231065218 7392a94f2aa6666fc739022ab433257b {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor"} -C3N-00229.miRNA-Seq.A.hg38 C3N-00229 LSCC miRNA-Seq tissue_normal CPT0265050006 b67e6b05-dfc7-4bc2-b25f-68e7209ce895_mirnaseq_gdc_realn.bam 293326928 BAM harmonized CPTAC3 b028a022-7c8c-4d72-b51f-c12de341cd50 679d0ba4d70878e55f1336cbebd9eb5d {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00229.miRNA-Seq.S7_L006_R1.T C3N-00229 LSCC miRNA-Seq tumor CPT0265030014 200224_UNC31-K00269_0267_AHC722BBXY_CAGATC_S7_L006_R1_001.unaln.bam 228953679 BAM S7_L006_R1 unaligned CPTAC3 80a1bf47-0ae4-42b2-ba81-3ed0c0aeabb5 70abf93e7cb8eccd7f0f3b8e5dbdc00b {"aliquot_tag": "ALQ_fbb0dee3", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00229.miRNA-Seq.S7_L007_R1.A C3N-00229 LSCC miRNA-Seq tissue_normal CPT0265050006 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAGATC_S7_L007_R1_001.unaln.bam 259346668 BAM S7_L007_R1 unaligned CPTAC3 6d2f72d2-4a8f-446d-8b37-678ae3a1d5d1 7fdd61dd67ddd1fc99875f683cac0685 {"aliquot_tag": "ALQ_83e57b2e", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00229.miRNA-Seq.T.hg38 C3N-00229 LSCC miRNA-Seq tumor CPT0265030014 fd36351b-3c82-4790-be02-c5484c91023f_mirnaseq_gdc_realn.bam 253984696 BAM harmonized CPTAC3 0f394c15-6f22-4742-8df8-65bd92fe6109 ffa2d63c4443884e12efe8aa5d12fa32 {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor"} -C3N-00229.RNA-Seq.chimeric.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.chimeric.gdc_realn.bam 45584502 BAM chimeric harmonized CPTAC3 aa6bccdb-9b53-4a57-89b2-61251274b090 694734524f8ca1c3835548d1754a6cbd {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00229.RNA-Seq.chimeric.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.chimeric.gdc_realn.bam 76957484 BAM chimeric harmonized CPTAC3 9abfafbc-37d3-4dd0-8039-bf03a19ed55a ff1a8eaa2240e95c1dad2e76e7f06f2d {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor"} -C3N-00229.RNA-Seq.genomic.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.genomic.gdc_realn.bam 6465757341 BAM genomic harmonized CPTAC3 78b52602-8768-4be9-9139-ef994c249213 b1beb0dd594bb7be9100f606ee031806 {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00229.RNA-Seq.genomic.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.genomic.gdc_realn.bam 7137662010 BAM genomic harmonized CPTAC3 c127a1c0-fb5a-4115-92b0-1f1984e0d54a e14025834df866155cdbd5b08bf54ec9 {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor"} -C3N-00229.RNA-Seq.S23_L006_R1.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R1_001.fastq.gz 3474700033 FASTQ S23_L006_R1 unaligned CPTAC3 91099a98-a5b3-4b2f-8098-d7355358e842 c115ef2c4dee20505df5f3bb54d25b85 {"aliquot_tag": "ALQ_fbb0dee3", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00229.RNA-Seq.S23_L006_R2.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R2_001.fastq.gz 3667028811 FASTQ S23_L006_R2 unaligned CPTAC3 821addd9-374c-45f2-ac22-5e9d70d73183 5b7ff3b9f7d833181f7a0a54bddec434 {"aliquot_tag": "ALQ_fbb0dee3", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00229.RNA-Seq.S5_L002_R1.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3143893620 FASTQ S5_L002_R1 unaligned CPTAC3 8eecdbc0-da13-49cc-a077-e2156c6345b9 2fefe50689b1dc213a21f809a01baec3 {"aliquot_tag": "ALQ_83e57b2e", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00229.RNA-Seq.S5_L002_R2.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 3560014410 FASTQ S5_L002_R2 unaligned CPTAC3 8e84d510-4d25-470e-ac2b-3f852ec50a8b 94a133f50f254943af6e75b7f70dd610 {"aliquot_tag": "ALQ_83e57b2e", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00229.RNA-Seq.transcriptome.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.transcriptome.gdc_realn.bam 7550616478 BAM transcriptome harmonized CPTAC3 160ef33d-39d0-41c4-adea-dc1ba00f68e1 455382728ae335fb7e8bbd746a216eca {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00229.RNA-Seq.transcriptome.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.transcriptome.gdc_realn.bam 9238550533 BAM transcriptome harmonized CPTAC3 7bde526d-5029-4d6a-9658-b5857fff749a 8ca4bd7be493057ca7897b9fe3813b3f {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor"} -C3N-00229.WGS.N C3N-00229 LSCC WGS blood_normal CPT0264000002 CPT0264000002.WholeGenome.RP-2158.bam 21559294645 BAM aligned CPTAC3 df5c6b48-3839-4e83-aaf2-66228c4fade8 610f6ce9d95246865e9fcde02c7f3004 {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00229.WGS.N.hg38 C3N-00229 LSCC WGS blood_normal CPT0264000002 985912ac-ab9b-4695-9325-45f735634db5_wgs_gdc_realn.bam 63957077050 BAM harmonized CPTAC3 a5240ef5-a117-493a-90b1-be4f9d0de625 3617d0c5d742fbfe21e5054a7fd9e75d {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00229.WGS.T C3N-00229 LSCC WGS tumor CPT0265030011 CPT0265030011.WholeGenome.RP-2158.bam 24630818287 BAM aligned CPTAC3 a478952a-3305-4f8c-8ef0-c733eb86cbdf 074ae3a323eb1cc6873297eaf95f3e3c {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor"} -C3N-00229.WGS.T.hg38 C3N-00229 LSCC WGS tumor CPT0265030011 95c72196-e6f7-4709-a625-91fc6212cadd_wgs_gdc_realn.bam 71011595844 BAM harmonized CPTAC3 cd067844-4016-4ae5-adeb-2e2d3f1a0f06 e2f788379ec190bf5fad1fd32420db5c {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor"} -C3N-00229.WXS.N C3N-00229 LSCC WXS blood_normal CPT0264000002 CPT0264000002.WholeExome.RP-1303.bam 24319809375 BAM aligned CPTAC3 b2836abb-affe-4172-8385-db77f010da82 3367f1d4d8f8052b60a9c3157527c2c9 {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00229.WXS.N.hg38 C3N-00229 LSCC WXS blood_normal CPT0264000002 985912ac-ab9b-4695-9325-45f735634db5_wxs_gdc_realn.bam 33278656245 BAM harmonized CPTAC3 70335b9f-f3f5-41ef-87e5-d852ed60f50a 649e2b99abdc4e874c95a06864ab4317 {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00229.WXS.T C3N-00229 LSCC WXS tumor CPT0265030011 CPT0265030011.WholeExome.RP-1303.bam 37540971525 BAM aligned CPTAC3 ae5d5cdb-046c-43b2-bae9-8aa3dafecb4d f233c2f8eb748a031d29a1202ef090e4 {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor"} -C3N-00229.WXS.T.hg38 C3N-00229 LSCC WXS tumor CPT0265030011 95c72196-e6f7-4709-a625-91fc6212cadd_wxs_gdc_realn.bam 52393911323 BAM harmonized CPTAC3 ab6662b5-9a7a-4071-af36-1090634cb45d 91ea40c878b2577870215bf0e29933a6 {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor"} -C3N-00242.ADD_6a488767.miRNA-Seq.S40_L004_R1.T C3N-00242 CCRCC miRNA-Seq tumor CPT0014450010 181113_UNC31-K00269_0164_AH23NNBBXY_CCGTCC_S40_L004_R1_001.unaln.bam 296093900 BAM S40_L004_R1 unaligned CPTAC3 047721f8-2d41-4cea-9513-70aa29ce4dae e847b0f98c9dec6d657a7a947fc1cb64 {"aliquot_tag": "ADD_6a488767", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00242.ADD_6a488767.miRNA-Seq.T.hg38 C3N-00242 CCRCC miRNA-Seq tumor CPT0014450010 2ce08b9c-36dd-4c3e-ad85-70fd9936bb3e_mirnaseq_gdc_realn.bam 323991248 BAM harmonized CPTAC3 85340479-8cdd-4717-92dc-f0ac99912d06 69c3f5c0ca2edb437a7fabca5bbe3935 {"aliquot_tag": "ADD_6a488767", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3N-00242.MethArray.Green.A C3N-00242 CCRCC Methylation_Array tissue_normal CPT0014470009 203027390029_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 adab0f0b-636e-49a2-a76b-f6def73b9128 eae284e193f0103860ca920ebedf9ade {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.MethArray.Green.T C3N-00242 CCRCC Methylation_Array tumor CPT0014450007 202163550115_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b1f06d0f-f646-4ec9-89c0-02b8685a83e1 d2fea7fe8ecf9bd42ae3bb782a2ff615 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor"} -C3N-00242.MethArray.Red.A C3N-00242 CCRCC Methylation_Array tissue_normal CPT0014470009 203027390029_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 673df5c2-c27c-4381-947f-7a657461d5da ea17fcc10dc2afc9a3fc836440fa05fc {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.MethArray.Red.T C3N-00242 CCRCC Methylation_Array tumor CPT0014450007 202163550115_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 e973b5e7-d9b4-4b98-9511-ceaa758e6506 1ba6b2f1908070c9b702f0d234cc8385 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor"} -C3N-00242.miRNA-Seq.A.hg38 C3N-00242 CCRCC miRNA-Seq tissue_normal CPT0014470006 79c4bebf-0333-45a4-af42-6b21aa4e0863_mirnaseq_gdc_realn.bam 191210722 BAM harmonized CPTAC3 045972c8-dcd1-43c7-b493-cf5134afdade 592282cbb40640674419f3ba60f01c00 {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.miRNA-Seq.S34_L004_R1.A C3N-00242 CCRCC miRNA-Seq tissue_normal CPT0014470006 181108_UNC31-K00269_0163_BH23TVBBXY_CATGGC_S34_L004_R1_001.unaln.bam 174296383 BAM S34_L004_R1 unaligned CPTAC3 c62ff64d-e23c-4e15-adf9-982456140bf3 319068623d770a023c640668b0a0d633 {"aliquot_tag": "ALQ_e0f04073", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.RNA-Seq.chimeric.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.chimeric.gdc_realn.bam 87806640 BAM chimeric harmonized CPTAC3 c3e87d69-6adb-4e63-b600-d62bcbcce964 12bfba5d3ad611bc8f87661329a19c67 {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.RNA-Seq.chimeric.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.chimeric.gdc_realn.bam 87206536 BAM chimeric harmonized CPTAC3 511da4b0-ae5c-4a4c-a286-08e40790596c 9a5976a01ad222c954aadc662b0ddad2 {"aliquot_tag": "ALQ_6d25437e", "gdc_sample_type": "Primary Tumor"} -C3N-00242.RNA-Seq.genomic.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.genomic.gdc_realn.bam 8774579812 BAM genomic harmonized CPTAC3 fc5f9fe1-074c-41e0-81d6-c9612fa4ab9f b426d9cb41e1e1b8e3351ece1eff9fe9 {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.RNA-Seq.genomic.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.genomic.gdc_realn.bam 8066868087 BAM genomic harmonized CPTAC3 7c35a2db-4e60-4c1d-9140-bdc9f4c3d7ce a1360de2daf2234078b3f975f11af270 {"aliquot_tag": "ALQ_6d25437e", "gdc_sample_type": "Primary Tumor"} -C3N-00242.RNA-Seq.S53_L006_R1.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R1_001.fastq.gz 4228846850 FASTQ S53_L006_R1 unaligned CPTAC3 f8182e74-736d-47e4-b14d-983de722206c 74a81860313faf1f7f059136d22f6b7f {"aliquot_tag": "ALQ_e0f04073", "sample": "S53", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.RNA-Seq.S53_L006_R2.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R2_001.fastq.gz 4511464994 FASTQ S53_L006_R2 unaligned CPTAC3 2edb4bbc-a66c-4384-b108-04369d71eb3b bf256bb9664d70b7a1861fe8e7408556 {"aliquot_tag": "ALQ_e0f04073", "sample": "S53", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.RNA-Seq.S9_L003_R1.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4039192946 FASTQ S9_L003_R1 unaligned CPTAC3 c4e63c50-ca0a-4d7b-b997-b2d8b773c1cf 2a94684296778b6ca06260418016e7f4 {"aliquot_tag": "ALQ_6d25437e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00242.RNA-Seq.S9_L003_R2.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4290781502 FASTQ S9_L003_R2 unaligned CPTAC3 e6af5a8d-aabc-4d70-8c3d-2af0f96340d6 f131fb9afca7f6253f1a5310f4737613 {"aliquot_tag": "ALQ_6d25437e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00242.RNA-Seq.transcriptome.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.transcriptome.gdc_realn.bam 10592316854 BAM transcriptome harmonized CPTAC3 0a44d2bc-53a1-459d-ab54-d7e456075145 951bc9df98e91c1513f74539bf9f75ac {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.RNA-Seq.transcriptome.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.transcriptome.gdc_realn.bam 8378730527 BAM transcriptome harmonized CPTAC3 2f9d0f0f-81df-4e18-90f9-af9aae6aa314 353db8ffef9e77cdb29f6941f8d1b47a {"aliquot_tag": "ALQ_6d25437e", "gdc_sample_type": "Primary Tumor"} -C3N-00242.WGS.A C3N-00242 CCRCC WGS tissue_normal CPT0014470009 CPT0014470009.WholeGenome.RP-1303.bam 67297555501 BAM aligned CPTAC3 3fb31b8e-27ff-4ac5-b468-ee42a26bfd72 59775f284fe11a5ae7973bae1b68b1e4 {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.WGS.A.hg38 C3N-00242 CCRCC WGS tissue_normal CPT0014470009 102fd8bb-dc9a-455e-8d18-c30cb516eb40_wgs_gdc_realn.bam 100104053451 BAM harmonized CPTAC3 0f0c1da6-6049-4940-aa0c-ccb8d0814a18 cafaa61c4470d2fecf24aca811b32b28 {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.WGS.N C3N-00242 CCRCC WGS blood_normal CPT0015070002 CPT0015070002.WholeGenome.RP-1303.bam 68365568096 BAM aligned CPTAC3 384baaa8-9a44-4d08-b6ef-682b60126697 c0ef3a20c71c9b949aa7f0a5f05e5b8c {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00242.WGS.N.hg38 C3N-00242 CCRCC WGS blood_normal CPT0015070002 de313b5e-16b5-4b77-976e-d9b2b4887841_gdc_realn.bam 99680407397 BAM harmonized CPTAC3 a5524921-f50e-45d5-abb3-fabd80fe8750 7b3143b476c1c73e2e6ab154aca37c6b {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00242.WGS.T C3N-00242 CCRCC WGS tumor CPT0014450007 CPT0014450007.WholeGenome.RP-1303.bam 67990304863 BAM aligned CPTAC3 f56e72c9-8729-450f-80a5-6942785eba20 3a0dc0e84316fed10fd35e77ed7ffa9d {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor"} -C3N-00242.WGS.T.hg38 C3N-00242 CCRCC WGS tumor CPT0014450007 0d1f1c1c-3dcc-4f40-beaf-259e581f054f_gdc_realn.bam 98657569623 BAM harmonized CPTAC3 a42575bd-7765-4ade-a67b-ed630f9d083f 82bcab4eb5b6bcb14ea93f03ba192fd4 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor"} -C3N-00242.WXS.A C3N-00242 CCRCC WXS tissue_normal CPT0014470009 CPT0014470009.WholeExome.RP-1303.bam 31924423409 BAM aligned CPTAC3 d95524a5-01cf-4679-9396-7f4cf7f4570a a330d1f4ee743034964a2fb3566f018b {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.WXS.A.hg38 C3N-00242 CCRCC WXS tissue_normal CPT0014470009 102fd8bb-dc9a-455e-8d18-c30cb516eb40_wxs_gdc_realn.bam 43171608515 BAM harmonized CPTAC3 0d35b682-2119-4255-9206-0cd28c697ae5 b8b5c4d02ef1b0f7b9b315ac52ba2598 {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00242.WXS.N C3N-00242 CCRCC WXS blood_normal CPT0015070002 CPT0015070002.WholeExome.RP-1303.bam 24359257270 BAM aligned CPTAC3 b13bd46d-9dcb-42de-9c10-022ddbe516d2 e23452a94b799b81ee2922977b9b96a3 {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00242.WXS.N.hg38 C3N-00242 CCRCC WXS blood_normal CPT0015070002 de313b5e-16b5-4b77-976e-d9b2b4887841_gdc_realn.bam 33330691662 BAM harmonized CPTAC3 66cfb46b-a100-4325-ab44-1114af0652d7 cb283f28887ee25f85e02edd9fb48910 {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00242.WXS.T C3N-00242 CCRCC WXS tumor CPT0014450007 CPT0014450007.WholeExome.RP-1303.bam 23904245033 BAM aligned CPTAC3 c00ec472-327d-4391-abf1-16d39a34b8b4 dce06b9405528af5b558ecbcd4df025b {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor"} -C3N-00242.WXS.T.hg38 C3N-00242 CCRCC WXS tumor CPT0014450007 0d1f1c1c-3dcc-4f40-beaf-259e581f054f_gdc_realn.bam 32755340355 BAM harmonized CPTAC3 f0bb4cae-e08e-4d23-b370-ecbb219d1dfc 1c3cc50ec9a2c189931fa2d8a6300a50 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor"} -C3N-00243.MethArray.Green.A C3N-00243 CCRCC Methylation_Array tissue_normal CPT0025470006 205555380179_R05C01_Grn.idat 13677960 IDAT Green NA CPTAC3 45e897db-a0ff-4afa-b690-e7daa6e2f28c 87ce9db52021382ced2a1223d41126ea {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.MethArray.Green.T C3N-00243 CCRCC Methylation_Array tumor CPT0025450009 205549610123_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 cf1bb41c-7ca1-41be-82b8-26ef2e98e3b1 ea53a0116c0c81c30613b932dd383a1e {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor"} -C3N-00243.MethArray.Red.A C3N-00243 CCRCC Methylation_Array tissue_normal CPT0025470006 205555380179_R05C01_Red.idat 13677960 IDAT Red NA CPTAC3 1eb0cc04-7498-49e8-ab32-989c524721dd 8fa17f879e03cb32251e419740de60f3 {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.MethArray.Red.T C3N-00243 CCRCC Methylation_Array tumor CPT0025450009 205549610123_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 82f547f1-a989-49fc-ae6e-1180d600a38f b8b7e2fa38443bbbc0a0b2775691007f {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor"} -C3N-00243.miRNA-Seq.A.hg38 C3N-00243 CCRCC miRNA-Seq tissue_normal CPT0025470009 8ff198f4-2288-4a1e-81c9-2ffc92fdeb49_mirnaseq_gdc_realn.bam 293557477 BAM harmonized CPTAC3 798417f5-b4b5-4a12-9013-71a29a709208 0130106b04a5f38d5a29cda8b0470681 {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.miRNA-Seq.S36_L003_R1.T C3N-00243 CCRCC miRNA-Seq tumor CPT0025450011 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCCCGA_S36_L003_R1_001.unaln.bam 244420160 BAM S36_L003_R1 unaligned CPTAC3 dc77754a-ef6b-46f9-ba1d-12855d3565b4 17105b2a9a43db37e80e87dbefe24cc3 {"aliquot_tag": "ALQ_35b7bba6", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00243.miRNA-Seq.S38_L002_R1.A C3N-00243 CCRCC miRNA-Seq tissue_normal CPT0025470009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGGCA_S38_L002_R1_001.unaln.bam 272253379 BAM S38_L002_R1 unaligned CPTAC3 e9a50664-2c3e-4d05-b424-c097ec203544 4a716be7df36d25ec39349d037cdd7af {"aliquot_tag": "ALQ_58b751b5", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.miRNA-Seq.T.hg38 C3N-00243 CCRCC miRNA-Seq tumor CPT0025450011 d28374fb-757b-4d35-9c6d-56994655fe87_mirnaseq_gdc_realn.bam 257647490 BAM harmonized CPTAC3 de112439-7a1b-4d33-aa31-21700e86bc56 481695f9ee91400f11b0a73ba56cbcf6 {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor"} -C3N-00243.RNA-Seq.chimeric.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.chimeric.gdc_realn.bam 195854409 BAM chimeric harmonized CPTAC3 ee3c91e6-b013-417a-bd3a-bde7ee9764a3 13ca687f9c548132639bd14e7c2867c7 {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.RNA-Seq.chimeric.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.chimeric.gdc_realn.bam 291023075 BAM chimeric harmonized CPTAC3 ecbe35ee-d651-41ce-a8bb-db1f625e75b2 059b62158b9f57744180323aaaac818d {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor"} -C3N-00243.RNA-Seq.genomic.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.genomic.gdc_realn.bam 8824786855 BAM genomic harmonized CPTAC3 95b7c4d3-4716-4d42-9b48-7747bb5382da 5df9cac416ed711701b930ffd4fecd62 {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.RNA-Seq.genomic.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.genomic.gdc_realn.bam 10016903043 BAM genomic harmonized CPTAC3 fb12f71d-6e87-4938-8500-18f7c2210aa4 95d3c25133eb295238773da1ec240438 {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor"} -C3N-00243.RNA-Seq.S13_L004_R1.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R1_001.fastq.gz 4807995996 FASTQ S13_L004_R1 unaligned CPTAC3 7ce66ed4-6d18-4200-93fe-dff02c0346be 74c6dcb5cd8b4953e097aef2b42e13c8 {"aliquot_tag": "ALQ_35b7bba6", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00243.RNA-Seq.S13_L004_R2.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R2_001.fastq.gz 5420245351 FASTQ S13_L004_R2 unaligned CPTAC3 fa6b449a-3faf-41c2-84e4-787f4d198935 8d8f2507da020b97af89472d41496212 {"aliquot_tag": "ALQ_35b7bba6", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00243.RNA-Seq.S18_L006_R1.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R1_001.fastq.gz 4067950812 FASTQ S18_L006_R1 unaligned CPTAC3 f0085fcc-00ef-4eec-a502-59604bb40dbd 6f992f0d3dac5be4d62f06ec239bf98a {"aliquot_tag": "ALQ_58b751b5", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.RNA-Seq.S18_L006_R2.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R2_001.fastq.gz 4661631472 FASTQ S18_L006_R2 unaligned CPTAC3 d3f055d2-0497-4669-8214-a0064deab02b 918da60c98a2e17f8af0f396c57f5221 {"aliquot_tag": "ALQ_58b751b5", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.RNA-Seq.transcriptome.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.transcriptome.gdc_realn.bam 12511450432 BAM transcriptome harmonized CPTAC3 31e443e2-a424-4fe5-8c63-ad85a72457cd 7dfcc7f7be342b9a9a5e87140869d36f {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.RNA-Seq.transcriptome.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.transcriptome.gdc_realn.bam 11198685277 BAM transcriptome harmonized CPTAC3 5f2e67c9-ca67-4d49-87a9-53b419697a47 aca724cfdc43293c3614c92954a49b03 {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor"} -C3N-00243.WGS.N C3N-00243 CCRCC WGS blood_normal CPT0028430002 CPT0028430002.WholeGenome.RP-2158.bam 21127475254 BAM aligned CPTAC3 1015a225-c765-42dc-9e16-3652d6ce1393 ae024e1d4a699f4aeba3ae8b8ca2f3d4 {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00243.WGS.N.hg38 C3N-00243 CCRCC WGS blood_normal CPT0028430002 8af781f0-72e5-454a-afd7-466bec03c5f6_wgs_gdc_realn.bam 61282039234 BAM harmonized CPTAC3 949f29bb-92e9-48d6-93e0-3bcf6aad01d5 9d94b20d1940500bee2de09e3120e425 {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00243.WGS.T C3N-00243 CCRCC WGS tumor CPT0025450009 CPT0025450009.WholeGenome.RP-2158.bam 38694686455 BAM aligned CPTAC3 6d53f3b8-0635-42e7-b9ae-af71e22c5be8 452d7fdb6d64bcd57c54c9790cf9ed25 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor"} -C3N-00243.WGS.T.hg38 C3N-00243 CCRCC WGS tumor CPT0025450009 5eaf0c1f-f5af-4b20-9a9f-683557da5637_wgs_gdc_realn.bam 115108104904 BAM harmonized CPTAC3 37e56cba-4000-4966-adbf-e5bad6b4f744 ff128cbb9ae899e3b8c1ad6c4df53b35 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor"} -C3N-00243.WXS.A C3N-00243 CCRCC WXS tissue_normal CPT0025470006 CPT0025470006.WholeExome.RP-1303.bam 22744188372 BAM aligned CPTAC3 1911670a-03c7-4e35-89fd-fde5c53f903a 2aedf99d1bb471a39fba19c1ce9f7de2 {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.WXS.A.hg38 C3N-00243 CCRCC WXS tissue_normal CPT0025470006 e6ab0934-5cd2-4712-82c5-e41b42791290_wxs_gdc_realn.bam 30896743669 BAM harmonized CPTAC3 d31d2ac4-e74b-4787-addd-8c2f87ab43df 74929cfc315f95ad3ea3dd698ec8cab4 {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00243.WXS.N C3N-00243 CCRCC WXS blood_normal CPT0028430002 CPT0028430002.WholeExome.RP-1303.bam 26737805445 BAM aligned CPTAC3 3619408e-fbd6-4b28-bf60-4813e5dc7bc5 7206b2e40c656e4ba2175890ec825c18 {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00243.WXS.N.hg38 C3N-00243 CCRCC WXS blood_normal CPT0028430002 8af781f0-72e5-454a-afd7-466bec03c5f6_wxs_gdc_realn.bam 36685146038 BAM harmonized CPTAC3 24bf316e-db34-46de-9c49-5bb4c158d28c 18292db8b2c6d1a503f3c87b025f7f4f {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00243.WXS.T C3N-00243 CCRCC WXS tumor CPT0025450009 CPT0025450009.WholeExome.RP-1303.bam 27963680990 BAM aligned CPTAC3 3d249169-10e9-4c39-a2e0-1ccdcbf818c3 1f43d80eea307c228dc0afc0ff924cc2 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor"} -C3N-00243.WXS.T.hg38 C3N-00243 CCRCC WXS tumor CPT0025450009 5eaf0c1f-f5af-4b20-9a9f-683557da5637_wxs_gdc_realn.bam 38825972232 BAM harmonized CPTAC3 14abb094-d424-4ed3-83ea-dcf17e9a9d26 8c8ab8991a640f7ef43211babacf4586 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor"} -C3N-00244.MethArray.Green.A C3N-00244 CCRCC Methylation_Array tissue_normal CPT0014350009 204930640051_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4c49a678-9919-4da3-9610-36e84ab217f4 ab8da2ca35e460458483ca97d7298a5c {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.MethArray.Green.T C3N-00244 CCRCC Methylation_Array tumor CPT0014370007 202184900127_R01C01_Grn.idat 13676250 IDAT Green NA CPTAC3 acaa6822-0374-4168-adbb-e1c1469be57c 970c07929221e3b59eded06d624978da {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor"} -C3N-00244.MethArray.Red.A C3N-00244 CCRCC Methylation_Array tissue_normal CPT0014350009 204930640051_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 569d9f93-a955-4370-9a09-7d354da6f95b c006fd3d9dec76354e72d01a6121311f {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.MethArray.Red.T C3N-00244 CCRCC Methylation_Array tumor CPT0014370007 202184900127_R01C01_Red.idat 13676250 IDAT Red NA CPTAC3 71336bb5-0864-4e26-a7f0-002a7a0c2042 9cddd1c5dc34cc663e606d2358d04ae0 {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor"} -C3N-00244.miRNA-Seq.A.hg38 C3N-00244 CCRCC miRNA-Seq tissue_normal CPT0014350006 1f1a7087-1990-4713-8fa7-6ad260eae8f1_mirnaseq_gdc_realn.bam 205648181 BAM harmonized CPTAC3 0a9fe2fe-f328-4cf1-b981-c2f08cd77def b0441db43c73fda725995e2b3a4093b2 {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.miRNA-Seq.S33_L004_R1.A C3N-00244 CCRCC miRNA-Seq tissue_normal CPT0014350006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGGCG_S33_L004_R1_001.unaln.bam 186566670 BAM S33_L004_R1 unaligned CPTAC3 b0342817-9666-460f-af47-484b3f92b59f d221d429cb707bbc24b54d06ff486a94 {"aliquot_tag": "ALQ_873523ab", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.miRNA-Seq.S39_L004_R1.T C3N-00244 CCRCC miRNA-Seq tumor CPT0014370010 181113_UNC31-K00269_0164_AH23NNBBXY_ATGTCA_S39_L004_R1_001.unaln.bam 216510545 BAM S39_L004_R1 unaligned CPTAC3 d39a0e69-eba7-437a-8252-69dc001b1d7c 1059214564cebe3ed726993174ba99a3 {"aliquot_tag": "ALQ_d8de4bf", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00244.miRNA-Seq.T.hg38 C3N-00244 CCRCC miRNA-Seq tumor CPT0014370010 cc99b8a5-66f1-4ac4-a902-9a6a17977941_mirnaseq_gdc_realn.bam 236636416 BAM harmonized CPTAC3 0f3d7a1b-45e2-436a-ad0c-a7a15230b762 9f4306b6088c31c99b2a4c8e3e2307dc {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor"} -C3N-00244.RNA-Seq.chimeric.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.chimeric.gdc_realn.bam 81436318 BAM chimeric harmonized CPTAC3 1ca50c2c-03f2-40eb-8dc5-26bd0c8131e1 3f805c0af4101327042950ce1cef2c33 {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.RNA-Seq.chimeric.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.chimeric.gdc_realn.bam 82959984 BAM chimeric harmonized CPTAC3 864aa86e-7a46-45db-ab36-82995dd93a13 d01e4afdd9aa101e0c0e7570413174e7 {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor"} -C3N-00244.RNA-Seq.genomic.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.genomic.gdc_realn.bam 9525860464 BAM genomic harmonized CPTAC3 2440691d-113a-4192-bfe4-b1545a9b80de 94dcea3a077d3acc0e3f0e5a48297688 {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.RNA-Seq.genomic.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.genomic.gdc_realn.bam 6797456944 BAM genomic harmonized CPTAC3 11d6b30f-d870-4f3c-b04d-a84c3717b2ef 7db5fcbe39e973543fc4ad0957777798 {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor"} -C3N-00244.RNA-Seq.S20_L007_R1.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R1_001.fastq.gz 3506612417 FASTQ S20_L007_R1 unaligned CPTAC3 9eac52d5-7b2c-4f12-8710-c3698b38b316 d60c1d076d5d8eacf8d65256bf5e204d {"aliquot_tag": "ALQ_d8de4bf", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00244.RNA-Seq.S20_L007_R2.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R2_001.fastq.gz 3780716196 FASTQ S20_L007_R2 unaligned CPTAC3 5d53b49e-4a14-46ee-96eb-bd0c21284c72 aa08fa8f3ade1c3e9085d85ca6616ca6 {"aliquot_tag": "ALQ_d8de4bf", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00244.RNA-Seq.S52_L006_R1.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R1_001.fastq.gz 4473154983 FASTQ S52_L006_R1 unaligned CPTAC3 ac55d6b5-d21e-4f30-bb31-a2c1b1fe3b85 7cb7cc4c1b5e61cac82ef4bd389ea51a {"aliquot_tag": "ALQ_873523ab", "sample": "S52", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.RNA-Seq.S52_L006_R2.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R2_001.fastq.gz 4767352929 FASTQ S52_L006_R2 unaligned CPTAC3 9405a470-4eaf-4991-b093-f7f8761a5d5f 329850d14a522032d47f95cab49071d3 {"aliquot_tag": "ALQ_873523ab", "sample": "S52", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.RNA-Seq.transcriptome.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.transcriptome.gdc_realn.bam 10887603401 BAM transcriptome harmonized CPTAC3 ae4a8f1f-401e-41fd-a6ab-6290b9d589cb dd8ee8aa14f721a35ac1d25bf28922fb {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.RNA-Seq.transcriptome.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.transcriptome.gdc_realn.bam 10222792345 BAM transcriptome harmonized CPTAC3 e48ff784-c4b9-4252-9393-933b1a3443a4 1c304cc4d05b3d7c2736541d056eb4a9 {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor"} -C3N-00244.WGS.A C3N-00244 CCRCC WGS tissue_normal CPT0014350009 CPT0014350009.WholeGenome.RP-1303.bam 69390189134 BAM aligned CPTAC3 678065a8-d1b5-4efe-b1cd-6ecb2a5fd99b 7e3c8c4a5f9bcdeac160faaa19d6737e {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.WGS.A.hg38 C3N-00244 CCRCC WGS tissue_normal CPT0014350009 f1bd88b9-899a-4812-b52f-7a3ff82e781e_wgs_gdc_realn.bam 101451681101 BAM harmonized CPTAC3 aa562348-0ded-4d2d-8690-d9163db1a6dc 08b003dfaa6340218acb19f35c41b3dc {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.WGS.N C3N-00244 CCRCC WGS blood_normal CPT0015060002 CPT0015060002.WholeGenome.RP-1303.bam 55519574884 BAM aligned CPTAC3 7ce686a2-7c03-40d0-bcf1-c0d714d0181b 0f9209d6102b85689ae56b49d812a4ba {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal"} -C3N-00244.WGS.N.hg38 C3N-00244 CCRCC WGS blood_normal CPT0015060002 46e9d690-9bb2-4e23-8dcc-b7475943743c_gdc_realn.bam 80741189355 BAM harmonized CPTAC3 106202b4-0be9-4da8-a330-5d0cc4c66027 b786f0baff670736b77d3dccb9a203a5 {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal"} -C3N-00244.WGS.T C3N-00244 CCRCC WGS tumor CPT0014370007 CPT0014370007.WholeGenome.RP-1303.bam 72981691793 BAM aligned CPTAC3 0b988836-7c8d-44fb-97b8-40fca620aab5 d09888da90779237bcbded482a7dbe48 {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor"} -C3N-00244.WGS.T.hg38 C3N-00244 CCRCC WGS tumor CPT0014370007 0e504ad9-bd5a-4c37-8996-66032855966d_gdc_realn.bam 108997975791 BAM harmonized CPTAC3 63367d7f-c123-41de-82d0-449663286b8a f6dbcfc96e25011834e4d7bb2d9cee5d {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor"} -C3N-00244.WXS.A C3N-00244 CCRCC WXS tissue_normal CPT0014350009 CPT0014350009.WholeExome.RP-1303.bam 46991375452 BAM aligned CPTAC3 4205bfed-8cd5-4b26-bc4d-691045321e31 6ee203c7b984a5755a52a0c41f574328 {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.WXS.A.hg38 C3N-00244 CCRCC WXS tissue_normal CPT0014350009 f1bd88b9-899a-4812-b52f-7a3ff82e781e_wxs_gdc_realn.bam 63859637376 BAM harmonized CPTAC3 7e4aac4e-5147-413f-865f-57a9e11e0703 0240252b6fbb122a84223cf759311853 {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00244.WXS.N C3N-00244 CCRCC WXS blood_normal CPT0015060002 CPT0015060002.WholeExome.RP-1303.bam 24338139237 BAM aligned CPTAC3 8580540d-743c-45b6-a315-f3cf13988361 b3cf9c821974d55b637c6464820a7ac2 {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal"} -C3N-00244.WXS.N.hg38 C3N-00244 CCRCC WXS blood_normal CPT0015060002 46e9d690-9bb2-4e23-8dcc-b7475943743c_gdc_realn.bam 33023503528 BAM harmonized CPTAC3 305ac725-4d71-4b6b-87a9-1033ac5ae664 1156ab474643d136c649a648853f6f48 {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal"} -C3N-00244.WXS.T C3N-00244 CCRCC WXS tumor CPT0014370007 CPT0014370007.WholeExome.RP-1303.bam 26590798868 BAM aligned CPTAC3 ed2a9f39-52ee-4dd6-ae62-097405443b5a ad58f10f408d3bf8c0b1cb30359ec68c {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor"} -C3N-00244.WXS.T.hg38 C3N-00244 CCRCC WXS tumor CPT0014370007 0e504ad9-bd5a-4c37-8996-66032855966d_gdc_realn.bam 36427791748 BAM harmonized CPTAC3 734e4595-5abd-4739-8fbe-0b877b1b62c3 963227a446e6e2957f8cee841592aaf5 {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor"} -C3N-00246.MethArray.Green.T C3N-00246 CCRCC Methylation_Array tumor CPT0025580010 202184990059_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9f3a6c62-ded6-4c99-969e-169d7ab388c8 a3cced98a55b84392d23832c392d2b0b {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor"} -C3N-00246.MethArray.Red.T C3N-00246 CCRCC Methylation_Array tumor CPT0025580010 202184990059_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 7038dc6b-7fbe-4fc4-8b69-18f16bd18ac0 6414583f0d40a8bfb9f9de04f0d6754d {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor"} -C3N-00246.miRNA-Seq.S14_L001_R1.T C3N-00246 CCRCC miRNA-Seq tumor CPT0025580007 180924_UNC31-K00269_0154_AHWTMLBBXX_GTAGAG_S14_L001_R1_001.unaln.bam 206170912 BAM S14_L001_R1 unaligned CPTAC3 05738917-2681-4178-8f6f-c6260079ffb5 8031eaf9e5264a42822bc24d12388aa9 {"aliquot_tag": "ALQ_f60338c6", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00246.miRNA-Seq.T.hg38 C3N-00246 CCRCC miRNA-Seq tumor CPT0025580007 2f30225a-252c-49a4-bfab-795419b17144_mirnaseq_gdc_realn.bam 226551421 BAM harmonized CPTAC3 1be2e2ba-84b7-46db-a02c-1b7fbd9989a0 a462d01d1128ac85e5be19e83e8a2514 {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor"} -C3N-00246.RNA-Seq.chimeric.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.chimeric.gdc_realn.bam 91790578 BAM chimeric harmonized CPTAC3 7a9d56e1-58af-4770-966c-9e5c2bab5d94 6f23a46010663120372fbc98e1e86a2e {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor"} -C3N-00246.RNA-Seq.genomic.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.genomic.gdc_realn.bam 8330219152 BAM genomic harmonized CPTAC3 f60201dc-bde3-43a2-9648-a49a58637e83 c563d0870cb61e0b875c858b37a20f41 {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor"} -C3N-00246.RNA-Seq.S5_L002_R1.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4176841992 FASTQ S5_L002_R1 unaligned CPTAC3 b2f5270b-e884-473e-bebb-fd293a7abe03 19fee323e47e03ac83da8ab1ba01fa48 {"aliquot_tag": "ALQ_f60338c6", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00246.RNA-Seq.S5_L002_R2.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4639218644 FASTQ S5_L002_R2 unaligned CPTAC3 6c6faf26-b644-4903-8866-4153d141fead cdb7df58e4af7672c105bc74e78c5f1e {"aliquot_tag": "ALQ_f60338c6", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00246.RNA-Seq.transcriptome.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.transcriptome.gdc_realn.bam 11462655998 BAM transcriptome harmonized CPTAC3 30fb10d1-5c0d-471f-989a-be71d286541f 1efe4c25980617ee0f7a9aa556ffdc0a {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor"} -C3N-00246.WGS.N C3N-00246 CCRCC WGS blood_normal CPT0028450002 CPT0028450002.WholeGenome.RP-1303.bam 96839343963 BAM aligned CPTAC3 8a6339e1-e955-4f95-bf80-e4ab6086c165 2dd4508e37664e03ee2678414a843cb4 {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00246.WGS.N.hg38 C3N-00246 CCRCC WGS blood_normal CPT0028450002 ec639b94-a29e-46b7-9b59-cf6dd07504c8_gdc_realn.bam 141378006084 BAM harmonized CPTAC3 5c9b3fd4-a694-4304-a7a6-0e84d4fa373e dac953abd8031b164214f863ce4454d7 {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00246.WGS.T C3N-00246 CCRCC WGS tumor CPT0025580010 CPT0025580010.WholeGenome.RP-1303.bam 69359408190 BAM aligned CPTAC3 815cc304-239b-4f19-89bd-56d5e28a74be 30e5f575a35113e5694c51257c3cd74b {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor"} -C3N-00246.WGS.T.hg38 C3N-00246 CCRCC WGS tumor CPT0025580010 0c549f20-30eb-4517-b94a-116c0f1e6755_gdc_realn.bam 101429143329 BAM harmonized CPTAC3 2169708d-9ece-40d3-a19d-8ad0b1345e10 432a25b549920ca4efb76389a5edba05 {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor"} -C3N-00246.WXS.N C3N-00246 CCRCC WXS blood_normal CPT0028450002 CPT0028450002.WholeExome.RP-1303.bam 23424780952 BAM aligned CPTAC3 804fdc69-da5b-41ba-984b-37f4aee66f7f 5a2eb511f7869bd732b14536706e7bbe {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00246.WXS.N.hg38 C3N-00246 CCRCC WXS blood_normal CPT0028450002 ec639b94-a29e-46b7-9b59-cf6dd07504c8_gdc_realn.bam 32179635876 BAM harmonized CPTAC3 717121ec-6899-4fde-a634-1a6727a9c246 baba24d9a8cca8f34802b418d71dee4b {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00246.WXS.T C3N-00246 CCRCC WXS tumor CPT0025580010 CPT0025580010.WholeExome.RP-1303.bam 32900126616 BAM aligned CPTAC3 c16461f9-c414-471b-abf3-54b4b9d0acfa c9db4ac90d43f3824a99622974b049e3 {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor"} -C3N-00246.WXS.T.hg38 C3N-00246 CCRCC WXS tumor CPT0025580010 0c549f20-30eb-4517-b94a-116c0f1e6755_gdc_realn.bam 44838721504 BAM harmonized CPTAC3 0cca9017-b591-4699-b5a9-91ddc6ed5127 2d6c3a0444522209c8cc2865fb491b6a {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor"} -C3N-00247.MethArray.Green.T C3N-00247 LSCC Methylation_Array tumor CPT0089880009 202234360028_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a8718ff9-c8a2-4c33-89b1-0347864e8494 d2f52b6011b101308081c16acacbf459 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor"} -C3N-00247.MethArray.Red.T C3N-00247 LSCC Methylation_Array tumor CPT0089880009 202234360028_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 2ec62635-d694-4bb4-bd6a-6eb71156d916 33342028512e9842c4896ce9083a2a55 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor"} -C3N-00247.miRNA-Seq.S22_L006_R1.T C3N-00247 LSCC miRNA-Seq tumor CPT0089880006 180828_UNC32-K00270_0112_AHWTLNBBXX_CGATGT_S22_L006_R1_001.unaln.bam 245736563 BAM S22_L006_R1 unaligned CPTAC3 3d2fd5d4-1621-4dbd-9302-0c1141616559 b57ce5e3edbff08049e163be48f6a8ee {"aliquot_tag": "ALQ_6bfa6d32", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00247.miRNA-Seq.T.hg38 C3N-00247 LSCC miRNA-Seq tumor CPT0089880006 22061a48-0c26-47f0-84fa-2b885d820d5e_mirnaseq_gdc_realn.bam 275198600 BAM harmonized CPTAC3 d5e744a5-0b82-478a-adbf-77d9f8f75baa 2be369af4c9a75201b26850caead122d {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor"} -C3N-00247.RNA-Seq.chimeric.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.chimeric.gdc_realn.bam 34464699 BAM chimeric harmonized CPTAC3 3ec97893-eeea-4bb2-afb4-ba66453c1413 62c099ab8ab3a73c31e1e5e75a34955e {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor"} -C3N-00247.RNA-Seq.genomic.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.genomic.gdc_realn.bam 10880454866 BAM genomic harmonized CPTAC3 4655fbfb-30da-4068-b059-a9ee5a3f70b0 d00c72dee855f231668b2758bb3de6c4 {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor"} -C3N-00247.RNA-Seq.S6_L002_R1.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4417867260 FASTQ S6_L002_R1 unaligned CPTAC3 93f35b19-4f58-4809-b52d-8be64c0beb5e 54469884efed6ccd09a529f93cd13595 {"aliquot_tag": "ALQ_6bfa6d32", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00247.RNA-Seq.S6_L002_R2.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4747219538 FASTQ S6_L002_R2 unaligned CPTAC3 33c91fa1-de4a-4bb9-9071-fc89e343ac1b db0d5b35cce72a901bce98370ecfc56f {"aliquot_tag": "ALQ_6bfa6d32", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00247.RNA-Seq.transcriptome.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.transcriptome.gdc_realn.bam 11070320028 BAM transcriptome harmonized CPTAC3 e94d2871-fab7-47d2-9d57-9ef7c4bebea8 ff1c5aca318e89d585ec7aae01b78e31 {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor"} -C3N-00247.WGS.N C3N-00247 LSCC WGS blood_normal CPT0091400002 CPT0091400002.WholeGenome.RP-1303.bam 61758632552 BAM aligned CPTAC3 7c44725b-4fe8-4f7e-91a6-2fcda7105bc9 3052c8cd4a9c6c264333bacb0ffa3d31 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal"} -C3N-00247.WGS.N.hg38 C3N-00247 LSCC WGS blood_normal CPT0091400002 864d0707-63aa-439f-8fcc-cbe77d2235bb_wgs_gdc_realn.bam 89697207318 BAM harmonized CPTAC3 53d1890c-8b29-487f-a73a-5bf0c6ef901d 81a58dca1676b2ceddb3385122b92544 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal"} -C3N-00247.WGS.T C3N-00247 LSCC WGS tumor CPT0089880009 CPT0089880009.WholeGenome.RP-1303.bam 57844872128 BAM aligned CPTAC3 eb72c4e4-e0fd-4aa8-971b-840536d762d3 6198d934edc1b8d814b15986ab1582f9 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor"} -C3N-00247.WGS.T.hg38 C3N-00247 LSCC WGS tumor CPT0089880009 d8775fea-842f-49cd-a59c-e95128566a32_wgs_gdc_realn.bam 84772160370 BAM harmonized CPTAC3 fe418d3f-6a3b-468d-979a-bd4a4a941546 49dce3017be616fd584c4aa83f66e10f {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor"} -C3N-00247.WXS.N C3N-00247 LSCC WXS blood_normal CPT0091400002 CPT0091400002.WholeExome.RP-1303.bam 32659493290 BAM aligned CPTAC3 d8859eaa-d9f9-47a1-a3c7-ee21cba63c07 5a69e92a87391f243d1b0efdc436c025 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal"} -C3N-00247.WXS.N.hg38 C3N-00247 LSCC WXS blood_normal CPT0091400002 864d0707-63aa-439f-8fcc-cbe77d2235bb_wxs_gdc_realn.bam 43988430123 BAM harmonized CPTAC3 c13e3765-ba34-45be-ad45-8761f8668d93 cf610db3505efdcd90d209979f9efe51 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal"} -C3N-00247.WXS.T C3N-00247 LSCC WXS tumor CPT0089880009 CPT0089880009.WholeExome.RP-1303.bam 34798795077 BAM aligned CPTAC3 d08e9bd0-9c41-4f0f-823b-e52caaaa69da 0f5c8a5c50abe4b976e01609a6a311a2 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor"} -C3N-00247.WXS.T.hg38 C3N-00247 LSCC WXS tumor CPT0089880009 d8775fea-842f-49cd-a59c-e95128566a32_wxs_gdc_realn.bam 46450438706 BAM harmonized CPTAC3 65e5941b-b9fc-4c60-bb22-61730bf216fa 20fe6cb51f360f2af429cb4049e3ba04 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor"} -C3N-00249.ADD_a4e3707b.MethArray.Green.T C3N-00249 PDA Methylation_Array tumor CPT0025750009 202176300001_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e95862d8-e689-4f6a-94c8-3ba08946ff88 8f7c3fe279cb689237a81bdc2cb7afae {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00249.ADD_a4e3707b.MethArray.Red.T C3N-00249 PDA Methylation_Array tumor CPT0025750009 202176300001_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 ea453dcc-542b-46f0-a943-d6673ebcd047 0fbaa01e0f4b8ff60dd95474ff3e3e70 {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00249.ADD_a4e3707b.WGS.T C3N-00249 PDA WGS tumor CPT0025750009 CPT0025750009.WholeGenome.RP-1303.bam 64051533577 BAM aligned CPTAC3 4610bba5-9c31-4bd5-88a3-7ffcbf578b8d 9e9b3a42f0052a04d7e34336c0934a4e {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00249.ADD_a4e3707b.WGS.T.hg38 C3N-00249 PDA WGS tumor CPT0025750009 4fc51e70-9dc7-4a0f-af5b-f45bbbaa9292_gdc_realn.bam 94969894851 BAM harmonized CPTAC3 e6177b15-f150-4565-88e8-f26bb0e6e33a e4e17166e04b38fd4fe39d9c984c0a34 {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00249.ADD_a4e3707b.WXS.T C3N-00249 PDA WXS tumor CPT0025750009 CPT0025750009.WholeExome.RP-1303.bam 24358776304 BAM aligned CPTAC3 68ab025a-49f8-402e-927d-bb1bfda16f4c 8b1bfb6d51427e62ef7d8bbfaacfc4ae {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00249.ADD_a4e3707b.WXS.T.hg38 C3N-00249 PDA WXS tumor CPT0025750009 4fc51e70-9dc7-4a0f-af5b-f45bbbaa9292_gdc_realn.bam 33380327861 BAM harmonized CPTAC3 130c5bb4-e44a-497f-89eb-a95af0ccbc71 63c66cdb00f184b481ebf7678ac04274 {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00249.MethArray.Green.A C3N-00249 PDA Methylation_Array tissue_normal CPT0025760006 203561450014_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0decb80a-8d2c-43b8-99b9-c53591984f7a c44a7a4916826031c6147940e62c80b1 {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00249.MethArray.Red.A C3N-00249 PDA Methylation_Array tissue_normal CPT0025760006 203561450014_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 0a627e8e-b19b-4cd6-b8f1-bc6ee7254cdd 03b03c71b945ebc7fdfbfbd1e685af2a {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00249.miRNA-Seq.S13_L001_R1.T C3N-00249 PDA miRNA-Seq tumor CPT0025750006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTCCGC_S13_L001_R1_001.unaln.bam 235376558 BAM S13_L001_R1 unaligned CPTAC3 ef93cf21-8cc6-41ad-a7d6-ecc4466c3c3f c21deef9ae25d8c8e52a4a1663b52e40 {"aliquot_tag": "ALQ_345c6dea", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00249.miRNA-Seq.T.hg38 C3N-00249 PDA miRNA-Seq tumor CPT0025750006 c39fb7e7-f6f6-4d87-a064-e8aedde885cb_mirnaseq_gdc_realn.bam 257255576 BAM harmonized CPTAC3 c97c42bc-a767-4336-8cf3-466491f10cbb 63743813547fc5336334aad07db9d685 {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor"} -C3N-00249.RNA-Seq.chimeric.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.chimeric.gdc_realn.bam 65054376 BAM chimeric harmonized CPTAC3 c64603bb-b025-4b21-add1-88ac4da445dc 236258c815602c16c8ca167c73deab3c {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor"} -C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.genomic.gdc_realn.bam 8811542154 BAM genomic harmonized CPTAC3 3e04bab8-c966-4f0d-9cae-c11969a94c07 6bc7be89b0cdbeeb11daec6f125db32e {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor"} -C3N-00249.RNA-Seq.S6_L002_R1.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3904396163 FASTQ S6_L002_R1 unaligned CPTAC3 610773b7-6a19-49c2-8b12-bb58d27184b3 5085cd9d8e2d1d9cce7cffe1f7336a6e {"aliquot_tag": "ALQ_345c6dea", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00249.RNA-Seq.S6_L002_R2.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4385829043 FASTQ S6_L002_R2 unaligned CPTAC3 5853ca64-9b14-49cb-9c49-18595e36626f 129cc9a23bcf1f55bae991e3a9e85e8e {"aliquot_tag": "ALQ_345c6dea", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00249.RNA-Seq.transcriptome.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.transcriptome.gdc_realn.bam 11054554153 BAM transcriptome harmonized CPTAC3 cbcf2ea6-d930-48e0-bde0-89030af1ad37 b1c94383af6bb02e34892c50747671e8 {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor"} -C3N-00249.Targeted.T C3N-00249 PDA Targeted_Sequencing tumor CPT0025750009_1 CPT0025750009_1.CustomSelection.RP-1303.PDO-18786.bam 4427050184 BAM aligned CPTAC3 a57a8577-1997-4e79-91b1-50836db5dd22 1670883dea0628ef854c38d499517bf2 {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor"} -C3N-00249.Targeted.T.hg38 C3N-00249 PDA Targeted_Sequencing tumor CPT0025750009_1 d54a354f-a303-4689-9f1b-fba719fd79ef_targetedsequencing_gdc_realn.bam 6191598262 BAM harmonized CPTAC3 5b20eb74-ebc1-4234-a739-4a8ddb97a8c5 c6072636f1508fb450c63f9a238dfa78 {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor"} -C3N-00249.WGS.A C3N-00249 PDA WGS tissue_normal CPT0025760006 CPT0025760006.WholeGenome.RP-1303.bam 57991657468 BAM aligned CPTAC3 a40034de-9b4c-4418-a218-d2613df25a5c 47b81a46b38ab0da7a53bedd3fe1da4c {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00249.WGS.A.hg38 C3N-00249 PDA WGS tissue_normal CPT0025760006 06e41ea8-02fb-402b-ad68-51acac08b514_wgs_gdc_realn.bam 84152106557 BAM harmonized CPTAC3 5dc33b42-8c3b-442f-8ad9-9b34ffc488c0 1a78a75dbb634b62a39aa9571cad5719 {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00249.WGS.N C3N-00249 PDA WGS blood_normal CPT0028460002 CPT0028460002.WholeGenome.RP-1303.bam 67483151876 BAM aligned CPTAC3 00b73968-3184-453e-9f8b-0d8c066f9de3 ba4529efbdb8cd141770f57e65ff10bf {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00249.WGS.N.hg38 C3N-00249 PDA WGS blood_normal CPT0028460002 665f6e49-5c68-43f5-9fe9-67ab623e3bce_gdc_realn.bam 99588228315 BAM harmonized CPTAC3 0db8bf92-5008-4807-96a7-940e4e22fadc fbf71fd07516f2b2e9a310dd826b8994 {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00249.WXS.A C3N-00249 PDA WXS tissue_normal CPT0025760006 CPT0025760006.WholeExome.RP-1303.bam 30825757153 BAM aligned CPTAC3 c90b3e9b-c9a4-4388-ad0b-efdb6cb4459d 5db6de3294c4bdd916c0df06e7c3192e {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00249.WXS.A.hg38 C3N-00249 PDA WXS tissue_normal CPT0025760006 06e41ea8-02fb-402b-ad68-51acac08b514_wxs_gdc_realn.bam 42000679581 BAM harmonized CPTAC3 51f575fc-40d7-4916-849f-38cb3e3f1243 d393ed882568a27b0473a84bd1754cb0 {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00249.WXS.N C3N-00249 PDA WXS blood_normal CPT0028460002 CPT0028460002.WholeExome.RP-1303.bam 35300601184 BAM aligned CPTAC3 6a8b0cdc-4ac0-4a38-a9b5-08860a9e89b3 e297e0a8d12d08d57f43c0e73cf9fd9b {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00249.WXS.N.hg38 C3N-00249 PDA WXS blood_normal CPT0028460002 665f6e49-5c68-43f5-9fe9-67ab623e3bce_gdc_realn.bam 48891080490 BAM harmonized CPTAC3 aecbcc77-6390-477c-83f1-2736964af1eb 40f19cc4105e39d45cb430e984f1595f {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00249.WXS.T C3N-00249 PDA WXS tumor CPT0025750009_1 CPT0025750009_1.WholeExome.RP-1303.bam 48565101006 BAM aligned CPTAC3 a8fa94a4-714f-41d2-9166-bc9a8b953af3 2d176052c439f250e553e3921379e58e {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor"} -C3N-00249.WXS.T.hg38 C3N-00249 PDA WXS tumor CPT0025750009_1 d54a354f-a303-4689-9f1b-fba719fd79ef_wxs_gdc_realn.bam 66309173337 BAM harmonized CPTAC3 d7865025-7006-4123-a5bd-7d717fa971e1 10dc823d82e89de5363e9a112bc3619a {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor"} -C3N-00293.MethArray.Green.A C3N-00293 LUAD Methylation_Array tissue_normal CPT0008420009 203028200104_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 e4dae9a4-8fa6-487d-8d72-cec1fe0f3658 74f7e68def08bed2809650d5051e49a0 {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.MethArray.Green.T C3N-00293 LUAD Methylation_Array tumor CPT0008410009 202176290105_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e22b6d78-1420-4bba-8a29-1a84db3bf1b5 675329054ec1d94b8b335208daf75f8e {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor"} -C3N-00293.MethArray.Red.A C3N-00293 LUAD Methylation_Array tissue_normal CPT0008420009 203028200104_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 afb5238e-f6a7-4671-bea0-9ef07080de1a 79d9defb379eab88e2adbf0e4a2a6e7f {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.MethArray.Red.T C3N-00293 LUAD Methylation_Array tumor CPT0008410009 202176290105_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 27bc86ce-362d-4a88-9b0a-64c6ff2ce33b 8b75e426f81e245f19e73718ca6c0956 {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor"} -C3N-00293.miRNA-Seq.A.hg38 C3N-00293 LUAD miRNA-Seq tissue_normal CPT0008420006 3e9d0699-bb98-4f86-945c-5bb9cae012bc_mirnaseq_gdc_realn.bam 246322365 BAM harmonized CPTAC3 0d0e48b1-68f8-4657-ae7c-51fc87d199aa 12a583cff99bc855a7565cfee672c284 {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.miRNA-Seq.S32_L008_R1.A C3N-00293 LUAD miRNA-Seq tissue_normal CPT0008420006 181108_UNC31-K00269_0162_AH255GBBXY_ACTTGA_S32_L008_R1_001.unaln.bam 226102833 BAM S32_L008_R1 unaligned CPTAC3 3c9f0b67-1b96-41ed-bee4-a07b101ecc24 ea597613d796a0a57e950277d4d83fd6 {"aliquot_tag": "ALQ_231aa5e9", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.miRNA-Seq.S47_L004_R1.T C3N-00293 LUAD miRNA-Seq tumor CPT0008410006 181113_UNC31-K00269_0164_AH23NNBBXY_GAGTGG_S47_L004_R1_001.unaln.bam 304151894 BAM S47_L004_R1 unaligned CPTAC3 1a5239e5-bebe-43dd-9d56-2bf8474b4450 464f8b31dd02f96a7ffafb611d086110 {"aliquot_tag": "ALQ_64badf39", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00293.miRNA-Seq.T.hg38 C3N-00293 LUAD miRNA-Seq tumor CPT0008410006 11e70783-9451-4527-9f70-f5eb4ac1cdcc_mirnaseq_gdc_realn.bam 326652769 BAM harmonized CPTAC3 5e582363-c033-4f85-9b06-43c7e4a28bc9 0ad06dc0955fe5e9825a74282cd18b31 {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor"} -C3N-00293.RNA-Seq.chimeric.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.chimeric.gdc_realn.bam 122224168 BAM chimeric harmonized CPTAC3 0b390525-5d7c-45a5-8abb-387f73bf38d1 3520c0ae8a70cf40f3b853db240574c5 {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.RNA-Seq.chimeric.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.chimeric.gdc_realn.bam 85147575 BAM chimeric harmonized CPTAC3 d59b6ea1-1baf-4d8e-a7a9-d80fffb268c8 3a96902c616a8b5f86c2b8d573a0cdcc {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor"} -C3N-00293.RNA-Seq.genomic.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.genomic.gdc_realn.bam 7884877876 BAM genomic harmonized CPTAC3 1c30782d-091e-458f-9e36-2cf7504e2890 3c3aa69e5a9e871ff9c1e323397bfae6 {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.RNA-Seq.genomic.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.genomic.gdc_realn.bam 12196891163 BAM genomic harmonized CPTAC3 45d98a59-5f21-49be-b41e-76d39e2ab701 473ef8624c4684129f442b2a4c256b5c {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor"} -C3N-00293.RNA-Seq.S11_L003_R1.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R1_001.fastq.gz 5249740125 FASTQ S11_L003_R1 unaligned CPTAC3 cc06dcca-deb2-4ebf-81d9-b61b91ab84e2 e5c01d834dab610a694bcc17a38591dc {"aliquot_tag": "ALQ_64badf39", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00293.RNA-Seq.S11_L003_R2.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R2_001.fastq.gz 5574681099 FASTQ S11_L003_R2 unaligned CPTAC3 5734e054-6f57-45a6-8cab-6bfd3e4946e3 5907358b82b1a772c071fffb38181d1b {"aliquot_tag": "ALQ_64badf39", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00293.RNA-Seq.S3_L001_R1.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R1_001.fastq.gz 3409416057 FASTQ S3_L001_R1 unaligned CPTAC3 d7c1bd83-f32c-4f75-ae4f-5a57e89e4cd4 9076e6f615c33aeb50f3096f764631f1 {"aliquot_tag": "ALQ_231aa5e9", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.RNA-Seq.S3_L001_R2.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R2_001.fastq.gz 3765583991 FASTQ S3_L001_R2 unaligned CPTAC3 f9707f05-8ee0-49dd-8cc8-6758d528d4e8 81af7bb53568b6f6fd84eddbb1f7ff0c {"aliquot_tag": "ALQ_231aa5e9", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.RNA-Seq.transcriptome.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.transcriptome.gdc_realn.bam 7449514604 BAM transcriptome harmonized CPTAC3 ffa0b027-6578-4ff7-8f88-1c2e20c76ad6 0ae8c48b99cf7760ba7524eb31ec73ce {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.RNA-Seq.transcriptome.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.transcriptome.gdc_realn.bam 11540988777 BAM transcriptome harmonized CPTAC3 66365b1e-d0f7-474f-89cb-3d8505e5266b ceac54693ab29c66d744cd591c5942f5 {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor"} -C3N-00293.WGS.A C3N-00293 LUAD WGS tissue_normal CPT0008420009 CPT0008420009.WholeGenome.RP-1303.bam 60226399163 BAM aligned CPTAC3 654c9698-5b5d-46f3-a507-3f75384a4e30 197afd192a799ad721a85eb8b2ec632d {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.WGS.A.hg38 C3N-00293 LUAD WGS tissue_normal CPT0008420009 6904ca6f-304b-45ec-8b94-4a84d5abba18_wgs_gdc_realn.bam 89362877457 BAM harmonized CPTAC3 e1234f55-f36a-425a-be25-8fe701beda3d 33b12578b6c8c65328b5eff15545d038 {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.WGS.N C3N-00293 LUAD WGS blood_normal CPT0008430002 CPT0008430002.WholeGenome.RP-1303.bam 78241427572 BAM aligned CPTAC3 2985f867-e665-4e70-9770-c77839f196b2 f03984b3ade91d62a6ddb129c8129b1e {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal"} -C3N-00293.WGS.N.hg38 C3N-00293 LUAD WGS blood_normal CPT0008430002 4df34544-f9af-46ce-a1f0-926910b6686f_gdc_realn.bam 115527126689 BAM harmonized CPTAC3 d01ef2ab-cfa8-480b-b6a7-75e0af8d0f70 7e8031dc0dd352365df015f789c571fd {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal"} -C3N-00293.WGS.T C3N-00293 LUAD WGS tumor CPT0008410009 CPT0008410009.WholeGenome.RP-1303.bam 65990502199 BAM aligned CPTAC3 ca7fe1a3-f51c-46ce-b839-6616f87ad34a 6711ff0ea23787a1457564d50158a0c7 {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor"} -C3N-00293.WGS.T.hg38 C3N-00293 LUAD WGS tumor CPT0008410009 530076e9-9ce2-4216-9576-d4821852841a_gdc_realn.bam 97569704402 BAM harmonized CPTAC3 79885f34-dfea-459a-9d9a-ea66bf5f6e2e c2a50542cec0b3b4e453ddffe4f4ed94 {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor"} -C3N-00293.WXS.A C3N-00293 LUAD WXS tissue_normal CPT0008420009 CPT0008420009.WholeExome.RP-1303.bam 27078409849 BAM aligned CPTAC3 45799c7d-38f9-41b4-9021-5cf2dba9aa15 87e275e1b0fe53e9a3843991d872357e {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.WXS.A.hg38 C3N-00293 LUAD WXS tissue_normal CPT0008420009 6904ca6f-304b-45ec-8b94-4a84d5abba18_wxs_gdc_realn.bam 36456297290 BAM harmonized CPTAC3 09a6fdf9-0316-4ead-a271-a49b8515f4eb 26f5ba545e410fdb6b6317bf3a5cdcaa {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00293.WXS.N C3N-00293 LUAD WXS blood_normal CPT0008430002 CPT0008430002.WholeExome.RP-1303.bam 26906320054 BAM aligned CPTAC3 86b8706c-18c6-46cc-8ba7-fba1c0e11291 1d4ad106c00ccae6e286ca9da0998f29 {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal"} -C3N-00293.WXS.N.hg38 C3N-00293 LUAD WXS blood_normal CPT0008430002 4df34544-f9af-46ce-a1f0-926910b6686f_gdc_realn.bam 36851096449 BAM harmonized CPTAC3 243ff6d2-3847-4958-ab9c-0967e667f466 701fb06d2c9ccd8a02ab011a9bdd8672 {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal"} -C3N-00293.WXS.T C3N-00293 LUAD WXS tumor CPT0008410009 CPT0008410009.WholeExome.RP-1303.bam 45177677818 BAM aligned CPTAC3 3fc43303-6955-43f8-bc55-ee2afafda612 1171f4766ebee58a6d093d8ecf18de0b {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor"} -C3N-00293.WXS.T.hg38 C3N-00293 LUAD WXS tumor CPT0008410009 530076e9-9ce2-4216-9576-d4821852841a_gdc_realn.bam 62789380638 BAM harmonized CPTAC3 5433b105-3675-4d46-a617-2fa40c72a65f 70e33012bc134fe21622032e3bb97ceb {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor"} -C3N-00294.MethArray.Green.T C3N-00294 LUAD Methylation_Array tumor CPT0008450006 202184990063_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 71341e8a-9231-4728-b984-c4b7f0112b0e 6d70505fb6250ac799eb73aa429d873b {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00294.MethArray.Red.T C3N-00294 LUAD Methylation_Array tumor CPT0008450006 202184990063_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 eb170ebb-c8eb-4ff8-9fe0-6437acc7b09f 83e8b5e7f8e90a849612e1e9919e1875 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00294.miRNA-Seq.S7_L003_R1.T C3N-00294 LUAD miRNA-Seq tumor CPT0008450009 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L003_R1_001.unaln.bam 222126586 BAM S7_L003_R1 unaligned CPTAC3 8c2fc9d6-921d-4690-b270-10baabddd784 e18cbdc7a61eec5c91bab85ff23c0522 {"aliquot_tag": "ALQ_1856468", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00294.miRNA-Seq.T.hg38 C3N-00294 LUAD miRNA-Seq tumor CPT0008450009 141c19a6-44d6-43d5-9b0c-2436d3a0eaee_mirnaseq_gdc_realn.bam 244490797 BAM harmonized CPTAC3 62586c13-9287-4914-9674-66607f871e24 c1486bac6575b7dd97c5586bc228013d {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor"} -C3N-00294.RNA-Seq.chimeric.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.chimeric.gdc_realn.bam 85402503 BAM chimeric harmonized CPTAC3 21c7110b-6874-48b5-bcf9-302b7fbaecfc 8d9e46c911f5da963ea00e204e023c51 {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor"} -C3N-00294.RNA-Seq.genomic.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.genomic.gdc_realn.bam 6356952783 BAM genomic harmonized CPTAC3 e07a0fad-8ad8-4c36-95f7-e7f455d321a8 5a8e6f76758d3fe13c919f50a47185f4 {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor"} -C3N-00294.RNA-Seq.S8_L006_R1.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R1_001.fastq.gz 3047799893 FASTQ S8_L006_R1 unaligned CPTAC3 8b874fe7-02a2-4b8b-ae9c-0e7c74e25df3 e67a727fc3b8e8a989b46dec5e7c3146 {"aliquot_tag": "ALQ_1856468", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00294.RNA-Seq.S8_L006_R2.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R2_001.fastq.gz 3434909117 FASTQ S8_L006_R2 unaligned CPTAC3 38f54b19-88c4-4c88-97d5-c42d04821642 be99e6ae4849fc950d3ed76d54723d09 {"aliquot_tag": "ALQ_1856468", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00294.RNA-Seq.transcriptome.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.transcriptome.gdc_realn.bam 8129769764 BAM transcriptome harmonized CPTAC3 8de41fe9-56a6-4b60-b933-0eec0be97124 87c5668e99a43b1daa0ef2fca335b81a {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor"} -C3N-00294.Targeted.T C3N-00294 LUAD Targeted_Sequencing tumor CPT0008450006 CPT0008450006.CustomSelection.RP-1303.PDO-18786.bam 4674990457 BAM aligned CPTAC3 7f4b8e6e-1a71-413e-8d38-eff24dfdaa0d b1c9f9e8a379633e7775551c9383cc66 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00294.Targeted.T.hg38 C3N-00294 LUAD Targeted_Sequencing tumor CPT0008450006 93912139-ca7d-426f-9b58-00db34bac3c8_targetedsequencing_gdc_realn.bam 6560853419 BAM harmonized CPTAC3 c746d72d-506a-422d-a664-2d23b5ea045e e2e4b59cf03ace769e537731326dbd41 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00294.WGS.N C3N-00294 LUAD WGS blood_normal CPT0008490002 CPT0008490002.WholeGenome.RP-1303.bam 68544992006 BAM aligned CPTAC3 78ab0236-ff4f-49ff-99a4-a2b85c59b8f9 1690904829bc049a44ba438141a41287 {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00294.WGS.N.hg38 C3N-00294 LUAD WGS blood_normal CPT0008490002 1d890481-f944-4643-a8b7-643489006a49_gdc_realn.bam 104808950878 BAM harmonized CPTAC3 74f2bb03-dff8-4b6f-a724-a7661b1c6b9a 680e78593cea254705e1fdf971ef05c9 {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00294.WGS.T C3N-00294 LUAD WGS tumor CPT0008450006 CPT0008450006.WholeGenome.RP-1303.bam 62129163394 BAM aligned CPTAC3 80aa6b72-56a1-4c98-8892-080ce2cbf9f5 03104a13c603b7ce7b6b447a79cd252b {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00294.WGS.T.hg38 C3N-00294 LUAD WGS tumor CPT0008450006 93912139-ca7d-426f-9b58-00db34bac3c8_gdc_realn.bam 93514107468 BAM harmonized CPTAC3 818f2186-f50e-420f-9a4d-38e0db631e52 5c6a9f61b378935fed9b0882f4cbcac2 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00294.WXS.N C3N-00294 LUAD WXS blood_normal CPT0008490002 CPT0008490002.WholeExome.RP-1303.bam 30181324670 BAM aligned CPTAC3 fe874583-b8ed-4b16-af6a-c99b3ae3b789 82c0a9d3d4fd274e9eb578e50bea413d {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00294.WXS.N.hg38 C3N-00294 LUAD WXS blood_normal CPT0008490002 1d890481-f944-4643-a8b7-643489006a49_gdc_realn.bam 41288094231 BAM harmonized CPTAC3 07e2e2bb-355a-42b1-9f31-f05a6384c16b ca501fdbfffdb228bb5a65ad03745d05 {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00294.WXS.T C3N-00294 LUAD WXS tumor CPT0008450006 CPT0008450006.WholeExome.RP-1303.bam 28787906340 BAM aligned CPTAC3 3222c951-46da-441c-b5ce-65d469ea07ef 1d4a399c636df83f259f41a9ad065a5c {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00294.WXS.T.hg38 C3N-00294 LUAD WXS tumor CPT0008450006 93912139-ca7d-426f-9b58-00db34bac3c8_gdc_realn.bam 39192168418 BAM harmonized CPTAC3 dd47d085-78a0-4450-96a2-e1bfeabe12dd 860699acd375dc1678eca6946aab5025 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor"} -C3N-00295.MethArray.Green.T C3N-00295 HNSCC Methylation_Array tumor CPT0008520010 202176290095_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4db8cc9c-9741-49bb-b1e3-c2da64ad722a fa62a1e45b23e41a56acbdb771e6cc9a {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor"} -C3N-00295.MethArray.Red.T C3N-00295 HNSCC Methylation_Array tumor CPT0008520010 202176290095_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 57e7e0ca-6d7c-468f-9198-515e29c9a990 6b1368c85852f9910a12e45c77a72401 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor"} -C3N-00295.miRNA-Seq.S8_L003_R1.T C3N-00295 HNSCC miRNA-Seq tumor CPT0008520013 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L003_R1_001.unaln.bam 218079267 BAM S8_L003_R1 unaligned CPTAC3 43f72fcd-15d7-4104-8a07-61cd86aa4190 3817cb90cf14262edd4adebaece91255 {"aliquot_tag": "ALQ_8137b382", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00295.miRNA-Seq.T.hg38 C3N-00295 HNSCC miRNA-Seq tumor CPT0008520013 d8660498-643c-43d6-9c86-c2579697a18a_mirnaseq_gdc_realn.bam 254493016 BAM harmonized CPTAC3 7831544a-6d4c-47c9-884d-d96326b39507 2d2884c75ad91dcfd9fae4e9ea35ab1a {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor"} -C3N-00295.RNA-Seq.chimeric.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.chimeric.gdc_realn.bam 67050641 BAM chimeric harmonized CPTAC3 3d93f948-d5c7-4cf5-807b-02b198b4619d 40ba2f1487ed7ed8e0cc2c9cc42485a3 {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor"} -C3N-00295.RNA-Seq.genomic.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.genomic.gdc_realn.bam 9731604181 BAM genomic harmonized CPTAC3 9326aef9-6227-43f8-b4ef-6f1f17cc6944 aaae26f7b27267be126c5c43c5acfc65 {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor"} -C3N-00295.RNA-Seq.S7_L008_R1.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R1_001.fastq.gz 3863941490 FASTQ S7_L008_R1 unaligned CPTAC3 1c982cc8-17a7-4850-b250-c0e26fa6da6b a19c3d99de0080b72f957f97578dc762 {"aliquot_tag": "ALQ_8137b382", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00295.RNA-Seq.S7_L008_R2.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4154250558 FASTQ S7_L008_R2 unaligned CPTAC3 761b2689-7ca3-4037-a135-4767f1822400 a9f98980271c457e9e480320f8c21811 {"aliquot_tag": "ALQ_8137b382", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00295.RNA-Seq.transcriptome.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.transcriptome.gdc_realn.bam 9790173534 BAM transcriptome harmonized CPTAC3 a3c85ed3-89d1-40ee-840a-eb8394386beb c54011783f747d4f7244e127af5a68d4 {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor"} -C3N-00295.WGS.N C3N-00295 HNSCC WGS blood_normal CPT0008550002 CPT0008550002.WholeGenome.RP-1303.bam 68769407089 BAM aligned CPTAC3 d85f9b46-5452-46ab-84a6-5a4ec7d7a44d 1bcfee755ceef2269d5778b7b8e85fb2 {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal"} -C3N-00295.WGS.N.hg38 C3N-00295 HNSCC WGS blood_normal CPT0008550002 3a76fc90-18b6-4046-9e9b-feac9408b617_gdc_realn.bam 99621106246 BAM harmonized CPTAC3 3a61ca3a-8449-478d-9bec-ad78a9eaa34c 77f5350a7946d2be03677b49275f4d83 {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal"} -C3N-00295.WGS.T C3N-00295 HNSCC WGS tumor CPT0008520010 CPT0008520010.WholeGenome.RP-1303.bam 70710808692 BAM aligned CPTAC3 b66bb487-d847-4802-b7f0-bf39d09cb448 94f1edc2861291323aaa29fea2e448ff {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor"} -C3N-00295.WGS.T.hg38 C3N-00295 HNSCC WGS tumor CPT0008520010 ade05a36-b5c8-4aed-9156-e69d7ac1b32a_gdc_realn.bam 103306928832 BAM harmonized CPTAC3 445bf8ce-3015-451e-963f-8e76a50af6fc f65064c696e33801ce774a9d601d6ee6 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor"} -C3N-00295.WXS.N C3N-00295 HNSCC WXS blood_normal CPT0008550002 CPT0008550002.WholeExome.RP-1303.bam 23515079395 BAM aligned CPTAC3 d1269d82-3cdb-4fb4-9f9c-ff4ec870d82a 4e82339347a4a32ec6d82245562eb4fe {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal"} -C3N-00295.WXS.N.hg38 C3N-00295 HNSCC WXS blood_normal CPT0008550002 3a76fc90-18b6-4046-9e9b-feac9408b617_gdc_realn.bam 32400118627 BAM harmonized CPTAC3 6ccddafd-f040-4cb9-a789-c2711c89efc2 cabfabd3351699f6fd639a58586c08c5 {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal"} -C3N-00295.WXS.T C3N-00295 HNSCC WXS tumor CPT0008520010 CPT0008520010.WholeExome.RP-1303.bam 25215499833 BAM aligned CPTAC3 3561a1cf-b672-407f-a40b-01468f736313 21c808fc897e516ce711781f36b86aa5 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor"} -C3N-00295.WXS.T.hg38 C3N-00295 HNSCC WXS tumor CPT0008520010 ade05a36-b5c8-4aed-9156-e69d7ac1b32a_gdc_realn.bam 34306341120 BAM harmonized CPTAC3 15c663bc-dc3a-432d-9389-e23aaaddc686 b6f876bec260672c2669d5452a8a0061 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor"} -C3N-00297.MethArray.Green.T C3N-00297 HNSCC Methylation_Array tumor CPT0011130011 202184900104_R07C01_Grn.idat 13676256 IDAT Green NA CPTAC3 d06595d6-9fb1-4fec-b752-7187186a8d17 992390a2526cf4fa0d4cf7d31ffff2f4 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor"} -C3N-00297.MethArray.Red.T C3N-00297 HNSCC Methylation_Array tumor CPT0011130011 202184900104_R07C01_Red.idat 13676256 IDAT Red NA CPTAC3 9cdfd325-a807-4946-9eaa-1e4f75098cbd 6eb95b4f1d9e93cb6e92d85f60c179cc {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor"} -C3N-00297.miRNA-Seq.S48_L004_R1.T C3N-00297 HNSCC miRNA-Seq tumor CPT0011130008 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGGCA_S48_L004_R1_001.unaln.bam 160723775 BAM S48_L004_R1 unaligned CPTAC3 88604bda-2ef3-4732-ae5a-cca21e153275 1b29b478ca13026ccf50abb65b1a8cc7 {"aliquot_tag": "ALQ_f03d75a0", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00297.miRNA-Seq.T.hg38 C3N-00297 HNSCC miRNA-Seq tumor CPT0011130008 89633866-2352-4cbd-951b-5745206fd0af_mirnaseq_gdc_realn.bam 178151690 BAM harmonized CPTAC3 5965bafc-7cd2-433d-aca0-bb71b838d928 8490b6bd8648331213cbc5e4f9e15f77 {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor"} -C3N-00297.RNA-Seq.chimeric.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.chimeric.gdc_realn.bam 50000977 BAM chimeric harmonized CPTAC3 e84c6fbe-01b9-404b-9265-5f4666ca3d6f b45e90b1fc6b378b5c894563a7dd73ae {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor"} -C3N-00297.RNA-Seq.genomic.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.genomic.gdc_realn.bam 7251377139 BAM genomic harmonized CPTAC3 4346ca17-72bb-4eb9-a055-f490b9548c8c ad94040697094f3b515994defaa7cc03 {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor"} -C3N-00297.RNA-Seq.S6_L002_R1.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3051374895 FASTQ S6_L002_R1 unaligned CPTAC3 a3704d21-499b-4477-a72d-1a72523ec932 47d744add5412f4ab28b0a8f79d44e96 {"aliquot_tag": "ALQ_f03d75a0", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00297.RNA-Seq.S6_L002_R2.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3283338741 FASTQ S6_L002_R2 unaligned CPTAC3 4bd92b8d-2088-4e14-90e0-55776a4fd580 1f097bbd6f8e99e69a88475860f57e9e {"aliquot_tag": "ALQ_f03d75a0", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00297.RNA-Seq.transcriptome.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.transcriptome.gdc_realn.bam 8431304728 BAM transcriptome harmonized CPTAC3 f164b620-0ae8-46ce-88a1-42f15875bb54 5d640f5ebce2ff28982f8572d1d33a3e {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor"} -C3N-00297.WGS.N C3N-00297 HNSCC WGS blood_normal CPT0011220002 CPT0011220002.WholeGenome.RP-1303.bam 76589993105 BAM aligned CPTAC3 1b3e6358-5503-4b43-aced-e2ee4e3db77c f5393c7f6e9e6f2566266d653238c362 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00297.WGS.N.hg38 C3N-00297 HNSCC WGS blood_normal CPT0011220002 45660f8b-82d7-4a42-a1b6-9f3e418134d5_gdc_realn.bam 113431061234 BAM harmonized CPTAC3 347b4933-c795-412b-822a-9aa47c137237 76ce0cd257660beb3f69a2ce7718b069 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00297.WGS.T C3N-00297 HNSCC WGS tumor CPT0011130011 CPT0011130011.WholeGenome.RP-1303.bam 63955265775 BAM aligned CPTAC3 c8d46d58-9f83-425b-85d7-3d22d63a1b73 615257705a709331c224942e1909e825 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor"} -C3N-00297.WGS.T.hg38 C3N-00297 HNSCC WGS tumor CPT0011130011 cb3c02a0-bc32-4925-8c2b-71cee16a5360_gdc_realn.bam 94794746494 BAM harmonized CPTAC3 3acd1dff-51d3-486d-8c59-bed071b63dde b25100124f54e7115f3d237a10c33663 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor"} -C3N-00297.WXS.N C3N-00297 HNSCC WXS blood_normal CPT0011220002 CPT0011220002.WholeExome.RP-1303.bam 31301814166 BAM aligned CPTAC3 755986b1-6632-4440-8a3d-91c67150c164 c1e07e532f95f83f5d8ca40c3de81878 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00297.WXS.N.hg38 C3N-00297 HNSCC WXS blood_normal CPT0011220002 45660f8b-82d7-4a42-a1b6-9f3e418134d5_gdc_realn.bam 44316343388 BAM harmonized CPTAC3 b732feb2-aaa2-4972-bb11-0a8bbc9b34dd d4f9d26cf7e55474f80206c1fb02e972 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00297.WXS.T C3N-00297 HNSCC WXS tumor CPT0011130011 CPT0011130011.WholeExome.RP-1303.bam 36063350732 BAM aligned CPTAC3 34d80271-3cc1-41a6-8d8a-2109a0952174 1adb1dda1a7d33177d7bd9c7cf71e3c1 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor"} -C3N-00297.WXS.T.hg38 C3N-00297 HNSCC WXS tumor CPT0011130011 cb3c02a0-bc32-4925-8c2b-71cee16a5360_gdc_realn.bam 50477031364 BAM harmonized CPTAC3 a899b8fc-e27a-4824-b655-07030345c2b1 5ecbe9670f9d9205246e039c80ea186c {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor"} -C3N-00299.MethArray.Green.T C3N-00299 HNSCC Methylation_Array tumor CPT0008630006 202184900110_R07C01_Grn.idat 13676256 IDAT Green NA CPTAC3 c1bc8511-83d4-4038-a64c-616a8089be58 ee908b017b1ad89fc94565bbbea048e1 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor"} -C3N-00299.MethArray.Red.T C3N-00299 HNSCC Methylation_Array tumor CPT0008630006 202184900110_R07C01_Red.idat 13676256 IDAT Red NA CPTAC3 4b11eaf3-b63c-4680-9c3d-61b2a9eb3194 c5ab13d298556d90e7b11d05c89800e5 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor"} -C3N-00299.miRNA-Seq.S12_L005_R1.T C3N-00299 HNSCC miRNA-Seq tumor CPT0008630009 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L005_R1_001.unaln.bam 217779779 BAM S12_L005_R1 unaligned CPTAC3 403926f0-859f-4f5e-8812-5939368cbff5 e22d4c703766ee313a2bd1c932a8003b {"aliquot_tag": "ALQ_c30d30c3", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00299.miRNA-Seq.T.hg38 C3N-00299 HNSCC miRNA-Seq tumor CPT0008630009 7f775d33-ead4-4cf8-adeb-93c838408f77_mirnaseq_gdc_realn.bam 242506303 BAM harmonized CPTAC3 d9d6ca4d-b41c-412f-abf7-f30bc78ef6b6 d0ad482d78007bec4130e15e85349577 {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor"} -C3N-00299.RNA-Seq.chimeric.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.chimeric.gdc_realn.bam 79114765 BAM chimeric harmonized CPTAC3 17240db2-707e-430b-9125-cb25ec6732b3 66c9eb30b7816f8f7454b96b6d0fddcf {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor"} -C3N-00299.RNA-Seq.genomic.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.genomic.gdc_realn.bam 7884943547 BAM genomic harmonized CPTAC3 d8b6f430-225f-4a57-b806-63087dfdf27c c59b04f7825d6f52a283c7d578574d31 {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor"} -C3N-00299.RNA-Seq.S3_L008_R1.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 3766132773 FASTQ S3_L008_R1 unaligned CPTAC3 94cda123-843d-496d-ad34-4ada42f543f6 a4da99520d99f8b19aa1ba252f041cc5 {"aliquot_tag": "ALQ_c30d30c3", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00299.RNA-Seq.S3_L008_R2.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4094657090 FASTQ S3_L008_R2 unaligned CPTAC3 9ea5625c-20dd-48b6-a2d9-e11d3c268c26 a45b1c4881403bab84a06b91f9bfc8ff {"aliquot_tag": "ALQ_c30d30c3", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00299.RNA-Seq.transcriptome.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.transcriptome.gdc_realn.bam 11767888567 BAM transcriptome harmonized CPTAC3 89a7ecd6-c36d-44d9-8439-2d7e3e63aded ba4b3d47541923ed36f269916504d023 {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor"} -C3N-00299.WGS.N C3N-00299 HNSCC WGS blood_normal CPT0008670002 CPT0008670002.WholeGenome.RP-1303.bam 62247189218 BAM aligned CPTAC3 38b73e5b-752f-4689-9fb1-83a8f91049c3 126e9a52a29889245e4995a37fa3294e {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00299.WGS.N.hg38 C3N-00299 HNSCC WGS blood_normal CPT0008670002 777ac78e-f376-43e8-833c-3f1706ff74b8_gdc_realn.bam 94166790868 BAM harmonized CPTAC3 fafb3d0c-4fd3-433f-a922-19012047f4eb 398facdd7e358315075f309e2503f9fc {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00299.WGS.T C3N-00299 HNSCC WGS tumor CPT0008630006 CPT0008630006.WholeGenome.RP-1303.bam 77911099124 BAM aligned CPTAC3 65fa71f2-daef-4bd0-bcbe-54f74c9fc6cc 1d30dd9da9c9c912de0ba1a3464fc466 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor"} -C3N-00299.WGS.T.hg38 C3N-00299 HNSCC WGS tumor CPT0008630006 a0d54515-7b4c-476e-8f0a-1bc4c22acd39_gdc_realn.bam 115285058131 BAM harmonized CPTAC3 bed82688-289d-4acb-84d1-8e9401048928 9d28901a61deb8a96c50a035cb5d7911 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor"} -C3N-00299.WXS.N C3N-00299 HNSCC WXS blood_normal CPT0008670002 CPT0008670002.WholeExome.RP-1303.bam 30348731960 BAM aligned CPTAC3 56c18146-ae16-46c5-a689-3977e9cd14ca 31436c33c2b610c28f3653fb4cac9eef {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00299.WXS.N.hg38 C3N-00299 HNSCC WXS blood_normal CPT0008670002 777ac78e-f376-43e8-833c-3f1706ff74b8_gdc_realn.bam 41823840347 BAM harmonized CPTAC3 b00b3046-f5d5-407b-8b0d-cb255cd77b2d 428fb5be10182321485ab319c9ebcd5e {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00299.WXS.T C3N-00299 HNSCC WXS tumor CPT0008630006 CPT0008630006.WholeExome.RP-1303.bam 33803647775 BAM aligned CPTAC3 8418ea22-deb0-448d-8692-e536cf7becf9 d3cff289c693d0016aabe0541e1e5c0c {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor"} -C3N-00299.WXS.T.hg38 C3N-00299 HNSCC WXS tumor CPT0008630006 a0d54515-7b4c-476e-8f0a-1bc4c22acd39_gdc_realn.bam 46802692357 BAM harmonized CPTAC3 14615c74-e394-46a8-b1c3-ed6f49819246 3dbe7a9caa9255b2ed44be18178113eb {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor"} -C3N-00302.ADD_9d8fe0f.MethArray.Green.T C3N-00302 PDA Methylation_Array tumor CPT0008750012 202184900148_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 c833c77d-68ef-4fa7-9ea8-51f8e0d3747a c4d1e1f1e387962b211398a4b350bb3d {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00302.ADD_9d8fe0f.MethArray.Red.T C3N-00302 PDA Methylation_Array tumor CPT0008750012 202184900148_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 2d13c5a4-f1de-48a0-abec-d3f45f9649dd d42872257f96999fb4228275e4f95d8a {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00302.ADD_9d8fe0f.WGS.T C3N-00302 PDA WGS tumor CPT0008750012 CPT0008750012.WholeGenome.RP-1303.bam 65241648925 BAM aligned CPTAC3 90cd7889-cead-4525-8c40-7117a68fe456 44cd94489e7f24c9bdc3199e69b3aaef {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00302.ADD_9d8fe0f.WGS.T.hg38 C3N-00302 PDA WGS tumor CPT0008750012 c702097d-4a63-4f18-9928-c89d27fcfaaf_gdc_realn.bam 98394166226 BAM harmonized CPTAC3 bdb0f4c0-d499-459a-9cdf-9f5df1d56b67 a5a3a1b989022c748adc33a90bfbccc6 {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00302.ADD_9d8fe0f.WXS.T C3N-00302 PDA WXS tumor CPT0008750012 CPT0008750012.WholeExome.RP-1303.bam 35820800270 BAM aligned CPTAC3 fb534c3d-f92a-4c20-82c6-a54fab71e878 db8c9b7b5e339f3e1aa62b9173740fc6 {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00302.ADD_9d8fe0f.WXS.T.hg38 C3N-00302 PDA WXS tumor CPT0008750012 c702097d-4a63-4f18-9928-c89d27fcfaaf_gdc_realn.bam 48622399305 BAM harmonized CPTAC3 7edc91e9-a711-47ab-9faf-4944b4419e0a f2885515057a5f599297779009ffbf8d {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00302.miRNA-Seq.S11_L003_R1.T C3N-00302 PDA miRNA-Seq tumor CPT0008750009 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L003_R1_001.unaln.bam 260612851 BAM S11_L003_R1 unaligned CPTAC3 0196b828-604c-4241-b9ed-bf98ced75253 8198ce1672679cb78b429dc3caf8c7b7 {"aliquot_tag": "ALQ_871116c6", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00302.miRNA-Seq.T.hg38 C3N-00302 PDA miRNA-Seq tumor CPT0008750009 fa0d00a2-2539-45d5-af97-36f333c01e07_mirnaseq_gdc_realn.bam 280982993 BAM harmonized CPTAC3 b58c9eb1-8660-4be2-b0b0-47e0013637d1 613e24ee2de414df99d7ff65a3ea804c {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor"} -C3N-00302.RNA-Seq.chimeric.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.chimeric.gdc_realn.bam 69093614 BAM chimeric harmonized CPTAC3 933f9ca3-6d56-4943-9e77-30f6a9fd93ee 869ccc4274e9619c7e554ec097437d84 {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor"} -C3N-00302.RNA-Seq.genomic.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.genomic.gdc_realn.bam 8056196040 BAM genomic harmonized CPTAC3 2642c7df-3a23-4022-950a-afb559055b1c ede101b31c91082f47e1cfadf2435d8a {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor"} -C3N-00302.RNA-Seq.S1_L008_R1.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R1_001.fastq.gz 3558625479 FASTQ S1_L008_R1 unaligned CPTAC3 82397376-7221-4de6-aa6a-1debda5561ac db7c45f437a69fcfb4efb10390743b30 {"aliquot_tag": "ALQ_871116c6", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00302.RNA-Seq.S1_L008_R2.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R2_001.fastq.gz 3833619168 FASTQ S1_L008_R2 unaligned CPTAC3 da8d50a5-d703-4617-9895-33814419e004 3ecd9251e27fd07cc46f2cb1353ed3f1 {"aliquot_tag": "ALQ_871116c6", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00302.RNA-Seq.transcriptome.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.transcriptome.gdc_realn.bam 8911557462 BAM transcriptome harmonized CPTAC3 ffdc7239-f94e-4459-a1b1-84cfb7449588 2b0214c1e9cd64ad0e60764e658bc091 {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor"} -C3N-00302.WGS.N C3N-00302 PDA WGS blood_normal CPT0008790002 CPT0008790002.WholeGenome.RP-1303.bam 76432662163 BAM aligned CPTAC3 7947cc1b-413c-4d33-9edd-d838b88b8b5e 43ace2add928eb51cfc8453d0e39ffd9 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00302.WGS.N.hg38 C3N-00302 PDA WGS blood_normal CPT0008790002 330ca867-0583-4f3f-bd1b-03969b6a3ad3_gdc_realn.bam 113574527429 BAM harmonized CPTAC3 7f1601c1-dc72-4989-b752-a7e76fe983d3 fa8759c361842eb45b6f3bcab65c3942 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00302.WXS.N C3N-00302 PDA WXS blood_normal CPT0008790002 CPT0008790002.WholeExome.RP-1303.bam 28695065956 BAM aligned CPTAC3 485d8560-03e7-4a71-afa0-f9532a0b19ec 82fe8b905d4f3188fc01a227347b94b6 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00302.WXS.N.hg38 C3N-00302 PDA WXS blood_normal CPT0008790002 330ca867-0583-4f3f-bd1b-03969b6a3ad3_gdc_realn.bam 39347880814 BAM harmonized CPTAC3 90173e9e-8c68-4277-a8f6-416a34591e86 891900593c7cd6c6eda99edf1a7c14a2 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00302.WXS.T C3N-00302 PDA WXS tumor CPT0008750012_1 CPT0008750012_1.WholeExome.RP-1303.bam 59806493861 BAM aligned CPTAC3 2c673b46-8385-42ca-8ca0-5b72fe8dda7c 82cb113f420cebc609e9973bd51afc26 {"aliquot_tag": "ALQ_f0b99952", "gdc_sample_type": "Primary Tumor"} -C3N-00302.WXS.T.hg38 C3N-00302 PDA WXS tumor CPT0008750012_1 34833257-46da-4477-8c58-38147bae6628_wxs_gdc_realn.bam 81267573344 BAM harmonized CPTAC3 be134e69-4b41-4997-b9a8-a47b7dc533c7 3d3da26c8c4914eb28fd9147c6d30928 {"aliquot_tag": "ALQ_f0b99952", "gdc_sample_type": "Primary Tumor"} -C3N-00303.MethArray.Green.T C3N-00303 PDA Methylation_Array tumor CPT0008800006 202163550076_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7d65186f-cd31-4533-82a3-474815992abf c0d4d45ea4851c27e4a5ceb195b9ea46 {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor"} -C3N-00303.MethArray.Red.T C3N-00303 PDA Methylation_Array tumor CPT0008800006 202163550076_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ed3ac9f-21ad-44ff-a884-79df95924a76 3b8722c8b5d01f0bb7bf13a138c74336 {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor"} -C3N-00303.miRNA-Seq.S12_L003_R1.T C3N-00303 PDA miRNA-Seq tumor CPT0008800009 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L003_R1_001.unaln.bam 308862040 BAM S12_L003_R1 unaligned CPTAC3 a203ea68-a10d-4697-a3bf-28c6dc0104f1 9b55b94a685e8ef03eb1f3409376d3ff {"aliquot_tag": "ALQ_bea72b63", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00303.miRNA-Seq.T.hg38 C3N-00303 PDA miRNA-Seq tumor CPT0008800009 bc6eb149-903a-48b2-9b11-530c652c96e7_mirnaseq_gdc_realn.bam 331174161 BAM harmonized CPTAC3 aa279b7c-6835-4b1b-a08d-86459787669e 1ad3d76f2903ab390b3381f9e16fe8c8 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor"} -C3N-00303.RNA-Seq.chimeric.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.chimeric.gdc_realn.bam 104575317 BAM chimeric harmonized CPTAC3 7ba5e864-304f-4646-9e31-0797f77949fa 4ee6ccb411a75da0cbd0de2758c1a941 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor"} -C3N-00303.RNA-Seq.genomic.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.genomic.gdc_realn.bam 9475427760 BAM genomic harmonized CPTAC3 66ae7440-81f6-445d-80ec-6a9ec0509f24 4bb550939c22f42bc2b2b7d3bf40b021 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor"} -C3N-00303.RNA-Seq.S11_L006_R1.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R1_001.fastq.gz 4037979547 FASTQ S11_L006_R1 unaligned CPTAC3 a2205d97-18a4-469a-aec7-8aaee1908bda 5afbc304bf90b6dee34da58449c1353a {"aliquot_tag": "ALQ_bea72b63", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00303.RNA-Seq.S11_L006_R2.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R2_001.fastq.gz 4370195399 FASTQ S11_L006_R2 unaligned CPTAC3 cac8806d-8099-4e16-b51e-e6803842f737 6f9edf7682c8111736f262617d0c125e {"aliquot_tag": "ALQ_bea72b63", "sample": "S11", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00303.RNA-Seq.transcriptome.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.transcriptome.gdc_realn.bam 9297622500 BAM transcriptome harmonized CPTAC3 bd5f6132-3168-4a18-b513-a040f0a0ad65 0e23c446396e01d5cc4c3c3a636a09a8 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WGS.N C3N-00303 PDA WGS blood_normal CPT0008850002 CPT0008850002.WholeGenome.RP-1303.bam 64306266108 BAM aligned CPTAC3 f9820f97-adad-4e63-85ea-7b49cd2a9551 59e4f3e976c6eb7b787f0bf067fa024c {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00303.WGS.N.hg38 C3N-00303 PDA WGS blood_normal CPT0008850002 39d21868-9ae1-4149-b5b0-614e0e53bd40_gdc_realn.bam 94635126439 BAM harmonized CPTAC3 1470eac9-1e5e-47fa-81d5-2064fa403b3f 1d1517c4850ea5a9dbff6fe1e8fd3baa {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00303.WGS.T C3N-00303 PDA WGS tumor CPT0008800006_1 CPT0008800006_1.WholeGenome.RP-1303.bam 151848028365 BAM aligned CPTAC3 baa1aa87-d080-4a7a-91be-676ff40b3fea d28e46e65d5af3ecb05152bcb1d344dd {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WGS.T C3N-00303 PDA WGS tumor CPT0008800006 CPT0008800006.WholeGenome.RP-1303.bam 66738847362 BAM aligned CPTAC3 b26601ef-c3f1-4176-a082-4ce8d68daf4f 93be1b8c73d6703690730753c0bb6b0d {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WGS.T.hg38 C3N-00303 PDA WGS tumor CPT0008800006_1 7c67951a-b14b-428c-a410-d56a58ba63e9_wgs_gdc_realn.bam 224777201240 BAM harmonized CPTAC3 4ec78616-b1f7-42fa-a6f1-ebd901e06b25 2aee7b5dd6c0e38aa858161b67c44575 {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WGS.T.hg38 C3N-00303 PDA WGS tumor CPT0008800006 60e7bc90-a701-44e2-b205-6a3654d3c4c9_gdc_realn.bam 99079301964 BAM harmonized CPTAC3 cdd8f375-2443-4632-8ae8-3ddbe63ec68a 3080c6e5e1e873f3b3a33a3801e90aca {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WXS.N C3N-00303 PDA WXS blood_normal CPT0008850002 CPT0008850002.WholeExome.RP-1303.bam 30030055933 BAM aligned CPTAC3 5e1789ad-24ba-49c0-aed0-b03fe75d4df0 6609db8066bd3fbbb0dd84527d001755 {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00303.WXS.N.hg38 C3N-00303 PDA WXS blood_normal CPT0008850002 39d21868-9ae1-4149-b5b0-614e0e53bd40_gdc_realn.bam 40974308921 BAM harmonized CPTAC3 b3123b75-70f9-414f-add9-635c7a435997 60a50355716c44f13b9623716742365d {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00303.WXS.T C3N-00303 PDA WXS tumor CPT0008800006_1 CPT0008800006_1.WholeExome.RP-1303.bam 58434482109 BAM aligned CPTAC3 f05586e3-f184-42fa-a60e-6ad8e549ba03 7539bd1c115ce2aebf2fd19d4a0d215b {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WXS.T C3N-00303 PDA WXS tumor CPT0008800006 CPT0008800006.WholeExome.RP-1303.bam 29599046522 BAM aligned CPTAC3 e253819a-7eb8-49a3-9001-71e6b9cd2624 4e40aeba436a815436804243d576304f {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WXS.T.hg38 C3N-00303 PDA WXS tumor CPT0008800006_1 7c67951a-b14b-428c-a410-d56a58ba63e9_wxs_gdc_realn.bam 80904351093 BAM harmonized CPTAC3 0a3ebdcb-8ddd-4d3e-b777-594131832d40 cb0110d33e575ae3d164330a20cbfa68 {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor"} -C3N-00303.WXS.T.hg38 C3N-00303 PDA WXS tumor CPT0008800006 60e7bc90-a701-44e2-b205-6a3654d3c4c9_gdc_realn.bam 41189614596 BAM harmonized CPTAC3 d7a6f87c-be8b-4e62-8204-4841eda86b79 527c21b43c50dab26947f26437f4e8bc {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor"} -C3N-00305.MethArray.Green.T C3N-00305 CCRCC Methylation_Array tumor CPT0011240009 202178770045_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 a335d658-b90f-4647-b6b1-f62df531d227 200f1b7593d84dfefeb3dd013813d74e {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor"} -C3N-00305.MethArray.Red.T C3N-00305 CCRCC Methylation_Array tumor CPT0011240009 202178770045_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 ddacac18-50ed-4008-99a2-5acd8503a283 f532b7d440f60fb2c069a10d3ecc6b6d {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor"} -C3N-00305.miRNA-Seq.S31_L004_R1.T C3N-00305 CCRCC miRNA-Seq tumor CPT0011240005 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L004_R1_001.unaln.bam 261116012 BAM S31_L004_R1 unaligned CPTAC3 e1261a9a-4b0b-4f7b-a18f-5a180145e190 935849f0ef3334d0007ba1d60d9a36bf {"aliquot_tag": "ALQ_ba38a7a3", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00305.miRNA-Seq.T.hg38 C3N-00305 CCRCC miRNA-Seq tumor CPT0011240005 ac0ea2af-9fd4-431c-a79d-4a197381f522_mirnaseq_gdc_realn.bam 288008647 BAM harmonized CPTAC3 324ba98a-be23-41b0-924e-918cd5337892 bb021bdabb726bb85e50a5196f28d80e {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor"} -C3N-00305.RNA-Seq.chimeric.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.chimeric.gdc_realn.bam 85524047 BAM chimeric harmonized CPTAC3 17c0eb6d-4253-4c31-951d-a1d92d46cea9 8a3d9f350405f23b34afe3d02e1471fa {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor"} -C3N-00305.RNA-Seq.genomic.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.genomic.gdc_realn.bam 8769367772 BAM genomic harmonized CPTAC3 8b7ade40-b06f-49e5-8754-601ab7764fb8 0dd0401070b1d3c77769a743a76efcf3 {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor"} -C3N-00305.RNA-Seq.S7_L002_R1.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R1_001.fastq.gz 3932273979 FASTQ S7_L002_R1 unaligned CPTAC3 f0323d74-da11-4d79-99da-99b0b1d33f72 9c3e8bbbc7136214a6b58cd442912a3b {"aliquot_tag": "ALQ_ba38a7a3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00305.RNA-Seq.S7_L002_R2.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R2_001.fastq.gz 4261136184 FASTQ S7_L002_R2 unaligned CPTAC3 e74b306e-ad75-4a6e-a475-6dbd9448a5f7 cd1f2480ffd083f40ea96c2af94bf6d3 {"aliquot_tag": "ALQ_ba38a7a3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00305.RNA-Seq.transcriptome.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.transcriptome.gdc_realn.bam 10417896492 BAM transcriptome harmonized CPTAC3 353d8272-99d5-4856-89aa-3fe455b9c3e8 f47f8bee5ed83d528c4ec51093b6d69e {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor"} -C3N-00305.WGS.N C3N-00305 CCRCC WGS blood_normal CPT0011270002 CPT0011270002.WholeGenome.RP-1303.bam 60068684575 BAM aligned CPTAC3 e624c06c-f138-446e-bf87-dd96f9ac8e18 e88a7719d4909e74f28f1f1d77be7c83 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00305.WGS.N.hg38 C3N-00305 CCRCC WGS blood_normal CPT0011270002 7aa7473c-d400-4b86-a30d-1f0e3359fde9_gdc_realn.bam 87981277539 BAM harmonized CPTAC3 0beee5c4-e68d-4c88-b431-eb43a2219bb0 ef34b6cf243ad1205535202c17e25ea0 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00305.WGS.T C3N-00305 CCRCC WGS tumor CPT0011240009 CPT0011240009.WholeGenome.RP-1303.bam 58138510861 BAM aligned CPTAC3 e3c72249-5640-49c0-bf5e-5af3ada489e5 ea644e63409c2c7cad094252d417a34a {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor"} -C3N-00305.WGS.T.hg38 C3N-00305 CCRCC WGS tumor CPT0011240009 9ee3947f-6c74-4886-b0a8-4f33192cf014_gdc_realn.bam 84769279272 BAM harmonized CPTAC3 935d892b-1b8f-4288-b8d3-6825ae555713 f681b478026032917086d3ffb8839446 {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor"} -C3N-00305.WXS.N C3N-00305 CCRCC WXS blood_normal CPT0011270002 CPT0011270002.WholeExome.RP-1303.bam 26191978140 BAM aligned CPTAC3 4c5ff6b2-914b-421a-9b1a-5d4dfff9c8b4 0360ea3546e85b4dfe57d998c8f37f21 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00305.WXS.N.hg38 C3N-00305 CCRCC WXS blood_normal CPT0011270002 7aa7473c-d400-4b86-a30d-1f0e3359fde9_gdc_realn.bam 35683515206 BAM harmonized CPTAC3 5bf8a1b0-8ba1-4166-b187-8b9417b56de5 a3ed3c37a4a2932c8dd719f70db9cb26 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00305.WXS.T C3N-00305 CCRCC WXS tumor CPT0011240009 CPT0011240009.WholeExome.RP-1303.bam 23766147993 BAM aligned CPTAC3 e3944261-f996-429c-9b32-4e7aa72dfba8 a8527a7781a0ea8a7bb76fe79cf4ec2e {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor"} -C3N-00305.WXS.T.hg38 C3N-00305 CCRCC WXS tumor CPT0011240009 9ee3947f-6c74-4886-b0a8-4f33192cf014_gdc_realn.bam 32679409297 BAM harmonized CPTAC3 fee5263a-170f-4f11-8ee5-e1195648b83e 970f56e8fbbdf60478e01351ab55d530 {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor"} -C3N-00306.MethArray.Green.T C3N-00306 HNSCC Methylation_Array tumor CPT0011290008 202184900127_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 91446855-2d28-40a8-aa1c-4318665b6242 ec9b343c91b2703fc676fdb83e9f7a11 {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor"} -C3N-00306.MethArray.Red.T C3N-00306 HNSCC Methylation_Array tumor CPT0011290008 202184900127_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 abe6b4a4-6900-4a13-8940-4c94f40de57f e156d09f959eeeaff4f1726723ecda9e {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor"} -C3N-00306.miRNA-Seq.A.hg38 C3N-00306 HNSCC miRNA-Seq tissue_normal CPT0011320006 4f872d51-24e0-4900-900a-cdb5dd41435c_mirnaseq_gdc_realn.bam 268871934 BAM harmonized CPTAC3 7bd84bd2-04fd-4b2b-90ec-4b479574d6a4 485f80922efa96178529197e22e1bb78 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.miRNA-Seq.S26_L004_R1.T C3N-00306 HNSCC miRNA-Seq tumor CPT0011290005 181012_UNC32-K00270_0124_AH223CBBXY_ACAGTG_S26_L004_R1_001.unaln.bam 218917762 BAM S26_L004_R1 unaligned CPTAC3 3c34ae49-5901-46ea-b87d-e3d27c2fe669 2b974c737ab79d2db953e19631672ddc {"aliquot_tag": "ALQ_42a86312", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00306.miRNA-Seq.S28_L005_R1.A C3N-00306 HNSCC miRNA-Seq tissue_normal CPT0011320006 181119_UNC31-K00269_0165_AH27WCBBXY_TGACCA_S28_L005_R1_001.unaln.bam 248485942 BAM S28_L005_R1 unaligned CPTAC3 89a12a51-06a3-4a7f-98f1-f4f44889b649 8e5eebf3307ebcea64b10963ab8cc7b2 {"aliquot_tag": "ALQ_672dd01c", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.miRNA-Seq.T.hg38 C3N-00306 HNSCC miRNA-Seq tumor CPT0011290005 6b6f1abb-5ca7-446e-9864-c53c5211b83e_mirnaseq_gdc_realn.bam 243310161 BAM harmonized CPTAC3 b934af06-1ac6-4380-a19e-b626c9c868fa 6b4e792342c7e2c5037c3167fed97f65 {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor"} -C3N-00306.RNA-Seq.chimeric.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.chimeric.gdc_realn.bam 27327787 BAM chimeric harmonized CPTAC3 f555bfd6-e787-4c15-b5db-65070608adf3 948f63791fb75c9615a842f1e7e1d4c5 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.RNA-Seq.chimeric.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.chimeric.gdc_realn.bam 77324130 BAM chimeric harmonized CPTAC3 c0072cf7-764c-46a1-9cc2-d84ec023b199 66f93c6dae87cffcf57a15777555325c {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor"} -C3N-00306.RNA-Seq.genomic.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.genomic.gdc_realn.bam 8203178062 BAM genomic harmonized CPTAC3 c11bbca0-2325-4e16-a8d5-8c3cde2464c5 46cc346047a094862e4565cb03d58c55 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.RNA-Seq.genomic.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.genomic.gdc_realn.bam 11513718505 BAM genomic harmonized CPTAC3 9927dffe-7205-4aeb-a9a9-f58a5a49122b b99330786fe1db5ab685b7cdb54712cd {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor"} -C3N-00306.RNA-Seq.S17_L005_R1.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 5235213428 FASTQ S17_L005_R1 unaligned CPTAC3 9995060c-2016-4690-a7c9-cb39122adbd1 b522e0c1d5d912e7d6c79fbe608ad35e {"aliquot_tag": "ALQ_42a86312", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00306.RNA-Seq.S17_L005_R2.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 5522054475 FASTQ S17_L005_R2 unaligned CPTAC3 0e99fd41-6b4d-4d8b-8aca-5b06c619b69b 3c437fcf9a2d79ba9cfc3d38fb49523f {"aliquot_tag": "ALQ_42a86312", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00306.RNA-Seq.S4_L007_R1.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3871783418 FASTQ S4_L007_R1 unaligned CPTAC3 a467dacf-bb8c-4987-8ede-d133d9eff823 8a5a0f35dcf5e02d49a42afdce53d421 {"aliquot_tag": "ALQ_672dd01c", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.RNA-Seq.S4_L007_R2.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4076681913 FASTQ S4_L007_R2 unaligned CPTAC3 a2c9b387-c1f2-4506-8372-06c1114d38bf b42f77b04e7d7c52a17a0e3f66e95b6b {"aliquot_tag": "ALQ_672dd01c", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.RNA-Seq.transcriptome.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.transcriptome.gdc_realn.bam 12110336620 BAM transcriptome harmonized CPTAC3 b97eb161-f56b-4318-8ab7-90e06ca30bb3 88ced4741c35d97fa054b5d084478c75 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.RNA-Seq.transcriptome.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.transcriptome.gdc_realn.bam 14220644459 BAM transcriptome harmonized CPTAC3 2fa9f053-60c4-4a77-8870-705d666392fa bc845c88ed6f1faf2e46defd20ceb4b2 {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor"} -C3N-00306.WGS.N C3N-00306 HNSCC WGS blood_normal CPT0011380006 CPT0011380006.WholeGenome.RP-1303.bam 79140326544 BAM aligned CPTAC3 76ba8c6b-ca31-442a-be03-23460b07b21a 36e2d5810f3193bc3ab03220ca9f5951 {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00306.WGS.N.hg38 C3N-00306 HNSCC WGS blood_normal CPT0011380006 c970ee29-4d02-480d-b75d-26389fe250bd_gdc_realn.bam 118488589881 BAM harmonized CPTAC3 11d47de2-82bb-4a6e-a63e-e1e0f741ac6f 9d938547d6a2efd489226e52bb0745f0 {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00306.WGS.T C3N-00306 HNSCC WGS tumor CPT0011290008 CPT0011290008.WholeGenome.RP-1303.bam 68754956849 BAM aligned CPTAC3 5d3be551-b9f3-4cf0-89b8-4622438a3578 d42d39734f1b9ff8ab80a34e52d16bd2 {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor"} -C3N-00306.WGS.T.hg38 C3N-00306 HNSCC WGS tumor CPT0011290008 acfd2032-d59d-42cb-aaeb-1f19d3a49ce1_gdc_realn.bam 101626515893 BAM harmonized CPTAC3 8044494a-a134-41a8-a966-2f82009c156f afba00e9b84eaa964667bd680b99709d {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor"} -C3N-00306.WXS.A C3N-00306 HNSCC WXS tissue_normal CPT0011320009 CPT0011320009.WholeExome.RP-1303.bam 30965699754 BAM aligned CPTAC3 eacff357-7185-45f8-973e-c7ce69ca1d3b 98b258ff168a0fa0b8d12a8a4fd87c15 {"aliquot_tag": "ALQ_f792cd8d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.WXS.A.hg38 C3N-00306 HNSCC WXS tissue_normal CPT0011320009 04570fd2-2394-4b4a-a6e9-8ed6a0fd4ed9_wxs_gdc_realn.bam 41193288382 BAM harmonized CPTAC3 694189f6-e158-4976-8dec-bea8ee2e65e9 223f24a6e1682218e63683c94e919009 {"aliquot_tag": "ALQ_f792cd8d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00306.WXS.N C3N-00306 HNSCC WXS blood_normal CPT0011380006 CPT0011380006.WholeExome.RP-1303.bam 32324992510 BAM aligned CPTAC3 63accee6-2193-4558-89d8-a9b59b0e7e31 3f79e81c308485de8e1875a2f1eaef4f {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00306.WXS.N.hg38 C3N-00306 HNSCC WXS blood_normal CPT0011380006 c970ee29-4d02-480d-b75d-26389fe250bd_gdc_realn.bam 44233401415 BAM harmonized CPTAC3 5e9dcacf-e48a-4786-b858-ed24a714e9d3 6b581d9c1d50dea750ee73b6b25fe344 {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00306.WXS.T C3N-00306 HNSCC WXS tumor CPT0011290008 CPT0011290008.WholeExome.RP-1303.bam 27250357346 BAM aligned CPTAC3 ddfdc2cb-16a3-44ba-9c8b-66eb613ace2f c87a3a540ae9eb8a0498cce93e25f5da {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor"} -C3N-00306.WXS.T.hg38 C3N-00306 HNSCC WXS tumor CPT0011290008 acfd2032-d59d-42cb-aaeb-1f19d3a49ce1_gdc_realn.bam 37218186573 BAM harmonized CPTAC3 d0248d82-4e62-4fdd-88ee-1064edc84603 d9143ddeb272357aaf0422e866b86476 {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor"} -C3N-00307.MethArray.Green.T C3N-00307 HNSCC Methylation_Array tumor CPT0008930006 202184900149_R06C01_Grn.idat 13676256 IDAT Green NA CPTAC3 1d5f88a4-c3dc-46f0-b301-a6177bafa7df d1143363f7e42e97eb0dba75185cab45 {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor"} -C3N-00307.MethArray.Red.T C3N-00307 HNSCC Methylation_Array tumor CPT0008930006 202184900149_R06C01_Red.idat 13676256 IDAT Red NA CPTAC3 bc79276d-218d-4acb-9c28-75496d54bffd 31096aaa5ce900efdac07bb6be237ab1 {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor"} -C3N-00307.miRNA-Seq.A.hg38 C3N-00307 HNSCC miRNA-Seq tissue_normal CPT0008960005 3eee06b6-4307-4e1c-bca3-ab7c726565d6_mirnaseq_gdc_realn.bam 202651022 BAM harmonized CPTAC3 28d86cb0-16f2-42a4-bc4b-16bc78bb98a9 4b59a80dca534c9569060f506325ad91 {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.miRNA-Seq.S13_L003_R1.T C3N-00307 HNSCC miRNA-Seq tumor CPT0008930009 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L003_R1_001.unaln.bam 247273408 BAM S13_L003_R1 unaligned CPTAC3 3d5e5cbe-ef4a-4e04-9a37-d1240f1dbe0e c13313dbc47f1014ac79ccbaa17967c8 {"aliquot_tag": "ALQ_325b8216", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00307.miRNA-Seq.S23_L001_R1.A C3N-00307 HNSCC miRNA-Seq tissue_normal CPT0008960005 181119_UNC31-K00269_0165_AH27WCBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 180817047 BAM S23_L001_R1 unaligned CPTAC3 8d59a733-7c44-45a2-8231-34dd3a80c72e af632d6b88a399ee17c871bacbef87fb {"aliquot_tag": "ALQ_f30d414d", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.miRNA-Seq.T.hg38 C3N-00307 HNSCC miRNA-Seq tumor CPT0008930009 c1a379d7-efc0-4ce6-9072-0fda975e50c4_mirnaseq_gdc_realn.bam 275051969 BAM harmonized CPTAC3 6eacf2a7-5dd3-489b-a4a6-7d57019eb12a 71b126597b4e6d815d08a90112b55029 {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor"} -C3N-00307.RNA-Seq.chimeric.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.chimeric.gdc_realn.bam 31858254 BAM chimeric harmonized CPTAC3 41e1cc80-c1aa-4ad8-8180-82f91d1f818c 2362122e8bfab782e4e57cc0d657fd05 {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.RNA-Seq.chimeric.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.chimeric.gdc_realn.bam 70101209 BAM chimeric harmonized CPTAC3 28f9a1be-f11c-4ee4-9d96-98e7daf281f5 c7418497a460c5556ad588a3f32d0ecc {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor"} -C3N-00307.RNA-Seq.genomic.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.genomic.gdc_realn.bam 8243246758 BAM genomic harmonized CPTAC3 db3550c2-1349-4a45-8ab3-6778d757fc87 7f6b7d0b80c2e11ad8e308359064fe01 {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.RNA-Seq.genomic.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.genomic.gdc_realn.bam 7973855122 BAM genomic harmonized CPTAC3 f83476d4-7542-4752-b089-9d179105021c 984e55c449cfc20b19a7fd9838fad346 {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor"} -C3N-00307.RNA-Seq.S3_L005_R1.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R1_001.fastq.gz 3567074463 FASTQ S3_L005_R1 unaligned CPTAC3 669165d7-8780-4ae4-9498-fa7994b3eda2 b24b5efa03f341375298b114de336c90 {"aliquot_tag": "ALQ_325b8216", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00307.RNA-Seq.S3_L005_R2.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R2_001.fastq.gz 3830056423 FASTQ S3_L005_R2 unaligned CPTAC3 90ef718e-5752-4d8b-9543-80ebcba508cb 81c1e70ae92956e7615181cb22585652 {"aliquot_tag": "ALQ_325b8216", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00307.RNA-Seq.S8_L008_R1.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 3881941919 FASTQ S8_L008_R1 unaligned CPTAC3 a2cdc279-bef0-4d9f-82f5-9535bf50ea0b fad16843367982785caa9645db82993b {"aliquot_tag": "ALQ_f30d414d", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.RNA-Seq.S8_L008_R2.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4257254829 FASTQ S8_L008_R2 unaligned CPTAC3 65b30bc5-232e-4ac3-ab95-66e10bc6d8ed 8bd387f65eb6baf8800341c810d806ef {"aliquot_tag": "ALQ_f30d414d", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.RNA-Seq.transcriptome.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.transcriptome.gdc_realn.bam 11902820573 BAM transcriptome harmonized CPTAC3 97ea9cf1-e0c9-4ad5-8bb6-fe74e9fad586 cd432ea48a336ac82082bdc14222dcaf {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.RNA-Seq.transcriptome.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.transcriptome.gdc_realn.bam 9250526334 BAM transcriptome harmonized CPTAC3 5f370955-aa53-4fea-a6d5-11bf988419fc e4896b90ab2500eecdc877c04cfb35a7 {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor"} -C3N-00307.WGS.A C3N-00307 HNSCC WGS tissue_normal CPT0008960008 CPT0008960008.WholeGenome.RP-1303.bam 59450442968 BAM aligned CPTAC3 dc0e1aa6-be5e-4528-bfd2-1eb129d41443 55e785d0017282c13c9d0d7f2e4b4001 {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.WGS.A.hg38 C3N-00307 HNSCC WGS tissue_normal CPT0008960008 76a79796-e8d4-4f45-9412-3d346ab171de_wgs_gdc_realn.bam 86508213236 BAM harmonized CPTAC3 db760550-0155-437c-85b9-dbdd23ab008c 5a79393d9a1ca2371cf096f3e5bf49ea {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.WGS.N C3N-00307 HNSCC WGS blood_normal CPT0008970002 CPT0008970002.WholeGenome.RP-1303.bam 83735049360 BAM aligned CPTAC3 860847a9-e12b-4cfa-bb72-708c86f7acde 080800ed98857ff86a5357ff157b5517 {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00307.WGS.N.hg38 C3N-00307 HNSCC WGS blood_normal CPT0008970002 8e8a8a98-dbf5-4628-bb3e-cb0bc5eac907_gdc_realn.bam 124905417983 BAM harmonized CPTAC3 7000ec75-4eee-4e03-acf5-8fc555c3b981 cbffdda029caf63ae11c969a3b6dff39 {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00307.WGS.T C3N-00307 HNSCC WGS tumor CPT0008930006 CPT0008930006.WholeGenome.RP-1303.bam 75969346879 BAM aligned CPTAC3 d6403068-0069-4686-ac5d-423f8cdfdf1d 5ca0742b764ec3fd009f802da1b2e078 {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor"} -C3N-00307.WGS.T.hg38 C3N-00307 HNSCC WGS tumor CPT0008930006 27fa7c90-11ae-4586-85e7-fb2e269ad442_gdc_realn.bam 113657057767 BAM harmonized CPTAC3 a1d02572-a87c-45b5-bc41-c533348d7d6d b696a17183b577c57d1c107f2490214e {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor"} -C3N-00307.WXS.A C3N-00307 HNSCC WXS tissue_normal CPT0008960008 CPT0008960008.WholeExome.RP-1303.bam 31908235617 BAM aligned CPTAC3 155d6f24-7573-4166-9b64-e09279dbfb26 e9e46ef8f2b19fe4d5db32d25d18fe3c {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.WXS.A.hg38 C3N-00307 HNSCC WXS tissue_normal CPT0008960008 76a79796-e8d4-4f45-9412-3d346ab171de_wxs_gdc_realn.bam 42699579654 BAM harmonized CPTAC3 1c7ad108-6815-4ad3-ba7e-efa9d753bcbf 39effdba3f4abc6ed29ff6e3b80e13c6 {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00307.WXS.N C3N-00307 HNSCC WXS blood_normal CPT0008970002 CPT0008970002.WholeExome.RP-1303.bam 28267876770 BAM aligned CPTAC3 714528a4-00d6-45b1-b573-ddf9fa0becee 36a389fa0dad6f6ffaa3cb880e0a19d3 {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00307.WXS.N.hg38 C3N-00307 HNSCC WXS blood_normal CPT0008970002 8e8a8a98-dbf5-4628-bb3e-cb0bc5eac907_gdc_realn.bam 39374797445 BAM harmonized CPTAC3 a2032b77-f548-4478-8edc-3106067e6ec6 b9051396d09a5e26b275d83ce21a484f {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00307.WXS.T C3N-00307 HNSCC WXS tumor CPT0008930006 CPT0008930006.WholeExome.RP-1303.bam 26039962994 BAM aligned CPTAC3 0ee2f11b-c015-4219-8677-5b4e1188c9ab ee5024ab62f71dd9f10e95843e9f41ad {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor"} -C3N-00307.WXS.T.hg38 C3N-00307 HNSCC WXS tumor CPT0008930006 27fa7c90-11ae-4586-85e7-fb2e269ad442_gdc_realn.bam 35791635657 BAM harmonized CPTAC3 0336f49b-4d5b-4c2c-8a80-8ab09996d196 53b75dc2eac996b177e50e031c59eeca {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor"} -C3N-00309.MethArray.Green.T C3N-00309 LSCC Methylation_Array tumor CPT0008330006 202184990013_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7acde140-a65c-4f12-83c1-9ed068b0aaee cd126fc516cdabee537b628c8ae3a878 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor"} -C3N-00309.MethArray.Red.T C3N-00309 LSCC Methylation_Array tumor CPT0008330006 202184990013_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3277505b-61cd-482d-abba-f3927f826f53 5bdad05e93137f1d1a8ae33eff0ffa38 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor"} -C3N-00309.miRNA-Seq.S6_L003_R1.T C3N-00309 LSCC miRNA-Seq tumor CPT0008330009 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L003_R1_001.unaln.bam 256781930 BAM S6_L003_R1 unaligned CPTAC3 e29b59a2-030a-4bdb-b863-cf57d9c88a51 170544cacd266f6a8512ce0c1e8f84b3 {"aliquot_tag": "ALQ_93c0a170", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00309.miRNA-Seq.T.hg38 C3N-00309 LSCC miRNA-Seq tumor CPT0008330009 dbb776e3-937a-4a4f-adf6-bc44933391cd_mirnaseq_gdc_realn.bam 287096905 BAM harmonized CPTAC3 8f6f7edd-a9f2-4b56-9625-d4a9c8bc874e 4c70a8ec7a29c49caec648e9bf3fbbf0 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor"} -C3N-00309.RNA-Seq.chimeric.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.chimeric.gdc_realn.bam 144037730 BAM chimeric harmonized CPTAC3 57e032ae-29bb-49cd-894f-193645df068a 7187d6cd080bdaccecedbdf52642f676 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor"} -C3N-00309.RNA-Seq.genomic.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.genomic.gdc_realn.bam 10522043918 BAM genomic harmonized CPTAC3 c0a860bd-83c3-47dc-b57b-227c18c60d89 fd498d9f3462b1c38f81fb5538c56924 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor"} -C3N-00309.RNA-Seq.S19_L006_R1.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R1_001.fastq.gz 4517409389 FASTQ S19_L006_R1 unaligned CPTAC3 93a2a88a-0517-4060-8067-c82235949e9d faa938958cb956f4e8f834baa5acad33 {"aliquot_tag": "ALQ_93c0a170", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00309.RNA-Seq.S19_L006_R2.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R2_001.fastq.gz 5162929640 FASTQ S19_L006_R2 unaligned CPTAC3 9b69529e-aff0-41be-90aa-5426cc64828e 4ddbc41bc0928d0715f095ea500a98a3 {"aliquot_tag": "ALQ_93c0a170", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00309.RNA-Seq.transcriptome.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.transcriptome.gdc_realn.bam 12329223685 BAM transcriptome harmonized CPTAC3 2b021eeb-776a-4fca-a49a-e8b0be4c9903 9af27151af65240c039acef5a8be1708 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor"} -C3N-00309.WGS.N C3N-00309 LSCC WGS blood_normal CPT0008370002 CPT0008370002.WholeGenome.RP-1303.bam 77384832298 BAM aligned CPTAC3 2b7b2c26-d2e2-4345-8c7d-d00d199281c4 132ef9a2823139ff44785b3fcefc2324 {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00309.WGS.N.hg38 C3N-00309 LSCC WGS blood_normal CPT0008370002 1b3e4f90-8f81-493d-a762-5d91682aa002_gdc_realn.bam 115288393197 BAM harmonized CPTAC3 fbd36f17-35ca-4bfe-b795-2fabe3967c6f d56835e4a15352ad810ee1334a5b6b09 {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00309.WGS.T C3N-00309 LSCC WGS tumor CPT0008330006 CPT0008330006.WholeGenome.RP-1303.bam 61907696198 BAM aligned CPTAC3 74e316d0-43fd-48c8-9467-7a2b0b105b64 8e26e82ee9e4cb7fdeb28c64667c7cbd {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor"} -C3N-00309.WGS.T.hg38 C3N-00309 LSCC WGS tumor CPT0008330006 433a77b0-20ee-4b30-850e-a41642e4f30c_gdc_realn.bam 92572352153 BAM harmonized CPTAC3 8dcbc14e-ef8c-4970-bad9-7c667a6c3005 0453ecd5449b63287d0d24d72b62e844 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor"} -C3N-00309.WXS.N C3N-00309 LSCC WXS blood_normal CPT0008370002 CPT0008370002.WholeExome.RP-1303.bam 30165781771 BAM aligned CPTAC3 5ad64c4c-6bf0-423e-829e-c7efcbfdfe72 002bcd574227c6ded5a0fcf44ba690fe {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00309.WXS.N.hg38 C3N-00309 LSCC WXS blood_normal CPT0008370002 1b3e4f90-8f81-493d-a762-5d91682aa002_gdc_realn.bam 41347036650 BAM harmonized CPTAC3 6d2cdd4a-04dc-49ce-ba4a-219ffdbd7eb5 3fc5a81fcb0a9342bc55545379f0319e {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal"} -C3N-00309.WXS.T C3N-00309 LSCC WXS tumor CPT0008330006 CPT0008330006.WholeExome.RP-1303.bam 31494914458 BAM aligned CPTAC3 32230404-d5dd-40a9-a38b-e1e4d417ea26 a45f155e82588925175a98f068eedcf1 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor"} -C3N-00309.WXS.T.hg38 C3N-00309 LSCC WXS tumor CPT0008330006 433a77b0-20ee-4b30-850e-a41642e4f30c_gdc_realn.bam 43105999397 BAM harmonized CPTAC3 05b4b5aa-5c15-42ee-9553-c5eb3e0eb4f0 7c780a20cf6bbc6c90926a7eb2353e0b {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_458bb307.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0008980009 204367470131_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 10ab103c-43cc-44b2-bc99-9edac0570eae 413fdfb11de0f1220413426323a97998 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_458bb307.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0008980009 204367470131_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 2935886d-0650-4874-86e1-f122b616d882 3d294326594a71e88570efa1075d0e84 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_458bb307.WGS.T C3N-00310 CCRCC WGS tumor CPT0008980009 CPT0008980009.WholeGenome.RP-2158.bam 25391689119 BAM aligned CPTAC3 1e256f80-ac70-4ede-8a6a-22433abeeb40 66fbb18a8aaaaeb6b00c56d4f6d85874 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_458bb307.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0008980009 5959cbb5-44c4-4969-8451-73e5af3e1ec1_wgs_gdc_realn.bam 74019923289 BAM harmonized CPTAC3 162da098-c0ce-4b31-acf6-0d3998bbf8a9 69a27a634b25bcc2438f6bdcf8dd62f8 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_458bb307.WXS.T C3N-00310 CCRCC WXS tumor CPT0008980009 CPT0008980009.WholeExome.RP-1303.bam 20178068681 BAM aligned CPTAC3 193b2802-bcf0-4b48-a2ff-c39a06607d0c 47c2a51cda77d3306cf6943e293a0160 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_458bb307.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0008980009 5959cbb5-44c4-4969-8451-73e5af3e1ec1_wxs_gdc_realn.bam 27902588354 BAM harmonized CPTAC3 ecaca3ef-0aeb-4689-afb4-3765c06a1816 90ea90c79f0ac0abdded471b2408b96f {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_595c969b.miRNA-Seq.S19_L003_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0009010006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L003_R1_001.unaln.bam 349103158 BAM S19_L003_R1 unaligned CPTAC3 72910fc8-ead6-4beb-a420-50b5523e381b 66fcd407f61f0c8ffb3f126a3fc7908c {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_595c969b.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0009010006 b0577a99-b78c-4787-a0b6-aad5f34d83ce_mirnaseq_gdc_realn.bam 380825242 BAM harmonized CPTAC3 40edd04a-7a95-4e89-bf7c-5ae8208cd156 f4ebbc5146d8db0729696598735b73fe {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_595c969b.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.chimeric.gdc_realn.bam 185035877 BAM chimeric harmonized CPTAC3 7bcb728b-dfa7-4c20-8ffb-656ecf601943 6f557c7747de8ca61be94efbede9f6f3 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_595c969b.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.genomic.gdc_realn.bam 9078641847 BAM genomic harmonized CPTAC3 dd889250-2b83-4541-a791-545d2a3bf5a3 8591f27d07b946608a3332ec3b2fa750 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_595c969b.RNA-Seq.S28_L007_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R1_001.fastq.gz 4431210554 FASTQ S28_L007_R1 unaligned CPTAC3 a77fb3b9-271f-41a8-8427-63ffe6958181 a6c030d1396c966b74150a8980564716 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_595c969b.RNA-Seq.S28_L007_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R2_001.fastq.gz 5092745384 FASTQ S28_L007_R2 unaligned CPTAC3 f39809c1-4a34-4c1d-9f70-acf788723916 1b1febbf6e36dab493b758e3d3765253 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_595c969b.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.transcriptome.gdc_realn.bam 11140862560 BAM transcriptome harmonized CPTAC3 f98d57f7-68c3-47c8-857f-10110d62eca7 ab228ebc734a57902807a91ff3ed0a2b {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_78eb9ab7.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0008990009 204372030013_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d193607b-b8f4-4e12-8bed-3e0cf0dcb134 180fc14e00eafc04759771ca2e787033 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_78eb9ab7.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0008990009 204372030013_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 ce8fe390-d498-45c7-9152-278042f4d6b7 11408fc72fe40bebe2db7e921a8e6cad {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_78eb9ab7.WGS.T C3N-00310 CCRCC WGS tumor CPT0008990009 CPT0008990009.WholeGenome.RP-2158.bam 26227191772 BAM aligned CPTAC3 c56ca7fe-8883-4ea6-bcc7-d25e84dc7d1a e7cb552c6dfb1522b6e58b45a4201ed6 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_78eb9ab7.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0008990009 754c5549-1506-4ec1-9c0e-e2f4d25acf2a_wgs_gdc_realn.bam 75561481362 BAM harmonized CPTAC3 f2c679a2-1b1e-449a-ad85-7615853cb7bd f46bdc9bd5f653fceb6b4d088ad4b5f6 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_78eb9ab7.WXS.T C3N-00310 CCRCC WXS tumor CPT0008990009 CPT0008990009.WholeExome.RP-1303.bam 22017554490 BAM aligned CPTAC3 9278a2a8-1275-4b33-b04a-201bc7c1798a cbd083fa5feb673ae9351f050ab90140 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_78eb9ab7.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0008990009 754c5549-1506-4ec1-9c0e-e2f4d25acf2a_wxs_gdc_realn.bam 30988194547 BAM harmonized CPTAC3 6a9098d8-2f96-4b21-8cf9-5a2503383e20 fa3731bba841d408fb360df893366a46 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_bc456b58.miRNA-Seq.S16_L001_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0008980013 200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L001_R1_001.unaln.bam 342062318 BAM S16_L001_R1 unaligned CPTAC3 4cb2c585-25af-43a2-9208-8b8ac150529e 1bbe0711b45899d6ff802e3d3d575fe6 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_bc456b58.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0008980013 4ce7b92f-c2e4-439e-adc3-86aa0477050c_mirnaseq_gdc_realn.bam 371421517 BAM harmonized CPTAC3 652565ae-161b-4d90-8397-2fa75af2f1f6 f5c845a1a4365819bb706d8cedb02983 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_bc456b58.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.chimeric.gdc_realn.bam 166777535 BAM chimeric harmonized CPTAC3 9ed970ce-c37e-4b28-b496-7237ebf04d7b 2c61900eda42da02b4b0ce57aab9129f {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_bc456b58.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.genomic.gdc_realn.bam 6727764397 BAM genomic harmonized CPTAC3 add29852-a04d-4792-bed4-4e7dbdfa19d3 59f46084b4b38bf3237db5f582c288df {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_bc456b58.RNA-Seq.S3_L001_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 3094161507 FASTQ S3_L001_R1 unaligned CPTAC3 edbfa46e-fc7f-4c79-8a88-b98aa1c6f90b 3a32abe8b5e3d9ce921434b042e6eff8 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_bc456b58.RNA-Seq.S3_L001_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 3750254830 FASTQ S3_L001_R2 unaligned CPTAC3 7d29bd2f-9762-44ce-be42-89e29861f4ed 815fd59d0393ee5520c3507692a8e3f2 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_bc456b58.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.transcriptome.gdc_realn.bam 8661270786 BAM transcriptome harmonized CPTAC3 64c7c925-e8a9-40cf-8e60-d9550a568c28 dac8a98aa0411957fb940303d7b8f75b {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_c9e38b0a.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0009010009 204367400087_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2d04d4d1-955a-47b6-9ebb-4cf48b245427 6b2262b53c6880b2428f50ead944b70d {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_c9e38b0a.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0009010009 204367400087_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 753810b8-288c-4f1d-9303-e530b93aaf71 3f3a9fce733b2e5e4ce19ad4258fc796 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_c9e38b0a.WGS.T C3N-00310 CCRCC WGS tumor CPT0009010009 CPT0009010009.WholeGenome.RP-2158.bam 28337771142 BAM aligned CPTAC3 aa98aa7b-da08-4e23-867a-db7ec74e133c 76e0e87a311fe9eea93cac2b5264b1bc {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_c9e38b0a.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0009010009 4c295f09-4400-4a35-9a20-b370b83dc1ff_wgs_gdc_realn.bam 82070786373 BAM harmonized CPTAC3 d8a39a54-942b-459b-8707-df898e915eb6 3db7f8094a93e30a5b4cc11d8db7ddd2 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_c9e38b0a.WXS.T C3N-00310 CCRCC WXS tumor CPT0009010009 CPT0009010009.WholeExome.RP-1303.bam 16694133166 BAM aligned CPTAC3 1e14c658-b4c2-4350-9eda-510de7317568 974cfe2a48f00ce9a70d2150cc971364 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_c9e38b0a.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0009010009 4c295f09-4400-4a35-9a20-b370b83dc1ff_wxs_gdc_realn.bam 23624010897 BAM harmonized CPTAC3 1ef1d20c-8698-4e03-999d-2a34b6dce794 7b4656fccecddc60e0a6bf8d6b83ebf2 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_e8548726.miRNA-Seq.S45_L003_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0008990006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCCCGA_S45_L003_R1_001.unaln.bam 243398978 BAM S45_L003_R1 unaligned CPTAC3 f649e262-2a54-4203-b0d1-72374e1756f4 cfa197cbbe32e12788bf726ed40825c5 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_e8548726.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0008990006 5bace9e7-9920-47e2-a292-bba1cf1b6375_mirnaseq_gdc_realn.bam 269228686 BAM harmonized CPTAC3 3f9b235b-5c5a-4546-8293-1cd353f41813 9df16f9866049f4166beb607b9979632 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_e8548726.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.chimeric.gdc_realn.bam 210633815 BAM chimeric harmonized CPTAC3 b5e1928b-6934-4d2e-bcd0-316274e17c11 2bedc1d6ea2b3a955847b1305f608dd7 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_e8548726.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.genomic.gdc_realn.bam 7183184963 BAM genomic harmonized CPTAC3 c5e9172f-a471-4027-8b9b-0b4602fdc283 fd7383646b3739f36e65e4fa004c75a5 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_e8548726.RNA-Seq.S27_L007_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R1_001.fastq.gz 3466129521 FASTQ S27_L007_R1 unaligned CPTAC3 89dee074-c120-4cff-8803-2939e845e8d0 b543b4583027331f77ec4a95739520bd {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_e8548726.RNA-Seq.S27_L007_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R2_001.fastq.gz 3995206015 FASTQ S27_L007_R2 unaligned CPTAC3 e889774e-64a6-4276-9079-c53c0966c003 f99b35d25e9d649ef22f310e77ebc2f3 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00310.DUP_e8548726.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.transcriptome.gdc_realn.bam 8320888667 BAM transcriptome harmonized CPTAC3 d71a10b5-ed23-4e48-8b2b-9743d501bd01 927da712359085f122b7591328fc2253 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00310.MethArray.Green.A C3N-00310 CCRCC Methylation_Array tissue_normal CPT0009020009 204930640122_R02C01_Grn.idat 13677965 IDAT Green NA CPTAC3 4a425854-307f-4541-bb58-baeb3eda394f c8b9c37a4c97025491c195301520577f {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0009000006 202176290105_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0fb9866f-3bfa-4c39-a558-a5bf591ff86f ba010e8f38afef39fb15c7ddba549678 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor"} -C3N-00310.MethArray.Red.A C3N-00310 CCRCC Methylation_Array tissue_normal CPT0009020009 204930640122_R02C01_Red.idat 13677965 IDAT Red NA CPTAC3 47e9f062-e458-4654-8fc2-a426138c59c3 f8d5c4a7ea51440abedb92ec50c632a2 {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0009000006 202176290105_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 dbce0208-667c-4dd7-9877-c1be02f0af3e a4798679ef5b5164f3a4234e9bf2abc3 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor"} -C3N-00310.miRNA-Seq.A.hg38 C3N-00310 CCRCC miRNA-Seq tissue_normal CPT0009020006 0db970d2-e74d-489a-81f1-acf5c6581772_mirnaseq_gdc_realn.bam 182742186 BAM harmonized CPTAC3 3ddb56db-795f-48ee-87df-d849656f0cf4 ec10736bafa7db0ecd91c41eb1ae1af3 {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.miRNA-Seq.S14_L003_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0009000009 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L003_R1_001.unaln.bam 219903758 BAM S14_L003_R1 unaligned CPTAC3 58246253-8553-4073-a559-e166e362ae75 3c25883c86a9daee397f85f0fb3c14ec {"aliquot_tag": "ALQ_f483a2ba", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.miRNA-Seq.S36_L004_R1.A C3N-00310 CCRCC miRNA-Seq tissue_normal CPT0009020006 181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L004_R1_001.unaln.bam 164839957 BAM S36_L004_R1 unaligned CPTAC3 69613f20-8f09-4980-8725-0bd6dca12361 7fd4bc05c996a45b80212050186a983f {"aliquot_tag": "ALQ_1efcec4b", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0009000009 0773eaae-dfd3-4ec4-a031-09bdcffe3e23_mirnaseq_gdc_realn.bam 240649743 BAM harmonized CPTAC3 ef200408-1b00-4cee-89ff-9d584fb5f07c 58e2114ebf58f2dc9df2f1729dfca857 {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor"} -C3N-00310.RNA-Seq.chimeric.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.chimeric.gdc_realn.bam 83034842 BAM chimeric harmonized CPTAC3 1c7f97f6-2243-4569-bd58-d24e121f2e7f 12547b0431d225bf2f0e7e829c128e20 {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.chimeric.gdc_realn.bam 114348129 BAM chimeric harmonized CPTAC3 f151179b-9e99-4bf3-b97f-463cae38d70a e7f6ac929340f8e103e286064bdb5152 {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor"} -C3N-00310.RNA-Seq.genomic.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.genomic.gdc_realn.bam 8710463686 BAM genomic harmonized CPTAC3 828b4ebe-de28-4291-a87c-caece1022dd2 5e548440d42a625d83309056939646bb {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.genomic.gdc_realn.bam 8276113536 BAM genomic harmonized CPTAC3 89261b2e-41ce-4c58-9846-c8b9bd7c5eb5 abc1ba9265bfaf4ca2c00fc89d28974c {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor"} -C3N-00310.RNA-Seq.S47_L005_R1.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R1_001.fastq.gz 4000290124 FASTQ S47_L005_R1 unaligned CPTAC3 1fb79f60-316b-4f6b-a76e-7e5656251b23 73340743efc002a10fad520dd6733e81 {"aliquot_tag": "ALQ_1efcec4b", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.RNA-Seq.S47_L005_R2.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R2_001.fastq.gz 4199768745 FASTQ S47_L005_R2 unaligned CPTAC3 947345b1-e728-46f6-90aa-523c8d93319c bd359ef86682e56b99f7baefd1eee774 {"aliquot_tag": "ALQ_1efcec4b", "sample": "S47", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.RNA-Seq.S8_L005_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R1_001.fastq.gz 3879277533 FASTQ S8_L005_R1 unaligned CPTAC3 600887e4-6350-43bd-88d8-18fde761b376 f668ebdea6ca99405d03a356ba606b9f {"aliquot_tag": "ALQ_f483a2ba", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00310.RNA-Seq.S8_L005_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R2_001.fastq.gz 4190573018 FASTQ S8_L005_R2 unaligned CPTAC3 76ada607-cb88-45df-9f9d-081d65b4fd98 f6937bd25f36e932aa705fea542f7610 {"aliquot_tag": "ALQ_f483a2ba", "sample": "S8", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00310.RNA-Seq.transcriptome.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.transcriptome.gdc_realn.bam 9386579310 BAM transcriptome harmonized CPTAC3 6698a504-54b7-4ceb-937f-78362aaaa3d8 f0eead221efd9f4d346a95435eb993a3 {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.transcriptome.gdc_realn.bam 12087048501 BAM transcriptome harmonized CPTAC3 bbda8381-fb47-476e-9b02-597728c18741 4acc35f844d9339d58bd9578ed0fe8e7 {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor"} -C3N-00310.WGS.A C3N-00310 CCRCC WGS tissue_normal CPT0009020009 CPT0009020009.WholeGenome.RP-1303.bam 56370255974 BAM aligned CPTAC3 278af3f5-738a-455b-88ce-35198b2c2bd3 e25180a6a764eec4efab64bf8bf0b794 {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.WGS.A.hg38 C3N-00310 CCRCC WGS tissue_normal CPT0009020009 ebba4dd0-7cf4-4b4f-9886-bb48ade6b588_wgs_gdc_realn.bam 83264264292 BAM harmonized CPTAC3 d35a6db6-a200-4083-af00-30b1de25d491 9012ebcb47845234722531c064f3f620 {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.WGS.N C3N-00310 CCRCC WGS blood_normal CPT0009030002 CPT0009030002.WholeGenome.RP-1303.bam 73026168543 BAM aligned CPTAC3 807cccc0-fd2b-4ac9-b206-edda79a74329 c5fc8340f639d9e1c4f69bcb17575e58 {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00310.WGS.N.hg38 C3N-00310 CCRCC WGS blood_normal CPT0009030002 46d15fa0-e832-47c8-a5ba-a1caca39b8ad_gdc_realn.bam 106783168790 BAM harmonized CPTAC3 2df558b7-8ba4-4409-944d-239833b51a3d bb842351bd5f2ff57fd376c34f362bc3 {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00310.WGS.T C3N-00310 CCRCC WGS tumor CPT0009000006 CPT0009000006.WholeGenome.RP-1303.bam 53952100630 BAM aligned CPTAC3 c03bddc2-6995-4ec9-b9f2-f9eb3fee4b56 b20a9911d6d38ceb74ef3383873f53b6 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor"} -C3N-00310.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0009000006 7f7054b1-e9ef-4275-af89-9926f65014f8_gdc_realn.bam 77669044027 BAM harmonized CPTAC3 cbd72e8b-44d3-4463-9f99-f048254fda5c 545447c2b6ff93b959adfde91b41d3f5 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor"} -C3N-00310.WXS.A C3N-00310 CCRCC WXS tissue_normal CPT0009020009 CPT0009020009.WholeExome.RP-1303.bam 34829747771 BAM aligned CPTAC3 b727208f-6a94-497b-8fe9-675bf1ff141e d588fc56438b955800dfe4816ec357ef {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.WXS.A.hg38 C3N-00310 CCRCC WXS tissue_normal CPT0009020009 ebba4dd0-7cf4-4b4f-9886-bb48ade6b588_wxs_gdc_realn.bam 47741770301 BAM harmonized CPTAC3 acc3d8e4-8a01-42ed-b06a-8e76cff2eb7d 731dccde2f410a5a85989f230451309b {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00310.WXS.N C3N-00310 CCRCC WXS blood_normal CPT0009030002 CPT0009030002.WholeExome.RP-1303.bam 25162838991 BAM aligned CPTAC3 3adc0ffd-0717-4d60-81ec-978bcab16d87 c92f8e18a4f98e19f9e3caac5174eecb {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00310.WXS.N.hg38 C3N-00310 CCRCC WXS blood_normal CPT0009030002 46d15fa0-e832-47c8-a5ba-a1caca39b8ad_gdc_realn.bam 34014493164 BAM harmonized CPTAC3 3c0d4139-3d67-4100-b190-ac5c97bc946a ac9cf2063ec66e20a51ccea6ad6601a6 {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00310.WXS.T C3N-00310 CCRCC WXS tumor CPT0009000006 CPT0009000006.WholeExome.RP-1303.bam 30451564623 BAM aligned CPTAC3 fc577c64-b332-4a29-ad71-6b1277ca3597 a2bc6892d4b4d062d6723b14ad44057e {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor"} -C3N-00310.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0009000006 7f7054b1-e9ef-4275-af89-9926f65014f8_gdc_realn.bam 41036873499 BAM harmonized CPTAC3 331e5643-c098-412e-9f29-0ed4671fec5a 91c530ff89e75c518a36de684f284600 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_103047a.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009040009 204367490090_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 52188731-67b0-4405-a0e8-5001576d41bc 4b06e2d56253f3a59befcd35bcd6be44 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_103047a.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009040009 204367490090_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 543cf62d-362e-4395-a383-c4253971eb2d 8d9e3ac717fb1aaf98df48af00a3c959 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_103047a.WGS.T C3N-00312 CCRCC WGS tumor CPT0009040009 CPT0009040009.WholeGenome.RP-2158.bam 28780050950 BAM aligned CPTAC3 6972d4f2-49f9-493d-846d-c5934f6aed6b 0de4fc8a1c7fa468e995bff185e45678 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_103047a.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009040009 ac12c913-71a6-4af2-9340-7b5c1b64bb55_wgs_gdc_realn.bam 83677823890 BAM harmonized CPTAC3 b843b329-9fdf-4920-804a-47bc90fbb20a 118e288001bebddd19c074ae70248ef7 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_103047a.WXS.T C3N-00312 CCRCC WXS tumor CPT0009040009 CPT0009040009.WholeExome.RP-1303.bam 17837253418 BAM aligned CPTAC3 3436fb1f-fb2e-4330-8d77-2c3bf5c12e31 d4a74ac71dab0b98c81381a9450e728e {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_103047a.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009040009 ac12c913-71a6-4af2-9340-7b5c1b64bb55_wxs_gdc_realn.bam 24280374294 BAM harmonized CPTAC3 832bdcc8-b171-4eb2-971a-d4dd2fb3f500 d3f7d3481259c5bbab0840aef08df640 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_3c632dca.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009050009 204367490030_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dca3c811-fa4e-4e2f-955c-a60a4cabadf1 83b553493e1ae3fbfe09514a93ce3983 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_3c632dca.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009050009 204367490030_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 ced49832-886c-4cef-89f7-61a15f1bd27a 37670094580f2cf2bc4f5f238de55678 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_3c632dca.WGS.T C3N-00312 CCRCC WGS tumor CPT0009050009 CPT0009050009.WholeGenome.RP-2158.bam 21489888417 BAM aligned CPTAC3 242417c2-421b-45b5-aa55-be6b4f34a5cd 2e418d77cf7e8cde9ecf92e88c7c66d1 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_3c632dca.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009050009 c6c421fa-2669-4299-9d03-fc8f023dd813_wgs_gdc_realn.bam 62748608564 BAM harmonized CPTAC3 1baaf74c-11e5-4da2-b768-b95d8aeebc62 03cc0a1acfc1578327e954b5069302a5 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_3c632dca.WXS.T C3N-00312 CCRCC WXS tumor CPT0009050009 CPT0009050009.WholeExome.RP-1303.bam 20117508241 BAM aligned CPTAC3 3cad3f2c-e19b-4dd8-b6b1-84e39dc24362 486b965ea5b30ad1639b8ed8ec4b3da8 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_3c632dca.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009050009 c6c421fa-2669-4299-9d03-fc8f023dd813_wxs_gdc_realn.bam 28177333319 BAM harmonized CPTAC3 45f5e8b0-7e55-4a10-aee2-3a40fce0bcc4 dca4582229378d5e3e6bb8d3b2c52149 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_46a37eaa.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009070009 204372030074_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f17b27ca-76a6-4555-a890-fc216df9d8e9 7cd932daa96d7de2c799f0cdcc38874a {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_46a37eaa.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009070009 204372030074_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 5e0ead7a-1343-4f2a-b6f5-cfd71886ee68 37447fc1e59bf1116581b9d0821146af {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_46a37eaa.WGS.T C3N-00312 CCRCC WGS tumor CPT0009070009 CPT0009070009.WholeGenome.RP-2158.bam 30395980652 BAM aligned CPTAC3 faf73648-0822-4297-96d9-3de62c164e99 8d4f6d73483fa8c26d0688de9f71ee02 {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_46a37eaa.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009070009 9e2cd80f-546f-47a7-9724-9fca5eb1b672_wgs_gdc_realn.bam 87822858220 BAM harmonized CPTAC3 10c34d19-af57-43a7-8c06-a3b9022a2e6b f7f6a75e3f6c9849454f8f84efe55131 {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_46a37eaa.WXS.T C3N-00312 CCRCC WXS tumor CPT0009070009 CPT0009070009.WholeExome.RP-1303.bam 26896315528 BAM aligned CPTAC3 113736a3-5f5c-4928-912d-ef13aba2933e 58afffe17ddc76d09d192cb611c3c04d {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_46a37eaa.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009070009 9e2cd80f-546f-47a7-9724-9fca5eb1b672_wxs_gdc_realn.bam 35727364045 BAM harmonized CPTAC3 3481b6f5-8bfa-4941-95d7-6503abc5c4bf 0e98f241a40db240450e8d504a24f27b {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_91bc19eb.miRNA-Seq.S20_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009040006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L003_R1_001.unaln.bam 282391239 BAM S20_L003_R1 unaligned CPTAC3 bbc3a36a-316c-45b6-8251-476e111cefd3 c6e527a026b862311026915e9a095405 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_91bc19eb.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009040006 06467550-def2-403d-9aa3-7a3a34f02dde_mirnaseq_gdc_realn.bam 307826790 BAM harmonized CPTAC3 83c105f2-09e8-4cc4-84c8-6dda3fb29b10 ba6de599dfe0f674ff37342243ffcda5 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_91bc19eb.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.chimeric.gdc_realn.bam 149053172 BAM chimeric harmonized CPTAC3 6157ba96-fd01-4a8d-a365-b8d645960ab9 833a11d8beb28b63f31b8159610673e6 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_91bc19eb.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.genomic.gdc_realn.bam 8892050908 BAM genomic harmonized CPTAC3 39e65a7b-3c72-4ea9-a9d0-8bc00732baca 41cfacc16dfe8121dc865940ffe3b010 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_91bc19eb.RNA-Seq.S25_L007_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R1_001.fastq.gz 4289173913 FASTQ S25_L007_R1 unaligned CPTAC3 d070b7e8-b692-4b38-a0c0-18d789197848 a0fcd2011ae7998b6f9038df384118b7 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_91bc19eb.RNA-Seq.S25_L007_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R2_001.fastq.gz 5129448695 FASTQ S25_L007_R2 unaligned CPTAC3 11e4bcb1-1181-41c9-b4c6-3770f2c0e93e 284493faaedaff218c37bd184482f5c5 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_91bc19eb.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.transcriptome.gdc_realn.bam 11204889135 BAM transcriptome harmonized CPTAC3 c3fd8ea0-42b2-4a20-91c7-db9c750fbf78 8660e3e1f9a1f31e0b7a2ab940d5ebf0 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_acdc305b.miRNA-Seq.S39_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009050006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATCACG_S39_L003_R1_001.unaln.bam 179291781 BAM S39_L003_R1 unaligned CPTAC3 f0adc4d0-a1f3-4619-9fac-b9e1b4e77899 af2760d17ac8bd8d57b7b59c9f7f169c {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_acdc305b.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009050006 5eb8e0e9-113e-4c3b-a377-23a3d4f2b9f1_mirnaseq_gdc_realn.bam 197189293 BAM harmonized CPTAC3 d4009a80-f39a-482e-a5dd-7cf139b6f87d 6a067f96334ec84489c35cc9da8cb9dc {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_acdc305b.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.chimeric.gdc_realn.bam 38526134 BAM chimeric harmonized CPTAC3 e84e285b-a8ef-4768-8e9f-5e41ee60951e 2253cc464c5ad25648a7249b79ee9e79 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_acdc305b.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.genomic.gdc_realn.bam 8653829028 BAM genomic harmonized CPTAC3 35de06b6-e159-4c37-8e74-b6dcc208b233 b8d9be94e11a72e264a94af3fe189cae {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_acdc305b.RNA-Seq.S30_L008_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R1_001.fastq.gz 4216064401 FASTQ S30_L008_R1 unaligned CPTAC3 84b165b3-e4c3-40a6-a2b2-be3eb9d6a968 6b5bc4b4e1bed0c28fa65d344cc277a8 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_acdc305b.RNA-Seq.S30_L008_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R2_001.fastq.gz 4835120977 FASTQ S30_L008_R2 unaligned CPTAC3 03a57298-110d-45a0-b3ab-d86ab4b11fc5 6fceb331c67c31871e07503b5ead06b4 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_acdc305b.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.transcriptome.gdc_realn.bam 11379932007 BAM transcriptome harmonized CPTAC3 1b2354b5-ad22-4da5-b48b-fcaf04a85ad2 a8677afff03282a46ee0fbe11353edc4 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_d61c633b.miRNA-Seq.S47_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009070006 200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L003_R1_001.unaln.bam 238687856 BAM S47_L003_R1 unaligned CPTAC3 68f4c186-2b34-4e5a-9aa5-eff96f1d2a6a 15d5f981909a5b9f5716b6f73c785cc5 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_d61c633b.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009070006 a21e894a-5524-4657-bfd3-bdfae8c7c46b_mirnaseq_gdc_realn.bam 259906942 BAM harmonized CPTAC3 fdc1c5a9-b39b-4e9a-a4bb-c6d37a4b9c06 6242e9ec6b0f1074534d853dcd9ade09 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_d61c633b.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.chimeric.gdc_realn.bam 53048031 BAM chimeric harmonized CPTAC3 b3de330c-7c22-4e02-ac9b-2d52fee8bb7e d471a41aab8e1fc92aa1f3cc0e8c3940 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_d61c633b.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.genomic.gdc_realn.bam 8264769099 BAM genomic harmonized CPTAC3 c9dd9ba9-0209-4765-a76f-76fd8fd049e0 e3de49e1cfed9bc8e333c585d6519583 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_d61c633b.RNA-Seq.S29_L008_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R1_001.fastq.gz 4094831538 FASTQ S29_L008_R1 unaligned CPTAC3 df7a710b-9006-452d-a356-5300dff4bb75 e51a87b1f0b4c4946f032fbd3fd2e697 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_d61c633b.RNA-Seq.S29_L008_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R2_001.fastq.gz 4648781248 FASTQ S29_L008_R2 unaligned CPTAC3 ef8985af-993b-4c92-8651-d8e0102c4605 bd9d0f46976d283aec123ab1382fd6ab {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00312.DUP_d61c633b.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.transcriptome.gdc_realn.bam 11193751888 BAM transcriptome harmonized CPTAC3 74e7fb19-cfed-491c-9227-a29720c807c2 8de698590b65a62d44709913a71bef73 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00312.MethArray.Green.A C3N-00312 CCRCC Methylation_Array tissue_normal CPT0009080009 204930640023_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 5c8fed49-1977-42f3-bb50-29dcf039e1f4 285aa49a14a101ab3e30c3303fd7c3cd {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00312.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009060006 202184990057_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 03a40d78-0a3b-421a-8fd9-1074982d5f1e 99d05e9eaaf254d2118a4273106b74bd {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor"} -C3N-00312.MethArray.Red.A C3N-00312 CCRCC Methylation_Array tissue_normal CPT0009080009 204930640023_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 c7c4ab84-02ac-4c65-ade4-5b3d21ce449d 8845b08558b45d264e51291edc4ee2d9 {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00312.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009060006 202184990057_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b10a6b5-4970-4349-8a42-8bed4a4adc10 ecb73105fd337ed18c25ab23584e48f7 {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor"} -C3N-00312.miRNA-Seq.S16_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009060009 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L003_R1_001.unaln.bam 229803384 BAM S16_L003_R1 unaligned CPTAC3 d34d878b-0f51-4821-bff7-f3bd9780eeaa e0e76950cf40ed51957b00131f5359ac {"aliquot_tag": "ALQ_7bc3571a", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009060009 68ebfe5b-e4b9-4a70-92f1-3a2a455e3934_mirnaseq_gdc_realn.bam 246278840 BAM harmonized CPTAC3 d9233492-ff75-4528-8ddc-1ac40197b297 76336c85f8e2f61407fc7c986cc93877 {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor"} -C3N-00312.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.chimeric.gdc_realn.bam 187175014 BAM chimeric harmonized CPTAC3 b3f83a8d-09d4-4d3f-8716-a531837f2096 85b9474c81d1ea6ed482480684ddad21 {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor"} -C3N-00312.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.genomic.gdc_realn.bam 8850515841 BAM genomic harmonized CPTAC3 667fdb3c-a487-47da-820f-959c71652c66 c10c2e0a2d45eb624b88307c5f5b1eea {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor"} -C3N-00312.RNA-Seq.S10_L005_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R1_001.fastq.gz 4379179377 FASTQ S10_L005_R1 unaligned CPTAC3 b6017636-1179-4a19-976d-8a4ff24a550d 74b849adc1ede7c4b4893a8070a2f950 {"aliquot_tag": "ALQ_7bc3571a", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00312.RNA-Seq.S10_L005_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R2_001.fastq.gz 4745246185 FASTQ S10_L005_R2 unaligned CPTAC3 73499178-bbb1-43cf-969b-120c4503f709 aeddc28d905945417f212f866a04e012 {"aliquot_tag": "ALQ_7bc3571a", "sample": "S10", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00312.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.transcriptome.gdc_realn.bam 11227723582 BAM transcriptome harmonized CPTAC3 da9a1c91-be98-466f-96e1-1f1de2055d82 05d5ba704219afdec90c500776deb5a4 {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor"} -C3N-00312.WGS.A C3N-00312 CCRCC WGS tissue_normal CPT0009080009 CPT0009080009.WholeGenome.RP-1303.bam 57491964931 BAM aligned CPTAC3 bb6f3c20-02f3-4b65-8a1d-af8ebb69653d a790efb65d4a803e5c5a323098dfea3a {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00312.WGS.A.hg38 C3N-00312 CCRCC WGS tissue_normal CPT0009080009 c2ccc81a-f952-4d49-bfa9-81f43c97a55b_wgs_gdc_realn.bam 84005456632 BAM harmonized CPTAC3 4fc6bb78-163a-4d98-939e-a881515a7141 b051cd91271fef7cbad2848d687c7bcf {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00312.WGS.N C3N-00312 CCRCC WGS blood_normal CPT0009090002 CPT0009090002.WholeGenome.RP-1303.bam 75795064521 BAM aligned CPTAC3 1b90b59a-e549-4969-a52c-7c36ea7a78b8 26f419db9c90c158f85b0524a6d5b412 {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal"} -C3N-00312.WGS.N.hg38 C3N-00312 CCRCC WGS blood_normal CPT0009090002 b502fe65-a50d-45c9-9c87-c57c81394f30_gdc_realn.bam 111197998280 BAM harmonized CPTAC3 3c6976b4-77d3-4ac6-973e-877e47e04751 1d8c7ffa2dc08f55fa391efb6aabc116 {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal"} -C3N-00312.WGS.T C3N-00312 CCRCC WGS tumor CPT0009060006 CPT0009060006.WholeGenome.RP-1303.bam 63668836437 BAM aligned CPTAC3 2a5a4906-5780-48bd-bbf1-17110a10c377 b7d6916678cdcc8a7745c9f2ae4f911d {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor"} -C3N-00312.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009060006 74487670-deb3-44f1-aaa3-d8a7b82d7290_gdc_realn.bam 92498432143 BAM harmonized CPTAC3 92029368-0c43-4491-ab8e-9ab163e243dc 4e02fcef8153b5c37920eb4747534fe3 {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor"} -C3N-00312.WXS.A C3N-00312 CCRCC WXS tissue_normal CPT0009080009 CPT0009080009.WholeExome.RP-1303.bam 33262592561 BAM aligned CPTAC3 394eac00-cf4e-4abd-9494-5a943d8da899 446f48ff1034b9220315649cfd76b8ed {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00312.WXS.A.hg38 C3N-00312 CCRCC WXS tissue_normal CPT0009080009 c2ccc81a-f952-4d49-bfa9-81f43c97a55b_wxs_gdc_realn.bam 44731506826 BAM harmonized CPTAC3 864c3194-6c89-45af-a121-a4df4618a708 74ebdb1fc359c1f1cf04daaf786231e6 {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00312.WXS.N C3N-00312 CCRCC WXS blood_normal CPT0009090002 CPT0009090002.WholeExome.RP-1303.bam 25351330957 BAM aligned CPTAC3 560922b1-d466-414d-86b5-e0676e0f7fe7 4d8742e4f3054cf53764129c69f41371 {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal"} -C3N-00312.WXS.N.hg38 C3N-00312 CCRCC WXS blood_normal CPT0009090002 b502fe65-a50d-45c9-9c87-c57c81394f30_gdc_realn.bam 34531912142 BAM harmonized CPTAC3 aeeaa154-4a21-4e54-b88a-e6e9117aaf99 cf292d35b5648b91d358608041feb0ca {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal"} -C3N-00312.WXS.T C3N-00312 CCRCC WXS tumor CPT0009060006 CPT0009060006.WholeExome.RP-1303.bam 19543443251 BAM aligned CPTAC3 e4c75fc4-8601-40ff-ae2c-823306e7e334 fe435adc6659a26f06643c2a26937227 {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor"} -C3N-00312.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009060006 74487670-deb3-44f1-aaa3-d8a7b82d7290_gdc_realn.bam 26465918875 BAM harmonized CPTAC3 ea179973-3472-4360-9eb1-e59eae58ffd3 f39784879bc03571c4781739bd012ccf {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor"} -C3N-00313.MethArray.Green.T C3N-00313 CCRCC Methylation_Array tumor CPT0011410009 202184900127_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 d448c5ad-6dce-4cc6-891b-f47055c470bc 74f671e34cf4ad533b6a716328c43e49 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor"} -C3N-00313.MethArray.Red.T C3N-00313 CCRCC Methylation_Array tumor CPT0011410009 202184900127_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 04277bdb-8244-477b-8182-fcea33d259c7 c823e9953670d1af53b6b38eab94b92a {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor"} -C3N-00313.miRNA-Seq.S22_L001_R1.T C3N-00313 CCRCC miRNA-Seq tumor CPT0011410006 180924_UNC31-K00269_0154_AHWTMLBBXX_TGACCA_S22_L001_R1_001.unaln.bam 217518871 BAM S22_L001_R1 unaligned CPTAC3 bb664030-e25d-401e-8697-9ab53d056a61 ca5e8558ca40cf916bb5f42793bed611 {"aliquot_tag": "ALQ_3d889a74", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00313.miRNA-Seq.T.hg38 C3N-00313 CCRCC miRNA-Seq tumor CPT0011410006 aa0a94e0-5a77-472a-b7ce-03d14824b8f2_mirnaseq_gdc_realn.bam 237206126 BAM harmonized CPTAC3 c2d6725c-96ba-4e68-a5f6-0778d173ad2b 47f839b127e33935fb9d5d1d11918f47 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor"} -C3N-00313.RNA-Seq.chimeric.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.chimeric.gdc_realn.bam 58296975 BAM chimeric harmonized CPTAC3 526030a8-27e8-41bd-9281-25890123a8e1 ac8f112be829726906d51b8b4ed2ad59 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor"} -C3N-00313.RNA-Seq.genomic.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.genomic.gdc_realn.bam 6935536095 BAM genomic harmonized CPTAC3 27ebcdee-4b37-4369-aa3f-5d18d03b40e6 3aa62784a48b3037aebbcc360250ad59 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor"} -C3N-00313.RNA-Seq.S1_L001_R1.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R1_001.fastq.gz 3321955238 FASTQ S1_L001_R1 unaligned CPTAC3 888407ac-0be1-41a3-a05f-b76beba5d59c b74d3b8cfa08017f50926410168ee771 {"aliquot_tag": "ALQ_3d889a74", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00313.RNA-Seq.S1_L001_R2.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R2_001.fastq.gz 3621783704 FASTQ S1_L001_R2 unaligned CPTAC3 d0634734-0ce4-431a-8003-94d6f61fcc26 be7e692adf38018569f8851cc52e961c {"aliquot_tag": "ALQ_3d889a74", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00313.RNA-Seq.transcriptome.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.transcriptome.gdc_realn.bam 8553107440 BAM transcriptome harmonized CPTAC3 2f4671c8-dbe7-4d8b-b80a-5513fe564415 ed0f37679e4dcc50298987c31ebd8667 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor"} -C3N-00313.WGS.N C3N-00313 CCRCC WGS blood_normal CPT0012040002 CPT0012040002.WholeGenome.RP-1303.bam 61278918380 BAM aligned CPTAC3 71572d05-76e3-400a-829e-8c525cb9b272 6d904bbe542d67a82d834ae88a614a4e {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal"} -C3N-00313.WGS.N.hg38 C3N-00313 CCRCC WGS blood_normal CPT0012040002 630eaa51-5b9c-4f0e-82c7-2494669109ad_gdc_realn.bam 86581602388 BAM harmonized CPTAC3 965262a1-98a2-4d8b-b9a2-f4267c2a9355 668d152a4f539a91f44b30173f24ac20 {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal"} -C3N-00313.WGS.T C3N-00313 CCRCC WGS tumor CPT0011410009 CPT0011410009.WholeGenome.RP-1303.bam 71440766520 BAM aligned CPTAC3 f7df522c-9611-4fde-9672-26bdf8abdecd a69ad7ee439a35e68232ea944a601d00 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor"} -C3N-00313.WGS.T.hg38 C3N-00313 CCRCC WGS tumor CPT0011410009 cd7a208e-7acf-4a1b-8e35-b4a5c726ab4a_gdc_realn.bam 104834986234 BAM harmonized CPTAC3 c522dddc-d560-4396-bdd0-ffe7b53fdae1 0578f1d7eed9ff38dc4e0f9350c20af5 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor"} -C3N-00313.WXS.N C3N-00313 CCRCC WXS blood_normal CPT0012040002 CPT0012040002.WholeExome.RP-1303.bam 23268469112 BAM aligned CPTAC3 2694f1f5-3894-4455-890a-4fda5a4f96d1 98a17b31c592bf83464e24f9c8ad6299 {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal"} -C3N-00313.WXS.N.hg38 C3N-00313 CCRCC WXS blood_normal CPT0012040002 630eaa51-5b9c-4f0e-82c7-2494669109ad_gdc_realn.bam 31867438668 BAM harmonized CPTAC3 382284ba-b429-42fc-ae04-0e5633278996 1d772b32131e26988d25b3bb14fcdf19 {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal"} -C3N-00313.WXS.T C3N-00313 CCRCC WXS tumor CPT0011410009 CPT0011410009.WholeExome.RP-1303.bam 22967043940 BAM aligned CPTAC3 310f956c-9bd0-4570-bd87-d11163df6556 456934ccba5c8244923b3c2d92fa31cf {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor"} -C3N-00313.WXS.T.hg38 C3N-00313 CCRCC WXS tumor CPT0011410009 cd7a208e-7acf-4a1b-8e35-b4a5c726ab4a_gdc_realn.bam 31517312842 BAM harmonized CPTAC3 15118886-6fb8-4af7-b05b-b1005fbee322 66c89bd88b0d594ad41a4592adca0968 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_1aa061e.miRNA-Seq.S29_L002_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012070016 200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L002_R1_001.unaln.bam 276790761 BAM S29_L002_R1 unaligned CPTAC3 0447b26b-9012-463b-b112-7849fb478c36 ed8959f3b163ec4fbbda148bca276862 {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_1aa061e.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012070016 8a1fe468-f020-4eb3-9587-e3c1febef7d4_mirnaseq_gdc_realn.bam 302244831 BAM harmonized CPTAC3 c046f722-7b91-44b6-872c-f056ebade73a db8353bfdc11ce58a243fc32448372ed {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_1aa061e.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.chimeric.gdc_realn.bam 80445759 BAM chimeric harmonized CPTAC3 e5d3a432-25be-4258-b99b-5e70c6e955d9 9ff4550b8c4b7f3950688ea25e4efb63 {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_1aa061e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.genomic.gdc_realn.bam 8221215602 BAM genomic harmonized CPTAC3 84428c0a-ad5d-42ba-be3b-642dec13e29d b5a97823d449b9df25ac2d48f323b92e {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_1aa061e.RNA-Seq.S18_L005_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 3676262046 FASTQ S18_L005_R1 unaligned CPTAC3 56c717c7-89d0-4cd8-a638-13cf9d2bbbf9 20f7a8f41f85707839764aeb019f0a0a {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_1aa061e.RNA-Seq.S18_L005_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4386649159 FASTQ S18_L005_R2 unaligned CPTAC3 585db18c-cf35-4df6-a337-bd5b93acd691 0d240c9db42eec4e9952672bd874e69b {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_1aa061e.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.transcriptome.gdc_realn.bam 8871692125 BAM transcriptome harmonized CPTAC3 bf4d0054-5687-42dd-b494-5078f19a51aa 22f511bd946cbb370f0e787a6f4890be {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_3ba7ebb7.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012060012 204372030014_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 016a3f0a-e25b-46f2-a4ee-e11437fff544 09cfaf4f0cb4f7cb91f7d82b65d7461b {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_3ba7ebb7.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012060012 204372030014_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 7a55380e-03d8-4c7f-ba72-d04075453e71 248f0a55ae275dca59a37464ee22a4bf {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_3ba7ebb7.WGS.T C3N-00314 CCRCC WGS tumor CPT0012060012 CPT0012060012.WholeGenome.RP-2158.bam 20983152407 BAM aligned CPTAC3 70930a9b-f91a-4e34-ac4a-e049dfc51d73 0a068ed7ffa296b036bbbfd74eeebb75 {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_3ba7ebb7.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012060012 2d8ad3b1-9758-4bc7-b2a2-fd8a9550ca16_wgs_gdc_realn.bam 61992282602 BAM harmonized CPTAC3 57d4b830-9f35-4867-9a75-56e57a981b63 1e00b17c37ab7bd67e4e5519c9ec3ace {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_3ba7ebb7.WXS.T C3N-00314 CCRCC WXS tumor CPT0012060012 CPT0012060012.WholeExome.RP-1303.bam 19612326488 BAM aligned CPTAC3 d7455846-ff2c-4a9e-9a1e-2fd4a57fa4f1 e336758aa2202151bd61fa53981a1d52 {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_3ba7ebb7.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012060012 2d8ad3b1-9758-4bc7-b2a2-fd8a9550ca16_wxs_gdc_realn.bam 26588707002 BAM harmonized CPTAC3 cd1eab3a-b5e5-4c4c-a858-4f1d011ff347 baab2fed92d382a21932359283fa72db {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_9fce93bd.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012070011 204930630086_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 67aa0d5a-fbac-42c3-8893-c21061ce9274 daf3174507c85c8cddd13db522218b6d {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_9fce93bd.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012070011 204930630086_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 5ac39506-d764-4738-a660-7a35af498162 9c76b4df7e3c66b054e8583cff4673d1 {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_9fce93bd.WGS.T C3N-00314 CCRCC WGS tumor CPT0012070011 CPT0012070011.WholeGenome.RP-2158.bam 23125514641 BAM aligned CPTAC3 ce29a452-97f2-4625-bdad-a7b490dc50ae 28ac003e8f960663e2f3574deb7ea2af {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_9fce93bd.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012070011 e684014d-b553-455b-9c6d-9a845e2913d0_wgs_gdc_realn.bam 68197260527 BAM harmonized CPTAC3 5efbadc0-c7b7-4721-aec7-f25e03b1f251 c1624c052482b1d4f297090ccc217a6b {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_9fce93bd.WXS.T C3N-00314 CCRCC WXS tumor CPT0012070011 CPT0012070011.WholeExome.RP-1303.bam 24857399548 BAM aligned CPTAC3 7c95044c-e391-48db-bdd2-b62452f4663c b593d6fb5ffeda83a820ad87c5f477a1 {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_9fce93bd.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012070011 e684014d-b553-455b-9c6d-9a845e2913d0_wxs_gdc_realn.bam 34624281535 BAM harmonized CPTAC3 f9ba5fc6-0805-4505-b151-54ce3b3d53c9 210df19855b3f7d5d256bd4438f6cc51 {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_b56e037e.miRNA-Seq.S41_L005_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012060009 200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L005_R1_001.unaln.bam 245374097 BAM S41_L005_R1 unaligned CPTAC3 8369d9f5-5d8a-4267-8ead-eec2a46f9589 9e23bc984438e5db96c1d922977be60f {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_b56e037e.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012060009 7ec69b1c-b582-42c6-aa0a-90359916d5b9_mirnaseq_gdc_realn.bam 268079605 BAM harmonized CPTAC3 a73668e4-caad-4069-baa8-357126783f29 d519b4e61d4ea5153128d3feee2c1bef {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_b56e037e.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.chimeric.gdc_realn.bam 240084679 BAM chimeric harmonized CPTAC3 eeca01bc-34a6-4dcf-8dd6-bff7abade56f c62260dab46f640eae14d1659aedf493 {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_b56e037e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.genomic.gdc_realn.bam 7611587497 BAM genomic harmonized CPTAC3 b764fd41-0e3e-49f6-ba91-fac5c79c38f4 482672ded610ca62dfaea3ad4836a05b {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_b56e037e.RNA-Seq.S36_L006_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R1_001.fastq.gz 3443358409 FASTQ S36_L006_R1 unaligned CPTAC3 a7e3bd23-6487-47ac-a2a2-7d2d12f94240 c4d60186f533ac855ec50e905790c716 {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_b56e037e.RNA-Seq.S36_L006_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R2_001.fastq.gz 4052867811 FASTQ S36_L006_R2 unaligned CPTAC3 4925b454-cfe4-4889-8753-5bbf48c6ad61 57a7659a2a6e526ce9981818bafa19fa {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_b56e037e.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.transcriptome.gdc_realn.bam 7934663645 BAM transcriptome harmonized CPTAC3 d24e4c7c-40af-4eef-a67c-f0da52b5bdac 98726711bedcd89f83d94dbeed610e1c {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_f2ce79ae.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012050009 204367490048_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7bf56131-57e1-481a-8134-d154e9717a3c bd882d8da2cb41b447468706bbd4f249 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_f2ce79ae.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012050009 204367490048_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 b3966211-6115-4064-886e-5d7ef6f50456 9016aae05b80a24b7e8df218cf827a49 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_f2ce79ae.WGS.T C3N-00314 CCRCC WGS tumor CPT0012050009 CPT0012050009.WholeGenome.RP-2158.bam 27336648108 BAM aligned CPTAC3 c8789117-2e7b-4b44-9cd5-faa7cd03e64e 8f55bdd68359d87879d11f142e141b1f {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_f2ce79ae.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012050009 61a1bd09-ad37-4441-8a13-c7a14beb786a_wgs_gdc_realn.bam 81573818032 BAM harmonized CPTAC3 eb632e37-7b03-4fa7-9868-6149cc14275b 429326c356492af854f8a3cca85b2feb {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_f2ce79ae.WXS.T C3N-00314 CCRCC WXS tumor CPT0012050009 CPT0012050009.WholeExome.RP-1303.bam 45924930918 BAM aligned CPTAC3 bb6f1faf-ecc8-464d-8ca7-0e1d55aad8dd ee942c140f615b32decfcd23d6820164 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_f2ce79ae.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012050009 61a1bd09-ad37-4441-8a13-c7a14beb786a_wxs_gdc_realn.bam 64235015996 BAM harmonized CPTAC3 86119262-6336-4f9d-b940-a694672965f4 6f6164ef46dfec84ac63afa457b0eb99 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_fb783585.miRNA-Seq.S31_L002_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012050005 200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L002_R1_001.unaln.bam 182961498 BAM S31_L002_R1 unaligned CPTAC3 281233ae-ba2f-49a8-8092-9647f268701e ee65a27bb14c1a7c0b5aa478cbb21e5d {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_fb783585.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012050005 3ac66e76-e7e9-4c37-aedf-a92ad6a4ff1f_mirnaseq_gdc_realn.bam 202747221 BAM harmonized CPTAC3 144f754c-70c7-4717-80d7-9930ecbb75b3 6141a26308491570eb6d23cf0971340b {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_fb783585.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.chimeric.gdc_realn.bam 46110621 BAM chimeric harmonized CPTAC3 45972d5b-f7a7-4cec-b828-e3f48ce9ff5c c468144c1b336346d141aba64eae857d {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_fb783585.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.genomic.gdc_realn.bam 9318434702 BAM genomic harmonized CPTAC3 d2588708-a06d-43a6-af42-ee888a5ae229 165b9a6f2ff543f3f6679da61719ce3a {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_fb783585.RNA-Seq.S13_L004_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 4263636590 FASTQ S13_L004_R1 unaligned CPTAC3 a046126a-c032-452a-bb72-6d2f0a1c2df3 1cd981a2c70299407f9ab4f691d53220 {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_fb783585.RNA-Seq.S13_L004_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 4968549870 FASTQ S13_L004_R2 unaligned CPTAC3 b3fedb93-436d-4d78-9e32-444b0ae2c98a d92581a79f809b992cb29f7a6bab6c78 {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00314.DUP_fb783585.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.transcriptome.gdc_realn.bam 10316563363 BAM transcriptome harmonized CPTAC3 7948e940-994b-49ce-bd2c-69efa75a9c1a 80c5423275afb63280d5d4c9d1a5c70a {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00314.MethArray.Green.A C3N-00314 CCRCC Methylation_Array tissue_normal CPT0012090009 204930630040_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2b632613-9f2f-4946-aa58-b105168fff5c 30a1b360d9a1f030964b884670466394 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012080009 202184990057_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8525ba4b-702d-40e4-a786-ca992b7e451a 1cc5b96c6faffb9a737677e89402692e {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor"} -C3N-00314.MethArray.Red.A C3N-00314 CCRCC Methylation_Array tissue_normal CPT0012090009 204930630040_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 db2c16c7-5047-4f5d-8def-0f826f99e290 837ffdffd50018203bd26fa1d503a92e {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012080009 202184990057_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 d06d4677-0561-4e19-ba21-a1c173934849 6d75fb4c8430d7dd9f494a3936026f29 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor"} -C3N-00314.miRNA-Seq.A.hg38 C3N-00314 CCRCC miRNA-Seq tissue_normal CPT0012090013 e19b6006-2801-4c1e-9c53-6f7d2be7e76c_mirnaseq_gdc_realn.bam 265996077 BAM harmonized CPTAC3 cd74fbf5-a0f4-4b52-8f8e-ad7a2edfae20 d2232018f4c20092f478282d7169881b {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.miRNA-Seq.S14_L006_R1.A C3N-00314 CCRCC miRNA-Seq tissue_normal CPT0012090013 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L006_R1_001.unaln.bam 245330773 BAM S14_L006_R1 unaligned CPTAC3 61f2f83f-8526-4ecb-baaf-a4b37cf26485 235a72a41d2f817d28dd9c15bbc1bc97 {"aliquot_tag": "ALQ_cef04cf0", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.miRNA-Seq.S3_L001_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012080006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAAAAG_S3_L001_R1_001.unaln.bam 338571909 BAM S3_L001_R1 unaligned CPTAC3 bf46b333-83d7-4de6-abd2-f21ac7aae3c9 8404306d844cd3134f36307ba62ad5bb {"aliquot_tag": "ALQ_9ae1a08e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012080006 2115ca6a-507e-49b7-a1ad-91a21373a32e_mirnaseq_gdc_realn.bam 365102772 BAM harmonized CPTAC3 7cf14d87-daa6-4f8f-b72b-d05cca3d6cbb 67471949db4dff7f891a36d0c8a89fe5 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor"} -C3N-00314.RNA-Seq.chimeric.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.chimeric.gdc_realn.bam 84208705 BAM chimeric harmonized CPTAC3 e5269016-10ed-4b92-9db1-db8eb27353f6 af9aba642129d1bec8652b32262e10ab {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.chimeric.gdc_realn.bam 62192412 BAM chimeric harmonized CPTAC3 c1904750-fea8-47e7-8b53-3afae963abc8 9055608dee25da2c2360d06f1e04cd66 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor"} -C3N-00314.RNA-Seq.genomic.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.genomic.gdc_realn.bam 10296757393 BAM genomic harmonized CPTAC3 fddb320f-86a1-4e54-af8d-b81c670ea708 47c36356e4e50c9a94d2dbc7c27d093b {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.genomic.gdc_realn.bam 5572900303 BAM genomic harmonized CPTAC3 75f17447-e096-4f85-8f98-0fa8bfb6866f 08fda3305067b82d3569b99c7164dbc0 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor"} -C3N-00314.RNA-Seq.S20_L005_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R1_001.fastq.gz 2472197253 FASTQ S20_L005_R1 unaligned CPTAC3 96b6f505-80d0-448f-820d-06892f3487cb 7319fde4a600747f70d7297c6c662993 {"aliquot_tag": "ALQ_9ae1a08e", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00314.RNA-Seq.S20_L005_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R2_001.fastq.gz 2736831042 FASTQ S20_L005_R2 unaligned CPTAC3 01dbf604-7941-4bd4-9671-8d1ee780ee7a caa1f62cc70b60ec40a22a9fb09d0a4a {"aliquot_tag": "ALQ_9ae1a08e", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00314.RNA-Seq.S38_L007_R1.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R1_001.fastq.gz 4282128674 FASTQ S38_L007_R1 unaligned CPTAC3 29804040-bbf0-4206-9e79-6150a33fb325 96881e19ab7ee62e2e03ee7b014b45c3 {"aliquot_tag": "ALQ_cef04cf0", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.RNA-Seq.S38_L007_R2.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R2_001.fastq.gz 4601135914 FASTQ S38_L007_R2 unaligned CPTAC3 b49b449f-cc83-4690-9346-a6b4ec327900 7a47b7873f7c141263a383c7f256707b {"aliquot_tag": "ALQ_cef04cf0", "sample": "S38", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.RNA-Seq.transcriptome.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.transcriptome.gdc_realn.bam 8595119063 BAM transcriptome harmonized CPTAC3 df7f0000-b1db-4ad3-9c1d-53bfb567ba82 8e564115d3e7873ba9120feb8c595507 {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.transcriptome.gdc_realn.bam 6303688009 BAM transcriptome harmonized CPTAC3 3f5a8589-f2fd-4124-83bd-d19fabcf44dc 9d8933d9e57fde9539beaa37d1ed1412 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor"} -C3N-00314.WGS.A C3N-00314 CCRCC WGS tissue_normal CPT0012090009 CPT0012090009.WholeGenome.RP-1303.bam 73654891996 BAM aligned CPTAC3 c33681ed-d81e-48f2-981b-fc8a93fb8bf0 26c719da303783bf10d8aebcd5415282 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.WGS.A.hg38 C3N-00314 CCRCC WGS tissue_normal CPT0012090009 5a265e02-4edf-4eb8-aaac-1899ecd02c1a_wgs_gdc_realn.bam 107987906517 BAM harmonized CPTAC3 7c433af8-8820-4572-9476-7c3893ac2268 da6483a2a46c909ce8a4edf7f92952c3 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.WGS.N C3N-00314 CCRCC WGS blood_normal CPT0012150002 CPT0012150002.WholeGenome.RP-1303.bam 59000555430 BAM aligned CPTAC3 896378b1-e500-46fb-b9f1-29a7fa572ac7 32092b930c9ce74096d151b0381e58ba {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal"} -C3N-00314.WGS.N.hg38 C3N-00314 CCRCC WGS blood_normal CPT0012150002 21e53bba-f1a1-42c0-b026-cc40f5bb2b01_gdc_realn.bam 85741332148 BAM harmonized CPTAC3 24db41e0-c40a-4293-b808-618eba12cc03 85028686b57b77b8257d3000e06156f1 {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal"} -C3N-00314.WGS.T C3N-00314 CCRCC WGS tumor CPT0012080009 CPT0012080009.WholeGenome.RP-1303.bam 67396987712 BAM aligned CPTAC3 00fb0bff-d567-4c4c-8723-3d59ef0a5dae 7dcc4e0ec4d0817f096679ca5ca3fa37 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor"} -C3N-00314.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012080009 8bfede7e-2578-413c-bea6-447f26b9081d_gdc_realn.bam 99103885152 BAM harmonized CPTAC3 59a04947-d61a-4278-9e16-12fbfab1c6dd 2eec23e1d994fb2bbd3cc215e202e8e6 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor"} -C3N-00314.WXS.A C3N-00314 CCRCC WXS tissue_normal CPT0012090009 CPT0012090009.WholeExome.RP-1303.bam 34480578020 BAM aligned CPTAC3 739a92c9-2ef2-48cf-92a9-7b0bb9e3fad6 d3a2a7a0c875caa64137769f3a40ac35 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.WXS.A.hg38 C3N-00314 CCRCC WXS tissue_normal CPT0012090009 5a265e02-4edf-4eb8-aaac-1899ecd02c1a_wxs_gdc_realn.bam 47317251033 BAM harmonized CPTAC3 4cc44a73-fda5-4103-83a5-e2c11c6fe72f f92423ff2757e342b05c8c3a1b412ee8 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00314.WXS.N C3N-00314 CCRCC WXS blood_normal CPT0012150002 CPT0012150002.WholeExome.RP-1303.bam 29318133654 BAM aligned CPTAC3 a9f7f138-49fd-4012-86c3-91fe2d963c04 ac1ef1a758c9fcf400acfda196068889 {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal"} -C3N-00314.WXS.N.hg38 C3N-00314 CCRCC WXS blood_normal CPT0012150002 21e53bba-f1a1-42c0-b026-cc40f5bb2b01_gdc_realn.bam 40420145067 BAM harmonized CPTAC3 15cff317-7193-49d0-ba9f-cd4e363c564f 4f9429318cd3d4ae67a8a7d77069fdf3 {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal"} -C3N-00314.WXS.T C3N-00314 CCRCC WXS tumor CPT0012080009 CPT0012080009.WholeExome.RP-1303.bam 22943919203 BAM aligned CPTAC3 3370a5d5-cde6-4a17-aa4f-022ce4a2ba95 5d9244e22d1d003a0bed11646e931d96 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor"} -C3N-00314.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012080009 8bfede7e-2578-413c-bea6-447f26b9081d_gdc_realn.bam 31511944675 BAM harmonized CPTAC3 ef10ada7-bbcd-4238-be14-931764592a11 4a269391251d265c68bb212ccc06f89b {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor"} -C3N-00315.ANN_15b4289d.WGS.N C3N-00315 CCRCC WGS blood_normal CPT0012240002 CPT0012240002.WholeGenome.RP-1303.bam 62155508227 BAM aligned CPTAC3 5bc6879c-0b43-4e73-ad3e-9de9776e75aa 4985ac67e15887adca93fa4f0faec056 {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00315.ANN_15b4289d.WGS.N.hg38 C3N-00315 CCRCC WGS blood_normal CPT0012240002 b9b589dd-9f9d-4b4d-82cd-048378b3101a_gdc_realn.bam 90812352968 BAM harmonized CPTAC3 45243e54-a9f8-4db6-b6dd-20baf0df9705 ac8b00e27f89a429eb2369bb67bd4405 {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00315.ANN_15b4289d.WXS.N C3N-00315 CCRCC WXS blood_normal CPT0012240002 CPT0012240002.WholeExome.RP-1303.bam 24457273067 BAM aligned CPTAC3 4472e814-ca77-4871-9556-b6ff2503d700 c70edbd9356943bcde0f0f5a1837a22b {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00315.ANN_15b4289d.WXS.N.hg38 C3N-00315 CCRCC WXS blood_normal CPT0012240002 b9b589dd-9f9d-4b4d-82cd-048378b3101a_gdc_realn.bam 33497000704 BAM harmonized CPTAC3 68af6901-66a3-4912-8f6f-6d32e00889aa 964e718e9a99fbc3a538d06569f9cbd7 {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00315.ANN_c1026eba.MethArray.Green.T C3N-00315 CCRCC Methylation_Array tumor CPT0012180009 202184990008_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c6963688-370d-4407-864c-6c84f235e36b b5c22010b921e797c18f7c56074d770e {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00315.ANN_c1026eba.MethArray.Red.T C3N-00315 CCRCC Methylation_Array tumor CPT0012180009 202184990008_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5ce362d-c736-44bb-a34b-9aa9274904e6 e7705317c41b3bb0f80bced6f6908790 {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00315.ANN_c1026eba.WGS.T C3N-00315 CCRCC WGS tumor CPT0012180009 CPT0012180009.WholeGenome.RP-1303.bam 61828501333 BAM aligned CPTAC3 8b4793e8-d3b8-4ad0-9237-d6e9b36a2017 689681e61ce6835cbd72fcf8496ae63b {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00315.ANN_c1026eba.WGS.T.hg38 C3N-00315 CCRCC WGS tumor CPT0012180009 3e8cabbe-d332-47b7-b864-438a8f28f62a_gdc_realn.bam 90584739284 BAM harmonized CPTAC3 0b50e4c3-271b-4c40-a795-80b3e8ab79b4 00eb67988fb705cb50714a4303e72fc7 {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00315.ANN_c1026eba.WXS.T C3N-00315 CCRCC WXS tumor CPT0012180009 CPT0012180009.WholeExome.RP-1303.bam 23719768591 BAM aligned CPTAC3 4922eee1-32f4-456d-bda1-e5e92399d691 fcf0fb0caee0d316f036119217843651 {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00315.ANN_c1026eba.WXS.T.hg38 C3N-00315 CCRCC WXS tumor CPT0012180009 3e8cabbe-d332-47b7-b864-438a8f28f62a_gdc_realn.bam 32566983424 BAM harmonized CPTAC3 aa702074-3079-4da7-a98f-c1fedd424dd3 be10b0a6525c03c40e948f911b7a680b {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00315.miRNA-Seq.S23_L002_R1.T C3N-00315 CCRCC miRNA-Seq tumor CPT0012180006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAACTA_S23_L002_R1_001.unaln.bam 197235238 BAM S23_L002_R1 unaligned CPTAC3 e9467102-2797-4055-ab4e-9453b76bba62 885a462d4af9e16da472faef38b13b15 {"aliquot_tag": "ALQ_51bd732b", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00315.miRNA-Seq.T.hg38 C3N-00315 CCRCC miRNA-Seq tumor CPT0012180006 d1f23e30-8d2c-47aa-96af-a3c21b10203a_mirnaseq_gdc_realn.bam 210365606 BAM harmonized CPTAC3 182ecb2b-b008-4a67-88f3-badf39c4fbc6 56cd4dfbf380559ba487bdb4cbb15a70 {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor"} -C3N-00315.RNA-Seq.chimeric.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.chimeric.gdc_realn.bam 83008008 BAM chimeric harmonized CPTAC3 73545d64-182b-4d38-b719-43dc554415bd 1b80ade61c32954aac8d1364435685b1 {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor"} -C3N-00315.RNA-Seq.genomic.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.genomic.gdc_realn.bam 9935887951 BAM genomic harmonized CPTAC3 eb142ecb-0d39-43f1-a249-13f465036a17 a4367d1ffa554d8a79ae44e23a1364bf {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor"} -C3N-00315.RNA-Seq.S17_L005_R1.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 4635214588 FASTQ S17_L005_R1 unaligned CPTAC3 0cc4eef5-1c17-47c0-b859-7f6cffcfd680 7aafb59e1b8450971813ded457fb0a13 {"aliquot_tag": "ALQ_51bd732b", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00315.RNA-Seq.S17_L005_R2.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 4819981461 FASTQ S17_L005_R2 unaligned CPTAC3 08d6200f-2755-4eff-b345-7fa1a68d82dc 470a8edbe139edf61c09307742523b59 {"aliquot_tag": "ALQ_51bd732b", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00315.RNA-Seq.transcriptome.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.transcriptome.gdc_realn.bam 12420701554 BAM transcriptome harmonized CPTAC3 06d27fff-1f9e-4783-8990-677321aaae74 4d4bd84a4c21f188f66306778504440b {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_766f4abc.MethArray.Green.T C3N-00317 CCRCC Methylation_Array tumor CPT0012260012 204367490084_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 ea72b685-9d14-4e7a-a516-c23636272d33 cae28665f4c3112fdf6dcf25021df424 {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_766f4abc.MethArray.Red.T C3N-00317 CCRCC Methylation_Array tumor CPT0012260012 204367490084_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 32c86870-9493-4cf8-8665-e43f8053bd7f f7b0b901dd4ee29f2fbfa88772c7f3b8 {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_766f4abc.WGS.T C3N-00317 CCRCC WGS tumor CPT0012260012 CPT0012260012.WholeGenome.RP-2158.bam 40006681574 BAM aligned CPTAC3 16115974-3222-479b-ad7b-cb1d1ff1b1ee ee42c07f1da71ec03dd659ed40f12ead {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_766f4abc.WGS.T.hg38 C3N-00317 CCRCC WGS tumor CPT0012260012 891d0152-de40-4250-b27a-52cefa7a6193_wgs_gdc_realn.bam 120493214690 BAM harmonized CPTAC3 8d918483-16be-44bb-92a4-3832254e2ea6 e81dfc63575dcfa287330b1e396aef3d {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_766f4abc.WXS.T C3N-00317 CCRCC WXS tumor CPT0012260012 CPT0012260012.WholeExome.RP-1303.bam 21414609107 BAM aligned CPTAC3 382f5908-1d87-492e-b46b-26f7487543e1 00047d30d7c6aa7c60c915d031012d4c {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_766f4abc.WXS.T.hg38 C3N-00317 CCRCC WXS tumor CPT0012260012 891d0152-de40-4250-b27a-52cefa7a6193_wxs_gdc_realn.bam 29273662099 BAM harmonized CPTAC3 1a3f59cc-f69d-4878-8d87-7af4ef3fe221 baab179612508ef2122d4b1db5f159cc {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_f8a6a275.miRNA-Seq.S37_L005_R1.T C3N-00317 CCRCC miRNA-Seq tumor CPT0012260009 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L005_R1_001.unaln.bam 315393603 BAM S37_L005_R1 unaligned CPTAC3 ebc93d18-aa19-470b-b44c-c9e001c77f20 4df83f9bc89bb2bae8439fce665bf133 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_f8a6a275.miRNA-Seq.T.hg38 C3N-00317 CCRCC miRNA-Seq tumor CPT0012260009 5f64e2de-2fb3-4ae7-9862-6074a82e2d22_mirnaseq_gdc_realn.bam 343273350 BAM harmonized CPTAC3 d5315c94-24a9-4540-9c67-ce4577f23e32 cf055a0177437a2aafb51798d4085f65 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_f8a6a275.RNA-Seq.chimeric.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.chimeric.gdc_realn.bam 149914560 BAM chimeric harmonized CPTAC3 ef45d407-9c51-4061-a02f-663081e62300 b8015078d5c0e4feb07e148277202e67 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_f8a6a275.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.genomic.gdc_realn.bam 9441302845 BAM genomic harmonized CPTAC3 baff8b63-a61c-4ec2-a825-093ce38a8290 98cffbfbb988c20307c6f28c2000205b {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_f8a6a275.RNA-Seq.S40_L007_R1.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R1_001.fastq.gz 4446715920 FASTQ S40_L007_R1 unaligned CPTAC3 3d8eeeba-2b19-46ac-8047-b76312922225 a18fb0500fb1f597471987bbd8cc82e8 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_f8a6a275.RNA-Seq.S40_L007_R2.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R2_001.fastq.gz 5173788304 FASTQ S40_L007_R2 unaligned CPTAC3 bc68e827-b6e2-4c3c-a12a-12110a8661bf 79e960dbb45e66e133c40ac23e71915c {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00317.DUP_f8a6a275.RNA-Seq.transcriptome.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.transcriptome.gdc_realn.bam 12323354871 BAM transcriptome harmonized CPTAC3 3acb0850-c2a7-4df7-8f33-ecd5f2666f40 71d7a5a3050dcc2cba16efe842907db0 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00317.MethArray.Green.A C3N-00317 CCRCC Methylation_Array tissue_normal CPT0012290009 204930640041_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 998e112c-bbf8-45a6-a254-bfc82873c9b7 60fb1dec3f6a57a1dcf645938996ebbf {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00317.MethArray.Green.T C3N-00317 CCRCC Methylation_Array tumor CPT0012280009 202184990013_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ecde6749-94d6-41bb-a9ec-76697089e5f1 d042caf608dc9e399d5114270676755b {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor"} -C3N-00317.MethArray.Red.A C3N-00317 CCRCC Methylation_Array tissue_normal CPT0012290009 204930640041_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 f73c1f78-3e25-45c6-9c85-861a51ec169e 5cde08034706661c4adb7b803214574c {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00317.MethArray.Red.T C3N-00317 CCRCC Methylation_Array tumor CPT0012280009 202184990013_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 208c0120-9952-41fb-b499-f8fc0c79b2f1 c0e759208a76fb22ef818d64e84f6a1f {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor"} -C3N-00317.miRNA-Seq.S6_L003_R1.T C3N-00317 CCRCC miRNA-Seq tumor CPT0012280006 181113_UNC31-K00269_0164_AH23NNBBXY_CACCGG_S6_L003_R1_001.unaln.bam 203594470 BAM S6_L003_R1 unaligned CPTAC3 f3f34b0a-61ce-439d-b46b-df17d7673979 dd6b32fa66710da023df56ff95b939e2 {"aliquot_tag": "ALQ_d7290185", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00317.miRNA-Seq.T.hg38 C3N-00317 CCRCC miRNA-Seq tumor CPT0012280006 4e1883fe-7867-4204-8543-ee4e9c5378d0_mirnaseq_gdc_realn.bam 220565141 BAM harmonized CPTAC3 3a2d115a-e5d9-4aa8-b669-3920eb2e2617 9f5162dfa9b126605ca2aed7ff9ace31 {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor"} -C3N-00317.RNA-Seq.chimeric.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.chimeric.gdc_realn.bam 61497293 BAM chimeric harmonized CPTAC3 1a182c61-f2aa-4533-8baf-c9b8bb8dbf7d 8b10431bc1d7f9bc8cdfe830fea27eac {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor"} -C3N-00317.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.genomic.gdc_realn.bam 7518549298 BAM genomic harmonized CPTAC3 92f02ad9-402a-4210-944e-777004cf4a99 ee26d83b88fbd84ae58d7ff73c3ea0c7 {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor"} -C3N-00317.RNA-Seq.S6_L007_R1.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R1_001.fastq.gz 3673590014 FASTQ S6_L007_R1 unaligned CPTAC3 2a4fb96b-e68b-402e-94dd-402cc33de691 b9c7e103998cdabfa744c89527e2aad0 {"aliquot_tag": "ALQ_d7290185", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00317.RNA-Seq.S6_L007_R2.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R2_001.fastq.gz 3990008813 FASTQ S6_L007_R2 unaligned CPTAC3 21c429bb-a631-4195-be11-c6b6773ddc2d 41142e1dcac8a70c2e77b8555ed8cac4 {"aliquot_tag": "ALQ_d7290185", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00317.RNA-Seq.transcriptome.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.transcriptome.gdc_realn.bam 10602153212 BAM transcriptome harmonized CPTAC3 88c84b03-e5eb-4341-892c-7c6dea9d0f52 b6c47800d43467e34aaebd8f081c7dcb {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor"} -C3N-00317.WGS.A C3N-00317 CCRCC WGS tissue_normal CPT0012290009 CPT0012290009.WholeGenome.RP-1303.bam 62528489541 BAM aligned CPTAC3 41602fac-e7dc-4df4-b74b-b88fc94b03d3 8e43c896166c11d0d981afa15e618384 {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00317.WGS.A.hg38 C3N-00317 CCRCC WGS tissue_normal CPT0012290009 67b95338-b369-4e42-9b0f-ac7d5cae97fc_wgs_gdc_realn.bam 90789444765 BAM harmonized CPTAC3 bcfe5567-6e70-47d0-ad80-e54cf37771a9 e63fda0e1ca5d82477c8d1d360087a5f {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00317.WGS.N C3N-00317 CCRCC WGS blood_normal CPT0012350002 CPT0012350002.WholeGenome.RP-1303.bam 85582316446 BAM aligned CPTAC3 bdbddbbd-1182-4994-8d34-e50d9bfadc7c 8ef6090cc8509b764b4400339e9e763a {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal"} -C3N-00317.WGS.N.hg38 C3N-00317 CCRCC WGS blood_normal CPT0012350002 9fb1577a-959f-46aa-be5d-f09257637647_gdc_realn.bam 121510278216 BAM harmonized CPTAC3 726b25d8-ff56-457a-96a1-1ffc27b2cfff e9ac8607094f209900e6366c1b4f2e75 {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal"} -C3N-00317.WGS.T C3N-00317 CCRCC WGS tumor CPT0012280009 CPT0012280009.WholeGenome.RP-1303.bam 72172701941 BAM aligned CPTAC3 95ba7629-4cdc-4fa1-a2a7-3355b1051fab cca9004cbbdf204599c8bd6163215054 {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor"} -C3N-00317.WGS.T.hg38 C3N-00317 CCRCC WGS tumor CPT0012280009 0984ed95-1b7c-4757-9a97-4333c5c229e5_gdc_realn.bam 106360759636 BAM harmonized CPTAC3 9343e025-d1a5-4c79-b7ec-6a0f32a8e002 8f1b3d0a2e6c348f62a5525c37581b5e {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor"} -C3N-00317.WXS.A C3N-00317 CCRCC WXS tissue_normal CPT0012290009 CPT0012290009.WholeExome.RP-1303.bam 36221436608 BAM aligned CPTAC3 0715f7c5-06c3-4d1b-baf9-a015cce18fa4 890fbc2e574ab9aaaaad85ec3a987067 {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00317.WXS.A.hg38 C3N-00317 CCRCC WXS tissue_normal CPT0012290009 67b95338-b369-4e42-9b0f-ac7d5cae97fc_wxs_gdc_realn.bam 48717442545 BAM harmonized CPTAC3 d56540c0-1df0-40a2-9314-d10e677192fc da507d9f404cfadfcf67075536da4b18 {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00317.WXS.N C3N-00317 CCRCC WXS blood_normal CPT0012350002 CPT0012350002.WholeExome.RP-1303.bam 23314273978 BAM aligned CPTAC3 7ce73731-31fd-43e0-8334-e3fe959ddc77 7b2108c4b2253f818caee0a7a4c97323 {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal"} -C3N-00317.WXS.N.hg38 C3N-00317 CCRCC WXS blood_normal CPT0012350002 9fb1577a-959f-46aa-be5d-f09257637647_gdc_realn.bam 32022229435 BAM harmonized CPTAC3 6628688a-fa7f-4977-835c-b8eb6007c760 039eb5be43d1ba4839853d85e5e6edf3 {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal"} -C3N-00317.WXS.T C3N-00317 CCRCC WXS tumor CPT0012280009 CPT0012280009.WholeExome.RP-1303.bam 28280433884 BAM aligned CPTAC3 8b89c2fa-2f6a-44df-8e31-e745987d7475 fca542827272bbd6675be5e7581fedb6 {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor"} -C3N-00317.WXS.T.hg38 C3N-00317 CCRCC WXS tumor CPT0012280009 0984ed95-1b7c-4757-9a97-4333c5c229e5_gdc_realn.bam 38506250909 BAM harmonized CPTAC3 376a79e0-5220-485d-bedd-5f0e79a3da32 f1d4683afff0c8c5c745323b6c80f6b4 {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_1c75d220.miRNA-Seq.S22_L002_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012380006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L002_R1_001.unaln.bam 284601693 BAM S22_L002_R1 unaligned CPTAC3 2f18d805-7d6d-42af-8070-e90c8168c479 d5cf651bc2eb3d9c5a7332ced02cfed0 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_1c75d220.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012380006 8cdc2aca-acce-4d10-bbc1-a447325909a0_mirnaseq_gdc_realn.bam 319705369 BAM harmonized CPTAC3 c071e737-84f9-4ebf-bf67-72c1e8d680e8 fc595300a3bcd8a9114285e416c3547a {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_1c75d220.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.chimeric.gdc_realn.bam 82564128 BAM chimeric harmonized CPTAC3 e06d8fab-06cf-4ab1-b31d-ad22420dbe8f 74fae14cce7c3a4f535b8c89bceed7a1 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_1c75d220.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.genomic.gdc_realn.bam 7724049130 BAM genomic harmonized CPTAC3 27d5cedd-9486-4452-a62e-859e42735875 14a0402b322d645e00e6da469d47e785 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_1c75d220.RNA-Seq.S12_L003_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 3679918907 FASTQ S12_L003_R1 unaligned CPTAC3 66919a0f-2958-4676-b23f-60171879bb9a 25d9290804dcfc8209d969f391c3d6fb {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_1c75d220.RNA-Seq.S12_L003_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4334583810 FASTQ S12_L003_R2 unaligned CPTAC3 20ec54c5-b82b-4421-b92b-cb45fda6e36b 46daa572b295ea84a335151c44b99f3c {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_1c75d220.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.transcriptome.gdc_realn.bam 10591450782 BAM transcriptome harmonized CPTAC3 d64cbd5f-e9e0-4598-adf6-fdbce376cfa3 639a26ea4882b5092c2a9dc6b2c5e828 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_2115fb90.miRNA-Seq.S28_L002_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012390006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L002_R1_001.unaln.bam 225705483 BAM S28_L002_R1 unaligned CPTAC3 629eec19-2b96-4d77-a82a-6d11c994777c 17bd70557a727173f919d27af718aba6 {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_2115fb90.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012390006 7c5ac62e-3b63-46b8-bc92-5c9b3518cf71_mirnaseq_gdc_realn.bam 252781474 BAM harmonized CPTAC3 ef556d14-e961-41bd-a2b1-6fd929161639 0a11b054e67572eab835c72210577fa7 {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_2115fb90.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.chimeric.gdc_realn.bam 70539508 BAM chimeric harmonized CPTAC3 42632c2a-6525-40de-ad10-67ed3f81e4db 1512798dcd759f8a9ff3d2f2ac0bb36a {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_2115fb90.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.genomic.gdc_realn.bam 9648926143 BAM genomic harmonized CPTAC3 23b8e1e6-7892-472b-a165-38af8b87a474 a68fefcb92f9ce3891aff6cf61582cde {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_2115fb90.RNA-Seq.S9_L003_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4571285022 FASTQ S9_L003_R1 unaligned CPTAC3 f69ff481-fb60-4571-ae1e-5532b83b10be 8ff84f7dfcbdef934d9d8faf92349287 {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_2115fb90.RNA-Seq.S9_L003_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 5356526609 FASTQ S9_L003_R2 unaligned CPTAC3 55661e0f-51e4-4c2d-a719-28620deeb87b fb8c05341b28ff91c6e545438458b5fa {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_2115fb90.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.transcriptome.gdc_realn.bam 13265768933 BAM transcriptome harmonized CPTAC3 071a5c68-95f7-4149-96eb-5d41237b3b9a 9561ea692dad1927d483ad32d766a62c {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_33fa71d0.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012360009 204367400148_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ad8ae0db-4798-4334-9196-bc864a27edac 186f8088fbd343a67a4f1299b7dbfd61 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_33fa71d0.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012360009 204367400148_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 a5138284-3fff-40a5-894b-1e2e5a3e6a8f 7fb0c2badbc56e734a70e2b4cf7874fa {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_33fa71d0.WGS.T C3N-00320 CCRCC WGS tumor CPT0012360009 CPT0012360009.WholeGenome.RP-2158.bam 27701671239 BAM aligned CPTAC3 e17f2abd-2165-489c-a83f-33944b257220 4fcc3139a927f2cd4c3468aa584d17b3 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_33fa71d0.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012360009 1c0ce28b-5b5a-4673-9c87-c8ad76d3d376_wgs_gdc_realn.bam 82817973510 BAM harmonized CPTAC3 df4035c8-163a-4432-8b9d-ae4411909bfa 58750abd8f9039ddfafc53e86926b655 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_33fa71d0.WXS.T C3N-00320 CCRCC WXS tumor CPT0012360009 CPT0012360009.WholeExome.RP-1303.bam 21949719188 BAM aligned CPTAC3 e4b1b670-7d8b-4743-b2de-623a9ce087aa c80ce3d3559b5331b8df5468e1160d26 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_33fa71d0.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012360009 1c0ce28b-5b5a-4673-9c87-c8ad76d3d376_wxs_gdc_realn.bam 29955180612 BAM harmonized CPTAC3 d18eaf8a-f429-4428-9396-479b7ca175fe b9218ff78b8120fb42c6df3167fd8ad0 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_8ccacfb1.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012380009 204367490057_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 16825a68-7794-42e2-b1a9-0c8665cbce63 57f3e5a987242420c087695f1c72d280 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_8ccacfb1.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012380009 204367490057_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 a522833c-7654-4cb3-8647-49aa4ea9191a 9165db2d66834608cec4022429782fb5 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_8ccacfb1.WGS.T C3N-00320 CCRCC WGS tumor CPT0012380009 CPT0012380009.WholeGenome.RP-2158.bam 30793503011 BAM aligned CPTAC3 ef2b56e3-6169-4298-a115-4fafe99f6f62 03064c7efcae56f4567791c014537005 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_8ccacfb1.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012380009 1632a6bf-ad50-4049-ae37-69d390da80ad_wgs_gdc_realn.bam 93283241837 BAM harmonized CPTAC3 85dac21e-1fef-451e-b39f-8e80cb2c1fe8 842848a3fb3a867291c44cf46cba773c {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_8ccacfb1.WXS.T C3N-00320 CCRCC WXS tumor CPT0012380009 CPT0012380009.WholeExome.RP-1303.bam 23791812935 BAM aligned CPTAC3 340f4483-55cc-4740-aa5e-7e6eff9d7d8c 916957a52a365149533b7a60dbffe5a1 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_8ccacfb1.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012380009 1632a6bf-ad50-4049-ae37-69d390da80ad_wxs_gdc_realn.bam 32216952636 BAM harmonized CPTAC3 87b12750-cf04-4c16-a6e9-76cb26623a50 62cbf026b57a48a17b563def2618677f {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_a3456c41.miRNA-Seq.S38_L003_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012360006 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L003_R1_001.unaln.bam 339476070 BAM S38_L003_R1 unaligned CPTAC3 7491cd65-34fb-434e-a4ac-b54621b96a81 cc6b51c7d8dda3275fb4e02696becec4 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_a3456c41.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012360006 76505d6b-d1d5-416e-8d71-9d49c1540aaf_mirnaseq_gdc_realn.bam 372884577 BAM harmonized CPTAC3 fce3a91f-fadb-4ef9-8ab9-2d05cc75ea5d cabc65c48c68aa54b3feaa3e7fffed3f {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_a3456c41.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.chimeric.gdc_realn.bam 79148040 BAM chimeric harmonized CPTAC3 6e0066d9-677e-4d27-a01d-38e384092801 fc620d6f6d73d1d103e03a63dce04561 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_a3456c41.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.genomic.gdc_realn.bam 8289038625 BAM genomic harmonized CPTAC3 28f73e5d-7b4c-4ca9-aab7-49f32897fed8 99a6865513c498c4cdb700cae417e6a1 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_a3456c41.RNA-Seq.S11_L003_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 3880063080 FASTQ S11_L003_R1 unaligned CPTAC3 cb1d2aee-af7c-40af-8301-4db2b1421d49 4444d3ed8a7a18d5760be054d18b15df {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_a3456c41.RNA-Seq.S11_L003_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4474796601 FASTQ S11_L003_R2 unaligned CPTAC3 6085220d-0b7d-4c0c-b6a5-11ca560676b8 9acec1826e88a79966d7ae40464fc357 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_a3456c41.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.transcriptome.gdc_realn.bam 11278861374 BAM transcriptome harmonized CPTAC3 6194822b-e965-438c-94c2-8ad14df89e14 0fec3c2767b12a3f3f1a8a4a58b54c4a {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_b1aae601.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012390009 204372030164_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6180d0ff-1a06-4684-83df-4a1fd88d96cc c6966dc091bab96de3d362fbb48006b0 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_b1aae601.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012390009 204372030164_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 671aee2b-188e-4d75-92f7-e1bf7ecf9dbd 086f2857e3fd1b70f8ed65e2f81d2c59 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_b1aae601.WGS.T C3N-00320 CCRCC WGS tumor CPT0012390009 CPT0012390009.WholeGenome.RP-2158.bam 34486830400 BAM aligned CPTAC3 57f06e0e-8a1a-4998-a8c5-74ab1321c27a ee96c250fa9981c5591f0e0f1b4ebcd3 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_b1aae601.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012390009 2e70ceb6-bfef-4c8b-894d-29857c50f189_wgs_gdc_realn.bam 105712127072 BAM harmonized CPTAC3 706caa2b-607d-4ccf-91f2-0a365056924c b10a616623abc4519b4eab5bb5f16e08 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_b1aae601.WXS.T C3N-00320 CCRCC WXS tumor CPT0012390009 CPT0012390009.WholeExome.RP-1303.bam 17790709051 BAM aligned CPTAC3 1e65d664-5aae-437a-bb07-54ad717627a1 73596a1e45ba7152a155d2ad4ffa1d7a {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.DUP_b1aae601.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012390009 2e70ceb6-bfef-4c8b-894d-29857c50f189_wxs_gdc_realn.bam 24384065056 BAM harmonized CPTAC3 5e171167-5b6f-49e0-a851-f4cba240ecf9 9dddf411c4a45330a128e6b784038e93 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00320.MethArray.Green.A C3N-00320 CCRCC Methylation_Array tissue_normal CPT0013790009 204930630109_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6f017cd0-b759-473b-9c5d-9986e67e4fc1 a4d38f35ffce2376ede262deacc7157a {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00320.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012370009 202176290116_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 036e8043-bc6d-4e69-b131-6a4cb73c3c66 c0b07640b3f77aec8e28b2c0b514521d {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor"} -C3N-00320.MethArray.Red.A C3N-00320 CCRCC Methylation_Array tissue_normal CPT0013790009 204930630109_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 d7776e75-7046-481f-b45d-142b8dec75c8 1e8ee20c85d12b18eeb82f2a3b9b81c4 {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00320.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012370009 202176290116_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 a349dddb-d6fa-4b74-942c-c6129dd68819 55975a848b7dac415018d885ed364140 {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor"} -C3N-00320.miRNA-Seq.S2_L003_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012370006 181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L003_R1_001.unaln.bam 281152360 BAM S2_L003_R1 unaligned CPTAC3 c33e1bc4-a082-4ddc-89f2-6984f05783db 014f7673247b91a967922a4ea3ff2bde {"aliquot_tag": "ALQ_9e2545f1", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012370006 8738c4d1-d405-475f-9a02-630f7ec9a26d_mirnaseq_gdc_realn.bam 311668242 BAM harmonized CPTAC3 f26f80f0-d544-402c-b9e9-2f6a0b709b61 e1864c178114bb0fdb57d474eedc9115 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.chimeric.gdc_realn.bam 48290566 BAM chimeric harmonized CPTAC3 8ce6be0d-1192-4901-8072-64d69946c406 991c77ec9e545d6ed4835247a48baf79 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.genomic.gdc_realn.bam 6274112352 BAM genomic harmonized CPTAC3 87e63566-1572-4d42-850f-6755e00ab3ca d5f203484f6c8fdbce518b1d3b2a1877 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.RNA-Seq.S9_L008_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R1_001.fastq.gz 3091322265 FASTQ S9_L008_R1 unaligned CPTAC3 37b120ef-3755-4e45-8be1-507d5c35c3e4 441e8f610fb2c14b1a3ebe8a6d464f09 {"aliquot_tag": "ALQ_9e2545f1", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.RNA-Seq.S9_L008_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R2_001.fastq.gz 3392071071 FASTQ S9_L008_R2 unaligned CPTAC3 94898532-9a80-4e95-872f-0947b84f97ba 0f7ec41918a06aa947f05ea005cc8123 {"aliquot_tag": "ALQ_9e2545f1", "sample": "S9", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00320.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.transcriptome.gdc_realn.bam 8517514902 BAM transcriptome harmonized CPTAC3 d1574f55-fdbc-4207-9761-60c742767558 f7544a262ab331976365365782605910 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor"} -C3N-00320.WGS.A C3N-00320 CCRCC WGS tissue_normal CPT0013790009 CPT0013790009.WholeGenome.RP-1303.bam 55439275683 BAM aligned CPTAC3 2f1589a0-c19e-4097-941f-57173cc7edb2 1af30ca89e8c05f0800c1c5aab29f558 {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00320.WGS.A.hg38 C3N-00320 CCRCC WGS tissue_normal CPT0013790009 4f532e9c-941f-4b49-8dbd-91d63703c946_wgs_gdc_realn.bam 80906710944 BAM harmonized CPTAC3 be927f6b-41da-4bdc-bc7a-2108446f4ce0 723257b5b5dde86adc5b05770ea2e71f {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00320.WGS.N C3N-00320 CCRCC WGS blood_normal CPT0012530002 CPT0012530002.WholeGenome.RP-1303.bam 59503838394 BAM aligned CPTAC3 09a1e9de-652f-4e1d-9ced-d4f7cdfbe5dd f59d07dbafdede50511cf102fb9cb1e0 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal"} -C3N-00320.WGS.N.hg38 C3N-00320 CCRCC WGS blood_normal CPT0012530002 c757ba45-b388-46bf-8eca-6984ac78b872_gdc_realn.bam 86274042139 BAM harmonized CPTAC3 c661b8e5-9335-4e64-9665-767f0cb11da4 31e395c479bb0113861dfc4100848163 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal"} -C3N-00320.WGS.T C3N-00320 CCRCC WGS tumor CPT0012370009 CPT0012370009.WholeGenome.RP-1303.bam 59682086301 BAM aligned CPTAC3 35247cfe-cc30-4a02-bcbc-36c421c233e7 8306505d2f6b5de3eaacbacc182b9d6c {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor"} -C3N-00320.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012370009 c79489e1-b42b-4426-99c1-a6008778a63c_gdc_realn.bam 87665635274 BAM harmonized CPTAC3 c0fb75ac-116e-4bc9-b0fa-904c76ead6ac 7401855bbaf8892ab1cd65e11d12ccf7 {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor"} -C3N-00320.WXS.A C3N-00320 CCRCC WXS tissue_normal CPT0013790009 CPT0013790009.WholeExome.RP-1303.bam 48614439466 BAM aligned CPTAC3 2b0d15c9-415f-4c41-9710-c47a4143fe15 17c8a223525de8bc517cfd44bd7bbb7f {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00320.WXS.A.hg38 C3N-00320 CCRCC WXS tissue_normal CPT0013790009 4f532e9c-941f-4b49-8dbd-91d63703c946_wxs_gdc_realn.bam 65456776510 BAM harmonized CPTAC3 41c25043-9857-4a20-87d2-9e000061eb84 05c4edf888d77395ee89ab2d50995adc {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00320.WXS.N C3N-00320 CCRCC WXS blood_normal CPT0012530002 CPT0012530002.WholeExome.RP-1303.bam 24651820755 BAM aligned CPTAC3 891dc65a-cf3a-4197-9b25-cfa67b957038 57ee0259d35ba4c76d0ae1426adf8ab7 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal"} -C3N-00320.WXS.N.hg38 C3N-00320 CCRCC WXS blood_normal CPT0012530002 c757ba45-b388-46bf-8eca-6984ac78b872_gdc_realn.bam 33801293421 BAM harmonized CPTAC3 3b9a2ebc-2dc9-45f5-b4e1-b67572db5204 b8e823b83a741fd0383b61bc7e8ddad6 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal"} -C3N-00320.WXS.T C3N-00320 CCRCC WXS tumor CPT0012370009 CPT0012370009.WholeExome.RP-1303.bam 25362461894 BAM aligned CPTAC3 2967f875-3cfe-4ec8-8e34-60a4f854730d a5d8d03156890cf9ab018f028a7a3d67 {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor"} -C3N-00320.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012370009 c79489e1-b42b-4426-99c1-a6008778a63c_gdc_realn.bam 34389676597 BAM harmonized CPTAC3 cf7fd859-abdd-4959-938b-2651f551b46b 9b6184e7ae76b5229b93a9d79648691f {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor"} -C3N-00321.MethArray.Green.T C3N-00321 UCEC Methylation_Array tumor CPT0010260006 202163530118_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bab47cf6-33a4-4d61-9399-5e5eb96a36c8 8489e85604494e68fe136cd54cc342e7 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor"} -C3N-00321.MethArray.Red.T C3N-00321 UCEC Methylation_Array tumor CPT0010260006 202163530118_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 7fbdc5ed-8a78-47b1-9170-b7177908d0d4 c14e5f8f21d9be8b725d1c0567c03799 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor"} -C3N-00321.miRNA-Seq.S5_L003_R1.T C3N-00321 UCEC miRNA-Seq tumor CPT0010260013 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L003_R1_001.unaln.bam 213546998 BAM S5_L003_R1 unaligned CPTAC3 ae0651ba-7465-49e3-9b34-66b86bf9c7d9 6211ee2d8fa282d5e2edc144231e34ff {"aliquot_tag": "ALQ_96f76b03", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00321.miRNA-Seq.T.hg38 C3N-00321 UCEC miRNA-Seq tumor CPT0010260013 34f015e0-5eff-494f-a06f-d65b69c6d3f0_mirnaseq_gdc_realn.bam 235902997 BAM harmonized CPTAC3 364cc440-ea91-43fd-968f-92b2b2586850 56dc7d6dffcea13d0d799b8a246d0e3b {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor"} -C3N-00321.RNA-Seq.chimeric.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.chimeric.gdc_realn.bam 81084810 BAM chimeric harmonized CPTAC3 2c0ba0dc-39b3-432f-b1d2-9813c5859403 873abf511d8fb5d6b2fa32f26ad75c74 {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor"} -C3N-00321.RNA-Seq.genomic.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.genomic.gdc_realn.bam 7081895409 BAM genomic harmonized CPTAC3 bb525823-44bc-4565-9130-e00534d486ac 09273adfdc2682ba4fafa7287cbc1728 {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor"} -C3N-00321.RNA-Seq.S21_L007_R1.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R1_001.fastq.gz 3752068132 FASTQ S21_L007_R1 unaligned CPTAC3 0de8cfbb-adb2-4d1d-91f6-685a03b16449 2e1f8547023d02e89e0d4a4ced588871 {"aliquot_tag": "ALQ_96f76b03", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00321.RNA-Seq.S21_L007_R2.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R2_001.fastq.gz 3994694692 FASTQ S21_L007_R2 unaligned CPTAC3 cc11b6d3-897f-4158-96a4-91b5ebbbb74e 5281010273ad198c901258b823d2440b {"aliquot_tag": "ALQ_96f76b03", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00321.RNA-Seq.transcriptome.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.transcriptome.gdc_realn.bam 9431039066 BAM transcriptome harmonized CPTAC3 ebaa25b8-971e-4503-8149-f91ffd0a2f58 8153294d2c7221ad13d3409454d8ff7a {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor"} -C3N-00321.WGS.N C3N-00321 UCEC WGS blood_normal CPT0010380002 CPT0010380002.WholeGenome.RP-1303.bam 69369614862 BAM aligned CPTAC3 cafbc744-d17d-40db-8263-791f2ae1cb1c b76b87b8720b22f82b9fac58b06f5207 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal"} -C3N-00321.WGS.N.hg38 C3N-00321 UCEC WGS blood_normal CPT0010380002 5af7cd9f-e8dd-49af-ac6a-6badeed9fd8d_gdc_realn.bam 101250756816 BAM harmonized CPTAC3 3a2749ed-da5e-477a-9cd4-900035dc627b 396cbd83617d92f81f787b36c3749eb2 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal"} -C3N-00321.WGS.T C3N-00321 UCEC WGS tumor CPT0010260006 CPT0010260006.WholeGenome.RP-1303.bam 64158462864 BAM aligned CPTAC3 a473b06c-e585-4086-9870-a4e7884f1d2e 4e4bbff8e71e45329153eb6e81861b58 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor"} -C3N-00321.WGS.T.hg38 C3N-00321 UCEC WGS tumor CPT0010260006 1835754d-479f-4784-9083-921104cb7a68_gdc_realn.bam 95008872223 BAM harmonized CPTAC3 da271d9f-79b1-40d3-8ccb-43eb62566689 1e033cc2d812575f613c6b4deefaed17 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor"} -C3N-00321.WXS.N C3N-00321 UCEC WXS blood_normal CPT0010380002 CPT0010380002.WholeExome.RP-1303.bam 25539946290 BAM aligned CPTAC3 4618c73c-21c1-45a5-8354-40b8d85a82e5 8263122a3da19ce0a9a04d91ea2b8932 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal"} -C3N-00321.WXS.N.hg38 C3N-00321 UCEC WXS blood_normal CPT0010380002 5af7cd9f-e8dd-49af-ac6a-6badeed9fd8d_gdc_realn.bam 34930489201 BAM harmonized CPTAC3 215e2fdf-ca19-4def-9faf-067115d046d4 b390512e577dbb5a79e3e8b051b812f8 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal"} -C3N-00321.WXS.T C3N-00321 UCEC WXS tumor CPT0010260006 CPT0010260006.WholeExome.RP-1303.bam 26960772254 BAM aligned CPTAC3 5c324ae6-3212-436b-a15f-da22617a00ee aed397b96d4e0671ec27267ae6fd7a35 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor"} -C3N-00321.WXS.T.hg38 C3N-00321 UCEC WXS tumor CPT0010260006 1835754d-479f-4784-9083-921104cb7a68_gdc_realn.bam 36697192390 BAM harmonized CPTAC3 e1661ddf-c57f-4d99-b859-53baacfb1010 6f159f1a2b4b69a2d62767d1ea64b433 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor"} -C3N-00322.MethArray.Green.T C3N-00322 UCEC Methylation_Array tumor CPT0010430006 202184900149_R07C01_Grn.idat 13676256 IDAT Green NA CPTAC3 416acda6-b1d8-4f9a-8895-239202a1772a 21a93e0f47c268f8c476452ea0ee6f1d {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor"} -C3N-00322.MethArray.Red.T C3N-00322 UCEC Methylation_Array tumor CPT0010430006 202184900149_R07C01_Red.idat 13676256 IDAT Red NA CPTAC3 6382ceaa-72b8-4834-8263-94d57ec8213c 6d0e6bf0547afc7d44797c71ae026c37 {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor"} -C3N-00322.miRNA-Seq.S41_L002_R1.T C3N-00322 UCEC miRNA-Seq tumor CPT0010430009 181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L002_R1_001.unaln.bam 199951163 BAM S41_L002_R1 unaligned CPTAC3 247ce094-2ff3-4fd4-affe-e065a316496c 0dc29e9c8ba5ab7e58a8d63afa528641 {"aliquot_tag": "ALQ_7180df31", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00322.miRNA-Seq.T.hg38 C3N-00322 UCEC miRNA-Seq tumor CPT0010430009 74e8e745-6ea8-45ba-8a17-f5399b2d947d_mirnaseq_gdc_realn.bam 221374565 BAM harmonized CPTAC3 3ce10d87-ef9f-4402-8f23-0ab09905d18d bee6f337447858d5fa44f167fae3e8d9 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor"} -C3N-00322.RNA-Seq.chimeric.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.chimeric.gdc_realn.bam 142707640 BAM chimeric harmonized CPTAC3 4afb5b96-8f23-4c81-9343-c5b00a5d0846 2ef9aeb0cf55448a81682734453e3bd9 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor"} -C3N-00322.RNA-Seq.genomic.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.genomic.gdc_realn.bam 7374070456 BAM genomic harmonized CPTAC3 b048ddd7-1f6b-477d-8bac-fe8ad7ac9529 f0e0709d76588abf4d82e4f298261004 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor"} -C3N-00322.RNA-Seq.S5_L008_R1.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3553567243 FASTQ S5_L008_R1 unaligned CPTAC3 86f3b033-6491-4d96-bf41-f51ddfc6bb5b a08b316f957ec9853af165b83dbd0e08 {"aliquot_tag": "ALQ_7180df31", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00322.RNA-Seq.S5_L008_R2.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3675749783 FASTQ S5_L008_R2 unaligned CPTAC3 258cde18-4abd-4a5f-8140-23f1da45abdc 1f1520cd6cabb80f74632a01a2dd25ae {"aliquot_tag": "ALQ_7180df31", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00322.RNA-Seq.transcriptome.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.transcriptome.gdc_realn.bam 11777070503 BAM transcriptome harmonized CPTAC3 56d29159-71f1-4408-9318-29ea5417f7fe 4df0324547cbad18df0533eb1f0bfd48 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor"} -C3N-00322.WGS.N C3N-00322 UCEC WGS blood_normal CPT0077050001 CPT0077050001.WholeGenome.RP-1303.bam 64984269673 BAM aligned CPTAC3 3a8668fe-116d-4cf6-acc2-e7fc6231ac2c 1f7346e399431993bcbba3ab00286bdf {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00322.WGS.N.hg38 C3N-00322 UCEC WGS blood_normal CPT0077050001 57e730bf-2e32-4cf2-907b-f191778b6783_gdc_realn.bam 98300820182 BAM harmonized CPTAC3 c44027d8-b828-4d83-b821-f9c8b1dcd844 a36ee4ec1946045463ab1029d5830d87 {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00322.WGS.T C3N-00322 UCEC WGS tumor CPT0010430006 CPT0010430006.WholeGenome.RP-1303.bam 77617112749 BAM aligned CPTAC3 68084f36-cf82-4e3e-9124-b687a74ef7d1 0425e55200b13add78159c0b624e8d91 {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor"} -C3N-00322.WGS.T.hg38 C3N-00322 UCEC WGS tumor CPT0010430006 dfc8a271-3680-4e17-a894-06841e360ef2_gdc_realn.bam 115264101165 BAM harmonized CPTAC3 f3d0e5ea-1ad6-444e-884f-d198aab1f134 373538d34608b4ffd0825ac02db8c87d {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor"} -C3N-00322.WXS.N C3N-00322 UCEC WXS blood_normal CPT0077050001 CPT0077050001.WholeExome.RP-1303.bam 25062338241 BAM aligned CPTAC3 af241383-48c7-4492-8b90-c16b3fe72e2d 6ba0d32a84cb38bb9efd994abb3e0493 {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00322.WXS.N.hg38 C3N-00322 UCEC WXS blood_normal CPT0077050001 57e730bf-2e32-4cf2-907b-f191778b6783_gdc_realn.bam 33659078455 BAM harmonized CPTAC3 4989f40e-696b-41f9-bf68-f0b89e76f9b8 253535305aebc8c11aeb92c59ff7f789 {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00322.WXS.T C3N-00322 UCEC WXS tumor CPT0010430006 CPT0010430006.WholeExome.RP-1303.bam 26555742935 BAM aligned CPTAC3 799392c1-a0d2-420b-8743-7923c6b3e65d 35b2f5c2f14bf855cc0dff1e842e9d2e {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor"} -C3N-00322.WXS.T.hg38 C3N-00322 UCEC WXS tumor CPT0010430006 dfc8a271-3680-4e17-a894-06841e360ef2_gdc_realn.bam 36369247194 BAM harmonized CPTAC3 a60a9f62-9124-4a9d-8c28-1df22de7e053 8113a911632e375aeec21269b8df4c66 {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor"} -C3N-00323.MethArray.Green.T C3N-00323 UCEC Methylation_Array tumor CPT0010610006 202176290147_R04C01_Grn.idat 13676215 IDAT Green NA CPTAC3 8efe791a-69a5-4ea2-a3fb-15c9eae19910 f8f00b5828a9b159cd00de5c98d8206b {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor"} -C3N-00323.MethArray.Red.T C3N-00323 UCEC Methylation_Array tumor CPT0010610006 202176290147_R04C01_Red.idat 13676215 IDAT Red NA CPTAC3 e1665079-a024-4567-958a-4a24c7bc000a e2d160d6a425ff9026c0c978c751f467 {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor"} -C3N-00323.miRNA-Seq.S42_L002_R1.T C3N-00323 UCEC miRNA-Seq tumor CPT0010610009 181012_UNC32-K00270_0124_AH223CBBXY_CGTACG_S42_L002_R1_001.unaln.bam 219630348 BAM S42_L002_R1 unaligned CPTAC3 69533d29-4d53-4530-9b45-7c13047d2dcf b5aea0aedc80d1c2f3b6d39bc073fcf5 {"aliquot_tag": "ALQ_46882d5a", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00323.miRNA-Seq.T.hg38 C3N-00323 UCEC miRNA-Seq tumor CPT0010610009 efa0be95-7c16-4a53-9da7-03ec3c0f5aab_mirnaseq_gdc_realn.bam 241137160 BAM harmonized CPTAC3 a3cb5e24-d661-4455-a4dc-c5d1209b2c24 fa908c0c658a02b31425dad8e4c6b3df {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor"} -C3N-00323.RNA-Seq.chimeric.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.chimeric.gdc_realn.bam 257455491 BAM chimeric harmonized CPTAC3 e0b40769-3617-40d0-958f-db8fcd2f3959 91c1905b2dcea37a38c47e031422b81a {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor"} -C3N-00323.RNA-Seq.genomic.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.genomic.gdc_realn.bam 9383791902 BAM genomic harmonized CPTAC3 4b04fc45-9a46-4c1a-b9c2-b2444bce8c1a dd7c4a8296f9ae5c7c034540cfaf87b2 {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor"} -C3N-00323.RNA-Seq.S6_L008_R1.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4395483954 FASTQ S6_L008_R1 unaligned CPTAC3 6c14578c-92ff-4085-a8d8-d5122ff4fd11 6d0b2ee628cef309c705371ee9041e38 {"aliquot_tag": "ALQ_46882d5a", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00323.RNA-Seq.S6_L008_R2.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4750813976 FASTQ S6_L008_R2 unaligned CPTAC3 727a9891-1116-4c77-9787-a08111f0b3e8 2dbab226164b1ad4aaaa77fc12bc6429 {"aliquot_tag": "ALQ_46882d5a", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00323.RNA-Seq.transcriptome.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.transcriptome.gdc_realn.bam 8924037157 BAM transcriptome harmonized CPTAC3 41dc37e8-4c83-4e30-9331-86fb37e64bf4 7019615309ffd912f0282552e8e88f89 {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor"} -C3N-00323.WGS.N C3N-00323 UCEC WGS blood_normal CPT0010760002 CPT0010760002.WholeGenome.RP-1303.bam 66268160978 BAM aligned CPTAC3 cd876b39-d4dd-4757-81c2-b8156a27d5e7 c91b44882fd7e686c0762a1791c96a2a {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal"} -C3N-00323.WGS.N.hg38 C3N-00323 UCEC WGS blood_normal CPT0010760002 577c96fe-53aa-4c2d-9410-263e818b88d0_gdc_realn.bam 94883553811 BAM harmonized CPTAC3 f14df642-0372-4fce-98ae-e94369a425cd 601128f38961d30abbcd604fd9d684ca {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal"} -C3N-00323.WGS.T C3N-00323 UCEC WGS tumor CPT0010610006 CPT0010610006.WholeGenome.RP-1303.bam 62764860319 BAM aligned CPTAC3 04badc97-81c6-473e-ba05-4fe3408f32a0 7dc605a70815b59f4291d18e0833474a {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor"} -C3N-00323.WGS.T.hg38 C3N-00323 UCEC WGS tumor CPT0010610006 5b342ae2-f869-4fb5-af0d-556559e43e54_gdc_realn.bam 91892826262 BAM harmonized CPTAC3 81a11798-0812-4fda-81fb-43b01a15f562 f2ac375949e870290f59318f760576d7 {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor"} -C3N-00323.WXS.N C3N-00323 UCEC WXS blood_normal CPT0010760002 CPT0010760002.WholeExome.RP-1303.bam 28155463544 BAM aligned CPTAC3 3db8c0a1-bd86-4421-b9f7-c03931cf68fd 2ed155ac613cb209acbe163374025e42 {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal"} -C3N-00323.WXS.N.hg38 C3N-00323 UCEC WXS blood_normal CPT0010760002 577c96fe-53aa-4c2d-9410-263e818b88d0_gdc_realn.bam 39014786730 BAM harmonized CPTAC3 37e704ce-f3af-4ef0-ad64-d94fad73aa39 736762283fb629c03e4a612a44aec4b5 {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal"} -C3N-00323.WXS.T C3N-00323 UCEC WXS tumor CPT0010610006 CPT0010610006.WholeExome.RP-1303.bam 24484798521 BAM aligned CPTAC3 02c2e0f0-0f10-4f0c-91cf-15763338f0cf 136fcbd674d886d4b97d294407ffd017 {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor"} -C3N-00323.WXS.T.hg38 C3N-00323 UCEC WXS tumor CPT0010610006 5b342ae2-f869-4fb5-af0d-556559e43e54_gdc_realn.bam 33453221954 BAM harmonized CPTAC3 ac736b73-851b-457f-a05b-ccd1cda0cf77 fed2895a3c1e63357134158c84c5d77e {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor"} -C3N-00324.MethArray.Green.T C3N-00324 UCEC Methylation_Array tumor CPT0010820006 202178770006_R01C01_Grn.idat 13676249 IDAT Green NA CPTAC3 138f72a8-57b9-48ab-9842-7f2d243cbc19 da61621fe53068fc7506079227a1e43d {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor"} -C3N-00324.MethArray.Red.T C3N-00324 UCEC Methylation_Array tumor CPT0010820006 202178770006_R01C01_Red.idat 13676249 IDAT Red NA CPTAC3 4fb6c65b-9fdf-4f48-a103-692394ba50b8 34ebc75b856ced9c6d51b7a55d5e2f01 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor"} -C3N-00324.miRNA-Seq.S43_L003_R1.T C3N-00324 UCEC miRNA-Seq tumor CPT0010820009 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L003_R1_001.unaln.bam 202782331 BAM S43_L003_R1 unaligned CPTAC3 9f755b11-1790-40b8-80be-4a74edf2e3a2 f8399cfe084dbdc5b25854c98467839c {"aliquot_tag": "ALQ_3b2236fa", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00324.miRNA-Seq.T.hg38 C3N-00324 UCEC miRNA-Seq tumor CPT0010820009 06ea7580-e066-43f2-8844-f67bea171e0a_mirnaseq_gdc_realn.bam 221672750 BAM harmonized CPTAC3 21b9cc35-b35b-41f8-b13f-1c1658e0311b 1a10ecf126e0011d67f7e9b4ad3855cc {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor"} -C3N-00324.RNA-Seq.chimeric.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.chimeric.gdc_realn.bam 174969564 BAM chimeric harmonized CPTAC3 4de3f70e-b147-4b59-afff-db4155178f94 dffd58d40be277d868c2146a6d576c55 {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor"} -C3N-00324.RNA-Seq.genomic.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.genomic.gdc_realn.bam 7385026644 BAM genomic harmonized CPTAC3 1533a36c-0bda-4495-a816-bc005706fed7 121b590cac4fff27c76948da0b1bf15c {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor"} -C3N-00324.RNA-Seq.S21_L008_R1.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R1_001.fastq.gz 3609157312 FASTQ S21_L008_R1 unaligned CPTAC3 a76e636b-9fd0-4cf2-b0c6-78ed366d7c3d a138b6d49e9e4c9e5afdb95a36cf65c3 {"aliquot_tag": "ALQ_3b2236fa", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00324.RNA-Seq.S21_L008_R2.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R2_001.fastq.gz 3924023983 FASTQ S21_L008_R2 unaligned CPTAC3 ced11262-32d0-42c6-a91f-2d3f801ed551 5fe9d62a6bd4824c880d7cde8aef546f {"aliquot_tag": "ALQ_3b2236fa", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00324.RNA-Seq.transcriptome.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.transcriptome.gdc_realn.bam 9199533680 BAM transcriptome harmonized CPTAC3 a58ca1e1-41c5-4e11-8ff9-210cd8fed79e 024cd34eb3ece4da58e9d8a85c3bcc2b {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor"} -C3N-00324.WGS.N C3N-00324 UCEC WGS blood_normal CPT0010950002 CPT0010950002.WholeGenome.RP-1303.bam 62350240534 BAM aligned CPTAC3 75382ed6-be8d-438d-b0c6-390078fafbe9 8100f2fd3d01d4cb31398bcbb486b98c {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00324.WGS.N.hg38 C3N-00324 UCEC WGS blood_normal CPT0010950002 cd24c578-62a3-4d17-bf84-b1c439977cce_gdc_realn.bam 88905044030 BAM harmonized CPTAC3 913cfbfa-c656-4161-b42d-7d343b7cffeb 41f8a0e926d0b3739723da42d1bc8976 {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00324.WGS.T C3N-00324 UCEC WGS tumor CPT0010820006 CPT0010820006.WholeGenome.RP-1303.bam 71103573653 BAM aligned CPTAC3 fe34fdee-3693-4f19-9082-b205d636d838 d39dab888823bec32f13d02e6d507661 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor"} -C3N-00324.WGS.T.hg38 C3N-00324 UCEC WGS tumor CPT0010820006 5142f7db-1b0f-466b-bcb3-9704940ffdab_gdc_realn.bam 102894798577 BAM harmonized CPTAC3 417609db-9760-41da-af19-8258e8ab57ea 4f55f43202fbf317f6122d47539d6da6 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor"} -C3N-00324.WXS.N C3N-00324 UCEC WXS blood_normal CPT0010950002 CPT0010950002.WholeExome.RP-1303.bam 30759604325 BAM aligned CPTAC3 076629d4-e94a-4038-b307-a739802370c1 e9d35bc16b5de9c3192c65b1c78a87c1 {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00324.WXS.N.hg38 C3N-00324 UCEC WXS blood_normal CPT0010950002 cd24c578-62a3-4d17-bf84-b1c439977cce_gdc_realn.bam 42797294317 BAM harmonized CPTAC3 1ce30c13-0c75-412b-86ee-5a951e7efb92 e1d0d41885ba0c58a53412a4b5322732 {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00324.WXS.T C3N-00324 UCEC WXS tumor CPT0010820006 CPT0010820006.WholeExome.RP-1303.bam 28692289014 BAM aligned CPTAC3 8e136610-d0b3-4cb7-9255-864fc245c501 63f6bc39cc55557ce52f0e9131304384 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor"} -C3N-00324.WXS.T.hg38 C3N-00324 UCEC WXS tumor CPT0010820006 5142f7db-1b0f-466b-bcb3-9704940ffdab_gdc_realn.bam 39707775955 BAM harmonized CPTAC3 0aeb075f-7fad-4391-8773-a716e053eb2b 2b2dd28813c1aeacb124a2bb8320a671 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor"} -C3N-00326.MethArray.Green.T C3N-00326 UCEC Methylation_Array tumor CPT0022530006 202163550007_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1332c544-c65a-485c-84e2-03b449f575c3 2781cfd3afe5e30f3ee83d855ae48475 {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor"} -C3N-00326.MethArray.Red.T C3N-00326 UCEC Methylation_Array tumor CPT0022530006 202163550007_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 8b9676df-6b50-4c2f-9e34-e7428cf2f55c f08734ab2d71147269b203b420908f7b {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor"} -C3N-00326.miRNA-Seq.S151_L008_R1.T C3N-00326 UCEC miRNA-Seq tumor CPT0022530009 190828_UNC32-K00270_0200_BH7GVJBBXY_CACCGG_S151_L008_R1_001.unaln.bam 302263559 BAM S151_L008_R1 unaligned CPTAC3 2ec1d3a6-6eb9-4549-923b-c9c0ed518743 25b29324668867b3ff2269633b8f07ca {"aliquot_tag": "ALQ_a3cc1a5e", "sample": "S151", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00326.miRNA-Seq.T.hg38 C3N-00326 UCEC miRNA-Seq tumor CPT0022530009 3f2bbbfd-2825-4b8e-9efe-e7c02019e804_mirnaseq_gdc_realn.bam 325626164 BAM harmonized CPTAC3 1c86a935-7106-48a4-8ccb-a9e5eaa48daa 97bdc974ba096163addabae1b07fc8a3 {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor"} -C3N-00326.RNA-Seq.chimeric.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.chimeric.gdc_realn.bam 68784250 BAM chimeric harmonized CPTAC3 5225e16e-36ea-4995-8678-5a85b7c180cc fac70cf029327da16882c16405581a9e {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor"} -C3N-00326.RNA-Seq.genomic.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.genomic.gdc_realn.bam 7620579349 BAM genomic harmonized CPTAC3 7fbd5556-5c4b-48e8-9a7e-8bcffe81e78f 191096aad5d554fc1c72ea2a62aff391 {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor"} -C3N-00326.RNA-Seq.S8_L008_R1.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R1_001.fastq.gz 3688649938 FASTQ S8_L008_R1 unaligned CPTAC3 fd7cf324-b89a-4558-a03f-d64ef2be88ff c67a8034f0b19fb5d78cba87fbd4fd3c {"aliquot_tag": "ALQ_a3cc1a5e", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00326.RNA-Seq.S8_L008_R2.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R2_001.fastq.gz 4012581715 FASTQ S8_L008_R2 unaligned CPTAC3 90917b44-0072-4cec-bd84-9dd8885045f0 7ddd040fc6c2999b9f4697eb7d16d129 {"aliquot_tag": "ALQ_a3cc1a5e", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00326.RNA-Seq.transcriptome.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.transcriptome.gdc_realn.bam 9125657703 BAM transcriptome harmonized CPTAC3 bf956393-44b9-4274-aa3f-16f9b6dad62a 8a67c53225954711a5863feb49d8505a {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor"} -C3N-00326.WGS.N C3N-00326 UCEC WGS blood_normal CPT0019690002 CPT0019690002.WholeGenome.RP-1303.bam 57655926001 BAM aligned CPTAC3 3d88a08d-2067-4b56-9053-6b500b54ce6b 13742c2a194e93a11dbbb80a8dceb679 {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00326.WGS.N.hg38 C3N-00326 UCEC WGS blood_normal CPT0019690002 fe5e1dd1-ea01-4ff5-8019-c8d372a33339_gdc_realn.bam 82547038228 BAM harmonized CPTAC3 1d0fce2e-e790-4ff1-880b-67ecb7234d4b 2e54ae7c4b991c83a6f82764f8371751 {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00326.WGS.T C3N-00326 UCEC WGS tumor CPT0022530006 CPT0022530006.WholeGenome.RP-1303.bam 63034907834 BAM aligned CPTAC3 06ee7b56-c8a6-4479-b2cb-b4096679ebca 1b9e6904d05ddc6bb818605562a81d03 {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor"} -C3N-00326.WGS.T.hg38 C3N-00326 UCEC WGS tumor CPT0022530006 3fa66b09-0381-4234-9176-e70c8b4f7338_gdc_realn.bam 90645736751 BAM harmonized CPTAC3 0dc37b55-fee6-4705-beab-1d4dfa5b3fd4 5e013f8b1376802d22804a49f9930cdf {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor"} -C3N-00326.WXS.N C3N-00326 UCEC WXS blood_normal CPT0019690002 CPT0019690002.WholeExome.RP-1303.bam 27383726594 BAM aligned CPTAC3 ce1d5839-15dd-43bd-9ccd-faf8924ccc92 9ec1af99e7583a3fd24a926984323327 {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00326.WXS.N.hg38 C3N-00326 UCEC WXS blood_normal CPT0019690002 fe5e1dd1-ea01-4ff5-8019-c8d372a33339_gdc_realn.bam 37457429989 BAM harmonized CPTAC3 4971ed33-2da8-4d91-97c1-31564e3e1796 98e27c7109f2f88b09259680d700e66f {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00326.WXS.T C3N-00326 UCEC WXS tumor CPT0022530006 CPT0022530006.WholeExome.RP-1303.bam 27340614152 BAM aligned CPTAC3 b2a6131b-ac34-46fc-a70e-709411f20121 d4c3e432b8d8463352281f83bb3959ca {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor"} -C3N-00326.WXS.T.hg38 C3N-00326 UCEC WXS tumor CPT0022530006 3fa66b09-0381-4234-9176-e70c8b4f7338_gdc_realn.bam 37239631643 BAM harmonized CPTAC3 dad5a4fb-980f-4fac-a55f-19f43b41478b b18d35ecc615273a6508fd6e7ca836db {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor"} -C3N-00328.MethArray.Green.T C3N-00328 UCEC Methylation_Array tumor CPT0019840009 202184900104_R03C01_Grn.idat 13676256 IDAT Green NA CPTAC3 f05d1b8b-2fbe-4a14-9144-8e300d2b7198 17d0548867868dae50652437eabfb6b4 {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor"} -C3N-00328.MethArray.Red.T C3N-00328 UCEC Methylation_Array tumor CPT0019840009 202184900104_R03C01_Red.idat 13676256 IDAT Red NA CPTAC3 5557387d-4f17-4697-bb1d-66e70d6323b2 b810637f768428039ef0930badcb52ac {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor"} -C3N-00328.miRNA-Seq.S31_L004_R1.T C3N-00328 UCEC miRNA-Seq tumor CPT0019840006 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L004_R1_001.unaln.bam 186912880 BAM S31_L004_R1 unaligned CPTAC3 9b200823-7988-49f3-8378-5b8abec7796f 5339c2f9ba88fb38d7e7c537634975c5 {"aliquot_tag": "ALQ_b1459b18", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00328.miRNA-Seq.T.hg38 C3N-00328 UCEC miRNA-Seq tumor CPT0019840006 4fc50a93-10d2-412b-a54b-7d79c27d3f86_mirnaseq_gdc_realn.bam 202287482 BAM harmonized CPTAC3 abf1208e-b3a8-4147-b011-effeaa63b88c 74b865655cd81d54e90a5af4803427e4 {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor"} -C3N-00328.RNA-Seq.chimeric.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.chimeric.gdc_realn.bam 121145120 BAM chimeric harmonized CPTAC3 62ebcc3e-d655-46bb-9ecc-babc3f8b2f57 0abf07369c22e6bcc21d38cbe2138313 {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor"} -C3N-00328.RNA-Seq.genomic.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.genomic.gdc_realn.bam 7896192029 BAM genomic harmonized CPTAC3 ebc26da6-b81f-45c0-9f79-d15a6ece9484 33770bb0fa2cf7d946c4afb3cb9743a0 {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor"} -C3N-00328.RNA-Seq.S16_L004_R1.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R1_001.fastq.gz 3959039547 FASTQ S16_L004_R1 unaligned CPTAC3 1409ef12-3919-4b88-b5b8-4a85576fadc7 d375125429815d99bd1a17a72aef7342 {"aliquot_tag": "ALQ_b1459b18", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00328.RNA-Seq.S16_L004_R2.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R2_001.fastq.gz 4315617697 FASTQ S16_L004_R2 unaligned CPTAC3 fba3daa2-3a66-4af6-aa02-ff5cb8d534eb acfc8732d00ec3a77175dcf29d0943fd {"aliquot_tag": "ALQ_b1459b18", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00328.RNA-Seq.transcriptome.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.transcriptome.gdc_realn.bam 9917902583 BAM transcriptome harmonized CPTAC3 67e80ee4-cb24-4439-9f3c-aa14470556f5 02520de4c4cbebac6e3f2ce82d91d4cd {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor"} -C3N-00328.WGS.N C3N-00328 UCEC WGS blood_normal CPT0020410002 CPT0020410002.WholeGenome.RP-1303.bam 69792154820 BAM aligned CPTAC3 2ba4680d-fc29-473d-9be9-a07d458f26c9 0e756d6cd37ba28c47d5de5231e5a82e {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00328.WGS.N.hg38 C3N-00328 UCEC WGS blood_normal CPT0020410002 290e3a66-502c-40c7-b6cc-e4783b31bf23_gdc_realn.bam 102291829553 BAM harmonized CPTAC3 bdfcac24-2bb8-471f-ab8b-6fe9f1f10c3b 1eff9678bf2f9d6331aac92384e68b0f {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00328.WGS.T C3N-00328 UCEC WGS tumor CPT0019840009 CPT0019840009.WholeGenome.RP-1303.bam 69953212575 BAM aligned CPTAC3 ae967c0a-82aa-4f4c-ae6c-d990519e95fa 8d28befe329f0d602fde3d638b5ac542 {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor"} -C3N-00328.WGS.T.hg38 C3N-00328 UCEC WGS tumor CPT0019840009 4aec9b8e-d049-435a-8d3f-e17ee190dd8a_gdc_realn.bam 101067020272 BAM harmonized CPTAC3 6ba9f990-4d24-43fb-bf5b-1858a0146e7e 4ce4bf12faaafaffda45f419e8b5b0de {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor"} -C3N-00328.WXS.N C3N-00328 UCEC WXS blood_normal CPT0020410002 CPT0020410002.WholeExome.RP-1303.bam 30634502378 BAM aligned CPTAC3 ff4dbd26-ddd1-43ca-96b9-7b4b849268b6 81c166446d72df1a38113b2f86e5954f {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00328.WXS.N.hg38 C3N-00328 UCEC WXS blood_normal CPT0020410002 290e3a66-502c-40c7-b6cc-e4783b31bf23_gdc_realn.bam 42755736362 BAM harmonized CPTAC3 92a6ecef-93d2-4e81-ba10-8c6fa21e412e 51bd93ee130c65e2930d826f7410ae25 {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00328.WXS.T C3N-00328 UCEC WXS tumor CPT0019840009 CPT0019840009.WholeExome.RP-1303.bam 28123357820 BAM aligned CPTAC3 57ca5aaa-f52d-46f0-adb6-9cae7b4afeab 581f5559673c24e316299626b375fd81 {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor"} -C3N-00328.WXS.T.hg38 C3N-00328 UCEC WXS tumor CPT0019840009 4aec9b8e-d049-435a-8d3f-e17ee190dd8a_gdc_realn.bam 38527121565 BAM harmonized CPTAC3 c1d2d417-5a50-4534-8ae1-fc69aca45772 4967c2fdf0f28cf0e507bebcf0b4f6ce {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor"} -C3N-00333.ANN_5748e66e.WGS.N C3N-00333 UCEC WGS blood_normal CPT0011100002 CPT0011100002.WholeGenome.RP-1303.bam 62707497278 BAM aligned CPTAC3 96d7fbca-f386-4e59-bd26-a6476f2ff9ee f16893e7632210e855f2c1f58c51ca13 {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00333.ANN_5748e66e.WGS.N.hg38 C3N-00333 UCEC WGS blood_normal CPT0011100002 d6e45feb-9d72-474c-9d5b-a0b8d6c4dc8c_gdc_realn.bam 91414830757 BAM harmonized CPTAC3 1fdfd239-41aa-4c8d-8b8b-c84d4b525d67 e1ff420187183e10157ff4a61f87dcfd {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00333.ANN_5748e66e.WXS.N C3N-00333 UCEC WXS blood_normal CPT0011100002 CPT0011100002.WholeExome.RP-1303.bam 28432273162 BAM aligned CPTAC3 59cf4caf-2c41-4390-93cf-51f4dbeef3af 3b82dadf77131871e0f8e59e71c1b84e {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00333.ANN_5748e66e.WXS.N.hg38 C3N-00333 UCEC WXS blood_normal CPT0011100002 d6e45feb-9d72-474c-9d5b-a0b8d6c4dc8c_gdc_realn.bam 38875383146 BAM harmonized CPTAC3 cf748e44-e144-4034-ad2e-99d431d3be22 ca3af28280bb7e862bfc98a65b5fda4e {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-00333.ANN_9b79f1d2.MethArray.Green.T C3N-00333 UCEC Methylation_Array tumor CPT0011000006 202178770143_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 763958ac-1799-4e0d-afb3-309f81cdc6bb 8a020927457e1847bd2bb1a6263ed117 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00333.ANN_9b79f1d2.MethArray.Red.T C3N-00333 UCEC Methylation_Array tumor CPT0011000006 202178770143_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 ace92bf5-0386-4e08-8aac-6dd8ba791427 41d26d995f985c13aec2dadc93552494 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00333.ANN_9b79f1d2.WGS.T C3N-00333 UCEC WGS tumor CPT0011000006 CPT0011000006.WholeGenome.RP-1303.bam 64713010105 BAM aligned CPTAC3 ec57c574-59cf-40a3-9793-cdaf519abc29 fa3ab00d1a793878f1faed480609fdd2 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00333.ANN_9b79f1d2.WGS.T.hg38 C3N-00333 UCEC WGS tumor CPT0011000006 deec3429-33f4-4946-a550-66acc74ee372_gdc_realn.bam 95053986433 BAM harmonized CPTAC3 3c2dee34-a0e2-4ee0-9ed1-3bb9405c0070 0f676a29275b2127edd72d692bdae400 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00333.ANN_9b79f1d2.WXS.T C3N-00333 UCEC WXS tumor CPT0011000006 CPT0011000006.WholeExome.RP-1303.bam 24938539301 BAM aligned CPTAC3 9deb7257-8b5f-4f3a-81f5-13f84026f6f9 a84910ad538040c434b5dbb3378ac508 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00333.ANN_9b79f1d2.WXS.T.hg38 C3N-00333 UCEC WXS tumor CPT0011000006 deec3429-33f4-4946-a550-66acc74ee372_gdc_realn.bam 33961919756 BAM harmonized CPTAC3 a8e8fff3-176e-4b6d-a138-ce8079f4951c bccb95206c87de97f6a29c3ad72c596c {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00333.miRNA-Seq.A.hg38 C3N-00333 UCEC miRNA-Seq tissue_normal CPT0011020005 66702502-f018-407d-9599-e6a56426bd9e_mirnaseq_gdc_realn.bam 295518634 BAM harmonized CPTAC3 4d893e44-fdd9-4693-ad26-a735da8821d7 a13d22c3d855295975517e38f782fd82 {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00333.miRNA-Seq.S16_L007_R1.A C3N-00333 UCEC miRNA-Seq tissue_normal CPT0011020005 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L007_R1_001.unaln.bam 257167650 BAM S16_L007_R1 unaligned CPTAC3 6ebf4622-e23e-4d45-bca3-c49a599bb3c5 ac128e23e832ad0fc637dab3ead7be99 {"aliquot_tag": "ALQ_78b0f308", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00333.miRNA-Seq.S44_L003_R1.T C3N-00333 UCEC miRNA-Seq tumor CPT0011000009 181012_UNC32-K00270_0124_AH223CBBXY_GGTAGC_S44_L003_R1_001.unaln.bam 247649696 BAM S44_L003_R1 unaligned CPTAC3 f5830d0b-f49c-4b79-ad31-dbc65f760ccc 596f65272dad9c9be754b0330f72e737 {"aliquot_tag": "ALQ_bc6ec43", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00333.miRNA-Seq.T.hg38 C3N-00333 UCEC miRNA-Seq tumor CPT0011000009 0a9fc2fe-4b9d-485a-b7a9-f65ac2ef28e7_mirnaseq_gdc_realn.bam 269966713 BAM harmonized CPTAC3 802bf122-3cfd-4cea-b1ec-4fff5ae7beb5 ff6899e193f47c9af2aa7c8613d6fa3f {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor"} -C3N-00333.RNA-Seq.chimeric.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.chimeric.gdc_realn.bam 83062772 BAM chimeric harmonized CPTAC3 d1e569f4-700f-4803-9f0e-81a455e6f9f9 af0ac7d453e7662384815dabc6579edc {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00333.RNA-Seq.chimeric.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.chimeric.gdc_realn.bam 127161390 BAM chimeric harmonized CPTAC3 02fef471-5056-46e8-801e-3c24b87a3892 79125bdf048391a57bc3de5a7760b9a9 {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor"} -C3N-00333.RNA-Seq.genomic.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.genomic.gdc_realn.bam 8387959719 BAM genomic harmonized CPTAC3 c8639d9e-b917-4b09-b704-35d04299be8f 67b5f48111c348e73fbbe25cd0c06efe {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00333.RNA-Seq.genomic.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.genomic.gdc_realn.bam 8667903647 BAM genomic harmonized CPTAC3 28e9d054-9b01-4abb-b168-af0ce293ca95 eaa21332d01f053eaf6431998aa8583d {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor"} -C3N-00333.RNA-Seq.S22_L008_R1.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R1_001.fastq.gz 4073011700 FASTQ S22_L008_R1 unaligned CPTAC3 46b971bf-81ed-4c18-9272-3e65823123e2 b05ac9d74a565499f1b9676c25ad05c9 {"aliquot_tag": "ALQ_bc6ec43", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00333.RNA-Seq.S22_L008_R2.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R2_001.fastq.gz 4348896874 FASTQ S22_L008_R2 unaligned CPTAC3 ae764c5a-f0ca-4a2e-b08e-ef1a65ddfe20 5fab770863eb22a663e333467336a837 {"aliquot_tag": "ALQ_bc6ec43", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00333.RNA-Seq.S5_L002_R1.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R1_001.fastq.gz 4161818501 FASTQ S5_L002_R1 unaligned CPTAC3 3b0cb9d5-e735-43db-81bc-dd41c5404e88 07a162c0bf490402451010c729106924 {"aliquot_tag": "ALQ_78b0f308", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00333.RNA-Seq.S5_L002_R2.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R2_001.fastq.gz 4173499576 FASTQ S5_L002_R2 unaligned CPTAC3 2e65e11f-f0c6-43e1-a97f-42beb6bcf2e9 ba37e360dc7829bcf7279f86ae11fd6e {"aliquot_tag": "ALQ_78b0f308", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00333.RNA-Seq.transcriptome.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.transcriptome.gdc_realn.bam 9762539265 BAM transcriptome harmonized CPTAC3 caa533d8-0ae6-4415-9fe7-17c0f3f4b67a ee530dd29dde2a5db479bcc85f373dcb {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00333.RNA-Seq.transcriptome.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.transcriptome.gdc_realn.bam 10865660521 BAM transcriptome harmonized CPTAC3 0e052b35-eb2c-412c-80a8-34df49d292ce ea409ba57c360bab29b0fcf7783238e7 {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor"} -C3N-00334.MethArray.Green.T C3N-00334 UCEC Methylation_Array tumor CPT0018570006 202163550076_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a40eb019-0924-48ba-bd2f-7c418248895e c3db7a73d84281e44b3aabcfc4c6f841 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor"} -C3N-00334.MethArray.Red.T C3N-00334 UCEC Methylation_Array tumor CPT0018570006 202163550076_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 874636d0-e6ca-46f3-bff9-4a3d06884913 57502bd78527e028665be63aea2d2f82 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor"} -C3N-00334.miRNA-Seq.S3_L003_R1.T C3N-00334 UCEC miRNA-Seq tumor CPT0018570009 181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L003_R1_001.unaln.bam 176382643 BAM S3_L003_R1 unaligned CPTAC3 7121a1a5-158e-4b8a-a9ae-b15452f69f8a a7348513c6798ba8d79d48c076721199 {"aliquot_tag": "ALQ_7cb3e433", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00334.miRNA-Seq.T.hg38 C3N-00334 UCEC miRNA-Seq tumor CPT0018570009 201ca10a-5b76-4b10-b971-60cbe7700eb6_mirnaseq_gdc_realn.bam 193479454 BAM harmonized CPTAC3 88a17809-5e4e-480f-925d-1dce5022ad80 9ab19d3f339a3ac9d18bd1e7f7ef507e {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor"} -C3N-00334.RNA-Seq.chimeric.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.chimeric.gdc_realn.bam 130838339 BAM chimeric harmonized CPTAC3 db5723ad-7294-4fa7-9722-57b57a683db5 c3e72bb153f5de5115387a5f156a0940 {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor"} -C3N-00334.RNA-Seq.genomic.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.genomic.gdc_realn.bam 7043123397 BAM genomic harmonized CPTAC3 235a3bea-425a-487d-9175-fc5c861ee99c ade394bf4cfcdf117ca75f55f7bfa664 {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor"} -C3N-00334.RNA-Seq.S14_L006_R1.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R1_001.fastq.gz 3581021854 FASTQ S14_L006_R1 unaligned CPTAC3 d92fcd95-f416-4785-aca7-f8c53a3099b1 1a7bc2169cff66424185a28b3efba90a {"aliquot_tag": "ALQ_7cb3e433", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00334.RNA-Seq.S14_L006_R2.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R2_001.fastq.gz 4015136626 FASTQ S14_L006_R2 unaligned CPTAC3 18275a18-20bd-45fc-af1e-e340d86a97c6 7abf5400d7fcd146a1cbf97a54e04953 {"aliquot_tag": "ALQ_7cb3e433", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00334.RNA-Seq.transcriptome.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.transcriptome.gdc_realn.bam 9037451204 BAM transcriptome harmonized CPTAC3 fab621ef-7690-4b39-8e80-3925281a9282 7b605c1307da63a68dbff1ab08268c51 {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor"} -C3N-00334.WGS.N C3N-00334 UCEC WGS blood_normal CPT0018720002 CPT0018720002.WholeGenome.RP-1303.bam 74217601075 BAM aligned CPTAC3 70eae70f-26a8-4d36-a323-cf8848955952 8761a5015cc1af5b12b2cefed72a9d83 {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00334.WGS.N.hg38 C3N-00334 UCEC WGS blood_normal CPT0018720002 20e9a00b-8692-41fd-b34b-3d1028376f13_gdc_realn.bam 106743124832 BAM harmonized CPTAC3 c11b3b83-b681-4e44-a9ac-7dd3a760752c d8c9d39d605954342c4b9a5d9a4f0fd4 {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00334.WGS.T C3N-00334 UCEC WGS tumor CPT0018570006 CPT0018570006.WholeGenome.RP-1303.bam 64733132800 BAM aligned CPTAC3 d2c09bca-9ec2-4561-9c8c-7e6ee68e5eb8 4799a373cbcf07432d87a615c0433741 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor"} -C3N-00334.WGS.T.hg38 C3N-00334 UCEC WGS tumor CPT0018570006 0080c2ce-959e-42cc-8cbb-9ba2a91410e3_gdc_realn.bam 95130864531 BAM harmonized CPTAC3 6cc33674-26cb-4b7d-abc1-76081bda58ba ac9d432f2195f84c961d2a4dd08ddd50 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor"} -C3N-00334.WXS.N C3N-00334 UCEC WXS blood_normal CPT0018720002 CPT0018720002.WholeExome.RP-1303.bam 26336838968 BAM aligned CPTAC3 698bdc5a-57cd-446d-999d-d4982ebb1904 0d1609609677a116009ca1354db097f4 {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00334.WXS.N.hg38 C3N-00334 UCEC WXS blood_normal CPT0018720002 20e9a00b-8692-41fd-b34b-3d1028376f13_gdc_realn.bam 36115144269 BAM harmonized CPTAC3 5c7c8278-74e6-4c50-9f43-e1977bc3bc4a 38f8360de1c772b926acaaf07315d36e {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00334.WXS.T C3N-00334 UCEC WXS tumor CPT0018570006 CPT0018570006.WholeExome.RP-1303.bam 26958814572 BAM aligned CPTAC3 8f11fde6-a7f1-47bc-acb8-b441627fc49b cfe8d46da44a8a35e3e199d0970955ac {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor"} -C3N-00334.WXS.T.hg38 C3N-00334 UCEC WXS tumor CPT0018570006 0080c2ce-959e-42cc-8cbb-9ba2a91410e3_gdc_realn.bam 37329836027 BAM harmonized CPTAC3 a6837fa3-b3d6-491e-91eb-e0b72fcbc5d8 cc4643f82a071652bb29fa9d4f2602ba {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor"} -C3N-00335.MethArray.Green.T C3N-00335 UCEC Methylation_Array tumor CPT0018790006 202178770008_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f9026b2a-d941-4a5c-9b5d-ac35e1c11064 6cd02d0fe35ddb2a5477cb08fcec6f6f {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor"} -C3N-00335.MethArray.Red.T C3N-00335 UCEC Methylation_Array tumor CPT0018790006 202178770008_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 78238b15-f06c-4c1b-b3f5-4b4a93728c4e 0c26d22a648a4d052df5b6511f15ac47 {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor"} -C3N-00335.miRNA-Seq.S4_L003_R1.T C3N-00335 UCEC miRNA-Seq tumor CPT0018790009 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L003_R1_001.unaln.bam 233646266 BAM S4_L003_R1 unaligned CPTAC3 2094a704-5203-4cd1-8577-f818ddc7d9b0 22c2575cc491d155fc58e6e9e0856a4a {"aliquot_tag": "ALQ_8e4bfb59", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00335.miRNA-Seq.T.hg38 C3N-00335 UCEC miRNA-Seq tumor CPT0018790009 14f10910-4d4c-4546-89fe-7f0a29621689_mirnaseq_gdc_realn.bam 254851396 BAM harmonized CPTAC3 9748b2c5-bdc4-436f-bffe-db0efeaf1624 975fd6fc3e59154e3d7f7538ab29942f {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor"} -C3N-00335.RNA-Seq.chimeric.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.chimeric.gdc_realn.bam 111868523 BAM chimeric harmonized CPTAC3 8e55906a-9e4d-4986-bcb5-4caedc9fdbe5 e6cd9a01203355bf7fb561868f29bf03 {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor"} -C3N-00335.RNA-Seq.genomic.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.genomic.gdc_realn.bam 7294226631 BAM genomic harmonized CPTAC3 d6fef36b-fcde-4aa3-a7e7-d5938e31806f 85e344f4d04b445ac3a66a2a049adf6d {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor"} -C3N-00335.RNA-Seq.S13_L006_R1.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R1_001.fastq.gz 3547291578 FASTQ S13_L006_R1 unaligned CPTAC3 ed41b710-e03a-402f-a5f5-7edd980641ae f4244cac9a9cbf43fca27daa02ee1fe6 {"aliquot_tag": "ALQ_8e4bfb59", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00335.RNA-Seq.S13_L006_R2.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R2_001.fastq.gz 3865592246 FASTQ S13_L006_R2 unaligned CPTAC3 71b23a8a-c3a4-4c35-bb58-f03e9e6d8da0 c55d008c1cdaedb7236f90f22acab809 {"aliquot_tag": "ALQ_8e4bfb59", "sample": "S13", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00335.RNA-Seq.transcriptome.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.transcriptome.gdc_realn.bam 11558082184 BAM transcriptome harmonized CPTAC3 01ae5046-7b14-48d9-a16d-f2009830d649 ae4f73bf9ed4b1e7e71ecb55d6936ef8 {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor"} -C3N-00335.WGS.N C3N-00335 UCEC WGS blood_normal CPT0018910002 CPT0018910002.WholeGenome.RP-1303.bam 67299008998 BAM aligned CPTAC3 77c78fe7-1def-4cad-aca6-785757929fbd a58f952ff2d7d7127c4cd50c49f650a6 {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal"} -C3N-00335.WGS.N.hg38 C3N-00335 UCEC WGS blood_normal CPT0018910002 360ce993-b06e-488c-8d6b-645b93688df0_gdc_realn.bam 98373954956 BAM harmonized CPTAC3 90e40803-c8e8-42d5-892c-31d26341bab7 f51435d80db950a9bd16cd88a1b9d8b7 {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal"} -C3N-00335.WGS.T C3N-00335 UCEC WGS tumor CPT0018790006 CPT0018790006.WholeGenome.RP-1303.bam 59355858700 BAM aligned CPTAC3 7dec1b78-546b-4618-937a-f28598215707 6eb382d15910e5f329576ee26aca637b {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor"} -C3N-00335.WGS.T.hg38 C3N-00335 UCEC WGS tumor CPT0018790006 27358361-30f1-497e-aec1-95d130c16820_gdc_realn.bam 85910435126 BAM harmonized CPTAC3 bd8cc186-dc1e-407f-9250-4615d7e84c57 555621da7bbb5cdb4b6c4adc09ea64af {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor"} -C3N-00335.WXS.N C3N-00335 UCEC WXS blood_normal CPT0018910002 CPT0018910002.WholeExome.RP-1303.bam 25991356544 BAM aligned CPTAC3 50bc0004-e7a5-480b-b488-d85d405a3c0e fe624e5e1caaf8d8c26d7fab1dbffc7b {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal"} -C3N-00335.WXS.N.hg38 C3N-00335 UCEC WXS blood_normal CPT0018910002 360ce993-b06e-488c-8d6b-645b93688df0_gdc_realn.bam 36319602491 BAM harmonized CPTAC3 30e9f0dd-467c-4332-8d66-bff36f698928 47c7f2a28d938c902903cce996b4f7bd {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal"} -C3N-00335.WXS.T C3N-00335 UCEC WXS tumor CPT0018790006 CPT0018790006.WholeExome.RP-1303.bam 25893407766 BAM aligned CPTAC3 d557066f-c9ff-4d82-b010-b89d1da90aca e9932e95011734ce21b7ba0550894b07 {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor"} -C3N-00335.WXS.T.hg38 C3N-00335 UCEC WXS tumor CPT0018790006 27358361-30f1-497e-aec1-95d130c16820_gdc_realn.bam 35503064581 BAM harmonized CPTAC3 d6c873cf-c90d-4c3b-8b69-2c51dcf49fa4 3f66cd9d4f5a52c401de8b9fdbf44838 {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor"} -C3N-00337.MethArray.Green.T C3N-00337 UCEC Methylation_Array tumor CPT0018960006 202178770045_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c83e2593-9bc2-486c-88b8-36a039ddb2ce 7dc4017799a5f180936053a4a3100d3a {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor"} -C3N-00337.MethArray.Red.T C3N-00337 UCEC Methylation_Array tumor CPT0018960006 202178770045_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 343af149-8fab-4bcc-8021-6872f53e449f ad3ed79579ab9b342cb771826dbf8862 {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor"} -C3N-00337.miRNA-Seq.S15_L003_R1.T C3N-00337 UCEC miRNA-Seq tumor CPT0018960013 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L003_R1_001.unaln.bam 203032469 BAM S15_L003_R1 unaligned CPTAC3 c2d13145-6230-4249-a9b2-2deaa36a9c1f c4780de5e914599476e62aee72ae2cd3 {"aliquot_tag": "ALQ_cfdfd5a7", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00337.miRNA-Seq.T.hg38 C3N-00337 UCEC miRNA-Seq tumor CPT0018960013 e28252c9-c297-422c-b8f1-d229d5002698_mirnaseq_gdc_realn.bam 219327453 BAM harmonized CPTAC3 553a72ec-de1a-45e6-9f15-a66f519c4956 ae1f8aaec038156418c1ebe37f5d6e6d {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor"} -C3N-00337.RNA-Seq.chimeric.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.chimeric.gdc_realn.bam 86687550 BAM chimeric harmonized CPTAC3 edf5e11c-c0be-4239-8e73-278feeb718b9 f72206d772e7e99d547b409e1309d504 {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor"} -C3N-00337.RNA-Seq.genomic.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.genomic.gdc_realn.bam 7381831019 BAM genomic harmonized CPTAC3 d642036b-8c99-43e9-b708-6fd2e36b819f a31c7b941555d9542058dbe881eb6e40 {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor"} -C3N-00337.RNA-Seq.S7_L005_R1.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R1_001.fastq.gz 3574102098 FASTQ S7_L005_R1 unaligned CPTAC3 2ed2fd9d-d69e-4924-bcac-555bfa24030e 3026ba98c89ef90ad8012d159148aede {"aliquot_tag": "ALQ_cfdfd5a7", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00337.RNA-Seq.S7_L005_R2.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R2_001.fastq.gz 3742480576 FASTQ S7_L005_R2 unaligned CPTAC3 6d9108cf-e7d8-4040-8e1d-3f707ee381c8 6e98311f6d227ca5a52357b0e3c19999 {"aliquot_tag": "ALQ_cfdfd5a7", "sample": "S7", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00337.RNA-Seq.transcriptome.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.transcriptome.gdc_realn.bam 8391817521 BAM transcriptome harmonized CPTAC3 84946eb2-18d9-49ad-b972-edcad384906e 30bb498278383db856cae49013378cb9 {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor"} -C3N-00337.WGS.N C3N-00337 UCEC WGS blood_normal CPT0019100002 CPT0019100002.WholeGenome.RP-1303.bam 70728738325 BAM aligned CPTAC3 f5ba38e4-9ecb-4737-9eee-6d71c65ef4cf 1cf6c0884fe5643918023e61abed3b64 {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal"} -C3N-00337.WGS.N.hg38 C3N-00337 UCEC WGS blood_normal CPT0019100002 cec2f45d-c155-483f-97df-221ca574f6b9_gdc_realn.bam 105361244155 BAM harmonized CPTAC3 0686705a-97fa-4c41-b9fa-15664a310849 b6238198f5cfb0cf75eaeefb8faca143 {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal"} -C3N-00337.WGS.T C3N-00337 UCEC WGS tumor CPT0018960006 CPT0018960006.WholeGenome.RP-1303.bam 65343177951 BAM aligned CPTAC3 71dac1ca-9553-49b3-942a-0bee18cf34d4 c53157c9f1e56ab0b852dc90e6a8b51f {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor"} -C3N-00337.WGS.T.hg38 C3N-00337 UCEC WGS tumor CPT0018960006 9a2dfd9e-6dd6-47a2-8e80-d48625d4e780_gdc_realn.bam 94823040903 BAM harmonized CPTAC3 a09c225a-3e70-41ff-9a0e-0900c7be4f69 fd8542ebc006c9516035b75f16127e8d {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor"} -C3N-00337.WXS.N C3N-00337 UCEC WXS blood_normal CPT0019100002 CPT0019100002.WholeExome.RP-1303.bam 34306966546 BAM aligned CPTAC3 94c8c234-c469-4230-a494-dd6129561aa4 1d9c7e5c21815d349cafa330d3805437 {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal"} -C3N-00337.WXS.N.hg38 C3N-00337 UCEC WXS blood_normal CPT0019100002 cec2f45d-c155-483f-97df-221ca574f6b9_gdc_realn.bam 48416609578 BAM harmonized CPTAC3 7183ee6a-cb23-44bc-becd-c98704733392 9e1c8d8d0091ad22fcfb4719980b4eed {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal"} -C3N-00337.WXS.T C3N-00337 UCEC WXS tumor CPT0018960006 CPT0018960006.WholeExome.RP-1303.bam 31372168477 BAM aligned CPTAC3 98c496b5-ba13-40d1-88ca-c83251d259ea 6b750484f66c25624d74b35599ada661 {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor"} -C3N-00337.WXS.T.hg38 C3N-00337 UCEC WXS tumor CPT0018960006 9a2dfd9e-6dd6-47a2-8e80-d48625d4e780_gdc_realn.bam 43163280079 BAM harmonized CPTAC3 a8043bba-addf-4b7b-9349-ad547fc81f15 0bd585223efcb2fe0e25fd3a24e2057e {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor"} -C3N-00339.MethArray.Green.T C3N-00339 UCEC Methylation_Array tumor CPT0020530009 202184990063_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d09e637f-6d3e-4181-ad4a-b7bf43384be1 0523c059ee9c4330ee6f2c02986f332b {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor"} -C3N-00339.MethArray.Red.T C3N-00339 UCEC Methylation_Array tumor CPT0020530009 202184990063_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 5ef8b425-dba9-4397-9fc3-2128796f0cec 75ca86c253262cd172ba9d6de80c4b61 {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor"} -C3N-00339.miRNA-Seq.S41_L004_R1.T C3N-00339 UCEC miRNA-Seq tumor CPT0020530006 181113_UNC31-K00269_0164_AH23NNBBXY_GTAGAG_S41_L004_R1_001.unaln.bam 164878094 BAM S41_L004_R1 unaligned CPTAC3 40eb40fa-3990-4e01-8769-8d59ec5edc00 a02ef6518139ac89347da1110c305cfd {"aliquot_tag": "ALQ_a4ec16e6", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00339.miRNA-Seq.T.hg38 C3N-00339 UCEC miRNA-Seq tumor CPT0020530006 919ba823-cf11-4ef1-9848-21cfb3cb19d2_mirnaseq_gdc_realn.bam 176606533 BAM harmonized CPTAC3 23215099-1d30-4423-90f7-dd4364387bc2 a054fd6ae3a403088c45299d28f66836 {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor"} -C3N-00339.RNA-Seq.chimeric.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.chimeric.gdc_realn.bam 75246930 BAM chimeric harmonized CPTAC3 ec1c9468-dd54-4100-8549-18d853cfee60 0ec453a257ee051631d42c243d7c7a1d {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor"} -C3N-00339.RNA-Seq.genomic.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.genomic.gdc_realn.bam 6545746008 BAM genomic harmonized CPTAC3 2655eeb5-10b2-45e4-8256-42aa598faa93 2d930cdf9eb3a2951925affd1fa3a4b8 {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor"} -C3N-00339.RNA-Seq.S9_L003_R1.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R1_001.fastq.gz 3440816927 FASTQ S9_L003_R1 unaligned CPTAC3 b583347d-5091-47aa-88f4-f13b6ccdbc9b 15b61845fa7ae85615b1703b468fa885 {"aliquot_tag": "ALQ_a4ec16e6", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00339.RNA-Seq.S9_L003_R2.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R2_001.fastq.gz 3737270066 FASTQ S9_L003_R2 unaligned CPTAC3 fb5ba732-fdb9-4fb1-a189-ca27dc978cfd 209bb41d729de6f50ecafb1be32c1add {"aliquot_tag": "ALQ_a4ec16e6", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00339.RNA-Seq.transcriptome.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.transcriptome.gdc_realn.bam 9469088797 BAM transcriptome harmonized CPTAC3 16e2bb37-9c78-4a82-909f-c4d2343444be e2fd9f199328d2303e3d8d00f363fdfa {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor"} -C3N-00339.WGS.N C3N-00339 UCEC WGS blood_normal CPT0020600002 CPT0020600002.WholeGenome.RP-1303.bam 55829048756 BAM aligned CPTAC3 3948c348-84d7-4a2d-a1bb-5f8f71290d3d e8c00f48961f04a01e6350ca21cc2135 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00339.WGS.N.hg38 C3N-00339 UCEC WGS blood_normal CPT0020600002 f9f0e294-4ac5-4fca-b75c-bdaa29f51037_gdc_realn.bam 79699800791 BAM harmonized CPTAC3 508fe33e-3cf2-4659-be9f-669d5d54e09d 834536031d90ac38dc61233d378c5c20 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00339.WGS.T C3N-00339 UCEC WGS tumor CPT0020530009 CPT0020530009.WholeGenome.RP-1303.bam 69208927735 BAM aligned CPTAC3 dc3719ac-c814-4d48-ad58-8e22dfc5361c e1abe594d04137d2f509a8cac9c0266a {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor"} -C3N-00339.WGS.T.hg38 C3N-00339 UCEC WGS tumor CPT0020530009 8f03933b-8c46-46b6-9b33-ca5d62d9f61d_gdc_realn.bam 97992009121 BAM harmonized CPTAC3 163c572a-c9a2-4fd6-a4e4-2471c34b02d1 0eccdeea1e52276a0445fa2792132295 {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor"} -C3N-00339.WXS.N C3N-00339 UCEC WXS blood_normal CPT0020600002 CPT0020600002.WholeExome.RP-1303.bam 23686937948 BAM aligned CPTAC3 4073402b-0ed8-45ed-a6fa-e53758b6a568 edc74d0c44acb63c4fee7f86adba4f74 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00339.WXS.N.hg38 C3N-00339 UCEC WXS blood_normal CPT0020600002 f9f0e294-4ac5-4fca-b75c-bdaa29f51037_gdc_realn.bam 32737528434 BAM harmonized CPTAC3 3f967a5c-a804-4979-9bff-ccf26929a35c ed5759deec3e6c17aa23c9dc7da4c099 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00339.WXS.T C3N-00339 UCEC WXS tumor CPT0020530009 CPT0020530009.WholeExome.RP-1303.bam 29841892036 BAM aligned CPTAC3 8d561558-33a7-43ce-82ee-16393ac3aa86 e0bd38829b4a7801442e4eeb42fcb0ad {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor"} -C3N-00339.WXS.T.hg38 C3N-00339 UCEC WXS tumor CPT0020530009 8f03933b-8c46-46b6-9b33-ca5d62d9f61d_gdc_realn.bam 40070022155 BAM harmonized CPTAC3 0c0a86f8-c867-41de-a46c-14d6df8e69bf 8ed92663d94662a95d35290dec01a447 {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor"} -C3N-00340.MethArray.Green.T C3N-00340 UCEC Methylation_Array tumor CPT0022620006 202163550115_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0dde79af-7751-4895-851e-3b4cdba635b2 3b8cc7714b44bdec0abdd3ea2bdd272f {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor"} -C3N-00340.MethArray.Red.T C3N-00340 UCEC Methylation_Array tumor CPT0022620006 202163550115_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 5d7a985a-8673-4205-acf8-95ab66250c9c a7020e91c603b68c310c63a9766ebb27 {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor"} -C3N-00340.miRNA-Seq.S46_L004_R1.T C3N-00340 UCEC miRNA-Seq tumor CPT0022620009 181113_UNC31-K00269_0164_AH23NNBBXY_CGTACG_S46_L004_R1_001.unaln.bam 318161326 BAM S46_L004_R1 unaligned CPTAC3 5504e0ee-b629-4d6e-a1ba-acc4ccab9b74 f1cab898be11d87f16122a8619468092 {"aliquot_tag": "ALQ_18384140", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00340.miRNA-Seq.T.hg38 C3N-00340 UCEC miRNA-Seq tumor CPT0022620009 d5949ff1-adfa-4197-808a-c3178d4c5ccf_mirnaseq_gdc_realn.bam 339831034 BAM harmonized CPTAC3 d7c1732f-2edc-4aac-847f-d180d97b06af fdba94c72ddc363bc212bfa894096d2d {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor"} -C3N-00340.RNA-Seq.chimeric.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.chimeric.gdc_realn.bam 80805009 BAM chimeric harmonized CPTAC3 28561b99-5d17-444b-bd77-f32d8b4fe0e3 ce1ca1b552a9eeaa7977daa763805108 {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor"} -C3N-00340.RNA-Seq.genomic.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.genomic.gdc_realn.bam 11459517217 BAM genomic harmonized CPTAC3 4d1c3492-cdbb-4646-a87e-efc6bd9ad55d 9e73a8b0ceec324798af16e8491b44e0 {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor"} -C3N-00340.RNA-Seq.S23_L006_R1.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R1_001.fastq.gz 5338738796 FASTQ S23_L006_R1 unaligned CPTAC3 9c6560e4-984b-4de4-b784-06e2d358ee2d 9dd9163ff6d694a7f74a8cfaed94a456 {"aliquot_tag": "ALQ_18384140", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00340.RNA-Seq.S23_L006_R2.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R2_001.fastq.gz 5783172010 FASTQ S23_L006_R2 unaligned CPTAC3 b3de2a7e-ac96-42dd-bcf2-61f14df637c6 45bbed79dbd98b89b72f86cb3d1246b6 {"aliquot_tag": "ALQ_18384140", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00340.RNA-Seq.transcriptome.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.transcriptome.gdc_realn.bam 15484728078 BAM transcriptome harmonized CPTAC3 7b256dbf-514a-4388-8744-bcaef5223d95 89406356056561b9d7e898b38bbdcbd9 {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor"} -C3N-00340.WGS.N C3N-00340 UCEC WGS blood_normal CPT0020710002 CPT0020710002.WholeGenome.RP-1303.bam 67600994210 BAM aligned CPTAC3 7a30f8e4-db7d-46e7-9775-e0cfa59c6e1d 1a3da6b5c7224699c95b49386828bc4b {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal"} -C3N-00340.WGS.N.hg38 C3N-00340 UCEC WGS blood_normal CPT0020710002 473ea35b-e97c-4d26-9321-84efd530f725_gdc_realn.bam 97139036145 BAM harmonized CPTAC3 32560c79-2b82-4441-b1f2-fbd2838043ae ed36d5f0c20f6b9e6dbfaf002ad3b55a {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal"} -C3N-00340.WGS.T C3N-00340 UCEC WGS tumor CPT0022620006 CPT0022620006.WholeGenome.RP-1303.bam 67100265324 BAM aligned CPTAC3 b8945bd3-fed5-44d7-a315-93f127ec6686 08fa318b6face7fa7f32e374d5eb889e {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor"} -C3N-00340.WGS.T.hg38 C3N-00340 UCEC WGS tumor CPT0022620006 bdc0043c-0eb0-4495-9620-7ede4bac168c_gdc_realn.bam 96198687097 BAM harmonized CPTAC3 bdd16566-8a24-4e7b-9c62-d5d9b84196eb 9d9e397189aeee515f2f3351bd549ecd {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor"} -C3N-00340.WXS.N C3N-00340 UCEC WXS blood_normal CPT0020710002 CPT0020710002.WholeExome.RP-1303.bam 28761775786 BAM aligned CPTAC3 dd13ec1a-c913-4f22-803c-055eb8e583f6 9a3793a757cc7313b3c469229bc07f33 {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal"} -C3N-00340.WXS.N.hg38 C3N-00340 UCEC WXS blood_normal CPT0020710002 473ea35b-e97c-4d26-9321-84efd530f725_gdc_realn.bam 39186264136 BAM harmonized CPTAC3 4f7981ac-194f-4927-ae66-97a7476372de 1ef082b34c7f7fd1b1c1c6a05c10f7f4 {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal"} -C3N-00340.WXS.T C3N-00340 UCEC WXS tumor CPT0022620006 CPT0022620006.WholeExome.RP-1303.bam 23378429144 BAM aligned CPTAC3 4a86747f-73ce-4f96-99c0-5dbf356dc061 c90b1d8ecbcd3018fe495f5892b91f46 {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor"} -C3N-00340.WXS.T.hg38 C3N-00340 UCEC WXS tumor CPT0022620006 bdc0043c-0eb0-4495-9620-7ede4bac168c_gdc_realn.bam 31790294330 BAM harmonized CPTAC3 8c0129ea-4649-403e-9a53-2853c81782f0 626f0ecc6eb43935d182c32939787d16 {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor"} -C3N-00377.ADD_b4f9a5c.miRNA-Seq.S33_L004_R1.T C3N-00377 UCEC miRNA-Seq tumor CPT0021650006 181012_UNC32-K00270_0124_AH223CBBXY_CTTGTA_S33_L004_R1_001.unaln.bam 230161002 BAM S33_L004_R1 unaligned CPTAC3 e1187496-38da-40c6-9198-de1d986b913c aa8c449632276952ba7d9b52684f64c0 {"aliquot_tag": "ADD_b4f9a5c", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00377.ADD_b4f9a5c.miRNA-Seq.T.hg38 C3N-00377 UCEC miRNA-Seq tumor CPT0021650006 4c94aef0-feb3-4b36-b713-4a95a0304f86_mirnaseq_gdc_realn.bam 258615587 BAM harmonized CPTAC3 256d0167-27f8-43e8-b020-0262c620d57f 0785ff56bb75f3babbd4d862a957852e {"aliquot_tag": "ADD_b4f9a5c", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor"} -C3N-00377.MethArray.Green.T C3N-00377 UCEC Methylation_Array tumor CPT0021650009 202178770111_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1d9c8cbc-c76b-4122-998b-87193e4b0bf7 f3e06ecff3c4d3ad843faf88ece826e3 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor"} -C3N-00377.MethArray.Red.T C3N-00377 UCEC Methylation_Array tumor CPT0021650009 202178770111_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e875e261-9713-466a-b7bb-e6f460fa8270 25e6b3e80f7b800c6aa34f61e4aab60f {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor"} -C3N-00377.RNA-Seq.chimeric.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.chimeric.gdc_realn.bam 56432488 BAM chimeric harmonized CPTAC3 f14c7adc-de4c-4829-8a0b-16888fbd5c3f a36b4ef82dcd75e46316a2702d21c30c {"aliquot_tag": "ALQ_623e5f92", "gdc_sample_type": "Primary Tumor"} -C3N-00377.RNA-Seq.genomic.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.genomic.gdc_realn.bam 8565063148 BAM genomic harmonized CPTAC3 1a302d4d-f2e2-4484-96bc-6d21b63a6525 2eb4cad5d77b14f273fc26945b014394 {"aliquot_tag": "ALQ_623e5f92", "gdc_sample_type": "Primary Tumor"} -C3N-00377.RNA-Seq.S8_L003_R1.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R1_001.fastq.gz 4517871402 FASTQ S8_L003_R1 unaligned CPTAC3 927fd63f-62e5-491b-8c64-bdb58cb0881c 874266381c0435be1d3049f93eb1aa43 {"aliquot_tag": "ALQ_623e5f92", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00377.RNA-Seq.S8_L003_R2.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R2_001.fastq.gz 4774004137 FASTQ S8_L003_R2 unaligned CPTAC3 bc45d610-dace-4837-a41d-4a4ea3cb8b5c ffc86c6e38bac110b4e1cf1d5787f3e7 {"aliquot_tag": "ALQ_623e5f92", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00377.RNA-Seq.transcriptome.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.transcriptome.gdc_realn.bam 11038047736 BAM transcriptome harmonized CPTAC3 28c187aa-a0cc-423b-93ba-13de08e9ff99 eb0dc54da955bd1bd36c869c09abd2fa {"aliquot_tag": "ALQ_623e5f92", "gdc_sample_type": "Primary Tumor"} -C3N-00377.WGS.N C3N-00377 UCEC WGS blood_normal CPT0021710002 CPT0021710002.WholeGenome.RP-1303.bam 63545834158 BAM aligned CPTAC3 eaf75e80-765f-4842-a58f-c59ba336a786 c5054d3b98f7af11470af9056c6d98e5 {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal"} -C3N-00377.WGS.N.hg38 C3N-00377 UCEC WGS blood_normal CPT0021710002 e41f9914-e7d0-41c2-bf1c-7cc9ef6c2a8c_gdc_realn.bam 92298249123 BAM harmonized CPTAC3 d41328fd-e13e-41ad-affa-a32acce44ecc 243bbdd70a4c6ba44a17fcf10a1f049e {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal"} -C3N-00377.WGS.T C3N-00377 UCEC WGS tumor CPT0021650009 CPT0021650009.WholeGenome.RP-1303.bam 55161803689 BAM aligned CPTAC3 ba90e789-0c80-481e-8109-bad3e61376f9 8254d3ef797f205f8b6fc93a8fede0d3 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor"} -C3N-00377.WGS.T.hg38 C3N-00377 UCEC WGS tumor CPT0021650009 8886551e-e603-46cd-8f0e-f787821cbb00_gdc_realn.bam 80825463693 BAM harmonized CPTAC3 33b3fd40-ac00-4ae7-9643-e32d8fe38859 107e15c420b0fedd7d7f59b7376c20a6 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor"} -C3N-00377.WXS.N C3N-00377 UCEC WXS blood_normal CPT0021710002 CPT0021710002.WholeExome.RP-1303.bam 28725354425 BAM aligned CPTAC3 bd05fb6c-0e21-451f-a377-bb10488c537e c53d4d9761e6ac422953bc7c169c6901 {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal"} -C3N-00377.WXS.N.hg38 C3N-00377 UCEC WXS blood_normal CPT0021710002 e41f9914-e7d0-41c2-bf1c-7cc9ef6c2a8c_gdc_realn.bam 39052613058 BAM harmonized CPTAC3 1cecc8fa-07b8-4945-8bb9-2cd88ef2561f 157931051a486ff680f4ed216d6be33c {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal"} -C3N-00377.WXS.T C3N-00377 UCEC WXS tumor CPT0021650009 CPT0021650009.WholeExome.RP-1303.bam 25125237646 BAM aligned CPTAC3 eecca0a0-8639-4107-b6f1-1f49b32a5b0e 73c56c7435d3902d009ac9f8c4a66519 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor"} -C3N-00377.WXS.T.hg38 C3N-00377 UCEC WXS tumor CPT0021650009 8886551e-e603-46cd-8f0e-f787821cbb00_gdc_realn.bam 34209112955 BAM harmonized CPTAC3 3de00368-7da2-4f00-8396-3eb51f1b4b97 54dad050dd676d937023013db4d918c0 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor"} -C3N-00379.MethArray.Green.T C3N-00379 UCEC Methylation_Array tumor CPT0015520009 202184990069_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 37b2bd3d-2a0e-4d7a-ab42-9c1f739cae24 d250e0068efe5644e83cdecbe57d3609 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor"} -C3N-00379.MethArray.Red.T C3N-00379 UCEC Methylation_Array tumor CPT0015520009 202184990069_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 cb0fbac3-3d16-4229-b413-d932d312076e 902b6f1b5935b1dcc402dc133f249d20 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor"} -C3N-00379.miRNA-Seq.S7_L003_R1.T C3N-00379 UCEC miRNA-Seq tumor CPT0015520006 181113_UNC31-K00269_0164_AH23NNBBXY_CACGAT_S7_L003_R1_001.unaln.bam 412032907 BAM S7_L003_R1 unaligned CPTAC3 2352620b-d346-4aa1-8b6b-e717a3129954 64c6ba53e1921bc18c400f29f1deb850 {"aliquot_tag": "ALQ_453b1712", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00379.miRNA-Seq.T.hg38 C3N-00379 UCEC miRNA-Seq tumor CPT0015520006 a24e6932-70f3-4434-9142-083368ec340e_mirnaseq_gdc_realn.bam 466022560 BAM harmonized CPTAC3 ffda6dd1-34d5-4d15-9ce0-1990ad176d73 525d764652c693da1af01314672507bd {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor"} -C3N-00379.RNA-Seq.chimeric.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.chimeric.gdc_realn.bam 109442189 BAM chimeric harmonized CPTAC3 939c373c-f31b-4a0d-babc-0a6be3f8bdd4 1c0beae9afe57d5c1a4943961ad2690e {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor"} -C3N-00379.RNA-Seq.genomic.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.genomic.gdc_realn.bam 13723166783 BAM genomic harmonized CPTAC3 45cf5891-1921-4ce5-8db6-a641996c45dd 4342f0a611f26f77d16cc3b9cf7f16ee {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor"} -C3N-00379.RNA-Seq.S1_L001_R1.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R1_001.fastq.gz 6517268788 FASTQ S1_L001_R1 unaligned CPTAC3 8b3b442d-0e88-4e6c-84b0-b4eaae2be844 bbaec1bf38bdfa7b42683a2a9d75ab0e {"aliquot_tag": "ALQ_453b1712", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00379.RNA-Seq.S1_L001_R2.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R2_001.fastq.gz 6971123033 FASTQ S1_L001_R2 unaligned CPTAC3 9c1db68b-16f9-42cd-b818-cd95a5236e11 b5c6ec19a42dc60bb38d788b0489c076 {"aliquot_tag": "ALQ_453b1712", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00379.RNA-Seq.transcriptome.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.transcriptome.gdc_realn.bam 16290383665 BAM transcriptome harmonized CPTAC3 845d5748-c197-45bd-a695-10acadde37df b84c8bde82a74ccee2121a6d6f54e911 {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor"} -C3N-00379.WGS.N C3N-00379 UCEC WGS blood_normal CPT0015740002 CPT0015740002.WholeGenome.RP-1303.bam 55192139656 BAM aligned CPTAC3 896e3ea7-e706-4e28-8829-76b6b014c6eb ed29aba9243990ca9a0d9f6fe42d67be {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00379.WGS.N.hg38 C3N-00379 UCEC WGS blood_normal CPT0015740002 0041944a-53b2-47b2-8a4e-d50b00467f10_gdc_realn.bam 80629464047 BAM harmonized CPTAC3 546f1c4f-8040-4463-8bdf-e6b7db95345b a3ca45029de725b2936013c2d45f2ee7 {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00379.WGS.T C3N-00379 UCEC WGS tumor CPT0015520009 CPT0015520009.WholeGenome.RP-1303.bam 69093567058 BAM aligned CPTAC3 94ebd915-92b5-4f21-a13f-1f78af85f3b3 dd895256f2e877b387eb8ac47e710353 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor"} -C3N-00379.WGS.T.hg38 C3N-00379 UCEC WGS tumor CPT0015520009 fcb00b68-150a-4231-9f7b-32cb967f8c23_gdc_realn.bam 101639959383 BAM harmonized CPTAC3 3d01fbb1-f7ce-45be-960f-d4d4fcd68d73 492686151ca1bd6611dc3637f47d20f1 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor"} -C3N-00379.WXS.N C3N-00379 UCEC WXS blood_normal CPT0015740002 CPT0015740002.WholeExome.RP-1303.bam 30583089846 BAM aligned CPTAC3 30ee48c9-4925-4d05-a7b4-23f0e18813f8 a0c1142f7876ebd5e27503a83f314f42 {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00379.WXS.N.hg38 C3N-00379 UCEC WXS blood_normal CPT0015740002 0041944a-53b2-47b2-8a4e-d50b00467f10_gdc_realn.bam 41704433896 BAM harmonized CPTAC3 7828f203-3720-43d3-be43-c834edb7b683 df008cacc55ae3581b61b7dc4446407d {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal"} -C3N-00379.WXS.T C3N-00379 UCEC WXS tumor CPT0015520009 CPT0015520009.WholeExome.RP-1303.bam 23012422494 BAM aligned CPTAC3 46cbd86d-ddfa-45c8-b52c-22f641f1e678 27b7ed2be6a46c209f3a42e88ac1196e {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor"} -C3N-00379.WXS.T.hg38 C3N-00379 UCEC WXS tumor CPT0015520009 fcb00b68-150a-4231-9f7b-32cb967f8c23_gdc_realn.bam 31547305183 BAM harmonized CPTAC3 4b47bcc5-e26c-4f9b-944e-d0e1f06ed67c 4908edda85767d2e18a4ea2cc815bae3 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor"} -C3N-00380.MethArray.Green.T C3N-00380 CCRCC Methylation_Array tumor CPT0021240009 202184900104_R02C01_Grn.idat 13676256 IDAT Green NA CPTAC3 7b196148-4cfa-4a60-9696-d229f3377fd6 59b841ddd8e8502a64fcc0e6e19208d0 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor"} -C3N-00380.MethArray.Red.T C3N-00380 CCRCC Methylation_Array tumor CPT0021240009 202184900104_R02C01_Red.idat 13676256 IDAT Red NA CPTAC3 c7aa0a9f-3f4b-4f88-8abc-9e28fc716d3a c4cf2d353edb1682b4f1ec6ea7c7273a {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor"} -C3N-00380.miRNA-Seq.S34_L004_R1.T C3N-00380 CCRCC miRNA-Seq tumor CPT0021240006 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L004_R1_001.unaln.bam 245685015 BAM S34_L004_R1 unaligned CPTAC3 2b771e29-97f8-41a4-9bb6-64293c84d832 87368efd6b3301485f3b1f711e1a1195 {"aliquot_tag": "ALQ_adbef1fa", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00380.miRNA-Seq.T.hg38 C3N-00380 CCRCC miRNA-Seq tumor CPT0021240006 1f28faad-eb1a-453c-908c-b1016641056e_mirnaseq_gdc_realn.bam 268196640 BAM harmonized CPTAC3 b2d7f643-80f9-4688-bf2a-076fae00c395 298f036df1c1c82a0aedb0841cc8e594 {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor"} -C3N-00380.RNA-Seq.chimeric.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.chimeric.gdc_realn.bam 231090008 BAM chimeric harmonized CPTAC3 843d37bd-4e72-4bd8-a08b-976f9fc00ea2 a368b0d7ab0087f83e322f89cd273551 {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor"} -C3N-00380.RNA-Seq.genomic.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.genomic.gdc_realn.bam 7804966886 BAM genomic harmonized CPTAC3 4afe0b0f-6055-4bff-938d-b45502741d4b cb44469ebb0053788f57b283df7b08d9 {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor"} -C3N-00380.RNA-Seq.S10_L003_R1.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4253947421 FASTQ S10_L003_R1 unaligned CPTAC3 bb233eea-a1a8-4de1-8b0f-8be9aca0debf 026ba4b0db034ee9e8b7463b93aed48d {"aliquot_tag": "ALQ_adbef1fa", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00380.RNA-Seq.S10_L003_R2.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 4626882444 FASTQ S10_L003_R2 unaligned CPTAC3 6eaa6689-369f-438c-988a-719096d578cb 42f4a7c2d73ef458394551562239f0d0 {"aliquot_tag": "ALQ_adbef1fa", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00380.RNA-Seq.transcriptome.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.transcriptome.gdc_realn.bam 10845437572 BAM transcriptome harmonized CPTAC3 046ad9e9-9eb1-4b07-9e0a-85a9e90c9825 f07e787da357abe75196ecba8d6756ce {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor"} -C3N-00380.WGS.N C3N-00380 CCRCC WGS blood_normal CPT0021300002 CPT0021300002.WholeGenome.RP-1303.bam 62774576116 BAM aligned CPTAC3 9a341d9e-938c-4226-8064-060b81e95bd2 55c52b71c378391252ba3b9347a5216d {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal"} -C3N-00380.WGS.N.hg38 C3N-00380 CCRCC WGS blood_normal CPT0021300002 f6488f85-101a-4703-af6d-d7a024f8294f_gdc_realn.bam 92154085922 BAM harmonized CPTAC3 f87df189-3e47-4980-8511-1ad15b202e5d 79f24a3c132d0eb7f312fe9b77a35893 {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal"} -C3N-00380.WGS.T C3N-00380 CCRCC WGS tumor CPT0021240009 CPT0021240009.WholeGenome.RP-1303.bam 58153179192 BAM aligned CPTAC3 e49258a0-810a-43b6-bbbf-828a5e09e653 9b79949137c58fdfd3a49628eca30ae7 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor"} -C3N-00380.WGS.T.hg38 C3N-00380 CCRCC WGS tumor CPT0021240009 80e3b7fb-78b0-4ea8-9792-264a50cab826_gdc_realn.bam 85768591244 BAM harmonized CPTAC3 dbdebb34-5c24-4ce0-8ae4-5af6a08a66e1 a35c74b529cf7a82527ca2ce2655fdc1 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor"} -C3N-00380.WXS.N C3N-00380 CCRCC WXS blood_normal CPT0021300002 CPT0021300002.WholeExome.RP-1303.bam 21368218150 BAM aligned CPTAC3 5d756390-c9f6-49fd-b090-0ab5d54713f9 161df01f06f0f8b5f22df7b5e8ae9d55 {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal"} -C3N-00380.WXS.N.hg38 C3N-00380 CCRCC WXS blood_normal CPT0021300002 f6488f85-101a-4703-af6d-d7a024f8294f_gdc_realn.bam 29225050475 BAM harmonized CPTAC3 d608689d-02ca-414d-968d-ae8a9256ebe0 04e8e25e3819663ddad032769f2c67b8 {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal"} -C3N-00380.WXS.T C3N-00380 CCRCC WXS tumor CPT0021240009 CPT0021240009.WholeExome.RP-1303.bam 28875237553 BAM aligned CPTAC3 d713a110-92e9-46e6-8bf1-990ce88179cc 41945b64cd428b36c5116209d5e36497 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor"} -C3N-00380.WXS.T.hg38 C3N-00380 CCRCC WXS tumor CPT0021240009 80e3b7fb-78b0-4ea8-9792-264a50cab826_gdc_realn.bam 39445228936 BAM harmonized CPTAC3 a8238352-f2db-4c2d-889e-998368b4d1ff 99c9989181e2d4210824e04340f40a89 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor"} -C3N-00383.MethArray.Green.T C3N-00383 UCEC Methylation_Array tumor CPT0022830006 202184990066_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 549d094d-f346-40a4-b512-16879f811ee1 9322be065450d2f979e5e67fce4b8a7f {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor"} -C3N-00383.MethArray.Red.T C3N-00383 UCEC Methylation_Array tumor CPT0022830006 202184990066_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 cbc1d316-8085-41f3-861e-bf62df5b38c6 23d5b289e1d1e8a5873c0d43139a4528 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor"} -C3N-00383.miRNA-Seq.A.hg38 C3N-00383 UCEC miRNA-Seq tissue_normal CPT0022850006 5177c3c4-0491-4e0d-b161-5183ca78ed93_mirnaseq_gdc_realn.bam 358909554 BAM harmonized CPTAC3 63716c1c-1c3d-4751-9380-9964d6d65a5d 0651103546729e306cb5cc41401f943b {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.miRNA-Seq.S13_L006_R1.A C3N-00383 UCEC miRNA-Seq tissue_normal CPT0022850006 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L006_R1_001.unaln.bam 314111891 BAM S13_L006_R1 unaligned CPTAC3 48ace26e-347d-4b8a-bd4c-03d6ade40448 83f31070ae06325e33e889028d64ec08 {"aliquot_tag": "ALQ_ade1b1", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.miRNA-Seq.S1_L001_R1.T C3N-00383 UCEC miRNA-Seq tumor CPT0022830009 180924_UNC31-K00269_0154_AHWTMLBBXX_ATCACG_S1_L001_R1_001.unaln.bam 191489527 BAM S1_L001_R1 unaligned CPTAC3 9eb925ca-66d6-4a1d-af69-b1a120ae51b0 253511336d569208eecba3cc5b376e1b {"aliquot_tag": "ALQ_1f520980", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00383.miRNA-Seq.T.hg38 C3N-00383 UCEC miRNA-Seq tumor CPT0022830009 42d22828-b066-4298-8ba9-2a154bc84418_mirnaseq_gdc_realn.bam 206703975 BAM harmonized CPTAC3 c6f597f5-ebdd-48d4-8dd4-f782a54b796e c08dc91289acf998b314f9d4ae13acac {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor"} -C3N-00383.RNA-Seq.chimeric.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.chimeric.gdc_realn.bam 111866115 BAM chimeric harmonized CPTAC3 b411216b-a014-4873-8cff-a0d83133ac83 53d2e769f310113dea18b3925631f760 {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.RNA-Seq.chimeric.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.chimeric.gdc_realn.bam 57641972 BAM chimeric harmonized CPTAC3 2a978c3f-c63c-4b50-9cb3-b68c7585da43 590c55218e499f150521f51593712631 {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor"} -C3N-00383.RNA-Seq.genomic.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.genomic.gdc_realn.bam 8217380016 BAM genomic harmonized CPTAC3 90d94d78-1aad-4978-b664-ef1cfe307b9f c59d07e0a170045065da60ac7f4cf017 {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.RNA-Seq.genomic.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.genomic.gdc_realn.bam 6815548328 BAM genomic harmonized CPTAC3 5a1519d6-7d29-4c03-9219-c07c676437d4 d6713acd8712e022af385ecbd0eca83a {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor"} -C3N-00383.RNA-Seq.S42_L008_R1.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R1_001.fastq.gz 3716076424 FASTQ S42_L008_R1 unaligned CPTAC3 d8fdcaab-a8eb-452b-85d3-4e8342a5aa06 f04592afe1a5d37cba0a4a5ee3b5c91f {"aliquot_tag": "ALQ_ade1b1", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.RNA-Seq.S42_L008_R2.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R2_001.fastq.gz 4055967722 FASTQ S42_L008_R2 unaligned CPTAC3 edbf898c-dc38-48e4-b61b-09f11115d61e b389436034bbb927751c127883759987 {"aliquot_tag": "ALQ_ade1b1", "sample": "S42", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.RNA-Seq.S8_L002_R1.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R1_001.fastq.gz 3168013952 FASTQ S8_L002_R1 unaligned CPTAC3 d8669320-5d71-4398-b65c-26c820c08fbf 640ce4b62d8a96c140dd9233707d8f93 {"aliquot_tag": "ALQ_1f520980", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00383.RNA-Seq.S8_L002_R2.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R2_001.fastq.gz 3425858263 FASTQ S8_L002_R2 unaligned CPTAC3 d98e6375-44c4-45d8-a771-293f086bc52b bd6ad7d75892312f2db62078c1826995 {"aliquot_tag": "ALQ_1f520980", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00383.RNA-Seq.transcriptome.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.transcriptome.gdc_realn.bam 9017619176 BAM transcriptome harmonized CPTAC3 e3e06a72-21ea-421b-8e49-37d63c32e2be cc466bae2ed9869a4028b4b431db6a0a {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.RNA-Seq.transcriptome.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.transcriptome.gdc_realn.bam 7223624337 BAM transcriptome harmonized CPTAC3 646ad651-187d-402e-aa19-3f4d2e13b58f fd74211fa8347ad597dce0193aa7b27a {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor"} -C3N-00383.WGS.A C3N-00383 UCEC WGS tissue_normal CPT0022850009 CPT0022850009.WholeGenome.RP-1303.bam 59719519301 BAM aligned CPTAC3 e3c6974b-17c8-4a48-b938-b3a5e1eaab44 7727bf11e37e5fef758177e40898d7c0 {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.WGS.A.hg38 C3N-00383 UCEC WGS tissue_normal CPT0022850009 c31e7143-6f53-495b-9ec8-40b1e8200e73_wgs_gdc_realn.bam 87306161117 BAM harmonized CPTAC3 7c58161b-0a29-40c0-92e5-8030115a429c 2a725375e333f5af59417264d6b58e07 {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.WGS.N C3N-00383 UCEC WGS blood_normal CPT0020790002 CPT0020790002.WholeGenome.RP-1303.bam 59526633670 BAM aligned CPTAC3 34fcdd0a-9742-44ea-8b25-e78c1113a640 e12bedf45518f113caf873c07c720224 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal"} -C3N-00383.WGS.N.hg38 C3N-00383 UCEC WGS blood_normal CPT0020790002 37e6dbaf-8495-467a-97d2-931a4061ec47_gdc_realn.bam 84679981239 BAM harmonized CPTAC3 ce679c8e-fc60-4adb-87c1-f1d569949992 b13c4d6d3e5bbb40cd64da0029aadc56 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal"} -C3N-00383.WGS.T C3N-00383 UCEC WGS tumor CPT0022830006 CPT0022830006.WholeGenome.RP-1303.bam 65736746224 BAM aligned CPTAC3 a2856f40-d5d0-4c51-b5a0-f4b849a4e4a7 4a37c64f293a8db27b5eea66f27609f6 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor"} -C3N-00383.WGS.T.hg38 C3N-00383 UCEC WGS tumor CPT0022830006 6e9f2a37-b53b-4017-ae76-ac141191ea9c_gdc_realn.bam 96599511608 BAM harmonized CPTAC3 b48d0c57-1858-4982-9a19-2cd0475d7c36 d59d613ef2d1094f520fa79c0926f165 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor"} -C3N-00383.WXS.A C3N-00383 UCEC WXS tissue_normal CPT0022850009 CPT0022850009.WholeExome.RP-1303.bam 37085865099 BAM aligned CPTAC3 789613cb-e75d-4560-95cf-1df61ba62fa9 c879d0cb1880856f7a444b0044559b4f {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.WXS.A.hg38 C3N-00383 UCEC WXS tissue_normal CPT0022850009 c31e7143-6f53-495b-9ec8-40b1e8200e73_wxs_gdc_realn.bam 51438856605 BAM harmonized CPTAC3 c4aa2702-507d-47d7-b7e0-c5cde301cf00 5416b02dafbd9a4263b45bd30665a562 {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00383.WXS.N C3N-00383 UCEC WXS blood_normal CPT0020790002 CPT0020790002.WholeExome.RP-1303.bam 31801752263 BAM aligned CPTAC3 26faf9ae-c14f-4bae-b84b-4b0ca9c0161b 7ecada4c2311e220b801968064be3827 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal"} -C3N-00383.WXS.N.hg38 C3N-00383 UCEC WXS blood_normal CPT0020790002 37e6dbaf-8495-467a-97d2-931a4061ec47_gdc_realn.bam 43876318693 BAM harmonized CPTAC3 c56e7f63-aeaf-4c1e-8f3c-f17d6308709f 58ea02662eb66dd7bbc9d6dfa4dc4ec8 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal"} -C3N-00383.WXS.T C3N-00383 UCEC WXS tumor CPT0022830006 CPT0022830006.WholeExome.RP-1303.bam 29721573813 BAM aligned CPTAC3 5c4a506f-3e9f-48bc-9013-89232633f467 3aeb99350ebaed98bfdc6592a23c33d8 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor"} -C3N-00383.WXS.T.hg38 C3N-00383 UCEC WXS tumor CPT0022830006 6e9f2a37-b53b-4017-ae76-ac141191ea9c_gdc_realn.bam 40724584612 BAM harmonized CPTAC3 f47e869d-e5af-4f78-a38e-af3bec29cabd 62d436405a7337d3cbd154d75d61220e {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor"} -C3N-00386.MethArray.Green.T C3N-00386 UCEC Methylation_Array tumor CPT0016220009 202184900140_R01C01_Grn.idat 13676262 IDAT Green NA CPTAC3 59334dfd-7bce-4274-b6a5-6151bf3681f8 b2cb3d6cdc6442e7301fd33f8d664551 {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor"} -C3N-00386.MethArray.Red.T C3N-00386 UCEC Methylation_Array tumor CPT0016220009 202184900140_R01C01_Red.idat 13676262 IDAT Red NA CPTAC3 1059e477-0937-45d2-b23e-601b044750bf 1569e0474c68075d3a7df5dd08f859a3 {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor"} -C3N-00386.miRNA-Seq.S36_L002_R1.T C3N-00386 UCEC miRNA-Seq tumor CPT0016220006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCAACA_S36_L002_R1_001.unaln.bam 218294257 BAM S36_L002_R1 unaligned CPTAC3 32d3e699-265c-46f2-b0bb-866b12fb19fa ff1028b96b2da0d69a119da4f8f91670 {"aliquot_tag": "ALQ_69d63d37", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00386.miRNA-Seq.T.hg38 C3N-00386 UCEC miRNA-Seq tumor CPT0016220006 64271378-dce8-4c93-b606-3b7ffdc6cb5c_mirnaseq_gdc_realn.bam 235631699 BAM harmonized CPTAC3 5966008f-f222-49bb-92a0-91d140379001 0eb5d05fa5545ee94a96258efcae0419 {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor"} -C3N-00386.RNA-Seq.chimeric.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.chimeric.gdc_realn.bam 41483803 BAM chimeric harmonized CPTAC3 23bb16a1-9db1-47b9-8812-c2511b0ff287 b668969d1444de2dc55207fd9dc96386 {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor"} -C3N-00386.RNA-Seq.genomic.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.genomic.gdc_realn.bam 5847848047 BAM genomic harmonized CPTAC3 793b4e2e-f176-4efe-bf34-319e9cae6c84 2c895d2c2d2bfbc1665024723baadaec {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor"} -C3N-00386.RNA-Seq.S4_L001_R1.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R1_001.fastq.gz 2686505667 FASTQ S4_L001_R1 unaligned CPTAC3 68aa44a5-d2a6-4ba3-ba6c-0650d6f945f4 b8f32b50ebf35df55f34a025fc1d2a20 {"aliquot_tag": "ALQ_69d63d37", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00386.RNA-Seq.S4_L001_R2.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R2_001.fastq.gz 2747222980 FASTQ S4_L001_R2 unaligned CPTAC3 c5af6b28-5fc3-4a17-bb93-bceb731d1f80 0031607e0c25c1f8c03d1454532754e2 {"aliquot_tag": "ALQ_69d63d37", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00386.RNA-Seq.transcriptome.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.transcriptome.gdc_realn.bam 6074119516 BAM transcriptome harmonized CPTAC3 7bcee864-4694-405c-933f-29bedb30fffb c4f7f67e3a677c9d809feccdc7851263 {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor"} -C3N-00386.WGS.N C3N-00386 UCEC WGS blood_normal CPT0016770002 CPT0016770002.WholeGenome.RP-1303.bam 56469368040 BAM aligned CPTAC3 68dfedf0-0150-4931-bf69-ad8920bc7fdb 3a81962d00cbd0fafe0ec2f20034889f {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00386.WGS.N.hg38 C3N-00386 UCEC WGS blood_normal CPT0016770002 d2d78e06-7a68-485f-a67e-256986fb3006_gdc_realn.bam 81833215150 BAM harmonized CPTAC3 061f7b00-6f79-4554-b725-5778501dbccb db5a948f3f9d69bb35f7941968ffde25 {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00386.WGS.T C3N-00386 UCEC WGS tumor CPT0016220009 CPT0016220009.WholeGenome.RP-1303.bam 60716199101 BAM aligned CPTAC3 4e5155ae-47e4-4e64-9d94-b04be607985b d57bb874d3db18ba3de253463c2e864a {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor"} -C3N-00386.WGS.T.hg38 C3N-00386 UCEC WGS tumor CPT0016220009 86ea43f0-a9c9-47de-959c-d96c72272713_gdc_realn.bam 88603865952 BAM harmonized CPTAC3 160b8957-db23-4cd1-8528-c465bb3739af 51e559b406d15d8b747b7db604e55fda {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor"} -C3N-00386.WXS.N C3N-00386 UCEC WXS blood_normal CPT0016770002 CPT0016770002.WholeExome.RP-1303.bam 19546935662 BAM aligned CPTAC3 8e993334-64df-4f09-b9b3-55487d9af4a8 bf15bfce306e6f90a82528c3210ab51e {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00386.WXS.N.hg38 C3N-00386 UCEC WXS blood_normal CPT0016770002 d2d78e06-7a68-485f-a67e-256986fb3006_gdc_realn.bam 26785724520 BAM harmonized CPTAC3 defc4d49-3f61-4186-8bba-95942de36e01 86d885174fa554bf16f29981990b0c49 {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00386.WXS.T C3N-00386 UCEC WXS tumor CPT0016220009 CPT0016220009.WholeExome.RP-1303.bam 26853212937 BAM aligned CPTAC3 ccff87e8-bc7f-48af-b325-d7a4dfd834a1 3ac8031a447aa07d3e721b89e3a54dbe {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor"} -C3N-00386.WXS.T.hg38 C3N-00386 UCEC WXS tumor CPT0016220009 86ea43f0-a9c9-47de-959c-d96c72272713_gdc_realn.bam 36456611573 BAM harmonized CPTAC3 d7265bb5-d80b-4b5b-a2b6-2faef6b63167 a84ed718bb8166179915a95d8bcf62ac {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor"} -C3N-00388.MethArray.Green.T C3N-00388 UCEC Methylation_Array tumor CPT0016940008 202184900140_R03C01_Grn.idat 13676261 IDAT Green NA CPTAC3 5740e2cf-dac4-4d2b-b727-b2ba10f8316f 40135991ce00695a9e70ed699aab17f1 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor"} -C3N-00388.MethArray.Red.T C3N-00388 UCEC Methylation_Array tumor CPT0016940008 202184900140_R03C01_Red.idat 13676261 IDAT Red NA CPTAC3 3460e5f3-5213-4715-8db0-f4a16a46b65c 49015b378b741a48643354edff944205 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor"} -C3N-00388.miRNA-Seq.S1_L002_R1.T C3N-00388 UCEC miRNA-Seq tumor CPT0016940006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATCACG_S1_L002_R1_001.unaln.bam 264446813 BAM S1_L002_R1 unaligned CPTAC3 5a71c55a-56ce-47fa-b6da-98f0309d164a 10a8a359f54b7bc6589be2c8de32ef81 {"aliquot_tag": "ALQ_8c513854", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00388.miRNA-Seq.T.hg38 C3N-00388 UCEC miRNA-Seq tumor CPT0016940006 8613bd11-1c1d-4b9c-ac3f-2a37296b0b07_mirnaseq_gdc_realn.bam 296389228 BAM harmonized CPTAC3 53a1d687-11dc-4b2b-b608-288b23a155a4 b06a26971d515e5bfccdda8cbb33a640 {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor"} -C3N-00388.RNA-Seq.chimeric.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.chimeric.gdc_realn.bam 38488478 BAM chimeric harmonized CPTAC3 5fda7969-2240-46db-b918-f0f2c5bed301 39eddfeeda7c24ca11fe9cfc35dbec65 {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor"} -C3N-00388.RNA-Seq.genomic.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.genomic.gdc_realn.bam 5681853214 BAM genomic harmonized CPTAC3 fff23231-81eb-4fb5-86dc-57b6ede8b801 fd60a20f804999be636aebae1d6ab955 {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor"} -C3N-00388.RNA-Seq.S19_L005_R1.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2819089574 FASTQ S19_L005_R1 unaligned CPTAC3 c6980525-d030-4169-9393-0f1f73fe04a8 10e18b1dabc2e350e6173aa96e10fa8f {"aliquot_tag": "ALQ_8c513854", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00388.RNA-Seq.S19_L005_R2.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 3037163909 FASTQ S19_L005_R2 unaligned CPTAC3 a989c255-f970-475b-bd15-7b7103241d2a 5d52268f180cd5bc7d5e936924c885dc {"aliquot_tag": "ALQ_8c513854", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00388.RNA-Seq.transcriptome.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.transcriptome.gdc_realn.bam 8936885251 BAM transcriptome harmonized CPTAC3 96b87054-9cfd-42ed-abf0-414883292a7e e97aaae11b65fb0c1b1c72148a576ddd {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor"} -C3N-00388.WGS.N C3N-00388 UCEC WGS blood_normal CPT0017290002 CPT0017290002.WholeGenome.RP-1303.bam 59493957946 BAM aligned CPTAC3 a3aed375-8bfc-4899-8374-78d99f88c99c e6f0bf1f4e6fd66238bf234672a92f1c {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00388.WGS.N.hg38 C3N-00388 UCEC WGS blood_normal CPT0017290002 24dbe8dc-e176-464f-94a0-006aa43bee59_gdc_realn.bam 84661633197 BAM harmonized CPTAC3 ab9ad1e1-c9a1-44a9-b7af-d741d562a6c5 f2042da56c1029ae4c851aeead79ba0f {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00388.WGS.T C3N-00388 UCEC WGS tumor CPT0016940008 CPT0016940008.WholeGenome.RP-1303.bam 70006920964 BAM aligned CPTAC3 ec54ddaf-3001-4f42-a48f-8be5573897e5 f1b35f3305047f2f089df9e1a3217d56 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor"} -C3N-00388.WGS.T.hg38 C3N-00388 UCEC WGS tumor CPT0016940008 2949e6ba-cb37-40b5-a7cf-09978da51025_gdc_realn.bam 101511681450 BAM harmonized CPTAC3 9ef2c309-7943-42d6-9e53-6e0e7186e05a d896fc8248c994c485f1bacb5b3a4571 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor"} -C3N-00388.WXS.N C3N-00388 UCEC WXS blood_normal CPT0017290002 CPT0017290002.WholeExome.RP-1303.bam 49092535536 BAM aligned CPTAC3 61696290-2092-4f8d-9abb-a93ace3dd6bb 2e09b8a740e23f4105854d3fac5bdfd2 {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00388.WXS.N.hg38 C3N-00388 UCEC WXS blood_normal CPT0017290002 24dbe8dc-e176-464f-94a0-006aa43bee59_gdc_realn.bam 66503277260 BAM harmonized CPTAC3 3904884a-aa68-428b-8ed5-76e52c511f38 774ffe53868dfdccbf90426c392ebfe1 {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00388.WXS.T C3N-00388 UCEC WXS tumor CPT0016940008 CPT0016940008.WholeExome.RP-1303.bam 24523394862 BAM aligned CPTAC3 552275c4-18b2-4901-91ee-8abe9ad2f896 a4f720892e065fa13d5de35eda3803bd {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor"} -C3N-00388.WXS.T.hg38 C3N-00388 UCEC WXS tumor CPT0016940008 2949e6ba-cb37-40b5-a7cf-09978da51025_gdc_realn.bam 33329444131 BAM harmonized CPTAC3 168de14c-fd98-4baa-a673-d5ab0db9ad03 1267fc7a4bf76e7e5031c937a37ec166 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor"} -C3N-00389.MethArray.Green.T C3N-00389 UCEC Methylation_Array tumor CPT0026270009 202178770109_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 65395592-d3ea-4cfd-9b57-d13a8331250d cf01da25848fc093f5ff1fc4ab417461 {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor"} -C3N-00389.MethArray.Red.T C3N-00389 UCEC Methylation_Array tumor CPT0026270009 202178770109_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 5cb86881-7452-498c-b81e-b7f193721105 0fb7deee41cfd6ad373d46955a1c5405 {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor"} -C3N-00389.miRNA-Seq.S46_L003_R1.T C3N-00389 UCEC miRNA-Seq tumor CPT0026270006 180924_UNC31-K00269_0154_AHWTMLBBXX_CTTGTA_S46_L003_R1_001.unaln.bam 336681995 BAM S46_L003_R1 unaligned CPTAC3 757bf83d-ac1a-459e-8068-0f101c643ba4 54b9e948d1c6deb62346d3fdf6025a32 {"aliquot_tag": "ALQ_2fb9b5a4", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00389.miRNA-Seq.T.hg38 C3N-00389 UCEC miRNA-Seq tumor CPT0026270006 49106ac7-b595-409e-8731-343873ff382b_mirnaseq_gdc_realn.bam 358128221 BAM harmonized CPTAC3 1b7e6fb0-ef9a-46f2-b59a-35986b9efaf4 b104e482d7733fc76f2b9e8807dd1a2f {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor"} -C3N-00389.RNA-Seq.chimeric.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.chimeric.gdc_realn.bam 41915284 BAM chimeric harmonized CPTAC3 cd413291-21d0-4e5b-9afb-1907f2553318 08dc3d7862aa0b50a201800ffc2c2c8e {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor"} -C3N-00389.RNA-Seq.genomic.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.genomic.gdc_realn.bam 9239958041 BAM genomic harmonized CPTAC3 4fb4f112-7720-4eeb-b71b-01054a51542d 42764f1bbeb139fb66abd941dea5e656 {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor"} -C3N-00389.RNA-Seq.S15_L007_R1.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R1_001.fastq.gz 4604678218 FASTQ S15_L007_R1 unaligned CPTAC3 dd9cffde-1af6-49c4-b230-6b68529c0cab 8e19c7a596c5d2b73df803994dd495a2 {"aliquot_tag": "ALQ_2fb9b5a4", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00389.RNA-Seq.S15_L007_R2.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R2_001.fastq.gz 4591362098 FASTQ S15_L007_R2 unaligned CPTAC3 0a029fc1-cddc-482f-8d17-f1aee87e877f ad540af46ed93a285cb0b8a5ba19a74b {"aliquot_tag": "ALQ_2fb9b5a4", "sample": "S15", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00389.RNA-Seq.transcriptome.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.transcriptome.gdc_realn.bam 9577712664 BAM transcriptome harmonized CPTAC3 b07522df-a529-48b8-b68e-c95971ec35ac 8e345c33e9b8e78cc6194bec4cd156d9 {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor"} -C3N-00389.WGS.N C3N-00389 UCEC WGS blood_normal CPT0026370002 CPT0026370002.WholeGenome.RP-1303.bam 84755426951 BAM aligned CPTAC3 3107c5e6-ce5b-433c-b273-0dfcfe996477 fca235c9ab501b5f35652fa3d2283932 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal"} -C3N-00389.WGS.N.hg38 C3N-00389 UCEC WGS blood_normal CPT0026370002 7306b3df-21f1-45bd-8905-0d6be9035f4d_gdc_realn.bam 123230647807 BAM harmonized CPTAC3 ac7408b2-96a1-4736-8e97-f5ae263c3b21 810672fa3112dc300278db2512df6f39 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal"} -C3N-00389.WGS.T C3N-00389 UCEC WGS tumor CPT0026270009 CPT0026270009.WholeGenome.RP-1303.bam 66183044615 BAM aligned CPTAC3 fea4f804-33eb-44df-9ef2-5fccb8a8f12a 578e3712008da9d1e88a39a7da5c68de {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor"} -C3N-00389.WGS.T.hg38 C3N-00389 UCEC WGS tumor CPT0026270009 5dff9447-7da8-4573-bb38-003f96c1efa7_gdc_realn.bam 95270246574 BAM harmonized CPTAC3 be158832-b452-457b-8964-8ed06a55400f b78a389ce79cc444a0b254fde6ac9c2a {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor"} -C3N-00389.WXS.N C3N-00389 UCEC WXS blood_normal CPT0026370002 CPT0026370002.WholeExome.RP-1303.bam 30683478757 BAM aligned CPTAC3 b6edfded-46d9-4fe0-b25d-d956b242dfc5 9e275efc44a8ecf104c58f454edd03d6 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal"} -C3N-00389.WXS.N.hg38 C3N-00389 UCEC WXS blood_normal CPT0026370002 7306b3df-21f1-45bd-8905-0d6be9035f4d_gdc_realn.bam 41869982416 BAM harmonized CPTAC3 7f94f3b7-bae8-4766-89d3-eb0361fd142c dd1b833481eb54167b626f61a79297c5 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal"} -C3N-00389.WXS.T C3N-00389 UCEC WXS tumor CPT0026270009 CPT0026270009.WholeExome.RP-1303.bam 24899999000 BAM aligned CPTAC3 651675eb-c88d-4b89-a21e-f5bcfd44cc5a 99e184c22689c82e368748c9a4a8cb58 {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor"} -C3N-00389.WXS.T.hg38 C3N-00389 UCEC WXS tumor CPT0026270009 5dff9447-7da8-4573-bb38-003f96c1efa7_gdc_realn.bam 34095382686 BAM harmonized CPTAC3 a84d1048-c1c0-418a-ac9b-efe0b9dcafbe 52cdf0debb6fbeee4fe439328454e87e {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_503b08df.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017380012 204367470157_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fc63d343-b92d-40d1-8193-972b3e694e7c 348f20fcd73e8afdd70ace31a5c002a0 {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_503b08df.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017380012 204367470157_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 dc7fb381-455e-415a-9f7d-714cbf4721d7 8879cf6f4842b482fb33ec5a60e881b6 {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_503b08df.WGS.T C3N-00390 CCRCC WGS tumor CPT0017380012 CPT0017380012.WholeGenome.RP-2158.bam 27255630282 BAM aligned CPTAC3 9e922bd0-a75a-4da6-b09c-b2c42e8ec1a9 82dc66c8717a9de75a1c598a3098163c {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_503b08df.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017380012 db1a7dad-b66d-4d4f-811c-4692fdf6fbcd_wgs_gdc_realn.bam 83431820848 BAM harmonized CPTAC3 475ab387-5aa1-4fde-b24b-c1e1ba45a4d1 d7347d9d2998d9614eba2cbda512266a {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_503b08df.WXS.T C3N-00390 CCRCC WXS tumor CPT0017380012 CPT0017380012.WholeExome.RP-1303.bam 24192277110 BAM aligned CPTAC3 41da4198-c1f7-4caf-a591-8116b66b20de 7c60f31ea4e19ac93aa6e94422799a58 {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_503b08df.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017380012 db1a7dad-b66d-4d4f-811c-4692fdf6fbcd_wxs_gdc_realn.bam 34097857472 BAM harmonized CPTAC3 e439199e-a0ce-4656-9a37-7f2997f06747 8f25de54c03b02e5b3fe3c86bf1bef0f {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_6073daf.miRNA-Seq.S32_L005_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017440009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGAAA_S32_L005_R1_001.unaln.bam 466208123 BAM S32_L005_R1 unaligned CPTAC3 fc1548a0-41df-455b-be9c-53e1afa7d63f b5d17d0238e79a223ec1eeb64e2922de {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_6073daf.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017440009 9de1c65c-40cc-46fa-a66a-4cb8b7e34304_mirnaseq_gdc_realn.bam 519476566 BAM harmonized CPTAC3 9f691639-b9f8-4a78-b1dd-de2750e19d19 8ff2ea12b4ac9c0a9a4b9ea7ad5c35da {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_6073daf.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.chimeric.gdc_realn.bam 213978818 BAM chimeric harmonized CPTAC3 adc72ea4-a200-4942-95d4-ada98d5b716b dff0047aa9997aabd89f407a6529f762 {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_6073daf.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.genomic.gdc_realn.bam 7958427887 BAM genomic harmonized CPTAC3 e6e25830-1df1-4634-bbd6-e5d7af6ba4c3 b7aa29815118ee676e9086fe23c6cc2a {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_6073daf.RNA-Seq.S43_L008_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R1_001.fastq.gz 3657936333 FASTQ S43_L008_R1 unaligned CPTAC3 6cfbe052-98a8-44be-b136-fd587b9881f2 4db0afc7b33ec018165240f301ecf514 {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_6073daf.RNA-Seq.S43_L008_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R2_001.fastq.gz 4275608311 FASTQ S43_L008_R2 unaligned CPTAC3 9184058d-e03e-46e2-88f1-3d5d51929248 b9ff2d1cb39476cbaa21736a1c6c11b0 {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_6073daf.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.transcriptome.gdc_realn.bam 8886131136 BAM transcriptome harmonized CPTAC3 b2618521-711e-451d-a539-b1dc0c66c0e5 508e9a1c0b220a0d1f5f09f21f14629b {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_78e20c6.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017420012 204367470124_R08C01_Grn.idat 13677881 IDAT Green NA CPTAC3 cdab96de-1419-45e0-a8bb-d67bb58d66f5 baf124445156b90307678891758be2f4 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_78e20c6.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017420012 204367470124_R08C01_Red.idat 13677881 IDAT Red NA CPTAC3 7449bb66-f628-430b-8b0a-d3e076f18bb6 07210fa39de89c53d14cce56df5f69fa {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_78e20c6.WGS.T C3N-00390 CCRCC WGS tumor CPT0017420012 CPT0017420012.WholeGenome.RP-2158.bam 27609108145 BAM aligned CPTAC3 42c72b8e-61cf-492f-a27a-2bc89e73456e 7cf8174f9668607b5fb36fe72a542683 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_78e20c6.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017420012 203e9212-0fc2-45f8-8238-7ba61452caae_wgs_gdc_realn.bam 77810035168 BAM harmonized CPTAC3 4f8c9f90-5228-4bd0-a021-64c7f2521db3 f9032c56c1c1d4dccd3fc9895bd0a359 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_78e20c6.WXS.T C3N-00390 CCRCC WXS tumor CPT0017420012 CPT0017420012.WholeExome.RP-1303.bam 24249113360 BAM aligned CPTAC3 d6755e36-61c8-4fbc-999b-1135810dd2aa 88f3825c79b5987589a1d61626208757 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_78e20c6.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017420012 203e9212-0fc2-45f8-8238-7ba61452caae_wxs_gdc_realn.bam 34490604783 BAM harmonized CPTAC3 79d0202e-f476-4bfc-aedd-309aa0316ccd 7ef4c39d14eba022f5409e557cda0499 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_88ced566.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017440012 204372030164_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e4dedb6c-e049-4597-ae05-4a11f8fc3929 a67cb048482693e05f45665823c71d3f {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_88ced566.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017440012 204372030164_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 aadc0509-821b-4158-98d8-d6cfb2c4943e 631ce78fa6d7c1dfb32601c860a13edf {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_88ced566.WGS.T C3N-00390 CCRCC WGS tumor CPT0017440012 CPT0017440012.WholeGenome.RP-2158.bam 29702744447 BAM aligned CPTAC3 8a988595-b43a-4866-86f8-544251cc7247 289092fe9632b4abda883f99a0b5e29c {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_88ced566.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017440012 443fd947-4a68-44ca-9afd-ea88f0c6016e_wgs_gdc_realn.bam 86536604735 BAM harmonized CPTAC3 3bb582b5-ca3a-472c-bedc-ad2685f6b18b 39bdc3c59f20782adb65fb6e14406c8c {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_88ced566.WXS.T C3N-00390 CCRCC WXS tumor CPT0017440012 CPT0017440012.WholeExome.RP-1303.bam 19757924839 BAM aligned CPTAC3 b4b15c62-49ce-484f-98fe-c88cdda5a307 75b493393227757de6b780669dbfb0e3 {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_88ced566.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017440012 443fd947-4a68-44ca-9afd-ea88f0c6016e_wxs_gdc_realn.bam 27670117403 BAM harmonized CPTAC3 2a2a2f8c-3f64-4b8f-a67d-527cb3819fb5 cb050bce477397be4c4285999351ae5a {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_8947c80f.miRNA-Seq.S14_L005_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017420009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L005_R1_001.unaln.bam 285682717 BAM S14_L005_R1 unaligned CPTAC3 86ab0106-c981-433d-a2bd-dc862b97c29d a5f797b74b479a4e986cd1cbce090e5f {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_8947c80f.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017420009 541cdfa9-af97-44fc-b90b-13cc387ec13e_mirnaseq_gdc_realn.bam 320559853 BAM harmonized CPTAC3 4f72ef3d-1c68-438a-b9b0-8931eceab907 238bd05041529efd4529dca167409584 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_8947c80f.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.chimeric.gdc_realn.bam 148676584 BAM chimeric harmonized CPTAC3 eeca3fc5-13cd-415b-b9c7-800d5eefd925 61b1f627111ae9c1e46e56361ddde259 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_8947c80f.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.genomic.gdc_realn.bam 9172421582 BAM genomic harmonized CPTAC3 7e231606-0238-4680-9c1b-ed527887dde4 1baf80ed39fe49d68096ed67f4b87b95 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_8947c80f.RNA-Seq.S44_L008_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R1_001.fastq.gz 4020863735 FASTQ S44_L008_R1 unaligned CPTAC3 905058aa-6424-47a3-b1cf-3f06442145b7 ae7bd894439e0bab3e49e2f610496b52 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_8947c80f.RNA-Seq.S44_L008_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R2_001.fastq.gz 4987980812 FASTQ S44_L008_R2 unaligned CPTAC3 eff14575-0fda-4b6f-8048-c27b0ff25568 d21c6686ec83998a33dc422ca58851ec {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_8947c80f.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.transcriptome.gdc_realn.bam 11986468487 BAM transcriptome harmonized CPTAC3 310ca6aa-33ec-4cd4-ab4a-39a32570e1b3 964f699aeeef7b1d1b5a057acfea3c1d {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_def2e016.miRNA-Seq.S31_L005_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017380009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L005_R1_001.unaln.bam 238255594 BAM S31_L005_R1 unaligned CPTAC3 35b33871-db9a-4d29-a63b-cc55792e404a 64a02ef7c0e601d3d4d4d32f825bfd35 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_def2e016.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017380009 51fff035-90ad-4eb3-8e7e-1ae9aa243110_mirnaseq_gdc_realn.bam 264378862 BAM harmonized CPTAC3 79d2168e-077e-471f-934d-efbed6b9b817 ac0f6e220d0af5027de4b02fa68b397d {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_def2e016.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.chimeric.gdc_realn.bam 298650148 BAM chimeric harmonized CPTAC3 9117e226-8548-405a-830a-ffd00f664d86 38fd23fdcaf1fe8603e8e9e5669d1a68 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_def2e016.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.genomic.gdc_realn.bam 8938890409 BAM genomic harmonized CPTAC3 8dbd9844-56e6-4a64-b8ea-cc29339d8141 29090825d5e4d020f8a85a98b83f3601 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_def2e016.RNA-Seq.S46_L008_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R1_001.fastq.gz 4056712338 FASTQ S46_L008_R1 unaligned CPTAC3 2002689b-cc74-438b-9bbf-cca9f937445e 72e2a1f9eee1925b879d904d9c8deb27 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_def2e016.RNA-Seq.S46_L008_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R2_001.fastq.gz 4819783727 FASTQ S46_L008_R2 unaligned CPTAC3 88c52f10-b800-41ff-bfcc-692c23a2be2e 62cacb3ff570e16f100f97078cd68093 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00390.DUP_def2e016.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.transcriptome.gdc_realn.bam 10824761023 BAM transcriptome harmonized CPTAC3 a66ee1c7-0363-4963-9cf6-8d1aa48e6e9c 2a344be668663b62e890ed061e18cad8 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00390.MethArray.Green.A C3N-00390 CCRCC Methylation_Array tissue_normal CPT0017450009 204930630081_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7fed97a5-6a31-471b-90ad-598b2507c20d 54904cab7ca4ed82c4a6951dfdcb6565 {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017410009 202184900128_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 10d09e53-f69e-41d2-a629-86db69a7f986 046c4148d38cb63f3191123e895e2bac {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor"} -C3N-00390.MethArray.Red.A C3N-00390 CCRCC Methylation_Array tissue_normal CPT0017450009 204930630081_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 96e5a44c-c468-46f2-bb5d-a1a26e096326 129dcb465785bf098ec6e0f9d86de290 {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017410009 202184900128_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 1f8d4f8f-7e54-4a94-bd17-88002f214ea8 7adfedd7f031c5b3e15098104c8bd962 {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor"} -C3N-00390.miRNA-Seq.A.hg38 C3N-00390 CCRCC miRNA-Seq tissue_normal CPT0017450006 b55be229-a96e-4f1f-a147-395da0b008b3_mirnaseq_gdc_realn.bam 240155639 BAM harmonized CPTAC3 be035a8a-2869-4788-b85a-749dc98b26d2 b0e8431c212a35e5e376e4cde7283357 {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.miRNA-Seq.S10_L003_R1.A C3N-00390 CCRCC miRNA-Seq tissue_normal CPT0017450006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L003_R1_001.unaln.bam 219079074 BAM S10_L003_R1 unaligned CPTAC3 366a60c1-8102-477d-ac44-2994e06d3458 8df3c66964f7ccaf5972038b2935e209 {"aliquot_tag": "ALQ_abd8098e", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.miRNA-Seq.S42_L002_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017410006 180924_UNC31-K00269_0154_AHWTMLBBXX_CGATGT_S42_L002_R1_001.unaln.bam 318162379 BAM S42_L002_R1 unaligned CPTAC3 428f0573-8e30-4ecf-a9b6-7b6a20c6d784 2202773bbb391f8e8717518105522ad9 {"aliquot_tag": "ALQ_5e58af4e", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017410006 859a6c1b-29d8-4189-913f-8e84d91908df_mirnaseq_gdc_realn.bam 352327802 BAM harmonized CPTAC3 4669bb34-a110-4a4e-a2ac-43f59cb8532a 2e7df52566986eab981b5a392a1a9529 {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor"} -C3N-00390.RNA-Seq.chimeric.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.chimeric.gdc_realn.bam 56075028 BAM chimeric harmonized CPTAC3 02497492-bea6-4b24-a916-b727c4156ef0 2ed08482684c81f58f96beb0d2dcdb3a {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.chimeric.gdc_realn.bam 100660652 BAM chimeric harmonized CPTAC3 f55db855-edad-4906-bada-a690f6a21659 34149eb9f987caa588012fb70b7160b3 {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor"} -C3N-00390.RNA-Seq.genomic.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.genomic.gdc_realn.bam 7631709814 BAM genomic harmonized CPTAC3 ba21c85d-543b-43dc-b117-8ed2b4d8fc34 3e574f00c48cd1d1b19477dca41ea6f2 {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.genomic.gdc_realn.bam 10407796224 BAM genomic harmonized CPTAC3 4b1618e3-7f50-4b00-b4fe-78bf951edebc 6fc2273296458768b3f10a827ebcc57e {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor"} -C3N-00390.RNA-Seq.S1_L001_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R1_001.fastq.gz 5501332065 FASTQ S1_L001_R1 unaligned CPTAC3 cfd17a8e-5a92-4ef4-9071-8c31a235e709 4ad9cde11d31a7da229c683501c9f9fd {"aliquot_tag": "ALQ_5e58af4e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00390.RNA-Seq.S1_L001_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R2_001.fastq.gz 5718157935 FASTQ S1_L001_R2 unaligned CPTAC3 aac89418-1bdf-4820-b7ad-47d287e141be 7490558949170ebf04fbe6159514f449 {"aliquot_tag": "ALQ_5e58af4e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00390.RNA-Seq.S20_L005_R1.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R1_001.fastq.gz 3719497909 FASTQ S20_L005_R1 unaligned CPTAC3 e043fb64-5301-4a3b-a854-35c982a50471 e12b712f21e9aee59149a524c3a466db {"aliquot_tag": "ALQ_abd8098e", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.RNA-Seq.S20_L005_R2.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R2_001.fastq.gz 4091132493 FASTQ S20_L005_R2 unaligned CPTAC3 b450c8e8-7898-4555-b7f5-3b3921d17b22 3d38d27029fca75c93638aef7e85af29 {"aliquot_tag": "ALQ_abd8098e", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.RNA-Seq.transcriptome.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.transcriptome.gdc_realn.bam 8865769343 BAM transcriptome harmonized CPTAC3 d72e9bf2-11d5-45af-b1e0-a5f666efbc17 255d749e5be03362530e95479b8c611b {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.transcriptome.gdc_realn.bam 15297630830 BAM transcriptome harmonized CPTAC3 dda39e9d-666c-4ec0-8538-9b2c3b7497ed b59d78d08c86f69e963eeff850bfe139 {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor"} -C3N-00390.WGS.A C3N-00390 CCRCC WGS tissue_normal CPT0017450009 CPT0017450009.WholeGenome.RP-1303.bam 62889901487 BAM aligned CPTAC3 c667594d-f7cc-46c0-b9bf-0458ef18ffc4 18aeade146834513125a461fdd9337ad {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.WGS.A.hg38 C3N-00390 CCRCC WGS tissue_normal CPT0017450009 450fa79b-024b-41aa-a4ef-1a34855a5487_wgs_gdc_realn.bam 92562214021 BAM harmonized CPTAC3 506a9a20-816c-416f-9b03-d3d872b42907 1d7e039d3570f7a90f8c26fb282b581c {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.WGS.N C3N-00390 CCRCC WGS blood_normal CPT0017650002 CPT0017650002.WholeGenome.RP-1303.bam 90269581620 BAM aligned CPTAC3 ca2bc7ba-83dc-4d4b-835d-7fe4da983e82 b8665ff60110e061fbcf93e39f40717d {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00390.WGS.N.hg38 C3N-00390 CCRCC WGS blood_normal CPT0017650002 faa668ee-186c-4f91-9d95-174aa0475acc_gdc_realn.bam 132201818668 BAM harmonized CPTAC3 7b1c9847-b2f9-417b-baf7-2fa69338625d 464d9480df02af15857a8989bafd4616 {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00390.WGS.T C3N-00390 CCRCC WGS tumor CPT0017410009 CPT0017410009.WholeGenome.RP-1303.bam 60659777240 BAM aligned CPTAC3 5a0a231c-8a41-46fb-839b-d2d6cef5fcb3 7a4d25bf440b710893cc3146179ecc9e {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor"} -C3N-00390.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017410009 123b51a7-1551-4ff7-99d0-6feb628c4355_gdc_realn.bam 87294339723 BAM harmonized CPTAC3 ce6bee58-46ee-4acf-9ab2-ec0b4d4b99f8 31ca2442921b3ed0ba0bb7abd07f1976 {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor"} -C3N-00390.WXS.A C3N-00390 CCRCC WXS tissue_normal CPT0017450009 CPT0017450009.WholeExome.RP-1303.bam 45929431551 BAM aligned CPTAC3 38c9f3fd-34d6-4998-a84d-aa5d1cef6ffb 67b3b271732ec0451ecf69a0f10753e9 {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.WXS.A.hg38 C3N-00390 CCRCC WXS tissue_normal CPT0017450009 450fa79b-024b-41aa-a4ef-1a34855a5487_wxs_gdc_realn.bam 61626170655 BAM harmonized CPTAC3 00ab82e5-c699-4434-9920-740f58ac3cf6 0e531112c1a5e798e192efaaac8cc50c {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00390.WXS.N C3N-00390 CCRCC WXS blood_normal CPT0017650002 CPT0017650002.WholeExome.RP-1303.bam 28542007894 BAM aligned CPTAC3 ca635872-6db3-4d17-9699-daf3fa6557b8 9fd71c47d1344a551bc5ab6c29fd9d13 {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00390.WXS.N.hg38 C3N-00390 CCRCC WXS blood_normal CPT0017650002 faa668ee-186c-4f91-9d95-174aa0475acc_gdc_realn.bam 38648200944 BAM harmonized CPTAC3 8e18e440-e6bb-4977-89d5-a9dbc941a364 b6c9b9366f24171a1a146ab96b053a74 {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00390.WXS.T C3N-00390 CCRCC WXS tumor CPT0017410009 CPT0017410009.WholeExome.RP-1303.bam 24833283583 BAM aligned CPTAC3 91ee293c-9fef-430d-ba72-6887518c1d8d 23ccff72cf782094c15043bc53d7456a {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor"} -C3N-00390.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017410009 123b51a7-1551-4ff7-99d0-6feb628c4355_gdc_realn.bam 33875116875 BAM harmonized CPTAC3 8fb76fd8-4ac2-445a-bf61-627855d3a69c c62623a4244e100151e27920575275fa {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor"} -C3N-00433.MethArray.Green.T C3N-00433 LUAD Methylation_Array tumor CPT0021450009 202163550076_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 63357ead-633d-4c8f-adec-934492db5b8d 01178c1b93f2a285403050c1d90cf049 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor"} -C3N-00433.MethArray.Red.T C3N-00433 LUAD Methylation_Array tumor CPT0021450009 202163550076_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 73548d4c-54e9-4208-ae5d-ea4b9d48f2f3 978fd4614e0de1f97896de842023ecc5 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor"} -C3N-00433.miRNA-Seq.A.hg38 C3N-00433 LUAD miRNA-Seq tissue_normal CPT0021490006 14291a09-441c-4339-9236-51048cf08527_mirnaseq_gdc_realn.bam 331394218 BAM harmonized CPTAC3 bc37a3c0-b4e7-48fe-bc19-44e31feab1e6 91dcea4b134f921434d8430d73aa81be {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.miRNA-Seq.S22_L003_R1.T C3N-00433 LUAD miRNA-Seq tumor CPT0021450006 180924_UNC31-K00269_0154_AHWTMLBBXX_TGACCA_S22_L003_R1_001.unaln.bam 236719284 BAM S22_L003_R1 unaligned CPTAC3 ad9405c3-d183-4396-8b4e-5334f52f44c6 650245d875d84c01c9537a98d68f8775 {"aliquot_tag": "ALQ_46873b57", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00433.miRNA-Seq.S34_L008_R1.A C3N-00433 LUAD miRNA-Seq tissue_normal CPT0021490006 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L008_R1_001.unaln.bam 302311879 BAM S34_L008_R1 unaligned CPTAC3 828bf798-47a5-4176-b0fb-8c71365c9724 8ad6dcd2d5f97311540083bb7064f19e {"aliquot_tag": "ALQ_8377d656", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.miRNA-Seq.T.hg38 C3N-00433 LUAD miRNA-Seq tumor CPT0021450006 42707b89-4509-45e2-b26f-52e704e2fbe5_mirnaseq_gdc_realn.bam 256536246 BAM harmonized CPTAC3 e25f220e-5e07-4051-8149-8147a914a855 162be80b328f6d81257e43a3e01c684e {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor"} -C3N-00433.RNA-Seq.chimeric.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.chimeric.gdc_realn.bam 69755344 BAM chimeric harmonized CPTAC3 1b26129a-803c-49db-9990-448135fc0442 3c8bb6ad96327bea577a84af64e4aca9 {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.RNA-Seq.chimeric.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.chimeric.gdc_realn.bam 120519758 BAM chimeric harmonized CPTAC3 22a8729c-482d-4509-9596-bd2e8c127623 f74441761b106892f9b309f932374407 {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor"} -C3N-00433.RNA-Seq.genomic.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.genomic.gdc_realn.bam 8815171588 BAM genomic harmonized CPTAC3 d6c613aa-0d42-4030-960f-80bb71d3f739 b6192d31b67c60c2c0451aa1f1a68190 {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.RNA-Seq.genomic.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.genomic.gdc_realn.bam 9029090679 BAM genomic harmonized CPTAC3 24e72fb5-004f-4097-9dfa-d2bbefd49836 a7c5eb70c1f80cba7f23b34e0b4481f4 {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor"} -C3N-00433.RNA-Seq.S1_L001_R1.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R1_001.fastq.gz 4079686548 FASTQ S1_L001_R1 unaligned CPTAC3 c443cb0f-2b18-4dc6-afa3-4fbcd21d8796 922f30ef64f933479069f0aa6c367f20 {"aliquot_tag": "ALQ_8377d656", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.RNA-Seq.S1_L001_R2.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R2_001.fastq.gz 4482697049 FASTQ S1_L001_R2 unaligned CPTAC3 a49dce08-4fbf-4947-94f0-a5de741eb002 90b601b08ee502876a79dfded2432288 {"aliquot_tag": "ALQ_8377d656", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.RNA-Seq.S8_L008_R1.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4231591241 FASTQ S8_L008_R1 unaligned CPTAC3 f75a7f21-ffb6-4781-a55f-11a56b32dc42 6a2fba174985f53b93d9f3124cf6994a {"aliquot_tag": "ALQ_46873b57", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00433.RNA-Seq.S8_L008_R2.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4461495977 FASTQ S8_L008_R2 unaligned CPTAC3 23c754d1-06c3-406f-9fb5-ad1c3a807dc4 77451a64b6b6952464260329841732dd {"aliquot_tag": "ALQ_46873b57", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00433.RNA-Seq.transcriptome.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.transcriptome.gdc_realn.bam 10343631294 BAM transcriptome harmonized CPTAC3 4adc147f-6939-4b06-9bce-9c1f69f0f203 ab74012bfec72d1b563f16f3225f8847 {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.RNA-Seq.transcriptome.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.transcriptome.gdc_realn.bam 9506977441 BAM transcriptome harmonized CPTAC3 573e8655-5aab-4510-8fc1-cc00e6da9069 14984db4e67acdcf00c43fb43b884ccd {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor"} -C3N-00433.WGS.A C3N-00433 LUAD WGS tissue_normal CPT0021490008 CPT0021490008.WholeGenome.RP-1303.bam 37569068335 BAM aligned CPTAC3 422b242a-7059-44ed-ab5d-134196f0969e 2a24c344b525542cd285c3322f52b358 {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.WGS.A.hg38 C3N-00433 LUAD WGS tissue_normal CPT0021490008 839fab3b-2caa-4b89-a38e-506d1ac791da_wgs_gdc_realn.bam 54595861744 BAM harmonized CPTAC3 0a6b9acc-a553-4ec5-8442-88d64b78d378 934d2f1d4aa88c486db1aec7bac7e13c {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.WGS.N C3N-00433 LUAD WGS blood_normal CPT0021500002 CPT0021500002.WholeGenome.RP-1303.bam 70751043349 BAM aligned CPTAC3 1f3b62e0-071f-4dab-91c5-e1d27d30c28a e9ce15e510586cf4b1964117be3e0cf5 {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00433.WGS.N.hg38 C3N-00433 LUAD WGS blood_normal CPT0021500002 d2550193-d082-44fe-a0ec-9ce59f8a06cb_gdc_realn.bam 105176943180 BAM harmonized CPTAC3 072a38fa-c895-45c7-ac58-2135d0c9d426 80bda348e1e09e514363b333f9d679ce {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00433.WGS.T C3N-00433 LUAD WGS tumor CPT0021450009 CPT0021450009.WholeGenome.RP-1303.bam 65742823939 BAM aligned CPTAC3 47b16c04-1565-4f1d-9a32-10bf05f70bf6 38d821cf6f6396e7fba660a174603078 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor"} -C3N-00433.WGS.T.hg38 C3N-00433 LUAD WGS tumor CPT0021450009 2b589dfa-a7ce-4957-ad42-ca2e3d3d9d69_gdc_realn.bam 97391647605 BAM harmonized CPTAC3 c4912afc-de59-4456-b5bc-9d219de452a6 3cb91c4d23a56cf06a0a17585026d329 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor"} -C3N-00433.WXS.A C3N-00433 LUAD WXS tissue_normal CPT0021490008 CPT0021490008.WholeExome.RP-1303.bam 36249237797 BAM aligned CPTAC3 46a3851a-f235-4f2e-9af1-4ef6e7907f02 e890eb42ac29181f35ff02c43126aac2 {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.WXS.A.hg38 C3N-00433 LUAD WXS tissue_normal CPT0021490008 839fab3b-2caa-4b89-a38e-506d1ac791da_wxs_gdc_realn.bam 48610517822 BAM harmonized CPTAC3 b35bffde-a71d-4aa9-a10d-92b8eeced9c5 180d71d03de0f0c658cf3497e5e031be {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00433.WXS.N C3N-00433 LUAD WXS blood_normal CPT0021500002 CPT0021500002.WholeExome.RP-1303.bam 26250270695 BAM aligned CPTAC3 a3e312b1-1486-472d-9f2d-b1dcdf0fb911 4ae2d77269317e7424a2f3e6ab89593f {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00433.WXS.N.hg38 C3N-00433 LUAD WXS blood_normal CPT0021500002 d2550193-d082-44fe-a0ec-9ce59f8a06cb_gdc_realn.bam 35614744578 BAM harmonized CPTAC3 13281c32-408b-4ec9-8c38-9f251e0efa4c 53a874533afb6fa95e31c3cdfa784366 {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00433.WXS.T C3N-00433 LUAD WXS tumor CPT0021450009 CPT0021450009.WholeExome.RP-1303.bam 41291662505 BAM aligned CPTAC3 476db2f2-c495-4590-9f2c-0d1893dcf891 3d95e4e67296c1e0d0eabad07c2a27d4 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor"} -C3N-00433.WXS.T.hg38 C3N-00433 LUAD WXS tumor CPT0021450009 2b589dfa-a7ce-4957-ad42-ca2e3d3d9d69_gdc_realn.bam 56371621618 BAM harmonized CPTAC3 871aa1bb-9e81-4bc8-b766-233e958149ba 6bd4e7079fda747d030530ed1765f83c {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor"} -C3N-00435.MethArray.Green.A C3N-00435 CCRCC Methylation_Array tissue_normal CPT0018250009 204930640051_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2b922a59-f1f2-487a-bf86-385f274991cf 5f9a39b1a164ad67a87e09e124b0f338 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.MethArray.Green.T C3N-00435 CCRCC Methylation_Array tumor CPT0017850009 202176300039_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 895d58a0-02f5-4a76-902b-5a1fa3f20929 0d0c769bd0756b2fabaf9c215cae89c2 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor"} -C3N-00435.MethArray.Red.A C3N-00435 CCRCC Methylation_Array tissue_normal CPT0018250009 204930640051_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 2545d5f3-8f8d-4580-a87e-2d689621b006 5057272b9c9eeba8c59b819c0a952b89 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.MethArray.Red.T C3N-00435 CCRCC Methylation_Array tumor CPT0017850009 202176300039_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 54ab9e6f-0e69-41cd-bbeb-26509f746708 40cf3ddd0a67eddfa29ae18c3b831a19 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor"} -C3N-00435.miRNA-Seq.A.hg38 C3N-00435 CCRCC miRNA-Seq tissue_normal CPT0018250006 8dabc132-6bbf-4e3a-abaa-40889ff0abdb_mirnaseq_gdc_realn.bam 180258471 BAM harmonized CPTAC3 e3c20276-e766-414b-9461-dc361729154f 50726cb15a2f6203a421d77742fe0c5f {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.miRNA-Seq.S11_L003_R1.A C3N-00435 CCRCC miRNA-Seq tissue_normal CPT0018250006 181108_UNC31-K00269_0163_BH23TVBBXY_GGCTAC_S11_L003_R1_001.unaln.bam 163566483 BAM S11_L003_R1 unaligned CPTAC3 37ba18bb-eb4a-4cc3-a51d-eb52ae851968 a9ebbb15d5b23d0c7c2bed2fab3b91be {"aliquot_tag": "ALQ_8bc99a7a", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.miRNA-Seq.S2_L002_R1.T C3N-00435 CCRCC miRNA-Seq tumor CPT0017850006 180924_UNC31-K00269_0154_AHWTMLBBXX_TTAGGC_S2_L002_R1_001.unaln.bam 216405558 BAM S2_L002_R1 unaligned CPTAC3 23f8a827-8654-4259-877d-086e5e9d7d15 5f2e2c7a2fb00b49eaac420eb64b7a12 {"aliquot_tag": "ALQ_dc1ac9f5", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00435.miRNA-Seq.T.hg38 C3N-00435 CCRCC miRNA-Seq tumor CPT0017850006 9bc4abf6-ef04-4d2f-ae84-af0a2dc440b4_mirnaseq_gdc_realn.bam 237293086 BAM harmonized CPTAC3 4d3cd35c-87e0-4c91-8746-329a0ffbe5b2 2222ae22606162ac604b8f7e73d3f2f6 {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor"} -C3N-00435.RNA-Seq.chimeric.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.chimeric.gdc_realn.bam 55328761 BAM chimeric harmonized CPTAC3 bcc1dc01-60b8-499a-b2a6-963101e0a869 6195e7bdf7acdcbbcbc4247485418e73 {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.RNA-Seq.chimeric.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.chimeric.gdc_realn.bam 89125504 BAM chimeric harmonized CPTAC3 445cc183-ed85-40e2-b32b-f9701a0a8ab5 860fa349a2243aa4864c859630948d9a {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor"} -C3N-00435.RNA-Seq.genomic.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.genomic.gdc_realn.bam 9061840231 BAM genomic harmonized CPTAC3 a72e6609-6815-48c5-a388-4f1c0580b09c 43b5076dac9d8b72fdafcf329504b6f7 {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.RNA-Seq.genomic.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.genomic.gdc_realn.bam 13705381160 BAM genomic harmonized CPTAC3 ff0652cc-3fe0-4bb3-b999-8b3dd8f860ba 29c4ba56fdbfa6441dac0d6b110be1bb {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor"} -C3N-00435.RNA-Seq.S15_L004_R1.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R1_001.fastq.gz 3947849920 FASTQ S15_L004_R1 unaligned CPTAC3 b8cc1b1d-0fca-45a7-badd-da4b3b0ea844 d1a091b13ef439b1833150f1cbf77fd3 {"aliquot_tag": "ALQ_8bc99a7a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.RNA-Seq.S15_L004_R2.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R2_001.fastq.gz 4365134017 FASTQ S15_L004_R2 unaligned CPTAC3 cf060020-f277-4eab-8e73-df7259e810eb 2a743b25f97929403739d5c93106e09e {"aliquot_tag": "ALQ_8bc99a7a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.RNA-Seq.S17_L005_R1.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 7003239286 FASTQ S17_L005_R1 unaligned CPTAC3 15172d81-3595-4a42-bf38-ba8b6eee0e8b 167c537035db6f318fc23558360916c8 {"aliquot_tag": "ALQ_dc1ac9f5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00435.RNA-Seq.S17_L005_R2.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 7286704957 FASTQ S17_L005_R2 unaligned CPTAC3 483487b6-8ad1-4d26-906d-72991fdb0324 666514b1e78041e750f30a1c1bf8a7df {"aliquot_tag": "ALQ_dc1ac9f5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00435.RNA-Seq.transcriptome.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.transcriptome.gdc_realn.bam 9071766845 BAM transcriptome harmonized CPTAC3 2e257014-68d3-4246-910d-eeeaec85e62d 6e83a967fa01b8e0c343ec1d89716521 {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.RNA-Seq.transcriptome.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.transcriptome.gdc_realn.bam 19219107554 BAM transcriptome harmonized CPTAC3 9f426c9b-0b79-455f-93e5-33578b95587b 0832c78cc1926df604b633263ddc373e {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor"} -C3N-00435.WGS.A C3N-00435 CCRCC WGS tissue_normal CPT0018250009 CPT0018250009.WholeGenome.RP-1303.bam 61739430767 BAM aligned CPTAC3 2ce30c2c-110a-4431-bc4b-44b9dbf03ea0 b2fffd5f6de10ac40ae3ab9ed073ebf4 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.WGS.A.hg38 C3N-00435 CCRCC WGS tissue_normal CPT0018250009 4166743e-13e1-4732-b790-8e16d69c963d_wgs_gdc_realn.bam 90550331166 BAM harmonized CPTAC3 76c7c9a9-25f9-48b1-b02b-d159aa87c7db 872026079f48513660218248583994f3 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.WGS.N C3N-00435 CCRCC WGS blood_normal CPT0022960002 CPT0022960002.WholeGenome.RP-1303.bam 59165863469 BAM aligned CPTAC3 96d41313-7eee-463a-8e65-9fb4e36fef60 2d74146128162f038475a9f683aa438e {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00435.WGS.N.hg38 C3N-00435 CCRCC WGS blood_normal CPT0022960002 ea11ac1e-a0e5-4531-9282-4337bcc23cee_gdc_realn.bam 85843120165 BAM harmonized CPTAC3 2db4dcfe-4dce-4af9-a962-c33b1a1542f6 a92a77693b04b549c78db6a3d95d7a1a {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00435.WGS.T C3N-00435 CCRCC WGS tumor CPT0017850009 CPT0017850009.WholeGenome.RP-1303.bam 56006211508 BAM aligned CPTAC3 03c7ac8b-1ea8-4655-83e3-3989e987917d 9bcac909f832cab338f14e2dc7554ec6 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor"} -C3N-00435.WGS.T.hg38 C3N-00435 CCRCC WGS tumor CPT0017850009 dd4c27b0-c863-49c4-a6f4-3619af3588ea_gdc_realn.bam 81429017571 BAM harmonized CPTAC3 81278f9d-3eaa-4194-a37d-e528d88261a0 15bf0dfe877b0902cb8f6fcd30517bac {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor"} -C3N-00435.WXS.A C3N-00435 CCRCC WXS tissue_normal CPT0018250009 CPT0018250009.WholeExome.RP-1303.bam 33183525944 BAM aligned CPTAC3 c3552d9e-6398-4fca-a8e1-e87b41988a70 123ad5d532ce707024a17e5d1d13ae9b {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.WXS.A.hg38 C3N-00435 CCRCC WXS tissue_normal CPT0018250009 4166743e-13e1-4732-b790-8e16d69c963d_wxs_gdc_realn.bam 44527283522 BAM harmonized CPTAC3 9f4e4048-f89e-456b-abad-a23c2f39ca5d 020ada93e0f43ff7108df2ddb5468eb6 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00435.WXS.N C3N-00435 CCRCC WXS blood_normal CPT0022960002 CPT0022960002.WholeExome.RP-1303.bam 27139655744 BAM aligned CPTAC3 cb2bcf64-1df6-43e9-b08e-be305448db8e 0e3559c926f69ba8a5e20adaca05bf48 {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00435.WXS.N.hg38 C3N-00435 CCRCC WXS blood_normal CPT0022960002 ea11ac1e-a0e5-4531-9282-4337bcc23cee_gdc_realn.bam 37245564268 BAM harmonized CPTAC3 bcd9b949-9ace-4dc5-9e19-b1d42bd094c3 9fd07207a964aa14173369116ca0d7d7 {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00435.WXS.T C3N-00435 CCRCC WXS tumor CPT0017850009 CPT0017850009.WholeExome.RP-1303.bam 32607472654 BAM aligned CPTAC3 bc321aa7-b1dc-446d-8b25-9a6c6c0fee00 ed8750468fe9821111b3ccc57b532006 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor"} -C3N-00435.WXS.T.hg38 C3N-00435 CCRCC WXS tumor CPT0017850009 dd4c27b0-c863-49c4-a6f4-3619af3588ea_gdc_realn.bam 45630077557 BAM harmonized CPTAC3 65bd2c99-25cf-466d-8516-258224a9fee0 4195d2b2c54c401b8b88206198c55b0d {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor"} -C3N-00436.MethArray.Green.A C3N-00436 PDA Methylation_Array tissue_normal CPT0077880006 203561450114_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c15d351c-f204-472d-99f8-4e95978f8062 9f7f8f7388c6772dab65c867c1717d52 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.MethArray.Green.T C3N-00436 PDA Methylation_Array tumor CPT0077860006 202163530118_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 05ebfea7-6837-47dd-b1ca-173aca45ecdf b2d350e818e812bc0387e9b3bea8ebee {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor"} -C3N-00436.MethArray.Red.A C3N-00436 PDA Methylation_Array tissue_normal CPT0077880006 203561450114_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 8cd4f6c2-577c-452b-b482-7ee0b6bec611 cec7983685f987b1135e2782ec743940 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.MethArray.Red.T C3N-00436 PDA Methylation_Array tumor CPT0077860006 202163530118_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 da5847ac-22f3-4d78-9622-f8495aef74be 6054fd8eafaee875a1948faf15720c7c {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor"} -C3N-00436.miRNA-Seq.A.hg38 C3N-00436 PDA miRNA-Seq tissue_normal CPT0077880009 bd34ac2d-c96a-4e80-9ace-a25e8f90698e_mirnaseq_gdc_realn.bam 228374870 BAM harmonized CPTAC3 0a998255-c134-46c5-abdc-e71f70bf6ac4 b146e6024fb047672baf7f08edd668b3 {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.miRNA-Seq.S27_L002_R1.A C3N-00436 PDA miRNA-Seq tissue_normal CPT0077880009 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 205378312 BAM S27_L002_R1 unaligned CPTAC3 5d8346de-8f03-4f84-9bf3-b6b8f33f8f2a a4dda9e1db56f2fbf10587254ba1c38f {"aliquot_tag": "ALQ_725a1952", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.miRNA-Seq.S47_L007_R1.T C3N-00436 PDA miRNA-Seq tumor CPT0077860009 181012_UNC32-K00270_0124_AH223CBBXY_GTGAAA_S47_L007_R1_001.unaln.bam 249432286 BAM S47_L007_R1 unaligned CPTAC3 0d3a1cb7-f07e-49ad-84ee-2322dbbb9093 f29d1337cc4b74b8af997eb529705cc7 {"aliquot_tag": "ALQ_cd6aa733", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00436.miRNA-Seq.T.hg38 C3N-00436 PDA miRNA-Seq tumor CPT0077860009 de92920b-8193-431a-b759-5f90ae010084_mirnaseq_gdc_realn.bam 276042541 BAM harmonized CPTAC3 97194916-1b82-4264-b617-be4dc306ec6b 8bf197a3f02cbcfc9186cf68a94b8661 {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor"} -C3N-00436.RNA-Seq.chimeric.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.chimeric.gdc_realn.bam 28292611 BAM chimeric harmonized CPTAC3 18ac9dbd-3394-4fc3-b0ae-8d6224dbbb93 ce8a7c870244b074e561baae71999b5f {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.RNA-Seq.chimeric.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.chimeric.gdc_realn.bam 50089637 BAM chimeric harmonized CPTAC3 9cfc9a40-ede8-452a-9028-f20b82d04bf4 3743239ef0d41b5db6c29bcc823fea33 {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor"} -C3N-00436.RNA-Seq.genomic.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.genomic.gdc_realn.bam 8451230046 BAM genomic harmonized CPTAC3 fc2ab034-a761-40eb-a567-e48c08f6716c 4afb98fa26e6ef77f5133443af6d9c71 {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.RNA-Seq.genomic.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.genomic.gdc_realn.bam 9119909784 BAM genomic harmonized CPTAC3 09b915c1-0407-4268-a0fd-ee74e4c23640 0d03e52ebcb3a83e3a3f042de076ff7a {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor"} -C3N-00436.RNA-Seq.S10_L003_R1.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3322009050 FASTQ S10_L003_R1 unaligned CPTAC3 c61650b4-8e2b-4610-87a2-f37dca36095e becb83fe63bf4b61b4658333156b42bc {"aliquot_tag": "ALQ_725a1952", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.RNA-Seq.S10_L003_R2.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3743308271 FASTQ S10_L003_R2 unaligned CPTAC3 69dd24b9-3215-4514-a47c-65525a18fb1e ca140feef1d5ce7a43faeb68d40d26f8 {"aliquot_tag": "ALQ_725a1952", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.RNA-Seq.S6_L008_R1.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 4338613527 FASTQ S6_L008_R1 unaligned CPTAC3 b3772a9b-6281-46fd-bdb2-c3a3e4f58d9c 1c2b70550ea7cebdad08ec3af94f6604 {"aliquot_tag": "ALQ_cd6aa733", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00436.RNA-Seq.S6_L008_R2.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 4775497389 FASTQ S6_L008_R2 unaligned CPTAC3 26f6d911-3b74-4d7b-b299-6a40d33b6d5e f3e728590d82e7fff578c6c28771dd1d {"aliquot_tag": "ALQ_cd6aa733", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00436.RNA-Seq.transcriptome.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.transcriptome.gdc_realn.bam 10449415801 BAM transcriptome harmonized CPTAC3 ff34d7c8-6e22-4e80-a900-edea559cb02a 8de69e723b66739526c2d061a24958ec {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.RNA-Seq.transcriptome.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.transcriptome.gdc_realn.bam 12834584094 BAM transcriptome harmonized CPTAC3 e7c72fac-98e3-4afd-92c4-72554426de5f 9b2682f01d7f57dd78f0dbacd5ebabd8 {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor"} -C3N-00436.WGS.A C3N-00436 PDA WGS tissue_normal CPT0077880006 CPT0077880006.WholeGenome.RP-1303.bam 60900793757 BAM aligned CPTAC3 072c48c4-473c-4a11-8b5d-c2528aced63e 52f39b2b7fd1237fe59d4ec442aa2351 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.WGS.A.hg38 C3N-00436 PDA WGS tissue_normal CPT0077880006 f3556040-be25-4572-92c2-7aa984acd904_wgs_gdc_realn.bam 88079280193 BAM harmonized CPTAC3 7730813b-7def-4440-a692-9070bce32310 f4336435db7b2500203608a1f57173ad {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.WGS.N C3N-00436 PDA WGS blood_normal CPT0077920002 CPT0077920002.WholeGenome.RP-1303.bam 70600735620 BAM aligned CPTAC3 d239588d-0416-4bc5-802b-28a40e6aa77e d3a3de6c8e8550a6dfc59787faeb28d5 {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal"} -C3N-00436.WGS.N.hg38 C3N-00436 PDA WGS blood_normal CPT0077920002 6e6a1556-a864-4c8a-8b63-118a87828c67_gdc_realn.bam 109958822204 BAM harmonized CPTAC3 c493bd42-270b-4cec-959b-1f634dcea8a0 2f198edfaa67f4b3ce02d01231199133 {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal"} -C3N-00436.WGS.T C3N-00436 PDA WGS tumor CPT0077860006 CPT0077860006.WholeGenome.RP-1303.bam 67286043700 BAM aligned CPTAC3 8208058a-cd86-4eef-8bae-24c53d0c744a 467bd7d14a4bf6883fb050a07d0170bd {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor"} -C3N-00436.WGS.T.hg38 C3N-00436 PDA WGS tumor CPT0077860006 aa453f8a-222e-4ede-a0d6-f957897564a2_gdc_realn.bam 100417846565 BAM harmonized CPTAC3 4f3ec54d-5f40-4c05-b239-9ddd5036994b add2c6e02ab7a3933cdf6da842408f72 {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor"} -C3N-00436.WXS.A C3N-00436 PDA WXS tissue_normal CPT0077880006 CPT0077880006.WholeExome.RP-1303.bam 29530243479 BAM aligned CPTAC3 8122f680-c743-4938-8c67-4e4dc6db8d40 1162eda8204116f9729f132d617fa848 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.WXS.A.hg38 C3N-00436 PDA WXS tissue_normal CPT0077880006 f3556040-be25-4572-92c2-7aa984acd904_wxs_gdc_realn.bam 40044030650 BAM harmonized CPTAC3 9576258e-dd99-476c-8933-9717ab8ba126 ab316b5492a8c0a91e0d2ef8ca1f4d25 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00436.WXS.N C3N-00436 PDA WXS blood_normal CPT0077920002 CPT0077920002.WholeExome.RP-1303.bam 36967330812 BAM aligned CPTAC3 ee18f99b-8400-43b1-9fc2-cf3e1b1f8136 a6d3b56fdb436d4d052439e3137d56de {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal"} -C3N-00436.WXS.N.hg38 C3N-00436 PDA WXS blood_normal CPT0077920002 6e6a1556-a864-4c8a-8b63-118a87828c67_gdc_realn.bam 51158353494 BAM harmonized CPTAC3 6eae6ce6-d996-4309-b349-73effa28b1b3 01172562376c5f0a04ceeaf0bebb0b3d {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal"} -C3N-00436.WXS.T C3N-00436 PDA WXS tumor CPT0077860006_1 CPT0077860006_1.WholeExome.RP-1303.bam 60154994611 BAM aligned CPTAC3 b28c0a0c-365c-4ea1-a92e-7a155874cd38 7f35c1a0511f83fb62b72bf3c01de45d {"aliquot_tag": "ALQ_9aa18a72", "gdc_sample_type": "Primary Tumor"} -C3N-00436.WXS.T C3N-00436 PDA WXS tumor CPT0077860006 CPT0077860006.WholeExome.RP-1303.bam 33218772330 BAM aligned CPTAC3 d2aba700-d085-4f3d-9578-8257b52d23a3 bab5439d5e55cf73beec459185ab8f34 {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor"} -C3N-00436.WXS.T.hg38 C3N-00436 PDA WXS tumor CPT0077860006_1 5da59ffb-69f3-4a29-9d0c-aa941f15057d_wxs_gdc_realn.bam 82644942930 BAM harmonized CPTAC3 c3466a86-9bdb-4063-b8bc-4fb78d91ad69 4b522244c89bbaa52403a85ca43ffe8f {"aliquot_tag": "ALQ_9aa18a72", "gdc_sample_type": "Primary Tumor"} -C3N-00436.WXS.T.hg38 C3N-00436 PDA WXS tumor CPT0077860006 aa453f8a-222e-4ede-a0d6-f957897564a2_gdc_realn.bam 45758552239 BAM harmonized CPTAC3 3b06c6f2-da38-4070-a976-3846e692faf4 7b145f1815a273f84fb7a3e9c98d3b66 {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_85641b28.MethArray.Green.T C3N-00437 CCRCC Methylation_Array tumor CPT0012560010 204367490056_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 0de530fe-e661-4e4f-95b1-6016d13be49d 11785bdadc796d5b60bd8f5fca666723 {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_85641b28.MethArray.Red.T C3N-00437 CCRCC Methylation_Array tumor CPT0012560010 204367490056_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 c470c285-526e-423f-8573-80d2c0ffe144 260f9c10528da9c3dc41c7f4a8bfee0d {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_85641b28.WGS.T C3N-00437 CCRCC WGS tumor CPT0012560010 CPT0012560010.WholeGenome.RP-2158.bam 24478256410 BAM aligned CPTAC3 f16344d3-757e-43c1-8533-bee2cdf6c90f bc9ed37476a665b5b63090ab6fba30f0 {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_85641b28.WGS.T.hg38 C3N-00437 CCRCC WGS tumor CPT0012560010 719142ee-ce33-42b3-8695-c9e338027626_wgs_gdc_realn.bam 71366647483 BAM harmonized CPTAC3 6b0b64ef-6240-4243-b1cf-ac200e932a41 7c39a6a40425a72dce7fb99d8da86b7e {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_85641b28.WXS.T C3N-00437 CCRCC WXS tumor CPT0012560010 CPT0012560010.WholeExome.RP-1303.bam 22521243014 BAM aligned CPTAC3 da734df4-1707-44ec-b7cb-8798b6bf5816 7c29062349df4db9717e03e4d2a2e84d {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_85641b28.WXS.T.hg38 C3N-00437 CCRCC WXS tumor CPT0012560010 719142ee-ce33-42b3-8695-c9e338027626_wxs_gdc_realn.bam 30293057639 BAM harmonized CPTAC3 dcb3eefb-67e5-4a14-8807-557a2c21292a d63a2faaa3a3f1353dd73e43f078ddd0 {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_92a4a25b.miRNA-Seq.S20_L006_R1.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012560008 201209_UNC32-K00270_0265_AHJ55WBBXY_TCGAAG_S20_L006_R1_001.unaln.bam 302618730 BAM S20_L006_R1 unaligned CPTAC3 9386465d-7b9e-42da-b20e-6956658c1b97 bfa513e573e55e4e2bb226ba63a8f02d {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_92a4a25b.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012560008 332fc9ba-1bd9-456f-9069-0429decc4ee2_mirnaseq_gdc_realn.bam 325471898 BAM harmonized CPTAC3 b5ad1126-a875-4f9f-8e49-1793df4d1fd1 fcb34d29278f47e31284d9530caa53d0 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_92a4a25b.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.chimeric.gdc_realn.bam 116368411 BAM chimeric harmonized CPTAC3 9a81fb6a-d2fa-4c46-acd9-0d2be5f19094 4060306583e9db1a23409a121a48a3b7 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_92a4a25b.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.genomic.gdc_realn.bam 7728746934 BAM genomic harmonized CPTAC3 a655e51c-b909-4b5a-8c5c-4e47964a1a15 87dcc71182ad09d6ad5f406c18fb5ab7 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_92a4a25b.RNA-Seq.S31_L004_R1.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R1_001.fastq.gz 3754763821 FASTQ S31_L004_R1 unaligned CPTAC3 9ece06e8-9b6d-449b-b2a5-28cf31463fa6 0f787999e7f1e27bb23118ed22dbd8f0 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_92a4a25b.RNA-Seq.S31_L004_R2.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R2_001.fastq.gz 4032261994 FASTQ S31_L004_R2 unaligned CPTAC3 221c7dfb-25d0-4adb-91bb-6e3c82fb6016 f68316bc63dd4b53ae0911c12261f915 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_92a4a25b.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.transcriptome.gdc_realn.bam 10757804779 BAM transcriptome harmonized CPTAC3 37e56a37-fd84-4983-a933-5cdd445309b3 919fecddad387673ffde345bb5baeb7d {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_9f63c1ad.miRNA-Seq.S14_L002_R1.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012540009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L002_R1_001.unaln.bam 235656830 BAM S14_L002_R1 unaligned CPTAC3 4e17be1f-f47c-4e35-8205-bd4eb0f1f9f3 b0649da7954e8bfe3d581042f0e9507e {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_9f63c1ad.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012540009 aa4f8bc2-c67f-4631-9080-730d295a6215_mirnaseq_gdc_realn.bam 258404200 BAM harmonized CPTAC3 cf312980-ca77-4f3d-8f71-403c141584f5 66f016da58cee2463aceee49203a567c {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_9f63c1ad.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.chimeric.gdc_realn.bam 41457552 BAM chimeric harmonized CPTAC3 d5c1ab46-475b-4351-813d-3a42b23bf968 502d0fba3810c3f9c55b6756e85eda66 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_9f63c1ad.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.genomic.gdc_realn.bam 8291733349 BAM genomic harmonized CPTAC3 ae4d3899-9a37-4206-9443-766c70e9bb80 f2cf44545f9bdab6105b02ab087ce5c3 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_9f63c1ad.RNA-Seq.S15_L004_R1.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3625423624 FASTQ S15_L004_R1 unaligned CPTAC3 234117c5-dbee-4918-b6c1-59c141a0f5d9 90d25f10339beff1b837a92442370184 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_9f63c1ad.RNA-Seq.S15_L004_R2.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 4304549373 FASTQ S15_L004_R2 unaligned CPTAC3 144761fd-fe29-4261-98e1-8df138e611cd 77d5a205156708650b147520a0d54567 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_9f63c1ad.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.transcriptome.gdc_realn.bam 9846340222 BAM transcriptome harmonized CPTAC3 58155458-a43a-4b34-8f33-12b1c09ee45a e4bacafba45e4d43cdc9f28cfd09f05b {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_fdcdc3c.MethArray.Green.T C3N-00437 CCRCC Methylation_Array tumor CPT0012540006 204367490029_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0d0c6f62-d319-4b8c-8008-4db5e7bdc13b 6d602bad61b3195eacb758e869b54286 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_fdcdc3c.MethArray.Red.T C3N-00437 CCRCC Methylation_Array tumor CPT0012540006 204367490029_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 ac6af806-1947-4ab8-b2d3-76851222287e af93fedd4826369c9600ed0f2ba5c815 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_fdcdc3c.WGS.T C3N-00437 CCRCC WGS tumor CPT0012540006 CPT0012540006.WholeGenome.RP-2158.bam 23898062220 BAM aligned CPTAC3 de8ee91d-a054-4181-8333-31103188e82c c36dda2c1269a419beb985ac4f1a2ef2 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_fdcdc3c.WGS.T.hg38 C3N-00437 CCRCC WGS tumor CPT0012540006 6999c088-abb7-4095-86c4-8d4ef39c2454_wgs_gdc_realn.bam 70721589610 BAM harmonized CPTAC3 94580492-d9e0-46e1-bfb7-99b791fdb2ad 84ba07700e27d29d0c12e95eb962692b {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_fdcdc3c.WXS.T C3N-00437 CCRCC WXS tumor CPT0012540006 CPT0012540006.WholeExome.RP-1303.bam 20687437390 BAM aligned CPTAC3 98f5b847-70ea-42d8-bbd5-be8ab0de8a42 c45665bcff021cb694381d9ef55e7045 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.DUP_fdcdc3c.WXS.T.hg38 C3N-00437 CCRCC WXS tumor CPT0012540006 6999c088-abb7-4095-86c4-8d4ef39c2454_wxs_gdc_realn.bam 28128592894 BAM harmonized CPTAC3 b8720f73-4cf1-4f6f-815c-fc875ab88e5d 56cde2611b1dcd3ca702076e4a9f1303 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00437.MethArray.Green.A C3N-00437 CCRCC Methylation_Array tissue_normal CPT0012570009 204930640122_R06C01_Grn.idat 13677965 IDAT Green NA CPTAC3 687201e2-dd66-4db5-be4e-ff5c13e9bf4e 3a52c5f64f5a545169027d50c77cd950 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00437.MethArray.Green.T C3N-00437 CCRCC Methylation_Array tumor CPT0012550008 202184900110_R01C01_Grn.idat 13676256 IDAT Green NA CPTAC3 f5a97070-fb0b-40a8-a0de-39e8a3c8d34f 6e29b3964bab4b83389f4a3fbd430f4f {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor"} -C3N-00437.MethArray.Red.A C3N-00437 CCRCC Methylation_Array tissue_normal CPT0012570009 204930640122_R06C01_Red.idat 13677965 IDAT Red NA CPTAC3 3a734ed6-412c-4c5b-83f9-d2df10cf8941 a32b4ebb831a2a728e1dc3bd9abc4c71 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00437.MethArray.Red.T C3N-00437 CCRCC Methylation_Array tumor CPT0012550008 202184900110_R01C01_Red.idat 13676256 IDAT Red NA CPTAC3 8e99e4f6-80ba-4e80-8fb9-c818b7d68ff4 d1e5f1ad3fd6a01051bcd6404da15b1a {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor"} -C3N-00437.miRNA-Seq.S41_L002_R1.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012550006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACCGG_S41_L002_R1_001.unaln.bam 270101613 BAM S41_L002_R1 unaligned CPTAC3 f4fb1bc7-28df-4e3a-bfe3-f995d38aaf24 fd4d3a93631d5990ded8ae2df0fc1bdf {"aliquot_tag": "ALQ_32bcf58c", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00437.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012550006 0cc646da-cd28-4839-a3ee-0403750b9afd_mirnaseq_gdc_realn.bam 296835071 BAM harmonized CPTAC3 effa6589-8519-422b-830b-9a0e1c38cf9a a89c3c0f62b15f107f7844f4a95d0a8a {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor"} -C3N-00437.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.chimeric.gdc_realn.bam 72977355 BAM chimeric harmonized CPTAC3 84a9f958-2476-43b0-8d1b-66d82d0c4045 f08df8dedcafce4ce33bafd7ab7cb0d8 {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor"} -C3N-00437.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.genomic.gdc_realn.bam 9669935407 BAM genomic harmonized CPTAC3 08dc4815-8d24-4c09-8fe8-14ea1416e06d 287345e8670e8dc21de9790d357cc73d {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor"} -C3N-00437.RNA-Seq.S13_L005_R1.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R1_001.fastq.gz 4652417529 FASTQ S13_L005_R1 unaligned CPTAC3 b7908b71-b7fa-45ce-bde6-a99a873c5759 cb03bbc425ea827a0f42b44e6d8e5295 {"aliquot_tag": "ALQ_32bcf58c", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00437.RNA-Seq.S13_L005_R2.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R2_001.fastq.gz 4976163068 FASTQ S13_L005_R2 unaligned CPTAC3 21aa8b4d-b7a4-4d24-8edf-b9fc75b24f41 b7d2365225dc0c00e26de0a9ff61d17d {"aliquot_tag": "ALQ_32bcf58c", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00437.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.transcriptome.gdc_realn.bam 13224294905 BAM transcriptome harmonized CPTAC3 1707d01f-b5b5-4399-b4af-0e13ec77d9b9 eee537a470c2101f3e5270dc99bdf60d {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor"} -C3N-00437.WGS.A C3N-00437 CCRCC WGS tissue_normal CPT0012570009 CPT0012570009.WholeGenome.RP-1303.bam 66638247936 BAM aligned CPTAC3 c7b2ed32-9221-4de8-90f6-8b2a40a4f627 01d2c15c1cadf3856ac1afb034a0795e {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00437.WGS.A.hg38 C3N-00437 CCRCC WGS tissue_normal CPT0012570009 044f57af-6c7b-4e34-8820-cbba46ebfb0c_wgs_gdc_realn.bam 98395098606 BAM harmonized CPTAC3 e6dfbbc9-226c-4084-ba47-d99816424306 3a1b88b50cf1d80cc29b92c1686a5232 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00437.WGS.N C3N-00437 CCRCC WGS blood_normal CPT0012620002 CPT0012620002.WholeGenome.RP-1303.bam 59814501084 BAM aligned CPTAC3 dcf3a6a6-34d4-47d6-9f5f-d1be7ad9cf1c 09ceac2d14f1f7e633efbec2e3cace80 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00437.WGS.N.hg38 C3N-00437 CCRCC WGS blood_normal CPT0012620002 8f1d580e-0c91-4789-bdff-2e27ae821366_gdc_realn.bam 85478369692 BAM harmonized CPTAC3 91edb936-132b-4154-8286-e5205742c127 89d67b2080690667a052b8e45dca0910 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00437.WGS.T C3N-00437 CCRCC WGS tumor CPT0012550008 CPT0012550008.WholeGenome.RP-1303.bam 71523383378 BAM aligned CPTAC3 6ce2508a-4cf9-4780-bdff-93835c7c218b afc60e9e9050f2cd22a034debb1eff08 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor"} -C3N-00437.WGS.T.hg38 C3N-00437 CCRCC WGS tumor CPT0012550008 f17d580b-fab7-45ed-90cf-2ad70cf8cd3f_gdc_realn.bam 103857942385 BAM harmonized CPTAC3 af9ecf1b-3a85-4b16-99cf-82b8be4f7f9a 793a170fa36d7b19107912fda4338317 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor"} -C3N-00437.WXS.A C3N-00437 CCRCC WXS tissue_normal CPT0012570009 CPT0012570009.WholeExome.RP-1303.bam 30467402258 BAM aligned CPTAC3 a38e1439-7b21-49d1-9dcf-79f656d16325 4eab0a3a7123b126ad9579ed0c77f671 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00437.WXS.A.hg38 C3N-00437 CCRCC WXS tissue_normal CPT0012570009 044f57af-6c7b-4e34-8820-cbba46ebfb0c_wxs_gdc_realn.bam 41646061538 BAM harmonized CPTAC3 ab787fb6-f198-4e20-9b9f-42779c805bb5 c065b56993c1a91e43fa5e9ac1c6f3a2 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00437.WXS.N C3N-00437 CCRCC WXS blood_normal CPT0012620002 CPT0012620002.WholeExome.RP-1303.bam 24033926439 BAM aligned CPTAC3 e7e7db1b-6107-4cfb-a503-5603e2973c2f 1c9127489a622c2a748b7c58ed8b2656 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00437.WXS.N.hg38 C3N-00437 CCRCC WXS blood_normal CPT0012620002 8f1d580e-0c91-4789-bdff-2e27ae821366_gdc_realn.bam 32989308648 BAM harmonized CPTAC3 b67db00d-1f85-4283-9a26-b629f2cc3726 d4fde10b2c0bd51e9c7de9b1fbd39b73 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00437.WXS.T C3N-00437 CCRCC WXS tumor CPT0012550008 CPT0012550008.WholeExome.RP-1303.bam 29801346626 BAM aligned CPTAC3 3d7b8a74-c30c-416c-b03c-db5bb052947a 1ce2b1f331bfc309bcde844dc9841924 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor"} -C3N-00437.WXS.T.hg38 C3N-00437 CCRCC WXS tumor CPT0012550008 f17d580b-fab7-45ed-90cf-2ad70cf8cd3f_gdc_realn.bam 40762163012 BAM harmonized CPTAC3 96724a7e-9a99-4ad2-b1da-1d2d28200609 d69d52c517a8e647817d2b6dcc9ec156 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor"} -C3N-00438.MethArray.Green.T C3N-00438 CCRCC Methylation_Array tumor CPT0379430007 205589740003_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9cd65426-b8d7-45de-8438-11d972763e9f a68b5f8b60503cded11f1548a1efd0c9 {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor"} -C3N-00438.MethArray.Red.T C3N-00438 CCRCC Methylation_Array tumor CPT0379430007 205589740003_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 a60dae0c-0b24-467f-b9d8-8e3d9490fab3 8c57ccc8408323ccbd6f8af8d1dc9b60 {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor"} -C3N-00438.miRNA-Seq.S31_L003_R1.T C3N-00438 CCRCC miRNA-Seq tumor CPT0379430010 210111_UNC32-K00270_0270_AHJ5LKBBXY_GACGAC_S31_L003_R1_001.unaln.bam 296769466 BAM S31_L003_R1 unaligned CPTAC3 f359066a-ad68-4afc-b8cc-ac933126a5d5 777bdcb38dd6fdf2951973561a5555df {"aliquot_tag": "ALQ_7b3d2645", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00438.miRNA-Seq.T.hg38 C3N-00438 CCRCC miRNA-Seq tumor CPT0379430010 49e4238d-97a3-4619-84d3-123c6d98454e_mirnaseq_gdc_realn.bam 313420359 BAM harmonized CPTAC3 a6a1db3b-9b04-420c-8c85-1d77c15660ac 9a0575237f21b8d36a4ec60e1c1d70a5 {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor"} -C3N-00438.RNA-Seq.chimeric.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.chimeric.gdc_realn.bam 169194204 BAM chimeric harmonized CPTAC3 fa586c68-63cf-4fe2-8aa9-2cbcc93bbaae 47a8d6b8797423d7fecda66765132487 {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor"} -C3N-00438.RNA-Seq.genomic.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.genomic.gdc_realn.bam 7776648600 BAM genomic harmonized CPTAC3 f24d86ec-55b2-4e87-80be-01c378787f01 54b6ccd6f46e9e465ed05e25aa740923 {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor"} -C3N-00438.RNA-Seq.S15_L005_R1.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R1_001.fastq.gz 3922735352 FASTQ S15_L005_R1 unaligned CPTAC3 9210d9a2-1799-4811-9bf5-5ebeb3ec344f 9fb19271831252475f03c6b31e5bd6f8 {"aliquot_tag": "ALQ_7b3d2645", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00438.RNA-Seq.S15_L005_R2.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R2_001.fastq.gz 4212708708 FASTQ S15_L005_R2 unaligned CPTAC3 75659dbc-4d83-4323-86a9-a732e2e721d7 8f1a8a22bb6d7715efdc52a8068db9fa {"aliquot_tag": "ALQ_7b3d2645", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00438.RNA-Seq.transcriptome.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.transcriptome.gdc_realn.bam 10779869644 BAM transcriptome harmonized CPTAC3 b6f909b4-210d-4cf5-a5ee-d4e3681d644b 080aebce28cac4198dcac5c085cef6de {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor"} -C3N-00438.WGS.N C3N-00438 CCRCC WGS blood_normal CPT0379460002 CPT0379460002.WholeGenome.RP-2158.bam 25860061714 BAM aligned CPTAC3 0046a886-4dd0-4b02-94ce-43ed3e7e5ada 87339751b7a6eeeee40554a53ed87a2c {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal"} -C3N-00438.WGS.N.hg38 C3N-00438 CCRCC WGS blood_normal CPT0379460002 684074a3-34eb-4056-ae6d-1746fd762208_wgs_gdc_realn.bam 78548658835 BAM harmonized CPTAC3 b2c12667-2d5d-4f4d-a78b-ca3261e10110 942d7aa74780d208f0d5e453557c01e3 {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal"} -C3N-00438.WGS.T C3N-00438 CCRCC WGS tumor CPT0379430007 CPT0379430007.WholeGenome.RP-2158.bam 31052675736 BAM aligned CPTAC3 cefff43d-3ad9-4eea-a8de-608bc79bb8c7 821e4aa06ebc447c526dd379a0eb3e8f {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor"} -C3N-00438.WGS.T.hg38 C3N-00438 CCRCC WGS tumor CPT0379430007 f81b19a8-48b8-46cf-9bec-dfcd9b4b5422_wgs_gdc_realn.bam 92651784988 BAM harmonized CPTAC3 81cf2842-cf87-45bf-9b85-90f2ea3db8a5 4fc28f8476ae62689471291c1b171c8c {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor"} -C3N-00438.WXS.N C3N-00438 CCRCC WXS blood_normal CPT0379460002 CPT0379460002.WholeExome.RP-1303.bam 24544242719 BAM aligned CPTAC3 47c9908e-c5da-432b-99a0-a45b6f26cc10 e07399551eb2710e762ae9782375e1a7 {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal"} -C3N-00438.WXS.N.hg38 C3N-00438 CCRCC WXS blood_normal CPT0379460002 684074a3-34eb-4056-ae6d-1746fd762208_wxs_gdc_realn.bam 34000357389 BAM harmonized CPTAC3 a69f4df8-531f-4b29-9841-b515bc1bf81e 3d506ee0d71285ead2d7d9ad21009d71 {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal"} -C3N-00438.WXS.T C3N-00438 CCRCC WXS tumor CPT0379430007 CPT0379430007.WholeExome.RP-1303.bam 19850471142 BAM aligned CPTAC3 dae8df85-70b5-4e69-a0f4-19e61192a933 025a53cd2294e9119f490295952f0beb {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor"} -C3N-00438.WXS.T.hg38 C3N-00438 CCRCC WXS tumor CPT0379430007 f81b19a8-48b8-46cf-9bec-dfcd9b4b5422_wxs_gdc_realn.bam 27271920206 BAM harmonized CPTAC3 c3706227-e7b3-4aee-977d-c1120230677b 2741a104232a31b96290d01d03c4bcd7 {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor"} -C3N-00439.MethArray.Green.A C3N-00439 CCRCC Methylation_Array tissue_normal CPT0379510007 205555380161_R05C01_Grn.idat 13677960 IDAT Green NA CPTAC3 16a71379-9ce4-4eb3-982c-d2353e3d89bc 0607fb806fcb0fabfc63a4842626c3fd {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00439.MethArray.Green.T C3N-00439 CCRCC Methylation_Array tumor CPT0379480010 205555380161_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 31a58a32-5ba0-43e3-8690-2f2e3cb9ad81 7ebb54ae00b66133c1c1073d2aa4d11c {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor"} -C3N-00439.MethArray.Red.A C3N-00439 CCRCC Methylation_Array tissue_normal CPT0379510007 205555380161_R05C01_Red.idat 13677960 IDAT Red NA CPTAC3 fdeda4dc-15ab-4507-9f31-5006afe77d51 50877822b0b2534581522f9261050bed {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00439.MethArray.Red.T C3N-00439 CCRCC Methylation_Array tumor CPT0379480010 205555380161_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 d35a042c-81a2-4145-aa71-4aadf9160a74 e54722de86f6e511920d973707df5fcc {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor"} -C3N-00439.miRNA-Seq.S37_L003_R1.T C3N-00439 CCRCC miRNA-Seq tumor CPT0379480007 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGAAG_S37_L003_R1_001.unaln.bam 350454256 BAM S37_L003_R1 unaligned CPTAC3 da88d0a5-45c0-4c3b-a43b-0efe761e48cf b3ef15c7fe3f8f054f9ca0e98bf73ce9 {"aliquot_tag": "ALQ_8b92b3b6", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00439.miRNA-Seq.T.hg38 C3N-00439 CCRCC miRNA-Seq tumor CPT0379480007 d1e7532c-3928-4eeb-bdeb-2c9257da9043_mirnaseq_gdc_realn.bam 376592677 BAM harmonized CPTAC3 3faad217-423d-4e56-92d3-860a853daf6f 0283c8834319682e46c061a2546253a0 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor"} -C3N-00439.RNA-Seq.chimeric.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.chimeric.gdc_realn.bam 239250074 BAM chimeric harmonized CPTAC3 717ebbb6-31f2-4e3e-9911-5e6af769fe74 14899df8548c3710966576eb9ea57518 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor"} -C3N-00439.RNA-Seq.genomic.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.genomic.gdc_realn.bam 7774010010 BAM genomic harmonized CPTAC3 2851ce19-7348-49d3-8f06-ec261d3e27ff 2d500d1d081a3ff8f904601478abf0d3 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor"} -C3N-00439.RNA-Seq.S10_L004_R1.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R1_001.fastq.gz 3476102077 FASTQ S10_L004_R1 unaligned CPTAC3 d8da199c-0cc2-4309-bc89-fe4b9c98fab7 31c355e5c168182488e293475ec7fe99 {"aliquot_tag": "ALQ_8b92b3b6", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00439.RNA-Seq.S10_L004_R2.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R2_001.fastq.gz 3876391287 FASTQ S10_L004_R2 unaligned CPTAC3 1b720778-8404-4f33-a358-821f2e4f9777 8c8c00abcf8dcab501829f87df3984d7 {"aliquot_tag": "ALQ_8b92b3b6", "sample": "S10", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00439.RNA-Seq.transcriptome.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.transcriptome.gdc_realn.bam 6343453525 BAM transcriptome harmonized CPTAC3 967d23b0-1261-4331-9f09-6def6ddc4605 d3ee234d421ad25d19565a690a5652c6 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor"} -C3N-00439.scRNA-Seq.S4_L002_R1.T C3N-00439 CCRCC scRNA-Seq tumor CPT0379480005 20220127_WUSTL_TWFU-CPT0379480005-Y1N1Z1_1Bn1_1_ATAGGGCGAG+TGCATCGAGT_S4_L002_R1_001.fastq.gz 5308570857 FASTQ S4_L002_R1 unaligned CPTAC3 cec6c9e9-5605-440e-b4b0-1eafd0837f2c ef8c94d4196cb6999ef50fb418dbd0d1 {"aliquot_tag": "ALQ_659cd29a", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00439.scRNA-Seq.S4_L002_R2.T C3N-00439 CCRCC scRNA-Seq tumor CPT0379480005 20220127_WUSTL_TWFU-CPT0379480005-Y1N1Z1_1Bn1_1_ATAGGGCGAG+TGCATCGAGT_S4_L002_R2_001.fastq.gz 18328318712 FASTQ S4_L002_R2 unaligned CPTAC3 99caff09-18db-46e5-a793-a352e1b92e4d 707452d44d87504f8571ee62c07becd2 {"aliquot_tag": "ALQ_659cd29a", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00439.WGS.N C3N-00439 CCRCC WGS blood_normal CPT0379570002 CPT0379570002.WholeGenome.RP-2158.bam 28922239242 BAM aligned CPTAC3 aa566fab-6e2c-436d-b470-eb2d53002255 cfdf45675574c5d997ab5777e1faf8d7 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00439.WGS.N.hg38 C3N-00439 CCRCC WGS blood_normal CPT0379570002 9895ad60-a9ed-4923-8405-36f7bbfbac98_wgs_gdc_realn.bam 88060239999 BAM harmonized CPTAC3 159352a4-acac-430d-8389-1491f5fc1dd7 02e2b402a38bce9a5281617365a6c993 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00439.WGS.T C3N-00439 CCRCC WGS tumor CPT0379480010 CPT0379480010.WholeGenome.RP-2158.bam 32821041446 BAM aligned CPTAC3 e6af19b8-c939-44c8-b0bb-b1fec6477bfe 4cd63d82c51a304d9e47dadb16b359e1 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor"} -C3N-00439.WGS.T.hg38 C3N-00439 CCRCC WGS tumor CPT0379480010 83e8a157-3c06-4c3d-9cd9-558cba89c314_wgs_gdc_realn.bam 102313888680 BAM harmonized CPTAC3 7320615f-f97a-4b3f-9aa8-ebb477add16c 5a5ddc80f1b1139e544040096997b515 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor"} -C3N-00439.WXS.A C3N-00439 CCRCC WXS tissue_normal CPT0379510007 CPT0379510007.WholeExome.RP-1303.bam 23024297567 BAM aligned CPTAC3 2500e877-9385-4627-9807-2a7a2d4aeacb 2031621f2eb5bc9af836e2e1b6575f8f {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00439.WXS.A.hg38 C3N-00439 CCRCC WXS tissue_normal CPT0379510007 f4746b23-44e4-4a96-88b0-00523d65941f_wxs_gdc_realn.bam 31946092131 BAM harmonized CPTAC3 c8d0995a-60b4-49ef-9ca7-9e781849da9c 6bacd9ac60fc91fe4e0857ac7f16a7cb {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00439.WXS.N C3N-00439 CCRCC WXS blood_normal CPT0379570002 CPT0379570002.WholeExome.RP-1303.bam 22386079062 BAM aligned CPTAC3 40628b62-3fc6-4924-ad15-b03917f316e2 eb8ebce52650933d709d77269229d8b0 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00439.WXS.N.hg38 C3N-00439 CCRCC WXS blood_normal CPT0379570002 9895ad60-a9ed-4923-8405-36f7bbfbac98_wxs_gdc_realn.bam 30893236980 BAM harmonized CPTAC3 7b515dc9-e674-4429-a972-dc2881b2d808 fa576ee50d863775b005b11f9ef54f23 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00439.WXS.T C3N-00439 CCRCC WXS tumor CPT0379480010 CPT0379480010.WholeExome.RP-1303.bam 24587835851 BAM aligned CPTAC3 7d736e56-5c02-4864-9558-6fe41ad19f09 3a265d63ecd1bcf4d303763f9f6cc1a8 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor"} -C3N-00439.WXS.T.hg38 C3N-00439 CCRCC WXS tumor CPT0379480010 83e8a157-3c06-4c3d-9cd9-558cba89c314_wxs_gdc_realn.bam 33968896771 BAM harmonized CPTAC3 61b0760a-8be3-48d8-8cf8-ed7ea80223e7 e914ddd5419088d885d253ad02004d73 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor"} -C3N-00440.MethArray.Green.T C3N-00440 CCRCC Methylation_Array tumor CPT0379590007 205555390157_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e593e721-b024-44a1-81cb-74d1ad2d18eb 2773378f0aa95773e7d2de1014e65344 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor"} -C3N-00440.MethArray.Red.T C3N-00440 CCRCC Methylation_Array tumor CPT0379590007 205555390157_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 62a63f33-a05d-46ce-85c4-e93d7c8aa738 b4e669c051bd02be1632f2aee2e7ad6c {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor"} -C3N-00440.miRNA-Seq.S32_L003_R1.T C3N-00440 CCRCC miRNA-Seq tumor CPT0379590010 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAATCG_S32_L003_R1_001.unaln.bam 286413272 BAM S32_L003_R1 unaligned CPTAC3 c80ce0e9-a709-4347-8fff-b6c0c7aa9a0b 3622928a3f2acaa014cd5b7540a21824 {"aliquot_tag": "ALQ_fad1ed41", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00440.miRNA-Seq.T.hg38 C3N-00440 CCRCC miRNA-Seq tumor CPT0379590010 63c7f828-b880-4837-9d33-c01dfbad5d2c_mirnaseq_gdc_realn.bam 314173712 BAM harmonized CPTAC3 e97f22a2-bda8-4625-8a1a-b2629244480a d30d6c0a3ecf6c95da80298b879697d1 {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor"} -C3N-00440.RNA-Seq.chimeric.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.chimeric.gdc_realn.bam 445625343 BAM chimeric harmonized CPTAC3 fdf786a6-dc56-45bf-b347-02f0fae23bea 85ab3b6c69e958e26099338d8239a0d6 {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor"} -C3N-00440.RNA-Seq.genomic.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.genomic.gdc_realn.bam 8736395036 BAM genomic harmonized CPTAC3 2294d2a2-334e-49df-918c-c2c359f40770 c3baf874722e044cc5c915304baeb83e {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor"} -C3N-00440.RNA-Seq.S16_L005_R1.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R1_001.fastq.gz 4211639778 FASTQ S16_L005_R1 unaligned CPTAC3 0348b2b8-436b-4639-bdaf-40055f305e33 cdbcbb35e9564a0d08956a130971e354 {"aliquot_tag": "ALQ_fad1ed41", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00440.RNA-Seq.S16_L005_R2.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R2_001.fastq.gz 4644340351 FASTQ S16_L005_R2 unaligned CPTAC3 5e9f02c8-b9eb-4052-a157-246587d91d0b 2a641211dd7d93c47ed49b06462a0797 {"aliquot_tag": "ALQ_fad1ed41", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00440.RNA-Seq.transcriptome.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.transcriptome.gdc_realn.bam 9544738303 BAM transcriptome harmonized CPTAC3 7042f72f-cb9a-4a5d-89cb-4ce7f74e3c7e 52270d491fdc710552f6df66e1f9c408 {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor"} -C3N-00440.WGS.N C3N-00440 CCRCC WGS blood_normal CPT0379620002 CPT0379620002.WholeGenome.RP-2158.bam 35460612041 BAM aligned CPTAC3 240b2e4d-e444-4be2-b940-339fe2809293 52dc114754f4f87fb024ae99d19ac21c {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00440.WGS.N.hg38 C3N-00440 CCRCC WGS blood_normal CPT0379620002 e1f2cc11-b51a-4c43-9f43-711388ed0bf1_wgs_gdc_realn.bam 102881587761 BAM harmonized CPTAC3 c572aeac-e69f-43a0-aabc-144a4a239427 7c3a3fa0af0cfbcb65c5c1346d1599a7 {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00440.WGS.T C3N-00440 CCRCC WGS tumor CPT0379590007 CPT0379590007.WholeGenome.RP-2158.bam 21566140388 BAM aligned CPTAC3 154513e7-6da2-4442-a263-9788d0d50e32 c59d618ace2d519fc38a759a4072fb41 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor"} -C3N-00440.WGS.T.hg38 C3N-00440 CCRCC WGS tumor CPT0379590007 2fd4e91c-35f9-4493-b4e7-03a44047d1a1_wgs_gdc_realn.bam 64610997425 BAM harmonized CPTAC3 4affe234-7699-44cd-8e91-626d47876142 0acb5af75152c8775825dda73765b666 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor"} -C3N-00440.WXS.N C3N-00440 CCRCC WXS blood_normal CPT0379620002 CPT0379620002.WholeExome.RP-1303.bam 23652486375 BAM aligned CPTAC3 a113bcf3-e2f8-479b-b295-d26ef8e66e4b 702b8b172d83293386bfd39116c9f7f7 {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00440.WXS.N.hg38 C3N-00440 CCRCC WXS blood_normal CPT0379620002 e1f2cc11-b51a-4c43-9f43-711388ed0bf1_wxs_gdc_realn.bam 32823392335 BAM harmonized CPTAC3 936a305c-09eb-45e2-8946-2316fcbe3efe d6278cfc95008a67999eee9a4e3456a2 {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00440.WXS.T C3N-00440 CCRCC WXS tumor CPT0379590007 CPT0379590007.WholeExome.RP-1303.bam 22529725564 BAM aligned CPTAC3 68ef5feb-0801-4f3d-9bdd-9e73176cc912 ba55afaa083690619de1ba4a4f669b76 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor"} -C3N-00440.WXS.T.hg38 C3N-00440 CCRCC WXS tumor CPT0379590007 2fd4e91c-35f9-4493-b4e7-03a44047d1a1_wxs_gdc_realn.bam 31012916639 BAM harmonized CPTAC3 2c44d632-8d2f-43d2-a41d-8ed9855a653e fa2b75fb2579e617a01414d8bd15cb2b {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor"} -C3N-00466.MethArray.Green.Tpb C3N-00466 AML Methylation_Array tumor_peripheral_blood CPT0023040001 202163550007_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 09a50e23-bcc0-44d9-9e0d-d2afd4d79579 6fc362d9e30485c59d31878d21a48bf1 {"aliquot_tag": "ALQ_e98dd47b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.MethArray.Red.Tpb C3N-00466 AML Methylation_Array tumor_peripheral_blood CPT0023040001 202163550007_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 490313e4-9601-464d-a661-0fa284fbf898 d6c7b1bd85e93c49a3e25ea5a1829bc8 {"aliquot_tag": "ALQ_e98dd47b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.RNA-Seq.chimeric.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.chimeric.gdc_realn.bam 66682033 BAM chimeric harmonized CPTAC3 0fc18851-6427-4b2c-9f47-345cf8ecc030 648fcf964b5d29efc72bdf799c99c972 {"aliquot_tag": "ALQ_5bad086b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.RNA-Seq.genomic.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.genomic.gdc_realn.bam 6521149522 BAM genomic harmonized CPTAC3 306e901b-7acc-42c1-9b8b-3fb097269955 566a4c14157aabc1e1b3c95cb9a9b797 {"aliquot_tag": "ALQ_5bad086b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.RNA-Seq.S6_L002_R1.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R1_001.fastq.gz 2816749437 FASTQ S6_L002_R1 unaligned CPTAC3 b69f393c-3bf9-4132-b5c1-238fc1859cb9 385e0df921737e91d3108a3ccf9ee83c {"aliquot_tag": "ALQ_5bad086b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.RNA-Seq.S6_L002_R2.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R2_001.fastq.gz 3034415884 FASTQ S6_L002_R2 unaligned CPTAC3 5b6f2efe-8d73-4761-8059-bc09af777a4f 8f9d5e508edce6bcf93f7ab7897e23e2 {"aliquot_tag": "ALQ_5bad086b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.RNA-Seq.transcriptome.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.transcriptome.gdc_realn.bam 6404588979 BAM transcriptome harmonized CPTAC3 86b52422-68d7-4796-841d-1d78fa1bfdac 1197ce93c9ab6427f3ad79e9a02f7b49 {"aliquot_tag": "ALQ_5bad086b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.WGS.Nbc C3N-00466 AML WGS buccal_normal CPT0023130002 CPT0023130002.WholeGenome.RP-1303.bam 74044344782 BAM aligned CPTAC3 0cfd2d71-7b69-458b-97a3-4ae8d52ced75 67ac0b37bd94be4cfb68b815d482bba2 {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00466.WGS.Nbc.hg38 C3N-00466 AML WGS buccal_normal CPT0023130002 bd331a7b-50b2-4809-b754-ccd11174469b_gdc_realn.bam 117507605338 BAM harmonized CPTAC3 08d94116-dda1-410e-96e6-736a0455df56 3db9fe230d13551f79f5e70a2b8096ce {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00466.WGS.Tpb C3N-00466 AML WGS tumor_peripheral_blood CPT0023020001 CPT0023020001.WholeGenome.RP-1303.bam 82871237582 BAM aligned CPTAC3 fb1f6098-5e12-4723-b880-3ebc5be8dbd6 d3cb74a1380431a6fdff1d6822170e97 {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.WGS.Tpb.hg38 C3N-00466 AML WGS tumor_peripheral_blood CPT0023020001 edc4e890-f630-44f0-9123-7b7c9ae67ad0_gdc_realn.bam 123868552136 BAM harmonized CPTAC3 36e006d3-5445-4d59-ac64-f4fb3512656e 4884619455c8ca063b364930e8afc5b9 {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.WXS.Nbc C3N-00466 AML WXS buccal_normal CPT0023130002 CPT0023130002.WholeExome.RP-1303.bam 31161035888 BAM aligned CPTAC3 1c288c5e-809c-428d-89a5-a5c915af1f3d fed86b36b8c7303be1409dee41ddff4d {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00466.WXS.Nbc.hg38 C3N-00466 AML WXS buccal_normal CPT0023130002 bd331a7b-50b2-4809-b754-ccd11174469b_gdc_realn.bam 42851181309 BAM harmonized CPTAC3 59f07b0c-05bb-4ac1-9e1c-1f4f7751620d d7673c24bf0dc4e8ad311585f74b5c67 {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00466.WXS.Tpb C3N-00466 AML WXS tumor_peripheral_blood CPT0023020001 CPT0023020001.WholeExome.RP-1303.bam 28909426992 BAM aligned CPTAC3 06a0238f-4619-4b10-9075-18ab9797006d f6486e5e6d0fb0482c2566a8b285524a {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00466.WXS.Tpb.hg38 C3N-00466 AML WXS tumor_peripheral_blood CPT0023020001 edc4e890-f630-44f0-9123-7b7c9ae67ad0_gdc_realn.bam 39956842147 BAM harmonized CPTAC3 02f8d03c-1ec4-4a2a-a3fe-4582d19c7b5a 68a9e3996b026d7fa6371ad71f6c47b0 {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood"} -C3N-00491.MethArray.Green.A C3N-00491 CCRCC Methylation_Array tissue_normal CPT0012640009 204930630084_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 382a37df-1ea4-4830-9872-861fb10a88fd 76b387b10821a9a0597f85ee24dfcbee {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.MethArray.Green.T C3N-00491 CCRCC Methylation_Array tumor CPT0012670006 202184990052_R01C01_Grn.idat 13676228 IDAT Green NA CPTAC3 55200eec-94a7-4831-9a44-8c9b7ba84213 ab20537c4c7c4ca1914f82004153ce93 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor"} -C3N-00491.MethArray.Red.A C3N-00491 CCRCC Methylation_Array tissue_normal CPT0012640009 204930630084_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 0c2f5940-a440-4d2d-aed7-4b8e2aa0b635 962244dbfc76ed67ca3bc7f3998547c9 {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.MethArray.Red.T C3N-00491 CCRCC Methylation_Array tumor CPT0012670006 202184990052_R01C01_Red.idat 13676228 IDAT Red NA CPTAC3 d4723e5b-e407-4a2b-b0cd-f74f8b64ee9a 6b4f49e7644113a96cfd742947d70484 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor"} -C3N-00491.miRNA-Seq.A.hg38 C3N-00491 CCRCC miRNA-Seq tissue_normal CPT0012640006 29287986-403f-48e8-89fe-e65991fa9727_mirnaseq_gdc_realn.bam 277959678 BAM harmonized CPTAC3 e5d9fe70-6a7b-41d1-b428-015896536dbd 0d32df45edf2fa92a3b9c94b5aa2ed65 {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.miRNA-Seq.S24_L001_R1.T C3N-00491 CCRCC miRNA-Seq tumor CPT0012670009 181113_UNC31-K00269_0164_AH23NNBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 196970792 BAM S24_L001_R1 unaligned CPTAC3 e71cb4a3-be64-4c00-9f43-b9338edc5dee 4c8ab079d55f9f3e6d7da2ccfcc8315b {"aliquot_tag": "ALQ_5e57c9d3", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00491.miRNA-Seq.S37_L004_R1.A C3N-00491 CCRCC miRNA-Seq tissue_normal CPT0012640006 181108_UNC31-K00269_0163_BH23TVBBXY_CGGAAT_S37_L004_R1_001.unaln.bam 252738899 BAM S37_L004_R1 unaligned CPTAC3 483dcbcc-0f59-4469-a71f-366db18303d4 b4dda46280a89017e95c413b50f7e6e5 {"aliquot_tag": "ALQ_8948ae92", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.miRNA-Seq.T.hg38 C3N-00491 CCRCC miRNA-Seq tumor CPT0012670009 130547b7-0c74-42ca-b572-b374621717ac_mirnaseq_gdc_realn.bam 216226801 BAM harmonized CPTAC3 52de5fa5-2011-425e-bc30-58f1a0d58acb 86bcc609652a65773d8da4110581f1d9 {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor"} -C3N-00491.RNA-Seq.chimeric.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.chimeric.gdc_realn.bam 65114385 BAM chimeric harmonized CPTAC3 f1a77706-eb69-43c4-acde-c31128d8021a af11b13c23d7e30c5fc06d2f0655c0cd {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.RNA-Seq.chimeric.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.chimeric.gdc_realn.bam 62198299 BAM chimeric harmonized CPTAC3 249c2682-a629-4d37-aba7-ac8cb0f58315 aa5baeee5ccfe39ed45d64512509b6f6 {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor"} -C3N-00491.RNA-Seq.genomic.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.genomic.gdc_realn.bam 7911475016 BAM genomic harmonized CPTAC3 e63c2021-4fd9-45db-8952-51cc6c9972f7 fe2e49ae09038be7b4a5d6aeedb24fed {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.RNA-Seq.genomic.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.genomic.gdc_realn.bam 6728746914 BAM genomic harmonized CPTAC3 ad314b59-8218-49e6-a43b-cd114cee466f ca7c13a941d0a26f082173e8f8163a49 {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor"} -C3N-00491.RNA-Seq.S21_L006_R1.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3192212258 FASTQ S21_L006_R1 unaligned CPTAC3 2f6994ee-d320-4923-af43-167c5670d988 eb42612b85609c0e29b457401d6695d1 {"aliquot_tag": "ALQ_5e57c9d3", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00491.RNA-Seq.S21_L006_R2.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3433672047 FASTQ S21_L006_R2 unaligned CPTAC3 2b86d9b0-c43d-4089-b72d-bc374d152fd0 2de29d94e0b734ac206d4d1db857baf2 {"aliquot_tag": "ALQ_5e57c9d3", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00491.RNA-Seq.S49_L005_R1.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R1_001.fastq.gz 3666714942 FASTQ S49_L005_R1 unaligned CPTAC3 b4814c36-6e4b-45f5-91fa-79b5ec41ae42 7ea6ce693a7e26a1359392a5e16eb97b {"aliquot_tag": "ALQ_8948ae92", "sample": "S49", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.RNA-Seq.S49_L005_R2.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R2_001.fastq.gz 3846780589 FASTQ S49_L005_R2 unaligned CPTAC3 07455c3f-d477-4c70-9b4b-00a44c06f8a3 439b1bcdc9490fd8f5931962ef50a2a3 {"aliquot_tag": "ALQ_8948ae92", "sample": "S49", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.RNA-Seq.transcriptome.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.transcriptome.gdc_realn.bam 8406356687 BAM transcriptome harmonized CPTAC3 df947cdd-c5b6-4db0-b7be-983b2a6e6724 80b43a718f198362ef0524bad7debe2c {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.RNA-Seq.transcriptome.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.transcriptome.gdc_realn.bam 8698786303 BAM transcriptome harmonized CPTAC3 be3a2b8a-7fd6-43d3-b6fa-96c951362c21 7e9304f37e5861dc9ce0cbb50a3ebfba {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor"} -C3N-00491.WGS.A C3N-00491 CCRCC WGS tissue_normal CPT0012640009 CPT0012640009.WholeGenome.RP-1303.bam 55624299568 BAM aligned CPTAC3 a21dffb0-0bde-4340-bd51-8d0359631aae f2b28e40f164f4a9911bbf66acf2dfc0 {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.WGS.A.hg38 C3N-00491 CCRCC WGS tissue_normal CPT0012640009 a1494126-f9eb-4f5a-8306-ab4ab98aae2f_wgs_gdc_realn.bam 80821524405 BAM harmonized CPTAC3 e0179142-8ff3-402c-8e8c-440caed23572 6179c6431d66f8398e1463e15fdfb33c {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.WGS.N C3N-00491 CCRCC WGS blood_normal CPT0012730002 CPT0012730002.WholeGenome.RP-1303.bam 75848425895 BAM aligned CPTAC3 b32b656d-9c91-45e7-9541-06609ad9ad78 78735bc257f3d51aecfdf7f58634425d {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00491.WGS.N.hg38 C3N-00491 CCRCC WGS blood_normal CPT0012730002 b62b82e1-469c-44c3-a9b5-e52c05d760e9_gdc_realn.bam 110100903302 BAM harmonized CPTAC3 cffe7716-affb-4c8f-a188-9d741c81a0ad 164f3ab66d0e0960547c321ce41ab505 {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00491.WGS.T C3N-00491 CCRCC WGS tumor CPT0012670006 CPT0012670006.WholeGenome.RP-1303.bam 63631809941 BAM aligned CPTAC3 6cd3b6aa-86ab-411d-8248-ac3fd4835fd1 a4654715c16daee855724ae794aabd54 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor"} -C3N-00491.WGS.T.hg38 C3N-00491 CCRCC WGS tumor CPT0012670006 659ab3b8-28e2-4b3a-9659-41ad4fcc8aa0_gdc_realn.bam 94213885708 BAM harmonized CPTAC3 b1ce6372-51c8-4a7b-9591-5b5a9a38b837 eb195d9a4bd5d62dbafdc31d7058cd91 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor"} -C3N-00491.WXS.A C3N-00491 CCRCC WXS tissue_normal CPT0012640009 CPT0012640009.WholeExome.RP-1303.bam 47901462544 BAM aligned CPTAC3 a176f4f2-37c8-47f6-8f02-f19f7eefc905 983b6d1a51004a63cde1ad3a802c410d {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.WXS.A.hg38 C3N-00491 CCRCC WXS tissue_normal CPT0012640009 a1494126-f9eb-4f5a-8306-ab4ab98aae2f_wxs_gdc_realn.bam 64758553920 BAM harmonized CPTAC3 524c60ed-dab7-4e3f-a205-340ce62fabe6 e5b847f0f2f1ac9b5afec0f4d41a8c42 {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00491.WXS.N C3N-00491 CCRCC WXS blood_normal CPT0012730002 CPT0012730002.WholeExome.RP-1303.bam 43605667303 BAM aligned CPTAC3 48094c72-1f16-404d-b0d6-c7bc005b09c6 a5a6b5f9f2b459aca7db6291aadf0704 {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00491.WXS.N.hg38 C3N-00491 CCRCC WXS blood_normal CPT0012730002 b62b82e1-469c-44c3-a9b5-e52c05d760e9_gdc_realn.bam 58306096719 BAM harmonized CPTAC3 7392d32c-52df-4dd6-a9d0-e6484e76e636 57a2316292df576ea79336aeb1f35a96 {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00491.WXS.T C3N-00491 CCRCC WXS tumor CPT0012670006 CPT0012670006.WholeExome.RP-1303.bam 21741493668 BAM aligned CPTAC3 0f2e7f06-4893-46e2-a854-d132d1e001c9 cd7de089ab20154c80fd91217fbdd50a {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor"} -C3N-00491.WXS.T.hg38 C3N-00491 CCRCC WXS tumor CPT0012670006 659ab3b8-28e2-4b3a-9659-41ad4fcc8aa0_gdc_realn.bam 29866584865 BAM harmonized CPTAC3 f0699b2a-8bda-49dc-8796-9c84f81672c6 59b877291bc9a6d7abd2dcb7a7774a51 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor"} -C3N-00492.MethArray.Green.A C3N-00492 CCRCC Methylation_Array tissue_normal CPT0012770009 204930640061_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dd94c993-d24a-4566-a9c2-c6d890e5eceb ef5c7466c1d22572dc81acf0ad5423df {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00492.MethArray.Green.T C3N-00492 CCRCC Methylation_Array tumor CPT0079180009 202176290105_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4007f916-eb4d-413c-9ebb-aedc942f2c0f f7aac6225e01ea2762d9ed8457d660e6 {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor"} -C3N-00492.MethArray.Red.A C3N-00492 CCRCC Methylation_Array tissue_normal CPT0012770009 204930640061_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 b6d210da-34d8-407c-9695-54f10f655e44 d1ebffb840cc032f8b8a599eb5064405 {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00492.MethArray.Red.T C3N-00492 CCRCC Methylation_Array tumor CPT0079180009 202176290105_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 0a025737-b7d9-4c17-8637-94665f068ab6 31c4c20132bf755173ce6b3875158901 {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor"} -C3N-00492.miRNA-Seq.S25_L005_R1.T C3N-00492 CCRCC miRNA-Seq tumor CPT0079180006 181119_UNC31-K00269_0165_AH27WCBBXY_ATCACG_S25_L005_R1_001.unaln.bam 173335269 BAM S25_L005_R1 unaligned CPTAC3 9a2d4bdb-1af8-4c2f-86aa-863eaa44354b f2f1a8d2d4e524c0b5c2d2001b56a752 {"aliquot_tag": "ALQ_95d52e56", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00492.miRNA-Seq.T.hg38 C3N-00492 CCRCC miRNA-Seq tumor CPT0079180006 3d777583-ff48-4f8a-9192-29a0408fd077_mirnaseq_gdc_realn.bam 193627985 BAM harmonized CPTAC3 5591bbbb-474a-4f97-bbb8-f9546fe8ae9a d44872254378c91f5c34993739ea11d7 {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor"} -C3N-00492.RNA-Seq.chimeric.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.chimeric.gdc_realn.bam 175913498 BAM chimeric harmonized CPTAC3 bcfbec0e-29ea-48f6-b5f3-eb147ec7a0f4 879af74b0034f0c580125c5a2bd61935 {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor"} -C3N-00492.RNA-Seq.genomic.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.genomic.gdc_realn.bam 8534592348 BAM genomic harmonized CPTAC3 5af8c7da-6220-4abe-b76d-a7e3daf4d764 ae736a51de9df3f21a7c22c323c90ffa {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor"} -C3N-00492.RNA-Seq.S10_L003_R1.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4287253516 FASTQ S10_L003_R1 unaligned CPTAC3 24b6cd17-b856-4ca8-8ff1-ee1fa9c70e2b 7f80f213489a3b0db53f41f5181bd20c {"aliquot_tag": "ALQ_95d52e56", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00492.RNA-Seq.S10_L003_R2.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4547476920 FASTQ S10_L003_R2 unaligned CPTAC3 5ac1e5d2-0e4e-4e8e-9d94-fe318ed2a013 7efd7a53c2a94306d56cbfa7a1b2a73e {"aliquot_tag": "ALQ_95d52e56", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00492.RNA-Seq.transcriptome.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.transcriptome.gdc_realn.bam 8177176440 BAM transcriptome harmonized CPTAC3 2ce2a57a-ddc7-4863-800c-f949fbb0feac 969341c8230240fc423f5c8b3bf92380 {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor"} -C3N-00492.WGS.A C3N-00492 CCRCC WGS tissue_normal CPT0012770009 CPT0012770009.WholeGenome.RP-1303.bam 59815465023 BAM aligned CPTAC3 a6a6f262-9a7f-4468-8b39-5f87b8579fad de1a256b4a4d99b4dcfcedf24b9e4e26 {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00492.WGS.A.hg38 C3N-00492 CCRCC WGS tissue_normal CPT0012770009 e2708c50-3927-412a-8769-c4ffd79a61bd_wgs_gdc_realn.bam 88466707880 BAM harmonized CPTAC3 29ea796b-0f9f-4dca-bf64-ab8358880f5e 74a2246c24794fa7a126e7a51a468db6 {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00492.WGS.N C3N-00492 CCRCC WGS blood_normal CPT0012820002 CPT0012820002.WholeGenome.RP-1303.bam 80673423695 BAM aligned CPTAC3 e96fde6d-fefe-44ae-9c42-e23798bcdc9d 9a325e398f18547509db52bf5da1032a {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00492.WGS.N.hg38 C3N-00492 CCRCC WGS blood_normal CPT0012820002 95f87da0-10c3-4119-ac35-19997d6e4bc8_gdc_realn.bam 120098380036 BAM harmonized CPTAC3 1138765a-0142-4bb8-96fb-4cc238c57ce3 596dc6e1441de5d86172605982b44a0f {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00492.WGS.T C3N-00492 CCRCC WGS tumor CPT0079180009 CPT0079180009.WholeGenome.RP-1303.bam 72945816861 BAM aligned CPTAC3 f93cf5d9-cdf3-4e1b-a029-8a9c67cb1d89 2f536a11b386f37fe2d7921e24ab671f {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor"} -C3N-00492.WGS.T.hg38 C3N-00492 CCRCC WGS tumor CPT0079180009 3c066ad7-5abe-4f2f-a975-8bc9f84e6e62_gdc_realn.bam 108607108245 BAM harmonized CPTAC3 34300b0a-29b9-4ef8-a3c7-6a222fcc360b 091b5b8e5d36a4806a36ecd7eb8171dd {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor"} -C3N-00492.WXS.A C3N-00492 CCRCC WXS tissue_normal CPT0012770009 CPT0012770009.WholeExome.RP-1303.bam 33247707203 BAM aligned CPTAC3 51579c01-162a-4b65-8ddf-cbc316697d2c 3fdcae23d4d0c1d57bc5f5b49f97014b {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00492.WXS.A.hg38 C3N-00492 CCRCC WXS tissue_normal CPT0012770009 e2708c50-3927-412a-8769-c4ffd79a61bd_wxs_gdc_realn.bam 44820933127 BAM harmonized CPTAC3 c9aefecc-62a2-4acc-9ed6-410ed62ecba9 7939b47e3b8af5171f232804a02574cd {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00492.WXS.N C3N-00492 CCRCC WXS blood_normal CPT0012820002 CPT0012820002.WholeExome.RP-1303.bam 31121662603 BAM aligned CPTAC3 85fc7c82-3827-489e-869f-89ad83c9a93d 4344c8a4bc327831f841b33401460c6a {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00492.WXS.N.hg38 C3N-00492 CCRCC WXS blood_normal CPT0012820002 95f87da0-10c3-4119-ac35-19997d6e4bc8_gdc_realn.bam 42289863592 BAM harmonized CPTAC3 9cf80f38-78a2-4635-a5bb-47785d7d5d08 e8d1797f63f631385d9f148f10f299da {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00492.WXS.T C3N-00492 CCRCC WXS tumor CPT0079180009 CPT0079180009.WholeExome.RP-1303.bam 29339564987 BAM aligned CPTAC3 8584f389-6a40-48a6-a5e6-313ef8296045 a93d0925880259442e86acfd5bdcc2fe {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor"} -C3N-00492.WXS.T.hg38 C3N-00492 CCRCC WXS tumor CPT0079180009 3c066ad7-5abe-4f2f-a975-8bc9f84e6e62_gdc_realn.bam 39921976347 BAM harmonized CPTAC3 addcc625-919f-4b3b-927f-9fc0366a48f7 007bcdc33a406d059b9ac30ec7e17b90 {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_20418ea6.miRNA-Seq.S33_L002_R1.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012910009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGGCC_S33_L002_R1_001.unaln.bam 171116157 BAM S33_L002_R1 unaligned CPTAC3 71ff2f17-12b4-4f53-9252-11f846acc22e 3142bc71e9371eaebcdc9f033d119bea {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_20418ea6.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012910009 40e674e5-a06b-46f9-b604-e0145b171886_mirnaseq_gdc_realn.bam 194708761 BAM harmonized CPTAC3 3a1c57f7-1139-461a-8215-79a7f9c57597 7d391115e28087997040132ab06ad08e {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_20418ea6.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.chimeric.gdc_realn.bam 48040467 BAM chimeric harmonized CPTAC3 933c58a8-0119-4ba4-bdd6-f6970257bd77 11fc2b40a4e1f375fa0531e9cefd2702 {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_20418ea6.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.genomic.gdc_realn.bam 6612786504 BAM genomic harmonized CPTAC3 11999036-a4c5-4e4c-b627-48a7c70ef660 82c2dab49c18a22128a936dc7206f5cd {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_20418ea6.RNA-Seq.S14_L004_R1.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3125681078 FASTQ S14_L004_R1 unaligned CPTAC3 d7c57fa6-a2da-435f-9c9e-090ea4ece298 82005b205dbf6b34e4cfa90389663b4a {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_20418ea6.RNA-Seq.S14_L004_R2.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3613516467 FASTQ S14_L004_R2 unaligned CPTAC3 a51962b2-2228-4455-bcf6-57d6d4479067 73463c1eccebdf03f84af4280ec55873 {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_20418ea6.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.transcriptome.gdc_realn.bam 7169763181 BAM transcriptome harmonized CPTAC3 5f379e16-00e3-47f8-a0f2-745816c76796 9e0db79621aebc2c17da131844a5d916 {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_76b222e3.MethArray.Green.T C3N-00494 CCRCC Methylation_Array tumor CPT0012880006 204367490048_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1b16f23e-06d2-4606-b7d8-2ddef7a80d55 92d368262662657aecc174226e8f1e9f {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_76b222e3.MethArray.Red.T C3N-00494 CCRCC Methylation_Array tumor CPT0012880006 204367490048_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 3ebf84e4-729c-44de-88bb-94ec9d1202d3 fe47c31c5f2e05f77cb053ce6261abe6 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_76b222e3.WGS.T C3N-00494 CCRCC WGS tumor CPT0012880006 CPT0012880006.WholeGenome.RP-2158.bam 23565585031 BAM aligned CPTAC3 69b5f22a-49e3-46ca-b877-d2925aa5fe71 bf57da01eb76139249a141c3e9372ed5 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_76b222e3.WGS.T.hg38 C3N-00494 CCRCC WGS tumor CPT0012880006 3b5ef18d-9e91-4f54-aaae-724836ca0327_wgs_gdc_realn.bam 67146860374 BAM harmonized CPTAC3 e2b8994e-a1f1-4afa-8133-3b8bfd911a68 3d9506bfd88579b76afbb6deb9086a87 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_76b222e3.WXS.T C3N-00494 CCRCC WXS tumor CPT0012880006 CPT0012880006.WholeExome.RP-1303.bam 22127827129 BAM aligned CPTAC3 9a9b9068-4c38-45e3-82e4-423b4b7c8fbd a55249d0385b3f3b52b5b6b147be6c89 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_76b222e3.WXS.T.hg38 C3N-00494 CCRCC WXS tumor CPT0012880006 3b5ef18d-9e91-4f54-aaae-724836ca0327_wxs_gdc_realn.bam 30470072937 BAM harmonized CPTAC3 4160b4a2-ba65-428c-bdc3-574aa3a0b4b8 e897c3d8d5e076b28eab2bca33744062 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_b0fe9337.MethArray.Green.T C3N-00494 CCRCC Methylation_Array tumor CPT0012910006 204372030106_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7307db34-81e3-4ccd-a0d3-27b8cc58f3e5 a995a4a0cfe9bf0a738089fb64c1afdd {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_b0fe9337.MethArray.Red.T C3N-00494 CCRCC Methylation_Array tumor CPT0012910006 204372030106_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 0c166bf5-e29c-407d-bfcd-c7b8c39ac0bc b22ec11da983715e8ac7465e99dd5956 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_b0fe9337.WGS.T C3N-00494 CCRCC WGS tumor CPT0012910006 CPT0012910006.WholeGenome.RP-2158.bam 20169104164 BAM aligned CPTAC3 f565d2c9-995c-4e68-836c-1e46969f0e42 f53ff78f53c35c18316a63755f89e826 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_b0fe9337.WGS.T.hg38 C3N-00494 CCRCC WGS tumor CPT0012910006 4b79b8a6-8476-41b1-a6c7-92304a41007e_wgs_gdc_realn.bam 58720539122 BAM harmonized CPTAC3 58e39f53-bcd9-497d-9273-fed8dfb70630 1563d7f9b973b83ab43d5f3f1a1944e0 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_b0fe9337.WXS.T C3N-00494 CCRCC WXS tumor CPT0012910006 CPT0012910006.WholeExome.RP-1303.bam 21688955169 BAM aligned CPTAC3 2db36a86-7dd5-4423-9b1a-d8e2f05d8967 c1b5e21dfb30a8ff20ca55bfbc0aced0 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_b0fe9337.WXS.T.hg38 C3N-00494 CCRCC WXS tumor CPT0012910006 4b79b8a6-8476-41b1-a6c7-92304a41007e_wxs_gdc_realn.bam 30037059138 BAM harmonized CPTAC3 48b9cc61-1a9d-49f0-a636-b829de86b8d5 f17feb2d5471856cf159eb4ffa7948f4 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_e60d3f72.miRNA-Seq.S32_L002_R1.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012880009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGAAA_S32_L002_R1_001.unaln.bam 250835777 BAM S32_L002_R1 unaligned CPTAC3 c0ccf61f-58af-4e0a-b1bf-cadfd690c248 6fe3e608bbe5f118b6e0bd8cd31e2bf6 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_e60d3f72.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012880009 bac2e0e6-2f4e-4710-8714-0563133ca726_mirnaseq_gdc_realn.bam 278452951 BAM harmonized CPTAC3 63674e1f-033b-40e7-8b36-8cc02e29b070 ec62422d2402bb2b6711bf8ca1444329 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_e60d3f72.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.chimeric.gdc_realn.bam 62102027 BAM chimeric harmonized CPTAC3 0ec8c364-ae36-45ca-ae79-87b83c1d158e b6906302fe8254decf2229c0e44f458e {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_e60d3f72.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.genomic.gdc_realn.bam 8948795833 BAM genomic harmonized CPTAC3 1bd54066-e5f6-4e44-9abe-9eed89cbbe5d ca9a97932f31b7a77312124d0e1ae0ed {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_e60d3f72.RNA-Seq.S16_L004_R1.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4468034938 FASTQ S16_L004_R1 unaligned CPTAC3 1bdb8c8b-dac9-44d8-9e24-c03902cb6052 10c68565be91bc657177e5223fa02f5c {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_e60d3f72.RNA-Seq.S16_L004_R2.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 5042833136 FASTQ S16_L004_R2 unaligned CPTAC3 5ac4146a-1572-4b59-8388-c503f6beb946 79597706c38f3b7b15bd36ff1dcf9ad6 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00494.DUP_e60d3f72.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.transcriptome.gdc_realn.bam 13221551231 BAM transcriptome harmonized CPTAC3 b07eea9a-79e4-4e24-9dfc-e797ec648dee 7586028952db259a8cb0008a0e9904a7 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00494.MethArray.Green.A C3N-00494 CCRCC Methylation_Array tissue_normal CPT0012920009 204930630086_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 eef6b415-6bcc-4ddc-bd07-b5c026eb5793 db885830f60c6bcf880a19c99a808b35 {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.MethArray.Green.T C3N-00494 CCRCC Methylation_Array tumor CPT0012900010 202178770045_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 308bc5ea-6415-4670-a10c-3a68ddac1ab9 3c187bfb472beab973578217ffde1cf2 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor"} -C3N-00494.MethArray.Red.A C3N-00494 CCRCC Methylation_Array tissue_normal CPT0012920009 204930630086_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 17e7efe8-2ead-4635-b000-e8c92948c168 cdeebdb47190c719dce72ebbcf6a7e1c {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.MethArray.Red.T C3N-00494 CCRCC Methylation_Array tumor CPT0012900010 202178770045_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 3156833e-f69c-4e2f-b763-32aac3911075 bbf60f633f63be5b1cda004685e035bb {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor"} -C3N-00494.miRNA-Seq.A.hg38 C3N-00494 CCRCC miRNA-Seq tissue_normal CPT0012920013 37b95732-7fab-4d4c-852f-1d430d2acdb6_mirnaseq_gdc_realn.bam 258565508 BAM harmonized CPTAC3 2cee4075-5ca9-4745-85b8-f79f9519cb64 54c11bb1b460504fb23dbd0a8310ccb9 {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.miRNA-Seq.S15_L006_R1.A C3N-00494 CCRCC miRNA-Seq tissue_normal CPT0012920013 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L006_R1_001.unaln.bam 236623166 BAM S15_L006_R1 unaligned CPTAC3 b6519109-bd4e-4b8e-9505-4cbd8322dfb4 5284bf6e96f79cff1233fef706af76c2 {"aliquot_tag": "ALQ_9e2f2c29", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.miRNA-Seq.S8_L005_R1.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012900007 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L005_R1_001.unaln.bam 236256164 BAM S8_L005_R1 unaligned CPTAC3 64dc1096-8283-4834-a357-6af676f6f3f6 050ded186305b74649aa880ec732f94c {"aliquot_tag": "ALQ_fa998a11", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00494.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012900007 313bd6bb-d242-4f5e-83d2-fc33e941df98_mirnaseq_gdc_realn.bam 267919198 BAM harmonized CPTAC3 dcd1547c-aa1d-4b2a-8dbf-92d01620b514 31b741f4481b1d1eb8fe1d3583021408 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor"} -C3N-00494.RNA-Seq.chimeric.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.chimeric.gdc_realn.bam 140096324 BAM chimeric harmonized CPTAC3 738ad0af-574b-4f88-ad25-0c5dd36ca9fe a77c2ea71a303e7fb83d6afd03843111 {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.chimeric.gdc_realn.bam 66625420 BAM chimeric harmonized CPTAC3 a1079751-90b1-4f60-9409-8cc9553b706e 0f6b033aa39cef610e83a5b7cca0cf22 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor"} -C3N-00494.RNA-Seq.genomic.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.genomic.gdc_realn.bam 8260514294 BAM genomic harmonized CPTAC3 40accf62-5db7-41ca-a5cd-3c5e84547a01 e8d7e81ae1f81665a34afd020eb34057 {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.genomic.gdc_realn.bam 7017890475 BAM genomic harmonized CPTAC3 e5e39516-4596-41ab-93a6-5a4584ff5e7b c17b2a0796bdba6362e680f9904a3964 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor"} -C3N-00494.RNA-Seq.S18_L005_R1.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3444661736 FASTQ S18_L005_R1 unaligned CPTAC3 6f33effb-eaec-4176-a032-7e7c017b66b6 d9f27f942a17e2ccd422af1e8735454f {"aliquot_tag": "ALQ_fa998a11", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00494.RNA-Seq.S18_L005_R2.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3573204620 FASTQ S18_L005_R2 unaligned CPTAC3 9571a8f2-e58e-437d-930c-2c5c9073576e 65e538b435b95e246b37ecae0d5dc8b3 {"aliquot_tag": "ALQ_fa998a11", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00494.RNA-Seq.S43_L008_R1.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R1_001.fastq.gz 3429082012 FASTQ S43_L008_R1 unaligned CPTAC3 4206da2c-7976-4fe3-b4c0-84fd2c9e3b69 16c2f5859c86ab8bd0353218cd8f7d18 {"aliquot_tag": "ALQ_9e2f2c29", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.RNA-Seq.S43_L008_R2.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R2_001.fastq.gz 3743408251 FASTQ S43_L008_R2 unaligned CPTAC3 eee3dfdf-79e9-48ce-aaca-f047ef10c13b f57cf44785d34c73392011bece291365 {"aliquot_tag": "ALQ_9e2f2c29", "sample": "S43", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.RNA-Seq.transcriptome.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.transcriptome.gdc_realn.bam 7016355602 BAM transcriptome harmonized CPTAC3 5605098e-cde3-44bd-a3c4-a280fd724eb1 68fa068a620106293d3002cd58e8f1bc {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.transcriptome.gdc_realn.bam 9001409742 BAM transcriptome harmonized CPTAC3 a2e6ae1d-a1b9-4396-91bf-05495d2ac94e d3b9f1a209ae329daa5a5cc6ecbebb30 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor"} -C3N-00494.WGS.A C3N-00494 CCRCC WGS tissue_normal CPT0012920009 CPT0012920009.WholeGenome.RP-1303.bam 60573651552 BAM aligned CPTAC3 ee03ffb6-dfac-4d98-b863-9e1f256bcb74 b2b919fd1d865749df52d0047e6e95e9 {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.WGS.A.hg38 C3N-00494 CCRCC WGS tissue_normal CPT0012920009 f2cba9d9-e207-403e-9503-3866a6d4d880_wgs_gdc_realn.bam 87765061732 BAM harmonized CPTAC3 29b8d526-1d8a-45ff-a5c7-7b482540c7a5 e706bb2b6aaa044b391cd767955f08ce {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.WGS.N C3N-00494 CCRCC WGS blood_normal CPT0012980002 CPT0012980002.WholeGenome.RP-1303.bam 64327620891 BAM aligned CPTAC3 72227727-5ab1-49c2-b22d-7f798852fbe8 0eb0d794ed8453c50630b4c5b823651e {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00494.WGS.N.hg38 C3N-00494 CCRCC WGS blood_normal CPT0012980002 77c492cd-10e7-45f0-a55d-68b7ca8101ff_gdc_realn.bam 91489182503 BAM harmonized CPTAC3 23a6d334-3f9a-475c-acbb-4d51cd20f548 d7919566fcd07b3cc1b876bd141b2718 {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00494.WGS.T C3N-00494 CCRCC WGS tumor CPT0012900010 CPT0012900010.WholeGenome.RP-1303.bam 56917184216 BAM aligned CPTAC3 784a5a91-9528-42c3-9d91-809b0f8d333e d42eff67385856dc825f776f3d4ab075 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor"} -C3N-00494.WGS.T.hg38 C3N-00494 CCRCC WGS tumor CPT0012900010 6f1a51d2-1199-4988-bb66-719b652cd7df_gdc_realn.bam 82268205613 BAM harmonized CPTAC3 80da7a63-2dfa-42ae-8fe5-5bea8c7435b5 0c05ab876f71ca5570733ebdf33c31b3 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor"} -C3N-00494.WXS.A C3N-00494 CCRCC WXS tissue_normal CPT0012920009 CPT0012920009.WholeExome.RP-1303.bam 29851599198 BAM aligned CPTAC3 e59eafaa-4627-4a52-afaf-87a4dcbc9947 748c128a2ef65b219b0e08a1677c169c {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.WXS.A.hg38 C3N-00494 CCRCC WXS tissue_normal CPT0012920009 f2cba9d9-e207-403e-9503-3866a6d4d880_wxs_gdc_realn.bam 40465910541 BAM harmonized CPTAC3 75d6b734-1ed0-4186-a436-5ed4d2b0605c 8dda5a099c0a1464d1c241a037acb80f {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00494.WXS.N C3N-00494 CCRCC WXS blood_normal CPT0012980002 CPT0012980002.WholeExome.RP-1303.bam 22910181033 BAM aligned CPTAC3 556501bb-8d4c-4ee8-bec3-247eba9332a9 2c770a3c71c597050899dd9c7b23897d {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00494.WXS.N.hg38 C3N-00494 CCRCC WXS blood_normal CPT0012980002 77c492cd-10e7-45f0-a55d-68b7ca8101ff_gdc_realn.bam 31153675734 BAM harmonized CPTAC3 b619cdc5-a036-42f3-8e92-276a81a52866 c7f58a02f4f3e24c5bbf6af19ec4a668 {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00494.WXS.T C3N-00494 CCRCC WXS tumor CPT0012900010 CPT0012900010.WholeExome.RP-1303.bam 26984326329 BAM aligned CPTAC3 19a381a0-b72f-4659-bdd0-aba4e89adf1c 3516d9122d89b21a72e77b056d2e42c9 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor"} -C3N-00494.WXS.T.hg38 C3N-00494 CCRCC WXS tumor CPT0012900010 6f1a51d2-1199-4988-bb66-719b652cd7df_gdc_realn.bam 36953774725 BAM harmonized CPTAC3 d13873ad-167d-40e3-b2e4-5a829a1810fc e7e48c54bb6425694d8b0586c3a7dafa {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor"} -C3N-00495.MethArray.Green.A C3N-00495 CCRCC Methylation_Array tissue_normal CPT0078530009 204930640064_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1e597357-051d-4d60-a7ba-6b488753bf77 a802261b41b9ab3a1011b92dfceeae55 {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.MethArray.Green.T C3N-00495 CCRCC Methylation_Array tumor CPT0078510009 202178770111_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f0c2d541-3eb2-4197-bfc9-d36b950dbd2d e778cecd43a54208a7cf6a4cd9643119 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor"} -C3N-00495.MethArray.Red.A C3N-00495 CCRCC Methylation_Array tissue_normal CPT0078530009 204930640064_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 bf247bca-36af-4579-a994-707eb5fb111f 8f27d48514ccf78d1bfc0c4350732e6a {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.MethArray.Red.T C3N-00495 CCRCC Methylation_Array tumor CPT0078510009 202178770111_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 52fefd7a-c3a7-4b33-bfa9-951fda3b13a9 10bf04d7d7883c0438e56bdda1626856 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor"} -C3N-00495.miRNA-Seq.A.hg38 C3N-00495 CCRCC miRNA-Seq tissue_normal CPT0078530006 85eec664-3b42-402a-bd58-e17b789ece36_mirnaseq_gdc_realn.bam 181210666 BAM harmonized CPTAC3 ab6ed3fb-758c-41d5-826d-e75e01f4b5f9 5b1a9b76e106158c45f702023da91bb4 {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.miRNA-Seq.S13_L008_R1.T C3N-00495 CCRCC miRNA-Seq tumor CPT0078510006 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L008_R1_001.unaln.bam 236074353 BAM S13_L008_R1 unaligned CPTAC3 543c733e-9191-4b8a-81a1-0054f11a8c95 331e188be19929f1b05db4b564dbbed5 {"aliquot_tag": "ALQ_a5230585", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00495.miRNA-Seq.S21_L003_R1.A C3N-00495 CCRCC miRNA-Seq tissue_normal CPT0078530006 181108_UNC31-K00269_0163_BH23TVBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 161315542 BAM S21_L003_R1 unaligned CPTAC3 b0fd4bb4-6a15-4f8f-8d5c-9f26cefdde07 205bb105cc716adf1063982717c650f0 {"aliquot_tag": "ALQ_dfe356e5", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.miRNA-Seq.T.hg38 C3N-00495 CCRCC miRNA-Seq tumor CPT0078510006 15a19df8-068b-4b46-b072-3bfa7b1ce309_mirnaseq_gdc_realn.bam 256508919 BAM harmonized CPTAC3 8c423516-5270-4bd6-8b28-066c45a6ee3d 60fb4e0431eacfb4159e6ca70ccf0b6e {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor"} -C3N-00495.RNA-Seq.chimeric.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.chimeric.gdc_realn.bam 70350335 BAM chimeric harmonized CPTAC3 c1709245-4e64-44bd-89c5-1f1af172035f 224b876f24f2a8602a284b9c2594ac07 {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.RNA-Seq.chimeric.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.chimeric.gdc_realn.bam 65034908 BAM chimeric harmonized CPTAC3 32d12f6c-ff9f-4f6c-a3ae-a5c85e310b6e 7260c0180ed9a58a43b5d77bc835c0a2 {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor"} -C3N-00495.RNA-Seq.genomic.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.genomic.gdc_realn.bam 8380069022 BAM genomic harmonized CPTAC3 a3030261-de4a-4cf2-8240-89513b414ade 91c0bf0ed347101cb6073e6c7481c031 {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.RNA-Seq.genomic.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.genomic.gdc_realn.bam 8431682893 BAM genomic harmonized CPTAC3 5f3cb28e-c63c-4682-a0b2-b61ac2227031 2c42f7b2909f895cda02ee34eecc78d9 {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor"} -C3N-00495.RNA-Seq.S15_L006_R1.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R1_001.fastq.gz 4319239976 FASTQ S15_L006_R1 unaligned CPTAC3 30d1940d-f271-4ba1-b30a-8eea0c8cfc0a e631b7b5d6972192cd881c8d0d4e56a1 {"aliquot_tag": "ALQ_a5230585", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00495.RNA-Seq.S15_L006_R2.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R2_001.fastq.gz 4611002202 FASTQ S15_L006_R2 unaligned CPTAC3 d8430241-6e92-4270-992c-69438cb7b217 06424933fd3f8f92755eee9643f6f647 {"aliquot_tag": "ALQ_a5230585", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00495.RNA-Seq.S8_L002_R1.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R1_001.fastq.gz 3991839423 FASTQ S8_L002_R1 unaligned CPTAC3 4738be16-7eb0-4fb4-99d8-238e271c6ba1 7b08a64627ed81c2b4c4df12a1ff29a5 {"aliquot_tag": "ALQ_dfe356e5", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.RNA-Seq.S8_L002_R2.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R2_001.fastq.gz 4419153111 FASTQ S8_L002_R2 unaligned CPTAC3 5c35e953-583d-4c81-bc60-2f95f4776e16 d9238e58ec0289cc203aa249c0f8fc1b {"aliquot_tag": "ALQ_dfe356e5", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.RNA-Seq.transcriptome.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.transcriptome.gdc_realn.bam 10262521940 BAM transcriptome harmonized CPTAC3 f6fe5b7b-054b-4f65-ad6b-abe2c06fea28 ff0c75d03b71886861d90583756f042b {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.RNA-Seq.transcriptome.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.transcriptome.gdc_realn.bam 13044034268 BAM transcriptome harmonized CPTAC3 c46a0749-9727-404e-9af9-9194779717ba edb1495b6c09f93668652e3fd331da5b {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor"} -C3N-00495.WGS.A C3N-00495 CCRCC WGS tissue_normal CPT0078530009 CPT0078530009.WholeGenome.RP-1303.bam 62418425790 BAM aligned CPTAC3 6674e95d-d26e-4716-b6a2-eae690d6d775 c97a085f493ba2bfe1685fb4acd6ea9d {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.WGS.A.hg38 C3N-00495 CCRCC WGS tissue_normal CPT0078530009 18845e06-84c7-4e8c-b77f-eb2dd229f458_wgs_gdc_realn.bam 90460686899 BAM harmonized CPTAC3 073a5b62-68ed-432d-a7d3-bb77e2534531 884ed291345b5a36202241107f0c672f {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.WGS.N C3N-00495 CCRCC WGS blood_normal CPT0078570002 CPT0078570002.WholeGenome.RP-1303.bam 63228186673 BAM aligned CPTAC3 7d161dd4-cf66-43be-8b40-4a0d0b001320 74817585918ff42a6e0b154c7e047405 {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00495.WGS.N.hg38 C3N-00495 CCRCC WGS blood_normal CPT0078570002 92a60f1e-d6d9-4eed-9b90-d50c151d0381_gdc_realn.bam 95423514621 BAM harmonized CPTAC3 61a39a45-33d3-49bb-b5fd-da1d6bd4fe0c 78b1477be87e10ebdacde91b9b72c753 {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00495.WGS.T C3N-00495 CCRCC WGS tumor CPT0078510009 CPT0078510009.WholeGenome.RP-1303.bam 67932764239 BAM aligned CPTAC3 a8666f01-90ef-4987-8191-ae6b2f781c02 772d0ac9f4801977b1cf25b99adf8f30 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor"} -C3N-00495.WGS.T.hg38 C3N-00495 CCRCC WGS tumor CPT0078510009 77acae83-6dc6-4efe-8c93-1008974b60d9_gdc_realn.bam 101508453801 BAM harmonized CPTAC3 675b3ccf-2515-4b66-a988-e2a2bf7dbc33 614aa1c017f66b6197b0f9afa7c49bf0 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor"} -C3N-00495.WXS.A C3N-00495 CCRCC WXS tissue_normal CPT0078530009 CPT0078530009.WholeExome.RP-1303.bam 38302995538 BAM aligned CPTAC3 2cf13aef-b404-4606-8106-ba5b88089bd0 39dcf5974b4daf22fdcd71f410ac6586 {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.WXS.A.hg38 C3N-00495 CCRCC WXS tissue_normal CPT0078530009 18845e06-84c7-4e8c-b77f-eb2dd229f458_wxs_gdc_realn.bam 51335790611 BAM harmonized CPTAC3 06fb9995-ba0a-4fa4-9e00-dad1f86e56b0 aa74ee32ef7a95babe6a461f4283acd9 {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00495.WXS.N C3N-00495 CCRCC WXS blood_normal CPT0078570002 CPT0078570002.WholeExome.RP-1303.bam 30145054078 BAM aligned CPTAC3 fdc4d251-af66-4841-9288-c437b96e3722 d5c3e7d431d4c50e0ab6aeb64fdd47b8 {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00495.WXS.N.hg38 C3N-00495 CCRCC WXS blood_normal CPT0078570002 92a60f1e-d6d9-4eed-9b90-d50c151d0381_gdc_realn.bam 40355055601 BAM harmonized CPTAC3 496e0740-e279-480d-81ab-9d9644ca4a38 3042c778debcc480f50d342c8beccc6e {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00495.WXS.T C3N-00495 CCRCC WXS tumor CPT0078510009 CPT0078510009.WholeExome.RP-1303.bam 37733398248 BAM aligned CPTAC3 44ad7b74-67df-49b5-8f7d-e0543ec34129 bfa3e7c5b2fb758e093155f5992d352f {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor"} -C3N-00495.WXS.T.hg38 C3N-00495 CCRCC WXS tumor CPT0078510009 77acae83-6dc6-4efe-8c93-1008974b60d9_gdc_realn.bam 50759379627 BAM harmonized CPTAC3 e1f00fb6-a3d8-4fa0-89c5-51391420efef 50465ad0d8935b7871bc62643b6f384b {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor"} -C3N-00496.MethArray.Green.A C3N-00496 CCRCC Methylation_Array tissue_normal CPT0379670010 205589740003_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 eafb0c74-27b6-469f-8100-1dfb8e0d47a0 44f3d877279c6337d2a46e5b771fd0f6 {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00496.MethArray.Green.T C3N-00496 CCRCC Methylation_Array tumor CPT0379630015 205549600082_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 db37f7d9-80da-4bfd-884b-73a2c80e389a 3768e05adf1545dcec9f0b89f077259b {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor"} -C3N-00496.MethArray.Red.A C3N-00496 CCRCC Methylation_Array tissue_normal CPT0379670010 205589740003_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 6726375b-de4c-4117-a778-f11e246767ed 2336a1baf97ec4520f2cb644aaf1bacb {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00496.MethArray.Red.T C3N-00496 CCRCC Methylation_Array tumor CPT0379630015 205549600082_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 6ca56177-963a-4f81-843c-d44054e4d2ee 1313177e25f3e1693036db5f6c1e86a1 {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor"} -C3N-00496.miRNA-Seq.S41_L003_R1.T C3N-00496 CCRCC miRNA-Seq tumor CPT0379630012 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATCACG_S41_L003_R1_001.unaln.bam 227818716 BAM S41_L003_R1 unaligned CPTAC3 ff99013c-d2a4-4514-bf33-81ab2953b29c 8174121eab279698af1f78515d2cbdbf {"aliquot_tag": "ALQ_d8fbe662", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00496.miRNA-Seq.T.hg38 C3N-00496 CCRCC miRNA-Seq tumor CPT0379630012 3c053384-4119-47ed-bba1-e163bfd35bfa_mirnaseq_gdc_realn.bam 243070675 BAM harmonized CPTAC3 22188db3-37e4-4fba-ac06-4305f6ea59e8 fbaa8df680b7cd4c5b400b8289f8206c {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor"} -C3N-00496.RNA-Seq.chimeric.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.chimeric.gdc_realn.bam 70464722 BAM chimeric harmonized CPTAC3 bce6d269-a86a-4c4b-8299-11aad2fc4114 40aa20a6749b600573781cfc0373f7e7 {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor"} -C3N-00496.RNA-Seq.genomic.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.genomic.gdc_realn.bam 8681351149 BAM genomic harmonized CPTAC3 a51924e4-7bef-459a-9743-745995b62ac4 e52b807ba0ca129a6858b53fa416102b {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor"} -C3N-00496.RNA-Seq.S30_L008_R1.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4028324968 FASTQ S30_L008_R1 unaligned CPTAC3 13b9c739-e5c8-4a14-9a77-8b2375da111f f2715831e82b75188181e53302f73a33 {"aliquot_tag": "ALQ_d8fbe662", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00496.RNA-Seq.S30_L008_R2.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4734387379 FASTQ S30_L008_R2 unaligned CPTAC3 dbe21c0a-6051-4be1-ae32-1637b875cf8a a5a11ef51d1ea2ad24fc1acc7391f902 {"aliquot_tag": "ALQ_d8fbe662", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00496.RNA-Seq.transcriptome.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.transcriptome.gdc_realn.bam 10786553864 BAM transcriptome harmonized CPTAC3 93c39d8d-a0a8-4c2b-983b-23a239cc1e2e 0cdd782a24465de5a2a98644b2c3e5a6 {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor"} -C3N-00496.WGS.N C3N-00496 CCRCC WGS blood_normal CPT0379730002 CPT0379730002.WholeGenome.RP-2158.bam 23907424056 BAM aligned CPTAC3 52a3b6b0-ed63-48d9-af5c-4334b7ccc62b 68f2d27f6550ab035f2cdadb45f344dc {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal"} -C3N-00496.WGS.N.hg38 C3N-00496 CCRCC WGS blood_normal CPT0379730002 6672269a-f6f7-41a6-b611-39ba4502662b_wgs_gdc_realn.bam 71732320668 BAM harmonized CPTAC3 4882c3f4-e219-4aee-9e91-db3566038fad 50465af76a7bb715ed85321829529fb2 {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal"} -C3N-00496.WGS.T C3N-00496 CCRCC WGS tumor CPT0379630015 CPT0379630015.WholeGenome.RP-2158.bam 31784922699 BAM aligned CPTAC3 7a28d89b-36ad-4b85-a7a8-06fe6384c18d bc0dd4d59573f9cc218d20b175a191fc {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor"} -C3N-00496.WGS.T.hg38 C3N-00496 CCRCC WGS tumor CPT0379630015 1752f596-eb8d-4595-8c57-cd04c60a3cc6_wgs_gdc_realn.bam 96875269414 BAM harmonized CPTAC3 db9db329-5a80-45d2-a76c-ee0bed032325 86cf8d02d3a109555d012bcbff7d222c {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor"} -C3N-00496.WXS.A C3N-00496 CCRCC WXS tissue_normal CPT0379670010 CPT0379670010.WholeExome.RP-1303.bam 24362334857 BAM aligned CPTAC3 100a43ef-ec2a-4d38-a012-ba04481b0721 dd355a5a33016440f719aaa7afcfef5d {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00496.WXS.A.hg38 C3N-00496 CCRCC WXS tissue_normal CPT0379670010 c885a2d7-d576-42fa-b547-de05ef105979_wxs_gdc_realn.bam 33238594138 BAM harmonized CPTAC3 2a412a2f-2fe6-46e5-8f96-5085015c8a62 9f8ec848da8e183c5bb98b89d6191847 {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00496.WXS.N C3N-00496 CCRCC WXS blood_normal CPT0379730002 CPT0379730002.WholeExome.RP-1303.bam 23818506896 BAM aligned CPTAC3 3b55bbf1-c957-4c3d-9cde-c075be54e9c0 c1b8fbc5bf20395309abe3e46d6e48e0 {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal"} -C3N-00496.WXS.N.hg38 C3N-00496 CCRCC WXS blood_normal CPT0379730002 6672269a-f6f7-41a6-b611-39ba4502662b_wxs_gdc_realn.bam 32979346906 BAM harmonized CPTAC3 28619a36-a4d5-4dfb-97dd-3748c3c74d75 b8a73e347d4c1adcd955e29fec617e49 {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal"} -C3N-00496.WXS.T C3N-00496 CCRCC WXS tumor CPT0379630015 CPT0379630015.WholeExome.RP-1303.bam 24644183614 BAM aligned CPTAC3 be3ed678-e205-4e99-a877-b936388e97db 52eddd1f082542ea7f0f8bf8f7001d21 {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor"} -C3N-00496.WXS.T.hg38 C3N-00496 CCRCC WXS tumor CPT0379630015 1752f596-eb8d-4595-8c57-cd04c60a3cc6_wxs_gdc_realn.bam 34258417288 BAM harmonized CPTAC3 2e475714-5af0-43bd-ad0b-3ea7e5cede73 8c5f32a433267185de88d339a06570f8 {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor"} -C3N-00497.MethArray.Green.A C3N-00497 LSCC Methylation_Array tissue_normal CPT0079110009 203219670180_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c398a614-7cd5-437e-89a4-c74dc1557a25 b64528cce2fed8c0fa3f4a692c6e4583 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.MethArray.Green.T C3N-00497 LSCC Methylation_Array tumor CPT0079100009 202184990059_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3ef46cdb-c068-49b1-851e-c8554ab7162e 0b9c0d69962de7fce6e126bb709736d1 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor"} -C3N-00497.MethArray.Red.A C3N-00497 LSCC Methylation_Array tissue_normal CPT0079110009 203219670180_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 bc16ead5-a98b-4dc7-81ce-445206d7efc1 db3c6801754b950a8d9bb9309477e7dc {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.MethArray.Red.T C3N-00497 LSCC Methylation_Array tumor CPT0079100009 202184990059_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 c53f4dce-5bd5-4cea-b597-266706a02b2f f2fb04359021ab15cc6ac4fde9a034bb {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor"} -C3N-00497.miRNA-Seq.A.hg38 C3N-00497 LSCC miRNA-Seq tissue_normal CPT0079110006 d77040a9-3861-4fbd-8c50-ea64a5734896_mirnaseq_gdc_realn.bam 297933406 BAM harmonized CPTAC3 744b5277-2792-426a-816d-a526d5c4adcb d27a1335330761d5316d29e343dfb003 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.miRNA-Seq.S10_L008_R1.T C3N-00497 LSCC miRNA-Seq tumor CPT0079100006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L008_R1_001.unaln.bam 266032771 BAM S10_L008_R1 unaligned CPTAC3 7e784da4-cf3b-4d98-a0c9-686fe05943dd bde04e3862435cf3addcbed3f562bbc1 {"aliquot_tag": "ALQ_a5a56597", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00497.miRNA-Seq.S35_L006_R1.A C3N-00497 LSCC miRNA-Seq tissue_normal CPT0079110006 181113_UNC31-K00269_0164_AH23NNBBXY_GGCTAC_S35_L006_R1_001.unaln.bam 268565136 BAM S35_L006_R1 unaligned CPTAC3 5dfebc41-248e-4fc1-ab32-fdd755516157 7c6bf8ea327b94c6182ccff8c89c5dcf {"aliquot_tag": "ALQ_98c54c27", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.miRNA-Seq.T.hg38 C3N-00497 LSCC miRNA-Seq tumor CPT0079100006 3ec8b324-9ba4-4e6c-a1f9-4b041e09a076_mirnaseq_gdc_realn.bam 296970992 BAM harmonized CPTAC3 a377ec3b-3256-4ba6-b461-8f8ff634a45c e2fc7ce01368b97fb8c863f2b87429ab {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor"} -C3N-00497.RNA-Seq.chimeric.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.chimeric.gdc_realn.bam 53866959 BAM chimeric harmonized CPTAC3 64f60796-94e6-4a4c-a96e-830c274905d9 c2d0f7a479b84ea880316ea0184a6643 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.RNA-Seq.chimeric.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.chimeric.gdc_realn.bam 147968321 BAM chimeric harmonized CPTAC3 ad76f466-8de4-41c7-ab32-818673709413 6366ac4ffa9182a3c504bea5bb6f6e32 {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor"} -C3N-00497.RNA-Seq.genomic.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.genomic.gdc_realn.bam 10107793879 BAM genomic harmonized CPTAC3 e739c349-7952-4d7a-b6d7-cae90849241c 28b40e6f8f4997ed5464d1d6cca75801 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.RNA-Seq.genomic.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.genomic.gdc_realn.bam 9344228972 BAM genomic harmonized CPTAC3 4ad11ca3-8fde-4e54-b4f1-fc8c23b4e5d8 246e7f2bfc3a8fc59845c2f684e06c9f {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor"} -C3N-00497.RNA-Seq.S17_L005_R1.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4379456928 FASTQ S17_L005_R1 unaligned CPTAC3 19a19ac1-2b61-496f-9ed2-fdc9ed5513ac c66ad2bf489457bb4268c451ebaa9586 {"aliquot_tag": "ALQ_98c54c27", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.RNA-Seq.S17_L005_R2.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4992615080 FASTQ S17_L005_R2 unaligned CPTAC3 dd7d88a3-7b64-4f73-ae34-3d7b2e623cb0 953ed51451aadbd7fff5cef4b9eb9b97 {"aliquot_tag": "ALQ_98c54c27", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.RNA-Seq.S1_L001_R1.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4060660495 FASTQ S1_L001_R1 unaligned CPTAC3 3abcf0ae-6cf0-4ad4-9818-824fc91c3f22 a7c56aa4e02c72dfa23f2073bcb1ab9d {"aliquot_tag": "ALQ_a5a56597", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00497.RNA-Seq.S1_L001_R2.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4537007198 FASTQ S1_L001_R2 unaligned CPTAC3 fa89125b-2e2a-42a5-bfdd-471f7b71f0a4 962601f19206d889f9ede55493291fe5 {"aliquot_tag": "ALQ_a5a56597", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00497.RNA-Seq.transcriptome.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.transcriptome.gdc_realn.bam 11641702332 BAM transcriptome harmonized CPTAC3 935b302c-dc17-49ef-87c2-fcbd02558813 8d6e7199495ffa19ee9b3f83502c87e6 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.RNA-Seq.transcriptome.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.transcriptome.gdc_realn.bam 10878842005 BAM transcriptome harmonized CPTAC3 50b8f4f2-0fc8-4082-b8ee-91e76f95dc6a 7cfc1adf619fdca6fa61a32776239b40 {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor"} -C3N-00497.WGS.A C3N-00497 LSCC WGS tissue_normal CPT0079110009 CPT0079110009.WholeGenome.RP-1303.bam 56550526318 BAM aligned CPTAC3 a60441c3-bc4a-4f53-be46-370abe0a2736 d92fb134bf78c7e4df6a29821c356f6f {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.WGS.A.hg38 C3N-00497 LSCC WGS tissue_normal CPT0079110009 baf7ec82-a326-4be6-a469-1a24548643f1_wgs_gdc_realn.bam 81993469330 BAM harmonized CPTAC3 bec1eae8-9b6c-4139-ac14-8ae15ae345d1 c11409e5a50061446ab3e921ccf49669 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.WGS.N C3N-00497 LSCC WGS blood_normal CPT0079140002 CPT0079140002.WholeGenome.RP-1303.bam 62110681294 BAM aligned CPTAC3 313afa86-a1c3-46fd-8cef-bc769e1969d4 3dde89afd5ad38aa80ef5256a5777ae3 {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00497.WGS.N.hg38 C3N-00497 LSCC WGS blood_normal CPT0079140002 ea81ec55-f07b-4547-955c-d30f38815c4f_gdc_realn.bam 91139802227 BAM harmonized CPTAC3 573a65d6-7991-4edf-a387-fda73368928e f3dc48ad424017a9038fbff12907530d {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00497.WGS.T C3N-00497 LSCC WGS tumor CPT0079100009 CPT0079100009.WholeGenome.RP-1303.bam 62974445917 BAM aligned CPTAC3 eb5dcf11-2f7f-43ba-a155-8b338c19c098 8c5687d2030eef284e136622dc015ae2 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor"} -C3N-00497.WGS.T.hg38 C3N-00497 LSCC WGS tumor CPT0079100009 a505c2ad-3df9-4e1d-a4c0-de78601088a6_gdc_realn.bam 93673276262 BAM harmonized CPTAC3 24ad9c9b-7bb0-48bf-92ec-d8c5fe53e3ef 63a7fe2e82fa8c32e343c240b5615bd8 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor"} -C3N-00497.WXS.A C3N-00497 LSCC WXS tissue_normal CPT0079110009 CPT0079110009.WholeExome.RP-1303.bam 28134536764 BAM aligned CPTAC3 70f73750-503d-46b7-9e93-8982b324ec9e 12d3c6dee98069088b5a40f32d9d4d84 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.WXS.A.hg38 C3N-00497 LSCC WXS tissue_normal CPT0079110009 baf7ec82-a326-4be6-a469-1a24548643f1_wxs_gdc_realn.bam 37254230398 BAM harmonized CPTAC3 281278bc-9daf-4d4b-874c-7bdbdb7febfb a60c3838433a41be9e7796e7cff4e7f8 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00497.WXS.N C3N-00497 LSCC WXS blood_normal CPT0079140002 CPT0079140002.WholeExome.RP-1303.bam 30000306246 BAM aligned CPTAC3 dec3ae35-4e9d-48c2-80d4-803b780356c5 7200d7fa36677f45b980ff76af9149fe {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00497.WXS.N.hg38 C3N-00497 LSCC WXS blood_normal CPT0079140002 ea81ec55-f07b-4547-955c-d30f38815c4f_gdc_realn.bam 40519337943 BAM harmonized CPTAC3 598a9eb0-2b5a-4f39-a887-06b08a40f2eb f854fb3095e401318aef22ca46d1f19d {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00497.WXS.T C3N-00497 LSCC WXS tumor CPT0079100009 CPT0079100009.WholeExome.RP-1303.bam 28872877875 BAM aligned CPTAC3 1ff832e7-fb15-4536-a342-53426a77805c 45834cb8f251eb0b97f9243ed1eb2652 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor"} -C3N-00497.WXS.T.hg38 C3N-00497 LSCC WXS tumor CPT0079100009 a505c2ad-3df9-4e1d-a4c0-de78601088a6_gdc_realn.bam 39709733235 BAM harmonized CPTAC3 99921753-5bc6-4b6a-89dc-c7b006ac313a 61aa57e30bb6c99f86bc6fa563104447 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor"} -C3N-00498.MethArray.Green.T C3N-00498 HNSCC Methylation_Array tumor CPT0013000010 202178770083_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f327bff1-5754-4838-a74f-3d1c865e4e67 e065939dfbc5c17ad72d55c6e104a8de {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor"} -C3N-00498.MethArray.Red.T C3N-00498 HNSCC Methylation_Array tumor CPT0013000010 202178770083_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6d2f5b49-db63-4b35-b932-c444e8c87eda fc6578bda626848e93bd430ab31b2c30 {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor"} -C3N-00498.miRNA-Seq.A.hg38 C3N-00498 HNSCC miRNA-Seq tissue_normal CPT0013030010 c8e46bc0-82af-4bbf-a588-8023d45362ca_mirnaseq_gdc_realn.bam 228172387 BAM harmonized CPTAC3 ad48d353-a1fe-41f2-b4db-b2573893d2a8 9c699ff6969d922fe6e73f6deed5cdee {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00498.miRNA-Seq.S21_L001_R1.T C3N-00498 HNSCC miRNA-Seq tumor CPT0013000007 180924_UNC31-K00269_0154_AHWTMLBBXX_GCCAAT_S21_L001_R1_001.unaln.bam 201276422 BAM S21_L001_R1 unaligned CPTAC3 445cd50c-52e5-4f10-874b-cd24163e8cc7 1c9cb8f28c92a6d81e5dea8fc99cc51c {"aliquot_tag": "ALQ_7be1d06d", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00498.miRNA-Seq.S8_L005_R1.A C3N-00498 HNSCC miRNA-Seq tissue_normal CPT0013030010 181113_UNC31-K00269_0164_AH23NNBBXY_CACTCA_S8_L005_R1_001.unaln.bam 201105215 BAM S8_L005_R1 unaligned CPTAC3 c7f029b5-7fb8-4a75-816c-88848a8b1d8a 24fbe9ad2225a3e1659f0a1e4bf87bf5 {"aliquot_tag": "ALQ_bb3e0e5f", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00498.miRNA-Seq.T.hg38 C3N-00498 HNSCC miRNA-Seq tumor CPT0013000007 312697f6-70ff-45ce-9092-376f86aa223d_mirnaseq_gdc_realn.bam 227808080 BAM harmonized CPTAC3 5b8d829f-81ad-4465-a9ed-f623530d2217 76f956c727901010c780bd76fd302407 {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor"} -C3N-00498.RNA-Seq.chimeric.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.chimeric.gdc_realn.bam 23225826 BAM chimeric harmonized CPTAC3 0cc87447-2554-4629-a1a3-7d4b7eb4fde8 d61f50b32672c3dfc1b267b876812ce7 {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00498.RNA-Seq.chimeric.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.chimeric.gdc_realn.bam 78981889 BAM chimeric harmonized CPTAC3 8bdfa029-8ff8-4be0-8f4c-57ce4f465a8a 0b612eec310084b31dd307c609ff7e60 {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor"} -C3N-00498.RNA-Seq.genomic.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.genomic.gdc_realn.bam 8385912780 BAM genomic harmonized CPTAC3 539009af-7588-41aa-baa4-d56452f2604c c8ee97e6b3775b0bb39f3c69cc82d21f {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00498.RNA-Seq.genomic.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.genomic.gdc_realn.bam 9737670945 BAM genomic harmonized CPTAC3 cbcf2eac-280f-4ad1-960f-f42f96843a90 08ba1aaa61b793c9fde7eec6f2a30e5b {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor"} -C3N-00498.RNA-Seq.S11_L008_R1.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R1_001.fastq.gz 4273765686 FASTQ S11_L008_R1 unaligned CPTAC3 ed67a97a-0690-4901-88ca-439c5ab6bc7d 2dcbef9ef6b214ef733d274aee615875 {"aliquot_tag": "ALQ_7be1d06d", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00498.RNA-Seq.S11_L008_R2.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R2_001.fastq.gz 4672445899 FASTQ S11_L008_R2 unaligned CPTAC3 888acb67-c9e7-40ee-a6c6-3c0e18a7ffc1 f3df04c2832debcf79bbc2e034728259 {"aliquot_tag": "ALQ_7be1d06d", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00498.RNA-Seq.S31_L008_R1.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R1_001.fastq.gz 3226531265 FASTQ S31_L008_R1 unaligned CPTAC3 b670d3bf-a39b-4b8e-9a5e-232772b9939f 9caed3388abe7eeadb77a123af71c7f3 {"aliquot_tag": "ALQ_bb3e0e5f", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00498.RNA-Seq.S31_L008_R2.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R2_001.fastq.gz 3494017219 FASTQ S31_L008_R2 unaligned CPTAC3 02d65ea6-0dbe-4412-902c-b2fd19487593 f8f374cca7375b087b2c62648fff3b03 {"aliquot_tag": "ALQ_bb3e0e5f", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00498.RNA-Seq.transcriptome.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.transcriptome.gdc_realn.bam 8855972111 BAM transcriptome harmonized CPTAC3 447a1bfb-4735-4b85-a03e-4f123173b287 2c6615197316e22ceede1e0772120ce3 {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00498.RNA-Seq.transcriptome.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.transcriptome.gdc_realn.bam 10255674919 BAM transcriptome harmonized CPTAC3 b74b7baa-9a18-448d-92f8-08f712388fb1 eff021795000c4f11047ed1807c64f18 {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor"} -C3N-00498.WGS.N C3N-00498 HNSCC WGS blood_normal CPT0013090002 CPT0013090002.WholeGenome.RP-1303.bam 66029020313 BAM aligned CPTAC3 f32c041e-8ccc-4192-ac65-55c8fc935ad7 3904a3f976c43652a48f83856deab604 {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal"} -C3N-00498.WGS.N.hg38 C3N-00498 HNSCC WGS blood_normal CPT0013090002 ae19af2b-2847-48a7-bbd8-413c8b0d3720_gdc_realn.bam 98249186693 BAM harmonized CPTAC3 ba88d55b-5908-4a0a-8e8b-72e4af321ed1 7e7b0395a28ff2ae566eef1806adf79f {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal"} -C3N-00498.WGS.T C3N-00498 HNSCC WGS tumor CPT0013000010 CPT0013000010.WholeGenome.RP-1303.bam 71122188674 BAM aligned CPTAC3 1400255c-3c11-4a0c-9b1f-d2682803f441 2f4dff58906cb772f6cb6c2ac672eb4d {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor"} -C3N-00498.WGS.T.hg38 C3N-00498 HNSCC WGS tumor CPT0013000010 2d6748ff-846e-4f6c-9278-22f421c7a32a_gdc_realn.bam 105046099295 BAM harmonized CPTAC3 07e10191-4dd1-4a4f-be4a-89e7bb7ef9a4 272601b7095ccf2585caff1e51e35db4 {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor"} -C3N-00498.WXS.N C3N-00498 HNSCC WXS blood_normal CPT0013090002 CPT0013090002.WholeExome.RP-1303.bam 26740514587 BAM aligned CPTAC3 847bfaf3-0dfc-4eb8-985f-7471136866ef ad9cd58860f6aff3580c5fc2a8dbf56b {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal"} -C3N-00498.WXS.N.hg38 C3N-00498 HNSCC WXS blood_normal CPT0013090002 ae19af2b-2847-48a7-bbd8-413c8b0d3720_gdc_realn.bam 36792148788 BAM harmonized CPTAC3 f2f1e455-e8d9-4c87-bbdd-825a120412f8 7914735344e0115029d1800a1576620b {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal"} -C3N-00498.WXS.T C3N-00498 HNSCC WXS tumor CPT0013000010 CPT0013000010.WholeExome.RP-1303.bam 28240147139 BAM aligned CPTAC3 5901772f-3414-4e8a-a8a7-075a6a0189ac 8c0ab16be651721dcb581e1afc57924e {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor"} -C3N-00498.WXS.T.hg38 C3N-00498 HNSCC WXS tumor CPT0013000010 2d6748ff-846e-4f6c-9278-22f421c7a32a_gdc_realn.bam 38213325801 BAM harmonized CPTAC3 151bbb75-0700-4d1c-9896-a85f566a0e7b 047ad3a7edec1b37d1dfdd8259f3bb96 {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor"} -C3N-00511.ADD_4da693fd.MethArray.Green.T C3N-00511 PDA Methylation_Array tumor CPT0078250006 202184900110_R05C01_Grn.idat 13676256 IDAT Green NA CPTAC3 d6853bca-addf-4e34-9c10-d26289dcc650 0c08ce0c53926f04bd46062f4f9f5701 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00511.ADD_4da693fd.MethArray.Red.T C3N-00511 PDA Methylation_Array tumor CPT0078250006 202184900110_R05C01_Red.idat 13676256 IDAT Red NA CPTAC3 fcd2a37b-7f2f-41be-b0b5-d0aebc47f033 33bdd4d67d8ade2dc559cf7b2aff1d05 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00511.ADD_4da693fd.WGS.T C3N-00511 PDA WGS tumor CPT0078250006 CPT0078250006.WholeGenome.RP-1303.bam 73611088600 BAM aligned CPTAC3 a80759e5-1f46-4e3e-a064-4c702257ef3a f0a554d02a0c2745029df3fb52a99e07 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00511.ADD_4da693fd.WGS.T.hg38 C3N-00511 PDA WGS tumor CPT0078250006 d1efcc85-6baa-4e76-800d-81badfebf50a_gdc_realn.bam 107916579496 BAM harmonized CPTAC3 5ea6b3b4-0156-4543-b9cb-fdceec187df6 0d38dc53e806c6c42e50ad4d5f80ac63 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00511.ADD_4da693fd.WXS.T C3N-00511 PDA WXS tumor CPT0078250006 CPT0078250006.WholeExome.RP-1303.bam 30127805460 BAM aligned CPTAC3 4d5b010b-21ab-4b5f-b279-0b32070fb1c2 87a42e1ace0251ec10ed290f71357e8f {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00511.ADD_4da693fd.WXS.T.hg38 C3N-00511 PDA WXS tumor CPT0078250006 d1efcc85-6baa-4e76-800d-81badfebf50a_gdc_realn.bam 41645453083 BAM harmonized CPTAC3 23eadf0b-0740-49b1-81c9-a63acc6f67d8 7f6b45cfb2bd7d5278e2aaa00bcb75cb {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00511.miRNA-Seq.S44_L007_R1.T C3N-00511 PDA miRNA-Seq tumor CPT0078250009 181012_UNC32-K00270_0124_AH223CBBXY_GGTAGC_S44_L007_R1_001.unaln.bam 217571620 BAM S44_L007_R1 unaligned CPTAC3 e4bec376-0b91-45a4-91a0-84922554953b 37d3f83ff703ddd66c40b6db4c605da8 {"aliquot_tag": "ALQ_dd198e6c", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00511.miRNA-Seq.T.hg38 C3N-00511 PDA miRNA-Seq tumor CPT0078250009 88ca37fc-eb00-4de2-ac83-fc2c4a9149fd_mirnaseq_gdc_realn.bam 241752415 BAM harmonized CPTAC3 29b35319-424f-4568-93aa-84d9384ff37f 9007d4e163f39ed5a7676a221a8d6882 {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor"} -C3N-00511.RNA-Seq.chimeric.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.chimeric.gdc_realn.bam 69530481 BAM chimeric harmonized CPTAC3 e18d131e-9601-481d-9901-144abdb9d36b 2c878cbca7582f34fc1ba7e757a63add {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor"} -C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.genomic.gdc_realn.bam 8063179150 BAM genomic harmonized CPTAC3 012d4018-7beb-46c6-be39-395c8f009559 62010dd79da8b26c4d3d4fbd38b93234 {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor"} -C3N-00511.RNA-Seq.S1_L007_R1.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3618545492 FASTQ S1_L007_R1 unaligned CPTAC3 7981a9cf-0215-4cf5-99d0-de2f99fb25cc b393b2210c0d4b8857185d584c2dcd14 {"aliquot_tag": "ALQ_dd198e6c", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00511.RNA-Seq.S1_L007_R2.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3905021077 FASTQ S1_L007_R2 unaligned CPTAC3 e66fe6f2-9722-41a3-baf7-dd9c097a090a 5b30c795eb3e7d5a7ff7583dfe9549e2 {"aliquot_tag": "ALQ_dd198e6c", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00511.RNA-Seq.transcriptome.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.transcriptome.gdc_realn.bam 9231772618 BAM transcriptome harmonized CPTAC3 3a60feed-8655-41f1-bc95-3b573dba85ff 7e17ec6af665d33e930cba700fd07958 {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor"} -C3N-00511.WGS.N C3N-00511 PDA WGS blood_normal CPT0078310002 CPT0078310002.WholeGenome.RP-1303.bam 65114654545 BAM aligned CPTAC3 b956585d-ab87-4cd3-8771-d230d9c4a9e8 b1b8417882a827c8aef44ccd5641664e {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal"} -C3N-00511.WGS.N.hg38 C3N-00511 PDA WGS blood_normal CPT0078310002 4769f91e-a396-48e9-a979-2ea2ad5b550c_gdc_realn.bam 95883555582 BAM harmonized CPTAC3 889fd6db-ed7b-4aa8-bc73-baa7ee9db36f 877e7033499e8da2133c820dfc88bd05 {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal"} -C3N-00511.WXS.N C3N-00511 PDA WXS blood_normal CPT0078310002 CPT0078310002.WholeExome.RP-1303.bam 23878663203 BAM aligned CPTAC3 f56ab256-bfe4-404a-8706-b6f1f506d848 c8a485eaa90d7230ef4cb6018062450d {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal"} -C3N-00511.WXS.N.hg38 C3N-00511 PDA WXS blood_normal CPT0078310002 4769f91e-a396-48e9-a979-2ea2ad5b550c_gdc_realn.bam 32313176425 BAM harmonized CPTAC3 f11b65a5-4715-4fc2-979e-17d898de274c c01b39d3ac550262226ee2d8bcfdd355 {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal"} -C3N-00511.WXS.T C3N-00511 PDA WXS tumor CPT0078250006_1 CPT0078250006_1.WholeExome.RP-1303.bam 56251339959 BAM aligned CPTAC3 620a440e-14e3-41f3-b487-ca5691bce30a 1bf1e695ca947fc7c4e026ed6aae59a8 {"aliquot_tag": "ALQ_e53043f6", "gdc_sample_type": "Primary Tumor"} -C3N-00511.WXS.T.hg38 C3N-00511 PDA WXS tumor CPT0078250006_1 8d21aeea-4893-4c72-ae6f-cc6d35624519_wxs_gdc_realn.bam 77980014328 BAM harmonized CPTAC3 0f5cf6e2-cb7a-4823-af4a-ecbcdbef768d bc3968265fd004c6c5e236bf897d4c40 {"aliquot_tag": "ALQ_e53043f6", "gdc_sample_type": "Primary Tumor"} -C3N-00512.MethArray.Green.A C3N-00512 PDA Methylation_Array tissue_normal CPT0078180006 203561450048_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3d2ebfac-8a81-4ac0-b045-64b9c45575d6 c0aa7c36b0e6ba962e91394831005134 {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00512.MethArray.Green.T C3N-00512 PDA Methylation_Array tumor CPT0078160007 202184900148_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 c16e4d13-6b0a-4000-9fe3-522f3a27aa99 54a6316c7b2c8d9327263a85b0632e5e {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor"} -C3N-00512.MethArray.Red.A C3N-00512 PDA Methylation_Array tissue_normal CPT0078180006 203561450048_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 c3ab0448-78f6-47d0-88a5-d5431d63be51 b9ed829da94f0e6b628999225cab9378 {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00512.MethArray.Red.T C3N-00512 PDA Methylation_Array tumor CPT0078160007 202184900148_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 7ab6984a-b104-4df3-a7e2-38d48733f336 545ed04b7196cfebc1e1719eaf27b2b0 {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor"} -C3N-00512.miRNA-Seq.S43_L007_R1.T C3N-00512 PDA miRNA-Seq tumor CPT0078160010 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L007_R1_001.unaln.bam 240414480 BAM S43_L007_R1 unaligned CPTAC3 76da2922-5dec-4e3d-97e0-35648713d4ac 9b5fe60d32c307ce4e05ea3ee21ae50c {"aliquot_tag": "ALQ_7cea0ff7", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00512.miRNA-Seq.T.hg38 C3N-00512 PDA miRNA-Seq tumor CPT0078160010 6ead8a40-477d-49fe-88fa-233ce457e7bc_mirnaseq_gdc_realn.bam 270210259 BAM harmonized CPTAC3 7f6f91ac-0060-48f8-a242-e0ea953334f6 5fa23a2bcce6c4747d12d0695e9317d1 {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor"} -C3N-00512.RNA-Seq.chimeric.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.chimeric.gdc_realn.bam 82329490 BAM chimeric harmonized CPTAC3 79377655-347a-41fb-a8f6-86353f338643 d27a7f82818bad052c2af5c4546ee7e4 {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor"} -C3N-00512.RNA-Seq.genomic.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.genomic.gdc_realn.bam 11130019810 BAM genomic harmonized CPTAC3 02782ed3-d192-42a9-bb66-affdfe329a9e b0c08ed2c410a6748a0c807e9c4fbe12 {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor"} -C3N-00512.RNA-Seq.S2_L007_R1.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4175780551 FASTQ S2_L007_R1 unaligned CPTAC3 dd562d7c-a718-4244-878a-9d455ef427e8 09c41dd0a9c20fbe7558537624526ef0 {"aliquot_tag": "ALQ_7cea0ff7", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00512.RNA-Seq.S2_L007_R2.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4512232208 FASTQ S2_L007_R2 unaligned CPTAC3 252c7281-896e-4e57-acee-a4e3d2c17371 74b57e38d77bcc8ac102b679c18b1f73 {"aliquot_tag": "ALQ_7cea0ff7", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00512.RNA-Seq.transcriptome.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.transcriptome.gdc_realn.bam 10770391237 BAM transcriptome harmonized CPTAC3 6cb57faa-c17e-45b9-a2d3-c66fc006ac64 3a85453c461c5131c94b37c9969f783d {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WGS.A C3N-00512 PDA WGS tissue_normal CPT0078180006 CPT0078180006.WholeGenome.RP-1303.bam 58868764711 BAM aligned CPTAC3 2bed83a4-ae5b-4eec-83bd-f3af48429635 59c0aed05c6826a3534689897f357b14 {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00512.WGS.A.hg38 C3N-00512 PDA WGS tissue_normal CPT0078180006 4c0eab19-fc9a-4c28-a7f1-b75ba0c41127_wgs_gdc_realn.bam 88236657574 BAM harmonized CPTAC3 8a8c7167-a577-4c7b-954b-908da4effb4f 0a911c06aee6e6c59793816d4c7390ba {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00512.WGS.N C3N-00512 PDA WGS blood_normal CPT0078220002 CPT0078220002.WholeGenome.RP-1303.bam 76558062357 BAM aligned CPTAC3 710e8d7c-666b-485c-b6a0-a178d943d3f4 1e271a3969516a040d03c1bc266528ee {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00512.WGS.N.hg38 C3N-00512 PDA WGS blood_normal CPT0078220002 3f8f91f0-a20d-46af-8982-9c908cdd9813_gdc_realn.bam 113537922672 BAM harmonized CPTAC3 ef84c829-596a-41e6-8af8-546c11bd1b85 6e69c150a761d1a6f64020ee3d873190 {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00512.WGS.T C3N-00512 PDA WGS tumor CPT0078160007_1 CPT0078160007_1.WholeGenome.RP-1303.bam 114809107724 BAM aligned CPTAC3 93c5005e-e088-4c90-bcc4-bae05178c40d 8e3ab035cbf2cb1750717cc7f183b160 {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WGS.T C3N-00512 PDA WGS tumor CPT0078160007 CPT0078160007.WholeGenome.RP-1303.bam 73525359656 BAM aligned CPTAC3 edacef3d-565d-4fbc-967c-9a1fdfbe52a7 dd7fac6df2fcb032a6cf38e4d2fcaf5c {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WGS.T.hg38 C3N-00512 PDA WGS tumor CPT0078160007_1 8801d43d-44fd-429b-80b6-d4183e42b10b_wgs_gdc_realn.bam 170651930618 BAM harmonized CPTAC3 056ae090-5976-44f9-8779-dd762af2a679 0fcc3be44d448138294d9451e47d7b29 {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WGS.T.hg38 C3N-00512 PDA WGS tumor CPT0078160007 d6eeb787-9ba5-43b3-9e26-174015bb0a88_gdc_realn.bam 111050376047 BAM harmonized CPTAC3 a7ea1930-731f-45e4-9e2d-62fcea44aa7d a08741bba301cef7dbffe2dad3e6e97d {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WXS.A C3N-00512 PDA WXS tissue_normal CPT0078180006 CPT0078180006.WholeExome.RP-1303.bam 26553304816 BAM aligned CPTAC3 9115b469-e35d-4a18-b7c1-cfb010bf20ca 0addd4d749c12e0de553da725c46174b {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00512.WXS.A.hg38 C3N-00512 PDA WXS tissue_normal CPT0078180006 4c0eab19-fc9a-4c28-a7f1-b75ba0c41127_wxs_gdc_realn.bam 35609128069 BAM harmonized CPTAC3 e2477bca-d32d-449c-97af-4bfa159b73bc ddade8efcfc0421bb6cc277446739d2e {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00512.WXS.N C3N-00512 PDA WXS blood_normal CPT0078220002 CPT0078220002.WholeExome.RP-1303.bam 30853776252 BAM aligned CPTAC3 67d2c8c5-c556-4404-a50e-d4ac64a5d432 a9a1485f333379d1ecc81b39b0f33f54 {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00512.WXS.N.hg38 C3N-00512 PDA WXS blood_normal CPT0078220002 3f8f91f0-a20d-46af-8982-9c908cdd9813_gdc_realn.bam 41923521927 BAM harmonized CPTAC3 6fa8d244-1cb0-4ebb-8539-5adc29c5cc4f e153a314312d38e8c251077afc3c597e {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00512.WXS.T C3N-00512 PDA WXS tumor CPT0078160007_1 CPT0078160007_1.WholeExome.RP-1303.bam 56111660376 BAM aligned CPTAC3 ab6cb158-cacc-478e-ab0e-49dd04978bbe 0c54a3804fc36f571cdfdcb590af720d {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WXS.T C3N-00512 PDA WXS tumor CPT0078160007 CPT0078160007.WholeExome.RP-1303.bam 29855764409 BAM aligned CPTAC3 99324db0-81f8-46d4-bdcd-bb4ba53c49c8 031cdc32b4313f56de913fff180fe9f1 {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WXS.T.hg38 C3N-00512 PDA WXS tumor CPT0078160007_1 8801d43d-44fd-429b-80b6-d4183e42b10b_wxs_gdc_realn.bam 77295266622 BAM harmonized CPTAC3 c4191cf2-01a5-4956-b060-696defdef03b ca785c1456bb85f63e795123bc79e5fe {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor"} -C3N-00512.WXS.T.hg38 C3N-00512 PDA WXS tumor CPT0078160007 d6eeb787-9ba5-43b3-9e26-174015bb0a88_gdc_realn.bam 41520448945 BAM harmonized CPTAC3 21098a60-ee40-4c8e-a458-65df9be3c628 1d598ae7ae4c8994f931fddb0ffd29d2 {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor"} -C3N-00513.MethArray.Green.A C3N-00513 PDA Methylation_Array tissue_normal CPT0077810006 203561450027_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b04069ce-856f-4606-8616-3a92ce4e412c ed21aa49799906190c2ba7db8c353e9e {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00513.MethArray.Green.T C3N-00513 PDA Methylation_Array tumor CPT0077790007 202184990059_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4d2d61c9-4de0-4f02-9a24-32563eada3de 860bec2143d1e2527cf4a7cd1b55e755 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor"} -C3N-00513.MethArray.Red.A C3N-00513 PDA Methylation_Array tissue_normal CPT0077810006 203561450027_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 c607d471-bb39-4852-8245-4407216d614e ddb45eeba4917c41887a538a78aa4710 {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00513.MethArray.Red.T C3N-00513 PDA Methylation_Array tumor CPT0077790007 202184990059_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 45b84587-ca30-4f54-bc2f-cd96bebceb9b 4bf2d35fcf27b1b3eaabcc7a880938e4 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor"} -C3N-00513.miRNA-Seq.S39_L007_R1.T C3N-00513 PDA miRNA-Seq tumor CPT0077790010 181012_UNC32-K00270_0124_AH223CBBXY_GTCCGC_S39_L007_R1_001.unaln.bam 260368864 BAM S39_L007_R1 unaligned CPTAC3 98abf75c-c81c-4d9a-bb3b-7a345c5fb37a eb22c84cb29ef9f19b72db5ee7f1064d {"aliquot_tag": "ALQ_deab0bd2", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00513.miRNA-Seq.T.hg38 C3N-00513 PDA miRNA-Seq tumor CPT0077790010 743ea3ca-3314-48f3-ad3d-226e6ea5a6c9_mirnaseq_gdc_realn.bam 288697793 BAM harmonized CPTAC3 7c28263e-f4cc-4b08-8ed6-f95438427b37 e64f515b82465e56e4bf3dc3d413aa2f {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor"} -C3N-00513.RNA-Seq.chimeric.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.chimeric.gdc_realn.bam 67750820 BAM chimeric harmonized CPTAC3 5b27acd3-273b-4c0e-966c-1006e9c3c185 775758473f9fdf931560f301c8427c14 {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor"} -C3N-00513.RNA-Seq.genomic.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.genomic.gdc_realn.bam 7724467128 BAM genomic harmonized CPTAC3 d4fd86c6-bf72-47f9-82aa-6e9ca6b958fb 86c644ef917fa52705b99a36d66789c1 {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor"} -C3N-00513.RNA-Seq.S5_L008_R1.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3548500935 FASTQ S5_L008_R1 unaligned CPTAC3 9a816fe4-a1f8-4321-86a2-1a09419b0942 d16f66a264f59cbe4718078c8715cc6d {"aliquot_tag": "ALQ_deab0bd2", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00513.RNA-Seq.S5_L008_R2.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3930731261 FASTQ S5_L008_R2 unaligned CPTAC3 37f1f57f-09e3-47d4-a92e-dfdbbfeac63c 7fe622a5d9934b3ed9552d5e90a6aa82 {"aliquot_tag": "ALQ_deab0bd2", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00513.RNA-Seq.transcriptome.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.transcriptome.gdc_realn.bam 10481938775 BAM transcriptome harmonized CPTAC3 494c03ec-ad63-4248-995b-8dab40d2214e dd32d62359a46ac039b582fad9c529fa {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WGS.A C3N-00513 PDA WGS tissue_normal CPT0077810006 CPT0077810006.WholeGenome.RP-1303.bam 63345650267 BAM aligned CPTAC3 2354c360-cf25-47bf-86a9-0758742796d9 19f3fd6efeef02d4fb2e0f3fdfd9843d {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00513.WGS.A.hg38 C3N-00513 PDA WGS tissue_normal CPT0077810006 e26a9e7f-9f44-4c9f-9253-52a84df141f0_wgs_gdc_realn.bam 92091237374 BAM harmonized CPTAC3 af2c7cec-604c-41e9-8b9b-253021002ddb dc6af1f74ea5c9a8247babd7efdbcfd2 {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00513.WGS.N C3N-00513 PDA WGS blood_normal CPT0077850001 CPT0077850001.WholeGenome.RP-1303.bam 65506961945 BAM aligned CPTAC3 454ef3d9-c56b-44bf-be72-018d449f0601 dbbd97701b49439c58ddb79a08accd16 {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00513.WGS.N.hg38 C3N-00513 PDA WGS blood_normal CPT0077850001 e744d6af-13fc-4c98-8c34-4c06bb722546_gdc_realn.bam 101414768513 BAM harmonized CPTAC3 3f202aa4-99de-49eb-b083-91a6dcb3aadd d0f04eb89ecef35c72d1f37ae3bd79a7 {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00513.WGS.T C3N-00513 PDA WGS tumor CPT0077790007_1 CPT0077790007_1.WholeGenome.RP-1303.bam 132748494516 BAM aligned CPTAC3 3936a73f-ac48-436c-add1-1086761acc58 f84a652dc773b29b0915f529cb788cc3 {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WGS.T C3N-00513 PDA WGS tumor CPT0077790007 CPT0077790007.WholeGenome.RP-1303.bam 69388115972 BAM aligned CPTAC3 599049da-3f8b-4d38-a857-2a4c0b5b4e18 4dd0c0673855a51d6143de4de1cf2288 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WGS.T.hg38 C3N-00513 PDA WGS tumor CPT0077790007_1 b3fbb7d8-fc1c-4b3f-a07f-8081864a2d42_wgs_gdc_realn.bam 196666522741 BAM harmonized CPTAC3 f70a64ba-3efa-493b-a13b-a48a72fdf213 67f12e4b87e19273a8fbf05f9188e198 {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WGS.T.hg38 C3N-00513 PDA WGS tumor CPT0077790007 9ce8624c-05b3-4d49-8eb4-c3e101e9d229_gdc_realn.bam 104401046994 BAM harmonized CPTAC3 3126f682-9cf8-4320-9340-bc57f2d9bd1c a5da016f09c994a6f1c304f9e2424763 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WXS.A C3N-00513 PDA WXS tissue_normal CPT0077810006 CPT0077810006.WholeExome.RP-1303.bam 36374953017 BAM aligned CPTAC3 f3b84660-f168-44d4-bf0d-c424670969c4 868cf78bfddc3bdc6ab72165586a4b34 {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00513.WXS.A.hg38 C3N-00513 PDA WXS tissue_normal CPT0077810006 e26a9e7f-9f44-4c9f-9253-52a84df141f0_wxs_gdc_realn.bam 50748479096 BAM harmonized CPTAC3 5676717e-77e6-4e31-ba0f-517571efc356 18150f07b6aad6fbb13120fb967409ba {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00513.WXS.N C3N-00513 PDA WXS blood_normal CPT0077850001 CPT0077850001.WholeExome.RP-1303.bam 35892403381 BAM aligned CPTAC3 6a43dee6-6240-48ac-aef9-bcbd7973ada9 b12fa6c39b6a10851b6a780df706bb21 {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00513.WXS.N.hg38 C3N-00513 PDA WXS blood_normal CPT0077850001 e744d6af-13fc-4c98-8c34-4c06bb722546_gdc_realn.bam 48719648931 BAM harmonized CPTAC3 aad6f446-e0ad-4055-978c-24258ed8f934 f4e8b600039c3955d068c9855ff627ef {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00513.WXS.T C3N-00513 PDA WXS tumor CPT0077790007_1 CPT0077790007_1.WholeExome.RP-1303.bam 57513263524 BAM aligned CPTAC3 458616ba-ec09-40ce-b550-f6996f5d7089 0f8af781e11bfe5cace9a8220a2ebfda {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WXS.T C3N-00513 PDA WXS tumor CPT0077790007 CPT0077790007.WholeExome.RP-1303.bam 31742668967 BAM aligned CPTAC3 7b702dd2-b8a4-4e84-931c-6c1255a32d40 58397fda100e1194263113bc3beef901 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WXS.T.hg38 C3N-00513 PDA WXS tumor CPT0077790007_1 b3fbb7d8-fc1c-4b3f-a07f-8081864a2d42_wxs_gdc_realn.bam 79078031029 BAM harmonized CPTAC3 c044d978-2f60-4ab0-82e8-4581e04018c9 b0252a8a2935d0a025ae473cb32c5ded {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor"} -C3N-00513.WXS.T.hg38 C3N-00513 PDA WXS tumor CPT0077790007 9ce8624c-05b3-4d49-8eb4-c3e101e9d229_gdc_realn.bam 44023340629 BAM harmonized CPTAC3 e8203358-e359-412b-883f-ccb492a9b37b 61e3d65c797c22c4f6aaeb319bee0558 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor"} -C3N-00514.MethArray.Green.A C3N-00514 PDA Methylation_Array tissue_normal CPT0077950006 203561620085_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4fec677d-03c3-4316-a131-ec9669702111 cd60752391f3bd8793dbeb26bca85ebc {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00514.MethArray.Green.T C3N-00514 PDA Methylation_Array tumor CPT0077930007 202184900110_R06C01_Grn.idat 13676256 IDAT Green NA CPTAC3 2d8a2af9-591b-455f-b9de-0c03ecd7d692 ba351a4cc614e5b52e783b82486458ae {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor"} -C3N-00514.MethArray.Red.A C3N-00514 PDA Methylation_Array tissue_normal CPT0077950006 203561620085_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 5dfbc9d7-d70b-4d63-88f3-545d89a5d562 995975c1d3fa025037bce98c29a2623b {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00514.MethArray.Red.T C3N-00514 PDA Methylation_Array tumor CPT0077930007 202184900110_R06C01_Red.idat 13676256 IDAT Red NA CPTAC3 37c2b189-23dc-4423-ac3a-8ef714d5a7a2 78fcf4bda128ce1b21903845066e7188 {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor"} -C3N-00514.miRNA-Seq.S40_L007_R1.T C3N-00514 PDA miRNA-Seq tumor CPT0077930010 181012_UNC32-K00270_0124_AH223CBBXY_GTGGCC_S40_L007_R1_001.unaln.bam 245856655 BAM S40_L007_R1 unaligned CPTAC3 36f44b21-993f-4788-914d-55036b803f16 f2ebe2d411e62489f5b8783355716e51 {"aliquot_tag": "ALQ_ae117203", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00514.miRNA-Seq.T.hg38 C3N-00514 PDA miRNA-Seq tumor CPT0077930010 2de9af35-d95f-4b71-be2d-39a4472bb5e7_mirnaseq_gdc_realn.bam 270692019 BAM harmonized CPTAC3 7ef851bb-45b5-4252-93e8-490b0d882c93 eb7ca863bb1281dd885066c551b05ff6 {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor"} -C3N-00514.RNA-Seq.chimeric.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.chimeric.gdc_realn.bam 114439147 BAM chimeric harmonized CPTAC3 ffb29185-6f08-4f12-b58e-51774a20acfb c97a99a6fb9889ed656dc79142744a09 {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor"} -C3N-00514.RNA-Seq.genomic.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.genomic.gdc_realn.bam 8488387689 BAM genomic harmonized CPTAC3 6eda5a5f-bb84-4899-9970-a2c339d7b834 6721266734ef99e2a623e9570d50fa87 {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor"} -C3N-00514.RNA-Seq.S8_L008_R1.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4160549605 FASTQ S8_L008_R1 unaligned CPTAC3 df3495d5-2f0d-4526-bf38-dfebb44761e1 87630c0349e8ea4b3fac38b084ce31a7 {"aliquot_tag": "ALQ_ae117203", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00514.RNA-Seq.S8_L008_R2.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4536583147 FASTQ S8_L008_R2 unaligned CPTAC3 85ffbcee-b637-47c6-9537-651279b1acc0 f965ef6f109faa46f9fc56fc4b311643 {"aliquot_tag": "ALQ_ae117203", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00514.RNA-Seq.transcriptome.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.transcriptome.gdc_realn.bam 11622572283 BAM transcriptome harmonized CPTAC3 1d0303a7-131a-4bd9-8e2b-53f4bddf9133 e3dc2ae64044d6a7e0e2e9ba63543e2f {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WGS.A C3N-00514 PDA WGS tissue_normal CPT0077950006 CPT0077950006.WholeGenome.RP-1303.bam 55058915137 BAM aligned CPTAC3 2645d72d-2386-4de4-8b49-f98f305885e2 d1f62eb871ea0de66cc0085b57aff744 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00514.WGS.A.hg38 C3N-00514 PDA WGS tissue_normal CPT0077950006 08d75710-044f-4ac0-af82-e0fcbae50aa3_wgs_gdc_realn.bam 80072088272 BAM harmonized CPTAC3 77392c85-8724-4890-800b-3e71210b9483 c6ea16e22f07356bd4b03f9f033120c1 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00514.WGS.N C3N-00514 PDA WGS blood_normal CPT0077990002 CPT0077990002.WholeGenome.RP-1303.bam 81707458862 BAM aligned CPTAC3 789b3df5-2bae-4b13-ae69-db4845535ee8 19bc4bfe7a9efd5185f0322e95478f0d {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00514.WGS.N.hg38 C3N-00514 PDA WGS blood_normal CPT0077990002 eef16b63-5ce4-4ee8-89b9-d0992a129bbf_gdc_realn.bam 122204660528 BAM harmonized CPTAC3 13919a82-8173-41b7-8a26-4a43f36b646b 7e3ed20dd621cf7304cc49bc5b640319 {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00514.WGS.T C3N-00514 PDA WGS tumor CPT0077930007_1 CPT0077930007_1.WholeGenome.RP-1303.bam 125948398285 BAM aligned CPTAC3 7e989e2b-db14-4170-96db-f6e1f8b696cc beb23bfa8635c15b16002c20e495b80a {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WGS.T C3N-00514 PDA WGS tumor CPT0077930007 CPT0077930007.WholeGenome.RP-1303.bam 68575297613 BAM aligned CPTAC3 80bc9454-e4e0-4382-b890-a06769d00b9b 1855ec6a86f9da30045cdca95d06abee {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WGS.T.hg38 C3N-00514 PDA WGS tumor CPT0077930007_1 20b71c93-a724-4d9a-8b99-2d86c1af4005_wgs_gdc_realn.bam 184874591762 BAM harmonized CPTAC3 a04f0f9e-49e2-4820-8a91-e33fc101b07e 4879819bbabf0b800998835775f9c4b1 {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WGS.T.hg38 C3N-00514 PDA WGS tumor CPT0077930007 3e109583-a3ce-4b0b-8b85-a92d038457f1_gdc_realn.bam 102490694219 BAM harmonized CPTAC3 7c90efc1-7337-4dc5-b6c4-e7193e9676c7 7f54aa341b158b65b58cae54f8fc22fe {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WXS.A C3N-00514 PDA WXS tissue_normal CPT0077950006 CPT0077950006.WholeExome.RP-1303.bam 27799007459 BAM aligned CPTAC3 93783739-ab71-444d-93a0-24f02308c4a4 2f1dfac8f7e608f2d2a206d8df6529f0 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00514.WXS.A.hg38 C3N-00514 PDA WXS tissue_normal CPT0077950006 08d75710-044f-4ac0-af82-e0fcbae50aa3_wxs_gdc_realn.bam 37647689880 BAM harmonized CPTAC3 00ae3f34-f88d-4148-b8de-70b012c62bab 84dca2884f8890632d4ed33a4c13ef42 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00514.WXS.N C3N-00514 PDA WXS blood_normal CPT0077990002 CPT0077990002.WholeExome.RP-1303.bam 32492200035 BAM aligned CPTAC3 75af72dc-ea7f-4cfb-82c7-d35d9105c013 a71a53384fa072a2f9b525ad8e81c8c7 {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00514.WXS.N.hg38 C3N-00514 PDA WXS blood_normal CPT0077990002 eef16b63-5ce4-4ee8-89b9-d0992a129bbf_gdc_realn.bam 43589827183 BAM harmonized CPTAC3 2752a15a-c83f-4cb5-bc30-950425577243 034a8ef465528f398f3b1d029762e2f4 {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00514.WXS.T C3N-00514 PDA WXS tumor CPT0077930007_1 CPT0077930007_1.WholeExome.RP-1303.bam 75675938375 BAM aligned CPTAC3 b5d9d686-d524-40b1-afcb-23fe4bf934c8 9c3f675f6d5c72f8072e0846767c5768 {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WXS.T C3N-00514 PDA WXS tumor CPT0077930007 CPT0077930007.WholeExome.RP-1303.bam 39374320935 BAM aligned CPTAC3 b4f4b2e0-0800-4dca-a8c9-5ee042a2d5f2 c9a9693b22254f0466e7fa519bc5dced {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WXS.T.hg38 C3N-00514 PDA WXS tumor CPT0077930007_1 20b71c93-a724-4d9a-8b99-2d86c1af4005_wxs_gdc_realn.bam 103274223036 BAM harmonized CPTAC3 88f44548-0551-494f-944b-0db95a5ced62 2153e0285726c1b0861b491200677d3e {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor"} -C3N-00514.WXS.T.hg38 C3N-00514 PDA WXS tumor CPT0077930007 3e109583-a3ce-4b0b-8b85-a92d038457f1_gdc_realn.bam 54123932174 BAM harmonized CPTAC3 8a3710ed-b54c-405e-91b3-cf8f299b0199 a63ed41eee6184906d6f346757a67bd3 {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor"} -C3N-00516.MethArray.Green.T C3N-00516 PDA Methylation_Array tumor CPT0078090007 202176290116_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d437fc1e-6a14-4c79-a477-7fa2ababac79 dd4e9bb8b5d490c45623d2e93bd15a3c {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor"} -C3N-00516.MethArray.Red.T C3N-00516 PDA Methylation_Array tumor CPT0078090007 202176290116_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 2290a280-e458-437a-9a5b-1b9fdb89bf54 5e142182133ad95b3b5b6072705cce6f {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor"} -C3N-00516.miRNA-Seq.S42_L007_R1.T C3N-00516 PDA miRNA-Seq tumor CPT0078090010 181012_UNC32-K00270_0124_AH223CBBXY_CGTACG_S42_L007_R1_001.unaln.bam 241523360 BAM S42_L007_R1 unaligned CPTAC3 f53e9269-bd23-4eb1-9125-f0b9578d753d 639c8bafb5f7193869a412d1c0fbdaad {"aliquot_tag": "ALQ_35e64b83", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00516.miRNA-Seq.T.hg38 C3N-00516 PDA miRNA-Seq tumor CPT0078090010 421d7885-90fc-447d-92f9-5c8278ab5a7d_mirnaseq_gdc_realn.bam 265110152 BAM harmonized CPTAC3 b1ffcf57-3bff-4bca-b875-6de377cafe1a 7b14afd773f66d2865af0f85f4f4fef4 {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor"} -C3N-00516.RNA-Seq.chimeric.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.chimeric.gdc_realn.bam 55459964 BAM chimeric harmonized CPTAC3 20ee604d-de3d-420f-9384-72cdf43f6144 93f14c3b965e4873f648c11126b7f57b {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor"} -C3N-00516.RNA-Seq.genomic.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.genomic.gdc_realn.bam 8833396423 BAM genomic harmonized CPTAC3 6245f251-1909-44c7-920a-22675fbf65c9 de4a008a06cbf820b49f31d989a0a20d {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor"} -C3N-00516.RNA-Seq.S3_L007_R1.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R1_001.fastq.gz 4149193620 FASTQ S3_L007_R1 unaligned CPTAC3 35098502-bf68-4845-88f6-4feee3e88f25 0391b6120bf27798285a396c528f3ea9 {"aliquot_tag": "ALQ_35e64b83", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00516.RNA-Seq.S3_L007_R2.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R2_001.fastq.gz 4064678475 FASTQ S3_L007_R2 unaligned CPTAC3 9bf5bde9-e5b7-45e4-a538-be22e9514f38 8fafa6f92b5979c18d0cd02f4d53d567 {"aliquot_tag": "ALQ_35e64b83", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00516.RNA-Seq.transcriptome.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.transcriptome.gdc_realn.bam 10873307472 BAM transcriptome harmonized CPTAC3 0fe470b8-9abf-425f-8cdb-784a40039d1f 4c0c465f8cd0434aaf7189c961a1e98f {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WGS.N C3N-00516 PDA WGS blood_normal CPT0078150002 CPT0078150002.WholeGenome.RP-1303.bam 80982324338 BAM aligned CPTAC3 5560b2eb-9839-4007-97c3-0e4079748bfa 30f4ba659d6570711c0a8905019cd04e {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00516.WGS.N.hg38 C3N-00516 PDA WGS blood_normal CPT0078150002 2b86b6b9-96cf-4382-99a0-089499736b97_gdc_realn.bam 121111546034 BAM harmonized CPTAC3 5a8fe06d-fc16-4c58-bc99-b845d0d79683 9bd47a844deb8b1e5fdd974fdbb85050 {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00516.WGS.T C3N-00516 PDA WGS tumor CPT0078090007_1 CPT0078090007_1.WholeGenome.RP-1303.bam 142950976103 BAM aligned CPTAC3 e701c076-3ab6-41dc-818d-f8ab88abf5a8 b9404c71dea95dcd1498b6cb01ad24a1 {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WGS.T C3N-00516 PDA WGS tumor CPT0078090007 CPT0078090007.WholeGenome.RP-1303.bam 74969029268 BAM aligned CPTAC3 5648d662-ca6a-4dff-a5c2-21f7347151a1 35c9f142d82f035b322cdf917e45fc1b {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WGS.T.hg38 C3N-00516 PDA WGS tumor CPT0078090007 16ceed06-5bda-4064-a978-682cac3e8a85_gdc_realn.bam 112126056087 BAM harmonized CPTAC3 40656472-cbfa-4c7a-8df0-62634577c104 a8749a3c3092f1effc2b80366b50144c {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WGS.T.hg38 C3N-00516 PDA WGS tumor CPT0078090007_1 6ec43779-ec6c-4cc7-8e04-22f29a8ae7d4_wgs_gdc_realn.bam 210978769505 BAM harmonized CPTAC3 a8d5f4c6-cd6d-45bb-bc96-f1d63d9d29b4 11dac54f2319e97984691cebd8b4a011 {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WXS.N C3N-00516 PDA WXS blood_normal CPT0078150002 CPT0078150002.WholeExome.RP-1303.bam 34655029916 BAM aligned CPTAC3 41f3c605-8c76-4fa1-aa7a-ed81aa1b62b6 6eef167be98a148446b59d81592228b9 {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00516.WXS.N.hg38 C3N-00516 PDA WXS blood_normal CPT0078150002 2b86b6b9-96cf-4382-99a0-089499736b97_gdc_realn.bam 47083360469 BAM harmonized CPTAC3 91ad8111-5ddf-432a-b60d-9333497c495c 469d6472cf088b887302158fcc7f59e3 {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00516.WXS.T C3N-00516 PDA WXS tumor CPT0078090007_1 CPT0078090007_1.WholeExome.RP-1303.bam 54439544902 BAM aligned CPTAC3 30d518db-ee3e-4fa3-b709-7b3aba53c236 b9206b8eeeab966db824bde1745cf922 {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WXS.T C3N-00516 PDA WXS tumor CPT0078090007 CPT0078090007.WholeExome.RP-1303.bam 30182199966 BAM aligned CPTAC3 cfe865e0-da6e-41e5-bb4b-9637acedb796 300f8b463b3ec0320a40b5e1761d7fa9 {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WXS.T.hg38 C3N-00516 PDA WXS tumor CPT0078090007 16ceed06-5bda-4064-a978-682cac3e8a85_gdc_realn.bam 41698747445 BAM harmonized CPTAC3 2192d9aa-a261-4e48-a913-d7c05f05f1c3 ff95cbe66a526b6caa61aa236b9e0ba4 {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor"} -C3N-00516.WXS.T.hg38 C3N-00516 PDA WXS tumor CPT0078090007_1 6ec43779-ec6c-4cc7-8e04-22f29a8ae7d4_wxs_gdc_realn.bam 74954362269 BAM harmonized CPTAC3 7bcb4446-25fb-48f5-9080-008986cd0541 47c2e98dba75488c73da5767e1651cdc {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor"} -C3N-00517.MethArray.Green.A C3N-00517 PDA Methylation_Array tissue_normal CPT0093880006 203561620043_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 f465b113-d977-45f2-8de7-2b2ad2e50f75 f5e34a825dc36ad65617104bd82a3fdb {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.MethArray.Green.T C3N-00517 PDA Methylation_Array tumor CPT0093860009 202234360009_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f202313a-bbeb-49cc-8fcb-82313c3df5ea c531b88b591e1c3c2324c64d88e6e25b {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor"} -C3N-00517.MethArray.Red.A C3N-00517 PDA Methylation_Array tissue_normal CPT0093880006 203561620043_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 4070fd0c-d73e-4742-97d9-3b350738e75b c4bcbb16a136d86a96ff8b20dd58cc21 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.MethArray.Red.T C3N-00517 PDA Methylation_Array tumor CPT0093860009 202234360009_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 a1a4ce85-35bd-407f-8b45-047dd2d9a67e fa14041b6f478abf44dd39a2f6954dcb {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor"} -C3N-00517.miRNA-Seq.A.hg38 C3N-00517 PDA miRNA-Seq tissue_normal CPT0093880009 978d28a0-2466-42ae-96b7-795b459030f2_mirnaseq_gdc_realn.bam 272411297 BAM harmonized CPTAC3 49b359f3-969a-4b87-871f-c58d73ccde82 ba0ad5eb1527d4dea9c4f0558215b396 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.miRNA-Seq.S24_L001_R1.A C3N-00517 PDA miRNA-Seq tissue_normal CPT0093880009 181108_UNC31-K00269_0162_AH255GBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 117612279 BAM S24_L001_R1 unaligned CPTAC3 e156f077-b1c4-45a7-b838-4b94d0b7921d d7df74fa2d669d3c3daf7b89e889cc8f {"aliquot_tag": "ALQ_939f2f73", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.miRNA-Seq.S24_L004_R1.A C3N-00517 PDA miRNA-Seq tissue_normal CPT0093880009 181119_UNC31-K00269_0165_AH27WCBBXY_TCGGCA_S24_L004_R1_001.unaln.bam 129517491 BAM S24_L004_R1 unaligned CPTAC3 1094ea67-0da9-4835-b5c2-d207e30d8a26 4ed6dbb281b6f6c5066f7bb2f10b3be1 {"aliquot_tag": "ALQ_939f2f73", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.miRNA-Seq.S27_L002_R1.T C3N-00517 PDA miRNA-Seq tumor CPT0093860006 181113_UNC31-K00269_0164_AH23NNBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 192757219 BAM S27_L002_R1 unaligned CPTAC3 402e58b6-cb7d-4bf1-b24a-fe71582d85d2 fae093ed70e14194856a7272ca075f6f {"aliquot_tag": "ALQ_bc108c83", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00517.miRNA-Seq.T.hg38 C3N-00517 PDA miRNA-Seq tumor CPT0093860006 b16295b7-fcd5-40e0-b34c-612cc7400014_mirnaseq_gdc_realn.bam 216051604 BAM harmonized CPTAC3 6daedcd3-9ac8-42cb-9adf-fc53291419c0 69f2633b72dfd692c823574a88a329a9 {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor"} -C3N-00517.RNA-Seq.chimeric.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.chimeric.gdc_realn.bam 77595538 BAM chimeric harmonized CPTAC3 7e44709a-5a86-492a-96cd-c9eefa66393f dca84a10a3fc0d96ed37a9fd8f922a22 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.RNA-Seq.chimeric.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.chimeric.gdc_realn.bam 29478317 BAM chimeric harmonized CPTAC3 a85dbc7c-c166-4a0b-b1e5-9b2ad8950469 568151fc497e06472e47400b784307e8 {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor"} -C3N-00517.RNA-Seq.genomic.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.genomic.gdc_realn.bam 11947885517 BAM genomic harmonized CPTAC3 8f139d30-d0d9-4e5c-84d3-803359644369 28fba244a92a5b5e49eb2fd5f338aea9 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.RNA-Seq.genomic.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.genomic.gdc_realn.bam 9160874747 BAM genomic harmonized CPTAC3 4f3c81cc-0c69-4cd3-bfaf-24f1fed8188e 03d80342653ed850c8131e8f17d42997 {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor"} -C3N-00517.RNA-Seq.S3_L008_R1.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R1_001.fastq.gz 5184677841 FASTQ S3_L008_R1 unaligned CPTAC3 ea90b038-9305-4f23-9741-7b84b8e529fa e2ad6268cb69a2a47ec5e6ca616953fd {"aliquot_tag": "ALQ_939f2f73", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.RNA-Seq.S3_L008_R2.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R2_001.fastq.gz 5537737885 FASTQ S3_L008_R2 unaligned CPTAC3 20b19fef-3565-4f4e-974c-cfff35111960 1bfd535642ccac9f9d981f0a27cd30bf {"aliquot_tag": "ALQ_939f2f73", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.RNA-Seq.S9_L003_R1.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3971725330 FASTQ S9_L003_R1 unaligned CPTAC3 6f1e129a-913a-46f8-b3a9-4e9dee4b2a79 b56a96813536d06d363256b98804c6fd {"aliquot_tag": "ALQ_bc108c83", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00517.RNA-Seq.S9_L003_R2.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4428184357 FASTQ S9_L003_R2 unaligned CPTAC3 70c40a42-439e-4c57-ad66-313287a12471 c3da0569aea560d54fdd166b31886755 {"aliquot_tag": "ALQ_bc108c83", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00517.RNA-Seq.transcriptome.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.transcriptome.gdc_realn.bam 14865549083 BAM transcriptome harmonized CPTAC3 43307932-396e-4c51-bbf7-768735c68344 c94eecec6f25ffd84c0eaebcf7078de5 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.RNA-Seq.transcriptome.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.transcriptome.gdc_realn.bam 11994160186 BAM transcriptome harmonized CPTAC3 e91fef83-7b46-48c5-8c1c-9d2e8f8d19bf 5ed8fcc5ae5135516fe5074d5c2b84ee {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor"} -C3N-00517.WGS.A C3N-00517 PDA WGS tissue_normal CPT0093880006 CPT0093880006.WholeGenome.RP-1303.bam 53603876211 BAM aligned CPTAC3 411cda6b-3462-4f81-939b-663c0fdae568 6a1564e98a8cf385e65eaca9b5052374 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.WGS.A.hg38 C3N-00517 PDA WGS tissue_normal CPT0093880006 46e6df78-f117-4074-bafd-5e6a607d0bdd_wgs_gdc_realn.bam 77004060588 BAM harmonized CPTAC3 01068fcf-8b0a-4d29-9cec-5dc04dab7cf2 6ab5cd96a321c8778d611c0b305c30b4 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.WGS.N C3N-00517 PDA WGS blood_normal CPT0093920002 CPT0093920002.WholeGenome.RP-1303.bam 66603024617 BAM aligned CPTAC3 e64d401f-681a-4b76-a20c-fe942a4e122b 2a7eb37f0054322b664c23dae07ac1b4 {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal"} -C3N-00517.WGS.N.hg38 C3N-00517 PDA WGS blood_normal CPT0093920002 bf94dd15-9042-4df8-baae-9f21c2b61a55_wgs_gdc_realn.bam 97056120225 BAM harmonized CPTAC3 a10dde40-6bb1-4202-b007-b0b45966aa7d b18abcdcbd8375ea8ab41f7b325683dc {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal"} -C3N-00517.WGS.T C3N-00517 PDA WGS tumor CPT0093860009 CPT0093860009.WholeGenome.RP-1303.bam 68012002781 BAM aligned CPTAC3 c6a7420c-641b-484c-a8cc-b0efa45ab688 b668d645d0abbd10d0b69f95780fda4b {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor"} -C3N-00517.WGS.T.hg38 C3N-00517 PDA WGS tumor CPT0093860009 55541171-4dc5-41f4-86b4-304106a81874_wgs_gdc_realn.bam 100960715783 BAM harmonized CPTAC3 dd21264d-41c3-4573-a7d8-5a2105527d67 c0f9f761017ad7228f7419911167bc10 {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor"} -C3N-00517.WXS.A C3N-00517 PDA WXS tissue_normal CPT0093880006 CPT0093880006.WholeExome.RP-1303.bam 32170384010 BAM aligned CPTAC3 011b685b-6ce9-4bf6-87b4-29183ba7ed3c 02831bf4253f5b71b112bb5bb2c0ea5b {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.WXS.A.hg38 C3N-00517 PDA WXS tissue_normal CPT0093880006 46e6df78-f117-4074-bafd-5e6a607d0bdd_wxs_gdc_realn.bam 43118203238 BAM harmonized CPTAC3 f5e1cbde-33b4-49b4-b930-01436a55c9fc 347cfa4c81639aa07f27f2f035e9a1c9 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00517.WXS.N C3N-00517 PDA WXS blood_normal CPT0093920002 CPT0093920002.WholeExome.RP-1303.bam 42783186736 BAM aligned CPTAC3 cdf866d8-41c5-4bbb-a5f3-a75fdfc45a5a 1931a5bd1bb81e47b5e3789ce1669cdf {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal"} -C3N-00517.WXS.N.hg38 C3N-00517 PDA WXS blood_normal CPT0093920002 bf94dd15-9042-4df8-baae-9f21c2b61a55_wxs_gdc_realn.bam 59608153667 BAM harmonized CPTAC3 ad83e926-2947-43b9-8bcb-df6f45be2656 ff3a5cd7dc3a2ca28a2ec7f82ed60c3a {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal"} -C3N-00517.WXS.T C3N-00517 PDA WXS tumor CPT0093860009_1 CPT0093860009_1.WholeExome.RP-1303.bam 69874566795 BAM aligned CPTAC3 3e9908d0-1273-4f76-a673-29eade5f724d ae5ba9ea636f932506a2aa4e97545a16 {"aliquot_tag": "ALQ_d2d8acf0", "gdc_sample_type": "Primary Tumor"} -C3N-00517.WXS.T C3N-00517 PDA WXS tumor CPT0093860009 CPT0093860009.WholeExome.RP-1303.bam 50906133783 BAM aligned CPTAC3 c532fe5e-d0ba-4b95-b563-86ae24254230 6a58ec56287b52f15147816ebc984b6b {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor"} -C3N-00517.WXS.T.hg38 C3N-00517 PDA WXS tumor CPT0093860009_1 65258cd6-b5b8-4ea3-98e5-d10ed48965e2_wxs_gdc_realn.bam 94467849061 BAM harmonized CPTAC3 a456ff07-170f-433e-9af3-02fcb188d71f c5b95df266be848d9e5119aa081cc529 {"aliquot_tag": "ALQ_d2d8acf0", "gdc_sample_type": "Primary Tumor"} -C3N-00517.WXS.T.hg38 C3N-00517 PDA WXS tumor CPT0093860009 55541171-4dc5-41f4-86b4-304106a81874_wxs_gdc_realn.bam 69072332479 BAM harmonized CPTAC3 e9f5a100-7ce5-4587-8c43-caaafaa3bb0a 782af9819af0fda5d33efe48428fa723 {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor"} -C3N-00518.ANN_c88ebd86.MethArray.Green.T C3N-00518 PDA Methylation_Array tumor CPT0078000006 202184990013_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3fc70e87-e4b9-4a5e-9c99-40c1b0ce68e0 1719150d77429ed54984c395406481b1 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00518.ANN_c88ebd86.MethArray.Red.T C3N-00518 PDA Methylation_Array tumor CPT0078000006 202184990013_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 5433d211-cdba-4bc4-8920-3bf116f96ede c94f3ec10eab78c2c5a8207291d0799c {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00518.ANN_c88ebd86.WGS.T C3N-00518 PDA WGS tumor CPT0078000006 CPT0078000006.WholeGenome.RP-1303.bam 65340221811 BAM aligned CPTAC3 6fdfcdbe-496b-4989-bc70-7b358cce1c77 f6b9eee0f55a7da1185751330cc82ae2 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00518.ANN_c88ebd86.WGS.T.hg38 C3N-00518 PDA WGS tumor CPT0078000006 f867efb9-cfd4-43af-a9b0-67283ae15049_gdc_realn.bam 100374622206 BAM harmonized CPTAC3 bc1311c5-ddc4-4c68-b21d-04d3bc213d6a f1783ee78e05757b167e8d6e18ba45b3 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00518.ANN_c88ebd86.WXS.T C3N-00518 PDA WXS tumor CPT0078000006 CPT0078000006.WholeExome.RP-1303.bam 26085859349 BAM aligned CPTAC3 73c90d6c-5923-4748-9130-f8916ed900fe c6a413ceb6f2bc3de0cc1084139bf217 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00518.ANN_c88ebd86.WXS.T.hg38 C3N-00518 PDA WXS tumor CPT0078000006 f867efb9-cfd4-43af-a9b0-67283ae15049_gdc_realn.bam 35951559226 BAM harmonized CPTAC3 25682ca6-5e20-4f25-a282-bd90c78caeb4 29e9bc6fcd162f20b3735eea12842316 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-00518.MethArray.Green.A C3N-00518 PDA Methylation_Array tissue_normal CPT0078030006 203561620089_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b5319b5a-bf49-49aa-958b-a46a09143b33 c6ea76e0dc029276395d59fb10bec8fe {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.MethArray.Red.A C3N-00518 PDA Methylation_Array tissue_normal CPT0078030006 203561620089_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 e6315c56-e1bc-4b9c-8177-aac92aaa80c7 92f53364f75553cbcfe20f986577fd40 {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.miRNA-Seq.A.hg38 C3N-00518 PDA miRNA-Seq tissue_normal CPT0078030009 5f424fd1-0570-4ee5-bd7a-fdd8530c1fa8_mirnaseq_gdc_realn.bam 335704654 BAM harmonized CPTAC3 82c3f8f3-4c46-4f43-bf20-0239eb2b724a ba930a4354c47be18aab38a402615c5f {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.miRNA-Seq.S13_L001_R1.A C3N-00518 PDA miRNA-Seq tissue_normal CPT0078030009 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 304258636 BAM S13_L001_R1 unaligned CPTAC3 4a725658-5042-4215-a1e4-9d1b69817b8f 14b4c0a7a0ce7206d2c67463f11c1e66 {"aliquot_tag": "ALQ_1f91dac7", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.miRNA-Seq.S41_L007_R1.T C3N-00518 PDA miRNA-Seq tumor CPT0078000009 181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L007_R1_001.unaln.bam 236317692 BAM S41_L007_R1 unaligned CPTAC3 c321e0e3-d990-4f65-93df-f2d31536e571 c3a798a33fb0ae6016a4108dadabe626 {"aliquot_tag": "ALQ_5831a017", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00518.miRNA-Seq.T.hg38 C3N-00518 PDA miRNA-Seq tumor CPT0078000009 e3075695-c9a6-45e8-a6dc-29e3b859e058_mirnaseq_gdc_realn.bam 259725187 BAM harmonized CPTAC3 e9c8747a-ea36-4cf6-a8a3-c1aa75cf4b40 878cedfdbf3db9509231f3dbd4e90a1f {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor"} -C3N-00518.RNA-Seq.chimeric.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.chimeric.gdc_realn.bam 114627217 BAM chimeric harmonized CPTAC3 7424fc1b-1274-4142-a8b3-0d15f271344b 016caca6be8a787439cbe53cf7363bad {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.RNA-Seq.chimeric.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.chimeric.gdc_realn.bam 78743077 BAM chimeric harmonized CPTAC3 248f5d5d-fe8e-4c51-98cf-9697a13a6a91 d3a07c0e2469858441ca074d25df2bbc {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor"} -C3N-00518.RNA-Seq.genomic.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.genomic.gdc_realn.bam 8444367367 BAM genomic harmonized CPTAC3 306e0789-ae4b-47f5-a374-94d6a18ee079 fa37595c5a1b99969b40ee0be7af7af6 {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.RNA-Seq.genomic.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.genomic.gdc_realn.bam 7289192414 BAM genomic harmonized CPTAC3 ff11beaa-559d-493f-bc91-fdf25384a587 fa9481beafd0c3d31af3fe415efe407b {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor"} -C3N-00518.RNA-Seq.S21_L006_R1.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3620007047 FASTQ S21_L006_R1 unaligned CPTAC3 2ea84b99-adc8-4c50-b4da-227d0bece1b8 4aa15ae81c1bef8d1d57c5268773e7c3 {"aliquot_tag": "ALQ_1f91dac7", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.RNA-Seq.S21_L006_R2.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4114925667 FASTQ S21_L006_R2 unaligned CPTAC3 323b48ec-2dc0-4123-9d9e-e23ea4446bd6 2eaeef1f15592bdae09104263093f507 {"aliquot_tag": "ALQ_1f91dac7", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.RNA-Seq.S7_L008_R1.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3602260099 FASTQ S7_L008_R1 unaligned CPTAC3 c69be997-c3ee-4a41-9b70-99adb1544886 c686751bb9111b511b655cdd8f38495d {"aliquot_tag": "ALQ_5831a017", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00518.RNA-Seq.S7_L008_R2.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4027405041 FASTQ S7_L008_R2 unaligned CPTAC3 499b9448-5a84-4417-a529-3683630e8bb8 7fac2352a483691a50fadae4d1560e47 {"aliquot_tag": "ALQ_5831a017", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00518.RNA-Seq.transcriptome.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.transcriptome.gdc_realn.bam 10037405038 BAM transcriptome harmonized CPTAC3 22177eae-11d1-458a-a327-83429e3b94bb 477dd032900c671984a5f4996a52da74 {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.RNA-Seq.transcriptome.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.transcriptome.gdc_realn.bam 10687676518 BAM transcriptome harmonized CPTAC3 92d1ec2b-e6d1-4f6f-a0ee-60887282b28d 5e9762f62a62e5eacabc3a0658c2d136 {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor"} -C3N-00518.WGS.A C3N-00518 PDA WGS tissue_normal CPT0078030006 CPT0078030006.WholeGenome.RP-1303.bam 60453231033 BAM aligned CPTAC3 60e1c344-88ba-4f77-a252-51c23f7591f0 d020537b6308dfac9f167791195cb4bc {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.WGS.A.hg38 C3N-00518 PDA WGS tissue_normal CPT0078030006 60b0ba11-f504-4ae3-b94e-244ab396a4db_wgs_gdc_realn.bam 90264460013 BAM harmonized CPTAC3 abdda472-8ba1-4f3d-84fb-635e28812934 1a07e83b8f2b8ef96ddc598f28d4c26d {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.WGS.N C3N-00518 PDA WGS blood_normal CPT0078080002 CPT0078080002.WholeGenome.RP-1303.bam 88738034527 BAM aligned CPTAC3 1cbecd11-5d2b-4d65-8141-7a80e87485e9 35939088665dc59d10af48815f08d8c7 {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00518.WGS.N.hg38 C3N-00518 PDA WGS blood_normal CPT0078080002 6216796a-b345-4f2d-9dc7-00b5f8c7421f_gdc_realn.bam 134316325766 BAM harmonized CPTAC3 552411a0-e179-49e9-a6d4-805dcc60ac50 8a8bc94b3fb2b6c9c18cfe2773dd5843 {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00518.WGS.T C3N-00518 PDA WGS tumor CPT0078000006_1 CPT0078000006_1.WholeGenome.RP-1303.bam 115252537444 BAM aligned CPTAC3 2f577b2e-29b4-499b-ae75-5a39ca5c5619 cbd3001a81779b82c7c9c2bf5bb4ed39 {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor"} -C3N-00518.WGS.T.hg38 C3N-00518 PDA WGS tumor CPT0078000006_1 1e927381-79c9-48a6-9325-ecd0670ec9ae_wgs_gdc_realn.bam 173194972801 BAM harmonized CPTAC3 270dbe03-6eb7-41ea-b89a-dcaaee2b9b6c 8910fa470ecd959d51a0ef3cb311df8c {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor"} -C3N-00518.WXS.A C3N-00518 PDA WXS tissue_normal CPT0078030006 CPT0078030006.WholeExome.RP-1303.bam 29631996940 BAM aligned CPTAC3 3a2a6c46-032b-435c-b165-c03da571366f f31969e9b9fc177d8d146554a22d1927 {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.WXS.A.hg38 C3N-00518 PDA WXS tissue_normal CPT0078030006 60b0ba11-f504-4ae3-b94e-244ab396a4db_wxs_gdc_realn.bam 39607136205 BAM harmonized CPTAC3 c57bfc41-cd30-4ec5-ad86-2952dac16982 8a22197a76bfe007fcf1af5fc8960c92 {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00518.WXS.N C3N-00518 PDA WXS blood_normal CPT0078080002 CPT0078080002.WholeExome.RP-1303.bam 33028195704 BAM aligned CPTAC3 1f8dcdcc-6bb9-4286-b5a9-feb3fc1f7dbe 416882ba550148dc1a776dffb6a223de {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00518.WXS.N.hg38 C3N-00518 PDA WXS blood_normal CPT0078080002 6216796a-b345-4f2d-9dc7-00b5f8c7421f_gdc_realn.bam 44485434620 BAM harmonized CPTAC3 6efb82ce-82d0-4192-93e2-ba51c3fc569f 6c36594e556f0e087a0c5909b27b5945 {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00518.WXS.T C3N-00518 PDA WXS tumor CPT0078000006_1 CPT0078000006_1.WholeExome.RP-1303.bam 53864250112 BAM aligned CPTAC3 1d123fcb-60ae-458a-badc-b3c9f134c5da e99fd47a9c8e9dfc79ae1f271050bc07 {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor"} -C3N-00518.WXS.T.hg38 C3N-00518 PDA WXS tumor CPT0078000006_1 1e927381-79c9-48a6-9325-ecd0670ec9ae_wxs_gdc_realn.bam 73940106948 BAM harmonized CPTAC3 c3a9d03c-16b7-4f1e-8fe6-04bd1fa6d2c7 f24204cb8b60e9616135874d1411f26f {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor"} -C3N-00519.MethArray.Green.T C3N-00519 HNSCC Methylation_Array tumor CPT0013430009 202184900140_R07C01_Grn.idat 13676262 IDAT Green NA CPTAC3 a5e6b201-3b4b-44f8-a4e2-5e1aac5a1ee0 e3027921aec03b3006348236f5049ddd {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor"} -C3N-00519.MethArray.Red.T C3N-00519 HNSCC Methylation_Array tumor CPT0013430009 202184900140_R07C01_Red.idat 13676262 IDAT Red NA CPTAC3 c3f978f9-8c08-4b0f-82f8-e9323400604d 6e795f28e84a411e12c09cdb289ca79a {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor"} -C3N-00519.miRNA-Seq.A.hg38 C3N-00519 HNSCC miRNA-Seq tissue_normal CPT0013460006 f6ac31fa-56d8-4c8b-a21b-8d7f5e538572_mirnaseq_gdc_realn.bam 271000948 BAM harmonized CPTAC3 e7260181-7cd1-4005-96a9-6e2058b60e02 6d3cdce3dc47b4b0d728f9ec10e2899d {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.miRNA-Seq.S31_L006_R1.A C3N-00519 HNSCC miRNA-Seq tissue_normal CPT0013460006 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L006_R1_001.unaln.bam 244554770 BAM S31_L006_R1 unaligned CPTAC3 4586ee57-2e75-408b-85d9-8fc2066e2e21 d402bb4f14882671384db3b40da6473f {"aliquot_tag": "ALQ_1837574d", "sample": "S31", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.miRNA-Seq.S39_L002_R1.T C3N-00519 HNSCC miRNA-Seq tumor CPT0013430006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACTCA_S39_L002_R1_001.unaln.bam 225044253 BAM S39_L002_R1 unaligned CPTAC3 6a100795-b15e-4fcc-b603-bdd01858ebdd 10ef4a09834eccd1845083ce283caa58 {"aliquot_tag": "ALQ_d0d7d83d", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00519.miRNA-Seq.T.hg38 C3N-00519 HNSCC miRNA-Seq tumor CPT0013430006 26621047-64ee-42cc-bcb4-3c1a24d6a18a_mirnaseq_gdc_realn.bam 247600753 BAM harmonized CPTAC3 30950800-0e23-419c-99eb-33b856bce5ac 61ef48f4376edb5aa2462ce20b63b8b1 {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor"} -C3N-00519.RNA-Seq.chimeric.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.chimeric.gdc_realn.bam 51557812 BAM chimeric harmonized CPTAC3 5607e145-e915-42bb-8ffc-f7f0c0eb2819 d8625bbb24518b78398104f868bc068a {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.RNA-Seq.chimeric.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.chimeric.gdc_realn.bam 68323515 BAM chimeric harmonized CPTAC3 b0385c30-095a-4f6c-9829-4e4dedde0eb1 0f907b3c5666cdaa4a595a324748bf84 {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor"} -C3N-00519.RNA-Seq.genomic.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.genomic.gdc_realn.bam 9200978632 BAM genomic harmonized CPTAC3 49e3438b-fdc5-4a56-9860-c12181f3c8c9 977a1e2609099f17ada1ed8e6d8b86dc {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.RNA-Seq.genomic.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.genomic.gdc_realn.bam 8624499176 BAM genomic harmonized CPTAC3 5add4e3d-51f1-4b8d-ab87-fb7ca415b0eb 5ea1e24dfedc5f8f77b6a16bf1a578ae {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor"} -C3N-00519.RNA-Seq.S1_L006_R1.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R1_001.fastq.gz 3643464970 FASTQ S1_L006_R1 unaligned CPTAC3 91119f86-7715-448f-a216-86049f310e09 a3c39cf2f33a20e88c884b57bc4f04ba {"aliquot_tag": "ALQ_d0d7d83d", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00519.RNA-Seq.S1_L006_R2.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R2_001.fastq.gz 3963654056 FASTQ S1_L006_R2 unaligned CPTAC3 2ba9a60e-eaaf-4990-a898-93a2e89a26e0 497a5f75d83728bc1262d2c2af5daf5b {"aliquot_tag": "ALQ_d0d7d83d", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00519.RNA-Seq.S21_L006_R1.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3914610227 FASTQ S21_L006_R1 unaligned CPTAC3 e23083b2-997d-4130-bf75-ec1d9b40c2a8 bafe9572ce8d844ccf4c61deb3527388 {"aliquot_tag": "ALQ_1837574d", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.RNA-Seq.S21_L006_R2.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4340903009 FASTQ S21_L006_R2 unaligned CPTAC3 5753e09e-61b7-4b19-be07-0f61808de354 caea4f68a7e70d0f82328eea22eb199d {"aliquot_tag": "ALQ_1837574d", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.RNA-Seq.transcriptome.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.transcriptome.gdc_realn.bam 11637410107 BAM transcriptome harmonized CPTAC3 2b22bcbe-9b7a-4f5d-b285-e24b227ccbd0 3b0b0ad425727de59626533a5e0f6c33 {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.RNA-Seq.transcriptome.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.transcriptome.gdc_realn.bam 10327832799 BAM transcriptome harmonized CPTAC3 f2c11415-494c-4ee2-bcf2-978314639de9 43c19f928dead569cf8595bba0294824 {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor"} -C3N-00519.WGS.A C3N-00519 HNSCC WGS tissue_normal CPT0013460009 CPT0013460009.WholeGenome.RP-1303.bam 68551414250 BAM aligned CPTAC3 a2f43ae3-3c0e-4168-91ec-b32a98f3ed40 0e6f113ce81a4fe0bd86bf4ceb68f8f9 {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.WGS.A.hg38 C3N-00519 HNSCC WGS tissue_normal CPT0013460009 7dc7bef4-5a1d-4370-869a-acfcd70b05ac_wgs_gdc_realn.bam 99817110532 BAM harmonized CPTAC3 2c77c221-abf2-48fa-9c9b-f15da976a979 15aa8c4e379a0a41e088d46941d3b98c {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.WGS.N C3N-00519 HNSCC WGS blood_normal CPT0013520002 CPT0013520002.WholeGenome.RP-1303.bam 71123514245 BAM aligned CPTAC3 121b4e1b-598a-4934-924b-f7af5651b132 dbf62e39f0e45549761d6f631f3cee53 {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal"} -C3N-00519.WGS.N.hg38 C3N-00519 HNSCC WGS blood_normal CPT0013520002 f7713c0e-dc58-4cb2-bb49-f249a4eb451a_gdc_realn.bam 110896567824 BAM harmonized CPTAC3 0b429d57-27e4-4d01-ac24-d30c1642a47b 42ffcf00cde3ebdeabea97977e4a631e {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal"} -C3N-00519.WGS.T C3N-00519 HNSCC WGS tumor CPT0013430009 CPT0013430009.WholeGenome.RP-1303.bam 73410557448 BAM aligned CPTAC3 322e41ff-2bfc-4d61-bf01-b2687c20b34c ec280530d4dc304c672320989d3785c3 {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor"} -C3N-00519.WGS.T.hg38 C3N-00519 HNSCC WGS tumor CPT0013430009 b2f47f5d-2722-4065-a554-c67264a3b7af_gdc_realn.bam 108491669742 BAM harmonized CPTAC3 d412f948-a64b-4eba-a0a5-0db8fdd6c8ed d2e724eb84eb3b261602f5f540670041 {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor"} -C3N-00519.WXS.A C3N-00519 HNSCC WXS tissue_normal CPT0013460009 CPT0013460009.WholeExome.RP-1303.bam 28140966091 BAM aligned CPTAC3 1b1b3975-af99-4c0c-b4a3-1c3edd4a014b 84977987ec85fa32faa5c33689ff53ce {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.WXS.A.hg38 C3N-00519 HNSCC WXS tissue_normal CPT0013460009 7dc7bef4-5a1d-4370-869a-acfcd70b05ac_wxs_gdc_realn.bam 37330572957 BAM harmonized CPTAC3 d12e1aab-df96-4867-a4bd-7358c2250252 078005680638d4e91176abb358a9cba3 {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00519.WXS.N C3N-00519 HNSCC WXS blood_normal CPT0013520002 CPT0013520002.WholeExome.RP-1303.bam 27310851064 BAM aligned CPTAC3 d5d16d88-9499-4535-8181-32a362f4b32a c1faf5298056e2c72b80e3e56208cc70 {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal"} -C3N-00519.WXS.N.hg38 C3N-00519 HNSCC WXS blood_normal CPT0013520002 f7713c0e-dc58-4cb2-bb49-f249a4eb451a_gdc_realn.bam 37138045212 BAM harmonized CPTAC3 0c6a1da0-3bab-402c-9b78-6b51ba514451 b4ea9dad20fd22bd9b6ba60277707200 {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal"} -C3N-00519.WXS.T C3N-00519 HNSCC WXS tumor CPT0013430009 CPT0013430009.WholeExome.RP-1303.bam 30227562466 BAM aligned CPTAC3 67ff1bce-0a8a-464b-ba49-77281a53cfb1 c393dc7bff72dddf9c0551ebfc946146 {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor"} -C3N-00519.WXS.T.hg38 C3N-00519 HNSCC WXS tumor CPT0013430009 b2f47f5d-2722-4065-a554-c67264a3b7af_gdc_realn.bam 41582755992 BAM harmonized CPTAC3 a8b606e8-ca56-425b-9df4-7266dfb54a36 36b77364525e6264709bac12bedc8f2a {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor"} -C3N-00520.MethArray.Green.T C3N-00520 UCEC Methylation_Array tumor CPT0115000007 203219670122_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 58ee1695-1e8f-4578-a9ad-7cf514a2455c 3090e0e2803ad608487e166a127cfba3 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor"} -C3N-00520.MethArray.Red.T C3N-00520 UCEC Methylation_Array tumor CPT0115000007 203219670122_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 defd5536-cedb-49f6-a427-ee3ba4bfe090 f9e470f848c373331a33fcb8617670f5 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor"} -C3N-00520.miRNA-Seq.A.hg38 C3N-00520 UCEC miRNA-Seq tissue_normal CPT0115040009 8254907f-96f2-46dd-82b5-8e601d60dbb0_mirnaseq_gdc_realn.bam 237641113 BAM harmonized CPTAC3 0c1ae3a2-e3c0-4a96-98c5-18031599638e ecd083521bcb13916ca89a22cb33640e {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.miRNA-Seq.S41_L003_R1.A C3N-00520 UCEC miRNA-Seq tissue_normal CPT0115040009 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L003_R1_001.unaln.bam 211499158 BAM S41_L003_R1 unaligned CPTAC3 134eec76-40ad-4b86-a71c-fcfd74bb1f87 3480c243a4fccd3d3062fea745d4722a {"aliquot_tag": "ALQ_1d727ad3", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.miRNA-Seq.S41_L003_R1.T C3N-00520 UCEC miRNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0176_AHYGLVBBXX_GACGAC_S41_L003_R1_001.unaln.bam 225524250 BAM S41_L003_R1 unaligned CPTAC3 bfa8f9d4-6562-4af1-9681-0abfee3adbcc d0dda17010b66cad980dc0282d723da1 {"aliquot_tag": "ALQ_883555f6", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00520.miRNA-Seq.T.hg38 C3N-00520 UCEC miRNA-Seq tumor CPT0115000010 a9c2d09a-55b7-462d-823d-ecc961c9b21f_mirnaseq_gdc_realn.bam 246197719 BAM harmonized CPTAC3 e1c992dd-cd83-4253-97f9-0b536c9bf5a7 b551f730d22310469b51e8911e815db4 {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.chimeric.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.chimeric.gdc_realn.bam 43600116 BAM chimeric harmonized CPTAC3 5c847937-89f3-4d3a-bf01-af2762f125a8 f4f82ebc67d462649e711f09682b6a18 {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.RNA-Seq.chimeric.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.chimeric.gdc_realn.bam 32119133 BAM chimeric harmonized CPTAC3 1920f28c-06d3-4293-b1b6-e5cae999f9c0 53a9bf3b1efdf901f902a66cbdd1ef3c {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.chimeric.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.chimeric.gdc_realn.bam 181838447 BAM chimeric harmonized CPTAC3 5734a3db-be94-45be-8545-6a2503fab522 0147f3be5b22a42fbd497185ca9876c0 {"aliquot_tag": "ALQ_c29c653c", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.genomic.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.genomic.gdc_realn.bam 10128541442 BAM genomic harmonized CPTAC3 e86bbc57-2ded-48fb-b195-d9017ccd9bfe d22c3299f41be8d0e86a458bb1576fc4 {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.RNA-Seq.genomic.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.genomic.gdc_realn.bam 9513087321 BAM genomic harmonized CPTAC3 c250644d-5e2c-40fc-8510-1a9f6557d836 6c9aa06a593265816c8d8c8c6b6f78ba {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.genomic.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.genomic.gdc_realn.bam 10003348786 BAM genomic harmonized CPTAC3 83b5a606-6e22-4757-a728-a6b4451fb1bb 7cfef2d6483593b63df8711239f61d05 {"aliquot_tag": "ALQ_c29c653c", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.S16_L006_R1.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R1_001.fastq.gz 4335911078 FASTQ S16_L006_R1 unaligned CPTAC3 b44c72d4-31f1-45ed-94f8-79ab011238ec 7bdf34282f9e8ce755d5688f2b5cf00f {"aliquot_tag": "ALQ_1d727ad3", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.RNA-Seq.S16_L006_R2.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R2_001.fastq.gz 4882238317 FASTQ S16_L006_R2 unaligned CPTAC3 c363744e-8286-4bfb-a810-158ac546af31 db4d48a2ed1db010d8d45f783c77a699 {"aliquot_tag": "ALQ_1d727ad3", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.RNA-Seq.S23_L008_R1.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R1_001.fastq.gz 3941067625 FASTQ S23_L008_R1 unaligned CPTAC3 37f04704-d9e0-4728-9466-38d72703f0bb 77387cb74a65e5931c7faea45a028c8a {"aliquot_tag": "ALQ_883555f6", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.S23_L008_R2.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R2_001.fastq.gz 4134888240 FASTQ S23_L008_R2 unaligned CPTAC3 64f7d7f3-03a1-4159-88c6-9443080e391f 98d56108650b71f88cd0d2e9ac1c9cb2 {"aliquot_tag": "ALQ_883555f6", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.S96_R1.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R1_001.fastq.gz 7325829920 FASTQ S96_R1 unaligned CPTAC3 3d566221-5aa7-4ad5-ae97-42115975a08e 39fd46cd6371472208d03718fc28da96 {"aliquot_tag": "ALQ_c29c653c", "sample": "S96", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.S96_R2.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R2_001.fastq.gz 7575110561 FASTQ S96_R2 unaligned CPTAC3 6b9bcc54-d829-41ad-97ef-4f5545c0f7f2 5aa21c829fe4c811bf1d579a7c2ffb7e {"aliquot_tag": "ALQ_c29c653c", "sample": "S96", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.transcriptome.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.transcriptome.gdc_realn.bam 10759913534 BAM transcriptome harmonized CPTAC3 7ddf76b7-6141-4a36-b8d5-1d1b872c6f06 6f7848eac67b7698c8b184a54ec09605 {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.RNA-Seq.transcriptome.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.transcriptome.gdc_realn.bam 8958026332 BAM transcriptome harmonized CPTAC3 d05af09a-1bc8-4ccb-9a07-97c87377f7f3 0c3ea638ed90fc4983ccbdf1345ba063 {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor"} -C3N-00520.RNA-Seq.transcriptome.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.transcriptome.gdc_realn.bam 5891228158 BAM transcriptome harmonized CPTAC3 6b68649d-2a0c-460d-b00f-618fc343432a 11ce11ba3a64bf4b9e22f8ff56ca336d {"aliquot_tag": "ALQ_c29c653c", "gdc_sample_type": "Primary Tumor"} -C3N-00520.WGS.N C3N-00520 UCEC WGS blood_normal CPT0116000002 CPT0116000002.WholeGenome.RP-1303.bam 59370999097 BAM aligned CPTAC3 d92ac087-781b-4ac4-a557-1f23be743851 1ae0c7ff592f2145c589b133fe5ee89c {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal"} -C3N-00520.WGS.N.hg38 C3N-00520 UCEC WGS blood_normal CPT0116000002 cafab02f-1ebc-45de-90d8-abbea5891cb4_wgs_gdc_realn.bam 87069186616 BAM harmonized CPTAC3 b29b2b55-a510-484a-b34c-9747309d8351 81721c59563a157edc722461ccd0ae4a {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal"} -C3N-00520.WGS.T C3N-00520 UCEC WGS tumor CPT0115000007 CPT0115000007.WholeGenome.RP-1303.bam 60322398741 BAM aligned CPTAC3 6bc9e6f2-0b26-439b-aa45-a2122244a79d 0737365dcbda6498d2d77877162c95f9 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor"} -C3N-00520.WGS.T.hg38 C3N-00520 UCEC WGS tumor CPT0115000007 77583640-4c16-464b-91a6-64ff04fa1421_wgs_gdc_realn.bam 87304983892 BAM harmonized CPTAC3 bd49bf77-f31b-4a9a-acfc-fa5a89f05ec8 0b439a583a50d0e636ff15f8dc122df5 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor"} -C3N-00520.WXS.A C3N-00520 UCEC WXS tissue_normal CPT0115040006 CPT0115040006.WholeExome.RP-1303.bam 17177744481 BAM aligned CPTAC3 96b308a4-9d03-4728-a53e-6c17653f8ae3 f618c56dfb94598a063ec520f26381d7 {"aliquot_tag": "ALQ_8dcd6742", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.WXS.A.hg38 C3N-00520 UCEC WXS tissue_normal CPT0115040006 8f5b07e2-f211-43f2-a1f0-668a7adfe884_wxs_gdc_realn.bam 23598314549 BAM harmonized CPTAC3 4c4c05c7-f223-4f9d-9e05-2a6ed86b6772 9171eb90c58c6e65c175550411e8a1f6 {"aliquot_tag": "ALQ_8dcd6742", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00520.WXS.N C3N-00520 UCEC WXS blood_normal CPT0116000002 CPT0116000002.WholeExome.RP-1303.bam 29022244601 BAM aligned CPTAC3 7adf354a-56f9-40db-ad4e-b2827a92832f b96cf687aab393575029a29a7bf8a11d {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal"} -C3N-00520.WXS.N.hg38 C3N-00520 UCEC WXS blood_normal CPT0116000002 cafab02f-1ebc-45de-90d8-abbea5891cb4_wxs_gdc_realn.bam 40629885612 BAM harmonized CPTAC3 2018ed32-76f5-4008-85f0-de8e0cbd6a81 0ebda4f60beae3d4fd238214fb28b57c {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal"} -C3N-00520.WXS.T C3N-00520 UCEC WXS tumor CPT0115000007 CPT0115000007.WholeExome.RP-1303.bam 26177036245 BAM aligned CPTAC3 ad48d7c8-3102-4d2c-a2d2-3ade585b7d08 f6286ca9cf009010ceebb0385f37d49e {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor"} -C3N-00520.WXS.T.hg38 C3N-00520 UCEC WXS tumor CPT0115000007 77583640-4c16-464b-91a6-64ff04fa1421_wxs_gdc_realn.bam 35601090265 BAM harmonized CPTAC3 6174bc64-77fb-48be-bd26-51d910ff182e 6cb2e4df8da683c7af5a227e4cdc799a {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor"} -C3N-00545.MethArray.Green.A C3N-00545 LUAD Methylation_Array tissue_normal CPT0066930008 203027390091_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9c4ff73b-381b-4beb-bc0a-d04e8475ed25 7d7bda3b700e982fc809ef8ccf073604 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.MethArray.Green.T C3N-00545 LUAD Methylation_Array tumor CPT0066890006 202184900140_R06C01_Grn.idat 13676261 IDAT Green NA CPTAC3 28adc625-622b-45eb-960c-899de7a8a562 e53f4a730203167051e4f2edfe5f119e {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor"} -C3N-00545.MethArray.Red.A C3N-00545 LUAD Methylation_Array tissue_normal CPT0066930008 203027390091_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 184617f4-d4b5-4c90-85dc-47465e4b7085 3df42d9d4bd9521fab0d99b404ee2c53 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.MethArray.Red.T C3N-00545 LUAD Methylation_Array tumor CPT0066890006 202184900140_R06C01_Red.idat 13676261 IDAT Red NA CPTAC3 be802bb5-106a-4330-a223-4d5cca22286f f2531feb98784d11373a5de29c3709f2 {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor"} -C3N-00545.miRNA-Seq.A.hg38 C3N-00545 LUAD miRNA-Seq tissue_normal CPT0066930005 9bee9add-07d8-4c2e-87d5-71e39edbaac4_mirnaseq_gdc_realn.bam 363849933 BAM harmonized CPTAC3 97df9379-5cc6-4474-9b1a-500daa97c65e bb49eaf168aed6485dc9d56d509e8bd5 {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.miRNA-Seq.S35_L008_R1.A C3N-00545 LUAD miRNA-Seq tissue_normal CPT0066930005 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L008_R1_001.unaln.bam 340074823 BAM S35_L008_R1 unaligned CPTAC3 46632a8c-d298-443e-9958-5b7c9b910d38 6733a4cf7dc97c09034c8a85bbdcbec2 {"aliquot_tag": "ALQ_adbdbce7", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.REP_4e74be3d.MethArray.Green.T C3N-00545 LUAD Methylation_Array tumor CPT0066910006 203027390078_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d4a5d913-2c3b-443d-b695-34039ceaa4a0 c11ba7c54a3315ef6a8e344d44bb0c5c {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_4e74be3d.MethArray.Red.T C3N-00545 LUAD Methylation_Array tumor CPT0066910006 203027390078_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 16e8bf55-f2ab-4c7e-aef7-fcd2cc770a34 c9757e0e1899c101f1cbd4252cbbaf4b {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_4e74be3d.WGS.T C3N-00545 LUAD WGS tumor CPT0066910006 CPT0066910006.WholeGenome.RP-1303.bam 61178169313 BAM aligned CPTAC3 10b76e66-821d-4210-9500-ad805ce01c7b eb832e3707c594f7043992e12007d448 {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_4e74be3d.WGS.T.hg38 C3N-00545 LUAD WGS tumor CPT0066910006 db37ef3d-5f8d-47c4-9f46-2ecafb8ee37b_wgs_gdc_realn.bam 89133915757 BAM harmonized CPTAC3 d172360d-5cd4-483a-bc9e-ec9306374fc6 921e9df8a3d0580ce13d2ea5156a9ea3 {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_4e74be3d.WXS.T C3N-00545 LUAD WXS tumor CPT0066910006 CPT0066910006.WholeExome.RP-1303.bam 41051144434 BAM aligned CPTAC3 a3d38eee-803f-4ef7-b9a5-12313467a136 654fa7b05cc3ba9140c45a030a395e7e {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_4e74be3d.WXS.T.hg38 C3N-00545 LUAD WXS tumor CPT0066910006 db37ef3d-5f8d-47c4-9f46-2ecafb8ee37b_wxs_gdc_realn.bam 56785034773 BAM harmonized CPTAC3 0336e36c-8b35-4d98-a5d8-087891d1e750 98f8253453f5b0d42de3eb526f0b5eec {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_decba3ac.miRNA-Seq.S9_L005_R1.T C3N-00545 LUAD miRNA-Seq tumor CPT0066910009 181113_UNC31-K00269_0164_AH23NNBBXY_CAGGCG_S9_L005_R1_001.unaln.bam 223125879 BAM S9_L005_R1 unaligned CPTAC3 c0690cda-cbfa-4206-826d-9c91903e4802 da2fea56547310536f7825f7b499025f {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_decba3ac.miRNA-Seq.T.hg38 C3N-00545 LUAD miRNA-Seq tumor CPT0066910009 c5457d01-f4f0-446a-a62d-a2e5703f3d92_mirnaseq_gdc_realn.bam 245915407 BAM harmonized CPTAC3 e30b037c-51be-4be5-977c-960f65b3c731 f90d1af845af876f26c81cb2bfa2d768 {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_decba3ac.RNA-Seq.chimeric.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.chimeric.gdc_realn.bam 27556640 BAM chimeric harmonized CPTAC3 a675301c-f067-4342-a1ba-cfa93c9abf6e a76b295b4a795894457990c07d9cec86 {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_decba3ac.RNA-Seq.genomic.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.genomic.gdc_realn.bam 7224136868 BAM genomic harmonized CPTAC3 b5c06561-24f7-46ac-a3bf-f4b376b6ac2e c900f242123d94fcc1364068f6f6e0dd {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_decba3ac.RNA-Seq.S24_L007_R1.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R1_001.fastq.gz 3228816890 FASTQ S24_L007_R1 unaligned CPTAC3 5c4d34ea-977b-4477-84c4-c72a1d817f6a a011f254f1554ce8c8912d163760c3ce {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_decba3ac.RNA-Seq.S24_L007_R2.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R2_001.fastq.gz 3442853503 FASTQ S24_L007_R2 unaligned CPTAC3 a3c1384f-8fc8-4a06-a292-673a478da5e7 4b370165806afe30a15e0a5d156879de {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00545.REP_decba3ac.RNA-Seq.transcriptome.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.transcriptome.gdc_realn.bam 9365875572 BAM transcriptome harmonized CPTAC3 76db6b1c-0071-45fe-bf17-f7a435d4b8fa 5e6a6f9ac89728d8c0b1b20ba4c56e0a {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-00545.RNA-Seq.chimeric.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.chimeric.gdc_realn.bam 73159545 BAM chimeric harmonized CPTAC3 c12ac8cd-dee0-4038-a0ec-976af154b012 a6ddb66c3d37970a3c264514f77eb404 {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.RNA-Seq.chimeric.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.chimeric.gdc_realn.bam 27223919 BAM chimeric harmonized CPTAC3 62283599-ec19-46e6-b259-52a38fd516fe 8d60920b4b7a5a5f7a1628a61a1bee2c {"aliquot_tag": "ALQ_25e73bc8", "gdc_sample_type": "Primary Tumor"} -C3N-00545.RNA-Seq.genomic.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.genomic.gdc_realn.bam 7241924520 BAM genomic harmonized CPTAC3 1e60692f-746f-4ea4-8885-6323946dca0b 7548605f955fd0d303c3b81bff2d8aae {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.RNA-Seq.genomic.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.genomic.gdc_realn.bam 8838318095 BAM genomic harmonized CPTAC3 5cb4b155-7fa9-4af1-930d-1f5c3dc1b494 744bd390bb03baed4e526abf04120292 {"aliquot_tag": "ALQ_25e73bc8", "gdc_sample_type": "Primary Tumor"} -C3N-00545.RNA-Seq.S4_L001_R1.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R1_001.fastq.gz 3481257854 FASTQ S4_L001_R1 unaligned CPTAC3 f8551601-ae62-4c3a-a6f9-54a5b61a7029 ba8c3c736a921eb009e60b63fb83f9a6 {"aliquot_tag": "ALQ_adbdbce7", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.RNA-Seq.S4_L001_R2.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R2_001.fastq.gz 4032403866 FASTQ S4_L001_R2 unaligned CPTAC3 77e85028-53b6-4157-95e0-90d9c9635e21 f79b55652e334c409c16a1eaab1c8e28 {"aliquot_tag": "ALQ_adbdbce7", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.RNA-Seq.S8_L002_R1.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 3750262051 FASTQ S8_L002_R1 unaligned CPTAC3 fd3861f3-4713-4c88-a4e4-2f67e02fe102 03182b661ba569883f666b0b13cf9483 {"aliquot_tag": "ALQ_25e73bc8", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00545.RNA-Seq.S8_L002_R2.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 4129280376 FASTQ S8_L002_R2 unaligned CPTAC3 a33cde2f-484a-49df-9cb3-2c0dd9d0f73c d2fce6f71c5026f9edd36fb78f602f48 {"aliquot_tag": "ALQ_25e73bc8", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00545.RNA-Seq.transcriptome.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.transcriptome.gdc_realn.bam 9155420440 BAM transcriptome harmonized CPTAC3 f4a8e20e-8d0e-4b84-ba25-471563258e6d 4f43acf6e57f6810dbaa692d0cbd67c5 {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.RNA-Seq.transcriptome.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.transcriptome.gdc_realn.bam 8982139098 BAM transcriptome harmonized CPTAC3 7942613a-c7ef-448e-a62c-994bcf263ea6 e6984d159a5dc4ad79e1e69361e2db12 {"aliquot_tag": "ALQ_25e73bc8", "gdc_sample_type": "Primary Tumor"} -C3N-00545.WGS.A C3N-00545 LUAD WGS tissue_normal CPT0066930008 CPT0066930008.WholeGenome.RP-1303.bam 54914703437 BAM aligned CPTAC3 8a494e7c-b8ee-4066-9feb-60844052a151 2341f57c1ebbbe10ba67217518a3cf66 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.WGS.A.hg38 C3N-00545 LUAD WGS tissue_normal CPT0066930008 5603a402-13d4-4f67-a990-303a0402b1e4_wgs_gdc_realn.bam 80913083769 BAM harmonized CPTAC3 769e8e66-a4ee-4bb2-9358-419d71e16dfc c323802d46a985a98b865d1b43081e48 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.WGS.N C3N-00545 LUAD WGS blood_normal CPT0067010002 CPT0067010002.WholeGenome.RP-1303.bam 87778078950 BAM aligned CPTAC3 0366f2dd-89cb-4611-b026-1bc4fa805bcb 46a1348ea813d1ca0fed7fcae7c17596 {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal"} -C3N-00545.WGS.N.hg38 C3N-00545 LUAD WGS blood_normal CPT0067010002 0ea25eb8-290a-4a16-a5db-b5b4c4be0e32_gdc_realn.bam 137891274230 BAM harmonized CPTAC3 95404d73-3b20-470a-b1ad-77c1f428b7fb 5bd35933a33427cd6942a3ffac51fcac {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal"} -C3N-00545.WGS.T C3N-00545 LUAD WGS tumor CPT0066890006 CPT0066890006.WholeGenome.RP-1303.bam 68357235084 BAM aligned CPTAC3 eb45281d-ba05-4621-bf17-28f400e395ca d12a3dd85ac9eed64570e8251a58ef6e {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor"} -C3N-00545.WGS.T.hg38 C3N-00545 LUAD WGS tumor CPT0066890006 28c2e390-63d5-49fc-8610-b16acd0f824c_gdc_realn.bam 102670797494 BAM harmonized CPTAC3 0e4539ba-3964-4888-81fe-e67e5b7afd45 70ece26fdbd5f5ead4ab0eb555c1792a {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor"} -C3N-00545.WXS.A C3N-00545 LUAD WXS tissue_normal CPT0066930008 CPT0066930008.WholeExome.RP-1303.bam 36577327908 BAM aligned CPTAC3 087c41a1-16b6-4fd6-9acd-bd1619e2ae50 5db3e7862aa5e3397bd5f4800c508d26 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.WXS.A.hg38 C3N-00545 LUAD WXS tissue_normal CPT0066930008 5603a402-13d4-4f67-a990-303a0402b1e4_wxs_gdc_realn.bam 48830181410 BAM harmonized CPTAC3 11f89b3c-a6c0-4c0d-80e6-6d2d55064985 74fc78110a9464cd14cf02c0693a0ec7 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00545.WXS.N C3N-00545 LUAD WXS blood_normal CPT0067010002 CPT0067010002.WholeExome.RP-1303.bam 24241653466 BAM aligned CPTAC3 8817e15e-5a69-4641-8c64-a66af6d3e356 157a82ce1673799e00e6d5d73e29d588 {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal"} -C3N-00545.WXS.N.hg38 C3N-00545 LUAD WXS blood_normal CPT0067010002 0ea25eb8-290a-4a16-a5db-b5b4c4be0e32_gdc_realn.bam 32774662433 BAM harmonized CPTAC3 2ac6cf26-7fa7-460f-a31e-3646f7b0f241 5d88238560b3c6b24b94de66e2226ae2 {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal"} -C3N-00545.WXS.T C3N-00545 LUAD WXS tumor CPT0066890006 CPT0066890006.WholeExome.RP-1303.bam 24089106965 BAM aligned CPTAC3 8f74b67f-e3e8-4f21-8fa3-88012ca240c0 2c41055ff8cc831c4bb6c6e55900719a {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor"} -C3N-00545.WXS.T.hg38 C3N-00545 LUAD WXS tumor CPT0066890006 28c2e390-63d5-49fc-8610-b16acd0f824c_gdc_realn.bam 33979983169 BAM harmonized CPTAC3 b594ed24-335e-44ba-8f8c-e317b5f85814 31af578174eed3dc28ed55a515e7cc4a {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor"} -C3N-00546.MethArray.Green.A C3N-00546 LUAD Methylation_Array tissue_normal CPT0067110009 203027390034_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a3d97d6d-d189-464f-bff9-e0ebdaccc35d a29f8cecc567030e2d2b847122d36b83 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.MethArray.Green.T C3N-00546 LUAD Methylation_Array tumor CPT0067070006 202184900105_R05C01_Grn.idat 13676223 IDAT Green NA CPTAC3 72ac824e-fcb0-4f7c-a16a-7c2c9f5f47b3 6cdf0001fb7382ab968d2e3ae04a7532 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor"} -C3N-00546.MethArray.Red.A C3N-00546 LUAD Methylation_Array tissue_normal CPT0067110009 203027390034_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 b4424c55-7db1-42de-a2b9-d8d9c39162c0 b8aea211e398b963f8a5a8da17e2f83f {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.MethArray.Red.T C3N-00546 LUAD Methylation_Array tumor CPT0067070006 202184900105_R05C01_Red.idat 13676223 IDAT Red NA CPTAC3 3427e91c-5a7d-4de6-afd1-71d0d96495bf ddf425e1d166eb425e945c6459ef8760 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor"} -C3N-00546.miRNA-Seq.A.hg38 C3N-00546 LUAD miRNA-Seq tissue_normal CPT0067110006 d16e57d7-bcf5-40c2-aceb-3d5de2856f65_mirnaseq_gdc_realn.bam 261313578 BAM harmonized CPTAC3 f542b3e7-7a23-4ec5-8f27-8c5a00b365e6 4bbc2baaaf56756a09d02260f1172a96 {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.miRNA-Seq.S16_L001_R1.T C3N-00546 LUAD miRNA-Seq tumor CPT0067070013 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L001_R1_001.unaln.bam 200781876 BAM S16_L001_R1 unaligned CPTAC3 d404ab17-3261-4264-96a2-89b8b86b06f0 0a7a56290ec81630ed8b8abdfffbf582 {"aliquot_tag": "ALQ_293dd42f", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00546.miRNA-Seq.S40_L008_R1.A C3N-00546 LUAD miRNA-Seq tissue_normal CPT0067110006 181108_UNC31-K00269_0162_AH255GBBXY_CCGTCC_S40_L008_R1_001.unaln.bam 237847698 BAM S40_L008_R1 unaligned CPTAC3 48da2265-64db-4145-a7f1-35d69e0b64d3 0490766830b045330d889d5832135eb6 {"aliquot_tag": "ALQ_45037e4", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.miRNA-Seq.T.hg38 C3N-00546 LUAD miRNA-Seq tumor CPT0067070013 b99e93f4-77da-4e87-918d-b9d7b6a7e39d_mirnaseq_gdc_realn.bam 220150389 BAM harmonized CPTAC3 a877f800-f1df-4c30-8804-49cef5005e8b 09d2342fa8ea8dcd25d9d348e310f152 {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor"} -C3N-00546.RNA-Seq.chimeric.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.chimeric.gdc_realn.bam 85645604 BAM chimeric harmonized CPTAC3 15ed702c-1e8a-4b1e-8804-7373c6bb86fc 10a01707c5a04f3f8beeab30348f3105 {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.RNA-Seq.chimeric.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.chimeric.gdc_realn.bam 60108586 BAM chimeric harmonized CPTAC3 764fe32e-855a-424d-964e-1d35e8aeb10d 0d0fd279cad0b2a673aadae0b43a035e {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor"} -C3N-00546.RNA-Seq.genomic.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.genomic.gdc_realn.bam 8966041867 BAM genomic harmonized CPTAC3 6930f967-1067-4d73-8601-236ac8838746 573ccc83cfdfab0fd1a80c0f0f215991 {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.RNA-Seq.genomic.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.genomic.gdc_realn.bam 9006241779 BAM genomic harmonized CPTAC3 27d157bb-1734-4852-b762-70839b1ea207 f20a6b51ff71621eb36f3a9a437527d5 {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor"} -C3N-00546.RNA-Seq.S81_L008_R1.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R1_001.fastq.gz 4553021601 FASTQ S81_L008_R1 unaligned CPTAC3 9355f328-7901-49ad-aa10-a44cdcc09b09 482f60e761f41d4cffeaf3ba2bdafa60 {"aliquot_tag": "ALQ_45037e4", "sample": "S81", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.RNA-Seq.S81_L008_R2.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R2_001.fastq.gz 4401394210 FASTQ S81_L008_R2 unaligned CPTAC3 57483e4e-e448-493d-8506-ba821aa4c877 6d3bea573da72b0d35e40ebd43063762 {"aliquot_tag": "ALQ_45037e4", "sample": "S81", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.RNA-Seq.S9_L003_R1.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4177294750 FASTQ S9_L003_R1 unaligned CPTAC3 a16e8643-3620-410b-bf65-f5585d84d6d9 05315c26746f9b83ebd2a065ebf187f2 {"aliquot_tag": "ALQ_293dd42f", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00546.RNA-Seq.S9_L003_R2.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4564872627 FASTQ S9_L003_R2 unaligned CPTAC3 346e852f-36d4-4a1c-ab55-3b44e213ba9b 71dedff291243474be94f8f891574693 {"aliquot_tag": "ALQ_293dd42f", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00546.RNA-Seq.transcriptome.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.transcriptome.gdc_realn.bam 10435092100 BAM transcriptome harmonized CPTAC3 c63e195d-1493-45b2-bc3e-c2a5139bb907 e70c151e67eca425fa8fe9292e00696d {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.RNA-Seq.transcriptome.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.transcriptome.gdc_realn.bam 10510554664 BAM transcriptome harmonized CPTAC3 db4b7c6c-bdce-433b-aa0e-67332f08ff73 7ee56f9a080c1d2a6d1ea8b6f4404fb2 {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor"} -C3N-00546.WGS.A C3N-00546 LUAD WGS tissue_normal CPT0067110009 CPT0067110009.WholeGenome.RP-1303.bam 67546955495 BAM aligned CPTAC3 4ea0c5a1-b031-42b2-a660-f9392d4ce4fd 1771b45afd4bed1eab178074707af5e7 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.WGS.A.hg38 C3N-00546 LUAD WGS tissue_normal CPT0067110009 e896e137-ed7c-4689-9780-769d67853f73_wgs_gdc_realn.bam 98052313255 BAM harmonized CPTAC3 3b695717-fc9b-4963-88c1-eac2aa0b6025 5296d10d43c3dacf6b39e5580073d19d {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.WGS.N C3N-00546 LUAD WGS blood_normal CPT0067190002 CPT0067190002.WholeGenome.RP-1303.bam 73784451163 BAM aligned CPTAC3 fb7f9e82-f7fe-4183-84e6-6b836d6f74d8 847030578fc305acc6bcd5d352d46838 {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00546.WGS.N.hg38 C3N-00546 LUAD WGS blood_normal CPT0067190002 2da0a12e-556f-4ed6-a626-831681da020e_gdc_realn.bam 111888101633 BAM harmonized CPTAC3 f5ab5a28-17d3-405c-b2ca-5945333bd155 d0ae940417454cb889fc3743e759ae8e {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00546.WGS.T C3N-00546 LUAD WGS tumor CPT0067070006 CPT0067070006.WholeGenome.RP-1303.bam 63816386536 BAM aligned CPTAC3 a351cbce-8dbc-4d01-b9ca-53afb7e21edc 9b2b10537d3887a96fb8a8198540f741 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor"} -C3N-00546.WGS.T.hg38 C3N-00546 LUAD WGS tumor CPT0067070006 1caecc54-634b-4108-90bd-d813bb5506dc_gdc_realn.bam 95249261919 BAM harmonized CPTAC3 8cf057e8-1e3e-4d0a-9ce1-ff673a2161fc 8e8d85cd801d1db8b74aff27cc33aa16 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor"} -C3N-00546.WXS.A C3N-00546 LUAD WXS tissue_normal CPT0067110009 CPT0067110009.WholeExome.RP-1303.bam 41214966771 BAM aligned CPTAC3 ce45ef95-633c-4609-900b-5c172da2f333 2d98d9a94c5534f11c0fc212753c1655 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.WXS.A.hg38 C3N-00546 LUAD WXS tissue_normal CPT0067110009 e896e137-ed7c-4689-9780-769d67853f73_wxs_gdc_realn.bam 56666508154 BAM harmonized CPTAC3 8142f8a1-1c5e-44d6-85bc-9fdc4d1a1bea bb8c19c43905867d3ac2a9d6f2fb2af4 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00546.WXS.N C3N-00546 LUAD WXS blood_normal CPT0067190002 CPT0067190002.WholeExome.RP-1303.bam 30578832873 BAM aligned CPTAC3 cfae9043-4bc7-4c12-ac5d-a33aed51cb90 a21c51ea375a035fa1dbf3cd8d290d58 {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00546.WXS.N.hg38 C3N-00546 LUAD WXS blood_normal CPT0067190002 2da0a12e-556f-4ed6-a626-831681da020e_gdc_realn.bam 40670117870 BAM harmonized CPTAC3 f25758fa-258a-4762-89a2-67e07e7ffde9 0de703d0194e7fffe7da61dc0c45399b {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00546.WXS.T C3N-00546 LUAD WXS tumor CPT0067070006 CPT0067070006.WholeExome.RP-1303.bam 34962021754 BAM aligned CPTAC3 74e3d551-8427-48ca-a2c0-faf285fbd80f ade820af753288d4bb113069e6842bf4 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor"} -C3N-00546.WXS.T.hg38 C3N-00546 LUAD WXS tumor CPT0067070006 1caecc54-634b-4108-90bd-d813bb5506dc_gdc_realn.bam 48207085485 BAM harmonized CPTAC3 82f8f2a4-2b3b-498d-8bcb-3879cbbcf8a8 3a69794e864f02370a28654ecf04c627 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor"} -C3N-00547.MethArray.Green.A C3N-00547 LUAD Methylation_Array tissue_normal CPT0067290009 203028200034_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0016a4e0-99a1-434b-ad6f-5e2b284112a6 196ef9812088bf53d062b3560b1ff150 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.MethArray.Green.T C3N-00547 LUAD Methylation_Array tumor CPT0067250006 202184990069_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5de13c5f-81ee-40b9-8e98-6690a59d8da1 77603321243c406f2ac37c590999b5af {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor"} -C3N-00547.MethArray.Red.A C3N-00547 LUAD Methylation_Array tissue_normal CPT0067290009 203028200034_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 cbeeb6ce-bbc6-445e-9987-bcf8ad8db5a6 c1ed7f3454f35c557875d1722975b999 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.MethArray.Red.T C3N-00547 LUAD Methylation_Array tumor CPT0067250006 202184990069_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 168734cb-4e84-4fef-9e9c-684135080250 5b4b764487c77ac33bc8fbdc99290e90 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor"} -C3N-00547.miRNA-Seq.A.hg38 C3N-00547 LUAD miRNA-Seq tissue_normal CPT0067290006 ed2a110d-9362-44e8-b380-2b4949818e27_mirnaseq_gdc_realn.bam 336168160 BAM harmonized CPTAC3 39c1d2fa-90c7-4382-9d4e-5e7bf5489216 ce4c8f53e13a778e0787cfc77ccb6745 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.miRNA-Seq.S2_L008_R1.T C3N-00547 LUAD miRNA-Seq tumor CPT0067250009 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L008_R1_001.unaln.bam 192988243 BAM S2_L008_R1 unaligned CPTAC3 647d9f8a-c628-4c69-ab1d-fc234078ae37 c486492c21c1aa563ae699450ee106b8 {"aliquot_tag": "ALQ_e7fbfe1b", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00547.miRNA-Seq.S41_L008_R1.A C3N-00547 LUAD miRNA-Seq tissue_normal CPT0067290006 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L008_R1_001.unaln.bam 308053951 BAM S41_L008_R1 unaligned CPTAC3 c6f605fc-6f81-4adc-8f15-15c3f7d37013 09a1dbf47c2d6e9fb2c320946e5b68ff {"aliquot_tag": "ALQ_b2b40e8b", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.miRNA-Seq.T.hg38 C3N-00547 LUAD miRNA-Seq tumor CPT0067250009 54b6ab73-6d58-4835-9069-3320fd8c5b67_mirnaseq_gdc_realn.bam 206476390 BAM harmonized CPTAC3 487f4d53-ae0d-4fbc-bda0-9ce2f75271c0 32271c59eddc984550fdfd9d99aad91f {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor"} -C3N-00547.RNA-Seq.chimeric.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.chimeric.gdc_realn.bam 61373654 BAM chimeric harmonized CPTAC3 30a8bd8a-40e4-485e-83d0-571970e9706d 2ec5945c2eeaa11ab2daaf5443709691 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.RNA-Seq.chimeric.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.chimeric.gdc_realn.bam 269108907 BAM chimeric harmonized CPTAC3 e11bb86b-4c2a-4619-9293-604f07ad0293 4218fe0b9b768f7a5a9b045226ed9c2b {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor"} -C3N-00547.RNA-Seq.genomic.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.genomic.gdc_realn.bam 8965603220 BAM genomic harmonized CPTAC3 51709e93-8717-476a-a90e-06ae3f4e1f34 a7d1c09855e8c82edb9a858714e04de0 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.RNA-Seq.genomic.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.genomic.gdc_realn.bam 8394780090 BAM genomic harmonized CPTAC3 b4c1a1d0-d192-4d73-9f2d-772ef85409a9 7487d86482b5575c2ec7e473be3a746a {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor"} -C3N-00547.RNA-Seq.S5_L008_R1.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3843449961 FASTQ S5_L008_R1 unaligned CPTAC3 6576483b-ff32-4d93-8aa7-ab69ab639ec2 97321e7dad011589dd3f6bb83282630e {"aliquot_tag": "ALQ_e7fbfe1b", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00547.RNA-Seq.S5_L008_R2.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3891032663 FASTQ S5_L008_R2 unaligned CPTAC3 b32a3c43-e786-4031-bb9a-226c301d9e99 a3868bda57b76cfe6abb045dab3c70a9 {"aliquot_tag": "ALQ_e7fbfe1b", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00547.RNA-Seq.S6_L008_R1.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R1_001.fastq.gz 3939937920 FASTQ S6_L008_R1 unaligned CPTAC3 70f7d271-ed8c-4937-86e8-9bee4c523a4f 571b75112d98a4c6cfd91fa48416464e {"aliquot_tag": "ALQ_b2b40e8b", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.RNA-Seq.S6_L008_R2.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R2_001.fastq.gz 4441187376 FASTQ S6_L008_R2 unaligned CPTAC3 cf65aa12-fe38-461f-ac85-607547d07c42 b929de83a2ec54e9fcae57693e558da1 {"aliquot_tag": "ALQ_b2b40e8b", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.RNA-Seq.transcriptome.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.transcriptome.gdc_realn.bam 9592262018 BAM transcriptome harmonized CPTAC3 8a88f6cd-32a9-43c6-9cc5-440b2527c1d2 6e6b3f79f22ae540f3f11ae8abac0a75 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.RNA-Seq.transcriptome.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.transcriptome.gdc_realn.bam 8336670302 BAM transcriptome harmonized CPTAC3 b5ecad11-8a96-416d-9a56-c0d0f98aafc6 98e7358ae4bc599255d4e5137f27c85a {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor"} -C3N-00547.WGS.A C3N-00547 LUAD WGS tissue_normal CPT0067290009 CPT0067290009.WholeGenome.RP-1303.bam 76205566754 BAM aligned CPTAC3 4685371b-f3ce-4c24-976e-35eea0e432fe e8b65e7f392cfe20ad363b7175894990 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.WGS.A.hg38 C3N-00547 LUAD WGS tissue_normal CPT0067290009 fac83b92-f4e8-4824-8bc5-e05a857bda61_wgs_gdc_realn.bam 110805374646 BAM harmonized CPTAC3 ace12421-3e17-477c-8325-cf7e3b296237 7015a567684c7b08974a0bb99416a3ae {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.WGS.N C3N-00547 LUAD WGS blood_normal CPT0067370002 CPT0067370002.WholeGenome.RP-1303.bam 63831924608 BAM aligned CPTAC3 7242057a-f94f-4352-b6ab-5c890c350c03 3ca47163b1981372b4ad00d89c0e06cd {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal"} -C3N-00547.WGS.N.hg38 C3N-00547 LUAD WGS blood_normal CPT0067370002 111fcdc8-3ab8-4064-b0ad-a0617700251e_gdc_realn.bam 95421149912 BAM harmonized CPTAC3 72cc93b3-91b8-4a4b-b55d-db09b5eaf6c9 3a601ffa1f45fc83c14bf7f88db50659 {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal"} -C3N-00547.WGS.T C3N-00547 LUAD WGS tumor CPT0067250006 CPT0067250006.WholeGenome.RP-1303.bam 83664701063 BAM aligned CPTAC3 2b89e19a-c413-4fe3-b69a-301e0c739667 fce9ec170beb04e36d32f7ded53365e7 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor"} -C3N-00547.WGS.T.hg38 C3N-00547 LUAD WGS tumor CPT0067250006 53288c31-b060-4d2d-b5c3-62cb54a0d74e_gdc_realn.bam 126452227155 BAM harmonized CPTAC3 b66592f6-ecb4-4495-ab33-c2b1ba2e97c7 a7ae6f68cf2d9fb8afa14c1fa6541517 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor"} -C3N-00547.WXS.A C3N-00547 LUAD WXS tissue_normal CPT0067290009 CPT0067290009.WholeExome.RP-1303.bam 44482750964 BAM aligned CPTAC3 8ee8e21e-8b16-428f-8854-2c5f59be6fd6 a9b114cbf5ea7d338e3b8bdf545889c8 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.WXS.A.hg38 C3N-00547 LUAD WXS tissue_normal CPT0067290009 fac83b92-f4e8-4824-8bc5-e05a857bda61_wxs_gdc_realn.bam 60391927344 BAM harmonized CPTAC3 d9d96aa6-20aa-43a7-9be0-375a053c1a05 8e40b708ed488df3b20444fda70f0de4 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00547.WXS.N C3N-00547 LUAD WXS blood_normal CPT0067370002 CPT0067370002.WholeExome.RP-1303.bam 29774238105 BAM aligned CPTAC3 d2446f56-dd21-43a4-98aa-16de72573097 00fe3676211f3cf7f8111dd143fce92c {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal"} -C3N-00547.WXS.N.hg38 C3N-00547 LUAD WXS blood_normal CPT0067370002 111fcdc8-3ab8-4064-b0ad-a0617700251e_gdc_realn.bam 40603003589 BAM harmonized CPTAC3 54499215-2538-46bc-ba16-f1ef797b7684 3f0306a4172b849e7612364bb47fb9f4 {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal"} -C3N-00547.WXS.T C3N-00547 LUAD WXS tumor CPT0067250006 CPT0067250006.WholeExome.RP-1303.bam 28078403882 BAM aligned CPTAC3 97c2c993-0268-46ba-af13-56f9d32834fc 51cdca46d3d0e57efc88953f75ad1242 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor"} -C3N-00547.WXS.T.hg38 C3N-00547 LUAD WXS tumor CPT0067250006 53288c31-b060-4d2d-b5c3-62cb54a0d74e_gdc_realn.bam 38397448142 BAM harmonized CPTAC3 93a36f05-aeff-4229-b681-345a78603fdd 4b58e67d16caa82a8dacba841f6a4512 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor"} -C3N-00549.MethArray.Green.A C3N-00549 LUAD Methylation_Array tissue_normal CPT0067470010 203027390028_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7c4b7d08-4c51-4c86-9e8b-f0bcd5163b9f d7a0fb0b96e5f4727d5add5799f91df2 {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.MethArray.Green.T C3N-00549 LUAD Methylation_Array tumor CPT0067450006 202176290095_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f01b0f0a-6c57-4f9c-8cab-8da145b7cb59 4673a2ea6e2d6eb87bd7edf2ba30fc4b {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor"} -C3N-00549.MethArray.Red.A C3N-00549 LUAD Methylation_Array tissue_normal CPT0067470010 203027390028_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 5f6a466c-32b7-4dd6-be52-773dce3103d1 f1b860610586ff8986813a792cb2bdfb {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.MethArray.Red.T C3N-00549 LUAD Methylation_Array tumor CPT0067450006 202176290095_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 0047fbc3-358d-4931-a6c4-94dd08e88751 9919cf67e6953e2bcd129fa9cb46a7c0 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor"} -C3N-00549.miRNA-Seq.A.hg38 C3N-00549 LUAD miRNA-Seq tissue_normal CPT0067470007 4c1ebb1f-0181-456e-a3dc-fe04ca17a030_mirnaseq_gdc_realn.bam 276744479 BAM harmonized CPTAC3 7208c561-0339-48d3-8478-ea19b02afc55 9c78e55ebf47efda4a0d2e023aa579c8 {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.miRNA-Seq.S16_L001_R1.T C3N-00549 LUAD miRNA-Seq tumor CPT0067450009 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L001_R1_001.unaln.bam 192253647 BAM S16_L001_R1 unaligned CPTAC3 8dc6eec7-8bb2-44eb-86f1-07d9f861dea0 19c3224a90f2cacd9a9482661279f324 {"aliquot_tag": "ALQ_31a21d06", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00549.miRNA-Seq.S42_L008_R1.A C3N-00549 LUAD miRNA-Seq tissue_normal CPT0067470007 181108_UNC31-K00269_0162_AH255GBBXY_GTCCGC_S42_L008_R1_001.unaln.bam 251877075 BAM S42_L008_R1 unaligned CPTAC3 ede01c26-3919-4dc9-9902-1ddb30e5e8a5 3a73c21a31fec6d9f45a0535ccc135ce {"aliquot_tag": "ALQ_acda6361", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.miRNA-Seq.T.hg38 C3N-00549 LUAD miRNA-Seq tumor CPT0067450009 16eaff14-a03a-4727-85b5-defc7b451f35_mirnaseq_gdc_realn.bam 209778933 BAM harmonized CPTAC3 f883a8ea-55ac-474d-9262-59c6fe4f9ac8 765598ef09c4898cc4063f46a287631c {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor"} -C3N-00549.RNA-Seq.chimeric.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.chimeric.gdc_realn.bam 81482578 BAM chimeric harmonized CPTAC3 c7005007-de72-4115-a477-6534eff4df99 ec35d4f8c3dbfd41392950d0e3e3bddd {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.RNA-Seq.chimeric.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.chimeric.gdc_realn.bam 30198238 BAM chimeric harmonized CPTAC3 5f11b440-ea2e-4736-801f-597782877140 1a8513703e23ab88bfbaad66e1f623bf {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor"} -C3N-00549.RNA-Seq.genomic.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.genomic.gdc_realn.bam 8503421614 BAM genomic harmonized CPTAC3 f25b1c0f-53d3-4814-8295-ad511d5ee1d4 ad1d1f0126aa385f629e588e15317931 {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.RNA-Seq.genomic.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.genomic.gdc_realn.bam 8194475146 BAM genomic harmonized CPTAC3 b3a3a081-52ac-40d9-abd8-3f8a77c46544 7dc27c55c21ef616628d15ddd4ec281d {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor"} -C3N-00549.RNA-Seq.S17_L005_R1.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R1_001.fastq.gz 4010196717 FASTQ S17_L005_R1 unaligned CPTAC3 154668d4-59cb-49a9-aa0d-08461440f214 b7cd7d05fd5d1484642fe63765a28831 {"aliquot_tag": "ALQ_31a21d06", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00549.RNA-Seq.S17_L005_R2.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R2_001.fastq.gz 4272357063 FASTQ S17_L005_R2 unaligned CPTAC3 44ea39eb-a35d-4a3c-ab7f-8a652fe9b44e dd9b4d66f4f11a6126d44a832ee15ab3 {"aliquot_tag": "ALQ_31a21d06", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00549.RNA-Seq.S8_L008_R1.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R1_001.fastq.gz 3979552161 FASTQ S8_L008_R1 unaligned CPTAC3 af200d9b-d9c0-4a76-8ca3-0749e2d15a57 a4d7e99332a610f514cb4f292b01551d {"aliquot_tag": "ALQ_acda6361", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.RNA-Seq.S8_L008_R2.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R2_001.fastq.gz 4093907616 FASTQ S8_L008_R2 unaligned CPTAC3 02fa58de-b4e8-49ec-b38c-0fdb07d6ca3b b9a1d3e6621da69eaa7bd1f4b0c6f8e3 {"aliquot_tag": "ALQ_acda6361", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.RNA-Seq.transcriptome.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.transcriptome.gdc_realn.bam 9352104723 BAM transcriptome harmonized CPTAC3 513c2cfa-719d-441a-af51-26fc041ac32f eb9ce08ceb96af9b9d3a608d753b73ba {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.RNA-Seq.transcriptome.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.transcriptome.gdc_realn.bam 9644973629 BAM transcriptome harmonized CPTAC3 1ec3a04c-304d-417c-bb07-d3bc888b9964 84395712beceef5da0749abedd3540f4 {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor"} -C3N-00549.WGS.A C3N-00549 LUAD WGS tissue_normal CPT0067470010 CPT0067470010.WholeGenome.RP-1303.bam 62419695456 BAM aligned CPTAC3 92c6844e-df24-492b-883a-4ff90429bb1e c5da8d7e35deb74be6d800d454b5b877 {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.WGS.A.hg38 C3N-00549 LUAD WGS tissue_normal CPT0067470010 2210dd00-301f-4e3d-884a-8c31f719c3e7_wgs_gdc_realn.bam 93167218040 BAM harmonized CPTAC3 893a6769-06e8-43dd-8ef2-61870f9a4b24 d575589bdaf08a23b033259b24a1b662 {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.WGS.N C3N-00549 LUAD WGS blood_normal CPT0067550002 CPT0067550002.WholeGenome.RP-1303.bam 73381198481 BAM aligned CPTAC3 36f307d4-bd1f-4d2e-b714-640d7f8f7780 9285fd4715646ee3c9a350559b6e21b3 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00549.WGS.N.hg38 C3N-00549 LUAD WGS blood_normal CPT0067550002 9400b41a-1c41-4139-83b1-dc9c59f3535c_gdc_realn.bam 113287330947 BAM harmonized CPTAC3 75a2d28d-ff7a-4ab2-a2dd-ee502d96ff98 3427eda1af5c74dfa8b2c81c0003dca9 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00549.WGS.T C3N-00549 LUAD WGS tumor CPT0067450006 CPT0067450006.WholeGenome.RP-1303.bam 80314942538 BAM aligned CPTAC3 fdef4471-aeb8-4f0a-b8d3-6817f55db651 38d98f395aa0f06edaa2d6e0abe78389 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor"} -C3N-00549.WGS.T.hg38 C3N-00549 LUAD WGS tumor CPT0067450006 b269581f-4996-46b7-8cd4-67a687921374_gdc_realn.bam 119443173471 BAM harmonized CPTAC3 76b1affa-bdec-49d6-b41a-2b41875edbac a19da7290f1842576ecf12b71f838f7b {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor"} -C3N-00549.WXS.A C3N-00549 LUAD WXS tissue_normal CPT0067470010 CPT0067470010.WholeExome.RP-1303.bam 34984274510 BAM aligned CPTAC3 321c145d-fc0d-4336-9ae1-f13e075ff2dd 9e8c084c4878d93cd5e2e7a4e9b7c28f {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.WXS.A.hg38 C3N-00549 LUAD WXS tissue_normal CPT0067470010 2210dd00-301f-4e3d-884a-8c31f719c3e7_wxs_gdc_realn.bam 48159967312 BAM harmonized CPTAC3 a7a3e9f0-cc11-4602-9368-1c372e0c4949 5624e09817fdb9c015a46cbdfdb6719e {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00549.WXS.N C3N-00549 LUAD WXS blood_normal CPT0067550002 CPT0067550002.WholeExome.RP-1303.bam 24856797591 BAM aligned CPTAC3 eb24b207-e2a2-4d6b-848d-9443408d4896 2b7171b6304d681e73f8b404e36c72e9 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00549.WXS.N.hg38 C3N-00549 LUAD WXS blood_normal CPT0067550002 9400b41a-1c41-4139-83b1-dc9c59f3535c_gdc_realn.bam 33825533866 BAM harmonized CPTAC3 1ea2b3f3-deaa-4144-9eaa-9fb9652618b0 f4bbbb9b2da37c010ac79db371a00888 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00549.WXS.T C3N-00549 LUAD WXS tumor CPT0067450006 CPT0067450006.WholeExome.RP-1303.bam 26400758884 BAM aligned CPTAC3 850fc43c-5f44-420b-97ca-23855e9f728d 9b553aa66e88b663b200f6b248a49d44 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor"} -C3N-00549.WXS.T.hg38 C3N-00549 LUAD WXS tumor CPT0067450006 b269581f-4996-46b7-8cd4-67a687921374_gdc_realn.bam 36339108083 BAM harmonized CPTAC3 e3841eed-9dc6-4ff5-bf0c-744d595cf381 ee1c419bdb535f619296ebd96b5e1857 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor"} -C3N-00550.MethArray.Green.A C3N-00550 LUAD Methylation_Array tissue_normal CPT0067770009 203027390028_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e060469f-be14-4c73-94e8-813e202c0e76 69ddb507beb18cb51ee9481ec92c20ac {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.MethArray.Green.T C3N-00550 LUAD Methylation_Array tumor CPT0067620006 202184900127_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 d7a214a5-8747-4866-8724-ce6dfa7606b5 d10f6daa9aa9491239338244242de352 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor"} -C3N-00550.MethArray.Red.A C3N-00550 LUAD Methylation_Array tissue_normal CPT0067770009 203027390028_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b90cf78-83d7-45c9-8a1c-5db4e0ab9818 86b963a52e2a2c3569c52a300328a0d8 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.MethArray.Red.T C3N-00550 LUAD Methylation_Array tumor CPT0067620006 202184900127_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 b0bd79e3-fcea-43f0-ba9b-483ff5ce3920 4f5119ab17b6f43457fac48e9c13ef55 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor"} -C3N-00550.miRNA-Seq.A.hg38 C3N-00550 LUAD miRNA-Seq tissue_normal CPT0067770006 cb5f73c6-b1c0-4d34-ad16-767420cf2291_mirnaseq_gdc_realn.bam 280558043 BAM harmonized CPTAC3 f0168142-70f7-4565-a991-5bae1770a670 32b4228e6748b0f143537e35715c2ce1 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.miRNA-Seq.S17_L001_R1.T C3N-00550 LUAD miRNA-Seq tumor CPT0067620009 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 189707681 BAM S17_L001_R1 unaligned CPTAC3 2cd3deb4-56c5-4c30-83f0-ce5cd489775a c9d5a3b037cf7e61301d07f18c97c036 {"aliquot_tag": "ALQ_ce4a601d", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00550.miRNA-Seq.S43_L008_R1.A C3N-00550 LUAD miRNA-Seq tissue_normal CPT0067770006 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L008_R1_001.unaln.bam 255582808 BAM S43_L008_R1 unaligned CPTAC3 375be6c0-423c-438e-a101-0ed2696f77fc 22c632f204f62d710f886bcb0d0365e8 {"aliquot_tag": "ALQ_5d492159", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.miRNA-Seq.T.hg38 C3N-00550 LUAD miRNA-Seq tumor CPT0067620009 67bb7154-cfb4-4c29-ba67-c025d395d885_mirnaseq_gdc_realn.bam 206312806 BAM harmonized CPTAC3 a70f59d8-32f2-4fa2-bc4c-bb1c14a5b74a 5f1fb6b42d60b5f69f201ba39a15a4a8 {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor"} -C3N-00550.RNA-Seq.chimeric.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.chimeric.gdc_realn.bam 116784292 BAM chimeric harmonized CPTAC3 bf157dcf-f0dd-4e4f-b1a5-3be01709365d b283b7602bee409ac6ce634ec64ae106 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.RNA-Seq.chimeric.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.chimeric.gdc_realn.bam 22916056 BAM chimeric harmonized CPTAC3 685b30c1-88b2-4991-8efa-d52e0eff1f15 b10e59383c68df5f630b2bc4ee5b8199 {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor"} -C3N-00550.RNA-Seq.genomic.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.genomic.gdc_realn.bam 8303918161 BAM genomic harmonized CPTAC3 3b9924e5-82de-4cd4-b0f9-ea98f7db7b93 6be66604a701934952715228c9434f77 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.RNA-Seq.genomic.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.genomic.gdc_realn.bam 7495958990 BAM genomic harmonized CPTAC3 9675c43e-0c7c-4165-b3d5-c340267ad8ca 0c2cb0a882cbbcf144b9202fca92997a {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor"} -C3N-00550.RNA-Seq.S20_L005_R1.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R1_001.fastq.gz 3515716414 FASTQ S20_L005_R1 unaligned CPTAC3 791fb1c3-7cd1-4ca5-a331-3bef8adf2c40 562bb187ae058e8cc9e5ffd515028e93 {"aliquot_tag": "ALQ_ce4a601d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00550.RNA-Seq.S20_L005_R2.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R2_001.fastq.gz 3843912618 FASTQ S20_L005_R2 unaligned CPTAC3 8b6f0c92-16a0-4c0c-9cd2-17fafd97572d ab491e9ebe363492345608c2f27a0013 {"aliquot_tag": "ALQ_ce4a601d", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00550.RNA-Seq.S3_L007_R1.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R1_001.fastq.gz 4002937675 FASTQ S3_L007_R1 unaligned CPTAC3 4cc60b03-ca6b-43ee-bc7c-ff4656d7476a d9d22523f7745cb24838c2626bf4b7de {"aliquot_tag": "ALQ_5d492159", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.RNA-Seq.S3_L007_R2.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R2_001.fastq.gz 4464279179 FASTQ S3_L007_R2 unaligned CPTAC3 a5cb2d01-441b-4a21-92b5-7233e6b4bf0b 6215ee56fce751002bdb76d1cb1946ba {"aliquot_tag": "ALQ_5d492159", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.RNA-Seq.transcriptome.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.transcriptome.gdc_realn.bam 9843406068 BAM transcriptome harmonized CPTAC3 55d01376-65d5-4866-b7c8-2a6d04ead5dd 3a12230c2a17a4d13042784259e6a853 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.RNA-Seq.transcriptome.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.transcriptome.gdc_realn.bam 10623267730 BAM transcriptome harmonized CPTAC3 34c714b2-040a-49e7-8abe-577e63367bef d06e6a92a00ae8f09ceb32c61f9db8e3 {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor"} -C3N-00550.WGS.A C3N-00550 LUAD WGS tissue_normal CPT0067770009 CPT0067770009.WholeGenome.RP-1303.bam 56380642062 BAM aligned CPTAC3 8bd7ae54-dadc-46b8-a826-d8123c48c9cd a232864e8cc7710d15fd2fed209946b1 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.WGS.A.hg38 C3N-00550 LUAD WGS tissue_normal CPT0067770009 4e99325b-224f-4d44-9791-61fd8e4b735c_wgs_gdc_realn.bam 83959386181 BAM harmonized CPTAC3 0b563c9b-8d46-4c32-9fea-bdb6a5be5f24 794c7463ba61cea633643104093aeb82 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.WGS.N C3N-00550 LUAD WGS blood_normal CPT0067850002 CPT0067850002.WholeGenome.RP-1303.bam 71592199298 BAM aligned CPTAC3 ee106363-1f81-4939-bf37-b25619e54dec 4983d7d19aa77ecdf48d6e670840aa11 {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal"} -C3N-00550.WGS.N.hg38 C3N-00550 LUAD WGS blood_normal CPT0067850002 e1adcb02-b22a-4ee5-bf75-701907f3d2a0_gdc_realn.bam 107822909713 BAM harmonized CPTAC3 a17e365c-bf3d-4f64-bda6-6cf02df8ea02 4250b86ad040d35af8b7b02978314b18 {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal"} -C3N-00550.WGS.T C3N-00550 LUAD WGS tumor CPT0067620006 CPT0067620006.WholeGenome.RP-1303.bam 71468336655 BAM aligned CPTAC3 7371dc69-51a6-4608-996b-c1c3921e48e2 91eb38921fb54db9008c0c048c400cfc {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor"} -C3N-00550.WGS.T.hg38 C3N-00550 LUAD WGS tumor CPT0067620006 ab486740-7504-4009-8fa1-5b36b5ae988e_gdc_realn.bam 103421970091 BAM harmonized CPTAC3 8f91e7e3-9f42-451b-9e2b-f8908f9488a1 611dc10ecf6846c168902e4755bbd7c7 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor"} -C3N-00550.WXS.A C3N-00550 LUAD WXS tissue_normal CPT0067770009 CPT0067770009.WholeExome.RP-1303.bam 46883548726 BAM aligned CPTAC3 6f5dded3-79ca-4611-8942-0c396d8b6fea 4000996335cc6d28cdaef5046322e103 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.WXS.A.hg38 C3N-00550 LUAD WXS tissue_normal CPT0067770009 4e99325b-224f-4d44-9791-61fd8e4b735c_wxs_gdc_realn.bam 64542711435 BAM harmonized CPTAC3 3008d2b6-33f2-4188-98f7-b798e84c095d c6e79c4a237cc74105a6a48131158857 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00550.WXS.N C3N-00550 LUAD WXS blood_normal CPT0067850002 CPT0067850002.WholeExome.RP-1303.bam 28806277885 BAM aligned CPTAC3 d1b48a25-a3af-4ac8-a04c-6bc98d9e88bb 2eb185a83eea43e9e50256097b8817f0 {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal"} -C3N-00550.WXS.N.hg38 C3N-00550 LUAD WXS blood_normal CPT0067850002 e1adcb02-b22a-4ee5-bf75-701907f3d2a0_gdc_realn.bam 39044458850 BAM harmonized CPTAC3 24a56d2c-52df-4b4e-890f-37bfeab84486 6041e79060540548f73e604fbe151d1e {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal"} -C3N-00550.WXS.T C3N-00550 LUAD WXS tumor CPT0067620006 CPT0067620006.WholeExome.RP-1303.bam 27533393727 BAM aligned CPTAC3 e6277e1c-6416-4036-a8e2-a4dd0bcc27c3 2401d55610693505c2d9709f3ad33811 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor"} -C3N-00550.WXS.T.hg38 C3N-00550 LUAD WXS tumor CPT0067620006 ab486740-7504-4009-8fa1-5b36b5ae988e_gdc_realn.bam 37776781482 BAM harmonized CPTAC3 8754ff08-daab-4b4c-b783-8bfb9a5a47a7 cbc14b25c126b58df36ad07d49c62a5d {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor"} -C3N-00551.MethArray.Green.A C3N-00551 LUAD Methylation_Array tissue_normal CPT0067950009 203027390078_R08C01_Grn.idat 13676228 IDAT Green NA CPTAC3 5aa1309f-f982-4989-88b1-47e9e8973e2b 03a01c9bc5281b9f774f079d48c27e51 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.MethArray.Green.T C3N-00551 LUAD Methylation_Array tumor CPT0067940006 202184990057_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4d24f8e4-4e29-475e-937f-c116c6ec320e 50f331121f76534deabe160c4c94600f {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor"} -C3N-00551.MethArray.Red.A C3N-00551 LUAD Methylation_Array tissue_normal CPT0067950009 203027390078_R08C01_Red.idat 13676228 IDAT Red NA CPTAC3 6aa69590-6e08-4c51-bec0-150784e157b8 3f25888ba50ff1d70df39809528234d1 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.MethArray.Red.T C3N-00551 LUAD Methylation_Array tumor CPT0067940006 202184990057_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a114a673-0ebf-4ded-bfe5-d9ac8df24735 b64fc3e52e1d3643155889c01310bdc5 {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor"} -C3N-00551.miRNA-Seq.A.hg38 C3N-00551 LUAD miRNA-Seq tissue_normal CPT0067950006 40895461-7f43-4b02-bf95-8ba8a000b116_mirnaseq_gdc_realn.bam 256422570 BAM harmonized CPTAC3 dd6dd727-67cd-4cce-8377-3b2b26a7e331 c9053eb14d7cbb719de629a4f2c23a86 {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.miRNA-Seq.S18_L001_R1.T C3N-00551 LUAD miRNA-Seq tumor CPT0067940009 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 179505673 BAM S18_L001_R1 unaligned CPTAC3 30131e43-140c-492b-8fdd-fc94c994c682 771a134e293b834074188f4eb26eb232 {"aliquot_tag": "ALQ_b05c2768", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00551.miRNA-Seq.S44_L008_R1.A C3N-00551 LUAD miRNA-Seq tissue_normal CPT0067950006 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L008_R1_001.unaln.bam 234106645 BAM S44_L008_R1 unaligned CPTAC3 c4ea9c56-fc32-453d-92bb-abd2fae47ef6 065336d0550c3959c9724d1fc6b1f36d {"aliquot_tag": "ALQ_1d831349", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.miRNA-Seq.T.hg38 C3N-00551 LUAD miRNA-Seq tumor CPT0067940009 0316fde7-9410-4bf4-8ea9-0fcab43a10fa_mirnaseq_gdc_realn.bam 195505530 BAM harmonized CPTAC3 6675de2d-d83d-4c5f-9518-2eb3cb6c35b4 8ffc9bb7ebe66e5addfd95ba4efa820b {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor"} -C3N-00551.RNA-Seq.chimeric.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.chimeric.gdc_realn.bam 93572212 BAM chimeric harmonized CPTAC3 68f597b9-a951-4d8c-866d-51aa81334445 6ee1f19dcd99bb774d47603351238014 {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.RNA-Seq.chimeric.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.chimeric.gdc_realn.bam 47838932 BAM chimeric harmonized CPTAC3 4594b4c5-fcba-4b65-8821-1f6b74c4d352 cb34022c0b7446668df49a38174589da {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor"} -C3N-00551.RNA-Seq.genomic.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.genomic.gdc_realn.bam 8977742637 BAM genomic harmonized CPTAC3 20eb1915-7928-4ad4-8675-a4f695bb3194 66a543e61678364853722dd15b22ff9e {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.RNA-Seq.genomic.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.genomic.gdc_realn.bam 8885705639 BAM genomic harmonized CPTAC3 d5ed9855-21a5-4f30-8bb4-f986fff7a861 84df683b06d8cf18c5798b6917d9e72f {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor"} -C3N-00551.RNA-Seq.S15_L004_R1.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R1_001.fastq.gz 4110274310 FASTQ S15_L004_R1 unaligned CPTAC3 29bd87a3-d9bd-48dc-bd2e-2697bae33679 be57f997b4a94238c33a97ac7f4d9969 {"aliquot_tag": "ALQ_b05c2768", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00551.RNA-Seq.S15_L004_R2.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R2_001.fastq.gz 4159424531 FASTQ S15_L004_R2 unaligned CPTAC3 c958395d-0d81-4be2-90ac-d31e603ea771 07e6925c893886916560ca6d1b504cdd {"aliquot_tag": "ALQ_b05c2768", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00551.RNA-Seq.S7_L008_R1.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3992893950 FASTQ S7_L008_R1 unaligned CPTAC3 c33dd20d-f90c-4c90-80a9-5a73a584047d 42c0b54747559ab7f3f09b374881175d {"aliquot_tag": "ALQ_1d831349", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.RNA-Seq.S7_L008_R2.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R2_001.fastq.gz 4462100729 FASTQ S7_L008_R2 unaligned CPTAC3 6a947afc-c67d-471c-8ed0-26d17a3b1ea6 9d8303d90190a6899510944711c8b36b {"aliquot_tag": "ALQ_1d831349", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.RNA-Seq.transcriptome.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.transcriptome.gdc_realn.bam 9726948279 BAM transcriptome harmonized CPTAC3 e1efaa1e-80d6-4b84-9ed2-8efa55e7e2af 40a19b3467fd6df191c7db2ae8755a60 {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.RNA-Seq.transcriptome.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.transcriptome.gdc_realn.bam 11285297272 BAM transcriptome harmonized CPTAC3 8cd9eff7-0578-4d48-b854-3ac862382396 ed4cbedfa0a453fd873bc416e0895a38 {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor"} -C3N-00551.WGS.A C3N-00551 LUAD WGS tissue_normal CPT0067950009 CPT0067950009.WholeGenome.RP-1303.bam 61728450587 BAM aligned CPTAC3 76f29f7f-8c65-4c4b-9e25-249a9a085a8a 3d821aa2f9be3d1007a0e5b83516ede9 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.WGS.A.hg38 C3N-00551 LUAD WGS tissue_normal CPT0067950009 cff714c1-b7ce-4726-a1b0-0985edc347de_wgs_gdc_realn.bam 89463299958 BAM harmonized CPTAC3 7bccf500-e1bc-44a4-900b-cf46fdc504d4 e3dc5b0b98736af7f73a4f3ca4058e84 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.WGS.N C3N-00551 LUAD WGS blood_normal CPT0068030002 CPT0068030002.WholeGenome.RP-1303.bam 80182733610 BAM aligned CPTAC3 179fb90e-d888-4cfc-8ee1-daed92a23886 f46997b0d7a470d1a6e41a6c526322f5 {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00551.WGS.N.hg38 C3N-00551 LUAD WGS blood_normal CPT0068030002 a63bf187-8e4a-4b33-b44a-5cf57dab7c7b_gdc_realn.bam 122941400403 BAM harmonized CPTAC3 f6d5c5d5-6e86-4028-83ed-d12604d82861 37e9a72e536dc92cb978d23f180bf93b {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00551.WGS.T C3N-00551 LUAD WGS tumor CPT0067940006 CPT0067940006.WholeGenome.RP-1303.bam 68958949448 BAM aligned CPTAC3 f9398df2-c29d-410d-bf20-2a8495d98078 0855bd2033fda194bdb0434bf67f7b2c {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor"} -C3N-00551.WGS.T.hg38 C3N-00551 LUAD WGS tumor CPT0067940006 2e2afbe4-e8c0-452e-b150-6527fd1b52ad_gdc_realn.bam 103622481485 BAM harmonized CPTAC3 b5490e05-b3af-43a2-a38f-3f95b2b14bb5 09827d1ebaf63bd2a9fb37b9d32101f8 {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor"} -C3N-00551.WXS.A C3N-00551 LUAD WXS tissue_normal CPT0067950009 CPT0067950009.WholeExome.RP-1303.bam 28482655020 BAM aligned CPTAC3 6bafc1d5-ae2e-4e5c-ab2f-ccff75f1d605 60f55010f7eeacb99ada600104c9ba9b {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.WXS.A.hg38 C3N-00551 LUAD WXS tissue_normal CPT0067950009 cff714c1-b7ce-4726-a1b0-0985edc347de_wxs_gdc_realn.bam 38752516893 BAM harmonized CPTAC3 fb197d81-9ca6-4ced-a15b-333379e68a71 e986531db41df270ef3f7bab372822d1 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00551.WXS.N C3N-00551 LUAD WXS blood_normal CPT0068030002 CPT0068030002.WholeExome.RP-1303.bam 29924478667 BAM aligned CPTAC3 1e4911b9-ccb8-4b2b-a8cd-1e88fb1a6c1e 4827292234669393a2659acdeaa42b49 {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00551.WXS.N.hg38 C3N-00551 LUAD WXS blood_normal CPT0068030002 a63bf187-8e4a-4b33-b44a-5cf57dab7c7b_gdc_realn.bam 39903652719 BAM harmonized CPTAC3 3ccc100e-9776-4d24-b055-5f60cf4f404f 58096d2351bc54796ffc446f3cb63013 {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal"} -C3N-00551.WXS.T C3N-00551 LUAD WXS tumor CPT0067940006 CPT0067940006.WholeExome.RP-1303.bam 25582851770 BAM aligned CPTAC3 e6754e8e-5f22-4f24-8523-e6409385852b 6a2c17f37d75827705fc1e830b9d562b {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor"} -C3N-00551.WXS.T.hg38 C3N-00551 LUAD WXS tumor CPT0067940006 2e2afbe4-e8c0-452e-b150-6527fd1b52ad_gdc_realn.bam 35290874314 BAM harmonized CPTAC3 6884df1c-37d4-48ad-bb75-851222cf0cf3 0f8a90f997c4d3fa5ff026e56b28ed9c {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor"} -C3N-00552.MethArray.Green.A C3N-00552 LUAD Methylation_Array tissue_normal CPT0068130009 203028200104_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 96cd1ede-1937-4dde-91a3-ef636c7fbf37 61a7e382aa909a3bfbf6f1fe73dfef4d {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.MethArray.Green.T C3N-00552 LUAD Methylation_Array tumor CPT0068100006 202184900104_R05C01_Grn.idat 13676256 IDAT Green NA CPTAC3 d0f2ceb5-c816-4ca5-98c3-ac0b569fe6e4 25f04471862ffdfbd0e477ebc6de3b1b {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor"} -C3N-00552.MethArray.Red.A C3N-00552 LUAD Methylation_Array tissue_normal CPT0068130009 203028200104_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 f604f94a-bc8e-4312-9d89-b98907e24e01 470b4cacfabd1d1ab1e36787662d3dd5 {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.MethArray.Red.T C3N-00552 LUAD Methylation_Array tumor CPT0068100006 202184900104_R05C01_Red.idat 13676256 IDAT Red NA CPTAC3 52c32ef0-ebd7-4389-90ff-e36bdd547b80 71f86f50b528b02458f0e18a33524641 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor"} -C3N-00552.miRNA-Seq.A.hg38 C3N-00552 LUAD miRNA-Seq tissue_normal CPT0068130006 d11db476-2c34-4c56-baba-8914d4dd4f07_mirnaseq_gdc_realn.bam 234013537 BAM harmonized CPTAC3 227cc725-2668-40b2-acbc-994a98d5295b 4011b74629118c310d5c439cee04d4a5 {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.miRNA-Seq.S19_L001_R1.T C3N-00552 LUAD miRNA-Seq tumor CPT0068100009 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 161250808 BAM S19_L001_R1 unaligned CPTAC3 eab91d7b-7b48-4045-9dd9-171639850d62 d3faf5ab271d3d5c89e753995db853f9 {"aliquot_tag": "ALQ_5fc7732c", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00552.miRNA-Seq.S45_L008_R1.A C3N-00552 LUAD miRNA-Seq tissue_normal CPT0068130006 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L008_R1_001.unaln.bam 212786482 BAM S45_L008_R1 unaligned CPTAC3 3efd57ad-9a51-42f8-8e6b-b4e08c16a76e e482885d426f00019b9d1c658a8ebf97 {"aliquot_tag": "ALQ_88d8146d", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.miRNA-Seq.T.hg38 C3N-00552 LUAD miRNA-Seq tumor CPT0068100009 3e7169fd-38f2-47bc-9812-5fc122994e44_mirnaseq_gdc_realn.bam 180785685 BAM harmonized CPTAC3 197c142c-69cd-4f1a-8bea-ff0664394d1f 6756f6f9927554604cd8cf636fa4a3b8 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor"} -C3N-00552.RNA-Seq.chimeric.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.chimeric.gdc_realn.bam 97641273 BAM chimeric harmonized CPTAC3 b5a3f5c8-8d65-4749-aae0-f9d3e50b0994 41f9353f445be0eb461fd70ea67bc1d8 {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.RNA-Seq.chimeric.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.chimeric.gdc_realn.bam 27104175 BAM chimeric harmonized CPTAC3 7b6b510d-bf8f-4072-9004-9b23ce6926ad 42ea53610afc7e695d4de0e0d6629e73 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor"} -C3N-00552.RNA-Seq.genomic.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.genomic.gdc_realn.bam 8809570236 BAM genomic harmonized CPTAC3 edbafefc-d95c-4ef8-a775-d189672aa5eb 0dcaa2ac1c3767cafa9d98a3922895de {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.RNA-Seq.genomic.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.genomic.gdc_realn.bam 8614145561 BAM genomic harmonized CPTAC3 9f855f9c-9559-4b0c-ae88-c2d92797d649 4b089147536d87695a34f6aed1a7e347 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor"} -C3N-00552.RNA-Seq.S14_L004_R1.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4015266671 FASTQ S14_L004_R1 unaligned CPTAC3 1978e5dc-257f-4e5d-9c63-ac5fc0067c91 05100d5e33b1ff26caad98be3faf04dc {"aliquot_tag": "ALQ_5fc7732c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00552.RNA-Seq.S14_L004_R2.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4316107755 FASTQ S14_L004_R2 unaligned CPTAC3 212bf3ea-e284-42bd-bd24-0247b4a534c1 0793d22cede912553043b6c9e7fd7b2a {"aliquot_tag": "ALQ_5fc7732c", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00552.RNA-Seq.S2_L007_R1.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R1_001.fastq.gz 3627754185 FASTQ S2_L007_R1 unaligned CPTAC3 d76399c6-80ce-4766-a6e1-ca1b85a7ea51 a2696327cc851ccb9297f1158a1a0069 {"aliquot_tag": "ALQ_88d8146d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.RNA-Seq.S2_L007_R2.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R2_001.fastq.gz 4053540193 FASTQ S2_L007_R2 unaligned CPTAC3 5e971d5a-cc93-4c9f-8dbc-cc242579c8a7 c1c240343af24d316f5aee3d1889bb55 {"aliquot_tag": "ALQ_88d8146d", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.RNA-Seq.transcriptome.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.transcriptome.gdc_realn.bam 7700653199 BAM transcriptome harmonized CPTAC3 f0cdf6d7-aa6b-4959-84e6-75a81a14b736 6cae67979e56cbd7adb55f2ed46496b8 {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.RNA-Seq.transcriptome.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.transcriptome.gdc_realn.bam 11156375343 BAM transcriptome harmonized CPTAC3 0c99c22e-9ebd-43c3-8d45-e07892b7ec39 b2d95e417c9b2630805b1243064a74e8 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor"} -C3N-00552.WGS.A C3N-00552 LUAD WGS tissue_normal CPT0068130009 CPT0068130009.WholeGenome.RP-1303.bam 57071686575 BAM aligned CPTAC3 81d4f4e5-c6dd-4848-9d06-9ad4fef36961 0f2e974d37ac5d103d44e643ee7b048b {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.WGS.A.hg38 C3N-00552 LUAD WGS tissue_normal CPT0068130009 516de7b2-eddb-4b15-869a-4e1ef56abce4_wgs_gdc_realn.bam 84673363958 BAM harmonized CPTAC3 4e69d7c7-d920-4075-9d61-ca2d891ffc99 0447dcece0ed9a91b05d68832884abb2 {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.WGS.N C3N-00552 LUAD WGS blood_normal CPT0068210002 CPT0068210002.WholeGenome.RP-1303.bam 85834897525 BAM aligned CPTAC3 fb28fc91-e3b5-446c-9c92-239fe8f94528 423559acae31103948e8afe0f4a76dec {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-00552.WGS.N.hg38 C3N-00552 LUAD WGS blood_normal CPT0068210002 397dec2a-b730-4e76-9f22-cf04d07980c0_gdc_realn.bam 128714272978 BAM harmonized CPTAC3 3f3922ca-65e6-425b-b9a6-6726467bd527 fbf8f4426ab4e4e053cb5fbde14ca407 {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-00552.WGS.T C3N-00552 LUAD WGS tumor CPT0068100006 CPT0068100006.WholeGenome.RP-1303.bam 69273936988 BAM aligned CPTAC3 aca8b319-26fe-4823-ac07-f83040e2de62 662f6ee4f931f90cb9fae59f5bdd53ad {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor"} -C3N-00552.WGS.T.hg38 C3N-00552 LUAD WGS tumor CPT0068100006 08423635-fe99-41bf-96a0-cdea06897bde_gdc_realn.bam 103147443378 BAM harmonized CPTAC3 385a6831-e760-4f9d-9aaf-4a1bf92ecb7d 7c08050c3a6d2fbd9cf942de72556f87 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor"} -C3N-00552.WXS.A C3N-00552 LUAD WXS tissue_normal CPT0068130009 CPT0068130009.WholeExome.RP-1303.bam 44783109182 BAM aligned CPTAC3 3d424dcc-c491-478a-a2f7-80f44e83939f dfd75f881bab95c379844f0943ea3c8f {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.WXS.A.hg38 C3N-00552 LUAD WXS tissue_normal CPT0068130009 516de7b2-eddb-4b15-869a-4e1ef56abce4_wxs_gdc_realn.bam 61530696108 BAM harmonized CPTAC3 1c886217-9753-40af-84d7-204cff0792cb e6921dfc304cb41757a4a45d44d87a33 {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00552.WXS.N C3N-00552 LUAD WXS blood_normal CPT0068210002 CPT0068210002.WholeExome.RP-1303.bam 27736395871 BAM aligned CPTAC3 f2d46ae9-2953-4314-ab23-efe14d64a675 37e703af8fd4098c4b26f11ae8396750 {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-00552.WXS.N.hg38 C3N-00552 LUAD WXS blood_normal CPT0068210002 397dec2a-b730-4e76-9f22-cf04d07980c0_gdc_realn.bam 38053302981 BAM harmonized CPTAC3 51f324bb-f989-4ff0-965d-4f052704d411 d347a734ee6c2b0e684b433849e671b9 {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-00552.WXS.T C3N-00552 LUAD WXS tumor CPT0068100006 CPT0068100006.WholeExome.RP-1303.bam 31449721204 BAM aligned CPTAC3 2bae31d9-2842-4fb1-8753-9f1261759c29 4bf057ed71c88227d186898c85b762d3 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor"} -C3N-00552.WXS.T.hg38 C3N-00552 LUAD WXS tumor CPT0068100006 08423635-fe99-41bf-96a0-cdea06897bde_gdc_realn.bam 43612758187 BAM harmonized CPTAC3 26be535a-69cf-4890-819b-6665e10ef4e7 7b77e67d97b48be556d76d8bab4155b4 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor"} -C3N-00555.MethArray.Green.A C3N-00555 LSCC Methylation_Array tissue_normal CPT0068320009 203219650003_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 af20212a-9782-4b4c-af65-ae7e389f4f1b c3b0ffbdf8183ea7f7b41a80b4fd7d1d {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.MethArray.Green.T C3N-00555 LSCC Methylation_Array tumor CPT0068280006 202178770008_R06C01_Grn.idat 13676232 IDAT Green NA CPTAC3 8b453369-bd1f-46e0-802e-8e958f334147 dc2a11ff9c8e8ffbf683db3c0190f2b2 {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor"} -C3N-00555.MethArray.Red.A C3N-00555 LSCC Methylation_Array tissue_normal CPT0068320009 203219650003_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 8a8202a8-28fa-453c-8ba7-98181d7f0a88 63ef1683d905634da1fe7cf1fd1ddca3 {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.MethArray.Red.T C3N-00555 LSCC Methylation_Array tumor CPT0068280006 202178770008_R06C01_Red.idat 13676232 IDAT Red NA CPTAC3 cf9973c5-81bc-499e-bb72-a301ba90f429 fc44dfb3c9de5674c80de8ef72664a4b {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor"} -C3N-00555.miRNA-Seq.A.hg38 C3N-00555 LSCC miRNA-Seq tissue_normal CPT0068320006 fe335f4c-e8c3-4a1d-a4a0-b4ba0db64c53_mirnaseq_gdc_realn.bam 175632414 BAM harmonized CPTAC3 e3e3231d-68c8-4fbb-bddb-e760139bc25e 913e14b9aecfbf585792152aadc8c48f {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.miRNA-Seq.S20_L007_R1.T C3N-00555 LSCC miRNA-Seq tumor CPT0068280009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L007_R1_001.unaln.bam 192093660 BAM S20_L007_R1 unaligned CPTAC3 2d1b4a24-2bb0-4e25-a331-6a28a4f31488 f5b10b70e2d32d2b5ad259a0e62ec609 {"aliquot_tag": "ALQ_e9234a43", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00555.miRNA-Seq.S32_L006_R1.A C3N-00555 LSCC miRNA-Seq tissue_normal CPT0068320006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTTGA_S32_L006_R1_001.unaln.bam 157445820 BAM S32_L006_R1 unaligned CPTAC3 6aee98d8-e3b3-4b43-893d-9a3abf27bb00 d4083cdd9487071062dff8b70400b5b9 {"aliquot_tag": "ALQ_f8709cd6", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.miRNA-Seq.T.hg38 C3N-00555 LSCC miRNA-Seq tumor CPT0068280009 aec6d1ee-56a4-4b35-9303-e11742430f33_mirnaseq_gdc_realn.bam 223105127 BAM harmonized CPTAC3 4d4e1e56-e0c8-45c7-aae8-aa8f2f28482a 0ca0e5a089e703be12b88cd3f4a7bfa3 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor"} -C3N-00555.RNA-Seq.chimeric.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.chimeric.gdc_realn.bam 32176855 BAM chimeric harmonized CPTAC3 c3a74dca-a3a8-4d4a-8eca-99170e4a97c2 2902ec6d0a6cc505881e1f27b8f432c2 {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.RNA-Seq.chimeric.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.chimeric.gdc_realn.bam 28680551 BAM chimeric harmonized CPTAC3 5c619c6c-67fb-4284-b957-dfd4f5292c3b 24a0bafe44c2dd1e1e296ffa0ea35042 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor"} -C3N-00555.RNA-Seq.genomic.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.genomic.gdc_realn.bam 7118429765 BAM genomic harmonized CPTAC3 41231211-df7d-47ce-be94-b5b3652aa1cb fcd764e7c68eb72fb0fe9c1c803b5e1b {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.RNA-Seq.genomic.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.genomic.gdc_realn.bam 8891282302 BAM genomic harmonized CPTAC3 a60dce74-6cc3-4b1f-a09a-994b95ec1952 38f3fd2cc62dd951d2b11e2556961b77 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor"} -C3N-00555.RNA-Seq.S13_L004_R1.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 4111280734 FASTQ S13_L004_R1 unaligned CPTAC3 e4d8ed76-350f-43c7-bc82-a3dd416e97ca 4c32b0fe0469917bd62cc37c8c98423d {"aliquot_tag": "ALQ_e9234a43", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00555.RNA-Seq.S13_L004_R2.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 4439030856 FASTQ S13_L004_R2 unaligned CPTAC3 f7f1a551-b56e-4658-81ba-73c44413f456 7a92e6a807a2c28c37393640d3b14524 {"aliquot_tag": "ALQ_e9234a43", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00555.RNA-Seq.S24_L006_R1.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3203664411 FASTQ S24_L006_R1 unaligned CPTAC3 c6c4d496-0c01-4a5c-acb2-dcaa4902a712 3912d5c47bc3457c50dbb271e692a568 {"aliquot_tag": "ALQ_f8709cd6", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.RNA-Seq.S24_L006_R2.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 3525966528 FASTQ S24_L006_R2 unaligned CPTAC3 ce2c7a38-9da9-4f62-8166-3a9ec658c8cd de2cb29528b73aa218d50224bf4ca5eb {"aliquot_tag": "ALQ_f8709cd6", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.RNA-Seq.transcriptome.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.transcriptome.gdc_realn.bam 8749340232 BAM transcriptome harmonized CPTAC3 f15a19bc-6d9a-4ed7-b861-07aa7968f446 bac00c33b6e05c4e8631280843563aaf {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.RNA-Seq.transcriptome.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.transcriptome.gdc_realn.bam 12502618386 BAM transcriptome harmonized CPTAC3 78844a73-a982-4f20-aa8b-6ff91ada2a06 029d25cf7c3d12e9d974f1fe06c3eb79 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor"} -C3N-00555.WGS.A C3N-00555 LSCC WGS tissue_normal CPT0068320009 CPT0068320009.WholeGenome.RP-1303.bam 52166961154 BAM aligned CPTAC3 8349e79b-b15d-4737-9db1-3e1cc4a363cb 30bc066d0730be9a22221a5f6fe914a3 {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.WGS.A.hg38 C3N-00555 LSCC WGS tissue_normal CPT0068320009 7ad4d839-7612-4d70-97ac-e0ee7920826a_wgs_gdc_realn.bam 75502390228 BAM harmonized CPTAC3 a144f99d-1738-4d9a-90c9-64eff17fb789 0f6be56988fd7a7e641c4600fea3328b {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.WGS.N C3N-00555 LSCC WGS blood_normal CPT0068390002 CPT0068390002.WholeGenome.RP-1303.bam 75133534327 BAM aligned CPTAC3 3b9952c1-110d-4a96-80a2-44efe2e70f50 1bfa040696509a47ef23ac2bbe26e506 {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal"} -C3N-00555.WGS.N.hg38 C3N-00555 LSCC WGS blood_normal CPT0068390002 8f74dadd-7534-41a3-8025-0f9fd4bd5743_gdc_realn.bam 112252028059 BAM harmonized CPTAC3 df90a8f7-91fe-4249-a664-3fb9ceb71940 873ee39ef8cff911c14e30134ecaf57d {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal"} -C3N-00555.WGS.T C3N-00555 LSCC WGS tumor CPT0068280006 CPT0068280006.WholeGenome.RP-1303.bam 76600434793 BAM aligned CPTAC3 7ea81fc2-e31a-4e80-bb4f-4062c04248cc e23b9de83f42d192b86684a6548943d0 {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor"} -C3N-00555.WGS.T.hg38 C3N-00555 LSCC WGS tumor CPT0068280006 415e2d1f-8d86-4cd3-bdd2-45526a993d5d_gdc_realn.bam 114651923867 BAM harmonized CPTAC3 6dce2979-1a93-400d-a979-7c209f140b4a 6a09e9b2241b82547ad76d07a2d089ea {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor"} -C3N-00555.WXS.A C3N-00555 LSCC WXS tissue_normal CPT0068320009 CPT0068320009.WholeExome.RP-1303.bam 27573974634 BAM aligned CPTAC3 0b83c46f-2ed5-495a-90de-99db1452b517 eaa873bbd2b33ef60b957d8dfd9e199c {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.WXS.A.hg38 C3N-00555 LSCC WXS tissue_normal CPT0068320009 7ad4d839-7612-4d70-97ac-e0ee7920826a_wxs_gdc_realn.bam 37265494530 BAM harmonized CPTAC3 8a45c647-2669-43dd-ad83-1296b66648fd fbfbb3ad22f1d129c26fa2575a5767e6 {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00555.WXS.N C3N-00555 LSCC WXS blood_normal CPT0068390002 CPT0068390002.WholeExome.RP-1303.bam 28309802164 BAM aligned CPTAC3 292581e7-bcd7-4da5-9676-c689095d3fb3 24c510b2e76f5c4eb8b5e3da13c4897a {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal"} -C3N-00555.WXS.N.hg38 C3N-00555 LSCC WXS blood_normal CPT0068390002 8f74dadd-7534-41a3-8025-0f9fd4bd5743_gdc_realn.bam 38351489593 BAM harmonized CPTAC3 dbde810d-19ef-4825-8f83-f93f62b822d6 094a609a3286f5c6a94d6d8eba4f5075 {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal"} -C3N-00555.WXS.T C3N-00555 LSCC WXS tumor CPT0068280006 CPT0068280006.WholeExome.RP-1303.bam 34969716772 BAM aligned CPTAC3 8716f6ad-e0c5-4541-8a75-f058c7c9acb9 3c81864408a0776a44ad67045b94bb9d {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor"} -C3N-00555.WXS.T.hg38 C3N-00555 LSCC WXS tumor CPT0068280006 415e2d1f-8d86-4cd3-bdd2-45526a993d5d_gdc_realn.bam 47246801233 BAM harmonized CPTAC3 f812e7c5-876c-4090-902d-2f2fede73a97 fa030658b2b756735eb5dea9b08a8bd6 {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor"} -C3N-00556.MethArray.Green.A C3N-00556 LUAD Methylation_Array tissue_normal CPT0090720009 203027390040_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 4546ffb9-09ff-479e-a613-efd54284f386 5850a8276bbc4f356f3cbcd92eab2e71 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.MethArray.Green.T C3N-00556 LUAD Methylation_Array tumor CPT0090700009 202234380094_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 5e449913-e377-4663-86dd-042d6218c31f 78970970ad770218008f28ed487b87fc {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor"} -C3N-00556.MethArray.Red.A C3N-00556 LUAD Methylation_Array tissue_normal CPT0090720009 203027390040_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 f62df62e-db1a-4ba4-b1b8-461eb4e96502 a93a39bd9ad012c6ff299afd2aceb116 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.MethArray.Red.T C3N-00556 LUAD Methylation_Array tumor CPT0090700009 202234380094_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cd9b7fab-0864-478f-be51-9180cfe63709 01fa9342696e308845d2325ea0f0c13b {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor"} -C3N-00556.miRNA-Seq.A.hg38 C3N-00556 LUAD miRNA-Seq tissue_normal CPT0090720006 1120b1cd-95aa-4daa-86a8-db557109f852_mirnaseq_gdc_realn.bam 224845280 BAM harmonized CPTAC3 b13ab653-1138-4e48-9670-ba8985693ff2 766f1d930b84901a7ed55f90f0fcb954 {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.miRNA-Seq.S47_L003_R1.T C3N-00556 LUAD miRNA-Seq tumor CPT0090700006 181119_UNC31-K00269_0165_AH27WCBBXY_GAGTGG_S47_L003_R1_001.unaln.bam 196535694 BAM S47_L003_R1 unaligned CPTAC3 c53b9b21-5b84-40d9-b267-04175e79b93c b87193d858ea26563021d438e77619a0 {"aliquot_tag": "ALQ_f3eed16b", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00556.miRNA-Seq.S7_L005_R1.A C3N-00556 LUAD miRNA-Seq tissue_normal CPT0090720006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L005_R1_001.unaln.bam 200018488 BAM S7_L005_R1 unaligned CPTAC3 86b6da91-a7c8-460b-a0d9-6488e5d4a729 2a934695bea5b2b42caed89d1f5cb1da {"aliquot_tag": "ALQ_892e820b", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.miRNA-Seq.T.hg38 C3N-00556 LUAD miRNA-Seq tumor CPT0090700006 e304251e-650c-4d99-8265-64fd84f5e9e1_mirnaseq_gdc_realn.bam 213316224 BAM harmonized CPTAC3 0f671e51-df47-4e2b-b779-3ed0c917163c e14d5a3dbf00b516d6a27abb45bb0e4a {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor"} -C3N-00556.RNA-Seq.chimeric.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.chimeric.gdc_realn.bam 76983738 BAM chimeric harmonized CPTAC3 448838e2-2805-4f6b-9c82-8d8e9dd2e513 7f04aa302d7deb46e9fab45c28658574 {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.RNA-Seq.chimeric.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.chimeric.gdc_realn.bam 189455309 BAM chimeric harmonized CPTAC3 25ca107e-ed68-45e0-9b5b-2fd357bc8b6a 4f462e7a071fd497734fbcdc12839cc4 {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor"} -C3N-00556.RNA-Seq.genomic.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.genomic.gdc_realn.bam 7581510794 BAM genomic harmonized CPTAC3 0f33d1ed-eaf0-413d-8c7c-f0b863f99cb7 9043584f70aeb5ace73eda73d0214105 {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.RNA-Seq.genomic.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.genomic.gdc_realn.bam 9521617056 BAM genomic harmonized CPTAC3 1151bc78-8658-429d-8e61-3558e42ffa6a 3258edd8ce1b94c98bc90222999fc011 {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor"} -C3N-00556.RNA-Seq.S12_L004_R1.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4275556766 FASTQ S12_L004_R1 unaligned CPTAC3 be53b4b8-e3eb-41a4-86ef-2f8062932be9 90260db4febc28e0b30007004cd2bdc3 {"aliquot_tag": "ALQ_f3eed16b", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00556.RNA-Seq.S12_L004_R2.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4761788101 FASTQ S12_L004_R2 unaligned CPTAC3 911a1ff5-72f1-4336-8d5a-99f5eaf37537 f5681da3403d3926e607e67cf6cc1247 {"aliquot_tag": "ALQ_f3eed16b", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00556.RNA-Seq.S14_L004_R1.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R1_001.fastq.gz 3727621382 FASTQ S14_L004_R1 unaligned CPTAC3 bb0080ab-f7a2-4cf2-ba90-f7572bee1ef0 4fc4216ed2b79ca690751e8018395e31 {"aliquot_tag": "ALQ_892e820b", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.RNA-Seq.S14_L004_R2.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R2_001.fastq.gz 3981356048 FASTQ S14_L004_R2 unaligned CPTAC3 6b241235-a041-45e9-a300-c68d3d1b8898 3cb27f40e0386deed8f1c4f1758d9007 {"aliquot_tag": "ALQ_892e820b", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.RNA-Seq.transcriptome.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.transcriptome.gdc_realn.bam 8464616100 BAM transcriptome harmonized CPTAC3 2a876d2c-2542-4f0b-bf2f-93c4bf97587e accc3f31eed55ca4cdadf67dab6d8fca {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.RNA-Seq.transcriptome.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.transcriptome.gdc_realn.bam 11520685178 BAM transcriptome harmonized CPTAC3 a28d1f9b-cfde-4bff-b437-c9b9e0ea6896 e4bdbae05538e8a8607159b3bdba6754 {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor"} -C3N-00556.WGS.A C3N-00556 LUAD WGS tissue_normal CPT0090720009 CPT0090720009.WholeGenome.RP-1303.bam 58317699130 BAM aligned CPTAC3 fb14a2ea-3eaa-496c-8bd6-18b2533783c2 4769b440741ca68685997626cdfd889a {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.WGS.A.hg38 C3N-00556 LUAD WGS tissue_normal CPT0090720009 d9194d74-2daa-4404-80b7-79fbd4ec2ba1_wgs_gdc_realn.bam 85911873931 BAM harmonized CPTAC3 120fbc7e-c843-483a-95c0-953f3fca0c2f 588f00ba67015391b1aef7bd5f178929 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.WGS.N C3N-00556 LUAD WGS blood_normal CPT0090800002 CPT0090800002.WholeGenome.RP-1303.bam 63279552729 BAM aligned CPTAC3 b277a958-6f3c-4aae-8beb-b7d78f89b31b 9ecee01496e68af236734899e94ebc63 {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00556.WGS.N.hg38 C3N-00556 LUAD WGS blood_normal CPT0090800002 b0e167ba-7294-454e-bb50-8924f1495898_wgs_gdc_realn.bam 94439292998 BAM harmonized CPTAC3 b7a4651a-a059-4b4e-955f-f94e03509855 d405532f854058e052b72d0dcfab24fd {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00556.WGS.T C3N-00556 LUAD WGS tumor CPT0090700009 CPT0090700009.WholeGenome.RP-1303.bam 65327480044 BAM aligned CPTAC3 dc6a2458-14b1-4e9b-808f-16b961d722b3 1dd03349e26db4f454553330688b8f74 {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor"} -C3N-00556.WGS.T.hg38 C3N-00556 LUAD WGS tumor CPT0090700009 03737151-19b0-46c6-a74d-cdc16b25f2cb_wgs_gdc_realn.bam 96817508581 BAM harmonized CPTAC3 8c103a65-5a60-4335-9cf0-651614b6a4e2 c1eeebddfa49d32a304ff93218fbdd14 {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor"} -C3N-00556.WXS.A C3N-00556 LUAD WXS tissue_normal CPT0090720009 CPT0090720009.WholeExome.RP-1303.bam 37921738244 BAM aligned CPTAC3 cf1a6e46-9778-42b9-8fb2-213ac104c2c8 464a31c1c358fe6a8bbfd1bc986dd8a5 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.WXS.A.hg38 C3N-00556 LUAD WXS tissue_normal CPT0090720009 d9194d74-2daa-4404-80b7-79fbd4ec2ba1_wxs_gdc_realn.bam 51119609551 BAM harmonized CPTAC3 a8ff62af-e125-4e22-8ae7-b048d02e814c e449bcb25776995df02f34e4e197bcc6 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00556.WXS.N C3N-00556 LUAD WXS blood_normal CPT0090800002 CPT0090800002.WholeExome.RP-1303.bam 35803406649 BAM aligned CPTAC3 9bd493da-de76-4bc7-8d41-c33cf271310b a91ab22207b2e3d2540f8b49fcdd50d9 {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00556.WXS.N.hg38 C3N-00556 LUAD WXS blood_normal CPT0090800002 b0e167ba-7294-454e-bb50-8924f1495898_wxs_gdc_realn.bam 47398009746 BAM harmonized CPTAC3 5018bc92-4cf5-417b-bef0-9cd7e12436cf cf8d2366def0d4a3013993a421b3dd0e {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00556.WXS.T C3N-00556 LUAD WXS tumor CPT0090700009 CPT0090700009.WholeExome.RP-1303.bam 28587805209 BAM aligned CPTAC3 d065073f-6241-4d02-8a5f-1f59d0ab2c63 2489080bcfb075e3b55eef2adbe83a12 {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor"} -C3N-00556.WXS.T.hg38 C3N-00556 LUAD WXS tumor CPT0090700009 03737151-19b0-46c6-a74d-cdc16b25f2cb_wxs_gdc_realn.bam 39235543242 BAM harmonized CPTAC3 8b7336d8-4946-4a96-bff9-5ba516019f15 526f9342e45c38a1f6c0bb32d76698fa {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor"} -C3N-00559.MethArray.Green.A C3N-00559 LUAD Methylation_Array tissue_normal CPT0068650009 203028200093_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8570fa01-d56e-4805-9527-2dcd4c21424a 0a3b70c2dc7f2d2938a460206cf4fb32 {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.MethArray.Green.T C3N-00559 LUAD Methylation_Array tumor CPT0068610009 202176290046_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 607cb6ce-fb7c-4429-a6e4-4d60eb00fbd7 dff3030d550f32a4c72ec89c00dc0a3a {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor"} -C3N-00559.MethArray.Red.A C3N-00559 LUAD Methylation_Array tissue_normal CPT0068650009 203028200093_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 225f8e89-643e-4033-aa98-eed7a20270d7 5f81b02697fb66576f926354e719b327 {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.MethArray.Red.T C3N-00559 LUAD Methylation_Array tumor CPT0068610009 202176290046_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 7ceb0e1f-4b48-496f-b94c-18ad4fa4fb06 e204588555219b1c36b446ab15dc3e13 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor"} -C3N-00559.miRNA-Seq.A.hg38 C3N-00559 LUAD miRNA-Seq tissue_normal CPT0068650006 ed1c5ccb-b922-49c7-ae22-09e437596f3a_mirnaseq_gdc_realn.bam 217868983 BAM harmonized CPTAC3 3a9cdb02-9408-426e-a94c-e54cdb76910b fe594d40890cc003ddfb0af7bedbba77 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.miRNA-Seq.S34_L007_R1.T C3N-00559 LUAD miRNA-Seq tumor CPT0068610006 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L007_R1_001.unaln.bam 246231724 BAM S34_L007_R1 unaligned CPTAC3 ed7fbe3b-67e3-4f8f-a9de-df276c92667b bf2623ff55c4af4313cb53c094f4c4a0 {"aliquot_tag": "ALQ_ef1d77b5", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00559.miRNA-Seq.S46_L008_R1.A C3N-00559 LUAD miRNA-Seq tissue_normal CPT0068650006 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L008_R1_001.unaln.bam 194689645 BAM S46_L008_R1 unaligned CPTAC3 4069ae0a-4c07-4d14-a581-2be84b054edb f4bdee938180fde9e06cf5385d4ea29f {"aliquot_tag": "ALQ_1a9dd175", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.miRNA-Seq.T.hg38 C3N-00559 LUAD miRNA-Seq tumor CPT0068610006 7f2b8065-6a58-4035-986e-00388244d9c8_mirnaseq_gdc_realn.bam 261630983 BAM harmonized CPTAC3 cf519ce2-5fa2-48f5-9e00-b87f8e316d99 7527eb606eb429a788a8b08c1c8b269a {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor"} -C3N-00559.RNA-Seq.chimeric.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.chimeric.gdc_realn.bam 119268643 BAM chimeric harmonized CPTAC3 25376980-45f8-42f9-8ec6-fc97481eb572 b1f926950e871bb24d89b288e08780e2 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.RNA-Seq.chimeric.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.chimeric.gdc_realn.bam 179623357 BAM chimeric harmonized CPTAC3 f59c8d4e-da8a-4c58-b864-d290b533975f 05aaed4ac7f88f46d1bbbfbaefc3c1e9 {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor"} -C3N-00559.RNA-Seq.genomic.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.genomic.gdc_realn.bam 9022437638 BAM genomic harmonized CPTAC3 f40ec376-0bf3-4500-969f-c2485375a5f8 28aa5aa4573ea8fced852ad762af82f8 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.RNA-Seq.genomic.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.genomic.gdc_realn.bam 8214519587 BAM genomic harmonized CPTAC3 7e10c912-2d98-4dec-95e6-2f2d8ac44f42 df274e310881a9e89aac93bc32666af5 {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor"} -C3N-00559.RNA-Seq.S1_L007_R1.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R1_001.fastq.gz 4004706735 FASTQ S1_L007_R1 unaligned CPTAC3 8e6188ee-81c8-435f-a71b-b8608e15a768 4a8ba3cf38d71121524c9b8e7c5fb7df {"aliquot_tag": "ALQ_1a9dd175", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.RNA-Seq.S1_L007_R2.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R2_001.fastq.gz 4396700968 FASTQ S1_L007_R2 unaligned CPTAC3 40f2783e-a257-4a4c-ac79-c0c4b885ad4e 6f344cf30bad924f122716377f3daa1c {"aliquot_tag": "ALQ_1a9dd175", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.RNA-Seq.S22_L007_R1.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R1_001.fastq.gz 4053687904 FASTQ S22_L007_R1 unaligned CPTAC3 35ac3e77-6860-42e8-a022-cb2889c74118 f25151a2d9a4fcbf9735da27a3c6b281 {"aliquot_tag": "ALQ_ef1d77b5", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00559.RNA-Seq.S22_L007_R2.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R2_001.fastq.gz 4373524532 FASTQ S22_L007_R2 unaligned CPTAC3 92fffc3f-b951-4bc5-acf4-dade2089fa7f 19cb370f4046a8e576c89e43b513797e {"aliquot_tag": "ALQ_ef1d77b5", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00559.RNA-Seq.transcriptome.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.transcriptome.gdc_realn.bam 8899432370 BAM transcriptome harmonized CPTAC3 98c384b0-1a03-46e2-81b1-ebf61fa812c1 77720e0cf4ca98ae0b33e3bf4a3a42d1 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.RNA-Seq.transcriptome.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.transcriptome.gdc_realn.bam 9187519192 BAM transcriptome harmonized CPTAC3 87fe33c2-8c74-4fff-8e89-d979fb286f1d ee60ee8f05a67963fbf7b5e4a53d1a1e {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor"} -C3N-00559.WGS.A C3N-00559 LUAD WGS tissue_normal CPT0068650009 CPT0068650009.WholeGenome.RP-1303.bam 59112722658 BAM aligned CPTAC3 50e50514-c147-48e7-afea-64a98bbee984 3d8d38f56d904f02d8fe416cadb97b1f {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.WGS.A.hg38 C3N-00559 LUAD WGS tissue_normal CPT0068650009 69d53528-e5a2-4223-8504-be61bb8daad5_wgs_gdc_realn.bam 89645944717 BAM harmonized CPTAC3 0f85744b-96cf-4ef8-aabe-464f7fdddc82 1cd52154c4fbc3761c24c2b1c3d871ca {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.WGS.N C3N-00559 LUAD WGS blood_normal CPT0068730002 CPT0068730002.WholeGenome.RP-1303.bam 75937411224 BAM aligned CPTAC3 92f3e7ed-560c-46d2-a2a5-9548a2376d6e ebb657acf7aff7dbabafdf3b0d344dae {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal"} -C3N-00559.WGS.N.hg38 C3N-00559 LUAD WGS blood_normal CPT0068730002 7685dda3-cc9a-4907-af73-acc21efc3583_gdc_realn.bam 114031657078 BAM harmonized CPTAC3 03d6029d-2a50-440e-9dc5-1799daed8b8f 0095fe41040e4b98a4e597b040d8372d {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal"} -C3N-00559.WGS.T C3N-00559 LUAD WGS tumor CPT0068610009 CPT0068610009.WholeGenome.RP-1303.bam 87840611066 BAM aligned CPTAC3 5590fbb1-288b-4e5a-9680-1023d9761dd2 2b4a93b7988ebadccf917ebd1c58c908 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor"} -C3N-00559.WGS.T.hg38 C3N-00559 LUAD WGS tumor CPT0068610009 65bfd2f9-61ca-429d-943c-2d0989e04e6b_gdc_realn.bam 130518646424 BAM harmonized CPTAC3 0b19485a-7afb-48dd-b2ca-1e2dc3cdf1aa 59522353bf0a10ea1692f6be2d015fa9 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor"} -C3N-00559.WXS.A C3N-00559 LUAD WXS tissue_normal CPT0068650009 CPT0068650009.WholeExome.RP-1303.bam 29679144929 BAM aligned CPTAC3 bc69a84e-4e09-417e-9531-6bb079a0f3e2 6101287d58629ce47073e670a411ae94 {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.WXS.A.hg38 C3N-00559 LUAD WXS tissue_normal CPT0068650009 69d53528-e5a2-4223-8504-be61bb8daad5_wxs_gdc_realn.bam 40944868022 BAM harmonized CPTAC3 b2a51d3c-c4f3-47a8-92dc-19a20cb01217 480c62f80b903c0e92882f18be5aa42a {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00559.WXS.N C3N-00559 LUAD WXS blood_normal CPT0068730002 CPT0068730002.WholeExome.RP-1303.bam 34788274835 BAM aligned CPTAC3 f40a1574-c485-4960-8aa6-86fdb200145e e36a6936a0fac28107b37b5356ca44f1 {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal"} -C3N-00559.WXS.N.hg38 C3N-00559 LUAD WXS blood_normal CPT0068730002 7685dda3-cc9a-4907-af73-acc21efc3583_gdc_realn.bam 47945600076 BAM harmonized CPTAC3 7ec50742-f1e3-4b2b-b681-f676f17c3e47 b980d74c8e015a5cff48eabf3dde12bc {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal"} -C3N-00559.WXS.T C3N-00559 LUAD WXS tumor CPT0068610009 CPT0068610009.WholeExome.RP-1303.bam 51334658480 BAM aligned CPTAC3 9d84def2-9572-4634-9b3e-6e69f36c2b9e c65cee5ec049cf5b3a7ea44f50ea553b {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor"} -C3N-00559.WXS.T.hg38 C3N-00559 LUAD WXS tumor CPT0068610009 65bfd2f9-61ca-429d-943c-2d0989e04e6b_gdc_realn.bam 70598826119 BAM harmonized CPTAC3 3be352f5-36d2-4123-ab6d-b4d416b82fb2 98a2d7646f1a10bd2d318d1135b69b41 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor"} -C3N-00560.MethArray.Green.A C3N-00560 LUAD Methylation_Array tissue_normal CPT0068830009 203027390028_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a5f181f7-2309-4904-87ab-366a20d6f6e5 b59e0d16a3899abf6edc364db92b1641 {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.MethArray.Green.T C3N-00560 LUAD Methylation_Array tumor CPT0068800006 202184990057_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2b67d971-22dc-4f08-a18c-8c24ab9e7401 38f1fdcf03f26cbcd009b88cb2bc3c00 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00560.MethArray.Red.A C3N-00560 LUAD Methylation_Array tissue_normal CPT0068830009 203027390028_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 78816cf8-f183-438a-b634-9bd5c2d41b56 b834d5fd30ba3d1e874656d7b151738b {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.MethArray.Red.T C3N-00560 LUAD Methylation_Array tumor CPT0068800006 202184990057_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 362af513-c33d-446c-980e-f066785a8e7e f991c0aee492d8735f5ddb5d647fd1ac {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00560.miRNA-Seq.A.hg38 C3N-00560 LUAD miRNA-Seq tissue_normal CPT0068830006 fcac68e7-15d3-401d-89f0-53ea2322eb9f_mirnaseq_gdc_realn.bam 254328288 BAM harmonized CPTAC3 e81164dd-a046-4e69-b47a-8f239f4f9fda 28c825ec1cd211685c826223fd63a790 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.miRNA-Seq.S45_L005_R1.T C3N-00560 LUAD miRNA-Seq tumor CPT0068800009 181119_UNC31-K00269_0165_AH27WCBBXY_GTTTCG_S45_L005_R1_001.unaln.bam 217548017 BAM S45_L005_R1 unaligned CPTAC3 b23e5ada-470b-4542-8b58-d377d7b8b1b7 500742a16c71095edb97e40d2d15669e {"aliquot_tag": "ALQ_78c822e4", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00560.miRNA-Seq.S47_L007_R1.A C3N-00560 LUAD miRNA-Seq tissue_normal CPT0068830006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L007_R1_001.unaln.bam 229378323 BAM S47_L007_R1 unaligned CPTAC3 d7c5598e-100c-4a64-a064-ad6f6b15747f 7b4a09b4c1c4f57d64ed6ec1780b2e5c {"aliquot_tag": "ALQ_afd745a5", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.miRNA-Seq.T.hg38 C3N-00560 LUAD miRNA-Seq tumor CPT0068800009 7918ebab-4d6b-4fc2-a19e-4292608ea22a_mirnaseq_gdc_realn.bam 239298777 BAM harmonized CPTAC3 fc44dd4c-d6ee-46e1-af9e-cb38bc9890a6 56c45decf999e195bbcc4990530900ae {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor"} -C3N-00560.RNA-Seq.chimeric.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.chimeric.gdc_realn.bam 157084628 BAM chimeric harmonized CPTAC3 e9db2c42-b5fb-47e2-b60f-c1d2bbc0adbd 92714b1db185040d69bb21a083da0bc5 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.RNA-Seq.chimeric.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.chimeric.gdc_realn.bam 27472325 BAM chimeric harmonized CPTAC3 87bc9b84-8826-4c41-a6fb-63a017552e44 7f1d58f357aeb41f1accc10df82f857e {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor"} -C3N-00560.RNA-Seq.genomic.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.genomic.gdc_realn.bam 8765917970 BAM genomic harmonized CPTAC3 1c1b0f0d-d739-4d51-85a7-85aa3301bb8d b7dc10b781d480cf01f5dc473de55e00 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.RNA-Seq.genomic.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.genomic.gdc_realn.bam 7636550362 BAM genomic harmonized CPTAC3 877414cc-b7f4-4802-a5c7-4d966ad11471 6999c545d551142457d4404c39d42b28 {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor"} -C3N-00560.RNA-Seq.S16_L004_R1.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3766620353 FASTQ S16_L004_R1 unaligned CPTAC3 46bd0f61-6336-4718-87c9-4321fca9d1c7 5b766036e12d20568365d46d377e5491 {"aliquot_tag": "ALQ_78c822e4", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00560.RNA-Seq.S16_L004_R2.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R2_001.fastq.gz 3962085780 FASTQ S16_L004_R2 unaligned CPTAC3 f9f777c8-4adc-4d33-a1af-586195c51863 367502574bb9e82528f100bacedb682c {"aliquot_tag": "ALQ_78c822e4", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00560.RNA-Seq.S4_L007_R1.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R1_001.fastq.gz 4108649064 FASTQ S4_L007_R1 unaligned CPTAC3 bb38f2f8-49b4-452c-a46c-1225fa3c06bc a6ad770a1a8085b6dbfee41049feb71a {"aliquot_tag": "ALQ_afd745a5", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.RNA-Seq.S4_L007_R2.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R2_001.fastq.gz 4490060201 FASTQ S4_L007_R2 unaligned CPTAC3 3702c568-757a-4c5f-824d-60f359a3e47a 72b27fe82536d822f361a689a541ee23 {"aliquot_tag": "ALQ_afd745a5", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.RNA-Seq.transcriptome.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.transcriptome.gdc_realn.bam 10139949654 BAM transcriptome harmonized CPTAC3 ec96ca67-c315-449a-b408-1fdf1ff3a8f2 5ef3fa029409825eb9c2cb91e388db93 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.RNA-Seq.transcriptome.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.transcriptome.gdc_realn.bam 10692603673 BAM transcriptome harmonized CPTAC3 e152add2-e9a0-494d-b7ea-82c460e6c3d7 19137fcd71d7c330b2585f207d94fc91 {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor"} -C3N-00560.Targeted.T C3N-00560 LUAD Targeted_Sequencing tumor CPT0068800006 CPT0068800006.CustomSelection.RP-1303.PDO-18786.bam 4019311723 BAM aligned CPTAC3 2c5f8866-5e5f-4715-9ea9-9bc7c611b436 506a39fc58756128b7977bb2e230de8e {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00560.Targeted.T.hg38 C3N-00560 LUAD Targeted_Sequencing tumor CPT0068800006 5cc34d69-b52a-41a7-bf06-e5d2bce79815_targetedsequencing_gdc_realn.bam 5604339593 BAM harmonized CPTAC3 1201e49a-0a06-4510-bca1-01cf97f31de3 a4a2dc8d14088417477766a9b83a85e5 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00560.WGS.A C3N-00560 LUAD WGS tissue_normal CPT0068830009 CPT0068830009.WholeGenome.RP-1303.bam 53735348223 BAM aligned CPTAC3 a2167dd6-f503-4d7c-9237-d97dfd2cb759 c45f4ea67f19b12668ca7b141a5ae747 {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.WGS.A.hg38 C3N-00560 LUAD WGS tissue_normal CPT0068830009 caf79275-5bf0-4f8a-9467-4ac0fa42ab41_wgs_gdc_realn.bam 78758999741 BAM harmonized CPTAC3 1bb32722-76cf-48ca-9b63-afc27bfea961 4cedbaafcbb4dcf29d5e81941bc5fece {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.WGS.N C3N-00560 LUAD WGS blood_normal CPT0068910002 CPT0068910002.WholeGenome.RP-1303.bam 75830719033 BAM aligned CPTAC3 1243d38a-2e75-4377-82e7-ecf5fa2210f0 3b53c1252bf3afd1169cf8c58d7c66fb {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal"} -C3N-00560.WGS.N.hg38 C3N-00560 LUAD WGS blood_normal CPT0068910002 4bf3027a-6c8c-4b4c-9fe9-9b9b9010d877_gdc_realn.bam 114554301344 BAM harmonized CPTAC3 7f806b1f-28d1-42a7-b1f7-0becce284c16 954c7339963cf0120db4fb9e19cca5fc {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal"} -C3N-00560.WGS.T C3N-00560 LUAD WGS tumor CPT0068800006 CPT0068800006.WholeGenome.RP-1303.bam 72783914458 BAM aligned CPTAC3 60fa2f2b-328e-4417-b042-800af86bdd4e 9755e0773b1eda6b16ec2df2459d4b69 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00560.WGS.T.hg38 C3N-00560 LUAD WGS tumor CPT0068800006 5cc34d69-b52a-41a7-bf06-e5d2bce79815_gdc_realn.bam 109072923843 BAM harmonized CPTAC3 9265e351-74cb-49a8-9169-be03ce3add75 a9a74825eb13f330ba337aacf34d05cc {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00560.WXS.A C3N-00560 LUAD WXS tissue_normal CPT0068830009 CPT0068830009.WholeExome.RP-1303.bam 39016462855 BAM aligned CPTAC3 50e111be-2dec-430f-997d-8c68443219e9 1761b85536e374554f75ba5e35ba7e9b {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.WXS.A.hg38 C3N-00560 LUAD WXS tissue_normal CPT0068830009 caf79275-5bf0-4f8a-9467-4ac0fa42ab41_wxs_gdc_realn.bam 54106976681 BAM harmonized CPTAC3 d246405b-ef7e-422c-b5ce-7057da700d82 b33cbc45f209ff6aa5556e185ccb8b64 {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00560.WXS.N C3N-00560 LUAD WXS blood_normal CPT0068910002 CPT0068910002.WholeExome.RP-1303.bam 31510208896 BAM aligned CPTAC3 f4f2fc61-f653-4952-b7d3-55c279b16d96 29d9c49b2d80640c90cd2ef911359cfb {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal"} -C3N-00560.WXS.N.hg38 C3N-00560 LUAD WXS blood_normal CPT0068910002 4bf3027a-6c8c-4b4c-9fe9-9b9b9010d877_gdc_realn.bam 43028891230 BAM harmonized CPTAC3 accd545e-f33e-4ad8-9a31-1249a5a51290 6aa8c773c3e36f3a6fd69a612f470a0f {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal"} -C3N-00560.WXS.T C3N-00560 LUAD WXS tumor CPT0068800006 CPT0068800006.WholeExome.RP-1303.bam 31830009366 BAM aligned CPTAC3 a5a33c81-01bd-4877-8ae4-7c993da8beb1 d4dc791351a0cff3ec65e0ad8b5307c3 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00560.WXS.T.hg38 C3N-00560 LUAD WXS tumor CPT0068800006 5cc34d69-b52a-41a7-bf06-e5d2bce79815_gdc_realn.bam 43225649586 BAM harmonized CPTAC3 8986d3b8-c817-4f96-a9e3-3842719e0735 752bc62fe032cad0e8e1dc5c6ed5cdaa {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor"} -C3N-00572.MethArray.Green.A C3N-00572 LUAD Methylation_Array tissue_normal CPT0015420009 203027390081_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e7e2ec0-a1a4-4e99-8d4e-c7b4ca89d7b7 4dbf23c4662299d5e2483805b859a5d4 {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.MethArray.Green.T C3N-00572 LUAD Methylation_Array tumor CPT0015410009 202184990063_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 18879d62-0793-4957-8a39-723523c1ce19 8374036d93dde2859437b79cf4b03e18 {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor"} -C3N-00572.MethArray.Red.A C3N-00572 LUAD Methylation_Array tissue_normal CPT0015420009 203027390081_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 8c3919cc-f5d5-4d92-9758-49f99255b571 cdcbd21b3c6aefb92b17b96bf58507cc {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.MethArray.Red.T C3N-00572 LUAD Methylation_Array tumor CPT0015410009 202184990063_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 30b7b94b-97ee-49b2-995a-a4e1a2a5e443 12acf670b5e90b60152f56733694962b {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor"} -C3N-00572.miRNA-Seq.A.hg38 C3N-00572 LUAD miRNA-Seq tissue_normal CPT0015420006 1ba9ebfe-3899-4f6c-b63d-c1e1589d53ab_mirnaseq_gdc_realn.bam 301564600 BAM harmonized CPTAC3 5e070422-8d39-4967-8122-697331c4ad28 f3529a8d1950e273ecde691064a19e83 {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.miRNA-Seq.S1_L003_R1.T C3N-00572 LUAD miRNA-Seq tumor CPT0015410006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L003_R1_001.unaln.bam 224652129 BAM S1_L003_R1 unaligned CPTAC3 7a4b6622-b155-4c8e-9ebc-7d5700f8ca1d a8062abebe175a11ad5968b982f951b3 {"aliquot_tag": "ALQ_c9c7be67", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00572.miRNA-Seq.S39_L002_R1.A C3N-00572 LUAD miRNA-Seq tissue_normal CPT0015420006 181108_UNC31-K00269_0163_BH23TVBBXY_CTATAC_S39_L002_R1_001.unaln.bam 263683204 BAM S39_L002_R1 unaligned CPTAC3 ad3a1d84-3031-4340-b552-02147c92037b add2b4868972621bdb0b2f46f1d2ea5f {"aliquot_tag": "ALQ_8e67c4b7", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.miRNA-Seq.T.hg38 C3N-00572 LUAD miRNA-Seq tumor CPT0015410006 a8b1dd01-2e94-4b84-a9c2-2ad495f2ecf4_mirnaseq_gdc_realn.bam 242021283 BAM harmonized CPTAC3 2e8b8488-9cb8-4e0b-8563-3f539f79ef41 8e961e3d280305872653fa9d64faf5f6 {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor"} -C3N-00572.RNA-Seq.chimeric.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.chimeric.gdc_realn.bam 37603214 BAM chimeric harmonized CPTAC3 8bc2f3db-0009-4cfd-ba13-e5f162472e28 c26adf7de39ec3e4191b8564e6c610d2 {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.RNA-Seq.chimeric.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.chimeric.gdc_realn.bam 52234049 BAM chimeric harmonized CPTAC3 74c870b4-0a47-488b-baae-6339ff118208 c25791462e140779a52df7e6033f00df {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor"} -C3N-00572.RNA-Seq.genomic.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.genomic.gdc_realn.bam 5862977929 BAM genomic harmonized CPTAC3 e70b66ef-c7a5-47e5-940c-230d917ba77b c18a9c3e0e31b0c1114f973cb3659a7c {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.RNA-Seq.genomic.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.genomic.gdc_realn.bam 8333243935 BAM genomic harmonized CPTAC3 b4a1adbd-50ac-44b6-b8af-d361486715a3 5865b03edf0243a84b1e57bac7a4674a {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor"} -C3N-00572.RNA-Seq.S20_L006_R1.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3050852055 FASTQ S20_L006_R1 unaligned CPTAC3 59abf2ce-a0c0-4e7d-a98c-a08a1b9943cc 39f9aa0b02e056f52b51dc1adf7c957d {"aliquot_tag": "ALQ_8e67c4b7", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.RNA-Seq.S20_L006_R2.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3236795328 FASTQ S20_L006_R2 unaligned CPTAC3 6ea15efc-a8d7-4099-922d-fc62d572aeab 7531f65326c093448c8f6ea972b4e464 {"aliquot_tag": "ALQ_8e67c4b7", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.RNA-Seq.S3_L001_R1.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R1_001.fastq.gz 3756268296 FASTQ S3_L001_R1 unaligned CPTAC3 2ef79d70-28f8-4ec8-bbff-4ba04ac34831 5ec0f27cf71d7856a536b67f89575c4f {"aliquot_tag": "ALQ_c9c7be67", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00572.RNA-Seq.S3_L001_R2.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R2_001.fastq.gz 4279080356 FASTQ S3_L001_R2 unaligned CPTAC3 57f41a92-2a2b-4673-b1d5-3f2a298dd09f a19b6372a09c815d56da41dc9a07bbf4 {"aliquot_tag": "ALQ_c9c7be67", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00572.RNA-Seq.transcriptome.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.transcriptome.gdc_realn.bam 7262801407 BAM transcriptome harmonized CPTAC3 ab17b5a6-4fd7-4c95-be66-c68d36fae82c 6dde7e793d7fb264cbf136b1367213f8 {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.RNA-Seq.transcriptome.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.transcriptome.gdc_realn.bam 12930714956 BAM transcriptome harmonized CPTAC3 dcb0d079-ea4a-4926-8bea-e67156166e54 09f54a5c8f1f482eb6bbcd6d2e03dcc4 {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor"} -C3N-00572.WGS.A C3N-00572 LUAD WGS tissue_normal CPT0015420009 CPT0015420009.WholeGenome.RP-1303.bam 59327386080 BAM aligned CPTAC3 536c12e1-44a2-4ed2-b81d-2a9fab6202d7 bd43c5c2ff4204da8315a9f6ce9324af {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.WGS.A.hg38 C3N-00572 LUAD WGS tissue_normal CPT0015420009 8b5f7f24-c316-4b44-a5c9-bd5c73c35489_wgs_gdc_realn.bam 88422268425 BAM harmonized CPTAC3 18b12454-d5fc-4292-aad0-39508e5a064a 0218598a7723f0f67739c0eec0679eb0 {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.WGS.N C3N-00572 LUAD WGS blood_normal CPT0015440002 CPT0015440002.WholeGenome.RP-1303.bam 60261192699 BAM aligned CPTAC3 7d182f8c-21fd-44a8-83b8-b9ea8f85fa1a 66983e4ca3f3efde74422d10d4f5c58f {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00572.WGS.N.hg38 C3N-00572 LUAD WGS blood_normal CPT0015440002 64935647-17f9-43a7-9874-6b6c3ea6e74f_gdc_realn.bam 89844867590 BAM harmonized CPTAC3 653c7eba-d11a-484c-a1be-165489cc1f0c 107b5b6fee9ea698b6fdb84d9a069f0f {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00572.WGS.T C3N-00572 LUAD WGS tumor CPT0015410009 CPT0015410009.WholeGenome.RP-1303.bam 69546385840 BAM aligned CPTAC3 637d9321-a062-4788-b2ba-c55e97c1d856 51ff906303b518f7d23892e353a77b9f {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor"} -C3N-00572.WGS.T.hg38 C3N-00572 LUAD WGS tumor CPT0015410009 16e085ef-aa13-4d9e-ad84-45d2fae7e8d6_gdc_realn.bam 101955360691 BAM harmonized CPTAC3 041b9b07-2687-46f8-9e97-f3eacaec0e3e 633a93c10bfa596251bd0c719f37fb4e {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor"} -C3N-00572.WXS.A C3N-00572 LUAD WXS tissue_normal CPT0015420009 CPT0015420009.WholeExome.RP-1303.bam 40148430253 BAM aligned CPTAC3 781993e5-2752-400b-8dd8-c0a53843ce25 4f05e47cadebb46ebcacb190458f533e {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.WXS.A.hg38 C3N-00572 LUAD WXS tissue_normal CPT0015420009 8b5f7f24-c316-4b44-a5c9-bd5c73c35489_wxs_gdc_realn.bam 54076734396 BAM harmonized CPTAC3 b62351ca-071f-4a62-90bb-761b2056e392 0ecc776aae585912213bf9426ef85c09 {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00572.WXS.N C3N-00572 LUAD WXS blood_normal CPT0015440002 CPT0015440002.WholeExome.RP-1303.bam 43747203387 BAM aligned CPTAC3 65294c36-1eff-4e4f-93bf-8660fac8b3b5 12e15ab44baf9a55485c7ade7561f7e2 {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00572.WXS.N.hg38 C3N-00572 LUAD WXS blood_normal CPT0015440002 64935647-17f9-43a7-9874-6b6c3ea6e74f_gdc_realn.bam 60474177791 BAM harmonized CPTAC3 c3f65c9a-98de-42e6-a84a-c14713f503a3 73c3299cf0124201d128ea51f31786b1 {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00572.WXS.T C3N-00572 LUAD WXS tumor CPT0015410009 CPT0015410009.WholeExome.RP-1303.bam 32633195718 BAM aligned CPTAC3 da53b0e7-7f5e-465f-b503-beb7b140acbd 8992607861f55b26959dfd4cea193be6 {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor"} -C3N-00572.WXS.T.hg38 C3N-00572 LUAD WXS tumor CPT0015410009 16e085ef-aa13-4d9e-ad84-45d2fae7e8d6_gdc_realn.bam 45222865899 BAM harmonized CPTAC3 47edcd39-594b-4d96-b6c1-4e7332969669 efba569d4dd343116aa1d4e4eeaede38 {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_135ba711.miRNA-Seq.S27_L002_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068980006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L002_R1_001.unaln.bam 206638144 BAM S27_L002_R1 unaligned CPTAC3 626dbb1b-5aaf-46c9-91c8-a87e4bf850f8 07a9e5a6b02d4f18a01170ceb7029fc0 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_135ba711.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068980006 873e34c6-3584-4258-9bc6-fbef1657324c_mirnaseq_gdc_realn.bam 231259961 BAM harmonized CPTAC3 270838b9-bdd5-4567-aa9b-3a0318ba1be6 0bd20ac87c91fff83f5cb132591433c0 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_135ba711.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.chimeric.gdc_realn.bam 41687723 BAM chimeric harmonized CPTAC3 dda74de3-85b5-4137-9744-d87531668b2a b9b3d7feec9767c7d2b41c5d09e2aff2 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_135ba711.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.genomic.gdc_realn.bam 9541701012 BAM genomic harmonized CPTAC3 f9451dcb-6572-4aef-8a0d-7dc6fd7628dc c6550108dd0697a36276bea82ab22b6d {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_135ba711.RNA-Seq.S27_L007_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R1_001.fastq.gz 4369383350 FASTQ S27_L007_R1 unaligned CPTAC3 ae9995f9-517f-4e35-9d16-22e57745920e 8ce0dcd08275a0be7453e48a9d9a7e0b {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_135ba711.RNA-Seq.S27_L007_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R2_001.fastq.gz 5154277956 FASTQ S27_L007_R2 unaligned CPTAC3 b5afe562-acc3-4969-938e-993a2c39e70f 75d81a130e01b2fdc145432669fa9572 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_135ba711.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.transcriptome.gdc_realn.bam 13241613661 BAM transcriptome harmonized CPTAC3 a9f13c80-3b8a-4c46-8cf7-516faac4e05c 889203a63ecc9f6c5ba4c2bafad9c5e5 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_1b42d51.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0068970009 204367490061_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 376be524-153c-4c0b-bdc3-a0acc33918b6 8702fc3e3a6b1b45757ccb9b2e6237a1 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_1b42d51.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0068970009 204367490061_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 d16988d3-1431-433e-bd93-b7119ed08b38 4185f2906b64405c8e93e8ad6903ae00 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_1b42d51.WGS.T C3N-00573 CCRCC WGS tumor CPT0068970009 CPT0068970009.WholeGenome.RP-2158.bam 20266913890 BAM aligned CPTAC3 e0309e08-5020-46ee-a3c2-7f3345b773c8 227df651839e09f614a30b0435787ce9 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_1b42d51.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0068970009 8b657200-b398-4044-a396-b99397ce5361_wgs_gdc_realn.bam 60665813092 BAM harmonized CPTAC3 882c7b7c-bf79-430f-9b8a-b9e7812183d2 27a7663f55ed193bdc1433d9cfa74828 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_1b42d51.WXS.T C3N-00573 CCRCC WXS tumor CPT0068970009 CPT0068970009.WholeExome.RP-1303.bam 21881307452 BAM aligned CPTAC3 8e6eed61-850f-4d6e-bc28-89f529d98821 6f3fac59c6f4c594ea941f751b24c47c {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_1b42d51.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0068970009 8b657200-b398-4044-a396-b99397ce5361_wxs_gdc_realn.bam 29602475691 BAM harmonized CPTAC3 de3939e0-f1ba-48c4-ab28-81640d36c4d9 fe3362e5608907cbf0a3c465036d9308 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_2e3b8ea1.miRNA-Seq.S5_L001_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068990006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATTTT_S5_L001_R1_001.unaln.bam 378059132 BAM S5_L001_R1 unaligned CPTAC3 683e0931-e467-4337-8977-a6a3c335e1a1 027a43c361253c9f0ee8c651aaaabe68 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_2e3b8ea1.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068990006 d49dc8bd-4f80-4ee3-8a15-2cc89382a49b_mirnaseq_gdc_realn.bam 420463346 BAM harmonized CPTAC3 f2c052c2-dc36-4a34-8e3a-2ee01a7c8535 2d991d5a67bc49245dfae56370428962 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_2e3b8ea1.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.chimeric.gdc_realn.bam 44668126 BAM chimeric harmonized CPTAC3 cfaf5271-6d19-47ea-b51c-eff7d4c40cc9 dfa5b935473ae8cc2d25475eb4c8c1b7 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_2e3b8ea1.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.genomic.gdc_realn.bam 7807691168 BAM genomic harmonized CPTAC3 ad06f32a-af5c-4642-84f1-57594abbb5fa 65445ad0feeafda88e507d8b72cbbd2b {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_2e3b8ea1.RNA-Seq.S26_L007_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R1_001.fastq.gz 3516400254 FASTQ S26_L007_R1 unaligned CPTAC3 f168df71-22e8-4e93-b119-db33288bca15 2ffe51167c21f3376fa1cdc9e50b4ea3 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_2e3b8ea1.RNA-Seq.S26_L007_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R2_001.fastq.gz 4046510456 FASTQ S26_L007_R2 unaligned CPTAC3 acaeeb63-695e-4f7d-81a7-8bd834514232 b2dd6cc7e0a099d74a0e30174a28006e {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_2e3b8ea1.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.transcriptome.gdc_realn.bam 10144924619 BAM transcriptome harmonized CPTAC3 ff003744-94e3-4cf5-8e55-dc56cb2214d9 9281ba8d27aa1a55477a0878222e0391 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_83e4ba80.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0068980009 204372030090_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 13009711-db7e-46d9-a510-41fdad6b335c 9a6bcc2f9c16a836b2d7134c7448b50a {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_83e4ba80.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0068980009 204372030090_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 c6009b48-a095-4bb9-a8eb-81611d337c48 e2eb21e72e1f6700beef26ece36f11fa {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_83e4ba80.WGS.T C3N-00573 CCRCC WGS tumor CPT0068980009 CPT0068980009.WholeGenome.RP-2158.bam 19753056180 BAM aligned CPTAC3 50e05b09-5405-4142-828d-af5b2ab4f1e0 33c0b981bfb44cf7058897d03cf594bf {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_83e4ba80.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0068980009 be7791a7-d4c9-48fa-abbf-a89f72120080_wgs_gdc_realn.bam 59292343946 BAM harmonized CPTAC3 b0a94a4d-443d-44bb-a3b9-ffb660f398fb 4960ef325fc4d5d0e84509fda71588e7 {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_83e4ba80.WXS.T C3N-00573 CCRCC WXS tumor CPT0068980009 CPT0068980009.WholeExome.RP-1303.bam 24805270574 BAM aligned CPTAC3 f32bf482-1f8c-4045-82f0-5d8578ed7738 636d8a4eea10fe61341f92506bdd0bbb {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_83e4ba80.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0068980009 be7791a7-d4c9-48fa-abbf-a89f72120080_wxs_gdc_realn.bam 33709116103 BAM harmonized CPTAC3 5912c53d-4698-4252-a96b-a60b38e3840a 83bfcf6ef859fd76ff59d39445ba5588 {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_910b30c0.miRNA-Seq.S40_L005_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068970006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGATC_S40_L005_R1_001.unaln.bam 218993804 BAM S40_L005_R1 unaligned CPTAC3 ba781018-ba9c-4c64-85fa-a8ef4dba9200 591872519abc27e64d9df227d7dbbae1 {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_910b30c0.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068970006 fb1eab31-0fb2-4b7c-8cb1-adc25e1f9a5a_mirnaseq_gdc_realn.bam 243959981 BAM harmonized CPTAC3 a20a845d-e264-4de7-963b-75c1dd397bf6 4367511abc4794cfc87b8e8b1f22e73f {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_910b30c0.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.chimeric.gdc_realn.bam 238298314 BAM chimeric harmonized CPTAC3 eeb7d8cf-caed-44a4-b545-e4c23be8b2aa dfaeaa7fe048a1d5ef7debc5c13bc968 {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_910b30c0.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.genomic.gdc_realn.bam 8002486750 BAM genomic harmonized CPTAC3 54cb83c4-9788-470a-9c1e-b47f068ac22c 3e56ff811321c856a7a48a6cf4f9c34f {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_910b30c0.RNA-Seq.S33_L005_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R1_001.fastq.gz 3596352020 FASTQ S33_L005_R1 unaligned CPTAC3 b956ad15-1015-4bcb-8826-06e134175ba8 d64435c8dc4c8358b458b2296fa09c9d {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_910b30c0.RNA-Seq.S33_L005_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R2_001.fastq.gz 4295270762 FASTQ S33_L005_R2 unaligned CPTAC3 44682b18-e494-476f-b1fa-4e047c4abb0a b2c512114bf73f264707288e38e101c4 {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_910b30c0.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.transcriptome.gdc_realn.bam 10612314019 BAM transcriptome harmonized CPTAC3 d8b4ac5b-0060-4bb0-a7e6-8c5bce0eb8c0 25ce7d89fcf9cd63caeae6ec096e956c {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_be849330.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0068990009 204372030106_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7afc4f3b-2f09-427b-808c-66d179518130 7a9d2a7ea48cc89653a32384bb4cbf93 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_be849330.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0068990009 204372030106_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 2d65e679-49f8-4a55-97ac-338a4b1a0abd 64ec3c22670c15c2c7cc4f6d7086ca04 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_be849330.WGS.T C3N-00573 CCRCC WGS tumor CPT0068990009 CPT0068990009.WholeGenome.RP-2158.bam 24006869196 BAM aligned CPTAC3 8a4cf43a-f13e-47d7-aabf-b967d32efa25 e76fa18a1fb5d2f248d1a234e9c679a0 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_be849330.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0068990009 97244938-2af2-44f7-99b1-b7ca4c776293_wgs_gdc_realn.bam 70411947009 BAM harmonized CPTAC3 32d40ab3-f969-4486-b486-376d71c729d3 efc42af958369bdff60bd855d5b95c44 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_be849330.WXS.T C3N-00573 CCRCC WXS tumor CPT0068990009 CPT0068990009.WholeExome.RP-1303.bam 20319562957 BAM aligned CPTAC3 dc98df8e-b119-4588-85f6-c5e77cfb412e ee393af6d1da56e8a83726e120e129d1 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.DUP_be849330.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0068990009 97244938-2af2-44f7-99b1-b7ca4c776293_wxs_gdc_realn.bam 27445546159 BAM harmonized CPTAC3 b5cdbe53-9ebe-471d-b484-dfcd85091b0f d488f08b4e0344c9ef02483e1b90e3c6 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00573.MethArray.Green.A C3N-00573 CCRCC Methylation_Array tissue_normal CPT0069010009 204930640065_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 25623139-0dc3-44c5-bc87-d80d384ca5ca 97ce74baa261133e37723fd0303be7d6 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0069000006 202184990059_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 12d3422a-d8c6-43f2-a85f-01114b6d2f07 a58690a199f4cfc355e2fba7bd3f8ad2 {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor"} -C3N-00573.MethArray.Red.A C3N-00573 CCRCC Methylation_Array tissue_normal CPT0069010009 204930640065_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 61792453-d6a3-42d3-bd89-838516602104 e5180820dfc99b2f853aec90dbc09f35 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0069000006 202184990059_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 c20402c5-34ec-4590-8ac6-48d0b8aab23a 139f7403804059ffe7e0acf659656cd4 {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor"} -C3N-00573.miRNA-Seq.A.hg38 C3N-00573 CCRCC miRNA-Seq tissue_normal CPT0069010006 451fbc46-8b0e-48a0-9670-8013bbe5d7c9_mirnaseq_gdc_realn.bam 242738070 BAM harmonized CPTAC3 75a76769-6aa2-4fc3-b456-941f1ce102cf 01bc4d1f81807c2c13997d3a811e5e40 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.miRNA-Seq.S13_L003_R1.A C3N-00573 CCRCC miRNA-Seq tissue_normal CPT0069010006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L003_R1_001.unaln.bam 219449464 BAM S13_L003_R1 unaligned CPTAC3 7072c7c4-a59c-40b9-9d36-ca974db4a6ef 162399ff30f7a581bdb10a9dd19d5fb3 {"aliquot_tag": "ALQ_9f339f1c", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.miRNA-Seq.S22_L001_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0069000009 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L001_R1_001.unaln.bam 222929934 BAM S22_L001_R1 unaligned CPTAC3 22f2b8bf-1dac-467c-93f0-58539d6e0401 2a6b9c5e48abd784ca2c7a086dfa4638 {"aliquot_tag": "ALQ_32ecab3d", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0069000009 a9123e41-4f53-4407-8322-d4b30c66f144_mirnaseq_gdc_realn.bam 249247311 BAM harmonized CPTAC3 0e881d6c-4a59-4ad8-a17d-ce393bfddcce 0a4d07a6f6246fd15742b951dbcba123 {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor"} -C3N-00573.RNA-Seq.chimeric.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.chimeric.gdc_realn.bam 43942371 BAM chimeric harmonized CPTAC3 8e189728-6166-4584-bb07-fd9161b99405 dd132ad91bf784311cec57ac71a16168 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.chimeric.gdc_realn.bam 33164121 BAM chimeric harmonized CPTAC3 349d4e5d-996e-4655-beef-dddb8c61699a efe23bf0a100b6d7f14f863a4b8a208d {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor"} -C3N-00573.RNA-Seq.genomic.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.genomic.gdc_realn.bam 7465468761 BAM genomic harmonized CPTAC3 4e104baa-f4a3-4f9a-b8b5-1f86e19f8bf9 0138b474b740e3bc606faea34cf2b619 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.genomic.gdc_realn.bam 7926788094 BAM genomic harmonized CPTAC3 2a452ecd-f0f5-4f14-8e98-481535b87a02 e4da0b716de71b24b0dd886d106862a9 {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor"} -C3N-00573.RNA-Seq.S13_L004_R1.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R1_001.fastq.gz 3774504274 FASTQ S13_L004_R1 unaligned CPTAC3 2e2880df-0c02-43ff-a8fc-7f8ca3b8cfa1 f173b3f364ca65d1f7367641a5e9f9b5 {"aliquot_tag": "ALQ_9f339f1c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.RNA-Seq.S13_L004_R2.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R2_001.fastq.gz 4013776353 FASTQ S13_L004_R2 unaligned CPTAC3 17350738-3fbb-4894-bed3-5fe7a8d0d6ae ed7061257ddb5e25e8f2f3d541047c2f {"aliquot_tag": "ALQ_9f339f1c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.RNA-Seq.S9_L003_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3753340556 FASTQ S9_L003_R1 unaligned CPTAC3 e63a8f80-3340-4961-8b91-7d6567b3d9ba 48541fdc28c754e4add81d09b3320f64 {"aliquot_tag": "ALQ_32ecab3d", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00573.RNA-Seq.S9_L003_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R2_001.fastq.gz 4057789628 FASTQ S9_L003_R2 unaligned CPTAC3 6da0f2bc-0521-42e0-8b7c-364457d2288b d92b6f105372b6547ea823c42e4225dc {"aliquot_tag": "ALQ_32ecab3d", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00573.RNA-Seq.transcriptome.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.transcriptome.gdc_realn.bam 8964737827 BAM transcriptome harmonized CPTAC3 c8926631-fa8b-4dcb-9ea6-da70055978e7 46d57fe3bc4662b4fd6027075f9ac1f8 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.transcriptome.gdc_realn.bam 10041898571 BAM transcriptome harmonized CPTAC3 bd90c489-6a45-4da2-93ad-7f01ecd89f07 f40b0fd3c9c88cf0c527059579515fd7 {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor"} -C3N-00573.WGS.A C3N-00573 CCRCC WGS tissue_normal CPT0069010009 CPT0069010009.WholeGenome.RP-1303.bam 69090535173 BAM aligned CPTAC3 6d270594-bf4c-4a21-967e-3938ed49b9f5 b8e72e3a1ab1d0934be923387943fbe0 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.WGS.A.hg38 C3N-00573 CCRCC WGS tissue_normal CPT0069010009 b641e57a-2b34-4d36-bd2e-8a3a54b988b8_wgs_gdc_realn.bam 100417816170 BAM harmonized CPTAC3 088e7d09-5a00-4f02-8cac-6ac64c751099 1f7d79b06a6be454dac825f374d53b77 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.WGS.N C3N-00573 CCRCC WGS blood_normal CPT0069090002 CPT0069090002.WholeGenome.RP-1303.bam 89666535823 BAM aligned CPTAC3 23c6345e-53e3-4075-ad51-acd5e6e7978c 2aa85dad5394be202129d314ac364147 {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00573.WGS.N.hg38 C3N-00573 CCRCC WGS blood_normal CPT0069090002 366e021b-ebe0-4ef7-8a77-80f237dc316d_gdc_realn.bam 134721972304 BAM harmonized CPTAC3 e4804cef-cd20-4833-b207-0fe080592c93 975b256c2e110117cbc41cbcd62e5efe {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00573.WGS.T C3N-00573 CCRCC WGS tumor CPT0069000006 CPT0069000006.WholeGenome.RP-1303.bam 62976440347 BAM aligned CPTAC3 5009a6e3-6fb3-46a1-a020-ea967536ab63 4e64e91cd3a95d56ad1920bf1f299f1b {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor"} -C3N-00573.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0069000006 631f5939-bd6d-4a1e-8476-e2fee9ebe6c4_gdc_realn.bam 93381403741 BAM harmonized CPTAC3 cf6a14f4-1b5d-4c7f-bc95-dd59a30a2aad 738b49541d52614368856be851b0b8b4 {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor"} -C3N-00573.WXS.A C3N-00573 CCRCC WXS tissue_normal CPT0069010009 CPT0069010009.WholeExome.RP-1303.bam 35811509637 BAM aligned CPTAC3 6ebb8e44-9ecd-41ab-9454-f2d85e017c3d 9797f8a4337b4f128a7904dec7409e3b {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.WXS.A.hg38 C3N-00573 CCRCC WXS tissue_normal CPT0069010009 b641e57a-2b34-4d36-bd2e-8a3a54b988b8_wxs_gdc_realn.bam 48348802385 BAM harmonized CPTAC3 5783af03-1720-410e-af8b-c90c4df4069e b0797853390ea4ba96827cada96c0d4d {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00573.WXS.N C3N-00573 CCRCC WXS blood_normal CPT0069090002 CPT0069090002.WholeExome.RP-1303.bam 29689663218 BAM aligned CPTAC3 31b882bd-d0b5-4da6-8bf2-ee747facdecf fd20c25f00c19df6a7625046dbe600ad {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00573.WXS.N.hg38 C3N-00573 CCRCC WXS blood_normal CPT0069090002 366e021b-ebe0-4ef7-8a77-80f237dc316d_gdc_realn.bam 39789493860 BAM harmonized CPTAC3 61d8df3e-f0bc-4831-aada-a79f9afb58f3 5ffe7d1ecef3b1542e26bcf206c5e1f4 {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-00573.WXS.T C3N-00573 CCRCC WXS tumor CPT0069000006 CPT0069000006.WholeExome.RP-1303.bam 25210466686 BAM aligned CPTAC3 cfef351c-5632-4fb9-bc3d-d9bac78493d1 31b202d622aa79be67276fc7432082da {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor"} -C3N-00573.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0069000006 631f5939-bd6d-4a1e-8476-e2fee9ebe6c4_gdc_realn.bam 34690882500 BAM harmonized CPTAC3 fa3d2f42-f366-4dc6-a4a0-e49cddfc61dc d57ce7d11c3b97fabcc18ca0e365bc2e {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor"} -C3N-00574.MethArray.Green.A C3N-00574 LUAD Methylation_Array tissue_normal CPT0090900010 203028200023_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5f8770ac-d592-47e8-976b-b5da2d00384e e567e3b70ec79f440eb82a8be4104fd8 {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.MethArray.Green.T C3N-00574 LUAD Methylation_Array tumor CPT0090860013 202234380017_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1a0a9ac1-1b21-415a-8c67-40e335aeec09 dc1d20acddb12b199a40cecaf72a7665 {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor"} -C3N-00574.MethArray.Red.A C3N-00574 LUAD Methylation_Array tissue_normal CPT0090900010 203028200023_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 ffbdf9dd-a140-4f36-b53c-8594e1dc0e44 2dc68061deae0843c6646dec8ee0144a {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.MethArray.Red.T C3N-00574 LUAD Methylation_Array tumor CPT0090860013 202234380017_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 77aa5c81-50a3-479d-8dd5-2b1ef6baf5bb a18d15872e1ae994f169591e407153ea {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor"} -C3N-00574.miRNA-Seq.A.hg38 C3N-00574 LUAD miRNA-Seq tissue_normal CPT0090900007 1fb36a49-5f7a-47f5-9210-3ab931f6e122_mirnaseq_gdc_realn.bam 192899428 BAM harmonized CPTAC3 8a4275c3-cbb1-4b1b-81f3-f16ea2088019 4eee016717622a41095729d096697de5 {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.miRNA-Seq.S2_L007_R1.T C3N-00574 LUAD miRNA-Seq tumor CPT0090860006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATGAGC_S2_L007_R1_001.unaln.bam 262798739 BAM S2_L007_R1 unaligned CPTAC3 03041c07-a77e-4c6f-a7fc-2890cd15701d 77a248975538decf1402ec22bf0f882a {"aliquot_tag": "ALQ_8df8961e", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00574.miRNA-Seq.S9_L005_R1.A C3N-00574 LUAD miRNA-Seq tissue_normal CPT0090900007 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L005_R1_001.unaln.bam 173567554 BAM S9_L005_R1 unaligned CPTAC3 81b57eab-3e68-43ac-8f67-aacab26155f1 d61aef79a1c370351a7f38ae1938ccb6 {"aliquot_tag": "ALQ_bee3808d", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.miRNA-Seq.T.hg38 C3N-00574 LUAD miRNA-Seq tumor CPT0090860006 260017b1-18d9-4d3f-bcf9-285017d013d1_mirnaseq_gdc_realn.bam 291553624 BAM harmonized CPTAC3 e3776c3f-8887-4e4e-9ff6-e67349f0405c 0d9f5be9ac2885495bf6dbc1188e4021 {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor"} -C3N-00574.RNA-Seq.chimeric.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.chimeric.gdc_realn.bam 142911348 BAM chimeric harmonized CPTAC3 bfd206aa-bd5b-43cd-beea-00dea0b5fe9d 2858b7ad3a65a72e4f145d3ab4deaece {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.RNA-Seq.chimeric.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.chimeric.gdc_realn.bam 44075065 BAM chimeric harmonized CPTAC3 5aecfec6-e2c6-4067-a028-98a188dd5297 cb53cf617d78356ef132eb605f188893 {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor"} -C3N-00574.RNA-Seq.genomic.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.genomic.gdc_realn.bam 9424689591 BAM genomic harmonized CPTAC3 deabed94-79ee-4065-b9d8-06d8024f1ba8 fd39b510a9c3dd34bd7d7b302308044d {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.RNA-Seq.genomic.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.genomic.gdc_realn.bam 10404263676 BAM genomic harmonized CPTAC3 6e74cc9e-83fc-4112-8174-18e422459927 6018f45537fe9ed4fd32e31b7fa5e8bc {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor"} -C3N-00574.RNA-Seq.S16_L004_R1.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 4416156401 FASTQ S16_L004_R1 unaligned CPTAC3 e58e5af1-32fc-41b7-8957-9b7cecd576a9 25b1f3c948c3008b904d4100e6958734 {"aliquot_tag": "ALQ_bee3808d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.RNA-Seq.S16_L004_R2.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 4682498670 FASTQ S16_L004_R2 unaligned CPTAC3 af414703-79f3-4d68-be79-9e0f77d0baee 25fd90f707a93241df00296d41ea16a5 {"aliquot_tag": "ALQ_bee3808d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.RNA-Seq.S6_L007_R1.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R1_001.fastq.gz 4676322581 FASTQ S6_L007_R1 unaligned CPTAC3 015afacd-88f7-4ba6-816e-6a052ce93628 a1bbabfd9da0f981a6249bef59ba5783 {"aliquot_tag": "ALQ_8df8961e", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00574.RNA-Seq.S6_L007_R2.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R2_001.fastq.gz 5050755625 FASTQ S6_L007_R2 unaligned CPTAC3 1f745827-9869-45f6-a84f-6f160ecef687 62a11b78343c4a621a67638c63d80e20 {"aliquot_tag": "ALQ_8df8961e", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00574.RNA-Seq.transcriptome.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.transcriptome.gdc_realn.bam 10718727566 BAM transcriptome harmonized CPTAC3 e1a9345a-bdc3-44a6-9ec3-885dec9d3071 d6d03e7bec69883eee5c95f649637070 {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.RNA-Seq.transcriptome.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.transcriptome.gdc_realn.bam 12548124190 BAM transcriptome harmonized CPTAC3 e0962696-b058-4d66-80b3-b71025688850 88a37a01a70e45dc265639e8cdae54a7 {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor"} -C3N-00574.WGS.A C3N-00574 LUAD WGS tissue_normal CPT0090900010 CPT0090900010.WholeGenome.RP-1303.bam 56152430483 BAM aligned CPTAC3 2bc03203-26ad-493d-8498-89c15197d3ec 4b44b560e88fd3a3dc9599817aace10c {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.WGS.A.hg38 C3N-00574 LUAD WGS tissue_normal CPT0090900010 6d88bc3f-a88e-41e9-ad9f-e8bec0970b8f_wgs_gdc_realn.bam 82600043908 BAM harmonized CPTAC3 b4050317-1f02-4ee2-a881-652f46279205 85fb625b8cdcbd0d64653af47d5e150a {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.WGS.N C3N-00574 LUAD WGS blood_normal CPT0090980002 CPT0090980002.WholeGenome.RP-1303.bam 70048874040 BAM aligned CPTAC3 94e99d79-e387-4c1b-9a27-01eeca00f7f6 e41c509eca6b87609d2fb93a36fab464 {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00574.WGS.N.hg38 C3N-00574 LUAD WGS blood_normal CPT0090980002 dcda1140-7219-4b8b-a196-5400ac5946dc_wgs_gdc_realn.bam 103567306792 BAM harmonized CPTAC3 67547610-0b58-434f-9614-ea76869e12ea f0aa1797b928d2575eea6541518fac6e {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00574.WGS.T C3N-00574 LUAD WGS tumor CPT0090860013 CPT0090860013.WholeGenome.RP-1303.bam 59492523920 BAM aligned CPTAC3 91b099ec-e48f-43fa-bddd-71abd4d05cbb 5903da279fff0f55c44ac91b1ff7a69f {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor"} -C3N-00574.WGS.T.hg38 C3N-00574 LUAD WGS tumor CPT0090860013 98d420ef-b893-47dd-afe4-076b40ce8706_wgs_gdc_realn.bam 87203417572 BAM harmonized CPTAC3 77c2d351-744d-46a3-97a1-71c545e67517 e016fae434d41b2fb64a11791bf3e724 {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor"} -C3N-00574.WXS.A C3N-00574 LUAD WXS tissue_normal CPT0090900010 CPT0090900010.WholeExome.RP-1303.bam 27361471938 BAM aligned CPTAC3 63ce7a2c-5bea-4a1b-8134-a3a7defa6dc3 aa8b0530aed87c398886508d4702af82 {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.WXS.A.hg38 C3N-00574 LUAD WXS tissue_normal CPT0090900010 6d88bc3f-a88e-41e9-ad9f-e8bec0970b8f_wxs_gdc_realn.bam 36740255073 BAM harmonized CPTAC3 35177e04-9c3a-4416-b53a-64e3f1029268 14d3ac00dc19badcf756a89c084dfbf0 {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00574.WXS.N C3N-00574 LUAD WXS blood_normal CPT0090980002 CPT0090980002.WholeExome.RP-1303.bam 27636177579 BAM aligned CPTAC3 b7f12dba-05c7-43d8-a4ad-58d9821040a9 dc3a75b6666be70a3a3c6a4127a9765e {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00574.WXS.N.hg38 C3N-00574 LUAD WXS blood_normal CPT0090980002 dcda1140-7219-4b8b-a196-5400ac5946dc_wxs_gdc_realn.bam 36298025651 BAM harmonized CPTAC3 06f8e00c-d7a7-4f5a-8c46-cccac73b944e ce39b8fe658435839095a2bb2f4361d1 {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00574.WXS.T C3N-00574 LUAD WXS tumor CPT0090860013 CPT0090860013.WholeExome.RP-1303.bam 39695126985 BAM aligned CPTAC3 9ba4d6d9-d2c8-4b78-8d80-583257a515f8 70c4da62d3409ebf2b2bbe0edf62c7da {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor"} -C3N-00574.WXS.T.hg38 C3N-00574 LUAD WXS tumor CPT0090860013 98d420ef-b893-47dd-afe4-076b40ce8706_wxs_gdc_realn.bam 53794823717 BAM harmonized CPTAC3 e4f316ae-a7b3-4d9c-8726-723f16c008fc 771ab02e920f6ce463babc5210f0fd04 {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_3150f7e8.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069150009 204372030023_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 bc2523fd-a0c7-46f3-b131-a3df00ab7d51 c31cfdb0e2e7e7020c2e8f68e7468dc1 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_3150f7e8.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069150009 204372030023_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 4f678198-3268-4a6d-9d02-7b19150e9add c96d0ec8585ce4d19cad0dcfadb93ec6 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_3150f7e8.WGS.T C3N-00577 CCRCC WGS tumor CPT0069150009 CPT0069150009.WholeGenome.RP-2158.bam 24649047463 BAM aligned CPTAC3 0f0ba1a9-c91f-4344-91c9-0f864a4cd1f4 4362015b70e24f01d8c0736050903475 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_3150f7e8.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069150009 8c9608a3-d2b8-429c-8201-d3ab5fd3a496_wgs_gdc_realn.bam 72858954482 BAM harmonized CPTAC3 69f53591-14d1-47f3-884a-e84b2b8478be cfdcf37c020b6d634f0db0eeec9dcb10 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_3150f7e8.WXS.T C3N-00577 CCRCC WXS tumor CPT0069150009 CPT0069150009.WholeExome.RP-1303.bam 27577116032 BAM aligned CPTAC3 46f78b1a-c9f1-4b03-9949-ef253f3c862e 7fd2e2c5562d4ae81ce5367466993bde {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_3150f7e8.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069150009 8c9608a3-d2b8-429c-8201-d3ab5fd3a496_wxs_gdc_realn.bam 39090472095 BAM harmonized CPTAC3 3fd2a0fa-7e31-4b7b-a619-2349f3a264b2 bf8c3c1eca973ba3b73de036c42e1a43 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_4b90a488.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069170009 204367490151_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d96c3105-11d6-472d-8187-a9e1417094fa a7ce3967727edb56e8fff1b319b54931 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_4b90a488.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069170009 204367490151_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 eab6b3ad-de2e-44b3-baae-db2b0a14731a ad33d01ff7ef5129c054aa123c1eb6a4 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_4b90a488.WGS.T C3N-00577 CCRCC WGS tumor CPT0069170009 CPT0069170009.WholeGenome.RP-2158.bam 20583029522 BAM aligned CPTAC3 60562170-0ff0-4681-9b73-b1e1051a12c8 8f1d45959325d63aa64b3685ea17697a {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_4b90a488.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069170009 49b836e4-e6ee-4a46-b4d9-d5a95d3bd2ec_wgs_gdc_realn.bam 59416823850 BAM harmonized CPTAC3 ef491060-c2fc-412d-a896-7abbba604bcc 38c5680b0197addad0b018d477986f16 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_4b90a488.WXS.T C3N-00577 CCRCC WXS tumor CPT0069170009 CPT0069170009.WholeExome.RP-1303.bam 19787142671 BAM aligned CPTAC3 dc931ec0-196f-45c7-8341-64676a20cad9 30b268ae4a6e0004f632ed13cc098d72 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_4b90a488.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069170009 49b836e4-e6ee-4a46-b4d9-d5a95d3bd2ec_wxs_gdc_realn.bam 27339869848 BAM harmonized CPTAC3 09371cda-a798-43c1-946b-b816603cee27 aaefa4e26929b8232182dea143c80f89 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_597f2ec8.miRNA-Seq.S8_L001_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069180006 200526_UNC32-K00270_0248_BHH7WFBBXY_CGGAAT_S8_L001_R1_001.unaln.bam 463156172 BAM S8_L001_R1 unaligned CPTAC3 c2192a85-cc2e-4789-8db7-f2094812973d bfbeb34f0d865d54f681ddedc8fda781 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_597f2ec8.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069180006 2d23b851-203c-4a9b-b946-5b91ff2f08c1_mirnaseq_gdc_realn.bam 507716346 BAM harmonized CPTAC3 8e8f9982-4ec0-4bce-b97b-d06dcdd02225 ccacb530c1d8d13387eb56f3859b7075 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_597f2ec8.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.chimeric.gdc_realn.bam 61931323 BAM chimeric harmonized CPTAC3 e213b21e-3a99-46ee-9ed1-cf77ca3e1241 678334d6be0acecd006d6488a87b85c8 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_597f2ec8.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.genomic.gdc_realn.bam 9399824558 BAM genomic harmonized CPTAC3 5756adc0-42cb-483b-af69-024de3e5d993 a75387e64e6638ad0543b9bfa70f58d5 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_597f2ec8.RNA-Seq.S29_L008_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R1_001.fastq.gz 4434135807 FASTQ S29_L008_R1 unaligned CPTAC3 60437aba-8115-44b3-84df-8849e86a5a1a eb36a7eed0a343b7030f3fa725343e5b {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_597f2ec8.RNA-Seq.S29_L008_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R2_001.fastq.gz 4984857975 FASTQ S29_L008_R2 unaligned CPTAC3 91d20682-7bde-4749-bac3-4f27f96f885a 40bd78763828a6f7c3ea70cc11b6886e {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_597f2ec8.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.transcriptome.gdc_realn.bam 12381574272 BAM transcriptome harmonized CPTAC3 a29c34e3-9f88-45d6-a2fd-6c550da84910 dd6b177c4e6e86cf610fad683e01d358 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_a1efea79.miRNA-Seq.S36_L005_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069150006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L005_R1_001.unaln.bam 184070990 BAM S36_L005_R1 unaligned CPTAC3 53edc5cd-f442-40d0-8dc2-86caa01f9d74 6f4f5213fa88873ad505857f5753e716 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_a1efea79.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069150006 2d267255-15d9-4c81-9aaa-e9e247d8f685_mirnaseq_gdc_realn.bam 203497337 BAM harmonized CPTAC3 b2a6ff8c-d0ca-43c1-8ecf-f30bce63bbf2 b9efb580e1b35a247c29776c23267287 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_a1efea79.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.chimeric.gdc_realn.bam 115088007 BAM chimeric harmonized CPTAC3 a469ef69-0ad4-4100-8f26-00a8c194eba6 84fa5aa5954ffcff409c5f5fddbe98c7 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_a1efea79.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.genomic.gdc_realn.bam 11292644587 BAM genomic harmonized CPTAC3 7831b501-4c9e-4282-894a-9180bb347d4e 5f4d6574d44526e0c3921667c2ee8ca1 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_a1efea79.RNA-Seq.S35_L005_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R1_001.fastq.gz 5367247074 FASTQ S35_L005_R1 unaligned CPTAC3 597afa5b-9346-4018-9b9e-72dd9003259f 9f1d57ee81b69f757f06a31d2c4f7160 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_a1efea79.RNA-Seq.S35_L005_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R2_001.fastq.gz 6345599528 FASTQ S35_L005_R2 unaligned CPTAC3 16cac540-faae-4c30-9a93-0401752d030b a0691d5eac059bdfde5ed9f13d4eaeaa {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_a1efea79.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.transcriptome.gdc_realn.bam 16544698267 BAM transcriptome harmonized CPTAC3 987e0d16-d94d-4c04-9836-586a36bc98fd 0ce2af44556b7c98a54f4a6815c5b369 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_c9c03359.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069180009 204367490082_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35449faa-21ec-4fc9-8f4b-d8f305d0968f ddd9af4e5b05245af8da27e4737b3d60 {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_c9c03359.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069180009 204367490082_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 8f7e3ae4-401f-4a2f-934a-f6baa6e749e3 f1b7d1347603b5036676721901d6c32b {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_c9c03359.WGS.T C3N-00577 CCRCC WGS tumor CPT0069180009 CPT0069180009.WholeGenome.RP-2158.bam 32708183632 BAM aligned CPTAC3 b8b5af56-1574-4c19-8092-d6dca22ee4d0 8e890927bd3d5640c24580b5168a98ab {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_c9c03359.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069180009 b55b7dd3-d87e-4112-a433-cdfe50201ed6_wgs_gdc_realn.bam 98755805687 BAM harmonized CPTAC3 7e247e61-f612-446f-a69e-3fa9fa2f7c79 65fbcceedc5528ff12c9ed6930cfe982 {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_c9c03359.WXS.T C3N-00577 CCRCC WXS tumor CPT0069180009 CPT0069180009.WholeExome.RP-1303.bam 20072747318 BAM aligned CPTAC3 0801c498-0478-45de-9416-9da8c155862e 8556b313142eceba6136582b83bb0773 {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_c9c03359.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069180009 b55b7dd3-d87e-4112-a433-cdfe50201ed6_wxs_gdc_realn.bam 27557276894 BAM harmonized CPTAC3 b187211c-591b-455e-af60-0e1f1952cc35 ebd8f22a6b978134d8975c6d5860970b {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_db2fb919.miRNA-Seq.S6_L001_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069170006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCAACA_S6_L001_R1_001.unaln.bam 181702767 BAM S6_L001_R1 unaligned CPTAC3 be26a65b-799d-43a6-8a1c-fae252ce3d58 516fe673b5f1dee5b6c479810ec5eaf6 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_db2fb919.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069170006 814fa060-8ef4-404b-8059-dc7524965419_mirnaseq_gdc_realn.bam 207350277 BAM harmonized CPTAC3 30c56365-ade7-47d2-8e38-6a10d905beaf 153c91cde5b56ab870db2f2deac82a27 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_db2fb919.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.chimeric.gdc_realn.bam 50965546 BAM chimeric harmonized CPTAC3 78797883-f740-4f25-adf9-28a43a005d40 266c0f97a68c4893d4c8985f7ae1119c {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_db2fb919.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.genomic.gdc_realn.bam 7998487918 BAM genomic harmonized CPTAC3 d9de84f9-f69f-470e-aa9a-530a82eaa7a9 463655237a4393825250172b5a1cb0cc {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_db2fb919.RNA-Seq.S28_L007_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R1_001.fastq.gz 3840518948 FASTQ S28_L007_R1 unaligned CPTAC3 646f78df-cd18-4ce3-a1f6-9da37aef3308 2926811c7a5ba4859d8b7a84fda6c878 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_db2fb919.RNA-Seq.S28_L007_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R2_001.fastq.gz 4290629334 FASTQ S28_L007_R2 unaligned CPTAC3 d0440171-58ed-4780-807e-8cc091ca601a a3214d2f3948188b8290ab52f1952438 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00577.DUP_db2fb919.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.transcriptome.gdc_realn.bam 12141553956 BAM transcriptome harmonized CPTAC3 725cb00b-b4eb-439c-8e4c-fd879d1df3aa 475c7117df2f18691ac7fcecb18125a1 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00577.MethArray.Green.A C3N-00577 CCRCC Methylation_Array tissue_normal CPT0069190009 204930640065_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 904bd903-7d50-4618-ab6f-197e3f881b3e ff41041e10af386a5225ebbebe87545a {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069160006 202178770079_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 b71c6660-9862-442d-986d-c925a53b9d4c 078072395dfe304b4ba188a9feb7ee23 {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor"} -C3N-00577.MethArray.Red.A C3N-00577 CCRCC Methylation_Array tissue_normal CPT0069190009 204930640065_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 1ea981bc-d4f2-48f8-95ba-163e61e6291e 1d1ff8f3a4bda93efe8bf38bb6908238 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069160006 202178770079_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 fbd88f51-a5c4-499b-96be-fa6483856319 717c7f48b41fcbc3710a53b0b1dc9bfc {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor"} -C3N-00577.miRNA-Seq.A.hg38 C3N-00577 CCRCC miRNA-Seq tissue_normal CPT0069190006 ca2ba3b2-2502-405a-bfbf-5e6ebe950099_mirnaseq_gdc_realn.bam 229901010 BAM harmonized CPTAC3 353df41b-f6bb-4d10-9251-9b84bcbf4c24 aae93e3d4cf9918b0778f64eac3e6c3d {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.miRNA-Seq.S14_L003_R1.A C3N-00577 CCRCC miRNA-Seq tissue_normal CPT0069190006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L003_R1_001.unaln.bam 207695420 BAM S14_L003_R1 unaligned CPTAC3 b74697f3-a0cf-4bf1-9b54-7578b7da7f3c ed0cc8f0f798b480bdfb61a4476def65 {"aliquot_tag": "ALQ_641f0778", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.miRNA-Seq.S23_L001_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069160009 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L001_R1_001.unaln.bam 200713625 BAM S23_L001_R1 unaligned CPTAC3 ce2a5270-a547-4294-9425-dc4a270209b5 d42ab7a723898afa66499594cba97577 {"aliquot_tag": "ALQ_76f08d38", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069160009 f4773953-3ff7-4de1-98c6-6eb77cd37e42_mirnaseq_gdc_realn.bam 218733046 BAM harmonized CPTAC3 4edb19e2-745c-485d-b705-7a85ef740b01 88bc3a35ed6cefa532ae8b078cef2be3 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor"} -C3N-00577.RNA-Seq.chimeric.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.chimeric.gdc_realn.bam 65770599 BAM chimeric harmonized CPTAC3 d1796a74-e014-4cf9-8e51-a4cbcabc6769 9c5c75f189977a652ff0703bf94bc021 {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.chimeric.gdc_realn.bam 37673311 BAM chimeric harmonized CPTAC3 c66cc7c9-ae7f-4cc9-b3f0-794d652bd346 3fe87f47abc399ad36db7c6359531d07 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor"} -C3N-00577.RNA-Seq.genomic.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.genomic.gdc_realn.bam 8683774616 BAM genomic harmonized CPTAC3 cc4c1875-0a47-4207-b3e9-e3067847eba3 9e62124d1a51a65090054f49770b3a08 {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.genomic.gdc_realn.bam 9324648846 BAM genomic harmonized CPTAC3 b7a6709c-175a-4815-8001-675a977a0434 5ecf3248800e27214508e45d77596ac7 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor"} -C3N-00577.RNA-Seq.S11_L003_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R1_001.fastq.gz 4640183044 FASTQ S11_L003_R1 unaligned CPTAC3 a979d5b0-ffce-4214-b01a-05afd602eb21 545d58b91899da40cbf847109be025a3 {"aliquot_tag": "ALQ_76f08d38", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00577.RNA-Seq.S11_L003_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R2_001.fastq.gz 5008682904 FASTQ S11_L003_R2 unaligned CPTAC3 e920ce07-464f-4b33-8975-844c5780aa23 946e8a55d9de57a9af758553e880031d {"aliquot_tag": "ALQ_76f08d38", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00577.RNA-Seq.S9_L003_R1.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R1_001.fastq.gz 4329378837 FASTQ S9_L003_R1 unaligned CPTAC3 4d3c59d0-b5c0-4299-ac8f-8b51ca8b4938 1f3b8bd284e1b355bb43b3ef07b72a02 {"aliquot_tag": "ALQ_641f0778", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.RNA-Seq.S9_L003_R2.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R2_001.fastq.gz 4611916650 FASTQ S9_L003_R2 unaligned CPTAC3 2cc2a75d-9c3e-4dea-aa07-08a8a446e33e 0e476cc061d399f797530706a813f9af {"aliquot_tag": "ALQ_641f0778", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.RNA-Seq.transcriptome.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.transcriptome.gdc_realn.bam 10279472984 BAM transcriptome harmonized CPTAC3 caafdc9e-ef8f-4a7e-9b14-657e58d968f8 0155877ce16d6d273cb7df5c2d2cdac3 {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.transcriptome.gdc_realn.bam 13226154960 BAM transcriptome harmonized CPTAC3 15cce07d-a9af-40bc-bf73-ceed6eefa645 4e7e02504f519b467d6ea1a56f9b3e16 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor"} -C3N-00577.WGS.A C3N-00577 CCRCC WGS tissue_normal CPT0069190009 CPT0069190009.WholeGenome.RP-1303.bam 57243384408 BAM aligned CPTAC3 035edd67-47b8-446a-972a-7dfbd6443b13 d7d012bba50e3d24d881bf8b4d893b67 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.WGS.A.hg38 C3N-00577 CCRCC WGS tissue_normal CPT0069190009 7c1caf40-74a0-42c9-b02f-8edb7aa3fe23_wgs_gdc_realn.bam 83842614713 BAM harmonized CPTAC3 a6c4b74c-416c-4b9a-8f93-af739d339e17 6085955ac045892a57ab90486b9d2920 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.WGS.N C3N-00577 CCRCC WGS blood_normal CPT0069270002 CPT0069270002.WholeGenome.RP-1303.bam 81187262627 BAM aligned CPTAC3 811478c0-df30-43d4-a3fe-4995353ec40b 5d0a88d66353c96b2873470a981ec179 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal"} -C3N-00577.WGS.N.hg38 C3N-00577 CCRCC WGS blood_normal CPT0069270002 c934aa94-bd1f-44cb-af1f-1ef429ef6471_gdc_realn.bam 122798031864 BAM harmonized CPTAC3 3d7ac433-88ca-4a1f-9e56-ffba7629f0de c7d425dc7e8f054c9c6f776c56c70951 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal"} -C3N-00577.WGS.T C3N-00577 CCRCC WGS tumor CPT0069160006 CPT0069160006.WholeGenome.RP-1303.bam 75146386719 BAM aligned CPTAC3 113ab953-c19f-49b5-8053-3592adf84f8c 2129ff76e4e26c20a20a945ac78ce9c9 {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor"} -C3N-00577.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069160006 bc253ff3-cdd3-4751-87e2-e3b0f7bbc296_gdc_realn.bam 115007617315 BAM harmonized CPTAC3 c9636e42-633a-46b8-82ba-c06c6eb15d2e 814b50377642bcdc39a38033677c578c {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor"} -C3N-00577.WXS.A C3N-00577 CCRCC WXS tissue_normal CPT0069190009 CPT0069190009.WholeExome.RP-1303.bam 25615893931 BAM aligned CPTAC3 f425c822-ee50-4607-acbc-ee92e087b424 87e3e25b4cc788ed5b72fc181d6f2a89 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.WXS.A.hg38 C3N-00577 CCRCC WXS tissue_normal CPT0069190009 7c1caf40-74a0-42c9-b02f-8edb7aa3fe23_wxs_gdc_realn.bam 34309038511 BAM harmonized CPTAC3 163f5aa8-9a3c-4c19-adc7-5a4d19af6266 52db228ac6b86adb9924154174db4eac {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00577.WXS.N C3N-00577 CCRCC WXS blood_normal CPT0069270002 CPT0069270002.WholeExome.RP-1303.bam 26473524625 BAM aligned CPTAC3 60500aa4-6bcf-4cd7-8087-9dededea3b9e 88e14bea892885185133d680d32079b3 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal"} -C3N-00577.WXS.N.hg38 C3N-00577 CCRCC WXS blood_normal CPT0069270002 c934aa94-bd1f-44cb-af1f-1ef429ef6471_gdc_realn.bam 36733661474 BAM harmonized CPTAC3 516d84be-fe02-4d0f-93a4-58f010c5e381 ec0aeb273953393c7a574e0a08cd5724 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal"} -C3N-00577.WXS.T C3N-00577 CCRCC WXS tumor CPT0069160006 CPT0069160006.WholeExome.RP-1303.bam 33136573345 BAM aligned CPTAC3 67957f42-8ca5-4a11-a140-8f8c2fe44fe1 635e6044b24c04287a0a58027df66d02 {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor"} -C3N-00577.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069160006 bc253ff3-cdd3-4751-87e2-e3b0f7bbc296_gdc_realn.bam 45374724155 BAM harmonized CPTAC3 bba7cbc0-bcd2-4af0-8c79-9a6ef01e6b5f 3af7c4e300ec145bb1a6edf16e0b782d {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor"} -C3N-00578.MethArray.Green.A C3N-00578 LUAD Methylation_Array tissue_normal CPT0069370009 203027390028_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4a38c9ae-e8b2-4b71-a26d-bb4fa60147c3 cefb0163cf51100e1eeb418dbf1f0854 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.MethArray.Green.T C3N-00578 LUAD Methylation_Array tumor CPT0069360006 202178770083_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f84d9b19-3bd4-4741-86bb-0eb12ea65379 08ba2c0bf32da66143e330e8cdf84fc8 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor"} -C3N-00578.MethArray.Red.A C3N-00578 LUAD Methylation_Array tissue_normal CPT0069370009 203027390028_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 3109ee3d-1211-404f-9576-d75e25a52ea2 a9a04b8dbe8937c11818249222ded967 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.MethArray.Red.T C3N-00578 LUAD Methylation_Array tumor CPT0069360006 202178770083_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 ac7ad385-cedf-40d7-b890-49822d6d3026 f9f86e42e7e4d810d334585323064a7c {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor"} -C3N-00578.miRNA-Seq.A.hg38 C3N-00578 LUAD miRNA-Seq tissue_normal CPT0069370006 b0872c82-acb9-4460-ae57-3c0d176fd2ac_mirnaseq_gdc_realn.bam 227527816 BAM harmonized CPTAC3 90d0b7ce-2d1c-45b8-a122-5caf99afce7e a9d5318b04744bf844184f9d7aa20d28 {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.miRNA-Seq.S24_L001_R1.T C3N-00578 LUAD miRNA-Seq tumor CPT0069360009 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L001_R1_001.unaln.bam 180410493 BAM S24_L001_R1 unaligned CPTAC3 a04ee864-f9c9-4966-8d4d-e7e742e98696 4f15f8c8552a1a53ee585083b361779a {"aliquot_tag": "ALQ_3b382c33", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00578.miRNA-Seq.S48_L007_R1.A C3N-00578 LUAD miRNA-Seq tissue_normal CPT0069370006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L007_R1_001.unaln.bam 204811418 BAM S48_L007_R1 unaligned CPTAC3 dc303926-0c97-42f3-ac45-dc75ac37f9a6 0e54d7e1b607a3b2d646029dc831c54a {"aliquot_tag": "ALQ_96e71812", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.miRNA-Seq.T.hg38 C3N-00578 LUAD miRNA-Seq tumor CPT0069360009 d866d597-2308-4f42-8c97-ab1f9aa7a9f8_mirnaseq_gdc_realn.bam 192740386 BAM harmonized CPTAC3 f6bf63b1-327f-4f7d-9dd4-39686927d334 bad1b3536a779f7065a0fc0ff2ea3990 {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor"} -C3N-00578.RNA-Seq.chimeric.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.chimeric.gdc_realn.bam 166628844 BAM chimeric harmonized CPTAC3 d6d04a2e-0a93-4cf9-919a-2726ca063dac ae4f37d2946eb59dadaffbd9b060cb7c {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.RNA-Seq.chimeric.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.chimeric.gdc_realn.bam 19940346 BAM chimeric harmonized CPTAC3 2d97b434-40e6-460f-8ca4-0828f5c6fb97 e27aede613f823622b3efbca4fababe8 {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor"} -C3N-00578.RNA-Seq.genomic.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.genomic.gdc_realn.bam 9711180006 BAM genomic harmonized CPTAC3 f08c78ee-7c7f-4f09-9083-a064ae719a8b 2078c5f6b84b0a03a62f0498e07fbc45 {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.RNA-Seq.genomic.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.genomic.gdc_realn.bam 7825487659 BAM genomic harmonized CPTAC3 43f49c84-1b86-4447-ae64-29c296126b1f 2078aa7965f4a271508f01dcb964ca29 {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor"} -C3N-00578.RNA-Seq.S10_L003_R1.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R1_001.fastq.gz 3705302992 FASTQ S10_L003_R1 unaligned CPTAC3 f6ac476d-f351-4150-bebc-909e6eedec73 e76450bedb52923f280745aa2ee47cf9 {"aliquot_tag": "ALQ_3b382c33", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00578.RNA-Seq.S10_L003_R2.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R2_001.fastq.gz 4025633873 FASTQ S10_L003_R2 unaligned CPTAC3 5f22e76b-acfc-4033-9c59-f65b5eabf489 bfa2ea3a1599bf98d74b6738853f6a99 {"aliquot_tag": "ALQ_3b382c33", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00578.RNA-Seq.S22_L006_R1.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R1_001.fastq.gz 4461269775 FASTQ S22_L006_R1 unaligned CPTAC3 774a69eb-0843-44ee-be33-e692efec1271 5cdb14fe63c5cb04505fac7d8b6ad0fc {"aliquot_tag": "ALQ_96e71812", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.RNA-Seq.S22_L006_R2.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R2_001.fastq.gz 4791684271 FASTQ S22_L006_R2 unaligned CPTAC3 6876b279-666e-4501-84ab-79d09724fa33 199075c45dd10e5e56e8b40ad546a9e5 {"aliquot_tag": "ALQ_96e71812", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.RNA-Seq.transcriptome.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.transcriptome.gdc_realn.bam 9949495173 BAM transcriptome harmonized CPTAC3 152d6a62-5c8c-4d81-b00c-5b37a9c1c5cf 97be23a7178683b675a81cbb00286799 {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.RNA-Seq.transcriptome.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.transcriptome.gdc_realn.bam 12465037378 BAM transcriptome harmonized CPTAC3 b193b525-1d9f-41bb-b6e9-65b08a14f612 64f14ffb380c57bc6ebde9667364015c {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor"} -C3N-00578.WGS.A C3N-00578 LUAD WGS tissue_normal CPT0069370009 CPT0069370009.WholeGenome.RP-1303.bam 56208312229 BAM aligned CPTAC3 830c92bb-fba3-4307-a157-82790e0dc4d1 3526ff4ecad2d340560ae179519e8d60 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.WGS.A.hg38 C3N-00578 LUAD WGS tissue_normal CPT0069370009 1f8675db-dbe2-4bd5-8b17-4d48eb9d160e_wgs_gdc_realn.bam 82337164921 BAM harmonized CPTAC3 8f941ba5-ee0e-4cad-98d8-1f894cff7187 166b10306cc9959a807d56d7260b7bc1 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.WGS.N C3N-00578 LUAD WGS blood_normal CPT0069450002 CPT0069450002.WholeGenome.RP-1303.bam 71230318484 BAM aligned CPTAC3 7f3483a2-7ec1-4e6c-8f8a-c7576b7441cb 61ce58d1c508aea903cd6f373c16339e {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00578.WGS.N.hg38 C3N-00578 LUAD WGS blood_normal CPT0069450002 85b468e2-00ad-4d47-8a84-9fca723b10f1_gdc_realn.bam 107174031068 BAM harmonized CPTAC3 e518755b-2764-44be-8f88-0bf85e76cc7b 8ca334a54682efd5716b13d30df224f3 {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00578.WGS.T C3N-00578 LUAD WGS tumor CPT0069360006 CPT0069360006.WholeGenome.RP-1303.bam 78744838453 BAM aligned CPTAC3 c0d7dcbb-2c04-40ce-a90a-39d24fef155a 20234fa4b0f91960e614c0f8d8cd7f61 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor"} -C3N-00578.WGS.T.hg38 C3N-00578 LUAD WGS tumor CPT0069360006 18315848-20f3-4ef7-a5d1-c0768c4984c6_gdc_realn.bam 118028303629 BAM harmonized CPTAC3 5e1c9736-0686-4b06-88f4-f25981e90d38 b3288cf70db5466f23f65fc639308366 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor"} -C3N-00578.WXS.A C3N-00578 LUAD WXS tissue_normal CPT0069370009 CPT0069370009.WholeExome.RP-1303.bam 26961964746 BAM aligned CPTAC3 328ff958-183e-49ab-9836-c6714d79b4ef d01a05cc105498b4cb72c0158433d04e {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.WXS.A.hg38 C3N-00578 LUAD WXS tissue_normal CPT0069370009 1f8675db-dbe2-4bd5-8b17-4d48eb9d160e_wxs_gdc_realn.bam 36419560644 BAM harmonized CPTAC3 eaf8f1e8-cb98-4865-a266-4d9fd9e230b2 41c974f6cb8b72533ed03baf73150ff4 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00578.WXS.N C3N-00578 LUAD WXS blood_normal CPT0069450002 CPT0069450002.WholeExome.RP-1303.bam 30379016920 BAM aligned CPTAC3 c683eb3d-c6ba-4d36-bf00-cf1133ffb1ff 52f1cf6dec5c09c23236c924a065a6ab {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00578.WXS.N.hg38 C3N-00578 LUAD WXS blood_normal CPT0069450002 85b468e2-00ad-4d47-8a84-9fca723b10f1_gdc_realn.bam 41055951318 BAM harmonized CPTAC3 7cede50e-f560-49e7-84a8-8e49ef4ec37b 9df461cb82fae09fe5c974f13e32ad0d {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal"} -C3N-00578.WXS.T C3N-00578 LUAD WXS tumor CPT0069360006 CPT0069360006.WholeExome.RP-1303.bam 35306632145 BAM aligned CPTAC3 2c96bcb1-b48f-447d-8f87-26af6847d2bf 65c55585fe29b5377441c8449912e192 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor"} -C3N-00578.WXS.T.hg38 C3N-00578 LUAD WXS tumor CPT0069360006 18315848-20f3-4ef7-a5d1-c0768c4984c6_gdc_realn.bam 48831110243 BAM harmonized CPTAC3 627c0174-3f47-4613-a77d-f19df49e01b2 c8acd28de6901e124592f31f75fc8942 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor"} -C3N-00579.MethArray.Green.A C3N-00579 LUAD Methylation_Array tissue_normal CPT0069550009 203027390089_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 047bd299-3385-4e16-b965-60a1d36bf8ed b56aea3c38d318477156aed0919fd312 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.MethArray.Green.T C3N-00579 LUAD Methylation_Array tumor CPT0069520009 202176290105_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0143e706-4caa-48e1-9c7d-7ed75660892c ed1df4aab03f171e2d04c6cc03755490 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor"} -C3N-00579.MethArray.Red.A C3N-00579 LUAD Methylation_Array tissue_normal CPT0069550009 203027390089_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 f58b0cfe-3611-4fc8-9f82-2bbe5ed90b0b 0093f19f343c57499536142e78031328 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.MethArray.Red.T C3N-00579 LUAD Methylation_Array tumor CPT0069520009 202176290105_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 c2081311-a97c-477e-abbd-69b3c2d0ab53 63ac33f3671c82fbb94a2f93aac9383c {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor"} -C3N-00579.miRNA-Seq.A.hg38 C3N-00579 LUAD miRNA-Seq tissue_normal CPT0069550006 2784f480-349a-4a71-a1f9-e1bb74af9b0e_mirnaseq_gdc_realn.bam 384201498 BAM harmonized CPTAC3 94e584b7-4626-4d84-a4fa-2fee3c9fef0f 1d445468c9ba96d031540c4eef45de1a {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.miRNA-Seq.S11_L008_R1.T C3N-00579 LUAD miRNA-Seq tumor CPT0069520006 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L008_R1_001.unaln.bam 226871677 BAM S11_L008_R1 unaligned CPTAC3 39e0eb8b-fe72-488b-82f1-a9109bb1039a eb76d13bdbec2771113e9425a363b4a9 {"aliquot_tag": "ALQ_885e747f", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00579.miRNA-Seq.S1_L007_R1.A C3N-00579 LUAD miRNA-Seq tissue_normal CPT0069550006 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L007_R1_001.unaln.bam 352977661 BAM S1_L007_R1 unaligned CPTAC3 96437d9f-964f-483d-aee0-90c693c59277 d62a8c25060d70298f4f1c14992bfa72 {"aliquot_tag": "ALQ_3a7ea86f", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.miRNA-Seq.T.hg38 C3N-00579 LUAD miRNA-Seq tumor CPT0069520006 0e51f041-efdc-4658-8d5f-4e5cdd9e2f08_mirnaseq_gdc_realn.bam 246067814 BAM harmonized CPTAC3 cda905b8-3106-4143-be6e-145c0eaf3fdc 911d6e9799c160bf057d32d4c4e179bb {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor"} -C3N-00579.RNA-Seq.chimeric.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.chimeric.gdc_realn.bam 53176565 BAM chimeric harmonized CPTAC3 73e5917c-8fe7-4c16-b9a6-72fd5c2faa67 7fe0759607f9b613bf54feb033968806 {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.RNA-Seq.chimeric.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.chimeric.gdc_realn.bam 145125280 BAM chimeric harmonized CPTAC3 5db61210-cb1f-4140-958a-a9d32d672b8f b6ea934def3422434ff8be9a355d6234 {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor"} -C3N-00579.RNA-Seq.genomic.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.genomic.gdc_realn.bam 8680766740 BAM genomic harmonized CPTAC3 78f0569d-9c6e-4f01-88cb-7cfee33ce236 89c344019c2a2468075f897c26eab674 {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.RNA-Seq.genomic.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.genomic.gdc_realn.bam 9180590500 BAM genomic harmonized CPTAC3 e1c93d13-2cec-445e-bd45-64d01f9fd71a aa30626722588c598532c4893dcabe85 {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor"} -C3N-00579.RNA-Seq.S21_L006_R1.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R1_001.fastq.gz 4006896917 FASTQ S21_L006_R1 unaligned CPTAC3 887d82b0-c520-4966-8d54-89acb12a45b1 cd9eb427996a89f69f9f719b9c461925 {"aliquot_tag": "ALQ_3a7ea86f", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.RNA-Seq.S21_L006_R2.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R2_001.fastq.gz 3795414502 FASTQ S21_L006_R2 unaligned CPTAC3 b83f8026-deb8-4ee0-bc10-27704ff2d3e1 d1321f8d9bf84f97e8348989713fc632 {"aliquot_tag": "ALQ_3a7ea86f", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.RNA-Seq.S4_L001_R1.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 4570401781 FASTQ S4_L001_R1 unaligned CPTAC3 2dc06519-2912-4a7c-bb3b-0e5e6be9dea2 9721141ad078c349e75f8b1e14f4c200 {"aliquot_tag": "ALQ_885e747f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00579.RNA-Seq.S4_L001_R2.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4925248612 FASTQ S4_L001_R2 unaligned CPTAC3 12a9c469-d3a1-4230-aa37-b438f58e5b5f 2682af2b05a1c89bac02f286653d4e26 {"aliquot_tag": "ALQ_885e747f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00579.RNA-Seq.transcriptome.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.transcriptome.gdc_realn.bam 7969596382 BAM transcriptome harmonized CPTAC3 c0551c4d-ac80-4f7c-90ff-0f5dbe6a49cc 193f6bb3cf88b979ec7b9e7bf225a507 {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.RNA-Seq.transcriptome.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.transcriptome.gdc_realn.bam 12307238605 BAM transcriptome harmonized CPTAC3 1ed88ddd-b7ca-4cc3-8cbd-086612d07e2b 8d43898b12b9dbd6aa7fbc17845561f4 {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor"} -C3N-00579.WGS.A C3N-00579 LUAD WGS tissue_normal CPT0069550009 CPT0069550009.WholeGenome.RP-1303.bam 60627770913 BAM aligned CPTAC3 95ec4b31-9cf5-4591-aacc-7f3c8b417995 9cde82338adebafd69edd5f3c7125027 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.WGS.A.hg38 C3N-00579 LUAD WGS tissue_normal CPT0069550009 dd05d42d-edb7-4e61-98ef-cba8adb51d3a_wgs_gdc_realn.bam 89332386200 BAM harmonized CPTAC3 d01613ea-2928-4867-97ea-6824d8c7a9b7 be46c0f09f488cf4ce94ae0512f41f1c {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.WGS.N C3N-00579 LUAD WGS blood_normal CPT0069630002 CPT0069630002.WholeGenome.RP-1303.bam 89873512591 BAM aligned CPTAC3 5fd49d1c-ffde-45a1-9b80-c4750c13fd68 1ee0aeaa13bc4a63cccdb956f659550b {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal"} -C3N-00579.WGS.N.hg38 C3N-00579 LUAD WGS blood_normal CPT0069630002 9d12c14d-211d-4cf6-af81-4fc8dd1a3137_gdc_realn.bam 135812098777 BAM harmonized CPTAC3 25253adb-3482-4cd5-b105-2885c9ad1596 034f525a991ffc2a95b8c811705dcc49 {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal"} -C3N-00579.WGS.T C3N-00579 LUAD WGS tumor CPT0069520009 CPT0069520009.WholeGenome.RP-1303.bam 84371989350 BAM aligned CPTAC3 193da44d-f8e7-4fa2-a7ea-626ce59d8396 01e7b49b761eac227f3db4b68e091f8b {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor"} -C3N-00579.WGS.T.hg38 C3N-00579 LUAD WGS tumor CPT0069520009 3b0ec8ca-2d1d-4773-a8f7-03788069163c_gdc_realn.bam 131776545194 BAM harmonized CPTAC3 dd45507c-d3be-448e-b5b4-a64949b03e9d b44ef401b515d50c38192178826ec425 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor"} -C3N-00579.WXS.A C3N-00579 LUAD WXS tissue_normal CPT0069550009 CPT0069550009.WholeExome.RP-1303.bam 24768910113 BAM aligned CPTAC3 4e31c3ca-c51d-4716-96e9-dda86610e44e 076260cf351a818b8b64a5f69ee70f57 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.WXS.A.hg38 C3N-00579 LUAD WXS tissue_normal CPT0069550009 dd05d42d-edb7-4e61-98ef-cba8adb51d3a_wxs_gdc_realn.bam 33703011159 BAM harmonized CPTAC3 3163302d-193b-48a2-9905-889364e112c2 ef5492a4ff5b1b7879bfc696e77e0565 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00579.WXS.N C3N-00579 LUAD WXS blood_normal CPT0069630002 CPT0069630002.WholeExome.RP-1303.bam 27978259361 BAM aligned CPTAC3 450bab19-1e52-44da-aa6b-57394755a9cd d3394c958b1e49d01b8e9c16f0639ab6 {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal"} -C3N-00579.WXS.N.hg38 C3N-00579 LUAD WXS blood_normal CPT0069630002 9d12c14d-211d-4cf6-af81-4fc8dd1a3137_gdc_realn.bam 37838325747 BAM harmonized CPTAC3 d50d6aed-bd34-40b2-a2d6-2d60776e9e15 e81731e9eac90689283851b95170ce5b {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal"} -C3N-00579.WXS.T C3N-00579 LUAD WXS tumor CPT0069520009 CPT0069520009.WholeExome.RP-1303.bam 36542592958 BAM aligned CPTAC3 88a7c9f6-2334-47af-b541-826098847ed8 d1615e33a3e7ec0334c7e41540c3ff12 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor"} -C3N-00579.WXS.T.hg38 C3N-00579 LUAD WXS tumor CPT0069520009 3b0ec8ca-2d1d-4773-a8f7-03788069163c_gdc_realn.bam 50611261435 BAM harmonized CPTAC3 2da9db93-353a-467b-8fbf-3ed09771baf5 60c68a69eb94145e5bc3d6e52cfab0e6 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor"} -C3N-00580.MethArray.Green.A C3N-00580 LUAD Methylation_Array tissue_normal CPT0069720009 203027390073_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d9f0ae5d-a222-42f2-9845-2f1d3ad081bc 5b12068aa18d40cb13ea13bc224c30c0 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.MethArray.Green.T C3N-00580 LUAD Methylation_Array tumor CPT0069700006 202184990052_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 df41d75d-9e32-4468-aebf-0bfe7e1fd913 936361e11718418316757e0d81a52276 {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor"} -C3N-00580.MethArray.Red.A C3N-00580 LUAD Methylation_Array tissue_normal CPT0069720009 203027390073_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 1a52bfe7-8d52-4b28-9388-ddc8d8ef59c8 beb0160139ee238931acaf32486091b9 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.MethArray.Red.T C3N-00580 LUAD Methylation_Array tumor CPT0069700006 202184990052_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 22a6641d-92a3-4d14-9545-baa4b804e65c fdbdcbf1e1147808c25ed377ce0e308d {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor"} -C3N-00580.miRNA-Seq.A.hg38 C3N-00580 LUAD miRNA-Seq tissue_normal CPT0069720006 490db012-6b13-4742-b471-f36d66585622_mirnaseq_gdc_realn.bam 275374710 BAM harmonized CPTAC3 9259ba44-d113-408b-8f6c-105e83d3546f e3a4c22ac6cb3bc893f2062808f3ae6b {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.miRNA-Seq.S27_L002_R1.T C3N-00580 LUAD miRNA-Seq tumor CPT0069700009 190813_UNC32-K00270_0196_AH5MCWBBXY_TATAAT_S27_L002_R1_001.unaln.bam 274466771 BAM S27_L002_R1 unaligned CPTAC3 84dbbd5e-ca7c-4cd9-8080-2870f641ddfd df8f6b6e81e5dfd1f8ad9fa6c0b76a8c {"aliquot_tag": "ALQ_2fe99b85", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00580.miRNA-Seq.S2_L007_R1.A C3N-00580 LUAD miRNA-Seq tissue_normal CPT0069720006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L007_R1_001.unaln.bam 256419810 BAM S2_L007_R1 unaligned CPTAC3 7e426b2c-003c-4e0c-b2fa-2549908705b8 58905d2df76382cd957d2d4960eaa75f {"aliquot_tag": "ALQ_c596d574", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.miRNA-Seq.T.hg38 C3N-00580 LUAD miRNA-Seq tumor CPT0069700009 14aedc14-7107-4fdf-83d1-78fa3576403d_mirnaseq_gdc_realn.bam 305210675 BAM harmonized CPTAC3 bc0f99e7-2817-415c-95f8-584e651364b1 81f557b8e67ed2c7f207a8a932ed17d6 {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor"} -C3N-00580.RNA-Seq.chimeric.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.chimeric.gdc_realn.bam 74274362 BAM chimeric harmonized CPTAC3 2ae004b2-4c5b-4e39-8dfe-578e31ac3d99 e803bd3e6406f3fb25820a48559c246d {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.RNA-Seq.chimeric.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.chimeric.gdc_realn.bam 20020809 BAM chimeric harmonized CPTAC3 7dfe7342-f771-46af-8593-a119801f6f29 18163e2bcaa0b29cc8cc718e2fb032dd {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor"} -C3N-00580.RNA-Seq.genomic.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.genomic.gdc_realn.bam 9094184406 BAM genomic harmonized CPTAC3 6e5c8d86-5fda-4263-ade7-e37f5a630081 04bbf180740a37b66a353d00c53ce55f {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.RNA-Seq.genomic.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.genomic.gdc_realn.bam 7270226363 BAM genomic harmonized CPTAC3 aa4bc7a3-a542-46d1-be9f-89bcbaf3a645 6dcd0e0a7674364d99ea64d1cc0f5a06 {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor"} -C3N-00580.RNA-Seq.S12_L003_R1.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R1_001.fastq.gz 3566734047 FASTQ S12_L003_R1 unaligned CPTAC3 c50c7d37-c119-4937-81ae-f49516e5ba50 85be4975c116fb485155ccf150f2bd4d {"aliquot_tag": "ALQ_2fe99b85", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00580.RNA-Seq.S12_L003_R2.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R2_001.fastq.gz 3841244008 FASTQ S12_L003_R2 unaligned CPTAC3 83fa11c9-a986-4ad2-8037-ad8d185c0a1e efb8296aa43e419b23f481eacda3b8eb {"aliquot_tag": "ALQ_2fe99b85", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00580.RNA-Seq.S20_L006_R1.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R1_001.fastq.gz 4342183966 FASTQ S20_L006_R1 unaligned CPTAC3 e738c358-76df-42d6-b0ad-b608c5e07e41 e939556fa339d46d8ac2a2265903d4c2 {"aliquot_tag": "ALQ_c596d574", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.RNA-Seq.S20_L006_R2.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R2_001.fastq.gz 4704423548 FASTQ S20_L006_R2 unaligned CPTAC3 890e5c7b-13c7-45bb-9744-458dc680d92c 3e9c88ed189e1bcd5a321b0b77025e3a {"aliquot_tag": "ALQ_c596d574", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.RNA-Seq.transcriptome.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.transcriptome.gdc_realn.bam 10708702180 BAM transcriptome harmonized CPTAC3 1e75e99d-5244-42b9-b705-627ca9b54ad8 7ead1828c2b78e83e6f3de473333ed00 {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.RNA-Seq.transcriptome.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.transcriptome.gdc_realn.bam 11369332850 BAM transcriptome harmonized CPTAC3 f4d7419c-00ee-417b-aeee-adf87e8a6c98 54eb2d097e557308d7a589c75f8cf5a5 {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor"} -C3N-00580.WGS.A C3N-00580 LUAD WGS tissue_normal CPT0069720009 CPT0069720009.WholeGenome.RP-1303.bam 69666223596 BAM aligned CPTAC3 530e1699-d963-401c-a3f5-f834554d4f7c c464985187717ff6042d176f5798bff7 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.WGS.A.hg38 C3N-00580 LUAD WGS tissue_normal CPT0069720009 cb195391-5ebe-4354-b07c-60f3a485eb8b_wgs_gdc_realn.bam 102642323498 BAM harmonized CPTAC3 2ac28301-49ff-476a-8f58-26bc91b732e7 fe2a87e05318b8c7cd1b81125df02dab {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.WGS.N C3N-00580 LUAD WGS blood_normal CPT0069800002 CPT0069800002.WholeGenome.RP-1303.bam 70647888050 BAM aligned CPTAC3 e6aff349-227c-4e5c-bfcc-f04ac3e199bc 3d9950467f630e689cbcdf88577e7ffe {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00580.WGS.N.hg38 C3N-00580 LUAD WGS blood_normal CPT0069800002 6e15d0f3-0d77-4d72-aacc-d35c497ec69c_gdc_realn.bam 106838139593 BAM harmonized CPTAC3 c9648eab-b01f-4ab0-8ad5-a63b7323aa0e 8f13c3e6240978076aa3401e8849c030 {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00580.WGS.T C3N-00580 LUAD WGS tumor CPT0069700006 CPT0069700006.WholeGenome.RP-1303.bam 67928516008 BAM aligned CPTAC3 7844c094-e966-4da0-b381-8d5bee996d2d 10c6fdbbaacc4031ef7d9f966ab986c2 {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor"} -C3N-00580.WGS.T.hg38 C3N-00580 LUAD WGS tumor CPT0069700006 72ed37e7-d1fe-4c50-822f-e21c597750ba_gdc_realn.bam 101339640981 BAM harmonized CPTAC3 51798e76-3023-4794-949f-612fb9f29133 507b1277f98ffa3996b8e9a08cc168b7 {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor"} -C3N-00580.WXS.A C3N-00580 LUAD WXS tissue_normal CPT0069720009 CPT0069720009.WholeExome.RP-1303.bam 26760905595 BAM aligned CPTAC3 f8941389-8d17-4d30-9bfe-490da25f57c6 a0b1e64cbb98a9838f0f7c4a9003e405 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.WXS.A.hg38 C3N-00580 LUAD WXS tissue_normal CPT0069720009 cb195391-5ebe-4354-b07c-60f3a485eb8b_wxs_gdc_realn.bam 36662408680 BAM harmonized CPTAC3 50807bdd-58bf-4b01-bb03-5acec354b22e 31a5105156d114a3c6c05f40fb09b672 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00580.WXS.N C3N-00580 LUAD WXS blood_normal CPT0069800002 CPT0069800002.WholeExome.RP-1303.bam 40081364322 BAM aligned CPTAC3 42860b7d-6bff-4cfc-b045-5c2a28a25b4c 45a8584b580a475601a3ce227c65fccc {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00580.WXS.N.hg38 C3N-00580 LUAD WXS blood_normal CPT0069800002 6e15d0f3-0d77-4d72-aacc-d35c497ec69c_gdc_realn.bam 56038595708 BAM harmonized CPTAC3 83ec5562-2cf9-4ddd-8c00-45b3a6d470e1 9b8949a2d52f3e3e3edce8dfe29f2cc4 {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00580.WXS.T C3N-00580 LUAD WXS tumor CPT0069700006 CPT0069700006.WholeExome.RP-1303.bam 37097845897 BAM aligned CPTAC3 d98c9022-538b-46f1-a8f3-17d031b2ab41 8ee63d15fd405f1f808aa16cd6d7c1de {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor"} -C3N-00580.WXS.T.hg38 C3N-00580 LUAD WXS tumor CPT0069700006 72ed37e7-d1fe-4c50-822f-e21c597750ba_gdc_realn.bam 51193005090 BAM harmonized CPTAC3 57a9a0dd-4854-4e7b-8214-c7701474fe6d dbe58610eaced2705cc239e122a1849c {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_11196721.miRNA-Seq.S5_L004_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081970006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATTTT_S5_L004_R1_001.unaln.bam 327645548 BAM S5_L004_R1 unaligned CPTAC3 99b94604-81ec-4d48-907e-716d1acc95af c69c388e3a3af34853965f11a3f8fd71 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_11196721.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081970006 00366798-fac0-4ca4-9a30-4e16cede240b_mirnaseq_gdc_realn.bam 361132425 BAM harmonized CPTAC3 53d12e0a-d311-4122-9ed2-3669628a5d2c d6beabb83de31e8b57bff4415dd8efc8 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_11196721.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.chimeric.gdc_realn.bam 201061834 BAM chimeric harmonized CPTAC3 e1b2ded7-c109-412e-ad93-cc3d12ed0f0f 06996787d88f5081945bd13fc8ec8f5d {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_11196721.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.genomic.gdc_realn.bam 8344442177 BAM genomic harmonized CPTAC3 8ea07771-646a-46fe-90fb-df4380c93891 e025c1b1fbe53cb2b0735c30e79d139d {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_11196721.RNA-Seq.S13_L004_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R1_001.fastq.gz 4092568482 FASTQ S13_L004_R1 unaligned CPTAC3 980a3cfc-b38a-4492-ad63-75639c800e22 a7b163d7830aeb12b463ff1ebf0d0405 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_11196721.RNA-Seq.S13_L004_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R2_001.fastq.gz 4608167933 FASTQ S13_L004_R2 unaligned CPTAC3 5774ceef-ed62-42c6-bc2e-e854e2853ef4 f0b5b332152ad17ae6637a74fcaad534 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_11196721.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.transcriptome.gdc_realn.bam 10321705528 BAM transcriptome harmonized CPTAC3 94b32025-6b3d-44ff-8144-df6d6e1ccdf6 7f988866b8e0dec8eb6d839a54b18a4a {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_2561edf5.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0082000009 204367470124_R02C01_Grn.idat 13677882 IDAT Green NA CPTAC3 37b8b01b-8c19-4995-a162-6b8be926e7c9 9ac977b347812205ce2e9e88ca26b13b {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_2561edf5.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0082000009 204367470124_R02C01_Red.idat 13677882 IDAT Red NA CPTAC3 9c885e48-c8a0-4c8c-9f67-898f256a2578 fa21fd146f076b42a90df5907fd2e87c {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_2561edf5.WGS.T C3N-00646 CCRCC WGS tumor CPT0082000009 CPT0082000009.WholeGenome.RP-2158.bam 23065839447 BAM aligned CPTAC3 6ecfe625-d073-4c21-9dda-10085982409c 0a330ea6f832e0913e93b50d0d9c329f {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_2561edf5.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0082000009 174b44d6-d8b9-4b64-9ff4-44740bcf6de3_wgs_gdc_realn.bam 66376283118 BAM harmonized CPTAC3 d755260b-7dca-4c69-86ef-fd97341e1958 508aebfe53757fe7d1af01a782091fd8 {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_2561edf5.WXS.T C3N-00646 CCRCC WXS tumor CPT0082000009 CPT0082000009.WholeExome.RP-1303.bam 21753433747 BAM aligned CPTAC3 5ce44bf2-33d0-45a3-a24b-4af3178f2c5a f4a989433bbe2d7bcf6d257d5c3cbf14 {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_2561edf5.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0082000009 174b44d6-d8b9-4b64-9ff4-44740bcf6de3_wxs_gdc_realn.bam 30005659322 BAM harmonized CPTAC3 5b0c1ac9-6e44-40ab-9c63-3bc9a0a4b89c d6d741ea3f455103e476af808dda284b {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_74f1ddf7.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0081980008 204372030023_R01C01_Grn.idat 13677895 IDAT Green NA CPTAC3 87c1ec50-0cf1-4dd8-827c-a224101e3eac 2e029695a24693566b3ab8aaf99a771e {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_74f1ddf7.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0081980008 204372030023_R01C01_Red.idat 13677895 IDAT Red NA CPTAC3 842f8742-31bb-4626-95f5-fd60711a85e2 e440a5559c1fd06691b029b02c212808 {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_74f1ddf7.WGS.T C3N-00646 CCRCC WGS tumor CPT0081980008 CPT0081980008.WholeGenome.RP-2158.bam 31569823975 BAM aligned CPTAC3 5d0224bc-1902-420c-b79b-4064065a3c27 48ca33447647be3d42b2f78427b5363a {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_74f1ddf7.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0081980008 ac290967-e06a-48cc-9d8a-0a687a8b1fc8_wgs_gdc_realn.bam 97841636613 BAM harmonized CPTAC3 e7b26e1b-0282-47fb-bc22-3f373c8f0149 317993dce43ca5d5cee8c6be756e55fb {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_74f1ddf7.WXS.T C3N-00646 CCRCC WXS tumor CPT0081980008 CPT0081980008.WholeExome.RP-1303.bam 20906214143 BAM aligned CPTAC3 ee040be6-4430-4591-9d9c-a63f92a63546 7406045262207e71d4469344eec53c68 {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_74f1ddf7.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0081980008 ac290967-e06a-48cc-9d8a-0a687a8b1fc8_wxs_gdc_realn.bam 29537925816 BAM harmonized CPTAC3 777ad0ea-81a9-405b-a300-59008cbee1ae 705e650900fa2ba5b25bff32bbeb64d1 {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_81a67ab0.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0081970009 204372030087_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 3f491707-af8b-492f-86ef-ee19e4d2e851 f463511ef9da13dac0b59709845c68a7 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_81a67ab0.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0081970009 204372030087_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 bc5eb53e-19b0-4e15-b881-894da8df7efd 2c7ab8ca84c07d5235b2541df83120a2 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_81a67ab0.WGS.T C3N-00646 CCRCC WGS tumor CPT0081970009 CPT0081970009.WholeGenome.RP-2158.bam 21135692138 BAM aligned CPTAC3 6ae08801-7122-4acc-93b6-7583eb12031f 2f41c32b8cb58f8fc5f0562938b06a03 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_81a67ab0.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0081970009 6924323a-8bd8-4aa2-8a97-0c739132af78_wgs_gdc_realn.bam 60031371647 BAM harmonized CPTAC3 9d04f641-1d4d-436f-bc50-09ee0229f0dd cd41b79fbddfb8cdf3d5e1e19f56b9a6 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_81a67ab0.WXS.T C3N-00646 CCRCC WXS tumor CPT0081970009 CPT0081970009.WholeExome.RP-1303.bam 19796533988 BAM aligned CPTAC3 b77ceaed-8ed8-4315-97e9-97f20598bac4 08c738067a4c058f8dbc128995d40f77 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_81a67ab0.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0081970009 6924323a-8bd8-4aa2-8a97-0c739132af78_wxs_gdc_realn.bam 26788481843 BAM harmonized CPTAC3 e39f321e-de17-4224-8a55-a8fd6558295c fbf43a2c0c60309f5892080da9c938ab {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_a40a14a.miRNA-Seq.S48_L004_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081980005 200526_UNC32-K00270_0248_BHH7WFBBXY_GGTAGC_S48_L004_R1_001.unaln.bam 289942848 BAM S48_L004_R1 unaligned CPTAC3 247bcbef-5400-419f-8db8-acb8b86ade92 30c455b3d90cb4af6d08eac900ee39a3 {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_a40a14a.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081980005 952d3262-f49b-4361-9f32-697c75935506_mirnaseq_gdc_realn.bam 326665666 BAM harmonized CPTAC3 10f9d0b6-0845-4156-9b5d-8b535ea9414e f08f4da6501233a413e9e8e3e62acca9 {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_a40a14a.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.chimeric.gdc_realn.bam 106248398 BAM chimeric harmonized CPTAC3 373be1f0-c685-4241-bc38-eb2aefd7ee43 87d845d52a36bfad02e2d2ae0647ef5e {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_a40a14a.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.genomic.gdc_realn.bam 8375615893 BAM genomic harmonized CPTAC3 053dedc6-4b87-48e8-bbd4-720db0966efc 295f46af1628bfde36f2f3085cebb00d {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_a40a14a.RNA-Seq.S2_L001_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R1_001.fastq.gz 3845346265 FASTQ S2_L001_R1 unaligned CPTAC3 787e6ab3-0537-4dae-876f-591c36d1835d 1de65ffd9ea9afbe322929e0124899cd {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_a40a14a.RNA-Seq.S2_L001_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R2_001.fastq.gz 4730561082 FASTQ S2_L001_R2 unaligned CPTAC3 afa8aabc-841a-4780-88bd-096696b28751 fdf932132bf3cd055a22f4aa53baf39e {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_a40a14a.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.transcriptome.gdc_realn.bam 9974597410 BAM transcriptome harmonized CPTAC3 8a7096b1-aab4-4c81-a203-ea5f4c8bc8e1 51d54ec3c3266854ea77e56efe5d9ba3 {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_b5def064.miRNA-Seq.S6_L004_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0082000006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCAACA_S6_L004_R1_001.unaln.bam 191987397 BAM S6_L004_R1 unaligned CPTAC3 077f2974-0d74-4a69-a446-9200ffd815aa dadce38f0225e5e794c9c6f79f829cbb {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_b5def064.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0082000006 4da47641-53c8-48f2-aab9-7711dd6efa14_mirnaseq_gdc_realn.bam 216197628 BAM harmonized CPTAC3 8e50ba29-1709-443e-9d9a-1c3bb742c5aa beb27dc43a27f8e7f340e11315f858e9 {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_b5def064.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.chimeric.gdc_realn.bam 127443137 BAM chimeric harmonized CPTAC3 2628656b-7138-476f-80be-92e1e2ff89da bfe7e322e7bcc7ddc5d3abe9d2df231d {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_b5def064.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.genomic.gdc_realn.bam 6944732932 BAM genomic harmonized CPTAC3 ba426202-d168-4bb8-9938-0b55f8b89cd7 b8ebd4cf9745d1d21da1dfa0a6291de6 {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_b5def064.RNA-Seq.S15_L004_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 3334806323 FASTQ S15_L004_R1 unaligned CPTAC3 58135a5f-972c-46ae-b682-2bceead9893f dadcb3134b1d81906b352540bd555de2 {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_b5def064.RNA-Seq.S15_L004_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 3831563373 FASTQ S15_L004_R2 unaligned CPTAC3 85e77e19-8680-44c9-814f-638fd0c5444e 29cf078ec0ff2f012458d7437393165e {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00646.DUP_b5def064.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.transcriptome.gdc_realn.bam 9259926899 BAM transcriptome harmonized CPTAC3 2594fe19-68af-46a2-a0e2-2bba635a7f15 2add3b627f8d476d90a7e3d80f7e8f7d {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00646.MethArray.Green.A C3N-00646 CCRCC Methylation_Array tissue_normal CPT0082010009 204930640061_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c2e3843a-d03e-4570-8d7f-25979fafe0cc 8909becbd4e4088c6b8a511b170dc30b {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0081990006 202184900111_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 618149c4-73cf-4741-8f97-94c76712edc4 5102866a074a0f68528b3bb254727788 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor"} -C3N-00646.MethArray.Red.A C3N-00646 CCRCC Methylation_Array tissue_normal CPT0082010009 204930640061_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 ea6180fe-1488-4dea-81dd-051c1b833632 761cb68e34f0c799626ee65fb2aa47f7 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0081990006 202184900111_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 3e36a198-fe37-420a-8db3-85c47f6edeea 96e6091a86a4b7b91c5afeb14334a713 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor"} -C3N-00646.miRNA-Seq.A.hg38 C3N-00646 CCRCC miRNA-Seq tissue_normal CPT0082010006 cb0435c2-ec77-448e-bce6-89b7fa2015d2_mirnaseq_gdc_realn.bam 216218643 BAM harmonized CPTAC3 2bc6a846-26aa-4608-9cca-eaab78676a82 914ea05e1236f93fcf02e3fff8c99614 {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.miRNA-Seq.S27_L002_R1.A C3N-00646 CCRCC miRNA-Seq tissue_normal CPT0082010006 181108_UNC31-K00269_0163_BH23TVBBXY_ATTCCT_S27_L002_R1_001.unaln.bam 195010889 BAM S27_L002_R1 unaligned CPTAC3 ead4f01f-2e32-41da-8208-63d2b51d2835 80e5204f78784eb157e39867b833f6f0 {"aliquot_tag": "ALQ_88bed9d4", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.miRNA-Seq.S46_L002_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081990009 181113_UNC31-K00269_0164_AH23NNBBXY_CGTACG_S46_L002_R1_001.unaln.bam 245302766 BAM S46_L002_R1 unaligned CPTAC3 a294dd5b-3814-42c0-a477-de371ca9e62e e3ccfaf352ce8d111cbe27ff0f95919f {"aliquot_tag": "ALQ_3e96c4d1", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081990009 73ba6cb2-5933-4c53-9012-7bccf41fb2be_mirnaseq_gdc_realn.bam 267628726 BAM harmonized CPTAC3 f839995c-6dfb-442e-a278-d0709a870eef 59eb5ba6f50463a14ae5af1a62b623cd {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.RNA-Seq.chimeric.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.chimeric.gdc_realn.bam 63960130 BAM chimeric harmonized CPTAC3 b1f69044-a57e-404e-95d7-200466711dec 792eb47ab2b0f771c8a1e09b9d36c481 {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.chimeric.gdc_realn.bam 77721060 BAM chimeric harmonized CPTAC3 af99698d-cf6a-4b6a-b7b0-936ea8e81676 312a65c7ed9d97c9a270e9ab2638241e {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.RNA-Seq.genomic.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.genomic.gdc_realn.bam 8572819800 BAM genomic harmonized CPTAC3 1c07d9b7-ba7f-4e51-b94f-efc917eb584c e828e7471bf613ebc63de580a8df8e0d {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.genomic.gdc_realn.bam 7240241221 BAM genomic harmonized CPTAC3 e88e9951-a013-4c34-b84c-de284309a274 0c884e8dad4038c861f95895e4aff593 {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.RNA-Seq.S4_L001_R1.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R1_001.fastq.gz 4063559955 FASTQ S4_L001_R1 unaligned CPTAC3 5b16b2e1-c184-43dd-8b14-44064ff163da a27e28e84f5db3523929a77401140bce {"aliquot_tag": "ALQ_88bed9d4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.RNA-Seq.S4_L001_R2.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R2_001.fastq.gz 4438333168 FASTQ S4_L001_R2 unaligned CPTAC3 85a46f67-ca77-419b-af2b-936000d066e6 13077472c88861794f700f30b27f2315 {"aliquot_tag": "ALQ_88bed9d4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.RNA-Seq.S7_L008_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R1_001.fastq.gz 3514252397 FASTQ S7_L008_R1 unaligned CPTAC3 5d6d5ed2-ad55-4495-98ad-1c29f1d4eae6 5d4f4640c9b399c722d024cd1525f8dd {"aliquot_tag": "ALQ_3e96c4d1", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.RNA-Seq.S7_L008_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R2_001.fastq.gz 3858205480 FASTQ S7_L008_R2 unaligned CPTAC3 59f1b810-71de-45d3-9d50-96e3366fbe8f 935e6da879a1d69d92de13f90fd16f9c {"aliquot_tag": "ALQ_3e96c4d1", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00646.RNA-Seq.transcriptome.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.transcriptome.gdc_realn.bam 9609610273 BAM transcriptome harmonized CPTAC3 7aac4c0e-4d4a-4f70-bb8d-5042c0b52bbb 1367d1b724f0447dc621b682096031d4 {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.transcriptome.gdc_realn.bam 8929249617 BAM transcriptome harmonized CPTAC3 f124fd01-8dad-4b9d-b1f6-5013c217af38 8cfebd012e666e400b6725f96ff48e91 {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor"} -C3N-00646.WGS.A C3N-00646 CCRCC WGS tissue_normal CPT0082010009 CPT0082010009.WholeGenome.RP-1303.bam 57594115284 BAM aligned CPTAC3 e560fcb0-1c4b-4b2c-890e-e5695dae134a 4bbefa7956c7c5e5f2b8dc9fc8ddd68a {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.WGS.A.hg38 C3N-00646 CCRCC WGS tissue_normal CPT0082010009 7b64790d-6ba3-4ed9-8997-b22c0c22348c_wgs_gdc_realn.bam 83937645760 BAM harmonized CPTAC3 4ab09da2-0bb0-4e43-995c-2a820e72e7bf c984cb3657aabafa99606f00bcb1b0f5 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.WGS.N C3N-00646 CCRCC WGS blood_normal CPT0082030002 CPT0082030002.WholeGenome.RP-1303.bam 70407859557 BAM aligned CPTAC3 803a4e52-a2bb-4e72-b18e-e998b26fc81b 4bc5a6888c448f4dcc1eec9e32a4d1a1 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-00646.WGS.N.hg38 C3N-00646 CCRCC WGS blood_normal CPT0082030002 cd161335-d26a-4e88-9cbf-412997314bc7_gdc_realn.bam 106674332920 BAM harmonized CPTAC3 283d6b63-f235-4335-9810-de281d782b0b 8b6fd8e229c9cdce3e5e3fa9b6cf1184 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-00646.WGS.T C3N-00646 CCRCC WGS tumor CPT0081990006 CPT0081990006.WholeGenome.RP-1303.bam 68730745075 BAM aligned CPTAC3 e864d4a5-c3c5-460e-8f89-e7f4203edcaa 052bb80f3d7910c8c6824c5731d4a159 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor"} -C3N-00646.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0081990006 decf1bd7-19b4-488c-a3ee-fec1eab0652d_gdc_realn.bam 102097246594 BAM harmonized CPTAC3 a646095d-8ce5-4b13-b663-88c237105880 0d737a9ac962dc64c7d5efa30c7655b4 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor"} -C3N-00646.WXS.A C3N-00646 CCRCC WXS tissue_normal CPT0082010009 CPT0082010009.WholeExome.RP-1303.bam 46568528796 BAM aligned CPTAC3 a3cad1a5-0828-42bf-8100-89d423dc52d0 19eb4d8657262d67162c2d51a131db14 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.WXS.A.hg38 C3N-00646 CCRCC WXS tissue_normal CPT0082010009 7b64790d-6ba3-4ed9-8997-b22c0c22348c_wxs_gdc_realn.bam 62721824878 BAM harmonized CPTAC3 0d2df8d1-4799-457e-a213-3784821eab49 e2bd754cb313c46cbfdb5d117624b427 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00646.WXS.N C3N-00646 CCRCC WXS blood_normal CPT0082030002 CPT0082030002.WholeExome.RP-1303.bam 26787959958 BAM aligned CPTAC3 88bb2978-cc22-4793-bd92-d547c6db4bba fc90b05693024a91f83e26b7d5dd1942 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-00646.WXS.N.hg38 C3N-00646 CCRCC WXS blood_normal CPT0082030002 cd161335-d26a-4e88-9cbf-412997314bc7_gdc_realn.bam 36018660531 BAM harmonized CPTAC3 76ce08e4-2fd8-40e7-a591-2bfb0a3826d7 0047bc5ac24651d2ad985f28cc064a22 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-00646.WXS.T C3N-00646 CCRCC WXS tumor CPT0081990006 CPT0081990006.WholeExome.RP-1303.bam 37964291811 BAM aligned CPTAC3 09c48bdf-dc11-4f57-ba46-9f51cd5d0886 196e492023f8db598d12d5bcb64e5314 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor"} -C3N-00646.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0081990006 decf1bd7-19b4-488c-a3ee-fec1eab0652d_gdc_realn.bam 53804459969 BAM harmonized CPTAC3 8c875266-61e6-4945-8e8b-c603b9b00b4b 4eedc060754705e3497d21a5f33dc6a3 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor"} -C3N-00647.MethArray.Green.A C3N-00647 CCRCC Methylation_Array tissue_normal CPT0210440006 204930630107_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e5a7a1dc-6c85-42b8-8e41-68113595cc30 d88d95a889aa705828b5d3c7538f8dfe {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.MethArray.Green.T C3N-00647 CCRCC Methylation_Array tumor CPT0210400010 203219760074_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 89f22404-d3e9-47d9-a9e3-5e47cea0a2f3 c80c9858d046b444eed8f7c500a328bd {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor"} -C3N-00647.MethArray.Red.A C3N-00647 CCRCC Methylation_Array tissue_normal CPT0210440006 204930630107_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 560eac63-1d40-45f6-90c1-fa72d3469821 6fb9151753098a796480b9809609c5f1 {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.MethArray.Red.T C3N-00647 CCRCC Methylation_Array tumor CPT0210400010 203219760074_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 cbd595f1-3f6e-475e-a544-2e8166219384 d446b91b6d2c8b184e07b65a443fac84 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor"} -C3N-00647.miRNA-Seq.A.hg38 C3N-00647 CCRCC miRNA-Seq tissue_normal CPT0210440009 eecc143b-740f-48ca-9790-a7d2543534d2_mirnaseq_gdc_realn.bam 215764881 BAM harmonized CPTAC3 b63ecb40-7770-40cc-b835-7fd136c3a157 755e2b04dd8751f9b2210a1566374f6a {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.miRNA-Seq.S15_L003_R1.A C3N-00647 CCRCC miRNA-Seq tissue_normal CPT0210440009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCAACA_S15_L003_R1_001.unaln.bam 197692655 BAM S15_L003_R1 unaligned CPTAC3 deca7625-a479-4aeb-b350-ed055199cccb 515d85a051eefa9c80aae0e0af4134e1 {"aliquot_tag": "ALQ_ed562ba7", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.miRNA-Seq.S25_L008_R1.T C3N-00647 CCRCC miRNA-Seq tumor CPT0210400008 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L008_R1_001.unaln.bam 315377914 BAM S25_L008_R1 unaligned CPTAC3 d656b556-72bf-44f5-a889-8f714b044de5 d91e568e85e9df40cb39415e62b43867 {"aliquot_tag": "ALQ_6fd1bdf1", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00647.miRNA-Seq.T.hg38 C3N-00647 CCRCC miRNA-Seq tumor CPT0210400008 52ec4fc9-1614-4ad9-9cce-dcf6b764bca8_mirnaseq_gdc_realn.bam 346673868 BAM harmonized CPTAC3 a94f362b-95d5-45f2-bfba-b0d92fb49fc6 c25ca0bfff9fa207c4b5f081c36e58f9 {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor"} -C3N-00647.RNA-Seq.chimeric.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.chimeric.gdc_realn.bam 69974739 BAM chimeric harmonized CPTAC3 a3f4c5b7-ecb7-4fb1-b9f6-e5edd37532ee 87506f61f602c4bd6554c802dbc68556 {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.RNA-Seq.chimeric.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.chimeric.gdc_realn.bam 334879150 BAM chimeric harmonized CPTAC3 ab6212e6-8e5f-4e35-ab0d-c4d9a02cc040 12e001451ad806558337bbbccd7087d8 {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor"} -C3N-00647.RNA-Seq.genomic.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.genomic.gdc_realn.bam 8035826121 BAM genomic harmonized CPTAC3 efd4b1a1-6650-4cdc-a9ac-066e8fddf8dc 1e5a639e9283f324155f1538c6eaa10f {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.RNA-Seq.genomic.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.genomic.gdc_realn.bam 7210021290 BAM genomic harmonized CPTAC3 476a7086-5d5d-4364-bc0c-f549ef8f6175 74b621321ae16c42480bd88843a061cd {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor"} -C3N-00647.RNA-Seq.S12_L003_R1.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R1_001.fastq.gz 3870673538 FASTQ S12_L003_R1 unaligned CPTAC3 0958c9a6-369b-446a-86c0-ecc7e7d30019 ab5fa4f25fea7ba87a2eafd91c9c342c {"aliquot_tag": "ALQ_ed562ba7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.RNA-Seq.S12_L003_R2.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R2_001.fastq.gz 4267603425 FASTQ S12_L003_R2 unaligned CPTAC3 686db238-4c69-4121-bfe6-1068f0b41ffb 484a2c83903861373b32a81706321c1d {"aliquot_tag": "ALQ_ed562ba7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.RNA-Seq.S14_L004_R1.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3001959351 FASTQ S14_L004_R1 unaligned CPTAC3 6ff40b7b-a248-4450-83f0-fa2d4ab953e5 3bbeee77406cf3fc074c9127d1fa3026 {"aliquot_tag": "ALQ_6fd1bdf1", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00647.RNA-Seq.S14_L004_R2.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3277118265 FASTQ S14_L004_R2 unaligned CPTAC3 4518b250-94cf-447c-910e-a7a1d5a39dd6 5b1e5db428198e8583d15611c466dfb0 {"aliquot_tag": "ALQ_6fd1bdf1", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00647.RNA-Seq.transcriptome.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.transcriptome.gdc_realn.bam 9392145456 BAM transcriptome harmonized CPTAC3 a6c33467-852d-4f2e-9f8f-6bbc4157c05e ee0fb55d0c7d21c9c81f8cd11ee8eab1 {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.RNA-Seq.transcriptome.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.transcriptome.gdc_realn.bam 7078075094 BAM transcriptome harmonized CPTAC3 1310f290-d411-40f1-bc00-4e8858bb7dfa 815584c63bc80e50916fba6c3301bbf6 {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor"} -C3N-00647.WGS.N C3N-00647 CCRCC WGS blood_normal CPT0210520002 CPT0210520002.WholeGenome.RP-1303.bam 60176333204 BAM aligned CPTAC3 d81b93c2-8f20-4c98-8bcc-b314e1e74bd9 63b4cce799a44b2b3d5e00ddc51ae717 {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00647.WGS.N.hg38 C3N-00647 CCRCC WGS blood_normal CPT0210520002 992a2e30-9acc-44fb-96ed-e84ebe4f98f3_wgs_gdc_realn.bam 87429971417 BAM harmonized CPTAC3 aeef39b1-87b9-4242-af72-31c6a0d4682b d4f5f37c82d4b2699723dae1934161fe {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00647.WGS.T C3N-00647 CCRCC WGS tumor CPT0210400010 CPT0210400010.WholeGenome.RP-1303.bam 61913507239 BAM aligned CPTAC3 9c9ee284-1e7a-4565-a7b4-ddee29eb9317 bb23daf060232de84c932032825aeb72 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor"} -C3N-00647.WGS.T.hg38 C3N-00647 CCRCC WGS tumor CPT0210400010 adc4cdb2-337e-4f09-9dac-aed4b9566ed8_wgs_gdc_realn.bam 90350301604 BAM harmonized CPTAC3 f6dceaf1-e428-4b81-9215-828b86c8e45f 6453003c64d7506b5119f31ed7624c28 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor"} -C3N-00647.WXS.A C3N-00647 CCRCC WXS tissue_normal CPT0210440006 CPT0210440006.WholeExome.RP-1303.bam 22173332114 BAM aligned CPTAC3 977c91cf-ebf4-4b13-a1ed-9054ec7f5533 6884f57a32160a6afdfe2f2404b6992d {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.WXS.A.hg38 C3N-00647 CCRCC WXS tissue_normal CPT0210440006 0f8a4976-c745-4bc9-a1f8-631996bdafb5_wxs_gdc_realn.bam 30569939486 BAM harmonized CPTAC3 b55ada3d-1d2b-4864-a3a3-13eec4760dca afa3b2f4b439f28b510fbac662837cfd {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00647.WXS.N C3N-00647 CCRCC WXS blood_normal CPT0210520002 CPT0210520002.WholeExome.RP-1303.bam 22563240731 BAM aligned CPTAC3 d2e24b0b-0532-4688-bad3-86f98ff2c554 e41235078012f964d51f0ff4a0f51804 {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00647.WXS.N.hg38 C3N-00647 CCRCC WXS blood_normal CPT0210520002 992a2e30-9acc-44fb-96ed-e84ebe4f98f3_wxs_gdc_realn.bam 31614753039 BAM harmonized CPTAC3 a8a11eb2-00a7-4341-96c2-9789eb546534 aecd37951f8804259324917e0dfb9338 {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00647.WXS.T C3N-00647 CCRCC WXS tumor CPT0210400010 CPT0210400010.WholeExome.RP-1303.bam 25678106804 BAM aligned CPTAC3 9032cd28-050a-464c-9211-e076c994c3bd cbda42e700961248612d3b0b108ecb03 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor"} -C3N-00647.WXS.T.hg38 C3N-00647 CCRCC WXS tumor CPT0210400010 adc4cdb2-337e-4f09-9dac-aed4b9566ed8_wxs_gdc_realn.bam 35378460557 BAM harmonized CPTAC3 d3a42a86-a482-4bce-a271-5ba822cc04f5 0ebebca1d7e3ed4c9ecb7b267ac033ee {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor"} -C3N-00651.miRNA-Seq.S31_L002_R1.Tbm C3N-00651 AML miRNA-Seq tumor_bone_marrow CPT0437960002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGTACG_S31_L002_R1_001.unaln.bam 286710127 BAM S31_L002_R1 unaligned CPTAC3 53a14fd9-daa4-439e-a904-3b8098f8943e ad4590b65b766d90edc73e563c620710 {"aliquot_tag": "ALQ_4842f2e8", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.miRNA-Seq.Tbm.hg38 C3N-00651 AML miRNA-Seq tumor_bone_marrow CPT0437960002 ff790ae0-7c0a-4b28-974a-ce8d90c7e2f1_mirnaseq_gdc_realn.bam 322519562 BAM harmonized CPTAC3 32aeb272-8f3c-47ab-87c6-e2ec25143b07 282605612cfa75361840e792116eb288 {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.RNA-Seq.chimeric.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.chimeric.gdc_realn.bam 513840253 BAM chimeric harmonized CPTAC3 c15402d2-3c02-4f0a-9b3b-4351cda7b5ff 0a424b4be57fba257ae478987d5a740b {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.RNA-Seq.genomic.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.genomic.gdc_realn.bam 7288669934 BAM genomic harmonized CPTAC3 95909fff-4b0d-4997-9d6c-0b2856f485a7 31d4bd81718145824e32d90214732c17 {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.RNA-Seq.S13_L004_R1.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R1_001.fastq.gz 3593053427 FASTQ S13_L004_R1 unaligned CPTAC3 3d2903bf-750c-414c-ae65-b73f000afdd5 ee88e0310ba9e44ac88f5aa866753483 {"aliquot_tag": "ALQ_4842f2e8", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.RNA-Seq.S13_L004_R2.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R2_001.fastq.gz 3851693751 FASTQ S13_L004_R2 unaligned CPTAC3 1f438bff-6f91-4102-ba36-a6fb12ff7561 c17fcd42560043552e2838c2130ed018 {"aliquot_tag": "ALQ_4842f2e8", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.RNA-Seq.transcriptome.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.transcriptome.gdc_realn.bam 7332189722 BAM transcriptome harmonized CPTAC3 d17e1cc2-2d75-4fa5-8a0d-134dc84b5ebc 9f66e6e67221ec87ae498944da2c1259 {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.WGS.Tbm C3N-00651 AML WGS tumor_bone_marrow CPT0437950001 CPT0437950001.WholeGenome.RP-2158.bam 45869670373 BAM aligned CPTAC3 6b612e5c-013c-47b7-a319-7e5f4864733e c384ba33a9ac19c5c94635a046deb43f {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.WGS.Tbm.hg38 C3N-00651 AML WGS tumor_bone_marrow CPT0437950001 a34221e5-44cf-4b5e-9ee9-a6772f2846d7_wgs_gdc_realn.bam 137483279509 BAM harmonized CPTAC3 d8f76556-392f-4379-ba91-5dcf2251c503 6346e291eaf277724b845a6c596d9669 {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.WXS.Nbc C3N-00651 AML WXS buccal_normal CPT0435060001 CPT0435060001.WholeExome.RP-1303.bam 23777760803 BAM aligned CPTAC3 e0866eae-e86e-43cc-a85e-bfdeaecd506f 0da75ba3fe228a321f7e1f29725dc19a {"aliquot_tag": "ALQ_61dbe3b3", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00651.WXS.Nbc.hg38 C3N-00651 AML WXS buccal_normal CPT0435060001 342bdbdb-2148-431d-ad39-6140d9c335fa_wxs_gdc_realn.bam 32128775184 BAM harmonized CPTAC3 1a23b98c-d20b-4f53-b383-2649a57d6fd6 a544b580a051bd2d5b7d73f8cceab4f3 {"aliquot_tag": "ALQ_61dbe3b3", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00651.WXS.Tbm C3N-00651 AML WXS tumor_bone_marrow CPT0437950001 CPT0437950001.WholeExome.RP-1303.bam 25690540966 BAM aligned CPTAC3 b4f0dc09-b1de-4d77-88fc-aa5021f52f44 829e6fe875bccb82740b75c06efce0ef {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00651.WXS.Tbm.hg38 C3N-00651 AML WXS tumor_bone_marrow CPT0437950001 a34221e5-44cf-4b5e-9ee9-a6772f2846d7_wxs_gdc_realn.bam 35473400704 BAM harmonized CPTAC3 dabeb10c-d42c-4221-846a-63824ffc31ee fe7d0d5f3b1217dec1d8971ea6563944 {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.MethArray.Green.Tbm C3N-00656 AML Methylation_Array tumor_bone_marrow CPT0438050002 205705520145_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c4331380-5326-4ccb-adb5-623596ce0823 f3c47840788f58cf27430fdbe32f2e82 {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.MethArray.Red.Tbm C3N-00656 AML Methylation_Array tumor_bone_marrow CPT0438050002 205705520145_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 7f50ba81-921c-4bd1-852f-080be1eec208 e9c18f96de2e2d6e58c4b1a52487a489 {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.miRNA-Seq.S33_L002_R1.Tbm C3N-00656 AML miRNA-Seq tumor_bone_marrow CPT0438060002 220125_UNC32-K00270_0311_AHMNYYBBXY_GAGTGG_S33_L002_R1_001.unaln.bam 239589098 BAM S33_L002_R1 unaligned CPTAC3 ecc57000-c07b-40ab-a243-1d5ff25138b1 be1245229140832dc24c10509ab75de9 {"aliquot_tag": "ALQ_9905d3c9", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.miRNA-Seq.Tbm.hg38 C3N-00656 AML miRNA-Seq tumor_bone_marrow CPT0438060002 6208a312-cb9c-4c4d-853e-5990f808ea05_mirnaseq_gdc_realn.bam 264555353 BAM harmonized CPTAC3 68c3a49c-fac0-43ec-9e79-2a1ac95d8042 ed6680c0bf8e8614fb6140d8b78d56b5 {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.RNA-Seq.chimeric.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.chimeric.gdc_realn.bam 696275695 BAM chimeric harmonized CPTAC3 3a090740-8c1d-4c79-bbc2-d9189f530a8f 43bf6f60a75fc0448e7e38155bf7840c {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.RNA-Seq.genomic.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.genomic.gdc_realn.bam 7838576260 BAM genomic harmonized CPTAC3 874999a1-5ad0-4460-9587-06eb7a2fad92 831754664955affd12025b11f303b9bd {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.RNA-Seq.S18_L005_R1.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R1_001.fastq.gz 3964756015 FASTQ S18_L005_R1 unaligned CPTAC3 09c7e727-ce2c-490c-b68c-b07559b752a2 9e006fc8cc6c3e6ea479f0253d0832e4 {"aliquot_tag": "ALQ_9905d3c9", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.RNA-Seq.S18_L005_R2.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R2_001.fastq.gz 4234313784 FASTQ S18_L005_R2 unaligned CPTAC3 cc595190-cac9-45b0-8b20-c0155c59e122 7d0f0607ca1446facf22bade03365e29 {"aliquot_tag": "ALQ_9905d3c9", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.RNA-Seq.transcriptome.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.transcriptome.gdc_realn.bam 8607142785 BAM transcriptome harmonized CPTAC3 e6c97390-2f06-46e9-b730-622f018ce951 d38ef8afb163bd43cf1abf464a1b18ae {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.WGS.Nbc C3N-00656 AML WGS buccal_normal CPT0435090001 CPT0435090001.WholeGenome.RP-2158.bam 42815516069 BAM aligned CPTAC3 e45aaa5f-c1d0-43a1-8e91-e3806a3d0fde 961ffd26ea57a8f1e00c5a8dd8a5908e {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00656.WGS.Nbc.hg38 C3N-00656 AML WGS buccal_normal CPT0435090001 908d86b1-40e5-4552-a1d6-f0d745fad499_wgs_gdc_realn.bam 125888783679 BAM harmonized CPTAC3 71add2cb-73d9-4aa3-8025-8fc9a58267b4 e2a7ebe4f25c0aa32ddc6b3d4f1bc678 {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00656.WGS.Tbm C3N-00656 AML WGS tumor_bone_marrow CPT0438050002 CPT0438050002.WholeGenome.RP-2158.bam 48013376646 BAM aligned CPTAC3 58a2341e-21e3-4c98-b2d5-a865cc3f454c 0a6ee4d8b9a2489c9596f21e279e61ff {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.WGS.Tbm.hg38 C3N-00656 AML WGS tumor_bone_marrow CPT0438050002 4af4dacb-1e3d-4e55-b504-e78b2c17136a_wgs_gdc_realn.bam 143462709432 BAM harmonized CPTAC3 c0204f8e-861d-4005-a7af-9a9f9cac802a e206404f58fb8e2afbaa1aee5d0294ef {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.WXS.Nbc C3N-00656 AML WXS buccal_normal CPT0435090001 CPT0435090001.WholeExome.RP-1303.bam 29878259424 BAM aligned CPTAC3 8f2dd230-e460-459b-b1a2-349cf170d2e6 d9bf87ddecd5c459e2cd1c969f3a04cf {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00656.WXS.Nbc.hg38 C3N-00656 AML WXS buccal_normal CPT0435090001 908d86b1-40e5-4552-a1d6-f0d745fad499_wxs_gdc_realn.bam 40618481853 BAM harmonized CPTAC3 1233380f-2cb7-4050-a8e5-758c40fba5f1 5b862fff34a18eec52f9cddb8eac6561 {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00656.WXS.Tbm C3N-00656 AML WXS tumor_bone_marrow CPT0438050002 CPT0438050002.WholeExome.RP-1303.bam 25709697241 BAM aligned CPTAC3 fd4c72d7-ca17-4b75-b7e3-8f72f473bca4 bd9b1362ab3529b910f491484e6614ec {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00656.WXS.Tbm.hg38 C3N-00656 AML WXS tumor_bone_marrow CPT0438050002 4af4dacb-1e3d-4e55-b504-e78b2c17136a_wxs_gdc_realn.bam 89882477241 BAM harmonized CPTAC3 0b33a9ba-d8fa-4b96-8e1c-6f35463ef1eb 5769974e8c594c361268189ee9485178 {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.MethArray.Green.Tbm C3N-00659 AML Methylation_Array tumor_bone_marrow CPT0438150002 205987780153_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b33736fa-9d06-4fe7-b2cd-d0656489d9a8 5f5bd75ffb5b39b691efe5f80fdcbdd0 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.MethArray.Red.Tbm C3N-00659 AML Methylation_Array tumor_bone_marrow CPT0438150002 205987780153_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 a4647cb5-1822-47d9-adeb-ed42f86e0a82 2882cbed54d694ac99c17341bec28311 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.miRNA-Seq.S47_L003_R1.Tbm C3N-00659 AML miRNA-Seq tumor_bone_marrow CPT0438160002 220125_UNC32-K00270_0311_AHMNYYBBXY_GGTAGC_S47_L003_R1_001.unaln.bam 210095529 BAM S47_L003_R1 unaligned CPTAC3 6b68eff0-43d6-4876-9659-750bc632ea27 927f5e6e17ed0e54a7c70a9f6ac1e600 {"aliquot_tag": "ALQ_5259006c", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.miRNA-Seq.Tbm.hg38 C3N-00659 AML miRNA-Seq tumor_bone_marrow CPT0438160002 d35fe2bf-897c-478c-ae53-3dc1dddf433d_mirnaseq_gdc_realn.bam 236181743 BAM harmonized CPTAC3 a6c15b1e-8ede-4f43-bb2d-044e0906e9d8 c738cb546f39fb30ef2aaf56c0029990 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.RNA-Seq.chimeric.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.chimeric.gdc_realn.bam 668640609 BAM chimeric harmonized CPTAC3 ea48ab62-d9c0-437a-ae11-a4aaadb09074 f87de2c7ee10538d1ea19423023e6fb0 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.RNA-Seq.genomic.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.genomic.gdc_realn.bam 7737834452 BAM genomic harmonized CPTAC3 672f2344-8119-40ea-a097-a52904d34e09 22e251422cf1589b4298fd5bda052765 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.RNA-Seq.S19_L005_R1.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R1_001.fastq.gz 3738714987 FASTQ S19_L005_R1 unaligned CPTAC3 0c8e76d2-3765-43ef-8db4-bd090133aa01 a57afd1d328320effba356a5886a2e96 {"aliquot_tag": "ALQ_5259006c", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.RNA-Seq.S19_L005_R2.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R2_001.fastq.gz 4015190558 FASTQ S19_L005_R2 unaligned CPTAC3 bab7c676-7656-49e6-ae18-b8d29ce221be a22ceb1c6b4501d6775449ba9cf804fe {"aliquot_tag": "ALQ_5259006c", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.RNA-Seq.transcriptome.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.transcriptome.gdc_realn.bam 8553665678 BAM transcriptome harmonized CPTAC3 02a654a3-f866-4170-8636-fdfcbfb80b26 6dd56ed32eea154201232f262131f7b0 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.WGS.Nbc C3N-00659 AML WGS buccal_normal CPT0435120001 CPT0435120001.WholeGenome.RP-2158.bam 54372768330 BAM aligned CPTAC3 734560bc-c701-4ce8-9473-d4defecea828 d79e52ec1c637e001c9c6ba151d90a1e {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00659.WGS.Nbc.hg38 C3N-00659 AML WGS buccal_normal CPT0435120001 46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wgs_gdc_realn.bam 160385803505 BAM harmonized CPTAC3 46eb5e4a-885c-49c1-a218-4deb4e9d2f08 9df44a99f4a12634d254b6d95b335853 {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00659.WGS.Tbm C3N-00659 AML WGS tumor_bone_marrow CPT0438150002 CPT0438150002.WholeGenome.RP-2158.bam 48310605300 BAM aligned CPTAC3 9b6326a4-e001-4aee-ad96-4d5215e2a716 540f43b591fa076e78c98b3ed3f3c29c {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.WGS.Tbm.hg38 C3N-00659 AML WGS tumor_bone_marrow CPT0438150002 4045e55e-d312-47ae-a853-1ff6f59e65d3_wgs_gdc_realn.bam 146159152536 BAM harmonized CPTAC3 6fca0608-132e-41e7-8103-0d121e45004d e115d28b36c044292e5b0fdade605559 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.WXS.Nbc C3N-00659 AML WXS buccal_normal CPT0435120001 CPT0435120001.WholeExome.RP-1303.bam 23941692765 BAM aligned CPTAC3 c710bcd1-9b73-4d75-8028-255f8877ec70 1b58b513de1ab32e1243b23db4f5c554 {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00659.WXS.Nbc.hg38 C3N-00659 AML WXS buccal_normal CPT0435120001 46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wxs_gdc_realn.bam 33227332623 BAM harmonized CPTAC3 9e7a838c-8033-4371-942f-572da8bb1aee bbbec484b4252a92aba1d6c4d3f2fb74 {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00659.WXS.Tbm C3N-00659 AML WXS tumor_bone_marrow CPT0438150002 CPT0438150002.WholeExome.RP-1303.bam 25184518788 BAM aligned CPTAC3 3ec22ec4-1c05-4873-987a-d912a6a305ff bc30183b7985570c434365a4a2fd0969 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00659.WXS.Tbm.hg38 C3N-00659 AML WXS tumor_bone_marrow CPT0438150002 4045e55e-d312-47ae-a853-1ff6f59e65d3_wxs_gdc_realn.bam 35040276552 BAM harmonized CPTAC3 f7aaddb3-f740-4b16-8460-d101844bf612 ac52a5992f70d32ba6cb990a4b90e0db {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.MethArray.Green.Tbm C3N-00660 AML Methylation_Array tumor_bone_marrow CPT0383650002 205555390119_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ef3fe73d-28df-4305-9ab8-837a2b4270bb 30717a55c24151966f2f3f82692c0bbe {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.MethArray.Red.Tbm C3N-00660 AML Methylation_Array tumor_bone_marrow CPT0383650002 205555390119_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 ccf6cf73-7065-4baf-a920-67ab8ab3e998 bbb1827571c53642cf151a121a6684f2 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.miRNA-Seq.S22_L005_R1.Tbm C3N-00660 AML miRNA-Seq tumor_bone_marrow CPT0383680002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACTGAT_S22_L005_R1_001.unaln.bam 353218389 BAM S22_L005_R1 unaligned CPTAC3 8ea51b5f-309c-4fb9-8b3b-17a0692d22b3 d9d62344733e7c511e32989d9a444970 {"aliquot_tag": "ALQ_cb60abd0", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.miRNA-Seq.Tbm.hg38 C3N-00660 AML miRNA-Seq tumor_bone_marrow CPT0383680002 95a8c075-9128-4bde-937a-0ce5225fc0ab_mirnaseq_gdc_realn.bam 368236027 BAM harmonized CPTAC3 364f7cda-a2b8-4c1e-8725-8e401a1280c8 aaa4ecbe76cb4a9d93573f70fd95feb4 {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.RNA-Seq.chimeric.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.chimeric.gdc_realn.bam 294689761 BAM chimeric harmonized CPTAC3 727325f3-15cf-45e6-9a97-13387add4f16 3f212dc27acb8934d5fbe912649d4962 {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.RNA-Seq.genomic.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.genomic.gdc_realn.bam 9414231134 BAM genomic harmonized CPTAC3 92abdc6f-d606-44bf-899e-227f6566181d 878258a74467bb04ee21bef32fa48803 {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.RNA-Seq.S12_L003_R1.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R1_001.fastq.gz 4431111003 FASTQ S12_L003_R1 unaligned CPTAC3 33eae1fa-1a21-4b09-a234-53c313f73113 029666ab4297b12c57d4f442b5ab9c13 {"aliquot_tag": "ALQ_cb60abd0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.RNA-Seq.S12_L003_R2.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R2_001.fastq.gz 4567963160 FASTQ S12_L003_R2 unaligned CPTAC3 029b0833-f4d5-4b3f-a5ae-1ffcf2da4470 d4fc84aad7f22b1a9b6e5356bf4c7e2d {"aliquot_tag": "ALQ_cb60abd0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.RNA-Seq.transcriptome.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.transcriptome.gdc_realn.bam 7955946068 BAM transcriptome harmonized CPTAC3 1c1fcca0-c6c1-465a-b5c5-f23e02630cc1 f1172e336ca34db5db76e5e442caeaaa {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.WGS.Nbc C3N-00660 AML WGS buccal_normal CPT0383750002 CPT0383750002.WholeGenome.RP-2158.bam 51684594192 BAM aligned CPTAC3 68f94f0f-fb2b-4a00-aa34-67cb5f3f72b7 2cb6548a9550f843084553091c334630 {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00660.WGS.Nbc.hg38 C3N-00660 AML WGS buccal_normal CPT0383750002 606201ec-ba28-49e9-b880-7d209c3e763c_wgs_gdc_realn.bam 152580396100 BAM harmonized CPTAC3 6d340b8f-1f8e-4c6a-91b1-dd502378d273 6fe5e2fceab054c6ceb96bc84252b4c7 {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00660.WGS.Tbm C3N-00660 AML WGS tumor_bone_marrow CPT0383650002 CPT0383650002.WholeGenome.RP-2158.bam 64103320954 BAM aligned CPTAC3 160cac9f-ab43-42fb-8465-44b103863f56 d9867303cf905579d6b1c1df678c983d {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.WGS.Tbm.hg38 C3N-00660 AML WGS tumor_bone_marrow CPT0383650002 7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wgs_gdc_realn.bam 187541869233 BAM harmonized CPTAC3 f6819867-14ed-436d-aaa6-e87e5ffce392 70ebb20475be09476a5cbe960cd39258 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.WXS.Nbc C3N-00660 AML WXS buccal_normal CPT0383750002 CPT0383750002.WholeExome.RP-1303.bam 36751804313 BAM aligned CPTAC3 7f104952-51f3-4e51-a21b-4a494002d207 12d51f997a4efb9d6702e075a2f3c98d {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00660.WXS.Nbc.hg38 C3N-00660 AML WXS buccal_normal CPT0383750002 606201ec-ba28-49e9-b880-7d209c3e763c_wxs_gdc_realn.bam 50418874518 BAM harmonized CPTAC3 becfee83-3d85-4f28-9613-a0c26a6613d3 16d655d3f838acc349cdc0b9573c81ae {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00660.WXS.Tbm C3N-00660 AML WXS tumor_bone_marrow CPT0383650002 CPT0383650002.WholeExome.RP-1303.bam 23808560787 BAM aligned CPTAC3 954c782f-bb10-40be-a7ac-94f7f32f6852 304cd763f6787c8f85b8308ed941f9f3 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00660.WXS.Tbm.hg38 C3N-00660 AML WXS tumor_bone_marrow CPT0383650002 7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wxs_gdc_realn.bam 32898969714 BAM harmonized CPTAC3 e4b3a652-df94-426e-923f-ef298f0f164e a409d52e47a7217adc491d10817c1b57 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00661.MethArray.Green.T C3N-00661 GBM Methylation_Array tumor CPT0087570009 202234380062_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f13b13cf-7bf6-42ad-97d1-7d4aa3f83c92 9d4082869ddcf5e27c5cacb24c080a61 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor"} -C3N-00661.MethArray.Red.T C3N-00661 GBM Methylation_Array tumor CPT0087570009 202234380062_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 b78c7cc4-0500-44d1-9a19-09aaea5725a6 c357192e1e9df59809abd14c6a2e59fd {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor"} -C3N-00661.miRNA-Seq.S41_L008_R1.T C3N-00661 GBM miRNA-Seq tumor CPT0087570006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTGAAA_S41_L008_R1_001.unaln.bam 281999100 BAM S41_L008_R1 unaligned CPTAC3 f3ca8343-4740-4ff5-99fc-5c65a6f75f9f a0107a940ea6a21006bcb3335c2dfabc {"aliquot_tag": "ALQ_50b9260", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00661.miRNA-Seq.T.hg38 C3N-00661 GBM miRNA-Seq tumor CPT0087570006 7c121fc0-34ef-46f7-a7e9-88171c245852_mirnaseq_gdc_realn.bam 309676635 BAM harmonized CPTAC3 9d8b70a1-8bc1-4f71-ab05-7993726b40e3 837b3a099b273b7ff4cfb4d6048917ee {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor"} -C3N-00661.RNA-Seq.chimeric.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.chimeric.gdc_realn.bam 43149780 BAM chimeric harmonized CPTAC3 c64d4d5f-7478-4d77-bcd7-28b778e97b06 e407a2391523ef2874812a2684d75518 {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor"} -C3N-00661.RNA-Seq.genomic.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.genomic.gdc_realn.bam 8450211280 BAM genomic harmonized CPTAC3 23aa68ed-4c4c-458a-b2eb-e4428e012fd2 6ecd0c5933bc4743c18a0f076d043399 {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor"} -C3N-00661.RNA-Seq.S1_L001_R1.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4280820344 FASTQ S1_L001_R1 unaligned CPTAC3 0f21d54f-4e17-4dd1-8e30-aa61b33dfa23 4ea2a23896e903382a3535d636aa51eb {"aliquot_tag": "ALQ_50b9260", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00661.RNA-Seq.S1_L001_R2.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4715271403 FASTQ S1_L001_R2 unaligned CPTAC3 cb42cdf1-e194-4a1b-8bc8-64238ecc880b 9d1fecaea92ad9fdee5b945b6e05c302 {"aliquot_tag": "ALQ_50b9260", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00661.RNA-Seq.transcriptome.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.transcriptome.gdc_realn.bam 10370390473 BAM transcriptome harmonized CPTAC3 2efe305e-8d80-4319-b9bc-c770124626c5 86714628fc93c15c51073e0759450602 {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor"} -C3N-00661.WGS.N C3N-00661 GBM WGS blood_normal CPT0087650002 CPT0087650002.WholeGenome.RP-1303.bam 61808855431 BAM aligned CPTAC3 29a5aa8b-57bf-45d6-ba8a-f780e31af35d 3c94ce6c99dc21fb3ad75ea548fb5708 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00661.WGS.N.hg38 C3N-00661 GBM WGS blood_normal CPT0087650002 e997aa99-cb00-4512-ba9d-89c014720977_wgs_gdc_realn.bam 91546572846 BAM harmonized CPTAC3 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f 8e88cf3cda0860ff833819c6bc4f09a1 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00661.WGS.T C3N-00661 GBM WGS tumor CPT0087570009 CPT0087570009.WholeGenome.RP-1303.bam 66764756872 BAM aligned CPTAC3 dee44719-4644-4e07-abe3-c2c4a2328696 96f2457bedb8a5de6bf867978e64f9d1 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor"} -C3N-00661.WGS.T.hg38 C3N-00661 GBM WGS tumor CPT0087570009 3bce098d-2249-4ea7-8832-b1a436035810_wgs_gdc_realn.bam 98029268406 BAM harmonized CPTAC3 2fed7e32-d8c9-46cf-8ace-368ede492a80 3645fa73b5d41f4f0ab47b73998b4b53 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor"} -C3N-00661.WXS.N C3N-00661 GBM WXS blood_normal CPT0087650002 CPT0087650002.WholeExome.RP-1303.bam 40035642416 BAM aligned CPTAC3 c1d9d4bb-d5e6-40d9-bd29-315747bfa0a3 f6398f5ee25f7b7e5392b78169f81e15 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00661.WXS.N.hg38 C3N-00661 GBM WXS blood_normal CPT0087650002 e997aa99-cb00-4512-ba9d-89c014720977_wxs_gdc_realn.bam 55210045551 BAM harmonized CPTAC3 7a8cfc68-f8a4-4c6e-9acc-5f9f385f068b 769946461299ee2f517d3bc5cf6b5a67 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00661.WXS.T C3N-00661 GBM WXS tumor CPT0087570009 CPT0087570009.WholeExome.RP-1303.bam 33966809743 BAM aligned CPTAC3 2bf53bfc-b3a0-4a39-ac8f-97f38f3ef39e 7324ab41297bc97a6a88b616ccbc5656 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor"} -C3N-00661.WXS.T.hg38 C3N-00661 GBM WXS tumor CPT0087570009 3bce098d-2249-4ea7-8832-b1a436035810_wxs_gdc_realn.bam 46075322257 BAM harmonized CPTAC3 d480b264-6b7b-4924-9d02-ee385b0b7c39 fc10333e3414c836ffc106cee3d477c2 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor"} -C3N-00662.MethArray.Green.T C3N-00662 GBM Methylation_Array tumor CPT0087680009 202234370086_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8d0ee2e0-05d5-44b0-bd72-7207de10b9e7 e6f2d103965c31fb689d5d62244d65e7 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor"} -C3N-00662.MethArray.Red.T C3N-00662 GBM Methylation_Array tumor CPT0087680009 202234370086_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 dc44ddb8-e508-4720-8d67-c4155833f906 642a9ca317150150b922c4f11ea58c69 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor"} -C3N-00662.miRNA-Seq.S42_L008_R1.T C3N-00662 GBM miRNA-Seq tumor CPT0087680006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTGGCC_S42_L008_R1_001.unaln.bam 253670716 BAM S42_L008_R1 unaligned CPTAC3 397a556b-3625-4de4-b375-864bfb1be85d 032e39be3be271229667c2304dbc7fc3 {"aliquot_tag": "ALQ_1cf771f", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00662.miRNA-Seq.T.hg38 C3N-00662 GBM miRNA-Seq tumor CPT0087680006 3fe0d587-e4a1-4505-9dac-8fd9ae352890_mirnaseq_gdc_realn.bam 278459674 BAM harmonized CPTAC3 9578dc48-9289-462b-9b3c-f575cd9dd29a 545ecf0e3dfe4b27c8f9d0a861401256 {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor"} -C3N-00662.RNA-Seq.chimeric.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.chimeric.gdc_realn.bam 38667659 BAM chimeric harmonized CPTAC3 25589ecb-2f6b-4f89-8ae7-0a09d85d33d3 6cdd7243895258850cbb788932a47e24 {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor"} -C3N-00662.RNA-Seq.genomic.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.genomic.gdc_realn.bam 8277945856 BAM genomic harmonized CPTAC3 5b2c602c-6906-4f7e-9ef7-7035569ca4f0 6b3a040f95e0d9efbd222d4f3483a6e3 {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor"} -C3N-00662.RNA-Seq.S4_L001_R1.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3857129343 FASTQ S4_L001_R1 unaligned CPTAC3 fe0a5bd8-4326-43e3-83ec-db254421bb70 72a0582504c4b4a7203f71cac406767d {"aliquot_tag": "ALQ_1cf771f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00662.RNA-Seq.S4_L001_R2.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4284638564 FASTQ S4_L001_R2 unaligned CPTAC3 661d6dae-cc63-4161-81eb-b7347bf223d0 525d9717d49c0ecd8be50a9d1c57b9bd {"aliquot_tag": "ALQ_1cf771f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00662.RNA-Seq.transcriptome.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.transcriptome.gdc_realn.bam 8621409650 BAM transcriptome harmonized CPTAC3 4a6211f9-2ec9-4949-bcd1-812a98b6c101 15b149444f87b5c70759156358312fdf {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor"} -C3N-00662.scRNA-Seq.S1_L004_R1.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R1_001.fastq.gz 14835795110 FASTQ S1_L004_R1 unaligned CPTAC3 8d389c12-7022-49ad-96a0-d8e8f7d4f007 842d7192228a7b47e48a9f164990f1d3 {"aliquot_tag": "ALQ_f6da2772", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00662.scRNA-Seq.S1_L004_R2.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R2_001.fastq.gz 33781848129 FASTQ S1_L004_R2 unaligned CPTAC3 eec795f2-2324-4530-b7eb-eb67e5184af7 d270ef2770cea5dab7f5a401234edbbb {"aliquot_tag": "ALQ_f6da2772", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00662.scRNA-Seq.T.hg38 C3N-00662 GBM scRNA-Seq tumor CPT0087680014 possorted_genome_bam.bam 33941762690 BAM harmonized CPTAC3 a12a483a-71a6-490c-b175-3373997ab5d5 d705a4fddaf3904e90b7aaee6704a1ef {"aliquot_tag": "ALQ_f6da2772", "gdc_sample_type": "Primary Tumor"} -C3N-00662.WGS.N C3N-00662 GBM WGS blood_normal CPT0087720002 CPT0087720002.WholeGenome.RP-1303.bam 58036535017 BAM aligned CPTAC3 83b1d3cf-b33a-4011-88e5-41f602fc0922 b3aaa706402126ee8ec0fd5f3ead7c14 {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal"} -C3N-00662.WGS.N.hg38 C3N-00662 GBM WGS blood_normal CPT0087720002 8c165614-a7de-4661-b701-726d28c8ac3a_wgs_gdc_realn.bam 84160516593 BAM harmonized CPTAC3 dd1e269b-54b0-4731-a58e-dd1c5f87c097 3e2b6cf7e7ce60afd3977188a18adce2 {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal"} -C3N-00662.WGS.T C3N-00662 GBM WGS tumor CPT0087680009 CPT0087680009.WholeGenome.RP-1303.bam 68144530031 BAM aligned CPTAC3 199a7bf3-052f-40d6-992e-80bebd989097 6d8cbec5d74081859a0f666d1732ac77 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor"} -C3N-00662.WGS.T.hg38 C3N-00662 GBM WGS tumor CPT0087680009 8ef2e973-1a92-476d-b73a-10a37332e9d7_wgs_gdc_realn.bam 100057036877 BAM harmonized CPTAC3 071aca22-1581-46de-b6d5-7b64afeb0d85 e8a656fb1ac03d7f7da30e63606b7c2d {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor"} -C3N-00662.WXS.N C3N-00662 GBM WXS blood_normal CPT0087720002 CPT0087720002.WholeExome.RP-1303.bam 26184955817 BAM aligned CPTAC3 fa384ceb-b4f7-4186-8356-b20a2c65629c 059cc2417addb60f2e5e974ebc0ee73b {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal"} -C3N-00662.WXS.N.hg38 C3N-00662 GBM WXS blood_normal CPT0087720002 8c165614-a7de-4661-b701-726d28c8ac3a_wxs_gdc_realn.bam 35886053042 BAM harmonized CPTAC3 e0c40321-c1a9-4308-a056-2950db2d4923 04ce9b41c7f0b371b6ec659cf929c248 {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal"} -C3N-00662.WXS.T C3N-00662 GBM WXS tumor CPT0087680009 CPT0087680009.WholeExome.RP-1303.bam 33349723248 BAM aligned CPTAC3 da42d8ec-b586-4aa9-ad85-8bd7a6e88627 02e1c05e418c790d6a348d0e88fc277b {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor"} -C3N-00662.WXS.T.hg38 C3N-00662 GBM WXS tumor CPT0087680009 8ef2e973-1a92-476d-b73a-10a37332e9d7_wxs_gdc_realn.bam 45016762866 BAM harmonized CPTAC3 f1765cfa-f5ee-4887-a538-9604dd4d7a9b 367acc6e711b333bca9aba120d733a67 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor"} -C3N-00663.MethArray.Green.T C3N-00663 GBM Methylation_Array tumor CPT0087730009 202234380061_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 56b09a64-c242-422d-8f37-f3ba240ad38f 57a3300e71c37ce680cbb3190d9273cd {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor"} -C3N-00663.MethArray.Red.T C3N-00663 GBM Methylation_Array tumor CPT0087730009 202234380061_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 5087c974-a7f4-44c9-be1e-da7cceef3762 07b891c665e1444481a70c879c93e93b {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor"} -C3N-00663.miRNA-Seq.S43_L008_R1.T C3N-00663 GBM miRNA-Seq tumor CPT0087730006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTTTCG_S43_L008_R1_001.unaln.bam 233876272 BAM S43_L008_R1 unaligned CPTAC3 acbeeb0e-f510-4776-a7b5-115dff07e63a 795dec93e877621b03d4e93db299dc0f {"aliquot_tag": "ALQ_bd4395ab", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00663.miRNA-Seq.T.hg38 C3N-00663 GBM miRNA-Seq tumor CPT0087730006 5d973dc8-faae-4610-ae1b-007a481589ff_mirnaseq_gdc_realn.bam 260543384 BAM harmonized CPTAC3 24690bde-f455-47ba-abb5-efd664230d0e 659e9f2e9fe9b6c6bd079b9f9551ea0b {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor"} -C3N-00663.RNA-Seq.chimeric.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.chimeric.gdc_realn.bam 54122757 BAM chimeric harmonized CPTAC3 d47414fd-5760-4d10-8460-632b3a27d012 c79266a0c465e7fefe6c21c17cf69696 {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor"} -C3N-00663.RNA-Seq.genomic.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.genomic.gdc_realn.bam 9726747201 BAM genomic harmonized CPTAC3 1429f293-08ee-4638-a88e-1c349421bed0 1bb01b39ff659f67f36d93d3370ae602 {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor"} -C3N-00663.RNA-Seq.S20_L008_R1.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R1_001.fastq.gz 4133457611 FASTQ S20_L008_R1 unaligned CPTAC3 a81c70bb-e641-4704-9927-70d093da191b 9bebd453218c504d9f4a5e9a1dfe829f {"aliquot_tag": "ALQ_bd4395ab", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00663.RNA-Seq.S20_L008_R2.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R2_001.fastq.gz 4624075046 FASTQ S20_L008_R2 unaligned CPTAC3 88fd4df9-3f7e-43df-8e34-e5a2f62d60a9 143d9d41d8006388ec21818503b74a0f {"aliquot_tag": "ALQ_bd4395ab", "sample": "S20", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00663.RNA-Seq.transcriptome.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.transcriptome.gdc_realn.bam 8555784894 BAM transcriptome harmonized CPTAC3 bad45859-f935-47bf-b41e-4a359b3dd730 59425f3844aa888eff9341b8b4273d20 {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor"} -C3N-00663.WGS.N C3N-00663 GBM WGS blood_normal CPT0087810002 CPT0087810002.WholeGenome.RP-1303.bam 78686804838 BAM aligned CPTAC3 1f2be79d-4860-47bb-b2b9-4f8259146a54 32897919dae92c4a4806d3c7ed167795 {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal"} -C3N-00663.WGS.N.hg38 C3N-00663 GBM WGS blood_normal CPT0087810002 a1aa3a23-f590-48d2-b559-2340afcb3e6c_wgs_gdc_realn.bam 115995719987 BAM harmonized CPTAC3 d6582bf3-3f98-46b1-a149-7997f5009bda 7c921fce47246bcdb890c068ed5ed247 {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal"} -C3N-00663.WGS.T C3N-00663 GBM WGS tumor CPT0087730009 CPT0087730009.WholeGenome.RP-1303.bam 61829567029 BAM aligned CPTAC3 a87c0259-852a-488c-981a-1f3b5f1b0845 4f6d58303a959cc4381c973558e38c06 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor"} -C3N-00663.WGS.T.hg38 C3N-00663 GBM WGS tumor CPT0087730009 cd98c349-930d-4cd6-a2db-5bb1a7f4951b_wgs_gdc_realn.bam 91452960453 BAM harmonized CPTAC3 65c5d898-e316-4071-87cd-f1341762fd48 da46fce17adee72cff5b19f4507e8390 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor"} -C3N-00663.WXS.N C3N-00663 GBM WXS blood_normal CPT0087810002 CPT0087810002.WholeExome.RP-1303.bam 43233180120 BAM aligned CPTAC3 a24a0411-72bf-42bb-a1d1-5c9eb58beee9 06cbf96a926c27bdb42c19e6b3e65025 {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal"} -C3N-00663.WXS.N.hg38 C3N-00663 GBM WXS blood_normal CPT0087810002 a1aa3a23-f590-48d2-b559-2340afcb3e6c_wxs_gdc_realn.bam 57449122610 BAM harmonized CPTAC3 aeec4ab0-c3bf-4a88-af43-61cac87354c9 69b6c41251957eff1185e4bf14d1a12c {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal"} -C3N-00663.WXS.T C3N-00663 GBM WXS tumor CPT0087730009 CPT0087730009.WholeExome.RP-1303.bam 32454101537 BAM aligned CPTAC3 920252da-957b-4e94-b282-a63fc773ef5b 771a576e67687d20a3cf01ee42f28db6 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor"} -C3N-00663.WXS.T.hg38 C3N-00663 GBM WXS tumor CPT0087730009 cd98c349-930d-4cd6-a2db-5bb1a7f4951b_wxs_gdc_realn.bam 44878213962 BAM harmonized CPTAC3 a358088e-5d69-40d2-add9-87260dd0680a d0b3242451c09e8525a6cc7e052afcf8 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor"} -C3N-00665.MethArray.Green.T C3N-00665 GBM Methylation_Array tumor CPT0093360009 202234380099_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 855982e3-5856-4a29-bc70-28f8dbbc7bb3 cd343a7040b511eae16fde9c76c35444 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor"} -C3N-00665.MethArray.Red.T C3N-00665 GBM Methylation_Array tumor CPT0093360009 202234380099_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 770d53c5-7f67-4778-9a2f-65676dde5ba1 e7bc00e999eef6a37bd680af4cc68513 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor"} -C3N-00665.miRNA-Seq.S26_L005_R1.T C3N-00665 GBM miRNA-Seq tumor CPT0093360006 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L005_R1_001.unaln.bam 171628201 BAM S26_L005_R1 unaligned CPTAC3 acbfaea1-6f7f-4670-96af-17a40af2355c 0536858b8545e97e419685f68742c349 {"aliquot_tag": "ALQ_d6d77c40", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00665.miRNA-Seq.T.hg38 C3N-00665 GBM miRNA-Seq tumor CPT0093360006 5feaef2c-c9b3-4e37-bc6c-57cb31f3c6a8_mirnaseq_gdc_realn.bam 196385122 BAM harmonized CPTAC3 436fc58e-1bbe-4f2e-a185-029cb69dca61 83a11d3faeafb31700486cfdd0877e14 {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor"} -C3N-00665.RNA-Seq.chimeric.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.chimeric.gdc_realn.bam 34969459 BAM chimeric harmonized CPTAC3 53ade679-26ca-41fb-8feb-fa92396cd370 62c42137888402cc752b7f768457348c {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor"} -C3N-00665.RNA-Seq.genomic.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.genomic.gdc_realn.bam 10595931691 BAM genomic harmonized CPTAC3 7de2535a-4141-4268-9545-0a93d5ce22e2 02436627fe884f8b272d57d9df2d9967 {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor"} -C3N-00665.RNA-Seq.S13_L004_R1.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R1_001.fastq.gz 4574550613 FASTQ S13_L004_R1 unaligned CPTAC3 949887f9-0e80-4e58-a463-e2f4eca6f344 accdf37184c922e952d51ba00ce528fc {"aliquot_tag": "ALQ_d6d77c40", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00665.RNA-Seq.S13_L004_R2.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R2_001.fastq.gz 4836725837 FASTQ S13_L004_R2 unaligned CPTAC3 3cdd04b9-24fd-4cd0-adda-92fff85b4f2e 3b8118bc60d1db3d06d148c3dd7ec5e6 {"aliquot_tag": "ALQ_d6d77c40", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00665.RNA-Seq.transcriptome.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.transcriptome.gdc_realn.bam 12088535916 BAM transcriptome harmonized CPTAC3 7ae2eff9-dd97-4efe-8da2-35a95803e935 a741c0596f99243c6008e33ad53d159c {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor"} -C3N-00665.WGS.N C3N-00665 GBM WGS blood_normal CPT0093440002 CPT0093440002.WholeGenome.RP-1303.bam 67576983440 BAM aligned CPTAC3 3f8c7efb-9174-46e4-b8b9-0586934226bb ecef8f9aeeb27be537bbaa939999c00a {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00665.WGS.N.hg38 C3N-00665 GBM WGS blood_normal CPT0093440002 847e2c7e-5327-4064-a364-9e8c65bfd949_wgs_gdc_realn.bam 99580079735 BAM harmonized CPTAC3 394b7faf-cc03-4e59-a36c-01fbfba7449c fded398664740033653f225da54adc13 {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00665.WGS.T C3N-00665 GBM WGS tumor CPT0093360009 CPT0093360009.WholeGenome.RP-1303.bam 67337583453 BAM aligned CPTAC3 69ceb9c4-4258-4cd9-951e-a96bc888884d e708d8e8ce170af32afc8cdc5d30f79b {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor"} -C3N-00665.WGS.T.hg38 C3N-00665 GBM WGS tumor CPT0093360009 f2365384-0941-41c2-8356-e5cb86183369_wgs_gdc_realn.bam 97209041208 BAM harmonized CPTAC3 aabf00cc-4646-4c76-ba85-e71a9918937b c72215857ca220d9ee6b29c11c3dc351 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor"} -C3N-00665.WXS.N C3N-00665 GBM WXS blood_normal CPT0093440002 CPT0093440002.WholeExome.RP-1303.bam 32202336964 BAM aligned CPTAC3 b3233ebf-f9d2-419a-a562-63500f31290f 3d109a901f662ca069fd7fee9400039c {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00665.WXS.N.hg38 C3N-00665 GBM WXS blood_normal CPT0093440002 847e2c7e-5327-4064-a364-9e8c65bfd949_wxs_gdc_realn.bam 44750312807 BAM harmonized CPTAC3 d7c0f0a4-302e-4d90-be01-3bd6592dd132 6083d7e9651b192c6a466fdfe2f936d5 {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal"} -C3N-00665.WXS.T C3N-00665 GBM WXS tumor CPT0093360009 CPT0093360009.WholeExome.RP-1303.bam 57914023552 BAM aligned CPTAC3 8b4a3812-3b88-48ba-b208-c16036cdc7e4 ef92b92543ef5cf5f011e96410ea97a0 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor"} -C3N-00665.WXS.T.hg38 C3N-00665 GBM WXS tumor CPT0093360009 f2365384-0941-41c2-8356-e5cb86183369_wxs_gdc_realn.bam 79664464021 BAM harmonized CPTAC3 6cf5e1b4-e354-4404-b3e5-663bda86bbfb 080c8ff60098c93e44d89bc01d529c9f {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor"} -C3N-00681.MethArray.Green.Tbm C3N-00681 AML Methylation_Array tumor_bone_marrow CPT0383790001 205555380130_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 116cb0d6-b2ce-4e1f-8e56-954cc004ac53 90c72d69e8c7ae5f2016779815c5ac5d {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.MethArray.Red.Tbm C3N-00681 AML Methylation_Array tumor_bone_marrow CPT0383790001 205555380130_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 737bed73-8d50-45f2-8308-bbf5017f80ef b35e0860d139c83227731986204d150f {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.miRNA-Seq.S23_L005_R1.Tbm C3N-00681 AML miRNA-Seq tumor_bone_marrow CPT0383810002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATGAGC_S23_L005_R1_001.unaln.bam 230052033 BAM S23_L005_R1 unaligned CPTAC3 969e1d94-fb36-4df2-a6a9-55a8a7775518 079a94598ebf4d36986138779a57d8bd {"aliquot_tag": "ALQ_fc7aa8d1", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.miRNA-Seq.Tbm.hg38 C3N-00681 AML miRNA-Seq tumor_bone_marrow CPT0383810002 f7ccaf7a-4231-4a14-b1bb-d8eccaf220b9_mirnaseq_gdc_realn.bam 239831324 BAM harmonized CPTAC3 8ffbb8bb-b495-4ad2-a3eb-0e994a31e940 7c04217931da2e794a8d1924959d7be3 {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.RNA-Seq.chimeric.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.chimeric.gdc_realn.bam 263954949 BAM chimeric harmonized CPTAC3 0afb14bf-9dbd-411f-ba86-97ae19e84700 c6a4234504000f1857c26e681c79c5cb {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.RNA-Seq.genomic.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.genomic.gdc_realn.bam 7909952623 BAM genomic harmonized CPTAC3 55743065-aaf8-445c-9756-99d9edb0569c fe06eaa9635ec77e2f7cfe6aa4d037ee {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.RNA-Seq.S8_L002_R1.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R1_001.fastq.gz 3898985323 FASTQ S8_L002_R1 unaligned CPTAC3 182da2bf-ecc4-4df0-b857-d68da45b9a93 a3ba3b543d03119e329da6393163fc5f {"aliquot_tag": "ALQ_fc7aa8d1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.RNA-Seq.S8_L002_R2.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R2_001.fastq.gz 4170046982 FASTQ S8_L002_R2 unaligned CPTAC3 670183c6-3c04-4e18-b129-3d104c270b33 916616b6eaf934a288e352c451896fc8 {"aliquot_tag": "ALQ_fc7aa8d1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.RNA-Seq.transcriptome.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.transcriptome.gdc_realn.bam 9985828702 BAM transcriptome harmonized CPTAC3 31c870b1-d1b4-4eaa-8a4a-6c4b48ddb203 90ea678e248935c3a7f6672192dffd09 {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.WGS.Nbc C3N-00681 AML WGS buccal_normal CPT0383890001 CPT0383890001.WholeGenome.RP-2158.bam 52604640458 BAM aligned CPTAC3 b438557f-92dd-4ce1-a64b-47f33473e220 7bcbe2cbe3f4f288c20518cfd150d874 {"aliquot_tag": "ALQ_5503b2aa", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00681.WGS.Nbc.hg38 C3N-00681 AML WGS buccal_normal CPT0383890001 68519ab6-2a6e-4cb7-a3de-f648c394dc8d_wgs_gdc_realn.bam 151881801324 BAM harmonized CPTAC3 fe2d050d-a92a-42e6-925c-669ac5a858c2 520890609a11bf3fc0d4616aae48dbf5 {"aliquot_tag": "ALQ_5503b2aa", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00681.WGS.Tbm C3N-00681 AML WGS tumor_bone_marrow CPT0383790001 CPT0383790001.WholeGenome.RP-2158.bam 45531231345 BAM aligned CPTAC3 91a7e208-2372-4a5a-84f1-e6b99a6e9da1 d5c884268773ae91af1909a0e80135f0 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.WGS.Tbm.hg38 C3N-00681 AML WGS tumor_bone_marrow CPT0383790001 fadba10a-fe2a-41d8-bab8-4b7ba0e0f6bb_wgs_gdc_realn.bam 126787393204 BAM harmonized CPTAC3 364841e8-4076-4d6b-be96-5a384877d20e a9a8826e38a4ee46ea089aebafefd414 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.WXS.Tbm C3N-00681 AML WXS tumor_bone_marrow CPT0383790001 CPT0383790001.WholeExome.RP-1303.bam 24526942160 BAM aligned CPTAC3 80404b8c-46c8-409a-9f6c-340672d5cf8b a8ac652a6a1a931ef03a51c486a60033 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00681.WXS.Tbm.hg38 C3N-00681 AML WXS tumor_bone_marrow CPT0383790001 fadba10a-fe2a-41d8-bab8-4b7ba0e0f6bb_wxs_gdc_realn.bam 33867668273 BAM harmonized CPTAC3 8884afb3-86fa-4627-84f6-8ed7a62fdf5a c3734e5341471f85ecd4c282830df282 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.MethArray.Green.Tbm C3N-00682 AML Methylation_Array tumor_bone_marrow CPT0383920001 205555390164_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2ecf1006-16b6-4641-b03b-62a471be4d7d ad2ecedc43e8b15bd7c6f6f24f3d6a0e {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.MethArray.Red.Tbm C3N-00682 AML Methylation_Array tumor_bone_marrow CPT0383920001 205555390164_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 31f361a4-a019-43a6-b791-72db9f5e6a96 da6f33abc0add124772f2e13eecc5355 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.miRNA-Seq.S1_L001_R1.Tbm C3N-00682 AML miRNA-Seq tumor_bone_marrow CPT0383930002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACAGTG_S1_L001_R1_001.unaln.bam 219604258 BAM S1_L001_R1 unaligned CPTAC3 a79ad700-b3b5-4787-a458-3ce0d63f49af a18ed19531635caa786a8159c848abb3 {"aliquot_tag": "ALQ_4de62814", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.miRNA-Seq.Tbm.hg38 C3N-00682 AML miRNA-Seq tumor_bone_marrow CPT0383930002 137c87c4-85c3-4779-ae1c-817d9d47eedb_mirnaseq_gdc_realn.bam 239904287 BAM harmonized CPTAC3 39895c6e-b8aa-444f-9f9a-243af04f2c94 dc2795a31000e242154f6c6c1b88e617 {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.RNA-Seq.chimeric.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.chimeric.gdc_realn.bam 51892053 BAM chimeric harmonized CPTAC3 a558b8cb-94b9-40a2-a818-229a49158090 acfb28091b213531f5c6f0e66c22ba8f {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.RNA-Seq.genomic.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.genomic.gdc_realn.bam 7678401356 BAM genomic harmonized CPTAC3 40986da5-0fd4-4bad-9204-b4639aa2db4d c962c2b7587ea666970f5738e6f1b5b3 {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.RNA-Seq.S26_L007_R1.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R1_001.fastq.gz 3637742988 FASTQ S26_L007_R1 unaligned CPTAC3 1e35d895-00c6-4c67-8a9a-5b05c85265d4 5d8e3181a6b9010deb98d7c5ff325f1b {"aliquot_tag": "ALQ_4de62814", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.RNA-Seq.S26_L007_R2.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R2_001.fastq.gz 3818796095 FASTQ S26_L007_R2 unaligned CPTAC3 92ed38f9-f775-446c-805f-b4ebcd834900 0dd02f218c7655c3ae880d0889c2564f {"aliquot_tag": "ALQ_4de62814", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.RNA-Seq.transcriptome.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.transcriptome.gdc_realn.bam 7570517637 BAM transcriptome harmonized CPTAC3 931fb10a-73ac-453c-9716-1e5c64992239 6da5cfe99c8cfef49bf3b1a595c44e1f {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.WGS.Nbc C3N-00682 AML WGS buccal_normal CPT0384020001 CPT0384020001.WholeGenome.RP-2158.bam 56666429156 BAM aligned CPTAC3 29957d5c-082a-4b56-9738-a2dfcaa04728 519c92992fefd297dea742eb895a0c7e {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00682.WGS.Nbc.hg38 C3N-00682 AML WGS buccal_normal CPT0384020001 390d7f76-3d6f-46d1-8a88-402cb7923b53_wgs_gdc_realn.bam 165008409037 BAM harmonized CPTAC3 5c144d70-5a22-494a-95d5-184d07361a2d 77e7bb1e8a435c3b75de19b324665012 {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00682.WGS.Tbm C3N-00682 AML WGS tumor_bone_marrow CPT0383920001 CPT0383920001.WholeGenome.RP-2158.bam 55644554662 BAM aligned CPTAC3 8f109b2f-2044-417a-a2dc-f0cb8d6dbe97 be083b8e84c01a532010a102e3a766c4 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.WGS.Tbm.hg38 C3N-00682 AML WGS tumor_bone_marrow CPT0383920001 cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wgs_gdc_realn.bam 156069378155 BAM harmonized CPTAC3 a9f6a226-2277-4b18-8c66-49821f0b9fc6 3ef527172af746a08ceb4f84fe5170a2 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.WXS.Nbc C3N-00682 AML WXS buccal_normal CPT0384020001 CPT0384020001.WholeExome.RP-1303.bam 24995833086 BAM aligned CPTAC3 81bed2b3-3305-4d5d-9ed0-c45be1bed834 c5d4e1d0dd6334e3a3962b53efb9d3c3 {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00682.WXS.Nbc.hg38 C3N-00682 AML WXS buccal_normal CPT0384020001 390d7f76-3d6f-46d1-8a88-402cb7923b53_wxs_gdc_realn.bam 35173294973 BAM harmonized CPTAC3 ae1a9ec4-e7db-4467-bea4-d30d74abe706 0cd9d5ff9ac186017e05c99e15b3374f {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00682.WXS.Tbm C3N-00682 AML WXS tumor_bone_marrow CPT0383920001 CPT0383920001.WholeExome.RP-1303.bam 20157860147 BAM aligned CPTAC3 e130f1a4-bc02-4c9a-a601-734594b297e8 b26c3f497199d5ad17666571edebc1f6 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00682.WXS.Tbm.hg38 C3N-00682 AML WXS tumor_bone_marrow CPT0383920001 cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wxs_gdc_realn.bam 28246981343 BAM harmonized CPTAC3 35900896-b8ed-41d0-a4b8-7c4c08293966 75039f766dbed274b7f31c7690d8b727 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.MethArray.Green.Tbm C3N-00689 AML Methylation_Array tumor_bone_marrow CPT0438250002 205987780094_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 05a22419-8932-431b-954c-8c689dc3a834 095767f6bddad145bc37996e65d9d65e {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.MethArray.Red.Tbm C3N-00689 AML Methylation_Array tumor_bone_marrow CPT0438250002 205987780094_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 1d73e2aa-ddbd-4c26-a113-df02171b9231 a3eb7e6b2ea3671bcebeca745dfbc399 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.miRNA-Seq.S42_L003_R1.Tbm C3N-00689 AML miRNA-Seq tumor_bone_marrow CPT0438260002 220125_UNC32-K00270_0311_AHMNYYBBXY_ACTGAT_S42_L003_R1_001.unaln.bam 304601294 BAM S42_L003_R1 unaligned CPTAC3 29862aaa-a254-4ba9-9c53-658f5b91310b 7c8c22db5a01db2504ba885248930f7c {"aliquot_tag": "ALQ_d4cd72c2", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.miRNA-Seq.Tbm.hg38 C3N-00689 AML miRNA-Seq tumor_bone_marrow CPT0438260002 a37aaa6f-debb-4b78-82f2-6d1d573edb2f_mirnaseq_gdc_realn.bam 335794153 BAM harmonized CPTAC3 c8dafe6f-9d1d-47f3-b0f8-a6687f879c8e 5beb3cf9882df2359565e0abb6c82285 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.RNA-Seq.chimeric.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.chimeric.gdc_realn.bam 657599802 BAM chimeric harmonized CPTAC3 e3952f8f-f46a-43d3-80db-c67da6e34b6f 1cea6de061e97ab79b4bb96c30f40148 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.RNA-Seq.genomic.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.genomic.gdc_realn.bam 7015130554 BAM genomic harmonized CPTAC3 5dbabb6e-0ee6-4c70-9778-64eef18053df 0bfcb1917b1450889ae370c8ed360350 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.RNA-Seq.S17_L005_R1.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3452486555 FASTQ S17_L005_R1 unaligned CPTAC3 a9fdc56b-5cdc-4b59-a7b3-037603f468e0 018ad349d0bf60db65da51840aaccf86 {"aliquot_tag": "ALQ_d4cd72c2", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.RNA-Seq.S17_L005_R2.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 3683983306 FASTQ S17_L005_R2 unaligned CPTAC3 739a1b27-ff73-43fe-aa21-b3005b66eb2a 36d42e58c4c002c43a0e59e1e0f05876 {"aliquot_tag": "ALQ_d4cd72c2", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.RNA-Seq.transcriptome.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.transcriptome.gdc_realn.bam 7776794318 BAM transcriptome harmonized CPTAC3 faccae86-e63a-4e6d-a01f-b73db3ba96a6 be4353e71d19aed4305dc214a6bfe537 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.WGS.Nbc C3N-00689 AML WGS buccal_normal CPT0435150001 CPT0435150001.WholeGenome.RP-2158.bam 46776921036 BAM aligned CPTAC3 968bbd86-c780-4595-a775-c8285c21cb79 7f1254ac0b243d3278208620b0356036 {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00689.WGS.Nbc.hg38 C3N-00689 AML WGS buccal_normal CPT0435150001 3e005f75-512b-468f-8f30-ca4283ae0e13_wgs_gdc_realn.bam 138205153404 BAM harmonized CPTAC3 878e413b-ef66-45a3-98c4-bc1c3dbf53cc eb4c949ccd62d8e37a21f90bb335f716 {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00689.WGS.Tbm C3N-00689 AML WGS tumor_bone_marrow CPT0438250002 CPT0438250002.WholeGenome.RP-2158.bam 49118752290 BAM aligned CPTAC3 6dfed537-9932-46dc-8355-3b1f99e6888f d99d72ec138e20354f4845062bc33387 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.WGS.Tbm.hg38 C3N-00689 AML WGS tumor_bone_marrow CPT0438250002 800a32d7-4f29-47af-8903-0cc0f3986c20_wgs_gdc_realn.bam 145848709846 BAM harmonized CPTAC3 d67370bf-7944-4bb2-91a5-ada579ec1bdd ba96137d65256eaf75b79e47ebadedf8 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.WXS.Nbc C3N-00689 AML WXS buccal_normal CPT0435150001 CPT0435150001.WholeExome.RP-1303.bam 30488196099 BAM aligned CPTAC3 2c97939c-7a4b-4418-95a0-a7ebf4bcc91b 036486c893ab53c66452d8be990b793e {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00689.WXS.Nbc.hg38 C3N-00689 AML WXS buccal_normal CPT0435150001 3e005f75-512b-468f-8f30-ca4283ae0e13_wxs_gdc_realn.bam 41415472428 BAM harmonized CPTAC3 04ff8cce-e24b-4214-b284-4556cd134563 eb29c607b5696a76f79595d77ae94b03 {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal"} -C3N-00689.WXS.Tbm C3N-00689 AML WXS tumor_bone_marrow CPT0438250002 CPT0438250002.WholeExome.RP-1303.bam 23697314874 BAM aligned CPTAC3 a1cce6b2-69a2-4eba-a610-7f59b42871a5 60b3cf312b55d3aad2c5718160609fdf {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00689.WXS.Tbm.hg38 C3N-00689 AML WXS tumor_bone_marrow CPT0438250002 800a32d7-4f29-47af-8903-0cc0f3986c20_wxs_gdc_realn.bam 32612454502 BAM harmonized CPTAC3 66fd07ec-bae8-440b-9f6d-5604342a87b2 aaf1f19b38a91220fa9c48ab09da1e88 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow"} -C3N-00704.MethArray.Green.T C3N-00704 LUAD Methylation_Array tumor CPT0055100010 202178770100_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0f140af5-499e-460f-a4ad-d175749f611b ed97abd8bee666a2a7cf02b5a3c4a4b1 {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor"} -C3N-00704.MethArray.Red.T C3N-00704 LUAD Methylation_Array tumor CPT0055100010 202178770100_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 0998b752-5a40-4c98-b761-76a3be029adf 3044d38a9640c6f33f2460262b0b69cf {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor"} -C3N-00704.miRNA-Seq.A.hg38 C3N-00704 LUAD miRNA-Seq tissue_normal CPT0062810006 e80dba5f-7e80-4ecd-811e-070978819989_mirnaseq_gdc_realn.bam 294151685 BAM harmonized CPTAC3 4e0d542d-77f3-4227-a89d-2906534b376e 057f76247205bd0d683bae5acabddc56 {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00704.miRNA-Seq.S25_L008_R1.A C3N-00704 LUAD miRNA-Seq tissue_normal CPT0062810006 181108_UNC31-K00269_0162_AH255GBBXY_ATCACG_S25_L008_R1_001.unaln.bam 270678937 BAM S25_L008_R1 unaligned CPTAC3 c6a5e772-e18c-4da9-91ae-945a6d5630e9 54fd80f14ada5fd74140aeba19040c8d {"aliquot_tag": "ALQ_7167498b", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00704.miRNA-Seq.S27_L007_R1.T C3N-00704 LUAD miRNA-Seq tumor CPT0055100014 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L007_R1_001.unaln.bam 254691766 BAM S27_L007_R1 unaligned CPTAC3 dfa77552-5bc7-4177-b744-727337745ec4 a087a47f6d6b714014b1e84f1dc68abf {"aliquot_tag": "ALQ_d73558f3", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00704.miRNA-Seq.T.hg38 C3N-00704 LUAD miRNA-Seq tumor CPT0055100014 e2d60703-5988-4131-9b7f-8934bc0d074b_mirnaseq_gdc_realn.bam 278558223 BAM harmonized CPTAC3 07fae150-4f75-4823-9663-5d1971ec07c5 d7aed7177d31043cfe2983a8a92f96e0 {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor"} -C3N-00704.RNA-Seq.chimeric.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.chimeric.gdc_realn.bam 65312364 BAM chimeric harmonized CPTAC3 960e594c-64e3-4440-901f-b7461e17b19f 6bd2c55c5143571b1bec81c378c68a4d {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00704.RNA-Seq.chimeric.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.chimeric.gdc_realn.bam 187944043 BAM chimeric harmonized CPTAC3 d83945e2-031a-4f3f-b0e5-deccd47770c2 8773f12fd5b592dad71812378e58354e {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor"} -C3N-00704.RNA-Seq.genomic.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.genomic.gdc_realn.bam 8165383094 BAM genomic harmonized CPTAC3 a9e7a8e8-8595-494c-8a6f-41dafb0a7064 bf0d2ff6779d5c4f7826dfb67b8bbf08 {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00704.RNA-Seq.genomic.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.genomic.gdc_realn.bam 7048376666 BAM genomic harmonized CPTAC3 444119f1-e698-45f7-a706-1b3250f82d09 44b61f1554c9df132e5efa56afe5cfeb {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor"} -C3N-00704.RNA-Seq.S10_L003_R1.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R1_001.fastq.gz 3868831519 FASTQ S10_L003_R1 unaligned CPTAC3 84daa27c-2280-4bc2-b098-3ebe90dc4985 f3cd8e131403c7bbe33ba45313be2526 {"aliquot_tag": "ALQ_7167498b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00704.RNA-Seq.S10_L003_R2.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R2_001.fastq.gz 3700937499 FASTQ S10_L003_R2 unaligned CPTAC3 8d8a3157-9d5b-4941-9d37-a4c2856b1bfd 7213bd19d363112ecc5858ca38a7004d {"aliquot_tag": "ALQ_7167498b", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00704.RNA-Seq.S17_L005_R1.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R1_001.fastq.gz 3615965972 FASTQ S17_L005_R1 unaligned CPTAC3 a5373c83-5859-4af0-9cc8-d3362f26794b a2fbbea5d08fe67fe757ad329fe7b3f3 {"aliquot_tag": "ALQ_d73558f3", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00704.RNA-Seq.S17_L005_R2.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R2_001.fastq.gz 3966919848 FASTQ S17_L005_R2 unaligned CPTAC3 739f05f6-8611-4727-9603-118166c1ad30 599d9b830453cc83fa377913224a371d {"aliquot_tag": "ALQ_d73558f3", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00704.RNA-Seq.transcriptome.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.transcriptome.gdc_realn.bam 9340486991 BAM transcriptome harmonized CPTAC3 90027eca-c4c5-40a1-b4cf-119760dde5ec 9eb3eac255425d3cbea669059db682cd {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00704.RNA-Seq.transcriptome.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.transcriptome.gdc_realn.bam 9688332235 BAM transcriptome harmonized CPTAC3 8bb561e0-4e4b-4aea-b8db-94bb0f1ac23d fd6b7683d1837ee88f4a0f5fea95b1bd {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor"} -C3N-00704.WGS.N C3N-00704 LUAD WGS blood_normal CPT0062910002 CPT0062910002.WholeGenome.RP-1303.bam 72481397542 BAM aligned CPTAC3 52bb15e1-f2c0-4f67-a359-009e9942b34c 09325c87b5d24a51784d9133427226af {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal"} -C3N-00704.WGS.N.hg38 C3N-00704 LUAD WGS blood_normal CPT0062910002 577f7079-4da4-43ea-9534-77fa24c616ec_gdc_realn.bam 112962603484 BAM harmonized CPTAC3 e2d7bb33-913f-4649-818d-ea17dec28c73 b60bdc9cbc4ed4593327b824d461a63d {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal"} -C3N-00704.WGS.T C3N-00704 LUAD WGS tumor CPT0055100010 CPT0055100010.WholeGenome.RP-1303.bam 78742048063 BAM aligned CPTAC3 bbb376d9-eba7-4a72-80ff-746d9495db20 fe9eae4203b2961744fe0ae839fdd782 {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor"} -C3N-00704.WGS.T.hg38 C3N-00704 LUAD WGS tumor CPT0055100010 518bf809-26b7-44df-8594-e9d18ed203b8_gdc_realn.bam 117895174497 BAM harmonized CPTAC3 96826950-6ed1-4823-9139-a25ac9973c6b 6e9aa3b347b447642e61ec5e143c60fc {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor"} -C3N-00704.WXS.N C3N-00704 LUAD WXS blood_normal CPT0062910002 CPT0062910002.WholeExome.RP-1303.bam 38030776314 BAM aligned CPTAC3 e6a2f338-334f-42ef-bc1f-2bf6eb31eab4 f103810fecf2b19bf4a3040a400a9176 {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal"} -C3N-00704.WXS.N.hg38 C3N-00704 LUAD WXS blood_normal CPT0062910002 577f7079-4da4-43ea-9534-77fa24c616ec_gdc_realn.bam 51455180690 BAM harmonized CPTAC3 bec30983-31ae-4a8d-9c04-f784734a7778 0ebbacbaf7790d0e9d8de7d55aee1275 {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal"} -C3N-00704.WXS.T C3N-00704 LUAD WXS tumor CPT0055100010 CPT0055100010.WholeExome.RP-1303.bam 31151458435 BAM aligned CPTAC3 f6c64aac-a888-479f-9991-f419c7671854 0bc1c3dbe65b66949513263bca5f2d3b {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor"} -C3N-00704.WXS.T.hg38 C3N-00704 LUAD WXS tumor CPT0055100010 518bf809-26b7-44df-8594-e9d18ed203b8_gdc_realn.bam 42478616390 BAM harmonized CPTAC3 af19c433-8960-40a3-b375-c7c7d4300868 f905be1fba084a25828a30d19bd1b510 {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor"} -C3N-00709.MethArray.Green.T C3N-00709 PDA Methylation_Array tumor CPT0203850007 203273630048_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 22de5739-70ee-4c83-a707-3c6e48655762 44ef055c5c6f651c4ab431ed1376163b {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor"} -C3N-00709.MethArray.Red.T C3N-00709 PDA Methylation_Array tumor CPT0203850007 203273630048_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 c1309361-ff17-40df-9d2c-807dc4d1632d 6a5255ae872991496e865878b9aec2fa {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor"} -C3N-00709.miRNA-Seq.S27_L005_R1.T C3N-00709 PDA miRNA-Seq tumor CPT0203850010 190712_UNC32-K00270_0192_BH7HL3BBXY_TGACCA_S27_L005_R1_001.unaln.bam 150926385 BAM S27_L005_R1 unaligned CPTAC3 f6fa144b-bcb9-4962-8ae9-02531a7c3cbb 4d193e8326a07b86c3aa82c54615707e {"aliquot_tag": "ALQ_3a71518a", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00709.miRNA-Seq.T.hg38 C3N-00709 PDA miRNA-Seq tumor CPT0203850010 cd9afa58-a602-44f1-8bf9-462a17f8f0fd_mirnaseq_gdc_realn.bam 167139008 BAM harmonized CPTAC3 71edf6d8-e671-4c63-9edf-eda188e39b9c 3d551818757789c554d21efdd3061b70 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor"} -C3N-00709.RNA-Seq.chimeric.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.chimeric.gdc_realn.bam 37275220 BAM chimeric harmonized CPTAC3 fb76ae6a-3ea2-4cf7-80b0-74ba63299038 6d360f5e0619abc6734430ef52f44627 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor"} -C3N-00709.RNA-Seq.genomic.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.genomic.gdc_realn.bam 8853054213 BAM genomic harmonized CPTAC3 a0092ac9-bf74-4e30-9821-504d5d4ea3fb 3962484d1a82e1f9d92aa27200b21c33 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor"} -C3N-00709.RNA-Seq.S29_L008_R1.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R1_001.fastq.gz 3992326363 FASTQ S29_L008_R1 unaligned CPTAC3 5533af10-acc9-4398-b820-c8b135255a5b 8a85be56b9855828c5b74ee2ed670784 {"aliquot_tag": "ALQ_3a71518a", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00709.RNA-Seq.S29_L008_R2.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R2_001.fastq.gz 4192854035 FASTQ S29_L008_R2 unaligned CPTAC3 eba68b0b-e839-4a33-b3bc-c00412f3fe80 d8919fbc8f094222c2b7eb9ef6e7b7d6 {"aliquot_tag": "ALQ_3a71518a", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00709.RNA-Seq.transcriptome.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.transcriptome.gdc_realn.bam 8793450187 BAM transcriptome harmonized CPTAC3 bffbc6d8-ef77-4c54-a872-808fc52e25ca 67588c01a4029b988de55ca338ff5367 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor"} -C3N-00709.WGS.N C3N-00709 PDA WGS blood_normal CPT0203890002 CPT0203890002.WholeGenome.RP-1303.bam 59448793303 BAM aligned CPTAC3 9c1818c0-eafb-4c5c-b2c9-c8e3aa94fc86 f83fd1944bea82452ce8c860e18090b2 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal"} -C3N-00709.WGS.N.hg38 C3N-00709 PDA WGS blood_normal CPT0203890002 63f3b721-9c0d-4e06-99d0-d5dd1df27ba4_wgs_gdc_realn.bam 85927451284 BAM harmonized CPTAC3 d9d988fc-80c7-4eb3-894f-4696dcf881de f667361efd2fc04d17871cbc2f2cd150 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal"} -C3N-00709.WGS.T C3N-00709 PDA WGS tumor CPT0203850007 CPT0203850007.WholeGenome.RP-1303.bam 122889468279 BAM aligned CPTAC3 aaf14097-526d-401a-8a74-59559f5c4e2c f3b63f389ad8b8269f17a7fc2baee62b {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor"} -C3N-00709.WGS.T.hg38 C3N-00709 PDA WGS tumor CPT0203850007 1ec93982-f625-4548-b72b-95fbe68a23fa_wgs_gdc_realn.bam 185247508376 BAM harmonized CPTAC3 06095f68-a4bf-4c25-be51-b634a545179f 26f7b405d3c9c3f5f46f3caa5902ea5b {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor"} -C3N-00709.WXS.N C3N-00709 PDA WXS blood_normal CPT0203890002 CPT0203890002.WholeExome.RP-1303.bam 26875245988 BAM aligned CPTAC3 a7e66a5b-4aaf-4185-a68f-d3f02bb0278b db0662ee27c0abb552de931e94ec82d0 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal"} -C3N-00709.WXS.N.hg38 C3N-00709 PDA WXS blood_normal CPT0203890002 63f3b721-9c0d-4e06-99d0-d5dd1df27ba4_wxs_gdc_realn.bam 36813847743 BAM harmonized CPTAC3 f9e6a620-8f7b-4795-bcca-af44701a13a3 2a51a40ab48e8133f973e5c7a1a9b617 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal"} -C3N-00709.WXS.T C3N-00709 PDA WXS tumor CPT0203850007 CPT0203850007.WholeExome.RP-1303.bam 41631944704 BAM aligned CPTAC3 ac298134-fd99-491c-b1b4-a36c1bb3c612 49b53702fa153eac76b203c1c58d4824 {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor"} -C3N-00709.WXS.T.hg38 C3N-00709 PDA WXS tumor CPT0203850007 1ec93982-f625-4548-b72b-95fbe68a23fa_wxs_gdc_realn.bam 57810034381 BAM harmonized CPTAC3 af16acc1-09e1-4074-ab86-220d9eaaf098 c77aa8ecc48a17f063a79434f1f5abbe {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor"} -C3N-00715.MethArray.Green.A C3N-00715 CCRCC Methylation_Array tissue_normal CPT0203940006 204930630107_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cc071272-915c-446c-a5fb-dfc9a93c6a44 8bb48aa0d0ed17fb9bc6bb90520ed7b4 {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.MethArray.Green.T C3N-00715 CCRCC Methylation_Array tumor CPT0203930006 203219670106_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 436287eb-0e22-4ed1-abc8-65eeb727898e 7b844aa6d890292b8a578fdb712d47bb {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor"} -C3N-00715.MethArray.Red.A C3N-00715 CCRCC Methylation_Array tissue_normal CPT0203940006 204930630107_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 996449e6-1e34-4bf5-b780-8f59aff9a97e 43d141639e642e15433a091d00592c78 {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.MethArray.Red.T C3N-00715 CCRCC Methylation_Array tumor CPT0203930006 203219670106_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 d90c900c-8827-4451-80b8-9cb79c9d59ce 42c33ede9c7e58a8018d9461e969e026 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor"} -C3N-00715.miRNA-Seq.A.hg38 C3N-00715 CCRCC miRNA-Seq tissue_normal CPT0203940009 3d4e7a1b-b0a9-4bbc-802a-f007a38872b4_mirnaseq_gdc_realn.bam 212306453 BAM harmonized CPTAC3 75630e79-767b-4a25-b49b-7d09d29877bc 79860befb4f400dbcfdefe71fc281c8d {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.miRNA-Seq.S18_L008_R1.T C3N-00715 CCRCC miRNA-Seq tumor CPT0203930009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L008_R1_001.unaln.bam 196644461 BAM S18_L008_R1 unaligned CPTAC3 53aaa613-55c7-4bba-84ed-16911ccabb9f 56fe1a2b453fb86efd6272ceb83775ff {"aliquot_tag": "ALQ_1eaafe6a", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00715.miRNA-Seq.S8_L002_R1.A C3N-00715 CCRCC miRNA-Seq tissue_normal CPT0203940009 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTTGA_S8_L002_R1_001.unaln.bam 197244732 BAM S8_L002_R1 unaligned CPTAC3 3783d254-c8b6-4145-87c1-48837dd69a62 fe8bbf6463a66199e80d2e1da2271556 {"aliquot_tag": "ALQ_ac8a227a", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.miRNA-Seq.T.hg38 C3N-00715 CCRCC miRNA-Seq tumor CPT0203930009 76eaea9b-99c9-4b62-8202-09e91ae51304_mirnaseq_gdc_realn.bam 212744699 BAM harmonized CPTAC3 b7e7d943-d712-4d6a-9bb0-6153b7ad15e7 7eb6876d914f3c8409862e23fbd1bc9a {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor"} -C3N-00715.RNA-Seq.chimeric.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.chimeric.gdc_realn.bam 34761469 BAM chimeric harmonized CPTAC3 06d883ec-dc74-41d2-8be3-197f7c8ecf65 21b26faf1b28e8714fa4718e35f4eec2 {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.RNA-Seq.chimeric.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.chimeric.gdc_realn.bam 392509198 BAM chimeric harmonized CPTAC3 2fd02f99-a172-44ff-9f2b-b783d8ba9dbe 5c5190ec4619405b3e4b1fc82bfa68a0 {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor"} -C3N-00715.RNA-Seq.genomic.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.genomic.gdc_realn.bam 9549757673 BAM genomic harmonized CPTAC3 36fef037-4f51-4433-b949-74955c94f8a2 eb7b29e303dc4d437c61fcbb30b48e90 {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.RNA-Seq.genomic.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.genomic.gdc_realn.bam 8708429886 BAM genomic harmonized CPTAC3 37d600b7-4d20-4396-8fe6-b7759655022f 20689d5b8e3612bec0f94c0032ee4d52 {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor"} -C3N-00715.RNA-Seq.S10_L003_R1.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R1_001.fastq.gz 3837113526 FASTQ S10_L003_R1 unaligned CPTAC3 13cbc902-21f0-43aa-97c5-7c5ce1817d51 ad1b56dd59eb5a7eb4d4bc28ed879e3f {"aliquot_tag": "ALQ_1eaafe6a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00715.RNA-Seq.S10_L003_R2.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R2_001.fastq.gz 4326772146 FASTQ S10_L003_R2 unaligned CPTAC3 80f776fd-c686-4428-aa33-809d3d3ebae2 735b92e5d6dac155e4430c440129332e {"aliquot_tag": "ALQ_1eaafe6a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00715.RNA-Seq.S4_L001_R1.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 3826716047 FASTQ S4_L001_R1 unaligned CPTAC3 458cc937-d7c6-4c8e-ba37-30fd0ed42c3d 26fbc0540f8b6d8187fddec0d411f69e {"aliquot_tag": "ALQ_ac8a227a", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.RNA-Seq.S4_L001_R2.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4197904251 FASTQ S4_L001_R2 unaligned CPTAC3 3ae71ad4-a3f1-4bea-91d0-fc3afdf7ec87 658732f559e901617e1ba9c1b8ce1e3f {"aliquot_tag": "ALQ_ac8a227a", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.RNA-Seq.transcriptome.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.transcriptome.gdc_realn.bam 10085290443 BAM transcriptome harmonized CPTAC3 92a842b4-51a5-4f0a-8f46-b6797bff17da d1143379230f43c946951719d5743ab1 {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.RNA-Seq.transcriptome.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.transcriptome.gdc_realn.bam 10759312886 BAM transcriptome harmonized CPTAC3 79aeee4e-361a-4c53-87f9-cc24a10fba9e 89f9d7a21720e0a00fee66a610592f4f {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor"} -C3N-00715.WGS.N C3N-00715 CCRCC WGS blood_normal CPT0203970002 CPT0203970002.WholeGenome.RP-1303.bam 59006730336 BAM aligned CPTAC3 75abcf27-9ffa-4c09-b859-ef263dbe4831 08d780b606bf04aa5a8195058be190e0 {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal"} -C3N-00715.WGS.N.hg38 C3N-00715 CCRCC WGS blood_normal CPT0203970002 ab1402df-40d6-4ae0-a989-f3e28a544fda_wgs_gdc_realn.bam 85549865401 BAM harmonized CPTAC3 670e1eac-c39f-45a3-9e4f-4cdd42af654c 1fcf96ae7b0af2ac20ad79e0825030d0 {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal"} -C3N-00715.WGS.T C3N-00715 CCRCC WGS tumor CPT0203930006 CPT0203930006.WholeGenome.RP-1303.bam 66141459656 BAM aligned CPTAC3 07658abd-12b9-4ece-a072-d5855a7a9d37 c7f5ee376afeaefdace66413b2465691 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor"} -C3N-00715.WGS.T.hg38 C3N-00715 CCRCC WGS tumor CPT0203930006 2236af7e-cf6e-4b12-b961-d9e294109659_wgs_gdc_realn.bam 99189288456 BAM harmonized CPTAC3 e56a537d-8fee-4342-aba1-b60586ef8b06 8a1e2630a6f5d074eac0a7578cabc666 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor"} -C3N-00715.WXS.A C3N-00715 CCRCC WXS tissue_normal CPT0203940006 CPT0203940006.WholeExome.RP-1303.bam 19311800074 BAM aligned CPTAC3 d693b78e-de95-4ed2-a98d-f6ca8e42c6b0 b4852836b7993c46692a10806935423a {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.WXS.A.hg38 C3N-00715 CCRCC WXS tissue_normal CPT0203940006 4649674d-3275-4ec9-87e4-b5ac2c3ee61a_wxs_gdc_realn.bam 26487471748 BAM harmonized CPTAC3 43ffe70b-5489-4d84-b5dc-85ee8672c773 a81e44b0dc800d06634d53e287ed3127 {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00715.WXS.N C3N-00715 CCRCC WXS blood_normal CPT0203970002 CPT0203970002.WholeExome.RP-1303.bam 26947997007 BAM aligned CPTAC3 8a169add-4c76-4c31-9b3a-4f4ab319ed43 48a7d5c5c331130c426ede4caa348e2a {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal"} -C3N-00715.WXS.N.hg38 C3N-00715 CCRCC WXS blood_normal CPT0203970002 ab1402df-40d6-4ae0-a989-f3e28a544fda_wxs_gdc_realn.bam 37488817173 BAM harmonized CPTAC3 1d58753d-f0e6-40b5-800a-9a7785388948 bc3cab41f3aaa3d091a6ab2141e64dfb {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal"} -C3N-00715.WXS.T C3N-00715 CCRCC WXS tumor CPT0203930006 CPT0203930006.WholeExome.RP-1303.bam 22623748702 BAM aligned CPTAC3 e8a754cf-cd6e-4070-b075-c6ff9111bb5e 1c9ebf9e46bb9c2812c80fdbf6c02771 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor"} -C3N-00715.WXS.T.hg38 C3N-00715 CCRCC WXS tumor CPT0203930006 2236af7e-cf6e-4b12-b961-d9e294109659_wxs_gdc_realn.bam 31437692755 BAM harmonized CPTAC3 3b03f465-8703-41b3-b84d-f5730e612803 91e1c1ff5094c008266071ede1fc8376 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor"} -C3N-00721.MethArray.Green.A C3N-00721 CCRCC Methylation_Array tissue_normal CPT0204020006 204930640122_R03C01_Grn.idat 13677965 IDAT Green NA CPTAC3 f9aadbe3-9941-483a-afd9-d2713213eb82 8033e3203c7ce07e76cca11d02278c7b {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.MethArray.Green.T C3N-00721 CCRCC Methylation_Array tumor CPT0204010006 203219640160_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1059fb2d-caa2-4cfe-8189-5bc378f783b5 bdf3f9cb36c7f6d937fda94d6bdcc958 {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor"} -C3N-00721.MethArray.Red.A C3N-00721 CCRCC Methylation_Array tissue_normal CPT0204020006 204930640122_R03C01_Red.idat 13677965 IDAT Red NA CPTAC3 4ef0abad-09f9-4f04-b495-f3080aef769d e1e9fc12b1bd17b0747ef61050aaec62 {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.MethArray.Red.T C3N-00721 CCRCC Methylation_Array tumor CPT0204010006 203219640160_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 370e04cb-d20a-4bd3-a5ee-0af580e6140d b8f2044206d232d3c6b60fb818e4eba3 {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor"} -C3N-00721.miRNA-Seq.A.hg38 C3N-00721 CCRCC miRNA-Seq tissue_normal CPT0204020009 f461c27a-df1e-4fb3-82aa-d35ef7ad5a77_mirnaseq_gdc_realn.bam 167597510 BAM harmonized CPTAC3 bd277164-5bb0-4506-9a99-465460415f3b 425d7aca99631c52b03122831f4934ba {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.miRNA-Seq.S19_L008_R1.T C3N-00721 CCRCC miRNA-Seq tumor CPT0204010009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L008_R1_001.unaln.bam 188803861 BAM S19_L008_R1 unaligned CPTAC3 c8f7670a-382b-48c4-805c-aec13c2bde06 19fcb61444fe8bcc1bed6e81ae9ebf24 {"aliquot_tag": "ALQ_86c2c24c", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00721.miRNA-Seq.S9_L006_R1.A C3N-00721 CCRCC miRNA-Seq tissue_normal CPT0204020009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L006_R1_001.unaln.bam 149521294 BAM S9_L006_R1 unaligned CPTAC3 926accfb-a6b2-4c27-b4fb-82e97c6ae0d5 01be3be2df84a31925d8a97d07034dbb {"aliquot_tag": "ALQ_c162b89c", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.miRNA-Seq.T.hg38 C3N-00721 CCRCC miRNA-Seq tumor CPT0204010009 2e8da10b-f4d8-494e-a276-4df9ef1eb44e_mirnaseq_gdc_realn.bam 206636498 BAM harmonized CPTAC3 d41ab74d-7e47-4eff-80ac-e983c58db827 85a0d46fc8fcf9322ca205beca5aa884 {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor"} -C3N-00721.RNA-Seq.chimeric.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.chimeric.gdc_realn.bam 38939071 BAM chimeric harmonized CPTAC3 2ef7177e-a575-4167-84a4-e87a8ed04583 895142135616b429c6e43826ff006e17 {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.RNA-Seq.chimeric.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.chimeric.gdc_realn.bam 333594160 BAM chimeric harmonized CPTAC3 aa47b7a6-da44-4187-b678-fa152d267aa2 799cc656e361883a7f68b61edb332bb3 {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor"} -C3N-00721.RNA-Seq.genomic.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.genomic.gdc_realn.bam 10199883379 BAM genomic harmonized CPTAC3 647ec72d-1c9c-44cf-81b9-c0f9cf2271e0 1c974c2f88cef46d49acd466f91dd102 {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.RNA-Seq.genomic.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.genomic.gdc_realn.bam 8080212493 BAM genomic harmonized CPTAC3 189d6983-a26a-4b26-a362-a590c1d9f24e 1b279c81a22ea72a5be2fe539dc145fa {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor"} -C3N-00721.RNA-Seq.S15_L004_R1.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R1_001.fastq.gz 3577737714 FASTQ S15_L004_R1 unaligned CPTAC3 04a32000-08f5-4a3d-be0b-5c35170913d8 b3a025d7973cddc557a51219936fe4d1 {"aliquot_tag": "ALQ_86c2c24c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00721.RNA-Seq.S15_L004_R2.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R2_001.fastq.gz 3727955624 FASTQ S15_L004_R2 unaligned CPTAC3 d157f2bc-5118-4f5f-88be-63b7bd141c17 016feac227dddb528ae7e4f34098d200 {"aliquot_tag": "ALQ_86c2c24c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00721.RNA-Seq.S5_L008_R1.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R1_001.fastq.gz 4178594326 FASTQ S5_L008_R1 unaligned CPTAC3 798d8ffc-7f64-44c5-8b14-34622e04bc92 2460955d5752b133f2cf29b55ce49c9e {"aliquot_tag": "ALQ_c162b89c", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.RNA-Seq.S5_L008_R2.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4635484464 FASTQ S5_L008_R2 unaligned CPTAC3 73fccaee-44e1-4bff-a961-0c71756e5bd7 0576027e5a7c1acbcb47bc784bf0475b {"aliquot_tag": "ALQ_c162b89c", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.RNA-Seq.transcriptome.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.transcriptome.gdc_realn.bam 10506344340 BAM transcriptome harmonized CPTAC3 ede7f877-f2da-429f-a478-ea9d0fdacf2f 243e5f449174e70f651474ec42ce96e0 {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.RNA-Seq.transcriptome.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.transcriptome.gdc_realn.bam 9480434391 BAM transcriptome harmonized CPTAC3 6618939b-cf79-43dd-abd9-43abbef452d0 e58cf23eae97cdf2ff9ec00b0abcab59 {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor"} -C3N-00721.WGS.N C3N-00721 CCRCC WGS blood_normal CPT0204210002 CPT0204210002.WholeGenome.RP-1303.bam 56305995625 BAM aligned CPTAC3 5b2dc83c-ecd8-4bd9-b86b-4685038d38c1 39dcf9f2730d1909622ab92dca645dfb {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00721.WGS.N.hg38 C3N-00721 CCRCC WGS blood_normal CPT0204210002 2064ed3d-fa0f-4f20-b282-8e3d96df5bc2_wgs_gdc_realn.bam 82396003839 BAM harmonized CPTAC3 32ab13dd-f90f-438b-b2f9-2d61a17446cd 674f3992ba2219bc00e420281be54365 {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00721.WGS.T C3N-00721 CCRCC WGS tumor CPT0204010006 CPT0204010006.WholeGenome.RP-1303.bam 61236877107 BAM aligned CPTAC3 4e998d9f-c4d9-4760-85f8-4ed374b2ee8e dfa98fa8a374a54d11b566223fef8ea2 {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor"} -C3N-00721.WGS.T.hg38 C3N-00721 CCRCC WGS tumor CPT0204010006 541ebd77-f1d2-4dd9-a538-8179f6ddfd62_wgs_gdc_realn.bam 89989540162 BAM harmonized CPTAC3 aa9f054d-09a2-456e-ac91-c8ab25cda4f3 1fe73c4128d1440ccc1e713bba82885b {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor"} -C3N-00721.WXS.A C3N-00721 CCRCC WXS tissue_normal CPT0204020006 CPT0204020006.WholeExome.RP-1303.bam 25347158382 BAM aligned CPTAC3 65eee49e-07d4-4010-9fb7-0b429ddc00ad 963c08fbbaaa8360bf87a464196da480 {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.WXS.A.hg38 C3N-00721 CCRCC WXS tissue_normal CPT0204020006 d43eff2f-4376-4496-96d2-7bb79a7dfc4a_wxs_gdc_realn.bam 34927498538 BAM harmonized CPTAC3 e78f500e-29ed-4928-97ed-58c4a567f2fd 254961c2aacebed6ba56bb3ba02681c0 {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00721.WXS.N C3N-00721 CCRCC WXS blood_normal CPT0204210002 CPT0204210002.WholeExome.RP-1303.bam 28313153077 BAM aligned CPTAC3 4f2b766c-d05c-4a3f-a12b-73dc03a5a4b8 e202000ba37d50a6a6ab3c5b2a08df71 {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00721.WXS.N.hg38 C3N-00721 CCRCC WXS blood_normal CPT0204210002 2064ed3d-fa0f-4f20-b282-8e3d96df5bc2_wxs_gdc_realn.bam 38800065481 BAM harmonized CPTAC3 7b1a6958-9898-4239-8ccd-78b19dfad847 af4915a1f788942b3ddbe754f235090f {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal"} -C3N-00721.WXS.T C3N-00721 CCRCC WXS tumor CPT0204010006 CPT0204010006.WholeExome.RP-1303.bam 25936753980 BAM aligned CPTAC3 23c5cbac-7bc5-4394-9efd-4c36ff8e4181 c9549e7b4a1b74404f303ab23bcbd4ce {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor"} -C3N-00721.WXS.T.hg38 C3N-00721 CCRCC WXS tumor CPT0204010006 541ebd77-f1d2-4dd9-a538-8179f6ddfd62_wxs_gdc_realn.bam 35498764065 BAM harmonized CPTAC3 101908b3-3502-42df-9eab-2303fb8fde49 62dd264e17768a4256fa8ab1313d70ba {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor"} -C3N-00729.MethArray.Green.T C3N-00729 UCEC Methylation_Array tumor CPT0064930010 202178770109_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 18bcfd75-18e7-4ae4-88b8-c4e4007f224c 7fddf9ddc79c0e716a92f99086a2322a {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor"} -C3N-00729.MethArray.Red.T C3N-00729 UCEC Methylation_Array tumor CPT0064930010 202178770109_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 c9ea8353-5f69-4bad-8403-a7f2cd5a335f 840cc4d0a3a784fb25284bf51a0f173a {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor"} -C3N-00729.miRNA-Seq.S1_L006_R1.T C3N-00729 UCEC miRNA-Seq tumor CPT0064930007 190228_UNC32-K00270_0151_AHYLY3BBXX_ATCACG_S1_L006_R1_001.unaln.bam 221778468 BAM S1_L006_R1 unaligned CPTAC3 adf5b52a-4946-4dd1-84df-723481420e94 d7d3cb6e17eb4f9246d17f7f317b1fe9 {"aliquot_tag": "ALQ_d42ccce2", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00729.miRNA-Seq.T.hg38 C3N-00729 UCEC miRNA-Seq tumor CPT0064930007 29d73a91-f661-43ff-b813-c3c3188204db_mirnaseq_gdc_realn.bam 250258265 BAM harmonized CPTAC3 74a41f5b-f378-4942-b4e3-df12e00d85c4 0c0e6360f15b60549f84565890674431 {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.chimeric.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.chimeric.gdc_realn.bam 69796302 BAM chimeric harmonized CPTAC3 fbca5666-de71-4f49-b633-5bd1e2807213 4cd54236b0b8f29ad192ac58b612b13f {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.chimeric.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.chimeric.gdc_realn.bam 38236007 BAM chimeric harmonized CPTAC3 51fd3224-31cc-4cce-8425-b7577b8b3526 4989269cf30d8f4f9e3856f34778faee {"aliquot_tag": "ALQ_4a9f58c6", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.genomic.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.genomic.gdc_realn.bam 7909644802 BAM genomic harmonized CPTAC3 25a0e5d6-91b6-4933-a407-6a36220782a7 8f6643750dc42caaf5a33a1391438c17 {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.genomic.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.genomic.gdc_realn.bam 4311798212 BAM genomic harmonized CPTAC3 8260a676-96c8-4aa7-9d36-1c06fdcc7ba5 5c72a77aee67385f500e12f237bbbbee {"aliquot_tag": "ALQ_4a9f58c6", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.S15_R1.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R1_001.fastq.gz 2272624657 FASTQ S15_R1 unaligned CPTAC3 19052f4d-fcab-405b-8ea4-b794722efc26 9670531e1da808c13421d5d3e4f5b92e {"aliquot_tag": "ALQ_4a9f58c6", "sample": "S15", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.S15_R2.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R2_001.fastq.gz 2364386036 FASTQ S15_R2 unaligned CPTAC3 4ea3edf7-e40c-48a8-859c-072a2db0bf48 6903fba68b239be07b8f85916fc256c5 {"aliquot_tag": "ALQ_4a9f58c6", "sample": "S15", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.S20_L006_R1.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R1_001.fastq.gz 3812942895 FASTQ S20_L006_R1 unaligned CPTAC3 2c0420b6-8299-46ed-8971-deab6b23eabf d3916ef2a840dff3ce78341c15f99612 {"aliquot_tag": "ALQ_d42ccce2", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.S20_L006_R2.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R2_001.fastq.gz 3940654655 FASTQ S20_L006_R2 unaligned CPTAC3 f783684d-96e1-46be-a19e-686d53adf650 d943e09915050bd8c2b22361a424fad0 {"aliquot_tag": "ALQ_d42ccce2", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.transcriptome.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.transcriptome.gdc_realn.bam 11157577936 BAM transcriptome harmonized CPTAC3 4f3fc47b-080b-46fa-8f1b-c1e4a22b4b71 c60f56c98a8399103a66efd013d93d54 {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor"} -C3N-00729.RNA-Seq.transcriptome.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.transcriptome.gdc_realn.bam 2427502564 BAM transcriptome harmonized CPTAC3 5c139d62-3020-4ade-8ec2-363060b37a6c 2aca15c677db91253d523e978181e890 {"aliquot_tag": "ALQ_4a9f58c6", "gdc_sample_type": "Primary Tumor"} -C3N-00729.WGS.N C3N-00729 UCEC WGS blood_normal CPT0070650002 CPT0070650002.WholeGenome.RP-1303.bam 70747202192 BAM aligned CPTAC3 b8ed770b-47a0-4845-80af-5ebe79665e31 047e69447716d4645ff6f0a34defa39e {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-00729.WGS.N.hg38 C3N-00729 UCEC WGS blood_normal CPT0070650002 4c0795d8-5700-45d5-ac34-de5f2660a99d_gdc_realn.bam 107283875180 BAM harmonized CPTAC3 bc11cdc1-7b13-4d28-b9c4-6ad617ca75f7 def58da2f2f5520f9bf6bb357c019dee {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-00729.WGS.T C3N-00729 UCEC WGS tumor CPT0064930010 CPT0064930010.WholeGenome.RP-1303.bam 69469227121 BAM aligned CPTAC3 4649d6f1-b5cb-482a-8790-72ed04fd2276 d82612b6bab948ac3b3fbb39c70bb2f2 {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor"} -C3N-00729.WGS.T.hg38 C3N-00729 UCEC WGS tumor CPT0064930010 2fbd49f6-4c1b-4bb8-a92c-27ac702d593f_gdc_realn.bam 103947209491 BAM harmonized CPTAC3 e3322e24-bb2a-494d-b11f-619c992a284d 648813984f1b5feb24e45dc9ba5a5bfc {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor"} -C3N-00729.WXS.N C3N-00729 UCEC WXS blood_normal CPT0070650002 CPT0070650002.WholeExome.RP-1303.bam 38956653324 BAM aligned CPTAC3 2f910f19-f0a4-43b5-aa6f-e257abda54ca ee6b5f9fd5871f53a71ce9b3e38340a0 {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-00729.WXS.N.hg38 C3N-00729 UCEC WXS blood_normal CPT0070650002 4c0795d8-5700-45d5-ac34-de5f2660a99d_gdc_realn.bam 53140480210 BAM harmonized CPTAC3 2706ff8e-1101-4969-a2e3-d2bdfe201e66 ddb0f77575b80b306240bda5801464cf {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-00729.WXS.T C3N-00729 UCEC WXS tumor CPT0064930010 CPT0064930010.WholeExome.RP-1303.bam 32086302894 BAM aligned CPTAC3 b52bc4e8-6556-42fb-b355-3a3a7ed55e45 f415335690bb9c7d908138e9627bab05 {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor"} -C3N-00729.WXS.T.hg38 C3N-00729 UCEC WXS tumor CPT0064930010 2fbd49f6-4c1b-4bb8-a92c-27ac702d593f_gdc_realn.bam 44630343014 BAM harmonized CPTAC3 e35e206a-6a63-428d-9ee1-634c076e34f4 7d3f9f900d050281b8eb4d5499c5202d {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor"} -C3N-00732.MethArray.Green.T C3N-00732 UCEC Methylation_Array tumor CPT0089600009 202234380051_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a268263b-71e2-4f55-be19-5f02215cb807 113280a132061b235becbb473c349b0b {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor"} -C3N-00732.MethArray.Red.T C3N-00732 UCEC Methylation_Array tumor CPT0089600009 202234380051_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 94a9b522-7da1-4ab0-8885-38791f88fc9f 13a55a2f8fd0673c853136ef4da624cd {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor"} -C3N-00732.miRNA-Seq.S4_L007_R1.T C3N-00732 UCEC miRNA-Seq tumor CPT0089600006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAAAAG_S4_L007_R1_001.unaln.bam 221859569 BAM S4_L007_R1 unaligned CPTAC3 5569f880-6676-4707-89dc-7e6425da81f8 41ff851da4cdb2a85ec4580bb44479af {"aliquot_tag": "ALQ_61804783", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00732.miRNA-Seq.T.hg38 C3N-00732 UCEC miRNA-Seq tumor CPT0089600006 34c99399-5574-4d5f-95dd-567174cd4564_mirnaseq_gdc_realn.bam 241290857 BAM harmonized CPTAC3 1babbffa-e426-41c0-a767-87df621265e2 a847651a832123f08f41c7215f8594bc {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.chimeric.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.chimeric.gdc_realn.bam 61420627 BAM chimeric harmonized CPTAC3 52ecbffd-6cfb-4cc0-9601-4bcca812d840 454be922752f2e42ba3d44523728be3f {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.chimeric.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.chimeric.gdc_realn.bam 68837977 BAM chimeric harmonized CPTAC3 7f011230-29b2-40a6-aede-04258105bfa4 20cbe1ff85ceb71d4020464399dfc897 {"aliquot_tag": "ALQ_a6474e0", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.genomic.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.genomic.gdc_realn.bam 9685747131 BAM genomic harmonized CPTAC3 ff782790-c272-4b1c-98dc-97e1c2ae83df 2585ea835d6cff21d0cd45a8778649da {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.genomic.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.genomic.gdc_realn.bam 5931318204 BAM genomic harmonized CPTAC3 7700e71e-8bde-49b9-aefe-c76b4b63b487 a2c8cf5f0efd77ea264dd9091f72f761 {"aliquot_tag": "ALQ_a6474e0", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.S21_R1.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R1_001.fastq.gz 3352594703 FASTQ S21_R1 unaligned CPTAC3 ed67403c-314c-4352-8dfd-50ddb63df81d 7666b605b616a653e46aa73385583dbf {"aliquot_tag": "ALQ_a6474e0", "sample": "S21", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.S21_R2.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R2_001.fastq.gz 3534696609 FASTQ S21_R2 unaligned CPTAC3 994dbf32-f9e5-4eeb-bc3c-92ebca3edbed 784c00f6a138065125c5901d12daf20f {"aliquot_tag": "ALQ_a6474e0", "sample": "S21", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.S7_L007_R1.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R1_001.fastq.gz 4412318758 FASTQ S7_L007_R1 unaligned CPTAC3 3571f90c-5e38-4fc8-a3fc-3dc98ca19a38 2f65f1d3dc6b525df9b041b39c0b11c9 {"aliquot_tag": "ALQ_61804783", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.S7_L007_R2.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R2_001.fastq.gz 4660981129 FASTQ S7_L007_R2 unaligned CPTAC3 69c052f4-e3ba-45c0-95f7-85356b3434d3 03aab056d319ffebf2beda4e9fe6da93 {"aliquot_tag": "ALQ_61804783", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.transcriptome.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.transcriptome.gdc_realn.bam 9860118481 BAM transcriptome harmonized CPTAC3 0ec8861e-5648-4915-aaae-d5258fbb54b6 77733efe18484fba2d279002f014b25a {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor"} -C3N-00732.RNA-Seq.transcriptome.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.transcriptome.gdc_realn.bam 3981449465 BAM transcriptome harmonized CPTAC3 7219d535-f9ce-4c49-96af-b83d16e34368 353b2c7279ddf64fc17a5fb74a10c68a {"aliquot_tag": "ALQ_a6474e0", "gdc_sample_type": "Primary Tumor"} -C3N-00732.WGS.N C3N-00732 UCEC WGS blood_normal CPT0091360002 CPT0091360002.WholeGenome.RP-1303.bam 61312316100 BAM aligned CPTAC3 76e6bff3-23ec-4287-bcb7-2f1584ab484f 0d7e164ca9a9726822a73afaa677e106 {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal"} -C3N-00732.WGS.N.hg38 C3N-00732 UCEC WGS blood_normal CPT0091360002 37b66075-5917-4067-9205-f63e6a26cc77_wgs_gdc_realn.bam 91540470246 BAM harmonized CPTAC3 177b9764-3478-4067-bc02-114a7af40061 2facdc0ee9091325c08f926132ec2494 {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal"} -C3N-00732.WGS.T C3N-00732 UCEC WGS tumor CPT0089600009 CPT0089600009.WholeGenome.RP-1303.bam 65123885581 BAM aligned CPTAC3 67937f8e-a495-4b41-8e3a-8c953ac9b883 23cf165ee8f60a81f85fa6ccb1d73e19 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor"} -C3N-00732.WGS.T.hg38 C3N-00732 UCEC WGS tumor CPT0089600009 3b194131-a71d-42d3-9af1-c87dc2865d07_wgs_gdc_realn.bam 95606552973 BAM harmonized CPTAC3 e3643df5-7688-4d4c-8757-be034f66ee6c 7ada00057636e2a4a93c0c9242a66c94 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor"} -C3N-00732.WXS.N C3N-00732 UCEC WXS blood_normal CPT0091360002 CPT0091360002.WholeExome.RP-1303.bam 30292435325 BAM aligned CPTAC3 d47417b7-4de8-473c-ad83-1ed493adb267 5ee3aa552b15ddeb1b12cefc5e74965a {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal"} -C3N-00732.WXS.N.hg38 C3N-00732 UCEC WXS blood_normal CPT0091360002 37b66075-5917-4067-9205-f63e6a26cc77_wxs_gdc_realn.bam 40858515482 BAM harmonized CPTAC3 150a6603-767c-425d-9b07-0ad7cb82ee79 cf502ca66d3fa7e1fff6ec2e0f82e6fa {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal"} -C3N-00732.WXS.T C3N-00732 UCEC WXS tumor CPT0089600009 CPT0089600009.WholeExome.RP-1303.bam 42325083232 BAM aligned CPTAC3 c96a522c-0c11-4142-8b9c-14783ab6c4d0 4f6e3b471ca649337fdad5c6d664a0c6 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor"} -C3N-00732.WXS.T.hg38 C3N-00732 UCEC WXS tumor CPT0089600009 3b194131-a71d-42d3-9af1-c87dc2865d07_wxs_gdc_realn.bam 58088447525 BAM harmonized CPTAC3 0d4d050c-a109-4b3f-87d4-9653b509a66d 169f37555e0c62c91c9a4508dbb2bdf5 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_1e8cc766.MethArray.Green.T C3N-00733 CCRCC Methylation_Array tumor CPT0025890012 204372030087_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1889f376-da83-4273-9711-0857716ff931 5fb6271f9805a8708b54e682b4c5086f {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_1e8cc766.MethArray.Red.T C3N-00733 CCRCC Methylation_Array tumor CPT0025890012 204372030087_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 62ca4ef9-6d20-42e3-9721-16f092172713 fba748dd965fc3568f0cd1b2dc1fd50b {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_1e8cc766.WGS.T C3N-00733 CCRCC WGS tumor CPT0025890012 CPT0025890012.WholeGenome.RP-2158.bam 24657860325 BAM aligned CPTAC3 e89b93f2-6a79-4c78-8714-8098be2242c7 27892958c70da1feb77849981dce8324 {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_1e8cc766.WGS.T.hg38 C3N-00733 CCRCC WGS tumor CPT0025890012 e15b8449-51aa-4dae-b6a2-091f1ce010ef_wgs_gdc_realn.bam 73929153560 BAM harmonized CPTAC3 81d5fffd-d389-4279-a6fb-7f332a77aa4a 5c349e58e86f04bf8d9d34860c23fbc9 {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_1e8cc766.WXS.T C3N-00733 CCRCC WXS tumor CPT0025890012 CPT0025890012.WholeExome.RP-1303.bam 19288413298 BAM aligned CPTAC3 732ccd38-ca36-45f9-9f8e-735ec1c0eb09 99d4f82924d1b0c1c0d6564ea6b6ec58 {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_1e8cc766.WXS.T.hg38 C3N-00733 CCRCC WXS tumor CPT0025890012 e15b8449-51aa-4dae-b6a2-091f1ce010ef_wxs_gdc_realn.bam 27064453923 BAM harmonized CPTAC3 66b8aa87-e8e1-4880-b315-99a94da8211b 6cc520263392a1e9f5eeded564f88f2a {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_56099e7b.MethArray.Green.T C3N-00733 CCRCC Methylation_Array tumor CPT0025900009 204367490056_R01C01_Grn.idat 13677888 IDAT Green NA CPTAC3 b43fac2a-3838-4f2c-8516-b93c5a2d472c 4320429665a3d2b4b42c8b2d1758a1c7 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_56099e7b.MethArray.Red.T C3N-00733 CCRCC Methylation_Array tumor CPT0025900009 204367490056_R01C01_Red.idat 13677888 IDAT Red NA CPTAC3 b918e3bb-530d-4893-b906-a16d7e529799 090d9546204fda9fac4aa16b5b3c8787 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_56099e7b.WGS.T C3N-00733 CCRCC WGS tumor CPT0025900009 CPT0025900009.WholeGenome.RP-2158.bam 22561331474 BAM aligned CPTAC3 d6cb34ea-117a-472e-b7bb-930d2970cc7a 847ca90bd9caf969f39872ef951c76c9 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_56099e7b.WGS.T.hg38 C3N-00733 CCRCC WGS tumor CPT0025900009 8074ef94-50e6-45fc-af6e-37fd9cdbc83f_wgs_gdc_realn.bam 66518211385 BAM harmonized CPTAC3 8e6cb91e-a2b4-4df0-8d8b-8d8cee3fa15d 211833a426a788c2afa5d5ccb6b19928 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_56099e7b.WXS.T C3N-00733 CCRCC WXS tumor CPT0025900009 CPT0025900009.WholeExome.RP-1303.bam 21870644758 BAM aligned CPTAC3 d95dfbb6-d3b2-4f0a-93ea-da6621ce09d4 9a8c5750e4961361229a9709f9978c7c {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_56099e7b.WXS.T.hg38 C3N-00733 CCRCC WXS tumor CPT0025900009 8074ef94-50e6-45fc-af6e-37fd9cdbc83f_wxs_gdc_realn.bam 30483446225 BAM harmonized CPTAC3 085df112-21fb-4151-bdde-ab7b0c5214ad c200a8e8418daefdfab6522dc8e51727 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_90452faf.miRNA-Seq.S28_L005_R1.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025890009 200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L005_R1_001.unaln.bam 287602700 BAM S28_L005_R1 unaligned CPTAC3 768e1e96-378a-402e-ae4a-ba49134aa900 8d987d89d6b13b6818b3fd55ec83173c {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_90452faf.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025890009 2d0b18c4-06b3-493d-8fb2-fcb6abb04ced_mirnaseq_gdc_realn.bam 320632588 BAM harmonized CPTAC3 b22f9ce1-b57b-49e3-910b-0b6e8d6b21e6 2f1710dc22210ed98c6b3d3a2a593a3c {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_90452faf.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.chimeric.gdc_realn.bam 102217423 BAM chimeric harmonized CPTAC3 69f21abe-dc80-4740-87a3-c7ff5955d7fb 4aa5af7d097d3873c5d1fdbb66e45288 {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_90452faf.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.genomic.gdc_realn.bam 8929253402 BAM genomic harmonized CPTAC3 5d25aaa8-ca65-4ba5-8d69-da251938e2ea bf256c12c372530b62507c0f998c620e {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_90452faf.RNA-Seq.S39_L007_R1.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R1_001.fastq.gz 4030868305 FASTQ S39_L007_R1 unaligned CPTAC3 683ea76b-a4d4-42bc-802f-407d86f2db8c c7622a2b8690f38d64e26f63f86104b0 {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_90452faf.RNA-Seq.S39_L007_R2.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R2_001.fastq.gz 4779589866 FASTQ S39_L007_R2 unaligned CPTAC3 3a96f82a-c491-46e5-9910-b23d52f60c71 bfea20f342d61070710e6df8183e1afa {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S39", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_90452faf.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.transcriptome.gdc_realn.bam 13524989040 BAM transcriptome harmonized CPTAC3 622a1750-04ee-49cd-88a9-9ab14bf58406 ce4db59d5a24ece47479719c7b3f3d19 {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_c6b683ea.miRNA-Seq.S35_L005_R1.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025900006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L005_R1_001.unaln.bam 216224719 BAM S35_L005_R1 unaligned CPTAC3 c2526660-c719-4477-8f3b-27879585a8ca 87fd7ebd7dce01bafadbc59e1496e354 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_c6b683ea.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025900006 28cf323b-ac0c-473c-b72a-96a357fe1ac0_mirnaseq_gdc_realn.bam 237028288 BAM harmonized CPTAC3 039c8f1e-ac79-45c1-9d13-a50d5f065529 0f3a4e81129fd198597f6bf410663bd6 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_c6b683ea.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.chimeric.gdc_realn.bam 182542817 BAM chimeric harmonized CPTAC3 93317062-fc6c-4172-9a65-f0ce05160b9a a4c6a98a4094b80e448c894684041b17 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_c6b683ea.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.genomic.gdc_realn.bam 7811256435 BAM genomic harmonized CPTAC3 8ada998d-5f05-4bc8-acbb-11a8fed18c75 a4cb42ad670e4b5620c95337ce3d4c6d {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_c6b683ea.RNA-Seq.S32_L005_R1.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R1_001.fastq.gz 3662428965 FASTQ S32_L005_R1 unaligned CPTAC3 b5289396-3301-4936-a42e-feb806cc356e 5e9662e86b8810b9c761e6007b6324fd {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_c6b683ea.RNA-Seq.S32_L005_R2.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R2_001.fastq.gz 4337400614 FASTQ S32_L005_R2 unaligned CPTAC3 d4496247-bbd6-4f4f-ae65-d46d22bfc354 15618e527b3062c6bdcf3505c8d2afa5 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00733.DUP_c6b683ea.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.transcriptome.gdc_realn.bam 11313198448 BAM transcriptome harmonized CPTAC3 cd8635d7-c1ff-441e-8d45-69f6d69ab740 39586ba82440c0ca4b85a819e61e7e37 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00733.MethArray.Green.A C3N-00733 CCRCC Methylation_Array tissue_normal CPT0025920009 203027380024_R05C01_Grn.idat 13676229 IDAT Green NA CPTAC3 8989635e-ce61-4b14-bbf7-5221e0901d19 25bbc9c7f73f3bdf7ef39c60a70b7906 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.MethArray.Green.T C3N-00733 CCRCC Methylation_Array tumor CPT0025880009 202178770100_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 219e2b7e-0c3e-4f46-9f3e-39e32e2b34a4 4dea1874bd8165e3ebe2df6002e74b47 {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor"} -C3N-00733.MethArray.Red.A C3N-00733 CCRCC Methylation_Array tissue_normal CPT0025920009 203027380024_R05C01_Red.idat 13676229 IDAT Red NA CPTAC3 926e4e40-91d5-4034-95c7-46bf906f421f 28a3382c753786ecfbea1b59608a3491 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.MethArray.Red.T C3N-00733 CCRCC Methylation_Array tumor CPT0025880009 202178770100_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 ce9e0c16-3f6c-4b49-a55e-18103148317f 27fad330e4b4b8561dab99bd3afe320a {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor"} -C3N-00733.miRNA-Seq.A.hg38 C3N-00733 CCRCC miRNA-Seq tissue_normal CPT0025920006 d68c03e8-5832-423b-a661-1849ed3f5b56_mirnaseq_gdc_realn.bam 263190005 BAM harmonized CPTAC3 57e0e4de-eb70-40e7-8529-3b78668cc771 8bf8d4895b2ecd3b760d54cbdb41131e {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.miRNA-Seq.S12_L001_R1.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025880006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGAAA_S12_L001_R1_001.unaln.bam 273686994 BAM S12_L001_R1 unaligned CPTAC3 f6242666-5eb0-4cd3-bcb3-2c238d9dc3aa 5758a2c51c186e63313a680ff7002779 {"aliquot_tag": "ALQ_3d9a1b8e", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00733.miRNA-Seq.S7_L003_R1.A C3N-00733 CCRCC miRNA-Seq tissue_normal CPT0025920006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L003_R1_001.unaln.bam 239324256 BAM S7_L003_R1 unaligned CPTAC3 59cb2240-19d9-402c-92fd-56494c90cf3c 3fabe9453f69cf54af98d210b25becfd {"aliquot_tag": "ALQ_bc76d08a", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025880006 47281ea3-2e85-4d26-af08-9d6987909ef5_mirnaseq_gdc_realn.bam 298985025 BAM harmonized CPTAC3 01c05649-de2f-4da3-a13b-415ffe3cc648 5200f48ab75abd0ddd3b046de08ef73a {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor"} -C3N-00733.RNA-Seq.chimeric.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.chimeric.gdc_realn.bam 37013443 BAM chimeric harmonized CPTAC3 92189932-53ad-4b30-8700-bc3617fa0579 df4e1f30008225a6294214a34712731d {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.chimeric.gdc_realn.bam 67200709 BAM chimeric harmonized CPTAC3 ce546501-1435-432e-b7e9-c7db89b68c7c 699d9e3f35a0ee93de4e143c291947e1 {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor"} -C3N-00733.RNA-Seq.genomic.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.genomic.gdc_realn.bam 6567931312 BAM genomic harmonized CPTAC3 8b44acd7-e881-46d0-ac33-5aaa85a2286c fdc27cd42eaf9e6f57fabe16af4c8017 {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.genomic.gdc_realn.bam 8187253488 BAM genomic harmonized CPTAC3 4c3a5fd4-15e1-42b8-b7a4-ed727b738708 4ba9edce74a29300e7fbbdc90e7d4b27 {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor"} -C3N-00733.RNA-Seq.S19_L005_R1.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3327298978 FASTQ S19_L005_R1 unaligned CPTAC3 e8f18475-f40c-430e-9d36-40289d91be5d ab80b3d07435d2c9e49ed835b7945e6e {"aliquot_tag": "ALQ_bc76d08a", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.RNA-Seq.S19_L005_R2.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R2_001.fastq.gz 3697005122 FASTQ S19_L005_R2 unaligned CPTAC3 43395028-ed4a-4afe-bd87-4f45cee73cec bc99dcda07d239643ec133d78ea06ce0 {"aliquot_tag": "ALQ_bc76d08a", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.RNA-Seq.S8_L002_R1.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R1_001.fastq.gz 3838590591 FASTQ S8_L002_R1 unaligned CPTAC3 28d915d0-355d-4a40-b2b0-4861b4223b89 3f0f8d5ec275d8a320a802bbe66e2be9 {"aliquot_tag": "ALQ_3d9a1b8e", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00733.RNA-Seq.S8_L002_R2.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4229170027 FASTQ S8_L002_R2 unaligned CPTAC3 3e6b35d1-546a-4b2c-bbdf-17548ebefbf8 584840d094b19ccd240d01cd661c9f19 {"aliquot_tag": "ALQ_3d9a1b8e", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00733.RNA-Seq.transcriptome.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.transcriptome.gdc_realn.bam 8401432832 BAM transcriptome harmonized CPTAC3 d6af54a4-820c-42b5-9773-44d22594232a feb4b33c082622719934c4affc86a465 {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.transcriptome.gdc_realn.bam 12154517211 BAM transcriptome harmonized CPTAC3 405b40a2-d677-4a78-bf1b-c24942713a40 2aeeb5526bd557952b0451a5f06174e2 {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor"} -C3N-00733.WGS.A C3N-00733 CCRCC WGS tissue_normal CPT0025920009 CPT0025920009.WholeGenome.RP-1303.bam 56669417340 BAM aligned CPTAC3 11ed7bba-50f0-421c-99ff-8a0423ce2fd8 bf047258266ff98ed3f6fface0cd6791 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.WGS.A.hg38 C3N-00733 CCRCC WGS tissue_normal CPT0025920009 cd9ca7d4-2f48-4613-a135-68b674f9c906_wgs_gdc_realn.bam 82861410237 BAM harmonized CPTAC3 a56ee9bd-ac7b-4f66-9d2c-203d2e174644 30c116716dc23e9ff20a9c4702f3b4ee {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.WGS.N C3N-00733 CCRCC WGS blood_normal CPT0028480002 CPT0028480002.WholeGenome.RP-1303.bam 59533734415 BAM aligned CPTAC3 803cbd54-d974-4b8f-b026-c6f74b345563 27d35decc9e8d0dd5a23d5355d578d7e {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00733.WGS.N.hg38 C3N-00733 CCRCC WGS blood_normal CPT0028480002 c29ed504-d297-4fc3-ad09-200319492ed4_gdc_realn.bam 85943939058 BAM harmonized CPTAC3 89f8f75e-2439-42f0-ab92-985a4af7b831 9450b7c991b6a92b49fdf07c366786b5 {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00733.WGS.T C3N-00733 CCRCC WGS tumor CPT0025880009 CPT0025880009.WholeGenome.RP-1303.bam 60363464973 BAM aligned CPTAC3 d41bfeab-b766-4784-803c-2872fa28859e 20708170ffafa0c71c3f0e6897a28a1c {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor"} -C3N-00733.WGS.T.hg38 C3N-00733 CCRCC WGS tumor CPT0025880009 2ad75cb1-668a-4d5a-b62c-254e0b82d045_gdc_realn.bam 87635615173 BAM harmonized CPTAC3 af6fcd27-b45f-488b-8c91-1370921c15fd cc5a6cc75dc0414e37b1b513b8b03077 {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor"} -C3N-00733.WXS.A C3N-00733 CCRCC WXS tissue_normal CPT0025920009 CPT0025920009.WholeExome.RP-1303.bam 45601848134 BAM aligned CPTAC3 be33fdb0-b420-4488-b721-6683032bd325 4a70bca11b7109c67dfddb060b592b3a {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.WXS.A.hg38 C3N-00733 CCRCC WXS tissue_normal CPT0025920009 cd9ca7d4-2f48-4613-a135-68b674f9c906_wxs_gdc_realn.bam 61570062513 BAM harmonized CPTAC3 c0d2255b-795b-48ba-b3c2-f6a86e08301a 0f9935ce3cb211288512391b79cbd8e9 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00733.WXS.N C3N-00733 CCRCC WXS blood_normal CPT0028480002 CPT0028480002.WholeExome.RP-1303.bam 27066837322 BAM aligned CPTAC3 17009ae6-288a-4c09-aa0a-98c65920d0d2 3ba696e6bc84f1bd1b225dd598520679 {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00733.WXS.N.hg38 C3N-00733 CCRCC WXS blood_normal CPT0028480002 c29ed504-d297-4fc3-ad09-200319492ed4_gdc_realn.bam 36976648847 BAM harmonized CPTAC3 a4d7873b-dd6b-4f7d-bd66-ed3379d93007 14dbf41bc07122b3f3a7a452809aafcc {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00733.WXS.T C3N-00733 CCRCC WXS tumor CPT0025880009 CPT0025880009.WholeExome.RP-1303.bam 26311645155 BAM aligned CPTAC3 a0740eef-1b59-412e-9a8f-3bc23ac32118 25017768fec088a13e94212dbfa4278b {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor"} -C3N-00733.WXS.T.hg38 C3N-00733 CCRCC WXS tumor CPT0025880009 2ad75cb1-668a-4d5a-b62c-254e0b82d045_gdc_realn.bam 36133726733 BAM harmonized CPTAC3 2475e5cf-cadc-48ea-af0e-fc1b20eaf8a8 7096527d318250909c775e2bba0cf918 {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor"} -C3N-00734.MethArray.Green.T C3N-00734 UCEC Methylation_Array tumor CPT0026030010 202178770083_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ec216333-38e0-450c-80a1-4e772ff8c366 1f4dd59576250e512f31bb2cdc3feda6 {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor"} -C3N-00734.MethArray.Red.T C3N-00734 UCEC Methylation_Array tumor CPT0026030010 202178770083_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 0b6317cf-1057-479b-80d8-89a9c2b8a988 e5e68ca1aa753c4b678733905593da1a {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor"} -C3N-00734.miRNA-Seq.S44_L005_R1.T C3N-00734 UCEC miRNA-Seq tumor CPT0026030007 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L005_R1_001.unaln.bam 191511272 BAM S44_L005_R1 unaligned CPTAC3 1d3c45de-6c7a-4710-af2a-dd87c6483bf4 6489ff797e85aefbd136070379bb4725 {"aliquot_tag": "ALQ_e0f682f9", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00734.miRNA-Seq.T.hg38 C3N-00734 UCEC miRNA-Seq tumor CPT0026030007 f7b784b2-9b9c-4f03-9cdd-41dcc512c96a_mirnaseq_gdc_realn.bam 212929994 BAM harmonized CPTAC3 cabb9bdf-3fc0-490a-92b3-0c94b1f33fed 6197af6adfceed2fe1a4fcc0045a1f07 {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.chimeric.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.chimeric.gdc_realn.bam 50823506 BAM chimeric harmonized CPTAC3 db3f2e50-2fc3-40a7-99b8-d744bb0af890 70f67394d776ad5676004723f296d15f {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.chimeric.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.chimeric.gdc_realn.bam 48103922 BAM chimeric harmonized CPTAC3 1002c63b-5759-49d8-b272-ada70eef9319 a4ed61193047c68abd77f299ffd55551 {"aliquot_tag": "ALQ_43253f6d", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.genomic.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.genomic.gdc_realn.bam 8729990643 BAM genomic harmonized CPTAC3 da198d96-6999-4a8a-b2e9-0db17b81e7ae 3f93d33baf15a43d1e645da7854b5ff6 {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.genomic.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.genomic.gdc_realn.bam 17443474399 BAM genomic harmonized CPTAC3 5e74605c-b4bf-4fcd-b0db-b279d4c3dabd 912023536fbffcfe029d78689fa2f70f {"aliquot_tag": "ALQ_43253f6d", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.S75_R1.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R1_001.fastq.gz 8517069624 FASTQ S75_R1 unaligned CPTAC3 bef96fc9-2027-4514-b529-268a201cd862 ac739a2957fdcf4f348042c211ea57ef {"aliquot_tag": "ALQ_43253f6d", "sample": "S75", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.S75_R2.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R2_001.fastq.gz 9188877157 FASTQ S75_R2 unaligned CPTAC3 f3b1bc9b-5720-4770-ba78-e4dd8d3f784e 9ed8951cba75fafd4090bce1fe3ead16 {"aliquot_tag": "ALQ_43253f6d", "sample": "S75", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.S7_L002_R1.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3795451643 FASTQ S7_L002_R1 unaligned CPTAC3 9faa7052-ed20-4706-97f2-c3f183a4a0bd 0d1fa653e6f23d22403f7532778a9346 {"aliquot_tag": "ALQ_e0f682f9", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.S7_L002_R2.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4182385550 FASTQ S7_L002_R2 unaligned CPTAC3 4518b21b-b9a3-4261-b0e1-27b9f7d0e282 f89526247cdc2cc108ca05871fd3c2b9 {"aliquot_tag": "ALQ_e0f682f9", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.transcriptome.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.transcriptome.gdc_realn.bam 11773631206 BAM transcriptome harmonized CPTAC3 665a2ae1-096f-48f9-9bad-6e1a3b110d19 4e06688364ce06b0aa04e85f0d0f0810 {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor"} -C3N-00734.RNA-Seq.transcriptome.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.transcriptome.gdc_realn.bam 13406287478 BAM transcriptome harmonized CPTAC3 27ab7428-ab97-47a1-aaf5-929c3bd4dba1 62751a8f3a07dc1d0b3bb7cd4463fccb {"aliquot_tag": "ALQ_43253f6d", "gdc_sample_type": "Primary Tumor"} -C3N-00734.WGS.N C3N-00734 UCEC WGS blood_normal CPT0028500002 CPT0028500002.WholeGenome.RP-1303.bam 60380365868 BAM aligned CPTAC3 c910a937-941a-40c3-ae7a-60b10e1d431d 9943c4e1a2bd20b229b547ee415d51c1 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal"} -C3N-00734.WGS.N.hg38 C3N-00734 UCEC WGS blood_normal CPT0028500002 d17afc43-9d34-4784-87aa-12c19595d871_gdc_realn.bam 87704873123 BAM harmonized CPTAC3 8a8cced8-56c3-41d5-aaab-2cb28481e9c1 1ddc37d7e7c543d3e9e71d5cd79bd8c9 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal"} -C3N-00734.WGS.T C3N-00734 UCEC WGS tumor CPT0026030010 CPT0026030010.WholeGenome.RP-1303.bam 63714294069 BAM aligned CPTAC3 a5dbaf32-01b9-49cb-bf04-ad5d55818385 6dfd38205e4b50d02d7f6e45d9c01c2d {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor"} -C3N-00734.WGS.T.hg38 C3N-00734 UCEC WGS tumor CPT0026030010 0750565e-93eb-43b6-87d3-8f84199fc1a0_gdc_realn.bam 92936727303 BAM harmonized CPTAC3 2a812ded-32cc-466b-9ede-be47f74903f7 a7fd6cb74cc340a91a83a5e75768f084 {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor"} -C3N-00734.WXS.N C3N-00734 UCEC WXS blood_normal CPT0028500002 CPT0028500002.WholeExome.RP-1303.bam 46719531936 BAM aligned CPTAC3 e47c2ca6-cc2b-4d41-a788-21a8419bb2d5 b655abaf25a4fd6fa692296f04a201b3 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal"} -C3N-00734.WXS.N.hg38 C3N-00734 UCEC WXS blood_normal CPT0028500002 d17afc43-9d34-4784-87aa-12c19595d871_gdc_realn.bam 63279979402 BAM harmonized CPTAC3 c9c4d8b9-6c91-46e1-b6f8-d759c7f02165 915bed86f097d050a3ccf9c268f8c0c9 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal"} -C3N-00734.WXS.T C3N-00734 UCEC WXS tumor CPT0026030010 CPT0026030010.WholeExome.RP-1303.bam 21147107786 BAM aligned CPTAC3 51a2d1b9-cfa4-4dee-8422-a3d360c47bd6 bb873635f548143a1786a4429c6efe6a {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor"} -C3N-00734.WXS.T.hg38 C3N-00734 UCEC WXS tumor CPT0026030010 0750565e-93eb-43b6-87d3-8f84199fc1a0_gdc_realn.bam 28616224542 BAM harmonized CPTAC3 b3fb76a3-c463-4fc1-b12c-88dbe5285071 b20fa96d5df4eb711fa2f6c8b7a7fb3d {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor"} -C3N-00737.MethArray.Green.A C3N-00737 LUAD Methylation_Array tissue_normal CPT0090200008 203027390105_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7be69897-5c56-487e-b584-6b37a583b3a6 22aef4ca2180efd7a1b6d7901a62f613 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.MethArray.Green.T C3N-00737 LUAD Methylation_Array tumor CPT0090170010 202234380062_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b5f38a69-2957-455e-bf33-ab48402cafdb ebbf5d9e2a8c4982cab2d0d268b29746 {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor"} -C3N-00737.MethArray.Red.A C3N-00737 LUAD Methylation_Array tissue_normal CPT0090200008 203027390105_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 be4179c6-f5d6-4fcf-8123-0477321f52bf 97e174389899195bfaee8ef4138062f5 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.MethArray.Red.T C3N-00737 LUAD Methylation_Array tumor CPT0090170010 202234380062_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 f5dea8c1-18b8-419a-b670-4c0c1dbd2b5e 1ec388f3ac5ee304a042ce88ed444abc {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor"} -C3N-00737.miRNA-Seq.A.hg38 C3N-00737 LUAD miRNA-Seq tissue_normal CPT0090200006 70b4344b-59b0-4875-92ed-ad1473fff315_mirnaseq_gdc_realn.bam 208674821 BAM harmonized CPTAC3 fdb5ea2a-af1d-4585-b83c-d07a08506a4e 6968c0f759a79d889171e05ee0430d0a {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.miRNA-Seq.S21_L006_R1.T C3N-00737 LUAD miRNA-Seq tumor CPT0090170007 180828_UNC32-K00270_0112_AHWTLNBBXX_TTAGGC_S21_L006_R1_001.unaln.bam 244502731 BAM S21_L006_R1 unaligned CPTAC3 b4285cdb-4bc2-4a89-ac85-70d4b82b0247 707d3a19dcea323c6498dd4f68b2559d {"aliquot_tag": "ALQ_e090def0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00737.miRNA-Seq.S5_L005_R1.A C3N-00737 LUAD miRNA-Seq tissue_normal CPT0090200006 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L005_R1_001.unaln.bam 186980065 BAM S5_L005_R1 unaligned CPTAC3 c0d7278f-9d27-4864-a102-20f986fcbc50 248a7a5cf49dc3fc485b47b2edd4f4a2 {"aliquot_tag": "ALQ_a32340d8", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.miRNA-Seq.T.hg38 C3N-00737 LUAD miRNA-Seq tumor CPT0090170007 72f6d62c-9789-48c1-8857-feb141779af2_mirnaseq_gdc_realn.bam 270343466 BAM harmonized CPTAC3 899b845e-c859-43fe-a784-10a241551704 471a3f45e9302dd196cbedd532fba6a1 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor"} -C3N-00737.RNA-Seq.chimeric.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.chimeric.gdc_realn.bam 71388572 BAM chimeric harmonized CPTAC3 28ba2aea-8bc7-44a7-80cb-426292597593 c252cca73151618c6c48bc7565792d37 {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.RNA-Seq.chimeric.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.chimeric.gdc_realn.bam 35280661 BAM chimeric harmonized CPTAC3 13f5d040-c163-4022-b40f-b039883129ef d3e0cf03eee5b3fce4123cb2fe4f8d12 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor"} -C3N-00737.RNA-Seq.genomic.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.genomic.gdc_realn.bam 7117464114 BAM genomic harmonized CPTAC3 1bf34b9f-3d5a-46e7-b57a-34a9bc369885 0e2d14bcbcc08a6bd880ecaf2f9d9387 {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.RNA-Seq.genomic.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.genomic.gdc_realn.bam 10221050800 BAM genomic harmonized CPTAC3 9acd2dd7-96b3-4930-b029-4bb7fec01649 c22fd1f682e4d8b78152e154cb4cc5f3 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor"} -C3N-00737.RNA-Seq.S17_L007_R1.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 3445933848 FASTQ S17_L007_R1 unaligned CPTAC3 26b74818-5c49-4a93-ad0b-d5656b51ac02 0161c0506efa87ec40bbd171dc44ccc1 {"aliquot_tag": "ALQ_a32340d8", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.RNA-Seq.S17_L007_R2.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 3633805992 FASTQ S17_L007_R2 unaligned CPTAC3 b8af1e2c-a7c8-4e2d-9310-b85515af594b b2d8317b123b7a3f8eaa51eaafcbf226 {"aliquot_tag": "ALQ_a32340d8", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.RNA-Seq.S8_L002_R1.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3932735138 FASTQ S8_L002_R1 unaligned CPTAC3 0cf24649-f4d0-499c-b410-101dd0355bdf 5ef82476ead15e70161ebcd0de4edfb4 {"aliquot_tag": "ALQ_e090def0", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00737.RNA-Seq.S8_L002_R2.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4279708360 FASTQ S8_L002_R2 unaligned CPTAC3 ca93f4e9-eb76-4ea8-b818-db5ebd003cb1 6dea5974b633cbc5a6e59785f208267d {"aliquot_tag": "ALQ_e090def0", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00737.RNA-Seq.transcriptome.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.transcriptome.gdc_realn.bam 8319978985 BAM transcriptome harmonized CPTAC3 7464fc8b-c3d5-490a-8bec-4a6240c9098e b8e3beb458ce15d2b79dbbd0fd094a64 {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.RNA-Seq.transcriptome.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.transcriptome.gdc_realn.bam 9888296326 BAM transcriptome harmonized CPTAC3 cc7d30e2-a8fb-47d3-aeab-bab9c126e478 9f273a96dbf9f9fdbf6f5cf95404c148 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor"} -C3N-00737.WGS.A C3N-00737 LUAD WGS tissue_normal CPT0090200008 CPT0090200008.WholeGenome.RP-1303.bam 53856792697 BAM aligned CPTAC3 07ededa8-b079-43d7-87b1-2cd20d4fd449 556e3f2e0be2ab20f7218d067d45ab36 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.WGS.A.hg38 C3N-00737 LUAD WGS tissue_normal CPT0090200008 d97ee735-5b0e-4f83-8eab-9401da6506f9_wgs_gdc_realn.bam 78239175794 BAM harmonized CPTAC3 ca45eef1-d1e6-46ac-95e0-4a12f7984594 cbafa0ad6c8cc4400f181c22cdb9b01e {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.WGS.N C3N-00737 LUAD WGS blood_normal CPT0091440002 CPT0091440002.WholeGenome.RP-1303.bam 62269641593 BAM aligned CPTAC3 01e2c890-8ae2-4a77-913e-6305b4ebe2c2 bd48b869b72a31da457fffc8ff930ae2 {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00737.WGS.N.hg38 C3N-00737 LUAD WGS blood_normal CPT0091440002 fec6902d-836e-4e54-a217-9dfae7cce48e_wgs_gdc_realn.bam 92316798434 BAM harmonized CPTAC3 91814b2e-3f44-4380-8546-d155057cd989 8b08aa0128446a86a65421ca6487e567 {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00737.WGS.T C3N-00737 LUAD WGS tumor CPT0090170010 CPT0090170010.WholeGenome.RP-1303.bam 60276933296 BAM aligned CPTAC3 8d158cc5-76e5-4c2f-89cb-e70990510ea7 d93786d5a89b3bcccd24d5b0c593d633 {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor"} -C3N-00737.WGS.T.hg38 C3N-00737 LUAD WGS tumor CPT0090170010 0bf8d63d-3245-4ce1-8aab-f1fd4c0d94f6_wgs_gdc_realn.bam 88896219625 BAM harmonized CPTAC3 16f33b65-f446-4305-8c47-38511e55f088 5405bd7952b0042815f2f20d7bddce5b {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor"} -C3N-00737.WXS.A C3N-00737 LUAD WXS tissue_normal CPT0090200008 CPT0090200008.WholeExome.RP-1303.bam 28957481205 BAM aligned CPTAC3 e351b74a-7c14-4f9c-838e-42b96b2579b9 acd330a35556ee67977c936cae6bd711 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.WXS.A.hg38 C3N-00737 LUAD WXS tissue_normal CPT0090200008 d97ee735-5b0e-4f83-8eab-9401da6506f9_wxs_gdc_realn.bam 39779367138 BAM harmonized CPTAC3 1aa8ed13-eb18-43ca-942d-3000af0faa8f 84453f2460ac2c0bd843820ff8b970a3 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00737.WXS.N C3N-00737 LUAD WXS blood_normal CPT0091440002 CPT0091440002.WholeExome.RP-1303.bam 35674254211 BAM aligned CPTAC3 7bef8e90-2c2b-450a-9d9c-fda876fcf290 8f3881c7af5aa04af5a5ce34de3504a8 {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00737.WXS.N.hg38 C3N-00737 LUAD WXS blood_normal CPT0091440002 fec6902d-836e-4e54-a217-9dfae7cce48e_wxs_gdc_realn.bam 46886363270 BAM harmonized CPTAC3 1e35483d-3edb-4be6-88ae-381b56a4b0c1 523789afb108f87ea7bb977e65cfce6e {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-00737.WXS.T C3N-00737 LUAD WXS tumor CPT0090170010 CPT0090170010.WholeExome.RP-1303.bam 34767878710 BAM aligned CPTAC3 170c6129-9f38-499b-a528-b59eecd02273 21bd571e9765e79658474498b03b0286 {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor"} -C3N-00737.WXS.T.hg38 C3N-00737 LUAD WXS tumor CPT0090170010 0bf8d63d-3245-4ce1-8aab-f1fd4c0d94f6_wxs_gdc_realn.bam 46700398588 BAM harmonized CPTAC3 05e7eacc-00d3-4660-9c77-6bf1c2d66645 34e647092639e4f5bc6b0b82d6190b6d {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor"} -C3N-00738.DUP_5d166d88.WGS.T C3N-00738 LUAD WGS tumor CPT0112060009_2 CPT0112060009_2.WholeGenome.RP-2158.bam 154077440808 BAM aligned CPTAC3 94a31beb-521c-44b1-b306-9d0532bbd7d4 cceb8d50b2f7ad07cabad64ea6dfd7d1 {"aliquot_tag": "DUP_5d166d88", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00738.DUP_5d166d88.WGS.T.hg38 C3N-00738 LUAD WGS tumor CPT0112060009_2 f841b8b6-56fe-480c-8f34-d15a55acc14b_wgs_gdc_realn.bam 463286204766 BAM harmonized CPTAC3 116d9a61-1509-487b-ba1d-ffbb4c674bd0 2b299366f5e9d0aae8e9298ff6599c81 {"aliquot_tag": "DUP_5d166d88", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00738.MethArray.Green.A C3N-00738 LUAD Methylation_Array tissue_normal CPT0112080009 203028200104_R04C01_Grn.idat 13676235 IDAT Green NA CPTAC3 d698d456-1bb2-45d6-8fb8-ad0defd06f10 f7034fcf8b8323fe84bdce6b3db07f3c {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.MethArray.Green.T C3N-00738 LUAD Methylation_Array tumor CPT0112060009 202234380061_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f87a6472-ced1-49ec-8afb-0e9635927e31 41af4d424a4efb143da487378c77fd01 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor"} -C3N-00738.MethArray.Red.A C3N-00738 LUAD Methylation_Array tissue_normal CPT0112080009 203028200104_R04C01_Red.idat 13676235 IDAT Red NA CPTAC3 1dc9dd5b-03e1-4455-819a-262846683059 e3f06bfa00868c845829e98c863d862a {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.MethArray.Red.T C3N-00738 LUAD Methylation_Array tumor CPT0112060009 202234380061_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 35de26ce-50a7-4ed9-aa17-52d099634bed 581864114534bf28d796d625e7f30101 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor"} -C3N-00738.miRNA-Seq.A.hg38 C3N-00738 LUAD miRNA-Seq tissue_normal CPT0112080006 a9fe3af5-6dfa-4ab2-9a85-816f4531f913_mirnaseq_gdc_realn.bam 267977033 BAM harmonized CPTAC3 5a44d102-ef99-42be-8eb0-20fec87281a8 895b52c350295aec52644e67fc3dcee6 {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.miRNA-Seq.S36_L002_R1.T C3N-00738 LUAD miRNA-Seq tumor CPT0112060006 181113_UNC31-K00269_0164_AH23NNBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 299660493 BAM S36_L002_R1 unaligned CPTAC3 03d631d0-ad05-40ba-b558-fb3d4e92027b 005c6999b634ee779e18c1f77808b470 {"aliquot_tag": "ALQ_32aa0aac", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00738.miRNA-Seq.S37_L008_R1.A C3N-00738 LUAD miRNA-Seq tissue_normal CPT0112080006 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L008_R1_001.unaln.bam 245046421 BAM S37_L008_R1 unaligned CPTAC3 978ed708-acdc-413f-92cb-6b402283d225 befd2fb09d938dc4fc73dfd184f90e8a {"aliquot_tag": "ALQ_8d9ab4cd", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.miRNA-Seq.T.hg38 C3N-00738 LUAD miRNA-Seq tumor CPT0112060006 acedee26-c758-4bf5-91b1-78bc39abf825_mirnaseq_gdc_realn.bam 327446831 BAM harmonized CPTAC3 bbbd1abe-eab7-47db-afb0-628db88dc903 d15cc6431d0d9480228f16bfcfbf65db {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor"} -C3N-00738.RNA-Seq.chimeric.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.chimeric.gdc_realn.bam 82807079 BAM chimeric harmonized CPTAC3 76a953dc-eb3a-454e-b423-6127409d7c29 66b5c7c6c18c699e775f4d9a8764165b {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.RNA-Seq.chimeric.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.chimeric.gdc_realn.bam 110878787 BAM chimeric harmonized CPTAC3 606f76a5-5c6c-495c-9ba2-89da45139cd9 5b22d506270ef619bbc889f10dba5333 {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor"} -C3N-00738.RNA-Seq.genomic.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.genomic.gdc_realn.bam 8503007402 BAM genomic harmonized CPTAC3 5d0f1a8b-8ea6-42c8-a8a6-3fec8d799b54 c7bd4c0b245d998e30a4f17f03471157 {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.RNA-Seq.genomic.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.genomic.gdc_realn.bam 9410522822 BAM genomic harmonized CPTAC3 fab1da6f-bec2-4771-ac6a-aa94125a45aa c08c1669a23c4a65d0d26532a9c1edc7 {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor"} -C3N-00738.RNA-Seq.S18_L005_R1.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3825955251 FASTQ S18_L005_R1 unaligned CPTAC3 c03373bb-4980-4327-af54-3ce878036954 d7e3f3a0d8b47b42be7fc4bf8162ce95 {"aliquot_tag": "ALQ_32aa0aac", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00738.RNA-Seq.S18_L005_R2.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4322051244 FASTQ S18_L005_R2 unaligned CPTAC3 813ce019-4a21-49cc-8e0f-ea7b756a0098 9558daba2b3bbc005ae7c6d4f30ebadf {"aliquot_tag": "ALQ_32aa0aac", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00738.RNA-Seq.S80_L008_R1.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R1_001.fastq.gz 4068920168 FASTQ S80_L008_R1 unaligned CPTAC3 b8e3505e-43ad-4883-99b3-fc6b1db5630a c08ead3a0c40643e94ad47a9b1c13d5f {"aliquot_tag": "ALQ_8d9ab4cd", "sample": "S80", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.RNA-Seq.S80_L008_R2.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R2_001.fastq.gz 4363912702 FASTQ S80_L008_R2 unaligned CPTAC3 ceddd54a-d07f-49ea-a755-4a0ea3be8eb9 72553bf99b92d3ce5a4947d43ced57a4 {"aliquot_tag": "ALQ_8d9ab4cd", "sample": "S80", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.RNA-Seq.transcriptome.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.transcriptome.gdc_realn.bam 9882113482 BAM transcriptome harmonized CPTAC3 61ee7722-ac5f-4f76-bb7d-52a0952f92cc d1176d02be0ed0a3e893a20250875c61 {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.RNA-Seq.transcriptome.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.transcriptome.gdc_realn.bam 9549015173 BAM transcriptome harmonized CPTAC3 847a44f1-860d-4941-9fd3-61d0f01c40fa d3d6a89722b1dc122ef36e603603ab53 {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor"} -C3N-00738.WGS.A C3N-00738 LUAD WGS tissue_normal CPT0112080009 CPT0112080009.WholeGenome.RP-1303.bam 56296939058 BAM aligned CPTAC3 93abc092-48ea-46af-8a32-89742efc592c 9847e9ba02595d0726f106e18de100a3 {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.WGS.A.hg38 C3N-00738 LUAD WGS tissue_normal CPT0112080009 643e6040-6a88-47a8-98d8-8ef4f1e2e9fb_wgs_gdc_realn.bam 81323277017 BAM harmonized CPTAC3 9dd20f55-cf21-4059-95bc-eb58c1c89df9 4b9506297f7837468003923415ed351d {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.WGS.N C3N-00738 LUAD WGS blood_normal CPT0112180002 CPT0112180002.WholeGenome.RP-1303.bam 67071194409 BAM aligned CPTAC3 a9a0dc76-964a-495b-be50-ca660cc027fa bdcddce910cc5c2e9b5c5c8b55b2b45d {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal"} -C3N-00738.WGS.N.hg38 C3N-00738 LUAD WGS blood_normal CPT0112180002 685d5364-aae3-4291-8104-7f616deea3ef_wgs_gdc_realn.bam 97963432308 BAM harmonized CPTAC3 30ae2920-9929-4fae-81b0-37460fc129af a511678b1f22b83f6b1c8c3c279e8caa {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal"} -C3N-00738.WGS.T C3N-00738 LUAD WGS tumor CPT0112060009 CPT0112060009.WholeGenome.RP-1303.bam 61677627882 BAM aligned CPTAC3 a56e7db7-a2bb-4c78-a11b-19e6e0d217af 639531b1de1529f226915198f1d4c1af {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor"} -C3N-00738.WGS.T.hg38 C3N-00738 LUAD WGS tumor CPT0112060009 3bd3461d-938c-44f1-96d1-232f0174c7cf_wgs_gdc_realn.bam 89858811900 BAM harmonized CPTAC3 afb602be-8c13-4f89-b5d8-ec5fdc56c661 5e603d55dcd3b67c4c15dd61c6c2c651 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor"} -C3N-00738.WXS.A C3N-00738 LUAD WXS tissue_normal CPT0112080009 CPT0112080009.WholeExome.RP-1303.bam 35997796274 BAM aligned CPTAC3 25aea754-f684-4859-8a96-9f7d584589e4 acb0d2737b4035e260fe52365521592d {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.WXS.A.hg38 C3N-00738 LUAD WXS tissue_normal CPT0112080009 643e6040-6a88-47a8-98d8-8ef4f1e2e9fb_wxs_gdc_realn.bam 48926508871 BAM harmonized CPTAC3 df972ff7-76a0-4703-a9cd-a24fdc232f5c 6f892331ed2ce9dcbecee068b5c75fcb {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00738.WXS.N C3N-00738 LUAD WXS blood_normal CPT0112180002 CPT0112180002.WholeExome.RP-1303.bam 41373238340 BAM aligned CPTAC3 8be0de8d-ea56-453b-ba11-6226a2887c34 8d3f33b62d7dd872e9ca6a6ca15fb48d {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal"} -C3N-00738.WXS.N.hg38 C3N-00738 LUAD WXS blood_normal CPT0112180002 685d5364-aae3-4291-8104-7f616deea3ef_wxs_gdc_realn.bam 54454146539 BAM harmonized CPTAC3 f5d24087-c903-45d6-8b09-0507bec897a8 fee795d4a3629bba4381b5f291340676 {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal"} -C3N-00738.WXS.T C3N-00738 LUAD WXS tumor CPT0112060009 CPT0112060009.WholeExome.RP-1303.bam 30591379042 BAM aligned CPTAC3 2a8c471f-e475-43f2-937b-194e5d2d2747 1965de0357c952b992b774805682db38 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor"} -C3N-00738.WXS.T.hg38 C3N-00738 LUAD WXS tumor CPT0112060009 3bd3461d-938c-44f1-96d1-232f0174c7cf_wxs_gdc_realn.bam 42246554098 BAM harmonized CPTAC3 bb1b2e2f-49b2-4bf4-9c2b-bc78078baa74 9559b5b6c18a6db56e160f827951ec58 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor"} -C3N-00743.MethArray.Green.T C3N-00743 UCEC Methylation_Array tumor CPT0062940009 202163550072_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 86956549-3c21-4c29-9247-208b2af450eb f4998c94ee2b00ae9cec8bbbb7516e3a {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor"} -C3N-00743.MethArray.Red.T C3N-00743 UCEC Methylation_Array tumor CPT0062940009 202163550072_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 3da68fa3-5b1b-4583-8f80-638bb2adcf39 e06de1bfa1709dfe3d3542bc5aedabc3 {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor"} -C3N-00743.miRNA-Seq.S24_L005_R1.T C3N-00743 UCEC miRNA-Seq tumor CPT0062940006 181119_UNC31-K00269_0165_AH27WCBBXY_TCGGCA_S24_L005_R1_001.unaln.bam 185922173 BAM S24_L005_R1 unaligned CPTAC3 b8164afc-b7ee-463d-8645-7cf4340c561a 6ebaf6e4187b7efe152e7a794fab78ef {"aliquot_tag": "ALQ_72db155e", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00743.miRNA-Seq.T.hg38 C3N-00743 UCEC miRNA-Seq tumor CPT0062940006 b342de54-a3e0-49ff-be98-34d7a388ab3d_mirnaseq_gdc_realn.bam 205293911 BAM harmonized CPTAC3 96f02882-662c-4384-a49b-1eda0ad3da5b c231d9279185e816042ff1bf247a71a1 {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.chimeric.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.chimeric.gdc_realn.bam 117501617 BAM chimeric harmonized CPTAC3 2fe1decd-1e68-4f75-beb6-512a7ff83dab 4cb5928e51640791b427d3ef41f2a148 {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.chimeric.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.chimeric.gdc_realn.bam 105079699 BAM chimeric harmonized CPTAC3 340daef7-6fd0-4c61-9cb4-f60a61b10d48 97ef46a45e730add906e9412b7971288 {"aliquot_tag": "ALQ_294f6dfc", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.genomic.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.genomic.gdc_realn.bam 14105392292 BAM genomic harmonized CPTAC3 4e63eef5-a08e-4b2b-930f-18cd2fbc783f d0fcaacef99a3aa2baf1a4e16466e71f {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.genomic.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.genomic.gdc_realn.bam 6839504753 BAM genomic harmonized CPTAC3 426dfcae-c093-4a16-95d3-e5a36919fb89 cb4d6fd63d2b5a77b73670c168081031 {"aliquot_tag": "ALQ_294f6dfc", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.S11_R1.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R1_001.fastq.gz 4144866693 FASTQ S11_R1 unaligned CPTAC3 d6e94cf3-7548-4ce5-886a-495c49b561c5 289f872f629dbeb124f2cab43dea3cb5 {"aliquot_tag": "ALQ_294f6dfc", "sample": "S11", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.S11_R2.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R2_001.fastq.gz 4335783692 FASTQ S11_R2 unaligned CPTAC3 dfda38f9-55cf-444f-b70a-8e173508b37f 043b8688380691cb7313b05dd8f131f1 {"aliquot_tag": "ALQ_294f6dfc", "sample": "S11", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.S13_L004_R1.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 6290703955 FASTQ S13_L004_R1 unaligned CPTAC3 a7609db0-2819-4dc0-9988-4a1323d15135 4707ee02fe01df226102dfedb02e04dd {"aliquot_tag": "ALQ_72db155e", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.S13_L004_R2.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 6842240946 FASTQ S13_L004_R2 unaligned CPTAC3 b10f3be4-53ec-4526-96d5-050e3a0eebe7 fc77095ab4a11526e6f8f47405a176fc {"aliquot_tag": "ALQ_72db155e", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.transcriptome.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.transcriptome.gdc_realn.bam 14122899198 BAM transcriptome harmonized CPTAC3 caf7d055-7d4c-4516-a651-e6c294c8e6ac 793f1ef713c0e9c1697e77b862b7dbe8 {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor"} -C3N-00743.RNA-Seq.transcriptome.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.transcriptome.gdc_realn.bam 4333795800 BAM transcriptome harmonized CPTAC3 c1cc08aa-e439-47ae-8efe-30c9bc11dd29 2a486feaafe8f1b94b83a78c4ee3d8e5 {"aliquot_tag": "ALQ_294f6dfc", "gdc_sample_type": "Primary Tumor"} -C3N-00743.WGS.N C3N-00743 UCEC WGS blood_normal CPT0063060002 CPT0063060002.WholeGenome.RP-1303.bam 67426258189 BAM aligned CPTAC3 294659f1-3e67-4645-b3d4-39c93b22212c e930718b56e699025eb80b28a8e191e2 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00743.WGS.N.hg38 C3N-00743 UCEC WGS blood_normal CPT0063060002 5b71b4cf-7f14-42ec-bbe6-58842e3efd3f_gdc_realn.bam 101981112099 BAM harmonized CPTAC3 d062478a-4524-4ba8-b2d6-f50395fcc112 c116ee9850ac75ec3b6fb84b0b9eead0 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00743.WGS.T C3N-00743 UCEC WGS tumor CPT0062940009 CPT0062940009.WholeGenome.RP-1303.bam 78756011146 BAM aligned CPTAC3 91ae7713-8b1c-423a-9c27-f6ade0a04ce7 11c381770b066fe7278cf2ad27ba6f7c {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor"} -C3N-00743.WGS.T.hg38 C3N-00743 UCEC WGS tumor CPT0062940009 fb83df64-bb73-499c-a57a-9436e26aa093_gdc_realn.bam 123559620327 BAM harmonized CPTAC3 7a302498-b5e1-479b-898f-fd7bd524db94 c9f59e8a2f92837d46af100bac3022c8 {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor"} -C3N-00743.WXS.N C3N-00743 UCEC WXS blood_normal CPT0063060002 CPT0063060002.WholeExome.RP-1303.bam 32562596751 BAM aligned CPTAC3 32b28c13-d52e-44cb-8100-d212f1eaaa86 a3bb0314f00b7bbbfc3caae010d9c5e6 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00743.WXS.N.hg38 C3N-00743 UCEC WXS blood_normal CPT0063060002 5b71b4cf-7f14-42ec-bbe6-58842e3efd3f_gdc_realn.bam 44233086274 BAM harmonized CPTAC3 7b479f2e-cccc-475d-84c6-d54ad43a5966 a3355002d4fc19ef2b39b5e4a3058b80 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal"} -C3N-00743.WXS.T C3N-00743 UCEC WXS tumor CPT0062940009 CPT0062940009.WholeExome.RP-1303.bam 46355677299 BAM aligned CPTAC3 7d110913-430e-457f-94e5-e2bd1af6cb90 0fc6287c8a3ba1387a74304b21a48e70 {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor"} -C3N-00743.WXS.T.hg38 C3N-00743 UCEC WXS tumor CPT0062940009 fb83df64-bb73-499c-a57a-9436e26aa093_gdc_realn.bam 63882362886 BAM harmonized CPTAC3 614a8780-9f61-476c-8d81-dbd4f18c0220 efcab2a2790a25c485f571a12192b46c {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor"} -C3N-00750.MethArray.Green.T C3N-00750 UCEC Methylation_Array tumor CPT0265110006 203561620132_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 74beaa0b-dea9-4895-be9f-d6826ea6b6ce defdf64e4a188ecf87a089471b755f81 {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor"} -C3N-00750.MethArray.Red.T C3N-00750 UCEC Methylation_Array tumor CPT0265110006 203561620132_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 c0ea9fc7-b9e0-45bd-80f1-f645b5fbed31 0c60edd9936abbfd6a03869447704599 {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor"} -C3N-00750.miRNA-Seq.S10_L001_R1.T C3N-00750 UCEC miRNA-Seq tumor CPT0265110009 190508_UNC31-K00269_0215_BH7FYKBBXY_TAGCTT_S10_L001_R1_001.unaln.bam 202438751 BAM S10_L001_R1 unaligned CPTAC3 27bb27a9-312d-4034-b420-db39f2b9e801 fc4535813856217de53ca199ce2f9562 {"aliquot_tag": "ALQ_2d8613da", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00750.miRNA-Seq.T.hg38 C3N-00750 UCEC miRNA-Seq tumor CPT0265110009 3916a8ce-6d24-416e-b429-64cfb761e3cd_mirnaseq_gdc_realn.bam 223504697 BAM harmonized CPTAC3 feb68dee-1b33-4b0d-82df-b96a23422841 efc6f37ec560f2d2813f41d6559f6b53 {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.chimeric.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.chimeric.gdc_realn.bam 35878282 BAM chimeric harmonized CPTAC3 72bd5b77-0e3b-41c1-ab03-5221d9723c6c 50b8965431fc795ac8a713438f95ac6e {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.chimeric.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.chimeric.gdc_realn.bam 279812419 BAM chimeric harmonized CPTAC3 862c902c-ef82-451c-aa6c-fcd42bdcaf9e 52604b458cc82f9a2efc7b39790d8923 {"aliquot_tag": "ALQ_ebbd1498", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.genomic.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.genomic.gdc_realn.bam 9265729111 BAM genomic harmonized CPTAC3 accf95b6-24b6-4c45-b0b6-5b6f4664518a 34b30c2bed64126c21d9570e5efe7f3b {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.genomic.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.genomic.gdc_realn.bam 14600195628 BAM genomic harmonized CPTAC3 c53f4c84-8374-4a9e-a8b4-331ee64d522a 1d5f6fb69db6066dd2fe595b0b6d13e0 {"aliquot_tag": "ALQ_ebbd1498", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.S18_L005_R1.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R1_001.fastq.gz 4455470146 FASTQ S18_L005_R1 unaligned CPTAC3 107e045d-80db-4cae-ae65-2d9fd8ed9a37 c37e3ca7e528ea6f7a85e19ab8a4f1c9 {"aliquot_tag": "ALQ_2d8613da", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.S18_L005_R2.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R2_001.fastq.gz 4965615771 FASTQ S18_L005_R2 unaligned CPTAC3 f53a602d-e6ab-4c89-af46-18c369e43fd9 15cb7b4ab88a6e4d134f5ff933c72431 {"aliquot_tag": "ALQ_2d8613da", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.S22_R1.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R1_001.fastq.gz 8555561468 FASTQ S22_R1 unaligned CPTAC3 a45e880b-ae16-452b-b804-ca208328a10f 320bebb8c44a07b3e944a9a0a4d04809 {"aliquot_tag": "ALQ_ebbd1498", "sample": "S22", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.S22_R2.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R2_001.fastq.gz 8874799007 FASTQ S22_R2 unaligned CPTAC3 feacb950-f77b-4e6b-8aba-bb5d6e07ae9f cb8f23778c7f7d631bf66e512f29d8b9 {"aliquot_tag": "ALQ_ebbd1498", "sample": "S22", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.transcriptome.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.transcriptome.gdc_realn.bam 13298999674 BAM transcriptome harmonized CPTAC3 4255281f-842a-4d8a-9280-1e12f6bc8b62 96875250dd1bbd2dfc4278eb11dbfcc0 {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor"} -C3N-00750.RNA-Seq.transcriptome.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.transcriptome.gdc_realn.bam 9707867162 BAM transcriptome harmonized CPTAC3 759aff90-5c21-4b21-b771-1da272cdd741 8a11f16c2158a4a406da6d46d3136263 {"aliquot_tag": "ALQ_ebbd1498", "gdc_sample_type": "Primary Tumor"} -C3N-00750.WGS.N C3N-00750 UCEC WGS blood_normal CPT0264020002 CPT0264020002.WholeGenome.RP-1303.bam 70759765995 BAM aligned CPTAC3 1ae69857-824b-43b4-b35e-ce5f16fa7ab8 2ad79b771809527860b689cc9a7fd2fb {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal"} -C3N-00750.WGS.N.hg38 C3N-00750 UCEC WGS blood_normal CPT0264020002 6b65cbd6-63f7-4874-84de-9b976d0b7719_wgs_gdc_realn.bam 105702267632 BAM harmonized CPTAC3 a00793a7-3546-43bf-8c3f-0c752a8a9d8f 0cf38b0d594706c05eef71fe5747bf21 {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal"} -C3N-00750.WGS.T C3N-00750 UCEC WGS tumor CPT0265110006 CPT0265110006.WholeGenome.RP-1303.bam 75090284608 BAM aligned CPTAC3 189cd0d8-aed4-462f-9f1d-25d9ca182829 c1026cfe1e579bf466c14d2d302f955c {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor"} -C3N-00750.WGS.T.hg38 C3N-00750 UCEC WGS tumor CPT0265110006 c13f008a-2028-44b7-bf94-22ba6ee3e0e7_wgs_gdc_realn.bam 111289296828 BAM harmonized CPTAC3 9b6fb0f0-8515-49f3-ba3e-74ff87e393b3 811a6d058952e5d2910633b77c7b3532 {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor"} -C3N-00750.WXS.N C3N-00750 UCEC WXS blood_normal CPT0264020002 CPT0264020002.WholeExome.RP-1303.bam 27306296823 BAM aligned CPTAC3 86b28bf4-a192-43b2-afb7-e1d768007ed4 94da76776bd2a322de729c1bb4b1974b {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal"} -C3N-00750.WXS.N.hg38 C3N-00750 UCEC WXS blood_normal CPT0264020002 6b65cbd6-63f7-4874-84de-9b976d0b7719_wxs_gdc_realn.bam 38220563385 BAM harmonized CPTAC3 6def37c9-462c-481d-bcb6-c85664a520d0 025e5fed900969762538b3f53f681ebc {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal"} -C3N-00750.WXS.T C3N-00750 UCEC WXS tumor CPT0265110006 CPT0265110006.WholeExome.RP-1303.bam 25407170384 BAM aligned CPTAC3 bd8d9247-f502-4125-ae1b-38bec96d9d61 9390ccb94bcbf43a24b68cc068b88b3c {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor"} -C3N-00750.WXS.T.hg38 C3N-00750 UCEC WXS tumor CPT0265110006 c13f008a-2028-44b7-bf94-22ba6ee3e0e7_wxs_gdc_realn.bam 35655485056 BAM harmonized CPTAC3 eb61406c-201e-4c5f-b8e6-92b93a96680c 1812f5d4bc557e0a0f562c2ad924a6ba {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor"} -C3N-00753.MethArray.Green.T C3N-00753 UCEC Methylation_Array tumor CPT0129640006 203220070100_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f3dd98e5-8ded-4692-86c8-c3d88e8258fc fd44b84d9081c87a084a085c2eb70282 {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor"} -C3N-00753.MethArray.Red.T C3N-00753 UCEC Methylation_Array tumor CPT0129640006 203220070100_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 68f56008-9831-4ee1-be18-b7e30d3452e6 955af45b8bfbeb481ee09b3e35c7f863 {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor"} -C3N-00753.miRNA-Seq.S20_L004_R1.T C3N-00753 UCEC miRNA-Seq tumor CPT0129640009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGGCC_S20_L004_R1_001.unaln.bam 216875172 BAM S20_L004_R1 unaligned CPTAC3 70c7b5e7-0eab-421f-86ed-612ce4c209c5 339941a92410f46ce3dd40324787980b {"aliquot_tag": "ALQ_8204f459", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00753.miRNA-Seq.T.hg38 C3N-00753 UCEC miRNA-Seq tumor CPT0129640009 204e951d-6c75-4687-856b-6460f194697c_mirnaseq_gdc_realn.bam 244274307 BAM harmonized CPTAC3 d80fe401-27a5-42c3-b267-3f8e4bc66da1 e83002e01f37ee96c3d68935efd9f720 {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.chimeric.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.chimeric.gdc_realn.bam 104049847 BAM chimeric harmonized CPTAC3 4bbfde5f-34fc-4e3e-ae87-db11786ba85c 0ed01ded1e2dda096495e10b3020768c {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.chimeric.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.chimeric.gdc_realn.bam 49102898 BAM chimeric harmonized CPTAC3 5ea035db-50a3-4739-bf35-2ab9dc77a2e6 b38cba4a1513f076232b734bd4fa4c39 {"aliquot_tag": "ALQ_492f916a", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.genomic.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.genomic.gdc_realn.bam 9077381414 BAM genomic harmonized CPTAC3 82c25c09-23a3-4df9-b648-2896974bfd2d 7fcfb5af8124c83d33ecda56dff0e729 {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.genomic.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.genomic.gdc_realn.bam 5503520862 BAM genomic harmonized CPTAC3 bc53f6e2-e18b-4c48-a530-557b2be3dbec 550f1f3f91b15c326a2d3052275a03bf {"aliquot_tag": "ALQ_492f916a", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.S15_L005_R1.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R1_001.fastq.gz 3991757824 FASTQ S15_L005_R1 unaligned CPTAC3 24a62044-5b9f-4f12-83e7-ef19d3e94edd d17587a3e9b582ad38d8463966f03e22 {"aliquot_tag": "ALQ_8204f459", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.S15_L005_R2.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R2_001.fastq.gz 4428498913 FASTQ S15_L005_R2 unaligned CPTAC3 2b42b14f-d176-4c12-840e-cf8a57755bd1 afbc9cfd1740a4d25b47c3d37edbe603 {"aliquot_tag": "ALQ_8204f459", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.S23_R1.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R1_001.fastq.gz 2934024253 FASTQ S23_R1 unaligned CPTAC3 7dfc318c-40b8-4d10-8df0-b4745d705e0f bdc9c6135d2bf2850f8f6c7a5d2a34d1 {"aliquot_tag": "ALQ_492f916a", "sample": "S23", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.S23_R2.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R2_001.fastq.gz 3028231506 FASTQ S23_R2 unaligned CPTAC3 30e6eba4-380f-4da8-a254-540f61540ae9 da79c9354f9653d8c37bac307dc23f75 {"aliquot_tag": "ALQ_492f916a", "sample": "S23", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.transcriptome.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.transcriptome.gdc_realn.bam 9933082228 BAM transcriptome harmonized CPTAC3 8fcd2b6d-7ced-492b-bd24-dae4cf1c9dd6 6f21388866dcbee51a46b86306d1e563 {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor"} -C3N-00753.RNA-Seq.transcriptome.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.transcriptome.gdc_realn.bam 2787027058 BAM transcriptome harmonized CPTAC3 1afb82a6-bbe6-4ef8-896d-acb09e988e04 bff90d6d59b5b56fcd61dccc369db402 {"aliquot_tag": "ALQ_492f916a", "gdc_sample_type": "Primary Tumor"} -C3N-00753.WGS.N C3N-00753 UCEC WGS blood_normal CPT0130880002 CPT0130880002.WholeGenome.RP-1303.bam 53554795096 BAM aligned CPTAC3 653efd27-f37d-4770-82d9-e32487eaccb6 920036b0de0150f61aa1350e2fb8e071 {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00753.WGS.N.hg38 C3N-00753 UCEC WGS blood_normal CPT0130880002 6048ef28-8763-4680-8859-98aa1fa77e6d_wgs_gdc_realn.bam 78976989829 BAM harmonized CPTAC3 5da22ef3-4ad9-4f2e-95c9-39579c1314e5 e0974def125fc1f3c57ec036d5fbba92 {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00753.WGS.T C3N-00753 UCEC WGS tumor CPT0129640006 CPT0129640006.WholeGenome.RP-1303.bam 53082823138 BAM aligned CPTAC3 60100289-0fa1-41bc-ad67-03261dadc4e5 c7b13a585ec7e423646d98479e30edfc {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor"} -C3N-00753.WGS.T.hg38 C3N-00753 UCEC WGS tumor CPT0129640006 abe4f89f-a2e9-4e8b-ad13-1b54aeb77d28_wgs_gdc_realn.bam 78509096285 BAM harmonized CPTAC3 6c7e86ea-8dff-4b31-a34a-8d650b90f587 28b46db8d8ad4134ace0ff407504c17e {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor"} -C3N-00753.WXS.N C3N-00753 UCEC WXS blood_normal CPT0130880002 CPT0130880002.WholeExome.RP-1303.bam 26240634578 BAM aligned CPTAC3 679c5e42-9e4c-43ff-a6bc-470c69d744bb c8968c3779bb7de3c7d9be445088670c {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00753.WXS.N.hg38 C3N-00753 UCEC WXS blood_normal CPT0130880002 6048ef28-8763-4680-8859-98aa1fa77e6d_wxs_gdc_realn.bam 36403338657 BAM harmonized CPTAC3 df470964-f417-4dea-a4e0-69876e3a57a7 e086aeb752ba3931720b5f176a6bf8b9 {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-00753.WXS.T C3N-00753 UCEC WXS tumor CPT0129640006 CPT0129640006.WholeExome.RP-1303.bam 25472059774 BAM aligned CPTAC3 c32a3d61-6d9c-48f8-a374-5009a2f1c3d0 f3c94586f99369d6cb6b53f4e90510eb {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor"} -C3N-00753.WXS.T.hg38 C3N-00753 UCEC WXS tumor CPT0129640006 abe4f89f-a2e9-4e8b-ad13-1b54aeb77d28_wxs_gdc_realn.bam 35353335013 BAM harmonized CPTAC3 ad548956-0155-4dc5-aabc-9d3383f31631 1de06b8a5d35316cba1a3e15003a5720 {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor"} -C3N-00755.MethArray.Green.T C3N-00755 UCEC Methylation_Array tumor CPT0129520007 203219670180_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d933123c-2017-439f-80df-e036bb62e1d0 7daa864661720f1f400c81ef67da8561 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor"} -C3N-00755.MethArray.Red.T C3N-00755 UCEC Methylation_Array tumor CPT0129520007 203219670180_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 8f12137a-9c0c-4cc3-bf37-23851c93e4c8 88d5686eb712858268662ca3ad7a131e {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor"} -C3N-00755.miRNA-Seq.S39_L005_R1.T C3N-00755 UCEC miRNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTATAC_S39_L005_R1_001.unaln.bam 257132706 BAM S39_L005_R1 unaligned CPTAC3 8c7256e1-6629-4353-932d-5d97e8cc10ca e1ece2b9460c99f3657f93db04a272d4 {"aliquot_tag": "ALQ_eb17fab2", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00755.miRNA-Seq.T.hg38 C3N-00755 UCEC miRNA-Seq tumor CPT0129520010 d3d92a93-517e-4aca-8b01-ee62438e1cda_mirnaseq_gdc_realn.bam 279480046 BAM harmonized CPTAC3 90319517-f376-47a4-9c8d-c7eee89d8193 8dfd0ef4918c757d480824f98db5c03d {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.chimeric.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.chimeric.gdc_realn.bam 36093888 BAM chimeric harmonized CPTAC3 d41a8e62-4b4c-459a-b16c-3fcb9030234f 303a634b87ddc6cc80c67b92574403a0 {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.chimeric.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.chimeric.gdc_realn.bam 182241164 BAM chimeric harmonized CPTAC3 d197ff5a-1b83-4086-89b5-293fcdb6fffa 5f0f20ca277e207a359177307f6526c8 {"aliquot_tag": "ALQ_708b5da5", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.genomic.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.genomic.gdc_realn.bam 9897478317 BAM genomic harmonized CPTAC3 eab81ffc-e6b2-44ca-aa8e-9722fa58465d 99ba4a00429c528963bb6f708b99ff8a {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.genomic.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.genomic.gdc_realn.bam 10748714942 BAM genomic harmonized CPTAC3 66a24825-e4bc-45ac-b68d-033ef06675a9 aede56ff2136be8c91317389bfdbba61 {"aliquot_tag": "ALQ_708b5da5", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.S17_L005_R1.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4307243615 FASTQ S17_L005_R1 unaligned CPTAC3 0066fe67-28d9-425d-aaca-25e07d3c7a1f d4edf5c61d27ab092cf2057b790203ff {"aliquot_tag": "ALQ_eb17fab2", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.S17_L005_R2.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4444988806 FASTQ S17_L005_R2 unaligned CPTAC3 d71ae3c9-74e9-4b53-ae49-72b0ebdc847e cbc94c8c581684695c4d996913740998 {"aliquot_tag": "ALQ_eb17fab2", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.S54_R1.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R1_001.fastq.gz 6861879550 FASTQ S54_R1 unaligned CPTAC3 5dd45ab8-77fa-4639-bb2a-920b137fdada 30ac77da218859c433da37f6145aaad7 {"aliquot_tag": "ALQ_708b5da5", "sample": "S54", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.S54_R2.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R2_001.fastq.gz 7165484062 FASTQ S54_R2 unaligned CPTAC3 2f81b1d0-c714-4344-a61b-bf544ff2f37f aca96c504b3e3eca7b56443840e3af66 {"aliquot_tag": "ALQ_708b5da5", "sample": "S54", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.transcriptome.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.transcriptome.gdc_realn.bam 9849538258 BAM transcriptome harmonized CPTAC3 d74356b6-3e27-4065-8892-9eacf6b521e2 73085c85eb7f6017f1fbee0ff24ea29b {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor"} -C3N-00755.RNA-Seq.transcriptome.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.transcriptome.gdc_realn.bam 6803385711 BAM transcriptome harmonized CPTAC3 119f76dc-26a3-4991-8fb9-78d006de8b47 2cbf5491bd1bd3b23d5a13f8e1e34c91 {"aliquot_tag": "ALQ_708b5da5", "gdc_sample_type": "Primary Tumor"} -C3N-00755.WGS.N C3N-00755 UCEC WGS blood_normal CPT0130860002 CPT0130860002.WholeGenome.RP-1303.bam 54288114855 BAM aligned CPTAC3 b2856f03-4bd6-42d4-aaca-55b88baf25be d5bcf998c693cbb6a9336f96280cccdd {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00755.WGS.N.hg38 C3N-00755 UCEC WGS blood_normal CPT0130860002 7addbadb-d490-4771-9b90-d1f15f80eae2_wgs_gdc_realn.bam 78513921229 BAM harmonized CPTAC3 23ce58b2-6712-4212-abd4-5227785a62db 9e4b00fb0e28a93e6cd6ddb46624bbda {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00755.WGS.T C3N-00755 UCEC WGS tumor CPT0129520007 CPT0129520007.WholeGenome.RP-1303.bam 61723557374 BAM aligned CPTAC3 9b92c9ac-b1ab-4d34-841e-0290b3cfd4b0 1c18ef8fe77179698a239aea578ae695 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor"} -C3N-00755.WGS.T.hg38 C3N-00755 UCEC WGS tumor CPT0129520007 f66073a0-eed8-4c4a-9bea-bec64143e85f_wgs_gdc_realn.bam 91083612740 BAM harmonized CPTAC3 ff1eef3d-fdad-4513-9baa-6217e5ca3f67 f788a7c3420ea560d767e6912ffb43bb {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor"} -C3N-00755.WXS.N C3N-00755 UCEC WXS blood_normal CPT0130860002 CPT0130860002.WholeExome.RP-1303.bam 23468495532 BAM aligned CPTAC3 bf192af5-43f8-4fb0-a883-89543148007a 8eb78e44ea16c0fd7432c8f70c67d565 {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00755.WXS.N.hg38 C3N-00755 UCEC WXS blood_normal CPT0130860002 7addbadb-d490-4771-9b90-d1f15f80eae2_wxs_gdc_realn.bam 32067076912 BAM harmonized CPTAC3 6c2151b8-4811-490a-a407-a711d18a9915 538bbf56e67305ef259ff31980629b41 {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-00755.WXS.T C3N-00755 UCEC WXS tumor CPT0129520007 CPT0129520007.WholeExome.RP-1303.bam 29262548859 BAM aligned CPTAC3 a5bb098c-a758-48c8-84a2-4332d5d53e66 c367bfe2cde22282c211bab1b7642335 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor"} -C3N-00755.WXS.T.hg38 C3N-00755 UCEC WXS tumor CPT0129520007 f66073a0-eed8-4c4a-9bea-bec64143e85f_wxs_gdc_realn.bam 40261174717 BAM harmonized CPTAC3 b66b98fd-777b-4232-9242-6313d7d18753 c67fe3f93411c6e1f913331cf13e1ea6 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor"} -C3N-00822.MethArray.Green.T C3N-00822 HNSCC Methylation_Array tumor CPT0087820009 202234370120_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e997b289-2512-4644-9c3b-7fcd56addb6a 69740b6d1b7116bb43970d2301e34059 {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor"} -C3N-00822.MethArray.Red.T C3N-00822 HNSCC Methylation_Array tumor CPT0087820009 202234370120_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 a87018cc-0e3d-4281-a1fb-8ef1879e809e fddb211394c9302a0576c0906d6206cb {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor"} -C3N-00822.miRNA-Seq.S25_L002_R1.T C3N-00822 HNSCC miRNA-Seq tumor CPT0087820006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTATAC_S25_L002_R1_001.unaln.bam 286398033 BAM S25_L002_R1 unaligned CPTAC3 f286101a-047d-4b3c-a433-2ee2f65ca210 816ddb41a8ad8366ab81011f64695c27 {"aliquot_tag": "ALQ_71750ece", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00822.miRNA-Seq.T.hg38 C3N-00822 HNSCC miRNA-Seq tumor CPT0087820006 a5bf2760-831c-4f49-9e7e-1df33e2eacc7_mirnaseq_gdc_realn.bam 324377707 BAM harmonized CPTAC3 df88b4c6-8c88-470b-8594-45383d9aa73e e2e852760c21b5eef15dde75bbf229ad {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.chimeric.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.chimeric.gdc_realn.bam 43909671 BAM chimeric harmonized CPTAC3 d872684d-ae3b-48f3-ac81-71f923f9a432 32d45b793170254c7a2f5acbac652b6d {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.chimeric.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.chimeric.gdc_realn.bam 230735291 BAM chimeric harmonized CPTAC3 9ba92479-8056-46d4-8de6-4dc7faee604a 91f8cd4dc577d2e09ac2f020c5a46d88 {"aliquot_tag": "ALQ_fc37568d", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.genomic.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.genomic.gdc_realn.bam 11032450446 BAM genomic harmonized CPTAC3 4c994f0a-6c6e-4452-8957-5d512503860f 0c80ab46d98fbca58cf1f3e66f24aa33 {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.genomic.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.genomic.gdc_realn.bam 13914260519 BAM genomic harmonized CPTAC3 4f8e8e0f-7e70-40ab-996b-85f8f005e127 9a1e3a893d3dc192b68968052a153446 {"aliquot_tag": "ALQ_fc37568d", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.S21_L008_R1.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R1_001.fastq.gz 4201093604 FASTQ S21_L008_R1 unaligned CPTAC3 0301a383-da2d-49b6-93cd-647d466b371f f60a823d5cff06ab6f77f722c581a85e {"aliquot_tag": "ALQ_71750ece", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.S21_L008_R2.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R2_001.fastq.gz 4662070979 FASTQ S21_L008_R2 unaligned CPTAC3 81e003f3-cf09-489b-87eb-323cf1737646 928337966b9650410f43fa6b9fd28cdf {"aliquot_tag": "ALQ_71750ece", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.S36_R1.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R1_001.fastq.gz 8018982990 FASTQ S36_R1 unaligned CPTAC3 a6b52759-1ad2-4131-a5cc-e8a81588e376 d726d6a4f0ecc18cb6ab513ea294fc99 {"aliquot_tag": "ALQ_fc37568d", "sample": "S36", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.S36_R2.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R2_001.fastq.gz 8383519746 FASTQ S36_R2 unaligned CPTAC3 e5b128f4-32b8-4584-9cb3-b29ca487edd8 65296debc08402fa64c0edf1ab3596fa {"aliquot_tag": "ALQ_fc37568d", "sample": "S36", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.transcriptome.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.transcriptome.gdc_realn.bam 10382448303 BAM transcriptome harmonized CPTAC3 958a3976-5753-4dc1-8ec9-8d4605407e8b 298519fa596131f204c516b91118d344 {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor"} -C3N-00822.RNA-Seq.transcriptome.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.transcriptome.gdc_realn.bam 7108562522 BAM transcriptome harmonized CPTAC3 75a736da-7064-4381-8c45-2e7a098ff63c 635ff472fe07bf53b1dd3e65bc5d1bdd {"aliquot_tag": "ALQ_fc37568d", "gdc_sample_type": "Primary Tumor"} -C3N-00822.WGS.N C3N-00822 HNSCC WGS blood_normal CPT0087880002 CPT0087880002.WholeGenome.RP-1303.bam 63513539724 BAM aligned CPTAC3 19230fb5-9bde-4cc8-9992-db89e4fe6c53 187bcd20ee4b1c217efb0d86ad3d1374 {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal"} -C3N-00822.WGS.N.hg38 C3N-00822 HNSCC WGS blood_normal CPT0087880002 e2aaffe0-cd97-4b93-8e61-de5f324f901c_wgs_gdc_realn.bam 93023555279 BAM harmonized CPTAC3 07016237-407b-47ec-bac2-8c0b47ec2217 b058e1f94fe2db824cf62af2776b4c52 {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal"} -C3N-00822.WGS.T C3N-00822 HNSCC WGS tumor CPT0087820009 CPT0087820009.WholeGenome.RP-1303.bam 61090064114 BAM aligned CPTAC3 c0f6d127-d65b-4806-9f63-498b78e37aed 40c9b31f7e90a51d13c938ce427e50eb {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor"} -C3N-00822.WGS.T.hg38 C3N-00822 HNSCC WGS tumor CPT0087820009 4114196f-7a4a-4bca-acf8-d8829c639934_wgs_gdc_realn.bam 91725919612 BAM harmonized CPTAC3 acb58809-b6e0-4fce-bb66-d1cfce8975ef b398388abe734039233ea74cd2a18da8 {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor"} -C3N-00822.WXS.N C3N-00822 HNSCC WXS blood_normal CPT0087880002 CPT0087880002.WholeExome.RP-1303.bam 32354650367 BAM aligned CPTAC3 5e7c9a95-0af8-44f6-bc5b-e52dd827ccd8 d84b0d12e7d47a559d87aab260ebf39a {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal"} -C3N-00822.WXS.N.hg38 C3N-00822 HNSCC WXS blood_normal CPT0087880002 e2aaffe0-cd97-4b93-8e61-de5f324f901c_wxs_gdc_realn.bam 44256457633 BAM harmonized CPTAC3 397a73ac-71d1-4975-bf7f-af4b2c4f9d11 ee4a711827b21eaebc929560f8dd84af {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal"} -C3N-00822.WXS.T C3N-00822 HNSCC WXS tumor CPT0087820009 CPT0087820009.WholeExome.RP-1303.bam 31151026113 BAM aligned CPTAC3 4458b121-63f3-48b8-ae9c-c93a7d775541 111e598792992cd5442062688e5dabe9 {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor"} -C3N-00822.WXS.T.hg38 C3N-00822 HNSCC WXS tumor CPT0087820009 4114196f-7a4a-4bca-acf8-d8829c639934_wxs_gdc_realn.bam 42532173149 BAM harmonized CPTAC3 a4b184bb-1d90-4f32-b16f-6bde08fcaf6b c01e45d9dfc8cc9e9bc881d025038e3b {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor"} -C3N-00825.MethArray.Green.T C3N-00825 HNSCC Methylation_Array tumor CPT0094280010 202234380094_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 e557e369-ed7a-4f8a-8353-5583ae455f7f be7f322e9382aecbc50d3e1fa20e12f9 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor"} -C3N-00825.MethArray.Red.T C3N-00825 HNSCC Methylation_Array tumor CPT0094280010 202234380094_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 b40da398-b2e2-4441-8512-3f29806a22de 2f20cb963ecc6845a7c0297de1b1e183 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor"} -C3N-00825.miRNA-Seq.S35_L007_R1.T C3N-00825 HNSCC miRNA-Seq tumor CPT0094280007 180828_UNC32-K00270_0112_AHWTLNBBXX_CAACTA_S35_L007_R1_001.unaln.bam 229966370 BAM S35_L007_R1 unaligned CPTAC3 1687253f-8a1a-4041-9382-b6e7f17ccf3d 5458a6f559a665b47d93a1ea50bc36b8 {"aliquot_tag": "ALQ_101b1f9c", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00825.miRNA-Seq.T.hg38 C3N-00825 HNSCC miRNA-Seq tumor CPT0094280007 73ad72e3-88fa-49f4-86ed-ce0823b7c590_mirnaseq_gdc_realn.bam 252902109 BAM harmonized CPTAC3 7a536e33-a545-454c-9d31-5215805377c5 917b9be818504fde29cf001dd0851bfa {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.chimeric.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.chimeric.gdc_realn.bam 41378396 BAM chimeric harmonized CPTAC3 4e103405-782c-43a1-8f49-c1c2486631d1 7ac352554bcebd6191513225e51d7acd {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.chimeric.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.chimeric.gdc_realn.bam 145958620 BAM chimeric harmonized CPTAC3 d52ba916-373a-4ba5-9aaa-b6ebf1320dee 94bcb8604cb016d73b3af600c8654c46 {"aliquot_tag": "ALQ_96e25724", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.genomic.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.genomic.gdc_realn.bam 9322692093 BAM genomic harmonized CPTAC3 46470433-1632-4d3d-b477-a4297f600127 6a69c30205cdec0c073ec46a77dc4b9e {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.genomic.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.genomic.gdc_realn.bam 7523828078 BAM genomic harmonized CPTAC3 dd024423-f0ca-4cd0-b543-68c530f1f15e d900f7f84c53ddf69d8903d383ea2c0c {"aliquot_tag": "ALQ_96e25724", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.S42_R1.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R1_001.fastq.gz 4291323722 FASTQ S42_R1 unaligned CPTAC3 a20072a8-fd7a-4ba4-b9f3-82048e73dc46 205b1fd8644686d6fed9663f146d68e6 {"aliquot_tag": "ALQ_96e25724", "sample": "S42", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.S42_R2.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R2_001.fastq.gz 4429670599 FASTQ S42_R2 unaligned CPTAC3 4edef0a6-fd5a-48f3-92ea-a74fd2acae33 3b6e1f32967666ea9e5732fe814b7ec1 {"aliquot_tag": "ALQ_96e25724", "sample": "S42", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.S5_L003_R1.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R1_001.fastq.gz 4033477916 FASTQ S5_L003_R1 unaligned CPTAC3 fec68aaa-b9e0-4959-bc51-76f6ecdcc4b7 13b129c700a02ada4d91e35c8f0f0d22 {"aliquot_tag": "ALQ_101b1f9c", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.S5_L003_R2.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R2_001.fastq.gz 4409765570 FASTQ S5_L003_R2 unaligned CPTAC3 00992899-0948-473e-99dc-8ef0730087a6 78446d6458206dbf9c28ca6d8fadc7b7 {"aliquot_tag": "ALQ_101b1f9c", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.transcriptome.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.transcriptome.gdc_realn.bam 11378185713 BAM transcriptome harmonized CPTAC3 57b3840e-165c-417e-b604-c1e1d7280026 1ee258fd39339ade7bb7058a552ee19a {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor"} -C3N-00825.RNA-Seq.transcriptome.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.transcriptome.gdc_realn.bam 5807482319 BAM transcriptome harmonized CPTAC3 cdd25743-4ec1-431c-bb48-e8018903f6d8 eaea6121d9b2dde77f88950fb67ea33d {"aliquot_tag": "ALQ_96e25724", "gdc_sample_type": "Primary Tumor"} -C3N-00825.WGS.N C3N-00825 HNSCC WGS blood_normal CPT0094340002 CPT0094340002.WholeGenome.RP-1303.bam 68523444995 BAM aligned CPTAC3 315633b1-e3ed-440b-8af2-183edc15fe43 fe90cfaefec664a3ef4f4cce4cc7852c {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00825.WGS.N.hg38 C3N-00825 HNSCC WGS blood_normal CPT0094340002 052c318a-0d9e-4bea-97b1-7f8bab5866f7_wgs_gdc_realn.bam 101073711752 BAM harmonized CPTAC3 5e0a1c4c-c474-4682-8366-28c24fa656fc 2fc2fb64dd48d4ae0001e355caecc902 {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00825.WGS.T C3N-00825 HNSCC WGS tumor CPT0094280010 CPT0094280010.WholeGenome.RP-1303.bam 65472001467 BAM aligned CPTAC3 c6ccb016-32d3-485b-9129-280b4604b42e 275d640beeff25445618fb90d8fae42b {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor"} -C3N-00825.WGS.T.hg38 C3N-00825 HNSCC WGS tumor CPT0094280010 9a3c5972-f65d-434b-a425-b815f5c1ade7_wgs_gdc_realn.bam 96050295332 BAM harmonized CPTAC3 c0f7dc08-3d4a-4f13-a765-7960ce3c933f 1d01290ff44a78485a9fe526a5c7dce6 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor"} -C3N-00825.WXS.N C3N-00825 HNSCC WXS blood_normal CPT0094340002 CPT0094340002.WholeExome.RP-1303.bam 32626713355 BAM aligned CPTAC3 1aa3a989-cefc-4bd4-948f-7a5b24f80561 26b3dce6d447bfbbcbd52d3e2ea1a9ed {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00825.WXS.N.hg38 C3N-00825 HNSCC WXS blood_normal CPT0094340002 052c318a-0d9e-4bea-97b1-7f8bab5866f7_wxs_gdc_realn.bam 44213676914 BAM harmonized CPTAC3 318a7c21-57fa-45cb-90c0-d9e37bdbbb00 987a837fa13656541ca4ca32c1b35a1c {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00825.WXS.T C3N-00825 HNSCC WXS tumor CPT0094280010 CPT0094280010.WholeExome.RP-1303.bam 36307109803 BAM aligned CPTAC3 e3886fd3-dbe9-4ad9-851f-6d006ecd6044 634c81c8859449e7429e6b4225ede125 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor"} -C3N-00825.WXS.T.hg38 C3N-00825 HNSCC WXS tumor CPT0094280010 9a3c5972-f65d-434b-a425-b815f5c1ade7_wxs_gdc_realn.bam 49958441898 BAM harmonized CPTAC3 e3ce27a4-2fec-4cb0-acbe-06cb88f84bd7 2bf8c23b23a3bc1b594fb00590a32041 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor"} -C3N-00828.MethArray.Green.T C3N-00828 HNSCC Methylation_Array tumor CPT0013130009 202178770143_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 cc44f42e-acfb-4f61-8043-b1158d75271b bb64b903e6e74de38679e408dc0fcf83 {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor"} -C3N-00828.MethArray.Red.T C3N-00828 HNSCC Methylation_Array tumor CPT0013130009 202178770143_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 f74a1906-54fb-4e7d-8c98-b32324a42596 bec0a9bf17d1f90c98d5d0fd16fe1d12 {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor"} -C3N-00828.miRNA-Seq.S40_L002_R1.T C3N-00828 HNSCC miRNA-Seq tumor CPT0013130006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACGAT_S40_L002_R1_001.unaln.bam 176350387 BAM S40_L002_R1 unaligned CPTAC3 0cc2e7bb-5623-4f4a-b26e-8502e3ccb209 5363cf42241d8c5651ef304e83da1214 {"aliquot_tag": "ALQ_801a498e", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00828.miRNA-Seq.T.hg38 C3N-00828 HNSCC miRNA-Seq tumor CPT0013130006 a8395f44-31fd-4eb5-a1e1-7e03d39e8804_mirnaseq_gdc_realn.bam 194356167 BAM harmonized CPTAC3 b25bbb91-e985-4354-9f0a-eb9de5c064b7 6c3ec6fc1d6a8b9e29df748f5a5b43d2 {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor"} -C3N-00828.RNA-Seq.chimeric.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.chimeric.gdc_realn.bam 60224941 BAM chimeric harmonized CPTAC3 4b79882a-b828-4733-9baf-72b63dfa5061 617e394c3f0b3e1d6040017b6559e4b8 {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor"} -C3N-00828.RNA-Seq.genomic.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.genomic.gdc_realn.bam 8354386266 BAM genomic harmonized CPTAC3 e3e6e08f-4154-41be-a0c1-8d12bccb72b0 584369e98418e2ddded00078a28749f5 {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor"} -C3N-00828.RNA-Seq.S2_L006_R1.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R1_001.fastq.gz 3541810555 FASTQ S2_L006_R1 unaligned CPTAC3 4995c0b0-d037-4ebe-b8fb-9a70591542be 6ea3fffc4c381bb50e3b928b2463681d {"aliquot_tag": "ALQ_801a498e", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00828.RNA-Seq.S2_L006_R2.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R2_001.fastq.gz 3860601150 FASTQ S2_L006_R2 unaligned CPTAC3 624fcdb8-e2ba-48b5-91f6-7c2c2447fc0b 2515f3f2c321a9c4d9ec7a509d45a428 {"aliquot_tag": "ALQ_801a498e", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00828.RNA-Seq.transcriptome.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.transcriptome.gdc_realn.bam 9169814363 BAM transcriptome harmonized CPTAC3 ecdfa919-dded-4699-a2ef-f63b7b1f89bf bab1eb3a7fe443ab14ee00818d2c5dad {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor"} -C3N-00828.WGS.N C3N-00828 HNSCC WGS blood_normal CPT0013200002 CPT0013200002.WholeGenome.RP-1303.bam 60644745059 BAM aligned CPTAC3 5e758814-7ab3-421d-b9b7-ca30393d1a81 86503cf2194c54adc8ea0f61ecca3915 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00828.WGS.N.hg38 C3N-00828 HNSCC WGS blood_normal CPT0013200002 07d2af8c-bf1c-41a4-927d-502e45817b7f_gdc_realn.bam 89624454199 BAM harmonized CPTAC3 425396fe-ddf8-4150-a043-681f8f3c6ea2 fe98551acf1b274d230ba2f4d7557307 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00828.WGS.T C3N-00828 HNSCC WGS tumor CPT0013130009 CPT0013130009.WholeGenome.RP-1303.bam 78736815725 BAM aligned CPTAC3 9298184d-d31b-46ac-814a-d42e75d378f0 6e533f7d973d11d920d69d28365e427d {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor"} -C3N-00828.WGS.T.hg38 C3N-00828 HNSCC WGS tumor CPT0013130009 ed761409-25ad-4f1c-997f-3b348bdb829e_gdc_realn.bam 117169090906 BAM harmonized CPTAC3 c8b07aee-a360-47a9-b658-df495b1e50e1 75b6d4c70ce4455fb0a50de4c7fab48b {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor"} -C3N-00828.WXS.N C3N-00828 HNSCC WXS blood_normal CPT0013200002 CPT0013200002.WholeExome.RP-1303.bam 30429833201 BAM aligned CPTAC3 d841b0aa-4804-4904-ac8f-8e0bc185fc7f 7f026e0def6ff3b86d3e364497b6e9e3 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00828.WXS.N.hg38 C3N-00828 HNSCC WXS blood_normal CPT0013200002 07d2af8c-bf1c-41a4-927d-502e45817b7f_gdc_realn.bam 41350047760 BAM harmonized CPTAC3 9fe8169a-d238-410d-9b42-faad8b950bad bf9ae34e3814c0f907c29bc754344128 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00828.WXS.T C3N-00828 HNSCC WXS tumor CPT0013130009 CPT0013130009.WholeExome.RP-1303.bam 39574960135 BAM aligned CPTAC3 a89448da-6504-4154-8ffd-0516bf1f4e48 c27496fb98a0c05fc10d99f1761f066b {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor"} -C3N-00828.WXS.T.hg38 C3N-00828 HNSCC WXS tumor CPT0013130009 ed761409-25ad-4f1c-997f-3b348bdb829e_gdc_realn.bam 54472832381 BAM harmonized CPTAC3 954bfdf8-a70d-430a-a368-7cb0d60b7c62 4a1d9a093b48b854187a687c9e10ebe1 {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor"} -C3N-00829.MethArray.Green.T C3N-00829 HNSCC Methylation_Array tumor CPT0013210010 202234380064_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8e821756-58b4-4452-a7cd-e1dde4297f68 905cc0d345bebaa619cee2786625ec66 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor"} -C3N-00829.MethArray.Red.T C3N-00829 HNSCC Methylation_Array tumor CPT0013210010 202234380064_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 4eb4f13f-f088-446d-9263-b840011ad315 c3e381131b750759bac3c3e8696d68e2 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor"} -C3N-00829.miRNA-Seq.S28_L008_R1.T C3N-00829 HNSCC miRNA-Seq tumor CPT0013210007 180724_UNC32-K00270_0106_BHWK3MBBXX_TGACCA_S28_L008_R1_001.unaln.bam 283732618 BAM S28_L008_R1 unaligned CPTAC3 d3777ec2-723b-4dd9-81b2-d97c15da0ee9 b60c84c94e3c2fc08e70385c8be08e73 {"aliquot_tag": "ALQ_b4958d6", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00829.miRNA-Seq.T.hg38 C3N-00829 HNSCC miRNA-Seq tumor CPT0013210007 86cdb3cb-d894-4c5e-8736-67fb5d92a0e0_mirnaseq_gdc_realn.bam 309384381 BAM harmonized CPTAC3 1f8c8d67-6062-420e-b1df-7ca53e3a18b6 255786c828a422a2368e7575d2fc230d {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor"} -C3N-00829.RNA-Seq.chimeric.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.chimeric.gdc_realn.bam 66790963 BAM chimeric harmonized CPTAC3 0d643419-1bf6-41d7-a947-66ebba295235 321fd48ebc8aaa4449d76e6eb42bd921 {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor"} -C3N-00829.RNA-Seq.genomic.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.genomic.gdc_realn.bam 8975962235 BAM genomic harmonized CPTAC3 ce32122e-68cc-4e75-84e4-01bebb055de0 a5b8e05d122a382b819be6558edb9633 {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor"} -C3N-00829.RNA-Seq.S19_L005_R1.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R1_001.fastq.gz 4069137121 FASTQ S19_L005_R1 unaligned CPTAC3 99d99cc0-1b40-42c5-9cc3-020797d18fbd 444776af8e3837bb14c0668130a73573 {"aliquot_tag": "ALQ_b4958d6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00829.RNA-Seq.S19_L005_R2.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R2_001.fastq.gz 4358176678 FASTQ S19_L005_R2 unaligned CPTAC3 a730c04d-450d-4afd-bde8-bd21af872055 3a2532894b224554db053c911f9b6d1d {"aliquot_tag": "ALQ_b4958d6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00829.RNA-Seq.transcriptome.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.transcriptome.gdc_realn.bam 10561486905 BAM transcriptome harmonized CPTAC3 6e775b7a-a660-4ce4-a6cb-b549b73a482c 2131427e28de9c992ca4b2494f5a3b04 {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor"} -C3N-00829.WGS.N C3N-00829 HNSCC WGS blood_normal CPT0013310002 CPT0013310002.WholeGenome.RP-1303.bam 54397732507 BAM aligned CPTAC3 6f7c88cf-da1e-4332-b875-3b34ac32df2e 62f51b3182a021150d132c1b709ea93a {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00829.WGS.N.hg38 C3N-00829 HNSCC WGS blood_normal CPT0013310002 c3576999-35ec-48bd-8bbb-e03d03660efa_wgs_gdc_realn.bam 80682174718 BAM harmonized CPTAC3 2ef8a5c4-2c2e-4908-ab76-bd1c1baa1010 6efec95009daf5c65e45875d91e170ee {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00829.WGS.T C3N-00829 HNSCC WGS tumor CPT0013210010 CPT0013210010.WholeGenome.RP-1303.bam 61186775033 BAM aligned CPTAC3 46dd8190-403c-494b-ac2d-e897496f81ab a1cea06ea7d2b0a37d9a729164c2e555 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor"} -C3N-00829.WGS.T.hg38 C3N-00829 HNSCC WGS tumor CPT0013210010 6a6a44ad-49df-4f70-84d3-353ffd1e0241_wgs_gdc_realn.bam 91214568959 BAM harmonized CPTAC3 845de231-5f71-4197-83aa-68769f692ccc fb1d1d78c42a3a1e65c82a26b5060c22 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor"} -C3N-00829.WXS.N C3N-00829 HNSCC WXS blood_normal CPT0013310002 CPT0013310002.WholeExome.RP-1303.bam 40328907362 BAM aligned CPTAC3 8653e166-a09d-4e06-9bd3-4276fe61b2c9 1d2ac7c78b93c47ebdb65acf5e779eb0 {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00829.WXS.N.hg38 C3N-00829 HNSCC WXS blood_normal CPT0013310002 c3576999-35ec-48bd-8bbb-e03d03660efa_wxs_gdc_realn.bam 54185719854 BAM harmonized CPTAC3 c7cdfe37-ab47-4f61-aa5f-ddcc3a63694b 4ff54c340c5b274597a37d9250f6531c {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00829.WXS.T C3N-00829 HNSCC WXS tumor CPT0013210010 CPT0013210010.WholeExome.RP-1303.bam 37583131325 BAM aligned CPTAC3 2c2ef1ee-e90a-4a28-b28a-fbce28af1a37 390995bacbf3b35436836a77081b2019 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor"} -C3N-00829.WXS.T.hg38 C3N-00829 HNSCC WXS tumor CPT0013210010 6a6a44ad-49df-4f70-84d3-353ffd1e0241_wxs_gdc_realn.bam 52482670344 BAM harmonized CPTAC3 fc0b12a8-0396-40b5-97c7-5c9d90b3edca 19c66dd88549f17cd5ca43fd7ae55a7a {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor"} -C3N-00831.MethArray.Green.A C3N-00831 CCRCC Methylation_Array tissue_normal CPT0089040009 204930630084_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0dbc8e99-fbcc-4cc9-90e2-fd34d15f3ef0 fdaccbdf82da4cc58322c4571642286f {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.MethArray.Green.T C3N-00831 CCRCC Methylation_Array tumor CPT0089020009 202176300001_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 26b20a3e-4688-4f1c-bd86-f80fbe144db4 a2a7acf8409fbf8f912cabd947635eb5 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor"} -C3N-00831.MethArray.Red.A C3N-00831 CCRCC Methylation_Array tissue_normal CPT0089040009 204930630084_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 4598c21c-784f-4641-884b-254bc4dc2dc6 e9d7a6d60d0dc268b73353d283186d83 {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.MethArray.Red.T C3N-00831 CCRCC Methylation_Array tumor CPT0089020009 202176300001_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 810625c5-c63e-48ff-9b5f-59c4e6f3959a 3977f751be18ddde74fc62bf7deeabfc {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor"} -C3N-00831.miRNA-Seq.A.hg38 C3N-00831 CCRCC miRNA-Seq tissue_normal CPT0089040006 7d047482-7d7e-4e5d-805b-6509222088d7_mirnaseq_gdc_realn.bam 208037007 BAM harmonized CPTAC3 b3acc716-aa41-408b-a58e-fd35991d7308 120c4816d113190c5afe97c05639ab40 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.miRNA-Seq.S19_L006_R1.T C3N-00831 CCRCC miRNA-Seq tumor CPT0089020006 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L006_R1_001.unaln.bam 217285434 BAM S19_L006_R1 unaligned CPTAC3 77ddf494-8a23-44cb-ba2f-57eca813c0f9 e8244e2174768ba6ad0c30c436419a56 {"aliquot_tag": "ALQ_cd19f7fe", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00831.miRNA-Seq.S45_L002_R1.A C3N-00831 CCRCC miRNA-Seq tissue_normal CPT0089040006 181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L002_R1_001.unaln.bam 185831721 BAM S45_L002_R1 unaligned CPTAC3 e240de36-001e-4cc6-844f-55104d16a839 a2b0a72af3ef85994aac8b59ddea48b1 {"aliquot_tag": "ALQ_4259025e", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.miRNA-Seq.T.hg38 C3N-00831 CCRCC miRNA-Seq tumor CPT0089020006 caf46473-127c-4dd0-8f94-c979f7de76e3_mirnaseq_gdc_realn.bam 240737952 BAM harmonized CPTAC3 a1c1a986-ab21-4cc9-baf8-101e44d24c32 3d31487fbdf99b5ce8e9895881ae7daf {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor"} -C3N-00831.RNA-Seq.chimeric.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.chimeric.gdc_realn.bam 35876312 BAM chimeric harmonized CPTAC3 7463e6f0-221d-426b-97d5-6163510bace5 85bd7f5748ac069e1cc9acad4ae18467 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.RNA-Seq.chimeric.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.chimeric.gdc_realn.bam 32928633 BAM chimeric harmonized CPTAC3 aa2a895a-5bfe-4905-8c73-3de44bcd3a86 e526ce117bd22780be5f6285c0c7890e {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor"} -C3N-00831.RNA-Seq.genomic.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.genomic.gdc_realn.bam 6096304171 BAM genomic harmonized CPTAC3 bd38e560-ad28-4c74-8099-a7c3425f0802 e53442c4debe262809031431acdd5c90 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.RNA-Seq.genomic.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.genomic.gdc_realn.bam 8598876759 BAM genomic harmonized CPTAC3 f25cb6a1-958e-4d57-ac90-38108c092895 de6a828c24af29d9cc9155a468e7bbaf {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor"} -C3N-00831.RNA-Seq.S13_L004_R1.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R1_001.fastq.gz 3025483108 FASTQ S13_L004_R1 unaligned CPTAC3 70c6f7d5-8093-4ef4-83e2-c4c159d37302 560c0dd42dd46a3d3bc2cdf3c072d1e5 {"aliquot_tag": "ALQ_4259025e", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.RNA-Seq.S13_L004_R2.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R2_001.fastq.gz 3253754740 FASTQ S13_L004_R2 unaligned CPTAC3 21442031-237f-4ef0-8ca5-9b74b06b603b 51a22852d499e8a235b968d1977a669f {"aliquot_tag": "ALQ_4259025e", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.RNA-Seq.S16_L004_R1.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R1_001.fastq.gz 4264066138 FASTQ S16_L004_R1 unaligned CPTAC3 75651231-85e8-42cc-a674-bec7fc8fda14 94dfbacbe29ea4b18b050e882ed22cb7 {"aliquot_tag": "ALQ_cd19f7fe", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00831.RNA-Seq.S16_L004_R2.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R2_001.fastq.gz 4700279872 FASTQ S16_L004_R2 unaligned CPTAC3 939be026-0a90-4585-8a24-b7c83c09d7fb b2e7ed149c2118943593fe61d9a27dc2 {"aliquot_tag": "ALQ_cd19f7fe", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00831.RNA-Seq.transcriptome.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.transcriptome.gdc_realn.bam 8020472844 BAM transcriptome harmonized CPTAC3 07e2d924-bb8c-471a-95af-45124ffece30 13ebcf715a33dafa9e8892a736ef69c1 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.RNA-Seq.transcriptome.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.transcriptome.gdc_realn.bam 12118656226 BAM transcriptome harmonized CPTAC3 4cadf4b8-9de3-43f0-a091-eb7f4aca9282 70bd69c22e66059c4a6dbaa629035f29 {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor"} -C3N-00831.WGS.A C3N-00831 CCRCC WGS tissue_normal CPT0089040009 CPT0089040009.WholeGenome.RP-1303.bam 63266517496 BAM aligned CPTAC3 f2d91634-949a-42b6-8945-f25d8e6e2351 0b76934b1f34031a767a1bd9a9c937bf {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.WGS.A.hg38 C3N-00831 CCRCC WGS tissue_normal CPT0089040009 41651bab-dc0e-4e96-bd48-64609ca45ae2_wgs_gdc_realn.bam 91622950283 BAM harmonized CPTAC3 3da53ada-8a8e-4e35-bfa3-fd77fd0e8d5c c46655faa20131f6f5463b77b00f1796 {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.WGS.N C3N-00831 CCRCC WGS blood_normal CPT0089080002 CPT0089080002.WholeGenome.RP-1303.bam 63963629061 BAM aligned CPTAC3 d5ec73e5-27d5-4afb-85c2-a7ff6199007d 301dcce0f3e18fa9a1c3b3bcba390466 {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal"} -C3N-00831.WGS.N.hg38 C3N-00831 CCRCC WGS blood_normal CPT0089080002 8ef6b5d5-6f58-45b8-86d6-30d84fa2cbcd_gdc_realn.bam 96486364210 BAM harmonized CPTAC3 70c5b92d-c293-45a9-a6c2-275b71edc6e6 eac15e9a998fbe353deec8177b95697b {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal"} -C3N-00831.WGS.T C3N-00831 CCRCC WGS tumor CPT0089020009 CPT0089020009.WholeGenome.RP-1303.bam 72453045404 BAM aligned CPTAC3 7daf26e5-fe35-4abe-9f99-553da8a72519 4ec24b28e49d48872d160a4c2b842b54 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor"} -C3N-00831.WGS.T.hg38 C3N-00831 CCRCC WGS tumor CPT0089020009 bfee5a43-05c8-4d10-a45b-6cf890d9f5ea_gdc_realn.bam 110634408439 BAM harmonized CPTAC3 7c015bd8-c842-489c-b0bb-8bf06ad50050 65891563e6f76c5d06701efa70fa0ef6 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor"} -C3N-00831.WXS.A C3N-00831 CCRCC WXS tissue_normal CPT0089040009 CPT0089040009.WholeExome.RP-1303.bam 28182251029 BAM aligned CPTAC3 3a3e86dc-4613-45c6-b01c-3682ec6f762a 0f4ecf17c4a2ea7bb23685438c68e142 {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.WXS.A.hg38 C3N-00831 CCRCC WXS tissue_normal CPT0089040009 41651bab-dc0e-4e96-bd48-64609ca45ae2_wxs_gdc_realn.bam 37937700744 BAM harmonized CPTAC3 c87cce34-78ca-4a91-aa5e-5ffc810703eb 8e5b1a33f0758c5e67c7a5a95451eddc {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00831.WXS.N C3N-00831 CCRCC WXS blood_normal CPT0089080002 CPT0089080002.WholeExome.RP-1303.bam 35368323331 BAM aligned CPTAC3 80be5c43-0c84-46ac-b07d-82cddaeac9e7 8a1ff86b9a0e653c792cdc43ff4ca39d {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal"} -C3N-00831.WXS.N.hg38 C3N-00831 CCRCC WXS blood_normal CPT0089080002 8ef6b5d5-6f58-45b8-86d6-30d84fa2cbcd_gdc_realn.bam 47891996068 BAM harmonized CPTAC3 82e31ca9-aff8-48a1-af9a-a91da570614a 5a6325e4062958808fdce676d2c7cdb6 {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal"} -C3N-00831.WXS.T C3N-00831 CCRCC WXS tumor CPT0089020009 CPT0089020009.WholeExome.RP-1303.bam 30434715131 BAM aligned CPTAC3 a249ae01-b2fa-4435-87a2-ec8abade97bb d8e91dc7941c24d64e0863425b9d8ef2 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor"} -C3N-00831.WXS.T.hg38 C3N-00831 CCRCC WXS tumor CPT0089020009 bfee5a43-05c8-4d10-a45b-6cf890d9f5ea_gdc_realn.bam 41878250213 BAM harmonized CPTAC3 46a0f055-7bb5-4cd4-943c-d47e613c935c 1ccf3ffb8be9dea711666a371bcda23b {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor"} -C3N-00832.MethArray.Green.T C3N-00832 CCRCC Methylation_Array tumor CPT0078800009 202184900128_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8086ab35-1a04-44cf-944d-d69c91c6c9a2 152efe84e728450e6078879d14da40e0 {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor"} -C3N-00832.MethArray.Red.T C3N-00832 CCRCC Methylation_Array tumor CPT0078800009 202184900128_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 6d52999c-e49f-49e7-9f83-4769cfef44fb db6137dbe3f591c8a59065ccae906cbc {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor"} -C3N-00832.miRNA-Seq.S17_L008_R1.T C3N-00832 CCRCC miRNA-Seq tumor CPT0078800006 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L008_R1_001.unaln.bam 225468813 BAM S17_L008_R1 unaligned CPTAC3 211ed18f-49c5-4570-9444-528cf78d20cc fcf67e9b08c8312d1c0cf46e8d1edb34 {"aliquot_tag": "ALQ_24dd3feb", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00832.miRNA-Seq.T.hg38 C3N-00832 CCRCC miRNA-Seq tumor CPT0078800006 a8e3f8fb-6dd5-4600-adcd-612f69e9af2b_mirnaseq_gdc_realn.bam 248993644 BAM harmonized CPTAC3 00ae5e98-5d0e-4f3a-a6ce-c182056e32b5 875ad6fbab578cbf4ae4678aff3de299 {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor"} -C3N-00832.RNA-Seq.chimeric.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.chimeric.gdc_realn.bam 166670744 BAM chimeric harmonized CPTAC3 d4475369-bf7e-4a08-98b7-7cb279e732c6 28de0e59c78b8be3f34d8b9f8c4cee1c {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor"} -C3N-00832.RNA-Seq.genomic.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.genomic.gdc_realn.bam 7197046682 BAM genomic harmonized CPTAC3 35c6646b-eee0-434a-a799-b2b955ce72d5 5da326f6390567df37526f30dd7e42e3 {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor"} -C3N-00832.RNA-Seq.S6_L002_R1.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R1_001.fastq.gz 3711792225 FASTQ S6_L002_R1 unaligned CPTAC3 4db2c00d-d95a-4bf3-99cc-a877881e4293 1a33480767fb018dca2922573ca4bc77 {"aliquot_tag": "ALQ_24dd3feb", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00832.RNA-Seq.S6_L002_R2.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R2_001.fastq.gz 3875699142 FASTQ S6_L002_R2 unaligned CPTAC3 56707d27-a982-41f5-8436-0831ec5cbbfa 5076acbf715bfa1a54aae09145592081 {"aliquot_tag": "ALQ_24dd3feb", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00832.RNA-Seq.transcriptome.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.transcriptome.gdc_realn.bam 10854837740 BAM transcriptome harmonized CPTAC3 3af562c2-8523-4873-9cd0-5161675ab403 e541b6b8683f53800789f7479093dedc {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor"} -C3N-00832.WGS.N C3N-00832 CCRCC WGS blood_normal CPT0078820002 CPT0078820002.WholeGenome.RP-1303.bam 65830043608 BAM aligned CPTAC3 6a95bfb0-64f5-46cc-8b6a-588ddc8bcfbd 30d12620ea5123628f0139237e6c3990 {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal"} -C3N-00832.WGS.N.hg38 C3N-00832 CCRCC WGS blood_normal CPT0078820002 bfa631c6-91ae-44c0-b4c2-9841b9a66bd6_gdc_realn.bam 99357716545 BAM harmonized CPTAC3 f99c3235-1610-4f9d-bf68-7eb867d3b099 b6932f23951034630624c874c97c7fdb {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal"} -C3N-00832.WGS.T C3N-00832 CCRCC WGS tumor CPT0078800009 CPT0078800009.WholeGenome.RP-1303.bam 68344556135 BAM aligned CPTAC3 cac34775-dd39-4495-9456-ef2556d8ad9c 13c2f41c80cc60403278b71aefeaea4b {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor"} -C3N-00832.WGS.T.hg38 C3N-00832 CCRCC WGS tumor CPT0078800009 80e53432-49f8-423b-b1ec-c3e7c2aa2a38_gdc_realn.bam 101051041532 BAM harmonized CPTAC3 4bfc2974-3e15-460e-8add-6666df405979 8e2eb3a5bb17329338118ba7bd05a31b {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor"} -C3N-00832.WXS.N C3N-00832 CCRCC WXS blood_normal CPT0078820002 CPT0078820002.WholeExome.RP-1303.bam 29002477932 BAM aligned CPTAC3 573f820c-6bec-4e10-925b-d9a78b7af1f8 ddfe7c7be7de025939c5def4cae3bc58 {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal"} -C3N-00832.WXS.N.hg38 C3N-00832 CCRCC WXS blood_normal CPT0078820002 bfa631c6-91ae-44c0-b4c2-9841b9a66bd6_gdc_realn.bam 39754744847 BAM harmonized CPTAC3 65f8931a-069b-4fc1-aefb-9dd386c3c41c d11046985cd9a3e5b24412c191de1423 {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal"} -C3N-00832.WXS.T C3N-00832 CCRCC WXS tumor CPT0078800009 CPT0078800009.WholeExome.RP-1303.bam 28206562500 BAM aligned CPTAC3 35bd4d75-d425-4b79-a9e7-50a5531192e3 bbe43d152c90142b130f5dcc716a8fca {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor"} -C3N-00832.WXS.T.hg38 C3N-00832 CCRCC WXS tumor CPT0078800009 80e53432-49f8-423b-b1ec-c3e7c2aa2a38_gdc_realn.bam 38790048381 BAM harmonized CPTAC3 c3f418aa-a956-45f0-8722-7051115cf8fe a42cb3c272d43555563809fe4421af41 {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor"} -C3N-00834.MethArray.Green.A C3N-00834 CCRCC Methylation_Array tissue_normal CPT0078840009 204930640064_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2f963aff-c2a5-4795-a28d-74ecd99516f5 2162e287547af25002c37dd47c9b75bf {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.MethArray.Green.T C3N-00834 CCRCC Methylation_Array tumor CPT0078830009 202184900149_R05C01_Grn.idat 13676256 IDAT Green NA CPTAC3 88a9644e-7525-4f3d-843f-e7e042651935 b3703ad11dc9023bb7f8bf14929ec504 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor"} -C3N-00834.MethArray.Red.A C3N-00834 CCRCC Methylation_Array tissue_normal CPT0078840009 204930640064_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 411e4515-9521-40f0-b853-c67e521bfa54 f3385e01bd8c237b0a53bd7dc4cc628d {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.MethArray.Red.T C3N-00834 CCRCC Methylation_Array tumor CPT0078830009 202184900149_R05C01_Red.idat 13676256 IDAT Red NA CPTAC3 5fac4d37-3e2f-482b-9589-292f1f6244bc 74f06045fcfc9ea2c2d3332a2950bec1 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor"} -C3N-00834.miRNA-Seq.A.hg38 C3N-00834 CCRCC miRNA-Seq tissue_normal CPT0078840006 7cca990f-7e32-41a8-a80b-58364c2dd212_mirnaseq_gdc_realn.bam 187348857 BAM harmonized CPTAC3 81bd2540-3678-42a5-a732-6dea370468b0 9b586e97ada7491ed508373db500878d {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.miRNA-Seq.S18_L008_R1.T C3N-00834 CCRCC miRNA-Seq tumor CPT0078830006 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L008_R1_001.unaln.bam 283603671 BAM S18_L008_R1 unaligned CPTAC3 1ecceb8f-3c14-4204-b91f-340c54328600 796123c940421ec26eb4d894a1c9b48b {"aliquot_tag": "ALQ_637d453b", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00834.miRNA-Seq.S23_L003_R1.A C3N-00834 CCRCC miRNA-Seq tissue_normal CPT0078840006 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L003_R1_001.unaln.bam 166880981 BAM S23_L003_R1 unaligned CPTAC3 80d9862a-aef6-497c-9aa6-39748f755286 8bd57eac38ac0433d1018548182571ca {"aliquot_tag": "ALQ_d15d992b", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.miRNA-Seq.T.hg38 C3N-00834 CCRCC miRNA-Seq tumor CPT0078830006 d4b6f3f7-cd41-4e19-9b39-73ec5629a9e1_mirnaseq_gdc_realn.bam 310651020 BAM harmonized CPTAC3 47fe2a34-7cad-49aa-be0b-0f7fae76cbf8 57640bae67259b12dabd279f4ff05523 {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor"} -C3N-00834.RNA-Seq.chimeric.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.chimeric.gdc_realn.bam 42421478 BAM chimeric harmonized CPTAC3 bdff0bdf-0ac2-4e9d-82c5-3c8a8162a00a 942efbbad7d887e9d40cd7ea87bd601a {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.RNA-Seq.chimeric.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.chimeric.gdc_realn.bam 170263334 BAM chimeric harmonized CPTAC3 9fde1763-b115-4ef1-b232-fbe89dd62617 e20b3bf667d6170efe53ea2668056325 {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor"} -C3N-00834.RNA-Seq.genomic.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.genomic.gdc_realn.bam 8296844679 BAM genomic harmonized CPTAC3 a95e0421-eebd-4f4f-9152-d14c53d37e7e c9363e5d07cebf011c206a7a0d0a19bc {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.RNA-Seq.genomic.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.genomic.gdc_realn.bam 8576316786 BAM genomic harmonized CPTAC3 7e87c07d-bb84-4037-a75c-8e9204fe592b 14496087b2b858bb75f67a9e5b28a60e {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor"} -C3N-00834.RNA-Seq.S33_L006_R1.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R1_001.fastq.gz 3924986180 FASTQ S33_L006_R1 unaligned CPTAC3 70813edb-6aad-47cc-b2d1-44787436cf6d c7a2246a14482cce5f85d2c0d89d958c {"aliquot_tag": "ALQ_d15d992b", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.RNA-Seq.S33_L006_R2.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R2_001.fastq.gz 4309424292 FASTQ S33_L006_R2 unaligned CPTAC3 b97d09aa-4301-41e5-b6fa-5c90cc81b4bf 34da619af2992cf8088aaa0afe9c4f87 {"aliquot_tag": "ALQ_d15d992b", "sample": "S33", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.RNA-Seq.S8_L002_R1.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R1_001.fastq.gz 4105831499 FASTQ S8_L002_R1 unaligned CPTAC3 a29dc27e-82dc-46be-8d51-e09157367501 efbd09f70ec1eb1de6415ab33de08bb6 {"aliquot_tag": "ALQ_637d453b", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00834.RNA-Seq.S8_L002_R2.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R2_001.fastq.gz 4416622812 FASTQ S8_L002_R2 unaligned CPTAC3 17ada189-9329-4f1f-b2cf-c73171512d49 5fa1a11d3a9293acf078be398a39ac17 {"aliquot_tag": "ALQ_637d453b", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00834.RNA-Seq.transcriptome.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.transcriptome.gdc_realn.bam 9092420505 BAM transcriptome harmonized CPTAC3 17de8650-69f2-4809-9415-204bc360ec63 e86e91ff27b10e14e87102e7322dd910 {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.RNA-Seq.transcriptome.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.transcriptome.gdc_realn.bam 12828349249 BAM transcriptome harmonized CPTAC3 583360c3-c86b-4a9a-8853-a14e78da1ec2 db74302a70d9cc3b79da9d1db51d2cfb {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor"} -C3N-00834.WGS.A C3N-00834 CCRCC WGS tissue_normal CPT0078840009 CPT0078840009.WholeGenome.RP-1303.bam 63294348929 BAM aligned CPTAC3 b91d6d00-0fa5-4295-8037-3dbef2b675ca 91ac1297eb2ad3fe1c2d1d935d405661 {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.WGS.A.hg38 C3N-00834 CCRCC WGS tissue_normal CPT0078840009 cf4e4723-95df-4d69-a727-b030082f8b20_wgs_gdc_realn.bam 92007497524 BAM harmonized CPTAC3 f30f4f9e-4ec2-4d7f-bb8c-23a697defb22 254b7a3ff2102a3a475287d250e0cc93 {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.WGS.N C3N-00834 CCRCC WGS blood_normal CPT0078870002 CPT0078870002.WholeGenome.RP-1303.bam 66775303940 BAM aligned CPTAC3 d06d4331-e69b-4000-8aee-2253c02e39a4 89330fb981338dcf20a37163839114e3 {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00834.WGS.N.hg38 C3N-00834 CCRCC WGS blood_normal CPT0078870002 3472b9ea-b147-4cd6-88d8-53c41cbe3efe_gdc_realn.bam 101403321079 BAM harmonized CPTAC3 2fde3866-807d-43ac-b615-8bfbc01c0baf b453d446bbc14516b286a9e0ea67f939 {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00834.WGS.T C3N-00834 CCRCC WGS tumor CPT0078830009 CPT0078830009.WholeGenome.RP-1303.bam 57774734623 BAM aligned CPTAC3 abf399d5-a285-4539-a75a-da6331d7784a a14e28468a454b40f72d432975b2ef51 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor"} -C3N-00834.WGS.T.hg38 C3N-00834 CCRCC WGS tumor CPT0078830009 c913633d-4498-4e7c-aa72-c7bd0c2924fa_gdc_realn.bam 87478246080 BAM harmonized CPTAC3 8059f369-bc8d-4a49-8701-4e266fa9a995 fc4c5c606b1eadfafe63f939e4967db1 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor"} -C3N-00834.WXS.A C3N-00834 CCRCC WXS tissue_normal CPT0078840009 CPT0078840009.WholeExome.RP-1303.bam 38219534472 BAM aligned CPTAC3 bf91fa69-58d4-41a3-bd10-a4df98a55a59 2a9013647f784b164f07c1f21b0cd784 {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.WXS.A.hg38 C3N-00834 CCRCC WXS tissue_normal CPT0078840009 cf4e4723-95df-4d69-a727-b030082f8b20_wxs_gdc_realn.bam 51450090167 BAM harmonized CPTAC3 13aef238-650e-4deb-be40-2fb7f9b87b64 fa1f8e263319b7531daa090163c47c2c {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00834.WXS.N C3N-00834 CCRCC WXS blood_normal CPT0078870002 CPT0078870002.WholeExome.RP-1303.bam 26634772618 BAM aligned CPTAC3 7b341f5a-4b93-4ce1-abfc-d2907ad63c8a ff25f1482b055d84240867cb3e33ddd1 {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00834.WXS.N.hg38 C3N-00834 CCRCC WXS blood_normal CPT0078870002 3472b9ea-b147-4cd6-88d8-53c41cbe3efe_gdc_realn.bam 36196304357 BAM harmonized CPTAC3 d6406e54-5b34-4f16-91f4-3d61e9e7ce85 eba900136cc611fc5b6879dc780ae41e {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00834.WXS.T C3N-00834 CCRCC WXS tumor CPT0078830009 CPT0078830009.WholeExome.RP-1303.bam 32724119964 BAM aligned CPTAC3 77bdd0ad-c55b-4ec7-96c3-cc6097e354fa bcb249ffc2d9ec871bd91fb6dc3e553a {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor"} -C3N-00834.WXS.T.hg38 C3N-00834 CCRCC WXS tumor CPT0078830009 c913633d-4498-4e7c-aa72-c7bd0c2924fa_gdc_realn.bam 45211018021 BAM harmonized CPTAC3 254a69d8-6bbf-4e44-bdcb-a3a6a8a9de09 4d88b0b63d3d33dddc0b849bd6df8fb7 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor"} -C3N-00835.MethArray.Green.T C3N-00835 CCRCC Methylation_Array tumor CPT0379760009 205589740002_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 860c6f18-bbc5-4e1b-af81-2f4401070c9f 2c52d8b0b58476e8c6f491898d6a6309 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor"} -C3N-00835.MethArray.Red.T C3N-00835 CCRCC Methylation_Array tumor CPT0379760009 205589740002_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 d0799d49-2b6d-4403-86ba-85ad843a5bbc 8a2ef690946287762aa258bad05d10f9 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor"} -C3N-00835.miRNA-Seq.S43_L003_R1.T C3N-00835 CCRCC miRNA-Seq tumor CPT0379760006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGATGT_S43_L003_R1_001.unaln.bam 156332770 BAM S43_L003_R1 unaligned CPTAC3 8916a64c-e1dd-4324-8be8-3cacd2992b93 bfaa8a6184509a1a47b24f919418cb74 {"aliquot_tag": "ALQ_c5314fef", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00835.miRNA-Seq.T.hg38 C3N-00835 CCRCC miRNA-Seq tumor CPT0379760006 fc8c60c7-9ba5-4176-b6e8-0093df3c0a09_mirnaseq_gdc_realn.bam 167584818 BAM harmonized CPTAC3 ae8c5d97-cd9e-445c-81b9-2f9c75963595 d704b8b2ca427287a3e3d501ce8d87f6 {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor"} -C3N-00835.RNA-Seq.chimeric.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.chimeric.gdc_realn.bam 106185527 BAM chimeric harmonized CPTAC3 64b015ff-4b13-4060-849f-13421e2810cb 78e17b998a744226e58d36d1df4fe2be {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor"} -C3N-00835.RNA-Seq.genomic.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.genomic.gdc_realn.bam 10205729254 BAM genomic harmonized CPTAC3 ba5b3934-2f9d-41e4-9fe4-1f52122ff890 1a60d72825ce0561bc266f1c410ffbd0 {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor"} -C3N-00835.RNA-Seq.S32_L008_R1.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 4647548336 FASTQ S32_L008_R1 unaligned CPTAC3 31889c13-b96a-4e90-b7af-f4e9b8968d75 981b6098a1029a41dd192a5c7938c2b2 {"aliquot_tag": "ALQ_c5314fef", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00835.RNA-Seq.S32_L008_R2.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 5147785192 FASTQ S32_L008_R2 unaligned CPTAC3 ad3fedb2-00e1-4987-bb86-d02a4f3c50d1 3cc565746d0c7672808b490e03df378a {"aliquot_tag": "ALQ_c5314fef", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00835.RNA-Seq.transcriptome.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.transcriptome.gdc_realn.bam 13793597745 BAM transcriptome harmonized CPTAC3 7ecb4399-cc7e-4993-a2e3-35b488e08a6a bb1d868df7f3ecf73d7dd200fcb303f4 {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor"} -C3N-00835.WGS.N C3N-00835 CCRCC WGS blood_normal CPT0386430002 CPT0386430002.WholeGenome.RP-2158.bam 22472743254 BAM aligned CPTAC3 f16ee0f0-819e-46e3-846f-7f8e5988fb91 0b347e6099b0038cc82a2c89d8cf918f {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00835.WGS.N.hg38 C3N-00835 CCRCC WGS blood_normal CPT0386430002 23fe606a-7dc4-4b22-bb46-92bdef045100_wgs_gdc_realn.bam 66475736026 BAM harmonized CPTAC3 f58baf98-491c-455a-b819-fe36bf57b223 1fd4be631561ee6abf375ca6d4b0a23d {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00835.WGS.T C3N-00835 CCRCC WGS tumor CPT0379760009 CPT0379760009.WholeGenome.RP-2158.bam 22773167943 BAM aligned CPTAC3 685c3d85-b4d7-4ab5-99c6-468e36720544 4fe5bbe741b2dc77038417b86893e399 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor"} -C3N-00835.WGS.T.hg38 C3N-00835 CCRCC WGS tumor CPT0379760009 cdabc374-04c1-40b3-8ae1-2a94eba74ff0_wgs_gdc_realn.bam 69326977309 BAM harmonized CPTAC3 2d298fe7-96d6-48fd-9797-b44a64a47a5d 8dbbbbe5da39aee3ef43f440a48b372d {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor"} -C3N-00835.WXS.N C3N-00835 CCRCC WXS blood_normal CPT0386430002 CPT0386430002.WholeExome.RP-1303.bam 29894332177 BAM aligned CPTAC3 189ae8f3-3d32-426f-b5fe-2cb195fbbc1c 55deb9d2b687e7f3773e1622b6ccdd5e {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00835.WXS.N.hg38 C3N-00835 CCRCC WXS blood_normal CPT0386430002 23fe606a-7dc4-4b22-bb46-92bdef045100_wxs_gdc_realn.bam 40629434358 BAM harmonized CPTAC3 4716b5bc-9e86-40bb-9247-85f69490c927 82b941c0bb902474832cf3a332022576 {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal"} -C3N-00835.WXS.T C3N-00835 CCRCC WXS tumor CPT0379760009 CPT0379760009.WholeExome.RP-1303.bam 23214233188 BAM aligned CPTAC3 18e1dc69-0017-47f3-8173-e575572f9a6f 221903d43eb897ae21ccc23fd22c7a68 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor"} -C3N-00835.WXS.T.hg38 C3N-00835 CCRCC WXS tumor CPT0379760009 cdabc374-04c1-40b3-8ae1-2a94eba74ff0_wxs_gdc_realn.bam 31811007033 BAM harmonized CPTAC3 bf90dfeb-0539-49be-b436-930fcf2e884c 90667bc43880cfce05bc96ad4280e0e9 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor"} -C3N-00836.MethArray.Green.T C3N-00836 UCEC Methylation_Array tumor CPT0023810009 202184900110_R02C01_Grn.idat 13676256 IDAT Green NA CPTAC3 71202e49-a728-4716-986c-c2e28dfe9e1c 930ca3061753695053e107f2015eaaa1 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor"} -C3N-00836.MethArray.Red.T C3N-00836 UCEC Methylation_Array tumor CPT0023810009 202184900110_R02C01_Red.idat 13676256 IDAT Red NA CPTAC3 09229c28-8d71-4727-acdb-c89b1de5294b 22f97888c50733a1656ab695e491218c {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor"} -C3N-00836.miRNA-Seq.S43_L003_R1.T C3N-00836 UCEC miRNA-Seq tumor CPT0023810006 180924_UNC31-K00269_0154_AHWTMLBBXX_ACAGTG_S43_L003_R1_001.unaln.bam 199848463 BAM S43_L003_R1 unaligned CPTAC3 ca035248-8ee1-4344-a480-368a3ff2c821 a9c7ee0804138d2ac0bdbc520fd4ca2b {"aliquot_tag": "ALQ_535a4cc5", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00836.miRNA-Seq.T.hg38 C3N-00836 UCEC miRNA-Seq tumor CPT0023810006 01defb40-46cb-481d-b6e3-3be864e6e156_mirnaseq_gdc_realn.bam 219415194 BAM harmonized CPTAC3 94e6a782-c0f3-4bee-a62c-2ce90e1e1586 2d05ecdcfa5454f2fc2dbf412383be07 {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor"} -C3N-00836.RNA-Seq.chimeric.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.chimeric.gdc_realn.bam 83346250 BAM chimeric harmonized CPTAC3 49d5419f-906f-4fda-ac7a-17f058676293 61c44176cebeefca1f345d1f16c12c9b {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor"} -C3N-00836.RNA-Seq.genomic.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.genomic.gdc_realn.bam 7690638681 BAM genomic harmonized CPTAC3 e9ded5c6-aa0b-43db-ab41-3ccf444a1b76 57a18677766ee44894fadf69d3c07c71 {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor"} -C3N-00836.RNA-Seq.S6_L008_R1.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R1_001.fastq.gz 3739893939 FASTQ S6_L008_R1 unaligned CPTAC3 f19c6938-942c-47bd-b72d-79d62e8fbeb8 f32f43a984b9abc8e38b7243862d2520 {"aliquot_tag": "ALQ_535a4cc5", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00836.RNA-Seq.S6_L008_R2.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R2_001.fastq.gz 4041503918 FASTQ S6_L008_R2 unaligned CPTAC3 5c51da7e-eead-4fd1-8343-c4d4ddc19458 b7eea84db3b7e1722e2aafa22c84f267 {"aliquot_tag": "ALQ_535a4cc5", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00836.RNA-Seq.transcriptome.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.transcriptome.gdc_realn.bam 9978064516 BAM transcriptome harmonized CPTAC3 2f4565f6-f8dc-4ecf-a91d-a6f558ed2799 0ec0ac967ed230a6193cc51b8ebcb312 {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor"} -C3N-00836.WGS.N C3N-00836 UCEC WGS blood_normal CPT0023910002 CPT0023910002.WholeGenome.RP-1303.bam 61848680396 BAM aligned CPTAC3 f7292774-63e7-48af-b349-5baa0bfae812 2bcdd0ffc71ed8618fe3bc780f3d3301 {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal"} -C3N-00836.WGS.N.hg38 C3N-00836 UCEC WGS blood_normal CPT0023910002 fa4f35a1-cb0a-4d92-8631-4f675161b355_gdc_realn.bam 90862219577 BAM harmonized CPTAC3 09220dab-d4b0-4d15-bb22-a222b5d0abc1 dd11dd26ad360ce6062448da11776ccd {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal"} -C3N-00836.WGS.T C3N-00836 UCEC WGS tumor CPT0023810009 CPT0023810009.WholeGenome.RP-1303.bam 61813589758 BAM aligned CPTAC3 bf1919f9-ec1f-4f67-be2e-52ce92e21b5d 022908ed42999d5fa3c605703174c486 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor"} -C3N-00836.WGS.T.hg38 C3N-00836 UCEC WGS tumor CPT0023810009 08fed8ee-199e-4b11-bcee-2b3b2b320ae9_gdc_realn.bam 89213250637 BAM harmonized CPTAC3 3b118458-2f1c-42f4-9ae0-17485da8782a 60e784a00b5e0450683199e29006d3b1 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor"} -C3N-00836.WXS.N C3N-00836 UCEC WXS blood_normal CPT0023910002 CPT0023910002.WholeExome.RP-1303.bam 25792530678 BAM aligned CPTAC3 7cd78b8b-aa8b-4319-a7a2-a0116fdb5cf3 26026fbec7073828d49b67c4eed77853 {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal"} -C3N-00836.WXS.N.hg38 C3N-00836 UCEC WXS blood_normal CPT0023910002 fa4f35a1-cb0a-4d92-8631-4f675161b355_gdc_realn.bam 35104751912 BAM harmonized CPTAC3 fc4f4a44-123f-4d29-82e8-c155ed19910f fbfdcb6014bd3635ab2685e8153830c9 {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal"} -C3N-00836.WXS.T C3N-00836 UCEC WXS tumor CPT0023810009 CPT0023810009.WholeExome.RP-1303.bam 21886191843 BAM aligned CPTAC3 885e2d3a-b405-444f-9657-32e7aba0d450 3fb7d41ad8314765c0e2afc29235b75f {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor"} -C3N-00836.WXS.T.hg38 C3N-00836 UCEC WXS tumor CPT0023810009 08fed8ee-199e-4b11-bcee-2b3b2b320ae9_gdc_realn.bam 30037137409 BAM harmonized CPTAC3 b3f4557b-7fb4-41e5-b5b9-44c725451295 87a24001fa1db76703aed6d341acba45 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor"} -C3N-00839.MethArray.Green.T C3N-00839 LSCC Methylation_Array tumor CPT0024970009 202163530120_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 669278c7-93d4-4d55-82af-849816a5f965 f362aedd8901aba23b31619bbd24728d {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor"} -C3N-00839.MethArray.Red.T C3N-00839 LSCC Methylation_Array tumor CPT0024970009 202163530120_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 9e340afb-246b-4d85-8f49-902d4e043893 8b9fab0f91b00a977897d534651b5b0c {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor"} -C3N-00839.miRNA-Seq.S45_L003_R1.T C3N-00839 LSCC miRNA-Seq tumor CPT0024970006 180924_UNC31-K00269_0154_AHWTMLBBXX_GGCTAC_S45_L003_R1_001.unaln.bam 216944500 BAM S45_L003_R1 unaligned CPTAC3 14814052-e05f-4230-896f-7f4a6bf54ec8 3118e0b23b25209d99cf21a415c25fc3 {"aliquot_tag": "ALQ_d2e1544e", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00839.miRNA-Seq.T.hg38 C3N-00839 LSCC miRNA-Seq tumor CPT0024970006 db2bd953-a615-4adc-8d1b-bdbfd1202a1a_mirnaseq_gdc_realn.bam 238489079 BAM harmonized CPTAC3 c1efc64c-b795-4f1e-84aa-885bc4506d3f eec2f833ce01bef8fd5aeedeac975929 {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor"} -C3N-00839.RNA-Seq.chimeric.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.chimeric.gdc_realn.bam 88812673 BAM chimeric harmonized CPTAC3 7b9a27b5-1a1c-45e9-986a-881fa46fcd48 154448d800ce8cc8583232c83082ff7c {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor"} -C3N-00839.RNA-Seq.genomic.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.genomic.gdc_realn.bam 8110345357 BAM genomic harmonized CPTAC3 f1833804-0512-498f-ad0e-e27d641500e4 9b5a01d34186658c63846b4eed82b846 {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor"} -C3N-00839.RNA-Seq.S22_L008_R1.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R1_001.fastq.gz 3780572540 FASTQ S22_L008_R1 unaligned CPTAC3 d7fe377f-d586-48cc-94f7-88acb6cbc016 df81ef6ef55e71da2b5ff05a6fdc4436 {"aliquot_tag": "ALQ_d2e1544e", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00839.RNA-Seq.S22_L008_R2.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R2_001.fastq.gz 3809319737 FASTQ S22_L008_R2 unaligned CPTAC3 9fea3417-da33-45a7-a57f-93e97151289d 52143e51cede8a5f40ed110e54925832 {"aliquot_tag": "ALQ_d2e1544e", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00839.RNA-Seq.transcriptome.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.transcriptome.gdc_realn.bam 9322250128 BAM transcriptome harmonized CPTAC3 a5a6585a-fe35-4972-927d-2e727f6e156e 14791355ec662f013277f84178bf02da {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor"} -C3N-00839.WGS.N C3N-00839 LSCC WGS blood_normal CPT0026180002 CPT0026180002.WholeGenome.RP-1303.bam 89334773314 BAM aligned CPTAC3 d7e9b08a-c0b0-41b8-81f8-fd9febae970d 4cb1f9cfdc2c9eedd1660fa07b845ea6 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00839.WGS.N.hg38 C3N-00839 LSCC WGS blood_normal CPT0026180002 516dbdf8-2b5a-4bb3-ae4e-95c4d3700e6c_gdc_realn.bam 139953537186 BAM harmonized CPTAC3 2afa22d9-5b15-4eee-91e4-b9b52787d940 e979bfd6c7e55aa0d0d188f4c75c2993 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00839.WGS.T C3N-00839 LSCC WGS tumor CPT0024970009 CPT0024970009.WholeGenome.RP-1303.bam 68501059023 BAM aligned CPTAC3 62694aa0-71f1-4cc8-9e78-fcec4dcfba13 480fcd2d8e51eb61be226b292ca6eb58 {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor"} -C3N-00839.WGS.T.hg38 C3N-00839 LSCC WGS tumor CPT0024970009 b8a43596-790d-461a-bc55-3c2bf876b979_gdc_realn.bam 105484587913 BAM harmonized CPTAC3 82a9e684-fe5b-41eb-9b5a-6ae7216cf20e 5ac0f9f1eb03a1e97f9fe2434e4eb09a {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor"} -C3N-00839.WXS.N C3N-00839 LSCC WXS blood_normal CPT0026180002 CPT0026180002.WholeExome.RP-1303.bam 29719562393 BAM aligned CPTAC3 0e2066a8-c012-4633-a28c-556ca16e201d 53fde9cbbd941535e2cd8c6885d1b7e5 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00839.WXS.N.hg38 C3N-00839 LSCC WXS blood_normal CPT0026180002 516dbdf8-2b5a-4bb3-ae4e-95c4d3700e6c_gdc_realn.bam 39993924874 BAM harmonized CPTAC3 832224b4-903f-49d3-ab34-e5ca88d99a54 a1e52be3f580b71e621bc84e06e68166 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-00839.WXS.T C3N-00839 LSCC WXS tumor CPT0024970009 CPT0024970009.WholeExome.RP-1303.bam 35083401750 BAM aligned CPTAC3 55cf3c99-3264-45fb-95c3-b25a9605c0dd 7ca20411ea3a7eee5ea35d6d5e6d7dda {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor"} -C3N-00839.WXS.T.hg38 C3N-00839 LSCC WXS tumor CPT0024970009 b8a43596-790d-461a-bc55-3c2bf876b979_gdc_realn.bam 47748726029 BAM harmonized CPTAC3 63b3f8cb-279c-4143-b608-6e52f757d48a 0c13a66d16e368e077efa6b5203bfaaf {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor"} -C3N-00846.MethArray.Green.T C3N-00846 HNSCC Methylation_Array tumor CPT0024810009 202163550007_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c83e5b0f-84fd-4e33-8438-042ae10cb3f8 ed538e2a8aaa1442997bab1d4af2b47c {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor"} -C3N-00846.MethArray.Red.T C3N-00846 HNSCC Methylation_Array tumor CPT0024810009 202163550007_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 521139dd-4ea1-4183-93d6-1b5464ce7831 5d46bfac28e040159f1ef21730dfa04c {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor"} -C3N-00846.miRNA-Seq.S8_L003_R1.T C3N-00846 HNSCC miRNA-Seq tumor CPT0024810006 181113_UNC31-K00269_0164_AH23NNBBXY_CACTCA_S8_L003_R1_001.unaln.bam 259323326 BAM S8_L003_R1 unaligned CPTAC3 d5085069-3bec-4a1a-97c4-413226426357 2a0816749b52f7d98ebd223ec763af4f {"aliquot_tag": "ALQ_96fd724b", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00846.miRNA-Seq.T.hg38 C3N-00846 HNSCC miRNA-Seq tumor CPT0024810006 9e849a3d-7532-4785-820c-700b2bda8dea_mirnaseq_gdc_realn.bam 281318645 BAM harmonized CPTAC3 7f2b11a3-1a9b-47c7-80c3-e1d5b74e1d1d d13912cc3b9bc287e722e2d0b2b7f7ab {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor"} -C3N-00846.RNA-Seq.chimeric.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.chimeric.gdc_realn.bam 112345312 BAM chimeric harmonized CPTAC3 4a330e56-b2e6-473b-b3fe-9d74fdd5f6e1 7198694e2b81390091d201c9dcff701d {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor"} -C3N-00846.RNA-Seq.genomic.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.genomic.gdc_realn.bam 9358590589 BAM genomic harmonized CPTAC3 655b16ed-6152-4c58-8a27-32acf5a64a4b 5a1b495d2c9f6ac2411b36c82fe4ea41 {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor"} -C3N-00846.RNA-Seq.S5_L008_R1.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R1_001.fastq.gz 4409378702 FASTQ S5_L008_R1 unaligned CPTAC3 d6a534be-f72c-48fd-b081-b621cf712da6 a8e040d173ab71c00ac77987ba70ebe3 {"aliquot_tag": "ALQ_96fd724b", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00846.RNA-Seq.S5_L008_R2.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R2_001.fastq.gz 4778156021 FASTQ S5_L008_R2 unaligned CPTAC3 49ae8013-5534-42f9-9c67-921897c83feb 4c113db538277d09fd96cfae08f3ce39 {"aliquot_tag": "ALQ_96fd724b", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00846.RNA-Seq.transcriptome.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.transcriptome.gdc_realn.bam 11002126024 BAM transcriptome harmonized CPTAC3 1939d06b-d192-43e1-8a31-2723ced8c9cb b597b337d452798f7ab0f51eb87bda49 {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor"} -C3N-00846.WGS.N C3N-00846 HNSCC WGS blood_normal CPT0024890002 CPT0024890002.WholeGenome.RP-1303.bam 85879023449 BAM aligned CPTAC3 68e7cca7-98d5-4cc5-8423-2ba638053778 5708e81cb3b97b83b9e283611391a4e1 {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00846.WGS.N.hg38 C3N-00846 HNSCC WGS blood_normal CPT0024890002 50ca401a-353c-4ac6-b5b1-10ef34bcc849_gdc_realn.bam 134628683555 BAM harmonized CPTAC3 88ab56f7-89d2-4247-86c8-e168f53c54b6 556bc42d0e6c0b01b3d1c15aad3cec14 {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00846.WGS.T C3N-00846 HNSCC WGS tumor CPT0024810009 CPT0024810009.WholeGenome.RP-1303.bam 67635311417 BAM aligned CPTAC3 ba6c6061-06c3-4497-b85d-89f7ca843428 a8c4134d72f97029bd00deaedc61eeef {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor"} -C3N-00846.WGS.T.hg38 C3N-00846 HNSCC WGS tumor CPT0024810009 e0c7b843-344c-45b6-bdf8-824f62f9fd52_gdc_realn.bam 99427725960 BAM harmonized CPTAC3 64de0f5f-e915-4475-9510-7059a8648148 5a0f54bbef4a4f971ec9f3853dfae2c3 {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor"} -C3N-00846.WXS.N C3N-00846 HNSCC WXS blood_normal CPT0024890002 CPT0024890002.WholeExome.RP-1303.bam 28378688179 BAM aligned CPTAC3 63476b29-20e3-4de9-814d-18983735f909 0d1801067621920e87da9fe61fafa25e {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00846.WXS.N.hg38 C3N-00846 HNSCC WXS blood_normal CPT0024890002 50ca401a-353c-4ac6-b5b1-10ef34bcc849_gdc_realn.bam 38266255737 BAM harmonized CPTAC3 c36d42bd-209c-40ac-bb99-8d89f72277cf 80412548f79ce19c7ca0a9a5f84cb630 {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal"} -C3N-00846.WXS.T C3N-00846 HNSCC WXS tumor CPT0024810009 CPT0024810009.WholeExome.RP-1303.bam 36823359181 BAM aligned CPTAC3 64e8d0b4-fb20-4dd0-bd0b-42d3a78c01c6 0bb6be6e5b6ba2a97489aa81cde6b3ec {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor"} -C3N-00846.WXS.T.hg38 C3N-00846 HNSCC WXS tumor CPT0024810009 e0c7b843-344c-45b6-bdf8-824f62f9fd52_gdc_realn.bam 50599897862 BAM harmonized CPTAC3 2ce5839c-ad80-4612-9279-7d359e24dfd8 ae11f620b010af1dde64f3a7e852a1a3 {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor"} -C3N-00847.MethArray.Green.T C3N-00847 UCEC Methylation_Array tumor CPT0027650009 202163550007_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 96035dac-b1dd-442c-9170-34a862fee567 dbc780c8be72f4ebdcc5b0554a349655 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor"} -C3N-00847.MethArray.Red.T C3N-00847 UCEC Methylation_Array tumor CPT0027650009 202163550007_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 e1e3c058-93fc-48b8-822d-e64a9a3b0bdf abc1cceec4291489679a0be02c12c40d {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor"} -C3N-00847.miRNA-Seq.S18_L003_R1.T C3N-00847 UCEC miRNA-Seq tumor CPT0027650006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTCAA_S18_L003_R1_001.unaln.bam 176526596 BAM S18_L003_R1 unaligned CPTAC3 0adf088d-8bc8-452b-9988-f126df6df5c8 90d5d3c1fa377a0142081f429683bef5 {"aliquot_tag": "ALQ_689faf66", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00847.miRNA-Seq.T.hg38 C3N-00847 UCEC miRNA-Seq tumor CPT0027650006 468d31bf-b629-4639-96e0-261fd3742870_mirnaseq_gdc_realn.bam 191854955 BAM harmonized CPTAC3 ab359813-4f0a-45e9-a2f4-783c53b71a2f 2021562baa01bb820db2d5f0d342de27 {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor"} -C3N-00847.RNA-Seq.chimeric.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.chimeric.gdc_realn.bam 36382978 BAM chimeric harmonized CPTAC3 355ddceb-c1ab-4f30-a624-241d762ff5d2 27d6d8eaf81999672614c9512b4a6c05 {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor"} -C3N-00847.RNA-Seq.genomic.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.genomic.gdc_realn.bam 9418635827 BAM genomic harmonized CPTAC3 97c8b7b7-7975-42ab-a6a1-bd1eaa6288c2 48299d486e3e075948891e53173d042f {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor"} -C3N-00847.RNA-Seq.S6_L002_R1.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4868159696 FASTQ S6_L002_R1 unaligned CPTAC3 a3c73a24-ad46-4690-a782-0c9de7554f6b dfb31d13b1637fda657a7ce887cddae7 {"aliquot_tag": "ALQ_689faf66", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00847.RNA-Seq.S6_L002_R2.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R2_001.fastq.gz 5214500174 FASTQ S6_L002_R2 unaligned CPTAC3 33715f26-60b2-4c5d-994c-00faa767e9be 7f92b7c2bad607c3ceec9057e131b0e9 {"aliquot_tag": "ALQ_689faf66", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00847.RNA-Seq.transcriptome.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.transcriptome.gdc_realn.bam 11499714813 BAM transcriptome harmonized CPTAC3 549fb9e1-0cdc-4793-8325-202e7b397250 8c6053a34964ef8442e7bdb4993ac894 {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor"} -C3N-00847.WGS.N C3N-00847 UCEC WGS blood_normal CPT0027740002 CPT0027740002.WholeGenome.RP-1303.bam 64327564784 BAM aligned CPTAC3 095599c0-d54e-41e9-80b6-b721e2bb357a ba2337a09b0d875382558ace5993f196 {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00847.WGS.N.hg38 C3N-00847 UCEC WGS blood_normal CPT0027740002 9333c264-b25a-4ad9-8cbc-60d4d961a1e4_gdc_realn.bam 93972603059 BAM harmonized CPTAC3 fbdad251-d8da-4651-9e23-ab9aa7ebdfca 65cdf4a8b855ea825f788cbd17766f3f {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00847.WGS.T C3N-00847 UCEC WGS tumor CPT0027650009 CPT0027650009.WholeGenome.RP-1303.bam 63788150929 BAM aligned CPTAC3 340e7844-74c1-4de2-905b-4002036794a3 09698480866ec7bb59053b02b2bdcf66 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor"} -C3N-00847.WGS.T.hg38 C3N-00847 UCEC WGS tumor CPT0027650009 10bc413b-8a36-4190-9e47-48750c262fa0_gdc_realn.bam 91281051234 BAM harmonized CPTAC3 9d6fba33-07d9-4f69-80af-44adc48f100a ebc8cbf469c114b0f57c0d10c35ad343 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor"} -C3N-00847.WXS.N C3N-00847 UCEC WXS blood_normal CPT0027740002 CPT0027740002.WholeExome.RP-1303.bam 22970551963 BAM aligned CPTAC3 bba06639-667d-4675-808d-fbb4ebe45a64 c10f8133f2f5557f6c1c4d4c7ccceef1 {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00847.WXS.N.hg38 C3N-00847 UCEC WXS blood_normal CPT0027740002 9333c264-b25a-4ad9-8cbc-60d4d961a1e4_gdc_realn.bam 31455348061 BAM harmonized CPTAC3 2c32b668-5200-49de-843a-bb14b3707a90 f0fe536ad595fbd74870d20196af4d00 {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal"} -C3N-00847.WXS.T C3N-00847 UCEC WXS tumor CPT0027650009 CPT0027650009.WholeExome.RP-1303.bam 28107503096 BAM aligned CPTAC3 727f7adb-b3b8-4cc4-b732-a1c1355ed9d9 b0fcca3c9e1300788050b283011e1932 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor"} -C3N-00847.WXS.T.hg38 C3N-00847 UCEC WXS tumor CPT0027650009 10bc413b-8a36-4190-9e47-48750c262fa0_gdc_realn.bam 38347634359 BAM harmonized CPTAC3 f418b6a5-909d-4f06-b3b2-da95f81bc611 373938c242e30f0f919657f7de2c2548 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor"} -C3N-00848.MethArray.Green.T C3N-00848 UCEC Methylation_Array tumor CPT0024130009 202163530120_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7f768be5-1826-4b03-a34f-1be8dadd5d05 d0c2a132b11c5188e5a616adcf4b5965 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor"} -C3N-00848.MethArray.Red.T C3N-00848 UCEC Methylation_Array tumor CPT0024130009 202163530120_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 76cd33f5-1a66-42c0-8d91-9e7ed7304b26 ec818dedc7c8d0869fa89caf6a16eb2c {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor"} -C3N-00848.miRNA-Seq.S21_L003_R1.T C3N-00848 UCEC miRNA-Seq tumor CPT0024130006 180924_UNC31-K00269_0154_AHWTMLBBXX_GCCAAT_S21_L003_R1_001.unaln.bam 252901822 BAM S21_L003_R1 unaligned CPTAC3 5f56c26f-133b-4a16-a93c-95ba5024a97e 157f17d357b2b7028f0ab57d21d83435 {"aliquot_tag": "ALQ_cb3270e3", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00848.miRNA-Seq.T.hg38 C3N-00848 UCEC miRNA-Seq tumor CPT0024130006 bc90c25c-ea60-49db-be31-98c7448dbcda_mirnaseq_gdc_realn.bam 274690623 BAM harmonized CPTAC3 7b5cf3c4-5a3d-45f8-9c32-a94dfd42a929 e53583da36659ce0ce6f0d71a56fe35a {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor"} -C3N-00848.RNA-Seq.chimeric.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.chimeric.gdc_realn.bam 80215740 BAM chimeric harmonized CPTAC3 54c058be-e870-49e4-ad67-06dc474162d8 5a8e33f6b76ea5f16d6c4bda7d53bef1 {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor"} -C3N-00848.RNA-Seq.genomic.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.genomic.gdc_realn.bam 9212739487 BAM genomic harmonized CPTAC3 2772baef-9d04-4cf6-be5c-f61963c1b314 1855955feb321e78eac4f5ff363ddfa5 {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor"} -C3N-00848.RNA-Seq.S3_L001_R1.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4443710715 FASTQ S3_L001_R1 unaligned CPTAC3 6e88806d-df9b-40b0-9ab9-d5f5265ef294 8b02ff193595023341e4336fef4afc9a {"aliquot_tag": "ALQ_cb3270e3", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00848.RNA-Seq.S3_L001_R2.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4909078498 FASTQ S3_L001_R2 unaligned CPTAC3 b8f22b8f-204c-48b4-8147-5c9caf3c2f76 305c3bf3d0ee1b366524ef93b8615b27 {"aliquot_tag": "ALQ_cb3270e3", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00848.RNA-Seq.transcriptome.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.transcriptome.gdc_realn.bam 11461735095 BAM transcriptome harmonized CPTAC3 037844f4-123a-4a6b-ab1a-41c75e422859 85ba798d1928bc645b2e7fd032ddbc4c {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor"} -C3N-00848.WGS.N C3N-00848 UCEC WGS blood_normal CPT0024210002 CPT0024210002.WholeGenome.RP-1303.bam 63242209005 BAM aligned CPTAC3 4c207c78-414e-4af7-8d38-907c63b4422d 6e87904bca3b7759a2819486e9273536 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal"} -C3N-00848.WGS.N.hg38 C3N-00848 UCEC WGS blood_normal CPT0024210002 1d98bc15-ba29-4594-bc9d-504e70515a19_gdc_realn.bam 92591371345 BAM harmonized CPTAC3 fa7446b0-a818-4096-941d-746e73d363fa 531602828a5dc1d3af8da49bb93d2443 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal"} -C3N-00848.WGS.T C3N-00848 UCEC WGS tumor CPT0024130009 CPT0024130009.WholeGenome.RP-1303.bam 67452336903 BAM aligned CPTAC3 b77096d5-295b-4ea7-95a9-59fc84f20cd3 f2c1e1d90ae35aeb91f4880fc6d3c40a {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor"} -C3N-00848.WGS.T.hg38 C3N-00848 UCEC WGS tumor CPT0024130009 75c83651-16d9-4099-ac1c-9ac164140aac_gdc_realn.bam 100062541572 BAM harmonized CPTAC3 3a1b5ca0-555b-41e1-bd66-86c2796d69ca 7e0c3267e88b0dd417734f46bec54fe3 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor"} -C3N-00848.WXS.N C3N-00848 UCEC WXS blood_normal CPT0024210002 CPT0024210002.WholeExome.RP-1303.bam 21482023458 BAM aligned CPTAC3 2a32d47a-5ab8-48d7-9992-5f7294ffbfae 0be8e9b040ee53943c916f19c9595e62 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal"} -C3N-00848.WXS.N.hg38 C3N-00848 UCEC WXS blood_normal CPT0024210002 1d98bc15-ba29-4594-bc9d-504e70515a19_gdc_realn.bam 28938014690 BAM harmonized CPTAC3 e562cec2-f26f-4706-9927-f13ea930d5fa 13321fa164f2bdb1d87edfd3df9ab270 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal"} -C3N-00848.WXS.T C3N-00848 UCEC WXS tumor CPT0024130009 CPT0024130009.WholeExome.RP-1303.bam 22560526985 BAM aligned CPTAC3 b2994b0c-76e6-4340-9c95-8ea82b66ef61 1899e8811084819e41fee9ad103831d4 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor"} -C3N-00848.WXS.T.hg38 C3N-00848 UCEC WXS tumor CPT0024130009 75c83651-16d9-4099-ac1c-9ac164140aac_gdc_realn.bam 30670249888 BAM harmonized CPTAC3 ba0c4492-c816-44ed-9ca0-6c610375514f 023a85eba607df50991b4708cf1d6b49 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor"} -C3N-00850.MethArray.Green.T C3N-00850 UCEC Methylation_Array tumor CPT0027810009 202184900128_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 959344c3-caae-4445-af34-eddc6b06123f 344f474ec2209c4d96046c279e75e394 {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor"} -C3N-00850.MethArray.Red.T C3N-00850 UCEC Methylation_Array tumor CPT0027810009 202184900128_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 6e226ee9-5e52-4e65-8e76-c808313aac63 e53f49cf5872c3d146fc344be750160e {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor"} -C3N-00850.miRNA-Seq.S24_L004_R1.T C3N-00850 UCEC miRNA-Seq tumor CPT0027810006 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L004_R1_001.unaln.bam 209131732 BAM S24_L004_R1 unaligned CPTAC3 4b56f1c4-c8c4-41c3-92ae-0e32a05c4a82 94adaa2d348e5d8963d9cde661c775e1 {"aliquot_tag": "ALQ_a71568d6", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00850.miRNA-Seq.T.hg38 C3N-00850 UCEC miRNA-Seq tumor CPT0027810006 c78e5127-7ed8-48e1-97e0-fd8a3c8256fe_mirnaseq_gdc_realn.bam 229747083 BAM harmonized CPTAC3 704912f3-cb62-43db-bf19-279bc4af5ec4 22f6c3fef4a5b588bef57c9e2f85899b {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor"} -C3N-00850.RNA-Seq.chimeric.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.chimeric.gdc_realn.bam 55243852 BAM chimeric harmonized CPTAC3 d698c030-ff5a-4f2f-a7c2-92154c2584f6 95e681f2786b548d0120fb2e82055d4f {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor"} -C3N-00850.RNA-Seq.genomic.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.genomic.gdc_realn.bam 5472842284 BAM genomic harmonized CPTAC3 527ed783-4101-4c41-8e60-873f69a88013 6d1a0252713c5fd1fa0516bb1c724811 {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor"} -C3N-00850.RNA-Seq.S19_L005_R1.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2564751211 FASTQ S19_L005_R1 unaligned CPTAC3 232956d9-bea5-47c0-8fcb-bfbbb8bab7e5 9702089156b6050f5bb69c0952b14295 {"aliquot_tag": "ALQ_a71568d6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00850.RNA-Seq.S19_L005_R2.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 2785220153 FASTQ S19_L005_R2 unaligned CPTAC3 23941127-4227-4b4a-82ea-f76fe7062763 f2b25805402c3ce65e4987675b0873dd {"aliquot_tag": "ALQ_a71568d6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00850.RNA-Seq.transcriptome.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.transcriptome.gdc_realn.bam 5919795180 BAM transcriptome harmonized CPTAC3 44a7c05d-c869-43fb-aa39-e7f2642dfe1f 3f1a75585bfe6071f7c5677f01161c4b {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor"} -C3N-00850.WGS.N C3N-00850 UCEC WGS blood_normal CPT0027890002 CPT0027890002.WholeGenome.RP-1303.bam 63768086170 BAM aligned CPTAC3 ee62a659-d8fa-4706-9ba9-9ec933ed8b24 b47b36e690c6f9800278a24bc2dc6720 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00850.WGS.N.hg38 C3N-00850 UCEC WGS blood_normal CPT0027890002 9872eab8-63d3-4882-877b-7b4de75bba37_gdc_realn.bam 93059377849 BAM harmonized CPTAC3 ac12d7d2-d6d3-454b-aa22-827c6b7a49a9 fd1b7b8faff6edba45af98316f1141b1 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00850.WGS.T C3N-00850 UCEC WGS tumor CPT0027810009 CPT0027810009.WholeGenome.RP-1303.bam 58140141285 BAM aligned CPTAC3 d332e9d9-559e-4080-9c0f-e0e5bb10109c 2744f7cd793aa80f30ce02b25c560ed9 {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor"} -C3N-00850.WGS.T.hg38 C3N-00850 UCEC WGS tumor CPT0027810009 850bd0cf-dd68-40b6-a6b6-83e42e76fd32_gdc_realn.bam 84473691467 BAM harmonized CPTAC3 76e8c02d-65d4-4ff0-bad5-5b0393d401f9 b84dcd32705055fe986c08e704bb2ced {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor"} -C3N-00850.WXS.N C3N-00850 UCEC WXS blood_normal CPT0027890002 CPT0027890002.WholeExome.RP-1303.bam 26162656821 BAM aligned CPTAC3 e7b4e3d1-b988-4a96-a361-2fa1698e1676 2a348b953505fc1b69568dab12a03323 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00850.WXS.N.hg38 C3N-00850 UCEC WXS blood_normal CPT0027890002 9872eab8-63d3-4882-877b-7b4de75bba37_gdc_realn.bam 36316463640 BAM harmonized CPTAC3 513b27f2-8ec9-45d2-bcd4-f733bc617f3b f57265f2872656500c70a9672441b4c6 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal"} -C3N-00850.WXS.T C3N-00850 UCEC WXS tumor CPT0027810009 CPT0027810009.WholeExome.RP-1303.bam 26686627715 BAM aligned CPTAC3 f2f2bd5a-3cab-4f68-92cc-945f1c2e2fac b2617bd0f12ee5f9dca3ab3cf5687280 {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor"} -C3N-00850.WXS.T.hg38 C3N-00850 UCEC WXS tumor CPT0027810009 850bd0cf-dd68-40b6-a6b6-83e42e76fd32_gdc_realn.bam 36640916648 BAM harmonized CPTAC3 35036101-2e5d-4d47-bd7c-3eb638bcf6a2 c1df9d3d0bb992d1a8a0bbe7605d017d {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_470140a3.MethArray.Green.T C3N-00852 CCRCC Methylation_Array tumor CPT0024650012 204367400087_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ca0bb472-0422-4b69-bbac-951412dbea0d 725ee8ec3320f0e3368de0ac6906c055 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_470140a3.MethArray.Red.T C3N-00852 CCRCC Methylation_Array tumor CPT0024650012 204367400087_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 34890c0e-b83c-4186-8578-6ffebdc412c7 c8b97bd626cf162d4b58dc7b852f0736 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_470140a3.WGS.T C3N-00852 CCRCC WGS tumor CPT0024650012 CPT0024650012.WholeGenome.RP-2158.bam 23980027561 BAM aligned CPTAC3 1edd82c7-dbb7-45a5-846b-761ba0491e78 439af316cd22cf69e1466c835b4d0f01 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_470140a3.WGS.T.hg38 C3N-00852 CCRCC WGS tumor CPT0024650012 e57af370-4c03-43d2-b98e-7a11f2e7cc84_wgs_gdc_realn.bam 73485079338 BAM harmonized CPTAC3 d84f4cdc-695e-4a35-96ba-e1f912f8a3bd 9803a1eae7c12f153333eb83c321c8c7 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_470140a3.WXS.T C3N-00852 CCRCC WXS tumor CPT0024650012 CPT0024650012.WholeExome.RP-1303.bam 21611501385 BAM aligned CPTAC3 3e21a8a7-29c7-4281-b40f-1428af5758bb 1d9d1d3ebad3436f2b8c7bb11ce46b63 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_470140a3.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024650012 e57af370-4c03-43d2-b98e-7a11f2e7cc84_wxs_gdc_realn.bam 29369560222 BAM harmonized CPTAC3 a34a9aee-6b72-459d-9b60-43133fabfe43 559055b8b579fa9ef4ed998f9f6426d1 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_8e68d2ba.miRNA-Seq.S34_L005_R1.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024660009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L005_R1_001.unaln.bam 373067205 BAM S34_L005_R1 unaligned CPTAC3 f4ab2c44-6466-4337-b394-e1d16a491b08 82675aa511b44b507d1ca7d4d1839e21 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_8e68d2ba.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024660009 9afc23a1-f750-45df-ab69-9a115b50bd1c_mirnaseq_gdc_realn.bam 404654753 BAM harmonized CPTAC3 3ac59a6d-899d-450c-aff6-d34e727cee6e 6e806cf37e60b6767d643809e7d3b007 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_8e68d2ba.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.chimeric.gdc_realn.bam 301857247 BAM chimeric harmonized CPTAC3 38f41fbb-d91f-482a-adb1-09f7b9229b85 a3d9d5aeac256fb89df858affe24a48d {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_8e68d2ba.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.genomic.gdc_realn.bam 8660389876 BAM genomic harmonized CPTAC3 1cd48568-bdea-4d81-a3a2-74ac1cb167b5 ffee41b780f66af954ec6879e181c910 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_8e68d2ba.RNA-Seq.S4_L001_R1.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R1_001.fastq.gz 4104002160 FASTQ S4_L001_R1 unaligned CPTAC3 d5c8ee92-cf50-456f-aa96-2ef73b985bfe 8a3ff5e4719aa9a377422efbcba49a26 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_8e68d2ba.RNA-Seq.S4_L001_R2.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R2_001.fastq.gz 4969739181 FASTQ S4_L001_R2 unaligned CPTAC3 12ecd8ec-5fc6-46ac-b79e-9b1e3918d8a0 bea9e64e89c995875e6d13e7fd4aba0d {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_8e68d2ba.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.transcriptome.gdc_realn.bam 11698579712 BAM transcriptome harmonized CPTAC3 f4a172d6-889e-4327-9ede-941200db6871 058094644ce041b02ff3a517c1a8c47b {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_a13a73.MethArray.Green.T C3N-00852 CCRCC Methylation_Array tumor CPT0024660012 204372030071_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 cc503702-9b12-481f-909e-43c448745025 416a2791847affd1b37154b70952c4cf {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_a13a73.MethArray.Red.T C3N-00852 CCRCC Methylation_Array tumor CPT0024660012 204372030071_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 43a39ed0-5b25-4b17-905e-e2a0fe895455 516afded624fe5652b65693a2632b506 {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_a13a73.WGS.T C3N-00852 CCRCC WGS tumor CPT0024660012 CPT0024660012.WholeGenome.RP-2158.bam 25566534105 BAM aligned CPTAC3 b211f9d4-adbe-4416-8f69-96f3b79e4947 15d783c6e41d8c0eaee87223ca97c404 {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_a13a73.WGS.T.hg38 C3N-00852 CCRCC WGS tumor CPT0024660012 00d1ca04-01fa-48e2-a122-12a1a4f070c1_wgs_gdc_realn.bam 77749785100 BAM harmonized CPTAC3 99f64d02-cceb-4da8-831d-05ab2431287d a735c7edd81044ff8a7594d4f85da51c {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_a13a73.WXS.T C3N-00852 CCRCC WXS tumor CPT0024660012 CPT0024660012.WholeExome.RP-1303.bam 24736057787 BAM aligned CPTAC3 bc12caf2-7e61-4eeb-92e2-b0d9f7a28b5d 64b626d5c127ca8696d57d43108dce27 {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_a13a73.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024660012 00d1ca04-01fa-48e2-a122-12a1a4f070c1_wxs_gdc_realn.bam 34055787473 BAM harmonized CPTAC3 65473bdd-b9cd-4529-a57d-f824b2778a98 de10bd09d541c81a4e3759dcf91e40ff {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_c9c8a86a.miRNA-Seq.S33_L005_R1.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024650009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGGCC_S33_L005_R1_001.unaln.bam 242478790 BAM S33_L005_R1 unaligned CPTAC3 a564cb2a-9ce1-4773-98cc-ded738f05ba3 cf2c496ff9753f5852aef3f68db9bf03 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_c9c8a86a.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024650009 a20a79b2-4125-4f51-a9fc-f0192d6f913b_mirnaseq_gdc_realn.bam 265851027 BAM harmonized CPTAC3 a1f10df5-6c34-4b87-9717-9a91f3b20de7 d2e71bb55c3a2060ad49421e958a5eb1 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_c9c8a86a.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.chimeric.gdc_realn.bam 190263159 BAM chimeric harmonized CPTAC3 9ef10366-b8e7-42cf-a41b-210dc1b7f025 65f8fb9db7aac43b7a7d70b1d995fd03 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_c9c8a86a.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.genomic.gdc_realn.bam 8506548884 BAM genomic harmonized CPTAC3 6b951d1b-2f84-4a7b-937b-d16235dbe2d0 83d2aae3a6c5d118bad57d99f54cdf1c {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_c9c8a86a.RNA-Seq.S45_L008_R1.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R1_001.fastq.gz 3984452183 FASTQ S45_L008_R1 unaligned CPTAC3 5d01f7ba-95a5-4f59-a2bd-35bd9eac516d 89877a623d63dae7d9e168c4c32327a8 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_c9c8a86a.RNA-Seq.S45_L008_R2.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R2_001.fastq.gz 4761749129 FASTQ S45_L008_R2 unaligned CPTAC3 17c99bea-d5f7-4049-8890-9ead17cddf4f f5cdc874090034b1241817712759bb40 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S45", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00852.DUP_c9c8a86a.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.transcriptome.gdc_realn.bam 11400714918 BAM transcriptome harmonized CPTAC3 d8666eae-343c-42b3-990c-b7f3e93a4e4f ee3dfb6b37bd7ed7a69ef6e81c7f718e {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00852.MethArray.Green.A C3N-00852 CCRCC Methylation_Array tissue_normal CPT0024680009 203027380024_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c455d9b4-e27f-430d-953e-ab94527dea9a c0d286fab3cb90b3aef856f81a9f5efa {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.MethArray.Green.T C3N-00852 CCRCC Methylation_Array tumor CPT0024670009 202176290147_R01C01_Grn.idat 13676215 IDAT Green NA CPTAC3 debb3bd8-aca6-411a-a4b8-c07a3d8c1526 8f6923a43a15b2d283f452d8700dc460 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor"} -C3N-00852.MethArray.Red.A C3N-00852 CCRCC Methylation_Array tissue_normal CPT0024680009 203027380024_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 dc64a0a2-277f-4f0f-beaa-aaac6bbd40ce 1d216eaf8347200210d7adfb5af8f8d4 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.MethArray.Red.T C3N-00852 CCRCC Methylation_Array tumor CPT0024670009 202176290147_R01C01_Red.idat 13676215 IDAT Red NA CPTAC3 1bacbb16-3eb6-4dbb-a247-5e9dc90b6d10 1cdca9eb357e24ed4d9d1481a9e657e7 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor"} -C3N-00852.miRNA-Seq.A.hg38 C3N-00852 CCRCC miRNA-Seq tissue_normal CPT0024680013 c8514bcf-57db-442b-b76d-8657982c6dc8_mirnaseq_gdc_realn.bam 270536571 BAM harmonized CPTAC3 d922c735-6034-46b8-a5df-2e9d40fdea43 16e5a6e6e865e5bb02f77489ae2b9024 {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.miRNA-Seq.S11_L006_R1.A C3N-00852 CCRCC miRNA-Seq tissue_normal CPT0024680013 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L006_R1_001.unaln.bam 246666855 BAM S11_L006_R1 unaligned CPTAC3 2ae9b9c3-e0e9-44b4-8c04-215fc797e7aa 9d85fa27e0e77130c42d1d120deaa129 {"aliquot_tag": "ALQ_c896b484", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.miRNA-Seq.S19_L003_R1.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024670006 180924_UNC31-K00269_0154_AHWTMLBBXX_GATCAG_S19_L003_R1_001.unaln.bam 214130020 BAM S19_L003_R1 unaligned CPTAC3 f3a5550a-175a-431e-a5ae-61c19addba72 3fded2c9887df1a826de4b7c54a1cb6b {"aliquot_tag": "ALQ_23b7e69b", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00852.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024670006 0567a339-a1ec-4a7e-a245-8574a9091cc1_mirnaseq_gdc_realn.bam 230942340 BAM harmonized CPTAC3 0f79ee27-e217-42bf-9b65-98a0a25f6f3f 24e0df55f364897ab376c6111fbb3011 {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor"} -C3N-00852.RNA-Seq.chimeric.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.chimeric.gdc_realn.bam 111124618 BAM chimeric harmonized CPTAC3 69783ff6-50ca-4149-9ecf-5d2af8d2248d 131d9c725d52d066aa898c2f8fda85f4 {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.chimeric.gdc_realn.bam 85179202 BAM chimeric harmonized CPTAC3 42ca7646-616f-48ed-88d2-f9c43e7b3798 1d901b87ff382964a212493d844b9388 {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor"} -C3N-00852.RNA-Seq.genomic.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.genomic.gdc_realn.bam 9581281489 BAM genomic harmonized CPTAC3 9cc62824-4b8a-4286-b721-d88c07093058 238b2b266d63f65abea11438e68a9015 {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.genomic.gdc_realn.bam 8555543802 BAM genomic harmonized CPTAC3 853f47ef-c22d-4d1a-ba52-dcb4abb6a602 aa3448dd5642e7d9ea0d6bde2371ca3a {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor"} -C3N-00852.RNA-Seq.S40_L008_R1.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R1_001.fastq.gz 3923360468 FASTQ S40_L008_R1 unaligned CPTAC3 98cbfe35-2028-4b35-b294-7908bd384217 dc5e746d8a140cd9d4533e5e31d48094 {"aliquot_tag": "ALQ_c896b484", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.RNA-Seq.S40_L008_R2.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R2_001.fastq.gz 4438310010 FASTQ S40_L008_R2 unaligned CPTAC3 3b929f29-a942-4894-8250-1f29c8bf68a2 826c76c31e7f58ea989f891f6f463ca9 {"aliquot_tag": "ALQ_c896b484", "sample": "S40", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.RNA-Seq.S4_L001_R1.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4265437093 FASTQ S4_L001_R1 unaligned CPTAC3 9f137d4e-815b-42a1-9cd9-e937abeebbab aa59da8caae7f02dcb0ff5cc1ed6cc30 {"aliquot_tag": "ALQ_23b7e69b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00852.RNA-Seq.S4_L001_R2.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4657233704 FASTQ S4_L001_R2 unaligned CPTAC3 14c88080-e7f7-4005-84a8-08b7c0bbdb1a 5300b7587d3686b62ec9a5256f3fc3a5 {"aliquot_tag": "ALQ_23b7e69b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00852.RNA-Seq.transcriptome.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.transcriptome.gdc_realn.bam 9088795037 BAM transcriptome harmonized CPTAC3 3f088125-75db-42e1-bd50-b6fe452d4948 f39538202afca9ec468df5bfd30110ed {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.transcriptome.gdc_realn.bam 12112016023 BAM transcriptome harmonized CPTAC3 a8dd08e7-599f-4f5b-aa3a-0f479a6e9b2e 52a483ad601539e6984be16242770831 {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor"} -C3N-00852.WGS.A C3N-00852 CCRCC WGS tissue_normal CPT0024680009 CPT0024680009.WholeGenome.RP-1303.bam 82131149308 BAM aligned CPTAC3 e4e32496-13d3-4eef-88d0-f12b14dc1032 1807bed71baad904acb2cef1b5f9f8e1 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.WGS.A.hg38 C3N-00852 CCRCC WGS tissue_normal CPT0024680009 bad0565e-7226-4406-b438-ad25656f1243_wgs_gdc_realn.bam 119189244258 BAM harmonized CPTAC3 197f9648-e218-4632-a40b-f93da885c977 1bda52e528bc66105ed9cd5880380168 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.WGS.N C3N-00852 CCRCC WGS blood_normal CPT0024740002 CPT0024740002.WholeGenome.RP-1303.bam 63963861586 BAM aligned CPTAC3 0903ff9e-a8cc-4ced-9d03-f8d018191fff 765348dd5f3f1cc0ed6084cd192c44de {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00852.WGS.N.hg38 C3N-00852 CCRCC WGS blood_normal CPT0024740002 85fedd41-5ca0-47c2-8d24-64e0c067178b_gdc_realn.bam 93250731753 BAM harmonized CPTAC3 f05c6f2a-62b3-4677-aa64-202a56044291 e850a4bc075e90545e4d3f392a64156e {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00852.WGS.T C3N-00852 CCRCC WGS tumor CPT0024670009 CPT0024670009.WholeGenome.RP-1303.bam 62216815540 BAM aligned CPTAC3 aa4f904c-ac25-43ac-870e-0359500ecab3 a72b05f9cc0c8296c687fb175ce461da {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor"} -C3N-00852.WGS.T.hg38 C3N-00852 CCRCC WGS tumor CPT0024670009 f9ac248b-a3c7-47f9-898e-8322e72b6b48_gdc_realn.bam 90986935611 BAM harmonized CPTAC3 860a20e9-ac3f-4648-9e59-9412f3b0eebb 908a855b06db225c4da05fd0afb61171 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor"} -C3N-00852.WXS.A C3N-00852 CCRCC WXS tissue_normal CPT0024680009 CPT0024680009.WholeExome.RP-1303.bam 27692691972 BAM aligned CPTAC3 792e0d30-95cb-4b50-9e32-b0ca32355957 3413df58a0cf11b98372b37449d4a408 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.WXS.A.hg38 C3N-00852 CCRCC WXS tissue_normal CPT0024680009 bad0565e-7226-4406-b438-ad25656f1243_wxs_gdc_realn.bam 37347719814 BAM harmonized CPTAC3 6635c748-3d17-4786-94f9-af50fd67c920 a4ba4e09c12fae1fbc7dc8c7a74c8125 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00852.WXS.N C3N-00852 CCRCC WXS blood_normal CPT0024740002 CPT0024740002.WholeExome.RP-1303.bam 23068087243 BAM aligned CPTAC3 55de5312-e9d9-4d8e-b772-baa4e90d84b4 33158780b510ccd293cae20b9e232509 {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00852.WXS.N.hg38 C3N-00852 CCRCC WXS blood_normal CPT0024740002 85fedd41-5ca0-47c2-8d24-64e0c067178b_gdc_realn.bam 31571603166 BAM harmonized CPTAC3 9107d71e-50fa-4099-aff1-40319ef93b2f ea3d4adbbe3666b6688dcb4381c4d655 {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal"} -C3N-00852.WXS.T C3N-00852 CCRCC WXS tumor CPT0024670009 CPT0024670009.WholeExome.RP-1303.bam 20682126060 BAM aligned CPTAC3 c5b1b709-a52e-474c-83d3-e5bef1c37351 ebf74f4c230bb371ee0dd02b3d7e8a86 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor"} -C3N-00852.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024670009 f9ac248b-a3c7-47f9-898e-8322e72b6b48_gdc_realn.bam 28220494250 BAM harmonized CPTAC3 6cc1f066-bd5a-40e4-931e-c0921cc4dc0e eadd4283f2d36608bfd97e344b23eea5 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor"} -C3N-00857.MethArray.Green.T C3N-00857 HNSCC Methylation_Array tumor CPT0094350010 202234380099_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 59d880f1-2082-46af-a4c6-7eb51925d43f cd34162ab23239db677bf9304e66a1f9 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor"} -C3N-00857.MethArray.Red.T C3N-00857 HNSCC Methylation_Array tumor CPT0094350010 202234380099_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 d0f6f6a1-4520-41bf-9dd8-ebd5e8743fc7 7f3b2ef62d7b105ae69de58ad6c441ea {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor"} -C3N-00857.miRNA-Seq.S36_L007_R1.T C3N-00857 HNSCC miRNA-Seq tumor CPT0094350007 180828_UNC32-K00270_0112_AHWTLNBBXX_CACCGG_S36_L007_R1_001.unaln.bam 210269048 BAM S36_L007_R1 unaligned CPTAC3 48acb609-a84c-48dd-81a3-928324118d77 c2b20f81faaff6cbfe33b51d896bdadb {"aliquot_tag": "ALQ_23d70888", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00857.miRNA-Seq.T.hg38 C3N-00857 HNSCC miRNA-Seq tumor CPT0094350007 c44d7d46-e227-468a-9b5b-30887ba7a6ad_mirnaseq_gdc_realn.bam 237951024 BAM harmonized CPTAC3 e9ea7136-543b-44dd-9765-d2deb6561878 e2b5300adc8408208265de934bf62e8c {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor"} -C3N-00857.RNA-Seq.chimeric.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.chimeric.gdc_realn.bam 43135948 BAM chimeric harmonized CPTAC3 00d0589d-575f-4542-91c3-05083aef9c74 9a62147a87d0d66f5bef3077c1cf4db3 {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor"} -C3N-00857.RNA-Seq.genomic.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.genomic.gdc_realn.bam 10452798427 BAM genomic harmonized CPTAC3 7afae0b2-d6c7-460d-855a-7f3103d38f7e 88805e259858f08040a2d02d9d38414f {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor"} -C3N-00857.RNA-Seq.S10_L003_R1.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R1_001.fastq.gz 4883453334 FASTQ S10_L003_R1 unaligned CPTAC3 f2f1e7cc-e192-4e23-adef-69eb17a72ce0 630139b9951fd04b1447e85fe19cb3f1 {"aliquot_tag": "ALQ_23d70888", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00857.RNA-Seq.S10_L003_R2.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R2_001.fastq.gz 5368333581 FASTQ S10_L003_R2 unaligned CPTAC3 c5211e48-be82-4d7a-b5a4-2aa8f3c94622 39f1daeba064cc6881c194d6783d58ec {"aliquot_tag": "ALQ_23d70888", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00857.RNA-Seq.transcriptome.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.transcriptome.gdc_realn.bam 12940249615 BAM transcriptome harmonized CPTAC3 d9261b28-d523-4940-ba4e-ceffdcd61350 233f50f895a1c7f75b63fb5794950fcc {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor"} -C3N-00857.WGS.N C3N-00857 HNSCC WGS blood_normal CPT0094410002 CPT0094410002.WholeGenome.RP-1303.bam 63264032177 BAM aligned CPTAC3 c0d16dc7-5a4d-4ccc-b8ed-2024c70163f2 4f7a6b6929b168202b43bccef8ca595b {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00857.WGS.N.hg38 C3N-00857 HNSCC WGS blood_normal CPT0094410002 ba31c45d-375b-4fc2-99dc-f4ae4dc7f11e_wgs_gdc_realn.bam 93711501307 BAM harmonized CPTAC3 5f50bf28-f365-48d9-b917-c4a7fa2febc1 19f0f8eef8816467334d5b2d8b74e99b {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00857.WGS.T C3N-00857 HNSCC WGS tumor CPT0094350010 CPT0094350010.WholeGenome.RP-1303.bam 64401502848 BAM aligned CPTAC3 9c0e00e0-f770-4c3f-b414-414ad966f71a 1d001e118c8cdb0c525ccc6843e30671 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor"} -C3N-00857.WGS.T.hg38 C3N-00857 HNSCC WGS tumor CPT0094350010 3a6fc1b2-040d-49e5-8d6c-dc393a07ce70_wgs_gdc_realn.bam 93727390521 BAM harmonized CPTAC3 f6de3537-9a0e-4570-9c08-5114018c3083 0256a3a06733a834e88fd1a4479018e1 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor"} -C3N-00857.WXS.N C3N-00857 HNSCC WXS blood_normal CPT0094410002 CPT0094410002.WholeExome.RP-1303.bam 41577025845 BAM aligned CPTAC3 35e496bb-b1d0-49f2-82de-7c1a337fdc0b ad16d39086d4ee1f3d63eeafbd8eec74 {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00857.WXS.N.hg38 C3N-00857 HNSCC WXS blood_normal CPT0094410002 ba31c45d-375b-4fc2-99dc-f4ae4dc7f11e_wxs_gdc_realn.bam 57203535624 BAM harmonized CPTAC3 8234d619-3cd8-4392-94ac-3cc201b27bd1 006972269ee6d145e492326861a0049e {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal"} -C3N-00857.WXS.T C3N-00857 HNSCC WXS tumor CPT0094350010 CPT0094350010.WholeExome.RP-1303.bam 43039319168 BAM aligned CPTAC3 ed29a55d-c6d2-4ff5-a934-8eacf8cc3980 243efcbab6c085faf28bd15d1111a8e3 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor"} -C3N-00857.WXS.T.hg38 C3N-00857 HNSCC WXS tumor CPT0094350010 3a6fc1b2-040d-49e5-8d6c-dc393a07ce70_wxs_gdc_realn.bam 60148926330 BAM harmonized CPTAC3 16242d95-b145-4204-8fbf-0d3190fa9745 06aa32074da06506319df71d978795f7 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor"} -C3N-00858.MethArray.Green.T C3N-00858 UCEC Methylation_Array tumor CPT0078320010 202184900110_R03C01_Grn.idat 13676256 IDAT Green NA CPTAC3 347e5dec-da9c-4d46-82fc-199ca59aa347 4205be97c9a8e52c31da727fa21bc591 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor"} -C3N-00858.MethArray.Red.T C3N-00858 UCEC Methylation_Array tumor CPT0078320010 202184900110_R03C01_Red.idat 13676256 IDAT Red NA CPTAC3 2e5a092f-0adc-4e78-93a0-04931595eafb b3fcd3a061a1d8f698369e8dedfe7682 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor"} -C3N-00858.miRNA-Seq.A.hg38 C3N-00858 UCEC miRNA-Seq tissue_normal CPT0078360006 619c315e-d577-4cda-80d9-b9a398af35a8_mirnaseq_gdc_realn.bam 262102901 BAM harmonized CPTAC3 bceb8a21-59be-4c22-84db-5d83f4266268 98b3c3b3a1bb6de469201a8ab8bbcae9 {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.miRNA-Seq.S12_L006_R1.A C3N-00858 UCEC miRNA-Seq tissue_normal CPT0078360006 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L006_R1_001.unaln.bam 226658774 BAM S12_L006_R1 unaligned CPTAC3 7b38ef1e-6b7f-426f-b424-3d5e85825593 b93b473968e1832b9fc2783c98401bda {"aliquot_tag": "ALQ_c15a3a88", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.miRNA-Seq.S12_L008_R1.T C3N-00858 UCEC miRNA-Seq tumor CPT0078320007 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L008_R1_001.unaln.bam 169888817 BAM S12_L008_R1 unaligned CPTAC3 3b0dad1b-74dc-44fe-b05e-24e991e5f1ce 5aab25fc5840f05539e6d09f466fb90c {"aliquot_tag": "ALQ_43ddacde", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00858.miRNA-Seq.T.hg38 C3N-00858 UCEC miRNA-Seq tumor CPT0078320007 768989ed-fb2e-457c-8e1c-ed8f89b3b53d_mirnaseq_gdc_realn.bam 187698807 BAM harmonized CPTAC3 d3bba150-cc5e-4f37-860c-6ef37b9971ba 8b5bde3a865f6621637feacada402c4c {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.chimeric.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.chimeric.gdc_realn.bam 73316720 BAM chimeric harmonized CPTAC3 5fc8108e-73df-4c32-b061-3a5548d46e08 878a148030663cc1a039f3d09fb0c074 {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.RNA-Seq.chimeric.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.chimeric.gdc_realn.bam 109851687 BAM chimeric harmonized CPTAC3 3576c0a1-9a71-430d-b922-e2c5cf21e785 5b5685361866cc45fa935c3cab554b7a {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.chimeric.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.chimeric.gdc_realn.bam 123692825 BAM chimeric harmonized CPTAC3 024a2932-c535-4ac6-833f-cd2a09b6b03a ec5dd4ccc141f2568299ba026f983d58 {"aliquot_tag": "ALQ_143197", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.genomic.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.genomic.gdc_realn.bam 8934640199 BAM genomic harmonized CPTAC3 b90327f9-d9aa-4091-b7c2-732518c8bef5 0cc7d71e3045db953d692c08253c8318 {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.RNA-Seq.genomic.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.genomic.gdc_realn.bam 7837783210 BAM genomic harmonized CPTAC3 0b31f5cf-52ce-4875-abc1-1b7aa04b092a c0b33e5a9af5b71a5c985b41328509ca {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.genomic.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.genomic.gdc_realn.bam 5582539715 BAM genomic harmonized CPTAC3 0772a03c-a7f6-400e-9274-54daedde108d 8c28f28f04d7eaef203b174c95ed05ee {"aliquot_tag": "ALQ_143197", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.S18_L006_R1.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R1_001.fastq.gz 3764827164 FASTQ S18_L006_R1 unaligned CPTAC3 1a17a35c-466d-4a23-aee2-04b09c784e2a 8c642df0eb3585f5a0b74dee8b807355 {"aliquot_tag": "ALQ_43ddacde", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.S18_L006_R2.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R2_001.fastq.gz 3980424909 FASTQ S18_L006_R2 unaligned CPTAC3 1a561b74-0af0-4d52-9288-9fa08c5d2729 f2fa91083756613edddd96ce3db103d5 {"aliquot_tag": "ALQ_43ddacde", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.S41_L008_R1.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R1_001.fastq.gz 4086730397 FASTQ S41_L008_R1 unaligned CPTAC3 2bb35dfa-8915-4f44-a7f3-309bee055f37 28c00169301f5222020b2da31b0ebe68 {"aliquot_tag": "ALQ_c15a3a88", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.RNA-Seq.S41_L008_R2.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R2_001.fastq.gz 4447801011 FASTQ S41_L008_R2 unaligned CPTAC3 c3a727a2-3121-46f4-8640-749db0e909dc 43876bcaa405ec110df3aad851ac670c {"aliquot_tag": "ALQ_c15a3a88", "sample": "S41", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.RNA-Seq.S91_R1.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R1_001.fastq.gz 3469536062 FASTQ S91_R1 unaligned CPTAC3 eb12799c-ad09-4416-b018-8d6396a44280 611c53b5b5869105b9ec8d00d4485c2d {"aliquot_tag": "ALQ_143197", "sample": "S91", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.S91_R2.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R2_001.fastq.gz 3627597888 FASTQ S91_R2 unaligned CPTAC3 a75cbac1-bbc0-4104-b43b-09d7ffc50d81 bb70a5160134d76f5bc7d3d77f8c89a5 {"aliquot_tag": "ALQ_143197", "sample": "S91", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.transcriptome.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.transcriptome.gdc_realn.bam 10877374454 BAM transcriptome harmonized CPTAC3 c8af88a7-895a-485d-986b-54198afecb78 be88f5a70f56ad22bbee58edf3249b7f {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.RNA-Seq.transcriptome.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.transcriptome.gdc_realn.bam 9282282929 BAM transcriptome harmonized CPTAC3 36438c2c-5343-4c18-8cd7-3051b2148af4 3e5f9b6f5d87574f741cb06af85a5850 {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor"} -C3N-00858.RNA-Seq.transcriptome.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.transcriptome.gdc_realn.bam 3498167891 BAM transcriptome harmonized CPTAC3 2536a3d3-2f9d-402f-bb0e-8d896017d8e0 4bfa050d95e15ba49cd125991b8c59d5 {"aliquot_tag": "ALQ_143197", "gdc_sample_type": "Primary Tumor"} -C3N-00858.WGS.A C3N-00858 UCEC WGS tissue_normal CPT0078360009 CPT0078360009.WholeGenome.RP-1303.bam 56506640424 BAM aligned CPTAC3 7434aa4c-cd17-4080-9e89-f5ca44b1e430 1b65e1cf66a7d202c6ba8708c58f30f9 {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.WGS.A.hg38 C3N-00858 UCEC WGS tissue_normal CPT0078360009 6c7c0305-35b0-42c0-8533-44b170b53ccd_wgs_gdc_realn.bam 81540496024 BAM harmonized CPTAC3 e3e72f8f-399d-46f6-b469-94fec8e47aac 22dc4bc3eeeaa80200fb7823134c7528 {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.WGS.N C3N-00858 UCEC WGS blood_normal CPT0078420002 CPT0078420002.WholeGenome.RP-1303.bam 74524744064 BAM aligned CPTAC3 e9b8ebee-daff-405b-a17e-33f230c39e80 ba9cdec7cf3dd7ae413528f6d7430a31 {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00858.WGS.N.hg38 C3N-00858 UCEC WGS blood_normal CPT0078420002 bdc38930-0dd6-4f39-a41d-56574c4b93ea_gdc_realn.bam 109505995795 BAM harmonized CPTAC3 c00380d4-0e17-4a1f-afdf-f94329078eaf 6383219f9085007bd2f92aef738bf7bf {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00858.WGS.T C3N-00858 UCEC WGS tumor CPT0078320010 CPT0078320010.WholeGenome.RP-1303.bam 90430492119 BAM aligned CPTAC3 5fa4be34-928e-48c1-b986-d2df0adf5903 1571a72bb77b3a9724bc43dc333d5fd0 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor"} -C3N-00858.WGS.T.hg38 C3N-00858 UCEC WGS tumor CPT0078320010 b93f9712-3ac1-4bf5-b4c0-a3f584dc872a_gdc_realn.bam 139853903027 BAM harmonized CPTAC3 4d80e3cb-84e1-405a-a6e0-3e22eef87513 1d84e46d5d5bf632e98db184458e3f4e {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor"} -C3N-00858.WXS.A C3N-00858 UCEC WXS tissue_normal CPT0078360009 CPT0078360009.WholeExome.RP-1303.bam 33183152116 BAM aligned CPTAC3 1a31fe5f-b895-46a4-9b30-5f9533d97f77 d08e3b3ae08026f09952f5c641d4095f {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.WXS.A.hg38 C3N-00858 UCEC WXS tissue_normal CPT0078360009 6c7c0305-35b0-42c0-8533-44b170b53ccd_wxs_gdc_realn.bam 44629769569 BAM harmonized CPTAC3 21c4af58-556c-434f-aec4-745057a9e2c0 d813f2a59bc33fce7b398367acea905a {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00858.WXS.N C3N-00858 UCEC WXS blood_normal CPT0078420002 CPT0078420002.WholeExome.RP-1303.bam 26625504862 BAM aligned CPTAC3 47249bc4-3efc-4e44-970a-0542ab7f1baf 7368743a822e7706d7eec62cebcba919 {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00858.WXS.N.hg38 C3N-00858 UCEC WXS blood_normal CPT0078420002 bdc38930-0dd6-4f39-a41d-56574c4b93ea_gdc_realn.bam 35790917061 BAM harmonized CPTAC3 310f8751-c639-4b2e-86a2-5599a7e37d9d 14fddc29d0696a0a81d0fa23dc5ed7d3 {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-00858.WXS.T C3N-00858 UCEC WXS tumor CPT0078320010 CPT0078320010.WholeExome.RP-1303.bam 28147519369 BAM aligned CPTAC3 6fa84d36-167b-43b7-b63d-5a6acc4ef00f 3d6c6fc0e330075cdb209d66b06da1f5 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor"} -C3N-00858.WXS.T.hg38 C3N-00858 UCEC WXS tumor CPT0078320010 b93f9712-3ac1-4bf5-b4c0-a3f584dc872a_gdc_realn.bam 39020899393 BAM harmonized CPTAC3 abf58596-7554-4be7-bd99-2b0e02a40d41 8b09fd8b8b544235ece7f6ad150111dc {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor"} -C3N-00859.MethArray.Green.T C3N-00859 UCEC Methylation_Array tumor CPT0116010007 203219650100_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2cfef16b-7b91-4d5a-9d4d-7200c6e9c605 cc8bf3baca71e370bc451b9caaebbb61 {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor"} -C3N-00859.MethArray.Red.T C3N-00859 UCEC Methylation_Array tumor CPT0116010007 203219650100_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 67cd971b-833d-4916-8747-7e4932cef653 8cfde412164fbb8df2385b8d7923a6d4 {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor"} -C3N-00859.miRNA-Seq.A.hg38 C3N-00859 UCEC miRNA-Seq tissue_normal CPT0116040009 d15ef2c3-3683-4e72-a21a-3e64ccdad6dd_mirnaseq_gdc_realn.bam 214842095 BAM harmonized CPTAC3 cd523a00-c8c7-400e-a499-f8f1747f348a d66074f053a668eda2febf8ad9802b8b {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.miRNA-Seq.S42_L003_R1.T C3N-00859 UCEC miRNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0176_AHYGLVBBXX_TAATCG_S42_L003_R1_001.unaln.bam 198072320 BAM S42_L003_R1 unaligned CPTAC3 d2f17c51-83fa-46e4-83fc-3c316b081219 24eb4b6e0c6ca4a1b64e478c00778690 {"aliquot_tag": "ALQ_84bd66db", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00859.miRNA-Seq.S42_L008_R1.A C3N-00859 UCEC miRNA-Seq tissue_normal CPT0116040009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L008_R1_001.unaln.bam 186273281 BAM S42_L008_R1 unaligned CPTAC3 29760a76-064e-48c5-b03f-3373c76f314b fd1c1e08d1107083c458ff54ea656fac {"aliquot_tag": "ALQ_2c9a604e", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.miRNA-Seq.T.hg38 C3N-00859 UCEC miRNA-Seq tumor CPT0116010010 b3fa1c9c-2198-4cdd-a6e1-f8d92d7432ec_mirnaseq_gdc_realn.bam 225112197 BAM harmonized CPTAC3 bcbded0b-ca9c-4074-9c55-57c6173ea5e3 c8235ce2039a5a05bdebfaf9b4ce3ee2 {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.chimeric.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.chimeric.gdc_realn.bam 38175527 BAM chimeric harmonized CPTAC3 1496b73e-b49a-4e0b-b2f7-5d7c60c962d0 ae692f7323db7cc8477f5a89181d643b {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.RNA-Seq.chimeric.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.chimeric.gdc_realn.bam 32470428 BAM chimeric harmonized CPTAC3 84748585-a47c-4faf-ab9f-66e5ba0ca2bb 4aab9bae7183e771589121de5468a230 {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.chimeric.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.chimeric.gdc_realn.bam 257506137 BAM chimeric harmonized CPTAC3 2b834fa3-d0e0-4eb2-987a-6900e4dff374 0d177f8f0c021d174ee52f1b990e4434 {"aliquot_tag": "ALQ_3ec844f2", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.genomic.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.genomic.gdc_realn.bam 9171954274 BAM genomic harmonized CPTAC3 a6eb01e3-8183-46a3-be0f-ca47d8e9ee88 5b0dd00f4980d478338a9fb6d1c72256 {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.RNA-Seq.genomic.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.genomic.gdc_realn.bam 9563489939 BAM genomic harmonized CPTAC3 849d8f9f-894d-457e-81a0-882c9f77d9e0 c1af93428b25867f19010a97e5424e3a {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.genomic.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.genomic.gdc_realn.bam 12148877849 BAM genomic harmonized CPTAC3 96a63629-a52d-4e6d-bd54-17a148bdf35a e2983a77522cf90b8e888f47b686cdb3 {"aliquot_tag": "ALQ_3ec844f2", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.S19_L008_R1.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R1_001.fastq.gz 4222001969 FASTQ S19_L008_R1 unaligned CPTAC3 425c048c-b618-476a-aa1e-70ca92626d3a 6a354a88a87e1becae42aa8041c168be {"aliquot_tag": "ALQ_2c9a604e", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.RNA-Seq.S19_L008_R2.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R2_001.fastq.gz 4378688447 FASTQ S19_L008_R2 unaligned CPTAC3 ad36bd5f-4cee-4b18-8fe0-a6208f6bfe40 d7e7b2855e97ff7791e225d32519837b {"aliquot_tag": "ALQ_2c9a604e", "sample": "S19", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.RNA-Seq.S22_L008_R1.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R1_001.fastq.gz 4335261636 FASTQ S22_L008_R1 unaligned CPTAC3 8dd7f6fe-7301-4f05-9c51-09fa093615c6 403ddc0bedf9063ae2ed0e24cd9c2948 {"aliquot_tag": "ALQ_84bd66db", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.S22_L008_R2.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R2_001.fastq.gz 4343390030 FASTQ S22_L008_R2 unaligned CPTAC3 4bf41836-12db-4818-8d67-8993e64fba01 4dbe9cd5d3ae4bc171ab0c55b37b6a01 {"aliquot_tag": "ALQ_84bd66db", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.S27_R1.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R1_001.fastq.gz 7350883379 FASTQ S27_R1 unaligned CPTAC3 3d9db123-9d27-4026-a591-fae7284379e8 e26782f25762592e5df59adad4c4c7c6 {"aliquot_tag": "ALQ_3ec844f2", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.S27_R2.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R2_001.fastq.gz 7481981511 FASTQ S27_R2 unaligned CPTAC3 6ee0a228-39c7-453e-b81f-041e9bc3888d 530260af8473d8cd7c43057372e66bb4 {"aliquot_tag": "ALQ_3ec844f2", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.transcriptome.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.transcriptome.gdc_realn.bam 9754540480 BAM transcriptome harmonized CPTAC3 aba4cc76-7552-48e9-baf1-cb79bf4c2669 9ed2866ba72dd71e0dc6062dd6cff44e {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.RNA-Seq.transcriptome.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.transcriptome.gdc_realn.bam 10950295193 BAM transcriptome harmonized CPTAC3 668fa6aa-9b48-47c1-8cdb-0c58708beaba 47148e2bacea255a33b7ad49b8757d8e {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor"} -C3N-00859.RNA-Seq.transcriptome.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.transcriptome.gdc_realn.bam 5498285387 BAM transcriptome harmonized CPTAC3 79aa48c5-805d-4012-9fa7-784bfb8a058c 8f0caee9f100f1fc4122bf3239ecc025 {"aliquot_tag": "ALQ_3ec844f2", "gdc_sample_type": "Primary Tumor"} -C3N-00859.WGS.N C3N-00859 UCEC WGS blood_normal CPT0116130002 CPT0116130002.WholeGenome.RP-1303.bam 53147790036 BAM aligned CPTAC3 55b92604-1824-45e7-916a-33067953098d ede2b6321a8dd3fbbe5959207eeb3577 {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal"} -C3N-00859.WGS.N.hg38 C3N-00859 UCEC WGS blood_normal CPT0116130002 c6d7d55c-c04f-46b9-bc77-75ae1b1c2176_wgs_gdc_realn.bam 77971783546 BAM harmonized CPTAC3 3a08cf67-641a-4566-b6ee-b76de4b2b28c 92208f666147b24bf5370de19919a24f {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal"} -C3N-00859.WGS.T C3N-00859 UCEC WGS tumor CPT0116010007 CPT0116010007.WholeGenome.RP-1303.bam 58473534326 BAM aligned CPTAC3 14a601cb-538e-477b-8d5d-90b34e70a53d f5928ad04386dd3fa21ed4b00ca3325f {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor"} -C3N-00859.WGS.T.hg38 C3N-00859 UCEC WGS tumor CPT0116010007 b40a74bb-9918-4ade-a542-5b85fa8744c3_wgs_gdc_realn.bam 84285855604 BAM harmonized CPTAC3 6c552b08-bda0-4409-bf3b-5c82441db208 a6c3b6b3a9ca8b3bc3c10faf0c008d05 {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor"} -C3N-00859.WXS.A C3N-00859 UCEC WXS tissue_normal CPT0116040006 CPT0116040006.WholeExome.RP-1303.bam 25815960816 BAM aligned CPTAC3 39eddfd9-8dba-49d7-aa1d-b347842aefa9 0841c9beed116ad5dd485521116f9222 {"aliquot_tag": "ALQ_bc257ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.WXS.A.hg38 C3N-00859 UCEC WXS tissue_normal CPT0116040006 bf91ffec-4f43-4929-8d81-70010d2fbbc4_wxs_gdc_realn.bam 35288422952 BAM harmonized CPTAC3 9f76e921-d4c8-45d7-9665-d57156a20994 8ff7cf9503df75d4cc43a1d857ffe3e5 {"aliquot_tag": "ALQ_bc257ddf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00859.WXS.N C3N-00859 UCEC WXS blood_normal CPT0116130002 CPT0116130002.WholeExome.RP-1303.bam 31375531704 BAM aligned CPTAC3 18b8e01c-05a0-4068-a4b6-55c8a0a4c811 952617cb440eb225fab33c0649c9e98f {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal"} -C3N-00859.WXS.N.hg38 C3N-00859 UCEC WXS blood_normal CPT0116130002 c6d7d55c-c04f-46b9-bc77-75ae1b1c2176_wxs_gdc_realn.bam 43058589399 BAM harmonized CPTAC3 b360437c-f57e-48c0-8a1e-e2b76b7679ea bb6dd076357b3ab94b3a79036fafe877 {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal"} -C3N-00859.WXS.T C3N-00859 UCEC WXS tumor CPT0116010007 CPT0116010007.WholeExome.RP-1303.bam 21577093539 BAM aligned CPTAC3 158c416e-8b3b-4119-bf65-976d23d785fa 6c5c2da2aea073fc1026e391bd1a196b {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor"} -C3N-00859.WXS.T.hg38 C3N-00859 UCEC WXS tumor CPT0116010007 b40a74bb-9918-4ade-a542-5b85fa8744c3_wxs_gdc_realn.bam 30170092460 BAM harmonized CPTAC3 218e4969-24a1-4df5-8101-fdc92797c225 bae0cb0515b557a85be74ee82d0d883f {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor"} -C3N-00860.MethArray.Green.T C3N-00860 UCEC Methylation_Array tumor CPT0116140007 203219650174_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a78e64fa-8792-429d-b06b-55e89d67861e 1941656bb3854c5df45162c89a63fe30 {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor"} -C3N-00860.MethArray.Red.T C3N-00860 UCEC Methylation_Array tumor CPT0116140007 203219650174_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 69cb4b8c-1aa4-4e4b-962e-99678215590f 4d6a6172eea50efce94486565f308c6f {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor"} -C3N-00860.miRNA-Seq.S43_L003_R1.T C3N-00860 UCEC miRNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0176_AHYGLVBBXX_TACAGC_S43_L003_R1_001.unaln.bam 196943373 BAM S43_L003_R1 unaligned CPTAC3 15e87dcd-158c-4323-885a-ba012c0566ba 1103670018eff28e0cba322d475ccd5a {"aliquot_tag": "ALQ_87013a0e", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00860.miRNA-Seq.T.hg38 C3N-00860 UCEC miRNA-Seq tumor CPT0116140010 e77c1d27-e43c-416f-a032-25c268f91b31_mirnaseq_gdc_realn.bam 222380510 BAM harmonized CPTAC3 d5b533a5-5dcd-4a6a-9451-c2d846a134be 8d4d47af0341da0be5df7a98a74a184d {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.chimeric.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.chimeric.gdc_realn.bam 30754581 BAM chimeric harmonized CPTAC3 28d2a951-00ea-4153-a2bb-89246b5cfb58 c30eb52c0e5d273cb2bb0ba93a6bc5c7 {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.chimeric.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.chimeric.gdc_realn.bam 116837974 BAM chimeric harmonized CPTAC3 83ea41ac-83fc-4215-bc5f-ffaf8a0853bb 1f8ff1eb60fcad5c868e4e2c4b477bf4 {"aliquot_tag": "ALQ_f628cb82", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.genomic.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.genomic.gdc_realn.bam 8107137531 BAM genomic harmonized CPTAC3 5021b258-3b49-4075-8feb-48f1b662a303 3eede0f07c730faa5686adda7aece2d6 {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.genomic.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.genomic.gdc_realn.bam 7239920172 BAM genomic harmonized CPTAC3 ebaa4998-fe87-4c67-97eb-fe14c00d6391 764b813bfaf8115444346cedd6a46208 {"aliquot_tag": "ALQ_f628cb82", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.S21_L008_R1.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R1_001.fastq.gz 3852657370 FASTQ S21_L008_R1 unaligned CPTAC3 936067aa-6f2a-4779-af40-62508e7c1313 6a70d96fd66cfbd78aafc39a3ef165e3 {"aliquot_tag": "ALQ_87013a0e", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.S21_L008_R2.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R2_001.fastq.gz 3959297329 FASTQ S21_L008_R2 unaligned CPTAC3 2c131676-90dd-41f3-b774-4b3e746150cc e3775bd1e60f892b64a4450b93c38e29 {"aliquot_tag": "ALQ_87013a0e", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.S82_R1.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R1_001.fastq.gz 6093621596 FASTQ S82_R1 unaligned CPTAC3 e422f397-cd60-4c4f-91c2-f0265b575ac3 3abb5c757bdb986ae3565b7a38f1607c {"aliquot_tag": "ALQ_f628cb82", "sample": "S82", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.S82_R2.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R2_001.fastq.gz 6281335918 FASTQ S82_R2 unaligned CPTAC3 72732b42-e9fe-454b-a48d-2032641d749f 02d7acf531ae7271156e60e0878141e8 {"aliquot_tag": "ALQ_f628cb82", "sample": "S82", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.transcriptome.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.transcriptome.gdc_realn.bam 9030897892 BAM transcriptome harmonized CPTAC3 16f3bb21-286a-4b35-8c17-17e54ddf6b8a b5119748127650fb2a8f9d1e5fe7ba62 {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor"} -C3N-00860.RNA-Seq.transcriptome.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.transcriptome.gdc_realn.bam 4278049900 BAM transcriptome harmonized CPTAC3 3737640e-70ae-4cd3-983f-6f166ec9af64 2de78eb890a961766253a5349b4b54fd {"aliquot_tag": "ALQ_f628cb82", "gdc_sample_type": "Primary Tumor"} -C3N-00860.WGS.N C3N-00860 UCEC WGS blood_normal CPT0116240002 CPT0116240002.WholeGenome.RP-1303.bam 64399380983 BAM aligned CPTAC3 145ef959-94ac-49dc-a095-dd17e6bbf65c 232192559883e7c45d11234a46d28c97 {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00860.WGS.N.hg38 C3N-00860 UCEC WGS blood_normal CPT0116240002 7c58c0de-13cd-4da1-8905-59313817c99c_wgs_gdc_realn.bam 94227137464 BAM harmonized CPTAC3 11ccbcdc-bf45-4679-97ee-0132bb718f11 cfc142287b9ec14e6036ce30d62f7181 {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00860.WGS.T C3N-00860 UCEC WGS tumor CPT0116140007 CPT0116140007.WholeGenome.RP-1303.bam 54046227118 BAM aligned CPTAC3 7d060781-b1e4-4a50-a5d5-26fbfc357e8b 10f8bf4589da002f7a82cca956547dab {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor"} -C3N-00860.WGS.T.hg38 C3N-00860 UCEC WGS tumor CPT0116140007 f992f542-003e-4700-ac85-37a8ca418a48_wgs_gdc_realn.bam 78953032782 BAM harmonized CPTAC3 862f4c81-5d9e-433f-8529-cb4369f09782 75e0cc1bb6a707f3487d9f38b392a435 {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor"} -C3N-00860.WXS.N C3N-00860 UCEC WXS blood_normal CPT0116240002 CPT0116240002.WholeExome.RP-1303.bam 19355004092 BAM aligned CPTAC3 07e9d994-b649-4872-922f-badffdf0d69b 2230a669049f0835da9ffb0c7213d424 {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00860.WXS.N.hg38 C3N-00860 UCEC WXS blood_normal CPT0116240002 7c58c0de-13cd-4da1-8905-59313817c99c_wxs_gdc_realn.bam 26445024448 BAM harmonized CPTAC3 790a38d1-727b-4f18-9a65-986a4c6b543a 4512c5bb16d2bb2e11882ab02332a3cb {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-00860.WXS.T C3N-00860 UCEC WXS tumor CPT0116140007 CPT0116140007.WholeExome.RP-1303.bam 35988578561 BAM aligned CPTAC3 5860a15f-4c71-4be7-b907-b02bbe9e740c b1618408207e743d83360f19215501d3 {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor"} -C3N-00860.WXS.T.hg38 C3N-00860 UCEC WXS tumor CPT0116140007 f992f542-003e-4700-ac85-37a8ca418a48_wxs_gdc_realn.bam 50345512612 BAM harmonized CPTAC3 c9d9fb40-aadd-447a-ad18-8cd6c3440e08 8ad2855840ae339d02220ab59c86261a {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor"} -C3N-00866.MethArray.Green.T C3N-00866 UCEC Methylation_Array tumor CPT0063090009 202178770100_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 869fece6-88d8-4f53-9129-5485d470e62f 9cf150c6aa8999d8b700fe241d50e0a3 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor"} -C3N-00866.MethArray.Red.T C3N-00866 UCEC Methylation_Array tumor CPT0063090009 202178770100_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 3a00c09a-de7b-48b3-8ee0-3f4dc55702ee 408d466c3a10049c48fa65dd5e6da73a {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor"} -C3N-00866.miRNA-Seq.A.hg38 C3N-00866 UCEC miRNA-Seq tissue_normal CPT0063110004 f537006e-72e3-4379-9a0e-602f64b86278_mirnaseq_gdc_realn.bam 232173813 BAM harmonized CPTAC3 7e665751-419e-4b8f-af6f-51e06b706e80 61ce2afdd67abd1107be6366d96110ac {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00866.miRNA-Seq.S17_L003_R1.T C3N-00866 UCEC miRNA-Seq tumor CPT0063090006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTTCC_S17_L003_R1_001.unaln.bam 172906655 BAM S17_L003_R1 unaligned CPTAC3 bccfbfb0-0353-4856-9fde-87b79d4aa45b be05994135334a5ae8130c2ee0e9a882 {"aliquot_tag": "ALQ_b338b93", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00866.miRNA-Seq.S1_L005_R1.A C3N-00866 UCEC miRNA-Seq tissue_normal CPT0063110004 181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L005_R1_001.unaln.bam 197479292 BAM S1_L005_R1 unaligned CPTAC3 ce4a48ac-acc6-4e19-99ca-f854bf1c1d5b b624414aefd9789c97492a4d38fb2414 {"aliquot_tag": "ALQ_1e1172db", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00866.miRNA-Seq.T.hg38 C3N-00866 UCEC miRNA-Seq tumor CPT0063090006 7c672613-2a8a-4cbf-9184-27334b900310_mirnaseq_gdc_realn.bam 184125657 BAM harmonized CPTAC3 1c759d84-2410-428b-b39d-65d0e9bd2d14 e4de14e205e1ef03dd54e515ec005655 {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.chimeric.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.chimeric.gdc_realn.bam 72093749 BAM chimeric harmonized CPTAC3 fc4a9d26-2e95-450a-ae2a-4cc0659ae552 f7a4b204538b4eb23a8924d8a4882ec0 {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00866.RNA-Seq.chimeric.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.chimeric.gdc_realn.bam 31001823 BAM chimeric harmonized CPTAC3 5d553392-bb38-4b57-9a3f-980d5aaf40ea dfc8380cd1a9a5cad0b6cddc52ed81f6 {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.chimeric.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.chimeric.gdc_realn.bam 378253089 BAM chimeric harmonized CPTAC3 9d902945-8e22-4e20-a39e-5caa6c2ab445 e695efe08068fcfa208211fa9a4c01d1 {"aliquot_tag": "ALQ_14bbd534", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.genomic.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.genomic.gdc_realn.bam 8227016829 BAM genomic harmonized CPTAC3 390664b5-b265-4638-9ff4-620ef4f858c8 0651bed40623b1b94e28d6d7bf09c1a4 {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00866.RNA-Seq.genomic.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.genomic.gdc_realn.bam 8651837509 BAM genomic harmonized CPTAC3 2b87693e-4bec-42b3-b03f-581746e6294b 7663194d003cfa51fd3ed4fc9539f56e {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.genomic.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.genomic.gdc_realn.bam 18852988763 BAM genomic harmonized CPTAC3 72845ff6-2c43-442b-9732-e605d0374575 4774d938c094cb42000929c0eaa92fd1 {"aliquot_tag": "ALQ_14bbd534", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.S17_L005_R1.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R1_001.fastq.gz 4083147786 FASTQ S17_L005_R1 unaligned CPTAC3 af76a34d-cc47-4d15-a276-60e3923b3975 89ef8abbbda4b42701275353d5e5d9df {"aliquot_tag": "ALQ_1e1172db", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00866.RNA-Seq.S17_L005_R2.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R2_001.fastq.gz 3908032870 FASTQ S17_L005_R2 unaligned CPTAC3 335d84c6-609f-4669-ae8c-2242a24a4fa8 0a9443bc770bd40275305da08c923fdc {"aliquot_tag": "ALQ_1e1172db", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00866.RNA-Seq.S51_R1.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R1_001.fastq.gz 12607998362 FASTQ S51_R1 unaligned CPTAC3 5a754c59-3b24-4bf0-a3a8-a4a780c68791 b0cdd6c71ad91b2ed84f97257b18db58 {"aliquot_tag": "ALQ_14bbd534", "sample": "S51", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.S51_R2.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R2_001.fastq.gz 13227275490 FASTQ S51_R2 unaligned CPTAC3 234830ec-bd6e-46ec-90ea-ada6c267176e 722d2e59df197d13904761a611af8a35 {"aliquot_tag": "ALQ_14bbd534", "sample": "S51", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.S8_L002_R1.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3972395204 FASTQ S8_L002_R1 unaligned CPTAC3 99455b1b-f110-46ef-a03e-be651c28a0bd 104cdf258fb2a43943130acdaad08c21 {"aliquot_tag": "ALQ_b338b93", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.S8_L002_R2.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4257107133 FASTQ S8_L002_R2 unaligned CPTAC3 8323759d-cdc4-481c-8518-f170b5a87082 2e6fc941e03a5728d9828a4b6a14b49e {"aliquot_tag": "ALQ_b338b93", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.transcriptome.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.transcriptome.gdc_realn.bam 9849650483 BAM transcriptome harmonized CPTAC3 117329ea-c7ba-447a-acb6-2b0a5b45bf1c e44e221bc0b79fb164dcfcbd125c1095 {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00866.RNA-Seq.transcriptome.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.transcriptome.gdc_realn.bam 7779974912 BAM transcriptome harmonized CPTAC3 9db68238-f0c7-4e31-9c87-3989a634269d 609affeb981ee3d6edfa0afe91439b3f {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor"} -C3N-00866.RNA-Seq.transcriptome.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.transcriptome.gdc_realn.bam 11025174347 BAM transcriptome harmonized CPTAC3 a4d0c34a-ec52-41a1-9c09-b5daa226c83f 186d79e1e0c9575e2ef8c2116183b346 {"aliquot_tag": "ALQ_14bbd534", "gdc_sample_type": "Primary Tumor"} -C3N-00866.WGS.N C3N-00866 UCEC WGS blood_normal CPT0063210002 CPT0063210002.WholeGenome.RP-1303.bam 71157671685 BAM aligned CPTAC3 d3c0841e-9602-4cb2-9d28-7ce2c79e8e61 f022065290148a17565df4af2c9ae46a {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal"} -C3N-00866.WGS.N.hg38 C3N-00866 UCEC WGS blood_normal CPT0063210002 5a955d91-4992-4986-a78b-a2f80f455ea1_gdc_realn.bam 113783908681 BAM harmonized CPTAC3 3cc9b549-bbac-48cc-8a82-5486203bf83d 263d7920ae3725bbe50bf39a59a2ff89 {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal"} -C3N-00866.WGS.T C3N-00866 UCEC WGS tumor CPT0063090009 CPT0063090009.WholeGenome.RP-1303.bam 68887603626 BAM aligned CPTAC3 c344cec3-e9ee-43f1-823c-e1993b4ae46d 23d6091d6eae44d6356b277fd9a1b1a2 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor"} -C3N-00866.WGS.T.hg38 C3N-00866 UCEC WGS tumor CPT0063090009 6c9f01df-2bc2-405e-b94c-a673cde4f948_gdc_realn.bam 103052108860 BAM harmonized CPTAC3 c825581d-0f15-4602-9895-fc171e032585 1ce83a3ec6ca94e45bd571c858f1befb {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor"} -C3N-00866.WXS.N C3N-00866 UCEC WXS blood_normal CPT0063210002 CPT0063210002.WholeExome.RP-1303.bam 24115087578 BAM aligned CPTAC3 5e2f889e-d261-442f-83bb-63f151bef53e 141fd024bbbb3d31b4b57466c936f097 {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal"} -C3N-00866.WXS.N.hg38 C3N-00866 UCEC WXS blood_normal CPT0063210002 5a955d91-4992-4986-a78b-a2f80f455ea1_gdc_realn.bam 32612227007 BAM harmonized CPTAC3 ee7f6e8b-6389-4391-9e6a-5cdc220bc39b 393c6719fe946bc2c26a8c5ede8f4343 {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal"} -C3N-00866.WXS.T C3N-00866 UCEC WXS tumor CPT0063090009 CPT0063090009.WholeExome.RP-1303.bam 29131897228 BAM aligned CPTAC3 1b01d1ea-eed0-4d42-903b-f811ba2ec579 e04effbf9e66a8b583ce7330741c02b7 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor"} -C3N-00866.WXS.T.hg38 C3N-00866 UCEC WXS tumor CPT0063090009 6c9f01df-2bc2-405e-b94c-a673cde4f948_gdc_realn.bam 39888639438 BAM harmonized CPTAC3 ad5ee7c0-c8bd-4cab-b438-7af8fa0c9946 c816dc19fe3e9ec647b13fe742a86040 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor"} -C3N-00871.MethArray.Green.T C3N-00871 HNSCC Methylation_Array tumor CPT0094420010 202234360029_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 704f0f19-3d38-4e47-983f-8c0e3bd0b66c b108932218a02d2ea25a0c76f4c0323f {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor"} -C3N-00871.MethArray.Red.T C3N-00871 HNSCC Methylation_Array tumor CPT0094420010 202234360029_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 48411d64-8284-44a7-ac85-578b3b185d9a 55c9eadc732c2f567be1b3bb7c48f376 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor"} -C3N-00871.miRNA-Seq.S37_L007_R1.T C3N-00871 HNSCC miRNA-Seq tumor CPT0094420007 180828_UNC32-K00270_0112_AHWTLNBBXX_CACGAT_S37_L007_R1_001.unaln.bam 199443131 BAM S37_L007_R1 unaligned CPTAC3 3ffd7835-31e2-4858-b845-1b0ee7602710 a304a69bbe4a9507db1de124243aeb9e {"aliquot_tag": "ALQ_8cf2e420", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00871.miRNA-Seq.T.hg38 C3N-00871 HNSCC miRNA-Seq tumor CPT0094420007 d41f2be7-f487-4026-ac54-b20e99d4d795_mirnaseq_gdc_realn.bam 219705116 BAM harmonized CPTAC3 ad0f53a9-caa0-430f-a577-91244afe7eab 9008670a492f725285885387a8ed35f8 {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.chimeric.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.chimeric.gdc_realn.bam 33264680 BAM chimeric harmonized CPTAC3 bf5ac8c2-fcff-4d55-9b08-b4b7a951af81 cadd0c0e2969dca6158679004df75f1e {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.chimeric.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.chimeric.gdc_realn.bam 268189092 BAM chimeric harmonized CPTAC3 e6f039a9-6da7-488b-8280-a02473dc2ec6 36d9397cc818fdb0844aa9f1b258a448 {"aliquot_tag": "ALQ_dc524f85", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.genomic.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.genomic.gdc_realn.bam 8764417737 BAM genomic harmonized CPTAC3 5c385d3b-df34-495c-87d3-2bdb083140d0 dbdac3f4997713a3ef7bc9aa09d2e232 {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.genomic.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.genomic.gdc_realn.bam 14158024006 BAM genomic harmonized CPTAC3 8eb97547-9bb6-40e4-97f5-288bc73a0e53 1a7176a2b27f5cb9dae610daa46a0eae {"aliquot_tag": "ALQ_dc524f85", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.S54_R1.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R1_001.fastq.gz 8918622985 FASTQ S54_R1 unaligned CPTAC3 bcb11898-0cfd-414a-b606-28e376bd2632 469c641be16ddad4724f63be92a87bb1 {"aliquot_tag": "ALQ_dc524f85", "sample": "S54", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.S54_R2.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R2_001.fastq.gz 9218630952 FASTQ S54_R2 unaligned CPTAC3 4576db9e-8de9-4f5c-b980-4a11287f6dfc 5c6cb107b7954a11051ff4d63631453a {"aliquot_tag": "ALQ_dc524f85", "sample": "S54", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.S9_L003_R1.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R1_001.fastq.gz 4135810698 FASTQ S9_L003_R1 unaligned CPTAC3 a73fcaff-9a1e-4c69-8cb5-e86675a2b9e5 4ef2eca695ab13b78f8bef010486cd7b {"aliquot_tag": "ALQ_8cf2e420", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.S9_L003_R2.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R2_001.fastq.gz 4525311768 FASTQ S9_L003_R2 unaligned CPTAC3 e1a47c74-afd0-4f7f-b392-54a4b6b2ea41 0f41aba291cd9a7d8216be19c0a35092 {"aliquot_tag": "ALQ_8cf2e420", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.transcriptome.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.transcriptome.gdc_realn.bam 11572685723 BAM transcriptome harmonized CPTAC3 d192c8e5-0638-41d8-8622-86d1208343d2 bfe50b4e1464901a56e57b275f313aa6 {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor"} -C3N-00871.RNA-Seq.transcriptome.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.transcriptome.gdc_realn.bam 10501590845 BAM transcriptome harmonized CPTAC3 d1d8ed81-667a-4229-9041-2000a65f93a9 f06c174536e513c8543e38133491f2d5 {"aliquot_tag": "ALQ_dc524f85", "gdc_sample_type": "Primary Tumor"} -C3N-00871.WGS.N C3N-00871 HNSCC WGS blood_normal CPT0094480008 CPT0094480008.WholeGenome.RP-1303.bam 72393575679 BAM aligned CPTAC3 5d65c146-0618-469e-9ce1-1be4bc2effe3 ba6c150f8f885013943acc629b337b8e {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal"} -C3N-00871.WGS.N.hg38 C3N-00871 HNSCC WGS blood_normal CPT0094480008 977a93e6-4351-45fa-96de-8cc607966272_wgs_gdc_realn.bam 107188077288 BAM harmonized CPTAC3 797ef08b-2a03-4445-8cf9-56d515b2d92a 95067fff09c612ebb4ab8fbed38930fd {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal"} -C3N-00871.WGS.T C3N-00871 HNSCC WGS tumor CPT0094420010 CPT0094420010.WholeGenome.RP-1303.bam 61468563846 BAM aligned CPTAC3 b3d6c036-cbcc-49e5-b02c-2a4ac5321d25 34f7665600b1af004ee078428bfbfac9 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor"} -C3N-00871.WGS.T.hg38 C3N-00871 HNSCC WGS tumor CPT0094420010 01090fc3-17f9-467a-bee3-662bb4e57820_wgs_gdc_realn.bam 91648338629 BAM harmonized CPTAC3 cf8d4394-5a7d-4ecf-90cc-dc622db5f4ed 09f07cce102322044fafbde098af6d23 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor"} -C3N-00871.WXS.N C3N-00871 HNSCC WXS blood_normal CPT0094480008 CPT0094480008.WholeExome.RP-1303.bam 31373370968 BAM aligned CPTAC3 b43376d7-5e80-4305-94e2-0e7cd5d6a6cf a6c176ae356fb2cea634b49fabfa1b43 {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal"} -C3N-00871.WXS.N.hg38 C3N-00871 HNSCC WXS blood_normal CPT0094480008 977a93e6-4351-45fa-96de-8cc607966272_wxs_gdc_realn.bam 43245945096 BAM harmonized CPTAC3 403783f2-6e97-43cc-b20c-e30d167fa7bd 2f90346dfb9b212ec588409c2f594b2d {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal"} -C3N-00871.WXS.T C3N-00871 HNSCC WXS tumor CPT0094420010 CPT0094420010.WholeExome.RP-1303.bam 27420854420 BAM aligned CPTAC3 6df13bac-b2ec-431e-a82f-43490ae586b3 5d68e1b65b51164ccbdd200fafc758cd {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor"} -C3N-00871.WXS.T.hg38 C3N-00871 HNSCC WXS tumor CPT0094420010 01090fc3-17f9-467a-bee3-662bb4e57820_wxs_gdc_realn.bam 38604538248 BAM harmonized CPTAC3 77b7d587-befe-4458-9e9c-7e329af1fbdb 6862d436795d821e2b93c475f24da2d9 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.MethArray.Green.T C3N-00872 UCEC Methylation_Array tumor CPT0116250007 203219650157_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8d783fe3-f5cd-4a2b-a253-bd0e87b6f2ad 6cfa3be2fa59d2b5e5ad6c0b589bbd4a {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.MethArray.Red.T C3N-00872 UCEC Methylation_Array tumor CPT0116250007 203219650157_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 a73a0461-425f-48b0-9bb0-a973ca89bfc7 170e9acc302190d4b22bee58d39404a2 {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.miRNA-Seq.A.hg38 C3N-00872 UCEC miRNA-Seq tissue_normal CPT0116280009 a4a08f34-5c15-42ea-ac72-7eec5fbc1fc3_mirnaseq_gdc_realn.bam 287787191 BAM harmonized CPTAC3 ed4ed58d-6da8-4bfe-9ea6-6c04669445e5 c40137aa9600cbe63d39b38f6af9869f {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.miRNA-Seq.S43_L003_R1.A C3N-00872 UCEC miRNA-Seq tissue_normal CPT0116280009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L003_R1_001.unaln.bam 250645735 BAM S43_L003_R1 unaligned CPTAC3 04cdca1f-c4b8-429b-a8a8-19c4843acfe5 1cf921650a6b67969796dfd0311f5031 {"aliquot_tag": "ALQ_a4a22c44", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.miRNA-Seq.S44_L003_R1.T C3N-00872 UCEC miRNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0176_AHYGLVBBXX_TATAAT_S44_L003_R1_001.unaln.bam 244173309 BAM S44_L003_R1 unaligned CPTAC3 253cbe12-4c14-41d3-b323-1219ec2748cd 184f42116516c75ab72ee7a08b229c1a {"aliquot_tag": "ALQ_3cf56110", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00872.miRNA-Seq.T.hg38 C3N-00872 UCEC miRNA-Seq tumor CPT0116250010 972e0acc-1bea-46d7-a506-87b186e36cdc_mirnaseq_gdc_realn.bam 265907333 BAM harmonized CPTAC3 c285e884-eba4-45c9-8bcb-66defd98bedf 008de24727adc0528423e6b8a02e1458 {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.chimeric.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.chimeric.gdc_realn.bam 48792243 BAM chimeric harmonized CPTAC3 72160f21-623f-4daa-95dd-86a2170fc451 d6e0ffd1cdce071dd6e56e512c87854d {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.RNA-Seq.chimeric.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.chimeric.gdc_realn.bam 29220840 BAM chimeric harmonized CPTAC3 d1786076-4514-451f-9670-e0d12a0a17a2 9be77e8fa01dbfe3bfa3a906e58e0485 {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.chimeric.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.chimeric.gdc_realn.bam 196913389 BAM chimeric harmonized CPTAC3 d1e7cefe-5dbd-41f9-ac03-18b576008ce7 22387d7d4ba83d7333469234413ab742 {"aliquot_tag": "ALQ_33d82683", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.genomic.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.genomic.gdc_realn.bam 10027076893 BAM genomic harmonized CPTAC3 d94b58e7-30c6-443b-9ac3-328192c06fa0 e8ca4753197954b9fe386f2173f0ec80 {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.RNA-Seq.genomic.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.genomic.gdc_realn.bam 7873876795 BAM genomic harmonized CPTAC3 10ca5a27-027b-438a-a5f6-60b4c059f6c7 ffe5764ef37f45060e517c38b6b79abc {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.genomic.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.genomic.gdc_realn.bam 11047598524 BAM genomic harmonized CPTAC3 e416f5a0-1ad6-434f-9322-b85badf05592 0a59ff72b47b500313ae9b09a0452596 {"aliquot_tag": "ALQ_33d82683", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.S24_L008_R1.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R1_001.fastq.gz 3696897511 FASTQ S24_L008_R1 unaligned CPTAC3 cabfd70f-26b9-44d8-ad68-1542477ab7c9 9d6ec0094f2edcdcdc457ae3d245af9b {"aliquot_tag": "ALQ_3cf56110", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.S24_L008_R2.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R2_001.fastq.gz 3873724480 FASTQ S24_L008_R2 unaligned CPTAC3 99b4e1f1-34d9-4b69-bb5e-5b3ffc0fcee0 e48e636651674f04f44b9bfda3fd03bf {"aliquot_tag": "ALQ_3cf56110", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.S33_R1.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R1_001.fastq.gz 6988351710 FASTQ S33_R1 unaligned CPTAC3 1629fad9-4878-4c77-8899-a2d7420986f3 75ab052e521d51a5072fb9ed9bcb9b34 {"aliquot_tag": "ALQ_33d82683", "sample": "S33", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.S33_R2.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R2_001.fastq.gz 7285825912 FASTQ S33_R2 unaligned CPTAC3 d3609305-26e7-42f5-b92a-43ccea1d7b12 b60ee59e0e3f38892438b87378ebf86b {"aliquot_tag": "ALQ_33d82683", "sample": "S33", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.S5_L002_R1.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R1_001.fastq.gz 4281378466 FASTQ S5_L002_R1 unaligned CPTAC3 bb274bbe-0077-4577-aa4b-89656d4a19de d263d59d51b0737146defb3c727689f5 {"aliquot_tag": "ALQ_a4a22c44", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.RNA-Seq.S5_L002_R2.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R2_001.fastq.gz 4719270240 FASTQ S5_L002_R2 unaligned CPTAC3 110a4c7e-71f1-4d8d-9092-e5424030f813 3268655cb200095538ca5916384fd198 {"aliquot_tag": "ALQ_a4a22c44", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.RNA-Seq.transcriptome.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.transcriptome.gdc_realn.bam 11336448211 BAM transcriptome harmonized CPTAC3 9faa9151-a6cf-423b-80e9-8f0fca7f9300 09fefcd89787ffeef8389ec4de467d58 {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.RNA-Seq.transcriptome.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.transcriptome.gdc_realn.bam 10180645064 BAM transcriptome harmonized CPTAC3 93f0c8b0-9d42-4ab9-8438-22561f299106 1c499663e382f1908c799ee052ce34d9 {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor"} -C3N-00872.RNA-Seq.transcriptome.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.transcriptome.gdc_realn.bam 5137278610 BAM transcriptome harmonized CPTAC3 b263b6f9-07da-4d13-bd80-335101059198 4978cb7d4b79622387deb1ef7bcdb3a8 {"aliquot_tag": "ALQ_33d82683", "gdc_sample_type": "Primary Tumor"} -C3N-00872.WGS.N C3N-00872 UCEC WGS blood_normal CPT0116330002 CPT0116330002.WholeGenome.RP-1303.bam 62384565348 BAM aligned CPTAC3 9db3be3b-8c75-466c-ab60-500840d012f6 54203145bb670d345c351add36400ab1 {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal"} -C3N-00872.WGS.N.hg38 C3N-00872 UCEC WGS blood_normal CPT0116330002 84ad92c7-50c4-478c-aee1-95dba53bbb7b_wgs_gdc_realn.bam 91136245838 BAM harmonized CPTAC3 1e62f45a-68a2-4194-b96f-9b5cd1851102 28d50179151da2108a80ac3b7d8d57b7 {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal"} -C3N-00872.WGS.T C3N-00872 UCEC WGS tumor CPT0116250007 CPT0116250007.WholeGenome.RP-1303.bam 56286050876 BAM aligned CPTAC3 7ed27d67-c059-4f23-9c98-c9a23e61303b b9f7e39e2c6b21e1812013db26a7c65a {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.WGS.T.hg38 C3N-00872 UCEC WGS tumor CPT0116250007 4cf0ae05-6027-4992-9751-92b2ea4c2198_wgs_gdc_realn.bam 82011672894 BAM harmonized CPTAC3 20c5f33e-4e87-4b3e-a8db-babc8895b7dd 672187f032fcba9e9aa49ce696071982 {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.WXS.A C3N-00872 UCEC WXS tissue_normal CPT0116280006 CPT0116280006.WholeExome.RP-1303.bam 19926454590 BAM aligned CPTAC3 7aade6fa-58ed-414b-89c6-bad9dbb9690d 47d258999317ed21e8117b6a0e70507d {"aliquot_tag": "ALQ_341d31d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.WXS.A.hg38 C3N-00872 UCEC WXS tissue_normal CPT0116280006 a08ea010-9f49-4280-98d1-c6bdfd39f559_wxs_gdc_realn.bam 27582182344 BAM harmonized CPTAC3 00eb5c33-98b2-4b40-9d9b-93172cff5246 f868f417eda3ad8045a302d0e91c02be {"aliquot_tag": "ALQ_341d31d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00872.WXS.N C3N-00872 UCEC WXS blood_normal CPT0116330002 CPT0116330002.WholeExome.RP-1303.bam 22984979212 BAM aligned CPTAC3 053b2240-f5d3-4bac-8ffc-329c4edebf26 6b569923a06dc5612dae67e4c8729c81 {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal"} -C3N-00872.WXS.N.hg38 C3N-00872 UCEC WXS blood_normal CPT0116330002 84ad92c7-50c4-478c-aee1-95dba53bbb7b_wxs_gdc_realn.bam 31310256445 BAM harmonized CPTAC3 97c312d8-e191-4abf-85f3-3515e2f3d949 b0d3808019cec471187ee34d3c70d0cd {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal"} -C3N-00872.WXS.T C3N-00872 UCEC WXS tumor CPT0116250007 CPT0116250007.WholeExome.RP-1303.bam 27689097271 BAM aligned CPTAC3 65b17f18-8bdc-4637-b17e-fc52583cd524 41e0c802066f5b856c31783af1480406 {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor"} -C3N-00872.WXS.T.hg38 C3N-00872 UCEC WXS tumor CPT0116250007 4cf0ae05-6027-4992-9751-92b2ea4c2198_wxs_gdc_realn.bam 37925158138 BAM harmonized CPTAC3 f43b8473-811f-4751-9802-aae7c76c4c5e 95d7b9d908c86e837d4db2b41bbd769d {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor"} -C3N-00880.MethArray.Green.T C3N-00880 UCEC Methylation_Array tumor CPT0078710010 202184990057_R03C01_Grn.idat 13676218 IDAT Green NA CPTAC3 8a3baf71-0dc0-4571-b1bf-4d59fd1b0bf0 496e49c4a6226dfc655a0f231a86f4a9 {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor"} -C3N-00880.MethArray.Red.T C3N-00880 UCEC Methylation_Array tumor CPT0078710010 202184990057_R03C01_Red.idat 13676218 IDAT Red NA CPTAC3 dc069b2e-28f5-49ed-8f4f-734eccd99557 48e188651d2d20fb76800d820489681b {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor"} -C3N-00880.miRNA-Seq.S19_L005_R1.T C3N-00880 UCEC miRNA-Seq tumor CPT0078710007 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L005_R1_001.unaln.bam 212662511 BAM S19_L005_R1 unaligned CPTAC3 61ae2220-a020-42b2-a8c0-570310627257 b5166ba2f5336590f3fcc45ab4fea10e {"aliquot_tag": "ALQ_9fec9418", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00880.miRNA-Seq.T.hg38 C3N-00880 UCEC miRNA-Seq tumor CPT0078710007 c6f87cd6-014d-4b5d-bd43-c6560a2000a3_mirnaseq_gdc_realn.bam 236219763 BAM harmonized CPTAC3 349237b9-0a64-491c-b1d1-731a4cd22303 b2d7a90c611e28638235253f06178d89 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor"} -C3N-00880.RNA-Seq.chimeric.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.chimeric.gdc_realn.bam 220296908 BAM chimeric harmonized CPTAC3 998f2450-f7f6-419c-ae89-b1174bb8c6cd d9ca66411b2a52b1cc22563f5d268021 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor"} -C3N-00880.RNA-Seq.genomic.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.genomic.gdc_realn.bam 8552625394 BAM genomic harmonized CPTAC3 2ea9c9e8-c345-44fe-be3f-7c32f36e4e7e cf6d2a7ac89eef79d0f584e07a567d99 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor"} -C3N-00880.RNA-Seq.S5_L002_R1.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R1_001.fastq.gz 4058753257 FASTQ S5_L002_R1 unaligned CPTAC3 f0952653-8c23-4781-a477-c2ce76f9d1b6 34570876e7d63e1d08b81e0e597a9245 {"aliquot_tag": "ALQ_9fec9418", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00880.RNA-Seq.S5_L002_R2.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R2_001.fastq.gz 4421738132 FASTQ S5_L002_R2 unaligned CPTAC3 6a2bd4f3-68fc-48f2-a604-db2c5a7b665b 9c1ccdbe48d30004544f40124a821569 {"aliquot_tag": "ALQ_9fec9418", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00880.RNA-Seq.transcriptome.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.transcriptome.gdc_realn.bam 11295373053 BAM transcriptome harmonized CPTAC3 9ba9d8b5-4cd9-461f-ba44-fece814b3f77 353bfafff85e9640d2b0c2484dc6c3a8 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor"} -C3N-00880.WGS.N C3N-00880 UCEC WGS blood_normal CPT0078790002 CPT0078790002.WholeGenome.RP-1303.bam 74618018102 BAM aligned CPTAC3 d54c5886-845a-4344-ad59-640aac4aa84d 4d2ffff54f31cde9466f842945e587d2 {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal"} -C3N-00880.WGS.N.hg38 C3N-00880 UCEC WGS blood_normal CPT0078790002 d564a1a0-e99a-4998-8fa1-df8128379f65_gdc_realn.bam 109558122973 BAM harmonized CPTAC3 a3cc4371-a3ba-4bf9-83a8-944c42d63a5d 39102ab7d438c8155a5f6ac196ef66bd {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal"} -C3N-00880.WGS.T C3N-00880 UCEC WGS tumor CPT0078710010 CPT0078710010.WholeGenome.RP-1303.bam 64996766133 BAM aligned CPTAC3 7629b872-4672-47db-876a-715b681f6b78 9655038b8121bddce75b1c44e1dad1bf {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor"} -C3N-00880.WGS.T.hg38 C3N-00880 UCEC WGS tumor CPT0078710010 90388559-98b6-4014-b201-f64e4965649b_gdc_realn.bam 95731746049 BAM harmonized CPTAC3 46d5c8ad-33ef-4601-afbd-9b24761939c4 6f695a21d10fdf65a167387a993f911e {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor"} -C3N-00880.WXS.N C3N-00880 UCEC WXS blood_normal CPT0078790002 CPT0078790002.WholeExome.RP-1303.bam 39329772036 BAM aligned CPTAC3 cd642219-843d-4989-94ed-ce830d8f76e7 5551857732a499a81d158df339ea1dd5 {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal"} -C3N-00880.WXS.N.hg38 C3N-00880 UCEC WXS blood_normal CPT0078790002 d564a1a0-e99a-4998-8fa1-df8128379f65_gdc_realn.bam 53095766760 BAM harmonized CPTAC3 1a8134da-8b3b-4ef2-bef6-a09a7bba5847 04883134f4389db1ea43d2f647dc3235 {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal"} -C3N-00880.WXS.T C3N-00880 UCEC WXS tumor CPT0078710010 CPT0078710010.WholeExome.RP-1303.bam 27578544024 BAM aligned CPTAC3 104a6440-a2e3-4e92-b0af-ca129f694835 ba748e4de18dce67cd1a8d4e6f90e60e {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor"} -C3N-00880.WXS.T.hg38 C3N-00880 UCEC WXS tumor CPT0078710010 90388559-98b6-4014-b201-f64e4965649b_gdc_realn.bam 38211643538 BAM harmonized CPTAC3 dbc9b510-b274-4590-b23a-606d5ae71d48 777d68208ed2809c6d419ddaec5b63b6 {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_52fb2eb3.miRNA-Seq.S10_L006_R1.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065220006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGGCG_S10_L006_R1_001.unaln.bam 244489118 BAM S10_L006_R1 unaligned CPTAC3 fba111ef-263b-47c5-8eea-c8226ea0b5fb 8a7dac69fa03243fc1731b89d7d6e944 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_52fb2eb3.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065220006 19ced899-9a31-465a-b7b9-41df57ad7762_mirnaseq_gdc_realn.bam 265894349 BAM harmonized CPTAC3 81f5b6e3-0ef4-4c56-8860-23f92f1d26c2 af4b517bddc58bd4ec5a3f6ead391650 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_52fb2eb3.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.chimeric.gdc_realn.bam 327915679 BAM chimeric harmonized CPTAC3 0ba24d45-9a91-443c-857c-3cf44b69ea84 dbd757ebf8151fba11b2f93bcbe278e8 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_52fb2eb3.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.genomic.gdc_realn.bam 8157076537 BAM genomic harmonized CPTAC3 2329d250-f867-4bbe-8f7f-e25c76483b8d 0163a775b832604befbab533f7ce7a76 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_52fb2eb3.RNA-Seq.S26_L006_R1.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R1_001.fastq.gz 3671257257 FASTQ S26_L006_R1 unaligned CPTAC3 532616de-67ac-459a-afeb-b3153dd4f685 f27ad4a237e8c1d44fc5974c458792d0 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_52fb2eb3.RNA-Seq.S26_L006_R2.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R2_001.fastq.gz 4359870205 FASTQ S26_L006_R2 unaligned CPTAC3 570b6c64-408f-4ced-9426-d558d138f9a2 c25d9b3c8cf64843e715c77770002215 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_52fb2eb3.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.transcriptome.gdc_realn.bam 9255053205 BAM transcriptome harmonized CPTAC3 a7ce1d90-cabc-4ac2-9712-234c2f3f587f e977cf29f9b639be64f61fcf9f4ae01c {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_9b5d259f.MethArray.Green.T C3N-00953 CCRCC Methylation_Array tumor CPT0065440009 204372030079_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dc95ffa1-a37d-4a0a-bcea-97117d80f7f1 92c6a16903d681396eb175cacb9f0d66 {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_9b5d259f.MethArray.Red.T C3N-00953 CCRCC Methylation_Array tumor CPT0065440009 204372030079_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 1014112e-9f81-4792-a507-89da52039f2c 79d7061616bf9ec7425a2fff4ef53cdd {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_9b5d259f.WGS.T C3N-00953 CCRCC WGS tumor CPT0065440009 CPT0065440009.WholeGenome.RP-2158.bam 22738300277 BAM aligned CPTAC3 661722f8-f4ee-4439-91de-0b86fba283cd 3d0dd6cf1bf6395a43fde67b7636fff0 {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_9b5d259f.WGS.T.hg38 C3N-00953 CCRCC WGS tumor CPT0065440009 baf79fe8-b7ef-4e69-98c2-81b4430452bd_wgs_gdc_realn.bam 66643031450 BAM harmonized CPTAC3 ebda4915-d39c-41d1-b761-508074371938 772dc61bcd48f1ece91df29e5088ae53 {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_9b5d259f.WXS.T C3N-00953 CCRCC WXS tumor CPT0065440009 CPT0065440009.WholeExome.RP-1303.bam 23354354468 BAM aligned CPTAC3 7b6c48a4-4bb3-4ec6-8548-c33158b4bfb2 7b4ce099ea6416d2f7b672a874684e8e {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_9b5d259f.WXS.T.hg38 C3N-00953 CCRCC WXS tumor CPT0065440009 baf79fe8-b7ef-4e69-98c2-81b4430452bd_wxs_gdc_realn.bam 31826473645 BAM harmonized CPTAC3 7221896a-5c33-4093-941b-94d2521363c2 d2ebc34ca09ab7ab5d69b275f8c2e6fb {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_be2380e.miRNA-Seq.S42_L005_R1.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065440006 200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L005_R1_001.unaln.bam 242922238 BAM S42_L005_R1 unaligned CPTAC3 cbd76193-7344-4a9e-aed4-4b72f0dd1092 248389b7e408cb7377e93a023373b6d1 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_be2380e.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065440006 d8700b66-5582-4fa4-9fe6-8d4ce0c5d1e2_mirnaseq_gdc_realn.bam 268478208 BAM harmonized CPTAC3 59b8e5b9-941a-4139-8131-a535795f9a00 dee7fe07c506be20107e4049a2244324 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_be2380e.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.chimeric.gdc_realn.bam 111658895 BAM chimeric harmonized CPTAC3 e33ceeed-7f49-4ead-93fd-9c7dd30cdd68 7842859339421c4199d446d20878141b {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_be2380e.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.genomic.gdc_realn.bam 7220140413 BAM genomic harmonized CPTAC3 aaf2369d-ce14-44a9-9ccf-43ad2c788354 7b0382995a1281db94753ad515ad8c20 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_be2380e.RNA-Seq.S34_L005_R1.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R1_001.fastq.gz 3361203837 FASTQ S34_L005_R1 unaligned CPTAC3 f024b599-90cb-4640-a907-324ea7ef0a95 244dcce86bdb30114d5f9c2c24ef488b {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_be2380e.RNA-Seq.S34_L005_R2.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R2_001.fastq.gz 3902270374 FASTQ S34_L005_R2 unaligned CPTAC3 0bd50e24-a6a0-4c2c-ab7b-8d212adbce91 af7b7958103319039b0e20038a2596c2 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_be2380e.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.transcriptome.gdc_realn.bam 9358608386 BAM transcriptome harmonized CPTAC3 d74ecc5c-fa7c-41a0-814f-0891c2341b9a 8143c4e1f8ba87059e8a9a791d6c75b0 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_c2443322.MethArray.Green.T C3N-00953 CCRCC Methylation_Array tumor CPT0065220009 204372030127_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4fbe467a-f9ce-440d-949f-4470601b6778 bec0881098a464248c92ea4fca3fee31 {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_c2443322.MethArray.Red.T C3N-00953 CCRCC Methylation_Array tumor CPT0065220009 204372030127_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 6014cf5a-7814-4eb5-b053-5c9b9dc4aa1f ba053948a18662f64c8194dd0e87909b {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_c2443322.WGS.T C3N-00953 CCRCC WGS tumor CPT0065220009 CPT0065220009.WholeGenome.RP-2158.bam 30629407503 BAM aligned CPTAC3 cfd48475-ba37-476e-8791-cd777d460882 09ba137d0087619a8538403fc42f484f {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_c2443322.WGS.T.hg38 C3N-00953 CCRCC WGS tumor CPT0065220009 89529584-f16b-447e-aad4-e01b365c8e52_wgs_gdc_realn.bam 92962091824 BAM harmonized CPTAC3 dcaf7454-8905-4b55-9b3b-c032168d8822 8f4b8ca79de491b2ea68b8054e3aabdb {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_c2443322.WXS.T C3N-00953 CCRCC WXS tumor CPT0065220009 CPT0065220009.WholeExome.RP-1303.bam 24402496408 BAM aligned CPTAC3 0c67bf6e-4689-405c-92dc-6392774e8b93 e6e1ba3d4fcf103927572105040b6c83 {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.DUP_c2443322.WXS.T.hg38 C3N-00953 CCRCC WXS tumor CPT0065220009 89529584-f16b-447e-aad4-e01b365c8e52_wxs_gdc_realn.bam 34519222652 BAM harmonized CPTAC3 8fc19554-9c84-4a85-8074-5078ba531805 7ebdb0a20cd9d1b83da1f04c86b97aa1 {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-00953.MethArray.Green.T C3N-00953 CCRCC Methylation_Array tumor CPT0065430009 202163530118_R05C01_Grn.idat 13676245 IDAT Green NA CPTAC3 01385fca-c18f-437d-847e-b4a168c46193 c8a6ad80a362d33e8c6f59acbaa709bb {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor"} -C3N-00953.MethArray.Red.T C3N-00953 CCRCC Methylation_Array tumor CPT0065430009 202163530118_R05C01_Red.idat 13676245 IDAT Red NA CPTAC3 b60b78f6-f562-41fc-9c3d-b7ce73b47b44 14b4c26b8ee57e6ef0ac9bb4d08f64b6 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor"} -C3N-00953.miRNA-Seq.S27_L005_R1.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065430006 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L005_R1_001.unaln.bam 274368446 BAM S27_L005_R1 unaligned CPTAC3 bc67f62c-cdac-4c8d-96a1-6bcc56556b59 802cb4dc4e0ee9c00a3e4692f5d20eee {"aliquot_tag": "ALQ_b9c2e41e", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00953.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065430006 9ec24e09-2d8f-44c4-85c5-b03d7641ebe9_mirnaseq_gdc_realn.bam 298301798 BAM harmonized CPTAC3 a8e6b3de-247e-4414-9bd0-307d47d08c42 8c49338dff346060a020f8bba4c6403b {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor"} -C3N-00953.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.chimeric.gdc_realn.bam 138344359 BAM chimeric harmonized CPTAC3 f59b0dfc-d32d-49ed-93ec-4180eef59d10 dd5096025d817dacbb69d4260af1eca9 {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor"} -C3N-00953.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.genomic.gdc_realn.bam 9040447265 BAM genomic harmonized CPTAC3 8f6e2370-0450-4e70-bd7d-e8c432090d17 b527b8a9df46d84cffae36f986517fba {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor"} -C3N-00953.RNA-Seq.S9_L007_R1.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R1_001.fastq.gz 4660604210 FASTQ S9_L007_R1 unaligned CPTAC3 fddb0068-8209-43fb-b1bb-45f70688ba24 0a914855f1a996078b6de3d7a194d339 {"aliquot_tag": "ALQ_b9c2e41e", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00953.RNA-Seq.S9_L007_R2.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R2_001.fastq.gz 5067259916 FASTQ S9_L007_R2 unaligned CPTAC3 9cec05f2-4b61-4862-bff8-4d0b9e01a47f c137ad77f4e4d7ee97a64716a5abc0b7 {"aliquot_tag": "ALQ_b9c2e41e", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00953.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.transcriptome.gdc_realn.bam 11558312163 BAM transcriptome harmonized CPTAC3 fc444489-061c-453d-87e4-6d858b41b377 0d4ff309bcdd6000001f4343157fa881 {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor"} -C3N-00953.WGS.N C3N-00953 CCRCC WGS blood_normal CPT0070680002 CPT0070680002.WholeGenome.RP-1303.bam 66782233531 BAM aligned CPTAC3 c1fc0f6e-0230-4af6-b344-1679d6405ae1 c481d3af84f3a29c8eb655bf6746647b {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal"} -C3N-00953.WGS.N.hg38 C3N-00953 CCRCC WGS blood_normal CPT0070680002 c1eb9e6d-669b-4d1c-83c6-9710f4c80717_gdc_realn.bam 103070094683 BAM harmonized CPTAC3 6dc712f1-4606-47d3-8671-a62035b73e82 c0a9a28de767435c2ea2861ef5ca47b3 {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal"} -C3N-00953.WGS.T C3N-00953 CCRCC WGS tumor CPT0065430009 CPT0065430009.WholeGenome.RP-1303.bam 68586796640 BAM aligned CPTAC3 e0206fd8-977b-403f-8136-3acb47add764 2b0be826513fa0c5eef2eaadef97ff70 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor"} -C3N-00953.WGS.T.hg38 C3N-00953 CCRCC WGS tumor CPT0065430009 91cf314a-8f4d-4f05-bd33-1b7eef5974af_gdc_realn.bam 103045029409 BAM harmonized CPTAC3 2b435898-48e1-4a4c-983e-5b250ce6e3e4 4ed9222444a1e78ec2f0f334ea2b2d16 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor"} -C3N-00953.WXS.N C3N-00953 CCRCC WXS blood_normal CPT0070680002 CPT0070680002.WholeExome.RP-1303.bam 37309118486 BAM aligned CPTAC3 eb1bbff3-def7-4677-963b-64483ff6694d f26c9ec4369e5bd81f8824c13b1a7943 {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal"} -C3N-00953.WXS.N.hg38 C3N-00953 CCRCC WXS blood_normal CPT0070680002 c1eb9e6d-669b-4d1c-83c6-9710f4c80717_gdc_realn.bam 52512534170 BAM harmonized CPTAC3 dceac80d-e43b-4f91-a3da-34fa539976f3 a18b700045f0d130fb868ff8528b6553 {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal"} -C3N-00953.WXS.T C3N-00953 CCRCC WXS tumor CPT0065430009 CPT0065430009.WholeExome.RP-1303.bam 26165634565 BAM aligned CPTAC3 34af8b1f-d82e-4681-8cad-76b86b1ee0bb c86c690bd6a7d5e924797139ba54b6c5 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor"} -C3N-00953.WXS.T.hg38 C3N-00953 CCRCC WXS tumor CPT0065430009 91cf314a-8f4d-4f05-bd33-1b7eef5974af_gdc_realn.bam 35792432243 BAM harmonized CPTAC3 23178ce9-1b2c-4276-a96d-1bf7e6c5e740 8910a20c507fbad498044a73f652af00 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor"} -C3N-00954.MethArray.Green.A C3N-00954 PDA Methylation_Array tissue_normal CPT0065100006 203561620052_R08C01_Grn.idat 13676212 IDAT Green NA CPTAC3 e5326f61-c16e-4782-b000-6f054996c5e8 86187d3285503ee747b6acad7c5d5409 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.MethArray.Green.T C3N-00954 PDA Methylation_Array tumor CPT0065080013 202176290105_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d0bd7369-3496-4abe-b2e6-07a84473890d 6174daf0699b084d315e49c40743301e {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor"} -C3N-00954.MethArray.Red.A C3N-00954 PDA Methylation_Array tissue_normal CPT0065100006 203561620052_R08C01_Red.idat 13676212 IDAT Red NA CPTAC3 be0d3e09-8aba-4686-a4c8-4ce66a3afa04 a3982dbe4e68781c02e29992eca7d6a7 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.MethArray.Red.T C3N-00954 PDA Methylation_Array tumor CPT0065080013 202176290105_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 7b53d4f7-c6c3-4412-9b05-7c90bd921881 5edd2e482b9b73a6ae7efd40557e6158 {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor"} -C3N-00954.miRNA-Seq.A.hg38 C3N-00954 PDA miRNA-Seq tissue_normal CPT0065100009 1f14966f-789b-4626-892d-0e322b528aba_mirnaseq_gdc_realn.bam 251184535 BAM harmonized CPTAC3 d30019a6-032b-4c60-bf16-c701505b424f c13060e6109e97cf8b589628838f71d1 {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.miRNA-Seq.S23_L001_R1.A C3N-00954 PDA miRNA-Seq tissue_normal CPT0065100009 181108_UNC31-K00269_0162_AH255GBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 232412201 BAM S23_L001_R1 unaligned CPTAC3 4640af1b-5537-42ea-843d-64be1133cb21 cb89478f005966c8a314ec4ad6265173 {"aliquot_tag": "ALQ_3e1012ec", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.miRNA-Seq.S2_L001_R1.T C3N-00954 PDA miRNA-Seq tumor CPT0065080006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L001_R1_001.unaln.bam 251482663 BAM S2_L001_R1 unaligned CPTAC3 2ae8c6c2-a871-4ad3-b04a-e30e8a3ceb17 d54577db885cc26c82d51859601c6d19 {"aliquot_tag": "ALQ_55839719", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00954.miRNA-Seq.T.hg38 C3N-00954 PDA miRNA-Seq tumor CPT0065080006 dfe002b1-bc33-480a-944f-f93a1be777ee_mirnaseq_gdc_realn.bam 278405547 BAM harmonized CPTAC3 8c9a4a5a-5fbc-4d3c-bd4b-60e5bf7e58ea 3305018d4b2d1d793acaaa60f41a633e {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor"} -C3N-00954.RNA-Seq.chimeric.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.chimeric.gdc_realn.bam 160906254 BAM chimeric harmonized CPTAC3 a24aab78-8d04-41c3-8db8-bc535d5aed86 1e41fc9839c6c996106e53c04e304a04 {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.RNA-Seq.chimeric.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.chimeric.gdc_realn.bam 55655598 BAM chimeric harmonized CPTAC3 baa66fd2-f07e-4c4b-9431-e5066e5e5d68 b0f9ec7a39348a646d28cd53cd5fca1c {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor"} -C3N-00954.RNA-Seq.genomic.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.genomic.gdc_realn.bam 12069965447 BAM genomic harmonized CPTAC3 44448d98-76db-41a2-8bd7-a080eef9ff9d d4ce827db4547ca92aaff7c2c62e4d05 {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.RNA-Seq.genomic.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.genomic.gdc_realn.bam 7537681616 BAM genomic harmonized CPTAC3 ae8d9b19-27a0-40cc-a39f-d311e0985599 6ad8ad3a8c6ff0633a15d477f8fc9fab {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor"} -C3N-00954.RNA-Seq.S2_L008_R1.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R1_001.fastq.gz 5887497961 FASTQ S2_L008_R1 unaligned CPTAC3 367a3e0d-14bc-4611-a9ef-7e0ad04447da 3d6a2766136e5a9ba7baf1b4a519414b {"aliquot_tag": "ALQ_3e1012ec", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.RNA-Seq.S2_L008_R2.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R2_001.fastq.gz 6311998386 FASTQ S2_L008_R2 unaligned CPTAC3 00fdc20d-e0f0-42f5-b1b7-bd214d8eaff8 90ab71dc5be38bca7bd30cc130ae7d63 {"aliquot_tag": "ALQ_3e1012ec", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.RNA-Seq.S7_L002_R1.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3472421229 FASTQ S7_L002_R1 unaligned CPTAC3 e6323501-1e7d-4e7d-9b40-f61d8dff75c8 c0b8fdc740ed6520d3fbb8c5ec107796 {"aliquot_tag": "ALQ_55839719", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00954.RNA-Seq.S7_L002_R2.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3784810336 FASTQ S7_L002_R2 unaligned CPTAC3 a7e74dfb-0fd4-48b1-b5ef-9019201b7a2a f7efd634d728fbba1517eeba2335f87f {"aliquot_tag": "ALQ_55839719", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00954.RNA-Seq.transcriptome.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.transcriptome.gdc_realn.bam 13714869475 BAM transcriptome harmonized CPTAC3 6f0669d4-1b02-4e8b-8229-d97d27cf6ab6 4b62528f51bc74663a5fc2df968dbdee {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.RNA-Seq.transcriptome.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.transcriptome.gdc_realn.bam 9401403320 BAM transcriptome harmonized CPTAC3 c1c6f4a0-34e1-403a-b879-ef76af493057 a4185d6faca912ff0613b4214c524845 {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WGS.A C3N-00954 PDA WGS tissue_normal CPT0065100006 CPT0065100006.WholeGenome.RP-1303.bam 54697256827 BAM aligned CPTAC3 157047e3-ed9c-4920-8aac-d5e97fe669d0 5ce70c29f8e8ec61cbd878ed76896276 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.WGS.A.hg38 C3N-00954 PDA WGS tissue_normal CPT0065100006 de354132-ab9c-4621-b541-f7984ebb156e_wgs_gdc_realn.bam 79909132589 BAM harmonized CPTAC3 de47c75b-7cf9-4e0e-b30e-818dd7351e87 1bd3c3b2cfbf78f976d9ac76db23973e {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.WGS.N C3N-00954 PDA WGS blood_normal CPT0070660002 CPT0070660002.WholeGenome.RP-1303.bam 76867918749 BAM aligned CPTAC3 ff2840a5-0755-447d-a56e-ea73da42499a fbd7bb0d303e11d3645ab8e9fe39ab56 {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal"} -C3N-00954.WGS.N.hg38 C3N-00954 PDA WGS blood_normal CPT0070660002 b007b2b2-9c17-4025-a1fb-4eb517ff6157_gdc_realn.bam 117637601954 BAM harmonized CPTAC3 6ceacd16-83bf-4d23-98a5-981312b97561 043adddb8aef262189649097c68a888f {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal"} -C3N-00954.WGS.T C3N-00954 PDA WGS tumor CPT0065080013_1 CPT0065080013_1.WholeGenome.RP-1303.bam 132365859924 BAM aligned CPTAC3 2e12c833-ec17-4a0a-b12b-a01d6603dd3f e317a353b0548b3ae3482fb0de6cba16 {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WGS.T C3N-00954 PDA WGS tumor CPT0065080013 CPT0065080013.WholeGenome.RP-1303.bam 79319864131 BAM aligned CPTAC3 2a4fbedb-0519-4a22-8855-837c42f2b09c 2bd95e90698979e1de58550168bbf33a {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WGS.T.hg38 C3N-00954 PDA WGS tumor CPT0065080013_1 eb3df28f-f452-47fa-8b1a-290e0fdd24b4_wgs_gdc_realn.bam 198987595167 BAM harmonized CPTAC3 4f3f19c0-b3b1-4151-b60c-55e663cf3498 b1e968b82d004fe12fb494d0c140255a {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WGS.T.hg38 C3N-00954 PDA WGS tumor CPT0065080013 624dfe3b-aeb9-4927-8970-215b28ee94f1_gdc_realn.bam 121817075664 BAM harmonized CPTAC3 96d6103d-2709-43b0-808a-0f61e0fb7417 60198b3e2f1ef461c6485ddf4672dc54 {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WXS.A C3N-00954 PDA WXS tissue_normal CPT0065100006 CPT0065100006.WholeExome.RP-1303.bam 43512444381 BAM aligned CPTAC3 b558d1cb-7366-407a-8c7f-2c746607997c b301fc9e113d3913b9ab01ef4182eb22 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.WXS.A.hg38 C3N-00954 PDA WXS tissue_normal CPT0065100006 de354132-ab9c-4621-b541-f7984ebb156e_wxs_gdc_realn.bam 59603851716 BAM harmonized CPTAC3 1d00f4d3-8a04-42d1-858a-59c89e39d056 9e26941d4470685e12540081baf34658 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00954.WXS.N C3N-00954 PDA WXS blood_normal CPT0070660002 CPT0070660002.WholeExome.RP-1303.bam 41129968108 BAM aligned CPTAC3 14984c7c-87c8-4ab1-8e09-b143ea4c6652 f40165b7899ecc6cd602a0d7ec289ac9 {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal"} -C3N-00954.WXS.N.hg38 C3N-00954 PDA WXS blood_normal CPT0070660002 b007b2b2-9c17-4025-a1fb-4eb517ff6157_gdc_realn.bam 56681893693 BAM harmonized CPTAC3 d5eeb605-1ce5-464b-898e-ad22e5ea45af 38b45c0bce2e045a34140303dbbbc994 {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal"} -C3N-00954.WXS.T C3N-00954 PDA WXS tumor CPT0065080013_1 CPT0065080013_1.WholeExome.RP-1303.bam 54955919027 BAM aligned CPTAC3 8cbc1a02-ab24-4933-9873-f24956cff99c c92450cc944d814c337013b226d8ee92 {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WXS.T C3N-00954 PDA WXS tumor CPT0065080013 CPT0065080013.WholeExome.RP-1303.bam 25320800889 BAM aligned CPTAC3 d48c2290-6dc9-48d8-8b2e-89a8df59026c 2a8f0a47a5775cdfaf3e02fec185a56a {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WXS.T.hg38 C3N-00954 PDA WXS tumor CPT0065080013_1 eb3df28f-f452-47fa-8b1a-290e0fdd24b4_wxs_gdc_realn.bam 75506601837 BAM harmonized CPTAC3 47b92164-64e3-479d-83f5-4678d6bdd3fb 33e9dbceb9ea8f4f52fed839bf0e2c6d {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor"} -C3N-00954.WXS.T.hg38 C3N-00954 PDA WXS tumor CPT0065080013 624dfe3b-aeb9-4927-8970-215b28ee94f1_gdc_realn.bam 34845914451 BAM harmonized CPTAC3 36ed1056-9186-4dba-b8ff-ea9d345cd182 a5840618c509637ec2cfd2590b69470d {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor"} -C3N-00957.ADD_40a3dad7.MethArray.Green.T C3N-00957 PDA Methylation_Array tumor CPT0089720009 202234360029_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 84bcdede-25a8-450e-9067-29f65d95c4ee bf7773074dfad9eeb5484fb1f673f4d0 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00957.ADD_40a3dad7.MethArray.Red.T C3N-00957 PDA Methylation_Array tumor CPT0089720009 202234360029_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 e5a6177f-5cfc-43e5-8f97-31d95493bba0 dcdff9cca8cbce7e224ae1be720ad02a {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00957.ADD_40a3dad7.WGS.T C3N-00957 PDA WGS tumor CPT0089720009 CPT0089720009.WholeGenome.RP-1303.bam 58231483153 BAM aligned CPTAC3 c52ca1e6-4a57-4225-8803-3c6bb70fd9c9 4f20b8da86dbf95f8a8730671203c6de {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00957.ADD_40a3dad7.WGS.T.hg38 C3N-00957 PDA WGS tumor CPT0089720009 09adfee1-caef-414c-b95a-68ed0ce391a8_wgs_gdc_realn.bam 85329545588 BAM harmonized CPTAC3 9c4d41ba-8a18-4928-b100-893b1858dbd9 1f908d02518f681349b2251c32d93400 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00957.ADD_40a3dad7.WXS.T C3N-00957 PDA WXS tumor CPT0089720009 CPT0089720009.WholeExome.RP-1303.bam 33457437771 BAM aligned CPTAC3 2a773ca9-0cf1-48ab-833c-22779f2a26b9 c2591fedaead142f31b34447539e2cb1 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00957.ADD_40a3dad7.WXS.T.hg38 C3N-00957 PDA WXS tumor CPT0089720009 09adfee1-caef-414c-b95a-68ed0ce391a8_wxs_gdc_realn.bam 45791099037 BAM harmonized CPTAC3 693cdc51-ab9c-4b7e-988b-39c94028c251 ac7ff412bcda32731827496dedac0720 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-00957.MethArray.Green.A C3N-00957 PDA Methylation_Array tissue_normal CPT0089750007 203561620053_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a77e3b38-37bd-4c62-8ea1-ceb5923dd152 472e876682681f358fdd383e0080c994 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00957.MethArray.Red.A C3N-00957 PDA Methylation_Array tissue_normal CPT0089750007 203561620053_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 5546d99a-5c9e-48c9-abc7-e94e2ce42e59 10608d4cb7290c3ce20549d16cadd650 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00957.miRNA-Seq.S5_L007_R1.T C3N-00957 PDA miRNA-Seq tumor CPT0089720006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAACTA_S5_L007_R1_001.unaln.bam 264781864 BAM S5_L007_R1 unaligned CPTAC3 998c8a92-92c9-4656-9368-30f7752bdc7c 97573249e020dec33843dbdfbe57a161 {"aliquot_tag": "ALQ_d01cc746", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00957.miRNA-Seq.T.hg38 C3N-00957 PDA miRNA-Seq tumor CPT0089720006 94568398-b852-4380-b8d2-5be89c73b351_mirnaseq_gdc_realn.bam 285819047 BAM harmonized CPTAC3 d83bf88a-b4f3-4e27-987c-ad38affb09ad 1dbe84040a571e631690fcba12001553 {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor"} -C3N-00957.RNA-Seq.chimeric.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.chimeric.gdc_realn.bam 38434638 BAM chimeric harmonized CPTAC3 3064efaf-0547-4d92-9f68-76d5c0876d61 03e3cfb4d280763baa3db038b173d20a {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor"} -C3N-00957.RNA-Seq.genomic.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.genomic.gdc_realn.bam 9407212831 BAM genomic harmonized CPTAC3 32b9eb2a-7525-404d-bf08-987eeb117242 ab8eec257c3a1a0446450ac58b1866ec {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor"} -C3N-00957.RNA-Seq.S3_L006_R1.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R1_001.fastq.gz 3911560268 FASTQ S3_L006_R1 unaligned CPTAC3 e9fa0d97-bade-42eb-b268-673f13619093 32fa47e32cf767c4c49e7346f3df4dd1 {"aliquot_tag": "ALQ_d01cc746", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00957.RNA-Seq.S3_L006_R2.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R2_001.fastq.gz 4361482381 FASTQ S3_L006_R2 unaligned CPTAC3 3320297a-0634-4b50-921b-d2619774fab7 0f70fece8ff5a8e3460b5af19b7ebaa2 {"aliquot_tag": "ALQ_d01cc746", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00957.RNA-Seq.transcriptome.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.transcriptome.gdc_realn.bam 10235594000 BAM transcriptome harmonized CPTAC3 27520bb6-62f1-4abb-894f-49688c6ceab2 22db5a93f2765ddd0c6da9c47d1c8dae {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor"} -C3N-00957.WGS.A C3N-00957 PDA WGS tissue_normal CPT0089750007 CPT0089750007.WholeGenome.RP-1303.bam 56148012836 BAM aligned CPTAC3 23f21231-9f0c-412f-b03f-987d7d583aba 2a7b76fd359d08996a11fcb4efa7894b {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00957.WGS.A.hg38 C3N-00957 PDA WGS tissue_normal CPT0089750007 64db149d-cd1f-43a2-bcdc-1765ac672776_wgs_gdc_realn.bam 82332167189 BAM harmonized CPTAC3 dc59cd3e-6b2f-4427-a800-bb0ce2129f01 de098e7769517c67457149b1afc4374d {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00957.WGS.N C3N-00957 PDA WGS blood_normal CPT0091380002 CPT0091380002.WholeGenome.RP-1303.bam 59032000458 BAM aligned CPTAC3 0b1769a1-e60a-4d07-ab34-e5490f59e65f db2c8e7704c53f8b456fdd73595a7e18 {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal"} -C3N-00957.WGS.N.hg38 C3N-00957 PDA WGS blood_normal CPT0091380002 e57bbda9-d5ab-49b3-a731-7b3050424f62_wgs_gdc_realn.bam 87688384544 BAM harmonized CPTAC3 77936b8e-3991-4d6c-b393-266344ba2fc9 4b015a0a1f4d910b06ae88b5f1b5b2dc {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal"} -C3N-00957.WXS.A C3N-00957 PDA WXS tissue_normal CPT0089750007 CPT0089750007.WholeExome.RP-1303.bam 26521160811 BAM aligned CPTAC3 d98c509c-a180-460f-9975-2d329ab05d09 47ec4972f7dd41dc5057f85826cb74a6 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00957.WXS.A.hg38 C3N-00957 PDA WXS tissue_normal CPT0089750007 64db149d-cd1f-43a2-bcdc-1765ac672776_wxs_gdc_realn.bam 35960050006 BAM harmonized CPTAC3 c12e493e-52c3-4ea4-931f-cd736bbef506 c27d63409f00faf35616f8efb46b8e01 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00957.WXS.N C3N-00957 PDA WXS blood_normal CPT0091380002 CPT0091380002.WholeExome.RP-1303.bam 39068976605 BAM aligned CPTAC3 75fd5e68-0512-4ed4-b7c4-01511f755f35 a677f5dcbbf5281b87639044bfd3da7c {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal"} -C3N-00957.WXS.N.hg38 C3N-00957 PDA WXS blood_normal CPT0091380002 e57bbda9-d5ab-49b3-a731-7b3050424f62_wxs_gdc_realn.bam 53899006822 BAM harmonized CPTAC3 aa13a00e-9297-410e-af11-4695f7753c31 9ee4a6f793dad3e0686fca77a8f18abe {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal"} -C3N-00957.WXS.T C3N-00957 PDA WXS tumor CPT0089720009_1 CPT0089720009_1.WholeExome.RP-1303.bam 57261185706 BAM aligned CPTAC3 22b06158-8c7d-461a-ac42-4b22e48b4f09 97e4466170795b16c2da2de5243146f0 {"aliquot_tag": "ALQ_855b7bef", "gdc_sample_type": "Primary Tumor"} -C3N-00957.WXS.T.hg38 C3N-00957 PDA WXS tumor CPT0089720009_1 35d8f6b0-b20d-4676-bb76-9416d7a5bd11_wxs_gdc_realn.bam 78682798708 BAM harmonized CPTAC3 4d3af9f7-b24b-40fd-8471-5d5e4270d98b 67e32bcbdda3e4cb66aa1602c4185f61 {"aliquot_tag": "ALQ_855b7bef", "gdc_sample_type": "Primary Tumor"} -C3N-00958.MethArray.Green.A C3N-00958 CCRCC Methylation_Array tissue_normal CPT0384760006 205549610123_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 39a373e4-9a76-40f2-a151-b8b89784bf59 ca944151feb502699ed5fb897e980f8c {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.MethArray.Green.T C3N-00958 CCRCC Methylation_Array tumor CPT0384730009 205549600088_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9e8f841c-3f4a-4c6c-84b5-f93f54a4dc2f 2c4207fd5ed9dbb6096e270366dc5ae0 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor"} -C3N-00958.MethArray.Red.A C3N-00958 CCRCC Methylation_Array tissue_normal CPT0384760006 205549610123_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 765f9529-2b71-4e14-94b2-1e6912ef2128 31701a91e4c6dd8b69a99f1aa06f6302 {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.MethArray.Red.T C3N-00958 CCRCC Methylation_Array tumor CPT0384730009 205549600088_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 67e66ff1-e803-4a66-83df-33fc88e08576 066419f6a7d69c7fe93f53c26a059f37 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor"} -C3N-00958.miRNA-Seq.A.hg38 C3N-00958 CCRCC miRNA-Seq tissue_normal CPT0384760009 fd0b5920-c0fe-409c-9514-fad860d2c5d4_mirnaseq_gdc_realn.bam 326468136 BAM harmonized CPTAC3 e93777c0-2db0-43a9-88d5-817278309c48 d7f5998749d52b37b0eefb3ac9c971f4 {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.miRNA-Seq.S18_L001_R1.T C3N-00958 CCRCC miRNA-Seq tumor CPT0384730006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTGGCC_S18_L001_R1_001.unaln.bam 231829224 BAM S18_L001_R1 unaligned CPTAC3 ee5b5b30-92f6-412b-a45a-c85cc1e28ba1 f1a8cf57f7da74b39c2b38999ad71957 {"aliquot_tag": "ALQ_b526b3f3", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00958.miRNA-Seq.S33_L003_R1.A C3N-00958 CCRCC miRNA-Seq tissue_normal CPT0384760009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TACAGC_S33_L003_R1_001.unaln.bam 303984173 BAM S33_L003_R1 unaligned CPTAC3 db0d8071-e40c-4050-8e58-544521afa64f 48a321800b222fcecaa51ad19a5bf2b4 {"aliquot_tag": "ALQ_ed792112", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.miRNA-Seq.T.hg38 C3N-00958 CCRCC miRNA-Seq tumor CPT0384730006 701e7361-8bfa-44c3-84bc-cefd09a71037_mirnaseq_gdc_realn.bam 249318853 BAM harmonized CPTAC3 1f1a8a0f-f23a-47ad-883f-700b50eb0129 4e4f4bfec53bb9da8bdced13f5378968 {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor"} -C3N-00958.RNA-Seq.chimeric.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.chimeric.gdc_realn.bam 406414048 BAM chimeric harmonized CPTAC3 01579f9d-8d6d-47b5-95b2-b96aa7ffa09a 018dfac89f0888941e61e23a503293cf {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.RNA-Seq.chimeric.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.chimeric.gdc_realn.bam 354554705 BAM chimeric harmonized CPTAC3 eb4fee32-453f-4095-b2bd-39978030a442 6dea2039df2ce934a7a2f3a9d0788601 {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor"} -C3N-00958.RNA-Seq.genomic.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.genomic.gdc_realn.bam 9712596117 BAM genomic harmonized CPTAC3 9f05bc72-82af-406a-9971-513ac864b894 7fd1754cd6c4ea63560ae52aae40f423 {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.RNA-Seq.genomic.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.genomic.gdc_realn.bam 7092949844 BAM genomic harmonized CPTAC3 42070ca2-797b-4f58-95db-a4dc2a85df63 76983ac0523dc6cd98fcd6ca60dd4094 {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor"} -C3N-00958.RNA-Seq.S14_L005_R1.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R1_001.fastq.gz 4609680825 FASTQ S14_L005_R1 unaligned CPTAC3 e5b55cfb-c53e-4b95-bbf1-b60345ff71cf 69f4a3c8aadc666396aeae993b5227ad {"aliquot_tag": "ALQ_ed792112", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.RNA-Seq.S14_L005_R2.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R2_001.fastq.gz 5038662955 FASTQ S14_L005_R2 unaligned CPTAC3 a2f5c1ad-253b-4182-a13e-5f5b196a9c78 abf3c483e912fde9010f02de5684c896 {"aliquot_tag": "ALQ_ed792112", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.RNA-Seq.S19_L005_R1.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R1_001.fastq.gz 3338074856 FASTQ S19_L005_R1 unaligned CPTAC3 248ac505-2412-46ed-ac68-0f3cc4e95a28 3ff6251b9bff97a0bca885025ed5240e {"aliquot_tag": "ALQ_b526b3f3", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00958.RNA-Seq.S19_L005_R2.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R2_001.fastq.gz 3802566466 FASTQ S19_L005_R2 unaligned CPTAC3 d4aa189b-410b-4f58-834e-1f3cd6e62ed6 cdf7798da50f8d249905edbfba5f0063 {"aliquot_tag": "ALQ_b526b3f3", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00958.RNA-Seq.transcriptome.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.transcriptome.gdc_realn.bam 11068117281 BAM transcriptome harmonized CPTAC3 017eee61-551e-4912-9a2a-2bbf7288a37a 4cf456afada9bb9fb9d1ee81fd5f4b2f {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.RNA-Seq.transcriptome.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.transcriptome.gdc_realn.bam 8684772264 BAM transcriptome harmonized CPTAC3 d0f6c388-b7d7-44cf-8032-9c60cfb3534f 0e572387907525824d2416c773e3de6d {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor"} -C3N-00958.WGS.N C3N-00958 CCRCC WGS blood_normal CPT0385460002 CPT0385460002.WholeGenome.RP-2158.bam 28482936401 BAM aligned CPTAC3 bd01bdf4-aa5e-4692-84d8-805c1c150ea6 d9c073f52058eb2c0524680b745d21fe {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal"} -C3N-00958.WGS.N.hg38 C3N-00958 CCRCC WGS blood_normal CPT0385460002 e2813bc9-1b08-47b5-9cd0-62ee378b28e5_wgs_gdc_realn.bam 86213244684 BAM harmonized CPTAC3 125f9e07-0b01-46f0-8c7b-190eee3598bc f16ef3cdbe51585ded77b20c486f7c25 {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal"} -C3N-00958.WGS.T C3N-00958 CCRCC WGS tumor CPT0384730009 CPT0384730009.WholeGenome.RP-2158.bam 19627147137 BAM aligned CPTAC3 3b0c06cf-9208-412c-9e9a-61c73f3d1556 59f53f023e6b995d90806796a41861cf {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor"} -C3N-00958.WGS.T.hg38 C3N-00958 CCRCC WGS tumor CPT0384730009 24b3e2a9-789b-4201-89bd-e75c7b215c3a_wgs_gdc_realn.bam 57653000237 BAM harmonized CPTAC3 6bf0484c-cff7-439a-85bc-20cd3079e212 eeb4be310c9991e777dc81aa97e0e9e3 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor"} -C3N-00958.WXS.A C3N-00958 CCRCC WXS tissue_normal CPT0384760006 CPT0384760006.WholeExome.RP-1303.bam 22793942592 BAM aligned CPTAC3 769cabc0-02ef-40a6-a2eb-227db8aaf719 c286c69cec7d3f603159e6ce4f2e6155 {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.WXS.A.hg38 C3N-00958 CCRCC WXS tissue_normal CPT0384760006 1480ef47-1bae-453a-a84b-6a4eb16664a0_wxs_gdc_realn.bam 31100931334 BAM harmonized CPTAC3 9e6c01a7-d4d3-4642-99d5-7af30e991b26 36f96566ce20ba52ac1a42d176a39d21 {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00958.WXS.N C3N-00958 CCRCC WXS blood_normal CPT0385460002 CPT0385460002.WholeExome.RP-1303.bam 23084575445 BAM aligned CPTAC3 09469947-9cda-4f67-9e36-a702b99b911f 8eff8531de9258e3065f7ddbcedb0239 {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal"} -C3N-00958.WXS.N.hg38 C3N-00958 CCRCC WXS blood_normal CPT0385460002 e2813bc9-1b08-47b5-9cd0-62ee378b28e5_wxs_gdc_realn.bam 31465550771 BAM harmonized CPTAC3 505b1007-5857-4954-85e9-a1c6fe1c0679 d626e26d609d82964f6094f3318ca1a2 {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal"} -C3N-00958.WXS.T C3N-00958 CCRCC WXS tumor CPT0384730009 CPT0384730009.WholeExome.RP-1303.bam 26167824755 BAM aligned CPTAC3 38972608-4f70-41bb-9250-c7a47a7e693f 8d9f42daff85aabde6cb48a378bd7cc5 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor"} -C3N-00958.WXS.T.hg38 C3N-00958 CCRCC WXS tumor CPT0384730009 24b3e2a9-789b-4201-89bd-e75c7b215c3a_wxs_gdc_realn.bam 37269806487 BAM harmonized CPTAC3 5d5a3f62-fef8-4a16-a210-35edeef1ac97 fcc2d122e798bd21e9dc97b94aaeac84 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor"} -C3N-00959.MethArray.Green.A C3N-00959 LUAD Methylation_Array tissue_normal CPT0079850008 203028200048_R06C01_Grn.idat 13676232 IDAT Green NA CPTAC3 c0d59ff5-47b7-4a29-bad9-0210a099ddb5 d67473439d5cc3221bfaa38462300a4e {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.MethArray.Green.T C3N-00959 LUAD Methylation_Array tumor CPT0079830009 202176290046_R05C01_Grn.idat 13676215 IDAT Green NA CPTAC3 5830bb6c-782a-4d02-9d2e-3b730426dc69 18b36176273117864d5688f5bd84d46e {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor"} -C3N-00959.MethArray.Red.A C3N-00959 LUAD Methylation_Array tissue_normal CPT0079850008 203028200048_R06C01_Red.idat 13676232 IDAT Red NA CPTAC3 79abf28b-da59-4634-902c-66bc9a280fb8 82790d3b170ed1c9c241786d7e083246 {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.MethArray.Red.T C3N-00959 LUAD Methylation_Array tumor CPT0079830009 202176290046_R05C01_Red.idat 13676215 IDAT Red NA CPTAC3 ca1d14a3-b3e7-41f2-8014-27be07a30449 aa93ca5a74ad462b70f5b7de1d8f9d83 {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor"} -C3N-00959.miRNA-Seq.A.hg38 C3N-00959 LUAD miRNA-Seq tissue_normal CPT0079850005 e85a667a-b5a6-41b6-9064-33b4b253e2b2_mirnaseq_gdc_realn.bam 284573652 BAM harmonized CPTAC3 8f3bad73-cebc-44e2-b7e3-b5ce4a282c49 4ca994e6be4eaaa1fd25cfe9af640af1 {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.miRNA-Seq.S14_L001_R1.T C3N-00959 LUAD miRNA-Seq tumor CPT0079830006 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L001_R1_001.unaln.bam 216850708 BAM S14_L001_R1 unaligned CPTAC3 c4dea5a3-9024-4a6d-833d-2f7e316cb5c1 fd2e11cf1e34901975bc7ddbec34ae3f {"aliquot_tag": "ALQ_c50a4e8f", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00959.miRNA-Seq.S36_L008_R1.A C3N-00959 LUAD miRNA-Seq tissue_normal CPT0079850005 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L008_R1_001.unaln.bam 259614711 BAM S36_L008_R1 unaligned CPTAC3 2775e94f-f4d4-4b80-b245-feea6308e58a 034a2afa70a1c551ff484c49f8865101 {"aliquot_tag": "ALQ_d343ea95", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.miRNA-Seq.T.hg38 C3N-00959 LUAD miRNA-Seq tumor CPT0079830006 6a83ae63-0905-4f0a-93bf-7c621fbe54cf_mirnaseq_gdc_realn.bam 244399662 BAM harmonized CPTAC3 ab5c3d99-4b61-45bb-a81f-100b3dc53522 798fc9a7880b54005d9c219ca7ea53fb {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor"} -C3N-00959.RNA-Seq.chimeric.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.chimeric.gdc_realn.bam 76478717 BAM chimeric harmonized CPTAC3 d5f722d6-ec77-430f-a091-5d578b7c1ff3 14edf0e16671ce81c109321cf324336c {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.RNA-Seq.chimeric.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.chimeric.gdc_realn.bam 46175931 BAM chimeric harmonized CPTAC3 8b4d0c1a-2549-4e39-9777-1a6052927c46 c0b118040adc7e3a48ab98c675cc9f4a {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor"} -C3N-00959.RNA-Seq.genomic.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.genomic.gdc_realn.bam 8129045978 BAM genomic harmonized CPTAC3 745652ec-8a6f-4860-893b-3423e7a9b9d3 da96f1d7e2345ad407e2adcc0205e223 {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.RNA-Seq.genomic.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.genomic.gdc_realn.bam 8431579276 BAM genomic harmonized CPTAC3 2f6d6bf2-26ac-487e-b59b-6e7c55345d1b 9698c7444e58658c217ee816517b6f5b {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor"} -C3N-00959.RNA-Seq.S13_L004_R1.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3935302587 FASTQ S13_L004_R1 unaligned CPTAC3 9b39328d-4e48-4d68-94c6-5c3e83d92a65 736b36f83926751cbbf9db168502370c {"aliquot_tag": "ALQ_c50a4e8f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-00959.RNA-Seq.S13_L004_R2.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4269685926 FASTQ S13_L004_R2 unaligned CPTAC3 a68b8948-3bf6-4130-a106-6c766696f6c3 712fa2d1a36fe83056f6779a247d0cc3 {"aliquot_tag": "ALQ_c50a4e8f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-00959.RNA-Seq.S78_L008_R1.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R1_001.fastq.gz 4020554061 FASTQ S78_L008_R1 unaligned CPTAC3 778ac7ff-a6e3-4083-9c0f-8d8b497c56aa eb20668f3adb0af0ce3977b019bda7a7 {"aliquot_tag": "ALQ_d343ea95", "sample": "S78", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.RNA-Seq.S78_L008_R2.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R2_001.fastq.gz 4342676725 FASTQ S78_L008_R2 unaligned CPTAC3 60953128-c2f1-471f-8b70-216b9446b839 717886200e2bd4719b63238583a4f05c {"aliquot_tag": "ALQ_d343ea95", "sample": "S78", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.RNA-Seq.transcriptome.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.transcriptome.gdc_realn.bam 10335177707 BAM transcriptome harmonized CPTAC3 90b6e280-c8ee-4a9c-932f-35241b1c8713 6c25b5828493ea18e4a3cd6918728258 {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.RNA-Seq.transcriptome.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.transcriptome.gdc_realn.bam 10459278833 BAM transcriptome harmonized CPTAC3 479062e4-85bf-438e-a0bc-0f3601137c93 db56e9882e554c7ab3eec55ddcc42a06 {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor"} -C3N-00959.WGS.A C3N-00959 LUAD WGS tissue_normal CPT0079850008 CPT0079850008.WholeGenome.RP-1303.bam 58614808767 BAM aligned CPTAC3 f73ba9f6-4df2-4e25-aa04-54a036ac167d 0129f25238c17b193f126465c05090cc {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.WGS.A.hg38 C3N-00959 LUAD WGS tissue_normal CPT0079850008 e57ae3c6-fdc3-428f-a274-35a0ae813f7b_wgs_gdc_realn.bam 85457569017 BAM harmonized CPTAC3 670ca876-71b8-42c6-91a6-84bcfd4c86cd b715f2c07a39c52c0f1cb69f2bc61dce {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.WGS.N C3N-00959 LUAD WGS blood_normal CPT0080770002 CPT0080770002.WholeGenome.RP-1303.bam 71773430569 BAM aligned CPTAC3 74a447ad-cdae-46fe-a68b-4030c6287a91 8f0c8428b8f99499e1b5204e7161f928 {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00959.WGS.N.hg38 C3N-00959 LUAD WGS blood_normal CPT0080770002 8e83ef46-d267-45b7-917e-b9e9e4bdb363_gdc_realn.bam 112542448845 BAM harmonized CPTAC3 86018d06-3354-4a51-8200-591a3071350a f889d8e27639c939663a1734f3d95fcf {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00959.WGS.T C3N-00959 LUAD WGS tumor CPT0079830009 CPT0079830009.WholeGenome.RP-1303.bam 66385803474 BAM aligned CPTAC3 8f669357-eabc-4116-9448-238400202eef f28fe35020f06a7dc785021e0633a92a {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor"} -C3N-00959.WGS.T.hg38 C3N-00959 LUAD WGS tumor CPT0079830009 ab74ba2c-c2fc-4dc1-9d4b-943680f7b486_gdc_realn.bam 100578487992 BAM harmonized CPTAC3 fe620bed-1b17-40d7-87cb-1012d86518b2 0fdd9d5adf1e243fc0b760bbf2cd6e2c {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor"} -C3N-00959.WXS.A C3N-00959 LUAD WXS tissue_normal CPT0079850008 CPT0079850008.WholeExome.RP-1303.bam 26490556056 BAM aligned CPTAC3 8943917d-9d91-419d-8304-1dfb1d51397a 3ea46a3ed99cc83b9d8f13ad0340f4bb {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.WXS.A.hg38 C3N-00959 LUAD WXS tissue_normal CPT0079850008 e57ae3c6-fdc3-428f-a274-35a0ae813f7b_wxs_gdc_realn.bam 36310452650 BAM harmonized CPTAC3 947a7bdb-5a00-47e8-a1f0-79e7d8932a26 2bb0b1b9be5e58bad5befa0983f8047b {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal"} -C3N-00959.WXS.N C3N-00959 LUAD WXS blood_normal CPT0080770002 CPT0080770002.WholeExome.RP-1303.bam 30892121541 BAM aligned CPTAC3 dbb316c1-8114-4ca1-8e21-dce82b82effe 7850885a6430ea246e1452f604e9c988 {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00959.WXS.N.hg38 C3N-00959 LUAD WXS blood_normal CPT0080770002 8e83ef46-d267-45b7-917e-b9e9e4bdb363_gdc_realn.bam 42133332087 BAM harmonized CPTAC3 bb389d60-4210-4de4-bfb0-50e66395d661 fc090febec5d56d5519ed8733caceaeb {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-00959.WXS.T C3N-00959 LUAD WXS tumor CPT0079830009 CPT0079830009.WholeExome.RP-1303.bam 22912595307 BAM aligned CPTAC3 ec261977-471a-4f31-ad62-bad86602e1ff 7d3f9eaea87e7e2d4ffa434a25b67524 {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor"} -C3N-00959.WXS.T.hg38 C3N-00959 LUAD WXS tumor CPT0079830009 ab74ba2c-c2fc-4dc1-9d4b-943680f7b486_gdc_realn.bam 31562863338 BAM harmonized CPTAC3 a7f53506-333d-46c9-bc5f-9a5d66d1233b 69a66262c9d4f63ca57ed44df2f4f3d9 {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor"} -C3N-01003.MethArray.Green.T C3N-01003 UCEC Methylation_Array tumor CPT0078610009 202176290046_R06C01_Grn.idat 13676215 IDAT Green NA CPTAC3 fd6b15e7-ba66-45e8-b6e2-7fda69b69531 f11b46ea0fa463bd67268a5d06b3bbf5 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor"} -C3N-01003.MethArray.Red.T C3N-01003 UCEC Methylation_Array tumor CPT0078610009 202176290046_R06C01_Red.idat 13676215 IDAT Red NA CPTAC3 26617b88-8f34-4ee8-bdaa-049e67e9f09e db668818a1f9c5e58ceabf2a99d834a0 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor"} -C3N-01003.miRNA-Seq.A.hg38 C3N-01003 UCEC miRNA-Seq tissue_normal CPT0078620004 ee6a2ad1-f9c7-416d-880f-35a429392984_mirnaseq_gdc_realn.bam 283844427 BAM harmonized CPTAC3 18bea84e-c27b-4b64-9fd1-2bc4dd7db636 c9b53f5052a9240f3209de091962b85a {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01003.miRNA-Seq.S14_L008_R1.T C3N-01003 UCEC miRNA-Seq tumor CPT0078610006 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L008_R1_001.unaln.bam 251967311 BAM S14_L008_R1 unaligned CPTAC3 cc065977-6a98-443c-b43c-5f1779a892a0 40570b7d3cc3e9f570f8d9f56c698d08 {"aliquot_tag": "ALQ_23b7772b", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01003.miRNA-Seq.S8_L005_R1.A C3N-01003 UCEC miRNA-Seq tissue_normal CPT0078620004 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L005_R1_001.unaln.bam 241823904 BAM S8_L005_R1 unaligned CPTAC3 c01a88a0-381b-459c-993f-cf5085b0124d 6220ce6b33a3c12726a3be9ca0bdea2f {"aliquot_tag": "ALQ_8a196cd7", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01003.miRNA-Seq.T.hg38 C3N-01003 UCEC miRNA-Seq tumor CPT0078610006 1003e681-643b-42c5-85e3-c152b7b4115a_mirnaseq_gdc_realn.bam 282386712 BAM harmonized CPTAC3 3f93a39a-ee7b-4195-9a23-d4550627dab7 78c829f4136cdb0327999756b64d7589 {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.chimeric.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.chimeric.gdc_realn.bam 96849608 BAM chimeric harmonized CPTAC3 5e9c9a05-ae1b-4cf4-ad55-ce2daf99bb3c 9094e9516c459b9d21aea901da545484 {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01003.RNA-Seq.chimeric.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.chimeric.gdc_realn.bam 121238198 BAM chimeric harmonized CPTAC3 c656d5e5-9276-4933-b4b0-22776d88652f b62160873c6c1cf3ce83771074e6c98e {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.chimeric.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.chimeric.gdc_realn.bam 57491008 BAM chimeric harmonized CPTAC3 54c45ff5-387d-446e-8596-92741cd90f85 57217ce373ab7f10b394529f70e36c1d {"aliquot_tag": "ALQ_40de0387", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.genomic.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.genomic.gdc_realn.bam 7381551183 BAM genomic harmonized CPTAC3 63a75053-034c-4a79-9865-648f89a7ee6a 361103a3d28d2e7e671f324b6ad6250f {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01003.RNA-Seq.genomic.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.genomic.gdc_realn.bam 6915711491 BAM genomic harmonized CPTAC3 cd781f89-87e4-4c00-9138-137423e2730e acd9f746ff467196f70b6759d725f677 {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.genomic.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.genomic.gdc_realn.bam 12251629381 BAM genomic harmonized CPTAC3 a387b6a1-c4f3-4587-b786-31c738c1af6f c164e11b30dde31223d6ff880d743c9c {"aliquot_tag": "ALQ_40de0387", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.S13_L004_R1.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R1_001.fastq.gz 3602842705 FASTQ S13_L004_R1 unaligned CPTAC3 ca8d953d-a91b-4337-a7d3-29a4413e9e52 1416d451b065c70d112ace29633aebc9 {"aliquot_tag": "ALQ_8a196cd7", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01003.RNA-Seq.S13_L004_R2.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R2_001.fastq.gz 3840913134 FASTQ S13_L004_R2 unaligned CPTAC3 ceb30669-cc87-4cb6-a827-f6416abbe816 33b2779abab41ccd821a91ff89f8dedb {"aliquot_tag": "ALQ_8a196cd7", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01003.RNA-Seq.S14_L006_R1.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R1_001.fastq.gz 3467987800 FASTQ S14_L006_R1 unaligned CPTAC3 4313d974-189f-4e5e-93c5-87adb840c560 6202996fb10ffcdea41b7e4bb33e36d1 {"aliquot_tag": "ALQ_23b7772b", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.S14_L006_R2.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R2_001.fastq.gz 3743365626 FASTQ S14_L006_R2 unaligned CPTAC3 a613938d-aa43-4c67-ba0c-78c1c6c69a7b 4eba383edf03b5d51c053b01d48f4e4a {"aliquot_tag": "ALQ_23b7772b", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.S30_R1.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R1_001.fastq.gz 4418984733 FASTQ S30_R1 unaligned CPTAC3 27741501-da36-4b81-b561-7fc5b1bbf24e 5023c4e92ed6746f055e6b145710f736 {"aliquot_tag": "ALQ_40de0387", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.S30_R2.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R2_001.fastq.gz 4265163977 FASTQ S30_R2 unaligned CPTAC3 471c0b24-4e9b-4182-9231-364f3b6b7735 3615416939874ae9ac0f979a5df3774b {"aliquot_tag": "ALQ_40de0387", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.transcriptome.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.transcriptome.gdc_realn.bam 9527237551 BAM transcriptome harmonized CPTAC3 85c4a0cd-fef5-4584-8324-f2df90652812 43870b5b5953f9e9da934a1b757f7c2a {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01003.RNA-Seq.transcriptome.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.transcriptome.gdc_realn.bam 8998170252 BAM transcriptome harmonized CPTAC3 0129a82b-c1d7-4a97-a03a-044f4a8ddf29 c25d16539ef96991927431794dccb7ab {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor"} -C3N-01003.RNA-Seq.transcriptome.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.transcriptome.gdc_realn.bam 3798284631 BAM transcriptome harmonized CPTAC3 3e70b210-a731-4ade-8e35-e3cb4e20d3fc d9fb1725faefa0abf04367aef20182e4 {"aliquot_tag": "ALQ_40de0387", "gdc_sample_type": "Primary Tumor"} -C3N-01003.WGS.N C3N-01003 UCEC WGS blood_normal CPT0078650002 CPT0078650002.WholeGenome.RP-1303.bam 68636357638 BAM aligned CPTAC3 4444ea52-1e5e-4025-a723-85140f57ef6b 9d680ef777c9133cc77650c01cb1820d {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01003.WGS.N.hg38 C3N-01003 UCEC WGS blood_normal CPT0078650002 51eb5a05-ad42-43dc-90a4-3ff7bb659a08_gdc_realn.bam 99991837066 BAM harmonized CPTAC3 f7ee25ab-e8b9-411d-8a85-30a3e162ce4b 9011627c85cb35dce9c861f5c944f40c {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01003.WGS.T C3N-01003 UCEC WGS tumor CPT0078610009 CPT0078610009.WholeGenome.RP-1303.bam 73701235841 BAM aligned CPTAC3 b8d5e911-7a70-4e50-8511-70fbcafddcca 23d4a494d5c69be327b80bd46d79e3c3 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor"} -C3N-01003.WGS.T.hg38 C3N-01003 UCEC WGS tumor CPT0078610009 b3f94939-b025-462f-8fff-ecbcd2a7d970_gdc_realn.bam 110019715494 BAM harmonized CPTAC3 c3c5f8e3-f323-4657-baab-5a0af7cbc471 459d488f7362b100eed7b419554d17e1 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor"} -C3N-01003.WXS.N C3N-01003 UCEC WXS blood_normal CPT0078650002 CPT0078650002.WholeExome.RP-1303.bam 28330800009 BAM aligned CPTAC3 a78df87f-09cf-4552-b3a9-f9509699548e bc9eda7dc2aa88373892008d6467dded {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01003.WXS.N.hg38 C3N-01003 UCEC WXS blood_normal CPT0078650002 51eb5a05-ad42-43dc-90a4-3ff7bb659a08_gdc_realn.bam 38444058873 BAM harmonized CPTAC3 a434ccce-59e9-494a-9621-9cc732068f76 7b2c56a725887a493ac7ba15a945c1e2 {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01003.WXS.T C3N-01003 UCEC WXS tumor CPT0078610009 CPT0078610009.WholeExome.RP-1303.bam 31880449889 BAM aligned CPTAC3 a2ec9e6c-7905-4651-8f2f-dba4b20e994c 2aa68b2979fb38f7ba86ea38f2c8baf5 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor"} -C3N-01003.WXS.T.hg38 C3N-01003 UCEC WXS tumor CPT0078610009 b3f94939-b025-462f-8fff-ecbcd2a7d970_gdc_realn.bam 43266049368 BAM harmonized CPTAC3 6e7973fa-f4a2-4c62-993e-444a64f54479 40b1107146eb85079f271c1302901787 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor"} -C3N-01007.MethArray.Green.T C3N-01007 UCEC Methylation_Array tumor CPT0095100009 202234370120_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8b42c6c3-47da-43f9-b487-73e4f7c7a659 b64f4dd55f6f77a8659c780895878e50 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor"} -C3N-01007.MethArray.Red.T C3N-01007 UCEC Methylation_Array tumor CPT0095100009 202234370120_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 af7edba4-a313-451e-be26-932fb3d4831b d8b8a04dd14bd33bb944bbdff23a08b4 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor"} -C3N-01007.miRNA-Seq.S38_L007_R1.T C3N-01007 UCEC miRNA-Seq tumor CPT0095100006 180828_UNC32-K00270_0112_AHWTLNBBXX_CACTCA_S38_L007_R1_001.unaln.bam 179324984 BAM S38_L007_R1 unaligned CPTAC3 f53acacb-2056-4c2a-af6f-3675a2206dea c8644e8e18e3f6ce481aa6771d111263 {"aliquot_tag": "ALQ_778f1dd1", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01007.miRNA-Seq.T.hg38 C3N-01007 UCEC miRNA-Seq tumor CPT0095100006 9619725d-e2d8-45cf-80e7-53d5424c74d6_mirnaseq_gdc_realn.bam 204587615 BAM harmonized CPTAC3 86ff480e-16a1-4759-acd0-48a630dce3ab ad526d82129451faadc6ca01dd208080 {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor"} -C3N-01007.RNA-Seq.chimeric.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.chimeric.gdc_realn.bam 50499893 BAM chimeric harmonized CPTAC3 3b0c63b1-eb2b-4e46-9524-97b104c0c99f 6264d64c91abc0399c1a7c4e3d841ed2 {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor"} -C3N-01007.RNA-Seq.genomic.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.genomic.gdc_realn.bam 8427897247 BAM genomic harmonized CPTAC3 217625ec-949a-43ba-911d-fecd7277bbd3 3de59a37de83abfc2b21aa72f5f232ae {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor"} -C3N-01007.RNA-Seq.S11_L003_R1.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R1_001.fastq.gz 3999784745 FASTQ S11_L003_R1 unaligned CPTAC3 e055453b-7826-4eae-a073-08d8e49220a7 e04a8106a0f914ec9bf4a8ebd7c1cc20 {"aliquot_tag": "ALQ_778f1dd1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01007.RNA-Seq.S11_L003_R2.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R2_001.fastq.gz 4334268791 FASTQ S11_L003_R2 unaligned CPTAC3 98aa1cc5-591d-43c4-9b91-0d395c802611 cecaf8b722e92d241ab567557244f634 {"aliquot_tag": "ALQ_778f1dd1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01007.RNA-Seq.transcriptome.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.transcriptome.gdc_realn.bam 9686210202 BAM transcriptome harmonized CPTAC3 b69c8da5-e3e6-4973-a62b-37067501d72d 55c4a33caaeaa73e2740c27b1d40bd51 {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor"} -C3N-01007.WGS.N C3N-01007 UCEC WGS blood_normal CPT0095120002 CPT0095120002.WholeGenome.RP-1303.bam 58360735935 BAM aligned CPTAC3 a8964b27-a4cf-455a-b287-4e96863cd247 e24827d9319dffd5da7567646fdc1ff9 {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01007.WGS.N.hg38 C3N-01007 UCEC WGS blood_normal CPT0095120002 5a790ee0-6b08-46bf-9caa-8e1fffea7565_wgs_gdc_realn.bam 86050153894 BAM harmonized CPTAC3 ec2f5ff4-8c4b-4612-8f8e-6e021b101ac0 7d888490d0863681e9c6e18dadfd9b67 {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01007.WGS.T C3N-01007 UCEC WGS tumor CPT0095100009 CPT0095100009.WholeGenome.RP-1303.bam 70186602687 BAM aligned CPTAC3 02f55ad4-1d37-4631-97f8-7d96d6d5c53a 6087311ef488a098840a119375c791b2 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor"} -C3N-01007.WGS.T.hg38 C3N-01007 UCEC WGS tumor CPT0095100009 5fb662f0-ae29-4bc2-b7db-0f272bf9b009_wgs_gdc_realn.bam 104176978478 BAM harmonized CPTAC3 76932fec-1429-4deb-bf5b-06c7ee943526 6de39a8f469714f019fbff1c646d20e3 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor"} -C3N-01007.WXS.N C3N-01007 UCEC WXS blood_normal CPT0095120002 CPT0095120002.WholeExome.RP-1303.bam 31644039447 BAM aligned CPTAC3 ad085034-4aa6-466b-8486-aea052e36684 322930a91fdfea04884ff29bce7da518 {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01007.WXS.N.hg38 C3N-01007 UCEC WXS blood_normal CPT0095120002 5a790ee0-6b08-46bf-9caa-8e1fffea7565_wxs_gdc_realn.bam 42054718510 BAM harmonized CPTAC3 cc642a8b-b3dc-43f6-827a-b2bd741be052 8fac648bb3d89155440aa74d76c7a29e {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01007.WXS.T C3N-01007 UCEC WXS tumor CPT0095100009 CPT0095100009.WholeExome.RP-1303.bam 42039831016 BAM aligned CPTAC3 c7bbcc2a-4f2b-4832-bd8d-127426c52fc0 00e7ee8124771f839e05409ae89fed52 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor"} -C3N-01007.WXS.T.hg38 C3N-01007 UCEC WXS tumor CPT0095100009 5fb662f0-ae29-4bc2-b7db-0f272bf9b009_wxs_gdc_realn.bam 58394631653 BAM harmonized CPTAC3 e0ccd503-b6cc-4aa3-b255-77afdd6ec42f f086abf2fb2fc8761ace0a5d0dd98ca4 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor"} -C3N-01008.MethArray.Green.T C3N-01008 UCEC Methylation_Array tumor CPT0095130010 202234380062_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 106f3b4a-7391-45c5-aed9-7b072854afa3 46d1620c104f8d8c926b6e2135e8d087 {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor"} -C3N-01008.MethArray.Red.T C3N-01008 UCEC Methylation_Array tumor CPT0095130010 202234380062_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 272c31ec-1696-4f97-8528-f2c17abe9454 72f94d91f355a05038849404064ed08f {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor"} -C3N-01008.miRNA-Seq.S39_L007_R1.T C3N-01008 UCEC miRNA-Seq tumor CPT0095130007 180828_UNC32-K00270_0112_AHWTLNBBXX_CAGGCG_S39_L007_R1_001.unaln.bam 220680255 BAM S39_L007_R1 unaligned CPTAC3 aabdf7fe-efa6-4bac-9594-8205797869a6 e0cb76c3b205a89179169c7261052adc {"aliquot_tag": "ALQ_47285797", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01008.miRNA-Seq.T.hg38 C3N-01008 UCEC miRNA-Seq tumor CPT0095130007 cde24901-60f6-4e4b-a836-a118c656926d_mirnaseq_gdc_realn.bam 243500831 BAM harmonized CPTAC3 0a0f5af0-a3d7-4331-b276-c8a58fcd0098 b5ed5a993995dd22bae91d0763ac75eb {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor"} -C3N-01008.RNA-Seq.chimeric.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.chimeric.gdc_realn.bam 35989663 BAM chimeric harmonized CPTAC3 7ad3a2bc-d81a-4cec-a3b2-e1fa04437773 8c4582b1807e95aa188e1695d09f32f1 {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor"} -C3N-01008.RNA-Seq.genomic.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.genomic.gdc_realn.bam 8117689364 BAM genomic harmonized CPTAC3 e1c4c621-897e-4038-b667-3b2779e722db 180e776702389f37f4c33cdf828eaaa3 {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor"} -C3N-01008.RNA-Seq.S5_L002_R1.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3884231388 FASTQ S5_L002_R1 unaligned CPTAC3 746a2984-4434-48b2-bdcb-302434f58f19 9142b1b9073a76e4709ae13ced14adad {"aliquot_tag": "ALQ_47285797", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01008.RNA-Seq.S5_L002_R2.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4179043586 FASTQ S5_L002_R2 unaligned CPTAC3 bd9117e2-c12d-47ac-a9de-642d5a4a3cee 33166e1db3b09ef1e6b693f5f2b312ca {"aliquot_tag": "ALQ_47285797", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01008.RNA-Seq.transcriptome.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.transcriptome.gdc_realn.bam 9772276931 BAM transcriptome harmonized CPTAC3 4397e6e2-a8b5-43b2-87bf-7ac00a29ba60 416d6575d02fa71815bad5a09d726574 {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor"} -C3N-01008.WGS.N C3N-01008 UCEC WGS blood_normal CPT0095170002 CPT0095170002.WholeGenome.RP-1303.bam 61040399034 BAM aligned CPTAC3 40efee03-fadb-4297-8252-822cc28097f1 46b88c645176dc5763837eb458235ae3 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01008.WGS.N.hg38 C3N-01008 UCEC WGS blood_normal CPT0095170002 1d7d2cc5-25d7-46c6-b6e4-ca8ed3295ff7_wgs_gdc_realn.bam 89163757990 BAM harmonized CPTAC3 3ca33205-c8b6-4ca4-9b6c-a98e1457d478 8326e41164b81bb51a9c9bac03078af9 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01008.WGS.T C3N-01008 UCEC WGS tumor CPT0095130010 CPT0095130010.WholeGenome.RP-1303.bam 70514562709 BAM aligned CPTAC3 a847efed-3716-45af-b52e-262fd4287b34 ee35982a69d18ae61d3e03242e0f429e {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor"} -C3N-01008.WGS.T.hg38 C3N-01008 UCEC WGS tumor CPT0095130010 1aaaa528-ab8c-4086-ab81-eca0ffd953ff_wgs_gdc_realn.bam 101958458872 BAM harmonized CPTAC3 6d177b27-0539-455c-b9fd-9a766d33f817 75b2fe80687df1202c9dab88da7d6d59 {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor"} -C3N-01008.WXS.N C3N-01008 UCEC WXS blood_normal CPT0095170002 CPT0095170002.WholeExome.RP-1303.bam 26101524705 BAM aligned CPTAC3 c2c78ee5-55f4-4b0d-b79d-bd177f8d4c18 e5f24e6548d4541670f9a83555833853 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01008.WXS.N.hg38 C3N-01008 UCEC WXS blood_normal CPT0095170002 1d7d2cc5-25d7-46c6-b6e4-ca8ed3295ff7_wxs_gdc_realn.bam 35329610710 BAM harmonized CPTAC3 310b5afd-b1f7-4cb4-aaa2-5e2575356a6a 9aea2d51ea259e1d5a6ccc3fd206b1f6 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01008.WXS.T C3N-01008 UCEC WXS tumor CPT0095130010 CPT0095130010.WholeExome.RP-1303.bam 35618083962 BAM aligned CPTAC3 60e65a63-6785-430c-b045-6be004b01291 f1d741f35391f21ae0de79fd587cd904 {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor"} -C3N-01008.WXS.T.hg38 C3N-01008 UCEC WXS tumor CPT0095130010 1aaaa528-ab8c-4086-ab81-eca0ffd953ff_wxs_gdc_realn.bam 48358497488 BAM harmonized CPTAC3 4cda9956-53f0-40ac-b3eb-93a1f16484dc 5874e29cb5bf0f907669264c6e7b907a {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor"} -C3N-01011.MethArray.Green.A C3N-01011 PDA Methylation_Array tissue_normal CPT0066020006 203561620080_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 93fbbe29-3062-49fc-8b97-7edb85c4f0a7 31dd84eb1b8ec0f40190b06a720321d1 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.MethArray.Green.T C3N-01011 PDA Methylation_Array tumor CPT0065640009 202184990052_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 17e304a5-9efe-41e2-9fd6-2eed68a67b69 95a0490003d3a1b4fadc0e1da6995585 {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor"} -C3N-01011.MethArray.Red.A C3N-01011 PDA Methylation_Array tissue_normal CPT0066020006 203561620080_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 1ee1a9d2-538e-4422-a293-5bde60315309 06392f4a248a8818bf7957b0ff3bd43f {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.MethArray.Red.T C3N-01011 PDA Methylation_Array tumor CPT0065640009 202184990052_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 8f942763-8d7d-4268-8620-b0bc19f4a8ce d78fda697cda7510ff4de81307d5125e {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor"} -C3N-01011.miRNA-Seq.A.hg38 C3N-01011 PDA miRNA-Seq tissue_normal CPT0066020009 36e2381a-dba9-4b24-bb5d-ddbec6e2ec74_mirnaseq_gdc_realn.bam 227916943 BAM harmonized CPTAC3 79dd313f-12b3-4b81-b6dd-b727522ace6c d1879946272985c1222c78a9e585baa8 {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.miRNA-Seq.S13_L001_R1.T C3N-01011 PDA miRNA-Seq tumor CPT0065640006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 249392694 BAM S13_L001_R1 unaligned CPTAC3 44614a05-4ddc-40b5-9c0a-0682ed73c910 5ae065da0686cb93557989480733e4b7 {"aliquot_tag": "ALQ_462a9905", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01011.miRNA-Seq.S25_L002_R1.A C3N-01011 PDA miRNA-Seq tissue_normal CPT0066020009 181119_UNC31-K00269_0165_AH27WCBBXY_ATCACG_S25_L002_R1_001.unaln.bam 204389111 BAM S25_L002_R1 unaligned CPTAC3 5b16dc71-3d94-4704-9bb3-a95d60a7842e 757e9774c1bc0caae51f2a759af386d3 {"aliquot_tag": "ALQ_be6488b4", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.miRNA-Seq.T.hg38 C3N-01011 PDA miRNA-Seq tumor CPT0065640006 bedc811b-a574-4ac6-9264-9900bf4fea4d_mirnaseq_gdc_realn.bam 275660657 BAM harmonized CPTAC3 770101a2-bad8-4a22-b5d1-ec0a37b3b6dc c92c0a76b7206fd0d53d75df0459b59e {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor"} -C3N-01011.RNA-Seq.chimeric.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.chimeric.gdc_realn.bam 35711589 BAM chimeric harmonized CPTAC3 40694274-6a7f-4c1f-ad23-32a66c3595f7 4739b6dc060923a8b0696db657ba202f {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.RNA-Seq.chimeric.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.chimeric.gdc_realn.bam 27652274 BAM chimeric harmonized CPTAC3 0e450fc3-00db-4f50-9485-9767deab4c0c 9ba6060b479ea76272c4f99b00310067 {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor"} -C3N-01011.RNA-Seq.genomic.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.genomic.gdc_realn.bam 9594141525 BAM genomic harmonized CPTAC3 cb97183f-987e-4285-9917-f7a27b3242a4 d66ff41b68e6075614a91c3c0a686b81 {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.RNA-Seq.genomic.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.genomic.gdc_realn.bam 9306443487 BAM genomic harmonized CPTAC3 9b32e657-29df-4b8b-b7a6-fd86087522c2 e4541f92ac41dbb6d73a0226a9756210 {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor"} -C3N-01011.RNA-Seq.S13_L004_R1.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4357361033 FASTQ S13_L004_R1 unaligned CPTAC3 f647f91a-14f2-4b99-b4d7-13a9ec2c2b77 22825c1f1da5265ece7b5ea992565394 {"aliquot_tag": "ALQ_462a9905", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01011.RNA-Seq.S13_L004_R2.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4713123370 FASTQ S13_L004_R2 unaligned CPTAC3 21e97bfd-6735-4b9e-8a15-5012a3699da4 551a61e9ca9f415192006629833fdd0b {"aliquot_tag": "ALQ_462a9905", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01011.RNA-Seq.S9_L003_R1.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3961400843 FASTQ S9_L003_R1 unaligned CPTAC3 14df59ba-a33c-4c06-a797-f354f8f5a49d 52e7d3db167fac9507eb13691e975bde {"aliquot_tag": "ALQ_be6488b4", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.RNA-Seq.S9_L003_R2.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R2_001.fastq.gz 4042640158 FASTQ S9_L003_R2 unaligned CPTAC3 a55dd87b-078c-4637-8554-87d1fe3d3b0c 17ed2864dcfbc27cf04990d00954ded2 {"aliquot_tag": "ALQ_be6488b4", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.RNA-Seq.transcriptome.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.transcriptome.gdc_realn.bam 10740772385 BAM transcriptome harmonized CPTAC3 4bf8958c-0c10-4cb0-955f-29c5dd5eaff9 7a79ce3a974f3b2a8d4fe51ddc93029e {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.RNA-Seq.transcriptome.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.transcriptome.gdc_realn.bam 11754964739 BAM transcriptome harmonized CPTAC3 2dfcfe24-81d4-4866-8cb5-659282958319 61f2adb6778c898ceb69101ecafa90fd {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WGS.A C3N-01011 PDA WGS tissue_normal CPT0066020006 CPT0066020006.WholeGenome.RP-1303.bam 70576796472 BAM aligned CPTAC3 f8a7ec51-c9b3-415d-a3e7-5390d373ae21 bce33782a6d87f5607f547dec89a1a18 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.WGS.A.hg38 C3N-01011 PDA WGS tissue_normal CPT0066020006 ed02f52d-4ce5-48da-ac91-c3accf3056f6_wgs_gdc_realn.bam 102361051125 BAM harmonized CPTAC3 178f18f8-7cd3-434b-b7c9-b0ac5b3d4acd bc78d06685ca214fa56b10497fc56bc4 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.WGS.N C3N-01011 PDA WGS blood_normal CPT0070720002 CPT0070720002.WholeGenome.RP-1303.bam 64796199183 BAM aligned CPTAC3 a51972b0-4958-41b2-a19d-46bb035666f9 633515d4869084481919c7267ab8c24f {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal"} -C3N-01011.WGS.N.hg38 C3N-01011 PDA WGS blood_normal CPT0070720002 2fe6535b-e5dc-47a4-a646-7b014053a3aa_gdc_realn.bam 95917828941 BAM harmonized CPTAC3 a2cc0f67-d0a1-40f9-a57c-049e3c3cbab5 05ced8d05e7bddf09f44e14a86d33013 {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal"} -C3N-01011.WGS.T C3N-01011 PDA WGS tumor CPT0065640009_1 CPT0065640009_1.WholeGenome.RP-1303.bam 116816749796 BAM aligned CPTAC3 b92652f6-3755-48fe-acd8-9dc9aac5b99f e15c5dcf4f9e406746c18b3fd956294e {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WGS.T C3N-01011 PDA WGS tumor CPT0065640009 CPT0065640009.WholeGenome.RP-1303.bam 58576376681 BAM aligned CPTAC3 7eafbb01-d6c0-421d-b1e7-143ef11f6a7d e7261dda7feb564c173c642029769aae {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WGS.T.hg38 C3N-01011 PDA WGS tumor CPT0065640009_1 1c06e887-12a2-4aa6-9ac8-6daee0f8d626_wgs_gdc_realn.bam 172473316950 BAM harmonized CPTAC3 466d0c80-829a-4d2a-921e-c320dfc8dba1 49193ce12cedafd3fabc480f87c6b84e {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WGS.T.hg38 C3N-01011 PDA WGS tumor CPT0065640009 331f1cd5-0c8d-4594-9f92-2364cb839192_gdc_realn.bam 87941309146 BAM harmonized CPTAC3 d3ddbf95-e606-45a5-a37c-628beda589ca 28d96ef3054e3853c4aec69999e6f53d {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WXS.A C3N-01011 PDA WXS tissue_normal CPT0066020006 CPT0066020006.WholeExome.RP-1303.bam 46210556112 BAM aligned CPTAC3 207307a9-1e29-4dbb-ac97-17c088b538e3 c3347acdca4d47502ab83f3c2d147687 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.WXS.A.hg38 C3N-01011 PDA WXS tissue_normal CPT0066020006 ed02f52d-4ce5-48da-ac91-c3accf3056f6_wxs_gdc_realn.bam 62349830085 BAM harmonized CPTAC3 bcfc8152-a698-479b-b03c-4ded84bf1eca cf3cc6f7c17f9a3ec641b01b094fbc68 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01011.WXS.N C3N-01011 PDA WXS blood_normal CPT0070720002 CPT0070720002.WholeExome.RP-1303.bam 37544226586 BAM aligned CPTAC3 ac5513cb-51c7-40ff-bf88-3c456b84b342 9654df03ea3cd28f9323868beb0ef8c5 {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal"} -C3N-01011.WXS.N.hg38 C3N-01011 PDA WXS blood_normal CPT0070720002 2fe6535b-e5dc-47a4-a646-7b014053a3aa_gdc_realn.bam 52577762428 BAM harmonized CPTAC3 d2e3c88a-df8b-4d9c-8c39-bb86017f077e 2e949c870646be389d9a3aeccc115d20 {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal"} -C3N-01011.WXS.T C3N-01011 PDA WXS tumor CPT0065640009_1 CPT0065640009_1.WholeExome.RP-1303.bam 50096236426 BAM aligned CPTAC3 5cb8a429-86ca-4193-a3d0-db916278a229 d1baaf03cdecfdeb4f8f743e7a6ee6b6 {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WXS.T C3N-01011 PDA WXS tumor CPT0065640009 CPT0065640009.WholeExome.RP-1303.bam 29462491515 BAM aligned CPTAC3 cdf09597-4161-4dfb-84fe-99da88f9427d e88df3e0cf86eaedab07cdf5891e10c9 {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WXS.T.hg38 C3N-01011 PDA WXS tumor CPT0065640009_1 1c06e887-12a2-4aa6-9ac8-6daee0f8d626_wxs_gdc_realn.bam 68513067980 BAM harmonized CPTAC3 0171d6cd-6e09-4a21-b80f-16d6945a1305 a7b9238f13ca8bf5e874c8f34bdbabb3 {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor"} -C3N-01011.WXS.T.hg38 C3N-01011 PDA WXS tumor CPT0065640009 331f1cd5-0c8d-4594-9f92-2364cb839192_gdc_realn.bam 40653692486 BAM harmonized CPTAC3 be4da4d1-50e3-47e5-a725-e70048c71d7e 625a55d188745e69673fcf2ee832057c {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor"} -C3N-01012.MethArray.Green.T C3N-01012 PDA Methylation_Array tumor CPT0241320008 203561450041_R01C01_Grn.idat 13676218 IDAT Green NA CPTAC3 842d9fda-2831-46b3-9416-4ed6b476f11a c2ad5af8447adc29f0eb543c1cfc4d5d {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor"} -C3N-01012.MethArray.Red.T C3N-01012 PDA Methylation_Array tumor CPT0241320008 203561450041_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 5a2ad8d9-84d6-4d38-8104-d7918b4ec198 abd24dccc6c128a2db3c7d8ad7eb83ea {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor"} -C3N-01012.miRNA-Seq.S31_L005_R1.T C3N-01012 PDA miRNA-Seq tumor CPT0241320011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTTGA_S31_L005_R1_001.unaln.bam 258753704 BAM S31_L005_R1 unaligned CPTAC3 a3afdd3f-66fd-4520-9cb2-e6778037e6ed df7267ddde86c286034b374088f3841e {"aliquot_tag": "ALQ_8644521c", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01012.miRNA-Seq.T.hg38 C3N-01012 PDA miRNA-Seq tumor CPT0241320011 e14fe70b-915e-44c0-9868-58a2e5e8e3ae_mirnaseq_gdc_realn.bam 290357937 BAM harmonized CPTAC3 ba62fa7d-d00b-446b-b9c4-ab3effd37e53 a68072e0a2684e5943df1981cea2b41d {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor"} -C3N-01012.RNA-Seq.chimeric.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.chimeric.gdc_realn.bam 51171831 BAM chimeric harmonized CPTAC3 7f2f633c-9d55-4b86-ba95-1f495e5a43a2 6f9eb6bc2f9f1c39332c39c8a7dc3ff7 {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor"} -C3N-01012.RNA-Seq.genomic.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.genomic.gdc_realn.bam 11980051529 BAM genomic harmonized CPTAC3 5c0f9ae8-2c35-41b3-a471-98b90bdeab91 68c64beea3768dfd5c19ac1faaa5be5f {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor"} -C3N-01012.RNA-Seq.S29_L008_R1.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R1_001.fastq.gz 5425874563 FASTQ S29_L008_R1 unaligned CPTAC3 8377ab7e-9378-426f-b897-316df8584239 896247f9bd11f052471c4ceb7d9ff077 {"aliquot_tag": "ALQ_8644521c", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01012.RNA-Seq.S29_L008_R2.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R2_001.fastq.gz 6204358818 FASTQ S29_L008_R2 unaligned CPTAC3 d33aabf6-72e4-4c00-ad25-3d3cfd351f5a becf39f19ea61276b70743e47c80b855 {"aliquot_tag": "ALQ_8644521c", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01012.RNA-Seq.transcriptome.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.transcriptome.gdc_realn.bam 16933378838 BAM transcriptome harmonized CPTAC3 4fce4632-2117-45da-99c9-38f6143e4a82 1948f5110cc28c29b22069167ee286a1 {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor"} -C3N-01012.WGS.N C3N-01012 PDA WGS blood_normal CPT0241740002 CPT0241740002.WholeGenome.RP-1303.bam 65390125292 BAM aligned CPTAC3 cf18d82a-e47e-4640-b3f0-dd1dd018aa2c 13a450e63cd8598bd73d67139c60d5a7 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal"} -C3N-01012.WGS.N.hg38 C3N-01012 PDA WGS blood_normal CPT0241740002 999b4985-3f54-41a7-bdd3-8ecf55ba1669_wgs_gdc_realn.bam 95659226700 BAM harmonized CPTAC3 d9f91e6e-0290-4048-8901-a7d91e4ef3ff 6d4dc79ee40ab9468ae491fb751b72a3 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal"} -C3N-01012.WGS.T C3N-01012 PDA WGS tumor CPT0241320008 CPT0241320008.WholeGenome.RP-1303.bam 120310035246 BAM aligned CPTAC3 bea3b03c-edcf-4a22-8473-6a7eda87d3be 152c1e20b8b9cd1104c9b53f4ea9a711 {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor"} -C3N-01012.WGS.T.hg38 C3N-01012 PDA WGS tumor CPT0241320008 ecb04ff6-c2a9-4dd2-a7ad-4003f7602332_wgs_gdc_realn.bam 173619873780 BAM harmonized CPTAC3 a5d5903c-9d1d-4c40-bb27-aa558d4607af b63fa3337d7b353f23d49a8b6fa48ba7 {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor"} -C3N-01012.WXS.N C3N-01012 PDA WXS blood_normal CPT0241740002 CPT0241740002.WholeExome.RP-1303.bam 23858563472 BAM aligned CPTAC3 af0dba07-6d44-4ded-b280-1d6e1b692012 384d2e145875d1c38282e4771abc8832 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal"} -C3N-01012.WXS.N.hg38 C3N-01012 PDA WXS blood_normal CPT0241740002 999b4985-3f54-41a7-bdd3-8ecf55ba1669_wxs_gdc_realn.bam 32940988027 BAM harmonized CPTAC3 9fc21853-b8f0-49d6-a14d-7efc2e5a08a2 5a1ee04196b2f6f05bde7646188d0468 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal"} -C3N-01012.WXS.T C3N-01012 PDA WXS tumor CPT0241320008 CPT0241320008.WholeExome.RP-1303.bam 53825788766 BAM aligned CPTAC3 94722cf8-3799-4575-badf-fffa63295b4b fa770dba428064089deff358a2f3e23d {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor"} -C3N-01012.WXS.T.hg38 C3N-01012 PDA WXS tumor CPT0241320008 ecb04ff6-c2a9-4dd2-a7ad-4003f7602332_wxs_gdc_realn.bam 73603199842 BAM harmonized CPTAC3 b06b0ca4-9d1a-427e-88e9-5c2b39c8e300 991421b9b4bdead0647b9e82d8371f7b {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor"} -C3N-01016.MethArray.Green.A C3N-01016 LUAD Methylation_Array tissue_normal CPT0083810009 203027390105_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9526aa43-7c65-4573-8702-885bdbe8f8b9 3a19169ad2bfdca92201f99e10f6182e {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.MethArray.Green.T C3N-01016 LUAD Methylation_Array tumor CPT0083780006 202184990066_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8242bdf2-6bc8-4935-8cbd-ff6a2d5fbc31 499dde59483df37ffbd50445685ea60b {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor"} -C3N-01016.MethArray.Red.A C3N-01016 LUAD Methylation_Array tissue_normal CPT0083810009 203027390105_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 00d1d979-6a24-466b-a676-c73993da3fa3 5f7397b48c31379d7368072f6a156cf2 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.MethArray.Red.T C3N-01016 LUAD Methylation_Array tumor CPT0083780006 202184990066_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 fdf161b1-4f66-4a6d-88bb-89d5011f9533 e72d8f3115b2e65f7bb4058577ec451d {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor"} -C3N-01016.miRNA-Seq.A.hg38 C3N-01016 LUAD miRNA-Seq tissue_normal CPT0083810006 8c93b6e8-8c7d-458e-aaf2-8faf9b00e9f7_mirnaseq_gdc_realn.bam 234752895 BAM harmonized CPTAC3 ae15538f-3a23-4eb5-aa18-85d25aac2671 2163e9ba80d4608c34c47df65751b202 {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.miRNA-Seq.S6_L006_R1.T C3N-01016 LUAD miRNA-Seq tumor CPT0083780009 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L006_R1_001.unaln.bam 166735210 BAM S6_L006_R1 unaligned CPTAC3 b25fa510-4b12-44c1-82e1-4503d05da958 e51f63bb481bb1ae05005361cea1a713 {"aliquot_tag": "ALQ_ae639d38", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01016.miRNA-Seq.S8_L007_R1.A C3N-01016 LUAD miRNA-Seq tissue_normal CPT0083810006 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L007_R1_001.unaln.bam 215571741 BAM S8_L007_R1 unaligned CPTAC3 19b27bf8-286f-4def-a795-560e9b5cca8c 48107f5c4c5b63fc2aae6cc69a2c5c55 {"aliquot_tag": "ALQ_c29a500d", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.miRNA-Seq.T.hg38 C3N-01016 LUAD miRNA-Seq tumor CPT0083780009 a7e3a6fa-4202-4fe0-bde0-3b985f6dbab0_mirnaseq_gdc_realn.bam 182739238 BAM harmonized CPTAC3 b90c867a-8e34-468c-9607-3edfabce3744 b48eb1ce5cd23b1a1f7db39b6d71c435 {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor"} -C3N-01016.RNA-Seq.chimeric.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.chimeric.gdc_realn.bam 79807136 BAM chimeric harmonized CPTAC3 a261d218-ee7f-4024-8b6b-1d99bd85c3f7 a0feddaffc9632ee4a36686d3765bbba {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.RNA-Seq.chimeric.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.chimeric.gdc_realn.bam 22433354 BAM chimeric harmonized CPTAC3 85f6ed6e-c706-41aa-a8e0-5f304f690b46 0ee9b444f410be6fd03ed9f688786c9f {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor"} -C3N-01016.RNA-Seq.genomic.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.genomic.gdc_realn.bam 8607414589 BAM genomic harmonized CPTAC3 5d0a8d22-e7cc-48cc-9e0b-4744b1e7f17d e91fd275020659921d37e186db62921f {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.RNA-Seq.genomic.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.genomic.gdc_realn.bam 6282101016 BAM genomic harmonized CPTAC3 b7718bc1-975f-4b27-9ac3-636ddc269956 962628b33beec7947d1cd4d9857ca098 {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor"} -C3N-01016.RNA-Seq.S15_L004_R1.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3939725902 FASTQ S15_L004_R1 unaligned CPTAC3 9fe2189b-e03b-42d3-bc1f-19f3829bf551 8057975f528fba65d2313038391f618f {"aliquot_tag": "ALQ_c29a500d", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.RNA-Seq.S15_L004_R2.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 4361112402 FASTQ S15_L004_R2 unaligned CPTAC3 f95401df-78c3-46a4-a075-cdd8bb3856b1 740ef893cbd8c5abc51b12c124f1597a {"aliquot_tag": "ALQ_c29a500d", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.RNA-Seq.S3_L007_R1.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R1_001.fastq.gz 2805732760 FASTQ S3_L007_R1 unaligned CPTAC3 03ec3625-746d-4c60-ad33-cc0e6520e289 0d84bc4017aa50cea3715942543c0660 {"aliquot_tag": "ALQ_ae639d38", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01016.RNA-Seq.S3_L007_R2.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R2_001.fastq.gz 3083737852 FASTQ S3_L007_R2 unaligned CPTAC3 1d4cfed2-ff66-4d0e-8835-596d493dfdf9 16a4dd426301e436038820a9db0e7273 {"aliquot_tag": "ALQ_ae639d38", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01016.RNA-Seq.transcriptome.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.transcriptome.gdc_realn.bam 9923232781 BAM transcriptome harmonized CPTAC3 15b692be-cfce-437c-bc13-5063cde2f620 e83f86a1bbdbb1edde113306b423dd54 {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.RNA-Seq.transcriptome.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.transcriptome.gdc_realn.bam 6173625416 BAM transcriptome harmonized CPTAC3 c50393fd-e6c1-42b0-af8a-6c43682c92b9 ec95a84c566386c6f462d137101c00a1 {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor"} -C3N-01016.WGS.A C3N-01016 LUAD WGS tissue_normal CPT0083810009 CPT0083810009.WholeGenome.RP-1303.bam 61749987217 BAM aligned CPTAC3 3bf3855f-c4a6-4a68-99b0-6ad707795183 17b4179dc8fa2a694d1cb8118d116c08 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.WGS.A.hg38 C3N-01016 LUAD WGS tissue_normal CPT0083810009 a6ab0136-7ec4-4ec9-9f29-415c78515d9c_wgs_gdc_realn.bam 89760042482 BAM harmonized CPTAC3 fa218704-43eb-41b4-a247-b808f483a7a0 193db45e82e056104f05898390d0bee4 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.WGS.N C3N-01016 LUAD WGS blood_normal CPT0083830002 CPT0083830002.WholeGenome.RP-1303.bam 64051103324 BAM aligned CPTAC3 f16ddce0-e481-4956-84e5-d2a3adf141f1 0cd22bd62a3ed0b1185bb3ea86ebea2c {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal"} -C3N-01016.WGS.N.hg38 C3N-01016 LUAD WGS blood_normal CPT0083830002 5fcf480f-d48f-4fd6-940b-051912cd9943_gdc_realn.bam 97369674939 BAM harmonized CPTAC3 57eee6a7-effa-4a86-953f-77dac8c309a5 a80794f6217e6f93f5edb0ab3293c4ab {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal"} -C3N-01016.WGS.T C3N-01016 LUAD WGS tumor CPT0083780006 CPT0083780006.WholeGenome.RP-1303.bam 66807844114 BAM aligned CPTAC3 fc517679-1328-4e74-9a6c-bc08a9c9112e b503dd0bd1ae1b7fc72949d05a1e278c {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor"} -C3N-01016.WGS.T.hg38 C3N-01016 LUAD WGS tumor CPT0083780006 b7314944-d4d1-4f1c-9359-5c631f7c5041_gdc_realn.bam 98232882829 BAM harmonized CPTAC3 fec09b12-5744-4e5d-841c-7cda0c5990d3 f1169b7de526a729250c147e8bbcaeae {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor"} -C3N-01016.WXS.A C3N-01016 LUAD WXS tissue_normal CPT0083810009 CPT0083810009.WholeExome.RP-1303.bam 29674328639 BAM aligned CPTAC3 484e1730-1206-4909-95a3-891880256c03 9e23d2eea76f30dee9f3835c9660fadf {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.WXS.A.hg38 C3N-01016 LUAD WXS tissue_normal CPT0083810009 a6ab0136-7ec4-4ec9-9f29-415c78515d9c_wxs_gdc_realn.bam 41126662381 BAM harmonized CPTAC3 127d5ffc-d163-4fde-80d8-454928db8fe4 78977f80ca1d8893f2b755e9a506f9f5 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01016.WXS.N C3N-01016 LUAD WXS blood_normal CPT0083830002 CPT0083830002.WholeExome.RP-1303.bam 24042489144 BAM aligned CPTAC3 be150b89-b0ee-4833-a13b-13a8b677c21f 10e6b5f779191869c59857ae91784fc5 {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal"} -C3N-01016.WXS.N.hg38 C3N-01016 LUAD WXS blood_normal CPT0083830002 5fcf480f-d48f-4fd6-940b-051912cd9943_gdc_realn.bam 31842930452 BAM harmonized CPTAC3 3b919d7b-c595-4318-b9e2-2ac73303b590 02324a5b53871a98054cf8b5ae7d0789 {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal"} -C3N-01016.WXS.T C3N-01016 LUAD WXS tumor CPT0083780006 CPT0083780006.WholeExome.RP-1303.bam 32533551125 BAM aligned CPTAC3 0960a457-0b3c-41e6-8599-9dba14a17540 213db389e485136cf327a2ca87c50d1b {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor"} -C3N-01016.WXS.T.hg38 C3N-01016 LUAD WXS tumor CPT0083780006 b7314944-d4d1-4f1c-9359-5c631f7c5041_gdc_realn.bam 45058626386 BAM harmonized CPTAC3 4951d2d3-d7b8-4ae0-a4e4-f6b2eb998334 2d890136f42709dc9de4e5156c34d291 {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor"} -C3N-01017.MethArray.Green.A C3N-01017 LSCC Methylation_Array tissue_normal CPT0069900009 203219650165_R03C01_Grn.idat 13676220 IDAT Green NA CPTAC3 4c9514d9-fcd5-416b-be99-763d419be068 ec8f7da7b7486c535f62bd5d3c2be8f4 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.MethArray.Green.T C3N-01017 LSCC Methylation_Array tumor CPT0069890006 202184990008_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6fbea4a5-b7f4-4e0b-95cd-aa947b3ad522 d4228292c0230d6c56e6f4a930e7fffc {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor"} -C3N-01017.MethArray.Red.A C3N-01017 LSCC Methylation_Array tissue_normal CPT0069900009 203219650165_R03C01_Red.idat 13676220 IDAT Red NA CPTAC3 ac1a4155-adbf-41e5-8085-77315a2ce690 badb2aadf37bcf119e9dc1592b5c05b9 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.MethArray.Red.T C3N-01017 LSCC Methylation_Array tumor CPT0069890006 202184990008_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 b25adf68-2029-4b9d-9819-ee084a0b0ea0 954c1f6cff5c39c75b6d1e0fe806b526 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor"} -C3N-01017.miRNA-Seq.A.hg38 C3N-01017 LSCC miRNA-Seq tissue_normal CPT0069900006 382a4a60-11b1-42dd-a81a-7a84c75d40da_mirnaseq_gdc_realn.bam 225983948 BAM harmonized CPTAC3 1284761d-dca2-4fd5-9097-7badbd93f97a 9a682f328cf2737e3a047bbdb53b670a {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.miRNA-Seq.S33_L006_R1.A C3N-01017 LSCC miRNA-Seq tissue_normal CPT0069900006 181113_UNC31-K00269_0164_AH23NNBBXY_GATCAG_S33_L006_R1_001.unaln.bam 204424675 BAM S33_L006_R1 unaligned CPTAC3 0b910566-e13e-433d-9361-75bc14b7bd66 04e9bd970c3cb2c354b91d035271f2ed {"aliquot_tag": "ALQ_855ce764", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.miRNA-Seq.S46_L008_R1.T C3N-01017 LSCC miRNA-Seq tumor CPT0069890009 181012_UNC32-K00270_0124_AH223CBBXY_ATGAGC_S46_L008_R1_001.unaln.bam 209764077 BAM S46_L008_R1 unaligned CPTAC3 2a24427e-fe62-46d6-92a5-be607d7fc025 973d1437aeebaad8f1a33b6184b7309a {"aliquot_tag": "ALQ_d3af4b21", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01017.miRNA-Seq.T.hg38 C3N-01017 LSCC miRNA-Seq tumor CPT0069890009 db52a607-33e0-46e3-843b-70e950d7d4bb_mirnaseq_gdc_realn.bam 240595029 BAM harmonized CPTAC3 820de256-7bd6-41b7-bf7a-055315802484 a1bda4060f740099ef007d73d4d12d61 {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor"} -C3N-01017.RNA-Seq.chimeric.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.chimeric.gdc_realn.bam 35077180 BAM chimeric harmonized CPTAC3 6bce2f71-0b72-4198-85bd-42329ed0114a 66a85aa77bbbf37a7ed85b7c503dbef7 {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.RNA-Seq.chimeric.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.chimeric.gdc_realn.bam 26705329 BAM chimeric harmonized CPTAC3 242c7845-a44c-4aad-ace6-7b6bc010d73a 8bc29e04a3f7d44c0f2d35eb9918c10f {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor"} -C3N-01017.RNA-Seq.genomic.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.genomic.gdc_realn.bam 7716273478 BAM genomic harmonized CPTAC3 dc7e1293-67ff-461c-aea8-42ea83c93346 4d4e675454a51ec3d9a954ac1ac48ee8 {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.RNA-Seq.genomic.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.genomic.gdc_realn.bam 7778510990 BAM genomic harmonized CPTAC3 ca269427-e989-433b-9c8e-d571725d0341 03f7653c41460abd0e60563e0eb15507 {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor"} -C3N-01017.RNA-Seq.S19_L005_R1.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3504193022 FASTQ S19_L005_R1 unaligned CPTAC3 3f3023db-1b21-4122-8036-28c6d2ad20bb faa290801786133a38ba675a1390d748 {"aliquot_tag": "ALQ_855ce764", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.RNA-Seq.S19_L005_R2.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3844337829 FASTQ S19_L005_R2 unaligned CPTAC3 a3928924-74dd-47f0-a936-4b789a057b5a e2e7d52643cced7d447f5189618bb7a4 {"aliquot_tag": "ALQ_855ce764", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.RNA-Seq.S5_L002_R1.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R1_001.fastq.gz 3567465031 FASTQ S5_L002_R1 unaligned CPTAC3 5f1df8b3-0f2f-4951-9960-ffe5648f405a daad6fa5cbf936e2272b19e5275363a6 {"aliquot_tag": "ALQ_d3af4b21", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01017.RNA-Seq.S5_L002_R2.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R2_001.fastq.gz 3828443095 FASTQ S5_L002_R2 unaligned CPTAC3 20e79feb-035d-42ea-9583-e9aa9da6f1d5 934c9511279d389d401da4218e0141e6 {"aliquot_tag": "ALQ_d3af4b21", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01017.RNA-Seq.transcriptome.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.transcriptome.gdc_realn.bam 9778903530 BAM transcriptome harmonized CPTAC3 39049207-ca50-4498-9191-6c66863f9a09 4d038e5bb065dcf7474f30eed0c9ffa7 {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.RNA-Seq.transcriptome.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.transcriptome.gdc_realn.bam 8728528374 BAM transcriptome harmonized CPTAC3 c9e0ce8e-fdee-419d-860f-5dff620c28fd 7cce4990ea24e166ab50cc7d22029e16 {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor"} -C3N-01017.WGS.A C3N-01017 LSCC WGS tissue_normal CPT0069900009 CPT0069900009.WholeGenome.RP-1303.bam 65404963360 BAM aligned CPTAC3 cc742217-0711-43d0-a2fd-341b70595ad0 84eb0f7956f54a7776e71ed26e47a4c8 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.WGS.A.hg38 C3N-01017 LSCC WGS tissue_normal CPT0069900009 77ab1337-2692-4476-bb3f-0b72a3a80b95_wgs_gdc_realn.bam 94421567698 BAM harmonized CPTAC3 cb7d814e-3b60-46db-9563-6f4847abca7c 8afd38a63b7592c6727d073b11af826e {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.WGS.N C3N-01017 LSCC WGS blood_normal CPT0069980002 CPT0069980002.WholeGenome.RP-1303.bam 75335077274 BAM aligned CPTAC3 1c87a114-2b1b-4d4a-bcad-7d37a88c5833 008b7d0a67daee6ac333bda28163b876 {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01017.WGS.N.hg38 C3N-01017 LSCC WGS blood_normal CPT0069980002 f7c268a1-b7d6-4e9a-891d-55de4dccae4a_gdc_realn.bam 113216154553 BAM harmonized CPTAC3 0a6de050-ae97-46ce-af90-687cab44d66d 5b17e081fa3dcc2daf9f689c4bf90d1d {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01017.WGS.T C3N-01017 LSCC WGS tumor CPT0069890006 CPT0069890006.WholeGenome.RP-1303.bam 74765863582 BAM aligned CPTAC3 db5313f1-a48d-45a4-a6a9-2ba5f4a9fe75 8a2abf61de28bba9eaa823380866fd64 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor"} -C3N-01017.WGS.T.hg38 C3N-01017 LSCC WGS tumor CPT0069890006 e4f28c38-427f-4133-9424-10f35a261de4_gdc_realn.bam 112034013327 BAM harmonized CPTAC3 7696b433-05b6-497f-b513-f1790149787d 3d7648d9f29da39ac86ab7cc6c36a7d6 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor"} -C3N-01017.WXS.A C3N-01017 LSCC WXS tissue_normal CPT0069900009 CPT0069900009.WholeExome.RP-1303.bam 30906450140 BAM aligned CPTAC3 b5521444-8346-4c50-8f24-97d61ac091d4 b5c926fe2ab8765ec22ac12e90376d93 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.WXS.A.hg38 C3N-01017 LSCC WXS tissue_normal CPT0069900009 77ab1337-2692-4476-bb3f-0b72a3a80b95_wxs_gdc_realn.bam 42077182076 BAM harmonized CPTAC3 4018c39a-2ac4-4f5b-8b4b-6508618e8ec8 345f1f99e46f24fd469570c40f3d31fb {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01017.WXS.N C3N-01017 LSCC WXS blood_normal CPT0069980002 CPT0069980002.WholeExome.RP-1303.bam 32160617568 BAM aligned CPTAC3 4ba0beee-bf5c-43d4-bde3-12d735134ac4 11b14394905a97d2eedc16cea5797878 {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01017.WXS.N.hg38 C3N-01017 LSCC WXS blood_normal CPT0069980002 f7c268a1-b7d6-4e9a-891d-55de4dccae4a_gdc_realn.bam 44133525864 BAM harmonized CPTAC3 c8f97c22-a5e5-4a29-82ac-94a83be13c2c 293d5ba1c90715b77bb91a1c5d0f9bb3 {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01017.WXS.T C3N-01017 LSCC WXS tumor CPT0069890006 CPT0069890006.WholeExome.RP-1303.bam 27496143532 BAM aligned CPTAC3 7b517054-0228-400d-8ecb-6e5caee4c08a 4e2ad613f2d69b6e5459eb884486f462 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor"} -C3N-01017.WXS.T.hg38 C3N-01017 LSCC WXS tumor CPT0069890006 e4f28c38-427f-4133-9424-10f35a261de4_gdc_realn.bam 38182844792 BAM harmonized CPTAC3 d7ebebd0-c42f-4400-8ad9-45dc1e698712 f3488a430cfb7b20a1fb128a53f3217c {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor"} -C3N-01018.MethArray.Green.A C3N-01018 LSCC Methylation_Array tissue_normal CPT0104950009 203219650218_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 756f075d-558b-44ef-b93f-01536bacb8dd e8def0fc3962c164d64d005ae12e3711 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.MethArray.Green.T C3N-01018 LSCC Methylation_Array tumor CPT0104930009 202234380051_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4ea8b7a5-b36e-498d-9af1-b8f5769d37e4 684f60185cf7d8bb0a30b8ef494d02e6 {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor"} -C3N-01018.MethArray.Red.A C3N-01018 LSCC Methylation_Array tissue_normal CPT0104950009 203219650218_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 4b949694-253b-4a11-9f81-df2a0ea5abd2 d399f22f8609a9e570ccb6e64d085927 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.MethArray.Red.T C3N-01018 LSCC Methylation_Array tumor CPT0104930009 202234380051_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 525982d4-ea92-40dd-a708-df8ff5e2851b 19786576b288b985a7f171ec061f6d0c {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor"} -C3N-01018.miRNA-Seq.A.hg38 C3N-01018 LSCC miRNA-Seq tissue_normal CPT0104950006 d1d7efb0-e63d-4dd4-a044-b875c419a2f3_mirnaseq_gdc_realn.bam 273726361 BAM harmonized CPTAC3 f3d7c67a-679d-43c7-b055-7b5f0d894c67 178fda44a347ee1d477ec9efc591eafd {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.miRNA-Seq.S31_L004_R1.A C3N-01018 LSCC miRNA-Seq tissue_normal CPT0104950006 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L004_R1_001.unaln.bam 243249490 BAM S31_L004_R1 unaligned CPTAC3 73009847-fcc6-41bc-b167-ca0574f8750e b28c9408130aa5d1d30e14dc59d77aa8 {"aliquot_tag": "ALQ_fd7f1410", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.miRNA-Seq.S45_L007_R1.T C3N-01018 LSCC miRNA-Seq tumor CPT0104930006 181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L007_R1_001.unaln.bam 181235668 BAM S45_L007_R1 unaligned CPTAC3 bc2c7ec3-30e5-4426-b2a7-3b6223f2085f 266f97f1f80b4dd705185191f8020a69 {"aliquot_tag": "ALQ_723fe1b0", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01018.miRNA-Seq.T.hg38 C3N-01018 LSCC miRNA-Seq tumor CPT0104930006 c822dd30-9e9b-4573-9455-3c40ed138f78_mirnaseq_gdc_realn.bam 198530314 BAM harmonized CPTAC3 5c4797b0-3447-4af1-9380-388fa37dde41 961e00b72459fbddfdce8b41c8133e16 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor"} -C3N-01018.RNA-Seq.chimeric.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.chimeric.gdc_realn.bam 72282370 BAM chimeric harmonized CPTAC3 e3881fa3-1e6b-40a4-bf6f-8174b4b51141 538f9ba4ceacebb334ee683b7b6ff8c0 {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.RNA-Seq.chimeric.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.chimeric.gdc_realn.bam 37766587 BAM chimeric harmonized CPTAC3 b76490dd-5f82-4e52-80b2-439e4de1fbd6 bdf06ec70f1aeb47f7778cde84c00dd2 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor"} -C3N-01018.RNA-Seq.genomic.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.genomic.gdc_realn.bam 9689028429 BAM genomic harmonized CPTAC3 8a7d8902-3f65-4142-b7d9-f031ddf41c43 84efd9ff42fdf1af56e3282a5f44d101 {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.RNA-Seq.genomic.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.genomic.gdc_realn.bam 9436247146 BAM genomic harmonized CPTAC3 013aaf05-8f58-4b86-ab46-e84200076aef 1fa343e57d81540402af5a5c1e1bfa25 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor"} -C3N-01018.RNA-Seq.S17_L005_R1.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4226217192 FASTQ S17_L005_R1 unaligned CPTAC3 a4de5c30-791c-4edc-930a-d47ecf694598 5fdf17bfe701e3067d3f46bd84e94e82 {"aliquot_tag": "ALQ_723fe1b0", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01018.RNA-Seq.S17_L005_R2.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836971452 FASTQ S17_L005_R2 unaligned CPTAC3 c3d91e6a-042c-459f-ba03-cdaf097640e3 69b85c4a6c19f44c8c040d13bfa7d0c1 {"aliquot_tag": "ALQ_723fe1b0", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01018.RNA-Seq.S2_L007_R1.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R1_001.fastq.gz 4416913150 FASTQ S2_L007_R1 unaligned CPTAC3 30102117-9e4f-4b22-9bd1-b129c1ff2d1a e6c93562ebeeaa5e29dbd90c92c1d34a {"aliquot_tag": "ALQ_fd7f1410", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.RNA-Seq.S2_L007_R2.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R2_001.fastq.gz 4874949133 FASTQ S2_L007_R2 unaligned CPTAC3 29a968a9-6cfc-4815-ae9c-06423a57d425 b0fd4b2f5863ccbf1a928bee368ffb43 {"aliquot_tag": "ALQ_fd7f1410", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.RNA-Seq.transcriptome.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.transcriptome.gdc_realn.bam 11552301657 BAM transcriptome harmonized CPTAC3 2458e96b-f860-447d-8189-2c34f723676d 9dff8b8bc81526bdd90e53235c4bb2aa {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.RNA-Seq.transcriptome.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.transcriptome.gdc_realn.bam 12173696406 BAM transcriptome harmonized CPTAC3 cce5e8b1-5c81-4b0b-94d5-690864438c51 33124697b6b4f01ca1d68bf1eff75738 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor"} -C3N-01018.WGS.A C3N-01018 LSCC WGS tissue_normal CPT0104950009 CPT0104950009.WholeGenome.RP-1303.bam 62748790744 BAM aligned CPTAC3 442e1896-1199-46a5-b935-da47bb5f839b 51f955a1681d15b51557f9fda97e7ed2 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.WGS.A.hg38 C3N-01018 LSCC WGS tissue_normal CPT0104950009 159fc77a-455a-46de-9c44-faa86e646fc2_wgs_gdc_realn.bam 91926512838 BAM harmonized CPTAC3 219aa7fc-a48b-4a77-8d08-b35109a33e20 2c3a8877c051d3483be6be9bfd7c8c1b {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.WGS.N C3N-01018 LSCC WGS blood_normal CPT0107500002 CPT0107500002.WholeGenome.RP-1303.bam 64039399353 BAM aligned CPTAC3 a0f1fdc4-6bfd-48d6-86fd-bff9a8d91fa2 24c045d5f4552b40b6bcadbb18a04037 {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01018.WGS.N.hg38 C3N-01018 LSCC WGS blood_normal CPT0107500002 32cbd60f-52ec-4d82-890e-098dcb8e0c6f_wgs_gdc_realn.bam 94743426427 BAM harmonized CPTAC3 4f7a0c9b-8708-4f8f-8de2-1ea3a7a6b13a cad72ee75ee7862a05738b3ef96e7e21 {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01018.WGS.T C3N-01018 LSCC WGS tumor CPT0104930009 CPT0104930009.WholeGenome.RP-1303.bam 64751029559 BAM aligned CPTAC3 f1480052-69b2-470e-a9ed-6bd89f8a01a5 0db96c40ca5887b7a06e448e7d22fa50 {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor"} -C3N-01018.WGS.T.hg38 C3N-01018 LSCC WGS tumor CPT0104930009 267cd1b6-4e5c-4cc7-9909-d0a3a7132719_wgs_gdc_realn.bam 96362628243 BAM harmonized CPTAC3 05fe41a8-401b-47a2-82be-b7b9420a2671 6e0fb957241b162ec8c97d3528b78df0 {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor"} -C3N-01018.WXS.A C3N-01018 LSCC WXS tissue_normal CPT0104950009 CPT0104950009.WholeExome.RP-1303.bam 30660019892 BAM aligned CPTAC3 9d9f0af5-c658-4906-a601-f923b71ad2cb c5511ffd410a6ccc13624896f3544b65 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.WXS.A.hg38 C3N-01018 LSCC WXS tissue_normal CPT0104950009 159fc77a-455a-46de-9c44-faa86e646fc2_wxs_gdc_realn.bam 41694356585 BAM harmonized CPTAC3 1e09caf3-763a-4cd9-8499-b27e49e17534 165fb5b6dc58d85409770c6ac23318a6 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01018.WXS.N C3N-01018 LSCC WXS blood_normal CPT0107500002 CPT0107500002.WholeExome.RP-1303.bam 38353796999 BAM aligned CPTAC3 f768e522-375e-4f30-80db-f3946267f4d8 b468ac27928f6402ba1f32098f474933 {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01018.WXS.N.hg38 C3N-01018 LSCC WXS blood_normal CPT0107500002 32cbd60f-52ec-4d82-890e-098dcb8e0c6f_wxs_gdc_realn.bam 52895464723 BAM harmonized CPTAC3 19750858-9f8a-45c7-86f3-21042eac7e55 7449d382b2157701d5594f9b7eae731a {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01018.WXS.T C3N-01018 LSCC WXS tumor CPT0104930009 CPT0104930009.WholeExome.RP-1303.bam 38292481108 BAM aligned CPTAC3 064bf6da-ac66-4d13-a56c-4c19175529d9 815a6dd6c9b4dd694d1ba509eca752ec {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor"} -C3N-01018.WXS.T.hg38 C3N-01018 LSCC WXS tumor CPT0104930009 267cd1b6-4e5c-4cc7-9909-d0a3a7132719_wxs_gdc_realn.bam 52053567840 BAM harmonized CPTAC3 d2a6cd4d-1f0a-4794-b356-45cfe9f20f4c 604d6442c870b18224f6ebd779685aef {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor"} -C3N-01019.MethArray.Green.A C3N-01019 LUAD Methylation_Array tissue_normal CPT0117700009 203028200034_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6493abe5-7138-43e0-86ef-4f3f8bcb9758 98e35bbc2b1d7a3c2773860e90a0146d {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.MethArray.Green.T C3N-01019 LUAD Methylation_Array tumor CPT0117680009 202234380102_R02C01_Grn.idat 13676232 IDAT Green NA CPTAC3 ba904cf0-3db4-4bbb-8f9c-f4a4c7b42a74 6a1c42c504e4d66550aeb6d29489f77f {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor"} -C3N-01019.MethArray.Red.A C3N-01019 LUAD Methylation_Array tissue_normal CPT0117700009 203028200034_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 59aa7666-d099-4db5-aa76-20dbe29ad6a8 ad140dc03f9ee1b83d77c60a2c923827 {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.MethArray.Red.T C3N-01019 LUAD Methylation_Array tumor CPT0117680009 202234380102_R02C01_Red.idat 13676232 IDAT Red NA CPTAC3 ae905b25-c650-49a0-abba-3f1b6ad834ca 93fc889889d4702008e3f8bfb66995c5 {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor"} -C3N-01019.miRNA-Seq.A.hg38 C3N-01019 LUAD miRNA-Seq tissue_normal CPT0117700006 a3cfb1f7-bccd-41b0-b619-fa6d664b265f_mirnaseq_gdc_realn.bam 285421540 BAM harmonized CPTAC3 c2ccaa2b-0d29-4dc7-8d91-e13774e016ff b36497a8faa3f6d288dd4ac0f49d9535 {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.miRNA-Seq.S1_L004_R1.T C3N-01019 LUAD miRNA-Seq tumor CPT0117680006 181119_UNC31-K00269_0165_AH27WCBBXY_ACTGAT_S1_L004_R1_001.unaln.bam 269200601 BAM S1_L004_R1 unaligned CPTAC3 e1c7f75a-e5fd-44a7-a20d-65d676fdc50a 03506b32aaaaa08a150e2d48443059b3 {"aliquot_tag": "ALQ_9fb7877", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01019.miRNA-Seq.S23_L005_R1.A C3N-01019 LUAD miRNA-Seq tissue_normal CPT0117700006 181108_UNC31-K00269_0162_AH255GBBXY_TCGAAG_S23_L005_R1_001.unaln.bam 258807860 BAM S23_L005_R1 unaligned CPTAC3 8adaa6c2-e3c3-43d6-9a08-3a20367e15bd 4995b0d21222094ad805cb6e104f7753 {"aliquot_tag": "ALQ_f2d7e013", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.miRNA-Seq.T.hg38 C3N-01019 LUAD miRNA-Seq tumor CPT0117680006 ca9e198c-01f2-4a1d-b2d7-1f1ff820d5d8_mirnaseq_gdc_realn.bam 291063049 BAM harmonized CPTAC3 2655a889-d465-42bf-92ec-47396bd8c4da 43ab9003b942bbf67ef645efab7a53c6 {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor"} -C3N-01019.RNA-Seq.chimeric.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.chimeric.gdc_realn.bam 134771467 BAM chimeric harmonized CPTAC3 0bd2a473-1d1e-402b-a907-708f53bd6f58 66f65c9a2773357a95ac2ed7a0999f8d {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.RNA-Seq.chimeric.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.chimeric.gdc_realn.bam 76293964 BAM chimeric harmonized CPTAC3 a169f2af-60d3-4a0a-865a-c55f2df0bc0f 3e6bcdc6150d6e4eaf02844ca6c981ae {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor"} -C3N-01019.RNA-Seq.genomic.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.genomic.gdc_realn.bam 8666489663 BAM genomic harmonized CPTAC3 20585263-4f89-45b4-aada-1aaf4b181df4 c32226ee8ff3eaedfa9ccf04c4d1186b {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.RNA-Seq.genomic.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.genomic.gdc_realn.bam 8667874933 BAM genomic harmonized CPTAC3 adabcb4b-fb81-4928-b54a-af5de8a64798 8e3f0dd159212775bae232395b68d3dd {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor"} -C3N-01019.RNA-Seq.S4_L001_R1.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R1_001.fastq.gz 4202397956 FASTQ S4_L001_R1 unaligned CPTAC3 2428d363-4687-4ce3-8a94-b146fdf83a11 985d98e53de7e9d333bf6fbd53a18a1b {"aliquot_tag": "ALQ_f2d7e013", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.RNA-Seq.S4_L001_R2.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R2_001.fastq.gz 4600676738 FASTQ S4_L001_R2 unaligned CPTAC3 e301ad57-81f8-4c52-8227-2762388038a8 ec4ceca55a7f76be9edf41044417f7c1 {"aliquot_tag": "ALQ_f2d7e013", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.RNA-Seq.S9_L003_R1.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R1_001.fastq.gz 3923610075 FASTQ S9_L003_R1 unaligned CPTAC3 71626e11-461f-45a9-a78d-3728a072deaa ed815c179b0ec7b2f1d777541eeef735 {"aliquot_tag": "ALQ_9fb7877", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01019.RNA-Seq.S9_L003_R2.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R2_001.fastq.gz 4369741544 FASTQ S9_L003_R2 unaligned CPTAC3 12608043-b64f-44c5-bbba-8795eb26d1a7 cb100ac8af60f599d73c25fe841691a7 {"aliquot_tag": "ALQ_9fb7877", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01019.RNA-Seq.transcriptome.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.transcriptome.gdc_realn.bam 10275634752 BAM transcriptome harmonized CPTAC3 6e4cf32f-6c11-4b53-bcfa-45dcdc415fce f15dcbb3581e570026d0a02c04df5db0 {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.RNA-Seq.transcriptome.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.transcriptome.gdc_realn.bam 11146920650 BAM transcriptome harmonized CPTAC3 84156c71-f024-40c4-8f7e-5ef33474ba12 f4fc2510c8fa450ad17fd63c3bba8a0d {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor"} -C3N-01019.WGS.A C3N-01019 LUAD WGS tissue_normal CPT0117700009 CPT0117700009.WholeGenome.RP-1303.bam 65276340698 BAM aligned CPTAC3 cc832662-73c7-4eea-9cef-2f6ab334de4b 450a47c487d5d4e83956b68e0cd5004e {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.WGS.A.hg38 C3N-01019 LUAD WGS tissue_normal CPT0117700009 90b0c8c6-9e8d-4015-8c68-3a96adee4184_wgs_gdc_realn.bam 95671822675 BAM harmonized CPTAC3 344949ad-1a00-4dfa-8a50-45f8dee29ada 666efe5d3a13e01deb17ce4f2e3247c6 {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.WGS.N C3N-01019 LUAD WGS blood_normal CPT0118910002 CPT0118910002.WholeGenome.RP-1303.bam 61034871670 BAM aligned CPTAC3 cd783fc6-feef-49ab-b2bf-3e7f7d7ae464 76368fc7cd53f3ee2257fcff3d7413eb {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-01019.WGS.N.hg38 C3N-01019 LUAD WGS blood_normal CPT0118910002 2fd642b2-49e4-47ed-aa09-e55d1f01ec59_wgs_gdc_realn.bam 90294215581 BAM harmonized CPTAC3 cd1abc83-764b-4f89-abf0-b43b4f928871 8ef339209a66f22cf1a57b02daf4ff48 {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-01019.WGS.T C3N-01019 LUAD WGS tumor CPT0117680009 CPT0117680009.WholeGenome.RP-1303.bam 65261143082 BAM aligned CPTAC3 b72a22db-0c45-4b49-a681-b1c59911534f 25215f7ffdaf626ff51b934b05f08de3 {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor"} -C3N-01019.WGS.T.hg38 C3N-01019 LUAD WGS tumor CPT0117680009 bf84a979-446c-47ae-98e4-c4bbb443e928_wgs_gdc_realn.bam 97078263484 BAM harmonized CPTAC3 e1bc2695-c010-4142-91f0-dc856496588b 046a7e2f3750ceb579a215390ec532e9 {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor"} -C3N-01019.WXS.A C3N-01019 LUAD WXS tissue_normal CPT0117700009 CPT0117700009.WholeExome.RP-1303.bam 33062851966 BAM aligned CPTAC3 10762702-d682-4fc4-aa39-426daef3d7a2 47225ba9629d78323474b14748843e52 {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.WXS.A.hg38 C3N-01019 LUAD WXS tissue_normal CPT0117700009 90b0c8c6-9e8d-4015-8c68-3a96adee4184_wxs_gdc_realn.bam 44483135862 BAM harmonized CPTAC3 99d90ef5-e5d3-49fb-be96-5db763123adc 29728cd954daa6243e8db37376db36dd {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01019.WXS.N C3N-01019 LUAD WXS blood_normal CPT0118910002 CPT0118910002.WholeExome.RP-1303.bam 32613826701 BAM aligned CPTAC3 e4dab2ab-907b-49f9-8b86-67af3a3484ec f013ac5187b4de3420abb21c461c01c2 {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-01019.WXS.N.hg38 C3N-01019 LUAD WXS blood_normal CPT0118910002 2fd642b2-49e4-47ed-aa09-e55d1f01ec59_wxs_gdc_realn.bam 43124318089 BAM harmonized CPTAC3 153f503c-3d72-491c-b851-081b86a14f54 16be1dc1714633b5ea1fb1c2e67f9764 {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-01019.WXS.T C3N-01019 LUAD WXS tumor CPT0117680009 CPT0117680009.WholeExome.RP-1303.bam 25226562449 BAM aligned CPTAC3 d76ac4ff-7f26-4f09-9e53-b99492be980a 6ed58f8a478d74439ca1e55d2c3cd57e {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor"} -C3N-01019.WXS.T.hg38 C3N-01019 LUAD WXS tumor CPT0117680009 bf84a979-446c-47ae-98e4-c4bbb443e928_wxs_gdc_realn.bam 33899352637 BAM harmonized CPTAC3 16373001-dc4a-42d6-9042-944b0cb8fd38 8ae1c5a4dffc877d721f1941dba96e3c {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor"} -C3N-01020.MethArray.Green.A C3N-01020 LSCC Methylation_Array tissue_normal CPT0117770006 203219650003_R01C01_Grn.idat 13676220 IDAT Green NA CPTAC3 731eba33-7344-41a4-8fd5-cef32ca9f09d 8c3a7b617e6ad33a08e6164b4f63f73a {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.MethArray.Green.T C3N-01020 LSCC Methylation_Array tumor CPT0117720009 203219750071_R01C01_Grn.idat 13676219 IDAT Green NA CPTAC3 1a94d765-b6ec-438d-adf7-1aeef2ce50a3 2e83b392b63b885e148b59880f47e0da {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor"} -C3N-01020.MethArray.Red.A C3N-01020 LSCC Methylation_Array tissue_normal CPT0117770006 203219650003_R01C01_Red.idat 13676220 IDAT Red NA CPTAC3 296ed9aa-09b8-40b4-9d03-3502bf99bd72 c8f74e66e6e185fde7fedb483fe72946 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.MethArray.Red.T C3N-01020 LSCC Methylation_Array tumor CPT0117720009 203219750071_R01C01_Red.idat 13676219 IDAT Red NA CPTAC3 7b01dc2c-dc8c-46c2-852d-7a76342003a3 4cdf511506b3ecb71707987ac083a213 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor"} -C3N-01020.miRNA-Seq.A.hg38 C3N-01020 LSCC miRNA-Seq tissue_normal CPT0117770009 b00a67a1-4d3b-431e-935b-04992e275cc9_mirnaseq_gdc_realn.bam 353364493 BAM harmonized CPTAC3 3f05d0a9-a9b1-4fde-b898-188a1a360f23 c0801832d654a44e64b0c2c745544b03 {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.miRNA-Seq.S38_L002_R1.A C3N-01020 LSCC miRNA-Seq tissue_normal CPT0117770009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTATAC_S38_L002_R1_001.unaln.bam 321565264 BAM S38_L002_R1 unaligned CPTAC3 d24c7e10-d922-42ad-a7e4-39ef465747b2 27163f918325f4d80d296b75b8fb2f8c {"aliquot_tag": "ALQ_d0482192", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.miRNA-Seq.S6_L001_R1.T C3N-01020 LSCC miRNA-Seq tumor CPT0117720006 181219_UNC31-K00269_0173_BHYGJJBBXX_GCCAAT_S6_L001_R1_001.unaln.bam 293734798 BAM S6_L001_R1 unaligned CPTAC3 fd8ef1e7-794a-49d0-8df7-d7a7d5e6c29f 99258f988843c6d8008ed4d64542df47 {"aliquot_tag": "ALQ_8817b373", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01020.miRNA-Seq.T.hg38 C3N-01020 LSCC miRNA-Seq tumor CPT0117720006 2b0a3602-d13b-43c4-9f99-610dec4fcf96_mirnaseq_gdc_realn.bam 317669156 BAM harmonized CPTAC3 c20fb282-03f1-49ff-9d4a-f3242e53c060 94d4e513aaa236bc153b50b677d55315 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor"} -C3N-01020.RNA-Seq.chimeric.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.chimeric.gdc_realn.bam 28261150 BAM chimeric harmonized CPTAC3 bc035c32-3925-45c8-a840-0a097c4767c3 7c30773492ad49bcb413531eb7c0e70d {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.RNA-Seq.chimeric.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.chimeric.gdc_realn.bam 31802827 BAM chimeric harmonized CPTAC3 15961d49-7425-4418-89fa-912cfd8bf469 8e6ed0485f6679f0e53877f7381e2505 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor"} -C3N-01020.RNA-Seq.genomic.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.genomic.gdc_realn.bam 9257620478 BAM genomic harmonized CPTAC3 8221d93e-9e82-4b33-9244-76deb9389bfe 374c129a011df7e809d68c62d510accd {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.RNA-Seq.genomic.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.genomic.gdc_realn.bam 9518227285 BAM genomic harmonized CPTAC3 a18ea587-1761-47ec-b0a0-6e32d92fc3bc a60a10fca8147ecf9ab6851497cced14 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor"} -C3N-01020.RNA-Seq.S21_L006_R1.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3767826549 FASTQ S21_L006_R1 unaligned CPTAC3 eb0c01cb-bc87-493f-87ab-db4c087a9f63 4013675b85a21a3e61f8139331659406 {"aliquot_tag": "ALQ_d0482192", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.RNA-Seq.S21_L006_R2.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3930483443 FASTQ S21_L006_R2 unaligned CPTAC3 865cf6e7-ff53-4b09-baef-56bbad087e8c 52a1f92e25a1d49716ac3a783a65ff07 {"aliquot_tag": "ALQ_d0482192", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.RNA-Seq.S22_L006_R1.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4158465649 FASTQ S22_L006_R1 unaligned CPTAC3 87b9e4e2-6b01-4f3a-9473-eae51b82d31b d90bf682169573cd2448448260bdc5af {"aliquot_tag": "ALQ_8817b373", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01020.RNA-Seq.S22_L006_R2.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4444860378 FASTQ S22_L006_R2 unaligned CPTAC3 8fd4b92b-fff9-48ac-86d1-2d61ebfe8b86 0a10087fc090e6b9972a1d55707153cf {"aliquot_tag": "ALQ_8817b373", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01020.RNA-Seq.transcriptome.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.transcriptome.gdc_realn.bam 9825633344 BAM transcriptome harmonized CPTAC3 a6779e56-5e09-43f8-b774-fa274e8aedf8 366ac736735ac4e76620a2b65f39a1a6 {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.RNA-Seq.transcriptome.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.transcriptome.gdc_realn.bam 10542938802 BAM transcriptome harmonized CPTAC3 5377b6e1-99e2-497b-9476-8c10e4595d25 b08c2ad1b48b0e1a5fe5caf91b8a40f3 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor"} -C3N-01020.WGS.A C3N-01020 LSCC WGS tissue_normal CPT0117770006 CPT0117770006.WholeGenome.RP-1303.bam 59364857670 BAM aligned CPTAC3 cf365a47-9a57-4b22-8017-56dde6977b4b 914261d2792fc9cef95757bdfb3ad784 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.WGS.A.hg38 C3N-01020 LSCC WGS tissue_normal CPT0117770006 29543f7c-4933-4205-8775-181c20696cf6_wgs_gdc_realn.bam 86355184819 BAM harmonized CPTAC3 ae17f21e-13a6-4dd1-a78b-7d29c61e0e25 545f6b97bc1c80897247255d8779d28f {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.WGS.N C3N-01020 LSCC WGS blood_normal CPT0118970002 CPT0118970002.WholeGenome.RP-1303.bam 59455765527 BAM aligned CPTAC3 3ad0e3bb-567b-4c61-b3c9-1a4a5cc8f826 c4734b4874535067ea5376750528547e {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01020.WGS.N.hg38 C3N-01020 LSCC WGS blood_normal CPT0118970002 3a7b901e-d06f-42da-9914-eef74275e002_wgs_gdc_realn.bam 87425000059 BAM harmonized CPTAC3 7c748ffc-76da-402c-ac35-3eacdffed03e 334dc703493f68868051b56405d567fd {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01020.WGS.T C3N-01020 LSCC WGS tumor CPT0117720009 CPT0117720009.WholeGenome.RP-1303.bam 60590809549 BAM aligned CPTAC3 04780cf2-9283-451f-8b18-57fdfe443d3b fa5ebdddd421ce2f70219d4c244ab1bf {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor"} -C3N-01020.WGS.T.hg38 C3N-01020 LSCC WGS tumor CPT0117720009 61e19b63-df4f-459e-9ca0-97e943d855d9_wgs_gdc_realn.bam 88537581155 BAM harmonized CPTAC3 773a7c69-6ed0-4b7b-9094-8759381c5a11 e06124c472c97dbc61615c190eb44ec6 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor"} -C3N-01020.WXS.A C3N-01020 LSCC WXS tissue_normal CPT0117770006 CPT0117770006.WholeExome.RP-1303.bam 23995671241 BAM aligned CPTAC3 014de518-ccab-4979-a3c1-09a8d4095662 2d8b79c8df5e9506802c04eb4a873db0 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.WXS.A.hg38 C3N-01020 LSCC WXS tissue_normal CPT0117770006 29543f7c-4933-4205-8775-181c20696cf6_wxs_gdc_realn.bam 33052637657 BAM harmonized CPTAC3 1b5394fc-d2d4-4e0e-8049-1f2b8e9aba49 087c2c36737c1628c63d4986e87ae892 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01020.WXS.N C3N-01020 LSCC WXS blood_normal CPT0118970002 CPT0118970002.WholeExome.RP-1303.bam 29596669907 BAM aligned CPTAC3 de4573cb-a6fc-4556-9566-71fadb8381d7 60ff419ee67931d79ad5f90fdba85c1d {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01020.WXS.N.hg38 C3N-01020 LSCC WXS blood_normal CPT0118970002 3a7b901e-d06f-42da-9914-eef74275e002_wxs_gdc_realn.bam 41103495021 BAM harmonized CPTAC3 b768e63b-8d6f-4162-bdf2-2b22861890de ae83d732c93ef9b39ccc25ad3f64691a {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01020.WXS.T C3N-01020 LSCC WXS tumor CPT0117720009 CPT0117720009.WholeExome.RP-1303.bam 20752341201 BAM aligned CPTAC3 adb6a4fe-47a8-4f7e-a7c9-b40ceaf06649 32403bd93aeb8652cd14c5cfb1f42640 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor"} -C3N-01020.WXS.T.hg38 C3N-01020 LSCC WXS tumor CPT0117720009 61e19b63-df4f-459e-9ca0-97e943d855d9_wxs_gdc_realn.bam 28644766104 BAM harmonized CPTAC3 98bded88-48e5-4719-a4f0-105276d13bd2 1b5cf85006b1a2e39c147d477f68a507 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor"} -C3N-01021.MethArray.Green.A C3N-01021 LUAD Methylation_Array tissue_normal CPT0105010010 203027390028_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 725eca74-82f6-4c3c-b7fc-ab8928f7e7e2 a6f5b67e618badfc4fb35beda4423659 {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.MethArray.Green.T C3N-01021 LUAD Methylation_Array tumor CPT0104970009 202234370119_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 b452caf9-d265-4e5e-abea-ec5e2829e6df 0371175be862aafc10b2cbdbe00303ea {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor"} -C3N-01021.MethArray.Red.A C3N-01021 LUAD Methylation_Array tissue_normal CPT0105010010 203027390028_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 a773b78e-9f9a-4f0e-ab99-9568e77b8d98 3f1e1bcf8ace6638222ccf79010b701e {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.MethArray.Red.T C3N-01021 LUAD Methylation_Array tumor CPT0104970009 202234370119_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 f8bb1ebe-ac45-4692-ba91-9471fd9972f4 8877e7c854ec7fb58acf01e1195acb59 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor"} -C3N-01021.miRNA-Seq.A.hg38 C3N-01021 LUAD miRNA-Seq tissue_normal CPT0105010007 b550490b-3daa-4cab-a605-5429fa8efe63_mirnaseq_gdc_realn.bam 198926766 BAM harmonized CPTAC3 21155fa7-3f12-4c27-a069-2f958b1e59b5 64dd6065a2ce8f415e9453e14104a86c {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.miRNA-Seq.S40_L002_R1.A C3N-01021 LUAD miRNA-Seq tissue_normal CPT0105010007 181108_UNC31-K00269_0163_BH23TVBBXY_CTCAGA_S40_L002_R1_001.unaln.bam 175194172 BAM S40_L002_R1 unaligned CPTAC3 7fb6e1d1-fcdf-4739-af38-df515bbb9f52 5d862d1a9f4066e5901ff239780321b2 {"aliquot_tag": "ALQ_fe80d83a", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.miRNA-Seq.S46_L007_R1.T C3N-01021 LUAD miRNA-Seq tumor CPT0104970006 181108_UNC31-K00269_0163_BH23TVBBXY_TCCCGA_S46_L007_R1_001.unaln.bam 188444789 BAM S46_L007_R1 unaligned CPTAC3 c485cbc7-847c-4fe1-b022-635a0be0e375 f6440855e4b0c37b81a47dcf462bbeb8 {"aliquot_tag": "ALQ_87bf4770", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01021.miRNA-Seq.T.hg38 C3N-01021 LUAD miRNA-Seq tumor CPT0104970006 23581f03-f7b1-4aab-bcf3-2094ad31aede_mirnaseq_gdc_realn.bam 210283639 BAM harmonized CPTAC3 ddc23276-a5b4-49a3-b8d9-7fcc21d1a09f 6649b439b2ec248f58d450e54db1667d {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor"} -C3N-01021.RNA-Seq.chimeric.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.chimeric.gdc_realn.bam 40153541 BAM chimeric harmonized CPTAC3 2e9cf6f2-1d18-4c29-b6db-95805496ed22 e78e09d7a351feff09446b2610ccbb4a {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.RNA-Seq.chimeric.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.chimeric.gdc_realn.bam 36785584 BAM chimeric harmonized CPTAC3 116a4351-abdc-408a-9f7c-87f7595c4b25 af37284da5a8ef2c5e1e559f9c78ca5a {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor"} -C3N-01021.RNA-Seq.genomic.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.genomic.gdc_realn.bam 5406729546 BAM genomic harmonized CPTAC3 4662173f-51fc-44ea-a0dc-108134eb640e 68f790b57e327ef736760dbb726769f7 {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.RNA-Seq.genomic.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.genomic.gdc_realn.bam 9344488438 BAM genomic harmonized CPTAC3 f3c1f810-e214-488c-9ed6-43fd3921663b 742e72c689734b9407a897b7c96901d4 {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor"} -C3N-01021.RNA-Seq.S17_L005_R1.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 2900719030 FASTQ S17_L005_R1 unaligned CPTAC3 25d695db-0aa8-4265-8f02-25b4bdc16f6b 6bb7b2290ddbd519536f6f83e1fcb173 {"aliquot_tag": "ALQ_fe80d83a", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.RNA-Seq.S17_L005_R2.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 2918591188 FASTQ S17_L005_R2 unaligned CPTAC3 074561b0-dcb3-45ab-98e4-ecf1f3886d8d 7133ac0baaea9e7c0683e9e0a8187f4b {"aliquot_tag": "ALQ_fe80d83a", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.RNA-Seq.S20_L005_R1.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4351787179 FASTQ S20_L005_R1 unaligned CPTAC3 fe4bc94d-b681-40dc-bde1-9615746d3f45 28526012b35cb8f626665cda5167e214 {"aliquot_tag": "ALQ_87bf4770", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01021.RNA-Seq.S20_L005_R2.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4814181149 FASTQ S20_L005_R2 unaligned CPTAC3 463940ad-cae2-4be7-bfe7-77782919f58f c28c25b74aa3f0b217c58da530a52514 {"aliquot_tag": "ALQ_87bf4770", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01021.RNA-Seq.transcriptome.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.transcriptome.gdc_realn.bam 6255914878 BAM transcriptome harmonized CPTAC3 bafe657b-c6e5-468f-9090-9cd40bdfe8b8 59a09679fdaaeb0985e5f99a356182ae {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.RNA-Seq.transcriptome.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.transcriptome.gdc_realn.bam 11976339701 BAM transcriptome harmonized CPTAC3 b12a0c1b-12e0-45d7-b03e-f83d577e012c f5fdebfe021f6ffdcdfd070c4906dbb1 {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor"} -C3N-01021.WGS.A C3N-01021 LUAD WGS tissue_normal CPT0105010010 CPT0105010010.WholeGenome.RP-1303.bam 56980708351 BAM aligned CPTAC3 7b797502-1fe6-42fd-8ea0-26f656bdda94 aa265548667f82e57432625a53374141 {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.WGS.A.hg38 C3N-01021 LUAD WGS tissue_normal CPT0105010010 d7d51562-4b03-475f-957a-18bf0fe7ffa5_wgs_gdc_realn.bam 84144213609 BAM harmonized CPTAC3 eecd1619-e464-47da-8c02-25a431640223 5e0cf7759ecc5217956a6fdcd59b8318 {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.WGS.N C3N-01021 LUAD WGS blood_normal CPT0107560002 CPT0107560002.WholeGenome.RP-1303.bam 75987364643 BAM aligned CPTAC3 024db387-74b8-4fbd-88ac-9a3e79bcae2c b4d9ed64d30a9850fc2d50837a6bc3b6 {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01021.WGS.N.hg38 C3N-01021 LUAD WGS blood_normal CPT0107560002 fc900e46-4670-4fd9-ab78-ce18452fcb32_wgs_gdc_realn.bam 114065162253 BAM harmonized CPTAC3 10064d24-13b8-4350-81c2-27d5e1448f2d 358b5d7266a6ceab799658fe9a8da9cb {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01021.WGS.T C3N-01021 LUAD WGS tumor CPT0104970009 CPT0104970009.WholeGenome.RP-1303.bam 60306973320 BAM aligned CPTAC3 4035021a-a695-4b0a-a327-d97f7e010920 e3957a5c2d07d0f14b00853d05dc0785 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor"} -C3N-01021.WGS.T.hg38 C3N-01021 LUAD WGS tumor CPT0104970009 6e8c1ae0-ff66-4df1-834d-ce7788106d40_wgs_gdc_realn.bam 88695661530 BAM harmonized CPTAC3 004c6292-6780-46ca-8897-2b676a0542a5 9d1b5678e29aea1d66cd192aa39c0c97 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor"} -C3N-01021.WXS.A C3N-01021 LUAD WXS tissue_normal CPT0105010010 CPT0105010010.WholeExome.RP-1303.bam 39109020070 BAM aligned CPTAC3 dce669a7-beb4-49f9-ba1a-eae76ae75540 ed2eda70daaac2bc1d9656f4037bb34e {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.WXS.A.hg38 C3N-01021 LUAD WXS tissue_normal CPT0105010010 d7d51562-4b03-475f-957a-18bf0fe7ffa5_wxs_gdc_realn.bam 52040747726 BAM harmonized CPTAC3 7ca007f5-1403-4a23-b90b-211b39ecfdac 359e8dcb04d112a366eb6e8e02b342ab {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01021.WXS.N C3N-01021 LUAD WXS blood_normal CPT0107560002 CPT0107560002.WholeExome.RP-1303.bam 37644710038 BAM aligned CPTAC3 52ea84dc-f032-4e72-aa4d-ad96ccae3652 3560288db059b7dc560a5f989d78bd30 {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01021.WXS.N.hg38 C3N-01021 LUAD WXS blood_normal CPT0107560002 fc900e46-4670-4fd9-ab78-ce18452fcb32_wxs_gdc_realn.bam 50208440021 BAM harmonized CPTAC3 37caa502-9001-4efb-933f-3d6df36c8123 63feb5af3162958539404bbda463f37d {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01021.WXS.T C3N-01021 LUAD WXS tumor CPT0104970009 CPT0104970009.WholeExome.RP-1303.bam 37790182159 BAM aligned CPTAC3 a5b6178d-a358-449d-8893-2f492123fbe3 cbb1f5ff1392fcb38c769624f845eeac {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor"} -C3N-01021.WXS.T.hg38 C3N-01021 LUAD WXS tumor CPT0104970009 6e8c1ae0-ff66-4df1-834d-ce7788106d40_wxs_gdc_realn.bam 50946474273 BAM harmonized CPTAC3 f5a5607b-9237-4ad9-88a2-ef219be0c0e7 a414e6e3aaf622fbc6a6edb36481d7d9 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor"} -C3N-01022.MethArray.Green.A C3N-01022 LUAD Methylation_Array tissue_normal CPT0117820009 203027390120_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fb8e3f75-8660-4888-b7ee-a51d74a1fb18 b96e20151c90ed5529ee8ec4213db4b9 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.MethArray.Green.T C3N-01022 LUAD Methylation_Array tumor CPT0117790009 202234370120_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fe2439f8-866b-4b28-8a22-d11a77469360 4661c9f6ec3512e323d54c855540be04 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor"} -C3N-01022.MethArray.Red.A C3N-01022 LUAD Methylation_Array tissue_normal CPT0117820009 203027390120_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 b8502e14-6cd7-430a-9af9-73181c58c224 dce360ad747c86962d4af7081c9ac281 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.MethArray.Red.T C3N-01022 LUAD Methylation_Array tumor CPT0117790009 202234370120_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 32168740-c64f-4198-ae97-93df02cfd189 2d347095ae92170a18e99e2c59de5d3c {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor"} -C3N-01022.miRNA-Seq.A.hg38 C3N-01022 LUAD miRNA-Seq tissue_normal CPT0117820006 e8ff5787-3260-436e-9b7c-07480286834c_mirnaseq_gdc_realn.bam 270371251 BAM harmonized CPTAC3 9f1dbd34-0c37-4e2f-aee6-b500e3d00bb2 4ead8737a8292166b8a130ca4e262800 {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.miRNA-Seq.S24_L005_R1.A C3N-01022 LUAD miRNA-Seq tissue_normal CPT0117820006 181108_UNC31-K00269_0162_AH255GBBXY_TCGGCA_S24_L005_R1_001.unaln.bam 245742562 BAM S24_L005_R1 unaligned CPTAC3 2c908ffa-616b-43dc-9e00-e62e7e0d6184 7906d0fd53a1cfa8b92fdef017aa3697 {"aliquot_tag": "ALQ_794101a6", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.miRNA-Seq.S2_L004_R1.T C3N-01022 LUAD miRNA-Seq tumor CPT0117790006 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L004_R1_001.unaln.bam 221467585 BAM S2_L004_R1 unaligned CPTAC3 77b4a9d3-77a6-4fbd-b794-4c19a4f94a18 760db0648e4d7cdaec5bbc92a4abaabc {"aliquot_tag": "ALQ_ffc78262", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01022.miRNA-Seq.T.hg38 C3N-01022 LUAD miRNA-Seq tumor CPT0117790006 be28b133-655a-4302-9d95-52fed80de8e9_mirnaseq_gdc_realn.bam 236496218 BAM harmonized CPTAC3 d88576a7-d243-4093-9b8c-4d404e02ac06 a1f807a751951b5569a510c47f65f8f8 {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor"} -C3N-01022.RNA-Seq.chimeric.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.chimeric.gdc_realn.bam 69040602 BAM chimeric harmonized CPTAC3 83fd720f-044c-45d0-b4d8-d1badb298d31 7db523605a3ee91250fc1fd8424ab210 {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.RNA-Seq.chimeric.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.chimeric.gdc_realn.bam 89601635 BAM chimeric harmonized CPTAC3 7b8df212-f8ce-4d15-bf27-20706d6ce01a e9aa3015afe16405c39618b8676cb28b {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor"} -C3N-01022.RNA-Seq.genomic.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.genomic.gdc_realn.bam 7527084440 BAM genomic harmonized CPTAC3 1d34ecf0-a7d2-4b44-a582-8272b6eb1c5d 17c9b4bdaf6d0425467dadba14cc8a78 {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.RNA-Seq.genomic.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.genomic.gdc_realn.bam 8963611760 BAM genomic harmonized CPTAC3 cc62afe4-5e2b-4679-8ac6-938ae64601ea 642fa0dce1cbd40bd47372209ad68a90 {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor"} -C3N-01022.RNA-Seq.S11_L003_R1.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R1_001.fastq.gz 4180201255 FASTQ S11_L003_R1 unaligned CPTAC3 e13d3f16-43bb-41ef-a12f-1d585b7a3a34 001528a5ca099256977ea2c7b1caa967 {"aliquot_tag": "ALQ_ffc78262", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01022.RNA-Seq.S11_L003_R2.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R2_001.fastq.gz 4588964294 FASTQ S11_L003_R2 unaligned CPTAC3 14e4f846-a99b-424d-924e-145b287431cc 5c5a8647a42a2ce052ceb64ce39a491d {"aliquot_tag": "ALQ_ffc78262", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01022.RNA-Seq.S37_L007_R1.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R1_001.fastq.gz 3663636749 FASTQ S37_L007_R1 unaligned CPTAC3 ec1d657b-3f62-4542-a797-f0cf12ef9205 cbdf2b9d5cd7bbe28ebe358ab839c94d {"aliquot_tag": "ALQ_794101a6", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.RNA-Seq.S37_L007_R2.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R2_001.fastq.gz 3918725289 FASTQ S37_L007_R2 unaligned CPTAC3 6139aeb3-a7f2-4dac-9eef-9d74414d59c7 2d11cd684e6f75c6e1ae6d24a8c5cd3b {"aliquot_tag": "ALQ_794101a6", "sample": "S37", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.RNA-Seq.transcriptome.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.transcriptome.gdc_realn.bam 9444279913 BAM transcriptome harmonized CPTAC3 d8322313-8585-4345-954b-0f8bd83bcfc6 4641223cdd2e37071f1b174ec044fe5f {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.RNA-Seq.transcriptome.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.transcriptome.gdc_realn.bam 12136147588 BAM transcriptome harmonized CPTAC3 3f0c906f-17e4-486b-8b83-fa6827f4246d d7b77526333a7dd332186cdf292a0234 {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor"} -C3N-01022.WGS.A C3N-01022 LUAD WGS tissue_normal CPT0117820009 CPT0117820009.WholeGenome.RP-1303.bam 58524086782 BAM aligned CPTAC3 d18ce70e-c593-4b67-91b5-d2fd6ac678bb 68fc8bc0637368d5b76bdb9b55867222 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.WGS.A.hg38 C3N-01022 LUAD WGS tissue_normal CPT0117820009 9cbde4df-30cf-4aef-97ef-0190d2560088_wgs_gdc_realn.bam 85583028500 BAM harmonized CPTAC3 515e2de9-8103-46f3-bedc-2311709c7ee5 6588565517e2a43231f691486be7b8d6 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.WGS.N C3N-01022 LUAD WGS blood_normal CPT0119030002 CPT0119030002.WholeGenome.RP-1303.bam 64864110739 BAM aligned CPTAC3 00b529e5-e9a7-47d9-90d3-c1041bb2c29a c42b5ae5a67a429068a849ac5d3ffc1d {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01022.WGS.N.hg38 C3N-01022 LUAD WGS blood_normal CPT0119030002 847f97f0-8f4d-4eec-863c-fc85b03fb427_wgs_gdc_realn.bam 96438850452 BAM harmonized CPTAC3 cf4f0ad2-8535-4f67-92c7-dfb038fa0560 06b3eaa10180b0217bce058e6dc455b3 {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01022.WGS.T C3N-01022 LUAD WGS tumor CPT0117790009 CPT0117790009.WholeGenome.RP-1303.bam 59818417054 BAM aligned CPTAC3 d65d165d-113c-4ba7-a628-fbc5d71c80b3 3fd17a437e4d2df1bfab33e055c09974 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor"} -C3N-01022.WGS.T.hg38 C3N-01022 LUAD WGS tumor CPT0117790009 b7e86b11-9879-4353-b6de-b87af018efdd_wgs_gdc_realn.bam 87486119049 BAM harmonized CPTAC3 e2b39956-e966-4b86-bb1a-c29df2d031c5 9930b33649ce050a59c3d714c8dd40b9 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor"} -C3N-01022.WXS.A C3N-01022 LUAD WXS tissue_normal CPT0117820009 CPT0117820009.WholeExome.RP-1303.bam 40284704610 BAM aligned CPTAC3 5e158896-d22f-49a8-83d9-438e780c8f17 1a8823466a9bae2f67ed6ef7f8fb342b {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.WXS.A.hg38 C3N-01022 LUAD WXS tissue_normal CPT0117820009 9cbde4df-30cf-4aef-97ef-0190d2560088_wxs_gdc_realn.bam 55456331759 BAM harmonized CPTAC3 9edbb702-e019-46ed-a5d9-3d6d47111ca3 d5f5f3c5609096a7db3c5146186061d8 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01022.WXS.N C3N-01022 LUAD WXS blood_normal CPT0119030002 CPT0119030002.WholeExome.RP-1303.bam 41436413161 BAM aligned CPTAC3 40cab493-888a-4f83-95a8-34f098655625 558544aa9418f404084492001f5a6c0c {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01022.WXS.N.hg38 C3N-01022 LUAD WXS blood_normal CPT0119030002 847f97f0-8f4d-4eec-863c-fc85b03fb427_wxs_gdc_realn.bam 56118013262 BAM harmonized CPTAC3 1fee2414-de0c-498e-9565-1b57bae644a9 c9b14fe11a8d9ee3434ba57ebb576fc6 {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01022.WXS.T C3N-01022 LUAD WXS tumor CPT0117790009 CPT0117790009.WholeExome.RP-1303.bam 35932136163 BAM aligned CPTAC3 d577e1a5-072f-4a67-8a65-7c75dbc08198 af461e7be5a10da00df66aba432d3df0 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor"} -C3N-01022.WXS.T.hg38 C3N-01022 LUAD WXS tumor CPT0117790009 b7e86b11-9879-4353-b6de-b87af018efdd_wxs_gdc_realn.bam 48201307227 BAM harmonized CPTAC3 9cf0d0e0-3c0a-4394-8c7f-a5bfd8b535a1 b235d10ee781e925b9458c7c85d3c971 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor"} -C3N-01023.MethArray.Green.A C3N-01023 LUAD Methylation_Array tissue_normal CPT0105190009 203027390028_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a32c1b6b-ff59-49de-9724-e97ec79a251e 1106a995ded94be74c917f9c766dbe11 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.MethArray.Green.T C3N-01023 LUAD Methylation_Array tumor CPT0105060009 202234380102_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4100fac4-b9ab-4e43-a0c1-93cbde1b0964 af610c8aa1ed842a6e0cbf19bc0b3f01 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor"} -C3N-01023.MethArray.Red.A C3N-01023 LUAD Methylation_Array tissue_normal CPT0105190009 203027390028_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 d8cac26b-9ae5-4b5a-a399-f57c07df0df0 df52af3f12038cb3c674bf9582697236 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.MethArray.Red.T C3N-01023 LUAD Methylation_Array tumor CPT0105060009 202234380102_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 87292705-ce13-48cd-83ca-6160d0e4f0a0 01a1daa8bc67db1836025b513626b32a {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor"} -C3N-01023.miRNA-Seq.A.hg38 C3N-01023 LUAD miRNA-Seq tissue_normal CPT0105190006 d6e1a802-9d2b-4b3c-8f1f-942e74ae0c96_mirnaseq_gdc_realn.bam 240085878 BAM harmonized CPTAC3 e49cac6b-d9b3-4895-826d-c6a9318ebf1d 569254628fe084ac2e903b214588dc17 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.miRNA-Seq.S23_L005_R1.T C3N-01023 LUAD miRNA-Seq tumor CPT0105060006 181119_UNC31-K00269_0165_AH27WCBBXY_TCGAAG_S23_L005_R1_001.unaln.bam 197547821 BAM S23_L005_R1 unaligned CPTAC3 68013eed-bcd2-4e0b-8142-212eb113caa0 a4f9fb6ddbd4e42bab9354532cc6f620 {"aliquot_tag": "ALQ_3ba734bc", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01023.miRNA-Seq.S38_L008_R1.A C3N-01023 LUAD miRNA-Seq tissue_normal CPT0105190006 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L008_R1_001.unaln.bam 218716852 BAM S38_L008_R1 unaligned CPTAC3 8b3f6917-546b-43f1-83b4-90735f096d31 d34a05c72da03737e132d106e0914843 {"aliquot_tag": "ALQ_72ab70c8", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.miRNA-Seq.T.hg38 C3N-01023 LUAD miRNA-Seq tumor CPT0105060006 f8e84d81-7190-47c0-8639-bbf625e221a4_mirnaseq_gdc_realn.bam 213067762 BAM harmonized CPTAC3 11b0bb6e-72a8-40ce-9ef2-981d4543bb21 983f771de558d455654d16574af9a5cc {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor"} -C3N-01023.RNA-Seq.chimeric.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.chimeric.gdc_realn.bam 97444264 BAM chimeric harmonized CPTAC3 74c13c4d-c056-4761-95cf-913913733dcb 796c39ba3c63ceec57d2218261bc0b43 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.RNA-Seq.chimeric.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.chimeric.gdc_realn.bam 35942145 BAM chimeric harmonized CPTAC3 cc6522ed-139d-4225-83b0-b2f4e53001f7 f78df2efaa0fd2805b6506ed898bfbf6 {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor"} -C3N-01023.RNA-Seq.genomic.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.genomic.gdc_realn.bam 8989705099 BAM genomic harmonized CPTAC3 400822a1-746e-48e3-875f-c1d022c429bb 92b9bc364eedd829373345c341a400c4 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.RNA-Seq.genomic.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.genomic.gdc_realn.bam 8970092447 BAM genomic harmonized CPTAC3 efe9fea9-bffa-463b-9bcb-e1379ec8121a 8fa5d00cb3a0f8dbc93a9d3cec44978f {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor"} -C3N-01023.RNA-Seq.S10_L008_R1.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R1_001.fastq.gz 4245927775 FASTQ S10_L008_R1 unaligned CPTAC3 68280a88-e5ab-4692-be16-13a8b89ab24c e706ff61d24552c3d8a782be6f790abe {"aliquot_tag": "ALQ_72ab70c8", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.RNA-Seq.S10_L008_R2.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R2_001.fastq.gz 4678324312 FASTQ S10_L008_R2 unaligned CPTAC3 18ae465e-5ade-4c9e-9d5e-fe5dbd18deb8 cf130249fd13be5b0fc6c3f343215b04 {"aliquot_tag": "ALQ_72ab70c8", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.RNA-Seq.S15_L004_R1.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3885047829 FASTQ S15_L004_R1 unaligned CPTAC3 58f7c30a-a7cd-44e3-91c6-db892b584c1c 69236b0415391dcc35bf6fb9a21cba74 {"aliquot_tag": "ALQ_3ba734bc", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01023.RNA-Seq.S15_L004_R2.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4223428891 FASTQ S15_L004_R2 unaligned CPTAC3 78cdbc02-99e3-4a5e-a7a7-3032a32662e7 98f6ccb53be8c4bd08c324903d8e26f5 {"aliquot_tag": "ALQ_3ba734bc", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01023.RNA-Seq.transcriptome.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.transcriptome.gdc_realn.bam 9899557127 BAM transcriptome harmonized CPTAC3 beaa4859-510e-4166-b778-7e1d3c00aaa4 79bb9afc44c97d240971701d851de270 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.RNA-Seq.transcriptome.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.transcriptome.gdc_realn.bam 10786475447 BAM transcriptome harmonized CPTAC3 34ad78e8-31dd-4d12-8e34-93e83661ac46 be89d0cbd81f564f87dc31bd1ca92a7c {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor"} -C3N-01023.WGS.A C3N-01023 LUAD WGS tissue_normal CPT0105190009 CPT0105190009.WholeGenome.RP-1303.bam 49144994370 BAM aligned CPTAC3 371a3deb-04e1-4dcd-ae9c-c529bc81e396 db7d017bcf2e65e4369f61d900acdd7c {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.WGS.A.hg38 C3N-01023 LUAD WGS tissue_normal CPT0105190009 f52bd70a-0ab5-40d5-8c52-471fe67007c4_wgs_gdc_realn.bam 72395036500 BAM harmonized CPTAC3 ba91bf48-47f3-465d-9f69-b9660e35149d 3efbde6347d76b382ff60cefd803a39f {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.WGS.N C3N-01023 LUAD WGS blood_normal CPT0107620002 CPT0107620002.WholeGenome.RP-1303.bam 77130565560 BAM aligned CPTAC3 0ae07815-7c45-4931-9811-644078e3ccea 6adef516521c8a4b55663753d0b09fdf {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal"} -C3N-01023.WGS.N.hg38 C3N-01023 LUAD WGS blood_normal CPT0107620002 6fe094ac-6df4-4439-8fe5-b4478e811ba2_wgs_gdc_realn.bam 114609434920 BAM harmonized CPTAC3 ea1cc5e5-bf38-4299-b85c-af8c57c4dc76 cd2cca9c08e37039d16e96ae80c5b888 {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal"} -C3N-01023.WGS.T C3N-01023 LUAD WGS tumor CPT0105060009 CPT0105060009.WholeGenome.RP-1303.bam 56203790204 BAM aligned CPTAC3 79a6054b-4f0a-4417-90b9-1c3cc72fa829 3758d63fbe5162dbd0aeeb8345276893 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor"} -C3N-01023.WGS.T.hg38 C3N-01023 LUAD WGS tumor CPT0105060009 f1cb7bcc-d5c8-49fa-a282-7a3d77692341_wgs_gdc_realn.bam 82757871457 BAM harmonized CPTAC3 a28de540-c211-488a-9189-010055881d30 97f892815432d8d1a676c1d1cac108d9 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor"} -C3N-01023.WXS.A C3N-01023 LUAD WXS tissue_normal CPT0105190009 CPT0105190009.WholeExome.RP-1303.bam 30131499995 BAM aligned CPTAC3 a2aa72c4-7302-4204-a218-82019bdb9767 ae6bb0633a2d469fe2ea515624967561 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.WXS.A.hg38 C3N-01023 LUAD WXS tissue_normal CPT0105190009 f52bd70a-0ab5-40d5-8c52-471fe67007c4_wxs_gdc_realn.bam 40736560873 BAM harmonized CPTAC3 8411bed9-2b4d-422c-8484-ac5b37d75445 96ef0e1c01e8e4d5c0805dd000ba1274 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01023.WXS.N C3N-01023 LUAD WXS blood_normal CPT0107620002 CPT0107620002.WholeExome.RP-1303.bam 25575784912 BAM aligned CPTAC3 92654762-5f60-47de-a4d6-a151badf2a08 b4fc525a12b263c8fde80871fbe3957e {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal"} -C3N-01023.WXS.N.hg38 C3N-01023 LUAD WXS blood_normal CPT0107620002 6fe094ac-6df4-4439-8fe5-b4478e811ba2_wxs_gdc_realn.bam 34660210979 BAM harmonized CPTAC3 ea279111-7dee-4109-9eef-1dc0c7c48bc8 28d9de81b670c04070a6de131fe8bc6d {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal"} -C3N-01023.WXS.T C3N-01023 LUAD WXS tumor CPT0105060009 CPT0105060009.WholeExome.RP-1303.bam 34053367287 BAM aligned CPTAC3 4306a613-33b7-4e18-a475-222172c6847f 590aff2c86d9f16769fbb41354abd48a {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor"} -C3N-01023.WXS.T.hg38 C3N-01023 LUAD WXS tumor CPT0105060009 f1cb7bcc-d5c8-49fa-a282-7a3d77692341_wxs_gdc_realn.bam 45839232980 BAM harmonized CPTAC3 11ccfeaf-bedc-4a9b-876a-29708e14f98e b3acc8f65ff9c778ed69b08680820679 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor"} -C3N-01024.MethArray.Green.A C3N-01024 LUAD Methylation_Array tissue_normal CPT0105250009 203027380028_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 6a50c22c-f2fd-46d6-8ec2-ea577f195671 10da2cebf95208ab38730c240485be32 {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.MethArray.Green.T C3N-01024 LUAD Methylation_Array tumor CPT0105230009 202234360028_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4eb2b479-09a1-4aeb-b55d-f6e1dd9feaa1 fec540f660b6dd6d2db3cf4473a6cb45 {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor"} -C3N-01024.MethArray.Red.A C3N-01024 LUAD Methylation_Array tissue_normal CPT0105250009 203027380028_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 10154ff7-9da6-4c57-8435-0665dd9f6bd9 9d8ac5c7be77dce044a2fde868f826ee {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.MethArray.Red.T C3N-01024 LUAD Methylation_Array tumor CPT0105230009 202234360028_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 49c7e9f4-2d4c-443f-a7dd-b00d297adb2d 796b7d4ba06bc0445bc97a4c44280e0b {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor"} -C3N-01024.miRNA-Seq.A.hg38 C3N-01024 LUAD miRNA-Seq tissue_normal CPT0105250006 697505be-89e5-4c4a-927a-a4990da47fef_mirnaseq_gdc_realn.bam 255717661 BAM harmonized CPTAC3 1ef18824-9cf6-4c44-b41f-3914f7174343 a8ae7076e4a4ffa749af1ee2d2638927 {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.miRNA-Seq.S11_L007_R1.A C3N-01024 LUAD miRNA-Seq tissue_normal CPT0105250006 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L007_R1_001.unaln.bam 233666891 BAM S11_L007_R1 unaligned CPTAC3 88413f59-2f60-4d4a-80e9-a9b27285ff75 19b9d136df9f4c02a92adce751aa3b94 {"aliquot_tag": "ALQ_31cfef67", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.miRNA-Seq.S42_L007_R1.T C3N-01024 LUAD miRNA-Seq tumor CPT0105230006 181108_UNC31-K00269_0163_BH23TVBBXY_TAATCG_S42_L007_R1_001.unaln.bam 180552171 BAM S42_L007_R1 unaligned CPTAC3 2a551037-c6e8-4b98-a021-f69ce98a5f47 193f06b015de8f0d9e98e217e7555761 {"aliquot_tag": "ALQ_be8f1ac7", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01024.miRNA-Seq.T.hg38 C3N-01024 LUAD miRNA-Seq tumor CPT0105230006 88e30154-0d0d-4080-9490-bbbb28e30c77_mirnaseq_gdc_realn.bam 200927484 BAM harmonized CPTAC3 031eb5f2-52d4-4e86-920f-a56019783f41 98679bb4dc71f81055ead6da99bff339 {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor"} -C3N-01024.RNA-Seq.chimeric.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.chimeric.gdc_realn.bam 105230183 BAM chimeric harmonized CPTAC3 0c6a174e-d227-4bf3-8dc5-dcc5373e7a46 65f39eeb56cbd64a9e5c0ba143221bfe {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.RNA-Seq.chimeric.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.chimeric.gdc_realn.bam 29686870 BAM chimeric harmonized CPTAC3 b3b3fc80-bd1c-44fa-9e45-221c7f3cf933 63eb3f7c98444771d68ae22de4d8d603 {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor"} -C3N-01024.RNA-Seq.genomic.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.genomic.gdc_realn.bam 8852890117 BAM genomic harmonized CPTAC3 7bfd253a-7db8-4122-ad31-eda5eabe7e10 6867be8601306d0fba3a7e868526db90 {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.RNA-Seq.genomic.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.genomic.gdc_realn.bam 7103899485 BAM genomic harmonized CPTAC3 285129a7-0907-4bad-88a5-660903dea37e 69c43dfcfb13d0062a064e5235c401fd {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor"} -C3N-01024.RNA-Seq.S23_L006_R1.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R1_001.fastq.gz 3212271695 FASTQ S23_L006_R1 unaligned CPTAC3 565bbf90-d360-4748-93bf-0a41eb61a124 e7bfaa49815f2d47536c33a63dd74c2e {"aliquot_tag": "ALQ_be8f1ac7", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01024.RNA-Seq.S23_L006_R2.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R2_001.fastq.gz 3560629296 FASTQ S23_L006_R2 unaligned CPTAC3 608825d7-23ea-412a-a3ea-00a6372965ea 0c205a67311d2b51c576a8e17737b3a2 {"aliquot_tag": "ALQ_be8f1ac7", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01024.RNA-Seq.S9_L003_R1.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 4130779187 FASTQ S9_L003_R1 unaligned CPTAC3 d3fd7b33-e340-4f70-a6df-b7be7251f916 bd9a5893f2f379856d72af0bf51b06bb {"aliquot_tag": "ALQ_31cfef67", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.RNA-Seq.S9_L003_R2.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 4809377296 FASTQ S9_L003_R2 unaligned CPTAC3 d39ad31f-6a7e-41b0-96c5-93194af85f8a 737830aa5bb9c1aca719aeb5a4c21c8b {"aliquot_tag": "ALQ_31cfef67", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.RNA-Seq.transcriptome.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.transcriptome.gdc_realn.bam 10387747052 BAM transcriptome harmonized CPTAC3 20c64422-ffcc-462e-a03b-7caeb3503ce9 7a18ced81f20099200d7087fc0c00ce0 {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.RNA-Seq.transcriptome.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.transcriptome.gdc_realn.bam 10425646942 BAM transcriptome harmonized CPTAC3 dae77f1f-ce71-4b3f-9cda-479beaff9e2f c05d4670f042e77f09245fbfae6346db {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor"} -C3N-01024.WGS.A C3N-01024 LUAD WGS tissue_normal CPT0105250009 CPT0105250009.WholeGenome.RP-1303.bam 75004313727 BAM aligned CPTAC3 ca822649-3568-4809-8176-bc9d9e14c89b a595854ab5437a4e18eed3a0d187ea17 {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.WGS.A.hg38 C3N-01024 LUAD WGS tissue_normal CPT0105250009 b5e049c4-a147-488f-8545-70c5ade90d94_wgs_gdc_realn.bam 109407714464 BAM harmonized CPTAC3 feb04b17-09ba-4698-9198-047c3d2a6831 5c6bd55e32f4f2095575698f258bcbea {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.WGS.N C3N-01024 LUAD WGS blood_normal CPT0107680002 CPT0107680002.WholeGenome.RP-1303.bam 60749597812 BAM aligned CPTAC3 59b824c6-f52e-4bef-ae1e-7b2aa2e02773 ba96503e9126109bdfcb520299433ac6 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01024.WGS.N.hg38 C3N-01024 LUAD WGS blood_normal CPT0107680002 56936176-1fa4-4fab-8558-c250f52613e2_wgs_gdc_realn.bam 90661453856 BAM harmonized CPTAC3 96403b4d-7d4d-4740-9cf9-2c544882f6a5 b8a7148209217c974c69bbef9e4220b4 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01024.WGS.T C3N-01024 LUAD WGS tumor CPT0105230009 CPT0105230009.WholeGenome.RP-1303.bam 71417335975 BAM aligned CPTAC3 c607cf03-179c-4d3b-b6fa-b5339e5ff377 bea00a2f378600257e55baa71092eb3e {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor"} -C3N-01024.WGS.T.hg38 C3N-01024 LUAD WGS tumor CPT0105230009 b054d196-6194-469f-aa49-62037b18d803_wgs_gdc_realn.bam 105547429040 BAM harmonized CPTAC3 75c882b4-a172-4412-aa44-26df17479645 7763be4aef8003be0bdbbe3d9c03c557 {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor"} -C3N-01024.WXS.A C3N-01024 LUAD WXS tissue_normal CPT0105250009 CPT0105250009.WholeExome.RP-1303.bam 26628368083 BAM aligned CPTAC3 3212e587-1b50-426d-a7dc-39a075116f07 027be7201381333a51826b63975e4b71 {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.WXS.A.hg38 C3N-01024 LUAD WXS tissue_normal CPT0105250009 b5e049c4-a147-488f-8545-70c5ade90d94_wxs_gdc_realn.bam 36362860228 BAM harmonized CPTAC3 763dce08-6661-42b5-baf6-4ba4e87a6f44 5104f002bdef8938933c74608c75b6ae {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01024.WXS.N C3N-01024 LUAD WXS blood_normal CPT0107680002 CPT0107680002.WholeExome.RP-1303.bam 31218214289 BAM aligned CPTAC3 a5e7183c-4d75-455f-bfeb-8c5209a9e1eb 8fc17fee6d98b19f03b1aa045796e817 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01024.WXS.N.hg38 C3N-01024 LUAD WXS blood_normal CPT0107680002 56936176-1fa4-4fab-8558-c250f52613e2_wxs_gdc_realn.bam 40956944679 BAM harmonized CPTAC3 04a3af93-4f72-430b-9c69-6b67fd8ccd24 965362761668207a4ff509a59cbb9868 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01024.WXS.T C3N-01024 LUAD WXS tumor CPT0105230009 CPT0105230009.WholeExome.RP-1303.bam 39455899446 BAM aligned CPTAC3 5f26bb97-142d-4686-afaa-f3747977ec0e 9c698c0fba7a29b0629349a47c7d305f {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor"} -C3N-01024.WXS.T.hg38 C3N-01024 LUAD WXS tumor CPT0105230009 b054d196-6194-469f-aa49-62037b18d803_wxs_gdc_realn.bam 53574144778 BAM harmonized CPTAC3 917300e1-0d7e-4d09-80a5-65672f9f2abd 4cc7f63bd5e793823b8807a67a9c6fbc {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor"} -C3N-01025.MethArray.Green.A C3N-01025 LSCC Methylation_Array tissue_normal CPT0083990006 203219640133_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 108e8ab3-fed2-4838-9d66-70c39001eac6 e81effe7e474b3a1a1d0c6815ad72440 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.MethArray.Green.T C3N-01025 LSCC Methylation_Array tumor CPT0083980006 202184900105_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 701898ce-f5cf-4fc0-b4fc-0deaea04e3e5 7b3c8a54232e380c1a03da46e690e851 {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor"} -C3N-01025.MethArray.Red.A C3N-01025 LSCC Methylation_Array tissue_normal CPT0083990006 203219640133_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 2cb5f0b1-7fac-47de-9eab-7058cc3fa4c1 41fbe73d460b7c78deedcf23ca827ad5 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.MethArray.Red.T C3N-01025 LSCC Methylation_Array tumor CPT0083980006 202184900105_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 1a76a9e7-6e13-43d9-a0a4-6f06755fe307 333dfdcc2d1bf2dd13203239cb88bb22 {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor"} -C3N-01025.miRNA-Seq.A.hg38 C3N-01025 LSCC miRNA-Seq tissue_normal CPT0083990009 cd506a81-3738-4da6-968b-8630fe5f1279_mirnaseq_gdc_realn.bam 212948639 BAM harmonized CPTAC3 6249dab8-043a-4e1e-b50c-91b7b026745e e51e35181ee2bcd060944e5dce800014 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.miRNA-Seq.S2_L005_R1.A C3N-01025 LSCC miRNA-Seq tissue_normal CPT0083990009 181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L005_R1_001.unaln.bam 191375612 BAM S2_L005_R1 unaligned CPTAC3 3b62aadb-d041-4e05-aa9c-9cc74e742411 3190a1a19d07a5f40e22254beb141f2c {"aliquot_tag": "ALQ_a909d5f8", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.miRNA-Seq.S7_L006_R1.T C3N-01025 LSCC miRNA-Seq tumor CPT0083980009 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L006_R1_001.unaln.bam 176643437 BAM S7_L006_R1 unaligned CPTAC3 5baa3e69-1721-4ab6-8b70-8e2c30c7aa52 898c3916098cae64e9ffb668da153efc {"aliquot_tag": "ALQ_9469fc48", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01025.miRNA-Seq.T.hg38 C3N-01025 LSCC miRNA-Seq tumor CPT0083980009 2f551df5-c3a7-4879-afa2-b8c8af9629fa_mirnaseq_gdc_realn.bam 210033614 BAM harmonized CPTAC3 a7a8b5ce-ffaf-45d3-ae6f-3dbc6fdd69a9 4281001206bac01e7be79a111f74c07d {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor"} -C3N-01025.RNA-Seq.chimeric.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.chimeric.gdc_realn.bam 42116847 BAM chimeric harmonized CPTAC3 37f1a33f-f78a-4335-9208-3520510136e9 0200418308a6de8801d26d1f9dfcd242 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.RNA-Seq.chimeric.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.chimeric.gdc_realn.bam 65333724 BAM chimeric harmonized CPTAC3 cdb9cf90-7633-4b59-9c6e-4aeb938b3237 6885c9ba643bb1a050a6782ff6863df0 {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor"} -C3N-01025.RNA-Seq.genomic.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.genomic.gdc_realn.bam 10596154368 BAM genomic harmonized CPTAC3 a6d2f656-0c01-43ea-98d2-1f529fe39c3e 80593f31acac505c6e9aa66fa87cf977 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.RNA-Seq.genomic.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.genomic.gdc_realn.bam 11404033090 BAM genomic harmonized CPTAC3 6156be8c-fd6c-42d2-a1e7-b68e1b23d18f 118a5456f0c6914e0aabc304c600f04b {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor"} -C3N-01025.RNA-Seq.S2_L001_R1.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4760584148 FASTQ S2_L001_R1 unaligned CPTAC3 0396eebf-431f-4be8-b767-d8715f81ac22 7102ab7bc12345060b9b4edf03ed8124 {"aliquot_tag": "ALQ_a909d5f8", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.RNA-Seq.S2_L001_R2.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R2_001.fastq.gz 5159080379 FASTQ S2_L001_R2 unaligned CPTAC3 52a5f78a-ac2f-4387-9076-f596f043c6a0 b9490fb90fd88c2325bcb2fbe651cbe1 {"aliquot_tag": "ALQ_a909d5f8", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.RNA-Seq.S2_L007_R1.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4858337206 FASTQ S2_L007_R1 unaligned CPTAC3 ee7ae4a3-09d2-41a2-8555-0415eadd7af2 b15774f57495a05d4bd2229533512792 {"aliquot_tag": "ALQ_9469fc48", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01025.RNA-Seq.S2_L007_R2.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5289739765 FASTQ S2_L007_R2 unaligned CPTAC3 fd4cf698-cdd1-4357-a78f-2f8d0136009f eb31721e329ea1bf82a4ac017c143f45 {"aliquot_tag": "ALQ_9469fc48", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01025.RNA-Seq.transcriptome.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.transcriptome.gdc_realn.bam 12738618653 BAM transcriptome harmonized CPTAC3 b2deb791-9a5a-47bc-9858-5ae717a0ca74 48563d27a2b03d1f47fb19428e7a8095 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.RNA-Seq.transcriptome.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.transcriptome.gdc_realn.bam 12721550872 BAM transcriptome harmonized CPTAC3 3c9f0693-5be1-4b06-8bbb-cbe832f11a94 f769c907f99c3a2e0608447366b0d264 {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor"} -C3N-01025.WGS.A C3N-01025 LSCC WGS tissue_normal CPT0083990006 CPT0083990006.WholeGenome.RP-1303.bam 58363367476 BAM aligned CPTAC3 ee83c0dd-5f93-443b-a234-b17d3835740c 4f2416b0a848a28021dfe18cd65e6054 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.WGS.A.hg38 C3N-01025 LSCC WGS tissue_normal CPT0083990006 8fec352a-9f29-4192-9cf7-4e168121d65a_wgs_gdc_realn.bam 85351032567 BAM harmonized CPTAC3 e852138c-e1c8-423e-8908-3ab8029a7dd4 90478ea28c706311d81ed3370cd990e4 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.WGS.N C3N-01025 LSCC WGS blood_normal CPT0084010002 CPT0084010002.WholeGenome.RP-1303.bam 71056926666 BAM aligned CPTAC3 77d587f5-556c-4c33-9171-f3cd9398f7d0 448bfa966e936231592a883891a09c0b {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01025.WGS.N.hg38 C3N-01025 LSCC WGS blood_normal CPT0084010002 deaf3afa-6124-4a78-963e-99548e4a01e7_gdc_realn.bam 106684041857 BAM harmonized CPTAC3 2aa47188-a36b-436f-9fa8-38fa65d43168 f35a65b938dc2d58e3d6f501562e759c {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01025.WGS.T C3N-01025 LSCC WGS tumor CPT0083980006 CPT0083980006.WholeGenome.RP-1303.bam 63804076143 BAM aligned CPTAC3 711a495a-5a1c-4810-b862-b135dff6f3a0 d8591da596783c725531059dad77bed9 {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor"} -C3N-01025.WGS.T.hg38 C3N-01025 LSCC WGS tumor CPT0083980006 ec4f4827-a41c-44ff-b5d8-dfaa16db54a3_gdc_realn.bam 97633619562 BAM harmonized CPTAC3 235fdf79-7fc1-4173-82dc-406ef59a9f31 cf345eca418640d21098f332be6bb73e {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor"} -C3N-01025.WXS.A C3N-01025 LSCC WXS tissue_normal CPT0083990006 CPT0083990006.WholeExome.RP-1303.bam 25842968018 BAM aligned CPTAC3 b6c375f0-0e7c-43ca-984d-fb6983d5ba8f 4aba9511ca7b4142457d8de8ad2e80c8 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.WXS.A.hg38 C3N-01025 LSCC WXS tissue_normal CPT0083990006 8fec352a-9f29-4192-9cf7-4e168121d65a_wxs_gdc_realn.bam 35272404645 BAM harmonized CPTAC3 7dff52b7-6d06-4c47-bb09-551496226f51 9cbb3ab55a2c00c313d823642c4ca123 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01025.WXS.N C3N-01025 LSCC WXS blood_normal CPT0084010002 CPT0084010002.WholeExome.RP-1303.bam 27659768215 BAM aligned CPTAC3 39c24a02-32ed-4879-b1cc-d280eeeb616e c39c3133fe829a21191042f36464b6a2 {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01025.WXS.N.hg38 C3N-01025 LSCC WXS blood_normal CPT0084010002 deaf3afa-6124-4a78-963e-99548e4a01e7_gdc_realn.bam 37319544478 BAM harmonized CPTAC3 70c998a7-7458-4e01-b2f9-d6f11ff36c7c 6e605da78c8257b6097fa71c256d04f4 {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01025.WXS.T C3N-01025 LSCC WXS tumor CPT0083980006 CPT0083980006.WholeExome.RP-1303.bam 31199790143 BAM aligned CPTAC3 6f944b50-8588-46ae-8562-6da85943cd0a 210fbf69fb6fb9c11e393e9d3c36b93e {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor"} -C3N-01025.WXS.T.hg38 C3N-01025 LSCC WXS tumor CPT0083980006 ec4f4827-a41c-44ff-b5d8-dfaa16db54a3_gdc_realn.bam 43244656893 BAM harmonized CPTAC3 b90e9e68-b77d-4b34-b30b-67f097fd6fca 07ef4fd5c4b3b16929346b9f3b61df8b {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor"} -C3N-01028.MethArray.Green.A C3N-01028 LSCC Methylation_Array tissue_normal CPT0091090006 203219670147_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 8f6ad34c-17e3-47b2-ac87-7f4acedbff3e 1a25c9f487ffdce79689713315ee582b {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.MethArray.Green.T C3N-01028 LSCC Methylation_Array tumor CPT0091050009 202234370093_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b2e1cd09-a389-4d2e-8345-38117c14c1d4 2c42c8228a49a92cbbaead2ac9667a7e {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor"} -C3N-01028.MethArray.Red.A C3N-01028 LSCC Methylation_Array tissue_normal CPT0091090006 203219670147_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 92483232-4bdd-4837-9377-c82c6d901128 b7a95374bb08780bd38c12ac35d6a309 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.MethArray.Red.T C3N-01028 LSCC Methylation_Array tumor CPT0091050009 202234370093_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 0f24c0fd-9c09-4d0b-b600-13ce9b5270fb 1dbe6b160a264d5fffec0be077c36956 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor"} -C3N-01028.miRNA-Seq.A.hg38 C3N-01028 LSCC miRNA-Seq tissue_normal CPT0091090009 e79b4a6e-1604-4756-bfd7-84ad84ac65c4_mirnaseq_gdc_realn.bam 293520161 BAM harmonized CPTAC3 d94a7955-d8a6-40df-b2a1-290d09cafae9 400108aa890eba2ef69ede3e3bf8b5d1 {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.miRNA-Seq.S20_L006_R1.T C3N-01028 LSCC miRNA-Seq tumor CPT0091050006 180828_UNC32-K00270_0112_AHWTLNBBXX_TGACCA_S20_L006_R1_001.unaln.bam 230518542 BAM S20_L006_R1 unaligned CPTAC3 ad65ea8c-b5df-4a40-ad8c-726f609a6d60 042b46ec85361cfe60424c6bc00935a6 {"aliquot_tag": "ALQ_807c6517", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01028.miRNA-Seq.S3_L005_R1.A C3N-01028 LSCC miRNA-Seq tissue_normal CPT0091090009 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L005_R1_001.unaln.bam 264014990 BAM S3_L005_R1 unaligned CPTAC3 ab67918c-eb98-4d15-ae3a-d0113cd720fd 7c8d91295743a146f199083f463aafc7 {"aliquot_tag": "ALQ_d5339587", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.miRNA-Seq.T.hg38 C3N-01028 LSCC miRNA-Seq tumor CPT0091050006 1c39917c-8cc6-4028-a5b2-d182f30a3ca4_mirnaseq_gdc_realn.bam 259252872 BAM harmonized CPTAC3 dad8b3ff-1a81-4726-83cf-7fa1942eefad 5176b088f9bf37cfa534d7bda702c9d1 {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor"} -C3N-01028.RNA-Seq.chimeric.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.chimeric.gdc_realn.bam 40889093 BAM chimeric harmonized CPTAC3 e55fb1aa-d383-4e23-86fb-03aadec65fca 1af348d2c6bbfa5184ca9eafa220570f {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.RNA-Seq.chimeric.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.chimeric.gdc_realn.bam 29698113 BAM chimeric harmonized CPTAC3 21d7c722-e7d5-4daa-9b4c-ef8537afb40c 679020d8e78463f12a34c1c487d1da9a {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor"} -C3N-01028.RNA-Seq.genomic.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.genomic.gdc_realn.bam 9237356884 BAM genomic harmonized CPTAC3 7e5a8543-563f-4ad3-b521-9ae64a215645 9c6db449503aa4ca0d1a3663f7f4b979 {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.RNA-Seq.genomic.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.genomic.gdc_realn.bam 10702132282 BAM genomic harmonized CPTAC3 7e270fba-2d86-48c1-84a0-c8849a9d8604 524dbf8f2b488841bbb07596af23c11a {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor"} -C3N-01028.RNA-Seq.S1_L001_R1.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3868800621 FASTQ S1_L001_R1 unaligned CPTAC3 5da5910a-3545-4146-8fa5-625bfacc736a 18880e410c0d1c5af5f090c022c734e7 {"aliquot_tag": "ALQ_d5339587", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.RNA-Seq.S1_L001_R2.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 4234376345 FASTQ S1_L001_R2 unaligned CPTAC3 2103d5b9-3aa9-4c57-9b3c-d9f48ae67da2 9eb02ab2054671794ec1a33e5318c0e3 {"aliquot_tag": "ALQ_d5339587", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.RNA-Seq.S7_L002_R1.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4241044740 FASTQ S7_L002_R1 unaligned CPTAC3 0e502f4f-7c06-4620-a27c-93040e07ff92 08f0247aac775e11cf0296b2e8abb427 {"aliquot_tag": "ALQ_807c6517", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01028.RNA-Seq.S7_L002_R2.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4473351267 FASTQ S7_L002_R2 unaligned CPTAC3 4d3156ee-bf4f-45ba-a0bb-d2b8d5433a22 c8f8559c2041b57a11125b85ef8b6217 {"aliquot_tag": "ALQ_807c6517", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01028.RNA-Seq.transcriptome.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.transcriptome.gdc_realn.bam 10261765619 BAM transcriptome harmonized CPTAC3 cc75d01f-462c-484b-b5e9-76730ce7fdb4 73a6148bdf7450051094b8ecf2232b24 {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.RNA-Seq.transcriptome.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.transcriptome.gdc_realn.bam 10505912014 BAM transcriptome harmonized CPTAC3 dc7b35a0-e536-495c-8b09-9fb4c1f11b9a b3a21280f5201c3e87065516d27dd7f3 {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor"} -C3N-01028.WGS.A C3N-01028 LSCC WGS tissue_normal CPT0091090006 CPT0091090006.WholeGenome.RP-1303.bam 56268354201 BAM aligned CPTAC3 be93eb8e-59f1-45fe-b313-b1fb8ab5aefe e54c827b956d54010a057ef4e67e77b5 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.WGS.A.hg38 C3N-01028 LSCC WGS tissue_normal CPT0091090006 559f5fdf-bd53-4226-8288-4cf99d291e00_wgs_gdc_realn.bam 82457230957 BAM harmonized CPTAC3 1f7b1e37-c50a-42a8-9ed0-8f387389e9e9 ac04aa0325de643ef91110b6264a25ab {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.WGS.N C3N-01028 LSCC WGS blood_normal CPT0091160002 CPT0091160002.WholeGenome.RP-1303.bam 60353648122 BAM aligned CPTAC3 79c5faa5-ad20-424d-ade0-7213b07d0e7d 838374553ff23c50d34af8b088d42191 {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01028.WGS.N.hg38 C3N-01028 LSCC WGS blood_normal CPT0091160002 b5b5f651-2f29-457b-b99c-9b08ba7238da_wgs_gdc_realn.bam 89663607689 BAM harmonized CPTAC3 ea1eecac-2f2c-4e5a-9b16-d3b0d7c8a7e6 dd94516008bcc899490398df01d9c5a2 {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01028.WGS.T C3N-01028 LSCC WGS tumor CPT0091050009 CPT0091050009.WholeGenome.RP-1303.bam 60565689828 BAM aligned CPTAC3 e66ca1e0-ace3-4cb7-bbf6-d7dfefe2d11d 76de3494d336a436bafafa2093c0f4a0 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor"} -C3N-01028.WGS.T.hg38 C3N-01028 LSCC WGS tumor CPT0091050009 5447f151-e584-4e44-97c2-781182eb562a_wgs_gdc_realn.bam 89430487483 BAM harmonized CPTAC3 ddf4d672-37ad-4652-ad3d-299170bcbd9e b5c782512506532e5e87cf51760697f2 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor"} -C3N-01028.WXS.A C3N-01028 LSCC WXS tissue_normal CPT0091090006 CPT0091090006.WholeExome.RP-1303.bam 30815278914 BAM aligned CPTAC3 437c66b3-a513-432a-9616-4aea42b06b48 96248a837a06723f1acee844e03bbc18 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.WXS.A.hg38 C3N-01028 LSCC WXS tissue_normal CPT0091090006 559f5fdf-bd53-4226-8288-4cf99d291e00_wxs_gdc_realn.bam 41290980391 BAM harmonized CPTAC3 ae20979a-153b-4f5e-a329-93f7e0688429 021904cca6c58da96d72ce19ae00a674 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01028.WXS.N C3N-01028 LSCC WXS blood_normal CPT0091160002 CPT0091160002.WholeExome.RP-1303.bam 33839672386 BAM aligned CPTAC3 a2392265-34b6-4e17-88b1-c1af873f8774 9f1272f2e078daede32123897cfa68f1 {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01028.WXS.N.hg38 C3N-01028 LSCC WXS blood_normal CPT0091160002 b5b5f651-2f29-457b-b99c-9b08ba7238da_wxs_gdc_realn.bam 44712262207 BAM harmonized CPTAC3 d72971a0-0f9c-4978-aeaf-441aa81fc4a5 5f0b19cb4ef82ea2a69793330d9457df {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01028.WXS.T C3N-01028 LSCC WXS tumor CPT0091050009 CPT0091050009.WholeExome.RP-1303.bam 40842277733 BAM aligned CPTAC3 296971d2-12c1-47ae-bf5e-8d91d60dd635 c2b2099377602982f32fb25adc0489f3 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor"} -C3N-01028.WXS.T.hg38 C3N-01028 LSCC WXS tumor CPT0091050009 5447f151-e584-4e44-97c2-781182eb562a_wxs_gdc_realn.bam 55407991570 BAM harmonized CPTAC3 c77c4468-8abe-4c08-b6ce-ee23313abc6e 9d183b6d8f02a6abb9cc2dfc7b79291b {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor"} -C3N-01030.MethArray.Green.A C3N-01030 LUAD Methylation_Array tissue_normal CPT0091260008 203028200101_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 fce28921-e7f7-42df-9a56-ea9f698b7a9f a9476239d2e67bd9bc27feec59e4de9c {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.MethArray.Green.T C3N-01030 LUAD Methylation_Array tumor CPT0091240009 202234370119_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cfad7cae-00b8-4745-a228-4126a610fcf1 de1c43bf11266e19b048f086b231f4dc {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor"} -C3N-01030.MethArray.Red.A C3N-01030 LUAD Methylation_Array tissue_normal CPT0091260008 203028200101_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 d95b5631-d6ff-4704-8a9d-c44928e7717c fcd39f8b0d64bb01e3f78b2cdd158b9e {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.MethArray.Red.T C3N-01030 LUAD Methylation_Array tumor CPT0091240009 202234370119_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b0cb1d4-88eb-44ce-bc62-07241b75ea89 c59104429290b1789fbca93b30097fa2 {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor"} -C3N-01030.miRNA-Seq.A.hg38 C3N-01030 LUAD miRNA-Seq tissue_normal CPT0091260005 78ca17b3-d543-4e88-a846-bf1ad802318f_mirnaseq_gdc_realn.bam 327191548 BAM harmonized CPTAC3 263a6702-b52e-4676-be96-f754db2a5ee2 f16be94550d8d12a2ba0c7c2a7916d4a {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.miRNA-Seq.S17_L007_R1.A C3N-01030 LUAD miRNA-Seq tissue_normal CPT0091260005 181108_UNC31-K00269_0162_AH255GBBXY_GACGAC_S17_L007_R1_001.unaln.bam 301266718 BAM S17_L007_R1 unaligned CPTAC3 3204534e-e2a2-4bb7-a9d4-58c8eb5daf21 6b10667f987540568d42b49150acae4e {"aliquot_tag": "ALQ_131def76", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.miRNA-Seq.S19_L006_R1.T C3N-01030 LUAD miRNA-Seq tumor CPT0091240006 180828_UNC32-K00270_0112_AHWTLNBBXX_ACAGTG_S19_L006_R1_001.unaln.bam 241300830 BAM S19_L006_R1 unaligned CPTAC3 bb2b2a4c-c778-49e5-b7b3-8998bf738fe8 d44870da90881914bb5873adefd242e3 {"aliquot_tag": "ALQ_f0d4edac", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01030.miRNA-Seq.T.hg38 C3N-01030 LUAD miRNA-Seq tumor CPT0091240006 f0d170a6-dc9d-4334-8a34-3c0ec44fd359_mirnaseq_gdc_realn.bam 266044511 BAM harmonized CPTAC3 ae3424ab-15ba-45b0-bb20-ea1b43e73ebf 44a08955a3b38b84b8dc49e8218cdd43 {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor"} -C3N-01030.RNA-Seq.chimeric.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.chimeric.gdc_realn.bam 50224722 BAM chimeric harmonized CPTAC3 c3a2f456-2850-4133-bde5-3990b92a5170 1c332886e8f79203e083edb2d7ea5ed2 {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.RNA-Seq.chimeric.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.chimeric.gdc_realn.bam 44025327 BAM chimeric harmonized CPTAC3 b31912e7-eb1b-4d2e-b518-0d61fba86a99 5af80a42629cc0540f5c1b455bbb9b89 {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor"} -C3N-01030.RNA-Seq.genomic.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.genomic.gdc_realn.bam 8295755699 BAM genomic harmonized CPTAC3 2d8f4280-3bf6-4c9e-873e-230d5a127cf5 b959f73a06b6a2b37c027eaa90a86477 {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.RNA-Seq.genomic.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.genomic.gdc_realn.bam 9676221765 BAM genomic harmonized CPTAC3 805ca5c6-6092-42b6-9456-5ff271432f94 15f6fdc36bdf1a03e1e28896b335ae3a {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor"} -C3N-01030.RNA-Seq.S3_L001_R1.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4273563787 FASTQ S3_L001_R1 unaligned CPTAC3 c8302fca-0062-44b5-b3ee-0f8a13bfa37f 821a3bbaf2955cfa148da3fa8491b5bb {"aliquot_tag": "ALQ_f0d4edac", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01030.RNA-Seq.S3_L001_R2.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4854534681 FASTQ S3_L001_R2 unaligned CPTAC3 1ec23d45-d1f7-4de2-9539-89461d39955f cbe9bcda8349cd48c43d9325991e6cce {"aliquot_tag": "ALQ_f0d4edac", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01030.RNA-Seq.S6_L002_R1.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R1_001.fastq.gz 3916142213 FASTQ S6_L002_R1 unaligned CPTAC3 589a0efa-cfe9-4320-957e-85719240f692 3a6316d1c94d6ec7fba99ba8c2ac0eee {"aliquot_tag": "ALQ_131def76", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.RNA-Seq.S6_L002_R2.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R2_001.fastq.gz 4255217192 FASTQ S6_L002_R2 unaligned CPTAC3 7d6d2c3b-d118-4fab-bc54-54ad4136d5ca 2540b8b88dffaa1758d39b72f3d80d95 {"aliquot_tag": "ALQ_131def76", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.RNA-Seq.transcriptome.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.transcriptome.gdc_realn.bam 10092418817 BAM transcriptome harmonized CPTAC3 71450099-da36-4d65-8a0b-8b39f942af13 cd52dfddbe050133f73c682b9fa1109c {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.RNA-Seq.transcriptome.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.transcriptome.gdc_realn.bam 11629159377 BAM transcriptome harmonized CPTAC3 7937eb71-9efc-4675-88d1-00eb8be0721b fd071adb0321d766d8bee43a3672d56f {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor"} -C3N-01030.WGS.A C3N-01030 LUAD WGS tissue_normal CPT0091260008 CPT0091260008.WholeGenome.RP-1303.bam 53384056860 BAM aligned CPTAC3 abf466c9-a2c2-4425-9c70-4dc7c1529fbe 6aa0fa5218301a6f793730763fb96e57 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.WGS.A.hg38 C3N-01030 LUAD WGS tissue_normal CPT0091260008 b8952bf8-d01a-4ea8-bb07-957e3cc6fd55_wgs_gdc_realn.bam 77520063993 BAM harmonized CPTAC3 4b6c4724-11db-44b3-94df-39520177da76 7317f16985a05223aa7e812b92ec6f14 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.WGS.N C3N-01030 LUAD WGS blood_normal CPT0091500002 CPT0091500002.WholeGenome.RP-1303.bam 67386461111 BAM aligned CPTAC3 3167a74c-9ec2-439e-a2fa-f4ab6a25c207 74f2435a4a55ba0821a803227393a712 {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01030.WGS.N.hg38 C3N-01030 LUAD WGS blood_normal CPT0091500002 8e390124-ff80-417f-b8c3-a611f6e4fcbe_wgs_gdc_realn.bam 99833243257 BAM harmonized CPTAC3 7772f460-5f6f-4696-ac37-33d05f47a1ae 8479dbe7f56323474a7c73dc416b57cb {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01030.WGS.T C3N-01030 LUAD WGS tumor CPT0091240009 CPT0091240009.WholeGenome.RP-1303.bam 60271970182 BAM aligned CPTAC3 1f86f25c-f8c0-42f0-b2a0-3a41f5a2ed3a c643d1c4ee0b28b5d61fbbc3649ea47c {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor"} -C3N-01030.WGS.T.hg38 C3N-01030 LUAD WGS tumor CPT0091240009 d75c8fba-a99e-4930-b9fe-514d1e6db377_wgs_gdc_realn.bam 88048291874 BAM harmonized CPTAC3 3051cae9-adf3-4350-a963-6e9a108e22a9 d08b7d0e7f06c35286b20c84f22a9c80 {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor"} -C3N-01030.WXS.A C3N-01030 LUAD WXS tissue_normal CPT0091260008 CPT0091260008.WholeExome.RP-1303.bam 29693549222 BAM aligned CPTAC3 ca51828b-e584-4be6-a505-5f6acb91f280 052dfec3d984eeda15ee25061a881961 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.WXS.A.hg38 C3N-01030 LUAD WXS tissue_normal CPT0091260008 b8952bf8-d01a-4ea8-bb07-957e3cc6fd55_wxs_gdc_realn.bam 40791022357 BAM harmonized CPTAC3 f9c42796-05c9-4a06-b767-7636f148387a 7216fdc5494d3912be7dd583107fe0e5 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01030.WXS.N C3N-01030 LUAD WXS blood_normal CPT0091500002 CPT0091500002.WholeExome.RP-1303.bam 27165213033 BAM aligned CPTAC3 54a1e77a-61bd-40e7-bfbb-6b69b9281e33 24a5d4e1fa0650db967c9a85721cd6bf {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01030.WXS.N.hg38 C3N-01030 LUAD WXS blood_normal CPT0091500002 8e390124-ff80-417f-b8c3-a611f6e4fcbe_wxs_gdc_realn.bam 35423496965 BAM harmonized CPTAC3 3f1ca67d-07df-4c01-a671-0f19f5742dc1 657d240882d1853bc55013b048832e69 {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01030.WXS.T C3N-01030 LUAD WXS tumor CPT0091240009 CPT0091240009.WholeExome.RP-1303.bam 27967561160 BAM aligned CPTAC3 f55b89e4-e87d-47ff-8394-75ed0286d87f fe2571f25f9603ef4767b5a43a7b7a65 {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor"} -C3N-01030.WXS.T.hg38 C3N-01030 LUAD WXS tumor CPT0091240009 d75c8fba-a99e-4930-b9fe-514d1e6db377_wxs_gdc_realn.bam 38477441184 BAM harmonized CPTAC3 51279e23-b65d-43ee-a12f-f4ce44f3a8c4 2b1c245fa5bd8f6f4548ab397153b51c {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor"} -C3N-01071.MethArray.Green.A C3N-01071 LUAD Methylation_Array tissue_normal CPT0070080009 203028200093_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 415eed32-5098-4e13-bf31-319c1d227151 84bf62f81a88b80cbcdcf9ce94e54a5b {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.MethArray.Green.T C3N-01071 LUAD Methylation_Array tumor CPT0070060006 202178770143_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 0641cc18-43ca-46eb-9bd3-a748dbab8a97 fb6de534229641825e41ffdb73fa1696 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01071.MethArray.Red.A C3N-01071 LUAD Methylation_Array tissue_normal CPT0070080009 203028200093_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 d1be892a-a064-40ab-b0bf-01e22e6a872c 8a45835d2d4890286bf015f3956a520b {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.MethArray.Red.T C3N-01071 LUAD Methylation_Array tumor CPT0070060006 202178770143_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 e5a4d3b6-04be-4724-b369-e722d9f1c4a8 034fc2f7f0bf9d11f9653cc482828d58 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01071.miRNA-Seq.A.hg38 C3N-01071 LUAD miRNA-Seq tissue_normal CPT0070080006 f159d093-0679-4d9f-ac10-f734d7fce5dd_mirnaseq_gdc_realn.bam 281883583 BAM harmonized CPTAC3 0c2ec088-2e17-4692-8567-be163f7f3b4d 8aad81f026bfe2fa78e5db8a665df29c {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.miRNA-Seq.S3_L005_R1.T C3N-01071 LUAD miRNA-Seq tumor CPT0070060009 181119_UNC31-K00269_0165_AH27WCBBXY_ATTCCT_S3_L005_R1_001.unaln.bam 233800403 BAM S3_L005_R1 unaligned CPTAC3 1eb3552d-bd1a-480e-aeff-a30478df1660 b2f52397dee4b30f5c72b70504a6c503 {"aliquot_tag": "ALQ_e49e1bd0", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01071.miRNA-Seq.S3_L007_R1.A C3N-01071 LUAD miRNA-Seq tissue_normal CPT0070080006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L007_R1_001.unaln.bam 261613814 BAM S3_L007_R1 unaligned CPTAC3 2966831f-24bd-4c7e-ba90-1b2ccee361a5 960e0e84a3ef75e1a73fba1e3b7bc14f {"aliquot_tag": "ALQ_cb11b820", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.miRNA-Seq.T.hg38 C3N-01071 LUAD miRNA-Seq tumor CPT0070060009 91810475-e5e5-45d8-8f0e-e2684a40554e_mirnaseq_gdc_realn.bam 259867757 BAM harmonized CPTAC3 c1c9c979-ad03-458b-80b1-2049ac2c3abc b6e24d5913a649564046109e8a30f9c5 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor"} -C3N-01071.RNA-Seq.chimeric.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.chimeric.gdc_realn.bam 81962019 BAM chimeric harmonized CPTAC3 3f913993-9e56-4e59-b1d0-2df53ca6ac67 4e09607806bfb8671b7bd946e27fcded {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.RNA-Seq.chimeric.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.chimeric.gdc_realn.bam 33745070 BAM chimeric harmonized CPTAC3 057bf497-4971-48fc-9e17-0edab923f6c8 ef4567828de96d96063b3484c2333f53 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor"} -C3N-01071.RNA-Seq.genomic.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.genomic.gdc_realn.bam 8470730808 BAM genomic harmonized CPTAC3 565426a1-0037-411b-96d7-876ac8ffbd3e d86a13a375b9adcd6b1b5e3d5bd4ffd4 {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.RNA-Seq.genomic.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.genomic.gdc_realn.bam 9916193022 BAM genomic harmonized CPTAC3 80f39d21-d474-4335-bebb-06efbab2e229 811db2caa19ff4bebbcf04be695f7ca7 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor"} -C3N-01071.RNA-Seq.S23_L006_R1.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R1_001.fastq.gz 4051387909 FASTQ S23_L006_R1 unaligned CPTAC3 4c4d3540-3ac8-4f35-9431-3904ccfae26d 5dc2b368c330cf6b8fc3532eba7b1fda {"aliquot_tag": "ALQ_cb11b820", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.RNA-Seq.S23_L006_R2.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R2_001.fastq.gz 4448966413 FASTQ S23_L006_R2 unaligned CPTAC3 4f1d8c52-c31b-408f-9b9e-cf6b0e51529a 8b06309d728850b6517bdf7d8803a96a {"aliquot_tag": "ALQ_cb11b820", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.RNA-Seq.S6_L002_R1.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4537647048 FASTQ S6_L002_R1 unaligned CPTAC3 1f0efdb6-32db-4f59-91b4-9a89cf3555ec e6e058f48f6e852808107ffe703fa52b {"aliquot_tag": "ALQ_e49e1bd0", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01071.RNA-Seq.S6_L002_R2.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4857174754 FASTQ S6_L002_R2 unaligned CPTAC3 8fdcbcc3-2fd3-485d-920d-4b16188bda48 34b30c8742e73cd425abd2dffe78b7d4 {"aliquot_tag": "ALQ_e49e1bd0", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01071.RNA-Seq.transcriptome.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.transcriptome.gdc_realn.bam 10587750803 BAM transcriptome harmonized CPTAC3 50af55aa-58f5-49e9-ba9a-d274ff06015f 2f57c5064154dedf041683677dd4398c {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.RNA-Seq.transcriptome.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.transcriptome.gdc_realn.bam 13663244716 BAM transcriptome harmonized CPTAC3 ac3ea539-4865-43f3-9b32-ce36a2b4a9b3 76484ccbda1d2b7e7fcd76db9686e2f2 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor"} -C3N-01071.Targeted.T C3N-01071 LUAD Targeted_Sequencing tumor CPT0070060006 CPT0070060006.CustomSelection.RP-1303.PDO-18786.bam 7895288857 BAM aligned CPTAC3 0fcaad4c-22d4-41dd-a033-d0596730c792 0dda275d716e25453622e0a82960c5d3 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01071.Targeted.T.hg38 C3N-01071 LUAD Targeted_Sequencing tumor CPT0070060006 cc5cdc32-6156-4237-8640-0855f5c3ba0a_targetedsequencing_gdc_realn.bam 10591900415 BAM harmonized CPTAC3 23246e81-6469-4bc9-b0cd-358f32d10ac7 7d3c01bc80f0c4cf42b4307e21268859 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01071.WGS.A C3N-01071 LUAD WGS tissue_normal CPT0070080009 CPT0070080009.WholeGenome.RP-1303.bam 61813471468 BAM aligned CPTAC3 b068ebe6-2149-41c3-870a-87e4dd4e9d10 c4ba80c584bd14f8cde0652b902905e7 {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.WGS.A.hg38 C3N-01071 LUAD WGS tissue_normal CPT0070080009 f5a98d66-4ef1-4359-8e11-998be462953e_wgs_gdc_realn.bam 90198176714 BAM harmonized CPTAC3 64378f5a-db58-4b48-9f06-8b684cb33503 4713df07084152d95dff41568d3d9a3e {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.WGS.N C3N-01071 LUAD WGS blood_normal CPT0070160002 CPT0070160002.WholeGenome.RP-1303.bam 74073356806 BAM aligned CPTAC3 c5476303-838c-41e1-a24c-fbfe0ea5e571 14907c6dbbde6cf4eb45cf147e4a49de {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01071.WGS.N.hg38 C3N-01071 LUAD WGS blood_normal CPT0070160002 aee98919-02bc-4677-80c2-675b148f9d7b_gdc_realn.bam 110229586482 BAM harmonized CPTAC3 a252f982-d631-44eb-a70b-0bd283386cb3 eece361d5e92a3086f113eda7e383977 {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01071.WGS.T C3N-01071 LUAD WGS tumor CPT0070060006 CPT0070060006.WholeGenome.RP-1303.bam 66539212899 BAM aligned CPTAC3 572164b8-1972-4352-b798-316664a1dbce d1fc128229993c1ee47e25738a61a0f1 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01071.WGS.T.hg38 C3N-01071 LUAD WGS tumor CPT0070060006 cc5cdc32-6156-4237-8640-0855f5c3ba0a_gdc_realn.bam 99610364744 BAM harmonized CPTAC3 60b3f014-79d2-4da2-9b18-85ecd73a1ee2 0dde44fd025a683e3e5457f4e0466286 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01071.WXS.A C3N-01071 LUAD WXS tissue_normal CPT0070080009 CPT0070080009.WholeExome.RP-1303.bam 39441924132 BAM aligned CPTAC3 399b44d0-e0bc-4a31-ac3b-8cc0a241106b c4198d52f1bfa2a0f2d7b4d3a31bf68a {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.WXS.A.hg38 C3N-01071 LUAD WXS tissue_normal CPT0070080009 f5a98d66-4ef1-4359-8e11-998be462953e_wxs_gdc_realn.bam 53998923183 BAM harmonized CPTAC3 577e1de1-f58a-47c0-93e7-b8ad050e6fe9 4c4d9850c2aaf3249e90010633034b0b {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01071.WXS.N C3N-01071 LUAD WXS blood_normal CPT0070160002 CPT0070160002.WholeExome.RP-1303.bam 32211899956 BAM aligned CPTAC3 7e4589ee-dfca-4f05-b8ad-402814743ab0 f29c8b220714486c5185f2a99a4fab65 {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01071.WXS.N.hg38 C3N-01071 LUAD WXS blood_normal CPT0070160002 aee98919-02bc-4677-80c2-675b148f9d7b_gdc_realn.bam 44855601786 BAM harmonized CPTAC3 846f177b-75df-4e30-a921-222756fb3a62 043049e740a09f6a8ff1599b4dd56ffa {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01071.WXS.T C3N-01071 LUAD WXS tumor CPT0070060006 CPT0070060006.WholeExome.RP-1303.bam 32140915851 BAM aligned CPTAC3 99beee78-99f6-45a1-8a7f-a385cacbad9c 765da2f9d60bdeb279132cba723f2e3b {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01071.WXS.T.hg38 C3N-01071 LUAD WXS tumor CPT0070060006 cc5cdc32-6156-4237-8640-0855f5c3ba0a_gdc_realn.bam 44541647564 BAM harmonized CPTAC3 b06453df-4a46-4c8a-91c2-2df02c8acf3c a91aec251942989c88d5e3ecb4d74177 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor"} -C3N-01072.MethArray.Green.A C3N-01072 LUAD Methylation_Array tissue_normal CPT0084170009 203027390113_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 d3c58c9e-6b2b-46cc-8862-0173c95e3f5b 2c4e77e563fda472e5390df213a4a6e8 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.MethArray.Green.T C3N-01072 LUAD Methylation_Array tumor CPT0084140009 202234360029_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 345d2bfd-9d02-4ae7-aab5-50f15ea1f45f 86a44e6c87baddb36e14629504130f9c {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor"} -C3N-01072.MethArray.Red.A C3N-01072 LUAD Methylation_Array tissue_normal CPT0084170009 203027390113_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 36f06419-6a06-4af8-9390-8191ee3db140 a99181daa4aa1040775d565a219db84f {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.MethArray.Red.T C3N-01072 LUAD Methylation_Array tumor CPT0084140009 202234360029_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 66c8be3d-ec9f-44e1-8abd-f22cefd0aa60 ff4f23b4f4d769fe510fb89ded3e1adb {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor"} -C3N-01072.miRNA-Seq.A.hg38 C3N-01072 LUAD miRNA-Seq tissue_normal CPT0084170006 0cc7eafe-4164-41c8-9e02-c8153de11109_mirnaseq_gdc_realn.bam 202308690 BAM harmonized CPTAC3 d8a923bd-e12c-4bc7-899c-630e492b638a 670a013ed0484004c8db47ead2f2c30a {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.miRNA-Seq.S39_L008_R1.T C3N-01072 LUAD miRNA-Seq tumor CPT0084140006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTAGAG_S39_L008_R1_001.unaln.bam 259989093 BAM S39_L008_R1 unaligned CPTAC3 efb416fd-43db-458d-bd13-f7ba24885c30 f31ff1efff549a47bad73cb2e6725932 {"aliquot_tag": "ALQ_e8d2b03b", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01072.miRNA-Seq.S3_L005_R1.A C3N-01072 LUAD miRNA-Seq tissue_normal CPT0084170006 181108_UNC31-K00269_0163_BH23TVBBXY_TTAGGC_S3_L005_R1_001.unaln.bam 177875037 BAM S3_L005_R1 unaligned CPTAC3 be0a4db0-031d-4c4b-9a24-068c67e58a7d cae1a50138d5eaf7432d735fd0dce57d {"aliquot_tag": "ALQ_af72caeb", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.miRNA-Seq.T.hg38 C3N-01072 LUAD miRNA-Seq tumor CPT0084140006 c6dad8df-9b89-43f9-b7ed-6fa834065834_mirnaseq_gdc_realn.bam 280437044 BAM harmonized CPTAC3 a7e51c5c-6ee3-4e16-9579-c46b3b1d1274 371a6df1b4c36083d56568695a67b802 {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor"} -C3N-01072.RNA-Seq.chimeric.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.chimeric.gdc_realn.bam 60062766 BAM chimeric harmonized CPTAC3 137bbb1a-b90e-44e9-9830-29c0744e2317 a6973c416b43a5b19781fd393231ee06 {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.RNA-Seq.chimeric.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.chimeric.gdc_realn.bam 42775123 BAM chimeric harmonized CPTAC3 980d570b-311c-490c-8fd1-f2e69eafe6e6 3bc62d29afdc323fe7680a7822e86f5c {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor"} -C3N-01072.RNA-Seq.genomic.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.genomic.gdc_realn.bam 8815765170 BAM genomic harmonized CPTAC3 5b4f9a66-7245-42e9-a2ad-992f7d47fd51 675ddafac90d6e570e9d35a3e349a6ae {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.RNA-Seq.genomic.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.genomic.gdc_realn.bam 9270899583 BAM genomic harmonized CPTAC3 4e447c65-3511-4f22-aea6-f6444c02f73f ffbfc928e9f2a0c8c2a2cc54ca91daed {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor"} -C3N-01072.RNA-Seq.S19_L005_R1.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R1_001.fastq.gz 4245015905 FASTQ S19_L005_R1 unaligned CPTAC3 629cd809-f46d-47f5-975c-1343d60d009f 350da5f8e00fd69fce260da85626db2d {"aliquot_tag": "ALQ_af72caeb", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.RNA-Seq.S19_L005_R2.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R2_001.fastq.gz 4441659588 FASTQ S19_L005_R2 unaligned CPTAC3 9011b5e2-2438-40be-9b4b-6534bd6a8d87 75ee6163487ebd8b411b6322757cd9a1 {"aliquot_tag": "ALQ_af72caeb", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.RNA-Seq.S3_L001_R1.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4179362530 FASTQ S3_L001_R1 unaligned CPTAC3 d10d5bc1-2946-463a-a3d0-9f96df9c5039 742381c698b003d7a621c2da2b661135 {"aliquot_tag": "ALQ_e8d2b03b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01072.RNA-Seq.S3_L001_R2.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4671077451 FASTQ S3_L001_R2 unaligned CPTAC3 3fa41767-11d9-4377-8d3b-730f2135b130 02457eeb39c967a429e9c05c97da1480 {"aliquot_tag": "ALQ_e8d2b03b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01072.RNA-Seq.transcriptome.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.transcriptome.gdc_realn.bam 11061464622 BAM transcriptome harmonized CPTAC3 f6fea8f9-8b76-4ea5-be73-a1e4fc093119 94ad9054c2d91abad53dee03071e59b1 {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.RNA-Seq.transcriptome.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.transcriptome.gdc_realn.bam 11018349263 BAM transcriptome harmonized CPTAC3 876eca91-8770-4ef7-a144-6fa470155185 435c1e0d239b384f8050be0a086df29b {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor"} -C3N-01072.WGS.A C3N-01072 LUAD WGS tissue_normal CPT0084170009 CPT0084170009.WholeGenome.RP-1303.bam 56304006242 BAM aligned CPTAC3 1f4a5eae-3fd0-46ec-b89e-71007e6fabe5 baecff9e3e93fc0604f54456fe28cb93 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.WGS.A.hg38 C3N-01072 LUAD WGS tissue_normal CPT0084170009 82a84fd7-6aea-457a-8a7b-1e5b55ff8ba0_wgs_gdc_realn.bam 82193835312 BAM harmonized CPTAC3 cffd5dc7-404d-4203-b8a2-b9e051b42d59 98b9e65450d28434bb30aabd2788b549 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.WGS.N C3N-01072 LUAD WGS blood_normal CPT0084190002 CPT0084190002.WholeGenome.RP-1303.bam 60208273306 BAM aligned CPTAC3 fc4261b4-5d9d-4e10-a9a3-93fce0f3f78a 70d82a410b61268f1dab24775f3d1167 {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal"} -C3N-01072.WGS.N.hg38 C3N-01072 LUAD WGS blood_normal CPT0084190002 b667954b-08c5-40d6-ba47-697814f6e1b0_wgs_gdc_realn.bam 88398668137 BAM harmonized CPTAC3 783cd0c2-4d15-4848-860d-4bf5bc222cdc b3837354fec8f76713dcc3d789fb1cc9 {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal"} -C3N-01072.WGS.T C3N-01072 LUAD WGS tumor CPT0084140009 CPT0084140009.WholeGenome.RP-1303.bam 60847172050 BAM aligned CPTAC3 49cc22a6-48c7-4a55-81c3-d734bbcb1ab6 160c1dbb375c5e2f047ecd5f54998de9 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor"} -C3N-01072.WGS.T.hg38 C3N-01072 LUAD WGS tumor CPT0084140009 76279939-7003-484f-b026-9560e85eab31_wgs_gdc_realn.bam 91404229914 BAM harmonized CPTAC3 3161a1c1-0568-4b0c-8eb4-104d4ccb7096 9cd1ea8380ec162d9344e6c2ed6c0c31 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor"} -C3N-01072.WXS.A C3N-01072 LUAD WXS tissue_normal CPT0084170009 CPT0084170009.WholeExome.RP-1303.bam 45267057509 BAM aligned CPTAC3 ed882b69-6061-4e04-9a1e-d7d438c2bf01 b3310fa3c7fdd250818c41ab7bf24817 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.WXS.A.hg38 C3N-01072 LUAD WXS tissue_normal CPT0084170009 82a84fd7-6aea-457a-8a7b-1e5b55ff8ba0_wxs_gdc_realn.bam 61475550886 BAM harmonized CPTAC3 57cf119d-c924-4004-b61e-ecf48a4a2d0d 6e5f2b110f5c0e946c3515997b7378ea {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01072.WXS.N C3N-01072 LUAD WXS blood_normal CPT0084190002 CPT0084190002.WholeExome.RP-1303.bam 35932519336 BAM aligned CPTAC3 df84509c-0233-491f-8a06-e6379079e91c 95629fa587468a644cd97f589a0826b9 {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal"} -C3N-01072.WXS.N.hg38 C3N-01072 LUAD WXS blood_normal CPT0084190002 b667954b-08c5-40d6-ba47-697814f6e1b0_wxs_gdc_realn.bam 47682532179 BAM harmonized CPTAC3 0170c81b-a67f-4609-bf36-9e33f571350f a083a00b906c5ccf9464c7a170937fdd {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal"} -C3N-01072.WXS.T C3N-01072 LUAD WXS tumor CPT0084140009 CPT0084140009.WholeExome.RP-1303.bam 35644850434 BAM aligned CPTAC3 9e1a9d11-5382-4088-a83d-7c47d19e1560 24982f917800a3a76231eee69dc26e57 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor"} -C3N-01072.WXS.T.hg38 C3N-01072 LUAD WXS tumor CPT0084140009 76279939-7003-484f-b026-9560e85eab31_wxs_gdc_realn.bam 48910624723 BAM harmonized CPTAC3 f95231ee-33c9-4d9e-9053-05db2dcc34d2 d2db6306217319cbbae7c443230b0e02 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor"} -C3N-01074.MethArray.Green.T C3N-01074 LUAD Methylation_Array tumor CPT0105270009 202234380094_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 9ffe2fa1-6ee0-4d65-b558-c8b4c5da87ac f283e7670ee53f4b0710d6bbb445acfa {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor"} -C3N-01074.MethArray.Red.T C3N-01074 LUAD Methylation_Array tumor CPT0105270009 202234380094_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 f40069b2-a2c3-4506-8551-b3f600a310ce f956272ca00aec650111dbfdad32ad9d {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor"} -C3N-01074.miRNA-Seq.S48_L007_R1.T C3N-01074 LUAD miRNA-Seq tumor CPT0105270006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGGCA_S48_L007_R1_001.unaln.bam 167051964 BAM S48_L007_R1 unaligned CPTAC3 aea9b493-ae77-4f8c-abbf-f44bf18a4806 37f7ed2022a9ac02398193a6a958d7a3 {"aliquot_tag": "ALQ_4b0fbc07", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01074.miRNA-Seq.T.hg38 C3N-01074 LUAD miRNA-Seq tumor CPT0105270006 5284842c-30b5-4488-8444-a06be245de7a_mirnaseq_gdc_realn.bam 183642295 BAM harmonized CPTAC3 60ee0955-3e9d-44e9-b2da-125a05de80ff 295d78fb42884c18b1ffb4a78b6c51de {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor"} -C3N-01074.RNA-Seq.chimeric.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.chimeric.gdc_realn.bam 33858279 BAM chimeric harmonized CPTAC3 df9bdae9-d5fa-45e3-99b7-ab00e9d38067 8023ec8ef717888288f254756be74928 {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor"} -C3N-01074.RNA-Seq.genomic.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.genomic.gdc_realn.bam 8873171313 BAM genomic harmonized CPTAC3 e84c3a8a-5948-46db-a2e3-0319853eb631 605f63f113beeff8295ec02743dfa262 {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor"} -C3N-01074.RNA-Seq.S14_L004_R1.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4026443433 FASTQ S14_L004_R1 unaligned CPTAC3 21656919-971c-49c2-964b-4c42eee9c7b1 fcf6b46d5e446cc1873689c1f38b496f {"aliquot_tag": "ALQ_4b0fbc07", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01074.RNA-Seq.S14_L004_R2.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4425737679 FASTQ S14_L004_R2 unaligned CPTAC3 79c31b21-d6e0-49fe-9e4e-23481b77ad7a c8b789eb196ebdbc9a68aef76386738c {"aliquot_tag": "ALQ_4b0fbc07", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01074.RNA-Seq.transcriptome.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.transcriptome.gdc_realn.bam 12374657307 BAM transcriptome harmonized CPTAC3 e3f7bc16-2f36-4765-bcc6-83d014a235a8 2b54ea0882952255bb98278cc0f79677 {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor"} -C3N-01074.WGS.N C3N-01074 LUAD WGS blood_normal CPT0107740002 CPT0107740002.WholeGenome.RP-1303.bam 58863976811 BAM aligned CPTAC3 b5ab50b1-3dee-4016-af64-72ff391a9a6c cceaca4955ef9fc72c2a6a7fa0474c00 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal"} -C3N-01074.WGS.N.hg38 C3N-01074 LUAD WGS blood_normal CPT0107740002 ba41c945-fc52-4c8e-b417-c26730c05dfb_wgs_gdc_realn.bam 87202550854 BAM harmonized CPTAC3 7c3c4966-40ee-433a-b1e6-f526fc0b3085 4b4782453908a2a442a6bf4014621365 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal"} -C3N-01074.WGS.T C3N-01074 LUAD WGS tumor CPT0105270009 CPT0105270009.WholeGenome.RP-1303.bam 59114317867 BAM aligned CPTAC3 05ffde4f-35b2-45d4-b655-db63f5d9ed93 6cb5579800aae8269d40237493d8adc3 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor"} -C3N-01074.WGS.T.hg38 C3N-01074 LUAD WGS tumor CPT0105270009 5968cc7b-3769-4e06-999a-61df8bfcd5e2_wgs_gdc_realn.bam 86799399244 BAM harmonized CPTAC3 6584e7c4-e8a5-4c8a-8e7a-bbdd8ac7957a fa33dc625aceb18bae710e74e50173c4 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor"} -C3N-01074.WXS.N C3N-01074 LUAD WXS blood_normal CPT0107740002 CPT0107740002.WholeExome.RP-1303.bam 43069560973 BAM aligned CPTAC3 931ea9e0-57d1-4e9f-9989-e2a17a944739 ebbef8d5b869248bbf4771ba7f9f6547 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal"} -C3N-01074.WXS.N.hg38 C3N-01074 LUAD WXS blood_normal CPT0107740002 ba41c945-fc52-4c8e-b417-c26730c05dfb_wxs_gdc_realn.bam 57202031288 BAM harmonized CPTAC3 717fbef0-092e-4897-8d11-2235c45bc508 30cb2e85abecf1d5a2af030b3e9fd663 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal"} -C3N-01074.WXS.T C3N-01074 LUAD WXS tumor CPT0105270009 CPT0105270009.WholeExome.RP-1303.bam 40322339213 BAM aligned CPTAC3 d4fcd5a1-2b60-4167-99ad-08f559962793 894861b4512bafea07c6dd6fad5cfe95 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor"} -C3N-01074.WXS.T.hg38 C3N-01074 LUAD WXS tumor CPT0105270009 5968cc7b-3769-4e06-999a-61df8bfcd5e2_wxs_gdc_realn.bam 55221091493 BAM harmonized CPTAC3 57874edd-2bce-423c-ac14-e35d46255524 e3c4402a228286aff9799dd100216e84 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor"} -C3N-01077.MethArray.Green.A C3N-01077 CCRCC Methylation_Array tissue_normal CPT0210800006 204930630084_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c0874cb5-eb19-456f-a10d-232b7af28edc 5db59430105804148d1ad2e421142934 {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.MethArray.Green.T C3N-01077 CCRCC Methylation_Array tumor CPT0210780006 203219760081_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 20e949ab-899e-4a66-b3cd-781e8fbb444c a3954c7359f54720ef468390dce8498b {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor"} -C3N-01077.MethArray.Red.A C3N-01077 CCRCC Methylation_Array tissue_normal CPT0210800006 204930630084_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa52360d-6e06-49ab-af3e-287eae78106d fbd842bb361c94e6909ed5658717d990 {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.MethArray.Red.T C3N-01077 CCRCC Methylation_Array tumor CPT0210780006 203219760081_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 7df391fc-44b3-40f5-b957-101bd7fd6006 cbc2e3fc1a1d92a8f1ada4283ded49fc {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor"} -C3N-01077.miRNA-Seq.A.hg38 C3N-01077 CCRCC miRNA-Seq tissue_normal CPT0210800009 814e4fd0-5c79-47d3-b2ba-a2a82f89de69_mirnaseq_gdc_realn.bam 262114274 BAM harmonized CPTAC3 044c64f1-f5ec-4ee1-acd4-2df5757c0551 eccdbf63267214dd3e9e6d87d432a9bc {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.miRNA-Seq.S14_L003_R1.A C3N-01077 CCRCC miRNA-Seq tissue_normal CPT0210800009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGGAAT_S14_L003_R1_001.unaln.bam 240634165 BAM S14_L003_R1 unaligned CPTAC3 c13d218d-ae00-45b4-9f2a-f9bb4cd83af1 42479ba5dfc1c9806b63ec7c37e480a2 {"aliquot_tag": "ALQ_6f144d1c", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.miRNA-Seq.S26_L008_R1.T C3N-01077 CCRCC miRNA-Seq tumor CPT0210780009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L008_R1_001.unaln.bam 206989939 BAM S26_L008_R1 unaligned CPTAC3 99c48127-7e01-49b0-8c98-47e62ebced76 ff12716971c56a107ef9eeef609f60e9 {"aliquot_tag": "ALQ_ae32b408", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01077.miRNA-Seq.T.hg38 C3N-01077 CCRCC miRNA-Seq tumor CPT0210780009 1e62bf3c-00ed-4288-b629-42ef355a4bf7_mirnaseq_gdc_realn.bam 222882292 BAM harmonized CPTAC3 44c934cf-fe58-4bb2-b8a1-67745c3161f8 09ab846c8caf8ec8114ebf44ed6e6754 {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor"} -C3N-01077.RNA-Seq.chimeric.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.chimeric.gdc_realn.bam 64524914 BAM chimeric harmonized CPTAC3 b8737694-7f6e-4bf7-96e0-881ebaa60394 fc7a547ed7e3e042cfe9d3cdfa9ddf2d {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.RNA-Seq.chimeric.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.chimeric.gdc_realn.bam 315561600 BAM chimeric harmonized CPTAC3 e691fabb-4f2c-4063-bc00-87117bb15154 de1f172aedec98801490a6803931047a {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor"} -C3N-01077.RNA-Seq.genomic.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.genomic.gdc_realn.bam 8366122461 BAM genomic harmonized CPTAC3 ea5ed8cb-f6ef-4730-a5b1-6bcef8e7189b 6361bbf2d7ffeadf769cade653770625 {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.RNA-Seq.genomic.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.genomic.gdc_realn.bam 8031638426 BAM genomic harmonized CPTAC3 7c4d1bee-8ccd-4841-a5e4-f1c04729951c d4a6f2af0cc73096efba5da155fa7937 {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor"} -C3N-01077.RNA-Seq.S13_L004_R1.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3523068878 FASTQ S13_L004_R1 unaligned CPTAC3 9f7e6538-ae79-4aa9-97b6-da7b44fda3f3 00ed944bf8b10a147fdc35b8dc7bd104 {"aliquot_tag": "ALQ_ae32b408", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01077.RNA-Seq.S13_L004_R2.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3819871107 FASTQ S13_L004_R2 unaligned CPTAC3 4b877408-30d0-4212-807e-27918248a90a 3ef8573a339da74cb304a5a086baa219 {"aliquot_tag": "ALQ_ae32b408", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01077.RNA-Seq.S15_L004_R1.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R1_001.fastq.gz 3988195464 FASTQ S15_L004_R1 unaligned CPTAC3 aee315a1-3280-4128-8aaa-c4accc4fc3b1 58b3d59443d95fb92ea1b71319dd723d {"aliquot_tag": "ALQ_6f144d1c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.RNA-Seq.S15_L004_R2.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R2_001.fastq.gz 4281849447 FASTQ S15_L004_R2 unaligned CPTAC3 f2452eaa-c386-44e5-bc04-c397f13982d7 ffd6f2e18e116828b3cd47be334333e1 {"aliquot_tag": "ALQ_6f144d1c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.RNA-Seq.transcriptome.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.transcriptome.gdc_realn.bam 9881760587 BAM transcriptome harmonized CPTAC3 3d042701-aa6b-42f7-968f-d4658e57f166 2f2c1c27a0575bbdf026fcbd095cfd50 {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.RNA-Seq.transcriptome.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.transcriptome.gdc_realn.bam 8609711178 BAM transcriptome harmonized CPTAC3 dffb1970-ff80-4708-b518-5a27fe86c1a2 34faf5ed07a3d74102715a63ed78b187 {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor"} -C3N-01077.WGS.N C3N-01077 CCRCC WGS blood_normal CPT0210880002 CPT0210880002.WholeGenome.RP-1303.bam 56342561416 BAM aligned CPTAC3 0b94d3f3-26a9-4a92-b22d-8f774bc4e389 3ae300ac8ca77961ded9389c208f55e1 {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal"} -C3N-01077.WGS.N.hg38 C3N-01077 CCRCC WGS blood_normal CPT0210880002 7cdf15b4-931f-4160-94fb-e8c95cce48da_wgs_gdc_realn.bam 83758844541 BAM harmonized CPTAC3 67f42b9f-dab7-4404-8b1a-2e6a0956df6c 2b6542c2b473851cac89378ff73b0499 {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal"} -C3N-01077.WGS.T C3N-01077 CCRCC WGS tumor CPT0210780006 CPT0210780006.WholeGenome.RP-1303.bam 55637314177 BAM aligned CPTAC3 918fe0b9-8e93-42ec-b368-8f83a6605f24 320bac013e3ac05d25a658b10d9f669a {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor"} -C3N-01077.WGS.T.hg38 C3N-01077 CCRCC WGS tumor CPT0210780006 6e83f210-21fe-4b48-80aa-5437252c05e2_wgs_gdc_realn.bam 83980787593 BAM harmonized CPTAC3 a76ef9e6-b595-4ceb-baf1-8195dc7fc535 0428182e84f29a2b7bc3780d7de198ff {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor"} -C3N-01077.WXS.A C3N-01077 CCRCC WXS tissue_normal CPT0210800006 CPT0210800006.WholeExome.RP-1303.bam 24309913843 BAM aligned CPTAC3 13044998-5584-448c-a0f9-27afdf6d93fa 48e949cc7b18b7b06c383b536bd9d1cb {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.WXS.A.hg38 C3N-01077 CCRCC WXS tissue_normal CPT0210800006 90a3f5b4-4ef3-4151-8361-d14929c06c41_wxs_gdc_realn.bam 33144592993 BAM harmonized CPTAC3 45e10a25-e4f9-4724-8fd7-5d43739121b2 e61c4b62d1448c053b10e4e8e397c7fa {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01077.WXS.N C3N-01077 CCRCC WXS blood_normal CPT0210880002 CPT0210880002.WholeExome.RP-1303.bam 27066672217 BAM aligned CPTAC3 27d141a2-3316-41af-8838-95802e4cac47 c656fb651a42d900ad1c15ddaeb6c258 {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal"} -C3N-01077.WXS.N.hg38 C3N-01077 CCRCC WXS blood_normal CPT0210880002 7cdf15b4-931f-4160-94fb-e8c95cce48da_wxs_gdc_realn.bam 37650806651 BAM harmonized CPTAC3 e0d576b5-1bd3-4bbf-be4d-a16b7e93fc37 55ccb6a299f5edfa4dc1aa653a86256b {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal"} -C3N-01077.WXS.T C3N-01077 CCRCC WXS tumor CPT0210780006 CPT0210780006.WholeExome.RP-1303.bam 18556925283 BAM aligned CPTAC3 40d11b6e-b1e8-41d8-b431-f1682492551d 68990e75e191be40f09f2f032963b68f {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor"} -C3N-01077.WXS.T.hg38 C3N-01077 CCRCC WXS tumor CPT0210780006 6e83f210-21fe-4b48-80aa-5437252c05e2_wxs_gdc_realn.bam 25979250352 BAM harmonized CPTAC3 c161cad9-f18c-4405-846e-93e9c8060ab8 5eeaf0de9d50cf6125319157473a2713 {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor"} -C3N-01078.MethArray.Green.A C3N-01078 CCRCC Methylation_Array tissue_normal CPT0210980006 204930640120_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3a7baed5-7f87-4b4f-a807-0a367a91adaa 9671217b3a55ae6a6438dfe484a14891 {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.MethArray.Green.T C3N-01078 CCRCC Methylation_Array tumor CPT0210950006 203219650156_R07C01_Grn.idat 13676217 IDAT Green NA CPTAC3 b1ae97db-17f0-4c29-ad77-98df204c09ed dfe20bf86ac466dd043d8870c15a09ab {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor"} -C3N-01078.MethArray.Red.A C3N-01078 CCRCC Methylation_Array tissue_normal CPT0210980006 204930640120_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 ffd38a10-5387-4fe7-9746-0e07b721ebb7 cf385b0194c97c970530d3441d4a984a {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.MethArray.Red.T C3N-01078 CCRCC Methylation_Array tumor CPT0210950006 203219650156_R07C01_Red.idat 13676217 IDAT Red NA CPTAC3 f7956131-cbba-4cb1-87f6-7944351bfb35 2bf0294be1dd5e4806ac7a1925175468 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor"} -C3N-01078.miRNA-Seq.A.hg38 C3N-01078 CCRCC miRNA-Seq tissue_normal CPT0210980009 f6ead397-09bd-42a1-8a77-87ca59160446_mirnaseq_gdc_realn.bam 264655061 BAM harmonized CPTAC3 4eef7a37-b95f-476f-a55f-c29958a87e87 d2bf0c9512576aa7aaf6073689fdb37c {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.miRNA-Seq.S13_L003_R1.A C3N-01078 CCRCC miRNA-Seq tissue_normal CPT0210980009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTAGCT_S13_L003_R1_001.unaln.bam 246166082 BAM S13_L003_R1 unaligned CPTAC3 34355f4a-f294-495e-988d-d3a1f307c2d5 c1e34b5a7a242cce1483e3e5893d8626 {"aliquot_tag": "ALQ_9438d578", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.miRNA-Seq.S27_L008_R1.T C3N-01078 CCRCC miRNA-Seq tumor CPT0210950009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L008_R1_001.unaln.bam 223128195 BAM S27_L008_R1 unaligned CPTAC3 456eb8e7-8ffc-48c6-8790-5db4ca485a71 9658499b09e08b21f8468ed89be6251b {"aliquot_tag": "ALQ_6ca811c9", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01078.miRNA-Seq.T.hg38 C3N-01078 CCRCC miRNA-Seq tumor CPT0210950009 8001c1bb-a50d-428f-850c-d54970ba6fca_mirnaseq_gdc_realn.bam 243856594 BAM harmonized CPTAC3 bcd2a430-8862-4fb1-9deb-3ace48947385 1569104ad6b55d6c266052dc584d6708 {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor"} -C3N-01078.RNA-Seq.chimeric.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.chimeric.gdc_realn.bam 64564537 BAM chimeric harmonized CPTAC3 d830279a-06b7-4192-a46f-654142d0b9a4 a24bf84b7578e919adceed1476df9909 {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.RNA-Seq.chimeric.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.chimeric.gdc_realn.bam 294546323 BAM chimeric harmonized CPTAC3 551f723f-6dfb-4835-bbbd-1b32e39545bc d6b46835cffec92c782e602d37c83aee {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor"} -C3N-01078.RNA-Seq.genomic.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.genomic.gdc_realn.bam 7714760138 BAM genomic harmonized CPTAC3 a65497ca-87af-449b-a1a3-004e74bebfbf 107214b30c055b0f66973b7f09eebd00 {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.RNA-Seq.genomic.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.genomic.gdc_realn.bam 7133938771 BAM genomic harmonized CPTAC3 5c3fce88-cb85-4af1-8fc0-fc6f5ee581ee 9fcdbd251adedcaba84acf98982654e9 {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor"} -C3N-01078.RNA-Seq.S14_L004_R1.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R1_001.fastq.gz 3682795915 FASTQ S14_L004_R1 unaligned CPTAC3 5d1dc0e1-abc8-478e-aee3-73e2cb7558a0 a585216cc67a43ceb15f1a4b020bd264 {"aliquot_tag": "ALQ_9438d578", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.RNA-Seq.S14_L004_R2.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R2_001.fastq.gz 4003399707 FASTQ S14_L004_R2 unaligned CPTAC3 b696440c-1e71-45e5-bf40-9c8683bd642f 85fdb56975fbe75aa7462da288861cd7 {"aliquot_tag": "ALQ_9438d578", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.RNA-Seq.S16_L004_R1.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3141262435 FASTQ S16_L004_R1 unaligned CPTAC3 8c91e7bf-c519-4b69-8798-cd10db557252 25dcd8cf984ecd377a3e8f3da82b923b {"aliquot_tag": "ALQ_6ca811c9", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01078.RNA-Seq.S16_L004_R2.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3442927992 FASTQ S16_L004_R2 unaligned CPTAC3 51d973dd-a9df-49e4-ac0d-641eb0816428 ac60558c89575a45e846090fcf27fc33 {"aliquot_tag": "ALQ_6ca811c9", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01078.RNA-Seq.transcriptome.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.transcriptome.gdc_realn.bam 8644156407 BAM transcriptome harmonized CPTAC3 55d90514-e879-4ac7-9de2-e3f98a31f1aa 91352fd5135f60d77de23644c9a600dd {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.RNA-Seq.transcriptome.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.transcriptome.gdc_realn.bam 8153581491 BAM transcriptome harmonized CPTAC3 0fb2ebf2-1ef1-4419-be18-54c05f7c0797 bc39e981779e350551c19cccc268b939 {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor"} -C3N-01078.WGS.N C3N-01078 CCRCC WGS blood_normal CPT0211060002 CPT0211060002.WholeGenome.RP-1303.bam 60127947410 BAM aligned CPTAC3 d94e17fa-7ca7-4869-aab7-c03ed8803501 053fe3968fad4883e6a7e133776b63a1 {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01078.WGS.N.hg38 C3N-01078 CCRCC WGS blood_normal CPT0211060002 39017d3f-1ff1-4601-821b-45d047bc48f5_wgs_gdc_realn.bam 88613823777 BAM harmonized CPTAC3 61b2db31-9677-4e24-a6fc-408b882f26bd e1511b036fb12b3fa5d316f7170aa30a {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01078.WGS.T C3N-01078 CCRCC WGS tumor CPT0210950006 CPT0210950006.WholeGenome.RP-1303.bam 58712936452 BAM aligned CPTAC3 285efe95-18a9-4000-b20a-9042a5277030 1c7869c57d83d9619577fa93b48de087 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor"} -C3N-01078.WGS.T.hg38 C3N-01078 CCRCC WGS tumor CPT0210950006 ef098328-f81b-4559-9de6-2ff6b1080a1a_wgs_gdc_realn.bam 86710820523 BAM harmonized CPTAC3 e81bd015-84a8-4b08-b171-b5f257c3c72d 1b4686ae1d8fef4a848a0b8e00159046 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor"} -C3N-01078.WXS.A C3N-01078 CCRCC WXS tissue_normal CPT0210980006 CPT0210980006.WholeExome.RP-1303.bam 30507112418 BAM aligned CPTAC3 e06ac5b8-ce40-4917-afec-d29531246ce5 117119d336f18470983334e556fa952a {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.WXS.A.hg38 C3N-01078 CCRCC WXS tissue_normal CPT0210980006 6b604d92-77ce-48e6-9d64-cea87480c95a_wxs_gdc_realn.bam 42259010659 BAM harmonized CPTAC3 75bca7f8-7eaa-4269-b142-992ac48bee3e cbd2cfefc2aacea790ddbab2de419b0d {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01078.WXS.N C3N-01078 CCRCC WXS blood_normal CPT0211060002 CPT0211060002.WholeExome.RP-1303.bam 27812299751 BAM aligned CPTAC3 f1b85098-2c20-4092-9245-4944970e36ec d803edd01124f1a6b6d7787dd6dd65ce {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01078.WXS.N.hg38 C3N-01078 CCRCC WXS blood_normal CPT0211060002 39017d3f-1ff1-4601-821b-45d047bc48f5_wxs_gdc_realn.bam 38065946053 BAM harmonized CPTAC3 249b0ae8-3fef-4096-afdd-d253e629ccd7 a15832ce6a872f32cbb389e89259519c {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01078.WXS.T C3N-01078 CCRCC WXS tumor CPT0210950006 CPT0210950006.WholeExome.RP-1303.bam 26713219676 BAM aligned CPTAC3 aabfb651-3964-495f-b886-14d81198ab60 e92b91a31bfb8b331f53c6f51fe6ccf0 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor"} -C3N-01078.WXS.T.hg38 C3N-01078 CCRCC WXS tumor CPT0210950006 ef098328-f81b-4559-9de6-2ff6b1080a1a_wxs_gdc_realn.bam 36410984865 BAM harmonized CPTAC3 7e6e20b2-4d7a-4cd5-9228-08d196ec9432 53896b733004a8cdf4351c0be2ed030b {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor"} -C3N-01079.MethArray.Green.T C3N-01079 UCEC Methylation_Array tumor CPT0211120007 203561620162_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 96d33e2d-ebfd-4b6a-8fd5-137eb4025e95 a8ff23095196f332365a4059b8c8b209 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor"} -C3N-01079.MethArray.Red.T C3N-01079 UCEC Methylation_Array tumor CPT0211120007 203561620162_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 b4490f98-e888-4119-b419-bad1786bf02e 87d8ddf313f4d37f4c7c2e1e128d07f1 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor"} -C3N-01079.miRNA-Seq.S23_L004_R1.T C3N-01079 UCEC miRNA-Seq tumor CPT0211120010 190508_UNC31-K00269_0215_BH7FYKBBXY_GAGTGG_S23_L004_R1_001.unaln.bam 254832821 BAM S23_L004_R1 unaligned CPTAC3 c997f379-64d9-473d-aa75-435be851f2c3 2013b571bfc5e9578f150c0cb129b1b8 {"aliquot_tag": "ALQ_f46bcde5", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01079.miRNA-Seq.T.hg38 C3N-01079 UCEC miRNA-Seq tumor CPT0211120010 9d400e7a-9ff8-4c84-bcbb-e65a1e8e8222_mirnaseq_gdc_realn.bam 292940631 BAM harmonized CPTAC3 2f59f988-d460-439a-a9f3-7a3cb4cda3e8 e03c1ce7484147ae547c174219de57e4 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.chimeric.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.chimeric.gdc_realn.bam 35056149 BAM chimeric harmonized CPTAC3 205c1239-4e79-47e8-a881-38d4519247a7 207010b8eb678a396933d03251ffe271 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.chimeric.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.chimeric.gdc_realn.bam 12828803 BAM chimeric harmonized CPTAC3 69429182-f5ae-4d82-aed4-a7fce320facf 63d7c5e9a532076482911e2c65e59d6a {"aliquot_tag": "ALQ_a2b55ea6", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.genomic.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.genomic.gdc_realn.bam 10306363264 BAM genomic harmonized CPTAC3 8adaa78a-ee74-48fe-8723-a95f0ef0531b 260089723f2d928067f0a5a7ca5a0375 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.genomic.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.genomic.gdc_realn.bam 5679338053 BAM genomic harmonized CPTAC3 ce178419-c649-406a-a64e-cbab68d89a06 8a0c7096254211f9e645668720f8d304 {"aliquot_tag": "ALQ_a2b55ea6", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.S17_L005_R1.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4451240610 FASTQ S17_L005_R1 unaligned CPTAC3 54477041-7f9b-446c-b28f-da855cd3206e 172804c87a0a6d5f08b735041f3af57d {"aliquot_tag": "ALQ_f46bcde5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.S17_L005_R2.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 5104018517 FASTQ S17_L005_R2 unaligned CPTAC3 3c890e56-0f9d-4bc8-bdfb-91f4a3764825 26cf1a8318cc3be189b03a5ace875d18 {"aliquot_tag": "ALQ_f46bcde5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.S70_R1.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R1_001.fastq.gz 2600057148 FASTQ S70_R1 unaligned CPTAC3 f6993c9e-fdb5-4bab-851f-c278fea90818 f08b0286ddda199092a41aceda8bee4d {"aliquot_tag": "ALQ_a2b55ea6", "sample": "S70", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.S70_R2.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R2_001.fastq.gz 2851881484 FASTQ S70_R2 unaligned CPTAC3 4fffb0cc-4f99-42bd-9db7-f332bd495995 2cc90402af969e898c567e48f48fa98d {"aliquot_tag": "ALQ_a2b55ea6", "sample": "S70", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.transcriptome.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.transcriptome.gdc_realn.bam 15789022524 BAM transcriptome harmonized CPTAC3 f23df052-ce85-495c-bbc6-c91a0a634ed9 2fe588d348360a2c9d9a24504cbb3217 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor"} -C3N-01079.RNA-Seq.transcriptome.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.transcriptome.gdc_realn.bam 4173513626 BAM transcriptome harmonized CPTAC3 a981e3ef-dacd-49bd-b037-54ce172a7fb5 acf50e6a0e61e6c484f47ef9e22d1083 {"aliquot_tag": "ALQ_a2b55ea6", "gdc_sample_type": "Primary Tumor"} -C3N-01079.WGS.N C3N-01079 UCEC WGS blood_normal CPT0211240002 CPT0211240002.WholeGenome.RP-1303.bam 85830791142 BAM aligned CPTAC3 e51feaef-7da9-48d4-bfc6-c8d947313b2f 42f5cf8f689be3497fab4902d8129a47 {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01079.WGS.N.hg38 C3N-01079 UCEC WGS blood_normal CPT0211240002 58064c6a-c59b-435e-8f15-b2c4e6f35923_wgs_gdc_realn.bam 128014194117 BAM harmonized CPTAC3 9d32085d-ee83-4029-bdf6-f71aa6dd6219 91b33a92acac59e62f87cce9b62dd368 {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01079.WGS.T C3N-01079 UCEC WGS tumor CPT0211120007 CPT0211120007.WholeGenome.RP-1303.bam 61711677083 BAM aligned CPTAC3 d4eb3abd-7c25-494c-9c9c-35d5d2b0ae12 5f706484bd48b412d0b845f303dbfb0c {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor"} -C3N-01079.WGS.T.hg38 C3N-01079 UCEC WGS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wgs_gdc_realn.bam 88908022934 BAM harmonized CPTAC3 b8eb67c0-024a-408d-b386-4c4805c14fb3 503cba4cdde733249d8c382b496dd5a2 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor"} -C3N-01079.WXS.N C3N-01079 UCEC WXS blood_normal CPT0211240002 CPT0211240002.WholeExome.RP-1303.bam 25180971968 BAM aligned CPTAC3 e706b525-9c80-4d8b-bf90-183528ed823e 8cf5a21799a0ee798ebee093be277a9f {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01079.WXS.N.hg38 C3N-01079 UCEC WXS blood_normal CPT0211240002 58064c6a-c59b-435e-8f15-b2c4e6f35923_wxs_gdc_realn.bam 34106042355 BAM harmonized CPTAC3 d98b711a-fd15-4e01-a94e-7c601b472903 708d29afd54a74657f75ce871de10f8d {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01079.WXS.T C3N-01079 UCEC WXS tumor CPT0211120007 CPT0211120007.WholeExome.RP-1303.bam 23292018621 BAM aligned CPTAC3 6deaf1ce-6405-47e4-9967-cda4828ab11b a2e9339384b45ab1efe21acb3318ed1a {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor"} -C3N-01079.WXS.T.hg38 C3N-01079 UCEC WXS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wxs_gdc_realn.bam 32289014569 BAM harmonized CPTAC3 8e90126a-f7b3-4e3c-be03-9bc5649de5d4 da1ffdb7c7837a94dfffc206405e3064 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor"} -C3N-01080.MethArray.Green.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f524b12a-703c-4bbb-852c-4388a7988fc1 01e9ebee992df49b3e3308cfb01d96c7 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.MethArray.Green.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 500f1bc6-cd94-405b-9414-b70e60484a08 969425da800e3183fd0f01f8a73f47dd {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor"} -C3N-01080.MethArray.Red.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 1234a8af-5e29-4859-ad25-0f53b753ac0d 036d93ef8e5b5f93eb30772086e125ff {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.MethArray.Red.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 9b1a2bb1-8cee-49a7-8931-8a2fbb8eb6f5 83c25f2997d008337ee6ad449c7238c9 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor"} -C3N-01080.miRNA-Seq.A.hg38 C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 18ce9d8b-99ea-4066-881e-30a64794f027_mirnaseq_gdc_realn.bam 168386415 BAM harmonized CPTAC3 78da683a-28d7-429a-b614-8625551df795 0ccf896a6340720e33fe69102668c789 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.miRNA-Seq.S12_L003_R1.A C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L003_R1_001.unaln.bam 152442457 BAM S12_L003_R1 unaligned CPTAC3 d0947c5c-0531-4424-b590-6f3788393d77 b4a2508cb9f338ef87175ea1ce555404 {"aliquot_tag": "ALQ_562410ab", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.miRNA-Seq.S1_L001_R1.T C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L001_R1_001.unaln.bam 161252414 BAM S1_L001_R1 unaligned CPTAC3 b2f6166e-aa30-4aa2-88a7-06fe374083e6 b6335a9878162f607c55f3a106816d4f {"aliquot_tag": "ALQ_d964e50b", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01080.miRNA-Seq.T.hg38 C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 73d6a58d-7d4a-4038-80eb-2375acdff9ef_mirnaseq_gdc_realn.bam 177900370 BAM harmonized CPTAC3 8161e185-b873-4d01-9dfe-d0abe28d3595 d60c963cd9a57a5c6654b0cec9c13a1b {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor"} -C3N-01080.RNA-Seq.chimeric.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.chimeric.gdc_realn.bam 48725042 BAM chimeric harmonized CPTAC3 6f32ed3a-c5a3-40b0-943b-36fb1a9357c4 8e5487f642d63093cb030bcef9ce9af9 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.RNA-Seq.chimeric.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.chimeric.gdc_realn.bam 336260806 BAM chimeric harmonized CPTAC3 5ecd239b-a214-4ba6-854e-cb1250b07a26 69ac964a04219e92fff45843f19e9685 {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor"} -C3N-01080.RNA-Seq.genomic.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.genomic.gdc_realn.bam 7821691328 BAM genomic harmonized CPTAC3 af855c02-5221-48af-b047-83425a7734ee 50792f4b4a5f1f2e95186909fc04b7b2 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.RNA-Seq.genomic.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.genomic.gdc_realn.bam 8637157054 BAM genomic harmonized CPTAC3 965e0238-ebc6-4ea8-9d2c-af257507d8fb 31c1d8c26629b920af765bd8833dd68f {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor"} -C3N-01080.RNA-Seq.S13_L004_R1.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3666040235 FASTQ S13_L004_R1 unaligned CPTAC3 af2bf584-a484-47a1-9943-fcb724e8d988 a536135413a1d2aa709dcfc56ffa1aa8 {"aliquot_tag": "ALQ_562410ab", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.RNA-Seq.S13_L004_R2.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 3958534977 FASTQ S13_L004_R2 unaligned CPTAC3 c29a8380-beb8-44d0-b3df-99baf6f63a44 fc4476bb1c71c3ac60bf982b755546ec {"aliquot_tag": "ALQ_562410ab", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.RNA-Seq.S19_L005_R1.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3829466058 FASTQ S19_L005_R1 unaligned CPTAC3 1b0efbb7-7368-48f5-9055-ab24b5b92b5e 49968cdfa14d7cbd086bfba73c05df8b {"aliquot_tag": "ALQ_d964e50b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01080.RNA-Seq.S19_L005_R2.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3612647989 FASTQ S19_L005_R2 unaligned CPTAC3 af7ab2d9-a4fa-4122-8214-16ca279cb8c3 a36804c8df4694404a6ce3da6205f682 {"aliquot_tag": "ALQ_d964e50b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01080.RNA-Seq.transcriptome.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.transcriptome.gdc_realn.bam 9283029119 BAM transcriptome harmonized CPTAC3 cd3f813c-872d-4916-afca-da4e620449ce 64d8a5071c498d3c5cb9aca6823da8d0 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.RNA-Seq.transcriptome.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.transcriptome.gdc_realn.bam 8774775736 BAM transcriptome harmonized CPTAC3 d012ecc3-59bc-481e-b7fb-e897333f94b7 7e716322e34a1381200eecbaa7d21a20 {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor"} -C3N-01080.WGS.N C3N-01080 CCRCC WGS blood_normal CPT0211420002 CPT0211420002.WholeGenome.RP-1303.bam 57836617097 BAM aligned CPTAC3 e56cc957-a8d5-4a2d-9046-5229f25bb8d3 459e8efb7fe2126b8f1fbfe92599f22a {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01080.WGS.N.hg38 C3N-01080 CCRCC WGS blood_normal CPT0211420002 66196c34-bbe5-404d-8793-db1494f8c66b_wgs_gdc_realn.bam 85377793352 BAM harmonized CPTAC3 32a8def8-5de4-44ba-ae07-944c05931e16 9b8ec3e44fd71e7e85fb3f175896f6a4 {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01080.WGS.T C3N-01080 CCRCC WGS tumor CPT0211320006 CPT0211320006.WholeGenome.RP-1303.bam 71991748739 BAM aligned CPTAC3 8a069d14-7ecf-40e9-be35-5618e948818e 5635e83ddf9a463e0ee9effe0bab489d {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor"} -C3N-01080.WGS.T.hg38 C3N-01080 CCRCC WGS tumor CPT0211320006 ebe8f72f-4900-4bf0-a1ec-b1b1e8c9c727_wgs_gdc_realn.bam 105557370045 BAM harmonized CPTAC3 2b7aea9f-bf40-4e24-87dc-1b62ac2401a7 be00c286a2c2ef9dbbaa2fe5c985e2d9 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor"} -C3N-01080.WXS.A C3N-01080 CCRCC WXS tissue_normal CPT0211340006 CPT0211340006.WholeExome.RP-1303.bam 27820369549 BAM aligned CPTAC3 e453c133-f97a-477a-aebc-0c17cdcd9e1b 3827d7abbaef96454a9a348442fcf1e9 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.WXS.A.hg38 C3N-01080 CCRCC WXS tissue_normal CPT0211340006 df01e2ee-cf2b-498a-8a10-13ac889f7984_wxs_gdc_realn.bam 38665576127 BAM harmonized CPTAC3 fc05a67d-7882-4edf-8d0b-10deb7f4d8ad 25448c8f4291472766e62ac6a2ce6756 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01080.WXS.N C3N-01080 CCRCC WXS blood_normal CPT0211420002 CPT0211420002.WholeExome.RP-1303.bam 29676115168 BAM aligned CPTAC3 1daaf604-418b-4ba3-af3f-4fcd43344569 67f6b7ed5d91ec3a7deb5d6970a3e7ea {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01080.WXS.N.hg38 C3N-01080 CCRCC WXS blood_normal CPT0211420002 66196c34-bbe5-404d-8793-db1494f8c66b_wxs_gdc_realn.bam 40194707885 BAM harmonized CPTAC3 ff79e6b5-8313-42e5-8676-33d34760951d 0fde5994b59e3f9cc124f81c132c4d81 {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01080.WXS.T C3N-01080 CCRCC WXS tumor CPT0211320006 CPT0211320006.WholeExome.RP-1303.bam 18823924614 BAM aligned CPTAC3 018f7eb6-731c-4e24-bbdb-7aac2d231802 b285562a6a55ca6a4f7ce20dc85cb408 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor"} -C3N-01080.WXS.T.hg38 C3N-01080 CCRCC WXS tumor CPT0211320006 ebe8f72f-4900-4bf0-a1ec-b1b1e8c9c727_wxs_gdc_realn.bam 26620228852 BAM harmonized CPTAC3 c9c86de8-6806-4c9b-a0e3-19f90102ca31 9b6c7fa5a69f3a823555c943d9188cb5 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor"} -C3N-01081.MethArray.Green.A C3N-01081 CCRCC Methylation_Array tissue_normal CPT0211520006 204930640065_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b8ac4426-bc6a-4463-bd66-e63047f4a499 a210fca4ffb030fe1737cd4350539451 {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.MethArray.Green.T C3N-01081 CCRCC Methylation_Array tumor CPT0211500006 203271740119_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 40a995b2-d179-4f5d-afe3-305840515b5a 945511761c6856a539f0c26e4f20e989 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01081.MethArray.Red.A C3N-01081 CCRCC Methylation_Array tissue_normal CPT0211520006 204930640065_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 34ef2a30-267c-4276-b23f-2a9020fe17cd b059dc6f4b6d95e570e883cac0346cfa {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.MethArray.Red.T C3N-01081 CCRCC Methylation_Array tumor CPT0211500006 203271740119_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 73004f69-3360-4f9d-90dd-2a76038201d6 730b278c8833c9d90f56a92c046408a8 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01081.miRNA-Seq.A.hg38 C3N-01081 CCRCC miRNA-Seq tissue_normal CPT0211520009 5f6d21d9-75ca-4759-a6f1-5cd728f9b856_mirnaseq_gdc_realn.bam 271158565 BAM harmonized CPTAC3 d6f71cb6-d957-4b58-8bc2-91b3f2c33c50 9b8163869ae4d9a3bfe5f78499bcc56d {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.miRNA-Seq.S11_L003_R1.A C3N-01081 CCRCC miRNA-Seq tissue_normal CPT0211520009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTCAGA_S11_L003_R1_001.unaln.bam 248505451 BAM S11_L003_R1 unaligned CPTAC3 9684f524-f208-4a16-9bdd-4fedc05e8bb4 85b2ba1d769ab5b8509b828ffbd1d424 {"aliquot_tag": "ALQ_f3d0616", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.miRNA-Seq.S26_L002_R1.T C3N-01081 CCRCC miRNA-Seq tumor CPT0211500009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGTAGC_S26_L002_R1_001.unaln.bam 294930222 BAM S26_L002_R1 unaligned CPTAC3 3451ff46-b65a-49af-9d41-d6b60b18455d 33d25276a97bf99e1ba75886f6f8f877 {"aliquot_tag": "ALQ_75fd5576", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01081.miRNA-Seq.T.hg38 C3N-01081 CCRCC miRNA-Seq tumor CPT0211500009 9ce1fc0a-7325-458e-b820-a910196c1a40_mirnaseq_gdc_realn.bam 321075910 BAM harmonized CPTAC3 7cc077ec-c95b-4b47-aa3c-69fb02ed9f02 019ce8774c4fa3a3afce53bf45387dbd {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor"} -C3N-01081.RNA-Seq.chimeric.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.chimeric.gdc_realn.bam 45202239 BAM chimeric harmonized CPTAC3 8110fa83-039a-4994-95ac-1050d4d24bee 86fa59aacbec50a9a93fcaab46711094 {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.RNA-Seq.chimeric.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.chimeric.gdc_realn.bam 112390601 BAM chimeric harmonized CPTAC3 fbb0943b-f81f-446a-8244-217a67b8bd3a 2e71f80715636ed87d1d0c548f935c74 {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor"} -C3N-01081.RNA-Seq.genomic.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.genomic.gdc_realn.bam 8913352721 BAM genomic harmonized CPTAC3 b3ca2641-5c6d-4593-ab69-de2304a3b72a b645901121f95981af3d3a9fd5b14292 {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.RNA-Seq.genomic.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.genomic.gdc_realn.bam 9212493991 BAM genomic harmonized CPTAC3 4b81215d-21f8-40c9-ac75-f8c1f3fde6b6 8bb79d64fe6ae62d4af8bb14b9081b25 {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor"} -C3N-01081.RNA-Seq.S16_L004_R1.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R1_001.fastq.gz 4110484031 FASTQ S16_L004_R1 unaligned CPTAC3 c096803d-1211-4ff6-9789-363c78938d50 e89b9a427be7af652412cc82c8724fba {"aliquot_tag": "ALQ_f3d0616", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.RNA-Seq.S16_L004_R2.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R2_001.fastq.gz 4001855477 FASTQ S16_L004_R2 unaligned CPTAC3 41f22f79-9720-42e3-ba7e-396f98675542 cfa2ebb7a58bec4f171238e29d2f47a6 {"aliquot_tag": "ALQ_f3d0616", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.RNA-Seq.S4_L007_R1.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 3996736881 FASTQ S4_L007_R1 unaligned CPTAC3 92e0b24e-3a04-4bce-9f43-d9abe7b03953 026da4fab9bb8a3258be1cf23fd76579 {"aliquot_tag": "ALQ_75fd5576", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01081.RNA-Seq.S4_L007_R2.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4406408914 FASTQ S4_L007_R2 unaligned CPTAC3 52994f4c-cc76-44a6-a732-0c3f6aa8bc85 ffc1772ad781e2d174f928641ad037e9 {"aliquot_tag": "ALQ_75fd5576", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01081.RNA-Seq.transcriptome.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.transcriptome.gdc_realn.bam 9124929678 BAM transcriptome harmonized CPTAC3 5ac410a6-2956-42e1-b354-208d3c1b4434 4334510897eb3bc9981badfb670dd9c2 {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.RNA-Seq.transcriptome.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.transcriptome.gdc_realn.bam 9313350035 BAM transcriptome harmonized CPTAC3 30c29831-b74a-490b-bbd5-d6f52a42339d 1c76fae12a0e326ab37d02d337d24012 {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor"} -C3N-01081.WGS.N C3N-01081 CCRCC WGS blood_normal CPT0211600002 CPT0211600002.WholeGenome.RP-1303.bam 49737781821 BAM aligned CPTAC3 cde3b374-2a72-43b9-bf88-a4b1134ab056 3e8db787a0c4e0f88959ec4dc8b56199 {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01081.WGS.N.hg38 C3N-01081 CCRCC WGS blood_normal CPT0211600002 05e6699a-46ac-41e6-bac6-19c1138d4636_wgs_gdc_realn.bam 73794382846 BAM harmonized CPTAC3 3b05533b-8d12-4eed-b3ac-9a33d860340d 1104db018fd32d2cc9960025d0dcb67e {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01081.WGS.T C3N-01081 CCRCC WGS tumor CPT0211500006 CPT0211500006.WholeGenome.RP-1303.bam 62249511619 BAM aligned CPTAC3 d5c17ad3-a178-446e-84be-cda12dfd0e17 5f18c1e2a256db452230c8057ad4caa4 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01081.WGS.T C3N-01081 CCRCC WGS tumor CPT0211500006 CPT0211500006.WholeGenome.RP-2158.bam 21078135651 BAM aligned CPTAC3 07ff5254-4f83-4306-b657-5b2e0c0dda3b f502c3675022fc0070dd8cb4932ba9da {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01081.WGS.T.hg38 C3N-01081 CCRCC WGS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wgs_gdc_realn.bam 155131738524 BAM harmonized CPTAC3 337fa121-24be-47ee-bb31-4e7f0338e1e6 ee3991d028912f5793b299f52c396cca {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01081.WGS.T.hg38 C3N-01081 CCRCC WGS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wgs_gdc_realn.bam 88840459680 BAM harmonized CPTAC3 7c17d033-fe1b-43ca-ac52-78cbe64b9cab 6c9d7b26a6c6cc8e674109b5cfd8a3b9 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01081.WXS.A C3N-01081 CCRCC WXS tissue_normal CPT0211520006 CPT0211520006.WholeExome.RP-1303.bam 22660728697 BAM aligned CPTAC3 a9cffd30-089b-46dd-ba07-bc07c9eb8491 9862f307df0922c27c2560c21f6dd89f {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.WXS.A.hg38 C3N-01081 CCRCC WXS tissue_normal CPT0211520006 15e271d7-eeb1-458a-99ae-f0230f4646d2_wxs_gdc_realn.bam 30785130706 BAM harmonized CPTAC3 8286e58d-3bbe-47a9-a6ef-b515892beac8 b9854ac8dab638a3c886ecae902dc645 {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01081.WXS.N C3N-01081 CCRCC WXS blood_normal CPT0211600002 CPT0211600002.WholeExome.RP-1303.bam 30529847256 BAM aligned CPTAC3 9555ec07-d984-491d-9111-73f39e697182 46792b71a59828c7102c4a8007b51d9c {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01081.WXS.N.hg38 C3N-01081 CCRCC WXS blood_normal CPT0211600002 05e6699a-46ac-41e6-bac6-19c1138d4636_wxs_gdc_realn.bam 41939011400 BAM harmonized CPTAC3 70984b24-8023-4db5-a258-288272b5c8d7 17500637b300bf2192ffd3a90a33a266 {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01081.WXS.T C3N-01081 CCRCC WXS tumor CPT0211500006 CPT0211500006.WholeExome.RP-1303.bam 30082446956 BAM aligned CPTAC3 7ea89db4-cc8f-4499-b831-48a58004fa2e 5ba18b3e534602deec6cde5fb189c0a1 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01081.WXS.T.hg38 C3N-01081 CCRCC WXS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wxs_gdc_realn.bam 41240890995 BAM harmonized CPTAC3 aea7f0fb-6979-48a4-a9e1-90387dd30331 2a1c1e213df71a08b56e4b98eb0533c0 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor"} -C3N-01082.MethArray.Green.A C3N-01082 CCRCC Methylation_Array tissue_normal CPT0211700006 204930640051_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 84529527-7768-4e74-ac97-a4c7cb05f9ba fa8ee0f55f74a8a28e255d7c21c123ea {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.MethArray.Green.T C3N-01082 CCRCC Methylation_Array tumor CPT0211680006 203219670150_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 46b1edf4-4937-4370-9296-febf50f74ea0 7293bd1126fd8df9725dbc55492cf99e {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor"} -C3N-01082.MethArray.Red.A C3N-01082 CCRCC Methylation_Array tissue_normal CPT0211700006 204930640051_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 0d7ed8ad-1968-4db4-b77d-e8ffd28d0b5c 2d9a7d1c88c44cb71e2902e16149d45f {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.MethArray.Red.T C3N-01082 CCRCC Methylation_Array tumor CPT0211680006 203219670150_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 d42c9cae-3a20-4730-b7cb-f0c85a8fa419 7a381a055c23a332d2277854c8bbd43b {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor"} -C3N-01082.miRNA-Seq.A.hg38 C3N-01082 CCRCC miRNA-Seq tissue_normal CPT0211700009 84ce8f2b-8dd9-435b-9888-baace6bd1649_mirnaseq_gdc_realn.bam 218037366 BAM harmonized CPTAC3 48d2c776-8d9a-4e2c-9be8-c4ac1e74a772 d87e1713f9b2c0b1b0cd40a78da14e7d {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.miRNA-Seq.S10_L003_R1.A C3N-01082 CCRCC miRNA-Seq tissue_normal CPT0211700009 190206_UNC31-K00269_0191_AH2WY5BBXY_GACGAC_S10_L003_R1_001.unaln.bam 200829131 BAM S10_L003_R1 unaligned CPTAC3 ff04c7e5-de58-4a81-8aa5-01c08a5ce7cf 536e54f852e48030eee28f6a53a9b18f {"aliquot_tag": "ALQ_3835f47d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.miRNA-Seq.S2_L001_R1.T C3N-01082 CCRCC miRNA-Seq tumor CPT0211680009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L001_R1_001.unaln.bam 157805673 BAM S2_L001_R1 unaligned CPTAC3 d03bff6b-e061-4f92-9a82-72966ced4031 7a2ce55313e86b41e64e29554821c76f {"aliquot_tag": "ALQ_c3196c19", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01082.miRNA-Seq.T.hg38 C3N-01082 CCRCC miRNA-Seq tumor CPT0211680009 58adfa5b-033f-4dce-9002-ed76c2894859_mirnaseq_gdc_realn.bam 170978644 BAM harmonized CPTAC3 11ef1da4-0930-4d0c-ad22-81d23c163f21 50e965c626e0a0705578860378c78c66 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor"} -C3N-01082.RNA-Seq.chimeric.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.chimeric.gdc_realn.bam 57444253 BAM chimeric harmonized CPTAC3 f8109f1a-1ea8-4901-b3ac-1ad60badcf51 acc280053dc4006163027a55256a6cca {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.RNA-Seq.chimeric.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.chimeric.gdc_realn.bam 274225612 BAM chimeric harmonized CPTAC3 a15ac72b-7dc3-4c04-bdb0-33ec70fa74f2 09ce115ebff584c8f25ec6a29dc78109 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor"} -C3N-01082.RNA-Seq.genomic.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.genomic.gdc_realn.bam 11575972623 BAM genomic harmonized CPTAC3 1fcea42a-bbeb-4aa7-8aa1-2bab1d148373 650374fab7ed327e667a9caeea27b427 {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.RNA-Seq.genomic.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.genomic.gdc_realn.bam 6985800333 BAM genomic harmonized CPTAC3 977e48d7-a331-4f66-8ef6-72dcea3a516e 9fee51e586f779cf2ee757ec1a085841 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor"} -C3N-01082.RNA-Seq.S18_L005_R1.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3139277370 FASTQ S18_L005_R1 unaligned CPTAC3 4843ac3c-7ff4-4b51-9c10-796827bd15f5 5714c1195fd016bb516c22bd24fc5884 {"aliquot_tag": "ALQ_c3196c19", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01082.RNA-Seq.S18_L005_R2.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3334223376 FASTQ S18_L005_R2 unaligned CPTAC3 3ebde143-6c0a-474e-8d54-cb149cdd5a2e caab69140cf3453d14d5809b4e94d870 {"aliquot_tag": "ALQ_c3196c19", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01082.RNA-Seq.S3_L005_R1.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R1_001.fastq.gz 5571935814 FASTQ S3_L005_R1 unaligned CPTAC3 2754e1db-72ff-4296-930c-a14dcae963e4 a52baf2db4802302bab2eeb6ea8db1ff {"aliquot_tag": "ALQ_3835f47d", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.RNA-Seq.S3_L005_R2.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R2_001.fastq.gz 6102461447 FASTQ S3_L005_R2 unaligned CPTAC3 57e38ac6-2520-4c34-9158-9ce202821d6d 5e8079213872e5221be63e07dfc11ae1 {"aliquot_tag": "ALQ_3835f47d", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.RNA-Seq.transcriptome.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.transcriptome.gdc_realn.bam 15191498796 BAM transcriptome harmonized CPTAC3 19be275f-b951-4230-ba30-41c0726ce07e b8dfd0f1eacfb725af914f0fabe793fe {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.RNA-Seq.transcriptome.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.transcriptome.gdc_realn.bam 8550318272 BAM transcriptome harmonized CPTAC3 de4ed059-2371-4f8a-bd2f-6f114dd5bf46 2d4abe9e7b11e2f1b4504a556ee7cde0 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor"} -C3N-01082.WGS.N C3N-01082 CCRCC WGS blood_normal CPT0211780002 CPT0211780002.WholeGenome.RP-1303.bam 78259968806 BAM aligned CPTAC3 8383f338-dd01-4c0a-bfa8-cb40606dc877 ee456a76e6c8351810f6ce49349e1f7a {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal"} -C3N-01082.WGS.N.hg38 C3N-01082 CCRCC WGS blood_normal CPT0211780002 5aa47d8e-1a69-4295-92a2-c4b686860c17_wgs_gdc_realn.bam 114860618076 BAM harmonized CPTAC3 126b4110-04ef-4865-8609-8f0594577538 7e7ede475a89a1ab820d3222c0d7c2d0 {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal"} -C3N-01082.WGS.T C3N-01082 CCRCC WGS tumor CPT0211680006 CPT0211680006.WholeGenome.RP-1303.bam 52755891542 BAM aligned CPTAC3 3dadac4e-194b-467d-9853-f17447d1ad1c b9a439197e6e6070539a7442fd126fc1 {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor"} -C3N-01082.WGS.T.hg38 C3N-01082 CCRCC WGS tumor CPT0211680006 6abb6a62-72f7-4b24-9e60-787c04565777_wgs_gdc_realn.bam 76183867987 BAM harmonized CPTAC3 dbc074c8-6893-457b-ad65-6239fdccdd08 6226591bbbef18a1fbbcbc1ed002cbf5 {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor"} -C3N-01082.WXS.A C3N-01082 CCRCC WXS tissue_normal CPT0211700006 CPT0211700006.WholeExome.RP-1303.bam 18988568325 BAM aligned CPTAC3 4a271983-21be-4d93-aa6a-4d4480e944ca 514d688739d5175a74b47754f41c8a6c {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.WXS.A.hg38 C3N-01082 CCRCC WXS tissue_normal CPT0211700006 b4222b72-97ba-40b9-9b01-0e0c245f164d_wxs_gdc_realn.bam 26627785670 BAM harmonized CPTAC3 a87ae380-49bb-4880-80b4-c9ea1906f4ac aa105ac0a4fad86cdc8699ebaa265f19 {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01082.WXS.N C3N-01082 CCRCC WXS blood_normal CPT0211780002 CPT0211780002.WholeExome.RP-1303.bam 19162398500 BAM aligned CPTAC3 6d7077e4-6eb7-470e-9eb5-367d18224bf3 d55d7387570760f5640588b9d97685dd {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal"} -C3N-01082.WXS.N.hg38 C3N-01082 CCRCC WXS blood_normal CPT0211780002 5aa47d8e-1a69-4295-92a2-c4b686860c17_wxs_gdc_realn.bam 27474497734 BAM harmonized CPTAC3 9a6c539f-477a-4738-8091-6100da74c2ff 99c37d3a1a505a910d7d29200ddc55aa {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal"} -C3N-01082.WXS.T C3N-01082 CCRCC WXS tumor CPT0211680006 CPT0211680006.WholeExome.RP-1303.bam 28461391446 BAM aligned CPTAC3 96f4737d-3ee7-4229-921a-0a14a5cb10b3 02c0dc5e1c55a0589e2b8c98b79a5492 {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor"} -C3N-01082.WXS.T.hg38 C3N-01082 CCRCC WXS tumor CPT0211680006 6abb6a62-72f7-4b24-9e60-787c04565777_wxs_gdc_realn.bam 39162049352 BAM harmonized CPTAC3 5c8d9e13-8a17-434b-b14d-dc6d55cbf890 ece194a183f2f3de61650ee0968db54a {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor"} -C3N-01083.MethArray.Green.A C3N-01083 CCRCC Methylation_Array tissue_normal CPT0211880006 204930640108_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 31b53fd9-8b42-41ac-9ef3-54efb6c1730d c066b76c3f2191ffa58ff035e8b9d09c {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.MethArray.Green.T C3N-01083 CCRCC Methylation_Array tumor CPT0211850006 203271740111_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c2126d86-fc9e-4df6-ad1c-2356e9c7d845 084d737301182e17ff6d96aa5c9f3214 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor"} -C3N-01083.MethArray.Red.A C3N-01083 CCRCC Methylation_Array tissue_normal CPT0211880006 204930640108_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 a3f3afe7-dd94-43fa-8fc5-c7069feac76a 3ff373aee69a3da47b3f00416900dced {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.MethArray.Red.T C3N-01083 CCRCC Methylation_Array tumor CPT0211850006 203271740111_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 9701f000-e90a-400f-b822-6a861736b613 d5e713d4240b7ae63805607305902cf5 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor"} -C3N-01083.miRNA-Seq.A.hg38 C3N-01083 CCRCC miRNA-Seq tissue_normal CPT0211880009 0a5a900b-435e-472c-8cdb-9641243d80ae_mirnaseq_gdc_realn.bam 189129134 BAM harmonized CPTAC3 61210e7b-0102-476a-b348-76d840e2180d 6a11d09551366d6b6cea761c37bcd27b {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.miRNA-Seq.S24_L001_R1.T C3N-01083 CCRCC miRNA-Seq tumor CPT0211850009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATTCCT_S24_L001_R1_001.unaln.bam 242398485 BAM S24_L001_R1 unaligned CPTAC3 e743e0ca-610a-4be7-845d-eda12bd9fc00 d41b40f4421e74ba6cc488ff176d67fd {"aliquot_tag": "ALQ_183c9d8", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01083.miRNA-Seq.S9_L003_R1.A C3N-01083 CCRCC miRNA-Seq tissue_normal CPT0211880009 190206_UNC31-K00269_0191_AH2WY5BBXY_TAATCG_S9_L003_R1_001.unaln.bam 173504791 BAM S9_L003_R1 unaligned CPTAC3 02bcc0c9-5df9-4548-8a43-77905dcddd33 f6d9538414519dd7bd58a5814e8709bd {"aliquot_tag": "ALQ_f9130d69", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.miRNA-Seq.T.hg38 C3N-01083 CCRCC miRNA-Seq tumor CPT0211850009 57c9dd9a-30bc-49d8-8ba8-aea243bf6e46_mirnaseq_gdc_realn.bam 266600403 BAM harmonized CPTAC3 f1a1f788-fc1a-4117-9253-b1992a0df8af e14a277cf12a638fe60b77a53043ce17 {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor"} -C3N-01083.RNA-Seq.chimeric.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.chimeric.gdc_realn.bam 32818934 BAM chimeric harmonized CPTAC3 48f0dfd2-23e3-40b5-ad6f-f4579c35e8b0 6b470c7947f42e0f103e8a782b15002b {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.RNA-Seq.chimeric.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.chimeric.gdc_realn.bam 243856773 BAM chimeric harmonized CPTAC3 67f0e29b-0cb6-4c63-9eb7-9152edeb5b32 5b6bca480be59518625bf49f11c4ec73 {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor"} -C3N-01083.RNA-Seq.genomic.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.genomic.gdc_realn.bam 7387170692 BAM genomic harmonized CPTAC3 99f7cc5a-aa02-434c-9628-1c69fe73b2c3 d382fe7b5c8059d82d849c199ba09c79 {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.RNA-Seq.genomic.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.genomic.gdc_realn.bam 6459291032 BAM genomic harmonized CPTAC3 21a8dd1d-8468-47fe-ab0e-14ed4a7550cf 102a058ecea3783f807c861bbfe924cc {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor"} -C3N-01083.RNA-Seq.S17_L005_R1.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2749665019 FASTQ S17_L005_R1 unaligned CPTAC3 b9bc12dd-b11a-47af-a68b-b3ba1a8b660c a6b7fc5544a50ff97000cccd6f5c01f6 {"aliquot_tag": "ALQ_183c9d8", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01083.RNA-Seq.S17_L005_R2.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 2940592823 FASTQ S17_L005_R2 unaligned CPTAC3 1ce0132c-de61-4591-81a6-3eb7f6db53e7 1ad734b8bc95bc41c3dafba8b42602ce {"aliquot_tag": "ALQ_183c9d8", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01083.RNA-Seq.S2_L005_R1.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R1_001.fastq.gz 3459021809 FASTQ S2_L005_R1 unaligned CPTAC3 7dd921a9-9aa7-4f97-8309-c498cc9ea467 21f8a1d72a080c939423e80fbc58219c {"aliquot_tag": "ALQ_f9130d69", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.RNA-Seq.S2_L005_R2.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R2_001.fastq.gz 3403075435 FASTQ S2_L005_R2 unaligned CPTAC3 304830a4-c6dc-480d-9183-eb79fc6a2111 d639563d622c3eacbe0e31e0c66f2fd7 {"aliquot_tag": "ALQ_f9130d69", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.RNA-Seq.transcriptome.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.transcriptome.gdc_realn.bam 8484376806 BAM transcriptome harmonized CPTAC3 4bf91909-d1b4-4a75-9226-5a114bd7045b 32afb8e485265e63c677cfa9ead66d92 {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.RNA-Seq.transcriptome.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.transcriptome.gdc_realn.bam 7624292200 BAM transcriptome harmonized CPTAC3 f1dc6799-6a0d-41ad-88f7-32010cb678ad b686a85459d793bf6cda77d27aa36586 {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor"} -C3N-01083.WGS.N C3N-01083 CCRCC WGS blood_normal CPT0211960002 CPT0211960002.WholeGenome.RP-1303.bam 55433493128 BAM aligned CPTAC3 d5c7e4f6-73a2-47db-bda5-53b3bbac47ea 749789f6104577b7b5d2ab2ca71eb158 {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01083.WGS.N.hg38 C3N-01083 CCRCC WGS blood_normal CPT0211960002 61676e90-2ece-4098-9798-07f5a2357b7d_wgs_gdc_realn.bam 80670204882 BAM harmonized CPTAC3 35f4edfd-953d-4f8b-81e6-5c17288d14b1 6dfc38c04a630080e852ad97e8f18dc2 {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01083.WGS.T C3N-01083 CCRCC WGS tumor CPT0211850006 CPT0211850006.WholeGenome.RP-1303.bam 57145565058 BAM aligned CPTAC3 5b683651-6bbf-4669-95d3-7fc2079503ec d343597745e0fd153c56dc1f9a2c9063 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor"} -C3N-01083.WGS.T.hg38 C3N-01083 CCRCC WGS tumor CPT0211850006 cb16c4da-b3ec-4b40-9b71-a5d1be6c03a3_wgs_gdc_realn.bam 83958881153 BAM harmonized CPTAC3 b0664abf-9a28-4da9-9b8b-c8d628467c79 72461f146950ce6a0d18fa84141d55d0 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor"} -C3N-01083.WXS.A C3N-01083 CCRCC WXS tissue_normal CPT0211880006 CPT0211880006.WholeExome.RP-1303.bam 17591413595 BAM aligned CPTAC3 6aa4e783-1c09-4965-8184-6b8b9fd48d57 b290449afc03d783124bbaf2ca44d22e {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.WXS.A.hg38 C3N-01083 CCRCC WXS tissue_normal CPT0211880006 b7cb41e7-ec2f-4634-b9ba-9b27420a7565_wxs_gdc_realn.bam 24626675587 BAM harmonized CPTAC3 7156eadf-1e5e-4973-8f39-854f8e292841 ea0b85f551f1e4752d836e5dae55f1bd {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01083.WXS.N C3N-01083 CCRCC WXS blood_normal CPT0211960002 CPT0211960002.WholeExome.RP-1303.bam 29994231825 BAM aligned CPTAC3 fd7d48bf-4202-46ee-923c-3db580b2bd76 26e73e13f9e78f693410f23c6e4ae1fa {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01083.WXS.N.hg38 C3N-01083 CCRCC WXS blood_normal CPT0211960002 61676e90-2ece-4098-9798-07f5a2357b7d_wxs_gdc_realn.bam 41142568288 BAM harmonized CPTAC3 d5c346e9-a9d4-48c8-b1cb-cf84369680a8 b575e7bd0523fba765b1854cf4e099f3 {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01083.WXS.T C3N-01083 CCRCC WXS tumor CPT0211850006 CPT0211850006.WholeExome.RP-1303.bam 24548227460 BAM aligned CPTAC3 03481f54-9ca0-4702-8680-dfb7a17e5f07 9365fadd240b9e2e20f24a9aefb30ced {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor"} -C3N-01083.WXS.T.hg38 C3N-01083 CCRCC WXS tumor CPT0211850006 cb16c4da-b3ec-4b40-9b71-a5d1be6c03a3_wxs_gdc_realn.bam 33907273806 BAM harmonized CPTAC3 0c017e19-803f-445a-8068-bb43d457b9fd 35394d7bda8940086c81f2bf303c9f7f {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor"} -C3N-01085.MethArray.Green.A C3N-01085 CCRCC Methylation_Array tissue_normal CPT0212240006 204930640061_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 240778ae-8477-4f38-b79a-d06a7ed25ee7 7fb22cbf09653388d8eca03bc5c2128c {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.MethArray.Green.T C3N-01085 CCRCC Methylation_Array tumor CPT0212210006 203219650127_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b15c208c-fc27-41b4-bd38-f80f79eabbc7 7e6228b938c5859ad84117602c1d45a5 {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor"} -C3N-01085.MethArray.Red.A C3N-01085 CCRCC Methylation_Array tissue_normal CPT0212240006 204930640061_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 91d266cc-c11b-4e97-aa7d-19923270a658 654425c062a404ee7a8103fc156a6356 {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.MethArray.Red.T C3N-01085 CCRCC Methylation_Array tumor CPT0212210006 203219650127_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 5bdb194e-52a6-4711-bdc6-49eee02aab80 a42189921879c5a4e63efde5077a907b {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor"} -C3N-01085.miRNA-Seq.A.hg38 C3N-01085 CCRCC miRNA-Seq tissue_normal CPT0212240009 4f146110-d652-40c3-a26f-1b500b70a2ab_mirnaseq_gdc_realn.bam 176491029 BAM harmonized CPTAC3 72d34cc1-0aa7-453e-b4af-0fa6c4bb1134 b1b7cd2aba50595401039aebd7946d73 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.miRNA-Seq.S23_L001_R1.T C3N-01085 CCRCC miRNA-Seq tumor CPT0212210009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAAAAG_S23_L001_R1_001.unaln.bam 227694911 BAM S23_L001_R1 unaligned CPTAC3 13fd13ac-5161-44d9-8b5a-f6f26e7e6a40 dcd5332ccd3e276b360198383b3b0cb9 {"aliquot_tag": "ALQ_647056e3", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01085.miRNA-Seq.S8_L003_R1.A C3N-01085 CCRCC miRNA-Seq tissue_normal CPT0212240009 190206_UNC31-K00269_0191_AH2WY5BBXY_TACAGC_S8_L003_R1_001.unaln.bam 161075679 BAM S8_L003_R1 unaligned CPTAC3 fbe89446-f3b4-45fe-b65f-ef175a34c4cb 06005365d919abfc55ca08163e425258 {"aliquot_tag": "ALQ_ac90d993", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.miRNA-Seq.T.hg38 C3N-01085 CCRCC miRNA-Seq tumor CPT0212210009 c52b5677-535e-4000-a534-58a0a32bd7c7_mirnaseq_gdc_realn.bam 250608573 BAM harmonized CPTAC3 87a729a9-f581-4c5e-a3c0-251ea53710d9 cba3dcc5b532d011d21e785564ff0fe3 {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor"} -C3N-01085.RNA-Seq.chimeric.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.chimeric.gdc_realn.bam 36291074 BAM chimeric harmonized CPTAC3 fa13fa79-d2c1-431f-8c6e-06a07bb0821e 2af2f4bf5abb29a6726581121386a925 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.RNA-Seq.chimeric.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.chimeric.gdc_realn.bam 285107022 BAM chimeric harmonized CPTAC3 f08d30c8-e951-4ecf-a59e-d08fc24ee33c 3faebb17446edd0b0af55c19b0bb4a03 {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor"} -C3N-01085.RNA-Seq.genomic.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.genomic.gdc_realn.bam 8761229049 BAM genomic harmonized CPTAC3 7a566ffb-01be-482b-89b8-62283d6c6478 8f41762ac2d5c467757b3fe1854f6a23 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.RNA-Seq.genomic.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.genomic.gdc_realn.bam 6035087191 BAM genomic harmonized CPTAC3 000812b7-592a-4dcd-abd6-17d7f4a37089 71b5797865e63fffa5c4877917ed9ade {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor"} -C3N-01085.RNA-Seq.S1_L005_R1.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R1_001.fastq.gz 3864947344 FASTQ S1_L005_R1 unaligned CPTAC3 1009564e-d748-4f17-9948-d10aa72471ec 66222d6b354e253c4adf20f0b1751bb4 {"aliquot_tag": "ALQ_ac90d993", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.RNA-Seq.S1_L005_R2.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R2_001.fastq.gz 4137290608 FASTQ S1_L005_R2 unaligned CPTAC3 2adaedce-781e-4a43-ba97-53e645f5634d 4e7f4f83934c5e24afa61c0c658f2e2b {"aliquot_tag": "ALQ_ac90d993", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.RNA-Seq.S20_L005_R1.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R1_001.fastq.gz 2683352550 FASTQ S20_L005_R1 unaligned CPTAC3 1b035c9f-01cb-4c83-845a-7e5b6eafebdd 9bfe476acc01062cfda36f03eb933d23 {"aliquot_tag": "ALQ_647056e3", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01085.RNA-Seq.S20_L005_R2.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R2_001.fastq.gz 2785346721 FASTQ S20_L005_R2 unaligned CPTAC3 b391a168-fd51-4373-8eea-a3d4500e89ea 5f716a3973746c517678da117577c7c0 {"aliquot_tag": "ALQ_647056e3", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01085.RNA-Seq.transcriptome.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.transcriptome.gdc_realn.bam 8660626096 BAM transcriptome harmonized CPTAC3 26b4c92e-28a5-411f-aa13-7cf12136ae43 b039a044c47bd118b66fbccda844e1c5 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.RNA-Seq.transcriptome.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.transcriptome.gdc_realn.bam 6921361338 BAM transcriptome harmonized CPTAC3 5a97845e-43e8-4114-b792-3d6d97cba79e fe2302383a5817d7339b7f3b33630033 {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor"} -C3N-01085.WGS.N C3N-01085 CCRCC WGS blood_normal CPT0212320002 CPT0212320002.WholeGenome.RP-1303.bam 88217023350 BAM aligned CPTAC3 43a3ca27-112f-4cd7-83eb-f505c632f9cf 7a7c794450531ca08ba00071c811ade8 {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01085.WGS.N.hg38 C3N-01085 CCRCC WGS blood_normal CPT0212320002 8cdd183e-b85b-4469-8c57-d4f836843094_wgs_gdc_realn.bam 127091492849 BAM harmonized CPTAC3 e4c3ec04-3071-4167-9a20-2df72f78f84d 2a9b7106d46ffaddb54b8ebcd5d95cd0 {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01085.WGS.T C3N-01085 CCRCC WGS tumor CPT0212210006 CPT0212210006.WholeGenome.RP-1303.bam 58539445716 BAM aligned CPTAC3 7d628f1d-4b30-439d-b947-0358151aaf0e 0cceb995b4e1e9093ecd9496095d4e64 {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor"} -C3N-01085.WGS.T.hg38 C3N-01085 CCRCC WGS tumor CPT0212210006 79633993-7e7d-44f6-9209-ed67c5c43528_wgs_gdc_realn.bam 85224647356 BAM harmonized CPTAC3 d163e312-910a-4b38-bf44-58070356b730 c32d4c367c056dbc424056d506207a2a {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor"} -C3N-01085.WXS.A C3N-01085 CCRCC WXS tissue_normal CPT0212240006 CPT0212240006.WholeExome.RP-1303.bam 16680536293 BAM aligned CPTAC3 fe57466b-db95-409e-b1b9-bb94c930cc3b fbdf499844726f55efb80db5925ccc88 {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.WXS.A.hg38 C3N-01085 CCRCC WXS tissue_normal CPT0212240006 184bd502-46d4-4031-bf16-f7f520ab9433_wxs_gdc_realn.bam 23567433371 BAM harmonized CPTAC3 05704de4-e7ef-4f0e-9c84-e7cd9d563d8b da282a72b8a21271c39bb05344fd24fe {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01085.WXS.N C3N-01085 CCRCC WXS blood_normal CPT0212320002 CPT0212320002.WholeExome.RP-1303.bam 29172907805 BAM aligned CPTAC3 207c63be-2973-463f-aa00-d4a9ce091f11 10feaf960dbe2f76770aa1c2fc483f65 {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01085.WXS.N.hg38 C3N-01085 CCRCC WXS blood_normal CPT0212320002 8cdd183e-b85b-4469-8c57-d4f836843094_wxs_gdc_realn.bam 39838816573 BAM harmonized CPTAC3 2682849b-94f8-4522-b0b0-c722d5c64174 e0e5356565a8c4f2f4aa1833c7ce336e {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01085.WXS.T C3N-01085 CCRCC WXS tumor CPT0212210006 CPT0212210006.WholeExome.RP-1303.bam 25507551368 BAM aligned CPTAC3 9849c47d-781f-464b-b423-576f3e84780b ef42838c16c838f9d0a3179bf7889d5a {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor"} -C3N-01085.WXS.T.hg38 C3N-01085 CCRCC WXS tumor CPT0212210006 79633993-7e7d-44f6-9209-ed67c5c43528_wxs_gdc_realn.bam 35863934611 BAM harmonized CPTAC3 dd1626be-3ae1-4c42-8cce-79c183507854 f47a25d0672867c12d8e57cbd551973e {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor"} -C3N-01086.MethArray.Green.A C3N-01086 CCRCC Methylation_Array tissue_normal CPT0212420006 204930640051_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7248b4b2-d907-4b0e-9618-359a81bf9d38 31feac955515777e79460a5ca7c61ebf {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.MethArray.Green.T C3N-01086 CCRCC Methylation_Array tumor CPT0212410006 203219650004_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f3d938ec-e405-4450-ae97-46d15fa3b8e1 d4c7a069d2aa270caf39d79ca5484850 {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor"} -C3N-01086.MethArray.Red.A C3N-01086 CCRCC Methylation_Array tissue_normal CPT0212420006 204930640051_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 b86fd210-91e6-4e29-b618-ce1fa671022e b26f93886d7a7cbeac09dca25a974eed {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.MethArray.Red.T C3N-01086 CCRCC Methylation_Array tumor CPT0212410006 203219650004_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 49f5ed34-8672-41da-866c-a226f3a107b9 b0360a3a0a550e5f3d87a68868bb224d {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor"} -C3N-01086.miRNA-Seq.A.hg38 C3N-01086 CCRCC miRNA-Seq tissue_normal CPT0212420009 896a4df2-ca3d-4ea1-a921-329fb5bf549a_mirnaseq_gdc_realn.bam 236410609 BAM harmonized CPTAC3 bf10260a-451b-4075-a931-69a2353fc3d0 e9eb2a6b42f61306c0dbf68127fa8d1a {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.miRNA-Seq.S17_L001_R1.T C3N-01086 CCRCC miRNA-Seq tumor CPT0212410008 190206_UNC31-K00269_0191_AH2WY5BBXY_CATGGC_S17_L001_R1_001.unaln.bam 184611976 BAM S17_L001_R1 unaligned CPTAC3 f60eecbf-b0f1-4570-ae01-45d2021522a3 4cf526edc21e3e38c5875121e7c288ba {"aliquot_tag": "ALQ_c52e8568", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01086.miRNA-Seq.S7_L003_R1.A C3N-01086 CCRCC miRNA-Seq tissue_normal CPT0212420009 190206_UNC31-K00269_0191_AH2WY5BBXY_TATAAT_S7_L003_R1_001.unaln.bam 216672516 BAM S7_L003_R1 unaligned CPTAC3 78a56f38-a3b1-4960-9b8e-024c3ec0d3fe b05695f50671eab19dc2f8e6aa749d30 {"aliquot_tag": "ALQ_f589cf2e", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.miRNA-Seq.T.hg38 C3N-01086 CCRCC miRNA-Seq tumor CPT0212410008 cb0b8b80-85c8-4c03-ae89-99da840a8fe2_mirnaseq_gdc_realn.bam 206569427 BAM harmonized CPTAC3 51e488b2-e2d6-4606-bced-06b34be80ee8 922e86f4f413d57fd590dc3aba53c5f7 {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor"} -C3N-01086.RNA-Seq.chimeric.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.chimeric.gdc_realn.bam 30031390 BAM chimeric harmonized CPTAC3 60cb00b8-0139-470a-a902-8f0317083593 8116c41c76075580d56e031f7519c4b8 {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.RNA-Seq.chimeric.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.chimeric.gdc_realn.bam 183130078 BAM chimeric harmonized CPTAC3 ce05deb9-d362-48c4-83bd-76fb47931267 59fa34b9948abcc031c3588e2115f5f7 {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor"} -C3N-01086.RNA-Seq.genomic.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.genomic.gdc_realn.bam 7179809396 BAM genomic harmonized CPTAC3 c156e4e3-6d4d-4fa2-ae65-8eac5ed89e0b 9f808d5d065aa65666c5a0fec47d9132 {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.RNA-Seq.genomic.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.genomic.gdc_realn.bam 10150681237 BAM genomic harmonized CPTAC3 8e03080c-557b-4e2e-9178-232c9d151b77 370c41cea677f7a25bc54b9f4a118c97 {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor"} -C3N-01086.RNA-Seq.S3_L001_R1.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R1_001.fastq.gz 4691581606 FASTQ S3_L001_R1 unaligned CPTAC3 ead9c882-8720-4aa4-8dbb-c89c306b5fc4 02724e38b012ed2f1c7ccc7e79e2c384 {"aliquot_tag": "ALQ_c52e8568", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01086.RNA-Seq.S3_L001_R2.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R2_001.fastq.gz 5214104365 FASTQ S3_L001_R2 unaligned CPTAC3 545600d9-3d1f-41ad-a42d-f0190e1869ea e7dee640fdda06d006cb8302b5e7e630 {"aliquot_tag": "ALQ_c52e8568", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01086.RNA-Seq.S4_L005_R1.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3278264030 FASTQ S4_L005_R1 unaligned CPTAC3 5c4d6621-9a86-4233-9327-4c0620995734 987ccc48478a48d40db8dbf5d9eb9758 {"aliquot_tag": "ALQ_f589cf2e", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.RNA-Seq.S4_L005_R2.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 3536311156 FASTQ S4_L005_R2 unaligned CPTAC3 1760d6b5-d062-40c6-b9e2-dd8948acb602 9d92331e3baa78c6afcad72b39ba40af {"aliquot_tag": "ALQ_f589cf2e", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.RNA-Seq.transcriptome.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.transcriptome.gdc_realn.bam 8087077427 BAM transcriptome harmonized CPTAC3 c97d996e-36b1-42ad-8ebe-55c1e9f4b3d3 4d1fdf0ccfad13c17ac223553ef85147 {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.RNA-Seq.transcriptome.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.transcriptome.gdc_realn.bam 11382550420 BAM transcriptome harmonized CPTAC3 83c89a5f-74bf-46c6-846f-02a839c11904 1ff163b66e4c3418d847b03e5b3bfdfd {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor"} -C3N-01086.WGS.N C3N-01086 CCRCC WGS blood_normal CPT0212500002 CPT0212500002.WholeGenome.RP-1303.bam 54964361879 BAM aligned CPTAC3 79dd8e98-7745-4ef5-ad39-22b049d9c269 472450cd68d1bcb209a752d7eecafda6 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal"} -C3N-01086.WGS.N.hg38 C3N-01086 CCRCC WGS blood_normal CPT0212500002 c681e10a-745d-4cf3-8df2-620991d38e30_wgs_gdc_realn.bam 80918580844 BAM harmonized CPTAC3 fccaa724-9e43-4b29-a796-cc00b5453029 61a5fc4ed7d0fae16b1008c9d44fe199 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal"} -C3N-01086.WGS.T C3N-01086 CCRCC WGS tumor CPT0212410006 CPT0212410006.WholeGenome.RP-1303.bam 52045941324 BAM aligned CPTAC3 2f8342dd-d0d5-4dfd-afb6-bea9c6f01863 bb913c9533800d47407ce23cfa217d3e {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor"} -C3N-01086.WGS.T.hg38 C3N-01086 CCRCC WGS tumor CPT0212410006 c860018b-fb57-4dae-9864-f44a1deefd5d_wgs_gdc_realn.bam 77263322529 BAM harmonized CPTAC3 e220f7bd-ce37-49e1-a7de-457f19cff2cc 041dd901a8fefdd0c1556e0da50ca288 {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor"} -C3N-01086.WXS.A C3N-01086 CCRCC WXS tissue_normal CPT0212420006 CPT0212420006.WholeExome.RP-1303.bam 23881147088 BAM aligned CPTAC3 20b429ac-abd6-4eee-b98e-b09ade098b16 833b3f2f32dd4db68f08b2dcc0ba95dd {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.WXS.A.hg38 C3N-01086 CCRCC WXS tissue_normal CPT0212420006 3af2bdb8-2e45-447e-a02b-70f881cfc3e9_wxs_gdc_realn.bam 33359276974 BAM harmonized CPTAC3 231cf754-0757-4623-af3f-b833cebd35fb a36af11e086460c9c1d7b5e2ab396e82 {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01086.WXS.N C3N-01086 CCRCC WXS blood_normal CPT0212500002 CPT0212500002.WholeExome.RP-1303.bam 26071460035 BAM aligned CPTAC3 a057b988-e617-4c06-8dfb-769f3b4f989f bc1f25b07b11d3149d8e2afd0681ea16 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal"} -C3N-01086.WXS.N.hg38 C3N-01086 CCRCC WXS blood_normal CPT0212500002 c681e10a-745d-4cf3-8df2-620991d38e30_wxs_gdc_realn.bam 35579355449 BAM harmonized CPTAC3 1dfa1480-cdbb-40a8-ae09-23d6b893f189 ec5ce01da97e7eccdee8035972515562 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal"} -C3N-01086.WXS.T C3N-01086 CCRCC WXS tumor CPT0212410006 CPT0212410006.WholeExome.RP-1303.bam 25370552707 BAM aligned CPTAC3 53538aea-a027-4996-a09a-11e5b66f0a77 48f1853db55cde5e52a330529322e70a {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor"} -C3N-01086.WXS.T.hg38 C3N-01086 CCRCC WXS tumor CPT0212410006 c860018b-fb57-4dae-9864-f44a1deefd5d_wxs_gdc_realn.bam 35617341241 BAM harmonized CPTAC3 4c944d70-9a89-4ac4-93d8-15d55095edb2 490940574d2198f7d072c95f60fce21b {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor"} -C3N-01088.MethArray.Green.A C3N-01088 CCRCC Methylation_Array tissue_normal CPT0212600006 204930640064_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9963ccce-04ce-4119-b979-7632527a2966 2e3a7cb1190977e1d0031d46c0b615fa {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.MethArray.Green.T C3N-01088 CCRCC Methylation_Array tumor CPT0212590006 203219650164_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 90224673-1b22-4207-ab4b-ba25909a4807 71978625680b57c95a3315c22f8163e9 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor"} -C3N-01088.MethArray.Red.A C3N-01088 CCRCC Methylation_Array tissue_normal CPT0212600006 204930640064_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 ae779cda-b9ba-4057-9600-5f8a7a301189 89d6a0b0a3c5df197b4e39c7ccdb91da {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.MethArray.Red.T C3N-01088 CCRCC Methylation_Array tumor CPT0212590006 203219650164_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 741fca1c-1ed0-45cb-a026-bedc54882d59 da5e394658a1205735960fe648e2913e {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor"} -C3N-01088.miRNA-Seq.A.hg38 C3N-01088 CCRCC miRNA-Seq tissue_normal CPT0212600009 613af411-fca7-4a15-8d88-b89e4c86ddcc_mirnaseq_gdc_realn.bam 227677399 BAM harmonized CPTAC3 5eaff31f-acfa-4726-bdff-4d26508ae6da 4d40e20f8154425752e87fe76b17183f {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.miRNA-Seq.S22_L001_R1.T C3N-01088 CCRCC miRNA-Seq tumor CPT0212590009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAACTA_S22_L001_R1_001.unaln.bam 204876617 BAM S22_L001_R1 unaligned CPTAC3 2501fa5d-250c-4bb4-9318-f08d639a8217 b330b938b10bf607e62d5f6a775e1362 {"aliquot_tag": "ALQ_49052d9a", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01088.miRNA-Seq.S6_L003_R1.A C3N-01088 CCRCC miRNA-Seq tissue_normal CPT0212600009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCATTC_S6_L003_R1_001.unaln.bam 207338174 BAM S6_L003_R1 unaligned CPTAC3 3f036bde-ac2d-4fad-a8db-e6e305d9a884 d0fbed4926b8ed24826726e7384a2ec2 {"aliquot_tag": "ALQ_c2813d45", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.miRNA-Seq.T.hg38 C3N-01088 CCRCC miRNA-Seq tumor CPT0212590009 82202ca4-ba36-4f26-b2b0-63af398bd4fd_mirnaseq_gdc_realn.bam 225953614 BAM harmonized CPTAC3 e240524b-338a-4c20-81a6-e598c048ced3 3a1a4c7ce9c17789ca29226ae0ad167e {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor"} -C3N-01088.RNA-Seq.chimeric.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.chimeric.gdc_realn.bam 45568023 BAM chimeric harmonized CPTAC3 df775deb-9412-42f9-bade-ba49b20170d9 846a750b8062e6d448ac79fe563cdfd5 {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.RNA-Seq.chimeric.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.chimeric.gdc_realn.bam 360623498 BAM chimeric harmonized CPTAC3 c69d391d-49b0-4a53-b909-bee135ad2f5d 8f1068958f3614c51deb33ff1f10c62d {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor"} -C3N-01088.RNA-Seq.genomic.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.genomic.gdc_realn.bam 9578137316 BAM genomic harmonized CPTAC3 b72ba7b0-95ec-46f0-839f-e9efe1cb252a 7313cd36fdf859e63b2a591ff905ffac {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.RNA-Seq.genomic.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.genomic.gdc_realn.bam 6767517474 BAM genomic harmonized CPTAC3 1d18d300-161e-4bbf-bb62-39e819ae1c57 d9a90f8b52ece7d404fd680e44695003 {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor"} -C3N-01088.RNA-Seq.S19_L006_R1.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R1_001.fastq.gz 4362840178 FASTQ S19_L006_R1 unaligned CPTAC3 a2db1345-920d-4be9-9023-fbbe878c81f0 410c3d411af0dac7c5e7e9f9b63edba9 {"aliquot_tag": "ALQ_c2813d45", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.RNA-Seq.S19_L006_R2.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R2_001.fastq.gz 4868455888 FASTQ S19_L006_R2 unaligned CPTAC3 73f8a436-c7c5-4ae4-9d1c-9c365166951b b3a908d217504842720faa76a940d86b {"aliquot_tag": "ALQ_c2813d45", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.RNA-Seq.S23_L006_R1.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3077185301 FASTQ S23_L006_R1 unaligned CPTAC3 df9d1763-5eae-4b0f-9643-5ae242104401 46d1fa28f79684a90fa6b4d0fdf441a2 {"aliquot_tag": "ALQ_49052d9a", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01088.RNA-Seq.S23_L006_R2.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 3359103403 FASTQ S23_L006_R2 unaligned CPTAC3 0b69c9a4-8a12-4af1-9887-f4517691a138 7edc3383d5fe533d9dab24038a22e154 {"aliquot_tag": "ALQ_49052d9a", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01088.RNA-Seq.transcriptome.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.transcriptome.gdc_realn.bam 11488220780 BAM transcriptome harmonized CPTAC3 dbd3333a-1c64-4fba-8aa6-961007e90b61 57e087e7a8a5a3a5ba2ec07e4ea5964c {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.RNA-Seq.transcriptome.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.transcriptome.gdc_realn.bam 7604247637 BAM transcriptome harmonized CPTAC3 94efa4c1-00fc-4aeb-b696-05d9aa77418c 7efe079a7e044ee387b59b0e7d6e8ece {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor"} -C3N-01088.WGS.N C3N-01088 CCRCC WGS blood_normal CPT0212680002 CPT0212680002.WholeGenome.RP-1303.bam 56101950229 BAM aligned CPTAC3 e78aac01-42c7-4a6c-aeb4-608ed776b3a8 1a4e323ad3d18946f1753300b4fc8246 {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01088.WGS.N.hg38 C3N-01088 CCRCC WGS blood_normal CPT0212680002 48cb13a6-1357-49f8-9eec-d1e813225a06_wgs_gdc_realn.bam 81660921751 BAM harmonized CPTAC3 321eeb12-ed4c-42f6-b208-4d6266888bf8 c1e81ab09e2b8b2221f7a504948b1c57 {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01088.WGS.T C3N-01088 CCRCC WGS tumor CPT0212590006 CPT0212590006.WholeGenome.RP-1303.bam 67730311406 BAM aligned CPTAC3 a389eb11-e298-44dc-9893-81ec7b4310b2 1100f001912a631d45f7f539f6212e34 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor"} -C3N-01088.WGS.T.hg38 C3N-01088 CCRCC WGS tumor CPT0212590006 3519a00e-d979-41de-8534-7e141450783a_wgs_gdc_realn.bam 99610559668 BAM harmonized CPTAC3 e9768bbe-1d8e-42d5-a461-32f1f081ab46 e6f54ae15493b167ac0781bb2bbbbbc2 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor"} -C3N-01088.WXS.A C3N-01088 CCRCC WXS tissue_normal CPT0212600006 CPT0212600006.WholeExome.RP-1303.bam 18020381867 BAM aligned CPTAC3 e2b2eb1a-f8d5-4cf2-beab-90e0e42da200 8d8098b33849a63b3dc8e0aa3f249768 {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.WXS.A.hg38 C3N-01088 CCRCC WXS tissue_normal CPT0212600006 010d7f04-c113-4ded-9625-821ce71a1e30_wxs_gdc_realn.bam 25330949192 BAM harmonized CPTAC3 f5e78a48-55ea-437d-821c-457bd7318157 d5b1d2081139e9e479351609aa7059eb {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01088.WXS.N C3N-01088 CCRCC WXS blood_normal CPT0212680002 CPT0212680002.WholeExome.RP-1303.bam 21314963812 BAM aligned CPTAC3 fd460d44-971b-4dc4-96aa-c9f373ad1005 245560ceb1f94fe49e6a8464290370bd {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01088.WXS.N.hg38 C3N-01088 CCRCC WXS blood_normal CPT0212680002 48cb13a6-1357-49f8-9eec-d1e813225a06_wxs_gdc_realn.bam 30107006487 BAM harmonized CPTAC3 90f220df-5d18-4979-addd-6ea88202fe29 ac213d6f9265367e6ca5d0ffd77319e9 {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01088.WXS.T C3N-01088 CCRCC WXS tumor CPT0212590006 CPT0212590006.WholeExome.RP-1303.bam 24417822584 BAM aligned CPTAC3 bd764f66-cfd9-4695-a884-61342815f079 58b8200c421ca24be30dad74371ee68d {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor"} -C3N-01088.WXS.T.hg38 C3N-01088 CCRCC WXS tumor CPT0212590006 3519a00e-d979-41de-8534-7e141450783a_wxs_gdc_realn.bam 34152745481 BAM harmonized CPTAC3 64fea596-14a1-4761-951f-81cd42f394a7 98382c99348c3cd5b0f48cc778f7ce09 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor"} -C3N-01090.MethArray.Green.A C3N-01090 CCRCC Methylation_Array tissue_normal CPT0212780006 204930630071_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 aad98026-c966-4b67-b756-acfac218b243 b6ba6e81bbd923dcde6ca8a92f4abc2d {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.MethArray.Green.T C3N-01090 CCRCC Methylation_Array tumor CPT0212770006 203219670150_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 78481920-fc90-482c-9554-2c6519340457 709c338660622d34c706c5f488a8e66b {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor"} -C3N-01090.MethArray.Red.A C3N-01090 CCRCC Methylation_Array tissue_normal CPT0212780006 204930630071_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 d424a0c9-9cea-4938-b33b-5c5c39293f8f 95137802ef8a6443b4f4f96fe546fea2 {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.MethArray.Red.T C3N-01090 CCRCC Methylation_Array tumor CPT0212770006 203219670150_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 66a1a8aa-392e-43a7-9b01-f25d98bdd14a 897d76176c6d9c580bfda85253329f83 {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor"} -C3N-01090.miRNA-Seq.A.hg38 C3N-01090 CCRCC miRNA-Seq tissue_normal CPT0212780009 54be5da6-8bf0-4a4e-b975-894783e15886_mirnaseq_gdc_realn.bam 224159387 BAM harmonized CPTAC3 e8b45cd9-4414-4c2b-95f6-166f420a8887 d935c8bf9ff288a02abb996711c5fe84 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.miRNA-Seq.S16_L001_R1.T C3N-01090 CCRCC miRNA-Seq tumor CPT0212770008 190206_UNC31-K00269_0191_AH2WY5BBXY_CATTTT_S16_L001_R1_001.unaln.bam 221569842 BAM S16_L001_R1 unaligned CPTAC3 f7343596-909c-4ef0-829e-f96c6bca564a 499e9079ddcb488773144e137f85f7ee {"aliquot_tag": "ALQ_ccfa0266", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01090.miRNA-Seq.S5_L003_R1.A C3N-01090 CCRCC miRNA-Seq tissue_normal CPT0212780009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCCCGA_S5_L003_R1_001.unaln.bam 204209004 BAM S5_L003_R1 unaligned CPTAC3 07106f40-3b48-4ef6-9996-29478fd44e01 17369fd5c6c736f65fd4bc181148a1b5 {"aliquot_tag": "ALQ_39ada521", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.miRNA-Seq.T.hg38 C3N-01090 CCRCC miRNA-Seq tumor CPT0212770008 299573a2-9698-4079-b29c-7b6af661fbb3_mirnaseq_gdc_realn.bam 251207990 BAM harmonized CPTAC3 6f8169e0-de19-4f4b-90ed-dca464173500 339305b2cf369f2dae9d660411adf710 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor"} -C3N-01090.RNA-Seq.chimeric.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.chimeric.gdc_realn.bam 46492762 BAM chimeric harmonized CPTAC3 540ffdfe-a8c9-4200-9b86-36c41acc94bd c7fef87e0dd1341de713202c1ac4d146 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.RNA-Seq.chimeric.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.chimeric.gdc_realn.bam 127856038 BAM chimeric harmonized CPTAC3 8284b05e-f0f8-49d0-a158-9fc56f702d22 da6750832beb45fcf2473724f8c7f896 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor"} -C3N-01090.RNA-Seq.genomic.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.genomic.gdc_realn.bam 10293774017 BAM genomic harmonized CPTAC3 f8010824-c532-45e6-9644-964d0fbcabee fdc62512c2ddf93340361ae967b085d1 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.RNA-Seq.genomic.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.genomic.gdc_realn.bam 8318230189 BAM genomic harmonized CPTAC3 80175803-7d71-401f-886d-aacc931a8cb0 4362508d8e28051c3a0c2779e372ab51 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor"} -C3N-01090.RNA-Seq.S18_L006_R1.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R1_001.fastq.gz 4807323085 FASTQ S18_L006_R1 unaligned CPTAC3 80cdb882-6cb5-46f6-9c86-a3b364affdc0 5d87b051ad8014795f5d1d91c33fbbae {"aliquot_tag": "ALQ_39ada521", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.RNA-Seq.S18_L006_R2.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R2_001.fastq.gz 5300466590 FASTQ S18_L006_R2 unaligned CPTAC3 3d92f34b-5ccf-419a-be06-ab39ca23477e f43b6fffd63f4112c23c4e0ef30b906d {"aliquot_tag": "ALQ_39ada521", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.RNA-Seq.S1_L001_R1.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3631989786 FASTQ S1_L001_R1 unaligned CPTAC3 7e44360b-cc44-40ac-ae12-c22720689822 bd1054992f7134e190808b121290cd55 {"aliquot_tag": "ALQ_ccfa0266", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01090.RNA-Seq.S1_L001_R2.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4230805361 FASTQ S1_L001_R2 unaligned CPTAC3 fdb86b39-7ebe-491a-a788-103845da6f4f 9d42ecf9c456d64efbb2dc79e0d73cae {"aliquot_tag": "ALQ_ccfa0266", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01090.RNA-Seq.transcriptome.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.transcriptome.gdc_realn.bam 12074918202 BAM transcriptome harmonized CPTAC3 8b4c9504-0632-431c-9a48-e8fa7ec11d70 0f87dbf6fa019cc00752a340c8d4d195 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.RNA-Seq.transcriptome.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.transcriptome.gdc_realn.bam 9604631655 BAM transcriptome harmonized CPTAC3 e5216861-0b3b-41ec-9ae9-3ab2cfa7b144 23dd8a62825bb256ca8775f0d5634872 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor"} -C3N-01090.WGS.A C3N-01090 CCRCC WGS tissue_normal CPT0212780006 CPT0212780006.WholeGenome.RP-1303.bam 61888106874 BAM aligned CPTAC3 5ec7e7bf-5309-4f12-a139-ed5874b807f3 f9de1265774941bf52342bfa284b100e {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.WGS.A.hg38 C3N-01090 CCRCC WGS tissue_normal CPT0212780006 ad7ce0f3-e2d5-475a-ad89-0a828f6c2985_wgs_gdc_realn.bam 91666748893 BAM harmonized CPTAC3 725ce428-0ce4-4995-afde-a75355741bf4 1d1514bb9daed9db0b88e255f8e694cf {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.WGS.N C3N-01090 CCRCC WGS blood_normal CPT0212840002 CPT0212840002.WholeGenome.RP-1303.bam 68301465809 BAM aligned CPTAC3 9dc8e8d8-496c-4b5f-806f-f5cccfc6e998 085863ce9f557c6cd73fbb31752b2ab7 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01090.WGS.N.hg38 C3N-01090 CCRCC WGS blood_normal CPT0212840002 b73d618c-e2c8-4f62-80aa-8019afa8f95e_wgs_gdc_realn.bam 99479984269 BAM harmonized CPTAC3 791745c6-4a8f-491f-ae96-32a0abf7c0f0 14fb5a71ef1c75af85578f90f1e4b360 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01090.WGS.T C3N-01090 CCRCC WGS tumor CPT0212770006 CPT0212770006.WholeGenome.RP-1303.bam 58766230149 BAM aligned CPTAC3 65f02135-ce95-40eb-ba7a-67657d3d29a2 4bc612b07130b9ce620d135bba2620b4 {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor"} -C3N-01090.WGS.T.hg38 C3N-01090 CCRCC WGS tumor CPT0212770006 5f3823c0-8ab0-4e86-8e0e-ad7484e0b34b_wgs_gdc_realn.bam 87153908162 BAM harmonized CPTAC3 e0441328-e759-4cf0-9c6c-31f519cd52bc 473f77617ef1a3da7bcd4d6facf00b4d {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor"} -C3N-01090.WXS.A C3N-01090 CCRCC WXS tissue_normal CPT0212780006 CPT0212780006.WholeExome.RP-1303.bam 22203294547 BAM aligned CPTAC3 80a4e2c7-f098-4594-b529-62c8f3c08f75 fe0c2b2919508658b70791e79b2fec7d {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.WXS.A.hg38 C3N-01090 CCRCC WXS tissue_normal CPT0212780006 ad7ce0f3-e2d5-475a-ad89-0a828f6c2985_wxs_gdc_realn.bam 30007100649 BAM harmonized CPTAC3 76a7a66f-8eeb-476f-985e-8fd812607a0a c9e2a76d19dcd526fde8a20298eaa69e {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01090.WXS.N C3N-01090 CCRCC WXS blood_normal CPT0212840002 CPT0212840002.WholeExome.RP-1303.bam 51325884399 BAM aligned CPTAC3 4f179706-94f9-41ff-8edc-d407617ed930 e0711c36d2ab1918204b0cfcb74be4f5 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01090.WXS.N.hg38 C3N-01090 CCRCC WXS blood_normal CPT0212840002 b73d618c-e2c8-4f62-80aa-8019afa8f95e_wxs_gdc_realn.bam 69554962591 BAM harmonized CPTAC3 ecf74575-3a99-463a-ab74-6cdd86dad1cb f75a1d677010f171e70ea0ddbf228785 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01090.WXS.T C3N-01090 CCRCC WXS tumor CPT0212770006 CPT0212770006.WholeExome.RP-1303.bam 30732832045 BAM aligned CPTAC3 76489890-1403-4aff-a3b3-aaf0060911fe 61a939ac978e14d63b17819e738077db {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor"} -C3N-01090.WXS.T.hg38 C3N-01090 CCRCC WXS tumor CPT0212770006 5f3823c0-8ab0-4e86-8e0e-ad7484e0b34b_wxs_gdc_realn.bam 41234080641 BAM harmonized CPTAC3 23810382-5589-4890-b27a-e35313f80dba 818156ae6f24e13f5dae006733863030 {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor"} -C3N-01091.MethArray.Green.A C3N-01091 CCRCC Methylation_Array tissue_normal CPT0212940006 204930640024_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8ba97afe-5872-4896-ba2d-853ecb9f6aa5 022128686b07828f1631dffcbf88c425 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.MethArray.Green.T C3N-01091 CCRCC Methylation_Array tumor CPT0212920006 203219650005_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 737eca9d-41d4-47d8-af43-e19f71f8f704 0cbaef0345ecd9ef297eb660a878b7b0 {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor"} -C3N-01091.MethArray.Red.A C3N-01091 CCRCC Methylation_Array tissue_normal CPT0212940006 204930640024_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 13226579-7d0a-4429-b062-1ae1e4196cbc dcc5c292d822f878d5bb685a07609e63 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.MethArray.Red.T C3N-01091 CCRCC Methylation_Array tumor CPT0212920006 203219650005_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 a93c5afb-8a0e-499c-897b-0bba6303b5cd 5c982cfa0610cf80d141b74f32ec85b1 {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor"} -C3N-01091.miRNA-Seq.A.hg38 C3N-01091 CCRCC miRNA-Seq tissue_normal CPT0212940009 1e45ba71-cecb-4c9d-9c84-7659e39e3bf3_mirnaseq_gdc_realn.bam 173359442 BAM harmonized CPTAC3 e3966895-dfc1-4569-877b-99dc41821db0 cd8f76fbe7ce5cbcbc0bf223d76997c6 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.miRNA-Seq.S21_L001_R1.T C3N-01091 CCRCC miRNA-Seq tumor CPT0212920009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACCGG_S21_L001_R1_001.unaln.bam 228438704 BAM S21_L001_R1 unaligned CPTAC3 f46fad03-6d28-497a-b30a-f81946ab86c0 be4a1b7fdd486b36f91868aab7531f75 {"aliquot_tag": "ALQ_4917dcf0", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01091.miRNA-Seq.S47_L008_R1.A C3N-01091 CCRCC miRNA-Seq tissue_normal CPT0212940009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L008_R1_001.unaln.bam 154660323 BAM S47_L008_R1 unaligned CPTAC3 949e7fca-898a-4fe0-9563-abc09af222c4 9459b9c256a05094731b9aa2b3768ecb {"aliquot_tag": "ALQ_c6572950", "sample": "S47", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.miRNA-Seq.T.hg38 C3N-01091 CCRCC miRNA-Seq tumor CPT0212920009 0d3e956a-c323-48e6-9370-a20576d85c60_mirnaseq_gdc_realn.bam 248698819 BAM harmonized CPTAC3 8ba64021-6636-435c-bf59-05224b9b5b59 54413e7f71442a22a030888dcb1e06af {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor"} -C3N-01091.RNA-Seq.chimeric.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.chimeric.gdc_realn.bam 39848740 BAM chimeric harmonized CPTAC3 a0ba317e-1de3-4100-84fb-cc171b08cca8 670fa8227c23566862cc8248c9744854 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.RNA-Seq.chimeric.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.chimeric.gdc_realn.bam 308443078 BAM chimeric harmonized CPTAC3 08d1b366-77bc-4877-a4f2-df33ced7d744 ff5d4c86e8dc7e4722beafdd1542b10e {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor"} -C3N-01091.RNA-Seq.genomic.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.genomic.gdc_realn.bam 9119424393 BAM genomic harmonized CPTAC3 ff216685-8f24-4858-aae8-b802759f49bf eeb656fcbe4bd3518eaa8085ce9b6a41 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.RNA-Seq.genomic.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.genomic.gdc_realn.bam 6748381626 BAM genomic harmonized CPTAC3 29fcc001-473b-4aaf-9716-6bd024321459 3776668f7fd15060eedb9f193bbfcb7f {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor"} -C3N-01091.RNA-Seq.S17_L006_R1.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R1_001.fastq.gz 3985013357 FASTQ S17_L006_R1 unaligned CPTAC3 e6046b4f-f6fb-4c3e-bc48-24b2ad64399d 6f07e3b0d477c4c429415fc4f4ca5cfd {"aliquot_tag": "ALQ_c6572950", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.RNA-Seq.S17_L006_R2.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R2_001.fastq.gz 4299492000 FASTQ S17_L006_R2 unaligned CPTAC3 334710ba-9516-42a2-8cc8-853f9e6105f8 5e79c3f305293069780ad2d373f38111 {"aliquot_tag": "ALQ_c6572950", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.RNA-Seq.S22_L006_R1.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 2953584806 FASTQ S22_L006_R1 unaligned CPTAC3 abd032a1-3c71-4853-a8bc-ed677c4b9c33 3f9a635801a1930796b50cee3473f226 {"aliquot_tag": "ALQ_4917dcf0", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01091.RNA-Seq.S22_L006_R2.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3231197568 FASTQ S22_L006_R2 unaligned CPTAC3 bb4a8318-d8c4-475e-b06e-6f374c990db7 035bca4193a71a39a250c28a77a93c69 {"aliquot_tag": "ALQ_4917dcf0", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01091.RNA-Seq.transcriptome.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.transcriptome.gdc_realn.bam 9441615014 BAM transcriptome harmonized CPTAC3 ab0faf2e-88b2-44b1-bf21-c248384ead2a dff2d305f917f581bf498a90452de719 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.RNA-Seq.transcriptome.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.transcriptome.gdc_realn.bam 8099824318 BAM transcriptome harmonized CPTAC3 f07fd04b-add4-41ae-8b61-a3a2389f526c 7017d5f074dd969822ccd2f10b699a04 {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor"} -C3N-01091.WGS.A C3N-01091 CCRCC WGS tissue_normal CPT0212940006 CPT0212940006.WholeGenome.RP-1303.bam 66239541263 BAM aligned CPTAC3 3f4fca60-27ce-4f44-ab20-d025a3fdbe9b a2be00a069270be6dd75b8be06b614d6 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.WGS.A.hg38 C3N-01091 CCRCC WGS tissue_normal CPT0212940006 0182fb2a-3733-4d64-ae56-aa514b46d1c1_wgs_gdc_realn.bam 96611211579 BAM harmonized CPTAC3 91803018-bfb7-494f-8bc4-a50aa8a502bb cc33844e66b285a9b2d6488101fbbdca {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.WGS.N C3N-01091 CCRCC WGS blood_normal CPT0213020002 CPT0213020002.WholeGenome.RP-1303.bam 56062597281 BAM aligned CPTAC3 567480cd-9d3d-4189-afd1-853fd619bd00 f9a6da9db931ae9caaf99e5899cf3e01 {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal"} -C3N-01091.WGS.N.hg38 C3N-01091 CCRCC WGS blood_normal CPT0213020002 6518fe48-b295-4778-b70b-c6f99d995c4b_wgs_gdc_realn.bam 82182216837 BAM harmonized CPTAC3 54a268c9-4b2f-4f95-bfe2-91c40eb47c99 914ad8070e900b93d01e5bbca6f51d2c {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal"} -C3N-01091.WGS.T C3N-01091 CCRCC WGS tumor CPT0212920006 CPT0212920006.WholeGenome.RP-1303.bam 67829751676 BAM aligned CPTAC3 377c7a1e-8cb1-4521-92dc-b10e6f72c2af 9d667002c0d403ac95618dcc7fb7f2ae {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor"} -C3N-01091.WGS.T.hg38 C3N-01091 CCRCC WGS tumor CPT0212920006 96449553-34c8-473b-a922-82a83ea0ee54_wgs_gdc_realn.bam 99493139765 BAM harmonized CPTAC3 07510df1-cd77-42c5-9660-46300b6d0439 85c0c98185bffcf0196d5a744aed9a9a {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor"} -C3N-01091.WXS.A C3N-01091 CCRCC WXS tissue_normal CPT0212940006 CPT0212940006.WholeExome.RP-1303.bam 29391077517 BAM aligned CPTAC3 6c3bc20f-82a4-4d97-b89a-7da79449a22b 01dd44483fc060cff4f4feae0c07a3c8 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.WXS.A.hg38 C3N-01091 CCRCC WXS tissue_normal CPT0212940006 0182fb2a-3733-4d64-ae56-aa514b46d1c1_wxs_gdc_realn.bam 40155676871 BAM harmonized CPTAC3 008687ca-695e-402b-9f73-a0b8da25769b 3c140e0ae9fdf4c0af790aec7d393414 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01091.WXS.N C3N-01091 CCRCC WXS blood_normal CPT0213020002 CPT0213020002.WholeExome.RP-1303.bam 22330479496 BAM aligned CPTAC3 084fdd0e-c853-49b3-8984-00dcb431c9d4 4e4edcf2ed6dac06c4a919929684e6f7 {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal"} -C3N-01091.WXS.N.hg38 C3N-01091 CCRCC WXS blood_normal CPT0213020002 6518fe48-b295-4778-b70b-c6f99d995c4b_wxs_gdc_realn.bam 30613973545 BAM harmonized CPTAC3 220e8d09-4d3b-4820-8c0a-b4fe60c916d7 d8dd9277a466f3f4c42cfa25a5773ef2 {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal"} -C3N-01091.WXS.T C3N-01091 CCRCC WXS tumor CPT0212920006 CPT0212920006.WholeExome.RP-1303.bam 25487812596 BAM aligned CPTAC3 9da52ea1-7f3d-4af7-96ba-a4a98db5e878 06484678cff6e1fb3e4c8e4e31d7fcda {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor"} -C3N-01091.WXS.T.hg38 C3N-01091 CCRCC WXS tumor CPT0212920006 96449553-34c8-473b-a922-82a83ea0ee54_wxs_gdc_realn.bam 35284249131 BAM harmonized CPTAC3 ef8fa604-2ee9-46ce-a011-e6eb1a40d997 74346bfceebc77f95d94b994d189d2e3 {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor"} -C3N-01165.ADD_4fd44422.MethArray.Green.T C3N-01165 PDA Methylation_Array tumor CPT0093930010 202234360029_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 f2c1a165-e527-4581-9e9e-4fac1b9c76ac 7aa99c9c59edd31264324a552d8aad40 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01165.ADD_4fd44422.MethArray.Red.T C3N-01165 PDA Methylation_Array tumor CPT0093930010 202234360029_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 928411ca-b73b-4962-8cf1-a2ee2bacf803 710a0772cc5967f156fcb30c0cec3814 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01165.ADD_4fd44422.WGS.T C3N-01165 PDA WGS tumor CPT0093930010 CPT0093930010.WholeGenome.RP-1303.bam 122850949726 BAM aligned CPTAC3 19890ca7-b5c6-4a52-9734-d374aff284e5 523858c22d5b878c575abac5b1f58003 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01165.ADD_4fd44422.WGS.T.hg38 C3N-01165 PDA WGS tumor CPT0093930010 2272a222-c5c0-407b-858c-83cf60566517_wgs_gdc_realn.bam 182069914786 BAM harmonized CPTAC3 69f86aa0-f83f-4969-9e07-86e0de73f22f 40ebf8ca87d2ee40734b3467b96cb91a {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01165.ADD_4fd44422.WXS.T C3N-01165 PDA WXS tumor CPT0093930010 CPT0093930010.WholeExome.RP-1303.bam 31855767492 BAM aligned CPTAC3 feb6a01d-bf59-4708-8992-bf8477de3413 dba6fc33334c41f9326ffe7379f3ab2c {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01165.ADD_4fd44422.WXS.T.hg38 C3N-01165 PDA WXS tumor CPT0093930010 2272a222-c5c0-407b-858c-83cf60566517_wxs_gdc_realn.bam 44151910887 BAM harmonized CPTAC3 5ab73544-ffac-4cc9-9d93-66f7fda0ad56 0580c3b4e219fc4e3695b5fceb43cff7 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01165.miRNA-Seq.S40_L007_R1.T C3N-01165 PDA miRNA-Seq tumor CPT0093930007 180828_UNC32-K00270_0112_AHWTLNBBXX_CATGGC_S40_L007_R1_001.unaln.bam 231459983 BAM S40_L007_R1 unaligned CPTAC3 a4bb9742-712a-4628-81e6-e173bf2471d3 8fb811fd4d4e6cd12b42e374385d2573 {"aliquot_tag": "ALQ_c8abe0c0", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01165.miRNA-Seq.T.hg38 C3N-01165 PDA miRNA-Seq tumor CPT0093930007 fde92faa-7c74-4f79-bac9-6be631daf1e1_mirnaseq_gdc_realn.bam 261501289 BAM harmonized CPTAC3 474a0f30-7263-4cb6-9680-de3314ef21f0 43f5fe6f0687cbebc9b2af55b4ae059d {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor"} -C3N-01165.RNA-Seq.chimeric.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.chimeric.gdc_realn.bam 34053818 BAM chimeric harmonized CPTAC3 4a137d1e-f949-4fe2-b395-2425094ba940 311c8a231b53223e5b71d3e0a766e56e {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor"} -C3N-01165.RNA-Seq.genomic.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.genomic.gdc_realn.bam 10079730004 BAM genomic harmonized CPTAC3 698b47fb-21aa-4307-99fd-c64cad53c6b8 270e68e9c497edf20d5b44eff8981964 {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor"} -C3N-01165.RNA-Seq.S6_L002_R1.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4376687728 FASTQ S6_L002_R1 unaligned CPTAC3 ef9122ed-25a0-4e91-903f-ec3cf56105ee d85916536466327d6813841d35b1a2fe {"aliquot_tag": "ALQ_c8abe0c0", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01165.RNA-Seq.S6_L002_R2.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4712899554 FASTQ S6_L002_R2 unaligned CPTAC3 4f12b59a-8a2a-4e1f-96b6-8a72c5a9737d 6ac55326ffd00baf6123813a413bbc54 {"aliquot_tag": "ALQ_c8abe0c0", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01165.RNA-Seq.transcriptome.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.transcriptome.gdc_realn.bam 11851837713 BAM transcriptome harmonized CPTAC3 10bccbb0-e949-406e-b89b-6051740573f6 cea5e70d3d3f943562a471a4db682bb1 {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor"} -C3N-01165.WGS.N C3N-01165 PDA WGS blood_normal CPT0093970002 CPT0093970002.WholeGenome.RP-1303.bam 56928720368 BAM aligned CPTAC3 92d04e5a-5d89-4d3b-ba8f-220208a003ca 904b23428300ff91381ac4a12e56839d {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01165.WGS.N.hg38 C3N-01165 PDA WGS blood_normal CPT0093970002 1e3bbe99-f650-4ccf-ae6c-b3808b778c5e_wgs_gdc_realn.bam 84357331846 BAM harmonized CPTAC3 f38c4d33-0ba9-47bd-be74-6ea2ab3aba11 ca6a4f53b13ec4ab38f88ec9d203e96d {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01165.WXS.N C3N-01165 PDA WXS blood_normal CPT0093970002 CPT0093970002.WholeExome.RP-1303.bam 35264162772 BAM aligned CPTAC3 799eeb65-822a-48e0-8a2d-0d8dc7ce8241 b544a05913e8f72f54473568fe410fef {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01165.WXS.N.hg38 C3N-01165 PDA WXS blood_normal CPT0093970002 1e3bbe99-f650-4ccf-ae6c-b3808b778c5e_wxs_gdc_realn.bam 48542251994 BAM harmonized CPTAC3 c5233abe-7b5c-4316-8002-4f8ba08970ec 00e13a6feac18ec5b35e3e2efe6b4671 {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal"} -C3N-01165.WXS.T C3N-01165 PDA WXS tumor CPT0093930010_1 CPT0093930010_1.WholeExome.RP-1303.bam 62910727021 BAM aligned CPTAC3 6e14723e-a366-40a6-96a9-a76b4a350682 3cd3d4fade6ad51083c01a71ec4f9597 {"aliquot_tag": "ALQ_fb27df23", "gdc_sample_type": "Primary Tumor"} -C3N-01165.WXS.T.hg38 C3N-01165 PDA WXS tumor CPT0093930010_1 6909d633-6f16-4a7d-8c32-e336c7aac09c_wxs_gdc_realn.bam 86614024711 BAM harmonized CPTAC3 8cf32f57-6699-4906-8bdb-7f03c822a787 a2e7ee4dee4c523c4d0334dfacddfec8 {"aliquot_tag": "ALQ_fb27df23", "gdc_sample_type": "Primary Tumor"} -C3N-01166.ADD_38047533.MethArray.Green.T C3N-01166 PDA Methylation_Array tumor CPT0093980010 202234380102_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b0a49f82-f8bf-45f8-859f-9fadc75f33f6 71c5a4e1007ce06d77be08aec719b8e5 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01166.ADD_38047533.MethArray.Red.T C3N-01166 PDA Methylation_Array tumor CPT0093980010 202234380102_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 059c3e26-1f5c-4560-bfff-b5d925f18b24 f01c295b8aed46e9d1f81662186ed209 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01166.ADD_38047533.WGS.T C3N-01166 PDA WGS tumor CPT0093980010 CPT0093980010.WholeGenome.RP-1303.bam 73487719487 BAM aligned CPTAC3 98001c38-0d9e-4ddb-88f8-404984440f7f e72da37a5c6a8c15b74643a7676efe0e {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01166.ADD_38047533.WGS.T.hg38 C3N-01166 PDA WGS tumor CPT0093980010 704b9b95-74af-455e-95f0-b130abeb8c47_wgs_gdc_realn.bam 109576339140 BAM harmonized CPTAC3 fbd5becd-2394-4f66-b183-437504add9ac 1333b76c10b6b461b3ddfc214ef9ab9c {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01166.ADD_38047533.WXS.T C3N-01166 PDA WXS tumor CPT0093980010 CPT0093980010.WholeExome.RP-1303.bam 34518854583 BAM aligned CPTAC3 4132766a-ff1a-47a4-9950-be625d8713ef 623ef29609476580f4277b384876f928 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01166.ADD_38047533.WXS.T.hg38 C3N-01166 PDA WXS tumor CPT0093980010 704b9b95-74af-455e-95f0-b130abeb8c47_wxs_gdc_realn.bam 47899887506 BAM harmonized CPTAC3 de84baa2-f473-49f5-a328-d26f95f19508 80b3fe153c59db000bd98a05040b3d64 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01166.miRNA-Seq.S41_L007_R1.T C3N-01166 PDA miRNA-Seq tumor CPT0093980007 180828_UNC32-K00270_0112_AHWTLNBBXX_CATTTT_S41_L007_R1_001.unaln.bam 336784270 BAM S41_L007_R1 unaligned CPTAC3 06d02bbf-4870-4568-9259-f3532a60c915 e0dc3915d851051570e53f44b52b2fb7 {"aliquot_tag": "ALQ_bf7bd1d1", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01166.miRNA-Seq.T.hg38 C3N-01166 PDA miRNA-Seq tumor CPT0093980007 76121067-2dd1-422a-8d73-0d105a85f876_mirnaseq_gdc_realn.bam 377267757 BAM harmonized CPTAC3 6d353ee8-6aa0-4d13-a24b-7837c0038efb 6a554dc89af03e0ee963bc184a9852d4 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor"} -C3N-01166.RNA-Seq.chimeric.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.chimeric.gdc_realn.bam 37575171 BAM chimeric harmonized CPTAC3 7657ccec-ec94-420d-9c4d-ade0475cf0ea 0ee5c96defa4b02ceaff36818525d1f2 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor"} -C3N-01166.RNA-Seq.genomic.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.genomic.gdc_realn.bam 10666312254 BAM genomic harmonized CPTAC3 4daa3c63-296a-4c28-931f-d011722e62d5 b364fc26ef94ef7c6e6edd5ecf389fb0 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor"} -C3N-01166.RNA-Seq.S8_L002_R1.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 4542018014 FASTQ S8_L002_R1 unaligned CPTAC3 70698283-5209-4695-a659-76d7963312e2 40d75781318f62017a8fdaeddafd3113 {"aliquot_tag": "ALQ_bf7bd1d1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01166.RNA-Seq.S8_L002_R2.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 5112929460 FASTQ S8_L002_R2 unaligned CPTAC3 ccd8a1b9-df8e-4248-a09b-f60845d23eac a0987cd46d06e817b07a442a77922fac {"aliquot_tag": "ALQ_bf7bd1d1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01166.RNA-Seq.transcriptome.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.transcriptome.gdc_realn.bam 11959198044 BAM transcriptome harmonized CPTAC3 b8a6c991-cf4e-4905-8b82-0292c9b8cabb 965759e518ef21649c6d647042002ce5 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor"} -C3N-01166.WGS.N C3N-01166 PDA WGS blood_normal CPT0094020002 CPT0094020002.WholeGenome.RP-1303.bam 56277336639 BAM aligned CPTAC3 dfbf4470-dc54-48fd-a456-f4cc7ec5f380 d25146717677ed156183b4927136d42e {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01166.WGS.N.hg38 C3N-01166 PDA WGS blood_normal CPT0094020002 5f0475ea-0fad-44a4-a58b-24fe7c42a5db_wgs_gdc_realn.bam 82827610347 BAM harmonized CPTAC3 d39d185f-cf9e-45b1-9554-23ad6aafbefa 0129d9db39e64780f4282420825e2c29 {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01166.WXS.N C3N-01166 PDA WXS blood_normal CPT0094020002 CPT0094020002.WholeExome.RP-1303.bam 32894976633 BAM aligned CPTAC3 6ea50057-db7f-4933-a81a-4b0a1316d037 23555ff9fd75ce3fc3f626ecf80eb1ed {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01166.WXS.N.hg38 C3N-01166 PDA WXS blood_normal CPT0094020002 5f0475ea-0fad-44a4-a58b-24fe7c42a5db_wxs_gdc_realn.bam 45184969148 BAM harmonized CPTAC3 2b850ddd-a757-4ecd-9d62-ac9edefe81f6 0cbe5c2bb3788068c79a0c1723cb8148 {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01166.WXS.T C3N-01166 PDA WXS tumor CPT0093980010_1 CPT0093980010_1.WholeExome.RP-1303.bam 60509097929 BAM aligned CPTAC3 dd59f417-041e-4dea-ba89-d1b8d3f1e427 7178af8fc6ca5576117601ac28692289 {"aliquot_tag": "ALQ_f9208bd9", "gdc_sample_type": "Primary Tumor"} -C3N-01166.WXS.T.hg38 C3N-01166 PDA WXS tumor CPT0093980010_1 061cfc9d-8a34-4f3a-a9e8-c5d5720a4e35_wxs_gdc_realn.bam 83359073550 BAM harmonized CPTAC3 f8221c13-80fb-413a-976e-4efaaf8c419b da4a42ca30cc9076d6a2d5e4ff06d306 {"aliquot_tag": "ALQ_f9208bd9", "gdc_sample_type": "Primary Tumor"} -C3N-01167.ADD_f6ddabab.MethArray.Green.T C3N-01167 PDA Methylation_Array tumor CPT0087890010 202184900110_R04C01_Grn.idat 13676256 IDAT Green NA CPTAC3 b21e4860-95ff-4ca0-9ec6-6b6c922ff476 439a4d0c25659ebd1e67295e9493d51a {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01167.ADD_f6ddabab.MethArray.Red.T C3N-01167 PDA Methylation_Array tumor CPT0087890010 202184900110_R04C01_Red.idat 13676256 IDAT Red NA CPTAC3 04d9045e-ee0e-45ba-b936-893433c0beaa 3df10965e99ba4fe57ff0b4b8425827d {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01167.ADD_f6ddabab.WGS.T C3N-01167 PDA WGS tumor CPT0087890010 CPT0087890010.WholeGenome.RP-1303.bam 63132249675 BAM aligned CPTAC3 89a0c33f-5a3a-42fc-a1aa-b418c1b09ba3 1c561ef743ee2259ffac374279b77b9c {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01167.ADD_f6ddabab.WGS.T.hg38 C3N-01167 PDA WGS tumor CPT0087890010 159f535d-6784-4b18-9307-baca63090431_gdc_realn.bam 93612947908 BAM harmonized CPTAC3 81127181-3b1d-41ee-9d65-e51e2a94c936 edfe20bbbf735f3f76a3e854c8262a8f {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01167.ADD_f6ddabab.WXS.T C3N-01167 PDA WXS tumor CPT0087890010 CPT0087890010.WholeExome.RP-1303.bam 49551655732 BAM aligned CPTAC3 0b8ae712-2186-4eaf-8749-8cd09b52e852 78de9e762af9e5ab8519a87593a861af {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01167.ADD_f6ddabab.WXS.T.hg38 C3N-01167 PDA WXS tumor CPT0087890010 159f535d-6784-4b18-9307-baca63090431_gdc_realn.bam 67994161946 BAM harmonized CPTAC3 7f03b83b-b345-4dab-a24f-1ba214d4ff76 7f5d788e7bd61dc9fbc306b4f9b003e7 {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01167.miRNA-Seq.S17_L008_R1.T C3N-01167 PDA miRNA-Seq tumor CPT0087890007 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L008_R1_001.unaln.bam 254119241 BAM S17_L008_R1 unaligned CPTAC3 f5f8d15c-628d-4195-a6f6-26f09564156f 142fd8d5d61246976ecffccd90ef15fb {"aliquot_tag": "ALQ_71a20f49", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01167.miRNA-Seq.T.hg38 C3N-01167 PDA miRNA-Seq tumor CPT0087890007 41130c6f-2b96-4a59-b925-231a2ff55578_mirnaseq_gdc_realn.bam 279684342 BAM harmonized CPTAC3 4cbb6a21-b1d0-4c5c-a31d-2c833a0d586d b2ff3937436431ba9312731d232444ad {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor"} -C3N-01167.RNA-Seq.chimeric.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.chimeric.gdc_realn.bam 37836818 BAM chimeric harmonized CPTAC3 611ad181-3885-43ef-8330-7b72a8d8696d de939ef02356293e3a0d5169d097fdff {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor"} -C3N-01167.RNA-Seq.genomic.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.genomic.gdc_realn.bam 8552523706 BAM genomic harmonized CPTAC3 2e35de5f-e2a5-4256-8c73-fda4e4eb0fd7 5d840585444f88db5cb0cdfec3981c0f {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor"} -C3N-01167.RNA-Seq.S4_L005_R1.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R1_001.fastq.gz 4560010112 FASTQ S4_L005_R1 unaligned CPTAC3 e94a5181-c7d1-401a-a4de-db98f6f1c368 a7de553c932fc4b29f8bee24f4fb4aef {"aliquot_tag": "ALQ_71a20f49", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01167.RNA-Seq.S4_L005_R2.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R2_001.fastq.gz 4817365384 FASTQ S4_L005_R2 unaligned CPTAC3 9f7a6bd7-14ee-42df-9f88-f608fea0a6a4 748abd6b143d4a87d25f9bdee8ad4a1d {"aliquot_tag": "ALQ_71a20f49", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01167.RNA-Seq.transcriptome.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.transcriptome.gdc_realn.bam 13300857011 BAM transcriptome harmonized CPTAC3 60ede535-53be-4463-839f-5b056cff19d4 e37ab489fb676655e1d62cee64cd76ed {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor"} -C3N-01167.WGS.N C3N-01167 PDA WGS blood_normal CPT0087930002 CPT0087930002.WholeGenome.RP-1303.bam 69761664267 BAM aligned CPTAC3 48b529e9-a947-41b1-8a44-fb8dd09b3acd a02a2cd7d3136612ee9eebe1f41dc84b {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01167.WGS.N.hg38 C3N-01167 PDA WGS blood_normal CPT0087930002 c47a5d49-b24b-412d-824f-21f836a59334_gdc_realn.bam 105720714327 BAM harmonized CPTAC3 b502d545-01f9-4dda-9d83-a66f7813fd85 d5ba1ccb60c54543467f2482671d5319 {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01167.WXS.N C3N-01167 PDA WXS blood_normal CPT0087930002 CPT0087930002.WholeExome.RP-1303.bam 26889298256 BAM aligned CPTAC3 f7b62e25-0126-4e47-929a-7c8a074cfaa4 be043307858c4225f1c9fa600fe8fde6 {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01167.WXS.N.hg38 C3N-01167 PDA WXS blood_normal CPT0087930002 c47a5d49-b24b-412d-824f-21f836a59334_gdc_realn.bam 36278982609 BAM harmonized CPTAC3 ffd844ae-0ab6-4ca7-bdca-32dca76c68fd d4a5401c45a6b9aedd6dc3f4db9b5057 {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01167.WXS.T C3N-01167 PDA WXS tumor CPT0087890010_1 CPT0087890010_1.WholeExome.RP-1303.bam 73438659348 BAM aligned CPTAC3 cdfb7a9e-276d-480c-8897-24362c7fd8a7 2c78f94786aad720a4df3c44e460f8ed {"aliquot_tag": "ALQ_21d3bac1", "gdc_sample_type": "Primary Tumor"} -C3N-01167.WXS.T.hg38 C3N-01167 PDA WXS tumor CPT0087890010_1 0924992b-9855-45ac-afad-78328b72b3bf_wxs_gdc_realn.bam 100546528763 BAM harmonized CPTAC3 36226d14-d333-4dda-b678-14d83fc075eb a88e94fb8db63bbe0700bfb32c327971 {"aliquot_tag": "ALQ_21d3bac1", "gdc_sample_type": "Primary Tumor"} -C3N-01168.ADD_cdbba281.MethArray.Green.T C3N-01168 PDA Methylation_Array tumor CPT0094030009 202234370079_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 affc4be9-7fab-49e4-9127-bb093b757b3a 78afb7104e79323ceef8edace1008678 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01168.ADD_cdbba281.MethArray.Red.T C3N-01168 PDA Methylation_Array tumor CPT0094030009 202234370079_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 c3226a70-61f5-498c-b4dc-cc996fdf50ce 5a80d00e85373307b76870c0c7ad461c {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01168.ADD_cdbba281.WGS.T C3N-01168 PDA WGS tumor CPT0094030009 CPT0094030009.WholeGenome.RP-1303.bam 64991506561 BAM aligned CPTAC3 74920372-6abd-4999-842f-17df3f1e6b2c 51488b271a201f5e9c7cae0c94ebd9e1 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01168.ADD_cdbba281.WGS.T.hg38 C3N-01168 PDA WGS tumor CPT0094030009 ca8a6fce-c36c-45f5-95cb-fabf8a388422_wgs_gdc_realn.bam 96276758747 BAM harmonized CPTAC3 6bc87e89-0d51-452d-80d9-c186f04fb3a1 e05314b0c501ce15f2a7fff7d9807a04 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01168.ADD_cdbba281.WXS.T C3N-01168 PDA WXS tumor CPT0094030009 CPT0094030009.WholeExome.RP-1303.bam 39239567497 BAM aligned CPTAC3 a4c3da54-df24-4dac-abb7-fda9fe6eb476 ac3edda0deb80afabdaba11bbed04bf0 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01168.ADD_cdbba281.WXS.T.hg38 C3N-01168 PDA WXS tumor CPT0094030009 ca8a6fce-c36c-45f5-95cb-fabf8a388422_wxs_gdc_realn.bam 54439650740 BAM harmonized CPTAC3 562c6109-4681-450a-b982-cf0c46ffce63 7dfebb27e3832cbe06fc8255a6de8c56 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01168.miRNA-Seq.S42_L007_R1.T C3N-01168 PDA miRNA-Seq tumor CPT0094030006 180828_UNC32-K00270_0112_AHWTLNBBXX_CCAACA_S42_L007_R1_001.unaln.bam 238879218 BAM S42_L007_R1 unaligned CPTAC3 2135e2ed-9156-44ab-9757-e1644237e949 2b0376a59d7d7091f1e377ffbe377ee8 {"aliquot_tag": "ALQ_5d04bf10", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01168.miRNA-Seq.T.hg38 C3N-01168 PDA miRNA-Seq tumor CPT0094030006 47cbc7a6-d354-483d-a044-5a02bdb74cf4_mirnaseq_gdc_realn.bam 266021926 BAM harmonized CPTAC3 c238c28c-1a51-4f10-9d66-3e7c7e28d9b0 960ffc574b3348391db4ba89365dafb0 {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor"} -C3N-01168.RNA-Seq.chimeric.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.chimeric.gdc_realn.bam 28366810 BAM chimeric harmonized CPTAC3 017d3e59-b4bd-41dd-b85d-69ea799aea91 29c486b3239697ff08a7ebff9b6c129c {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor"} -C3N-01168.RNA-Seq.genomic.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.genomic.gdc_realn.bam 8665657351 BAM genomic harmonized CPTAC3 2c3accf2-001f-49eb-8693-66d73293c95a 2fd8890f9975c26a9f4c4eeb1f24a1e4 {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor"} -C3N-01168.RNA-Seq.S7_L002_R1.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3919471422 FASTQ S7_L002_R1 unaligned CPTAC3 37b2dbf1-2785-4b4d-b38d-8a84fd9c0a66 f8c93717a1e904ccb3e115ffe0afef2a {"aliquot_tag": "ALQ_5d04bf10", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01168.RNA-Seq.S7_L002_R2.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4224130212 FASTQ S7_L002_R2 unaligned CPTAC3 a382af42-66b1-4e2d-a90d-f8548c169d98 2f1d606d07d802333bf3a78ed78836fe {"aliquot_tag": "ALQ_5d04bf10", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01168.RNA-Seq.transcriptome.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.transcriptome.gdc_realn.bam 10802979507 BAM transcriptome harmonized CPTAC3 065bd566-61df-4410-9844-d32748a0b8b2 9af788ca266980a3cb408887c31f6e35 {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor"} -C3N-01168.WGS.N C3N-01168 PDA WGS blood_normal CPT0094070002 CPT0094070002.WholeGenome.RP-1303.bam 69357858638 BAM aligned CPTAC3 6f117e25-801c-4d02-8a66-065d3e575ed2 7ffd583136695611d05a6b92d233411e {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01168.WGS.N.hg38 C3N-01168 PDA WGS blood_normal CPT0094070002 d3480ad0-6349-44d9-8329-e0a60e2bf8a8_wgs_gdc_realn.bam 101831517163 BAM harmonized CPTAC3 d10bde0c-495c-4b54-8b2d-a0bef5483ee9 19dce619e920b3233dbc2516559ceae4 {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01168.WXS.N C3N-01168 PDA WXS blood_normal CPT0094070002 CPT0094070002.WholeExome.RP-1303.bam 29077544359 BAM aligned CPTAC3 8c47b045-b4de-490c-a183-c900c967140a 3e0e509afe8bcb632c982b89c63a6893 {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01168.WXS.N.hg38 C3N-01168 PDA WXS blood_normal CPT0094070002 d3480ad0-6349-44d9-8329-e0a60e2bf8a8_wxs_gdc_realn.bam 39952170860 BAM harmonized CPTAC3 a3bca5bf-5171-486b-ab6a-e8ab097b746f 74076f298445c84f0219f21b1443b905 {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01168.WXS.T C3N-01168 PDA WXS tumor CPT0094030009_1 CPT0094030009_1.WholeExome.RP-1303.bam 73911542690 BAM aligned CPTAC3 b75873e4-d7b2-4e0a-8544-abef8934788e bce3c8f72f85adb28bc6cf51540972cf {"aliquot_tag": "ALQ_3764f52b", "gdc_sample_type": "Primary Tumor"} -C3N-01168.WXS.T.hg38 C3N-01168 PDA WXS tumor CPT0094030009_1 714bd893-759d-4fc2-916e-50538e843845_wxs_gdc_realn.bam 101689106154 BAM harmonized CPTAC3 99d3d536-08bf-4e9e-875d-62e43e0ab7e0 91c436af7de397baafb3138bc4c7a30c {"aliquot_tag": "ALQ_3764f52b", "gdc_sample_type": "Primary Tumor"} -C3N-01169.ADD_daac1a75.MethArray.Green.T C3N-01169 PDA Methylation_Array tumor CPT0094080010 202234380024_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1fa21d3b-2bf0-49e7-99cd-da3e15798d66 4b460bdba0a6b11bba369e58afbdcf01 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01169.ADD_daac1a75.MethArray.Red.T C3N-01169 PDA Methylation_Array tumor CPT0094080010 202234380024_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 cb7c33a9-4017-4e5c-9318-4ec3c91d7a27 9f3a7851cc3458294111f7c04053d0c1 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01169.ADD_daac1a75.WGS.T C3N-01169 PDA WGS tumor CPT0094080010 CPT0094080010.WholeGenome.RP-1303.bam 128041173351 BAM aligned CPTAC3 9688ca54-5be3-4e0c-90d2-9cfaf8be7487 2566c15390e2d213044f87fc371d3bf7 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01169.ADD_daac1a75.WGS.T.hg38 C3N-01169 PDA WGS tumor CPT0094080010 a011807b-3bde-4f2c-a905-84863cb877a3_wgs_gdc_realn.bam 185446057812 BAM harmonized CPTAC3 0aea19fa-217b-4929-9413-d6bbc96f53df 8015ce1d9125271b844073ae7d57e962 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01169.ADD_daac1a75.WXS.T C3N-01169 PDA WXS tumor CPT0094080010 CPT0094080010.WholeExome.RP-1303.bam 39361221345 BAM aligned CPTAC3 c2b594a4-88d9-4537-b3b1-c6eb02b295de 25ceb4bfcc50f7a7c53abb31419af7c5 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01169.ADD_daac1a75.WXS.T.hg38 C3N-01169 PDA WXS tumor CPT0094080010 a011807b-3bde-4f2c-a905-84863cb877a3_wxs_gdc_realn.bam 54937541768 BAM harmonized CPTAC3 e97151dd-2971-46dd-9425-a01b0a94d11f 3bd969cc930026f67ccf0a4053b4e1c6 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01169.miRNA-Seq.S43_L007_R1.T C3N-01169 PDA miRNA-Seq tumor CPT0094080007 180828_UNC32-K00270_0112_AHWTLNBBXX_CGGAAT_S43_L007_R1_001.unaln.bam 332715692 BAM S43_L007_R1 unaligned CPTAC3 05341272-cc50-4983-9049-6f4f3adab8b3 7585837be3f7397033bc07ed4c9a2ded {"aliquot_tag": "ALQ_5dd3be97", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01169.miRNA-Seq.T.hg38 C3N-01169 PDA miRNA-Seq tumor CPT0094080007 69fa27fe-9baa-4599-9490-8c89ec48dcf3_mirnaseq_gdc_realn.bam 371346861 BAM harmonized CPTAC3 7c3967af-b323-4b32-b260-7d807965857b 75b7685cb199957a2c1ccee67b4131fe {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor"} -C3N-01169.RNA-Seq.chimeric.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.chimeric.gdc_realn.bam 33604460 BAM chimeric harmonized CPTAC3 9784e6da-4da4-45ab-b99a-71f3e2158857 a40f5552ed648935122faf647558dda2 {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor"} -C3N-01169.RNA-Seq.genomic.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.genomic.gdc_realn.bam 9847831779 BAM genomic harmonized CPTAC3 ad12f603-a119-4962-9461-2bef8380c450 03138b9c449342ce6800753e50843898 {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor"} -C3N-01169.RNA-Seq.S3_L001_R1.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 4336908193 FASTQ S3_L001_R1 unaligned CPTAC3 3df22693-51a4-42aa-b67b-7d2ffccdc2af 07d3b5c75bbe9c1bbf6648c812efe760 {"aliquot_tag": "ALQ_5dd3be97", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01169.RNA-Seq.S3_L001_R2.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 4605952804 FASTQ S3_L001_R2 unaligned CPTAC3 768cd08d-2cd7-4826-8f30-43c739f3894d 4d2ad9d6a9d086ae058f62535616c2a2 {"aliquot_tag": "ALQ_5dd3be97", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01169.RNA-Seq.transcriptome.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.transcriptome.gdc_realn.bam 10970232135 BAM transcriptome harmonized CPTAC3 d343273f-7f28-450b-827d-3a91e011737a 3307b05220d5f2257e5ad51016c283ff {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor"} -C3N-01169.WGS.N C3N-01169 PDA WGS blood_normal CPT0094120002 CPT0094120002.WholeGenome.RP-1303.bam 64766660666 BAM aligned CPTAC3 35cdbd74-c098-4c94-b1bd-4d3fb014ef3a 42a7f644578cf43b84d6f4c16e309143 {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01169.WGS.N.hg38 C3N-01169 PDA WGS blood_normal CPT0094120002 6c765351-e5e5-4a8a-8ab6-9f73805f2105_wgs_gdc_realn.bam 94529824896 BAM harmonized CPTAC3 63b1585a-f981-4312-8d8d-4c9f7756afad 726eb433d8668c5f6e023fdc74592e9d {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01169.WXS.N C3N-01169 PDA WXS blood_normal CPT0094120002 CPT0094120002.WholeExome.RP-1303.bam 31812142414 BAM aligned CPTAC3 1f4efc95-58c3-4022-8abb-3928e239e26e f9a4efbd77c15abe89d5159d48ccbffa {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01169.WXS.N.hg38 C3N-01169 PDA WXS blood_normal CPT0094120002 6c765351-e5e5-4a8a-8ab6-9f73805f2105_wxs_gdc_realn.bam 43129814641 BAM harmonized CPTAC3 39db50ed-a362-4bed-9669-1d5afd4aaf45 5a67b118d03a2628bc52aa2b6c3d8419 {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01169.WXS.T C3N-01169 PDA WXS tumor CPT0094080010_1 CPT0094080010_1.WholeExome.RP-1303.bam 64278535243 BAM aligned CPTAC3 414d2442-e4e5-4ccf-a665-00b624801fa1 4e994d5cd77b3d89fecd6f1764aa1405 {"aliquot_tag": "ALQ_820efd3b", "gdc_sample_type": "Primary Tumor"} -C3N-01169.WXS.T.hg38 C3N-01169 PDA WXS tumor CPT0094080010_1 5f2df483-39d3-4424-9391-e48b972eed39_wxs_gdc_realn.bam 89047991920 BAM harmonized CPTAC3 3a56ebab-1d20-4417-a1e6-a3c777079e7a 8ffe21d411ec0db682d8f057ff0688b0 {"aliquot_tag": "ALQ_820efd3b", "gdc_sample_type": "Primary Tumor"} -C3N-01171.MethArray.Green.T C3N-01171 UCEC Methylation_Array tumor CPT0095190009 202234380017_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0b94642b-47ea-4803-95b0-96218321b289 5ed3b656dea823cd34774e1aee6f08c4 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor"} -C3N-01171.MethArray.Red.T C3N-01171 UCEC Methylation_Array tumor CPT0095190009 202234380017_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 bd99f0f7-fd36-41ff-b4e2-bf27cff64241 a0ee66cf3702fcde7fbeb85adeec4023 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor"} -C3N-01171.miRNA-Seq.S44_L007_R1.T C3N-01171 UCEC miRNA-Seq tumor CPT0095190006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTAGCT_S44_L007_R1_001.unaln.bam 245716367 BAM S44_L007_R1 unaligned CPTAC3 8a3fd642-db93-40bf-a631-4396681f7316 882e0de7321721737af59b9d2984886c {"aliquot_tag": "ALQ_7a9f7fa0", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01171.miRNA-Seq.T.hg38 C3N-01171 UCEC miRNA-Seq tumor CPT0095190006 dc19bb6a-479b-4caf-939e-40059bcfacdc_mirnaseq_gdc_realn.bam 279102887 BAM harmonized CPTAC3 74c08b1f-0a62-4a49-a7ba-697ecfb0e84b e14c5f18e07015c2e6f36559ec3cf936 {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.chimeric.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.chimeric.gdc_realn.bam 36417577 BAM chimeric harmonized CPTAC3 77e58d43-9d37-41f2-8bb3-a0add571e1f2 fecf16f5eb2bd6868274a809fbe19d2a {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.chimeric.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.chimeric.gdc_realn.bam 474798938 BAM chimeric harmonized CPTAC3 3b2bce24-b57d-497d-b2f3-363a2373ee6c 36928c5cd2db39bdf9cecc7828460b54 {"aliquot_tag": "ALQ_ff7a2c9e", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.genomic.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.genomic.gdc_realn.bam 9222356661 BAM genomic harmonized CPTAC3 ec0abd96-1527-4060-b13a-ad0cc086c749 737bb23374c0084e96220043281cf521 {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.genomic.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.genomic.gdc_realn.bam 23678612651 BAM genomic harmonized CPTAC3 ff750a67-4c11-4005-9adc-3baca6a2a0e3 ded33a392829cf29d9293467085d3f00 {"aliquot_tag": "ALQ_ff7a2c9e", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.S2_L001_R1.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R1_001.fastq.gz 4334441749 FASTQ S2_L001_R1 unaligned CPTAC3 46e98647-28dd-4501-970b-7f8cc6d5cdc0 f692538f06952d6545c7e28358954b0a {"aliquot_tag": "ALQ_7a9f7fa0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.S2_L001_R2.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R2_001.fastq.gz 4609243257 FASTQ S2_L001_R2 unaligned CPTAC3 28a61edc-3fbd-4df6-954d-aa3ef9693d0d bbbf1f2571c737d5f3af3cf72550e2ea {"aliquot_tag": "ALQ_7a9f7fa0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.S81_R1.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R1_001.fastq.gz 15438164232 FASTQ S81_R1 unaligned CPTAC3 0ea16774-4576-4e76-82cc-9ea47d90173d bdd2d4c1f9639e39e1ecdbc97c1b86ab {"aliquot_tag": "ALQ_ff7a2c9e", "sample": "S81", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.S81_R2.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R2_001.fastq.gz 16172707576 FASTQ S81_R2 unaligned CPTAC3 e294c843-9f7f-4411-8c5b-a5ee671142f1 55d71ef7ee7866dff0562adb8955a816 {"aliquot_tag": "ALQ_ff7a2c9e", "sample": "S81", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.transcriptome.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.transcriptome.gdc_realn.bam 9209285299 BAM transcriptome harmonized CPTAC3 b34b53f0-589f-495f-91f6-d6b74e2e12d5 6664df182cbc4d12cb141b2424fe147b {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor"} -C3N-01171.RNA-Seq.transcriptome.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.transcriptome.gdc_realn.bam 13929541193 BAM transcriptome harmonized CPTAC3 b6c40268-b440-4942-b201-b166cd41541d 2d2df164d1fc46e999b42d4da4cc700a {"aliquot_tag": "ALQ_ff7a2c9e", "gdc_sample_type": "Primary Tumor"} -C3N-01171.WGS.N C3N-01171 UCEC WGS blood_normal CPT0095220002 CPT0095220002.WholeGenome.RP-1303.bam 59761332004 BAM aligned CPTAC3 dc132e6c-b623-4d4f-afc2-63e600379391 23d36c3ec1fe5e809c7c4c2b6e0fed67 {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal"} -C3N-01171.WGS.N.hg38 C3N-01171 UCEC WGS blood_normal CPT0095220002 1fa4348c-ccab-4616-8cc2-4a122b2f1d60_wgs_gdc_realn.bam 87176824444 BAM harmonized CPTAC3 e1c57884-38c5-4044-8614-bee9ac875ffd 801f873abbf0a85b45645bd8de216e50 {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal"} -C3N-01171.WGS.T C3N-01171 UCEC WGS tumor CPT0095190009 CPT0095190009.WholeGenome.RP-1303.bam 67039416584 BAM aligned CPTAC3 dab31bc6-b53f-4789-8551-f55541c4cf3a 4b790889edbc1950caf9812618fab6b6 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor"} -C3N-01171.WGS.T.hg38 C3N-01171 UCEC WGS tumor CPT0095190009 b4c9a22c-71ce-455b-9b04-0f90f3f02572_wgs_gdc_realn.bam 96932320271 BAM harmonized CPTAC3 0e5e724b-b785-496d-9a76-ccd1f353915c b979ae22f4e2c62af0534e5db895a55f {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor"} -C3N-01171.WXS.N C3N-01171 UCEC WXS blood_normal CPT0095220002 CPT0095220002.WholeExome.RP-1303.bam 37294440731 BAM aligned CPTAC3 91f978c3-3a79-4cf4-a1fb-dcbd3a0fa816 f6ab1e8b6cb68888a45a620e41d8b017 {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal"} -C3N-01171.WXS.N.hg38 C3N-01171 UCEC WXS blood_normal CPT0095220002 1fa4348c-ccab-4616-8cc2-4a122b2f1d60_wxs_gdc_realn.bam 51872707006 BAM harmonized CPTAC3 2eb30ba6-2c7b-42d9-97ca-cf5e5c647b3d 6f315ad11178fff8c7160d3134e4158e {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal"} -C3N-01171.WXS.T C3N-01171 UCEC WXS tumor CPT0095190009 CPT0095190009.WholeExome.RP-1303.bam 35858043711 BAM aligned CPTAC3 2b1bbe18-55ed-41a6-992c-15d4bfd8dd55 0ffda3bda7c4344f24b91b9f46afb47c {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor"} -C3N-01171.WXS.T.hg38 C3N-01171 UCEC WXS tumor CPT0095190009 b4c9a22c-71ce-455b-9b04-0f90f3f02572_wxs_gdc_realn.bam 49250192374 BAM harmonized CPTAC3 6bd1656a-45f4-420f-9ff5-bd2170d5385f e09b42f763ede6b601903d33602a1b63 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor"} -C3N-01172.MethArray.Green.T C3N-01172 UCEC Methylation_Array tumor CPT0095230009 202234380017_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 806a436a-a807-4539-a295-83de64dab0b7 750b44f78f9aaf03be21081316e2eb30 {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor"} -C3N-01172.MethArray.Red.T C3N-01172 UCEC Methylation_Array tumor CPT0095230009 202234380017_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3e50e43f-0a5f-4b94-9989-02d20596c0dd d7708a0796709a4c01ecea5ab992ffaa {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor"} -C3N-01172.miRNA-Seq.S45_L007_R1.T C3N-01172 UCEC miRNA-Seq tumor CPT0095230006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTATAC_S45_L007_R1_001.unaln.bam 212183674 BAM S45_L007_R1 unaligned CPTAC3 52b33b31-8083-4ce2-b787-53606d107c2f cde7d4791549b45d125d3abe0c4c2fbe {"aliquot_tag": "ALQ_b6bb15af", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01172.miRNA-Seq.T.hg38 C3N-01172 UCEC miRNA-Seq tumor CPT0095230006 ce963034-b30d-4fa2-86fe-0e64aa62ae05_mirnaseq_gdc_realn.bam 247786971 BAM harmonized CPTAC3 2f50cbcf-3fe9-40b9-a5a4-064fda4c27ba bff1164738d724dc662296a403ade66d {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor"} -C3N-01172.RNA-Seq.chimeric.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.chimeric.gdc_realn.bam 27245822 BAM chimeric harmonized CPTAC3 f660e99f-11ef-478e-808d-c1c5540068a8 6898d19b1e3de5cab90c515dddefdbf3 {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor"} -C3N-01172.RNA-Seq.genomic.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.genomic.gdc_realn.bam 6890412680 BAM genomic harmonized CPTAC3 8d48262f-6f3e-4fb9-92d5-01d80360fff4 1c24f5cd0ae68bb37502c76e3da185e6 {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor"} -C3N-01172.RNA-Seq.S1_L001_R1.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R1_001.fastq.gz 3421852260 FASTQ S1_L001_R1 unaligned CPTAC3 7a5331d9-0936-4443-bf80-acef02f0cde6 bd203b7f3955752f57776c724c673947 {"aliquot_tag": "ALQ_b6bb15af", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01172.RNA-Seq.S1_L001_R2.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R2_001.fastq.gz 3649082566 FASTQ S1_L001_R2 unaligned CPTAC3 628d2b64-f95c-4bd9-8646-95ed83a138d2 66fb5cc20e6ae45657353bc5c82cf640 {"aliquot_tag": "ALQ_b6bb15af", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01172.RNA-Seq.transcriptome.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.transcriptome.gdc_realn.bam 9423856217 BAM transcriptome harmonized CPTAC3 67222c07-e003-46e6-b572-3b1a76892457 693273084491654a9912d134b6e37d91 {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor"} -C3N-01172.WGS.N C3N-01172 UCEC WGS blood_normal CPT0095270002 CPT0095270002.WholeGenome.RP-1303.bam 58504533471 BAM aligned CPTAC3 4f87086c-d213-4806-a7e5-c5d91528e1f2 51ef7717348fbc32374c3be3c2c51e8b {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal"} -C3N-01172.WGS.N.hg38 C3N-01172 UCEC WGS blood_normal CPT0095270002 09a88bc6-09d4-4097-b86e-94b2958939e0_wgs_gdc_realn.bam 85850878667 BAM harmonized CPTAC3 b26ae84c-2a46-4bd5-9b0a-9519d8fb5b78 d5256de0a666ea7d11e5c8bc85ff20f2 {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal"} -C3N-01172.WGS.T C3N-01172 UCEC WGS tumor CPT0095230009 CPT0095230009.WholeGenome.RP-1303.bam 57901515111 BAM aligned CPTAC3 ce70e9fc-ce84-4ed1-b46a-cde1a8768188 8c00b2b7a3180ab4a7e96a38f7e4230e {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor"} -C3N-01172.WGS.T.hg38 C3N-01172 UCEC WGS tumor CPT0095230009 f42c4a32-2a09-4d4d-8c69-ca0eabf84785_wgs_gdc_realn.bam 86050596761 BAM harmonized CPTAC3 6f997690-bb63-41f7-8fae-1cbd573afddc b6df8d6776aa42a86ecdf735f0974b25 {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor"} -C3N-01172.WXS.N C3N-01172 UCEC WXS blood_normal CPT0095270002 CPT0095270002.WholeExome.RP-1303.bam 41772783343 BAM aligned CPTAC3 7c1067eb-c0e3-43ef-9032-d4691e008370 caba7c79c2a918cd0924a9f1414edb82 {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal"} -C3N-01172.WXS.N.hg38 C3N-01172 UCEC WXS blood_normal CPT0095270002 09a88bc6-09d4-4097-b86e-94b2958939e0_wxs_gdc_realn.bam 57878520242 BAM harmonized CPTAC3 af010c87-0341-4e37-ba86-c523e5d3a362 47864944c2e4200276c5f4586dcd1166 {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal"} -C3N-01172.WXS.T C3N-01172 UCEC WXS tumor CPT0095230009 CPT0095230009.WholeExome.RP-1303.bam 23718413039 BAM aligned CPTAC3 089eb676-0cdf-4460-925d-82671855b5a5 39ea42247b19caf9a4fabddafa36325e {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor"} -C3N-01172.WXS.T.hg38 C3N-01172 UCEC WXS tumor CPT0095230009 f42c4a32-2a09-4d4d-8c69-ca0eabf84785_wxs_gdc_realn.bam 32794011909 BAM harmonized CPTAC3 a43f5828-4153-43ce-9f17-d1f70e4f93e0 3465a7785fb03e599a4e2b2c2dc3050c {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor"} -C3N-01175.MethArray.Green.A C3N-01175 CCRCC Methylation_Array tissue_normal CPT0078670009 204930630081_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e49ddf97-4fd2-44a0-bef6-3d70046c067a 7a9cb77a6dc8993c8233ea111e65cbf5 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.MethArray.Green.T C3N-01175 CCRCC Methylation_Array tumor CPT0078660009 202176290047_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d5525d34-f972-4bc2-aca4-136a9d3471c9 f4d76861abd7bf3488b45b3d951a8084 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor"} -C3N-01175.MethArray.Red.A C3N-01175 CCRCC Methylation_Array tissue_normal CPT0078670009 204930630081_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 21a5e35d-a80c-4243-8a3b-adb555e4e90f c3b364a730efbe1e51ea39cac2094933 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.MethArray.Red.T C3N-01175 CCRCC Methylation_Array tumor CPT0078660009 202176290047_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 d87be60d-9b22-4d2a-b296-e3ff3721f244 db605286559ec4c0d38e8b6ff009a3af {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor"} -C3N-01175.miRNA-Seq.A.hg38 C3N-01175 CCRCC miRNA-Seq tissue_normal CPT0078670006 7592f7bd-bdf0-4479-a114-85eccb6b33ef_mirnaseq_gdc_realn.bam 210172758 BAM harmonized CPTAC3 8fb37c86-54a9-45de-8149-4c70cfe2f0d7 8c3b3f814e8b4f777736aa96dc65bce7 {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.miRNA-Seq.S15_L008_R1.T C3N-01175 CCRCC miRNA-Seq tumor CPT0078660006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L008_R1_001.unaln.bam 181371223 BAM S15_L008_R1 unaligned CPTAC3 1cf4dbc7-b615-4c4f-a967-31eb45b37d11 4f3d9f758d79c2bffd81d18f8ebc87b5 {"aliquot_tag": "ALQ_9197ab3b", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01175.miRNA-Seq.S22_L003_R1.A C3N-01175 CCRCC miRNA-Seq tissue_normal CPT0078670006 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L003_R1_001.unaln.bam 188848552 BAM S22_L003_R1 unaligned CPTAC3 6867a9b5-f43e-4fea-8fec-f364fa599058 d3466dac0bd6dc77c73b0cfee023238d {"aliquot_tag": "ALQ_acf7828b", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.miRNA-Seq.T.hg38 C3N-01175 CCRCC miRNA-Seq tumor CPT0078660006 eb3ed157-ac9f-49d0-a12c-3cf1193e855b_mirnaseq_gdc_realn.bam 204043866 BAM harmonized CPTAC3 3515ff66-6af0-4f51-b7b7-a2c6c7f36c76 0ab5d4085abcb501fb6b2c9f6950c551 {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor"} -C3N-01175.RNA-Seq.chimeric.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.chimeric.gdc_realn.bam 65966657 BAM chimeric harmonized CPTAC3 5904c32e-2d3d-44d7-a2b0-ed4387010f9a c370e7e7d7dec41a602389df99847407 {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.RNA-Seq.chimeric.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.chimeric.gdc_realn.bam 119177933 BAM chimeric harmonized CPTAC3 6543c7c4-ba1c-42cf-8c4b-bf2901644aed f92fd4d093c27963b973df0e86d13a59 {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor"} -C3N-01175.RNA-Seq.genomic.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.genomic.gdc_realn.bam 8368693323 BAM genomic harmonized CPTAC3 3bcd337e-96f3-4f41-a57c-e5a6aecfebd4 becf626f394af0c3f42f8c3119d2c79d {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.RNA-Seq.genomic.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.genomic.gdc_realn.bam 7738605307 BAM genomic harmonized CPTAC3 353ec31f-96f9-46d2-9610-05f42222ba20 3c8e6732eb81145c391182b2c1819297 {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor"} -C3N-01175.RNA-Seq.S19_L006_R1.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R1_001.fastq.gz 3809003730 FASTQ S19_L006_R1 unaligned CPTAC3 25595679-20dc-49bd-add0-3c0327def3ae ba378d3dc0222e5aafbf2dc6a8809b45 {"aliquot_tag": "ALQ_9197ab3b", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01175.RNA-Seq.S19_L006_R2.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R2_001.fastq.gz 3996118521 FASTQ S19_L006_R2 unaligned CPTAC3 8524e1fc-ec06-4a66-9a6d-7c407fc2de99 330ce0c0f139a7403239214a6913ae90 {"aliquot_tag": "ALQ_9197ab3b", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01175.RNA-Seq.S7_L002_R1.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R1_001.fastq.gz 4089472462 FASTQ S7_L002_R1 unaligned CPTAC3 e1b2ac07-f41e-4528-96a5-b5e2ff02db63 377a82d484dc905054e5f53e61057aa3 {"aliquot_tag": "ALQ_acf7828b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.RNA-Seq.S7_L002_R2.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R2_001.fastq.gz 4476617257 FASTQ S7_L002_R2 unaligned CPTAC3 a66289db-08b0-475a-b7ec-0c456d884a3e 68cee88f90a7d90ac3f8533091e5a40f {"aliquot_tag": "ALQ_acf7828b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.RNA-Seq.transcriptome.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.transcriptome.gdc_realn.bam 10389303362 BAM transcriptome harmonized CPTAC3 34a3b353-c2d1-4f32-9645-8461867363dd 9d3f268c0cb74e645a5565a94913da88 {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.RNA-Seq.transcriptome.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.transcriptome.gdc_realn.bam 10580792604 BAM transcriptome harmonized CPTAC3 b1a7a8f2-3ec9-40aa-a806-eb67690739c1 5bf8df6be5edb95ef47c40706468cedb {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor"} -C3N-01175.scRNA-Seq.S3_L003_R1.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S3_L003_R1_001.fastq.gz 3571524420 FASTQ S3_L003_R1 unaligned CPTAC3 9b3857f9-b778-4de2-aa79-d79229fd1626 fd611575e4b87835e84058e4e4e07b6f {"aliquot_tag": "ALQ_7f99ca17", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01175.scRNA-Seq.S3_L003_R2.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S3_L003_R2_001.fastq.gz 12224467616 FASTQ S3_L003_R2 unaligned CPTAC3 819134a0-dd7b-4c19-926b-60f2ac7c451e 211d28d16857f942c6c3f45cda164cf0 {"aliquot_tag": "ALQ_7f99ca17", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01175.scRNA-Seq.S7_L004_R1.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S7_L004_R1_001.fastq.gz 891052523 FASTQ S7_L004_R1 unaligned CPTAC3 0b69529a-2dbf-4fd2-8f5e-9d02c333d6e9 35fddce9045fcf988cd41c42123e1595 {"aliquot_tag": "ALQ_7f99ca17", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01175.scRNA-Seq.S7_L004_R2.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S7_L004_R2_001.fastq.gz 3037710136 FASTQ S7_L004_R2 unaligned CPTAC3 4e30e442-2f3e-4d5c-9ee4-7c1e0d8bf215 f52f87f3427a42462200827dd0f52365 {"aliquot_tag": "ALQ_7f99ca17", "sample": "S7", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01175.WGS.A C3N-01175 CCRCC WGS tissue_normal CPT0078670009 CPT0078670009.WholeGenome.RP-1303.bam 71890074328 BAM aligned CPTAC3 5c4f4c88-529b-490f-87b3-4ca3808010c3 23d5027d204087f53196d6368382f715 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.WGS.A.hg38 C3N-01175 CCRCC WGS tissue_normal CPT0078670009 24e37fc2-22e8-4c09-bbcd-e39c00715a95_wgs_gdc_realn.bam 104486549337 BAM harmonized CPTAC3 13c9c503-aded-4fc8-ada5-ab0ce27bb69e 085920e1372012858c2e7501e5376a87 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.WGS.N C3N-01175 CCRCC WGS blood_normal CPT0078700002 CPT0078700002.WholeGenome.RP-1303.bam 74511003816 BAM aligned CPTAC3 26b4a4d1-cd8a-45a2-9a1b-f676c1631336 50fd08bddc31e55f2913371555de279f {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal"} -C3N-01175.WGS.N.hg38 C3N-01175 CCRCC WGS blood_normal CPT0078700002 ccfd9642-b949-42e3-8003-971d13a591a4_gdc_realn.bam 111491009195 BAM harmonized CPTAC3 8b1f5901-fbb2-49d1-90cc-1b1d4b6afca7 84bfa5670ab030f3d6d45d6b1394884f {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal"} -C3N-01175.WGS.T C3N-01175 CCRCC WGS tumor CPT0078660009 CPT0078660009.WholeGenome.RP-1303.bam 72923343806 BAM aligned CPTAC3 737111db-6410-46f8-a0a2-a6008a7a2df1 ad31d917fcf31f5c719e8430a1041d07 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor"} -C3N-01175.WGS.T.hg38 C3N-01175 CCRCC WGS tumor CPT0078660009 86d5144f-9ba3-4075-96ba-82a552d4da2d_gdc_realn.bam 109225622331 BAM harmonized CPTAC3 3557da38-3d5a-4963-864f-d678d7850953 98e714172f7b5327b9895ba7cefada06 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor"} -C3N-01175.WXS.A C3N-01175 CCRCC WXS tissue_normal CPT0078670009 CPT0078670009.WholeExome.RP-1303.bam 26545174897 BAM aligned CPTAC3 15cfcc9f-18a6-4c3b-bc6c-7e71bba44f58 92d0a94b4972f652b5be92c91d08bce7 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.WXS.A.hg38 C3N-01175 CCRCC WXS tissue_normal CPT0078670009 24e37fc2-22e8-4c09-bbcd-e39c00715a95_wxs_gdc_realn.bam 35779173936 BAM harmonized CPTAC3 e2e341d4-9fc6-4b74-8508-a213c7d8b9c5 e77ed671a234cbf8d229057a1cdb7943 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01175.WXS.N C3N-01175 CCRCC WXS blood_normal CPT0078700002 CPT0078700002.WholeExome.RP-1303.bam 26387441376 BAM aligned CPTAC3 0e279d75-1c9d-4951-8f2d-e723c98470e6 1f995ca5ff72ba505f1498a68422d794 {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal"} -C3N-01175.WXS.N.hg38 C3N-01175 CCRCC WXS blood_normal CPT0078700002 ccfd9642-b949-42e3-8003-971d13a591a4_gdc_realn.bam 35217640666 BAM harmonized CPTAC3 29b508e5-d42f-4a5f-b2be-fc1f96f53117 6d70d33bad5df5703127153c51b22b5d {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal"} -C3N-01175.WXS.T C3N-01175 CCRCC WXS tumor CPT0078660009 CPT0078660009.WholeExome.RP-1303.bam 31968063190 BAM aligned CPTAC3 e05485f5-8adb-4c6f-9e77-14ffca6ef5d3 c10164730ea375a11f8a1f0445a07e43 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor"} -C3N-01175.WXS.T.hg38 C3N-01175 CCRCC WXS tumor CPT0078660009 86d5144f-9ba3-4075-96ba-82a552d4da2d_gdc_realn.bam 43778984607 BAM harmonized CPTAC3 0d6da033-cde1-47f4-a033-707e93196955 53a9bb015191b9ef62af649b12e2d492 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor"} -C3N-01176.MethArray.Green.A C3N-01176 CCRCC Methylation_Array tissue_normal CPT0078940009 204930640061_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 391cd8ec-13f2-4b54-b57d-ca4ba473b9f9 c7f839538278f3b0ec5174abc4ca4f42 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.MethArray.Green.T C3N-01176 CCRCC Methylation_Array tumor CPT0078930009 202176290147_R03C01_Grn.idat 13676215 IDAT Green NA CPTAC3 adf0d4c0-2870-4576-999e-e17ff9f99793 0ab6e3170079ee1f5308bcac5a88878e {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor"} -C3N-01176.MethArray.Red.A C3N-01176 CCRCC Methylation_Array tissue_normal CPT0078940009 204930640061_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 a48c1d19-5f09-4073-83cc-bc0eef11fd69 7830ca9d804d1d43ef5587a88bc05ca8 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.MethArray.Red.T C3N-01176 CCRCC Methylation_Array tumor CPT0078930009 202176290147_R03C01_Red.idat 13676215 IDAT Red NA CPTAC3 1bb04c46-e7fc-44fe-aed5-9c310f644ffd a821d29b05fba228443f69fd18b7eae7 {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor"} -C3N-01176.miRNA-Seq.A.hg38 C3N-01176 CCRCC miRNA-Seq tissue_normal CPT0078940006 6986f4cc-298e-4d53-8c38-159ed0ed7d45_mirnaseq_gdc_realn.bam 227778295 BAM harmonized CPTAC3 da4d0344-2e87-42b0-9971-56538b9b5dd4 fe1324ab04b18065692bdef1efb18ec4 {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.miRNA-Seq.S20_L008_R1.T C3N-01176 CCRCC miRNA-Seq tumor CPT0078930006 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L008_R1_001.unaln.bam 232389291 BAM S20_L008_R1 unaligned CPTAC3 23f5e03b-ad7d-4037-8a8d-3c0db544b8a1 4f18acf4233ae26bd1a67307abf432cf {"aliquot_tag": "ALQ_a821969e", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01176.miRNA-Seq.S24_L003_R1.A C3N-01176 CCRCC miRNA-Seq tissue_normal CPT0078940006 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L003_R1_001.unaln.bam 204558071 BAM S24_L003_R1 unaligned CPTAC3 abcb9e65-6bdb-46e4-9880-d557fadbb3fb c3bec8cf56510dccd287d2aef2ba9ac7 {"aliquot_tag": "ALQ_1a014a8e", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.miRNA-Seq.T.hg38 C3N-01176 CCRCC miRNA-Seq tumor CPT0078930006 af2bfb03-b4a0-47f3-930a-a780c3dee2f1_mirnaseq_gdc_realn.bam 255549158 BAM harmonized CPTAC3 83ffd0df-f7ef-408b-806f-e93a9fad3f07 37993d13d5029a197653372458c0429f {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor"} -C3N-01176.RNA-Seq.chimeric.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.chimeric.gdc_realn.bam 60935475 BAM chimeric harmonized CPTAC3 4072df40-ecbd-4801-b4a6-3b0a999ed703 a58133c8e6e54d354a9048a37b193e78 {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.RNA-Seq.chimeric.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.chimeric.gdc_realn.bam 139817666 BAM chimeric harmonized CPTAC3 11339342-e532-459a-b6fe-2d77067c233d ca97289c8db250fd7622c1240830030b {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor"} -C3N-01176.RNA-Seq.genomic.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.genomic.gdc_realn.bam 8387793666 BAM genomic harmonized CPTAC3 b4d9b7f6-8377-4b32-b2b6-73542c004ddd 68ce8aa19839b381d88f42e6b8688e73 {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.RNA-Seq.genomic.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.genomic.gdc_realn.bam 7510984237 BAM genomic harmonized CPTAC3 23152348-8249-4bde-b3f6-71f0081dd975 b1c74e5a81ce29ea95b1bf2a48b44341 {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor"} -C3N-01176.RNA-Seq.S3_L001_R1.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R1_001.fastq.gz 4154638260 FASTQ S3_L001_R1 unaligned CPTAC3 02980652-6d5a-42ff-82f5-509e4517f1d2 fabf064dbad72807f53337bdc696b53b {"aliquot_tag": "ALQ_1a014a8e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.RNA-Seq.S3_L001_R2.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R2_001.fastq.gz 4466704957 FASTQ S3_L001_R2 unaligned CPTAC3 51f1907b-0235-495d-bc06-028c37671ac0 9b92b93c4b975fd831e7af3517078f76 {"aliquot_tag": "ALQ_1a014a8e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.RNA-Seq.S9_L003_R1.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R1_001.fastq.gz 3603313334 FASTQ S9_L003_R1 unaligned CPTAC3 104dca41-ddbb-4219-9649-3fda018a597d 6847ae392fcc546909204111700f10ca {"aliquot_tag": "ALQ_a821969e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01176.RNA-Seq.S9_L003_R2.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R2_001.fastq.gz 3916951902 FASTQ S9_L003_R2 unaligned CPTAC3 5292c1d5-4f8f-42da-92b2-96a4d5699b0e 940264b67d7213271dc542276e35586b {"aliquot_tag": "ALQ_a821969e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01176.RNA-Seq.transcriptome.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.transcriptome.gdc_realn.bam 10410054640 BAM transcriptome harmonized CPTAC3 4f55ec74-5266-494a-aa83-08cf9f2411a9 0bc76b68363d6a4e29985adceac144cd {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.RNA-Seq.transcriptome.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.transcriptome.gdc_realn.bam 11179306943 BAM transcriptome harmonized CPTAC3 56d95c06-db16-4c57-a13b-424c97a1a594 841fc3c65da15ccbc3cefe250c12f9d0 {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor"} -C3N-01176.WGS.A C3N-01176 CCRCC WGS tissue_normal CPT0078940009 CPT0078940009.WholeGenome.RP-1303.bam 59940367579 BAM aligned CPTAC3 87bc3fd5-d8b2-4dc7-b135-baa0e677b100 875a892798d63ebab04f51af8eedbc40 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.WGS.A.hg38 C3N-01176 CCRCC WGS tissue_normal CPT0078940009 743d5a09-5ac6-4a46-bcf1-2cc1bfaf36a4_wgs_gdc_realn.bam 88733765754 BAM harmonized CPTAC3 00fb0f17-7f91-4b1b-a7c7-96242b9f8715 f733233e3e7c82c43fd90df72262dd00 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.WGS.N C3N-01176 CCRCC WGS blood_normal CPT0078970002 CPT0078970002.WholeGenome.RP-1303.bam 66649786743 BAM aligned CPTAC3 b3bfe4ec-4dae-4ebd-a7a1-5ee452f8c066 64f2d2400f355abb39505b6346ab5eac {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal"} -C3N-01176.WGS.N.hg38 C3N-01176 CCRCC WGS blood_normal CPT0078970002 fd8d5071-5ea4-4550-ac60-5f35979ccfa1_gdc_realn.bam 101042533880 BAM harmonized CPTAC3 a1b4effd-88af-4de7-8de1-6e607c780a34 9296e63d0ce0bee25181a6da92f17c8f {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal"} -C3N-01176.WGS.T C3N-01176 CCRCC WGS tumor CPT0078930009 CPT0078930009.WholeGenome.RP-1303.bam 83482267289 BAM aligned CPTAC3 52280ddd-81fa-46fc-8637-2e54114d5961 50682b273130fb5b43eb4afb48771513 {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor"} -C3N-01176.WGS.T.hg38 C3N-01176 CCRCC WGS tumor CPT0078930009 102b99bd-cd31-438d-8460-581c9b59a03e_gdc_realn.bam 126699970212 BAM harmonized CPTAC3 ff90b069-7571-41ac-b434-83e8fceede1a 0000f14e44e7127a59fbd6d8b86d0e4b {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor"} -C3N-01176.WXS.A C3N-01176 CCRCC WXS tissue_normal CPT0078940009 CPT0078940009.WholeExome.RP-1303.bam 28485461910 BAM aligned CPTAC3 ddbdd9e8-3224-45bf-ba9b-18ee5a34a0da 0bad4e6ecbf5f9b9b0e8a2ba2375a252 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.WXS.A.hg38 C3N-01176 CCRCC WXS tissue_normal CPT0078940009 743d5a09-5ac6-4a46-bcf1-2cc1bfaf36a4_wxs_gdc_realn.bam 38732160162 BAM harmonized CPTAC3 2cbefed3-9119-4265-9c9c-9973adcd2b38 ccc28a487323f65bdb92c29f601c7215 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01176.WXS.N C3N-01176 CCRCC WXS blood_normal CPT0078970002 CPT0078970002.WholeExome.RP-1303.bam 32067914829 BAM aligned CPTAC3 b9c709b9-19c5-4232-bb9d-8b1a1c91579a c8448b7ef00ad6ccd361f8dc7540ba5a {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal"} -C3N-01176.WXS.N.hg38 C3N-01176 CCRCC WXS blood_normal CPT0078970002 fd8d5071-5ea4-4550-ac60-5f35979ccfa1_gdc_realn.bam 43420067204 BAM harmonized CPTAC3 a9166e91-0547-4238-8f4d-9a5da3b0fa0f 019f8b55b14fe0572b1a6cea5efbedae {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal"} -C3N-01176.WXS.T C3N-01176 CCRCC WXS tumor CPT0078930009 CPT0078930009.WholeExome.RP-1303.bam 30771037107 BAM aligned CPTAC3 df40d1a2-9a0f-4aa1-a70f-709b7d2bf0e1 a5c75e827c71d354785734254a7da952 {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor"} -C3N-01176.WXS.T.hg38 C3N-01176 CCRCC WXS tumor CPT0078930009 102b99bd-cd31-438d-8460-581c9b59a03e_gdc_realn.bam 42516741516 BAM harmonized CPTAC3 53cf889f-d76e-4231-b6d1-d14c522dba6a 3489af52c6870817d9ceaa0c8748f53e {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor"} -C3N-01177.MethArray.Green.T C3N-01177 CCRCC Methylation_Array tumor CPT0379850009 205589740003_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8da1de72-3393-48cd-81c5-1eacdd875dbe c02a9389fd26b7873d6692e1507907ff {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor"} -C3N-01177.MethArray.Red.T C3N-01177 CCRCC Methylation_Array tumor CPT0379850009 205589740003_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 276c29df-f6e4-4989-bf7c-8c7d0c9a8767 e574843d72870240ceccee4d9ffc3bda {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor"} -C3N-01177.miRNA-Seq.S48_L003_R1.T C3N-01177 CCRCC miRNA-Seq tumor CPT0379850006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TTAGGC_S48_L003_R1_001.unaln.bam 251928311 BAM S48_L003_R1 unaligned CPTAC3 bccc9803-19f9-448b-8dfb-cd9ea52005fb 12d7420d633067b61dcddf567a39c5f6 {"aliquot_tag": "ALQ_73c787ea", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01177.miRNA-Seq.T.hg38 C3N-01177 CCRCC miRNA-Seq tumor CPT0379850006 23f42110-a539-4bc8-8d99-b5ea46cb3860_mirnaseq_gdc_realn.bam 268818486 BAM harmonized CPTAC3 4e2cf486-a179-41aa-b371-61e1e57cb0ef baac244e615e29f3c27f799deab8001d {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor"} -C3N-01177.RNA-Seq.chimeric.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.chimeric.gdc_realn.bam 75564924 BAM chimeric harmonized CPTAC3 780804d9-111f-4608-9d74-8b8acaf47896 7e868cefb0f615103229738517da8b31 {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor"} -C3N-01177.RNA-Seq.genomic.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.genomic.gdc_realn.bam 5857513613 BAM genomic harmonized CPTAC3 968b9e02-8417-40ee-981d-7c449112c4ea c12e13e43d0dec813982ea535cf141a1 {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor"} -C3N-01177.RNA-Seq.S31_L008_R1.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 2547271701 FASTQ S31_L008_R1 unaligned CPTAC3 0ddc43d9-99dd-4576-9881-940ebc92064f b1b8afaada9acc56031640de77ce6e77 {"aliquot_tag": "ALQ_73c787ea", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01177.RNA-Seq.S31_L008_R2.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 2999470180 FASTQ S31_L008_R2 unaligned CPTAC3 4160103f-b91c-46e3-a8fc-427a3c98e757 c3c015f029aed35fbd8aeb9bf6c19f2c {"aliquot_tag": "ALQ_73c787ea", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01177.RNA-Seq.transcriptome.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.transcriptome.gdc_realn.bam 7351464077 BAM transcriptome harmonized CPTAC3 59ebecac-85d2-4f87-8418-8c30c0cb47f8 94f758f8e33f2382ee601dc85109534d {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor"} -C3N-01177.WGS.N C3N-01177 CCRCC WGS blood_normal CPT0379960002 CPT0379960002.WholeGenome.RP-2158.bam 22754962129 BAM aligned CPTAC3 96d24a1b-1305-49db-8945-5198289b5a54 37f3a654d75eddc4013e89fee1054784 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01177.WGS.N.hg38 C3N-01177 CCRCC WGS blood_normal CPT0379960002 44936cfc-62ca-45f5-9cb8-d585102b97d9_wgs_gdc_realn.bam 67906285932 BAM harmonized CPTAC3 89cf8de8-a316-49c7-b553-d3110c2ed2a8 3a798afee54c1ed0b94a1222c5fbf685 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01177.WGS.T C3N-01177 CCRCC WGS tumor CPT0379850009 CPT0379850009.WholeGenome.RP-2158.bam 20109164895 BAM aligned CPTAC3 b7fee13d-3ee2-4e19-ab9c-3e1049641400 b9864f30c2263bb326fdd2a2bd498d89 {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor"} -C3N-01177.WGS.T.hg38 C3N-01177 CCRCC WGS tumor CPT0379850009 ea1fd606-337d-43ec-bfff-5c12813fdb44_wgs_gdc_realn.bam 60346497248 BAM harmonized CPTAC3 0e1459a8-bd99-440a-9d8d-14917e243cca 939f4aa6b748e759565cf5a7b0af69f7 {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor"} -C3N-01177.WXS.N C3N-01177 CCRCC WXS blood_normal CPT0379960002 CPT0379960002.WholeExome.RP-1303.bam 29890388195 BAM aligned CPTAC3 588f1c74-0b2f-4a3e-a567-7cd0944966c4 1ae86db6ac43d03bf6b03f616743ac57 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01177.WXS.N.hg38 C3N-01177 CCRCC WXS blood_normal CPT0379960002 44936cfc-62ca-45f5-9cb8-d585102b97d9_wxs_gdc_realn.bam 40928413234 BAM harmonized CPTAC3 f1129b0f-043a-4af0-90fe-5feafcd150cd 2e54f673fae0cce4ccd5984b5ff12594 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal"} -C3N-01177.WXS.T C3N-01177 CCRCC WXS tumor CPT0379850009 CPT0379850009.WholeExome.RP-1303.bam 26731760799 BAM aligned CPTAC3 1a988bd1-4fa3-49ca-9991-7ca2798b944a 623e75492b487c253926c2d4df79386e {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor"} -C3N-01177.WXS.T.hg38 C3N-01177 CCRCC WXS tumor CPT0379850009 ea1fd606-337d-43ec-bfff-5c12813fdb44_wxs_gdc_realn.bam 36646966427 BAM harmonized CPTAC3 bd1192c3-c60f-413c-b260-dcc1bf31f45e 4e8157e627b22d0df0a07629c4198c4a {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor"} -C3N-01178.MethArray.Green.A C3N-01178 CCRCC Methylation_Array tissue_normal CPT0079000009 204930630084_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f29d0820-fcbf-4b7c-a1a1-73511fb938ad f72b1b7884dcae0990a32db4bcae6afe {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.MethArray.Green.T C3N-01178 CCRCC Methylation_Array tumor CPT0078990009 202184990069_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc1ac39d-fc6b-4bdc-a5c1-ea5366be22a7 6c296d20113be5a76243aa8db2a43b74 {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor"} -C3N-01178.MethArray.Red.A C3N-01178 CCRCC Methylation_Array tissue_normal CPT0079000009 204930630084_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 e3cd86c4-680d-49ca-8ec4-1e3a41811f71 fd46f5b6a11b49a441fbd61dabdc7fbc {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.MethArray.Red.T C3N-01178 CCRCC Methylation_Array tumor CPT0078990009 202184990069_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 dad4607b-f53f-456b-9419-9bc9f5dbebec 4e336a4650189b473ccb82192a797dff {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor"} -C3N-01178.miRNA-Seq.A.hg38 C3N-01178 CCRCC miRNA-Seq tissue_normal CPT0079000006 21185157-b396-46ad-a069-5962cd59fef3_mirnaseq_gdc_realn.bam 232546626 BAM harmonized CPTAC3 9e5b1eff-0d97-4410-8b6a-fd12dce3063c 1e4f20b4d064c42be6f30405b2dcf078 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.miRNA-Seq.S21_L008_R1.T C3N-01178 CCRCC miRNA-Seq tumor CPT0078990006 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L008_R1_001.unaln.bam 218998917 BAM S21_L008_R1 unaligned CPTAC3 c0ebc26b-e1de-46d9-b590-e46c84442de2 212292582ddc103712f52d240f440f6f {"aliquot_tag": "ALQ_e2918e3f", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01178.miRNA-Seq.S25_L002_R1.A C3N-01178 CCRCC miRNA-Seq tissue_normal CPT0079000006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTGAT_S25_L002_R1_001.unaln.bam 207585858 BAM S25_L002_R1 unaligned CPTAC3 f25b1154-3e41-49fc-b2d0-0450502b2111 d76844a64ed4422947ed34c26e4aa008 {"aliquot_tag": "ALQ_6ef9b632", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.miRNA-Seq.T.hg38 C3N-01178 CCRCC miRNA-Seq tumor CPT0078990006 9ea506a7-defa-444e-9acf-61e2ba060deb_mirnaseq_gdc_realn.bam 240575977 BAM harmonized CPTAC3 2032b393-62c1-4edb-b26c-f7d2fa881f1a 91e3f25db36fd75bb22ed37969a0c565 {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor"} -C3N-01178.RNA-Seq.chimeric.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.chimeric.gdc_realn.bam 34870212 BAM chimeric harmonized CPTAC3 f733d565-9c65-437d-bbac-c757432a571c bb80da870adeeb8ff3c57f68f6628b62 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.RNA-Seq.chimeric.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.chimeric.gdc_realn.bam 135880560 BAM chimeric harmonized CPTAC3 09c157a8-bc13-4235-b041-bf108b251bce 25ada8b8575516f68cb34c66edd2b592 {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor"} -C3N-01178.RNA-Seq.genomic.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.genomic.gdc_realn.bam 7893138898 BAM genomic harmonized CPTAC3 6daab5fc-082c-4426-b89b-decd58a0e265 ad05085c29126c4b272511e4d097d644 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.RNA-Seq.genomic.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.genomic.gdc_realn.bam 7510618070 BAM genomic harmonized CPTAC3 2dc1ed5e-1cb3-4774-a6a4-387c89853582 06c8e77842cf28c37ff7534b68c6607f {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor"} -C3N-01178.RNA-Seq.S11_L003_R1.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3553629147 FASTQ S11_L003_R1 unaligned CPTAC3 19f6c4c3-c727-4e0c-b117-36485f2e8ad3 b5432c951f3a71b76891148c9212a328 {"aliquot_tag": "ALQ_e2918e3f", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01178.RNA-Seq.S11_L003_R2.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R2_001.fastq.gz 3895588213 FASTQ S11_L003_R2 unaligned CPTAC3 19d1dba9-e1aa-4b52-ae10-f5971ea2474a 7d9d4e80e2fb5ffd552e9537355e756b {"aliquot_tag": "ALQ_e2918e3f", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01178.RNA-Seq.S2_L001_R1.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R1_001.fastq.gz 4120851057 FASTQ S2_L001_R1 unaligned CPTAC3 01cd24dc-7356-4f0d-baca-aa8aea70f070 fae4a5eef4d019c1648e8b9e9d98a73d {"aliquot_tag": "ALQ_6ef9b632", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.RNA-Seq.S2_L001_R2.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R2_001.fastq.gz 3789044481 FASTQ S2_L001_R2 unaligned CPTAC3 aa50587f-fd93-45c5-9dbf-0c84e6fa1105 e8cc41ee47f256fafe3df55bce75eb5c {"aliquot_tag": "ALQ_6ef9b632", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.RNA-Seq.transcriptome.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.transcriptome.gdc_realn.bam 8818970873 BAM transcriptome harmonized CPTAC3 2d2d2607-06da-47e5-a70c-ddcf4f9ba1ba 8a049949c181761970f4c22e0838ee95 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.RNA-Seq.transcriptome.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.transcriptome.gdc_realn.bam 10930322424 BAM transcriptome harmonized CPTAC3 bed998c8-4ddc-4b40-a93e-1907d153482f 93239a3f5ea952b2f67439bd26bb7c16 {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor"} -C3N-01178.WGS.A C3N-01178 CCRCC WGS tissue_normal CPT0079000009 CPT0079000009.WholeGenome.RP-1303.bam 60180975440 BAM aligned CPTAC3 134c6ce4-4875-4355-8279-0fe54a7d83d1 8d4ef9fbda85ec971d94c173e898b54a {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.WGS.A.hg38 C3N-01178 CCRCC WGS tissue_normal CPT0079000009 3d1cd639-4972-46e5-8c25-a02657b158bf_wgs_gdc_realn.bam 87863898901 BAM harmonized CPTAC3 bb34758d-23b1-4d4e-9a7b-79cf3c4e3fcc 244408cf88bb3025e9f41ce9601ef785 {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.WGS.N C3N-01178 CCRCC WGS blood_normal CPT0079040002 CPT0079040002.WholeGenome.RP-1303.bam 65713423961 BAM aligned CPTAC3 563c4f69-a5dd-4524-8307-248016753b90 7754a9fc2fe4c1f7837bc1c02a8307b9 {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01178.WGS.N.hg38 C3N-01178 CCRCC WGS blood_normal CPT0079040002 803a5732-d362-4613-8b64-0e63e6b4a6b6_gdc_realn.bam 97661540851 BAM harmonized CPTAC3 2d71b33c-4581-447a-ad49-bbc6bf5a7910 e81e13d76fc3da18e0aaf3ecfea5a7fa {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01178.WGS.T C3N-01178 CCRCC WGS tumor CPT0078990009 CPT0078990009.WholeGenome.RP-1303.bam 71293867476 BAM aligned CPTAC3 c13545f3-90e6-4304-875c-9124fa84973f 26ef103e1375e22b7b1345b860a2ec98 {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor"} -C3N-01178.WGS.T.hg38 C3N-01178 CCRCC WGS tumor CPT0078990009 498203e3-99ec-4ebd-8c3e-f2402caa4788_gdc_realn.bam 106635932287 BAM harmonized CPTAC3 6d0a5018-11f1-4a56-b839-873a254e75a8 ddc431cab85252b32d4d0337c6b2fcca {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor"} -C3N-01178.WXS.A C3N-01178 CCRCC WXS tissue_normal CPT0079000009 CPT0079000009.WholeExome.RP-1303.bam 37714195417 BAM aligned CPTAC3 5102ba7e-f6d1-4cd4-841f-36e59c0cd7fc 1b21e280788ed859c2de16ddd41be87a {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.WXS.A.hg38 C3N-01178 CCRCC WXS tissue_normal CPT0079000009 3d1cd639-4972-46e5-8c25-a02657b158bf_wxs_gdc_realn.bam 50241716289 BAM harmonized CPTAC3 941556af-baff-419f-9855-9770e31b7bf6 c3e644569fb988584bc156a28c3cd31d {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01178.WXS.N C3N-01178 CCRCC WXS blood_normal CPT0079040002 CPT0079040002.WholeExome.RP-1303.bam 27711822688 BAM aligned CPTAC3 bc4ffd72-4f56-4f82-ac12-07a3e5d0654e 048accca0fa9588b2dac81a07ef77f69 {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01178.WXS.N.hg38 C3N-01178 CCRCC WXS blood_normal CPT0079040002 803a5732-d362-4613-8b64-0e63e6b4a6b6_gdc_realn.bam 37235148789 BAM harmonized CPTAC3 709f9cc6-2f7b-457a-b982-1f495fd06f61 7c44653a879d4f8c2288e4a9cb3fc0d2 {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01178.WXS.T C3N-01178 CCRCC WXS tumor CPT0078990009 CPT0078990009.WholeExome.RP-1303.bam 33825100042 BAM aligned CPTAC3 a5459918-8a0f-443c-ab7f-84ca5ed59d17 7d831377a510ee546acdfecb544ba4ce {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor"} -C3N-01178.WXS.T.hg38 C3N-01178 CCRCC WXS tumor CPT0078990009 498203e3-99ec-4ebd-8c3e-f2402caa4788_gdc_realn.bam 47109885213 BAM harmonized CPTAC3 462ef77b-35c1-42df-be69-283f75cd43b3 3fc6330853b2cce328541cef1b8d63cb {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor"} -C3N-01179.MethArray.Green.A C3N-01179 CCRCC Methylation_Array tissue_normal CPT0088920009 204930640108_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 83c5d436-63ff-467f-9f97-860992984c2b 3d710e4c9a3cd8321ad59018c0555310 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.MethArray.Green.T C3N-01179 CCRCC Methylation_Array tumor CPT0088900009 202178770143_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 bda52d99-c83d-4956-b535-bd78edf1c1b5 09beeafccb528f935d5a344f5337d093 {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor"} -C3N-01179.MethArray.Red.A C3N-01179 CCRCC Methylation_Array tissue_normal CPT0088920009 204930640108_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 1f28b8d9-97da-4c0e-9629-044c829a922f 038564a0acd4c94584260ba89455b903 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.MethArray.Red.T C3N-01179 CCRCC Methylation_Array tumor CPT0088900009 202178770143_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 b2df9d2f-b128-438a-884c-233961c03d47 1634bcbd99fd3567181af92b32e8b24a {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor"} -C3N-01179.miRNA-Seq.A.hg38 C3N-01179 CCRCC miRNA-Seq tissue_normal CPT0088920006 b38b9d1c-e02f-47b5-b722-d31ce7980de8_mirnaseq_gdc_realn.bam 193275925 BAM harmonized CPTAC3 f25ea0be-fe4d-4d91-a062-383c4a7b3b09 83c3acde1c64fe50fd3d7eafd7708b2f {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.miRNA-Seq.S17_L006_R1.T C3N-01179 CCRCC miRNA-Seq tumor CPT0088900006 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L006_R1_001.unaln.bam 292017341 BAM S17_L006_R1 unaligned CPTAC3 273224b2-4fbd-4505-a36b-16f4f1946cb5 4e8d437740ef2e225dbddba3a082dad9 {"aliquot_tag": "ALQ_36a1fee2", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01179.miRNA-Seq.S33_L002_R1.A C3N-01179 CCRCC miRNA-Seq tissue_normal CPT0088920006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGGCG_S33_L002_R1_001.unaln.bam 171033840 BAM S33_L002_R1 unaligned CPTAC3 2c114079-d07c-45fc-b9d0-e07d63f133c9 143fee4fced5e962d8f852b5bd07fd48 {"aliquot_tag": "ALQ_4c61ad82", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.miRNA-Seq.T.hg38 C3N-01179 CCRCC miRNA-Seq tumor CPT0088900006 a4c78f92-1c2d-47d1-9492-3d522c178441_mirnaseq_gdc_realn.bam 328502183 BAM harmonized CPTAC3 4e2f2a32-5ea7-4cde-b1e1-6f853bdcab78 d05700706c5b16003ff1e81fbaa2095e {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor"} -C3N-01179.RNA-Seq.chimeric.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.chimeric.gdc_realn.bam 27022296 BAM chimeric harmonized CPTAC3 ce37da19-cffc-4cb3-bdb6-c05ffcb63bb9 e9656d50f948b11216dcccc509da667c {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.RNA-Seq.chimeric.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.chimeric.gdc_realn.bam 51505894 BAM chimeric harmonized CPTAC3 cd321c81-6cae-4c40-8911-fe4873dc6f84 c2b8f46b6e1b54d2156c1a35b162766a {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor"} -C3N-01179.RNA-Seq.genomic.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.genomic.gdc_realn.bam 5166094162 BAM genomic harmonized CPTAC3 2057cf8a-36f6-48f1-940a-c01900487834 2a4f2e982a63c6b860b8f8f850f04d01 {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.RNA-Seq.genomic.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.genomic.gdc_realn.bam 8917317934 BAM genomic harmonized CPTAC3 beb88f5c-50d2-4aae-b42c-4f500bb8602b 03f6a06069d969e074a2c96d48045194 {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor"} -C3N-01179.RNA-Seq.S14_L004_R1.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R1_001.fastq.gz 4322063086 FASTQ S14_L004_R1 unaligned CPTAC3 f823c35f-49f6-4b4e-924f-1301c97cf2e0 d7a48096e9a33177db684adcd40b8750 {"aliquot_tag": "ALQ_36a1fee2", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01179.RNA-Seq.S14_L004_R2.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R2_001.fastq.gz 4664159822 FASTQ S14_L004_R2 unaligned CPTAC3 4ac98ccb-09db-4275-b6d1-040d73f9f344 e9c63fbbf8a46e76969dc6e428014a04 {"aliquot_tag": "ALQ_36a1fee2", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01179.RNA-Seq.S2_L007_R1.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R1_001.fastq.gz 2465773322 FASTQ S2_L007_R1 unaligned CPTAC3 308882f2-bdc0-49ee-85b1-8522f3e4c35e c5f2418369b2f143836ac0c70204c46a {"aliquot_tag": "ALQ_4c61ad82", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.RNA-Seq.S2_L007_R2.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R2_001.fastq.gz 2587644125 FASTQ S2_L007_R2 unaligned CPTAC3 a7695af2-66a2-40dd-adb9-91a33772e7ae 78ec8e717cb44e92b25182c1ee73f086 {"aliquot_tag": "ALQ_4c61ad82", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.RNA-Seq.transcriptome.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.transcriptome.gdc_realn.bam 5933277621 BAM transcriptome harmonized CPTAC3 7d8b0bc3-d272-4814-bb78-d116fe262154 4d65cb8e87d956aa0ee8234c545bd765 {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.RNA-Seq.transcriptome.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.transcriptome.gdc_realn.bam 11244198338 BAM transcriptome harmonized CPTAC3 8247bc15-7a15-425f-b1fa-974b2c185539 2a4f4a7894147176ca7560ec0f571de6 {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor"} -C3N-01179.WGS.A C3N-01179 CCRCC WGS tissue_normal CPT0088920009 CPT0088920009.WholeGenome.RP-1303.bam 54025334955 BAM aligned CPTAC3 8c2ebd62-e915-49de-b72f-9ffe2022a344 19be4fb4fed88a1a5b251652d589aa30 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.WGS.A.hg38 C3N-01179 CCRCC WGS tissue_normal CPT0088920009 b4791282-5fc0-461f-bbf6-bcc761c8c7f6_wgs_gdc_realn.bam 79509618756 BAM harmonized CPTAC3 513bfba6-da3a-4e5e-bb30-871b7e763e25 ac98144838be5e7c1c31ab7e8cfc94ad {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.WGS.N C3N-01179 CCRCC WGS blood_normal CPT0088960002 CPT0088960002.WholeGenome.RP-1303.bam 64282834856 BAM aligned CPTAC3 fd7aa4cf-5001-4baf-882a-9ba248d047eb 0e00f2862cec8d11a2f81c655033355f {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01179.WGS.N.hg38 C3N-01179 CCRCC WGS blood_normal CPT0088960002 f6445a84-3231-48a8-b433-c6945551e2a9_gdc_realn.bam 96748031516 BAM harmonized CPTAC3 b2e1c88c-6ecd-4d24-8612-4e788daf9c9d 50f1da04e44cff7a86004b3ae35d7a23 {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01179.WGS.T C3N-01179 CCRCC WGS tumor CPT0088900009 CPT0088900009.WholeGenome.RP-1303.bam 66092434631 BAM aligned CPTAC3 0a0c12cf-3827-406e-9e36-ae2ef38fd13e 479719231e15a926f60488a509d157ea {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor"} -C3N-01179.WGS.T.hg38 C3N-01179 CCRCC WGS tumor CPT0088900009 33eb4b5e-1c4e-4d98-b6c0-5753fe05740e_gdc_realn.bam 97566593847 BAM harmonized CPTAC3 14534e70-f589-4bf0-9fb7-25f0c7725131 28c96aaec66383e6e673861aa64fc353 {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor"} -C3N-01179.WXS.A C3N-01179 CCRCC WXS tissue_normal CPT0088920009 CPT0088920009.WholeExome.RP-1303.bam 25424375645 BAM aligned CPTAC3 abdd9a29-d2ed-4db1-9620-be557f54a99f 9c318eedc42f3bbcb12360a0e5de3e2c {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.WXS.A.hg38 C3N-01179 CCRCC WXS tissue_normal CPT0088920009 b4791282-5fc0-461f-bbf6-bcc761c8c7f6_wxs_gdc_realn.bam 34014417193 BAM harmonized CPTAC3 64119e28-53ce-4963-b0a1-e52383dfdfd3 3b6c0abdd0901e92a8c6a9851bec45a5 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01179.WXS.N C3N-01179 CCRCC WXS blood_normal CPT0088960002 CPT0088960002.WholeExome.RP-1303.bam 34431920908 BAM aligned CPTAC3 c590f011-33ca-4e3b-88fd-a4a68af7f64f e50a24ee2f7202debcf0087cae3a95b6 {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01179.WXS.N.hg38 C3N-01179 CCRCC WXS blood_normal CPT0088960002 f6445a84-3231-48a8-b433-c6945551e2a9_gdc_realn.bam 47182602500 BAM harmonized CPTAC3 9c91ae41-0a16-4cdf-8d33-dd72c519b7d1 d92a892c5de1aa4b52e640e1746cf3b1 {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01179.WXS.T C3N-01179 CCRCC WXS tumor CPT0088900009 CPT0088900009.WholeExome.RP-1303.bam 28646563541 BAM aligned CPTAC3 44f060cd-cf8f-4aa2-8972-185775e8634e 29aafd6a39ef2566f5df69afcb520429 {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor"} -C3N-01179.WXS.T.hg38 C3N-01179 CCRCC WXS tumor CPT0088900009 33eb4b5e-1c4e-4d98-b6c0-5753fe05740e_gdc_realn.bam 38866696650 BAM harmonized CPTAC3 7cb3a8e9-1d01-460d-9d52-c3a41c4bce29 92abac37b4d0ac711ea2e03540931def {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor"} -C3N-01180.MethArray.Green.T C3N-01180 CCRCC Methylation_Array tumor CPT0088970009 202178770109_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0297e22a-faba-4273-a6b5-81910187cf0a d367284c2c40025f117d9563914dd3e8 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor"} -C3N-01180.MethArray.Red.T C3N-01180 CCRCC Methylation_Array tumor CPT0088970009 202178770109_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 c0619a04-1c86-48b1-98a9-2a499547370f 0ba0639c44fe326a00b8dd38ca67f600 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor"} -C3N-01180.miRNA-Seq.S18_L006_R1.T C3N-01180 CCRCC miRNA-Seq tumor CPT0088970006 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L006_R1_001.unaln.bam 157141358 BAM S18_L006_R1 unaligned CPTAC3 c2d85351-2ed5-42ca-bf8a-c5e0410dfb67 739bf53f5f36c4904f01a387d3f37777 {"aliquot_tag": "ALQ_848122f2", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01180.miRNA-Seq.T.hg38 C3N-01180 CCRCC miRNA-Seq tumor CPT0088970006 fce09e16-89f4-438b-9d9f-fe04a3cfbf0a_mirnaseq_gdc_realn.bam 176004214 BAM harmonized CPTAC3 38ba633f-f15f-48a1-a6ed-c36bfe997591 00cef29ad32601183d14d2e4500cc538 {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor"} -C3N-01180.RNA-Seq.chimeric.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.chimeric.gdc_realn.bam 40577493 BAM chimeric harmonized CPTAC3 c136ff4e-ff22-4ee6-8067-73c0e22a66b8 270b440caa39f39b79bee81ff4d7907c {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor"} -C3N-01180.RNA-Seq.genomic.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.genomic.gdc_realn.bam 7307407565 BAM genomic harmonized CPTAC3 f86980df-3131-4a52-8166-a824c08b2527 a22c9b51ddba4a427f3ed5be320b0430 {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor"} -C3N-01180.RNA-Seq.S13_L004_R1.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R1_001.fastq.gz 3645122689 FASTQ S13_L004_R1 unaligned CPTAC3 d07af196-f7b8-42ef-b95a-4403e8ede3f3 58968de66ae9232546847ab5f703f202 {"aliquot_tag": "ALQ_848122f2", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01180.RNA-Seq.S13_L004_R2.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R2_001.fastq.gz 3897734313 FASTQ S13_L004_R2 unaligned CPTAC3 59baaed9-9a10-4bfe-9657-5ac24fdbd053 9063a284837d98374e6e2dff30863f37 {"aliquot_tag": "ALQ_848122f2", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01180.RNA-Seq.transcriptome.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.transcriptome.gdc_realn.bam 10661221615 BAM transcriptome harmonized CPTAC3 861830de-bb5d-45f4-8525-6942e0749d3a 6a7ca2192054376fd0fb30ccc93150dd {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor"} -C3N-01180.scRNA-Seq.S4_L003_R1.T C3N-01180 CCRCC scRNA-Seq tumor CPT0088970013 20220127_WUSTL_TWFU-CPT0088970013-Y1N1Z1_1Bn1_1_AAGGGCCGCA+CTGATTCCTC_S4_L003_R1_001.fastq.gz 6080929668 FASTQ S4_L003_R1 unaligned CPTAC3 3670a1d8-e41f-4ed1-b823-2ea7edf35a18 e496cabf15c2b1c31e79dbb80ac8d94a {"aliquot_tag": "ALQ_edf0e73c", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01180.scRNA-Seq.S4_L003_R2.T C3N-01180 CCRCC scRNA-Seq tumor CPT0088970013 20220127_WUSTL_TWFU-CPT0088970013-Y1N1Z1_1Bn1_1_AAGGGCCGCA+CTGATTCCTC_S4_L003_R2_001.fastq.gz 20888751929 FASTQ S4_L003_R2 unaligned CPTAC3 54bcd617-1468-4c39-bf55-9761602d5c43 4ae0bebdb83791746c14d0da74e119e4 {"aliquot_tag": "ALQ_edf0e73c", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01180.WGS.N C3N-01180 CCRCC WGS blood_normal CPT0089010002 CPT0089010002.WholeGenome.RP-1303.bam 65469560970 BAM aligned CPTAC3 f5d9c481-d4c6-4b37-aa82-5d2b9c23d96a 32b3c893635e13da71e3e358f81665ba {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal"} -C3N-01180.WGS.N.hg38 C3N-01180 CCRCC WGS blood_normal CPT0089010002 05e1d252-9d46-47b7-9948-9b5dd30e67e3_gdc_realn.bam 97287608468 BAM harmonized CPTAC3 bcc33626-4667-47c9-a402-8746520a80dd 0aaceb35d90ee316168690cb3c12e7b6 {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal"} -C3N-01180.WGS.T C3N-01180 CCRCC WGS tumor CPT0088970009 CPT0088970009.WholeGenome.RP-1303.bam 66457230201 BAM aligned CPTAC3 a8e8e902-9cf8-4ed2-a74a-627eb36fe03f ce8e05bf68d3c84789823cd792886af7 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor"} -C3N-01180.WGS.T.hg38 C3N-01180 CCRCC WGS tumor CPT0088970009 5aa36474-344c-4507-9cf4-b2d8c03b34c0_gdc_realn.bam 99294390661 BAM harmonized CPTAC3 1dcc1020-894b-4352-826d-0da39a09de2b 1a7f058475b1f8ba79c8349a9b608393 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor"} -C3N-01180.WXS.N C3N-01180 CCRCC WXS blood_normal CPT0089010002 CPT0089010002.WholeExome.RP-1303.bam 33484990965 BAM aligned CPTAC3 abeeb53c-2069-47b1-996c-ca3d02748269 ff157d14f5cd0f9d2d132d1c8b5c6345 {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal"} -C3N-01180.WXS.N.hg38 C3N-01180 CCRCC WXS blood_normal CPT0089010002 05e1d252-9d46-47b7-9948-9b5dd30e67e3_gdc_realn.bam 45574756616 BAM harmonized CPTAC3 cbdc358a-4144-4c44-b7eb-745fc55db239 a2f43bdea8e8a45c2af84cf6130bd0ff {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal"} -C3N-01180.WXS.T C3N-01180 CCRCC WXS tumor CPT0088970009 CPT0088970009.WholeExome.RP-1303.bam 27294197186 BAM aligned CPTAC3 5c18e392-714d-4f5d-8488-d20ace442cf0 4cd46966f633c83e651d3042b67084b4 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor"} -C3N-01180.WXS.T.hg38 C3N-01180 CCRCC WXS tumor CPT0088970009 5aa36474-344c-4507-9cf4-b2d8c03b34c0_gdc_realn.bam 37234625238 BAM harmonized CPTAC3 d6aad1de-5c2e-4ea3-9400-8ed05ad799ff b6f391ef25ef3b52b59ae2d5fe76ac01 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor"} -C3N-01191.miRNA-Seq.A.hg38 C3N-01191 GBM miRNA-Seq tissue_normal CPT0402700010 197c71a9-d007-4a10-b4ee-1f3827d66ce5_mirnaseq_gdc_realn.bam 316551357 BAM harmonized CPTAC3 cd09bf30-6dcd-458b-bef9-d228867b0b9d 7de09daece77e8b506e00adc716cbe71 {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.miRNA-Seq.S31_L005_R1.A C3N-01191 GBM miRNA-Seq tissue_normal CPT0402700010 210702_UNC32-K00270_0289_AHKJ22BBXY_CATGGC_S31_L005_R1_001.unaln.bam 290053129 BAM S31_L005_R1 unaligned CPTAC3 d3dd4a04-44a7-4422-8f6d-7ace7888b09b f9c1805f36fe57ad2fcc3ade02116dc8 {"aliquot_tag": "ALQ_d6aa1e11", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.RNA-Seq.chimeric.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.chimeric.gdc_realn.bam 164817895 BAM chimeric harmonized CPTAC3 44e78f64-a4f1-47c9-84e7-9808033fee9c 66661334d4660f8b3a92cad7cc71b509 {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.RNA-Seq.genomic.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.genomic.gdc_realn.bam 9213919004 BAM genomic harmonized CPTAC3 9a2efa90-6c0f-488f-9866-843156c927d4 b99eb30f75d1bea9c986ae8b94efeabe {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.RNA-Seq.S20_L005_R1.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R1_001.fastq.gz 4292142230 FASTQ S20_L005_R1 unaligned CPTAC3 72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4 cd279c856a08eda5e1d7be53c70c7e1e {"aliquot_tag": "ALQ_d6aa1e11", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.RNA-Seq.S20_L005_R2.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R2_001.fastq.gz 4572187365 FASTQ S20_L005_R2 unaligned CPTAC3 7ee179a1-f928-4601-b0a9-647dad31f4fd f09cf1f6aba78db7f6b0ceb48ba9958e {"aliquot_tag": "ALQ_d6aa1e11", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.RNA-Seq.transcriptome.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.transcriptome.gdc_realn.bam 10970767592 BAM transcriptome harmonized CPTAC3 a8be9106-90c4-4910-97ad-191e7eed5551 54355df7e132faa403742d3bf3ff4d1b {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.WXS.A C3N-01191 GBM WXS tissue_normal CPT0402700007 CPT0402700007.WholeExome.RP-1303.bam 28467491827 BAM aligned CPTAC3 db0aa74f-75b0-4c87-8267-7e7d449e76db 9f1fef72d8b687403dd2a44ed089e14b {"aliquot_tag": "ALQ_51d5baf3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.WXS.A.hg38 C3N-01191 GBM WXS tissue_normal CPT0402700007 a926769c-4f8b-489a-9339-88c74a323423_wxs_gdc_realn.bam 39150535552 BAM harmonized CPTAC3 a40bdbe8-5de1-484e-964f-ff03bf16e848 9471241473659d120b5a597b1c220138 {"aliquot_tag": "ALQ_51d5baf3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01191.WXS.N C3N-01191 GBM WXS blood_normal CPT0402750002 CPT0402750002.WholeExome.RP-1303.bam 35545540392 BAM aligned CPTAC3 42123d2d-53fd-445f-a834-939085063605 50df2bff8cfcd5e146602b6b3d3538b5 {"aliquot_tag": "ALQ_e95fc10c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01191.WXS.N.hg38 C3N-01191 GBM WXS blood_normal CPT0402750002 a0970679-8442-4057-b84f-477450a88256_wxs_gdc_realn.bam 49650135090 BAM harmonized CPTAC3 693176e7-e87c-49ef-9740-6f39f73e2633 3ca2a31532da05cb1eafd21bf240df58 {"aliquot_tag": "ALQ_e95fc10c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01192.MethArray.Green.T C3N-01192 GBM Methylation_Array tumor CPT0087950009 202234380024_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2658143c-074b-405e-9f3e-4abc3cb2e007 58f0f469c81607a77b2446e52c485695 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor"} -C3N-01192.MethArray.Red.T C3N-01192 GBM Methylation_Array tumor CPT0087950009 202234380024_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 2f11936a-8f5a-4124-b086-2c10ac8ab4c5 ccaaa82be14be0f7e40283e5c8650d9a {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor"} -C3N-01192.miRNA-Seq.S44_L008_R1.T C3N-01192 GBM miRNA-Seq tumor CPT0087950006 180724_UNC32-K00270_0106_BHWK3MBBXX_GAGTGG_S44_L008_R1_001.unaln.bam 292910804 BAM S44_L008_R1 unaligned CPTAC3 d58ca110-1c3f-48ff-86a7-d0a5b3dde7d7 16509f98ee05d30b9ce4e631b71d35f5 {"aliquot_tag": "ALQ_809017b", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01192.miRNA-Seq.T.hg38 C3N-01192 GBM miRNA-Seq tumor CPT0087950006 239de7c6-89c3-4b9d-8222-5d0124e73f76_mirnaseq_gdc_realn.bam 316850254 BAM harmonized CPTAC3 f60a6cd3-d6e2-4a87-b6a8-f564a6c77f9a f1ccaad97faec64607b6982ac986d57a {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor"} -C3N-01192.RNA-Seq.chimeric.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.chimeric.gdc_realn.bam 53093648 BAM chimeric harmonized CPTAC3 d0a9c595-2395-42fc-a892-d5c6d8f0ff7f e72c7c25d323d76547a87f3f56dc1727 {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor"} -C3N-01192.RNA-Seq.genomic.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.genomic.gdc_realn.bam 10153664616 BAM genomic harmonized CPTAC3 4ff8f311-10e7-483b-8e86-5adb6b1a02dd 0ac32de7b0064b68e48a339a3537c79c {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor"} -C3N-01192.RNA-Seq.S22_L008_R1.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R1_001.fastq.gz 4559078143 FASTQ S22_L008_R1 unaligned CPTAC3 8586880b-19f8-43da-a85b-7ffc96dcfe6e 918d088606e2947da452986af766d2ae {"aliquot_tag": "ALQ_809017b", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01192.RNA-Seq.S22_L008_R2.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R2_001.fastq.gz 5032932202 FASTQ S22_L008_R2 unaligned CPTAC3 400ea065-5905-41ba-86de-b5986720714d 89b608f4be723544235892fd941c39ba {"aliquot_tag": "ALQ_809017b", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01192.RNA-Seq.transcriptome.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.transcriptome.gdc_realn.bam 12419851304 BAM transcriptome harmonized CPTAC3 ebc65c90-31f6-49c0-ad44-c3655bbb3a8c 7cf3e5c5556d441a3acf6b36cca2bf17 {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor"} -C3N-01192.WGS.N C3N-01192 GBM WGS blood_normal CPT0087980002 CPT0087980002.WholeGenome.RP-1303.bam 69705723979 BAM aligned CPTAC3 8316a058-3015-4a6f-858e-7d3958f255ec 6f41be0674653ebc0c0e14a4005fa669 {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01192.WGS.N.hg38 C3N-01192 GBM WGS blood_normal CPT0087980002 300522b0-ac2f-4ec7-a5ae-cd55519df19c_wgs_gdc_realn.bam 102084073930 BAM harmonized CPTAC3 ff0b98e8-93b8-4492-91ee-259293a5571a ee2d3dc529e427e8709e0b8efcd0895c {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01192.WGS.T C3N-01192 GBM WGS tumor CPT0087950009 CPT0087950009.WholeGenome.RP-1303.bam 66980928033 BAM aligned CPTAC3 9b796c09-8256-4eae-9ddd-be685b35924d 71398d501fa658b4bea4d46d12921748 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor"} -C3N-01192.WGS.T.hg38 C3N-01192 GBM WGS tumor CPT0087950009 b4dc9536-147b-46cf-b704-dc9244cb3980_wgs_gdc_realn.bam 99753558206 BAM harmonized CPTAC3 71abf089-0d4a-4f62-9691-f10844c265d1 956e2d75f24d45815e4121cf6c014b41 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor"} -C3N-01192.WXS.N C3N-01192 GBM WXS blood_normal CPT0087980002 CPT0087980002.WholeExome.RP-1303.bam 55467664484 BAM aligned CPTAC3 2c99b783-d1ee-40c2-81b4-f6083f05943b ff53694d29ff5d8f8d7820bcd8e0cfb1 {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01192.WXS.N.hg38 C3N-01192 GBM WXS blood_normal CPT0087980002 300522b0-ac2f-4ec7-a5ae-cd55519df19c_wxs_gdc_realn.bam 74498408960 BAM harmonized CPTAC3 69f9c1f6-3720-4de1-a3fa-23560dd44808 27ae4c2e7cc80b725cb7102c78855e43 {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01192.WXS.T C3N-01192 GBM WXS tumor CPT0087950009 CPT0087950009.WholeExome.RP-1303.bam 48554466558 BAM aligned CPTAC3 e1c25fd3-847b-40a1-9f40-d34f29ad3d53 f2619f75dc0457970ff35b8d481f9486 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor"} -C3N-01192.WXS.T.hg38 C3N-01192 GBM WXS tumor CPT0087950009 b4dc9536-147b-46cf-b704-dc9244cb3980_wxs_gdc_realn.bam 66820989081 BAM harmonized CPTAC3 09439c02-183b-4af9-a4dd-3b6376512893 85d84a0f65c281d8f27553b902de95d0 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor"} -C3N-01194.MethArray.Green.A C3N-01194 LSCC Methylation_Array tissue_normal CPT0079060009 203219670066_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 40cc20ed-f304-41bd-b1d0-1acea9be9793 31bf192938efc1376d8619dccea77dec {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.MethArray.Green.T C3N-01194 LSCC Methylation_Array tumor CPT0079050009 202178770045_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c431e60b-05d8-44f1-8217-2051fce8f0ef 9dc8945097bbc0ac61aa4b1059aa0272 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor"} -C3N-01194.MethArray.Red.A C3N-01194 LSCC Methylation_Array tissue_normal CPT0079060009 203219670066_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 fecd6868-be2c-405d-9b12-a3ca3115184c bc9890b18b9bd47b5f8500b609c51a6c {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.MethArray.Red.T C3N-01194 LSCC Methylation_Array tumor CPT0079050009 202178770045_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 fac05581-20cd-4ee3-9fc5-85c2507cfb7a a4bec145573aa6661d4ac9b1be0e0d30 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor"} -C3N-01194.miRNA-Seq.A.hg38 C3N-01194 LSCC miRNA-Seq tissue_normal CPT0079060006 3d0c36e1-ab8b-4672-9dde-466ff17b71b0_mirnaseq_gdc_realn.bam 289465460 BAM harmonized CPTAC3 bd56520e-8572-495d-8bee-4f0f96c1fc6f ae3bfbf19778af3133542a6c327e05f5 {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.miRNA-Seq.S34_L006_R1.A C3N-01194 LSCC miRNA-Seq tissue_normal CPT0079060006 181113_UNC31-K00269_0164_AH23NNBBXY_TAGCTT_S34_L006_R1_001.unaln.bam 264130426 BAM S34_L006_R1 unaligned CPTAC3 887f80ef-5f29-4197-b31c-a456c86b8df8 21028646163afe33da9202e580133e43 {"aliquot_tag": "ALQ_e1b94392", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.miRNA-Seq.S36_L008_R1.T C3N-01194 LSCC miRNA-Seq tumor CPT0079050006 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L008_R1_001.unaln.bam 174848729 BAM S36_L008_R1 unaligned CPTAC3 cb40e685-a34f-48a0-89a5-eb93fb80ffad fcc412a7da58773c4ab6ea04bccaf84c {"aliquot_tag": "ALQ_a6193942", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01194.miRNA-Seq.T.hg38 C3N-01194 LSCC miRNA-Seq tumor CPT0079050006 a5e454ee-0c7d-4a5a-879f-856d7600178a_mirnaseq_gdc_realn.bam 202538118 BAM harmonized CPTAC3 ed63f126-d531-4f3d-806a-d81af15a080f 45efe66aa0121b6795f2888a5a4c5dc1 {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor"} -C3N-01194.RNA-Seq.chimeric.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.chimeric.gdc_realn.bam 48329890 BAM chimeric harmonized CPTAC3 f48f56ed-92ca-483a-a8bc-700e7b4a7efb 1520f446ab5d806ad027b52382f00ecb {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.RNA-Seq.chimeric.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.chimeric.gdc_realn.bam 158433579 BAM chimeric harmonized CPTAC3 03acb33a-a706-4089-9060-047405485be0 f46c0ca6481ab03d0332d7c9dccaf09f {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor"} -C3N-01194.RNA-Seq.genomic.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.genomic.gdc_realn.bam 9605289202 BAM genomic harmonized CPTAC3 1b190480-217d-496b-9f4a-5d6015f62de4 eacdfaa05e771f285a25f6dccd5e775e {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.RNA-Seq.genomic.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.genomic.gdc_realn.bam 8497339252 BAM genomic harmonized CPTAC3 04341626-a157-4bdc-b406-3e28bf2ba14c 3879668d7ed3b7f1f66dd4ccc961bcc7 {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor"} -C3N-01194.RNA-Seq.S18_L005_R1.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4284636321 FASTQ S18_L005_R1 unaligned CPTAC3 c8f80524-a45c-47de-9262-48c781488318 1b3e0d5d616159dcbda47b9a20591d5c {"aliquot_tag": "ALQ_e1b94392", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.RNA-Seq.S18_L005_R2.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4679137235 FASTQ S18_L005_R2 unaligned CPTAC3 5ca5e4b2-d3bf-47b9-893c-35b8caf13fca 9fa514176d2224d2a8f8b14e1ba00f0f {"aliquot_tag": "ALQ_e1b94392", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.RNA-Seq.S2_L001_R1.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 3917404062 FASTQ S2_L001_R1 unaligned CPTAC3 dfc915d2-984c-466f-85e0-12a68f0413ad 149cb8a9c167dca2103a8635d89037e9 {"aliquot_tag": "ALQ_a6193942", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01194.RNA-Seq.S2_L001_R2.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 4230230199 FASTQ S2_L001_R2 unaligned CPTAC3 fe123d94-ffe4-4a32-8729-df53114e81b9 ca5cf5fac5627dc016d1031b4ae07bc2 {"aliquot_tag": "ALQ_a6193942", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01194.RNA-Seq.transcriptome.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.transcriptome.gdc_realn.bam 11299790638 BAM transcriptome harmonized CPTAC3 a4294fc8-4a30-409e-bcd2-d88fad0ef0e3 7622b7e68c8f649343d74a32ea71bf06 {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.RNA-Seq.transcriptome.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.transcriptome.gdc_realn.bam 11079203487 BAM transcriptome harmonized CPTAC3 ed525a96-ab7e-488e-9705-24393e28b46e 4a88b9155aa32995e841df329ef308ae {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor"} -C3N-01194.WGS.A C3N-01194 LSCC WGS tissue_normal CPT0079060009 CPT0079060009.WholeGenome.RP-1303.bam 52291412351 BAM aligned CPTAC3 1618b45e-373b-442f-b1cf-080e4120cfff 45dded24f2208c49eefa4505f755ee1b {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.WGS.A.hg38 C3N-01194 LSCC WGS tissue_normal CPT0079060009 5d4a1c91-6ea9-4957-bf09-2e47110b99c6_wgs_gdc_realn.bam 75933605428 BAM harmonized CPTAC3 79b4667f-a822-4230-a18d-e659697f618f 264caa0b3368cc60e02f7a632c9cd26d {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.WGS.N C3N-01194 LSCC WGS blood_normal CPT0079090002 CPT0079090002.WholeGenome.RP-1303.bam 73567985001 BAM aligned CPTAC3 c216401d-601c-4fbe-a08a-f4230c28cddc 4d1a3c8ff373327c5d3673e3c413b702 {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01194.WGS.N.hg38 C3N-01194 LSCC WGS blood_normal CPT0079090002 8e7cdb9e-d990-47dd-9487-ef12fbe05cc3_gdc_realn.bam 115706074766 BAM harmonized CPTAC3 fab46b3d-6bde-43a2-8633-1eed8864948d c4a4d6e7102af2c20fe5e09fa368325d {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01194.WGS.T C3N-01194 LSCC WGS tumor CPT0079050009 CPT0079050009.WholeGenome.RP-1303.bam 62022431239 BAM aligned CPTAC3 c0cea5b5-8301-4404-906b-e713262c1bf8 2ad1ccf3ac545a7ffb5d74a54b7a577f {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor"} -C3N-01194.WGS.T.hg38 C3N-01194 LSCC WGS tumor CPT0079050009 7a1a881e-51c3-46c4-bf78-fffcb8fde6b8_gdc_realn.bam 93685031070 BAM harmonized CPTAC3 d178dd49-5ac5-421b-9653-021451682f46 15b88612e2a3ebd3dcb55b722be40b0c {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor"} -C3N-01194.WXS.A C3N-01194 LSCC WXS tissue_normal CPT0079060009 CPT0079060009.WholeExome.RP-1303.bam 29230607242 BAM aligned CPTAC3 aa74901b-3a88-4aa7-9bbf-5769330dc817 40e5ad893461cd536d8b280ce63d087f {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.WXS.A.hg38 C3N-01194 LSCC WXS tissue_normal CPT0079060009 5d4a1c91-6ea9-4957-bf09-2e47110b99c6_wxs_gdc_realn.bam 39685634224 BAM harmonized CPTAC3 e8b2e887-2d06-4bc3-a352-928a16162f5e 03cc7bdb5ce3147d257e74c9a379bfb9 {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01194.WXS.N C3N-01194 LSCC WXS blood_normal CPT0079090002 CPT0079090002.WholeExome.RP-1303.bam 23620464102 BAM aligned CPTAC3 ea3322bd-44a4-41f8-a82a-84306e5a6b8b 00b46d26b8a1ccace3e104556eb7a426 {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01194.WXS.N.hg38 C3N-01194 LSCC WXS blood_normal CPT0079090002 8e7cdb9e-d990-47dd-9487-ef12fbe05cc3_gdc_realn.bam 31924995429 BAM harmonized CPTAC3 46d74866-1e75-4cc7-b4ff-edeed248f414 1511ff17fcfb5f6993002c20a5ba922f {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01194.WXS.T C3N-01194 LSCC WXS tumor CPT0079050009 CPT0079050009.WholeExome.RP-1303.bam 30384955979 BAM aligned CPTAC3 e2abf1e6-0f35-4c8e-8fc4-3570b16287a1 4ee23eab41c378016c4707b18378f858 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor"} -C3N-01194.WXS.T.hg38 C3N-01194 LSCC WXS tumor CPT0079050009 7a1a881e-51c3-46c4-bf78-fffcb8fde6b8_gdc_realn.bam 42502208887 BAM harmonized CPTAC3 0774820d-b180-46e1-90c9-6fef4686d7c2 af1e709a4488f5db3d6e1c7c73009069 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor"} -C3N-01196.MethArray.Green.T C3N-01196 GBM Methylation_Array tumor CPT0078580006 202184990052_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a6edc21c-210f-4540-af31-0e71681253cf 1a11260045e5b122cd8a3083a9b293cf {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor"} -C3N-01196.MethArray.Red.T C3N-01196 GBM Methylation_Array tumor CPT0078580006 202184990052_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 36140f52-6719-44e8-866e-83c278e9e99c b8b8a19ccdfb60b94d981269fb6419d6 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor"} -C3N-01196.miRNA-Seq.S8_L006_R1.T C3N-01196 GBM miRNA-Seq tumor CPT0078580013 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L006_R1_001.unaln.bam 206362742 BAM S8_L006_R1 unaligned CPTAC3 b3f2e525-38d7-494f-b587-3f293678cc8b 8b369807526a62c21fd0924258b17103 {"aliquot_tag": "ALQ_c142a23a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01196.miRNA-Seq.T.hg38 C3N-01196 GBM miRNA-Seq tumor CPT0078580013 d17d429b-e4bc-4188-ac35-559f73d39ae0_mirnaseq_gdc_realn.bam 236984162 BAM harmonized CPTAC3 a3d5b935-eef6-4183-af38-c7df1c81b50e ebfad0f3ba227f925abdb23a4ddf4054 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor"} -C3N-01196.RNA-Seq.chimeric.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.chimeric.gdc_realn.bam 49301826 BAM chimeric harmonized CPTAC3 a4520135-1db6-4d21-9a1a-436e9c7dbc07 f500129fbbd8c673d9336e8832249af6 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor"} -C3N-01196.RNA-Seq.genomic.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.genomic.gdc_realn.bam 8798799871 BAM genomic harmonized CPTAC3 de295c3b-b24b-4cfd-93be-efa5294f8e17 22959709261bd7ee843cf50d8ea6ff26 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor"} -C3N-01196.RNA-Seq.S4_L007_R1.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R1_001.fastq.gz 4050665258 FASTQ S4_L007_R1 unaligned CPTAC3 9cf704de-fe0f-426b-8067-eece3a94120e 50d4c3606258242455ed0a8b2a224108 {"aliquot_tag": "ALQ_c142a23a", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01196.RNA-Seq.S4_L007_R2.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4408066540 FASTQ S4_L007_R2 unaligned CPTAC3 0149b324-0f53-4425-aed2-1d785545cce6 80949e8ebd2b158ae3d8a34c8f92af12 {"aliquot_tag": "ALQ_c142a23a", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01196.RNA-Seq.transcriptome.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.transcriptome.gdc_realn.bam 8193991005 BAM transcriptome harmonized CPTAC3 60f3f6df-050d-4887-87ff-0a26ed58ea96 497883dde1927a1efb9a99c4e1834e66 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor"} -C3N-01196.WGS.N C3N-01196 GBM WGS blood_normal CPT0078600002 CPT0078600002.WholeGenome.RP-1303.bam 71018786399 BAM aligned CPTAC3 cb8193c9-0f40-4226-876c-7b72f711dc20 4fb1144345b56f4f3d63126958f6fabe {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal"} -C3N-01196.WGS.N.hg38 C3N-01196 GBM WGS blood_normal CPT0078600002 2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 109344171761 BAM harmonized CPTAC3 1f1c0db8-a938-444a-a1b7-d92ead28e401 6cce176a6f820703ad31842d804441b7 {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal"} -C3N-01196.WGS.T C3N-01196 GBM WGS tumor CPT0078580006 CPT0078580006.WholeGenome.RP-1303.bam 68162180374 BAM aligned CPTAC3 310215da-2316-478f-8fb2-1019b95b06ec d209cc657aaa72297a87fc7b10a5f810 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor"} -C3N-01196.WGS.T.hg38 C3N-01196 GBM WGS tumor CPT0078580006 f5139e18-95b6-4359-8018-f511b3cdbac5_gdc_realn.bam 102911297394 BAM harmonized CPTAC3 478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27 326931de2edf8ee8446073f328227f60 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor"} -C3N-01196.WXS.N C3N-01196 GBM WXS blood_normal CPT0078600002 CPT0078600002.WholeExome.RP-1303.bam 30617793152 BAM aligned CPTAC3 2acbdf4b-c9a6-4c95-8fdc-52c519f9530a 24a4abb8ebbe3d3d71fbafc493895a30 {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal"} -C3N-01196.WXS.N.hg38 C3N-01196 GBM WXS blood_normal CPT0078600002 2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 41828914319 BAM harmonized CPTAC3 e0050b57-78e0-4a0f-93b8-2b2d2d66f0e9 7bb19d4d2f160dbe460a6bfca1b669aa {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal"} -C3N-01196.WXS.T C3N-01196 GBM WXS tumor CPT0078580006 CPT0078580006.WholeExome.RP-1303.bam 31188011031 BAM aligned CPTAC3 fb79c6b2-9c6b-4219-97e3-414ef4eb9e1b 60430a45e2d163600e3ac671b21b396e {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor"} -C3N-01196.WXS.T.hg38 C3N-01196 GBM WXS tumor CPT0078580006 f5139e18-95b6-4359-8018-f511b3cdbac5_gdc_realn.bam 42631117716 BAM harmonized CPTAC3 cebdcd76-9051-4e6b-bde0-8a8a1bb3b545 48d464bdc9de0c528d81872518383790 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor"} -C3N-01197.MethArray.Green.T C3N-01197 GBM Methylation_Array tumor CPT0078480013 202178770109_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 45a231fd-0b3d-4c01-acee-31bae49b662b 354697f09318dc70ed3459a9df8ef7b0 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor"} -C3N-01197.MethArray.Red.T C3N-01197 GBM Methylation_Array tumor CPT0078480013 202178770109_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 352712cf-df49-4c7f-a1a0-20eee1d36399 d3c628c213e9acb98cb7287f8554fecd {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor"} -C3N-01197.miRNA-Seq.A.hg38 C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 600530ed-b90c-41b1-99c2-ac49a4e0c777_mirnaseq_gdc_realn.bam 293890942 BAM harmonized CPTAC3 9b91c568-2074-483d-83fc-60e02c14c5b0 06f28eb5fea967dcc6eeef9aa1ad10ec {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.miRNA-Seq.S17_L005_R1.A C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGGCC_S17_L005_R1_001.unaln.bam 148198335 BAM S17_L005_R1 unaligned CPTAC3 b453177a-e844-4435-ae74-c4af27fcd7bd a16c60558c47218a0607a30b7c351699 {"aliquot_tag": "ALQ_f4956881", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.miRNA-Seq.S18_L003_R1.T C3N-01197 GBM miRNA-Seq tumor CPT0078480009 181113_UNC31-K00269_0164_AH23NNBBXY_TAATCG_S18_L003_R1_001.unaln.bam 298106933 BAM S18_L003_R1 unaligned CPTAC3 51dd4fa7-3518-4a88-94bb-5adba591ef98 2b92da45ba6c81f77463b866aceed47c {"aliquot_tag": "ALQ_f3d0a9c0", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01197.miRNA-Seq.S20_L002_R1.A C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L002_R1_001.unaln.bam 123101063 BAM S20_L002_R1 unaligned CPTAC3 3ed18de1-4d58-4d6f-813e-3cb48b84fc78 cc4bfcee9dbfdeef27ab13cb0ca1f6ac {"aliquot_tag": "ALQ_f4956881", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.miRNA-Seq.T.hg38 C3N-01197 GBM miRNA-Seq tumor CPT0078480009 fc3f80e4-8717-45c5-9248-98daf00e5564_mirnaseq_gdc_realn.bam 328842663 BAM harmonized CPTAC3 69198177-80d7-4645-801d-47e40d6fcaca 41de271c56fa13e66debd10122fb6ac4 {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor"} -C3N-01197.RNA-Seq.chimeric.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.chimeric.gdc_realn.bam 206730101 BAM chimeric harmonized CPTAC3 e62afb1f-ca78-4c5d-aba7-481f7bf9789b a9691b3de53d1fc53820b2e4314941f4 {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.RNA-Seq.chimeric.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.chimeric.gdc_realn.bam 58839962 BAM chimeric harmonized CPTAC3 deb70bba-d681-491a-a4c5-25e61d0bb738 38da9d1804051ac99b68107db76e1b6d {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor"} -C3N-01197.RNA-Seq.genomic.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.genomic.gdc_realn.bam 7339367256 BAM genomic harmonized CPTAC3 ffe3453d-a051-4309-ad40-267a041fcc47 e4b4299d3563a2b8719585ad58710c4a {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.RNA-Seq.genomic.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.genomic.gdc_realn.bam 8774243817 BAM genomic harmonized CPTAC3 7fc90181-3c1b-46c8-8219-cda94cdbf759 4e759a8e9a147dd7d33c726dea5d65a9 {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor"} -C3N-01197.RNA-Seq.S5_L008_R1.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3932675598 FASTQ S5_L008_R1 unaligned CPTAC3 75e83f5d-ad37-4018-ae11-bc247d76bf0a 16d19bae83e24097ad9fb909f41ead42 {"aliquot_tag": "ALQ_f3d0a9c0", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01197.RNA-Seq.S5_L008_R2.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4335422641 FASTQ S5_L008_R2 unaligned CPTAC3 7704b4c6-fc08-4876-9071-7b027ecc807e f89de0faf11f827abc86bf65fac4ab09 {"aliquot_tag": "ALQ_f3d0a9c0", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01197.RNA-Seq.S77_L008_R1.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ S77_L008_R1 unaligned CPTAC3 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 a0584cec511dc00d3a67653e09522e01 {"aliquot_tag": "ALQ_f4956881", "sample": "S77", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.RNA-Seq.S77_L008_R2.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R2_001.fastq.gz 3501805122 FASTQ S77_L008_R2 unaligned CPTAC3 3746a172-d4af-4f52-9dd9-01e6db58f3d7 ee526db09d85ec629a3ca1f93375bd87 {"aliquot_tag": "ALQ_f4956881", "sample": "S77", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.RNA-Seq.transcriptome.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.transcriptome.gdc_realn.bam 7571038644 BAM transcriptome harmonized CPTAC3 e31563aa-79a2-460f-ae72-f127fdefcbbb c5f187ddc9478a22245eb4d5bcfe9ff9 {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.RNA-Seq.transcriptome.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.transcriptome.gdc_realn.bam 8979310482 BAM transcriptome harmonized CPTAC3 dd93d1cf-5708-477d-997c-f337cd540ff8 b300de4054511d801fe2a7b040249a7f {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor"} -C3N-01197.WGS.N C3N-01197 GBM WGS blood_normal CPT0078500002 CPT0078500002.WholeGenome.RP-1303.bam 66772005182 BAM aligned CPTAC3 06bad4e8-1b97-41ad-bbe3-e053c16fca3f 5c992aff6785db66e86a0434c1bb4406 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01197.WGS.N.hg38 C3N-01197 GBM WGS blood_normal CPT0078500002 ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 101210139062 BAM harmonized CPTAC3 8d103cd5-b6ba-499c-b86d-ee90e7722972 1bfd8870fe386bcf70737b557d1dda71 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01197.WGS.T C3N-01197 GBM WGS tumor CPT0078480013 CPT0078480013.WholeGenome.RP-1303.bam 78605674127 BAM aligned CPTAC3 c8a24121-4eb7-4d42-8835-62bf38c27b67 56882ff859a33ee60f362d0acafc45f3 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor"} -C3N-01197.WGS.T.hg38 C3N-01197 GBM WGS tumor CPT0078480013 8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 119236219494 BAM harmonized CPTAC3 69bc2a10-0aee-46d4-8974-e138bea74760 17c0106154f4160e1d04e81a6664e147 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor"} -C3N-01197.WXS.A C3N-01197 GBM WXS tissue_normal CPT0402600013 CPT0402600013.WholeExome.RP-1303.bam 17913496431 BAM aligned CPTAC3 d74445a1-60a3-4d33-a053-cb9ef300db97 c10030ec04c9ce713ddc5bdf8042e14f {"aliquot_tag": "ALQ_84ff9c0e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.WXS.A.hg38 C3N-01197 GBM WXS tissue_normal CPT0402600013 e5c26e9d-b137-4370-8344-f888831ec23e_wxs_gdc_realn.bam 24780989364 BAM harmonized CPTAC3 5b38e81d-3373-4106-8528-4730fc388607 c936ae5e8cf8264923ac6e322ef67ada {"aliquot_tag": "ALQ_84ff9c0e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01197.WXS.N C3N-01197 GBM WXS blood_normal CPT0078500002 CPT0078500002.WholeExome.RP-1303.bam 27122734221 BAM aligned CPTAC3 2e853e58-065a-4a19-b3cf-1066f8d7dddb 22028a96afde9dbe69c2dd26673a8838 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01197.WXS.N.hg38 C3N-01197 GBM WXS blood_normal CPT0078500002 ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 36637489156 BAM harmonized CPTAC3 ba871c1f-1766-4008-8b79-29ec2148b586 037cce1a0c462d957ade8dda8f3cd8c2 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01197.WXS.T C3N-01197 GBM WXS tumor CPT0078480013 CPT0078480013.WholeExome.RP-1303.bam 31119460682 BAM aligned CPTAC3 742678c4-a327-4aef-be8d-38b26605cb19 1a1a4aa605f5b01ab0b965c616db064b {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor"} -C3N-01197.WXS.T.hg38 C3N-01197 GBM WXS tumor CPT0078480013 8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 43619971997 BAM harmonized CPTAC3 813f42ab-91e9-4dbc-8d09-bf15289946f8 9bb05be85ddad759ddbc130f235cfa58 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor"} -C3N-01199.MethArray.Green.T C3N-01199 GBM Methylation_Array tumor CPT0457680011 205987780179_R05C01_Grn.idat 13677940 IDAT Green NA CPTAC3 7cfef310-16d3-4e83-ade2-cab54a591e2a df039c0706457135585e665474873fa2 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor"} -C3N-01199.MethArray.Red.T C3N-01199 GBM Methylation_Array tumor CPT0457680011 205987780179_R05C01_Red.idat 13677940 IDAT Red NA CPTAC3 82e35981-d14d-4901-b85a-0da82e7dbf87 e28beecf5bc080a642ce933c92e170b1 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor"} -C3N-01199.miRNA-Seq.S7_L003_R1.T C3N-01199 GBM miRNA-Seq tumor CPT0457680008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTATAC_S7_L003_R1_001.unaln.bam 264368830 BAM S7_L003_R1 unaligned CPTAC3 64dab22d-ddf0-4ceb-9775-95cb13aba156 63b556759c4323d4308c452bf5397ad1 {"aliquot_tag": "ALQ_209e1ec5", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01199.miRNA-Seq.T.hg38 C3N-01199 GBM miRNA-Seq tumor CPT0457680008 35e119ee-ff02-4ac2-9cfa-bc26defda320_mirnaseq_gdc_realn.bam 301722755 BAM harmonized CPTAC3 1d9c73a5-81bc-451c-a43a-d906405f7445 38c44fa8740549cf939d0ae836fe13d0 {"aliquot_tag": "ALQ_209e1ec5", "gdc_sample_type": "Primary Tumor"} -C3N-01199.RNA-Seq.S4_L006_R1.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R1_001.fastq.gz 5000286535 FASTQ S4_L006_R1 unaligned CPTAC3 742a45a1-2eb8-44d5-912e-8747b99a93d4 2153ef9bd3c1d42588e4749539a8fdbf {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01199.RNA-Seq.S4_L006_R2.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R2_001.fastq.gz 5203845866 FASTQ S4_L006_R2 unaligned CPTAC3 d457808c-dc8e-4904-9c85-9a6c5fff4b0a 02bce17f1695973dd385d8cea6689575 {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_3a5a9d02.miRNA-Seq.S26_L002_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L002_R1_001.unaln.bam 241941968 BAM S26_L002_R1 unaligned CPTAC3 61f7977f-8b97-47aa-b0bb-192d3ec71e0b 240422199a8feb2dc4a5680bee449dc1 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_3a5a9d02.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 daec41c7-dc35-4bee-bb66-94e95108d429_mirnaseq_gdc_realn.bam 268769840 BAM harmonized CPTAC3 8feda69f-b67c-4209-b8b8-9d2df3df00ca d37a9dfd293460ee9f9e09c7085d41dd {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_3a5a9d02.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.chimeric.gdc_realn.bam 70328673 BAM chimeric harmonized CPTAC3 57af4e09-abf7-4d40-93dc-49108577f9dd e1211762a0a1130cd82aae4e2e03a074 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_3a5a9d02.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.genomic.gdc_realn.bam 8820437909 BAM genomic harmonized CPTAC3 87d3f301-3322-4bd1-80b6-d156f8a98656 b1aeb4e31ff2f3e92551a11e656ae554 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_3a5a9d02.RNA-Seq.S8_L002_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R1_001.fastq.gz 4438109303 FASTQ S8_L002_R1 unaligned CPTAC3 30628661-05d5-4fe1-be42-ee30dce69ec0 3fe79581d9ef6d827a13ec2628f09aa0 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_3a5a9d02.RNA-Seq.S8_L002_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R2_001.fastq.gz 4848622324 FASTQ S8_L002_R2 unaligned CPTAC3 10047d32-3565-4e59-be8d-d18f00cf4da7 acaf751e70b615b512f97cf10aeadd70 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_3a5a9d02.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.transcriptome.gdc_realn.bam 11325945246 BAM transcriptome harmonized CPTAC3 8874fcac-0adf-4854-891f-98b80e838d5b 8142a838db32e50470f84496caf3655a {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_6b3a9db.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075120012 204372030161_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d258d649-b531-429f-a9aa-407f445dcf13 706a2be41697b6ada0062261c87a6003 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_6b3a9db.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075120012 204372030161_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 b76ec06c-d83c-4147-9651-07b7ac4500ae b610cd049e08b800f2ba3fc2d4b5e1ff {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_6b3a9db.WGS.T C3N-01200 CCRCC WGS tumor CPT0075120012 CPT0075120012.WholeGenome.RP-2158.bam 40340711658 BAM aligned CPTAC3 861e17a6-edbd-43bf-ba45-b05f70c40c8a 5457297c740ee253de88dfd63ee75da9 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_6b3a9db.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075120012 6b2820db-0518-4a8f-8969-ad5b3fffb291_wgs_gdc_realn.bam 116620450320 BAM harmonized CPTAC3 36c089ae-123a-4030-a41c-ea09122b4068 5b4f4d5c9bf909d53c0cc7dae637fbec {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_6b3a9db.WXS.T C3N-01200 CCRCC WXS tumor CPT0075120012 CPT0075120012.WholeExome.RP-1303.bam 23082960311 BAM aligned CPTAC3 6d28cc3b-098e-4ff9-8652-8efa52af5a30 21b037efc9cf5b2a76d8375348239f36 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_6b3a9db.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075120012 6b2820db-0518-4a8f-8969-ad5b3fffb291_wxs_gdc_realn.bam 31335243033 BAM harmonized CPTAC3 85922135-ab55-4c2b-9a78-371f22aae54e b80ad213ff80d9644b43c1bec43ba5b9 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_73ab4b2.miRNA-Seq.S30_L004_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075140009 200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L004_R1_001.unaln.bam 216324191 BAM S30_L004_R1 unaligned CPTAC3 720cb1c4-b337-4511-89bb-c9ca5b1d8e4d a61803e54dabfca9182032d71612a432 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_73ab4b2.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075140009 973a1136-5bdb-408b-bb02-82c7d86add09_mirnaseq_gdc_realn.bam 238141872 BAM harmonized CPTAC3 e8708b1f-1150-42bc-9866-074dc495ec75 0aa51153497a772e628a11344488550b {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_73ab4b2.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.chimeric.gdc_realn.bam 246740493 BAM chimeric harmonized CPTAC3 898daa61-8272-4b2b-a474-092a866a2822 da62ee7ce89fef27d603e5bc7b825046 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_73ab4b2.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.genomic.gdc_realn.bam 9426360529 BAM genomic harmonized CPTAC3 9f1e41b1-f4de-416b-96af-9aa18b2a04cc fc77cc76b04f9ac5aca992904c594b79 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_73ab4b2.RNA-Seq.S3_L001_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R1_001.fastq.gz 4434094111 FASTQ S3_L001_R1 unaligned CPTAC3 1c2bca41-bae5-42f4-9001-923894bc5448 fa9f31996a9145aa4311614172a00483 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_73ab4b2.RNA-Seq.S3_L001_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R2_001.fastq.gz 5377537098 FASTQ S3_L001_R2 unaligned CPTAC3 af9b177e-627b-45d3-8eaf-a1a6dd68dd33 e958bf5c0139ab3372bf7ecd501dea59 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_73ab4b2.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.transcriptome.gdc_realn.bam 12469354286 BAM transcriptome harmonized CPTAC3 be952192-9473-4939-887d-d45b1bdc5d64 d023a1c6a8b5f2467a1a57865e1a340f {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_7dfae7d2.miRNA-Seq.S20_L002_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075160009 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L002_R1_001.unaln.bam 267558533 BAM S20_L002_R1 unaligned CPTAC3 cdd2bbe0-7628-44a4-b65d-e645290c4fd3 253fcc2469290f5e54935bccae86fa0f {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_7dfae7d2.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075160009 e7441cf4-70e6-4fdf-ace4-a2c81b051a90_mirnaseq_gdc_realn.bam 297546356 BAM harmonized CPTAC3 037e2e79-6545-4654-9ce0-a9efdf76b82f 6e3ceb68b556eff4a656bbaeb2bdfe9c {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_7dfae7d2.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.chimeric.gdc_realn.bam 45401910 BAM chimeric harmonized CPTAC3 d2f68940-2a45-4336-8df5-557d8c56717b f4abd893076fc6f0b9f789419b19edd5 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_7dfae7d2.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.genomic.gdc_realn.bam 7686721279 BAM genomic harmonized CPTAC3 755236f7-ca80-4ab4-ba03-ed633741a5eb a63835052e75b8279388585cc46bd8ac {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_7dfae7d2.RNA-Seq.S25_L007_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R1_001.fastq.gz 3613492140 FASTQ S25_L007_R1 unaligned CPTAC3 bfb3ff85-07de-41ff-8de3-7b97721ecd15 61b1bdbab74a21e1175e016647cb4d51 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_7dfae7d2.RNA-Seq.S25_L007_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R2_001.fastq.gz 4159998543 FASTQ S25_L007_R2 unaligned CPTAC3 1f84a087-24d2-4c6c-b25e-638176a6e5b5 8409aab55102c0a282939e6795c3b090 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_7dfae7d2.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.transcriptome.gdc_realn.bam 9607739180 BAM transcriptome harmonized CPTAC3 0076192e-6b77-4f09-a110-bdf90e8626eb eb7a873f1528f02d8db64f14c2291db7 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_887a4112.miRNA-Seq.S29_L005_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075120009 200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L005_R1_001.unaln.bam 342099490 BAM S29_L005_R1 unaligned CPTAC3 c4b8ea54-3e27-4a29-99b3-4f2d599b38ab 75fe50bb036000486e5fd9d231dd6d78 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_887a4112.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075120009 87dee344-57bc-4dd9-951e-86a5a3c43232_mirnaseq_gdc_realn.bam 372196853 BAM harmonized CPTAC3 3b57ad99-36a2-4b2c-9cf9-0719a26613a8 b63e5d78be94c61da05c7a3e5c0115bb {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_887a4112.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.chimeric.gdc_realn.bam 133467044 BAM chimeric harmonized CPTAC3 5a1a45f4-0f4d-44ee-a020-c90dce7ac045 789838d217852be43e5b6bdad18eab7d {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_887a4112.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.genomic.gdc_realn.bam 5969280822 BAM genomic harmonized CPTAC3 8a760026-8e70-4143-8a6a-b2987b2f740d 6ff02b6ca0020cc7dd89feba9079eb92 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_887a4112.RNA-Seq.S1_L001_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 2712382703 FASTQ S1_L001_R1 unaligned CPTAC3 54a0b120-5335-4c89-83b8-3a48ef881d16 8ae2511cb4b9e4e6d3c248bb3c74c772 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_887a4112.RNA-Seq.S1_L001_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3355844855 FASTQ S1_L001_R2 unaligned CPTAC3 36fe36fd-4ec7-4b4b-978f-cc9fddcd3cb1 f4493bff85d611767d33ea4608a9831f {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_887a4112.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.transcriptome.gdc_realn.bam 7951440215 BAM transcriptome harmonized CPTAC3 d95be18d-b065-425f-9012-370b11839818 8ef1e450759784aeb29a4ce06b40eab5 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_89f35c7b.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075140012 204367490066_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 348cf7cc-1f8c-43b8-b674-9765d113ecf3 5bc34987e2a3ed02dbc33dead7154dba {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_89f35c7b.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075140012 204367490066_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 6d92c5ab-c2a3-4ff8-9a22-b0d54e06cc79 11fad5dcc53fbfc08f4f145867479114 {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_89f35c7b.WGS.T C3N-01200 CCRCC WGS tumor CPT0075140012 CPT0075140012.WholeGenome.RP-2158.bam 34365370232 BAM aligned CPTAC3 f894a2ce-3f0f-4a4b-88bc-361a44d9371c c38a9beb7a1901d53121b972b635ad8e {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_89f35c7b.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075140012 f5496dd4-459d-4d29-859e-e662482d19f2_wgs_gdc_realn.bam 105362460213 BAM harmonized CPTAC3 a333449a-a812-44e5-84c7-d1602c4b3908 00187a532ab0f3e732ebc94b7e4eced8 {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_89f35c7b.WXS.T C3N-01200 CCRCC WXS tumor CPT0075140012 CPT0075140012.WholeExome.RP-1303.bam 17652148334 BAM aligned CPTAC3 85d3d62f-66c7-4401-b60d-d111390beb20 622941b082d68dcfa862bc301a307609 {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_89f35c7b.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075140012 f5496dd4-459d-4d29-859e-e662482d19f2_wxs_gdc_realn.bam 24274779721 BAM harmonized CPTAC3 48cd0261-b204-4b9a-85c2-483fa863b9fb a94fe79fa003030d16f6a0ddd9aab9fe {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_b49375cb.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075150012 204372030090_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2edef7b0-ed8e-4b67-8942-38bf97e24a9e 6d2b4f11271494813dee0ee5afa93fbc {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_b49375cb.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075150012 204372030090_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 5bbbdfec-5cf9-44fc-b4af-fa87709f55f3 5d2ed1af19018249a7f680c3894aec9f {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_b49375cb.WGS.T C3N-01200 CCRCC WGS tumor CPT0075150012 CPT0075150012.WholeGenome.RP-2158.bam 26188605598 BAM aligned CPTAC3 496f59e9-979c-466c-adcc-003d0918a482 e18a75d25cf5fbee5f1c3378080fcf83 {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_b49375cb.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075150012 f8d151d1-e92d-4cd4-b3ee-047e664ae7ba_wgs_gdc_realn.bam 78038774891 BAM harmonized CPTAC3 169271e8-b862-4c43-af60-3fe0a2fc8034 d85d78130ae5b7a900af5f3c09814536 {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_b49375cb.WXS.T C3N-01200 CCRCC WXS tumor CPT0075150012 CPT0075150012.WholeExome.RP-1303.bam 17384489169 BAM aligned CPTAC3 64b4c77e-805a-4c3a-8334-b4d6419b0bfa 2e9dad3cd3c567af041fd387b9c6e50a {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_b49375cb.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075150012 f8d151d1-e92d-4cd4-b3ee-047e664ae7ba_wxs_gdc_realn.bam 23925069381 BAM harmonized CPTAC3 27b7e1b6-9d5d-4868-9c7b-d31d47a70ccc 0c0549bba735588494d1884e32489c9f {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_f3330f1b.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075160012 204372030023_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 45deb597-b3eb-4918-81ee-e386fb0e93e9 24a0c1e10008a3a1b659507de3022f9c {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_f3330f1b.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075160012 204372030023_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 2221cb59-81d0-43bd-a9d2-14b59ac7da55 ee442d78851ca205296ce7ec9b641274 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_f3330f1b.WGS.T C3N-01200 CCRCC WGS tumor CPT0075160012 CPT0075160012.WholeGenome.RP-2158.bam 32202097523 BAM aligned CPTAC3 04c42b65-5090-4ce2-8f7e-412fd9d33147 b57d16d69222d9affa02929bfb9204d3 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_f3330f1b.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075160012 b7a42d2c-dcf9-4a38-b408-c0ed23354171_wgs_gdc_realn.bam 96507509265 BAM harmonized CPTAC3 349d8502-6f99-41da-8e96-833a0f288bdf fbf120d0e55925a1db4bc2b762ca1151 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_f3330f1b.WXS.T C3N-01200 CCRCC WXS tumor CPT0075160012 CPT0075160012.WholeExome.RP-1303.bam 21644696504 BAM aligned CPTAC3 f563bce9-fe03-417f-9634-f1aa95057fa3 d50528e4c919bffd7b756beb1dd429a1 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.DUP_f3330f1b.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075160012 b7a42d2c-dcf9-4a38-b408-c0ed23354171_wxs_gdc_realn.bam 30016140574 BAM harmonized CPTAC3 2f5e8d9c-7408-45c6-a5cd-0867db5449f2 0b3e4b6c10453c1e4a0a9d9c77f9744c {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01200.MethArray.Green.A C3N-01200 CCRCC Methylation_Array tissue_normal CPT0075170009 203027380024_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 13f31e09-fb0c-4826-98b0-35e9ac240679 a4532e636b295ff7479a800be4fab853 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075130009 202184990059_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3ceb6106-0d95-40e2-8993-b545fc0ea3ef cc153bcdbbc599278d49da61362a91a4 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.MethArray.Red.A C3N-01200 CCRCC Methylation_Array tissue_normal CPT0075170009 203027380024_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 f7f0cb36-33c7-4b3e-8413-d1bd55f6dd9a 99a0843b458a7897630d1e7fcd90a5c2 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075130009 202184990059_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 80fe3577-8568-4647-9436-2e003699def0 1f6af9bae745b1370c9554f62572ce37 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.miRNA-Seq.A.hg38 C3N-01200 CCRCC miRNA-Seq tissue_normal CPT0075170006 2d6d11b2-7718-435d-a2a2-9f0cf3f8ab9b_mirnaseq_gdc_realn.bam 223988242 BAM harmonized CPTAC3 760434c3-3830-4e14-b830-711d789bd058 6a0f61f4f35d447f85699df1256d6f00 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.miRNA-Seq.S15_L003_R1.A C3N-01200 CCRCC miRNA-Seq tissue_normal CPT0075170006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L003_R1_001.unaln.bam 199182812 BAM S15_L003_R1 unaligned CPTAC3 2b9b314d-440b-41cd-8aca-2d67b15669e6 d9200af50be8caf046562c1e87932123 {"aliquot_tag": "ALQ_d025d3f3", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.miRNA-Seq.S45_L002_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075130006 181113_UNC31-K00269_0164_AH23NNBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 185603439 BAM S45_L002_R1 unaligned CPTAC3 7a633b33-7a00-43e0-898d-ae3a2dc9f54f 64a0b7a070a7845f7f2cc968876dde35 {"aliquot_tag": "ALQ_25a57533", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075130006 4a756680-4bd4-4b4e-a369-b9f0750a5f08_mirnaseq_gdc_realn.bam 210171625 BAM harmonized CPTAC3 57983b38-a179-4161-9301-054a8d52af85 f02c3595d130bd4491b792c124d5c80a {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor"} -C3N-01200.RNA-Seq.chimeric.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.chimeric.gdc_realn.bam 45817811 BAM chimeric harmonized CPTAC3 ac2d3db1-e8a2-4898-82ff-3e002ab71eda 284c66411735122f11bd065d91c420d3 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.chimeric.gdc_realn.bam 183246864 BAM chimeric harmonized CPTAC3 b3d89d00-9544-459c-ba09-9da6b85ea580 73adce848ce3bb6e64ab8a2b15c535fb {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor"} -C3N-01200.RNA-Seq.genomic.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.genomic.gdc_realn.bam 7778328329 BAM genomic harmonized CPTAC3 e44bb064-c226-45df-81b6-e9f54e8295c4 3e3be7d8df09741bec1456f83afd92d2 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.genomic.gdc_realn.bam 7598400010 BAM genomic harmonized CPTAC3 be7604a6-a252-411a-954d-83cb6ff1ff9f c494a029b4e083a510f066bc198fdeb2 {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor"} -C3N-01200.RNA-Seq.S11_L003_R1.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R1_001.fastq.gz 3995140615 FASTQ S11_L003_R1 unaligned CPTAC3 3622b01d-1aed-4d4c-bf81-6f3d3208683f 8c671044dd44df6775bd3c5f6f6c4ddd {"aliquot_tag": "ALQ_d025d3f3", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.RNA-Seq.S11_L003_R2.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R2_001.fastq.gz 4271303352 FASTQ S11_L003_R2 unaligned CPTAC3 8fe43892-e94a-4789-be90-c32591c4a108 b28a1bb504bb81ff6a57b4f7aedcc1a6 {"aliquot_tag": "ALQ_d025d3f3", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.RNA-Seq.S24_L007_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R1_001.fastq.gz 3917366988 FASTQ S24_L007_R1 unaligned CPTAC3 fb2e9eb7-49a1-4810-ad31-58b4411cdd05 2db6ad01747f10e1687299bbffc72669 {"aliquot_tag": "ALQ_25a57533", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01200.RNA-Seq.S24_L007_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R2_001.fastq.gz 4168322645 FASTQ S24_L007_R2 unaligned CPTAC3 def5db7e-16df-4a5f-8d32-ad1dac6b90f2 489ae6a1d73ba66e25f9ea4e0a43b23d {"aliquot_tag": "ALQ_25a57533", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.RNA-Seq.transcriptome.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.transcriptome.gdc_realn.bam 9731230653 BAM transcriptome harmonized CPTAC3 d377d7cb-f860-4a63-8bcc-a1e717cc95b2 b40867af8ea407b70e6a9c55b411ec82 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.transcriptome.gdc_realn.bam 10953737304 BAM transcriptome harmonized CPTAC3 1624fc56-ae22-4979-a882-a5fde95db2c0 b5b8034b647f5184becc552d3ed66578 {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor"} -C3N-01200.WGS.A C3N-01200 CCRCC WGS tissue_normal CPT0075170009 CPT0075170009.WholeGenome.RP-1303.bam 53781174676 BAM aligned CPTAC3 9967b80d-f8d4-4cb0-9e6a-6ce7227b5e18 0e426c27ad566218ab01b9f91f2a3137 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.WGS.A.hg38 C3N-01200 CCRCC WGS tissue_normal CPT0075170009 6197fa8a-3d40-4e44-a89c-afcc3ad4d564_wgs_gdc_realn.bam 78460551401 BAM harmonized CPTAC3 b982ca99-b3d8-4021-8dd3-3a727eae6f22 e7ba12ed6ef08916a093d8e826acce06 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.WGS.N C3N-01200 CCRCC WGS blood_normal CPT0075240001 CPT0075240001.WholeGenome.RP-1303.bam 69253046912 BAM aligned CPTAC3 7dfca637-963d-4c96-902e-f64beeb6bed3 0eccb4b4392aac4e12660bdbcda49f51 {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01200.WGS.N.hg38 C3N-01200 CCRCC WGS blood_normal CPT0075240001 985b6a8c-9bee-4c84-beb6-289937143d49_gdc_realn.bam 102398962395 BAM harmonized CPTAC3 f09fc36d-1f58-4903-8bcb-6476a64477ce 14e4163f764cd1cd1d27df280c7f4bac {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01200.WGS.T C3N-01200 CCRCC WGS tumor CPT0075130009 CPT0075130009.WholeGenome.RP-1303.bam 79011289140 BAM aligned CPTAC3 70d11e82-1f94-4713-a5bd-04199336324d b8b265b3ea63e195bd84260c49b88808 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075130009 0d15156f-e4c5-45a2-8904-33c991c2fd17_gdc_realn.bam 116900395009 BAM harmonized CPTAC3 4f30ea56-2e99-47e0-85ae-c13cd5bdbcea 63b90353ab06239a77fa0ab5561075fc {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.WXS.A C3N-01200 CCRCC WXS tissue_normal CPT0075170009 CPT0075170009.WholeExome.RP-1303.bam 33367667430 BAM aligned CPTAC3 748d5256-4426-4cd2-bff2-1db7bbc0432e 9f947e47d8df209d6496921e0afd7ba2 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.WXS.A.hg38 C3N-01200 CCRCC WXS tissue_normal CPT0075170009 6197fa8a-3d40-4e44-a89c-afcc3ad4d564_wxs_gdc_realn.bam 44911088732 BAM harmonized CPTAC3 458e55be-e2d1-4164-b7d2-4ea808be7d57 71e375365d6e9c02fc92baef0faf7325 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01200.WXS.N C3N-01200 CCRCC WXS blood_normal CPT0075240001 CPT0075240001.WholeExome.RP-1303.bam 31160390089 BAM aligned CPTAC3 11a7c5f1-b580-411c-9318-f63d567110b7 9f0f2d6771f6b40f6c8c8964c230e3d3 {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01200.WXS.N.hg38 C3N-01200 CCRCC WXS blood_normal CPT0075240001 985b6a8c-9bee-4c84-beb6-289937143d49_gdc_realn.bam 42998051781 BAM harmonized CPTAC3 5ed7729f-924d-4be2-ac4d-9b8722e10eb9 083cd6e59c0460f28dd48fdcb5ff9c55 {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01200.WXS.T C3N-01200 CCRCC WXS tumor CPT0075130009 CPT0075130009.WholeExome.RP-1303.bam 26200407707 BAM aligned CPTAC3 9534c18d-4932-4e28-a4c8-208dec038af6 73a424efcb860c6e669b64c20caccd71 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor"} -C3N-01200.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075130009 0d15156f-e4c5-45a2-8904-33c991c2fd17_gdc_realn.bam 36200071299 BAM harmonized CPTAC3 7ede714a-8cfc-4b71-a2d2-1e78c68ce6cf e908c064d993b2a58ab73c7cad939f98 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor"} -C3N-01211.MethArray.Green.T C3N-01211 UCEC Methylation_Array tumor CPT0075900009 202176290046_R08C01_Grn.idat 13676215 IDAT Green NA CPTAC3 07d13ad1-12a3-4cc8-974e-a8b0e47f5cd7 aa58e582889db6aeed9da59c19d6d9a8 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor"} -C3N-01211.MethArray.Red.T C3N-01211 UCEC Methylation_Array tumor CPT0075900009 202176290046_R08C01_Red.idat 13676215 IDAT Red NA CPTAC3 cc27c8da-ccc7-48db-ac0a-05811406b761 4e16b278ab5abbfe81541f18fd929aed {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor"} -C3N-01211.miRNA-Seq.S41_L005_R1.T C3N-01211 UCEC miRNA-Seq tumor CPT0075900006 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L005_R1_001.unaln.bam 167252257 BAM S41_L005_R1 unaligned CPTAC3 366b9a85-25c7-44f9-bb90-a449939af4cf 9c3f17d245bbb392a394810277148b6f {"aliquot_tag": "ALQ_8e568d8e", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01211.miRNA-Seq.T.hg38 C3N-01211 UCEC miRNA-Seq tumor CPT0075900006 b9641008-9c73-4e88-9ad6-408686c23501_mirnaseq_gdc_realn.bam 183880492 BAM harmonized CPTAC3 80556270-a9ef-4b05-a115-538826983613 7514a9dbd94a57ba547f5b3354b185f7 {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.chimeric.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.chimeric.gdc_realn.bam 84200959 BAM chimeric harmonized CPTAC3 5d2519b2-43d1-42e4-8c21-87030f077fe1 1e4e442b857b0f68bc525d8403f3d57f {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.chimeric.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.chimeric.gdc_realn.bam 233469227 BAM chimeric harmonized CPTAC3 4bdfbc75-2949-4f4e-999d-b072582d8c28 999f7ea0645c9d1e307e6394d838a49d {"aliquot_tag": "ALQ_9f72ed8d", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.genomic.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.genomic.gdc_realn.bam 8147565319 BAM genomic harmonized CPTAC3 bfab949d-c34a-43c4-958e-d0f8f1ea9363 e81114b49fc4a03a4621013f726c9e7b {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.genomic.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.genomic.gdc_realn.bam 13141106631 BAM genomic harmonized CPTAC3 9a084d84-99d8-4530-95ca-955c3f40fd9f b2d48667fee45057bbd1ce9c8d6d9449 {"aliquot_tag": "ALQ_9f72ed8d", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.S87_R1.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R1_001.fastq.gz 8339586889 FASTQ S87_R1 unaligned CPTAC3 df324cba-88cc-4f37-ad5f-f6ff1e73f953 e2d1c9634b40acc0836d99e9da80e66b {"aliquot_tag": "ALQ_9f72ed8d", "sample": "S87", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.S87_R2.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R2_001.fastq.gz 8608755124 FASTQ S87_R2 unaligned CPTAC3 e61827ed-8251-4e1a-b9e5-9563d3230230 8b33dece1d610d3879f010d3b18a99db {"aliquot_tag": "ALQ_9f72ed8d", "sample": "S87", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.S8_L008_R1.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R1_001.fastq.gz 4274317593 FASTQ S8_L008_R1 unaligned CPTAC3 420d5f06-1231-4f16-b090-9e27da0b3c83 9e86ceee3a441dd91286c74cb7c0a3e9 {"aliquot_tag": "ALQ_8e568d8e", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.S8_L008_R2.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R2_001.fastq.gz 4562443542 FASTQ S8_L008_R2 unaligned CPTAC3 cc46aefa-d070-4531-b35b-69fef48f8fd4 6e7453240a7fc5690fa0abd65b52ae08 {"aliquot_tag": "ALQ_8e568d8e", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.transcriptome.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.transcriptome.gdc_realn.bam 12230418460 BAM transcriptome harmonized CPTAC3 8cd4adc9-3231-4f67-8768-0cca6c1122d9 e0b6337153cd1811780fcf6698f77097 {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor"} -C3N-01211.RNA-Seq.transcriptome.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.transcriptome.gdc_realn.bam 9690492748 BAM transcriptome harmonized CPTAC3 d4786834-40e7-4236-a3a2-92925771881f c6cc6764cd649f5d9669ac0437eb3b76 {"aliquot_tag": "ALQ_9f72ed8d", "gdc_sample_type": "Primary Tumor"} -C3N-01211.WGS.N C3N-01211 UCEC WGS blood_normal CPT0076020002 CPT0076020002.WholeGenome.RP-1303.bam 70337765007 BAM aligned CPTAC3 785cea37-b675-46d4-a365-2d89abec88ed 580dfaa4cb03fea28a6a5db16436a440 {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01211.WGS.N.hg38 C3N-01211 UCEC WGS blood_normal CPT0076020002 a5ae9005-f7c0-4291-b288-df8380b29a04_gdc_realn.bam 104504545486 BAM harmonized CPTAC3 9c47ab95-7b62-4528-a9e5-b73bfe99dab3 08b8855c0dcbb7e658538eadbdcaa10e {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01211.WGS.T C3N-01211 UCEC WGS tumor CPT0075900009 CPT0075900009.WholeGenome.RP-1303.bam 56552709015 BAM aligned CPTAC3 1776eceb-fe90-4426-b9f4-1b392ac4c2fd c72b6b378ab7daaf3ef753c595402467 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor"} -C3N-01211.WGS.T.hg38 C3N-01211 UCEC WGS tumor CPT0075900009 d29c7529-d7da-4ee6-b7c3-6af5083003af_gdc_realn.bam 83377139765 BAM harmonized CPTAC3 eb1be1de-2a5d-4ae4-a9bf-e62c34765a69 60c1396bee4b590d024ec30d2af71e31 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor"} -C3N-01211.WXS.N C3N-01211 UCEC WXS blood_normal CPT0076020002 CPT0076020002.WholeExome.RP-1303.bam 26808726014 BAM aligned CPTAC3 bcea7d60-f004-48de-b990-f621f504d140 9a4d53d5f9fc4de286397f0576216b73 {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01211.WXS.N.hg38 C3N-01211 UCEC WXS blood_normal CPT0076020002 a5ae9005-f7c0-4291-b288-df8380b29a04_gdc_realn.bam 36601792011 BAM harmonized CPTAC3 f275ea09-8877-4159-bdee-d8781d22e740 053e61867b0554dd7e6e4fbe1a19b2cf {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01211.WXS.T C3N-01211 UCEC WXS tumor CPT0075900009 CPT0075900009.WholeExome.RP-1303.bam 34143045947 BAM aligned CPTAC3 328fa8fc-696f-4d47-828f-7cf2cd34df9e f53be1b3e89204e6542be300e937b133 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor"} -C3N-01211.WXS.T.hg38 C3N-01211 UCEC WXS tumor CPT0075900009 d29c7529-d7da-4ee6-b7c3-6af5083003af_gdc_realn.bam 46717493322 BAM harmonized CPTAC3 37591282-8e97-4e53-82b4-13eca58214b8 6e86e47b1d4a8ebeaade6ebd40890b5a {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor"} -C3N-01212.ANN_8f02f8b8.MethArray.Green.T C3N-01212 UCEC Methylation_Array tumor CPT0075380009 202176300111_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a715d355-a961-43a2-b008-9c2bc0cd45a3 076102fb4e1161ced0bbe09d9883df22 {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-01212.ANN_8f02f8b8.MethArray.Red.T C3N-01212 UCEC Methylation_Array tumor CPT0075380009 202176300111_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 fe8404a4-6e0c-4506-8f7a-ba7e8df7494e 824438b87cb96dfdc440f8590c3540ab {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-01212.ANN_8f02f8b8.WGS.T C3N-01212 UCEC WGS tumor CPT0075380009 CPT0075380009.WholeGenome.RP-1303.bam 69308469108 BAM aligned CPTAC3 6dd3d8c6-5562-4319-8c95-1c73871961e8 dd8d6e81a28d2902e80709b4e82e62ac {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-01212.ANN_8f02f8b8.WGS.T.hg38 C3N-01212 UCEC WGS tumor CPT0075380009 26e50c35-a756-496a-a377-639add0619ee_gdc_realn.bam 103288384141 BAM harmonized CPTAC3 aaddc8fa-2b31-41ff-8cbe-468c88441734 235b55651eab869a64c0cfaf70332c77 {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-01212.ANN_8f02f8b8.WXS.T C3N-01212 UCEC WXS tumor CPT0075380009 CPT0075380009.WholeExome.RP-1303.bam 27612818064 BAM aligned CPTAC3 b9c5038e-63ba-4d53-8634-720518abd60b e2c619f3f1dc43ec7d87aa9b65f9c753 {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-01212.ANN_8f02f8b8.WXS.T.hg38 C3N-01212 UCEC WXS tumor CPT0075380009 26e50c35-a756-496a-a377-639add0619ee_gdc_realn.bam 38297079719 BAM harmonized CPTAC3 9f929c14-586e-40d7-842c-7fcd83434081 e9cd1f247877cb213c804e2a34d4650c {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-01212.ANN_c025fc89.WGS.N C3N-01212 UCEC WGS blood_normal CPT0075440002 CPT0075440002.WholeGenome.RP-1303.bam 65852195825 BAM aligned CPTAC3 f94f0c39-afc8-44c9-b319-3b81d96c3100 0cb251d3fba8d7fed71d9b20c31ac67a {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-01212.ANN_c025fc89.WGS.N.hg38 C3N-01212 UCEC WGS blood_normal CPT0075440002 de27373b-d06d-4246-bfbd-1fb88cc0f8fd_gdc_realn.bam 98497925335 BAM harmonized CPTAC3 4bc8e960-760d-4cf1-b6b3-b52374645e4f b951f08d59b9aba9c90b64590d030344 {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-01212.ANN_c025fc89.WXS.N C3N-01212 UCEC WXS blood_normal CPT0075440002 CPT0075440002.WholeExome.RP-1303.bam 35903328030 BAM aligned CPTAC3 64fc0220-163a-4cfe-b176-8a23a2bd8880 702c181994420b5f211c93ca76800a06 {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-01212.ANN_c025fc89.WXS.N.hg38 C3N-01212 UCEC WXS blood_normal CPT0075440002 de27373b-d06d-4246-bfbd-1fb88cc0f8fd_gdc_realn.bam 48337338396 BAM harmonized CPTAC3 09d74eea-1860-4270-85dc-ce5bebbf6577 36eede3c7048b55b0859d19e84740e68 {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-01212.miRNA-Seq.S36_L007_R1.T C3N-01212 UCEC miRNA-Seq tumor CPT0075380006 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L007_R1_001.unaln.bam 203254036 BAM S36_L007_R1 unaligned CPTAC3 78e018e7-01e5-451c-a99a-625b7c4aacbc d157102136863e1a2db5991724861c5b {"aliquot_tag": "ALQ_1fbde529", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01212.miRNA-Seq.T.hg38 C3N-01212 UCEC miRNA-Seq tumor CPT0075380006 cf9259fc-ea3c-459c-a78a-057177b629a3_mirnaseq_gdc_realn.bam 228094544 BAM harmonized CPTAC3 6fecbc3b-f9f5-498d-996d-a79400ad92b8 88eff3c5cfda2dc16cc4bca12750582f {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.chimeric.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.chimeric.gdc_realn.bam 437341720 BAM chimeric harmonized CPTAC3 58287dc5-4ad5-4397-8711-ac5346c816fd d663a9cd4b0d1a6b751060a03eba3855 {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.chimeric.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.chimeric.gdc_realn.bam 278954346 BAM chimeric harmonized CPTAC3 020b2707-0b7e-4a27-a758-15b8a49807d3 7371d24017e18938be1e48bb5dd1469d {"aliquot_tag": "ALQ_d66c5893", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.genomic.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.genomic.gdc_realn.bam 8518631995 BAM genomic harmonized CPTAC3 c741e030-c63f-4e05-ac8f-d5a14dc9ce3a b92d4d78c193322471f6f255a5dbd9a7 {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.genomic.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.genomic.gdc_realn.bam 14761576322 BAM genomic harmonized CPTAC3 4e4a4770-db12-43b7-9f0a-3705dc962164 4f89ddc193d515c52a5c4d5f37f1a22c {"aliquot_tag": "ALQ_d66c5893", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.S47_R1.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R1_001.fastq.gz 9187105552 FASTQ S47_R1 unaligned CPTAC3 afd732e5-edb1-4d55-8a0e-ae7ad9be868b ab76b217c77c6dd17d1f3268e0402e8a {"aliquot_tag": "ALQ_d66c5893", "sample": "S47", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.S47_R2.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R2_001.fastq.gz 9636009516 FASTQ S47_R2 unaligned CPTAC3 a24c88f8-e3d9-48c7-8db8-bca6d591bade edc6079edf83dc0c2bf851b42ca06060 {"aliquot_tag": "ALQ_d66c5893", "sample": "S47", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.S5_L008_R1.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R1_001.fastq.gz 4185056852 FASTQ S5_L008_R1 unaligned CPTAC3 77cb79fc-c379-49ee-a61a-861b047a8d63 c813117f6af232a9c6072c44a60b7f5b {"aliquot_tag": "ALQ_1fbde529", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.S5_L008_R2.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R2_001.fastq.gz 4542196085 FASTQ S5_L008_R2 unaligned CPTAC3 70834e25-c655-4715-a7f8-57741576d457 ce47c2da72922be2558c3478339c4f08 {"aliquot_tag": "ALQ_1fbde529", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.transcriptome.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.transcriptome.gdc_realn.bam 12181868455 BAM transcriptome harmonized CPTAC3 e7abcf1f-b30f-4010-a76e-cfabfdee5afe e7dd707c19cb4295a8026ffa2ffe5261 {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor"} -C3N-01212.RNA-Seq.transcriptome.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.transcriptome.gdc_realn.bam 9819944242 BAM transcriptome harmonized CPTAC3 64f15f47-cc41-49cc-abf3-1f79bedabc2b 197d8a08786fb5a84369aae3bb44e702 {"aliquot_tag": "ALQ_d66c5893", "gdc_sample_type": "Primary Tumor"} -C3N-01213.MethArray.Green.T C3N-01213 CCRCC Methylation_Array tumor CPT0075720009 202178770111_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c2235d2d-3d39-4258-a055-5fd34bcc937c 3236dcf3a5eb65554e6ef290a1203103 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor"} -C3N-01213.MethArray.Red.T C3N-01213 CCRCC Methylation_Array tumor CPT0075720009 202178770111_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 2c4e9380-0a45-4dc6-bee6-7268cffa5f12 3ed183816d553fdd668e3311542d1ff5 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor"} -C3N-01213.miRNA-Seq.S37_L007_R1.T C3N-01213 CCRCC miRNA-Seq tumor CPT0075720006 181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L007_R1_001.unaln.bam 251502869 BAM S37_L007_R1 unaligned CPTAC3 a965c462-1a8e-47a5-974b-c369f5d555b3 6e99e065652062a736c6c8b2eff9a990 {"aliquot_tag": "ALQ_ce9cbf9e", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01213.miRNA-Seq.T.hg38 C3N-01213 CCRCC miRNA-Seq tumor CPT0075720006 b8253e74-2592-462e-9e21-5937cc65e798_mirnaseq_gdc_realn.bam 279708359 BAM harmonized CPTAC3 df607b18-689a-4624-9011-00495ed5dd79 cacb2548f8aead72badcd111199c0daa {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor"} -C3N-01213.RNA-Seq.chimeric.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.chimeric.gdc_realn.bam 67007115 BAM chimeric harmonized CPTAC3 4b9ca860-943c-45f8-a363-29db469ffcde 6c75a5399c82eaaed18bd08169d8b622 {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor"} -C3N-01213.RNA-Seq.genomic.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.genomic.gdc_realn.bam 7506941801 BAM genomic harmonized CPTAC3 d13ec729-6132-407b-924d-2ff0f68fe1ac 5cc3be7fbb0264aa9e9ba307946497d5 {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor"} -C3N-01213.RNA-Seq.S6_L008_R1.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R1_001.fastq.gz 3625868213 FASTQ S6_L008_R1 unaligned CPTAC3 605fbbb8-d32e-4b79-affe-28179485475b 59abd3e96c944d55da98901cf6989806 {"aliquot_tag": "ALQ_ce9cbf9e", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01213.RNA-Seq.S6_L008_R2.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R2_001.fastq.gz 3780022459 FASTQ S6_L008_R2 unaligned CPTAC3 cc5b3a0c-4ad0-4ec2-abb5-3a6de4cc6e97 c4e14df7ca5f5d3d5477b6c8071092c6 {"aliquot_tag": "ALQ_ce9cbf9e", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01213.RNA-Seq.transcriptome.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.transcriptome.gdc_realn.bam 9183361922 BAM transcriptome harmonized CPTAC3 c591d97a-07cf-47d6-ae40-1461e0c372c2 75a809f2b9eeb82ffa08ae6cddca4620 {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor"} -C3N-01213.WGS.N C3N-01213 CCRCC WGS blood_normal CPT0075800002 CPT0075800002.WholeGenome.RP-1303.bam 59012031674 BAM aligned CPTAC3 4ec096d0-fb1b-4835-8a1c-3199720a791d 8a38b5bd8f8cead98608ff47ac8142c8 {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal"} -C3N-01213.WGS.N.hg38 C3N-01213 CCRCC WGS blood_normal CPT0075800002 fc169817-4564-405b-a1b0-f21511c2d8c8_gdc_realn.bam 88247466707 BAM harmonized CPTAC3 0a61d30d-48e3-419c-8049-4487b3ecc830 d68a52b4f815e012cfcabfbdc163876f {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal"} -C3N-01213.WGS.T C3N-01213 CCRCC WGS tumor CPT0075720009 CPT0075720009.WholeGenome.RP-1303.bam 58037607466 BAM aligned CPTAC3 6c7d563e-a61a-4de1-afbd-dad1e0222a47 6bec191548863a5b6421db7320af015e {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor"} -C3N-01213.WGS.T.hg38 C3N-01213 CCRCC WGS tumor CPT0075720009 3adc61ac-213f-4512-967d-308832c5145d_gdc_realn.bam 86652764486 BAM harmonized CPTAC3 f68585fa-5b00-44e3-9025-ff36eff59590 7b94845e61bc329c713f53776c8561fd {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor"} -C3N-01213.WXS.N C3N-01213 CCRCC WXS blood_normal CPT0075800002 CPT0075800002.WholeExome.RP-1303.bam 28347069100 BAM aligned CPTAC3 a2649126-2370-40cf-816e-3de73b567a56 3ba049a88aa88ba7521a87366c1e4faa {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal"} -C3N-01213.WXS.N.hg38 C3N-01213 CCRCC WXS blood_normal CPT0075800002 fc169817-4564-405b-a1b0-f21511c2d8c8_gdc_realn.bam 38078650308 BAM harmonized CPTAC3 aeef0533-1970-4818-89c6-fc1d3dfc884e be81cc362706c104f1239a7dcb779974 {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal"} -C3N-01213.WXS.T C3N-01213 CCRCC WXS tumor CPT0075720009 CPT0075720009.WholeExome.RP-1303.bam 36555012007 BAM aligned CPTAC3 7d8ee55b-371d-4a2e-a27b-6cb476ec236e 5b54f4db462c583b0f931aeb15fedd65 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor"} -C3N-01213.WXS.T.hg38 C3N-01213 CCRCC WXS tumor CPT0075720009 3adc61ac-213f-4512-967d-308832c5145d_gdc_realn.bam 50398120362 BAM harmonized CPTAC3 381a5802-b62b-44fe-bce1-177c69f293fe 51855b35770d3263896259b0c18a1da6 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_150fda74.miRNA-Seq.S21_L002_R1.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075540016 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L002_R1_001.unaln.bam 284557553 BAM S21_L002_R1 unaligned CPTAC3 67bc7004-b4f9-4db3-b650-051bee2ea139 9d0f34517587dc826275db1d06b56d51 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_150fda74.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075540016 94ba8a1a-7c34-4f6f-afdc-d7a439375533_mirnaseq_gdc_realn.bam 307401928 BAM harmonized CPTAC3 b6adf665-858f-4c52-ba74-8df7c307a417 7a2250a0d41f2274df796eb84439aa23 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_150fda74.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.chimeric.gdc_realn.bam 30339994 BAM chimeric harmonized CPTAC3 636a56a0-2a42-410a-be88-0e55fb10b315 52840b5cff88d89ec8f9b5adcf18af91 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_150fda74.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.genomic.gdc_realn.bam 7258412959 BAM genomic harmonized CPTAC3 fadb0dbe-05ae-4eae-b7c3-1602cdaad104 7392ab99a698892ae61a1ab98b76934f {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_150fda74.RNA-Seq.S22_L006_R1.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R1_001.fastq.gz 3396025531 FASTQ S22_L006_R1 unaligned CPTAC3 29c903b5-dfa7-4a7a-b93f-496886871939 4d0c22aed508fb8faa0c895dcd37279b {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_150fda74.RNA-Seq.S22_L006_R2.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R2_001.fastq.gz 3838234476 FASTQ S22_L006_R2 unaligned CPTAC3 35d9563c-26b2-4e51-b02a-8632bab707df 970db3ec391bfde1c45f5b38cf5d9866 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_150fda74.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.transcriptome.gdc_realn.bam 9994353333 BAM transcriptome harmonized CPTAC3 4ab46630-895c-49c2-a8b3-9124d70de5ba 6ab12870348df35767216f797fdf567c {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_2f0237dd.MethArray.Green.T C3N-01214 CCRCC Methylation_Array tumor CPT0075550012 204367400148_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fdfb61c4-8b69-45dc-86e5-434cbd9e17b5 2064aaca384d999dfc83d364c02ee5c2 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_2f0237dd.MethArray.Red.T C3N-01214 CCRCC Methylation_Array tumor CPT0075550012 204367400148_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 7698c430-0194-422f-a7c7-6001224bb939 6eb33908d8c1cc6c52b0c3123dcbf076 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_2f0237dd.WGS.T C3N-01214 CCRCC WGS tumor CPT0075550012 CPT0075550012.WholeGenome.RP-2158.bam 30428838219 BAM aligned CPTAC3 dd8c8282-767b-4e55-81d5-bc0bbab5b0bf bf3326e3b6950ab9bbfe9734b7ffca24 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_2f0237dd.WGS.T.hg38 C3N-01214 CCRCC WGS tumor CPT0075550012 a558ec6d-c1bb-4c9f-ba16-9522c7292919_wgs_gdc_realn.bam 90627742417 BAM harmonized CPTAC3 edb61d5a-0e89-4da6-a2e9-0bb8687b6b9b ea1f133c8e70e96584db7140040c7a86 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_2f0237dd.WXS.T C3N-01214 CCRCC WXS tumor CPT0075550012 CPT0075550012.WholeExome.RP-1303.bam 21271076261 BAM aligned CPTAC3 565982d7-fe6f-438f-840d-3802f993bad6 20557f6215cc2a932d480769422e68b2 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_2f0237dd.WXS.T.hg38 C3N-01214 CCRCC WXS tumor CPT0075550012 a558ec6d-c1bb-4c9f-ba16-9522c7292919_wxs_gdc_realn.bam 29395664104 BAM harmonized CPTAC3 12f326a0-673a-4e5f-9649-464d48195507 65d88cb554a50b12b6e2266265e4b6fe {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_a87d933f.miRNA-Seq.S19_L002_R1.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075550005 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L002_R1_001.unaln.bam 249654007 BAM S19_L002_R1 unaligned CPTAC3 690d0423-5d37-4f9f-98da-78579cb2bcd5 2537a79f6106e2edb52ca6127c0e4f01 {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_a87d933f.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075550005 c294705a-234f-4937-ad7a-8321bb424370_mirnaseq_gdc_realn.bam 282699691 BAM harmonized CPTAC3 db4c4e68-c447-4761-985b-31a276d2bbe9 e158f35fecd7149314db202e02beb8fe {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_a87d933f.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.chimeric.gdc_realn.bam 36408352 BAM chimeric harmonized CPTAC3 8df147a4-dafc-400b-88ec-212a16f163e7 46acb755ddad717ba642b49c88e9d76e {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_a87d933f.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.genomic.gdc_realn.bam 8719844840 BAM genomic harmonized CPTAC3 e0fe29b8-796c-4b71-835c-6b0acb1cd12b c9c9af2066a63a01e07ef9652c098a7d {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_a87d933f.RNA-Seq.S24_L006_R1.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R1_001.fastq.gz 4076990725 FASTQ S24_L006_R1 unaligned CPTAC3 a54ec209-3dee-4648-8faf-0e4c910e63d4 260813837d210e7fc3ea253d76843a7e {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_a87d933f.RNA-Seq.S24_L006_R2.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R2_001.fastq.gz 4730544227 FASTQ S24_L006_R2 unaligned CPTAC3 97999ddd-c398-400d-abf8-28fc172880d8 bb7d641bd93711db1b2894e3bbcda58d {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01214.DUP_a87d933f.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.transcriptome.gdc_realn.bam 11983536796 BAM transcriptome harmonized CPTAC3 f094d44a-9854-4b99-b353-1ac54d15e901 11d8c4edb80fc2d82163afe5c8e8c1ca {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01214.MethArray.Green.A C3N-01214 CCRCC Methylation_Array tissue_normal CPT0075570009 204930630107_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 ac735eb3-844a-4c84-a88d-67e0c30aca17 68cd02b41780c4890ddfbda909e2594a {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.MethArray.Green.T C3N-01214 CCRCC Methylation_Array tumor CPT0075560006 202176290116_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b3985b9b-5848-4086-b34c-7b106644fa91 d9574e03c1433149f5c7cc55554002b8 {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor"} -C3N-01214.MethArray.Red.A C3N-01214 CCRCC Methylation_Array tissue_normal CPT0075570009 204930630107_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 70a5b697-0157-4736-8fa1-b5bc3427ce23 d4d40fbc28b91636afe203c5e991e2f9 {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.MethArray.Red.T C3N-01214 CCRCC Methylation_Array tumor CPT0075560006 202176290116_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 772d978c-ba58-4439-88b5-4b9a5d9260e0 e44cead620d5cac88b0ce2ad24076607 {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor"} -C3N-01214.miRNA-Seq.A.hg38 C3N-01214 CCRCC miRNA-Seq tissue_normal CPT0075570006 8220b089-90b2-4d27-841a-f7b5c5fb6c47_mirnaseq_gdc_realn.bam 199575641 BAM harmonized CPTAC3 0460d35d-e5aa-4a23-aeff-fc5e0e15fb2b 888df6798770efe1b8de3f8ee31999a6 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.miRNA-Seq.S16_L003_R1.A C3N-01214 CCRCC miRNA-Seq tissue_normal CPT0075570006 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L003_R1_001.unaln.bam 178579515 BAM S16_L003_R1 unaligned CPTAC3 a692a10f-6e9a-4c1a-a5a9-0257c9d78ba5 e8a76a9fab5cfad0822f7c19ebcba99e {"aliquot_tag": "ALQ_4bb491e5", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.miRNA-Seq.S4_L006_R1.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075560009 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L006_R1_001.unaln.bam 225107791 BAM S4_L006_R1 unaligned CPTAC3 15352afb-c843-4d81-b825-61d7dee999b3 507b41777bbb9facfc6b254fe46f7fd0 {"aliquot_tag": "ALQ_e66ba5c4", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01214.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075560009 056f614f-96da-4f09-9bca-79a215669f68_mirnaseq_gdc_realn.bam 251652815 BAM harmonized CPTAC3 ce5dac62-bae6-4013-bcde-dc7ed2009d5b 86ae91cc39d7b329b8a3fbf24d981c26 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor"} -C3N-01214.RNA-Seq.chimeric.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.chimeric.gdc_realn.bam 39368977 BAM chimeric harmonized CPTAC3 6180ca04-ad38-4c95-bdd1-bea8de8c9425 e749eeb9ae7878689affb2e87db202d0 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.chimeric.gdc_realn.bam 44387738 BAM chimeric harmonized CPTAC3 393b1ebd-db36-487f-a77e-4124cb9ecc34 10ff373751da00edf2bb901af67b6044 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor"} -C3N-01214.RNA-Seq.genomic.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.genomic.gdc_realn.bam 6873532336 BAM genomic harmonized CPTAC3 3cec932c-c9d6-4c94-9578-7aee3bcef723 30095e8fa70204b36a0f9274cfb725c1 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.genomic.gdc_realn.bam 10067897434 BAM genomic harmonized CPTAC3 e6f0603d-967c-409c-bab2-7480b7a029fc 9ea87e8d5c69443be9acfe8483907a38 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor"} -C3N-01214.RNA-Seq.S10_L003_R1.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 3727522006 FASTQ S10_L003_R1 unaligned CPTAC3 3239d526-b422-40a6-9101-0ecaa0d593e3 2ad812bfd0caeefb414848409a542c0e {"aliquot_tag": "ALQ_4bb491e5", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.RNA-Seq.S10_L003_R2.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 3614155260 FASTQ S10_L003_R2 unaligned CPTAC3 10bd76f6-3520-42ca-ba2c-f51ea8fde07d 766b21e07836d46f4ee05bbf8b217317 {"aliquot_tag": "ALQ_4bb491e5", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.RNA-Seq.S4_L001_R1.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3991034378 FASTQ S4_L001_R1 unaligned CPTAC3 4a1f3026-ed39-4b21-82e4-9ba14ccbee40 a688d2376b17c21b7a78e1b203611aa5 {"aliquot_tag": "ALQ_e66ba5c4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01214.RNA-Seq.S4_L001_R2.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4249427390 FASTQ S4_L001_R2 unaligned CPTAC3 0714c54f-a096-4e96-ac18-54d9703396bf 01ca764e78347e28c275b81f70a611b9 {"aliquot_tag": "ALQ_e66ba5c4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01214.RNA-Seq.transcriptome.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.transcriptome.gdc_realn.bam 8287127496 BAM transcriptome harmonized CPTAC3 2ec4679f-9f91-4874-a125-e349974db60d ad848240a823189659417962f6c7c741 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.transcriptome.gdc_realn.bam 9755163097 BAM transcriptome harmonized CPTAC3 a50b5c53-23a2-45cd-b5da-5be3807facb0 6e4ab9b8b3280a7d0ef2fd3a7f3c28d8 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor"} -C3N-01214.WGS.A C3N-01214 CCRCC WGS tissue_normal CPT0075570009 CPT0075570009.WholeGenome.RP-1303.bam 59618084354 BAM aligned CPTAC3 76693a7a-af8d-4163-bb3d-19698dfcd916 27a4a4b042f7afc3c07f1e6175660eec {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.WGS.A.hg38 C3N-01214 CCRCC WGS tissue_normal CPT0075570009 1a4c6633-0caf-47e3-a9e5-287c2864651d_wgs_gdc_realn.bam 87908498248 BAM harmonized CPTAC3 13854138-ba54-4b41-b4fc-8fb5dbae60cf 0ec77796333942e0f97c542d17f77802 {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.WGS.N C3N-01214 CCRCC WGS blood_normal CPT0075620002 CPT0075620002.WholeGenome.RP-1303.bam 76648223970 BAM aligned CPTAC3 942bf752-0711-4632-8855-bbe625de13c3 3376690f5cf653b1fb517a205766f55a {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal"} -C3N-01214.WGS.N.hg38 C3N-01214 CCRCC WGS blood_normal CPT0075620002 68ccdeb9-9c90-4895-b97d-80761d49f19c_gdc_realn.bam 114493148754 BAM harmonized CPTAC3 4d5d9fcf-8968-4f9b-a1ab-45929de98a27 decdec2b6cc395252645e1b98ca95c70 {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal"} -C3N-01214.WGS.T C3N-01214 CCRCC WGS tumor CPT0075560006 CPT0075560006.WholeGenome.RP-1303.bam 84252921892 BAM aligned CPTAC3 8c93f15e-0245-4851-8b6f-9772d572d88d e699166702ff5f1b30ba50571449cd07 {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor"} -C3N-01214.WGS.T.hg38 C3N-01214 CCRCC WGS tumor CPT0075560006 cae3270e-4e3e-4cc1-9dee-5d2de40e6e63_gdc_realn.bam 126632968063 BAM harmonized CPTAC3 0d1f036b-6db6-4f5c-b6b6-be16dbe8c972 5c10f019e82bdb73caaaa60ef4c64ebd {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor"} -C3N-01214.WXS.A C3N-01214 CCRCC WXS tissue_normal CPT0075570009 CPT0075570009.WholeExome.RP-1303.bam 29098090222 BAM aligned CPTAC3 c6dd2dd7-ab36-462d-a142-09b77b04c110 544414c5dc3e70749130961e9dbdb4fb {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.WXS.A.hg38 C3N-01214 CCRCC WXS tissue_normal CPT0075570009 1a4c6633-0caf-47e3-a9e5-287c2864651d_wxs_gdc_realn.bam 39352991909 BAM harmonized CPTAC3 34109d5e-140d-4fcb-ad68-55bff61ba867 1773a5ffb99ee5a5a77b9d8212222a99 {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01214.WXS.N C3N-01214 CCRCC WXS blood_normal CPT0075620002 CPT0075620002.WholeExome.RP-1303.bam 29248264123 BAM aligned CPTAC3 8a601647-5ccc-4af5-ad91-c65ef5d5c339 2ed2ab3ae18c0440f1229544aa620df3 {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal"} -C3N-01214.WXS.N.hg38 C3N-01214 CCRCC WXS blood_normal CPT0075620002 68ccdeb9-9c90-4895-b97d-80761d49f19c_gdc_realn.bam 39621420718 BAM harmonized CPTAC3 eabb7049-e2f9-44af-90be-01d5c496ccc6 a9d0230d44200481df200820be235730 {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal"} -C3N-01214.WXS.T C3N-01214 CCRCC WXS tumor CPT0075560006 CPT0075560006.WholeExome.RP-1303.bam 38764534502 BAM aligned CPTAC3 d3d551a3-11a6-4584-9e6c-03bfc1468f25 4def0c7a414aa6618de19e768dc36ffa {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor"} -C3N-01214.WXS.T.hg38 C3N-01214 CCRCC WXS tumor CPT0075560006 cae3270e-4e3e-4cc1-9dee-5d2de40e6e63_gdc_realn.bam 53781194474 BAM harmonized CPTAC3 c6af3880-b6f9-4a6d-b473-bd82e256ae4f 5817550e230ff3da3dbe2a8c1bff1dee {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor"} -C3N-01217.MethArray.Green.T C3N-01217 UCEC Methylation_Array tumor CPT0076500006 202163550072_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3fd361c0-f432-4977-a957-f3b73a7ec5bf 5450482bf01b2e85e50c710380f35ab0 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor"} -C3N-01217.MethArray.Red.T C3N-01217 UCEC Methylation_Array tumor CPT0076500006 202163550072_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 a3c27a72-713d-48f4-8534-be1d4e8be73d 077f2118db4684492a4394e26925d5c6 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor"} -C3N-01217.miRNA-Seq.S1_L006_R1.T C3N-01217 UCEC miRNA-Seq tumor CPT0076500009 181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L006_R1_001.unaln.bam 195169636 BAM S1_L006_R1 unaligned CPTAC3 e0cbb9ad-fb3c-433b-9169-d0acd89433fb 8e622aef8ab391370ea38970ab5e7aaa {"aliquot_tag": "ALQ_58c34af9", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01217.miRNA-Seq.T.hg38 C3N-01217 UCEC miRNA-Seq tumor CPT0076500009 a6ae24ae-db56-45c8-a90b-a755eb50e99c_mirnaseq_gdc_realn.bam 220247415 BAM harmonized CPTAC3 687aebe0-bf35-4c1b-9400-2295d1e9bd04 c94977bff48f9437ba01cee32ef71f36 {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.chimeric.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.chimeric.gdc_realn.bam 65658426 BAM chimeric harmonized CPTAC3 6d4dd08d-8b98-44e6-a370-470bc7de04da ee85454e451590596a3c5adfbdc7073d {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.chimeric.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.chimeric.gdc_realn.bam 120374506 BAM chimeric harmonized CPTAC3 723eaea1-7a5c-482a-8bd0-1e4c60b991f5 9b3a830d235f8198e2aa554eb975ca1b {"aliquot_tag": "ALQ_a398640b", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.genomic.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.genomic.gdc_realn.bam 9019200004 BAM genomic harmonized CPTAC3 0e10f8c0-0a6c-4329-acdc-63cd7e50f1d5 64ee042fba7aa2eaee7e31abe27991c0 {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.genomic.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.genomic.gdc_realn.bam 8928089303 BAM genomic harmonized CPTAC3 12792da2-b4dc-4b37-98f1-e7b5614f22f7 8bf008c2649a33fff09eb84d700dc533 {"aliquot_tag": "ALQ_a398640b", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.S22_L006_R1.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4249514878 FASTQ S22_L006_R1 unaligned CPTAC3 e60a5351-d5bd-4e4c-b9d2-64fcdca999b1 0b81b9fb58f42a4195eb3fa3c52513f6 {"aliquot_tag": "ALQ_58c34af9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.S22_L006_R2.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4641396122 FASTQ S22_L006_R2 unaligned CPTAC3 03100748-7dc8-4f11-a46f-9153d3769556 5a512a3a052cc8c74fbd51e7966f8d87 {"aliquot_tag": "ALQ_58c34af9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.S23_R1.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R1_001.fastq.gz 4635119896 FASTQ S23_R1 unaligned CPTAC3 9be9f41f-f36b-4e64-ba7f-5bfcb46c5acf 82016f40a6af85be40ae7aa95506f568 {"aliquot_tag": "ALQ_a398640b", "sample": "S23", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.S23_R2.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R2_001.fastq.gz 4810551716 FASTQ S23_R2 unaligned CPTAC3 fb2d686d-02db-40c0-a5f7-3d40c2c583db 7f37c396378fbc049bc1595d5b887b94 {"aliquot_tag": "ALQ_a398640b", "sample": "S23", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.transcriptome.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.transcriptome.gdc_realn.bam 10166859106 BAM transcriptome harmonized CPTAC3 77fc49f3-8a9e-433b-ad4c-541fcb01356e 9d4ae872385c680422fdd5f609e186fe {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor"} -C3N-01217.RNA-Seq.transcriptome.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.transcriptome.gdc_realn.bam 4656619976 BAM transcriptome harmonized CPTAC3 5f4348d3-1c02-4f98-af28-afefda52d031 5223eeed915fbc3feed7a5a9d4000322 {"aliquot_tag": "ALQ_a398640b", "gdc_sample_type": "Primary Tumor"} -C3N-01217.WGS.N C3N-01217 UCEC WGS blood_normal CPT0076580002 CPT0076580002.WholeGenome.RP-1303.bam 70065926888 BAM aligned CPTAC3 651f0870-292f-4f49-9774-cf1589860087 78af5824dae265f3aedc3c1917ccc7d0 {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01217.WGS.N.hg38 C3N-01217 UCEC WGS blood_normal CPT0076580002 b198fef8-363e-4231-97b0-2b31b0f928fa_gdc_realn.bam 106812640997 BAM harmonized CPTAC3 1a91f81d-f6e4-4ce3-9d38-0ab56f84767b 0d40daafad8439fd37ad72b871ac4821 {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01217.WGS.T C3N-01217 UCEC WGS tumor CPT0076500006 CPT0076500006.WholeGenome.RP-1303.bam 65512228992 BAM aligned CPTAC3 27552a72-0d2c-4307-aefc-1cd193436953 bfb646c4720be88e51408ec4abc1b85e {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor"} -C3N-01217.WGS.T.hg38 C3N-01217 UCEC WGS tumor CPT0076500006 73ad916a-e94f-45f8-9ca7-3de307f3a46c_gdc_realn.bam 98535558446 BAM harmonized CPTAC3 9a74ea27-cda9-4e07-a710-db1b432ecf4e 8edac89d6502e741fa1268b748c00694 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor"} -C3N-01217.WXS.N C3N-01217 UCEC WXS blood_normal CPT0076580002 CPT0076580002.WholeExome.RP-1303.bam 29399626663 BAM aligned CPTAC3 d2c55ed8-a5af-40b4-87f2-769084ef8832 357adb5ec23fd64961dda375f8f8be8b {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01217.WXS.N.hg38 C3N-01217 UCEC WXS blood_normal CPT0076580002 b198fef8-363e-4231-97b0-2b31b0f928fa_gdc_realn.bam 39654548665 BAM harmonized CPTAC3 c4fd71e5-acf9-4b52-a1bb-e1f757042066 6ed57c027ec684fea912be4b84556019 {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01217.WXS.T C3N-01217 UCEC WXS tumor CPT0076500006 CPT0076500006.WholeExome.RP-1303.bam 28160122474 BAM aligned CPTAC3 a87a69f6-fc98-4521-935d-1f922bfd72af cc1bb45a444b6a704e6f4c766e50ed08 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor"} -C3N-01217.WXS.T.hg38 C3N-01217 UCEC WXS tumor CPT0076500006 73ad916a-e94f-45f8-9ca7-3de307f3a46c_gdc_realn.bam 38771060949 BAM harmonized CPTAC3 c549bd7c-0935-4276-a507-7b7fc9b54a60 f5c5ef2b923a25e8d6634a867a871f81 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor"} -C3N-01219.MethArray.Green.T C3N-01219 UCEC Methylation_Array tumor CPT0076160006 202178770083_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 20df07ad-7a6a-4dcc-aef0-f3a03a652e0a 6d2e6efd39e76c59264d8412a0eb904d {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor"} -C3N-01219.MethArray.Red.T C3N-01219 UCEC Methylation_Array tumor CPT0076160006 202178770083_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 d5e7bd86-a534-4748-856a-795d2cc2c57c 47a64e451bd76f9246a820bff9f5476c {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor"} -C3N-01219.miRNA-Seq.S2_L005_R1.T C3N-01219 UCEC miRNA-Seq tumor CPT0076160009 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L005_R1_001.unaln.bam 253861019 BAM S2_L005_R1 unaligned CPTAC3 195a1013-613f-465d-a1bc-86e2bae3900b c473ede6c8347a2210fd12261cf3997a {"aliquot_tag": "ALQ_4c12fd4f", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01219.miRNA-Seq.T.hg38 C3N-01219 UCEC miRNA-Seq tumor CPT0076160009 15ca3a99-1a54-49be-80ec-06b9d7ffed47_mirnaseq_gdc_realn.bam 280432556 BAM harmonized CPTAC3 9311e783-374f-48be-a303-eb1c80bbd8ff 60c7797a7c649161e42547c65822373e {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.chimeric.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.chimeric.gdc_realn.bam 52360346 BAM chimeric harmonized CPTAC3 2f2ae3e8-b69a-4920-8f25-8091d6bbe148 7711bd763de3617aae5552376fb03664 {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.chimeric.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.chimeric.gdc_realn.bam 182580929 BAM chimeric harmonized CPTAC3 556bdec9-2c65-402c-a788-ffd86001f5da 4cda510e38968cdf425fe85b9fc3eed3 {"aliquot_tag": "ALQ_4b1df273", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.genomic.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.genomic.gdc_realn.bam 9143110736 BAM genomic harmonized CPTAC3 ce386d5a-e6b1-4f5b-858b-7c59dd627851 2d3fd611f57e547b82412203222a1a9b {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.genomic.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.genomic.gdc_realn.bam 9964225183 BAM genomic harmonized CPTAC3 96901bf6-cba6-41ad-a569-158c00c8f2bc 9b67157ca0f1ab36eec0518faaced4ab {"aliquot_tag": "ALQ_4b1df273", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.S23_L006_R1.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R1_001.fastq.gz 3838496765 FASTQ S23_L006_R1 unaligned CPTAC3 e20212d2-8826-470e-8ea9-fd482194e637 1f509d18ccd2717c51095d99ac0c7ab2 {"aliquot_tag": "ALQ_4c12fd4f", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.S23_L006_R2.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4181958224 FASTQ S23_L006_R2 unaligned CPTAC3 4411b385-dfc9-42a7-b200-a2ef23950c1e ade1a0d6b77eef02fd86fa00ff69f345 {"aliquot_tag": "ALQ_4c12fd4f", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.S51_R1.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R1_001.fastq.gz 6172623004 FASTQ S51_R1 unaligned CPTAC3 d4e51395-c442-420b-aa6f-d4285f83629b 171ae05520b7d727a9000d5ae6caea52 {"aliquot_tag": "ALQ_4b1df273", "sample": "S51", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.S51_R2.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R2_001.fastq.gz 6441627708 FASTQ S51_R2 unaligned CPTAC3 5ddc4cf7-51f3-4c6d-815d-5fa0b7e8135b 01be7b610741685fcfa5ec8223753db9 {"aliquot_tag": "ALQ_4b1df273", "sample": "S51", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.transcriptome.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.transcriptome.gdc_realn.bam 8499939236 BAM transcriptome harmonized CPTAC3 25937390-2979-4ab5-b71c-f9f8ec25c342 5be974951beaab1200be105bad88db9d {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor"} -C3N-01219.RNA-Seq.transcriptome.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.transcriptome.gdc_realn.bam 6071601585 BAM transcriptome harmonized CPTAC3 fd4b583b-e728-46a9-86f3-1294a00230c9 5fd2a01766793944ac2322db70e19db6 {"aliquot_tag": "ALQ_4b1df273", "gdc_sample_type": "Primary Tumor"} -C3N-01219.WGS.N C3N-01219 UCEC WGS blood_normal CPT0076220002 CPT0076220002.WholeGenome.RP-1303.bam 68890986672 BAM aligned CPTAC3 ff01b4dc-a0e5-4ab4-adfd-104a1b16139a 072d43ef4de636c480dea17c2b75fad0 {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01219.WGS.N.hg38 C3N-01219 UCEC WGS blood_normal CPT0076220002 d4c44cff-6bfd-46e0-a542-426345f7afff_gdc_realn.bam 104941785202 BAM harmonized CPTAC3 130cc23b-3c75-406e-b2e3-6c762c8dcfc7 dc8e9ce8d9e3115458493a9ffe2d07df {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01219.WGS.T C3N-01219 UCEC WGS tumor CPT0076160006 CPT0076160006.WholeGenome.RP-1303.bam 63314749909 BAM aligned CPTAC3 d4dbe264-66d3-4ef8-a990-c4c105e2d4e7 af77cc27a08da47d864aa808a5f60c1b {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor"} -C3N-01219.WGS.T.hg38 C3N-01219 UCEC WGS tumor CPT0076160006 14e343cd-1aff-4e8b-8bd8-7c4813ec2405_gdc_realn.bam 95267238417 BAM harmonized CPTAC3 8fc2d44a-4784-476b-83f4-d860c3e7ef4b b6cd06e0deb51b62771e306f8b8c0b5b {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor"} -C3N-01219.WXS.N C3N-01219 UCEC WXS blood_normal CPT0076220002 CPT0076220002.WholeExome.RP-1303.bam 29689961810 BAM aligned CPTAC3 177e63f2-7620-4c1d-8b8d-423880ed4f7a 58508943a35f3eca75944ddd4b40b88b {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01219.WXS.N.hg38 C3N-01219 UCEC WXS blood_normal CPT0076220002 d4c44cff-6bfd-46e0-a542-426345f7afff_gdc_realn.bam 40317131638 BAM harmonized CPTAC3 6b91773f-2a59-4a80-ac8c-f7bd3a92755d 7f4a152f49ebd7dd3bb0a6f4305ae11a {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01219.WXS.T C3N-01219 UCEC WXS tumor CPT0076160006 CPT0076160006.WholeExome.RP-1303.bam 35664978668 BAM aligned CPTAC3 562fe4a5-c4e2-4798-81b0-1f62f64e967a aecbf5654759fde19664de73a72fc195 {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor"} -C3N-01219.WXS.T.hg38 C3N-01219 UCEC WXS tumor CPT0076160006 14e343cd-1aff-4e8b-8bd8-7c4813ec2405_gdc_realn.bam 48731152656 BAM harmonized CPTAC3 8f2fb70a-9111-4662-b07b-937b3880b9f2 89cd893b941ca11ef9c2a2a1a8ffb7de {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_7b1a0f24.miRNA-Seq.S1_L004_R1.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076340009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGAGC_S1_L004_R1_001.unaln.bam 277168649 BAM S1_L004_R1 unaligned CPTAC3 3381f99f-e5d8-4a18-8b18-c3ab6a019635 44402ddeb33833b1fb9011429f480bb9 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_7b1a0f24.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076340009 e20d7b23-ab65-4737-91a5-d2f631dc8bd2_mirnaseq_gdc_realn.bam 302755705 BAM harmonized CPTAC3 e0710ed1-15be-43b2-b3c9-a16667cef543 0cd1c9db4f3a92bc7d75634fa21de45a {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_7b1a0f24.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.chimeric.gdc_realn.bam 184757655 BAM chimeric harmonized CPTAC3 40485767-980a-442e-b56f-f17c223fd43f 0b3c670260a2c33fc293c7b074833ff7 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_7b1a0f24.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.genomic.gdc_realn.bam 7827754877 BAM genomic harmonized CPTAC3 9b5a28ae-42f0-4289-b20d-cbb92b4430d6 4169fb3736ec33d194f33b32b3ae138b {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_7b1a0f24.RNA-Seq.S7_L002_R1.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R1_001.fastq.gz 3636707658 FASTQ S7_L002_R1 unaligned CPTAC3 3e813950-7da9-4dd9-a4a6-fde17a82a0dd a390a574382f44f8f9dd3759bb381a5a {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_7b1a0f24.RNA-Seq.S7_L002_R2.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R2_001.fastq.gz 4290988096 FASTQ S7_L002_R2 unaligned CPTAC3 fa96db8d-5e7b-4a03-96c7-9ee08a3d7179 74ea2a1be4c72bfd36034ac478440e88 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_7b1a0f24.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.transcriptome.gdc_realn.bam 11588006443 BAM transcriptome harmonized CPTAC3 054b59d9-3afa-40ff-a9a5-b3d96a618bfb 7fda625d50afeb991eb0966b117a1959 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_93f0b778.miRNA-Seq.S12_L001_R1.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076320014 200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L001_R1_001.unaln.bam 271185910 BAM S12_L001_R1 unaligned CPTAC3 2dbed1b3-763d-435f-8fb9-917bf13c1a56 94763f7149c7a3fb5f6eea5f3d960cad {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_93f0b778.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076320014 1fe5e835-6ea6-43ef-bc3c-baf6df9ca739_mirnaseq_gdc_realn.bam 291801924 BAM harmonized CPTAC3 e4b5d267-a4f1-45e6-9ef6-b3fbc1b9e06e 8bc2041b037efba2eb5d107b4ee0a0da {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_93f0b778.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.chimeric.gdc_realn.bam 35029284 BAM chimeric harmonized CPTAC3 e2056d2c-67ab-4dd5-9a0e-185d33850a26 83c0e22b9ce547dc6a3bda621cbea9b9 {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_93f0b778.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.genomic.gdc_realn.bam 7402048823 BAM genomic harmonized CPTAC3 f1322c99-6951-45af-89bc-9a2471f3704c 51e652596679aa161365ad9e2a147970 {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_93f0b778.RNA-Seq.S1_L001_R1.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 3407315825 FASTQ S1_L001_R1 unaligned CPTAC3 390a79d2-0957-45b4-af79-059f55e8865a 305d7fa3b6912a2d7105ea81ff787e3c {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_93f0b778.RNA-Seq.S1_L001_R2.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 4201860940 FASTQ S1_L001_R2 unaligned CPTAC3 c9779aff-d269-4ba8-9abf-801cc26e10f7 6903c4e5c31f6edb65a1b17c2957e7cd {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_93f0b778.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.transcriptome.gdc_realn.bam 11057802573 BAM transcriptome harmonized CPTAC3 a535009a-eb3c-4577-bf61-882642ea0006 ed0d8ca36ce97297768c9b35298ec2a1 {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_e39a43f7.MethArray.Green.T C3N-01220 CCRCC Methylation_Array tumor CPT0076320011 204367490043_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6fa99b43-1023-48df-a9fa-68d9c30e306b 023b4f13e38a1c937368bd754ebe9c78 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_e39a43f7.MethArray.Red.T C3N-01220 CCRCC Methylation_Array tumor CPT0076320011 204367490043_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 489dd2a2-90d6-4046-b6f1-93332ad3346e 8e8342010cc7c0e65dcd159b972be692 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_e39a43f7.WGS.T C3N-01220 CCRCC WGS tumor CPT0076320011 CPT0076320011.WholeGenome.RP-2158.bam 20896030011 BAM aligned CPTAC3 21ec5b65-85bc-445d-87f9-74f86751788e baf5771b4890852af98f8d5aa5699912 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_e39a43f7.WGS.T.hg38 C3N-01220 CCRCC WGS tumor CPT0076320011 43ec9bee-5438-4c71-9c45-fad51cabea55_wgs_gdc_realn.bam 59947058257 BAM harmonized CPTAC3 6ed3b44b-5e9a-48b0-8d84-2ca368602eb9 aa4141136499c998db9913e8233e47f8 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_e39a43f7.WXS.T C3N-01220 CCRCC WXS tumor CPT0076320011 CPT0076320011.WholeExome.RP-1303.bam 23915491163 BAM aligned CPTAC3 e4d0b9c6-9286-4577-8ef6-43c7cde1390f 8a15ca5896805df15200e347788e4f35 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_e39a43f7.WXS.T.hg38 C3N-01220 CCRCC WXS tumor CPT0076320011 43ec9bee-5438-4c71-9c45-fad51cabea55_wxs_gdc_realn.bam 33407040203 BAM harmonized CPTAC3 fbb6789e-e42a-4cbb-8f9d-e042ff294a06 b633bc0bbbb22251e14a8760d1a9d69d {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_f5d3e7ed.MethArray.Green.T C3N-01220 CCRCC Methylation_Array tumor CPT0076340012 204372030022_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 bf81ac9a-3226-4c18-851d-6f562839e04d 8d9fba20aa9602e56fe0f7a17d455319 {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_f5d3e7ed.MethArray.Red.T C3N-01220 CCRCC Methylation_Array tumor CPT0076340012 204372030022_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 fd5a752c-40f0-4964-bf45-b640d5144d58 7eefdefd2de33d94756f606e3e710b9e {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_f5d3e7ed.WGS.T C3N-01220 CCRCC WGS tumor CPT0076340012 CPT0076340012.WholeGenome.RP-2158.bam 25333569676 BAM aligned CPTAC3 3a83f057-b7b5-41a9-88e9-74d4bcade7cf a221e3a4114d57931ef51eaa9d1dc259 {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_f5d3e7ed.WGS.T.hg38 C3N-01220 CCRCC WGS tumor CPT0076340012 807221a2-cc6b-48e0-957c-ec6703e0bae7_wgs_gdc_realn.bam 74187766542 BAM harmonized CPTAC3 147ff43d-baba-465e-8018-f8df12a31d91 3eb5b1ab9b11652ff9ef032f4b3004ce {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_f5d3e7ed.WXS.T C3N-01220 CCRCC WXS tumor CPT0076340012 CPT0076340012.WholeExome.RP-1303.bam 21700841457 BAM aligned CPTAC3 9bb82efb-42bc-446c-9008-a767c61e7100 fae87c33835df7cdc8feb1901e570b8e {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.DUP_f5d3e7ed.WXS.T.hg38 C3N-01220 CCRCC WXS tumor CPT0076340012 807221a2-cc6b-48e0-957c-ec6703e0bae7_wxs_gdc_realn.bam 29614724670 BAM harmonized CPTAC3 5e5b5a07-e448-4815-affa-2cfc7651113e 9fb0c243a61e373fe643da3744a9c063 {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01220.MethArray.Green.A C3N-01220 CCRCC Methylation_Array tissue_normal CPT0076350009 204930640064_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c7526124-d65d-4e82-a84b-130a813becc9 97891c9e440ce2a9cd804b9370bc40d0 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.MethArray.Green.T C3N-01220 CCRCC Methylation_Array tumor CPT0076330006 202163550076_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4e214611-0a6e-4805-87c9-15c4cb644bff 841f0c18757e19f2953a03d9f595fa01 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor"} -C3N-01220.MethArray.Red.A C3N-01220 CCRCC Methylation_Array tissue_normal CPT0076350009 204930640064_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 f9d7e4a8-8f5e-4ccb-9030-73b28d9833d2 8fbf886c565f6071a691641c6c58040d {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.MethArray.Red.T C3N-01220 CCRCC Methylation_Array tumor CPT0076330006 202163550076_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 740e9a14-4c09-4d1d-af5a-002b70afd5bf 57bf63247d6fe9fdcac4ed4ce1d54bbd {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor"} -C3N-01220.miRNA-Seq.A.hg38 C3N-01220 CCRCC miRNA-Seq tissue_normal CPT0076350006 51bf5d7e-a9fd-45e0-b91a-52a34369eddb_mirnaseq_gdc_realn.bam 191634163 BAM harmonized CPTAC3 0abd551a-ce61-4731-b44d-5cc7eecd40f6 6e888ff31c334766418597c6fcb85655 {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.miRNA-Seq.S17_L003_R1.A C3N-01220 CCRCC miRNA-Seq tissue_normal CPT0076350006 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 171349465 BAM S17_L003_R1 unaligned CPTAC3 c3359fb0-d474-4009-b3a0-8652a32a06c9 38b03dbd71b193e11a5b873ca8bc1799 {"aliquot_tag": "ALQ_d6c53b05", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.miRNA-Seq.S33_L004_R1.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076330008 181113_UNC31-K00269_0164_AH23NNBBXY_GATCAG_S33_L004_R1_001.unaln.bam 225857428 BAM S33_L004_R1 unaligned CPTAC3 53eecf2b-a829-4e39-b8d0-0aea47593388 8cea17f0db8835dedec3af66a5af7bcc {"aliquot_tag": "ALQ_be3de3a2", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01220.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076330008 fd755eae-52b1-40df-99b9-d822ac89dfb8_mirnaseq_gdc_realn.bam 250786542 BAM harmonized CPTAC3 fe2aa0a8-181c-4151-b4e1-868f7f600da4 c9fa3fbe8db87377f287748eaf387ced {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor"} -C3N-01220.RNA-Seq.chimeric.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.chimeric.gdc_realn.bam 65429902 BAM chimeric harmonized CPTAC3 85bcf5ad-f363-4194-9ebc-44af6a50df0d c494e4dacf8376f371f04fc28f72a245 {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.chimeric.gdc_realn.bam 50792236 BAM chimeric harmonized CPTAC3 3cc8320d-5bd5-41dd-b658-50d754c1b5a5 54f7088dcc9024df6e513a066de74d62 {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor"} -C3N-01220.RNA-Seq.genomic.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.genomic.gdc_realn.bam 9061904295 BAM genomic harmonized CPTAC3 39de6d82-1585-4514-9038-42d88946f1c3 812512d01663ad0084846b8a4a1555f8 {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.genomic.gdc_realn.bam 7249853799 BAM genomic harmonized CPTAC3 21d72bba-6d17-40c5-8be7-c9ae34d954c9 87ea62c7e1c85dd3a1c6e5e7507106e5 {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor"} -C3N-01220.RNA-Seq.S12_L003_R1.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R1_001.fastq.gz 4547071907 FASTQ S12_L003_R1 unaligned CPTAC3 6871b6fe-05b3-4de6-ae72-4ff2312f0383 39efdd2b594511cc0dc6d4d49cae5664 {"aliquot_tag": "ALQ_d6c53b05", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.RNA-Seq.S12_L003_R2.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R2_001.fastq.gz 4928211983 FASTQ S12_L003_R2 unaligned CPTAC3 445899d0-1c6f-41be-aded-b4565954d913 a04667eb2f9ca6ae987aa66b2b324664 {"aliquot_tag": "ALQ_d6c53b05", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.RNA-Seq.S7_L008_R1.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3479993988 FASTQ S7_L008_R1 unaligned CPTAC3 a7721c68-237b-487d-8cff-3c5467cee627 fc23689816af5e309ad558f490e5d9d1 {"aliquot_tag": "ALQ_be3de3a2", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01220.RNA-Seq.S7_L008_R2.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R2_001.fastq.gz 3752516932 FASTQ S7_L008_R2 unaligned CPTAC3 302d01d4-74bd-4971-8955-86e606e3aad3 3c88c225a2f4184e27d4aaed740f047a {"aliquot_tag": "ALQ_be3de3a2", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01220.RNA-Seq.transcriptome.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.transcriptome.gdc_realn.bam 12459867482 BAM transcriptome harmonized CPTAC3 00257c9f-1dd6-4f80-86d0-a8351a9c2c21 32a8476d7067747fb7e3d3810bf9daaf {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.transcriptome.gdc_realn.bam 10744548765 BAM transcriptome harmonized CPTAC3 4e70c764-33c3-44e6-a4cc-77d68ec2ef6e e7a6c11a99d9cc4a1637ba418e064b9e {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor"} -C3N-01220.WGS.A C3N-01220 CCRCC WGS tissue_normal CPT0076350009 CPT0076350009.WholeGenome.RP-1303.bam 54176269584 BAM aligned CPTAC3 d7f45be8-fbd8-4f67-8c56-d1a3705eaf2a 84f6f1d7048e5af4dbc7c145637dd785 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.WGS.A.hg38 C3N-01220 CCRCC WGS tissue_normal CPT0076350009 0dbd842b-51dc-4a2d-8648-b704b7fe871f_wgs_gdc_realn.bam 79472851933 BAM harmonized CPTAC3 d429a149-f6ca-46c9-9e81-ee297bce409a 92ef0664edcb6d82422350f1007f2888 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.WGS.N C3N-01220 CCRCC WGS blood_normal CPT0076400002 CPT0076400002.WholeGenome.RP-1303.bam 60926784017 BAM aligned CPTAC3 7b54ecbb-07d5-4161-9a29-72f0335c3f4f 273453a70a4c73bdf97e4942f08e186c {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01220.WGS.N.hg38 C3N-01220 CCRCC WGS blood_normal CPT0076400002 9d8605f9-6281-4ce5-a4fa-4399e1902769_gdc_realn.bam 91932048950 BAM harmonized CPTAC3 d11e1200-aaa5-4357-9955-8fedcd216fa8 2435ae8801a30ce0cd5ad6f681bb4699 {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01220.WGS.T C3N-01220 CCRCC WGS tumor CPT0076330006 CPT0076330006.WholeGenome.RP-1303.bam 69230827192 BAM aligned CPTAC3 05083b1e-8160-427a-8428-9c7eee0f91b2 b4308d1c893c17346f0d0bb53f823422 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor"} -C3N-01220.WGS.T.hg38 C3N-01220 CCRCC WGS tumor CPT0076330006 5e08ba1d-7269-475b-bda6-e685083916a8_gdc_realn.bam 104474279230 BAM harmonized CPTAC3 8c3f21d9-c6cd-4036-99f9-83273175ca52 26af60183c8967cc02203b3f711f319a {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor"} -C3N-01220.WXS.A C3N-01220 CCRCC WXS tissue_normal CPT0076350009 CPT0076350009.WholeExome.RP-1303.bam 37705204989 BAM aligned CPTAC3 028b4d82-43b9-4fcf-9ba1-d5fa41e0bab5 8f3835bd2979b41a9f3e659ea9fc1ba1 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.WXS.A.hg38 C3N-01220 CCRCC WXS tissue_normal CPT0076350009 0dbd842b-51dc-4a2d-8648-b704b7fe871f_wxs_gdc_realn.bam 50459240515 BAM harmonized CPTAC3 bfee0e0d-5839-425e-b734-eb0e13bfdd3f db684f2ceec6248363770e11834d1730 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01220.WXS.N C3N-01220 CCRCC WXS blood_normal CPT0076400002 CPT0076400002.WholeExome.RP-1303.bam 32561383237 BAM aligned CPTAC3 60f90d9b-f199-4ab6-9f5f-5500b41548fe a70a2a060056e0f57a8453902fa023fa {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01220.WXS.N.hg38 C3N-01220 CCRCC WXS blood_normal CPT0076400002 9d8605f9-6281-4ce5-a4fa-4399e1902769_gdc_realn.bam 43802189710 BAM harmonized CPTAC3 00678e28-01cc-423a-a99b-5b9ea325cf2b 6dd26ea5e9098e54de8dc1629ae74e63 {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01220.WXS.T C3N-01220 CCRCC WXS tumor CPT0076330006 CPT0076330006.WholeExome.RP-1303.bam 31659435663 BAM aligned CPTAC3 451a97b1-9d09-4cd4-ba90-1b0f5b212f24 a67ad144222973ba77d92c326d0786f5 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor"} -C3N-01220.WXS.T.hg38 C3N-01220 CCRCC WXS tumor CPT0076330006 5e08ba1d-7269-475b-bda6-e685083916a8_gdc_realn.bam 44272718325 BAM harmonized CPTAC3 61545e14-8d82-4101-8397-a13fc35295c5 4c32d375320958a8ab92b38ae2f59a44 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_17775369.miRNA-Seq.S3_L004_R1.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077470006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L004_R1_001.unaln.bam 323159596 BAM S3_L004_R1 unaligned CPTAC3 b870a25b-6664-4383-83b2-22602e6e6ba6 8c832c054bf1c6c1f9afb7e2ad58b766 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_17775369.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077470006 b74acaa4-369f-4a1b-847e-a293ceaaa880_mirnaseq_gdc_realn.bam 358343624 BAM harmonized CPTAC3 a8732aef-a18e-4027-af82-72ecd309b025 28483c36ca58dc7f8f3533dc6211792d {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_17775369.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.chimeric.gdc_realn.bam 223401662 BAM chimeric harmonized CPTAC3 320ccd76-7a11-4833-aae9-935b6550fa76 fda7578afbc2318e0ea87a414eb400d4 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_17775369.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.genomic.gdc_realn.bam 8769293593 BAM genomic harmonized CPTAC3 a36e8c9f-ff1f-4757-97cb-a06bdead44d6 04aa3168fd05b233f30bd7043a5f867b {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_17775369.RNA-Seq.S12_L003_R1.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 4232641871 FASTQ S12_L003_R1 unaligned CPTAC3 c497a706-0042-4a1d-8fa7-46e0858543a2 2a07651d2dc0c765acd6392e040d67df {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_17775369.RNA-Seq.S12_L003_R2.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 4931865743 FASTQ S12_L003_R2 unaligned CPTAC3 175b3614-d9fb-4a4f-be79-911094a20cce abefeaf8711774e64dc6fabd6495b450 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_17775369.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.transcriptome.gdc_realn.bam 11292536720 BAM transcriptome harmonized CPTAC3 94157681-63ac-4e2e-a995-1d25b280a683 6433a2bdd21332306d0ba751b7f4f3c9 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_598d929.MethArray.Green.T C3N-01261 CCRCC Methylation_Array tumor CPT0077480009 204367490029_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0b467d26-740e-4b5c-abe6-c651bf2afc21 27bb8b7e79be444be6039ddd74156215 {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_598d929.MethArray.Red.T C3N-01261 CCRCC Methylation_Array tumor CPT0077480009 204367490029_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 465642a9-6f97-42f3-b00e-7d76d4d795f9 3cdec7bc7b24164409be9889e2962f4e {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_598d929.WGS.T C3N-01261 CCRCC WGS tumor CPT0077480009 CPT0077480009.WholeGenome.RP-2158.bam 25731865155 BAM aligned CPTAC3 ed7207bd-ef5b-4b60-afb7-4052788bac49 f49fad5d3c5531fa2edd1edbf52bf0dd {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_598d929.WGS.T.hg38 C3N-01261 CCRCC WGS tumor CPT0077480009 4b842477-f45b-4b95-81fe-f99660014989_wgs_gdc_realn.bam 74911836154 BAM harmonized CPTAC3 52ab7155-a122-4cba-a276-b0c340512ade 30e415ddd4a876ba4b4264f5c3cde23c {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_598d929.WXS.T C3N-01261 CCRCC WXS tumor CPT0077480009 CPT0077480009.WholeExome.RP-1303.bam 22362534889 BAM aligned CPTAC3 18bf9a71-df55-422e-b5ad-c12a7731c0d7 72171deddef7c1d2f8e123f57bed5f39 {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_598d929.WXS.T.hg38 C3N-01261 CCRCC WXS tumor CPT0077480009 4b842477-f45b-4b95-81fe-f99660014989_wxs_gdc_realn.bam 30792886836 BAM harmonized CPTAC3 66ec9da8-631e-4162-be2b-3ebfd70990aa 6383396bc2ff586c9cc23c859e0a862d {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_87c84ef8.MethArray.Green.T C3N-01261 CCRCC Methylation_Array tumor CPT0077470009 204372030013_R01C01_Grn.idat 13677895 IDAT Green NA CPTAC3 bdc6052a-7b1b-4d3a-9079-ef000f5791a8 30bf989f954f5b1ce9cc0a9010d52833 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_87c84ef8.MethArray.Red.T C3N-01261 CCRCC Methylation_Array tumor CPT0077470009 204372030013_R01C01_Red.idat 13677895 IDAT Red NA CPTAC3 813d0149-207c-4265-a63b-507aa644a3de c682b869c78039cb7cacef87c9bff8dd {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_87c84ef8.WGS.T C3N-01261 CCRCC WGS tumor CPT0077470009 CPT0077470009.WholeGenome.RP-2158.bam 25879813649 BAM aligned CPTAC3 ec944137-0e6d-480d-b9bb-562e495dee33 25a1d6a1e1939bb1be5a80e8d6caa56b {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_87c84ef8.WGS.T.hg38 C3N-01261 CCRCC WGS tumor CPT0077470009 42e07145-2697-49bc-b54a-a0b8d6252b63_wgs_gdc_realn.bam 74631684415 BAM harmonized CPTAC3 bd697b2e-37d6-4c74-945a-e5e2880122c3 b8fab6d42e9b7247d9ece3b9b032c557 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_87c84ef8.WXS.T C3N-01261 CCRCC WXS tumor CPT0077470009 CPT0077470009.WholeExome.RP-1303.bam 21240754844 BAM aligned CPTAC3 3750acfa-8a61-46b2-addf-e7a24d122c31 65520e427bef60e3bc4bbda4ba27ec50 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_87c84ef8.WXS.T.hg38 C3N-01261 CCRCC WXS tumor CPT0077470009 42e07145-2697-49bc-b54a-a0b8d6252b63_wxs_gdc_realn.bam 29032079012 BAM harmonized CPTAC3 71c381f1-b25f-48ee-a388-f9e2644735ec 58f3fdf815db3c49ff40eb9cc7a32893 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_9527c4b8.miRNA-Seq.S25_L004_R1.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077480006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACGAT_S25_L004_R1_001.unaln.bam 393524491 BAM S25_L004_R1 unaligned CPTAC3 a5f1dfb6-27de-4023-b9b9-8c1a9a9fb7a9 a9d6c6bfa2a1782284665fcd6c1527b4 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_9527c4b8.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077480006 a8df5a9e-3d35-497b-9261-82f1953c4080_mirnaseq_gdc_realn.bam 436046741 BAM harmonized CPTAC3 1f7a67fe-5434-4cef-b99a-92bff6d51844 634007af42b16681e72b6be3760684a0 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_9527c4b8.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.chimeric.gdc_realn.bam 257449426 BAM chimeric harmonized CPTAC3 8ee9bd34-2b1c-4801-a7d2-0224992418b5 e5fecf4394a492264545b94c00c54582 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_9527c4b8.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.genomic.gdc_realn.bam 7726245895 BAM genomic harmonized CPTAC3 85ccfaf2-642e-43ff-ad6c-8aa7a5de0d8b 01557b8f1212e6f528b449fa0083275c {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_9527c4b8.RNA-Seq.S11_L003_R1.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R1_001.fastq.gz 3786784188 FASTQ S11_L003_R1 unaligned CPTAC3 94432a7f-6bc9-476f-b180-6cf3be17d99d bfa5728f0170ff8f0bbaa2a85d71a7b1 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_9527c4b8.RNA-Seq.S11_L003_R2.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R2_001.fastq.gz 4209702146 FASTQ S11_L003_R2 unaligned CPTAC3 e84f5faf-e3b4-4324-91d2-699d6fbad519 2cbed543a36f3ec3c301e2f5ced6e5d8 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01261.DUP_9527c4b8.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.transcriptome.gdc_realn.bam 9416853650 BAM transcriptome harmonized CPTAC3 b77a9835-b214-4b4a-afa9-954b75a173a3 05602b3bd833b2519a930841b7204c30 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01261.MethArray.Green.A C3N-01261 CCRCC Methylation_Array tissue_normal CPT0077500009 204930640023_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e24f3118-4b8d-436e-a272-120fe41be4ed 788fb85143a79f5ace6e5c8127a2564a {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.MethArray.Green.T C3N-01261 CCRCC Methylation_Array tumor CPT0077490009 202184990059_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d00b0a0c-5332-4fff-8b9d-6a9428b2a35a 7aecaac59c865f47e34f6ea8880c6a06 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor"} -C3N-01261.MethArray.Red.A C3N-01261 CCRCC Methylation_Array tissue_normal CPT0077500009 204930640023_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 7bd13ef6-1ab7-4786-901e-9e179493667b 34ef88c0bbec4c5a32bdbb72f5c798d9 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.MethArray.Red.T C3N-01261 CCRCC Methylation_Array tumor CPT0077490009 202184990059_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 8d20c0ac-eff1-47e7-b6dc-80c80dfa3422 a60072db81368aa24dce82ea6a7cc8f9 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor"} -C3N-01261.miRNA-Seq.A.hg38 C3N-01261 CCRCC miRNA-Seq tissue_normal CPT0077500006 202100bc-7b09-4648-9f4f-ef8f760d0996_mirnaseq_gdc_realn.bam 182007436 BAM harmonized CPTAC3 0f8a7653-72b9-4e9c-b52a-5ea0ffcf4b2f 35e6b559cb82e0466dbd1ddfb4982a47 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.miRNA-Seq.S20_L003_R1.A C3N-01261 CCRCC miRNA-Seq tissue_normal CPT0077500006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 164844525 BAM S20_L003_R1 unaligned CPTAC3 9e439b78-0d19-409d-9555-9e51f3ea304e f9731d6d6142f5789ae9be11b07087bb {"aliquot_tag": "ALQ_6e0b5cdc", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.miRNA-Seq.S8_L008_R1.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077490006 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L008_R1_001.unaln.bam 217343665 BAM S8_L008_R1 unaligned CPTAC3 45479a7d-231a-4363-abda-89e845bfe773 ed6513912aaace50aeb0e73bd183888f {"aliquot_tag": "ALQ_a847ed08", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01261.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077490006 990eeb02-de23-4d83-99df-65b7babfbfa5_mirnaseq_gdc_realn.bam 240657784 BAM harmonized CPTAC3 dec0b9e9-0041-4062-92a8-d52f7e9971ad ac44eb590aaea7cde3ff2b353056be2c {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor"} -C3N-01261.RNA-Seq.chimeric.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.chimeric.gdc_realn.bam 75052516 BAM chimeric harmonized CPTAC3 fae1832f-218b-4f30-93c6-5433fe6bbca2 7705a0a298005a9399034dfe2d14c761 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.chimeric.gdc_realn.bam 219526899 BAM chimeric harmonized CPTAC3 fb5b0bdc-f08c-43e8-898f-ab020e8d05bf e018d5238756e98531ba0d839854b8a9 {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor"} -C3N-01261.RNA-Seq.genomic.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.genomic.gdc_realn.bam 6875447975 BAM genomic harmonized CPTAC3 a26331c7-9d6e-4db3-af92-055feb14d5a8 dd8841b43fbc2d2d490a5c8305733389 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.genomic.gdc_realn.bam 5702877798 BAM genomic harmonized CPTAC3 51679d02-120d-4664-88a8-f768f58d5681 c937007d2a28f744946c8743706cb9db {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor"} -C3N-01261.RNA-Seq.S3_L001_R1.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3171933083 FASTQ S3_L001_R1 unaligned CPTAC3 5e055bcb-7988-4721-abca-d6ba8ddf2859 aae8d12ccb6e018c19fc5b6828d66128 {"aliquot_tag": "ALQ_a847ed08", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01261.RNA-Seq.S3_L001_R2.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3503487635 FASTQ S3_L001_R2 unaligned CPTAC3 eca54c3f-6f8a-48a5-ae0e-5f82c5d65522 7d4d0c50450ce43347cd23d2b8bbfdaa {"aliquot_tag": "ALQ_a847ed08", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01261.RNA-Seq.S6_L002_R1.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 3320794151 FASTQ S6_L002_R1 unaligned CPTAC3 bf23dd02-c938-4b78-855e-fde50768436a 0c9bc6cdee59c3d8328ef0e5675c2428 {"aliquot_tag": "ALQ_6e0b5cdc", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.RNA-Seq.S6_L002_R2.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 3708468352 FASTQ S6_L002_R2 unaligned CPTAC3 54968b79-2539-4097-90cc-160d7a2006c8 673c2e935208732a696dc73619628f7f {"aliquot_tag": "ALQ_6e0b5cdc", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.RNA-Seq.transcriptome.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.transcriptome.gdc_realn.bam 8544270633 BAM transcriptome harmonized CPTAC3 1ba65821-ae37-4628-9c52-ff6cf70fd434 853f94ff3cc65bc4b6bece7d1bb9ce03 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.transcriptome.gdc_realn.bam 8004269212 BAM transcriptome harmonized CPTAC3 9c57de4d-0254-44cf-8a29-975480d870d2 7e48e70e3e0f631cf255f4594eea0d2d {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor"} -C3N-01261.WGS.A C3N-01261 CCRCC WGS tissue_normal CPT0077500009 CPT0077500009.WholeGenome.RP-1303.bam 56275750780 BAM aligned CPTAC3 88fa7665-0c2d-465d-900a-5d7643f652d3 e5fd4081584a41ba23fda380eef42b59 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.WGS.A.hg38 C3N-01261 CCRCC WGS tissue_normal CPT0077500009 ff04c8ea-0993-4b3d-9cd1-a2f15a53c12d_wgs_gdc_realn.bam 83298986948 BAM harmonized CPTAC3 f0c4915d-35a7-42a3-9b63-a4ffce6740d0 e75165a1ceeda7f667017f5aed4be1e0 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.WGS.N C3N-01261 CCRCC WGS blood_normal CPT0077590002 CPT0077590002.WholeGenome.RP-1303.bam 75733928284 BAM aligned CPTAC3 f7b10229-a46a-4c2a-bfe8-7b7e0d0f7ba0 ed96be14bf0502385b36ee3271836dc2 {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01261.WGS.N.hg38 C3N-01261 CCRCC WGS blood_normal CPT0077590002 93bfb3d4-6285-4819-b54b-96c9994f54d4_gdc_realn.bam 113959147222 BAM harmonized CPTAC3 0149d329-7d6e-45c3-b60d-6655ef74d6e9 48328f6f758f0eb00beeeeff64fb721f {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01261.WGS.T C3N-01261 CCRCC WGS tumor CPT0077490009 CPT0077490009.WholeGenome.RP-1303.bam 64023121963 BAM aligned CPTAC3 959287fa-6f98-4809-b2e4-d97a18cd7ef0 306572e01a4daef23170139bffa8b830 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor"} -C3N-01261.WGS.T.hg38 C3N-01261 CCRCC WGS tumor CPT0077490009 991614e1-a4d3-44c4-a18a-dca3a34f009e_gdc_realn.bam 96606566049 BAM harmonized CPTAC3 3bbbdc9f-9468-4fa4-af6e-e2b0d55979e2 9f8d204ac449291404e85e8f7880be99 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor"} -C3N-01261.WXS.A C3N-01261 CCRCC WXS tissue_normal CPT0077500009 CPT0077500009.WholeExome.RP-1303.bam 34208387484 BAM aligned CPTAC3 6e37f58c-ee5b-4980-8e1f-c84cc2bc657b 9f03fd95a46c03d7d2d980937e2b2bd6 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.WXS.A.hg38 C3N-01261 CCRCC WXS tissue_normal CPT0077500009 ff04c8ea-0993-4b3d-9cd1-a2f15a53c12d_wxs_gdc_realn.bam 46447409659 BAM harmonized CPTAC3 c75b2794-04ab-4c1d-bc99-a504429be731 8c807cf57e8df933498ecb938e464dc6 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01261.WXS.N C3N-01261 CCRCC WXS blood_normal CPT0077590002 CPT0077590002.WholeExome.RP-1303.bam 28676506281 BAM aligned CPTAC3 893d4d99-685e-4bab-935d-9a35519c9a63 b27b123b4595c9fabc9c546f567ffb9e {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01261.WXS.N.hg38 C3N-01261 CCRCC WXS blood_normal CPT0077590002 93bfb3d4-6285-4819-b54b-96c9994f54d4_gdc_realn.bam 38961955036 BAM harmonized CPTAC3 96cc5663-6c2f-44fe-b109-9985a54d138e e9f7010590ac5d53409a60eefd990404 {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01261.WXS.T C3N-01261 CCRCC WXS tumor CPT0077490009 CPT0077490009.WholeExome.RP-1303.bam 24649491134 BAM aligned CPTAC3 6e8fa032-893d-48c5-a833-d4f048d7c4f0 1b781825dedc1822d9629740b7488a52 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor"} -C3N-01261.WXS.T.hg38 C3N-01261 CCRCC WXS tumor CPT0077490009 991614e1-a4d3-44c4-a18a-dca3a34f009e_gdc_realn.bam 33798882094 BAM harmonized CPTAC3 d22da425-d65c-412c-a2b2-74ff21d39edc 371f6e75ced50d00c04d826f9e663b6b {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor"} -C3N-01267.MethArray.Green.T C3N-01267 UCEC Methylation_Array tumor CPT0027970009 202184900111_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 3c376145-b897-4861-bedd-29f03c3b5c86 8e51c467354f16c2e817e1b55026edca {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor"} -C3N-01267.MethArray.Red.T C3N-01267 UCEC Methylation_Array tumor CPT0027970009 202184900111_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 fefbd019-2d64-42d7-bf7e-54124315b34e 8fe61c1b06ef8ddbd0efd1ed0aa1dcbb {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor"} -C3N-01267.miRNA-Seq.S25_L004_R1.T C3N-01267 UCEC miRNA-Seq tumor CPT0027970006 181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L004_R1_001.unaln.bam 276187905 BAM S25_L004_R1 unaligned CPTAC3 046b8172-a254-4b12-a76e-a979560f1662 8a4ecfb1d97d7e302e194ff113ef50d9 {"aliquot_tag": "ALQ_e3094ed3", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01267.miRNA-Seq.T.hg38 C3N-01267 UCEC miRNA-Seq tumor CPT0027970006 d64b3493-643b-4bad-a009-e8558d048071_mirnaseq_gdc_realn.bam 304888226 BAM harmonized CPTAC3 f87e0dfd-4c84-402d-83a5-894f41d6b47d 509ab95e775da73471fb7ecddc680944 {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.chimeric.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.chimeric.gdc_realn.bam 106655079 BAM chimeric harmonized CPTAC3 02b50d0a-58b3-4303-a5e2-ead3df6f3413 f1439ec369049ac4bb6362a930d3bc51 {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.chimeric.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.chimeric.gdc_realn.bam 164775486 BAM chimeric harmonized CPTAC3 babc1131-d145-40a4-9211-0611d659b518 d5aee35179c2556f2466ec5822bff121 {"aliquot_tag": "ALQ_64ca7521", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.genomic.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.genomic.gdc_realn.bam 11487985131 BAM genomic harmonized CPTAC3 766c37aa-e6eb-482c-80a9-e44f7a7e960d 2d121bf12a0d2f7caa7aabf6234a0241 {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.genomic.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.genomic.gdc_realn.bam 8356262268 BAM genomic harmonized CPTAC3 4d2c5c4b-30ad-4226-8daf-1daa1604800d d9983e626082ce20b90bf8ff96286a72 {"aliquot_tag": "ALQ_64ca7521", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.S18_L005_R1.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 5686283942 FASTQ S18_L005_R1 unaligned CPTAC3 63431135-a82e-4a29-a17d-70ca5b7def70 b4328b79f0334daaed17db93a1cf3f4e {"aliquot_tag": "ALQ_e3094ed3", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.S18_L005_R2.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 6163184337 FASTQ S18_L005_R2 unaligned CPTAC3 a09574f4-c3e1-428c-a8a0-412950a3872a e5622f9e9cd5e8669f0a076740b3d3b9 {"aliquot_tag": "ALQ_e3094ed3", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.S35_R1.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R1_001.fastq.gz 4990758725 FASTQ S35_R1 unaligned CPTAC3 68c9c5e4-b847-4c3d-8660-4616feac2ff6 d7c20600573918b9e0a1290b588f77c0 {"aliquot_tag": "ALQ_64ca7521", "sample": "S35", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.S35_R2.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R2_001.fastq.gz 5205513774 FASTQ S35_R2 unaligned CPTAC3 b90475eb-62a2-4be4-a31e-989bf1810c20 4dd8c725787542652708c1380b1749a5 {"aliquot_tag": "ALQ_64ca7521", "sample": "S35", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.transcriptome.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.transcriptome.gdc_realn.bam 14988924488 BAM transcriptome harmonized CPTAC3 0400c3d0-d6e3-4cf5-9087-7909a2a9a212 e568cf1b6fd19f83f98c939cb28c728f {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor"} -C3N-01267.RNA-Seq.transcriptome.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.transcriptome.gdc_realn.bam 4535225100 BAM transcriptome harmonized CPTAC3 6e68ebe3-31bf-48fb-9922-ceed7fc8ac6b 50d8894595a60aecb416d763cd323e68 {"aliquot_tag": "ALQ_64ca7521", "gdc_sample_type": "Primary Tumor"} -C3N-01267.WGS.N C3N-01267 UCEC WGS blood_normal CPT0028110002 CPT0028110002.WholeGenome.RP-1303.bam 69583043979 BAM aligned CPTAC3 1db5b9d3-67d6-4d6f-97e1-960036e545b7 12eb429e996cb17b3e2d1b7a755850d8 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal"} -C3N-01267.WGS.N.hg38 C3N-01267 UCEC WGS blood_normal CPT0028110002 ef8eadff-62be-4e36-a2d3-9d4a618b2ff2_gdc_realn.bam 101592864336 BAM harmonized CPTAC3 a532762d-a05a-4be3-911a-21a9c44c1c5c d4090c8a94f54e63a087761ed27650d7 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal"} -C3N-01267.WGS.T C3N-01267 UCEC WGS tumor CPT0027970009 CPT0027970009.WholeGenome.RP-1303.bam 67074734263 BAM aligned CPTAC3 a8ebd5ad-5140-4171-8005-4d4629b4313d bd9bbc4b907047346c73bfb6c63bcf34 {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor"} -C3N-01267.WGS.T.hg38 C3N-01267 UCEC WGS tumor CPT0027970009 441ce217-806a-46cc-84fd-6391b0ba2d82_gdc_realn.bam 98922759749 BAM harmonized CPTAC3 6a16e63f-e0cb-4ff2-bc69-f077232f3b2c 416e4dc76e312304da3d0ca57759fdae {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor"} -C3N-01267.WXS.N C3N-01267 UCEC WXS blood_normal CPT0028110002 CPT0028110002.WholeExome.RP-1303.bam 25329097293 BAM aligned CPTAC3 a34f5976-b993-4ecf-b10e-b087dc50dfd7 636cb37095abb7b861609a45d831e796 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal"} -C3N-01267.WXS.N.hg38 C3N-01267 UCEC WXS blood_normal CPT0028110002 ef8eadff-62be-4e36-a2d3-9d4a618b2ff2_gdc_realn.bam 34314132823 BAM harmonized CPTAC3 1042e2b7-3bc3-4b8d-8437-bd7bfdf5d5d4 69e206e9500a265b909075df9e2e2256 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal"} -C3N-01267.WXS.T C3N-01267 UCEC WXS tumor CPT0027970009 CPT0027970009.WholeExome.RP-1303.bam 32443133408 BAM aligned CPTAC3 1a29b2c3-51e2-409e-8e3d-d6ac729b1873 541af6cf9e23e036ece375d7b28a1bde {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor"} -C3N-01267.WXS.T.hg38 C3N-01267 UCEC WXS tumor CPT0027970009 441ce217-806a-46cc-84fd-6391b0ba2d82_gdc_realn.bam 43958692897 BAM harmonized CPTAC3 fc5809c5-56de-45d7-8805-0ef944f75972 45b1bb4ef7b7e5768b880aaeb1241250 {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor"} -C3N-01270.MethArray.Green.T C3N-01270 CCRCC Methylation_Array tumor CPT0379980009 205555380179_R04C01_Grn.idat 13677960 IDAT Green NA CPTAC3 ca8a26de-224b-4ae3-9a46-d7096ee4ac9a 29b79ebdcb8d01eaab1021b2a2df7caf {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01270.MethArray.Red.T C3N-01270 CCRCC Methylation_Array tumor CPT0379980009 205555380179_R04C01_Red.idat 13677960 IDAT Red NA CPTAC3 6c1aed5a-8f7e-4c76-9f89-2bb3aa98caaa ddef2b60613f978b033f3c0a1cd38bd2 {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01270.miRNA-Seq.S47_L003_R1.T C3N-01270 CCRCC miRNA-Seq tumor CPT0379980006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TGACCA_S47_L003_R1_001.unaln.bam 296899051 BAM S47_L003_R1 unaligned CPTAC3 3a4c35aa-b291-4dc0-9dae-490fa66ba448 d645a43d86e36a3214cfd02047451184 {"aliquot_tag": "ALQ_400b90fe", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01270.miRNA-Seq.T.hg38 C3N-01270 CCRCC miRNA-Seq tumor CPT0379980006 09c29468-8198-4938-9528-84e42671821c_mirnaseq_gdc_realn.bam 317659746 BAM harmonized CPTAC3 202ca8c5-4688-4a1f-88c8-a31b946880c2 516652ad598203a3286aca5ccb6cb356 {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor"} -C3N-01270.RNA-Seq.chimeric.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.chimeric.gdc_realn.bam 84546035 BAM chimeric harmonized CPTAC3 75dbf0f4-5a54-4810-90fd-6f14231cbf35 5fe7708e824fb31c68a8d3ae1442510f {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor"} -C3N-01270.RNA-Seq.genomic.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.genomic.gdc_realn.bam 8588571908 BAM genomic harmonized CPTAC3 f5e8c458-8837-48c4-9562-9c521ce9e9d0 48495ad2037b48e3848c717c4a0f333d {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor"} -C3N-01270.RNA-Seq.S29_L008_R1.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 4022165445 FASTQ S29_L008_R1 unaligned CPTAC3 0898addb-d937-47ec-a08c-254a9b47aac1 3ef09fe088d58613b521a590d996a9c3 {"aliquot_tag": "ALQ_400b90fe", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01270.RNA-Seq.S29_L008_R2.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 4643494347 FASTQ S29_L008_R2 unaligned CPTAC3 daca7c43-c7a1-490b-a280-1fa6dae51b2e 5b18e29be0dd5c3f2d23c32d6367c7ab {"aliquot_tag": "ALQ_400b90fe", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01270.RNA-Seq.transcriptome.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.transcriptome.gdc_realn.bam 10362064235 BAM transcriptome harmonized CPTAC3 d1b4b2cd-4c9d-4778-9777-b82e57dfe90a b42041bf0cbc6fa422d62a5265a88d94 {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor"} -C3N-01270.scRNA-Seq.S1_L002_R1.T C3N-01270 CCRCC scRNA-Seq tumor CPT0379980004 20220127_WUSTL_TWFU-CPT0379980004-Y1N1Z1_1Bn1_1_TCCGGGACAA+GTGAATGCCA_S1_L002_R1_001.fastq.gz 4608609131 FASTQ S1_L002_R1 unaligned CPTAC3 de277094-9027-46dc-b4f8-0c935f517427 dbe5a86ba6a176c1fa475d4ba536c698 {"aliquot_tag": "ALQ_ae05f1d2", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01270.scRNA-Seq.S1_L002_R2.T C3N-01270 CCRCC scRNA-Seq tumor CPT0379980004 20220127_WUSTL_TWFU-CPT0379980004-Y1N1Z1_1Bn1_1_TCCGGGACAA+GTGAATGCCA_S1_L002_R2_001.fastq.gz 16230272129 FASTQ S1_L002_R2 unaligned CPTAC3 c4c1da37-4642-4601-88f7-45528d058db5 c09633ed95e48f203e1d920fc76a06af {"aliquot_tag": "ALQ_ae05f1d2", "sample": "S1", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01270.WGS.N C3N-01270 CCRCC WGS blood_normal CPT0380060002 CPT0380060002.WholeGenome.RP-2158.bam 23683580215 BAM aligned CPTAC3 9326b369-e74e-48a7-8c40-cf479097394f f0c95aae9082650ec6cd91b4ebc44605 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal"} -C3N-01270.WGS.N.hg38 C3N-01270 CCRCC WGS blood_normal CPT0380060002 a28bbf6b-2874-4a64-b595-677c311757ec_wgs_gdc_realn.bam 72517616586 BAM harmonized CPTAC3 22bc60dc-186d-4097-bd75-e17b16c2f828 a8b363391d2fe11bc2b4f3b23b9c8091 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal"} -C3N-01270.WGS.T C3N-01270 CCRCC WGS tumor CPT0379980009 CPT0379980009.WholeGenome.RP-2158.bam 34128078847 BAM aligned CPTAC3 ba70be97-27d2-4442-b1e5-02f7072934e3 762c2abc06bd786eda98440fa382b119 {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01270.WGS.T.hg38 C3N-01270 CCRCC WGS tumor CPT0379980009 3e9dc217-f4cf-44f0-ac2c-e354ab41a3e4_wgs_gdc_realn.bam 104013512562 BAM harmonized CPTAC3 79848237-2bc5-4312-bff2-8fb2e28b01d7 f43387e19cf5bb0700bb9ba17e0b9091 {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01270.WXS.N C3N-01270 CCRCC WXS blood_normal CPT0380060002 CPT0380060002.WholeExome.RP-1303.bam 30951279448 BAM aligned CPTAC3 91243102-ba8e-445a-87db-88ca9ed556a0 4614559de2562685fcdf3b084063f796 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal"} -C3N-01270.WXS.N.hg38 C3N-01270 CCRCC WXS blood_normal CPT0380060002 a28bbf6b-2874-4a64-b595-677c311757ec_wxs_gdc_realn.bam 42384785619 BAM harmonized CPTAC3 25d9db2e-f25a-461b-856d-8dacaf8b17f5 4d77711457900cf38331accd44f93c19 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal"} -C3N-01270.WXS.T C3N-01270 CCRCC WXS tumor CPT0379980009 CPT0379980009.WholeExome.RP-1303.bam 19764992099 BAM aligned CPTAC3 9ed94481-a4b5-450b-9342-00131230b45d dd898e2cbc859a539661f568784470aa {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01270.WXS.T.hg38 C3N-01270 CCRCC WXS tumor CPT0379980009 3e9dc217-f4cf-44f0-ac2c-e354ab41a3e4_wxs_gdc_realn.bam 27327520297 BAM harmonized CPTAC3 56ab4459-26fa-40a6-b7a1-d27e782d4e88 8407972359c7b5f39cc664cb6c5e238d {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01334.MethArray.Green.T C3N-01334 GBM Methylation_Array tumor CPT0125220006 203027390113_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b5b25ff8-f307-4d31-a85e-59dae5f22b60 ad0bf9bbfc8396e978a0f5aff290bff7 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor"} -C3N-01334.MethArray.Red.T C3N-01334 GBM Methylation_Array tumor CPT0125220006 203027390113_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 d97ecf6e-6506-4e2f-81a7-90d0df50bd64 f95ffdf05cc7d399fbfe13a5c42f1280 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor"} -C3N-01334.miRNA-Seq.S7_L001_R1.T C3N-01334 GBM miRNA-Seq tumor CPT0125220009 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 250135148 BAM S7_L001_R1 unaligned CPTAC3 81dc77c5-3629-4def-a2d6-b0df52ae1362 a63683b5b419fb7151f3b5da6982b112 {"aliquot_tag": "ALQ_5175299b", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01334.miRNA-Seq.T.hg38 C3N-01334 GBM miRNA-Seq tumor CPT0125220009 a13249af-193b-4239-9751-91a6c60b8dfd_mirnaseq_gdc_realn.bam 275759979 BAM harmonized CPTAC3 6a099608-bb61-421e-b952-3e8ed83d064d 5a26a65f9d4122ad3aa1cfc49d1d420b {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor"} -C3N-01334.RNA-Seq.chimeric.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.chimeric.gdc_realn.bam 128567152 BAM chimeric harmonized CPTAC3 c19f5d92-751c-4949-b729-e6b6ff4aa581 cbb0153e86bb24f7bd9182a16eaee89e {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor"} -C3N-01334.RNA-Seq.genomic.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.genomic.gdc_realn.bam 8680737484 BAM genomic harmonized CPTAC3 e883d26e-53a8-4459-94ce-4cc678216cf3 be11863e9a2b542cd8953e88a4d7eda7 {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor"} -C3N-01334.RNA-Seq.S8_L007_R1.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R1_001.fastq.gz 3964104440 FASTQ S8_L007_R1 unaligned CPTAC3 3cc957f8-1cd0-4197-96b8-30bd1a5cc776 85c17b002082377d2c99cc1d6e962e04 {"aliquot_tag": "ALQ_5175299b", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01334.RNA-Seq.S8_L007_R2.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R2_001.fastq.gz 4396759449 FASTQ S8_L007_R2 unaligned CPTAC3 a6823ef4-4fb2-4188-8214-4de92ce913a2 baccb61de188456f5868f6a6ea2a68fb {"aliquot_tag": "ALQ_5175299b", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01334.RNA-Seq.transcriptome.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.transcriptome.gdc_realn.bam 9235189524 BAM transcriptome harmonized CPTAC3 359a248b-c888-4dfc-bbb0-f3da1a1c2834 3df2906ecfc7e9d712e4cd3183ab72ba {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor"} -C3N-01334.scRNA-Seq.S3_L001_R1.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R1_001.fastq.gz 9509432240 FASTQ S3_L001_R1 unaligned CPTAC3 9c645991-b038-4ee7-9388-61b31e0f800b 61ffdb1fc8c97c668fddacdc441b119c {"aliquot_tag": "ALQ_2fc45526", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01334.scRNA-Seq.S3_L001_R2.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R2_001.fastq.gz 22676722596 FASTQ S3_L001_R2 unaligned CPTAC3 444e55b6-4c1c-437e-b097-1f6fe70ce245 7759b9bd6edca8c6e5eefc01bfca73ac {"aliquot_tag": "ALQ_2fc45526", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01334.scRNA-Seq.T.hg38 C3N-01334 GBM scRNA-Seq tumor CPT0125220004 possorted_genome_bam.bam 25480646057 BAM harmonized CPTAC3 c2689d4e-8fb5-406d-9a9c-d379d950037f bca03b32d20bb26aaceebdbf37ee5959 {"aliquot_tag": "ALQ_2fc45526", "gdc_sample_type": "Primary Tumor"} -C3N-01334.WGS.N C3N-01334 GBM WGS blood_normal CPT0125250002 CPT0125250002.WholeGenome.RP-1303.bam 62961118881 BAM aligned CPTAC3 998a823c-24d7-41ec-865a-62c9ee65a71b 508d106bef15c7131942375e690581f4 {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal"} -C3N-01334.WGS.N.hg38 C3N-01334 GBM WGS blood_normal CPT0125250002 1f02adc4-0b20-4fd3-ad08-5d4c6b3b4b18_wgs_gdc_realn.bam 90333471413 BAM harmonized CPTAC3 5980d118-12c4-440c-ba3d-3edfa259658a 0861cc27aa030704e8e9f2f7896aa8bb {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal"} -C3N-01334.WGS.T C3N-01334 GBM WGS tumor CPT0125220006 CPT0125220006.WholeGenome.RP-1303.bam 62455774887 BAM aligned CPTAC3 655943fb-8990-4690-8bd0-1586f06b911e 415f953131f169bdfc70c6554a0aa234 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor"} -C3N-01334.WGS.T.hg38 C3N-01334 GBM WGS tumor CPT0125220006 db1b4053-ac2a-4da7-b360-488978fbf6c4_wgs_gdc_realn.bam 92894519288 BAM harmonized CPTAC3 d674d610-4fa5-4838-a145-4f60c956c43d 12f8364e9b4ddbad5c3474bbd9e8fded {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor"} -C3N-01334.WXS.N C3N-01334 GBM WXS blood_normal CPT0125250002 CPT0125250002.WholeExome.RP-1303.bam 26822439471 BAM aligned CPTAC3 7dfcb865-a511-4589-8533-c8bc5d788102 bdcd79363c8ebb023e91920b30188743 {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal"} -C3N-01334.WXS.N.hg38 C3N-01334 GBM WXS blood_normal CPT0125250002 1f02adc4-0b20-4fd3-ad08-5d4c6b3b4b18_wxs_gdc_realn.bam 36108215795 BAM harmonized CPTAC3 b1233ee5-09c1-4070-9e7d-7aa51c315b44 d460ef0d3555b028f73591f72b118844 {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal"} -C3N-01334.WXS.T C3N-01334 GBM WXS tumor CPT0125220006 CPT0125220006.WholeExome.RP-1303.bam 36570438445 BAM aligned CPTAC3 8b77dd43-97e5-409a-bd45-72c30fba641e 5144a7dc4441e1d236f16ed834b93f96 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor"} -C3N-01334.WXS.T.hg38 C3N-01334 GBM WXS tumor CPT0125220006 db1b4053-ac2a-4da7-b360-488978fbf6c4_wxs_gdc_realn.bam 48687341321 BAM harmonized CPTAC3 4e608d9a-e784-407e-9a35-e6af8267613d 7db8777d1e15b7b677ef518e4d0563f6 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor"} -C3N-01337.MethArray.Green.T C3N-01337 HNSCC Methylation_Array tumor CPT0087990009 202234380051_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f929cc6a-fb6a-42f0-a101-ef1bbd3290a4 c2bc5e3e02fa4b0f1d77c8b27e6c702d {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor"} -C3N-01337.MethArray.Red.T C3N-01337 HNSCC Methylation_Array tumor CPT0087990009 202234380051_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 2baa9988-eda8-41ae-b86b-3626bf12982b 6cc75c34ec4a07ba3353ff4f73d9bf77 {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor"} -C3N-01337.miRNA-Seq.A.hg38 C3N-01337 HNSCC miRNA-Seq tissue_normal CPT0088010009 be8892cc-6283-4f31-a7a8-2382eba4b665_mirnaseq_gdc_realn.bam 233109023 BAM harmonized CPTAC3 400ee73c-583e-4683-9992-d5c151380ba2 a51183a97b629ead3768db7733176b18 {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.miRNA-Seq.S18_L006_R1.T C3N-01337 HNSCC miRNA-Seq tumor CPT0087990006 180828_UNC32-K00270_0112_AHWTLNBBXX_GCCAAT_S18_L006_R1_001.unaln.bam 198006398 BAM S18_L006_R1 unaligned CPTAC3 83985eb3-217f-45ac-b873-7c39b399874a dbe06a76e9d9a591600bbc2d84020aba {"aliquot_tag": "ALQ_cdf9ec7a", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01337.miRNA-Seq.S20_L005_R1.A C3N-01337 HNSCC miRNA-Seq tissue_normal CPT0088010009 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L005_R1_001.unaln.bam 210197153 BAM S20_L005_R1 unaligned CPTAC3 69f193d5-8ed4-43cc-a6ab-6493d0a69219 b89fc5470a41aecd9e9a1701694bd028 {"aliquot_tag": "ALQ_bc719b0b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.miRNA-Seq.T.hg38 C3N-01337 HNSCC miRNA-Seq tumor CPT0087990006 ad252f93-ea73-4060-ac55-3e373fecb9d2_mirnaseq_gdc_realn.bam 222355118 BAM harmonized CPTAC3 17713a9f-caa1-4f51-9dad-952106b04cf1 9426cd24732bac6a8e6e5cccb37738cb {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.chimeric.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.chimeric.gdc_realn.bam 12985563 BAM chimeric harmonized CPTAC3 f9f8dd90-26cf-4e3e-a7ae-8126446ab182 43d6f697a76c6b0fb4033d697859954d {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.RNA-Seq.chimeric.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.chimeric.gdc_realn.bam 40058562 BAM chimeric harmonized CPTAC3 329758c5-e4b7-4bd9-9065-056b3a9aa0c4 04b1ea177fd1acfe715de1de2e411a1e {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.chimeric.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.chimeric.gdc_realn.bam 138003437 BAM chimeric harmonized CPTAC3 9ba58794-4aae-4357-94df-6f6eb03f4036 d2f0d2749a404dc38179f9df59ca9503 {"aliquot_tag": "ALQ_1a1efe51", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.genomic.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.genomic.gdc_realn.bam 6424919842 BAM genomic harmonized CPTAC3 01fa620a-d5fa-4348-a95a-2d0007137307 2f3a191a2dcfaf25d4456efdb38a8c2c {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.RNA-Seq.genomic.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.genomic.gdc_realn.bam 11651430543 BAM genomic harmonized CPTAC3 ddcfb06f-f917-4fb6-8aff-969e085948dd f1ee10861f01c96d5a7391d88d239c10 {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.genomic.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.genomic.gdc_realn.bam 10689253959 BAM genomic harmonized CPTAC3 b10c7480-89c9-4859-a6bf-f5be06896fdb 6f8cdfb3e1b48e0d08848a17f20ee59a {"aliquot_tag": "ALQ_1a1efe51", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.S19_L005_R1.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 2503193362 FASTQ S19_L005_R1 unaligned CPTAC3 d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9 f14e7cfcb3694b6498962a0070984e27 {"aliquot_tag": "ALQ_bc719b0b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.RNA-Seq.S19_L005_R2.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 2776505428 FASTQ S19_L005_R2 unaligned CPTAC3 63d27db0-605c-48d9-9e25-5c93879a73cc 7971c960d46d4e23e8472aa0d137cb13 {"aliquot_tag": "ALQ_bc719b0b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.RNA-Seq.S2_L001_R1.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4788972008 FASTQ S2_L001_R1 unaligned CPTAC3 ea84dfa7-362e-41bd-af0a-9183260cee41 f8138408ce5cd65457f0a4ea0fa76076 {"aliquot_tag": "ALQ_cdf9ec7a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.S2_L001_R2.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 5466397642 FASTQ S2_L001_R2 unaligned CPTAC3 b59c44a2-261e-4035-a6a9-deb3160eadea 4ef30c903204fbf3fa8c3ca237004bd0 {"aliquot_tag": "ALQ_cdf9ec7a", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.S49_R1.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R1_001.fastq.gz 5846796128 FASTQ S49_R1 unaligned CPTAC3 20270207-1151-4641-b428-6b42171dd34b 490971bbd77c3163e69058564beb1131 {"aliquot_tag": "ALQ_1a1efe51", "sample": "S49", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.S49_R2.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R2_001.fastq.gz 5999541002 FASTQ S49_R2 unaligned CPTAC3 e84584b3-002c-4a60-8394-5c2036b94697 30c3adc61e3a5359efdc748c537d09e4 {"aliquot_tag": "ALQ_1a1efe51", "sample": "S49", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.transcriptome.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.transcriptome.gdc_realn.bam 8768088070 BAM transcriptome harmonized CPTAC3 a24b9a00-fd76-49cc-9c9d-cc82e176c733 3f9edf7080f9e1f9588c0df38542156c {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.RNA-Seq.transcriptome.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.transcriptome.gdc_realn.bam 13133808698 BAM transcriptome harmonized CPTAC3 b5affe34-1688-461d-93a3-7d3867f8d2c2 4d7953abed9c3db9dd108cc8f3b30b97 {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor"} -C3N-01337.RNA-Seq.transcriptome.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.transcriptome.gdc_realn.bam 7602069093 BAM transcriptome harmonized CPTAC3 d3004a74-fdc4-49b7-baa3-6293d8663dde 8e5e4321b35815f109fba5ea48320f9e {"aliquot_tag": "ALQ_1a1efe51", "gdc_sample_type": "Primary Tumor"} -C3N-01337.WGS.A C3N-01337 HNSCC WGS tissue_normal CPT0088010006 CPT0088010006.WholeGenome.RP-1303.bam 58905868115 BAM aligned CPTAC3 8567a66c-7b60-4ca4-9093-80ffe0e8366e 8d9a42e992a762a0b2b33a587edfd57f {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.WGS.A.hg38 C3N-01337 HNSCC WGS tissue_normal CPT0088010006 ccd05ad6-d909-4da7-8f5f-5326e0a6db42_wgs_gdc_realn.bam 85357987865 BAM harmonized CPTAC3 7232386e-c114-4ca2-ba4c-3a102becbb45 1311701ad03fe0ca19ea88bc64ac04fa {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.WGS.N C3N-01337 HNSCC WGS blood_normal CPT0088050002 CPT0088050002.WholeGenome.RP-1303.bam 59064767532 BAM aligned CPTAC3 1ae3d429-c5d9-49c7-bd77-05ee45a670f4 190961d9e81ed5e0f367246f68697971 {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal"} -C3N-01337.WGS.N.hg38 C3N-01337 HNSCC WGS blood_normal CPT0088050002 ff8d9b73-dfdd-4de7-b9e4-96176aa60f7d_wgs_gdc_realn.bam 87234854570 BAM harmonized CPTAC3 60c95aca-9e6b-45a5-9e5a-78d183ec859a c0172236ff009c651c7cf4a981021f1b {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal"} -C3N-01337.WGS.T C3N-01337 HNSCC WGS tumor CPT0087990009 CPT0087990009.WholeGenome.RP-1303.bam 68965730148 BAM aligned CPTAC3 a98723dd-9eba-4400-9147-b9ec4c277656 3b7add82b36923906a8f9692e2442113 {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor"} -C3N-01337.WGS.T.hg38 C3N-01337 HNSCC WGS tumor CPT0087990009 2da6fefd-4842-47be-9503-e87c867fb1dc_wgs_gdc_realn.bam 100634389854 BAM harmonized CPTAC3 f923d70c-5ce2-47a0-8839-dcacb1ebe529 b9ed16b3880b2e515f5735676f9e2aaa {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor"} -C3N-01337.WXS.A C3N-01337 HNSCC WXS tissue_normal CPT0088010006 CPT0088010006.WholeExome.RP-1303.bam 20757029708 BAM aligned CPTAC3 56365fa1-ffb8-414c-b8e4-ce84e850ab9a 2f4f172775ac0911a2ac1b582d2bd58e {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.WXS.A.hg38 C3N-01337 HNSCC WXS tissue_normal CPT0088010006 ccd05ad6-d909-4da7-8f5f-5326e0a6db42_wxs_gdc_realn.bam 28055438926 BAM harmonized CPTAC3 285066e5-4a9d-416d-b8c0-6c39a2b4381f 8d21a559892efc165acbc7af05f17eea {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01337.WXS.N C3N-01337 HNSCC WXS blood_normal CPT0088050002 CPT0088050002.WholeExome.RP-1303.bam 37601726782 BAM aligned CPTAC3 33cafe0e-7144-4102-8815-dc1fe93dc65b 2cb036b492b74e815a419f7df8df1fe1 {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal"} -C3N-01337.WXS.N.hg38 C3N-01337 HNSCC WXS blood_normal CPT0088050002 ff8d9b73-dfdd-4de7-b9e4-96176aa60f7d_wxs_gdc_realn.bam 50278234545 BAM harmonized CPTAC3 4906c7e4-36d8-48d7-89ca-3c3f1fd7de40 087f729ecae3f35a48f555e6ab579fd7 {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal"} -C3N-01337.WXS.T C3N-01337 HNSCC WXS tumor CPT0087990009 CPT0087990009.WholeExome.RP-1303.bam 38225467439 BAM aligned CPTAC3 5d84fba9-a45c-48a6-9a86-ffc5196ff65a dea21bf229f822e8e51de839e565bf52 {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor"} -C3N-01337.WXS.T.hg38 C3N-01337 HNSCC WXS tumor CPT0087990009 2da6fefd-4842-47be-9503-e87c867fb1dc_wxs_gdc_realn.bam 51820212804 BAM harmonized CPTAC3 7fc4285a-ecc0-43c5-b8d2-bc533f1c0249 1db81aa41101dd7ab43473ee28d55c6b {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor"} -C3N-01338.MethArray.Green.T C3N-01338 HNSCC Methylation_Array tumor CPT0088060010 202234360029_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5d2818f4-03f1-4a28-8214-05eb7a1bbe26 2db8e7c7a2c82d2350c0c84a30e5e7ff {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor"} -C3N-01338.MethArray.Red.T C3N-01338 HNSCC Methylation_Array tumor CPT0088060010 202234360029_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 fa004ddb-0153-4683-a5fe-112bb6523e03 875e7cfef5ff445ea868cc32e4b1fbbe {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor"} -C3N-01338.miRNA-Seq.A.hg38 C3N-01338 HNSCC miRNA-Seq tissue_normal CPT0088080009 96fe06b5-afa7-44ef-97a1-da4d59f9b53d_mirnaseq_gdc_realn.bam 214961287 BAM harmonized CPTAC3 22c2e47a-0431-4009-b549-696932f5aa3e e5c90314857073641943f5766a9156df {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.miRNA-Seq.S26_L008_R1.T C3N-01338 HNSCC miRNA-Seq tumor CPT0088060007 180724_UNC32-K00270_0106_BHWK3MBBXX_GGTAGC_S26_L008_R1_001.unaln.bam 201786751 BAM S26_L008_R1 unaligned CPTAC3 cf700d07-62d4-497c-a579-f52183ae7dde 25bc9e57670884b72a1148ddb2498924 {"aliquot_tag": "ALQ_e9e96a1c", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01338.miRNA-Seq.S3_L001_R1.A C3N-01338 HNSCC miRNA-Seq tissue_normal CPT0088080009 181119_UNC31-K00269_0165_AH27WCBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 196221651 BAM S3_L001_R1 unaligned CPTAC3 d2642e27-0a90-46d1-8c0c-e987fee2e53b 04bad105059211322e0c7291eff42f39 {"aliquot_tag": "ALQ_b161f97a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.miRNA-Seq.T.hg38 C3N-01338 HNSCC miRNA-Seq tumor CPT0088060007 2df227c0-96a8-4290-b869-9be58841c11f_mirnaseq_gdc_realn.bam 218161018 BAM harmonized CPTAC3 3a279538-ee20-45bd-aee4-02fa96a87a19 e3130ff812fdb64dc8f0d145748fbf61 {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor"} -C3N-01338.RNA-Seq.chimeric.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.chimeric.gdc_realn.bam 21862816 BAM chimeric harmonized CPTAC3 50344f6d-0e19-4806-983a-27622e6551d6 148876841519b4c29a256e713df65f75 {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.RNA-Seq.chimeric.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.chimeric.gdc_realn.bam 38894202 BAM chimeric harmonized CPTAC3 f4ab1fa1-55d2-482d-b5cc-b1ff2c3a4745 3ac68d5d7183b7a32f2e2ff8b9fb2f7b {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor"} -C3N-01338.RNA-Seq.genomic.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.genomic.gdc_realn.bam 8511166047 BAM genomic harmonized CPTAC3 f83d474d-300a-41ef-bb11-3c68557790c2 bc5ad5fee8bf434d998742920522f990 {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.RNA-Seq.genomic.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.genomic.gdc_realn.bam 9098282641 BAM genomic harmonized CPTAC3 da33fb81-312c-4fbd-9757-575a3e3927d9 5ce32604a9c0437624ae5a0d87124c12 {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor"} -C3N-01338.RNA-Seq.S17_L005_R1.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R1_001.fastq.gz 3862068086 FASTQ S17_L005_R1 unaligned CPTAC3 bc9c20c8-2b66-43f9-9af9-2e2a3ab09b66 24a2117d80fa957858f2b01e66b64177 {"aliquot_tag": "ALQ_b161f97a", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.RNA-Seq.S17_L005_R2.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4195077773 FASTQ S17_L005_R2 unaligned CPTAC3 07c5cb0b-e1c0-4fd9-bb00-2819c4c2c5e0 cfd2029fca5a0f32a0b233130d51bd7b {"aliquot_tag": "ALQ_b161f97a", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.RNA-Seq.S23_L008_R1.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R1_001.fastq.gz 4023050359 FASTQ S23_L008_R1 unaligned CPTAC3 5470e81f-8fc5-4e01-9c5d-41689344e47a 5cb345f5d9a2a66eb9bdb243d54cdc93 {"aliquot_tag": "ALQ_e9e96a1c", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01338.RNA-Seq.S23_L008_R2.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R2_001.fastq.gz 4490986247 FASTQ S23_L008_R2 unaligned CPTAC3 45bee5df-929e-442e-bbe8-2e2896674e63 6f80c879add3c41b55aebc5e06b921a4 {"aliquot_tag": "ALQ_e9e96a1c", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01338.RNA-Seq.transcriptome.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.transcriptome.gdc_realn.bam 12783838936 BAM transcriptome harmonized CPTAC3 2d877a80-9285-4aad-b07e-4b13f6149fa1 f892ac1688a69ee5859c30f6bc7564eb {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.RNA-Seq.transcriptome.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.transcriptome.gdc_realn.bam 12287465284 BAM transcriptome harmonized CPTAC3 cbeb6fe4-616c-41b4-80fd-750576e0b1d5 a3ac8722df28fd43e4801d35ecc3d405 {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor"} -C3N-01338.WGS.N C3N-01338 HNSCC WGS blood_normal CPT0088120002 CPT0088120002.WholeGenome.RP-1303.bam 85666598601 BAM aligned CPTAC3 b82fceaa-3807-4c23-a3ce-a7ee3cdc75ee 88f0522bcfc7007543f64c8e0f9227f1 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01338.WGS.N.hg38 C3N-01338 HNSCC WGS blood_normal CPT0088120002 395d904f-e1a8-4082-a6ff-cf63330a8d73_wgs_gdc_realn.bam 129181623799 BAM harmonized CPTAC3 9ada4774-c194-4831-9625-6a7aa60ec016 00e1e0a1ab126e1a778e0cb45de8c6a9 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01338.WGS.T C3N-01338 HNSCC WGS tumor CPT0088060010 CPT0088060010.WholeGenome.RP-1303.bam 61735475309 BAM aligned CPTAC3 0f9f01bc-1fd9-4404-82c9-06ed811a52f0 f6a14b0e3cbb645c3dacbe92fc5d74b7 {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor"} -C3N-01338.WGS.T.hg38 C3N-01338 HNSCC WGS tumor CPT0088060010 a0efd61b-a82a-49cc-911d-96c7f04ed245_wgs_gdc_realn.bam 92847757345 BAM harmonized CPTAC3 496b7c36-e667-4bf7-a8be-2772c170794f 02d98a12cf26e2f34edd84f76b0df4a3 {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor"} -C3N-01338.WXS.A C3N-01338 HNSCC WXS tissue_normal CPT0088080006 CPT0088080006.WholeExome.RP-1303.bam 27186659581 BAM aligned CPTAC3 caffb49f-a004-4e36-bad5-c4346a752ea5 0181c4ef233b91e37b3f1ec46df55098 {"aliquot_tag": "ALQ_21dee4eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.WXS.A.hg38 C3N-01338 HNSCC WXS tissue_normal CPT0088080006 d9e17e57-04e5-4ab3-963f-e6a934418cfe_wxs_gdc_realn.bam 37085451941 BAM harmonized CPTAC3 9f1f5e35-f51f-46fb-b18f-1759a76196ce 1ce9932fe92e8d281af43fa9a4b2624f {"aliquot_tag": "ALQ_21dee4eb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01338.WXS.N C3N-01338 HNSCC WXS blood_normal CPT0088120002 CPT0088120002.WholeExome.RP-1303.bam 32075900078 BAM aligned CPTAC3 3a7449d6-81dc-4ada-b560-73d2b78d70c0 d1f3de50298c8eb98b40fd277d2e65d4 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01338.WXS.N.hg38 C3N-01338 HNSCC WXS blood_normal CPT0088120002 395d904f-e1a8-4082-a6ff-cf63330a8d73_wxs_gdc_realn.bam 42752658709 BAM harmonized CPTAC3 b8359174-54fe-4706-b274-dbb4216fb2ef f89bea5e493757f5e7ccb50d7f7cf986 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01338.WXS.T C3N-01338 HNSCC WXS tumor CPT0088060010 CPT0088060010.WholeExome.RP-1303.bam 31760815544 BAM aligned CPTAC3 a203c334-5a41-42c9-b1a7-0ed61922ff13 61b9742f675a3bca592df50f514a075e {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor"} -C3N-01338.WXS.T.hg38 C3N-01338 HNSCC WXS tumor CPT0088060010 a0efd61b-a82a-49cc-911d-96c7f04ed245_wxs_gdc_realn.bam 43822875946 BAM harmonized CPTAC3 e51cad87-dc80-489a-a3c8-697fbc2016ad 7174273c5f3fe5fbda94186206565438 {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor"} -C3N-01339.MethArray.Green.T C3N-01339 HNSCC Methylation_Array tumor CPT0094490010 202234370095_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 466c649f-47e9-412c-8c7f-d769210fd479 2fd41e0bcd58bf2904fc2b0c33c5acf4 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor"} -C3N-01339.MethArray.Red.T C3N-01339 HNSCC Methylation_Array tumor CPT0094490010 202234370095_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 04f73d11-8e00-4f25-a5c2-5194d20224ab 303fbbd9f38518844ee43aed922f9c72 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor"} -C3N-01339.miRNA-Seq.S46_L007_R1.T C3N-01339 HNSCC miRNA-Seq tumor CPT0094490007 180828_UNC32-K00270_0112_AHWTLNBBXX_CTCAGA_S46_L007_R1_001.unaln.bam 214310804 BAM S46_L007_R1 unaligned CPTAC3 004bce29-28f2-40d7-aa25-0da3ffdb9037 7ca5075fec107a26a7d30538a7522857 {"aliquot_tag": "ALQ_fb22d531", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01339.miRNA-Seq.T.hg38 C3N-01339 HNSCC miRNA-Seq tumor CPT0094490007 73c5b03a-8449-445e-a74a-a28a3a4679e7_mirnaseq_gdc_realn.bam 242075044 BAM harmonized CPTAC3 c7bd1260-a615-424c-be99-6658fab2a0f1 3f5cad72aac996fafc27edf4e59c451f {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor"} -C3N-01339.RNA-Seq.chimeric.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.chimeric.gdc_realn.bam 47034486 BAM chimeric harmonized CPTAC3 80e3a76b-f7bd-4c82-a776-fa3f886ead13 c37d2e91c4bcb8e5216f5a2547afc28b {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor"} -C3N-01339.RNA-Seq.genomic.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.genomic.gdc_realn.bam 9534159671 BAM genomic harmonized CPTAC3 247989f8-45fc-4838-ac2a-73cb68b27c9c 410f41d8aeb07ec92b237ab5a0dbcb24 {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor"} -C3N-01339.RNA-Seq.S4_L001_R1.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R1_001.fastq.gz 4660955404 FASTQ S4_L001_R1 unaligned CPTAC3 d4987b3c-be5d-487a-9e52-74ea45ad64db 902d9245f4d6b3c0baa035b80116abfa {"aliquot_tag": "ALQ_fb22d531", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01339.RNA-Seq.S4_L001_R2.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R2_001.fastq.gz 4700114368 FASTQ S4_L001_R2 unaligned CPTAC3 9390e81d-ac41-4618-b97c-d69633ef5669 b9e0a4e0b80847fba0074d02f313cc2a {"aliquot_tag": "ALQ_fb22d531", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01339.RNA-Seq.transcriptome.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.transcriptome.gdc_realn.bam 9838748810 BAM transcriptome harmonized CPTAC3 152dfbbc-4d45-4f36-bc80-55d45ec8c84e 6e8e3090e71e22a8fc7b3a244deb1308 {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor"} -C3N-01339.WGS.N C3N-01339 HNSCC WGS blood_normal CPT0094550002 CPT0094550002.WholeGenome.RP-1303.bam 62208177802 BAM aligned CPTAC3 0530dcad-861d-4494-8eba-a086a9dda0e0 8585336c161d09a8e810651f646fbeb8 {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01339.WGS.N.hg38 C3N-01339 HNSCC WGS blood_normal CPT0094550002 4b2e3dab-1455-429e-b205-85434e5e888c_wgs_gdc_realn.bam 90873281871 BAM harmonized CPTAC3 ee89ec01-4041-4e1a-bd54-d8c411c09192 30a299fc492cf75ee057626c68d57d9c {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01339.WGS.T C3N-01339 HNSCC WGS tumor CPT0094490010 CPT0094490010.WholeGenome.RP-1303.bam 55719790090 BAM aligned CPTAC3 3da03d43-c24c-4174-abeb-ac923462eb7c 7787dc78408506c8aa988aab4fc9c76e {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor"} -C3N-01339.WGS.T.hg38 C3N-01339 HNSCC WGS tumor CPT0094490010 1e614b7c-3b45-455f-8314-99d4e3dc91fa_wgs_gdc_realn.bam 81781387131 BAM harmonized CPTAC3 67043d4a-9a8c-4ecd-bda5-4f7b7bb9a265 26db156174ae1737a6cfaa304f87f022 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor"} -C3N-01339.WXS.N C3N-01339 HNSCC WXS blood_normal CPT0094550002 CPT0094550002.WholeExome.RP-1303.bam 31367577695 BAM aligned CPTAC3 f432852c-1f80-490f-bc25-6430d2dbc962 250f7b91606d02acd1f00aab1766662b {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01339.WXS.N.hg38 C3N-01339 HNSCC WXS blood_normal CPT0094550002 4b2e3dab-1455-429e-b205-85434e5e888c_wxs_gdc_realn.bam 42357210689 BAM harmonized CPTAC3 d5f94d9e-7254-4e28-93f2-bd242896d2db 7a02a20c4a3365004e8ad3d920800119 {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01339.WXS.T C3N-01339 HNSCC WXS tumor CPT0094490010 CPT0094490010.WholeExome.RP-1303.bam 41966374414 BAM aligned CPTAC3 2b0d91df-c70f-416f-a93f-c14eb589a147 113de241c8b54c639cf8f6861a18afaf {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor"} -C3N-01339.WXS.T.hg38 C3N-01339 HNSCC WXS tumor CPT0094490010 1e614b7c-3b45-455f-8314-99d4e3dc91fa_wxs_gdc_realn.bam 57280808078 BAM harmonized CPTAC3 33014bf0-de1f-4524-9f4e-d897b60839db c99d390c1bd657ead945ae08575748b1 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor"} -C3N-01340.MethArray.Green.T C3N-01340 HNSCC Methylation_Array tumor CPT0094560007 203273200073_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1ddbb581-9cb4-451d-8e75-f5a956bc9c40 11aea697f506f2dc7fc8ef26b96921e1 {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor"} -C3N-01340.MethArray.Red.T C3N-01340 HNSCC Methylation_Array tumor CPT0094560007 203273200073_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 3a755939-a6d8-4990-9ae0-2a491df79642 34bfd19b6c31097482bd2c58be0e11c7 {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor"} -C3N-01340.miRNA-Seq.A.hg38 C3N-01340 HNSCC miRNA-Seq tissue_normal CPT0094580006 d6deeb34-a86d-4099-b3af-1e033a286c40_mirnaseq_gdc_realn.bam 257230535 BAM harmonized CPTAC3 19c1f850-7f31-4775-8512-54b3167f7d78 b65642453af798b0720a72df4611eafd {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01340.miRNA-Seq.S11_L001_R1.A C3N-01340 HNSCC miRNA-Seq tissue_normal CPT0094580006 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L001_R1_001.unaln.bam 230499922 BAM S11_L001_R1 unaligned CPTAC3 62e758db-19d8-4022-b168-739c05c98e78 613b5683cf3f3da777e2db1afa46ad4b {"aliquot_tag": "ALQ_7a191fb2", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01340.miRNA-Seq.S5_L001_R1.T C3N-01340 HNSCC miRNA-Seq tumor CPT0094560010 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L001_R1_001.unaln.bam 236979318 BAM S5_L001_R1 unaligned CPTAC3 c058532d-676e-47ae-9d9b-f504060344b3 b9f1c1aa07e142da935680bb0f13f8d7 {"aliquot_tag": "ALQ_355135a7", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01340.miRNA-Seq.T.hg38 C3N-01340 HNSCC miRNA-Seq tumor CPT0094560010 092346de-1de4-4b5b-ab6d-8ade032e45c3_mirnaseq_gdc_realn.bam 257946927 BAM harmonized CPTAC3 ef7cdf3a-6305-414b-a3f1-c596e78cbebc df91153d54b1908d56be4bde539078f7 {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor"} -C3N-01340.RNA-Seq.chimeric.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.chimeric.gdc_realn.bam 264796781 BAM chimeric harmonized CPTAC3 ae92f91d-cd12-4b7d-ad80-fea6cf4e8666 ab1d409979f20e7b3e495e160cd95d95 {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01340.RNA-Seq.chimeric.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.chimeric.gdc_realn.bam 242562339 BAM chimeric harmonized CPTAC3 555cd108-8b85-431f-8693-20d64df8d2da 4a05040a2cd854ae216462cacaf12fac {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor"} -C3N-01340.RNA-Seq.genomic.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.genomic.gdc_realn.bam 7970500321 BAM genomic harmonized CPTAC3 5b19bcb8-b5a2-4979-801e-3234c34bbab2 f9ffdda9651e042d4af9338dfe543fee {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01340.RNA-Seq.genomic.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.genomic.gdc_realn.bam 7334324683 BAM genomic harmonized CPTAC3 e68e2df9-1077-4b3d-bed0-fc0cd63fabe0 126ccc4be742822a99f8a3f4ac2e9196 {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor"} -C3N-01340.RNA-Seq.S10_L003_R1.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3595538230 FASTQ S10_L003_R1 unaligned CPTAC3 8f2054cf-f6ab-4c9f-98a4-5e1c95ce1b2b 4815092e49e2ec657b7eeb7bc80df09b {"aliquot_tag": "ALQ_7a191fb2", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01340.RNA-Seq.S10_L003_R2.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4099942149 FASTQ S10_L003_R2 unaligned CPTAC3 8db1bf52-ab44-4d3a-82cd-c265950b4a9d 1dccbad693fea02841141c310f7a7e3c {"aliquot_tag": "ALQ_7a191fb2", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01340.RNA-Seq.S5_L002_R1.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3258123878 FASTQ S5_L002_R1 unaligned CPTAC3 0f4b80f9-5b69-4ea2-be2f-4c748c8d1ee5 d66a7b1ef0ac32d45a78cc921dad356c {"aliquot_tag": "ALQ_355135a7", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01340.RNA-Seq.S5_L002_R2.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 3613851437 FASTQ S5_L002_R2 unaligned CPTAC3 4f6f6cf6-20b6-40b2-97c3-bfc6bad96682 897c1432c2eb05ba537c0b83a770e29e {"aliquot_tag": "ALQ_355135a7", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01340.RNA-Seq.transcriptome.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.transcriptome.gdc_realn.bam 10413987936 BAM transcriptome harmonized CPTAC3 e61042ce-d0a9-4db9-8a28-595f9aeeee66 3c62a0fd2d67067657b301d47b068f48 {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01340.RNA-Seq.transcriptome.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.transcriptome.gdc_realn.bam 8860928984 BAM transcriptome harmonized CPTAC3 0d864e06-339f-43de-976b-c663922c755d 047bf2a42ec560c6d8650ff93f3b3bda {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor"} -C3N-01340.WGS.N C3N-01340 HNSCC WGS blood_normal CPT0094620002 CPT0094620002.WholeGenome.RP-1303.bam 60287897320 BAM aligned CPTAC3 61872ecc-345c-441c-b4e4-1319ba3eed5e 84a557ad6dee51723d4fb2e769e91f61 {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01340.WGS.N.hg38 C3N-01340 HNSCC WGS blood_normal CPT0094620002 596baa98-86ae-490f-be66-13b062e87107_wgs_gdc_realn.bam 88571699040 BAM harmonized CPTAC3 f4155561-aaa4-4806-918b-2b4240d3410e 3872100d7f9fe9f1b7e7a50473d91fdd {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01340.WGS.T C3N-01340 HNSCC WGS tumor CPT0094560007 CPT0094560007.WholeGenome.RP-1303.bam 60616240562 BAM aligned CPTAC3 9825f542-218e-4879-bccd-9e68e90be523 9cb79e20f573ef2fb8f8ebc67c4e9b8f {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor"} -C3N-01340.WGS.T.hg38 C3N-01340 HNSCC WGS tumor CPT0094560007 f9710d5a-c4bb-4b00-b946-703963bd8232_wgs_gdc_realn.bam 87673403751 BAM harmonized CPTAC3 f1b4e15b-0938-481a-99a3-f7cfd6721343 ae3484863c39a8f4d6d8b9a2e15bcc41 {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor"} -C3N-01340.WXS.N C3N-01340 HNSCC WXS blood_normal CPT0094620002 CPT0094620002.WholeExome.RP-1303.bam 30133918608 BAM aligned CPTAC3 4763cd37-5f28-4808-9274-d7c008133817 1a805ee3e219ebb8e4998e59e9113887 {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01340.WXS.N.hg38 C3N-01340 HNSCC WXS blood_normal CPT0094620002 596baa98-86ae-490f-be66-13b062e87107_wxs_gdc_realn.bam 40213635110 BAM harmonized CPTAC3 dbc346b9-3868-4558-9ec6-2fa320defc10 f9a0c29561bd2ae862fa0936180a8152 {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01340.WXS.T C3N-01340 HNSCC WXS tumor CPT0094560007 CPT0094560007.WholeExome.RP-1303.bam 21592815753 BAM aligned CPTAC3 ab74fcb9-c523-4eaf-9d8f-521391cf94fd 4a2dcc463bee6d83fd13cf5b27ec80ec {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor"} -C3N-01340.WXS.T.hg38 C3N-01340 HNSCC WXS tumor CPT0094560007 f9710d5a-c4bb-4b00-b946-703963bd8232_wxs_gdc_realn.bam 30457402803 BAM harmonized CPTAC3 46c4dbb4-8011-4b04-94cd-00bf725f0fbd 95290976a95f6c19c98654dbb1390aee {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor"} -C3N-01341.MethArray.Green.T C3N-01341 UCEC Methylation_Array tumor CPT0095280009 202234380099_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 84d58a64-00ed-49f7-a883-f2a0149f85c2 b4877c02186b6b7a0e26338bef0a60e5 {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor"} -C3N-01341.MethArray.Red.T C3N-01341 UCEC Methylation_Array tumor CPT0095280009 202234380099_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 891aed95-1da4-49a8-b3c2-bc7b16e54940 07147ea4acef00505b0cb64710340690 {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor"} -C3N-01341.miRNA-Seq.S47_L007_R1.T C3N-01341 UCEC miRNA-Seq tumor CPT0095280006 180828_UNC32-K00270_0112_AHWTLNBBXX_GACGAC_S47_L007_R1_001.unaln.bam 236568056 BAM S47_L007_R1 unaligned CPTAC3 721d8023-0074-4b11-9c54-c06a6c21d738 fa76f775cc0012e9fb6a17f125fb423d {"aliquot_tag": "ALQ_c16b24be", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01341.miRNA-Seq.T.hg38 C3N-01341 UCEC miRNA-Seq tumor CPT0095280006 8ea25dab-d3b4-4d1b-913f-081255ae905b_mirnaseq_gdc_realn.bam 268088034 BAM harmonized CPTAC3 5b4a97a2-23ee-4005-867f-7013a932820b 3eae6b693ab7d4ee0a30f8b3d33fc72c {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.chimeric.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.chimeric.gdc_realn.bam 34399903 BAM chimeric harmonized CPTAC3 03d105c1-98a7-448d-8067-69da79c3e9cc e1ff52e174667eed5e29e63aeee2cc9d {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.chimeric.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.chimeric.gdc_realn.bam 179374267 BAM chimeric harmonized CPTAC3 6fec07f3-3527-405f-ba13-6840d25fa902 bdbdc45822c72a826b166b267f05ef87 {"aliquot_tag": "ALQ_8606232b", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.genomic.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.genomic.gdc_realn.bam 8744525964 BAM genomic harmonized CPTAC3 84d69687-508c-47ec-9a52-b93a3b372b89 88e1481ce0ccfe98758318bdc9a06611 {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.genomic.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.genomic.gdc_realn.bam 8142416728 BAM genomic harmonized CPTAC3 a3582b04-4408-480b-9747-3757549c9621 3823393cd1caba43d1a6bd8a906783d9 {"aliquot_tag": "ALQ_8606232b", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.S5_R1.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R1_001.fastq.gz 4892694742 FASTQ S5_R1 unaligned CPTAC3 574651b1-5a29-46a0-8426-bc2847b406b2 4c2dd3cce52dc89539b73099b7b09d96 {"aliquot_tag": "ALQ_8606232b", "sample": "S5", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.S5_R2.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R2_001.fastq.gz 5107520532 FASTQ S5_R2 unaligned CPTAC3 834e4efa-7bf9-4d32-bb84-35685982a92e 4458b31047a46c40b0c244d91f0a68a2 {"aliquot_tag": "ALQ_8606232b", "sample": "S5", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.S7_L008_R1.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R1_001.fastq.gz 4375979214 FASTQ S7_L008_R1 unaligned CPTAC3 235d5a77-136b-493b-8701-7f842a4394ff 8ce698a804bebec2c8dc63191d4c7b3d {"aliquot_tag": "ALQ_c16b24be", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.S7_L008_R2.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R2_001.fastq.gz 4726788363 FASTQ S7_L008_R2 unaligned CPTAC3 bebef409-9736-49b2-b3d6-4f504b370e21 4de08d3ad5c2a67d0907326b2c41fec5 {"aliquot_tag": "ALQ_c16b24be", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.transcriptome.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.transcriptome.gdc_realn.bam 11874644003 BAM transcriptome harmonized CPTAC3 a6ff538a-3939-4798-866d-8f3307f9f4dd c6c2a13906c824ba0389bfc317e9f155 {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor"} -C3N-01341.RNA-Seq.transcriptome.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.transcriptome.gdc_realn.bam 3764831648 BAM transcriptome harmonized CPTAC3 47733b9b-2dc9-4789-8d59-51ba0dad55ea b99668ccdcdac8d281063b8474cf07bb {"aliquot_tag": "ALQ_8606232b", "gdc_sample_type": "Primary Tumor"} -C3N-01341.WGS.N C3N-01341 UCEC WGS blood_normal CPT0095300002 CPT0095300002.WholeGenome.RP-1303.bam 55556717642 BAM aligned CPTAC3 53ac1b4c-87c1-4f7c-90ce-e752bc79d88e fbf30ad5484ba40b17d5b03e1a3a20c7 {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01341.WGS.N.hg38 C3N-01341 UCEC WGS blood_normal CPT0095300002 51ed66a7-3a92-459f-ad86-ef990fa69bd7_wgs_gdc_realn.bam 82441890092 BAM harmonized CPTAC3 0d40e5ec-09dc-49e5-8e4d-b89804ce3731 b8c7ab42e432cef08981926db7019408 {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01341.WGS.T C3N-01341 UCEC WGS tumor CPT0095280009 CPT0095280009.WholeGenome.RP-1303.bam 67136736595 BAM aligned CPTAC3 0b74d6a8-dbd8-4c2c-a0c4-b040ed1f0d5a 68361d6be81d8951bfe0a4c566db173f {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor"} -C3N-01341.WGS.T.hg38 C3N-01341 UCEC WGS tumor CPT0095280009 2381c027-385f-4732-ac4c-90eb375883ca_wgs_gdc_realn.bam 98846305528 BAM harmonized CPTAC3 3ffceba3-744d-4974-9d43-7365de3ce446 b13f5e4e3372828ed6aa6ac04ad079c3 {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor"} -C3N-01341.WXS.N C3N-01341 UCEC WXS blood_normal CPT0095300002 CPT0095300002.WholeExome.RP-1303.bam 34718511074 BAM aligned CPTAC3 169ae9bc-168f-4364-8982-3215945ae5a6 42ee452eb8cf7ce22f5b275d95b1d9bd {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01341.WXS.N.hg38 C3N-01341 UCEC WXS blood_normal CPT0095300002 51ed66a7-3a92-459f-ad86-ef990fa69bd7_wxs_gdc_realn.bam 47684691773 BAM harmonized CPTAC3 f0e114ad-b414-429c-bbb6-7d35aa4867ff 1b79c40007af30af91d2ac4a752bc050 {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01341.WXS.T C3N-01341 UCEC WXS tumor CPT0095280009 CPT0095280009.WholeExome.RP-1303.bam 32844094808 BAM aligned CPTAC3 a9b51eeb-f667-4c55-ab2e-5d3179385ab5 7bcd7ef994f328ecbc56fd2cb74c2add {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor"} -C3N-01341.WXS.T.hg38 C3N-01341 UCEC WXS tumor CPT0095280009 2381c027-385f-4732-ac4c-90eb375883ca_wxs_gdc_realn.bam 44840568350 BAM harmonized CPTAC3 cde64e51-cf27-401f-9a4f-c26d2e251283 574b34527a78a031cafdc5588e4d01bf {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor"} -C3N-01342.MethArray.Green.T C3N-01342 UCEC Methylation_Array tumor CPT0088140009 202178770006_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 96d3513d-e5f6-4f78-bf02-e72772ea022c 2311bbd9056b57fdf782abe723e585ca {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor"} -C3N-01342.MethArray.Red.T C3N-01342 UCEC Methylation_Array tumor CPT0088140009 202178770006_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 dd74d2e3-e4a6-41c9-918c-aa33602eee66 821835b5b0a945afa6a6a6ffec49d5ef {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor"} -C3N-01342.miRNA-Seq.S8_L008_R1.T C3N-01342 UCEC miRNA-Seq tumor CPT0088140006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L008_R1_001.unaln.bam 163630286 BAM S8_L008_R1 unaligned CPTAC3 1c0ebe4c-4de4-4307-8a19-92396cd8712f 0b35bfe3099bc823847ee8b0f9afd5ef {"aliquot_tag": "ALQ_2f72da4f", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01342.miRNA-Seq.T.hg38 C3N-01342 UCEC miRNA-Seq tumor CPT0088140006 8e30b22d-3e6b-4694-97fe-983b60ecb7cd_mirnaseq_gdc_realn.bam 182133218 BAM harmonized CPTAC3 ebe1de59-e6ba-4554-a47b-d762da2aef66 507a3444b2a4e726a250445d223a94f4 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.chimeric.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.chimeric.gdc_realn.bam 32098278 BAM chimeric harmonized CPTAC3 ddd9161d-0b5c-42f0-ab0f-f2b01234f2c4 c3cc1ab4c80e5a33cf5de741171366e8 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.chimeric.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.chimeric.gdc_realn.bam 242434962 BAM chimeric harmonized CPTAC3 5f1c9b6f-d7b2-41a9-8d8f-548277143233 bd4bf752c4452ca2ed144047f037dab2 {"aliquot_tag": "ALQ_fcc6704b", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.genomic.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.genomic.gdc_realn.bam 8860519598 BAM genomic harmonized CPTAC3 0211cb27-4b7f-4b7d-8e66-79d15c6c1aaf 4b7d8f29c98d79d288611f9e487114b8 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.genomic.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.genomic.gdc_realn.bam 10637180413 BAM genomic harmonized CPTAC3 ebd9a848-e1e8-4ae1-9d36-714352b83b91 4886373e453f6d747d86318e04be9a87 {"aliquot_tag": "ALQ_fcc6704b", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.S1_L001_R1.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4233820853 FASTQ S1_L001_R1 unaligned CPTAC3 db49aa38-848e-4196-aa4c-bad8fdc9692f c14ce93d33b1173bdbf2edaf836ef452 {"aliquot_tag": "ALQ_2f72da4f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.S1_L001_R2.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4755674091 FASTQ S1_L001_R2 unaligned CPTAC3 d617ecc2-eae5-4cbe-a806-f74effc0b0ad 69accc4aef8c857a0e586d6e92a25032 {"aliquot_tag": "ALQ_2f72da4f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.S87_R1.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R1_001.fastq.gz 6595624111 FASTQ S87_R1 unaligned CPTAC3 7db1340c-3d27-4343-b688-2ec1165435fc d84cc0d8f2e1bfe224b396e3e2c8f632 {"aliquot_tag": "ALQ_fcc6704b", "sample": "S87", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.S87_R2.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R2_001.fastq.gz 6870942105 FASTQ S87_R2 unaligned CPTAC3 e26318b0-5bd8-40f4-8b79-4126ef228eee bc0e5d4da1a096e87605f8cc1f97d8ca {"aliquot_tag": "ALQ_fcc6704b", "sample": "S87", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.transcriptome.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.transcriptome.gdc_realn.bam 12420669315 BAM transcriptome harmonized CPTAC3 14a6bc31-7e89-42bc-aca0-4f9a4435db96 8ac0f01252a30de0be0582e9564cc3a0 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor"} -C3N-01342.RNA-Seq.transcriptome.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.transcriptome.gdc_realn.bam 5045320309 BAM transcriptome harmonized CPTAC3 33554b3b-4a6d-4dc4-8331-dcf5dceb0684 98af3d5844e218e1e8fcfd91e11732a9 {"aliquot_tag": "ALQ_fcc6704b", "gdc_sample_type": "Primary Tumor"} -C3N-01342.WGS.N C3N-01342 UCEC WGS blood_normal CPT0088170002 CPT0088170002.WholeGenome.RP-1303.bam 70245723844 BAM aligned CPTAC3 7d6e4ddb-df25-4029-9242-cbec066667e5 807a16b9b095c38423b1f463540b63ff {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal"} -C3N-01342.WGS.N.hg38 C3N-01342 UCEC WGS blood_normal CPT0088170002 34c0a262-8e89-4e5a-9b3f-562178463514_gdc_realn.bam 106409010851 BAM harmonized CPTAC3 9c5e7c89-800c-43bf-b746-c0ca213c1d50 d9e21e4e276cfe797e45f5f0baeffb00 {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal"} -C3N-01342.WGS.T C3N-01342 UCEC WGS tumor CPT0088140009 CPT0088140009.WholeGenome.RP-1303.bam 67228515696 BAM aligned CPTAC3 eaf78e58-9581-4e83-84cb-793ce9ca926a ee0d1ef4d904261a266c63e6815d2f52 {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor"} -C3N-01342.WGS.T.hg38 C3N-01342 UCEC WGS tumor CPT0088140009 76064c3b-7b99-4673-827f-1ac70735b23c_gdc_realn.bam 101364481725 BAM harmonized CPTAC3 8a6d577e-1178-4231-a732-793711d34495 315942e62b18e5745486f6c4f49a9c71 {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor"} -C3N-01342.WXS.N C3N-01342 UCEC WXS blood_normal CPT0088170002 CPT0088170002.WholeExome.RP-1303.bam 27540443181 BAM aligned CPTAC3 0dd03f5d-18e7-466e-9cc1-cce887a3f2e5 bad403268cad4afe0c97b8c7a657e6fc {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal"} -C3N-01342.WXS.N.hg38 C3N-01342 UCEC WXS blood_normal CPT0088170002 34c0a262-8e89-4e5a-9b3f-562178463514_gdc_realn.bam 37451859794 BAM harmonized CPTAC3 caced7d4-d5ac-4b37-bc8f-3576554ac0fc 43d937adc213d0e653339e7fff6fe3b4 {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal"} -C3N-01342.WXS.T C3N-01342 UCEC WXS tumor CPT0088140009 CPT0088140009.WholeExome.RP-1303.bam 25946783357 BAM aligned CPTAC3 dfcbb888-875c-4c1b-9a57-822338abc392 1592f5d5e538916790fdb3ee129211ff {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor"} -C3N-01342.WXS.T.hg38 C3N-01342 UCEC WXS tumor CPT0088140009 76064c3b-7b99-4673-827f-1ac70735b23c_gdc_realn.bam 36017580837 BAM harmonized CPTAC3 eaaa9752-8535-40b0-8836-6774cdaaae9b db8b521ed808fd88d277b3843b7e7e9f {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor"} -C3N-01344.MethArray.Green.T C3N-01344 UCEC Methylation_Array tumor CPT0116340007 203219760065_R02C01_Grn.idat 13676230 IDAT Green NA CPTAC3 b21c5460-73e4-4572-a27c-12f11604fad9 4927ee7eda04745c87661402cf627fa6 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor"} -C3N-01344.MethArray.Red.T C3N-01344 UCEC Methylation_Array tumor CPT0116340007 203219760065_R02C01_Red.idat 13676230 IDAT Red NA CPTAC3 d86cb728-8ad6-48ea-98f1-3f2b51a4cb96 87361e9a0c550605a04a767b36fc02ea {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor"} -C3N-01344.miRNA-Seq.A.hg38 C3N-01344 UCEC miRNA-Seq tissue_normal CPT0116450009 b34190a6-a785-480b-bee9-5f3ca67b04df_mirnaseq_gdc_realn.bam 192283298 BAM harmonized CPTAC3 7efef1f6-750c-42c8-8dbc-57eb6c0a96e1 bbe591330abe68fd8e53e63d90843771 {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.miRNA-Seq.S44_L003_R1.A C3N-01344 UCEC miRNA-Seq tissue_normal CPT0116450009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L003_R1_001.unaln.bam 172288623 BAM S44_L003_R1 unaligned CPTAC3 038f2766-5102-43c7-b34a-6ea50e549931 4b7cb79a7dd3ffe5142bab7c1affe543 {"aliquot_tag": "ALQ_8a6b0be8", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.miRNA-Seq.S45_L003_R1.T C3N-01344 UCEC miRNA-Seq tumor CPT0116340010 190108_UNC31-K00269_0176_AHYGLVBBXX_TCATTC_S45_L003_R1_001.unaln.bam 236362337 BAM S45_L003_R1 unaligned CPTAC3 20154c43-b31c-44bd-88dc-f432bdded793 e6b235a3a3d14b868c3c928ff26cce40 {"aliquot_tag": "ALQ_cac99b05", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01344.miRNA-Seq.T.hg38 C3N-01344 UCEC miRNA-Seq tumor CPT0116340010 067bfd9e-f722-4b1f-887e-40eac88cb4eb_mirnaseq_gdc_realn.bam 260617130 BAM harmonized CPTAC3 e8d491f7-869f-48a1-95d7-03de57431235 ad1cf5598fce7fe232db4bcadd323482 {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.chimeric.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.chimeric.gdc_realn.bam 34289602 BAM chimeric harmonized CPTAC3 7bc55348-8d40-4665-8446-1f83d18dc1fb f39cf8afed4499aa5cf8bc35ad8935af {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.RNA-Seq.chimeric.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.chimeric.gdc_realn.bam 33563209 BAM chimeric harmonized CPTAC3 bdab93ca-86dd-43df-b41e-e0639e32059e e1f28032b38fc8dd7f8654127ace0d17 {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.chimeric.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.chimeric.gdc_realn.bam 10853187 BAM chimeric harmonized CPTAC3 7c565f6e-d73c-4811-af8b-743f0cf032c0 c046a045bcfd33df24fbe4a065dd34cd {"aliquot_tag": "ALQ_c1a659fb", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.genomic.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.genomic.gdc_realn.bam 8824683659 BAM genomic harmonized CPTAC3 a6a87000-389a-4b2e-9fc5-5e7783444640 aab4e50e884f4017dfa57207061d83bd {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.RNA-Seq.genomic.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.genomic.gdc_realn.bam 9068020251 BAM genomic harmonized CPTAC3 1b008801-6ef1-458c-9355-f4c7b794635a 333b417bb754e17f11295fba497416fd {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.genomic.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.genomic.gdc_realn.bam 3446400743 BAM genomic harmonized CPTAC3 be86e2ff-af0c-4bb2-bb18-5a1b3f882b5f 1e0529bd2efd79292ccffd6048483aa2 {"aliquot_tag": "ALQ_c1a659fb", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.S19_L007_R1.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R1_001.fastq.gz 4190146073 FASTQ S19_L007_R1 unaligned CPTAC3 6c279227-c3ea-429b-8f27-999e61e49213 3294aa0c3a68d7b9803d5ad238c28b9c {"aliquot_tag": "ALQ_cac99b05", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.S19_L007_R2.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R2_001.fastq.gz 4442762871 FASTQ S19_L007_R2 unaligned CPTAC3 6b92fce0-bf2f-4f35-ac1a-b5e15559788d 7289996e7835ceaec23a880ff0c078da {"aliquot_tag": "ALQ_cac99b05", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.S4_L005_R1.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3940056211 FASTQ S4_L005_R1 unaligned CPTAC3 e3d24a9d-b91b-448f-b4d7-585e2078ac58 3a392c78be596c1865e15220f17462ee {"aliquot_tag": "ALQ_8a6b0be8", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.RNA-Seq.S4_L005_R2.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 4416845317 FASTQ S4_L005_R2 unaligned CPTAC3 147ef354-4b8e-4ca4-9203-ca115de6f3ad ec3baf4082bad7ff844402dc22cff080 {"aliquot_tag": "ALQ_8a6b0be8", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.RNA-Seq.S72_R1.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R1_001.fastq.gz 1846518862 FASTQ S72_R1 unaligned CPTAC3 d10e3e04-1e75-4601-aca5-1ca201432a1a 7250f8d3da7bd08e90af9d59860c5435 {"aliquot_tag": "ALQ_c1a659fb", "sample": "S72", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.S72_R2.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R2_001.fastq.gz 2043043260 FASTQ S72_R2 unaligned CPTAC3 b094184c-2b14-43f0-8693-1ad718349f18 35d8c27e438008115db6df73f5a5686c {"aliquot_tag": "ALQ_c1a659fb", "sample": "S72", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.transcriptome.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.transcriptome.gdc_realn.bam 11181324536 BAM transcriptome harmonized CPTAC3 ef37908e-1149-43d7-b316-3d271ec614dc 6a28d291784488a110484b9d4aa3f053 {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.RNA-Seq.transcriptome.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.transcriptome.gdc_realn.bam 11115478718 BAM transcriptome harmonized CPTAC3 44478569-f9a7-45fb-847f-15212a0a685d 0b7d823b29ff0cb161cfc8eef3b76aa2 {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor"} -C3N-01344.RNA-Seq.transcriptome.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.transcriptome.gdc_realn.bam 3184053141 BAM transcriptome harmonized CPTAC3 5d8f97c6-2308-4955-8485-1a598b3c3165 4ca4f12e51661103686a240f23736a3e {"aliquot_tag": "ALQ_c1a659fb", "gdc_sample_type": "Primary Tumor"} -C3N-01344.WGS.A C3N-01344 UCEC WGS tissue_normal CPT0116450006 CPT0116450006.WholeGenome.RP-1303.bam 67056645980 BAM aligned CPTAC3 8c7e13fb-b439-4358-9ea6-282144770238 575d4477b06b37776b16236a8728573e {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.WGS.A.hg38 C3N-01344 UCEC WGS tissue_normal CPT0116450006 e116178e-8092-4784-b1a3-f9b5fa31fd02_wgs_gdc_realn.bam 98478461965 BAM harmonized CPTAC3 d0ca7041-a1d7-4b29-adb9-1588fe8aa27b 0f66ae36c9f9ef802a096683ad41ec41 {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.WGS.N C3N-01344 UCEC WGS blood_normal CPT0116540002 CPT0116540002.WholeGenome.RP-1303.bam 79449703152 BAM aligned CPTAC3 0f13cf0e-3fd3-457d-99a1-a5ea0dfe1829 20ac368c0cf6e95f06045b5833d29bc9 {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal"} -C3N-01344.WGS.N.hg38 C3N-01344 UCEC WGS blood_normal CPT0116540002 c95a75ae-c3f0-4f79-bfa2-33a400d6d622_wgs_gdc_realn.bam 114404683360 BAM harmonized CPTAC3 d698f6a0-1455-405f-83e8-08b9f833dd10 36fdd1d3c29517bae350ab6e1e5441b7 {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal"} -C3N-01344.WGS.T C3N-01344 UCEC WGS tumor CPT0116340007 CPT0116340007.WholeGenome.RP-1303.bam 60753331025 BAM aligned CPTAC3 39f7534e-255e-4f7b-a43e-8bd786cc4abe 74a62ae7472a1db0304712d59bfa4937 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor"} -C3N-01344.WGS.T.hg38 C3N-01344 UCEC WGS tumor CPT0116340007 39d728d7-3b5b-4b15-9c73-fd9714c9283c_wgs_gdc_realn.bam 91135213092 BAM harmonized CPTAC3 766b8cfa-e2c4-448b-9440-aa7335aca50f c6daaa5b1ce303131fb2bca9d67fcc51 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor"} -C3N-01344.WXS.A C3N-01344 UCEC WXS tissue_normal CPT0116450006 CPT0116450006.WholeExome.RP-1303.bam 26447638777 BAM aligned CPTAC3 c576b234-b9ef-4565-904c-71d9626f8b28 57a5f1e07a1130bef4cf0e7b36bb540c {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.WXS.A.hg38 C3N-01344 UCEC WXS tissue_normal CPT0116450006 e116178e-8092-4784-b1a3-f9b5fa31fd02_wxs_gdc_realn.bam 36974407346 BAM harmonized CPTAC3 06ade7d9-ac37-468a-b55f-064a589f6023 69572658814b88efedc248a125fdbb54 {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01344.WXS.N C3N-01344 UCEC WXS blood_normal CPT0116540002 CPT0116540002.WholeExome.RP-1303.bam 27290653199 BAM aligned CPTAC3 6314bbad-7ddc-48ee-a1fd-7ab040287066 565101627acfc84607999a4da0534cf7 {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal"} -C3N-01344.WXS.N.hg38 C3N-01344 UCEC WXS blood_normal CPT0116540002 c95a75ae-c3f0-4f79-bfa2-33a400d6d622_wxs_gdc_realn.bam 38000490816 BAM harmonized CPTAC3 15b50115-41aa-4a9c-9011-fddc7a2ba9dd 4e91d7a7aa0941b7953ad4302e34158f {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal"} -C3N-01344.WXS.T C3N-01344 UCEC WXS tumor CPT0116340007 CPT0116340007.WholeExome.RP-1303.bam 25572776908 BAM aligned CPTAC3 d35fbf19-d4d7-4300-99af-6b762b6404e6 56a11d2cfb6f56a1f5f6cd521e10cb69 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor"} -C3N-01344.WXS.T.hg38 C3N-01344 UCEC WXS tumor CPT0116340007 39d728d7-3b5b-4b15-9c73-fd9714c9283c_wxs_gdc_realn.bam 35185700312 BAM harmonized CPTAC3 554a3124-df16-483e-b4cd-efa9f26c8270 5dd6f07504e228838d9045bedaf2f218 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor"} -C3N-01346.MethArray.Green.T C3N-01346 UCEC Methylation_Array tumor CPT0116550007 203219650169_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c4dbe072-b498-4988-b848-e362fe591bc9 0e79e88086e77c249e0464ce3d33d7e5 {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor"} -C3N-01346.MethArray.Red.T C3N-01346 UCEC Methylation_Array tumor CPT0116550007 203219650169_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 515f2280-7763-42d3-9512-f7a44f7ddeff 4b1fba93139fa724e3e68a63964535ed {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor"} -C3N-01346.miRNA-Seq.A.hg38 C3N-01346 UCEC miRNA-Seq tissue_normal CPT0116570009 37a85145-2dc8-48a1-a7ad-f046d051657b_mirnaseq_gdc_realn.bam 312355863 BAM harmonized CPTAC3 bfa31e9a-8460-484c-bad6-d12999eaccdc c00e2e185240a3d8ac88c5bd2ba3f287 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.miRNA-Seq.S21_L001_R1.A C3N-01346 UCEC miRNA-Seq tissue_normal CPT0116570009 181119_UNC31-K00269_0165_AH27WCBBXY_TCATTC_S21_L001_R1_001.unaln.bam 269964627 BAM S21_L001_R1 unaligned CPTAC3 d40905cf-35b6-43a6-969d-7443041c33c8 f857d94c6af04ac38be48a5dbe333c2d {"aliquot_tag": "ALQ_3bf78b2d", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.miRNA-Seq.S31_L002_R1.T C3N-01346 UCEC miRNA-Seq tumor CPT0116550010 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L002_R1_001.unaln.bam 173984982 BAM S31_L002_R1 unaligned CPTAC3 25abb93d-4661-43c2-b088-87b2ee29b853 e93e56a0355323622871f6837fec8e58 {"aliquot_tag": "ALQ_21f051a8", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01346.miRNA-Seq.T.hg38 C3N-01346 UCEC miRNA-Seq tumor CPT0116550010 72d8c63b-7b55-423b-ab0d-d8662bcc1ee4_mirnaseq_gdc_realn.bam 191271842 BAM harmonized CPTAC3 cde54208-bf04-4e3c-a7dd-e559c0647580 e32485c08881a79a938f791f74c6fa4a {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor"} -C3N-01346.RNA-Seq.chimeric.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.chimeric.gdc_realn.bam 36921896 BAM chimeric harmonized CPTAC3 26dea4b4-2927-42c0-92e0-fa86fbe9675c 1a355b85297f2ca774d33b842208e634 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.RNA-Seq.chimeric.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.chimeric.gdc_realn.bam 144942070 BAM chimeric harmonized CPTAC3 d41198c0-0f11-44a0-8bcf-3cea2dc2bef5 78e3bc31a7d159eb01900f93efc5f229 {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor"} -C3N-01346.RNA-Seq.genomic.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.genomic.gdc_realn.bam 9206674981 BAM genomic harmonized CPTAC3 dfad510b-6499-45ed-b153-48c5b7adb350 986d5ef9065704996b284296dfd89716 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.RNA-Seq.genomic.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.genomic.gdc_realn.bam 9672996414 BAM genomic harmonized CPTAC3 66257f21-ca50-4336-9ebf-9f600f561b58 d96841e8d4877973a65556cf4634be0c {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor"} -C3N-01346.RNA-Seq.S11_L003_R1.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R1_001.fastq.gz 4055631261 FASTQ S11_L003_R1 unaligned CPTAC3 e471cc71-0f0b-421b-a1fb-40136d957698 f4012ff6174a3cbad492d64357af63e1 {"aliquot_tag": "ALQ_21f051a8", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01346.RNA-Seq.S11_L003_R2.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R2_001.fastq.gz 4376754718 FASTQ S11_L003_R2 unaligned CPTAC3 05f8cd15-4e8b-4bc0-abb9-86024f30587e 9332afa7fe0a9876b8bd24935f401456 {"aliquot_tag": "ALQ_21f051a8", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01346.RNA-Seq.S5_L008_R1.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R1_001.fastq.gz 4017938022 FASTQ S5_L008_R1 unaligned CPTAC3 7f559a17-edd2-4465-aee8-61684540c52e d6c53ff4d39721d31f65200c02147dc2 {"aliquot_tag": "ALQ_3bf78b2d", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.RNA-Seq.S5_L008_R2.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4469894731 FASTQ S5_L008_R2 unaligned CPTAC3 a2d046e8-2efb-4587-8ac7-fb8e6e340b40 5dc381c6ca29b04ea32f11d3eb4bc297 {"aliquot_tag": "ALQ_3bf78b2d", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.RNA-Seq.transcriptome.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.transcriptome.gdc_realn.bam 11314507147 BAM transcriptome harmonized CPTAC3 3b647cc5-7d27-4d0c-bbff-92249606e922 379a069520ad0e428dd12e8057462782 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.RNA-Seq.transcriptome.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.transcriptome.gdc_realn.bam 9730008462 BAM transcriptome harmonized CPTAC3 493f70d1-06d1-49d6-88c1-2e9b03d8892a 4b5819cbe0a6b928444cd009252663a9 {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor"} -C3N-01346.WGS.A C3N-01346 UCEC WGS tissue_normal CPT0116570006 CPT0116570006.WholeGenome.RP-1303.bam 63203695291 BAM aligned CPTAC3 e231bc3c-8a0b-4f87-ac85-cf587137af57 4677c66d04373eb426ac36a112d97a18 {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.WGS.A.hg38 C3N-01346 UCEC WGS tissue_normal CPT0116570006 d32a4900-85bb-4bc2-9700-97bf3f5cdb30_wgs_gdc_realn.bam 92975001762 BAM harmonized CPTAC3 4a6aa601-aadd-44b2-8753-ea0c52793c77 ff928fab098c313b6275f8fca1d6c38c {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.WGS.N C3N-01346 UCEC WGS blood_normal CPT0116610002 CPT0116610002.WholeGenome.RP-1303.bam 63027333099 BAM aligned CPTAC3 4653a8b0-a664-4805-9186-879bd520b70f ac21c35fc67fe84a68ca5719af254dde {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal"} -C3N-01346.WGS.N.hg38 C3N-01346 UCEC WGS blood_normal CPT0116610002 3db17e2b-7fc3-4dc1-9fa9-e0859db32a3e_wgs_gdc_realn.bam 93829055269 BAM harmonized CPTAC3 0149a1bf-30e0-41c3-994d-70bb82818c4d 7799ce262020a896fcb2002ca7384a7d {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal"} -C3N-01346.WGS.T C3N-01346 UCEC WGS tumor CPT0116550007 CPT0116550007.WholeGenome.RP-1303.bam 68253371730 BAM aligned CPTAC3 f5585019-268c-4cbc-a277-ff3029923103 7fc00b22db86adb1f542d13ff9be045e {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor"} -C3N-01346.WGS.T.hg38 C3N-01346 UCEC WGS tumor CPT0116550007 c045de53-714c-4f81-8f6a-333f80db7d72_wgs_gdc_realn.bam 98232688673 BAM harmonized CPTAC3 1a0c3a89-4547-4e37-aede-265ae25de36f 46d655a8ac69da252826439ba476e0ba {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor"} -C3N-01346.WXS.A C3N-01346 UCEC WXS tissue_normal CPT0116570006 CPT0116570006.WholeExome.RP-1303.bam 22824271301 BAM aligned CPTAC3 80a6c220-503a-4a69-9c81-bf995175e82c cf3804f6737865fe2dfa1482148c8bcb {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.WXS.A.hg38 C3N-01346 UCEC WXS tissue_normal CPT0116570006 d32a4900-85bb-4bc2-9700-97bf3f5cdb30_wxs_gdc_realn.bam 30811970821 BAM harmonized CPTAC3 2068bbef-ceaa-4f33-9078-6c12b63adeaa 903448e48ab1bdca2799bfca23ccfb3d {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01346.WXS.N C3N-01346 UCEC WXS blood_normal CPT0116610002 CPT0116610002.WholeExome.RP-1303.bam 31397496035 BAM aligned CPTAC3 008f12f6-e262-4f69-821d-32f09c4a56fe 8ec630ce069d5c1daf2ccfaf48ac378c {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal"} -C3N-01346.WXS.N.hg38 C3N-01346 UCEC WXS blood_normal CPT0116610002 3db17e2b-7fc3-4dc1-9fa9-e0859db32a3e_wxs_gdc_realn.bam 42095488353 BAM harmonized CPTAC3 1a0e6a0f-57d5-4378-80a4-d124eb1a8779 06006b876918a6bfbd1760192b081353 {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal"} -C3N-01346.WXS.T C3N-01346 UCEC WXS tumor CPT0116550007 CPT0116550007.WholeExome.RP-1303.bam 26478617925 BAM aligned CPTAC3 fdca91d2-25b0-4f76-857c-db178c70dbfd 2aa0330deb280b0c379d49629da0cb39 {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor"} -C3N-01346.WXS.T.hg38 C3N-01346 UCEC WXS tumor CPT0116550007 c045de53-714c-4f81-8f6a-333f80db7d72_wxs_gdc_realn.bam 36875011825 BAM harmonized CPTAC3 57d796cc-0636-4958-937c-4f8bdb46ebbe 7c1f26bf9fddbcdfce50c76e237a6b69 {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor"} -C3N-01349.MethArray.Green.T C3N-01349 UCEC Methylation_Array tumor CPT0116630006 203028200101_R03C01_Grn.idat 13676235 IDAT Green NA CPTAC3 d7ef4697-992c-4ad3-b22b-ffcb5df38aed ff67083ad7f954d99aca3eb3393dac42 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor"} -C3N-01349.MethArray.Red.T C3N-01349 UCEC Methylation_Array tumor CPT0116630006 203028200101_R03C01_Red.idat 13676235 IDAT Red NA CPTAC3 b1eb7174-1d5a-44b9-b6de-3625c4a8d794 492e48dc51cdecfb4e061ce691a7f857 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor"} -C3N-01349.miRNA-Seq.S32_L005_R1.T C3N-01349 UCEC miRNA-Seq tumor CPT0116630009 181119_UNC31-K00269_0165_AH27WCBBXY_ACTTGA_S32_L005_R1_001.unaln.bam 229017496 BAM S32_L005_R1 unaligned CPTAC3 cfcff0fa-1511-4e8a-bc28-b560d4f29f46 cfb526f10baeacdbb49e2f4591a49d7c {"aliquot_tag": "ALQ_48e35f43", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01349.miRNA-Seq.T.hg38 C3N-01349 UCEC miRNA-Seq tumor CPT0116630009 c1d61e42-d4bb-455f-b8c5-e166aa1cb038_mirnaseq_gdc_realn.bam 255389054 BAM harmonized CPTAC3 7375db27-d2f5-4672-9ca5-0a37e9585819 3febb90aff40ad91a7e74303e80456de {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.chimeric.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.chimeric.gdc_realn.bam 70366872 BAM chimeric harmonized CPTAC3 5a9a5276-3d88-4a59-9a14-9a061469b66d bcfcefd5310001614b4d45b745fe93cc {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.chimeric.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.chimeric.gdc_realn.bam 218001226 BAM chimeric harmonized CPTAC3 b4e9316b-7b0a-4ba8-940e-2d090ad104c9 5e0ffe3500ee2c05221209aa3568f375 {"aliquot_tag": "ALQ_7a5202e5", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.genomic.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.genomic.gdc_realn.bam 9394931911 BAM genomic harmonized CPTAC3 01bf4f9e-c502-45c4-bd96-e61bc7d08728 2fc5957908ff716a4e8873e995b18267 {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.genomic.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.genomic.gdc_realn.bam 11269607142 BAM genomic harmonized CPTAC3 8d415e88-fd14-4236-b7ea-e9ebff3485e1 e39966cc2c570b143cc8db10e357c8ec {"aliquot_tag": "ALQ_7a5202e5", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.S10_L003_R1.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R1_001.fastq.gz 4111081520 FASTQ S10_L003_R1 unaligned CPTAC3 61da9b88-7482-4b7a-8e66-275ecf12ceaf 557c998197c73fb615c5bf788fb9299f {"aliquot_tag": "ALQ_48e35f43", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.S10_L003_R2.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R2_001.fastq.gz 4449704981 FASTQ S10_L003_R2 unaligned CPTAC3 c23d4640-ab47-475d-9805-92cabdd16f22 934c617301e51fabd4b69539a2c06d94 {"aliquot_tag": "ALQ_48e35f43", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.S14_R1.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R1_001.fastq.gz 6843220107 FASTQ S14_R1 unaligned CPTAC3 4d1944a9-6be7-416a-95e6-09ba204a1156 1a9f68dce2633edc8d02618e28b8b3b2 {"aliquot_tag": "ALQ_7a5202e5", "sample": "S14", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.S14_R2.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R2_001.fastq.gz 6973914603 FASTQ S14_R2 unaligned CPTAC3 1a3dab38-cbec-4f18-9fff-d2ba31895334 b692c91aa4a768a6f2762d42af54b165 {"aliquot_tag": "ALQ_7a5202e5", "sample": "S14", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.transcriptome.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.transcriptome.gdc_realn.bam 11307795323 BAM transcriptome harmonized CPTAC3 f0d7cd15-763c-4da1-ac6c-4c8c21e73949 16c24fd5706401a508f850a43f302e28 {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor"} -C3N-01349.RNA-Seq.transcriptome.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.transcriptome.gdc_realn.bam 5188615671 BAM transcriptome harmonized CPTAC3 998a9a10-8ff5-4beb-bd5f-ae198b42efb6 2c89f7a9865b358099a9efe167b9b6b1 {"aliquot_tag": "ALQ_7a5202e5", "gdc_sample_type": "Primary Tumor"} -C3N-01349.WGS.N C3N-01349 UCEC WGS blood_normal CPT0116700002 CPT0116700002.WholeGenome.RP-1303.bam 60320871709 BAM aligned CPTAC3 dff326aa-1f51-4b76-a66a-305f223c66ff be68943d798af4971a30a1d8eb30b7cd {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal"} -C3N-01349.WGS.N.hg38 C3N-01349 UCEC WGS blood_normal CPT0116700002 567a10ad-cdde-4eb0-8466-fc347bebfc3d_wgs_gdc_realn.bam 87428347472 BAM harmonized CPTAC3 6207248b-6334-4d87-a3fe-328bd55629f8 c42c45505bb41d9b485e3d6cf383a855 {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal"} -C3N-01349.WGS.T C3N-01349 UCEC WGS tumor CPT0116630006 CPT0116630006.WholeGenome.RP-1303.bam 67783617495 BAM aligned CPTAC3 76772d29-4e97-4528-82d4-55c26b02b3b6 675bec04504d4303bd140f34c94b9e76 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor"} -C3N-01349.WGS.T.hg38 C3N-01349 UCEC WGS tumor CPT0116630006 22644f97-481a-4e62-a318-5f5e77b80855_wgs_gdc_realn.bam 98951152542 BAM harmonized CPTAC3 fc1377b1-042b-4c9d-91a4-03028f920461 9049ac81ce0bf12d669894145db7f871 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor"} -C3N-01349.WXS.N C3N-01349 UCEC WXS blood_normal CPT0116700002 CPT0116700002.WholeExome.RP-1303.bam 32061420908 BAM aligned CPTAC3 74985518-2c76-4279-8ada-4b1752610b06 f99b1f5cd6e0fb89fb79a9557f92e7ac {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal"} -C3N-01349.WXS.N.hg38 C3N-01349 UCEC WXS blood_normal CPT0116700002 567a10ad-cdde-4eb0-8466-fc347bebfc3d_wxs_gdc_realn.bam 42808716219 BAM harmonized CPTAC3 529af22f-6b99-4f52-8adf-7d13636e3990 c79003c83ba7399776b3d6a9c88ece4e {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal"} -C3N-01349.WXS.T C3N-01349 UCEC WXS tumor CPT0116630006 CPT0116630006.WholeExome.RP-1303.bam 21866618462 BAM aligned CPTAC3 4b1d20a1-9201-493b-8b52-441b0a864589 0e0f1a5e3232a759d56c8d631cb8b790 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor"} -C3N-01349.WXS.T.hg38 C3N-01349 UCEC WXS tumor CPT0116630006 22644f97-481a-4e62-a318-5f5e77b80855_wxs_gdc_realn.bam 30110828198 BAM harmonized CPTAC3 c94b89bc-2589-4dbc-b42c-53dbd252d63b 72f0ea119f8dca0859e1d1efa871369f {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor"} -C3N-01361.MethArray.Green.A C3N-01361 CCRCC Methylation_Array tissue_normal CPT0088780009 204930640065_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 eceacdf9-1834-4152-8d29-6a38699ae662 d78567ebdd971b6e8175bfa8ced2d5c1 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.MethArray.Green.T C3N-01361 CCRCC Methylation_Array tumor CPT0088760009 202163550076_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 44fb3ccb-2def-4a3a-bf6e-7e98252c80d8 402263042c100be61b76d619e178f95e {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor"} -C3N-01361.MethArray.Red.A C3N-01361 CCRCC Methylation_Array tissue_normal CPT0088780009 204930640065_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 7fb57148-3fb2-4d04-9bdf-5fb415c4de48 0848102ec1b65617ddf63ce8c9a5fab1 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.MethArray.Red.T C3N-01361 CCRCC Methylation_Array tumor CPT0088760009 202163550076_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f90e083e-674e-4f7a-af58-6db5c06f3b0c 0bc7c3e0c44e7b284f19cf1707518f17 {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor"} -C3N-01361.miRNA-Seq.A.hg38 C3N-01361 CCRCC miRNA-Seq tissue_normal CPT0088780006 6470670b-c83c-4f97-95d2-371a9abb8147_mirnaseq_gdc_realn.bam 205501599 BAM harmonized CPTAC3 70023b0c-15ee-4c9b-ada9-0e625a08d849 a1e30744e8a3bc20a6f452920fcd8d56 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.miRNA-Seq.S16_L006_R1.T C3N-01361 CCRCC miRNA-Seq tumor CPT0088760006 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L006_R1_001.unaln.bam 167186391 BAM S16_L006_R1 unaligned CPTAC3 4952dc79-4f28-4832-a1b9-0dec1f6703f8 9e38e0551ecbd1ef03bd88884b5b46a3 {"aliquot_tag": "ALQ_83eb6a32", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01361.miRNA-Seq.S32_L002_R1.A C3N-01361 CCRCC miRNA-Seq tissue_normal CPT0088780006 181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L002_R1_001.unaln.bam 182965471 BAM S32_L002_R1 unaligned CPTAC3 191d8926-bf18-48a3-af5d-6bd3d48fb3d2 67001b2a00b7eac8a5bb7a4220a66c6d {"aliquot_tag": "ALQ_3cdbd453", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.miRNA-Seq.T.hg38 C3N-01361 CCRCC miRNA-Seq tumor CPT0088760006 24b5dbbf-c2b1-4474-9244-db3c3ff8fee5_mirnaseq_gdc_realn.bam 189207498 BAM harmonized CPTAC3 e4792232-f24c-4a4c-8ea3-818f6d973d7e 44aa8b36813eaf96b15995c278dd0a63 {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor"} -C3N-01361.RNA-Seq.chimeric.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.chimeric.gdc_realn.bam 33049036 BAM chimeric harmonized CPTAC3 195b2137-2471-47ac-91e9-c3feb26c72fd 073f1ba3dd9a1888f9ef27ca5099cc26 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.RNA-Seq.chimeric.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.chimeric.gdc_realn.bam 37150267 BAM chimeric harmonized CPTAC3 5090887a-596c-4db6-802a-5185598062fe b81cee855040a5fec1d52628b1f3514a {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor"} -C3N-01361.RNA-Seq.genomic.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.genomic.gdc_realn.bam 4559444430 BAM genomic harmonized CPTAC3 56825602-f6c1-449d-a026-1e379762e07c b4b3d4dee1d102db8f0d49000d02b157 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.RNA-Seq.genomic.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.genomic.gdc_realn.bam 7757155451 BAM genomic harmonized CPTAC3 c3f9da0a-ffb7-46d6-9b53-5b15b3b51fc9 e100319035d9096e3ea887fee3c7b572 {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor"} -C3N-01361.RNA-Seq.S15_L004_R1.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R1_001.fastq.gz 3758817926 FASTQ S15_L004_R1 unaligned CPTAC3 167936d6-1173-432c-b2ad-7a4d15125075 80cc9975c4157c7fdbd6a4ac12e76800 {"aliquot_tag": "ALQ_83eb6a32", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01361.RNA-Seq.S15_L004_R2.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R2_001.fastq.gz 4094318640 FASTQ S15_L004_R2 unaligned CPTAC3 aa2585d2-e488-466b-8b9b-e07d7068743a effd398ec87c20ab98afb19dbb7171f9 {"aliquot_tag": "ALQ_83eb6a32", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01361.RNA-Seq.S3_L007_R1.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R1_001.fastq.gz 2303551148 FASTQ S3_L007_R1 unaligned CPTAC3 584971f6-a858-4b7a-b5e1-fae58b07a531 96d69435ef9e2bba145a8d8c9bed93dd {"aliquot_tag": "ALQ_3cdbd453", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.RNA-Seq.S3_L007_R2.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R2_001.fastq.gz 2415104375 FASTQ S3_L007_R2 unaligned CPTAC3 479821bb-bdfd-4dad-aade-fec8275e7753 8693e553bbdfa15cefb92d87a496d795 {"aliquot_tag": "ALQ_3cdbd453", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.RNA-Seq.transcriptome.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.transcriptome.gdc_realn.bam 5640123366 BAM transcriptome harmonized CPTAC3 cdf2d542-bf1f-4994-a4b2-b054cc735412 be219a45fecaec194831b380a94c9c67 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.RNA-Seq.transcriptome.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.transcriptome.gdc_realn.bam 9984298492 BAM transcriptome harmonized CPTAC3 3c02c18b-6d40-4af8-9354-bceefb37e568 e48fdc3232784b398c2d1155b50c778f {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor"} -C3N-01361.WGS.A C3N-01361 CCRCC WGS tissue_normal CPT0088780009 CPT0088780009.WholeGenome.RP-1303.bam 52356742485 BAM aligned CPTAC3 4727fff2-982d-41e2-a3fb-59b127bd4807 b40bea06be206b07cc925a69e2e9db76 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.WGS.A.hg38 C3N-01361 CCRCC WGS tissue_normal CPT0088780009 e383b93a-23df-4fa3-9434-c5b7e3c428e6_wgs_gdc_realn.bam 76776046775 BAM harmonized CPTAC3 857615e9-258a-452c-9a47-0852c2b32c92 92b77344d3605f7e42390b291ab24886 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.WGS.N C3N-01361 CCRCC WGS blood_normal CPT0088820002 CPT0088820002.WholeGenome.RP-1303.bam 63003621552 BAM aligned CPTAC3 547ac4c3-2de9-4f34-9ef2-eb9a0e3a1d91 953752b15e43ec9eec693791e40159d7 {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01361.WGS.N.hg38 C3N-01361 CCRCC WGS blood_normal CPT0088820002 0a0e20bd-efd5-444a-b89b-b7c240a062c7_gdc_realn.bam 94124398732 BAM harmonized CPTAC3 b5e5711c-a2fe-4d27-a0bc-bfc24610700f 57bb573ced9d585368da55c7fefe606b {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01361.WGS.T C3N-01361 CCRCC WGS tumor CPT0088760009 CPT0088760009.WholeGenome.RP-1303.bam 79284930807 BAM aligned CPTAC3 0bdad45d-1274-4f46-b7f3-82f215ffd3ca d6e4ae92d988f3d5ed242855635472e7 {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor"} -C3N-01361.WGS.T.hg38 C3N-01361 CCRCC WGS tumor CPT0088760009 fbd6a4c7-253b-4895-83a8-349aae8f0273_gdc_realn.bam 118619538470 BAM harmonized CPTAC3 513087cd-d722-4195-b1cd-1f64546057a8 ea4dd6683d6ee7cdebe1ab2a4bcf9a68 {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor"} -C3N-01361.WXS.A C3N-01361 CCRCC WXS tissue_normal CPT0088780009 CPT0088780009.WholeExome.RP-1303.bam 34802303911 BAM aligned CPTAC3 5aff2890-65bf-4daf-abab-321472bcd41f a35c760816473c258606bb0c47d97719 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.WXS.A.hg38 C3N-01361 CCRCC WXS tissue_normal CPT0088780009 e383b93a-23df-4fa3-9434-c5b7e3c428e6_wxs_gdc_realn.bam 47138172770 BAM harmonized CPTAC3 50cf77c6-ccdc-4c75-9636-3827f74d0538 e207d1ebc1aa3ba701597b2c354c4fbb {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01361.WXS.N C3N-01361 CCRCC WXS blood_normal CPT0088820002 CPT0088820002.WholeExome.RP-1303.bam 30022687384 BAM aligned CPTAC3 1f840f6e-f976-46eb-85ee-096aca39e1c1 72ce61a737eb9f9239ea03f5f2eb43b3 {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01361.WXS.N.hg38 C3N-01361 CCRCC WXS blood_normal CPT0088820002 0a0e20bd-efd5-444a-b89b-b7c240a062c7_gdc_realn.bam 40906222372 BAM harmonized CPTAC3 b24f524d-370a-454e-90a4-425e1d1b0848 9cd348e92e92c223cd41971129216fca {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01361.WXS.T C3N-01361 CCRCC WXS tumor CPT0088760009 CPT0088760009.WholeExome.RP-1303.bam 26847073707 BAM aligned CPTAC3 405fcf6b-9ca4-4477-82a6-64c940f1875f 6951213b00109577b26c41bf6f718a0b {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor"} -C3N-01361.WXS.T.hg38 C3N-01361 CCRCC WXS tumor CPT0088760009 fbd6a4c7-253b-4895-83a8-349aae8f0273_gdc_realn.bam 37030414913 BAM harmonized CPTAC3 b8f8182d-2d97-4676-bf1e-85dc7d73c2bc 240df111cc5d46f22106a5b6519d252f {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor"} -C3N-01362.MethArray.Green.T C3N-01362 CCRCC Methylation_Array tumor CPT0380070009 205555380179_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 7f5f36c9-4382-457c-adc9-688b9690c46b 613ce3525ed9c2ac7fb2cb26dcb223d9 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor"} -C3N-01362.MethArray.Red.T C3N-01362 CCRCC Methylation_Array tumor CPT0380070009 205555380179_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 761f17b0-fb6a-4941-9cc1-0e0a072168a4 431126ec81abe42c7aea76d52bbd6806 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor"} -C3N-01362.miRNA-Seq.S39_L003_R1.T C3N-01362 CCRCC miRNA-Seq tumor CPT0380070006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACAGTG_S39_L003_R1_001.unaln.bam 251126758 BAM S39_L003_R1 unaligned CPTAC3 6efbe72b-c2ad-4de2-bc83-c1496bb2917b a7eb5072e8e9c68a6fe91780f2bdcde6 {"aliquot_tag": "ALQ_a9ec0198", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01362.miRNA-Seq.T.hg38 C3N-01362 CCRCC miRNA-Seq tumor CPT0380070006 f42e626c-a202-44d5-95fd-1f8a49d87ba0_mirnaseq_gdc_realn.bam 263952434 BAM harmonized CPTAC3 3ddf9e9e-8753-42ae-ae7e-8bf97ceeb0ad e327e31e830b18a51c286fdb7a243d1a {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor"} -C3N-01362.RNA-Seq.chimeric.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.chimeric.gdc_realn.bam 132218468 BAM chimeric harmonized CPTAC3 2166b7f6-7389-4cec-846f-09dac02950b5 52db04d33f060ce6c8ede231f9d0719b {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor"} -C3N-01362.RNA-Seq.genomic.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.genomic.gdc_realn.bam 12846858141 BAM genomic harmonized CPTAC3 e843cd80-8719-4d3e-8b06-133d05e78151 4e57d327ecf4efbc03adc53f2edb3ae0 {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor"} -C3N-01362.RNA-Seq.S1_L001_R1.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 6411723357 FASTQ S1_L001_R1 unaligned CPTAC3 491c360a-853a-45a7-89ef-bf2d4e0c2b95 ffaaa340dcc49de894dcf2b01ebe9dd2 {"aliquot_tag": "ALQ_a9ec0198", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01362.RNA-Seq.S1_L001_R2.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 7328988483 FASTQ S1_L001_R2 unaligned CPTAC3 199a7fe0-1412-496f-a1b0-83e313664353 2a8ee627b1825d63aa85fae1b458181a {"aliquot_tag": "ALQ_a9ec0198", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01362.RNA-Seq.transcriptome.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.transcriptome.gdc_realn.bam 18461796051 BAM transcriptome harmonized CPTAC3 d0b4233e-e098-41a3-9395-e642425fde13 edb2ef304b24b3dc72d70e3cf070850d {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor"} -C3N-01362.WGS.N C3N-01362 CCRCC WGS blood_normal CPT0380340002 CPT0380340002.WholeGenome.RP-2158.bam 26199352816 BAM aligned CPTAC3 572242fe-3a57-462e-9585-340b62a83d95 0ed94963251ef90463e432105a6b6dd6 {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal"} -C3N-01362.WGS.N.hg38 C3N-01362 CCRCC WGS blood_normal CPT0380340002 ecf883e0-2dfe-4ae3-b792-55a66cfb6008_wgs_gdc_realn.bam 77722214181 BAM harmonized CPTAC3 8118ada0-0d7e-4ef2-a989-72ddfb396325 faf5fa262e41686997a2da827e113890 {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal"} -C3N-01362.WGS.T C3N-01362 CCRCC WGS tumor CPT0380070009 CPT0380070009.WholeGenome.RP-2158.bam 37719933914 BAM aligned CPTAC3 97bd519a-4247-4938-8ed1-067de905540d cbfd917ad6cf6b87c56adb712f815ff1 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor"} -C3N-01362.WGS.T.hg38 C3N-01362 CCRCC WGS tumor CPT0380070009 af3bad5c-867a-41a6-bafe-e1dce7ae4d61_wgs_gdc_realn.bam 110602045139 BAM harmonized CPTAC3 9fed8e0d-1905-4605-a135-22e3c96ea76d c83b2b3c3ed9dc5aa82cc46e7a1ddb9b {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor"} -C3N-01362.WXS.N C3N-01362 CCRCC WXS blood_normal CPT0380340002 CPT0380340002.WholeExome.RP-1303.bam 24568635578 BAM aligned CPTAC3 911198d5-baa8-4fdc-9a66-f666357c1171 f650cacd872a8efaae0ec48d8cf5c1aa {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal"} -C3N-01362.WXS.N.hg38 C3N-01362 CCRCC WXS blood_normal CPT0380340002 ecf883e0-2dfe-4ae3-b792-55a66cfb6008_wxs_gdc_realn.bam 34069538036 BAM harmonized CPTAC3 4b6a513a-4723-4880-8cd4-3613840ad8b6 261d47a7b0e2f7721f28a3045a21ee53 {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal"} -C3N-01362.WXS.T C3N-01362 CCRCC WXS tumor CPT0380070009 CPT0380070009.WholeExome.RP-1303.bam 19522473994 BAM aligned CPTAC3 ea4f3f4c-2331-40b6-89bb-527d9493a5ac c295cf4de6f422516456ec87be5f31d4 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor"} -C3N-01362.WXS.T.hg38 C3N-01362 CCRCC WXS tumor CPT0380070009 af3bad5c-867a-41a6-bafe-e1dce7ae4d61_wxs_gdc_realn.bam 26624832485 BAM harmonized CPTAC3 90c198bd-ace0-47e3-af15-da7f2c59fc4e 4a690c0519ca91b282c4e4a5ca76d1dd {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor"} -C3N-01364.MethArray.Green.T C3N-01364 GBM Methylation_Array tumor CPT0093450009 202234380069_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 ecca7536-c3aa-453c-8c83-a733a30af04b f736989abf28aece67aab2bc0e2a93ab {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor"} -C3N-01364.MethArray.Red.T C3N-01364 GBM Methylation_Array tumor CPT0093450009 202234380069_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 9a3a5519-2d30-4b48-a91f-c2b9c11a1f32 27d0ac3b2c365d2c07c36087c889ef2e {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor"} -C3N-01364.miRNA-Seq.S48_L007_R1.T C3N-01364 GBM miRNA-Seq tumor CPT0093450006 180828_UNC32-K00270_0112_AHWTLNBBXX_TACAGC_S48_L007_R1_001.unaln.bam 222117710 BAM S48_L007_R1 unaligned CPTAC3 737ef6ea-a8bb-4ef5-a639-ef4409ed0875 a490d68743ed5d53faa39914f2f47b2b {"aliquot_tag": "ALQ_8c723628", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01364.miRNA-Seq.T.hg38 C3N-01364 GBM miRNA-Seq tumor CPT0093450006 aee27d9e-7f0b-4d50-b564-a110b782a5f3_mirnaseq_gdc_realn.bam 248199812 BAM harmonized CPTAC3 89629ea7-fa74-4f3f-9261-1c4f3001839a 63aa2be4763a3b675b4bc1ca69d137a8 {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor"} -C3N-01364.RNA-Seq.chimeric.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.chimeric.gdc_realn.bam 31298151 BAM chimeric harmonized CPTAC3 374d7f0e-3ce3-4ce2-81d3-8fb94c6f766b a5597233963199f2857ee3c23cbee897 {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor"} -C3N-01364.RNA-Seq.genomic.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.genomic.gdc_realn.bam 8512625345 BAM genomic harmonized CPTAC3 28be5f58-b672-4126-92ab-80d1caeb4028 55272da32c40ae312ec6b1dbff80207c {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor"} -C3N-01364.RNA-Seq.S2_L008_R1.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R1_001.fastq.gz 4080118644 FASTQ S2_L008_R1 unaligned CPTAC3 d1a8bc5a-1fee-467d-bd74-2f300eaca110 bacc7e5feb6be40d91fb0d26778b336f {"aliquot_tag": "ALQ_8c723628", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01364.RNA-Seq.S2_L008_R2.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R2_001.fastq.gz 4324767117 FASTQ S2_L008_R2 unaligned CPTAC3 8d374973-7198-49c6-a491-e98ca9a8232c c0fb59b6deacc0cbf4418fa909249d5c {"aliquot_tag": "ALQ_8c723628", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01364.RNA-Seq.transcriptome.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.transcriptome.gdc_realn.bam 10444373272 BAM transcriptome harmonized CPTAC3 cd046c2f-6e86-486c-8a61-3b7c789f9e43 b9e59018154fa1ec07d38fde08ff4439 {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor"} -C3N-01364.WGS.N C3N-01364 GBM WGS blood_normal CPT0093490002 CPT0093490002.WholeGenome.RP-1303.bam 61440378579 BAM aligned CPTAC3 cd2bde11-33a6-4e77-b8d5-a0962ecc287a 8af3ae25739af705bbd18bbef1873555 {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01364.WGS.N.hg38 C3N-01364 GBM WGS blood_normal CPT0093490002 49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wgs_gdc_realn.bam 90233355921 BAM harmonized CPTAC3 2e78972e-d40d-49c7-9dea-80a2ae300520 361b5f55940956db458fc13608c8e7f9 {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01364.WGS.T C3N-01364 GBM WGS tumor CPT0093450009 CPT0093450009.WholeGenome.RP-1303.bam 62683113569 BAM aligned CPTAC3 cbcb9196-153f-45ed-9918-064f813fabea ea6386b8634e466cd6680e3a40b6f2ab {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor"} -C3N-01364.WGS.T.hg38 C3N-01364 GBM WGS tumor CPT0093450009 5f6180da-9f43-41a4-ac5b-816dd3297285_wgs_gdc_realn.bam 91034187503 BAM harmonized CPTAC3 44b98b50-87ea-491b-bd05-5fa6650a8350 c24868289973260b71186d38627ab584 {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor"} -C3N-01364.WXS.N C3N-01364 GBM WXS blood_normal CPT0093490002 CPT0093490002.WholeExome.RP-1303.bam 59543952160 BAM aligned CPTAC3 a56dce4b-3468-4126-a23b-156d3a3894ec a38b2c001426d980bd75cb818a1898f4 {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01364.WXS.N.hg38 C3N-01364 GBM WXS blood_normal CPT0093490002 49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wxs_gdc_realn.bam 80186280371 BAM harmonized CPTAC3 c82073b0-cc01-4d02-a498-ec034e1b56d2 b86d6b81447560da119e0512554d419f {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01364.WXS.T C3N-01364 GBM WXS tumor CPT0093450009 CPT0093450009.WholeExome.RP-1303.bam 36944728175 BAM aligned CPTAC3 137a00f2-9c00-4a8c-ac49-ee36b85905ac 50a0bec0e6381644523cda4914df26ae {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor"} -C3N-01364.WXS.T.hg38 C3N-01364 GBM WXS tumor CPT0093450009 5f6180da-9f43-41a4-ac5b-816dd3297285_wxs_gdc_realn.bam 50361215715 BAM harmonized CPTAC3 a8b76d35-f66a-4040-bfed-be2ece7e3cbf 39b8156354753d5a5e722bc37f59f2bc {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor"} -C3N-01365.miRNA-Seq.A.hg38 C3N-01365 GBM miRNA-Seq tissue_normal CPT0402900011 b79e1251-ab72-47c9-91be-536e48c6e2ca_mirnaseq_gdc_realn.bam 265442536 BAM harmonized CPTAC3 f0ef482a-6b6f-4527-a97a-1268cd13d733 2ee52206e6b194443fc499b583ca2165 {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.miRNA-Seq.S40_L005_R1.A C3N-01365 GBM miRNA-Seq tissue_normal CPT0402900011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCGGCA_S40_L005_R1_001.unaln.bam 246506867 BAM S40_L005_R1 unaligned CPTAC3 641fbd62-5be4-4790-be99-c487e65764c9 ae842e8ac0744f2918cc209417cc970e {"aliquot_tag": "ALQ_9ba74ff7", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.RNA-Seq.chimeric.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.chimeric.gdc_realn.bam 465933722 BAM chimeric harmonized CPTAC3 b0333faf-0347-4a18-8543-1218e0bb0ee2 42ceea8c22ade86db1b56ff9e4087ebc {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.RNA-Seq.genomic.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.genomic.gdc_realn.bam 10267863597 BAM genomic harmonized CPTAC3 406ad337-9579-4e48-aa51-17aa1802ab23 0a69c6d928c47f54d9221cd5ac3bd552 {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.RNA-Seq.S11_L003_R1.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ S11_L003_R1 unaligned CPTAC3 9936d4a4-b553-40fc-9739-16e57a11ecee 37130b0f844ded68d4f593d19a753a9a {"aliquot_tag": "ALQ_9ba74ff7", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.RNA-Seq.S11_L003_R2.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R2_001.fastq.gz 4948579616 FASTQ S11_L003_R2 unaligned CPTAC3 10b7380d-90bc-47db-8580-ec64ccc6dea6 57767075694365df86e471fd213c90ea {"aliquot_tag": "ALQ_9ba74ff7", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.RNA-Seq.transcriptome.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.transcriptome.gdc_realn.bam 11140339091 BAM transcriptome harmonized CPTAC3 e89e1fb8-0d3d-44b9-86d1-4547baf79bce 6539318eb2741341db83e39b7ee48bc3 {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.WXS.A C3N-01365 GBM WXS tissue_normal CPT0402900007 CPT0402900007.WholeExome.RP-1303.bam 30135454971 BAM aligned CPTAC3 ca63dc64-16bb-43bd-ad1b-55236ecc7241 925f49ae57dbc835d6842aa63cf0a5cd {"aliquot_tag": "ALQ_6bdfdb83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.WXS.A.hg38 C3N-01365 GBM WXS tissue_normal CPT0402900007 707224bf-dd01-488d-9e23-2abc8477f15c_wxs_gdc_realn.bam 41380776856 BAM harmonized CPTAC3 a1dacd7d-6b75-4fe9-a2b2-3b5496d2aa71 98315bbd041cf3e3489c84afca803d7a {"aliquot_tag": "ALQ_6bdfdb83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01365.WXS.N C3N-01365 GBM WXS blood_normal CPT0403010002 CPT0403010002.WholeExome.RP-1303.bam 26391979122 BAM aligned CPTAC3 4aefb216-cefd-4be3-8652-8da7bba9223d 694940411cff19a50f1bc3bb695e88ff {"aliquot_tag": "ALQ_a7ad5cc0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01365.WXS.N.hg38 C3N-01365 GBM WXS blood_normal CPT0403010002 5e32c5e9-6286-46a1-8780-4ed65d13fde0_wxs_gdc_realn.bam 36291423036 BAM harmonized CPTAC3 02d51bfb-91b3-414c-9ac7-7bb7adc737ab c2485e185105079eec110b578ae21994 {"aliquot_tag": "ALQ_a7ad5cc0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01366.MethArray.Green.T C3N-01366 GBM Methylation_Array tumor CPT0093510009 202234380017_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7c541244-5c87-44ab-b69f-ad1d3e1fc770 90390608fdbc6af51694b5a792a05dc4 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor"} -C3N-01366.MethArray.Red.T C3N-01366 GBM Methylation_Array tumor CPT0093510009 202234380017_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 4346ab8b-8652-4667-a4fb-2598604cf4f2 e3ddb6e752afa652ac2b4bad07fd325f {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor"} -C3N-01366.miRNA-Seq.S32_L007_R1.T C3N-01366 GBM miRNA-Seq tumor CPT0093510006 180828_UNC32-K00270_0112_AHWTLNBBXX_TATAAT_S32_L007_R1_001.unaln.bam 274027244 BAM S32_L007_R1 unaligned CPTAC3 cf17b84e-1ce1-4e9c-9cc5-8ec1d6093971 47c806f5ed8d4909949e51e2d76d23db {"aliquot_tag": "ALQ_b2ae434d", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01366.miRNA-Seq.T.hg38 C3N-01366 GBM miRNA-Seq tumor CPT0093510006 d3050d4d-543c-40af-8e6e-569c0951f14a_mirnaseq_gdc_realn.bam 307539345 BAM harmonized CPTAC3 5f2fbbfe-cb87-4eda-9cd1-43d9e7aadd7f 912c0fce93fb09c02a95f68327e2b30b {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor"} -C3N-01366.RNA-Seq.chimeric.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.chimeric.gdc_realn.bam 26747850 BAM chimeric harmonized CPTAC3 02157e1b-8962-402a-a786-514b2fca5cc4 21dc348fd9b671fe92ed3db5a4ec793f {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor"} -C3N-01366.RNA-Seq.genomic.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.genomic.gdc_realn.bam 8414599321 BAM genomic harmonized CPTAC3 196012c7-1e92-43c6-b838-674e977a5ed8 b94ff99904cecc6b606837cbad1d6b09 {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor"} -C3N-01366.RNA-Seq.S1_L008_R1.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R1_001.fastq.gz 3842996129 FASTQ S1_L008_R1 unaligned CPTAC3 2473c3e8-c5b3-4cd7-badc-e7451a85bcd0 0b3f0bdacd824681afbdbbeb0c732fc8 {"aliquot_tag": "ALQ_b2ae434d", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01366.RNA-Seq.S1_L008_R2.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R2_001.fastq.gz 4130353029 FASTQ S1_L008_R2 unaligned CPTAC3 117c36a0-7e93-4b90-b819-0d8db6787d03 e29ed65fb41ee8b85f1a01c0188b7872 {"aliquot_tag": "ALQ_b2ae434d", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01366.RNA-Seq.transcriptome.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.transcriptome.gdc_realn.bam 11203814238 BAM transcriptome harmonized CPTAC3 68da9046-783a-4be4-9546-b1c20ce43637 68d0c532b73e20ccbf99d0a8a2f56048 {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor"} -C3N-01366.WGS.N C3N-01366 GBM WGS blood_normal CPT0093540002 CPT0093540002.WholeGenome.RP-1303.bam 68247624433 BAM aligned CPTAC3 4fa37f8f-a8ab-49fd-bbf9-baf2fed74d57 8451069dbe86fe4f435baae561c82049 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal"} -C3N-01366.WGS.N.hg38 C3N-01366 GBM WGS blood_normal CPT0093540002 dc744f87-3e3b-4eb1-b7de-ab743ef63880_wgs_gdc_realn.bam 101811273944 BAM harmonized CPTAC3 64768550-ac2f-4b5c-84ea-37014a8c1af4 b07381fca7f2ab78c47ecf6c24b4a035 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal"} -C3N-01366.WGS.T C3N-01366 GBM WGS tumor CPT0093510009 CPT0093510009.WholeGenome.RP-1303.bam 69760247843 BAM aligned CPTAC3 67083540-a965-4bc5-824d-240e220aa788 c49674b76cda10109db6250dd367fc1f {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor"} -C3N-01366.WGS.T.hg38 C3N-01366 GBM WGS tumor CPT0093510009 bf7d406f-320d-4fc8-ba31-5d5779b11a18_wgs_gdc_realn.bam 104729974826 BAM harmonized CPTAC3 aedd51d0-330d-4780-b6fc-9ba566274980 f46bf4d2c6b386aabf0b31ebc6f19360 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor"} -C3N-01366.WXS.N C3N-01366 GBM WXS blood_normal CPT0093540002 CPT0093540002.WholeExome.RP-1303.bam 32338666677 BAM aligned CPTAC3 0e3ad518-68b7-448b-8bd0-a07c351a8e87 5695208c0fa13829b04ed75dc6ad3095 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal"} -C3N-01366.WXS.N.hg38 C3N-01366 GBM WXS blood_normal CPT0093540002 dc744f87-3e3b-4eb1-b7de-ab743ef63880_wxs_gdc_realn.bam 43877654819 BAM harmonized CPTAC3 79890e10-5e89-4154-a9dc-af54dd220390 cbaa98606ea7a0be152f1d95ce2100d7 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal"} -C3N-01366.WXS.T C3N-01366 GBM WXS tumor CPT0093510009 CPT0093510009.WholeExome.RP-1303.bam 35753489535 BAM aligned CPTAC3 5dbaa507-8f20-4fef-b71b-b129177ae85f 902695836c86c6018dc98493a2da9c40 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor"} -C3N-01366.WXS.T.hg38 C3N-01366 GBM WXS tumor CPT0093510009 bf7d406f-320d-4fc8-ba31-5d5779b11a18_wxs_gdc_realn.bam 48519000756 BAM harmonized CPTAC3 07b63c53-93d2-498b-bf25-26786af13839 2b96fd6bb5c200b0cf0883f420cfff90 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor"} -C3N-01367.MethArray.Green.T C3N-01367 GBM Methylation_Array tumor CPT0093550012 202234370086_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d77c0b9b-0928-4fe9-b99d-1ebe4946f033 fa0b594364ec68ca02f4aaa597a60bd3 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor"} -C3N-01367.MethArray.Red.T C3N-01367 GBM Methylation_Array tumor CPT0093550012 202234370086_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 671e34d0-805a-4fbd-9367-886086546d8f 60e155fe144ffe31cde987312339cd09 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor"} -C3N-01367.miRNA-Seq.S31_L007_R1.T C3N-01367 GBM miRNA-Seq tumor CPT0093550006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCATTC_S31_L007_R1_001.unaln.bam 191928365 BAM S31_L007_R1 unaligned CPTAC3 25274363-c7ef-47e5-9f28-4d9e6273018c 08b7c239f4d075d50c200a4ac7b15bc7 {"aliquot_tag": "ALQ_472ee58d", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01367.miRNA-Seq.T.hg38 C3N-01367 GBM miRNA-Seq tumor CPT0093550006 5eb0a705-1018-48a5-8f5e-6ff6c652b0a8_mirnaseq_gdc_realn.bam 219936662 BAM harmonized CPTAC3 7877587b-72b9-4442-bc28-785a58393dc6 3e3414878dd2c3d87e39360ceed5d6b0 {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor"} -C3N-01367.RNA-Seq.chimeric.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.chimeric.gdc_realn.bam 30832128 BAM chimeric harmonized CPTAC3 218d4b57-9cde-4523-bc3e-071864f1dcc6 6beaf95c607168def36becaaf636659d {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor"} -C3N-01367.RNA-Seq.genomic.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.genomic.gdc_realn.bam 8710045745 BAM genomic harmonized CPTAC3 f66cd985-2682-48ba-9eb4-b9204b05b71d 82239b0f8f6542559164f4a9a8dc13f4 {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor"} -C3N-01367.RNA-Seq.S4_L007_R1.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R1_001.fastq.gz 3870494330 FASTQ S4_L007_R1 unaligned CPTAC3 922258c7-88bc-4d03-8018-5070f9061da4 a26c3bc9481624b6817d89cf69fc18f7 {"aliquot_tag": "ALQ_472ee58d", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01367.RNA-Seq.S4_L007_R2.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R2_001.fastq.gz 4185337784 FASTQ S4_L007_R2 unaligned CPTAC3 884c747b-7ece-4152-89ed-018009adab0f 324ac325ecb1d3fe36a89afbe457b59f {"aliquot_tag": "ALQ_472ee58d", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01367.RNA-Seq.transcriptome.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.transcriptome.gdc_realn.bam 9249519225 BAM transcriptome harmonized CPTAC3 c2770a94-e199-4ea6-ac3e-a1acd13a613c 7350fa4745369d49467940d0844c37cd {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor"} -C3N-01367.WGS.N C3N-01367 GBM WGS blood_normal CPT0093570002 CPT0093570002.WholeGenome.RP-1303.bam 77949245810 BAM aligned CPTAC3 1c41ed2c-df2c-4cb8-b485-91f91839a69e 256ebb8a5ad6ec42249e6f3496b9da73 {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01367.WGS.N.hg38 C3N-01367 GBM WGS blood_normal CPT0093570002 48c74137-31a5-45dc-a63f-026614b79af0_wgs_gdc_realn.bam 116424006952 BAM harmonized CPTAC3 cd8825ce-40b7-4842-b8f5-227d168734d8 72a8fc07d6c9c0d3fe43e7fdb8c1c3ee {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01367.WGS.T C3N-01367 GBM WGS tumor CPT0093550012 CPT0093550012.WholeGenome.RP-1303.bam 59568704641 BAM aligned CPTAC3 cec9a38a-8a61-433a-a8db-32ee55be862e f43677dac32dba7e8d2a1a68172ce1bb {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor"} -C3N-01367.WGS.T.hg38 C3N-01367 GBM WGS tumor CPT0093550012 cf8b37ba-cabe-4e3b-9c0d-086725757e17_wgs_gdc_realn.bam 86693276819 BAM harmonized CPTAC3 fc340836-b124-4f46-b854-676386877c08 c55bd7003647ba7ebdb71d4594e679c7 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor"} -C3N-01367.WXS.N C3N-01367 GBM WXS blood_normal CPT0093570002 CPT0093570002.WholeExome.RP-1303.bam 61387633105 BAM aligned CPTAC3 ac02dca8-2b07-4a9a-91ab-c6be9ec1c43f 49057080cf059a208c5316e809b1d486 {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01367.WXS.N.hg38 C3N-01367 GBM WXS blood_normal CPT0093570002 48c74137-31a5-45dc-a63f-026614b79af0_wxs_gdc_realn.bam 83131092335 BAM harmonized CPTAC3 d1979603-e84c-47e7-b227-d9b43471d5c3 f76d8950de201088ad4256a97e66f275 {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01367.WXS.T C3N-01367 GBM WXS tumor CPT0093550012 CPT0093550012.WholeExome.RP-1303.bam 33246788530 BAM aligned CPTAC3 1034e18a-de73-4000-bc07-771f83086ff3 c5a4cf463cb87a8a893a725067161f96 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor"} -C3N-01367.WXS.T.hg38 C3N-01367 GBM WXS tumor CPT0093550012 cf8b37ba-cabe-4e3b-9c0d-086725757e17_wxs_gdc_realn.bam 45085165540 BAM harmonized CPTAC3 e47a1240-b6d9-4f8a-90bf-2111928826d6 7633b4aad463b1b22b2f289e79a80acc {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor"} -C3N-01368.MethArray.Green.T C3N-01368 GBM Methylation_Array tumor CPT0093590009 202234380061_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 02fb2fd6-e110-4bfe-8d1f-2d28db83f5b7 5dff0167bd8cb1ba9dc3a5c5ac734bd6 {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor"} -C3N-01368.MethArray.Red.T C3N-01368 GBM Methylation_Array tumor CPT0093590009 202234380061_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 47bcd28f-ae87-46ac-92a6-3c4b85f7915f 063ce8ded87946f3ea6b50eed652cae8 {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor"} -C3N-01368.miRNA-Seq.S30_L007_R1.T C3N-01368 GBM miRNA-Seq tumor CPT0093590006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCCCGA_S30_L007_R1_001.unaln.bam 230268306 BAM S30_L007_R1 unaligned CPTAC3 c0246dbb-bd76-4554-9aeb-40abf9f44dd6 d5c015d331cb063a6a22238affa86175 {"aliquot_tag": "ALQ_82de088c", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01368.miRNA-Seq.T.hg38 C3N-01368 GBM miRNA-Seq tumor CPT0093590006 2a9f4bf8-04c1-4045-9d04-1ba3e5a4261a_mirnaseq_gdc_realn.bam 262154236 BAM harmonized CPTAC3 304db52c-ed3d-4ebf-baef-7139e3b3e536 747096d54c0b398c5902de9541e48cda {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor"} -C3N-01368.RNA-Seq.chimeric.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.chimeric.gdc_realn.bam 41718597 BAM chimeric harmonized CPTAC3 6a985870-cc55-4b01-bb07-1a750c17480f 21e4665fdcd00545971bdc706f2bf12b {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor"} -C3N-01368.RNA-Seq.genomic.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.genomic.gdc_realn.bam 9310763112 BAM genomic harmonized CPTAC3 4e4d4d65-4a45-4eb7-ade9-565b5e2fdbf4 4b111434811b3537e87f3707f6694be6 {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor"} -C3N-01368.RNA-Seq.S21_L007_R1.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R1_001.fastq.gz 4328230752 FASTQ S21_L007_R1 unaligned CPTAC3 f630fa32-ae23-4686-a8ae-a15d6db483cd 9414bd5c38d0445d159fa939c83deb57 {"aliquot_tag": "ALQ_82de088c", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01368.RNA-Seq.S21_L007_R2.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R2_001.fastq.gz 4620982138 FASTQ S21_L007_R2 unaligned CPTAC3 46c53c9c-5e19-4deb-ac15-14e198cb6031 57637139a82acd5bf8f27785319ad766 {"aliquot_tag": "ALQ_82de088c", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01368.RNA-Seq.transcriptome.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.transcriptome.gdc_realn.bam 10695617534 BAM transcriptome harmonized CPTAC3 7e793277-30a7-4d71-8a13-cf84a29ff7dd 1aa6b183c55ea5291ffec23b1d8b40c7 {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor"} -C3N-01368.WGS.N C3N-01368 GBM WGS blood_normal CPT0093620002 CPT0093620002.WholeGenome.RP-1303.bam 66354102976 BAM aligned CPTAC3 f02a74f7-a975-43d2-8466-61e3464fec10 bd5552664e130bf180fab575c09b674c {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01368.WGS.N.hg38 C3N-01368 GBM WGS blood_normal CPT0093620002 6d5370f7-a363-4450-bf90-ade4abfee224_wgs_gdc_realn.bam 98468146967 BAM harmonized CPTAC3 ac39fb69-64aa-44e4-b308-e41df3a974eb 8243352d3007466757a15c62c9ef79dc {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01368.WGS.T C3N-01368 GBM WGS tumor CPT0093590009 CPT0093590009.WholeGenome.RP-1303.bam 56590210185 BAM aligned CPTAC3 122929ea-36ce-4e70-aa5a-6e02eb0c0205 4a852f3902950b7699c22f22c00eb13c {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor"} -C3N-01368.WGS.T.hg38 C3N-01368 GBM WGS tumor CPT0093590009 c2ed3978-37c5-4c6b-b61e-91ab4856698a_wgs_gdc_realn.bam 83200402994 BAM harmonized CPTAC3 bf41df48-ba05-4af3-8835-3c17bbd5236e 16ef9796cb57a0586202493529f74b5f {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor"} -C3N-01368.WXS.N C3N-01368 GBM WXS blood_normal CPT0093620002 CPT0093620002.WholeExome.RP-1303.bam 37977814163 BAM aligned CPTAC3 0e42a39c-9fc4-402e-bff6-213d72ac764b 53e5371675e6739e004bf2e3c5111c4e {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01368.WXS.N.hg38 C3N-01368 GBM WXS blood_normal CPT0093620002 6d5370f7-a363-4450-bf90-ade4abfee224_wxs_gdc_realn.bam 52458157496 BAM harmonized CPTAC3 9d951832-79fd-4c8e-b844-66626010bc2c 3b027976b09a86f530da18f5a1a94b0f {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01368.WXS.T C3N-01368 GBM WXS tumor CPT0093590009 CPT0093590009.WholeExome.RP-1303.bam 29671786944 BAM aligned CPTAC3 bd6d1d94-86c8-41ee-a889-0af85f093810 bca15a4515d79354fdfaa45840aac779 {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor"} -C3N-01368.WXS.T.hg38 C3N-01368 GBM WXS tumor CPT0093590009 c2ed3978-37c5-4c6b-b61e-91ab4856698a_wxs_gdc_realn.bam 40906096750 BAM harmonized CPTAC3 6b8e115e-923e-48e1-9fe5-a56ae20745f8 d6c3d2333f01d57ff2818fc2e1a5746d {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor"} -C3N-01369.MethArray.Green.T C3N-01369 GBM Methylation_Array tumor CPT0162020006 203027390118_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 acb05fe8-5761-4226-913a-7d37ba37e737 014652e566c94f7caf76e56b26f0d286 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor"} -C3N-01369.MethArray.Red.T C3N-01369 GBM Methylation_Array tumor CPT0162020006 203027390118_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 bd801005-15ca-43a5-b630-99ab8cc9c0bf 53951e7c30c38f0d22f21e02e10a5565 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor"} -C3N-01369.miRNA-Seq.S29_L002_R1.T C3N-01369 GBM miRNA-Seq tumor CPT0162020009 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 249909268 BAM S29_L002_R1 unaligned CPTAC3 4feafe9e-3f1a-4f34-875b-1e4462857a7a cfa2d1b964f660abbd733f412dcfe622 {"aliquot_tag": "ALQ_5d50b8e4", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01369.miRNA-Seq.T.hg38 C3N-01369 GBM miRNA-Seq tumor CPT0162020009 fb2fe162-6142-457b-86e9-a0be878100e9_mirnaseq_gdc_realn.bam 294909764 BAM harmonized CPTAC3 3f90d054-764d-43f2-94c7-d2adcf799eb9 29b55aa5de1d0461cd57e48b51e7043f {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor"} -C3N-01369.RNA-Seq.chimeric.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.chimeric.gdc_realn.bam 130465674 BAM chimeric harmonized CPTAC3 37939824-ab74-4c2f-99e4-63c7fd4e681c 1f923eca40746273616647da4700e242 {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor"} -C3N-01369.RNA-Seq.genomic.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.genomic.gdc_realn.bam 6882916972 BAM genomic harmonized CPTAC3 f596ea64-0577-437c-bcb2-8c6257d1a6dd 297e37f98c33c2ecd93371c96143b693 {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor"} -C3N-01369.RNA-Seq.S16_L004_R1.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 3010240413 FASTQ S16_L004_R1 unaligned CPTAC3 3ef18597-3dc6-4368-9843-ca003ca75acf 0bf983f73f6cc0dafad01a76b8d5ed30 {"aliquot_tag": "ALQ_5d50b8e4", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01369.RNA-Seq.S16_L004_R2.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 3290785428 FASTQ S16_L004_R2 unaligned CPTAC3 3e35295e-8294-4252-9d2b-be82bacc86ba 431c3b4007bb9520c5b8bc40c31815a7 {"aliquot_tag": "ALQ_5d50b8e4", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01369.RNA-Seq.transcriptome.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.transcriptome.gdc_realn.bam 8846013406 BAM transcriptome harmonized CPTAC3 0ad6606d-942e-4acb-b13d-18f8c432e8fc b3b45e457f4fe12085e7566929d8a757 {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor"} -C3N-01369.WGS.N C3N-01369 GBM WGS blood_normal CPT0162040002 CPT0162040002.WholeGenome.RP-1303.bam 63101405834 BAM aligned CPTAC3 c17f1af8-b88f-427a-8c11-d2fdc267ff83 dc5d535f6dd81140dd614e3d0f2bf52f {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01369.WGS.N.hg38 C3N-01369 GBM WGS blood_normal CPT0162040002 72e8c076-6bc4-4274-b90c-188820d472a1_wgs_gdc_realn.bam 92159766724 BAM harmonized CPTAC3 00a6c8d6-d21a-47d0-860b-af54979354bf 1389aeffbf8bc566e7955ff13d1f5f83 {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01369.WGS.T C3N-01369 GBM WGS tumor CPT0162020006 CPT0162020006.WholeGenome.RP-1303.bam 64549937121 BAM aligned CPTAC3 6ca8ece8-2ec1-4c98-a705-85d47cf7e70f 9b8100b4faea58342c19f2c65b254e04 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor"} -C3N-01369.WGS.T.hg38 C3N-01369 GBM WGS tumor CPT0162020006 b97f843a-68a7-430f-b277-93c55b7f4b76_wgs_gdc_realn.bam 93697537744 BAM harmonized CPTAC3 b65a532f-36d7-43e2-b46d-dc4f9d6ebade 39a301dfda45f6d87a52ea6ae9052dbc {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor"} -C3N-01369.WXS.N C3N-01369 GBM WXS blood_normal CPT0162040002 CPT0162040002.WholeExome.RP-1303.bam 28457151997 BAM aligned CPTAC3 51ebf434-8a15-4a7c-92d0-e41f92f9f5c2 082ff03b961b58fe38b9fef60905e861 {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01369.WXS.N.hg38 C3N-01369 GBM WXS blood_normal CPT0162040002 72e8c076-6bc4-4274-b90c-188820d472a1_wxs_gdc_realn.bam 38579615783 BAM harmonized CPTAC3 c5dd898e-88c5-49b4-9ac7-439751ae8efa 92b8384348db0a652946f41f5259e765 {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01369.WXS.T C3N-01369 GBM WXS tumor CPT0162020006 CPT0162020006.WholeExome.RP-1303.bam 18141477488 BAM aligned CPTAC3 b020ef3e-ebf5-4a61-bfd6-b9fa78bd3455 77b44887f2dda72ed058d8bdbef2bf30 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor"} -C3N-01369.WXS.T.hg38 C3N-01369 GBM WXS tumor CPT0162020006 b97f843a-68a7-430f-b277-93c55b7f4b76_wxs_gdc_realn.bam 25394906825 BAM harmonized CPTAC3 b89dd1e7-fcaa-4792-98de-8e2cc70a211e 270f9fd534e09e3f68205502d37d3751 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor"} -C3N-01370.MethArray.Green.T C3N-01370 GBM Methylation_Array tumor CPT0162060005 203027390105_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 829f0a38-645f-4fda-8a43-0890dce5e761 0492d1459a50a520ac246b84f4c5286f {"aliquot_tag": "ALQ_a166520f", "gdc_sample_type": "Primary Tumor"} -C3N-01370.MethArray.Red.T C3N-01370 GBM Methylation_Array tumor CPT0162060005 203027390105_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3d298857-d0c1-4988-b018-e0a6e93ca776 f5262f8ca267478135f287d93e454816 {"aliquot_tag": "ALQ_a166520f", "gdc_sample_type": "Primary Tumor"} -C3N-01375.MethArray.Green.T C3N-01375 PDA Methylation_Array tumor CPT0088180010 202176300039_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3546b2b5-aacd-4d5d-8a51-8126e12649a2 aee60fce591936010bee985677927601 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor"} -C3N-01375.MethArray.Red.T C3N-01375 PDA Methylation_Array tumor CPT0088180010 202176300039_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 026d56e3-e7b7-4dc7-9605-9408925e4fca c0abca957d67db3b8759c69141379f9f {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor"} -C3N-01375.miRNA-Seq.S18_L008_R1.T C3N-01375 PDA miRNA-Seq tumor CPT0088180007 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L008_R1_001.unaln.bam 204619641 BAM S18_L008_R1 unaligned CPTAC3 c731a132-c70d-4c56-a21b-40271cafe848 b28a9af548dc3f81c4107ff4987fc445 {"aliquot_tag": "ALQ_9d8507d8", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01375.miRNA-Seq.T.hg38 C3N-01375 PDA miRNA-Seq tumor CPT0088180007 e438227a-2590-40a3-8920-50bd71840366_mirnaseq_gdc_realn.bam 225484135 BAM harmonized CPTAC3 fe30ed2d-bbbe-442e-86b9-277fc2493de7 679e206b82c6fbf7d41f6d589379fa8f {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor"} -C3N-01375.RNA-Seq.chimeric.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.chimeric.gdc_realn.bam 31874418 BAM chimeric harmonized CPTAC3 5b1ac298-4889-4887-8b66-00f7d84a30d3 2be88d9239944951590b1cb0acde9293 {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor"} -C3N-01375.RNA-Seq.genomic.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.genomic.gdc_realn.bam 7817022860 BAM genomic harmonized CPTAC3 a4e8bb9f-4141-42fa-9e92-b23b02ac3cc7 44b3a3fbeef41ce70ff327e04a7505b0 {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor"} -C3N-01375.RNA-Seq.S5_L005_R1.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R1_001.fastq.gz 4079792609 FASTQ S5_L005_R1 unaligned CPTAC3 d647436f-5e41-4bef-a100-5c5cf00a282d 4a7e3268057559d99a0cb3852b419780 {"aliquot_tag": "ALQ_9d8507d8", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01375.RNA-Seq.S5_L005_R2.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R2_001.fastq.gz 4393615083 FASTQ S5_L005_R2 unaligned CPTAC3 33825407-09bb-4634-9037-685c0f893fc2 8d5e28f7553a0fcebe24664121d3ca2d {"aliquot_tag": "ALQ_9d8507d8", "sample": "S5", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01375.RNA-Seq.transcriptome.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.transcriptome.gdc_realn.bam 12168102588 BAM transcriptome harmonized CPTAC3 006e4428-28f0-4ae1-a348-df8392a35b08 5b9aa7835a41c04767f1d62e93bd9b4d {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WGS.N C3N-01375 PDA WGS blood_normal CPT0088220002 CPT0088220002.WholeGenome.RP-1303.bam 71516347998 BAM aligned CPTAC3 ffa0007d-98ff-4e92-8923-3e7ec2ba18d6 febe387b671bf57219c568baa9edb538 {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal"} -C3N-01375.WGS.N.hg38 C3N-01375 PDA WGS blood_normal CPT0088220002 70741c40-f272-4621-9043-296dbe5d6d26_gdc_realn.bam 105470647804 BAM harmonized CPTAC3 74338bba-fc03-4ca2-ab99-a60e1688c9c4 71e0b5c83a2b74f82cd2e3a140c97d3c {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal"} -C3N-01375.WGS.T C3N-01375 PDA WGS tumor CPT0088180010_1 CPT0088180010_1.WholeGenome.RP-1303.bam 118698258894 BAM aligned CPTAC3 3913e319-06c3-43bf-9120-9330b67e1349 0074e0082d2dfffcda0be65b92702c7c {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WGS.T C3N-01375 PDA WGS tumor CPT0088180010 CPT0088180010.WholeGenome.RP-1303.bam 71250595995 BAM aligned CPTAC3 54ae8ae9-a7b8-4171-a21f-0d65ccb40e86 ac0bd14da2a8a2e1a2fdce09d1c03692 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WGS.T.hg38 C3N-01375 PDA WGS tumor CPT0088180010_1 fb705e01-bb41-414c-a9c3-f3ac72c0aa4e_wgs_gdc_realn.bam 174570967767 BAM harmonized CPTAC3 f5357a10-f5e2-4372-ad47-71e415933515 10f9af9274f483dadadf66ce1e73b81d {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WGS.T.hg38 C3N-01375 PDA WGS tumor CPT0088180010 2467c285-0fcc-4eee-890a-9049ae7f0242_gdc_realn.bam 106474618900 BAM harmonized CPTAC3 f028c564-cae8-40c1-9acd-27e6674b8d8d ff858f187c6df56ceaef176291321548 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WXS.N C3N-01375 PDA WXS blood_normal CPT0088220002 CPT0088220002.WholeExome.RP-1303.bam 31991482556 BAM aligned CPTAC3 4e5407f5-96ec-4f2d-8c71-c7263980769b 46c31b494488c55c1e39dd78cd775071 {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal"} -C3N-01375.WXS.N.hg38 C3N-01375 PDA WXS blood_normal CPT0088220002 70741c40-f272-4621-9043-296dbe5d6d26_gdc_realn.bam 43694107832 BAM harmonized CPTAC3 e5f40e12-587d-4350-ae8f-477250c19e45 8caace52c41ac7004dd15e86f96603dc {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal"} -C3N-01375.WXS.T C3N-01375 PDA WXS tumor CPT0088180010_1 CPT0088180010_1.WholeExome.RP-1303.bam 48859202623 BAM aligned CPTAC3 2598104a-3588-42c2-a51f-0393f237e396 904c4dd4231e57cf9de18f8fff745daa {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WXS.T C3N-01375 PDA WXS tumor CPT0088180010 CPT0088180010.WholeExome.RP-1303.bam 25240613953 BAM aligned CPTAC3 feba0aa6-2046-42bb-bdc0-016501383c9a 221d00ac04adab47a224836f77e2c46b {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WXS.T.hg38 C3N-01375 PDA WXS tumor CPT0088180010_1 fb705e01-bb41-414c-a9c3-f3ac72c0aa4e_wxs_gdc_realn.bam 67073272324 BAM harmonized CPTAC3 024acf6b-8c63-45eb-b3a9-d6cf24bda035 c401561a544a7dad05b0c24aa3cf3fa0 {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor"} -C3N-01375.WXS.T.hg38 C3N-01375 PDA WXS tumor CPT0088180010 2467c285-0fcc-4eee-890a-9049ae7f0242_gdc_realn.bam 35091406033 BAM harmonized CPTAC3 dd1a49b4-9824-41d8-8d2b-93aec7e95245 65181a8cbe57e741a301f0e4c7849243 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor"} -C3N-01378.ANN_8b796960.MethArray.Green.T C3N-01378 PDA Methylation_Array tumor CPT0088230009 202178770100_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 867c38e1-6ed5-4b29-8fcc-3a8ef4351e84 be6dc24f20eba4625d47e1a882624d12 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.ANN_8b796960.MethArray.Red.T C3N-01378 PDA Methylation_Array tumor CPT0088230009 202178770100_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 7909e64f-a78c-4750-a274-cfb91b95b10c f2d8f0655d66b4779adabd00bdd80e47 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.ANN_8b796960.WGS.T C3N-01378 PDA WGS tumor CPT0088230009 CPT0088230009.WholeGenome.RP-1303.bam 79764801469 BAM aligned CPTAC3 bd8070eb-198c-4037-ad29-8a6fec9e03c9 dcb8c3d35e94a6fe5b004a60311aac99 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.ANN_8b796960.WGS.T.hg38 C3N-01378 PDA WGS tumor CPT0088230009 84850888-21a8-4c8a-a504-3cb5e3fcd783_gdc_realn.bam 121356054512 BAM harmonized CPTAC3 75e85168-36a6-4538-8bae-390321b7e733 0321ad8c601bbff0f1e98b4a6f7363c8 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.ANN_8b796960.WXS.T C3N-01378 PDA WXS tumor CPT0088230009 CPT0088230009.WholeExome.RP-1303.bam 34800506371 BAM aligned CPTAC3 685e90a9-edeb-40fd-ae1f-e79acc5d8ab8 653682e65ab6d1738da65eee8de6fab4 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.ANN_8b796960.WXS.T.hg38 C3N-01378 PDA WXS tumor CPT0088230009 84850888-21a8-4c8a-a504-3cb5e3fcd783_gdc_realn.bam 47708763668 BAM harmonized CPTAC3 8447d016-6a3f-4659-9f42-5775840f6ca4 f8fdb5836c3a62d6f924e43d95c4250d {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.miRNA-Seq.S16_L008_R1.T C3N-01378 PDA miRNA-Seq tumor CPT0088230006 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L008_R1_001.unaln.bam 241539795 BAM S16_L008_R1 unaligned CPTAC3 a4bffd09-4a25-475b-af16-2b83241056c4 42d0ebbb76926653eb28353b7c20d1bb {"aliquot_tag": "ALQ_1bc674f1", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01378.miRNA-Seq.T.hg38 C3N-01378 PDA miRNA-Seq tumor CPT0088230006 c637b37f-b474-4c0d-b7cf-91784955aef4_mirnaseq_gdc_realn.bam 264907202 BAM harmonized CPTAC3 5f667b93-d98e-4c2c-958a-4c793d0d5556 de75ca606c81ae3037fb5db05e684248 {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor"} -C3N-01378.REP_7cb76a7c.WXS.T C3N-01378 PDA WXS tumor CPT0088230009_1 CPT0088230009_1.WholeExome.RP-1303.bam 56826636253 BAM aligned CPTAC3 fd65b6f1-a645-4c90-a7af-3861bc88a086 974477388fe548de4f9ba08aa147f544 {"aliquot_tag": "REP_7cb76a7c", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.REP_7cb76a7c.WXS.T.hg38 C3N-01378 PDA WXS tumor CPT0088230009_1 5c5c012e-7eed-4f0d-bc77-1f9d3b74c574_wxs_gdc_realn.bam 77631328206 BAM harmonized CPTAC3 6822a588-19f2-42a7-94c8-7860778994db ac10041334f6105ff84f00ae1a9b0ff9 {"aliquot_tag": "REP_7cb76a7c", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01378.RNA-Seq.chimeric.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.chimeric.gdc_realn.bam 27870489 BAM chimeric harmonized CPTAC3 22abe3f7-5962-4a00-a660-73113685e25a fd532874f816c53e30675b976ccd2238 {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor"} -C3N-01378.RNA-Seq.genomic.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.genomic.gdc_realn.bam 8173233722 BAM genomic harmonized CPTAC3 011a5173-7f36-4266-a398-e0b25fa1ca2d 049afc3dc7e11d5059c630554031c20d {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor"} -C3N-01378.RNA-Seq.S14_L005_R1.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R1_001.fastq.gz 3535340645 FASTQ S14_L005_R1 unaligned CPTAC3 1f3641e2-c34d-4144-b61d-c5fa1b09ac2d 9adf95f219ad47df1197f5021398979e {"aliquot_tag": "ALQ_1bc674f1", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01378.RNA-Seq.S14_L005_R2.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R2_001.fastq.gz 3778168162 FASTQ S14_L005_R2 unaligned CPTAC3 1c52e376-7d8a-42f4-b736-40f51042129f e75ee4516515fc4069d68b8072eeb678 {"aliquot_tag": "ALQ_1bc674f1", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01378.RNA-Seq.transcriptome.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.transcriptome.gdc_realn.bam 10376676143 BAM transcriptome harmonized CPTAC3 c8c29822-8b74-42cd-8c48-3fe60e2eed19 2051a02a4e57341f3e8b22889960ab55 {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor"} -C3N-01378.WGS.N C3N-01378 PDA WGS blood_normal CPT0088250002 CPT0088250002.WholeGenome.RP-1303.bam 70584946865 BAM aligned CPTAC3 d9501b60-9542-4bca-9c9a-cdd731dd7538 1c3ebfbbb637535ba7402765338b817d {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal"} -C3N-01378.WGS.N.hg38 C3N-01378 PDA WGS blood_normal CPT0088250002 5c4b90b6-5f34-4f61-8ecc-ea373e4b3cb4_gdc_realn.bam 104923924743 BAM harmonized CPTAC3 4b7aae30-2635-416a-88f7-f909aa1e7eb7 9284defa40d42609837790b53ee53a8f {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal"} -C3N-01378.WXS.N C3N-01378 PDA WXS blood_normal CPT0088250002 CPT0088250002.WholeExome.RP-1303.bam 26483056425 BAM aligned CPTAC3 9786455c-dea1-4ad0-92c8-cdf85e8ffa9a 4dc9f1a4b7a97ab5595ce9e2aea8ce0f {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal"} -C3N-01378.WXS.N.hg38 C3N-01378 PDA WXS blood_normal CPT0088250002 5c4b90b6-5f34-4f61-8ecc-ea373e4b3cb4_gdc_realn.bam 35635702922 BAM harmonized CPTAC3 97059ea2-14f3-4daa-8c3b-bfd2555dc149 0f1b9a6461cde9a9de1089d22aa60fb3 {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal"} -C3N-01379.ANN_f8051ff3.MethArray.Green.T C3N-01379 PDA Methylation_Array tumor CPT0088840010 202184990013_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0a3a1ff9-ea3e-44e9-bfc2-60b73fdb2a68 2373a131ff57c3b786132a908ec81347 {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.ANN_f8051ff3.MethArray.Red.T C3N-01379 PDA Methylation_Array tumor CPT0088840010 202184990013_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 4d8455da-d08d-4a9c-9386-bf6080a46eea 34338ae56e8f3969e6729cd234abc1cd {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.ANN_f8051ff3.WGS.T C3N-01379 PDA WGS tumor CPT0088840010 CPT0088840010.WholeGenome.RP-1303.bam 77506684757 BAM aligned CPTAC3 b2896900-84be-49a9-8117-1fcfec81405f 82f3e7877c28ed7999d22b4ded523041 {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.ANN_f8051ff3.WGS.T.hg38 C3N-01379 PDA WGS tumor CPT0088840010 358e92fb-9223-4b81-bd63-65d54ca74472_gdc_realn.bam 116324970668 BAM harmonized CPTAC3 59c32a92-7edc-4765-86a8-1c1c69a544d1 cc1f642ea829bdf256ce513758125e50 {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.ANN_f8051ff3.WXS.T C3N-01379 PDA WXS tumor CPT0088840010 CPT0088840010.WholeExome.RP-1303.bam 31156709591 BAM aligned CPTAC3 c67ecd59-8d76-4287-b8b4-6ab12a838761 a8c56185c47b3bd3e4461d72374a90de {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.ANN_f8051ff3.WXS.T.hg38 C3N-01379 PDA WXS tumor CPT0088840010 358e92fb-9223-4b81-bd63-65d54ca74472_gdc_realn.bam 43144516005 BAM harmonized CPTAC3 f4baf547-994f-4251-b408-f54c033ebfa7 0273d0dd587c0e9bbc995e6183daa2ae {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.miRNA-Seq.S12_L008_R1.T C3N-01379 PDA miRNA-Seq tumor CPT0088840007 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L008_R1_001.unaln.bam 230932176 BAM S12_L008_R1 unaligned CPTAC3 7e48d40e-543a-4228-a066-3eb83fa37c3d e32debdcf29d94d336387095ccf61f9d {"aliquot_tag": "ALQ_7f7abb11", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01379.miRNA-Seq.T.hg38 C3N-01379 PDA miRNA-Seq tumor CPT0088840007 a859ebd7-9363-4609-b2a0-6e17a350fc52_mirnaseq_gdc_realn.bam 249707600 BAM harmonized CPTAC3 46065b0b-ce4e-4cb6-a5d1-f71f3890fba0 68c6a3c8405904e9b8cbf15103a5a675 {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor"} -C3N-01379.REP_9fbd14d0.Targeted.T C3N-01379 PDA Targeted_Sequencing tumor CPT0088840010_1 CPT0088840010_1.CustomSelection.RP-1303.PDO-18786.bam 5272955997 BAM aligned CPTAC3 0c7471b0-99fd-4aa8-9390-6cf8455f4049 589766f1130e392f8041fca8b71c6481 {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.REP_9fbd14d0.Targeted.T.hg38 C3N-01379 PDA Targeted_Sequencing tumor CPT0088840010_1 a163fbd1-97f0-44e8-8b1b-245624d0c527_targetedsequencing_gdc_realn.bam 7414529883 BAM harmonized CPTAC3 54859353-9a30-46f8-9e18-19fae0d798ed 190ce3ed5d64b8c1196efe7428725491 {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.REP_9fbd14d0.WXS.T C3N-01379 PDA WXS tumor CPT0088840010_1 CPT0088840010_1.WholeExome.RP-1303.bam 51096887089 BAM aligned CPTAC3 896a7a4e-917e-4c11-abb3-9c0c9053d7fa 1f33f0604b89a5215788b1d27c499e0c {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.REP_9fbd14d0.WXS.T.hg38 C3N-01379 PDA WXS tumor CPT0088840010_1 a163fbd1-97f0-44e8-8b1b-245624d0c527_wxs_gdc_realn.bam 70508072968 BAM harmonized CPTAC3 c69a480c-4977-4a71-96fe-1c54544db6e7 efb70d8a149112b44588c17fe0e46988 {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01379.RNA-Seq.chimeric.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.chimeric.gdc_realn.bam 32217807 BAM chimeric harmonized CPTAC3 f52b0f6d-c6ba-498d-adf3-d9865c0168ed bd484a265fa8c68dc2acdb0443e25275 {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor"} -C3N-01379.RNA-Seq.genomic.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.genomic.gdc_realn.bam 8724219339 BAM genomic harmonized CPTAC3 9b88ed8a-d52a-4ece-8dcb-e61581d181c4 8c4f7bf3daa2364bae506154f2f812d9 {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor"} -C3N-01379.RNA-Seq.S10_L007_R1.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R1_001.fastq.gz 4466540867 FASTQ S10_L007_R1 unaligned CPTAC3 d2df56fc-8a5f-4da4-989f-170e8a7f9c94 cdf8296920e3846fa9d687b2d452ca1b {"aliquot_tag": "ALQ_7f7abb11", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01379.RNA-Seq.S10_L007_R2.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R2_001.fastq.gz 4465225732 FASTQ S10_L007_R2 unaligned CPTAC3 480f8010-a045-4fec-93c9-3080eb0acc86 138ab6f305d5db392535c86e328e1796 {"aliquot_tag": "ALQ_7f7abb11", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01379.RNA-Seq.transcriptome.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.transcriptome.gdc_realn.bam 11587137428 BAM transcriptome harmonized CPTAC3 f57c34fb-0f56-4089-b4a1-cd35e91792cf 443942b78eccad585aa17030f0c44d4a {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor"} -C3N-01379.WGS.N C3N-01379 PDA WGS blood_normal CPT0088890001 CPT0088890001.WholeGenome.RP-1303.bam 72609021852 BAM aligned CPTAC3 64c6c23c-2369-4367-801c-0f855304c052 fe0cdc5aedd8d388a4b37478214cc64d {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal"} -C3N-01379.WGS.N.hg38 C3N-01379 PDA WGS blood_normal CPT0088890001 9d162609-b371-4d3b-9491-2b071868f2e1_gdc_realn.bam 109071745709 BAM harmonized CPTAC3 f70124a7-b4c8-4b64-accf-9a34cc635e3a f016c19f93778e7d424e54968698e749 {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal"} -C3N-01379.WXS.N C3N-01379 PDA WXS blood_normal CPT0088890001 CPT0088890001.WholeExome.RP-1303.bam 42473251354 BAM aligned CPTAC3 c4f3e388-9e29-4d40-9ee4-1e24e6530af7 7a5f6e875a10d66b743a54d09eaa0f09 {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal"} -C3N-01379.WXS.N.hg38 C3N-01379 PDA WXS blood_normal CPT0088890001 9d162609-b371-4d3b-9491-2b071868f2e1_gdc_realn.bam 58736206063 BAM harmonized CPTAC3 bf023e2d-7b85-4a0a-9a93-cdee2f4bf118 1e4b0050d1ac3063bedc025b2ff99f02 {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal"} -C3N-01380.ADD_235e6ff5.MethArray.Green.T C3N-01380 PDA Methylation_Array tumor CPT0088260010 202163550007_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 20df486d-a9c4-4ac8-b840-a1ec9c9a4d3c 27439d6ab207974bee294c22ad952f4d {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01380.ADD_235e6ff5.MethArray.Red.T C3N-01380 PDA Methylation_Array tumor CPT0088260010 202163550007_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6d3b4a7b-949f-487c-97ca-cac7222520d6 609fe85481f25b735f491e41455f64b9 {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01380.ADD_235e6ff5.WGS.T C3N-01380 PDA WGS tumor CPT0088260010 CPT0088260010.WholeGenome.RP-1303.bam 64112950220 BAM aligned CPTAC3 b0554a96-b25f-4492-a28f-08ff8cb3e0ac 7aed6f06c99c58a16b9445d092d6161e {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01380.ADD_235e6ff5.WGS.T.hg38 C3N-01380 PDA WGS tumor CPT0088260010 1a8d6818-f4d7-41a3-bd6c-fe47b6903200_gdc_realn.bam 97247490497 BAM harmonized CPTAC3 a36701b5-5233-479f-94e9-add8ed53b7e2 28871b49a6ad65af43003a45ef991833 {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01380.ADD_235e6ff5.WXS.T C3N-01380 PDA WXS tumor CPT0088260010 CPT0088260010.WholeExome.RP-1303.bam 35771944400 BAM aligned CPTAC3 01c7b559-cf2f-4008-ac18-341b0bba8615 99b4fb0794617f2900e3648ff7edc38d {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01380.ADD_235e6ff5.WXS.T.hg38 C3N-01380 PDA WXS tumor CPT0088260010 1a8d6818-f4d7-41a3-bd6c-fe47b6903200_gdc_realn.bam 49604077098 BAM harmonized CPTAC3 84697566-2ee3-4f9f-9b76-19f884bafd27 e868a59bff6a1ef5e3ed99bb905634ee {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01380.miRNA-Seq.S9_L008_R1.T C3N-01380 PDA miRNA-Seq tumor CPT0088260007 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L008_R1_001.unaln.bam 201245981 BAM S9_L008_R1 unaligned CPTAC3 784334e9-5638-4a8f-9f6c-ba1342bbaec1 8df7bbb7c77944046663275fc709d634 {"aliquot_tag": "ALQ_a421cb17", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01380.miRNA-Seq.T.hg38 C3N-01380 PDA miRNA-Seq tumor CPT0088260007 e24e5775-5795-4f87-b95b-e6ad6284712b_mirnaseq_gdc_realn.bam 223779343 BAM harmonized CPTAC3 2754e5af-3557-4d8f-97d4-0d5f94093c48 6d079f5bb5b772b9078919114c4359e1 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor"} -C3N-01380.RNA-Seq.chimeric.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.chimeric.gdc_realn.bam 36232678 BAM chimeric harmonized CPTAC3 02710637-3b79-493e-a343-6ef844c422d3 4072bae2734877640195f4c4523bbdc4 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor"} -C3N-01380.RNA-Seq.genomic.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.genomic.gdc_realn.bam 7917800435 BAM genomic harmonized CPTAC3 93a6be85-5c6d-4a09-ba43-263ed7949894 3ec9c1598157de75b852cd6c0e797867 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor"} -C3N-01380.RNA-Seq.S4_L001_R1.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3802894924 FASTQ S4_L001_R1 unaligned CPTAC3 ec0d2575-8b7c-4b7d-8e89-a472ee28eec6 0d95f4b996200a365a1dbd1c72224ed3 {"aliquot_tag": "ALQ_a421cb17", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01380.RNA-Seq.S4_L001_R2.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4114549069 FASTQ S4_L001_R2 unaligned CPTAC3 d6de1c45-d582-4677-abf6-3fe7ec0101db d04a823043887c6f17f26e8679ce17b6 {"aliquot_tag": "ALQ_a421cb17", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01380.RNA-Seq.transcriptome.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.transcriptome.gdc_realn.bam 11512078718 BAM transcriptome harmonized CPTAC3 62408860-452e-47bc-be41-732bfda6898b 8b84af27f9c576fbd06442ba248003d4 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor"} -C3N-01380.WGS.N C3N-01380 PDA WGS blood_normal CPT0088300002 CPT0088300002.WholeGenome.RP-1303.bam 64652874371 BAM aligned CPTAC3 ff9ea438-f289-48ce-bb6e-29c9c35d3cd0 b8368df7819498a8f1af1e6130869766 {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01380.WGS.N.hg38 C3N-01380 PDA WGS blood_normal CPT0088300002 2067ab53-1961-44eb-be0e-f45c0455aa68_gdc_realn.bam 96307704857 BAM harmonized CPTAC3 c0939d37-8ae9-4f0e-a4d7-c4b43a178f19 48d912561f57aa4cf60687ad993dae29 {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01380.WXS.N C3N-01380 PDA WXS blood_normal CPT0088300002 CPT0088300002.WholeExome.RP-1303.bam 27979562421 BAM aligned CPTAC3 f209fca0-cbfc-405d-a850-10a33196ced2 ac20be1c1ec81acfc7b9abf2bd0530c0 {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01380.WXS.N.hg38 C3N-01380 PDA WXS blood_normal CPT0088300002 2067ab53-1961-44eb-be0e-f45c0455aa68_gdc_realn.bam 37912026073 BAM harmonized CPTAC3 dc58f100-c805-4bfd-b7bf-099b134d5355 0f74bbb060b4f7f33a611431ddaf2c6b {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01380.WXS.T C3N-01380 PDA WXS tumor CPT0088260010_1 CPT0088260010_1.WholeExome.RP-1303.bam 59273893283 BAM aligned CPTAC3 64694500-12f3-4191-81c9-5d422b9556f7 1bb67949608f5de8d7bc71162a1ce322 {"aliquot_tag": "ALQ_99e21931", "gdc_sample_type": "Primary Tumor"} -C3N-01380.WXS.T.hg38 C3N-01380 PDA WXS tumor CPT0088260010_1 04f52594-db73-49d9-a615-6b08a12bd361_wxs_gdc_realn.bam 82121699101 BAM harmonized CPTAC3 1937ad57-852b-4924-9d72-82a51a3c3005 e40c31b28e18687c668bc43a76c58d13 {"aliquot_tag": "ALQ_99e21931", "gdc_sample_type": "Primary Tumor"} -C3N-01381.MethArray.Green.T C3N-01381 PDA Methylation_Array tumor CPT0094130010 202234380024_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8311a8e3-65c5-41d1-8ecd-6d2c81e1091f 44454b8fc85fca513f18a2f5c46d2de8 {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor"} -C3N-01381.MethArray.Red.T C3N-01381 PDA Methylation_Array tumor CPT0094130010 202234380024_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 e817bc6b-c074-4ebf-9863-53753e4354ee b1bb72566f97f3acfe907b9190f9fe68 {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor"} -C3N-01381.miRNA-Seq.S29_L007_R1.T C3N-01381 PDA miRNA-Seq tumor CPT0094130007 180828_UNC32-K00270_0112_AHWTLNBBXX_TCGAAG_S29_L007_R1_001.unaln.bam 153502345 BAM S29_L007_R1 unaligned CPTAC3 d5121478-dea8-48e2-b934-8619aff6ca5c b3d98555f480aff02c5ade5b6471a8a9 {"aliquot_tag": "ALQ_e15f5c23", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01381.miRNA-Seq.T.hg38 C3N-01381 PDA miRNA-Seq tumor CPT0094130007 35eb68fa-7867-402e-bf76-b40739f5e337_mirnaseq_gdc_realn.bam 172426725 BAM harmonized CPTAC3 03f407e6-8bf7-4b0e-886c-73e700829e49 7895966da157d4b494841f575c5cb64f {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor"} -C3N-01381.RNA-Seq.chimeric.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.chimeric.gdc_realn.bam 37813790 BAM chimeric harmonized CPTAC3 fbb3c774-e500-4a78-898f-5511607ed243 5f7cf9e1c26c97287c380a6ab2e61800 {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor"} -C3N-01381.RNA-Seq.genomic.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.genomic.gdc_realn.bam 9500416436 BAM genomic harmonized CPTAC3 ad81b370-f623-4e05-aa6e-ba5592e7bc5c 333a0dd056ead4044f75b754b47b09d4 {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor"} -C3N-01381.RNA-Seq.S22_L007_R1.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R1_001.fastq.gz 4137102742 FASTQ S22_L007_R1 unaligned CPTAC3 3d2f71c7-ee5c-4048-8b56-aa90f92ec9f3 8612f2f7ae23768a5c89821f5452c139 {"aliquot_tag": "ALQ_e15f5c23", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01381.RNA-Seq.S22_L007_R2.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R2_001.fastq.gz 4378756240 FASTQ S22_L007_R2 unaligned CPTAC3 a83cfe92-7f82-4fac-8815-11c49562e59d 02c96e92c7ab941b8d27e9e98ac5f8ce {"aliquot_tag": "ALQ_e15f5c23", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01381.RNA-Seq.transcriptome.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.transcriptome.gdc_realn.bam 10860409878 BAM transcriptome harmonized CPTAC3 c7432bcf-9fff-4ce5-b7ae-00d6f35f39d5 eda08f2cc4a718634c61e3fcb83b8d2f {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor"} -C3N-01381.WGS.N C3N-01381 PDA WGS blood_normal CPT0094170002 CPT0094170002.WholeGenome.RP-1303.bam 67383714619 BAM aligned CPTAC3 caef7227-8a1e-4974-96d9-3c14bd5d1bca 553e2e3669883c95fb18f978c1eb01aa {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01381.WGS.N.hg38 C3N-01381 PDA WGS blood_normal CPT0094170002 ca006e8d-b3d7-4bcc-a0a2-f0c274572f6c_wgs_gdc_realn.bam 100708359366 BAM harmonized CPTAC3 1bc1098d-01cf-4166-9e4b-baadf195614a 1eb3cb8d52c3a4e5429a60dba982d560 {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01381.WGS.T C3N-01381 PDA WGS tumor CPT0094130010 CPT0094130010.WholeGenome.RP-1303.bam 67586075404 BAM aligned CPTAC3 21db278d-8c7d-4e57-badc-fcd7392de277 35518a524fece5e18afa0a82747860f3 {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor"} -C3N-01381.WGS.T.hg38 C3N-01381 PDA WGS tumor CPT0094130010 fa5ac453-7220-4531-8343-76dfb5b394d3_wgs_gdc_realn.bam 100189004417 BAM harmonized CPTAC3 6e703ac2-2371-4dfa-92fc-265c2a718923 34a3d1b829bdaab2a1f58a8f9c41d00f {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor"} -C3N-01381.WXS.N C3N-01381 PDA WXS blood_normal CPT0094170002 CPT0094170002.WholeExome.RP-1303.bam 34936869207 BAM aligned CPTAC3 b90d11c5-c704-4978-b880-4fcbce41f324 eb8da5127a7dee3b3b7b059ab09bbfbd {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01381.WXS.N.hg38 C3N-01381 PDA WXS blood_normal CPT0094170002 ca006e8d-b3d7-4bcc-a0a2-f0c274572f6c_wxs_gdc_realn.bam 48405589111 BAM harmonized CPTAC3 74f08f4a-f4f4-4a2e-bfec-eced98b55d65 c9b2f8c1276e3ae4c99a4e3d3a8b78e0 {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01381.WXS.T C3N-01381 PDA WXS tumor CPT0094130010_1 CPT0094130010_1.WholeExome.RP-1303.bam 62690134232 BAM aligned CPTAC3 c85cfa79-90c2-428c-8b6c-fe87dee4cd11 476322224e79c58cf4149e1a090a26f0 {"aliquot_tag": "ALQ_4ca3a95f", "gdc_sample_type": "Primary Tumor"} -C3N-01381.WXS.T C3N-01381 PDA WXS tumor CPT0094130010 CPT0094130010.WholeExome.RP-1303.bam 33607778395 BAM aligned CPTAC3 1a989c83-42c8-49bb-8ade-11ee4936903f 7a8bf076a1aba263ac68feee5f47254c {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor"} -C3N-01381.WXS.T.hg38 C3N-01381 PDA WXS tumor CPT0094130010_1 9ef2e136-4bb4-4260-a7e4-b138acea7b04_wxs_gdc_realn.bam 86016930427 BAM harmonized CPTAC3 a017c7b2-ae0b-4305-8562-0b7b22c8e8ff 81765278a4a0f46397ad0a43555dae33 {"aliquot_tag": "ALQ_4ca3a95f", "gdc_sample_type": "Primary Tumor"} -C3N-01381.WXS.T.hg38 C3N-01381 PDA WXS tumor CPT0094130010 fa5ac453-7220-4531-8343-76dfb5b394d3_wxs_gdc_realn.bam 46654123884 BAM harmonized CPTAC3 2215497a-f173-49ba-ba51-2ac92c26791a f880603b9beab6fbc472e038ed48f65d {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor"} -C3N-01382.MethArray.Green.T C3N-01382 PDA Methylation_Array tumor CPT0094180009 202234370119_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fc2bcf3c-5d16-4ff3-9b3a-c515f6a641ab 6beaaf9ab014048844b4b8e2ec0177ab {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor"} -C3N-01382.MethArray.Red.T C3N-01382 PDA Methylation_Array tumor CPT0094180009 202234370119_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 cc1564d8-21be-450a-a8ff-1024fb65c789 4a094fc26e014990f8ff870386ec9f59 {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor"} -C3N-01382.miRNA-Seq.S28_L007_R1.T C3N-01382 PDA miRNA-Seq tumor CPT0094180006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCGGCA_S28_L007_R1_001.unaln.bam 170595078 BAM S28_L007_R1 unaligned CPTAC3 ee2223d0-4d9c-4b73-bb6d-ecf28fac14df 2d5034c35970991955c168ece141df8c {"aliquot_tag": "ALQ_e1885da4", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01382.miRNA-Seq.T.hg38 C3N-01382 PDA miRNA-Seq tumor CPT0094180006 2175ca8c-4f7a-466f-8adc-6d084f5ad60f_mirnaseq_gdc_realn.bam 192142620 BAM harmonized CPTAC3 9186f778-53ef-4196-ba94-6c75f4fb9615 9132e6767de7a71c8341a5155c898068 {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor"} -C3N-01382.RNA-Seq.chimeric.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.chimeric.gdc_realn.bam 30332158 BAM chimeric harmonized CPTAC3 adae2836-7ece-4f9f-b7b1-ba7d1aced942 3aa0ff22c6e7566c743ac9141946fc47 {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor"} -C3N-01382.RNA-Seq.genomic.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.genomic.gdc_realn.bam 8387368398 BAM genomic harmonized CPTAC3 b2d49af0-25a0-4b86-9bae-b64063d76810 2e34ddc6750a0427eb34f15d983283a7 {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor"} -C3N-01382.RNA-Seq.S23_L007_R1.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R1_001.fastq.gz 3671703287 FASTQ S23_L007_R1 unaligned CPTAC3 7f004367-61a4-4947-b979-d566027ccff3 a99614e507b74a39a88a617f82126ab2 {"aliquot_tag": "ALQ_e1885da4", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01382.RNA-Seq.S23_L007_R2.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R2_001.fastq.gz 3950980653 FASTQ S23_L007_R2 unaligned CPTAC3 dc54c3f6-54c2-42ec-bea0-2faa46a88684 a99a9fd05054287aa8d91af1b4338c7f {"aliquot_tag": "ALQ_e1885da4", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01382.RNA-Seq.transcriptome.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.transcriptome.gdc_realn.bam 10432685066 BAM transcriptome harmonized CPTAC3 a608a823-3517-4136-b081-8d803eb49253 ed64294ad2c15b0c457e03c06b1bc04d {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor"} -C3N-01382.Targeted.T C3N-01382 PDA Targeted_Sequencing tumor CPT0094180009_1 CPT0094180009_1.CustomSelection.RP-1303.PDO-18786.bam 3020848472 BAM aligned CPTAC3 3cb1732f-7645-4880-aa90-ed0302aaecc3 f59d8461ae9eb56adc6920b52ce169bc {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor"} -C3N-01382.Targeted.T.hg38 C3N-01382 PDA Targeted_Sequencing tumor CPT0094180009_1 716a0ff5-1a12-4918-8722-0a0961742aca_targetedsequencing_gdc_realn.bam 4275003724 BAM harmonized CPTAC3 846e60ad-8d47-4e2e-a5bb-db5c166ff39a 6dd2aa5a45b3a9a7d82cb9a43495d26b {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor"} -C3N-01382.WGS.N C3N-01382 PDA WGS blood_normal CPT0094220002 CPT0094220002.WholeGenome.RP-1303.bam 53717266052 BAM aligned CPTAC3 743345c6-8534-4b0d-b206-49600a064f3f 045b9f714c7ec6f7b33b4089a2749090 {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01382.WGS.N.hg38 C3N-01382 PDA WGS blood_normal CPT0094220002 63bb2240-6304-4145-a676-3a947fd33ed8_wgs_gdc_realn.bam 81628804527 BAM harmonized CPTAC3 85740044-8acb-4c6f-a3f9-bc53d37e4f00 8496bb8f62ef152cbed441e4301c5288 {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01382.WGS.T C3N-01382 PDA WGS tumor CPT0094180009 CPT0094180009.WholeGenome.RP-1303.bam 62209265396 BAM aligned CPTAC3 76d54210-ce38-4280-b315-f04210e16cdc 3966b358c69426e898c275e9c0465a6f {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor"} -C3N-01382.WGS.T.hg38 C3N-01382 PDA WGS tumor CPT0094180009 c65dc830-7f92-420a-9f37-cda5c532bad5_wgs_gdc_realn.bam 91217785071 BAM harmonized CPTAC3 dc49827e-1460-48c2-a337-89def4e28e1e 0fe2b4f41b0b2dd70fec36ed5e7f287b {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor"} -C3N-01382.WXS.N C3N-01382 PDA WXS blood_normal CPT0094220002 CPT0094220002.WholeExome.RP-1303.bam 31200698268 BAM aligned CPTAC3 f8d0fba5-ef37-430e-9b93-59494f222b0d 43fbae2ddca759be6c778341f156979b {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01382.WXS.N.hg38 C3N-01382 PDA WXS blood_normal CPT0094220002 63bb2240-6304-4145-a676-3a947fd33ed8_wxs_gdc_realn.bam 41616147219 BAM harmonized CPTAC3 73e1e505-6379-406d-90f6-59dcd495bf78 37754527a5ea08c3e8c040d6124d5100 {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01382.WXS.T C3N-01382 PDA WXS tumor CPT0094180009_1 CPT0094180009_1.WholeExome.RP-1303.bam 56771916709 BAM aligned CPTAC3 1d9197df-a15c-425a-8097-5fcb1c618054 a3a10a937d4d7be375185b071ef996ea {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor"} -C3N-01382.WXS.T C3N-01382 PDA WXS tumor CPT0094180009 CPT0094180009.WholeExome.RP-1303.bam 28303119047 BAM aligned CPTAC3 f9252153-12fb-4f8b-8984-7f443c7f6e60 44e10c3f25dda5f6698c4d609fb33add {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor"} -C3N-01382.WXS.T.hg38 C3N-01382 PDA WXS tumor CPT0094180009_1 716a0ff5-1a12-4918-8722-0a0961742aca_wxs_gdc_realn.bam 78131155862 BAM harmonized CPTAC3 263edada-8cb7-4dbb-b2db-695f3969f3c5 8bb4461910bbd693f70f9fbb08b35910 {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor"} -C3N-01382.WXS.T.hg38 C3N-01382 PDA WXS tumor CPT0094180009 c65dc830-7f92-420a-9f37-cda5c532bad5_wxs_gdc_realn.bam 39373032176 BAM harmonized CPTAC3 3b42b6c8-883b-4f37-9ef8-20a7bdc9d54b 2becdaddd0e53ee181914fe4cc9eb20f {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor"} -C3N-01383.MethArray.Green.T C3N-01383 PDA Methylation_Array tumor CPT0094230010 202234380102_R03C01_Grn.idat 13676232 IDAT Green NA CPTAC3 d3b920f4-066c-4d21-ae77-e6cf6298dbc0 3eeb32cf9d95fec3aed06d8ddf0bce86 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor"} -C3N-01383.MethArray.Red.T C3N-01383 PDA Methylation_Array tumor CPT0094230010 202234380102_R03C01_Red.idat 13676232 IDAT Red NA CPTAC3 d33cc5bc-5134-4dc1-bfa6-66f4289f7493 8cbaee3ed7f54d38ef9a75252e1e79d5 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor"} -C3N-01383.miRNA-Seq.S19_L008_R1.T C3N-01383 PDA miRNA-Seq tumor CPT0094230007 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L008_R1_001.unaln.bam 217395673 BAM S19_L008_R1 unaligned CPTAC3 806ee726-da57-4323-a3a8-44d883b359d3 e669099b8b2b6aec6df9b667ea5e91a0 {"aliquot_tag": "ALQ_67cb2e8d", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01383.miRNA-Seq.T.hg38 C3N-01383 PDA miRNA-Seq tumor CPT0094230007 49cf8729-f504-4924-b59c-0dc25a1f8ec5_mirnaseq_gdc_realn.bam 243541612 BAM harmonized CPTAC3 a309309f-1345-4e05-9bc8-8a221f59cc19 21562e8b2d203f5ad754d55eaa0686b5 {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01383.RNA-Seq.chimeric.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.chimeric.gdc_realn.bam 78609569 BAM chimeric harmonized CPTAC3 cb4265c3-5b98-4596-a8b8-eeda70b47c1a 6ecfdd1a02ecfadd5dacbac01248184a {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01383.RNA-Seq.genomic.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.genomic.gdc_realn.bam 6908381416 BAM genomic harmonized CPTAC3 e6c8c765-6bca-4736-bec7-e8bc5bcdfe3b 06480b1c6a8ffc3ce7027cf094e3a455 {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01383.RNA-Seq.S62_L008_R1.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R1_001.fastq.gz 3141757925 FASTQ S62_L008_R1 unaligned CPTAC3 4aafb23a-721d-4b1e-8870-b7720430d5b4 108a6b744a34d413c9d9c42e8b9eb02a {"aliquot_tag": "ALQ_67cb2e8d", "sample": "S62", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01383.RNA-Seq.S62_L008_R2.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R2_001.fastq.gz 3227545193 FASTQ S62_L008_R2 unaligned CPTAC3 20ee2a89-2e2a-4d7e-8720-aea154e103ee 00c685fd5353e9d9031ce17182a42242 {"aliquot_tag": "ALQ_67cb2e8d", "sample": "S62", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01383.RNA-Seq.transcriptome.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.transcriptome.gdc_realn.bam 8513872118 BAM transcriptome harmonized CPTAC3 2cbc7df3-30df-4747-b471-f2ae936f025f 026ac4c0dfac3f17a8f3ae3ba5c6091b {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01383.WGS.N C3N-01383 PDA WGS blood_normal CPT0094270002 CPT0094270002.WholeGenome.RP-1303.bam 69143468893 BAM aligned CPTAC3 d4706d1d-186f-462f-9549-d32a8fa0eaf8 9e036bf65484c778d92360653ab502f5 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01383.WGS.N.hg38 C3N-01383 PDA WGS blood_normal CPT0094270002 004f4cdd-b07f-4986-83ec-2288789ae627_wgs_gdc_realn.bam 101919368086 BAM harmonized CPTAC3 f9baed66-1006-4294-b2c3-6228c7f4087f 021233cd75eb056166901bc66c92eb87 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01383.WGS.T C3N-01383 PDA WGS tumor CPT0094230010 CPT0094230010.WholeGenome.RP-1303.bam 64211961133 BAM aligned CPTAC3 a7f353f4-010c-4028-a890-4588a2e0064a b06a1c1fe73e3efe46a0ba0150371058 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor"} -C3N-01383.WGS.T.hg38 C3N-01383 PDA WGS tumor CPT0094230010 84eb0d82-6640-4db2-a981-44810476cca7_wgs_gdc_realn.bam 94941459212 BAM harmonized CPTAC3 6ef5cb72-ab1c-47c0-85f1-23c81e99187e 8dc91a0d39411ce42cf3d1070a4b49e7 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor"} -C3N-01383.WXS.N C3N-01383 PDA WXS blood_normal CPT0094270002 CPT0094270002.WholeExome.RP-1303.bam 32856834167 BAM aligned CPTAC3 cc19968f-6e30-4527-b66d-366940a41370 5640774656617e2a402891b2f077c896 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01383.WXS.N.hg38 C3N-01383 PDA WXS blood_normal CPT0094270002 004f4cdd-b07f-4986-83ec-2288789ae627_wxs_gdc_realn.bam 45129679541 BAM harmonized CPTAC3 5fd54386-ddcc-48bc-8837-77f3107979fb 160e850395414bbecc845297cb2faf64 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01383.WXS.T C3N-01383 PDA WXS tumor CPT0094230010_1 CPT0094230010_1.WholeExome.RP-1303.bam 57192231159 BAM aligned CPTAC3 d3f25d43-c678-4a66-9485-47ff3a1b9cf9 391f291d8a0e2700033e3b713eb5704f {"aliquot_tag": "ALQ_c22caebc", "gdc_sample_type": "Primary Tumor"} -C3N-01383.WXS.T C3N-01383 PDA WXS tumor CPT0094230010 CPT0094230010.WholeExome.RP-1303.bam 33550097648 BAM aligned CPTAC3 1185b335-7de3-4b81-a782-0517d9ee4a90 2877d811cc7491fd9714dd671ecd6c39 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor"} -C3N-01383.WXS.T.hg38 C3N-01383 PDA WXS tumor CPT0094230010_1 75bb8fa6-86ac-434f-afd7-12332afe19f1_wxs_gdc_realn.bam 78814281670 BAM harmonized CPTAC3 1981d72f-4966-4b2c-9ee7-845c9791f6d9 728c5b3861b1f07552fd9bf872fcf35d {"aliquot_tag": "ALQ_c22caebc", "gdc_sample_type": "Primary Tumor"} -C3N-01383.WXS.T.hg38 C3N-01383 PDA WXS tumor CPT0094230010 84eb0d82-6640-4db2-a981-44810476cca7_wxs_gdc_realn.bam 46403245903 BAM harmonized CPTAC3 1c05d345-e7e0-4082-a3b3-f60c51ffe779 154930efd7d8f6074e5614a93485ff6e {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor"} -C3N-01385.ANN_1fce52dd.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.chimeric.gdc_realn.bam 226207500 BAM chimeric harmonized CPTAC3 cdc1018d-8a77-45b4-868e-5a9cf4e98bc8 bad284ba4f1cb7160fff2ab1a777e14f {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.ANN_1fce52dd.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.genomic.gdc_realn.bam 13718131555 BAM genomic harmonized CPTAC3 95192e38-4089-4992-9714-15e6341f32e8 fc785285f0d541cf5bfb81d91e070149 {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.ANN_1fce52dd.RNA-Seq.S12_L008_R1.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R1_001.fastq.gz 4922822305 FASTQ S12_L008_R1 unaligned CPTAC3 4799b1ce-1a07-4ab4-a176-22371dbfbba7 e40d4a33f316383866d4af07cfbf7e9a {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01385.ANN_1fce52dd.RNA-Seq.S12_L008_R2.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R2_001.fastq.gz 5749298642 FASTQ S12_L008_R2 unaligned CPTAC3 6b5fe0a9-edcc-4108-86a3-d2f6c034e8cf 4429ae00d936c07b0072846ab6237749 {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01385.ANN_1fce52dd.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.transcriptome.gdc_realn.bam 12920665947 BAM transcriptome harmonized CPTAC3 52428fb9-9b94-4d37-8277-16bf870b3371 f9bbca53831b9f2821048dd8fd4c7244 {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_372589e6.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.chimeric.gdc_realn.bam 359260558 BAM chimeric harmonized CPTAC3 76f6802a-bd8b-421d-bd20-ee975632472c a0939de1d3bae16876f220467c0c9cc3 {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_372589e6.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.genomic.gdc_realn.bam 9625668394 BAM genomic harmonized CPTAC3 a945d670-4c9f-43fc-ad70-2a55e91ac42a d3d3fcd6c5f9f105d11da15c8a48c811 {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_372589e6.RNA-Seq.S22_L007_R1.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 4090842586 FASTQ S22_L007_R1 unaligned CPTAC3 4d478481-1d87-42c7-84a4-4fe6a10af11e 531494711a9f323896eaa161207048be {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_372589e6.RNA-Seq.S22_L007_R2.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4485418671 FASTQ S22_L007_R2 unaligned CPTAC3 834c0da9-860f-4786-b9c4-e284f94aafd3 59bc5bdca8f55f5d4e63bcd8490cc0fb {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_372589e6.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.transcriptome.gdc_realn.bam 10501613940 BAM transcriptome harmonized CPTAC3 47dfaee1-5d2e-41ff-8d98-13d1b3434611 2874e03957ebf61d42ad3b99ac8575b8 {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_474f7d69.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.chimeric.gdc_realn.bam 311818603 BAM chimeric harmonized CPTAC3 2536675f-fc6e-497e-9d3b-04d92808b820 9e62786c0bfd6e9e7808c8951be3a4c8 {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_474f7d69.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.genomic.gdc_realn.bam 9278738172 BAM genomic harmonized CPTAC3 2f15cfd5-a1c6-4b4e-8d38-6830695f665b 5b29715a1a1007f0ec3b2fe8c382156e {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_474f7d69.RNA-Seq.S2_L004_R1.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R1_001.fastq.gz 4147996894 FASTQ S2_L004_R1 unaligned CPTAC3 6754775d-8884-41a2-9936-3eb2eda29880 90699fdcc948b05ce736b67a622c0d6d {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_474f7d69.RNA-Seq.S2_L004_R2.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R2_001.fastq.gz 4437956168 FASTQ S2_L004_R2 unaligned CPTAC3 4868e68c-f845-4d95-96cb-26fb4792d981 8409828892bd32256b640e99dfbbaad9 {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_474f7d69.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.transcriptome.gdc_realn.bam 12085857456 BAM transcriptome harmonized CPTAC3 578953f3-fc7c-4276-ae06-05f09fd1cb65 2bcd6625a7429fbc809d161610ac6e5e {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_78641f21.WXS.T C3N-01385 PDA WXS tumor CPT0162230034 CPT0162230034.WholeExome.RP-1303.bam 22816485192 BAM aligned CPTAC3 da32c776-50a1-4373-a4c2-5b8befbd9122 207c3389286de36ec40420c50710b18e {"aliquot_tag": "DUP_78641f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_78641f21.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230034 2fa1cac6-09d3-406e-beb5-a1aba56cad25_wxs_gdc_realn.bam 31451370608 BAM harmonized CPTAC3 5b16b6f6-21e2-4afa-aa5f-e8a8125fbc8e b2881ce35f4179253c4ae25299a995c4 {"aliquot_tag": "DUP_78641f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_966a7e0d.WXS.T C3N-01385 PDA WXS tumor CPT0162230036 CPT0162230036.WholeExome.RP-1303.bam 26161139730 BAM aligned CPTAC3 e1b5f91a-5928-4da3-81d8-a01557a0aa4e bcdec209441a8672cd6bc3aa356f298e {"aliquot_tag": "DUP_966a7e0d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_966a7e0d.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230036 6d940223-932d-461f-beb3-6d67db47e55a_wxs_gdc_realn.bam 36220976322 BAM harmonized CPTAC3 1ca05fe4-bece-4c80-a094-6019cee40817 95bb08fcc16627d21cd0aaf194a212c1 {"aliquot_tag": "DUP_966a7e0d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_c80f88c9.RNA-Seq.chimeric.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.chimeric.gdc_realn.bam 493712376 BAM chimeric harmonized CPTAC3 5e87a61e-b877-46da-95f4-eb00a7e2ca6a a1684d8122ff7106a947afa8ecff7bc7 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_c80f88c9.RNA-Seq.genomic.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.genomic.gdc_realn.bam 10071795458 BAM genomic harmonized CPTAC3 cafcc6fd-dc05-47f3-83c5-9c96f3ce1ddc bf2afc29fe17eb769032b23a278bddb9 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_c80f88c9.RNA-Seq.S21_L007_R1.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4629280859 FASTQ S21_L007_R1 unaligned CPTAC3 644d96f4-48fe-4542-a0a2-4d8c57c9e30f 4ef20835275ed5fe03aa6e0812a9e349 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_c80f88c9.RNA-Seq.S21_L007_R2.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4962339053 FASTQ S21_L007_R2 unaligned CPTAC3 cb401ca0-5cd6-4ce5-aebd-4b551f5a80d8 0b390d69899fe7987fbc8ca790747837 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_c80f88c9.RNA-Seq.transcriptome.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.transcriptome.gdc_realn.bam 11383955527 BAM transcriptome harmonized CPTAC3 bb161611-c22f-4055-a3a7-7417b5c61d37 40fe7021e7247778ab089326fb3ea749 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_f09af176.WXS.N C3N-01385 PDA WXS blood_normal CPT0162290002 CPT0162290002.WholeExome.RP-1303.bam 25869310081 BAM aligned CPTAC3 e1b37e53-40cc-49b6-b6b2-f61346178321 b0f22a45b963395aee654be5cef8d532 {"aliquot_tag": "DUP_f09af176", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-01385.DUP_f09af176.WXS.N.hg38 C3N-01385 PDA WXS blood_normal CPT0162290002 2efe54c6-fdcb-45cc-ae06-81f1cf61b2a4_wxs_gdc_realn.bam 35784079661 BAM harmonized CPTAC3 7866fc75-788c-4deb-82d1-a43664538634 064a57e2161225d87cfe4ca532fc543e {"aliquot_tag": "DUP_f09af176", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-01385.DUP_f632fb7.WXS.T C3N-01385 PDA WXS tumor CPT0162230035 CPT0162230035.WholeExome.RP-1303.bam 27689153191 BAM aligned CPTAC3 94a94d49-63d9-44c2-84a8-17556f036fd4 0c2ea9f5720983d3f09e9aa1db8d1868 {"aliquot_tag": "DUP_f632fb7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_f632fb7.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230035 baa11028-3f28-4117-bbb7-0f9803198041_wxs_gdc_realn.bam 38644917533 BAM harmonized CPTAC3 2d352beb-1df6-4761-8407-fab451d80e21 c68969b77681d989b50f06c7280575f7 {"aliquot_tag": "DUP_f632fb7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01385.DUP_fe92a6aa.RNA-Seq.chimeric.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.chimeric.gdc_realn.bam 295938002 BAM chimeric harmonized CPTAC3 779c4eec-e201-4968-a777-589320794991 d83fbafdabdfcb5b9d5b56ec0d0e7994 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_fe92a6aa.RNA-Seq.genomic.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.genomic.gdc_realn.bam 10584499058 BAM genomic harmonized CPTAC3 f8a7bd29-c603-4e0a-b2c0-73682aae56a0 be8264157933a89e85961a759013f166 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_fe92a6aa.RNA-Seq.S4_L004_R1.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R1_001.fastq.gz 4650700932 FASTQ S4_L004_R1 unaligned CPTAC3 ad698e55-b953-44e1-8faf-7e53aff97f22 efdcf8728560ba5d9be657d1fac32957 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_fe92a6aa.RNA-Seq.S4_L004_R2.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R2_001.fastq.gz 4756392003 FASTQ S4_L004_R2 unaligned CPTAC3 aa32ebc3-a36d-415e-ba0d-4e06836a9747 9a16f0d1a6b673e6d3aecf36982b33d4 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01385.DUP_fe92a6aa.RNA-Seq.transcriptome.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.transcriptome.gdc_realn.bam 11476726041 BAM transcriptome harmonized CPTAC3 cd0ce9e2-0231-4123-8db0-305233140b2d 6ddb06e1a8bece721320b72e9cf5d44d {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01388.MethArray.Green.T C3N-01388 PDA Methylation_Array tumor CPT0088320009 202178770079_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 40305a71-642d-4f9b-9a57-75afad6e456c f46eb3c1df3fcf5e5a974866592e7470 {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor"} -C3N-01388.MethArray.Red.T C3N-01388 PDA Methylation_Array tumor CPT0088320009 202178770079_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 0b33687a-fbe4-41e3-be90-b1a254a60172 dd7300f687d0023060df6bb8123b5863 {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor"} -C3N-01388.miRNA-Seq.S10_L008_R1.T C3N-01388 PDA miRNA-Seq tumor CPT0088320006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L008_R1_001.unaln.bam 270159749 BAM S10_L008_R1 unaligned CPTAC3 b245afc2-1540-4b04-8cc3-a4bf672396c7 ed2f88d594cfd15afd7331c994375fc3 {"aliquot_tag": "ALQ_edfa8ee4", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01388.miRNA-Seq.T.hg38 C3N-01388 PDA miRNA-Seq tumor CPT0088320006 7ef9601d-289f-47bf-9c03-a85cfd6627a4_mirnaseq_gdc_realn.bam 292719523 BAM harmonized CPTAC3 4f3c87ca-12d0-4312-9c85-7969e1b70dcd 95258ea02b2ecf659a8ec14091d36431 {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor"} -C3N-01388.RNA-Seq.chimeric.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.chimeric.gdc_realn.bam 30446550 BAM chimeric harmonized CPTAC3 6ad23eb1-50d3-41a1-8439-8c7f7e8b6516 28ac569e8ab9f3cdd10b05288539470a {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor"} -C3N-01388.RNA-Seq.genomic.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.genomic.gdc_realn.bam 7060171934 BAM genomic harmonized CPTAC3 dce7c09e-ce8f-4543-b786-4bad5635369e 1690c7830743b27208aa120e336f1b14 {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor"} -C3N-01388.RNA-Seq.S18_L007_R1.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R1_001.fastq.gz 3565947301 FASTQ S18_L007_R1 unaligned CPTAC3 d6d68e19-e2e3-4034-9028-33b91eb7b2e6 ce2f1e19d2f0984d79652f0721569480 {"aliquot_tag": "ALQ_edfa8ee4", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01388.RNA-Seq.S18_L007_R2.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R2_001.fastq.gz 3689156636 FASTQ S18_L007_R2 unaligned CPTAC3 1f860ad4-f10d-4483-b625-33ef1a384b81 86f3d8f4dcf610df213857e6ae0112e0 {"aliquot_tag": "ALQ_edfa8ee4", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01388.RNA-Seq.transcriptome.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.transcriptome.gdc_realn.bam 10524855961 BAM transcriptome harmonized CPTAC3 d36115e7-21ea-4fd5-a2d6-cc677bd437cf 6011a692fc3a0edf80574c064b406c8e {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WGS.N C3N-01388 PDA WGS blood_normal CPT0088350002 CPT0088350002.WholeGenome.RP-1303.bam 70002234862 BAM aligned CPTAC3 383f4e44-e015-482d-9d36-cce01bf68945 9eace5614533840ea77aed87740cf55d {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01388.WGS.N.hg38 C3N-01388 PDA WGS blood_normal CPT0088350002 00c9c2c4-17af-41f7-8b2c-52691ddfbb17_gdc_realn.bam 106505980286 BAM harmonized CPTAC3 c44aedac-c110-49ff-a483-a5befa42f851 d4d3c85f4f1bcbd3529eecbfe459990a {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01388.WGS.T C3N-01388 PDA WGS tumor CPT0088320009_1 CPT0088320009_1.WholeGenome.RP-1303.bam 160963480606 BAM aligned CPTAC3 cfee462b-ce89-4434-a0c5-146c77b47e20 771a095e2813254e4ef31fc4546bbba1 {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WGS.T C3N-01388 PDA WGS tumor CPT0088320009 CPT0088320009.WholeGenome.RP-1303.bam 100475451765 BAM aligned CPTAC3 4fbe3505-1639-49d8-ad6b-dd3d8131c6f9 bf464f4776bb3ab8b94c74f495c2a83c {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WGS.T.hg38 C3N-01388 PDA WGS tumor CPT0088320009_1 ff400a50-05bf-4e12-8e8d-8cc536ad958f_wgs_gdc_realn.bam 241161258390 BAM harmonized CPTAC3 b3f7109c-56ed-4035-a497-663feb3d2f84 aeb7801cdfd1d07dd6293525309991bd {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WGS.T.hg38 C3N-01388 PDA WGS tumor CPT0088320009 2d43960a-d232-4287-889c-9ffebd333652_gdc_realn.bam 151817518800 BAM harmonized CPTAC3 7504037d-63fc-49b3-a22e-ff38bef57e2e 9374369a8227e74b57209a4134078584 {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WXS.N C3N-01388 PDA WXS blood_normal CPT0088350002 CPT0088350002.WholeExome.RP-1303.bam 34840652430 BAM aligned CPTAC3 0dde34dd-ce95-415e-8690-56845134ad52 daf449da7b969ac5c6d1e13938c75be6 {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01388.WXS.N.hg38 C3N-01388 PDA WXS blood_normal CPT0088350002 00c9c2c4-17af-41f7-8b2c-52691ddfbb17_gdc_realn.bam 47660957477 BAM harmonized CPTAC3 ad3b2a7e-2e49-48aa-b115-a6a7d01ddaf3 819dfb09df0e32020961ccfec53d6bf9 {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal"} -C3N-01388.WXS.T C3N-01388 PDA WXS tumor CPT0088320009_1 CPT0088320009_1.WholeExome.RP-1303.bam 66042994859 BAM aligned CPTAC3 c6312392-19ec-465d-8f0d-7f751ee90ba0 944746d4960d45134ba3f6ec450951d1 {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WXS.T C3N-01388 PDA WXS tumor CPT0088320009 CPT0088320009.WholeExome.RP-1303.bam 40128229831 BAM aligned CPTAC3 bcec3751-e704-4d88-b581-240560965542 b84d2a1194e997e78e191d5c0da5c93f {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WXS.T.hg38 C3N-01388 PDA WXS tumor CPT0088320009_1 ff400a50-05bf-4e12-8e8d-8cc536ad958f_wxs_gdc_realn.bam 91268997010 BAM harmonized CPTAC3 d265f537-27ae-4bae-a423-5982db188060 9d7e0cbed8f6d192e775d454ea31fa38 {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor"} -C3N-01388.WXS.T.hg38 C3N-01388 PDA WXS tumor CPT0088320009 2d43960a-d232-4287-889c-9ffebd333652_gdc_realn.bam 55861173749 BAM harmonized CPTAC3 ff191d54-68db-4d59-84b0-fafcabe0ee1d 858aab83687ff91174f1fbfb926b58fa {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor"} -C3N-01389.MethArray.Green.T C3N-01389 PDA Methylation_Array tumor CPT0088360009 202184900111_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 64535db8-f044-42ae-90a3-c76306a2cea0 55c028df89ffcad7d63063788ee91479 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor"} -C3N-01389.MethArray.Red.T C3N-01389 PDA Methylation_Array tumor CPT0088360009 202184900111_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 67e2dc42-f9a0-4cba-8fc3-f32299e0ce65 e859fd21244c4ac9f0cb380a92d54999 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor"} -C3N-01389.miRNA-Seq.S1_L001_R1.T C3N-01389 PDA miRNA-Seq tumor CPT0088360006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 259020610 BAM S1_L001_R1 unaligned CPTAC3 5755c7e4-1466-467c-8778-c315681177c0 b83aa502697175499021414a5c8e5b58 {"aliquot_tag": "ALQ_187a2824", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01389.miRNA-Seq.T.hg38 C3N-01389 PDA miRNA-Seq tumor CPT0088360006 8a343728-fed0-4ff1-9cf4-def00289ac78_mirnaseq_gdc_realn.bam 277678019 BAM harmonized CPTAC3 4ae0d4b2-08b0-4b35-87cf-1526406925ad 71fb59318b6901d3d2cafd9646fecd60 {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor"} -C3N-01389.RNA-Seq.chimeric.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.chimeric.gdc_realn.bam 31452540 BAM chimeric harmonized CPTAC3 ec20d281-ff02-4b38-88de-8bf60691c1c9 4c39333e7a3dd543796e969df75941d1 {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor"} -C3N-01389.RNA-Seq.genomic.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.genomic.gdc_realn.bam 7755144722 BAM genomic harmonized CPTAC3 d5a8897e-994f-4e25-9f29-37299de40bca 887683bbedd948c1b7d71c93a6814ef4 {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor"} -C3N-01389.RNA-Seq.S1_L007_R1.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3771421183 FASTQ S1_L007_R1 unaligned CPTAC3 58d1f578-81ac-4d30-8b4e-1e2ed7fe3286 a7a8ccd340f0e4afe1031a80faae175b {"aliquot_tag": "ALQ_187a2824", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01389.RNA-Seq.S1_L007_R2.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R2_001.fastq.gz 3956529416 FASTQ S1_L007_R2 unaligned CPTAC3 59305e62-652d-43b6-85d4-b235093e3881 f03608c6ae37b40dac1604ca38dd7ae9 {"aliquot_tag": "ALQ_187a2824", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01389.RNA-Seq.transcriptome.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.transcriptome.gdc_realn.bam 10324850651 BAM transcriptome harmonized CPTAC3 5494cc9c-0e5a-4fed-8b2a-19655f617b60 96b271ba744d3c6f146e82b543ef816f {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WGS.N C3N-01389 PDA WGS blood_normal CPT0088400002 CPT0088400002.WholeGenome.RP-1303.bam 67179793068 BAM aligned CPTAC3 91ca11ab-433f-4538-ae82-44bd655de9a6 ad12cc27f401f71d3e44288efe2eb800 {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01389.WGS.N.hg38 C3N-01389 PDA WGS blood_normal CPT0088400002 b74b28ae-8f2c-4961-a8ab-4de81575097b_gdc_realn.bam 101887954760 BAM harmonized CPTAC3 60c5c8e3-3816-4784-8110-9532d490a02b b993443977cadb43533000c1c1b8610b {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01389.WGS.T C3N-01389 PDA WGS tumor CPT0088360009_1 CPT0088360009_1.WholeGenome.RP-1303.bam 119069502194 BAM aligned CPTAC3 f8ac924a-536f-4cd2-8530-5be672ca7d9a 54580c8909c67b386b166c8fa94e92b1 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WGS.T C3N-01389 PDA WGS tumor CPT0088360009 CPT0088360009.WholeGenome.RP-1303.bam 76816653196 BAM aligned CPTAC3 c486fb53-3905-4e9e-9e5e-4aaf5c1d4e50 978dff56a01c5b6cc1a8ed184d3684f4 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WGS.T.hg38 C3N-01389 PDA WGS tumor CPT0088360009 047d8148-c320-4a9c-aed3-0049648606f7_gdc_realn.bam 116312396237 BAM harmonized CPTAC3 1b3f001e-5319-4a16-9e23-7ab4f0c640e2 b8dde8278f707e5b7efaf5c7e600057e {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WGS.T.hg38 C3N-01389 PDA WGS tumor CPT0088360009_1 8c5c2643-dab3-4ac1-aad1-c77aea04ba1b_wgs_gdc_realn.bam 177557123767 BAM harmonized CPTAC3 98140676-1106-4c9d-9971-aecbcba41796 62567159ab50346e5614447fddd83026 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WXS.N C3N-01389 PDA WXS blood_normal CPT0088400002 CPT0088400002.WholeExome.RP-1303.bam 36673560260 BAM aligned CPTAC3 47d54712-417a-48b2-8b70-503ef58a817b f8f73768b0568397431c148b824cd65d {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01389.WXS.N.hg38 C3N-01389 PDA WXS blood_normal CPT0088400002 b74b28ae-8f2c-4961-a8ab-4de81575097b_gdc_realn.bam 49288290722 BAM harmonized CPTAC3 3b0a17bb-f66d-4956-a232-70674f20a906 f037a90fe31b3e3f4a63ed820c3ae107 {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal"} -C3N-01389.WXS.T C3N-01389 PDA WXS tumor CPT0088360009_1 CPT0088360009_1.WholeExome.RP-1303.bam 70625037304 BAM aligned CPTAC3 a05d7c8a-ce44-49d8-b9fb-20cca331b292 a1e0ae07d2d9da082e2292043a2414d3 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WXS.T C3N-01389 PDA WXS tumor CPT0088360009 CPT0088360009.WholeExome.RP-1303.bam 37635147519 BAM aligned CPTAC3 89d6341a-409a-488a-af87-35eca2f8f617 c8eba8e3b457ec46bb63b80d0ec3675f {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WXS.T.hg38 C3N-01389 PDA WXS tumor CPT0088360009 047d8148-c320-4a9c-aed3-0049648606f7_gdc_realn.bam 52289053240 BAM harmonized CPTAC3 897cc956-5353-4ed8-97ff-f316bb3cfd74 a034149bdef969cb8a35d92fdb871288 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor"} -C3N-01389.WXS.T.hg38 C3N-01389 PDA WXS tumor CPT0088360009_1 8c5c2643-dab3-4ac1-aad1-c77aea04ba1b_wxs_gdc_realn.bam 97549148772 BAM harmonized CPTAC3 b3493433-399d-48cd-aa70-da3061506ef2 2e43223ac0518398479344dc992c2df9 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor"} -C3N-01405.MethArray.Green.A C3N-01405 LUAD Methylation_Array tissue_normal CPT0105370010 203028200014_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0cb3abf8-22d4-47a9-b2bb-bf223aac5473 b1bcc920e8e3402be1bca10d3a54f360 {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.MethArray.Green.T C3N-01405 LUAD Methylation_Array tumor CPT0105330009 202234380062_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 028711e2-d7bb-406b-81a3-fcdc0af77eb4 ed09f2ea9e82f6c307b6626aadb9cb1c {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor"} -C3N-01405.MethArray.Red.A C3N-01405 LUAD Methylation_Array tissue_normal CPT0105370010 203028200014_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 fc73ff74-0bde-42f9-a829-c18e692e3a17 f75d15d2e9a332bd6ccca94e4561cc2c {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.MethArray.Red.T C3N-01405 LUAD Methylation_Array tumor CPT0105330009 202234380062_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 99a06ee9-cead-4456-a5ec-c3c7219d639d 7113140e1239a2d9ea8448eefb18cbdc {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor"} -C3N-01405.miRNA-Seq.A.hg38 C3N-01405 LUAD miRNA-Seq tissue_normal CPT0105370007 1bfa8546-3916-4009-8906-ab962b16f918_mirnaseq_gdc_realn.bam 328385417 BAM harmonized CPTAC3 c4d5b97e-b854-4582-af39-1af25006f1fe fc58e6e0034519e733e65a19c50b0f18 {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.miRNA-Seq.S15_L007_R1.A C3N-01405 LUAD miRNA-Seq tissue_normal CPT0105370007 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L007_R1_001.unaln.bam 302408346 BAM S15_L007_R1 unaligned CPTAC3 12cca32f-de94-4f5b-b32c-c0ff609cbc6f 32e42cb14d46bae156e260080444b57d {"aliquot_tag": "ALQ_f7545f34", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.miRNA-Seq.S25_L002_R1.T C3N-01405 LUAD miRNA-Seq tumor CPT0105330006 181113_UNC31-K00269_0164_AH23NNBBXY_ATCACG_S25_L002_R1_001.unaln.bam 252780522 BAM S25_L002_R1 unaligned CPTAC3 4a1a405f-e158-4b77-8051-1c11cdf0f2fe a52672bba30b896ad4db713a27c23ac0 {"aliquot_tag": "ALQ_75d3c962", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01405.miRNA-Seq.T.hg38 C3N-01405 LUAD miRNA-Seq tumor CPT0105330006 08d3a85a-b0b0-4618-bcc2-e42d4c876e9d_mirnaseq_gdc_realn.bam 280737432 BAM harmonized CPTAC3 5afd4992-a6a9-4b93-bd85-7a80023af84c 8080d6bad6e93cbad8fdc71f8cde93af {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor"} -C3N-01405.RNA-Seq.chimeric.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.chimeric.gdc_realn.bam 68978623 BAM chimeric harmonized CPTAC3 1faa11f7-d857-419f-9768-19aafc81b7c9 d384cef7458ef8678e6b4973fda0af7f {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.RNA-Seq.chimeric.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.chimeric.gdc_realn.bam 37602840 BAM chimeric harmonized CPTAC3 622d70db-fac4-402c-a365-98e1fdaed3c4 48de52e659260abd1d436cc6c8538dd9 {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor"} -C3N-01405.RNA-Seq.genomic.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.genomic.gdc_realn.bam 9473974221 BAM genomic harmonized CPTAC3 67096e77-5e4a-40b0-b35a-4017bda37ed6 010c7a7211c0584b1d86537cc5f0472d {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.RNA-Seq.genomic.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.genomic.gdc_realn.bam 8238322869 BAM genomic harmonized CPTAC3 d74a9201-78ef-4c56-8d32-c212ca77b6e8 e14569a0eef155555e80f704ed100ec9 {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor"} -C3N-01405.RNA-Seq.S12_L003_R1.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R1_001.fastq.gz 3739953418 FASTQ S12_L003_R1 unaligned CPTAC3 cb8ddc17-af0a-41e7-938b-643b41ff9cda f1ab8b06e4a4b2a0cf0ba47db82a865a {"aliquot_tag": "ALQ_f7545f34", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.RNA-Seq.S12_L003_R2.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R2_001.fastq.gz 4202411850 FASTQ S12_L003_R2 unaligned CPTAC3 bb48e028-dc28-4d8b-ba9a-42e847f14a7c 61873c93a57247f6803b14fc8be85051 {"aliquot_tag": "ALQ_f7545f34", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.RNA-Seq.S13_L004_R1.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3826095376 FASTQ S13_L004_R1 unaligned CPTAC3 e7c2e10c-7db1-4d29-a772-5dc6a9198511 f384c94d6db3d691fe71837eca7ee829 {"aliquot_tag": "ALQ_75d3c962", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01405.RNA-Seq.S13_L004_R2.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4180720838 FASTQ S13_L004_R2 unaligned CPTAC3 b23ecd28-c2ba-4842-9c54-36c56b344bff 95821c43c0bc81493509e62705f269fe {"aliquot_tag": "ALQ_75d3c962", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01405.RNA-Seq.transcriptome.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.transcriptome.gdc_realn.bam 12096059717 BAM transcriptome harmonized CPTAC3 6deee440-1e83-42a9-a064-822762fcc3c4 0aebdc258b9c6c6e463efa22c5495466 {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.RNA-Seq.transcriptome.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.transcriptome.gdc_realn.bam 10550099858 BAM transcriptome harmonized CPTAC3 df0a0412-c8e1-4da7-bad5-243967f1b8bf 775f3211122e7f266f12e9e82b9c6fc1 {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor"} -C3N-01405.WGS.A C3N-01405 LUAD WGS tissue_normal CPT0105370010 CPT0105370010.WholeGenome.RP-1303.bam 54588810854 BAM aligned CPTAC3 648ce143-c2c1-43b9-b2f3-86b8dd772b0f 05612ff6f8e599b45bc6260325c4468f {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.WGS.A.hg38 C3N-01405 LUAD WGS tissue_normal CPT0105370010 f7af3bf6-4828-47f9-ae3c-abf49383d460_wgs_gdc_realn.bam 80844032768 BAM harmonized CPTAC3 3849b0bd-6999-4459-8a41-94fb656d2da3 cdfc2bb21718b89c3d8a1edf6e5a20b3 {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.WGS.N C3N-01405 LUAD WGS blood_normal CPT0107800002 CPT0107800002.WholeGenome.RP-1303.bam 65742456544 BAM aligned CPTAC3 5bf03013-eb86-41fb-823c-3aab5d1b48db 54c28b3d06d0007d72cd5c1f20be49c1 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal"} -C3N-01405.WGS.N.hg38 C3N-01405 LUAD WGS blood_normal CPT0107800002 c0ecdf32-03f0-4477-b8b8-2076179897c2_wgs_gdc_realn.bam 97764422994 BAM harmonized CPTAC3 981ba4e3-b8da-46fb-a76a-60f54d54b658 60310b3beae5a9851b0b8c8a73057c94 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal"} -C3N-01405.WGS.T C3N-01405 LUAD WGS tumor CPT0105330009 CPT0105330009.WholeGenome.RP-1303.bam 69110954819 BAM aligned CPTAC3 cd23a75c-0ab0-4a8e-a019-01dc3ab77cae 9ca55a943dfa1c2840bece92d0fdd90b {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor"} -C3N-01405.WGS.T.hg38 C3N-01405 LUAD WGS tumor CPT0105330009 6b88df6d-f5d6-4cb2-a387-21454d087768_wgs_gdc_realn.bam 100078094666 BAM harmonized CPTAC3 32c3b904-9dee-4576-9565-e647955c50a2 d635eb89be1ae4703c9e9cb24a9b07f5 {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor"} -C3N-01405.WXS.A C3N-01405 LUAD WXS tissue_normal CPT0105370010 CPT0105370010.WholeExome.RP-1303.bam 33383619889 BAM aligned CPTAC3 96a9ccee-0d03-434d-9791-450b561b4d74 68e65eea9330405743d908ed29c8e5e9 {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.WXS.A.hg38 C3N-01405 LUAD WXS tissue_normal CPT0105370010 f7af3bf6-4828-47f9-ae3c-abf49383d460_wxs_gdc_realn.bam 44657722060 BAM harmonized CPTAC3 c40181dd-7f5e-41d9-ac92-6f74748c28ee 1f0356c89287f395cb2f8746639f7baf {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01405.WXS.N C3N-01405 LUAD WXS blood_normal CPT0107800002 CPT0107800002.WholeExome.RP-1303.bam 25677655899 BAM aligned CPTAC3 92461754-e1d9-499f-a5aa-a99298c0f11d 8c41d086562c884a7ebae9f31fd47295 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal"} -C3N-01405.WXS.N.hg38 C3N-01405 LUAD WXS blood_normal CPT0107800002 c0ecdf32-03f0-4477-b8b8-2076179897c2_wxs_gdc_realn.bam 34672421627 BAM harmonized CPTAC3 fedf7298-36a6-4f2b-ab29-a1d7c7b08065 480606c3f3e7cd70867f9de9aa6fa0e0 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal"} -C3N-01405.WXS.T C3N-01405 LUAD WXS tumor CPT0105330009 CPT0105330009.WholeExome.RP-1303.bam 30982119407 BAM aligned CPTAC3 c82eb29c-36b5-4550-aff6-344fc0685ea1 c540703d1b2fac527cd49083529709f7 {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor"} -C3N-01405.WXS.T.hg38 C3N-01405 LUAD WXS tumor CPT0105330009 6b88df6d-f5d6-4cb2-a387-21454d087768_wxs_gdc_realn.bam 41866456645 BAM harmonized CPTAC3 7950b8fe-e745-4cca-a82c-7ad0d53da17e eda3575fde6a3602a3b2cbd524a8494f {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor"} -C3N-01408.MethArray.Green.A C3N-01408 LUAD Methylation_Array tissue_normal CPT0117890009 203027390089_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0beda905-3b35-422f-8687-9663bbb28f09 00edd42664c7e48156f9f2d54e36dacc {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.MethArray.Green.T C3N-01408 LUAD Methylation_Array tumor CPT0117850009 202234370095_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 acd5c4e3-92b8-4d03-a187-b1fbc9b857a2 dd13e8fc4d33e7a7cd98c36b8f854700 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor"} -C3N-01408.MethArray.Red.A C3N-01408 LUAD Methylation_Array tissue_normal CPT0117890009 203027390089_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 4636aa51-06a4-4eb8-bc1b-7ef4b3829be6 aca1d700caa4f7d6068a47e13e6e58b9 {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.MethArray.Red.T C3N-01408 LUAD Methylation_Array tumor CPT0117850009 202234370095_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 cb4f8d17-f93f-44b5-9638-e38abb46fb1e 053d8ee4c0f3cd17a2df306cc88e6b74 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor"} -C3N-01408.miRNA-Seq.A.hg38 C3N-01408 LUAD miRNA-Seq tissue_normal CPT0117890006 d98d7059-fd4f-4999-99f8-fc62d5baf46b_mirnaseq_gdc_realn.bam 318975318 BAM harmonized CPTAC3 18e1e849-f233-4aee-8052-d6768bbbffdb 4eae224308712eccec2fec72665fff86 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.miRNA-Seq.S25_L005_R1.A C3N-01408 LUAD miRNA-Seq tissue_normal CPT0117890006 181108_UNC31-K00269_0162_AH255GBBXY_ATCACG_S25_L005_R1_001.unaln.bam 292114466 BAM S25_L005_R1 unaligned CPTAC3 2a60e701-7a26-41e9-a9e5-7fff7080236c 067391da1bc7818c4eb1c3b5a5999dec {"aliquot_tag": "ALQ_e9130b7", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.miRNA-Seq.S3_L004_R1.T C3N-01408 LUAD miRNA-Seq tumor CPT0117850006 181119_UNC31-K00269_0165_AH27WCBBXY_ATTCCT_S3_L004_R1_001.unaln.bam 248473029 BAM S3_L004_R1 unaligned CPTAC3 209b0557-74e3-40ef-a2f1-236050615adf c1784be14283ea860345cebdce1e91c9 {"aliquot_tag": "ALQ_cb61ddb6", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01408.miRNA-Seq.T.hg38 C3N-01408 LUAD miRNA-Seq tumor CPT0117850006 07a09938-08bc-4725-ac69-24a196263eb1_mirnaseq_gdc_realn.bam 270405992 BAM harmonized CPTAC3 061abdc7-be9d-4cfc-9c3b-b1f5941b3cbb df882b0a48d2eb042c64a83500841750 {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor"} -C3N-01408.RNA-Seq.chimeric.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.chimeric.gdc_realn.bam 177375574 BAM chimeric harmonized CPTAC3 6dd754d5-e600-4f33-8a7f-7e54bccc5c75 c99fa0b9c6b96a05d172b9288edd5890 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.RNA-Seq.chimeric.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.chimeric.gdc_realn.bam 31854731 BAM chimeric harmonized CPTAC3 6a2c4746-4449-4e4c-b1e7-28b31ca5458b 6d521c5eda5c8ef585ceef09c75ecb4f {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor"} -C3N-01408.RNA-Seq.genomic.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.genomic.gdc_realn.bam 9600920528 BAM genomic harmonized CPTAC3 33867133-6648-41da-a564-904453d900e9 48c9de60f7390fa4e5fccf9d4b51b7a8 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.RNA-Seq.genomic.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.genomic.gdc_realn.bam 6084510564 BAM genomic harmonized CPTAC3 be5ea5ae-569e-4838-b51d-e1baabc18abc e4adc9590906b68f43e16ac6f0f6780c {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor"} -C3N-01408.RNA-Seq.S3_L002_R1.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R1_001.fastq.gz 2728475741 FASTQ S3_L002_R1 unaligned CPTAC3 f0b0aa2f-6e3c-45b0-a788-c2a4328e4f37 6cf74ac1e9de0206ddb7be9c8ac0fc95 {"aliquot_tag": "ALQ_cb61ddb6", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01408.RNA-Seq.S3_L002_R2.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R2_001.fastq.gz 3044850834 FASTQ S3_L002_R2 unaligned CPTAC3 d276bb1c-9658-44dc-b7d2-2574c633cd26 47afc2e418718f297d0d16bd5c2dd46c {"aliquot_tag": "ALQ_cb61ddb6", "sample": "S3", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01408.RNA-Seq.S8_L008_R1.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R1_001.fastq.gz 4645716880 FASTQ S8_L008_R1 unaligned CPTAC3 8107b741-856d-4059-8828-25dd1e390023 39e9edcb2a7f0de15579d650f700bb7d {"aliquot_tag": "ALQ_e9130b7", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.RNA-Seq.S8_L008_R2.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R2_001.fastq.gz 4496241140 FASTQ S8_L008_R2 unaligned CPTAC3 f8af9707-18ab-4e41-8b15-71ab514b1e74 5276b217e6f4ac77d948c68b3599d1c6 {"aliquot_tag": "ALQ_e9130b7", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.RNA-Seq.transcriptome.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.transcriptome.gdc_realn.bam 10296366564 BAM transcriptome harmonized CPTAC3 1a682487-549f-4e0d-a75a-e8b581154961 7d6d425ae1029d726d9077f7f0283249 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.RNA-Seq.transcriptome.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.transcriptome.gdc_realn.bam 9269776158 BAM transcriptome harmonized CPTAC3 6a92e0bb-72dc-4689-b724-50397c0d400b 468b74b788049e9a9007195fba9b683a {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor"} -C3N-01408.WGS.A C3N-01408 LUAD WGS tissue_normal CPT0117890009 CPT0117890009.WholeGenome.RP-1303.bam 55958599081 BAM aligned CPTAC3 9f88d34c-e046-4c1c-87d6-1fdff62d2a8a c1f1ecfe81bfc6bfd476ffa227febed4 {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.WGS.A.hg38 C3N-01408 LUAD WGS tissue_normal CPT0117890009 bc6438c3-4305-42a7-99df-28c9ee5fc5d3_wgs_gdc_realn.bam 82840668389 BAM harmonized CPTAC3 48fb83a3-8035-4068-b926-b45f5d82dcdb 91863467130e035ad38884993d7fa544 {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.WGS.N C3N-01408 LUAD WGS blood_normal CPT0119090002 CPT0119090002.WholeGenome.RP-1303.bam 60247309715 BAM aligned CPTAC3 6b5503d6-619a-4cec-8522-0ddb48f447c8 72c3f41681ad513762468abe9ca764b6 {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01408.WGS.N.hg38 C3N-01408 LUAD WGS blood_normal CPT0119090002 95944c9f-bdad-40ac-ac54-ed1dac6d4d4d_wgs_gdc_realn.bam 88631936059 BAM harmonized CPTAC3 01786f06-6c42-4c11-9269-21ab5cea8017 54c0b790d630674714b45dce28a7c9cc {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01408.WGS.T C3N-01408 LUAD WGS tumor CPT0117850009 CPT0117850009.WholeGenome.RP-1303.bam 67557571238 BAM aligned CPTAC3 184ce6ae-1477-43cf-a20e-c1e9507c1a3d 472093359657352739e9362785232919 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor"} -C3N-01408.WGS.T.hg38 C3N-01408 LUAD WGS tumor CPT0117850009 d6e6a562-263a-44dd-a900-f659ff061e87_wgs_gdc_realn.bam 100292329328 BAM harmonized CPTAC3 d4bcffa4-151f-4ec2-b9bf-1b71d1cc193b 78b06909373b2b4c86361447c468adef {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor"} -C3N-01408.WXS.A C3N-01408 LUAD WXS tissue_normal CPT0117890009 CPT0117890009.WholeExome.RP-1303.bam 39609330663 BAM aligned CPTAC3 53af63d1-af98-4969-8269-13c6f68eb476 b4a3d6ff3b4ef6eb1a3311e7a0ea89da {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.WXS.A.hg38 C3N-01408 LUAD WXS tissue_normal CPT0117890009 bc6438c3-4305-42a7-99df-28c9ee5fc5d3_wxs_gdc_realn.bam 53514597793 BAM harmonized CPTAC3 d0019732-0bec-47ee-b4c8-a3c34c85f6a3 a75415beb6e2e0f626d27e1a936cb93b {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01408.WXS.N C3N-01408 LUAD WXS blood_normal CPT0119090002 CPT0119090002.WholeExome.RP-1303.bam 30015943037 BAM aligned CPTAC3 0d9c5b04-19cc-423e-ad91-ec21881fa0d8 dc019b4a7432490b0f7383892be3a4d0 {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01408.WXS.N.hg38 C3N-01408 LUAD WXS blood_normal CPT0119090002 95944c9f-bdad-40ac-ac54-ed1dac6d4d4d_wxs_gdc_realn.bam 40384606961 BAM harmonized CPTAC3 24189352-5e35-45f3-9653-aaa2e2ea935b 0e0a3667fb98bb5662bb1dafedab8111 {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01408.WXS.T C3N-01408 LUAD WXS tumor CPT0117850009 CPT0117850009.WholeExome.RP-1303.bam 37103430951 BAM aligned CPTAC3 77b33e3d-f339-4f8e-9807-0d830d33940a 22e88a3c710ac51d9baea0dba8746984 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor"} -C3N-01408.WXS.T.hg38 C3N-01408 LUAD WXS tumor CPT0117850009 d6e6a562-263a-44dd-a900-f659ff061e87_wxs_gdc_realn.bam 49798179246 BAM harmonized CPTAC3 591432f0-ebb1-4974-ad6d-627f31aacc13 f4721a804b752265fa7f2040098a15f3 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor"} -C3N-01409.MethArray.Green.A C3N-01409 LUAD Methylation_Array tissue_normal CPT0117940009 203028200048_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 11f6053c-ea51-4be4-a261-c98b8d0e3e4c 3d94174a39e074a7a25b5e33261e0202 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.MethArray.Green.T C3N-01409 LUAD Methylation_Array tumor CPT0117930009 202234360029_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3a9c3bcd-40f2-49f2-9f4c-f8c809c9a448 f147f8cd7a0e91cb857c65a23df6e5f9 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor"} -C3N-01409.MethArray.Red.A C3N-01409 LUAD Methylation_Array tissue_normal CPT0117940009 203028200048_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 8ad141b9-1e53-4dfc-afb4-26925b5e5df2 1c166694d0c66dfcf974596c209913b5 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.MethArray.Red.T C3N-01409 LUAD Methylation_Array tumor CPT0117930009 202234360029_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 570b8a30-04d2-4704-b006-550c4187cc9d 166d2996a6db432bde6aeac971c26a93 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor"} -C3N-01409.miRNA-Seq.A.hg38 C3N-01409 LUAD miRNA-Seq tissue_normal CPT0117940006 5f464963-879b-4f5f-b78a-91dfbbef77a7_mirnaseq_gdc_realn.bam 296928438 BAM harmonized CPTAC3 659ae50e-efe1-4200-96e2-9fc187a7c258 ccdcaf0bc9a25c15091c65cb4fade2b9 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.miRNA-Seq.S26_L005_R1.A C3N-01409 LUAD miRNA-Seq tissue_normal CPT0117940006 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L005_R1_001.unaln.bam 272188336 BAM S26_L005_R1 unaligned CPTAC3 aa51fd9b-a3f6-4b85-9308-b350697e63d2 05e95cc378944cc79ff4110a329c844d {"aliquot_tag": "ALQ_3d5d27a3", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.miRNA-Seq.S4_L004_R1.T C3N-01409 LUAD miRNA-Seq tumor CPT0117930006 181119_UNC31-K00269_0165_AH27WCBBXY_CAAAAG_S4_L004_R1_001.unaln.bam 277433353 BAM S4_L004_R1 unaligned CPTAC3 62df8258-d2d2-45f0-90ea-73ffb48ca136 9bd981e3cee26f29650868d7a2bda402 {"aliquot_tag": "ALQ_8f7dfbb3", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01409.miRNA-Seq.T.hg38 C3N-01409 LUAD miRNA-Seq tumor CPT0117930006 04519836-2639-4805-8251-f10cc4eeb462_mirnaseq_gdc_realn.bam 297860553 BAM harmonized CPTAC3 678cab8c-5db5-4788-bc4c-12672c2652e0 d6fa8a3cdfccbea8215bb9d2d83bc9c8 {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor"} -C3N-01409.RNA-Seq.chimeric.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.chimeric.gdc_realn.bam 134090538 BAM chimeric harmonized CPTAC3 260a326d-aabe-4822-b751-f8645a8061b5 bd10d53a4d1b5dfd7e1ec30023ad3341 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.RNA-Seq.chimeric.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.chimeric.gdc_realn.bam 178174780 BAM chimeric harmonized CPTAC3 560cdeb2-eb54-4524-bc4e-b2838bf70294 e10760be4568d3c455c30471c72020ce {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor"} -C3N-01409.RNA-Seq.genomic.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.genomic.gdc_realn.bam 9186614699 BAM genomic harmonized CPTAC3 45fded74-7db9-4ced-a7f1-9aea40008882 d5cb712bb880c8a7d14e7fcd81db73f3 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.RNA-Seq.genomic.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.genomic.gdc_realn.bam 10631611298 BAM genomic harmonized CPTAC3 230f852c-561b-4d18-866c-0659741c5d90 2ba6aefc5b134f26a7ea04d14bbe35dc {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor"} -C3N-01409.RNA-Seq.S10_L008_R1.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R1_001.fastq.gz 4279477648 FASTQ S10_L008_R1 unaligned CPTAC3 7d9f260e-66c4-4814-b0ee-9a56a6cc04ef 6246df63fbf8e997ea0dfd941db08a64 {"aliquot_tag": "ALQ_3d5d27a3", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.RNA-Seq.S10_L008_R2.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R2_001.fastq.gz 4663858183 FASTQ S10_L008_R2 unaligned CPTAC3 94f92a10-1308-4460-89ec-2981c175823d 3890ef3d12b00e59f8242b0c95ecca81 {"aliquot_tag": "ALQ_3d5d27a3", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.RNA-Seq.S5_L002_R1.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R1_001.fastq.gz 4788455456 FASTQ S5_L002_R1 unaligned CPTAC3 05c1b6aa-d224-4fc3-acfb-961bcaa7de92 7004fb87e98d00e14e2d073dd09a9a70 {"aliquot_tag": "ALQ_8f7dfbb3", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01409.RNA-Seq.S5_L002_R2.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R2_001.fastq.gz 5417194501 FASTQ S5_L002_R2 unaligned CPTAC3 fcec88ed-9ac7-4209-8a47-c2ee075b0f8e 31a7d77298fda3c0776e145f44912bf9 {"aliquot_tag": "ALQ_8f7dfbb3", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01409.RNA-Seq.transcriptome.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.transcriptome.gdc_realn.bam 11010740004 BAM transcriptome harmonized CPTAC3 902a90e6-ce5a-449f-a9ac-d71bff7756ba 5d4ff25f10101d61cd190b3bb4976c30 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.RNA-Seq.transcriptome.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.transcriptome.gdc_realn.bam 11984444742 BAM transcriptome harmonized CPTAC3 0b007f76-7a99-457e-b36f-6c6d13d704d3 bb3292df659d8ea77d8c6f9d08f44605 {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor"} -C3N-01409.WGS.A C3N-01409 LUAD WGS tissue_normal CPT0117940009 CPT0117940009.WholeGenome.RP-1303.bam 57403276235 BAM aligned CPTAC3 20caca76-69f9-448a-bc42-27007b5d3182 37cf66182ac9a317502cf3f9d7be2e0d {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.WGS.A.hg38 C3N-01409 LUAD WGS tissue_normal CPT0117940009 9cb78bb5-67c4-440e-af60-c9670e654b32_wgs_gdc_realn.bam 83292092206 BAM harmonized CPTAC3 73be6fe1-11f1-47d7-86d9-b257fe81083e 3080c48764035d1d88512a1cb623bd68 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.WGS.N C3N-01409 LUAD WGS blood_normal CPT0119150002 CPT0119150002.WholeGenome.RP-1303.bam 81097794648 BAM aligned CPTAC3 23af0ece-6f9e-4231-bf7d-a12654283136 fa64adca84c0fa6e28eb1d645b2414df {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01409.WGS.N.hg38 C3N-01409 LUAD WGS blood_normal CPT0119150002 08438895-c812-4f21-a19e-5325fd71ea4e_wgs_gdc_realn.bam 119446734162 BAM harmonized CPTAC3 1d779fae-bb64-43c0-a270-e6e73da99bde 640d7c00ede31d38f4dff6d71e1c011c {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01409.WGS.T C3N-01409 LUAD WGS tumor CPT0117930009 CPT0117930009.WholeGenome.RP-1303.bam 63348760107 BAM aligned CPTAC3 b1193f8b-22fe-41e3-9984-681afe8bc182 52cf7155e073c9425b679fa822734f64 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor"} -C3N-01409.WGS.T.hg38 C3N-01409 LUAD WGS tumor CPT0117930009 41b2a428-85aa-49c5-830d-580bad9d1f54_wgs_gdc_realn.bam 91686331288 BAM harmonized CPTAC3 f04661c6-b2e8-4278-9d79-d16a2df1dda0 7e9e4e629373d3083b578a40ffe2cc9f {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor"} -C3N-01409.WXS.A C3N-01409 LUAD WXS tissue_normal CPT0117940009 CPT0117940009.WholeExome.RP-1303.bam 36876792938 BAM aligned CPTAC3 d0db24ac-e91d-4c56-95da-fea4f9c0f95c 0c09f2a1712a21f4a94cd5509fed687d {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.WXS.A.hg38 C3N-01409 LUAD WXS tissue_normal CPT0117940009 9cb78bb5-67c4-440e-af60-c9670e654b32_wxs_gdc_realn.bam 49151011338 BAM harmonized CPTAC3 17ba827f-faa8-4e32-8ca6-0ae3200d7633 f48bc4476dfdf77058734500accc7641 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01409.WXS.N C3N-01409 LUAD WXS blood_normal CPT0119150002 CPT0119150002.WholeExome.RP-1303.bam 38600973038 BAM aligned CPTAC3 5304dae8-fa42-40c2-8934-220693393ab7 e5deda1c2cbcc38e69cc81ab49952b4b {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01409.WXS.N.hg38 C3N-01409 LUAD WXS blood_normal CPT0119150002 08438895-c812-4f21-a19e-5325fd71ea4e_wxs_gdc_realn.bam 51519647407 BAM harmonized CPTAC3 db9aeba9-4731-47d2-ac26-7b4ed0c2a974 2606c956782ef5f874d458527e4cb51e {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01409.WXS.T C3N-01409 LUAD WXS tumor CPT0117930009 CPT0117930009.WholeExome.RP-1303.bam 41499804527 BAM aligned CPTAC3 94c63e2d-349d-4e84-a2a1-544fd10a37bc 7a880cf5d317a19eaa1b72a69189a63d {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor"} -C3N-01409.WXS.T.hg38 C3N-01409 LUAD WXS tumor CPT0117930009 41b2a428-85aa-49c5-830d-580bad9d1f54_wxs_gdc_realn.bam 56413187940 BAM harmonized CPTAC3 e166dbd6-3c34-4b9c-8879-5c47000c8706 972ed2663186f672e87258614f0d1945 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor"} -C3N-01410.MethArray.Green.A C3N-01410 LUAD Methylation_Array tissue_normal CPT0118010009 203027390113_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 396a6e96-b9f0-4791-84a1-5ab8c39702be 7ef2fd02d1ca0bc775dbcc243cf47639 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.MethArray.Green.T C3N-01410 LUAD Methylation_Array tumor CPT0117970009 202234380099_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a9b727a4-2790-4b81-a051-48fe2df97113 4145818be7473e2d943046d027d2d014 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor"} -C3N-01410.MethArray.Red.A C3N-01410 LUAD Methylation_Array tissue_normal CPT0118010009 203027390113_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 65ae0eb6-8269-4573-bcbf-0e5b8b5b9e61 0dfbf71e7739b72244da43fe64fa04c7 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.MethArray.Red.T C3N-01410 LUAD Methylation_Array tumor CPT0117970009 202234380099_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 82091e9e-7839-4f18-bcab-93fd0acf0616 54d53a5089910edb568a44afaaaa2e94 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor"} -C3N-01410.miRNA-Seq.A.hg38 C3N-01410 LUAD miRNA-Seq tissue_normal CPT0118010006 a704f9ee-d36d-4078-9fa2-bb7104bf2116_mirnaseq_gdc_realn.bam 264943059 BAM harmonized CPTAC3 8ad3cbac-cdf1-490b-a2d2-4da5330b9d7c f76627545c8d710dca14e877ffe7a03b {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.miRNA-Seq.S27_L005_R1.A C3N-01410 LUAD miRNA-Seq tissue_normal CPT0118010006 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L005_R1_001.unaln.bam 241264413 BAM S27_L005_R1 unaligned CPTAC3 649dcfc6-cf23-463f-a1b1-8e723ea7929d c0b0306c652e6cf9073b66a8a91cf2bb {"aliquot_tag": "ALQ_24fa89f2", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.miRNA-Seq.S5_L004_R1.T C3N-01410 LUAD miRNA-Seq tumor CPT0117970006 181119_UNC31-K00269_0165_AH27WCBBXY_CAACTA_S5_L004_R1_001.unaln.bam 232605298 BAM S5_L004_R1 unaligned CPTAC3 d06f73ce-495e-4d0e-8c53-ed65fc82abf0 c915ce8cfc3953594977909d6fabb1a9 {"aliquot_tag": "ALQ_7afd5d73", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01410.miRNA-Seq.T.hg38 C3N-01410 LUAD miRNA-Seq tumor CPT0117970006 41ca1f33-edb1-4bfc-8b82-93e061046f03_mirnaseq_gdc_realn.bam 246710985 BAM harmonized CPTAC3 b1ed6e4b-3535-4a89-94a2-69605b3b0140 053f72e7c0784c5eae3ba1c5e7727c13 {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor"} -C3N-01410.RNA-Seq.chimeric.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.chimeric.gdc_realn.bam 118138447 BAM chimeric harmonized CPTAC3 3b0c4b1f-3f7a-49c1-aeee-fd95bfd5ac2a 1d732555273a9af9321b24436b0c62ef {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.RNA-Seq.chimeric.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.chimeric.gdc_realn.bam 151201218 BAM chimeric harmonized CPTAC3 7f77e27f-3b0a-4ac8-bbc0-9a61ce752a36 dcb31f86b2ced62b7b74aa01d0e26f6b {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor"} -C3N-01410.RNA-Seq.genomic.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.genomic.gdc_realn.bam 9015401653 BAM genomic harmonized CPTAC3 7ec6a072-a58b-4fac-b7aa-b107460020d6 402ff0aa38be754e91b3ddb12fe16f81 {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.RNA-Seq.genomic.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.genomic.gdc_realn.bam 9724920067 BAM genomic harmonized CPTAC3 e57d640f-ca77-4526-b50a-5b5fe3b16869 a9670c3556ee6f06752df7cdb454fc33 {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor"} -C3N-01410.RNA-Seq.S5_L008_R1.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R1_001.fastq.gz 4020894248 FASTQ S5_L008_R1 unaligned CPTAC3 2a7ea7e5-8bdb-42a1-92de-1e834613408a a7f68efe807c7d31e43922774ff9ad1c {"aliquot_tag": "ALQ_24fa89f2", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.RNA-Seq.S5_L008_R2.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R2_001.fastq.gz 4411991827 FASTQ S5_L008_R2 unaligned CPTAC3 f52226c8-d695-404d-b2aa-d62d5ababc57 7a174abb9a4c87a4f4fcd1b69d9374ef {"aliquot_tag": "ALQ_24fa89f2", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.RNA-Seq.S7_L002_R1.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R1_001.fastq.gz 4197600930 FASTQ S7_L002_R1 unaligned CPTAC3 eb212621-bbd4-41cc-8389-aba6dd151656 6c385b68d3c0ffb2de237eef999eac02 {"aliquot_tag": "ALQ_7afd5d73", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01410.RNA-Seq.S7_L002_R2.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R2_001.fastq.gz 4770984392 FASTQ S7_L002_R2 unaligned CPTAC3 6dc7354b-a711-4a5d-9e31-39c70884d08c 4905bd85002bc8da627f82c4d72c3f66 {"aliquot_tag": "ALQ_7afd5d73", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01410.RNA-Seq.transcriptome.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.transcriptome.gdc_realn.bam 10074605915 BAM transcriptome harmonized CPTAC3 67ed592b-1105-4786-8dcf-1f53a24e84b2 d71c22974d9ead5d23956f4d017a98d0 {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.RNA-Seq.transcriptome.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.transcriptome.gdc_realn.bam 11215562495 BAM transcriptome harmonized CPTAC3 ac6684b0-1336-4a13-bec7-5297f11f9079 0b905eeb8bb6cda395f42acca11ec413 {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor"} -C3N-01410.WGS.A C3N-01410 LUAD WGS tissue_normal CPT0118010009 CPT0118010009.WholeGenome.RP-1303.bam 52509271683 BAM aligned CPTAC3 40944398-53c6-484b-8f32-5ec434988e5f a27d0acc8ac8fba507cfdc63f3bc7850 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.WGS.A.hg38 C3N-01410 LUAD WGS tissue_normal CPT0118010009 72ac40bc-46e6-4e4e-9419-7e99bd8963c2_wgs_gdc_realn.bam 77199933337 BAM harmonized CPTAC3 705eb38d-04c2-4dbe-8dae-2dca8e2c32ae 1f0e29fb33b5c70e47a84a6fa1668049 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.WGS.N C3N-01410 LUAD WGS blood_normal CPT0119210002 CPT0119210002.WholeGenome.RP-1303.bam 73742943542 BAM aligned CPTAC3 6557d8a8-3ecd-4b91-ac96-458867eebe14 c521e24db95b566dc9bbef129e95001a {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal"} -C3N-01410.WGS.N.hg38 C3N-01410 LUAD WGS blood_normal CPT0119210002 45c7d850-8bb3-4612-96c3-b0bb98f852bb_wgs_gdc_realn.bam 109312711989 BAM harmonized CPTAC3 add0603d-9625-460c-8a66-b9c81e393089 73514e5693d67e7ab438e71ec32e92a1 {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal"} -C3N-01410.WGS.T C3N-01410 LUAD WGS tumor CPT0117970009 CPT0117970009.WholeGenome.RP-1303.bam 61134733817 BAM aligned CPTAC3 509466f8-c315-44b1-852d-d7ab5d667199 80019924e7f4847a046f34ad9c7eb008 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor"} -C3N-01410.WGS.T.hg38 C3N-01410 LUAD WGS tumor CPT0117970009 7c2971d4-40a3-41cd-92fd-3a771f40870f_wgs_gdc_realn.bam 89828957137 BAM harmonized CPTAC3 6b1ff167-0d26-42b8-8608-b2e7de1a36d3 75f78e93e2e481ec5790a29075696f13 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor"} -C3N-01410.WXS.A C3N-01410 LUAD WXS tissue_normal CPT0118010009 CPT0118010009.WholeExome.RP-1303.bam 39042964944 BAM aligned CPTAC3 6b91314d-556a-4850-a3c9-63e89c89575c 60e66afc58ae04208b938b0c0eb0770c {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.WXS.A.hg38 C3N-01410 LUAD WXS tissue_normal CPT0118010009 72ac40bc-46e6-4e4e-9419-7e99bd8963c2_wxs_gdc_realn.bam 52438576231 BAM harmonized CPTAC3 13fd4285-a59e-4a75-a323-7ea77214da69 0a4250cb9e858ca4747f8a78d2563ee6 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01410.WXS.N C3N-01410 LUAD WXS blood_normal CPT0119210002 CPT0119210002.WholeExome.RP-1303.bam 28691812717 BAM aligned CPTAC3 174dea21-2507-4ebb-b447-eafd5f811750 ebb9149d8bdb6546f3a84b963bb7376e {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal"} -C3N-01410.WXS.N.hg38 C3N-01410 LUAD WXS blood_normal CPT0119210002 45c7d850-8bb3-4612-96c3-b0bb98f852bb_wxs_gdc_realn.bam 37779366513 BAM harmonized CPTAC3 943737e6-0e86-4102-8442-3b667534828e 2fad55ca7fade7ee76d62302915ca97d {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal"} -C3N-01410.WXS.T C3N-01410 LUAD WXS tumor CPT0117970009 CPT0117970009.WholeExome.RP-1303.bam 33694572525 BAM aligned CPTAC3 4763ba13-fffd-419a-bdac-858ffc4528b7 54ff680bd50c05e2cdd4d936f98c896d {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor"} -C3N-01410.WXS.T.hg38 C3N-01410 LUAD WXS tumor CPT0117970009 7c2971d4-40a3-41cd-92fd-3a771f40870f_wxs_gdc_realn.bam 45464901730 BAM harmonized CPTAC3 e0f1fe45-5cb3-4c9f-9269-0a4fefed8203 cb9040aad83845a4956af9d613798f45 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor"} -C3N-01411.MethArray.Green.A C3N-01411 LSCC Methylation_Array tissue_normal CPT0105430006 203219650218_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a0f24cb2-b7da-4916-8d30-1cccc18fba6f 22e054466febb49f4a224479e2088b14 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.MethArray.Green.T C3N-01411 LSCC Methylation_Array tumor CPT0105420009 202234360029_R06C01_Grn.idat 13676242 IDAT Green NA CPTAC3 4ee295cf-79e7-47fe-8014-cf1f14a2a699 627b06438c2b7e38b8049dd2e24cda18 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor"} -C3N-01411.MethArray.Red.A C3N-01411 LSCC Methylation_Array tissue_normal CPT0105430006 203219650218_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 30c01c28-1bc9-423e-b777-69b5812062a1 54e99350af92f64482d7d378e46d3ef5 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.MethArray.Red.T C3N-01411 LSCC Methylation_Array tumor CPT0105420009 202234360029_R06C01_Red.idat 13676242 IDAT Red NA CPTAC3 95e6d654-5918-46de-9842-6bf3db149673 8705b39235ffd45d87b70ec4ff7733e5 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor"} -C3N-01411.miRNA-Seq.A.hg38 C3N-01411 LSCC miRNA-Seq tissue_normal CPT0105430009 4ec3633b-39cb-4a27-afda-6c6cb3a2716b_mirnaseq_gdc_realn.bam 178932408 BAM harmonized CPTAC3 a5181894-ee51-418b-8777-31460bf6e528 75a3fd74fd2d62dbdf903822f766cab4 {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.miRNA-Seq.S26_L002_R1.T C3N-01411 LSCC miRNA-Seq tumor CPT0105420006 181113_UNC31-K00269_0164_AH23NNBBXY_CGATGT_S26_L002_R1_001.unaln.bam 253184859 BAM S26_L002_R1 unaligned CPTAC3 67726376-849a-4df7-8309-48be9923de07 45d8270c59e8534457f00b5502e3cae8 {"aliquot_tag": "ALQ_55b6d06a", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01411.miRNA-Seq.S4_L005_R1.A C3N-01411 LSCC miRNA-Seq tissue_normal CPT0105430009 181113_UNC31-K00269_0164_AH23NNBBXY_CAAAAG_S4_L005_R1_001.unaln.bam 157312346 BAM S4_L005_R1 unaligned CPTAC3 602bf824-a0c9-41be-83b3-c1b51a288375 f4ad093c18702e62716ddee5e870a8d7 {"aliquot_tag": "ALQ_f869e44b", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.miRNA-Seq.T.hg38 C3N-01411 LSCC miRNA-Seq tumor CPT0105420006 dc70c1da-2f30-4d35-827c-745ffb327cce_mirnaseq_gdc_realn.bam 283268551 BAM harmonized CPTAC3 9dff38ac-51dc-4142-be11-870ce19de67c c94fe3bbc78b082965743bed539e89ca {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor"} -C3N-01411.RNA-Seq.chimeric.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.chimeric.gdc_realn.bam 45410438 BAM chimeric harmonized CPTAC3 7d00f9bc-3ccf-4411-9ba3-8b92d2b89ec3 d520d3a8776b31e1b12f6785539e6b4d {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.RNA-Seq.chimeric.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.chimeric.gdc_realn.bam 31702140 BAM chimeric harmonized CPTAC3 a76b8838-e1a4-4036-b228-9501988679fa 5ca8789dfc2d8c1b4dedec3995bda69f {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor"} -C3N-01411.RNA-Seq.genomic.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.genomic.gdc_realn.bam 9104616704 BAM genomic harmonized CPTAC3 fb910558-0551-4b4a-ae9e-7028ad203c6d fc580132fc818814c41599ef7b60191b {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.RNA-Seq.genomic.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.genomic.gdc_realn.bam 7784753459 BAM genomic harmonized CPTAC3 73207794-3715-4a23-81cd-de7409271d3a 748c61a941fe119fe919bb9b53cd3d1a {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor"} -C3N-01411.RNA-Seq.S16_L004_R1.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3778238256 FASTQ S16_L004_R1 unaligned CPTAC3 e87055d9-f513-4b8a-b7d2-41429c116627 84821ea16a60c941422284fe27dd65d6 {"aliquot_tag": "ALQ_55b6d06a", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01411.RNA-Seq.S16_L004_R2.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3959497381 FASTQ S16_L004_R2 unaligned CPTAC3 4a4c8e39-00b2-4a7f-987c-73eb1561e681 bdb2fbd340069685527f48a8c5b1198d {"aliquot_tag": "ALQ_55b6d06a", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01411.RNA-Seq.S4_L001_R1.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3968728740 FASTQ S4_L001_R1 unaligned CPTAC3 8e181985-87cf-4b03-b1a6-7d2085de9f2d 4d36e29124f811ce70684e4df4ac260a {"aliquot_tag": "ALQ_f869e44b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.RNA-Seq.S4_L001_R2.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4219877915 FASTQ S4_L001_R2 unaligned CPTAC3 feb66235-feef-4091-903c-8af81d459d17 62f8023c97c08ac13848eeb6b1b98fb6 {"aliquot_tag": "ALQ_f869e44b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.RNA-Seq.transcriptome.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.transcriptome.gdc_realn.bam 10490174536 BAM transcriptome harmonized CPTAC3 ce74b90e-9eea-4110-b5c8-1176b37c7ff8 7d40c27e2d2c69da9d57c933af23ead0 {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.RNA-Seq.transcriptome.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.transcriptome.gdc_realn.bam 10525231278 BAM transcriptome harmonized CPTAC3 36471100-dc47-48c5-830f-361bd7a6152d 8159e0c1d489cae9f0bb77c3cee709ff {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor"} -C3N-01411.WGS.A C3N-01411 LSCC WGS tissue_normal CPT0105430006 CPT0105430006.WholeGenome.RP-1303.bam 65053536402 BAM aligned CPTAC3 cdbf7e51-bd95-4c0b-8587-0528401eadec 7b2888b1907082e3e984267ed4ac53ff {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.WGS.A.hg38 C3N-01411 LSCC WGS tissue_normal CPT0105430006 809c752d-b093-4490-8cf6-06ce2f158553_wgs_gdc_realn.bam 93533049669 BAM harmonized CPTAC3 64daf356-b1a2-43f6-8b14-9f302664454b eeb9c18850384d8e9e9efd77c02c9957 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.WGS.N C3N-01411 LSCC WGS blood_normal CPT0107860002 CPT0107860002.WholeGenome.RP-1303.bam 63240637290 BAM aligned CPTAC3 fab239eb-6c43-4577-af63-19a9bad51890 4abdf0bb14ca92706a76c6c3eae7bcf5 {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01411.WGS.N.hg38 C3N-01411 LSCC WGS blood_normal CPT0107860002 b1dc0f80-5d31-403e-a85a-2afaac9dcddf_wgs_gdc_realn.bam 93048772168 BAM harmonized CPTAC3 b5576da5-a68b-4802-aa1d-48b3864d3b62 482b73289e4b527f205abc8bf9b42ee4 {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01411.WGS.T C3N-01411 LSCC WGS tumor CPT0105420009 CPT0105420009.WholeGenome.RP-1303.bam 69413482539 BAM aligned CPTAC3 5b7f1775-41aa-48f5-9fe3-55e3fe406999 729ce6d9e0584675c7673a063f4e992c {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor"} -C3N-01411.WGS.T.hg38 C3N-01411 LSCC WGS tumor CPT0105420009 61b7c6e3-19c0-4e15-98ea-980978ff2e95_wgs_gdc_realn.bam 101426776439 BAM harmonized CPTAC3 5e17997d-8c52-4771-9b26-4803f9c1c53f 7b208126dc37f1e27c64819189154c06 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor"} -C3N-01411.WXS.A C3N-01411 LSCC WXS tissue_normal CPT0105430006 CPT0105430006.WholeExome.RP-1303.bam 31620230226 BAM aligned CPTAC3 5b47b077-cd5f-47ed-b07d-900b98c0be40 7d66f1ad9a6697d8fd89f1c2b6f2e537 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.WXS.A.hg38 C3N-01411 LSCC WXS tissue_normal CPT0105430006 809c752d-b093-4490-8cf6-06ce2f158553_wxs_gdc_realn.bam 42795343630 BAM harmonized CPTAC3 094abc04-cf67-4d82-9df0-814c88fb542f abe7dbe4bf81a139c634948d341bd9fc {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01411.WXS.N C3N-01411 LSCC WXS blood_normal CPT0107860002 CPT0107860002.WholeExome.RP-1303.bam 38306683934 BAM aligned CPTAC3 9e3d77fe-e6d4-418c-9f86-349beccf69ac 64ff95d0cc552c75c88a789aa578c4e1 {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01411.WXS.N.hg38 C3N-01411 LSCC WXS blood_normal CPT0107860002 b1dc0f80-5d31-403e-a85a-2afaac9dcddf_wxs_gdc_realn.bam 51569469902 BAM harmonized CPTAC3 3fe87e46-aa3d-47ce-9062-a38a810a865a 5003142359fa11141bbd26a558bf354d {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01411.WXS.T C3N-01411 LSCC WXS tumor CPT0105420009 CPT0105420009.WholeExome.RP-1303.bam 42166090208 BAM aligned CPTAC3 c8b981fb-462c-47ca-a72a-e23abceb8dc0 3f507a147c0388190503296430044087 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor"} -C3N-01411.WXS.T.hg38 C3N-01411 LSCC WXS tumor CPT0105420009 61b7c6e3-19c0-4e15-98ea-980978ff2e95_wxs_gdc_realn.bam 57671420131 BAM harmonized CPTAC3 b5017ec2-6360-477d-9c94-dd7c64c0661c 64d73737ba5e07119c4616fe065c27e5 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor"} -C3N-01413.MethArray.Green.A C3N-01413 LUAD Methylation_Array tissue_normal CPT0105550009 203027390040_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 78f010b5-4291-44ae-b628-da5b85affb19 4b9dbc0dc37cc7a645f171681be2fe41 {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.MethArray.Green.T C3N-01413 LUAD Methylation_Array tumor CPT0105510009 202234380050_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 64b6cd2f-dc42-43c7-a5cd-099576948cb0 086d1a95fa8f31d13b687e409bb382e6 {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor"} -C3N-01413.MethArray.Red.A C3N-01413 LUAD Methylation_Array tissue_normal CPT0105550009 203027390040_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 3811a83b-9c92-41ff-9e3d-16964c96ac2f 4de81fbda370417ac9c6dba9e086c33b {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.MethArray.Red.T C3N-01413 LUAD Methylation_Array tumor CPT0105510009 202234380050_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 b3b7e90e-a96d-4956-82da-4d146af2b67d 4f5d16422659bb46f5881e2f35bc4ecd {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor"} -C3N-01413.miRNA-Seq.A.hg38 C3N-01413 LUAD miRNA-Seq tissue_normal CPT0105550006 51a712f0-b717-4036-b53c-a8c69a12628e_mirnaseq_gdc_realn.bam 268693777 BAM harmonized CPTAC3 d494ac86-a65a-45a3-9250-0d38cd2d0e3e 515dac7398799963b77b82f0475792c1 {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.miRNA-Seq.S28_L005_R1.A C3N-01413 LUAD miRNA-Seq tissue_normal CPT0105550006 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L005_R1_001.unaln.bam 245751836 BAM S28_L005_R1 unaligned CPTAC3 748acda3-4dd5-4315-9108-ca5c4621091e 2d266f4ea2efbd49d3512ae0272123ac {"aliquot_tag": "ALQ_2ccadfdf", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.miRNA-Seq.S34_L003_R1.T C3N-01413 LUAD miRNA-Seq tumor CPT0105510006 181119_UNC31-K00269_0165_AH27WCBBXY_TAGCTT_S34_L003_R1_001.unaln.bam 240089561 BAM S34_L003_R1 unaligned CPTAC3 f9cde240-9abd-45ab-bec1-a2d621ed53bc ae45f71f476f1960538bc42263bec88d {"aliquot_tag": "ALQ_d94a791f", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01413.miRNA-Seq.T.hg38 C3N-01413 LUAD miRNA-Seq tumor CPT0105510006 2e3872ad-a350-4664-a577-251400c325f3_mirnaseq_gdc_realn.bam 258510588 BAM harmonized CPTAC3 630c140d-76f9-4638-85e4-cc093885c982 269caca7ff23ae9eb6b9d5c93900c214 {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor"} -C3N-01413.RNA-Seq.chimeric.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.chimeric.gdc_realn.bam 118932415 BAM chimeric harmonized CPTAC3 56156127-e6e1-4619-a551-2c0f48f75af1 916772f80e7c54b83ac864ae0b1d944b {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.RNA-Seq.chimeric.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.chimeric.gdc_realn.bam 98151343 BAM chimeric harmonized CPTAC3 79ce149e-5a8f-42f3-81bd-020ec55dacdd 576d9c6335b558215fdad0cf12c2c2a0 {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor"} -C3N-01413.RNA-Seq.genomic.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.genomic.gdc_realn.bam 9053380162 BAM genomic harmonized CPTAC3 80bb0338-8a6d-4625-89ba-18930aa459bf 7744f119a039500bd84ece7ef3e30fd4 {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.RNA-Seq.genomic.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.genomic.gdc_realn.bam 9623723387 BAM genomic harmonized CPTAC3 8023c1ce-a000-4a75-a325-947b7fbe1fa0 20c6bfa4d063614701ba05e20d1f0108 {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor"} -C3N-01413.RNA-Seq.S6_L008_R1.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R1_001.fastq.gz 4250845951 FASTQ S6_L008_R1 unaligned CPTAC3 37d30592-4988-40c0-8b64-5315ded6231b 2d422e0fb1fe70be6252712d3bf66bd0 {"aliquot_tag": "ALQ_2ccadfdf", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.RNA-Seq.S6_L008_R2.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R2_001.fastq.gz 4571261299 FASTQ S6_L008_R2 unaligned CPTAC3 9c583061-c1f4-4125-a325-44a7cb7cce44 d2be896dfd9b9c757a3ef7b4e81f823b {"aliquot_tag": "ALQ_2ccadfdf", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.RNA-Seq.S7_L008_R1.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R1_001.fastq.gz 3588963934 FASTQ S7_L008_R1 unaligned CPTAC3 3723de36-3389-49b0-b042-561986d50f17 5b5de8427f5109a5ae2cdeb551f46910 {"aliquot_tag": "ALQ_d94a791f", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01413.RNA-Seq.S7_L008_R2.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R2_001.fastq.gz 4041076318 FASTQ S7_L008_R2 unaligned CPTAC3 b3cc7d24-4260-42e5-b682-278743c2ac79 40269d555048612a654bc2bd8ac8c3da {"aliquot_tag": "ALQ_d94a791f", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01413.RNA-Seq.transcriptome.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.transcriptome.gdc_realn.bam 11204467017 BAM transcriptome harmonized CPTAC3 e67de3f9-5938-48a3-9b97-a22f14af10ac ca8c198f6ac15f81bb11648e2138d0b9 {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.RNA-Seq.transcriptome.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.transcriptome.gdc_realn.bam 9369682388 BAM transcriptome harmonized CPTAC3 6c0e996e-6b1e-426f-a8de-0c1d61d2bd52 c3b402dc276381ce0d289f5a77b5ae2f {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor"} -C3N-01413.WGS.A C3N-01413 LUAD WGS tissue_normal CPT0105550009 CPT0105550009.WholeGenome.RP-1303.bam 64968788348 BAM aligned CPTAC3 cf4a2089-91f5-4ccc-a6c7-b225fc26b9cf 9d10cb79f4e1e5d342539b86a5559fce {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.WGS.A.hg38 C3N-01413 LUAD WGS tissue_normal CPT0105550009 a3b2cfbe-fced-4899-9451-5d48b5ea312b_wgs_gdc_realn.bam 95809259340 BAM harmonized CPTAC3 79bf8871-4631-453e-bdc2-9c6d9fc212cc 2afd4f6faea86db8c73892f45a941226 {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.WGS.N C3N-01413 LUAD WGS blood_normal CPT0107980002 CPT0107980002.WholeGenome.RP-1303.bam 70359257862 BAM aligned CPTAC3 74e59d87-06ee-45f2-8a57-fd2ea4576714 3365d7bdcf5aa907064a27b7f74a39f3 {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal"} -C3N-01413.WGS.N.hg38 C3N-01413 LUAD WGS blood_normal CPT0107980002 87c5e2eb-49ba-47c4-8f8d-a99d26927ff9_wgs_gdc_realn.bam 103029558776 BAM harmonized CPTAC3 ee6fdbf4-69c1-4f29-88c4-b79d1cfdfa35 56ed2d16480f525f01b19b1323a3fd94 {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal"} -C3N-01413.WGS.T C3N-01413 LUAD WGS tumor CPT0105510009 CPT0105510009.WholeGenome.RP-1303.bam 66140989650 BAM aligned CPTAC3 75e82fcb-c862-4de3-a9ff-6005d2120c19 cd68c99490eee266245bc39a270f6c7b {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor"} -C3N-01413.WGS.T.hg38 C3N-01413 LUAD WGS tumor CPT0105510009 81f9ede6-25c7-4ade-85de-a5cbeff94b5a_wgs_gdc_realn.bam 98248389867 BAM harmonized CPTAC3 0c82f940-08fc-48be-a64e-3b6b34455d43 3891af22de6a9027b25ade5ea1ae822b {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor"} -C3N-01413.WXS.A C3N-01413 LUAD WXS tissue_normal CPT0105550009 CPT0105550009.WholeExome.RP-1303.bam 31996710210 BAM aligned CPTAC3 dbb264d7-c62e-4d08-b15e-bf7c22b9eb62 9384fd26d619da8c21a4b291300b7c4e {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.WXS.A.hg38 C3N-01413 LUAD WXS tissue_normal CPT0105550009 a3b2cfbe-fced-4899-9451-5d48b5ea312b_wxs_gdc_realn.bam 43724406306 BAM harmonized CPTAC3 018a1f87-4bce-41ca-a20e-ef864efb9f18 0cbd61b4f32eef19ed615547a6cac4bf {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01413.WXS.N C3N-01413 LUAD WXS blood_normal CPT0107980002 CPT0107980002.WholeExome.RP-1303.bam 31680253595 BAM aligned CPTAC3 09bb2f76-2091-45a4-bf58-86508f7f49b0 1bd931f21b0d4c7a6953484c4fd02212 {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal"} -C3N-01413.WXS.N.hg38 C3N-01413 LUAD WXS blood_normal CPT0107980002 87c5e2eb-49ba-47c4-8f8d-a99d26927ff9_wxs_gdc_realn.bam 41957041045 BAM harmonized CPTAC3 de9f3c3f-bec0-4446-b5f4-1710bb13ce59 898032a71e63745d4cb032242421728f {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal"} -C3N-01413.WXS.T C3N-01413 LUAD WXS tumor CPT0105510009 CPT0105510009.WholeExome.RP-1303.bam 36003981154 BAM aligned CPTAC3 a23324c2-c8ca-4534-bb70-7c5937eef21a cd6abd7cc51316f839368ea58944dce9 {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor"} -C3N-01413.WXS.T.hg38 C3N-01413 LUAD WXS tumor CPT0105510009 81f9ede6-25c7-4ade-85de-a5cbeff94b5a_wxs_gdc_realn.bam 48621075899 BAM harmonized CPTAC3 d83b9b3e-feee-4bfb-8c6b-0db082c6bace e652db8fec72d16665ad455e61ee1617 {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor"} -C3N-01414.MethArray.Green.A C3N-01414 LUAD Methylation_Array tissue_normal CPT0105610009 203027390078_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2262aa4c-eb9a-44b6-9a94-cf729813724c d47da076d22e3b64a5cd045a05b1f240 {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.MethArray.Green.T C3N-01414 LUAD Methylation_Array tumor CPT0105600009 202234380069_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2538e226-5e96-46bd-8afc-d9d7a29b16cd 44c33777cf63c86192c922a1bd0bf502 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor"} -C3N-01414.MethArray.Red.A C3N-01414 LUAD Methylation_Array tissue_normal CPT0105610009 203027390078_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 60f6d1b5-b2ca-4df0-81ed-b1ca6be352e3 b2fbd2578db39219d64c433d8e9b13e4 {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.MethArray.Red.T C3N-01414 LUAD Methylation_Array tumor CPT0105600009 202234380069_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 4ced638f-0f14-4dbf-8249-a4a6340ed046 d104a78857c4011d574c7288e2ff0a63 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor"} -C3N-01414.miRNA-Seq.A.hg38 C3N-01414 LUAD miRNA-Seq tissue_normal CPT0105610006 fac7f355-f2e2-45ce-8c77-a175eefd32a0_mirnaseq_gdc_realn.bam 289847402 BAM harmonized CPTAC3 41133f5d-2f32-4768-86ee-c6c4a12b1e25 be94b224d6cb77d4cce286143d4fbd1d {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.miRNA-Seq.S30_L005_R1.A C3N-01414 LUAD miRNA-Seq tissue_normal CPT0105610006 181108_UNC31-K00269_0162_AH255GBBXY_GCCAAT_S30_L005_R1_001.unaln.bam 265753235 BAM S30_L005_R1 unaligned CPTAC3 9138038a-18be-4bd6-acac-b8e3b703245f bfb568d4042633b40f8ed0db03f9e822 {"aliquot_tag": "ALQ_5fde0bb1", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.miRNA-Seq.S35_L003_R1.T C3N-01414 LUAD miRNA-Seq tumor CPT0105600006 181119_UNC31-K00269_0165_AH27WCBBXY_GGCTAC_S35_L003_R1_001.unaln.bam 257025478 BAM S35_L003_R1 unaligned CPTAC3 dac8b12d-c044-4837-a9d1-dc209afc6da9 b22c924fc9ee1a389c5f24546ed8d749 {"aliquot_tag": "ALQ_62be2201", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01414.miRNA-Seq.T.hg38 C3N-01414 LUAD miRNA-Seq tumor CPT0105600006 578d59ed-fbc2-446e-ba10-d0071804d327_mirnaseq_gdc_realn.bam 276725533 BAM harmonized CPTAC3 31fde208-22d1-4383-89a7-811e491a5556 2ab79e4086e9c3322e6a506e900eaaf0 {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor"} -C3N-01414.RNA-Seq.chimeric.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.chimeric.gdc_realn.bam 73800504 BAM chimeric harmonized CPTAC3 79a04648-ac89-4ee1-af92-8520ef6c5328 a8db864f4ee532dde9abc5916fdef918 {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.RNA-Seq.chimeric.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.chimeric.gdc_realn.bam 46477630 BAM chimeric harmonized CPTAC3 a7218c4d-4c52-4359-bdb4-397770fba27d 8a00f8b7e62a805620006f665a854459 {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor"} -C3N-01414.RNA-Seq.genomic.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.genomic.gdc_realn.bam 7917711202 BAM genomic harmonized CPTAC3 d9864b3b-11d6-4501-b6a3-eeca18f0a6ac 8d5ea81e14af8dc2f8faaddd5352e339 {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.RNA-Seq.genomic.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.genomic.gdc_realn.bam 8424685295 BAM genomic harmonized CPTAC3 4c89c15b-9334-423b-8a18-0d02759beb22 65bc164eeede1a140a381d81c41f36b3 {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor"} -C3N-01414.RNA-Seq.S35_L006_R1.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R1_001.fastq.gz 3884159206 FASTQ S35_L006_R1 unaligned CPTAC3 bbfffa23-6ba2-4146-b17e-0dac46d39049 8c8342cd9cb5616373a8536b531bda4e {"aliquot_tag": "ALQ_5fde0bb1", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.RNA-Seq.S35_L006_R2.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R2_001.fastq.gz 4208871781 FASTQ S35_L006_R2 unaligned CPTAC3 d2564ee1-2759-4863-86c4-37f5c8eb10fc c9abf0a8e6cddeebaefecb37f7f3575e {"aliquot_tag": "ALQ_5fde0bb1", "sample": "S35", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.RNA-Seq.S6_L008_R1.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R1_001.fastq.gz 3448561046 FASTQ S6_L008_R1 unaligned CPTAC3 083ddf86-ad21-4447-a896-d39d75fa36b8 d470457981931e872131321588017842 {"aliquot_tag": "ALQ_62be2201", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01414.RNA-Seq.S6_L008_R2.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R2_001.fastq.gz 3892030268 FASTQ S6_L008_R2 unaligned CPTAC3 0749fcf3-e147-4c46-b217-145c9f899e98 fb224def9325c06bacd34a34d95e005c {"aliquot_tag": "ALQ_62be2201", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01414.RNA-Seq.transcriptome.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.transcriptome.gdc_realn.bam 8979468457 BAM transcriptome harmonized CPTAC3 8230236e-9c49-4c87-a1fb-a5b991556bbb f317f3b54b2cbb0c45c01e24d078a3d8 {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.RNA-Seq.transcriptome.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.transcriptome.gdc_realn.bam 9263411893 BAM transcriptome harmonized CPTAC3 a6db3a10-7b69-4493-9c8d-658af3e76205 c8c40639b532d2316667352fcc8274ae {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor"} -C3N-01414.WGS.A C3N-01414 LUAD WGS tissue_normal CPT0105610009 CPT0105610009.WholeGenome.RP-1303.bam 61300120074 BAM aligned CPTAC3 a9f31c52-49f4-408f-be27-b719d730b7a7 507eba4b57fec9391f4c3bc261ede6eb {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.WGS.A.hg38 C3N-01414 LUAD WGS tissue_normal CPT0105610009 9e9cb2b0-2f66-4c7d-b089-636bbf836201_wgs_gdc_realn.bam 89864628324 BAM harmonized CPTAC3 b2312110-ab15-4f81-808b-2da1fc5652eb 559130a865ebba1307edae8738a14201 {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.WGS.N C3N-01414 LUAD WGS blood_normal CPT0108040002 CPT0108040002.WholeGenome.RP-1303.bam 62361140762 BAM aligned CPTAC3 338842a0-d58a-4bc5-8696-9e6a744a25b7 31f0f2eeb20bc990cf7d9deea5732007 {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal"} -C3N-01414.WGS.N.hg38 C3N-01414 LUAD WGS blood_normal CPT0108040002 183943be-60df-4118-a3f0-201d8a47ea32_wgs_gdc_realn.bam 92015005598 BAM harmonized CPTAC3 e231ae6c-09d8-44e4-8a45-008a878ab47d 999540b99fe79f46db5805a64ba3b27b {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal"} -C3N-01414.WGS.T C3N-01414 LUAD WGS tumor CPT0105600009 CPT0105600009.WholeGenome.RP-1303.bam 68653620510 BAM aligned CPTAC3 c9e60e74-41dd-4845-a67b-921aae101610 2fb5a9d769132294168f005cbc36e011 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor"} -C3N-01414.WGS.T.hg38 C3N-01414 LUAD WGS tumor CPT0105600009 b561fdeb-94f7-49ab-addf-0fcf2d85c0c1_wgs_gdc_realn.bam 99762019985 BAM harmonized CPTAC3 c689f0ec-826b-4f69-bfc8-45c916b81e93 e7a7e3510ca86c085b60344bfb6eecc0 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor"} -C3N-01414.WXS.A C3N-01414 LUAD WXS tissue_normal CPT0105610009 CPT0105610009.WholeExome.RP-1303.bam 41738181647 BAM aligned CPTAC3 26546676-4247-4c00-87f6-4fb68317df78 f7bd90cfd8bd9068b2580ded63d13ccf {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.WXS.A.hg38 C3N-01414 LUAD WXS tissue_normal CPT0105610009 9e9cb2b0-2f66-4c7d-b089-636bbf836201_wxs_gdc_realn.bam 56532798684 BAM harmonized CPTAC3 fd25bc25-686a-4b1a-85c9-a0fbf37c9416 27c381a0705919c321fb5b34cef9f0cd {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01414.WXS.N C3N-01414 LUAD WXS blood_normal CPT0108040002 CPT0108040002.WholeExome.RP-1303.bam 42076822339 BAM aligned CPTAC3 41f22eeb-eeb0-462f-9faf-c4a327776ed0 185967bdf5ea14282f23c89dc49a0f28 {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal"} -C3N-01414.WXS.N.hg38 C3N-01414 LUAD WXS blood_normal CPT0108040002 183943be-60df-4118-a3f0-201d8a47ea32_wxs_gdc_realn.bam 56607425959 BAM harmonized CPTAC3 45b1fbc9-c2e9-45d7-b319-145b351c44c0 bfd6620249b75262e8854a50d26096c3 {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal"} -C3N-01414.WXS.T C3N-01414 LUAD WXS tumor CPT0105600009 CPT0105600009.WholeExome.RP-1303.bam 31500844614 BAM aligned CPTAC3 5564e4f4-da4f-49c2-8420-ce2a584ed318 ee22d4d7dc004768622c3244beeca5e0 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor"} -C3N-01414.WXS.T.hg38 C3N-01414 LUAD WXS tumor CPT0105600009 b561fdeb-94f7-49ab-addf-0fcf2d85c0c1_wxs_gdc_realn.bam 42174857691 BAM harmonized CPTAC3 fc64d455-7ca8-48aa-92dc-c9b79f829195 486113440bd9b2f078deef2f3bce51c9 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor"} -C3N-01415.MethArray.Green.A C3N-01415 LUAD Methylation_Array tissue_normal CPT0105680009 203027390120_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9a4e3770-22db-43c0-9802-a2dfcd5f27d6 98e067e9ec26e9466dd2050896d3e348 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.MethArray.Green.T C3N-01415 LUAD Methylation_Array tumor CPT0105630009 202234380054_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 65174e08-7ac6-4193-abe7-bd260225ac4d 74558cac9bc315f79068e2d03f604c1f {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor"} -C3N-01415.MethArray.Red.A C3N-01415 LUAD Methylation_Array tissue_normal CPT0105680009 203027390120_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 c14cceb0-8fda-4c22-a8f1-eecb5883a2b7 c51f060c3026335b0a911045ac536382 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.MethArray.Red.T C3N-01415 LUAD Methylation_Array tumor CPT0105630009 202234380054_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 4cbc1bf6-a6ef-45d9-a37d-40b1a51db25f 5ae68cfde0bf0d255129c904c93ee401 {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor"} -C3N-01415.miRNA-Seq.A.hg38 C3N-01415 LUAD miRNA-Seq tissue_normal CPT0105680006 6aab0433-48f8-49bf-a225-0e3630f5a696_mirnaseq_gdc_realn.bam 281560925 BAM harmonized CPTAC3 2104188e-528d-46e3-83bc-360c065a077b 5d3d1f0f08142642e60d78e3e3f893dc {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.miRNA-Seq.S34_L002_R1.T C3N-01415 LUAD miRNA-Seq tumor CPT0105630006 181113_UNC31-K00269_0164_AH23NNBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 269355382 BAM S34_L002_R1 unaligned CPTAC3 59dab539-fac1-4f98-b154-e82a6fe6779d 4323556fef4a3536c2e39a6ecafed585 {"aliquot_tag": "ALQ_251e58d1", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01415.miRNA-Seq.S9_L007_R1.A C3N-01415 LUAD miRNA-Seq tissue_normal CPT0105680006 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L007_R1_001.unaln.bam 254760120 BAM S9_L007_R1 unaligned CPTAC3 e7e3f2a2-acf2-4dca-a7ac-f1ad85b80dfd 763ab31545657b9a857f6d1fad9d989a {"aliquot_tag": "ALQ_52ce69c0", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.miRNA-Seq.T.hg38 C3N-01415 LUAD miRNA-Seq tumor CPT0105630006 7015a6b5-7473-4903-84ab-9b7e436246bf_mirnaseq_gdc_realn.bam 288582363 BAM harmonized CPTAC3 0add4d9c-f4c7-4612-92ca-8c0f855916ce 079691ea994c343c36e9711125d8b4a2 {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor"} -C3N-01415.RNA-Seq.chimeric.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.chimeric.gdc_realn.bam 52219291 BAM chimeric harmonized CPTAC3 34210399-fce6-4712-b918-a51f93554ce5 9123c28a8fb9a49102f71aaf492e0cd4 {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.RNA-Seq.chimeric.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.chimeric.gdc_realn.bam 83334617 BAM chimeric harmonized CPTAC3 c0224df9-84a0-4be4-8d9e-5c7b271a3cd8 896904d5b130885ecf37a0e4020097e4 {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor"} -C3N-01415.RNA-Seq.genomic.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.genomic.gdc_realn.bam 8028925332 BAM genomic harmonized CPTAC3 abec9145-b7ba-45e0-b477-b4c278b52cc7 aa29751fd5a83ba1b5d611064eb56212 {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.RNA-Seq.genomic.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.genomic.gdc_realn.bam 8819552066 BAM genomic harmonized CPTAC3 3d75ee16-91d7-4148-8ce1-09fbc67060d0 04de0977f20c49b8dc7582fb3b21916b {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor"} -C3N-01415.RNA-Seq.S14_L004_R1.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R1_001.fastq.gz 3731598497 FASTQ S14_L004_R1 unaligned CPTAC3 77b0d409-80b7-47fb-a43e-df98348f7e34 103243e7199d7c8876492e05ed276668 {"aliquot_tag": "ALQ_52ce69c0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.RNA-Seq.S14_L004_R2.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R2_001.fastq.gz 4164646642 FASTQ S14_L004_R2 unaligned CPTAC3 6cbbe3b0-9dd7-43c7-b7c0-5ea0a106827b 54c5f0d8b6dfb1a37f393e9d8d5f6304 {"aliquot_tag": "ALQ_52ce69c0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.RNA-Seq.S3_L007_R1.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3741499312 FASTQ S3_L007_R1 unaligned CPTAC3 21fbb374-55f4-4bec-b087-e94275e55154 cd40d3105e7f0235933c01060969425c {"aliquot_tag": "ALQ_251e58d1", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01415.RNA-Seq.S3_L007_R2.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 4238170824 FASTQ S3_L007_R2 unaligned CPTAC3 45b86fc1-9bd8-46b6-911d-17a5477edebb 7095d4423abfead0740d4313b97c2080 {"aliquot_tag": "ALQ_251e58d1", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01415.RNA-Seq.transcriptome.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.transcriptome.gdc_realn.bam 9670913612 BAM transcriptome harmonized CPTAC3 e193017e-0acb-444b-b02f-6bb0d7cdb4f5 b3c61f8c47f867376380601add56513f {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.RNA-Seq.transcriptome.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.transcriptome.gdc_realn.bam 11092869592 BAM transcriptome harmonized CPTAC3 8c31f7ac-268d-4655-b3f1-5df4119bed0f 25c679aef4bae2a22583c294793270d5 {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor"} -C3N-01415.WGS.A C3N-01415 LUAD WGS tissue_normal CPT0105680009 CPT0105680009.WholeGenome.RP-1303.bam 58934193412 BAM aligned CPTAC3 558029f2-3f7d-44a4-b1c5-09f1ae414810 5611b500e8e0b45ea35de23de9330934 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.WGS.A.hg38 C3N-01415 LUAD WGS tissue_normal CPT0105680009 f789f3c0-99bd-4533-a965-3f60d0df875a_wgs_gdc_realn.bam 85562592192 BAM harmonized CPTAC3 23bb89f7-1694-4bb9-ba5f-354be28e5a01 617fe4097669eb878b835e03cfa0240d {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.WGS.N C3N-01415 LUAD WGS blood_normal CPT0108100002 CPT0108100002.WholeGenome.RP-1303.bam 61111853478 BAM aligned CPTAC3 50a4a0b2-bb2d-45f1-a09a-33e036663c1a 63f52d06a82f303aa6e6cf1af7539caf {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal"} -C3N-01415.WGS.N.hg38 C3N-01415 LUAD WGS blood_normal CPT0108100002 741b4489-01b4-465d-a82f-8ac84fb1222a_wgs_gdc_realn.bam 90689167104 BAM harmonized CPTAC3 c8793c70-5eef-40ff-a809-e3e119cde00e 9558389ffb3f71507ec5d2feed195fac {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal"} -C3N-01415.WGS.T C3N-01415 LUAD WGS tumor CPT0105630009 CPT0105630009.WholeGenome.RP-1303.bam 62398143306 BAM aligned CPTAC3 93857bcf-836c-4d51-9185-d63593fb5744 2c6b7b66708eb58b1fea68908df2316d {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor"} -C3N-01415.WGS.T.hg38 C3N-01415 LUAD WGS tumor CPT0105630009 a386fafe-f46f-429d-bf4b-9e690dc806fe_wgs_gdc_realn.bam 91813410969 BAM harmonized CPTAC3 98252d4f-8891-4e33-afe9-2dfc594150b5 ffcb24759e1b6706cad6be528f28bbfa {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor"} -C3N-01415.WXS.A C3N-01415 LUAD WXS tissue_normal CPT0105680009 CPT0105680009.WholeExome.RP-1303.bam 35318122294 BAM aligned CPTAC3 6bb38a2f-a419-4584-85f9-e1a628617efa d188b198fe11706848b666603d7059f0 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.WXS.A.hg38 C3N-01415 LUAD WXS tissue_normal CPT0105680009 f789f3c0-99bd-4533-a965-3f60d0df875a_wxs_gdc_realn.bam 47872331926 BAM harmonized CPTAC3 f1a47208-77cd-43b8-80d7-163ef8a433c5 3e9a7842b0ab2790dcaea8db72da3f5d {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01415.WXS.N C3N-01415 LUAD WXS blood_normal CPT0108100002 CPT0108100002.WholeExome.RP-1303.bam 49008182210 BAM aligned CPTAC3 791bf9bb-1f06-47fd-a774-c520c4f87472 7e7a4f4833c5614e84ad9d415babaf0a {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal"} -C3N-01415.WXS.N.hg38 C3N-01415 LUAD WXS blood_normal CPT0108100002 741b4489-01b4-465d-a82f-8ac84fb1222a_wxs_gdc_realn.bam 64763809362 BAM harmonized CPTAC3 44ea40a7-a4b2-4a8e-969d-c1d477bc5647 fc1c1bcfd9b59d6a42abdbf4fa5edb90 {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal"} -C3N-01415.WXS.T C3N-01415 LUAD WXS tumor CPT0105630009 CPT0105630009.WholeExome.RP-1303.bam 44114328511 BAM aligned CPTAC3 72d00f7a-ac0b-4ccc-94c4-d7bd40e279eb e4ce3fec8fcc8c0b28aea60c58311df0 {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor"} -C3N-01415.WXS.T.hg38 C3N-01415 LUAD WXS tumor CPT0105630009 a386fafe-f46f-429d-bf4b-9e690dc806fe_wxs_gdc_realn.bam 59289793995 BAM harmonized CPTAC3 b60bda2a-2b47-47ea-9682-19d13f5dcea0 61d54a1e9c36cc761a903dfc0e73f36e {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor"} -C3N-01416.MethArray.Green.A C3N-01416 LUAD Methylation_Array tissue_normal CPT0105740009 203027390113_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1606f210-92a3-4648-b24d-139aa680f951 8dd061d31ce43312d505ab76fdbf1959 {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.MethArray.Green.T C3N-01416 LUAD Methylation_Array tumor CPT0105710009 202234380094_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1475a0cf-eea3-4e4e-bdd0-8134b63b63f1 1543e092fa4be507db566de8e1705f72 {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor"} -C3N-01416.MethArray.Red.A C3N-01416 LUAD Methylation_Array tissue_normal CPT0105740009 203027390113_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 d6fd6fb7-2f83-498a-b626-090e011cd85f 62f1a2e6ddb0700129b53c5e2eda1040 {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.MethArray.Red.T C3N-01416 LUAD Methylation_Array tumor CPT0105710009 202234380094_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 9f21c07c-4145-412f-b657-6682f2d251c8 452efd8e12a13af36c25370366b1ab1d {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor"} -C3N-01416.miRNA-Seq.A.hg38 C3N-01416 LUAD miRNA-Seq tissue_normal CPT0105740006 d4fd275e-5110-4c1e-aaa0-33ca820aa0b0_mirnaseq_gdc_realn.bam 319378929 BAM harmonized CPTAC3 1e12a080-9d67-45a2-b716-bfc29289e220 7472c346177b511a0966422739dccbd9 {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.miRNA-Seq.S31_L005_R1.A C3N-01416 LUAD miRNA-Seq tissue_normal CPT0105740006 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L005_R1_001.unaln.bam 287881818 BAM S31_L005_R1 unaligned CPTAC3 d0182cc1-58a0-4368-8b33-1650207ad086 8fe11e8440a5afdd6908393353736b11 {"aliquot_tag": "ALQ_5c625764", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.miRNA-Seq.S36_L003_R1.T C3N-01416 LUAD miRNA-Seq tumor CPT0105710006 181119_UNC31-K00269_0165_AH27WCBBXY_CTTGTA_S36_L003_R1_001.unaln.bam 178775226 BAM S36_L003_R1 unaligned CPTAC3 ebdce905-ed8c-45f4-830d-b33cdbcd14ed 335ae18a0ba66f01b8f87abf4b57cb83 {"aliquot_tag": "ALQ_9482d814", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01416.miRNA-Seq.T.hg38 C3N-01416 LUAD miRNA-Seq tumor CPT0105710006 9fb7cd36-6956-4d4f-9d61-94d1a05e6e4e_mirnaseq_gdc_realn.bam 195240335 BAM harmonized CPTAC3 f1ff99cb-635e-4a31-8774-e579063a82cd 8a9a2aed1388fd2c155dd2d5f7e3c23e {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor"} -C3N-01416.RNA-Seq.chimeric.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.chimeric.gdc_realn.bam 99598413 BAM chimeric harmonized CPTAC3 f9d4b1d8-45a5-49df-9476-41d631b53a80 a5bd8254065e6a5375d3dbb2be591bde {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.RNA-Seq.chimeric.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.chimeric.gdc_realn.bam 72043906 BAM chimeric harmonized CPTAC3 b1d59943-6ce2-4282-b7e8-82572e25f90f ea2a05b01e3caf8e6019e94e2aa0f68f {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor"} -C3N-01416.RNA-Seq.genomic.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.genomic.gdc_realn.bam 8991978718 BAM genomic harmonized CPTAC3 4ec04f5b-4ae4-4c2f-beb2-3e15746717cc 32e72a0f3653b94870bd20988c53c53b {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.RNA-Seq.genomic.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.genomic.gdc_realn.bam 10289537860 BAM genomic harmonized CPTAC3 d9523d66-715e-4d96-b65f-7eea0b901047 6ff31101e5afbcefb75e1af4cccfecb0 {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor"} -C3N-01416.RNA-Seq.S2_L007_R1.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4629598212 FASTQ S2_L007_R1 unaligned CPTAC3 5ff9e7d8-7662-4e2c-9e80-83e70e8ef934 b74b1384ce86929544e8dde09c06816b {"aliquot_tag": "ALQ_9482d814", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01416.RNA-Seq.S2_L007_R2.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5200400455 FASTQ S2_L007_R2 unaligned CPTAC3 d0d38a99-79c6-40ca-866e-119dc61e8817 a9f861cccda5553ffaa05b956ea747a6 {"aliquot_tag": "ALQ_9482d814", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01416.RNA-Seq.S3_L007_R1.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R1_001.fastq.gz 4234679336 FASTQ S3_L007_R1 unaligned CPTAC3 b8002bd5-4758-43e0-8be9-18da4c513cd4 7a0766428b270bcf59f1915976b49731 {"aliquot_tag": "ALQ_5c625764", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.RNA-Seq.S3_L007_R2.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R2_001.fastq.gz 4702801558 FASTQ S3_L007_R2 unaligned CPTAC3 a171d956-4934-438d-b19d-1b2d7cbe12f5 604698e4a293e7f0d6625f380329785c {"aliquot_tag": "ALQ_5c625764", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.RNA-Seq.transcriptome.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.transcriptome.gdc_realn.bam 11090024312 BAM transcriptome harmonized CPTAC3 13ae2856-f886-4621-9241-ae8bb8e11cf0 73fdddd36b0a81d39868519f10b1d4bd {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.RNA-Seq.transcriptome.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.transcriptome.gdc_realn.bam 12685198224 BAM transcriptome harmonized CPTAC3 49af5ea8-f90e-4503-a278-08de40887a28 bdb285e29374770283c1b885643bfeff {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor"} -C3N-01416.WGS.A C3N-01416 LUAD WGS tissue_normal CPT0105740009 CPT0105740009.WholeGenome.RP-1303.bam 52694397961 BAM aligned CPTAC3 78d5f1f9-f685-49c2-86b1-6119afc42c85 fc9d868edd0771dbee6d5390f2ede171 {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.WGS.A.hg38 C3N-01416 LUAD WGS tissue_normal CPT0105740009 c1f2d7df-cfd6-4015-affb-a2f7c2b74ad7_wgs_gdc_realn.bam 77724058652 BAM harmonized CPTAC3 3c507951-d620-4406-a75f-a1f6cec71362 528ee3a38ec7b9ee59c0da29db9a44dc {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.WGS.N C3N-01416 LUAD WGS blood_normal CPT0108160002 CPT0108160002.WholeGenome.RP-1303.bam 60955416891 BAM aligned CPTAC3 180daccb-79ee-4335-9717-f6a27ebe4178 4c5d5148d68321591eb5fc3bff3188c2 {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01416.WGS.N.hg38 C3N-01416 LUAD WGS blood_normal CPT0108160002 34a91d65-a389-4d30-ba52-722d20799fa8_wgs_gdc_realn.bam 88232966345 BAM harmonized CPTAC3 274c97d1-0762-4686-8f16-b1c26a45d0ca 0a7ac24adca482e3bac6949363548f81 {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01416.WGS.T C3N-01416 LUAD WGS tumor CPT0105710009 CPT0105710009.WholeGenome.RP-1303.bam 65110940095 BAM aligned CPTAC3 f836ddc0-1b70-4485-8596-21e6b3df1bf8 5ca436c5df5e9d524e689356a36617fc {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor"} -C3N-01416.WGS.T.hg38 C3N-01416 LUAD WGS tumor CPT0105710009 19259be0-acf2-4826-b674-fea6f2fe6889_wgs_gdc_realn.bam 95373112776 BAM harmonized CPTAC3 32dfc156-010a-4ac5-adf0-a2cb8be50030 03331524823d2d7106af88b98214f1b8 {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor"} -C3N-01416.WXS.A C3N-01416 LUAD WXS tissue_normal CPT0105740009 CPT0105740009.WholeExome.RP-1303.bam 26952722473 BAM aligned CPTAC3 6a0d23c7-de21-473a-965f-92c9ec6e76ad afc0f4e26c37bf20de5a21814def908d {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.WXS.A.hg38 C3N-01416 LUAD WXS tissue_normal CPT0105740009 c1f2d7df-cfd6-4015-affb-a2f7c2b74ad7_wxs_gdc_realn.bam 36882227856 BAM harmonized CPTAC3 126a09a5-c538-4417-b622-c932e62c4e62 5cabedb8a9782970e72d83ecd94a9c1f {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01416.WXS.N C3N-01416 LUAD WXS blood_normal CPT0108160002 CPT0108160002.WholeExome.RP-1303.bam 37371135593 BAM aligned CPTAC3 347c6989-0fb6-414d-a83e-fa24b9974b47 da4b17defca622fceb60f2fa41c444cc {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01416.WXS.N.hg38 C3N-01416 LUAD WXS blood_normal CPT0108160002 34a91d65-a389-4d30-ba52-722d20799fa8_wxs_gdc_realn.bam 49112937400 BAM harmonized CPTAC3 ac7071e8-a335-4ba0-bfc3-5ffcd12334bc bdafe8d349569d08113d58b52745983d {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01416.WXS.T C3N-01416 LUAD WXS tumor CPT0105710009 CPT0105710009.WholeExome.RP-1303.bam 23449569133 BAM aligned CPTAC3 da201ede-2d77-45cd-be63-46f7596d0403 e83e8e208bd4f4b053c05ba051bf703d {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor"} -C3N-01416.WXS.T.hg38 C3N-01416 LUAD WXS tumor CPT0105710009 19259be0-acf2-4826-b674-fea6f2fe6889_wxs_gdc_realn.bam 31795779041 BAM harmonized CPTAC3 d90450bc-aa17-4938-b216-ab28e8815c36 9daf15ecd1fa4c530db7a3ed503c03aa {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor"} -C3N-01417.MethArray.Green.T C3N-01417 LUAD Methylation_Array tumor CPT0105780009 203219650211_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 e0987a09-85db-4b5f-97ef-a9ad69466ae2 8ee2c437b67d4ac5075efa8f2fe0b4b0 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor"} -C3N-01417.MethArray.Red.T C3N-01417 LUAD Methylation_Array tumor CPT0105780009 203219650211_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 e6c197c9-1e57-4cd5-8378-a2ff585d6015 b7606bb46197dac8218abef31df6d081 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor"} -C3N-01417.miRNA-Seq.A.hg38 C3N-01417 LUAD miRNA-Seq tissue_normal CPT0105790006 29a466c5-bd9c-44a4-b8f7-fcb89d7be84b_mirnaseq_gdc_realn.bam 333116105 BAM harmonized CPTAC3 dc708479-7a5f-42b3-82b2-9dd7aa2a602d 149addb91e48114c6d9a131b6c4c4cc8 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.miRNA-Seq.S38_L003_R1.A C3N-01417 LUAD miRNA-Seq tissue_normal CPT0105790006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTAGCT_S38_L003_R1_001.unaln.bam 305745801 BAM S38_L003_R1 unaligned CPTAC3 3c22344a-f315-4ee1-82d1-0ac27cdf99d2 6644bc17c444479946d5c61190a299d9 {"aliquot_tag": "ALQ_a4f293d5", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.miRNA-Seq.S7_L002_R1.T C3N-01417 LUAD miRNA-Seq tumor CPT0105780006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGATC_S7_L002_R1_001.unaln.bam 215783445 BAM S7_L002_R1 unaligned CPTAC3 a6b1af7c-a965-43d5-8cbe-0ca8fb113a79 a822bbc74e0331061fe68044e7110fba {"aliquot_tag": "ALQ_9992ba65", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01417.miRNA-Seq.T.hg38 C3N-01417 LUAD miRNA-Seq tumor CPT0105780006 6db76d1e-96cd-4970-93bf-6c9b79929ffa_mirnaseq_gdc_realn.bam 231830173 BAM harmonized CPTAC3 b1dc7d14-9c2e-4ba9-a045-334069a51c9c 53d6fb20971e8e9d443d81d733ad6043 {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor"} -C3N-01417.RNA-Seq.chimeric.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.chimeric.gdc_realn.bam 29556386 BAM chimeric harmonized CPTAC3 501925ce-437b-4a24-8c98-4bb39ab5d146 0c6fe32cea379d2ac7c29ac4c471ea69 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.RNA-Seq.chimeric.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.chimeric.gdc_realn.bam 29593679 BAM chimeric harmonized CPTAC3 1f4ef151-4fc1-4c20-a51e-7631338e1f9c 0f8ac09a4bf24810ee7f9f2b59df90be {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor"} -C3N-01417.RNA-Seq.genomic.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.genomic.gdc_realn.bam 10807902295 BAM genomic harmonized CPTAC3 e0841c07-150b-47e6-9881-8385028a5e61 f2c197101c0df830e660c92ce74c5365 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.RNA-Seq.genomic.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.genomic.gdc_realn.bam 11102385446 BAM genomic harmonized CPTAC3 b443b6fc-3159-4762-8cb8-6a791903561e 309909c539b99417ec17d157d76a6b1d {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor"} -C3N-01417.RNA-Seq.S1_L001_R1.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3768015532 FASTQ S1_L001_R1 unaligned CPTAC3 39f8264a-bf45-44f2-9738-dc1f5c03b7c3 270035ecf97961b5efe94dcba14dcc49 {"aliquot_tag": "ALQ_9992ba65", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01417.RNA-Seq.S1_L001_R2.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R2_001.fastq.gz 4160511963 FASTQ S1_L001_R2 unaligned CPTAC3 a30ace3b-f582-4852-b0ff-3611c721fa18 df85c13dafa65291d3fbdd019e6d3fe4 {"aliquot_tag": "ALQ_9992ba65", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01417.RNA-Seq.S2_L001_R1.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R1_001.fastq.gz 4076450368 FASTQ S2_L001_R1 unaligned CPTAC3 59e1bd20-c638-42b1-8ff6-995edca4f72c 3bc26a462d45008f5ea05a4a84155948 {"aliquot_tag": "ALQ_a4f293d5", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.RNA-Seq.S2_L001_R2.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R2_001.fastq.gz 4410655751 FASTQ S2_L001_R2 unaligned CPTAC3 3d3ee85a-d7f1-4b95-87a1-3baa528db7ee 7f00f1492de3431bdf4d7f742e51a53e {"aliquot_tag": "ALQ_a4f293d5", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.RNA-Seq.transcriptome.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.transcriptome.gdc_realn.bam 11147874547 BAM transcriptome harmonized CPTAC3 aa397a49-3c6a-4e4a-aec5-22a37b387199 f03275c4de57d8a07589855c365deb73 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.RNA-Seq.transcriptome.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.transcriptome.gdc_realn.bam 9601299650 BAM transcriptome harmonized CPTAC3 42494443-f834-425a-941e-d8d1e5e06720 fcf28494da94011e3bdf2615743e85e3 {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor"} -C3N-01417.WGS.A C3N-01417 LUAD WGS tissue_normal CPT0105790009 CPT0105790009.WholeGenome.RP-1303.bam 55599543061 BAM aligned CPTAC3 59a7fc97-7136-4dbd-9037-3d4f4385e097 30711a65413491935a01c178bd642fa6 {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.WGS.A.hg38 C3N-01417 LUAD WGS tissue_normal CPT0105790009 5301d77c-29e2-4b40-bfda-49021e1913cc_wgs_gdc_realn.bam 81886257957 BAM harmonized CPTAC3 6aee97aa-965c-4ba2-bf5f-5eb3b565aba3 5d1057e7ab3201bdaddea3df4c916eb0 {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.WGS.N C3N-01417 LUAD WGS blood_normal CPT0108220004 CPT0108220004.WholeGenome.RP-1303.bam 60305899415 BAM aligned CPTAC3 f078d9e2-2d76-4d04-b510-1620b7466f85 1c38d139922542b25cfc62d87ebcf314 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01417.WGS.N.hg38 C3N-01417 LUAD WGS blood_normal CPT0108220004 f37e81f6-1671-4e3d-a651-7c6f9458de96_wgs_gdc_realn.bam 89342796480 BAM harmonized CPTAC3 ba069865-dc04-4bd7-a965-7fb4aa70af99 2d926a9dd77fc4948e0c72f18b5a6562 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01417.WGS.T C3N-01417 LUAD WGS tumor CPT0105780009 CPT0105780009.WholeGenome.RP-1303.bam 63237634726 BAM aligned CPTAC3 27762829-cbab-4abd-b3f8-473ca4299b27 ec287c35927afe2bd06b983408d5c1ed {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor"} -C3N-01417.WGS.T.hg38 C3N-01417 LUAD WGS tumor CPT0105780009 9aff0957-aa05-46ff-8e72-f1766e9f011a_wgs_gdc_realn.bam 92593779068 BAM harmonized CPTAC3 7f366f4d-dc22-4277-852f-2f41c67f1cd0 06155b392040f67ef40327f5a3cfae86 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor"} -C3N-01417.WXS.A C3N-01417 LUAD WXS tissue_normal CPT0105790009 CPT0105790009.WholeExome.RP-1303.bam 20284070140 BAM aligned CPTAC3 0a85ca48-7679-4d21-b59f-1db90b3f5342 7f57943124b99eff936a1eb7670d810a {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.WXS.A.hg38 C3N-01417 LUAD WXS tissue_normal CPT0105790009 5301d77c-29e2-4b40-bfda-49021e1913cc_wxs_gdc_realn.bam 27629234279 BAM harmonized CPTAC3 a7616be3-f9bb-460d-9fde-590d340f65cc c207782f534212d3b8f16afb5660c8fd {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01417.WXS.N C3N-01417 LUAD WXS blood_normal CPT0108220004 CPT0108220004.WholeExome.RP-1303.bam 24137196286 BAM aligned CPTAC3 8a50f3de-16a4-466d-b612-699283bf3822 982eaccb82aed8ff98d9be5d37b624b4 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01417.WXS.N.hg38 C3N-01417 LUAD WXS blood_normal CPT0108220004 f37e81f6-1671-4e3d-a651-7c6f9458de96_wxs_gdc_realn.bam 33377639317 BAM harmonized CPTAC3 b0e55d39-f823-42a5-a1dc-6be52fdb54eb 4bb1bbb7df97c9927b4a50fc7ee32749 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01417.WXS.T C3N-01417 LUAD WXS tumor CPT0105780009 CPT0105780009.WholeExome.RP-1303.bam 21688050232 BAM aligned CPTAC3 a681fdff-ea50-4cd7-9c28-720098dffd62 f166319b7df898bbae8c51355a813fbc {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor"} -C3N-01417.WXS.T.hg38 C3N-01417 LUAD WXS tumor CPT0105780009 9aff0957-aa05-46ff-8e72-f1766e9f011a_wxs_gdc_realn.bam 30119843260 BAM harmonized CPTAC3 1f71eccc-f761-42b6-9be7-84810f109131 d9081130bf3293db3d88ff398a79e6b3 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor"} -C3N-01419.ADD_716278e5.MethArray.Green.A C3N-01419 LUAD Methylation_Array tissue_normal CPT0118060008 203273630048_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ad890daa-667b-4a11-989c-24708529b549 c4a2a5189b2e4a51d0a1a9420053b429 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.ADD_716278e5.MethArray.Red.A C3N-01419 LUAD Methylation_Array tissue_normal CPT0118060008 203273630048_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 4a1ea9d8-30e6-4282-8b05-373843c842b5 cc6b2c0ff47be30f235f364c3cc1554c {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.ADD_716278e5.WGS.A C3N-01419 LUAD WGS tissue_normal CPT0118060008 CPT0118060008.WholeGenome.RP-1303.bam 57693916713 BAM aligned CPTAC3 5f48fc7c-cffd-488e-a7d2-0b39b62f9db2 61a18698f2d3f3fba4b14e76ee0efd41 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.ADD_716278e5.WGS.A.hg38 C3N-01419 LUAD WGS tissue_normal CPT0118060008 41fbeb7b-f0e1-4923-99d4-bf779f8459f2_wgs_gdc_realn.bam 84508537406 BAM harmonized CPTAC3 f8c153df-4c3d-43b9-b566-dba5e7402d4a 8840539f4bad17170430c1b251148cab {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.ADD_716278e5.WXS.A C3N-01419 LUAD WXS tissue_normal CPT0118060008 CPT0118060008.WholeExome.RP-1303.bam 19620688707 BAM aligned CPTAC3 6428a44f-bbc5-4a1a-a076-918ea085054d 026e5e71897df9bf48a70b96cc2ac4a2 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.ADD_716278e5.WXS.A.hg38 C3N-01419 LUAD WXS tissue_normal CPT0118060008 41fbeb7b-f0e1-4923-99d4-bf779f8459f2_wxs_gdc_realn.bam 26719876766 BAM harmonized CPTAC3 bbd7996a-16de-44ee-b0d7-959819b02e9b f5a9790e8ff6a047f147b629581f2515 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.MethArray.Green.T C3N-01419 LUAD Methylation_Array tumor CPT0118040009 203220070151_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 69fed520-468c-4014-9a62-a7eff168fe56 66c6143e8caaa31f5c5916dc714667dd {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor"} -C3N-01419.MethArray.Red.T C3N-01419 LUAD Methylation_Array tumor CPT0118040009 203220070151_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 48e7bbd4-6be2-462b-802c-aa72b695156d 2757908ad49435e3d63c1918ec5d87e0 {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor"} -C3N-01419.miRNA-Seq.A.hg38 C3N-01419 LUAD miRNA-Seq tissue_normal CPT0118060005 a3b47e97-bc4c-4415-bec4-cd7be6de9b63_mirnaseq_gdc_realn.bam 261040786 BAM harmonized CPTAC3 9911b26d-1535-405c-8a07-348e67db1e34 edfdc65121dcd1c7c6f10302ee7983fd {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.miRNA-Seq.S10_L002_R1.T C3N-01419 LUAD miRNA-Seq tumor CPT0118040006 190108_UNC31-K00269_0176_AHYGLVBBXX_TAGCTT_S10_L002_R1_001.unaln.bam 217628396 BAM S10_L002_R1 unaligned CPTAC3 636a2829-8a7f-46bb-a382-13726c393ef6 ccd61f8cf7b14c69bafd39a7a9851076 {"aliquot_tag": "ALQ_ec1a0682", "sample": "S10", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01419.miRNA-Seq.S39_L003_R1.A C3N-01419 LUAD miRNA-Seq tissue_normal CPT0118060005 190108_UNC31-K00269_0176_AHYGLVBBXX_CTATAC_S39_L003_R1_001.unaln.bam 241720051 BAM S39_L003_R1 unaligned CPTAC3 56e91617-a1e8-467b-8fec-53a6701c1abe 3d2bcf05d914d6c38e4a6e3945f24c10 {"aliquot_tag": "ALQ_fd30458", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.miRNA-Seq.T.hg38 C3N-01419 LUAD miRNA-Seq tumor CPT0118040006 fd6b897d-37b8-4cde-b0e2-4a082bc42bdd_mirnaseq_gdc_realn.bam 235681434 BAM harmonized CPTAC3 421b41a9-afc9-4018-96c1-7a904e0e516e 915abf5e5094113430103ed4afbe2a45 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor"} -C3N-01419.RNA-Seq.chimeric.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.chimeric.gdc_realn.bam 26475754 BAM chimeric harmonized CPTAC3 da9c9e3e-04e5-471f-8781-9d093bf4c1d9 71ef485224de1e9a9d991791c279b56b {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.RNA-Seq.chimeric.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.chimeric.gdc_realn.bam 30853523 BAM chimeric harmonized CPTAC3 3d43c44b-628e-4d56-92d9-67ff2c72c237 00457d93dcc99e4a857fceb7a80f11d5 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor"} -C3N-01419.RNA-Seq.genomic.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.genomic.gdc_realn.bam 9584128836 BAM genomic harmonized CPTAC3 945159da-0618-4c71-a179-2be53dcc6acc 8cae1180f8f053691c13e6906650e5a7 {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.RNA-Seq.genomic.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.genomic.gdc_realn.bam 9264924624 BAM genomic harmonized CPTAC3 8ee023cc-f6f6-4160-9225-c273606a7441 084eedc9d3828ca19cd95aca97bba323 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor"} -C3N-01419.RNA-Seq.S1_L001_R1.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3566867492 FASTQ S1_L001_R1 unaligned CPTAC3 23eda113-eb10-478b-81a6-a150dad44e0f 72ac3988ea9d72c23538f019449d675f {"aliquot_tag": "ALQ_fd30458", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.RNA-Seq.S1_L001_R2.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 3951203658 FASTQ S1_L001_R2 unaligned CPTAC3 a11b9459-305f-4346-ab6b-ff251558b79b 1112bd05d26e0245f36069431d9cf10d {"aliquot_tag": "ALQ_fd30458", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.RNA-Seq.S6_L008_R1.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4004316578 FASTQ S6_L008_R1 unaligned CPTAC3 22f0219a-0e25-4215-847f-7fb87cf8f00c 866adcbb707f46b784d40ac1fb0a4c17 {"aliquot_tag": "ALQ_ec1a0682", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01419.RNA-Seq.S6_L008_R2.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4535754942 FASTQ S6_L008_R2 unaligned CPTAC3 800d2b72-c4e3-42b9-b976-bf3216ff2412 292b1443536221f337e595d6c93d6a98 {"aliquot_tag": "ALQ_ec1a0682", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01419.RNA-Seq.transcriptome.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.transcriptome.gdc_realn.bam 11510342951 BAM transcriptome harmonized CPTAC3 0c2f77f5-2b7f-494b-a0db-6e02c6c8980e 0d6f83f68167b6d9e7c7497741a16e22 {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01419.RNA-Seq.transcriptome.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.transcriptome.gdc_realn.bam 14055168263 BAM transcriptome harmonized CPTAC3 66affcc7-5ff0-4e44-9fcd-ab745f13154c 89cf206c4bf5cb5315532e4eec540131 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor"} -C3N-01419.WGS.N C3N-01419 LUAD WGS blood_normal CPT0119310002 CPT0119310002.WholeGenome.RP-1303.bam 61749472469 BAM aligned CPTAC3 1f0aa478-aaed-4214-b69c-c791e8765ab1 bef01d5668871992b23f3ee412d5df27 {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01419.WGS.N.hg38 C3N-01419 LUAD WGS blood_normal CPT0119310002 8541ee06-47ca-4632-af45-dcf0ae9e50a2_wgs_gdc_realn.bam 90725050575 BAM harmonized CPTAC3 558c8e7a-0b8e-468a-a47d-c9ecf7f3fed5 9427e1273f17143aa67ced86a7505c9a {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01419.WGS.T C3N-01419 LUAD WGS tumor CPT0118040009 CPT0118040009.WholeGenome.RP-1303.bam 57876996791 BAM aligned CPTAC3 99832e7c-64cd-401b-92a9-934dd4941ab3 348e6ffcc2f87eb7827d975b6a11771a {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor"} -C3N-01419.WGS.T.hg38 C3N-01419 LUAD WGS tumor CPT0118040009 b6f5e659-0d84-4f62-b599-914804ce42fb_wgs_gdc_realn.bam 83725092795 BAM harmonized CPTAC3 7a83537b-30d6-4fdf-91c1-4796e008dbaf ba39972005ccf41e12cd548ea0ad9c1e {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor"} -C3N-01419.WXS.N C3N-01419 LUAD WXS blood_normal CPT0119310002 CPT0119310002.WholeExome.RP-1303.bam 16352888808 BAM aligned CPTAC3 c8952583-d0ce-4cb1-a947-c99c70ec91f2 d22cf5eec473c592dcce2aa8a866233d {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01419.WXS.N.hg38 C3N-01419 LUAD WXS blood_normal CPT0119310002 8541ee06-47ca-4632-af45-dcf0ae9e50a2_wxs_gdc_realn.bam 22949472162 BAM harmonized CPTAC3 7bad8534-983e-4be5-95ac-1b2c6a264267 b7c07b191129f30704a47d9b93003305 {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal"} -C3N-01419.WXS.T C3N-01419 LUAD WXS tumor CPT0118040009 CPT0118040009.WholeExome.RP-1303.bam 22614668149 BAM aligned CPTAC3 64662474-47f1-4aeb-8139-517018852172 61acffc16f8911b63f4e802823f55fdc {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor"} -C3N-01419.WXS.T.hg38 C3N-01419 LUAD WXS tumor CPT0118040009 b6f5e659-0d84-4f62-b599-914804ce42fb_wxs_gdc_realn.bam 31152710196 BAM harmonized CPTAC3 fd2a837e-1888-4a62-b3f6-0c460ddb6660 949aaae458c3eee27659c18dbf3a102d {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor"} -C3N-01488.MethArray.Green.A C3N-01488 LUAD Methylation_Array tissue_normal CPT0118180009 203027380028_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 76583378-97ff-4ad6-8e23-2c7c1b325000 82a38fb371bf24781861bb02b62037f3 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.MethArray.Green.T C3N-01488 LUAD Methylation_Array tumor CPT0118160009 202234370119_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4a4e6ee3-5da1-48aa-b06c-38779c1a0192 b360d5b8c605b4b243ebd0003c82ffe2 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor"} -C3N-01488.MethArray.Red.A C3N-01488 LUAD Methylation_Array tissue_normal CPT0118180009 203027380028_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 5fab6cee-f771-4ff7-9f1c-bd5a11196343 9729619f6bbf8437eb0a2e5fee424f04 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.MethArray.Red.T C3N-01488 LUAD Methylation_Array tumor CPT0118160009 202234370119_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 d6e152b7-5f0d-4de7-a502-218f7a41861b 2596f79239c09eb5d2bbd9d098036280 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor"} -C3N-01488.miRNA-Seq.A.hg38 C3N-01488 LUAD miRNA-Seq tissue_normal CPT0118180006 74c12463-9703-4484-bd4f-e26cbcc53c7d_mirnaseq_gdc_realn.bam 299150060 BAM harmonized CPTAC3 016b20ea-10dc-4d75-b997-6f0e6caac772 4a224c169e75ad3a61a1885b21d20e68 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.miRNA-Seq.S35_L005_R1.A C3N-01488 LUAD miRNA-Seq tissue_normal CPT0118180006 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L005_R1_001.unaln.bam 271006780 BAM S35_L005_R1 unaligned CPTAC3 4f95bca3-e9e8-4535-bde2-1f19799a6411 05300ab5806d59d95cb56fbe2a4ee187 {"aliquot_tag": "ALQ_e2b63826", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.miRNA-Seq.S6_L004_R1.T C3N-01488 LUAD miRNA-Seq tumor CPT0118160006 181119_UNC31-K00269_0165_AH27WCBBXY_CACCGG_S6_L004_R1_001.unaln.bam 297695056 BAM S6_L004_R1 unaligned CPTAC3 649729f4-f4f0-494c-9218-1b1f231195a3 6cec4b0f3aabbff8a86e927847818723 {"aliquot_tag": "ALQ_5d868647", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01488.miRNA-Seq.T.hg38 C3N-01488 LUAD miRNA-Seq tumor CPT0118160006 1009e10d-7d6d-448a-8035-f740a850f697_mirnaseq_gdc_realn.bam 322692858 BAM harmonized CPTAC3 02d12d19-2a97-4b07-9c5b-0cc7226c7efd 37db12be8a81b019d2bd0abcb1e44830 {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor"} -C3N-01488.RNA-Seq.chimeric.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.chimeric.gdc_realn.bam 136231259 BAM chimeric harmonized CPTAC3 29ab4188-4252-4bcc-b90a-cae41b07c34c 998a0df3ad9d25a97b99ab877340b1d2 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.RNA-Seq.chimeric.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.chimeric.gdc_realn.bam 159849586 BAM chimeric harmonized CPTAC3 0329d3c6-b422-4a0e-9894-1ccaf2aa5797 5c48f33a2d13ae0092cea0775b572446 {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor"} -C3N-01488.RNA-Seq.genomic.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.genomic.gdc_realn.bam 8925367906 BAM genomic harmonized CPTAC3 519905ab-966f-440b-87bd-f1075daa50fa 7bc5a8a4e38496468a7852f17a093674 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.RNA-Seq.genomic.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.genomic.gdc_realn.bam 9944416505 BAM genomic harmonized CPTAC3 4b875c3c-e87d-4610-9877-c870fc2b0649 a78b184214b3e5d392838e23b8e5c864 {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor"} -C3N-01488.RNA-Seq.S20_L006_R1.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R1_001.fastq.gz 3923087012 FASTQ S20_L006_R1 unaligned CPTAC3 d68369b9-dafa-448b-86e3-cc76f75c78da 4dc3b42a9c628465690f0ff8d5a97d28 {"aliquot_tag": "ALQ_e2b63826", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.RNA-Seq.S20_L006_R2.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R2_001.fastq.gz 4494329726 FASTQ S20_L006_R2 unaligned CPTAC3 446391d3-8bfc-4326-924b-218583233ba8 e2c5d95fb1dc72d1593b568b41cf0d46 {"aliquot_tag": "ALQ_e2b63826", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.RNA-Seq.S6_L002_R1.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 4233657580 FASTQ S6_L002_R1 unaligned CPTAC3 b9e97367-0fdb-41e2-8917-0a8fcce33380 3b5d2f8ccefa39c2f207cb587ba90aa2 {"aliquot_tag": "ALQ_5d868647", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01488.RNA-Seq.S6_L002_R2.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 4781371278 FASTQ S6_L002_R2 unaligned CPTAC3 0547b0d9-70e1-4dfe-a7e6-1f84f7508bfc 9206bbb6415d8ac00f25f8d7df917f6f {"aliquot_tag": "ALQ_5d868647", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01488.RNA-Seq.transcriptome.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.transcriptome.gdc_realn.bam 10038412636 BAM transcriptome harmonized CPTAC3 e6a87dd0-9229-4496-b100-79be6cde5da7 b3ece28ea9974f4e87aaa5f372dc8421 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.RNA-Seq.transcriptome.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.transcriptome.gdc_realn.bam 10304122885 BAM transcriptome harmonized CPTAC3 07d7f8ad-3528-4f3d-8ae6-830d0f80c36e 67023966be45f5fad0fdd1fd1cd1046b {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor"} -C3N-01488.WGS.A C3N-01488 LUAD WGS tissue_normal CPT0118180009 CPT0118180009.WholeGenome.RP-1303.bam 62739560675 BAM aligned CPTAC3 3e73c9ae-88b9-4888-a5ca-34d82d8b5baf bf722681ed9fddc6c7404a258ade6664 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.WGS.A.hg38 C3N-01488 LUAD WGS tissue_normal CPT0118180009 148d9024-68ee-4502-aef0-f8debe1caf14_wgs_gdc_realn.bam 91346927584 BAM harmonized CPTAC3 0b77ff46-2fe1-4055-b0fd-fe3d9dd124a1 b2d69f21ae6d6247d87f59d9fb6c23ef {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.WGS.N C3N-01488 LUAD WGS blood_normal CPT0119390002 CPT0119390002.WholeGenome.RP-1303.bam 70540645458 BAM aligned CPTAC3 4e22c59a-964f-4614-afc9-61138839045e 66ffdf1de17f635020d77ec34ea96d3e {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01488.WGS.N.hg38 C3N-01488 LUAD WGS blood_normal CPT0119390002 8d3645e3-7f42-4816-8bb0-7cdcd9612242_wgs_gdc_realn.bam 103681430429 BAM harmonized CPTAC3 87bce221-0796-41d0-bc03-2a03a762dd4a 72dd3b6d62886ca9627a22a23c2b8ec1 {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01488.WGS.T C3N-01488 LUAD WGS tumor CPT0118160009 CPT0118160009.WholeGenome.RP-1303.bam 64915236701 BAM aligned CPTAC3 a8d8d997-5f93-4cd9-8628-13b42e333af3 7bfaa49c39f32746ed4a257c9664a2e6 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor"} -C3N-01488.WGS.T.hg38 C3N-01488 LUAD WGS tumor CPT0118160009 04be411c-0dbb-46fc-a856-6657032723ab_wgs_gdc_realn.bam 95125244771 BAM harmonized CPTAC3 96a7e151-42f5-4f57-8d45-50c13e43468f 4f20a0b35b015c0c57d3c345647808b8 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor"} -C3N-01488.WXS.A C3N-01488 LUAD WXS tissue_normal CPT0118180009 CPT0118180009.WholeExome.RP-1303.bam 37949661867 BAM aligned CPTAC3 7c356cf5-e5d2-46d5-96fb-71ac3059fe37 6f4e14dcbe519a228754eeb75f17ad07 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.WXS.A.hg38 C3N-01488 LUAD WXS tissue_normal CPT0118180009 148d9024-68ee-4502-aef0-f8debe1caf14_wxs_gdc_realn.bam 50431601513 BAM harmonized CPTAC3 a4aecdb9-8acd-400e-8f80-779a7e5ef030 115292647576a6ba87587421b16862bf {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01488.WXS.N C3N-01488 LUAD WXS blood_normal CPT0119390002 CPT0119390002.WholeExome.RP-1303.bam 45221758744 BAM aligned CPTAC3 34b75e02-09e1-496b-80b8-1ff1d99fbf2b d552222467cff6b3f5d5b918cf6003c9 {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01488.WXS.N.hg38 C3N-01488 LUAD WXS blood_normal CPT0119390002 8d3645e3-7f42-4816-8bb0-7cdcd9612242_wxs_gdc_realn.bam 61160136987 BAM harmonized CPTAC3 74c4ed65-5d3c-47d2-acde-3de56c7cd361 22ffa9bb924ee3c1b3e20154838fb197 {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal"} -C3N-01488.WXS.T C3N-01488 LUAD WXS tumor CPT0118160009 CPT0118160009.WholeExome.RP-1303.bam 33203002922 BAM aligned CPTAC3 7f9ffc59-18ff-4042-90fc-5d00866f1d24 678a92bb580e0dffc705316a15774693 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor"} -C3N-01488.WXS.T.hg38 C3N-01488 LUAD WXS tumor CPT0118160009 04be411c-0dbb-46fc-a856-6657032723ab_wxs_gdc_realn.bam 44846579599 BAM harmonized CPTAC3 7e8c2099-ed79-4b7c-aa3d-f29c798b5296 816dd211bcb7d8675a30ed64ca445e4f {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor"} -C3N-01489.MethArray.Green.A C3N-01489 LUAD Methylation_Array tissue_normal CPT0105980009 203027390049_R03C01_Grn.idat 13676229 IDAT Green NA CPTAC3 01326e6a-0f8e-41b0-b76c-406f5498a2c0 4fff9edf7a74edd1aafdd1b6de35425e {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.MethArray.Green.T C3N-01489 LUAD Methylation_Array tumor CPT0105940009 202234380069_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b4134bd9-5efe-4fef-b2a7-7620ac728aab 5238bf6cf75e884c8df4b150f10bcc18 {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor"} -C3N-01489.MethArray.Red.A C3N-01489 LUAD Methylation_Array tissue_normal CPT0105980009 203027390049_R03C01_Red.idat 13676229 IDAT Red NA CPTAC3 6fd8221a-b7f3-4863-b63d-c4f9bdb623a1 130a3029904c29896b63ccd44efedbfa {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.MethArray.Red.T C3N-01489 LUAD Methylation_Array tumor CPT0105940009 202234380069_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 98bc2367-6d4b-4c25-bbed-d19f6c9b273e 665fd17c720310ee85aa2039940618ca {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor"} -C3N-01489.miRNA-Seq.A.hg38 C3N-01489 LUAD miRNA-Seq tissue_normal CPT0105980006 2305cf9b-f8fd-488c-bf2f-e2637aa6cc52_mirnaseq_gdc_realn.bam 264074790 BAM harmonized CPTAC3 52ff9226-8246-499b-b9ee-227e898bac6c fb96d47c40dde29ef192e16d1b226ef4 {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.miRNA-Seq.S32_L005_R1.A C3N-01489 LUAD miRNA-Seq tissue_normal CPT0105980006 181108_UNC31-K00269_0162_AH255GBBXY_ACTTGA_S32_L005_R1_001.unaln.bam 237401103 BAM S32_L005_R1 unaligned CPTAC3 384830c1-e828-49ea-b76a-57573622a63b cb855ae7af7d001d5cdf575ba2f8a5fa {"aliquot_tag": "ALQ_a398db15", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.miRNA-Seq.S35_L002_R1.T C3N-01489 LUAD miRNA-Seq tumor CPT0105940006 181113_UNC31-K00269_0164_AH23NNBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 207381251 BAM S35_L002_R1 unaligned CPTAC3 f5e363ac-68ff-4b09-a2db-fadc297003d5 97e800872f334bd0125e3c022dd51112 {"aliquot_tag": "ALQ_66683614", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01489.miRNA-Seq.T.hg38 C3N-01489 LUAD miRNA-Seq tumor CPT0105940006 6d516955-0fe2-4f55-97e8-f907007aa30c_mirnaseq_gdc_realn.bam 223053864 BAM harmonized CPTAC3 d22958da-5c18-46c8-80b4-4b450fc504de c7c911ccebbf878d88d02c2f10a8828d {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor"} -C3N-01489.RNA-Seq.chimeric.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.chimeric.gdc_realn.bam 106812053 BAM chimeric harmonized CPTAC3 12c2c061-c04d-41bf-a9e6-ebf66a8077b3 b430685a50d50ec252a273b783fc81a3 {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.RNA-Seq.chimeric.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.chimeric.gdc_realn.bam 99597541 BAM chimeric harmonized CPTAC3 7461f4c4-8639-4816-869e-0b00e00bf23c 04c07e8a07eac5672813ab4c249ae370 {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor"} -C3N-01489.RNA-Seq.genomic.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.genomic.gdc_realn.bam 8467021079 BAM genomic harmonized CPTAC3 bf010ff5-6787-46fa-9885-a140be5eb8ac b54a0cf5cde565bb1f8ad8242d01cb05 {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.RNA-Seq.genomic.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.genomic.gdc_realn.bam 9842058607 BAM genomic harmonized CPTAC3 e288582f-3a96-4c2f-8b25-1818c39d8e96 28887a13797a2b8496b4a7560acb9030 {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor"} -C3N-01489.RNA-Seq.S1_L007_R1.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R1_001.fastq.gz 3710045856 FASTQ S1_L007_R1 unaligned CPTAC3 d568a0a1-fc3c-4523-9b73-a8f5d096a49b 4178b6c778c48555d670b0cd1fb90029 {"aliquot_tag": "ALQ_66683614", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01489.RNA-Seq.S1_L007_R2.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R2_001.fastq.gz 4288829996 FASTQ S1_L007_R2 unaligned CPTAC3 27e3faae-2c1c-418b-87ed-d5f4edfe4384 527a84aa2633450116dd76c74cc6fca6 {"aliquot_tag": "ALQ_66683614", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01489.RNA-Seq.S2_L007_R1.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R1_001.fastq.gz 3950047611 FASTQ S2_L007_R1 unaligned CPTAC3 5a005f8b-888a-457a-adbf-60aa21276621 42d9406da3be37c5dbe358ba3f39090a {"aliquot_tag": "ALQ_a398db15", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.RNA-Seq.S2_L007_R2.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R2_001.fastq.gz 4342548898 FASTQ S2_L007_R2 unaligned CPTAC3 48895b66-ca1f-4f49-905c-4ffcaa748766 4706371812d5b1d82f1c2c7bb1f4b351 {"aliquot_tag": "ALQ_a398db15", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.RNA-Seq.transcriptome.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.transcriptome.gdc_realn.bam 10013477633 BAM transcriptome harmonized CPTAC3 f3718ead-6aa7-436b-9f20-f1cbecbe0fc0 b27e937201bdeb274ae23b68b6d8cbbd {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.RNA-Seq.transcriptome.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.transcriptome.gdc_realn.bam 9834031061 BAM transcriptome harmonized CPTAC3 b52c3bb8-4b73-4c04-b6be-28a4d48546e6 411304ca0a14e19c7ffd6bb38467a885 {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor"} -C3N-01489.WGS.A C3N-01489 LUAD WGS tissue_normal CPT0105980009 CPT0105980009.WholeGenome.RP-1303.bam 68757317421 BAM aligned CPTAC3 1704dcf4-482a-498d-8d49-b90c3f798a61 4112f14493d565a5d9f47429cc7449ce {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.WGS.A.hg38 C3N-01489 LUAD WGS tissue_normal CPT0105980009 9803ad5a-3b06-433f-95eb-f64b5e54717a_wgs_gdc_realn.bam 99731976043 BAM harmonized CPTAC3 7779cf3a-d11d-4d99-b8a1-b7fd1d66cb38 1111e9a1cb6ce16765764539ceed2624 {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.WGS.N C3N-01489 LUAD WGS blood_normal CPT0108270002 CPT0108270002.WholeGenome.RP-1303.bam 61441261448 BAM aligned CPTAC3 6399878c-aa83-4697-9d57-a801eed3a410 b94f8052df93c2e33eeb19b6a5276bdf {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal"} -C3N-01489.WGS.N.hg38 C3N-01489 LUAD WGS blood_normal CPT0108270002 109c49c2-5da7-479e-ae3e-2faf07ae9244_wgs_gdc_realn.bam 90711217036 BAM harmonized CPTAC3 3be59a0e-af84-46ed-93cc-bcbf78120232 0007ddd8c88bea98e5b792b09b3b4564 {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal"} -C3N-01489.WGS.T C3N-01489 LUAD WGS tumor CPT0105940009 CPT0105940009.WholeGenome.RP-1303.bam 60019924422 BAM aligned CPTAC3 b46cbecb-69be-4862-8b2a-bf74e5d6069b a3ebf430a325702d49967b0d6746128f {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor"} -C3N-01489.WGS.T.hg38 C3N-01489 LUAD WGS tumor CPT0105940009 430ae4b9-2dbc-4a3c-a397-2baf354b13a5_wgs_gdc_realn.bam 87727255836 BAM harmonized CPTAC3 3a51b60c-f3a8-42c5-95ac-3157c2b05073 4314c35503adf3a830d78542cfef3e20 {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor"} -C3N-01489.WXS.A C3N-01489 LUAD WXS tissue_normal CPT0105980009 CPT0105980009.WholeExome.RP-1303.bam 45567868944 BAM aligned CPTAC3 76b3591d-638f-4182-b1db-a224e7bbb3f5 a61ea8400ef433d66a526d584b0a5268 {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.WXS.A.hg38 C3N-01489 LUAD WXS tissue_normal CPT0105980009 9803ad5a-3b06-433f-95eb-f64b5e54717a_wxs_gdc_realn.bam 61577224753 BAM harmonized CPTAC3 ac712c08-c794-4736-ad32-63782443293d d5966135cf68fd3eabe0df98fbdb44e0 {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01489.WXS.N C3N-01489 LUAD WXS blood_normal CPT0108270002 CPT0108270002.WholeExome.RP-1303.bam 38594500127 BAM aligned CPTAC3 1e3eda3f-da5a-45c6-b3bb-c67b57f0104e 59ebfce38c3a3e8d8eae6d40b59100fd {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal"} -C3N-01489.WXS.N.hg38 C3N-01489 LUAD WXS blood_normal CPT0108270002 109c49c2-5da7-479e-ae3e-2faf07ae9244_wxs_gdc_realn.bam 52853972717 BAM harmonized CPTAC3 c5a6d394-659c-43cf-8b4f-e7d637d4430e 8c92834850224b4191d13c739688a5ed {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal"} -C3N-01489.WXS.T C3N-01489 LUAD WXS tumor CPT0105940009 CPT0105940009.WholeExome.RP-1303.bam 26982320409 BAM aligned CPTAC3 f57b6c5a-2e3c-410f-b0ed-db06b57bb59c 23e643c40a6e93f0a5dab549e5dd04e0 {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor"} -C3N-01489.WXS.T.hg38 C3N-01489 LUAD WXS tumor CPT0105940009 430ae4b9-2dbc-4a3c-a397-2baf354b13a5_wxs_gdc_realn.bam 37205601233 BAM harmonized CPTAC3 78b86af9-8dec-45da-b00f-211f7ac8c5e2 7f6b6c008769818e6945592314369eca {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor"} -C3N-01502.ADD_17a18cea.MethArray.Green.T C3N-01502 PDA Methylation_Array tumor CPT0065570009 202184990052_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 679f1d0f-c921-4325-b404-260a475ccc44 cf7581ce6f668c7e900511a5c235e58e {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01502.ADD_17a18cea.MethArray.Red.T C3N-01502 PDA Methylation_Array tumor CPT0065570009 202184990052_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8a8e12dc-7e97-4f17-9755-17c6fe9285b0 df448cb5b05c10f815e3f7a2bdc6e4ea {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01502.ADD_17a18cea.WGS.T C3N-01502 PDA WGS tumor CPT0065570009 CPT0065570009.WholeGenome.RP-1303.bam 69797664919 BAM aligned CPTAC3 73ae0bb6-13ae-496e-ab52-32bda494159f f72616c12ebbdd44350fbc382166e72b {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01502.ADD_17a18cea.WGS.T.hg38 C3N-01502 PDA WGS tumor CPT0065570009 8c9b3147-4bf6-42f3-838e-b257eaa4b898_gdc_realn.bam 105875055640 BAM harmonized CPTAC3 18992ff2-d652-4450-a037-d477d50b7245 fe1a74f591597373c298bec74944d515 {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01502.ADD_17a18cea.WXS.T C3N-01502 PDA WXS tumor CPT0065570009 CPT0065570009.WholeExome.RP-1303.bam 28394673755 BAM aligned CPTAC3 c76e8040-7565-4a8e-b160-b7efdf6d0daf 00d47d551c510efeca42923d3b0dcedb {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01502.ADD_17a18cea.WXS.T.hg38 C3N-01502 PDA WXS tumor CPT0065570009 8c9b3147-4bf6-42f3-838e-b257eaa4b898_gdc_realn.bam 39091179857 BAM harmonized CPTAC3 a87b3f34-3f83-4d33-9f2d-91a38f585471 c5641321d01bf84c3a4b706ad932ad93 {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor"} -C3N-01502.miRNA-Seq.S12_L001_R1.T C3N-01502 PDA miRNA-Seq tumor CPT0065570006 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L001_R1_001.unaln.bam 224703888 BAM S12_L001_R1 unaligned CPTAC3 3bb977cf-f8b0-4be3-8233-c7774353fe60 dc69d96706a1a44780fd220d710b00ab {"aliquot_tag": "ALQ_871e917b", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01502.miRNA-Seq.T.hg38 C3N-01502 PDA miRNA-Seq tumor CPT0065570006 a466c026-74d9-46b7-8163-46fabab9b1f9_mirnaseq_gdc_realn.bam 247185270 BAM harmonized CPTAC3 3085592d-cd8d-405e-81ef-b321df20e6eb 0e0ed0a4f10629229753eb6ec08c563e {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor"} -C3N-01502.RNA-Seq.chimeric.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.chimeric.gdc_realn.bam 25542244 BAM chimeric harmonized CPTAC3 29627747-eed3-4fd7-bfd1-01ca64e7994b 8c7de779f9900b8268ea31e7a10e7103 {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor"} -C3N-01502.RNA-Seq.genomic.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.genomic.gdc_realn.bam 9849420953 BAM genomic harmonized CPTAC3 b963d3ea-37c6-495f-9420-629a9aba1fb0 72e375cf6800fb570b6c16945ebb8bba {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor"} -C3N-01502.RNA-Seq.S4_L001_R1.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R1_001.fastq.gz 3950291517 FASTQ S4_L001_R1 unaligned CPTAC3 1160e253-5400-4f77-8e84-f6dfe6176fad d1dbe2f221a28d85af4d144eb716070b {"aliquot_tag": "ALQ_871e917b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01502.RNA-Seq.S4_L001_R2.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R2_001.fastq.gz 4075095135 FASTQ S4_L001_R2 unaligned CPTAC3 0e8256ed-01e1-4440-88c0-68a96bb0e4a4 4fadbfe5aad6ab4221e86dfaf2768f51 {"aliquot_tag": "ALQ_871e917b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01502.RNA-Seq.transcriptome.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.transcriptome.gdc_realn.bam 9841173061 BAM transcriptome harmonized CPTAC3 f8c981dd-8b5d-48d8-b76d-5b81d9e1261d 5bf5173bd9f7b467a5fafa1d6ec7dfc3 {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor"} -C3N-01502.WGS.N C3N-01502 PDA WGS blood_normal CPT0070700002 CPT0070700002.WholeGenome.RP-1303.bam 88534643472 BAM aligned CPTAC3 eec33d57-ffdc-4f56-9aa4-ce8276b7e49d 719b7b9b87a7fc4fc7c7271a71c8fb57 {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal"} -C3N-01502.WGS.N.hg38 C3N-01502 PDA WGS blood_normal CPT0070700002 90fad112-7ec0-43d1-9293-731150d95deb_gdc_realn.bam 132609636824 BAM harmonized CPTAC3 073dcaea-3c85-4618-b6a5-30fc9397ff6a 0726c5a5f38c354ef3ab4c40250925c7 {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal"} -C3N-01502.WXS.N C3N-01502 PDA WXS blood_normal CPT0070700002 CPT0070700002.WholeExome.RP-1303.bam 35569421100 BAM aligned CPTAC3 f12f1746-e8eb-4011-a0d8-160c7096cb99 99675bd94864513c8957757652c9d2c5 {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal"} -C3N-01502.WXS.N.hg38 C3N-01502 PDA WXS blood_normal CPT0070700002 90fad112-7ec0-43d1-9293-731150d95deb_gdc_realn.bam 48693181748 BAM harmonized CPTAC3 dff9e346-18f3-43bb-9bc8-99f155d3e347 5dd0dddc4846edb63204f36c7600597b {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal"} -C3N-01502.WXS.T C3N-01502 PDA WXS tumor CPT0065570009_1 CPT0065570009_1.WholeExome.RP-1303.bam 56101879612 BAM aligned CPTAC3 96936d47-f852-4953-939c-9c565b6cff17 287bf9db2d3c1902caf58f045ddec45c {"aliquot_tag": "ALQ_6dbb9092", "gdc_sample_type": "Primary Tumor"} -C3N-01502.WXS.T.hg38 C3N-01502 PDA WXS tumor CPT0065570009_1 48f1b9b8-4725-4465-af3d-a86822eac545_wxs_gdc_realn.bam 77001496586 BAM harmonized CPTAC3 224879d2-8105-4028-a90e-615fab8c240c dfc4fa3524d61c8d52e65fdc8bb22980 {"aliquot_tag": "ALQ_6dbb9092", "gdc_sample_type": "Primary Tumor"} -C3N-01505.MethArray.Green.T C3N-01505 GBM Methylation_Array tumor CPT0089150009 202234360009_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9bbe8147-627f-4482-8958-ce67c5278244 7a07e7b54652a7c502d49b24ff613bb3 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor"} -C3N-01505.MethArray.Red.T C3N-01505 GBM Methylation_Array tumor CPT0089150009 202234360009_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6e105bc1-e17d-4338-8880-bb0712b5c3aa 95104930666a742f21c67a93696e2a5f {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor"} -C3N-01505.miRNA-Seq.S3_L007_R1.T C3N-01505 GBM miRNA-Seq tumor CPT0089150006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATTCCT_S3_L007_R1_001.unaln.bam 202941163 BAM S3_L007_R1 unaligned CPTAC3 01ac63d2-73e4-4a02-80cf-2c9b24969b03 d6ae1c47a0c0237e8cf5566852da9a39 {"aliquot_tag": "ALQ_b465f84b", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01505.miRNA-Seq.T.hg38 C3N-01505 GBM miRNA-Seq tumor CPT0089150006 1bb7c639-e130-42b3-a721-8ac016f7e5ff_mirnaseq_gdc_realn.bam 227043971 BAM harmonized CPTAC3 0ef843df-001f-4f98-8696-2c939da64e5f 7314c3eed77ddaf01a9bb194a76141ef {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor"} -C3N-01505.RNA-Seq.chimeric.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.chimeric.gdc_realn.bam 43930093 BAM chimeric harmonized CPTAC3 e382185f-f57d-4ef2-9342-614468ee0a4c d60c0884bd25486ec881a8012a62b290 {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor"} -C3N-01505.RNA-Seq.genomic.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.genomic.gdc_realn.bam 9301401147 BAM genomic harmonized CPTAC3 c92e8dd5-e49c-49de-96cf-e1f2c7a3d7a2 c5d8c60e5401be0cd975248a7f53f081 {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor"} -C3N-01505.RNA-Seq.S8_L007_R1.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R1_001.fastq.gz 4394536669 FASTQ S8_L007_R1 unaligned CPTAC3 ae912b64-4bdb-4a13-8b73-87bb12c0b91d ab089db04ace302e735640050952ce3e {"aliquot_tag": "ALQ_b465f84b", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01505.RNA-Seq.S8_L007_R2.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R2_001.fastq.gz 4755808924 FASTQ S8_L007_R2 unaligned CPTAC3 e6967824-e7b5-4e93-b0d9-d83a178cb330 e9f33dfd2766846203e253420985c5ed {"aliquot_tag": "ALQ_b465f84b", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01505.RNA-Seq.transcriptome.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.transcriptome.gdc_realn.bam 11263981848 BAM transcriptome harmonized CPTAC3 86228e13-3955-4851-891c-0c688d41c51b 481e8f849825f41a2727adcb0985982a {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor"} -C3N-01505.WGS.N C3N-01505 GBM WGS blood_normal CPT0091300002 CPT0091300002.WholeGenome.RP-1303.bam 70461521289 BAM aligned CPTAC3 2ef1a4d2-22e3-439a-ac88-8d8d98417c92 b4a700ebad78478478effa925eb6f6df {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01505.WGS.N.hg38 C3N-01505 GBM WGS blood_normal CPT0091300002 087bdb48-d63e-46d0-96d1-1915276d5fb6_wgs_gdc_realn.bam 103578718945 BAM harmonized CPTAC3 4c49660d-60b1-40a4-9669-3aabc6c5ced2 a7e4e4a18f9aa6a2809d5e19466814ab {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01505.WGS.T C3N-01505 GBM WGS tumor CPT0089150009 CPT0089150009.WholeGenome.RP-1303.bam 76929538614 BAM aligned CPTAC3 3fecf492-3f49-4863-82c4-fe0e1f3e99ac 628f9efff135e97a5a551a0819b695d4 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor"} -C3N-01505.WGS.T.hg38 C3N-01505 GBM WGS tumor CPT0089150009 c51f48fb-4a71-430b-8492-cecd49c158d4_wgs_gdc_realn.bam 112049041549 BAM harmonized CPTAC3 46030a49-3f35-442f-865c-2d7f298344ee 246440d0060c84244eea047d393b5996 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor"} -C3N-01505.WXS.N C3N-01505 GBM WXS blood_normal CPT0091300002 CPT0091300002.WholeExome.RP-1303.bam 33488019775 BAM aligned CPTAC3 5074c7bc-8589-444f-b3dd-62836a7be360 ec29c9ae85f00049a4ce24cec841e180 {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01505.WXS.N.hg38 C3N-01505 GBM WXS blood_normal CPT0091300002 087bdb48-d63e-46d0-96d1-1915276d5fb6_wxs_gdc_realn.bam 45971361686 BAM harmonized CPTAC3 202860b1-7166-46a7-a18c-32b907a8fc39 74a5eee39907f858bb45a252d64e8586 {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01505.WXS.T C3N-01505 GBM WXS tumor CPT0089150009 CPT0089150009.WholeExome.RP-1303.bam 43202073680 BAM aligned CPTAC3 bc3e327f-d888-441f-a8b4-c12ae3259554 8d3dd2c623b4a55893dc87a1b3e09f0d {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor"} -C3N-01505.WXS.T.hg38 C3N-01505 GBM WXS tumor CPT0089150009 c51f48fb-4a71-430b-8492-cecd49c158d4_wxs_gdc_realn.bam 59752261992 BAM harmonized CPTAC3 b994ca41-5e1c-4bc1-9b92-bc93f3fc1483 00c6f7be6d8ec596ec7ed1091f1ce3f0 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor"} -C3N-01510.MethArray.Green.T C3N-01510 UCEC Methylation_Array tumor CPT0079650009 202178770006_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4af3e3ce-431a-4fc6-b669-651aa6aa3f31 fcd3a75d8d0a2c86b2a82ade9c4a3b82 {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor"} -C3N-01510.MethArray.Red.T C3N-01510 UCEC Methylation_Array tumor CPT0079650009 202178770006_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e0efd557-7854-4b60-a51d-f13bce101333 5bc04861ce61b15b2c86f661250cff4c {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor"} -C3N-01510.miRNA-Seq.S12_L001_R1.T C3N-01510 UCEC miRNA-Seq tumor CPT0079650006 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L001_R1_001.unaln.bam 173577245 BAM S12_L001_R1 unaligned CPTAC3 f6b7de9b-f86c-4741-a0ac-9a382df59c0a 4c862c2e18efebda97e1b7c7658e3aed {"aliquot_tag": "ALQ_7040da5f", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01510.miRNA-Seq.T.hg38 C3N-01510 UCEC miRNA-Seq tumor CPT0079650006 b993c95c-2d97-4c3f-a7ee-4a655883192f_mirnaseq_gdc_realn.bam 189496117 BAM harmonized CPTAC3 56c3bcd0-a695-4d1c-a761-90353e1c8490 899fceb5666cd87bcf58ca05b15ec994 {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.chimeric.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.chimeric.gdc_realn.bam 44616872 BAM chimeric harmonized CPTAC3 bf78d448-b106-4727-8fac-2d769b7bbf65 524f25d56788e2154874fd152bc9508c {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.chimeric.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.chimeric.gdc_realn.bam 59416409 BAM chimeric harmonized CPTAC3 f8d32784-24fd-423e-9ace-34fe0491a1dd 115d4ae4d80646a52b4dcbf341f37818 {"aliquot_tag": "ALQ_ed981329", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.genomic.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.genomic.gdc_realn.bam 8262375143 BAM genomic harmonized CPTAC3 8bce61e9-3174-491d-b3d5-eba824b1f196 75aa627c103f5f0513107a88db9ef703 {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.genomic.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.genomic.gdc_realn.bam 6800448704 BAM genomic harmonized CPTAC3 7a248e09-4ce3-4615-bf20-97e09ac52005 25fc9ec1b56e736e9fd3a5d71ef0f7df {"aliquot_tag": "ALQ_ed981329", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.S15_L004_R1.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3423529925 FASTQ S15_L004_R1 unaligned CPTAC3 9c598e26-c32b-4405-af2a-c560941fb81a c811a1f64c9a773f06ee5ada28af7217 {"aliquot_tag": "ALQ_7040da5f", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.S15_L004_R2.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 3668937274 FASTQ S15_L004_R2 unaligned CPTAC3 086afb47-3e44-4075-900f-c9efeb622959 2e5a64ce52b394eb69ba08e9f4ba885e {"aliquot_tag": "ALQ_7040da5f", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.S4_R1.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R1_001.fastq.gz 3792530392 FASTQ S4_R1 unaligned CPTAC3 e197a317-1251-4521-ad3e-f646cb1983c7 1f2d901515e77fd7b10a88faab5acfb0 {"aliquot_tag": "ALQ_ed981329", "sample": "S4", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.S4_R2.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R2_001.fastq.gz 3878269734 FASTQ S4_R2 unaligned CPTAC3 ec386050-d52d-40b8-9693-29616b999bd9 18bd60355f70537aabe783ef29f10aba {"aliquot_tag": "ALQ_ed981329", "sample": "S4", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.transcriptome.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.transcriptome.gdc_realn.bam 7734263571 BAM transcriptome harmonized CPTAC3 2e40c6e6-4733-46d1-8417-59aef23dde65 cf77a60870109ffc983f0abf9d5577c3 {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor"} -C3N-01510.RNA-Seq.transcriptome.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.transcriptome.gdc_realn.bam 4112821703 BAM transcriptome harmonized CPTAC3 9866e2e7-5d65-43c2-8cbe-416f33d7712b ad754bda54ed198e49d5e399215d3062 {"aliquot_tag": "ALQ_ed981329", "gdc_sample_type": "Primary Tumor"} -C3N-01510.WGS.N C3N-01510 UCEC WGS blood_normal CPT0080750002 CPT0080750002.WholeGenome.RP-1303.bam 61495740779 BAM aligned CPTAC3 9f2d98f1-6a52-449d-a43d-ef8945c07061 993e256019032b691a0b8ceb40c4d86d {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01510.WGS.N.hg38 C3N-01510 UCEC WGS blood_normal CPT0080750002 f8e5df28-e72a-43d1-867f-2774935b9d1b_gdc_realn.bam 91153684077 BAM harmonized CPTAC3 5ef81d6b-2d4a-4ed8-960b-eea9cf8c3598 c4c252b334e351b5b427fb356168d591 {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01510.WGS.T C3N-01510 UCEC WGS tumor CPT0079650009 CPT0079650009.WholeGenome.RP-1303.bam 61691453549 BAM aligned CPTAC3 64dde8cc-48e5-47b7-b9e8-e98451894320 b306037917e255e761c1c971dbe7ce2a {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor"} -C3N-01510.WGS.T.hg38 C3N-01510 UCEC WGS tumor CPT0079650009 6071b625-57fb-4113-9926-83e265a78d28_gdc_realn.bam 92530012976 BAM harmonized CPTAC3 f8c5708f-f692-4381-92ea-4dcf5a970d14 f0aa49de2b4ad096cb335421e051205d {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor"} -C3N-01510.WXS.N C3N-01510 UCEC WXS blood_normal CPT0080750002 CPT0080750002.WholeExome.RP-1303.bam 22326770414 BAM aligned CPTAC3 aa51f274-accb-4897-b533-cfd29ab5bd6a d6242bf63304d1f7fbb2271645f6b1b1 {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01510.WXS.N.hg38 C3N-01510 UCEC WXS blood_normal CPT0080750002 f8e5df28-e72a-43d1-867f-2774935b9d1b_gdc_realn.bam 30201932716 BAM harmonized CPTAC3 1b6a1313-bd3c-44c1-a4e6-379bee72ac96 f004cd8af6b102e5f5d56f8d960a2c68 {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01510.WXS.T C3N-01510 UCEC WXS tumor CPT0079650009 CPT0079650009.WholeExome.RP-1303.bam 33561340299 BAM aligned CPTAC3 7ac90e00-bd10-44e5-91f1-4e51b1764945 cce924e1cd8991c39b35901195e15d54 {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor"} -C3N-01510.WXS.T.hg38 C3N-01510 UCEC WXS tumor CPT0079650009 6071b625-57fb-4113-9926-83e265a78d28_gdc_realn.bam 46589333775 BAM harmonized CPTAC3 b9b9dea4-2021-4f06-8697-048fa9d1baa0 d16b2678b03045ef3df58fec223dcc1d {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor"} -C3N-01515.ADD_7f896f3c.WGS.N C3N-01515 GBM WGS blood_normal CPT0080730002 CPT0080730002.WholeGenome.RP-1303.bam 52207974955 BAM aligned CPTAC3 4755647c-2207-4dca-9a9c-6fe483da66c5 62cf6e91c8c5920e3fedb1104ffd56ea {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01515.ADD_7f896f3c.WGS.N.hg38 C3N-01515 GBM WGS blood_normal CPT0080730002 474dfea4-f2db-44d5-9f00-98c85f07f20b_wgs_gdc_realn.bam 75868489857 BAM harmonized CPTAC3 f97f390b-0bb3-499c-b6bd-00b1afce849b 570f1f7691da38e20a6e166724b2d2ae {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01515.ADD_7f896f3c.WXS.N C3N-01515 GBM WXS blood_normal CPT0080730002 CPT0080730002.WholeExome.RP-1303.bam 30433178668 BAM aligned CPTAC3 3f2264d8-4724-47d2-8dce-5ffbfeacbc29 37e514e5469bb2d156dc320816fb2ee3 {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01515.ADD_7f896f3c.WXS.N.hg38 C3N-01515 GBM WXS blood_normal CPT0080730002 474dfea4-f2db-44d5-9f00-98c85f07f20b_wxs_gdc_realn.bam 40059433644 BAM harmonized CPTAC3 2150f839-57f4-4e89-b9b1-f4b36d3c2fc0 da921f20407a7a848f6430d97d1f8d77 {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01515.MethArray.Green.T C3N-01515 GBM Methylation_Array tumor CPT0079790009 202234360009_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c7524b69-b3c0-4cf9-b7e1-f65042c77554 20320b58cfb9b5eb2abc6f33055bb2fa {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor"} -C3N-01515.MethArray.Red.T C3N-01515 GBM Methylation_Array tumor CPT0079790009 202234360009_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 137f47b7-be39-4f9a-9411-ad2cfff66d10 d6ab07ebab680a040a8b62b51529a0a4 {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor"} -C3N-01515.miRNA-Seq.S27_L008_R1.T C3N-01515 GBM miRNA-Seq tumor CPT0079790006 180724_UNC32-K00270_0106_BHWK3MBBXX_TTAGGC_S27_L008_R1_001.unaln.bam 175886263 BAM S27_L008_R1 unaligned CPTAC3 a9ce2cb9-4db9-4ef2-ac0f-b6cc7a5cbc64 34a56f4f8b39596a0b2d43562592bdca {"aliquot_tag": "ALQ_7eece4fb", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01515.miRNA-Seq.T.hg38 C3N-01515 GBM miRNA-Seq tumor CPT0079790006 66ac1084-4e2c-4376-a020-03eb4ac0035c_mirnaseq_gdc_realn.bam 194398504 BAM harmonized CPTAC3 4ff624d5-d77a-4378-ac8b-df65a8a4d732 978b573470779029d23e995f79dde381 {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor"} -C3N-01515.RNA-Seq.chimeric.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.chimeric.gdc_realn.bam 44487877 BAM chimeric harmonized CPTAC3 b60d0ba2-0ae6-4726-81df-e851f58b4bd5 8fc6d9c74536c4e69a8f4bcf0f606aaa {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor"} -C3N-01515.RNA-Seq.genomic.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.genomic.gdc_realn.bam 8690514560 BAM genomic harmonized CPTAC3 715ffbe5-efd3-4f62-9fb8-d4a13367ae40 10646a4e5ef3822f7bbda209ca07baf4 {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor"} -C3N-01515.RNA-Seq.S16_L005_R1.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R1_001.fastq.gz 3931183389 FASTQ S16_L005_R1 unaligned CPTAC3 4af57b23-c496-487d-868a-0c09c5e20ea4 05c5f57ec6e77ddd76aa065e78644ded {"aliquot_tag": "ALQ_7eece4fb", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01515.RNA-Seq.S16_L005_R2.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R2_001.fastq.gz 4328111545 FASTQ S16_L005_R2 unaligned CPTAC3 da0a144a-f03c-46e9-b35c-14b0b1a9a40c caa2d2caddf4c1c504fd1d33fe897c44 {"aliquot_tag": "ALQ_7eece4fb", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01515.RNA-Seq.transcriptome.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.transcriptome.gdc_realn.bam 10389811823 BAM transcriptome harmonized CPTAC3 82496b41-175d-4743-91e7-3065130f47ef 2a355f81e4d93840095875f67f07da0e {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor"} -C3N-01515.WGS.T C3N-01515 GBM WGS tumor CPT0079790009 CPT0079790009.WholeGenome.RP-1303.bam 63947622118 BAM aligned CPTAC3 26a06e1a-93b6-4f62-b833-c306df9a077c 7cc5fc877f9269f59fa0bbbbb0a73214 {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor"} -C3N-01515.WGS.T.hg38 C3N-01515 GBM WGS tumor CPT0079790009 d4205a17-5d31-4f86-9a43-4631df1263ab_wgs_gdc_realn.bam 94688322512 BAM harmonized CPTAC3 0a677c0b-d4b6-48c3-8cb1-f0450487c8e1 4c90eb6f9f960eed16b323e275fe1740 {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor"} -C3N-01515.WXS.T C3N-01515 GBM WXS tumor CPT0079790009 CPT0079790009.WholeExome.RP-1303.bam 37935476804 BAM aligned CPTAC3 6711ebe4-8aee-4b9a-9343-8b808ef2f55d b6d586f872d217c8ad45422c1326927a {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor"} -C3N-01515.WXS.T.hg38 C3N-01515 GBM WXS tumor CPT0079790009 d4205a17-5d31-4f86-9a43-4631df1263ab_wxs_gdc_realn.bam 51761332459 BAM harmonized CPTAC3 74431fbe-41f7-4514-9329-88da5c09fdd1 b75e51a3df40e9f64aa2456ae9327d0a {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor"} -C3N-01517.MethArray.Green.T C3N-01517 GBM Methylation_Array tumor CPT0167530006 203028200048_R07C01_Grn.idat 13676229 IDAT Green NA CPTAC3 ee436dcb-2bd8-4739-9406-a7d2bee4b7ef 4446dd74d586776bcaa254f81326e76e {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor"} -C3N-01517.MethArray.Red.T C3N-01517 GBM Methylation_Array tumor CPT0167530006 203028200048_R07C01_Red.idat 13676229 IDAT Red NA CPTAC3 a3bdeddd-5c43-4403-8516-f42f0e053036 6ea5a56535c304047a7f9e0d87619692 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor"} -C3N-01517.miRNA-Seq.S42_L002_R1.T C3N-01517 GBM miRNA-Seq tumor CPT0167530009 181119_UNC31-K00269_0165_AH27WCBBXY_GTCCGC_S42_L002_R1_001.unaln.bam 217616097 BAM S42_L002_R1 unaligned CPTAC3 17498b69-39c5-4e7c-b23a-bdd65eb3ac62 c8e81bd30ed578a679ca307c7633f1bd {"aliquot_tag": "ALQ_62c52f40", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01517.miRNA-Seq.T.hg38 C3N-01517 GBM miRNA-Seq tumor CPT0167530009 8812f0df-eeda-4fbb-a963-5e919b0383ba_mirnaseq_gdc_realn.bam 244342555 BAM harmonized CPTAC3 be32ca8b-8dc5-46d1-a4b6-1742df099b7a 9d2aff85594813da1548aeea96e20c6e {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor"} -C3N-01517.RNA-Seq.chimeric.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.chimeric.gdc_realn.bam 27421115 BAM chimeric harmonized CPTAC3 5acc91fd-6eed-4168-b4a5-4fa758d4d66c ba820a18cfc9362881d9c24c062337ef {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor"} -C3N-01517.RNA-Seq.genomic.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.genomic.gdc_realn.bam 7634364751 BAM genomic harmonized CPTAC3 fe11a9d7-7d78-44b5-b36c-d7d789f752bc 4043d2d047af303b3f7b0b41b9cbb0ee {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor"} -C3N-01517.RNA-Seq.S2_L007_R1.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3618364620 FASTQ S2_L007_R1 unaligned CPTAC3 6a90c04b-6626-4980-82b7-ecbd0efbbedf a27195b5588e5805cb308362a5ed2ef5 {"aliquot_tag": "ALQ_62c52f40", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01517.RNA-Seq.S2_L007_R2.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3779835090 FASTQ S2_L007_R2 unaligned CPTAC3 0cad2950-450a-41ad-9c84-42c8a152b18d 6675d94e2196c435392b2c0d067880ce {"aliquot_tag": "ALQ_62c52f40", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01517.RNA-Seq.transcriptome.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.transcriptome.gdc_realn.bam 9580961058 BAM transcriptome harmonized CPTAC3 e7c3da61-a6bd-4c23-8dfd-3d3981462a1a a3bf77a34ec0e539e754c7f912ac96cf {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor"} -C3N-01517.WGS.N C3N-01517 GBM WGS blood_normal CPT0167590002 CPT0167590002.WholeGenome.RP-1303.bam 66236518222 BAM aligned CPTAC3 8a5f9098-6a49-4b60-be2d-2e2b86d1f208 208cbfcf3367a73f7992801bf6a64f73 {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal"} -C3N-01517.WGS.N.hg38 C3N-01517 GBM WGS blood_normal CPT0167590002 c5532f02-56c1-4f58-8b21-238146948cf5_wgs_gdc_realn.bam 95893216700 BAM harmonized CPTAC3 99114da3-f483-48a9-bdad-c734fa942f52 5440d8a6d29eea51e7a32a7ed9b0f51f {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal"} -C3N-01517.WGS.T C3N-01517 GBM WGS tumor CPT0167530006 CPT0167530006.WholeGenome.RP-1303.bam 52528939852 BAM aligned CPTAC3 9ec6fa98-38f1-4f9b-8d1a-44c17497dc1c 6355e50226434e218defc8555de4b16f {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor"} -C3N-01517.WGS.T.hg38 C3N-01517 GBM WGS tumor CPT0167530006 17b3d2e1-0d12-438c-88ec-a8e7acf2f565_wgs_gdc_realn.bam 77834799761 BAM harmonized CPTAC3 693f85ac-183b-4e68-817e-e2c16c0b874b 0bc801f1920fb635e9eccb762d00d592 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor"} -C3N-01517.WXS.N C3N-01517 GBM WXS blood_normal CPT0167590002 CPT0167590002.WholeExome.RP-1303.bam 26810182420 BAM aligned CPTAC3 6ea63211-d49f-4de4-ae5f-78b5aaba5791 084daabf0422daf31fefbafc99e82fa1 {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal"} -C3N-01517.WXS.N.hg38 C3N-01517 GBM WXS blood_normal CPT0167590002 c5532f02-56c1-4f58-8b21-238146948cf5_wxs_gdc_realn.bam 35597663924 BAM harmonized CPTAC3 a6dc9bb3-1335-4444-a152-62265639a7e5 135946503bad72f507ddaf933c0c7f58 {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal"} -C3N-01517.WXS.T C3N-01517 GBM WXS tumor CPT0167530006 CPT0167530006.WholeExome.RP-1303.bam 28507736551 BAM aligned CPTAC3 dedabfd7-8876-4390-95fb-88641d141e20 a358ec31c2359a5aef5ae0237ef275f2 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor"} -C3N-01517.WXS.T.hg38 C3N-01517 GBM WXS tumor CPT0167530006 17b3d2e1-0d12-438c-88ec-a8e7acf2f565_wxs_gdc_realn.bam 38467534108 BAM harmonized CPTAC3 851a0129-33d1-45c6-be4d-dbed07b6b241 2ae4c283315ec4a9997bc93f51415bc5 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor"} -C3N-01518.MethArray.Green.T C3N-01518 GBM Methylation_Array tumor CPT0167640006 203027390081_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1660e1ab-e423-4e08-a1d8-fe7c7e746d90 51962e579eee578243b39da9bebde0c1 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor"} -C3N-01518.MethArray.Red.T C3N-01518 GBM Methylation_Array tumor CPT0167640006 203027390081_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 586815d5-5be7-4f83-b496-eb49410791f5 2c94523bb7757b60481364c0ba48a624 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor"} -C3N-01518.miRNA-Seq.S43_L002_R1.T C3N-01518 GBM miRNA-Seq tumor CPT0167640009 181119_UNC31-K00269_0165_AH27WCBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 264705981 BAM S43_L002_R1 unaligned CPTAC3 4ecbfeb6-6b0c-44ca-b20b-b610620822e1 e522e9a3703173f130c3722b0deddb7b {"aliquot_tag": "ALQ_567181fe", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01518.miRNA-Seq.T.hg38 C3N-01518 GBM miRNA-Seq tumor CPT0167640009 02eb896a-7db9-4cf5-a8f4-b685afe026df_mirnaseq_gdc_realn.bam 310341753 BAM harmonized CPTAC3 3a8bb080-2309-499b-b840-40e33c8c291c 5d7447568d51fe32a68a28b48b605498 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor"} -C3N-01518.RNA-Seq.chimeric.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.chimeric.gdc_realn.bam 35650481 BAM chimeric harmonized CPTAC3 efeb45fd-822c-46ee-8b6e-d31fc7a5c9e9 a858e7e6e479de1a502a84aabf50f8d6 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor"} -C3N-01518.RNA-Seq.genomic.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.genomic.gdc_realn.bam 9338322289 BAM genomic harmonized CPTAC3 6849f874-a34a-44c6-a708-6db2a2ccdc10 e70432537fd99cc32949e9fee9643250 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor"} -C3N-01518.RNA-Seq.S1_L007_R1.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4361775821 FASTQ S1_L007_R1 unaligned CPTAC3 b2aafa3a-4775-467c-80bd-ab1e0fb066cd eddf0e5174a0b270b486da155274fabf {"aliquot_tag": "ALQ_567181fe", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01518.RNA-Seq.S1_L007_R2.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4673953394 FASTQ S1_L007_R2 unaligned CPTAC3 172af382-b92b-46ec-a3a0-e64df197f327 8ab58c38ef873c14e6f727759ac5a092 {"aliquot_tag": "ALQ_567181fe", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01518.RNA-Seq.transcriptome.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.transcriptome.gdc_realn.bam 12097908837 BAM transcriptome harmonized CPTAC3 e9c02a5c-69b3-49ff-80b4-69bda66a24ee 617251201681aa6f4e495eda49e8d534 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor"} -C3N-01518.WGS.N C3N-01518 GBM WGS blood_normal CPT0167700002 CPT0167700002.WholeGenome.RP-1303.bam 61669542373 BAM aligned CPTAC3 37fc6d5e-dd8d-4455-9b59-79bc87e2560c 8083347f1e153802f8d94307c797179c {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal"} -C3N-01518.WGS.N.hg38 C3N-01518 GBM WGS blood_normal CPT0167700002 c5e6f8ca-f7f9-48e5-b8b2-cf81562b323e_wgs_gdc_realn.bam 90499823103 BAM harmonized CPTAC3 94e28d29-60d0-4731-9cc1-a406c71c384d af350601a2fc32639960e4899c101304 {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal"} -C3N-01518.WGS.T C3N-01518 GBM WGS tumor CPT0167640006 CPT0167640006.WholeGenome.RP-1303.bam 64171774463 BAM aligned CPTAC3 cc5bd435-771c-44ce-8d4a-7163ba815452 b4e0dfd2f7dcd9bb4e91458ec26e225e {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor"} -C3N-01518.WGS.T.hg38 C3N-01518 GBM WGS tumor CPT0167640006 9ea35a6a-671b-47cc-95fa-53b5f461bc11_wgs_gdc_realn.bam 93619406656 BAM harmonized CPTAC3 254d09e0-182a-492d-934c-764c730d57a8 8fc067fcfdbf7cad387db774717f1617 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor"} -C3N-01518.WXS.N C3N-01518 GBM WXS blood_normal CPT0167700002 CPT0167700002.WholeExome.RP-1303.bam 21593910203 BAM aligned CPTAC3 6658ac2d-9ec8-4a54-aadc-6710fd4ce32e 1e9b706630cdcaa536fde019dd602560 {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal"} -C3N-01518.WXS.N.hg38 C3N-01518 GBM WXS blood_normal CPT0167700002 c5e6f8ca-f7f9-48e5-b8b2-cf81562b323e_wxs_gdc_realn.bam 29514189741 BAM harmonized CPTAC3 a14a72f0-38d2-47f9-b6e9-2de2ab03808d 7071745b81e06a9c9df2bc6512701015 {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal"} -C3N-01518.WXS.T C3N-01518 GBM WXS tumor CPT0167640006 CPT0167640006.WholeExome.RP-1303.bam 30316298337 BAM aligned CPTAC3 e22e367a-73a6-4d5a-abce-9fd2c6539727 9140d6c77f1c7361a37894472fd55363 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor"} -C3N-01518.WXS.T.hg38 C3N-01518 GBM WXS tumor CPT0167640006 9ea35a6a-671b-47cc-95fa-53b5f461bc11_wxs_gdc_realn.bam 40407919871 BAM harmonized CPTAC3 f945ac5e-9e1a-4d20-af3a-02f9dcee7876 aed886fce6a48ca19fb62e8e6eea2696 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor"} -C3N-01520.MethArray.Green.T C3N-01520 UCEC Methylation_Array tumor CPT0076860009 202178770083_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9682606c-e69c-4633-a518-ef13e4a0c5fd 53fe0efdc2a18825a0ba6c00e34001a8 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor"} -C3N-01520.MethArray.Red.T C3N-01520 UCEC Methylation_Array tumor CPT0076860009 202178770083_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 b2e23e2f-3266-4a75-8554-7a6ac46ae3a3 fe39952467cdf6a5787cb07feae4978e {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.chimeric.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.chimeric.gdc_realn.bam 184458655 BAM chimeric harmonized CPTAC3 ada480d6-97d8-409a-a855-c7df68658f6f bb440c71a36737add4c4150bd668b4b9 {"aliquot_tag": "ALQ_fba2b116", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.chimeric.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.chimeric.gdc_realn.bam 292074538 BAM chimeric harmonized CPTAC3 f1cc4b67-a664-4f57-b530-1bbac3fa04da 5aa3d0ef96c2ccb9406116e4628e31a4 {"aliquot_tag": "ALQ_21da02b0", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.genomic.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.genomic.gdc_realn.bam 9590208993 BAM genomic harmonized CPTAC3 44ae869f-f65d-4b15-a8a3-86a1a5de14df 94fb7b84b5c761ec3f49b13b14a64120 {"aliquot_tag": "ALQ_fba2b116", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.genomic.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.genomic.gdc_realn.bam 15306118143 BAM genomic harmonized CPTAC3 01917716-235a-4a1a-a097-234b8fab513a 30eb7db505d48a31c88007ed2aaa7d00 {"aliquot_tag": "ALQ_21da02b0", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.S2_L007_R1.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R1_001.fastq.gz 4667458627 FASTQ S2_L007_R1 unaligned CPTAC3 a43b1b15-3b59-4e11-b589-8d89b7e63209 0f6a9838cd5fcadd275d825367d43859 {"aliquot_tag": "ALQ_fba2b116", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.S2_L007_R2.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R2_001.fastq.gz 5031406044 FASTQ S2_L007_R2 unaligned CPTAC3 b3135f8c-5c50-41a8-ae39-a427c93a993f fbffd2ca09af7b2afa761033f23feab0 {"aliquot_tag": "ALQ_fba2b116", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.S5_R1.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R1_001.fastq.gz 9890179819 FASTQ S5_R1 unaligned CPTAC3 0c4ae450-999f-451c-a337-9d2065d27a6a 0ee54c836faae4604d06f84e48ebe5f0 {"aliquot_tag": "ALQ_21da02b0", "sample": "S5", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.S5_R2.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R2_001.fastq.gz 10396004046 FASTQ S5_R2 unaligned CPTAC3 e000df0d-00c1-447a-8b75-3d93e441a397 38168e0d3c336a787108e3f59ba993a2 {"aliquot_tag": "ALQ_21da02b0", "sample": "S5", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.transcriptome.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.transcriptome.gdc_realn.bam 12913929121 BAM transcriptome harmonized CPTAC3 ec6e6aa0-213d-465a-bb81-9d9fd1be70f8 c7868484e78a9e51015da44c0e1d0046 {"aliquot_tag": "ALQ_fba2b116", "gdc_sample_type": "Primary Tumor"} -C3N-01520.RNA-Seq.transcriptome.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.transcriptome.gdc_realn.bam 7680379816 BAM transcriptome harmonized CPTAC3 4f88d89e-62ee-41e4-9344-d44972f8c107 0f0e7c71efb664746e177ac92d614a5a {"aliquot_tag": "ALQ_21da02b0", "gdc_sample_type": "Primary Tumor"} -C3N-01520.WGS.N C3N-01520 UCEC WGS blood_normal CPT0076940002 CPT0076940002.WholeGenome.RP-1303.bam 62916695063 BAM aligned CPTAC3 c8b83d9e-42d2-41f4-9a34-2c1bc1a5729c 6764764cb37e5946aa9bb55a8a7b4430 {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-01520.WGS.N.hg38 C3N-01520 UCEC WGS blood_normal CPT0076940002 22d8111e-ed85-442f-a8ff-2bc44792e155_gdc_realn.bam 91255036552 BAM harmonized CPTAC3 021c018b-52e5-4d30-86e0-a0758b6eb859 74348a916501ab87b030bfb6b2f0f6c8 {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-01520.WGS.T C3N-01520 UCEC WGS tumor CPT0076860009 CPT0076860009.WholeGenome.RP-1303.bam 74481411422 BAM aligned CPTAC3 3c9e671b-413c-45e4-a004-0fa9a7cb7032 57bc5ae85472732ea73960c2851fc165 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor"} -C3N-01520.WGS.T.hg38 C3N-01520 UCEC WGS tumor CPT0076860009 7dea6331-0e16-40e5-b908-e9b403f848f6_gdc_realn.bam 114854625364 BAM harmonized CPTAC3 d4f7f077-eadb-471d-8ab2-dcc8035aa087 8de8cd3fa3311e701796a430e3c13078 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor"} -C3N-01520.WXS.N C3N-01520 UCEC WXS blood_normal CPT0076940002 CPT0076940002.WholeExome.RP-1303.bam 34178671220 BAM aligned CPTAC3 c55d1518-f131-4269-88df-57584fe2c37e 0cfa49005e6a7412e62be717a62aa77b {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-01520.WXS.N.hg38 C3N-01520 UCEC WXS blood_normal CPT0076940002 22d8111e-ed85-442f-a8ff-2bc44792e155_gdc_realn.bam 46442780787 BAM harmonized CPTAC3 76483f05-7126-45ca-ada5-39b1d8af487c 9277781a48c6d5276130a6091592f896 {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-01520.WXS.T C3N-01520 UCEC WXS tumor CPT0076860009 CPT0076860009.WholeExome.RP-1303.bam 37684809255 BAM aligned CPTAC3 42f49422-4ff7-43f6-9184-ebd29296debb 7517e95f6e9e563c1690e4305e717343 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor"} -C3N-01520.WXS.T.hg38 C3N-01520 UCEC WXS tumor CPT0076860009 7dea6331-0e16-40e5-b908-e9b403f848f6_gdc_realn.bam 52015710496 BAM harmonized CPTAC3 03c88b74-e1bd-4a90-ac3d-2fbd9bdfaa2b 79a8f741f4ee8d92c79a5926d7c0e12c {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor"} -C3N-01521.MethArray.Green.T C3N-01521 UCEC Methylation_Array tumor CPT0076680009 202176300039_R05C01_Grn.idat 13676225 IDAT Green NA CPTAC3 54bd644d-04a9-47fb-86fd-5b39f9a3070d c1715c2b0f18e92fde93f43f505b073d {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor"} -C3N-01521.MethArray.Red.T C3N-01521 UCEC Methylation_Array tumor CPT0076680009 202176300039_R05C01_Red.idat 13676225 IDAT Red NA CPTAC3 c1798bb1-0311-43f1-99ba-eaba1b42f2d5 2d378953341dda567a4c99b10b8091b9 {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor"} -C3N-01521.miRNA-Seq.S5_L008_R1.T C3N-01521 UCEC miRNA-Seq tumor CPT0076680006 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L008_R1_001.unaln.bam 240573660 BAM S5_L008_R1 unaligned CPTAC3 35ba21c9-eba6-4f3f-b514-49d4cc3d6f61 6dc8b3df2caa2b548f8d4d2ea30faa96 {"aliquot_tag": "ALQ_7e986e07", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01521.miRNA-Seq.T.hg38 C3N-01521 UCEC miRNA-Seq tumor CPT0076680006 c97d99fc-8005-48b7-a015-d566fbcf939f_mirnaseq_gdc_realn.bam 265964577 BAM harmonized CPTAC3 b4f25abb-063b-4685-8206-ccdbc0ece742 0f72bf45ce9e6f210823a6a6ac5fae92 {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.chimeric.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.chimeric.gdc_realn.bam 231388191 BAM chimeric harmonized CPTAC3 094589cc-5fdb-459d-880b-5a00af568045 283dfe5374785aaec720e239544f0223 {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.chimeric.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.chimeric.gdc_realn.bam 161032463 BAM chimeric harmonized CPTAC3 368ddef6-d51c-487f-be0c-c78173f2339b 03b3d3239218b81c94cc670c736d438d {"aliquot_tag": "ALQ_611030a0", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.genomic.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.genomic.gdc_realn.bam 7904311139 BAM genomic harmonized CPTAC3 854f3c1d-3b0e-43af-9472-e94319f50c9f e3eb7d7fef004d533bc9687d50743628 {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.genomic.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.genomic.gdc_realn.bam 9574238401 BAM genomic harmonized CPTAC3 abe02a64-d0ad-4dc2-9ded-92d357ea8624 0641b895b1cad5bbb344b7f0fc1649fb {"aliquot_tag": "ALQ_611030a0", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.S3_L007_R1.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3628451536 FASTQ S3_L007_R1 unaligned CPTAC3 0acc093f-71f7-4f80-a9b2-20e017cbd7e4 a158fcdf9c88b27c7bf0a1e9a9ef04d1 {"aliquot_tag": "ALQ_7e986e07", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.S3_L007_R2.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 3870291857 FASTQ S3_L007_R2 unaligned CPTAC3 1b05444d-acbf-4aa3-9981-0803c58db907 741c08c4ef72952697d604b7dfd10be5 {"aliquot_tag": "ALQ_7e986e07", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.S59_R1.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R1_001.fastq.gz 5998969341 FASTQ S59_R1 unaligned CPTAC3 b4a80f50-0c06-48b6-a02c-e06b9b734727 561cc6955be33d38e3eafd32521352f3 {"aliquot_tag": "ALQ_611030a0", "sample": "S59", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.S59_R2.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R2_001.fastq.gz 6190702443 FASTQ S59_R2 unaligned CPTAC3 f4046dfe-3bda-45d4-abb3-d4586b5e3802 d3dd17578eb9d91f3b29d29be4abd64c {"aliquot_tag": "ALQ_611030a0", "sample": "S59", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.transcriptome.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.transcriptome.gdc_realn.bam 10934712720 BAM transcriptome harmonized CPTAC3 1a92c401-5acd-4512-8fa6-830d60383923 e491aa27629cb848a9a0d52ca6e237fa {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor"} -C3N-01521.RNA-Seq.transcriptome.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.transcriptome.gdc_realn.bam 6108001345 BAM transcriptome harmonized CPTAC3 9f8759de-ae71-4902-bdd3-0a5c4721ddc5 a36032e1608e5abfe11aa87620194649 {"aliquot_tag": "ALQ_611030a0", "gdc_sample_type": "Primary Tumor"} -C3N-01521.WGS.N C3N-01521 UCEC WGS blood_normal CPT0076760002 CPT0076760002.WholeGenome.RP-1303.bam 63986772932 BAM aligned CPTAC3 8117a468-0975-4be1-a19a-4f962c4e55f3 802aa52b371cab4c8413bc6d74b456b6 {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal"} -C3N-01521.WGS.N.hg38 C3N-01521 UCEC WGS blood_normal CPT0076760002 ac16a9c0-e9f4-4bdf-ba76-78d9438f0b10_gdc_realn.bam 93588727144 BAM harmonized CPTAC3 de536564-ee0b-471a-a157-203f5b67fb71 5fe746ea0808a1b78d98fa9e58fad434 {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal"} -C3N-01521.WGS.T C3N-01521 UCEC WGS tumor CPT0076680009 CPT0076680009.WholeGenome.RP-1303.bam 64693443226 BAM aligned CPTAC3 6fd00a5f-6e62-483f-920a-9ec4bbafe9f6 3e6689db72b9ee2bb5c89e8e3471921c {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor"} -C3N-01521.WGS.T.hg38 C3N-01521 UCEC WGS tumor CPT0076680009 ff6a7b50-074e-4229-a5b1-282d7e4c9208_gdc_realn.bam 97904942254 BAM harmonized CPTAC3 2c1c0ba9-0049-4e08-adbd-173e7d68433d e7f57605bf56bd0b1d49273783c7ee5d {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor"} -C3N-01521.WXS.N C3N-01521 UCEC WXS blood_normal CPT0076760002 CPT0076760002.WholeExome.RP-1303.bam 28125822236 BAM aligned CPTAC3 680b963a-9f31-450b-b00d-14ecf777079d 4c5b465fcdb5111c2b2e2597074fb70f {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal"} -C3N-01521.WXS.N.hg38 C3N-01521 UCEC WXS blood_normal CPT0076760002 ac16a9c0-e9f4-4bdf-ba76-78d9438f0b10_gdc_realn.bam 38183487649 BAM harmonized CPTAC3 c670d6d3-0ad3-481c-9336-20d351ffc7dc a5e2a795f5ac31d6b6af86c946af4d67 {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal"} -C3N-01521.WXS.T C3N-01521 UCEC WXS tumor CPT0076680009 CPT0076680009.WholeExome.RP-1303.bam 24178811389 BAM aligned CPTAC3 2337201b-200c-4135-ab99-f982407546ee 7d09f1c87ecbdf705d7c5a7488eeb418 {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor"} -C3N-01521.WXS.T.hg38 C3N-01521 UCEC WXS tumor CPT0076680009 ff6a7b50-074e-4229-a5b1-282d7e4c9208_gdc_realn.bam 33265636097 BAM harmonized CPTAC3 1c684370-d3c3-4bf9-82df-6cd1a2b107e2 ea6064e5174c96977678e3924852fefe {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_1fe5503b.MethArray.Green.T C3N-01522 CCRCC Methylation_Array tumor CPT0077120009 204372030085_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8d1029d1-f05e-46c0-94ac-b0ad150bd8b0 06d52e876412802fb89c2b46bfbb8b58 {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_1fe5503b.MethArray.Red.T C3N-01522 CCRCC Methylation_Array tumor CPT0077120009 204372030085_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 5167377c-2ea7-4631-9fd0-c908a306d45c f9c92003acac758104b8d3c84914e09c {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_1fe5503b.WGS.T C3N-01522 CCRCC WGS tumor CPT0077120009 CPT0077120009.WholeGenome.RP-2158.bam 23337018319 BAM aligned CPTAC3 0bac1c9f-749a-404d-889e-be28292767c6 9414211fe5dee96bce068ef6cd4f6039 {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_1fe5503b.WGS.T.hg38 C3N-01522 CCRCC WGS tumor CPT0077120009 f6fea3d8-c415-4e0d-a215-91be2d9a458a_wgs_gdc_realn.bam 69246786108 BAM harmonized CPTAC3 b1f22370-f3c9-4831-a00f-9d437722149d 364fae6dc82ee1b7beca29748d339c1a {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_1fe5503b.WXS.T C3N-01522 CCRCC WXS tumor CPT0077120009 CPT0077120009.WholeExome.RP-1303.bam 18984065266 BAM aligned CPTAC3 d462bdc3-8afe-441d-b985-1c50c162571b b6e4b18faf8a6aae0f682620fedd4bcf {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_1fe5503b.WXS.T.hg38 C3N-01522 CCRCC WXS tumor CPT0077120009 f6fea3d8-c415-4e0d-a215-91be2d9a458a_wxs_gdc_realn.bam 25850689708 BAM harmonized CPTAC3 a9ff1801-fb91-42cf-a890-c7fe7ff2755c 667acd3ce039e261d56b666157dca2ab {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_2285798b.MethArray.Green.T C3N-01522 CCRCC Methylation_Array tumor CPT0077130009 204372030011_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 9fdbbae6-8f71-40e8-8b9d-3681affacbc7 6c951ff3fcdd878fdc0e0d1665b1dd44 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_2285798b.MethArray.Red.T C3N-01522 CCRCC Methylation_Array tumor CPT0077130009 204372030011_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 1e891c17-304a-496e-a384-f9d036b5ab05 8dd4fb81a0ced9423b693a3c0001f812 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_2285798b.WGS.T C3N-01522 CCRCC WGS tumor CPT0077130009 CPT0077130009.WholeGenome.RP-2158.bam 28627966134 BAM aligned CPTAC3 d830215c-127b-464a-99a5-2e14c74aa7fe 5f0923d8d8c0190bec39d82f368e7924 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_2285798b.WGS.T.hg38 C3N-01522 CCRCC WGS tumor CPT0077130009 3e70ad98-e034-4c2e-9796-fb3536c6e86a_wgs_gdc_realn.bam 81827325198 BAM harmonized CPTAC3 ea782d56-f93e-440c-9acb-67f6de0d71b9 d55e95904aab8fcc556c3edbd55da6af {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_2285798b.WXS.T C3N-01522 CCRCC WXS tumor CPT0077130009 CPT0077130009.WholeExome.RP-1303.bam 19959736594 BAM aligned CPTAC3 e0f1306e-82c3-45c9-a59a-8dacdbd0797e 0b319d81dc8fa7866d7b91dc90e39598 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_2285798b.WXS.T.hg38 C3N-01522 CCRCC WXS tumor CPT0077130009 3e70ad98-e034-4c2e-9796-fb3536c6e86a_wxs_gdc_realn.bam 28179248185 BAM harmonized CPTAC3 2c3543ba-ca5d-43d0-89fd-325cd6379c9f 157f7f5e18c8c19d44917b676867b9dd {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_8f5a4daa.miRNA-Seq.S21_L004_R1.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077120006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L004_R1_001.unaln.bam 353133256 BAM S21_L004_R1 unaligned CPTAC3 6bfbb836-949f-4354-b723-dbdfea4fd255 f2fccb3ddb01d17c766085046a8253ce {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_8f5a4daa.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077120006 6725a6d9-6ef7-422b-a3c7-6b0951d5d246_mirnaseq_gdc_realn.bam 384573377 BAM harmonized CPTAC3 6feb38b3-5a4c-4352-b981-47e61ba7b39c 413f18d5faed76023cbdf9f45220d64c {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_8f5a4daa.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.chimeric.gdc_realn.bam 224714554 BAM chimeric harmonized CPTAC3 66fc3b48-89cc-4ab9-a247-3fb69a1abb9f 56a3ec46351240bb85585239585e9e87 {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_8f5a4daa.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.genomic.gdc_realn.bam 9057133159 BAM genomic harmonized CPTAC3 68a9a9d7-a41d-4f42-b20b-6bf058b9628b 0c7db716431580a97818927060183005 {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_8f5a4daa.RNA-Seq.S5_L002_R1.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4358892188 FASTQ S5_L002_R1 unaligned CPTAC3 f077a03a-268f-45d7-9010-417fe026a87b 4d1dd4ded0521164cf679200ba356b10 {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_8f5a4daa.RNA-Seq.S5_L002_R2.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4905885878 FASTQ S5_L002_R2 unaligned CPTAC3 c2771b42-ead4-4fa2-8070-33bae5712e94 e18f2808cde806b6e32fbbee4648d61d {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_8f5a4daa.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.transcriptome.gdc_realn.bam 12153260606 BAM transcriptome harmonized CPTAC3 f279c190-505d-4bfd-a1b0-446aca448fcc b4f653e46f2fc359bc5815d681196a8e {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_b23a641a.miRNA-Seq.S2_L004_R1.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077130006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L004_R1_001.unaln.bam 331444243 BAM S2_L004_R1 unaligned CPTAC3 035f9d77-c7f9-494a-8666-6c1a9d644dbc 91167a486a0231b4132bae04f155346a {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_b23a641a.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077130006 f888c0ee-7aca-4e9d-838a-d8ebc7eef5cb_mirnaseq_gdc_realn.bam 360554761 BAM harmonized CPTAC3 6afcc2b2-7ae7-429e-ac17-8d8ce9a3b0e3 77ec184374f5984909b52cfbd71e9044 {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_b23a641a.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.chimeric.gdc_realn.bam 151682204 BAM chimeric harmonized CPTAC3 ece63487-d7e9-4d83-9cb6-9d7bb70c28a2 45103d4fbc4259a1bfd3370c9f004efa {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_b23a641a.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.genomic.gdc_realn.bam 7612857625 BAM genomic harmonized CPTAC3 164eefe0-ea79-43c0-aae4-df4037a103b3 8ed35f8c09bfe62a676e343903606a2e {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_b23a641a.RNA-Seq.S6_L002_R1.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R1_001.fastq.gz 3718770514 FASTQ S6_L002_R1 unaligned CPTAC3 408e63b6-0791-4337-bdb3-7287703499da 6bdd48cf9ac94bd0936929dc858ef367 {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_b23a641a.RNA-Seq.S6_L002_R2.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R2_001.fastq.gz 4224799005 FASTQ S6_L002_R2 unaligned CPTAC3 2fd64739-e004-49a1-989a-b8524889d712 066e22d27426978c88fdc628e057fa03 {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01522.DUP_b23a641a.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.transcriptome.gdc_realn.bam 9372587238 BAM transcriptome harmonized CPTAC3 24dda277-269e-45d9-86f9-d4d4bab235d6 08d5a2cfb15c2501c10aa51e67fca0be {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01522.MethArray.Green.A C3N-01522 CCRCC Methylation_Array tissue_normal CPT0077140009 204930640061_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 d0f98827-4f34-4b18-8efd-d49a5857f486 c8e22a116ecd24b8e7bb74b7837da44b {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.MethArray.Green.T C3N-01522 CCRCC Methylation_Array tumor CPT0077110009 202178770143_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 a8c16193-0217-4f9e-ae09-6c7c6dcbd51f af8d2b334dc67930cc41873696f9961f {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor"} -C3N-01522.MethArray.Red.A C3N-01522 CCRCC Methylation_Array tissue_normal CPT0077140009 204930640061_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 59b1c268-198c-4dd8-8517-399d287ef804 a8ab0f18d1ba93c8f0d60a19290aa1bf {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.MethArray.Red.T C3N-01522 CCRCC Methylation_Array tumor CPT0077110009 202178770143_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 d5083d8f-6cad-48e9-86a0-6a8127558d7a 2d2fcc04d3d11de38f35ee30997c57cc {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor"} -C3N-01522.miRNA-Seq.A.hg38 C3N-01522 CCRCC miRNA-Seq tissue_normal CPT0077140006 6bf0111d-3285-4ee7-a948-72ddfec8b7ad_mirnaseq_gdc_realn.bam 196895788 BAM harmonized CPTAC3 94d8757f-32f4-4567-bef8-fa0ac8291dda f9826f8ad4da425b5226d75d42d4f6d9 {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.miRNA-Seq.S18_L003_R1.A C3N-01522 CCRCC miRNA-Seq tissue_normal CPT0077140006 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 175907803 BAM S18_L003_R1 unaligned CPTAC3 410c5ba7-cffa-47e2-875a-cd4ecc6bcd26 b6c26cb10e1a4ad1f02cc72b44b373ac {"aliquot_tag": "ALQ_1ab80a", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.miRNA-Seq.S7_L008_R1.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077110006 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L008_R1_001.unaln.bam 256370556 BAM S7_L008_R1 unaligned CPTAC3 c806271f-a03b-4a34-a792-70fc1508033f d89b5db2805f4ee2befe481d103b174b {"aliquot_tag": "ALQ_c8fa377a", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01522.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077110006 e2da7550-76d7-497c-b6ca-e6966d7a6340_mirnaseq_gdc_realn.bam 281655089 BAM harmonized CPTAC3 1dbab311-7f20-4c09-8bdd-3c2c7e853cb8 e8b9e7d5817c2560e988e9d84d977a69 {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor"} -C3N-01522.RNA-Seq.chimeric.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.chimeric.gdc_realn.bam 70651261 BAM chimeric harmonized CPTAC3 a3d11894-20a8-4996-81db-b00b1477a834 3d2ece7a83259a5a6209ae4379b6c7cd {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.chimeric.gdc_realn.bam 212911222 BAM chimeric harmonized CPTAC3 3b6e189f-a4ee-4fab-9455-61c4c11f2058 33f591d237f6eed74122815e27744625 {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor"} -C3N-01522.RNA-Seq.genomic.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.genomic.gdc_realn.bam 8447572020 BAM genomic harmonized CPTAC3 ec0aae63-d002-4934-82e5-e1eb8b3d4816 94024af76f86eb03e30142334e9c12c0 {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.genomic.gdc_realn.bam 6873011211 BAM genomic harmonized CPTAC3 561a3b0a-51d2-4d8d-a9d0-18760ffc19ff 5fa220c4b0101729b0464e96c57452ea {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor"} -C3N-01522.RNA-Seq.S16_L004_R1.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R1_001.fastq.gz 4323260349 FASTQ S16_L004_R1 unaligned CPTAC3 c5bcda2b-0deb-4201-8a2e-a084eb4e7913 82d87a254733a01ab8a69c9a1e708058 {"aliquot_tag": "ALQ_1ab80a", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.RNA-Seq.S16_L004_R2.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R2_001.fastq.gz 4165359528 FASTQ S16_L004_R2 unaligned CPTAC3 9e46539f-5d80-471e-9d57-2ef355a2c155 1a73b1c0ec657b388739963c3e7876e7 {"aliquot_tag": "ALQ_1ab80a", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.RNA-Seq.S1_L007_R1.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R1_001.fastq.gz 3487797290 FASTQ S1_L007_R1 unaligned CPTAC3 2627ae9b-1a95-4fff-9221-647706199549 6bd632aad639bb5ea4da5d8a08455aec {"aliquot_tag": "ALQ_c8fa377a", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01522.RNA-Seq.S1_L007_R2.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R2_001.fastq.gz 3799127488 FASTQ S1_L007_R2 unaligned CPTAC3 ba7d5cb5-d91f-4501-a9d4-f0edf2a247d4 c787abc84f2a73be07b92709bf7660f5 {"aliquot_tag": "ALQ_c8fa377a", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01522.RNA-Seq.transcriptome.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.transcriptome.gdc_realn.bam 9892666763 BAM transcriptome harmonized CPTAC3 b539a9ea-5918-4352-8e00-72323931517b 33bb4b6d117950d78830d69aa305fd40 {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.transcriptome.gdc_realn.bam 9952414582 BAM transcriptome harmonized CPTAC3 55a0106a-0c91-4705-8749-ad8f7aebef9c 0802e845769688aa565a21c0c24af3f3 {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor"} -C3N-01522.WGS.A C3N-01522 CCRCC WGS tissue_normal CPT0077140009 CPT0077140009.WholeGenome.RP-1303.bam 63343250805 BAM aligned CPTAC3 7864507e-0e85-436d-99af-c1a793a08449 c6f4cc86983267b6e3b7c96a175ac837 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.WGS.A.hg38 C3N-01522 CCRCC WGS tissue_normal CPT0077140009 63ac8e39-5100-4040-8cf7-09f9d888c895_wgs_gdc_realn.bam 92338829951 BAM harmonized CPTAC3 7e9500a6-3b7c-4403-9c7a-ffe551ae0b54 1f84410fb18545ba234e89bee9bd8217 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.WGS.N C3N-01522 CCRCC WGS blood_normal CPT0077230002 CPT0077230002.WholeGenome.RP-1303.bam 75459270597 BAM aligned CPTAC3 7b338c08-40fd-4022-b035-c227ebe56d5d 56ecea1135e410a13c7c938f8cfcd6a2 {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-01522.WGS.N.hg38 C3N-01522 CCRCC WGS blood_normal CPT0077230002 54d1fe86-bb61-483d-a650-a13697f5e4b5_gdc_realn.bam 113123467536 BAM harmonized CPTAC3 b535c809-a139-4e3c-9cb9-ce2e83619efe 20a62c1282af0d06454b89ecf8ce5df4 {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-01522.WGS.T C3N-01522 CCRCC WGS tumor CPT0077110009 CPT0077110009.WholeGenome.RP-1303.bam 70512189718 BAM aligned CPTAC3 65eba645-4d66-4dd0-a947-2b295037b321 195495731d5006267178f074d014e913 {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor"} -C3N-01522.WGS.T.hg38 C3N-01522 CCRCC WGS tumor CPT0077110009 c4027887-51e8-40b2-956a-ba6daf3ee157_gdc_realn.bam 106403631816 BAM harmonized CPTAC3 f6c3b4fb-9203-4cda-baa5-a41b647a14fc 002d6665d0beabf2e172bf50cd1d8522 {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor"} -C3N-01522.WXS.A C3N-01522 CCRCC WXS tissue_normal CPT0077140009 CPT0077140009.WholeExome.RP-1303.bam 29595659566 BAM aligned CPTAC3 2741386b-721f-4545-9ff8-5347475d5647 d13aa0ec3d4a9d4af792e305768820f0 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.WXS.A.hg38 C3N-01522 CCRCC WXS tissue_normal CPT0077140009 63ac8e39-5100-4040-8cf7-09f9d888c895_wxs_gdc_realn.bam 39618505461 BAM harmonized CPTAC3 a12b7054-a01c-4760-b743-5c0fa2148fc1 24d855a97099897cdf2e706d2a69c8b0 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01522.WXS.N C3N-01522 CCRCC WXS blood_normal CPT0077230002 CPT0077230002.WholeExome.RP-1303.bam 33107189954 BAM aligned CPTAC3 006db4eb-2028-4cba-b40f-a2da9e7831fd 64b06f1d0c313577208cd5898a55101d {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-01522.WXS.N.hg38 C3N-01522 CCRCC WXS blood_normal CPT0077230002 54d1fe86-bb61-483d-a650-a13697f5e4b5_gdc_realn.bam 45116067067 BAM harmonized CPTAC3 2cfcc93b-fea4-4e4a-8ac9-e6f0202c05f7 75a29400da74144fb141f951e0caa733 {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-01522.WXS.T C3N-01522 CCRCC WXS tumor CPT0077110009 CPT0077110009.WholeExome.RP-1303.bam 32767727766 BAM aligned CPTAC3 1a93802e-a63e-40d8-985f-5a5d33ccaeee 2098f01f2e22b9ec68f43d07ca92e68e {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor"} -C3N-01522.WXS.T.hg38 C3N-01522 CCRCC WXS tumor CPT0077110009 c4027887-51e8-40b2-956a-ba6daf3ee157_gdc_realn.bam 44643903219 BAM harmonized CPTAC3 c5bffbd5-ed94-4032-ae1b-e15439ccb39f 6d98bce6d0d1e9cad0732cec826ef27e {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_28eda250.MethArray.Green.T C3N-01524 CCRCC Methylation_Array tumor CPT0077300009 204367470157_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 333cf649-8535-4381-964b-a81298f7ed69 d9d84b98733872e1b4492028e3ec3e6e {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_28eda250.MethArray.Red.T C3N-01524 CCRCC Methylation_Array tumor CPT0077300009 204367470157_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 b76c3c1c-7a7f-4eff-b01e-81e1c43cdece 7bffc087b06fbdfa26ba2208394cbd9a {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_28eda250.WGS.T C3N-01524 CCRCC WGS tumor CPT0077300009 CPT0077300009.WholeGenome.RP-2158.bam 24101920492 BAM aligned CPTAC3 48f12d39-cbcf-49f6-acca-d5ec461df205 45b55980f1857c31591e9effb4cd0fef {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_28eda250.WGS.T.hg38 C3N-01524 CCRCC WGS tumor CPT0077300009 90b3bf66-2c83-415d-a71e-4ad8ac816413_wgs_gdc_realn.bam 69600506137 BAM harmonized CPTAC3 545f0cfe-8871-4ae1-ab42-8e20afaf41a4 08ceb25f262d56d5f7a0c1efdc014b3f {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_28eda250.WXS.T C3N-01524 CCRCC WXS tumor CPT0077300009 CPT0077300009.WholeExome.RP-1303.bam 16784953218 BAM aligned CPTAC3 6b0c2efa-8974-403d-8edb-fcc5801a1c22 d3b67e7a41aebbf9d3cf62527bf10071 {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_28eda250.WXS.T.hg38 C3N-01524 CCRCC WXS tumor CPT0077300009 90b3bf66-2c83-415d-a71e-4ad8ac816413_wxs_gdc_realn.bam 23237673725 BAM harmonized CPTAC3 d814d404-b80b-4fa5-9417-046b9095278e c10993beb73aeb75687b7aba46d3c2b4 {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_7e1e0e15.miRNA-Seq.S23_L004_R1.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077290006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAAAAG_S23_L004_R1_001.unaln.bam 273890281 BAM S23_L004_R1 unaligned CPTAC3 fbd2e238-c5f9-4a25-8d3e-9e53b15547c3 037ca1c2b36f884fee880578e73b745d {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_7e1e0e15.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077290006 53e567f4-aaba-4360-8829-4f5229503467_mirnaseq_gdc_realn.bam 300270570 BAM harmonized CPTAC3 9fb6afe4-62c5-49bc-9c87-48945b70b154 6e6c5e23f49a79d1b3bba01f584dc9e8 {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_7e1e0e15.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.chimeric.gdc_realn.bam 225547309 BAM chimeric harmonized CPTAC3 515e1d44-42d7-47f1-b2db-6d1df0fbd5e4 8a32794a9e32e3d012e2dd9854ee77de {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_7e1e0e15.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.genomic.gdc_realn.bam 8497552412 BAM genomic harmonized CPTAC3 3ee3d63c-b529-4bce-99be-160f97a96456 6c4b7cd2a0e3b55995dbdab4b00314ec {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_7e1e0e15.RNA-Seq.S8_L002_R1.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3969477324 FASTQ S8_L002_R1 unaligned CPTAC3 4af6c8b6-f787-4d0c-99b0-6c968c820180 8577fff723b956ba2c702af4838e1778 {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_7e1e0e15.RNA-Seq.S8_L002_R2.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4665222178 FASTQ S8_L002_R2 unaligned CPTAC3 8d356193-a566-4fd9-a190-3b120c552740 875104c886500785331e74b77978c558 {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_7e1e0e15.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.transcriptome.gdc_realn.bam 10745384683 BAM transcriptome harmonized CPTAC3 3ad040ae-c315-4f44-bfc3-827c334533f2 889b860e8dd1f784ab310260c736c3ed {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_b852bfc1.miRNA-Seq.S24_L004_R1.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077300006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L004_R1_001.unaln.bam 352090110 BAM S24_L004_R1 unaligned CPTAC3 dda69548-003e-4580-9310-d11e6314de6e 5e4305397458e6decfc27331aa4fb397 {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_b852bfc1.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077300006 37f79464-7dea-4477-a95c-4d7f553dd9bb_mirnaseq_gdc_realn.bam 382376913 BAM harmonized CPTAC3 75afac11-397e-4198-a68c-96c55e6c7e6c b238e3867cd1fb940feb8aca9d202c4d {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_b852bfc1.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.chimeric.gdc_realn.bam 229457088 BAM chimeric harmonized CPTAC3 ac391e7b-26f5-40c8-84e9-5e944ed0e456 5424de51280c26dc38c88bf998cdf2ee {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_b852bfc1.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.genomic.gdc_realn.bam 8182461616 BAM genomic harmonized CPTAC3 ede4380c-70c9-4e68-b3e5-ed9154f76cc7 c33632568542632549d2216566a5fdde {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_b852bfc1.RNA-Seq.S10_L003_R1.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R1_001.fastq.gz 3834752470 FASTQ S10_L003_R1 unaligned CPTAC3 8af7e4df-ca69-471b-a47f-2d6a3a9a5489 553f5703acec35716a91e70af5d2af38 {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_b852bfc1.RNA-Seq.S10_L003_R2.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R2_001.fastq.gz 4532509428 FASTQ S10_L003_R2 unaligned CPTAC3 8a444662-4d13-445e-9499-f11dbae935da 0ca134e1878eb900adc5b861323fdd0d {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_b852bfc1.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.transcriptome.gdc_realn.bam 10034806326 BAM transcriptome harmonized CPTAC3 0e9ea75b-a7d0-48fe-8d9b-773e5a933517 c8210795c75e49485f9806d31f081b24 {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_eea11384.MethArray.Green.T C3N-01524 CCRCC Methylation_Array tumor CPT0077290009 204367490048_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2c45f520-b5f7-4cbd-9e95-a99a7861d947 ee20413350470b4a22e5f61a3b4c2b34 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_eea11384.MethArray.Red.T C3N-01524 CCRCC Methylation_Array tumor CPT0077290009 204367490048_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 2f4dcc6c-c9cb-4452-b793-4901db2f867a f7af3a8921594fed9ddd711db8161f00 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_eea11384.WGS.T C3N-01524 CCRCC WGS tumor CPT0077290009 CPT0077290009.WholeGenome.RP-2158.bam 21320097856 BAM aligned CPTAC3 15ae9024-ec9c-4541-8964-ea17c38f34a8 98ce3e6bc30ba647b4abe43a10e5e0a3 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_eea11384.WGS.T.hg38 C3N-01524 CCRCC WGS tumor CPT0077290009 5d74c4a0-a436-4a24-958e-ad94a253a4bb_wgs_gdc_realn.bam 62652575893 BAM harmonized CPTAC3 76475195-2c2a-40cc-aac1-f08eac32df89 0886cb46586edc25530ad9bb0d4b535c {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_eea11384.WXS.T C3N-01524 CCRCC WXS tumor CPT0077290009 CPT0077290009.WholeExome.RP-1303.bam 18926128026 BAM aligned CPTAC3 46692914-36a7-42e4-be2d-f63229671819 d187d70802faa45bcf785ed3d051cbb8 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.DUP_eea11384.WXS.T.hg38 C3N-01524 CCRCC WXS tumor CPT0077290009 5d74c4a0-a436-4a24-958e-ad94a253a4bb_wxs_gdc_realn.bam 26233680064 BAM harmonized CPTAC3 bdd20b6a-b26a-492c-9e01-3eb5821be198 c9907ebec6b1d18deff0d992bbef2d83 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor"} -C3N-01524.MethArray.Green.A C3N-01524 CCRCC Methylation_Array tissue_normal CPT0077320009 204930640120_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cbe081bf-9453-429b-92fc-2e3d091937f2 4b431d8e7ed7b9e49886199901d3689a {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.MethArray.Green.T C3N-01524 CCRCC Methylation_Array tumor CPT0077310009 202178770008_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0528194a-e0c1-4d0f-86a5-ad77173dc2a1 6c8ac35343d33a2793e0c598a56ece25 {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor"} -C3N-01524.MethArray.Red.A C3N-01524 CCRCC Methylation_Array tissue_normal CPT0077320009 204930640120_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 ae4f43c3-e1ac-45fa-aa6e-93d8cd825b06 fd763f70b73780bb1da859a86e441d5f {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.MethArray.Red.T C3N-01524 CCRCC Methylation_Array tumor CPT0077310009 202178770008_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 08946f85-77d8-47da-827e-bcf65f59a67f ca7bfe042ba61db2785e77f0eb652fbe {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor"} -C3N-01524.miRNA-Seq.A.hg38 C3N-01524 CCRCC miRNA-Seq tissue_normal CPT0077320006 aa27768c-f975-4cd1-b271-4a9bab982e3e_mirnaseq_gdc_realn.bam 225032902 BAM harmonized CPTAC3 83a6d1c3-ea36-477d-8ad4-78a7281f03cd 9219c5132759555e95dcaeda10069ac6 {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.miRNA-Seq.S19_L003_R1.A C3N-01524 CCRCC miRNA-Seq tissue_normal CPT0077320006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 201410246 BAM S19_L003_R1 unaligned CPTAC3 9768e29b-6352-4f23-bf23-131546c4247b 754df03d19312763632b94b416a801b1 {"aliquot_tag": "ALQ_c292eca1", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.miRNA-Seq.S44_L002_R1.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077310006 181113_UNC31-K00269_0164_AH23NNBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 251002653 BAM S44_L002_R1 unaligned CPTAC3 7ab139b6-8554-439d-8737-440ae68417a9 f24167cac71d6a4f58a819e09f48d190 {"aliquot_tag": "ALQ_85329671", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01524.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077310006 4ee095a5-09ab-4479-82b4-e5195ddb484b_mirnaseq_gdc_realn.bam 271406534 BAM harmonized CPTAC3 b36df476-04ad-4d25-a971-b560d668a830 facd033bb08048a363458250964aa4b4 {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor"} -C3N-01524.RNA-Seq.chimeric.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.chimeric.gdc_realn.bam 87438298 BAM chimeric harmonized CPTAC3 d2d5c2c1-cf9e-468f-8639-3fa5e8e54a26 c6e6389f2549a5890b6742083bdb3bb1 {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.chimeric.gdc_realn.bam 154798513 BAM chimeric harmonized CPTAC3 e0f2dab2-3f82-46bd-8370-4b52e4502619 68b8584996b2a7741a257dcb66169f92 {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor"} -C3N-01524.RNA-Seq.genomic.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.genomic.gdc_realn.bam 7508743373 BAM genomic harmonized CPTAC3 be397fe8-24ef-4c88-996d-619315b424da 29da033281f04856ca62bf4501ddd73d {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.genomic.gdc_realn.bam 7691435230 BAM genomic harmonized CPTAC3 44d5e831-3d26-472c-a5e3-fd6fd15461bd 179c40772565cae2fbb091c9edd8ef99 {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor"} -C3N-01524.RNA-Seq.S4_L007_R1.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R1_001.fastq.gz 3725590065 FASTQ S4_L007_R1 unaligned CPTAC3 5a150b59-3d3c-4be6-9c89-f8067a652e60 8ec17f8bfba6ee864acfe8d00fe51b25 {"aliquot_tag": "ALQ_85329671", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01524.RNA-Seq.S4_L007_R2.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R2_001.fastq.gz 4045324111 FASTQ S4_L007_R2 unaligned CPTAC3 e12775ce-0aac-444a-8f8f-83eea65b1ce5 39c898bdf495b982d2d9da907feeeab9 {"aliquot_tag": "ALQ_85329671", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01524.RNA-Seq.S5_L002_R1.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R1_001.fastq.gz 3655993717 FASTQ S5_L002_R1 unaligned CPTAC3 fa8f236e-200e-46e4-8007-936910f8863a 705fc161d5a09d1a8060276190cb9ec9 {"aliquot_tag": "ALQ_c292eca1", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.RNA-Seq.S5_L002_R2.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R2_001.fastq.gz 4048304952 FASTQ S5_L002_R2 unaligned CPTAC3 77f448c3-5a83-4fea-95c9-8c999c378f49 1ecbc8ab6ca6487ac833b5fabb94d447 {"aliquot_tag": "ALQ_c292eca1", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.RNA-Seq.transcriptome.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.transcriptome.gdc_realn.bam 8223916750 BAM transcriptome harmonized CPTAC3 4392e372-3aff-4c7b-9c52-86163dd904b4 4e51275439ee0354e6ddfe6bc60ccb03 {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.transcriptome.gdc_realn.bam 10600808893 BAM transcriptome harmonized CPTAC3 50316fff-1696-43f8-a9a8-d36b7c9aaec7 a23949d1c7f5e3a1b0d6a8077d8764cb {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor"} -C3N-01524.WGS.A C3N-01524 CCRCC WGS tissue_normal CPT0077320009 CPT0077320009.WholeGenome.RP-1303.bam 64244058141 BAM aligned CPTAC3 506c0a87-df32-498b-923b-6cff4399e114 e96e847d75c9a8995cbbf9ac057f059c {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.WGS.A.hg38 C3N-01524 CCRCC WGS tissue_normal CPT0077320009 5e4c455f-4a8c-4065-b845-df6d85a8df55_wgs_gdc_realn.bam 94290971310 BAM harmonized CPTAC3 53e5c523-da96-47c7-a625-dc65b7ab51a0 5e6d441f7e8b26a8de489179a75d1a4f {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.WGS.N C3N-01524 CCRCC WGS blood_normal CPT0077410002 CPT0077410002.WholeGenome.RP-1303.bam 62871277233 BAM aligned CPTAC3 dc7775fe-9e24-4b58-af4e-4cbddde8dc3e 075999ca436b1a386f1a17fdee4015ac {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01524.WGS.N.hg38 C3N-01524 CCRCC WGS blood_normal CPT0077410002 492c07b1-0c0c-4b13-b2d2-db8a6694d819_gdc_realn.bam 94923448976 BAM harmonized CPTAC3 a6fcae21-45ae-43f6-a546-026ebcfbb1fe c698fd6e7aa290932b48c0c8120021c5 {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01524.WGS.T C3N-01524 CCRCC WGS tumor CPT0077310009 CPT0077310009.WholeGenome.RP-1303.bam 66448595831 BAM aligned CPTAC3 8472f5f0-a706-48a9-9a17-df3a3bbb2bf1 dbb06bdd7c11691c7111e664cda814ec {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor"} -C3N-01524.WGS.T.hg38 C3N-01524 CCRCC WGS tumor CPT0077310009 5e8dd278-8b37-41fa-a827-7f417da498cd_gdc_realn.bam 100101202357 BAM harmonized CPTAC3 35dc1060-2818-46b3-9e62-7b105a2cef0b abe8b0907608c6276baebadfe35b3888 {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor"} -C3N-01524.WXS.A C3N-01524 CCRCC WXS tissue_normal CPT0077320009 CPT0077320009.WholeExome.RP-1303.bam 27904957628 BAM aligned CPTAC3 1da4493a-6d9f-4e13-bbf6-34e8fc6d449f 70158484c8bc66f6c14d8b137acac681 {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.WXS.A.hg38 C3N-01524 CCRCC WXS tissue_normal CPT0077320009 5e4c455f-4a8c-4065-b845-df6d85a8df55_wxs_gdc_realn.bam 37385199539 BAM harmonized CPTAC3 5f7f3caa-8e88-4940-b380-220cd188bc9d dafb75eff0c74a114eb6007c3d6245f6 {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01524.WXS.N C3N-01524 CCRCC WXS blood_normal CPT0077410002 CPT0077410002.WholeExome.RP-1303.bam 28508864202 BAM aligned CPTAC3 ccb8c5bc-852c-4154-8bb9-964be4ab8529 9e1ddc8480d1394d4be21788b9f54531 {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01524.WXS.N.hg38 C3N-01524 CCRCC WXS blood_normal CPT0077410002 492c07b1-0c0c-4b13-b2d2-db8a6694d819_gdc_realn.bam 38788722501 BAM harmonized CPTAC3 65168a7a-2fd4-4413-bd46-5753add070d2 38f971bfeb8521c47ad0b8850309f96f {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01524.WXS.T C3N-01524 CCRCC WXS tumor CPT0077310009 CPT0077310009.WholeExome.RP-1303.bam 24779494762 BAM aligned CPTAC3 f18e2d6f-3786-40b7-ad58-2fe501432dd7 909e6d8652b4758ac91626fd72a65a0e {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor"} -C3N-01524.WXS.T.hg38 C3N-01524 CCRCC WXS tumor CPT0077310009 5e8dd278-8b37-41fa-a827-7f417da498cd_gdc_realn.bam 34597436053 BAM harmonized CPTAC3 3257506d-9d0c-4517-9c74-e098097b6536 7766b7120908afbaacd922227be0aeaa {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_12d1b8af.WXS.T C3N-01525 UCEC WXS tumor CPT0095890076 CPT0095890076.WholeExome.RP-1303.bam 27022501021 BAM aligned CPTAC3 1248440e-a461-419d-93ca-d1d399692f7f 5e07074be504773ca0370ae3616d7f6a {"aliquot_tag": "DUP_12d1b8af", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_12d1b8af.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890076 f4c2e7b7-08f2-4abc-b52d-4842eaa9e78b_wxs_gdc_realn.bam 37950909774 BAM harmonized CPTAC3 5685bc3b-ecb9-4058-b58a-fe3118e1a5e8 5ef79dfd0cdaba91f4ba9e8413dcf13d {"aliquot_tag": "DUP_12d1b8af", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_15bc7cb6.WXS.T C3N-01525 UCEC WXS tumor CPT0095890072 CPT0095890072.WholeExome.RP-1303.bam 21426214445 BAM aligned CPTAC3 fe0a0cc2-ce3c-4ab1-82c3-416752063a30 447d1524e445d74f34c42d1f55b64c5e {"aliquot_tag": "DUP_15bc7cb6", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_15bc7cb6.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890072 2117ac73-5586-461d-bb92-d4d586780f0a_wxs_gdc_realn.bam 29268967625 BAM harmonized CPTAC3 020e0007-170f-4c68-ae95-9b9b0826000d 72f28c24cc5ce17be9b6ccb17030a531 {"aliquot_tag": "DUP_15bc7cb6", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_1673489c.WXS.T C3N-01525 UCEC WXS tumor CPT0095870049 CPT0095870049.WholeExome.RP-1303.bam 19488129987 BAM aligned CPTAC3 f6e72ede-837f-4ff3-9575-2e558fdfafd9 183679f6252b26d9ab6b01f268b309fb {"aliquot_tag": "DUP_1673489c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_1673489c.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870049 7b68fc83-7d8c-4a84-909c-baa1ca390828_wxs_gdc_realn.bam 26791037124 BAM harmonized CPTAC3 1c289884-4bd0-401b-b30e-26ba425bfa17 924ae3083568a7c161b4690e092cab6d {"aliquot_tag": "DUP_1673489c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_1b3f1ef.WXS.T C3N-01525 UCEC WXS tumor CPT0095870051 CPT0095870051.WholeExome.RP-1303.bam 17019942693 BAM aligned CPTAC3 c2522a71-9fa1-4d64-84dc-be9f1b1b85cd d8424ac307da1b61b4f3379e8e91dfbf {"aliquot_tag": "DUP_1b3f1ef", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_1b3f1ef.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870051 51879f48-43b4-4bb0-9e93-58dc0f9c76bb_wxs_gdc_realn.bam 23603471019 BAM harmonized CPTAC3 116b4c66-10b0-4718-87f0-31c00afb1c85 d424d8c51bb92796d9929d194a16a43b {"aliquot_tag": "DUP_1b3f1ef", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_65d68839.WGS.T C3N-01525 UCEC WGS tumor CPT0095890077 CPT0095890077.WholeGenome.RP-2158.bam 36327290039 BAM aligned CPTAC3 32ca4cbb-4449-44fe-b140-ab93a8f124a3 1cedb0cda2516f11945ea45a8ec64ce6 {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_65d68839.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890077 a0a8413c-e99e-4913-97f2-bbfd8e059eac_wgs_gdc_realn.bam 107659002653 BAM harmonized CPTAC3 ba9bfacd-e671-4d39-92bb-aa9dbc1a306e b84dcbd5f30279fd651159842b341c00 {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_65d68839.WXS.T C3N-01525 UCEC WXS tumor CPT0095890077 CPT0095890077.WholeExome.RP-1303.bam 23446043722 BAM aligned CPTAC3 82102bee-764b-4a07-9824-93425c1acb43 924c2fc6028ae7899db1c05bdd800a16 {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_65d68839.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890077 a0a8413c-e99e-4913-97f2-bbfd8e059eac_wxs_gdc_realn.bam 32264744686 BAM harmonized CPTAC3 4b5fb1dc-7cfe-4b5b-9194-c71eea8c2129 76ff92b890cd42ed82a04aee89c7044f {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_86cc550d.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.chimeric.gdc_realn.bam 129831164 BAM chimeric harmonized CPTAC3 578ec35f-b113-4290-95b8-4499f194ccc2 399943a82f19dbdc521804fc0e80ae03 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_86cc550d.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.genomic.gdc_realn.bam 8732983752 BAM genomic harmonized CPTAC3 cbec2155-f475-4d39-b5c2-e28c797d190b 77726a525f5bc09ccbd1a45540b47cb8 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_86cc550d.RNA-Seq.S7_L002_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R1_001.fastq.gz 3529331134 FASTQ S7_L002_R1 unaligned CPTAC3 9fa3175c-9bb4-4dda-adba-95a01bf8173e c45541178d2f3a18221bf30166a28fde {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_86cc550d.RNA-Seq.S7_L002_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R2_001.fastq.gz 3841105305 FASTQ S7_L002_R2 unaligned CPTAC3 77fc7ff3-05e0-4893-a795-e691b77d746b 7139602946c1f6f8e2c8b25331ddf375 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_86cc550d.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.transcriptome.gdc_realn.bam 2705133091 BAM transcriptome harmonized CPTAC3 2265916e-fe83-410e-b1d1-bcb7f924ca34 6ea6ffba815af286e7fa7d3057d28fd2 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_8bd8e915.WXS.T C3N-01525 UCEC WXS tumor CPT0095890075 CPT0095890075.WholeExome.RP-1303.bam 26480060080 BAM aligned CPTAC3 d1702bbe-9ae5-41f1-9043-17337ad9b89e 1f354041484648271637997b0c0b0368 {"aliquot_tag": "DUP_8bd8e915", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_8bd8e915.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890075 dd2dacf0-bf50-42ce-acf7-6d2f7f3248b1_wxs_gdc_realn.bam 36714646517 BAM harmonized CPTAC3 bca2179e-c656-47a8-8ee6-b48390538b46 edfa01dd0999a1da6de4830eccbb692c {"aliquot_tag": "DUP_8bd8e915", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_92c3d854.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.chimeric.gdc_realn.bam 186727152 BAM chimeric harmonized CPTAC3 9a18ee9e-6fc7-405d-aa5c-1d6988980234 48d849917a899e3354f1d0b8b17244b0 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_92c3d854.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.genomic.gdc_realn.bam 7431541643 BAM genomic harmonized CPTAC3 6201e2cf-3016-4244-8e98-3e86f62667aa ba9065d2e378b5f99f825d8187e32a59 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_92c3d854.RNA-Seq.S10_L003_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R1_001.fastq.gz 3146864941 FASTQ S10_L003_R1 unaligned CPTAC3 45bb7f89-e151-4eda-a814-544c0fd0549c 4ee7e01c9957485e2b20c597eb1cdcbf {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_92c3d854.RNA-Seq.S10_L003_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R2_001.fastq.gz 3493627102 FASTQ S10_L003_R2 unaligned CPTAC3 795da625-4686-4f20-ba6c-313b56083ebc dcad7c01e5ea17fb65435c4a516ce422 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_92c3d854.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.transcriptome.gdc_realn.bam 5736426442 BAM transcriptome harmonized CPTAC3 a39db008-d470-422a-9dc6-550cd5a9bfc4 422792d35e5f6ed25040f1006a7995b6 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_98baa055.WXS.T C3N-01525 UCEC WXS tumor CPT0095870052 CPT0095870052.WholeExome.RP-1303.bam 21791915492 BAM aligned CPTAC3 415658f6-8f36-4d3d-9990-7fe5a7167635 d961308def9c767931fac91e5fbf0f3e {"aliquot_tag": "DUP_98baa055", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_98baa055.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870052 24b02a9f-2789-4007-a627-7d1790062aa2_wxs_gdc_realn.bam 29891291715 BAM harmonized CPTAC3 5fbca83b-75e5-486f-8c72-17d72092cf20 29b94b7fee13e2cfe84cf33c628c2baf {"aliquot_tag": "DUP_98baa055", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_b058c7bc.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.chimeric.gdc_realn.bam 144239742 BAM chimeric harmonized CPTAC3 55192e90-fb6f-4611-b41f-b5d960b91d07 1095b2879b737367c409c0f223012088 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_b058c7bc.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.genomic.gdc_realn.bam 8799061097 BAM genomic harmonized CPTAC3 74429a0d-ad0f-41e2-aa71-62be18c994f7 83f2be064ed3e79f777f4b1d6c7d1446 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_b058c7bc.RNA-Seq.S8_L003_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R1_001.fastq.gz 3907360321 FASTQ S8_L003_R1 unaligned CPTAC3 1e3ad2be-2624-4e61-b8c3-931c8dca073b 1ec1d3c5e1b433299c606c8d220ce065 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_b058c7bc.RNA-Seq.S8_L003_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R2_001.fastq.gz 4336799956 FASTQ S8_L003_R2 unaligned CPTAC3 8e95d8e9-59b6-4d1a-9210-4056896e3e03 49da2981cbca809be2e8adeba7a0c92a {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_b058c7bc.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.transcriptome.gdc_realn.bam 7119069658 BAM transcriptome harmonized CPTAC3 b790e519-732f-41ed-a455-2dfcb652fff8 92031817c42ea150063e2358eb1af3a0 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_ca74df7.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.chimeric.gdc_realn.bam 151518130 BAM chimeric harmonized CPTAC3 31c245f5-6916-4733-a6dc-a833d946c171 3ee5fb7ecdaee1a9261c331d214b0595 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_ca74df7.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.genomic.gdc_realn.bam 9006773662 BAM genomic harmonized CPTAC3 33243fa1-9041-4d28-83ce-e81ad950dc7b 2bd08b8291946488e5b851ecec142c68 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_ca74df7.RNA-Seq.S9_L003_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R1_001.fastq.gz 3712958149 FASTQ S9_L003_R1 unaligned CPTAC3 3b7b0a34-b123-419b-9ac2-5565acc07871 0ef021b0c079535ff65e8030a5122111 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_ca74df7.RNA-Seq.S9_L003_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R2_001.fastq.gz 4058507606 FASTQ S9_L003_R2 unaligned CPTAC3 f2551767-5466-4543-8dca-29bd5fac5227 558414e7a2f826d7588fedd4604f4e42 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_ca74df7.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.transcriptome.gdc_realn.bam 5229709088 BAM transcriptome harmonized CPTAC3 8938f76d-7ce4-4dc7-b6b7-0bed77a9366b 1b34a8194e4129c30f8bb25b31108aaa {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_efbd90c3.WXS.T C3N-01525 UCEC WXS tumor CPT0095870053 CPT0095870053.WholeExome.RP-1303.bam 16912365183 BAM aligned CPTAC3 0b5550f1-4829-487d-8cb3-bbf13008dc5b dea42f64c6cb77ce4850831f539ada21 {"aliquot_tag": "DUP_efbd90c3", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_efbd90c3.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870053 2144d11e-2194-494d-8354-e5014f9ec937_wxs_gdc_realn.bam 23224598583 BAM harmonized CPTAC3 52d88fe4-04b8-43bb-b4d6-8d5056b2e015 edc54281ed972f2ceb53c2b5d679c88d {"aliquot_tag": "DUP_efbd90c3", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_f6a6a182.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.chimeric.gdc_realn.bam 90013996 BAM chimeric harmonized CPTAC3 43203b7a-d562-4a08-83b5-172d7d52c8d2 27d839f89ec28ade9fd89563c5443205 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_f6a6a182.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.genomic.gdc_realn.bam 8719173405 BAM genomic harmonized CPTAC3 b597082a-dcca-4d3a-8968-f5cc4c1f505f 2f9107cc861d90a6cd593097fdb66739 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_f6a6a182.RNA-Seq.S6_L002_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R1_001.fastq.gz 3585068661 FASTQ S6_L002_R1 unaligned CPTAC3 4adddeac-120c-4141-a6f4-b05e33665f70 43ff86c137d00a9976e28006b10bd981 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_f6a6a182.RNA-Seq.S6_L002_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R2_001.fastq.gz 3987437061 FASTQ S6_L002_R2 unaligned CPTAC3 75a7a693-b6db-4d1a-8ac8-878278053533 d42865f60f98c1d600ef8cf7901f82ed {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_f6a6a182.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.transcriptome.gdc_realn.bam 4964978370 BAM transcriptome harmonized CPTAC3 18b45c89-ad9c-4d6d-81d7-eb71f7b233d2 49e69519b448c656b137e93ece6154e9 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fbb21d9a.WGS.T C3N-01525 UCEC WGS tumor CPT0095890070 CPT0095890070.WholeGenome.RP-2158.bam 28398963253 BAM aligned CPTAC3 09d8902f-682a-4991-b0e1-621ec52bed2e 8bf2fd7f96ff96d49ded6e35d3fba41d {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fbb21d9a.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890070 ae065acd-6d37-4cce-9711-f1f08861cd33_wgs_gdc_realn.bam 84193932648 BAM harmonized CPTAC3 2cc1e692-94b8-45a2-a8a0-cd2c311800e6 229e2f81ba36be29aaeb764db0f62139 {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fbb21d9a.WXS.T C3N-01525 UCEC WXS tumor CPT0095890070 CPT0095890070.WholeExome.RP-1303.bam 19159112452 BAM aligned CPTAC3 6275b4ea-7303-474d-b2ff-688ff0ddc0dd 035c1c2e058694fa1f51862fecb56ee7 {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fbb21d9a.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890070 ae065acd-6d37-4cce-9711-f1f08861cd33_wxs_gdc_realn.bam 26973505169 BAM harmonized CPTAC3 a807d6fa-9051-4ecb-8530-55ac4132b176 895766006c63931e5c75a05cb73c7ba0 {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fcdfd983.WGS.T C3N-01525 UCEC WGS tumor CPT0095890074 CPT0095890074.WholeGenome.RP-2158.bam 31754941052 BAM aligned CPTAC3 ee144f84-bd39-4d5a-a407-98418cc058cf cd229273c086d815d193408b4758e539 {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fcdfd983.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890074 40060511-6d67-4a8a-a00f-9eac7a9c5162_wgs_gdc_realn.bam 94125675917 BAM harmonized CPTAC3 409cee47-278c-4d2e-bbd7-66e1070f883c 56d428a44879fdf1801701c2b819af3b {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fcdfd983.WXS.T C3N-01525 UCEC WXS tumor CPT0095890074 CPT0095890074.WholeExome.RP-1303.bam 20732270877 BAM aligned CPTAC3 15b499c5-49dd-41b6-b15d-542b4646e6dc 30d865ccf17da7ab5711fdbd2e53f4a9 {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.DUP_fcdfd983.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890074 40060511-6d67-4a8a-a00f-9eac7a9c5162_wxs_gdc_realn.bam 28379074189 BAM harmonized CPTAC3 09a58bd7-4e93-4fa0-a069-fa53dd0110b7 4740d43befddcf5361722a5db1ecaf4b {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-01525.MethArray.Green.T C3N-01525 UCEC Methylation_Array tumor CPT0095880009 202234380058_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 68dca642-1c48-462e-82c7-4a99fe470bdb 30961ecb851ac4b9cb4c1b94dea3a792 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor"} -C3N-01525.MethArray.Red.T C3N-01525 UCEC Methylation_Array tumor CPT0095880009 202234380058_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 b1d8a7ef-df8a-407b-bc32-568c80877569 c9eafed1fadbd8c61ebe01d20991e88a {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor"} -C3N-01525.miRNA-Seq.A.hg38 C3N-01525 UCEC miRNA-Seq tissue_normal CPT0095900009 e25c0ecf-b634-4ae0-b11d-64ef7250f215_mirnaseq_gdc_realn.bam 320603950 BAM harmonized CPTAC3 87e5eb1a-e437-44ba-a1b4-0de6f8342c0f 6f8d832fa3190a2138a680ec530c8ae6 {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.miRNA-Seq.S12_L005_R1.A C3N-01525 UCEC miRNA-Seq tissue_normal CPT0095900009 181113_UNC31-K00269_0164_AH23NNBBXY_CCAACA_S12_L005_R1_001.unaln.bam 285208232 BAM S12_L005_R1 unaligned CPTAC3 0d977c17-0e4c-4cf3-b803-cafa447165d4 e365cb60b23bd9d2e596db90adb167f8 {"aliquot_tag": "ALQ_b63822d", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.miRNA-Seq.S21_L008_R1.T C3N-01525 UCEC miRNA-Seq tumor CPT0095880006 181108_UNC31-K00269_0163_BH23TVBBXY_GTTTCG_S21_L008_R1_001.unaln.bam 203340092 BAM S21_L008_R1 unaligned CPTAC3 03688d58-6cf8-4e67-8f32-63265f9878ec d42a1f8f53b7f5d6d862804a9f5d46b9 {"aliquot_tag": "ALQ_60f007d8", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.miRNA-Seq.T.hg38 C3N-01525 UCEC miRNA-Seq tumor CPT0095880006 b8288b74-d636-485b-ace0-684bc83b8175_mirnaseq_gdc_realn.bam 225028917 BAM harmonized CPTAC3 1726a0d7-0c4b-4f15-9d7c-372edf2e73d8 9134e53d4901af10d5919e1acf909a8d {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.chimeric.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.chimeric.gdc_realn.bam 31303373 BAM chimeric harmonized CPTAC3 87c3cad8-ac89-48f5-86a0-c42e66966751 144245516a0a54a0319afe87a88a2ed7 {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.chimeric.gdc_realn.bam 71991431 BAM chimeric harmonized CPTAC3 26d3dc7c-a2ec-4fd4-9db0-6a63c381e6be 290dffdab3c5b49b641c68cf16fdd3e1 {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.chimeric.gdc_realn.bam 139842204 BAM chimeric harmonized CPTAC3 bd05e96b-d9ef-4425-9806-91a9bb364854 0496f7a18b286fdcd6c7dfb69da178b8 {"aliquot_tag": "ALQ_35c841de", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.genomic.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.genomic.gdc_realn.bam 9244695401 BAM genomic harmonized CPTAC3 c77de9e0-ab02-4aa5-b99e-c6ffdcda35ba 8788e53f1ebedbc6b14773db04c2f228 {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.genomic.gdc_realn.bam 8611960259 BAM genomic harmonized CPTAC3 a6a086ee-2ea1-4e8d-b990-0cf2af6b03aa ab652e892ce9a787b59349276e35b0fd {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.genomic.gdc_realn.bam 10033705698 BAM genomic harmonized CPTAC3 b05a6b36-5837-4dfd-b5a4-e58900f0107c 3f50417244d46aa534c845fc94d86fb9 {"aliquot_tag": "ALQ_35c841de", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.S21_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R1_001.fastq.gz 5637990199 FASTQ S21_R1 unaligned CPTAC3 a1451b01-248c-4285-963e-16c135adf598 81d3a64eac7d65b95b8c1cb079c97310 {"aliquot_tag": "ALQ_35c841de", "sample": "S21", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.S21_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R2_001.fastq.gz 5904919547 FASTQ S21_R2 unaligned CPTAC3 cb9b077f-8845-4efd-95a9-70b814ca2b7e e03568454399523eab470530ec38a015 {"aliquot_tag": "ALQ_35c841de", "sample": "S21", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.S27_L007_R1.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R1_001.fastq.gz 3801524004 FASTQ S27_L007_R1 unaligned CPTAC3 60d4d2d6-e06e-4e47-8114-072fabb42fd6 622598c17fbf66de8eece500c710a54a {"aliquot_tag": "ALQ_b63822d", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.RNA-Seq.S27_L007_R2.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R2_001.fastq.gz 4006838452 FASTQ S27_L007_R2 unaligned CPTAC3 b1878470-eeb5-4cd8-b802-ee18ced97730 29d47df9f015f40fd11c32faebba4bb7 {"aliquot_tag": "ALQ_b63822d", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.RNA-Seq.S63_L008_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R1_001.fastq.gz 3760186423 FASTQ S63_L008_R1 unaligned CPTAC3 ea3cf705-6b2f-4777-8911-7348e171ab00 282045f8c42e0c03ee2cf1e99f72dc34 {"aliquot_tag": "ALQ_60f007d8", "sample": "S63", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.S63_L008_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R2_001.fastq.gz 4053079023 FASTQ S63_L008_R2 unaligned CPTAC3 8a9c0d57-959d-4c5f-b922-750d72b0c8d5 17fe8b43bc6e8bcdad8c1aa45b3f9d0c {"aliquot_tag": "ALQ_60f007d8", "sample": "S63", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.transcriptome.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.transcriptome.gdc_realn.bam 10980079599 BAM transcriptome harmonized CPTAC3 ff73f225-5935-41a1-b3b1-0debffcaaf5d 4685d3b4e3d0e200ab38dd600a3326db {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.transcriptome.gdc_realn.bam 8550228516 BAM transcriptome harmonized CPTAC3 b25ace4e-2b58-428f-90c6-a0416606ea55 6d67decd2a836aa9693789b10133a0a1 {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor"} -C3N-01525.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.transcriptome.gdc_realn.bam 5540806729 BAM transcriptome harmonized CPTAC3 d7763eb4-536c-4dc7-a93a-8ac549ebdbf9 eb30c2201035ed03082930b2759a4c76 {"aliquot_tag": "ALQ_35c841de", "gdc_sample_type": "Primary Tumor"} -C3N-01525.WGS.A C3N-01525 UCEC WGS tissue_normal CPT0095900006 CPT0095900006.WholeGenome.RP-1303.bam 66675489743 BAM aligned CPTAC3 6fb78171-6661-48a1-b884-0dd47659cc23 7121cd62b1244f18f7e24b362ad41a8a {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.WGS.A.hg38 C3N-01525 UCEC WGS tissue_normal CPT0095900006 6636828c-15a6-483d-ade1-0d697874131a_wgs_gdc_realn.bam 98443324645 BAM harmonized CPTAC3 d282953d-5e60-457c-966c-f6233255e43f 37eeae0780cdba41710668339661f68a {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.WGS.N C3N-01525 UCEC WGS blood_normal CPT0095910002 CPT0095910002.WholeGenome.RP-1303.bam 69965816220 BAM aligned CPTAC3 afd2f3d9-9105-40f1-8fd0-0e1ed412a2bb 9b937f0790777358f13d69ad9f580460 {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal"} -C3N-01525.WGS.N.hg38 C3N-01525 UCEC WGS blood_normal CPT0095910002 983de87d-c165-48e5-963d-970fad538bf7_wgs_gdc_realn.bam 103028139543 BAM harmonized CPTAC3 a12a0859-002e-47f5-869f-240c8964517c 04900f45832d9325314df04e60b3bca6 {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal"} -C3N-01525.WGS.T C3N-01525 UCEC WGS tumor CPT0095880009 CPT0095880009.WholeGenome.RP-1303.bam 75189427081 BAM aligned CPTAC3 c42cf6df-dd58-424b-b429-cd07fdf062bf 4defae3ef6f7a703d7f75c4a08e721a9 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor"} -C3N-01525.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095880009 8f21acac-0d82-485f-8eb5-072a6e2a866b_wgs_gdc_realn.bam 108433341840 BAM harmonized CPTAC3 20b38ee9-5582-478e-8305-db960a2f88e7 1326e0c18d19d8fa5a91e7cf57908773 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor"} -C3N-01525.WXS.A C3N-01525 UCEC WXS tissue_normal CPT0095900006 CPT0095900006.WholeExome.RP-1303.bam 30231434427 BAM aligned CPTAC3 aee8b25f-05d7-4c3b-a4ab-5d4568d05b85 12f20d850c5384ad4cd1ca807d29827d {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.WXS.A.hg38 C3N-01525 UCEC WXS tissue_normal CPT0095900006 6636828c-15a6-483d-ade1-0d697874131a_wxs_gdc_realn.bam 40245771429 BAM harmonized CPTAC3 7c2c92e2-d2b0-4f69-963e-ae300f46ba45 f1143a04ac84c371d41acb0d96864609 {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01525.WXS.N C3N-01525 UCEC WXS blood_normal CPT0095910002 CPT0095910002.WholeExome.RP-1303.bam 26561618983 BAM aligned CPTAC3 f5c4cc58-63fd-472e-ac7f-fe2814242bda a0b7363e288464b0ee2bac0ced45ea0c {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal"} -C3N-01525.WXS.N.hg38 C3N-01525 UCEC WXS blood_normal CPT0095910002 983de87d-c165-48e5-963d-970fad538bf7_wxs_gdc_realn.bam 36184960828 BAM harmonized CPTAC3 54e3c9e5-a839-4c25-85ef-9520c184c0da eda17b99583a2c47fb4d386a73ac8845 {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal"} -C3N-01525.WXS.T C3N-01525 UCEC WXS tumor CPT0095880009 CPT0095880009.WholeExome.RP-1303.bam 37250048620 BAM aligned CPTAC3 27f969ab-576c-48aa-b395-e97da4be6de3 b199366010083a4d8692b41a45dd90e3 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor"} -C3N-01525.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095880009 8f21acac-0d82-485f-8eb5-072a6e2a866b_wxs_gdc_realn.bam 51857851993 BAM harmonized CPTAC3 ce3160d2-cfc6-430e-b141-c931891de669 70ccc1713f3a46ef8c0274122e630c68 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor"} -C3N-01526.MethArray.Green.T C3N-01526 UCEC Methylation_Array tumor CPT0096010009 202234370093_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bf513f79-a95a-4dd3-98b1-49e1c945732c 1a019cf03595ace7afd874a92ad7ebc4 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor"} -C3N-01526.MethArray.Red.T C3N-01526 UCEC Methylation_Array tumor CPT0096010009 202234370093_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 cbc5c6f1-a129-4355-8d30-148454a70b15 bc0fe013aa60f1a56f889088edd6f6a0 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor"} -C3N-01526.miRNA-Seq.A.hg38 C3N-01526 UCEC miRNA-Seq tissue_normal CPT0096040009 675a502d-a9db-421e-975e-d74e2c9fe707_mirnaseq_gdc_realn.bam 337801643 BAM harmonized CPTAC3 d3d8d935-1589-4ce2-896f-2db41c90b8d4 6e562994dab6a074f2af1f94bac6d3c6 {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.miRNA-Seq.S13_L005_R1.A C3N-01526 UCEC miRNA-Seq tissue_normal CPT0096040009 181113_UNC31-K00269_0164_AH23NNBBXY_CGGAAT_S13_L005_R1_001.unaln.bam 291738050 BAM S13_L005_R1 unaligned CPTAC3 ceca221e-31fa-4e42-9e08-b3af94a039ea 66571a7b1d05aa2cbc0609b2170bc761 {"aliquot_tag": "ALQ_e8046fb8", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.miRNA-Seq.S22_L008_R1.T C3N-01526 UCEC miRNA-Seq tumor CPT0096010006 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L008_R1_001.unaln.bam 158220765 BAM S22_L008_R1 unaligned CPTAC3 c6da161a-80e7-4f9c-a93b-d734f606a82b 88e0435bf0d2df805d3214898c82857a {"aliquot_tag": "ALQ_b05bfd59", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01526.miRNA-Seq.T.hg38 C3N-01526 UCEC miRNA-Seq tumor CPT0096010006 c6a5b694-d9bf-4797-98b7-219e0aa6668a_mirnaseq_gdc_realn.bam 172486611 BAM harmonized CPTAC3 db6edaf4-8231-416e-9609-0721677350a3 4253814aa7ce611a4c13302b4ff75441 {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.chimeric.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.chimeric.gdc_realn.bam 23230743 BAM chimeric harmonized CPTAC3 4fc45de2-a0ef-4c65-8c55-8598089fb7b3 c304074b4362a666c1719f17b98cba10 {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.RNA-Seq.chimeric.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.chimeric.gdc_realn.bam 75737232 BAM chimeric harmonized CPTAC3 659971ce-8e2b-4464-98a6-ec5d2cb60a1b 1c674db876fe46cbd39fa97c486a47af {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.chimeric.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.chimeric.gdc_realn.bam 354037650 BAM chimeric harmonized CPTAC3 67e30fae-afd2-496e-8ddc-19a2406505cf ab9735e89d25258882682fa663a7a189 {"aliquot_tag": "ALQ_e563bb5f", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.genomic.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.genomic.gdc_realn.bam 10945318530 BAM genomic harmonized CPTAC3 3d4616e6-c393-44c1-882d-642242becc79 0b7b6ad2ab8451f2f6a76240c091540f {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.RNA-Seq.genomic.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.genomic.gdc_realn.bam 8481269034 BAM genomic harmonized CPTAC3 957285e7-59ea-4809-a6f2-5fa57e44c2b7 b3544f54fa1f54f5895c69ba6927d05c {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.genomic.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.genomic.gdc_realn.bam 16229256111 BAM genomic harmonized CPTAC3 9fe5990b-6460-4e3d-a966-98a6014ccab1 bbf7181fe704077f09c5ddb35ffe3454 {"aliquot_tag": "ALQ_e563bb5f", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.S22_L006_R1.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 3643577017 FASTQ S22_L006_R1 unaligned CPTAC3 0c29467b-acde-475c-a5ff-55a1d8dac7ea 6fc30101a2f39c4a2182a607ef6d5e37 {"aliquot_tag": "ALQ_e8046fb8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.RNA-Seq.S22_L006_R2.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 3895644250 FASTQ S22_L006_R2 unaligned CPTAC3 00710e15-20d7-48b0-a6dd-3d43506fdd63 90187447d72960bd70ee7e04e7228285 {"aliquot_tag": "ALQ_e8046fb8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.RNA-Seq.S39_R1.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R1_001.fastq.gz 9537553949 FASTQ S39_R1 unaligned CPTAC3 cfdc8516-703e-459c-a2ce-ceae446125be a28d9e28e3c8d8bc4d2bd84797e4bd08 {"aliquot_tag": "ALQ_e563bb5f", "sample": "S39", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.S39_R2.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R2_001.fastq.gz 9925497092 FASTQ S39_R2 unaligned CPTAC3 1c4995ac-2e52-47bc-8896-9ec45e4ce331 3680e26a1b76a59749ec5649bc74b9c5 {"aliquot_tag": "ALQ_e563bb5f", "sample": "S39", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.S65_L008_R1.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R1_001.fastq.gz 4256256205 FASTQ S65_L008_R1 unaligned CPTAC3 8578f4e1-2cd8-485a-802a-4bc4c087ba62 f29a6246992383a8f6bd51814309408c {"aliquot_tag": "ALQ_b05bfd59", "sample": "S65", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.S65_L008_R2.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R2_001.fastq.gz 4462628347 FASTQ S65_L008_R2 unaligned CPTAC3 c2f960a7-f449-4c54-a4b4-1d25e49ed1f2 314445a4eb8889167e73242e24e131e7 {"aliquot_tag": "ALQ_b05bfd59", "sample": "S65", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.transcriptome.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.transcriptome.gdc_realn.bam 10607416640 BAM transcriptome harmonized CPTAC3 08eb6ff2-4a6d-49f4-b976-1a5edb297d1d aca4fb00222c6d1c20764f1c57b24b21 {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.RNA-Seq.transcriptome.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.transcriptome.gdc_realn.bam 10103139315 BAM transcriptome harmonized CPTAC3 40a6261e-5538-4cc2-8b39-e0c21c435365 86ce6a690effdacae316f120e18a2ad9 {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor"} -C3N-01526.RNA-Seq.transcriptome.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.transcriptome.gdc_realn.bam 8484050950 BAM transcriptome harmonized CPTAC3 f5f809ec-b84f-4d54-a559-90d423087240 1b4f5338f2b10a261b42baf7fed72051 {"aliquot_tag": "ALQ_e563bb5f", "gdc_sample_type": "Primary Tumor"} -C3N-01526.WGS.A C3N-01526 UCEC WGS tissue_normal CPT0096040006 CPT0096040006.WholeGenome.RP-1303.bam 61802213737 BAM aligned CPTAC3 9be73bc2-7368-444f-a494-c67f3d48b88a 1bcd28d179f82338ef4070ad902f6927 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.WGS.A.hg38 C3N-01526 UCEC WGS tissue_normal CPT0096040006 8b96444c-9b82-4d36-aaa3-09c03a0e72f3_wgs_gdc_realn.bam 88796923552 BAM harmonized CPTAC3 a4db60e3-b255-434b-b7fb-5e206b67d60c 6b0d516e0ba495821198867b91d66a08 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.WGS.N C3N-01526 UCEC WGS blood_normal CPT0096050002 CPT0096050002.WholeGenome.RP-1303.bam 55158001907 BAM aligned CPTAC3 04ef166e-c2f5-4741-8979-e00a95e35479 0b0743fbd33136ebb71c1b1376a35514 {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal"} -C3N-01526.WGS.N.hg38 C3N-01526 UCEC WGS blood_normal CPT0096050002 4b7869c4-9fe6-44b4-a679-433417679ee9_wgs_gdc_realn.bam 79847900603 BAM harmonized CPTAC3 9c10e788-99e6-44e1-96f7-7ec4f126c6b0 97c6826c26dc9bb18018bf50ea7be6c5 {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal"} -C3N-01526.WGS.T C3N-01526 UCEC WGS tumor CPT0096010009 CPT0096010009.WholeGenome.RP-1303.bam 64637314489 BAM aligned CPTAC3 80436414-c559-4afa-98c7-9da32695551f acc0529df6d836d27319cf78ae794713 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor"} -C3N-01526.WGS.T.hg38 C3N-01526 UCEC WGS tumor CPT0096010009 fc290422-a284-4bc5-b7aa-bf50020b1109_wgs_gdc_realn.bam 95298152978 BAM harmonized CPTAC3 f44eed9a-be64-491b-86ec-34b2ca2d0f11 670ef6162ec97996000ea286db2a6cc4 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor"} -C3N-01526.WXS.A C3N-01526 UCEC WXS tissue_normal CPT0096040006 CPT0096040006.WholeExome.RP-1303.bam 41648050466 BAM aligned CPTAC3 c39b3dac-20c4-4308-be7e-97a142ccd629 350671c11432dd30456b7a90011ea130 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.WXS.A.hg38 C3N-01526 UCEC WXS tissue_normal CPT0096040006 8b96444c-9b82-4d36-aaa3-09c03a0e72f3_wxs_gdc_realn.bam 57336503999 BAM harmonized CPTAC3 9b2f3612-8a93-4b13-a359-b2fb5b271a2e ff091aadde5d52a8b078fe7813ce3057 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01526.WXS.N C3N-01526 UCEC WXS blood_normal CPT0096050002 CPT0096050002.WholeExome.RP-1303.bam 30348662295 BAM aligned CPTAC3 02d38ae2-8a45-43f7-a6f0-5e7b0c338cb6 c6123317069a538a716bdef9e3e91181 {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal"} -C3N-01526.WXS.N.hg38 C3N-01526 UCEC WXS blood_normal CPT0096050002 4b7869c4-9fe6-44b4-a679-433417679ee9_wxs_gdc_realn.bam 42058061742 BAM harmonized CPTAC3 60feffa9-8041-4475-b79d-790c49b0942b ad0cd18c855fa8678214f1d66287cf3e {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal"} -C3N-01526.WXS.T C3N-01526 UCEC WXS tumor CPT0096010009 CPT0096010009.WholeExome.RP-1303.bam 41693145058 BAM aligned CPTAC3 5142c326-ede8-4a50-8cb6-077d5228e55c b82796f18509a7a697f20533f4f1c230 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor"} -C3N-01526.WXS.T.hg38 C3N-01526 UCEC WXS tumor CPT0096010009 fc290422-a284-4bc5-b7aa-bf50020b1109_wxs_gdc_realn.bam 57408159726 BAM harmonized CPTAC3 0b03531c-76dd-4e1e-a0c7-20727c66203d 9ff3898c0e203f08c704cc9efa8da3c7 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor"} -C3N-01529.MethArray.Green.T C3N-01529 UCEC Methylation_Array tumor CPT0097440009 202234370095_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 ef2e6c0e-fba1-4fe8-80d5-fb2cb19e3b09 50f9c556218414e9749f0419ab8439fd {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor"} -C3N-01529.MethArray.Red.T C3N-01529 UCEC Methylation_Array tumor CPT0097440009 202234370095_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 457401a6-7b53-44f7-ab10-ef18c5d10dfa a045faedf3947e37c98ca295d0af43dc {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor"} -C3N-01529.miRNA-Seq.S23_L008_R1.T C3N-01529 UCEC miRNA-Seq tumor CPT0097440006 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L008_R1_001.unaln.bam 165082438 BAM S23_L008_R1 unaligned CPTAC3 2330acc0-16a7-43e3-99a5-d942757c295a a23deb8cb6e0a7a4736381a16ac25b77 {"aliquot_tag": "ALQ_455d3b8b", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01529.miRNA-Seq.T.hg38 C3N-01529 UCEC miRNA-Seq tumor CPT0097440006 52451cb0-9737-48ab-8b90-d8170421b021_mirnaseq_gdc_realn.bam 183330653 BAM harmonized CPTAC3 6489527b-b5ff-4f70-ac8b-453a354db5fa 19f612c600f9a062632ef982f4283efd {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.chimeric.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.chimeric.gdc_realn.bam 75940792 BAM chimeric harmonized CPTAC3 25d0d10c-7eb8-42a4-a7c5-64c9a55b065c a6af1c077f37b509e1a1ebc2ba3198be {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.chimeric.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.chimeric.gdc_realn.bam 221228530 BAM chimeric harmonized CPTAC3 105acb6f-ae3b-45fe-8f5e-90a3a8d72bb7 4a7c8926f56139aa07abf2a871a13717 {"aliquot_tag": "ALQ_10657d8d", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.genomic.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.genomic.gdc_realn.bam 7758723413 BAM genomic harmonized CPTAC3 1271be93-0e7b-4b2c-b92f-a3619ab8d7e9 168a3836f940236b54343e17692981a3 {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.genomic.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.genomic.gdc_realn.bam 10298801408 BAM genomic harmonized CPTAC3 4ef5adfa-fbad-4923-95f6-5da8b53ceac3 ee02f2b0089a9a6dfa64736df3d2edbd {"aliquot_tag": "ALQ_10657d8d", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.S15_R1.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R1_001.fastq.gz 6414094236 FASTQ S15_R1 unaligned CPTAC3 72c35a6f-3f72-4362-8596-1093fafbd01b d6495e5c6134b6b35f2c23a7a0f5ff89 {"aliquot_tag": "ALQ_10657d8d", "sample": "S15", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.S15_R2.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R2_001.fastq.gz 6567530947 FASTQ S15_R2 unaligned CPTAC3 970ae1ae-cd05-498e-bb9b-40f4b574d5bb 4e35e73bd007a6b2bce5b1cbdc16ba08 {"aliquot_tag": "ALQ_10657d8d", "sample": "S15", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.S55_L007_R1.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R1_001.fastq.gz 3757630695 FASTQ S55_L007_R1 unaligned CPTAC3 0e6df3cf-f883-4b5f-9d7b-2bc837a601d6 85de2f6276e633d0805aa26c9a432818 {"aliquot_tag": "ALQ_455d3b8b", "sample": "S55", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.S55_L007_R2.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R2_001.fastq.gz 4009823687 FASTQ S55_L007_R2 unaligned CPTAC3 0ca2762c-1af8-4387-8b4a-1b32e58a6430 c9ac2a268e0975ea277234fa63e24aed {"aliquot_tag": "ALQ_455d3b8b", "sample": "S55", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.transcriptome.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.transcriptome.gdc_realn.bam 7763166968 BAM transcriptome harmonized CPTAC3 5688a66a-281b-45aa-ad3f-ec9e977fe2e4 6d567b34deab89b49b7bd78d79bda025 {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor"} -C3N-01529.RNA-Seq.transcriptome.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.transcriptome.gdc_realn.bam 7306600954 BAM transcriptome harmonized CPTAC3 0de9a0b7-93b0-404c-a740-b7a1b64ee50f 834d4e8146927de84d4e1ec4665f11ec {"aliquot_tag": "ALQ_10657d8d", "gdc_sample_type": "Primary Tumor"} -C3N-01529.WGS.N C3N-01529 UCEC WGS blood_normal CPT0097470002 CPT0097470002.WholeGenome.RP-1303.bam 51561880329 BAM aligned CPTAC3 b041aafe-96f0-4ba7-95e1-1e4e1a9eb953 6da440e0e80f3561f278c870474bee02 {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal"} -C3N-01529.WGS.N.hg38 C3N-01529 UCEC WGS blood_normal CPT0097470002 2d6f437b-7532-4f34-85da-c400876414af_wgs_gdc_realn.bam 75306443453 BAM harmonized CPTAC3 6db3a460-5559-42fa-a749-f662651a4a0e 5b270f1259fbae12470bcc080376a65f {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal"} -C3N-01529.WGS.T C3N-01529 UCEC WGS tumor CPT0097440009 CPT0097440009.WholeGenome.RP-1303.bam 63236724570 BAM aligned CPTAC3 ba4eaf41-83eb-41f8-87c8-e163f7c2014f 175d6ef21c91aae1f0e68b9ec04b7b4b {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor"} -C3N-01529.WGS.T.hg38 C3N-01529 UCEC WGS tumor CPT0097440009 f5ca6776-3248-415a-86d1-48ec87f211d6_wgs_gdc_realn.bam 91707836189 BAM harmonized CPTAC3 3a5b3098-f05f-4e96-b3e2-5ce6a99e4d59 3f434e206d8d5d3a233b25f5b98d4a47 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor"} -C3N-01529.WXS.N C3N-01529 UCEC WXS blood_normal CPT0097470002 CPT0097470002.WholeExome.RP-1303.bam 48255066723 BAM aligned CPTAC3 8bf32f0e-fb2e-4bd3-a82d-5b6c5c7c2c75 d793fe22382abdd6a73aa8cb7580242f {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal"} -C3N-01529.WXS.N.hg38 C3N-01529 UCEC WXS blood_normal CPT0097470002 2d6f437b-7532-4f34-85da-c400876414af_wxs_gdc_realn.bam 65690263407 BAM harmonized CPTAC3 e98e0298-2b45-4c60-ae37-fd3d7b29a777 91d34bbae41f8c04d8441535098386a2 {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal"} -C3N-01529.WXS.T C3N-01529 UCEC WXS tumor CPT0097440009 CPT0097440009.WholeExome.RP-1303.bam 41482211502 BAM aligned CPTAC3 96fc723e-da7e-4360-9028-100cfbf9af6a 3d5104233cce6bb826b7871a556b2db2 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor"} -C3N-01529.WXS.T.hg38 C3N-01529 UCEC WXS tumor CPT0097440009 f5ca6776-3248-415a-86d1-48ec87f211d6_wxs_gdc_realn.bam 56483401842 BAM harmonized CPTAC3 91cf1023-d004-44d3-9fde-b9a7615a8aa2 910ac656d80561865706663d20e8de37 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor"} -C3N-01535.MethArray.Green.T C3N-01535 SAR Methylation_Array tumor CPT0096740009 202234380069_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 0ba9a00a-a40b-4d19-9761-d7b04c1eb048 f9bb50c3dc006bb73a4a1412437b1eac {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor"} -C3N-01535.MethArray.Red.T C3N-01535 SAR Methylation_Array tumor CPT0096740009 202234380069_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 09829546-1d49-40a9-8115-81c5a5d8ae28 981d9abd3b3b0b20788f8c080ee470f4 {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor"} -C3N-01535.miRNA-Seq.A.hg38 C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 ade6a093-e55e-488c-bea0-6c4e36d0ee67_mirnaseq_gdc_realn.bam 247358824 BAM harmonized CPTAC3 0d18d188-1158-42b2-b819-ac7b3794c0ca 3c57d1861345e4c2c09493c33116dfe0 {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01535.miRNA-Seq.S12_L001_R1.T C3N-01535 SAR miRNA-Seq tumor CPT0096740013 181113_UNC31-K00269_0164_AH23NNBBXY_CCAACA_S12_L001_R1_001.unaln.bam 267267458 BAM S12_L001_R1 unaligned CPTAC3 9cbb18e3-8713-4df7-808a-7fb607634d79 2626e08b27ce311d1560ffa039339f9c {"aliquot_tag": "ALQ_ccf875f", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01535.miRNA-Seq.S46_L002_R1.A C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 181119_UNC31-K00269_0165_AH27WCBBXY_CGTACG_S46_L002_R1_001.unaln.bam 225624841 BAM S46_L002_R1 unaligned CPTAC3 8b8b9381-56f9-4caf-962a-43dd16dde57c 619564677a70ac3ddac0699061fb0a3b {"aliquot_tag": "ALQ_760fd43f", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01535.miRNA-Seq.T.hg38 C3N-01535 SAR miRNA-Seq tumor CPT0096740013 f7991b35-a91c-4d15-8189-856d0c9e43d3_mirnaseq_gdc_realn.bam 300855156 BAM harmonized CPTAC3 43b30c39-2dd6-4674-8e3c-7eab01e9bb10 0bd2474bb3f21cd9b22c8b3d2c98d783 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor"} -C3N-01535.RNA-Seq.chimeric.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.chimeric.gdc_realn.bam 19850821 BAM chimeric harmonized CPTAC3 6f5567d6-baa6-4754-9a26-2719fdf9e4ae 5190962ec18678c4f776299d41c3f698 {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01535.RNA-Seq.chimeric.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.chimeric.gdc_realn.bam 106887677 BAM chimeric harmonized CPTAC3 2fed2f40-f740-41b9-b883-f84ee6b181bc f0fe0c59e2ea414cc6530a2695ace557 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor"} -C3N-01535.RNA-Seq.genomic.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.genomic.gdc_realn.bam 9686837419 BAM genomic harmonized CPTAC3 c3bf8e94-f46e-4572-bc32-b3e6e6e3fabd 7a959512a4ad22c1902f88081cb3aae0 {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01535.RNA-Seq.genomic.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.genomic.gdc_realn.bam 8515236795 BAM genomic harmonized CPTAC3 2bca2f29-a340-4dc4-adec-d75abd774a19 919881d8b7a0ac6ea7f99ffcc2feeee6 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor"} -C3N-01535.RNA-Seq.S1_L001_R1.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3653410476 FASTQ S1_L001_R1 unaligned CPTAC3 6b0e8cf9-219e-4301-bb63-379927bf4852 195327ec7d13c98b14560342532a17d6 {"aliquot_tag": "ALQ_ccf875f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01535.RNA-Seq.S1_L001_R2.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3990728012 FASTQ S1_L001_R2 unaligned CPTAC3 8e139d1b-b60c-4ff8-8ea7-6c597fe1e478 b1d83d6c5455e5eea28d0a7a3dd09eeb {"aliquot_tag": "ALQ_ccf875f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01535.RNA-Seq.S22_L006_R1.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R1_001.fastq.gz 3818859532 FASTQ S22_L006_R1 unaligned CPTAC3 77598c2d-fca6-4735-8e13-22554daa653f bcaa858b1e322cfca5292c8ed4a432f4 {"aliquot_tag": "ALQ_760fd43f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01535.RNA-Seq.S22_L006_R2.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R2_001.fastq.gz 4118902029 FASTQ S22_L006_R2 unaligned CPTAC3 f0c1a7c7-5ff6-4359-8fd0-3a4238e91ec2 028d198c9f7f0c415f6380eecf0030ee {"aliquot_tag": "ALQ_760fd43f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01535.RNA-Seq.transcriptome.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.transcriptome.gdc_realn.bam 11539693728 BAM transcriptome harmonized CPTAC3 04120d9c-b75a-4473-ae43-3862a185ee16 af9f89b281e88cf009d6a731b098364e {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01535.RNA-Seq.transcriptome.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.transcriptome.gdc_realn.bam 11391299524 BAM transcriptome harmonized CPTAC3 21e95235-9895-40e1-888e-3de999e6cec0 c65b8a16a801cd5e68539233a1a97258 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor"} -C3N-01535.WGS.N C3N-01535 SAR WGS blood_normal CPT0096770002 CPT0096770002.WholeGenome.RP-1303.bam 70043643540 BAM aligned CPTAC3 961023a0-4be9-49f1-86c1-1fbaf9419bb4 6a4e9241011a413aaf67208d77dad2c7 {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01535.WGS.N.hg38 C3N-01535 SAR WGS blood_normal CPT0096770002 d65c5477-0bca-4777-88f5-f26e7d05d590_wgs_gdc_realn.bam 101626224533 BAM harmonized CPTAC3 6a521b51-0470-4cac-b8d2-6acaf2501d2e 167c273434e29e901497ee1e27b82cc5 {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01535.WGS.T C3N-01535 SAR WGS tumor CPT0096740009 CPT0096740009.WholeGenome.RP-1303.bam 67040660119 BAM aligned CPTAC3 685e047c-b598-4761-a1d2-d2cdcbfc4277 84b1c5cfefe5a9c0d8ed6fbd708a600e {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor"} -C3N-01535.WGS.T.hg38 C3N-01535 SAR WGS tumor CPT0096740009 4512b872-bb21-4e24-a60b-686a09b541dd_wgs_gdc_realn.bam 97657344939 BAM harmonized CPTAC3 6f88785d-b947-4a4f-9cd2-745614809970 175b1e91027e33d82705b5361d55438c {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor"} -C3N-01535.WXS.N C3N-01535 SAR WXS blood_normal CPT0096770002 CPT0096770002.WholeExome.RP-1303.bam 26513610908 BAM aligned CPTAC3 ee8e4763-1dd4-4fc4-a9a1-dd5011482ddc 499e498b1525bd9d862e6cbcba96d4f3 {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01535.WXS.N.hg38 C3N-01535 SAR WXS blood_normal CPT0096770002 d65c5477-0bca-4777-88f5-f26e7d05d590_wxs_gdc_realn.bam 36650094967 BAM harmonized CPTAC3 f9cd3cc2-91a6-4d1f-85a5-29f30a085140 68e823f834f7c70c306c5a4e95285aba {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01535.WXS.T C3N-01535 SAR WXS tumor CPT0096740009 CPT0096740009.WholeExome.RP-1303.bam 28315153162 BAM aligned CPTAC3 985392d1-5f27-43d4-9408-4a078b920545 b79c16f152c93c52f4a9ae4c55e37d3b {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor"} -C3N-01535.WXS.T.hg38 C3N-01535 SAR WXS tumor CPT0096740009 4512b872-bb21-4e24-a60b-686a09b541dd_wxs_gdc_realn.bam 39679711894 BAM harmonized CPTAC3 f0996f63-279f-4b2e-b1bc-4a8e7dc5b1f0 391cc47277411ced8e3cec472aac63ef {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor"} -C3N-01536.MethArray.Green.A C3N-01536 CCRCC Methylation_Array tissue_normal CPT0096900006 204930630068_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1e8d4c40-7df4-442c-9a0d-d981cb6c8596 5605b2a03e507f5675f60b9705db62b3 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.MethArray.Green.T C3N-01536 CCRCC Methylation_Array tumor CPT0096890009 202234380024_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bbd01878-7c76-4b18-9f23-febbc30f4ffa 6c658f0b5ba52a09acce77fe9da16190 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor"} -C3N-01536.MethArray.Red.A C3N-01536 CCRCC Methylation_Array tissue_normal CPT0096900006 204930630068_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 72f675c2-a12e-491f-9b62-5db8eb8643f8 e73388280d17161e3d25f7079f4a7093 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.MethArray.Red.T C3N-01536 CCRCC Methylation_Array tumor CPT0096890009 202234380024_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 ce569375-4159-454c-b60a-169b8277d789 22df829e34203a03119597e9992c0acf {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor"} -C3N-01536.miRNA-Seq.A.hg38 C3N-01536 CCRCC miRNA-Seq tissue_normal CPT0096900009 b348db52-d24c-4a45-bc34-61ee21ff036c_mirnaseq_gdc_realn.bam 249017950 BAM harmonized CPTAC3 f0f18551-a5af-4335-b9c3-d753c36a0a7e 8c2593ef2e76e287a911e4d79ca06e86 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.miRNA-Seq.S24_L008_R1.T C3N-01536 CCRCC miRNA-Seq tumor CPT0096890006 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L008_R1_001.unaln.bam 270630827 BAM S24_L008_R1 unaligned CPTAC3 8b406386-6ef7-498c-a069-251e66d38194 a5a57ad166d453db24be02040e216615 {"aliquot_tag": "ALQ_6c7834f5", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01536.miRNA-Seq.S28_L002_R1.A C3N-01536 CCRCC miRNA-Seq tissue_normal CPT0096900009 181119_UNC31-K00269_0165_AH27WCBBXY_TGACCA_S28_L002_R1_001.unaln.bam 230513861 BAM S28_L002_R1 unaligned CPTAC3 f8d5f59e-85ed-4520-b3a7-7fc36924cbdc 75f2ec2ed498355b0eefea1279f9c4d6 {"aliquot_tag": "ALQ_3a8b98b0", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.miRNA-Seq.T.hg38 C3N-01536 CCRCC miRNA-Seq tumor CPT0096890006 67238b6d-639d-4c69-8949-abe385ad8f27_mirnaseq_gdc_realn.bam 293903149 BAM harmonized CPTAC3 281525b4-a978-4b3b-858e-0b1971b474da 36b500f61106252d6e52d71b277736a1 {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor"} -C3N-01536.RNA-Seq.chimeric.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.chimeric.gdc_realn.bam 45793412 BAM chimeric harmonized CPTAC3 2bbe2c01-1bb4-431a-a5fa-dfef05dd1b46 f421182d510c230245991ae2fa96b745 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.RNA-Seq.chimeric.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.chimeric.gdc_realn.bam 91113663 BAM chimeric harmonized CPTAC3 ef66a021-56c6-41fa-a1ad-e085bf4d2ded a57748803f9929f7c65dae7aae5b8304 {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor"} -C3N-01536.RNA-Seq.genomic.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.genomic.gdc_realn.bam 9301910311 BAM genomic harmonized CPTAC3 82f4e93b-c502-4d56-a72c-5bd202cd4403 43ee4c628db86b3e36bb0987790fb7e9 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.RNA-Seq.genomic.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.genomic.gdc_realn.bam 8294701247 BAM genomic harmonized CPTAC3 03f0e3dc-cd15-4ca4-a869-b222013d4dfc f82e1e9ab19ddd7a4bcb2c9fd8ab9d2f {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor"} -C3N-01536.RNA-Seq.S12_L003_R1.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R1_001.fastq.gz 4090350533 FASTQ S12_L003_R1 unaligned CPTAC3 e38cbc47-698a-4200-9052-204aee3e99a8 f9ae310764ea15c8f9e5ad7f3ab57397 {"aliquot_tag": "ALQ_3a8b98b0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.RNA-Seq.S12_L003_R2.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R2_001.fastq.gz 4448053190 FASTQ S12_L003_R2 unaligned CPTAC3 20864a46-7a3d-41f5-a606-e64ba2bd50f8 e4bd9362fb81902e3a29dbe97db41ecc {"aliquot_tag": "ALQ_3a8b98b0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.RNA-Seq.S59_L007_R1.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R1_001.fastq.gz 3935856886 FASTQ S59_L007_R1 unaligned CPTAC3 660e64b7-4317-4354-bd0d-940ab05c3cdf db89cee89a25aa2f1f16a3c33301d6d3 {"aliquot_tag": "ALQ_6c7834f5", "sample": "S59", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01536.RNA-Seq.S59_L007_R2.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R2_001.fastq.gz 4257805410 FASTQ S59_L007_R2 unaligned CPTAC3 92e4b3b1-36db-464a-9351-b029e2fc459a 2c7e8ea4063863f302ac242be22ace67 {"aliquot_tag": "ALQ_6c7834f5", "sample": "S59", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01536.RNA-Seq.transcriptome.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.transcriptome.gdc_realn.bam 10533006090 BAM transcriptome harmonized CPTAC3 717bc3fd-374a-4fa3-b2aa-942079ee21ae 3db43928ae0625f118f69a8f66af2057 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.RNA-Seq.transcriptome.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.transcriptome.gdc_realn.bam 10015442160 BAM transcriptome harmonized CPTAC3 ad2883f1-20f1-4369-9322-d8270f7d0931 91391f69b49038bd17b4086bd90b5eb7 {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor"} -C3N-01536.WGS.A C3N-01536 CCRCC WGS tissue_normal CPT0096900006 CPT0096900006.WholeGenome.RP-1303.bam 66239733938 BAM aligned CPTAC3 6c768e7d-6f2e-4296-a981-d5d8c121f76a ea76b6eda42a5ed5e3ab6ad178ed0917 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.WGS.A.hg38 C3N-01536 CCRCC WGS tissue_normal CPT0096900006 e9b92874-68a0-45ca-b763-a078f3620f7f_wgs_gdc_realn.bam 95953713592 BAM harmonized CPTAC3 5e3b987c-8694-4021-8a76-1b2ffd4bf9cf f2d9e59f5a4e6083a0acdb6ad2090b09 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.WGS.N C3N-01536 CCRCC WGS blood_normal CPT0096910002 CPT0096910002.WholeGenome.RP-1303.bam 59230312683 BAM aligned CPTAC3 25f9836f-10a9-4f77-81c0-40fcc4db1132 90e6f23fd48c583cb76ead239a2c0181 {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal"} -C3N-01536.WGS.N.hg38 C3N-01536 CCRCC WGS blood_normal CPT0096910002 08b37d7b-4086-4c9b-bb5c-9b530201e4e0_wgs_gdc_realn.bam 87199326446 BAM harmonized CPTAC3 f76113e4-d3dd-4978-8bd9-23fd02ebe3f1 92ee005b165f933b1f9e5edf5d9350cd {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal"} -C3N-01536.WGS.T C3N-01536 CCRCC WGS tumor CPT0096890009 CPT0096890009.WholeGenome.RP-1303.bam 61515437996 BAM aligned CPTAC3 b233f0e1-ffb6-4af7-a9a7-e4671ae3e423 eca5e19e826b66d5158bbd45a1602e26 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor"} -C3N-01536.WGS.T.hg38 C3N-01536 CCRCC WGS tumor CPT0096890009 43bac8ef-91b7-4a9d-a5f3-f62cb9450fdd_wgs_gdc_realn.bam 89176016652 BAM harmonized CPTAC3 9477dd58-dade-4c6f-b24a-6acc98c95d0a 4a6945d8726b1bea86fb6a05c51c2b53 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor"} -C3N-01536.WXS.A C3N-01536 CCRCC WXS tissue_normal CPT0096900006 CPT0096900006.WholeExome.RP-1303.bam 33548306570 BAM aligned CPTAC3 d7f01d34-d5fa-4683-9b35-9caadb5798ed 4f33ccc714f2b7ca17781e587cddbee9 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.WXS.A.hg38 C3N-01536 CCRCC WXS tissue_normal CPT0096900006 e9b92874-68a0-45ca-b763-a078f3620f7f_wxs_gdc_realn.bam 44921916694 BAM harmonized CPTAC3 840e855e-98b4-4394-bd3b-b0ceadf6511d 4752be0d83f02cb6bcd9b6038f0913d7 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01536.WXS.N C3N-01536 CCRCC WXS blood_normal CPT0096910002 CPT0096910002.WholeExome.RP-1303.bam 53499578503 BAM aligned CPTAC3 fc490f58-b16d-4477-b2ee-e2eecfd4422f 1815065722285ed06abcae0dd3c71ae5 {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal"} -C3N-01536.WXS.N.hg38 C3N-01536 CCRCC WXS blood_normal CPT0096910002 08b37d7b-4086-4c9b-bb5c-9b530201e4e0_wxs_gdc_realn.bam 72279996282 BAM harmonized CPTAC3 f336a277-f3c6-4e3a-956b-f42097c04904 b94801d3d4a02294f9da90d36c22fadd {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal"} -C3N-01536.WXS.T C3N-01536 CCRCC WXS tumor CPT0096890009 CPT0096890009.WholeExome.RP-1303.bam 32064740506 BAM aligned CPTAC3 1d9c4b5b-6eb2-4059-886f-6135995ab97b 5ea2fc72b2632b7b16952d217ae9d6d8 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor"} -C3N-01536.WXS.T.hg38 C3N-01536 CCRCC WXS tumor CPT0096890009 43bac8ef-91b7-4a9d-a5f3-f62cb9450fdd_wxs_gdc_realn.bam 44121671956 BAM harmonized CPTAC3 d160ae28-fc2c-44f3-9aaa-795e4bf280e0 d914530052b5fdc1e0a0d23287ae7920 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor"} -C3N-01537.MethArray.Green.T C3N-01537 UCEC Methylation_Array tumor CPT0097010009 202234360025_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c65a2797-38f3-4553-8567-d99d861d7604 548d069e38b632b8ab92ce5b51d476f8 {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor"} -C3N-01537.MethArray.Red.T C3N-01537 UCEC Methylation_Array tumor CPT0097010009 202234360025_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 8389d5c4-4c6f-420f-890a-1085913018fa 90d09e463b935314070c138e5a338cff {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor"} -C3N-01537.miRNA-Seq.S25_L007_R1.T C3N-01537 UCEC miRNA-Seq tumor CPT0097010006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTGAT_S25_L007_R1_001.unaln.bam 214308257 BAM S25_L007_R1 unaligned CPTAC3 f8c385f1-843d-4649-a21a-4a501cd6e35c 748660cb68c7ea39ba20f5a2c7387634 {"aliquot_tag": "ALQ_162cf6ed", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01537.miRNA-Seq.T.hg38 C3N-01537 UCEC miRNA-Seq tumor CPT0097010006 e2391a17-5d82-4178-84e3-5a22e36e4b5b_mirnaseq_gdc_realn.bam 230765369 BAM harmonized CPTAC3 86d981ba-127d-4b67-b7ea-0bee81694a8b fc4f1463033e9252805f42aab7f7da6e {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor"} -C3N-01537.RNA-Seq.chimeric.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.chimeric.gdc_realn.bam 81336084 BAM chimeric harmonized CPTAC3 a4299e30-a207-4739-b28f-37f0c6dfff0c 4c4f8746dc7bedd7d625cd24a5b0b384 {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor"} -C3N-01537.RNA-Seq.genomic.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.genomic.gdc_realn.bam 9947269055 BAM genomic harmonized CPTAC3 e871a49b-e54d-496c-a7bb-b26cff29b025 8aff5cffda743759c39a94513d003d52 {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor"} -C3N-01537.RNA-Seq.S60_L007_R1.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R1_001.fastq.gz 4274186903 FASTQ S60_L007_R1 unaligned CPTAC3 c00f784d-3143-4e88-b652-40a42aa38f53 80d126071a4cdca39d78ad71e235b186 {"aliquot_tag": "ALQ_162cf6ed", "sample": "S60", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01537.RNA-Seq.S60_L007_R2.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R2_001.fastq.gz 4759021162 FASTQ S60_L007_R2 unaligned CPTAC3 53445ea6-98ca-4134-a8bb-cd64497935a7 5133ada79294bde8a80689ee10b62158 {"aliquot_tag": "ALQ_162cf6ed", "sample": "S60", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01537.RNA-Seq.transcriptome.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.transcriptome.gdc_realn.bam 8695346254 BAM transcriptome harmonized CPTAC3 c52accad-b0e0-43b9-a372-e8f5e276580e 33746cd38417c7a26782c67460b758e1 {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor"} -C3N-01537.WGS.N C3N-01537 UCEC WGS blood_normal CPT0097050002 CPT0097050002.WholeGenome.RP-1303.bam 54120391438 BAM aligned CPTAC3 efab4a3f-aec8-490c-95bc-bd700e1ec420 07098858535cb37632d98a47a5974ddd {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal"} -C3N-01537.WGS.N.hg38 C3N-01537 UCEC WGS blood_normal CPT0097050002 ef01edb4-ba7c-427e-a2b0-d5099f8d06fb_wgs_gdc_realn.bam 80462406863 BAM harmonized CPTAC3 809337b5-5049-4bb0-942f-b85a59d52743 960886384846b889001479e831d6fef9 {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal"} -C3N-01537.WGS.T C3N-01537 UCEC WGS tumor CPT0097010009 CPT0097010009.WholeGenome.RP-1303.bam 67968033529 BAM aligned CPTAC3 62e6d430-f202-4e98-8a2f-62e5a49c1664 833f613f6b675bcd4f1c372ecd4209eb {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor"} -C3N-01537.WGS.T.hg38 C3N-01537 UCEC WGS tumor CPT0097010009 af300af0-16e5-424e-8f44-acb85517ac35_wgs_gdc_realn.bam 99420362694 BAM harmonized CPTAC3 1c4ad51e-2c49-44ce-855e-8601191e51f1 eab1f593ee190b71148d3a0a205037f2 {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor"} -C3N-01537.WXS.N C3N-01537 UCEC WXS blood_normal CPT0097050002 CPT0097050002.WholeExome.RP-1303.bam 35008647187 BAM aligned CPTAC3 e0ecebcc-1693-4311-abda-f4b80b390f9a e67c03f87ca82a5afe74a7272b04774e {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal"} -C3N-01537.WXS.N.hg38 C3N-01537 UCEC WXS blood_normal CPT0097050002 ef01edb4-ba7c-427e-a2b0-d5099f8d06fb_wxs_gdc_realn.bam 48565122048 BAM harmonized CPTAC3 07b497aa-3dd9-433a-b3fc-1d6ff9c23806 a318b23e31a9db2c91ab8dc96d178c60 {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal"} -C3N-01537.WXS.T C3N-01537 UCEC WXS tumor CPT0097010009 CPT0097010009.WholeExome.RP-1303.bam 40810350630 BAM aligned CPTAC3 fc511a09-fb95-46c1-bae3-bea2b6a7ecc2 b48e96767c63b4c0ad7d91f6e7debeae {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor"} -C3N-01537.WXS.T.hg38 C3N-01537 UCEC WXS tumor CPT0097010009 af300af0-16e5-424e-8f44-acb85517ac35_wxs_gdc_realn.bam 56603549603 BAM harmonized CPTAC3 8896b39a-df49-48b1-97f6-2573ecef6b08 7e0a2937fc4dcde788f84c4eb7e6ce45 {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor"} -C3N-01620.MethArray.Green.T C3N-01620 HNSCC Methylation_Array tumor CPT0095040008 202234380054_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 91525673-16f3-4c58-8ec4-94f6671e350e 69ce7c36ff5ae7662138f521cf5aed81 {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor"} -C3N-01620.MethArray.Red.T C3N-01620 HNSCC Methylation_Array tumor CPT0095040008 202234380054_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 fa7af051-86a1-4464-a2c1-e9adbe34258e 0066cc379847346d7ab2363ce09dd54b {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor"} -C3N-01620.miRNA-Seq.S26_L007_R1.T C3N-01620 HNSCC miRNA-Seq tumor CPT0095040006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L007_R1_001.unaln.bam 194627771 BAM S26_L007_R1 unaligned CPTAC3 25856de4-ec3d-4b73-9a93-c4a19210793a cc01ba68ced2d0a994a5ec64b2ecea49 {"aliquot_tag": "ALQ_495368b4", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01620.miRNA-Seq.T.hg38 C3N-01620 HNSCC miRNA-Seq tumor CPT0095040006 3fcf3ac4-2604-430a-9808-ac4e1f1cd86f_mirnaseq_gdc_realn.bam 213350197 BAM harmonized CPTAC3 90b6502f-09cb-4718-8919-f41b8b7cf311 be9c8c77ce870f8bc3b8a7c64455238f {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.chimeric.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.chimeric.gdc_realn.bam 69995330 BAM chimeric harmonized CPTAC3 406fef01-6454-424c-9b05-c4d2b46cd8c8 2b122e037802452264dc82384c538a46 {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.chimeric.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.chimeric.gdc_realn.bam 44583242 BAM chimeric harmonized CPTAC3 3956b988-7a2a-421e-a2b1-cf55eea4a7d2 2316b0f860ad38f180c16ecef7aff3b6 {"aliquot_tag": "ALQ_e64adf9f", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.genomic.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.genomic.gdc_realn.bam 7298102385 BAM genomic harmonized CPTAC3 4e755fde-b683-4d2d-b246-dd9083b69aa0 42fe4050a3da9a784565d5acb1ddf446 {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.genomic.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.genomic.gdc_realn.bam 7241684475 BAM genomic harmonized CPTAC3 19cb551b-e22c-4f25-8597-70634c48f195 914a01e87c6c807f28a42d89f4a8778f {"aliquot_tag": "ALQ_e64adf9f", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.S24_R1.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R1_001.fastq.gz 3937161859 FASTQ S24_R1 unaligned CPTAC3 a7be9dfc-ed94-4de5-92e2-6ff7f9d9e218 bb135e7ffbb9715ab7aa35109fb1e57a {"aliquot_tag": "ALQ_e64adf9f", "sample": "S24", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.S24_R2.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R2_001.fastq.gz 4471803060 FASTQ S24_R2 unaligned CPTAC3 7590171e-43a8-4d1d-9a36-0a83720882bb a368a3a35589b99ea0c16ddbedc0410f {"aliquot_tag": "ALQ_e64adf9f", "sample": "S24", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.S61_L007_R1.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R1_001.fastq.gz 3420638026 FASTQ S61_L007_R1 unaligned CPTAC3 101fbac5-f118-4d4f-85c2-b8973eab7003 024979749350168bb39f36d2586b8825 {"aliquot_tag": "ALQ_495368b4", "sample": "S61", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.S61_L007_R2.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R2_001.fastq.gz 3676007510 FASTQ S61_L007_R2 unaligned CPTAC3 d2b324b1-0971-4ea9-a765-0c493db0de32 eb4fa897dccb8bf669abf8202575805b {"aliquot_tag": "ALQ_495368b4", "sample": "S61", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.transcriptome.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.transcriptome.gdc_realn.bam 8816786275 BAM transcriptome harmonized CPTAC3 c5640b6e-baf4-45a7-a9a1-566ee962b7e3 a5f22fc85a004058206fa396ed657d63 {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor"} -C3N-01620.RNA-Seq.transcriptome.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.transcriptome.gdc_realn.bam 6199770569 BAM transcriptome harmonized CPTAC3 90bfa36b-84ba-4605-83c8-ea72b075217e d8117662dc1c75fa5c63ac68da0a4977 {"aliquot_tag": "ALQ_e64adf9f", "gdc_sample_type": "Primary Tumor"} -C3N-01620.WGS.N C3N-01620 HNSCC WGS blood_normal CPT0095090002 CPT0095090002.WholeGenome.RP-1303.bam 66896774235 BAM aligned CPTAC3 be2950b0-5ad6-49cc-b2a0-c9a05c7c4e78 2cde713d7537992a62abdb3b82c8288f {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01620.WGS.N.hg38 C3N-01620 HNSCC WGS blood_normal CPT0095090002 af83ea9a-ebb4-4b0b-83c5-c7a546730ab2_wgs_gdc_realn.bam 97682387019 BAM harmonized CPTAC3 4a688896-18be-4b3d-991b-56ccbbf3194e 07901c5080abc7cb23d6a79b5d5f5aa3 {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01620.WGS.T C3N-01620 HNSCC WGS tumor CPT0095040008 CPT0095040008.WholeGenome.RP-1303.bam 63742066560 BAM aligned CPTAC3 b7cd1da1-4e04-48fe-a35a-a121a8b6cba8 8092e26f02aefb81c8a10d52728c1f9b {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor"} -C3N-01620.WGS.T.hg38 C3N-01620 HNSCC WGS tumor CPT0095040008 218efc47-ff68-416d-808f-25eed41215cf_wgs_gdc_realn.bam 92206797943 BAM harmonized CPTAC3 f926d254-a4b7-4874-b557-94618deba359 db2345f11b6f067f6cbb127f92a57bce {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor"} -C3N-01620.WXS.N C3N-01620 HNSCC WXS blood_normal CPT0095090002 CPT0095090002.WholeExome.RP-1303.bam 47982221861 BAM aligned CPTAC3 d55cfd1d-d182-443f-8359-e46b58350b15 a61f44fc403ddfebf07d45efa206bd29 {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01620.WXS.N.hg38 C3N-01620 HNSCC WXS blood_normal CPT0095090002 af83ea9a-ebb4-4b0b-83c5-c7a546730ab2_wxs_gdc_realn.bam 64461335296 BAM harmonized CPTAC3 95976917-9d03-457b-9530-a1096f15d06b 56dd35dd6224b17daa670f8ed13a5eca {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01620.WXS.T C3N-01620 HNSCC WXS tumor CPT0095040008 CPT0095040008.WholeExome.RP-1303.bam 40519068345 BAM aligned CPTAC3 df6bcab0-15bb-4864-941f-28f30abec866 e13422ac35a5f0b931047b31c268d746 {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor"} -C3N-01620.WXS.T.hg38 C3N-01620 HNSCC WXS tumor CPT0095040008 218efc47-ff68-416d-808f-25eed41215cf_wxs_gdc_realn.bam 55436605355 BAM harmonized CPTAC3 c8b3ab18-65cc-4904-9232-fd0437311075 a6eab25aeb5472ef333ac5f7adc4dad3 {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor"} -C3N-01643.MethArray.Green.T C3N-01643 HNSCC Methylation_Array tumor CPT0162890006 203271740119_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2ba782bf-4bd3-42e4-ac89-ae419b433f6b 86d0f8c9646739f73c52611f4a5d6b09 {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor"} -C3N-01643.MethArray.Red.T C3N-01643 HNSCC Methylation_Array tumor CPT0162890006 203271740119_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 24d2384d-c78d-41e1-a089-044c3c2cd51f 2e16aae96a0c783149587fd709e5bd3a {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor"} -C3N-01643.miRNA-Seq.S20_L001_R1.T C3N-01643 HNSCC miRNA-Seq tumor CPT0162890009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L001_R1_001.unaln.bam 261191417 BAM S20_L001_R1 unaligned CPTAC3 ccbbe05f-2a1f-413e-92c8-1d26b8332f29 96c461b16fb1148efd0513330cb3b33d {"aliquot_tag": "ALQ_c6d30b98", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01643.miRNA-Seq.T.hg38 C3N-01643 HNSCC miRNA-Seq tumor CPT0162890009 eec1b1f0-97e1-4776-8603-8254d9bf0102_mirnaseq_gdc_realn.bam 287219894 BAM harmonized CPTAC3 42a97544-5816-41f7-8613-b5e9d5359d65 1efe295398f3c27a2e9b3c10c041f99f {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor"} -C3N-01643.RNA-Seq.chimeric.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.chimeric.gdc_realn.bam 83919279 BAM chimeric harmonized CPTAC3 0e55c46a-7cd9-42fb-9c2f-c6d1a9290512 de399206420ed894c3c693623d83240c {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor"} -C3N-01643.RNA-Seq.genomic.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.genomic.gdc_realn.bam 6158350661 BAM genomic harmonized CPTAC3 23839b7e-fa9a-4f27-8b82-687070367d9c fd9f9e4946817f03162e46a0b1ba76e7 {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor"} -C3N-01643.RNA-Seq.S23_L006_R1.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R1_001.fastq.gz 2836605120 FASTQ S23_L006_R1 unaligned CPTAC3 5787ea66-4b29-4c37-9164-f9ded1ab6a6c c59c8bb6fbfbfdd264ca9b0679a7f864 {"aliquot_tag": "ALQ_c6d30b98", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01643.RNA-Seq.S23_L006_R2.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R2_001.fastq.gz 3262156883 FASTQ S23_L006_R2 unaligned CPTAC3 c6259c4e-6ad1-4843-bc1b-48fbe4ff210d 11dcbfe4c0b76421381a7912446df746 {"aliquot_tag": "ALQ_c6d30b98", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01643.RNA-Seq.transcriptome.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.transcriptome.gdc_realn.bam 8842615098 BAM transcriptome harmonized CPTAC3 981ba168-4ccf-4c6e-9d6f-3fad049cf472 2ad9900f7470ee4b98c8679ff9fe9b09 {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor"} -C3N-01643.WGS.N C3N-01643 HNSCC WGS blood_normal CPT0162920002 CPT0162920002.WholeGenome.RP-1303.bam 79784822241 BAM aligned CPTAC3 1e392dc6-1323-4817-9e9f-8cd7a4893065 a27027a04db28f1d9cab397ea6d5e35c {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01643.WGS.N.hg38 C3N-01643 HNSCC WGS blood_normal CPT0162920002 3a523f18-8fae-4b63-ac71-d5c0b95b0170_wgs_gdc_realn.bam 115358783101 BAM harmonized CPTAC3 27bb5c8d-940b-42ca-b219-4d06c7f98195 c7643817bddc5358af51ea8ef7d5f7dc {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01643.WGS.T C3N-01643 HNSCC WGS tumor CPT0162890006 CPT0162890006.WholeGenome.RP-1303.bam 80084376667 BAM aligned CPTAC3 02fa26c9-66fe-45b9-a2af-35e04ed12097 9046695aad3a5def78d4a4f842e04371 {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor"} -C3N-01643.WGS.T.hg38 C3N-01643 HNSCC WGS tumor CPT0162890006 2cc6a1c3-9405-488f-bf9c-3b10bfc84473_wgs_gdc_realn.bam 117754027414 BAM harmonized CPTAC3 ae648b35-ddd8-4811-af7c-c23da50fbaeb 10afc190cb7de1cfd29da04d4a86baa3 {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor"} -C3N-01643.WXS.N C3N-01643 HNSCC WXS blood_normal CPT0162920002 CPT0162920002.WholeExome.RP-1303.bam 31840487510 BAM aligned CPTAC3 6edabfcc-ae57-407d-af5b-4282bcd0edd8 7599e63ac5e81d3d6e95248f54dc247a {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01643.WXS.N.hg38 C3N-01643 HNSCC WXS blood_normal CPT0162920002 3a523f18-8fae-4b63-ac71-d5c0b95b0170_wxs_gdc_realn.bam 43970397040 BAM harmonized CPTAC3 2d829df4-a5b2-4610-ae9d-2353ea90ae02 d5d3126ff473eeaa3d11c265c47e8863 {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01643.WXS.T C3N-01643 HNSCC WXS tumor CPT0162890006 CPT0162890006.WholeExome.RP-1303.bam 22244306237 BAM aligned CPTAC3 36afcc54-35e4-4d59-bfa8-f6e7eef821eb 3af219b7072e7ff65a8230125184105a {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor"} -C3N-01643.WXS.T.hg38 C3N-01643 HNSCC WXS tumor CPT0162890006 2cc6a1c3-9405-488f-bf9c-3b10bfc84473_wxs_gdc_realn.bam 30304630018 BAM harmonized CPTAC3 74789b19-017d-4da7-86de-230a7709fd8c c7fcc53818c6ec44a4182af3d6c6450c {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor"} -C3N-01645.MethArray.Green.T C3N-01645 HNSCC Methylation_Array tumor CPT0088410009 202234370095_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 416cec05-4c9c-46b9-9323-adc61197a279 86a829f07a340c11227aeff73d5759e7 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor"} -C3N-01645.MethArray.Red.T C3N-01645 HNSCC Methylation_Array tumor CPT0088410009 202234370095_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 8ecc05dd-3de6-433e-8bc2-201f54ef6a6a b07883c659d357cf14630f4c20bc19fc {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor"} -C3N-01645.miRNA-Seq.A.hg38 C3N-01645 HNSCC miRNA-Seq tissue_normal CPT0088430006 66397cdb-552a-4261-aeb5-eaac82a9421f_mirnaseq_gdc_realn.bam 207522515 BAM harmonized CPTAC3 69ef8d4e-62e2-43f4-b8e9-c00a904cc2a5 983678a079adc0e66abb73af041a7278 {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01645.miRNA-Seq.S33_L008_R1.T C3N-01645 HNSCC miRNA-Seq tumor CPT0088410006 180724_UNC32-K00270_0106_BHWK3MBBXX_TAGCTT_S33_L008_R1_001.unaln.bam 379357618 BAM S33_L008_R1 unaligned CPTAC3 c4889f7b-a2b7-4eb6-b3d5-09a2fcaf2d6e 10961e4240e365177081606fd173cfcf {"aliquot_tag": "ALQ_b75fc48c", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01645.miRNA-Seq.S4_L001_R1.A C3N-01645 HNSCC miRNA-Seq tissue_normal CPT0088430006 181119_UNC31-K00269_0165_AH27WCBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 186392916 BAM S4_L001_R1 unaligned CPTAC3 8f08970f-77dd-4db7-b0ab-b09add3b2d65 7de463e84a009e5e30458133f157a9d4 {"aliquot_tag": "ALQ_cd9f97ec", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01645.miRNA-Seq.T.hg38 C3N-01645 HNSCC miRNA-Seq tumor CPT0088410006 df557db2-ee18-42b6-84d9-e178bcdc3981_mirnaseq_gdc_realn.bam 406192942 BAM harmonized CPTAC3 d8a03591-6c7f-4362-8151-b0a7ad36d23b 878c93d8dcbed023ccb23d065d9b4388 {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor"} -C3N-01645.RNA-Seq.chimeric.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.chimeric.gdc_realn.bam 27030231 BAM chimeric harmonized CPTAC3 a4c84361-5112-4d1b-bbe3-857b2b6a452d f9c7a904011c50952fb38221285a8220 {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01645.RNA-Seq.chimeric.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.chimeric.gdc_realn.bam 38754967 BAM chimeric harmonized CPTAC3 588a694d-d450-42ab-9a5a-8a91b85fd7f2 f5b3fd8f2c418aa706d1120e4f29961b {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor"} -C3N-01645.RNA-Seq.genomic.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.genomic.gdc_realn.bam 9080438046 BAM genomic harmonized CPTAC3 e18cf435-511b-4829-86fd-ebda8f084d2c 74fd1f2ee0bb2136f96c420845dea3dd {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01645.RNA-Seq.genomic.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.genomic.gdc_realn.bam 9060136674 BAM genomic harmonized CPTAC3 7a62177c-e814-411d-813f-67dc6bcdf746 27240e13ae3ec286c3b0df5b069a5815 {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor"} -C3N-01645.RNA-Seq.S11_L003_R1.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4328072097 FASTQ S11_L003_R1 unaligned CPTAC3 2048be25-a5d2-4f0a-bed9-ec4a2614235e af791e298c6ec5bbaa6cae5cf25fa40b {"aliquot_tag": "ALQ_b75fc48c", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01645.RNA-Seq.S11_L003_R2.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4801207820 FASTQ S11_L003_R2 unaligned CPTAC3 6a644c2f-2ff7-4afd-8668-943578a54d91 b2c34bf02d1f53da2ce981ebf3f9b924 {"aliquot_tag": "ALQ_b75fc48c", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01645.RNA-Seq.S20_L005_R1.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4280442009 FASTQ S20_L005_R1 unaligned CPTAC3 2db2fa96-3234-4ad2-b8e7-b85dba4b294d aa09d7f9c74979669e8c8c2d8c80126d {"aliquot_tag": "ALQ_cd9f97ec", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01645.RNA-Seq.S20_L005_R2.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4537414006 FASTQ S20_L005_R2 unaligned CPTAC3 b987f708-c205-4346-a37f-1ff39f9cbacc 6079811716e5671e4d3250c5032fed90 {"aliquot_tag": "ALQ_cd9f97ec", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01645.RNA-Seq.transcriptome.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.transcriptome.gdc_realn.bam 12706794641 BAM transcriptome harmonized CPTAC3 078934e7-7d16-4d63-9853-4d888f97b353 f97f677f588b9afe4cbfed901cb4bbc3 {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01645.RNA-Seq.transcriptome.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.transcriptome.gdc_realn.bam 13003250462 BAM transcriptome harmonized CPTAC3 bb2b0254-62c4-4d14-ab75-2c20b9d23175 6130116f2b323174e32d14e559b2b0bf {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor"} -C3N-01645.WGS.N C3N-01645 HNSCC WGS blood_normal CPT0088470002 CPT0088470002.WholeGenome.RP-1303.bam 63333267290 BAM aligned CPTAC3 19bf5c59-a749-4e57-ac5d-0d256e6c2e3a 02ea333624fc62f39b237edea3f054e9 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal"} -C3N-01645.WGS.N.hg38 C3N-01645 HNSCC WGS blood_normal CPT0088470002 80df1466-22ac-4228-96c8-70fa89fd5562_wgs_gdc_realn.bam 93078724190 BAM harmonized CPTAC3 34d5b9b4-f23a-4279-9319-449c715d711f b58d1b5464ca14a5c9a93f5511b5b207 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal"} -C3N-01645.WGS.T C3N-01645 HNSCC WGS tumor CPT0088410009 CPT0088410009.WholeGenome.RP-1303.bam 74769935732 BAM aligned CPTAC3 dbdbbc7c-b85e-4921-aff1-9e48beedc5e5 893b9cd7d9033a223ace9c80aa9db26d {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor"} -C3N-01645.WGS.T.hg38 C3N-01645 HNSCC WGS tumor CPT0088410009 16a5f787-8486-4d36-b8f2-3354ddd700a0_wgs_gdc_realn.bam 110354572599 BAM harmonized CPTAC3 0cf78127-08f2-45ff-b200-57d28e0d4ac4 849e38502d3b943b2f85991084f95804 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor"} -C3N-01645.WXS.N C3N-01645 HNSCC WXS blood_normal CPT0088470002 CPT0088470002.WholeExome.RP-1303.bam 29588473790 BAM aligned CPTAC3 05d5f33f-1924-437e-8ce5-71b996e1c98f 8edd5e7d5360872ec8f0f8a8c3f0ac14 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal"} -C3N-01645.WXS.N.hg38 C3N-01645 HNSCC WXS blood_normal CPT0088470002 80df1466-22ac-4228-96c8-70fa89fd5562_wxs_gdc_realn.bam 41294167690 BAM harmonized CPTAC3 16bebd5f-24a5-493d-9fe0-33369bbbb47d e7e23ada6460237f4da690449267de33 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal"} -C3N-01645.WXS.T C3N-01645 HNSCC WXS tumor CPT0088410009 CPT0088410009.WholeExome.RP-1303.bam 29151713577 BAM aligned CPTAC3 f47d2a02-c363-44cf-9d57-cf4b61638f5b c42bec43266726e51708a2142c06a6b2 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor"} -C3N-01645.WXS.T.hg38 C3N-01645 HNSCC WXS tumor CPT0088410009 16a5f787-8486-4d36-b8f2-3354ddd700a0_wxs_gdc_realn.bam 39299820832 BAM harmonized CPTAC3 e85d142d-5169-42c5-9cdd-393396ab13c3 9056a6b10fac1c7549fc101cbeea76e3 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor"} -C3N-01646.MethArray.Green.A C3N-01646 CCRCC Methylation_Array tissue_normal CPT0088500014 204930640065_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a50156ed-5bd0-4df0-8dc4-f9559569b8de 3be7c98b255fbc253a744617c96a423a {"aliquot_tag": "ALQ_b6766ef4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.MethArray.Green.T C3N-01646 CCRCC Methylation_Array tumor CPT0088480009 202163550115_R04C01_Grn.idat 13676230 IDAT Green NA CPTAC3 f928f712-916d-41a5-a30a-6781df748b8f 9d51bffec66ed73dc8fbf3fd317e6f93 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor"} -C3N-01646.MethArray.Red.A C3N-01646 CCRCC Methylation_Array tissue_normal CPT0088500014 204930640065_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 693656c0-73da-4322-8a35-612d4a4b25b4 5e09a1ba818329034762d1f84d67f540 {"aliquot_tag": "ALQ_b6766ef4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.MethArray.Red.T C3N-01646 CCRCC Methylation_Array tumor CPT0088480009 202163550115_R04C01_Red.idat 13676230 IDAT Red NA CPTAC3 be0af83b-56ee-4361-b79e-435c5504c5e5 0bf10a0ea5690e74ae39f5db1a2447a6 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor"} -C3N-01646.miRNA-Seq.A.hg38 C3N-01646 CCRCC miRNA-Seq tissue_normal CPT0088500006 ca2012d9-b066-4ef9-a3ef-4f1ac71b52bc_mirnaseq_gdc_realn.bam 245504293 BAM harmonized CPTAC3 e1e54d42-9540-42e9-a97d-43fc1a7c7bb4 ed1bf84cf2ebfbf5f698a8ed82292157 {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.miRNA-Seq.S13_L006_R1.T C3N-01646 CCRCC miRNA-Seq tumor CPT0088480006 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L006_R1_001.unaln.bam 178224642 BAM S13_L006_R1 unaligned CPTAC3 a54381c6-555f-4794-aef6-1de1f5daf2b8 b77d4b4e2f2b3167c80a548ccf274880 {"aliquot_tag": "ALQ_ba4fa6fd", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01646.miRNA-Seq.S29_L002_R1.A C3N-01646 CCRCC miRNA-Seq tissue_normal CPT0088500006 181108_UNC31-K00269_0163_BH23TVBBXY_CAACTA_S29_L002_R1_001.unaln.bam 218547190 BAM S29_L002_R1 unaligned CPTAC3 3b09e1de-af9a-42d6-97d4-cabf6fc732f0 f9e10c18303ddbc12f553d4056d77596 {"aliquot_tag": "ALQ_41633e99", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.miRNA-Seq.T.hg38 C3N-01646 CCRCC miRNA-Seq tumor CPT0088480006 608319b0-b2c1-43b5-8c73-5e0d41ea272a_mirnaseq_gdc_realn.bam 198060449 BAM harmonized CPTAC3 c3835a5a-8a99-4a58-a773-6cedee135994 d620a02e131766b5d50f9b3d0c8344db {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor"} -C3N-01646.RNA-Seq.chimeric.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.chimeric.gdc_realn.bam 68561196 BAM chimeric harmonized CPTAC3 b4bacfb8-e6f7-49c4-8908-46693848bf09 bf187d7a0600d93744cebdbcf4bf1f9c {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.RNA-Seq.chimeric.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.chimeric.gdc_realn.bam 37570182 BAM chimeric harmonized CPTAC3 3ad3f01d-55ff-4157-9ef9-2f4fab1b2d71 f952f101a803d086916259955b48a125 {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor"} -C3N-01646.RNA-Seq.genomic.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.genomic.gdc_realn.bam 6192725491 BAM genomic harmonized CPTAC3 49b7c885-4816-489c-a4e3-c5d238bf0224 20a162051585286a94310dc8480fc32c {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.RNA-Seq.genomic.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.genomic.gdc_realn.bam 7290168999 BAM genomic harmonized CPTAC3 b8a37405-49cf-4cbc-90f7-012bc4567568 90d67b517f9b43ca1d2f7e60d5875656 {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor"} -C3N-01646.RNA-Seq.S18_L005_R1.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3695613331 FASTQ S18_L005_R1 unaligned CPTAC3 39cc7d92-b8fc-483b-a7e6-aa8e17b1173f 93138411acaca7710434ff51a9bd1a31 {"aliquot_tag": "ALQ_ba4fa6fd", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01646.RNA-Seq.S18_L005_R2.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3804275294 FASTQ S18_L005_R2 unaligned CPTAC3 0bfa3487-2ce2-406f-b484-badbbed737e0 8755dc95b11a61aed07f1ec0bf57ec6a {"aliquot_tag": "ALQ_ba4fa6fd", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01646.RNA-Seq.S2_L008_R1.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R1_001.fastq.gz 3127975323 FASTQ S2_L008_R1 unaligned CPTAC3 64c20469-68d8-457c-92e4-a6c393f71166 2af549a10111c6ad95800a52b06ebf75 {"aliquot_tag": "ALQ_41633e99", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.RNA-Seq.S2_L008_R2.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R2_001.fastq.gz 3340280919 FASTQ S2_L008_R2 unaligned CPTAC3 2eff898e-bd0f-4274-82fe-e8862845720a aec035c90a49da35818cf5bbd14ab1eb {"aliquot_tag": "ALQ_41633e99", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.RNA-Seq.transcriptome.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.transcriptome.gdc_realn.bam 7880643956 BAM transcriptome harmonized CPTAC3 4582476b-2482-47a2-b46b-8dc3aca29ea8 7c494e8d2e04f90dd73af380ac6dcbb0 {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.RNA-Seq.transcriptome.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.transcriptome.gdc_realn.bam 10756893923 BAM transcriptome harmonized CPTAC3 a0bc2d4f-4e72-4bab-ae76-29b6c01b7129 3110f267ab2102f2d18a3fb72908e5cd {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor"} -C3N-01646.WGS.A C3N-01646 CCRCC WGS tissue_normal CPT0088500009 CPT0088500009.WholeGenome.RP-1303.bam 59516633791 BAM aligned CPTAC3 1b73486d-0797-42ab-adb6-b88d5bba2c15 e40448b298e95aeb4eeecf4b8639ee4a {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.WGS.A.hg38 C3N-01646 CCRCC WGS tissue_normal CPT0088500009 f3018fe2-c6e6-4b40-a9ee-1b3cec6e4fc6_wgs_gdc_realn.bam 88326106360 BAM harmonized CPTAC3 15589b76-2d50-4fcb-9c7d-13b9bb7b8ae2 bfd31ba75020b45e3268410774533998 {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.WGS.N C3N-01646 CCRCC WGS blood_normal CPT0088540001 CPT0088540001.WholeGenome.RP-1303.bam 75692490231 BAM aligned CPTAC3 0466a30f-7319-4529-9374-3c44c6c4e453 b40e272b7b058f6fffce1bcc1b95261b {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal"} -C3N-01646.WGS.N.hg38 C3N-01646 CCRCC WGS blood_normal CPT0088540001 da82f377-04a7-47d3-9ef3-06e9f3e0ea87_gdc_realn.bam 115720961974 BAM harmonized CPTAC3 42cf20b6-c8c3-4e48-8b84-12ddf88dfdef bc3833d9a58f882d0b4a020f221804e0 {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal"} -C3N-01646.WGS.T C3N-01646 CCRCC WGS tumor CPT0088480009 CPT0088480009.WholeGenome.RP-1303.bam 75767928751 BAM aligned CPTAC3 e8014dc8-62e9-41cc-8d44-e222f5cddbd6 72a9fac6b04151b0ee22e5c6b1477d64 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor"} -C3N-01646.WGS.T.hg38 C3N-01646 CCRCC WGS tumor CPT0088480009 2211e92d-464a-4a04-aafe-563f44f28acf_gdc_realn.bam 112759278498 BAM harmonized CPTAC3 01a5797b-6984-43a9-84e2-019876b9ad76 38a6289753fc4a543960d49ff15bffa7 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor"} -C3N-01646.WXS.A C3N-01646 CCRCC WXS tissue_normal CPT0088500009 CPT0088500009.WholeExome.RP-1303.bam 30977709539 BAM aligned CPTAC3 20c21d6a-3dde-4b2e-9198-d0fcc91126be 498f1f0fe05efaf8af7f303bf19d47e5 {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.WXS.A.hg38 C3N-01646 CCRCC WXS tissue_normal CPT0088500009 f3018fe2-c6e6-4b40-a9ee-1b3cec6e4fc6_wxs_gdc_realn.bam 41428131089 BAM harmonized CPTAC3 e5288d42-bf7a-4aa0-916c-74f371eb98c4 133105a3357ffe77493fdba4761255b8 {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01646.WXS.N C3N-01646 CCRCC WXS blood_normal CPT0088540001 CPT0088540001.WholeExome.RP-1303.bam 28434115627 BAM aligned CPTAC3 a131223c-f4db-4c02-a5c9-23b1157bcf6a bb31775fa49040dcd1672434761c435a {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal"} -C3N-01646.WXS.N.hg38 C3N-01646 CCRCC WXS blood_normal CPT0088540001 da82f377-04a7-47d3-9ef3-06e9f3e0ea87_gdc_realn.bam 38675291851 BAM harmonized CPTAC3 b5459b34-72f9-419f-bd0e-bcb1a95d49b1 89249e2ff9f82045bd6eb8675d15b8e2 {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal"} -C3N-01646.WXS.T C3N-01646 CCRCC WXS tumor CPT0088480009 CPT0088480009.WholeExome.RP-1303.bam 26576055195 BAM aligned CPTAC3 98152d1c-1741-49f1-8e14-4ef6d5256500 dab52acd19d1a2774fa5b43573f45647 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor"} -C3N-01646.WXS.T.hg38 C3N-01646 CCRCC WXS tumor CPT0088480009 2211e92d-464a-4a04-aafe-563f44f28acf_gdc_realn.bam 36797472131 BAM harmonized CPTAC3 914712d2-e33c-424c-8bdf-e6664e9dcad8 4f3d2892b9a3498e0c8dcb5a6790a40e {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor"} -C3N-01648.MethArray.Green.A C3N-01648 CCRCC Methylation_Array tissue_normal CPT0088570009 204930630107_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e4d83f50-ccfe-4e42-9695-c487af0df4a3 800adc85a7a8eb4cd9b12e2ca3cdedeb {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.MethArray.Green.T C3N-01648 CCRCC Methylation_Array tumor CPT0088550010 202176290145_R04C01_Grn.idat 13676225 IDAT Green NA CPTAC3 3dc18342-d0c0-4af0-930b-5323b8c9f3de db124f44abdc48c542b8a52c4a34c86c {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor"} -C3N-01648.MethArray.Red.A C3N-01648 CCRCC Methylation_Array tissue_normal CPT0088570009 204930630107_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 36d0ec86-cf53-45bf-9e8c-0da8b9172abc b1cbff6add34b93d0e311de303d76411 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.MethArray.Red.T C3N-01648 CCRCC Methylation_Array tumor CPT0088550010 202176290145_R04C01_Red.idat 13676225 IDAT Red NA CPTAC3 f1afd5d5-2900-43dd-afaa-d69cdfe32bf9 f6d6851d5e1a6a7f3a7b35392c110875 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor"} -C3N-01648.miRNA-Seq.A.hg38 C3N-01648 CCRCC miRNA-Seq tissue_normal CPT0088570006 eca4739f-1713-4344-863d-f52e4e86d332_mirnaseq_gdc_realn.bam 238210578 BAM harmonized CPTAC3 73b6e4c4-d634-4045-8e6d-5930da08f6db b005ff6b55e18e70767a70818204ed00 {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.miRNA-Seq.S14_L006_R1.T C3N-01648 CCRCC miRNA-Seq tumor CPT0088550007 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L006_R1_001.unaln.bam 172823540 BAM S14_L006_R1 unaligned CPTAC3 c8777537-afb3-4b31-91be-ffccd1156053 9bf874b57c026b960c0ecd04e12c31cb {"aliquot_tag": "ALQ_fe84817f", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01648.miRNA-Seq.S30_L002_R1.A C3N-01648 CCRCC miRNA-Seq tissue_normal CPT0088570006 181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L002_R1_001.unaln.bam 212046831 BAM S30_L002_R1 unaligned CPTAC3 a9a0a010-a48f-4b03-a2c8-73fa3b43341d ab920b36d56e5e07d2de405f4d917282 {"aliquot_tag": "ALQ_f343e289", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.miRNA-Seq.T.hg38 C3N-01648 CCRCC miRNA-Seq tumor CPT0088550007 56adbedb-e0ac-4910-a409-17cfccd07127_mirnaseq_gdc_realn.bam 190146724 BAM harmonized CPTAC3 32618a38-831a-4317-bcf8-99bd7f1bf27b a2adf895cf38e0ff5fe3e42ae15030b0 {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor"} -C3N-01648.RNA-Seq.chimeric.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.chimeric.gdc_realn.bam 65262778 BAM chimeric harmonized CPTAC3 e8abdff5-23dc-404e-a3c2-39e26ee4a2ac 4eca7c47c7cf5145b6d04910798db6ea {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.RNA-Seq.chimeric.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.chimeric.gdc_realn.bam 36497596 BAM chimeric harmonized CPTAC3 e7197e45-afe3-46df-b79c-ab15a7399ab6 6d4ef8bd7aa7ec58fd1d46b381d392c1 {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor"} -C3N-01648.RNA-Seq.genomic.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.genomic.gdc_realn.bam 7007394436 BAM genomic harmonized CPTAC3 0bb51a5b-c106-451a-bfaf-278e278fd2b1 8e3d6f8a094918555fc37b720eb380d5 {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.RNA-Seq.genomic.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.genomic.gdc_realn.bam 9444207940 BAM genomic harmonized CPTAC3 b9e16501-2e44-4b48-9525-5a17c88d8baf 4df01c8dd272d6e751081436eae559b0 {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor"} -C3N-01648.RNA-Seq.S17_L005_R1.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R1_001.fastq.gz 4240006926 FASTQ S17_L005_R1 unaligned CPTAC3 24adcbff-dc8f-4a2a-8743-5d5af999a137 ef76cc726694dcea62b25d78678cf85d {"aliquot_tag": "ALQ_fe84817f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01648.RNA-Seq.S17_L005_R2.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R2_001.fastq.gz 4582286319 FASTQ S17_L005_R2 unaligned CPTAC3 c6759e84-3d9a-4b41-b56d-027275d0566e cb306f67d09b5f4d28402ed5118704e1 {"aliquot_tag": "ALQ_fe84817f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01648.RNA-Seq.S7_L008_R1.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R1_001.fastq.gz 3426035225 FASTQ S7_L008_R1 unaligned CPTAC3 c1eb992a-cd8b-4162-bb59-8445736dd867 220a3f6cf7600331f124101f9a12ad2e {"aliquot_tag": "ALQ_f343e289", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.RNA-Seq.S7_L008_R2.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R2_001.fastq.gz 3670632289 FASTQ S7_L008_R2 unaligned CPTAC3 d6133ac8-3651-4422-b367-0d4ef7809290 c99cbf0152974aa7c2bf28d61a33b767 {"aliquot_tag": "ALQ_f343e289", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.RNA-Seq.transcriptome.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.transcriptome.gdc_realn.bam 8079394608 BAM transcriptome harmonized CPTAC3 487c5fa4-f521-4649-a43a-0f99800fde5d 378ac7f36ab15a00090069961f89c147 {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.RNA-Seq.transcriptome.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.transcriptome.gdc_realn.bam 11909719096 BAM transcriptome harmonized CPTAC3 2ba62195-c367-4e72-952f-1e828a012ee9 019d9a10489baca1da00e453898bfd8a {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor"} -C3N-01648.WGS.A C3N-01648 CCRCC WGS tissue_normal CPT0088570009 CPT0088570009.WholeGenome.RP-1303.bam 75332671437 BAM aligned CPTAC3 03e9fe44-c001-442f-8b18-60c8e6d8575e 246bac268aefdef58bfd3fba83116867 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.WGS.A.hg38 C3N-01648 CCRCC WGS tissue_normal CPT0088570009 cd9045bb-8094-4b7f-82bd-791dbd001a66_wgs_gdc_realn.bam 109709800674 BAM harmonized CPTAC3 77144fc9-c29c-431d-a7d1-095e48fe1d15 bf19c14e8fd9438c01327039c675e8f9 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.WGS.N C3N-01648 CCRCC WGS blood_normal CPT0088610002 CPT0088610002.WholeGenome.RP-1303.bam 67154343887 BAM aligned CPTAC3 84aeea74-f79b-4738-9291-bc259e6b5ebb 6c9d0e89fdd1e9b3f377dc3f14448c33 {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01648.WGS.N.hg38 C3N-01648 CCRCC WGS blood_normal CPT0088610002 e428e790-129f-423c-8de5-bae3d520ac67_gdc_realn.bam 101969955051 BAM harmonized CPTAC3 dadf0fda-f806-4d50-b26c-436158e6dda1 b6ee29f20256e269039034a09a7e0a9e {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01648.WGS.T C3N-01648 CCRCC WGS tumor CPT0088550010 CPT0088550010.WholeGenome.RP-1303.bam 58620003668 BAM aligned CPTAC3 09d2ffef-d7e5-4500-92a4-239411897784 d9d7e179cd3a45c1baab7ccfefaf6987 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor"} -C3N-01648.WGS.T.hg38 C3N-01648 CCRCC WGS tumor CPT0088550010 7140cdaf-a885-49f7-9c26-0d0bc980c94c_gdc_realn.bam 87656261431 BAM harmonized CPTAC3 198264d3-ae63-418c-b771-e91dcd11ae06 abdf866abd8ecc74a8926c1fba0461e6 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor"} -C3N-01648.WXS.A C3N-01648 CCRCC WXS tissue_normal CPT0088570009 CPT0088570009.WholeExome.RP-1303.bam 41395214479 BAM aligned CPTAC3 e793e70d-e3b8-4b51-b622-ac6997972f32 12ea6bf3634548ebfe21d02265816bb2 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.WXS.A.hg38 C3N-01648 CCRCC WXS tissue_normal CPT0088570009 cd9045bb-8094-4b7f-82bd-791dbd001a66_wxs_gdc_realn.bam 56208751398 BAM harmonized CPTAC3 dbbecd94-5735-47da-963b-6b06f66d217a 0cb17b0177685694574ddf55a4b0096f {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01648.WXS.N C3N-01648 CCRCC WXS blood_normal CPT0088610002 CPT0088610002.WholeExome.RP-1303.bam 33807818645 BAM aligned CPTAC3 882747e2-1474-45cf-a55f-f59682512060 e71e4d7dc45065251173000e96ea7771 {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01648.WXS.N.hg38 C3N-01648 CCRCC WXS blood_normal CPT0088610002 e428e790-129f-423c-8de5-bae3d520ac67_gdc_realn.bam 46390647338 BAM harmonized CPTAC3 3e92258b-a355-410f-a830-db64c0fbbd25 769e895504d99809c010b5b025f310ae {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01648.WXS.T C3N-01648 CCRCC WXS tumor CPT0088550010 CPT0088550010.WholeExome.RP-1303.bam 34764073069 BAM aligned CPTAC3 9215ffc9-d177-4874-b2cd-b31862f84c68 bfb7d6684738bd96d4c667db37260539 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor"} -C3N-01648.WXS.T.hg38 C3N-01648 CCRCC WXS tumor CPT0088550010 7140cdaf-a885-49f7-9c26-0d0bc980c94c_gdc_realn.bam 48496138169 BAM harmonized CPTAC3 777c5406-1c82-414f-8ff9-050677dc7091 3415cb1c06df380d5fc702bd64e5a1d3 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor"} -C3N-01649.MethArray.Green.A C3N-01649 CCRCC Methylation_Array tissue_normal CPT0088640009 204930640122_R05C01_Grn.idat 13677965 IDAT Green NA CPTAC3 1b26aa79-687b-4b5e-996c-0cfcd3e683e7 35c6b9cefbde33dc0bde7890399bbc41 {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.MethArray.Green.T C3N-01649 CCRCC Methylation_Array tumor CPT0088630009 202234380050_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d1f0e7df-e958-4028-b5ef-c17a1add0691 739bfc791599117221f468e7b86b9009 {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor"} -C3N-01649.MethArray.Red.A C3N-01649 CCRCC Methylation_Array tissue_normal CPT0088640009 204930640122_R05C01_Red.idat 13677965 IDAT Red NA CPTAC3 f92a0548-b7ab-49a9-b10e-68425ffb8190 51d79c00fe4bc4996ea27fc554d3b3cc {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.MethArray.Red.T C3N-01649 CCRCC Methylation_Array tumor CPT0088630009 202234380050_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 22fd25de-69b9-4df6-90a2-439eac4cb79b bd750861fb5e29b0ecacdee5b9fc99cb {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor"} -C3N-01649.miRNA-Seq.A.hg38 C3N-01649 CCRCC miRNA-Seq tissue_normal CPT0088640006 8dd24a37-784a-4eac-a697-03500ee819ac_mirnaseq_gdc_realn.bam 221222755 BAM harmonized CPTAC3 e4e06d94-4fb0-45ed-81c7-ef0d1a90afaf 20bf35a8b25fb1f9e3ba2444e02405bb {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.miRNA-Seq.S12_L005_R1.A C3N-01649 CCRCC miRNA-Seq tissue_normal CPT0088640006 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L005_R1_001.unaln.bam 192926944 BAM S12_L005_R1 unaligned CPTAC3 eb5ea772-0719-4d3a-b0ec-30f79bb33eb6 a37bd45909a5cf0e28645c0d4847c2fc {"aliquot_tag": "ALQ_3277eaf7", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.miRNA-Seq.S30_L008_R1.T C3N-01649 CCRCC miRNA-Seq tumor CPT0088630006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAGATC_S30_L008_R1_001.unaln.bam 280262748 BAM S30_L008_R1 unaligned CPTAC3 3e180b47-0d0e-446f-b752-b93f4ae93043 5310c78feef4737e80ade708df741170 {"aliquot_tag": "ALQ_805736e7", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01649.miRNA-Seq.T.hg38 C3N-01649 CCRCC miRNA-Seq tumor CPT0088630006 117223ec-83d6-49ca-a128-6727c4ba1953_mirnaseq_gdc_realn.bam 306528815 BAM harmonized CPTAC3 758731cd-26a1-4ef5-98f4-fe76027da0e9 f65d329fa0fcc5bf9d26e1ac1990db4b {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor"} -C3N-01649.RNA-Seq.chimeric.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.chimeric.gdc_realn.bam 87264765 BAM chimeric harmonized CPTAC3 5d35fae3-fd52-4002-9403-b560d6b14371 e363c1a62f6b2a7be0248953a0bd5c14 {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.RNA-Seq.chimeric.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.chimeric.gdc_realn.bam 51732305 BAM chimeric harmonized CPTAC3 397d1a29-c691-4174-a9dd-73b22b44fa16 644e5433a7370222504b9bd81d058f2d {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor"} -C3N-01649.RNA-Seq.genomic.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.genomic.gdc_realn.bam 8099689166 BAM genomic harmonized CPTAC3 a97bead8-cdf4-4d5b-9368-9b6da347967c 3ca5b57cd3edb06afa009e31575cced1 {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.RNA-Seq.genomic.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.genomic.gdc_realn.bam 7988536240 BAM genomic harmonized CPTAC3 26f0c8bf-3383-45e9-9435-8b01c9005dfd 92e17939bb6bf3f18dcbe67dd1b9b71b {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor"} -C3N-01649.RNA-Seq.S10_L003_R1.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 4104281655 FASTQ S10_L003_R1 unaligned CPTAC3 244632b6-4344-40a5-a109-1722407dcac7 eaade7d5a3c454ee497ba5e58566be32 {"aliquot_tag": "ALQ_3277eaf7", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.RNA-Seq.S10_L003_R2.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4343477631 FASTQ S10_L003_R2 unaligned CPTAC3 904e8d63-793c-47d7-827d-dd70047ad802 3222a596a7dd8e4d9348ec070f927c91 {"aliquot_tag": "ALQ_3277eaf7", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.RNA-Seq.S13_L004_R1.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R1_001.fastq.gz 4059212713 FASTQ S13_L004_R1 unaligned CPTAC3 54772596-255c-4ee9-8c6d-ada8cd925b89 c685dcd5210dc4131fef0d0402c8229c {"aliquot_tag": "ALQ_805736e7", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01649.RNA-Seq.S13_L004_R2.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4501956761 FASTQ S13_L004_R2 unaligned CPTAC3 2669c684-bde7-49eb-8441-0500102d3b9b 98190d505ad6c8691e8ad0cdf686196a {"aliquot_tag": "ALQ_805736e7", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01649.RNA-Seq.transcriptome.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.transcriptome.gdc_realn.bam 10017547042 BAM transcriptome harmonized CPTAC3 9608561c-63d5-44c4-83eb-0c575b5968a2 6ba4b8d7b48ee030dba6b3abe27d3b8b {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.RNA-Seq.transcriptome.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.transcriptome.gdc_realn.bam 10554330597 BAM transcriptome harmonized CPTAC3 26c75255-cfd8-4c70-bc66-d450a4392463 a7968c35f131ec856c363f1d58b46492 {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor"} -C3N-01649.WGS.A C3N-01649 CCRCC WGS tissue_normal CPT0088640009 CPT0088640009.WholeGenome.RP-1303.bam 59421941243 BAM aligned CPTAC3 4ddd5eff-c02d-47c5-ae99-f3a15e354ea7 4dc750f6163e12aabe0c979364bedbe5 {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.WGS.A.hg38 C3N-01649 CCRCC WGS tissue_normal CPT0088640009 33e1c462-fff2-4bcd-ba25-a3c1ba770079_wgs_gdc_realn.bam 86512012446 BAM harmonized CPTAC3 16d0b7b6-30b7-444d-b55b-429b871faf8d 058e0f601616972cc989c641cd01fc9e {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.WGS.N C3N-01649 CCRCC WGS blood_normal CPT0088680009 CPT0088680009.WholeGenome.RP-1303.bam 61478418412 BAM aligned CPTAC3 112d0a12-754c-44e2-a6bb-d1e2b0de5885 afb1171e1cf74be2de7eec9e5d0fa291 {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal"} -C3N-01649.WGS.N.hg38 C3N-01649 CCRCC WGS blood_normal CPT0088680009 a5ca7e98-11b8-4706-89ce-62af51a2be90_wgs_gdc_realn.bam 90855999099 BAM harmonized CPTAC3 49a06caa-ed92-47e4-87a4-43e380aae269 3c43e333c8537df855e0fca6c407ac2f {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal"} -C3N-01649.WGS.T C3N-01649 CCRCC WGS tumor CPT0088630009 CPT0088630009.WholeGenome.RP-1303.bam 64973149376 BAM aligned CPTAC3 5f85dfc4-9dd1-49c4-814d-5030cfbe0143 f0ed0db457c26868e8752fc19243e1aa {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor"} -C3N-01649.WGS.T.hg38 C3N-01649 CCRCC WGS tumor CPT0088630009 ab86dbf3-c573-4c06-8d7e-174b15794c45_wgs_gdc_realn.bam 96652426081 BAM harmonized CPTAC3 ae581e44-38bc-416a-9f14-b2be69bbee3d 0ac3e9e499127cbcaeb5caf5a8920c1d {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor"} -C3N-01649.WXS.A C3N-01649 CCRCC WXS tissue_normal CPT0088640009 CPT0088640009.WholeExome.RP-1303.bam 35602935263 BAM aligned CPTAC3 c881268c-c1e5-4803-ba10-64f03f3fdced 54ec9311fbea5a1d9314f503545d4728 {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.WXS.A.hg38 C3N-01649 CCRCC WXS tissue_normal CPT0088640009 33e1c462-fff2-4bcd-ba25-a3c1ba770079_wxs_gdc_realn.bam 47837630124 BAM harmonized CPTAC3 ec5d794a-fedc-4fc4-91ce-9fe1eb7af0a8 7490a699781001e7578cd2754ca6014d {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01649.WXS.N C3N-01649 CCRCC WXS blood_normal CPT0088680009 CPT0088680009.WholeExome.RP-1303.bam 29134914773 BAM aligned CPTAC3 9c91aa54-a11b-4316-a8a9-3aa38aa09771 b4ac831ea48b3d81eb2aae1846abd1e4 {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal"} -C3N-01649.WXS.N.hg38 C3N-01649 CCRCC WXS blood_normal CPT0088680009 a5ca7e98-11b8-4706-89ce-62af51a2be90_wxs_gdc_realn.bam 39730112471 BAM harmonized CPTAC3 1b58c4a9-0dc9-4e19-847b-af742866b085 6fced3418388935261204860682f700e {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal"} -C3N-01649.WXS.T C3N-01649 CCRCC WXS tumor CPT0088630009 CPT0088630009.WholeExome.RP-1303.bam 46195067788 BAM aligned CPTAC3 e8e6b393-a65b-43c9-982b-7910b5b55eac d5dee1c63f775ad6f78014e929a58381 {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor"} -C3N-01649.WXS.T.hg38 C3N-01649 CCRCC WXS tumor CPT0088630009 ab86dbf3-c573-4c06-8d7e-174b15794c45_wxs_gdc_realn.bam 62659439442 BAM harmonized CPTAC3 e01248a5-b0fa-464b-bb61-ad81af937ac4 0e7ebde667e95d8f79dd00d63110bf7c {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor"} -C3N-01650.MethArray.Green.A C3N-01650 CCRCC Methylation_Array tissue_normal CPT0380430009 205589730156_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ccdcd2a9-23f6-4e6c-810e-805a8dcbfa0b 4daf7cd79c70e8b19ae0a008fda9a0d3 {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.MethArray.Green.T C3N-01650 CCRCC Methylation_Array tumor CPT0380400009 205549600082_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b1f990f6-f376-403e-9992-b82e7d2f2537 e96c207037038c3510b323f721701580 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor"} -C3N-01650.MethArray.Red.A C3N-01650 CCRCC Methylation_Array tissue_normal CPT0380430009 205589730156_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 a91cd0b8-4229-4260-86fe-d6f2e858c15b edd83ba206698297bf5e2cc9eec032ad {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.MethArray.Red.T C3N-01650 CCRCC Methylation_Array tumor CPT0380400009 205549600082_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 13c0f1aa-1743-497c-abbf-f96639e56391 b1ffbe9cd220d7943cfad7b76f196ef2 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor"} -C3N-01650.miRNA-Seq.A.hg38 C3N-01650 CCRCC miRNA-Seq tissue_normal CPT0380430006 9bfa6638-4622-4f14-9d5e-e7fa1b4d7af2_mirnaseq_gdc_realn.bam 296165335 BAM harmonized CPTAC3 a4242f01-8426-4e71-a125-a899d7dbb213 976f87945d0657947023b0dcdb6680bc {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.miRNA-Seq.S42_L003_R1.A C3N-01650 CCRCC miRNA-Seq tissue_normal CPT0380430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAGATC_S42_L003_R1_001.unaln.bam 267693918 BAM S42_L003_R1 unaligned CPTAC3 f9c37abd-50cf-4075-a71e-a45b42f24f06 fa59fabe7d4e3384e901676d89923602 {"aliquot_tag": "ALQ_c7fde54e", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.miRNA-Seq.S45_L003_R1.T C3N-01650 CCRCC miRNA-Seq tumor CPT0380400006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GCCAAT_S45_L003_R1_001.unaln.bam 304111463 BAM S45_L003_R1 unaligned CPTAC3 08be98f6-956e-460e-891c-919092233557 9a2e3dbd24833c649a0bc8e83d9cd234 {"aliquot_tag": "ALQ_805d9f9e", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01650.miRNA-Seq.T.hg38 C3N-01650 CCRCC miRNA-Seq tumor CPT0380400006 6f2065ab-0168-43ea-b54e-3fa1b5fdf165_mirnaseq_gdc_realn.bam 333061547 BAM harmonized CPTAC3 7abf3a33-5078-49ac-91f3-e68c9ec1be49 232816d200631564b29ee0c435a94f96 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor"} -C3N-01650.REP_b9c58330.WGS.N C3N-01650 CCRCC WGS blood_normal CPT0405290002 CPT0405290002.WholeGenome.RP-2158.bam 30822501470 BAM aligned CPTAC3 dd1e8570-14d4-4844-9d12-686e060081e1 fdae4acfe4e0b40692a17149f77806d4 {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01650.REP_b9c58330.WGS.N.hg38 C3N-01650 CCRCC WGS blood_normal CPT0405290002 8cac4a04-a819-4b46-9a3f-6c5253adfead_wgs_gdc_realn.bam 92130625198 BAM harmonized CPTAC3 bb22ed95-d227-4799-b7fa-a89ba5e14e6a f78fc93daaf07b344924b92241033926 {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01650.REP_b9c58330.WXS.N C3N-01650 CCRCC WXS blood_normal CPT0405290002 CPT0405290002.WholeExome.RP-1303.bam 24270791634 BAM aligned CPTAC3 25a8f704-b312-4ffe-98cb-0f01a1e82a99 41d557b2410d8d37c9cbbf36e27b593a {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01650.REP_b9c58330.WXS.N.hg38 C3N-01650 CCRCC WXS blood_normal CPT0405290002 8cac4a04-a819-4b46-9a3f-6c5253adfead_wxs_gdc_realn.bam 33441333356 BAM harmonized CPTAC3 3746b654-54f1-4e28-a9a8-c90efb7910fc 9550e93d2156e5e2ce96dcded4a82913 {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-01650.RNA-Seq.chimeric.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.chimeric.gdc_realn.bam 187551074 BAM chimeric harmonized CPTAC3 a4fe1589-770a-4d24-a308-257065152c30 c499574d1a5ddda2704feacd3b02ddaa {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.RNA-Seq.chimeric.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.chimeric.gdc_realn.bam 221351059 BAM chimeric harmonized CPTAC3 4cdb2abe-e810-45ac-b915-543bfe29a209 b604aa9a113f0ae9d1e1b6a314d680b3 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor"} -C3N-01650.RNA-Seq.genomic.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.genomic.gdc_realn.bam 10506503109 BAM genomic harmonized CPTAC3 630e4381-7a26-41bf-aadc-1d52d534261a 713d62d94535b6f49e4eb600eac00b1f {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.RNA-Seq.genomic.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.genomic.gdc_realn.bam 9199312598 BAM genomic harmonized CPTAC3 8dcd0a73-4f87-4cd5-943a-74f9fda3577b 9e1ba7e880c55e60129535fad009c1c9 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor"} -C3N-01650.RNA-Seq.S2_L001_R1.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 5245546118 FASTQ S2_L001_R1 unaligned CPTAC3 e1f86a4f-679d-43c4-808c-52b6b50136fa 4a37afce687375ef0e260c3762c17c0f {"aliquot_tag": "ALQ_c7fde54e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.RNA-Seq.S2_L001_R2.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 5938717101 FASTQ S2_L001_R2 unaligned CPTAC3 740adb26-90b7-4c14-830f-34471fc12d5f 9d0636d2e438a06af69b3127add49b17 {"aliquot_tag": "ALQ_c7fde54e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.RNA-Seq.S3_L001_R1.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 4423994673 FASTQ S3_L001_R1 unaligned CPTAC3 d50b8cfe-8a29-43c2-84d9-33bcb19e5e0b 82755b62bc3ed210ee9b467752b06beb {"aliquot_tag": "ALQ_805d9f9e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01650.RNA-Seq.S3_L001_R2.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 5036629853 FASTQ S3_L001_R2 unaligned CPTAC3 c1ca4303-338e-49b1-b3ef-d1c53ad1e996 554be517a5523bba8576946f1063b17c {"aliquot_tag": "ALQ_805d9f9e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01650.RNA-Seq.transcriptome.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.transcriptome.gdc_realn.bam 12538976935 BAM transcriptome harmonized CPTAC3 62133981-2025-45a4-8704-56ba987e5874 39577cfc312f3de02c62964b60a26cd3 {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.RNA-Seq.transcriptome.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.transcriptome.gdc_realn.bam 12307207647 BAM transcriptome harmonized CPTAC3 c7a8fb43-dae0-4831-8d09-842ff15b93d5 687f0b294d89444375565d6c9cc44245 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor"} -C3N-01650.WGS.T C3N-01650 CCRCC WGS tumor CPT0380400009 CPT0380400009.WholeGenome.RP-2158.bam 33958855932 BAM aligned CPTAC3 b9e32941-e0f1-48ad-9894-f6ede04d846d 5b8f5837718235b37f39134c2050ea76 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor"} -C3N-01650.WGS.T.hg38 C3N-01650 CCRCC WGS tumor CPT0380400009 83d01696-846d-4d55-8727-fe99cace5077_wgs_gdc_realn.bam 102351745528 BAM harmonized CPTAC3 65b7bf65-9bb3-4d0c-a205-24c0be5c0fb1 950a388e50c7ab874a295210114b2dd5 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor"} -C3N-01650.WXS.A C3N-01650 CCRCC WXS tissue_normal CPT0380430009 CPT0380430009.WholeExome.RP-1303.bam 23116301738 BAM aligned CPTAC3 7a5ea787-8b09-4f48-bcac-65c3a6470de8 855d368f3bb8f17984dd62061dec8ac7 {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.WXS.A.hg38 C3N-01650 CCRCC WXS tissue_normal CPT0380430009 36950092-de15-4ece-a714-9bf64a051429_wxs_gdc_realn.bam 31729390305 BAM harmonized CPTAC3 09909ee0-682d-4fc3-9b67-bb6192bc3a6b 53128ab9db592bb42bc7ac9260e85198 {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01650.WXS.T C3N-01650 CCRCC WXS tumor CPT0380400009 CPT0380400009.WholeExome.RP-1303.bam 21551619374 BAM aligned CPTAC3 ef003874-6376-4fd6-9d77-e5bb1c84d150 22e100a4a18d043aa5b171ec8ed570b6 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor"} -C3N-01650.WXS.T.hg38 C3N-01650 CCRCC WXS tumor CPT0380400009 83d01696-846d-4d55-8727-fe99cace5077_wxs_gdc_realn.bam 29826762816 BAM harmonized CPTAC3 0191f870-6fa3-4dc0-8f2f-a48ae057b813 b5420dcb870c11d0390311e3043a5507 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor"} -C3N-01651.MethArray.Green.A C3N-01651 CCRCC Methylation_Array tissue_normal CPT0088710009 204930640041_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7691f6c2-f580-4c00-a0d6-ffb9c12bc0f7 2ad0dff0e8ed6b07ba7fddaa43df2498 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.MethArray.Green.T C3N-01651 CCRCC Methylation_Array tumor CPT0088690009 202176290145_R05C01_Grn.idat 13676225 IDAT Green NA CPTAC3 4665466b-9645-4728-b73e-ef0d79234982 f559f1cdeaeaa652efb01da728e44296 {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor"} -C3N-01651.MethArray.Red.A C3N-01651 CCRCC Methylation_Array tissue_normal CPT0088710009 204930640041_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 9941cd16-8286-4c6e-9919-47da543f4841 6107865a82786c4051e6f1f3f1c795c2 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.MethArray.Red.T C3N-01651 CCRCC Methylation_Array tumor CPT0088690009 202176290145_R05C01_Red.idat 13676225 IDAT Red NA CPTAC3 8cdd683a-2ce8-4ad7-b5b0-27d480a3e9f9 5399f4f7488703a5db1523ae7d2808be {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor"} -C3N-01651.miRNA-Seq.A.hg38 C3N-01651 CCRCC miRNA-Seq tissue_normal CPT0088710006 f5ef4535-3700-4dd1-b2e3-7460e6bcadab_mirnaseq_gdc_realn.bam 251241582 BAM harmonized CPTAC3 cec029e8-f77b-4a96-af85-1ada21ec736c 3a4a53ea86f1d236f742908d0b2d6fe2 {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.miRNA-Seq.S15_L006_R1.T C3N-01651 CCRCC miRNA-Seq tumor CPT0088690006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L006_R1_001.unaln.bam 185183702 BAM S15_L006_R1 unaligned CPTAC3 37925823-beae-4017-99eb-e3b952e4b9b1 cbbeb1a4d1b096277885608719ae8ef5 {"aliquot_tag": "ALQ_cae72e46", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01651.miRNA-Seq.S31_L002_R1.A C3N-01651 CCRCC miRNA-Seq tissue_normal CPT0088710006 181108_UNC31-K00269_0163_BH23TVBBXY_CACGAT_S31_L002_R1_001.unaln.bam 224711762 BAM S31_L002_R1 unaligned CPTAC3 fd55b689-eb61-4a21-981d-6d1f29954098 df605783dd5eb34dd8a0638ee5894656 {"aliquot_tag": "ALQ_31cbb622", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.miRNA-Seq.T.hg38 C3N-01651 CCRCC miRNA-Seq tumor CPT0088690006 51d0c04a-5324-41dd-abc1-9d1d7b735037_mirnaseq_gdc_realn.bam 206614715 BAM harmonized CPTAC3 c684d1d6-4796-4781-8e09-8d12175d8eb7 2a3d036c34a8b4b40c5d54823c67c32d {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor"} -C3N-01651.RNA-Seq.chimeric.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.chimeric.gdc_realn.bam 55566451 BAM chimeric harmonized CPTAC3 6e3cd892-9b86-467a-91a5-102a1c0257e5 ef2cb4d39a7c8cf66b1e59c481e68bda {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.RNA-Seq.chimeric.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.chimeric.gdc_realn.bam 38473165 BAM chimeric harmonized CPTAC3 759f31e9-0e34-4f98-8e92-9171fa5d5e5b 52165df4eccd53dcea42a3327178e60a {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor"} -C3N-01651.RNA-Seq.genomic.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.genomic.gdc_realn.bam 5696632456 BAM genomic harmonized CPTAC3 95b68166-fd8d-4f44-8b24-1c80a0ad30c9 1b835ebe8ad53b573a530d9afa944cae {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.RNA-Seq.genomic.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.genomic.gdc_realn.bam 7965233080 BAM genomic harmonized CPTAC3 2e0ba60b-de5f-4894-a560-136d15f9c382 a14f0160614ad6cfb31bc2bb9910e5f5 {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor"} -C3N-01651.RNA-Seq.S20_L005_R1.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R1_001.fastq.gz 3824566082 FASTQ S20_L005_R1 unaligned CPTAC3 561ecf0d-8c91-42da-801f-1e4ee18dfb1e 632458fd06fc63c95d41373119ec0e31 {"aliquot_tag": "ALQ_cae72e46", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01651.RNA-Seq.S20_L005_R2.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R2_001.fastq.gz 4129283637 FASTQ S20_L005_R2 unaligned CPTAC3 0df3e0d9-4773-48d7-833b-e21828efec13 dc573641d2b4fb78ac8294a71ddef0f4 {"aliquot_tag": "ALQ_cae72e46", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01651.RNA-Seq.S6_L008_R1.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R1_001.fastq.gz 2920856846 FASTQ S6_L008_R1 unaligned CPTAC3 544230d7-1e21-48c7-a50a-63a7325a5ee7 83d1163475edc4cb26abf2b587a85726 {"aliquot_tag": "ALQ_31cbb622", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.RNA-Seq.S6_L008_R2.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R2_001.fastq.gz 3114725417 FASTQ S6_L008_R2 unaligned CPTAC3 b76c5d05-3176-4844-bb1d-23f6274a8d6e 86b650a17ab7626e88f951b640c369e8 {"aliquot_tag": "ALQ_31cbb622", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.RNA-Seq.transcriptome.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.transcriptome.gdc_realn.bam 7172929753 BAM transcriptome harmonized CPTAC3 d70b95a5-c209-400f-ad72-adb18aa1f7d9 4693ce21ea12ca3d703252725e665b13 {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.RNA-Seq.transcriptome.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.transcriptome.gdc_realn.bam 10824996041 BAM transcriptome harmonized CPTAC3 d8f7350b-3b18-4bbd-bf69-55bce4db41ab 7ea3f2f51ba999ba9f36562ba7b4e1bc {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor"} -C3N-01651.WGS.A C3N-01651 CCRCC WGS tissue_normal CPT0088710009 CPT0088710009.WholeGenome.RP-1303.bam 54319081040 BAM aligned CPTAC3 a3e54617-25f9-4563-bfcb-aeb65ab5c885 339fc010ca89481135c6e92c7ec4b52f {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.WGS.A.hg38 C3N-01651 CCRCC WGS tissue_normal CPT0088710009 3e7a7d63-b88d-44b2-8580-0b860022b87e_wgs_gdc_realn.bam 80175507589 BAM harmonized CPTAC3 b5ffbad8-e18f-4a0d-95ff-ae6fe95e072d 5e6f4b0e37ae088e17df3e0c451da370 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.WGS.N C3N-01651 CCRCC WGS blood_normal CPT0088750002 CPT0088750002.WholeGenome.RP-1303.bam 74558215035 BAM aligned CPTAC3 34b8fb40-947c-477d-8f71-ef40fbb522e6 78a04b418f392658532856de79dba4e5 {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01651.WGS.N.hg38 C3N-01651 CCRCC WGS blood_normal CPT0088750002 31732a1d-3a09-4d65-87ce-cf4a7e928909_gdc_realn.bam 113075757608 BAM harmonized CPTAC3 ac1a3515-d536-4d2c-a6d4-fdf24045da76 0eb4ea7dd9647840dd939c9997daf48d {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01651.WGS.T C3N-01651 CCRCC WGS tumor CPT0088690009 CPT0088690009.WholeGenome.RP-1303.bam 57600727599 BAM aligned CPTAC3 3522a83c-34dc-4387-9628-eb4767a24cc5 99b04e7e84acaf0ee9566e2321261092 {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor"} -C3N-01651.WGS.T.hg38 C3N-01651 CCRCC WGS tumor CPT0088690009 a5c7bfd1-43cf-4e91-b10a-7598ebd4345e_gdc_realn.bam 86595257571 BAM harmonized CPTAC3 66120515-c1cc-49fc-9764-2548e27ead6e 984a2fc7adeb358fdf91404ac435498c {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor"} -C3N-01651.WXS.A C3N-01651 CCRCC WXS tissue_normal CPT0088710009 CPT0088710009.WholeExome.RP-1303.bam 38436561557 BAM aligned CPTAC3 2cd8566f-d069-4e4e-8fa1-4732a10086cb b6cddd9df6a8920effdfe5e537e486a8 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.WXS.A.hg38 C3N-01651 CCRCC WXS tissue_normal CPT0088710009 3e7a7d63-b88d-44b2-8580-0b860022b87e_wxs_gdc_realn.bam 51810703953 BAM harmonized CPTAC3 68bb7588-c46b-4dca-a436-834a76fabcec 0524aee6423a50347e4f6c2ccb4d06df {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01651.WXS.N C3N-01651 CCRCC WXS blood_normal CPT0088750002 CPT0088750002.WholeExome.RP-1303.bam 30122260329 BAM aligned CPTAC3 a49c73a9-a512-4987-9f0f-bb1b0721a2f2 ff5bb3364bbb6618f610f58be9b2a0e8 {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01651.WXS.N.hg38 C3N-01651 CCRCC WXS blood_normal CPT0088750002 31732a1d-3a09-4d65-87ce-cf4a7e928909_gdc_realn.bam 40526111145 BAM harmonized CPTAC3 2c2397ce-5c4f-4399-b1ab-0d3b936ae43b 36b00a5319cbdfc388e2273979193f66 {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-01651.WXS.T C3N-01651 CCRCC WXS tumor CPT0088690009 CPT0088690009.WholeExome.RP-1303.bam 28704959722 BAM aligned CPTAC3 5899f065-16de-4efe-9e59-9c75825e1ddc a2b4c4c83043795cc9d3b1a7aa46ee79 {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor"} -C3N-01651.WXS.T.hg38 C3N-01651 CCRCC WXS tumor CPT0088690009 a5c7bfd1-43cf-4e91-b10a-7598ebd4345e_gdc_realn.bam 39691868519 BAM harmonized CPTAC3 3f709912-5a0d-466e-bd8e-dba791b2c7d4 5f988f562292644ab37d98a42fb43a3c {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor"} -C3N-01652.MethArray.Green.A C3N-01652 CCRCC Methylation_Array tissue_normal CPT0380700009 205555390118_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 87cc9931-8630-42ed-9d8d-ce001aea59c7 6a08b701351ba25c8b85d573bcf2d0d2 {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.MethArray.Green.T C3N-01652 CCRCC Methylation_Array tumor CPT0380690009 205555390118_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 73e0c2fc-2f3d-40ef-bf4c-bab8f77e845b 65cce39a09d4f3b1d5e4239f0c217adb {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor"} -C3N-01652.MethArray.Red.A C3N-01652 CCRCC Methylation_Array tissue_normal CPT0380700009 205555390118_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 d133a053-060d-49ad-9faa-5f3fd0634e9b 6f4ebe6e884ff83cf977a41f8f0feba9 {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.MethArray.Red.T C3N-01652 CCRCC Methylation_Array tumor CPT0380690009 205555390118_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 f93346c3-e7c4-434e-ad63-ff497c6e5021 c61d2aafc8c26f3f56b41f7ce2bfd994 {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor"} -C3N-01652.miRNA-Seq.A.hg38 C3N-01652 CCRCC miRNA-Seq tissue_normal CPT0380700006 e8753f58-bb84-411e-91b0-28f44eabf26f_mirnaseq_gdc_realn.bam 294454593 BAM harmonized CPTAC3 1ac3a087-3ace-42b4-b85a-8699730d804c 8fbf52923658154b2a11398e40a20694 {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.miRNA-Seq.S40_L003_R1.T C3N-01652 CCRCC miRNA-Seq tumor CPT0380690006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACTTGA_S40_L003_R1_001.unaln.bam 268565396 BAM S40_L003_R1 unaligned CPTAC3 18fa473e-bae5-4fa2-84fe-b8a8337f8994 6445547f37ce6d06f73e5815e8e49c6b {"aliquot_tag": "ALQ_c0855ce4", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01652.miRNA-Seq.S44_L003_R1.A C3N-01652 CCRCC miRNA-Seq tissue_normal CPT0380700006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GATCAG_S44_L003_R1_001.unaln.bam 274601028 BAM S44_L003_R1 unaligned CPTAC3 6ab93104-2f6b-4071-a88c-b2c9e2a349ae c774a905e51f4c7c45a911f62bd95501 {"aliquot_tag": "ALQ_6c9ed30", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.miRNA-Seq.T.hg38 C3N-01652 CCRCC miRNA-Seq tumor CPT0380690006 a74b4047-1d96-4ac9-aa1e-dbe81e713ff7_mirnaseq_gdc_realn.bam 282587361 BAM harmonized CPTAC3 6f2908a8-b28a-4d97-a8d7-767533805916 85ad5f8193be527780964d99dc7d5f2d {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor"} -C3N-01652.RNA-Seq.chimeric.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.chimeric.gdc_realn.bam 366703286 BAM chimeric harmonized CPTAC3 282a4e42-8baa-4d5a-90a1-477cdc41814b d387f80d342e35b2decd7c6e585fa93f {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.RNA-Seq.chimeric.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.chimeric.gdc_realn.bam 146250034 BAM chimeric harmonized CPTAC3 17175688-34bb-49b8-8531-7bc54c76487b 44fd109b1ec424e38c60e8f749831956 {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor"} -C3N-01652.RNA-Seq.genomic.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.genomic.gdc_realn.bam 9435855583 BAM genomic harmonized CPTAC3 6ec7df9c-37aa-4729-8304-9bb478b8fdbb 14039072aa71ac109f4b4872713e801d {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.RNA-Seq.genomic.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.genomic.gdc_realn.bam 7768995947 BAM genomic harmonized CPTAC3 9369b2ff-f7c4-4e67-aece-0a611150e525 9d490d8aa142f10e9b7d3e104dce92bb {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor"} -C3N-01652.RNA-Seq.S25_L007_R1.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 4425954728 FASTQ S25_L007_R1 unaligned CPTAC3 3d182edc-0025-4c5e-a113-ab8f455c5809 653ed7abeb131383d0c03e4c773cad48 {"aliquot_tag": "ALQ_6c9ed30", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.RNA-Seq.S25_L007_R2.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 5069312587 FASTQ S25_L007_R2 unaligned CPTAC3 00ffe329-b3bf-4a6b-9c31-e446cb678e3d f41374c2b9ded4fc8ee2a1a534c2d44f {"aliquot_tag": "ALQ_6c9ed30", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.RNA-Seq.S57_L007_R1.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R1_001.fastq.gz 3915278210 FASTQ S57_L007_R1 unaligned CPTAC3 5531d428-ed75-411a-a7cc-860070f0ede6 27332eb0d1bc8d0019e750d68929e690 {"aliquot_tag": "ALQ_c0855ce4", "sample": "S57", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01652.RNA-Seq.S57_L007_R2.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R2_001.fastq.gz 4368979670 FASTQ S57_L007_R2 unaligned CPTAC3 2374872f-af06-41f2-a331-682d4635d9e3 5df810ec68870455e791c37d6846cd2d {"aliquot_tag": "ALQ_c0855ce4", "sample": "S57", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01652.RNA-Seq.transcriptome.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.transcriptome.gdc_realn.bam 11410332152 BAM transcriptome harmonized CPTAC3 07fa5e4f-b1d0-41db-a3d8-62c92bb8dbea fd10a243b747c8f05664a12b3a3a20c2 {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.RNA-Seq.transcriptome.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.transcriptome.gdc_realn.bam 10454749291 BAM transcriptome harmonized CPTAC3 b932defa-0152-4bcd-b1cf-529042d57a30 a5cf5b1e6627d177f59bf73de9a112f5 {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor"} -C3N-01652.WGS.N C3N-01652 CCRCC WGS blood_normal CPT0380810002 CPT0380810002.WholeGenome.RP-2158.bam 21792366946 BAM aligned CPTAC3 bdb9668e-5bae-43eb-95de-eb9680f4beea d301a800e3309183bcfb03816663c9fe {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01652.WGS.N.hg38 C3N-01652 CCRCC WGS blood_normal CPT0380810002 af1f4ba7-d2eb-4086-a06c-3dbc0806194a_wgs_gdc_realn.bam 65581268711 BAM harmonized CPTAC3 972aeb18-fa61-4f48-bbb8-f386ca2c2f57 52f7bf60b0eddfcc6be03f5c861c84b2 {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01652.WGS.T C3N-01652 CCRCC WGS tumor CPT0380690009 CPT0380690009.WholeGenome.RP-2158.bam 27636981463 BAM aligned CPTAC3 ff9ab466-1145-42e6-9400-e8bc46cdce6e 07464e289badaa5b012728f811f9dc91 {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor"} -C3N-01652.WGS.T.hg38 C3N-01652 CCRCC WGS tumor CPT0380690009 64abc2d4-1102-4b31-80e8-5977b0e661f1_wgs_gdc_realn.bam 80611922473 BAM harmonized CPTAC3 2a89a515-249d-41bd-b127-0bee9675317d ae23c5415be8544b8f794ff82327170e {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor"} -C3N-01652.WXS.A C3N-01652 CCRCC WXS tissue_normal CPT0380700009 CPT0380700009.WholeExome.RP-1303.bam 29731885130 BAM aligned CPTAC3 50c47f2a-e051-44a0-a38f-41c167de2c3b 819e6a7e9ff698f3d4c8916467c3110f {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.WXS.A.hg38 C3N-01652 CCRCC WXS tissue_normal CPT0380700009 d654c888-56e8-41e1-8a1a-c3b4067e0504_wxs_gdc_realn.bam 40441398331 BAM harmonized CPTAC3 0c51d4c3-b9c3-439f-b80e-a697f4c88a2a feb24a8c5b995200142d7a1229903b07 {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01652.WXS.N C3N-01652 CCRCC WXS blood_normal CPT0380810002 CPT0380810002.WholeExome.RP-1303.bam 22288494034 BAM aligned CPTAC3 d8f8108a-a4cc-4694-adf4-47ea44f9d2da fcdc24145b32a3bf5cfa415f3662a05c {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01652.WXS.N.hg38 C3N-01652 CCRCC WXS blood_normal CPT0380810002 af1f4ba7-d2eb-4086-a06c-3dbc0806194a_wxs_gdc_realn.bam 30717417411 BAM harmonized CPTAC3 16f5b6cb-11a9-419d-a24d-095a783303e1 0ab974c1a423931c67ce09b82142b45d {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01652.WXS.T C3N-01652 CCRCC WXS tumor CPT0380690009 CPT0380690009.WholeExome.RP-1303.bam 24587053584 BAM aligned CPTAC3 4f65e2b6-b95e-4463-95b9-fcfb1f8fc9cb 7a898f21d5ca7ba2c5ff7859b70cac6c {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor"} -C3N-01652.WXS.T.hg38 C3N-01652 CCRCC WXS tumor CPT0380690009 64abc2d4-1102-4b31-80e8-5977b0e661f1_wxs_gdc_realn.bam 33421971477 BAM harmonized CPTAC3 b6c98d23-651d-4748-ba8d-d06de8785fb3 0c419b2e76ae67d79eacf87dccd3a200 {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor"} -C3N-01653.MethArray.Green.A C3N-01653 CCRCC Methylation_Array tissue_normal CPT0380900009 205549600082_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 91b77284-2a3b-429f-b584-f7b00978e0bd f1b18aa3ccf2c96b201ed16d0e7e50f0 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.MethArray.Green.T C3N-01653 CCRCC Methylation_Array tumor CPT0380840009 205549600082_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6609e7f5-1fc4-4c32-b139-0228606f3172 88f420f093a8b3bc23ef5f265ba10a4b {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor"} -C3N-01653.MethArray.Red.A C3N-01653 CCRCC Methylation_Array tissue_normal CPT0380900009 205549600082_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 49b49607-78eb-441d-8cad-3b2fd6ed2ce7 c5291e20f4cc1e1cf1299338b993da22 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.MethArray.Red.T C3N-01653 CCRCC Methylation_Array tumor CPT0380840009 205549600082_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 5d15aa15-ab1b-41e4-84d6-742686cfb849 0fab80235a3815c6fbd525792e38c46e {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor"} -C3N-01653.miRNA-Seq.A.hg38 C3N-01653 CCRCC miRNA-Seq tissue_normal CPT0380900006 70218468-7051-4fb1-9cad-87224510ef8f_mirnaseq_gdc_realn.bam 432308639 BAM harmonized CPTAC3 9b9eaf88-1670-4359-84fb-56cbfbf84250 7a4906aeb79c81c196e9761627d61587 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.miRNA-Seq.S38_L003_R1.T C3N-01653 CCRCC miRNA-Seq tumor CPT0380840006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGGCA_S38_L003_R1_001.unaln.bam 259028873 BAM S38_L003_R1 unaligned CPTAC3 6bc121fb-7b69-440c-aa70-9b5abd011bbe 0ff440183a781ec004a0f3de7c9a379d {"aliquot_tag": "ALQ_21ff925", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01653.miRNA-Seq.S46_L003_R1.A C3N-01653 CCRCC miRNA-Seq tissue_normal CPT0380900006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAGCTT_S46_L003_R1_001.unaln.bam 400364560 BAM S46_L003_R1 unaligned CPTAC3 d819b735-7ac5-4a76-b6b4-f164b571ca45 5d66d9f1617260a9acd9e61b4fdfb5b0 {"aliquot_tag": "ALQ_3cc38c40", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.miRNA-Seq.T.hg38 C3N-01653 CCRCC miRNA-Seq tumor CPT0380840006 1a4d878d-638c-411b-b3bb-e4215e72ea74_mirnaseq_gdc_realn.bam 275427963 BAM harmonized CPTAC3 e0deee0c-2d07-4339-b69a-bce74787ae1e 54ee03e31eae201b619770b3169a5fb6 {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor"} -C3N-01653.RNA-Seq.chimeric.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.chimeric.gdc_realn.bam 375300742 BAM chimeric harmonized CPTAC3 f766de46-9037-4725-ae1c-fd18f5fe18a4 e3d0881a469f2db4d0182378fc3acf01 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.RNA-Seq.chimeric.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.chimeric.gdc_realn.bam 117070013 BAM chimeric harmonized CPTAC3 356363d8-17da-402e-8e19-6aef5da22f05 e163ed6d53863db5c037f9dbef172068 {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor"} -C3N-01653.RNA-Seq.genomic.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.genomic.gdc_realn.bam 8557466770 BAM genomic harmonized CPTAC3 ea8a0267-83f8-4608-b7c9-83b8d329dacd be6a6bf8eb30aae57328254805de33d3 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.RNA-Seq.genomic.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.genomic.gdc_realn.bam 9129609949 BAM genomic harmonized CPTAC3 21ae86d4-f3b8-495c-bc50-90d2139b55f7 63ace05cedaa3f2d92154703fff87cad {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor"} -C3N-01653.RNA-Seq.S12_L004_R1.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R1_001.fastq.gz 3923074064 FASTQ S12_L004_R1 unaligned CPTAC3 902857fe-3aec-4efe-9d57-52a6f958c99b 757667db4f01203496edc8e40284e723 {"aliquot_tag": "ALQ_21ff925", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01653.RNA-Seq.S12_L004_R2.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R2_001.fastq.gz 4442548416 FASTQ S12_L004_R2 unaligned CPTAC3 24bde46f-b757-4cf0-9304-7c67585ae3cf be0dda444f5dfed5ea7afedf17a9d822 {"aliquot_tag": "ALQ_21ff925", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01653.RNA-Seq.S27_L007_R1.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R1_001.fastq.gz 4043284249 FASTQ S27_L007_R1 unaligned CPTAC3 d0cc77fb-4c6e-401a-adf0-412b06fed88a 83a3a8b06138e9e56b3540f0bb3c363a {"aliquot_tag": "ALQ_3cc38c40", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.RNA-Seq.S27_L007_R2.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R2_001.fastq.gz 4475293053 FASTQ S27_L007_R2 unaligned CPTAC3 f8deea31-7e73-4812-908f-441f2fa0d049 fd0c146ea0f5e7c65a5ccea0be54d589 {"aliquot_tag": "ALQ_3cc38c40", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.RNA-Seq.transcriptome.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.transcriptome.gdc_realn.bam 10847400222 BAM transcriptome harmonized CPTAC3 e680ad37-4aa2-420e-8da7-3bb17e383c76 df22682357319bfe639d3a1f166ad3f6 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.RNA-Seq.transcriptome.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.transcriptome.gdc_realn.bam 10324189325 BAM transcriptome harmonized CPTAC3 2c49a057-b0f8-48a2-8627-2230801f0dd4 fe716823e49d26b9bbe94b7adb2b8b75 {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor"} -C3N-01653.WGS.N C3N-01653 CCRCC WGS blood_normal CPT0381130002 CPT0381130002.WholeGenome.RP-2158.bam 21964602888 BAM aligned CPTAC3 fa6f7227-47fb-4021-a5b1-bd6bf0609a58 94dd47c89d58290b1993e140c3571224 {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01653.WGS.N.hg38 C3N-01653 CCRCC WGS blood_normal CPT0381130002 3c9f66ce-a052-4fa2-afd5-a06204384966_wgs_gdc_realn.bam 67562472880 BAM harmonized CPTAC3 0c10ec57-d991-487e-a8dd-e1c8e283523a 023ba1eee902c171ab6faca9e7a786bf {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01653.WGS.T C3N-01653 CCRCC WGS tumor CPT0380840009 CPT0380840009.WholeGenome.RP-2158.bam 21978851679 BAM aligned CPTAC3 b030e965-57f1-42f9-9f42-50dd021846b3 f5ee5b9a3d6017a4718a9dea9ffaf481 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor"} -C3N-01653.WGS.T.hg38 C3N-01653 CCRCC WGS tumor CPT0380840009 46e8bf14-7fe8-4e65-bc3b-240abc339a22_wgs_gdc_realn.bam 65044295326 BAM harmonized CPTAC3 16f44c1e-7d2c-4d61-9f54-304223b4b494 386406683a27b24fa2cdfc31386926f4 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor"} -C3N-01653.WXS.A C3N-01653 CCRCC WXS tissue_normal CPT0380900009 CPT0380900009.WholeExome.RP-1303.bam 28228402837 BAM aligned CPTAC3 aca49aa4-5799-43d4-a6c5-fc8699de4a44 5752c5390cd89e8a7df28dcbc549f3f5 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.WXS.A.hg38 C3N-01653 CCRCC WXS tissue_normal CPT0380900009 f7bbe607-d108-4d30-ab63-d9e971b8e7c4_wxs_gdc_realn.bam 38893755274 BAM harmonized CPTAC3 0f997161-0e76-46ee-b767-b945f21ad6f8 9b351437c68e0f9f53640188d12688a4 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01653.WXS.N C3N-01653 CCRCC WXS blood_normal CPT0381130002 CPT0381130002.WholeExome.RP-1303.bam 18994403553 BAM aligned CPTAC3 6be8c657-bb1d-456b-968b-99b155b16813 bfab39b65b8dc3a43a08a6b00fe482e1 {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01653.WXS.N.hg38 C3N-01653 CCRCC WXS blood_normal CPT0381130002 3c9f66ce-a052-4fa2-afd5-a06204384966_wxs_gdc_realn.bam 26129084298 BAM harmonized CPTAC3 f9b3d0da-9140-4c68-adf5-63c9a82586cb a84161571bc6ffcb33880090e611c3fa {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal"} -C3N-01653.WXS.T C3N-01653 CCRCC WXS tumor CPT0380840009 CPT0380840009.WholeExome.RP-1303.bam 23958326330 BAM aligned CPTAC3 150673fd-ceaa-47a0-8dcc-fcfa880b50d3 34349b2036ca4a545111fb3910fee967 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor"} -C3N-01653.WXS.T.hg38 C3N-01653 CCRCC WXS tumor CPT0380840009 46e8bf14-7fe8-4e65-bc3b-240abc339a22_wxs_gdc_realn.bam 33063923335 BAM harmonized CPTAC3 d12b030b-3baf-40a4-b751-f0ec2270005e f70f144ceae8b172844ed5a738b31c53 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor"} -C3N-01654.MethArray.Green.A C3N-01654 CCRCC Methylation_Array tissue_normal CPT0121510009 204373100109_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fa45de58-2d12-4fd0-8ded-342e9260a03b c2cf50353acb16311f59a1dae59525b3 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.MethArray.Green.T C3N-01654 CCRCC Methylation_Array tumor CPT0121490006 203220070082_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8e75a127-5381-4d8a-9fb5-cbac1f1f6923 d2cd5f22400befbf4d037b5c77d5a72d {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor"} -C3N-01654.MethArray.Red.A C3N-01654 CCRCC Methylation_Array tissue_normal CPT0121510009 204373100109_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 66ee59f9-1eb8-4dc0-8738-11bc0352fcee 6c532bd2f02f79f173759a3c570f228f {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.MethArray.Red.T C3N-01654 CCRCC Methylation_Array tumor CPT0121490006 203220070082_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 3cb9c4dc-c94c-4f9c-a163-51380315a838 37aa54e6b78f2b5da1e3fe3296d6d7d5 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor"} -C3N-01654.miRNA-Seq.A.hg38 C3N-01654 CCRCC miRNA-Seq tissue_normal CPT0121510006 6d15778d-6e2d-43ba-af66-338d56cbf05b_mirnaseq_gdc_realn.bam 247828017 BAM harmonized CPTAC3 3c74d31c-58c1-48fb-bf7e-c91c9f820401 8b33ca57c4b62d7c9b554d3c475ad254 {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.miRNA-Seq.S32_L005_R1.T C3N-01654 CCRCC miRNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACTCA_S32_L005_R1_001.unaln.bam 265739040 BAM S32_L005_R1 unaligned CPTAC3 17363ef4-7caa-4039-b6ee-b0294c73aec0 a3de494952feb51149d126133d47bba0 {"aliquot_tag": "ALQ_4b3df84", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01654.miRNA-Seq.S46_L005_R1.A C3N-01654 CCRCC miRNA-Seq tissue_normal CPT0121510006 190108_UNC31-K00269_0176_AHYGLVBBXX_TCCCGA_S46_L005_R1_001.unaln.bam 228310493 BAM S46_L005_R1 unaligned CPTAC3 80623ed9-20e1-4414-be70-3f00c6b07350 a61c89722cc9230b05a8f0f32be804d6 {"aliquot_tag": "ALQ_6f205a71", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.miRNA-Seq.T.hg38 C3N-01654 CCRCC miRNA-Seq tumor CPT0121490009 7a638cce-6efc-4173-87d3-c88b47fcec8e_mirnaseq_gdc_realn.bam 289013038 BAM harmonized CPTAC3 910d2dd9-7de3-4802-a8d8-d9ee1da5517c 7b3c0138d11757c4e4994c76f8c183d2 {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor"} -C3N-01654.RNA-Seq.chimeric.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.chimeric.gdc_realn.bam 35166213 BAM chimeric harmonized CPTAC3 c9d00bc8-124b-41c3-b8c5-b4eccab16e96 574c9c855e425cf2fd17729331800671 {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.RNA-Seq.chimeric.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.chimeric.gdc_realn.bam 41991305 BAM chimeric harmonized CPTAC3 e0b4b5e0-73ea-4cef-945a-850646b52829 a89bc7b6b721c1379dbb5bd5db515d4b {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor"} -C3N-01654.RNA-Seq.genomic.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.genomic.gdc_realn.bam 8356002308 BAM genomic harmonized CPTAC3 0bea9a8a-763e-497d-b2c2-9ddcf337aecf 6cdbd17d2c566e25dd2088404ddc9f04 {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.RNA-Seq.genomic.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.genomic.gdc_realn.bam 8963716038 BAM genomic harmonized CPTAC3 c3028a2f-914c-4ec4-8d2c-d121d50529d6 281e13aba7a3a7357295d4b31c5d9674 {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor"} -C3N-01654.RNA-Seq.S12_L003_R1.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4175032929 FASTQ S12_L003_R1 unaligned CPTAC3 127b6bff-8a3f-4776-b233-3b679dffa7b5 fbcf9bcada5c35df67ac4b9644461cf1 {"aliquot_tag": "ALQ_4b3df84", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01654.RNA-Seq.S12_L003_R2.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4387876435 FASTQ S12_L003_R2 unaligned CPTAC3 7fe4eb04-1599-4151-a606-a2556673c539 8818436f40a07ed74f979f7336b2ac5e {"aliquot_tag": "ALQ_4b3df84", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01654.RNA-Seq.S77_L008_R1.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R1_001.fastq.gz 3866145561 FASTQ S77_L008_R1 unaligned CPTAC3 cd9b7976-9552-4d56-8eec-e2aef0bd44d1 d620f6e47d1af59238c587b08be8a4eb {"aliquot_tag": "ALQ_6f205a71", "sample": "S77", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.RNA-Seq.S77_L008_R2.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R2_001.fastq.gz 4020226117 FASTQ S77_L008_R2 unaligned CPTAC3 cddf7d17-0b60-4be0-86db-425a55eb4d70 8ef9f454c8cbb58c6dc50b73fbe439a6 {"aliquot_tag": "ALQ_6f205a71", "sample": "S77", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.RNA-Seq.transcriptome.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.transcriptome.gdc_realn.bam 10221761434 BAM transcriptome harmonized CPTAC3 47c86777-e3cd-4db7-8658-65a68c0ed94e 400ba5cdafb33608c7775663dcd2003c {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.RNA-Seq.transcriptome.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.transcriptome.gdc_realn.bam 11628001101 BAM transcriptome harmonized CPTAC3 ebf0bb1f-5901-4a44-8ce5-0e3e11fda191 db568a0f54a03ac0e7ac8f64c45eb329 {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor"} -C3N-01654.WGS.A C3N-01654 CCRCC WGS tissue_normal CPT0121510009 CPT0121510009.WholeGenome.RP-1303.bam 58378410551 BAM aligned CPTAC3 e09c3be4-a67a-483c-9fd9-a4daa8d3f18b da524fc45cecd4ce43cd71feebef3128 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.WGS.A.hg38 C3N-01654 CCRCC WGS tissue_normal CPT0121510009 b9bee8a6-a804-481e-9e55-f44cad81601e_wgs_gdc_realn.bam 85984140358 BAM harmonized CPTAC3 041bd79f-5db7-42d9-8faa-2d9658fdb4f2 bd377560a9d358eb7c9df510cd6c5380 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.WGS.N C3N-01654 CCRCC WGS blood_normal CPT0121550002 CPT0121550002.WholeGenome.RP-1303.bam 59611997994 BAM aligned CPTAC3 da4aa637-b9e6-4b78-8902-88d7a11826ca ef43de127229b44e1a46e9a1b26e05bc {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01654.WGS.N.hg38 C3N-01654 CCRCC WGS blood_normal CPT0121550002 50f7480c-a254-49ac-9246-58a0b881d7b4_wgs_gdc_realn.bam 85937662656 BAM harmonized CPTAC3 82fed84d-c4ed-44d1-99e6-a4780ac88e41 71082ae979f3a99d6e6632962e42b7e3 {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01654.WGS.T C3N-01654 CCRCC WGS tumor CPT0121490006 CPT0121490006.WholeGenome.RP-1303.bam 61962624747 BAM aligned CPTAC3 9c7b427b-705e-407c-b87f-ec0fd6f825a7 16721e9cfb121bfbbfbe42d3d3dc9993 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor"} -C3N-01654.WGS.T.hg38 C3N-01654 CCRCC WGS tumor CPT0121490006 37913f62-c370-4908-b43a-9d89e283e6f0_wgs_gdc_realn.bam 91881204333 BAM harmonized CPTAC3 58f447e1-210a-4854-a1ed-c325bb378fcf d9903ca035c75600375781e2e829fa65 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor"} -C3N-01654.WXS.A C3N-01654 CCRCC WXS tissue_normal CPT0121510009 CPT0121510009.WholeExome.RP-1303.bam 23701925047 BAM aligned CPTAC3 28faeec1-4274-4708-a8c1-9595d13a8160 3eca2c8d1c370d74e320092a036f965a {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.WXS.A.hg38 C3N-01654 CCRCC WXS tissue_normal CPT0121510009 b9bee8a6-a804-481e-9e55-f44cad81601e_wxs_gdc_realn.bam 33837292716 BAM harmonized CPTAC3 1928bb95-eddb-4a08-ae35-0f6f1ba73a6d 907820f63455cbab90a7cd38800295b7 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01654.WXS.N C3N-01654 CCRCC WXS blood_normal CPT0121550002 CPT0121550002.WholeExome.RP-1303.bam 22358172643 BAM aligned CPTAC3 17bdd89d-cac7-4dec-b5e0-816ef5fb93c3 8a6c1a07ec7884648df6a85238096eba {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01654.WXS.N.hg38 C3N-01654 CCRCC WXS blood_normal CPT0121550002 50f7480c-a254-49ac-9246-58a0b881d7b4_wxs_gdc_realn.bam 30517791344 BAM harmonized CPTAC3 23a9749c-186b-4f2c-a80b-2b1a4cdd65b4 0eab100393ba2ca7cc42ded1c8d66dc5 {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01654.WXS.T C3N-01654 CCRCC WXS tumor CPT0121490006 CPT0121490006.WholeExome.RP-1303.bam 26789780870 BAM aligned CPTAC3 a804084b-706d-4d0e-b1fa-6b1a74891d54 90fc498db0236621195ac77770d0c42f {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor"} -C3N-01654.WXS.T.hg38 C3N-01654 CCRCC WXS tumor CPT0121490006 37913f62-c370-4908-b43a-9d89e283e6f0_wxs_gdc_realn.bam 37669617359 BAM harmonized CPTAC3 28fb97e2-a3d0-4925-af96-5ddc29d8e1b8 c1318fce0d3806a1567765922d8ee941 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor"} -C3N-01655.MethArray.Green.T C3N-01655 CCRCC Methylation_Array tumor CPT0121560005 203219650098_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 fb70e47d-5d2f-4821-aac5-89dcd54c45dd 092093824c48de4e9d7f7d8abe619558 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor"} -C3N-01655.MethArray.Red.T C3N-01655 CCRCC Methylation_Array tumor CPT0121560005 203219650098_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 0dc790f6-e10a-461a-a292-9ad54444cac2 7dd55c9b562ed789a64de7cc604403b0 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor"} -C3N-01655.miRNA-Seq.S33_L005_R1.T C3N-01655 CCRCC miRNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGGCG_S33_L005_R1_001.unaln.bam 147781433 BAM S33_L005_R1 unaligned CPTAC3 3504a4f8-2c02-472e-ad37-2f6f5e1fed7b a3f6494f9811eaf27f999f8c78d8f408 {"aliquot_tag": "ALQ_3ab8ab66", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01655.miRNA-Seq.T.hg38 C3N-01655 CCRCC miRNA-Seq tumor CPT0121560008 f7483494-fd71-42e0-b6aa-613ab9378359_mirnaseq_gdc_realn.bam 162648820 BAM harmonized CPTAC3 9cb2f7a8-cdec-4093-824d-b5d204c33a99 14eb822acac5883d5f2e589c760101fc {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor"} -C3N-01655.RNA-Seq.chimeric.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.chimeric.gdc_realn.bam 129842119 BAM chimeric harmonized CPTAC3 8d2520d9-6ba5-4692-b3a6-796d31fff1eb 6a6e9bfe400be2ef5d7573085e2becda {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor"} -C3N-01655.RNA-Seq.genomic.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.genomic.gdc_realn.bam 7346214897 BAM genomic harmonized CPTAC3 e993201c-7faf-4684-a0a3-c5448cc8266d c7508203259e2d249aecc7c6f5b20adb {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor"} -C3N-01655.RNA-Seq.S15_L004_R1.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R1_001.fastq.gz 3547815785 FASTQ S15_L004_R1 unaligned CPTAC3 5369b163-1443-4083-ac1e-600c06674076 8c5bcb3e019620a1c0c2a03576f2c231 {"aliquot_tag": "ALQ_3ab8ab66", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01655.RNA-Seq.S15_L004_R2.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R2_001.fastq.gz 3671645291 FASTQ S15_L004_R2 unaligned CPTAC3 0fb8225d-2d8b-418b-a40b-4a5179eb7772 92d70969a0f8686f890c98d9b37321bd {"aliquot_tag": "ALQ_3ab8ab66", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01655.RNA-Seq.transcriptome.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.transcriptome.gdc_realn.bam 9698285160 BAM transcriptome harmonized CPTAC3 751858da-5ae8-40d3-93dd-edc66204eaf1 b5f091709e9a26ad6fa0949b4e887ba3 {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor"} -C3N-01655.WGS.N C3N-01655 CCRCC WGS blood_normal CPT0121600002 CPT0121600002.WholeGenome.RP-1303.bam 56046371997 BAM aligned CPTAC3 58f983f0-b884-43f7-a404-d5e62e0dd644 95b13edcb1d1b916e37c5f8fe1e0c57d {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal"} -C3N-01655.WGS.N.hg38 C3N-01655 CCRCC WGS blood_normal CPT0121600002 3c68b082-e933-4f28-a836-5067d8fa29a5_wgs_gdc_realn.bam 82157923684 BAM harmonized CPTAC3 601084fe-10cb-4d69-a2fd-3aa4e4205d20 8f3997f7d9718b2ce8a44c5c1d853132 {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal"} -C3N-01655.WGS.T C3N-01655 CCRCC WGS tumor CPT0121560005 CPT0121560005.WholeGenome.RP-1303.bam 65582085835 BAM aligned CPTAC3 e3e4a29c-9721-4cd6-a84a-c6e0e76c445b 78dd6ac2c1456722fd49c5a5f06659bc {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor"} -C3N-01655.WGS.T.hg38 C3N-01655 CCRCC WGS tumor CPT0121560005 67021831-e13b-4ad2-b188-61ba9abdca45_wgs_gdc_realn.bam 96725368747 BAM harmonized CPTAC3 065ca41d-1262-4938-88ec-96379530619e c93c56341f54efecf2abf63a0977db03 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor"} -C3N-01655.WXS.N C3N-01655 CCRCC WXS blood_normal CPT0121600002 CPT0121600002.WholeExome.RP-1303.bam 26589117568 BAM aligned CPTAC3 b2938685-3fae-4bbd-95b6-03aa72c61f09 8109d3b94fe3c36e67675ccf27c11f98 {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal"} -C3N-01655.WXS.N.hg38 C3N-01655 CCRCC WXS blood_normal CPT0121600002 3c68b082-e933-4f28-a836-5067d8fa29a5_wxs_gdc_realn.bam 36672405223 BAM harmonized CPTAC3 ed463fd3-6f99-468f-a772-a6550026ec82 411f508e0fa6675b1507d92c80ff19c2 {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal"} -C3N-01655.WXS.T C3N-01655 CCRCC WXS tumor CPT0121560005 CPT0121560005.WholeExome.RP-1303.bam 17889161967 BAM aligned CPTAC3 381f99fc-e37e-46d7-82e6-febb0c0e79cd 71384b89ac9a1423285ef5916fcb0160 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor"} -C3N-01655.WXS.T.hg38 C3N-01655 CCRCC WXS tumor CPT0121560005 67021831-e13b-4ad2-b188-61ba9abdca45_wxs_gdc_realn.bam 24941228402 BAM harmonized CPTAC3 3347a14d-e1ed-4fcf-b4bd-5d31246a412a 643266524b7bc660f5410d724b83f881 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor"} -C3N-01656.MethArray.Green.A C3N-01656 CCRCC Methylation_Array tissue_normal CPT0161930006 204373100047_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 18d0a3f5-b36c-47a9-906f-3adf5e062809 b935acb5edcd5a243ee0c18efd447d33 {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.MethArray.Green.T C3N-01656 CCRCC Methylation_Array tumor CPT0121610006 203219650177_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 202145b9-8a90-413c-9c83-4381aa283d14 4073969957f2bf1d88a4454f2593740c {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor"} -C3N-01656.MethArray.Red.A C3N-01656 CCRCC Methylation_Array tissue_normal CPT0161930006 204373100047_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 6c02452d-fbde-407c-ac51-9d65bb055ada 54456d61c79ea7491b4aa154cdba5c90 {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.MethArray.Red.T C3N-01656 CCRCC Methylation_Array tumor CPT0121610006 203219650177_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 e3545f0a-d6c9-48e5-afe9-1f39b9ec35c9 4e3ce4e5e487f1f4561c0aaf66befeaa {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor"} -C3N-01656.miRNA-Seq.A.hg38 C3N-01656 CCRCC miRNA-Seq tissue_normal CPT0161930009 bf9a2e7f-1bf4-4c24-8da8-a1b6229cfd23_mirnaseq_gdc_realn.bam 259395079 BAM harmonized CPTAC3 46fac139-192a-4c36-8b7e-0481ac8cfa18 33c0020ebd8422330b7bffa566e6f577 {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.miRNA-Seq.S14_L002_R1.A C3N-01656 CCRCC miRNA-Seq tissue_normal CPT0161930009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L002_R1_001.unaln.bam 237311959 BAM S14_L002_R1 unaligned CPTAC3 58af27a7-a53f-404a-aae1-b10398e4bdef 515a7185d03c614352255a05593a5adc {"aliquot_tag": "ALQ_76d7da01", "sample": "S14", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.miRNA-Seq.S34_L005_R1.T C3N-01656 CCRCC miRNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0176_AHYGLVBBXX_CATGGC_S34_L005_R1_001.unaln.bam 155301568 BAM S34_L005_R1 unaligned CPTAC3 17de96f8-2b23-4111-a940-cc26b988d46a 2e316890cf46456bfe614e597ed9381d {"aliquot_tag": "ALQ_790b354e", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01656.miRNA-Seq.T.hg38 C3N-01656 CCRCC miRNA-Seq tumor CPT0121610009 e4966596-12c3-48b5-8a4b-ba4f9b7e496d_mirnaseq_gdc_realn.bam 165870294 BAM harmonized CPTAC3 fc77c762-b62e-4a82-9fdc-9290398cb5b0 1c01db0de5a60dc6c4a2940d5c51c780 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor"} -C3N-01656.RNA-Seq.chimeric.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.chimeric.gdc_realn.bam 141638868 BAM chimeric harmonized CPTAC3 09b8743c-e7bb-4c57-ade1-b5902bb37f17 d47ab57974b55ce43022d45d4093d3f6 {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.RNA-Seq.chimeric.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.chimeric.gdc_realn.bam 91262345 BAM chimeric harmonized CPTAC3 c1786d8a-4694-4e4d-bbcf-b48a21ffdc01 087b3919b582d07fbc6e7cd8afd9d316 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor"} -C3N-01656.RNA-Seq.genomic.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.genomic.gdc_realn.bam 9013811457 BAM genomic harmonized CPTAC3 743ce654-4039-4c34-845b-3237fda9050d 217297e5c4567bed87453deaa9fc1c9a {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.RNA-Seq.genomic.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.genomic.gdc_realn.bam 8628096850 BAM genomic harmonized CPTAC3 ce8cd2a1-efcc-43d2-a93c-3cbce8d48fb7 49cb4f1a9f8f76e4ca09550ed29c5de3 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor"} -C3N-01656.RNA-Seq.S14_L004_R1.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R1_001.fastq.gz 4270137681 FASTQ S14_L004_R1 unaligned CPTAC3 510055c3-452b-4d66-9a51-9646fbd34c84 dffc36029ea341219b16990c50d9f45a {"aliquot_tag": "ALQ_790b354e", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01656.RNA-Seq.S14_L004_R2.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R2_001.fastq.gz 4421707761 FASTQ S14_L004_R2 unaligned CPTAC3 f49067a5-015e-468d-b0e3-85f583ce5309 bd9a783bd5c00a77268eadd97cbb7dfb {"aliquot_tag": "ALQ_790b354e", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01656.RNA-Seq.S15_L006_R1.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R1_001.fastq.gz 4025035984 FASTQ S15_L006_R1 unaligned CPTAC3 822128c8-b3a2-49dc-9fc8-a002956989b8 fad53830184b67c247d5e4f8b3cbb561 {"aliquot_tag": "ALQ_76d7da01", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.RNA-Seq.S15_L006_R2.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R2_001.fastq.gz 4301438538 FASTQ S15_L006_R2 unaligned CPTAC3 ffe292ba-1d26-4525-825b-44fae0804a9d 61dbaa47f2909c43e574bb3141b5efb0 {"aliquot_tag": "ALQ_76d7da01", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.RNA-Seq.transcriptome.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.transcriptome.gdc_realn.bam 10168996375 BAM transcriptome harmonized CPTAC3 c3a4d7c8-4af9-4afa-8024-ce2f31d807d8 385ec7b8bb1e9ab44dcd276ea949249f {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.RNA-Seq.transcriptome.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.transcriptome.gdc_realn.bam 12014368594 BAM transcriptome harmonized CPTAC3 dbd2f577-527b-4968-9279-350d4276addb e529975b2b074130d09f74424f9000a6 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor"} -C3N-01656.WGS.A C3N-01656 CCRCC WGS tissue_normal CPT0161930006 CPT0161930006.WholeGenome.RP-1303.bam 56061298391 BAM aligned CPTAC3 4dbc1898-85bc-489c-bc0d-0958c651852c f4602651b973eba45be93b180b1162fd {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.WGS.A.hg38 C3N-01656 CCRCC WGS tissue_normal CPT0161930006 055e61ad-20be-4560-97a9-3dc6a412afb9_wgs_gdc_realn.bam 83044201613 BAM harmonized CPTAC3 fd5daeca-04bc-45ea-9af6-8760d5166de0 89e8dc8cc334fe2ae474940155f473cd {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.WGS.N C3N-01656 CCRCC WGS blood_normal CPT0121650002 CPT0121650002.WholeGenome.RP-1303.bam 61230992030 BAM aligned CPTAC3 832f9d37-3696-4018-8864-f9fe2237203a 7fa64acc5a088ae9933d28956d7d8ef1 {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal"} -C3N-01656.WGS.N.hg38 C3N-01656 CCRCC WGS blood_normal CPT0121650002 01c956b1-a093-441f-8a89-0bd98eca36d3_wgs_gdc_realn.bam 90571276632 BAM harmonized CPTAC3 3660c9fc-05a8-472d-89b0-d8a4fd9222ee 9bb1e5b6475b3ddf8b73f26675ad677d {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal"} -C3N-01656.WGS.T C3N-01656 CCRCC WGS tumor CPT0121610006 CPT0121610006.WholeGenome.RP-1303.bam 61531586295 BAM aligned CPTAC3 e7302081-8c76-4f51-96de-6733a4d25ab4 32fbf852a203c134b372e9c4152be480 {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor"} -C3N-01656.WGS.T.hg38 C3N-01656 CCRCC WGS tumor CPT0121610006 e8c9f364-ac02-47cf-a61a-5063fd26e241_wgs_gdc_realn.bam 90616133822 BAM harmonized CPTAC3 896a8da6-d0f0-43a5-b86e-fbfa46fb7f16 ff8d1c12369872eb527d9404e8d0135f {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor"} -C3N-01656.WXS.A C3N-01656 CCRCC WXS tissue_normal CPT0161930006 CPT0161930006.WholeExome.RP-1303.bam 20255377961 BAM aligned CPTAC3 78563955-4997-4639-ae87-b13d67e26d48 4a52c75a0a46824aa0d9bc9d44cf8a57 {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.WXS.A.hg38 C3N-01656 CCRCC WXS tissue_normal CPT0161930006 055e61ad-20be-4560-97a9-3dc6a412afb9_wxs_gdc_realn.bam 27927037427 BAM harmonized CPTAC3 16122671-bd82-474c-b9b0-1c35fd194614 773f04da8dcbca282a644f30d1a29e3f {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01656.WXS.N C3N-01656 CCRCC WXS blood_normal CPT0121650002 CPT0121650002.WholeExome.RP-1303.bam 23313511034 BAM aligned CPTAC3 772ed6c0-947c-4897-bd1e-dfb43dc6816d 31fef537bb41403be6f770e7dae013ea {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal"} -C3N-01656.WXS.N.hg38 C3N-01656 CCRCC WXS blood_normal CPT0121650002 01c956b1-a093-441f-8a89-0bd98eca36d3_wxs_gdc_realn.bam 32354978339 BAM harmonized CPTAC3 cfe204d1-64d6-4ff0-96e7-0c020f71aac6 6a37ca29ceb270abb8d73b61b08a6531 {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal"} -C3N-01656.WXS.T C3N-01656 CCRCC WXS tumor CPT0121610006 CPT0121610006.WholeExome.RP-1303.bam 18454125401 BAM aligned CPTAC3 74aedb25-bedb-4285-b523-7adb18183dbb 40b9ead33edae3d4347695ebf0ddf5ab {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor"} -C3N-01656.WXS.T.hg38 C3N-01656 CCRCC WXS tumor CPT0121610006 e8c9f364-ac02-47cf-a61a-5063fd26e241_wxs_gdc_realn.bam 25835245272 BAM harmonized CPTAC3 7938e798-830b-4277-8c26-335a5c746a47 40685a3e9708aac259d08c084243b213 {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor"} -C3N-01657.MethArray.Green.T C3N-01657 CCRCC Methylation_Array tumor CPT0124170005 203219640172_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 05e3b13f-1c64-4b8b-8d93-b51ce418828a 326fffa9f23ca21d32a15b244e185e5a {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor"} -C3N-01657.MethArray.Red.T C3N-01657 CCRCC Methylation_Array tumor CPT0124170005 203219640172_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 961904da-7190-4ba3-9f97-8e3473d86661 21ee7d0dcd2477174c1300897c1c05d0 {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor"} -C3N-01657.miRNA-Seq.S35_L005_R1.T C3N-01657 CCRCC miRNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0176_AHYGLVBBXX_CATTTT_S35_L005_R1_001.unaln.bam 353015860 BAM S35_L005_R1 unaligned CPTAC3 010d7043-dbf5-4fa7-bf31-02fcded420ab 71ae2dade581d033a6dfc0015ee67ac5 {"aliquot_tag": "ALQ_ce71ef67", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01657.miRNA-Seq.T.hg38 C3N-01657 CCRCC miRNA-Seq tumor CPT0124170008 4d03b1b8-92f4-4765-98b2-5ac2dc205258_mirnaseq_gdc_realn.bam 379654123 BAM harmonized CPTAC3 472b3d68-7266-4efd-80ad-12e914bb790b 25a84bf786a07bbbf7282c21400f5dd0 {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor"} -C3N-01657.RNA-Seq.chimeric.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.chimeric.gdc_realn.bam 131827574 BAM chimeric harmonized CPTAC3 73c4e717-755f-44b9-b90d-c8210ef6f027 a5a595aa77a25b4eca4ad40e80315bb2 {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor"} -C3N-01657.RNA-Seq.genomic.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.genomic.gdc_realn.bam 8618047377 BAM genomic harmonized CPTAC3 5917d135-7f79-4c70-b30f-f19d34f3b15c 996673abbb34e35f17d47220161b0ace {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor"} -C3N-01657.RNA-Seq.S13_L004_R1.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R1_001.fastq.gz 4119197432 FASTQ S13_L004_R1 unaligned CPTAC3 155a088c-a883-4f0f-abe6-4101f436d139 8fd99c69917794c02ed8f27527795be7 {"aliquot_tag": "ALQ_ce71ef67", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01657.RNA-Seq.S13_L004_R2.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R2_001.fastq.gz 4565044949 FASTQ S13_L004_R2 unaligned CPTAC3 924ba030-96b3-4a62-83e8-08586cfc53b9 ab80411de6035cffc3e6cad96cbefd88 {"aliquot_tag": "ALQ_ce71ef67", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01657.RNA-Seq.transcriptome.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.transcriptome.gdc_realn.bam 10428001597 BAM transcriptome harmonized CPTAC3 fef5eba1-b009-4e3a-8211-e347cbfd5d2a 6c500431a9b7d493d7ca1e9abdb222b2 {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor"} -C3N-01657.WGS.N C3N-01657 CCRCC WGS blood_normal CPT0124200002 CPT0124200002.WholeGenome.RP-1303.bam 65915128205 BAM aligned CPTAC3 c4713a54-7351-41be-b5c7-8ab4362c3c06 19049b15a4d790ddf1c70fa58cb83a20 {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01657.WGS.N.hg38 C3N-01657 CCRCC WGS blood_normal CPT0124200002 39cebede-dac2-4854-94b8-0bc773153eb7_wgs_gdc_realn.bam 95665413430 BAM harmonized CPTAC3 c8846750-3b04-40b7-9a56-3fd485a1abba a0645065c4c35aa75835333ae9871eeb {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01657.WGS.T C3N-01657 CCRCC WGS tumor CPT0124170005 CPT0124170005.WholeGenome.RP-1303.bam 58993865903 BAM aligned CPTAC3 f9894393-fcb1-4c85-8f5a-b45c33ee3927 48e4ab38cc938c5f4f9d2f63a21444a5 {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor"} -C3N-01657.WGS.T.hg38 C3N-01657 CCRCC WGS tumor CPT0124170005 f3a8375d-97e8-4217-ba2b-135a8614a951_wgs_gdc_realn.bam 84874531423 BAM harmonized CPTAC3 b9e96c17-520f-40bc-b5e7-b8a8c785db30 c7c300ff34785173903018e0aae7087e {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor"} -C3N-01657.WXS.N C3N-01657 CCRCC WXS blood_normal CPT0124200002 CPT0124200002.WholeExome.RP-1303.bam 33304531895 BAM aligned CPTAC3 b82eda49-8a00-42d0-b182-4e4904d838bd 735ba2946be72c713081ed8d6ee0cbb9 {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01657.WXS.N.hg38 C3N-01657 CCRCC WXS blood_normal CPT0124200002 39cebede-dac2-4854-94b8-0bc773153eb7_wxs_gdc_realn.bam 45573401775 BAM harmonized CPTAC3 d3b31624-471a-4bf6-979c-16d3649401e0 74ffff5f4c23aa53a195a395a8aca84d {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01657.WXS.T C3N-01657 CCRCC WXS tumor CPT0124170005 CPT0124170005.WholeExome.RP-1303.bam 16713325599 BAM aligned CPTAC3 70299922-a0c6-4031-b3d2-1f6c44c307b4 ba50d6d510ce661de7f0f86dd6896911 {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor"} -C3N-01657.WXS.T.hg38 C3N-01657 CCRCC WXS tumor CPT0124170005 f3a8375d-97e8-4217-ba2b-135a8614a951_wxs_gdc_realn.bam 23343802153 BAM harmonized CPTAC3 0f53a373-3411-4268-9d03-94efcdba5cf4 4d81b4d5d1c40a0cf540af8308e6c42b {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor"} -C3N-01714.MethArray.Green.T C3N-01714 PDA Methylation_Array tumor CPT0124360006 203219650156_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 17fdf823-6c1b-4416-8070-0260e3594be0 7106c7cb59194261cd85885357f9cb2e {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor"} -C3N-01714.MethArray.Red.T C3N-01714 PDA Methylation_Array tumor CPT0124360006 203219650156_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 1357534c-3fa4-4e84-96aa-de99f5471291 dfe3357ff2f819c13cd2a4352fc68c2f {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor"} -C3N-01714.miRNA-Seq.S46_L002_R1.T C3N-01714 PDA miRNA-Seq tumor CPT0124360009 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L002_R1_001.unaln.bam 257655218 BAM S46_L002_R1 unaligned CPTAC3 e4084f86-ad01-4c93-a3e4-7a8def3e3d51 6939f4d58b1d688ff07bf30aa9c450bf {"aliquot_tag": "ALQ_c9de574a", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01714.miRNA-Seq.T.hg38 C3N-01714 PDA miRNA-Seq tumor CPT0124360009 03220016-40c4-432e-a999-361c4298ca4d_mirnaseq_gdc_realn.bam 280941647 BAM harmonized CPTAC3 9fb548d8-1c71-412a-a3ec-6f107c666938 491e3d183fe79abdaaa50fbbb46b0bd5 {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor"} -C3N-01714.RNA-Seq.chimeric.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.chimeric.gdc_realn.bam 129855423 BAM chimeric harmonized CPTAC3 da605fb2-3801-4bcd-bda2-e528e28b64d8 dfa6139b8b888cc6b9442db41c9216f6 {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor"} -C3N-01714.RNA-Seq.genomic.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.genomic.gdc_realn.bam 11221803663 BAM genomic harmonized CPTAC3 cad81e4d-05f9-4708-948a-367f9cbaf75c c60ccd35cbbd684fa710342dd9d2c76a {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor"} -C3N-01714.RNA-Seq.S63_L008_R1.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R1_001.fastq.gz 5018991485 FASTQ S63_L008_R1 unaligned CPTAC3 7c110bdf-1f85-4055-8c8f-256e4524c878 686db6904ab9333d71fe1c68c4efe5d6 {"aliquot_tag": "ALQ_c9de574a", "sample": "S63", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01714.RNA-Seq.S63_L008_R2.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R2_001.fastq.gz 5400252665 FASTQ S63_L008_R2 unaligned CPTAC3 286e158d-1caf-43b2-86db-c11e373246b3 07bfd2a493115692152af1ca45e65b1c {"aliquot_tag": "ALQ_c9de574a", "sample": "S63", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01714.RNA-Seq.transcriptome.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.transcriptome.gdc_realn.bam 15695238774 BAM transcriptome harmonized CPTAC3 ec89184a-b5c0-4527-b253-f30b62b17096 0fea3aed5883f6bb286bff97032385e4 {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WGS.N C3N-01714 PDA WGS blood_normal CPT0124390002 CPT0124390002.WholeGenome.RP-1303.bam 66812788025 BAM aligned CPTAC3 b8e48856-8a5e-4e83-a026-3932d3e88c9a 1dd8289d89719cebd5c21919fe412093 {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal"} -C3N-01714.WGS.N.hg38 C3N-01714 PDA WGS blood_normal CPT0124390002 68aee3d6-a976-4077-b5ca-d52924379119_wgs_gdc_realn.bam 97534057770 BAM harmonized CPTAC3 69a0da73-34e1-4644-8221-bc350f908dc2 3f8f89c68edf7386eec07083b3120f04 {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal"} -C3N-01714.WGS.T C3N-01714 PDA WGS tumor CPT0124360006_1 CPT0124360006_1.WholeGenome.RP-1303.bam 138780263727 BAM aligned CPTAC3 b91065ad-4d38-461d-9b90-ddc3b440e7e3 87102876a8704168fa66fa0c911292e6 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WGS.T C3N-01714 PDA WGS tumor CPT0124360006 CPT0124360006.WholeGenome.RP-1303.bam 76985796900 BAM aligned CPTAC3 e0f33ec2-4115-4898-8fc0-5702f3c26c0b 6f5c2c8c0ba80d5d60f6738c1193f220 {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WGS.T.hg38 C3N-01714 PDA WGS tumor CPT0124360006_1 7620b7d8-e9d8-4d01-ae48-ef05eab8aff5_wgs_gdc_realn.bam 204149552535 BAM harmonized CPTAC3 560a127a-04ae-4719-aa8c-99aeec07a7c8 7b92be8b74b3d1244814fb104187ca86 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WGS.T.hg38 C3N-01714 PDA WGS tumor CPT0124360006 9a42f513-8016-4919-b2f9-5417ad2a5b8c_wgs_gdc_realn.bam 113583188925 BAM harmonized CPTAC3 64e569b9-1d34-4e8a-8d5f-19c77432790c 08f239c3d2d7153ac374e107d31ee98b {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WXS.N C3N-01714 PDA WXS blood_normal CPT0124390002 CPT0124390002.WholeExome.RP-1303.bam 29717940712 BAM aligned CPTAC3 6bdf59c9-22ae-4228-a1e2-cc92e38f78d7 f33599448bb1705ae6d7cb1fccf783d4 {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal"} -C3N-01714.WXS.N.hg38 C3N-01714 PDA WXS blood_normal CPT0124390002 68aee3d6-a976-4077-b5ca-d52924379119_wxs_gdc_realn.bam 39981555125 BAM harmonized CPTAC3 3224c0ca-ea97-4b6f-b4b8-1c951bce59a6 cd754d011a61e2dc4bd145e2ba6e8e3f {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal"} -C3N-01714.WXS.T C3N-01714 PDA WXS tumor CPT0124360006_1 CPT0124360006_1.WholeExome.RP-1303.bam 50860141725 BAM aligned CPTAC3 54ee81c2-0e65-4930-8dd8-e301bcc21760 aef1150aee59b249a7cc5cad8b938528 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WXS.T C3N-01714 PDA WXS tumor CPT0124360006 CPT0124360006.WholeExome.RP-1303.bam 27522041242 BAM aligned CPTAC3 cd43f8b0-8d70-47d4-8747-a0c26bdfc512 ccfd6e0f59c4d4c3856ff157cfbfce26 {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WXS.T.hg38 C3N-01714 PDA WXS tumor CPT0124360006_1 7620b7d8-e9d8-4d01-ae48-ef05eab8aff5_wxs_gdc_realn.bam 69934471279 BAM harmonized CPTAC3 f76db08d-45f7-478b-92c5-96823fef6a91 9ce02e15a09d92e9a75c4fb482b86c88 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor"} -C3N-01714.WXS.T.hg38 C3N-01714 PDA WXS tumor CPT0124360006 9a42f513-8016-4919-b2f9-5417ad2a5b8c_wxs_gdc_realn.bam 37357905007 BAM harmonized CPTAC3 4d0ddf01-ae9b-47f8-9e1f-8a78a6ee122f f11a47f7a5a1eba281e657d26135f37d {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor"} -C3N-01715.MethArray.Green.T C3N-01715 PDA Methylation_Array tumor CPT0125090006 203219650100_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4d716f9c-b3df-4ae8-9d08-31060303122a 48e38f180b610b55c9bd141364ffd83e {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor"} -C3N-01715.MethArray.Red.T C3N-01715 PDA Methylation_Array tumor CPT0125090006 203219650100_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 cccc0454-b44b-48a8-a43a-37356f67c1a0 22743eb721f94314b3c8767eb1912e3f {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor"} -C3N-01715.miRNA-Seq.S41_L002_R1.T C3N-01715 PDA miRNA-Seq tumor CPT0125090009 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 220094750 BAM S41_L002_R1 unaligned CPTAC3 176f46d5-c7eb-4a42-8b3f-d85bccff90db aaaeb269e9e140860cc49c403b2b843b {"aliquot_tag": "ALQ_6b6db981", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01715.miRNA-Seq.T.hg38 C3N-01715 PDA miRNA-Seq tumor CPT0125090009 fc387d39-f4ce-44f9-a0ac-47007a2395a9_mirnaseq_gdc_realn.bam 240775400 BAM harmonized CPTAC3 3ea775c3-4d42-4f46-b295-e226831fd770 da97eea45f17314004b78cf372806755 {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor"} -C3N-01715.RNA-Seq.chimeric.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.chimeric.gdc_realn.bam 118198236 BAM chimeric harmonized CPTAC3 0348f441-3a0d-46a6-8609-a2f813934ae9 09e79a87234a0e1c5472c86b026a5545 {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor"} -C3N-01715.RNA-Seq.genomic.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.genomic.gdc_realn.bam 9336964005 BAM genomic harmonized CPTAC3 6c247f11-5438-425b-9fc0-704b04a4641a b3b60dcf8a501024f6b0a4e7ade94822 {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor"} -C3N-01715.RNA-Seq.S4_L001_R1.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R1_001.fastq.gz 4296880977 FASTQ S4_L001_R1 unaligned CPTAC3 50bd8485-e402-4938-b53a-f194d3276492 e9911795a01fa322568b231a39ce96da {"aliquot_tag": "ALQ_6b6db981", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01715.RNA-Seq.S4_L001_R2.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R2_001.fastq.gz 4687243407 FASTQ S4_L001_R2 unaligned CPTAC3 2c7fbfea-a3f3-41a4-b5c4-5ec562ee4597 d186ad70faf9d15eb3e888456c9d23a4 {"aliquot_tag": "ALQ_6b6db981", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01715.RNA-Seq.transcriptome.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.transcriptome.gdc_realn.bam 12743167312 BAM transcriptome harmonized CPTAC3 d0ef368c-8c84-4f14-8070-2b4cdbfa31c8 45e86cb416dc997fb23675678654570a {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WGS.N C3N-01715 PDA WGS blood_normal CPT0125120002 CPT0125120002.WholeGenome.RP-1303.bam 65615184278 BAM aligned CPTAC3 3593027c-2d58-4038-bf3e-9a0fbf882c39 ee11e8ae24efe4929c2e58914c9b5809 {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01715.WGS.N.hg38 C3N-01715 PDA WGS blood_normal CPT0125120002 c59da17d-bed1-4cd9-a587-b069bb2fbd98_wgs_gdc_realn.bam 96955853870 BAM harmonized CPTAC3 ec5efeaa-2203-404e-a995-282e36b57ab8 3bca75ef726e1b353b86d72d964bee1a {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01715.WGS.T C3N-01715 PDA WGS tumor CPT0125090006_1 CPT0125090006_1.WholeGenome.RP-1303.bam 147355279968 BAM aligned CPTAC3 8ab346c7-88a6-4c78-aef2-1ad495a2cf73 48290b83fda5da2f7ec3cf671b81795c {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WGS.T C3N-01715 PDA WGS tumor CPT0125090006 CPT0125090006.WholeGenome.RP-1303.bam 59896773435 BAM aligned CPTAC3 4e75e379-ad63-42e3-9275-e9a87dd33fd0 3814bf867bc88387e0a8fa31043bbfd8 {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WGS.T.hg38 C3N-01715 PDA WGS tumor CPT0125090006_1 46f2d2eb-9dbe-4633-ae7c-f42ff9c953ac_wgs_gdc_realn.bam 216672865152 BAM harmonized CPTAC3 c7606b0b-44aa-487b-978e-104e7459a7fd a34d7a144edb14c95baca80ae432cfc7 {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WGS.T.hg38 C3N-01715 PDA WGS tumor CPT0125090006 2a57792c-4ac1-4f1c-8434-2cd1b684d5f4_wgs_gdc_realn.bam 89120982662 BAM harmonized CPTAC3 1639b8b0-2e89-4f7e-a113-a3aea2fc7f39 8739cb2543d77cfd8a43bd8a38d550ce {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WXS.N C3N-01715 PDA WXS blood_normal CPT0125120002 CPT0125120002.WholeExome.RP-1303.bam 23804312726 BAM aligned CPTAC3 31d88f34-768c-41dd-aca2-22f189b4668f 76322ce739e70f8bcbc26ca164b393c4 {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01715.WXS.N.hg38 C3N-01715 PDA WXS blood_normal CPT0125120002 c59da17d-bed1-4cd9-a587-b069bb2fbd98_wxs_gdc_realn.bam 31759314272 BAM harmonized CPTAC3 a55589ba-d889-40ef-a423-1099c1b8cb1c 80db6048854c2134fae1ffb309d9ea6f {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01715.WXS.T C3N-01715 PDA WXS tumor CPT0125090006_1 CPT0125090006_1.WholeExome.RP-1303.bam 64103845444 BAM aligned CPTAC3 28f369f2-c626-4b72-9a93-b4e85df2e867 ef7ad7a27dee2584f36176daa0885235 {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WXS.T C3N-01715 PDA WXS tumor CPT0125090006 CPT0125090006.WholeExome.RP-1303.bam 29622750870 BAM aligned CPTAC3 0a78296a-afda-4d5b-bdc5-4dec554b09a7 52f4851f22903aeaddae1758d223c3e3 {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WXS.T.hg38 C3N-01715 PDA WXS tumor CPT0125090006_1 46f2d2eb-9dbe-4633-ae7c-f42ff9c953ac_wxs_gdc_realn.bam 87879341992 BAM harmonized CPTAC3 474b180d-fc20-4b5b-959f-9fcd2b0214bb 8e3e34479397c0a26b08799fd6db7eef {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor"} -C3N-01715.WXS.T.hg38 C3N-01715 PDA WXS tumor CPT0125090006 2a57792c-4ac1-4f1c-8434-2cd1b684d5f4_wxs_gdc_realn.bam 40051291662 BAM harmonized CPTAC3 3f4ee05c-bcfe-4084-88ba-36009f372315 af3f150ed24392fe0f8618259ebb7726 {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor"} -C3N-01716.MethArray.Green.T C3N-01716 PDA Methylation_Array tumor CPT0125130006 203027390089_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 96de3bf7-2501-4625-8694-abd6bda17efe bd7e1718b582b7ac5c3fa1ee0eb5a9fa {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor"} -C3N-01716.MethArray.Red.T C3N-01716 PDA Methylation_Array tumor CPT0125130006 203027390089_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 695c6dbe-a4de-4698-a215-59310409b416 f5dfc7e6b5d8e0361248263e34b96516 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor"} -C3N-01716.miRNA-Seq.S6_L001_R1.T C3N-01716 PDA miRNA-Seq tumor CPT0125130009 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L001_R1_001.unaln.bam 209900275 BAM S6_L001_R1 unaligned CPTAC3 84710192-48fa-4293-a887-fef6aa2a07c6 f0d3881f27af83966571257bdff707d3 {"aliquot_tag": "ALQ_ea817285", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01716.miRNA-Seq.T.hg38 C3N-01716 PDA miRNA-Seq tumor CPT0125130009 56c22a82-29ac-4cb9-8db9-062beaf34848_mirnaseq_gdc_realn.bam 229334850 BAM harmonized CPTAC3 f5cbf907-7fd4-4856-9a08-db59c6b8398f eedad6262a9fbd22b52cef4f41def3e5 {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor"} -C3N-01716.RNA-Seq.chimeric.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.chimeric.gdc_realn.bam 130856428 BAM chimeric harmonized CPTAC3 e6cc0533-fcbb-4036-b789-b4c030512d47 0de16c99ba2b53392c6d470496b71c9a {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor"} -C3N-01716.RNA-Seq.genomic.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.genomic.gdc_realn.bam 9344284403 BAM genomic harmonized CPTAC3 f1669bd6-85d6-4ccb-b8b1-3687e002ebb4 2d934450cdcf247b7225f74d4cf837b7 {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor"} -C3N-01716.RNA-Seq.S6_L007_R1.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R1_001.fastq.gz 4089443704 FASTQ S6_L007_R1 unaligned CPTAC3 f7fcf236-ffb2-45eb-a71c-1634ca49b8a9 12e1c9c5fab15b0dc1066db16e87cbea {"aliquot_tag": "ALQ_ea817285", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01716.RNA-Seq.S6_L007_R2.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R2_001.fastq.gz 4568315750 FASTQ S6_L007_R2 unaligned CPTAC3 7be2d14d-5e15-49a8-8ef7-e11a616c790d cd04d21c7dc1d4ae5d83dac0966aa32e {"aliquot_tag": "ALQ_ea817285", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01716.RNA-Seq.transcriptome.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.transcriptome.gdc_realn.bam 12148763635 BAM transcriptome harmonized CPTAC3 22e8dc0f-2c79-44b6-ae7b-8482ad961592 f71e25ad373f72cb8de289f189a78537 {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WGS.N C3N-01716 PDA WGS blood_normal CPT0125150002 CPT0125150002.WholeGenome.RP-1303.bam 64160844121 BAM aligned CPTAC3 4d4009ed-23c5-4946-90db-b78be50f1db7 858bf6ca884b34643d095974012c79f0 {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-01716.WGS.N.hg38 C3N-01716 PDA WGS blood_normal CPT0125150002 d559c9d4-128c-4b40-b6aa-8018c5bab7cd_wgs_gdc_realn.bam 93452990656 BAM harmonized CPTAC3 ec4ca432-3017-4914-9bfd-bba1057bbf8d 3564369b62a92597b60cb635ce68ce6a {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-01716.WGS.T C3N-01716 PDA WGS tumor CPT0125130006_1 CPT0125130006_1.WholeGenome.RP-1303.bam 112984625544 BAM aligned CPTAC3 df1e1ac3-bf16-4319-8145-d7991e95239b e80b435c37d5d857b9ca62496f238fec {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WGS.T C3N-01716 PDA WGS tumor CPT0125130006 CPT0125130006.WholeGenome.RP-1303.bam 62707163531 BAM aligned CPTAC3 dac65ad5-e77b-4e6b-8177-ef9bffc19783 79af179a7c7611e09fc258bedb5a4bd5 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WGS.T.hg38 C3N-01716 PDA WGS tumor CPT0125130006_1 aa7facc3-082f-4c94-aad8-76174a71eb5e_wgs_gdc_realn.bam 163635190398 BAM harmonized CPTAC3 df996520-9904-40f7-a562-1fd56e991b02 450adeabf3c32956248b8fbbfc74f28f {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WGS.T.hg38 C3N-01716 PDA WGS tumor CPT0125130006 6829de66-d838-4535-ad5a-1e4eed9bd1e5_wgs_gdc_realn.bam 91002326575 BAM harmonized CPTAC3 43a85ce0-b201-401e-87a3-f136a62c70a6 f27ca5673b00cb46f367d72a8b673521 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WXS.N C3N-01716 PDA WXS blood_normal CPT0125150002 CPT0125150002.WholeExome.RP-1303.bam 36480917647 BAM aligned CPTAC3 94dfd21c-c576-4dfa-bdc0-b8b8caf08d50 acfdf166244ff36e04df83f7ec616c67 {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-01716.WXS.N.hg38 C3N-01716 PDA WXS blood_normal CPT0125150002 d559c9d4-128c-4b40-b6aa-8018c5bab7cd_wxs_gdc_realn.bam 50628328242 BAM harmonized CPTAC3 fe756545-6479-471f-9901-6c968bae0e38 ab8536a2f6407cb1315f83548f71a97a {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal"} -C3N-01716.WXS.T C3N-01716 PDA WXS tumor CPT0125130006_1 CPT0125130006_1.WholeExome.RP-1303.bam 58999151386 BAM aligned CPTAC3 fad5b903-a31d-46be-a244-e58b951a5322 6406d28e65b0f9efec95ffee46e1f0e6 {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WXS.T C3N-01716 PDA WXS tumor CPT0125130006 CPT0125130006.WholeExome.RP-1303.bam 29020279025 BAM aligned CPTAC3 d6214338-ab13-4d10-a82b-b4797f655d26 e447f18bb3ebe794b97b415eac5c82ac {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WXS.T.hg38 C3N-01716 PDA WXS tumor CPT0125130006_1 aa7facc3-082f-4c94-aad8-76174a71eb5e_wxs_gdc_realn.bam 80258842211 BAM harmonized CPTAC3 c49a9363-b03b-4611-b687-43d3e8dd84cc 81670ac3325834aaf5fce2e65db21040 {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor"} -C3N-01716.WXS.T.hg38 C3N-01716 PDA WXS tumor CPT0125130006 6829de66-d838-4535-ad5a-1e4eed9bd1e5_wxs_gdc_realn.bam 38866251818 BAM harmonized CPTAC3 73aee70d-f568-490b-b5b1-887096902e85 59d4e8620f4729b6026fb59e99336899 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor"} -C3N-01719.MethArray.Green.A C3N-01719 PDA Methylation_Array tissue_normal CPT0125160007 203561620054_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c087c478-9617-4191-ad12-fde079a19307 d90a3380a6d98c0bf4d33b51f370e86e {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.MethArray.Green.T C3N-01719 PDA Methylation_Array tumor CPT0161990008 203561450068_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 381e4082-d07e-4eee-a9a6-f0405d653282 73ceae3b8c9ba82b9b17891755f99741 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor"} -C3N-01719.MethArray.Red.A C3N-01719 PDA Methylation_Array tissue_normal CPT0125160007 203561620054_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 1affd762-3975-4c4a-bab0-8754e36d9f6e bf632d2525d9aa4a27807ed2cf3144c8 {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.MethArray.Red.T C3N-01719 PDA Methylation_Array tumor CPT0161990008 203561450068_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 dd85fe82-e335-46ca-be66-41247f068859 708c6700e9dd189502970b87b69a6fb8 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor"} -C3N-01719.miRNA-Seq.A.hg38 C3N-01719 PDA miRNA-Seq tissue_normal CPT0125160010 eaacb831-eafb-485b-a1ae-1c7acd602af0_mirnaseq_gdc_realn.bam 479096900 BAM harmonized CPTAC3 b5a5eabc-b9ba-4d63-9a23-41f148d61c7a d9411f7911eda733a69e9e14b177fd97 {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.miRNA-Seq.S21_L003_R1.A C3N-01719 PDA miRNA-Seq tissue_normal CPT0125160010 190813_UNC32-K00270_0196_AH5MCWBBXY_CCAACA_S21_L003_R1_001.unaln.bam 430530264 BAM S21_L003_R1 unaligned CPTAC3 6ab439ac-a160-47ce-8f46-e2d556724318 157fb50a64589bae713c76dd55e35f24 {"aliquot_tag": "ALQ_42a67410", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.miRNA-Seq.S47_L005_R1.T C3N-01719 PDA miRNA-Seq tumor CPT0161990011 190712_UNC32-K00270_0192_BH7HL3BBXY_GGTAGC_S47_L005_R1_001.unaln.bam 174581827 BAM S47_L005_R1 unaligned CPTAC3 88c1188a-e039-4870-91c4-42c33c358d64 1d7fb120874c63a2bd7268af4fcde9fa {"aliquot_tag": "ALQ_2ba77bd3", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01719.miRNA-Seq.T.hg38 C3N-01719 PDA miRNA-Seq tumor CPT0161990011 01886ee8-d131-471f-b2ee-551cdb80e6b3_mirnaseq_gdc_realn.bam 194806076 BAM harmonized CPTAC3 0a9da40d-bab3-47ac-bf83-46a8ca1c3496 c6b8bfbfd2a8dabb459856e522459f21 {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor"} -C3N-01719.RNA-Seq.chimeric.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.chimeric.gdc_realn.bam 48898087 BAM chimeric harmonized CPTAC3 44bbf404-8cea-4597-bfa0-21fff2028707 1c8ad1490fa26390389eb69e60bd12ea {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.RNA-Seq.chimeric.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.chimeric.gdc_realn.bam 26467013 BAM chimeric harmonized CPTAC3 f9cdea28-205d-4abf-a77b-eef9b33c1ccf 085851b27aad0078844bb59285e0c42a {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor"} -C3N-01719.RNA-Seq.genomic.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.genomic.gdc_realn.bam 10527188458 BAM genomic harmonized CPTAC3 f28ffe33-c1aa-4562-bbb8-28d58e2ea85a 102dcfdbf9a42267b09613808bc81361 {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.RNA-Seq.genomic.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.genomic.gdc_realn.bam 6925871959 BAM genomic harmonized CPTAC3 40ac005e-2f67-477d-898e-158cd4976fa1 78bab2bde37e5909a1f2df5efe4f93f4 {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor"} -C3N-01719.RNA-Seq.S22_L006_R1.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R1_001.fastq.gz 4871038110 FASTQ S22_L006_R1 unaligned CPTAC3 7fd03820-fc9b-4b52-b9e3-4101e9df0c6f f612fd652c87f1330fa8933bc0d3c94d {"aliquot_tag": "ALQ_42a67410", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.RNA-Seq.S22_L006_R2.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R2_001.fastq.gz 5487729066 FASTQ S22_L006_R2 unaligned CPTAC3 45781656-43b0-4ca4-a6e3-26d7f2872ba7 9ed1ff0c40662b85f3bcac59b5465780 {"aliquot_tag": "ALQ_42a67410", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.RNA-Seq.S9_L003_R1.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R1_001.fastq.gz 3189427831 FASTQ S9_L003_R1 unaligned CPTAC3 d7440a99-7aa5-460e-9b8c-4dbca84af7a8 9b48373571c2b20415765a8521f28f2f {"aliquot_tag": "ALQ_2ba77bd3", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01719.RNA-Seq.S9_L003_R2.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R2_001.fastq.gz 3511679826 FASTQ S9_L003_R2 unaligned CPTAC3 17b70038-d642-4bc9-a9ea-3c94ba247cd0 1a22e1f53f58e10b0bb8e4246ae9b615 {"aliquot_tag": "ALQ_2ba77bd3", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01719.RNA-Seq.transcriptome.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.transcriptome.gdc_realn.bam 13527028690 BAM transcriptome harmonized CPTAC3 def6906a-7923-4830-a7d2-f24b55470667 cdb17b916942260e2484e619d82cfa64 {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.RNA-Seq.transcriptome.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.transcriptome.gdc_realn.bam 8238646320 BAM transcriptome harmonized CPTAC3 9b1c4ae8-b4d0-479d-9bce-ef13632cac62 c8d437d2c0b2b1b76166c17693ca59f7 {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor"} -C3N-01719.WGS.N C3N-01719 PDA WGS blood_normal CPT0125200002 CPT0125200002.WholeGenome.RP-1303.bam 86834854314 BAM aligned CPTAC3 beea60f6-8d50-4d46-a077-c295eb1ca867 48fd130658b13901bb4cce8b1eb3813d {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal"} -C3N-01719.WGS.N.hg38 C3N-01719 PDA WGS blood_normal CPT0125200002 a9cb0d1b-dea9-4440-a945-0a4aa97b6a24_wgs_gdc_realn.bam 127114598944 BAM harmonized CPTAC3 f80ca744-7441-48f8-9761-19b26049e20d b14e6862c0be73409e7ad989913a2337 {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal"} -C3N-01719.WGS.T C3N-01719 PDA WGS tumor CPT0161990008 CPT0161990008.WholeGenome.RP-1303.bam 149898222072 BAM aligned CPTAC3 aecfe902-4ccf-4403-9d48-b4bda4fc0b37 f1fb27518ebe0e586ffdb7b69c7d264b {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor"} -C3N-01719.WGS.T.hg38 C3N-01719 PDA WGS tumor CPT0161990008 bd0b84ec-313f-4a15-9491-cbcb8d97f189_wgs_gdc_realn.bam 220624519863 BAM harmonized CPTAC3 f5fd7522-f3b8-47a9-9a6e-028426acc995 0ff160f2f68bb6d058f944db63086be7 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor"} -C3N-01719.WXS.A C3N-01719 PDA WXS tissue_normal CPT0125160007 CPT0125160007.WholeExome.RP-1303.bam 23938241477 BAM aligned CPTAC3 9d2d951a-57b7-4040-8afd-260728dba266 597e534d54ea5384126b5e0df3c7d73f {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.WXS.A.hg38 C3N-01719 PDA WXS tissue_normal CPT0125160007 85b9f49a-a114-4bdb-aa59-2f57d9117f51_wxs_gdc_realn.bam 32779317022 BAM harmonized CPTAC3 9237880a-f89a-42c1-ab7e-9b4732aad563 88da1d7f8d96b3637c4475eb0cc4d414 {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01719.WXS.N C3N-01719 PDA WXS blood_normal CPT0125200002 CPT0125200002.WholeExome.RP-1303.bam 27241943774 BAM aligned CPTAC3 0e7dca58-c3cf-4a42-963e-1969c7c57c0c 857fd1596d3393d64b5fae2f53851f9c {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal"} -C3N-01719.WXS.N.hg38 C3N-01719 PDA WXS blood_normal CPT0125200002 a9cb0d1b-dea9-4440-a945-0a4aa97b6a24_wxs_gdc_realn.bam 38033151342 BAM harmonized CPTAC3 5de9bb5e-a680-4888-9757-f4fa69f9f585 3ec297ed7487a88a8af62d1ebaf8c049 {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal"} -C3N-01719.WXS.T C3N-01719 PDA WXS tumor CPT0161990008 CPT0161990008.WholeExome.RP-1303.bam 50455480829 BAM aligned CPTAC3 e1c124ef-1e57-4304-ada8-a6f92402eea6 5861c531e4a3bde6cd2906f22dd77835 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor"} -C3N-01719.WXS.T.hg38 C3N-01719 PDA WXS tumor CPT0161990008 bd0b84ec-313f-4a15-9491-cbcb8d97f189_wxs_gdc_realn.bam 69027660694 BAM harmonized CPTAC3 f32add39-bf86-4ee6-8e59-98bea595086e d497ae1bd18e30204af09b1408ae6293 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor"} -C3N-01752.MethArray.Green.T C3N-01752 HNSCC Methylation_Array tumor CPT0162940006 203271750083_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 cee81968-a447-4836-b571-5a2dfd074ea9 9b67ff2f8482190d6b054c7b4162907b {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor"} -C3N-01752.MethArray.Red.T C3N-01752 HNSCC Methylation_Array tumor CPT0162940006 203271750083_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 4b3113d6-a977-4791-a941-9701b00d2b76 fc652cf2bcee4081a03d6ea4181dd473 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor"} -C3N-01752.miRNA-Seq.S21_L001_R1.T C3N-01752 HNSCC miRNA-Seq tumor CPT0162940009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L001_R1_001.unaln.bam 171368662 BAM S21_L001_R1 unaligned CPTAC3 4e14e11b-fcc3-4c79-904a-a5bb603036dd 80b48990c008bbde7aa68097a8c83128 {"aliquot_tag": "ALQ_f51f1c8c", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01752.miRNA-Seq.T.hg38 C3N-01752 HNSCC miRNA-Seq tumor CPT0162940009 4dc7f05e-c4b6-4e17-9370-de3c2a54380f_mirnaseq_gdc_realn.bam 191643961 BAM harmonized CPTAC3 fcb9b00a-8ad6-4fc1-812f-81ad040cd6bb a199bf399cf2ab06e10bd3e9d4ca7c2d {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor"} -C3N-01752.RNA-Seq.chimeric.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.chimeric.gdc_realn.bam 217632269 BAM chimeric harmonized CPTAC3 cc713f7c-4cac-4f7a-89bb-52d6c1a7a09f 3264cedf153212c0eb706574efb01785 {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor"} -C3N-01752.RNA-Seq.genomic.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.genomic.gdc_realn.bam 8561737964 BAM genomic harmonized CPTAC3 5d609718-c470-43ef-b8dd-0286de2c21be 30bd6fa523cef30d2db2939fc664890e {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor"} -C3N-01752.RNA-Seq.S20_L005_R1.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4055071799 FASTQ S20_L005_R1 unaligned CPTAC3 f6ca52a8-000d-43e0-87b2-f7707ab8347b 0c4e47083c1c24e31605875fe092435c {"aliquot_tag": "ALQ_f51f1c8c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01752.RNA-Seq.S20_L005_R2.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4346231843 FASTQ S20_L005_R2 unaligned CPTAC3 edaae8f5-877b-408e-8b20-2b104ac9ddbb 3e583623374650b560a912241ab8cfe8 {"aliquot_tag": "ALQ_f51f1c8c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01752.RNA-Seq.transcriptome.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.transcriptome.gdc_realn.bam 11466253419 BAM transcriptome harmonized CPTAC3 75211923-e05f-4313-8c87-4f334cb7d319 61f1050eb4a690eaea6615f29fd84f56 {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor"} -C3N-01752.WGS.N C3N-01752 HNSCC WGS blood_normal CPT0162970002 CPT0162970002.WholeGenome.RP-1303.bam 67851793377 BAM aligned CPTAC3 8e71c071-5743-4e88-8411-cd479a1c3133 79c74a4551cdb40d3a3ea69a9f39447b {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01752.WGS.N.hg38 C3N-01752 HNSCC WGS blood_normal CPT0162970002 2e8363b7-12e5-40bf-aff4-a47942232f8d_wgs_gdc_realn.bam 101033808844 BAM harmonized CPTAC3 9b125e0c-511d-4fc0-beeb-adf2bc0e1ecf d7ef93642e6f00fa091dc41340f1e654 {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01752.WGS.T C3N-01752 HNSCC WGS tumor CPT0162940006 CPT0162940006.WholeGenome.RP-1303.bam 87748333715 BAM aligned CPTAC3 f0ba9c35-1712-4d1b-8533-8bfa57dd5735 e63a670ef3d7f88ffe20f824e4babedf {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor"} -C3N-01752.WGS.T.hg38 C3N-01752 HNSCC WGS tumor CPT0162940006 4df14fe1-c17a-4e6b-87f0-c446f263ae38_wgs_gdc_realn.bam 128733006630 BAM harmonized CPTAC3 74f34b67-2d31-4aa6-bb6c-34fd90fe1d0e 3283a9bd5111d12924fde3ef8e7145c0 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor"} -C3N-01752.WXS.N C3N-01752 HNSCC WXS blood_normal CPT0162970002 CPT0162970002.WholeExome.RP-1303.bam 23602083271 BAM aligned CPTAC3 c3b2a4a8-d8d2-4bef-8a07-ef61b8a54a78 7e996dd98326ac7e8081be6c053fc678 {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01752.WXS.N.hg38 C3N-01752 HNSCC WXS blood_normal CPT0162970002 2e8363b7-12e5-40bf-aff4-a47942232f8d_wxs_gdc_realn.bam 33069119031 BAM harmonized CPTAC3 a8942d02-b9cd-4d00-ba62-f6dc124402be e01ba8dfecef82bdec002d4d3f01a26d {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01752.WXS.T C3N-01752 HNSCC WXS tumor CPT0162940006 CPT0162940006.WholeExome.RP-1303.bam 20149858408 BAM aligned CPTAC3 6913de03-2b0c-4c9d-b8a2-2cee2668fb83 5983c3d8063873bd61e01b758528bf03 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor"} -C3N-01752.WXS.T.hg38 C3N-01752 HNSCC WXS tumor CPT0162940006 4df14fe1-c17a-4e6b-87f0-c446f263ae38_wxs_gdc_realn.bam 29031821383 BAM harmonized CPTAC3 ea558531-587f-404c-a08e-cbe39c9b03f0 69aec0b05f85fa46a14fbd5cdb1d3179 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor"} -C3N-01754.MethArray.Green.A C3N-01754 HNSCC Methylation_Array tissue_normal CPT0163020006 203271740156_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 fd8259b5-780c-4f73-9d9a-580b4443cde9 a268bb87d75e8fabd4070ff08947bce6 {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.MethArray.Green.T C3N-01754 HNSCC Methylation_Array tumor CPT0162990007 203281980233_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 52d5b189-f590-46a5-83c6-663ede6b13b8 d45d5362055a2d77f44a21a334e3fa35 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.MethArray.Red.A C3N-01754 HNSCC Methylation_Array tissue_normal CPT0163020006 203271740156_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 47015960-95f9-4ddb-9bdd-7fce2d50946e 17fc3645d22d369595cc56436d5f5e8f {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.MethArray.Red.T C3N-01754 HNSCC Methylation_Array tumor CPT0162990007 203281980233_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 17b305bc-75ba-4ad7-87e7-55943eb8eddc 5b8cbc51c6896dc505e722a85036bdeb {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.miRNA-Seq.A.hg38 C3N-01754 HNSCC miRNA-Seq tissue_normal CPT0163020009 b057f690-52ee-4a86-af00-1344904d8404_mirnaseq_gdc_realn.bam 250774515 BAM harmonized CPTAC3 c769f577-7183-4848-b8b2-4bc3e38b8fbc 9027404c1361dfd9654cf2fe57062530 {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.miRNA-Seq.S22_L001_R1.T C3N-01754 HNSCC miRNA-Seq tumor CPT0162990010 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L001_R1_001.unaln.bam 189109293 BAM S22_L001_R1 unaligned CPTAC3 6f601b8f-a42a-48c7-9b2f-296cdb34b915 c6a200ce6e7292ce309fc72e10c64a7b {"aliquot_tag": "ALQ_6d4851d8", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01754.miRNA-Seq.S42_L002_R1.A C3N-01754 HNSCC miRNA-Seq tissue_normal CPT0163020009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L002_R1_001.unaln.bam 215874336 BAM S42_L002_R1 unaligned CPTAC3 c80b514a-5c48-454c-8208-e8471e89d67f aa554a59dd05363734346659c26468ae {"aliquot_tag": "ALQ_fb27b350", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.miRNA-Seq.T.hg38 C3N-01754 HNSCC miRNA-Seq tumor CPT0162990010 a8d10f17-0be5-4947-b08e-d1c47ea5c30b_mirnaseq_gdc_realn.bam 207342619 BAM harmonized CPTAC3 5d56a44a-6ab9-4977-ad82-7d40c39779a9 c2e4282ddca1727a7456494a5d658441 {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.chimeric.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.chimeric.gdc_realn.bam 141759436 BAM chimeric harmonized CPTAC3 02ab9e2a-d1e1-440f-851b-96955aa885ee 207ba061a3c30b2262f09014783e042f {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.RNA-Seq.chimeric.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.chimeric.gdc_realn.bam 182730586 BAM chimeric harmonized CPTAC3 4c130270-5cf6-4cad-bc72-aa0b4caba746 fcf134c12d305d04ac890446898d5de0 {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.chimeric.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.chimeric.gdc_realn.bam 142744166 BAM chimeric harmonized CPTAC3 76d3b48f-b997-43ae-984a-107224b6f9e9 4ae96a67ea9e7449e40e4b77a9b04e61 {"aliquot_tag": "ALQ_9f36d02a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.genomic.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.genomic.gdc_realn.bam 7758351009 BAM genomic harmonized CPTAC3 65bd130c-cb92-4001-8450-6789583a5850 785150c87528f618c6be7525b9ddd9ef {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.RNA-Seq.genomic.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.genomic.gdc_realn.bam 8485660291 BAM genomic harmonized CPTAC3 9bf930d0-d4f8-4f8e-a83a-194e4cd33620 e5ce8686a3e84fe39af6fc59cb3cbebf {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.genomic.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.genomic.gdc_realn.bam 6921450695 BAM genomic harmonized CPTAC3 e07766fc-7035-4282-b47d-aefe9f04c029 bb246e62bfef2231e43230c502457fff {"aliquot_tag": "ALQ_9f36d02a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.S14_L006_R1.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R1_001.fastq.gz 3832460782 FASTQ S14_L006_R1 unaligned CPTAC3 d4cfe46e-ebcc-401f-a98b-739401e778aa 6214a5cc052b99b9057f6e2e290dfcd2 {"aliquot_tag": "ALQ_fb27b350", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.RNA-Seq.S14_L006_R2.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R2_001.fastq.gz 3813959170 FASTQ S14_L006_R2 unaligned CPTAC3 e93a68b4-767b-49b3-b6d8-939cec972089 739fef87eb7a11c78a7ff02560f6d14a {"aliquot_tag": "ALQ_fb27b350", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.RNA-Seq.S22_L006_R1.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R1_001.fastq.gz 3863264626 FASTQ S22_L006_R1 unaligned CPTAC3 af97e771-a0cb-4a7d-896a-66e299b7eac2 b43b2d7eccb2945dfbb9e663d7ceff23 {"aliquot_tag": "ALQ_6d4851d8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.S22_L006_R2.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R2_001.fastq.gz 4289613358 FASTQ S22_L006_R2 unaligned CPTAC3 8b7f9302-5656-4fe6-9a50-4d83225a59f5 22a274eb2884c836742e5b6b116bc7cf {"aliquot_tag": "ALQ_6d4851d8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.S90_R1.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R1_001.fastq.gz 3836235190 FASTQ S90_R1 unaligned CPTAC3 6b2470c7-e0c1-4387-bd3b-87c780218925 645c4f11db003c223ee791fb6a72d708 {"aliquot_tag": "ALQ_9f36d02a", "sample": "S90", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.S90_R2.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R2_001.fastq.gz 3938439570 FASTQ S90_R2 unaligned CPTAC3 36a2c727-a757-4e55-a2f6-da1b0898cdcd 4e11fc4d3690ee8f5fc16ef3f1300017 {"aliquot_tag": "ALQ_9f36d02a", "sample": "S90", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.transcriptome.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.transcriptome.gdc_realn.bam 10282689117 BAM transcriptome harmonized CPTAC3 99561aeb-7d39-40ea-92c1-2e5060c84251 a3833e52a0d6fc49fca7af8df7ffd75a {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.RNA-Seq.transcriptome.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.transcriptome.gdc_realn.bam 11475869023 BAM transcriptome harmonized CPTAC3 176ee300-990a-4cf1-b40e-fc077d1d180e ce706e7c2b5a66f8cb319c18ab548018 {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor"} -C3N-01754.RNA-Seq.transcriptome.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.transcriptome.gdc_realn.bam 3907193336 BAM transcriptome harmonized CPTAC3 f9302afa-b221-4444-83d6-73faae71f927 143d506f7ab4b0e2350b9f3101e28585 {"aliquot_tag": "ALQ_9f36d02a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.WGS.N C3N-01754 HNSCC WGS blood_normal CPT0163080002 CPT0163080002.WholeGenome.RP-1303.bam 68524076907 BAM aligned CPTAC3 5d2d1978-b431-4cae-90bb-0fd8d4973701 2d585e4ad878b6955543b215be5eb753 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal"} -C3N-01754.WGS.N.hg38 C3N-01754 HNSCC WGS blood_normal CPT0163080002 118ac7c7-48cf-4449-b118-2125f7f1981f_wgs_gdc_realn.bam 100652972763 BAM harmonized CPTAC3 c6c9bf4d-09b1-4673-8ab2-e58962ff37e1 db1f8f14e9762407d5c901ede55baa98 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal"} -C3N-01754.WGS.T C3N-01754 HNSCC WGS tumor CPT0162990007 CPT0162990007.WholeGenome.RP-1303.bam 76877530042 BAM aligned CPTAC3 07f00f7c-9d9c-4b4e-a4c3-4c510356310c ef391be7a62b7419e38b55d1cacaf958 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.WGS.T.hg38 C3N-01754 HNSCC WGS tumor CPT0162990007 02c3ef5f-8760-4271-87a0-0a2707052a5a_wgs_gdc_realn.bam 132102313727 BAM harmonized CPTAC3 f507b73d-7c6d-4d7d-b4c4-9b0b24d2bc2b 605f6db36bf308d57d3064211b30c0fe {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.WXS.A C3N-01754 HNSCC WXS tissue_normal CPT0163020006 CPT0163020006.WholeExome.RP-1303.bam 25376240581 BAM aligned CPTAC3 5e4c0a2e-f3e1-4b6f-a542-3c3ee7c5c554 2e303c241cdb2eea93e650f34520b3cc {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.WXS.A.hg38 C3N-01754 HNSCC WXS tissue_normal CPT0163020006 b962e3b3-62fa-4ac9-a9f1-014def117ab3_wxs_gdc_realn.bam 35041166735 BAM harmonized CPTAC3 ac9c50e7-5754-4d0d-8751-1cff95439ec6 b0e79a3199612790068edba25dcdde78 {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01754.WXS.N C3N-01754 HNSCC WXS blood_normal CPT0163080002 CPT0163080002.WholeExome.RP-1303.bam 32215659231 BAM aligned CPTAC3 1d9d358d-d9f6-418b-b575-4f439832d12a dfdf0ffe160b744cc7e5f714dc40cd88 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal"} -C3N-01754.WXS.N.hg38 C3N-01754 HNSCC WXS blood_normal CPT0163080002 118ac7c7-48cf-4449-b118-2125f7f1981f_wxs_gdc_realn.bam 44266731613 BAM harmonized CPTAC3 1f91a385-f3d2-422b-889c-ab6082d61e52 6f4286e3f4321a158131048f268a4be1 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal"} -C3N-01754.WXS.T C3N-01754 HNSCC WXS tumor CPT0162990007 CPT0162990007.WholeExome.RP-1303.bam 17843511054 BAM aligned CPTAC3 98fa6130-45b4-4cdd-8a80-4a68fb0a4216 e7c506548e79fb72f37c011bd3f672b3 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor"} -C3N-01754.WXS.T.hg38 C3N-01754 HNSCC WXS tumor CPT0162990007 02c3ef5f-8760-4271-87a0-0a2707052a5a_wxs_gdc_realn.bam 24369329299 BAM harmonized CPTAC3 31cb964e-73ec-4ca0-a4c2-9ef0f2da419f 1d4e18bbc319f81b2d3569431e9fe133 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor"} -C3N-01755.MethArray.Green.T C3N-01755 HNSCC Methylation_Array tumor CPT0163090006 203273200080_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 5b673dc6-ee15-49c0-84a6-71083657bfbd 7e4eff52d55363d2bcf2a4fba766f1bc {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor"} -C3N-01755.MethArray.Red.T C3N-01755 HNSCC Methylation_Array tumor CPT0163090006 203273200080_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 798ee12d-3c64-437c-a999-af1488aebc5a 46a0ec3d74e8d77d3afe4e557a5322c2 {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor"} -C3N-01755.miRNA-Seq.S23_L001_R1.T C3N-01755 HNSCC miRNA-Seq tumor CPT0163090009 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L001_R1_001.unaln.bam 271792516 BAM S23_L001_R1 unaligned CPTAC3 77b1cbbc-429b-45c8-bc50-7762ef2f9922 f1633c24c8f6a16f0888695c6b09ed07 {"aliquot_tag": "ALQ_8cf78241", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01755.miRNA-Seq.T.hg38 C3N-01755 HNSCC miRNA-Seq tumor CPT0163090009 2a192c9b-07c9-4163-958b-57d3bc3ddbee_mirnaseq_gdc_realn.bam 298822179 BAM harmonized CPTAC3 614e9b9a-cef5-4b25-a09a-3f3ad462b0e7 8a0740b1f50220f6a4d006fbba53c07f {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.chimeric.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.chimeric.gdc_realn.bam 165938350 BAM chimeric harmonized CPTAC3 1230fb10-422d-4076-88cb-964bca063698 ed18288f45ca8bb20af51834d41d9b1f {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.chimeric.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.chimeric.gdc_realn.bam 183814197 BAM chimeric harmonized CPTAC3 5e38cf37-2f23-4d07-9d7d-4d43ceda7c6d 16c969215f854f9507854654c670f4a0 {"aliquot_tag": "ALQ_a256f99a", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.genomic.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.genomic.gdc_realn.bam 11109404070 BAM genomic harmonized CPTAC3 d27f57ed-3113-49ab-822f-e811b1abcec8 bb0a518a001f03c3dc6f066c95e40c72 {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.genomic.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.genomic.gdc_realn.bam 9091441744 BAM genomic harmonized CPTAC3 c0c1afd7-4ab6-4bb9-9a44-d4ff12488872 1e3e4aaf4b1647379c9d0eb6111644f2 {"aliquot_tag": "ALQ_a256f99a", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.S21_L006_R1.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R1_001.fastq.gz 4865120242 FASTQ S21_L006_R1 unaligned CPTAC3 fe2ef44e-d4b5-4119-843d-c7f4047f82ea a743e8147f3807730de8129af6705aaa {"aliquot_tag": "ALQ_8cf78241", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.S21_L006_R2.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R2_001.fastq.gz 5301083450 FASTQ S21_L006_R2 unaligned CPTAC3 fd70ab7f-7652-400a-9222-1d3fec1fc580 164dede06e6e1462b7663a355068312b {"aliquot_tag": "ALQ_8cf78241", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.S61_R1.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R1_001.fastq.gz 5870695173 FASTQ S61_R1 unaligned CPTAC3 175fb4bd-7530-490b-84b6-2e2669256990 67d0da3974f080b750ae122e8c4de96a {"aliquot_tag": "ALQ_a256f99a", "sample": "S61", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.S61_R2.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R2_001.fastq.gz 6017065335 FASTQ S61_R2 unaligned CPTAC3 45d4f121-899e-4877-a7cf-8eb9617a5d05 ad53282e4fd80dc2aa0b2cc8997a52ca {"aliquot_tag": "ALQ_a256f99a", "sample": "S61", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.transcriptome.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.transcriptome.gdc_realn.bam 11160398861 BAM transcriptome harmonized CPTAC3 8f26ef32-2a57-45db-8ca4-ccbf3f0c453d ed1258df52579d196a8ef381b2867a8c {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor"} -C3N-01755.RNA-Seq.transcriptome.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.transcriptome.gdc_realn.bam 4860758086 BAM transcriptome harmonized CPTAC3 7df9b81e-b688-4886-866e-5fb5496c8be6 2232cc93ba3e23ad8de0c1c61c57e641 {"aliquot_tag": "ALQ_a256f99a", "gdc_sample_type": "Primary Tumor"} -C3N-01755.WGS.N C3N-01755 HNSCC WGS blood_normal CPT0163150002 CPT0163150002.WholeGenome.RP-1303.bam 90072258813 BAM aligned CPTAC3 ba76ad94-33d5-47f9-97e8-8d13fb5f0c9b 2af15170c9c0e6abcffb14d07be53d87 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01755.WGS.N.hg38 C3N-01755 HNSCC WGS blood_normal CPT0163150002 ab796511-b5ad-401b-af77-1583a2273bb4_wgs_gdc_realn.bam 131476851643 BAM harmonized CPTAC3 c1331273-78f4-40df-b7d8-55a57bc46e7f 3c42750d1db0f5c16f5507a95a9fc479 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01755.WGS.T C3N-01755 HNSCC WGS tumor CPT0163090006 CPT0163090006.WholeGenome.RP-1303.bam 65888306801 BAM aligned CPTAC3 abe6381e-ea03-4044-9ceb-2b0e6393cfc1 8f02180b50361ba121a4c0e3b43e7e8e {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor"} -C3N-01755.WGS.T.hg38 C3N-01755 HNSCC WGS tumor CPT0163090006 0a44b5eb-c1f8-458a-bf5a-c5b271c33b70_wgs_gdc_realn.bam 96552388545 BAM harmonized CPTAC3 c7d37e41-e5ca-40a8-a9f7-42dffcb67d13 1a2a39bfaef7ea38e3ba5c4ac93fdeb5 {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor"} -C3N-01755.WXS.N C3N-01755 HNSCC WXS blood_normal CPT0163150002 CPT0163150002.WholeExome.RP-1303.bam 46714098338 BAM aligned CPTAC3 939ae555-4d98-4774-977f-94c319b41038 351b26d9c0186691a461100bd39e2c00 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01755.WXS.N.hg38 C3N-01755 HNSCC WXS blood_normal CPT0163150002 ab796511-b5ad-401b-af77-1583a2273bb4_wxs_gdc_realn.bam 64202961090 BAM harmonized CPTAC3 ef05bf82-a1ea-4de3-b4a3-0c01cbb69399 93ccd481b2810ea69f0f2b3a1d6137b0 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01755.WXS.T C3N-01755 HNSCC WXS tumor CPT0163090006 CPT0163090006.WholeExome.RP-1303.bam 23401835796 BAM aligned CPTAC3 1b4b3e6d-0872-4b18-8860-1848ffefb72d b1d9658d566e83e3de0008bf8253e429 {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor"} -C3N-01755.WXS.T.hg38 C3N-01755 HNSCC WXS tumor CPT0163090006 0a44b5eb-c1f8-458a-bf5a-c5b271c33b70_wxs_gdc_realn.bam 31654403378 BAM harmonized CPTAC3 8bce6ee3-599a-4e97-be74-24762ae5db6f 4b1e75f67473cf2231b23f88240ce0ab {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor"} -C3N-01756.MethArray.Green.A C3N-01756 HNSCC Methylation_Array tissue_normal CPT0163170006 203271740101_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e225f4c7-7607-4b38-8e53-0fa0a413fcac 92595565cd0afa370077a87dafd6b023 {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.MethArray.Green.T C3N-01756 HNSCC Methylation_Array tumor CPT0163160006 203220070165_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 711c2bde-708e-402a-a72f-13d603b00731 76cfbef9154d92502b40de4f38026bbb {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor"} -C3N-01756.MethArray.Red.A C3N-01756 HNSCC Methylation_Array tissue_normal CPT0163170006 203271740101_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 6f0b98f8-916f-47f1-8998-3fd12e10acd2 0d106aeec6704f334cdeb4167ee952fc {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.MethArray.Red.T C3N-01756 HNSCC Methylation_Array tumor CPT0163160006 203220070165_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 7c8a2ad8-5938-4e4b-8d37-0e031453b902 54819fa4d23c593283a6b107b3616515 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor"} -C3N-01756.miRNA-Seq.A.hg38 C3N-01756 HNSCC miRNA-Seq tissue_normal CPT0163170009 19e8e372-fb4f-499d-8c88-a2b31e972d8c_mirnaseq_gdc_realn.bam 253991223 BAM harmonized CPTAC3 059a54bd-f339-4d60-be18-cb43885b8c85 8fe9bf37d29a2379db3a4e9739afb525 {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.miRNA-Seq.S140_L007_R1.A C3N-01756 HNSCC miRNA-Seq tissue_normal CPT0163170009 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTCAA_S140_L007_R1_001.unaln.bam 229952112 BAM S140_L007_R1 unaligned CPTAC3 10d2e3e5-cd4f-4d00-b869-aee21d96672d 4216a67ca58ec18008f1cb482469c611 {"aliquot_tag": "ALQ_f89bef85", "sample": "S140", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.miRNA-Seq.S24_L001_R1.T C3N-01756 HNSCC miRNA-Seq tumor CPT0163160009 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L001_R1_001.unaln.bam 229128711 BAM S24_L001_R1 unaligned CPTAC3 838f2435-633a-4f34-acc3-b31a76b12864 644c8eaf2790929ee8ccf5e5e9a91674 {"aliquot_tag": "ALQ_c5fbc635", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01756.miRNA-Seq.T.hg38 C3N-01756 HNSCC miRNA-Seq tumor CPT0163160009 bf05be90-584e-4841-b6e6-68354a29986c_mirnaseq_gdc_realn.bam 248953531 BAM harmonized CPTAC3 768ae306-0785-4c1e-84b0-13e4c5e23e4e 768c39c023ea5ac13d6e55319ea701fe {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.chimeric.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.chimeric.gdc_realn.bam 195183093 BAM chimeric harmonized CPTAC3 fb3a1a34-47d4-41a2-9840-2ac90a0fd0bd 580d652730f5f052d56206e258b0a44e {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.RNA-Seq.chimeric.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.chimeric.gdc_realn.bam 280921252 BAM chimeric harmonized CPTAC3 60cfcc3c-4ea7-4ee5-afd3-3451c3d4fcf1 3ea8b4c4a532de57f446efb35ae7730a {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.chimeric.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.chimeric.gdc_realn.bam 147196934 BAM chimeric harmonized CPTAC3 3c77b208-0aa8-4856-8741-373c50642acb ff98b5bc9248ce803ba89aa33688cdd2 {"aliquot_tag": "ALQ_5ac63d2b", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.genomic.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.genomic.gdc_realn.bam 8148333610 BAM genomic harmonized CPTAC3 8ac56e47-e5cb-464a-8f77-b33e3653f018 76bc5f3863158e3572d0b7d8266d5701 {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.RNA-Seq.genomic.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.genomic.gdc_realn.bam 9380607461 BAM genomic harmonized CPTAC3 64fd9568-ed5f-488a-8cde-ba1778e1ea70 1d727b820ec32474d7feb126cef9959b {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.genomic.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.genomic.gdc_realn.bam 7313736093 BAM genomic harmonized CPTAC3 d087eaf1-bde3-438f-80aa-f1e19f9c669c 630c11ea8dab3b85ee33cb1262285eb9 {"aliquot_tag": "ALQ_5ac63d2b", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.S14_L004_R1.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R1_001.fastq.gz 3885627609 FASTQ S14_L004_R1 unaligned CPTAC3 59dd90d6-bda7-4356-b32f-0c5fc3170509 b753286ec64164f298d9dee9b938e891 {"aliquot_tag": "ALQ_f89bef85", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.RNA-Seq.S14_L004_R2.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R2_001.fastq.gz 4169497735 FASTQ S14_L004_R2 unaligned CPTAC3 eea8501e-e2a6-4ab1-9dec-ff73840d93e5 41650dcd59d5446171cb145721f71e13 {"aliquot_tag": "ALQ_f89bef85", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.RNA-Seq.S24_L006_R1.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R1_001.fastq.gz 4370446501 FASTQ S24_L006_R1 unaligned CPTAC3 67b4e0a3-b9b0-4f36-9f08-6b5a544abfff cebe1d27fdce64414536a9755b726e9b {"aliquot_tag": "ALQ_c5fbc635", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.S24_L006_R2.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R2_001.fastq.gz 4843574665 FASTQ S24_L006_R2 unaligned CPTAC3 68c0adef-b7a8-41b1-8fc7-8939df30763a f04cca1f43f36d9a15137f91c4ca84fa {"aliquot_tag": "ALQ_c5fbc635", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.S45_R1.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R1_001.fastq.gz 4161633442 FASTQ S45_R1 unaligned CPTAC3 4c14151c-9555-4aa9-975e-9652d2429c48 e245541bdad36f7f9f3a42aa2bf0c124 {"aliquot_tag": "ALQ_5ac63d2b", "sample": "S45", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.S45_R2.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R2_001.fastq.gz 4236963203 FASTQ S45_R2 unaligned CPTAC3 31ba4176-8cb7-4442-894c-e9697bd16f21 e7feeaaf531b9e188c7429572e26d4d1 {"aliquot_tag": "ALQ_5ac63d2b", "sample": "S45", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.transcriptome.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.transcriptome.gdc_realn.bam 11200663129 BAM transcriptome harmonized CPTAC3 44adbe9b-c896-4695-ad3b-9c31bdcd13a1 954dda4d65d9056a5bc1b3aca3180288 {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.RNA-Seq.transcriptome.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.transcriptome.gdc_realn.bam 10312504072 BAM transcriptome harmonized CPTAC3 8fd40137-13d6-4fb9-a480-cb1dbfccdd3b e5602b28b217fd3be4b5c00843d0f095 {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor"} -C3N-01756.RNA-Seq.transcriptome.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.transcriptome.gdc_realn.bam 3379953365 BAM transcriptome harmonized CPTAC3 727a5d61-988e-4921-b5ea-c6d36e3be4a3 9d1bb2608e74ff811cdc9ee75c8e69da {"aliquot_tag": "ALQ_5ac63d2b", "gdc_sample_type": "Primary Tumor"} -C3N-01756.WGS.N C3N-01756 HNSCC WGS blood_normal CPT0163200002 CPT0163200002.WholeGenome.RP-1303.bam 64454668952 BAM aligned CPTAC3 99209135-2009-4af2-851a-1d61c139ef6b b19fe999fc0f8007c504f56c0751eaa8 {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01756.WGS.N.hg38 C3N-01756 HNSCC WGS blood_normal CPT0163200002 c77badda-9381-4940-8674-3eda70ed03ea_wgs_gdc_realn.bam 93971907616 BAM harmonized CPTAC3 927aecf9-5464-4e30-bcb2-551179520f5d 7a688ec5ea5ca4e302014c67e1bdcee2 {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01756.WGS.T C3N-01756 HNSCC WGS tumor CPT0163160006 CPT0163160006.WholeGenome.RP-1303.bam 68399522351 BAM aligned CPTAC3 8ef2515f-0df2-4358-98ca-4df8f9f70060 c22d04477ab00868481532da26247b62 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor"} -C3N-01756.WGS.T.hg38 C3N-01756 HNSCC WGS tumor CPT0163160006 abd4cd7f-f9c7-48a8-a1e9-91bdf9c6704c_wgs_gdc_realn.bam 101164426005 BAM harmonized CPTAC3 25c69788-e08d-4a9f-893a-07041682ebe2 aa77e1b478980c4c6bbc62931c964d22 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor"} -C3N-01756.WXS.A C3N-01756 HNSCC WXS tissue_normal CPT0163170006 CPT0163170006.WholeExome.RP-1303.bam 21672904598 BAM aligned CPTAC3 503c7d83-6aa5-4105-9dd6-f09a718b0d2d c91dd9d48cc8d9693afba8255152a320 {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.WXS.A.hg38 C3N-01756 HNSCC WXS tissue_normal CPT0163170006 812fea6a-1e8e-4c8f-b0f2-df82b26fd834_wxs_gdc_realn.bam 30269729084 BAM harmonized CPTAC3 8fc74d81-c8ce-4650-92f2-22a289d42340 a456e06f2657dfa0004c8b10bbabc1cf {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01756.WXS.N C3N-01756 HNSCC WXS blood_normal CPT0163200002 CPT0163200002.WholeExome.RP-1303.bam 24628461042 BAM aligned CPTAC3 098c3f50-5fbe-45b3-a800-14cb292de7d1 26ec6e77237172296f8dca3b1c1ed9ab {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01756.WXS.N.hg38 C3N-01756 HNSCC WXS blood_normal CPT0163200002 c77badda-9381-4940-8674-3eda70ed03ea_wxs_gdc_realn.bam 34170341333 BAM harmonized CPTAC3 90e6f055-e9a4-4727-9bc7-7c7df7e15765 76b3df88b77c62995023782d4cf25dd7 {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01756.WXS.T C3N-01756 HNSCC WXS tumor CPT0163160006 CPT0163160006.WholeExome.RP-1303.bam 25152665330 BAM aligned CPTAC3 6fb1bbaf-7f74-4420-b7ce-e7802493a0ce c34ce0de399df2625b04a8f864e693b8 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor"} -C3N-01756.WXS.T.hg38 C3N-01756 HNSCC WXS tumor CPT0163160006 abd4cd7f-f9c7-48a8-a1e9-91bdf9c6704c_wxs_gdc_realn.bam 35033284952 BAM harmonized CPTAC3 393039c1-e743-452b-bf0a-5a2debab8692 825c32edbe550ff36ea63da8c10d4d7b {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor"} -C3N-01757.MethArray.Green.T C3N-01757 HNSCC Methylation_Array tumor CPT0163240006 203271740101_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 618110c0-327a-429a-866f-b9e884fbb765 70e6fd217cffe45878100623e05f673f {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor"} -C3N-01757.MethArray.Red.T C3N-01757 HNSCC Methylation_Array tumor CPT0163240006 203271740101_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 9c684940-96c8-4018-b063-eb2fd95c9e04 4ef6d9f0925b30175be3c521b92257b7 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor"} -C3N-01757.miRNA-Seq.S25_L002_R1.T C3N-01757 HNSCC miRNA-Seq tumor CPT0163240009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L002_R1_001.unaln.bam 197110833 BAM S25_L002_R1 unaligned CPTAC3 292087bf-acec-4394-9743-7905306bd74a 90b328684e854a52d4482781ba765545 {"aliquot_tag": "ALQ_39afe7fb", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01757.miRNA-Seq.T.hg38 C3N-01757 HNSCC miRNA-Seq tumor CPT0163240009 e648a52b-8fba-4ec3-9a0e-b2a2f6600a60_mirnaseq_gdc_realn.bam 219188978 BAM harmonized CPTAC3 aeb8c092-8874-4f7d-bc06-626f7902510a d2ccd554a1236b877d8f454cd5b5e207 {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor"} -C3N-01757.RNA-Seq.chimeric.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.chimeric.gdc_realn.bam 234479172 BAM chimeric harmonized CPTAC3 fcec5f57-2288-4c9a-980f-c0eb5cafadc6 abffff79d4727c28775ff9c050465349 {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor"} -C3N-01757.RNA-Seq.genomic.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.genomic.gdc_realn.bam 9082605256 BAM genomic harmonized CPTAC3 e21368d2-a54c-4ae9-9064-b54feef82815 63c6615a0e3e7d9b9cd8ac288035518e {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor"} -C3N-01757.RNA-Seq.S3_L007_R1.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4456435372 FASTQ S3_L007_R1 unaligned CPTAC3 fa0aa6e7-66b7-4300-83db-5680970620b3 9811c0b18649951530111ae9cf36a815 {"aliquot_tag": "ALQ_39afe7fb", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01757.RNA-Seq.S3_L007_R2.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R2_001.fastq.gz 4188669057 FASTQ S3_L007_R2 unaligned CPTAC3 f8716479-1ab4-4100-b1fa-59c3f8922cd2 e37bf6cd9d6736f195f536ce47e8ef18 {"aliquot_tag": "ALQ_39afe7fb", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01757.RNA-Seq.transcriptome.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.transcriptome.gdc_realn.bam 11303429424 BAM transcriptome harmonized CPTAC3 95c13635-fd47-44eb-be6b-3c8d0c7f8fd7 9a359593232dbda74625654ee161544a {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor"} -C3N-01757.WGS.N C3N-01757 HNSCC WGS blood_normal CPT0163310002 CPT0163310002.WholeGenome.RP-1303.bam 72045264156 BAM aligned CPTAC3 c12255a9-3bbb-465f-80dc-ea9a6702842e 5045f8ebc4b48e92c338da6a9fa61050 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01757.WGS.N.hg38 C3N-01757 HNSCC WGS blood_normal CPT0163310002 104e39d5-8690-4b15-b5f5-d59f8f8117e8_wgs_gdc_realn.bam 104465276829 BAM harmonized CPTAC3 76f853cb-15ad-43a3-a3c7-dbc7c36a828f 6e505ac14e174b34778801ae3a7ff4b6 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01757.WGS.T C3N-01757 HNSCC WGS tumor CPT0163240006 CPT0163240006.WholeGenome.RP-1303.bam 61963563756 BAM aligned CPTAC3 8ffa4bbc-bd38-46c0-b96c-cb8840783e81 32b1d8d08fa1118ea663178b45569245 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor"} -C3N-01757.WGS.T.hg38 C3N-01757 HNSCC WGS tumor CPT0163240006 b6922176-2c86-437a-8530-b832b29a392d_wgs_gdc_realn.bam 91316151950 BAM harmonized CPTAC3 fb1b10c8-3c82-40a1-83a5-0c363c41b25f 748edfb5467804edc96b9a9672640f20 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor"} -C3N-01757.WXS.N C3N-01757 HNSCC WXS blood_normal CPT0163310002 CPT0163310002.WholeExome.RP-1303.bam 35096404020 BAM aligned CPTAC3 3e44b2e4-3dbd-42be-8058-a899a1b33a5a 5e5dd90c729d297f8e816320bfa32912 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01757.WXS.N.hg38 C3N-01757 HNSCC WXS blood_normal CPT0163310002 104e39d5-8690-4b15-b5f5-d59f8f8117e8_wxs_gdc_realn.bam 47410232633 BAM harmonized CPTAC3 43b3ce32-1437-49b1-a760-6a0e476b0f27 bfb41e408d6d8d6601b93ad01dc630a5 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01757.WXS.T C3N-01757 HNSCC WXS tumor CPT0163240006 CPT0163240006.WholeExome.RP-1303.bam 19741722869 BAM aligned CPTAC3 295f48f6-5bf7-46cd-9b50-5011fff28b64 b440f6a57a7b8bfb7bf95669998dc622 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor"} -C3N-01757.WXS.T.hg38 C3N-01757 HNSCC WXS tumor CPT0163240006 b6922176-2c86-437a-8530-b832b29a392d_wxs_gdc_realn.bam 27645739306 BAM harmonized CPTAC3 7e6b956e-8f44-4416-af18-96c17a6abd03 81ce7433412a87c151003c216ddf27e3 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor"} -C3N-01758.MethArray.Green.T C3N-01758 HNSCC Methylation_Array tumor CPT0163340006 203271740111_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e00d4928-893b-4614-bd9b-4080daa66c21 3598e54fa959b3135e57d6c92d510613 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor"} -C3N-01758.MethArray.Red.T C3N-01758 HNSCC Methylation_Array tumor CPT0163340006 203271740111_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 94e7b9ab-d0f6-4759-a33f-d91741a8c796 e3e77c0154bff2212e55300a9de15ec8 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor"} -C3N-01758.miRNA-Seq.S26_L002_R1.T C3N-01758 HNSCC miRNA-Seq tumor CPT0163340009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L002_R1_001.unaln.bam 245888549 BAM S26_L002_R1 unaligned CPTAC3 c4ab8dd9-f35e-475e-a125-01a53732ffa6 1cccc75c0018c79c439a6a73a48d9f18 {"aliquot_tag": "ALQ_f2f3345e", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01758.miRNA-Seq.T.hg38 C3N-01758 HNSCC miRNA-Seq tumor CPT0163340009 f4927550-6fdb-4c6c-9ee6-a72cc1bd0025_mirnaseq_gdc_realn.bam 271473254 BAM harmonized CPTAC3 051d9f95-1738-4cd2-ad4d-1b90b6815204 72e298a093bc37f5a74fff27e4794e11 {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.chimeric.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.chimeric.gdc_realn.bam 214732566 BAM chimeric harmonized CPTAC3 4f82a3e2-f949-4250-afd8-ad5e143f5b36 d2c5044039e9083ce18bde188937eb3c {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.chimeric.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.chimeric.gdc_realn.bam 198674862 BAM chimeric harmonized CPTAC3 ccdf470d-cde2-428b-93d1-9eae51c2adb0 a63449d3e2dce686b5841c84d2947c0e {"aliquot_tag": "ALQ_14a0319f", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.genomic.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.genomic.gdc_realn.bam 8776393989 BAM genomic harmonized CPTAC3 d9a731b4-954a-4811-b9ae-7afcd3037edd d8d8e01a126f17b321d64f21d3a79cb6 {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.genomic.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.genomic.gdc_realn.bam 9092215231 BAM genomic harmonized CPTAC3 3cdf0a71-47d1-465b-ab61-64854cde2bf9 9e42d32de0291c1aa3a1cc024e6cc2c3 {"aliquot_tag": "ALQ_14a0319f", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.S2_L007_R1.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4295548882 FASTQ S2_L007_R1 unaligned CPTAC3 11c566e5-9dbf-446c-8f74-2a5bccdc5ac7 53b952aab417d6ab6a6e086e5d1aeb8f {"aliquot_tag": "ALQ_f2f3345e", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.S2_L007_R2.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R2_001.fastq.gz 4544028689 FASTQ S2_L007_R2 unaligned CPTAC3 7c46b56e-2c5b-4ccb-bf95-18dc3cb1390e 2a9921abea7ff547f8aa1fe34ef1432d {"aliquot_tag": "ALQ_f2f3345e", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.S33_R1.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R1_001.fastq.gz 5425566184 FASTQ S33_R1 unaligned CPTAC3 30c2b78b-555a-4bfc-86eb-aff6b94506f7 20ec7f1cbac62077da367c1fa960d1f1 {"aliquot_tag": "ALQ_14a0319f", "sample": "S33", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.S33_R2.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R2_001.fastq.gz 5524554250 FASTQ S33_R2 unaligned CPTAC3 5638036a-5c90-41ee-b2f8-67671837706b 1ccf6c7d24a56f0ae7b025fae28c93b6 {"aliquot_tag": "ALQ_14a0319f", "sample": "S33", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.transcriptome.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.transcriptome.gdc_realn.bam 12095043441 BAM transcriptome harmonized CPTAC3 9c9f2c11-d6fd-40c1-b267-94044a71e3f8 05ead149aefbf969aa912bb72037e1df {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor"} -C3N-01758.RNA-Seq.transcriptome.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.transcriptome.gdc_realn.bam 6425281428 BAM transcriptome harmonized CPTAC3 f2877e1d-b15b-469a-a877-15685a0dfdca ad6ebb179b44508c2bcd18429c2efa17 {"aliquot_tag": "ALQ_14a0319f", "gdc_sample_type": "Primary Tumor"} -C3N-01758.WGS.N C3N-01758 HNSCC WGS blood_normal CPT0163400002 CPT0163400002.WholeGenome.RP-1303.bam 83248387366 BAM aligned CPTAC3 3265baad-dcb4-46ed-929e-2e48451ce84e 734ec99c1ab874a1ade79d3e5bce0e6e {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01758.WGS.N.hg38 C3N-01758 HNSCC WGS blood_normal CPT0163400002 3bff291b-fc59-4261-816f-264d8247eb38_wgs_gdc_realn.bam 121567166996 BAM harmonized CPTAC3 c48e7a95-4c0b-4191-81b0-6eac27d27aaa 8767fda59b163ec7263aac52830a032d {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01758.WGS.T C3N-01758 HNSCC WGS tumor CPT0163340006 CPT0163340006.WholeGenome.RP-1303.bam 74585642050 BAM aligned CPTAC3 62ad4766-ad0e-4024-b5be-613ac805d5ac 772ded85be81a3a286502c4c1154b936 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor"} -C3N-01758.WGS.T.hg38 C3N-01758 HNSCC WGS tumor CPT0163340006 da288743-2514-4bef-9456-63bfd6224913_wgs_gdc_realn.bam 112088611660 BAM harmonized CPTAC3 48f0a099-6792-436d-97f3-8e0905da65e6 54ce6a034a199f890c158a2420be96fd {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor"} -C3N-01758.WXS.N C3N-01758 HNSCC WXS blood_normal CPT0163400002 CPT0163400002.WholeExome.RP-1303.bam 50906037221 BAM aligned CPTAC3 e05468ae-4aec-42ad-aa00-8306b656316c a3ede04ed50c550ae44e2a0c2446299d {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01758.WXS.N.hg38 C3N-01758 HNSCC WXS blood_normal CPT0163400002 3bff291b-fc59-4261-816f-264d8247eb38_wxs_gdc_realn.bam 69409086967 BAM harmonized CPTAC3 02f74d73-e9f6-4502-b4ac-3b3b7128ce3b b2f349a75ffa56cd654aefcfb3c07f58 {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01758.WXS.T C3N-01758 HNSCC WXS tumor CPT0163340006 CPT0163340006.WholeExome.RP-1303.bam 20327565769 BAM aligned CPTAC3 fd801b39-f436-4c46-bbb4-d1015bc2dec3 770d7d67263eb7313270bb1531551617 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor"} -C3N-01758.WXS.T.hg38 C3N-01758 HNSCC WXS tumor CPT0163340006 da288743-2514-4bef-9456-63bfd6224913_wxs_gdc_realn.bam 27700702560 BAM harmonized CPTAC3 0053663d-6aaf-4a31-8b8f-7611df7de900 03fff39f64b72db04fc92ac91682b186 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor"} -C3N-01761.MethArray.Green.T C3N-01761 UCEC Methylation_Array tumor CPT0116710006 203219640158_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 58950107-2b51-4bed-9654-30ad10d5f09e 07ac57a491d0fe64f1b821797f5d52f4 {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor"} -C3N-01761.MethArray.Red.T C3N-01761 UCEC Methylation_Array tumor CPT0116710006 203219640158_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 3713ccdd-129e-4c9b-8683-2e5980a7567d b7519e324d8bcc39baeb1166333b70f1 {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor"} -C3N-01761.miRNA-Seq.A.hg38 C3N-01761 UCEC miRNA-Seq tissue_normal CPT0116730009 3a0d040b-67d0-4a02-82c3-afe2129baf17_mirnaseq_gdc_realn.bam 264592827 BAM harmonized CPTAC3 4a343a0d-1e14-47fd-85d9-7ecf27cee056 e0274b4d48a339bd29e0958b79ea5644 {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.miRNA-Seq.S45_L003_R1.A C3N-01761 UCEC miRNA-Seq tissue_normal CPT0116730009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L003_R1_001.unaln.bam 228410456 BAM S45_L003_R1 unaligned CPTAC3 c3d00ee5-d0ef-4272-b187-d073b65f7f2d 9afba40fa3197f03aa1e4bbcee8dafd2 {"aliquot_tag": "ALQ_83bf8ce6", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.miRNA-Seq.S46_L003_R1.T C3N-01761 UCEC miRNA-Seq tumor CPT0116710009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCCCGA_S46_L003_R1_001.unaln.bam 175878598 BAM S46_L003_R1 unaligned CPTAC3 2284d362-1b86-4416-b08f-95c2441c88f8 26e7bb1867ba683b1588de4756bc45af {"aliquot_tag": "ALQ_f97fdf86", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01761.miRNA-Seq.T.hg38 C3N-01761 UCEC miRNA-Seq tumor CPT0116710009 e4cb46c9-a54f-4838-9860-d36384265db7_mirnaseq_gdc_realn.bam 195992967 BAM harmonized CPTAC3 8a9e2af6-bdae-4e8f-b08e-737dd5b52c59 9cf3add7a1acb8bc48924a380e75dc94 {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.chimeric.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.chimeric.gdc_realn.bam 50744942 BAM chimeric harmonized CPTAC3 83a15a2f-e198-40c2-9c16-f9f53d36f7f4 efd557cca3aa8c5284c7985ab1b316b5 {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.RNA-Seq.chimeric.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.chimeric.gdc_realn.bam 36431681 BAM chimeric harmonized CPTAC3 922f1597-f852-4c6e-8415-ddc3f51d5b4c e5d1cdffbd2b747d47bba93eb8843997 {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.chimeric.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.chimeric.gdc_realn.bam 206912372 BAM chimeric harmonized CPTAC3 99f6e192-9456-4144-8673-005045437805 edc6a3d9ad80a2b855927d7813898f87 {"aliquot_tag": "ALQ_2923cf83", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.genomic.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.genomic.gdc_realn.bam 10326755017 BAM genomic harmonized CPTAC3 5a30f7fd-5910-42b9-8c36-473fa3d2e791 73aa47b29052d2839d00750fc9a69faa {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.RNA-Seq.genomic.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.genomic.gdc_realn.bam 9471075829 BAM genomic harmonized CPTAC3 0c3362aa-e7d6-4e30-9ec9-da744b6a8437 4c135da72c91a28d6146959577fffa21 {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.genomic.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.genomic.gdc_realn.bam 9395719955 BAM genomic harmonized CPTAC3 3196a08d-8aca-4f7c-b711-5f7e9465dabd 8888b4c32fbdcb88ec766716d50ee0f3 {"aliquot_tag": "ALQ_2923cf83", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.S18_L007_R1.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R1_001.fastq.gz 4435924861 FASTQ S18_L007_R1 unaligned CPTAC3 42123135-cc12-4961-990d-38bde0dc0f0d 819d746cab3ddc35dc35fccf3ebdc685 {"aliquot_tag": "ALQ_f97fdf86", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.S18_L007_R2.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R2_001.fastq.gz 4648359258 FASTQ S18_L007_R2 unaligned CPTAC3 8aed8995-cd70-4c88-b44f-be92eedfa7c9 a09e2841f30f85ff211aabbf2c123aa3 {"aliquot_tag": "ALQ_f97fdf86", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.S3_L001_R1.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R1_001.fastq.gz 4553195325 FASTQ S3_L001_R1 unaligned CPTAC3 d3dcaa5c-6f97-4a6a-9391-455c3cab46ca 9c76744111118a6953639d6145b62c69 {"aliquot_tag": "ALQ_83bf8ce6", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.RNA-Seq.S3_L001_R2.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R2_001.fastq.gz 5127210148 FASTQ S3_L001_R2 unaligned CPTAC3 f5c08b0d-bf9c-4952-8dea-e834e6c02edc ff58b4a0dd1a9e53732d303d7f6611c0 {"aliquot_tag": "ALQ_83bf8ce6", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.RNA-Seq.S92_R1.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R1_001.fastq.gz 6478850368 FASTQ S92_R1 unaligned CPTAC3 902b5df0-d437-4706-b0af-7e87fea36aa4 526c584a616a3d568f30c0ea96b7b86a {"aliquot_tag": "ALQ_2923cf83", "sample": "S92", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.S92_R2.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R2_001.fastq.gz 6705468787 FASTQ S92_R2 unaligned CPTAC3 9e1838eb-04b2-4c63-a3d6-25602e239f3e f939790c43a66ed171427d8cc3b9f3b5 {"aliquot_tag": "ALQ_2923cf83", "sample": "S92", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.transcriptome.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.transcriptome.gdc_realn.bam 12405732133 BAM transcriptome harmonized CPTAC3 adb0ccf7-5c4b-47d3-9fa5-e59b819a1b4b 3d38525275c7ae2a1b0b40a4615965c6 {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.RNA-Seq.transcriptome.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.transcriptome.gdc_realn.bam 12919620725 BAM transcriptome harmonized CPTAC3 01892a3d-1e9f-435b-96fc-8ebcb200b1b3 af3579cc4baa4b233a5e919420d68eaf {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor"} -C3N-01761.RNA-Seq.transcriptome.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.transcriptome.gdc_realn.bam 4966070757 BAM transcriptome harmonized CPTAC3 bedf9ed4-922b-40d5-8134-fb50b42fde92 dc82762cc97f79fa71605653368cee28 {"aliquot_tag": "ALQ_2923cf83", "gdc_sample_type": "Primary Tumor"} -C3N-01761.WGS.A C3N-01761 UCEC WGS tissue_normal CPT0116730006 CPT0116730006.WholeGenome.RP-1303.bam 62080336140 BAM aligned CPTAC3 1000279b-f0e0-4fa2-adc6-3f88effa9d83 4aca63b69b618b6e8a2098d8fe548b47 {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.WGS.A.hg38 C3N-01761 UCEC WGS tissue_normal CPT0116730006 c84d7702-d800-4bfa-a134-0d1bb8ea223f_wgs_gdc_realn.bam 90757289222 BAM harmonized CPTAC3 9ad0a850-d443-4b27-9b44-882e6546806a 89579eb07a9f8b9d07716db63429649e {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.WGS.N C3N-01761 UCEC WGS blood_normal CPT0116770002 CPT0116770002.WholeGenome.RP-1303.bam 56363089556 BAM aligned CPTAC3 d62aba1e-954c-46eb-bced-787133740abb 61eb5a1bbf9015adfcbb561a83760b14 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01761.WGS.N.hg38 C3N-01761 UCEC WGS blood_normal CPT0116770002 e3066c41-c8ee-4a65-8c89-f61803df8cf7_wgs_gdc_realn.bam 80584615516 BAM harmonized CPTAC3 323b94f5-866f-473c-862a-58c5ffbf4431 bfe43fff0a41a9025f6d64c9fde3d467 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01761.WGS.T C3N-01761 UCEC WGS tumor CPT0116710006 CPT0116710006.WholeGenome.RP-1303.bam 60593597286 BAM aligned CPTAC3 79ffd0ad-698e-4bdd-8d73-e37c81895310 e2a26237531e4c0edf0912bf86c19f4e {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor"} -C3N-01761.WGS.T.hg38 C3N-01761 UCEC WGS tumor CPT0116710006 bde7fa77-8666-4c4d-8360-ba619e4764f0_wgs_gdc_realn.bam 87889780308 BAM harmonized CPTAC3 5070dd1c-6214-4114-988d-9baeb4ff6614 0b24c2a0862087b765fe1a78484415eb {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor"} -C3N-01761.WXS.A C3N-01761 UCEC WXS tissue_normal CPT0116730006 CPT0116730006.WholeExome.RP-1303.bam 23759610458 BAM aligned CPTAC3 d721e318-17d0-466b-b28b-5fdf2b0f14f9 82979d0b62ad91e773844c9b057f99b6 {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.WXS.A.hg38 C3N-01761 UCEC WXS tissue_normal CPT0116730006 c84d7702-d800-4bfa-a134-0d1bb8ea223f_wxs_gdc_realn.bam 32138016739 BAM harmonized CPTAC3 ce067e34-2d2e-4378-8043-5a4c604a37bc da9cd7f98261a078cb2950eda0fecf0c {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01761.WXS.N C3N-01761 UCEC WXS blood_normal CPT0116770002 CPT0116770002.WholeExome.RP-1303.bam 18397478007 BAM aligned CPTAC3 fe89fb8d-9d81-4afb-8bc7-ba3e8bda15d5 b4c3128706b82c99518e04c805b333b5 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01761.WXS.N.hg38 C3N-01761 UCEC WXS blood_normal CPT0116770002 e3066c41-c8ee-4a65-8c89-f61803df8cf7_wxs_gdc_realn.bam 25271970628 BAM harmonized CPTAC3 5639cd90-8e00-4c68-b71d-8baee288a727 8a3a7fe234545a901f679e8f6240c3d3 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-01761.WXS.T C3N-01761 UCEC WXS tumor CPT0116710006 CPT0116710006.WholeExome.RP-1303.bam 23847559113 BAM aligned CPTAC3 40dfbc0c-3439-463e-803a-cc8adac46576 462b23c3d560067a78f40471b1e17c75 {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor"} -C3N-01761.WXS.T.hg38 C3N-01761 UCEC WXS tumor CPT0116710006 bde7fa77-8666-4c4d-8360-ba619e4764f0_wxs_gdc_realn.bam 32270906859 BAM harmonized CPTAC3 656835ab-7a9e-4cd9-a040-2a8b18e60d4b 7b87c4affc44b64723891f5cc6f0538a {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor"} -C3N-01763.MethArray.Green.T C3N-01763 UCEC Methylation_Array tumor CPT0116860006 203220070171_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f6437617-fb68-4311-8f7a-21fb919fd528 735e1bd148dc3d7bc803c0dd365f514d {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor"} -C3N-01763.MethArray.Red.T C3N-01763 UCEC Methylation_Array tumor CPT0116860006 203220070171_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 4acf73af-ff37-41b2-a110-a5dcb52d74eb 280907df8383b7ecf15cb802adf96723 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor"} -C3N-01763.miRNA-Seq.S39_L002_R1.T C3N-01763 UCEC miRNA-Seq tumor CPT0116850047 190508_UNC31-K00269_0215_BH7FYKBBXY_CTATAC_S39_L002_R1_001.unaln.bam 256135344 BAM S39_L002_R1 unaligned CPTAC3 64239bd4-2013-4351-98a9-29ad64ebe266 cf3b487e56b53d75c77b738b8197b9b8 {"aliquot_tag": "ALQ_7e7d2390", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01763.miRNA-Seq.S47_L003_R1.T C3N-01763 UCEC miRNA-Seq tumor CPT0116860009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGAAG_S47_L003_R1_001.unaln.bam 210384316 BAM S47_L003_R1 unaligned CPTAC3 cef09340-c858-406c-b0b0-f1c1a98676ee 36cb75ad03132528daa24c6a73993f15 {"aliquot_tag": "ALQ_ba09b143", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01763.miRNA-Seq.T.hg38 C3N-01763 UCEC miRNA-Seq tumor CPT0116850047 6ae435b8-6206-45a6-8202-5da4a085d070_mirnaseq_gdc_realn.bam 293857045 BAM harmonized CPTAC3 ee8a6ac9-24e0-420b-919b-9d7da7d44efe e49f8e05f799a51e8ae8000bdc957f12 {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor"} -C3N-01763.miRNA-Seq.T.hg38 C3N-01763 UCEC miRNA-Seq tumor CPT0116860009 e62b0035-272a-4ee1-b2c4-a0197f04e058_mirnaseq_gdc_realn.bam 234584599 BAM harmonized CPTAC3 6f013723-651d-429c-af97-fa40ec1039d7 1b76b951b2c9f998f219d9da512b260e {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.chimeric.gdc_realn.bam 40971318 BAM chimeric harmonized CPTAC3 9a35a226-f3d1-430f-91e8-589efad3292c 6ca86ae377eab9bd88cd93a25acefb27 {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.chimeric.gdc_realn.bam 25286691 BAM chimeric harmonized CPTAC3 a85f8fe4-bd19-48a3-8267-50cce3d744b1 aae6b6fb1dc5c2e4e78d32a2e7e59de0 {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.genomic.gdc_realn.bam 8586502346 BAM genomic harmonized CPTAC3 cf8c1439-4329-434b-b9ff-a79411dce763 2b4e0c8f4c8098df1c46c26c78cab98a {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.genomic.gdc_realn.bam 7429096308 BAM genomic harmonized CPTAC3 75f628a0-5b88-4e21-95f4-6002860b8d0a 02c5edc3a59410a767e941ebd976b270 {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.S23_L006_R1.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 4167536358 FASTQ S23_L006_R1 unaligned CPTAC3 cc569ee8-69b0-458c-95b1-b339524714ef a6db3880f3b8b398e1155341097f8ac5 {"aliquot_tag": "ALQ_7e7d2390", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.S23_L006_R2.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4639896452 FASTQ S23_L006_R2 unaligned CPTAC3 d9683cdb-83d8-483a-b5a1-281e8894afe3 12befb0d38cfebf27fd8fe24a1e63052 {"aliquot_tag": "ALQ_7e7d2390", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.S25_L007_R1.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R1_001.fastq.gz 3572864062 FASTQ S25_L007_R1 unaligned CPTAC3 0ec582f3-4c3e-4cd5-af45-8a041b11e71a f0d0d0f5d0cf34dbde05dd85fdd6a5a6 {"aliquot_tag": "ALQ_ba09b143", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.S25_L007_R2.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R2_001.fastq.gz 3710719905 FASTQ S25_L007_R2 unaligned CPTAC3 adbc8553-ce20-401b-be51-9808d7604857 ce760afe71e5fd0db7d478ab3997a489 {"aliquot_tag": "ALQ_ba09b143", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.transcriptome.gdc_realn.bam 13224328053 BAM transcriptome harmonized CPTAC3 c5220c56-9fb2-4b91-a1b6-db485800a51c f7c9f62044100a7dc17fc2f3f7cbdd25 {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor"} -C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.transcriptome.gdc_realn.bam 10619418595 BAM transcriptome harmonized CPTAC3 56a2059e-5322-4206-9448-24da47ef9e88 9053d769790a0b2cee0d28a4971768a3 {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor"} -C3N-01763.WGS.N C3N-01763 UCEC WGS blood_normal CPT0116930002 CPT0116930002.WholeGenome.RP-1303.bam 63529229182 BAM aligned CPTAC3 fac5d673-2c84-4a3f-92c3-4389e9fcc042 9055fdc7f62499dd30cf6fe39ba4d296 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01763.WGS.N.hg38 C3N-01763 UCEC WGS blood_normal CPT0116930002 a636d8ce-b0db-4f41-8127-626e3651f2ab_wgs_gdc_realn.bam 93453621013 BAM harmonized CPTAC3 ab009282-d788-4df8-9660-a2ef8a077f36 3caf659efd7e62baa8e3d44b95098924 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01763.WGS.T C3N-01763 UCEC WGS tumor CPT0116860006 CPT0116860006.WholeGenome.RP-1303.bam 62758190402 BAM aligned CPTAC3 46e5bbe8-c4ef-4b48-846e-ef1d75a1736f fcca37b8610bf4173666858ee2b86922 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor"} -C3N-01763.WGS.T.hg38 C3N-01763 UCEC WGS tumor CPT0116860006 4e9cf599-cad0-4b16-938f-a2832fa00c41_wgs_gdc_realn.bam 92812729556 BAM harmonized CPTAC3 320489fe-1ee7-4362-b061-74fd60b73c04 2a5ab5f036c8a1cbd9a319e0e9b79989 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor"} -C3N-01763.WXS.N C3N-01763 UCEC WXS blood_normal CPT0116930002 CPT0116930002.WholeExome.RP-1303.bam 18891845507 BAM aligned CPTAC3 f6d53e01-b50b-4361-a4eb-c9c4153dbcba e83ee91cd31e0238d00197fd99c29c80 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01763.WXS.N.hg38 C3N-01763 UCEC WXS blood_normal CPT0116930002 a636d8ce-b0db-4f41-8127-626e3651f2ab_wxs_gdc_realn.bam 27018820463 BAM harmonized CPTAC3 b5793cec-155c-4fda-836c-b0caa9e6cfac 00d28f83f2217f9f31ea23ace9617d95 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01763.WXS.T C3N-01763 UCEC WXS tumor CPT0116860006 CPT0116860006.WholeExome.RP-1303.bam 30370610097 BAM aligned CPTAC3 fc01fa66-fe7b-4d5e-ba6d-eeaa55e166e2 06e1de96ff969d7b9df9e71ffda30fd1 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor"} -C3N-01763.WXS.T.hg38 C3N-01763 UCEC WXS tumor CPT0116860006 4e9cf599-cad0-4b16-938f-a2832fa00c41_wxs_gdc_realn.bam 41744221056 BAM harmonized CPTAC3 b38c08be-3b1b-49c7-9782-2eae3fefd3c7 15e2fb3f9e5efd7cbcd3c3eec95e7392 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor"} -C3N-01764.MethArray.Green.T C3N-01764 UCEC Methylation_Array tumor CPT0181320006 203561450006_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 97f67ed4-d67d-41fa-83e5-6c42f761bcbb 734dc7f7662d8adee62ddabc170a2bb5 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor"} -C3N-01764.MethArray.Red.T C3N-01764 UCEC Methylation_Array tumor CPT0181320006 203561450006_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 bb387e09-332e-4e39-bec4-6fc72756a388 833ee7a43f5f407f060d3808114046f6 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor"} -C3N-01764.miRNA-Seq.S37_L002_R1.T C3N-01764 UCEC miRNA-Seq tumor CPT0181320009 190813_UNC32-K00270_0196_AH5MCWBBXY_ACTTGA_S37_L002_R1_001.unaln.bam 194689135 BAM S37_L002_R1 unaligned CPTAC3 49124834-1a06-417c-b706-0a6f7b7b13db 1eec9e62d70fc01dc3c469d1e843a24f {"aliquot_tag": "ALQ_ffa6c2e5", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01764.miRNA-Seq.T.hg38 C3N-01764 UCEC miRNA-Seq tumor CPT0181320009 6fec6a9c-4b7e-48e5-8ea3-c592d6d876ce_mirnaseq_gdc_realn.bam 220766183 BAM harmonized CPTAC3 6796c265-1c2f-45c2-92b4-123225e76709 36d37153b7b070c51a6b21676f987a91 {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.chimeric.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.chimeric.gdc_realn.bam 36736805 BAM chimeric harmonized CPTAC3 80ce3c1b-441d-4a5e-84a5-193d476c3a56 d5f4841b6d10a475ae5c98dae646f2d8 {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.chimeric.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.chimeric.gdc_realn.bam 145889099 BAM chimeric harmonized CPTAC3 e6af529e-908e-453e-ae4e-5a26d30b5984 38fdc5950df869fc32f8689e366bd804 {"aliquot_tag": "ALQ_e1c340f3", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.genomic.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.genomic.gdc_realn.bam 8374030254 BAM genomic harmonized CPTAC3 08807c5f-f25c-4ae9-97d9-d567649b8a3e 72bd10eb4adebbe1f2ecf7761379c10d {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.genomic.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.genomic.gdc_realn.bam 6608679097 BAM genomic harmonized CPTAC3 26492594-d827-4768-adb4-7bb8ffaa0610 1e3a8f39a01e8d5dcf47ca7b2f847cd5 {"aliquot_tag": "ALQ_e1c340f3", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.S2_L001_R1.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R1_001.fastq.gz 4121287607 FASTQ S2_L001_R1 unaligned CPTAC3 15fe01a9-90bd-4b66-932a-1a21f1b3becf 18eac54ff0f023df94e6eb55fec54c22 {"aliquot_tag": "ALQ_ffa6c2e5", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.S2_L001_R2.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R2_001.fastq.gz 4300105222 FASTQ S2_L001_R2 unaligned CPTAC3 ab5775a0-83ef-4633-9e63-137cb9a40533 14750d22e4ea88d4d82f7d804dd77b70 {"aliquot_tag": "ALQ_ffa6c2e5", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.S73_R1.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R1_001.fastq.gz 4474524968 FASTQ S73_R1 unaligned CPTAC3 086b8c68-a3c9-4af5-ac76-2b7ba7995bcc e0d77f690e5c1d25ec3feb665ece314f {"aliquot_tag": "ALQ_e1c340f3", "sample": "S73", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.S73_R2.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R2_001.fastq.gz 4633509902 FASTQ S73_R2 unaligned CPTAC3 c840f84d-dd0c-4ec0-b5fe-5706c6452139 843ad5f34819b5b73478bedd32d5457d {"aliquot_tag": "ALQ_e1c340f3", "sample": "S73", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.transcriptome.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.transcriptome.gdc_realn.bam 10133659235 BAM transcriptome harmonized CPTAC3 a9bf92b2-2d60-4cb0-b8c3-cb5333fba839 d4628a1443ad0a6c5a931b1e0180e963 {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor"} -C3N-01764.RNA-Seq.transcriptome.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.transcriptome.gdc_realn.bam 3292340840 BAM transcriptome harmonized CPTAC3 d15d2caf-aead-49e8-aa63-63389a871dd5 a2839877836de9f5a151740a670a8bdc {"aliquot_tag": "ALQ_e1c340f3", "gdc_sample_type": "Primary Tumor"} -C3N-01764.WGS.N C3N-01764 UCEC WGS blood_normal CPT0181420002 CPT0181420002.WholeGenome.RP-1303.bam 76306043227 BAM aligned CPTAC3 f1aafd55-375c-4e1a-bbf5-1764a83d5160 8438106dea706da81a56d1aa5c083e46 {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01764.WGS.N.hg38 C3N-01764 UCEC WGS blood_normal CPT0181420002 8e1413b9-4510-41ba-aebc-7acdf3bc86f0_wgs_gdc_realn.bam 110211404774 BAM harmonized CPTAC3 f722819c-c714-400c-a6da-b7e25e52f829 87844d3bfa92705f305c7c50047dfd02 {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01764.WGS.T C3N-01764 UCEC WGS tumor CPT0181320006 CPT0181320006.WholeGenome.RP-1303.bam 75986964008 BAM aligned CPTAC3 f6bf80a8-7c87-4dfd-b7a0-f13c6c415ded 8f27ccdd073ca134997eb9dcd7fdc7fc {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor"} -C3N-01764.WGS.T.hg38 C3N-01764 UCEC WGS tumor CPT0181320006 5dd78a88-3160-492f-916d-85ea449c9db5_wgs_gdc_realn.bam 108299266087 BAM harmonized CPTAC3 1694cf41-5a57-4dcc-886c-40bfeef65616 949a85587a0c14d7717c99b3a83af9c9 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor"} -C3N-01764.WXS.N C3N-01764 UCEC WXS blood_normal CPT0181420002 CPT0181420002.WholeExome.RP-1303.bam 28455413230 BAM aligned CPTAC3 27c396c4-1cf7-4b34-a4a5-feb81478fb97 f69e718d07e2c34cd2a2a597a1a48f7a {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01764.WXS.N.hg38 C3N-01764 UCEC WXS blood_normal CPT0181420002 8e1413b9-4510-41ba-aebc-7acdf3bc86f0_wxs_gdc_realn.bam 38845229497 BAM harmonized CPTAC3 f3b81a82-cf37-45ea-9d2d-1332640160cf c395095129390a8e231d209cdd84ad96 {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01764.WXS.T C3N-01764 UCEC WXS tumor CPT0181320006 CPT0181320006.WholeExome.RP-1303.bam 27437650198 BAM aligned CPTAC3 e7d2782d-96fa-45ad-95fa-7e0b65f7d30a 264e153c40ed2f7c61d38e12a89c2022 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor"} -C3N-01764.WXS.T.hg38 C3N-01764 UCEC WXS tumor CPT0181320006 5dd78a88-3160-492f-916d-85ea449c9db5_wxs_gdc_realn.bam 37407215847 BAM harmonized CPTAC3 e44a3fea-f265-4043-a7bb-dd851889f503 28edb361bc7a65c7281c6d1038f914c8 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor"} -C3N-01765.MethArray.Green.T C3N-01765 UCEC Methylation_Array tumor CPT0116940006 203220070156_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cbe0a7a7-979b-4e31-9018-ab1d47a295f1 faf1b5119bd5b3eb714c1b98e182e4ff {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor"} -C3N-01765.MethArray.Red.T C3N-01765 UCEC Methylation_Array tumor CPT0116940006 203220070156_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 4a8a0b93-ebec-4894-95a5-61720377f243 7f3116f64ba70529ace9632d39022e15 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor"} -C3N-01765.miRNA-Seq.A.hg38 C3N-01765 UCEC miRNA-Seq tissue_normal CPT0116960009 365b23f0-c713-4e20-8a80-8af6ee4a4601_mirnaseq_gdc_realn.bam 317472192 BAM harmonized CPTAC3 be06190b-13da-40b3-b932-ab379fab6401 5cf8964340371303f5675f63eaf5ff4c {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.miRNA-Seq.S46_L003_R1.A C3N-01765 UCEC miRNA-Seq tissue_normal CPT0116960009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L003_R1_001.unaln.bam 281375848 BAM S46_L003_R1 unaligned CPTAC3 f2906fae-7f16-4cb2-86b8-8b0292f3831a c8b8e722c7d81b41aed4d9d41d754040 {"aliquot_tag": "ALQ_715562e6", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.miRNA-Seq.S48_L003_R1.T C3N-01765 UCEC miRNA-Seq tumor CPT0116940009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGGCA_S48_L003_R1_001.unaln.bam 211345881 BAM S48_L003_R1 unaligned CPTAC3 cf99070a-2020-4fb1-ae9e-c729767b4b48 d07dedbe6bf8c7ca82b235f0d8473e1e {"aliquot_tag": "ALQ_b953186", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01765.miRNA-Seq.T.hg38 C3N-01765 UCEC miRNA-Seq tumor CPT0116940009 78a371fe-3d52-463f-a356-0f974afe9ae4_mirnaseq_gdc_realn.bam 236212983 BAM harmonized CPTAC3 01b09e5e-4ecc-4761-8c14-19523608d436 361ea16504564d8c95af87e1d9ff93f0 {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.chimeric.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.chimeric.gdc_realn.bam 35980714 BAM chimeric harmonized CPTAC3 6bfa08c9-cffe-48ac-b00b-1aebbe85a8a5 f43c31f5a7c91a4351369012950eae4e {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.RNA-Seq.chimeric.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.chimeric.gdc_realn.bam 26425887 BAM chimeric harmonized CPTAC3 5fe81484-3b91-4484-8852-2f68aedd4df6 fad0e468df620faef75d7d5b8c035f5b {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.chimeric.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.chimeric.gdc_realn.bam 141564140 BAM chimeric harmonized CPTAC3 5c5cebdb-d230-4e48-bcc0-51ef3e944f97 80da45658d9c28c132370b90281e3c64 {"aliquot_tag": "ALQ_98bf4f46", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.genomic.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.genomic.gdc_realn.bam 9473449150 BAM genomic harmonized CPTAC3 1caf09e8-c8fd-4918-b5c4-6513d2e0b356 11af2eadefa20d72e2d31d10ea6a693e {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.RNA-Seq.genomic.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.genomic.gdc_realn.bam 7748532240 BAM genomic harmonized CPTAC3 37a56f26-2034-4a05-9d5f-b921ce6660e9 1b4b91746162ed530c1637083eeb05f3 {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.genomic.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.genomic.gdc_realn.bam 7633547983 BAM genomic harmonized CPTAC3 59e97014-3355-443b-8989-d1f05b1ad6d7 d74df7b676b638921842c70f4e2a9783 {"aliquot_tag": "ALQ_98bf4f46", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.S20_L007_R1.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R1_001.fastq.gz 3478808141 FASTQ S20_L007_R1 unaligned CPTAC3 bb95410d-8d96-4e89-87f0-3b99e2df0819 356c8716f387271450d1f30ad14e62e5 {"aliquot_tag": "ALQ_b953186", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.S20_L007_R2.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R2_001.fastq.gz 3634000136 FASTQ S20_L007_R2 unaligned CPTAC3 09364581-4838-4c36-82b6-22479bab4426 8f992be3debb07eff5519ff20cdc4879 {"aliquot_tag": "ALQ_b953186", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.S2_L001_R1.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 3617796962 FASTQ S2_L001_R1 unaligned CPTAC3 8b854d30-5075-414f-b02f-8d68ede6807d 28d0f0f54875d0367f6bfcaf97dee662 {"aliquot_tag": "ALQ_715562e6", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.RNA-Seq.S2_L001_R2.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4064303340 FASTQ S2_L001_R2 unaligned CPTAC3 09e26c8f-83b4-4d54-95ed-e7d58df8fc7b aed81ac4969395e352aa00ff72c47549 {"aliquot_tag": "ALQ_715562e6", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.RNA-Seq.S39_R1.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R1_001.fastq.gz 4691831153 FASTQ S39_R1 unaligned CPTAC3 b5bc81e8-c6f7-48f6-9569-89cd460e5c2f c2955f19be845b76449f9ba44b4cc426 {"aliquot_tag": "ALQ_98bf4f46", "sample": "S39", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.S39_R2.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R2_001.fastq.gz 4782780001 FASTQ S39_R2 unaligned CPTAC3 f6e5bd59-83f4-4893-954b-74a02ddafc3b 53fbbafc379615f42222115c0bc2ef6d {"aliquot_tag": "ALQ_98bf4f46", "sample": "S39", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.transcriptome.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.transcriptome.gdc_realn.bam 10433711967 BAM transcriptome harmonized CPTAC3 67f6cd4f-0703-43be-b78d-62abae4a5f6c 0da38e27262154d744464936a7f284a8 {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.RNA-Seq.transcriptome.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.transcriptome.gdc_realn.bam 8924546081 BAM transcriptome harmonized CPTAC3 feca2ba7-371c-41a0-9a2e-bf34b52c9298 fd1e9048ad033c95592fd2bd596fdad1 {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor"} -C3N-01765.RNA-Seq.transcriptome.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.transcriptome.gdc_realn.bam 3592066261 BAM transcriptome harmonized CPTAC3 2acd8501-e18a-454d-9170-977f28b22809 08e4685c2738e73de88ad6418055ae22 {"aliquot_tag": "ALQ_98bf4f46", "gdc_sample_type": "Primary Tumor"} -C3N-01765.WGS.A C3N-01765 UCEC WGS tissue_normal CPT0116960006 CPT0116960006.WholeGenome.RP-1303.bam 60046690954 BAM aligned CPTAC3 4ff01569-6fd4-4aec-aa5c-4323a5b0dca8 ff85d25a92885be0514f2cbb0e8dbf1f {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.WGS.A.hg38 C3N-01765 UCEC WGS tissue_normal CPT0116960006 111a9ccd-261a-45b3-a0de-e7fb02aba7ad_wgs_gdc_realn.bam 89064072917 BAM harmonized CPTAC3 3d1c9bd4-190c-403e-9feb-64c1d9180224 d6194b448884dad3349c49216203aef8 {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.WGS.N C3N-01765 UCEC WGS blood_normal CPT0117000002 CPT0117000002.WholeGenome.RP-1303.bam 62631238284 BAM aligned CPTAC3 5e839f72-556e-44e3-b3c2-2cafde73fa32 bd457f2578be2dee2c936e72bf563718 {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01765.WGS.N.hg38 C3N-01765 UCEC WGS blood_normal CPT0117000002 ef732795-049e-4592-85cc-6d52b527fdd9_wgs_gdc_realn.bam 91671507303 BAM harmonized CPTAC3 e318ae36-246e-4200-a3bc-f0e922c937aa 3133787c8461497f0572f99bc30f0f9a {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01765.WGS.T C3N-01765 UCEC WGS tumor CPT0116940006 CPT0116940006.WholeGenome.RP-1303.bam 62505332363 BAM aligned CPTAC3 ec1147bc-b6c0-48ee-93d3-4dd690677e2b 3b7f574dbb51fd91a93541d468ed9d46 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor"} -C3N-01765.WGS.T.hg38 C3N-01765 UCEC WGS tumor CPT0116940006 55ba8dc9-e635-49e8-a195-e7246b7413ae_wgs_gdc_realn.bam 91290849907 BAM harmonized CPTAC3 bf246ae9-a2c4-4ecb-9862-4fae89a9e0a6 842cb6a64796bbc573da4e3b5cedfb33 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor"} -C3N-01765.WXS.A C3N-01765 UCEC WXS tissue_normal CPT0116960006 CPT0116960006.WholeExome.RP-1303.bam 18971991126 BAM aligned CPTAC3 b57413b7-fdb7-4a93-bee3-7096beb44d9d 05e88c5ddaf77aedc1165ed3d735f8b3 {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.WXS.A.hg38 C3N-01765 UCEC WXS tissue_normal CPT0116960006 111a9ccd-261a-45b3-a0de-e7fb02aba7ad_wxs_gdc_realn.bam 26193497562 BAM harmonized CPTAC3 65d8343c-b2fb-4e9d-81ba-87278768204a a9e6bfe31c7cfc93c9be5b08ff6eb485 {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01765.WXS.N C3N-01765 UCEC WXS blood_normal CPT0117000002 CPT0117000002.WholeExome.RP-1303.bam 26064247181 BAM aligned CPTAC3 0037cbbb-5afa-4ef0-ad2c-234fcd9198a8 85f9eebb2725c8033b15a67eb2ea91a5 {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01765.WXS.N.hg38 C3N-01765 UCEC WXS blood_normal CPT0117000002 ef732795-049e-4592-85cc-6d52b527fdd9_wxs_gdc_realn.bam 36154587097 BAM harmonized CPTAC3 9b23229f-1bc9-45fb-8ac6-6af6d0d3fb4e 7d642f31ac56207a70282b50af4641c2 {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01765.WXS.T C3N-01765 UCEC WXS tumor CPT0116940006 CPT0116940006.WholeExome.RP-1303.bam 20066048737 BAM aligned CPTAC3 60cd1fd1-dd98-417a-9a15-7f6294bdb19d 4a641d2d60d5efc2219ba13d90a61359 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor"} -C3N-01765.WXS.T.hg38 C3N-01765 UCEC WXS tumor CPT0116940006 55ba8dc9-e635-49e8-a195-e7246b7413ae_wxs_gdc_realn.bam 27918415923 BAM harmonized CPTAC3 7b85efdf-f131-454c-a472-e29529c11149 9d93f8a4da0c795da613180f4524ff0f {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor"} -C3N-01766.MethArray.Green.T C3N-01766 UCEC Methylation_Array tumor CPT0226810006 203561620077_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4e24246e-b168-45c3-8491-8742c3318a20 d202b187709784766dfd61163eb88876 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor"} -C3N-01766.MethArray.Red.T C3N-01766 UCEC Methylation_Array tumor CPT0226810006 203561620077_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 362dbf69-f909-44f5-8935-c5039744a0fb 7b3eba689d31a35d22d4ccc2c88731a3 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor"} -C3N-01766.miRNA-Seq.S33_L004_R1.T C3N-01766 UCEC miRNA-Seq tumor CPT0226810009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGGCG_S33_L004_R1_001.unaln.bam 237325732 BAM S33_L004_R1 unaligned CPTAC3 ae33088d-1e83-493e-b0f7-9ee8cb64a2db 0da529b04085d5d5f4281dd567a48c65 {"aliquot_tag": "ALQ_bf2b5675", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01766.miRNA-Seq.T.hg38 C3N-01766 UCEC miRNA-Seq tumor CPT0226810009 5b88a80c-5744-4eb4-bdfb-9a6b995e8bd7_mirnaseq_gdc_realn.bam 273896866 BAM harmonized CPTAC3 f33717b8-b9f7-47ca-ae53-5d19026f6cbb d3e4e140d83b9152eacc57e31936c1a7 {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.chimeric.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.chimeric.gdc_realn.bam 43968453 BAM chimeric harmonized CPTAC3 0417e391-932d-47fc-91fe-11b382ec56cc 86a32c47caad72ba789debc8bd2349ba {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.chimeric.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.chimeric.gdc_realn.bam 196626309 BAM chimeric harmonized CPTAC3 1af0c05d-d104-4a37-a89a-d2547a9e5b15 e5eba0e641bfa20280dab1b1ec4aa482 {"aliquot_tag": "ALQ_505fc036", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.genomic.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.genomic.gdc_realn.bam 9324855723 BAM genomic harmonized CPTAC3 2caedd36-ba6d-4445-9085-5d668e2d3ef6 8447721e5d936b4f56c0161a58cb2b7f {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.genomic.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.genomic.gdc_realn.bam 8598218707 BAM genomic harmonized CPTAC3 bd3c6ffc-35ee-42a4-b15a-53e75b8a969b 8eae8f401b11363d8187699282d2cc6b {"aliquot_tag": "ALQ_505fc036", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.S18_R1.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R1_001.fastq.gz 4762228461 FASTQ S18_R1 unaligned CPTAC3 9a32df43-fd9d-4be5-a69a-4f959fd990d0 53c5e766ba86e64556263a22210cea61 {"aliquot_tag": "ALQ_505fc036", "sample": "S18", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.S18_R2.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R2_001.fastq.gz 4920715927 FASTQ S18_R2 unaligned CPTAC3 e7e74d9a-b9a8-4753-84e1-f2bd2e3a0de7 8e15a18c69e004de4c36768573b2a4e9 {"aliquot_tag": "ALQ_505fc036", "sample": "S18", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.S5_L002_R1.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R1_001.fastq.gz 4432717655 FASTQ S5_L002_R1 unaligned CPTAC3 96ea3cfc-9e24-4903-8b33-6691b9ec934d 78af198e3b5de5ad51053b9c672ddd91 {"aliquot_tag": "ALQ_bf2b5675", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.S5_L002_R2.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R2_001.fastq.gz 5034965860 FASTQ S5_L002_R2 unaligned CPTAC3 d73c774d-aeb6-4a5f-a630-b3e85afa4ea0 0e40c2daeea4f559288819fd25809e34 {"aliquot_tag": "ALQ_bf2b5675", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.transcriptome.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.transcriptome.gdc_realn.bam 13325853441 BAM transcriptome harmonized CPTAC3 707adb18-7519-48cf-baec-945a6768213d 18b47a2d3631b32070dee097aed5d68b {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor"} -C3N-01766.RNA-Seq.transcriptome.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.transcriptome.gdc_realn.bam 3576817985 BAM transcriptome harmonized CPTAC3 2f6f34c4-93dc-4475-9d12-9a9650042ec4 fba52e75b213a8bf29b0fba61185528e {"aliquot_tag": "ALQ_505fc036", "gdc_sample_type": "Primary Tumor"} -C3N-01766.WGS.N C3N-01766 UCEC WGS blood_normal CPT0226850002 CPT0226850002.WholeGenome.RP-1303.bam 82934955171 BAM aligned CPTAC3 394ea969-87e2-491d-9dce-5d4c9c8f71d3 e7420d84b3a9f06c5bff0e7ff1958477 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01766.WGS.N.hg38 C3N-01766 UCEC WGS blood_normal CPT0226850002 6f28b44a-bb64-4651-947b-2e7eafd00ab3_wgs_gdc_realn.bam 121613866429 BAM harmonized CPTAC3 c5b9f037-f471-4978-8eff-814cc98f3ea1 416b91f8caf0d3d836b3a7219ae68125 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01766.WGS.T C3N-01766 UCEC WGS tumor CPT0226810006 CPT0226810006.WholeGenome.RP-1303.bam 77469750236 BAM aligned CPTAC3 b7838dbc-ed59-4c80-9b80-4e0207ec9e05 82438ce98b49833316d7701f1eae9ddc {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor"} -C3N-01766.WGS.T.hg38 C3N-01766 UCEC WGS tumor CPT0226810006 4f4f3cf5-ffc3-41e2-ab9a-3984f073b5f7_wgs_gdc_realn.bam 114104646184 BAM harmonized CPTAC3 2ab9be3a-77fb-4059-a8cc-713ae881d4f2 0a4d751bf1aa59211352409cc84874cc {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor"} -C3N-01766.WXS.N C3N-01766 UCEC WXS blood_normal CPT0226850002 CPT0226850002.WholeExome.RP-1303.bam 24505971695 BAM aligned CPTAC3 b35cf0fe-dfee-4e63-bdeb-70d34287df4f 31ff5a2a8cd71f70d7c7108830a96b95 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01766.WXS.N.hg38 C3N-01766 UCEC WXS blood_normal CPT0226850002 6f28b44a-bb64-4651-947b-2e7eafd00ab3_wxs_gdc_realn.bam 33456942947 BAM harmonized CPTAC3 88dd8f1d-7a97-4b47-98d6-b0a0b53380f5 abe1f16ee9d57aab9327f3bced3eb799 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01766.WXS.T C3N-01766 UCEC WXS tumor CPT0226810006 CPT0226810006.WholeExome.RP-1303.bam 21738243963 BAM aligned CPTAC3 1c2fb60c-d18e-41ef-aaec-ca640f8ca730 efbfd63ff1259e72674d8e0bd56bc726 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor"} -C3N-01766.WXS.T.hg38 C3N-01766 UCEC WXS tumor CPT0226810006 4f4f3cf5-ffc3-41e2-ab9a-3984f073b5f7_wxs_gdc_realn.bam 30761691966 BAM harmonized CPTAC3 ae0dcf17-addf-47a6-a2d8-2a9650771226 eb71facc97ffcce7456463c7c8096347 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor"} -C3N-01767.MethArray.Green.A C3N-01767 LSCC Methylation_Array tissue_normal CPT0321470006 204367490056_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 08cc00ad-399e-4b3f-8cdb-9d28b233cb49 f24187d4dbfbb271031ffeefc090711c {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.MethArray.Green.T C3N-01767 LSCC Methylation_Array tumor CPT0321460006 204372030024_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 24e130f4-f60e-4316-9ac2-90c427d67323 a707c25eebaadbc65c8bd9a1e3cb5d72 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor"} -C3N-01767.MethArray.Red.A C3N-01767 LSCC Methylation_Array tissue_normal CPT0321470006 204367490056_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 a7b354f0-b0a4-4bf5-8416-d1804190cc19 3be372212ce3bb51dbe6abccd75de102 {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.MethArray.Red.T C3N-01767 LSCC Methylation_Array tumor CPT0321460006 204372030024_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 b086203f-5e95-4bda-be3b-dcbd4acdac52 54511cba8eec87acaf35a0c1492b0cac {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor"} -C3N-01767.miRNA-Seq.A.hg38 C3N-01767 LSCC miRNA-Seq tissue_normal CPT0321470009 e360e895-68bd-4ef5-9780-3b07527fc228_mirnaseq_gdc_realn.bam 313238192 BAM harmonized CPTAC3 a753b8ab-c463-41b2-a0fa-3a8a7123294c 1ab9aca17f50929d4978c04adb24fc05 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.miRNA-Seq.S25_L006_R1.A C3N-01767 LSCC miRNA-Seq tissue_normal CPT0321470009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACTGAT_S25_L006_R1_001.unaln.bam 278939064 BAM S25_L006_R1 unaligned CPTAC3 ec2b8d1c-1290-42fa-a133-f786a034f01e c0f3c68bdf67553490b2364cc25b5f63 {"aliquot_tag": "ALQ_95754963", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.miRNA-Seq.S39_L007_R1.T C3N-01767 LSCC miRNA-Seq tumor CPT0321460009 200224_UNC31-K00269_0267_AHC722BBXY_CTATAC_S39_L007_R1_001.unaln.bam 258536181 BAM S39_L007_R1 unaligned CPTAC3 43f32783-e121-4131-8b10-f820dc9fd5c0 ab757d90de6f2a8416c26fa518a1a7f2 {"aliquot_tag": "ALQ_a81560d3", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01767.miRNA-Seq.T.hg38 C3N-01767 LSCC miRNA-Seq tumor CPT0321460009 f0af4d65-0e5f-4c86-a4e3-c4c5c44c421a_mirnaseq_gdc_realn.bam 284784513 BAM harmonized CPTAC3 ecd1b0b5-cc41-48d6-9c10-f23561dd527e 4e55bcf89f2fd8c9fc5394589c11c782 {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor"} -C3N-01767.RNA-Seq.chimeric.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.chimeric.gdc_realn.bam 33925985 BAM chimeric harmonized CPTAC3 fa79127d-7b38-462c-a094-ea8ab273ad1b 438d0aecdb9959a71d0de14202c33279 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.RNA-Seq.chimeric.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.chimeric.gdc_realn.bam 31511557 BAM chimeric harmonized CPTAC3 4ec44176-b2b8-4ddf-a863-34046bde3e48 24b7d96de2ff49207920b176c34faa40 {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor"} -C3N-01767.RNA-Seq.genomic.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.genomic.gdc_realn.bam 8916162768 BAM genomic harmonized CPTAC3 13313071-c774-44c1-851c-4f05df948601 a275bc5537828c60c795e81e90c01832 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.RNA-Seq.genomic.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.genomic.gdc_realn.bam 7070266928 BAM genomic harmonized CPTAC3 b70f7d5d-627f-4b91-a408-fa8a8a3d32ea 2ca5237e584f8cee999ccdcbe83f30cb {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor"} -C3N-01767.RNA-Seq.S7_L002_R1.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 3420470899 FASTQ S7_L002_R1 unaligned CPTAC3 8e79de30-7b3c-4716-b4f2-7eca97352547 64abf5b9368846b4191203bb6617d998 {"aliquot_tag": "ALQ_a81560d3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01767.RNA-Seq.S7_L002_R2.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3642460227 FASTQ S7_L002_R2 unaligned CPTAC3 042d2e89-2d28-425c-ae7e-dd4dd80bddfb 0f084b9c0e332889b702561a41e8b899 {"aliquot_tag": "ALQ_a81560d3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01767.RNA-Seq.S9_L003_R1.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4084108636 FASTQ S9_L003_R1 unaligned CPTAC3 649a1980-a6d2-4dd1-b29b-9d8943d41ace a756295953018fad461666f270017c24 {"aliquot_tag": "ALQ_95754963", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.RNA-Seq.S9_L003_R2.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4909628844 FASTQ S9_L003_R2 unaligned CPTAC3 866d1256-d6bb-4aa0-b5ea-16a2843410a7 65ebe2c7789838337e16ecb3d3fd7afb {"aliquot_tag": "ALQ_95754963", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.RNA-Seq.transcriptome.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.transcriptome.gdc_realn.bam 10431757555 BAM transcriptome harmonized CPTAC3 4bb9e270-1058-4034-8656-0b8232d9ac21 4e35c0cfc2f900581bedcfb2d32c4cf0 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.RNA-Seq.transcriptome.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.transcriptome.gdc_realn.bam 9277800609 BAM transcriptome harmonized CPTAC3 745b5169-edc5-40bf-b505-a048d4ac489a 0170212fb4e3c7c8767a1855079104d1 {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor"} -C3N-01767.WGS.N C3N-01767 LSCC WGS blood_normal CPT0321500002 CPT0321500002.WholeGenome.RP-2158.bam 24317652446 BAM aligned CPTAC3 f660ff25-e13c-48d7-acf0-cc6968325f7d 9766f0a94e538c39524668c7eee6ad32 {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01767.WGS.N.hg38 C3N-01767 LSCC WGS blood_normal CPT0321500002 d776e407-5302-45a0-8132-f5cb9827057b_wgs_gdc_realn.bam 72917295191 BAM harmonized CPTAC3 6014ac1c-0e43-4639-a4da-aa11ee71e8c7 4cef20d16ba33cbfa0120cfe3617969e {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01767.WGS.T C3N-01767 LSCC WGS tumor CPT0321460006 CPT0321460006.WholeGenome.RP-2158.bam 22854197072 BAM aligned CPTAC3 bc0adb67-11b6-4526-b5c8-64c0e05bf0e9 8137c2a0059101b87aeab5a737569d4e {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor"} -C3N-01767.WGS.T.hg38 C3N-01767 LSCC WGS tumor CPT0321460006 8f5b7ba8-7564-4f6d-96ce-a72930454080_wgs_gdc_realn.bam 68948306476 BAM harmonized CPTAC3 960c774f-e227-4cc5-a62f-3922d196bfa1 ec05f1cfbdbdec9df1d5908d94e2a4f9 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor"} -C3N-01767.WXS.A C3N-01767 LSCC WXS tissue_normal CPT0321470006 CPT0321470006.WholeExome.RP-1303.bam 22938170291 BAM aligned CPTAC3 6e91b34a-4caf-434f-a558-396275315354 e584054d4fad61e5f24688c9ade28fe9 {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.WXS.A.hg38 C3N-01767 LSCC WXS tissue_normal CPT0321470006 c03e6a56-4b54-4110-a0ef-30ffafdb87d6_wxs_gdc_realn.bam 32206591894 BAM harmonized CPTAC3 76d652af-cabd-468b-bd01-e68a4990d106 dd8f458537919602add5b14580622482 {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01767.WXS.N C3N-01767 LSCC WXS blood_normal CPT0321500002 CPT0321500002.WholeExome.RP-1303.bam 19290589678 BAM aligned CPTAC3 f5020bcd-0fb3-4806-800e-164344ccc621 2f1c84b94012a277a9fa4284bc9c6cac {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01767.WXS.N.hg38 C3N-01767 LSCC WXS blood_normal CPT0321500002 d776e407-5302-45a0-8132-f5cb9827057b_wxs_gdc_realn.bam 26155568849 BAM harmonized CPTAC3 4eca83e0-453b-4ef4-b6fb-adbea829f224 a96adc79a1c9e17682dff49851504210 {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01767.WXS.T C3N-01767 LSCC WXS tumor CPT0321460006 CPT0321460006.WholeExome.RP-1303.bam 21197047234 BAM aligned CPTAC3 56e689fd-433a-4531-94c9-d02a45ea1fd3 1f115af38dd62cd9549ce374c802b3f8 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor"} -C3N-01767.WXS.T.hg38 C3N-01767 LSCC WXS tumor CPT0321460006 8f5b7ba8-7564-4f6d-96ce-a72930454080_wxs_gdc_realn.bam 28847554983 BAM harmonized CPTAC3 2d7deeec-610d-400b-87b2-8192c8f5e45b 77190c1d2e6c0cd72dd59f5a73f84895 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor"} -C3N-01768.MethArray.Green.A C3N-01768 LSCC Methylation_Array tissue_normal CPT0321520007 204372030106_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9feecee2-5cbc-4ca6-ae76-0fc7332781a4 b14eec3b793a08310d6f2b46a48593fc {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.MethArray.Green.T C3N-01768 LSCC Methylation_Array tumor CPT0321510006 204367490093_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e2174935-b01b-4222-9abb-370431b0a62c f94fe5a62809a1903fa7a179c4c7c38b {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor"} -C3N-01768.MethArray.Red.A C3N-01768 LSCC Methylation_Array tissue_normal CPT0321520007 204372030106_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 8dbe97f4-0232-48c5-a1ad-9f76382642c5 4232e3e9b4282732940e7371a3e02f02 {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.MethArray.Red.T C3N-01768 LSCC Methylation_Array tumor CPT0321510006 204367490093_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 a3f38dcb-3122-4f7e-b332-8ca848aaadd4 68e1d41fd2c0bd9a3d239d47d997d20f {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor"} -C3N-01768.miRNA-Seq.A.hg38 C3N-01768 LSCC miRNA-Seq tissue_normal CPT0321520010 c4737c06-9e08-487e-9e38-137ec9218e86_mirnaseq_gdc_realn.bam 204664640 BAM harmonized CPTAC3 ebbe7a21-f275-4170-822f-e9ff333c0133 9a36a20090a25cccfed4c3fe52b71d19 {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.miRNA-Seq.S40_L007_R1.T C3N-01768 LSCC miRNA-Seq tumor CPT0321510009 200224_UNC31-K00269_0267_AHC722BBXY_CTCAGA_S40_L007_R1_001.unaln.bam 151075223 BAM S40_L007_R1 unaligned CPTAC3 850ca6cc-a1ed-4bb9-bd94-fc7215eed4e4 13e97484417a5f35c4b6fc467fe195d2 {"aliquot_tag": "ALQ_d1696f66", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01768.miRNA-Seq.S9_L001_R1.A C3N-01768 LSCC miRNA-Seq tissue_normal CPT0321520010 200325_UNC31-K00269_0272_AHHC2NBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 181632693 BAM S9_L001_R1 unaligned CPTAC3 668f6789-5615-4c75-84ec-44a7b65d8298 02322da7a77bca3c6554a26d6c96ec93 {"aliquot_tag": "ALQ_f60e9c53", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.miRNA-Seq.T.hg38 C3N-01768 LSCC miRNA-Seq tumor CPT0321510009 25be4b4d-bfa8-416c-970c-16dd372a22ed_mirnaseq_gdc_realn.bam 170089882 BAM harmonized CPTAC3 c6afc43e-da34-4a31-87c3-92f45bf35687 457ea2afc50a01438493951f210957eb {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor"} -C3N-01768.RNA-Seq.chimeric.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.chimeric.gdc_realn.bam 120482408 BAM chimeric harmonized CPTAC3 b110980b-23b1-4d8a-b569-24d898cfafa0 c8fd60ab5d8e5ef874ea0ca6b5853e7a {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.RNA-Seq.chimeric.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.chimeric.gdc_realn.bam 37336376 BAM chimeric harmonized CPTAC3 acb17395-3682-45e7-a24b-47bd9269f848 68ca98209ffb24a0c6ef682491570721 {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor"} -C3N-01768.RNA-Seq.genomic.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.genomic.gdc_realn.bam 7569369780 BAM genomic harmonized CPTAC3 80719a2e-d37a-49e8-b5dc-9d3dee64099d 9c4e2f8f96e301b990fc7834fbc23b5d {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.RNA-Seq.genomic.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.genomic.gdc_realn.bam 8461332705 BAM genomic harmonized CPTAC3 f505a6d2-3821-4437-927d-2d17617650e2 9d2a56492a7ace23725e8b1acca31859 {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor"} -C3N-01768.RNA-Seq.S17_L005_R1.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R1_001.fastq.gz 3904926175 FASTQ S17_L005_R1 unaligned CPTAC3 ff49099c-84c9-4b43-95bf-cf49d08c1306 6f98e4ee3927dd6af509fb4dc5576347 {"aliquot_tag": "ALQ_f60e9c53", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.RNA-Seq.S17_L005_R2.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R2_001.fastq.gz 4082260248 FASTQ S17_L005_R2 unaligned CPTAC3 658408cb-4d41-4938-860a-475a8db3c829 09986d67ee3293301a20edbc47d302a4 {"aliquot_tag": "ALQ_f60e9c53", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.RNA-Seq.S8_L002_R1.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R1_001.fastq.gz 4086471599 FASTQ S8_L002_R1 unaligned CPTAC3 7ccc431f-666a-4768-9062-f988c0d3d0fb a32f6ea1e7e76e61205f3d361dc48d7c {"aliquot_tag": "ALQ_d1696f66", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01768.RNA-Seq.S8_L002_R2.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R2_001.fastq.gz 4332523665 FASTQ S8_L002_R2 unaligned CPTAC3 80d49158-38aa-452a-aec9-2639d913b7bd 01da92f2ce0431abfff337d2d37bb41a {"aliquot_tag": "ALQ_d1696f66", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01768.RNA-Seq.transcriptome.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.transcriptome.gdc_realn.bam 10787624770 BAM transcriptome harmonized CPTAC3 258e5a2c-b73d-4773-afb2-9d39b38f41fe 24df92ba37b8c8a0478002751e3ab8fd {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.RNA-Seq.transcriptome.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.transcriptome.gdc_realn.bam 10366381465 BAM transcriptome harmonized CPTAC3 033a9686-ce95-4baf-a083-61fcbf318097 5a1ea746fde43864615d140403317c8c {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor"} -C3N-01768.WGS.N C3N-01768 LSCC WGS blood_normal CPT0321570002 CPT0321570002.WholeGenome.RP-2158.bam 31767677160 BAM aligned CPTAC3 2225e00f-81ea-45c2-bffb-bd2bee203423 3288289cbe0cca73174ffbe7d30ae507 {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01768.WGS.N.hg38 C3N-01768 LSCC WGS blood_normal CPT0321570002 886127a1-cd4e-4529-aef1-8f1d1c4c0b45_wgs_gdc_realn.bam 93088951602 BAM harmonized CPTAC3 2891e61e-9bd9-4d13-9464-8f400cf56e48 442d2f7bdd94803a12e7586f655e8117 {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01768.WGS.T C3N-01768 LSCC WGS tumor CPT0321510006 CPT0321510006.WholeGenome.RP-2158.bam 24801840088 BAM aligned CPTAC3 427d9252-69b5-4f48-8323-a719765e3780 d0cdfa7b5bbfd513708f5587bb07e499 {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor"} -C3N-01768.WGS.T.hg38 C3N-01768 LSCC WGS tumor CPT0321510006 a4ebedaa-1f18-4ae2-9780-4c700c702a5f_wgs_gdc_realn.bam 72094930863 BAM harmonized CPTAC3 1692c0c9-db04-4436-b4c8-8f1fc8bb0947 8010d13a1ef2c90237696e12791332d2 {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor"} -C3N-01768.WXS.A C3N-01768 LSCC WXS tissue_normal CPT0321520007 CPT0321520007.WholeExome.RP-1303.bam 24024487355 BAM aligned CPTAC3 0f16c9f0-6a94-4352-b978-a2acbb8d6af3 6a9c1952da48b904f38dcb3922d26bb9 {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.WXS.A.hg38 C3N-01768 LSCC WXS tissue_normal CPT0321520007 e14eb7fa-9a3a-4d87-87ee-697063479156_wxs_gdc_realn.bam 33673883749 BAM harmonized CPTAC3 8d466de6-829e-4f64-9483-102bf43d4c08 821a1f6811b389cd20a840dddd1366fb {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01768.WXS.N C3N-01768 LSCC WXS blood_normal CPT0321570002 CPT0321570002.WholeExome.RP-1303.bam 35584360083 BAM aligned CPTAC3 cf36e13e-9476-49aa-aa72-a810535926e7 e87a46c9f85943008f5e8d89dc1355b3 {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01768.WXS.N.hg38 C3N-01768 LSCC WXS blood_normal CPT0321570002 886127a1-cd4e-4529-aef1-8f1d1c4c0b45_wxs_gdc_realn.bam 49030851757 BAM harmonized CPTAC3 989a5a4b-53a7-4a48-adf6-f346309c32fe e1b178b0c446c433a931ac64e591370b {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01768.WXS.T C3N-01768 LSCC WXS tumor CPT0321510006 CPT0321510006.WholeExome.RP-1303.bam 18164610686 BAM aligned CPTAC3 dba9ef64-cfa3-4345-9a44-c41d8b687b44 2b918eb9879fc4a993f8a7eefdd3f0d3 {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor"} -C3N-01768.WXS.T.hg38 C3N-01768 LSCC WXS tumor CPT0321510006 a4ebedaa-1f18-4ae2-9780-4c700c702a5f_wxs_gdc_realn.bam 25217341655 BAM harmonized CPTAC3 69781335-91fe-4811-a1b2-c6ad27bd1d46 b1e18b51e8d67ae7cbec3e72f8b54eca {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor"} -C3N-01798.MethArray.Green.T C3N-01798 GBM Methylation_Array tumor CPT0167750007 203028200014_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc649119-3be9-4de6-b57d-1ab40e143a24 6d3adfe2db97ad37c17977c8239ed174 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor"} -C3N-01798.MethArray.Red.T C3N-01798 GBM Methylation_Array tumor CPT0167750007 203028200014_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 38e560da-cfc0-48fc-a066-666ad7f58db6 e862d5d1e0291504e37815cdeb8f1ee5 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor"} -C3N-01798.miRNA-Seq.S5_L001_R1.T C3N-01798 GBM miRNA-Seq tumor CPT0167750010 181119_UNC31-K00269_0165_AH27WCBBXY_CAACTA_S5_L001_R1_001.unaln.bam 263490816 BAM S5_L001_R1 unaligned CPTAC3 53add06a-ea43-4035-a718-280278f6f028 7667813e001e634b79d977f82d829e2c {"aliquot_tag": "ALQ_c08af20e", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01798.miRNA-Seq.T.hg38 C3N-01798 GBM miRNA-Seq tumor CPT0167750010 93a0b5a3-e60b-4b0b-a685-14c3078c0b6d_mirnaseq_gdc_realn.bam 294984219 BAM harmonized CPTAC3 ff1f1f8d-9ff4-42b3-ad0a-b80809484cb9 2a88d26cb19b6c18eb9751fd0d81b905 {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor"} -C3N-01798.RNA-Seq.chimeric.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.chimeric.gdc_realn.bam 33436135 BAM chimeric harmonized CPTAC3 df649b81-3315-46d5-8318-95786672ecf7 96827591ef3977c2ca86b2f719c7f2fd {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor"} -C3N-01798.RNA-Seq.genomic.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.genomic.gdc_realn.bam 9124055049 BAM genomic harmonized CPTAC3 f2dc7610-c8b6-4417-b2c4-d4cca11dbceb 2aa30fee85485b075db79d395a8de51c {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor"} -C3N-01798.RNA-Seq.S15_L004_R1.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 4180544485 FASTQ S15_L004_R1 unaligned CPTAC3 005e5a7c-4809-472d-8819-a25f7833a631 8fce60e163e7de9232649f05a85bdd02 {"aliquot_tag": "ALQ_c08af20e", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01798.RNA-Seq.S15_L004_R2.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4540740441 FASTQ S15_L004_R2 unaligned CPTAC3 bbf5b3a8-d267-4999-8a95-583d264a55d8 8d38031042ed03df428e0bb48aaa6556 {"aliquot_tag": "ALQ_c08af20e", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01798.RNA-Seq.transcriptome.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.transcriptome.gdc_realn.bam 11175709099 BAM transcriptome harmonized CPTAC3 ecb795bc-6215-4f5d-a81d-d6ceb01603c0 0b52dd193bd70d0ae0748a99ad00f100 {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor"} -C3N-01798.scRNA-Seq.S3_L001_R1.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R1_001.fastq.gz 11173530187 FASTQ S3_L001_R1 unaligned CPTAC3 39077fc2-1010-4e46-b6d7-04f14957584c cfe99402393be7dfdbb562072fb446b7 {"aliquot_tag": "ALQ_b0e00681", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01798.scRNA-Seq.S3_L001_R2.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R2_001.fastq.gz 26931565159 FASTQ S3_L001_R2 unaligned CPTAC3 c5b9e968-afcd-413b-b96c-38ccf550950f f6598c0caa7560c9006b132d515e1295 {"aliquot_tag": "ALQ_b0e00681", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01798.scRNA-Seq.T.hg38 C3N-01798 GBM scRNA-Seq tumor CPT0167750015 possorted_genome_bam.bam 32346182334 BAM harmonized CPTAC3 a72c6a09-a388-4146-81b1-35161b7e952d a399407ab72dbf08fc883f35e7af53a4 {"aliquot_tag": "ALQ_b0e00681", "gdc_sample_type": "Primary Tumor"} -C3N-01798.WGS.N C3N-01798 GBM WGS blood_normal CPT0167810002 CPT0167810002.WholeGenome.RP-1303.bam 67516152886 BAM aligned CPTAC3 842ab574-e778-41d8-9999-5f5bdbf239dc e42d563bae88ec65ce0b0377b03ea51d {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal"} -C3N-01798.WGS.N.hg38 C3N-01798 GBM WGS blood_normal CPT0167810002 3fe573bd-7595-4c87-8006-ae55bfb46f6d_wgs_gdc_realn.bam 97251429797 BAM harmonized CPTAC3 eabb8aaa-0339-4d65-828a-4c144da9442d 5ab6c6a438f55908bb3b16bdae6126bb {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal"} -C3N-01798.WGS.T C3N-01798 GBM WGS tumor CPT0167750007 CPT0167750007.WholeGenome.RP-1303.bam 67719339828 BAM aligned CPTAC3 0ec21406-e51f-4958-a0aa-583cd64a81d2 b919db9dcd3c6a9832766e7399879228 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor"} -C3N-01798.WGS.T.hg38 C3N-01798 GBM WGS tumor CPT0167750007 6a86b0fc-bb6a-4dca-9e8c-32aa9d36e020_wgs_gdc_realn.bam 99552056200 BAM harmonized CPTAC3 b0f9efa7-91ee-4fb1-b03a-5472c3eb6957 125025949448b41db7df77a8d5c7521e {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor"} -C3N-01798.WXS.N C3N-01798 GBM WXS blood_normal CPT0167810002 CPT0167810002.WholeExome.RP-1303.bam 23810090159 BAM aligned CPTAC3 a1acc44e-f580-46a3-b5f9-41bd4b323a43 8c99cf4934e23fb8049146841fd83c00 {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal"} -C3N-01798.WXS.N.hg38 C3N-01798 GBM WXS blood_normal CPT0167810002 3fe573bd-7595-4c87-8006-ae55bfb46f6d_wxs_gdc_realn.bam 32396041287 BAM harmonized CPTAC3 f9976b08-ef67-4a39-95ad-5c5a47a4ab4a acb7b1cbd99af47664c072bcb59cd784 {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal"} -C3N-01798.WXS.T C3N-01798 GBM WXS tumor CPT0167750007 CPT0167750007.WholeExome.RP-1303.bam 20526333458 BAM aligned CPTAC3 5af3f567-b24e-4751-9348-df114ca852c2 82afe9fe33e563cb6164a970a6abc86c {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor"} -C3N-01798.WXS.T.hg38 C3N-01798 GBM WXS tumor CPT0167750007 6a86b0fc-bb6a-4dca-9e8c-32aa9d36e020_wxs_gdc_realn.bam 27884846124 BAM harmonized CPTAC3 d8d603aa-6b17-4e01-8b38-78cfb3047118 f9665a78f13e4ba5aed0f3e3c56f1523 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor"} -C3N-01799.MethArray.Green.A C3N-01799 LUAD Methylation_Array tissue_normal CPT0089360009 203027380028_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 599f1b8f-e3ea-4bed-a548-6d0c777de0e9 4e3290051ac88c6b872b73e6d7449572 {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.MethArray.Green.T C3N-01799 LUAD Methylation_Array tumor CPT0089340009 202234380061_R08C01_Grn.idat 13676233 IDAT Green NA CPTAC3 ddc6b27a-3420-40df-a9a7-677236ddd882 fd89bf24704d3d8d2ff0d80dc4e63652 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor"} -C3N-01799.MethArray.Red.A C3N-01799 LUAD Methylation_Array tissue_normal CPT0089360009 203027380028_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 4ccae785-614c-443f-8db4-922661398e69 bebe7ae3e66f71d1ec1680aa7e5736a9 {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.MethArray.Red.T C3N-01799 LUAD Methylation_Array tumor CPT0089340009 202234380061_R08C01_Red.idat 13676233 IDAT Red NA CPTAC3 ce7d815a-24d9-44c4-9988-3a67a37aca41 a630e39383743e2b3a1cc882928d0fc8 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor"} -C3N-01799.miRNA-Seq.A.hg38 C3N-01799 LUAD miRNA-Seq tissue_normal CPT0089360006 2fa7d37b-74a4-4358-834a-dfedaf4d4787_mirnaseq_gdc_realn.bam 218365642 BAM harmonized CPTAC3 4a2389c0-5ad7-44f3-86b8-539841de1ab7 b79fd41a07dd7d24597af9fede8a09f1 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.miRNA-Seq.S31_L003_R1.T C3N-01799 LUAD miRNA-Seq tumor CPT0089340006 181119_UNC31-K00269_0165_AH27WCBBXY_CAGATC_S31_L003_R1_001.unaln.bam 247898241 BAM S31_L003_R1 unaligned CPTAC3 fa8c2252-649e-4845-9aea-da9164e81dde f6367f3e1f479425b8136fee619fbefa {"aliquot_tag": "ALQ_c4cd70f0", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01799.miRNA-Seq.S4_L005_R1.A C3N-01799 LUAD miRNA-Seq tissue_normal CPT0089360006 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L005_R1_001.unaln.bam 192930755 BAM S4_L005_R1 unaligned CPTAC3 849ada41-dd55-4618-ab16-a4046fd61722 496392bd7da2c6cf43f274e993382b4f {"aliquot_tag": "ALQ_be0d2390", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.miRNA-Seq.T.hg38 C3N-01799 LUAD miRNA-Seq tumor CPT0089340006 0548c5e7-1752-4d97-9f14-35b2ec33a66a_mirnaseq_gdc_realn.bam 268907903 BAM harmonized CPTAC3 47f6e3f8-dc1a-4650-8396-209412843431 2685eff92c0983b3fc60141e3129fb38 {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor"} -C3N-01799.RNA-Seq.chimeric.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.chimeric.gdc_realn.bam 77771243 BAM chimeric harmonized CPTAC3 f64708f9-4e8d-4cf6-9bf1-695c986ebaf3 2fc5dec7b209c3b7a88b6a97170154b9 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.RNA-Seq.chimeric.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.chimeric.gdc_realn.bam 98767640 BAM chimeric harmonized CPTAC3 d1218bcf-21ae-4fa8-a479-40053817a5ac ede8aeaa474ac71f643869df57d5ba50 {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor"} -C3N-01799.RNA-Seq.genomic.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.genomic.gdc_realn.bam 8557746792 BAM genomic harmonized CPTAC3 7029493f-dca9-489f-a6d8-6dce457bd2c7 02ed0ab4380cd0354b7458f5e99e7848 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.RNA-Seq.genomic.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.genomic.gdc_realn.bam 9884502257 BAM genomic harmonized CPTAC3 3bc94e13-e05d-445c-8e40-56e0528c6f0a 391debbdb174037c2492a405f5f287b4 {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor"} -C3N-01799.RNA-Seq.S20_L005_R1.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4265498706 FASTQ S20_L005_R1 unaligned CPTAC3 8c879f0f-6ff0-4ec4-a046-e7dbfae29568 08bf6eec1749e2ba6d2c3c5cb7ad39af {"aliquot_tag": "ALQ_be0d2390", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.RNA-Seq.S20_L005_R2.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4393858109 FASTQ S20_L005_R2 unaligned CPTAC3 84d28597-e5a3-45b9-84cc-7b365728175a 218444c6cf389acf2835a4d1621e6c94 {"aliquot_tag": "ALQ_be0d2390", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.RNA-Seq.S4_L001_R1.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R1_001.fastq.gz 4278461848 FASTQ S4_L001_R1 unaligned CPTAC3 2e828388-091a-4362-a141-d6849d21224b e6fb2f55770ff46abd38afa96d7e4386 {"aliquot_tag": "ALQ_c4cd70f0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01799.RNA-Seq.S4_L001_R2.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4568947945 FASTQ S4_L001_R2 unaligned CPTAC3 737e0b9e-3029-4ebe-a3c1-ca9b807072e5 da86d6a76214fe19634c4d6e364322d5 {"aliquot_tag": "ALQ_c4cd70f0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01799.RNA-Seq.transcriptome.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.transcriptome.gdc_realn.bam 9871552828 BAM transcriptome harmonized CPTAC3 809b8c20-5ea4-4656-807c-d1099456fcf6 52af17007a5c875efd728efa185f1ec6 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.RNA-Seq.transcriptome.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.transcriptome.gdc_realn.bam 9249690365 BAM transcriptome harmonized CPTAC3 d3ef56d6-ab93-43d5-a6b9-1256d0f4b814 b86c0f6f04527b54ea1031c88db037dd {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor"} -C3N-01799.WGS.A C3N-01799 LUAD WGS tissue_normal CPT0089360009 CPT0089360009.WholeGenome.RP-1303.bam 53843619893 BAM aligned CPTAC3 f9bb6fce-6c40-4fb7-a3a3-b984eab44106 c935879677922fe2be6c4983e222dd1f {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.WGS.A.hg38 C3N-01799 LUAD WGS tissue_normal CPT0089360009 ae11e403-c9c4-48e5-b4f0-ad6495db67cf_wgs_gdc_realn.bam 78828347607 BAM harmonized CPTAC3 b55a4c81-a8b6-4394-a388-4ed041f5c5c1 b08d2fbfb4f7e4226d54763b01e5f6fb {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.WGS.N C3N-01799 LUAD WGS blood_normal CPT0091320002 CPT0091320002.WholeGenome.RP-1303.bam 58434239583 BAM aligned CPTAC3 37967db6-0a05-410e-9f1c-9aa0ec8260c6 25545f690548bf78d98da8728d1701c2 {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01799.WGS.N.hg38 C3N-01799 LUAD WGS blood_normal CPT0091320002 680fb7ef-3c8a-4c38-9218-50fba1f412a1_wgs_gdc_realn.bam 87494110206 BAM harmonized CPTAC3 a01696bd-4e49-45a2-80ae-7382ea01ac28 a1823fb2f6ad0db0550d1a60cde3c264 {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01799.WGS.T C3N-01799 LUAD WGS tumor CPT0089340009 CPT0089340009.WholeGenome.RP-1303.bam 62465277556 BAM aligned CPTAC3 da676615-14fd-4512-b384-2087b90c936b 197d200dbac264e3234e0b5e18f29449 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor"} -C3N-01799.WGS.T.hg38 C3N-01799 LUAD WGS tumor CPT0089340009 51034358-c855-496f-96f4-28b8ecad1da1_wgs_gdc_realn.bam 92519009870 BAM harmonized CPTAC3 ba1cb76d-87b5-4184-9c26-9f5721a2003a 715c9598ab48ef03b97a45977abb164d {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor"} -C3N-01799.WXS.A C3N-01799 LUAD WXS tissue_normal CPT0089360009 CPT0089360009.WholeExome.RP-1303.bam 37200967468 BAM aligned CPTAC3 9f7b2994-6143-4d99-988b-04a636332451 02e8b454635ff00180103bade48639dd {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.WXS.A.hg38 C3N-01799 LUAD WXS tissue_normal CPT0089360009 ae11e403-c9c4-48e5-b4f0-ad6495db67cf_wxs_gdc_realn.bam 49796966179 BAM harmonized CPTAC3 55b8ca66-dddb-4a1b-8645-4bad0f9b963c d19a3d38529a6a157a81c4bacada09ca {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01799.WXS.N C3N-01799 LUAD WXS blood_normal CPT0091320002 CPT0091320002.WholeExome.RP-1303.bam 29204639238 BAM aligned CPTAC3 48fecd1e-489d-4ac5-a520-6fbb212dedf5 f3a9ddda4b77cdda3bbea0c1ddd2f88d {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01799.WXS.N.hg38 C3N-01799 LUAD WXS blood_normal CPT0091320002 680fb7ef-3c8a-4c38-9218-50fba1f412a1_wxs_gdc_realn.bam 38756308494 BAM harmonized CPTAC3 1dea8e0f-ecf3-48a8-938a-356eaeb0bf76 af555d85e80e5f2799f4df754223c675 {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01799.WXS.T C3N-01799 LUAD WXS tumor CPT0089340009 CPT0089340009.WholeExome.RP-1303.bam 41167587286 BAM aligned CPTAC3 e7e4fa5c-dc9c-4cbf-85b8-44bf7170f3cb 2afae23ff26689448469b3ac7fa21720 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor"} -C3N-01799.WXS.T.hg38 C3N-01799 LUAD WXS tumor CPT0089340009 51034358-c855-496f-96f4-28b8ecad1da1_wxs_gdc_realn.bam 55137442882 BAM harmonized CPTAC3 ea3614f9-cb20-412e-8029-564d1904fbf2 c05e445a1797b4b1a119046c4f28dcc1 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor"} -C3N-01802.MethArray.Green.T C3N-01802 UCEC Methylation_Array tumor CPT0080030009 202184900128_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 4a471bb4-c141-4a99-a947-037963df6156 42b445f9f2287393dc2260d54ff1ec56 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor"} -C3N-01802.MethArray.Red.T C3N-01802 UCEC Methylation_Array tumor CPT0080030009 202184900128_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 70fc20e7-155a-45c2-9c3d-090fc2b41851 e249960ee73b4b8532a06df94f23dfe8 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor"} -C3N-01802.miRNA-Seq.S15_L001_R1.T C3N-01802 UCEC miRNA-Seq tumor CPT0080030006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L001_R1_001.unaln.bam 164014778 BAM S15_L001_R1 unaligned CPTAC3 4f6226a0-7276-41bf-9f3f-50ed0c782036 212d9d3a67e1d0940b0bc34b176d0e10 {"aliquot_tag": "ALQ_65e19b9d", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01802.miRNA-Seq.T.hg38 C3N-01802 UCEC miRNA-Seq tumor CPT0080030006 a14d4e70-72e3-48a8-ad26-182fa764b880_mirnaseq_gdc_realn.bam 182574657 BAM harmonized CPTAC3 7863a45f-d1de-4f99-b163-60504fe25ce7 0bc1855aa24fabb79b61862651de5d8c {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.chimeric.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.chimeric.gdc_realn.bam 40385468 BAM chimeric harmonized CPTAC3 3cb1a09a-4486-46af-a1d4-d7a258f5a16d 853ecca9b5f26bbbd07b445514a79b08 {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.chimeric.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.chimeric.gdc_realn.bam 140822640 BAM chimeric harmonized CPTAC3 e0a10d62-8602-41a1-aafe-d0b5cb1b2a4c ed334aa9e85a7d09e4abe1eecf71b6c4 {"aliquot_tag": "ALQ_74c5fb9e", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.genomic.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.genomic.gdc_realn.bam 9189877272 BAM genomic harmonized CPTAC3 aed7686c-dbfd-48b5-9201-24a2d74a9cc6 eebd615da0bc1de8f2ec1e719ef707ab {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.genomic.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.genomic.gdc_realn.bam 11026207218 BAM genomic harmonized CPTAC3 fe58fb9b-723d-40cb-a142-ff9e755a2e0a b89c212f721a272574c770adf70baaa2 {"aliquot_tag": "ALQ_74c5fb9e", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.S16_L004_R1.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4415765799 FASTQ S16_L004_R1 unaligned CPTAC3 06944ccc-05d4-42d9-917f-3e3e86355149 ec1309b9e47af72489bb4eea7cd0ceb2 {"aliquot_tag": "ALQ_65e19b9d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.S16_L004_R2.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4625364899 FASTQ S16_L004_R2 unaligned CPTAC3 6820bed8-165e-49af-bfeb-3cd127060651 3dd896aa5793720ede5065249ad13f41 {"aliquot_tag": "ALQ_65e19b9d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.S16_R1.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R1_001.fastq.gz 6163519789 FASTQ S16_R1 unaligned CPTAC3 b3b63880-a5f9-4310-bffc-cbcbedb9fe2f 6f871c085cb09718db358594aab8cfbd {"aliquot_tag": "ALQ_74c5fb9e", "sample": "S16", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.S16_R2.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R2_001.fastq.gz 6433473055 FASTQ S16_R2 unaligned CPTAC3 eebc17b7-00db-482a-a4e2-aadc74ec2778 cc6e98f8e0c3093500a84a722facdd03 {"aliquot_tag": "ALQ_74c5fb9e", "sample": "S16", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.transcriptome.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.transcriptome.gdc_realn.bam 12349103051 BAM transcriptome harmonized CPTAC3 74cccdd9-a929-4937-ac33-1cc3fe690bc1 fd4379f45365047a2b65b0170559aab6 {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor"} -C3N-01802.RNA-Seq.transcriptome.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.transcriptome.gdc_realn.bam 5514520660 BAM transcriptome harmonized CPTAC3 bf4f1c2d-6bc1-4747-a82b-a38276d86b17 35666ce61bbcded19df6ec73c6d2dcc3 {"aliquot_tag": "ALQ_74c5fb9e", "gdc_sample_type": "Primary Tumor"} -C3N-01802.WGS.N C3N-01802 UCEC WGS blood_normal CPT0080810002 CPT0080810002.WholeGenome.RP-1303.bam 76482218544 BAM aligned CPTAC3 c6bb3664-f51d-43c7-a67d-eddc5264168a 251c709abc2ccb8224a6b97b9673d6bb {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal"} -C3N-01802.WGS.N.hg38 C3N-01802 UCEC WGS blood_normal CPT0080810002 f5ae7b0e-9213-4424-a10e-7f1383d33b5b_gdc_realn.bam 113580834663 BAM harmonized CPTAC3 68ed2c5e-6ac7-4305-b273-d1c649e89954 2b30d4cd69dbca2cad4b4cf67e4086e5 {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal"} -C3N-01802.WGS.T C3N-01802 UCEC WGS tumor CPT0080030009 CPT0080030009.WholeGenome.RP-1303.bam 71175352210 BAM aligned CPTAC3 1e048b0a-ec53-4bee-a536-4b122545f4e6 06a1aedde382fa61fb2b4564f2a82a93 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor"} -C3N-01802.WGS.T.hg38 C3N-01802 UCEC WGS tumor CPT0080030009 ef72c57f-f998-4e9a-a563-b5969a93bcd8_gdc_realn.bam 108763450790 BAM harmonized CPTAC3 95d70287-457f-4f51-80b5-25d771f72a64 8ba51683e7e782c9b505fa9d4b484d09 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor"} -C3N-01802.WXS.N C3N-01802 UCEC WXS blood_normal CPT0080810002 CPT0080810002.WholeExome.RP-1303.bam 37393436253 BAM aligned CPTAC3 4f0aba5e-8b80-4c64-a93f-ac201bc23ebe ef46d30d78542a21bba3d89df00ed484 {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal"} -C3N-01802.WXS.N.hg38 C3N-01802 UCEC WXS blood_normal CPT0080810002 f5ae7b0e-9213-4424-a10e-7f1383d33b5b_gdc_realn.bam 50756030468 BAM harmonized CPTAC3 b16d3cc5-43af-4b25-ab64-b262492b6e42 1fc084fb44f548e2ee714a4be263fa42 {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal"} -C3N-01802.WXS.T C3N-01802 UCEC WXS tumor CPT0080030009 CPT0080030009.WholeExome.RP-1303.bam 28526205000 BAM aligned CPTAC3 8a4b482d-4bfb-4bc6-b38a-36632e59aed4 5c2d1e189aed70963524ce6da7dcd459 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor"} -C3N-01802.WXS.T.hg38 C3N-01802 UCEC WXS tumor CPT0080030009 ef72c57f-f998-4e9a-a563-b5969a93bcd8_gdc_realn.bam 39298212634 BAM harmonized CPTAC3 00527d6d-5b39-4a0e-a36a-30a88d5601ae 06baa61431f11dcdc14ce3f6f9d29f21 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor"} -C3N-01803.MethArray.Green.A C3N-01803 CCRCC Methylation_Array tissue_normal CPT0384910006 205555390157_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7f08b3e4-9da7-417e-ade0-aad7fd51bda5 91d5c5635380cc4d404a85daa270c5d4 {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.MethArray.Green.T C3N-01803 CCRCC Methylation_Array tumor CPT0384890006 205555390118_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4d7bfef0-c2c6-4a71-b273-3c833898aa60 eaf161f6449d15c6c796ba41bdaec3c6 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor"} -C3N-01803.MethArray.Red.A C3N-01803 CCRCC Methylation_Array tissue_normal CPT0384910006 205555390157_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 4d174bf3-307f-4f68-871e-9ce0a0876cbc 6f55bf3ccc22621012a88a2678ce9b12 {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.MethArray.Red.T C3N-01803 CCRCC Methylation_Array tumor CPT0384890006 205555390118_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 23202e53-1ecd-43bb-8c05-ccb40ce90911 03be5a06d148b61a207a38eae1f5be44 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor"} -C3N-01803.miRNA-Seq.A.hg38 C3N-01803 CCRCC miRNA-Seq tissue_normal CPT0384910009 59cca0be-f560-43d1-8013-7c824c2475f9_mirnaseq_gdc_realn.bam 367048271 BAM harmonized CPTAC3 9e175c74-d616-4075-89a6-5cc92d3ede9d 681d4ae89c9fa6bb8776de32c6880372 {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.miRNA-Seq.S34_L003_R1.T C3N-01803 CCRCC miRNA-Seq tumor CPT0384890009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TATAAT_S34_L003_R1_001.unaln.bam 365876507 BAM S34_L003_R1 unaligned CPTAC3 11c29af7-b7d8-412b-835d-81bdec996bf3 93ecf85f4fd6b5ba485efa5df3da51e4 {"aliquot_tag": "ALQ_9e7f0416", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01803.miRNA-Seq.S35_L003_R1.A C3N-01803 CCRCC miRNA-Seq tissue_normal CPT0384910009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCATTC_S35_L003_R1_001.unaln.bam 339894078 BAM S35_L003_R1 unaligned CPTAC3 7ead2cd1-e42b-4447-942f-41bbdf707dd3 656c0966e24d72d35982e232e603bf13 {"aliquot_tag": "ALQ_65539c72", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.miRNA-Seq.T.hg38 C3N-01803 CCRCC miRNA-Seq tumor CPT0384890009 ac9ae554-1486-4091-914c-d98ec83a15d9_mirnaseq_gdc_realn.bam 390185262 BAM harmonized CPTAC3 1c2d783b-3236-4c69-ba52-afacb99197e4 7397ff4a4c317120d216d407f1b15db0 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor"} -C3N-01803.RNA-Seq.chimeric.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.chimeric.gdc_realn.bam 268771014 BAM chimeric harmonized CPTAC3 5b362c82-c6cd-4d3c-8840-1ac40fb5827d 57d63680e1a1aa23e75ad9423df586ad {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.RNA-Seq.chimeric.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.chimeric.gdc_realn.bam 273336136 BAM chimeric harmonized CPTAC3 b85e032d-0f69-41b0-a24f-ad4ff604f0d6 d7d37f9fd4378fb10bfa002bdf650668 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor"} -C3N-01803.RNA-Seq.genomic.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.genomic.gdc_realn.bam 8275351212 BAM genomic harmonized CPTAC3 59584b00-51ec-4cbb-9832-6393d3d4db4d 06f264484417161883376789c984787d {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.RNA-Seq.genomic.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.genomic.gdc_realn.bam 7835159591 BAM genomic harmonized CPTAC3 cce1b114-56e4-4c9a-8e8c-22fff389e37c b10fdf19686c95a5d8d70a7055842276 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor"} -C3N-01803.RNA-Seq.S11_L004_R1.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R1_001.fastq.gz 3750693333 FASTQ S11_L004_R1 unaligned CPTAC3 4c23de64-a0a4-40bb-a86a-cef9ca55b541 233b458d3f8ddf0b62decfef1ae87938 {"aliquot_tag": "ALQ_65539c72", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.RNA-Seq.S11_L004_R2.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R2_001.fastq.gz 4263216443 FASTQ S11_L004_R2 unaligned CPTAC3 8c1ad916-bfbb-4548-b4dd-a398afe4adc7 4882869fa92cbfb1cb6be435747a0152 {"aliquot_tag": "ALQ_65539c72", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.RNA-Seq.S17_L005_R1.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R1_001.fastq.gz 3483233393 FASTQ S17_L005_R1 unaligned CPTAC3 8fc92fb9-a3cf-407c-a9c4-f46543c8a100 99addfd3055f4eac5b6d8e0e503a06d6 {"aliquot_tag": "ALQ_9e7f0416", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01803.RNA-Seq.S17_L005_R2.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R2_001.fastq.gz 3985080540 FASTQ S17_L005_R2 unaligned CPTAC3 ea130a72-04ef-4721-8183-f4e149fcd097 bb2acc754947b6a8579e7c93e9c3f23a {"aliquot_tag": "ALQ_9e7f0416", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01803.RNA-Seq.transcriptome.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.transcriptome.gdc_realn.bam 9104726181 BAM transcriptome harmonized CPTAC3 7997c364-751b-42e4-b786-b95541672ba9 41b46313f0bc701f8b0fb7e11fe188f5 {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.RNA-Seq.transcriptome.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.transcriptome.gdc_realn.bam 8332766520 BAM transcriptome harmonized CPTAC3 5f5741d7-e1c8-4aa7-9616-14bb882b9dc1 69cbf34358268fd6ac058fdc54a5dd87 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor"} -C3N-01803.WGS.N C3N-01803 CCRCC WGS blood_normal CPT0385470002 CPT0385470002.WholeGenome.RP-2158.bam 32913637065 BAM aligned CPTAC3 e23c5fc7-da3c-4d4b-9164-c7696d9ff97b 7b9c91e07d5c6189eb4bdd4e284c8715 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal"} -C3N-01803.WGS.N.hg38 C3N-01803 CCRCC WGS blood_normal CPT0385470002 f2a81e35-3ace-4506-aef2-b0d4cd490443_wgs_gdc_realn.bam 99069064720 BAM harmonized CPTAC3 772bf1ba-cb74-47ac-97d4-1200328d32fa ee6e4a1907374d368e5536bfea676c28 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal"} -C3N-01803.WGS.T C3N-01803 CCRCC WGS tumor CPT0384890006 CPT0384890006.WholeGenome.RP-2158.bam 21033309147 BAM aligned CPTAC3 64344e1f-cca5-4b28-ad4c-53e6e3cf31c1 c92a2bf72185f16395a19814a7f9ff3c {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor"} -C3N-01803.WGS.T.hg38 C3N-01803 CCRCC WGS tumor CPT0384890006 0498b57d-4f42-4a68-bb7a-35de7568ac78_wgs_gdc_realn.bam 62583483107 BAM harmonized CPTAC3 9bce70ed-679b-4d68-a335-8f31c6b1b384 82bcdcb1b01def92261344ae231384f3 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor"} -C3N-01803.WXS.A C3N-01803 CCRCC WXS tissue_normal CPT0384910006 CPT0384910006.WholeExome.RP-1303.bam 25734258909 BAM aligned CPTAC3 c242eebb-dc06-4d45-b4f6-20e3c8dd2602 f0b89e30249b60dfca5c856971125c53 {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.WXS.A.hg38 C3N-01803 CCRCC WXS tissue_normal CPT0384910006 09caaeaa-293f-45ae-a8b7-4933878a1ee8_wxs_gdc_realn.bam 35335371444 BAM harmonized CPTAC3 fc3f89c1-0f96-47e5-9462-b3d202f7dfe3 db485dce0c6c3489cb8e5823225aaa7f {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01803.WXS.N C3N-01803 CCRCC WXS blood_normal CPT0385470002 CPT0385470002.WholeExome.RP-1303.bam 24683985625 BAM aligned CPTAC3 32dcf226-fe9e-418c-b5b6-57758e8b8b1a 1292f1b3a66f6ad770225e657faec9d9 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal"} -C3N-01803.WXS.N.hg38 C3N-01803 CCRCC WXS blood_normal CPT0385470002 f2a81e35-3ace-4506-aef2-b0d4cd490443_wxs_gdc_realn.bam 33924070067 BAM harmonized CPTAC3 da4aeacd-1225-44a8-9747-65f45b4b1086 96fc7e2e9c18e673204ad1eab841b872 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal"} -C3N-01803.WXS.T C3N-01803 CCRCC WXS tumor CPT0384890006 CPT0384890006.WholeExome.RP-1303.bam 28211371643 BAM aligned CPTAC3 d8ea907a-ee21-4894-9fc1-f4178baae81a 59b32c18833f49ef803cc029c2278097 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor"} -C3N-01803.WXS.T.hg38 C3N-01803 CCRCC WXS tumor CPT0384890006 0498b57d-4f42-4a68-bb7a-35de7568ac78_wxs_gdc_realn.bam 38811519433 BAM harmonized CPTAC3 cdfb95b4-bfae-42c7-b59f-9521ea2d2266 40944a29fb5d2da1ef4cb8aceaa0f70b {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor"} -C3N-01806.MethArray.Green.A C3N-01806 CCRCC Methylation_Array tissue_normal CPT0115710006 204373100050_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 36c8e2eb-7de9-490e-b378-4299abbf2f07 503d18adaa2d6f0b69d51f05b590e07d {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.MethArray.Green.T C3N-01806 CCRCC Methylation_Array tumor CPT0115680009 203219650217_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 943fd7a9-2ebc-48d8-a106-096099187760 5c3aea21dcbe404e663d23da6ceda26a {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor"} -C3N-01806.MethArray.Red.A C3N-01806 CCRCC Methylation_Array tissue_normal CPT0115710006 204373100050_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 a0f2629d-b29c-44a7-a461-af4efa7af71f 52f9311353457cedefa59810613fce1a {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.MethArray.Red.T C3N-01806 CCRCC Methylation_Array tumor CPT0115680009 203219650217_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 29d9a9ae-a80d-4b44-8001-d9090ad0ed5d 665d0988140ebce8e23b5d3f6b0fce30 {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor"} -C3N-01806.miRNA-Seq.A.hg38 C3N-01806 CCRCC miRNA-Seq tissue_normal CPT0115710009 9bf294ff-9477-45bd-92cc-df0474c457b0_mirnaseq_gdc_realn.bam 220484910 BAM harmonized CPTAC3 5712a026-438c-4ff9-a8dd-1b61ca3bb25a d1c3855ffecbb6f2ba0c971fadb7062b {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.miRNA-Seq.S20_L002_R1.T C3N-01806 CCRCC miRNA-Seq tumor CPT0115680006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGGCC_S20_L002_R1_001.unaln.bam 178513399 BAM S20_L002_R1 unaligned CPTAC3 ebb0d1b3-a4a9-453b-b3cc-e4c243c5ddf5 e5bd0efbc51a3a0ef80b30318be790da {"aliquot_tag": "ALQ_9e64695e", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01806.miRNA-Seq.S47_L005_R1.A C3N-01806 CCRCC miRNA-Seq tissue_normal CPT0115710009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGAAG_S47_L005_R1_001.unaln.bam 202505857 BAM S47_L005_R1 unaligned CPTAC3 180fd0bf-9466-40cf-ba1f-89680728b66e 23d7cef1cca8c46facc46aa3bbcfc6a2 {"aliquot_tag": "ALQ_c897c51b", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.miRNA-Seq.T.hg38 C3N-01806 CCRCC miRNA-Seq tumor CPT0115680006 365e5da7-bcf2-4591-a24e-b0077dffe6f4_mirnaseq_gdc_realn.bam 195323195 BAM harmonized CPTAC3 23def0a0-8daa-47a5-9036-db9be6f627c5 b53ce9085818096b205de35c749d25e0 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor"} -C3N-01806.RNA-Seq.chimeric.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.chimeric.gdc_realn.bam 43250241 BAM chimeric harmonized CPTAC3 b8358765-fe3b-4aca-adca-cc5d45d69aea 35dc91dcc43f3300530de8437fc7fe13 {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.RNA-Seq.chimeric.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.chimeric.gdc_realn.bam 24580315 BAM chimeric harmonized CPTAC3 f3ca1cdf-a085-45cd-b416-8aaee4fb26ed c1df3588d763c9c26a4c743e6b3141a5 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor"} -C3N-01806.RNA-Seq.genomic.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.genomic.gdc_realn.bam 9532008518 BAM genomic harmonized CPTAC3 330f6c49-cfb1-4cda-b569-c6cf9cb7c867 2335cb49e4f964115f9abc78ea5e16c0 {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.RNA-Seq.genomic.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.genomic.gdc_realn.bam 8042235703 BAM genomic harmonized CPTAC3 51969af9-c9b7-4217-a2d4-321d2dbdfbf1 3569e422f202abf522d059bfccdfb5a2 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor"} -C3N-01806.RNA-Seq.S24_L006_R1.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3590677616 FASTQ S24_L006_R1 unaligned CPTAC3 acb2aa7e-d05f-4fbc-acab-292f9953f064 3ca573604af01627c81122168d18958f {"aliquot_tag": "ALQ_9e64695e", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01806.RNA-Seq.S24_L006_R2.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3950912340 FASTQ S24_L006_R2 unaligned CPTAC3 962cc125-5e3b-4b43-afa5-e5e2819cd3d1 b730b93ecb28f260b76317628649c818 {"aliquot_tag": "ALQ_9e64695e", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01806.RNA-Seq.S78_L008_R1.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R1_001.fastq.gz 4463683051 FASTQ S78_L008_R1 unaligned CPTAC3 bcf0ebc5-4f98-41fb-98d5-70483aac5e09 c560f6971c149edb6d07e118662f611c {"aliquot_tag": "ALQ_c897c51b", "sample": "S78", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.RNA-Seq.S78_L008_R2.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R2_001.fastq.gz 4609980250 FASTQ S78_L008_R2 unaligned CPTAC3 75b2022c-28f9-4b36-81c5-83347dd4ef92 94df5d250af776348f7974b9362ed6ba {"aliquot_tag": "ALQ_c897c51b", "sample": "S78", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.RNA-Seq.transcriptome.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.transcriptome.gdc_realn.bam 11455491666 BAM transcriptome harmonized CPTAC3 f23ad047-3394-415d-ad65-269ac9b08789 5d2df3bc67031673fc3617db75724d6d {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.RNA-Seq.transcriptome.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.transcriptome.gdc_realn.bam 10691453104 BAM transcriptome harmonized CPTAC3 29e0860a-3072-4fae-b6ce-0a59d783f105 412695dfbbb76ca77183f3f9a7e60245 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor"} -C3N-01806.WGS.A C3N-01806 CCRCC WGS tissue_normal CPT0115710006 CPT0115710006.WholeGenome.RP-1303.bam 53869491619 BAM aligned CPTAC3 9cf47423-62d8-4e36-b1cb-f7ea711c29f3 84ea2bb1cfd4d63c5daadf680c539ac6 {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.WGS.A.hg38 C3N-01806 CCRCC WGS tissue_normal CPT0115710006 64942c93-f992-4040-b6a2-f04ff39ccf4c_wgs_gdc_realn.bam 77191559557 BAM harmonized CPTAC3 87f5eb05-629c-48a3-869c-c526181f6146 31cc17a164c7421ceebceb2e16e04d1d {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.WGS.N C3N-01806 CCRCC WGS blood_normal CPT0116370002 CPT0116370002.WholeGenome.RP-1303.bam 67036880881 BAM aligned CPTAC3 1042e165-2bfa-43a6-bedc-7dc60c61e8d0 76ff4c74f36c7acf10b4460bb5bab5b4 {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01806.WGS.N.hg38 C3N-01806 CCRCC WGS blood_normal CPT0116370002 a62abc08-80e2-4fdc-bb57-02d81eee7e3b_wgs_gdc_realn.bam 97847247224 BAM harmonized CPTAC3 53c7840f-0805-4b2b-9066-72ad719a8daa c0b2adb4fa508254a3ba871192b1ac2d {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01806.WGS.T C3N-01806 CCRCC WGS tumor CPT0115680009 CPT0115680009.WholeGenome.RP-1303.bam 55773146760 BAM aligned CPTAC3 76d30c4e-9d2b-4d09-99ca-6a6fa1f2a378 ae5e76e35286e884f6a79559771ff27d {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor"} -C3N-01806.WGS.T.hg38 C3N-01806 CCRCC WGS tumor CPT0115680009 ff1a4870-ae40-4eda-a2c0-a0ad1de0dc3a_wgs_gdc_realn.bam 82319625603 BAM harmonized CPTAC3 d3680d05-9616-4efa-b98d-605b89ea9655 f1757671020aaf91c213922d4ebd512d {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor"} -C3N-01806.WXS.A C3N-01806 CCRCC WXS tissue_normal CPT0115710006 CPT0115710006.WholeExome.RP-1303.bam 23252039484 BAM aligned CPTAC3 627f9386-8f44-48d5-bde2-e5e0c954714c 1ba75ec02c2d004df3f0e61e2c9d4f1c {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.WXS.A.hg38 C3N-01806 CCRCC WXS tissue_normal CPT0115710006 64942c93-f992-4040-b6a2-f04ff39ccf4c_wxs_gdc_realn.bam 32148698914 BAM harmonized CPTAC3 a35ce486-5fa3-4080-9469-dbc7ab9b1ba1 265bdb0fbdb33dc032030928bc07b2bb {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01806.WXS.N C3N-01806 CCRCC WXS blood_normal CPT0116370002 CPT0116370002.WholeExome.RP-1303.bam 23643655307 BAM aligned CPTAC3 9be4093f-9063-4bdf-82b4-fe3e4a7500ad 6576f61c7e91b1e60c901201197dc73d {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01806.WXS.N.hg38 C3N-01806 CCRCC WXS blood_normal CPT0116370002 a62abc08-80e2-4fdc-bb57-02d81eee7e3b_wxs_gdc_realn.bam 32338387417 BAM harmonized CPTAC3 87223073-5f47-490c-9751-61d41316c209 f0a53b619aeed951eefed55f1a13b593 {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01806.WXS.T C3N-01806 CCRCC WXS tumor CPT0115680009 CPT0115680009.WholeExome.RP-1303.bam 30338616925 BAM aligned CPTAC3 2707b3ff-09c1-4ed8-86f5-8a45686cedca 12d5c1bd53a8ccf6668fb1333f3743cf {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor"} -C3N-01806.WXS.T.hg38 C3N-01806 CCRCC WXS tumor CPT0115680009 ff1a4870-ae40-4eda-a2c0-a0ad1de0dc3a_wxs_gdc_realn.bam 41829478294 BAM harmonized CPTAC3 86eb98f9-9a37-4b1c-bddc-94ce570cff4b 9d0717cd9d6497d05fb79e16064c81ca {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor"} -C3N-01808.MethArray.Green.A C3N-01808 CCRCC Methylation_Array tissue_normal CPT0089480013 204930640011_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 77daa96d-acd2-4800-b4a8-5f1cb101e539 cc7ca04b0d59d5f3bb48125e4fed34de {"aliquot_tag": "ALQ_75496887", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.MethArray.Green.T C3N-01808 CCRCC Methylation_Array tumor CPT0089460009 202234360009_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 520e8b01-edfb-42b8-bb9e-95c376a0c0d4 b52f8250a5bd97cc86e07deab8db1270 {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor"} -C3N-01808.MethArray.Red.A C3N-01808 CCRCC Methylation_Array tissue_normal CPT0089480013 204930640011_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 951e93d1-f2c6-4cf8-9542-ed7daa3a67d4 9c4d6c12599dc04d831ce30afd5315ff {"aliquot_tag": "ALQ_75496887", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.MethArray.Red.T C3N-01808 CCRCC Methylation_Array tumor CPT0089460009 202234360009_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 823a8ab9-8a65-4695-8c9b-e522647b5cc9 510ec41f8582fdbaf4b52b7bb91ca2dc {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor"} -C3N-01808.miRNA-Seq.A.hg38 C3N-01808 CCRCC miRNA-Seq tissue_normal CPT0089480006 3a83e35a-2718-44e4-9140-de766ff1c957_mirnaseq_gdc_realn.bam 207153941 BAM harmonized CPTAC3 70f68fc3-2e05-49b0-bbb3-4ec5f1dbbcb5 726b4df39ad1710ec1251c4ec08a274b {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.miRNA-Seq.S11_L005_R1.A C3N-01808 CCRCC miRNA-Seq tissue_normal CPT0089480006 181108_UNC31-K00269_0163_BH23TVBBXY_GGCTAC_S11_L005_R1_001.unaln.bam 185627369 BAM S11_L005_R1 unaligned CPTAC3 c3ada68e-e0d1-499d-8e8a-dd671579bae4 db8a0d73039e29fca93b0fb82e4b22e9 {"aliquot_tag": "ALQ_1c38ad49", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.miRNA-Seq.S25_L003_R1.T C3N-01808 CCRCC miRNA-Seq tumor CPT0089460006 181119_UNC31-K00269_0165_AH27WCBBXY_ATCACG_S25_L003_R1_001.unaln.bam 181859052 BAM S25_L003_R1 unaligned CPTAC3 58985bb3-09b3-4247-a5a8-ef907bdc536b 265f582defc6a29ac32f1e668d283e12 {"aliquot_tag": "ALQ_a3081328", "sample": "S25", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01808.miRNA-Seq.T.hg38 C3N-01808 CCRCC miRNA-Seq tumor CPT0089460006 4c1f4c4d-f91e-43b7-b65d-cf0fff761ea1_mirnaseq_gdc_realn.bam 207383311 BAM harmonized CPTAC3 790f05da-eacc-4d03-bab8-1428e3e4a569 78e97695faf5f1137d797e6ac6f359b6 {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor"} -C3N-01808.RNA-Seq.chimeric.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.chimeric.gdc_realn.bam 93571200 BAM chimeric harmonized CPTAC3 7cc69a53-0c42-4439-94e9-487dac416485 dd50e9f38e653a552108d2143062df2f {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.RNA-Seq.chimeric.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.chimeric.gdc_realn.bam 34431085 BAM chimeric harmonized CPTAC3 66e9f885-005e-4ff8-867b-2de82852f8fb 4d449a0222e4e3163ebf35b15ffab0bc {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor"} -C3N-01808.RNA-Seq.genomic.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.genomic.gdc_realn.bam 9508422205 BAM genomic harmonized CPTAC3 116657b5-4199-447c-ab9f-6a4a463f49ed c4d58556d604c545ee0d6a64f348fd1b {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.RNA-Seq.genomic.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.genomic.gdc_realn.bam 7425489211 BAM genomic harmonized CPTAC3 e24b40ac-3566-43d3-8348-f3f4bcd5b135 3a6811e88054e4e6ad9b9c22c8bdae3e {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor"} -C3N-01808.RNA-Seq.S11_L003_R1.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R1_001.fastq.gz 4528881184 FASTQ S11_L003_R1 unaligned CPTAC3 fdf08798-675e-478a-a72b-7b925d01a950 b158c9f6eb40258a0366711dee2e38fb {"aliquot_tag": "ALQ_1c38ad49", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.RNA-Seq.S11_L003_R2.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R2_001.fastq.gz 4993203081 FASTQ S11_L003_R2 unaligned CPTAC3 b33516d1-94be-41ed-9b6d-ed28b701b8c8 36af7c4f1348ad80a74183730d41e686 {"aliquot_tag": "ALQ_1c38ad49", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.RNA-Seq.S48_L004_R1.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R1_001.fastq.gz 3429150091 FASTQ S48_L004_R1 unaligned CPTAC3 a71bea30-6a66-4c8f-b526-464c906f5b1a 0e876bccad6724217183d159d8ae7cf7 {"aliquot_tag": "ALQ_a3081328", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01808.RNA-Seq.S48_L004_R2.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R2_001.fastq.gz 3748221155 FASTQ S48_L004_R2 unaligned CPTAC3 bbe46ce6-99dc-400d-9e4b-f4ec1fd4a1e8 1837e8fc15d27c9ad046835914317f2e {"aliquot_tag": "ALQ_a3081328", "sample": "S48", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01808.RNA-Seq.transcriptome.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.transcriptome.gdc_realn.bam 11783830498 BAM transcriptome harmonized CPTAC3 662ea23e-0f6c-4e34-ae65-eafd3ca4990b a220a3c44ab45dc068d66ac2a830ff03 {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.RNA-Seq.transcriptome.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.transcriptome.gdc_realn.bam 9368332116 BAM transcriptome harmonized CPTAC3 ef3b6048-587e-4534-98e3-3488a26bbf52 5858575c4ec5bd3dbd0d560aa322bde8 {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor"} -C3N-01808.WGS.A C3N-01808 CCRCC WGS tissue_normal CPT0089480009 CPT0089480009.WholeGenome.RP-1303.bam 51211838272 BAM aligned CPTAC3 4c2ffaed-95d3-4351-9812-0b51c23ea140 f1ff5d82942d6a8d967339a664495f0b {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.WGS.A.hg38 C3N-01808 CCRCC WGS tissue_normal CPT0089480009 0a4d912d-dfa2-40cf-bfbe-e78f6ee4057e_wgs_gdc_realn.bam 74569479437 BAM harmonized CPTAC3 5234b5a1-f316-4bc3-9740-538fb69714b3 e732acb7cc82d5fc045497355dac7024 {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.WGS.N C3N-01808 CCRCC WGS blood_normal CPT0091340002 CPT0091340002.WholeGenome.RP-1303.bam 58043850495 BAM aligned CPTAC3 7da57449-efe2-4d59-8a98-3f4276871237 ffb59b72ceaa04088ab8ff14d5b48a80 {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal"} -C3N-01808.WGS.N.hg38 C3N-01808 CCRCC WGS blood_normal CPT0091340002 b8024433-4467-4772-861e-9dc4b6d0d3a1_wgs_gdc_realn.bam 85433577110 BAM harmonized CPTAC3 0e7e9bd9-e159-4324-9a7c-5911678d4026 50387b6cb96f22a4742d2da7cab9f1bc {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal"} -C3N-01808.WGS.T C3N-01808 CCRCC WGS tumor CPT0089460009 CPT0089460009.WholeGenome.RP-1303.bam 72465823117 BAM aligned CPTAC3 16267105-b07a-4b4a-8c1d-3bd122729178 1cb728b44241b747c226880e9b8b1140 {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor"} -C3N-01808.WGS.T.hg38 C3N-01808 CCRCC WGS tumor CPT0089460009 875e2aa1-2d48-43e0-ab93-f937b70b80da_wgs_gdc_realn.bam 105734837760 BAM harmonized CPTAC3 20b73af5-f1f1-4abf-9efc-8e2adafa7500 a6ef127afb8a7ca9132fa9d0887456ff {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor"} -C3N-01808.WXS.A C3N-01808 CCRCC WXS tissue_normal CPT0089480009 CPT0089480009.WholeExome.RP-1303.bam 32916978370 BAM aligned CPTAC3 27e15c69-77d4-40ce-8173-ec77702c180c aa247c760260a03ef6c01f35e2325ff1 {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.WXS.A.hg38 C3N-01808 CCRCC WXS tissue_normal CPT0089480009 0a4d912d-dfa2-40cf-bfbe-e78f6ee4057e_wxs_gdc_realn.bam 44495852601 BAM harmonized CPTAC3 c487d3b7-f840-4725-afa5-50905ee92f15 6ae514ba271098ea7e1f4d255f520874 {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01808.WXS.N C3N-01808 CCRCC WXS blood_normal CPT0091340002 CPT0091340002.WholeExome.RP-1303.bam 40931090743 BAM aligned CPTAC3 2835a47e-cb66-4459-bf94-048cc8301ca6 036c35ad7a83c0dd214e1ddf6d255420 {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal"} -C3N-01808.WXS.N.hg38 C3N-01808 CCRCC WXS blood_normal CPT0091340002 b8024433-4467-4772-861e-9dc4b6d0d3a1_wxs_gdc_realn.bam 55462225368 BAM harmonized CPTAC3 00125612-8710-47a3-9562-9d0e9cfbd639 f08c8a6d33f637231ae04b481e278c21 {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal"} -C3N-01808.WXS.T C3N-01808 CCRCC WXS tumor CPT0089460009 CPT0089460009.WholeExome.RP-1303.bam 30949762191 BAM aligned CPTAC3 e896140c-6495-4150-89d7-51e0e4905821 a7212d6b758fff5f3aa37d2991191b60 {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor"} -C3N-01808.WXS.T.hg38 C3N-01808 CCRCC WXS tumor CPT0089460009 875e2aa1-2d48-43e0-ab93-f937b70b80da_wxs_gdc_realn.bam 42293987438 BAM harmonized CPTAC3 13087886-a551-4b88-b1be-ccefdd9151f9 5b85c65898ba2920112f06d63566a55b {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor"} -C3N-01814.MethArray.Green.T C3N-01814 GBM Methylation_Array tumor CPT0167860007 203027390049_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 df78afa0-d612-47d7-a2a7-f8bb314c5ce2 b12d8ab035e9376773aac3e93f3787e7 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor"} -C3N-01814.MethArray.Red.T C3N-01814 GBM Methylation_Array tumor CPT0167860007 203027390049_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b8633329-0d09-4a12-99e0-a3520295059b 82794d1fb63562929a6fc018883fcae2 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor"} -C3N-01814.miRNA-Seq.S12_L001_R1.T C3N-01814 GBM miRNA-Seq tumor CPT0167860010 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L001_R1_001.unaln.bam 202356121 BAM S12_L001_R1 unaligned CPTAC3 a3a72840-c189-494e-a37d-ce09628f1499 ceba7da0290afa332b9d5f37442716fe {"aliquot_tag": "ALQ_767c3a0b", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01814.miRNA-Seq.T.hg38 C3N-01814 GBM miRNA-Seq tumor CPT0167860010 acccee8e-c693-4054-a8cf-2d1d7044d36d_mirnaseq_gdc_realn.bam 223809970 BAM harmonized CPTAC3 1149da74-6730-4e2c-8e37-183e4f5ecf34 0df23abd09917e72dffc65244f55d540 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor"} -C3N-01814.RNA-Seq.chimeric.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.chimeric.gdc_realn.bam 35034193 BAM chimeric harmonized CPTAC3 5b155227-739c-48e7-baa8-d37b1ededead ffaf63bdb1cfbb9fb00edf0fc62017e5 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor"} -C3N-01814.RNA-Seq.genomic.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.genomic.gdc_realn.bam 6783070433 BAM genomic harmonized CPTAC3 e4d8bd43-301a-43e7-bdcf-e596a5cdd77a 1132bff343769a6d1c3d68733dca2776 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor"} -C3N-01814.RNA-Seq.S12_L003_R1.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3257766189 FASTQ S12_L003_R1 unaligned CPTAC3 6e1afdd8-fa3d-4cd2-a8f9-1b1206045082 378bdc0f33fd7bba82c5857939f8ad51 {"aliquot_tag": "ALQ_767c3a0b", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01814.RNA-Seq.S12_L003_R2.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 3528721336 FASTQ S12_L003_R2 unaligned CPTAC3 bf1337a9-d5ba-4ed0-a2d3-851e9dd52394 47a1fffa4f8a5fd01d7bc50cc619c458 {"aliquot_tag": "ALQ_767c3a0b", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01814.RNA-Seq.transcriptome.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.transcriptome.gdc_realn.bam 8974684972 BAM transcriptome harmonized CPTAC3 d5e89aea-2168-4690-8f83-cab477e46527 8389136677e3a76885d031f844e39643 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor"} -C3N-01814.scRNA-Seq.S6_L003_R1.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R1_001.fastq.gz 14858049776 FASTQ S6_L003_R1 unaligned CPTAC3 763a1b3e-68a5-4e4e-819a-aba30874cafc 1660259f8d5517f534bfc08e4167922e {"aliquot_tag": "ALQ_616ce84", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01814.scRNA-Seq.S6_L003_R2.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R2_001.fastq.gz 36982151357 FASTQ S6_L003_R2 unaligned CPTAC3 ae555dfa-4a64-4170-a34f-3c6bf957775f 1be8e5e5a873a307ff11e6375561672e {"aliquot_tag": "ALQ_616ce84", "sample": "S6", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01814.scRNA-Seq.T.hg38 C3N-01814 GBM scRNA-Seq tumor CPT0167860015 possorted_genome_bam.bam 44015806134 BAM harmonized CPTAC3 9a142ba2-e139-404b-9ed2-94ee0d7ea463 f3b13bc4e81a4e5a7a799b6c5b703835 {"aliquot_tag": "ALQ_616ce84", "gdc_sample_type": "Primary Tumor"} -C3N-01814.WGS.N C3N-01814 GBM WGS blood_normal CPT0167920004 CPT0167920004.WholeGenome.RP-1303.bam 53609130596 BAM aligned CPTAC3 6f71568a-9f40-4fc8-9e40-4792ea5434e4 5b641d011aed816daf49372d778c22a2 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal"} -C3N-01814.WGS.N.hg38 C3N-01814 GBM WGS blood_normal CPT0167920004 05e1c388-5dbe-44bd-8309-474ce6854f2a_wgs_gdc_realn.bam 76750989332 BAM harmonized CPTAC3 e7f7509e-0375-4e1c-a22c-b5ba92fa02cd a990577030ee889b373300ec62249a48 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal"} -C3N-01814.WGS.T C3N-01814 GBM WGS tumor CPT0167860007 CPT0167860007.WholeGenome.RP-1303.bam 58970002690 BAM aligned CPTAC3 419840c0-0d43-4a90-820d-b7fc05c71d1d dd7cca2dbb4515010651bd1abfc146d3 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor"} -C3N-01814.WGS.T.hg38 C3N-01814 GBM WGS tumor CPT0167860007 89c71c22-206b-4f62-b69e-093b180053e2_wgs_gdc_realn.bam 87522260665 BAM harmonized CPTAC3 50aea80d-b1ca-4f31-b402-4df5b9474d46 d87639ce83b4e548f26a203b4bc8c5dc {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor"} -C3N-01814.WXS.N C3N-01814 GBM WXS blood_normal CPT0167920004 CPT0167920004.WholeExome.RP-1303.bam 28538450595 BAM aligned CPTAC3 be118832-2b34-4991-bd03-a1a24f2cd429 f0e6725323638116be25754192b48148 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal"} -C3N-01814.WXS.N.hg38 C3N-01814 GBM WXS blood_normal CPT0167920004 05e1c388-5dbe-44bd-8309-474ce6854f2a_wxs_gdc_realn.bam 38311524374 BAM harmonized CPTAC3 41119aa3-8821-449a-8d0e-c8d7a80276d8 5b24045d9316af208362e87fc0c02772 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal"} -C3N-01814.WXS.T C3N-01814 GBM WXS tumor CPT0167860007 CPT0167860007.WholeExome.RP-1303.bam 26372291681 BAM aligned CPTAC3 e2f9f2af-b739-4b51-8f47-8ccb0469ebf3 cbf3dc2a7ad639c263b1b735ed06b4a3 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor"} -C3N-01814.WXS.T.hg38 C3N-01814 GBM WXS tumor CPT0167860007 89c71c22-206b-4f62-b69e-093b180053e2_wxs_gdc_realn.bam 35667880000 BAM harmonized CPTAC3 e0007fe8-51f4-4f7c-a65a-fbd85b670916 c4f33a5f99df49839271a0969fa1e975 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor"} -C3N-01815.MethArray.Green.T C3N-01815 GBM Methylation_Array tumor CPT0167970006 203027390120_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d4efa719-14e2-47af-b00c-f6ffa4e946f4 49c11854f5899c905b61c0f30826b501 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor"} -C3N-01815.MethArray.Red.T C3N-01815 GBM Methylation_Array tumor CPT0167970006 203027390120_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 81a2a3a8-531c-49a6-86df-ef5cd3436adc e9203dc4c0dfe9778c107feb5a1d68cf {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor"} -C3N-01815.miRNA-Seq.S13_L001_R1.T C3N-01815 GBM miRNA-Seq tumor CPT0167970009 181119_UNC31-K00269_0165_AH27WCBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 290368226 BAM S13_L001_R1 unaligned CPTAC3 0cbed0e7-f4a5-4fed-b366-ab98cc25fd85 9e2b16e46848b9fddb4190903511c415 {"aliquot_tag": "ALQ_e08749fb", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01815.miRNA-Seq.T.hg38 C3N-01815 GBM miRNA-Seq tumor CPT0167970009 d3c083c4-a134-4fa7-9f8d-3d5219c3e837_mirnaseq_gdc_realn.bam 319369751 BAM harmonized CPTAC3 a6697001-3536-43e1-9960-8d1a25d81459 7d8ae2fb0ec3f3a13366d28960ce2bb0 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor"} -C3N-01815.RNA-Seq.chimeric.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.chimeric.gdc_realn.bam 31112716 BAM chimeric harmonized CPTAC3 a7808f2a-a56c-4cd9-a9b0-c59ce0841549 b3d17ba9c37a0cf7d9e9acb7f282aa97 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor"} -C3N-01815.RNA-Seq.genomic.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.genomic.gdc_realn.bam 9660512804 BAM genomic harmonized CPTAC3 74529f5d-f7e6-436f-b70e-ae79299a619c d6842f1c8fb277b8e115c25446283aa3 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor"} -C3N-01815.RNA-Seq.S5_L002_R1.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 4365117694 FASTQ S5_L002_R1 unaligned CPTAC3 44da4b86-b09e-49fc-a36a-e2651a289532 1e300e73fa80c169718ca131840631c0 {"aliquot_tag": "ALQ_e08749fb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01815.RNA-Seq.S5_L002_R2.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4718126134 FASTQ S5_L002_R2 unaligned CPTAC3 4e0cc165-8e13-4d78-949d-51cd14172790 5efcd418ae3463e36da2160c58462b90 {"aliquot_tag": "ALQ_e08749fb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01815.RNA-Seq.transcriptome.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.transcriptome.gdc_realn.bam 12245008309 BAM transcriptome harmonized CPTAC3 89cf69bb-c697-410f-9533-2f5d10c77e04 1efd5232c1864820f952c509a4dd60b1 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor"} -C3N-01815.scRNA-Seq.S1_L003_R1.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R1_001.fastq.gz 11428500305 FASTQ S1_L003_R1 unaligned CPTAC3 b74fa3fd-3586-4a83-8fde-e4501100df58 1abfbe08aa8a7dfe2991a264f8a37bb3 {"aliquot_tag": "ALQ_872d0407", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01815.scRNA-Seq.S1_L003_R2.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R2_001.fastq.gz 27122742441 FASTQ S1_L003_R2 unaligned CPTAC3 19bf5a8b-a0e8-4b5e-8d97-8f221f992be2 a1a1da8461c5793b0e39873bb669ba3b {"aliquot_tag": "ALQ_872d0407", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01815.scRNA-Seq.T.hg38 C3N-01815 GBM scRNA-Seq tumor CPT0167970014 possorted_genome_bam.bam 31798102492 BAM harmonized CPTAC3 97a21536-05ef-4299-a499-6ebe3b549d7e be0cb592ec948f3f2af87a839258f967 {"aliquot_tag": "ALQ_872d0407", "gdc_sample_type": "Primary Tumor"} -C3N-01815.WGS.N C3N-01815 GBM WGS blood_normal CPT0168030004 CPT0168030004.WholeGenome.RP-1303.bam 58495170426 BAM aligned CPTAC3 ef61a326-08b5-435b-b40f-6d5b25c5fd95 05699362dfd59f8dd50171b5c89bb379 {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01815.WGS.N.hg38 C3N-01815 GBM WGS blood_normal CPT0168030004 f3005199-2091-4c0e-9eb7-003fc235563b_wgs_gdc_realn.bam 85488812992 BAM harmonized CPTAC3 3871bd67-8f7f-4779-836f-244104dcfd7d 002b0d8eb80aa96fba51a95c9020602b {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01815.WGS.T C3N-01815 GBM WGS tumor CPT0167970006 CPT0167970006.WholeGenome.RP-1303.bam 55488853216 BAM aligned CPTAC3 1674650c-f516-4593-bb34-f6c363e3ee5c bc78611fe2b456eb6998078d38688584 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor"} -C3N-01815.WGS.T.hg38 C3N-01815 GBM WGS tumor CPT0167970006 25a378f9-10f1-4864-b062-ef5d66d0c06b_wgs_gdc_realn.bam 82315464227 BAM harmonized CPTAC3 d597492d-0529-40e6-8ab6-b1899eca94c0 cfdb1dd4cf5273d643e15dab8c59628d {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor"} -C3N-01815.WXS.N C3N-01815 GBM WXS blood_normal CPT0168030004 CPT0168030004.WholeExome.RP-1303.bam 37714522298 BAM aligned CPTAC3 851ff1e7-7d35-42e3-a003-943009dae111 83d77fbaed544b38e4df8029af699e27 {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01815.WXS.N.hg38 C3N-01815 GBM WXS blood_normal CPT0168030004 f3005199-2091-4c0e-9eb7-003fc235563b_wxs_gdc_realn.bam 51028722153 BAM harmonized CPTAC3 1ac9f6d8-2696-4806-9ea8-d29406975657 1f59087c609da6d00785853dda4f9f68 {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01815.WXS.T C3N-01815 GBM WXS tumor CPT0167970006 CPT0167970006.WholeExome.RP-1303.bam 29110103979 BAM aligned CPTAC3 1bcbab3b-580a-4faa-b109-c8da4c317c91 b77c33cd1ab1ce3c53e7c650ff591be5 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor"} -C3N-01815.WXS.T.hg38 C3N-01815 GBM WXS tumor CPT0167970006 25a378f9-10f1-4864-b062-ef5d66d0c06b_wxs_gdc_realn.bam 38910025670 BAM harmonized CPTAC3 33c9cd29-c40e-4d55-bb57-6c365a2ca5c9 54ff2d1352efe62f24fd689c2fb0e2d2 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor"} -C3N-01816.MethArray.Green.T C3N-01816 GBM Methylation_Array tumor CPT0168080006 203027390091_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b32585b6-782f-4d9e-95af-380225c17b0f 15f845e0de8b4541bf1210297205a1d0 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor"} -C3N-01816.MethArray.Red.T C3N-01816 GBM Methylation_Array tumor CPT0168080006 203027390091_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8f5f006b-b281-4619-b1ec-8b08e1402c45 02b7993cab3f6fe7190d8d8244e04834 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor"} -C3N-01816.miRNA-Seq.S14_L001_R1.T C3N-01816 GBM miRNA-Seq tumor CPT0168080009 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 197541354 BAM S14_L001_R1 unaligned CPTAC3 e3677e53-b4f1-4048-bdbc-a3e41dcbcde4 1c940f78b7f149bbfedf70fd9ecc1397 {"aliquot_tag": "ALQ_b390ff0b", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01816.miRNA-Seq.T.hg38 C3N-01816 GBM miRNA-Seq tumor CPT0168080009 394cad9e-041f-412a-92d1-e0141e3ebca3_mirnaseq_gdc_realn.bam 215575648 BAM harmonized CPTAC3 105ccb4b-9176-4ed9-bbf6-018ad0b2f759 8fc3dc8b2a8de6c46a5ace8a96b77ae5 {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor"} -C3N-01816.RNA-Seq.chimeric.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.chimeric.gdc_realn.bam 29175824 BAM chimeric harmonized CPTAC3 2d3fd6a8-a502-4702-a5ac-cdc571a266ff 95340004fc903e99606295ede22e8544 {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor"} -C3N-01816.RNA-Seq.genomic.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.genomic.gdc_realn.bam 9014057387 BAM genomic harmonized CPTAC3 c578577f-6f18-48a7-b092-00d76bedaa50 816a5e12fb2ff18a2ef08bb2bae86acd {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor"} -C3N-01816.RNA-Seq.S6_L002_R1.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4266443871 FASTQ S6_L002_R1 unaligned CPTAC3 d4c2e7c6-bb6b-485e-8d1e-08fe07af549c 63014661469f791d6d34f8d928c76dcc {"aliquot_tag": "ALQ_b390ff0b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01816.RNA-Seq.S6_L002_R2.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4629196221 FASTQ S6_L002_R2 unaligned CPTAC3 c37234b3-f608-4174-a9fd-a03511073262 11f74064b03ae68a012ee822f02eae39 {"aliquot_tag": "ALQ_b390ff0b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01816.RNA-Seq.transcriptome.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.transcriptome.gdc_realn.bam 12961390945 BAM transcriptome harmonized CPTAC3 54f71eca-5f00-4290-8cc2-0ce2df637b7b 4a9a7c415d7fba7bbfc6223fe8ad1e4c {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor"} -C3N-01816.scRNA-Seq.S1_L003_R1.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R1_001.fastq.gz 9910411370 FASTQ S1_L003_R1 unaligned CPTAC3 29127cc1-d844-4345-9bf5-d1844e1c2c70 afd2e3f2bd7f203ae697f374657c61ad {"aliquot_tag": "ALQ_d43ab2f7", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01816.scRNA-Seq.S1_L003_R2.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R2_001.fastq.gz 24642737722 FASTQ S1_L003_R2 unaligned CPTAC3 a4e613cb-85fc-4ecc-8f13-af9809e13f88 6434cd1f75bb00d9adc103d303e770b8 {"aliquot_tag": "ALQ_d43ab2f7", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01816.scRNA-Seq.T.hg38 C3N-01816 GBM scRNA-Seq tumor CPT0168080014 possorted_genome_bam.bam 30045096155 BAM harmonized CPTAC3 779821e7-a1f6-4d1f-8ced-b9e338552da3 ef3503a94ea6bc5d6d51235dec8e9b05 {"aliquot_tag": "ALQ_d43ab2f7", "gdc_sample_type": "Primary Tumor"} -C3N-01816.WGS.N C3N-01816 GBM WGS blood_normal CPT0168120002 CPT0168120002.WholeGenome.RP-1303.bam 62511736580 BAM aligned CPTAC3 0301404e-c1d2-44f0-a649-ae43d93119e1 1295d8161fb2e1d42a380d0278fb30d7 {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal"} -C3N-01816.WGS.N.hg38 C3N-01816 GBM WGS blood_normal CPT0168120002 0582feca-5f76-4ca8-99a1-2183174f62a9_wgs_gdc_realn.bam 91027023070 BAM harmonized CPTAC3 96df1f35-0652-480a-90cf-9b4e184b5fa3 ca391ba69c0b6ef9b2169aacb744b1cb {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal"} -C3N-01816.WGS.T C3N-01816 GBM WGS tumor CPT0168080006 CPT0168080006.WholeGenome.RP-1303.bam 56381322083 BAM aligned CPTAC3 c33aa02f-33e0-45db-97a8-85b741b55b51 98494c91c4d5ca839546005311c2ffb4 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor"} -C3N-01816.WGS.T.hg38 C3N-01816 GBM WGS tumor CPT0168080006 1ecfbcc3-a1a0-43e6-aa4f-97bd311b794a_wgs_gdc_realn.bam 81855660238 BAM harmonized CPTAC3 69488b60-9ff2-4702-bc91-b13dea8a99c4 e0ee6c32fddbece99ba50588a9cdfd0e {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor"} -C3N-01816.WXS.N C3N-01816 GBM WXS blood_normal CPT0168120002 CPT0168120002.WholeExome.RP-1303.bam 27771808577 BAM aligned CPTAC3 90aa4b6b-d831-44b7-9718-ccd6db62b930 d917d2ae25daeaa13f93cf1acaaa6a54 {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal"} -C3N-01816.WXS.N.hg38 C3N-01816 GBM WXS blood_normal CPT0168120002 0582feca-5f76-4ca8-99a1-2183174f62a9_wxs_gdc_realn.bam 38245434442 BAM harmonized CPTAC3 8e45b01f-e38d-4f18-8795-d8b6a96135d9 a8004bfd8aadd740ac5d257e6e36f8ec {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal"} -C3N-01816.WXS.T C3N-01816 GBM WXS tumor CPT0168080006 CPT0168080006.WholeExome.RP-1303.bam 21121946020 BAM aligned CPTAC3 db517266-de6d-4709-924d-0fe55c20fdcc 143bfc03839f0298dc84ff81be61284a {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor"} -C3N-01816.WXS.T.hg38 C3N-01816 GBM WXS tumor CPT0168080006 1ecfbcc3-a1a0-43e6-aa4f-97bd311b794a_wxs_gdc_realn.bam 28721040012 BAM harmonized CPTAC3 198d89fa-8356-4272-a437-9e84a05200ad eb8a4c7cefb19085d2f1943b532ef6d2 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor"} -C3N-01817.MethArray.Green.T C3N-01817 GBM Methylation_Array tumor CPT0168170005 203028200104_R08C01_Grn.idat 13676235 IDAT Green NA CPTAC3 190a047a-a47d-4b61-b44c-4162a053f59e e7f2ce948c6f51c0f14dcd6a96e3cc59 {"aliquot_tag": "ALQ_f32af754", "gdc_sample_type": "Primary Tumor"} -C3N-01817.MethArray.Red.T C3N-01817 GBM Methylation_Array tumor CPT0168170005 203028200104_R08C01_Red.idat 13676235 IDAT Red NA CPTAC3 e2b94334-70f0-4c42-bdb1-bce7f378d4ec fb80069c356c492ead16971c8d8d1da1 {"aliquot_tag": "ALQ_f32af754", "gdc_sample_type": "Primary Tumor"} -C3N-01818.MethArray.Green.T C3N-01818 GBM Methylation_Array tumor CPT0168270006 203027380028_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 a452c7cf-ae53-45df-a69c-e309e13ffcbc 14b3ea3537333a9e8a5ead6b95b4dcc6 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor"} -C3N-01818.MethArray.Red.T C3N-01818 GBM Methylation_Array tumor CPT0168270006 203027380028_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 fc76c7f3-367c-4090-8a75-cf97e6ebe91a c81e24795ee34e576de1abae7aac0ea5 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor"} -C3N-01818.miRNA-Seq.S16_L001_R1.T C3N-01818 GBM miRNA-Seq tumor CPT0168270009 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 158294814 BAM S16_L001_R1 unaligned CPTAC3 6fa3e85c-336a-4f18-9664-d70307d7e95e 77fb240e79cd97e9cda2fa29631dfd79 {"aliquot_tag": "ALQ_7c08c9d1", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01818.miRNA-Seq.T.hg38 C3N-01818 GBM miRNA-Seq tumor CPT0168270009 ab508430-747f-415e-b88b-f16c15b8cf34_mirnaseq_gdc_realn.bam 178307549 BAM harmonized CPTAC3 86de9b06-e632-4289-8bc9-da931ec12172 570ee27c5db9a4868fd206b4aea6e53a {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor"} -C3N-01818.RNA-Seq.chimeric.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.chimeric.gdc_realn.bam 28862010 BAM chimeric harmonized CPTAC3 bfb3ad39-3058-4efe-96be-bf3537da36a6 4689bd55829033af91c9e3bf45602aac {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor"} -C3N-01818.RNA-Seq.genomic.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.genomic.gdc_realn.bam 7548885177 BAM genomic harmonized CPTAC3 b30b0ae8-48bf-4a91-81bf-dfb300f064bc 2190e1d6aa2e7fab2cf04d96bafaf27d {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor"} -C3N-01818.RNA-Seq.S7_L002_R1.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3317624857 FASTQ S7_L002_R1 unaligned CPTAC3 b0e38c05-ac09-4c1c-bb1d-b548599b093b 5870a6a75630d031833ec7ecd6546669 {"aliquot_tag": "ALQ_7c08c9d1", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01818.RNA-Seq.S7_L002_R2.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3421335754 FASTQ S7_L002_R2 unaligned CPTAC3 71ab0297-dec9-45f2-a48a-37d19aa41426 d78e787d39da177126fdd68bd303e584 {"aliquot_tag": "ALQ_7c08c9d1", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01818.RNA-Seq.transcriptome.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.transcriptome.gdc_realn.bam 10323609348 BAM transcriptome harmonized CPTAC3 f94ae69a-d34e-4f2a-a5a7-3263ae2e7f51 c55f76c592897f82ce33be7d43c8e2ae {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor"} -C3N-01818.WGS.N C3N-01818 GBM WGS blood_normal CPT0168320002 CPT0168320002.WholeGenome.RP-1303.bam 58347178726 BAM aligned CPTAC3 42569fa7-e7fe-4002-bd5f-9ed5af859700 8bacd5c98dd00e8df015d6a3d4375204 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01818.WGS.N.hg38 C3N-01818 GBM WGS blood_normal CPT0168320002 bd504223-27b1-4c70-af68-6985b7e5d23b_wgs_gdc_realn.bam 85455169092 BAM harmonized CPTAC3 177f02b8-d8fc-4da9-9619-411582a25cd7 286b6bf1205fdecd9ec023c6589f87d3 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01818.WGS.T C3N-01818 GBM WGS tumor CPT0168270006 CPT0168270006.WholeGenome.RP-1303.bam 62851912865 BAM aligned CPTAC3 50e010ce-650a-4c51-98bc-c3e971461052 ac4b1a72feafe236d74b7f65a14751e1 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor"} -C3N-01818.WGS.T.hg38 C3N-01818 GBM WGS tumor CPT0168270006 f9340864-be80-405e-a3a3-e0b123762976_wgs_gdc_realn.bam 91961216211 BAM harmonized CPTAC3 22e2c641-d4cd-46cf-ab29-697cad876617 c7f4090390e1f9655e8f71da3d7a0ce1 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor"} -C3N-01818.WXS.N C3N-01818 GBM WXS blood_normal CPT0168320002 CPT0168320002.WholeExome.RP-1303.bam 36243803797 BAM aligned CPTAC3 b413e7e4-1cf8-4c32-84fc-d770caaa046b c8f0eee11654d07b5df900bf2d833352 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01818.WXS.N.hg38 C3N-01818 GBM WXS blood_normal CPT0168320002 bd504223-27b1-4c70-af68-6985b7e5d23b_wxs_gdc_realn.bam 48343240872 BAM harmonized CPTAC3 f233f5da-c7e9-45e8-9c93-bd18b618d4b9 24627a93091899749976428980e36982 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01818.WXS.T C3N-01818 GBM WXS tumor CPT0168270006 CPT0168270006.WholeExome.RP-1303.bam 31671952321 BAM aligned CPTAC3 f14f1716-e463-4ca3-99ec-e3f2bef9c83f c6023b74eefda700bb08b3426a254c7e {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor"} -C3N-01818.WXS.T.hg38 C3N-01818 GBM WXS tumor CPT0168270006 f9340864-be80-405e-a3a3-e0b123762976_wxs_gdc_realn.bam 42399077248 BAM harmonized CPTAC3 4da3c9fd-7357-4d0f-8d0c-10c9e67f06fc 1418d6dc5ebae3cb6f766ad5ea26e1a9 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor"} -C3N-01823.DUP_dd07c2ca.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM aligned CPTAC3 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -C3N-01823.DUP_dd07c2ca.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM harmonized CPTAC3 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor"} -C3N-01823.MethArray.Green.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 509ee701-0c21-43df-91ae-639f9ac26949 83f25435b7efbfe27f65bc68ce1add51 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.MethArray.Green.T C3N-01823 LUAD Methylation_Array tumor CPT0097580009 202234380099_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a9d223e8-ecf4-4224-ada9-b997b22d90cd eafe63ef2855149f2a321b787bcec04a {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor"} -C3N-01823.MethArray.Red.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 1d79c083-5d16-4660-8b42-091f086f9305 a0a890e789eed03f20b940d6e9ac679c {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.MethArray.Red.T C3N-01823 LUAD Methylation_Array tumor CPT0097580009 202234380099_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 caecdc03-3349-4043-83db-b70e4978aedb ea10dad289292ed9bdf36aef0fc5a672 {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor"} -C3N-01823.miRNA-Seq.A.hg38 C3N-01823 LUAD miRNA-Seq tissue_normal CPT0097600006 9d93104b-90cc-4e89-8495-a8303d48ee61_mirnaseq_gdc_realn.bam 261148267 BAM harmonized CPTAC3 13d8de10-6beb-443f-8e38-dcab74fcf076 e61148cf388ee295e7db45a43a8209eb {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.miRNA-Seq.S27_L007_R1.T C3N-01823 LUAD miRNA-Seq tumor CPT0097580006 181108_UNC31-K00269_0163_BH23TVBBXY_ATTCCT_S27_L007_R1_001.unaln.bam 181145635 BAM S27_L007_R1 unaligned CPTAC3 44c44219-369c-443b-a622-e0ca20b49492 c112d2fda9c8ae369d01523e18abad55 {"aliquot_tag": "ALQ_4bf1052f", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01823.miRNA-Seq.S33_L008_R1.A C3N-01823 LUAD miRNA-Seq tissue_normal CPT0097600006 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L008_R1_001.unaln.bam 240001101 BAM S33_L008_R1 unaligned CPTAC3 df22e3f2-b957-4266-9dbd-f422404ed092 a499bc639f0533250506a4af3e425b87 {"aliquot_tag": "ALQ_fd153c40", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.miRNA-Seq.T.hg38 C3N-01823 LUAD miRNA-Seq tumor CPT0097580006 374db546-5748-4389-89f6-8f9d15e9db64_mirnaseq_gdc_realn.bam 195280826 BAM harmonized CPTAC3 b11966fa-5430-4256-9399-40b2e01ba84f 4b1739f1a8c20be6bf7a75aebbd99717 {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor"} -C3N-01823.RNA-Seq.chimeric.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.chimeric.gdc_realn.bam 53168861 BAM chimeric harmonized CPTAC3 7ca06133-108d-45c0-8b0c-851307c6a56f 40213ed797ed03985b7bb85c22a54400 {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.RNA-Seq.chimeric.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.chimeric.gdc_realn.bam 85947326 BAM chimeric harmonized CPTAC3 fd50171e-9172-4a8c-8b79-dcc5198d9480 f3469bde8f6c8534243567486c9d9d1d {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor"} -C3N-01823.RNA-Seq.genomic.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.genomic.gdc_realn.bam 7170292717 BAM genomic harmonized CPTAC3 ff1ee818-3c64-49aa-bfdc-6cfafa2860a2 06d5ffaf777a149899623e433877a4be {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.RNA-Seq.genomic.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.genomic.gdc_realn.bam 10559177157 BAM genomic harmonized CPTAC3 35ee6f05-409f-4b1f-a0ce-714856c5ed61 49da90a24dcea13eb14bbc26a7fd0565 {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor"} -C3N-01823.RNA-Seq.S2_L001_R1.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R1_001.fastq.gz 3258528387 FASTQ S2_L001_R1 unaligned CPTAC3 a3a8c329-94a6-46c4-8fc3-a1cea064d903 49f7d6dff89b9368d2b3fb4e13524397 {"aliquot_tag": "ALQ_fd153c40", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.RNA-Seq.S2_L001_R2.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R2_001.fastq.gz 3613132571 FASTQ S2_L001_R2 unaligned CPTAC3 7973b618-d910-42da-9305-4c328f719b2e 036e16a07ad829442a0d4fa91a81a453 {"aliquot_tag": "ALQ_fd153c40", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.RNA-Seq.S55_L006_R1.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R1_001.fastq.gz 4598764700 FASTQ S55_L006_R1 unaligned CPTAC3 5b45d19d-bdea-4e24-a7d7-7295f8f0781a 4a1f6f912d19519b15052b7d369eb2d2 {"aliquot_tag": "ALQ_4bf1052f", "sample": "S55", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01823.RNA-Seq.S55_L006_R2.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R2_001.fastq.gz 5141440090 FASTQ S55_L006_R2 unaligned CPTAC3 66f370eb-13cf-488f-b531-111714b86e96 9ece3c7276c5c49e23aa93f8538aa8d3 {"aliquot_tag": "ALQ_4bf1052f", "sample": "S55", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01823.RNA-Seq.transcriptome.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.transcriptome.gdc_realn.bam 8344124206 BAM transcriptome harmonized CPTAC3 46fdd4bc-8bc1-4882-bc11-7cab58b1fd55 7eee298132b3b635ce4829b132423d5f {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.RNA-Seq.transcriptome.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.transcriptome.gdc_realn.bam 11363680450 BAM transcriptome harmonized CPTAC3 cf80a919-2ab1-4d84-a3a3-15b9dba1c393 9ead23749bb0542fb7e0a5d001379612 {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor"} -C3N-01823.WGS.A C3N-01823 LUAD WGS tissue_normal CPT0097600009 CPT0097600009.WholeGenome.RP-1303.bam 62078209737 BAM aligned CPTAC3 2852fc32-95fc-4262-9587-4964a971024c c8e9e9ffd1c7981d7b62f54d08d5af83 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.WGS.A.hg38 C3N-01823 LUAD WGS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wgs_gdc_realn.bam 91356898324 BAM harmonized CPTAC3 43e69023-7983-4e5d-b4aa-a5d3173681a6 730306133cbf8d474cdad4592a0361af {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.WGS.N C3N-01823 LUAD WGS blood_normal CPT0097610002 CPT0097610002.WholeGenome.RP-1303.bam 61052134386 BAM aligned CPTAC3 5c696797-28f6-416a-b769-967313645a8e 0b86cdcd69fea5c76e2b064f51b5dc1b {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01823.WGS.N.hg38 C3N-01823 LUAD WGS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wgs_gdc_realn.bam 89541195809 BAM harmonized CPTAC3 59fd9c47-a049-4483-90bf-3650711651ee 1d83c76bafae811ea4b81e87b3a0edb3 {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01823.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009 CPT0097580009.WholeGenome.RP-1303.bam 65656450281 BAM aligned CPTAC3 c85d58e0-c631-494c-bd98-314a1dc8134e 66c86771c4dc933a8d6bc193c02d6d63 {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor"} -C3N-01823.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wgs_gdc_realn.bam 96055710690 BAM harmonized CPTAC3 cfcf2f7b-9f70-47a0-a2f0-d864ba6326ad ff311311a00abf25d13ba1cd79fd3578 {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor"} -C3N-01823.WXS.A C3N-01823 LUAD WXS tissue_normal CPT0097600009 CPT0097600009.WholeExome.RP-1303.bam 34217317088 BAM aligned CPTAC3 771f8925-7283-4736-8e3e-f126c481e2f1 82c84f0a3406f45f76094bb7708a5972 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.WXS.A.hg38 C3N-01823 LUAD WXS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wxs_gdc_realn.bam 46062396631 BAM harmonized CPTAC3 ae1ed438-07f1-44aa-9690-121cfdb635e9 e8d141483f556977231f0e4be01c39eb {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01823.WXS.N C3N-01823 LUAD WXS blood_normal CPT0097610002 CPT0097610002.WholeExome.RP-1303.bam 26376253830 BAM aligned CPTAC3 9609fe2a-7678-4fb7-aed1-37decce3b4a1 662777ce742428bf53774cd84174dcb2 {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01823.WXS.N.hg38 C3N-01823 LUAD WXS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wxs_gdc_realn.bam 35435908121 BAM harmonized CPTAC3 a59668f0-be1f-4eef-ac04-16e2a8d48d5f b0b049ff7b05bb08e037ba1e8ab596d7 {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01823.WXS.T C3N-01823 LUAD WXS tumor CPT0097580009 CPT0097580009.WholeExome.RP-1303.bam 44032320229 BAM aligned CPTAC3 3b24fc5b-267c-48ef-a8aa-6454383c5510 2e674956e05723940af2db20f3b1c9ac {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor"} -C3N-01823.WXS.T.hg38 C3N-01823 LUAD WXS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wxs_gdc_realn.bam 59887110671 BAM harmonized CPTAC3 4041925d-db9d-4daf-85da-8170f8864174 7ec0c47e58d8ac0693252094d54e780b {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor"} -C3N-01825.MethArray.Green.T C3N-01825 UCEC Methylation_Array tumor CPT0097710009 202234380054_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b1b2e295-1918-4f45-8012-ca9b86c0e45f 03480cbaeb97b5025bb43ec77619e41c {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor"} -C3N-01825.MethArray.Red.T C3N-01825 UCEC Methylation_Array tumor CPT0097710009 202234380054_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 d6efa57b-46aa-4fd0-a252-7c2613c4fb2c 88dcdde8b18fd7c4a724f19873906457 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_71e99535.MethArray.Green.T C3N-01825 UCEC Methylation_Array tumor CPT0097730006 203027390034_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 75510140-ddf8-4f9d-9fc2-fed1fc4664ef f10207e7dec6315edfacfb80a40414eb {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_71e99535.MethArray.Red.T C3N-01825 UCEC Methylation_Array tumor CPT0097730006 203027390034_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 e7e485e4-b7c8-439d-bcc1-e3e63535fbcd f7f118372edd06a0886f984b78c778ca {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_71e99535.WGS.T C3N-01825 UCEC WGS tumor CPT0097730006 CPT0097730006.WholeGenome.RP-1303.bam 59800912456 BAM aligned CPTAC3 c50da7a7-d110-4849-973a-5e9bc8e323eb 026515590459a4293d1d1c4171a647a9 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_71e99535.WGS.T.hg38 C3N-01825 UCEC WGS tumor CPT0097730006 42791ee5-99f8-4230-940c-d17609188034_wgs_gdc_realn.bam 86915536728 BAM harmonized CPTAC3 45a82c6e-c6d4-4716-9626-01ddb64f0b4e 40543ab128c453ca527865e13d13a1e1 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_71e99535.WXS.T C3N-01825 UCEC WXS tumor CPT0097730006 CPT0097730006.WholeExome.RP-1303.bam 20447493334 BAM aligned CPTAC3 34ec2553-a029-4ee3-9f97-7e2472d7e622 9227527140db19429294e5b9b17e15a3 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_71e99535.WXS.T.hg38 C3N-01825 UCEC WXS tumor CPT0097730006 42791ee5-99f8-4230-940c-d17609188034_wxs_gdc_realn.bam 28245493993 BAM harmonized CPTAC3 d84c30fd-5552-408c-9f32-7fafcfd95b50 5375bee58b296f7debc10f99602037d7 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_e15688a4.miRNA-Seq.S5_L005_R1.T C3N-01825 UCEC miRNA-Seq tumor CPT0097730009 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L005_R1_001.unaln.bam 297846600 BAM S5_L005_R1 unaligned CPTAC3 f5b7ec01-eefb-43ad-95ee-7f4d42b8e34d 0c29d24ae4b92b7dca543b8d0140fd0f {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_e15688a4.miRNA-Seq.T.hg38 C3N-01825 UCEC miRNA-Seq tumor CPT0097730009 2f0a37e7-e5bf-4bc7-a449-3d9c21031b2e_mirnaseq_gdc_realn.bam 335008133 BAM harmonized CPTAC3 e07156c8-18ac-46d7-a551-40d8f4958b74 7fde5dc2e30634b5629191f8abeed1d9 {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_e15688a4.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.chimeric.gdc_realn.bam 36344490 BAM chimeric harmonized CPTAC3 b2add081-ab67-4af6-89b5-ff7d86fd19d2 aca5924f28efba87bc9ec924e657e13b {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_e15688a4.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.genomic.gdc_realn.bam 8969946155 BAM genomic harmonized CPTAC3 c7e55e3b-2fb9-4e18-bb4d-76b8b4791321 6c371b3e3c2ed8fee8497361d05ec28a {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_e15688a4.RNA-Seq.S28_L008_R1.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R1_001.fastq.gz 4016926868 FASTQ S28_L008_R1 unaligned CPTAC3 419d417d-b526-4604-99d8-dcda3c1e04a2 8c7c0f5aea734bfd8a90784074253913 {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_e15688a4.RNA-Seq.S28_L008_R2.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R2_001.fastq.gz 4314809464 FASTQ S28_L008_R2 unaligned CPTAC3 a94be969-d00d-4dc9-bbf5-202369fe602a b8a4950db0555463c9cad9112648fffb {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S28", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01825.REP_e15688a4.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.transcriptome.gdc_realn.bam 11689383752 BAM transcriptome harmonized CPTAC3 295123ed-5a18-4822-8380-35aec955c76f d100575d7f8020a1243dc951af5146c5 {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.chimeric.gdc_realn.bam 86926400 BAM chimeric harmonized CPTAC3 d7b5179d-63cb-47f5-9dac-faf1fdbc19f1 2c4e49102d9207f148abb852cc87e379 {"aliquot_tag": "ALQ_b29c655", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.chimeric.gdc_realn.bam 214221323 BAM chimeric harmonized CPTAC3 a49572ea-90c8-417a-9708-88822b8ea072 79b50fc2febb967ea808072d1eba4a9c {"aliquot_tag": "ALQ_1edbb243", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.genomic.gdc_realn.bam 7916984281 BAM genomic harmonized CPTAC3 e4740b8e-a683-40b8-9122-27a7f2b796f5 3467957b17104dc00c84102837b83034 {"aliquot_tag": "ALQ_b29c655", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.genomic.gdc_realn.bam 10153785310 BAM genomic harmonized CPTAC3 c320a0a0-1eee-41a3-bb66-42795186ca4f f993d5ebb8ec457bda63fc413593e90a {"aliquot_tag": "ALQ_1edbb243", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.S56_L006_R1.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R1_001.fastq.gz 3649504839 FASTQ S56_L006_R1 unaligned CPTAC3 fb6e7290-6e05-40fd-b122-340633db8e34 6e27d7f5cc7e0be3bd7675c075ddc51d {"aliquot_tag": "ALQ_b29c655", "sample": "S56", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.S56_L006_R2.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R2_001.fastq.gz 3925202348 FASTQ S56_L006_R2 unaligned CPTAC3 ee34816a-0060-45f6-9813-334207970349 05040912ef651663e59b10e0ecd6aca5 {"aliquot_tag": "ALQ_b29c655", "sample": "S56", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.S82_R1.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R1_001.fastq.gz 5750675269 FASTQ S82_R1 unaligned CPTAC3 41b126f1-4aab-4727-b926-8ee210e768a3 c75eca488a4eec8091d0a7084ca3981b {"aliquot_tag": "ALQ_1edbb243", "sample": "S82", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.S82_R2.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R2_001.fastq.gz 5917648328 FASTQ S82_R2 unaligned CPTAC3 bec325d5-9452-49c8-8ef4-b389a4bee8a3 b047f9e9a7a1679aec6900e240aada0a {"aliquot_tag": "ALQ_1edbb243", "sample": "S82", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.transcriptome.gdc_realn.bam 7595758212 BAM transcriptome harmonized CPTAC3 398129c7-e54f-4423-b5d4-2a3dfb374ddc 2131b99aaece3db93f78043e71373477 {"aliquot_tag": "ALQ_b29c655", "gdc_sample_type": "Primary Tumor"} -C3N-01825.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.transcriptome.gdc_realn.bam 3626293454 BAM transcriptome harmonized CPTAC3 b1b1c0ad-645a-4a8f-8c33-73faa8535b9b 5aee52ecafc033188bf4c99c9c6aa06b {"aliquot_tag": "ALQ_1edbb243", "gdc_sample_type": "Primary Tumor"} -C3N-01825.WGS.N C3N-01825 UCEC WGS blood_normal CPT0097750002 CPT0097750002.WholeGenome.RP-1303.bam 59370925934 BAM aligned CPTAC3 37d69863-1e89-48e5-a8f8-0e6861762b99 b65210e53c1afad0f8d1d5be1f77c271 {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01825.WGS.N.hg38 C3N-01825 UCEC WGS blood_normal CPT0097750002 e85c33bd-3b8d-4bad-9735-e48f81491019_wgs_gdc_realn.bam 87791073707 BAM harmonized CPTAC3 522582a7-24d6-4b9a-9e6a-5116e3ca5c72 26eaee75872fe5c52d07a18587eb8890 {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01825.WGS.T C3N-01825 UCEC WGS tumor CPT0097710009 CPT0097710009.WholeGenome.RP-1303.bam 62049197185 BAM aligned CPTAC3 5f8d88f4-c399-41b2-9e81-2a46297a87d7 19b09eee700ee0aeeb7acdfb88d713b3 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor"} -C3N-01825.WGS.T.hg38 C3N-01825 UCEC WGS tumor CPT0097710009 3ec666f3-df1c-438d-bcc1-555e4c7db92b_wgs_gdc_realn.bam 88870399289 BAM harmonized CPTAC3 eb0e4fbc-5442-43f8-ae0e-4d8d6cb67f59 591d27324fd4a8989b404a1b89199d66 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor"} -C3N-01825.WXS.N C3N-01825 UCEC WXS blood_normal CPT0097750002 CPT0097750002.WholeExome.RP-1303.bam 37020388029 BAM aligned CPTAC3 75503034-28e8-4297-b2b3-095730e2b53a c7df3d9a16a69fdecf707ecc5888c83d {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01825.WXS.N.hg38 C3N-01825 UCEC WXS blood_normal CPT0097750002 e85c33bd-3b8d-4bad-9735-e48f81491019_wxs_gdc_realn.bam 51270405165 BAM harmonized CPTAC3 bb985682-1aad-4aa0-acd4-039b2e5f2b49 ec72014149ee477dbbb006c973f263ce {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal"} -C3N-01825.WXS.T C3N-01825 UCEC WXS tumor CPT0097710009 CPT0097710009.WholeExome.RP-1303.bam 51333313128 BAM aligned CPTAC3 dc05be9d-0e08-4235-87a0-f88fbf139422 d4dcfabf384812b690b34d8d066d2692 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor"} -C3N-01825.WXS.T.hg38 C3N-01825 UCEC WXS tumor CPT0097710009 3ec666f3-df1c-438d-bcc1-555e4c7db92b_wxs_gdc_realn.bam 71288873715 BAM harmonized CPTAC3 e079441f-c166-44ee-b53b-33a6f6fcff85 93ff1fdf0fb39e86a1892e1f566377ec {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor"} -C3N-01828.MethArray.Green.A C3N-01828 CCRCC Methylation_Array tissue_normal CPT0097880006 204930630071_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6f9d6175-f344-4c3e-938e-de25d712572a 9833018a56148108049be7e09bafdac8 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.MethArray.Green.T C3N-01828 CCRCC Methylation_Array tumor CPT0097850009 202234360009_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 eb5de2f6-7a85-457c-b52d-1f332af61c0a 4ebde2262daa0ccc02cf8f7ca25be297 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor"} -C3N-01828.MethArray.Red.A C3N-01828 CCRCC Methylation_Array tissue_normal CPT0097880006 204930630071_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 f499f00f-906b-4911-a876-a3af1deb91f9 b502faec3d159a9a3cb5adcc30a2782e {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.MethArray.Red.T C3N-01828 CCRCC Methylation_Array tumor CPT0097850009 202234360009_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 9776f722-5dfe-4bbe-b79d-32cb69f9793f 5fbbc6feb699f1f1eeb79c53812f8226 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor"} -C3N-01828.miRNA-Seq.A.hg38 C3N-01828 CCRCC miRNA-Seq tissue_normal CPT0097880009 4d774f02-cfa0-4887-bdca-a31d251c9d02_mirnaseq_gdc_realn.bam 219048131 BAM harmonized CPTAC3 210a1236-d53a-418a-9332-d9eb5345f829 0a96e067dce48e56d92ea1131e362d79 {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.miRNA-Seq.S28_L003_R1.T C3N-01828 CCRCC miRNA-Seq tumor CPT0097850006 181119_UNC31-K00269_0165_AH27WCBBXY_TGACCA_S28_L003_R1_001.unaln.bam 227721460 BAM S28_L003_R1 unaligned CPTAC3 f0828ad7-8106-4011-9db0-6973d94796a4 c19f790b709af79b3a6a7c82709a79ce {"aliquot_tag": "ALQ_fffd240", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01828.miRNA-Seq.S29_L002_R1.A C3N-01828 CCRCC miRNA-Seq tissue_normal CPT0097880009 181119_UNC31-K00269_0165_AH27WCBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 199593545 BAM S29_L002_R1 unaligned CPTAC3 e64106e7-60f9-4d26-bb92-f616d9dcc9ff bb79288add5de99492c35cb2c85b8a09 {"aliquot_tag": "ALQ_67d00b60", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.miRNA-Seq.T.hg38 C3N-01828 CCRCC miRNA-Seq tumor CPT0097850006 4b68c6bd-7978-4aaa-bfe6-eb65ad96f998_mirnaseq_gdc_realn.bam 252281406 BAM harmonized CPTAC3 12b5c994-b9bb-4956-9d92-c995d0f807ff 91739096731e200012d3ed86da4edb99 {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor"} -C3N-01828.RNA-Seq.chimeric.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.chimeric.gdc_realn.bam 27535798 BAM chimeric harmonized CPTAC3 e6d7cd01-5ccd-4e9f-b998-ecdfa40d9d36 812beee48e12be7a7ad70eaa18c22d4c {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.RNA-Seq.chimeric.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.chimeric.gdc_realn.bam 28928878 BAM chimeric harmonized CPTAC3 70dded1f-a750-48e3-9ff2-823ee7379b25 7fd2b1fbf5e0cb828a6c122cd6286f83 {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor"} -C3N-01828.RNA-Seq.genomic.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.genomic.gdc_realn.bam 8075345403 BAM genomic harmonized CPTAC3 4bc1eafe-cc95-4990-bc81-5b4b101cafb0 e4e6a147867be32941a2cfa712d108c2 {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.RNA-Seq.genomic.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.genomic.gdc_realn.bam 7912355784 BAM genomic harmonized CPTAC3 6a79ba55-9741-482e-9d1b-2136ae153385 d7cd5832ccb48525727a9a968e6371d7 {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor"} -C3N-01828.RNA-Seq.S5_L002_R1.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3314280612 FASTQ S5_L002_R1 unaligned CPTAC3 88455df6-837c-46c9-af08-4cdb5d74b947 66958c7f3b06d5c403f3af4fe546fc4c {"aliquot_tag": "ALQ_67d00b60", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.RNA-Seq.S5_L002_R2.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R2_001.fastq.gz 3699220691 FASTQ S5_L002_R2 unaligned CPTAC3 01bb34cf-1129-4513-ab29-bdce592de42b f6530f38080216d186534aaa43990638 {"aliquot_tag": "ALQ_67d00b60", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.RNA-Seq.S6_L008_R1.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3539841466 FASTQ S6_L008_R1 unaligned CPTAC3 788342e9-7521-48ec-9bce-3a8c71bc6dc2 9349249ebe2c2ad97adee5db33c92850 {"aliquot_tag": "ALQ_fffd240", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01828.RNA-Seq.S6_L008_R2.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3939708570 FASTQ S6_L008_R2 unaligned CPTAC3 bcf7727b-fc8e-4fbc-91ed-1f27520ea6c5 af5dda7b5c124286d8582985909f29d8 {"aliquot_tag": "ALQ_fffd240", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01828.RNA-Seq.transcriptome.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.transcriptome.gdc_realn.bam 8657613822 BAM transcriptome harmonized CPTAC3 41b38918-c894-4c62-8d6a-5ef45ee41099 88f26df06cfc350555c0a97f2858a132 {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.RNA-Seq.transcriptome.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.transcriptome.gdc_realn.bam 9137680251 BAM transcriptome harmonized CPTAC3 61a828ed-ab75-4345-9b7d-869ee4477701 e0456cb3f53dc5122cafb60e53f5893d {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor"} -C3N-01828.WGS.A C3N-01828 CCRCC WGS tissue_normal CPT0097880006 CPT0097880006.WholeGenome.RP-1303.bam 65514632647 BAM aligned CPTAC3 21051ce7-85f0-4a40-b6cd-53fbc917dd8e b34dee4907a3090b48b2eea797cdb975 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.WGS.A.hg38 C3N-01828 CCRCC WGS tissue_normal CPT0097880006 fff5df36-59bc-4e34-a194-e50179469f0b_wgs_gdc_realn.bam 96795677214 BAM harmonized CPTAC3 b1d36d7a-66ef-4209-998c-6dfa4c848a1c 7aee731da24af7c7648326c30566ceeb {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.WGS.N C3N-01828 CCRCC WGS blood_normal CPT0097890002 CPT0097890002.WholeGenome.RP-1303.bam 58935249933 BAM aligned CPTAC3 77fdbde2-092c-4e25-b7f1-2410388cb6e8 1b35654a16c5eaec7626ef721955b7e9 {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01828.WGS.N.hg38 C3N-01828 CCRCC WGS blood_normal CPT0097890002 a56edf1b-1241-456b-8142-3d9fa753b19c_wgs_gdc_realn.bam 88073602844 BAM harmonized CPTAC3 20d02643-385b-4abc-941e-7432e8e0755e 8d86c4aeb837b2aab2576be1b1265639 {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01828.WGS.T C3N-01828 CCRCC WGS tumor CPT0097850009 CPT0097850009.WholeGenome.RP-1303.bam 63562426841 BAM aligned CPTAC3 1cdcfd0b-0b2e-4ecc-ab9a-9d7b13728e16 02d8787f5babd2a2e52a677313136c90 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor"} -C3N-01828.WGS.T.hg38 C3N-01828 CCRCC WGS tumor CPT0097850009 5f133818-f707-4568-a7cb-294820a3a88c_wgs_gdc_realn.bam 95734481344 BAM harmonized CPTAC3 0ba5a705-ae28-4f81-bb85-d225ecb27c47 ac726aae83f89d92b42993989dda7d17 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor"} -C3N-01828.WXS.A C3N-01828 CCRCC WXS tissue_normal CPT0097880006 CPT0097880006.WholeExome.RP-1303.bam 21488636727 BAM aligned CPTAC3 ad9eca42-18c7-436a-bde1-6f1ec4f9e176 67993a81d3f4a5e36296e0a8553336d8 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.WXS.A.hg38 C3N-01828 CCRCC WXS tissue_normal CPT0097880006 fff5df36-59bc-4e34-a194-e50179469f0b_wxs_gdc_realn.bam 29123756129 BAM harmonized CPTAC3 07f7bd84-f1de-488b-a392-990a74dcdaf8 e06d2d25ac10473e73a8165a250eacb4 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01828.WXS.N C3N-01828 CCRCC WXS blood_normal CPT0097890002 CPT0097890002.WholeExome.RP-1303.bam 25166119718 BAM aligned CPTAC3 c2518200-37da-404a-856e-f7022ee4faa0 11ff05142088b7422fe50ca2e108d620 {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01828.WXS.N.hg38 C3N-01828 CCRCC WXS blood_normal CPT0097890002 a56edf1b-1241-456b-8142-3d9fa753b19c_wxs_gdc_realn.bam 34563300078 BAM harmonized CPTAC3 8ec2dc96-1d51-49f3-afb1-e9e0e6659e38 d4e68613cf32e2a7ad25bc310e5bda3d {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal"} -C3N-01828.WXS.T C3N-01828 CCRCC WXS tumor CPT0097850009 CPT0097850009.WholeExome.RP-1303.bam 32074976794 BAM aligned CPTAC3 8e928230-86a8-4996-ad85-7ab208534490 c8b586e3a12b1aadf75b4014478b473e {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor"} -C3N-01828.WXS.T.hg38 C3N-01828 CCRCC WXS tumor CPT0097850009 5f133818-f707-4568-a7cb-294820a3a88c_wxs_gdc_realn.bam 44314221823 BAM harmonized CPTAC3 f95370e5-138f-4b67-be74-2a0e2d51138d 154d7c88b38806b0a2ffad258a15b599 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor"} -C3N-01830.MethArray.Green.T C3N-01830 UCEC Methylation_Array tumor CPT0097300009 202234360028_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5eaba63a-2c53-48a5-bc3c-9701eaa0af38 76de72f3a92c52f53cdeb1a6b16c9619 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor"} -C3N-01830.MethArray.Red.T C3N-01830 UCEC Methylation_Array tumor CPT0097300009 202234360028_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 fedbab61-1243-49df-9b92-7c1977feabd5 5a15cb025ceaff5a7fa639cf5f3c4575 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor"} -C3N-01830.miRNA-Seq.A.hg38 C3N-01830 UCEC miRNA-Seq tissue_normal CPT0097320009 a0ba4db4-1765-4f08-8c7f-cfb4ec70cc8d_mirnaseq_gdc_realn.bam 318039760 BAM harmonized CPTAC3 3285ae74-9453-4473-b51b-bab502ed2ceb 40fed72a98dcb8f60bc83ef767f46cb1 {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.miRNA-Seq.S14_L005_R1.A C3N-01830 UCEC miRNA-Seq tissue_normal CPT0097320009 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L005_R1_001.unaln.bam 280859771 BAM S14_L005_R1 unaligned CPTAC3 25b793ab-6f2b-4144-ac14-6fc538b4a41d fa2f32ab62375223cbd8439c4fea7d86 {"aliquot_tag": "ALQ_47a7e302", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.miRNA-Seq.S28_L007_R1.T C3N-01830 UCEC miRNA-Seq tumor CPT0097300006 181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L007_R1_001.unaln.bam 196843215 BAM S28_L007_R1 unaligned CPTAC3 de8fd048-5653-4cca-9c22-59d99572a28f c0dd99798cb897c72bd87cb046d547ec {"aliquot_tag": "ALQ_add8adf3", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01830.miRNA-Seq.T.hg38 C3N-01830 UCEC miRNA-Seq tumor CPT0097300006 6eac3b83-3eb2-4f8f-83c4-4df1ca6352b3_mirnaseq_gdc_realn.bam 213660747 BAM harmonized CPTAC3 3012769f-5f2d-4091-9f36-f79a1d5f13ef 1edb0d69f3e28131d5af156610b177be {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.chimeric.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.chimeric.gdc_realn.bam 27054554 BAM chimeric harmonized CPTAC3 3e61d21b-5945-41b2-8088-a9fef2c9e4a8 033b18d60769c97207c0dc54efae407d {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.RNA-Seq.chimeric.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.chimeric.gdc_realn.bam 62322117 BAM chimeric harmonized CPTAC3 d8edad04-db4d-4810-828c-8dadb1165a31 606885f843930cd091b84b95676b107e {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.chimeric.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.chimeric.gdc_realn.bam 205674444 BAM chimeric harmonized CPTAC3 9d604e42-ee33-49a1-b4b3-da8879ca4682 09d4c50dfa9dae9b9ceac3ec147ec3ef {"aliquot_tag": "ALQ_2eb908e8", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.genomic.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.genomic.gdc_realn.bam 8949382912 BAM genomic harmonized CPTAC3 b2868dbf-c281-49f3-81bc-4309ed3f4b7c 4ae629aba7a4d009209bba93848bd75d {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.RNA-Seq.genomic.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.genomic.gdc_realn.bam 8206766342 BAM genomic harmonized CPTAC3 45863fa6-e4f2-47ca-adfa-43e7275614f1 fe59766e515f9b5c52a6d29b20b3bc85 {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.genomic.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.genomic.gdc_realn.bam 9748994833 BAM genomic harmonized CPTAC3 80e58bb0-466b-449d-9f37-fb4ae536140a a18810cf2d7c863267567230b2a49755 {"aliquot_tag": "ALQ_2eb908e8", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.S21_L006_R1.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 3639573631 FASTQ S21_L006_R1 unaligned CPTAC3 ac9789d6-fac8-4e2e-8dd7-5607b8de5ff5 21322ab0d0e1a93e7b6271d6b3a9a880 {"aliquot_tag": "ALQ_47a7e302", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.RNA-Seq.S21_L006_R2.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 3880727184 FASTQ S21_L006_R2 unaligned CPTAC3 19eab5b2-9e9a-4cdd-a551-c9bd2838a92c 4d848f9c5523d0d3804f7166ab4d617e {"aliquot_tag": "ALQ_47a7e302", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.RNA-Seq.S58_L006_R1.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R1_001.fastq.gz 3630395279 FASTQ S58_L006_R1 unaligned CPTAC3 aaf08754-43f6-42f6-b119-8877fb53c583 719ef8e3132b2720fb777429a0ab800c {"aliquot_tag": "ALQ_add8adf3", "sample": "S58", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.S58_L006_R2.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R2_001.fastq.gz 4068659067 FASTQ S58_L006_R2 unaligned CPTAC3 f89ea58d-d97e-43bf-8cb5-7afe7f304350 fc851670ba207e332f6dd1899a0ac8f1 {"aliquot_tag": "ALQ_add8adf3", "sample": "S58", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.S94_R1.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R1_001.fastq.gz 6033965446 FASTQ S94_R1 unaligned CPTAC3 b31b6754-5586-4cf3-85be-34e309b8a98d aee8685519dc2e68f996bcd45dadf23a {"aliquot_tag": "ALQ_2eb908e8", "sample": "S94", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.S94_R2.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R2_001.fastq.gz 6233966189 FASTQ S94_R2 unaligned CPTAC3 ebe005b3-2880-431a-ac33-a92bec12b0f4 0a7ecffa7e7f57a2030a9a4d406dcc7f {"aliquot_tag": "ALQ_2eb908e8", "sample": "S94", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.transcriptome.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.transcriptome.gdc_realn.bam 10850923251 BAM transcriptome harmonized CPTAC3 5a5e6f24-e1b6-451b-9b7e-b06468de83fa 8559c413f5198c2b9a7e664f8dffeb2b {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.RNA-Seq.transcriptome.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.transcriptome.gdc_realn.bam 9264290669 BAM transcriptome harmonized CPTAC3 c0895164-3d63-4de0-8878-13d69b923355 3152c36fe52ef6e8fc84faf5405728ba {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor"} -C3N-01830.RNA-Seq.transcriptome.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.transcriptome.gdc_realn.bam 5339940710 BAM transcriptome harmonized CPTAC3 f479b50d-6505-4c5a-8728-6a4b5ab0d100 a8bf0e5deabbfd0b2216c993c150b85b {"aliquot_tag": "ALQ_2eb908e8", "gdc_sample_type": "Primary Tumor"} -C3N-01830.WGS.A C3N-01830 UCEC WGS tissue_normal CPT0097320006 CPT0097320006.WholeGenome.RP-1303.bam 61534784508 BAM aligned CPTAC3 3b610c6e-dfdd-4742-82ad-41055a4b639e bb2e55fd0156ec4f925e7a34ab53b503 {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.WGS.A.hg38 C3N-01830 UCEC WGS tissue_normal CPT0097320006 d2f91b7f-3ba9-4f92-9999-e34aaf39e8b6_wgs_gdc_realn.bam 89718257653 BAM harmonized CPTAC3 b58fd6d0-ace8-402f-962e-f88632a3b25b a12d29c7870f1682ece44dbdc2ac70d6 {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.WGS.N C3N-01830 UCEC WGS blood_normal CPT0097330002 CPT0097330002.WholeGenome.RP-1303.bam 66058617011 BAM aligned CPTAC3 bc64edb5-0091-4fcd-a5ba-85ab1638d126 97b7b7b349f9396f3661374fe600ac7c {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01830.WGS.N.hg38 C3N-01830 UCEC WGS blood_normal CPT0097330002 49c80b42-7539-4e7d-9a14-4f32f9a595e0_wgs_gdc_realn.bam 97256469793 BAM harmonized CPTAC3 b45fa8b4-1e73-4cd3-a4f5-0c82aaf1dac7 6275fd291fa80f2018aa0ec27a4d4eb9 {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01830.WGS.T C3N-01830 UCEC WGS tumor CPT0097300009 CPT0097300009.WholeGenome.RP-1303.bam 59924087607 BAM aligned CPTAC3 be29d023-65df-4356-af1f-8122a2fe8a35 fcb732c39bd09b959574f4c8a538a6bc {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor"} -C3N-01830.WGS.T.hg38 C3N-01830 UCEC WGS tumor CPT0097300009 7309ed28-37a6-470a-b971-4b1981c7bd9b_wgs_gdc_realn.bam 87941270170 BAM harmonized CPTAC3 4e433d06-26f9-4312-9e86-28e251bb06cf 2974f9f979103e59474310e0da56e34b {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor"} -C3N-01830.WXS.A C3N-01830 UCEC WXS tissue_normal CPT0097320006 CPT0097320006.WholeExome.RP-1303.bam 40880620021 BAM aligned CPTAC3 b13fb15e-700e-4996-b73f-7532f6099130 3ba83e717d5a841eb1bea41bddefde47 {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.WXS.A.hg38 C3N-01830 UCEC WXS tissue_normal CPT0097320006 d2f91b7f-3ba9-4f92-9999-e34aaf39e8b6_wxs_gdc_realn.bam 54098728240 BAM harmonized CPTAC3 0043084a-5de1-41fe-bb22-af0b2223e197 6ebbb3e5d3035dc8b8f1302bc55d847e {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01830.WXS.N C3N-01830 UCEC WXS blood_normal CPT0097330002 CPT0097330002.WholeExome.RP-1303.bam 37538929423 BAM aligned CPTAC3 4575eb6f-2923-42a9-875a-a4830a2b1fc4 ecdc9375582004b28469a035a5c5aa42 {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01830.WXS.N.hg38 C3N-01830 UCEC WXS blood_normal CPT0097330002 49c80b42-7539-4e7d-9a14-4f32f9a595e0_wxs_gdc_realn.bam 50496991656 BAM harmonized CPTAC3 48298649-34ec-4158-80c6-76111209b23b c473cbe99422f20090cf9cde18244d40 {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01830.WXS.T C3N-01830 UCEC WXS tumor CPT0097300009 CPT0097300009.WholeExome.RP-1303.bam 27651147723 BAM aligned CPTAC3 3590afbd-a4ab-4845-9821-3082b519c7b4 5477428383db043141f3f37de4624101 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor"} -C3N-01830.WXS.T.hg38 C3N-01830 UCEC WXS tumor CPT0097300009 7309ed28-37a6-470a-b971-4b1981c7bd9b_wxs_gdc_realn.bam 38900837272 BAM harmonized CPTAC3 e335589e-a5c6-4acb-9689-978c6b3ef3f1 85afa9a0fbe37ac1394c95a7ef756b98 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor"} -C3N-01842.MethArray.Green.T C3N-01842 LUAD Methylation_Array tumor CPT0098130009 202234380102_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 453d65ec-947e-4eab-80fa-87c9d29100f2 90af219903f30c57458fbe45a70cfec5 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor"} -C3N-01842.MethArray.Red.T C3N-01842 LUAD Methylation_Array tumor CPT0098130009 202234380102_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e971bbb7-7074-4f9b-8202-0c0e4e900396 5ddd9e40165a293950e61baa9a443286 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor"} -C3N-01842.miRNA-Seq.S29_L007_R1.T C3N-01842 LUAD miRNA-Seq tumor CPT0098130006 181108_UNC31-K00269_0163_BH23TVBBXY_CAACTA_S29_L007_R1_001.unaln.bam 215987460 BAM S29_L007_R1 unaligned CPTAC3 7d1c204a-4b3a-45e6-8cfb-2383f1013d3d e49675e5d61ad3e84776e912e0a52f72 {"aliquot_tag": "ALQ_51f806c1", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01842.miRNA-Seq.T.hg38 C3N-01842 LUAD miRNA-Seq tumor CPT0098130006 1769e0a6-3b34-4b5b-9926-e7a090743eef_mirnaseq_gdc_realn.bam 234395036 BAM harmonized CPTAC3 9daf4cc4-b710-49af-9018-583d1c74b668 e982e15142acbe45d84627264a5f5b7f {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor"} -C3N-01842.RNA-Seq.chimeric.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.chimeric.gdc_realn.bam 76384445 BAM chimeric harmonized CPTAC3 143b8440-5470-4245-98e0-5ee9cff58d1b 8ee3d879e5745a14ddfb99bbe4cf6e68 {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor"} -C3N-01842.RNA-Seq.genomic.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.genomic.gdc_realn.bam 7747679143 BAM genomic harmonized CPTAC3 e4581ab4-36e9-4484-8adb-5cb80d350f60 cf22954d837f8fbda282d58458c70a0f {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor"} -C3N-01842.RNA-Seq.S57_L006_R1.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R1_001.fastq.gz 3597322967 FASTQ S57_L006_R1 unaligned CPTAC3 69d3152e-5984-45f8-9a59-726c9fd54827 1b958caeac26e176608327f7b6eed3c6 {"aliquot_tag": "ALQ_51f806c1", "sample": "S57", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01842.RNA-Seq.S57_L006_R2.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R2_001.fastq.gz 3853225498 FASTQ S57_L006_R2 unaligned CPTAC3 3aa0c988-0a67-41cd-a07e-b96f6c8b46b7 123eff09f36344f71932e2833ea10b33 {"aliquot_tag": "ALQ_51f806c1", "sample": "S57", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01842.RNA-Seq.transcriptome.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.transcriptome.gdc_realn.bam 8100084673 BAM transcriptome harmonized CPTAC3 b5420b6d-a11d-4e8b-af4b-982bbb303378 d65614a238823bb20de241c1f1cba4fb {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor"} -C3N-01842.WGS.N C3N-01842 LUAD WGS blood_normal CPT0098170002 CPT0098170002.WholeGenome.RP-1303.bam 76700917852 BAM aligned CPTAC3 56c09248-5b4c-4302-9c6d-a148ac0542ee 6067e0c5c3f1eef3eb3c199efe1f76a1 {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal"} -C3N-01842.WGS.N.hg38 C3N-01842 LUAD WGS blood_normal CPT0098170002 20dd5461-6505-48e7-b3d5-39e1d77be2de_wgs_gdc_realn.bam 113480017444 BAM harmonized CPTAC3 ca974bf0-2aef-4f42-9604-fa42b3d13105 5657e499b1d7f030d6c5f2c9441f59bb {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal"} -C3N-01842.WGS.T C3N-01842 LUAD WGS tumor CPT0098130009 CPT0098130009.WholeGenome.RP-1303.bam 55117290667 BAM aligned CPTAC3 fb649820-5ee4-4958-a867-8af6677a263c 68a5942ff623f2123e450ebdc2d55b03 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor"} -C3N-01842.WGS.T.hg38 C3N-01842 LUAD WGS tumor CPT0098130009 f370ca5a-c17b-4e60-b6b3-f0aee3f5b1c9_wgs_gdc_realn.bam 80726341564 BAM harmonized CPTAC3 2554d6a3-cac4-46e0-9c57-0da24005921e 5f28065ae910faf55718664e6db2d2d8 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor"} -C3N-01842.WXS.N C3N-01842 LUAD WXS blood_normal CPT0098170002 CPT0098170002.WholeExome.RP-1303.bam 43168569321 BAM aligned CPTAC3 e51cbfe9-2f22-4a28-a7e2-17a6044b3b3f 1b5fb5d730e40647d7060f0759cb4d90 {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal"} -C3N-01842.WXS.N.hg38 C3N-01842 LUAD WXS blood_normal CPT0098170002 20dd5461-6505-48e7-b3d5-39e1d77be2de_wxs_gdc_realn.bam 58316986065 BAM harmonized CPTAC3 39dc8e97-a4b9-4497-813f-24b2ac89fb3d 56bc8b359c1f6f8dddc7b73ff9dc8216 {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal"} -C3N-01842.WXS.T C3N-01842 LUAD WXS tumor CPT0098130009 CPT0098130009.WholeExome.RP-1303.bam 43906212871 BAM aligned CPTAC3 ea52234f-bfea-4247-a924-97a3956bc895 514114292c5e3d87d993d5d7790eda54 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor"} -C3N-01842.WXS.T.hg38 C3N-01842 LUAD WXS tumor CPT0098130009 f370ca5a-c17b-4e60-b6b3-f0aee3f5b1c9_wxs_gdc_realn.bam 60011309826 BAM harmonized CPTAC3 413290a2-7da6-4efe-856f-db41f9307ad6 f98dedc83ab44b1709c70514f16dfde8 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor"} -C3N-01843.MethArray.Green.T C3N-01843 UCEC Methylation_Array tumor CPT0098270009 202234370093_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d1151fdf-b232-4289-9ba8-5738301c2f44 3b4ca412e7ef75474fc1da9cbe6a0f15 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor"} -C3N-01843.MethArray.Red.T C3N-01843 UCEC Methylation_Array tumor CPT0098270009 202234370093_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e3820d12-943e-40fe-834d-47efb544a357 9bc0d7d77575dd3fdbb6b3612b7a0d98 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor"} -C3N-01843.miRNA-Seq.S30_L007_R1.T C3N-01843 UCEC miRNA-Seq tumor CPT0098270006 181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L007_R1_001.unaln.bam 180554692 BAM S30_L007_R1 unaligned CPTAC3 89288167-6eed-4133-9e54-ea0c61e0272d 0057c844cd652b7ae770db993aeb2eec {"aliquot_tag": "ALQ_22ecd2af", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01843.miRNA-Seq.T.hg38 C3N-01843 UCEC miRNA-Seq tumor CPT0098270006 e4ba3017-f72a-4170-835c-588b7671ec9a_mirnaseq_gdc_realn.bam 198852500 BAM harmonized CPTAC3 bddb5f33-0a4a-4ab1-840a-cf66b2557347 d34dc407f5effc848a5cc0b737fb8e96 {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.chimeric.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.chimeric.gdc_realn.bam 82222662 BAM chimeric harmonized CPTAC3 0f2a2b08-3b48-4e29-9096-b04f483c300a b9437effb07e4cc5dad1fca4f9850333 {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.chimeric.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.chimeric.gdc_realn.bam 126819549 BAM chimeric harmonized CPTAC3 5676ac33-f631-499c-a37b-b972564d3fd4 5000fd48ecde2a5586e9dee87fe1300a {"aliquot_tag": "ALQ_77d494a9", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.genomic.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.genomic.gdc_realn.bam 8821705910 BAM genomic harmonized CPTAC3 a02e0ad4-e419-404c-9477-b12e010c0d72 3edd94ebeb2131935e2937233c1e8dcb {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.genomic.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.genomic.gdc_realn.bam 8725691156 BAM genomic harmonized CPTAC3 8bc72068-e01a-4356-873c-d293f6415ff0 03de162cb48a1864db8826f86640df1e {"aliquot_tag": "ALQ_77d494a9", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.S51_L005_R1.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R1_001.fastq.gz 4004645938 FASTQ S51_L005_R1 unaligned CPTAC3 1ce39b71-9979-4cf0-b1fa-f7dd78e1775c af626d5f0b246bfc10eb92d9ec01c8a6 {"aliquot_tag": "ALQ_22ecd2af", "sample": "S51", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.S51_L005_R2.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R2_001.fastq.gz 4345370178 FASTQ S51_L005_R2 unaligned CPTAC3 716fbb61-c173-4b1c-bfe6-dbb2253ac40b 5fa11ca36d1d28c3201275367ef4e950 {"aliquot_tag": "ALQ_22ecd2af", "sample": "S51", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.S81_R1.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R1_001.fastq.gz 7564564360 FASTQ S81_R1 unaligned CPTAC3 b62bcecf-4f5d-431b-9073-c56ab9b6080f dec9dddd2a8ad749452a17061bbdc3a9 {"aliquot_tag": "ALQ_77d494a9", "sample": "S81", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.S81_R2.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R2_001.fastq.gz 7767211640 FASTQ S81_R2 unaligned CPTAC3 3d5f76f2-a2e9-4083-8301-7f00e7f44f87 aa5780118f4ffd8ba7272af4d5636df9 {"aliquot_tag": "ALQ_77d494a9", "sample": "S81", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.transcriptome.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.transcriptome.gdc_realn.bam 9853048360 BAM transcriptome harmonized CPTAC3 fe2c7846-b307-4833-b025-f8b63e25df9d 6e1e5a47020d484ceb34bcce2323e3a8 {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor"} -C3N-01843.RNA-Seq.transcriptome.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.transcriptome.gdc_realn.bam 7581847748 BAM transcriptome harmonized CPTAC3 a5845248-13f0-442e-b0ff-b3e1728e3bae 6c4637f2e305db2f5a7e59b9ba2ed320 {"aliquot_tag": "ALQ_77d494a9", "gdc_sample_type": "Primary Tumor"} -C3N-01843.WGS.N C3N-01843 UCEC WGS blood_normal CPT0098310002 CPT0098310002.WholeGenome.RP-1303.bam 56754312204 BAM aligned CPTAC3 03e8d6eb-573b-4ce2-8ce3-1710bff4d929 c70e2188a47b8a7a170974c7aa2e8232 {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01843.WGS.N.hg38 C3N-01843 UCEC WGS blood_normal CPT0098310002 2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wgs_gdc_realn.bam 83161577173 BAM harmonized CPTAC3 d8bcb6d3-7c4a-4dfe-94f9-6168784a2226 445dba940d5c6348b9ff1cdbb346541d {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01843.WGS.T C3N-01843 UCEC WGS tumor CPT0098270009 CPT0098270009.WholeGenome.RP-1303.bam 59310205505 BAM aligned CPTAC3 79588eda-f3a6-4501-8f3c-da6eb96b5393 63ddba6ff19761423ef74f77baff51c0 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor"} -C3N-01843.WGS.T.hg38 C3N-01843 UCEC WGS tumor CPT0098270009 982621a1-4bca-4b1e-ae32-15d4b9b860b6_wgs_gdc_realn.bam 87049722141 BAM harmonized CPTAC3 37e8a8b0-1193-45aa-88ff-50ae76858075 65ec6cb30829d99ada47c60315906ea6 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor"} -C3N-01843.WXS.N C3N-01843 UCEC WXS blood_normal CPT0098310002 CPT0098310002.WholeExome.RP-1303.bam 30158883116 BAM aligned CPTAC3 33510944-42d2-4859-a4f7-f580a3719eb9 82bc86a3a30c6749a510899ad1b1b697 {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01843.WXS.N.hg38 C3N-01843 UCEC WXS blood_normal CPT0098310002 2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wxs_gdc_realn.bam 41588850052 BAM harmonized CPTAC3 2c0022ef-c48f-48b0-9409-74cee5cd7fc1 51b55f1c6c36f5acfa6ee238fe700fb8 {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-01843.WXS.T C3N-01843 UCEC WXS tumor CPT0098270009 CPT0098270009.WholeExome.RP-1303.bam 44806548748 BAM aligned CPTAC3 05532c1f-78aa-4bd4-81ba-7a970f7b4cc9 8f00868e261f02239d4df322e717397b {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor"} -C3N-01843.WXS.T.hg38 C3N-01843 UCEC WXS tumor CPT0098270009 982621a1-4bca-4b1e-ae32-15d4b9b860b6_wxs_gdc_realn.bam 62083337377 BAM harmonized CPTAC3 3519a923-e879-45d2-bfc1-1d76f173d915 f97dbae7e240e87b1d1f797cf685b555 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor"} -C3N-01846.MethArray.Green.A C3N-01846 LSCC Methylation_Array tissue_normal CPT0098800009 203219650004_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6ec2cd5d-4f83-4ec5-b400-2f0b0a3d89bb a03387dca8937bf2ccae8bf84c73ebb7 {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.MethArray.Green.T C3N-01846 LSCC Methylation_Array tumor CPT0098770009 202234370091_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ae46c687-b113-4f55-ae20-3120bba5f75b b041ea28087bda0cb3c9c34410ef324a {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01846.MethArray.Red.A C3N-01846 LSCC Methylation_Array tissue_normal CPT0098800009 203219650004_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 586a946c-697a-4760-992a-ba355e2771f7 1d7523ec2e6195015757b14cf96272ef {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.MethArray.Red.T C3N-01846 LSCC Methylation_Array tumor CPT0098770009 202234370091_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 1ca43aaa-a00b-4259-9bc7-41ad3972e62f c214b2231a938c4d580f18d25316f924 {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01846.miRNA-Seq.A.hg38 C3N-01846 LSCC miRNA-Seq tissue_normal CPT0098800006 8e9dffa0-f7b1-4803-a585-013c5b88ceb5_mirnaseq_gdc_realn.bam 313377717 BAM harmonized CPTAC3 d5ec8b20-a7d3-4ac8-ba53-45de25e01caa ce954124ee18eab25de4f174370f18a7 {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.miRNA-Seq.S30_L006_R1.A C3N-01846 LSCC miRNA-Seq tissue_normal CPT0098800006 181113_UNC31-K00269_0164_AH23NNBBXY_GCCAAT_S30_L006_R1_001.unaln.bam 284961330 BAM S30_L006_R1 unaligned CPTAC3 3cba235b-725f-4dd9-8c8a-22cf413f08a9 c841c14b057bc64f9d8b9c4932710c04 {"aliquot_tag": "ALQ_31572dd9", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.miRNA-Seq.S33_L003_R1.T C3N-01846 LSCC miRNA-Seq tumor CPT0098770013 181119_UNC31-K00269_0165_AH27WCBBXY_GATCAG_S33_L003_R1_001.unaln.bam 169947801 BAM S33_L003_R1 unaligned CPTAC3 18792a0d-15d6-44b3-9b70-cb5bd4865b8f f861839536e266c99eae9ee2338d7fc0 {"aliquot_tag": "ALQ_1b5086d2", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01846.miRNA-Seq.T.hg38 C3N-01846 LSCC miRNA-Seq tumor CPT0098770013 14427dc4-48e7-4522-a9d5-8af6b1acac0e_mirnaseq_gdc_realn.bam 187969268 BAM harmonized CPTAC3 e7507908-334a-4b6b-8905-3274377915eb 54cfb95615d6bbf041c462ba34d947c3 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor"} -C3N-01846.RNA-Seq.chimeric.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.chimeric.gdc_realn.bam 43839177 BAM chimeric harmonized CPTAC3 5a08ce0c-e758-42f8-9018-38424f5e426b 30e7c88ca75287061a75847c27e26eb1 {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.RNA-Seq.chimeric.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.chimeric.gdc_realn.bam 68603546 BAM chimeric harmonized CPTAC3 bae7ab81-130c-4b9e-aecf-58825c943aec 7d12a3d6d71f1f3a057f6b47a3fde689 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor"} -C3N-01846.RNA-Seq.genomic.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.genomic.gdc_realn.bam 9086285710 BAM genomic harmonized CPTAC3 27690de8-9619-41fb-ae26-fc6701bf526a 973f8c02e694d16df6776ed12d7aee3c {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.RNA-Seq.genomic.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.genomic.gdc_realn.bam 9616875520 BAM genomic harmonized CPTAC3 d71ced21-7289-4890-b85c-c028a07bf3e5 b2b54d8b201aa3e5c1f27a152106d4f9 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor"} -C3N-01846.RNA-Seq.S22_L006_R1.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4074686817 FASTQ S22_L006_R1 unaligned CPTAC3 8fdec590-e14f-43d1-b9b0-09521ef2894f e78ceaa7c842df94cd125c940d536913 {"aliquot_tag": "ALQ_31572dd9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.RNA-Seq.S22_L006_R2.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4536665085 FASTQ S22_L006_R2 unaligned CPTAC3 a4a4a7fd-115a-4337-9000-0ab0ffd38450 8fea59d616a2f9f1845967b223ffa18c {"aliquot_tag": "ALQ_31572dd9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.RNA-Seq.S5_L008_R1.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R1_001.fastq.gz 4008737637 FASTQ S5_L008_R1 unaligned CPTAC3 318bc3c8-3804-423c-ac02-32b16694ac35 b7d50237eadbbdb87787a5bb73ce483a {"aliquot_tag": "ALQ_1b5086d2", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01846.RNA-Seq.S5_L008_R2.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R2_001.fastq.gz 4518105699 FASTQ S5_L008_R2 unaligned CPTAC3 4adcca16-1732-4c17-8c4b-6fa33752717a 6861ed014d7346b793996e43cf4e753e {"aliquot_tag": "ALQ_1b5086d2", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01846.RNA-Seq.transcriptome.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.transcriptome.gdc_realn.bam 11863347066 BAM transcriptome harmonized CPTAC3 112dd47e-0661-486e-ba78-7ead9aa6c697 4b909f9fced5f3906682a54c2cc44af4 {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.RNA-Seq.transcriptome.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.transcriptome.gdc_realn.bam 10644613853 BAM transcriptome harmonized CPTAC3 02feb8b4-3165-4caf-8da6-41b844f57d2c e3721d4672b725c1019c3a79f1478ab0 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor"} -C3N-01846.WGS.A C3N-01846 LSCC WGS tissue_normal CPT0098800009 CPT0098800009.WholeGenome.RP-1303.bam 59755756712 BAM aligned CPTAC3 95660a75-06a6-44c7-8ba0-a0d1adea2241 29807cf2d51f641eaeb4e2f746402d18 {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.WGS.A.hg38 C3N-01846 LSCC WGS tissue_normal CPT0098800009 2cb0e8ec-b8a9-4f65-aeb8-3a98d8889f53_wgs_gdc_realn.bam 85458051221 BAM harmonized CPTAC3 072edec1-52d2-43f1-bdc0-7cb854c6281b a519e297ffa6e9f652cd78e27d8156a3 {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.WGS.N C3N-01846 LSCC WGS blood_normal CPT0098810002 CPT0098810002.WholeGenome.RP-1303.bam 61021703039 BAM aligned CPTAC3 d699cfd0-ded2-4fd2-a22f-8bf429fb9295 cca2292f51f6442bca25098a9d3ef3c2 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal"} -C3N-01846.WGS.N.hg38 C3N-01846 LSCC WGS blood_normal CPT0098810002 b47a302c-4e31-4c79-85e3-ead148c0237b_wgs_gdc_realn.bam 90343628884 BAM harmonized CPTAC3 67b1acc9-4e47-4745-8e98-4261b6c3669a a78b391d376fd87ccae5377a3c15d9e8 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal"} -C3N-01846.WGS.T C3N-01846 LSCC WGS tumor CPT0098770009 CPT0098770009.WholeGenome.RP-1303.bam 62991609520 BAM aligned CPTAC3 c7c2fcf2-ef09-4225-a52e-710991fe6266 41dfeeb3002ce175755e88a9520e08ce {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01846.WGS.T.hg38 C3N-01846 LSCC WGS tumor CPT0098770009 e7aeabbd-a8b9-4804-a19d-a02b58cb27d7_wgs_gdc_realn.bam 92216746319 BAM harmonized CPTAC3 2fa98c49-1ae1-4f50-9e86-e83d1a87e80e ff637587b7f4b1e801137dbe40759257 {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01846.WXS.A C3N-01846 LSCC WXS tissue_normal CPT0098800009 CPT0098800009.WholeExome.RP-1303.bam 26666724663 BAM aligned CPTAC3 942e12ff-326a-4007-90cd-39181fea1972 6a9e84b0889d6011ec7be55cf8ddef8c {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.WXS.A.hg38 C3N-01846 LSCC WXS tissue_normal CPT0098800009 2cb0e8ec-b8a9-4f65-aeb8-3a98d8889f53_wxs_gdc_realn.bam 35525792099 BAM harmonized CPTAC3 a4b8536d-66e4-4716-803e-0c22ddee814a 0406ae841dc6dad0e15a2ece2131fc9b {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01846.WXS.N C3N-01846 LSCC WXS blood_normal CPT0098810002 CPT0098810002.WholeExome.RP-1303.bam 28397486507 BAM aligned CPTAC3 e2dc34ac-fd2b-4db4-bc8f-c240c018078b 7e6d3d3a50d077a2e31a7fc740c1eda0 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal"} -C3N-01846.WXS.N.hg38 C3N-01846 LSCC WXS blood_normal CPT0098810002 b47a302c-4e31-4c79-85e3-ead148c0237b_wxs_gdc_realn.bam 38428641055 BAM harmonized CPTAC3 6fd023ee-ac38-43b3-a65a-8b56f0a445ac 0ebe6a1c8119500b3a794c1ebc743010 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal"} -C3N-01846.WXS.T C3N-01846 LSCC WXS tumor CPT0098770009 CPT0098770009.WholeExome.RP-1303.bam 29410240347 BAM aligned CPTAC3 ef4127d1-7cd7-4d34-819f-4c6e415a79d6 dc2f3a23e26d40777952171c790f57ae {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01846.WXS.T.hg38 C3N-01846 LSCC WXS tumor CPT0098770009 e7aeabbd-a8b9-4804-a19d-a02b58cb27d7_wxs_gdc_realn.bam 40252560339 BAM harmonized CPTAC3 079acb9d-120b-4d1a-a112-711f74112aee 9cee4fb5f522e0c649010fdf9545edb7 {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor"} -C3N-01847.MethArray.Green.T C3N-01847 UCEC Methylation_Array tumor CPT0098920009 202234360009_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6dfc9a37-4cb6-4850-a076-0c6cc727c00d 36083134dd6f2758cf9096f355dd1668 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor"} -C3N-01847.MethArray.Red.T C3N-01847 UCEC Methylation_Array tumor CPT0098920009 202234360009_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 abb0167a-cb01-4431-a546-b7726ab4b091 3c11554ca842bf89aa0c12b211cd497c {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor"} -C3N-01847.miRNA-Seq.A.hg38 C3N-01847 UCEC miRNA-Seq tissue_normal CPT0098940009 5ab2614e-af51-4b67-9994-5afb8d1709fa_mirnaseq_gdc_realn.bam 300991421 BAM harmonized CPTAC3 cc66c502-d44a-4f13-b6be-5a5436d08862 f400b959ff5827f55176dbcc50b0dc2f {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.miRNA-Seq.S15_L005_R1.A C3N-01847 UCEC miRNA-Seq tissue_normal CPT0098940009 181113_UNC31-K00269_0164_AH23NNBBXY_CTATAC_S15_L005_R1_001.unaln.bam 264590327 BAM S15_L005_R1 unaligned CPTAC3 1f361857-5767-4e3e-802e-5336d0cbca8b 41c6fb3c3c39451454debe16986e870a {"aliquot_tag": "ALQ_9f34452d", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.miRNA-Seq.S31_L007_R1.T C3N-01847 UCEC miRNA-Seq tumor CPT0098920006 181108_UNC31-K00269_0163_BH23TVBBXY_CACGAT_S31_L007_R1_001.unaln.bam 231443881 BAM S31_L007_R1 unaligned CPTAC3 0eca0d17-4a9b-4822-95a3-3e5231f23fb8 832a971dfee511e5cf39958a7c71b0f4 {"aliquot_tag": "ALQ_80cbad1c", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01847.miRNA-Seq.T.hg38 C3N-01847 UCEC miRNA-Seq tumor CPT0098920006 a5f76433-232d-4e63-bfb9-02faf4540d8a_mirnaseq_gdc_realn.bam 250661357 BAM harmonized CPTAC3 063470e9-14a9-4e74-b2ce-54c21ffc1af2 e5d226967cef3b1fec560373a8c1fc9e {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.chimeric.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.chimeric.gdc_realn.bam 29372314 BAM chimeric harmonized CPTAC3 8bab7736-2aac-4a4b-ad5b-76ff48304c84 895a73c42b35ded3e1a27c7800f43f65 {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.RNA-Seq.chimeric.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.chimeric.gdc_realn.bam 84266212 BAM chimeric harmonized CPTAC3 b7293e50-8a59-4bd0-8a5b-a4035e50d4b6 79b2f485754713e1ff23579617f5a290 {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.chimeric.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.chimeric.gdc_realn.bam 195986840 BAM chimeric harmonized CPTAC3 26deefa1-4611-42a1-b514-398db9b2fc3c 10af977ee7298a0ad561be437ac5896d {"aliquot_tag": "ALQ_9fd762c3", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.genomic.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.genomic.gdc_realn.bam 8298532370 BAM genomic harmonized CPTAC3 f30f0e9f-1bb0-444d-a94a-d40ab5d34236 a3ad898ac6d0446f555c08231d463590 {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.RNA-Seq.genomic.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.genomic.gdc_realn.bam 9508565931 BAM genomic harmonized CPTAC3 a052819b-3fb2-44ac-88ba-18a8ee3cba54 e648ab02ceab89c62b3e448abc1a357d {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.genomic.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.genomic.gdc_realn.bam 10136624469 BAM genomic harmonized CPTAC3 05016140-73e9-4404-b193-70382df50125 2747482d0701f7b4bcaf57975e7d27b4 {"aliquot_tag": "ALQ_9fd762c3", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.S20_L006_R1.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3598866202 FASTQ S20_L006_R1 unaligned CPTAC3 30bd8b82-d377-4e4a-8233-87dc305f5dcb 231c31dd929682b3e7266b883aa45d59 {"aliquot_tag": "ALQ_9f34452d", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.RNA-Seq.S20_L006_R2.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3946689885 FASTQ S20_L006_R2 unaligned CPTAC3 20343e6a-3fde-41dc-abc2-96a59ce7e5bc a62e7d24d253a885a453419e1ca969b7 {"aliquot_tag": "ALQ_9f34452d", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.RNA-Seq.S34_R1.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R1_001.fastq.gz 6376631553 FASTQ S34_R1 unaligned CPTAC3 d326a3be-cccf-4fc6-9e9d-2e98d98926d3 fc40f428b3fb6f559ca6bf2380d0395c {"aliquot_tag": "ALQ_9fd762c3", "sample": "S34", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.S34_R2.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R2_001.fastq.gz 6746868562 FASTQ S34_R2 unaligned CPTAC3 ea94136e-7d44-4384-b8ce-2ae1680cc755 beeb439205f533f865d5ce17adc40d81 {"aliquot_tag": "ALQ_9fd762c3", "sample": "S34", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.S52_L005_R1.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R1_001.fastq.gz 4405831647 FASTQ S52_L005_R1 unaligned CPTAC3 7a769205-8931-4eb0-b6d1-344016aa5232 5ac1d106ddc83442a698a1a7cf85d6fc {"aliquot_tag": "ALQ_80cbad1c", "sample": "S52", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.S52_L005_R2.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R2_001.fastq.gz 4821043094 FASTQ S52_L005_R2 unaligned CPTAC3 cd0e6b1b-d41d-4719-ba6d-c16966ede8a1 f7eddcc1cb93a845ee0b16aa77ddb158 {"aliquot_tag": "ALQ_80cbad1c", "sample": "S52", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.transcriptome.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.transcriptome.gdc_realn.bam 10592431029 BAM transcriptome harmonized CPTAC3 85b08a49-c7dd-4172-8530-7c08c769baba ab24aea7e996c0467e0d8776aec878d8 {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.RNA-Seq.transcriptome.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.transcriptome.gdc_realn.bam 11577500423 BAM transcriptome harmonized CPTAC3 62b13918-7838-4d4b-b596-9f0f06673fb2 beaad0c8fcd5e78f95b35d0785ce4f1b {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor"} -C3N-01847.RNA-Seq.transcriptome.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.transcriptome.gdc_realn.bam 7630435401 BAM transcriptome harmonized CPTAC3 66bcd82c-952c-467b-823d-f2ca453a7d01 e0dccf48bf0106efded93471b298da5e {"aliquot_tag": "ALQ_9fd762c3", "gdc_sample_type": "Primary Tumor"} -C3N-01847.WGS.A C3N-01847 UCEC WGS tissue_normal CPT0098940006 CPT0098940006.WholeGenome.RP-1303.bam 58642172395 BAM aligned CPTAC3 159dbb83-fc57-4b14-bf4f-90a9ce88a373 9af7aaa81e3633406d3a69606e9f5590 {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.WGS.A.hg38 C3N-01847 UCEC WGS tissue_normal CPT0098940006 21d913ee-e1c1-4e89-876f-f026cd2e654c_wgs_gdc_realn.bam 87007708907 BAM harmonized CPTAC3 462f2069-63fc-427f-9ad3-3e7d55788cab d130e85577671e053854ace5c9fea549 {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.WGS.N C3N-01847 UCEC WGS blood_normal CPT0098950002 CPT0098950002.WholeGenome.RP-1303.bam 62529667972 BAM aligned CPTAC3 4ede2cd7-f1d7-43bf-affd-dcc871bbff4a 49db6eb273c654566020ec66fe743b97 {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal"} -C3N-01847.WGS.N.hg38 C3N-01847 UCEC WGS blood_normal CPT0098950002 5c5485ff-3bbe-49a3-ba3b-ea90a3c1ebd4_wgs_gdc_realn.bam 93404678397 BAM harmonized CPTAC3 034ec33a-1523-479b-b3af-517c1213296d 5979ff9681e6298dcb8d24de9a9cd3c5 {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal"} -C3N-01847.WGS.T C3N-01847 UCEC WGS tumor CPT0098920009 CPT0098920009.WholeGenome.RP-1303.bam 62247914283 BAM aligned CPTAC3 4727ee62-3e5e-4dc6-85d1-2efdb5bdfe89 12115750edd40a15a8254ffeb3051d34 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor"} -C3N-01847.WGS.T.hg38 C3N-01847 UCEC WGS tumor CPT0098920009 566e5e85-e970-4eb4-b258-9bcabb27379f_wgs_gdc_realn.bam 91105251479 BAM harmonized CPTAC3 f481e848-c0cc-4544-84c8-b9a59196108c 9ce300bb7c3b566fc3248c4d6eaed292 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor"} -C3N-01847.WXS.A C3N-01847 UCEC WXS tissue_normal CPT0098940006 CPT0098940006.WholeExome.RP-1303.bam 28047481361 BAM aligned CPTAC3 e36dd4b3-e04d-4928-8af0-f79a5161e44f f85d5107152873c40c9b2254ae368b16 {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.WXS.A.hg38 C3N-01847 UCEC WXS tissue_normal CPT0098940006 21d913ee-e1c1-4e89-876f-f026cd2e654c_wxs_gdc_realn.bam 38032151857 BAM harmonized CPTAC3 cc618664-fdbc-4ced-9859-cf7d5dddd84e 44f3bc3544ebfc11c3ebf21096642b2a {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01847.WXS.N C3N-01847 UCEC WXS blood_normal CPT0098950002 CPT0098950002.WholeExome.RP-1303.bam 65658213770 BAM aligned CPTAC3 116a9935-e66f-4871-a14a-440516e24c3b 1a678017acacb7e051f846c688efeff0 {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal"} -C3N-01847.WXS.N.hg38 C3N-01847 UCEC WXS blood_normal CPT0098950002 5c5485ff-3bbe-49a3-ba3b-ea90a3c1ebd4_wxs_gdc_realn.bam 90102900189 BAM harmonized CPTAC3 d4e9b2bd-78b7-4199-aff3-3ae6c731351f ce752495b62e3f62a36fa114fd924ddc {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal"} -C3N-01847.WXS.T C3N-01847 UCEC WXS tumor CPT0098920009 CPT0098920009.WholeExome.RP-1303.bam 41443172602 BAM aligned CPTAC3 d218fd8d-8040-4678-a23b-5fd6f4e2984f 2060f5653ee927819a46980d50f1924c {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor"} -C3N-01847.WXS.T.hg38 C3N-01847 UCEC WXS tumor CPT0098920009 566e5e85-e970-4eb4-b258-9bcabb27379f_wxs_gdc_realn.bam 56912198975 BAM harmonized CPTAC3 f13b1586-244c-45d8-b0f3-766cad53ba09 947218eefa8ea04e80a83fcd9834c0d3 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor"} -C3N-01848.MethArray.Green.T C3N-01848 UCEC Methylation_Array tumor CPT0099050009 202234360028_R08C01_Grn.idat 13676227 IDAT Green NA CPTAC3 b9173811-7d6f-4bda-902c-841bf2fa1365 5e248dc4ad61c9a0f5e2ebb6efa09cc8 {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.MethArray.Red.T C3N-01848 UCEC Methylation_Array tumor CPT0099050009 202234360028_R08C01_Red.idat 13676227 IDAT Red NA CPTAC3 6c369da8-db3a-4e16-b1e3-83930d57b2b6 5c4ceeb10677e4789161970ae285e0ad {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.miRNA-Seq.A.hg38 C3N-01848 UCEC miRNA-Seq tissue_normal CPT0099080009 59c781f9-d87f-4daf-bb72-fdc2d82090a5_mirnaseq_gdc_realn.bam 337481800 BAM harmonized CPTAC3 34c6bf01-3489-49fb-a73a-f5b7d1e959ef 277cd65915e3a614204f2f74e1c437af {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.miRNA-Seq.S17_L005_R1.A C3N-01848 UCEC miRNA-Seq tissue_normal CPT0099080009 181113_UNC31-K00269_0164_AH23NNBBXY_GACGAC_S17_L005_R1_001.unaln.bam 288768694 BAM S17_L005_R1 unaligned CPTAC3 b45a3e03-b792-49d0-b44b-8f3f86bdc6ee 05a6eede9aa9d23bbe0fe2c3a68d1792 {"aliquot_tag": "ALQ_dbbcf250", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.miRNA-Seq.S32_L007_R1.T C3N-01848 UCEC miRNA-Seq tumor CPT0099050006 181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L007_R1_001.unaln.bam 208984650 BAM S32_L007_R1 unaligned CPTAC3 fc3f3c0c-2417-4354-b3d6-3729795430cd 557747477865332276afd956726475e6 {"aliquot_tag": "ALQ_b3932b70", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.miRNA-Seq.T.hg38 C3N-01848 UCEC miRNA-Seq tumor CPT0099050006 ebc770aa-86dd-4745-9ec9-bc56d39ddd58_mirnaseq_gdc_realn.bam 231356726 BAM harmonized CPTAC3 7670c4b1-ca54-4e4b-8825-5889668d3f54 8759ec759bb628641a4b4fd787751bb9 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.chimeric.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.chimeric.gdc_realn.bam 41229277 BAM chimeric harmonized CPTAC3 8ecef444-9379-4906-8c27-0c2857342859 c2f2ea463915c1c6f60e60e5cd7a18e6 {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.RNA-Seq.chimeric.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.chimeric.gdc_realn.bam 59975893 BAM chimeric harmonized CPTAC3 5935e8a2-43ba-4823-9895-697acde4d594 f10f35156de84952c475788e8065c9e1 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.chimeric.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.chimeric.gdc_realn.bam 53306657 BAM chimeric harmonized CPTAC3 5e2d2680-2159-4511-9cf6-1be27b2d8914 accfafd9052173abad6127159720a812 {"aliquot_tag": "ALQ_e6ab6d76", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.genomic.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.genomic.gdc_realn.bam 9926451360 BAM genomic harmonized CPTAC3 7d8019b3-0b0f-47e7-8e7c-8ecd98dc9869 cb0a2ab78ac3fdcd81336013ea2ae5b7 {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.RNA-Seq.genomic.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.genomic.gdc_realn.bam 7893778255 BAM genomic harmonized CPTAC3 30bfb7ff-39c1-41c8-9e39-1158d7254d67 0abc29edf5318b128b133a1213114df6 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.genomic.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.genomic.gdc_realn.bam 8141324920 BAM genomic harmonized CPTAC3 7776390c-6669-4360-aefd-44e9b215ce9b 9af777fa5d50b16061c602ee042ba896 {"aliquot_tag": "ALQ_e6ab6d76", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.S18_L005_R1.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3998734194 FASTQ S18_L005_R1 unaligned CPTAC3 32347445-ca9b-48d5-86ed-8aa62be55b12 3ec46915a4a8aaf1a1006582e141321c {"aliquot_tag": "ALQ_dbbcf250", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.RNA-Seq.S18_L005_R2.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4446514471 FASTQ S18_L005_R2 unaligned CPTAC3 11bdc837-b506-432e-806c-a1010aa468b4 420e3cd2ed4a8ca6c65093e5232606a0 {"aliquot_tag": "ALQ_dbbcf250", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.RNA-Seq.S42_R1.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R1_001.fastq.gz 3988583172 FASTQ S42_R1 unaligned CPTAC3 076bc912-4a82-4cec-a4d1-c51023192c14 e5384cbfc0cdd4ec738f27d6dafe4789 {"aliquot_tag": "ALQ_e6ab6d76", "sample": "S42", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.S42_R2.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R2_001.fastq.gz 4477653222 FASTQ S42_R2 unaligned CPTAC3 243c6178-fed8-4792-b4b6-b93d8d69e2bd f8a1782e50acbda4cb2712798b2c88db {"aliquot_tag": "ALQ_e6ab6d76", "sample": "S42", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.S53_L005_R1.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R1_001.fastq.gz 3597399012 FASTQ S53_L005_R1 unaligned CPTAC3 f9319d30-0a6a-4087-b77f-af799efb67b0 4f08cdecf74f9b9ff5deb9b5929d13cd {"aliquot_tag": "ALQ_b3932b70", "sample": "S53", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.S53_L005_R2.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R2_001.fastq.gz 3947068221 FASTQ S53_L005_R2 unaligned CPTAC3 e63698ba-9f3a-4353-ac11-a4a669d86cc2 ce6d6dd29e011ebb2c07ab234f071fbc {"aliquot_tag": "ALQ_b3932b70", "sample": "S53", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.transcriptome.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.transcriptome.gdc_realn.bam 11870911906 BAM transcriptome harmonized CPTAC3 9027bf17-fb27-4060-9a3c-f2cb10749319 cf482aa12b7084815e47bff704b31157 {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.RNA-Seq.transcriptome.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.transcriptome.gdc_realn.bam 9094382622 BAM transcriptome harmonized CPTAC3 04911655-a333-412c-9aa3-c0903a592251 1a4d845b58d60a6a6fb4fbe851bf1297 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor"} -C3N-01848.RNA-Seq.transcriptome.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.transcriptome.gdc_realn.bam 7246552828 BAM transcriptome harmonized CPTAC3 68a772f5-2cca-4d37-bb6f-a3c6f1fad2e4 03e104ba1a26ea8476af20f31589604c {"aliquot_tag": "ALQ_e6ab6d76", "gdc_sample_type": "Primary Tumor"} -C3N-01848.WGS.A C3N-01848 UCEC WGS tissue_normal CPT0099080006 CPT0099080006.WholeGenome.RP-1303.bam 57074268629 BAM aligned CPTAC3 eec33459-1fcc-4a31-b746-24d65d8237ea 0f0e599561c765909bbe0fbc54f9a4c4 {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.WGS.A.hg38 C3N-01848 UCEC WGS tissue_normal CPT0099080006 428a6d25-6316-4e72-88b3-4f8e6203de8a_wgs_gdc_realn.bam 82687312539 BAM harmonized CPTAC3 698d94c2-fdd2-4fd6-abd8-6b0fdde43d0d fc8de03efd1c768ee76cf83198cb260f {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.WGS.N C3N-01848 UCEC WGS blood_normal CPT0099090002 CPT0099090002.WholeGenome.RP-1303.bam 50887403993 BAM aligned CPTAC3 4d8bec4e-53ed-4747-8e7f-ba41a253de41 1025489fba0d8c4d8772cd588dbe6212 {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal"} -C3N-01848.WGS.N.hg38 C3N-01848 UCEC WGS blood_normal CPT0099090002 edcd95ca-3e65-452b-9345-de6305e24ad7_wgs_gdc_realn.bam 76159274979 BAM harmonized CPTAC3 2e445f93-e8af-4308-9ca7-750f9ff80d2b a838cf0a8fa23b5525d7621970462771 {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal"} -C3N-01848.WGS.T C3N-01848 UCEC WGS tumor CPT0099050009 CPT0099050009.WholeGenome.RP-1303.bam 68688925278 BAM aligned CPTAC3 bf8ed2f6-720e-45bc-aa92-4850be3e8e52 0cdf5d287ddcf14635b06aeaa9cf3d8d {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.WGS.T.hg38 C3N-01848 UCEC WGS tumor CPT0099050009 b2c00315-f249-4e89-8999-fffde64e2f8f_wgs_gdc_realn.bam 101078962653 BAM harmonized CPTAC3 8f804e44-65d6-4418-b946-67b471a69ebc 70c1506f9af40c7b935d0371f73239ad {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.WXS.A C3N-01848 UCEC WXS tissue_normal CPT0099080006 CPT0099080006.WholeExome.RP-1303.bam 31889663666 BAM aligned CPTAC3 70cec465-e9a7-4d8c-97ef-10c20b2296a1 a66406baac59bb0c3cc4f042effd5a17 {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.WXS.A.hg38 C3N-01848 UCEC WXS tissue_normal CPT0099080006 428a6d25-6316-4e72-88b3-4f8e6203de8a_wxs_gdc_realn.bam 43194765696 BAM harmonized CPTAC3 161ffa2b-9e33-4b66-aeff-18421fa95fa1 a82a26854a403325f0ea3489b1cd6200 {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01848.WXS.N C3N-01848 UCEC WXS blood_normal CPT0099090002 CPT0099090002.WholeExome.RP-1303.bam 57529289123 BAM aligned CPTAC3 149cf4d7-a966-4160-804e-59786da9f889 ffde313807faba5fb20877ccb6364a64 {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal"} -C3N-01848.WXS.N.hg38 C3N-01848 UCEC WXS blood_normal CPT0099090002 edcd95ca-3e65-452b-9345-de6305e24ad7_wxs_gdc_realn.bam 78453362329 BAM harmonized CPTAC3 13124b5f-01ee-4be8-8029-98fd79e0c4b3 615b4707a8c1973a052776878fdb137b {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal"} -C3N-01848.WXS.T C3N-01848 UCEC WXS tumor CPT0099050009 CPT0099050009.WholeExome.RP-1303.bam 34656128446 BAM aligned CPTAC3 def8f940-d394-496a-b02e-69462fb0f37d 50b8cab9b4c99e5f401b220a79c200ec {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor"} -C3N-01848.WXS.T.hg38 C3N-01848 UCEC WXS tumor CPT0099050009 b2c00315-f249-4e89-8999-fffde64e2f8f_wxs_gdc_realn.bam 47310254439 BAM harmonized CPTAC3 f27ee995-1030-41d3-b6e6-e2c0251bbd4a 40644f255d51e9bb2c6befb7fc9415ac {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor"} -C3N-01849.MethArray.Green.T C3N-01849 GBM Methylation_Array tumor CPT0224780006 204367490048_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7af526c7-8356-4326-bdbe-617c651f9641 8aac2ade361defa86852d283b4300f6d {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor"} -C3N-01849.MethArray.Red.T C3N-01849 GBM Methylation_Array tumor CPT0224780006 204367490048_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 c8bc6ee7-95dc-48a6-8d12-12283d8df444 b74a22bb7cd9c76b950dd3439a10f1a9 {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor"} -C3N-01849.miRNA-Seq.S41_L002_R1.T C3N-01849 GBM miRNA-Seq tumor CPT0224780009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 228567039 BAM S41_L002_R1 unaligned CPTAC3 3dbe979d-bd63-4379-9bf1-d5a114081b2e a3fc92c38e8b4f9cb4c8f89e694ba320 {"aliquot_tag": "ALQ_d4f297f8", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01849.miRNA-Seq.T.hg38 C3N-01849 GBM miRNA-Seq tumor CPT0224780009 16162ec0-7b2d-40a5-ac4a-bb5b5cb57f5e_mirnaseq_gdc_realn.bam 252060926 BAM harmonized CPTAC3 c25da38d-81d8-4793-839d-6109462fa3d5 0ff6eb823c23c990f5f9caf6e8e0b261 {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor"} -C3N-01849.RNA-Seq.chimeric.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.chimeric.gdc_realn.bam 38337433 BAM chimeric harmonized CPTAC3 822efd01-9f45-41f2-a9ab-9c2511127750 900f5f6386d7da981314a4f4bc069cbc {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor"} -C3N-01849.RNA-Seq.genomic.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.genomic.gdc_realn.bam 7511253933 BAM genomic harmonized CPTAC3 71bd0e47-7914-45c4-a405-d62c98fad960 608c8362bf5e55fc44440fae094a27f0 {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor"} -C3N-01849.RNA-Seq.S9_L003_R1.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R1_001.fastq.gz 3307839110 FASTQ S9_L003_R1 unaligned CPTAC3 583387e2-75e7-4f09-be36-486effc226fd 275f694446a8e500c4f148c69f7dd131 {"aliquot_tag": "ALQ_d4f297f8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01849.RNA-Seq.S9_L003_R2.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ S9_L003_R2 unaligned CPTAC3 83d649cc-79e9-457a-9e7f-e0fb46c94f8a 6b50106dd2476b2133b3a33b3f73b759 {"aliquot_tag": "ALQ_d4f297f8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01849.RNA-Seq.transcriptome.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.transcriptome.gdc_realn.bam 7944200702 BAM transcriptome harmonized CPTAC3 2a563866-7933-45a1-bb39-cf7b752b0d19 5d0d360fa5782d19e9d3bb7a81bec004 {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor"} -C3N-01849.WGS.N C3N-01849 GBM WGS blood_normal CPT0224830002 CPT0224830002.WholeGenome.RP-2158.bam 26026553207 BAM aligned CPTAC3 41abf016-07f9-4ad3-a5d6-861a86fc439c e6e9c9e206b70981c1e4eab89c64feca {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01849.WGS.N.hg38 C3N-01849 GBM WGS blood_normal CPT0224830002 bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wgs_gdc_realn.bam 78090125732 BAM harmonized CPTAC3 20c0f60b-3fab-4d2e-878b-23ad2d24d00a 1711ae80c896e021e0db28a9d227c358 {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01849.WGS.T C3N-01849 GBM WGS tumor CPT0224780006 CPT0224780006.WholeGenome.RP-2158.bam 22035764736 BAM aligned CPTAC3 6a6f9bda-1e93-4fa1-83d0-dd3e624844de ef78a03d4dc1f8fdc6a28202aa056d29 {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor"} -C3N-01849.WGS.T.hg38 C3N-01849 GBM WGS tumor CPT0224780006 049c6c50-80e2-46b6-bb4b-951301cf76f1_wgs_gdc_realn.bam 63623607195 BAM harmonized CPTAC3 1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73 b9be9d365b2a7088ac07d70bcbc3fadc {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor"} -C3N-01849.WXS.N C3N-01849 GBM WXS blood_normal CPT0224830002 CPT0224830002.WholeExome.RP-1303.bam 28026085376 BAM aligned CPTAC3 70d01c24-e736-408e-8ddf-61c55dc60de4 b7e2854beca2d2129172d4e84fcc29d9 {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01849.WXS.N.hg38 C3N-01849 GBM WXS blood_normal CPT0224830002 bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wxs_gdc_realn.bam 38515425322 BAM harmonized CPTAC3 f5f45a87-326b-47a8-b39c-0efb79094bd5 ffd271b0434cd968be4861f2c750fc62 {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal"} -C3N-01849.WXS.T C3N-01849 GBM WXS tumor CPT0224780006 CPT0224780006.WholeExome.RP-1303.bam 17373452560 BAM aligned CPTAC3 65c12110-2efa-44de-a6a1-8823328fd1b0 976ce588b28ff245609a66e8692bfc8a {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor"} -C3N-01849.WXS.T.hg38 C3N-01849 GBM WXS tumor CPT0224780006 049c6c50-80e2-46b6-bb4b-951301cf76f1_wxs_gdc_realn.bam 24379241229 BAM harmonized CPTAC3 947927ab-08a2-444d-8164-b50ceee502bc b30f635f3712212bee48f6ca700f2b64 {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor"} -C3N-01850.MethArray.Green.T C3N-01850 GBM Methylation_Array tumor CPT0125260005 203027390081_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 13b7da88-3aad-48fb-b058-342086b9a2bf 8ec9afc431d0fa8ed7cebdd83782debb {"aliquot_tag": "ALQ_ad43c370", "gdc_sample_type": "Primary Tumor"} -C3N-01850.MethArray.Red.T C3N-01850 GBM Methylation_Array tumor CPT0125260005 203027390081_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 febfe0c8-2b32-4228-8ce8-05d2d4704778 cc4f2b557fa42da23092c5964f32928f {"aliquot_tag": "ALQ_ad43c370", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_92abb7a.miRNA-Seq.S31_L006_R1.T C3N-01850 GBM miRNA-Seq tumor CPT0125270006 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L006_R1_001.unaln.bam 274271010 BAM S31_L006_R1 unaligned CPTAC3 7060cc1e-8e41-48df-9775-ef103ac0e04e 0445ebf409594b10167ac6e088e3090d {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S31", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_92abb7a.miRNA-Seq.T.hg38 C3N-01850 GBM miRNA-Seq tumor CPT0125270006 f80ec1e0-8672-4149-b200-3e7db59812d5_mirnaseq_gdc_realn.bam 308899234 BAM harmonized CPTAC3 cf67421d-0794-434e-85b7-0d91eab3c4a1 060d4347c64fee090e112a5b150927ca {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_92abb7a.RNA-Seq.chimeric.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.chimeric.gdc_realn.bam 40144139 BAM chimeric harmonized CPTAC3 6e19444c-d775-49d1-8516-d3b463cbdb0f fb8ac6f1ec5cbeae7922b38c22948f84 {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_92abb7a.RNA-Seq.genomic.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.genomic.gdc_realn.bam 8169138578 BAM genomic harmonized CPTAC3 c99bdcb0-df6b-4660-a6d3-43581f12e9f9 eea71896fa90a8ae13d80e1eda627b72 {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_92abb7a.RNA-Seq.S3_L001_R1.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R1_001.fastq.gz 3847474936 FASTQ S3_L001_R1 unaligned CPTAC3 5da572da-3bd7-4c0c-86c3-1e86cc3482af 905279269a1c951e46742584a99e0aca {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_92abb7a.RNA-Seq.S3_L001_R2.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R2_001.fastq.gz 4041617916 FASTQ S3_L001_R2 unaligned CPTAC3 c11d25ee-91e0-40d1-abfa-cd21ed2df98a 95efb9bbbfea0e6ccdda41d01c89b90b {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_92abb7a.RNA-Seq.transcriptome.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.transcriptome.gdc_realn.bam 9177665078 BAM transcriptome harmonized CPTAC3 571adea5-3548-4a9e-a846-a0c62b7b600e d8e9048fe1581af46165758cfa367000 {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_9995a6eb.MethArray.Green.T C3N-01850 GBM Methylation_Array tumor CPT0125270009 203219650047_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 986f4467-8c60-472b-b32c-afb23c642578 0f504f4dd24fbed25c9bd5b6c640cd02 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_9995a6eb.MethArray.Red.T C3N-01850 GBM Methylation_Array tumor CPT0125270009 203219650047_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 0acdbc29-be6b-4d09-a132-c64fb24fa5c8 fec8873d517068e0434bb6b7fef336d9 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_9995a6eb.WGS.T C3N-01850 GBM WGS tumor CPT0125270009 CPT0125270009.WholeGenome.RP-1303.bam 78628387429 BAM aligned CPTAC3 24677690-6d0b-4926-93c8-f52e49a4979f 0bb6a4b6b274ba90bf40d6b33842b176 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_9995a6eb.WGS.T.hg38 C3N-01850 GBM WGS tumor CPT0125270009 437c316c-0135-4d20-98eb-cb6b904b77a8_wgs_gdc_realn.bam 115208540661 BAM harmonized CPTAC3 bdfe3ba9-4bbb-4d85-8a69-d912cc4ffa85 860084bead6e461528c3d946e535e6db {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_9995a6eb.WXS.T C3N-01850 GBM WXS tumor CPT0125270009 CPT0125270009.WholeExome.RP-1303.bam 26533731398 BAM aligned CPTAC3 4839f427-dcdd-4d03-bbf7-0e288fa1b044 500426a84ec1576aa58c16daf3f45d03 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.REP_9995a6eb.WXS.T.hg38 C3N-01850 GBM WXS tumor CPT0125270009 437c316c-0135-4d20-98eb-cb6b904b77a8_wxs_gdc_realn.bam 35820951839 BAM harmonized CPTAC3 a01b4f54-6cdb-4d63-88cf-ac131ee31526 bc9bc38164fed18539a67b2a88af5015 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-01850.WGS.N C3N-01850 GBM WGS blood_normal CPT0125300002 CPT0125300002.WholeGenome.RP-1303.bam 63892207697 BAM aligned CPTAC3 d4f8975c-9c36-46cd-9e1e-f21bc6909364 0901d15d0f5649360ac919d026de787e {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01850.WGS.N.hg38 C3N-01850 GBM WGS blood_normal CPT0125300002 b0215200-5a5a-4ea7-89c6-09b058ab1ad4_wgs_gdc_realn.bam 94482934419 BAM harmonized CPTAC3 954ecba0-3516-4e98-b878-ca5f14147164 0237e8cdacdf33959d2a54a0bb6c8de0 {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01850.WXS.N C3N-01850 GBM WXS blood_normal CPT0125300002 CPT0125300002.WholeExome.RP-1303.bam 31632024625 BAM aligned CPTAC3 bb079077-ff91-42be-9a1d-26de9ae73076 b5d5e7051f88ed1e74fbaf03d73e6e9b {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01850.WXS.N.hg38 C3N-01850 GBM WXS blood_normal CPT0125300002 b0215200-5a5a-4ea7-89c6-09b058ab1ad4_wxs_gdc_realn.bam 43588861715 BAM harmonized CPTAC3 a6c2900b-9a85-4717-992c-1101d0a679f6 8fc4b9ca07f66bf99eb104f9a0edf797 {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01851.MethArray.Green.T C3N-01851 GBM Methylation_Array tumor CPT0186100006 203219670019_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cc68905a-51c7-4188-bda7-687ff3b2d47e 7e6067cfd1aa455ed7c410e16a50c74b {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor"} -C3N-01851.MethArray.Red.T C3N-01851 GBM Methylation_Array tumor CPT0186100006 203219670019_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 5d099454-d8d6-4d89-ae8a-dfc0ac84cf6b 4978328d6f0af15e9a4d53fe46f0bdc7 {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor"} -C3N-01851.miRNA-Seq.S9_L003_R1.T C3N-01851 GBM miRNA-Seq tumor CPT0186100009 181219_UNC31-K00269_0173_BHYGJJBBXX_GATCAG_S9_L003_R1_001.unaln.bam 259629345 BAM S9_L003_R1 unaligned CPTAC3 fe53c343-784d-4ded-979b-be7a6e11a043 dbc628bac05777e33d5265757ff00117 {"aliquot_tag": "ALQ_d090e00", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01851.miRNA-Seq.T.hg38 C3N-01851 GBM miRNA-Seq tumor CPT0186100009 6f16f09b-03f9-4fc7-aa21-5da23f9cac5a_mirnaseq_gdc_realn.bam 291718248 BAM harmonized CPTAC3 7d236dc1-54be-467f-853f-23929e9e4203 764d0b54c52bf76563b34d433cd98b86 {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor"} -C3N-01851.RNA-Seq.chimeric.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.chimeric.gdc_realn.bam 144568338 BAM chimeric harmonized CPTAC3 389cfe81-01ee-4bb1-8791-046f60653ed0 2f44f965470eeac13e5d0261783d37bf {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor"} -C3N-01851.RNA-Seq.genomic.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.genomic.gdc_realn.bam 8235849198 BAM genomic harmonized CPTAC3 175fe42d-f76f-401b-9bdd-1f54ef5c5c8d 8fae163adef27687aa368c48e7ac293a {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor"} -C3N-01851.RNA-Seq.S12_L003_R1.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3912185114 FASTQ S12_L003_R1 unaligned CPTAC3 01bc3d1b-90a8-4045-a317-33d29575b67a c71079aa987d4b8b7b8b55515313194f {"aliquot_tag": "ALQ_d090e00", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01851.RNA-Seq.S12_L003_R2.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4197953612 FASTQ S12_L003_R2 unaligned CPTAC3 1054b7d7-4b9b-4700-bdef-e069dab8c849 381ec2241e4c415030fccafa70fc5cd9 {"aliquot_tag": "ALQ_d090e00", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01851.RNA-Seq.transcriptome.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.transcriptome.gdc_realn.bam 10377982061 BAM transcriptome harmonized CPTAC3 ece7e613-8d57-4f4e-a545-b0b72c8129b0 b23041dc2da8db38631f6e9a312f46a0 {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor"} -C3N-01851.WGS.N C3N-01851 GBM WGS blood_normal CPT0186120002 CPT0186120002.WholeGenome.RP-1303.bam 54343423025 BAM aligned CPTAC3 35864da6-e266-404c-ae01-c2beb343f37b cf4d224831c8b7e57d8103fa51a3d4ce {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01851.WGS.N.hg38 C3N-01851 GBM WGS blood_normal CPT0186120002 ba85de62-a722-4f2a-a296-c62622195e86_wgs_gdc_realn.bam 77843271265 BAM harmonized CPTAC3 b9ed756a-1b5d-48a3-b82a-807f17803b39 07e4c13aee236cc3d006cc19fb9bfd3f {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01851.WGS.T C3N-01851 GBM WGS tumor CPT0186100006 CPT0186100006.WholeGenome.RP-1303.bam 62236814450 BAM aligned CPTAC3 0d6943f0-e372-4354-bbbd-e36e1350362d 96dcb5c0b5505de078217983bf37afb9 {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor"} -C3N-01851.WGS.T.hg38 C3N-01851 GBM WGS tumor CPT0186100006 e2e5dd96-5ce1-42d5-befd-7ba28a60290a_wgs_gdc_realn.bam 90367252302 BAM harmonized CPTAC3 6124609e-1a61-49f5-a5b9-32a56ca58fb0 20f5dbaa44992e93fcb4ff9f97a8d6f0 {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor"} -C3N-01851.WXS.N C3N-01851 GBM WXS blood_normal CPT0186120002 CPT0186120002.WholeExome.RP-1303.bam 28712672824 BAM aligned CPTAC3 04e7933d-8eb6-415a-913c-83d5a5b1df46 c23917998ee2d64e9051d56b93203351 {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01851.WXS.N.hg38 C3N-01851 GBM WXS blood_normal CPT0186120002 ba85de62-a722-4f2a-a296-c62622195e86_wxs_gdc_realn.bam 39890670249 BAM harmonized CPTAC3 9326193e-0254-4a7e-bbce-b07d8801aa7e e2dcbd94238d9d861e16ef59b24515b6 {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01851.WXS.T C3N-01851 GBM WXS tumor CPT0186100006 CPT0186100006.WholeExome.RP-1303.bam 26997067155 BAM aligned CPTAC3 50c6b722-2b7a-409c-beaa-b6bc286b601a b67f57a11d1b6b3d54564a41e5f8d3cd {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor"} -C3N-01851.WXS.T.hg38 C3N-01851 GBM WXS tumor CPT0186100006 e2e5dd96-5ce1-42d5-befd-7ba28a60290a_wxs_gdc_realn.bam 37570116770 BAM harmonized CPTAC3 818e8416-7156-4d77-bded-d089d5b5a015 e28f31753fdd5b842b8bc2d6a7115d8b {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor"} -C3N-01852.MethArray.Green.T C3N-01852 GBM Methylation_Array tumor CPT0182500006 203219650156_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bf3f946e-66e3-4d4c-95cc-957fab8b4ec0 d11e505ab7e70f44f40cfb1944f59b08 {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor"} -C3N-01852.MethArray.Red.T C3N-01852 GBM Methylation_Array tumor CPT0182500006 203219650156_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 6f8c99d9-5243-441f-9a1a-6abed2432125 8a6935b209f2fdb02df7f1bd2e6e05ee {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor"} -C3N-01852.miRNA-Seq.S4_L003_R1.T C3N-01852 GBM miRNA-Seq tumor CPT0182500009 181219_UNC31-K00269_0173_BHYGJJBBXX_TGACCA_S4_L003_R1_001.unaln.bam 222345231 BAM S4_L003_R1 unaligned CPTAC3 1b62bae3-f01a-46da-914e-c1fa59cd41ed 2608cd1d8dd4ec3749aa841b535d672b {"aliquot_tag": "ALQ_62d76805", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01852.miRNA-Seq.T.hg38 C3N-01852 GBM miRNA-Seq tumor CPT0182500009 da5714a0-9726-4a11-a99f-8e68d3b82749_mirnaseq_gdc_realn.bam 247750334 BAM harmonized CPTAC3 d3f3d950-1438-421f-921c-cc41c261eb79 3fa062348e1f055ae1ca47145aec4d1e {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor"} -C3N-01852.RNA-Seq.chimeric.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.chimeric.gdc_realn.bam 187643093 BAM chimeric harmonized CPTAC3 df3221e8-163b-40a3-923e-afd781d89c63 c012e02180c988ebf7cdb62a6ea33bff {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor"} -C3N-01852.RNA-Seq.genomic.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.genomic.gdc_realn.bam 8345369856 BAM genomic harmonized CPTAC3 dfa4742f-301e-4847-8eca-168219cca798 1901aee6f7d5ed260b4efdb458737995 {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor"} -C3N-01852.RNA-Seq.S4_L001_R1.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3857772720 FASTQ S4_L001_R1 unaligned CPTAC3 44954158-c233-4b38-ba9f-4478abefe2c8 dc2931ae49faf27c6496e247c81f36cd {"aliquot_tag": "ALQ_62d76805", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01852.RNA-Seq.S4_L001_R2.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4224237803 FASTQ S4_L001_R2 unaligned CPTAC3 0710afd1-8d04-4b2b-971a-00b1b4e266ac 1e455e020ce105ab5289c45bc9d88105 {"aliquot_tag": "ALQ_62d76805", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01852.RNA-Seq.transcriptome.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.transcriptome.gdc_realn.bam 9497050602 BAM transcriptome harmonized CPTAC3 d51bb637-c108-4dd9-af88-438d5ff2730a 461d4dafd80e3afa1efc0d8dbe4f9ccb {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor"} -C3N-01852.WGS.N C3N-01852 GBM WGS blood_normal CPT0182540002 CPT0182540002.WholeGenome.RP-1303.bam 61047247103 BAM aligned CPTAC3 d95d27b3-f55c-4d48-9e04-b0add1e2f3fb 26239697a474144efe44fd8c02349a8d {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01852.WGS.N.hg38 C3N-01852 GBM WGS blood_normal CPT0182540002 5df57bba-1178-47d7-b964-08219811cd0b_wgs_gdc_realn.bam 87951231995 BAM harmonized CPTAC3 98128dc9-e9f2-49a5-b9d9-a6ed16f2086a bf1effe3fd2466d14d1ef07ed8f1dfdd {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01852.WGS.T C3N-01852 GBM WGS tumor CPT0182500006 CPT0182500006.WholeGenome.RP-1303.bam 53989674487 BAM aligned CPTAC3 f92deb20-d6d3-48b5-859f-815ba80ebb8c 5cdbe611954b438017b95d26207c873a {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor"} -C3N-01852.WGS.T.hg38 C3N-01852 GBM WGS tumor CPT0182500006 5f1e8acb-e97d-4915-9600-cd47b084100e_wgs_gdc_realn.bam 78505161924 BAM harmonized CPTAC3 65b88411-df2b-44c8-9a4c-c97b465fdc7e f1606f50fe1b3c45f64e87ef380142c9 {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor"} -C3N-01852.WXS.N C3N-01852 GBM WXS blood_normal CPT0182540002 CPT0182540002.WholeExome.RP-1303.bam 24680940972 BAM aligned CPTAC3 6f497d13-aced-43ad-9dbb-b07e797c792f 665168da1fe52ceb095c483ed0bf3546 {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01852.WXS.N.hg38 C3N-01852 GBM WXS blood_normal CPT0182540002 5df57bba-1178-47d7-b964-08219811cd0b_wxs_gdc_realn.bam 34285363257 BAM harmonized CPTAC3 089209aa-c35f-4738-8a0b-87c5873224f5 369f12fd332e985b6b76d9ae4de56c2b {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01852.WXS.T C3N-01852 GBM WXS tumor CPT0182500006 CPT0182500006.WholeExome.RP-1303.bam 24064662190 BAM aligned CPTAC3 11ed4223-de0f-441a-88e7-b451e6b9eb94 adee2250bd642cb800c3febf55e89d25 {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor"} -C3N-01852.WXS.T.hg38 C3N-01852 GBM WXS tumor CPT0182500006 5f1e8acb-e97d-4915-9600-cd47b084100e_wxs_gdc_realn.bam 33157347070 BAM harmonized CPTAC3 732ec59e-ff14-4150-a059-def7486ab2eb bdeeabbcd952246526df1239e9ce373d {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor"} -C3N-01856.MethArray.Green.T C3N-01856 GBM Methylation_Array tumor CPT0162100006 203028200023_R07C01_Grn.idat 13676232 IDAT Green NA CPTAC3 176fdf47-2881-46dd-b523-24cc0f187472 a30107997b80767c812f05dfb77ca3bf {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor"} -C3N-01856.MethArray.Red.T C3N-01856 GBM Methylation_Array tumor CPT0162100006 203028200023_R07C01_Red.idat 13676232 IDAT Red NA CPTAC3 82992075-3e9f-4692-a5b9-6f7bcc319c82 af89966114f1efc90f8a6c9bd455e40f {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor"} -C3N-01856.RNA-Seq.chimeric.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.chimeric.gdc_realn.bam 114534263 BAM chimeric harmonized CPTAC3 187edc3e-8d6c-462c-9de7-18e638c098b3 dd8cbaffe58a15124c53c7d533df4879 {"aliquot_tag": "ALQ_eccc3821", "gdc_sample_type": "Primary Tumor"} -C3N-01856.RNA-Seq.genomic.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.genomic.gdc_realn.bam 9387023326 BAM genomic harmonized CPTAC3 334cc255-9fe6-4191-8e3f-a4c35a1e3808 613d86f1367c683ac10dd69eb1e5cf5c {"aliquot_tag": "ALQ_eccc3821", "gdc_sample_type": "Primary Tumor"} -C3N-01856.RNA-Seq.S9_L003_R1.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 3816425613 FASTQ S9_L003_R1 unaligned CPTAC3 ed6bb432-cdeb-4851-860d-43b50894e82a e9da7d6f3ed3b0500883a11c0a13cf50 {"aliquot_tag": "ALQ_eccc3821", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01856.RNA-Seq.S9_L003_R2.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4200919889 FASTQ S9_L003_R2 unaligned CPTAC3 9772e608-d91e-4d97-b16c-99dcbdd223e3 5361095fcf7d377785e41e528253c1fe {"aliquot_tag": "ALQ_eccc3821", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01856.RNA-Seq.transcriptome.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.transcriptome.gdc_realn.bam 10697722091 BAM transcriptome harmonized CPTAC3 d99d910d-6fca-4dee-bcd5-c04be5dde0ea ddf79483ed76ca07d7e0f6e863ca453e {"aliquot_tag": "ALQ_eccc3821", "gdc_sample_type": "Primary Tumor"} -C3N-01856.WGS.N C3N-01856 GBM WGS blood_normal CPT0162120002 CPT0162120002.WholeGenome.RP-1303.bam 60328961663 BAM aligned CPTAC3 6767a546-337a-4e3e-abd8-10a7599eafb4 ad0d9b21801eb70c83b99b4e236dcf0c {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01856.WGS.N.hg38 C3N-01856 GBM WGS blood_normal CPT0162120002 f10efa6b-8bd4-4cf3-ac29-40030b28813b_wgs_gdc_realn.bam 88047328190 BAM harmonized CPTAC3 9e90546a-b4c0-4061-ab38-a69473bad093 6a22a3edd4a2b0ee7cc400d69ff62112 {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01856.WGS.T C3N-01856 GBM WGS tumor CPT0162100006 CPT0162100006.WholeGenome.RP-1303.bam 54428926047 BAM aligned CPTAC3 e3434dbd-9786-48e6-b195-60d604e9f954 54cbc99e8633d7c107f50dbf30968419 {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor"} -C3N-01856.WGS.T.hg38 C3N-01856 GBM WGS tumor CPT0162100006 486abf4c-bd38-4ee2-a2bc-87df864d1423_wgs_gdc_realn.bam 79412028971 BAM harmonized CPTAC3 455856d5-1b60-4d78-8591-8aea797add9e 4a7929b7427177a2ad0576efaddbc9f8 {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor"} -C3N-01856.WXS.N C3N-01856 GBM WXS blood_normal CPT0162120002 CPT0162120002.WholeExome.RP-1303.bam 27008848602 BAM aligned CPTAC3 ba317a0d-42db-4036-8d42-b08e8853729d 625c7def36755d85889d7274e7a33cb1 {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01856.WXS.N.hg38 C3N-01856 GBM WXS blood_normal CPT0162120002 f10efa6b-8bd4-4cf3-ac29-40030b28813b_wxs_gdc_realn.bam 36009681356 BAM harmonized CPTAC3 65d4597a-2f75-430e-8e5a-b473be9db3d8 cf2afba6b6a3972350d4c3eff8d2c0e0 {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01856.WXS.T C3N-01856 GBM WXS tumor CPT0162100006 CPT0162100006.WholeExome.RP-1303.bam 28124689459 BAM aligned CPTAC3 1756a335-e596-4b7f-b8ea-ce2b4b46cf41 6f029e6204f53afc4093e8aaae35cc22 {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor"} -C3N-01856.WXS.T.hg38 C3N-01856 GBM WXS tumor CPT0162100006 486abf4c-bd38-4ee2-a2bc-87df864d1423_wxs_gdc_realn.bam 38716016715 BAM harmonized CPTAC3 357559e1-8bd5-413f-af67-9a9fa574c6fe ab2a8d591070d42dff64bf315ef2239e {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor"} -C3N-01857.MethArray.Green.T C3N-01857 GBM Methylation_Array tumor CPT0162140007 203027390040_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 0409d8ae-0b9c-49f9-b232-263a9ad5fb7e 875d0512bcc477f31a334729076daa09 {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor"} -C3N-01857.MethArray.Red.T C3N-01857 GBM Methylation_Array tumor CPT0162140007 203027390040_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 f6c9d0c2-5f37-4c9e-9bc7-cad49506c63a 91b2d5809425308f09316b80177246cc {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor"} -C3N-01857.miRNA-Seq.S11_L001_R1.T C3N-01857 GBM miRNA-Seq tumor CPT0162140010 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L001_R1_001.unaln.bam 253970312 BAM S11_L001_R1 unaligned CPTAC3 fce14d60-f061-4b9d-87a7-d9f3bead7b80 03133ff433632889cc276135cfa5c1be {"aliquot_tag": "ALQ_798b1704", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01857.miRNA-Seq.T.hg38 C3N-01857 GBM miRNA-Seq tumor CPT0162140010 d7454085-f11b-48e0-9e64-5897f79af354_mirnaseq_gdc_realn.bam 281095814 BAM harmonized CPTAC3 3654a2cc-16d9-4660-8fa5-eed7efba3415 ccbcdafe9d38349db21250577472fb07 {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor"} -C3N-01857.RNA-Seq.chimeric.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.chimeric.gdc_realn.bam 150041169 BAM chimeric harmonized CPTAC3 44a5b3ce-6ab1-4818-afbc-6cc78503ee1c 83e65bc05836e7bcc59ca2f8d6c6be15 {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor"} -C3N-01857.RNA-Seq.genomic.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.genomic.gdc_realn.bam 9255743064 BAM genomic harmonized CPTAC3 6229ca6d-1420-440d-9e42-7887697ae85f c98f44ca1360130969daa6f122a05f4a {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor"} -C3N-01857.RNA-Seq.S1_L006_R1.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R1_001.fastq.gz 4388086445 FASTQ S1_L006_R1 unaligned CPTAC3 75787440-f3e5-48f8-959f-9ff711677d3d 9a40add875717147682d0936339b7d6a {"aliquot_tag": "ALQ_798b1704", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01857.RNA-Seq.S1_L006_R2.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R2_001.fastq.gz 5012516281 FASTQ S1_L006_R2 unaligned CPTAC3 5d5a71db-4335-4e75-bdbd-3f23655710be 2df56b5f6c60541ecb1702981ab7c246 {"aliquot_tag": "ALQ_798b1704", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01857.RNA-Seq.transcriptome.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.transcriptome.gdc_realn.bam 9728345516 BAM transcriptome harmonized CPTAC3 e1403206-c003-4e75-b1da-2020b8295a4b a7863567ef9fe8547f7f2a9cf4f02fef {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor"} -C3N-01857.WGS.N C3N-01857 GBM WGS blood_normal CPT0162170002 CPT0162170002.WholeGenome.RP-1303.bam 64143017590 BAM aligned CPTAC3 c9c8b532-e688-453b-8cd5-3b3571ecdf85 2f058658f670d11d233839aab9061856 {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01857.WGS.N.hg38 C3N-01857 GBM WGS blood_normal CPT0162170002 3d771b8a-a107-41cc-b850-dd9639359d4e_wgs_gdc_realn.bam 92384124382 BAM harmonized CPTAC3 159e558f-428b-40aa-b176-ec3aeed9cd15 879106d632fd47ebc5b0730da33717e6 {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01857.WGS.T C3N-01857 GBM WGS tumor CPT0162140007 CPT0162140007.WholeGenome.RP-1303.bam 54854216548 BAM aligned CPTAC3 285a96cc-b3a8-40a6-8809-d6ce5db0040f a745598ae3a7fbbb0712d358c6b1ac8f {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor"} -C3N-01857.WGS.T.hg38 C3N-01857 GBM WGS tumor CPT0162140007 d41f100d-be16-400e-9596-2062c6eaad67_wgs_gdc_realn.bam 80021318021 BAM harmonized CPTAC3 29d2a834-5c30-49a1-ab88-3f601c274532 0bd2cb7be3b1cc985c6a999f8bc72674 {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor"} -C3N-01857.WXS.N C3N-01857 GBM WXS blood_normal CPT0162170002 CPT0162170002.WholeExome.RP-1303.bam 24663544407 BAM aligned CPTAC3 b5d70c98-ff36-443c-adfd-3cfcfbe26a04 65c58ba0d2514953a719562e1c6979bc {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01857.WXS.N.hg38 C3N-01857 GBM WXS blood_normal CPT0162170002 3d771b8a-a107-41cc-b850-dd9639359d4e_wxs_gdc_realn.bam 34072506241 BAM harmonized CPTAC3 55bd46d2-4c8d-47ed-85af-62a68f8eeebd eec73b0cdf8fa5c4a40af2a8ec97fa9c {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal"} -C3N-01857.WXS.T C3N-01857 GBM WXS tumor CPT0162140007 CPT0162140007.WholeExome.RP-1303.bam 22493029863 BAM aligned CPTAC3 e3745e2c-e529-4f77-a897-936662fb17fc d31b9cf862589dbb780f771b129b1406 {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor"} -C3N-01857.WXS.T.hg38 C3N-01857 GBM WXS tumor CPT0162140007 d41f100d-be16-400e-9596-2062c6eaad67_wxs_gdc_realn.bam 32063065543 BAM harmonized CPTAC3 38d4a1f6-dd44-47bd-87ca-9045c0611ca6 a53d9b84d180f62e01c9edfc0a10323e {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor"} -C3N-01858.MethArray.Green.T C3N-01858 HNSCC Methylation_Array tumor CPT0163840006 203220070154_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ab4c691c-f98d-4439-a07a-7899baee4113 9ef208fecbb5dff2ea482d33dd96fc16 {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor"} -C3N-01858.MethArray.Red.T C3N-01858 HNSCC Methylation_Array tumor CPT0163840006 203220070154_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 4a7571f2-511b-4af3-9b02-18b04cf34c2c af04bd971dc405121552132266b4542f {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor"} -C3N-01858.miRNA-Seq.S33_L002_R1.T C3N-01858 HNSCC miRNA-Seq tumor CPT0163840009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L002_R1_001.unaln.bam 207901865 BAM S33_L002_R1 unaligned CPTAC3 4ccc1ebf-8248-4795-801a-cd143b77b1ab 3e83b0b6d194f7824b14ad542b1c65e6 {"aliquot_tag": "ALQ_9834c49d", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01858.miRNA-Seq.T.hg38 C3N-01858 HNSCC miRNA-Seq tumor CPT0163840009 13ed8cd1-082e-496c-bc11-6e35c5a6ba6d_mirnaseq_gdc_realn.bam 239186255 BAM harmonized CPTAC3 745ce889-7926-4e55-9b2d-9bc9da32ac8b 5f5f9ae46bd30b1e180bb56aee5d87c8 {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.chimeric.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.chimeric.gdc_realn.bam 78424555 BAM chimeric harmonized CPTAC3 d9ada9fb-b35c-4a6e-a964-1a00fa1c0949 d79cabcd03d551e8985fee260d1bd084 {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.chimeric.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.chimeric.gdc_realn.bam 179341851 BAM chimeric harmonized CPTAC3 72eee029-2d5f-482b-bcc6-afb56a5e645c f3a2bde32dd00804515a813e0c6f6ca9 {"aliquot_tag": "ALQ_ab908ffe", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.genomic.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.genomic.gdc_realn.bam 6209656160 BAM genomic harmonized CPTAC3 834109e1-d544-4251-aae1-5e4351b2528d ef83c1e9d3f46519ffc2ab6777ba1e83 {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.genomic.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.genomic.gdc_realn.bam 9246584694 BAM genomic harmonized CPTAC3 7b974187-2778-40bd-80a0-f28870ef72bb 427ee056fe728c8c4bbcbd138b4a7cb7 {"aliquot_tag": "ALQ_ab908ffe", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.S3_L001_R1.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R1_001.fastq.gz 2878963606 FASTQ S3_L001_R1 unaligned CPTAC3 bae560c8-d7af-44f5-965a-da697a6e0e1c 0ccac52b9beb7d9c33907d7985e0106b {"aliquot_tag": "ALQ_9834c49d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.S3_L001_R2.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R2_001.fastq.gz 3196094888 FASTQ S3_L001_R2 unaligned CPTAC3 9f3e8507-33fa-4ac0-8a7b-3254f592d3b0 dbce8af3eab97e8f86454eed347aa0a4 {"aliquot_tag": "ALQ_9834c49d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.S49_R1.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R1_001.fastq.gz 6405948347 FASTQ S49_R1 unaligned CPTAC3 bf3622fe-6ee6-4a63-88f7-696916e75a5d 3aca44fb859358a82936412944b2e8c2 {"aliquot_tag": "ALQ_ab908ffe", "sample": "S49", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.S49_R2.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R2_001.fastq.gz 6600620434 FASTQ S49_R2 unaligned CPTAC3 74695714-ccc5-4c1e-bbbd-03c1f3f37dd3 37929447c4b7984b62435b9d9eca21de {"aliquot_tag": "ALQ_ab908ffe", "sample": "S49", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.transcriptome.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.transcriptome.gdc_realn.bam 7978032881 BAM transcriptome harmonized CPTAC3 1c741da1-2e45-4e6c-87c9-e128ad60e382 8e4c6d65b4a55676bca4adbf5c2339fc {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor"} -C3N-01858.RNA-Seq.transcriptome.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.transcriptome.gdc_realn.bam 5418417712 BAM transcriptome harmonized CPTAC3 22cdfc5e-9345-49a8-9d7a-5a76d9e6ea69 55cd9d84b1003511c83c390512182b2a {"aliquot_tag": "ALQ_ab908ffe", "gdc_sample_type": "Primary Tumor"} -C3N-01858.WGS.N C3N-01858 HNSCC WGS blood_normal CPT0163900002 CPT0163900002.WholeGenome.RP-1303.bam 57736901249 BAM aligned CPTAC3 c62f6004-2986-4bb7-b910-9578621c9f7a 23b72dbfab783d18c10192fc0d9a1828 {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal"} -C3N-01858.WGS.N.hg38 C3N-01858 HNSCC WGS blood_normal CPT0163900002 df6e28a1-8dd7-481b-b12a-c8ebd2fd973d_wgs_gdc_realn.bam 85073140408 BAM harmonized CPTAC3 86358fb6-9951-4ce5-8868-46b52bc57403 1075c0b7df3954634e7bdc8345c48e01 {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal"} -C3N-01858.WGS.T C3N-01858 HNSCC WGS tumor CPT0163840006 CPT0163840006.WholeGenome.RP-1303.bam 80355628566 BAM aligned CPTAC3 be7670fa-a7c8-4cca-b02c-dac64f280c26 7425ae22e83ecf73e4e6ea7d74931a3b {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor"} -C3N-01858.WGS.T.hg38 C3N-01858 HNSCC WGS tumor CPT0163840006 a73a9c1a-c8de-4763-8f7a-0e85dd18e9a3_wgs_gdc_realn.bam 119155065295 BAM harmonized CPTAC3 3967deb8-a165-43e2-8d6b-6871e4866dd6 22212248efc834ee9438d517a12a309f {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor"} -C3N-01858.WXS.N C3N-01858 HNSCC WXS blood_normal CPT0163900002 CPT0163900002.WholeExome.RP-1303.bam 27404724523 BAM aligned CPTAC3 c3aff288-2177-41bb-b262-e445ac983869 2c651351fdbd72133b4f052ee1b2112a {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal"} -C3N-01858.WXS.N.hg38 C3N-01858 HNSCC WXS blood_normal CPT0163900002 df6e28a1-8dd7-481b-b12a-c8ebd2fd973d_wxs_gdc_realn.bam 37424266696 BAM harmonized CPTAC3 444f9c9b-ab29-4b6e-ae6e-27a01d059de3 a619601ada6c641fca6151cda19607a3 {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal"} -C3N-01858.WXS.T C3N-01858 HNSCC WXS tumor CPT0163840006 CPT0163840006.WholeExome.RP-1303.bam 20654739122 BAM aligned CPTAC3 6cbc4099-eae8-4583-bbb7-3408cb59319f ed000faa7f5021df8238fc4586f0debd {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor"} -C3N-01858.WXS.T.hg38 C3N-01858 HNSCC WXS tumor CPT0163840006 a73a9c1a-c8de-4763-8f7a-0e85dd18e9a3_wxs_gdc_realn.bam 28605244130 BAM harmonized CPTAC3 fc3cd5c8-68ba-4a45-92cc-305b2244f8c8 1ca06411511e6ca97c89786463777510 {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor"} -C3N-01859.MethArray.Green.T C3N-01859 HNSCC Methylation_Array tumor CPT0163910006 203219640047_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 cf312fc8-ecfd-4069-b936-fb81b40de85e 6f1f89e51639f11d78e609fd09e27d5e {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor"} -C3N-01859.MethArray.Red.T C3N-01859 HNSCC Methylation_Array tumor CPT0163910006 203219640047_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 7bd51f73-8827-4d69-a140-0a02a285bfa6 05e05b646cff440ceef3fc3ef473beec {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor"} -C3N-01859.miRNA-Seq.S34_L002_R1.T C3N-01859 HNSCC miRNA-Seq tumor CPT0163910009 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L002_R1_001.unaln.bam 192200176 BAM S34_L002_R1 unaligned CPTAC3 77db198e-3ac3-40ed-956e-b667e5a5c3cc 8b24d11b512841edf9bbd37ee8136eee {"aliquot_tag": "ALQ_9b889848", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01859.miRNA-Seq.T.hg38 C3N-01859 HNSCC miRNA-Seq tumor CPT0163910009 e133fcde-9525-40e1-9d94-8544fb4399d6_mirnaseq_gdc_realn.bam 214133370 BAM harmonized CPTAC3 f79a90b2-0352-4fe7-888b-64841b83618e 2451d6052645ffd6cdc4244449d0361c {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.chimeric.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.chimeric.gdc_realn.bam 94613484 BAM chimeric harmonized CPTAC3 b7348be1-22a7-43e1-bc13-cac4c3d8eb9a e0fe8e3a877d2ae984440347f0c5e7fd {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.chimeric.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.chimeric.gdc_realn.bam 143953918 BAM chimeric harmonized CPTAC3 daa0492f-3ee0-4136-986d-a865195dfd98 5e57c0f5276a69cfc9f8e6b1a96f30c6 {"aliquot_tag": "ALQ_6ddc3e2a", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.genomic.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.genomic.gdc_realn.bam 6488743473 BAM genomic harmonized CPTAC3 a6eb0a89-ca2b-4e01-9424-79387b0d6df2 5b970ac8226b725bf6085cbf3e5297c0 {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.genomic.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.genomic.gdc_realn.bam 8520904033 BAM genomic harmonized CPTAC3 fae85f0a-9056-4b4a-b7be-bb8431a64e2e d7b635cd475825d6ea618161fd6e6fd8 {"aliquot_tag": "ALQ_6ddc3e2a", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.S2_L001_R1.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3033398658 FASTQ S2_L001_R1 unaligned CPTAC3 7178c94c-fbf8-4692-bec4-3147049203de cf37cecc2fcc9b6e5eab3513e9a5c350 {"aliquot_tag": "ALQ_9b889848", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.S2_L001_R2.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R2_001.fastq.gz 3331327045 FASTQ S2_L001_R2 unaligned CPTAC3 3e2513e3-1bbd-4e76-8e87-cc7e44061857 f70daf1825ceec8079757136556cc36e {"aliquot_tag": "ALQ_9b889848", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.S37_R1.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R1_001.fastq.gz 5710099415 FASTQ S37_R1 unaligned CPTAC3 acab6dfb-8de0-454f-8143-8c00d1e682f2 b6148be5429495ec590ffd6e6ccfc2ce {"aliquot_tag": "ALQ_6ddc3e2a", "sample": "S37", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.S37_R2.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R2_001.fastq.gz 5912647006 FASTQ S37_R2 unaligned CPTAC3 16de1515-fe26-412f-a724-03e7953e7dc4 a78dfee37287b2eb5f58bc36e57a9a1b {"aliquot_tag": "ALQ_6ddc3e2a", "sample": "S37", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.transcriptome.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.transcriptome.gdc_realn.bam 8404711687 BAM transcriptome harmonized CPTAC3 3014901c-9947-4e43-ae64-ebd6953b6910 7adc78e06287f0d1707cad6babc8d6bb {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor"} -C3N-01859.RNA-Seq.transcriptome.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.transcriptome.gdc_realn.bam 6872802608 BAM transcriptome harmonized CPTAC3 2cf021fe-f402-401d-a7a0-1f5e8c8ca6da 45d326b534e7d4c8bebbbe1719e16337 {"aliquot_tag": "ALQ_6ddc3e2a", "gdc_sample_type": "Primary Tumor"} -C3N-01859.WGS.N C3N-01859 HNSCC WGS blood_normal CPT0163950002 CPT0163950002.WholeGenome.RP-1303.bam 70929559318 BAM aligned CPTAC3 aaf6fe09-cced-4880-93c3-34862faf3acd 26295a378bb6c8553fcc48aae10a0631 {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal"} -C3N-01859.WGS.N.hg38 C3N-01859 HNSCC WGS blood_normal CPT0163950002 7450df27-83a7-4d2a-ba70-02486c38bc94_wgs_gdc_realn.bam 103818412879 BAM harmonized CPTAC3 1e6ad2f5-ab4c-4b06-badd-2d0d246a52bf 0cf2325efb7b2288915dc7150a0b7800 {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal"} -C3N-01859.WGS.T C3N-01859 HNSCC WGS tumor CPT0163910006 CPT0163910006.WholeGenome.RP-1303.bam 62525738183 BAM aligned CPTAC3 4a576f53-3615-4ed4-bc63-8eca44038e13 ab7a16a042157b725a8acfb4d13f354b {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor"} -C3N-01859.WGS.T.hg38 C3N-01859 HNSCC WGS tumor CPT0163910006 03fc4fbc-1565-4953-b79d-6a7cd399e855_wgs_gdc_realn.bam 92275718220 BAM harmonized CPTAC3 a5713065-22b3-429c-8810-79756ea50ed1 987d291566bdcbf8c7082daff6fea0d1 {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor"} -C3N-01859.WXS.N C3N-01859 HNSCC WXS blood_normal CPT0163950002 CPT0163950002.WholeExome.RP-1303.bam 23554721633 BAM aligned CPTAC3 e4cff96a-f4e1-4488-a98b-af93aa23459a 2e3641b358e4c0f9b8b7dc715ab1d1e5 {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal"} -C3N-01859.WXS.N.hg38 C3N-01859 HNSCC WXS blood_normal CPT0163950002 7450df27-83a7-4d2a-ba70-02486c38bc94_wxs_gdc_realn.bam 32588479678 BAM harmonized CPTAC3 81abe19f-ebd3-44de-ad1d-5102988676a0 5947afbcbc0ea5b5c6a0c441790f63ac {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal"} -C3N-01859.WXS.T C3N-01859 HNSCC WXS tumor CPT0163910006 CPT0163910006.WholeExome.RP-1303.bam 20261666379 BAM aligned CPTAC3 6549446e-94d9-4ddc-9415-ae8e168dabc6 f35e2ac3485edbe44fbaee804bbef10d {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor"} -C3N-01859.WXS.T.hg38 C3N-01859 HNSCC WXS tumor CPT0163910006 03fc4fbc-1565-4953-b79d-6a7cd399e855_wxs_gdc_realn.bam 28632766504 BAM harmonized CPTAC3 826d7093-20a4-4e54-99a4-ad90e50f0f2f 6e9c96737b4e578d07113b102662468b {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor"} -C3N-01871.MethArray.Green.T C3N-01871 UCEC Methylation_Array tumor CPT0117010007 203219640160_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 02f46409-96cb-444d-936a-5cbf8767a7ef ee0428b2a326969684f6890aed04c341 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor"} -C3N-01871.MethArray.Red.T C3N-01871 UCEC Methylation_Array tumor CPT0117010007 203219640160_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 865d1bce-ca5d-46c3-af86-6b4ae094d8e9 8dff64c09dca93d5429973fbbde85a92 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor"} -C3N-01871.miRNA-Seq.S1_L004_R1.T C3N-01871 UCEC miRNA-Seq tumor CPT0117010010 190108_UNC31-K00269_0176_AHYGLVBBXX_ATCACG_S1_L004_R1_001.unaln.bam 182866974 BAM S1_L004_R1 unaligned CPTAC3 c5b082a0-f7be-4823-97bd-70af61e01373 343aefeaedec340bbe92562e98911520 {"aliquot_tag": "ALQ_22ca6d6f", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01871.miRNA-Seq.T.hg38 C3N-01871 UCEC miRNA-Seq tumor CPT0117010010 d9d92907-77f7-4606-962b-912a75f4c70b_mirnaseq_gdc_realn.bam 204680613 BAM harmonized CPTAC3 16290019-d482-4f0f-842d-6479772d8fef fd0dafcd2a4c7ac6c8a065b079e98193 {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01871.RNA-Seq.chimeric.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.chimeric.gdc_realn.bam 86828047 BAM chimeric harmonized CPTAC3 fc6f0f94-eba8-4b11-bf03-367d1423c0d7 f791e6fb9c1dd2474e72039fcf1ce147 {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01871.RNA-Seq.genomic.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.genomic.gdc_realn.bam 10210381649 BAM genomic harmonized CPTAC3 cadac63a-657d-483b-8325-0916bb8415ce 4f64fa7dd86a7fc809a2a77e4168b30f {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01871.RNA-Seq.S7_L003_R1.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R1_001.fastq.gz 5112789242 FASTQ S7_L003_R1 unaligned CPTAC3 c582219c-ff38-4076-b3b3-ddf8067c82b1 aa6dfb9109ed36678efea7aa1fddc1a1 {"aliquot_tag": "ALQ_22ca6d6f", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01871.RNA-Seq.S7_L003_R2.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R2_001.fastq.gz 5039604970 FASTQ S7_L003_R2 unaligned CPTAC3 5ffcee57-ae42-445e-9a13-7ccc027dd62d 0ad50d433e5ae0caaf2fb9cb3d277f52 {"aliquot_tag": "ALQ_22ca6d6f", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01871.RNA-Seq.transcriptome.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.transcriptome.gdc_realn.bam 12155849430 BAM transcriptome harmonized CPTAC3 4913e64b-c853-4f27-bf59-160e2d5a7ed0 8386c7c09b76f26eba2010ca651533f8 {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor"} -C3N-01871.WGS.N C3N-01871 UCEC WGS blood_normal CPT0117110002 CPT0117110002.WholeGenome.RP-1303.bam 64308827611 BAM aligned CPTAC3 0bc9a0c6-0d57-4cfd-b767-0518abdc0b9f bd1ba3aa346ce6bc91913d93c4ac0fb3 {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01871.WGS.N.hg38 C3N-01871 UCEC WGS blood_normal CPT0117110002 15e2d9c7-449e-4c2d-be94-23fd0be95b3f_wgs_gdc_realn.bam 93851568090 BAM harmonized CPTAC3 3a600d57-b013-4ed1-897a-286cd286bbd4 7356ff4c015db76d83d51debdeb890fe {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01871.WGS.T C3N-01871 UCEC WGS tumor CPT0117010007 CPT0117010007.WholeGenome.RP-1303.bam 63503042836 BAM aligned CPTAC3 70be389b-0730-4f09-9eab-fdfdaaff39bc d81be6c39ca0b59688a6bfb790b15ffc {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor"} -C3N-01871.WGS.T.hg38 C3N-01871 UCEC WGS tumor CPT0117010007 5c315eed-6b0f-47db-8b93-14cb02f66a3f_wgs_gdc_realn.bam 94526264448 BAM harmonized CPTAC3 d419dd7f-9117-4372-93c6-019549d829f0 73e800d26815b9c9b933c02d97062565 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor"} -C3N-01871.WXS.N C3N-01871 UCEC WXS blood_normal CPT0117110002 CPT0117110002.WholeExome.RP-1303.bam 23130062093 BAM aligned CPTAC3 face7da5-76e6-4505-b783-7950a13bcf51 bfec7efd392b88d01ac5bae6429c0afe {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01871.WXS.N.hg38 C3N-01871 UCEC WXS blood_normal CPT0117110002 15e2d9c7-449e-4c2d-be94-23fd0be95b3f_wxs_gdc_realn.bam 32080876089 BAM harmonized CPTAC3 ecf9bb34-f497-45c8-a677-f7ef0d4983f0 2cc613e8312e8aedd1900313f9626157 {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal"} -C3N-01871.WXS.T C3N-01871 UCEC WXS tumor CPT0117010007 CPT0117010007.WholeExome.RP-1303.bam 37199224018 BAM aligned CPTAC3 8f73a828-8bca-42ef-b0dc-5dcddc739d01 c2171bde1fc95ef3e446fe15fe8f10f9 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor"} -C3N-01871.WXS.T.hg38 C3N-01871 UCEC WXS tumor CPT0117010007 5c315eed-6b0f-47db-8b93-14cb02f66a3f_wxs_gdc_realn.bam 52772478841 BAM harmonized CPTAC3 ea17b302-18ac-40ee-a024-22132a9b9708 8251f2154b31a405c63b3aba3bb58a83 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor"} -C3N-01873.MethArray.Green.T C3N-01873 UCEC Methylation_Array tumor CPT0117230006 203219640157_R02C01_Grn.idat 13676227 IDAT Green NA CPTAC3 486fc880-bb47-4703-a1bb-fa77aea4976d a011fbdb3fc38ae5f59cd88175aa1b47 {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor"} -C3N-01873.MethArray.Red.T C3N-01873 UCEC Methylation_Array tumor CPT0117230006 203219640157_R02C01_Red.idat 13676227 IDAT Red NA CPTAC3 c0c8ec2f-0076-4caf-b82c-2ee469b703cf a7e4ecf5393089c0bc478c3486240569 {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor"} -C3N-01873.miRNA-Seq.S26_L005_R1.T C3N-01873 UCEC miRNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGAGC_S26_L005_R1_001.unaln.bam 106503751 BAM S26_L005_R1 unaligned CPTAC3 e3eb4a88-12a4-4d1b-b77e-611241a02bec f7fdbe1ee5a6d392c482033da553d865 {"aliquot_tag": "ALQ_750516e1", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01873.miRNA-Seq.T.hg38 C3N-01873 UCEC miRNA-Seq tumor CPT0117230009 7073ab2d-0ad5-46e4-a343-5aaf22655e1e_mirnaseq_gdc_realn.bam 117207801 BAM harmonized CPTAC3 bbee6544-713f-4666-a873-31cbeedb1704 40016184b7968939c156798bb2360139 {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor"} -C3N-01873.RNA-Seq.chimeric.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.chimeric.gdc_realn.bam 60486315 BAM chimeric harmonized CPTAC3 6df890ce-f2d0-48af-8614-84dbde3f9304 b46790842b431b5f86b75ef40e59e3ab {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor"} -C3N-01873.RNA-Seq.genomic.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.genomic.gdc_realn.bam 10402417053 BAM genomic harmonized CPTAC3 12555655-d4e6-4a32-b773-a6b5faf3d4c8 f7c2158735f7332e9c162bc1a14628b4 {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor"} -C3N-01873.RNA-Seq.S6_L002_R1.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4434120095 FASTQ S6_L002_R1 unaligned CPTAC3 f90fd46f-b7f0-4fda-8263-3474ed77d522 466d01ebaa1d4bf6f1d1e227b4dbbf7a {"aliquot_tag": "ALQ_750516e1", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01873.RNA-Seq.S6_L002_R2.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4662189253 FASTQ S6_L002_R2 unaligned CPTAC3 47e0c561-0024-40fa-8129-855e50f14a27 fb39eb073b484b6ea2a0262e327cdb48 {"aliquot_tag": "ALQ_750516e1", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01873.RNA-Seq.transcriptome.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.transcriptome.gdc_realn.bam 9604799535 BAM transcriptome harmonized CPTAC3 6cf3c17b-7a67-44f9-b611-8fba83f6787a 8e64ccb92734bd8fed5a9ee7affe6e9a {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor"} -C3N-01873.WGS.N C3N-01873 UCEC WGS blood_normal CPT0117290002 CPT0117290002.WholeGenome.RP-1303.bam 67286218104 BAM aligned CPTAC3 26232769-3b76-487f-91ff-5501dfb82799 544e097faa6797d3ad3fe23032699d07 {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01873.WGS.N.hg38 C3N-01873 UCEC WGS blood_normal CPT0117290002 61f6b660-fa1d-401a-a8ea-230aef418f5b_wgs_gdc_realn.bam 94793179025 BAM harmonized CPTAC3 9468382d-89c9-4215-8319-a9e24967233a 0da58781b78ada0ffa3469b832a3ed9c {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01873.WGS.T C3N-01873 UCEC WGS tumor CPT0117230006 CPT0117230006.WholeGenome.RP-1303.bam 60859743768 BAM aligned CPTAC3 cc578a23-ea82-4365-a13f-ca77a7ed2f03 362e7349ff2f678fd3809df5ad9c64c6 {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor"} -C3N-01873.WGS.T.hg38 C3N-01873 UCEC WGS tumor CPT0117230006 965732fd-4da5-4925-a4c1-ad147d95b957_wgs_gdc_realn.bam 89034011131 BAM harmonized CPTAC3 639cdd04-1335-4199-99d9-5bb73a2f660e e686f1605e2acc9fcde623722d8bf85e {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor"} -C3N-01873.WXS.N C3N-01873 UCEC WXS blood_normal CPT0117290002 CPT0117290002.WholeExome.RP-1303.bam 29940338494 BAM aligned CPTAC3 3329a133-6e46-4b3a-93f4-0d8e1fbef9aa 509e19ce18f27f61a72387e25dcb65d9 {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01873.WXS.N.hg38 C3N-01873 UCEC WXS blood_normal CPT0117290002 61f6b660-fa1d-401a-a8ea-230aef418f5b_wxs_gdc_realn.bam 41139403640 BAM harmonized CPTAC3 f84138ae-03a0-4dcc-ba44-201f8edbfc3e 13ba837865e89371186801ebbc9200bd {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-01873.WXS.T C3N-01873 UCEC WXS tumor CPT0117230006 CPT0117230006.WholeExome.RP-1303.bam 24655158371 BAM aligned CPTAC3 ba989767-e372-42f6-a6e2-e5784133b604 2b28bf9111db30784d571c42026f761f {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor"} -C3N-01873.WXS.T.hg38 C3N-01873 UCEC WXS tumor CPT0117230006 965732fd-4da5-4925-a4c1-ad147d95b957_wxs_gdc_realn.bam 34012236917 BAM harmonized CPTAC3 26653a1d-51eb-497f-b61e-95cef65b8608 2d7cc78367935f47143839f56dfcaacc {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor"} -C3N-01874.MethArray.Green.T C3N-01874 UCEC Methylation_Array tumor CPT0117300006 203219640068_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ef8cc373-e9ef-455c-bcad-cf2aa38f17b7 aec7fc8737cb27551d23cbe2e0085de0 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor"} -C3N-01874.MethArray.Red.T C3N-01874 UCEC Methylation_Array tumor CPT0117300006 203219640068_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 57aaedbd-7d4e-4292-ad60-2228186349db 0ff5498977a1b0bdc22954aece614580 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor"} -C3N-01874.miRNA-Seq.S27_L005_R1.T C3N-01874 UCEC miRNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATTCCT_S27_L005_R1_001.unaln.bam 209066989 BAM S27_L005_R1 unaligned CPTAC3 a770269f-9532-47fd-9327-7f07669f3360 375b7249e783f096d204466dee238efc {"aliquot_tag": "ALQ_f9f9bf94", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01874.miRNA-Seq.T.hg38 C3N-01874 UCEC miRNA-Seq tumor CPT0117300009 83747dfe-22cf-466f-a294-69f03341d35b_mirnaseq_gdc_realn.bam 225636049 BAM harmonized CPTAC3 aa44751e-8ecc-4cfd-ad1c-a993a9755dca 5e7c1a1d822d1bfb379d1274ad050905 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.chimeric.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.chimeric.gdc_realn.bam 80580748 BAM chimeric harmonized CPTAC3 de9429c4-5320-49bb-a507-da14a39d07d5 793322cb24cebc2b56507cfeca15bb83 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.chimeric.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.chimeric.gdc_realn.bam 90342724 BAM chimeric harmonized CPTAC3 c2167960-43d5-4d2a-9b66-a3f8d5efceee eb813b2cc36bd548fe438b95128f7167 {"aliquot_tag": "ALQ_f3f21fb3", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.genomic.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.genomic.gdc_realn.bam 9290898116 BAM genomic harmonized CPTAC3 8f4e8f09-3a1a-4f8f-b44b-0e22c6982d63 0d5cefb92be6f6c643123bd8f9d0edb0 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.genomic.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.genomic.gdc_realn.bam 5421209492 BAM genomic harmonized CPTAC3 6f32e48b-d84c-40fc-8d54-705ad3c0ca18 294cd6826138713a5f11643d1a5845d5 {"aliquot_tag": "ALQ_f3f21fb3", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.S8_L002_R1.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R1_001.fastq.gz 4265998735 FASTQ S8_L002_R1 unaligned CPTAC3 d97a854b-3984-40dd-b01e-5810d95b0d69 58e1e13c7a593fb761f18f64d88da0b9 {"aliquot_tag": "ALQ_f9f9bf94", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.S8_L002_R2.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R2_001.fastq.gz 4481104167 FASTQ S8_L002_R2 unaligned CPTAC3 3e8f5bf6-4e83-4d41-966c-627b192d3cad 1c9944c83cdef55e89cd643e6ec65729 {"aliquot_tag": "ALQ_f9f9bf94", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.S95_R1.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R1_001.fastq.gz 2913411714 FASTQ S95_R1 unaligned CPTAC3 cb567b7a-690d-4c0b-bf09-a463ca1b0459 b5d1ad424a16c7cab7cc7f9c94b059b8 {"aliquot_tag": "ALQ_f3f21fb3", "sample": "S95", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.S95_R2.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R2_001.fastq.gz 2999780568 FASTQ S95_R2 unaligned CPTAC3 501a7f08-f065-4649-88d3-8bf8325ef5cb f35d4119cce2e6b197bfd4800804b309 {"aliquot_tag": "ALQ_f3f21fb3", "sample": "S95", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.transcriptome.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.transcriptome.gdc_realn.bam 9529150511 BAM transcriptome harmonized CPTAC3 f3188d5b-c6c7-4bc7-81ca-b0e4c1c18787 1a8f2c99bab0385614a41d5845af8a47 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor"} -C3N-01874.RNA-Seq.transcriptome.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.transcriptome.gdc_realn.bam 2528218415 BAM transcriptome harmonized CPTAC3 71157d6e-c181-4ea2-916c-010416f42e71 a8249e3fc4de88bf3c474332bffb2918 {"aliquot_tag": "ALQ_f3f21fb3", "gdc_sample_type": "Primary Tumor"} -C3N-01874.WGS.N C3N-01874 UCEC WGS blood_normal CPT0117360002 CPT0117360002.WholeGenome.RP-1303.bam 64878429530 BAM aligned CPTAC3 57893ab6-fb82-4b70-b2bd-eb0225caee32 d74575a7d2b016365e9523923e1454a5 {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01874.WGS.N.hg38 C3N-01874 UCEC WGS blood_normal CPT0117360002 4b3d1903-bd55-4ecc-8c23-78b99d158758_wgs_gdc_realn.bam 93270235466 BAM harmonized CPTAC3 85bdde21-c545-4344-82cf-6d03f5dadcb8 57d5ae01960faa3bc867cf4ab629bf48 {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01874.WGS.T C3N-01874 UCEC WGS tumor CPT0117300006 CPT0117300006.WholeGenome.RP-1303.bam 61255942774 BAM aligned CPTAC3 b15bc90f-0fbe-4924-9796-327420b3ae04 5bf72c43db6e459b9d40d8717614e69d {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor"} -C3N-01874.WGS.T.hg38 C3N-01874 UCEC WGS tumor CPT0117300006 f7d28c63-6c3f-4eb3-80f7-af6930366f7f_wgs_gdc_realn.bam 89512305135 BAM harmonized CPTAC3 7dede6ac-4621-4493-8324-c6ff467c3777 f6d84c9f0836f84ff325e17d7fe09cc2 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor"} -C3N-01874.WXS.N C3N-01874 UCEC WXS blood_normal CPT0117360002 CPT0117360002.WholeExome.RP-1303.bam 25527616812 BAM aligned CPTAC3 24444fa5-89ca-4533-a6a3-662c6c2daf76 fa4bd5fcc84929a0edaa19549e759632 {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01874.WXS.N.hg38 C3N-01874 UCEC WXS blood_normal CPT0117360002 4b3d1903-bd55-4ecc-8c23-78b99d158758_wxs_gdc_realn.bam 35094825374 BAM harmonized CPTAC3 010baa2e-162b-455e-bf39-760ab3a978f3 1324e045929fd21af02cf56a8467dc6a {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal"} -C3N-01874.WXS.T C3N-01874 UCEC WXS tumor CPT0117300006 CPT0117300006.WholeExome.RP-1303.bam 25276886349 BAM aligned CPTAC3 640148bc-3c85-4f53-a551-411e57d31bb5 368ec386a6fc58505eae7c9f95c485f7 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor"} -C3N-01874.WXS.T.hg38 C3N-01874 UCEC WXS tumor CPT0117300006 f7d28c63-6c3f-4eb3-80f7-af6930366f7f_wxs_gdc_realn.bam 34740686940 BAM harmonized CPTAC3 c8abad79-573c-4599-b651-98e9b0161f79 32bcff301940194bfa7abe0b693b77a3 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor"} -C3N-01875.MethArray.Green.T C3N-01875 UCEC Methylation_Array tumor CPT0117370007 203219670217_R03C01_Grn.idat 13676220 IDAT Green NA CPTAC3 52ac0970-293a-4161-8261-a6ba497d1724 58fb6fe98b2c6100277677f0ee2af3c7 {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor"} -C3N-01875.MethArray.Red.T C3N-01875 UCEC Methylation_Array tumor CPT0117370007 203219670217_R03C01_Red.idat 13676220 IDAT Red NA CPTAC3 116c84c0-2f14-4c46-aa72-bf1126d022c5 0bc17fa47e9d9b91b4289f6afafc003a {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor"} -C3N-01875.miRNA-Seq.A.hg38 C3N-01875 UCEC miRNA-Seq tissue_normal CPT0117390006 09991dad-569c-4519-a6a1-505aa2d6134e_mirnaseq_gdc_realn.bam 254189884 BAM harmonized CPTAC3 fec05ddf-ce00-4467-b37b-78fe08c92dfb b1a6e370245e9c27c56457943ca7ed34 {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01875.miRNA-Seq.S28_L005_R1.T C3N-01875 UCEC miRNA-Seq tumor CPT0117370010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L005_R1_001.unaln.bam 213047372 BAM S28_L005_R1 unaligned CPTAC3 5294be67-eac0-4654-9014-8c4ca569f04b 939432a2557e4afef9c7a8f51d9b5248 {"aliquot_tag": "ALQ_2b1eea61", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01875.miRNA-Seq.S47_L003_R1.A C3N-01875 UCEC miRNA-Seq tissue_normal CPT0117390006 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGAAG_S47_L003_R1_001.unaln.bam 218853311 BAM S47_L003_R1 unaligned CPTAC3 cbf5e88a-114f-4b21-ad5a-0202c2f7751d f9714ca5e7888dd2cb3814afbadd9ca1 {"aliquot_tag": "ALQ_6456c074", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01875.miRNA-Seq.T.hg38 C3N-01875 UCEC miRNA-Seq tumor CPT0117370010 524b08b0-dc8f-4361-a7ef-841a8806ea34_mirnaseq_gdc_realn.bam 237774592 BAM harmonized CPTAC3 aa403b46-5225-4821-a913-44cd6cd48dd9 09fc9cf5445ea838a60136a7ae32e842 {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.chimeric.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.chimeric.gdc_realn.bam 46969022 BAM chimeric harmonized CPTAC3 f256ea4e-9b21-4ea1-b752-2a2bb63e3b66 521e7adcbd53e23c1e37f46f2d9337a6 {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01875.RNA-Seq.chimeric.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.chimeric.gdc_realn.bam 61424775 BAM chimeric harmonized CPTAC3 68b789ae-2207-45ba-9fb4-d017425acafa 5c43e906420e3f128ae429868422e72a {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.chimeric.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.chimeric.gdc_realn.bam 300173612 BAM chimeric harmonized CPTAC3 4a2a0075-7d9a-41f8-b53f-094e3018399c f5858d28637ad5f044b90b26c395890e {"aliquot_tag": "ALQ_672b973", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.genomic.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.genomic.gdc_realn.bam 9108565109 BAM genomic harmonized CPTAC3 1bcc8bfd-5841-48cf-8cc7-7f3c4e9161bd 87af12801334a5c45d728441348f8f3a {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01875.RNA-Seq.genomic.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.genomic.gdc_realn.bam 8184371762 BAM genomic harmonized CPTAC3 bcf6f2a4-0e6d-4730-a086-abae68de3035 f5c50debcfb67df7a19392ce06394a98 {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.genomic.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.genomic.gdc_realn.bam 12155013221 BAM genomic harmonized CPTAC3 90ea6ff9-ac98-4508-8fe2-67729ea87d93 ef3147dc0343d4e18f58bba68ca2fe52 {"aliquot_tag": "ALQ_672b973", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.S1_L001_R1.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3932753521 FASTQ S1_L001_R1 unaligned CPTAC3 2d4e5d3b-3348-4e13-bf3c-8c724df75ee4 54812e848805ee020eb19439d046d48a {"aliquot_tag": "ALQ_6456c074", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01875.RNA-Seq.S1_L001_R2.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 4328448634 FASTQ S1_L001_R2 unaligned CPTAC3 dbdf9de9-3c31-47a1-bfc9-3cf812b0d767 f11a931636f2b2d83bab90e1f78c84b6 {"aliquot_tag": "ALQ_6456c074", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01875.RNA-Seq.S57_R1.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R1_001.fastq.gz 8276135256 FASTQ S57_R1 unaligned CPTAC3 9efa5228-7f68-4e0a-8dea-08f05ff3b94c 69f5a530c46418d63c6e8198af532e9c {"aliquot_tag": "ALQ_672b973", "sample": "S57", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.S57_R2.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R2_001.fastq.gz 8592493759 FASTQ S57_R2 unaligned CPTAC3 b3bec528-e765-4e31-8e59-72243be01608 2eda9d94fd3f039a9595e778f1c4d131 {"aliquot_tag": "ALQ_672b973", "sample": "S57", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.S7_L002_R1.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R1_001.fastq.gz 3948746418 FASTQ S7_L002_R1 unaligned CPTAC3 572fe453-742d-4535-8b2c-2f320cf01853 e7df1ef76ff54d0bef3ceee19ec70c45 {"aliquot_tag": "ALQ_2b1eea61", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.S7_L002_R2.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R2_001.fastq.gz 4029884985 FASTQ S7_L002_R2 unaligned CPTAC3 199d1d37-fa4e-4a5b-8cde-332a5846109a dded4c9b5ccb39d71083990455612cd5 {"aliquot_tag": "ALQ_2b1eea61", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.transcriptome.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.transcriptome.gdc_realn.bam 10975510004 BAM transcriptome harmonized CPTAC3 03d58888-13d7-4b30-aeaa-b986030f238d c15c853a756f1f4258e78dc5a33e56f7 {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01875.RNA-Seq.transcriptome.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.transcriptome.gdc_realn.bam 9987917604 BAM transcriptome harmonized CPTAC3 7c6da2ed-e9a4-4f3e-a909-d971090f89ae aa678ff8463baeec1097a2a9916d1b3e {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor"} -C3N-01875.RNA-Seq.transcriptome.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.transcriptome.gdc_realn.bam 7731666744 BAM transcriptome harmonized CPTAC3 3a05c6bb-b3a5-4d9f-89a2-dd3f73a2f146 911fc6f2e0c86f3dce1dc1fed1e8cb31 {"aliquot_tag": "ALQ_672b973", "gdc_sample_type": "Primary Tumor"} -C3N-01875.WGS.N C3N-01875 UCEC WGS blood_normal CPT0117430002 CPT0117430002.WholeGenome.RP-1303.bam 60481735695 BAM aligned CPTAC3 4e3ff215-4b85-4d4e-a78c-b79024191c94 4710288a4685eab36c9916af884a6f38 {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal"} -C3N-01875.WGS.N.hg38 C3N-01875 UCEC WGS blood_normal CPT0117430002 888e64a7-b440-45a5-8e81-1587f98e4053_wgs_gdc_realn.bam 87491529073 BAM harmonized CPTAC3 b96f7166-53a7-4c72-8be9-309fbbeaadf9 f4d4e41a30af033f1ddd74f884cb65ba {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal"} -C3N-01875.WGS.T C3N-01875 UCEC WGS tumor CPT0117370007 CPT0117370007.WholeGenome.RP-1303.bam 62104710329 BAM aligned CPTAC3 cab1ac54-aafd-4098-94fc-fbc2ae3a9757 a401a6078be2f81574ecafbfd8a77bae {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor"} -C3N-01875.WGS.T.hg38 C3N-01875 UCEC WGS tumor CPT0117370007 2cfe5b01-0998-4ee6-8544-7d88738aa6ae_wgs_gdc_realn.bam 92817498332 BAM harmonized CPTAC3 ae7e42fa-bf11-4b59-b8e4-5dad520a5362 ea0bb58c3deeb65eadc9ed88e7c64fac {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor"} -C3N-01875.WXS.N C3N-01875 UCEC WXS blood_normal CPT0117430002 CPT0117430002.WholeExome.RP-1303.bam 20149424604 BAM aligned CPTAC3 36390558-6f65-4195-beca-c3822e4487f9 380a2833aa49ae5d7f273cc846f41a60 {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal"} -C3N-01875.WXS.N.hg38 C3N-01875 UCEC WXS blood_normal CPT0117430002 888e64a7-b440-45a5-8e81-1587f98e4053_wxs_gdc_realn.bam 28077329226 BAM harmonized CPTAC3 eb562d60-7abb-4582-a3f0-d740b6c57876 9bed6969198d91686589c76f1b67b034 {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal"} -C3N-01875.WXS.T C3N-01875 UCEC WXS tumor CPT0117370007 CPT0117370007.WholeExome.RP-1303.bam 29491418766 BAM aligned CPTAC3 6968a110-9308-4906-b277-9abe881f739b 9fb6299c3768a82a349d28f96f4384d8 {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor"} -C3N-01875.WXS.T.hg38 C3N-01875 UCEC WXS tumor CPT0117370007 2cfe5b01-0998-4ee6-8544-7d88738aa6ae_wxs_gdc_realn.bam 40676633165 BAM harmonized CPTAC3 6f9ff065-a1d9-485e-b9d2-2169684c427c 81d28c7d34c915a45e5693ce3be2e7de {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor"} -C3N-01876.MethArray.Green.T C3N-01876 UCEC Methylation_Array tumor CPT0117440006 203220070082_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bf5be4e1-5cd3-4ab7-a7c9-392393986b00 1415db62843983eab7e86ad19f541900 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor"} -C3N-01876.MethArray.Red.T C3N-01876 UCEC Methylation_Array tumor CPT0117440006 203220070082_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 7dc2222a-722c-4ce1-8072-26c1bc9943f9 7769ea9bea91a896b19c6fff45ae1091 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor"} -C3N-01876.miRNA-Seq.A.hg38 C3N-01876 UCEC miRNA-Seq tissue_normal CPT0117460009 f58ecc0b-6321-41e1-ad1b-2cae4a16e5e9_mirnaseq_gdc_realn.bam 273521118 BAM harmonized CPTAC3 f96536fd-40de-43b2-b170-7e4e71bc3c12 f3e55749c67bfb3fd68114e118674fad {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.miRNA-Seq.S29_L005_R1.T C3N-01876 UCEC miRNA-Seq tumor CPT0117440009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L005_R1_001.unaln.bam 227248056 BAM S29_L005_R1 unaligned CPTAC3 27b2cae5-ee05-498b-a4f9-0d934433244b 900eb20519808e2e778afcbe8b0f0330 {"aliquot_tag": "ALQ_117c29ec", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01876.miRNA-Seq.S48_L003_R1.A C3N-01876 UCEC miRNA-Seq tissue_normal CPT0117460009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGGCA_S48_L003_R1_001.unaln.bam 236658792 BAM S48_L003_R1 unaligned CPTAC3 42cb7297-84e3-4124-b18c-4e5d98ec1d9b 16dd8f27939212845a652d2aaf10f982 {"aliquot_tag": "ALQ_6bbc7a8c", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.miRNA-Seq.T.hg38 C3N-01876 UCEC miRNA-Seq tumor CPT0117440009 9587e91c-fe4b-4b5f-88fe-0f1af6a44bbd_mirnaseq_gdc_realn.bam 259053010 BAM harmonized CPTAC3 64ac8905-f9cd-4cc4-ad3b-d9ae4312c593 5ca72f51998f0a74804894077bb2e175 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.chimeric.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.chimeric.gdc_realn.bam 54328805 BAM chimeric harmonized CPTAC3 edccdade-c525-4783-9b2d-bbece71ad7e0 360ee4fac35298973db47865d0ec6a9f {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.RNA-Seq.chimeric.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.chimeric.gdc_realn.bam 38211556 BAM chimeric harmonized CPTAC3 e49a721f-c601-4e86-bb57-3f3adba596c1 18309bba3bce3fa89879ac17037f0614 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.chimeric.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.chimeric.gdc_realn.bam 256223473 BAM chimeric harmonized CPTAC3 364d03dc-de1c-482b-97a7-573177866538 f9df5a199ab225ac30ff602664b414ac {"aliquot_tag": "ALQ_b9420712", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.genomic.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.genomic.gdc_realn.bam 9941484364 BAM genomic harmonized CPTAC3 9040f36b-2352-43ec-b8f6-22f34bbde5d5 1a30b4aa06978e9a2664abe5660225df {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.RNA-Seq.genomic.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.genomic.gdc_realn.bam 8220673375 BAM genomic harmonized CPTAC3 5234a6ae-cdfb-43a9-a512-ac6ea6083784 eb9cf0bf2470040e43227a0dcc5f5836 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.genomic.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.genomic.gdc_realn.bam 10650743750 BAM genomic harmonized CPTAC3 0a888fb1-3d13-4286-aea7-a34077785623 b2da410456797f6f1bf5ec3f05a2960c {"aliquot_tag": "ALQ_b9420712", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.S2_R1.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R1_001.fastq.gz 6637923585 FASTQ S2_R1 unaligned CPTAC3 1ce66ac7-2cdd-4aee-befe-e262128803b1 4b36c54f220fe1876db92c9b61fe1197 {"aliquot_tag": "ALQ_b9420712", "sample": "S2", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.S2_R2.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R2_001.fastq.gz 6846423470 FASTQ S2_R2 unaligned CPTAC3 716fd6c8-9549-4f0d-a110-414d775cfe3d f0e4845fa7021d1f3d57e0be06f1fa8a {"aliquot_tag": "ALQ_b9420712", "sample": "S2", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.S4_L001_R1.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4277362519 FASTQ S4_L001_R1 unaligned CPTAC3 e56a086a-9189-4798-9d29-b3972cb193f9 3e4dfb78ec6b64723c57916a73aa5a1c {"aliquot_tag": "ALQ_6bbc7a8c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.RNA-Seq.S4_L001_R2.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4757675547 FASTQ S4_L001_R2 unaligned CPTAC3 725a91e3-b8fd-4b89-b7b8-15091323cc5e 4ddaf4ebf9da700863c4daf816607419 {"aliquot_tag": "ALQ_6bbc7a8c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.RNA-Seq.S9_L003_R1.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3939341820 FASTQ S9_L003_R1 unaligned CPTAC3 7b9c1e27-ab2d-4916-b7cd-e65bf866383e db3f70f1ef648f4a7c523ddc55dcd62a {"aliquot_tag": "ALQ_117c29ec", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.S9_L003_R2.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4122695682 FASTQ S9_L003_R2 unaligned CPTAC3 9da87d3c-7add-44bd-a77d-73bffab555b0 f111a49a153d51ea2d0a65c0f2d3ddf2 {"aliquot_tag": "ALQ_117c29ec", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.transcriptome.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.transcriptome.gdc_realn.bam 11837074536 BAM transcriptome harmonized CPTAC3 93d32fc5-a06f-43f5-a673-3601dbe52213 bbd577eac06c74bc2bae1c777e199703 {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.RNA-Seq.transcriptome.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.transcriptome.gdc_realn.bam 11287050450 BAM transcriptome harmonized CPTAC3 f392a4ce-c23b-44bf-9bf1-ca7d56df6202 e4720259110cca9099c6c182014ce985 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor"} -C3N-01876.RNA-Seq.transcriptome.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.transcriptome.gdc_realn.bam 5165281066 BAM transcriptome harmonized CPTAC3 f6ff6f6f-45db-43fe-814c-5d1a643d522a c1b0ba50134bf87f551f048b0d16597c {"aliquot_tag": "ALQ_b9420712", "gdc_sample_type": "Primary Tumor"} -C3N-01876.WGS.A C3N-01876 UCEC WGS tissue_normal CPT0117460006 CPT0117460006.WholeGenome.RP-1303.bam 62897242073 BAM aligned CPTAC3 3f605f64-302a-40ad-a336-498e82501ca6 1457f978a63e8e6d815a5f9932ae23ff {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.WGS.A.hg38 C3N-01876 UCEC WGS tissue_normal CPT0117460006 436d887f-93f8-48b7-9076-4575d4400f78_wgs_gdc_realn.bam 92915318396 BAM harmonized CPTAC3 50f6619f-28af-4469-90a7-b955893ee01e 4838111137b751d23015103cdd48e753 {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.WGS.N C3N-01876 UCEC WGS blood_normal CPT0117500002 CPT0117500002.WholeGenome.RP-1303.bam 63181255926 BAM aligned CPTAC3 b066ca2f-eb5e-4aa8-a4f1-70c94e100c06 74db40e5d4f63fe6d8001769bf9fdc81 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal"} -C3N-01876.WGS.N.hg38 C3N-01876 UCEC WGS blood_normal CPT0117500002 8e488837-ed32-480e-ad60-a30ffd48551f_wgs_gdc_realn.bam 92930198563 BAM harmonized CPTAC3 cbcce567-27d9-4867-8520-647199386a37 700cea6f4ca1f7abf41a113feee64437 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal"} -C3N-01876.WGS.T C3N-01876 UCEC WGS tumor CPT0117440006 CPT0117440006.WholeGenome.RP-1303.bam 72187193873 BAM aligned CPTAC3 c0c47210-12ac-424d-8af3-d819a809f369 b8661733dc34925f4ad418ff29c7f7f2 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor"} -C3N-01876.WGS.T.hg38 C3N-01876 UCEC WGS tumor CPT0117440006 1bfc6f87-acc0-45ab-b3b2-3228ead244d3_wgs_gdc_realn.bam 107473105748 BAM harmonized CPTAC3 0b8acafd-19fb-469d-8fd8-3e48efe05453 b023414a6cb4d6e1921cb4f99cef37a7 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor"} -C3N-01876.WXS.A C3N-01876 UCEC WXS tissue_normal CPT0117460006 CPT0117460006.WholeExome.RP-1303.bam 23978136372 BAM aligned CPTAC3 21b1525e-18ba-4bed-9995-4280944cd6af c6e2d9030c45a6381256e0092a6cc887 {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.WXS.A.hg38 C3N-01876 UCEC WXS tissue_normal CPT0117460006 436d887f-93f8-48b7-9076-4575d4400f78_wxs_gdc_realn.bam 33417715513 BAM harmonized CPTAC3 20a267a8-c3a8-4c49-bf0d-647da85f7755 e8438b2ad1ffd152b549e1f2642ab9ac {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01876.WXS.N C3N-01876 UCEC WXS blood_normal CPT0117500002 CPT0117500002.WholeExome.RP-1303.bam 31164004720 BAM aligned CPTAC3 199cbc6c-6acc-4e45-a5f7-96abaa94d4b9 9f777a730daed5335b336d83353ce1b9 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal"} -C3N-01876.WXS.N.hg38 C3N-01876 UCEC WXS blood_normal CPT0117500002 8e488837-ed32-480e-ad60-a30ffd48551f_wxs_gdc_realn.bam 42537400811 BAM harmonized CPTAC3 4f647e68-2385-48a1-a5d8-1b1c252aac61 644dac4f11361b131e1321482b5b1f85 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal"} -C3N-01876.WXS.T C3N-01876 UCEC WXS tumor CPT0117440006 CPT0117440006.WholeExome.RP-1303.bam 23612896426 BAM aligned CPTAC3 b055abad-ca6f-4fcf-a9eb-4c6bab439721 aaea4f6cf92567622a9c729fa17937ba {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor"} -C3N-01876.WXS.T.hg38 C3N-01876 UCEC WXS tumor CPT0117440006 1bfc6f87-acc0-45ab-b3b2-3228ead244d3_wxs_gdc_realn.bam 32778544828 BAM harmonized CPTAC3 31392433-4aab-44a6-8da6-02dde2054bf5 84d8f4a8ce17fdde815616e62369c0db {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor"} -C3N-01877.MethArray.Green.T C3N-01877 UCEC Methylation_Array tumor CPT0117510006 203219720203_R02C01_Grn.idat 13676219 IDAT Green NA CPTAC3 6f8d9669-e5ff-4fec-aff6-7360b94df87c c4726e6da28c41cf4678faa47f4c3e78 {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor"} -C3N-01877.MethArray.Red.T C3N-01877 UCEC Methylation_Array tumor CPT0117510006 203219720203_R02C01_Red.idat 13676219 IDAT Red NA CPTAC3 313b17eb-1ab2-40e1-8d19-fbf2111ed360 ec4e4c7a3256ae932bcf809f43b0f92d {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor"} -C3N-01877.miRNA-Seq.S30_L005_R1.T C3N-01877 UCEC miRNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACCGG_S30_L005_R1_001.unaln.bam 215872030 BAM S30_L005_R1 unaligned CPTAC3 935ffb3d-90af-4224-b02a-c4faddb9e6ce a44ac35c22077e3c272f05df4bb9d0e7 {"aliquot_tag": "ALQ_12c07539", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01877.miRNA-Seq.T.hg38 C3N-01877 UCEC miRNA-Seq tumor CPT0117510009 74b3f75b-f213-43af-aed8-5879e75f97d7_mirnaseq_gdc_realn.bam 236898211 BAM harmonized CPTAC3 ec185926-9180-4a04-ae30-35606b06fb8e 2127316882ca3fd0bcd0bc1d1700b337 {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.chimeric.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.chimeric.gdc_realn.bam 39346966 BAM chimeric harmonized CPTAC3 f7a7cc84-ea1a-4a18-bbe9-7a8751a0ee63 7e7efb733d7e4108f52c3729b070117a {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.chimeric.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.chimeric.gdc_realn.bam 407652741 BAM chimeric harmonized CPTAC3 c72b1118-ba29-4e07-9a1b-17c008e5f508 0c048db5531ca2dc1e232b8453ce4074 {"aliquot_tag": "ALQ_7f0eb6c6", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.genomic.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.genomic.gdc_realn.bam 9060736368 BAM genomic harmonized CPTAC3 be67cf7b-f9a8-4069-999e-ae1feb361d22 bd62c671e65b41a766adcb177dc8d7e6 {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.genomic.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.genomic.gdc_realn.bam 18881674449 BAM genomic harmonized CPTAC3 d0f622a6-1d04-4bd5-8664-17cb9559cacf ec20d4d097b26ab8fdcf644a0b4b761a {"aliquot_tag": "ALQ_7f0eb6c6", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.S11_L003_R1.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4141895071 FASTQ S11_L003_R1 unaligned CPTAC3 a6a46db0-9e5e-4ad3-beaa-84d438688671 03007bc049981b494da964c1511ab6ee {"aliquot_tag": "ALQ_12c07539", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.S11_L003_R2.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4392376489 FASTQ S11_L003_R2 unaligned CPTAC3 a6e9b1bc-3a45-4ca0-a3f2-c88d78fd2561 1db6ef42873bedbc417b05ff2c772559 {"aliquot_tag": "ALQ_12c07539", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.S66_R1.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R1_001.fastq.gz 13729024495 FASTQ S66_R1 unaligned CPTAC3 de1fe3bb-8cec-4d24-a7f2-691958e09c1c 45e283144440bcbb1231de6c5d36c561 {"aliquot_tag": "ALQ_7f0eb6c6", "sample": "S66", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.S66_R2.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R2_001.fastq.gz 14278651526 FASTQ S66_R2 unaligned CPTAC3 e1ba06b4-42e6-4a08-a0d3-007e9613ffe5 8ea5c229a9cb1633c8ec02c9194d73ff {"aliquot_tag": "ALQ_7f0eb6c6", "sample": "S66", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.transcriptome.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.transcriptome.gdc_realn.bam 10117235419 BAM transcriptome harmonized CPTAC3 d8f1d527-8c10-46e2-9cf5-8c19dbe4b7c0 eccd9f596e3a9e57ace5b422f302eeae {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor"} -C3N-01877.RNA-Seq.transcriptome.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.transcriptome.gdc_realn.bam 11438376822 BAM transcriptome harmonized CPTAC3 b761bef1-1fa9-4e3b-8d29-646debe77423 c7b7adb01f88968f680366eeedcdf176 {"aliquot_tag": "ALQ_7f0eb6c6", "gdc_sample_type": "Primary Tumor"} -C3N-01877.WGS.N C3N-01877 UCEC WGS blood_normal CPT0117550002 CPT0117550002.WholeGenome.RP-1303.bam 51574593696 BAM aligned CPTAC3 f8134fb4-b004-4fc6-a48c-5e9431bb419b d6643cb6db1197f785abb13d047be58b {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01877.WGS.N.hg38 C3N-01877 UCEC WGS blood_normal CPT0117550002 f7c5ef71-dce5-4eb0-867d-19bafd6e518b_wgs_gdc_realn.bam 77237598235 BAM harmonized CPTAC3 30b48662-8f18-4da3-832c-559fb6f6766e 0776c060ba1fdb35c5cdb3666b60b920 {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01877.WGS.T C3N-01877 UCEC WGS tumor CPT0117510006 CPT0117510006.WholeGenome.RP-1303.bam 59748819595 BAM aligned CPTAC3 a9b42c8d-49a0-4ea0-948b-758c66d3db5a e49b4aad2f88137a1ca74c59029f2c1d {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor"} -C3N-01877.WGS.T.hg38 C3N-01877 UCEC WGS tumor CPT0117510006 0f99325d-7914-4ea6-9f57-a7b420a03487_wgs_gdc_realn.bam 88882038796 BAM harmonized CPTAC3 0043b2ca-5257-431e-b4c3-f3598a48f2ba 7b6b0780c9e1f2f91d94b2fdae49c06d {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor"} -C3N-01877.WXS.N C3N-01877 UCEC WXS blood_normal CPT0117550002 CPT0117550002.WholeExome.RP-1303.bam 27666627418 BAM aligned CPTAC3 275d3c26-67ee-4f60-baf5-8f705d52666c 05a78976ffb988b04d0a59f9ea21e152 {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01877.WXS.N.hg38 C3N-01877 UCEC WXS blood_normal CPT0117550002 f7c5ef71-dce5-4eb0-867d-19bafd6e518b_wxs_gdc_realn.bam 37988678213 BAM harmonized CPTAC3 56d93bac-c390-438b-9b5e-ce6434e04cc7 7a23265c0dd0a4d993424fdad34d63e4 {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01877.WXS.T C3N-01877 UCEC WXS tumor CPT0117510006 CPT0117510006.WholeExome.RP-1303.bam 19218466898 BAM aligned CPTAC3 bf242392-4d9c-43f6-ab6d-20b7010196ea 85295f08288eecb0af7f27bae1ce8d8c {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor"} -C3N-01877.WXS.T.hg38 C3N-01877 UCEC WXS tumor CPT0117510006 0f99325d-7914-4ea6-9f57-a7b420a03487_wxs_gdc_realn.bam 26938454301 BAM harmonized CPTAC3 9fcc573d-6f53-468a-a0f0-d9f14d29b3d6 4d3121a40f4c397244e6e20cdd518e85 {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor"} -C3N-01878.MethArray.Green.T C3N-01878 UCEC Methylation_Array tumor CPT0117560006 203219750071_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ecb986f0-2fe4-4165-b643-f5c58a7b78d0 6025869bea325a49b5c9e39a401b1f22 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor"} -C3N-01878.MethArray.Red.T C3N-01878 UCEC Methylation_Array tumor CPT0117560006 203219750071_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ea7c085-245f-49c0-9a4c-ab94fc44c9af 93fd9ad2f0cf7077411c1c640fff4fd9 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor"} -C3N-01878.miRNA-Seq.S31_L005_R1.T C3N-01878 UCEC miRNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACGAT_S31_L005_R1_001.unaln.bam 192812882 BAM S31_L005_R1 unaligned CPTAC3 1fbc2137-2b26-43c2-9b92-0652df74bee3 a66a171f2242380cbaaa119c8c644104 {"aliquot_tag": "ALQ_a0e0a929", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01878.miRNA-Seq.T.hg38 C3N-01878 UCEC miRNA-Seq tumor CPT0117560009 487e2f7b-ea40-40af-bb33-a4a1dc227321_mirnaseq_gdc_realn.bam 212567175 BAM harmonized CPTAC3 0c55cf48-eab1-4fb2-bb78-aa90a9446ff4 952989cf258fd329096e6f94a77b8c60 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.chimeric.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.chimeric.gdc_realn.bam 44772920 BAM chimeric harmonized CPTAC3 a47ceadb-fe73-4c36-90bf-b97770147c8e eb97d972f09a2778adffd94b48d783c1 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.chimeric.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.chimeric.gdc_realn.bam 72529338 BAM chimeric harmonized CPTAC3 0f447363-8f14-45a7-b10b-2bb49f26c6b7 57bf2b766309e697ff13d4355836c535 {"aliquot_tag": "ALQ_5cee5a6", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.genomic.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.genomic.gdc_realn.bam 8418554102 BAM genomic harmonized CPTAC3 a9424516-faf2-4883-b093-88a9205f4ad6 b7ffb4df9d428d8b418e11759a07a420 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.genomic.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.genomic.gdc_realn.bam 4670799164 BAM genomic harmonized CPTAC3 adf973e4-c075-4265-b8ff-1b7641c3c4b1 7dd0b5a470e04403dc0da6c1f02cbe6d {"aliquot_tag": "ALQ_5cee5a6", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.S10_L003_R1.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3839235837 FASTQ S10_L003_R1 unaligned CPTAC3 970fa09c-f2f0-4c05-b6b4-024d45e36fd0 18e058a95bb0e964ac739c71787a711c {"aliquot_tag": "ALQ_a0e0a929", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.S10_L003_R2.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R2_001.fastq.gz 4054585876 FASTQ S10_L003_R2 unaligned CPTAC3 e3140a45-e48e-4db5-b8b7-efc0a547188b 2ee32ef39ff47d815e77b39d601e2432 {"aliquot_tag": "ALQ_a0e0a929", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.S9_R1.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R1_001.fastq.gz 3153382014 FASTQ S9_R1 unaligned CPTAC3 84fbf577-cacd-4a26-84aa-6c34c82ef7ae 665748ae98bd5c2a8246dc1f7446e036 {"aliquot_tag": "ALQ_5cee5a6", "sample": "S9", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.S9_R2.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R2_001.fastq.gz 3277664387 FASTQ S9_R2 unaligned CPTAC3 1727792c-e532-47f1-8cab-b79e64ef6016 987f230c786c696c4a6a44167184dc35 {"aliquot_tag": "ALQ_5cee5a6", "sample": "S9", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.transcriptome.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.transcriptome.gdc_realn.bam 11313160249 BAM transcriptome harmonized CPTAC3 5472ed40-17f2-489c-9383-d96b91ea3ab8 7814273a94af9487b8268deaa958de35 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor"} -C3N-01878.RNA-Seq.transcriptome.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.transcriptome.gdc_realn.bam 2616273426 BAM transcriptome harmonized CPTAC3 5780a347-6932-45f9-931e-a0853ec933b8 e0152b67668254d1299c6287bd4ddadd {"aliquot_tag": "ALQ_5cee5a6", "gdc_sample_type": "Primary Tumor"} -C3N-01878.WGS.N C3N-01878 UCEC WGS blood_normal CPT0117620002 CPT0117620002.WholeGenome.RP-1303.bam 56075030402 BAM aligned CPTAC3 cccd727e-a88a-4745-8206-49c022817f18 e77a9a7d750a4c51d0b2adccf018be1d {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal"} -C3N-01878.WGS.N.hg38 C3N-01878 UCEC WGS blood_normal CPT0117620002 889965f5-7383-44fa-b367-ab31381e72c0_wgs_gdc_realn.bam 80502872579 BAM harmonized CPTAC3 0963c3a8-985f-4f98-bafd-271cac96c249 5775f129a2a14bd9a013ba732346a46c {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal"} -C3N-01878.WGS.T C3N-01878 UCEC WGS tumor CPT0117560006 CPT0117560006.WholeGenome.RP-1303.bam 60629448902 BAM aligned CPTAC3 cbaba078-f10d-4804-9e59-1a79711c55ab 9e728b66a2eda6677400684b2ef28a4d {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor"} -C3N-01878.WGS.T.hg38 C3N-01878 UCEC WGS tumor CPT0117560006 5cf2f8af-40e6-4465-9b58-b6921ff700af_wgs_gdc_realn.bam 89356823319 BAM harmonized CPTAC3 7e9370b1-5f4f-411f-82d4-595e0b53a08b 0a6e44df4bab983f5ae887fcc4f19858 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor"} -C3N-01878.WXS.N C3N-01878 UCEC WXS blood_normal CPT0117620002 CPT0117620002.WholeExome.RP-1303.bam 18946741369 BAM aligned CPTAC3 9588353e-537b-4b23-a6a8-bb5f4ad918e6 610ed8b01395ac93b068b3296d42a814 {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal"} -C3N-01878.WXS.N.hg38 C3N-01878 UCEC WXS blood_normal CPT0117620002 889965f5-7383-44fa-b367-ab31381e72c0_wxs_gdc_realn.bam 26737564390 BAM harmonized CPTAC3 fad3393e-1c86-4f28-88a3-8e63df0050c4 f78081aae9bca0895c3bbb3b44b60277 {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal"} -C3N-01878.WXS.T C3N-01878 UCEC WXS tumor CPT0117560006 CPT0117560006.WholeExome.RP-1303.bam 19668274680 BAM aligned CPTAC3 1aef99a2-8452-4650-b52a-899c07a5000f 865d715c899a7ac84ab0ff2c71a0788e {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor"} -C3N-01878.WXS.T.hg38 C3N-01878 UCEC WXS tumor CPT0117560006 5cf2f8af-40e6-4465-9b58-b6921ff700af_wxs_gdc_realn.bam 26716326912 BAM harmonized CPTAC3 36863ffa-3f7f-42c7-9585-680485ab97f8 19ea9a83753c201142a0d0e67dce29a0 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor"} -C3N-01879.MethArray.Green.T C3N-01879 UCEC Methylation_Array tumor CPT0226860006 203561620052_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0283d9ff-61a8-4a12-9c32-bab9fb0b59cc 77bfb68551021165386eeee24a093848 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor"} -C3N-01879.MethArray.Red.T C3N-01879 UCEC Methylation_Array tumor CPT0226860006 203561620052_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 92da5234-bed5-4771-8006-6b86a22d6c5d 9f16be437408e335db0c62cbe6c807d1 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor"} -C3N-01879.miRNA-Seq.S34_L004_R1.T C3N-01879 UCEC miRNA-Seq tumor CPT0226860009 190508_UNC31-K00269_0215_BH7FYKBBXY_CATGGC_S34_L004_R1_001.unaln.bam 259536011 BAM S34_L004_R1 unaligned CPTAC3 3050e2bb-8216-4e5e-a485-2c0647173119 3d648932d81122e70744ab65596b71aa {"aliquot_tag": "ALQ_d0b8a65", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01879.miRNA-Seq.T.hg38 C3N-01879 UCEC miRNA-Seq tumor CPT0226860009 b01e86d3-3ce3-4622-be24-ba65064c21c6_mirnaseq_gdc_realn.bam 304432949 BAM harmonized CPTAC3 cd1c5194-07e2-47c5-8f4f-ad56671e5cd1 fda5b314e613996bd70350952fce67cd {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor"} -C3N-01879.RNA-Seq.chimeric.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.chimeric.gdc_realn.bam 35738926 BAM chimeric harmonized CPTAC3 0fed57a0-908a-42b9-bc76-3e4c9a4a6214 7318883fc36c03cf82bd46b7835c113c {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor"} -C3N-01879.RNA-Seq.genomic.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.genomic.gdc_realn.bam 8687876639 BAM genomic harmonized CPTAC3 2a4212d0-90d4-472a-a548-ed28ff46f11c 36e34768494dd98e01494553605f3b30 {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor"} -C3N-01879.RNA-Seq.S6_L002_R1.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R1_001.fastq.gz 4038180157 FASTQ S6_L002_R1 unaligned CPTAC3 2a468038-2b4b-4622-8cc8-e221b770a9b5 a7d12f29f42f0b275df94c3c255d3b7f {"aliquot_tag": "ALQ_d0b8a65", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01879.RNA-Seq.S6_L002_R2.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R2_001.fastq.gz 4662253514 FASTQ S6_L002_R2 unaligned CPTAC3 aa538b39-8eb2-4c6f-8613-5adfbb0219a2 d31417e57007e5790d6e84103284097e {"aliquot_tag": "ALQ_d0b8a65", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01879.RNA-Seq.transcriptome.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.transcriptome.gdc_realn.bam 13376673290 BAM transcriptome harmonized CPTAC3 70936f76-371d-4151-8ed0-a4e79ec7114b 216f978d83f27a3f921c3429017e392f {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor"} -C3N-01879.WGS.N C3N-01879 UCEC WGS blood_normal CPT0226920002 CPT0226920002.WholeGenome.RP-1303.bam 60921275205 BAM aligned CPTAC3 45d8264c-8506-44c1-ad35-7e266defce5d 8b8027affc7e3e97121c87111c1b8ad1 {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal"} -C3N-01879.WGS.N.hg38 C3N-01879 UCEC WGS blood_normal CPT0226920002 848de4ff-8a75-413b-a0c2-da83827007cb_wgs_gdc_realn.bam 88924500106 BAM harmonized CPTAC3 390a1350-4bef-48d0-9078-9a1286b6e9c7 8cd70f6a0ae264cb93c07b0ddb42a3b1 {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal"} -C3N-01879.WGS.T C3N-01879 UCEC WGS tumor CPT0226860006 CPT0226860006.WholeGenome.RP-1303.bam 73422150794 BAM aligned CPTAC3 a8896b43-f07d-44c2-9121-14bd9f9220da 3fb9a01140f0afb685610def7d79178d {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor"} -C3N-01879.WGS.T.hg38 C3N-01879 UCEC WGS tumor CPT0226860006 17897397-8ef1-4b7e-a4be-62724d409003_wgs_gdc_realn.bam 107595501648 BAM harmonized CPTAC3 5fed5139-560c-4dbc-9672-979512d6139f 061a74b538aac7ce2d75e547256da9d4 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor"} -C3N-01879.WXS.N C3N-01879 UCEC WXS blood_normal CPT0226920002 CPT0226920002.WholeExome.RP-1303.bam 24823569143 BAM aligned CPTAC3 921f1e4e-afd2-427e-a747-fcf2cbec9316 5f5e1815944a474f0aa9174f3fffceea {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal"} -C3N-01879.WXS.N.hg38 C3N-01879 UCEC WXS blood_normal CPT0226920002 848de4ff-8a75-413b-a0c2-da83827007cb_wxs_gdc_realn.bam 33616257498 BAM harmonized CPTAC3 a8ed9897-44f6-43b7-8b65-d2aa2479fe40 7199a209a002a16549cce1c7744516a9 {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal"} -C3N-01879.WXS.T C3N-01879 UCEC WXS tumor CPT0226860006 CPT0226860006.WholeExome.RP-1303.bam 29225394152 BAM aligned CPTAC3 6202220b-ed68-4ca2-b7d9-24d1addb53e0 ccb8df4e9a62c84faae0874cd00ed556 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor"} -C3N-01879.WXS.T.hg38 C3N-01879 UCEC WXS tumor CPT0226860006 17897397-8ef1-4b7e-a4be-62724d409003_wxs_gdc_realn.bam 42273615193 BAM harmonized CPTAC3 bcc27383-e684-4967-933c-995e65a2d538 a28f09ed907181ab8ec4fdefce1531c4 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor"} -C3N-01880.MethArray.Green.T C3N-01880 UCEC Methylation_Array tumor CPT0244510006 203561620085_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a90b8107-b528-49a2-9d7b-65359df56cc0 6f8d7ce377070463f86da656582495a4 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor"} -C3N-01880.MethArray.Red.T C3N-01880 UCEC Methylation_Array tumor CPT0244510006 203561620085_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 49ff4995-61e8-440a-87a6-415552babd23 6fa91e1b6fbc23c6e29402f9a1609f68 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor"} -C3N-01880.miRNA-Seq.S4_L001_R1.T C3N-01880 UCEC miRNA-Seq tumor CPT0244510009 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L001_R1_001.unaln.bam 259038020 BAM S4_L001_R1 unaligned CPTAC3 d75b26de-6199-4d0f-b906-c82d03b702ff aa449a01b93abdabc1b16a37bce96505 {"aliquot_tag": "ALQ_52455d05", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01880.miRNA-Seq.T.hg38 C3N-01880 UCEC miRNA-Seq tumor CPT0244510009 e29c11af-cc00-49a4-8d62-f4921e79a64f_mirnaseq_gdc_realn.bam 295028008 BAM harmonized CPTAC3 cac99c4c-cb62-44db-8d2b-3004b7e88352 14574f5dda669b31c36b6441f278668d {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.chimeric.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.chimeric.gdc_realn.bam 34280970 BAM chimeric harmonized CPTAC3 0baca6a2-ac75-4c05-a874-15fc8cdf7702 d705a72fbe168f0e5f386085ec77660b {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.chimeric.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.chimeric.gdc_realn.bam 263293699 BAM chimeric harmonized CPTAC3 7098733c-8601-4e45-a8ce-f1e58f6558f9 b2087e837e982025e1c40eb24aacde4b {"aliquot_tag": "ALQ_c4faedd8", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.genomic.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.genomic.gdc_realn.bam 8697369420 BAM genomic harmonized CPTAC3 dee514f8-542a-42b0-941a-7edbba871fc1 cbe1965659111af8c5dacf9df77f7433 {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.genomic.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.genomic.gdc_realn.bam 10260283530 BAM genomic harmonized CPTAC3 a021196c-c20c-47df-85a8-c1bc05e98f91 91f04b41f04747f5c4aaaaa6f915d7ae {"aliquot_tag": "ALQ_c4faedd8", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.S14_L004_R1.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R1_001.fastq.gz 4203382401 FASTQ S14_L004_R1 unaligned CPTAC3 d6857cce-e044-4fe0-b44a-82eba01251a8 7421c9d1da93eb256a1a02e00fc39dfc {"aliquot_tag": "ALQ_52455d05", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.S14_L004_R2.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R2_001.fastq.gz 4611168749 FASTQ S14_L004_R2 unaligned CPTAC3 88c11e88-92c6-4c9f-9cbe-7e24d82c1278 2801ffc7b48bc7eda0c043b199dfa521 {"aliquot_tag": "ALQ_52455d05", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.S67_R1.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R1_001.fastq.gz 6201440903 FASTQ S67_R1 unaligned CPTAC3 2f306b3c-50a6-46b1-9425-7b9712cba72f 2ff3993448a4e4beee0da9c3c9f99995 {"aliquot_tag": "ALQ_c4faedd8", "sample": "S67", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.S67_R2.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R2_001.fastq.gz 6412025741 FASTQ S67_R2 unaligned CPTAC3 e316a345-3165-42fc-ace6-97793571cbb9 911a5cd180a992b52fbca139ae5e942f {"aliquot_tag": "ALQ_c4faedd8", "sample": "S67", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.transcriptome.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.transcriptome.gdc_realn.bam 11254460927 BAM transcriptome harmonized CPTAC3 1db7a820-a44a-4ea6-b5a3-55d69bbb96b4 dbe3446fb43c19748545487c6673ad67 {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor"} -C3N-01880.RNA-Seq.transcriptome.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.transcriptome.gdc_realn.bam 4425805828 BAM transcriptome harmonized CPTAC3 6e8a6f85-a97d-4665-9571-8fca8d6fd9c7 e32883f9eab7a11eee0d66b27d4bc9bb {"aliquot_tag": "ALQ_c4faedd8", "gdc_sample_type": "Primary Tumor"} -C3N-01880.WGS.N C3N-01880 UCEC WGS blood_normal CPT0244560002 CPT0244560002.WholeGenome.RP-1303.bam 80253521838 BAM aligned CPTAC3 cd597b48-4d5b-4915-88b4-73515b19849f 9cde4b79757cc15330dd8c4225339fe2 {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01880.WGS.N.hg38 C3N-01880 UCEC WGS blood_normal CPT0244560002 1f1edace-64cf-49f2-b523-58f4a1ff2a04_wgs_gdc_realn.bam 117146846013 BAM harmonized CPTAC3 96d2e55b-836f-4013-b867-4703e7a2030a f4ce680aa21ec9405283293bcb9d6811 {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01880.WGS.T C3N-01880 UCEC WGS tumor CPT0244510006 CPT0244510006.WholeGenome.RP-1303.bam 64775323574 BAM aligned CPTAC3 3d3e4424-a74c-45c6-adcb-3fb6506bbe08 dec1737320f2835eb004000e6b29543b {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor"} -C3N-01880.WGS.T.hg38 C3N-01880 UCEC WGS tumor CPT0244510006 e9c2219d-e9bc-4ccd-a5f1-34d361863681_wgs_gdc_realn.bam 94574287544 BAM harmonized CPTAC3 6cf4564e-807e-47ee-a688-23c337bde369 464d42a6464d4e32da1829a98869ec61 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor"} -C3N-01880.WXS.N C3N-01880 UCEC WXS blood_normal CPT0244560002 CPT0244560002.WholeExome.RP-1303.bam 24970242000 BAM aligned CPTAC3 03041c8f-94c6-4e18-8820-75b961158036 205320698416cafcc55c00de94c667fa {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01880.WXS.N.hg38 C3N-01880 UCEC WXS blood_normal CPT0244560002 1f1edace-64cf-49f2-b523-58f4a1ff2a04_wxs_gdc_realn.bam 33842256834 BAM harmonized CPTAC3 1a736b16-cc90-4dec-8910-d9f06356bd35 08aef304d3a63f1682f6603d2f446aad {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal"} -C3N-01880.WXS.T C3N-01880 UCEC WXS tumor CPT0244510006 CPT0244510006.WholeExome.RP-1303.bam 23210298839 BAM aligned CPTAC3 ecdc4f81-9508-4fe7-9c9d-9cb532a73b10 004e129bb22ecf21917884268aef1607 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor"} -C3N-01880.WXS.T.hg38 C3N-01880 UCEC WXS tumor CPT0244510006 e9c2219d-e9bc-4ccd-a5f1-34d361863681_wxs_gdc_realn.bam 32771880228 BAM harmonized CPTAC3 9577e58a-e24c-4b96-8965-868649eb595c 1bd76e783f1661ff1b1d8c91a0536ee2 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor"} -C3N-01892.MethArray.Green.A C3N-01892 LSCC Methylation_Array tissue_normal CPT0126400006 203219670019_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 e82a30ee-de57-4226-b1f3-1ddfdc25bbcc cf5653875bbff3eaed5a5b23914f3ce9 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.MethArray.Green.T C3N-01892 LSCC Methylation_Array tumor CPT0126390006 203220070156_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 74627b90-08ef-43b4-8e11-3a5607b624cd 299a6b6e6a977bf06e834b1cf7b8d80e {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor"} -C3N-01892.MethArray.Red.A C3N-01892 LSCC Methylation_Array tissue_normal CPT0126400006 203219670019_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 8f3df4ed-63a4-480d-a2c4-a69bca98a7e5 f850892020a730c306d045052348ac3b {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.MethArray.Red.T C3N-01892 LSCC Methylation_Array tumor CPT0126390006 203220070156_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 e0cea229-868d-4101-92d1-0ddac5994622 952eadef25fc1f1434d5abe969202398 {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor"} -C3N-01892.miRNA-Seq.A.hg38 C3N-01892 LSCC miRNA-Seq tissue_normal CPT0126400009 2890ae73-1326-4bc0-9475-93a89d6da273_mirnaseq_gdc_realn.bam 265996832 BAM harmonized CPTAC3 14df333f-de64-42f8-afbc-81f6e5c40bdb 741ed769ff137cf9f5a846e3aea84093 {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.miRNA-Seq.S1_L003_R1.T C3N-01892 LSCC miRNA-Seq tumor CPT0126390009 181219_UNC31-K00269_0173_BHYGJJBBXX_ATCACG_S1_L003_R1_001.unaln.bam 196622786 BAM S1_L003_R1 unaligned CPTAC3 ffb578f3-5053-4ff9-9916-ccc80ff33f9f 37d34d407dd755eb4e57abd2567d8984 {"aliquot_tag": "ALQ_dc11d1b2", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01892.miRNA-Seq.S40_L002_R1.A C3N-01892 LSCC miRNA-Seq tissue_normal CPT0126400009 181219_UNC31-K00269_0173_BHYGJJBBXX_GACGAC_S40_L002_R1_001.unaln.bam 242957989 BAM S40_L002_R1 unaligned CPTAC3 2055770c-2922-4985-8ca4-4d7cadcbc0c9 47daf74f16ca4ce9650d2ee1aecc1f53 {"aliquot_tag": "ALQ_cc04837b", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.miRNA-Seq.T.hg38 C3N-01892 LSCC miRNA-Seq tumor CPT0126390009 4cd0a6f5-e248-4fe5-b25e-176afc6720f7_mirnaseq_gdc_realn.bam 217451505 BAM harmonized CPTAC3 5b2fb840-29db-4b49-b952-f978a98942a1 ab86400b61c11d5264c7bb1adeccfc5d {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor"} -C3N-01892.RNA-Seq.chimeric.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.chimeric.gdc_realn.bam 29377706 BAM chimeric harmonized CPTAC3 b3c20470-f3b6-4227-a2c8-a9c7e4854a90 a316e8eae8328fc32851d527ad1732ec {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.RNA-Seq.chimeric.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.chimeric.gdc_realn.bam 133399353 BAM chimeric harmonized CPTAC3 b1d908b8-b684-4e52-9f06-b27f409f932a 5a1de12a6f9f56377ee361e4a82f6302 {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor"} -C3N-01892.RNA-Seq.genomic.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.genomic.gdc_realn.bam 8753697480 BAM genomic harmonized CPTAC3 2effb7dc-686e-4fd2-93d2-9f61b4f865e2 d35c1bb7221d2f12a3cd2badc72d48a2 {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.RNA-Seq.genomic.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.genomic.gdc_realn.bam 9948339463 BAM genomic harmonized CPTAC3 ad18d199-64a6-40d9-ac24-ac43f902769b fc05f4bc556ef7c7a1f098a26fc902ad {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor"} -C3N-01892.RNA-Seq.S1_L001_R1.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R1_001.fastq.gz 4383784537 FASTQ S1_L001_R1 unaligned CPTAC3 1c078fa3-dc53-4544-aee0-27967d868da1 ecbe35263025a218b7d67ee1189d341b {"aliquot_tag": "ALQ_dc11d1b2", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01892.RNA-Seq.S1_L001_R2.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R2_001.fastq.gz 4615445263 FASTQ S1_L001_R2 unaligned CPTAC3 07c9c548-d6cb-4061-a8ae-e38fb4153d93 acfb591af56bd5f0d169f5dda79c2882 {"aliquot_tag": "ALQ_dc11d1b2", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01892.RNA-Seq.S3_L007_R1.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3975936000 FASTQ S3_L007_R1 unaligned CPTAC3 85c2ee4c-aaad-4171-bfc7-92090c09a5e9 b91f3bfaa9c3b5c66dd243ac398863e9 {"aliquot_tag": "ALQ_cc04837b", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.RNA-Seq.S3_L007_R2.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4111613314 FASTQ S3_L007_R2 unaligned CPTAC3 68ec7002-bf61-4f73-87be-d9ac22afc871 682cc9002f2312848f51a7704e09fdb9 {"aliquot_tag": "ALQ_cc04837b", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.RNA-Seq.transcriptome.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.transcriptome.gdc_realn.bam 11033042745 BAM transcriptome harmonized CPTAC3 0686eb2f-04c4-4f9c-9ced-96fd34ab6d60 bdb3161f38ea51be62739cc2a5c43018 {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.RNA-Seq.transcriptome.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.transcriptome.gdc_realn.bam 11767527283 BAM transcriptome harmonized CPTAC3 48d68d4e-5c9b-4f34-9ed6-1eedfb6e4b31 4f4f10bf48cde901062f823bcecdb639 {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor"} -C3N-01892.WGS.A C3N-01892 LSCC WGS tissue_normal CPT0126400006 CPT0126400006.WholeGenome.RP-1303.bam 59921388930 BAM aligned CPTAC3 60c11bdf-7455-4f50-ad2b-d7a6d2aa4565 fe3a7ca527131b1ec258d04bb0514396 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.WGS.A.hg38 C3N-01892 LSCC WGS tissue_normal CPT0126400006 e9434614-c14c-49e8-9440-4ba994f842e7_wgs_gdc_realn.bam 87408260885 BAM harmonized CPTAC3 816d2725-b6e6-4a0a-8206-c6b07b77b0ac 87069921f19e9c3c1c1b592ea35a5c98 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.WGS.N C3N-01892 LSCC WGS blood_normal CPT0126440002 CPT0126440002.WholeGenome.RP-1303.bam 60278313066 BAM aligned CPTAC3 bc94eccc-44f4-47aa-940c-084ae6a0ac4d 3a1cd399cf0b15192989769958068aae {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal"} -C3N-01892.WGS.N.hg38 C3N-01892 LSCC WGS blood_normal CPT0126440002 9936e1e5-f01a-4b80-b2e9-13f1ce3a1bfe_wgs_gdc_realn.bam 88208725165 BAM harmonized CPTAC3 86222a6d-e2a9-4183-bb73-a518a823b924 b96fd3d17583a1cc533fa48c018fe409 {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal"} -C3N-01892.WGS.T C3N-01892 LSCC WGS tumor CPT0126390006 CPT0126390006.WholeGenome.RP-1303.bam 56917112585 BAM aligned CPTAC3 6947dadb-9caa-4407-9c57-e8003fc33ffd bdae572c18bcdebe7a24308de27128eb {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor"} -C3N-01892.WGS.T.hg38 C3N-01892 LSCC WGS tumor CPT0126390006 262aaf3d-8ee6-4cff-bce8-a0bbaf248d1e_wgs_gdc_realn.bam 83420440370 BAM harmonized CPTAC3 a2cacbac-133d-4806-8a11-27525bebee82 2ff54b1304eba227e9f383684027f791 {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor"} -C3N-01892.WXS.A C3N-01892 LSCC WXS tissue_normal CPT0126400006 CPT0126400006.WholeExome.RP-1303.bam 26657984926 BAM aligned CPTAC3 bf0b20e2-91d1-48a0-9f58-73465243c82f 7b4109d23b8d582aadc53144e08905bc {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.WXS.A.hg38 C3N-01892 LSCC WXS tissue_normal CPT0126400006 e9434614-c14c-49e8-9440-4ba994f842e7_wxs_gdc_realn.bam 37409114999 BAM harmonized CPTAC3 874afd9b-5827-44a6-bfc3-1be8532cb66d d38a6d77ae183c7b7d35fd65ae073466 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01892.WXS.N C3N-01892 LSCC WXS blood_normal CPT0126440002 CPT0126440002.WholeExome.RP-1303.bam 31755596061 BAM aligned CPTAC3 a120c6cb-b5dc-41b4-859f-35d70588a55f 9272f3960bd4077ac5d67d250ca5d7ea {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal"} -C3N-01892.WXS.N.hg38 C3N-01892 LSCC WXS blood_normal CPT0126440002 9936e1e5-f01a-4b80-b2e9-13f1ce3a1bfe_wxs_gdc_realn.bam 44084485135 BAM harmonized CPTAC3 5a24a636-aa48-4983-a815-0802da4e052e 9b2321a9d70e1b04ec73fce424395037 {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal"} -C3N-01892.WXS.T C3N-01892 LSCC WXS tumor CPT0126390006 CPT0126390006.WholeExome.RP-1303.bam 23502471977 BAM aligned CPTAC3 6e1883e6-cd62-4733-8f41-e2ed6322c18f 3d6858c638539a2220236bebf0e87143 {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor"} -C3N-01892.WXS.T.hg38 C3N-01892 LSCC WXS tumor CPT0126390006 262aaf3d-8ee6-4cff-bce8-a0bbaf248d1e_wxs_gdc_realn.bam 32455152093 BAM harmonized CPTAC3 3f9bf1d4-7102-4b82-8033-1f2b3835f8b2 6efe4d49fe069bdbdcf85d41f461724b {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor"} -C3N-01893.MethArray.Green.A C3N-01893 LSCC Methylation_Array tissue_normal CPT0126470006 203219670147_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 d49ec1c4-76ba-4f83-94d9-1cc076025539 8754c6ae2ccbe32e4d8a727efd349ab2 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.MethArray.Green.T C3N-01893 LSCC Methylation_Array tumor CPT0126450006 203219670122_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6f07d50b-e226-4176-8a4a-9d3f8c247f07 b4fe80239d64f018a869dac674c3f5dd {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor"} -C3N-01893.MethArray.Red.A C3N-01893 LSCC Methylation_Array tissue_normal CPT0126470006 203219670147_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 863c26ff-da12-4563-927d-c1bf0a1fe566 f9669a2a235ddaa0365fd50d0be78bfe {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.MethArray.Red.T C3N-01893 LSCC Methylation_Array tumor CPT0126450006 203219670122_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 475a9f96-ed3d-4b45-a0a4-694fcbcfa5f6 ee3ac03b6cc5252b26c78bdbb8768597 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor"} -C3N-01893.miRNA-Seq.A.hg38 C3N-01893 LSCC miRNA-Seq tissue_normal CPT0126470009 439b1abd-5dbd-4641-ae38-e6e402691dde_mirnaseq_gdc_realn.bam 255605097 BAM harmonized CPTAC3 4e79e043-3449-49a1-9267-efe0c465faac de5a796b310853b97f1ce620241528bc {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.miRNA-Seq.S12_L001_R1.T C3N-01893 LSCC miRNA-Seq tumor CPT0126450009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTTGTA_S12_L001_R1_001.unaln.bam 269111139 BAM S12_L001_R1 unaligned CPTAC3 7c65ec7a-c162-4246-ab02-cb1653d0cf2e 385e4565ff1de6b40105b686facf1d5f {"aliquot_tag": "ALQ_4e40c0b", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01893.miRNA-Seq.S41_L002_R1.A C3N-01893 LSCC miRNA-Seq tissue_normal CPT0126470009 181219_UNC31-K00269_0173_BHYGJJBBXX_TAATCG_S41_L002_R1_001.unaln.bam 230050961 BAM S41_L002_R1 unaligned CPTAC3 a33f9461-6468-48fb-bc9e-75165218a925 0b43d20dc04d293e15457573484f65dc {"aliquot_tag": "ALQ_7e245f6b", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.miRNA-Seq.T.hg38 C3N-01893 LSCC miRNA-Seq tumor CPT0126450009 ba9dc134-d2b1-4982-b717-c8753a9f481f_mirnaseq_gdc_realn.bam 297530247 BAM harmonized CPTAC3 1760d281-8ed4-4658-801e-f047355da221 24d38e373f61cc82c1aa3d74eb6fd23e {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor"} -C3N-01893.RNA-Seq.chimeric.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.chimeric.gdc_realn.bam 24385634 BAM chimeric harmonized CPTAC3 e43b693e-bf7a-4f2a-9a23-96f36496c477 29f9a6dd3ac695c30177c9501d136ba9 {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.RNA-Seq.chimeric.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.chimeric.gdc_realn.bam 29275566 BAM chimeric harmonized CPTAC3 af5dd776-3962-438b-b273-caab463aa105 457ede56dbce75be2c42fa1210e57d61 {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor"} -C3N-01893.RNA-Seq.genomic.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.genomic.gdc_realn.bam 7758043846 BAM genomic harmonized CPTAC3 512e599d-f056-4e01-be0e-b15b01f66fef 3b4f409b5866fe6642b1daba0d6bdfae {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.RNA-Seq.genomic.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.genomic.gdc_realn.bam 9221824929 BAM genomic harmonized CPTAC3 e10b2011-6f9b-48e7-b7e0-6ceeeac23666 b1d90756e8763f5ddb13150357f9982d {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor"} -C3N-01893.RNA-Seq.S28_L007_R1.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R1_001.fastq.gz 3985527794 FASTQ S28_L007_R1 unaligned CPTAC3 4e602d6b-1d29-4c56-acdb-241cc128861d c4b76bbbc36937f4903df6be3ee5dc9f {"aliquot_tag": "ALQ_4e40c0b", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01893.RNA-Seq.S28_L007_R2.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R2_001.fastq.gz 4192059117 FASTQ S28_L007_R2 unaligned CPTAC3 943fbee4-66f9-42ab-9a74-e81edb1d5fb1 e696fd675c1f69621960afac0d0fa242 {"aliquot_tag": "ALQ_4e40c0b", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01893.RNA-Seq.S2_L007_R1.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3424618552 FASTQ S2_L007_R1 unaligned CPTAC3 17a7dd75-5afc-4255-ab09-b3b56bf1f927 90271a9553c95d02e1ceb53efc9be932 {"aliquot_tag": "ALQ_7e245f6b", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.RNA-Seq.S2_L007_R2.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3493300854 FASTQ S2_L007_R2 unaligned CPTAC3 a69bb6ca-fcdf-4ba2-a40e-8e2cfc42293e 8d038680b510495b648befdd6108161e {"aliquot_tag": "ALQ_7e245f6b", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.RNA-Seq.transcriptome.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.transcriptome.gdc_realn.bam 9291273921 BAM transcriptome harmonized CPTAC3 b276586b-b393-4b7a-8d5b-d82feac992d8 de8847808c9b9c263d2bf1dbc0cf2f9f {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.RNA-Seq.transcriptome.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.transcriptome.gdc_realn.bam 11631920863 BAM transcriptome harmonized CPTAC3 3d18765b-c10e-4ae2-91d2-8949ebe78339 7e6fd056456bd3028d7990c4ff6f9277 {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor"} -C3N-01893.WGS.A C3N-01893 LSCC WGS tissue_normal CPT0126470006 CPT0126470006.WholeGenome.RP-1303.bam 57066237444 BAM aligned CPTAC3 34157c2c-5e79-4b41-adea-17e6a1065af7 8fd68d8fdbe8be9632a5db16343bab52 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.WGS.A.hg38 C3N-01893 LSCC WGS tissue_normal CPT0126470006 7c60c534-93d8-4c7c-b33e-8d3281b79bc1_wgs_gdc_realn.bam 81967955301 BAM harmonized CPTAC3 c9c8b11f-4650-435a-8f70-2bdc4956daca 3a03dc39317719f04987b2f86fe3cbe9 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.WGS.N C3N-01893 LSCC WGS blood_normal CPT0126510002 CPT0126510002.WholeGenome.RP-1303.bam 58312849897 BAM aligned CPTAC3 16107d34-2179-47b7-bf9b-fe7cd0578a2d ca905f9bcc305d839eb79535422d2ce8 {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01893.WGS.N.hg38 C3N-01893 LSCC WGS blood_normal CPT0126510002 616d5c12-0f0b-4730-a075-3f376fee9a14_wgs_gdc_realn.bam 84790500558 BAM harmonized CPTAC3 945bd9e8-b7a0-4e0b-a1de-9ca9121057b6 d8a13bbfc15db5a94a132f1de2fb8f8e {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01893.WGS.T C3N-01893 LSCC WGS tumor CPT0126450006 CPT0126450006.WholeGenome.RP-1303.bam 55979530348 BAM aligned CPTAC3 3d3f1400-a790-4645-baec-f4bf3c921a63 a545ab8c1d7804c2fa24858361133178 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor"} -C3N-01893.WGS.T.hg38 C3N-01893 LSCC WGS tumor CPT0126450006 b3ded0d8-e9fe-405b-aba1-07bbb123e5c1_wgs_gdc_realn.bam 81193198745 BAM harmonized CPTAC3 a818f561-7571-4136-8eed-d3d129252a09 2f1491e4d489cb47e95b45ce3d0dc1e9 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor"} -C3N-01893.WXS.A C3N-01893 LSCC WXS tissue_normal CPT0126470006 CPT0126470006.WholeExome.RP-1303.bam 25923609953 BAM aligned CPTAC3 59ccab2f-436c-4265-bb21-8bd323351957 b34ed1e1bcbe5537df1e57205b509e79 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.WXS.A.hg38 C3N-01893 LSCC WXS tissue_normal CPT0126470006 7c60c534-93d8-4c7c-b33e-8d3281b79bc1_wxs_gdc_realn.bam 36009707455 BAM harmonized CPTAC3 b77ddc06-61cd-4745-9aba-a97576144810 a37b458fda01e3bf1c1bf1b94979edf9 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01893.WXS.N C3N-01893 LSCC WXS blood_normal CPT0126510002 CPT0126510002.WholeExome.RP-1303.bam 25932896963 BAM aligned CPTAC3 71014661-d1d9-4089-8d25-8ade03a8f6f9 7c6ceb0a62d809b2e8e3a1db99b2e4f7 {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01893.WXS.N.hg38 C3N-01893 LSCC WXS blood_normal CPT0126510002 616d5c12-0f0b-4730-a075-3f376fee9a14_wxs_gdc_realn.bam 35964101417 BAM harmonized CPTAC3 125eae90-6a68-4939-b71c-8aefb6447a24 a2cec08c2b8e032cf45c77241258f5f3 {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal"} -C3N-01893.WXS.T C3N-01893 LSCC WXS tumor CPT0126450006 CPT0126450006.WholeExome.RP-1303.bam 23375809725 BAM aligned CPTAC3 8372aaaa-ebe8-4ed7-a6d9-c758a6bd83e6 662ff30867d959b639d8f7b3d9a661a1 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor"} -C3N-01893.WXS.T.hg38 C3N-01893 LSCC WXS tumor CPT0126450006 b3ded0d8-e9fe-405b-aba1-07bbb123e5c1_wxs_gdc_realn.bam 32644844364 BAM harmonized CPTAC3 26d49884-64e6-44ce-a7c5-043c28417454 4d3f77aef00add37ca98f8c5e5e686b7 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_9a84b783.MethArray.Green.T C3N-01897 PDA Methylation_Array tumor CPT0162300025 203561450103_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 341298d6-7117-4cfa-9ae1-1df6c4efa725 6adf8f38a2c8d596130c25cd5da2979a {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_9a84b783.MethArray.Red.T C3N-01897 PDA Methylation_Array tumor CPT0162300025 203561450103_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 7aeb0c1f-2097-4d30-8198-298edef0ecff 4639f4d8a2c11865ac3f36a0b9091857 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_9a84b783.WGS.T C3N-01897 PDA WGS tumor CPT0162300025 CPT0162300025.WholeGenome.RP-1303.bam 158783112189 BAM aligned CPTAC3 aae4434f-2159-45c3-8b2d-379b8ef38aac 29ad528ded704a833291589488474bb6 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_9a84b783.WGS.T.hg38 C3N-01897 PDA WGS tumor CPT0162300025 84bc5e5b-8adb-4fb6-a322-3b24daf08ec8_wgs_gdc_realn.bam 230465074591 BAM harmonized CPTAC3 bfaee155-68a0-4d46-aac6-d7e364233807 371b67958f865d6cd32e0fc3070e8e73 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_9a84b783.WXS.T C3N-01897 PDA WXS tumor CPT0162300025 CPT0162300025.WholeExome.RP-1303.bam 48974407289 BAM aligned CPTAC3 5773f62a-fd76-4ab1-b457-a9d41dc937d2 7e0032225587ada183fbb6bb4eaed399 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_9a84b783.WXS.T.hg38 C3N-01897 PDA WXS tumor CPT0162300025 84bc5e5b-8adb-4fb6-a322-3b24daf08ec8_wxs_gdc_realn.bam 69545022042 BAM harmonized CPTAC3 55945505-5a16-4af4-bd12-9be92a741eee f3983d6f5d74254abe653aad11e5129f {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_b81fa86b.MethArray.Green.T C3N-01897 PDA Methylation_Array tumor CPT0162300019 203561450041_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2578100b-bba0-4119-abc5-4327f7783aed aa4c1351fadfe29a4c62661450cfe830 {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_b81fa86b.MethArray.Red.T C3N-01897 PDA Methylation_Array tumor CPT0162300019 203561450041_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 f46d2bb9-f6c8-4628-aaaa-e49c785f150c 18027a025dd8b5669ab3140f44605484 {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_b81fa86b.WGS.T C3N-01897 PDA WGS tumor CPT0162300019 CPT0162300019.WholeGenome.RP-1303.bam 71954267535 BAM aligned CPTAC3 fe784f88-7159-420c-a239-70c9dc208a23 f75dcf4addda7659a7aaaf56fdc5771b {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_b81fa86b.WGS.T.hg38 C3N-01897 PDA WGS tumor CPT0162300019 6096e349-183e-41d9-8d19-8dc690c9137e_wgs_gdc_realn.bam 103897361685 BAM harmonized CPTAC3 3b765381-ef4c-4756-bada-8f5238668016 0e5025377845d086cef73a029e0c87df {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_b81fa86b.WXS.T C3N-01897 PDA WXS tumor CPT0162300019 CPT0162300019.WholeExome.RP-1303.bam 68103574759 BAM aligned CPTAC3 dec364d2-cc30-4ed1-8fbe-81ecd61f016f 9396ce327577e44dbfa21202ad7b257a {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.DUP_b81fa86b.WXS.T.hg38 C3N-01897 PDA WXS tumor CPT0162300019 6096e349-183e-41d9-8d19-8dc690c9137e_wxs_gdc_realn.bam 94888641588 BAM harmonized CPTAC3 9275086f-3c69-403f-9051-2c857279c158 4fd17ea762785c62b06eaac8819e4c97 {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01897.miRNA-Seq.S3_L002_R1.T C3N-01897 PDA miRNA-Seq tumor CPT0162300016 190108_UNC31-K00269_0176_AHYGLVBBXX_TTAGGC_S3_L002_R1_001.unaln.bam 170805407 BAM S3_L002_R1 unaligned CPTAC3 647b8a60-ede8-42cb-8ecd-803f74d97945 3eedc53c5ccdc6ea838dadcb88cbcacb {"aliquot_tag": "ALQ_28a0b5fa", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01897.miRNA-Seq.T.hg38 C3N-01897 PDA miRNA-Seq tumor CPT0162300016 1ae4985d-1671-490c-86f9-b699cd136111_mirnaseq_gdc_realn.bam 191030037 BAM harmonized CPTAC3 ee1d3e3b-da43-4fb7-b3ad-44c7c946bbb9 8a3914b550293d97d61ef06d39ea8e99 {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor"} -C3N-01897.RNA-Seq.chimeric.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.chimeric.gdc_realn.bam 18310796 BAM chimeric harmonized CPTAC3 92f9203c-5bc4-4177-815e-7525f01e5427 5b642fd068e8470bdf8c35127219eadb {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor"} -C3N-01897.RNA-Seq.genomic.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.genomic.gdc_realn.bam 12076518929 BAM genomic harmonized CPTAC3 a187e914-dd4a-4844-a928-31ce5b57e001 b10aaa4d15eb584995a5b1a51c53a61d {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor"} -C3N-01897.RNA-Seq.S5_L002_R1.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R1_001.fastq.gz 3621322188 FASTQ S5_L002_R1 unaligned CPTAC3 393c145c-4d08-45f0-bd45-efd44aa457d4 3f77f0ba65221b1153bc417e2d3634a8 {"aliquot_tag": "ALQ_28a0b5fa", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01897.RNA-Seq.S5_L002_R2.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R2_001.fastq.gz 3895274347 FASTQ S5_L002_R2 unaligned CPTAC3 ec5a4c86-6c49-41a3-b04a-4983b4862110 0985057cf12dc9579f5bff00f2be9924 {"aliquot_tag": "ALQ_28a0b5fa", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01897.RNA-Seq.transcriptome.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.transcriptome.gdc_realn.bam 8895724461 BAM transcriptome harmonized CPTAC3 9a68ebb1-f657-43c1-a093-a07153bca574 555a4687d9fbaf0f5f0adf1096a7d115 {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor"} -C3N-01897.WGS.N C3N-01897 PDA WGS blood_normal CPT0162360002 CPT0162360002.WholeGenome.RP-1303.bam 78111846322 BAM aligned CPTAC3 47c10473-1eb8-4915-9f71-1b37cc89d09e 1cd0eadfec21242f528c8d35da82cb5a {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal"} -C3N-01897.WGS.N.hg38 C3N-01897 PDA WGS blood_normal CPT0162360002 3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wgs_gdc_realn.bam 111496052020 BAM harmonized CPTAC3 d97d2ce5-d2dc-48f3-8918-b4023e0d16c0 e1c7be3889a846c5ab3a1ee84df0c3d9 {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal"} -C3N-01897.WXS.N C3N-01897 PDA WXS blood_normal CPT0162360002 CPT0162360002.WholeExome.RP-1303.bam 21906030833 BAM aligned CPTAC3 e40ea4d3-8d13-42a4-8b2e-e774765273b7 788367c611fda17a8bba118ec3df2f0b {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal"} -C3N-01897.WXS.N.hg38 C3N-01897 PDA WXS blood_normal CPT0162360002 3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wxs_gdc_realn.bam 30186380588 BAM harmonized CPTAC3 9eacaf4b-96a4-4053-b3cb-c725c77a347b 011dd0f8e3dbd30c9774ac7ab141ce79 {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal"} -C3N-01897.WXS.T C3N-01897 PDA WXS tumor CPT0162300021 CPT0162300021.WholeExome.RP-1303.bam 37517675995 BAM aligned CPTAC3 a8f404b2-3e0b-481b-b81b-2cc0d68e8296 be207ab67d0c5d54938be3d03dbb461a {"aliquot_tag": "ALQ_9de9739a", "gdc_sample_type": "Primary Tumor"} -C3N-01898.ANN_d44580ff.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.chimeric.gdc_realn.bam 289228792 BAM chimeric harmonized CPTAC3 acdee08f-d4a5-4fd3-80f2-35c2cf7d4299 6e92dd1b824ad56ee326141af008b606 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.ANN_d44580ff.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.genomic.gdc_realn.bam 8543070025 BAM genomic harmonized CPTAC3 070ffc1c-31af-4363-a21e-9d9701e6de1c 85b3d5c4cea6728e6352eecb1bf19b02 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.ANN_d44580ff.RNA-Seq.S10_L007_R1.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R1_001.fastq.gz 3316609926 FASTQ S10_L007_R1 unaligned CPTAC3 694277e7-1aff-43fb-8e21-b273a0c01c0c c1e841ac4e503251103bbeebbb84d3a0 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01898.ANN_d44580ff.RNA-Seq.S10_L007_R2.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R2_001.fastq.gz 3701937380 FASTQ S10_L007_R2 unaligned CPTAC3 a19de46c-14a1-4ce2-b5d4-a9b165d0de3c ae2f903c68f12ed0b289f0c01dbf17e5 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01898.ANN_d44580ff.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.transcriptome.gdc_realn.bam 9306202193 BAM transcriptome harmonized CPTAC3 70fc8ddd-d683-435a-978e-32ffe2459a24 92ac23deb7105a4d4939b285e70c064b {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_2ae69cb9.WXS.T C3N-01898 PDA WXS tumor CPT0162380036 CPT0162380036.WholeExome.RP-1303.bam 24609711611 BAM aligned CPTAC3 f55b2b16-ec4f-41fd-91b1-040f0ed14f07 d9eb9772171cef19621447c72c5f6e9f {"aliquot_tag": "DUP_2ae69cb9", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_2ae69cb9.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380036 cd1f7189-9831-45a1-84a6-3da46157af2f_wxs_gdc_realn.bam 33886822915 BAM harmonized CPTAC3 cb728c75-d293-4d51-8fc2-d7bb149df890 b63571735ed7461fd71608e9e3c8d68d {"aliquot_tag": "DUP_2ae69cb9", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_6081859f.RNA-Seq.chimeric.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.chimeric.gdc_realn.bam 114455235 BAM chimeric harmonized CPTAC3 96120554-bff3-4ef4-8bf5-277d28ae620e 09dc027828665a4bf459407ac56db228 {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_6081859f.RNA-Seq.genomic.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.genomic.gdc_realn.bam 9921411183 BAM genomic harmonized CPTAC3 2360c285-6f1a-4ed4-81f8-59eb4e9e3f97 c08c6461be18a3210be0dfc064e7fc0b {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_6081859f.RNA-Seq.S3_L004_R1.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R1_001.fastq.gz 3603292349 FASTQ S3_L004_R1 unaligned CPTAC3 8ff8e21d-54cc-491e-a2e8-c7e5e50f0a08 86aac5a81dbc4a4698d9c3a0b867a095 {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_6081859f.RNA-Seq.S3_L004_R2.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R2_001.fastq.gz 3993881614 FASTQ S3_L004_R2 unaligned CPTAC3 77accb30-a7ff-4041-a7b9-17f73e1a050e 5fe427ddbb709e38bcb3f718ce60cbc4 {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_6081859f.RNA-Seq.transcriptome.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.transcriptome.gdc_realn.bam 9745584213 BAM transcriptome harmonized CPTAC3 8c9ee4f3-1eb0-4a55-8d82-60f6080c8d36 9bf3de58b4922dd17e008ea8d48797bd {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_6c730aca.WXS.N C3N-01898 PDA WXS blood_normal CPT0162430002 CPT0162430002.WholeExome.RP-1303.bam 40578557515 BAM aligned CPTAC3 7930cce0-4217-41b4-b16b-572942a228f6 25f17f0f0192a389864e36cdc548a9ee {"aliquot_tag": "DUP_6c730aca", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-01898.DUP_6c730aca.WXS.N.hg38 C3N-01898 PDA WXS blood_normal CPT0162430002 c19a5631-ff53-4b04-a6ca-24781f51dc1e_wxs_gdc_realn.bam 55346006314 BAM harmonized CPTAC3 0cb73006-aa4b-4b91-8cd6-cbe7b1aec6d2 b0bb49c32a9c82a4de641163b1055ce8 {"aliquot_tag": "DUP_6c730aca", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-01898.DUP_b1a486fb.RNA-Seq.chimeric.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.chimeric.gdc_realn.bam 141720652 BAM chimeric harmonized CPTAC3 5ed86af5-eef1-4926-8d58-3a5f678d6463 b8decf81857875518357ee6d66f202a8 {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_b1a486fb.RNA-Seq.genomic.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.genomic.gdc_realn.bam 11648415617 BAM genomic harmonized CPTAC3 42a01c85-9928-4e68-bd70-142a8d5be7ff 5c22e53c83680a2aed53b2b85982a694 {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_b1a486fb.RNA-Seq.S20_L005_R1.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4388440413 FASTQ S20_L005_R1 unaligned CPTAC3 b6230e00-8866-4a1c-8644-87ff6ab0e7a0 eec1cf3a5e102a74e36886a97a80808d {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_b1a486fb.RNA-Seq.S20_L005_R2.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4991190095 FASTQ S20_L005_R2 unaligned CPTAC3 7189c36c-5a0d-417c-a6ce-596ade47f0fb 549574b34fb874ef2659daab7400a8c0 {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_b1a486fb.RNA-Seq.transcriptome.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.transcriptome.gdc_realn.bam 12221713256 BAM transcriptome harmonized CPTAC3 152ca52f-2d8e-416e-850e-5b263f60b6e7 21f3095383bacd4dd924be06c2f6794e {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01898.DUP_b3efcd03.WXS.T C3N-01898 PDA WXS tumor CPT0162380035 CPT0162380035.WholeExome.RP-1303.bam 39334148105 BAM aligned CPTAC3 dd300ded-f8e4-4a08-820b-17ceed338a06 21d69d0e85a6e4520c8de97d3638fed4 {"aliquot_tag": "DUP_b3efcd03", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_b3efcd03.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380035 a04f033e-bcb2-4a8c-8318-bc7f0ab75be7_wxs_gdc_realn.bam 54248662440 BAM harmonized CPTAC3 7ac7c285-ba1c-4746-86e5-f20a05c66a93 d3999babff524e32d57081aa070db7fc {"aliquot_tag": "DUP_b3efcd03", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_c4e8fd95.WXS.T C3N-01898 PDA WXS tumor CPT0162380034 CPT0162380034.WholeExome.RP-1303.bam 28204889544 BAM aligned CPTAC3 13b6317e-cdf3-4831-b061-db183c85a2e2 e05e70af153dff9f01916d7ff691b805 {"aliquot_tag": "DUP_c4e8fd95", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_c4e8fd95.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380034 9ffaf767-e38d-4837-bba4-ab3e2d422e57_wxs_gdc_realn.bam 38890490285 BAM harmonized CPTAC3 c3420a31-d82b-4f1a-b441-2144141db1e8 55e58555111bc41e8a54a5b3d5a2f2bf {"aliquot_tag": "DUP_c4e8fd95", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_fbc39fdd.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.chimeric.gdc_realn.bam 305981281 BAM chimeric harmonized CPTAC3 c161c8e7-3f0c-426f-b330-7874a9a9c5c9 2678a8e3c24a4500c6d4018a99b81aff {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_fbc39fdd.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.genomic.gdc_realn.bam 7873936414 BAM genomic harmonized CPTAC3 5482c003-ba9d-4641-a4c4-58a4846eecd3 835bc07a8b68cffe65d12c8cf2fb2cf5 {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_fbc39fdd.RNA-Seq.S23_L007_R1.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R1_001.fastq.gz 3819049850 FASTQ S23_L007_R1 unaligned CPTAC3 bb03b0cb-df02-4f7b-b520-d3c19bd58ba5 9433c61dd6d5b14f4f00fcb75c9428c8 {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_fbc39fdd.RNA-Seq.S23_L007_R2.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R2_001.fastq.gz 4114846089 FASTQ S23_L007_R2 unaligned CPTAC3 125f919b-f479-4b86-9fed-7c6be5aec2fa 375d150e748b36ad5d0e6ce37218c91c {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01898.DUP_fbc39fdd.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.transcriptome.gdc_realn.bam 10005211197 BAM transcriptome harmonized CPTAC3 29aa0317-de25-4d27-8532-b682b8fdb99f 3c7a3d3c19e8701058ba532623a731eb {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.ANN_46d74460.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.chimeric.gdc_realn.bam 300363036 BAM chimeric harmonized CPTAC3 f86cc43c-fa8b-49a1-8aa5-be5c25ca54cd d72553738de7900286960821029efa67 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.ANN_46d74460.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.genomic.gdc_realn.bam 8758527403 BAM genomic harmonized CPTAC3 10b46424-f686-4607-9e6d-fcff89e41b19 9c0a6acc882fcd6f82a02cac17edd194 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.ANN_46d74460.RNA-Seq.S14_L008_R1.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R1_001.fastq.gz 3734049373 FASTQ S14_L008_R1 unaligned CPTAC3 d7b1e5cb-031f-4fbf-b7ed-351cbedff5d0 61c9b289bd2f99bb2c3cf02bf0f7e3f9 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01899.ANN_46d74460.RNA-Seq.S14_L008_R2.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R2_001.fastq.gz 4458738039 FASTQ S14_L008_R2 unaligned CPTAC3 d394d5b2-2762-4c60-b68d-fcfb9ea43bbf 1c2ead47fa98f1cebeb8811d1da804a0 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S14", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01899.ANN_46d74460.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.transcriptome.gdc_realn.bam 11330582475 BAM transcriptome harmonized CPTAC3 0a1eb73f-fbab-4c7c-8c10-cb4a3d4c65d9 1490f5b6f1c511e70ce07c21dbd61358 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_186c0ff1.RNA-Seq.chimeric.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.chimeric.gdc_realn.bam 148827313 BAM chimeric harmonized CPTAC3 f59ceef7-8343-4d0c-affb-b42abd7a13dd 875e6f9007eb7f51dc80a96286fef353 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01899.DUP_186c0ff1.RNA-Seq.genomic.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.genomic.gdc_realn.bam 6631438888 BAM genomic harmonized CPTAC3 7ee77e92-fe31-4756-8c22-c8674a78adb6 aeb62b88458f9e7604410b26e33f2c4b {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01899.DUP_186c0ff1.RNA-Seq.S19_L005_R1.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 3244064181 FASTQ S19_L005_R1 unaligned CPTAC3 f8a107fa-2560-4f3b-9b30-082ccbb5d73f 0e8a32736f161c444f7cd3b3e0e29da2 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01899.DUP_186c0ff1.RNA-Seq.S19_L005_R2.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 3508298852 FASTQ S19_L005_R2 unaligned CPTAC3 674546be-2b9e-4bbf-ace0-318d7d6b1ff7 78e4e91a34ffc8484ac745a1656a7237 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01899.DUP_186c0ff1.RNA-Seq.transcriptome.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.transcriptome.gdc_realn.bam 8655136604 BAM transcriptome harmonized CPTAC3 b4bf2bae-7c45-4e79-ac13-8d9c18bd82bd 768ba96f565ff634f96ddcc6aa848f23 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01899.DUP_1e566bd4.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.chimeric.gdc_realn.bam 349050446 BAM chimeric harmonized CPTAC3 d5d2444e-4687-428f-90fc-233f7157c274 99eccf84af5f7b6cff112161bf71b6dc {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_1e566bd4.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.genomic.gdc_realn.bam 7716956261 BAM genomic harmonized CPTAC3 c982688b-458a-4658-b6d3-19363ba32877 e836374091503ef04a1e75d0ad384329 {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_1e566bd4.RNA-Seq.S1_L004_R1.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R1_001.fastq.gz 3667226686 FASTQ S1_L004_R1 unaligned CPTAC3 f0d15fc4-e90e-40f1-95be-34300afdbd25 83040d638708313c96180cc6f804428e {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_1e566bd4.RNA-Seq.S1_L004_R2.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R2_001.fastq.gz 3832205652 FASTQ S1_L004_R2 unaligned CPTAC3 ab7f2e71-93c5-4947-9286-05994fae65aa fdbbc4669a63d96cc6b83dc52dddfc9c {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_1e566bd4.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.transcriptome.gdc_realn.bam 9753290342 BAM transcriptome harmonized CPTAC3 cdada004-3728-440c-8c25-0640eee368a1 8c29125abff587f66a0efd6796378e7a {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_217d099c.WXS.T C3N-01899 PDA WXS tumor CPT0162450034 CPT0162450034.WholeExome.RP-1303.bam 21688029245 BAM aligned CPTAC3 6f2e5eb8-8b64-4d26-8834-7ae506f36a38 1ae47bf1ed6dbb2abb4d4b74a32a0515 {"aliquot_tag": "DUP_217d099c", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_217d099c.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450034 c2bc2e43-e735-4a74-a78a-5ad7f9dfb4ce_wxs_gdc_realn.bam 29949678812 BAM harmonized CPTAC3 96ed209d-ca09-4aed-b304-99ebdfdfae70 f0e88708f27c889d5583db3a91c7d89f {"aliquot_tag": "DUP_217d099c", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_567a390a.WXS.T C3N-01899 PDA WXS tumor CPT0162450035 CPT0162450035.WholeExome.RP-1303.bam 31073047341 BAM aligned CPTAC3 4c4d7191-9aaa-4bc2-8738-95f3e6fa3550 425a1658738054a5979f1e2c39cf9582 {"aliquot_tag": "DUP_567a390a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_567a390a.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450035 8e055081-713b-4196-932a-2ee5a04db44e_wxs_gdc_realn.bam 42880039006 BAM harmonized CPTAC3 a8e3fd14-80f3-4fe4-b53b-1128d6131340 f4b3aed1b4f89aa9dbb8ac01cf4f10a7 {"aliquot_tag": "DUP_567a390a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_6e3c9f5b.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.chimeric.gdc_realn.bam 424178710 BAM chimeric harmonized CPTAC3 e27bf4ae-d6d8-4151-b000-a638c33c53b4 f895bd669ad3f5cc3a6eb212e53b1178 {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_6e3c9f5b.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.genomic.gdc_realn.bam 9095675614 BAM genomic harmonized CPTAC3 66afcd3b-76a3-4a5b-9122-818ee6c60983 5445223f59abfd22396fc5c2289d4dcb {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_6e3c9f5b.RNA-Seq.S17_L005_R1.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R1_001.fastq.gz 3684643460 FASTQ S17_L005_R1 unaligned CPTAC3 2cbcaabc-587b-4fc1-9deb-27104406fc9a f2cf3e28b81e254cc24d249d4cf61ea7 {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_6e3c9f5b.RNA-Seq.S17_L005_R2.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R2_001.fastq.gz 3987289186 FASTQ S17_L005_R2 unaligned CPTAC3 768fb307-e987-4073-9ad0-b027904a6892 b00094f7e19e423a77c5586f9d00198e {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_6e3c9f5b.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.transcriptome.gdc_realn.bam 9865725796 BAM transcriptome harmonized CPTAC3 3329c79d-e944-4b4e-850e-009f08274e50 0f815709aea30ce1db06a7faae08079c {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_cf7368b0.WXS.T C3N-01899 PDA WXS tumor CPT0162450036 CPT0162450036.WholeExome.RP-1303.bam 26720318771 BAM aligned CPTAC3 19074838-d206-4af4-bfe1-1b875e0eaca7 e4f3fd08d4c86fa2a7161b6685027de4 {"aliquot_tag": "DUP_cf7368b0", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_cf7368b0.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450036 367fe4ff-5a2e-4cb8-acd4-777fe8b3499d_wxs_gdc_realn.bam 37666160591 BAM harmonized CPTAC3 38fb1142-7649-4b70-a4cd-b4ac272297c7 ea9afb96aefb52eecf33e7aa860e0edd {"aliquot_tag": "DUP_cf7368b0", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-01899.DUP_e08fa3bf.WXS.N C3N-01899 PDA WXS blood_normal CPT0162500002 CPT0162500002.WholeExome.RP-1303.bam 25576856902 BAM aligned CPTAC3 14b6816a-4b7d-4b6a-ae83-e7fe6af167df 79f16f28f0f0cfd5cf73e0e583b6c065 {"aliquot_tag": "DUP_e08fa3bf", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-01899.DUP_e08fa3bf.WXS.N.hg38 C3N-01899 PDA WXS blood_normal CPT0162500002 d0c12dcc-5016-4c9d-bc4c-70283f9ae2c7_wxs_gdc_realn.bam 34693543392 BAM harmonized CPTAC3 8897643b-c9fd-41bc-be7a-adc6ebc44a0a 925d14e9a77b7f172ef7b036b22c18e6 {"aliquot_tag": "DUP_e08fa3bf", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-01900.MethArray.Green.T C3N-01900 PDA Methylation_Array tumor CPT0162600008 203561450102_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 ec22480d-960c-450f-baec-b3dded6df11e 09b4fb5fe64e9ad2e57a41fe8276cba7 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor"} -C3N-01900.MethArray.Red.T C3N-01900 PDA Methylation_Array tumor CPT0162600008 203561450102_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 c23e280e-05d6-4622-bf1d-e81bd5d26b1d 1c71e1893f19bd15410a324ed0112c8e {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor"} -C3N-01900.miRNA-Seq.S1_L004_R1.T C3N-01900 PDA miRNA-Seq tumor CPT0162600011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L004_R1_001.unaln.bam 255444431 BAM S1_L004_R1 unaligned CPTAC3 4052e1de-db18-4cb2-92a5-ba03ae107ca1 d91c572808973e9bcea5336e1e3c5390 {"aliquot_tag": "ALQ_e609b1ea", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01900.miRNA-Seq.T.hg38 C3N-01900 PDA miRNA-Seq tumor CPT0162600011 5b89d8c0-d217-4877-8462-371e7444a63b_mirnaseq_gdc_realn.bam 291362867 BAM harmonized CPTAC3 d1f04ef1-4d47-41d1-be33-2ff045e98292 508addf9ee7f8200b22c6ebdbac09105 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor"} -C3N-01900.RNA-Seq.chimeric.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.chimeric.gdc_realn.bam 32688359 BAM chimeric harmonized CPTAC3 27ec9a8a-d1fa-46d3-9da2-3194cd27e52c e687e3874734986a04c6cae05de303b4 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor"} -C3N-01900.RNA-Seq.genomic.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.genomic.gdc_realn.bam 8025300788 BAM genomic harmonized CPTAC3 3823ef8a-b33b-45af-a87c-61dbddcf95a9 7bfe3cc51ef4a2ef5722ce55b7eca1c0 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor"} -C3N-01900.RNA-Seq.S11_L003_R1.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R1_001.fastq.gz 3903330593 FASTQ S11_L003_R1 unaligned CPTAC3 eb3070e5-30fc-4105-bf8f-05f278a1bd7c e46b1dcc552274f6d846b1ed8b502f8d {"aliquot_tag": "ALQ_e609b1ea", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01900.RNA-Seq.S11_L003_R2.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R2_001.fastq.gz 4027328450 FASTQ S11_L003_R2 unaligned CPTAC3 8c2f2b11-752e-4bdf-b0c0-facfe7ddf8b6 2207c692103b32c4c0a442e632a691aa {"aliquot_tag": "ALQ_e609b1ea", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01900.RNA-Seq.transcriptome.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.transcriptome.gdc_realn.bam 9861392087 BAM transcriptome harmonized CPTAC3 7c2c9947-8d9a-4e40-a593-50556c15c26c 63b3e67d8c506f7ed16e254bee0e6de5 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor"} -C3N-01900.WGS.N C3N-01900 PDA WGS blood_normal CPT0162650002 CPT0162650002.WholeGenome.RP-1303.bam 82132845318 BAM aligned CPTAC3 003f14a5-61fb-47c6-b265-cd9c5972bc28 606a3edd0688bf296cbc1f669293e0cf {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal"} -C3N-01900.WGS.N.hg38 C3N-01900 PDA WGS blood_normal CPT0162650002 0dfe243e-8f6a-4b2d-8673-47e054f8ee47_wgs_gdc_realn.bam 119788131076 BAM harmonized CPTAC3 f14d8add-124c-416b-a15b-cecb1eaba671 786348a2336066485009603c815a4fbd {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal"} -C3N-01900.WGS.T C3N-01900 PDA WGS tumor CPT0162600008 CPT0162600008.WholeGenome.RP-1303.bam 108001796768 BAM aligned CPTAC3 91e76fca-0e81-462d-9e48-1c90c7e2c041 da5f31cef2962c553a293cca8eb6ce5a {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor"} -C3N-01900.WGS.T.hg38 C3N-01900 PDA WGS tumor CPT0162600008 8db438fc-c9df-45ba-abff-f51c8d934b85_wgs_gdc_realn.bam 157701721401 BAM harmonized CPTAC3 dbff5b49-5192-4fc4-ba11-71be2b243e7f 968a91e7ecc5320ea47d5be8c8456ee3 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor"} -C3N-01900.WXS.N C3N-01900 PDA WXS blood_normal CPT0162650002 CPT0162650002.WholeExome.RP-1303.bam 39195302756 BAM aligned CPTAC3 129d0c4a-592e-491f-8409-50624f24d49a bdfc2c6aca66f95e318f265682e00d53 {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal"} -C3N-01900.WXS.N.hg38 C3N-01900 PDA WXS blood_normal CPT0162650002 0dfe243e-8f6a-4b2d-8673-47e054f8ee47_wxs_gdc_realn.bam 53550822913 BAM harmonized CPTAC3 b1890b30-dc40-416c-b83e-0be6a9b1de65 1366329de00908a36c5138cc748af6a1 {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal"} -C3N-01900.WXS.T C3N-01900 PDA WXS tumor CPT0162600008 CPT0162600008.WholeExome.RP-1303.bam 58301362036 BAM aligned CPTAC3 7573adb5-cabf-4bbd-bb12-45092b384986 3d49e94af3a6b56de2edd4e6f0a65674 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor"} -C3N-01900.WXS.T.hg38 C3N-01900 PDA WXS tumor CPT0162600008 8db438fc-c9df-45ba-abff-f51c8d934b85_wxs_gdc_realn.bam 81700185149 BAM harmonized CPTAC3 f639e770-6a95-4af4-85b7-8b29ba52f3d9 ddc9a1a110ebc2afafb9e8cd8d663f21 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor"} -C3N-01902.MethArray.Green.A C3N-01902 CCRCC Methylation_Array tissue_normal CPT0181270006 204930640024_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 725f4a86-4738-4047-8414-986a362b3b49 382f830b8bd38c774aec31da7eabd49e {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.MethArray.Green.T C3N-01902 CCRCC Methylation_Array tumor CPT0181260006 203219720211_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 7f6e8260-a06e-4125-b2bb-bf3890bb1c8f 810caf058ae9957f5682f6db7aaf2aac {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor"} -C3N-01902.MethArray.Red.A C3N-01902 CCRCC Methylation_Array tissue_normal CPT0181270006 204930640024_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 a7045016-932c-468c-9b72-b4e3652b167d 1c99e45066a145edb4a6d20780c26a44 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.MethArray.Red.T C3N-01902 CCRCC Methylation_Array tumor CPT0181260006 203219720211_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 714e57fe-1fd9-45ab-b0e6-57e3e022cf85 ee07d58e0140fa648bbafd73460cf1cf {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor"} -C3N-01902.miRNA-Seq.A.hg38 C3N-01902 CCRCC miRNA-Seq tissue_normal CPT0181270009 263b4bbd-079f-4441-b260-18986ed58a65_mirnaseq_gdc_realn.bam 276410420 BAM harmonized CPTAC3 20df0565-0fc5-40f0-a423-13cad35039d4 cfa75dc8935bea0de533f69866a84adc {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.miRNA-Seq.S45_L005_R1.T C3N-01902 CCRCC miRNA-Seq tumor CPT0181260008 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L005_R1_001.unaln.bam 213804109 BAM S45_L005_R1 unaligned CPTAC3 89238f3c-fc90-4f25-b984-03474ac49ca9 246c862cddc1b42765e932886c78c7b5 {"aliquot_tag": "ALQ_b67d8716", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01902.miRNA-Seq.S46_L005_R1.A C3N-01902 CCRCC miRNA-Seq tissue_normal CPT0181270009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L005_R1_001.unaln.bam 250360607 BAM S46_L005_R1 unaligned CPTAC3 3ef42265-9682-41cf-8c76-103327d6ecbe 4db2adc4fba688911808ba2197b72208 {"aliquot_tag": "ALQ_fc1a9e30", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.miRNA-Seq.T.hg38 C3N-01902 CCRCC miRNA-Seq tumor CPT0181260008 8891103b-753c-431d-87b7-0220040a31f9_mirnaseq_gdc_realn.bam 239779553 BAM harmonized CPTAC3 dc6e0568-689d-401a-9173-09cf08bcc18d 22668b5d11443ea20b376a74f337a6ca {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor"} -C3N-01902.RNA-Seq.chimeric.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.chimeric.gdc_realn.bam 29423841 BAM chimeric harmonized CPTAC3 d0985b4c-371b-4ffc-9538-28c156e3d67e 2eafb23b193f35652323e2f781c992c1 {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.RNA-Seq.chimeric.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.chimeric.gdc_realn.bam 39117872 BAM chimeric harmonized CPTAC3 d4afbe92-ea71-41ca-9386-32133a4edaf4 03ae49867e54fc4a9c0ef4f5c298641d {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor"} -C3N-01902.RNA-Seq.genomic.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.genomic.gdc_realn.bam 7770817615 BAM genomic harmonized CPTAC3 5aa07644-8f46-47f6-99ec-e162445d1bfc af6ad2e069b91e88efb5c9948dac1011 {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.RNA-Seq.genomic.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.genomic.gdc_realn.bam 8065592386 BAM genomic harmonized CPTAC3 483d8869-efb6-4d6f-bd9a-bb3a93e8e581 fd43c35758c4e1486be1fdae4d681777 {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor"} -C3N-01902.RNA-Seq.S5_L002_R1.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R1_001.fastq.gz 3778794556 FASTQ S5_L002_R1 unaligned CPTAC3 887a0ad3-d1e7-4d10-af01-e5918562f524 f819513946e0a539baae6a70c9fc56ce {"aliquot_tag": "ALQ_b67d8716", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01902.RNA-Seq.S5_L002_R2.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R2_001.fastq.gz 4109566650 FASTQ S5_L002_R2 unaligned CPTAC3 86aec419-ac8b-492c-af9a-092baeaab6eb ddf1448d8409f79ee89881b16affe04c {"aliquot_tag": "ALQ_b67d8716", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01902.RNA-Seq.S6_L002_R1.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R1_001.fastq.gz 3646283706 FASTQ S6_L002_R1 unaligned CPTAC3 9892b3ac-a2cd-4199-a0bc-7c1e9fc0a1d9 3222ec5c28a405def937eefe964cb415 {"aliquot_tag": "ALQ_fc1a9e30", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.RNA-Seq.S6_L002_R2.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R2_001.fastq.gz 3901216772 FASTQ S6_L002_R2 unaligned CPTAC3 69d98970-62de-4d6d-b8bc-3b522702970d b6c43035ba488314f19c7dd0e5aea0cb {"aliquot_tag": "ALQ_fc1a9e30", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.RNA-Seq.transcriptome.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.transcriptome.gdc_realn.bam 10154293207 BAM transcriptome harmonized CPTAC3 5d842637-548b-4c3c-8aa2-a0365f98271e c8baae483ec083154a630605d35253a7 {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.RNA-Seq.transcriptome.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.transcriptome.gdc_realn.bam 9595301513 BAM transcriptome harmonized CPTAC3 e97aff21-2ecd-4c39-b4b6-7d2d2dd28aae 54f9884c91cb12ab768efdff7ddca7b0 {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor"} -C3N-01902.WGS.A C3N-01902 CCRCC WGS tissue_normal CPT0181270006 CPT0181270006.WholeGenome.RP-1303.bam 58202752135 BAM aligned CPTAC3 76fe685b-5659-4723-be68-a13b169ac50b 13c1b208a0b5c168e91beb5f0a67ace1 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.WGS.A.hg38 C3N-01902 CCRCC WGS tissue_normal CPT0181270006 f4ffaada-ca69-4f50-9584-5cd222daf5ec_wgs_gdc_realn.bam 86052733025 BAM harmonized CPTAC3 1c59084d-55d6-47a0-8c4c-9fb76be5fb44 178c9f89d4ff06a12a9527a524a903b7 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.WGS.N C3N-01902 CCRCC WGS blood_normal CPT0181310002 CPT0181310002.WholeGenome.RP-1303.bam 74611143802 BAM aligned CPTAC3 2779ca34-edad-4db5-bcc8-735df55188ee 31589706343ac4433e2a0d8b3249c0b9 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01902.WGS.N.hg38 C3N-01902 CCRCC WGS blood_normal CPT0181310002 f34ef635-eb3c-4e89-b20e-d270e1f8172c_wgs_gdc_realn.bam 109716815091 BAM harmonized CPTAC3 7027a8e9-97aa-4737-8e9b-7d04261247a0 30ee39e9f46bfd9ae5819361b42c0a26 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01902.WGS.T C3N-01902 CCRCC WGS tumor CPT0181260006 CPT0181260006.WholeGenome.RP-1303.bam 60444833188 BAM aligned CPTAC3 647d781f-02f9-4bd9-8f08-b92d09668884 94dba18701e26f080924062564d1b093 {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor"} -C3N-01902.WGS.T.hg38 C3N-01902 CCRCC WGS tumor CPT0181260006 83647d70-fefe-496f-9bae-43665b9210ce_wgs_gdc_realn.bam 88239675167 BAM harmonized CPTAC3 2ea6b3f2-2947-4600-a452-de9d58f5be80 bc65211963571d8bf41f00e8822b1134 {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor"} -C3N-01902.WXS.A C3N-01902 CCRCC WXS tissue_normal CPT0181270006 CPT0181270006.WholeExome.RP-1303.bam 20141452571 BAM aligned CPTAC3 b4a39fb2-1c10-4ad9-85d8-06c76be9d1b4 584788842f09b0d99bddc8c6c3290b61 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.WXS.A.hg38 C3N-01902 CCRCC WXS tissue_normal CPT0181270006 f4ffaada-ca69-4f50-9584-5cd222daf5ec_wxs_gdc_realn.bam 27491757236 BAM harmonized CPTAC3 3f7951ee-195d-42d6-bd9f-1777b163806c e1894a253d666699fdaf3f5d52e8ce97 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01902.WXS.N C3N-01902 CCRCC WXS blood_normal CPT0181310002 CPT0181310002.WholeExome.RP-1303.bam 22282364539 BAM aligned CPTAC3 224c642a-0d69-4d7d-bf11-9f8a65a18599 0a82cf47807221209352afd92ee95429 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01902.WXS.N.hg38 C3N-01902 CCRCC WXS blood_normal CPT0181310002 f34ef635-eb3c-4e89-b20e-d270e1f8172c_wxs_gdc_realn.bam 30616812495 BAM harmonized CPTAC3 530dbc50-cee2-4edf-b8c3-f383cac66c33 350781e63c6f73fd51490b5a24117561 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-01902.WXS.T C3N-01902 CCRCC WXS tumor CPT0181260006 CPT0181260006.WholeExome.RP-1303.bam 29423843119 BAM aligned CPTAC3 6f56577d-e40e-4c1d-b766-cd92c90ec268 dbea4288b7567e30528aae80427481bb {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor"} -C3N-01902.WXS.T.hg38 C3N-01902 CCRCC WXS tumor CPT0181260006 83647d70-fefe-496f-9bae-43665b9210ce_wxs_gdc_realn.bam 40150255052 BAM harmonized CPTAC3 95c3184b-9a58-4359-9adb-59fa6cea4269 208bb4335fdc0b64bb325c39c4e3eff2 {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor"} -C3N-01903.MethArray.Green.A C3N-01903 CCRCC Methylation_Array tissue_normal CPT0381210009 205549600088_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d9742a9a-2961-45ce-9bdf-6d20b8a22a37 b9a00731017ed0dd4bff4996b761fd92 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.MethArray.Green.T C3N-01903 CCRCC Methylation_Array tumor CPT0381170009 205589730156_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 1162e684-5ea6-433b-81a9-bf2c6e20daa7 a97e457bc9d35a963651d5f2d2a33a07 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor"} -C3N-01903.MethArray.Red.A C3N-01903 CCRCC Methylation_Array tissue_normal CPT0381210009 205549600088_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 f682def4-7e99-4f0e-94d7-b53b9f0601e2 6a498b89ce4614b66aff13915853f564 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.MethArray.Red.T C3N-01903 CCRCC Methylation_Array tumor CPT0381170009 205589730156_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 0edff60d-4dd7-4f40-bd66-e24bdc66a6b7 9a4d37cb1285f06c6d3a18f0613936db {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor"} -C3N-01903.miRNA-Seq.A.hg38 C3N-01903 CCRCC miRNA-Seq tissue_normal CPT0381210006 21a2e731-9df8-49b6-8c5b-f116aea4341e_mirnaseq_gdc_realn.bam 236490280 BAM harmonized CPTAC3 62f9a603-1dc5-4590-9baa-1db7c1752b97 7af95e955f5a056fa824d15714723875 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.miRNA-Seq.S11_L001_R1.A C3N-01903 CCRCC miRNA-Seq tissue_normal CPT0381210006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTTGTA_S11_L001_R1_001.unaln.bam 221528801 BAM S11_L001_R1 unaligned CPTAC3 19bcb5ac-b8de-48e0-aee0-93aa5eb7d7cb fe6fc1f5fd2cdeb4c3d5fc22189727e8 {"aliquot_tag": "ALQ_cd135e87", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.miRNA-Seq.S13_L001_R1.T C3N-01903 CCRCC miRNA-Seq tumor CPT0381170006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GGCTAC_S13_L001_R1_001.unaln.bam 257535238 BAM S13_L001_R1 unaligned CPTAC3 71e4f953-7363-4736-94cb-23f698a28960 751090d749aa666314a525c3796f95c2 {"aliquot_tag": "ALQ_c4c7d989", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01903.miRNA-Seq.T.hg38 C3N-01903 CCRCC miRNA-Seq tumor CPT0381170006 10b87552-ab75-4c0b-979a-92c7b69fdb37_mirnaseq_gdc_realn.bam 278997628 BAM harmonized CPTAC3 c621eceb-6ae1-42db-bbd4-7621b18ed2f6 4ff2b62bb0b4ef5cab95bc7ed47a9dce {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor"} -C3N-01903.RNA-Seq.chimeric.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.chimeric.gdc_realn.bam 374996677 BAM chimeric harmonized CPTAC3 2226c13c-7844-41cb-a128-18e3928e69f5 b21fa4664a1f871f3af297b9ec5b0b65 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.RNA-Seq.chimeric.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.chimeric.gdc_realn.bam 531840480 BAM chimeric harmonized CPTAC3 620e23c1-0a69-417e-bfc3-58118ff58f68 fb1718e640087519392277d6af75fc66 {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor"} -C3N-01903.RNA-Seq.genomic.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.genomic.gdc_realn.bam 8055113250 BAM genomic harmonized CPTAC3 0dd45bfa-2417-4f4f-8bc7-8f93b9606ecc d786215a9b6050b0c4aa86c1a3836f39 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.RNA-Seq.genomic.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.genomic.gdc_realn.bam 6799806623 BAM genomic harmonized CPTAC3 66d815d6-a4c7-4b7d-91a8-f3b828a91de0 b4862c6d45b147f180facc9570f9abd7 {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor"} -C3N-01903.RNA-Seq.S26_L007_R1.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 3691858569 FASTQ S26_L007_R1 unaligned CPTAC3 8e1d1cdd-0843-4867-8ae0-8248dc85b781 88127249f956bb327887da0c24932e2b {"aliquot_tag": "ALQ_cd135e87", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.RNA-Seq.S26_L007_R2.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4203141537 FASTQ S26_L007_R2 unaligned CPTAC3 bd3d8b0e-35f5-4457-8999-f11961ff7810 ccc533b9f433230053a8811a33b91dbc {"aliquot_tag": "ALQ_cd135e87", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.RNA-Seq.S28_L007_R1.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R1_001.fastq.gz 3320059496 FASTQ S28_L007_R1 unaligned CPTAC3 6399214e-9dc2-4f85-89a4-f3f3cae17fd2 155e88232052a0d15a63d28ee1dc9d66 {"aliquot_tag": "ALQ_c4c7d989", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01903.RNA-Seq.S28_L007_R2.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R2_001.fastq.gz 3762030728 FASTQ S28_L007_R2 unaligned CPTAC3 00ad6df2-e0f2-45ad-8e68-17e9e2127bcb 04cfc354684c0723f84fade96f2a7b22 {"aliquot_tag": "ALQ_c4c7d989", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01903.RNA-Seq.transcriptome.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.transcriptome.gdc_realn.bam 8903177987 BAM transcriptome harmonized CPTAC3 9761a8b6-f2e6-46ad-92e7-9d8dc292f0fe e0a195d4638bc0f97ea9dd96ebf18ce8 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.RNA-Seq.transcriptome.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.transcriptome.gdc_realn.bam 8092691284 BAM transcriptome harmonized CPTAC3 6dd395c8-0a6c-4e93-bdde-c98dfa385daf 60bf00efc8c3a5baae6e4315b2098694 {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor"} -C3N-01903.WGS.N C3N-01903 CCRCC WGS blood_normal CPT0381410002 CPT0381410002.WholeGenome.RP-2158.bam 41368914785 BAM aligned CPTAC3 e67b77e0-eeca-4622-9b1c-0722d91eb5fc dd9cde9ea707e77374c56c00c74f202f {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01903.WGS.N.hg38 C3N-01903 CCRCC WGS blood_normal CPT0381410002 969cdc8d-c366-4ccf-ae04-d3fd3478beb3_wgs_gdc_realn.bam 127001104942 BAM harmonized CPTAC3 81123d82-e2e4-4d41-a0a4-c3de7a4f4cf5 1b845500898bb64ca9bf77222332ff55 {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01903.WGS.T C3N-01903 CCRCC WGS tumor CPT0381170009 CPT0381170009.WholeGenome.RP-2158.bam 20156307452 BAM aligned CPTAC3 e54b2d27-18c0-4fe5-9c32-9b8edf64a850 69f89cc5d9091e3c5f087e19aaf5db37 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor"} -C3N-01903.WGS.T.hg38 C3N-01903 CCRCC WGS tumor CPT0381170009 adb3928b-eef2-4f73-9ef5-b8ecaa913acb_wgs_gdc_realn.bam 58990861497 BAM harmonized CPTAC3 38c8074d-a7d1-4eef-bf77-63426b2ff364 aa51da264da9045241102d84f7afd83c {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor"} -C3N-01903.WXS.A C3N-01903 CCRCC WXS tissue_normal CPT0381210009 CPT0381210009.WholeExome.RP-1303.bam 24800084976 BAM aligned CPTAC3 549f5a96-9453-42f5-87fe-5837f1926092 5c11a44ec0e177480b75b0ceb1772a70 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.WXS.A.hg38 C3N-01903 CCRCC WXS tissue_normal CPT0381210009 175c3ce1-5979-42f1-adbe-6209bc7cbcaa_wxs_gdc_realn.bam 33797352971 BAM harmonized CPTAC3 3cf2a798-41b9-4fad-a28e-8fc3cb56dd81 21c6e75109a46559582250885352a9d6 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01903.WXS.N C3N-01903 CCRCC WXS blood_normal CPT0381410002 CPT0381410002.WholeExome.RP-1303.bam 21560201292 BAM aligned CPTAC3 d137b6a3-e536-44c3-b020-597926143f1c 9b5e4bc21d32c760d53ebb980dfa0369 {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01903.WXS.N.hg38 C3N-01903 CCRCC WXS blood_normal CPT0381410002 969cdc8d-c366-4ccf-ae04-d3fd3478beb3_wxs_gdc_realn.bam 29470877085 BAM harmonized CPTAC3 fa10a0d1-53e5-4d43-b2a7-e575106110e3 925aaac80a5f350eeabae277d5104a11 {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal"} -C3N-01903.WXS.T C3N-01903 CCRCC WXS tumor CPT0381170009 CPT0381170009.WholeExome.RP-1303.bam 24342607086 BAM aligned CPTAC3 6b93d621-a4ed-4bad-aefb-ce11fd44181d 6ac994435f7c4297b178727005e00414 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor"} -C3N-01903.WXS.T.hg38 C3N-01903 CCRCC WXS tumor CPT0381170009 adb3928b-eef2-4f73-9ef5-b8ecaa913acb_wxs_gdc_realn.bam 33279770289 BAM harmonized CPTAC3 ac893da6-3290-4668-9fed-db3141341881 6bb6d7e2fa8237d68d84e8240e0bfbd1 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor"} -C3N-01904.MethArray.Green.T C3N-01904 CCRCC Methylation_Array tumor CPT0381430009 205555390157_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 bd642a10-031a-475c-8144-658b35cf6fdd 5773272557d65f42fe83ae2efd9ad243 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor"} -C3N-01904.MethArray.Red.T C3N-01904 CCRCC Methylation_Array tumor CPT0381430009 205555390157_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 72854a5a-984c-4f6e-8e20-e8e1d95da275 9bb44d9a51058f9777311610466cc2f5 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor"} -C3N-01904.miRNA-Seq.S2_L001_R1.T C3N-01904 CCRCC miRNA-Seq tumor CPT0381430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_AGTCAA_S2_L001_R1_001.unaln.bam 281270434 BAM S2_L001_R1 unaligned CPTAC3 10b99b33-fb23-48b2-9464-ef306c280c2d 765150a3e4ba7da98b82d3c680e6ccc2 {"aliquot_tag": "ALQ_618aeefa", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01904.miRNA-Seq.T.hg38 C3N-01904 CCRCC miRNA-Seq tumor CPT0381430006 8af75e78-343d-423a-9c76-f377aaa71ded_mirnaseq_gdc_realn.bam 301234588 BAM harmonized CPTAC3 a8c7efde-c015-41fa-b810-3f7b3275d2b4 2d6ac46bb8dda0509ac3b430b947fa7f {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor"} -C3N-01904.RNA-Seq.chimeric.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.chimeric.gdc_realn.bam 413018840 BAM chimeric harmonized CPTAC3 626f6d7b-c44f-4853-8876-9739ee57a050 64aeb290cc996f048ebfb65c3e688ef1 {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor"} -C3N-01904.RNA-Seq.genomic.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.genomic.gdc_realn.bam 9568044480 BAM genomic harmonized CPTAC3 6d456424-93c0-476f-9d1d-0099d7220806 b094b3c5f36cf3f310fc0a04262f2cd3 {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor"} -C3N-01904.RNA-Seq.S22_L006_R1.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 4529073333 FASTQ S22_L006_R1 unaligned CPTAC3 ec9c2f10-abe2-4e34-bf65-76b95f07e67e f4b84cfb872ede34f4387061aa9bbd06 {"aliquot_tag": "ALQ_618aeefa", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01904.RNA-Seq.S22_L006_R2.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 5082428448 FASTQ S22_L006_R2 unaligned CPTAC3 694c44c5-29b7-4a2a-8b2b-700c8423889a ca41e1baed9dc91fef25ae7ecb0852b3 {"aliquot_tag": "ALQ_618aeefa", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01904.RNA-Seq.transcriptome.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.transcriptome.gdc_realn.bam 10419516729 BAM transcriptome harmonized CPTAC3 c8552959-fc50-4eeb-8eb4-e1e2163aab10 aa5821c8cca901359037fc66d60eb578 {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor"} -C3N-01904.scRNA-Seq.S1_L003_R1.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S1_L003_R1_001.fastq.gz 3393258637 FASTQ S1_L003_R1 unaligned CPTAC3 db5021be-2fb9-440f-9bcb-96b441560db6 a5daa5f3cc87c4f262b9fdbecd646677 {"aliquot_tag": "ALQ_8f848fd6", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01904.scRNA-Seq.S1_L003_R2.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S1_L003_R2_001.fastq.gz 11533282720 FASTQ S1_L003_R2 unaligned CPTAC3 09eec294-123d-47d1-ae82-c74c3ca43090 b87d870bc8ff26929443304885f218cf {"aliquot_tag": "ALQ_8f848fd6", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01904.scRNA-Seq.S7_L003_R1.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S7_L003_R1_001.fastq.gz 1362438878 FASTQ S7_L003_R1 unaligned CPTAC3 d5fe73fc-ce4a-488b-89e7-b2ea51dcdae5 53e93c5f17f524f08b21c777f2c7a369 {"aliquot_tag": "ALQ_8f848fd6", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01904.scRNA-Seq.S7_L003_R2.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S7_L003_R2_001.fastq.gz 4656013216 FASTQ S7_L003_R2 unaligned CPTAC3 1652c2d5-f51a-4417-bf60-baee3f910d80 bf787d1ff735a650adebbe726e1d7244 {"aliquot_tag": "ALQ_8f848fd6", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01904.WGS.N C3N-01904 CCRCC WGS blood_normal CPT0381540002 CPT0381540002.WholeGenome.RP-2158.bam 23456002017 BAM aligned CPTAC3 0a3af977-8f35-4aa6-809e-597a8c3ab4d1 b6037a0462907211255b0345fc79b4e6 {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal"} -C3N-01904.WGS.N.hg38 C3N-01904 CCRCC WGS blood_normal CPT0381540002 fb97d04c-527d-425e-b8ca-4298ee511f02_wgs_gdc_realn.bam 69955597389 BAM harmonized CPTAC3 e5dd6e78-21c1-4dc6-9b4f-fb7375528426 3b44678b00176e6ca31512ed5ac72ad1 {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal"} -C3N-01904.WGS.T C3N-01904 CCRCC WGS tumor CPT0381430009 CPT0381430009.WholeGenome.RP-2158.bam 22981681101 BAM aligned CPTAC3 00a4c86d-df64-44ae-8c3f-dad499bb240b a032f4f710a33ecdfaee4de0b7142c62 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor"} -C3N-01904.WGS.T.hg38 C3N-01904 CCRCC WGS tumor CPT0381430009 73605cea-79a9-4d31-a331-61e44639f773_wgs_gdc_realn.bam 69297416492 BAM harmonized CPTAC3 46e7e854-ea7d-4a48-9d93-68ff49b13296 2204915a04df6c59126e68f8c9f14ee5 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor"} -C3N-01904.WXS.N C3N-01904 CCRCC WXS blood_normal CPT0381540002 CPT0381540002.WholeExome.RP-1303.bam 23426915094 BAM aligned CPTAC3 53c1e40b-b557-4808-8492-0c7aede22778 65f123aa3c6b7707564c712a4eca874e {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal"} -C3N-01904.WXS.N.hg38 C3N-01904 CCRCC WXS blood_normal CPT0381540002 fb97d04c-527d-425e-b8ca-4298ee511f02_wxs_gdc_realn.bam 31755321391 BAM harmonized CPTAC3 0ddfcf44-17ca-49c5-a49a-4cf3af83087f 080676a59fe6ecf5dde20715fe6ebd3d {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal"} -C3N-01904.WXS.T C3N-01904 CCRCC WXS tumor CPT0381430009 CPT0381430009.WholeExome.RP-1303.bam 25757830045 BAM aligned CPTAC3 45a9bf02-81c9-4882-be91-ce8bf367896a 812e08754850746f4a5833c46b73c9cf {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor"} -C3N-01904.WXS.T.hg38 C3N-01904 CCRCC WXS tumor CPT0381430009 73605cea-79a9-4d31-a331-61e44639f773_wxs_gdc_realn.bam 35146065655 BAM harmonized CPTAC3 273b292c-5b87-4fa7-92a8-e9f0a90c225a f578fe4af86bca3dc70cec1f6a37ce07 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor"} -C3N-01905.MethArray.Green.A C3N-01905 CCRCC Methylation_Array tissue_normal CPT0124300006 204930630034_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 60259406-6232-438b-a778-5f9ef96b0400 81b830e2236219b0060201bce9a19031 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.MethArray.Green.T C3N-01905 CCRCC Methylation_Array tumor CPT0124210006 203271750047_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4e26f78b-317f-4daf-96bd-9748066a06e1 d22f4824c9059f670713144ba63a6179 {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor"} -C3N-01905.MethArray.Red.A C3N-01905 CCRCC Methylation_Array tissue_normal CPT0124300006 204930630034_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 7c8e0d92-dfc2-470e-a47d-d2b440488daf 8f7d2c4eef1d8b29bba86fd90b785464 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.MethArray.Red.T C3N-01905 CCRCC Methylation_Array tumor CPT0124210006 203271750047_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 0414d268-4eb6-4e64-aa51-d3ebb95cc436 773babb4b9d675443fcbaf148af94748 {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor"} -C3N-01905.miRNA-Seq.A.hg38 C3N-01905 CCRCC miRNA-Seq tissue_normal CPT0124300009 efce5f87-ea0b-4f6e-87b2-cece3d3a673c_mirnaseq_gdc_realn.bam 241143242 BAM harmonized CPTAC3 f080ed80-dc32-4ba5-a0ed-49e209c2ab35 6711e8688570927f8cadb92fb306edcf {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.miRNA-Seq.S36_L005_R1.T C3N-01905 CCRCC miRNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0176_AHYGLVBBXX_CCAACA_S36_L005_R1_001.unaln.bam 275782932 BAM S36_L005_R1 unaligned CPTAC3 c620d356-8972-4ef7-a0e9-8ae44e16d570 4e98340cc18d8000c784e74771e11788 {"aliquot_tag": "ALQ_b0a258ff", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01905.miRNA-Seq.S7_L002_R1.A C3N-01905 CCRCC miRNA-Seq tissue_normal CPT0124300009 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L002_R1_001.unaln.bam 222342284 BAM S7_L002_R1 unaligned CPTAC3 4bbaaa7d-b781-4f56-8cc1-b125af7a0ce8 a6df8989423af4a0189772bf81116ef3 {"aliquot_tag": "ALQ_469ea2ea", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.miRNA-Seq.T.hg38 C3N-01905 CCRCC miRNA-Seq tumor CPT0124210009 cb58c2cb-2be1-4986-aab3-7961bbe5ffe3_mirnaseq_gdc_realn.bam 298964683 BAM harmonized CPTAC3 5d1b23b1-df1e-453a-bce1-ec2f207c0d5a 85d99f0983a51610d62f731a07f5341b {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor"} -C3N-01905.RNA-Seq.chimeric.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.chimeric.gdc_realn.bam 178628768 BAM chimeric harmonized CPTAC3 6bf3d6a5-436f-4e81-9e72-9a28c829f975 3ab2b0ab181601884fff48aacbe68d74 {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.RNA-Seq.chimeric.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.chimeric.gdc_realn.bam 34118612 BAM chimeric harmonized CPTAC3 98d2d0f9-e551-4328-ba5a-23bc9961998c 9fca3195fbd25c7e2b6d259ede9ddac1 {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor"} -C3N-01905.RNA-Seq.genomic.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.genomic.gdc_realn.bam 10130276417 BAM genomic harmonized CPTAC3 7a0ebbaf-1fac-4333-9d95-7b4b1c80f407 31f3158dcf8132de63d840911b9d6561 {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.RNA-Seq.genomic.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.genomic.gdc_realn.bam 7992852184 BAM genomic harmonized CPTAC3 7f624411-67a9-4105-861c-d5f159869d44 dfaf9b08519f9f95e8aef4481ab46ff4 {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor"} -C3N-01905.RNA-Seq.S16_L004_R1.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R1_001.fastq.gz 3883414587 FASTQ S16_L004_R1 unaligned CPTAC3 634ad8f8-227e-4742-a2ea-a224081e3544 9285b30fe54c2e2eac7e237ccc79e659 {"aliquot_tag": "ALQ_b0a258ff", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01905.RNA-Seq.S16_L004_R2.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R2_001.fastq.gz 4017058100 FASTQ S16_L004_R2 unaligned CPTAC3 c2f011af-3c00-4720-931f-9a97b46e081a ba6ca9340b12ebb9243ac23df809413d {"aliquot_tag": "ALQ_b0a258ff", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01905.RNA-Seq.S6_L004_R1.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R1_001.fastq.gz 4569038241 FASTQ S6_L004_R1 unaligned CPTAC3 ec354fef-7a90-4200-b919-f019b764e28f b0ec57fd2acbbeda53b0ad075e25f0e2 {"aliquot_tag": "ALQ_469ea2ea", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.RNA-Seq.S6_L004_R2.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R2_001.fastq.gz 5056705329 FASTQ S6_L004_R2 unaligned CPTAC3 857de801-17c6-4e83-9b3a-6bc0ca7884a1 ed8528bde2bb3bc77dac3d4cc2c60069 {"aliquot_tag": "ALQ_469ea2ea", "sample": "S6", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.RNA-Seq.transcriptome.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.transcriptome.gdc_realn.bam 11962641741 BAM transcriptome harmonized CPTAC3 35450836-7e54-496d-93d3-24f9650b0ff8 26c8907ed2e2ca36d2984b771715f6bc {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.RNA-Seq.transcriptome.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.transcriptome.gdc_realn.bam 10549697664 BAM transcriptome harmonized CPTAC3 9961f176-3d48-469e-b753-40cbf0027a04 69e7806739be50aa6bf0c90fa7757184 {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor"} -C3N-01905.WGS.A C3N-01905 CCRCC WGS tissue_normal CPT0124300006 CPT0124300006.WholeGenome.RP-1303.bam 61953026588 BAM aligned CPTAC3 ae08017b-4c49-4f5b-bfe8-9e5799d7630c ce6f9a87b5a1beb990018c62874f58fe {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.WGS.A.hg38 C3N-01905 CCRCC WGS tissue_normal CPT0124300006 9d985435-8848-4d92-b51c-14a5f155d6bb_wgs_gdc_realn.bam 90060154555 BAM harmonized CPTAC3 1ded8b8e-9f60-4cbd-8d4e-de984ef6f50b 02258fadc84c575f7de4761a2337299c {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.WGS.N C3N-01905 CCRCC WGS blood_normal CPT0124340002 CPT0124340002.WholeGenome.RP-1303.bam 62502300635 BAM aligned CPTAC3 c6f5ef00-c23c-41c4-9b62-c0826cac8262 ab32fcb30873daf61238a8778acbc4f9 {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01905.WGS.N.hg38 C3N-01905 CCRCC WGS blood_normal CPT0124340002 71e0d820-65e4-41a7-806b-c4257071fc0f_wgs_gdc_realn.bam 89352023487 BAM harmonized CPTAC3 995d6368-2fe8-4a53-9557-a84cbea5a930 d2b7f1cbd94676910dd0f85a10a5559a {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01905.WGS.T C3N-01905 CCRCC WGS tumor CPT0124210006 CPT0124210006.WholeGenome.RP-1303.bam 61116274613 BAM aligned CPTAC3 b48c4d43-5c4b-4a08-aebe-c04ee7b4cb09 afdef70e90b8b5123e0c819b100d986c {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor"} -C3N-01905.WGS.T.hg38 C3N-01905 CCRCC WGS tumor CPT0124210006 9fe1da04-04cb-456d-92d2-2e589c170a1c_wgs_gdc_realn.bam 90353506941 BAM harmonized CPTAC3 8252d9e4-ed85-4cfe-bd53-a25813420b05 01220d85afd7de3352d59f5950fd3ebe {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor"} -C3N-01905.WXS.A C3N-01905 CCRCC WXS tissue_normal CPT0124300006 CPT0124300006.WholeExome.RP-1303.bam 20457791183 BAM aligned CPTAC3 52950ae3-afcd-4928-831c-83c7d6b4bbf1 d238ff8d1866b6d25a887dc89d684684 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.WXS.A.hg38 C3N-01905 CCRCC WXS tissue_normal CPT0124300006 9d985435-8848-4d92-b51c-14a5f155d6bb_wxs_gdc_realn.bam 28465640044 BAM harmonized CPTAC3 22f87dc6-e139-4a13-afeb-952b8eb79965 efbebfe8a6c8b4c49c643196f0e37f36 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01905.WXS.N C3N-01905 CCRCC WXS blood_normal CPT0124340002 CPT0124340002.WholeExome.RP-1303.bam 24272635809 BAM aligned CPTAC3 4f9b54e8-49c8-4186-a1e6-441b98a62497 6552826ebf5a783471b1fcbe13af9e71 {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01905.WXS.N.hg38 C3N-01905 CCRCC WXS blood_normal CPT0124340002 71e0d820-65e4-41a7-806b-c4257071fc0f_wxs_gdc_realn.bam 33177750872 BAM harmonized CPTAC3 f904b85a-0e75-413e-9d0e-2be5bedbe69b 69aee64ac699642face20df701b837a2 {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01905.WXS.T C3N-01905 CCRCC WXS tumor CPT0124210006 CPT0124210006.WholeExome.RP-1303.bam 30061072111 BAM aligned CPTAC3 ced6c7cb-edf6-40b5-b562-4a400e8368d6 e74f66dbab8373ff4882c9539382d91d {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor"} -C3N-01905.WXS.T.hg38 C3N-01905 CCRCC WXS tumor CPT0124210006 9fe1da04-04cb-456d-92d2-2e589c170a1c_wxs_gdc_realn.bam 42225849168 BAM harmonized CPTAC3 25c21d4b-9028-42ce-934d-87327a43050c 688c4bbd35ec182ee5b79f3cf1d53afa {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor"} -C3N-01907.MethArray.Green.T C3N-01907 PDA Methylation_Array tumor CPT0162830008 203561620072_R01C01_Grn.idat 13676218 IDAT Green NA CPTAC3 f021f35d-fe28-4de8-a558-e59f2d0acaba ed576c6d4577f8b4fd4ec27408a1a9d0 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor"} -C3N-01907.MethArray.Red.T C3N-01907 PDA Methylation_Array tumor CPT0162830008 203561620072_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 82b508fd-6928-4aed-b5b0-f86e56eac933 745e5fdc021f49557f7a57ecd8259259 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor"} -C3N-01907.miRNA-Seq.S12_L006_R1.T C3N-01907 PDA miRNA-Seq tumor CPT0162830011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCAACA_S12_L006_R1_001.unaln.bam 237720203 BAM S12_L006_R1 unaligned CPTAC3 b0011162-0894-45c9-9a53-33f6f557b00f f8934d795daf203471952e8aeda9f0e5 {"aliquot_tag": "ALQ_9ba3aa4a", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01907.miRNA-Seq.T.hg38 C3N-01907 PDA miRNA-Seq tumor CPT0162830011 5c0aa812-0a55-4ed4-8876-bb589be31409_mirnaseq_gdc_realn.bam 264132706 BAM harmonized CPTAC3 c050c3a8-20a5-4e1f-a8eb-ce3a41d7ecc4 eff96c8cea378316024a7f6260463d20 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor"} -C3N-01907.RNA-Seq.chimeric.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.chimeric.gdc_realn.bam 46219557 BAM chimeric harmonized CPTAC3 83c8f122-1672-49ab-b3f8-8e2060e66909 91c0469bbae6cf7f05bc02675535b7f0 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor"} -C3N-01907.RNA-Seq.genomic.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.genomic.gdc_realn.bam 11609413373 BAM genomic harmonized CPTAC3 8df0b51a-f751-4b31-869f-960e1340547f 808ae7dc79f9846c9823106b8f80dd85 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor"} -C3N-01907.RNA-Seq.S15_L004_R1.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 4432083755 FASTQ S15_L004_R1 unaligned CPTAC3 65b64b6c-529a-4724-b8ce-38a225cb572c 9f8dc7cfc61a1035f8735401f665f009 {"aliquot_tag": "ALQ_9ba3aa4a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01907.RNA-Seq.S15_L004_R2.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 4919976698 FASTQ S15_L004_R2 unaligned CPTAC3 bad5f741-5f43-4cce-b96d-0a559c9336be 01295e51fc7a152390f0682b01b08eeb {"aliquot_tag": "ALQ_9ba3aa4a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01907.RNA-Seq.transcriptome.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.transcriptome.gdc_realn.bam 10789634457 BAM transcriptome harmonized CPTAC3 de40caf9-5efc-4b88-bab4-d085fafdbe7b 69cf6dfe7e393cbe29c8683c56a4d815 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor"} -C3N-01907.WGS.N C3N-01907 PDA WGS blood_normal CPT0162870002 CPT0162870002.WholeGenome.RP-1303.bam 76936729921 BAM aligned CPTAC3 a3a1f50c-c025-4ba7-b477-28eec659a2fa eb54adf058f733bffc8f745b367532e9 {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01907.WGS.N.hg38 C3N-01907 PDA WGS blood_normal CPT0162870002 ee39c35d-388f-4d49-b2f3-81d7f51f7867_wgs_gdc_realn.bam 112116424585 BAM harmonized CPTAC3 ebb59086-9585-461d-8698-17fb6c695d02 aadb030c4a65d90e78ca3f99a56a44e1 {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01907.WGS.T C3N-01907 PDA WGS tumor CPT0162830008 CPT0162830008.WholeGenome.RP-1303.bam 144970727417 BAM aligned CPTAC3 c23fb285-6016-4c82-83b1-ad96009162a4 27c8276f25362ca9fc6fc3488f961786 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor"} -C3N-01907.WGS.T.hg38 C3N-01907 PDA WGS tumor CPT0162830008 1c3202ce-2f6e-4a96-8c5c-dac2732472a7_wgs_gdc_realn.bam 211474710097 BAM harmonized CPTAC3 11a3c7ff-c3fb-4ba4-9e93-81345f39d8ce c0956ff026cd50b09da5dff1bd6c53ce {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor"} -C3N-01907.WXS.N C3N-01907 PDA WXS blood_normal CPT0162870002 CPT0162870002.WholeExome.RP-1303.bam 23840175418 BAM aligned CPTAC3 865fc727-6eb0-4c37-91cc-c660f3b7746d f484674191238c7660e732d19887bb30 {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01907.WXS.N.hg38 C3N-01907 PDA WXS blood_normal CPT0162870002 ee39c35d-388f-4d49-b2f3-81d7f51f7867_wxs_gdc_realn.bam 32850943418 BAM harmonized CPTAC3 ec8e41fd-887c-4687-b2f0-ab147d72cb28 88e119154ccf595fbb8591814765915a {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal"} -C3N-01907.WXS.T C3N-01907 PDA WXS tumor CPT0162830008 CPT0162830008.WholeExome.RP-1303.bam 50290828309 BAM aligned CPTAC3 af193ec0-21f3-413e-8066-7d0069a7d939 c69f020357b70425e75d456e97aa84cc {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor"} -C3N-01907.WXS.T.hg38 C3N-01907 PDA WXS tumor CPT0162830008 1c3202ce-2f6e-4a96-8c5c-dac2732472a7_wxs_gdc_realn.bam 70564791590 BAM harmonized CPTAC3 f87c0006-6f17-4264-94de-1bfe5463622f 4025b32fb9d3910b5498721d25cde303 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor"} -C3N-01943.MethArray.Green.A C3N-01943 HNSCC Methylation_Array tissue_normal CPT0163430006 203273200080_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 d85eb652-26a9-4d06-aaba-3d374ae0d577 4c4882ef336c7b5b8a6806373c1cf6bb {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.MethArray.Green.T C3N-01943 HNSCC Methylation_Array tumor CPT0163410006 203271750047_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 95064813-5fc0-4ee2-b10b-7914402e9be2 6ae30f785b58cdf3218c07968caf8dd1 {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor"} -C3N-01943.MethArray.Red.A C3N-01943 HNSCC Methylation_Array tissue_normal CPT0163430006 203273200080_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 ca66d930-5ade-49af-9b59-9eae10a8b2cc 420b45272bb42ad35d047aa2abe062f9 {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.MethArray.Red.T C3N-01943 HNSCC Methylation_Array tumor CPT0163410006 203271750047_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 beb9c7cc-d66d-489c-9f1c-6ceaf5758b67 c171721e014d3eaf069d485cc24dd7da {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor"} -C3N-01943.miRNA-Seq.A.hg38 C3N-01943 HNSCC miRNA-Seq tissue_normal CPT0163430009 cde2aeb5-cfdf-4878-a122-c2c0a8f097db_mirnaseq_gdc_realn.bam 293139160 BAM harmonized CPTAC3 2dc32065-d92b-4ad8-8c8b-e72d2d61e456 2d33294d34b35aabd73d7c41877b8ebb {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.miRNA-Seq.S14_L001_R1.A C3N-01943 HNSCC miRNA-Seq tissue_normal CPT0163430009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L001_R1_001.unaln.bam 263831301 BAM S14_L001_R1 unaligned CPTAC3 f7bd89bc-fbd4-4aea-b0ba-7ac5cbdc3ea6 4abc8da414958726181fb0ef46715744 {"aliquot_tag": "ALQ_5dd6d8f6", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.miRNA-Seq.S27_L002_R1.T C3N-01943 HNSCC miRNA-Seq tumor CPT0163410009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATTCCT_S27_L002_R1_001.unaln.bam 257979026 BAM S27_L002_R1 unaligned CPTAC3 2b33d247-9b88-48c8-86ad-8a66b4a12e57 3d021d71e87059bbacf3af2e9ab5b1ee {"aliquot_tag": "ALQ_27168b96", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01943.miRNA-Seq.T.hg38 C3N-01943 HNSCC miRNA-Seq tumor CPT0163410009 f5ed841b-ab8b-41ff-8d5d-b10aff881cc7_mirnaseq_gdc_realn.bam 291817805 BAM harmonized CPTAC3 66fabb4c-94dc-4a75-8941-fef39a2fd45f 8eb52bbcd672045297acd95ba8bcd7d8 {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor"} -C3N-01943.RNA-Seq.chimeric.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.chimeric.gdc_realn.bam 229627330 BAM chimeric harmonized CPTAC3 b1cb58cb-eafc-4cba-844c-f562d897906a 9f1971d3a2d10083e9f878e70ed194b2 {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.RNA-Seq.chimeric.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.chimeric.gdc_realn.bam 272800435 BAM chimeric harmonized CPTAC3 b817f9e0-b7bb-4951-ba15-646443695f7a 31aabb91c4fa1ed52a15b78702e0ab2e {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor"} -C3N-01943.RNA-Seq.genomic.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.genomic.gdc_realn.bam 7722806430 BAM genomic harmonized CPTAC3 b819e475-f772-4e3e-b948-ce0b30e5c340 057f8e139613d92cf8614eebd7dad4c3 {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.RNA-Seq.genomic.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.genomic.gdc_realn.bam 7988084503 BAM genomic harmonized CPTAC3 78806e14-55ba-46a8-8556-e976d5163449 c7427778311b50cb94964d8754ab1095 {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor"} -C3N-01943.RNA-Seq.S19_L005_R1.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R1_001.fastq.gz 3793274236 FASTQ S19_L005_R1 unaligned CPTAC3 45275e46-5062-4d69-a686-d04d5547f604 087473ff7f7f83e2e77cdc26b11f3cf9 {"aliquot_tag": "ALQ_5dd6d8f6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.RNA-Seq.S19_L005_R2.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R2_001.fastq.gz 4030990961 FASTQ S19_L005_R2 unaligned CPTAC3 5b426b25-d2f5-444d-9764-578b39d0aece 2c910822361221ab429b436640148e12 {"aliquot_tag": "ALQ_5dd6d8f6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.RNA-Seq.S1_L007_R1.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3902422854 FASTQ S1_L007_R1 unaligned CPTAC3 68c5614d-cbd8-420d-bd6e-f9d959a20e70 ce121d28f0d4f36d165de3c6c288e2c9 {"aliquot_tag": "ALQ_27168b96", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01943.RNA-Seq.S1_L007_R2.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 4193569724 FASTQ S1_L007_R2 unaligned CPTAC3 bdbdc07c-3db0-4346-b066-71179f83f3f5 771af00fb1e875f8fd0e7ddec0af915b {"aliquot_tag": "ALQ_27168b96", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01943.RNA-Seq.transcriptome.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.transcriptome.gdc_realn.bam 10212502479 BAM transcriptome harmonized CPTAC3 4616062d-2a82-466f-a138-a970730dff0c 0aba2403c7ccdef6c71394216aedede6 {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.RNA-Seq.transcriptome.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.transcriptome.gdc_realn.bam 10783688599 BAM transcriptome harmonized CPTAC3 d611ca43-e6a5-421c-8669-5fb01a606cc8 e3798d1d4295f3a9ea4a19bdaf582f83 {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor"} -C3N-01943.WGS.N C3N-01943 HNSCC WGS blood_normal CPT0163470002 CPT0163470002.WholeGenome.RP-1303.bam 63720322260 BAM aligned CPTAC3 12329dd1-e025-4e5a-8adc-d9913290a3a7 2224d013cd0663f1c08df8737cb50efc {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal"} -C3N-01943.WGS.N.hg38 C3N-01943 HNSCC WGS blood_normal CPT0163470002 42e06b2a-87a0-4677-81df-704db9d4d965_wgs_gdc_realn.bam 93017158901 BAM harmonized CPTAC3 008bdc6f-cd5b-42cd-899c-9a9e72b5c837 485cd139ce9204cee2fbdbd6077f802d {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal"} -C3N-01943.WGS.T C3N-01943 HNSCC WGS tumor CPT0163410006 CPT0163410006.WholeGenome.RP-1303.bam 97690023099 BAM aligned CPTAC3 b8d3cb90-dd4c-45e7-ad70-c67bb79908be 2f048c2c7f8f55d955ce22602a281dfc {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor"} -C3N-01943.WGS.T.hg38 C3N-01943 HNSCC WGS tumor CPT0163410006 89893dd8-439e-4c58-8d96-13c4baea42e6_wgs_gdc_realn.bam 141752436450 BAM harmonized CPTAC3 f310ac63-f811-451c-bb2f-5c6ff9112304 0ecfc29b00d3603b2143825ab04aa9c8 {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor"} -C3N-01943.WXS.A C3N-01943 HNSCC WXS tissue_normal CPT0163430006 CPT0163430006.WholeExome.RP-1303.bam 19053026786 BAM aligned CPTAC3 b146d5f2-8f66-4107-bf66-94e9ca28d099 0e823edbef31f7e7fc2207e2a3ade609 {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.WXS.A.hg38 C3N-01943 HNSCC WXS tissue_normal CPT0163430006 add62bca-750e-42fe-8c4a-9ae4c6849f08_wxs_gdc_realn.bam 26349234662 BAM harmonized CPTAC3 238a9f6d-2823-4230-85ef-80e49f89477c 30e7933ee79b636c414fadf31b17a951 {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01943.WXS.N C3N-01943 HNSCC WXS blood_normal CPT0163470002 CPT0163470002.WholeExome.RP-1303.bam 20733743211 BAM aligned CPTAC3 f0de96a4-01a3-4a12-9871-1eca473d5055 8f64e557d498d3ed6718a5061efe277d {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal"} -C3N-01943.WXS.N.hg38 C3N-01943 HNSCC WXS blood_normal CPT0163470002 42e06b2a-87a0-4677-81df-704db9d4d965_wxs_gdc_realn.bam 28956852160 BAM harmonized CPTAC3 3f0d244a-1c14-4af7-8135-a3371f498c99 b1f648e6f1b81ffb49852a0504765e96 {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal"} -C3N-01943.WXS.T C3N-01943 HNSCC WXS tumor CPT0163410006 CPT0163410006.WholeExome.RP-1303.bam 27374236973 BAM aligned CPTAC3 e1835eac-ba02-407c-b5b9-14c4271137a5 820477d5997eb12fca6216e0bca5d2f3 {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor"} -C3N-01943.WXS.T.hg38 C3N-01943 HNSCC WXS tumor CPT0163410006 89893dd8-439e-4c58-8d96-13c4baea42e6_wxs_gdc_realn.bam 37837026335 BAM harmonized CPTAC3 ab224c99-edee-4bd1-8861-d9ea89c12c2a 97aaab23e2f37ebb1a3622576928786a {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor"} -C3N-01944.MethArray.Green.A C3N-01944 HNSCC Methylation_Array tissue_normal CPT0163490006 203273200155_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c221ac69-e794-4f9b-8316-9130fd5d6172 a3bc50afd36485cdcdbdeb76fcc43b06 {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.MethArray.Green.T C3N-01944 HNSCC Methylation_Array tumor CPT0163480006 203220070154_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a0465e13-a39c-4eaf-bdf7-c7b357460667 c4dbaf6c5ea73b11a54adeac371e775a {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor"} -C3N-01944.MethArray.Red.A C3N-01944 HNSCC Methylation_Array tissue_normal CPT0163490006 203273200155_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 c6674454-2fc8-4b7a-a609-4dd58a589fbd df88ec35836455e7a414e88413f61feb {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.MethArray.Red.T C3N-01944 HNSCC Methylation_Array tumor CPT0163480006 203220070154_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 df36b5be-ce92-47d3-b314-35a35d5a5540 48a60b61634a967ed48d62261f4e7242 {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor"} -C3N-01944.miRNA-Seq.A.hg38 C3N-01944 HNSCC miRNA-Seq tissue_normal CPT0163490009 f1210ac3-cd29-4fc9-8575-4a78b78bab28_mirnaseq_gdc_realn.bam 208345231 BAM harmonized CPTAC3 49d96948-5694-4287-b779-1486cecaa4fe 25386bc6a6874cd214451596e2ecea9e {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.miRNA-Seq.S1_L001_R1.A C3N-01944 HNSCC miRNA-Seq tissue_normal CPT0163490009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATCACG_S1_L001_R1_001.unaln.bam 182607069 BAM S1_L001_R1 unaligned CPTAC3 aff4a266-cf18-4201-aa52-dd7097003f69 3084819f30681f0f0fa28e7919a2a37a {"aliquot_tag": "ALQ_1766c057", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.miRNA-Seq.S28_L002_R1.T C3N-01944 HNSCC miRNA-Seq tumor CPT0163480009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L002_R1_001.unaln.bam 260708202 BAM S28_L002_R1 unaligned CPTAC3 347ddf28-47f9-4250-b744-25b785d1ffb5 d4284517e369ea9e10ce24bb09b47ac4 {"aliquot_tag": "ALQ_2a06e9e7", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01944.miRNA-Seq.T.hg38 C3N-01944 HNSCC miRNA-Seq tumor CPT0163480009 879d37d7-0b83-40b4-b823-0da7301956d3_mirnaseq_gdc_realn.bam 288365370 BAM harmonized CPTAC3 759487c9-5f19-4d7f-acfb-40b5a49416ad 5d8a83b37852b5b5e46e0f3a6b5982a8 {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.chimeric.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.chimeric.gdc_realn.bam 315890640 BAM chimeric harmonized CPTAC3 7b3ad84e-10be-4b72-8e0b-17fcaad2ba5d 2dd9dbca69f6c2c110669adf90984dd3 {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.RNA-Seq.chimeric.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.chimeric.gdc_realn.bam 243130979 BAM chimeric harmonized CPTAC3 6bcd98ba-6abc-4625-92d7-8b015c96dbdf a349c46ec1ee62785c3adada350ee687 {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.chimeric.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.chimeric.gdc_realn.bam 304343179 BAM chimeric harmonized CPTAC3 86d41375-9143-4cd4-80e9-eeecdc179428 6a6ec353fe2fed89d4230423bba70ac9 {"aliquot_tag": "ALQ_985c98ea", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.genomic.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.genomic.gdc_realn.bam 10066741228 BAM genomic harmonized CPTAC3 5253c934-f70f-4294-9f95-8b9b34b4e6cb 475d07a98543a4c71b0457af7a8b16c9 {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.RNA-Seq.genomic.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.genomic.gdc_realn.bam 8425441738 BAM genomic harmonized CPTAC3 fc5fb0ff-5714-4c2a-bde2-b4ef49a92da3 ddef0b4cdf2a03840fe6ec45d8164d2a {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.genomic.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.genomic.gdc_realn.bam 14498171190 BAM genomic harmonized CPTAC3 5cc2500a-6943-4788-85c2-f2b93c6ae64e 98a61abb80e803710967079d4dd25214 {"aliquot_tag": "ALQ_985c98ea", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.S13_R1.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R1_001.fastq.gz 9435825392 FASTQ S13_R1 unaligned CPTAC3 0a8ade79-263c-401b-b1ad-818f16174c33 a885d4892177bcbb0de34ae6d2ba7d4d {"aliquot_tag": "ALQ_985c98ea", "sample": "S13", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.S13_R2.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R2_001.fastq.gz 9734138521 FASTQ S13_R2 unaligned CPTAC3 4ef61294-47e2-4b19-98d0-b0446e38bc17 2529defc43f78d84c6b2eeaee739f86a {"aliquot_tag": "ALQ_985c98ea", "sample": "S13", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.S3_L001_R1.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R1_001.fastq.gz 4852855256 FASTQ S3_L001_R1 unaligned CPTAC3 f660d943-e7c6-4666-96f6-ec0ff54b1a9b 050d6dc5bd7041e9f182b731c4299d61 {"aliquot_tag": "ALQ_1766c057", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.RNA-Seq.S3_L001_R2.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R2_001.fastq.gz 4679196011 FASTQ S3_L001_R2 unaligned CPTAC3 2e940f03-221f-44bc-a712-f5f4c622d928 c06277115f77c9d32efe22343ca34f49 {"aliquot_tag": "ALQ_1766c057", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.RNA-Seq.S4_L007_R1.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3981198765 FASTQ S4_L007_R1 unaligned CPTAC3 8b942ced-227d-40f5-93ba-1b1cb81c9497 ed250e7329b4abed7a70bd4f448388b2 {"aliquot_tag": "ALQ_2a06e9e7", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.S4_L007_R2.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R2_001.fastq.gz 4133665413 FASTQ S4_L007_R2 unaligned CPTAC3 67e463f4-543c-462a-84ed-3b8e12491b11 93ba9399da90084521df346ab4603ec5 {"aliquot_tag": "ALQ_2a06e9e7", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.transcriptome.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.transcriptome.gdc_realn.bam 12049916146 BAM transcriptome harmonized CPTAC3 2b65e074-f563-42ad-9cf5-1b6a8b431e29 aab6d9d1a107d800e8ba8e249ee804f3 {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.RNA-Seq.transcriptome.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.transcriptome.gdc_realn.bam 11134775716 BAM transcriptome harmonized CPTAC3 540d8dfe-149d-46cf-93ef-f27686027da6 e6e736ca4c4640ae4a9231487e692ff0 {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor"} -C3N-01944.RNA-Seq.transcriptome.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.transcriptome.gdc_realn.bam 9163979622 BAM transcriptome harmonized CPTAC3 0fc58d89-7d99-4eac-90c2-d450d623ff66 b3c6b1f883044d0e9ed4ef1bd454b804 {"aliquot_tag": "ALQ_985c98ea", "gdc_sample_type": "Primary Tumor"} -C3N-01944.WGS.N C3N-01944 HNSCC WGS blood_normal CPT0163520002 CPT0163520002.WholeGenome.RP-1303.bam 80826084042 BAM aligned CPTAC3 3d06f871-92ea-47d8-b715-a192e777e003 35ce4795ba0c184e93ba0e4a9a63e1d7 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01944.WGS.N.hg38 C3N-01944 HNSCC WGS blood_normal CPT0163520002 bf73b92d-dc07-472d-8e9a-199f94d96ebd_wgs_gdc_realn.bam 121021014190 BAM harmonized CPTAC3 57855f1a-f4e4-4a7c-a22d-a74033ebbc12 0e2c8d5c7eeb401d909edf6612da8131 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01944.WGS.T C3N-01944 HNSCC WGS tumor CPT0163480006 CPT0163480006.WholeGenome.RP-1303.bam 67603844591 BAM aligned CPTAC3 b6f2d9d9-655c-4d31-ac82-d2a38af20829 4d36d4034fa492c1b8fbfa232590523c {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor"} -C3N-01944.WGS.T.hg38 C3N-01944 HNSCC WGS tumor CPT0163480006 61be022c-97c6-4c1a-a9dd-998b5612ceee_wgs_gdc_realn.bam 100829263136 BAM harmonized CPTAC3 b2f8e522-34b6-4a9c-a669-a4e694020abd eb3ac9f831bf23c14e50ff1c6b950eaf {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor"} -C3N-01944.WXS.A C3N-01944 HNSCC WXS tissue_normal CPT0163490006 CPT0163490006.WholeExome.RP-1303.bam 24948487101 BAM aligned CPTAC3 0e85e4a6-1f3e-47c1-8877-57e99750e29f 0f0ea692d101ced2828e355cfe030eb6 {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.WXS.A.hg38 C3N-01944 HNSCC WXS tissue_normal CPT0163490006 b888f2c8-4a4d-403a-be21-3d85260a9870_wxs_gdc_realn.bam 34578210865 BAM harmonized CPTAC3 69d6fdc0-a661-4fc4-b344-449d76dfed89 42f872dc0f2e1f94c9034496b324c20b {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01944.WXS.N C3N-01944 HNSCC WXS blood_normal CPT0163520002 CPT0163520002.WholeExome.RP-1303.bam 22996005347 BAM aligned CPTAC3 4be2d1d5-9dda-4bb3-9fa8-4195098be1ab c3e2908a2761d633779e3a5da22e88d5 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01944.WXS.N.hg38 C3N-01944 HNSCC WXS blood_normal CPT0163520002 bf73b92d-dc07-472d-8e9a-199f94d96ebd_wxs_gdc_realn.bam 31677582751 BAM harmonized CPTAC3 76312e51-1647-4ee7-8a5d-11064ab11956 d46f26ded059ac42b4d25e3b5ec5b1c8 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01944.WXS.T C3N-01944 HNSCC WXS tumor CPT0163480006 CPT0163480006.WholeExome.RP-1303.bam 26186219778 BAM aligned CPTAC3 f0c23857-ee0e-4ead-a89e-b9ede653f4e2 dbebe133f4cd623050cb11b82c81df9b {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor"} -C3N-01944.WXS.T.hg38 C3N-01944 HNSCC WXS tumor CPT0163480006 61be022c-97c6-4c1a-a9dd-998b5612ceee_wxs_gdc_realn.bam 35574372121 BAM harmonized CPTAC3 57cb4016-b15d-4c69-b337-0bd82c51fab5 0cc491a9a973101ea05d8a0f9e2c9ed4 {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor"} -C3N-01945.MethArray.Green.T C3N-01945 HNSCC Methylation_Array tumor CPT0163530006 203220070102_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 11a05d0f-5cfb-4372-8f45-9238dcebd95e cc3d80887ec84d85eefae44fdd6d7c62 {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor"} -C3N-01945.MethArray.Red.T C3N-01945 HNSCC Methylation_Array tumor CPT0163530006 203220070102_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 d6207231-a0c3-464d-b40f-e3edbc0b2ec9 c28cb7e56786b0c44e25dc1eda93d22d {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor"} -C3N-01945.miRNA-Seq.S29_L002_R1.T C3N-01945 HNSCC miRNA-Seq tumor CPT0163530009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L002_R1_001.unaln.bam 232473800 BAM S29_L002_R1 unaligned CPTAC3 76260373-fbdc-4c92-936a-2677883786f0 0cdaf5055ce2f107220f31e1aec1ce75 {"aliquot_tag": "ALQ_968a0b53", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01945.miRNA-Seq.T.hg38 C3N-01945 HNSCC miRNA-Seq tumor CPT0163530009 609d920c-5469-4264-a1a2-76fd0bcd69d5_mirnaseq_gdc_realn.bam 258862170 BAM harmonized CPTAC3 dbd43cd3-aace-4ea5-917d-eeb51ccab2e1 3f14d578e4b98b40849a449d13e5ea0d {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor"} -C3N-01945.RNA-Seq.chimeric.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.chimeric.gdc_realn.bam 213255068 BAM chimeric harmonized CPTAC3 0a56ef37-8e8d-4004-9f13-3e1552718932 d0677ac87a1b2fb024b10ba4e3590c6f {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor"} -C3N-01945.RNA-Seq.genomic.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.genomic.gdc_realn.bam 7952140532 BAM genomic harmonized CPTAC3 e6428da2-977a-44dd-82e3-f410d50bad20 53698d79b3365e3207f9c94f2d21bc04 {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor"} -C3N-01945.RNA-Seq.S5_L008_R1.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3531878135 FASTQ S5_L008_R1 unaligned CPTAC3 fb578361-069b-4669-b06d-d5a645375596 46f596f38de750feb395d76ebc568672 {"aliquot_tag": "ALQ_968a0b53", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01945.RNA-Seq.S5_L008_R2.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3892965269 FASTQ S5_L008_R2 unaligned CPTAC3 8d79172c-3f63-4c2e-847e-5da91b1b22b3 959aa20d1e43c753d37d95287600923f {"aliquot_tag": "ALQ_968a0b53", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01945.RNA-Seq.transcriptome.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.transcriptome.gdc_realn.bam 9626989171 BAM transcriptome harmonized CPTAC3 be232ceb-74ad-4fb5-8209-a360f3ee2ef0 4d7338bf841012a0de22040b0b3c3328 {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor"} -C3N-01945.WGS.N C3N-01945 HNSCC WGS blood_normal CPT0163590002 CPT0163590002.WholeGenome.RP-1303.bam 62241006496 BAM aligned CPTAC3 9ca771bc-65e9-4050-b766-0e89878c97b1 6a8bd12ec3a746da7363c1842313ff04 {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01945.WGS.N.hg38 C3N-01945 HNSCC WGS blood_normal CPT0163590002 b5b1502d-305a-443a-ad82-76c9d2ea459b_wgs_gdc_realn.bam 91102003657 BAM harmonized CPTAC3 91fd0430-e5b7-4e81-b770-4772b9009448 10caba31cad3cd4879fca08c37edd52f {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01945.WGS.T C3N-01945 HNSCC WGS tumor CPT0163530006 CPT0163530006.WholeGenome.RP-1303.bam 69531665043 BAM aligned CPTAC3 d9c5e2c9-17c2-4afb-9b3e-00005495f0c0 d3ad9207f40e72a27522204867009c5d {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor"} -C3N-01945.WGS.T.hg38 C3N-01945 HNSCC WGS tumor CPT0163530006 060eb50a-3094-46f9-9bd7-d314b69dcaef_wgs_gdc_realn.bam 103425570126 BAM harmonized CPTAC3 40ecf316-4e7b-417b-8f68-03eefa00bf9f ca26fd4ba5de399c19b1357b10f5a7eb {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor"} -C3N-01945.WXS.N C3N-01945 HNSCC WXS blood_normal CPT0163590002 CPT0163590002.WholeExome.RP-1303.bam 20711988706 BAM aligned CPTAC3 8c855828-d29d-4a86-be55-0178a999a27f e7a17282ae39fc39439a41ef50cfe7a6 {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01945.WXS.N.hg38 C3N-01945 HNSCC WXS blood_normal CPT0163590002 b5b1502d-305a-443a-ad82-76c9d2ea459b_wxs_gdc_realn.bam 28160281334 BAM harmonized CPTAC3 2fe8a099-e51f-4b2a-9422-a9aa7744bdd2 979c581bd47bb498d0fd910a2946d306 {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal"} -C3N-01945.WXS.T C3N-01945 HNSCC WXS tumor CPT0163530006 CPT0163530006.WholeExome.RP-1303.bam 30676270597 BAM aligned CPTAC3 e76d4700-b3e1-40f1-92b2-ceb2342736e6 1b1095a08cd261629ffa0040a586e397 {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor"} -C3N-01945.WXS.T.hg38 C3N-01945 HNSCC WXS tumor CPT0163530006 060eb50a-3094-46f9-9bd7-d314b69dcaef_wxs_gdc_realn.bam 42208604680 BAM harmonized CPTAC3 7a0fa70f-bb3b-4a4f-a9ba-01d71f712de0 6f088398fb328c6620e8422adeea0cd0 {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor"} -C3N-01946.MethArray.Green.T C3N-01946 HNSCC Methylation_Array tumor CPT0163600006 203271750010_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 90ada2a7-7bff-4877-8b10-7af2da6645e1 226b7f5f32e81334573e3ac5200ce6e4 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor"} -C3N-01946.MethArray.Red.T C3N-01946 HNSCC Methylation_Array tumor CPT0163600006 203271750010_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 fb3bef46-ba36-4431-beb0-bac85adc50f8 a7e449fac5e523e069275294b484ab5c {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor"} -C3N-01946.miRNA-Seq.A.hg38 C3N-01946 HNSCC miRNA-Seq tissue_normal CPT0163610006 121dd92b-fadd-494e-9bdf-69b3254e39b4_mirnaseq_gdc_realn.bam 267836189 BAM harmonized CPTAC3 a2d4a109-9331-4349-a66a-267f49eda9b2 862b37bf70a7d9aa2895dfe172d4fffe {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01946.miRNA-Seq.S15_L001_R1.A C3N-01946 HNSCC miRNA-Seq tissue_normal CPT0163610006 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGTCA_S15_L001_R1_001.unaln.bam 239504639 BAM S15_L001_R1 unaligned CPTAC3 240b34b5-da58-4c4e-bf09-84d2b2f1d1cc 53027c8b7bd93edd31a3ac9fec50bc05 {"aliquot_tag": "ALQ_fa61370c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01946.miRNA-Seq.S30_L002_R1.T C3N-01946 HNSCC miRNA-Seq tumor CPT0163600009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L002_R1_001.unaln.bam 197117257 BAM S30_L002_R1 unaligned CPTAC3 a907b5eb-7495-4d86-9f08-d6e6e77d7894 35925c52869f6b9564fac281f327fafa {"aliquot_tag": "ALQ_57be032d", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01946.miRNA-Seq.T.hg38 C3N-01946 HNSCC miRNA-Seq tumor CPT0163600009 0325a52b-47c9-4957-af75-4af5ba192469_mirnaseq_gdc_realn.bam 219558353 BAM harmonized CPTAC3 667f9176-5935-4e29-babd-e75817f72b94 918cee3d11ea2007188e02b0a6d1239b {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor"} -C3N-01946.RNA-Seq.chimeric.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.chimeric.gdc_realn.bam 155150359 BAM chimeric harmonized CPTAC3 6b933ffb-99b7-4a4d-b90e-66fe45dfbc84 778d388bb3c42b6607cc8bd2537dcaf5 {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01946.RNA-Seq.chimeric.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.chimeric.gdc_realn.bam 227007587 BAM chimeric harmonized CPTAC3 7284cf8e-ced6-4ccf-93b9-ccd5b94c4403 be94e7e3b2d8bd6873b2566a89782e2d {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor"} -C3N-01946.RNA-Seq.genomic.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.genomic.gdc_realn.bam 7926979078 BAM genomic harmonized CPTAC3 9c6c9de1-2716-4a8d-9457-b25b09612294 d7d3c3632bcbd17b6a2a5d7b806b8750 {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01946.RNA-Seq.genomic.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.genomic.gdc_realn.bam 8618004500 BAM genomic harmonized CPTAC3 143366f3-a628-42e0-b2a6-03c1942e7567 b971f141643a493d4a00e5c74cdd4e0c {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor"} -C3N-01946.RNA-Seq.S13_L004_R1.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3945942467 FASTQ S13_L004_R1 unaligned CPTAC3 a285fcf1-9433-4838-8e18-5b7ccc18fb9c f9e3461ff12ef5e81ba9e335bd899c17 {"aliquot_tag": "ALQ_fa61370c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01946.RNA-Seq.S13_L004_R2.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 4297857904 FASTQ S13_L004_R2 unaligned CPTAC3 8d3692b0-d5ff-4d77-9fde-91092760a0f7 afa78feb14f01dd122344d6c8b3b9f0e {"aliquot_tag": "ALQ_fa61370c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01946.RNA-Seq.S6_L008_R1.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3961254197 FASTQ S6_L008_R1 unaligned CPTAC3 4bef631b-a878-4d66-8e2f-6ff73688b407 b0b49801bc3a97d4ed25a191bdfebadd {"aliquot_tag": "ALQ_57be032d", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01946.RNA-Seq.S6_L008_R2.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4389235898 FASTQ S6_L008_R2 unaligned CPTAC3 7a0b9a04-7dbd-4621-bd40-5c0b3a812c27 94519e842427eb56f6d19516a00680da {"aliquot_tag": "ALQ_57be032d", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01946.RNA-Seq.transcriptome.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.transcriptome.gdc_realn.bam 11125454531 BAM transcriptome harmonized CPTAC3 bd25bdf7-aaa9-46fb-91d5-825226344c6b df8c82e26ae7d496718290d0c24d74ad {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01946.RNA-Seq.transcriptome.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.transcriptome.gdc_realn.bam 11116238276 BAM transcriptome harmonized CPTAC3 01661503-be95-4951-aa50-39b0a87f6343 1bfe45477c04dd7751ec9e37e95c5440 {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor"} -C3N-01946.WGS.N C3N-01946 HNSCC WGS blood_normal CPT0163640002 CPT0163640002.WholeGenome.RP-1303.bam 66088027627 BAM aligned CPTAC3 0a98bc63-79e5-4c0d-9534-3f3ffb72682d c185c5e9e18eeb047915bacc1ab3f6fc {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal"} -C3N-01946.WGS.N.hg38 C3N-01946 HNSCC WGS blood_normal CPT0163640002 390eb714-780f-4954-928b-792da90b82b6_wgs_gdc_realn.bam 97724134907 BAM harmonized CPTAC3 7ff9d781-7c61-4f2d-8a5b-a456078be6c1 513cabb73c50b823506afe61eaef6be4 {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal"} -C3N-01946.WGS.T C3N-01946 HNSCC WGS tumor CPT0163600006 CPT0163600006.WholeGenome.RP-1303.bam 70863339905 BAM aligned CPTAC3 16db9b10-7cc1-4a89-bb20-96ae6bb2e2d3 c50acb3b9e90dd524333911f6a73b3b2 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor"} -C3N-01946.WGS.T.hg38 C3N-01946 HNSCC WGS tumor CPT0163600006 48eaf6f1-9011-499d-bf9c-897fbaf8c623_wgs_gdc_realn.bam 101842741936 BAM harmonized CPTAC3 8caf2e9e-208b-43c2-aae1-c979e4bea753 70570edb7920ffcd2d34da544fb3a319 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor"} -C3N-01946.WXS.N C3N-01946 HNSCC WXS blood_normal CPT0163640002 CPT0163640002.WholeExome.RP-1303.bam 26838820646 BAM aligned CPTAC3 5df5dd93-4eca-475c-801c-28f7cc6f89c7 d320c72f0a92fc115a954385b90a22b1 {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal"} -C3N-01946.WXS.N.hg38 C3N-01946 HNSCC WXS blood_normal CPT0163640002 390eb714-780f-4954-928b-792da90b82b6_wxs_gdc_realn.bam 36424769818 BAM harmonized CPTAC3 84b054b6-9984-44f2-9c80-f50f4f0599da c9bf03ef15fd52f823d739dc075d658f {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal"} -C3N-01946.WXS.T C3N-01946 HNSCC WXS tumor CPT0163600006 CPT0163600006.WholeExome.RP-1303.bam 23676146676 BAM aligned CPTAC3 4216f7d9-60eb-4a0d-a7e4-09f312ef1a5c c91f40f17e86c9e33bad778a7f4172d3 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor"} -C3N-01946.WXS.T.hg38 C3N-01946 HNSCC WXS tumor CPT0163600006 48eaf6f1-9011-499d-bf9c-897fbaf8c623_wxs_gdc_realn.bam 32592280041 BAM harmonized CPTAC3 82841608-b7e3-489e-877b-f606cf6288fb f3d0458b25e242fffcf4418a209801a1 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor"} -C3N-01947.MethArray.Green.A C3N-01947 HNSCC Methylation_Array tissue_normal CPT0226090006 203271740101_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 bf7d7394-0448-48d7-ac28-51197bf3dac6 9744d598f2110ad8ddf5db452f235895 {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.MethArray.Green.T C3N-01947 HNSCC Methylation_Array tumor CPT0226030006 203273200155_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8e6b4f75-cbbb-46ce-8bb3-8ba95d6d87a0 c6c4870b35e0c899e483205a19ce15f3 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor"} -C3N-01947.MethArray.Red.A C3N-01947 HNSCC Methylation_Array tissue_normal CPT0226090006 203271740101_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 ec559ff2-ea20-4260-b04c-0c51eadc16ef 413ed56f448a37b61248476a67d1626c {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.MethArray.Red.T C3N-01947 HNSCC Methylation_Array tumor CPT0226030006 203273200155_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 370cce25-2497-4eea-8b6c-36f96bb1c124 5639dd5449cada6bc1b72d25cc3e21ca {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor"} -C3N-01947.miRNA-Seq.A.hg38 C3N-01947 HNSCC miRNA-Seq tissue_normal CPT0226090009 f5541581-ea3b-4a4d-976e-ac2299918e33_mirnaseq_gdc_realn.bam 284313593 BAM harmonized CPTAC3 47d62272-35c7-4679-8397-51a544648db2 69edab7ff582822f5be856e6f8d45296 {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.miRNA-Seq.S44_L004_R1.T C3N-01947 HNSCC miRNA-Seq tumor CPT0226030009 190228_UNC32-K00270_0151_AHYLY3BBXX_TATAAT_S44_L004_R1_001.unaln.bam 301353967 BAM S44_L004_R1 unaligned CPTAC3 288508d8-eead-4c3c-b78b-7a87826c45ae 0633427f977d8bb5d945bc7f7424197c {"aliquot_tag": "ALQ_29b88778", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01947.miRNA-Seq.S7_L005_R1.A C3N-01947 HNSCC miRNA-Seq tissue_normal CPT0226090009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L005_R1_001.unaln.bam 249741580 BAM S7_L005_R1 unaligned CPTAC3 7fa77ad4-1abf-4f48-9e95-11cbe075acc8 01fa5fffa0ec393a4baf55d9ce114da5 {"aliquot_tag": "ALQ_63089fd9", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.miRNA-Seq.T.hg38 C3N-01947 HNSCC miRNA-Seq tumor CPT0226030009 eaa8b65b-bd8e-4271-933b-2c2c617a546d_mirnaseq_gdc_realn.bam 334091792 BAM harmonized CPTAC3 0a16aae8-c5eb-4ec3-bdcd-7c754586fe43 72044d9522b02b26ecc0282f0d252a0d {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.chimeric.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.chimeric.gdc_realn.bam 74641115 BAM chimeric harmonized CPTAC3 582945a7-1359-4d0f-8872-4be6ec1a56cd 7d97176b413b9134d3802b6d5ec612e5 {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.RNA-Seq.chimeric.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.chimeric.gdc_realn.bam 189925120 BAM chimeric harmonized CPTAC3 7f72bbc7-e655-4396-80b4-768815748dd0 ff2fe877d96c99999ae3f256b205b2e2 {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.chimeric.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.chimeric.gdc_realn.bam 163855292 BAM chimeric harmonized CPTAC3 a550e5c1-5073-430c-8a7b-4c9f8359a09f 4a247b1a369027c214fd98445f344456 {"aliquot_tag": "ALQ_1a1e8ec1", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.genomic.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.genomic.gdc_realn.bam 9295755367 BAM genomic harmonized CPTAC3 0445d0f1-fc4b-48f0-ab75-ace4e783adfa ab55313ab24724a197757f62359adfbb {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.RNA-Seq.genomic.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.genomic.gdc_realn.bam 7756893982 BAM genomic harmonized CPTAC3 2785a40f-d7fc-4245-8c0d-e64c26db338d 17ea94ee5c3c4761eaaefb57fa6ff2d6 {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.genomic.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.genomic.gdc_realn.bam 11234328692 BAM genomic harmonized CPTAC3 c80e1b06-f572-438a-b50b-caca1aaa3f7f 4f09082684cb220eaab86c3c21f6cd64 {"aliquot_tag": "ALQ_1a1e8ec1", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.S20_L004_R1.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R1_001.fastq.gz 4514614104 FASTQ S20_L004_R1 unaligned CPTAC3 ca3f3f40-2a1c-43fd-8acf-ecac3664de15 e03a435dc096200dec0b475bbf4e0ecb {"aliquot_tag": "ALQ_63089fd9", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.RNA-Seq.S20_L004_R2.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R2_001.fastq.gz 5046170026 FASTQ S20_L004_R2 unaligned CPTAC3 91673d4f-c639-4c8d-9656-744ca4f63274 298886128322637af444bfb6a002bd68 {"aliquot_tag": "ALQ_63089fd9", "sample": "S20", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.RNA-Seq.S81_R1.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R1_001.fastq.gz 6855828658 FASTQ S81_R1 unaligned CPTAC3 14e1d23e-8f61-4178-ba06-3ef2be77ee67 6daab72f340870e6f55d3ee719030162 {"aliquot_tag": "ALQ_1a1e8ec1", "sample": "S81", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.S81_R2.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R2_001.fastq.gz 6980248291 FASTQ S81_R2 unaligned CPTAC3 659107b5-4ad8-4ada-89f9-6e73024c0a67 6188dce87cf11b70bb58d211f4141e94 {"aliquot_tag": "ALQ_1a1e8ec1", "sample": "S81", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.S9_L007_R1.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R1_001.fastq.gz 3553427117 FASTQ S9_L007_R1 unaligned CPTAC3 4f5c86dc-d9e9-4143-8559-2f2aa8a0e91e b9d7ca70149836e3dbc82a493db3c230 {"aliquot_tag": "ALQ_29b88778", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.S9_L007_R2.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R2_001.fastq.gz 4125349541 FASTQ S9_L007_R2 unaligned CPTAC3 1c643fde-ac15-4035-8d06-d1417ae3c02c 20acdeba7718a75b0c55d4bc917653e0 {"aliquot_tag": "ALQ_29b88778", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.transcriptome.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.transcriptome.gdc_realn.bam 13270113918 BAM transcriptome harmonized CPTAC3 a015852f-6dda-448a-8754-fa9163ed2f87 6919a97b4001eb504ec94938fdb49aa6 {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.RNA-Seq.transcriptome.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.transcriptome.gdc_realn.bam 10844854391 BAM transcriptome harmonized CPTAC3 b7db540a-067a-458d-bccc-5584e91f777e e973aedb591e39245817019505bdc446 {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor"} -C3N-01947.RNA-Seq.transcriptome.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.transcriptome.gdc_realn.bam 6690276127 BAM transcriptome harmonized CPTAC3 5aceb83d-37a2-4b39-a697-0a6037dc5145 5f7750651c6d788297128347136ea937 {"aliquot_tag": "ALQ_1a1e8ec1", "gdc_sample_type": "Primary Tumor"} -C3N-01947.WGS.N C3N-01947 HNSCC WGS blood_normal CPT0226120002 CPT0226120002.WholeGenome.RP-1303.bam 71999240052 BAM aligned CPTAC3 cee9e59d-7d3e-4bd9-acbd-7855603bedc8 1ca2005ae0f1612faf5ee30368035046 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01947.WGS.N.hg38 C3N-01947 HNSCC WGS blood_normal CPT0226120002 38f4020d-3686-4770-b2b0-8fe846b0ea68_wgs_gdc_realn.bam 104976381395 BAM harmonized CPTAC3 3eb615ce-5721-46ad-b191-b45e612e7ff0 ef4b9aceca029b63730012ce3cfcccd5 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01947.WGS.T C3N-01947 HNSCC WGS tumor CPT0226030006 CPT0226030006.WholeGenome.RP-1303.bam 81844887395 BAM aligned CPTAC3 082b1a05-87f4-49d0-a1a3-21e88e31cc87 7806d1559656bd7c087a34094164941a {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor"} -C3N-01947.WGS.T.hg38 C3N-01947 HNSCC WGS tumor CPT0226030006 5aaff976-9620-4d11-ab21-3ebe72ea590e_wgs_gdc_realn.bam 121489047782 BAM harmonized CPTAC3 426887e9-3e16-4e9b-b0ff-bbac82dd534b 86acb84315b914c332ca7ef54fdcfc26 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor"} -C3N-01947.WXS.A C3N-01947 HNSCC WXS tissue_normal CPT0226090006 CPT0226090006.WholeExome.RP-1303.bam 23053957708 BAM aligned CPTAC3 0f02d470-80ff-46d6-b38a-fff54d593c98 9fc05590f2d86d858d2bc18a03bb9bc6 {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.WXS.A.hg38 C3N-01947 HNSCC WXS tissue_normal CPT0226090006 b2afae54-3e46-4ccd-b997-41e6370b4acb_wxs_gdc_realn.bam 31699179453 BAM harmonized CPTAC3 50d91f11-2d86-4489-9cf5-bd34ca377975 89e3e28ab939e3ef77605bf25a6ca720 {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01947.WXS.N C3N-01947 HNSCC WXS blood_normal CPT0226120002 CPT0226120002.WholeExome.RP-1303.bam 23695112382 BAM aligned CPTAC3 e1694fcc-b966-48bf-b470-96672f167b40 fed732a644fbb8b8576a62cfe9632d37 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01947.WXS.N.hg38 C3N-01947 HNSCC WXS blood_normal CPT0226120002 38f4020d-3686-4770-b2b0-8fe846b0ea68_wxs_gdc_realn.bam 32894042269 BAM harmonized CPTAC3 18933760-3ca0-45db-b306-22ced8c511c7 7eaa6a1ed70ae50e8af1028d4b996a41 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-01947.WXS.T C3N-01947 HNSCC WXS tumor CPT0226030006 CPT0226030006.WholeExome.RP-1303.bam 28759435238 BAM aligned CPTAC3 187233e5-35a7-4767-934f-7de9d5d1b411 c7deb37ff33b2b45b61c8c27dea2d9b5 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor"} -C3N-01947.WXS.T.hg38 C3N-01947 HNSCC WXS tumor CPT0226030006 5aaff976-9620-4d11-ab21-3ebe72ea590e_wxs_gdc_realn.bam 39542294343 BAM harmonized CPTAC3 b2aca2b0-8e2d-4bfa-9196-8b00e7ff85f3 6820b7f618ee44aa1616c73222ec8d14 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor"} -C3N-01948.MethArray.Green.T C3N-01948 HNSCC Methylation_Array tumor CPT0163650006 203219650071_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 2179edf4-cb1d-4da5-b8e8-87f9c1f7d399 7a8868bd470ba6776bc591439e7ea4e7 {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor"} -C3N-01948.MethArray.Red.T C3N-01948 HNSCC Methylation_Array tumor CPT0163650006 203219650071_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 68f6c3af-2e42-4dde-83c2-f6b0708d9033 11e1783a497f6790e09d18c1a8dea3ff {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor"} -C3N-01948.miRNA-Seq.A.hg38 C3N-01948 HNSCC miRNA-Seq tissue_normal CPT0163670006 c8e9a357-28fa-4ffb-878a-561b9d5502fd_mirnaseq_gdc_realn.bam 280297813 BAM harmonized CPTAC3 00b83e00-4fe8-4211-a79b-aa6047b747ed 6408acdc915e82cc4b0d0e3e8534e405 {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01948.miRNA-Seq.S16_L001_R1.A C3N-01948 HNSCC miRNA-Seq tissue_normal CPT0163670006 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L001_R1_001.unaln.bam 244314862 BAM S16_L001_R1 unaligned CPTAC3 4731cff6-d0b5-4c0b-8b79-d1dbfcc435ac c678147b1434f3209a49f2b660add028 {"aliquot_tag": "ALQ_7521c2ac", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01948.miRNA-Seq.S31_L002_R1.T C3N-01948 HNSCC miRNA-Seq tumor CPT0163650009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L002_R1_001.unaln.bam 239616852 BAM S31_L002_R1 unaligned CPTAC3 016e8b0a-f641-4742-8bea-107004dba1b1 81255ca78dc350098b73c3198b2b56c0 {"aliquot_tag": "ALQ_9f5e8c5d", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01948.miRNA-Seq.T.hg38 C3N-01948 HNSCC miRNA-Seq tumor CPT0163650009 5809c33b-a2de-422e-9146-1660a1c53afa_mirnaseq_gdc_realn.bam 263763481 BAM harmonized CPTAC3 f5068888-22f1-45a0-a30d-0d2dde2c04e6 2c17d8a226178a3bbfd4766b99e1be19 {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.chimeric.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.chimeric.gdc_realn.bam 104607426 BAM chimeric harmonized CPTAC3 264111fb-a67f-44f0-973a-6c6789a257f7 ef5060daf80b244f3c2a92e62808c84c {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01948.RNA-Seq.chimeric.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.chimeric.gdc_realn.bam 224807968 BAM chimeric harmonized CPTAC3 1ed06c59-6e8c-4fd5-a1f2-d29d00cc8d8f ef6b0a9b02a367bc1ef1b9881ab87064 {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.chimeric.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.chimeric.gdc_realn.bam 225962716 BAM chimeric harmonized CPTAC3 bae17bdc-dc11-4bc2-9a2d-4b0334cdba96 2ba1c76215428bc2d578a069a6702370 {"aliquot_tag": "ALQ_2444eb26", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.genomic.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.genomic.gdc_realn.bam 8273526545 BAM genomic harmonized CPTAC3 7afa1ba4-960a-44ae-9933-47979b3ad769 80109dc45dd14177229ad8d05d09aeaa {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01948.RNA-Seq.genomic.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.genomic.gdc_realn.bam 8584638397 BAM genomic harmonized CPTAC3 8de44ddd-ce91-4239-834f-3f0235338bdc 7606cd6c53c85af2a35d4c1915fba26c {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.genomic.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.genomic.gdc_realn.bam 12787746414 BAM genomic harmonized CPTAC3 7840ca3c-439c-413a-bb52-7c36e3518812 ffe5f26c6948c596f3632c5707c8dcc7 {"aliquot_tag": "ALQ_2444eb26", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.S18_L005_R1.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R1_001.fastq.gz 4007961238 FASTQ S18_L005_R1 unaligned CPTAC3 a57e46c4-1380-404f-bab0-d5b57b7b5d76 2e2f41f4263bc2170fb30fb0288e1f0e {"aliquot_tag": "ALQ_7521c2ac", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01948.RNA-Seq.S18_L005_R2.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R2_001.fastq.gz 3945256743 FASTQ S18_L005_R2 unaligned CPTAC3 bba9fb2f-9c78-4bd5-8b6e-ab7ff095854d 0b43ff5a1c0758f3db4adb6c1b988577 {"aliquot_tag": "ALQ_7521c2ac", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01948.RNA-Seq.S20_R1.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R1_001.fastq.gz 6907483238 FASTQ S20_R1 unaligned CPTAC3 019d4f1f-6d01-4c35-8b50-7d3e6fca8a28 704dfec0abbc486bedaee48a1fea4dab {"aliquot_tag": "ALQ_2444eb26", "sample": "S20", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.S20_R2.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R2_001.fastq.gz 7230206666 FASTQ S20_R2 unaligned CPTAC3 17773d4d-6dec-406b-8732-26a5c646cb61 2165bf5a6cf082bd2e92ffc60f43ac7f {"aliquot_tag": "ALQ_2444eb26", "sample": "S20", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.S8_L008_R1.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R1_001.fastq.gz 4052088988 FASTQ S8_L008_R1 unaligned CPTAC3 60cda52a-c7d2-4dcf-9b62-677ae7826510 27268a45a53d849abffbab9ab8ddabd5 {"aliquot_tag": "ALQ_9f5e8c5d", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.S8_L008_R2.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4504314877 FASTQ S8_L008_R2 unaligned CPTAC3 ff46082c-3142-4784-ac8f-225a494003ab 4f0b43e9824da100995fba67066a0ce7 {"aliquot_tag": "ALQ_9f5e8c5d", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.transcriptome.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.transcriptome.gdc_realn.bam 10166956283 BAM transcriptome harmonized CPTAC3 994cebdd-e1e4-4243-bb17-0ffcf4eb4f2a f0fde2b2515355814bc06df6733b0dd9 {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01948.RNA-Seq.transcriptome.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.transcriptome.gdc_realn.bam 11628552054 BAM transcriptome harmonized CPTAC3 1573b5b9-7c82-41d4-b9aa-be80aaa9086b b47cdd1a332a4710dec7b3aeb900a1df {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor"} -C3N-01948.RNA-Seq.transcriptome.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.transcriptome.gdc_realn.bam 7213530941 BAM transcriptome harmonized CPTAC3 206cb42e-9d2d-4230-ae2d-607a507807bc 7d36e044250637d992fe5a1de815c2a1 {"aliquot_tag": "ALQ_2444eb26", "gdc_sample_type": "Primary Tumor"} -C3N-01948.WGS.N C3N-01948 HNSCC WGS blood_normal CPT0163710002 CPT0163710002.WholeGenome.RP-1303.bam 55796566408 BAM aligned CPTAC3 ca5d1588-46c2-4b55-a902-43ef3a6273ef a1c600e5acce5f5b9754065ebcaa2ab3 {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01948.WGS.N.hg38 C3N-01948 HNSCC WGS blood_normal CPT0163710002 b04281f0-de7e-4330-b977-5149689f34ef_wgs_gdc_realn.bam 81701256504 BAM harmonized CPTAC3 4382318b-b7f8-4457-9641-07a9c232e427 b9e2368ee3e5603bbf8116ed7fe89fb6 {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01948.WGS.T C3N-01948 HNSCC WGS tumor CPT0163650006 CPT0163650006.WholeGenome.RP-1303.bam 86251464852 BAM aligned CPTAC3 9ff79dda-7cb6-4f15-ba73-734b876883c5 771a8f4c06dbd1ee81c8766400874b40 {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor"} -C3N-01948.WGS.T.hg38 C3N-01948 HNSCC WGS tumor CPT0163650006 5c9b7a28-b4f0-4576-be00-c401024ca6c6_wgs_gdc_realn.bam 128157211222 BAM harmonized CPTAC3 408935a5-697b-44ac-90e0-f3758cd39b96 a6767ddc465c3ca2afd5f73a94265d1e {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor"} -C3N-01948.WXS.N C3N-01948 HNSCC WXS blood_normal CPT0163710002 CPT0163710002.WholeExome.RP-1303.bam 23149741803 BAM aligned CPTAC3 5b69f8fd-d816-4adf-90fe-525c1ddcf5f6 7519afb282d8e63aa068c6e1baab1a88 {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01948.WXS.N.hg38 C3N-01948 HNSCC WXS blood_normal CPT0163710002 b04281f0-de7e-4330-b977-5149689f34ef_wxs_gdc_realn.bam 31690099940 BAM harmonized CPTAC3 2f036077-9582-4255-8874-8708f879fc3d b629d7356d6896cbf56b01e9db2c82fe {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-01948.WXS.T C3N-01948 HNSCC WXS tumor CPT0163650006 CPT0163650006.WholeExome.RP-1303.bam 26900134071 BAM aligned CPTAC3 4af5d558-88a4-42cf-9230-5fe31dbf0f64 32f4f52e995d6fceb2ab7811233ae564 {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor"} -C3N-01948.WXS.T.hg38 C3N-01948 HNSCC WXS tumor CPT0163650006 5c9b7a28-b4f0-4576-be00-c401024ca6c6_wxs_gdc_realn.bam 36665752671 BAM harmonized CPTAC3 b98ff843-e232-4c69-8ad9-57bc10e543fa fafbfa8368804b5637593633181ba19b {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor"} -C3N-01989.MethArray.Green.T C3N-01989 CCRCC Methylation_Array tumor CPT0112230009 203219650176_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 59650298-cabd-4fba-8260-a9c4f5e6e275 023d4ba14b860d5dc7337d84a867bc62 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor"} -C3N-01989.MethArray.Red.T C3N-01989 CCRCC Methylation_Array tumor CPT0112230009 203219650176_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 63a7a8d2-089c-4ee2-9891-2f7dbc8df9f9 ac473c0d4e2822dad0122814386650c9 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor"} -C3N-01989.miRNA-Seq.A.hg38 C3N-01989 CCRCC miRNA-Seq tissue_normal CPT0112240007 c460ed67-37a9-4fb7-ba48-29bc6f30354f_mirnaseq_gdc_realn.bam 233743845 BAM harmonized CPTAC3 0fc3bbb6-cb51-4c01-adb1-8401463ffcb9 1a169d75e72748e33af770f803ced298 {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01989.miRNA-Seq.S16_L002_R1.T C3N-01989 CCRCC miRNA-Seq tumor CPT0112230006 190108_UNC31-K00269_0176_AHYGLVBBXX_CCGTCC_S16_L002_R1_001.unaln.bam 238785987 BAM S16_L002_R1 unaligned CPTAC3 a9822ad8-0fd0-492d-bf9d-a48ab3c32bdb 7c5c38adbf0f4c7fe229759e4e780111 {"aliquot_tag": "ALQ_b78224d7", "sample": "S16", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01989.miRNA-Seq.S48_L005_R1.A C3N-01989 CCRCC miRNA-Seq tissue_normal CPT0112240007 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGGCA_S48_L005_R1_001.unaln.bam 212967817 BAM S48_L005_R1 unaligned CPTAC3 13a30f6b-0571-4cb6-9a33-42ce0dee8ea3 e705990dc4e9e2ded8884df2fbe9870d {"aliquot_tag": "ALQ_72a5c851", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01989.miRNA-Seq.T.hg38 C3N-01989 CCRCC miRNA-Seq tumor CPT0112230006 af52fa65-4ad7-4882-bb42-0764f896a3b9_mirnaseq_gdc_realn.bam 265616704 BAM harmonized CPTAC3 546fbc91-f7a6-44b3-a44d-66e143261877 e2e50a5842d7fd4544dcecfa9b814879 {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor"} -C3N-01989.RNA-Seq.chimeric.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.chimeric.gdc_realn.bam 35258362 BAM chimeric harmonized CPTAC3 42c9fcff-a5f0-465a-b019-7a44aa64fcf0 1aceb3f34730f1653ce46ab358c1cbef {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01989.RNA-Seq.chimeric.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.chimeric.gdc_realn.bam 36056168 BAM chimeric harmonized CPTAC3 e942654d-3c0e-4bca-88f4-2a31003c365d 10c09702411ec317364c10b369e2e2d3 {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor"} -C3N-01989.RNA-Seq.genomic.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.genomic.gdc_realn.bam 8889351115 BAM genomic harmonized CPTAC3 140827a1-f22b-4753-b426-a759f8f00446 8c1f5c81a504b59313fe3eb9f8dd7b4c {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01989.RNA-Seq.genomic.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.genomic.gdc_realn.bam 8444396734 BAM genomic harmonized CPTAC3 75d6875e-b81c-449a-83e3-7845960b4b0b c4ef769ae833f34692a4f3002f92505a {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor"} -C3N-01989.RNA-Seq.S4_L007_R1.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R1_001.fastq.gz 3924002741 FASTQ S4_L007_R1 unaligned CPTAC3 f5421d66-b130-4b37-9c56-a4b630cf8b1f f7e0b608137fe2f892dfd71bb3e4866f {"aliquot_tag": "ALQ_b78224d7", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01989.RNA-Seq.S4_L007_R2.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R2_001.fastq.gz 4045843004 FASTQ S4_L007_R2 unaligned CPTAC3 994ac653-5dea-46a6-8d78-5df97a55295a 49c6fd0595f34247326317a34a4e9b12 {"aliquot_tag": "ALQ_b78224d7", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01989.RNA-Seq.S79_L008_R1.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R1_001.fastq.gz 4159245734 FASTQ S79_L008_R1 unaligned CPTAC3 7dc76f2e-e4fe-48ed-ac8d-046863cb0071 825d1aa9e472abd5d249442fdcbc809e {"aliquot_tag": "ALQ_72a5c851", "sample": "S79", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01989.RNA-Seq.S79_L008_R2.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R2_001.fastq.gz 4333735532 FASTQ S79_L008_R2 unaligned CPTAC3 775bd14f-1502-47bb-93aa-e9fa6b4e8907 d079d0483e80f2fb25070aff48c318e3 {"aliquot_tag": "ALQ_72a5c851", "sample": "S79", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01989.RNA-Seq.transcriptome.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.transcriptome.gdc_realn.bam 10781865834 BAM transcriptome harmonized CPTAC3 fabc744e-5585-4e3a-a72e-6f0c29a01701 d643ae59fb540c55ef18bc133d9db073 {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01989.RNA-Seq.transcriptome.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.transcriptome.gdc_realn.bam 10523642081 BAM transcriptome harmonized CPTAC3 558c972f-8c3e-4869-b2ce-ae89bedc6b2f 3c65ad35b0222eb1f2cbed8bb2571809 {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor"} -C3N-01989.WGS.N C3N-01989 CCRCC WGS blood_normal CPT0112340002 CPT0112340002.WholeGenome.RP-1303.bam 62727726879 BAM aligned CPTAC3 2d5b16d3-0c8a-4c80-8211-7a99c8f5eef7 27706cd5e8be436532fcc31ce797ff77 {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01989.WGS.N.hg38 C3N-01989 CCRCC WGS blood_normal CPT0112340002 696e360d-4ead-4cec-bc8a-323b5e6cb854_wgs_gdc_realn.bam 89811356772 BAM harmonized CPTAC3 9d3b1a82-148a-459b-b73a-e9d436adc5bc 7ac747a3506ff4799579df94e0eee7cc {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01989.WGS.T C3N-01989 CCRCC WGS tumor CPT0112230009 CPT0112230009.WholeGenome.RP-1303.bam 79636519444 BAM aligned CPTAC3 6c876119-7180-4873-bd0c-0867630ccc55 85f6f872494391b3a02324b42a0865c3 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor"} -C3N-01989.WGS.T.hg38 C3N-01989 CCRCC WGS tumor CPT0112230009 9ec3dccb-a6c3-4d10-9647-2d4706ea98ae_wgs_gdc_realn.bam 113696066042 BAM harmonized CPTAC3 ef6231dc-75dd-4285-adc2-e07679ab03c1 32b98e91636bbe2ae8d10fd267660645 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor"} -C3N-01989.WXS.N C3N-01989 CCRCC WXS blood_normal CPT0112340002 CPT0112340002.WholeExome.RP-1303.bam 25279864694 BAM aligned CPTAC3 d05f6b44-dd08-46dc-b77e-f644d093004d a8a9bf398c50003bae86bae1d18472bd {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01989.WXS.N.hg38 C3N-01989 CCRCC WXS blood_normal CPT0112340002 696e360d-4ead-4cec-bc8a-323b5e6cb854_wxs_gdc_realn.bam 34608066561 BAM harmonized CPTAC3 41ddda8c-4bf9-4b8c-b739-09f95f792f62 d2e628692b7a3583ce3729f064debaed {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal"} -C3N-01989.WXS.T C3N-01989 CCRCC WXS tumor CPT0112230009 CPT0112230009.WholeExome.RP-1303.bam 24191229638 BAM aligned CPTAC3 fbc9d3d4-b21e-48ed-9021-fa01e50b3d39 be017622c1ec68e50885e2149d1943d5 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor"} -C3N-01989.WXS.T.hg38 C3N-01989 CCRCC WXS tumor CPT0112230009 9ec3dccb-a6c3-4d10-9647-2d4706ea98ae_wxs_gdc_realn.bam 32889682314 BAM harmonized CPTAC3 9a9ead26-c246-46ce-af13-3ad20b4e3561 ea7b688adf79dbbbf1e9e39f4659e67e {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor"} -C3N-01997.MethArray.Green.A C3N-01997 PDA Methylation_Array tissue_normal CPT0138890006 203561450046_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 89a08b00-af9c-4744-b184-aee780103eb5 3f6b6237c55b80cd154c81f4a3869e4b {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01997.MethArray.Green.T C3N-01997 PDA Methylation_Array tumor CPT0138900010 203219670066_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fcef483a-aab8-4ed3-9f6a-223da469aa1d ac76320c2c6f09fbdd3b61f342ffaae2 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor"} -C3N-01997.MethArray.Red.A C3N-01997 PDA Methylation_Array tissue_normal CPT0138890006 203561450046_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 7f7d432e-9640-44b7-a1ee-8a541ba9a66b 02f4ef331a6714916e62e7dca12cf6ac {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01997.MethArray.Red.T C3N-01997 PDA Methylation_Array tumor CPT0138900010 203219670066_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 ecc0c6c4-bf9d-44df-a8a8-9cdf4b3c4b4d fdcea905f79e36a720d68bf22c49008d {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor"} -C3N-01997.miRNA-Seq.S8_L001_R1.T C3N-01997 PDA miRNA-Seq tumor CPT0138900007 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L001_R1_001.unaln.bam 161987937 BAM S8_L001_R1 unaligned CPTAC3 f5d212e4-e0fd-4096-9fb7-2c96d4b77bf1 20cd172262dcc771ecf6047fe545929c {"aliquot_tag": "ALQ_bb7c661", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01997.miRNA-Seq.T.hg38 C3N-01997 PDA miRNA-Seq tumor CPT0138900007 405a77a1-3f89-43bc-aa70-9e2279a3f535_mirnaseq_gdc_realn.bam 182314514 BAM harmonized CPTAC3 58b5b8be-c1bd-4f07-84fa-f2b6da9e9f78 e047b91533d8938eaf6bc3cd87ee65f4 {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor"} -C3N-01997.RNA-Seq.chimeric.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.chimeric.gdc_realn.bam 90319347 BAM chimeric harmonized CPTAC3 cfe0f701-ab43-46c1-81f2-f62ee4aebb28 9be61252a22a0a307c8327b382ceffc7 {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor"} -C3N-01997.RNA-Seq.genomic.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.genomic.gdc_realn.bam 8865089730 BAM genomic harmonized CPTAC3 1e76776e-0234-4132-ac80-b02e2ef66464 26ea44862876768aa23d8d0a43338647 {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor"} -C3N-01997.RNA-Seq.S7_L007_R1.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R1_001.fastq.gz 4007138952 FASTQ S7_L007_R1 unaligned CPTAC3 177543fe-9718-4c49-bb13-0ec3f60ed071 5c99557e2e1b1de313742ccf60852fc6 {"aliquot_tag": "ALQ_bb7c661", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01997.RNA-Seq.S7_L007_R2.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R2_001.fastq.gz 4453037870 FASTQ S7_L007_R2 unaligned CPTAC3 f4c37175-17fd-4651-a5f0-fa665eb50b0c c535d62eedc0365628fc91a957bc2bb4 {"aliquot_tag": "ALQ_bb7c661", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01997.RNA-Seq.transcriptome.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.transcriptome.gdc_realn.bam 11581207585 BAM transcriptome harmonized CPTAC3 38e11053-6ce6-4e5d-8490-10273cef6bee 628880922a78d503041e17b80b86383e {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WGS.A C3N-01997 PDA WGS tissue_normal CPT0138890006 CPT0138890006.WholeGenome.RP-1303.bam 67950812923 BAM aligned CPTAC3 2a4e4309-037a-4d92-9fbb-bf9dbca0df14 770540fb88ba4c8b8143c421057e2585 {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01997.WGS.A.hg38 C3N-01997 PDA WGS tissue_normal CPT0138890006 843ad039-ed5b-423c-8328-51d2f31f1610_wgs_gdc_realn.bam 99385300021 BAM harmonized CPTAC3 0c39a9c7-eaa2-4948-9a7c-4db2b3ddfb87 88d9abae08842b64e0eaadd82e3ba52d {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01997.WGS.N C3N-01997 PDA WGS blood_normal CPT0138920002 CPT0138920002.WholeGenome.RP-1303.bam 66661887435 BAM aligned CPTAC3 61e81915-b2a2-474a-99f9-3280762b2ff2 6c9dfec9e9d0e346b98a82d47825b92a {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01997.WGS.N.hg38 C3N-01997 PDA WGS blood_normal CPT0138920002 391d63f2-9a50-4c5e-99c2-de8ab4715a43_wgs_gdc_realn.bam 96093024533 BAM harmonized CPTAC3 df60b3ea-48b8-4ecf-b5fa-8d457082303a d07f48b6ff16301348e0f93d12b95b78 {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01997.WGS.T C3N-01997 PDA WGS tumor CPT0138900010_1 CPT0138900010_1.WholeGenome.RP-1303.bam 124196101211 BAM aligned CPTAC3 cf56c670-5ad2-4da3-a2ad-1d5a15a4bdf9 533062d40c8925a4a3a514f1ca8c7d57 {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WGS.T C3N-01997 PDA WGS tumor CPT0138900010 CPT0138900010.WholeGenome.RP-1303.bam 56483933997 BAM aligned CPTAC3 11af7079-ecaa-4674-bc69-d4e3577b1890 cfc44fc7207e104db452b2936d99a599 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WGS.T.hg38 C3N-01997 PDA WGS tumor CPT0138900010_1 d74c1adc-cddf-49a1-a6ee-a6a65b6ed320_wgs_gdc_realn.bam 181010347994 BAM harmonized CPTAC3 9d8779cd-9d05-4a36-bc40-3ae7448538fd eb0077a1dd970d0f06e588de7e44d5aa {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WGS.T.hg38 C3N-01997 PDA WGS tumor CPT0138900010 39582c29-06d3-42eb-ba69-56b832e25378_wgs_gdc_realn.bam 83312656061 BAM harmonized CPTAC3 927c9bf1-c024-4f36-a619-d1eac7b5fb02 4e16cffac35aee45be03e6588af03e11 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WXS.A C3N-01997 PDA WXS tissue_normal CPT0138890006 CPT0138890006.WholeExome.RP-1303.bam 24048765974 BAM aligned CPTAC3 4afa91c2-ee57-423f-80b5-b6dd4b0decbf 3d2b27a212952cdeedd3371fc7df5da1 {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01997.WXS.A.hg38 C3N-01997 PDA WXS tissue_normal CPT0138890006 843ad039-ed5b-423c-8328-51d2f31f1610_wxs_gdc_realn.bam 32082363047 BAM harmonized CPTAC3 a69c171e-20c2-45cf-8164-d4af0ad8460a ec576015c149e65466f12e69394178cd {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01997.WXS.N C3N-01997 PDA WXS blood_normal CPT0138920002 CPT0138920002.WholeExome.RP-1303.bam 29359048555 BAM aligned CPTAC3 13e26585-0dbc-461b-a22e-61b556b0f2a2 6abf847c200ebb367f1d6195c3837d32 {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01997.WXS.N.hg38 C3N-01997 PDA WXS blood_normal CPT0138920002 391d63f2-9a50-4c5e-99c2-de8ab4715a43_wxs_gdc_realn.bam 39977633716 BAM harmonized CPTAC3 48c651f2-1e2c-4dd3-961b-a265e4f4b11e 42a579311bc45b0e80af7b7f39faa78d {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal"} -C3N-01997.WXS.T C3N-01997 PDA WXS tumor CPT0138900010_1 CPT0138900010_1.WholeExome.RP-1303.bam 49589167474 BAM aligned CPTAC3 7afcad68-e502-4c1d-a76c-cb0e7275e097 68be94fcabbb668934a75f08a350e3e4 {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WXS.T C3N-01997 PDA WXS tumor CPT0138900010 CPT0138900010.WholeExome.RP-1303.bam 26049169606 BAM aligned CPTAC3 31056264-a20c-43b1-9218-d27b6baee4e7 881be75aac1e329475674f680684b376 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WXS.T.hg38 C3N-01997 PDA WXS tumor CPT0138900010_1 d74c1adc-cddf-49a1-a6ee-a6a65b6ed320_wxs_gdc_realn.bam 68096460372 BAM harmonized CPTAC3 8658b584-6db3-44b6-90f3-d1fc6a1bf216 eae864ae7cda10c735bb27991afb8a9a {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor"} -C3N-01997.WXS.T.hg38 C3N-01997 PDA WXS tumor CPT0138900010 39582c29-06d3-42eb-ba69-56b832e25378_wxs_gdc_realn.bam 35385165928 BAM harmonized CPTAC3 cd70aa34-392f-4078-881d-cdb139d2a9df a34036c384b7e4007d83592791b342a0 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor"} -C3N-01998.MethArray.Green.A C3N-01998 PDA Methylation_Array tissue_normal CPT0138990006 203561450018_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e0971cc8-2322-4d63-a6a5-b64fa1ce6ddf a5be7e7bd619b16f734fc395479626c1 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.MethArray.Green.T C3N-01998 PDA Methylation_Array tumor CPT0139000010 203219650169_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a1d49124-a9bf-4262-a99e-b3e758622812 ba7314bca1f1007056b70fc7fd0e93a6 {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor"} -C3N-01998.MethArray.Red.A C3N-01998 PDA Methylation_Array tissue_normal CPT0138990006 203561450018_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 547adec6-7c3a-43ec-b991-c31e13e86281 aee30ec05cf52f2d118f2d1caa983fb2 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.MethArray.Red.T C3N-01998 PDA Methylation_Array tumor CPT0139000010 203219650169_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 5ed8b879-ddf9-4f31-8ac2-21c1c49adc54 22ba7e053946f7fcc7e61d040e6128fd {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor"} -C3N-01998.miRNA-Seq.A.hg38 C3N-01998 PDA miRNA-Seq tissue_normal CPT0138990009 02356a70-ccea-42e5-9607-33e049aa6bcf_mirnaseq_gdc_realn.bam 263247250 BAM harmonized CPTAC3 514a113a-e383-47ab-8437-eafe607de9a0 904754a7c744cb1fcb9be7bb07bd4083 {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.miRNA-Seq.S20_L001_R1.A C3N-01998 PDA miRNA-Seq tissue_normal CPT0138990009 181108_UNC31-K00269_0162_AH255GBBXY_TATAAT_S20_L001_R1_001.unaln.bam 238427106 BAM S20_L001_R1 unaligned CPTAC3 b65887d0-4102-4689-835b-d85e0fb2f08d ec0bd4d4f35fb6309700a9efb84c8711 {"aliquot_tag": "ALQ_e11f8917", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.miRNA-Seq.S9_L001_R1.T C3N-01998 PDA miRNA-Seq tumor CPT0139000007 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 174250403 BAM S9_L001_R1 unaligned CPTAC3 f50de58f-b9a0-4f61-9970-e0a4c842cc80 cc2c550008ea31392a485c724df6c69d {"aliquot_tag": "ALQ_8acf9c1d", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01998.miRNA-Seq.T.hg38 C3N-01998 PDA miRNA-Seq tumor CPT0139000007 b1ba44d4-0c64-46bb-8b32-fd5040ef4f9d_mirnaseq_gdc_realn.bam 192094303 BAM harmonized CPTAC3 3422b968-70b9-4f01-8ef4-09a15a01b1a9 03841e39aa19483769b89980149faf7b {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor"} -C3N-01998.RNA-Seq.chimeric.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.chimeric.gdc_realn.bam 65467010 BAM chimeric harmonized CPTAC3 51669134-27bd-416b-b366-8c9b1e9e0e9e 7468feb0555fbe0490e0d1fae3a73371 {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.RNA-Seq.chimeric.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.chimeric.gdc_realn.bam 51019455 BAM chimeric harmonized CPTAC3 1f4bd9be-f7a6-478e-9712-638685bb6e13 45708f595856777771d87710ae1aa2ac {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor"} -C3N-01998.RNA-Seq.genomic.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.genomic.gdc_realn.bam 8377515544 BAM genomic harmonized CPTAC3 9e197a28-a818-42ca-85a5-44f25cda2b31 7106fe12e6ed3855fe39c6fb6181452b {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.RNA-Seq.genomic.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.genomic.gdc_realn.bam 8616965326 BAM genomic harmonized CPTAC3 783f6a9a-45d1-4e11-833f-77ec22cc54a9 0eb83df046f393f1b37f9d531fc6e093 {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor"} -C3N-01998.RNA-Seq.S13_L004_R1.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 3590086088 FASTQ S13_L004_R1 unaligned CPTAC3 86882593-3b6f-4a79-af88-24a828c877a9 cb09c71ab525fc80712d5a5ef905d80d {"aliquot_tag": "ALQ_e11f8917", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.RNA-Seq.S13_L004_R2.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4051862046 FASTQ S13_L004_R2 unaligned CPTAC3 71c59940-7c95-484e-b602-535c759dc5aa c4fc725ea5575e5f12be43e0af38d3d9 {"aliquot_tag": "ALQ_e11f8917", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.RNA-Seq.S3_L007_R1.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R1_001.fastq.gz 3750856780 FASTQ S3_L007_R1 unaligned CPTAC3 d1e65a39-cf9b-4325-b009-467c2a0764db 336bef345f6405f22d6a86ff82b78e0e {"aliquot_tag": "ALQ_8acf9c1d", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-01998.RNA-Seq.S3_L007_R2.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R2_001.fastq.gz 4193596017 FASTQ S3_L007_R2 unaligned CPTAC3 509ab320-ebd9-47c5-9b16-df56783528ff ba1bb873efb210207f2bf1c03d342be3 {"aliquot_tag": "ALQ_8acf9c1d", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-01998.RNA-Seq.transcriptome.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.transcriptome.gdc_realn.bam 10253991590 BAM transcriptome harmonized CPTAC3 9ccc9971-edf6-4d30-96a6-6a8a87281b5d b136f065cc8850331175160909aa04fb {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.RNA-Seq.transcriptome.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.transcriptome.gdc_realn.bam 11220259980 BAM transcriptome harmonized CPTAC3 d484bd6d-488c-47b7-9dab-115af95ba638 d8ed1b3d88ca139ae62463f4b6f7f5cb {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WGS.A C3N-01998 PDA WGS tissue_normal CPT0138990006 CPT0138990006.WholeGenome.RP-1303.bam 64994527820 BAM aligned CPTAC3 4e574a51-05a5-4942-b116-a8d01cdabfd0 dec62d179c980690e7e224c02db79002 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.WGS.A.hg38 C3N-01998 PDA WGS tissue_normal CPT0138990006 fd6d58be-dde5-48a6-bd15-4fd540911042_wgs_gdc_realn.bam 94156997182 BAM harmonized CPTAC3 f39f31d3-1b6d-4f9f-b70a-2741cdd0af3c 15e31231f8876f5df25cc0801bbb75dc {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.WGS.N C3N-01998 PDA WGS blood_normal CPT0139020002 CPT0139020002.WholeGenome.RP-1303.bam 62766706166 BAM aligned CPTAC3 7147bc41-9394-472c-bac3-1c5591b1c78f 27793ca81adbfb7e68a87996054e1183 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01998.WGS.N.hg38 C3N-01998 PDA WGS blood_normal CPT0139020002 55b09b6d-156e-41c5-89a3-dcf2239933d7_wgs_gdc_realn.bam 90810803383 BAM harmonized CPTAC3 6a15a73f-627b-40ef-bf2e-86d9b7ee92c4 011b07a71e4927f0e746d5bb01694080 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01998.WGS.T C3N-01998 PDA WGS tumor CPT0139000010_1 CPT0139000010_1.WholeGenome.RP-1303.bam 127567042549 BAM aligned CPTAC3 ca045655-4a9d-4c00-952b-f7b0a7922a7f e08158ea4dec594feaa013ba51a8a129 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WGS.T C3N-01998 PDA WGS tumor CPT0139000010 CPT0139000010.WholeGenome.RP-1303.bam 72098098196 BAM aligned CPTAC3 fdec9c5e-3808-4e3b-91aa-fc42a80fc638 d03797465c3bb4881e892152f5705fb3 {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WGS.T.hg38 C3N-01998 PDA WGS tumor CPT0139000010_1 1a805149-0df5-4531-9563-71e4c703bcdc_wgs_gdc_realn.bam 184217658913 BAM harmonized CPTAC3 0d272186-8a99-438f-9e1e-debefc5479d5 d5e466280de160d7df130515fb0e5911 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WGS.T.hg38 C3N-01998 PDA WGS tumor CPT0139000010 9e8bf09d-6c3c-41f6-ada0-0255af5e514e_wgs_gdc_realn.bam 104942945419 BAM harmonized CPTAC3 caa67a4e-3de5-40ff-9f7a-b3148e24378e c5b0879e077aaf97ea6b93cc5e7c16ec {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WXS.A C3N-01998 PDA WXS tissue_normal CPT0138990006 CPT0138990006.WholeExome.RP-1303.bam 23974944373 BAM aligned CPTAC3 cb40ea76-8e56-4ccd-a6bd-7e2450e99141 10608b9983fc7c417d414d624761347c {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.WXS.A.hg38 C3N-01998 PDA WXS tissue_normal CPT0138990006 fd6d58be-dde5-48a6-bd15-4fd540911042_wxs_gdc_realn.bam 33715823903 BAM harmonized CPTAC3 c2646db1-eff9-4690-aaaa-76a6405cae58 b1315cd3f8e3d2901f6c01b64bf20e77 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal"} -C3N-01998.WXS.N C3N-01998 PDA WXS blood_normal CPT0139020002 CPT0139020002.WholeExome.RP-1303.bam 53783321069 BAM aligned CPTAC3 102d24a0-43ae-4162-92e6-01ebf16c9809 1537e678304a9e4ef87f08559ccea640 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01998.WXS.N.hg38 C3N-01998 PDA WXS blood_normal CPT0139020002 55b09b6d-156e-41c5-89a3-dcf2239933d7_wxs_gdc_realn.bam 72454088432 BAM harmonized CPTAC3 b1d90016-cc6d-439e-be14-55f718270eab 597abfa2179c079f0663b5055db2ec78 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal"} -C3N-01998.WXS.T C3N-01998 PDA WXS tumor CPT0139000010_1 CPT0139000010_1.WholeExome.RP-1303.bam 58563426311 BAM aligned CPTAC3 0c4e0dc2-b35e-4088-af32-4e807b79985a 4bbcae47f084260200f7cfec796e0763 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WXS.T C3N-01998 PDA WXS tumor CPT0139000010 CPT0139000010.WholeExome.RP-1303.bam 31307570392 BAM aligned CPTAC3 7eb5a91c-1dfe-446b-ac74-8e8abf68bb2f 33af94bec9330cc1f1455ffc5f5aa1ab {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WXS.T.hg38 C3N-01998 PDA WXS tumor CPT0139000010_1 1a805149-0df5-4531-9563-71e4c703bcdc_wxs_gdc_realn.bam 79902175680 BAM harmonized CPTAC3 60513f97-926b-4963-bae7-8c80e46a2a8c 122215b30d30ff34ee4ea4c485bedfc6 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor"} -C3N-01998.WXS.T.hg38 C3N-01998 PDA WXS tumor CPT0139000010 9e8bf09d-6c3c-41f6-ada0-0255af5e514e_wxs_gdc_realn.bam 41895236041 BAM harmonized CPTAC3 f8867dab-b5a9-40a9-a118-7e22576f1833 216535481874426d0c22020c70a48e99 {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor"} -C3N-02000.MethArray.Green.A C3N-02000 LUAD Methylation_Array tissue_normal CPT0109700009 203027390105_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e4def344-0cf4-4b3d-856f-b64420c68737 2f92c222fe2973a19affa9e750ca9ba0 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.MethArray.Green.T C3N-02000 LUAD Methylation_Array tumor CPT0109680010 203028200093_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ea7c884e-09ef-474f-adac-efa23116965a a8be3b96d2da7552a3a0b87016ca9915 {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor"} -C3N-02000.MethArray.Red.A C3N-02000 LUAD Methylation_Array tissue_normal CPT0109700009 203027390105_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 c2c76996-26d0-4bf2-9a51-8e40e070fa14 d1d0ee4a2254ae9bb90e2d36b6bfd0d7 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.MethArray.Red.T C3N-02000 LUAD Methylation_Array tumor CPT0109680010 203028200093_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 b86fb18e-921f-47df-a815-17a482821d0e 4216b328ffc45ddf044a6ca2e1039536 {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor"} -C3N-02000.miRNA-Seq.A.hg38 C3N-02000 LUAD miRNA-Seq tissue_normal CPT0109700006 1fc26065-2a63-478c-9fbb-9e608be23b90_mirnaseq_gdc_realn.bam 223362644 BAM harmonized CPTAC3 8af9f274-343c-457b-bce8-7647deb889f7 70b4c97b94f5ffb3faf6c21623d9dfd2 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.miRNA-Seq.S27_L004_R1.T C3N-02000 LUAD miRNA-Seq tumor CPT0109680007 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L004_R1_001.unaln.bam 245348159 BAM S27_L004_R1 unaligned CPTAC3 f5327c79-13f0-4fa1-86f8-9c1f22e33340 526db497dc1d6b886be2b759d554de1d {"aliquot_tag": "ALQ_e2693322", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02000.miRNA-Seq.S46_L004_R1.A C3N-02000 LUAD miRNA-Seq tissue_normal CPT0109700006 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L004_R1_001.unaln.bam 195250696 BAM S46_L004_R1 unaligned CPTAC3 4ff9a4b3-7a46-4527-87c0-93f88f4dadcd 6d2a7152a85c401407558b4d7d64cc34 {"aliquot_tag": "ALQ_6e429bd0", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.miRNA-Seq.T.hg38 C3N-02000 LUAD miRNA-Seq tumor CPT0109680007 9ca4f23f-8523-42d9-b93a-1e0c091796d1_mirnaseq_gdc_realn.bam 269593261 BAM harmonized CPTAC3 3f574fda-4e4a-47c9-931b-3112252cb6f5 0d2b8437e5cb0e08fc69d52ca372e142 {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor"} -C3N-02000.RNA-Seq.chimeric.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.chimeric.gdc_realn.bam 89346826 BAM chimeric harmonized CPTAC3 88752550-43aa-4b12-8a01-00afd6632bd1 771f2ae4d6a3fcd74aebf5e431d68c95 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.RNA-Seq.chimeric.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.chimeric.gdc_realn.bam 114988995 BAM chimeric harmonized CPTAC3 d5f857bb-17c0-4609-8555-872340923125 a5f404cd2fed43500a5705889e4e254c {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor"} -C3N-02000.RNA-Seq.genomic.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.genomic.gdc_realn.bam 8529201356 BAM genomic harmonized CPTAC3 90201214-4975-4d28-9383-a8fe7d6b03d2 bcb3a7a8e6abbf29baa0e33136d03364 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.RNA-Seq.genomic.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.genomic.gdc_realn.bam 8039236624 BAM genomic harmonized CPTAC3 1c2e8c8f-f005-4b2b-be04-1593103cc521 1bcd8a58ce08069431ce1995845218c3 {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor"} -C3N-02000.RNA-Seq.S11_L003_R1.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3992029558 FASTQ S11_L003_R1 unaligned CPTAC3 c37e4ac2-6ec2-460f-b4da-7375234d3b7c 3be21ed43d687f56c4c585e39fc9fc81 {"aliquot_tag": "ALQ_6e429bd0", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.RNA-Seq.S11_L003_R2.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4357840440 FASTQ S11_L003_R2 unaligned CPTAC3 7ba754f5-d88a-4e31-9093-866c2de14259 28bb9d5f4d0461fad336f2681430d2b6 {"aliquot_tag": "ALQ_6e429bd0", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.RNA-Seq.S24_L008_R1.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R1_001.fastq.gz 3640296272 FASTQ S24_L008_R1 unaligned CPTAC3 e6350e07-5dfe-4e0a-bbe3-22d4d4beeec2 fb420b7574240cac064e0e91c7e41688 {"aliquot_tag": "ALQ_e2693322", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02000.RNA-Seq.S24_L008_R2.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R2_001.fastq.gz 4074763701 FASTQ S24_L008_R2 unaligned CPTAC3 580c4dd0-4763-4cbf-9905-fcf1ed0bcd5e f02d2c4cfc71b180e5252365044fe9f6 {"aliquot_tag": "ALQ_e2693322", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02000.RNA-Seq.transcriptome.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.transcriptome.gdc_realn.bam 10236227622 BAM transcriptome harmonized CPTAC3 91b785b9-4222-4391-978c-5a15445b1fdb f6285b331c714d23c57d98b8c7fb3477 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.RNA-Seq.transcriptome.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.transcriptome.gdc_realn.bam 9403704891 BAM transcriptome harmonized CPTAC3 ad2b6083-5162-4b0d-8d08-058fcff35707 d533a5e962310e22946c725648fb3032 {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor"} -C3N-02000.WGS.A C3N-02000 LUAD WGS tissue_normal CPT0109700009 CPT0109700009.WholeGenome.RP-1303.bam 59122561060 BAM aligned CPTAC3 689d3c58-1f3a-4831-9314-7b4c1bb3ea2b 3d5d9ab75a83ea6d09753a7a88bf2409 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.WGS.A.hg38 C3N-02000 LUAD WGS tissue_normal CPT0109700009 e51fcd20-6fde-467e-8a41-07aefd567779_wgs_gdc_realn.bam 88026359100 BAM harmonized CPTAC3 e03c81fb-52e0-4116-ad29-62d77e52ac88 e9c312939caec04e45f6dbc567facdd6 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.WGS.N C3N-02000 LUAD WGS blood_normal CPT0139090002 CPT0139090002.WholeGenome.RP-1303.bam 59713363020 BAM aligned CPTAC3 9f9c8eef-1418-4340-aba0-3962203d7407 6f594b38c844ada2e4265d395d591305 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02000.WGS.N.hg38 C3N-02000 LUAD WGS blood_normal CPT0139090002 2e314885-1454-4783-a831-75870cf75983_wgs_gdc_realn.bam 86461784632 BAM harmonized CPTAC3 bf014c48-3581-4a84-8722-b035e7a9d738 31b6024d602a5c81000b59b4d1eabb29 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02000.WGS.T C3N-02000 LUAD WGS tumor CPT0109680010 CPT0109680010.WholeGenome.RP-1303.bam 69712117908 BAM aligned CPTAC3 8fa8d835-3da1-49c0-afb7-a8e63f3a9d39 356748827315745c334deb9103312204 {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor"} -C3N-02000.WGS.T.hg38 C3N-02000 LUAD WGS tumor CPT0109680010 1343972c-60e6-47e7-b70e-d19bd6d3f653_wgs_gdc_realn.bam 103977182366 BAM harmonized CPTAC3 b3175349-2e99-492c-80a8-8db100ea1653 569f2b34b26521be732c485cdcad961c {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor"} -C3N-02000.WXS.A C3N-02000 LUAD WXS tissue_normal CPT0109700009 CPT0109700009.WholeExome.RP-1303.bam 33287086358 BAM aligned CPTAC3 00cebc80-2109-451c-9a6f-2b1caef90ce5 bd73eecbd3641b62f8d69f466eb75be7 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.WXS.A.hg38 C3N-02000 LUAD WXS tissue_normal CPT0109700009 e51fcd20-6fde-467e-8a41-07aefd567779_wxs_gdc_realn.bam 44937991320 BAM harmonized CPTAC3 802eca50-b209-47f1-a139-d0dd7abb3720 f13c5ffc83402791931e7a9f1867001b {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02000.WXS.N C3N-02000 LUAD WXS blood_normal CPT0139090002 CPT0139090002.WholeExome.RP-1303.bam 24521308132 BAM aligned CPTAC3 42971285-f3ae-4a3c-9e98-1432c1f2ba99 dec2958f557c74817c03252a5260ed69 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02000.WXS.N.hg38 C3N-02000 LUAD WXS blood_normal CPT0139090002 2e314885-1454-4783-a831-75870cf75983_wxs_gdc_realn.bam 34112917365 BAM harmonized CPTAC3 295550ef-b363-468c-9df0-91c6b8cb9fdd 35adf590fa97ca11b44cc7f9c5f083d5 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02000.WXS.T C3N-02000 LUAD WXS tumor CPT0109680010 CPT0109680010.WholeExome.RP-1303.bam 21814589957 BAM aligned CPTAC3 b4a890f4-f116-4026-b70e-730bd90308a3 acb3075a49d36d8c0041ee0da3901e1d {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor"} -C3N-02000.WXS.T.hg38 C3N-02000 LUAD WXS tumor CPT0109680010 1343972c-60e6-47e7-b70e-d19bd6d3f653_wxs_gdc_realn.bam 29360561709 BAM harmonized CPTAC3 30fa5120-cf28-4153-8d7c-e57b00adcb9f e02d41d71a2cc313ec4d91d9a502b70d {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor"} -C3N-02002.MethArray.Green.A C3N-02002 LUAD Methylation_Array tissue_normal CPT0109710009 203219670217_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 eb5f8e38-38a1-4f1b-904f-52f5fbb82c38 c6c1cc6e04bba665592a8aebfe153ac4 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.MethArray.Green.T C3N-02002 LUAD Methylation_Array tumor CPT0109720010 203028200034_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2a03120a-2f54-4622-bb3a-6e281a903751 8cd80a5c841fae088d72824bed490aa7 {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor"} -C3N-02002.MethArray.Red.A C3N-02002 LUAD Methylation_Array tissue_normal CPT0109710009 203219670217_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 e32d6724-d61b-45a6-9500-432143c99810 9378bd14784e9c7fb9d76761882badc4 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.MethArray.Red.T C3N-02002 LUAD Methylation_Array tumor CPT0109720010 203028200034_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 9eb9086e-da0b-4ab8-819f-9fbb3a24f5ae 184b6cb6f411b1ee56298adf2785d354 {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor"} -C3N-02002.miRNA-Seq.A.hg38 C3N-02002 LUAD miRNA-Seq tissue_normal CPT0109710006 8ec91631-801d-489f-9644-2de493735af3_mirnaseq_gdc_realn.bam 273801604 BAM harmonized CPTAC3 1eeb758e-910e-4ad1-96a3-19b49a2a7df0 ccd7c63d0374fe19ef6a01744c1348ce {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.miRNA-Seq.S28_L004_R1.T C3N-02002 LUAD miRNA-Seq tumor CPT0109720007 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L004_R1_001.unaln.bam 244138607 BAM S28_L004_R1 unaligned CPTAC3 4a8f85ad-f889-431c-9567-1d3b8584daa1 8dce02e0e26bcafe1767e186d9472670 {"aliquot_tag": "ALQ_6385f826", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02002.miRNA-Seq.S47_L004_R1.A C3N-02002 LUAD miRNA-Seq tissue_normal CPT0109710006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L004_R1_001.unaln.bam 243097231 BAM S47_L004_R1 unaligned CPTAC3 cd04ce2f-4eb8-4554-9a33-eb464a8d2f50 6ffacde34d5dd590eeab6fb3ea32b5db {"aliquot_tag": "ALQ_5322b260", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.miRNA-Seq.T.hg38 C3N-02002 LUAD miRNA-Seq tumor CPT0109720007 2c782365-b190-44b9-ba05-8ee554837849_mirnaseq_gdc_realn.bam 265867571 BAM harmonized CPTAC3 c2bd3557-e1d9-443e-894c-0e640ab5cd95 6ff0f3fbec24ebf1ae3daab30b338eac {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor"} -C3N-02002.RNA-Seq.chimeric.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.chimeric.gdc_realn.bam 91023579 BAM chimeric harmonized CPTAC3 e8b04cf0-42e0-4cc5-b609-1f3344814491 25e6a8cb284d95aca6c0cd3f3127df2a {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.RNA-Seq.chimeric.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.chimeric.gdc_realn.bam 82932535 BAM chimeric harmonized CPTAC3 b30e112d-2e24-4955-b4cb-d2aae1aecdcf 6a5554f71efbb8881c8a5942df944e55 {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor"} -C3N-02002.RNA-Seq.genomic.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.genomic.gdc_realn.bam 9285899422 BAM genomic harmonized CPTAC3 67bc95a4-02e8-4d2d-bb4e-d9bc52a83a1f 6937c5feeb3f06bf2fd13f10f85505bd {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.RNA-Seq.genomic.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.genomic.gdc_realn.bam 8686356779 BAM genomic harmonized CPTAC3 5e831623-21a1-4c46-9930-05ebe168799b 6b6c125e27939783c1f72907528a5b29 {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor"} -C3N-02002.RNA-Seq.S10_L003_R1.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4370224894 FASTQ S10_L003_R1 unaligned CPTAC3 5be0e581-3faf-40f7-a539-5c6aca6d2953 35ab9d90ed1c5bf37e81d97cb247280b {"aliquot_tag": "ALQ_5322b260", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.RNA-Seq.S10_L003_R2.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4726117269 FASTQ S10_L003_R2 unaligned CPTAC3 d94126c2-139a-4f55-8d9f-4a906574c49a 86c9f52d3bd8a36511ee9f47ef4946e0 {"aliquot_tag": "ALQ_5322b260", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.RNA-Seq.S8_L008_R1.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4141056282 FASTQ S8_L008_R1 unaligned CPTAC3 a49f1bb4-2dd1-4b43-ae04-dadfb5ba75bd 413047aded036e15ef4094e49f6f1cd3 {"aliquot_tag": "ALQ_6385f826", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02002.RNA-Seq.S8_L008_R2.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4509133766 FASTQ S8_L008_R2 unaligned CPTAC3 7cf1758c-8452-4301-b81b-e42e6fbaa68f 42529f895aaa99892e07a5f46b88ff0b {"aliquot_tag": "ALQ_6385f826", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02002.RNA-Seq.transcriptome.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.transcriptome.gdc_realn.bam 11278340213 BAM transcriptome harmonized CPTAC3 aa752f05-6d97-4399-b366-b48fb9029c73 0b475b3c9529c369f4a51edb285e9e18 {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.RNA-Seq.transcriptome.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.transcriptome.gdc_realn.bam 10727001137 BAM transcriptome harmonized CPTAC3 c3ac46d6-f81e-4b2f-a8bd-d37717ca008c c7a01641cb74420cfb6de0d8e17c18c4 {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor"} -C3N-02002.WGS.A C3N-02002 LUAD WGS tissue_normal CPT0109710009 CPT0109710009.WholeGenome.RP-1303.bam 58334265541 BAM aligned CPTAC3 63b06dc1-b736-4a76-981c-4affb7915d9d b308e0cce5d0807c40eaf4ad094495e7 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.WGS.A.hg38 C3N-02002 LUAD WGS tissue_normal CPT0109710009 ee0f0256-ed6f-447e-9ad8-1060fb36e161_wgs_gdc_realn.bam 85432613028 BAM harmonized CPTAC3 072f98ce-93e7-449a-ba6c-625e57283f4b ad0ec4ee26826fcdfd267a3e6535cea4 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.WGS.N C3N-02002 LUAD WGS blood_normal CPT0139130002 CPT0139130002.WholeGenome.RP-1303.bam 58900139209 BAM aligned CPTAC3 a39f3064-d524-4a5f-a68d-f2d451194f91 b407089b76da8055cbddbf14ae1a22a5 {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02002.WGS.N.hg38 C3N-02002 LUAD WGS blood_normal CPT0139130002 202db50a-4134-448c-9481-ced3fd4d4dc2_wgs_gdc_realn.bam 85547622583 BAM harmonized CPTAC3 471e70c6-51e8-4100-a63b-63a3f6a5a678 6ceadc4236987e52617d57ede9283975 {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02002.WGS.T C3N-02002 LUAD WGS tumor CPT0109720010 CPT0109720010.WholeGenome.RP-1303.bam 63042057812 BAM aligned CPTAC3 d802fffd-7af0-4431-83cd-0bb162dca3fb 8488a9f40344d72889624fa41c7a5ade {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor"} -C3N-02002.WGS.T.hg38 C3N-02002 LUAD WGS tumor CPT0109720010 1abf55ca-df9a-4ac4-8c33-510b39936273_wgs_gdc_realn.bam 91748325617 BAM harmonized CPTAC3 f55aa86a-653a-4e17-a43e-6120f929023c 870f9cf758fcf514b1a95ad4fb697a7a {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor"} -C3N-02002.WXS.A C3N-02002 LUAD WXS tissue_normal CPT0109710009 CPT0109710009.WholeExome.RP-1303.bam 25498345186 BAM aligned CPTAC3 546bd714-d5a7-4987-8dbf-10ecdfabde7b 78eeaed1fd9ea7638066296b174bbe61 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.WXS.A.hg38 C3N-02002 LUAD WXS tissue_normal CPT0109710009 ee0f0256-ed6f-447e-9ad8-1060fb36e161_wxs_gdc_realn.bam 35117796713 BAM harmonized CPTAC3 437e9d6f-dc7d-4bcf-98fa-3419777978ce d48ea3b13ef09b49ee20869a308ec006 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02002.WXS.N C3N-02002 LUAD WXS blood_normal CPT0139130002 CPT0139130002.WholeExome.RP-1303.bam 33059402495 BAM aligned CPTAC3 bd7b742f-a924-49cd-8e26-ec3a0bb27e8e 701d6c172ab190f155d9edb30a0777f5 {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02002.WXS.N.hg38 C3N-02002 LUAD WXS blood_normal CPT0139130002 202db50a-4134-448c-9481-ced3fd4d4dc2_wxs_gdc_realn.bam 43971341873 BAM harmonized CPTAC3 006e39b0-96ca-4339-a510-96b6005eeae8 0263465913603b7c61f2518cd29e12ad {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02002.WXS.T C3N-02002 LUAD WXS tumor CPT0109720010 CPT0109720010.WholeExome.RP-1303.bam 22740755323 BAM aligned CPTAC3 fb134f39-c84a-40f0-809b-a0f9524d8da9 c446602c68cddabc34f8cf54a85d128c {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor"} -C3N-02002.WXS.T.hg38 C3N-02002 LUAD WXS tumor CPT0109720010 1abf55ca-df9a-4ac4-8c33-510b39936273_wxs_gdc_realn.bam 30770328088 BAM harmonized CPTAC3 8c10fc2f-eeb0-44fb-b18f-e42c4f022697 5aeedf36072ac8bd0804102caa8067c9 {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor"} -C3N-02003.MethArray.Green.A C3N-02003 LUAD Methylation_Array tissue_normal CPT0109760009 203219650165_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 784adb6d-d9c9-4c15-ab13-570a022f98cb ec13980cbc11746d080fc1cc57a4b2c3 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.MethArray.Green.T C3N-02003 LUAD Methylation_Array tumor CPT0109740010 203028200023_R02C01_Grn.idat 13676232 IDAT Green NA CPTAC3 e2f86682-0a0d-4542-a688-592c308f4888 fe77a8527053541c2a74b56953cfb8c5 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor"} -C3N-02003.MethArray.Red.A C3N-02003 LUAD Methylation_Array tissue_normal CPT0109760009 203219650165_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 c081e003-887c-48c6-a3b6-9ea34addeefe 322939ead62a0fb3949f57fc35de5881 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.MethArray.Red.T C3N-02003 LUAD Methylation_Array tumor CPT0109740010 203028200023_R02C01_Red.idat 13676232 IDAT Red NA CPTAC3 1cb26207-401e-4e91-88e3-3e4745a9017b d5380602cc782b1f02e1c02d63214c1f {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor"} -C3N-02003.miRNA-Seq.A.hg38 C3N-02003 LUAD miRNA-Seq tissue_normal CPT0109760006 82a6fd72-de09-497f-a8aa-930c01838d2c_mirnaseq_gdc_realn.bam 233882523 BAM harmonized CPTAC3 6d730713-989a-4b88-811c-b633de485f3e 117007fa574e8409adec8982af30bb7b {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.miRNA-Seq.S29_L004_R1.T C3N-02003 LUAD miRNA-Seq tumor CPT0109740007 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L004_R1_001.unaln.bam 182925682 BAM S29_L004_R1 unaligned CPTAC3 47ed4daf-4042-49ee-a2c7-80a43f1bdcb0 57f0c3de39431bde02d9fed4d8b59ba1 {"aliquot_tag": "ALQ_ecc50d86", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02003.miRNA-Seq.S48_L004_R1.A C3N-02003 LUAD miRNA-Seq tissue_normal CPT0109760006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L004_R1_001.unaln.bam 207987594 BAM S48_L004_R1 unaligned CPTAC3 c28c49f9-fc78-405f-a37d-c1fdf5f91e42 66604c177c7e86d011a7afcf371140b8 {"aliquot_tag": "ALQ_e1026e70", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.miRNA-Seq.T.hg38 C3N-02003 LUAD miRNA-Seq tumor CPT0109740007 ef78f3d1-265d-4e1f-aca3-160f664f7d23_mirnaseq_gdc_realn.bam 209558794 BAM harmonized CPTAC3 98255690-02a8-4c2f-8ef2-70a90364e5c7 07817f05a0148e3776a7e42f8f0d3465 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor"} -C3N-02003.RNA-Seq.chimeric.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.chimeric.gdc_realn.bam 62028412 BAM chimeric harmonized CPTAC3 2f3cab0e-98d0-48e4-9ae4-e8245f200c0a eba6867c1084f0855ea9eca663af6ea7 {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.RNA-Seq.chimeric.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.chimeric.gdc_realn.bam 93180467 BAM chimeric harmonized CPTAC3 307c5935-6c13-4dc9-9ed7-ef87f9a5dc2c 964a4247752bcdb31e3d3f66fd6baf52 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor"} -C3N-02003.RNA-Seq.genomic.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.genomic.gdc_realn.bam 8297119392 BAM genomic harmonized CPTAC3 8e9fa53c-4a2d-4d98-9eee-c9787f3c0204 64c9ba77fc1de2290e63cd3c9d889eac {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.RNA-Seq.genomic.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.genomic.gdc_realn.bam 6876537011 BAM genomic harmonized CPTAC3 1ba44dd6-7052-4c99-a08a-1a33471f4e5c 4909aeb0e775e84bcbf0097295329c76 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor"} -C3N-02003.RNA-Seq.S12_L003_R1.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3882852681 FASTQ S12_L003_R1 unaligned CPTAC3 96a22aec-6a15-4edb-9bf7-027ac1e746e4 a4b114ee388f48ce375935e7c6acd57d {"aliquot_tag": "ALQ_e1026e70", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.RNA-Seq.S12_L003_R2.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4216757340 FASTQ S12_L003_R2 unaligned CPTAC3 c99083e8-6f5e-4516-999b-0236384c53e9 4024ab0d77240f0d8f8fe491dcbf5a03 {"aliquot_tag": "ALQ_e1026e70", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.RNA-Seq.S7_L007_R1.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3160557380 FASTQ S7_L007_R1 unaligned CPTAC3 ea62e60b-7213-4039-91e0-0e9c733117f2 4a54209ef1c8f72377582193d788af53 {"aliquot_tag": "ALQ_ecc50d86", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02003.RNA-Seq.S7_L007_R2.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3493250359 FASTQ S7_L007_R2 unaligned CPTAC3 9c13c469-3b06-4c2e-af20-2cbdcab055ed c2249ab3dff77fcc1019eb21f6b11b51 {"aliquot_tag": "ALQ_ecc50d86", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02003.RNA-Seq.transcriptome.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.transcriptome.gdc_realn.bam 9845994301 BAM transcriptome harmonized CPTAC3 21f168eb-8c41-430f-9e9f-64f9b10ef5db 5d72b483da9d05b0c89741f16e951af0 {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.RNA-Seq.transcriptome.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.transcriptome.gdc_realn.bam 10084602570 BAM transcriptome harmonized CPTAC3 7b575fac-5940-4c41-b259-8f99a05267ae 09db01c829cb812d92b37d2808102963 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor"} -C3N-02003.WGS.A C3N-02003 LUAD WGS tissue_normal CPT0109760009 CPT0109760009.WholeGenome.RP-1303.bam 61776001726 BAM aligned CPTAC3 92bbd25f-8487-4c91-8e7c-38d0614fbbcc 1cf99139a950e3233a7ba6c2884c0412 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.WGS.A.hg38 C3N-02003 LUAD WGS tissue_normal CPT0109760009 31e6ec45-f44d-4d31-9b84-4b06716a284c_wgs_gdc_realn.bam 90261056590 BAM harmonized CPTAC3 09bf63f6-1f78-4842-8ccc-621f71feca5b 907cd2ae1654f7be3fdadcabc6412b96 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.WGS.N C3N-02003 LUAD WGS blood_normal CPT0139170002 CPT0139170002.WholeGenome.RP-1303.bam 66574103107 BAM aligned CPTAC3 1e76d694-e8d0-4b2f-a99c-88b097072018 159c02207ecc08341c8d14a5e33bf99c {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal"} -C3N-02003.WGS.N.hg38 C3N-02003 LUAD WGS blood_normal CPT0139170002 7ca71ce5-b234-4709-8edc-669943e1e2dd_wgs_gdc_realn.bam 97397004399 BAM harmonized CPTAC3 6e5f732a-d376-4bb1-a4b1-6c958e6bcb1a 033d2a3358ed3dcd47e4542ba349cddb {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal"} -C3N-02003.WGS.T C3N-02003 LUAD WGS tumor CPT0109740010 CPT0109740010.WholeGenome.RP-1303.bam 58777404004 BAM aligned CPTAC3 ef43177b-3082-478d-b5de-8be5b03ee694 cc410a916c2bfbb2ce4e24a1206195df {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor"} -C3N-02003.WGS.T.hg38 C3N-02003 LUAD WGS tumor CPT0109740010 ef408498-3384-4707-9dc5-972baec87b00_wgs_gdc_realn.bam 86045310444 BAM harmonized CPTAC3 16fb6379-c03e-4861-a991-b6673e10d276 86e0181f03ded2ed6f6176b6bc626e19 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor"} -C3N-02003.WXS.A C3N-02003 LUAD WXS tissue_normal CPT0109760009 CPT0109760009.WholeExome.RP-1303.bam 23802560221 BAM aligned CPTAC3 a75c1c45-aca1-4d0b-a747-f811cfe4eaf2 45e4e9d97af0abf6bc090062608a8c8e {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.WXS.A.hg38 C3N-02003 LUAD WXS tissue_normal CPT0109760009 31e6ec45-f44d-4d31-9b84-4b06716a284c_wxs_gdc_realn.bam 32001263995 BAM harmonized CPTAC3 ab1ce893-3592-4958-b708-fabfa48af51c de0bca1a7db6c05be0b1b2d3c6598271 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02003.WXS.N C3N-02003 LUAD WXS blood_normal CPT0139170002 CPT0139170002.WholeExome.RP-1303.bam 26062153859 BAM aligned CPTAC3 5ed60034-444c-4143-9ad9-6e690ac605e1 b0c69f9ab663d10e2921bbef27405f24 {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal"} -C3N-02003.WXS.N.hg38 C3N-02003 LUAD WXS blood_normal CPT0139170002 7ca71ce5-b234-4709-8edc-669943e1e2dd_wxs_gdc_realn.bam 34843220411 BAM harmonized CPTAC3 6c5a9ab5-1366-4be1-8e99-25ff33186bc2 51d7d24ceededc61c4d641d959e38497 {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal"} -C3N-02003.WXS.T C3N-02003 LUAD WXS tumor CPT0109740010 CPT0109740010.WholeExome.RP-1303.bam 26745838159 BAM aligned CPTAC3 78b5ee99-a2fb-4b29-a717-543cd332f195 50238a790aae023b7f80e7a4d207ef09 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor"} -C3N-02003.WXS.T.hg38 C3N-02003 LUAD WXS tumor CPT0109740010 ef408498-3384-4707-9dc5-972baec87b00_wxs_gdc_realn.bam 36401003171 BAM harmonized CPTAC3 1fb9c68e-3526-421c-bbd8-5a86ec741f6b 34ea626f34d1d03f8805b3833bb1cd40 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor"} -C3N-02005.MethArray.Green.T C3N-02005 CCRCC Methylation_Array tumor CPT0109770007 203219720176_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 74114460-7842-4c60-b58b-e635757da05e cfa49d1587ed126137278b3a0d757b97 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor"} -C3N-02005.MethArray.Red.T C3N-02005 CCRCC Methylation_Array tumor CPT0109770007 203219720176_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 2b31939a-afd6-49ad-a34a-5a79aafbd14f 0f04192addd8fbd0554fef0f81cb4eb0 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor"} -C3N-02005.miRNA-Seq.S6_L004_R1.T C3N-02005 CCRCC miRNA-Seq tumor CPT0109770010 190108_UNC31-K00269_0176_AHYGLVBBXX_GCCAAT_S6_L004_R1_001.unaln.bam 225738162 BAM S6_L004_R1 unaligned CPTAC3 c75bfd81-bcf7-40cb-9f1a-cbc38b9db2b0 7dccd6266ac20698df7df2bc68daa874 {"aliquot_tag": "ALQ_2c1ad3b4", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02005.miRNA-Seq.T.hg38 C3N-02005 CCRCC miRNA-Seq tumor CPT0109770010 858a87b4-ff68-449f-8096-608adf3643ce_mirnaseq_gdc_realn.bam 247935341 BAM harmonized CPTAC3 5b881acc-072a-49c6-8979-0cb30a818be1 f59e977903d18d50e4c1865f104dde22 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor"} -C3N-02005.RNA-Seq.chimeric.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.chimeric.gdc_realn.bam 59473518 BAM chimeric harmonized CPTAC3 d1061fd6-ad73-42c4-ace0-47ba4b79339c 2a4d4140c6ddd0b3a6da758e9f38bfc4 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor"} -C3N-02005.RNA-Seq.genomic.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.genomic.gdc_realn.bam 8986205506 BAM genomic harmonized CPTAC3 9a312a75-897b-4b35-88fb-1133d1e518b4 0d4b88855b008f59ed7ec5ccf78e1d49 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor"} -C3N-02005.RNA-Seq.S6_L002_R1.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4033270746 FASTQ S6_L002_R1 unaligned CPTAC3 afde1752-f476-45e9-bcac-c37bf88cc5b5 908a8cd88f321b816dfab5406dadee27 {"aliquot_tag": "ALQ_2c1ad3b4", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02005.RNA-Seq.S6_L002_R2.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4465342500 FASTQ S6_L002_R2 unaligned CPTAC3 eab3506f-acc0-4135-9683-7d8d8e9a3e14 71ae0683c286c3c7ad0f4a6fa6769ab2 {"aliquot_tag": "ALQ_2c1ad3b4", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02005.RNA-Seq.transcriptome.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.transcriptome.gdc_realn.bam 11478074710 BAM transcriptome harmonized CPTAC3 3084aa58-1891-483b-b0a9-395ad347e12b c125a7b83d8584190b3e961777f65063 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor"} -C3N-02005.WGS.N C3N-02005 CCRCC WGS blood_normal CPT0139310002 CPT0139310002.WholeGenome.RP-1303.bam 62515735075 BAM aligned CPTAC3 446e9795-a22a-45f6-acc8-21e79a2a534c 21bf8ce5ba38e313a8e4a179d0aaaae5 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02005.WGS.N.hg38 C3N-02005 CCRCC WGS blood_normal CPT0139310002 92eb0a8b-05b8-4e77-8c2f-3b3e09c26f8b_wgs_gdc_realn.bam 92542452110 BAM harmonized CPTAC3 9094a340-71d1-4c3d-b13f-ae706fa92ee9 ba9d8bfe12564402048b831f3ff51cf1 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02005.WGS.T C3N-02005 CCRCC WGS tumor CPT0109770007 CPT0109770007.WholeGenome.RP-1303.bam 64836795238 BAM aligned CPTAC3 83ec74e1-c75f-4f1f-b9fb-c871dc5eb269 b4eaa624d8248c5d60366fee8a94d541 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor"} -C3N-02005.WGS.T.hg38 C3N-02005 CCRCC WGS tumor CPT0109770007 c4222331-f983-46eb-af90-93cac70d9c6d_wgs_gdc_realn.bam 95463562995 BAM harmonized CPTAC3 de921a5d-c59c-4cd7-8467-45a0b616788a 96af7f7e54e8a8f9b25fd9a8afd08c29 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor"} -C3N-02005.WXS.N C3N-02005 CCRCC WXS blood_normal CPT0139310002 CPT0139310002.WholeExome.RP-1303.bam 31458264655 BAM aligned CPTAC3 8c55915d-a29a-4eb9-a78f-272bcfde444b 190b4759e176d496df8de59878e01640 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02005.WXS.N.hg38 C3N-02005 CCRCC WXS blood_normal CPT0139310002 92eb0a8b-05b8-4e77-8c2f-3b3e09c26f8b_wxs_gdc_realn.bam 43420619798 BAM harmonized CPTAC3 7564ae49-1759-443e-958d-c53de897a274 7c4d74d17c069c9981b293c55ed481d0 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02005.WXS.T C3N-02005 CCRCC WXS tumor CPT0109770007 CPT0109770007.WholeExome.RP-1303.bam 24497271441 BAM aligned CPTAC3 bbbd40f9-d5a2-4245-9410-7c53a0e5427b 5fdb1b878b23a296d56c87e0be1199ef {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor"} -C3N-02005.WXS.T.hg38 C3N-02005 CCRCC WXS tumor CPT0109770007 c4222331-f983-46eb-af90-93cac70d9c6d_wxs_gdc_realn.bam 33917101385 BAM harmonized CPTAC3 54485fd9-afbe-4f20-a76c-aefd965b0c5d 9d3f867450323ef330b743f399e81085 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor"} -C3N-02010.MethArray.Green.T C3N-02010 PDA Methylation_Array tumor CPT0241500007 203561620079_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 faddeb2b-9649-45bc-836b-6f9cc7097c68 210ea041d3142bdf1c3c02fd86bd05cf {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor"} -C3N-02010.MethArray.Red.T C3N-02010 PDA Methylation_Array tumor CPT0241500007 203561620079_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 4510dded-4a1c-4708-9e3c-e67e26ef86f5 08e87f0869464e9e7b09c34ebbea3cff {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor"} -C3N-02010.miRNA-Seq.A.hg38 C3N-02010 PDA miRNA-Seq tissue_normal CPT0241510007 06f55666-c6cf-425e-9c1d-0ed980316a31_mirnaseq_gdc_realn.bam 273768593 BAM harmonized CPTAC3 1fc6f794-4faf-4d34-9747-8ae21cf3b2a6 1f1e284d75e351dffcb8a522158107f1 {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02010.miRNA-Seq.S30_L002_R1.A C3N-02010 PDA miRNA-Seq tissue_normal CPT0241510007 190813_UNC32-K00270_0196_AH5MCWBBXY_ATCACG_S30_L002_R1_001.unaln.bam 240304441 BAM S30_L002_R1 unaligned CPTAC3 d65705fb-c7a8-4735-b275-02a097dfd5a8 27d2ebcb3fa99b94b0fbfca4c0712d4b {"aliquot_tag": "ALQ_e7c55fa5", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02010.miRNA-Seq.S32_L005_R1.T C3N-02010 PDA miRNA-Seq tumor CPT0241500010 190712_UNC32-K00270_0192_BH7HL3BBXY_GATCAG_S32_L005_R1_001.unaln.bam 205258059 BAM S32_L005_R1 unaligned CPTAC3 c542f01c-2759-4665-9940-98e691098f42 02e688b56d0fc6b23a7101cb4d534411 {"aliquot_tag": "ALQ_5ddad2f7", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02010.miRNA-Seq.T.hg38 C3N-02010 PDA miRNA-Seq tumor CPT0241500010 08b29754-5e87-4a1d-845c-cb3c0d823cea_mirnaseq_gdc_realn.bam 229188098 BAM harmonized CPTAC3 b0905aa8-e3b2-4b26-be4a-b79cc66c7143 ea123fa6dc89c3491f655ed43c876d2a {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor"} -C3N-02010.RNA-Seq.chimeric.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.chimeric.gdc_realn.bam 33483472 BAM chimeric harmonized CPTAC3 54031f54-53a8-400e-8ba4-ac593ea4195d d60c139b9f7da1495535abda2bab72da {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02010.RNA-Seq.chimeric.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.chimeric.gdc_realn.bam 39480639 BAM chimeric harmonized CPTAC3 2b7c2d09-4215-4f89-a639-806e21898037 89416f33d300e6a4429a722a51e35d4c {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor"} -C3N-02010.RNA-Seq.genomic.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.genomic.gdc_realn.bam 7410446604 BAM genomic harmonized CPTAC3 a2c17e0a-a517-47e3-980a-d0775aca0217 d6254c766440516459948c0a48cf199f {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02010.RNA-Seq.genomic.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.genomic.gdc_realn.bam 8946340637 BAM genomic harmonized CPTAC3 74e09891-1587-4641-8d5d-6f465d88ed6d ebd28451da9667578b68f2f2db68add5 {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor"} -C3N-02010.RNA-Seq.S12_L003_R1.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R1_001.fastq.gz 3427102841 FASTQ S12_L003_R1 unaligned CPTAC3 eeff2902-60e5-404d-9ea1-9d0d23ba346d 72a800ac3ea1efe38c778f1bc65102f7 {"aliquot_tag": "ALQ_e7c55fa5", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02010.RNA-Seq.S12_L003_R2.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R2_001.fastq.gz 3732783418 FASTQ S12_L003_R2 unaligned CPTAC3 f6b5287d-66f9-4a72-a5d0-130ade6a0a0a 2ffdcf56badc8d39008d437227541317 {"aliquot_tag": "ALQ_e7c55fa5", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02010.RNA-Seq.S30_L008_R1.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R1_001.fastq.gz 4103338946 FASTQ S30_L008_R1 unaligned CPTAC3 23ac9bde-8bfe-45e1-998f-eb3aa64bf690 fbd62b600eb3a04c89ad42342d7b92b7 {"aliquot_tag": "ALQ_5ddad2f7", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02010.RNA-Seq.S30_L008_R2.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R2_001.fastq.gz 4891018155 FASTQ S30_L008_R2 unaligned CPTAC3 1de6db7e-1fa5-4209-bdf7-3579657ad57f cbca8eb1985217a49e89ca587e14780a {"aliquot_tag": "ALQ_5ddad2f7", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02010.RNA-Seq.transcriptome.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.transcriptome.gdc_realn.bam 8979305967 BAM transcriptome harmonized CPTAC3 0108b760-962f-4c8e-b09b-993fbfd21389 22b336a3bfe4008486c988a640eaae0d {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02010.RNA-Seq.transcriptome.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.transcriptome.gdc_realn.bam 11967319195 BAM transcriptome harmonized CPTAC3 afac27e7-7f52-4a1e-9f35-7cc4acceb554 a2e014d58376c07407b78bf44d0e7ed4 {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor"} -C3N-02010.WGS.N C3N-02010 PDA WGS blood_normal CPT0241760002 CPT0241760002.WholeGenome.RP-1303.bam 91505987615 BAM aligned CPTAC3 27fd40ab-e229-42df-8562-4274b676cda5 d283cef550e3f38326453079f8a1d950 {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal"} -C3N-02010.WGS.N.hg38 C3N-02010 PDA WGS blood_normal CPT0241760002 b5d2a8d2-6e19-47d0-a91e-3758551f94ea_wgs_gdc_realn.bam 132268099792 BAM harmonized CPTAC3 c20649ed-3890-46a2-98e4-98effe85249c 05bde3acce4d1fd44ecf9b570f2ad84b {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal"} -C3N-02010.WGS.T C3N-02010 PDA WGS tumor CPT0241500007 CPT0241500007.WholeGenome.RP-1303.bam 147134553298 BAM aligned CPTAC3 29d76f7b-3c7c-45bf-808c-030dd5aa818c 25113a392766b53efefc770a9b439a2b {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor"} -C3N-02010.WGS.T.hg38 C3N-02010 PDA WGS tumor CPT0241500007 d5c73e9d-e1db-4dd1-aa12-4a3c0b2fd33e_wgs_gdc_realn.bam 215825848801 BAM harmonized CPTAC3 167266e8-56ad-4c3b-8b74-8b28bc95da77 c776f9fafe45419e2a87cb9c7b024324 {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor"} -C3N-02010.WXS.N C3N-02010 PDA WXS blood_normal CPT0241760002 CPT0241760002.WholeExome.RP-1303.bam 25825206460 BAM aligned CPTAC3 1806b28b-5cb5-4599-9732-c42b8487dd5c 33a621716983b1dcd2b53bfa240f75c3 {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal"} -C3N-02010.WXS.N.hg38 C3N-02010 PDA WXS blood_normal CPT0241760002 b5d2a8d2-6e19-47d0-a91e-3758551f94ea_wxs_gdc_realn.bam 35425875415 BAM harmonized CPTAC3 39b94848-eef9-4aa0-b614-6703fd6edb1e f88aafb7f538d13bfdcb685d6bafb2b0 {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal"} -C3N-02010.WXS.T C3N-02010 PDA WXS tumor CPT0241500007 CPT0241500007.WholeExome.RP-1303.bam 24798902892 BAM aligned CPTAC3 0b301491-679c-43dd-bf14-8ac0d24fc9e4 5e7fdf99b62ce0f5190bd664ddf801c7 {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor"} -C3N-02010.WXS.T.hg38 C3N-02010 PDA WXS tumor CPT0241500007 d5c73e9d-e1db-4dd1-aa12-4a3c0b2fd33e_wxs_gdc_realn.bam 34429079937 BAM harmonized CPTAC3 557dc8dc-2cdf-44e6-94a1-9d320217236e f085f8924831e2ebdec03ececf2f995b {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor"} -C3N-02012.MethArray.Green.T C3N-02012 UCEC Methylation_Array tumor CPT0115470009 203219650042_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f3094330-0878-4f1a-ac58-04dcab9220e8 ceefe1cedddb1726e2a68ef596a17bea {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor"} -C3N-02012.MethArray.Red.T C3N-02012 UCEC Methylation_Array tumor CPT0115470009 203219650042_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 53e3174b-3223-4c54-a602-69e393b80e3f 249a821053c01d4a42ee6f58fbdffba9 {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor"} -C3N-02012.miRNA-Seq.S18_L002_R1.T C3N-02012 UCEC miRNA-Seq tumor CPT0115470006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTCCGC_S18_L002_R1_001.unaln.bam 280980785 BAM S18_L002_R1 unaligned CPTAC3 f5dc29dc-7ef5-424b-873c-79488c443f3f b787d70c7cad8dd0b48e5ae30c9e5bd5 {"aliquot_tag": "ALQ_51fc5f84", "sample": "S18", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02012.miRNA-Seq.T.hg38 C3N-02012 UCEC miRNA-Seq tumor CPT0115470006 e5da0962-5a06-4e41-b177-8b5a431ce494_mirnaseq_gdc_realn.bam 329544177 BAM harmonized CPTAC3 8a11e0a6-c508-40b7-b59a-ddb85021083a 96fc7d3eadf7025a40bbae069d67e967 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.chimeric.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.chimeric.gdc_realn.bam 32006029 BAM chimeric harmonized CPTAC3 93df1f7a-5622-483f-8f1c-8adf95960b85 2342ae1a07c77acc3a4d23d719d8b213 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.chimeric.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.chimeric.gdc_realn.bam 50539801 BAM chimeric harmonized CPTAC3 20eb08b7-bc6c-49d0-ad26-de66f3467c90 a7104f698181a3e37bd93cc2d8a2e964 {"aliquot_tag": "ALQ_70a87446", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.genomic.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.genomic.gdc_realn.bam 10045757270 BAM genomic harmonized CPTAC3 795c12ec-2e76-47dd-a0f5-561b844ef6fb e0bd808e16a5bea4ebf707c1d009cc89 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.genomic.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.genomic.gdc_realn.bam 4904050631 BAM genomic harmonized CPTAC3 93119456-c31b-4bd3-8220-9c7ae4e5ea72 51af8b575cdd9c1c7376c3b714a1cd2a {"aliquot_tag": "ALQ_70a87446", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.S22_L006_R1.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4383429182 FASTQ S22_L006_R1 unaligned CPTAC3 bdb5f05c-3ae8-4f7c-a9aa-47a0e9778ff8 52ebbde5ab88fc2f511dd75ddd7febad {"aliquot_tag": "ALQ_51fc5f84", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.S22_L006_R2.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4413847269 FASTQ S22_L006_R2 unaligned CPTAC3 dfc66d0d-d425-4524-9a3a-4a3c55fd76d4 c86a7b9aad9bbcf15d3529566fce5cb8 {"aliquot_tag": "ALQ_51fc5f84", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.S61_R1.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R1_001.fastq.gz 2747299807 FASTQ S61_R1 unaligned CPTAC3 4362daff-a91a-4d2e-8bf7-ab8018d604e7 eb43bc5e1664d1da05092d0c73d71644 {"aliquot_tag": "ALQ_70a87446", "sample": "S61", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.S61_R2.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R2_001.fastq.gz 2868381966 FASTQ S61_R2 unaligned CPTAC3 2c6f575e-9e22-4359-81e6-7cb669a4a4ce 2492454093708fa77ceb252d2344f946 {"aliquot_tag": "ALQ_70a87446", "sample": "S61", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.transcriptome.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.transcriptome.gdc_realn.bam 11199069793 BAM transcriptome harmonized CPTAC3 bf347293-d55b-4d13-bdfb-2d1d6a50ab27 31a55f102b6ea55f0abbbc8643fda973 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor"} -C3N-02012.RNA-Seq.transcriptome.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.transcriptome.gdc_realn.bam 2692361570 BAM transcriptome harmonized CPTAC3 267aa85b-6f83-44ac-9d5d-779cbfa01607 3855bcbeeb2e45f7f4609eea73f3aec4 {"aliquot_tag": "ALQ_70a87446", "gdc_sample_type": "Primary Tumor"} -C3N-02012.WGS.N C3N-02012 UCEC WGS blood_normal CPT0116390002 CPT0116390002.WholeGenome.RP-1303.bam 62607107661 BAM aligned CPTAC3 b8b93532-1066-4785-bd91-560355666abd 3561fc00f96ed8c9c78070f8cdeae58d {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02012.WGS.N.hg38 C3N-02012 UCEC WGS blood_normal CPT0116390002 a87b0618-96ab-4bff-a90e-bed94464d309_wgs_gdc_realn.bam 91406397337 BAM harmonized CPTAC3 6d80ef08-c423-4405-8d7f-342c0f77b1d2 dc9dc52630f92b6f17409e28c0af2f72 {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02012.WGS.T C3N-02012 UCEC WGS tumor CPT0115470009 CPT0115470009.WholeGenome.RP-1303.bam 55042758115 BAM aligned CPTAC3 2857d8ec-ec5b-42de-8138-3a041ee745d3 14d898fb53b32c3af0d986021e65ef0d {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor"} -C3N-02012.WGS.T.hg38 C3N-02012 UCEC WGS tumor CPT0115470009 549a8eef-57f5-44e5-b0bb-8620f57cf844_wgs_gdc_realn.bam 81778399698 BAM harmonized CPTAC3 f8dafe31-2f34-466f-a11e-2c8ab38fd6f6 3fbc81482f1d3a30cba2bb96eeeae0b9 {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor"} -C3N-02012.WXS.N C3N-02012 UCEC WXS blood_normal CPT0116390002 CPT0116390002.WholeExome.RP-1303.bam 31306238839 BAM aligned CPTAC3 04a86542-3719-44a7-a58a-d23a35a8fc13 82b19ee0d7b85a6fc4a0c28810310912 {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02012.WXS.N.hg38 C3N-02012 UCEC WXS blood_normal CPT0116390002 a87b0618-96ab-4bff-a90e-bed94464d309_wxs_gdc_realn.bam 42890918867 BAM harmonized CPTAC3 c18f0bbb-14e0-45f6-9244-cffd3bd61c54 d718310bfb9950bbb6659b44c7e18ca0 {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02012.WXS.T C3N-02012 UCEC WXS tumor CPT0115470009 CPT0115470009.WholeExome.RP-1303.bam 27885976142 BAM aligned CPTAC3 75341caa-7b4c-47ca-bc1f-9e3da6c7d5df 5b42c9663b87be853dabe028a0d403af {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor"} -C3N-02012.WXS.T.hg38 C3N-02012 UCEC WXS tumor CPT0115470009 549a8eef-57f5-44e5-b0bb-8620f57cf844_wxs_gdc_realn.bam 38318056369 BAM harmonized CPTAC3 62dc2949-ce15-4bfc-9957-b801add8d650 ec5ce4ee5e1e9a17e7e3001ec4d716b2 {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor"} -C3N-02015.MethArray.Green.T C3N-02015 CCRCC Methylation_Array tumor CPT0115350009 203219670147_R02C01_Grn.idat 13676235 IDAT Green NA CPTAC3 5834a76b-5fd6-491e-905b-3caee72f02a8 d08807add8b5b466e180ea6ec47eef75 {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor"} -C3N-02015.MethArray.Red.T C3N-02015 CCRCC Methylation_Array tumor CPT0115350009 203219670147_R02C01_Red.idat 13676235 IDAT Red NA CPTAC3 4ee446fc-15f5-4db6-8ed0-f1cdd78d3cbe 5535851f5a3a9294440db91ef568010a {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor"} -C3N-02015.miRNA-Seq.S17_L002_R1.T C3N-02015 CCRCC miRNA-Seq tumor CPT0115350006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTAGAG_S17_L002_R1_001.unaln.bam 229028120 BAM S17_L002_R1 unaligned CPTAC3 e66145cb-0b23-4dba-97a2-b3c57d8cdbdd 778821a739722935d61c26e0a97b9310 {"aliquot_tag": "ALQ_36393c5c", "sample": "S17", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02015.miRNA-Seq.T.hg38 C3N-02015 CCRCC miRNA-Seq tumor CPT0115350006 4f873559-5e37-451d-8b35-a2f53758f34a_mirnaseq_gdc_realn.bam 246072936 BAM harmonized CPTAC3 758dc808-ce43-4829-a7a7-499d1adc5f04 f790abeaed9d1d34183de0750ea1974b {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor"} -C3N-02015.RNA-Seq.chimeric.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.chimeric.gdc_realn.bam 37313205 BAM chimeric harmonized CPTAC3 9875229c-c4ab-4e86-ae87-7d600c29606f f984bc9d836d16be14e66f9e614df56a {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor"} -C3N-02015.RNA-Seq.genomic.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.genomic.gdc_realn.bam 9784184583 BAM genomic harmonized CPTAC3 bcf7b49d-d594-42b0-8889-a4dead890403 1524168f4619fd80e9b43dcd4a17defe {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor"} -C3N-02015.RNA-Seq.S23_L006_R1.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4434486962 FASTQ S23_L006_R1 unaligned CPTAC3 ab5b95fe-7549-4a39-ba52-98d1fdd97c6f c2bf33b5b68984a3cfdd5210a1e76a7e {"aliquot_tag": "ALQ_36393c5c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02015.RNA-Seq.S23_L006_R2.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4922661565 FASTQ S23_L006_R2 unaligned CPTAC3 41a48780-0805-4c99-83d5-4b0edf135893 54f11ebc6c92916f20a66472cabb507f {"aliquot_tag": "ALQ_36393c5c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02015.RNA-Seq.transcriptome.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.transcriptome.gdc_realn.bam 12681307061 BAM transcriptome harmonized CPTAC3 7ab1e3bc-8b5a-465f-ba19-088765b09250 77697b9a7cfda9f1843f3a841932a23d {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor"} -C3N-02015.WGS.N C3N-02015 CCRCC WGS blood_normal CPT0116350002 CPT0116350002.WholeGenome.RP-1303.bam 71914756446 BAM aligned CPTAC3 6dd204de-1555-4cba-8848-6d9372621a05 dad976e98f091db84c3e5d72f2ad1a05 {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02015.WGS.N.hg38 C3N-02015 CCRCC WGS blood_normal CPT0116350002 b8cb0095-4cbe-4459-a92e-436d4dac96dd_wgs_gdc_realn.bam 106378410715 BAM harmonized CPTAC3 aa254bc8-36f8-4b03-877d-84e51f082537 b97b570ddd7f4c9721b1ec96576441ae {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02015.WGS.T C3N-02015 CCRCC WGS tumor CPT0115350009 CPT0115350009.WholeGenome.RP-1303.bam 57749479306 BAM aligned CPTAC3 c94cd4f7-607f-473e-ab11-d2371df1983f 7d0be0b54fa95742157c62afec73d21a {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor"} -C3N-02015.WGS.T.hg38 C3N-02015 CCRCC WGS tumor CPT0115350009 51501cd8-6fd3-4be0-8012-0360affa0519_wgs_gdc_realn.bam 83736800799 BAM harmonized CPTAC3 c52e298d-7b73-4343-a4ca-b0b75ed0317e 4f131e37a92e068bf7d1fc95484ed64a {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor"} -C3N-02015.WXS.N C3N-02015 CCRCC WXS blood_normal CPT0116350002 CPT0116350002.WholeExome.RP-1303.bam 32734900944 BAM aligned CPTAC3 b17f5d0e-b3bc-44a4-b9c9-4caf77670b4d 203ad4538fa76b4a245cb83796ca2996 {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02015.WXS.N.hg38 C3N-02015 CCRCC WXS blood_normal CPT0116350002 b8cb0095-4cbe-4459-a92e-436d4dac96dd_wxs_gdc_realn.bam 45895765263 BAM harmonized CPTAC3 ac34ed55-1ecb-42d9-8f6e-62f481a84ffa 389c2daa417abce3e1c24a3a14b651b5 {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02015.WXS.T C3N-02015 CCRCC WXS tumor CPT0115350009 CPT0115350009.WholeExome.RP-1303.bam 23113584357 BAM aligned CPTAC3 34535d65-9338-4186-a33c-8b91319f01aa 1d10078745ad3798f65403fac6e95c0d {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor"} -C3N-02015.WXS.T.hg38 C3N-02015 CCRCC WXS tumor CPT0115350009 51501cd8-6fd3-4be0-8012-0360affa0519_wxs_gdc_realn.bam 30882516573 BAM harmonized CPTAC3 be150359-5e01-407b-9b7f-6e1c074e10db 1cd6e40d1d0641915066620fe0fe420b {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor"} -C3N-02027.MethArray.Green.T C3N-02027 UCEC Methylation_Array tumor CPT0133400011 203561450017_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bd6816d9-665b-4f88-b95c-6822d046b682 571bbbab048733225213ec06067d0cde {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor"} -C3N-02027.MethArray.Red.T C3N-02027 UCEC Methylation_Array tumor CPT0133400011 203561450017_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 a448da82-b138-478c-94bf-a5785f24ad76 b9322a2c9ef267921ebcfee171a4ea4b {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor"} -C3N-02027.miRNA-Seq.S4_L003_R1.T C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L003_R1_001.unaln.bam 267214195 BAM S4_L003_R1 unaligned CPTAC3 d62d9a02-c8ae-4dcd-a89a-8c1e542611ea 89190d59d0471cebb1e3254d96d80f15 {"aliquot_tag": "ALQ_353ce1be", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02027.miRNA-Seq.T.hg38 C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 14f86eba-fedf-45e7-b1cc-f2ddefc0b7f9_mirnaseq_gdc_realn.bam 320737998 BAM harmonized CPTAC3 a534a26d-c55c-4c4e-b00f-549ff9a374e3 c54c79762e24827f6f7c144bae7c68b5 {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.chimeric.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.chimeric.gdc_realn.bam 38771611 BAM chimeric harmonized CPTAC3 ad11f368-b786-442e-b995-3ddef8976552 253fe326ab4d5a6f3b88738caaebd3a0 {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.chimeric.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.chimeric.gdc_realn.bam 226156282 BAM chimeric harmonized CPTAC3 15dd3a58-107e-4dc6-951a-606c6f63839d aa6ba0a4a791d61612d50c394d7b5b67 {"aliquot_tag": "ALQ_a9cd82b0", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.genomic.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.genomic.gdc_realn.bam 8843144736 BAM genomic harmonized CPTAC3 1d579ff0-0be7-4628-89f9-d4b2cb49545c 05d94b3667050498d26c64df06d9e351 {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.genomic.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.genomic.gdc_realn.bam 10039392240 BAM genomic harmonized CPTAC3 704b7a79-9c93-4777-ab04-6e86db46cc74 c476981e9e7406ada8c3d06414a6f414 {"aliquot_tag": "ALQ_a9cd82b0", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.S60_R1.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R1_001.fastq.gz 6362363770 FASTQ S60_R1 unaligned CPTAC3 218324f9-bf29-41d6-97d5-401ce2f8df81 0a9d6105f54b5d277e936599bff4bda4 {"aliquot_tag": "ALQ_a9cd82b0", "sample": "S60", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.S60_R2.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R2_001.fastq.gz 6537001973 FASTQ S60_R2 unaligned CPTAC3 6e66bc80-8132-4358-bb81-ce52ac94db83 f5b870bf2464d4035cea2762a52da149 {"aliquot_tag": "ALQ_a9cd82b0", "sample": "S60", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.S7_L002_R1.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R1_001.fastq.gz 4213763179 FASTQ S7_L002_R1 unaligned CPTAC3 c3cc9a23-200c-4a9f-8c0e-3813c6df63fd 6b6d91d1289d749e761a00226b9178c1 {"aliquot_tag": "ALQ_353ce1be", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.S7_L002_R2.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R2_001.fastq.gz 4830339139 FASTQ S7_L002_R2 unaligned CPTAC3 b2b3f26a-8a38-4315-a1a5-ab0c74194a58 8402fb555113b0bc0c74b641941f0caf {"aliquot_tag": "ALQ_353ce1be", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.transcriptome.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.transcriptome.gdc_realn.bam 10567540668 BAM transcriptome harmonized CPTAC3 6dd75490-b972-4d54-a8ff-94158e4682d7 f0b758fbf6f72055a383c72016455dde {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor"} -C3N-02027.RNA-Seq.transcriptome.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.transcriptome.gdc_realn.bam 8209264200 BAM transcriptome harmonized CPTAC3 403f0924-1c3d-4d68-b8f4-23e846e87f4b 703b95afb54df135562322e48b031ecd {"aliquot_tag": "ALQ_a9cd82b0", "gdc_sample_type": "Primary Tumor"} -C3N-02027.WGS.N C3N-02027 UCEC WGS blood_normal CPT0133520002 CPT0133520002.WholeGenome.RP-1303.bam 56441091181 BAM aligned CPTAC3 51e78953-143d-49ae-9d5f-edacdcfd8f8b 4fac949711890ab4f577dd6499f29031 {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02027.WGS.N.hg38 C3N-02027 UCEC WGS blood_normal CPT0133520002 e17ffaae-a211-4d56-8412-dc0563c72044_wgs_gdc_realn.bam 82064450975 BAM harmonized CPTAC3 d3258f4e-315e-4987-877d-9f6e62bc6e39 1514b6841d86692cbce4eb357d1e91cc {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02027.WGS.T C3N-02027 UCEC WGS tumor CPT0133400011 CPT0133400011.WholeGenome.RP-1303.bam 68361661481 BAM aligned CPTAC3 315a4c3c-f57e-4430-9122-4c83673c465a 9440ec3823b8d2b129af8bf30b5b535f {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor"} -C3N-02027.WGS.T.hg38 C3N-02027 UCEC WGS tumor CPT0133400011 abd04eab-b42e-48ed-81cb-f6c81fcb6410_wgs_gdc_realn.bam 99482783512 BAM harmonized CPTAC3 5af5cdf7-f8e0-4297-82ff-a00c5047e953 ab0bf22bd9c3cc19fb23b77139f2d3db {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor"} -C3N-02027.WXS.N C3N-02027 UCEC WXS blood_normal CPT0133520002 CPT0133520002.WholeExome.RP-1303.bam 25510561164 BAM aligned CPTAC3 8b15b080-7589-426e-a3d9-8c327ff0430a 1d2e67c0aa80e31ae59fc05947fff15a {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02027.WXS.N.hg38 C3N-02027 UCEC WXS blood_normal CPT0133520002 e17ffaae-a211-4d56-8412-dc0563c72044_wxs_gdc_realn.bam 34428733491 BAM harmonized CPTAC3 23c57dce-a4f7-4c75-b73d-c288630b1130 f616576e9e5f92d539aa459c0b36478b {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02027.WXS.T C3N-02027 UCEC WXS tumor CPT0133400011 CPT0133400011.WholeExome.RP-1303.bam 23556439712 BAM aligned CPTAC3 4e658ebb-e2af-4a90-8cf7-80efae5508a8 96430c3c0cdb8f41a8bc798f94e3fe4f {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor"} -C3N-02027.WXS.T.hg38 C3N-02027 UCEC WXS tumor CPT0133400011 abd04eab-b42e-48ed-81cb-f6c81fcb6410_wxs_gdc_realn.bam 33414535569 BAM harmonized CPTAC3 900b16a1-b1b1-4725-88a8-44250d99f964 c401d9297c26d8da02dadd8cf526d10b {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor"} -C3N-02028.MethArray.Green.T C3N-02028 UCEC Methylation_Array tumor CPT0133600006 203561450084_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b4f15ed7-7b09-4491-a1dc-0a28fc0e3416 afef9e71655062d14eccd8ec4c3e389d {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor"} -C3N-02028.MethArray.Red.T C3N-02028 UCEC Methylation_Array tumor CPT0133600006 203561450084_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 90202837-7ff2-4fd5-9f16-01fc95f0afb7 8a45afa9084adcd1cc07568951443344 {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor"} -C3N-02028.miRNA-Seq.S158_L008_R1.T C3N-02028 UCEC miRNA-Seq tumor CPT0133600009 190828_UNC32-K00270_0200_BH7GVJBBXY_GATCAG_S158_L008_R1_001.unaln.bam 245615074 BAM S158_L008_R1 unaligned CPTAC3 a1cb3f88-5e06-4ee2-a84c-3873e92e8ff1 21e5924005e3e1dda3eb2df26ebf5de6 {"aliquot_tag": "ALQ_1f5e0d49", "sample": "S158", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02028.miRNA-Seq.T.hg38 C3N-02028 UCEC miRNA-Seq tumor CPT0133600009 8b5611b3-8514-45a2-9da9-1b8e12950072_mirnaseq_gdc_realn.bam 284865569 BAM harmonized CPTAC3 29ce5fca-55fe-40ee-ab45-a3e9e066c51a be27a7f8f13817f981a41317378c9443 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.chimeric.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.chimeric.gdc_realn.bam 30956405 BAM chimeric harmonized CPTAC3 197ccea0-b15c-448f-900c-424bc3a83d7c 141cc620ed6e1eda266c529f25dc1dc6 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.chimeric.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.chimeric.gdc_realn.bam 156211335 BAM chimeric harmonized CPTAC3 6c6a235b-dd86-473e-a757-110e35618ead 1b4301708059edee2ea7046aeec366f3 {"aliquot_tag": "ALQ_e40523bb", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.genomic.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.genomic.gdc_realn.bam 7181248789 BAM genomic harmonized CPTAC3 5225222f-9e2d-4e54-a3b8-99258979657b 4bfc3ecf3a505d3b713d09cd68d69bd1 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.genomic.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.genomic.gdc_realn.bam 9863924962 BAM genomic harmonized CPTAC3 ad6e60dc-0d7d-42c6-a5f0-dfa543cb0069 a175867ec5606b19fbe6e8df130e775e {"aliquot_tag": "ALQ_e40523bb", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.S29_R1.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R1_001.fastq.gz 4540371632 FASTQ S29_R1 unaligned CPTAC3 57c9d0ae-35a1-486a-91f2-3808b604d575 b67311db308c308b5745d572a4cf99a7 {"aliquot_tag": "ALQ_e40523bb", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.S29_R2.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R2_001.fastq.gz 4614180178 FASTQ S29_R2 unaligned CPTAC3 ffcce01f-72a5-469e-a539-632cf9d07034 60900b86c40a609e99a11414106476da {"aliquot_tag": "ALQ_e40523bb", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.S3_L001_R1.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R1_001.fastq.gz 3512432283 FASTQ S3_L001_R1 unaligned CPTAC3 650a35d7-7d5f-47ae-a9fd-2261d3728c3d b1d93aa30f971e02a3dddfebfc8e45a9 {"aliquot_tag": "ALQ_1f5e0d49", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.S3_L001_R2.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R2_001.fastq.gz 3591655345 FASTQ S3_L001_R2 unaligned CPTAC3 db4c185c-4d8b-4d80-9eea-8098e257a7f8 f919f02b0f86819648884a480ffb3bc9 {"aliquot_tag": "ALQ_1f5e0d49", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.transcriptome.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.transcriptome.gdc_realn.bam 8956319743 BAM transcriptome harmonized CPTAC3 ff56a1f6-c107-4321-a06d-f5e375a223c5 d343b2bbe8b643a92be56357ae3ebb24 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor"} -C3N-02028.RNA-Seq.transcriptome.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.transcriptome.gdc_realn.bam 3756727545 BAM transcriptome harmonized CPTAC3 7d75bd08-5ca3-487a-9548-cde4c237d366 843fa844aabcf3c83d62f7a280a74462 {"aliquot_tag": "ALQ_e40523bb", "gdc_sample_type": "Primary Tumor"} -C3N-02028.WGS.N C3N-02028 UCEC WGS blood_normal CPT0133700002 CPT0133700002.WholeGenome.RP-1303.bam 89239370891 BAM aligned CPTAC3 7ee706af-a536-4e16-bbf9-27be0b29075b 957a830dc3c16af9e8a0cecb38bba289 {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02028.WGS.N.hg38 C3N-02028 UCEC WGS blood_normal CPT0133700002 7ca9695f-4331-43c0-af16-09fc88247605_wgs_gdc_realn.bam 129489764987 BAM harmonized CPTAC3 e249d843-17df-4561-9601-9d5fc2c010f9 e5f8375efaa254c3a3ab6d3daa9590ef {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02028.WGS.T C3N-02028 UCEC WGS tumor CPT0133600006 CPT0133600006.WholeGenome.RP-1303.bam 91559372318 BAM aligned CPTAC3 55f34b5c-1d7c-4ea2-8e91-d7d40a3149f4 2f94fc56659351cb8207d0e7ce3de143 {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor"} -C3N-02028.WGS.T.hg38 C3N-02028 UCEC WGS tumor CPT0133600006 8e786c46-68d2-4c88-80ce-479ff84b737a_wgs_gdc_realn.bam 132464736886 BAM harmonized CPTAC3 8282b5a4-cb70-4721-9266-7a98ef007c7d 6f1f61ecf57a97bc2a96047ed5ccecee {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor"} -C3N-02028.WXS.N C3N-02028 UCEC WXS blood_normal CPT0133700002 CPT0133700002.WholeExome.RP-1303.bam 33730456353 BAM aligned CPTAC3 d45d65cd-1164-473d-a418-c658b3d00efc 1f3dedf9be8ffe91b007b3048a897525 {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02028.WXS.N.hg38 C3N-02028 UCEC WXS blood_normal CPT0133700002 7ca9695f-4331-43c0-af16-09fc88247605_wxs_gdc_realn.bam 46322276387 BAM harmonized CPTAC3 7dba5f79-10d3-40bf-bf2e-313e75648a56 24ff6b265761cfed2c2d8154f1d6982f {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02028.WXS.T C3N-02028 UCEC WXS tumor CPT0133600006 CPT0133600006.WholeExome.RP-1303.bam 20299901395 BAM aligned CPTAC3 502127ce-e17b-4392-8c4e-8ae350a52ff7 e2bb652827f57ece8371d4c2e328c15b {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor"} -C3N-02028.WXS.T.hg38 C3N-02028 UCEC WXS tumor CPT0133600006 8e786c46-68d2-4c88-80ce-479ff84b737a_wxs_gdc_realn.bam 28292657787 BAM harmonized CPTAC3 14be1940-8f7a-4a7f-ae13-df21f70ae11a 4150446b035d98312ed60c4ab7b3e332 {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_1ad835b9.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.chimeric.gdc_realn.bam 154075949 BAM chimeric harmonized CPTAC3 2ab0bceb-e5c1-4a92-9f8f-b24441fd6acd eaaa52ec1e895bba626dc59b1cccbe97 {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_1ad835b9.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.genomic.gdc_realn.bam 9224759649 BAM genomic harmonized CPTAC3 2726b697-bb96-4e45-88af-8df8dc4d93a1 c1687b97c4e6728a985ef1c48bb7a44b {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_1ad835b9.RNA-Seq.S5_L002_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R1_001.fastq.gz 3961602699 FASTQ S5_L002_R1 unaligned CPTAC3 5ad5897e-92b3-47e6-8312-699a61fc5136 2e1fb3e955b95ba27f59a8fbaf7a9d18 {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_1ad835b9.RNA-Seq.S5_L002_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R2_001.fastq.gz 4349735026 FASTQ S5_L002_R2 unaligned CPTAC3 a8d02375-61bb-4f66-b57e-b81abb4e38d4 89bea8da76d485adf118d330bca74fbb {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_1ad835b9.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.transcriptome.gdc_realn.bam 5564656279 BAM transcriptome harmonized CPTAC3 265609a2-44fb-4fb0-958f-940b5771e099 e7f080d76dfae198416e145993247b35 {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_251d530e.WXS.T C3N-02030 UCEC WXS tumor CPT0133780085 CPT0133780085.WholeExome.RP-1303.bam 21577329994 BAM aligned CPTAC3 dca9eda1-806d-4914-80df-806beca61919 f59507d0fad331a7800f51f02163463a {"aliquot_tag": "DUP_251d530e", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_251d530e.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780085 d8179cc9-97e8-42a6-8839-778705458d3e_wxs_gdc_realn.bam 29605838581 BAM harmonized CPTAC3 dff2a285-3794-4f83-95b1-22d38ec2a3e4 ae538a59cc87271f3b3e8b4e4047eca2 {"aliquot_tag": "DUP_251d530e", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_2cab1f25.WXS.T C3N-02030 UCEC WXS tumor CPT0133780089 CPT0133780089.WholeExome.RP-1303.bam 25266670340 BAM aligned CPTAC3 83932d96-4b3d-4005-a5e5-c01745ca1d73 333483b5d6760d2b138233657fde8e52 {"aliquot_tag": "DUP_2cab1f25", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_2cab1f25.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780089 88052f71-e18e-4efa-92ed-f71f272f2cb2_wxs_gdc_realn.bam 34293520564 BAM harmonized CPTAC3 3862f1d3-4e2a-47d6-8d4e-174885e130ec 4e024dafe384aaf582ee177ad94c85b5 {"aliquot_tag": "DUP_2cab1f25", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b6ba656.WGS.T C3N-02030 UCEC WGS tumor CPT0133780091 CPT0133780091.WholeGenome.RP-2158.bam 30001609723 BAM aligned CPTAC3 72051de1-573d-43b4-b4ae-c0ab9171756e e9a381f1b2f5fb7b48b9b86c03463bca {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b6ba656.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133780091 dbd52ff5-66e8-40d5-a19b-6cdfb27721e4_wgs_gdc_realn.bam 86147208736 BAM harmonized CPTAC3 9c2855bb-1dc7-4f7d-9718-fe4353cd1759 d8b8f8f99495b263bc7ca44e9c0a4f83 {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b6ba656.WXS.T C3N-02030 UCEC WXS tumor CPT0133780091 CPT0133780091.WholeExome.RP-1303.bam 20663772908 BAM aligned CPTAC3 7ed3de68-efac-4557-a0df-9e47e12dbeae 8bcda8434ac6a139f2c8a3d6e2e0f71c {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b6ba656.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780091 dbd52ff5-66e8-40d5-a19b-6cdfb27721e4_wxs_gdc_realn.bam 28486630304 BAM harmonized CPTAC3 25b66613-911b-4521-902d-66015177acb7 b14dd8d92a5ab70e4bfd158bdaca6ec2 {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b8c1e7b.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.chimeric.gdc_realn.bam 286645236 BAM chimeric harmonized CPTAC3 d262c419-7255-445f-a933-d869a891a174 cf58b164ac15bfa61b5e38b3f7c65cbf {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b8c1e7b.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.genomic.gdc_realn.bam 11508641502 BAM genomic harmonized CPTAC3 cc71456f-b4dc-4094-afc5-e847d8843898 b1a3d8c883824841ed213513a60c927e {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b8c1e7b.RNA-Seq.S2_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4709238926 FASTQ S2_L001_R1 unaligned CPTAC3 d2e5a5ef-168b-4eee-80a3-2d7910c501b5 fa77d5dd36a6977ed864d09816d221ce {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b8c1e7b.RNA-Seq.S2_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5336664080 FASTQ S2_L001_R2 unaligned CPTAC3 2cd879a9-b2a5-4bdd-9dcb-77e006ecaff8 ff82d64811164b98b54bc2eb04db7df4 {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_3b8c1e7b.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.transcriptome.gdc_realn.bam 4769238916 BAM transcriptome harmonized CPTAC3 87dbca4c-b385-49a3-8b71-caf026ed20bf 3a253a7f9fafd7acb9b1c071475666f8 {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_44978cc.WGS.T C3N-02030 UCEC WGS tumor CPT0133760082 CPT0133760082.WholeGenome.RP-2158.bam 30949053164 BAM aligned CPTAC3 c77518b5-e0c8-406e-9329-07c68c7d61ca 0e1ef9b9b1fc8d9b088bc5a8aa5546fb {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_44978cc.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760082 e64aabb6-f30a-4466-958c-14a07d5d7e3f_wgs_gdc_realn.bam 91538682587 BAM harmonized CPTAC3 0d155398-634d-4993-a4ed-cdae99518bae f2c84c4619cdaef053b265054aca8b0b {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_44978cc.WXS.T C3N-02030 UCEC WXS tumor CPT0133760082 CPT0133760082.WholeExome.RP-1303.bam 25220285181 BAM aligned CPTAC3 ac1f0679-c216-42e3-b30d-94708066bdd6 76c4a7268eed2916e9e6b6ff48ae997e {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_44978cc.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760082 e64aabb6-f30a-4466-958c-14a07d5d7e3f_wxs_gdc_realn.bam 34352310115 BAM harmonized CPTAC3 7321f870-b841-475d-902c-f7e3f6fcd697 d114cb61e31f6753f3554f6a588e3ce3 {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4aec0e1.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.chimeric.gdc_realn.bam 214596980 BAM chimeric harmonized CPTAC3 c436052a-bcdc-4912-ab85-23c5d83fbab5 366c62378b359f7ebe7e25462a5b358a {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4aec0e1.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.genomic.gdc_realn.bam 8836919717 BAM genomic harmonized CPTAC3 6c71d1b8-5128-43c2-a2c3-771d7d85f39d 7f833f2312339ebd5b6b5eb0089bd561 {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4aec0e1.RNA-Seq.S11_L003_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R1_001.fastq.gz 3891952742 FASTQ S11_L003_R1 unaligned CPTAC3 bac36753-12a5-4b17-a95b-628317566e97 121ffaaf4a940f2e4f8c6cf071556cde {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4aec0e1.RNA-Seq.S11_L003_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R2_001.fastq.gz 4293519061 FASTQ S11_L003_R2 unaligned CPTAC3 80bb4040-ac35-42eb-afb0-a961027bc4de 29194e4acb96fe14894f620c9afec4ac {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4aec0e1.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.transcriptome.gdc_realn.bam 5927790434 BAM transcriptome harmonized CPTAC3 67281b68-72d0-493d-a614-16d5345fe604 8bc8cad8ea1ad1e7d4af1cb652f082ad {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4be6eaf4.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.chimeric.gdc_realn.bam 455028579 BAM chimeric harmonized CPTAC3 a773fc0b-afa1-40a9-a890-94b8cb1bf085 b43b3e314c84b9959922e6de8ca9b36a {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4be6eaf4.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.genomic.gdc_realn.bam 13119649724 BAM genomic harmonized CPTAC3 720c0dc1-51c8-4e38-b460-99e18a583082 8bf9c44c49069fcd813b43d2defcb9f1 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4be6eaf4.RNA-Seq.S1_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 5251570745 FASTQ S1_L001_R1 unaligned CPTAC3 07069cd0-9954-4076-b91e-619b40f4433e 6217af3aeafb6445a8d79e8fd604ceb5 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4be6eaf4.RNA-Seq.S1_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 5905196935 FASTQ S1_L001_R2 unaligned CPTAC3 0f2b5b23-32e9-4675-84ab-85fe96dd5c94 71be54125451f4e81aab938fff150ce7 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4be6eaf4.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.transcriptome.gdc_realn.bam 6077931898 BAM transcriptome harmonized CPTAC3 33e7f4e0-1de3-472b-b36a-3e51f29c89a5 ae340cbe750bcd27235a0d2d911391d9 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4c6c96c0.WXS.T C3N-02030 UCEC WXS tumor CPT0133780090 CPT0133780090.WholeExome.RP-1303.bam 30268747107 BAM aligned CPTAC3 3480f6d3-ab17-4ee8-891f-f19e29693499 26c51e36419e541adb2e5b506fe22498 {"aliquot_tag": "DUP_4c6c96c0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_4c6c96c0.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780090 b441401d-5964-4d23-b1f8-304a677e5d14_wxs_gdc_realn.bam 41853619347 BAM harmonized CPTAC3 51af4f26-9a93-4779-b2a9-89237d338f7f e1d2f0ee7f692c439c8fc3d3ac04ac5e {"aliquot_tag": "DUP_4c6c96c0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_63048d1d.WGS.T C3N-02030 UCEC WGS tumor CPT0133760078 CPT0133760078.WholeGenome.RP-2158.bam 17147710287 BAM aligned CPTAC3 eeab7ce9-56b8-499a-a396-0f605d09735c ba21b9972631b4ba1190190784b0d7ab {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_63048d1d.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760078 271f937c-0f6e-4fe0-bcab-bc0edfab4f76_wgs_gdc_realn.bam 50422331604 BAM harmonized CPTAC3 8be06db8-a0a0-443b-be0d-223011fcfa99 b9363b4da43e60bd1e8834ebfce89ebb {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_63048d1d.WXS.T C3N-02030 UCEC WXS tumor CPT0133760078 CPT0133760078.WholeExome.RP-1303.bam 23013761461 BAM aligned CPTAC3 ddeb3e8e-7e76-4413-8a5b-e3dbc9cc8911 e73b57883766bfe2bb23b02de432166f {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_63048d1d.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760078 271f937c-0f6e-4fe0-bcab-bc0edfab4f76_wxs_gdc_realn.bam 32112930851 BAM harmonized CPTAC3 6a5e0b24-faa2-4c5d-afa0-fa2936ad11fc c7b5bf05329a367bad1825307e1421d9 {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_734e485a.WGS.T C3N-02030 UCEC WGS tumor CPT0133760083 CPT0133760083.WholeGenome.RP-2158.bam 15754014827 BAM aligned CPTAC3 676124cb-fee7-4248-859d-4f94274171a8 f81b7b3094dc617f952620aad7931839 {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_734e485a.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760083 7913b077-d539-41c8-8060-1ef6258df54c_wgs_gdc_realn.bam 46070776825 BAM harmonized CPTAC3 5a9899f1-8a2a-4cc8-8d6e-e0c832b52b5a eb2596384d886f06a0474ad4be8a821a {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_734e485a.WXS.T C3N-02030 UCEC WXS tumor CPT0133760083 CPT0133760083.WholeExome.RP-1303.bam 21284909798 BAM aligned CPTAC3 4b4e95a9-140a-44b3-aade-d1b94252bba5 787b468e1163db4a2db86f6a5bfa6cbb {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_734e485a.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760083 7913b077-d539-41c8-8060-1ef6258df54c_wxs_gdc_realn.bam 29071173979 BAM harmonized CPTAC3 5f5ba4a2-1f4f-4e72-bd65-d8bb36eeb059 a8f8ef573b4b5ca56e786275303d128e {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_7a1fbc5c.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.chimeric.gdc_realn.bam 164417489 BAM chimeric harmonized CPTAC3 1c1d948b-7f2f-4850-afde-dd89afda7ccf c14b83e5990cd7593486f453469e7ed7 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_7a1fbc5c.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.genomic.gdc_realn.bam 8894981310 BAM genomic harmonized CPTAC3 e13cdcfa-37c0-4a03-9e67-c34b54f2e562 27565909e026fe9c9b7463cfab667003 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_7a1fbc5c.RNA-Seq.S4_L002_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R1_001.fastq.gz 3650759312 FASTQ S4_L002_R1 unaligned CPTAC3 bc77c5b2-bb5b-4b41-ba1e-e7fe70d26030 2719d1cd5f302ea0299ef775023b07a0 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_7a1fbc5c.RNA-Seq.S4_L002_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R2_001.fastq.gz 3948002383 FASTQ S4_L002_R2 unaligned CPTAC3 ca28739a-4a7e-4bf1-82f8-421b65b9be40 08c8c91c7692c9ae924a5cf646d0b411 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_7a1fbc5c.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.transcriptome.gdc_realn.bam 3889777987 BAM transcriptome harmonized CPTAC3 23fbe2c3-5ae8-4075-bf3c-53a5e9fe1161 781985d8f4e6c53049a89644e772b7d0 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_84bca01a.WGS.T C3N-02030 UCEC WGS tumor CPT0133760076 CPT0133760076.WholeGenome.RP-2158.bam 25052943166 BAM aligned CPTAC3 1c747cee-a357-4da4-bea9-96454dbfd420 16d8b09b2614d85f816d49047195edb0 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_84bca01a.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760076 0adb5230-01ea-46f3-8f0a-ae7d91d4c4e6_wgs_gdc_realn.bam 75297593539 BAM harmonized CPTAC3 199d9247-71a4-4efb-94d1-3ce66012b272 f184f1fb20523886349420c129b0dbd5 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_84bca01a.WXS.T C3N-02030 UCEC WXS tumor CPT0133760076 CPT0133760076.WholeExome.RP-1303.bam 29426464494 BAM aligned CPTAC3 249d3a65-6ae3-4c88-a18e-574a63822f58 86764c18b30299620b9aefb171dbc1a7 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_84bca01a.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760076 0adb5230-01ea-46f3-8f0a-ae7d91d4c4e6_wxs_gdc_realn.bam 40589787215 BAM harmonized CPTAC3 80bde6d6-cd8c-460d-ad2a-59f25c126a84 6edb21ff636d719ebfad317acf5eaf06 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_9d402976.WXS.T C3N-02030 UCEC WXS tumor CPT0133760081 CPT0133760081.WholeExome.RP-1303.bam 18755430222 BAM aligned CPTAC3 f1b0758b-aee9-4452-ac1b-0078fd3c2b75 b1f3976bd734a98860ea5c127e98bc94 {"aliquot_tag": "DUP_9d402976", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_9d402976.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760081 f2304480-635b-405f-ae51-e019c472b798_wxs_gdc_realn.bam 26087738138 BAM harmonized CPTAC3 93b62f09-7ced-4013-844f-91e3f7e30e47 358262f4ce641c1c252c966dcec8369b {"aliquot_tag": "DUP_9d402976", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_a262f7ec.WXS.T C3N-02030 UCEC WXS tumor CPT0133780092 CPT0133780092.WholeExome.RP-1303.bam 15210456768 BAM aligned CPTAC3 c234274d-e4af-4984-90a2-2e6e94b86c4f 349cd260d0f7511efd2b791bc2c9ebe9 {"aliquot_tag": "DUP_a262f7ec", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_a262f7ec.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780092 4811084b-1a9d-46c1-b3c9-702e65cbaf56_wxs_gdc_realn.bam 21424219326 BAM harmonized CPTAC3 61c562aa-afc1-4d23-8a43-1f4a1c236c05 7dbdba91e58f1c7c7bc06ce11c04a0f4 {"aliquot_tag": "DUP_a262f7ec", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ab3303ea.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.chimeric.gdc_realn.bam 172509214 BAM chimeric harmonized CPTAC3 35dcd42e-dfc3-41d3-bf05-50b9fee9fb1a 876b37294c6573a9e681261e6023ea2d {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ab3303ea.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.genomic.gdc_realn.bam 10853662920 BAM genomic harmonized CPTAC3 bc39032e-5e9c-4997-9594-721ddca43d69 9f657977209e8dade728faec1de212c3 {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ab3303ea.RNA-Seq.S3_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 4507887248 FASTQ S3_L001_R1 unaligned CPTAC3 45e801c2-3bc4-4d2c-890c-772839aaf7ef 232796b9f856d0d466cd02066c402e3e {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ab3303ea.RNA-Seq.S3_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 5086401011 FASTQ S3_L001_R2 unaligned CPTAC3 a7184ebc-94ac-457c-9cc9-6287d3732955 41fa1b6c88b4e837b5e35662fcae0829 {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ab3303ea.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.transcriptome.gdc_realn.bam 7579814827 BAM transcriptome harmonized CPTAC3 ff69390f-77c7-462f-9e2d-49117c935c50 5a8047e1dd3cae5bfbc1064632f0ed48 {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_cb133222.WXS.T C3N-02030 UCEC WXS tumor CPT0133780087 CPT0133780087.WholeExome.RP-1303.bam 24860634954 BAM aligned CPTAC3 080a9922-fb39-4838-ad16-6f68c827f3e6 405ef118010316043ad76ab7630524bd {"aliquot_tag": "DUP_cb133222", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_cb133222.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780087 efc3430c-64c2-419e-874c-27cffb89aba0_wxs_gdc_realn.bam 34308858972 BAM harmonized CPTAC3 7d70a4be-94eb-4d3d-9e77-e71f30ec6ba0 e3da2f573608fbda9b712d817fdb77fe {"aliquot_tag": "DUP_cb133222", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ea4719e0.WGS.T C3N-02030 UCEC WGS tumor CPT0133760080 CPT0133760080.WholeGenome.RP-2158.bam 20531550838 BAM aligned CPTAC3 8b5f2a0d-287d-477d-9677-a3b452b10d02 1ac8fa20b65c92e02b4f5a6f1eb46be5 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ea4719e0.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760080 07ab6239-d919-4d50-9be4-842845513886_wgs_gdc_realn.bam 60009864616 BAM harmonized CPTAC3 f77935dd-966f-4f62-aaaa-909fbed01106 be22127d92d1c1406d4d8ab3533ecd96 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ea4719e0.WXS.T C3N-02030 UCEC WXS tumor CPT0133760080 CPT0133760080.WholeExome.RP-1303.bam 21734675192 BAM aligned CPTAC3 8c04ed46-6362-4319-993d-9dbe7a71a969 5f83fc420bacb035468057a809ebc481 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.DUP_ea4719e0.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760080 07ab6239-d919-4d50-9be4-842845513886_wxs_gdc_realn.bam 29737516663 BAM harmonized CPTAC3 769c27a4-1f96-4d8c-a950-37d034810828 8d71cbb141f2eb7551ffd37a9ad76b62 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-02030.MethArray.Green.T C3N-02030 UCEC Methylation_Array tumor CPT0133770011 203561620087_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 98d0c5b7-0130-4fd5-9e6e-1d583207a77d c6b0aa292b12f4fd2dda45efa8108db4 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor"} -C3N-02030.MethArray.Red.T C3N-02030 UCEC Methylation_Array tumor CPT0133770011 203561620087_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e240a310-6a23-49e1-973c-0960e1c3ec41 b5be762ab131ee13c22fd2ec6702466d {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor"} -C3N-02030.miRNA-Seq.S5_L003_R1.T C3N-02030 UCEC miRNA-Seq tumor CPT0133770014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACAGTG_S5_L003_R1_001.unaln.bam 194461538 BAM S5_L003_R1 unaligned CPTAC3 700fc28c-1180-4305-a5ea-45027a60430b 5242e290b204bb0a72b8149813fb1f18 {"aliquot_tag": "ALQ_1884f00", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.miRNA-Seq.T.hg38 C3N-02030 UCEC miRNA-Seq tumor CPT0133770014 5b485b03-ddbd-4589-a450-b37b39c2756e_mirnaseq_gdc_realn.bam 220002404 BAM harmonized CPTAC3 53e7124b-718f-4f12-87fa-7883f7283601 7c73d6f0aa352cc3602159dce129825e {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.chimeric.gdc_realn.bam 33762710 BAM chimeric harmonized CPTAC3 70da8158-e86d-4dd3-83e5-a830507cd401 b02a7d7cd32830c8a24347f9df4e8de9 {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.chimeric.gdc_realn.bam 116657227 BAM chimeric harmonized CPTAC3 b583e804-ecf4-4885-b7dd-ec5c4086dbc9 ac55382684590bef543b6e9ec7314d5d {"aliquot_tag": "ALQ_16efcdbb", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.genomic.gdc_realn.bam 8146802795 BAM genomic harmonized CPTAC3 28da5b1e-9edc-44f9-8425-024b39b64041 963cce1e1c3f95be793112a99c61f6dd {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.genomic.gdc_realn.bam 9707589677 BAM genomic harmonized CPTAC3 f6befaa4-45b5-478c-8bb0-338fa755bc08 26f0d791cf7445bec12c214e1edc7ada {"aliquot_tag": "ALQ_16efcdbb", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.S24_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R1_001.fastq.gz 4925673859 FASTQ S24_R1 unaligned CPTAC3 b68b4254-4ad5-47c1-a888-7e5bfd9d2230 82c3c34380658bfc5d1f9498a0d5c4f4 {"aliquot_tag": "ALQ_16efcdbb", "sample": "S24", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.S24_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R2_001.fastq.gz 5280580142 FASTQ S24_R2 unaligned CPTAC3 e023cecb-60e1-4393-9159-6dd8d74e7c01 08ecc4ebaadd156efdab9e494311dd25 {"aliquot_tag": "ALQ_16efcdbb", "sample": "S24", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.S3_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R1_001.fastq.gz 3797075959 FASTQ S3_L001_R1 unaligned CPTAC3 235c78ef-decc-43e8-9cd2-72dc3eb0cd60 21e2472d155c465796ec6f2bb435241a {"aliquot_tag": "ALQ_1884f00", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.S3_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R2_001.fastq.gz 4388626836 FASTQ S3_L001_R2 unaligned CPTAC3 17857e63-90c3-4bc1-ac11-683694a6ec42 4ea6dccc93ab93ce0fa95f98244748e7 {"aliquot_tag": "ALQ_1884f00", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.transcriptome.gdc_realn.bam 9262388329 BAM transcriptome harmonized CPTAC3 3f60490b-a11f-45a6-bc6f-b3e1bb657296 9351df9e64ad7a8070ec090669c0fb15 {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor"} -C3N-02030.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.transcriptome.gdc_realn.bam 5670720501 BAM transcriptome harmonized CPTAC3 dfea98f4-b8c9-43bb-88e1-97caebc292f6 77837db4683e6c7e603772d14b04a0dd {"aliquot_tag": "ALQ_16efcdbb", "gdc_sample_type": "Primary Tumor"} -C3N-02030.WGS.N C3N-02030 UCEC WGS blood_normal CPT0133880002 CPT0133880002.WholeGenome.RP-1303.bam 56644630837 BAM aligned CPTAC3 215e1766-675e-4186-aef0-49dc4822aec1 00c76a434ceffe6c0dec2e26c0a9b512 {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02030.WGS.N.hg38 C3N-02030 UCEC WGS blood_normal CPT0133880002 138b1cf0-0ac2-46d6-b211-35060de01e80_wgs_gdc_realn.bam 82771416633 BAM harmonized CPTAC3 6bef4527-ba45-445e-a6da-5b29ba4e4476 071626c6d37516519d379a17e2df418d {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02030.WGS.T C3N-02030 UCEC WGS tumor CPT0133770011 CPT0133770011.WholeGenome.RP-1303.bam 59880248248 BAM aligned CPTAC3 7d97bcae-e9c5-47ca-957e-5d5e6a834605 aa437a348c9f8cc1ac913cc556e07503 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor"} -C3N-02030.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133770011 a81443de-b861-4bb8-ab23-501062de441f_wgs_gdc_realn.bam 87668734945 BAM harmonized CPTAC3 25031dfb-de49-4bc5-8937-907f5399c3de 5226a1c8942ef3bb377eb9b099fe3520 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor"} -C3N-02030.WXS.N C3N-02030 UCEC WXS blood_normal CPT0133880002 CPT0133880002.WholeExome.RP-1303.bam 21961864056 BAM aligned CPTAC3 9b6ee954-1b61-4dfa-8614-456190fc1cc9 6e87e613b1f8f26ff0c00341dc6b0a80 {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02030.WXS.N.hg38 C3N-02030 UCEC WXS blood_normal CPT0133880002 138b1cf0-0ac2-46d6-b211-35060de01e80_wxs_gdc_realn.bam 29542764494 BAM harmonized CPTAC3 c7442e46-9519-440d-b825-b49991b0afd2 afa84aa7ee2175e4fad9d4dd4796f77c {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02030.WXS.T C3N-02030 UCEC WXS tumor CPT0133770011 CPT0133770011.WholeExome.RP-1303.bam 26277217133 BAM aligned CPTAC3 9eb871bc-f6e1-4ded-ba2c-e208a32b0220 bdd33fa830733cff58f5f4f6ccf30b2e {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor"} -C3N-02030.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133770011 a81443de-b861-4bb8-ab23-501062de441f_wxs_gdc_realn.bam 37279872369 BAM harmonized CPTAC3 439aba9f-6e4b-45c4-ba30-785dabaf1d23 0a6a7483b050e7be7b1e7c0046a9f408 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor"} -C3N-02061.MethArray.Green.T C3N-02061 UCEC Methylation_Array tumor CPT0134310011 203561450046_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 02d973a2-8f47-4edd-8f95-6f3b99c0a2d5 8aac8ced04423a898b71af6fc2de0e98 {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor"} -C3N-02061.MethArray.Red.T C3N-02061 UCEC Methylation_Array tumor CPT0134310011 203561450046_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 89b1ec19-aa2e-4e6a-aab4-064c998b3e7c 92d6789381ec5e092c57d3ba9bc0871f {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor"} -C3N-02061.miRNA-Seq.S39_L004_R1.T C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTATAC_S39_L004_R1_001.unaln.bam 255391443 BAM S39_L004_R1 unaligned CPTAC3 04a69e12-15b8-44bd-b73f-c2607651671d 11fa6e1dcf54163807ed2928328ce156 {"aliquot_tag": "ALQ_d9488a13", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02061.miRNA-Seq.T.hg38 C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 c1b3e7b6-7674-41a8-bdfa-fa5c0807b65c_mirnaseq_gdc_realn.bam 289707544 BAM harmonized CPTAC3 6ba41fa9-aa08-48bc-b836-37b9bd2ace35 a61b0f233f9b04101085e2886f2bca9e {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.chimeric.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.chimeric.gdc_realn.bam 42187480 BAM chimeric harmonized CPTAC3 0dc0e20d-9957-40e7-ba00-0f3fc20a1b88 4bcd4f31acdd1eb5aa7bc7a11cfb803d {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.chimeric.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.chimeric.gdc_realn.bam 332592123 BAM chimeric harmonized CPTAC3 ca33185c-ef1b-4854-a3d9-3d6f7964242f c043ded59b0c63cf70b6cc07c70ae10a {"aliquot_tag": "ALQ_4c0fa536", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.genomic.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.genomic.gdc_realn.bam 9792323721 BAM genomic harmonized CPTAC3 213b400c-21df-44bb-bf31-7e3e1ba20ec6 2a255ea0f202c40fd1190d674a3c6bb1 {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.genomic.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.genomic.gdc_realn.bam 15071740605 BAM genomic harmonized CPTAC3 1f6e094e-93e2-4d3c-a140-96b4a3bfa5eb e5dc6db6f90a1990030d652456579089 {"aliquot_tag": "ALQ_4c0fa536", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.S1_L001_R1.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R1_001.fastq.gz 4609613795 FASTQ S1_L001_R1 unaligned CPTAC3 834a1ce4-7a33-41bf-b0ef-645a82557e31 fd297dba9a65cf8b219c9270f831fec2 {"aliquot_tag": "ALQ_d9488a13", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.S1_L001_R2.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R2_001.fastq.gz 5366879606 FASTQ S1_L001_R2 unaligned CPTAC3 2f38bdfb-0213-4a76-843d-c94203223963 907e1673bd9b8af6a2c1bddefc545f87 {"aliquot_tag": "ALQ_d9488a13", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.S73_R1.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R1_001.fastq.gz 9773795946 FASTQ S73_R1 unaligned CPTAC3 41658fc0-3421-4e41-8432-4a5c89da6f30 ee7deacae9e218a4c9c63c9a32f46137 {"aliquot_tag": "ALQ_4c0fa536", "sample": "S73", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.S73_R2.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R2_001.fastq.gz 10112047023 FASTQ S73_R2 unaligned CPTAC3 7d9506d0-5ea1-4ffb-98c0-f0d8fa633d14 7f91be60fc99705f86e2c6ef8c462113 {"aliquot_tag": "ALQ_4c0fa536", "sample": "S73", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.transcriptome.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.transcriptome.gdc_realn.bam 11512152720 BAM transcriptome harmonized CPTAC3 0ce854e4-fcac-4eb2-bdbe-4f07038f3bfc 51c60ddd1a1961012e1816f5487f943a {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor"} -C3N-02061.RNA-Seq.transcriptome.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.transcriptome.gdc_realn.bam 7919328899 BAM transcriptome harmonized CPTAC3 f258936a-65b8-4116-89d4-0e8277a09eb4 7d0882bbb841aad09c136828c8c7576f {"aliquot_tag": "ALQ_4c0fa536", "gdc_sample_type": "Primary Tumor"} -C3N-02061.WGS.N C3N-02061 UCEC WGS blood_normal CPT0134420002 CPT0134420002.WholeGenome.RP-1303.bam 78380844177 BAM aligned CPTAC3 17ee790f-8796-457a-9ca8-b5c9934c58d9 7db51d94e4fdb79c5e06517c0e89288d {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal"} -C3N-02061.WGS.N.hg38 C3N-02061 UCEC WGS blood_normal CPT0134420002 a3f680a5-4014-4b54-a23a-b952959e9e44_wgs_gdc_realn.bam 113099080074 BAM harmonized CPTAC3 88f6cea8-8738-47a4-b0cf-91ed4803c76d 72e9403d94af02c59665277d23a0afe9 {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal"} -C3N-02061.WGS.T C3N-02061 UCEC WGS tumor CPT0134310011 CPT0134310011.WholeGenome.RP-1303.bam 62515435165 BAM aligned CPTAC3 6e6798be-4fcb-499f-bbef-b6d2a7a387b0 b6706ad5f0bcc9fc7f9edc581a1cf177 {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor"} -C3N-02061.WGS.T.hg38 C3N-02061 UCEC WGS tumor CPT0134310011 70929d2b-ec21-4435-a063-570ec640d8ee_wgs_gdc_realn.bam 89842501130 BAM harmonized CPTAC3 5ef336de-1301-4710-8422-2f15cfd1b164 450489fe787b16c5f282ef18cd92c92c {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor"} -C3N-02061.WXS.N C3N-02061 UCEC WXS blood_normal CPT0134420002 CPT0134420002.WholeExome.RP-1303.bam 23649444551 BAM aligned CPTAC3 e5386a01-8f05-44b0-b3fc-7268bc2b1739 f55bcf7f65f53ddc27ebae84aaae571c {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal"} -C3N-02061.WXS.N.hg38 C3N-02061 UCEC WXS blood_normal CPT0134420002 a3f680a5-4014-4b54-a23a-b952959e9e44_wxs_gdc_realn.bam 32169313448 BAM harmonized CPTAC3 5526a4b2-bf6b-4dd6-9c8b-392e19ce56e8 cf3ea0d1e550593336546771155d0217 {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal"} -C3N-02061.WXS.T C3N-02061 UCEC WXS tumor CPT0134310011 CPT0134310011.WholeExome.RP-1303.bam 23541678257 BAM aligned CPTAC3 1bbad7f1-fe5d-4d3f-9d24-a88ce42c66a3 b3c6b2d2742e7a78675144451727ff67 {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor"} -C3N-02061.WXS.T.hg38 C3N-02061 UCEC WXS tumor CPT0134310011 70929d2b-ec21-4435-a063-570ec640d8ee_wxs_gdc_realn.bam 32525245183 BAM harmonized CPTAC3 b15d8885-f944-43a8-9cd4-b9a48615dea3 f27a0f5e12cfe270050df3f0cc72251e {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor"} -C3N-02062.MethArray.Green.T C3N-02062 UCEC Methylation_Array tumor CPT0134500006 203561450041_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7bcdf361-fec6-4026-8c5b-7478c092aa09 3caea805a6282446fffa80590cf0206e {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor"} -C3N-02062.MethArray.Red.T C3N-02062 UCEC Methylation_Array tumor CPT0134500006 203561450041_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 49b53031-7806-4a7c-985b-3d0e1a5c2526 10be4632a1287f10a7ba62c4a799f2ee {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor"} -C3N-02062.miRNA-Seq.S40_L002_R1.T C3N-02062 UCEC miRNA-Seq tumor CPT0134500009 190813_UNC32-K00270_0196_AH5MCWBBXY_GGCTAC_S40_L002_R1_001.unaln.bam 218829857 BAM S40_L002_R1 unaligned CPTAC3 ff79a027-2ce9-40fa-94df-0ed2f5c64634 06b85f37bf525ca583fc69b14d2dddcc {"aliquot_tag": "ALQ_5c6d4169", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02062.miRNA-Seq.T.hg38 C3N-02062 UCEC miRNA-Seq tumor CPT0134500009 fd53b506-4a84-447d-8499-189f4f4c1a3b_mirnaseq_gdc_realn.bam 254148082 BAM harmonized CPTAC3 0b46b752-b12b-4e89-971f-2e2e5561f0c2 4ef7c1e46e2673e31929062f8d7c4435 {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.chimeric.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.chimeric.gdc_realn.bam 40343779 BAM chimeric harmonized CPTAC3 445d3fca-3c66-48f7-97d1-6a33a0c01c52 a80518157a22637659322f7bada0c998 {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.chimeric.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.chimeric.gdc_realn.bam 174106963 BAM chimeric harmonized CPTAC3 e10869db-5455-4d06-b0bb-a5b3ff284b50 b72b3c118a6863f2a169c255334d086a {"aliquot_tag": "ALQ_a7366f9b", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.genomic.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.genomic.gdc_realn.bam 9075751203 BAM genomic harmonized CPTAC3 e5d5753d-50d4-4a94-8f29-ab211c5f0149 3520250907af5f5d01ff8b19ec145300 {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.genomic.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.genomic.gdc_realn.bam 9833068853 BAM genomic harmonized CPTAC3 28e93d4e-e834-43ca-a2f7-bae4a66c739e a3579bcd584f4bc35bc7de72ef6b8431 {"aliquot_tag": "ALQ_a7366f9b", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.S11_L006_R1.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R1_001.fastq.gz 4626237484 FASTQ S11_L006_R1 unaligned CPTAC3 5a79e76c-57d5-4946-8e5e-a93166527e5f 3728d1bcfbf2abadeb19343bd01ef286 {"aliquot_tag": "ALQ_5c6d4169", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.S11_L006_R2.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R2_001.fastq.gz 4772439781 FASTQ S11_L006_R2 unaligned CPTAC3 3e551f11-8ab1-45c5-bc56-a3c02f54a319 5b6e7dfae963ced092ad2c556e9af177 {"aliquot_tag": "ALQ_5c6d4169", "sample": "S11", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.S93_R1.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R1_001.fastq.gz 4606445718 FASTQ S93_R1 unaligned CPTAC3 e87d33d0-b7c4-45cc-9b59-f9304340653c c88ebc06bcdd8e129f6b1512709982b0 {"aliquot_tag": "ALQ_a7366f9b", "sample": "S93", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.S93_R2.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R2_001.fastq.gz 4759032552 FASTQ S93_R2 unaligned CPTAC3 ab791165-813a-4d98-bf6d-8c26e849beeb eae1014759cb40b9558e3be7e5ad76b6 {"aliquot_tag": "ALQ_a7366f9b", "sample": "S93", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.transcriptome.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.transcriptome.gdc_realn.bam 11924654707 BAM transcriptome harmonized CPTAC3 5b7ee737-7dbd-4dbd-9cf7-a37333068d82 1858a1f0aa3f954593d1754f4be8a2de {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor"} -C3N-02062.RNA-Seq.transcriptome.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.transcriptome.gdc_realn.bam 3809961853 BAM transcriptome harmonized CPTAC3 ffce9077-7d86-4efb-ba14-964228618bcd 19172a0e83d59dd4991347b0ae61a676 {"aliquot_tag": "ALQ_a7366f9b", "gdc_sample_type": "Primary Tumor"} -C3N-02062.WGS.N C3N-02062 UCEC WGS blood_normal CPT0134600002 CPT0134600002.WholeGenome.RP-1303.bam 59085700359 BAM aligned CPTAC3 a21c36fd-7f91-4de9-87a1-44cb8327b198 d5d88cbce4bad583c87430113ca4f4b3 {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02062.WGS.N.hg38 C3N-02062 UCEC WGS blood_normal CPT0134600002 6897a033-cb98-4570-a39d-a8af68edbc71_wgs_gdc_realn.bam 84606898797 BAM harmonized CPTAC3 c76a1995-03d6-446f-a38a-1e77971bdf7d f4d2439af6c4d31d7903cfe1622fb1e8 {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02062.WGS.T C3N-02062 UCEC WGS tumor CPT0134500006 CPT0134500006.WholeGenome.RP-1303.bam 61155117727 BAM aligned CPTAC3 147556fc-3836-492c-b2a4-f1568030d4ac f73c10f2fa825c2e566d991c33083de7 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor"} -C3N-02062.WGS.T.hg38 C3N-02062 UCEC WGS tumor CPT0134500006 84904646-67d2-460c-8a61-fa1c5f3c6b25_wgs_gdc_realn.bam 88138507919 BAM harmonized CPTAC3 44d0feaf-38dc-41eb-9128-3143d86d270f 70dd98999ad7bf7cc6c0de9259496ed0 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor"} -C3N-02062.WXS.N C3N-02062 UCEC WXS blood_normal CPT0134600002 CPT0134600002.WholeExome.RP-1303.bam 27410997401 BAM aligned CPTAC3 f71340c4-8148-42c6-8e15-7ded491683ec 8c1b35f5b706b6b3fb7acc86639a0b6e {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02062.WXS.N.hg38 C3N-02062 UCEC WXS blood_normal CPT0134600002 6897a033-cb98-4570-a39d-a8af68edbc71_wxs_gdc_realn.bam 37356653112 BAM harmonized CPTAC3 d74ddc84-eac0-4d71-bba3-fae4cdb01049 8b86ba262eab051acac998ca9a125043 {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02062.WXS.T C3N-02062 UCEC WXS tumor CPT0134500006 CPT0134500006.WholeExome.RP-1303.bam 29356408797 BAM aligned CPTAC3 7649c86d-e35b-4af4-9619-f923f32916da 765720ac46a2c24528d95baf3d804aa6 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor"} -C3N-02062.WXS.T.hg38 C3N-02062 UCEC WXS tumor CPT0134500006 84904646-67d2-460c-8a61-fa1c5f3c6b25_wxs_gdc_realn.bam 40893500986 BAM harmonized CPTAC3 4f7a2ec0-6689-4707-9fd5-c73b12cbbe29 8788d9992225e77dc0af417b9a19f2d2 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor"} -C3N-02063.MethArray.Green.T C3N-02063 CCRCC Methylation_Array tumor CPT0134660009 203220070217_R01C01_Grn.idat 13676218 IDAT Green NA CPTAC3 32b879f9-8969-4821-8e6a-daa74f111f26 ff636b6dac02b60849f11337f2f998f3 {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor"} -C3N-02063.MethArray.Red.T C3N-02063 CCRCC Methylation_Array tumor CPT0134660009 203220070217_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 cbb7f277-6f79-4b27-9685-d7c156a4a190 b41a94ad6240b48ec5434e704505633c {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor"} -C3N-02063.miRNA-Seq.S44_L005_R1.T C3N-02063 CCRCC miRNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0176_AHYGLVBBXX_TATAAT_S44_L005_R1_001.unaln.bam 315506039 BAM S44_L005_R1 unaligned CPTAC3 454d9aec-e30a-4a5c-b383-87188a90fc95 9480a49d0d02eadd737bb68672c958d7 {"aliquot_tag": "ALQ_c506dbf6", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02063.miRNA-Seq.T.hg38 C3N-02063 CCRCC miRNA-Seq tumor CPT0134660006 aa4cc326-e3e2-4f20-a828-3ddbda711b5b_mirnaseq_gdc_realn.bam 341821843 BAM harmonized CPTAC3 80cffc8f-5b3c-4b2e-b302-65a1ae068209 44908e2494041107319a7d771a4568a5 {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor"} -C3N-02063.RNA-Seq.chimeric.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.chimeric.gdc_realn.bam 33795996 BAM chimeric harmonized CPTAC3 26f9a263-0ed1-445e-99df-e6ed29c85abc db3ab4d406da692f9215d9ab003b829b {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor"} -C3N-02063.RNA-Seq.genomic.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.genomic.gdc_realn.bam 7756371481 BAM genomic harmonized CPTAC3 32bfbf45-7e62-43a1-bc20-d0bc040b6bb7 5b54280125feead988df2bdac74e1645 {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor"} -C3N-02063.RNA-Seq.S24_L006_R1.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3595718305 FASTQ S24_L006_R1 unaligned CPTAC3 f1ae4d68-825f-4b31-bd89-8f128807a19b 359f95d04276e7ed8d8674c7a42e798e {"aliquot_tag": "ALQ_c506dbf6", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02063.RNA-Seq.S24_L006_R2.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3734528789 FASTQ S24_L006_R2 unaligned CPTAC3 622bc846-d713-469e-ad45-0c9c260f326a 6201d73b3f225dab0622a1c6a72e434a {"aliquot_tag": "ALQ_c506dbf6", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02063.RNA-Seq.transcriptome.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.transcriptome.gdc_realn.bam 9000648080 BAM transcriptome harmonized CPTAC3 b6243868-b729-4153-af4b-b8d7c8c87ead 4710e61a3c04bd09c2088781b8b2d32c {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor"} -C3N-02063.WGS.N C3N-02063 CCRCC WGS blood_normal CPT0134780002 CPT0134780002.WholeGenome.RP-1303.bam 59849497843 BAM aligned CPTAC3 2060bdad-4d06-444b-a567-c998651b2524 6fa44eb7e05a9875b1368a5ebeaaec74 {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02063.WGS.N.hg38 C3N-02063 CCRCC WGS blood_normal CPT0134780002 a3b6c6e3-bba9-4d7c-a614-67c80c0e2b04_wgs_gdc_realn.bam 86158367385 BAM harmonized CPTAC3 06d9ddce-c14d-470c-9fac-11081ff40e05 bb62f5333fc71783ac3a6a3d455d4d82 {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02063.WGS.T C3N-02063 CCRCC WGS tumor CPT0134660009 CPT0134660009.WholeGenome.RP-1303.bam 64493736731 BAM aligned CPTAC3 5137f70b-2111-48e9-b679-2011d55c54a0 9967bde81be1a22190d2ac289791f37c {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor"} -C3N-02063.WGS.T.hg38 C3N-02063 CCRCC WGS tumor CPT0134660009 2c36fd7e-7479-41e5-840f-d78ae22902b5_wgs_gdc_realn.bam 94603847775 BAM harmonized CPTAC3 393992e1-a70b-43e3-ae4d-4b5867723702 e7f2cad94788b0dcb180ec313c86a0c6 {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor"} -C3N-02063.WXS.N C3N-02063 CCRCC WXS blood_normal CPT0134780002 CPT0134780002.WholeExome.RP-1303.bam 22206028263 BAM aligned CPTAC3 1557e171-b0c5-4d99-9793-d74bf0d48a20 83fa179d31bf2ab5d363b35f7f26cefe {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02063.WXS.N.hg38 C3N-02063 CCRCC WXS blood_normal CPT0134780002 a3b6c6e3-bba9-4d7c-a614-67c80c0e2b04_wxs_gdc_realn.bam 31175755363 BAM harmonized CPTAC3 2bfb1d9d-a6e7-4bb2-961a-3f1e660b69e2 ad12c1df82c2cb6ebecba36f36bb3091 {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02063.WXS.T C3N-02063 CCRCC WXS tumor CPT0134660009 CPT0134660009.WholeExome.RP-1303.bam 26466001149 BAM aligned CPTAC3 657a2f1a-b6f8-4976-aeaa-5a5f33f8a5f8 a280ea97b54ffb9f67a2e6a53e03914b {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor"} -C3N-02063.WXS.T.hg38 C3N-02063 CCRCC WXS tumor CPT0134660009 2c36fd7e-7479-41e5-840f-d78ae22902b5_wxs_gdc_realn.bam 36373993823 BAM harmonized CPTAC3 2ab7899c-9b15-49c0-87e9-74bc09e2a1f5 e6a3e7918385b9c1a01a61d98851fd08 {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor"} -C3N-02066.MethArray.Green.A C3N-02066 CCRCC Methylation_Array tissue_normal CPT0109820006 204373100109_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 abc730ff-1b6d-4edf-9d70-ac1defc18489 ebf0c375868b8c7ffabe6b650e8833dd {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.MethArray.Green.T C3N-02066 CCRCC Methylation_Array tumor CPT0109800007 203219760081_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2dde2177-9e8b-46ad-86c1-9a663bf3af5e a63f0b49a7079c67f2d9076568e4de65 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor"} -C3N-02066.MethArray.Red.A C3N-02066 CCRCC Methylation_Array tissue_normal CPT0109820006 204373100109_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 e417a787-f611-4a32-9817-f1a5700fe3c0 df8bd8b2e1be9fbdc11f29ab348fd1a1 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.MethArray.Red.T C3N-02066 CCRCC Methylation_Array tumor CPT0109800007 203219760081_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 3a2f5db5-dfcf-45d6-8806-013a0d1028b2 636a5072851cfe3db7b198902c93b29c {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor"} -C3N-02066.miRNA-Seq.A.hg38 C3N-02066 CCRCC miRNA-Seq tissue_normal CPT0109820009 39eeaf7d-e667-4724-894f-62eb336643cf_mirnaseq_gdc_realn.bam 202289687 BAM harmonized CPTAC3 5daa3729-b81b-4201-97ae-c596b60af7c2 9c46d4652ba345efce88fc7ffd2f6d1c {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.miRNA-Seq.S2_L002_R1.A C3N-02066 CCRCC miRNA-Seq tissue_normal CPT0109820009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L002_R1_001.unaln.bam 184085575 BAM S2_L002_R1 unaligned CPTAC3 98c999d5-4161-4a67-b359-a5bc336f05d0 9b3c19f6bc83cc6b4efe04fc8bdcb20f {"aliquot_tag": "ALQ_756b67f4", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.miRNA-Seq.S7_L004_R1.T C3N-02066 CCRCC miRNA-Seq tumor CPT0109800010 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGATC_S7_L004_R1_001.unaln.bam 241275310 BAM S7_L004_R1 unaligned CPTAC3 d5cc6a00-a153-4e73-b5ad-e68b371c58fe 936fd2391f62e5718cbf1f3b9dc1e361 {"aliquot_tag": "ALQ_6f6cbd71", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02066.miRNA-Seq.T.hg38 C3N-02066 CCRCC miRNA-Seq tumor CPT0109800010 1cc7d171-3afa-4e0b-bda4-5dcc2a2e4d98_mirnaseq_gdc_realn.bam 269735036 BAM harmonized CPTAC3 ed6cf318-860a-4594-bc19-c6293b427e22 bbe3633722267b152dc54b3b46a0760b {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor"} -C3N-02066.RNA-Seq.chimeric.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.chimeric.gdc_realn.bam 398508975 BAM chimeric harmonized CPTAC3 614c51c9-0bec-494d-9dbc-614d3e12da2b fe1f21d1ece809123c28b13b0d017175 {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.RNA-Seq.chimeric.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.chimeric.gdc_realn.bam 106815192 BAM chimeric harmonized CPTAC3 0e58a688-536a-4e81-8c84-87ed678ecffd d2054923915f1036c4368b96bd93d21f {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor"} -C3N-02066.RNA-Seq.genomic.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.genomic.gdc_realn.bam 10160608975 BAM genomic harmonized CPTAC3 66e5a317-6078-4c0b-ab60-34adab28d825 319c70f0c91db924314cc490ed084b74 {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.RNA-Seq.genomic.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.genomic.gdc_realn.bam 9227660591 BAM genomic harmonized CPTAC3 12647113-0229-4fd1-920c-26a8160cff3c 60bb2fc3fc03e96322246a3b19e2e864 {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor"} -C3N-02066.RNA-Seq.S8_L002_R1.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4064161598 FASTQ S8_L002_R1 unaligned CPTAC3 c9b71185-f490-458c-98ad-18c122843bf3 1279c1267d2961ad51cbf9134cc4074a {"aliquot_tag": "ALQ_6f6cbd71", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02066.RNA-Seq.S8_L002_R2.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4503879871 FASTQ S8_L002_R2 unaligned CPTAC3 c2ebcef0-e7f2-44e9-918f-3d9840077bb5 fd453deb377cbab2da200a3aa32a4f77 {"aliquot_tag": "ALQ_6f6cbd71", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02066.RNA-Seq.S9_L003_R1.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R1_001.fastq.gz 4775006622 FASTQ S9_L003_R1 unaligned CPTAC3 8db98bdf-d737-4598-abfa-f5cdcd19be9b 2ffc9f64d580e144eba8fb32daef7855 {"aliquot_tag": "ALQ_756b67f4", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.RNA-Seq.S9_L003_R2.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R2_001.fastq.gz 4764232251 FASTQ S9_L003_R2 unaligned CPTAC3 2dec353f-c2ce-4d95-847d-1b9ebfcf5aeb 5ee5ee4ac9388370d201d7109940f905 {"aliquot_tag": "ALQ_756b67f4", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.RNA-Seq.transcriptome.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.transcriptome.gdc_realn.bam 11031612809 BAM transcriptome harmonized CPTAC3 41bf996b-0f7e-4aa3-bb21-e1d23cd821ce ea9425a363209c62c48d5c48b10a3f2b {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.RNA-Seq.transcriptome.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.transcriptome.gdc_realn.bam 10916545494 BAM transcriptome harmonized CPTAC3 efb343c7-9523-4463-b39a-a257b0a8b16d a44ef439c3d701f81f8294379d3797a2 {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor"} -C3N-02066.WGS.A C3N-02066 CCRCC WGS tissue_normal CPT0109820006 CPT0109820006.WholeGenome.RP-1303.bam 69597074763 BAM aligned CPTAC3 f0f8bacd-6081-44d7-aa16-8ed6aa57e4a4 98f388fef1aa076066cd449cd1a67ec2 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.WGS.A.hg38 C3N-02066 CCRCC WGS tissue_normal CPT0109820006 fb8b7ff5-89a3-4104-ba8c-ddc1ec7f4476_wgs_gdc_realn.bam 101804887550 BAM harmonized CPTAC3 da53f388-6e74-4f17-a68a-7b09de7c3d28 54da318024a1deb5db9b7e1cc435b184 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.WGS.N C3N-02066 CCRCC WGS blood_normal CPT0139350002 CPT0139350002.WholeGenome.RP-1303.bam 52326467938 BAM aligned CPTAC3 fb721a26-6d3e-41ac-aa74-45b71eb9bb52 ba3429187a3094091f19286d26520418 {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02066.WGS.N.hg38 C3N-02066 CCRCC WGS blood_normal CPT0139350002 283ad697-3688-4159-a0b7-8a12d6005948_wgs_gdc_realn.bam 77950068536 BAM harmonized CPTAC3 1a2d5cbf-5d6c-4cac-8a8c-57a040c7172e 9c5797b111818fde9b4e7ccecfb3f504 {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02066.WGS.T C3N-02066 CCRCC WGS tumor CPT0109800007 CPT0109800007.WholeGenome.RP-1303.bam 62198653665 BAM aligned CPTAC3 9505c7b3-b496-423e-b60f-bc0937493908 a5724a556a924b953408e8827dd71f49 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor"} -C3N-02066.WGS.T.hg38 C3N-02066 CCRCC WGS tumor CPT0109800007 10a9c495-e23e-4518-8e67-121fecde9e0c_wgs_gdc_realn.bam 91570025489 BAM harmonized CPTAC3 e9925d2b-6b0b-47fa-9ac1-e28c396b5642 002eb583d41c12a1a82ddfca6a7c3260 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor"} -C3N-02066.WXS.A C3N-02066 CCRCC WXS tissue_normal CPT0109820006 CPT0109820006.WholeExome.RP-1303.bam 27120357527 BAM aligned CPTAC3 a39e09ea-587c-4832-8386-d8403d04dc65 16a724754ed28bf8d3a38cd61ad3d57f {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.WXS.A.hg38 C3N-02066 CCRCC WXS tissue_normal CPT0109820006 fb8b7ff5-89a3-4104-ba8c-ddc1ec7f4476_wxs_gdc_realn.bam 37974421261 BAM harmonized CPTAC3 e18467f1-0748-4762-92cd-e3f57e3451d4 f2c3ae21e7cf2d910d434865b6d48938 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02066.WXS.N C3N-02066 CCRCC WXS blood_normal CPT0139350002 CPT0139350002.WholeExome.RP-1303.bam 26556995763 BAM aligned CPTAC3 7ec59cfa-16a6-4299-93ff-4c11605cc8af 03cbaf0aead8258cf80d6487b71cddde {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02066.WXS.N.hg38 C3N-02066 CCRCC WXS blood_normal CPT0139350002 283ad697-3688-4159-a0b7-8a12d6005948_wxs_gdc_realn.bam 36983883595 BAM harmonized CPTAC3 ea6d400f-2749-4388-b347-256d69e74e7e be3ad76a02ba07e28d970d12c7017fe8 {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02066.WXS.T C3N-02066 CCRCC WXS tumor CPT0109800007 CPT0109800007.WholeExome.RP-1303.bam 20793505876 BAM aligned CPTAC3 924a363c-5407-428d-b395-73e2a114bcfa 0341ce66dc9d56ec5ae7347bf7cbbfcf {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor"} -C3N-02066.WXS.T.hg38 C3N-02066 CCRCC WXS tumor CPT0109800007 10a9c495-e23e-4518-8e67-121fecde9e0c_wxs_gdc_realn.bam 29003761446 BAM harmonized CPTAC3 c782a79f-43aa-4b06-94cb-7e23f1cdaae6 97d770f3204f7c294a8ffc561b57dc22 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor"} -C3N-02067.MethArray.Green.A C3N-02067 LUAD Methylation_Array tissue_normal CPT0109850009 203219650004_R01C01_Grn.idat 13676222 IDAT Green NA CPTAC3 1971577f-5bb9-40e6-ba43-a494811cc30f 07151891aef91129c06fe267ffe3b489 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.MethArray.Green.T C3N-02067 LUAD Methylation_Array tumor CPT0109830010 203027390120_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9ec9139f-deca-40f9-865d-72699e8335bc 15802d7872dfff6ece4bd12a0fdd9631 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor"} -C3N-02067.MethArray.Red.A C3N-02067 LUAD Methylation_Array tissue_normal CPT0109850009 203219650004_R01C01_Red.idat 13676222 IDAT Red NA CPTAC3 b7b1b4fc-bb70-432d-86af-2c8f0e867438 c57fb3e13184bc9f90dda35f6ccaed96 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.MethArray.Red.T C3N-02067 LUAD Methylation_Array tumor CPT0109830010 203027390120_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 3f5a9a89-67d7-4cf7-a4ec-a66dc6a0aace 475bfbf16b0e3e9e56f1929792b3b72e {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor"} -C3N-02067.miRNA-Seq.A.hg38 C3N-02067 LUAD miRNA-Seq tissue_normal CPT0109850006 d366affc-225a-4b1c-acd8-c4177d3e88bc_mirnaseq_gdc_realn.bam 259661730 BAM harmonized CPTAC3 06a704f4-a1ef-44b5-bf20-1d5a4d35f54e a0d84853a9dbc3a5e9c52fb59f25e91e {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.miRNA-Seq.S1_L003_R1.A C3N-02067 LUAD miRNA-Seq tissue_normal CPT0109850006 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L003_R1_001.unaln.bam 232346541 BAM S1_L003_R1 unaligned CPTAC3 3c394a6f-6144-402b-b114-87255e69b988 8c87abf6f264a7e72b94c13b547facf0 {"aliquot_tag": "ALQ_57f4a675", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.miRNA-Seq.S30_L004_R1.T C3N-02067 LUAD miRNA-Seq tumor CPT0109830007 181108_UNC31-K00269_0162_AH255GBBXY_GCCAAT_S30_L004_R1_001.unaln.bam 250333414 BAM S30_L004_R1 unaligned CPTAC3 73833fd3-9c74-4ee7-b64b-893ad0e4aca8 731cda86d7d3b0b14530a136dbf4de2f {"aliquot_tag": "ALQ_afb36343", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02067.miRNA-Seq.T.hg38 C3N-02067 LUAD miRNA-Seq tumor CPT0109830007 2019c6e7-4147-4944-a9d3-ca14a56c4d9c_mirnaseq_gdc_realn.bam 275375693 BAM harmonized CPTAC3 abb9eb5a-08b1-4f38-b69f-df7f6d4e2a73 51610573744dd2931669ffc23473f7a8 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor"} -C3N-02067.RNA-Seq.chimeric.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.chimeric.gdc_realn.bam 141009444 BAM chimeric harmonized CPTAC3 c5e66c40-566d-4969-b9f0-5913c8c992d7 595b6d417b08c85fe95077e45dac6458 {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.RNA-Seq.chimeric.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.chimeric.gdc_realn.bam 67702069 BAM chimeric harmonized CPTAC3 079442fd-26ae-4e5f-93a8-7040b0b02ec2 5cf2d1bf0cc57d308750956bf02a5089 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor"} -C3N-02067.RNA-Seq.genomic.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.genomic.gdc_realn.bam 9151936038 BAM genomic harmonized CPTAC3 0ba78390-3251-4355-99b0-a5e7a638d65c 990fa8895b052ace8690ed38173a8074 {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.RNA-Seq.genomic.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.genomic.gdc_realn.bam 9768901405 BAM genomic harmonized CPTAC3 18ec7d5c-d6f7-4489-ac06-3ab941e96dc1 b3a9be3d785285e1a1a47a3fa5211ca7 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor"} -C3N-02067.RNA-Seq.S3_L007_R1.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R1_001.fastq.gz 4539108482 FASTQ S3_L007_R1 unaligned CPTAC3 96a4541d-fa4c-4bea-b0ed-a1c663dd3a35 a4f5f31dd2986875b30215f0f0199c69 {"aliquot_tag": "ALQ_afb36343", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02067.RNA-Seq.S3_L007_R2.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R2_001.fastq.gz 5032423844 FASTQ S3_L007_R2 unaligned CPTAC3 04bd9cf5-9ecd-4d35-83ae-50f29cbb564e 490c049446c3fc593a0e4d9eb5438a94 {"aliquot_tag": "ALQ_afb36343", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02067.RNA-Seq.S5_L002_R1.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R1_001.fastq.gz 4459595695 FASTQ S5_L002_R1 unaligned CPTAC3 6f623641-079d-4792-a52e-d6faa04c154d 8fab7106213123ee73555e10949385ff {"aliquot_tag": "ALQ_57f4a675", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.RNA-Seq.S5_L002_R2.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R2_001.fastq.gz 4463319322 FASTQ S5_L002_R2 unaligned CPTAC3 9cc2a034-a8c0-4c4f-986c-73222649734b bdbf0b8ee74ea61c67c8e293c2079f27 {"aliquot_tag": "ALQ_57f4a675", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.RNA-Seq.transcriptome.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.transcriptome.gdc_realn.bam 10711282067 BAM transcriptome harmonized CPTAC3 061953ad-a475-49d5-ad7d-8deba9191cb2 9dc73fca520438551e7eaac208bae308 {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.RNA-Seq.transcriptome.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.transcriptome.gdc_realn.bam 13240096392 BAM transcriptome harmonized CPTAC3 f6c5e45a-088b-4784-8f30-18242e923f3b 3858638c93dea3fc89756b8a4e078e95 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor"} -C3N-02067.WGS.A C3N-02067 LUAD WGS tissue_normal CPT0109850009 CPT0109850009.WholeGenome.RP-1303.bam 55482049007 BAM aligned CPTAC3 bf2b7e38-270b-4e0f-9ef5-147dc21d581b 70d9d6b73cad75ec8903ae1adde5cff5 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.WGS.A.hg38 C3N-02067 LUAD WGS tissue_normal CPT0109850009 fe44b42b-a442-442a-8306-17cb7c09becd_wgs_gdc_realn.bam 81060305027 BAM harmonized CPTAC3 765292a9-dbfe-4b64-8786-0d1d2c0780c6 53b213b2fcc70d71c59c1e2ff1b83259 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.WGS.N C3N-02067 LUAD WGS blood_normal CPT0139390002 CPT0139390002.WholeGenome.RP-1303.bam 53639498170 BAM aligned CPTAC3 b0eed8df-d140-45ba-8b71-f789b12a4ec7 56f84050b5cacf78901fdbbf13c17d35 {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02067.WGS.N.hg38 C3N-02067 LUAD WGS blood_normal CPT0139390002 f2a460fb-b9c4-4416-8eba-43f2262d9f69_wgs_gdc_realn.bam 77729417894 BAM harmonized CPTAC3 48a82c5e-f542-4065-9c59-0867897199dd 311e46650f5d2fd4fe0e0e15521b13a9 {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02067.WGS.T C3N-02067 LUAD WGS tumor CPT0109830010 CPT0109830010.WholeGenome.RP-1303.bam 57016240584 BAM aligned CPTAC3 2e937a78-b36d-46c3-a5f2-935170780ffe bff79c4a2fea63a154e112fd452af8c2 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor"} -C3N-02067.WGS.T.hg38 C3N-02067 LUAD WGS tumor CPT0109830010 93c2237d-c12e-435c-a1b0-97f6c59cccff_wgs_gdc_realn.bam 83631016035 BAM harmonized CPTAC3 f05ded8e-b053-4f0e-a4e3-51cbf2b4288f c37b6f3a049677b28cf84884833612a6 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor"} -C3N-02067.WXS.A C3N-02067 LUAD WXS tissue_normal CPT0109850009 CPT0109850009.WholeExome.RP-1303.bam 35454988645 BAM aligned CPTAC3 b7a59366-55df-4ecf-9dde-da54b6dbea9b 56548f94e0f2068b55278b17df14e893 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.WXS.A.hg38 C3N-02067 LUAD WXS tissue_normal CPT0109850009 fe44b42b-a442-442a-8306-17cb7c09becd_wxs_gdc_realn.bam 47376603238 BAM harmonized CPTAC3 c0bbd01b-1223-463d-a3cf-ded71121573f a3e588dcc6cb2e66137d33edd2692406 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02067.WXS.N C3N-02067 LUAD WXS blood_normal CPT0139390002 CPT0139390002.WholeExome.RP-1303.bam 25010709644 BAM aligned CPTAC3 b08beb3e-1bdc-4800-9dc8-32e7896b1f21 9f6526ab506c2b998d44bca9e7bdefb4 {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02067.WXS.N.hg38 C3N-02067 LUAD WXS blood_normal CPT0139390002 f2a460fb-b9c4-4416-8eba-43f2262d9f69_wxs_gdc_realn.bam 33987543561 BAM harmonized CPTAC3 7b87637e-52bf-4ded-82a1-9c511c954953 7e58cafa46175f1fd50895589276a15f {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02067.WXS.T C3N-02067 LUAD WXS tumor CPT0109830010 CPT0109830010.WholeExome.RP-1303.bam 33218172131 BAM aligned CPTAC3 1cd98d9c-22d4-42fd-9a6d-08969a07ba8a 5b8db0e301f1e941dc1058c0a30411cf {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor"} -C3N-02067.WXS.T.hg38 C3N-02067 LUAD WXS tumor CPT0109830010 93c2237d-c12e-435c-a1b0-97f6c59cccff_wxs_gdc_realn.bam 45467255428 BAM harmonized CPTAC3 63f87f84-4e24-44b4-9cf8-91a9fe5e3910 01988a7d4c78c6eec1bfc18b0ed033a8 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor"} -C3N-02068.MethArray.Green.T C3N-02068 CCRCC Methylation_Array tumor CPT0109860007 203219670122_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 27c9aaa0-2425-4a8d-9270-bb0f57f8b1f0 bbb0c3ebbde51ea6d141511ecd933243 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor"} -C3N-02068.MethArray.Red.T C3N-02068 CCRCC Methylation_Array tumor CPT0109860007 203219670122_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 cec573a6-b14e-49b1-8ead-3edd32f8cea9 5ae81cc182c0c8fce661670e4160da92 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor"} -C3N-02068.miRNA-Seq.S8_L004_R1.T C3N-02068 CCRCC miRNA-Seq tumor CPT0109860010 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTTGA_S8_L004_R1_001.unaln.bam 201640648 BAM S8_L004_R1 unaligned CPTAC3 fdafbe3f-1c0a-4a35-8b9e-68644e97db31 7a475b2ee17f014c435422bf2debecf5 {"aliquot_tag": "ALQ_e02c48d1", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02068.miRNA-Seq.T.hg38 C3N-02068 CCRCC miRNA-Seq tumor CPT0109860010 897b7147-b998-43c3-b20c-88852d808988_mirnaseq_gdc_realn.bam 225695151 BAM harmonized CPTAC3 2ba43caf-5a90-42a9-8ec6-906bb3124ca7 a667373fce8c70c6e9cd260f9c5e3280 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor"} -C3N-02068.RNA-Seq.chimeric.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.chimeric.gdc_realn.bam 101534025 BAM chimeric harmonized CPTAC3 4bdffe4e-27ba-4599-af79-17dd52d19f85 a1d9afef293398fa750a28cfbb34a4f3 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor"} -C3N-02068.RNA-Seq.genomic.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.genomic.gdc_realn.bam 8031259244 BAM genomic harmonized CPTAC3 b938a386-fcde-436b-b559-d2f336393d23 9efe480673b12abe47ee41adf7cc6645 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor"} -C3N-02068.RNA-Seq.S7_L002_R1.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3611242902 FASTQ S7_L002_R1 unaligned CPTAC3 2a93bde3-82b9-4ea3-8e24-26d896e2e5d7 03da32bba9e01c1e91105cd0cea05ccd {"aliquot_tag": "ALQ_e02c48d1", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02068.RNA-Seq.S7_L002_R2.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3938541574 FASTQ S7_L002_R2 unaligned CPTAC3 f313414c-ca3c-4d29-9bc1-e962ea516a3f b50d8551955c22e851fe77ed73de9923 {"aliquot_tag": "ALQ_e02c48d1", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02068.RNA-Seq.transcriptome.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.transcriptome.gdc_realn.bam 10015042958 BAM transcriptome harmonized CPTAC3 9754ba56-fa26-44f1-8dc7-351f24e2db8b 91c997d86ebbf8445ccc3eda242534e3 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor"} -C3N-02068.WGS.N C3N-02068 CCRCC WGS blood_normal CPT0139430002 CPT0139430002.WholeGenome.RP-1303.bam 62216048242 BAM aligned CPTAC3 1b184e8c-6791-4306-a874-0151a9fffe7a 10098345073a2d0251ca43a8e11c26f8 {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02068.WGS.N.hg38 C3N-02068 CCRCC WGS blood_normal CPT0139430002 b4cccd0f-cb56-44fb-aa9f-e709ad21eebe_wgs_gdc_realn.bam 94723892634 BAM harmonized CPTAC3 4874805b-653c-41d3-9fc6-a666f66e8bfa b495ec37582d0b341b06ddebda9b840a {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02068.WGS.T C3N-02068 CCRCC WGS tumor CPT0109860007 CPT0109860007.WholeGenome.RP-1303.bam 56500497106 BAM aligned CPTAC3 b27086db-1d87-4bc6-9802-e56825109692 23e7f7378ee40d8434ef143ae6c5b715 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor"} -C3N-02068.WGS.T.hg38 C3N-02068 CCRCC WGS tumor CPT0109860007 b14374d2-a1ca-45a8-81db-d87747b98b56_wgs_gdc_realn.bam 84698272861 BAM harmonized CPTAC3 dab08691-5deb-4af6-8ef5-d5f114fb7d2e 36cae6df8db54131b2e717b7ecc1d630 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor"} -C3N-02068.WXS.N C3N-02068 CCRCC WXS blood_normal CPT0139430002 CPT0139430002.WholeExome.RP-1303.bam 28597796317 BAM aligned CPTAC3 f38de623-61ac-4e01-a840-44f044b3f13a ec5415b11e567f4077775d8d9b65514e {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02068.WXS.N.hg38 C3N-02068 CCRCC WXS blood_normal CPT0139430002 b4cccd0f-cb56-44fb-aa9f-e709ad21eebe_wxs_gdc_realn.bam 39746493661 BAM harmonized CPTAC3 d85c7679-6777-4f85-8f58-68c53c17a5f4 f37fe9060c5fd327d7937e8a0968b740 {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02068.WXS.T C3N-02068 CCRCC WXS tumor CPT0109860007 CPT0109860007.WholeExome.RP-1303.bam 25857230908 BAM aligned CPTAC3 6b5ce872-9b12-4b11-9564-ac12d7ec6a55 e3d4de0d46d277a9c1e54b65e49e321d {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor"} -C3N-02068.WXS.T.hg38 C3N-02068 CCRCC WXS tumor CPT0109860007 b14374d2-a1ca-45a8-81db-d87747b98b56_wxs_gdc_realn.bam 35673134829 BAM harmonized CPTAC3 a00391d6-22bb-4fe3-97cb-1853df74b673 0b89bbd1977212474ef97a6e0b8f6bd9 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor"} -C3N-02069.MethArray.Green.T C3N-02069 PDA Methylation_Array tumor CPT0146130010 203219670118_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e838a2cb-8d2c-44f7-b385-42a896854d4a e1fd96f8f7ce8036fae64d49c26b9c73 {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor"} -C3N-02069.MethArray.Red.T C3N-02069 PDA Methylation_Array tumor CPT0146130010 203219670118_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5e7284d-f3db-4971-a6b2-2eef76ca8ff8 9c1bbdea590c2a70ecd6022f35104ab2 {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor"} -C3N-02069.miRNA-Seq.S10_L001_R1.T C3N-02069 PDA miRNA-Seq tumor CPT0146130007 181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L001_R1_001.unaln.bam 296336053 BAM S10_L001_R1 unaligned CPTAC3 9f4d5c3f-d5c3-4fd1-a450-1168fd87a70a 27414af3d5c991efeaeea7d16336e085 {"aliquot_tag": "ALQ_fabe4c98", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02069.miRNA-Seq.T.hg38 C3N-02069 PDA miRNA-Seq tumor CPT0146130007 7bfbb1fd-7e13-4907-93df-0211fe3afe4e_mirnaseq_gdc_realn.bam 322942729 BAM harmonized CPTAC3 fae904e6-8eed-439f-a142-c15b6eb478f8 0c35003e2146284b35e2a8efcb2742b3 {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor"} -C3N-02069.RNA-Seq.chimeric.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.chimeric.gdc_realn.bam 130572828 BAM chimeric harmonized CPTAC3 d05080e7-c8f9-4d89-8c84-375779d74fe6 00bc33b03b57ff48b3aa7b09093e71ae {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor"} -C3N-02069.RNA-Seq.genomic.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.genomic.gdc_realn.bam 10026920928 BAM genomic harmonized CPTAC3 383ea4ad-aa00-4e13-bc8b-c88cdba29942 7f6c728c76eae9f644639e00dfbc0c4d {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor"} -C3N-02069.RNA-Seq.S2_L006_R1.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4475908435 FASTQ S2_L006_R1 unaligned CPTAC3 a2b0c3e8-eb52-44b4-ae01-f1ca77ec00cd f85f5b522b10e5655422a9d55fda8603 {"aliquot_tag": "ALQ_fabe4c98", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02069.RNA-Seq.S2_L006_R2.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4983526900 FASTQ S2_L006_R2 unaligned CPTAC3 f502ecbb-c10e-40d0-b944-d5453bf7e1b1 96ccff3f63d32720c3576269e62161a3 {"aliquot_tag": "ALQ_fabe4c98", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02069.RNA-Seq.transcriptome.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.transcriptome.gdc_realn.bam 13309904214 BAM transcriptome harmonized CPTAC3 b791f00e-dffc-48c8-86fa-d546993dca10 f21c3deb7a26e73d015dba97e5418ede {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WGS.N C3N-02069 PDA WGS blood_normal CPT0146150002 CPT0146150002.WholeGenome.RP-1303.bam 66487699939 BAM aligned CPTAC3 47d581f3-4bd7-4dc7-aadb-4ae095c8e5c5 afae6a98fb1c6552f46908b4574ba9b5 {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02069.WGS.N.hg38 C3N-02069 PDA WGS blood_normal CPT0146150002 a3341e64-192b-4ef2-b376-567aa5862025_wgs_gdc_realn.bam 97193991291 BAM harmonized CPTAC3 9c27493b-fef7-4c07-9a95-0fc68d75604c b301979f86035e083aa3cc3130b7d4d7 {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02069.WGS.T C3N-02069 PDA WGS tumor CPT0146130010_1 CPT0146130010_1.WholeGenome.RP-1303.bam 121225310601 BAM aligned CPTAC3 57f50f88-4241-4217-8b15-4c6ad3038fd0 c71ad262118515f7f24abc2f5f41094d {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WGS.T C3N-02069 PDA WGS tumor CPT0146130010 CPT0146130010.WholeGenome.RP-1303.bam 72004045661 BAM aligned CPTAC3 bfe79cd5-6ae6-4153-b470-296d24fd5f8d c01d4c67b29eed1e9be30dbeef71e37c {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WGS.T.hg38 C3N-02069 PDA WGS tumor CPT0146130010_1 a7720d75-cf5b-4d5a-8e2d-99dcbd125845_wgs_gdc_realn.bam 175939539225 BAM harmonized CPTAC3 fc6596b2-026f-4d30-b1f9-a2879480be23 eeee24dbb4a4d825488372264b6f7952 {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WGS.T.hg38 C3N-02069 PDA WGS tumor CPT0146130010 d68541ce-05ea-4c5e-aa19-a284aeb12410_wgs_gdc_realn.bam 105507520033 BAM harmonized CPTAC3 d6796c2f-44e7-4b04-9019-1143faabbac5 fbe567efb5f68971b1b4592723bec1c2 {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WXS.N C3N-02069 PDA WXS blood_normal CPT0146150002 CPT0146150002.WholeExome.RP-1303.bam 24494509627 BAM aligned CPTAC3 62efe7e8-9e20-4ff5-85b3-f5b2a9e37de3 86b518302f60d00d1fd67c1a3d0eb84c {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02069.WXS.N.hg38 C3N-02069 PDA WXS blood_normal CPT0146150002 a3341e64-192b-4ef2-b376-567aa5862025_wxs_gdc_realn.bam 33431995543 BAM harmonized CPTAC3 18842255-d0ef-4ecf-903b-33c1a1d26808 a410c71f904bdca35ebfe07c06197f83 {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02069.WXS.T C3N-02069 PDA WXS tumor CPT0146130010_1 CPT0146130010_1.WholeExome.RP-1303.bam 50817531108 BAM aligned CPTAC3 63c7ff8b-b2d0-412f-827d-ac9778507c25 eb4e085e67a0613d8fd87d5dcd876a3b {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WXS.T C3N-02069 PDA WXS tumor CPT0146130010 CPT0146130010.WholeExome.RP-1303.bam 22775645034 BAM aligned CPTAC3 50d8adbd-0831-44a0-b3e9-3ffb2275ba04 81a96bb8972352ef2522026a85f9e87f {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WXS.T.hg38 C3N-02069 PDA WXS tumor CPT0146130010_1 a7720d75-cf5b-4d5a-8e2d-99dcbd125845_wxs_gdc_realn.bam 69692472390 BAM harmonized CPTAC3 e3e92639-3b7d-4bbc-bc45-c25331e9d386 8e5708465d7421676dd89caa62c12455 {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor"} -C3N-02069.WXS.T.hg38 C3N-02069 PDA WXS tumor CPT0146130010 d68541ce-05ea-4c5e-aa19-a284aeb12410_wxs_gdc_realn.bam 31370633080 BAM harmonized CPTAC3 66df412d-080f-4f39-a41d-6f2bbcb3abe5 7e2f686d8724ef9ae458332b32d1aa3f {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor"} -C3N-02070.MethArray.Green.A C3N-02070 CCRCC Methylation_Array tissue_normal CPT0109910006 204930630034_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a701de63-827f-489e-97bf-c3cb34e33b15 193b464436b30cc427b5306d6c1b0647 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.MethArray.Green.T C3N-02070 CCRCC Methylation_Array tumor CPT0109890007 203219650202_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a308613e-999c-4f6d-ab54-2d2576335e79 708d28c699c4321af94cc2aa3fb4f1ef {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor"} -C3N-02070.MethArray.Red.A C3N-02070 CCRCC Methylation_Array tissue_normal CPT0109910006 204930630034_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 1ee7c82f-bd6c-4e3b-bc1e-31698963fef5 c5005d8682f13494e167eef004d8e3f7 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.MethArray.Red.T C3N-02070 CCRCC Methylation_Array tumor CPT0109890007 203219650202_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 da3ef3e9-5521-4397-ad00-28359910995a be6bde36e795224599844c012a7806a7 {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor"} -C3N-02070.miRNA-Seq.A.hg38 C3N-02070 CCRCC miRNA-Seq tissue_normal CPT0109910009 5392ec85-37e4-48ab-b059-a221d1b01d13_mirnaseq_gdc_realn.bam 221284144 BAM harmonized CPTAC3 55c858e1-be93-4660-9635-c73e13ca0de7 4668d7e3efae3b979da94241580b0e46 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.miRNA-Seq.S3_L002_R1.A C3N-02070 CCRCC miRNA-Seq tissue_normal CPT0109910009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L002_R1_001.unaln.bam 203409875 BAM S3_L002_R1 unaligned CPTAC3 7503d61e-ea30-4f01-a78a-3c49e736d3f9 d499cbf60994bcfbaa837bfa29ae9e27 {"aliquot_tag": "ALQ_f997ce81", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.miRNA-Seq.S9_L004_R1.T C3N-02070 CCRCC miRNA-Seq tumor CPT0109890010 190108_UNC31-K00269_0176_AHYGLVBBXX_GATCAG_S9_L004_R1_001.unaln.bam 201795964 BAM S9_L004_R1 unaligned CPTAC3 ae99b986-0e1e-4104-8b39-6613a10aa123 70e53b145259484caa0cd2be678cd949 {"aliquot_tag": "ALQ_627cdf00", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02070.miRNA-Seq.T.hg38 C3N-02070 CCRCC miRNA-Seq tumor CPT0109890010 a3cb9f78-d40e-44ef-b40f-e6ab7beae54d_mirnaseq_gdc_realn.bam 222619495 BAM harmonized CPTAC3 55889853-aafe-4e99-8f31-25d9ccc9e89a 5dd9a2b8cedfd45642af7d681092b5a5 {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor"} -C3N-02070.RNA-Seq.chimeric.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.chimeric.gdc_realn.bam 193006535 BAM chimeric harmonized CPTAC3 4c01da73-d726-449b-bcad-f555d0a4ab21 eafd39882fd9ad36e3dd1c7a207a80a4 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.RNA-Seq.chimeric.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.chimeric.gdc_realn.bam 179757564 BAM chimeric harmonized CPTAC3 1c88da81-84df-4671-ba0b-e442149ca34f d4edc315bf584fa94bb1b3cdfbf7939e {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor"} -C3N-02070.RNA-Seq.genomic.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.genomic.gdc_realn.bam 8958277545 BAM genomic harmonized CPTAC3 6f282acc-e3ea-4831-ac36-ae7534799b96 6493ed69874eb4faa3242b99cd768314 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.RNA-Seq.genomic.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.genomic.gdc_realn.bam 7635931069 BAM genomic harmonized CPTAC3 0b886fed-16d8-49b7-a2d6-9e9481b184e4 6d570e4d769cd6bc87e2fffd4a3a0a6b {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor"} -C3N-02070.RNA-Seq.S11_L003_R1.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3993461279 FASTQ S11_L003_R1 unaligned CPTAC3 c2a45e67-a032-4e26-80ba-ccb8e726bd85 5b83ee14848f72f547ccd20665077054 {"aliquot_tag": "ALQ_f997ce81", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.RNA-Seq.S11_L003_R2.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4284843965 FASTQ S11_L003_R2 unaligned CPTAC3 f225ce40-ab64-4fd0-84b4-a723598426fb c2ec94adb5b587d2f8cbbf6c379bab0c {"aliquot_tag": "ALQ_f997ce81", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.RNA-Seq.S3_L001_R1.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3429739960 FASTQ S3_L001_R1 unaligned CPTAC3 ba480a0e-f178-499d-b6c4-bb416664dedf 4a76a576fb52f4e1cb176a02782731bd {"aliquot_tag": "ALQ_627cdf00", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02070.RNA-Seq.S3_L001_R2.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3936538065 FASTQ S3_L001_R2 unaligned CPTAC3 cb664dbd-e3ff-480d-9c73-8ae4086789ce e012aaa1e1dbfb0ab848ccb2ec599b39 {"aliquot_tag": "ALQ_627cdf00", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02070.RNA-Seq.transcriptome.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.transcriptome.gdc_realn.bam 9590772808 BAM transcriptome harmonized CPTAC3 2a4f57af-cf90-4907-87e6-f27cb2317170 ab3833140c0e040a899e8133f9072170 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.RNA-Seq.transcriptome.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.transcriptome.gdc_realn.bam 9331404926 BAM transcriptome harmonized CPTAC3 87fe8ab9-14ad-4161-a956-0a598de18f16 238f350f0deddc8ce695eada815672cf {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor"} -C3N-02070.WGS.A C3N-02070 CCRCC WGS tissue_normal CPT0109910006 CPT0109910006.WholeGenome.RP-1303.bam 67858578812 BAM aligned CPTAC3 db0348c9-48c6-4abe-9f76-11d5e2e01d4a 9445362e54d43164cc35230ae497d3a3 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.WGS.A.hg38 C3N-02070 CCRCC WGS tissue_normal CPT0109910006 dc2ed23b-fb44-4015-9e67-8d77da23efbf_wgs_gdc_realn.bam 100395086788 BAM harmonized CPTAC3 4e67166c-6242-4142-82c9-ef16af4f9e23 865aa5edcaae8cb812e79497b0fb9eb6 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.WGS.N C3N-02070 CCRCC WGS blood_normal CPT0146220002 CPT0146220002.WholeGenome.RP-1303.bam 58917489490 BAM aligned CPTAC3 1e786228-e432-4198-b49e-67b926343d0c c00b54d0cd031adef049338deab9c791 {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal"} -C3N-02070.WGS.N.hg38 C3N-02070 CCRCC WGS blood_normal CPT0146220002 123e488b-2d6f-4660-9ec1-1f9d5d6de82b_wgs_gdc_realn.bam 86649092302 BAM harmonized CPTAC3 d5cb1382-76b4-4e8f-89bf-3ff7ec3d693f 4b0cd7412df6f4f2c3a52d82794fdd12 {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal"} -C3N-02070.WGS.T C3N-02070 CCRCC WGS tumor CPT0109890007 CPT0109890007.WholeGenome.RP-1303.bam 68660018220 BAM aligned CPTAC3 6d5e15cd-8fe9-451d-b805-5d60249e217f 6e9c7559ff208426bee13824a4f35fdd {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor"} -C3N-02070.WGS.T.hg38 C3N-02070 CCRCC WGS tumor CPT0109890007 16d98f7c-5f39-45b4-b6b5-9d719e406c8c_wgs_gdc_realn.bam 99230298171 BAM harmonized CPTAC3 f5f7002b-9cb8-46dc-adaa-0ffd9ab9d595 d632c7399c053ac4bad1334a318d8551 {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor"} -C3N-02070.WXS.A C3N-02070 CCRCC WXS tissue_normal CPT0109910006 CPT0109910006.WholeExome.RP-1303.bam 21425511765 BAM aligned CPTAC3 d97bda3d-02b6-4f9c-aa24-43f2ae178b68 af6082d442b06ed02ade88ae6e910910 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.WXS.A.hg38 C3N-02070 CCRCC WXS tissue_normal CPT0109910006 dc2ed23b-fb44-4015-9e67-8d77da23efbf_wxs_gdc_realn.bam 30480488036 BAM harmonized CPTAC3 a26fe05f-e518-4865-878a-780905366f2e 0dfd5de9a6980343abeee9b5c9dba15c {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02070.WXS.N C3N-02070 CCRCC WXS blood_normal CPT0146220002 CPT0146220002.WholeExome.RP-1303.bam 25600672747 BAM aligned CPTAC3 145b2a1e-086a-41da-a319-371b82e18e13 eb1ea34538a970d45ab9c8f212d3e1bf {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal"} -C3N-02070.WXS.N.hg38 C3N-02070 CCRCC WXS blood_normal CPT0146220002 123e488b-2d6f-4660-9ec1-1f9d5d6de82b_wxs_gdc_realn.bam 35667365530 BAM harmonized CPTAC3 67d0597f-adbe-47a8-8999-1ef6c6333976 1827d5c8e41c649b4dbeac4b4bd0f3b0 {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal"} -C3N-02070.WXS.T C3N-02070 CCRCC WXS tumor CPT0109890007 CPT0109890007.WholeExome.RP-1303.bam 19428254334 BAM aligned CPTAC3 2c415c32-7bb2-4c64-9d9f-66b4acc884fc 82eb2be5de8c236ef7f343d4ed29911c {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor"} -C3N-02070.WXS.T.hg38 C3N-02070 CCRCC WXS tumor CPT0109890007 16d98f7c-5f39-45b4-b6b5-9d719e406c8c_wxs_gdc_realn.bam 26763509742 BAM harmonized CPTAC3 d3951eb4-d8fc-4454-996e-393fa8e92ba6 d133ae77558d33c9cbc0a5f3478c492f {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor"} -C3N-02082.MethArray.Green.A C3N-02082 CCRCC Methylation_Array tissue_normal CPT0109940006 204373100108_R08C01_Grn.idat 13677950 IDAT Green NA CPTAC3 3c945842-38e2-457f-8733-d508202e450e ae55853f65bc296446c3e45691c219f0 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.MethArray.Green.T C3N-02082 CCRCC Methylation_Array tumor CPT0109920007 203219670141_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 aec99e7f-ebcd-42f5-b582-0bff51fec738 234348e0d2d2198ed68289386536145c {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor"} -C3N-02082.MethArray.Red.A C3N-02082 CCRCC Methylation_Array tissue_normal CPT0109940006 204373100108_R08C01_Red.idat 13677950 IDAT Red NA CPTAC3 d7547896-fa44-4552-a82a-46cfb727099e e8859b070e80b304e7f56cdbe6595424 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.MethArray.Red.T C3N-02082 CCRCC Methylation_Array tumor CPT0109920007 203219670141_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 36f8908a-0e5e-40cd-81d9-51ebb23c767a a8ce091f1588d476d9d265af18034dc4 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor"} -C3N-02082.miRNA-Seq.A.hg38 C3N-02082 CCRCC miRNA-Seq tissue_normal CPT0109940009 cad16176-512d-4ff2-ac70-2068519e7623_mirnaseq_gdc_realn.bam 287218308 BAM harmonized CPTAC3 0451e369-a8a6-4cbb-a5b5-22e163a57dc1 571a4352bc562cd03eedbb6bb534b0ef {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.miRNA-Seq.S10_L004_R1.T C3N-02082 CCRCC miRNA-Seq tumor CPT0109920010 190108_UNC31-K00269_0176_AHYGLVBBXX_TAGCTT_S10_L004_R1_001.unaln.bam 220316365 BAM S10_L004_R1 unaligned CPTAC3 d4b3bba8-a429-4c6b-851b-1d775f94d0f3 319fdd1c7d53558af585d6aa5b144daa {"aliquot_tag": "ALQ_def03db4", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02082.miRNA-Seq.S11_L002_R1.A C3N-02082 CCRCC miRNA-Seq tissue_normal CPT0109940009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L002_R1_001.unaln.bam 266676227 BAM S11_L002_R1 unaligned CPTAC3 bcecd69b-4989-4bbe-8085-038335ca6f4c a6e90ad1874a50a3428a5691c065721d {"aliquot_tag": "ALQ_317741f1", "sample": "S11", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.miRNA-Seq.T.hg38 C3N-02082 CCRCC miRNA-Seq tumor CPT0109920010 533b0c00-69e3-44ad-8068-c74bff080b21_mirnaseq_gdc_realn.bam 244682352 BAM harmonized CPTAC3 1caa50c8-3a27-4619-b4b5-9ccf69c0c6a1 37bc809b8b56e8ae9f75d6873e372881 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor"} -C3N-02082.RNA-Seq.chimeric.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.chimeric.gdc_realn.bam 185433322 BAM chimeric harmonized CPTAC3 9e370460-c250-4d11-ae8c-59850153a5c1 5f45bba4f1ddbc8f214e0e7a70f5cd12 {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.RNA-Seq.chimeric.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.chimeric.gdc_realn.bam 199037957 BAM chimeric harmonized CPTAC3 a1e9954e-be6b-4b86-bbd2-2d08c9bd2130 4c17a260b7dd337a8af0a3bf8fd9e278 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor"} -C3N-02082.RNA-Seq.genomic.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.genomic.gdc_realn.bam 10438661761 BAM genomic harmonized CPTAC3 1ea99483-1fdb-4fbc-b692-a314162505c9 ffff6c4a55a8d59792a97fb40b9cd6bf {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.RNA-Seq.genomic.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.genomic.gdc_realn.bam 8543050840 BAM genomic harmonized CPTAC3 01026c57-206d-49c7-9864-b5b588a09ca2 c8c01f606185187f936c0e1575efe1b3 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor"} -C3N-02082.RNA-Seq.S2_L001_R1.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3654677904 FASTQ S2_L001_R1 unaligned CPTAC3 705ed781-5a2a-4c96-b505-b240ea717e62 c03b81a40ecaeb4ab3d4d8d8b86f7b49 {"aliquot_tag": "ALQ_def03db4", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02082.RNA-Seq.S2_L001_R2.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4154102334 FASTQ S2_L001_R2 unaligned CPTAC3 ef3f6457-1a5d-4b4d-b0dd-56224d5812e7 1a9344d6aacbe6eb2f814d1e6b7c948b {"aliquot_tag": "ALQ_def03db4", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02082.RNA-Seq.S2_L005_R1.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R1_001.fastq.gz 4855832251 FASTQ S2_L005_R1 unaligned CPTAC3 be698259-9bae-4d74-b999-c429333679a3 91c19e93af5ee11340d58a011009cf20 {"aliquot_tag": "ALQ_317741f1", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.RNA-Seq.S2_L005_R2.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R2_001.fastq.gz 5461139177 FASTQ S2_L005_R2 unaligned CPTAC3 7ce94448-d41c-44eb-bc85-e5539ce59d24 7e23ed39c3fd17a1b8c19c160b1a9d90 {"aliquot_tag": "ALQ_317741f1", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.RNA-Seq.transcriptome.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.transcriptome.gdc_realn.bam 12532876205 BAM transcriptome harmonized CPTAC3 329921d6-3546-4174-b66f-4ace57fdb206 7cc47dcc3aa170124d00e40acbc032eb {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.RNA-Seq.transcriptome.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.transcriptome.gdc_realn.bam 10225432167 BAM transcriptome harmonized CPTAC3 49506eb3-9885-459b-b854-50a8d968a169 d35cf47b4bfb0d8893d75155da830c61 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor"} -C3N-02082.WGS.A C3N-02082 CCRCC WGS tissue_normal CPT0109940006 CPT0109940006.WholeGenome.RP-1303.bam 62883739252 BAM aligned CPTAC3 6e70a4c8-3d4e-4ccc-819a-389d8df4f56b 6021e36db1300387547d5dd989e14872 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.WGS.A.hg38 C3N-02082 CCRCC WGS tissue_normal CPT0109940006 8e48b378-88aa-48f5-a10f-06b77a827e48_wgs_gdc_realn.bam 91508757986 BAM harmonized CPTAC3 7c799536-8976-4302-94a2-211916be4dfd 71ca343e3d6699428239bae5ec7fe811 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.WGS.N C3N-02082 CCRCC WGS blood_normal CPT0146260002 CPT0146260002.WholeGenome.RP-1303.bam 55733994847 BAM aligned CPTAC3 7843627f-a7c6-4e4e-927a-6ca4838e471b 87b7e2aebe54baf5b226b0bd52c22602 {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02082.WGS.N.hg38 C3N-02082 CCRCC WGS blood_normal CPT0146260002 8a383b2d-4851-4a69-b2f1-437b2d2f1012_wgs_gdc_realn.bam 81207194202 BAM harmonized CPTAC3 3117feae-c406-40b2-8f25-e27bbda8edd6 9f4fad397b333dbe999fe08a25b8b354 {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02082.WGS.T C3N-02082 CCRCC WGS tumor CPT0109920007 CPT0109920007.WholeGenome.RP-1303.bam 56521905101 BAM aligned CPTAC3 f501bcff-3db0-4c4e-9550-462f9db07592 f2da8e95c3ec3b38b774a82df7650734 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor"} -C3N-02082.WGS.T.hg38 C3N-02082 CCRCC WGS tumor CPT0109920007 3d1fdc85-55b2-4761-a1c5-4626d8281bad_wgs_gdc_realn.bam 82875276240 BAM harmonized CPTAC3 64ee9d1a-863b-4b20-b068-6fb32479f036 44ddf0e09e7e7a2960436e2844a9011c {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor"} -C3N-02082.WXS.A C3N-02082 CCRCC WXS tissue_normal CPT0109940006 CPT0109940006.WholeExome.RP-1303.bam 22450572325 BAM aligned CPTAC3 86946eab-49a8-48a6-8934-924af2286174 a61b5b6d0b87ab6d3bde3beb79c337b3 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.WXS.A.hg38 C3N-02082 CCRCC WXS tissue_normal CPT0109940006 8e48b378-88aa-48f5-a10f-06b77a827e48_wxs_gdc_realn.bam 30894585617 BAM harmonized CPTAC3 a3fe912f-90fe-4b61-b48d-34ee8759957a 016d8e55857d2ed602cfe4f0205d3d48 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02082.WXS.N C3N-02082 CCRCC WXS blood_normal CPT0146260002 CPT0146260002.WholeExome.RP-1303.bam 22472247944 BAM aligned CPTAC3 5535e3ed-d09d-4433-bfca-5b232f90c449 1618bf06dbba3767d6a67b07e462f58a {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02082.WXS.N.hg38 C3N-02082 CCRCC WXS blood_normal CPT0146260002 8a383b2d-4851-4a69-b2f1-437b2d2f1012_wxs_gdc_realn.bam 30719750547 BAM harmonized CPTAC3 92180a7f-105f-4bbf-981f-daf3afd6ec14 e75e99b444a2d09721a133b9a8455062 {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02082.WXS.T C3N-02082 CCRCC WXS tumor CPT0109920007 CPT0109920007.WholeExome.RP-1303.bam 27228105645 BAM aligned CPTAC3 ce38f8e6-5457-4621-9b93-8f47b5ab425f d9bcee437287767f1edece2db3826511 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor"} -C3N-02082.WXS.T.hg38 C3N-02082 CCRCC WXS tumor CPT0109920007 3d1fdc85-55b2-4761-a1c5-4626d8281bad_wxs_gdc_realn.bam 37931643632 BAM harmonized CPTAC3 658dbec0-6a18-4386-9184-1f1fcc894507 7f9514c437e12d0e7c61557d1a195401 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor"} -C3N-02084.MethArray.Green.T C3N-02084 CCRCC Methylation_Array tumor CPT0109950007 203219650211_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 d38403f5-ae26-49b5-a112-9e7718bed1a7 f73de7535f3220cdf1eefc8641fac413 {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor"} -C3N-02084.MethArray.Red.T C3N-02084 CCRCC Methylation_Array tumor CPT0109950007 203219650211_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 585d4750-7441-4589-a967-056494839fd1 1a838be2d00672350d15076a9aa940d2 {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor"} -C3N-02084.miRNA-Seq.A.hg38 C3N-02084 CCRCC miRNA-Seq tissue_normal CPT0109970006 b635b134-e4be-47ce-be31-526a62b45814_mirnaseq_gdc_realn.bam 239623594 BAM harmonized CPTAC3 f83ce38b-2fc2-44cd-9c20-67eef12a3173 b9cbe6eb9691552b66b969b1825b9219 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02084.miRNA-Seq.S12_L002_R1.A C3N-02084 CCRCC miRNA-Seq tissue_normal CPT0109970006 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L002_R1_001.unaln.bam 218468822 BAM S12_L002_R1 unaligned CPTAC3 f1e84b64-7c19-4d86-abf8-f3e370dbdb56 1a7b2242e7fa1e992a487ac2a6b20a27 {"aliquot_tag": "ALQ_e66826b0", "sample": "S12", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02084.miRNA-Seq.S40_L003_R1.T C3N-02084 CCRCC miRNA-Seq tumor CPT0109950010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTCAGA_S40_L003_R1_001.unaln.bam 243840113 BAM S40_L003_R1 unaligned CPTAC3 a08fa66d-18aa-4073-a047-7e6fe1406eb0 7324f981a2eca7ad8593b289868521d8 {"aliquot_tag": "ALQ_6cd0e1a4", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02084.miRNA-Seq.T.hg38 C3N-02084 CCRCC miRNA-Seq tumor CPT0109950010 ce1f0948-69b9-450f-9038-5ecacd11511f_mirnaseq_gdc_realn.bam 270956514 BAM harmonized CPTAC3 76729f91-930e-4139-9d0e-09aa0a2b6206 ef4649361ce3f385ae9116fcc277c63c {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor"} -C3N-02084.RNA-Seq.chimeric.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.chimeric.gdc_realn.bam 92738561 BAM chimeric harmonized CPTAC3 ca324daf-fb75-4bad-913c-428eb1363888 0d790121375ed3cd4ec53102a8b96059 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02084.RNA-Seq.chimeric.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.chimeric.gdc_realn.bam 37900263 BAM chimeric harmonized CPTAC3 daeee1eb-90a4-485f-9859-cf35a44d35d0 18c8af0006b87480361063e8f8dd231f {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor"} -C3N-02084.RNA-Seq.genomic.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.genomic.gdc_realn.bam 7916728025 BAM genomic harmonized CPTAC3 b78e38a8-f31e-4eed-bf15-91821626655a 692460c42d0ce50087e4fba891fbf010 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02084.RNA-Seq.genomic.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.genomic.gdc_realn.bam 9646168734 BAM genomic harmonized CPTAC3 3472bff9-62ab-4962-95ee-49bab2befc9e f878feb6ef8f4e03bbe3ee5118ee4838 {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor"} -C3N-02084.RNA-Seq.S1_L005_R1.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R1_001.fastq.gz 3569917919 FASTQ S1_L005_R1 unaligned CPTAC3 16b913d0-3f43-4f74-b229-f9ad8a1baf73 206b6549d2bcacfeaab8f578f03043d0 {"aliquot_tag": "ALQ_e66826b0", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02084.RNA-Seq.S1_L005_R2.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R2_001.fastq.gz 4061013317 FASTQ S1_L005_R2 unaligned CPTAC3 8b3f0a4f-6e07-4f26-80fa-6fe6714a4f05 9da9703a1e1c4b73ccbae1bb24e45190 {"aliquot_tag": "ALQ_e66826b0", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02084.RNA-Seq.S4_L001_R1.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R1_001.fastq.gz 4604187532 FASTQ S4_L001_R1 unaligned CPTAC3 dd540f67-bb54-4f83-81e4-643bab062cc6 d55e62b42f0ac95895f6d1c07425c974 {"aliquot_tag": "ALQ_6cd0e1a4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02084.RNA-Seq.S4_L001_R2.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R2_001.fastq.gz 4697965186 FASTQ S4_L001_R2 unaligned CPTAC3 82d40117-4569-49fb-9a79-c6479446355e c481cf01ab876e011d8b26dd136e8670 {"aliquot_tag": "ALQ_6cd0e1a4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02084.RNA-Seq.transcriptome.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.transcriptome.gdc_realn.bam 9183138847 BAM transcriptome harmonized CPTAC3 8e37e383-2bca-4418-94cf-b9a1962ed934 496a9ec50f9fe2d5cceabda218895e25 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02084.RNA-Seq.transcriptome.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.transcriptome.gdc_realn.bam 12390321067 BAM transcriptome harmonized CPTAC3 3143f3a0-7564-4d01-9c75-a1fa02e6d0fa 8d5a3f4508965b1dae5e3f0c9d6d5931 {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor"} -C3N-02084.WGS.N C3N-02084 CCRCC WGS blood_normal CPT0146300002 CPT0146300002.WholeGenome.RP-1303.bam 63788369068 BAM aligned CPTAC3 6fe98032-2d04-47f6-aac7-de76c09dcbb3 c2bc3697ac5b92a4184c5dc43d7eb622 {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02084.WGS.N.hg38 C3N-02084 CCRCC WGS blood_normal CPT0146300002 0052b10f-fcc4-4d9b-b6c0-4af66673b043_wgs_gdc_realn.bam 93407439962 BAM harmonized CPTAC3 87142a1c-0651-46f8-8292-823e39f28bf9 1c78d41595dbe2794fa01d717a33b8ab {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02084.WGS.T C3N-02084 CCRCC WGS tumor CPT0109950007 CPT0109950007.WholeGenome.RP-1303.bam 61247226513 BAM aligned CPTAC3 3b509c21-da48-44b4-98cb-2453f4bbc8fa 1f9583d6b99a81e6acba3efb9a921b5f {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor"} -C3N-02084.WGS.T.hg38 C3N-02084 CCRCC WGS tumor CPT0109950007 fc7d756e-eca7-46e7-af28-e0987dfcffec_wgs_gdc_realn.bam 92389798988 BAM harmonized CPTAC3 37705716-ec12-4d49-89ec-a3b467f64385 25a0c46895d28e341720192da449d25d {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor"} -C3N-02084.WXS.N C3N-02084 CCRCC WXS blood_normal CPT0146300002 CPT0146300002.WholeExome.RP-1303.bam 24885554335 BAM aligned CPTAC3 8570fc0d-bc8c-4304-84b0-fc5f501b386e ee643e331eb6cbdb20b121707df0f9d9 {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02084.WXS.N.hg38 C3N-02084 CCRCC WXS blood_normal CPT0146300002 0052b10f-fcc4-4d9b-b6c0-4af66673b043_wxs_gdc_realn.bam 34557773930 BAM harmonized CPTAC3 f71a8b26-6890-452f-9e2b-9065a362da96 92c7c8cae45d5e6beed4bda58a775e8f {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02084.WXS.T C3N-02084 CCRCC WXS tumor CPT0109950007 CPT0109950007.WholeExome.RP-1303.bam 23671696272 BAM aligned CPTAC3 5f35288d-7ea2-4dac-a0d6-0a44198066cf 93f908d7098a7f29b9f91267c5f9c5be {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor"} -C3N-02084.WXS.T.hg38 C3N-02084 CCRCC WXS tumor CPT0109950007 fc7d756e-eca7-46e7-af28-e0987dfcffec_wxs_gdc_realn.bam 32135836258 BAM harmonized CPTAC3 780580e0-d3d4-4312-8dec-a7c0eac6382d dd7e94f582ef5595e8c0b3a27f0d8e2c {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor"} -C3N-02085.MethArray.Green.T C3N-02085 CCRCC Methylation_Array tumor CPT0109980007 203219650065_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fb695b34-889e-4bf2-85d4-6f06ad68b403 a6e6a098c2498ff6704316e9719d1851 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor"} -C3N-02085.MethArray.Red.T C3N-02085 CCRCC Methylation_Array tumor CPT0109980007 203219650065_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ca56c05-7821-4b39-a7e9-6c5b448cd5fe 8e8b3b654b50b395c9f9d746791386a6 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor"} -C3N-02085.miRNA-Seq.S5_L004_R1.T C3N-02085 CCRCC miRNA-Seq tumor CPT0109980010 190108_UNC31-K00269_0176_AHYGLVBBXX_ACAGTG_S5_L004_R1_001.unaln.bam 203619636 BAM S5_L004_R1 unaligned CPTAC3 e92b27ea-d0a1-401a-a201-5957266d0c8e b1b40514b5a3bad36fe8c7ef898221c0 {"aliquot_tag": "ALQ_94402515", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02085.miRNA-Seq.T.hg38 C3N-02085 CCRCC miRNA-Seq tumor CPT0109980010 298c2a3a-5721-4bf8-9ae7-2d2304c4202d_mirnaseq_gdc_realn.bam 224693915 BAM harmonized CPTAC3 c7b9c7ab-7e72-4479-b3aa-16b019181a3e 311dbff37acb96d9ac63111623427bbb {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor"} -C3N-02085.RNA-Seq.chimeric.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.chimeric.gdc_realn.bam 86671093 BAM chimeric harmonized CPTAC3 8d0d1c06-bdf6-4782-ab55-d24033f413b5 c3985d51a6536b585648b5655b410c07 {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor"} -C3N-02085.RNA-Seq.genomic.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.genomic.gdc_realn.bam 7778517202 BAM genomic harmonized CPTAC3 58f3d230-4ebd-4d62-b8e4-9da15f438f20 d9eff04190989b7b6c280af4a8084910 {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor"} -C3N-02085.RNA-Seq.S5_L002_R1.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3585236660 FASTQ S5_L002_R1 unaligned CPTAC3 e4c95dc0-61f0-48fd-b9ed-5933a0abe579 174246f310cf059b9c73846aa4181c59 {"aliquot_tag": "ALQ_94402515", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02085.RNA-Seq.S5_L002_R2.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4032516129 FASTQ S5_L002_R2 unaligned CPTAC3 c7482138-2a11-466d-84bf-bdfa9115286d 0055f70fa1544ad25f457f6f6d20c17f {"aliquot_tag": "ALQ_94402515", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02085.RNA-Seq.transcriptome.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.transcriptome.gdc_realn.bam 9175876786 BAM transcriptome harmonized CPTAC3 7ccb1742-cf72-4094-b0a4-95cb7c2b4bf1 dbeb4b28baf439e11c110b81b707ebf8 {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor"} -C3N-02085.WGS.N C3N-02085 CCRCC WGS blood_normal CPT0146340002 CPT0146340002.WholeGenome.RP-1303.bam 59224158033 BAM aligned CPTAC3 b50ffe6c-9b6d-455c-9c24-e183185e0821 8dc582f49d87f476c81506766515ad03 {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02085.WGS.N.hg38 C3N-02085 CCRCC WGS blood_normal CPT0146340002 1daa8e7e-a212-4407-9687-f589a8ad6680_wgs_gdc_realn.bam 85660629219 BAM harmonized CPTAC3 f3df1eb7-e0d3-4a70-9e29-5c588369c2e0 85bb091d6cf9611f9acbb471e13f2993 {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02085.WGS.T C3N-02085 CCRCC WGS tumor CPT0109980007 CPT0109980007.WholeGenome.RP-1303.bam 64233555307 BAM aligned CPTAC3 7e474663-cabd-4f08-bbd3-9be4d428d2a3 094f154dd0650e0ab0229891501fa88a {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor"} -C3N-02085.WGS.T.hg38 C3N-02085 CCRCC WGS tumor CPT0109980007 ef04fd99-79e1-437a-9843-53dec4a298f0_wgs_gdc_realn.bam 95145315636 BAM harmonized CPTAC3 f1fbb9fd-471d-4901-b20a-78619b5939fc a945bd57565bf7cfdd89f3bbbd69952e {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor"} -C3N-02085.WXS.N C3N-02085 CCRCC WXS blood_normal CPT0146340002 CPT0146340002.WholeExome.RP-1303.bam 16700952688 BAM aligned CPTAC3 03387211-7369-4693-8b2f-43b065a10e5f e7340438a918c856269c90b0a35f517f {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02085.WXS.N.hg38 C3N-02085 CCRCC WXS blood_normal CPT0146340002 1daa8e7e-a212-4407-9687-f589a8ad6680_wxs_gdc_realn.bam 23021032827 BAM harmonized CPTAC3 64836817-1ec8-441f-9281-8040ac53fcfe bb56edb9dc631c461cc7bd4653985dea {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02085.WXS.T C3N-02085 CCRCC WXS tumor CPT0109980007 CPT0109980007.WholeExome.RP-1303.bam 20902064321 BAM aligned CPTAC3 b8fe2dd0-6544-4064-83bf-787f80d82a71 a1aa0f2d05dc3ccd13213eb5f01bced5 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor"} -C3N-02085.WXS.T.hg38 C3N-02085 CCRCC WXS tumor CPT0109980007 ef04fd99-79e1-437a-9843-53dec4a298f0_wxs_gdc_realn.bam 29374420898 BAM harmonized CPTAC3 bbf0b425-1023-4713-836e-96b073e45c2b 4c8daafe9ca4ec5e3092d699452402e6 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor"} -C3N-02087.MethArray.Green.A C3N-02087 LUAD Methylation_Array tissue_normal CPT0118240009 203027390089_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b05f12b1-7791-49df-8cdf-3841b15eb749 5ec82c37c93e99488fedd6e4e422d97f {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.MethArray.Green.T C3N-02087 LUAD Methylation_Array tumor CPT0118200009 202234380069_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1c0ec889-52d6-4084-b072-e386438d2add ecf113ef22da7cb38f15590d51535a61 {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor"} -C3N-02087.MethArray.Red.A C3N-02087 LUAD Methylation_Array tissue_normal CPT0118240009 203027390089_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 051de74e-a16b-4ebf-8139-44591e299745 bd309e4d30a1997bb2d7922a650e2923 {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.MethArray.Red.T C3N-02087 LUAD Methylation_Array tumor CPT0118200009 202234380069_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 c5a45fd9-298a-44d5-9937-ae5c23ed6e2c fee32ba21f0b0ec593286ea0232432ac {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor"} -C3N-02087.miRNA-Seq.A.hg38 C3N-02087 LUAD miRNA-Seq tissue_normal CPT0118240006 240d4bd1-7915-4408-8c10-6139b51e434c_mirnaseq_gdc_realn.bam 234436008 BAM harmonized CPTAC3 09525307-cf74-42f0-9688-b28dc79e2c34 d86d240cba3e3943668accad0fb9690d {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.miRNA-Seq.S36_L005_R1.A C3N-02087 LUAD miRNA-Seq tissue_normal CPT0118240006 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L005_R1_001.unaln.bam 212254168 BAM S36_L005_R1 unaligned CPTAC3 f2063e3a-107b-4b98-8e69-1bb5046cd6fd 923a23481ca83c50f199ec1cb6571671 {"aliquot_tag": "ALQ_a1d2a789", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.miRNA-Seq.S7_L004_R1.T C3N-02087 LUAD miRNA-Seq tumor CPT0118200006 181119_UNC31-K00269_0165_AH27WCBBXY_CACGAT_S7_L004_R1_001.unaln.bam 247696396 BAM S7_L004_R1 unaligned CPTAC3 c2a07a52-9f54-44ae-94d4-0298d3bc2a0f dca7f159aabd748068b21a950324bf9f {"aliquot_tag": "ALQ_54520149", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02087.miRNA-Seq.T.hg38 C3N-02087 LUAD miRNA-Seq tumor CPT0118200006 00ca017b-9fa8-4509-ac02-91b1c42493b4_mirnaseq_gdc_realn.bam 277392941 BAM harmonized CPTAC3 87a67073-3dda-4a9d-84cb-75073402a6c9 84d5c6bece23e2dd95f1a569ffb57cb4 {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor"} -C3N-02087.RNA-Seq.chimeric.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.chimeric.gdc_realn.bam 104474674 BAM chimeric harmonized CPTAC3 3f3c28d4-1667-474c-b8fb-036e34d6e904 3d29975c82db8769e376cd097149b287 {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.RNA-Seq.chimeric.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.chimeric.gdc_realn.bam 167030805 BAM chimeric harmonized CPTAC3 793b17d2-e834-408f-bc04-1449104fc7c4 347635d12777196026d881700d4781ea {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor"} -C3N-02087.RNA-Seq.genomic.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.genomic.gdc_realn.bam 7995106898 BAM genomic harmonized CPTAC3 fa4b9ce4-63e1-46a8-958b-39b3331dc138 ec68df439d61dae5153fe7778dd0e0cd {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.RNA-Seq.genomic.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.genomic.gdc_realn.bam 8125099617 BAM genomic harmonized CPTAC3 49a3b003-b9ed-42c4-86f8-07b9902fc036 d373bfcb2ddb5a152585da71417d0c72 {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor"} -C3N-02087.RNA-Seq.S19_L006_R1.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R1_001.fastq.gz 3943617864 FASTQ S19_L006_R1 unaligned CPTAC3 fd9154ef-e737-457a-abb2-827d213c9208 93daa282849b97a3525d8b46e19d6f33 {"aliquot_tag": "ALQ_a1d2a789", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.RNA-Seq.S19_L006_R2.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R2_001.fastq.gz 4339800816 FASTQ S19_L006_R2 unaligned CPTAC3 e919ad05-b157-48c6-9c35-de6f5836d9f4 c7b32bcae5cf42a73a8ca8dc810c60c1 {"aliquot_tag": "ALQ_a1d2a789", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.RNA-Seq.S3_L001_R1.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3532645904 FASTQ S3_L001_R1 unaligned CPTAC3 4956578a-3158-4d54-b3be-15539b03d16c c0e9eec4304d9dc9d635474fbfa68e96 {"aliquot_tag": "ALQ_54520149", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02087.RNA-Seq.S3_L001_R2.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4043090524 FASTQ S3_L001_R2 unaligned CPTAC3 ca986769-376f-45ff-8550-722c3f9e77f2 cdded844cc4615af5c85850d769b32ed {"aliquot_tag": "ALQ_54520149", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02087.RNA-Seq.transcriptome.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.transcriptome.gdc_realn.bam 10703636021 BAM transcriptome harmonized CPTAC3 d74a86e3-021b-4f35-a09b-4faeaef7c6d0 9d4eede43416adc24eb7ca529677c578 {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.RNA-Seq.transcriptome.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.transcriptome.gdc_realn.bam 10409152452 BAM transcriptome harmonized CPTAC3 9a5f852e-a886-44cc-a377-260e92e7ba52 8f4647e4ce29b2854c834c3fa9832a47 {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor"} -C3N-02087.WGS.A C3N-02087 LUAD WGS tissue_normal CPT0118240009 CPT0118240009.WholeGenome.RP-1303.bam 48545834210 BAM aligned CPTAC3 e7a42f1b-0a98-40c9-ad95-de09ad1a22f0 363646ddd8c0cfa68f374a19b9ea0e3b {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.WGS.A.hg38 C3N-02087 LUAD WGS tissue_normal CPT0118240009 ccf3ea6d-9226-4bee-b2fc-aa707444286e_wgs_gdc_realn.bam 71690971040 BAM harmonized CPTAC3 922ee30b-5c7e-4a87-8406-d5f33750b974 d6601d1644e6ab6d3528c61e45811dc6 {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.WGS.N C3N-02087 LUAD WGS blood_normal CPT0119450002 CPT0119450002.WholeGenome.RP-1303.bam 55105117560 BAM aligned CPTAC3 26ed2f08-1019-4a82-9251-f187241fc887 caa2a0d855faf6b2a71b0868aed914dd {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal"} -C3N-02087.WGS.N.hg38 C3N-02087 LUAD WGS blood_normal CPT0119450002 0bef2750-db0c-421b-b25c-07c759f7c0d1_wgs_gdc_realn.bam 79932273483 BAM harmonized CPTAC3 4f91d76c-add3-4844-9405-eaf7825974d5 ae8111d70b5d94bdb2cd155e79415dba {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal"} -C3N-02087.WGS.T C3N-02087 LUAD WGS tumor CPT0118200009 CPT0118200009.WholeGenome.RP-1303.bam 63141422680 BAM aligned CPTAC3 83f49af0-f333-4e19-a7b0-506f155512e5 a188358b11e1ab0eea3ba29d14fe7c3d {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor"} -C3N-02087.WGS.T.hg38 C3N-02087 LUAD WGS tumor CPT0118200009 ac4cd440-fb64-46db-9050-79c687dc37c8_wgs_gdc_realn.bam 93851243635 BAM harmonized CPTAC3 eccc9ec3-501f-45f3-8e3c-559f4f8446a4 57e522d6163383546819d581cd267613 {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor"} -C3N-02087.WXS.A C3N-02087 LUAD WXS tissue_normal CPT0118240009 CPT0118240009.WholeExome.RP-1303.bam 40137320904 BAM aligned CPTAC3 35a97c7f-f33c-4232-9d7d-5fc510ef411f 593f52b2bdf634dd74fa30124103c45f {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.WXS.A.hg38 C3N-02087 LUAD WXS tissue_normal CPT0118240009 ccf3ea6d-9226-4bee-b2fc-aa707444286e_wxs_gdc_realn.bam 53429249476 BAM harmonized CPTAC3 f54a73b2-0f9f-49e4-b851-ba379b2acd60 1e6fd4673daf727856a0aca4e2067e13 {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02087.WXS.N C3N-02087 LUAD WXS blood_normal CPT0119450002 CPT0119450002.WholeExome.RP-1303.bam 26315055798 BAM aligned CPTAC3 ff0a2ef3-c88d-4ec4-b4a2-7aaa8feb2fd6 0b237eb7d680092aa6c2588b59ba9a19 {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal"} -C3N-02087.WXS.N.hg38 C3N-02087 LUAD WXS blood_normal CPT0119450002 0bef2750-db0c-421b-b25c-07c759f7c0d1_wxs_gdc_realn.bam 34244104672 BAM harmonized CPTAC3 f70ab7b9-7cdd-4d6a-bf94-2aa639167281 484536b2f8a07c45c693d9f3c99207ad {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal"} -C3N-02087.WXS.T C3N-02087 LUAD WXS tumor CPT0118200009 CPT0118200009.WholeExome.RP-1303.bam 26856051590 BAM aligned CPTAC3 641e6d95-25b0-4237-baaf-a5a0209e4eed a76b80619c927695f340edb3ef9e2e56 {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor"} -C3N-02087.WXS.T.hg38 C3N-02087 LUAD WXS tumor CPT0118200009 ac4cd440-fb64-46db-9050-79c687dc37c8_wxs_gdc_realn.bam 37155579105 BAM harmonized CPTAC3 ff8cb924-ad16-4dd2-862d-c2b720f48b9b 8823365b7e5ccf155df38a5c6934fb7b {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor"} -C3N-02088.MethArray.Green.A C3N-02088 LUAD Methylation_Array tissue_normal CPT0118310009 203027390105_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d889e3b9-8d85-4318-a9a9-23d44fdf686b e6d6900c50e666933dcbe761cd8a879c {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.MethArray.Green.T C3N-02088 LUAD Methylation_Array tumor CPT0118290006 202234370095_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 6aaa30ba-3979-4431-aec0-b48d76a7d2a5 36e77323e3cc9932ce9f708e0bacb003 {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor"} -C3N-02088.MethArray.Red.A C3N-02088 LUAD Methylation_Array tissue_normal CPT0118310009 203027390105_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b4170625-b815-467e-843d-26c9a0f36945 9cf1d4a4bb5ef69dd981c90e3e30894d {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.MethArray.Red.T C3N-02088 LUAD Methylation_Array tumor CPT0118290006 202234370095_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 5b957dee-5172-4658-b2f5-63774ade367c be5cf3c0626c6791533649808ddf7a8b {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor"} -C3N-02088.miRNA-Seq.A.hg38 C3N-02088 LUAD miRNA-Seq tissue_normal CPT0118310006 59aeba00-b6de-42ef-8014-88d21a59b894_mirnaseq_gdc_realn.bam 265176171 BAM harmonized CPTAC3 7be0ed66-146e-478e-8809-ab2f7695ef22 9ea2cc8642bf65d7f0a370f6594da65a {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.miRNA-Seq.S12_L004_R1.T C3N-02088 LUAD miRNA-Seq tumor CPT0118290009 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L004_R1_001.unaln.bam 250215606 BAM S12_L004_R1 unaligned CPTAC3 ced5682b-e0f8-408c-b57d-eebb7d24f57c 1cda16adbb0ef4e07d245a99ca07b719 {"aliquot_tag": "ALQ_c9fd7ea9", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02088.miRNA-Seq.S37_L005_R1.A C3N-02088 LUAD miRNA-Seq tissue_normal CPT0118310006 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L005_R1_001.unaln.bam 239801085 BAM S37_L005_R1 unaligned CPTAC3 d69b6236-b4b6-430c-927d-c91bf9c3e1cf 0f103c87172ffa09f00e1c924bbeab65 {"aliquot_tag": "ALQ_a26efb5c", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.miRNA-Seq.T.hg38 C3N-02088 LUAD miRNA-Seq tumor CPT0118290009 b7af346c-47ca-4077-93a7-d93a82fa9abc_mirnaseq_gdc_realn.bam 270952139 BAM harmonized CPTAC3 dba8dff2-c51f-437e-8ec8-aa7ce18ae754 17cf962b6a3ea213ede0e98acdc6c80a {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor"} -C3N-02088.RNA-Seq.chimeric.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.chimeric.gdc_realn.bam 139883611 BAM chimeric harmonized CPTAC3 89165a8b-370d-455b-bb86-c2c8eb2b4d27 62fb4a9cdc57dcf60ea92de691eb06c8 {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.RNA-Seq.chimeric.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.chimeric.gdc_realn.bam 182168855 BAM chimeric harmonized CPTAC3 5b42212d-7d74-4c4a-87e7-0a3c79813fcf 765db8e934761c17bbd02173c5a88b50 {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor"} -C3N-02088.RNA-Seq.genomic.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.genomic.gdc_realn.bam 8145757366 BAM genomic harmonized CPTAC3 f72dd2c5-1dfb-4481-b9f2-e2948a82c611 a797bfc42d192f7e33a340f7bd46e8fa {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.RNA-Seq.genomic.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.genomic.gdc_realn.bam 9128267851 BAM genomic harmonized CPTAC3 7e17c07e-8e72-499c-b3bc-2f267a7c3b8f 515d11fb52e4f11362cc9f8758a7a01c {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor"} -C3N-02088.RNA-Seq.S21_L006_R1.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3988623213 FASTQ S21_L006_R1 unaligned CPTAC3 de174032-38c7-4a4e-afd6-e62a48933eb5 207293dfafd75e0a3edcc5b4f42244b3 {"aliquot_tag": "ALQ_a26efb5c", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.RNA-Seq.S21_L006_R2.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4462595186 FASTQ S21_L006_R2 unaligned CPTAC3 2ddac2ea-812f-4ec5-8ee1-11d1e1f68fad 5ae225b79a93d2cf6c821cc30b85becd {"aliquot_tag": "ALQ_a26efb5c", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.RNA-Seq.S6_L008_R1.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 4337153116 FASTQ S6_L008_R1 unaligned CPTAC3 c41683b4-49ec-48f7-b121-f24f68571a6c f624a0def72af27947e3f01609705ccb {"aliquot_tag": "ALQ_c9fd7ea9", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02088.RNA-Seq.S6_L008_R2.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4807951183 FASTQ S6_L008_R2 unaligned CPTAC3 904d799d-96ec-4f6d-adc1-b0e210d31122 77be07122b5ceea38210e952fd2b4e6a {"aliquot_tag": "ALQ_c9fd7ea9", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02088.RNA-Seq.transcriptome.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.transcriptome.gdc_realn.bam 9900302561 BAM transcriptome harmonized CPTAC3 8f03eeba-e3b3-4177-a096-ddc83df83fac d98cf1053732cca42ad033009725f80e {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.RNA-Seq.transcriptome.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.transcriptome.gdc_realn.bam 12548700075 BAM transcriptome harmonized CPTAC3 d64e8230-5f33-44b8-93b6-6175d80eed03 e8d2d4edeb2596a0c3cdfc2d08ff6998 {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor"} -C3N-02088.WGS.A C3N-02088 LUAD WGS tissue_normal CPT0118310009 CPT0118310009.WholeGenome.RP-1303.bam 52416460437 BAM aligned CPTAC3 93afd6ad-639c-4473-adaf-fc9c13d5a424 89dffbe593768ce90ae2afbba667bb4a {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.WGS.A.hg38 C3N-02088 LUAD WGS tissue_normal CPT0118310009 56eed8b7-85b5-40b4-906d-a6bad5a33ce9_wgs_gdc_realn.bam 77101901142 BAM harmonized CPTAC3 2d1961c3-0e09-4f0e-a179-d3d77108ae09 2f53b666977c61c13da4d651af19deb8 {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.WGS.N C3N-02088 LUAD WGS blood_normal CPT0119510002 CPT0119510002.WholeGenome.RP-1303.bam 61670658984 BAM aligned CPTAC3 16819bf7-cde9-4155-8db9-917931cbe6aa 4429b2e99f8c41563e6f522dbd3cca52 {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-02088.WGS.N.hg38 C3N-02088 LUAD WGS blood_normal CPT0119510002 b6ace695-9412-4adc-956d-2ef198d638fe_wgs_gdc_realn.bam 93528163478 BAM harmonized CPTAC3 37bfe145-53c7-4a30-81a1-230c864debac 090569caa37e566e651cfde79a1d6bc4 {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-02088.WGS.T C3N-02088 LUAD WGS tumor CPT0118290006 CPT0118290006.WholeGenome.RP-1303.bam 73434232319 BAM aligned CPTAC3 93751ba4-8e43-4c9f-a031-488894fffd4d be354706e65e94a7f205095e6a9c0fd2 {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor"} -C3N-02088.WGS.T.hg38 C3N-02088 LUAD WGS tumor CPT0118290006 2c104e43-5d4a-4308-abe5-804e815b6d78_wgs_gdc_realn.bam 108936176788 BAM harmonized CPTAC3 19bf24e7-224f-41de-8a2e-b746771f9993 62ae239d6cac1b10a0565d9e900451a1 {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor"} -C3N-02088.WXS.A C3N-02088 LUAD WXS tissue_normal CPT0118310009 CPT0118310009.WholeExome.RP-1303.bam 53703754133 BAM aligned CPTAC3 562a6bf6-1e0d-4649-90cd-166a1657af62 5554d3a0bfe4bc58069e6b6d4d140d0b {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.WXS.A.hg38 C3N-02088 LUAD WXS tissue_normal CPT0118310009 56eed8b7-85b5-40b4-906d-a6bad5a33ce9_wxs_gdc_realn.bam 71728409886 BAM harmonized CPTAC3 4e031bfc-0122-4f9d-81cd-27869583960d 6e46c2e928b73538b5073b954335b96a {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02088.WXS.N C3N-02088 LUAD WXS blood_normal CPT0119510002 CPT0119510002.WholeExome.RP-1303.bam 27028466714 BAM aligned CPTAC3 a3594a59-dc83-4c1d-8a6b-35a1e3b452b7 982e4a52223a4c4043258a32534d439d {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-02088.WXS.N.hg38 C3N-02088 LUAD WXS blood_normal CPT0119510002 b6ace695-9412-4adc-956d-2ef198d638fe_wxs_gdc_realn.bam 36154225292 BAM harmonized CPTAC3 aa4e5b5f-1b25-45f9-ae87-cfd762d9d03a 4050ca167373529105ab64521e6534de {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-02088.WXS.T C3N-02088 LUAD WXS tumor CPT0118290006 CPT0118290006.WholeExome.RP-1303.bam 28296573218 BAM aligned CPTAC3 1af0db49-33b3-47d5-aa94-2d5000e64e88 6fcbde9b729147fdbad5122fe16cbc9e {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor"} -C3N-02088.WXS.T.hg38 C3N-02088 LUAD WXS tumor CPT0118290006 2c104e43-5d4a-4308-abe5-804e815b6d78_wxs_gdc_realn.bam 38383949514 BAM harmonized CPTAC3 d766e7d6-51a3-4b5c-8cd1-956e4119d2a7 e5415db839b88b576f92bae0db75c5cb {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor"} -C3N-02089.MethArray.Green.A C3N-02089 LUAD Methylation_Array tissue_normal CPT0118360009 203028200104_R06C01_Grn.idat 13676238 IDAT Green NA CPTAC3 5aeaa1e9-66a5-4a84-9bb0-0b68e7701c0e 5dc65d62eef480d92958666d678f3b0a {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.MethArray.Green.T C3N-02089 LUAD Methylation_Array tumor CPT0118340006 202234370079_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b49185b-ef11-4b9f-8c9c-907900042ef9 d843b584adeae784a4839998125213e6 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor"} -C3N-02089.MethArray.Red.A C3N-02089 LUAD Methylation_Array tissue_normal CPT0118360009 203028200104_R06C01_Red.idat 13676238 IDAT Red NA CPTAC3 0acd56a4-e06a-4fe9-9242-705c486c781e cbd2c00ac231a552dcafa5410bf74c9f {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.MethArray.Red.T C3N-02089 LUAD Methylation_Array tumor CPT0118340006 202234370079_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 7b78d1a5-1b5a-4d83-ac38-90e9877911bb 580faed222c12c0fab70eab2d56809d3 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor"} -C3N-02089.miRNA-Seq.A.hg38 C3N-02089 LUAD miRNA-Seq tissue_normal CPT0118360006 a02d863e-f3de-4de4-bab1-c9cbc4550e21_mirnaseq_gdc_realn.bam 310009244 BAM harmonized CPTAC3 74e53ea3-b5ac-4a01-bb3b-56bbc11a39ee 47cfd21d71552df57c957a13d7e179b7 {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.miRNA-Seq.S13_L004_R1.T C3N-02089 LUAD miRNA-Seq tumor CPT0118340009 181119_UNC31-K00269_0165_AH27WCBBXY_CGGAAT_S13_L004_R1_001.unaln.bam 242455672 BAM S13_L004_R1 unaligned CPTAC3 d3244482-335f-43ad-ae70-6617e669a35c e5b637713125b801e479b8cc9203dbfc {"aliquot_tag": "ALQ_fa3169bd", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02089.miRNA-Seq.S38_L005_R1.A C3N-02089 LUAD miRNA-Seq tissue_normal CPT0118360006 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L005_R1_001.unaln.bam 279509337 BAM S38_L005_R1 unaligned CPTAC3 39287023-864c-4fe2-a590-21bddf937f8a 29ec331cbbbc27aa0cbad8de4268a6ad {"aliquot_tag": "ALQ_104e274c", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.miRNA-Seq.T.hg38 C3N-02089 LUAD miRNA-Seq tumor CPT0118340009 b0f2aa34-0ca6-44e3-8eb4-5334b8680da1_mirnaseq_gdc_realn.bam 271549208 BAM harmonized CPTAC3 562ff34a-e416-4af3-9aab-b3ffd46a5e7d 2c14f8bfdc16dc4171386a4713fa33cc {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor"} -C3N-02089.RNA-Seq.chimeric.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.chimeric.gdc_realn.bam 132506003 BAM chimeric harmonized CPTAC3 89ef336a-29ef-496d-b4fe-bec90e78dc51 4704dc02a93c8e8e00235d6a98b065f2 {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.RNA-Seq.chimeric.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.chimeric.gdc_realn.bam 160271349 BAM chimeric harmonized CPTAC3 0cc763d9-a767-4cde-ab57-3261996338f6 a841b9b114eb84cebe2a910a381ece4c {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor"} -C3N-02089.RNA-Seq.genomic.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.genomic.gdc_realn.bam 8915906068 BAM genomic harmonized CPTAC3 0a1b15b1-f7f6-44a5-b45c-0689f810cd1e 68c9106410f98bde404c7a41e9fb65f3 {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.RNA-Seq.genomic.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.genomic.gdc_realn.bam 8920853591 BAM genomic harmonized CPTAC3 1f556f48-a65a-4ecf-837f-1d43874e4cbc eb25efd20da116ab162c2336416eddab {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor"} -C3N-02089.RNA-Seq.S17_L005_R1.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R1_001.fastq.gz 4006816794 FASTQ S17_L005_R1 unaligned CPTAC3 6cae1ea6-88e5-40dd-915d-432fc9c93481 10c6bc5b72b4658b72e17771d97428a8 {"aliquot_tag": "ALQ_104e274c", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.RNA-Seq.S17_L005_R2.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R2_001.fastq.gz 4369116046 FASTQ S17_L005_R2 unaligned CPTAC3 3e472cb4-dad7-47d3-a999-ba6a1ba48c6a 3fe1473bd77f927b6513ed72299e24ff {"aliquot_tag": "ALQ_104e274c", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.RNA-Seq.S8_L008_R1.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 3957112705 FASTQ S8_L008_R1 unaligned CPTAC3 f55ad41e-1de0-4cea-a25b-0cd1080a0fa3 58445f1119c42337b3b8c209621cb854 {"aliquot_tag": "ALQ_fa3169bd", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02089.RNA-Seq.S8_L008_R2.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4364269997 FASTQ S8_L008_R2 unaligned CPTAC3 7b5f3cbe-3f29-4590-8489-0df8a8a69033 f9a52f0c673ee07252a14afeeab96fd3 {"aliquot_tag": "ALQ_fa3169bd", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02089.RNA-Seq.transcriptome.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.transcriptome.gdc_realn.bam 9704461517 BAM transcriptome harmonized CPTAC3 1b81021c-6749-4fe4-ba89-58df8f39950f b8ad36c0326de611fe20bf24bc59059d {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.RNA-Seq.transcriptome.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.transcriptome.gdc_realn.bam 10384239278 BAM transcriptome harmonized CPTAC3 51e3bf9b-281f-4e91-a5ea-9e46ca756881 394d472dfe9132d7a91b095c73112844 {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor"} -C3N-02089.WGS.A C3N-02089 LUAD WGS tissue_normal CPT0118360009 CPT0118360009.WholeGenome.RP-1303.bam 57379626853 BAM aligned CPTAC3 cc944745-f147-44aa-8aef-b7b961026a2a bea6c5b777b337cd3c4c3025e8148312 {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.WGS.A.hg38 C3N-02089 LUAD WGS tissue_normal CPT0118360009 979e5009-77c3-42ac-bda6-187ef5352551_wgs_gdc_realn.bam 84071062347 BAM harmonized CPTAC3 0554d971-6cdf-44f4-9e28-6310f8215645 3b400b30c11daf2baf2229459a6f5539 {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.WGS.N C3N-02089 LUAD WGS blood_normal CPT0119570002 CPT0119570002.WholeGenome.RP-1303.bam 56483181536 BAM aligned CPTAC3 dce4a3ed-7499-43cc-9cde-651bd1d3eb8e 4095e68fce2ea1382ddc8b242cbd81ef {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02089.WGS.N.hg38 C3N-02089 LUAD WGS blood_normal CPT0119570002 b9059e86-abad-4281-9c78-366b62c92cc1_wgs_gdc_realn.bam 83290204477 BAM harmonized CPTAC3 cf05d1d8-8660-49bc-82b2-e742eb55e15f f1ceba6ef3509ec889ce56b70cf0ae64 {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02089.WGS.T C3N-02089 LUAD WGS tumor CPT0118340006 CPT0118340006.WholeGenome.RP-1303.bam 67580722022 BAM aligned CPTAC3 0bf2a8bf-1a36-4983-bd6b-2e61b6a2c29a 454193f448bda9ab9f59fa0ae079703c {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor"} -C3N-02089.WGS.T.hg38 C3N-02089 LUAD WGS tumor CPT0118340006 84900de9-1209-4719-bcc0-f155224277c3_wgs_gdc_realn.bam 98152159489 BAM harmonized CPTAC3 a074a7e3-63bd-4df5-93e8-29a97cd6dd87 a0e136e193747fda3361cb28ff69b9c5 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor"} -C3N-02089.WXS.A C3N-02089 LUAD WXS tissue_normal CPT0118360009 CPT0118360009.WholeExome.RP-1303.bam 28406098301 BAM aligned CPTAC3 d9ff3746-b981-4e33-8b4a-d6e7cdc1d213 1f0c44c1e3ef9bf89ba544dd33f622cf {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.WXS.A.hg38 C3N-02089 LUAD WXS tissue_normal CPT0118360009 979e5009-77c3-42ac-bda6-187ef5352551_wxs_gdc_realn.bam 37945356644 BAM harmonized CPTAC3 d2cd63c4-3df2-46ad-aef0-b9031ad2d0bd da8640909f879cfd9fd82bec6bfdc752 {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02089.WXS.N C3N-02089 LUAD WXS blood_normal CPT0119570002 CPT0119570002.WholeExome.RP-1303.bam 30342061198 BAM aligned CPTAC3 570cb86c-7f9d-495e-9b63-78728341b5b5 24492b53aa6201974ea675b5c3a2fada {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02089.WXS.N.hg38 C3N-02089 LUAD WXS blood_normal CPT0119570002 b9059e86-abad-4281-9c78-366b62c92cc1_wxs_gdc_realn.bam 39843032408 BAM harmonized CPTAC3 9efddfc1-9d19-4892-a8ee-21bd626507cf fc22f8c75dda747072b97c1c5488c2c0 {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02089.WXS.T C3N-02089 LUAD WXS tumor CPT0118340006 CPT0118340006.WholeExome.RP-1303.bam 29782252180 BAM aligned CPTAC3 2e60df94-1801-406c-b622-9fe9793386b0 ed252d23f5a6339d1cd9520cb207eed7 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor"} -C3N-02089.WXS.T.hg38 C3N-02089 LUAD WXS tumor CPT0118340006 84900de9-1209-4719-bcc0-f155224277c3_wxs_gdc_realn.bam 40438793522 BAM harmonized CPTAC3 12a437cd-b438-4fdc-b7f5-33b0b3fd8756 567442470b5f09afa12cb06874d270a4 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor"} -C3N-02090.MethArray.Green.A C3N-02090 LUAD Methylation_Array tissue_normal CPT0118410009 203027390091_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d6749c9d-9198-4cd6-945c-956bf541bc20 b153b1094e7af9c4744266df253548f0 {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.MethArray.Green.T C3N-02090 LUAD Methylation_Array tumor CPT0118400006 202234380099_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 17ee1af4-01ee-4173-8a12-e72266513d3c 8866efbf7496cbd934b1c5fe10b223b9 {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor"} -C3N-02090.MethArray.Red.A C3N-02090 LUAD Methylation_Array tissue_normal CPT0118410009 203027390091_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 943ae5ab-3dba-4b73-ba72-27f17a04c3fe f643637919eba1443df6cf456c0f1b13 {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.MethArray.Red.T C3N-02090 LUAD Methylation_Array tumor CPT0118400006 202234380099_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 9ed3d991-2f24-4284-97f6-ab4f3d0412a0 de4adfa638b44de23ce69d70a8394757 {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor"} -C3N-02090.miRNA-Seq.A.hg38 C3N-02090 LUAD miRNA-Seq tissue_normal CPT0118410006 433bc38e-cb28-44e5-9f11-795e07f70448_mirnaseq_gdc_realn.bam 295073507 BAM harmonized CPTAC3 b54a2d0b-9518-445d-9fb5-233a85dcce36 b8714de7d9d8913bde7a45336bcb7d20 {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.miRNA-Seq.S14_L004_R1.T C3N-02090 LUAD miRNA-Seq tumor CPT0118400009 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L004_R1_001.unaln.bam 236069079 BAM S14_L004_R1 unaligned CPTAC3 8998f8ef-e988-45c6-8bae-76134c838031 09e729e8e7726027110c38061864e9d8 {"aliquot_tag": "ALQ_12b4ffc5", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02090.miRNA-Seq.S39_L005_R1.A C3N-02090 LUAD miRNA-Seq tissue_normal CPT0118410006 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L005_R1_001.unaln.bam 267050574 BAM S39_L005_R1 unaligned CPTAC3 632c7cd7-a6c2-49ca-9488-beedbad1fe88 c7dc93f8d5cd2e6c5959e2393541036b {"aliquot_tag": "ALQ_bf6bcbe4", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.miRNA-Seq.T.hg38 C3N-02090 LUAD miRNA-Seq tumor CPT0118400009 6af56855-7f72-43f9-8bc1-485b0bcc2243_mirnaseq_gdc_realn.bam 253801738 BAM harmonized CPTAC3 70fb4abf-7167-482f-b6cb-f2ec27e70c62 b97a4a3f6bd9fdcfac8ff3b72f82adfe {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor"} -C3N-02090.RNA-Seq.chimeric.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.chimeric.gdc_realn.bam 137402159 BAM chimeric harmonized CPTAC3 63641794-618a-4d93-abaa-e86243545b25 bf2201592b192e91d0a721667cc275cf {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.RNA-Seq.chimeric.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.chimeric.gdc_realn.bam 108705140 BAM chimeric harmonized CPTAC3 7ade0c41-44f0-4cc0-b532-0b3e4bff63f6 9ddd31a722531125b2b682514fea34c8 {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor"} -C3N-02090.RNA-Seq.genomic.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.genomic.gdc_realn.bam 8785096664 BAM genomic harmonized CPTAC3 7f44964f-3f12-4666-bfc9-56d7aac25c9c 2d83b33999d2e300e89c7746a8165787 {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.RNA-Seq.genomic.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.genomic.gdc_realn.bam 9617815310 BAM genomic harmonized CPTAC3 8788b316-8d5a-43d1-8728-7165feddeabf a011a49a6b90b0a0adbd0d9dd298ccd9 {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor"} -C3N-02090.RNA-Seq.S16_L005_R1.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4049679833 FASTQ S16_L005_R1 unaligned CPTAC3 63bd9e37-4274-4c07-b880-dcf308ddab13 706215e612ede0dd65aa745d6a978b40 {"aliquot_tag": "ALQ_bf6bcbe4", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.RNA-Seq.S16_L005_R2.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4417367803 FASTQ S16_L005_R2 unaligned CPTAC3 baf794a7-7617-41df-ae12-1dff298766a0 a1dffa2dc1b179bd9028e491bad839ca {"aliquot_tag": "ALQ_bf6bcbe4", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.RNA-Seq.S7_L008_R1.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 4028091448 FASTQ S7_L008_R1 unaligned CPTAC3 a7493980-2b11-4a43-8e50-6e6840aa2022 c62ebd9d63bbcd7a35b9a0971e31484c {"aliquot_tag": "ALQ_12b4ffc5", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02090.RNA-Seq.S7_L008_R2.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 4295268985 FASTQ S7_L008_R2 unaligned CPTAC3 5b473429-77ce-4a37-aa9d-cc2635da3ec8 e9ee0b1e2d0d7398a972777dfd07867a {"aliquot_tag": "ALQ_12b4ffc5", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02090.RNA-Seq.transcriptome.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.transcriptome.gdc_realn.bam 9758980234 BAM transcriptome harmonized CPTAC3 ff7e0747-c386-4518-846d-ca8f9716c5f2 a8c40e87ea57d4415f81bb4f5cc63dcb {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.RNA-Seq.transcriptome.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.transcriptome.gdc_realn.bam 9983681128 BAM transcriptome harmonized CPTAC3 32aee39e-872a-4b92-9954-0273493a2a63 4bac89bad217c44d0fbf90ba159849db {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor"} -C3N-02090.WGS.A C3N-02090 LUAD WGS tissue_normal CPT0118410009 CPT0118410009.WholeGenome.RP-1303.bam 57671007203 BAM aligned CPTAC3 6b629d6b-8b03-4a46-a1cc-a6fa4fd2c5a3 a53b3f3483c8e3388c4afaf2aa3d469f {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.WGS.A.hg38 C3N-02090 LUAD WGS tissue_normal CPT0118410009 483f19ba-872e-4dd1-87bb-376941d19e2c_wgs_gdc_realn.bam 83956334240 BAM harmonized CPTAC3 20e7625f-1dd3-4def-9fa1-95c47bea4835 f483c491456d6728ca9e8cde8b89a04d {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.WGS.N C3N-02090 LUAD WGS blood_normal CPT0119630002 CPT0119630002.WholeGenome.RP-1303.bam 58873017214 BAM aligned CPTAC3 3344c484-7c13-4ada-9edf-efbbc5886261 1dc9b6044d66b615d901cbc64b3c13c1 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal"} -C3N-02090.WGS.N.hg38 C3N-02090 LUAD WGS blood_normal CPT0119630002 c99d5a2a-2601-496f-af7b-2c136670f816_wgs_gdc_realn.bam 87047300448 BAM harmonized CPTAC3 dda1015c-62e1-4f9e-940e-6825b0e1308d 1b05dca56636e6a706402e49749a2108 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal"} -C3N-02090.WGS.T C3N-02090 LUAD WGS tumor CPT0118400006 CPT0118400006.WholeGenome.RP-1303.bam 58175350294 BAM aligned CPTAC3 e200c52e-e213-4c28-a52b-6bae7d3cacab 9d6630a136db6eaadae01a2e4e3f2254 {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor"} -C3N-02090.WGS.T.hg38 C3N-02090 LUAD WGS tumor CPT0118400006 133f4e23-30d9-438f-87fe-f068bb78ccba_wgs_gdc_realn.bam 85201772128 BAM harmonized CPTAC3 02783d14-f14d-4e26-b18d-22075e60bdbc bd99721fbbefd174b8baeb28825d822c {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor"} -C3N-02090.WXS.A C3N-02090 LUAD WXS tissue_normal CPT0118410009 CPT0118410009.WholeExome.RP-1303.bam 37613893147 BAM aligned CPTAC3 ad985ea9-d442-45fb-8a54-c9e869a639ad 6359f89c5759efd80563f2a82d86f954 {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.WXS.A.hg38 C3N-02090 LUAD WXS tissue_normal CPT0118410009 483f19ba-872e-4dd1-87bb-376941d19e2c_wxs_gdc_realn.bam 50942071008 BAM harmonized CPTAC3 343f2ecd-d719-4afa-b02c-3c92c51001c1 223a41ccea2ac27e98a0e076c2b1d2fe {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02090.WXS.N C3N-02090 LUAD WXS blood_normal CPT0119630002 CPT0119630002.WholeExome.RP-1303.bam 32594841952 BAM aligned CPTAC3 1d38b145-dd20-4b90-b5c6-bdcb291e0fcd a25668359086a0fe03c8139a26e29106 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal"} -C3N-02090.WXS.N.hg38 C3N-02090 LUAD WXS blood_normal CPT0119630002 c99d5a2a-2601-496f-af7b-2c136670f816_wxs_gdc_realn.bam 42597429185 BAM harmonized CPTAC3 b8dfaeb8-99ff-4f39-b57b-c25975f6de5e 52e4c89114496624b524ca53ad295873 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal"} -C3N-02090.WXS.T C3N-02090 LUAD WXS tumor CPT0118400006 CPT0118400006.WholeExome.RP-1303.bam 28096701045 BAM aligned CPTAC3 c2998580-eda2-4ded-a23c-27c19e748542 ece23c5855e4d72c9d0918190366888e {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor"} -C3N-02090.WXS.T.hg38 C3N-02090 LUAD WXS tumor CPT0118400006 133f4e23-30d9-438f-87fe-f068bb78ccba_wxs_gdc_realn.bam 37560027297 BAM harmonized CPTAC3 da387610-31b1-4180-bdb0-c9d01c057009 55256ccc824ad4fbf952aefc437922fa {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor"} -C3N-02141.MethArray.Green.A C3N-02141 LUAD Methylation_Array tissue_normal CPT0118470009 203027390049_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3867a101-512a-4d80-8449-aad26f14664b a11ac83f3414fce0532c6bacff19e532 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.MethArray.Green.T C3N-02141 LUAD Methylation_Array tumor CPT0118460006 202234360025_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ee6aa2d6-5ea2-4e34-b3ee-708537161d8b ae2f5aea082ace26f44d6de83124c203 {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor"} -C3N-02141.MethArray.Red.A C3N-02141 LUAD Methylation_Array tissue_normal CPT0118470009 203027390049_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 724952d5-e73a-4f2b-b0f9-5ca33453f346 615f13ccb4db2a5aa7016b489f94f628 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.MethArray.Red.T C3N-02141 LUAD Methylation_Array tumor CPT0118460006 202234360025_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 0061a9c2-ab7e-4809-b094-17d6302dc0b7 098ecef44288ec3f6ef678ea60cef37f {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor"} -C3N-02141.miRNA-Seq.A.hg38 C3N-02141 LUAD miRNA-Seq tissue_normal CPT0118470006 35c8a103-8e84-40fe-8b68-36f3f084a5a5_mirnaseq_gdc_realn.bam 305204431 BAM harmonized CPTAC3 6d7fc0b4-fde5-4ca7-a6a6-d797c65284a7 0a37d9824bfb66a21fc5b0623adaaf59 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.miRNA-Seq.S15_L004_R1.T C3N-02141 LUAD miRNA-Seq tumor CPT0118460009 181119_UNC31-K00269_0165_AH27WCBBXY_CTATAC_S15_L004_R1_001.unaln.bam 294023834 BAM S15_L004_R1 unaligned CPTAC3 b9bf501c-e2c7-47ab-a757-2d527a15c052 d1ebe00a0566f9ea4f6e491ccdc32151 {"aliquot_tag": "ALQ_9df40a65", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02141.miRNA-Seq.S40_L005_R1.A C3N-02141 LUAD miRNA-Seq tissue_normal CPT0118470006 181108_UNC31-K00269_0162_AH255GBBXY_CCGTCC_S40_L005_R1_001.unaln.bam 274483538 BAM S40_L005_R1 unaligned CPTAC3 b67d9b37-c3b7-4119-813d-28b87ce953a0 6b2b99da7f7aaaa68344c5c593d532d2 {"aliquot_tag": "ALQ_302b3e44", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.miRNA-Seq.T.hg38 C3N-02141 LUAD miRNA-Seq tumor CPT0118460009 7116f11b-655d-458d-8965-f15867616114_mirnaseq_gdc_realn.bam 317941617 BAM harmonized CPTAC3 9cd7227d-a8b5-4b22-9177-94ec4bac17f1 ca06a2b2e85fdee19aea741e10809940 {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor"} -C3N-02141.RNA-Seq.chimeric.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.chimeric.gdc_realn.bam 117920768 BAM chimeric harmonized CPTAC3 aa4ccfa5-73bc-4bc0-8479-51f2798a658d 1964447a33d596a344b99282fd0270f2 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.RNA-Seq.chimeric.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.chimeric.gdc_realn.bam 89089722 BAM chimeric harmonized CPTAC3 c8f8b64f-a254-482c-b9fa-df04655c6589 bcd7d8282814f58c1f08c62b4502637e {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor"} -C3N-02141.RNA-Seq.genomic.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.genomic.gdc_realn.bam 8270521489 BAM genomic harmonized CPTAC3 06cc2061-57ab-43ef-9448-47c61fdaf0ec abe3e60e78f63d70fc0dd6a2d0cba327 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.RNA-Seq.genomic.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.genomic.gdc_realn.bam 9053110390 BAM genomic harmonized CPTAC3 f12f5ef4-3ff1-4d2d-b911-d485ac3ac8dc 3b249902e8ae8995f99d2ef9a247036b {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor"} -C3N-02141.RNA-Seq.S15_L005_R1.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3939827787 FASTQ S15_L005_R1 unaligned CPTAC3 52a5af0c-f2a3-4d46-965d-ce9c92537db6 04210e3de76c43908d3e931e540537bb {"aliquot_tag": "ALQ_302b3e44", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.RNA-Seq.S15_L005_R2.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4028003270 FASTQ S15_L005_R2 unaligned CPTAC3 66c0ad73-f4a1-4e83-be0c-83b6741f7537 c44a7188f0e8aca2d806ba69684ef4ae {"aliquot_tag": "ALQ_302b3e44", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.RNA-Seq.S3_L007_R1.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3931214925 FASTQ S3_L007_R1 unaligned CPTAC3 13374d3a-5f40-4428-8f3e-9cf5821f41b4 cb20c3a55571c1b43e84d9e85906b41a {"aliquot_tag": "ALQ_9df40a65", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02141.RNA-Seq.S3_L007_R2.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4371695744 FASTQ S3_L007_R2 unaligned CPTAC3 8e5d70f1-d52e-4288-a4f6-bf1115a72aa5 50b39be78b8c71ea1ff0e00f282ca698 {"aliquot_tag": "ALQ_9df40a65", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02141.RNA-Seq.transcriptome.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.transcriptome.gdc_realn.bam 9157906695 BAM transcriptome harmonized CPTAC3 fa7bbb25-d9d4-4b81-8918-2b5812d1fd6e 57227199a5c6b62bdefc6c6c56088884 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.RNA-Seq.transcriptome.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.transcriptome.gdc_realn.bam 11192306625 BAM transcriptome harmonized CPTAC3 7143fd08-8016-478c-a85f-16ff53fcda62 b367ea8daa8b0ace687284676d87e2a2 {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor"} -C3N-02141.WGS.A C3N-02141 LUAD WGS tissue_normal CPT0118470009 CPT0118470009.WholeGenome.RP-1303.bam 54043357457 BAM aligned CPTAC3 25c78b39-62c9-4180-ae07-e8b01f7cf6eb 928c08e6396160340caf214fcc83bed0 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.WGS.A.hg38 C3N-02141 LUAD WGS tissue_normal CPT0118470009 77df72d0-2c0f-451a-886b-729a5a49fe9e_wgs_gdc_realn.bam 80580473240 BAM harmonized CPTAC3 92c541b8-fda9-4943-96e1-5ff133718d21 bdda41776191b8542360ff66eafa0a2d {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.WGS.N C3N-02141 LUAD WGS blood_normal CPT0119690002 CPT0119690002.WholeGenome.RP-1303.bam 59351101934 BAM aligned CPTAC3 9ae4097b-b7d6-495d-9bef-10baa2f7c660 b06daa7fa4578ec6c26342a6db7ff97d {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02141.WGS.N.hg38 C3N-02141 LUAD WGS blood_normal CPT0119690002 538535a7-8176-444e-92e6-a291311664c9_wgs_gdc_realn.bam 89271278971 BAM harmonized CPTAC3 82531eff-31c2-4309-82f7-d7374032c78b 679a6734ce48dc4788f866e884f478ce {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02141.WGS.T C3N-02141 LUAD WGS tumor CPT0118460006 CPT0118460006.WholeGenome.RP-1303.bam 81670797023 BAM aligned CPTAC3 512e59ea-b15d-4485-a55e-a3a14b7d573e d256d9394d014145e642ca887c922a31 {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor"} -C3N-02141.WGS.T.hg38 C3N-02141 LUAD WGS tumor CPT0118460006 54187d65-be19-4659-87e7-eec96724264f_wgs_gdc_realn.bam 121463101189 BAM harmonized CPTAC3 4aeeccdc-dac1-41f9-b341-6b97a9cc8017 75c7db4c51b82cb6ed7a0b18a40b1af4 {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor"} -C3N-02141.WXS.A C3N-02141 LUAD WXS tissue_normal CPT0118470009 CPT0118470009.WholeExome.RP-1303.bam 27397101911 BAM aligned CPTAC3 e9e54c08-9341-48b8-b85f-90ea32fbab64 4b502017468795ca9b4b67bc2076bcd4 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.WXS.A.hg38 C3N-02141 LUAD WXS tissue_normal CPT0118470009 77df72d0-2c0f-451a-886b-729a5a49fe9e_wxs_gdc_realn.bam 36903157710 BAM harmonized CPTAC3 adbf7e9d-f8e7-4466-a1f0-c42606846ebb 78d9b8d6f1468354ab4510243d5af343 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02141.WXS.N C3N-02141 LUAD WXS blood_normal CPT0119690002 CPT0119690002.WholeExome.RP-1303.bam 31639433561 BAM aligned CPTAC3 5f91b06c-115e-4168-a219-c773b2285054 2bf33b22321ffae89cc30d2b823eda35 {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02141.WXS.N.hg38 C3N-02141 LUAD WXS blood_normal CPT0119690002 538535a7-8176-444e-92e6-a291311664c9_wxs_gdc_realn.bam 42765060728 BAM harmonized CPTAC3 892b1de2-f64a-4692-a536-156b4cb915e2 d39c1cda9e57cac8be36a0870546978a {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02141.WXS.T C3N-02141 LUAD WXS tumor CPT0118460006 CPT0118460006.WholeExome.RP-1303.bam 34418701602 BAM aligned CPTAC3 a600477a-7714-40f5-b50c-2180b708011e 0932d392fdd7395d1dc377455b6f464a {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor"} -C3N-02141.WXS.T.hg38 C3N-02141 LUAD WXS tumor CPT0118460006 54187d65-be19-4659-87e7-eec96724264f_wxs_gdc_realn.bam 46196521153 BAM harmonized CPTAC3 5fd2240e-b014-4e6e-bbf3-f19538e785d4 e1b7a8de038d418044deb8689979089c {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor"} -C3N-02142.MethArray.Green.A C3N-02142 LUAD Methylation_Array tissue_normal CPT0118530009 203027390073_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e5651973-c606-444c-95a9-683a0a9d83fb 57b262fc0d5906d597bc03b7bcf72cea {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.MethArray.Green.T C3N-02142 LUAD Methylation_Array tumor CPT0118510006 202234380058_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b590aa2-96ee-43ed-a780-c12c60cccfaf 88f340f21e08e984a75211969154df57 {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor"} -C3N-02142.MethArray.Red.A C3N-02142 LUAD Methylation_Array tissue_normal CPT0118530009 203027390073_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 4a978c2f-9482-4901-9b80-b4b48acd6a1f 1393b0d0fe321087b4437e07cdfce0ab {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.MethArray.Red.T C3N-02142 LUAD Methylation_Array tumor CPT0118510006 202234380058_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 4b895eac-288d-4ca8-bf22-5958166f14e3 522f1f4ea10bf4cc4eefb5d44656162f {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor"} -C3N-02142.miRNA-Seq.A.hg38 C3N-02142 LUAD miRNA-Seq tissue_normal CPT0118530006 66c55785-e9d2-4bfe-a365-27e8b47b0d9f_mirnaseq_gdc_realn.bam 316836400 BAM harmonized CPTAC3 5eb56e60-f187-44e5-878e-da17cc7885e5 669c757c997be67b81389aac8553f3a9 {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.miRNA-Seq.S16_L004_R1.T C3N-02142 LUAD miRNA-Seq tumor CPT0118510009 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L004_R1_001.unaln.bam 218332072 BAM S16_L004_R1 unaligned CPTAC3 1ad648eb-1fa8-4ea8-89bb-014ab63661d5 5daa0238600b26b93ff88ac92288e12f {"aliquot_tag": "ALQ_e48805d0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02142.miRNA-Seq.S41_L005_R1.A C3N-02142 LUAD miRNA-Seq tissue_normal CPT0118530006 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L005_R1_001.unaln.bam 289213751 BAM S41_L005_R1 unaligned CPTAC3 3fad34b8-dcbf-4d0f-958c-889a45e8ea3b c3b5b1973e5008e16fc924926d369321 {"aliquot_tag": "ALQ_ef74b21", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.miRNA-Seq.T.hg38 C3N-02142 LUAD miRNA-Seq tumor CPT0118510009 088309f7-e140-458e-81a3-7312bee48795_mirnaseq_gdc_realn.bam 240951139 BAM harmonized CPTAC3 848649c8-91cb-4df9-a4a7-041ed972fb8f 97b749a4bdbe4f543347c50ceaeb0124 {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor"} -C3N-02142.RNA-Seq.chimeric.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.chimeric.gdc_realn.bam 120017125 BAM chimeric harmonized CPTAC3 4ec22e10-9550-438e-abb6-71eca8d1a27f 4e7548934714760da5d25a737a24261b {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.RNA-Seq.chimeric.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.chimeric.gdc_realn.bam 127797808 BAM chimeric harmonized CPTAC3 681f42b3-a880-422d-a7fb-c69c1516f827 97fd20c9f7a46d5ea17be94212dc295f {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor"} -C3N-02142.RNA-Seq.genomic.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.genomic.gdc_realn.bam 10093006027 BAM genomic harmonized CPTAC3 2fde099c-d773-4b45-ae32-91087e201de8 5d62d299e09c307a86a8c7b1e684e55a {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.RNA-Seq.genomic.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.genomic.gdc_realn.bam 8830687443 BAM genomic harmonized CPTAC3 bf881673-a81c-46cb-abd6-11bbbb4b8dae 089c10ee575e84e1e91589f11cafe176 {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor"} -C3N-02142.RNA-Seq.S18_L005_R1.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R1_001.fastq.gz 4505798595 FASTQ S18_L005_R1 unaligned CPTAC3 bb829216-c187-4336-84b8-f0f1c64220af aa4a1574d4433bb0c97879fd681ad1c7 {"aliquot_tag": "ALQ_ef74b21", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.RNA-Seq.S18_L005_R2.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R2_001.fastq.gz 5018384513 FASTQ S18_L005_R2 unaligned CPTAC3 4be3adf5-e32b-483c-bf8c-653ea7e322e9 a6d21d1dcc803dec69199145b5370e49 {"aliquot_tag": "ALQ_ef74b21", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.RNA-Seq.S2_L007_R1.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3849498448 FASTQ S2_L007_R1 unaligned CPTAC3 571952bb-c06c-466a-ad6b-5857fc76dde1 28166f3facaeb959f6f12f2e4456e0fe {"aliquot_tag": "ALQ_e48805d0", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02142.RNA-Seq.S2_L007_R2.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 4030858606 FASTQ S2_L007_R2 unaligned CPTAC3 a90f7366-6262-410f-96c7-44efcdef156a 52f623b744d4af23f6cb49ac1fbb4c32 {"aliquot_tag": "ALQ_e48805d0", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02142.RNA-Seq.transcriptome.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.transcriptome.gdc_realn.bam 12210847532 BAM transcriptome harmonized CPTAC3 a9d3c022-1de6-4b6f-b171-6d0bfae30f3e 2c7820be2f830583bf0162d513363b68 {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.RNA-Seq.transcriptome.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.transcriptome.gdc_realn.bam 10404506004 BAM transcriptome harmonized CPTAC3 69debd30-86ca-43c1-b8a0-092cf2a5eb81 7d4e4389f31eecffc6d3a8c7af53764c {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor"} -C3N-02142.WGS.A C3N-02142 LUAD WGS tissue_normal CPT0118530009 CPT0118530009.WholeGenome.RP-1303.bam 55619872624 BAM aligned CPTAC3 27631002-af91-42b7-a8fc-9fa029648d81 32cafdd277a0b61492c13ae6bc58b4bc {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.WGS.A.hg38 C3N-02142 LUAD WGS tissue_normal CPT0118530009 98b6469b-5549-4697-9956-9be5af2ed296_wgs_gdc_realn.bam 80413524966 BAM harmonized CPTAC3 42f6ba5b-a57d-45e1-8eb6-1deb9a118b94 21379a9911087f3a6d83765cfa6b4d84 {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.WGS.N C3N-02142 LUAD WGS blood_normal CPT0119750002 CPT0119750002.WholeGenome.RP-1303.bam 58130859670 BAM aligned CPTAC3 58455428-b128-473d-bcde-37bf9570c74e 134761e87aa6bfe0cbc82d48c20a6f93 {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal"} -C3N-02142.WGS.N.hg38 C3N-02142 LUAD WGS blood_normal CPT0119750002 4e49c64f-2a74-4408-921f-414b511e32af_wgs_gdc_realn.bam 87001001432 BAM harmonized CPTAC3 49729cb6-f10f-4413-8e27-9f4d611f9342 753b0dcd38236ca159dc7c2719caf1e9 {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal"} -C3N-02142.WGS.T C3N-02142 LUAD WGS tumor CPT0118510006 CPT0118510006.WholeGenome.RP-1303.bam 54159833665 BAM aligned CPTAC3 08e0fca3-6a2c-4855-8c35-cec9e9acfe50 89557c6f60bdc5052a9ac07ceca886f1 {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor"} -C3N-02142.WGS.T.hg38 C3N-02142 LUAD WGS tumor CPT0118510006 5da5e8dc-de54-4e99-9ebd-ebfd7c3929ec_wgs_gdc_realn.bam 78897402260 BAM harmonized CPTAC3 829a1129-86f7-411a-9b0c-9f0343d8f77a 7a26a9e53ea1f1f1457644af5fae25bf {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor"} -C3N-02142.WXS.A C3N-02142 LUAD WXS tissue_normal CPT0118530009 CPT0118530009.WholeExome.RP-1303.bam 36034856185 BAM aligned CPTAC3 ac2b5f0a-8f11-457c-ba3f-8046f3b65156 b9e1121dbe842bdc8420ac7e690e91f9 {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.WXS.A.hg38 C3N-02142 LUAD WXS tissue_normal CPT0118530009 98b6469b-5549-4697-9956-9be5af2ed296_wxs_gdc_realn.bam 48383502415 BAM harmonized CPTAC3 fc374d19-c4a2-4df1-821e-db59ad682a9a 3570adb673ec8e95180535d96afa5f71 {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02142.WXS.N C3N-02142 LUAD WXS blood_normal CPT0119750002 CPT0119750002.WholeExome.RP-1303.bam 31186140487 BAM aligned CPTAC3 cab9a8ee-c9bb-4b39-af45-3cbc00d3d981 d695d11cd8d4c08f409e1cc5c84e84ba {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal"} -C3N-02142.WXS.N.hg38 C3N-02142 LUAD WXS blood_normal CPT0119750002 4e49c64f-2a74-4408-921f-414b511e32af_wxs_gdc_realn.bam 41154793502 BAM harmonized CPTAC3 58028fd8-d6c1-46d0-911f-0d384d1f1fe0 60dcb36800bc5ace920a4861d59159b6 {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal"} -C3N-02142.WXS.T C3N-02142 LUAD WXS tumor CPT0118510006 CPT0118510006.WholeExome.RP-1303.bam 37233943721 BAM aligned CPTAC3 101765e3-1283-4a07-a1a2-c48305fca50e 6304951c6d8b93eb17bfa335ce61ba62 {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor"} -C3N-02142.WXS.T.hg38 C3N-02142 LUAD WXS tumor CPT0118510006 5da5e8dc-de54-4e99-9ebd-ebfd7c3929ec_wxs_gdc_realn.bam 50535162562 BAM harmonized CPTAC3 3897f8fb-cc51-45ff-87f9-a3c425e4d773 94587168825a0b427a8f6474014f3a3c {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor"} -C3N-02143.MethArray.Green.A C3N-02143 LUAD Methylation_Array tissue_normal CPT0213250006 203273630048_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 372d1766-f979-4b8b-9fe1-5c0b20394b87 8192b79867c408a5a939fba7490a89b3 {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.MethArray.Green.T C3N-02143 LUAD Methylation_Array tumor CPT0213230006 203561620091_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 2641be67-14fe-44ae-a390-0f8db78513aa 6b18f9d8beab451383216ddbd3c0b882 {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor"} -C3N-02143.MethArray.Red.A C3N-02143 LUAD Methylation_Array tissue_normal CPT0213250006 203273630048_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 81e003c8-3a90-4111-b795-91aafd09fa01 3b9473a3ab5992bbe630184e1678cb83 {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.MethArray.Red.T C3N-02143 LUAD Methylation_Array tumor CPT0213230006 203561620091_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 542a4636-4228-4d3a-9cbf-ec12ec321cce 141b20456d0de8c24ad5a5541bdc18dc {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor"} -C3N-02143.miRNA-Seq.A.hg38 C3N-02143 LUAD miRNA-Seq tissue_normal CPT0213250009 0618e73e-34d2-4b17-84ac-fe244f57d3d2_mirnaseq_gdc_realn.bam 249973840 BAM harmonized CPTAC3 c8dd0faf-16fa-48b9-9f00-6be322fe1799 f770e8ec4c09dd9f9ec59c2fbfbd7f29 {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.miRNA-Seq.S16_L005_R1.T C3N-02143 LUAD miRNA-Seq tumor CPT0213230009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGGCC_S16_L005_R1_001.unaln.bam 205547753 BAM S16_L005_R1 unaligned CPTAC3 ae04dd1f-33b0-48b6-9198-9816537bd38e 6b3d34b384c079bd9a685df139191174 {"aliquot_tag": "ALQ_b8c70e37", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02143.miRNA-Seq.S40_L007_R1.A C3N-02143 LUAD miRNA-Seq tissue_normal CPT0213250009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTAGAG_S40_L007_R1_001.unaln.bam 216176842 BAM S40_L007_R1 unaligned CPTAC3 89a72300-0da8-4a76-a67b-af5767c5d860 75bd8a69ba73502cf95da4adf1c1262f {"aliquot_tag": "ALQ_3787fb97", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.miRNA-Seq.T.hg38 C3N-02143 LUAD miRNA-Seq tumor CPT0213230009 815a1237-cc0a-4ddc-85fa-d5b4361ba214_mirnaseq_gdc_realn.bam 229185180 BAM harmonized CPTAC3 577f076b-dfb9-488d-af0e-e863d24c7a73 6b6e0107e781679ec37a7258af16b938 {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor"} -C3N-02143.RNA-Seq.chimeric.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.chimeric.gdc_realn.bam 42362471 BAM chimeric harmonized CPTAC3 b50e8dc2-7066-4287-9693-548a66e4833f d46484613c2230d6296cac9464844776 {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.RNA-Seq.chimeric.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.chimeric.gdc_realn.bam 25643779 BAM chimeric harmonized CPTAC3 89cc83ea-85a9-473c-9308-95316364f368 544a1eeb3261a989d712855eb7e6d298 {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor"} -C3N-02143.RNA-Seq.genomic.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.genomic.gdc_realn.bam 10063332985 BAM genomic harmonized CPTAC3 ac5bb987-3757-4f4d-9e77-a3e0dda6fb5e 4df6c0ac4758e9eeb2adb9a850779d4a {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.RNA-Seq.genomic.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.genomic.gdc_realn.bam 11512680211 BAM genomic harmonized CPTAC3 c353019a-3a23-4532-adc8-d3331d93fbd4 f741d65214dd446e525aed0b3be2f2cb {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor"} -C3N-02143.RNA-Seq.S12_L004_R1.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R1_001.fastq.gz 4520365189 FASTQ S12_L004_R1 unaligned CPTAC3 c1b5ef04-f445-4b9c-9502-79dc3e160578 ca259288a91720a4887bf48d8f08b522 {"aliquot_tag": "ALQ_3787fb97", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.RNA-Seq.S12_L004_R2.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R2_001.fastq.gz 4686036450 FASTQ S12_L004_R2 unaligned CPTAC3 5594487e-11bd-4e77-b933-5ce3d262567e 7cd68af51ae70a5e7e60c0b2365233d0 {"aliquot_tag": "ALQ_3787fb97", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.RNA-Seq.S7_L002_R1.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R1_001.fastq.gz 3542619521 FASTQ S7_L002_R1 unaligned CPTAC3 9a85fb5a-6bb5-43c2-8ee4-6d1e8139a080 6d56298cf7a79f7a5afbf5eb95c2349f {"aliquot_tag": "ALQ_b8c70e37", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02143.RNA-Seq.S7_L002_R2.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R2_001.fastq.gz 4064404369 FASTQ S7_L002_R2 unaligned CPTAC3 8f9ad4da-ea85-48cf-be30-ed1b51ebaefb 79a4ae00b0f41d3a3baf5ac28f8b1019 {"aliquot_tag": "ALQ_b8c70e37", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02143.RNA-Seq.transcriptome.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.transcriptome.gdc_realn.bam 10860429996 BAM transcriptome harmonized CPTAC3 f0eb1d49-b049-41d8-9e4c-437f77159ee2 af02f9060117f3fa8ef5612be664f430 {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.RNA-Seq.transcriptome.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.transcriptome.gdc_realn.bam 8593571291 BAM transcriptome harmonized CPTAC3 df2703e5-2296-4669-b617-783cb3bb69a3 8fc0a6b834234a1c5e554fba48c3e4f3 {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor"} -C3N-02143.WGS.N C3N-02143 LUAD WGS blood_normal CPT0213330002 CPT0213330002.WholeGenome.RP-1303.bam 57404187699 BAM aligned CPTAC3 4da6d60c-7d39-45f3-b787-a1d97495281f c7bb6b50b838bdc8c7e31cc99ef3b52d {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02143.WGS.N.hg38 C3N-02143 LUAD WGS blood_normal CPT0213330002 1fe77e66-a0db-4835-9ca3-811e8199e906_wgs_gdc_realn.bam 83482726053 BAM harmonized CPTAC3 56daee9a-072e-4060-91f4-88403cf18a5e 2af7a5a3a5c7a7c335cef50eb522667d {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02143.WGS.T C3N-02143 LUAD WGS tumor CPT0213230006 CPT0213230006.WholeGenome.RP-1303.bam 69465345124 BAM aligned CPTAC3 c417af26-46dd-427a-8cdd-5a489111cf4c c6517bdd41404e17858019c8563f315f {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor"} -C3N-02143.WGS.T.hg38 C3N-02143 LUAD WGS tumor CPT0213230006 bb8b8ae5-695c-471e-a645-c92387ff095e_wgs_gdc_realn.bam 101006269619 BAM harmonized CPTAC3 dabbfe22-9e01-4188-a89b-44e047d2d0bf c5f495839bbb64803822af9fa8be1985 {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor"} -C3N-02143.WXS.A C3N-02143 LUAD WXS tissue_normal CPT0213250006 CPT0213250006.WholeExome.RP-1303.bam 31881888064 BAM aligned CPTAC3 f43259b1-f53d-46e8-b8f6-790fc5fb8a8e 1574356ce86480d52838e3ccfc8ce52f {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.WXS.A.hg38 C3N-02143 LUAD WXS tissue_normal CPT0213250006 e81ad2e8-4887-42a6-81eb-a75bb132f21b_wxs_gdc_realn.bam 44103991553 BAM harmonized CPTAC3 726d53b7-205a-41bc-b42a-abe049ff7622 414370188d9be67cd44367ae83b2cc70 {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02143.WXS.N C3N-02143 LUAD WXS blood_normal CPT0213330002 CPT0213330002.WholeExome.RP-1303.bam 29572820014 BAM aligned CPTAC3 ef0cf61a-6186-4a17-a65c-6da54cd5d2ae d33f0cb08c6f070722fe84f2c11a6fbd {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02143.WXS.N.hg38 C3N-02143 LUAD WXS blood_normal CPT0213330002 1fe77e66-a0db-4835-9ca3-811e8199e906_wxs_gdc_realn.bam 40247475622 BAM harmonized CPTAC3 fa3e3c90-31ee-4bdd-9bb5-0528924387d7 55275608b00cf9c0a773bce4c2501583 {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02143.WXS.T C3N-02143 LUAD WXS tumor CPT0213230006 CPT0213230006.WholeExome.RP-1303.bam 27374825126 BAM aligned CPTAC3 0b47d843-8f44-411a-ab8d-bd7348885af5 c6134f2fba0e6f707af71e89a4e045dc {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor"} -C3N-02143.WXS.T.hg38 C3N-02143 LUAD WXS tumor CPT0213230006 bb8b8ae5-695c-471e-a645-c92387ff095e_wxs_gdc_realn.bam 37784256703 BAM harmonized CPTAC3 44e92b8c-5ffc-4dd4-9a73-f92fa239757e 31d8410526b7a4f3cb29d8704b9776c4 {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor"} -C3N-02144.MethArray.Green.A C3N-02144 LUAD Methylation_Array tissue_normal CPT0213430006 203219650006_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 e673f23e-2353-46ef-9add-3f33526442ac 7c82c514bc9f5153481ca0096eeb21b8 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.MethArray.Green.T C3N-02144 LUAD Methylation_Array tumor CPT0213400009 203219640095_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f4ee63a4-e943-444c-b552-5448a8895ae0 c9f949561f20e17a6229e2562ffc0636 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor"} -C3N-02144.MethArray.Red.A C3N-02144 LUAD Methylation_Array tissue_normal CPT0213430006 203219650006_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 dde10117-762b-41d1-8d55-c7f1feff5127 2df8ce4556c191213b2de5284c2189bb {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.MethArray.Red.T C3N-02144 LUAD Methylation_Array tumor CPT0213400009 203219640095_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 9975b9bf-2e6c-40a1-95af-0e21b63b9480 7ddf646ce8b8fac96450c830864343a7 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor"} -C3N-02144.miRNA-Seq.A.hg38 C3N-02144 LUAD miRNA-Seq tissue_normal CPT0213430009 3f357d5d-c2b0-4ade-b518-baa5487d573d_mirnaseq_gdc_realn.bam 284479151 BAM harmonized CPTAC3 7d1b0b4b-8a82-466e-a337-6e6448d0e10c 4c340d784ea6867ff65705892db08806 {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.miRNA-Seq.S34_L007_R1.T C3N-02144 LUAD miRNA-Seq tumor CPT0213400006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L007_R1_001.unaln.bam 157050378 BAM S34_L007_R1 unaligned CPTAC3 a7e6c91b-0be1-4932-be3a-af742b0de7b1 a0a244f616894d0336122c7cda5ea886 {"aliquot_tag": "ALQ_b9818a6b", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02144.miRNA-Seq.S6_L006_R1.A C3N-02144 LUAD miRNA-Seq tissue_normal CPT0213430009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L006_R1_001.unaln.bam 257014102 BAM S6_L006_R1 unaligned CPTAC3 f99c3b71-5854-407c-8b41-00ec71a67fde 9965d7e0239d85d3bf969e912a171e63 {"aliquot_tag": "ALQ_6e9eed2a", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.miRNA-Seq.T.hg38 C3N-02144 LUAD miRNA-Seq tumor CPT0213400006 ab2cad16-da9a-42cf-a735-c3792d89f43b_mirnaseq_gdc_realn.bam 169908057 BAM harmonized CPTAC3 3c01c951-0963-4730-a335-8d9b3e293c3a 8c3941591a7162ba62da836fe2afbeac {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor"} -C3N-02144.RNA-Seq.chimeric.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.chimeric.gdc_realn.bam 38255706 BAM chimeric harmonized CPTAC3 c5c254db-0f45-4c7c-8972-4b74a5eb8fd9 d5276d6958d82e2c4e3bfe5783378eb0 {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.RNA-Seq.chimeric.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.chimeric.gdc_realn.bam 44644956 BAM chimeric harmonized CPTAC3 358c5837-d72f-43ba-beef-2ac301a1ba06 1ff705ba6ba133bd35fdc9700a47c132 {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor"} -C3N-02144.RNA-Seq.genomic.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.genomic.gdc_realn.bam 8370147068 BAM genomic harmonized CPTAC3 8a8efd03-95f0-4843-a22d-0483ccc7eef4 594a2daef9c2dc785b572ffc2f98a9e4 {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.RNA-Seq.genomic.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.genomic.gdc_realn.bam 7694305409 BAM genomic harmonized CPTAC3 367ee2a9-4a24-45ec-831f-fbe24984b5c7 fc021668e15aacb2f087909fdb62f6c2 {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor"} -C3N-02144.RNA-Seq.S5_L002_R1.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3484027388 FASTQ S5_L002_R1 unaligned CPTAC3 5dea3bd7-2f8e-440c-810d-281806b7051b baf75b3fa82747f1d38a3f7c580b71e4 {"aliquot_tag": "ALQ_b9818a6b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02144.RNA-Seq.S5_L002_R2.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3766925002 FASTQ S5_L002_R2 unaligned CPTAC3 faa18593-2dff-4a1a-8423-a381f05e86fd 069a27d1e50c911e5a9460055485f5d9 {"aliquot_tag": "ALQ_b9818a6b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02144.RNA-Seq.S9_L003_R1.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3543017372 FASTQ S9_L003_R1 unaligned CPTAC3 39aef709-7338-42c2-9a5f-d5a7480416d2 565db775a5efff44092ac54fe2e020ff {"aliquot_tag": "ALQ_6e9eed2a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.RNA-Seq.S9_L003_R2.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3956840810 FASTQ S9_L003_R2 unaligned CPTAC3 6e6d7a13-f59a-4443-a4fa-86fdaf9fac26 cdb92cd57f00c7e9cc185aeccc30c5dd {"aliquot_tag": "ALQ_6e9eed2a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.RNA-Seq.transcriptome.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.transcriptome.gdc_realn.bam 9600167629 BAM transcriptome harmonized CPTAC3 f48e24c9-eda8-48bf-84b5-a0e59aeb9c7d 052330b39551ae0f82c1c0ccff7eac0f {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.RNA-Seq.transcriptome.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.transcriptome.gdc_realn.bam 9798540656 BAM transcriptome harmonized CPTAC3 877e89d0-7535-4177-acc7-dc8b67901e2a f921fa6571bf6578dbc634d6dd13e2cf {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor"} -C3N-02144.WGS.A C3N-02144 LUAD WGS tissue_normal CPT0213430006 CPT0213430006.WholeGenome.RP-1303.bam 60026135486 BAM aligned CPTAC3 9e3aec60-f247-4e12-a652-643315f2a456 cb4168ff0329612eb256aa076950aa7c {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.WGS.A.hg38 C3N-02144 LUAD WGS tissue_normal CPT0213430006 a12610f8-08ef-4ccf-8867-0b3e81a115cf_wgs_gdc_realn.bam 86874595021 BAM harmonized CPTAC3 c734e1f1-fd9e-4f86-9224-edc90e726f4d b3e7786a28355a94ee3383a23006cc19 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.WGS.N C3N-02144 LUAD WGS blood_normal CPT0213510002 CPT0213510002.WholeGenome.RP-1303.bam 58616982436 BAM aligned CPTAC3 4c1ffb4a-99be-4b2e-8940-cc59cee822e6 7fcd27635033273acb4ec494f7cbe9f8 {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal"} -C3N-02144.WGS.N.hg38 C3N-02144 LUAD WGS blood_normal CPT0213510002 10f4d713-27f7-4028-9cbe-7d7c13bc68f9_wgs_gdc_realn.bam 86324212139 BAM harmonized CPTAC3 fb9f6ff8-d5a4-44cf-9b5b-a28ff2fd545e c576c3f38623738aadb8bb23e24c84f4 {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal"} -C3N-02144.WGS.T C3N-02144 LUAD WGS tumor CPT0213400009 CPT0213400009.WholeGenome.RP-1303.bam 66354681910 BAM aligned CPTAC3 34df3749-ddf3-4867-b6b9-a4e919ddac5b 82a49b2e9dc886b024086d5e6d02fef2 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor"} -C3N-02144.WGS.T.hg38 C3N-02144 LUAD WGS tumor CPT0213400009 7295c9c9-2c79-4369-8516-8193188df19a_wgs_gdc_realn.bam 95795942041 BAM harmonized CPTAC3 f09475b5-0df7-44c9-bbb1-9e5148a0097e 594fc70c3dc773e4da4a23d8003f94f5 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor"} -C3N-02144.WXS.A C3N-02144 LUAD WXS tissue_normal CPT0213430006 CPT0213430006.WholeExome.RP-1303.bam 18661379879 BAM aligned CPTAC3 37f012e9-e8af-4522-8fbe-215311235411 0e8bd4355892a7e7227105b1827261e2 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.WXS.A.hg38 C3N-02144 LUAD WXS tissue_normal CPT0213430006 a12610f8-08ef-4ccf-8867-0b3e81a115cf_wxs_gdc_realn.bam 25998825089 BAM harmonized CPTAC3 b8d48d6d-0156-4128-ab0f-81645f7b9047 eb4b5490d49ac796047422cf62a55c51 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02144.WXS.N C3N-02144 LUAD WXS blood_normal CPT0213510002 CPT0213510002.WholeExome.RP-1303.bam 23436958534 BAM aligned CPTAC3 d435812d-c333-4fca-97a5-ff5ee45b1988 7cac3e93d46bd4de86c66062e2880f3e {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal"} -C3N-02144.WXS.N.hg38 C3N-02144 LUAD WXS blood_normal CPT0213510002 10f4d713-27f7-4028-9cbe-7d7c13bc68f9_wxs_gdc_realn.bam 31982259877 BAM harmonized CPTAC3 4bd492f5-2f8b-440e-ab46-f4fcc48454ab c0754fc4013c91c40cb0936a01d61ade {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal"} -C3N-02144.WXS.T C3N-02144 LUAD WXS tumor CPT0213400009 CPT0213400009.WholeExome.RP-1303.bam 22036477295 BAM aligned CPTAC3 eac40a7f-ff3c-4d3c-aeef-fcc2e776cf56 0c928d6e86844932420a981617fb5f9d {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor"} -C3N-02144.WXS.T.hg38 C3N-02144 LUAD WXS tumor CPT0213400009 7295c9c9-2c79-4369-8516-8193188df19a_wxs_gdc_realn.bam 30414668070 BAM harmonized CPTAC3 d91a24cf-44c0-4404-8274-42daf7c8de82 af61331316535079a1c10f8b88d247d0 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor"} -C3N-02145.MethArray.Green.A C3N-02145 LUAD Methylation_Array tissue_normal CPT0118600008 203027390105_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b7e7d881-87ef-41f0-9b86-0dca8cd5a09b 3d6f2f4f9832d8e908cd7bd24bd82e76 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.MethArray.Green.T C3N-02145 LUAD Methylation_Array tumor CPT0118570006 202234380094_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 fc001a4a-21d5-48ff-bafa-f6971b7f015a 6c085100ad9ad63aca284c9a5e4ede6a {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor"} -C3N-02145.MethArray.Red.A C3N-02145 LUAD Methylation_Array tissue_normal CPT0118600008 203027390105_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 03146dfc-541d-46c2-aa65-419d859895ae 735f992d2e43e0857cfd832eafdd8ae7 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.MethArray.Red.T C3N-02145 LUAD Methylation_Array tumor CPT0118570006 202234380094_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 46a39240-fc50-4e6d-b072-329f44ea4005 a588115df1910fc3450dc002200be8fc {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor"} -C3N-02145.miRNA-Seq.A.hg38 C3N-02145 LUAD miRNA-Seq tissue_normal CPT0118600006 64131159-b16b-4bf3-a478-1886f4f5c7a9_mirnaseq_gdc_realn.bam 271387133 BAM harmonized CPTAC3 e9c9948b-ad8a-4fec-96fc-db73b064ef8c fefbf726260d7ed782627ae7b450a1bd {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.miRNA-Seq.S17_L004_R1.T C3N-02145 LUAD miRNA-Seq tumor CPT0118570009 181119_UNC31-K00269_0165_AH27WCBBXY_GACGAC_S17_L004_R1_001.unaln.bam 276742128 BAM S17_L004_R1 unaligned CPTAC3 1def2f41-b387-4f61-b593-285bbba89d43 2e818129f28249cbe3d34ceccfa4026e {"aliquot_tag": "ALQ_6bc8f070", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02145.miRNA-Seq.S42_L005_R1.A C3N-02145 LUAD miRNA-Seq tissue_normal CPT0118600006 181108_UNC31-K00269_0162_AH255GBBXY_GTCCGC_S42_L005_R1_001.unaln.bam 246834425 BAM S42_L005_R1 unaligned CPTAC3 184ce297-4734-4818-aa52-11d548845b1f f8d007d8f850b0fedc4eed17dfb82b8e {"aliquot_tag": "ALQ_cfc3435f", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.miRNA-Seq.T.hg38 C3N-02145 LUAD miRNA-Seq tumor CPT0118570009 e6f04a8d-fe6e-4fdf-b126-4e5ac2416d3e_mirnaseq_gdc_realn.bam 299205243 BAM harmonized CPTAC3 c21ea4eb-9d42-4e7b-aee3-9c817416a8a8 f5cda125a7f9fea9b191a8c274eee524 {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor"} -C3N-02145.RNA-Seq.chimeric.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.chimeric.gdc_realn.bam 132927427 BAM chimeric harmonized CPTAC3 1e9b9880-7fa9-41bc-b714-8012b6d9fdc1 ed6c4c1efa8dca058545958777098ba1 {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.RNA-Seq.chimeric.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.chimeric.gdc_realn.bam 142856390 BAM chimeric harmonized CPTAC3 9c319a4b-e6d5-4bb7-bbcf-5bb5fc70e9de 0e9743810977e869b5ae79339646bbf6 {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor"} -C3N-02145.RNA-Seq.genomic.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.genomic.gdc_realn.bam 8367415124 BAM genomic harmonized CPTAC3 9bfae709-1420-4f7d-84fa-794972ddd474 ef0ff143688eb80274d706d76f391eee {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.RNA-Seq.genomic.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.genomic.gdc_realn.bam 10460715105 BAM genomic harmonized CPTAC3 30fe7a9f-55b5-4f3b-95ea-fa2ad5ca2054 64686f7b9de36cdbd387f23c974c061f {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor"} -C3N-02145.RNA-Seq.S1_L007_R1.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4560885545 FASTQ S1_L007_R1 unaligned CPTAC3 560ee59e-a8eb-4b33-a3c4-e80c56e012f3 569fd6cdca5de14c2eda92757c1bc00a {"aliquot_tag": "ALQ_6bc8f070", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02145.RNA-Seq.S1_L007_R2.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4997975061 FASTQ S1_L007_R2 unaligned CPTAC3 67bb9f61-dd97-4785-bb1a-8f046fe57cae 80127fd0425ddc8daa859a8e926999ca {"aliquot_tag": "ALQ_6bc8f070", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02145.RNA-Seq.S22_L007_R1.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R1_001.fastq.gz 4007829372 FASTQ S22_L007_R1 unaligned CPTAC3 849ef78b-5cda-4554-a758-d07240117226 39153f606c5c6e562d9adc658e5c8913 {"aliquot_tag": "ALQ_cfc3435f", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.RNA-Seq.S22_L007_R2.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R2_001.fastq.gz 4151806539 FASTQ S22_L007_R2 unaligned CPTAC3 c2cf65f7-c9b9-4452-85e9-c2199358cae2 5227b35b6915a792ddb6c6789f5b5f33 {"aliquot_tag": "ALQ_cfc3435f", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.RNA-Seq.transcriptome.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.transcriptome.gdc_realn.bam 10503889716 BAM transcriptome harmonized CPTAC3 58a9dd9d-4095-433d-a916-9630b6ff9a56 62fa376b17ba52483ddedb829ca48a25 {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.RNA-Seq.transcriptome.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.transcriptome.gdc_realn.bam 11829743851 BAM transcriptome harmonized CPTAC3 ea66a677-de0e-4403-86be-0ae5402f67f1 4b4433c7daf58f939bbb480a52528968 {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor"} -C3N-02145.WGS.A C3N-02145 LUAD WGS tissue_normal CPT0118600008 CPT0118600008.WholeGenome.RP-1303.bam 60454307716 BAM aligned CPTAC3 1c342b77-1ccd-47d6-9d5e-c9bb57687a35 e69a71e108e9039ed4685e2cc4c50081 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.WGS.A.hg38 C3N-02145 LUAD WGS tissue_normal CPT0118600008 132717f2-7e89-446b-a32c-6d186aeabd07_wgs_gdc_realn.bam 90402520354 BAM harmonized CPTAC3 763f4549-1e94-436b-9bc5-74bdcb1d3caf 0b874fb70095865704a6de41740937fa {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.WGS.N C3N-02145 LUAD WGS blood_normal CPT0119810002 CPT0119810002.WholeGenome.RP-1303.bam 58499340321 BAM aligned CPTAC3 84ef61c3-73b1-4123-b1ba-7708de4171cb 16243c3dcdf5e6b2d1e399bc865db523 {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal"} -C3N-02145.WGS.N.hg38 C3N-02145 LUAD WGS blood_normal CPT0119810002 62430f39-b7bd-4c7a-8ff1-515876e9a2c0_wgs_gdc_realn.bam 87369376161 BAM harmonized CPTAC3 ee798bc4-720d-4367-ac5c-9e22ac0b1d0b 8fc828d1c75bd47dd20fff493c56c76e {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal"} -C3N-02145.WGS.T C3N-02145 LUAD WGS tumor CPT0118570006 CPT0118570006.WholeGenome.RP-1303.bam 64806283770 BAM aligned CPTAC3 28e03324-ca8c-46c4-b53c-6c0f820a1ad9 0d97779855be5163f73fa39705a340ce {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor"} -C3N-02145.WGS.T.hg38 C3N-02145 LUAD WGS tumor CPT0118570006 3c404945-7719-486d-9cdc-b47d6aa903c4_wgs_gdc_realn.bam 94700020338 BAM harmonized CPTAC3 fe5030c1-a4a0-432c-b6c1-c38116b89a64 ff6e6edd444b5abf9bcebf8b04cffdc1 {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor"} -C3N-02145.WXS.A C3N-02145 LUAD WXS tissue_normal CPT0118600008 CPT0118600008.WholeExome.RP-1303.bam 31883138286 BAM aligned CPTAC3 66abf167-b3a1-4e79-86b3-c7b4008074cb 6d70578de6f979567d8b7d822a22ddc4 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.WXS.A.hg38 C3N-02145 LUAD WXS tissue_normal CPT0118600008 132717f2-7e89-446b-a32c-6d186aeabd07_wxs_gdc_realn.bam 43890705503 BAM harmonized CPTAC3 804c6f26-d695-417e-b423-87f56ccabbbe b0703d366dab20d7b46e12f26687d4f2 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02145.WXS.N C3N-02145 LUAD WXS blood_normal CPT0119810002 CPT0119810002.WholeExome.RP-1303.bam 51678363808 BAM aligned CPTAC3 c4831146-1ff1-4977-b1af-9807cc203069 fbf7d89626a8a8e43b1d455e9259c1be {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal"} -C3N-02145.WXS.N.hg38 C3N-02145 LUAD WXS blood_normal CPT0119810002 62430f39-b7bd-4c7a-8ff1-515876e9a2c0_wxs_gdc_realn.bam 68384859286 BAM harmonized CPTAC3 08f29362-1f2b-4678-839d-cebfa79689a7 f32418f891aaff7c557b1948d3f366cf {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal"} -C3N-02145.WXS.T C3N-02145 LUAD WXS tumor CPT0118570006 CPT0118570006.WholeExome.RP-1303.bam 34515481428 BAM aligned CPTAC3 f5ab4d45-7b4e-440c-8c65-ffd735cf945c ccb545cc12a37db9d1af1eb6337960f0 {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor"} -C3N-02145.WXS.T.hg38 C3N-02145 LUAD WXS tumor CPT0118570006 3c404945-7719-486d-9cdc-b47d6aa903c4_wxs_gdc_realn.bam 47759048627 BAM harmonized CPTAC3 cd82f96e-95e3-4cb7-84f5-680e9badc216 24bf349e0cfca5ec0134dda323ff4487 {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.MethArray.Green.A C3N-02146 LUAD Methylation_Array tissue_normal CPT0213610006 203220070100_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 622c35fc-5235-4d4a-a3d1-8defb7b8d0c7 af88067ac0232e9e32af52980bba4701 {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.MethArray.Green.T C3N-02146 LUAD Methylation_Array tumor CPT0213600009 203219670106_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 e5d2bed4-9c39-4c3b-bc33-9bcb8a21793a 4c9668ca7552f535a82f29f3854f9ba5 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.MethArray.Red.A C3N-02146 LUAD Methylation_Array tissue_normal CPT0213610006 203220070100_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 27b66423-65aa-4f34-b427-a07344635713 9e909b72d31f5147bd62c7b6256cd919 {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.MethArray.Red.T C3N-02146 LUAD Methylation_Array tumor CPT0213600009 203219670106_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 a59f1698-2b5d-4a2c-840c-32da25d5d41b 205649b2b4b41325b1bc1d1952076e17 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.miRNA-Seq.A.hg38 C3N-02146 LUAD miRNA-Seq tissue_normal CPT0213610009 da7a2f39-e64c-4fbb-890a-f2376b19546e_mirnaseq_gdc_realn.bam 302400847 BAM harmonized CPTAC3 58b43116-eef1-46bf-b969-6f6c067611ca 6219c4a65b2a5e431d3d2ee3e8f7febf {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.miRNA-Seq.S17_L004_R1.A C3N-02146 LUAD miRNA-Seq tissue_normal CPT0213610009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L004_R1_001.unaln.bam 268568864 BAM S17_L004_R1 unaligned CPTAC3 a9270b95-37ef-462f-88bc-e27759d34ef7 99f23679d4aba22ea7d912800ae4e611 {"aliquot_tag": "ALQ_59961f41", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.miRNA-Seq.S29_L007_R1.T C3N-02146 LUAD miRNA-Seq tumor CPT0213600006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L007_R1_001.unaln.bam 212464348 BAM S29_L007_R1 unaligned CPTAC3 a7ff1a54-1213-4d89-9fb4-17811df07cac d54dabea2c392edf391400162b6c1d16 {"aliquot_tag": "ALQ_f4492b60", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.miRNA-Seq.T.hg38 C3N-02146 LUAD miRNA-Seq tumor CPT0213600006 b11aff8f-8275-4e00-bf29-0afcd85a2efe_mirnaseq_gdc_realn.bam 229393465 BAM harmonized CPTAC3 030a362b-9c18-467a-a0d7-c24489b1a581 c9871d24501618a030add714afb4a047 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor"} -C3N-02146.RNA-Seq.chimeric.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.chimeric.gdc_realn.bam 40885283 BAM chimeric harmonized CPTAC3 d8bc1b3e-ec41-44b0-bc59-3c99402b9f95 7d5333ccbba7dd9d530f48dc42f271cc {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.RNA-Seq.chimeric.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.chimeric.gdc_realn.bam 50710805 BAM chimeric harmonized CPTAC3 5593ef8f-1d2c-4305-9fc9-7b6ea6d52704 d5a6956953bc332875e681a09afc9171 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor"} -C3N-02146.RNA-Seq.genomic.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.genomic.gdc_realn.bam 9978139725 BAM genomic harmonized CPTAC3 ff1f7439-fb2e-4d1d-876d-9f84f14aaf4b d5646b2ee504e7d687970f2753d3aa7b {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.RNA-Seq.genomic.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.genomic.gdc_realn.bam 9508193362 BAM genomic harmonized CPTAC3 72c2c989-022f-4bef-a6b9-d78382137efa 5157557512cf49c3d7cc08616c208001 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor"} -C3N-02146.RNA-Seq.S7_L002_R1.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R1_001.fastq.gz 4613353599 FASTQ S7_L002_R1 unaligned CPTAC3 9824d156-b308-47e5-819f-b8eef22edab5 259b460bf941125ad9735c14727bbd0f {"aliquot_tag": "ALQ_59961f41", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.RNA-Seq.S7_L002_R2.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R2_001.fastq.gz 4686371419 FASTQ S7_L002_R2 unaligned CPTAC3 9bdcac28-c86c-4ff3-9711-6c8a95f88051 b5bc8bf421ea544d69ce1f5c58a04774 {"aliquot_tag": "ALQ_59961f41", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.RNA-Seq.S8_L008_R1.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R1_001.fastq.gz 3957059737 FASTQ S8_L008_R1 unaligned CPTAC3 5d4d4ccc-ce37-4363-84a2-6558a2c7b796 a0e869ad38becd4ba3f7b1f95deeac11 {"aliquot_tag": "ALQ_f4492b60", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.RNA-Seq.S8_L008_R2.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R2_001.fastq.gz 4386323282 FASTQ S8_L008_R2 unaligned CPTAC3 5465f0fb-3df4-47c6-8690-20a5f71e9b0a 57036851d10f83f21e0aa39f2900d5d0 {"aliquot_tag": "ALQ_f4492b60", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02146.RNA-Seq.transcriptome.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.transcriptome.gdc_realn.bam 11442920258 BAM transcriptome harmonized CPTAC3 8fe0ee27-de8a-4a0e-8632-b09d5189ee7e c55674a3c1de250be63b22b39ed759e1 {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.RNA-Seq.transcriptome.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.transcriptome.gdc_realn.bam 8873871717 BAM transcriptome harmonized CPTAC3 4b49fa4c-f2c9-4f00-8b79-9c6914719807 1f96dd31a3d6e3e996da62fb48a15213 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor"} -C3N-02146.WGS.A C3N-02146 LUAD WGS tissue_normal CPT0213610006 CPT0213610006.WholeGenome.RP-1303.bam 58227869637 BAM aligned CPTAC3 c3a1d2b7-d344-4c44-8b33-f7f2bc3bcdcb 36d10cc8b9094937ebca549549419dec {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.WGS.A.hg38 C3N-02146 LUAD WGS tissue_normal CPT0213610006 646adfc3-9a79-48bd-b65d-b7e3b44901e7_wgs_gdc_realn.bam 85979883907 BAM harmonized CPTAC3 69552701-8340-477e-b652-15fad0989430 ccec0d66301ace893300f4f2cf0e9d56 {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.WGS.N C3N-02146 LUAD WGS blood_normal CPT0213690002 CPT0213690002.WholeGenome.RP-1303.bam 57302327942 BAM aligned CPTAC3 56af6184-5441-4670-9332-86261208b195 4534b173867321363d963b0294de7182 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal"} -C3N-02146.WGS.N.hg38 C3N-02146 LUAD WGS blood_normal CPT0213690002 ce7fd37a-df61-460a-b503-62afc4e68aed_wgs_gdc_realn.bam 84181065921 BAM harmonized CPTAC3 7ae29f78-2743-4f32-b986-7b3e02e95c9c c40bed34232ac978c2cea6fcd21317d5 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal"} -C3N-02146.WGS.T C3N-02146 LUAD WGS tumor CPT0213600009 CPT0213600009.WholeGenome.RP-1303.bam 75139040982 BAM aligned CPTAC3 369ef04b-ae8c-489b-b367-039910cb9165 fd15b0a62bf29b1a905d21f60c50f72d {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.WGS.T.hg38 C3N-02146 LUAD WGS tumor CPT0213600009 934812b3-c6a6-49a9-bd08-1c3d5fce1b5c_wgs_gdc_realn.bam 107563708907 BAM harmonized CPTAC3 f39bb257-ede9-4fa1-b17b-b26470bf9e75 a30f61158649d86cc634506138613af5 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.WXS.A C3N-02146 LUAD WXS tissue_normal CPT0213610006 CPT0213610006.WholeExome.RP-1303.bam 24562726540 BAM aligned CPTAC3 9ad26bb5-4813-4dc4-b889-355912991579 373f2e9bc4807047a89c857de759a0fe {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.WXS.A.hg38 C3N-02146 LUAD WXS tissue_normal CPT0213610006 646adfc3-9a79-48bd-b65d-b7e3b44901e7_wxs_gdc_realn.bam 34405378315 BAM harmonized CPTAC3 edf762ae-0e65-4e86-a2b0-f2a654ee0ec7 69aa1d3a1aaa80f0e0c6146a81b6526b {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02146.WXS.N C3N-02146 LUAD WXS blood_normal CPT0213690002 CPT0213690002.WholeExome.RP-1303.bam 30538664092 BAM aligned CPTAC3 98718567-706d-4aed-a3d2-0a6a8725a884 7dd19188d2bb67a3e9446891109771a2 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal"} -C3N-02146.WXS.N.hg38 C3N-02146 LUAD WXS blood_normal CPT0213690002 ce7fd37a-df61-460a-b503-62afc4e68aed_wxs_gdc_realn.bam 41321630954 BAM harmonized CPTAC3 4cca5445-c281-4e6e-8d38-558b87dcf955 7aa04cb100c171f1b9c47d1d63603fe5 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal"} -C3N-02146.WXS.T C3N-02146 LUAD WXS tumor CPT0213600009 CPT0213600009.WholeExome.RP-1303.bam 30211451138 BAM aligned CPTAC3 ed5b1a19-7e87-4923-8799-5c94f43ecbcb 2da11e953040d76c05d21a32702d1e9a {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor"} -C3N-02146.WXS.T.hg38 C3N-02146 LUAD WXS tumor CPT0213600009 934812b3-c6a6-49a9-bd08-1c3d5fce1b5c_wxs_gdc_realn.bam 41921689256 BAM harmonized CPTAC3 ba8734f5-13d2-4bb2-8fb1-4ab756fa10fd b1e418b15871e20675c137dee420e6b8 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor"} -C3N-02149.MethArray.Green.A C3N-02149 LUAD Methylation_Array tissue_normal CPT0118650009 203027390118_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fb9a7d1c-1728-49d2-9d18-c525247e7fa8 12fe557dbd8669f3dbff6f4509495a01 {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.MethArray.Green.T C3N-02149 LUAD Methylation_Array tumor CPT0118620006 202234370095_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b1cd2ae2-2687-4ac3-b6bd-45248670144c 40397aaf00ee240fe2ed8b276733069c {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor"} -C3N-02149.MethArray.Red.A C3N-02149 LUAD Methylation_Array tissue_normal CPT0118650009 203027390118_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 359d4c9c-5820-4779-8d95-06d33d2ad996 9200f24897c3bb1baec51cd76d8df7ec {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.MethArray.Red.T C3N-02149 LUAD Methylation_Array tumor CPT0118620006 202234370095_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 1c1bcb59-dfeb-4bd3-bc8d-baf2c990efc2 8fd0b52768c93dbfd964f30b33016a13 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor"} -C3N-02149.miRNA-Seq.A.hg38 C3N-02149 LUAD miRNA-Seq tissue_normal CPT0118650006 45bdbc97-75c5-4b52-bda7-3bac221e127e_mirnaseq_gdc_realn.bam 249635996 BAM harmonized CPTAC3 6f4d000d-7778-4d3d-a924-e6145314bc8e fd8f02294ddfbd5d9ba256d685d0fdd2 {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.miRNA-Seq.S18_L004_R1.T C3N-02149 LUAD miRNA-Seq tumor CPT0118620009 181119_UNC31-K00269_0165_AH27WCBBXY_TAATCG_S18_L004_R1_001.unaln.bam 195457399 BAM S18_L004_R1 unaligned CPTAC3 63f416e9-7261-47da-9f6f-0a298c7992d4 5f23dcf4874af2b6b4a5b394d801074b {"aliquot_tag": "ALQ_25bc0dae", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02149.miRNA-Seq.S43_L006_R1.A C3N-02149 LUAD miRNA-Seq tissue_normal CPT0118650006 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L006_R1_001.unaln.bam 227431174 BAM S43_L006_R1 unaligned CPTAC3 221a95fa-afa8-4542-b2b7-b3bcd27c558d 11f003c351c5cbc00df7b541e2d20aa4 {"aliquot_tag": "ALQ_723cc2f", "sample": "S43", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.miRNA-Seq.T.hg38 C3N-02149 LUAD miRNA-Seq tumor CPT0118620009 00766340-ae8f-4cb4-8473-9fe435c6e671_mirnaseq_gdc_realn.bam 214124021 BAM harmonized CPTAC3 cf4c500c-1055-4ee9-a36d-52c2a9a7eae3 07be32f04ced2295ef158df47ffdff29 {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor"} -C3N-02149.RNA-Seq.chimeric.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.chimeric.gdc_realn.bam 141987760 BAM chimeric harmonized CPTAC3 a01a6717-2b8b-41c8-9768-86563fa00f21 00a6e076c6cd8a9f63ca41ec3b28d0ce {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.RNA-Seq.chimeric.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.chimeric.gdc_realn.bam 112408969 BAM chimeric harmonized CPTAC3 14228ccd-572e-4eb2-a3ab-e067b7b7b5e8 46f387a7d7be181cd8e5ea5a6a4a8823 {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor"} -C3N-02149.RNA-Seq.genomic.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.genomic.gdc_realn.bam 9108971482 BAM genomic harmonized CPTAC3 65610ae5-480c-4cec-a39d-b03d29c2ffd4 48899e2428344c6bcebb2426e4ba2e9b {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.RNA-Seq.genomic.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.genomic.gdc_realn.bam 8587413235 BAM genomic harmonized CPTAC3 2e3fcf51-0d25-4e50-86fb-9c21d965e572 1c7a5b296ec84d7ac03bcfb8cc707d1b {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor"} -C3N-02149.RNA-Seq.S13_L004_R1.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4366895728 FASTQ S13_L004_R1 unaligned CPTAC3 12929715-f6fc-463c-9c52-14611d4204e2 2d5ee10fe9e9719d39fdb5fc15d4eb57 {"aliquot_tag": "ALQ_723cc2f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.RNA-Seq.S13_L004_R2.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4871950739 FASTQ S13_L004_R2 unaligned CPTAC3 bebb0111-48c4-448d-ac99-487b825baf58 cd707574ef86c518f50c2bc74d28b68c {"aliquot_tag": "ALQ_723cc2f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.RNA-Seq.S4_L007_R1.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3631172744 FASTQ S4_L007_R1 unaligned CPTAC3 fa21ff7c-cb3a-4bcd-ac39-b9a69f09f865 88e272b58da7d8e0bb146da619a0cdd2 {"aliquot_tag": "ALQ_25bc0dae", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02149.RNA-Seq.S4_L007_R2.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 4023468920 FASTQ S4_L007_R2 unaligned CPTAC3 d6193ba0-a0b7-482a-aa76-ab2a9656107b d0c228b6a5ec820825356c19a2c22f4e {"aliquot_tag": "ALQ_25bc0dae", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02149.RNA-Seq.transcriptome.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.transcriptome.gdc_realn.bam 12344189659 BAM transcriptome harmonized CPTAC3 be34e592-f8fb-4b3b-bc5e-e31ee6d602f2 009f7bf42b47ee74b89380b0cb1a634c {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.RNA-Seq.transcriptome.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.transcriptome.gdc_realn.bam 9837903706 BAM transcriptome harmonized CPTAC3 eeec4588-c87d-4821-b2ea-08cc94342c78 6f02edc45ad1dfcfbf4d095b71ebeffe {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor"} -C3N-02149.WGS.A C3N-02149 LUAD WGS tissue_normal CPT0118650009 CPT0118650009.WholeGenome.RP-1303.bam 63484893208 BAM aligned CPTAC3 6bf5cb45-a82b-4c7f-9bd6-3b08ccf8798e 41761a34cb82ae82b53bcba1f06620a9 {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.WGS.A.hg38 C3N-02149 LUAD WGS tissue_normal CPT0118650009 85bee5d7-ca2c-4eab-b4c7-672afbd8ef7e_wgs_gdc_realn.bam 92537021356 BAM harmonized CPTAC3 bf2528de-94be-4f54-ae91-90c01ed456db ae9ac8a0bde72bb4a14599f9395209e7 {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.WGS.N C3N-02149 LUAD WGS blood_normal CPT0119870002 CPT0119870002.WholeGenome.RP-1303.bam 71936192505 BAM aligned CPTAC3 d38a72d2-ffc3-4d00-96ae-7770434ae78d 88c15521cf2df117cffd9145fa419f69 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal"} -C3N-02149.WGS.N.hg38 C3N-02149 LUAD WGS blood_normal CPT0119870002 a53c962e-f431-4d44-88cd-4e8e3266df3f_wgs_gdc_realn.bam 106554081386 BAM harmonized CPTAC3 126eff70-4fdd-4cc0-87bd-c027c1aa6efa 263131442246d77f81a90bb5b70cc371 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal"} -C3N-02149.WGS.T C3N-02149 LUAD WGS tumor CPT0118620006 CPT0118620006.WholeGenome.RP-1303.bam 68202627982 BAM aligned CPTAC3 bbe24f4e-04a9-43b7-ae6f-b126f1a7f438 5265d535a6f890090bcfada857f9d03f {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor"} -C3N-02149.WGS.T.hg38 C3N-02149 LUAD WGS tumor CPT0118620006 b9125a98-59f8-4952-b25f-ffeba3e29a57_wgs_gdc_realn.bam 98665304512 BAM harmonized CPTAC3 47259525-439a-451c-9928-edbfdcb64b67 37e87afafbc1d527fe5c724452b1fed0 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor"} -C3N-02149.WXS.A C3N-02149 LUAD WXS tissue_normal CPT0118650009 CPT0118650009.WholeExome.RP-1303.bam 35251044048 BAM aligned CPTAC3 e8489660-a732-47aa-a17e-cc5e6f3b312f 20210482759c0f8fd74c120842cc585d {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.WXS.A.hg38 C3N-02149 LUAD WXS tissue_normal CPT0118650009 85bee5d7-ca2c-4eab-b4c7-672afbd8ef7e_wxs_gdc_realn.bam 47384250047 BAM harmonized CPTAC3 b464876e-29f1-4830-b7d8-e9070f976551 11fab6fcf22c4b15d3d59bf2f4dc25bb {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02149.WXS.N C3N-02149 LUAD WXS blood_normal CPT0119870002 CPT0119870002.WholeExome.RP-1303.bam 45265816231 BAM aligned CPTAC3 40c54124-c3df-46b5-80c1-fe2094acc311 a6cf4f59af01881ebf06dd95c98193e5 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal"} -C3N-02149.WXS.N.hg38 C3N-02149 LUAD WXS blood_normal CPT0119870002 a53c962e-f431-4d44-88cd-4e8e3266df3f_wxs_gdc_realn.bam 60509033291 BAM harmonized CPTAC3 5f9fee87-fcca-4efd-8730-ff6038ce26aa d544a292e802425b55fdee4f5ecca916 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal"} -C3N-02149.WXS.T C3N-02149 LUAD WXS tumor CPT0118620006 CPT0118620006.WholeExome.RP-1303.bam 36414207865 BAM aligned CPTAC3 24ce04e7-4214-4ea4-a895-3306afa22c1f fdd0f784012839dc62797fdd489a5420 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor"} -C3N-02149.WXS.T.hg38 C3N-02149 LUAD WXS tumor CPT0118620006 b9125a98-59f8-4952-b25f-ffeba3e29a57_wxs_gdc_realn.bam 48677763794 BAM harmonized CPTAC3 b7a376a3-c0b0-4f66-bd65-6c6b2a369cfc 6a4815809c9169e7b75c27b32369b5f3 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor"} -C3N-02150.MethArray.Green.A C3N-02150 LUAD Methylation_Array tissue_normal CPT0118710009 203027390118_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8c2925c6-e1d0-40d2-8833-92c593885e26 d9293cf7a21f4a46ba81cd9ac5f61f89 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.MethArray.Green.T C3N-02150 LUAD Methylation_Array tumor CPT0118700006 202234360025_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fa2627e5-f063-4fe2-9cc2-1c4a890cb3d0 d9c9ad26cc594aee31b68b483964c782 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor"} -C3N-02150.MethArray.Red.A C3N-02150 LUAD Methylation_Array tissue_normal CPT0118710009 203027390118_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f62d82b4-8856-42fd-a3ba-cd3d4c407724 0880e2d384b44782d3281c9bf5fa2a07 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.MethArray.Red.T C3N-02150 LUAD Methylation_Array tumor CPT0118700006 202234360025_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 0c61c31b-b267-42c4-81f0-d4510f065465 9cbfd3ceb29fff97cc9c77038d81ae1b {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor"} -C3N-02150.miRNA-Seq.A.hg38 C3N-02150 LUAD miRNA-Seq tissue_normal CPT0118710006 0d27d530-2d19-4927-baf1-209c14caeaea_mirnaseq_gdc_realn.bam 230714513 BAM harmonized CPTAC3 a390c88f-65ec-497e-82cd-44d819f12c2a a4bdcea5ef33cfdd7a05e3507ce5baf5 {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.miRNA-Seq.S19_L004_R1.T C3N-02150 LUAD miRNA-Seq tumor CPT0118700009 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L004_R1_001.unaln.bam 252409691 BAM S19_L004_R1 unaligned CPTAC3 4c39c0e7-4a5a-4b23-9d09-377b77bcbbc3 c8f116479c59d2755d7568cb0ee65b1c {"aliquot_tag": "ALQ_94208d6b", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02150.miRNA-Seq.S44_L006_R1.A C3N-02150 LUAD miRNA-Seq tissue_normal CPT0118710006 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L006_R1_001.unaln.bam 208658454 BAM S44_L006_R1 unaligned CPTAC3 48189d12-26b8-4c2a-a2c8-ab33842e0373 6538f43ffc7a5a16299588adb4863b7c {"aliquot_tag": "ALQ_39ffb94a", "sample": "S44", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.miRNA-Seq.T.hg38 C3N-02150 LUAD miRNA-Seq tumor CPT0118700009 f873c66e-5aaf-4ff5-862a-62b09ce276e6_mirnaseq_gdc_realn.bam 270204599 BAM harmonized CPTAC3 7051a252-d974-406c-af88-a6cac63fc873 b69e38258b8dc1d4ba79e0801eb56a7e {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor"} -C3N-02150.RNA-Seq.chimeric.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.chimeric.gdc_realn.bam 66174492 BAM chimeric harmonized CPTAC3 58a9f5ed-7c1f-4237-8755-a6030a7e4f72 8ac8c496124fa72aa332c0a5fb62c43d {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.RNA-Seq.chimeric.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.chimeric.gdc_realn.bam 126678513 BAM chimeric harmonized CPTAC3 aaa5969e-f85d-44b7-b9d9-68c3c3ec6eb7 f54d0925122b4d413c43208f06a41a16 {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor"} -C3N-02150.RNA-Seq.genomic.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.genomic.gdc_realn.bam 7877200058 BAM genomic harmonized CPTAC3 f6b9d8d0-2da9-43c4-9536-d46a3a7ccd53 2aabf91638c551b36f984e66e9dee43f {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.RNA-Seq.genomic.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.genomic.gdc_realn.bam 8469154808 BAM genomic harmonized CPTAC3 2a646780-a2f1-49c6-9210-8fb53927707b d808119858ee8ac1fee8157c3121aeb8 {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor"} -C3N-02150.RNA-Seq.S22_L006_R1.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3841420216 FASTQ S22_L006_R1 unaligned CPTAC3 39b210fe-d49c-454e-acc2-5136184d18a4 e98c3f598640cd1cc980ff8bfe03e276 {"aliquot_tag": "ALQ_94208d6b", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02150.RNA-Seq.S22_L006_R2.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4336286051 FASTQ S22_L006_R2 unaligned CPTAC3 7e4d06e2-8d42-488d-aa53-a9801189552f 81b179c127d8f526893eb9a56a7f6e29 {"aliquot_tag": "ALQ_94208d6b", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02150.RNA-Seq.S34_L006_R1.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R1_001.fastq.gz 4211755416 FASTQ S34_L006_R1 unaligned CPTAC3 022035d9-42be-4313-b98b-f2645f051afb b659c5bdd51cb5ac237c2c9f61b92acd {"aliquot_tag": "ALQ_39ffb94a", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.RNA-Seq.S34_L006_R2.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R2_001.fastq.gz 4576581981 FASTQ S34_L006_R2 unaligned CPTAC3 150222e9-64f1-4230-b072-c8d7182a6660 b912c0a7fc7d809b2d375ab934bbc7d5 {"aliquot_tag": "ALQ_39ffb94a", "sample": "S34", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.RNA-Seq.transcriptome.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.transcriptome.gdc_realn.bam 10808719427 BAM transcriptome harmonized CPTAC3 a2806193-43f5-4f3a-af4e-4c1e0671a3b4 58f0187a075742ece35f6852d50d71cd {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.RNA-Seq.transcriptome.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.transcriptome.gdc_realn.bam 11573924570 BAM transcriptome harmonized CPTAC3 d2c73c31-5bfd-4de2-aefc-6cc4dd22759d f98b20d6b60212889fcf3ef33c9b4e9d {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor"} -C3N-02150.WGS.A C3N-02150 LUAD WGS tissue_normal CPT0118710009 CPT0118710009.WholeGenome.RP-1303.bam 72269981785 BAM aligned CPTAC3 2b55fcb0-32a5-48e0-9063-68eb1c8821c5 571734d29766f8b1e960b50bbbd6f38e {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.WGS.A.hg38 C3N-02150 LUAD WGS tissue_normal CPT0118710009 90f70141-a933-4a7f-8dcf-d201bbb20119_wgs_gdc_realn.bam 104660057999 BAM harmonized CPTAC3 8b9e546e-c39b-40f7-820a-02a5febe8fec 11796c22a2cc678d566b863202823515 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.WGS.N C3N-02150 LUAD WGS blood_normal CPT0119930002 CPT0119930002.WholeGenome.RP-1303.bam 57139921267 BAM aligned CPTAC3 66664976-00c8-4bbe-841e-f939a0b24902 7bb77f26beb6dcc62f1c787ed3e1e3e5 {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02150.WGS.N.hg38 C3N-02150 LUAD WGS blood_normal CPT0119930002 2f8ab529-beb9-4c49-86cf-a5440ec3fe87_wgs_gdc_realn.bam 83316327566 BAM harmonized CPTAC3 2ed5e957-600f-4238-a408-b23896cd2131 d5bb10c3ee120ad96789d0567b0b08c6 {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02150.WGS.T C3N-02150 LUAD WGS tumor CPT0118700006 CPT0118700006.WholeGenome.RP-1303.bam 72836286792 BAM aligned CPTAC3 d0c87e61-786c-4b5b-a272-70e143c97ab2 675887dcc62aca5be35d43b979388465 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor"} -C3N-02150.WGS.T.hg38 C3N-02150 LUAD WGS tumor CPT0118700006 7ff33498-d50f-417e-b3a2-83bf77515b46_wgs_gdc_realn.bam 105672788597 BAM harmonized CPTAC3 1ed668c2-5a8f-4223-9626-72a7a6dd0149 18a0b8ff68d3b2ed08eb6592f1758716 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor"} -C3N-02150.WXS.A C3N-02150 LUAD WXS tissue_normal CPT0118710009 CPT0118710009.WholeExome.RP-1303.bam 30441846058 BAM aligned CPTAC3 ef44f4b7-8ebd-47c9-b163-cb1ecc76002a b1f7c5d0af93df0161e782931e248141 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.WXS.A.hg38 C3N-02150 LUAD WXS tissue_normal CPT0118710009 90f70141-a933-4a7f-8dcf-d201bbb20119_wxs_gdc_realn.bam 40790488154 BAM harmonized CPTAC3 7b0f8589-d63a-4316-a583-b8a9bc88fec3 62d835c229878cecc375d2ee7d3e0028 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02150.WXS.N C3N-02150 LUAD WXS blood_normal CPT0119930002 CPT0119930002.WholeExome.RP-1303.bam 33338238409 BAM aligned CPTAC3 2b9d2365-3e90-425b-bad3-e8ef827ed08e 71e72003436273179d2545a3a6c010ce {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02150.WXS.N.hg38 C3N-02150 LUAD WXS blood_normal CPT0119930002 2f8ab529-beb9-4c49-86cf-a5440ec3fe87_wxs_gdc_realn.bam 44457180754 BAM harmonized CPTAC3 13729c5e-e258-4779-9ff9-e09ceeba5c23 9e873a9626315b5996fe745524428fd7 {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-02150.WXS.T C3N-02150 LUAD WXS tumor CPT0118700006 CPT0118700006.WholeExome.RP-1303.bam 38148322439 BAM aligned CPTAC3 93a511f0-76f1-4e27-b68c-2161be7c6585 2ac626aacaffabbaa6efc221bf440010 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor"} -C3N-02150.WXS.T.hg38 C3N-02150 LUAD WXS tumor CPT0118700006 7ff33498-d50f-417e-b3a2-83bf77515b46_wxs_gdc_realn.bam 52422129939 BAM harmonized CPTAC3 6ad764a5-6afe-4ff0-972b-8725cc8b4006 026e943468c92486eae7d60a24a1498e {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor"} -C3N-02152.MethArray.Green.A C3N-02152 LUAD Methylation_Array tissue_normal CPT0213790007 203561450100_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6f0bb352-d01e-43cb-b4c6-0f6b06d4ca71 4a7f9eefb0dac2740c34639f39327c07 {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.MethArray.Green.T C3N-02152 LUAD Methylation_Array tumor CPT0213780007 203561450018_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b4a441fa-5a41-4188-93d4-bd145724aa56 3318c685ca32a6e86aed7c9b465b2120 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor"} -C3N-02152.MethArray.Red.A C3N-02152 LUAD Methylation_Array tissue_normal CPT0213790007 203561450100_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 ea61dd3c-0a92-47b3-8c80-a23420355232 9e12932f51a21b36ff148d8c2f2a115c {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.MethArray.Red.T C3N-02152 LUAD Methylation_Array tumor CPT0213780007 203561450018_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a9a7f844-e090-4544-b4fc-581cdc7672dc b35be24ccc5b23fb409f7e9b9967df66 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor"} -C3N-02152.miRNA-Seq.A.hg38 C3N-02152 LUAD miRNA-Seq tissue_normal CPT0213790010 647e3ef5-fe44-4936-bf8e-3363f257299a_mirnaseq_gdc_realn.bam 245052321 BAM harmonized CPTAC3 47506536-55c4-4a6a-8b72-cf2138b54c67 b51a700c055736522590a48e1d836dc0 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.miRNA-Seq.S140_L008_R1.T C3N-02152 LUAD miRNA-Seq tumor CPT0213780010 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTCAA_S140_L008_R1_001.unaln.bam 418453860 BAM S140_L008_R1 unaligned CPTAC3 61567e60-d4eb-4604-8952-0a508e5aa469 867276273d8c47c4d617cb7a482290e1 {"aliquot_tag": "ALQ_ff1d2770", "sample": "S140", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02152.miRNA-Seq.S37_L005_R1.A C3N-02152 LUAD miRNA-Seq tissue_normal CPT0213790010 190712_UNC32-K00270_0192_BH7HL3BBXY_AGTTCC_S37_L005_R1_001.unaln.bam 214854293 BAM S37_L005_R1 unaligned CPTAC3 fd5aae4b-3d55-4a23-b179-2837ca343377 0a1fc175af88de99249ab98438cca8b9 {"aliquot_tag": "ALQ_c27d0ec0", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.miRNA-Seq.T.hg38 C3N-02152 LUAD miRNA-Seq tumor CPT0213780010 cb904d55-f0c1-44c5-beef-f8ce5ce41b47_mirnaseq_gdc_realn.bam 451279215 BAM harmonized CPTAC3 ddd10449-97da-4927-80f9-e4397558f3a3 fdf6dc0c9d3b1b206516bf23168b32da {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor"} -C3N-02152.RNA-Seq.chimeric.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.chimeric.gdc_realn.bam 26824479 BAM chimeric harmonized CPTAC3 23979adb-44b2-43b5-9eba-c377f2c70991 c9a6bb4080a07d51e772b49e8d2c7044 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.RNA-Seq.chimeric.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.chimeric.gdc_realn.bam 29088869 BAM chimeric harmonized CPTAC3 3dcacbff-0d89-4be9-96f0-92a6ed7ca878 54e6412268f8806070d8a446544c923e {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor"} -C3N-02152.RNA-Seq.genomic.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.genomic.gdc_realn.bam 6722834500 BAM genomic harmonized CPTAC3 67f8ab22-7dc9-49e6-8a80-856586d69a0e bd41fcd5db759bd97d3bc46802bede63 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.RNA-Seq.genomic.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.genomic.gdc_realn.bam 7965194908 BAM genomic harmonized CPTAC3 cc1c9459-aaba-4625-9dd8-2797b1d56c76 81807dcbfd5d4b8ada269166eeaa5a3a {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor"} -C3N-02152.RNA-Seq.S21_L006_R1.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R1_001.fastq.gz 3215151593 FASTQ S21_L006_R1 unaligned CPTAC3 fd006dcd-2dbf-477a-9d4a-7a838a7c0f87 fcfc363c457796f58ae680e16d0523ad {"aliquot_tag": "ALQ_c27d0ec0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.RNA-Seq.S21_L006_R2.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R2_001.fastq.gz 3423211453 FASTQ S21_L006_R2 unaligned CPTAC3 2c8d43f8-39c1-4d42-861e-733d44c45f55 d39ed16c6de6fe982e79b6522d4bd621 {"aliquot_tag": "ALQ_c27d0ec0", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.RNA-Seq.S22_L006_R1.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3780577816 FASTQ S22_L006_R1 unaligned CPTAC3 ff6460e8-9b60-464d-812d-fd7a62d1f4f7 91984d2d750fea307b434ec5bd5e8631 {"aliquot_tag": "ALQ_ff1d2770", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02152.RNA-Seq.S22_L006_R2.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 4057251399 FASTQ S22_L006_R2 unaligned CPTAC3 ad7d2edd-5cdc-46f9-a31c-9ca68f2eda09 968795a62634a2da0ca4523ec2e41d70 {"aliquot_tag": "ALQ_ff1d2770", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02152.RNA-Seq.transcriptome.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.transcriptome.gdc_realn.bam 7643707635 BAM transcriptome harmonized CPTAC3 f3a57444-fabb-472e-a77e-78161a700219 09a8c2d6df46d9beaef6637edb5b8664 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.RNA-Seq.transcriptome.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.transcriptome.gdc_realn.bam 9853448824 BAM transcriptome harmonized CPTAC3 0f44cc1a-6892-4b04-bfd0-146aa064f3af 80f7098752f4471e442856c1a313546d {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor"} -C3N-02152.WGS.N C3N-02152 LUAD WGS blood_normal CPT0213870002 CPT0213870002.WholeGenome.RP-1303.bam 55692279926 BAM aligned CPTAC3 e809edc2-604b-486c-b646-6a28b027b3f9 09e9f21ddc96fbb10fa1b4298ef81043 {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal"} -C3N-02152.WGS.N.hg38 C3N-02152 LUAD WGS blood_normal CPT0213870002 3299cdaa-f8e7-42b1-b141-c111fed56e3c_wgs_gdc_realn.bam 81505154773 BAM harmonized CPTAC3 85cb595c-9877-4cbd-ae67-27aadd3b195d bcc41cbcc9fff53626ca03cde95dbf4e {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal"} -C3N-02152.WGS.T C3N-02152 LUAD WGS tumor CPT0213780007 CPT0213780007.WholeGenome.RP-1303.bam 60830350509 BAM aligned CPTAC3 19fd2713-33c9-4f22-ad51-7109448e2b86 054ccfd664a8f7dd0e98052a1e4dc7c8 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor"} -C3N-02152.WGS.T.hg38 C3N-02152 LUAD WGS tumor CPT0213780007 94b8ee40-d718-48af-97d6-5b6528f4115e_wgs_gdc_realn.bam 89274500188 BAM harmonized CPTAC3 c9838e83-e208-4885-b9cd-658d5c8e817f 5c01ced9f2091a5423e70d43711de735 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor"} -C3N-02152.WXS.A C3N-02152 LUAD WXS tissue_normal CPT0213790007 CPT0213790007.WholeExome.RP-1303.bam 24562004122 BAM aligned CPTAC3 6b49e6ed-e132-4860-966f-7e35aecc89fa fc727268643ce0cc43b72d6039c0be4d {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.WXS.A.hg38 C3N-02152 LUAD WXS tissue_normal CPT0213790007 02ac19e0-ae8a-4b7f-af0d-0ff5f078ec0c_wxs_gdc_realn.bam 34518714502 BAM harmonized CPTAC3 79996815-6ab2-40c4-a97f-94d9e2c309f4 29e8f9c3198a3423e8a74674bad1264a {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02152.WXS.N C3N-02152 LUAD WXS blood_normal CPT0213870002 CPT0213870002.WholeExome.RP-1303.bam 24149373751 BAM aligned CPTAC3 d5f5a82d-c753-4971-af96-e7add499e1f7 882518bbf7ff5b01b93db6c3ddb9274d {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal"} -C3N-02152.WXS.N.hg38 C3N-02152 LUAD WXS blood_normal CPT0213870002 3299cdaa-f8e7-42b1-b141-c111fed56e3c_wxs_gdc_realn.bam 33407520388 BAM harmonized CPTAC3 27bb1cf0-397e-405c-902a-f93d89869172 c7f46831002c3ab2477ac0d16941c96b {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal"} -C3N-02152.WXS.T C3N-02152 LUAD WXS tumor CPT0213780007 CPT0213780007.WholeExome.RP-1303.bam 23322336328 BAM aligned CPTAC3 6ed8f78e-1cfd-46af-850a-31a61c07ffc1 ae55387a16368a1d0cedafb618b166fd {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor"} -C3N-02152.WXS.T.hg38 C3N-02152 LUAD WXS tumor CPT0213780007 94b8ee40-d718-48af-97d6-5b6528f4115e_wxs_gdc_realn.bam 33110331854 BAM harmonized CPTAC3 48591dca-99a8-4a4b-9df6-9ea947f5aa20 28ae9f8e1f4a2c56340dcd9031b9e33e {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor"} -C3N-02153.MethArray.Green.A C3N-02153 LUAD Methylation_Array tissue_normal CPT0118770009 203027390073_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e18f9ee4-a078-4666-84bb-04828011b87e 31a5cf8281c762c64a09391f5859cce5 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.MethArray.Green.T C3N-02153 LUAD Methylation_Array tumor CPT0118740006 202234380102_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a11ea60b-3627-48a5-bbac-b8d5753fcd6e 1869fb8d1e0e9bafe3d940e93b5dd49b {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor"} -C3N-02153.MethArray.Red.A C3N-02153 LUAD Methylation_Array tissue_normal CPT0118770009 203027390073_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 456cc991-3fc7-417c-a65d-19e15db4a463 1e9ff45829208f6b1f895f58b3a2abb8 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.MethArray.Red.T C3N-02153 LUAD Methylation_Array tumor CPT0118740006 202234380102_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 9ab6afc5-4a42-42cf-9693-c84580fb3f0d d39bf369c246a6d2f1ff96650ed50127 {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor"} -C3N-02153.miRNA-Seq.A.hg38 C3N-02153 LUAD miRNA-Seq tissue_normal CPT0118770006 131256f9-325e-47ab-ae58-8f8a0bdc711a_mirnaseq_gdc_realn.bam 219172207 BAM harmonized CPTAC3 5eaf7e92-9d61-45a1-8ae9-1c9174b73c15 0488af8cbcb304ef831e4e31b7295207 {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.miRNA-Seq.S20_L004_R1.T C3N-02153 LUAD miRNA-Seq tumor CPT0118740009 181119_UNC31-K00269_0165_AH27WCBBXY_TATAAT_S20_L004_R1_001.unaln.bam 269801150 BAM S20_L004_R1 unaligned CPTAC3 20e8ffd3-2783-4ef6-ae12-dab3c6b405de 7f6899b2e37c94695ef8f0b6031c3748 {"aliquot_tag": "ALQ_61a02bab", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02153.miRNA-Seq.S45_L006_R1.A C3N-02153 LUAD miRNA-Seq tissue_normal CPT0118770006 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L006_R1_001.unaln.bam 196653878 BAM S45_L006_R1 unaligned CPTAC3 1ae8e11e-1c7d-46b9-af1b-02075cb497d2 78ce0e628ac77e2009ba2524d17bdb16 {"aliquot_tag": "ALQ_b6bf4cea", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.miRNA-Seq.T.hg38 C3N-02153 LUAD miRNA-Seq tumor CPT0118740009 6cf7025b-7cfb-47c5-80d5-be68b498be64_mirnaseq_gdc_realn.bam 288098789 BAM harmonized CPTAC3 a4205c1f-b8b3-43f1-af22-6f2efcbd3275 026dc4069851d83b5143314026dbd19b {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor"} -C3N-02153.RNA-Seq.chimeric.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.chimeric.gdc_realn.bam 119161499 BAM chimeric harmonized CPTAC3 4a4e7102-e8f0-40fd-af3d-c8816e352f14 e3ebcb502a7a9426f58145e4a66b0b49 {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.RNA-Seq.chimeric.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.chimeric.gdc_realn.bam 74133855 BAM chimeric harmonized CPTAC3 388e3ef1-4459-40b5-b17c-44eff4d909cb cdf79695f6bf06e1fbd3f72ed786cbe4 {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor"} -C3N-02153.RNA-Seq.genomic.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.genomic.gdc_realn.bam 7445027021 BAM genomic harmonized CPTAC3 e99a5ba8-c303-48be-a0ea-e05eaf57e12f 6af07b54c55c87dc1b4bc784069879dc {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.RNA-Seq.genomic.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.genomic.gdc_realn.bam 7812122595 BAM genomic harmonized CPTAC3 51fe509b-51e7-476d-8b08-9b05622f98fb 7313c3d6495d5a97fed4b270129aa22c {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor"} -C3N-02153.RNA-Seq.S12_L004_R1.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R1_001.fastq.gz 3609502695 FASTQ S12_L004_R1 unaligned CPTAC3 e5fe04bc-dd4e-496a-a8ad-11210a10aeaf 3a841f4b525eefbe134c7d5b20dff7fd {"aliquot_tag": "ALQ_b6bf4cea", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.RNA-Seq.S12_L004_R2.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R2_001.fastq.gz 4014951162 FASTQ S12_L004_R2 unaligned CPTAC3 7fe50e5a-eec1-4fae-825f-8b1797741125 e3ccc3ff751a4a24dd4982dca6af6a58 {"aliquot_tag": "ALQ_b6bf4cea", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.RNA-Seq.S21_L006_R1.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 3700498060 FASTQ S21_L006_R1 unaligned CPTAC3 c24bfb5f-7d82-4aad-a8ef-3bc0fc68f1f7 ff976d4ee9340cb6f79a1e1c57b39377 {"aliquot_tag": "ALQ_61a02bab", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02153.RNA-Seq.S21_L006_R2.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 4149659004 FASTQ S21_L006_R2 unaligned CPTAC3 eae1810b-311b-4c8a-a687-62a903e0af6f 2e2cffe85608c9da66695fd3e5f3f264 {"aliquot_tag": "ALQ_61a02bab", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02153.RNA-Seq.transcriptome.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.transcriptome.gdc_realn.bam 9597472711 BAM transcriptome harmonized CPTAC3 26ec9f0c-ece1-46d5-b4ed-cac9322a6e51 1ba57fa009dcd530bbc4f3c7d458df99 {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.RNA-Seq.transcriptome.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.transcriptome.gdc_realn.bam 10933785636 BAM transcriptome harmonized CPTAC3 4b75e058-be63-42a4-bc0a-975ca251cf25 016f56c72dc97353561c9a378a3878ac {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor"} -C3N-02153.WGS.A C3N-02153 LUAD WGS tissue_normal CPT0118770009 CPT0118770009.WholeGenome.RP-1303.bam 60943193860 BAM aligned CPTAC3 d8335af2-daf7-4e06-92f7-c2c36356237a 2346d661f7ae42540e4b44b8b2fa84e9 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.WGS.A.hg38 C3N-02153 LUAD WGS tissue_normal CPT0118770009 6651d0de-376c-4aee-a9bf-c3e4f3133498_wgs_gdc_realn.bam 89378010900 BAM harmonized CPTAC3 a06dfda2-7f30-4ab4-95b1-21adec453ee1 e4534fa6efabb0581bdbcdabf8dded5d {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.WGS.N C3N-02153 LUAD WGS blood_normal CPT0119990002 CPT0119990002.WholeGenome.RP-1303.bam 57817291678 BAM aligned CPTAC3 bd7f9bb8-e34f-49ba-a9a7-b3078f99e477 19ac1f2980795d719a006c00f593ecc1 {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal"} -C3N-02153.WGS.N.hg38 C3N-02153 LUAD WGS blood_normal CPT0119990002 23c2a3ed-1037-4fc5-b178-d815bb0d2c8c_wgs_gdc_realn.bam 87313774513 BAM harmonized CPTAC3 4d15457a-3ca3-46fe-a337-0684fd490005 ffa9df79f33aabb7052d0f7eb5638bec {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal"} -C3N-02153.WGS.T C3N-02153 LUAD WGS tumor CPT0118740006 CPT0118740006.WholeGenome.RP-1303.bam 56771231623 BAM aligned CPTAC3 0c06b6f2-1dfd-4349-80ed-3778bc633ba0 3f917f572a475ba477353d5d5976ed1a {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor"} -C3N-02153.WGS.T.hg38 C3N-02153 LUAD WGS tumor CPT0118740006 209d6415-2a61-4428-abba-6774dbaabd97_wgs_gdc_realn.bam 84094238178 BAM harmonized CPTAC3 e08d97c0-a0a4-4623-b81b-9259fc7d5d39 0ab0e708a988d4613ff3b676167aaa04 {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor"} -C3N-02153.WXS.A C3N-02153 LUAD WXS tissue_normal CPT0118770009 CPT0118770009.WholeExome.RP-1303.bam 29138270527 BAM aligned CPTAC3 55ec8caa-9362-4363-bf75-62eff674f76e b3bb471e8e9d65e12287cd92b09fed81 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.WXS.A.hg38 C3N-02153 LUAD WXS tissue_normal CPT0118770009 6651d0de-376c-4aee-a9bf-c3e4f3133498_wxs_gdc_realn.bam 39077990533 BAM harmonized CPTAC3 2c4f98cb-4382-4bd0-ab34-5b93f680d54e 9f828419d7a7401e29ceb3abe91f925c {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02153.WXS.N C3N-02153 LUAD WXS blood_normal CPT0119990002 CPT0119990002.WholeExome.RP-1303.bam 40646522621 BAM aligned CPTAC3 34d5109a-e541-486b-be06-8e27d596ba19 26914221a2f2149eeacf0ab72b0430f5 {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal"} -C3N-02153.WXS.N.hg38 C3N-02153 LUAD WXS blood_normal CPT0119990002 23c2a3ed-1037-4fc5-b178-d815bb0d2c8c_wxs_gdc_realn.bam 54359204056 BAM harmonized CPTAC3 608118ab-c03d-4616-bed0-c0f72cea79e7 3b0e130172058a6a519083d4a7b4370f {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal"} -C3N-02153.WXS.T C3N-02153 LUAD WXS tumor CPT0118740006 CPT0118740006.WholeExome.RP-1303.bam 45682693240 BAM aligned CPTAC3 4ba718a8-d0d0-424c-9f8e-ec3730a05dae da747a82ace140c22488af83a5105bfa {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor"} -C3N-02153.WXS.T.hg38 C3N-02153 LUAD WXS tumor CPT0118740006 209d6415-2a61-4428-abba-6774dbaabd97_wxs_gdc_realn.bam 62552051041 BAM harmonized CPTAC3 f8cd3f86-e4aa-45a1-9958-d1f84ed28795 936cd1e7c6dd1921eda58dfdf22861c2 {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor"} -C3N-02155.MethArray.Green.A C3N-02155 LUAD Methylation_Array tissue_normal CPT0118830009 203027390034_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b854d5d0-1e11-41bd-ab7a-521deaf8a7b7 b942fafcfa06dc811a3b67196635653c {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.MethArray.Green.T C3N-02155 LUAD Methylation_Array tumor CPT0118810006 202234370079_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bb196fe4-e9c4-4f6d-a1fe-b543e631c88e 1fec46a9f10b7c7665025063bbb3f01a {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor"} -C3N-02155.MethArray.Red.A C3N-02155 LUAD Methylation_Array tissue_normal CPT0118830009 203027390034_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 67c73672-997e-46f4-89cf-7f6dfed9f5b1 06d6f5969646459264a2cbb7f81ce911 {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.MethArray.Red.T C3N-02155 LUAD Methylation_Array tumor CPT0118810006 202234370079_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 f766dae3-f90e-4e18-95f3-09d770ca9547 040b52de1094ab86edbef503d7dbffe9 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor"} -C3N-02155.miRNA-Seq.A.hg38 C3N-02155 LUAD miRNA-Seq tissue_normal CPT0118830006 aefe3f43-d7a8-4424-8141-8cf9982204eb_mirnaseq_gdc_realn.bam 234141371 BAM harmonized CPTAC3 6e979eb0-f3c5-4970-9f62-14611878cd18 240506963f18a386c363ed636d1ecb2a {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.miRNA-Seq.S21_L004_R1.T C3N-02155 LUAD miRNA-Seq tumor CPT0118810009 181119_UNC31-K00269_0165_AH27WCBBXY_TCATTC_S21_L004_R1_001.unaln.bam 186832700 BAM S21_L004_R1 unaligned CPTAC3 797313d3-2c42-4e16-9935-d96eee572fe6 79c3c8d43f87bc611706e2a3ce5f60aa {"aliquot_tag": "ALQ_5816160e", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02155.miRNA-Seq.S46_L006_R1.A C3N-02155 LUAD miRNA-Seq tissue_normal CPT0118830006 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L006_R1_001.unaln.bam 212461231 BAM S46_L006_R1 unaligned CPTAC3 0ac64759-7aa6-45ab-b97c-90d39a6c4df6 6c7fcf913a814716127d853473d0b65a {"aliquot_tag": "ALQ_b26958ff", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.miRNA-Seq.T.hg38 C3N-02155 LUAD miRNA-Seq tumor CPT0118810009 67396db5-4715-4c08-8a9b-bf861f8f8c33_mirnaseq_gdc_realn.bam 201458794 BAM harmonized CPTAC3 2f103a3a-298d-49ce-a5d3-2838bf3b48c6 c49db62e2c33f2d4e0969a475364161e {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor"} -C3N-02155.RNA-Seq.chimeric.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.chimeric.gdc_realn.bam 125959932 BAM chimeric harmonized CPTAC3 e25f3f1d-52ba-4b55-81ea-1bfba42a405a dc7f586e834d04a090ca5f94520ff910 {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.RNA-Seq.chimeric.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.chimeric.gdc_realn.bam 98515029 BAM chimeric harmonized CPTAC3 59078078-03d5-487c-a641-7723441e3937 1af1f6fed6fe94a3658a971b739571f8 {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor"} -C3N-02155.RNA-Seq.genomic.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.genomic.gdc_realn.bam 8235149281 BAM genomic harmonized CPTAC3 aa2a1638-5dc4-48da-81d0-79071b376a1f 7a5da4134a4bd243d0c299e81816b8fa {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.RNA-Seq.genomic.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.genomic.gdc_realn.bam 9695716565 BAM genomic harmonized CPTAC3 b9e55002-5275-4186-abcd-8acb7a63c6dd c81276f9e3293b89806eb912b730e24c {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor"} -C3N-02155.RNA-Seq.S11_L004_R1.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R1_001.fastq.gz 3886925514 FASTQ S11_L004_R1 unaligned CPTAC3 c03632dd-75be-4d6a-8943-deeb263ec97a b6085bae71f21fec768db5755be8f354 {"aliquot_tag": "ALQ_b26958ff", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.RNA-Seq.S11_L004_R2.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R2_001.fastq.gz 4271302969 FASTQ S11_L004_R2 unaligned CPTAC3 2e7baf63-9630-4c2b-852c-c93fe3520e4d 03014b582fdfb8633d442a63648824d9 {"aliquot_tag": "ALQ_b26958ff", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.RNA-Seq.S20_L006_R1.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R1_001.fastq.gz 4483392925 FASTQ S20_L006_R1 unaligned CPTAC3 1089cd84-cf1f-4909-9415-def442e739e4 516751c28b729c8ab7ef1732238eae25 {"aliquot_tag": "ALQ_5816160e", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02155.RNA-Seq.S20_L006_R2.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R2_001.fastq.gz 4979758655 FASTQ S20_L006_R2 unaligned CPTAC3 c4f6e3b6-0d28-4f97-9717-597deda328cc 71574ab52e47032173a53d1da198184c {"aliquot_tag": "ALQ_5816160e", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02155.RNA-Seq.transcriptome.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.transcriptome.gdc_realn.bam 10182580217 BAM transcriptome harmonized CPTAC3 65810de4-d8a1-4623-9371-df90830509e9 d858596f89c2571c1f2c836b62372462 {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.RNA-Seq.transcriptome.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.transcriptome.gdc_realn.bam 11616962768 BAM transcriptome harmonized CPTAC3 03e790f8-84ea-4208-8f47-0d3671c8d0ce 394b69221e9710825b7a53931f9d63a3 {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor"} -C3N-02155.WGS.A C3N-02155 LUAD WGS tissue_normal CPT0118830009 CPT0118830009.WholeGenome.RP-1303.bam 52634776484 BAM aligned CPTAC3 2593d748-4e9c-4389-a4b3-25f3ed6e90ab d23111cb13502722df9422538621abc3 {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.WGS.A.hg38 C3N-02155 LUAD WGS tissue_normal CPT0118830009 ed19b4b1-22a5-412b-bb6e-b00d0f084006_wgs_gdc_realn.bam 76365326379 BAM harmonized CPTAC3 1d86c999-d346-42e7-bdea-41d838c1834a 8c646952df1f33f5dd41da1a69509663 {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.WGS.N C3N-02155 LUAD WGS blood_normal CPT0120050002 CPT0120050002.WholeGenome.RP-1303.bam 61394282208 BAM aligned CPTAC3 9617f4a2-0a94-4e86-aee6-e5ea8c2e1795 8115d6718d6ef66b9bbf7673db2759f5 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal"} -C3N-02155.WGS.N.hg38 C3N-02155 LUAD WGS blood_normal CPT0120050002 d7a1f593-71f7-4f1c-be1e-23a63fd78c5d_wgs_gdc_realn.bam 93200654909 BAM harmonized CPTAC3 0cc62591-f95e-45ef-bbea-eab30a0d7770 e6ec9c70c47ef2ff05db4f3ae1a300b6 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal"} -C3N-02155.WGS.T C3N-02155 LUAD WGS tumor CPT0118810006 CPT0118810006.WholeGenome.RP-1303.bam 60518574056 BAM aligned CPTAC3 84ade3b8-8a04-4e90-b9f1-ab153f97f64a 31cbf7ca8b8d5adbf5f3f782d8deed33 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor"} -C3N-02155.WGS.T.hg38 C3N-02155 LUAD WGS tumor CPT0118810006 10cc6e4f-85a1-4d9b-a238-73cbb21ad04b_wgs_gdc_realn.bam 90606374205 BAM harmonized CPTAC3 f5ac4d2a-bc3a-4a8b-b419-4e74e56073b3 aa665d706819f4c369d70145bdf180d5 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor"} -C3N-02155.WXS.A C3N-02155 LUAD WXS tissue_normal CPT0118830009 CPT0118830009.WholeExome.RP-1303.bam 36808744569 BAM aligned CPTAC3 d8b6e44b-cc2c-4610-9857-80692eefddd1 cf74e47c7df4154a9e56e25009a96a2f {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.WXS.A.hg38 C3N-02155 LUAD WXS tissue_normal CPT0118830009 ed19b4b1-22a5-412b-bb6e-b00d0f084006_wxs_gdc_realn.bam 49569792896 BAM harmonized CPTAC3 caded12b-bb32-4eea-848b-81ad0ffb495b a664837ba33ab6be3a5d3785e2266f4a {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02155.WXS.N C3N-02155 LUAD WXS blood_normal CPT0120050002 CPT0120050002.WholeExome.RP-1303.bam 41252251582 BAM aligned CPTAC3 7172cf5d-7aa9-4725-b950-152263d0d6ec e40cdd6dafbb63db705aeaafdc91d3c0 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal"} -C3N-02155.WXS.N.hg38 C3N-02155 LUAD WXS blood_normal CPT0120050002 d7a1f593-71f7-4f1c-be1e-23a63fd78c5d_wxs_gdc_realn.bam 53809996765 BAM harmonized CPTAC3 40a3338b-9fb7-4e8b-8837-16607de5f635 9a490cd753bf9365dfd5e6b254fab0d5 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal"} -C3N-02155.WXS.T C3N-02155 LUAD WXS tumor CPT0118810006 CPT0118810006.WholeExome.RP-1303.bam 54801946019 BAM aligned CPTAC3 675a43c6-a8b9-4039-845f-f302c0e58445 2081701a2e33eaa6bd3d0417ccfd8c02 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor"} -C3N-02155.WXS.T.hg38 C3N-02155 LUAD WXS tumor CPT0118810006 10cc6e4f-85a1-4d9b-a238-73cbb21ad04b_wxs_gdc_realn.bam 74001367606 BAM harmonized CPTAC3 243e3716-55b5-4322-817c-390639f79182 b2b3a98b8e37a08436246ebcd12b5a33 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor"} -C3N-02158.MethArray.Green.A C3N-02158 LUAD Methylation_Array tissue_normal CPT0118890009 203028200093_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e20dc523-a892-4646-acac-b2693d58107d 233e39284a071124fbc9bdc504452bcc {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.MethArray.Green.T C3N-02158 LUAD Methylation_Array tumor CPT0118880006 202234370120_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 79f025a7-a4d1-437b-a059-0dcf07d57370 fc336a283b82d784a2a74637bf50aaf4 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor"} -C3N-02158.MethArray.Red.A C3N-02158 LUAD Methylation_Array tissue_normal CPT0118890009 203028200093_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 de880f59-cf2a-4f33-941f-cb7ff65baf80 f05b45b922634657ee22e59bfa801094 {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.MethArray.Red.T C3N-02158 LUAD Methylation_Array tumor CPT0118880006 202234370120_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 20b6def1-5813-45f4-bf2f-047c16769ca5 c5468f58404c383d4d9a2f71ddf3279a {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor"} -C3N-02158.miRNA-Seq.A.hg38 C3N-02158 LUAD miRNA-Seq tissue_normal CPT0118890006 1c8689ad-d70b-41b8-9678-1f4084515582_mirnaseq_gdc_realn.bam 252114178 BAM harmonized CPTAC3 01feb945-83b4-4a5d-8fc3-0665e666b527 7f49b042b07063df68dc161b11608ce0 {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.miRNA-Seq.S22_L004_R1.T C3N-02158 LUAD miRNA-Seq tumor CPT0118880009 181119_UNC31-K00269_0165_AH27WCBBXY_TCCCGA_S22_L004_R1_001.unaln.bam 264369901 BAM S22_L004_R1 unaligned CPTAC3 3084f7a8-c3d1-4f18-b34b-fe434127da81 d38deb498ef5a12596456542117f8b51 {"aliquot_tag": "ALQ_5506747f", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02158.miRNA-Seq.S47_L006_R1.A C3N-02158 LUAD miRNA-Seq tissue_normal CPT0118890006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L006_R1_001.unaln.bam 227045241 BAM S47_L006_R1 unaligned CPTAC3 9ce26a03-4a39-47b3-baba-e4b40ee85dab 762218f340d51397747dceba684411b7 {"aliquot_tag": "ALQ_f8d9405e", "sample": "S47", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.miRNA-Seq.T.hg38 C3N-02158 LUAD miRNA-Seq tumor CPT0118880009 de54dfcb-f221-402a-9e22-4913de4d2859_mirnaseq_gdc_realn.bam 285881759 BAM harmonized CPTAC3 647bd772-c614-4da8-92b8-080e9b3810d6 bb944e6e916053e50c79595830b9c1e7 {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor"} -C3N-02158.RNA-Seq.chimeric.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.chimeric.gdc_realn.bam 148160718 BAM chimeric harmonized CPTAC3 b0376378-2110-4100-8ee0-2e6278fb0c69 19aeb74e35f109587773884ac6103642 {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.RNA-Seq.chimeric.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.chimeric.gdc_realn.bam 40971506 BAM chimeric harmonized CPTAC3 b7b4781c-1ddb-4c7e-9f54-a11270b0e8c1 224057da30f7ca3a020e8f1bced6e9bd {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor"} -C3N-02158.RNA-Seq.genomic.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.genomic.gdc_realn.bam 8963973694 BAM genomic harmonized CPTAC3 055deaf1-b949-42c1-8f7d-380a8db6a339 56d6a04375b0f5b8c532823756c449b2 {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.RNA-Seq.genomic.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.genomic.gdc_realn.bam 7722666441 BAM genomic harmonized CPTAC3 57ee7913-c0fc-4b4b-aff2-aeb086ae232c e4425ee19ded64ad90faaf1e458e3eff {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor"} -C3N-02158.RNA-Seq.S14_L004_R1.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R1_001.fastq.gz 4455016308 FASTQ S14_L004_R1 unaligned CPTAC3 008de630-33d2-4874-ba58-b5638a251549 4389f9929e21318e6c0c818ad949c6f3 {"aliquot_tag": "ALQ_f8d9405e", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.RNA-Seq.S14_L004_R2.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R2_001.fastq.gz 4865676229 FASTQ S14_L004_R2 unaligned CPTAC3 1e3b88a5-6add-48a0-b1c6-b236f8347f1a 6ddd051bba540a9386459c261550729c {"aliquot_tag": "ALQ_f8d9405e", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.RNA-Seq.S23_L006_R1.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R1_001.fastq.gz 3626537852 FASTQ S23_L006_R1 unaligned CPTAC3 7f8a162d-54b9-4511-96d1-8a3a47a24964 e8f6a7cfefa4b4f6377a43bd007e9506 {"aliquot_tag": "ALQ_5506747f", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02158.RNA-Seq.S23_L006_R2.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R2_001.fastq.gz 4095542003 FASTQ S23_L006_R2 unaligned CPTAC3 ecfcbaf3-fa4d-404c-a7cb-d8ce868b611e 3d13e5979b94c5229f2416127a7cb638 {"aliquot_tag": "ALQ_5506747f", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02158.RNA-Seq.transcriptome.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.transcriptome.gdc_realn.bam 11589460194 BAM transcriptome harmonized CPTAC3 382846c0-7db0-466c-bd3a-34a8a3b4ce11 35fac63d9a01a877b71b799cda91c65c {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.RNA-Seq.transcriptome.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.transcriptome.gdc_realn.bam 10981713037 BAM transcriptome harmonized CPTAC3 89ae2bfe-e9c6-403a-8405-b113d9ec8930 76439d0a8bd954033fd6066afd42b928 {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor"} -C3N-02158.WGS.A C3N-02158 LUAD WGS tissue_normal CPT0118890009 CPT0118890009.WholeGenome.RP-1303.bam 58314843100 BAM aligned CPTAC3 49d3296b-e6b6-42d2-a952-44925b3ac612 d4cf5c66a37e2bc50e9c50e312a279ba {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.WGS.A.hg38 C3N-02158 LUAD WGS tissue_normal CPT0118890009 000d033c-72ae-4b2b-8b43-a8164c33f10c_wgs_gdc_realn.bam 85350998294 BAM harmonized CPTAC3 1995f31a-9560-4a55-a6df-4d404b816a21 3e458bbb836382f44cf39ee57ec52c01 {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.WGS.N C3N-02158 LUAD WGS blood_normal CPT0120110002 CPT0120110002.WholeGenome.RP-1303.bam 54939623529 BAM aligned CPTAC3 0c01ee94-c662-4fb5-80e9-58a0681c42b7 36a586498d5e50c402618f307a66309f {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-02158.WGS.N.hg38 C3N-02158 LUAD WGS blood_normal CPT0120110002 82c5ffdb-1610-46ff-ad84-2121cdef55e6_wgs_gdc_realn.bam 82583673686 BAM harmonized CPTAC3 aa23a83a-4678-4eba-80d3-bb3103cde067 fb78786c1e667ec699d70c2be41356c4 {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-02158.WGS.T C3N-02158 LUAD WGS tumor CPT0118880006 CPT0118880006.WholeGenome.RP-1303.bam 63901356688 BAM aligned CPTAC3 be399a46-e995-45c9-a2e9-7499f1447bf1 5f115aaacd555f319775bcab25e30498 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor"} -C3N-02158.WGS.T.hg38 C3N-02158 LUAD WGS tumor CPT0118880006 a12d567c-c0f4-4ff6-90d6-172f50402e90_wgs_gdc_realn.bam 93782603621 BAM harmonized CPTAC3 9bf1819a-7615-4a94-a664-10349342e0a9 f1395b9093b3ab50bb9eb6dcdf8a0105 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor"} -C3N-02158.WXS.A C3N-02158 LUAD WXS tissue_normal CPT0118890009 CPT0118890009.WholeExome.RP-1303.bam 30828769032 BAM aligned CPTAC3 a5f37f0a-e341-460c-a53b-7eef86c98874 076cb0bd1513de7a4d3bab70b0216fce {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.WXS.A.hg38 C3N-02158 LUAD WXS tissue_normal CPT0118890009 000d033c-72ae-4b2b-8b43-a8164c33f10c_wxs_gdc_realn.bam 41461064285 BAM harmonized CPTAC3 29eddf52-f350-41fe-b3ff-910fda1640a4 17d1236e5907554849f1da444e0e6838 {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02158.WXS.N C3N-02158 LUAD WXS blood_normal CPT0120110002 CPT0120110002.WholeExome.RP-1303.bam 25237975565 BAM aligned CPTAC3 e76f8d6c-4f0d-47af-b6f9-f27481aa80a7 b436e7e2b1b823c9f9687ce460ee2177 {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-02158.WXS.N.hg38 C3N-02158 LUAD WXS blood_normal CPT0120110002 82c5ffdb-1610-46ff-ad84-2121cdef55e6_wxs_gdc_realn.bam 33485647619 BAM harmonized CPTAC3 c67d4ccc-db44-4a28-850d-a4574f4de5d6 07bc4c0e6bab27981c1f83a6520a4ab2 {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal"} -C3N-02158.WXS.T C3N-02158 LUAD WXS tumor CPT0118880006 CPT0118880006.WholeExome.RP-1303.bam 34193253513 BAM aligned CPTAC3 ba57f36c-9abe-4a2f-8a4f-3511cb114621 209274e7b06f1a790a703f4277cdd264 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor"} -C3N-02158.WXS.T.hg38 C3N-02158 LUAD WXS tumor CPT0118880006 a12d567c-c0f4-4ff6-90d6-172f50402e90_wxs_gdc_realn.bam 46354989653 BAM harmonized CPTAC3 c8136f3c-2089-42f4-8fbf-5f38df538ec6 f3e7a96d8e51e71f36ec478c80c1f896 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor"} -C3N-02160.MethArray.Green.A C3N-02160 CCRCC Methylation_Array tissue_normal CPT0213970006 204373100108_R02C01_Grn.idat 13677950 IDAT Green NA CPTAC3 b3523cfd-3868-47f1-b793-6528543b7fe9 1e591c5c95cb09498423639c23e263aa {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.MethArray.Green.T C3N-02160 CCRCC Methylation_Array tumor CPT0213960006 203028200100_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1d5d9c82-87d5-4c71-9859-7448ed49a216 b8f76376955eb4b5e0a3522360b28c3d {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor"} -C3N-02160.MethArray.Red.A C3N-02160 CCRCC Methylation_Array tissue_normal CPT0213970006 204373100108_R02C01_Red.idat 13677950 IDAT Red NA CPTAC3 f8b7a3b4-09e9-47fb-abf5-d23f854946aa fc4d6f87ebccda6bcca66509a0d4d42b {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.MethArray.Red.T C3N-02160 CCRCC Methylation_Array tumor CPT0213960006 203028200100_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 134ec664-291e-4d44-9aaf-16f72ed24d82 2a271cdc4dd7c0560a52d1eaa17a025a {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor"} -C3N-02160.miRNA-Seq.A.hg38 C3N-02160 CCRCC miRNA-Seq tissue_normal CPT0213970009 52d7413f-e80a-4e0f-a7de-96e4f54fb9a3_mirnaseq_gdc_realn.bam 214761207 BAM harmonized CPTAC3 d99b231e-1725-4750-b289-8937dfd8fdbc 9237de361867ce27fc0461e37ce881ca {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.miRNA-Seq.S3_L003_R1.A C3N-02160 CCRCC miRNA-Seq tissue_normal CPT0213970009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGGCA_S3_L003_R1_001.unaln.bam 194149956 BAM S3_L003_R1 unaligned CPTAC3 54d88906-1f77-4fc2-bf52-d69c99169925 9f33d2f430d2142a6cd73238e51e03ca {"aliquot_tag": "ALQ_27805834", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.miRNA-Seq.S46_L002_R1.T C3N-02160 CCRCC miRNA-Seq tumor CPT0213960013 190206_UNC31-K00269_0191_AH2WY5BBXY_TTAGGC_S46_L002_R1_001.unaln.bam 202268661 BAM S46_L002_R1 unaligned CPTAC3 dce015cd-a0ef-4b54-98ae-14dd05a54253 9c1d02846e6582abc9f626a89b43eb08 {"aliquot_tag": "ALQ_e32ea9db", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02160.miRNA-Seq.T.hg38 C3N-02160 CCRCC miRNA-Seq tumor CPT0213960013 fb6da363-348c-4ea3-bc93-465cf34a8ee9_mirnaseq_gdc_realn.bam 219537973 BAM harmonized CPTAC3 af4dc7b4-9306-4ebb-98d7-f722bf886ffb 4afee5cf6a9cffbad72f573fdba48162 {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor"} -C3N-02160.RNA-Seq.chimeric.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.chimeric.gdc_realn.bam 26881827 BAM chimeric harmonized CPTAC3 3c82bba9-b3c0-4382-a1fc-b2204b0079de cc3abfb01915d53f37ab7f615ddf0f6a {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.RNA-Seq.chimeric.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.chimeric.gdc_realn.bam 146640441 BAM chimeric harmonized CPTAC3 82202c27-c3dd-4b26-878d-6fffff8245c5 2db3ed09d6286b1a1971d246f07362da {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor"} -C3N-02160.RNA-Seq.genomic.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.genomic.gdc_realn.bam 5993147730 BAM genomic harmonized CPTAC3 55e92ae1-5f35-436d-94c3-885066424031 15d7ceed691183a8e6a99201002de563 {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.RNA-Seq.genomic.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.genomic.gdc_realn.bam 6511105230 BAM genomic harmonized CPTAC3 37f72a8d-9260-472b-a308-e1aa625d1a78 f8467f883780cf03f900e16f6e7fb1e5 {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor"} -C3N-02160.RNA-Seq.S10_L003_R1.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 2583516049 FASTQ S10_L003_R1 unaligned CPTAC3 6311faa9-c7e3-47b5-af45-ee9751856c2e f323cda1957e925e1f5bfc77200a8513 {"aliquot_tag": "ALQ_e32ea9db", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02160.RNA-Seq.S10_L003_R2.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 2861016981 FASTQ S10_L003_R2 unaligned CPTAC3 d91ebfcb-32c7-415b-b592-9e65bc58b765 9ed7e25fb176087a0848f5d117555172 {"aliquot_tag": "ALQ_e32ea9db", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02160.RNA-Seq.S20_L006_R1.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R1_001.fastq.gz 2689274844 FASTQ S20_L006_R1 unaligned CPTAC3 654f49bd-2dc4-4914-a25f-5e5e6a10b989 16aa4b39e7943e892b94e28fd21ba79f {"aliquot_tag": "ALQ_27805834", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.RNA-Seq.S20_L006_R2.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R2_001.fastq.gz 2966925408 FASTQ S20_L006_R2 unaligned CPTAC3 aaabdf49-a38f-423c-928d-ba307769224b 3abaa826dcb45ba449cc082e5e08075d {"aliquot_tag": "ALQ_27805834", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.RNA-Seq.transcriptome.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.transcriptome.gdc_realn.bam 6935610412 BAM transcriptome harmonized CPTAC3 ae5891f1-a553-4bd6-ad2a-19b3f7d927e3 cd74cb617782160e9de27d5e44a70df1 {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.RNA-Seq.transcriptome.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.transcriptome.gdc_realn.bam 7756258287 BAM transcriptome harmonized CPTAC3 585c11e5-1fd5-4b27-b192-666673d7d8f6 0deb620daf109aa9f3fb59692ec7ad73 {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor"} -C3N-02160.WGS.A C3N-02160 CCRCC WGS tissue_normal CPT0213970006 CPT0213970006.WholeGenome.RP-1303.bam 61890070939 BAM aligned CPTAC3 75b3b09f-9563-42cb-883e-205ca6fc86b5 50f7dd5e299fe862b60d05563fe8cd1a {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.WGS.A.hg38 C3N-02160 CCRCC WGS tissue_normal CPT0213970006 f7eb4d17-b505-46f4-89f4-da1c5695a5e2_wgs_gdc_realn.bam 92757430169 BAM harmonized CPTAC3 ceb27de7-e54f-4550-8793-52bae5d871fe b8b2768ae76bbd8a94b8e9825b1f23db {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.WGS.N C3N-02160 CCRCC WGS blood_normal CPT0214050002 CPT0214050002.WholeGenome.RP-1303.bam 57260754635 BAM aligned CPTAC3 368e382c-eccd-4741-a8b5-ccc2c1c6877e e7b2df7b541552cd0069355542c29665 {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02160.WGS.N.hg38 C3N-02160 CCRCC WGS blood_normal CPT0214050002 b640cb8c-22a3-464c-933b-c3e629a50151_wgs_gdc_realn.bam 86079125804 BAM harmonized CPTAC3 058de670-783e-48ee-9e7a-fdff23f06bd7 d9252fb0dcd10400c02b48473beae5be {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02160.WGS.T C3N-02160 CCRCC WGS tumor CPT0213960006 CPT0213960006.WholeGenome.RP-1303.bam 68171293125 BAM aligned CPTAC3 33aad6e9-a904-4323-9fe3-20f6e3c464cb e46514fcfcb4e9fa36d3de07b4a94a19 {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor"} -C3N-02160.WGS.T.hg38 C3N-02160 CCRCC WGS tumor CPT0213960006 087767ce-29e8-4d56-b6aa-afe6f226d188_wgs_gdc_realn.bam 101842901175 BAM harmonized CPTAC3 209bdbfd-9b70-4eb0-b310-c7ad95f067ae 320571d01a61b2c510e87419cdd370be {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor"} -C3N-02160.WXS.A C3N-02160 CCRCC WXS tissue_normal CPT0213970006 CPT0213970006.WholeExome.RP-1303.bam 20791384360 BAM aligned CPTAC3 d4390e88-c6ce-464f-8da3-7f5769fa9c86 1b275b428f2f5ede6aa661c09017c52f {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.WXS.A.hg38 C3N-02160 CCRCC WXS tissue_normal CPT0213970006 f7eb4d17-b505-46f4-89f4-da1c5695a5e2_wxs_gdc_realn.bam 28377424598 BAM harmonized CPTAC3 b082a47a-738a-4959-8588-795a9715b42b 9a68b980a1501eb6660340edb3e622e9 {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02160.WXS.N C3N-02160 CCRCC WXS blood_normal CPT0214050002 CPT0214050002.WholeExome.RP-1303.bam 30208734744 BAM aligned CPTAC3 af29d74f-b297-4730-98af-f08fc0109a97 0bdf5145f62d2f1dec7d42bbba0ade13 {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02160.WXS.N.hg38 C3N-02160 CCRCC WXS blood_normal CPT0214050002 b640cb8c-22a3-464c-933b-c3e629a50151_wxs_gdc_realn.bam 40860357709 BAM harmonized CPTAC3 4f9f1627-b55b-4a29-b272-3bf05c38d27a 4f3e08948da87922b6f0fab65be24afc {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02160.WXS.T C3N-02160 CCRCC WXS tumor CPT0213960006 CPT0213960006.WholeExome.RP-1303.bam 24377497024 BAM aligned CPTAC3 c589be15-0177-4508-b401-c8e1d8582e74 1fa1e3298e963906cd7a22a3b84e0aa1 {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor"} -C3N-02160.WXS.T.hg38 C3N-02160 CCRCC WXS tumor CPT0213960006 087767ce-29e8-4d56-b6aa-afe6f226d188_wxs_gdc_realn.bam 35163647952 BAM harmonized CPTAC3 51221f0b-dd38-40fd-8c84-468659eb900e 6bc4094f902028a996b5984159e178e2 {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor"} -C3N-02181.MethArray.Green.T C3N-02181 GBM Methylation_Array tumor CPT0168380006 203027390089_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cd5b6f51-f29a-4362-ac39-1ddc3b8be562 b8eb608ba5100dc8e1ddf1a5d69246e5 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor"} -C3N-02181.MethArray.Red.T C3N-02181 GBM Methylation_Array tumor CPT0168380006 203027390089_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 4d4f3920-d919-47fa-856a-e9a6cc6f4fce c619798bf52e671067a9d03c3d9a8867 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor"} -C3N-02181.miRNA-Seq.S17_L001_R1.T C3N-02181 GBM miRNA-Seq tumor CPT0168380009 181119_UNC31-K00269_0165_AH27WCBBXY_GACGAC_S17_L001_R1_001.unaln.bam 252023080 BAM S17_L001_R1 unaligned CPTAC3 c6e3042e-e0ef-4d5c-95fc-04a9f413ce0d 7915fccc3b7146d195b7fa16a50a2f57 {"aliquot_tag": "ALQ_35048da5", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02181.miRNA-Seq.T.hg38 C3N-02181 GBM miRNA-Seq tumor CPT0168380009 c978dbae-6952-4b3c-932f-eaf03b8c80b8_mirnaseq_gdc_realn.bam 286848612 BAM harmonized CPTAC3 197b8779-3929-4e07-9f19-23e3ef205012 4c153e2109c368fb4f1a18df5c682c65 {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor"} -C3N-02181.RNA-Seq.chimeric.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.chimeric.gdc_realn.bam 42912871 BAM chimeric harmonized CPTAC3 d83cb1c0-4cff-4957-87e0-61e60c1aa925 47c48880739391c278218d9ebeeb8534 {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor"} -C3N-02181.RNA-Seq.genomic.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.genomic.gdc_realn.bam 9332379370 BAM genomic harmonized CPTAC3 0edcbca0-e434-45af-84d3-d13850b051a0 ce5108602bcc92ff7258f4d720e5ed3f {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor"} -C3N-02181.RNA-Seq.S3_L001_R1.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4264542017 FASTQ S3_L001_R1 unaligned CPTAC3 cfb8fa20-a639-42fc-873a-9d07271e3122 be7f8c24345c061b57777f7ca4b1bcf8 {"aliquot_tag": "ALQ_35048da5", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02181.RNA-Seq.S3_L001_R2.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4670211980 FASTQ S3_L001_R2 unaligned CPTAC3 b32e9f2c-4aae-4bd8-bc47-7134bc1bb92c 62bb18a19e1f201121b20d9c0a13b22f {"aliquot_tag": "ALQ_35048da5", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02181.RNA-Seq.transcriptome.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.transcriptome.gdc_realn.bam 11885329706 BAM transcriptome harmonized CPTAC3 e2c3d0fc-a230-43ae-ac13-5277f2bd3de7 4214279281cf8bdaf54eda0cbf78550b {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor"} -C3N-02181.scRNA-Seq.S4_L003_R1.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R1_001.fastq.gz 13201477088 FASTQ S4_L003_R1 unaligned CPTAC3 37025c07-5429-415d-97b7-2146c0dea79d 7975a1e42ea5b6028d136606486f7a2b {"aliquot_tag": "ALQ_52aec059", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02181.scRNA-Seq.S4_L003_R2.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R2_001.fastq.gz 31578941138 FASTQ S4_L003_R2 unaligned CPTAC3 dbc7f1b2-21b1-4506-8c2d-fef4951a0b10 82e73bee1aa0fcff8affe78e57ed2aff {"aliquot_tag": "ALQ_52aec059", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02181.scRNA-Seq.T.hg38 C3N-02181 GBM scRNA-Seq tumor CPT0168380014 possorted_genome_bam.bam 37509207219 BAM harmonized CPTAC3 834eaf46-4552-457c-bd67-b9dfa9161dfa d2a07f4abad92635679a530c69d563d9 {"aliquot_tag": "ALQ_52aec059", "gdc_sample_type": "Primary Tumor"} -C3N-02181.WGS.N C3N-02181 GBM WGS blood_normal CPT0168430002 CPT0168430002.WholeGenome.RP-1303.bam 61662926101 BAM aligned CPTAC3 ddc57c40-b987-4ab8-abcd-3238e31dff72 689a11f1b546d7d392dbc89d22e43694 {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal"} -C3N-02181.WGS.N.hg38 C3N-02181 GBM WGS blood_normal CPT0168430002 c1dac155-9fca-4217-893e-8b02a8e95dd4_wgs_gdc_realn.bam 90545302597 BAM harmonized CPTAC3 cfde6003-aa52-42d0-b12c-ec711668f23b b681c09adbebb5d780462d6bd0858923 {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal"} -C3N-02181.WGS.T C3N-02181 GBM WGS tumor CPT0168380006 CPT0168380006.WholeGenome.RP-1303.bam 63204082007 BAM aligned CPTAC3 f6710fcd-9939-4c1b-a321-ca7614e48ba2 1127701d6e4052f44a7149a0bec181f7 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor"} -C3N-02181.WGS.T.hg38 C3N-02181 GBM WGS tumor CPT0168380006 90b9cda0-892e-4532-a1c5-44df34c0e5a4_wgs_gdc_realn.bam 93689448748 BAM harmonized CPTAC3 80bbd168-8f00-4412-ab15-83603e4abdb6 33c122ab2cade53ef37cb6bf8b023f09 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor"} -C3N-02181.WXS.N C3N-02181 GBM WXS blood_normal CPT0168430002 CPT0168430002.WholeExome.RP-1303.bam 32928218822 BAM aligned CPTAC3 e2f21166-222d-490f-984d-6c136da50b2c b9a102caa35101022083de505c698cad {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal"} -C3N-02181.WXS.N.hg38 C3N-02181 GBM WXS blood_normal CPT0168430002 c1dac155-9fca-4217-893e-8b02a8e95dd4_wxs_gdc_realn.bam 43830549996 BAM harmonized CPTAC3 85738bba-cb76-4625-afbd-72e17c915593 c485f9a7d95ebcbe3661f6e0f1fda638 {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal"} -C3N-02181.WXS.T C3N-02181 GBM WXS tumor CPT0168380006 CPT0168380006.WholeExome.RP-1303.bam 30188644753 BAM aligned CPTAC3 ac3d32e2-2432-417b-a1a3-34207abb8bf0 418631a3d1e8491cd60bd9d26c2e8b9a {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor"} -C3N-02181.WXS.T.hg38 C3N-02181 GBM WXS tumor CPT0168380006 90b9cda0-892e-4532-a1c5-44df34c0e5a4_wxs_gdc_realn.bam 40864241441 BAM harmonized CPTAC3 34380b11-99f1-42de-b77e-bcfb6a36f496 d1207a3b2a751b7b2efd4a2cf182447b {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor"} -C3N-02183.MethArray.Green.T C3N-02183 GBM Methylation_Array tumor CPT0168480006 203028200034_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e5a923a-521e-4d66-9a1d-ae5729304378 47f18de0b646ec8d06dd04651eab6cbd {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor"} -C3N-02183.MethArray.Red.T C3N-02183 GBM Methylation_Array tumor CPT0168480006 203028200034_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 9c9237b2-f9a4-4fda-bc3b-e4e433ca7601 86c3758e93b1c7ca0214dafe4e725df0 {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor"} -C3N-02183.miRNA-Seq.S18_L001_R1.T C3N-02183 GBM miRNA-Seq tumor CPT0168480009 181119_UNC31-K00269_0165_AH27WCBBXY_TAATCG_S18_L001_R1_001.unaln.bam 204768676 BAM S18_L001_R1 unaligned CPTAC3 e5155a5d-7e7a-43b6-82bc-58b503d6aeb4 7f467039c06adffcc8c38b956ba00e0b {"aliquot_tag": "ALQ_2801bd1d", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02183.miRNA-Seq.T.hg38 C3N-02183 GBM miRNA-Seq tumor CPT0168480009 46f07322-3429-4ed4-9a44-3b08c39482f2_mirnaseq_gdc_realn.bam 224040892 BAM harmonized CPTAC3 17e0f6e7-270f-4c22-93c4-590c49a811a7 a8beb220a5f85c9a7b8bae2780699918 {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor"} -C3N-02183.RNA-Seq.chimeric.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.chimeric.gdc_realn.bam 27988826 BAM chimeric harmonized CPTAC3 9df0c459-f17f-41f6-8c6a-647bc725bd79 ef17d467d483742a0a23b606575b256e {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor"} -C3N-02183.RNA-Seq.genomic.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.genomic.gdc_realn.bam 8150404796 BAM genomic harmonized CPTAC3 c74179fd-daf9-4c81-b450-bd69100b4633 8b794f65e68d12ff1f7adc3332175873 {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor"} -C3N-02183.RNA-Seq.S2_L001_R1.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3716036241 FASTQ S2_L001_R1 unaligned CPTAC3 7937d42d-b381-45a1-b45c-935d6359482e 06e065000048f9daad4350c34de19308 {"aliquot_tag": "ALQ_2801bd1d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02183.RNA-Seq.S2_L001_R2.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3806358030 FASTQ S2_L001_R2 unaligned CPTAC3 76ab475c-3258-41fc-ad50-a91680b3cd9e 907afa6f8bd2bfb9d7f3cd311e544f3e {"aliquot_tag": "ALQ_2801bd1d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02183.RNA-Seq.transcriptome.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.transcriptome.gdc_realn.bam 10860856447 BAM transcriptome harmonized CPTAC3 9794528a-98be-4856-a376-6bba9f19bdd1 7e862a7c2ec057177e43f5f1be1bec51 {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor"} -C3N-02183.WGS.N C3N-02183 GBM WGS blood_normal CPT0168540004 CPT0168540004.WholeGenome.RP-1303.bam 53209010684 BAM aligned CPTAC3 c21fa708-fb23-4c08-a5c9-1a8fc9061ae5 8b1ad49713f06760a295e857b71feffe {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02183.WGS.N.hg38 C3N-02183 GBM WGS blood_normal CPT0168540004 ede2c262-e52f-4ba3-a802-058195b89e64_wgs_gdc_realn.bam 78172680973 BAM harmonized CPTAC3 226a2938-6b47-4ad8-a6d0-f7e4eb129a14 0283017417a7502107d0b1109196ae89 {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02183.WGS.T C3N-02183 GBM WGS tumor CPT0168480006 CPT0168480006.WholeGenome.RP-1303.bam 62074141718 BAM aligned CPTAC3 fe2a75f0-f485-40c9-bb7b-a594a9f3fec5 f1f3c2fcba08eb2ed9d84bbac52bf12d {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor"} -C3N-02183.WGS.T.hg38 C3N-02183 GBM WGS tumor CPT0168480006 bd96ecbf-17b9-4dac-8090-05191cf90ee5_wgs_gdc_realn.bam 92015884024 BAM harmonized CPTAC3 54b12602-3d4f-4610-9667-10493d4d84ab f43bd639d08d9afb996df2fa1bf338cb {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor"} -C3N-02183.WXS.N C3N-02183 GBM WXS blood_normal CPT0168540004 CPT0168540004.WholeExome.RP-1303.bam 36830321938 BAM aligned CPTAC3 c5654d45-a6e9-435e-8be3-bc2968631856 aba74343dbb115c84cdd4e01630e0e02 {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02183.WXS.N.hg38 C3N-02183 GBM WXS blood_normal CPT0168540004 ede2c262-e52f-4ba3-a802-058195b89e64_wxs_gdc_realn.bam 50537898593 BAM harmonized CPTAC3 4e29d77c-86c1-43c7-8f95-21ce1fe38320 2dd5e66801e917c49b1678732f3e9f8a {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02183.WXS.T C3N-02183 GBM WXS tumor CPT0168480006 CPT0168480006.WholeExome.RP-1303.bam 21209100825 BAM aligned CPTAC3 ad550efd-d975-4676-b66a-e3a87f42d2f6 b93d14546392dcc9574f5afbba929f19 {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor"} -C3N-02183.WXS.T.hg38 C3N-02183 GBM WXS tumor CPT0168480006 bd96ecbf-17b9-4dac-8090-05191cf90ee5_wxs_gdc_realn.bam 29367689402 BAM harmonized CPTAC3 041d0fdd-8bf4-40f8-b215-0385d5905320 65965d33b489483c6b655cd383619170 {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor"} -C3N-02185.MethArray.Green.T C3N-02185 GBM Methylation_Array tumor CPT0168590006 203027390091_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 83ee9ac7-be0d-4f92-9c83-41433e603b64 140296c3942e5eb12ad2c8920cb7b11d {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor"} -C3N-02185.MethArray.Red.T C3N-02185 GBM Methylation_Array tumor CPT0168590006 203027390091_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 4ac5780f-a9d6-4cc2-a866-ca9ffdf61502 9093e104bcff6a7ae323fb49f576d1b3 {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor"} -C3N-02185.miRNA-Seq.S19_L001_R1.T C3N-02185 GBM miRNA-Seq tumor CPT0168590009 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L001_R1_001.unaln.bam 210363744 BAM S19_L001_R1 unaligned CPTAC3 41215cb6-08bc-48f5-a21a-9823378c3a7b 50e99f0ce03579bad5dfe51af1ab8503 {"aliquot_tag": "ALQ_de3d4708", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02185.miRNA-Seq.T.hg38 C3N-02185 GBM miRNA-Seq tumor CPT0168590009 3bec02b2-5e83-493d-8ec8-61bc1d06456a_mirnaseq_gdc_realn.bam 240134900 BAM harmonized CPTAC3 b4707c2c-df15-4ba2-8362-eb3a8abacbdd dacd2627886254fceccbed114159e04f {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor"} -C3N-02185.RNA-Seq.chimeric.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.chimeric.gdc_realn.bam 32247072 BAM chimeric harmonized CPTAC3 f89dec97-55fe-45c2-9ed5-63336d4bde86 273b5dc03825653df2dd2064124d3655 {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor"} -C3N-02185.RNA-Seq.genomic.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.genomic.gdc_realn.bam 8917268248 BAM genomic harmonized CPTAC3 e3a5e97d-6bb3-4280-9f9f-324ef42985f1 e4a42d7134580bd447f684198510654c {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor"} -C3N-02185.RNA-Seq.S1_L001_R1.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4081098049 FASTQ S1_L001_R1 unaligned CPTAC3 9d2fbbc6-40d1-4832-a3bf-f619f4cdbb71 aa8799909db21e55d05a191f10ad7a41 {"aliquot_tag": "ALQ_de3d4708", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02185.RNA-Seq.S1_L001_R2.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4373203364 FASTQ S1_L001_R2 unaligned CPTAC3 2e1b3952-7b8a-4b7e-b0e8-e79078c3648e 6d0424f24acf343bb24092bb90d3de6a {"aliquot_tag": "ALQ_de3d4708", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02185.RNA-Seq.transcriptome.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.transcriptome.gdc_realn.bam 11343477657 BAM transcriptome harmonized CPTAC3 c0d3f20b-00b0-4dcd-8bd9-b7ff5f37810d 2e439e9dbfffb87bda491af31e800d61 {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor"} -C3N-02185.WGS.N C3N-02185 GBM WGS blood_normal CPT0168650002 CPT0168650002.WholeGenome.RP-1303.bam 54313533743 BAM aligned CPTAC3 d40bd842-0e49-4351-a5fd-b0d587115940 d5d2e9ed0b096a6605d40d51b0fdc6b4 {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02185.WGS.N.hg38 C3N-02185 GBM WGS blood_normal CPT0168650002 ed416ffd-7a75-4a7c-b34c-b0d650cb5115_wgs_gdc_realn.bam 79381413593 BAM harmonized CPTAC3 35c10200-63e3-4aa0-a326-06081c354282 c8340ab7b26d45ec78c88dc283072f22 {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02185.WGS.T C3N-02185 GBM WGS tumor CPT0168590006 CPT0168590006.WholeGenome.RP-1303.bam 62380492645 BAM aligned CPTAC3 58f7f8d5-e115-4044-bb92-3ef3aec3b1ad 64f6b1ab688a11fa9186de56d2a4d085 {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor"} -C3N-02185.WGS.T.hg38 C3N-02185 GBM WGS tumor CPT0168590006 98a99ed8-3078-434b-8734-672dfba4299f_wgs_gdc_realn.bam 91562944421 BAM harmonized CPTAC3 28becd2a-daf1-4ec5-8d0d-7634249c7bd1 9b383dd62d63833c1fbca77f721d726d {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor"} -C3N-02185.WXS.N C3N-02185 GBM WXS blood_normal CPT0168650002 CPT0168650002.WholeExome.RP-1303.bam 40597110082 BAM aligned CPTAC3 fb3674c5-73b2-4712-b17b-66f2ed6cd104 3bb29c8aab8cbc74b26e6abc63ac3ba9 {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02185.WXS.N.hg38 C3N-02185 GBM WXS blood_normal CPT0168650002 ed416ffd-7a75-4a7c-b34c-b0d650cb5115_wxs_gdc_realn.bam 55158082610 BAM harmonized CPTAC3 a2bfc7cd-09b3-4cc2-9db7-31df84db6515 ef444755c44994e3c77678213a6ffb6f {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02185.WXS.T C3N-02185 GBM WXS tumor CPT0168590006 CPT0168590006.WholeExome.RP-1303.bam 23259176811 BAM aligned CPTAC3 d619d029-d2b6-408f-8916-a6e6b83c3c61 d1f45cade4bacec4e5c1382b00d54844 {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor"} -C3N-02185.WXS.T.hg38 C3N-02185 GBM WXS tumor CPT0168590006 98a99ed8-3078-434b-8734-672dfba4299f_wxs_gdc_realn.bam 31637843843 BAM harmonized CPTAC3 3fda89be-769f-495c-ab01-cd42c7c7a4b1 480304057033295d4595b3f7328600da {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor"} -C3N-02186.MethArray.Green.T C3N-02186 GBM Methylation_Array tumor CPT0168720006 203028200101_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 2c4e60cf-207b-4851-b3b3-4bf4c22c169d e7ef206dd17ca4700c60f41e16d0d42f {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor"} -C3N-02186.MethArray.Red.T C3N-02186 GBM Methylation_Array tumor CPT0168720006 203028200101_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 65684d6d-5ab3-4bd4-a790-630304aa9675 87a6126d8f79ad5efd15eb23114d4a8c {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor"} -C3N-02186.miRNA-Seq.S20_L001_R1.T C3N-02186 GBM miRNA-Seq tumor CPT0168720009 181119_UNC31-K00269_0165_AH27WCBBXY_TATAAT_S20_L001_R1_001.unaln.bam 231377643 BAM S20_L001_R1 unaligned CPTAC3 0357425e-fb97-43fd-b72e-80d90db79d9d ada82e2e405c0c9244f92ea9d8b2a780 {"aliquot_tag": "ALQ_e425d712", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02186.miRNA-Seq.T.hg38 C3N-02186 GBM miRNA-Seq tumor CPT0168720009 c10bcd3f-2623-4f9a-8c57-ffc6604243a6_mirnaseq_gdc_realn.bam 258439383 BAM harmonized CPTAC3 775ca33e-a4ad-4732-8b15-c184591e6e91 37cac2520b4924592a3a41ad9d26aa8c {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor"} -C3N-02186.RNA-Seq.chimeric.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.chimeric.gdc_realn.bam 31336797 BAM chimeric harmonized CPTAC3 9abd973a-999e-41e2-9e4f-dc5d13047dda ff652355a6ea9c9b1a2be92027c97059 {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor"} -C3N-02186.RNA-Seq.genomic.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.genomic.gdc_realn.bam 8076652000 BAM genomic harmonized CPTAC3 8c4ac4bb-d991-4855-a7e5-5a19b9c81f53 2647816e4825dea1c6e7269bc3c97b69 {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor"} -C3N-02186.RNA-Seq.S4_L001_R1.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3677947751 FASTQ S4_L001_R1 unaligned CPTAC3 8a653e18-e4d3-4fe6-837e-4eeec9cb6d8b c408310e6e14ed3d4a1d2fd31cfe4c29 {"aliquot_tag": "ALQ_e425d712", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02186.RNA-Seq.S4_L001_R2.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4003134154 FASTQ S4_L001_R2 unaligned CPTAC3 fe54e8ec-05e4-4ce4-9223-7604b3651819 3955614f781ae5cf2b057d535f160c15 {"aliquot_tag": "ALQ_e425d712", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02186.RNA-Seq.transcriptome.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.transcriptome.gdc_realn.bam 10128854833 BAM transcriptome harmonized CPTAC3 539e7626-5bb4-477c-816b-fff0edb4435f 8904c4c3701b66dcf712e98a010b36a0 {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor"} -C3N-02186.WGS.N C3N-02186 GBM WGS blood_normal CPT0168760004 CPT0168760004.WholeGenome.RP-1303.bam 58566308529 BAM aligned CPTAC3 5931a880-12bf-4e57-98c9-f615ec3959b3 b2337bf06a20a1527064b89cb57413d5 {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02186.WGS.N.hg38 C3N-02186 GBM WGS blood_normal CPT0168760004 90be4c44-6629-4db7-99be-e6f26416714d_wgs_gdc_realn.bam 83909668555 BAM harmonized CPTAC3 ee0a4490-3d5d-4690-8bed-a38db3e2c1a3 a8d03aebd598a3931ad8fc84171b89ba {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02186.WGS.T C3N-02186 GBM WGS tumor CPT0168720006 CPT0168720006.WholeGenome.RP-1303.bam 64176788813 BAM aligned CPTAC3 718d432a-4bef-4b44-ba38-c5312a314ed9 efde0582097132e9d44b0777c36a2a38 {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor"} -C3N-02186.WGS.T.hg38 C3N-02186 GBM WGS tumor CPT0168720006 20703356-6eec-4dc7-a380-a6114fcc278f_wgs_gdc_realn.bam 94007956278 BAM harmonized CPTAC3 d2300cd3-70c3-4ac2-90d7-f96368b4d4ba 19a88cd7a17060b057aa4743ed28f096 {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor"} -C3N-02186.WXS.N C3N-02186 GBM WXS blood_normal CPT0168760004 CPT0168760004.WholeExome.RP-1303.bam 34096373855 BAM aligned CPTAC3 867f02c5-af47-448e-b9ef-2e3dc5a67d51 eecb9a30178f55376b5e9d3486ce7bb9 {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02186.WXS.N.hg38 C3N-02186 GBM WXS blood_normal CPT0168760004 90be4c44-6629-4db7-99be-e6f26416714d_wxs_gdc_realn.bam 45795907957 BAM harmonized CPTAC3 43958c7a-d87e-4914-8b52-adacf6828b9d 6cfadd37c891ca0e7a1a7a1729a764aa {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02186.WXS.T C3N-02186 GBM WXS tumor CPT0168720006 CPT0168720006.WholeExome.RP-1303.bam 22585146830 BAM aligned CPTAC3 cc7936cb-a1c8-4166-959c-347d927b8135 afe792245ac9affd16bf19564898138f {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor"} -C3N-02186.WXS.T.hg38 C3N-02186 GBM WXS tumor CPT0168720006 20703356-6eec-4dc7-a380-a6114fcc278f_wxs_gdc_realn.bam 31701022107 BAM harmonized CPTAC3 21d5bbb5-e600-47b1-bb46-eea3c7fcc148 eb8365b944573c0e8f38df03000dcf40 {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor"} -C3N-02188.MethArray.Green.T C3N-02188 GBM Methylation_Array tumor CPT0168830006 203027390049_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e41c949-652d-4535-bf53-1a08b9f66913 c3971efdd2bd1f026bd7f47e53829818 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor"} -C3N-02188.MethArray.Red.T C3N-02188 GBM Methylation_Array tumor CPT0168830006 203027390049_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 662d586b-4848-4a48-aa5c-e7f9b2467e3c 2c52349a1922e2ff287a3d3e85c97bb7 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor"} -C3N-02188.miRNA-Seq.S10_L001_R1.T C3N-02188 GBM miRNA-Seq tumor CPT0168830009 181119_UNC31-K00269_0165_AH27WCBBXY_CATGGC_S10_L001_R1_001.unaln.bam 204819171 BAM S10_L001_R1 unaligned CPTAC3 0f3c49cf-fa85-4c4b-8d12-496f4f006dde c67b2be181ceaa9ca667989ce996941c {"aliquot_tag": "ALQ_28134c77", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02188.miRNA-Seq.T.hg38 C3N-02188 GBM miRNA-Seq tumor CPT0168830009 27e394cc-830b-4c41-8db6-c312ee6e40e0_mirnaseq_gdc_realn.bam 227040901 BAM harmonized CPTAC3 b84a4564-09bc-4005-b71b-1315a55c0a28 358180817b58cb8d5989e415a6176821 {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor"} -C3N-02188.RNA-Seq.chimeric.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.chimeric.gdc_realn.bam 36652642 BAM chimeric harmonized CPTAC3 262e7a3b-afcb-446c-b4b6-30cdf471a6d6 98c196148943dc663a578e8836dba64d {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor"} -C3N-02188.RNA-Seq.genomic.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.genomic.gdc_realn.bam 10342663344 BAM genomic harmonized CPTAC3 884a30fd-a2d0-4ef3-a0d3-3f82c67f68ad c97ce21a9d01240f0b21a6a8556ce7ef {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor"} -C3N-02188.RNA-Seq.S11_L003_R1.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4872445125 FASTQ S11_L003_R1 unaligned CPTAC3 17b19efd-d99c-4431-8975-392be567d955 9d2801672dbdbfe292bc098e3354073c {"aliquot_tag": "ALQ_28134c77", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02188.RNA-Seq.S11_L003_R2.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 5271764250 FASTQ S11_L003_R2 unaligned CPTAC3 9cec104e-e480-4804-a01e-4b3aa2e3b147 8859cf3be99c89e5266aa840c3115789 {"aliquot_tag": "ALQ_28134c77", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02188.RNA-Seq.transcriptome.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.transcriptome.gdc_realn.bam 14177712757 BAM transcriptome harmonized CPTAC3 2e768ccd-1c3f-4618-8a69-8edfb39f0888 7aa6aecdba5b8da1c3c5410d2934346a {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor"} -C3N-02188.scRNA-Seq.S4_L004_R1.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R1_001.fastq.gz 7649283315 FASTQ S4_L004_R1 unaligned CPTAC3 d98e9606-3a55-41ce-a742-013daebff0da 29f2ede89bb12353aea6ac941037099b {"aliquot_tag": "ALQ_4fb9018b", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02188.scRNA-Seq.S4_L004_R2.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R2_001.fastq.gz 18359540278 FASTQ S4_L004_R2 unaligned CPTAC3 60112146-2f56-4df0-ad7e-c8767a6b1e17 3f7c8199ffa5f7cf362f611be42a30ae {"aliquot_tag": "ALQ_4fb9018b", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02188.scRNA-Seq.T.hg38 C3N-02188 GBM scRNA-Seq tumor CPT0168830014 possorted_genome_bam.bam 22969152976 BAM harmonized CPTAC3 a8bb406b-e9be-468c-bd0b-511c327fcc6c d7b3899e426bbb32cab57df17496ed18 {"aliquot_tag": "ALQ_4fb9018b", "gdc_sample_type": "Primary Tumor"} -C3N-02188.WGS.N C3N-02188 GBM WGS blood_normal CPT0168870002 CPT0168870002.WholeGenome.RP-1303.bam 67438684582 BAM aligned CPTAC3 e7fae748-9aad-44b8-a676-87f91c3812be 4d310f44d7e587f6706f8d68be9dde0d {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02188.WGS.N.hg38 C3N-02188 GBM WGS blood_normal CPT0168870002 ea611a56-b305-4dcc-9d4b-620f7ff6410a_wgs_gdc_realn.bam 99011112123 BAM harmonized CPTAC3 462ec60f-d9e1-4cca-91e6-6146d9e12243 885082e5643d4b0fd2febc01cb7b51e3 {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02188.WGS.T C3N-02188 GBM WGS tumor CPT0168830006 CPT0168830006.WholeGenome.RP-1303.bam 59728142886 BAM aligned CPTAC3 e9940759-3543-4d50-ab47-566af6b808dd a47920aed823e5cdd8446d2388c011d3 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor"} -C3N-02188.WGS.T.hg38 C3N-02188 GBM WGS tumor CPT0168830006 2754920b-81c5-4087-8d0a-3d4142cff7c4_wgs_gdc_realn.bam 87025309564 BAM harmonized CPTAC3 b03c3510-17f5-4b92-b8eb-fd72099e47d0 5bb13a8abd8c63db52add8b3673059ea {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor"} -C3N-02188.WXS.N C3N-02188 GBM WXS blood_normal CPT0168870002 CPT0168870002.WholeExome.RP-1303.bam 30506934611 BAM aligned CPTAC3 d30a7e09-a1b6-425d-b9a6-314632d349d4 61ba27190eac786898ca89cc3400ca0e {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02188.WXS.N.hg38 C3N-02188 GBM WXS blood_normal CPT0168870002 ea611a56-b305-4dcc-9d4b-620f7ff6410a_wxs_gdc_realn.bam 40948164131 BAM harmonized CPTAC3 f77f167d-8369-4d86-98af-5ffe055d2236 bc3e46f8a6f5496c0543a484201338a6 {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02188.WXS.T C3N-02188 GBM WXS tumor CPT0168830006 CPT0168830006.WholeExome.RP-1303.bam 22950364158 BAM aligned CPTAC3 10ef9f85-d29f-47e6-8c2f-12aa103ea858 43156d0ef5e6dd70a0fbb007f9c9ea60 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor"} -C3N-02188.WXS.T.hg38 C3N-02188 GBM WXS tumor CPT0168830006 2754920b-81c5-4087-8d0a-3d4142cff7c4_wxs_gdc_realn.bam 30804887938 BAM harmonized CPTAC3 7578da27-5180-454f-9784-1a3f2c3bcde4 5f3b6adf5a2d9382a55e3589a57053d3 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor"} -C3N-02190.MethArray.Green.T C3N-02190 GBM Methylation_Array tumor CPT0205450007 203220070151_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5ff01b53-1c33-42fa-9350-fb51aea4f9a4 0ae74f887d3d86600a38b9acb461141b {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor"} -C3N-02190.MethArray.Red.T C3N-02190 GBM Methylation_Array tumor CPT0205450007 203220070151_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 fccc5f0d-df40-4a3b-9ae9-f8b249f6e492 295eb1300b15b7fdc7807a08c0d4dd55 {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor"} -C3N-02190.miRNA-Seq.S11_L007_R1.T C3N-02190 GBM miRNA-Seq tumor CPT0205450010 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L007_R1_001.unaln.bam 296382712 BAM S11_L007_R1 unaligned CPTAC3 99586c53-31e3-43b7-8f80-d85e00176ca7 b3bdfa4a4989bd9386110f8b77b54e2f {"aliquot_tag": "ALQ_2e63a4cb", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02190.miRNA-Seq.T.hg38 C3N-02190 GBM miRNA-Seq tumor CPT0205450010 552cc1f8-5fa6-42b9-86e2-f175ecb1aac7_mirnaseq_gdc_realn.bam 330048229 BAM harmonized CPTAC3 dcd3a301-0a39-4348-9017-393aa8ff2652 e94f89c481d229477bf5f49d1225a85c {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor"} -C3N-02190.RNA-Seq.chimeric.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.chimeric.gdc_realn.bam 42747058 BAM chimeric harmonized CPTAC3 fe7b1fb5-9713-4a4e-9c7a-387c6ed1118b 97b335a807fbbfeab2a115b2c21ed744 {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor"} -C3N-02190.RNA-Seq.genomic.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.genomic.gdc_realn.bam 9558799532 BAM genomic harmonized CPTAC3 9771cda1-da1f-40d9-bc33-c59012550a36 23c18055db129a561ba76b491c697124 {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor"} -C3N-02190.RNA-Seq.S14_L004_R1.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R1_001.fastq.gz 4577241175 FASTQ S14_L004_R1 unaligned CPTAC3 dff391bb-5ef5-4fe5-b902-a66f7d43af89 c27f8cadc1bfb5c0bb5afb6dd587793f {"aliquot_tag": "ALQ_2e63a4cb", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02190.RNA-Seq.S14_L004_R2.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R2_001.fastq.gz 4780517006 FASTQ S14_L004_R2 unaligned CPTAC3 bf451c95-8a88-4e2c-bd89-2c4911a90a90 cd58234df9468539d384b40e6ea55133 {"aliquot_tag": "ALQ_2e63a4cb", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02190.RNA-Seq.transcriptome.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.transcriptome.gdc_realn.bam 14757680771 BAM transcriptome harmonized CPTAC3 6507a9ec-86f7-4172-80f1-a2a88d0cfa8c 3c2391038e2e4ba32aef6174df047afc {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor"} -C3N-02190.scRNA-Seq.S1_L004_R1.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R1_001.fastq.gz 8605688275 FASTQ S1_L004_R1 unaligned CPTAC3 a0b8f93d-3c1f-4234-88b7-aa9605fba941 053c7569023b9598d13267480e32b4c9 {"aliquot_tag": "ALQ_5e095044", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02190.scRNA-Seq.S1_L004_R2.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R2_001.fastq.gz 18925261781 FASTQ S1_L004_R2 unaligned CPTAC3 d7f6adc2-afc3-47e3-83fb-7110e2e60ef9 06e52eaf9cc7dda9db182ed74b5a6ea5 {"aliquot_tag": "ALQ_5e095044", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02190.scRNA-Seq.T.hg38 C3N-02190 GBM scRNA-Seq tumor CPT0205450015 possorted_genome_bam.bam 21809890384 BAM harmonized CPTAC3 c720f1da-f739-44f0-b577-073daf6f6ba5 3359a3a1d1035c7f8ee3c1b630a9aec2 {"aliquot_tag": "ALQ_5e095044", "gdc_sample_type": "Primary Tumor"} -C3N-02190.WGS.N C3N-02190 GBM WGS blood_normal CPT0205510002 CPT0205510002.WholeGenome.RP-1303.bam 56523101733 BAM aligned CPTAC3 69044463-d458-4dfd-8fa5-77ace6a4da7e 60f6c0aebba70eb143278fdcb1bfc4b0 {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02190.WGS.N.hg38 C3N-02190 GBM WGS blood_normal CPT0205510002 a6e52347-ea57-438b-963b-26d708da3ad1_wgs_gdc_realn.bam 82619204743 BAM harmonized CPTAC3 1907eba9-edc5-45eb-bf07-21627298553b b43ac86a2d62537f73efcf7fd586649b {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02190.WGS.T C3N-02190 GBM WGS tumor CPT0205450007 CPT0205450007.WholeGenome.RP-1303.bam 65614611212 BAM aligned CPTAC3 5e3bdebf-990c-4e85-aea5-c07ddfc1b687 6f55c233c13ac83a24ee190474ee82d5 {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor"} -C3N-02190.WGS.T.hg38 C3N-02190 GBM WGS tumor CPT0205450007 463480cc-d006-46a5-9812-f56652c2c3f0_wgs_gdc_realn.bam 95574824932 BAM harmonized CPTAC3 672fe01c-68fd-470b-b4bb-5ec74c780139 74a0d342b38cd12476a5ccdb4f9230eb {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor"} -C3N-02190.WXS.N C3N-02190 GBM WXS blood_normal CPT0205510002 CPT0205510002.WholeExome.RP-1303.bam 30522709409 BAM aligned CPTAC3 c7f9299f-00d0-4ae3-93e7-0e6545e0cbfc e20c1640e305ff90db073ed3f5427bf6 {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02190.WXS.N.hg38 C3N-02190 GBM WXS blood_normal CPT0205510002 a6e52347-ea57-438b-963b-26d708da3ad1_wxs_gdc_realn.bam 42435431713 BAM harmonized CPTAC3 5421f53d-3c45-4318-a4e0-958472e6f850 8c3337ed8b06371c4a5f27f84a43be30 {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02190.WXS.T C3N-02190 GBM WXS tumor CPT0205450007 CPT0205450007.WholeExome.RP-1303.bam 23235623574 BAM aligned CPTAC3 799669f9-8030-4bca-9067-e18956275328 cb1ab5aaceaa0b5bf4a7ae716ef2afd6 {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor"} -C3N-02190.WXS.T.hg38 C3N-02190 GBM WXS tumor CPT0205450007 463480cc-d006-46a5-9812-f56652c2c3f0_wxs_gdc_realn.bam 32013498335 BAM harmonized CPTAC3 926ba337-5ae7-4ea8-8afb-8736f6183173 2cdcf9f020883755c7ce3c5b49ad08ad {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor"} -C3N-02192.MethArray.Green.T C3N-02192 LUAD Methylation_Array tumor CPT0209620006 203561620087_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2d88c25c-1430-4dbf-b9e7-7b1cb86f523b fdb918ff3a1d8abb08864f957f4712d4 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor"} -C3N-02192.MethArray.Red.T C3N-02192 LUAD Methylation_Array tumor CPT0209620006 203561620087_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 df9fdf9b-40eb-4e15-b237-d0b118bc1a43 44189c10560ba2398c82bad164b917d4 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor"} -C3N-02192.miRNA-Seq.A.hg38 C3N-02192 LUAD miRNA-Seq tissue_normal CPT0209910006 0f763042-4829-4b23-8d32-7e6aa0e78e97_mirnaseq_gdc_realn.bam 159450612 BAM harmonized CPTAC3 181d4717-8d87-49e5-be47-43856f66830e 913f6e6a8c2f022fa44609ac15202ae7 {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02192.miRNA-Seq.S27_L006_R1.A C3N-02192 LUAD miRNA-Seq tissue_normal CPT0209910006 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGGCG_S27_L006_R1_001.unaln.bam 138789821 BAM S27_L006_R1 unaligned CPTAC3 34ff171e-0940-41b6-9492-818bf4b26a84 bbcaeb8287df9ee1e46ce4332400080c {"aliquot_tag": "ALQ_50a5efd5", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02192.miRNA-Seq.S8_L007_R1.T C3N-02192 LUAD miRNA-Seq tumor CPT0209620009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTTGTA_S8_L007_R1_001.unaln.bam 185276226 BAM S8_L007_R1 unaligned CPTAC3 18891f5b-06a0-4ab2-8042-89e811e9be26 478d47a5ad636e619f999e732e02284a {"aliquot_tag": "ALQ_76ec3a41", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02192.miRNA-Seq.T.hg38 C3N-02192 LUAD miRNA-Seq tumor CPT0209620009 9a8c61d5-20a8-48e9-aa92-06ba2a7c595a_mirnaseq_gdc_realn.bam 201692419 BAM harmonized CPTAC3 bcd68a12-8e55-4ff3-88a1-922581fc24b5 9fd9df9e6d6149223f791fd810b4452b {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor"} -C3N-02192.RNA-Seq.chimeric.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.chimeric.gdc_realn.bam 279454314 BAM chimeric harmonized CPTAC3 a68fdb9e-93cc-4c5b-95ac-31096fb7b2da 3d36feec2d69dbffb28402052ab3fb17 {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02192.RNA-Seq.chimeric.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.chimeric.gdc_realn.bam 30039520 BAM chimeric harmonized CPTAC3 f36221b7-ff39-4068-931e-704ececa93e7 767d4c64b64c0e9e77e32e640db1bb11 {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor"} -C3N-02192.RNA-Seq.genomic.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.genomic.gdc_realn.bam 8634090414 BAM genomic harmonized CPTAC3 7b2e23af-e87e-4278-a783-41dc7d1b6e38 c6f8fa0e069a5c7740ee0256d6b69872 {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02192.RNA-Seq.genomic.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.genomic.gdc_realn.bam 10207929457 BAM genomic harmonized CPTAC3 5622461e-3afd-40aa-8d77-0083726b63ff c443ec7aac540bee82d5c17cf41931d0 {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor"} -C3N-02192.RNA-Seq.S20_L005_R1.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R1_001.fastq.gz 3673464858 FASTQ S20_L005_R1 unaligned CPTAC3 9de0693d-f6be-4754-bb22-d139c02c5f7c 78071a5702a67a7892017f3e8bec1228 {"aliquot_tag": "ALQ_50a5efd5", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02192.RNA-Seq.S20_L005_R2.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R2_001.fastq.gz 3766184346 FASTQ S20_L005_R2 unaligned CPTAC3 5d604433-ecb0-4567-a1d1-8039fc933014 b31a5020e3cc591eaf8bd896a9901037 {"aliquot_tag": "ALQ_50a5efd5", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02192.RNA-Seq.S2_L001_R1.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R1_001.fastq.gz 3863188115 FASTQ S2_L001_R1 unaligned CPTAC3 4a5ab6a1-31e3-4570-965d-1ebbea599c26 f8e511aefebc51aacdc0a5d84a29db21 {"aliquot_tag": "ALQ_76ec3a41", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02192.RNA-Seq.S2_L001_R2.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R2_001.fastq.gz 4423984869 FASTQ S2_L001_R2 unaligned CPTAC3 697e98cc-45ff-46b6-ac3f-acd4dc40e15d 367563c059e73ce2d981ae0b300a6202 {"aliquot_tag": "ALQ_76ec3a41", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02192.RNA-Seq.transcriptome.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.transcriptome.gdc_realn.bam 7018897365 BAM transcriptome harmonized CPTAC3 b9e931ea-e70b-495c-ac48-30d90af8a748 2fe83a6dca1d6c2bad9cce07f6891cfa {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02192.RNA-Seq.transcriptome.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.transcriptome.gdc_realn.bam 9096046820 BAM transcriptome harmonized CPTAC3 bea2df46-a452-4d27-b8ce-e48baf12afca e890b56b9b0a0055435527fe56b4e115 {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor"} -C3N-02192.WGS.N C3N-02192 LUAD WGS blood_normal CPT0209970002 CPT0209970002.WholeGenome.RP-1303.bam 78375975724 BAM aligned CPTAC3 6ac9beba-31e1-4cc7-b8c0-3e4be0c016ce 7130bec14302f399cf22378c1ed28182 {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02192.WGS.N.hg38 C3N-02192 LUAD WGS blood_normal CPT0209970002 064c040e-c959-4259-9428-eb9879dc555d_wgs_gdc_realn.bam 114502455639 BAM harmonized CPTAC3 5b51df68-1646-457d-ae4e-c12735f71a5e 3e9e427ef59e4ee27f21857217535c73 {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02192.WGS.T C3N-02192 LUAD WGS tumor CPT0209620006 CPT0209620006.WholeGenome.RP-1303.bam 70862351315 BAM aligned CPTAC3 cad1fa8e-20a6-498e-8861-f8593fbddb84 2b96f6f1b84b20328db2d70a7c6c5286 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor"} -C3N-02192.WGS.T.hg38 C3N-02192 LUAD WGS tumor CPT0209620006 baf3c92a-ffa3-44b4-812a-6c90f5d5dcd7_wgs_gdc_realn.bam 104343694598 BAM harmonized CPTAC3 eb317ac8-699f-421f-bf9d-c1a689e7628a bbdf43951ff9fa695132b1020f301787 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor"} -C3N-02192.WXS.N C3N-02192 LUAD WXS blood_normal CPT0209970002 CPT0209970002.WholeExome.RP-1303.bam 26195976727 BAM aligned CPTAC3 fe62549d-c44e-4610-aac9-cf4893601558 e7d94a05ca59d8eb1ddf6543063a9fbe {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02192.WXS.N.hg38 C3N-02192 LUAD WXS blood_normal CPT0209970002 064c040e-c959-4259-9428-eb9879dc555d_wxs_gdc_realn.bam 36321256630 BAM harmonized CPTAC3 f4e025d4-04a1-4733-9abf-156fa4e2e3ff 5ec6fff1ee2eccfbd15a03ee45f8e3d6 {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02192.WXS.T C3N-02192 LUAD WXS tumor CPT0209620006 CPT0209620006.WholeExome.RP-1303.bam 21046952060 BAM aligned CPTAC3 484541e2-fc58-427f-812c-42bebbad1696 0aa33e7c53a041dc8b22ece2eee84b7a {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor"} -C3N-02192.WXS.T.hg38 C3N-02192 LUAD WXS tumor CPT0209620006 baf3c92a-ffa3-44b4-812a-6c90f5d5dcd7_wxs_gdc_realn.bam 28975367558 BAM harmonized CPTAC3 ee2cf3e8-d7fb-4f04-bc72-a96f16a55765 f9e1bb46c774ffd16e3230d85277b1b3 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor"} -C3N-02193.MethArray.Green.T C3N-02193 LUAD Methylation_Array tumor CPT0210110006 203561620049_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d8a011ee-c1bf-401c-a04c-10070e22dd97 d70a7673406c51ae2859fe958e544919 {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor"} -C3N-02193.MethArray.Red.T C3N-02193 LUAD Methylation_Array tumor CPT0210110006 203561620049_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 e7a2aa3c-9080-4442-a86b-95b84aa1f5ff 2e1ef7f9f28187f5506feeaf4c83161c {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor"} -C3N-02193.miRNA-Seq.A.hg38 C3N-02193 LUAD miRNA-Seq tissue_normal CPT0210140007 2adeb77b-7943-42da-9099-9f81a1ce0223_mirnaseq_gdc_realn.bam 213070576 BAM harmonized CPTAC3 952b980d-7a93-4067-9a04-6156b3641813 b8a3e403c3bdf31dd7778accc5a39b45 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02193.miRNA-Seq.S28_L006_R1.A C3N-02193 LUAD miRNA-Seq tissue_normal CPT0210140007 190722_UNC31-K00269_0234_AH7VGTBBXY_CATGGC_S28_L006_R1_001.unaln.bam 192792797 BAM S28_L006_R1 unaligned CPTAC3 48351abf-2056-4eea-a94b-1665b8c7968e d4a19aced84c367673a8ebb982b517b7 {"aliquot_tag": "ALQ_5a239713", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02193.miRNA-Seq.S9_L007_R1.T C3N-02193 LUAD miRNA-Seq tumor CPT0210110009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTCAA_S9_L007_R1_001.unaln.bam 213163763 BAM S9_L007_R1 unaligned CPTAC3 0d7ed8da-fa16-4ff9-b427-6c9c1d4f2700 4f9365e8a11f42676bfa0193268c264b {"aliquot_tag": "ALQ_757b3564", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02193.miRNA-Seq.T.hg38 C3N-02193 LUAD miRNA-Seq tumor CPT0210110009 cb21ba0e-ce4e-4ac7-bedd-683fc0453bfc_mirnaseq_gdc_realn.bam 238797070 BAM harmonized CPTAC3 977ad99b-f743-42ce-b33e-902ecd18ac7f ab19037a4420714d2e1513bd033efbe8 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor"} -C3N-02193.RNA-Seq.chimeric.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.chimeric.gdc_realn.bam 29326623 BAM chimeric harmonized CPTAC3 ef5209e3-9356-423a-bac2-84b9f605a674 44984c4cf2cdefb1c6ed3ee58f48e025 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02193.RNA-Seq.chimeric.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.chimeric.gdc_realn.bam 29344300 BAM chimeric harmonized CPTAC3 3b97cf53-079c-43c3-960a-a76933b1c235 200bacf87c55a9ff6d5f8e1f612a4d28 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor"} -C3N-02193.RNA-Seq.genomic.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.genomic.gdc_realn.bam 10150552497 BAM genomic harmonized CPTAC3 f492526d-02b1-4cbb-a269-f7a83ef5f031 0e64e918ae77d350def218f87b6b12d3 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02193.RNA-Seq.genomic.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.genomic.gdc_realn.bam 10392541644 BAM genomic harmonized CPTAC3 5248ff7c-548f-4ae4-a26f-3d0f49c47add 392e12c4b939c5044477caaf32dd4bf2 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor"} -C3N-02193.RNA-Seq.S1_L001_R1.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R1_001.fastq.gz 3812760463 FASTQ S1_L001_R1 unaligned CPTAC3 9ce56cba-2011-4c22-a107-4315aebb72b6 508828dd6dcfe9aefd255d49bb78ea14 {"aliquot_tag": "ALQ_757b3564", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02193.RNA-Seq.S1_L001_R2.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R2_001.fastq.gz 4425314745 FASTQ S1_L001_R2 unaligned CPTAC3 086f5206-32a4-4143-9af4-cc87f91ac4e4 fac54a70906d0e774566c3db291ecc87 {"aliquot_tag": "ALQ_757b3564", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02193.RNA-Seq.S3_L001_R1.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R1_001.fastq.gz 3891145669 FASTQ S3_L001_R1 unaligned CPTAC3 08dfb55d-d261-4535-93e4-39823d558f2c 424b17f38e0ddd165ea5b38d6c979ec5 {"aliquot_tag": "ALQ_5a239713", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02193.RNA-Seq.S3_L001_R2.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R2_001.fastq.gz 4376746336 FASTQ S3_L001_R2 unaligned CPTAC3 a8b71541-e1fc-429d-9307-c712076d2694 741508f2fc4307df3d88f831e96e969a {"aliquot_tag": "ALQ_5a239713", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02193.RNA-Seq.transcriptome.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.transcriptome.gdc_realn.bam 8911215835 BAM transcriptome harmonized CPTAC3 5d8df838-3753-4656-8faa-e2cd78454ef0 89c599d872af50f8e485f0bd91a49304 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02193.RNA-Seq.transcriptome.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.transcriptome.gdc_realn.bam 8377524110 BAM transcriptome harmonized CPTAC3 135ec554-b80a-45c0-bf21-77c40e816aff f4ba3b1d8139c1bc9a4919fe1ceb2b58 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor"} -C3N-02193.WGS.N C3N-02193 LUAD WGS blood_normal CPT0210200002 CPT0210200002.WholeGenome.RP-1303.bam 71263705664 BAM aligned CPTAC3 409fde52-52fd-49be-813b-eb86f041dd2e aa8ad7b6c9f06a7c7c98358f147e4f1e {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02193.WGS.N.hg38 C3N-02193 LUAD WGS blood_normal CPT0210200002 3a7962e7-ea07-4bfa-b260-9b9ea7a99801_wgs_gdc_realn.bam 102902097453 BAM harmonized CPTAC3 39e4f98c-3ef6-4a53-bd37-a85336483013 eba54fd283acb77e0da830be021b1eb5 {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02193.WGS.T C3N-02193 LUAD WGS tumor CPT0210110006 CPT0210110006.WholeGenome.RP-1303.bam 68530773458 BAM aligned CPTAC3 642a4fed-9915-4b28-b56c-25e69a59401e 603f00c6f97f122ec64a06241dfe01df {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor"} -C3N-02193.WGS.T.hg38 C3N-02193 LUAD WGS tumor CPT0210110006 d37563b0-b453-4599-9424-36251ed9929f_wgs_gdc_realn.bam 98324066148 BAM harmonized CPTAC3 e1c17851-fef0-41df-bf67-6f2b96cda8f8 fd4d67a8f1054390c3fb3b5f5c6e2a30 {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor"} -C3N-02193.WXS.N C3N-02193 LUAD WXS blood_normal CPT0210200002 CPT0210200002.WholeExome.RP-1303.bam 24693268294 BAM aligned CPTAC3 ac840537-1625-4682-9650-3be1b0047195 585cd50388630a208f86360aed5f1647 {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02193.WXS.N.hg38 C3N-02193 LUAD WXS blood_normal CPT0210200002 3a7962e7-ea07-4bfa-b260-9b9ea7a99801_wxs_gdc_realn.bam 33920856102 BAM harmonized CPTAC3 6bd614a4-31a1-45e4-969c-ff3120d83d75 761e34e6484276e5be37145c1965cc95 {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02193.WXS.T C3N-02193 LUAD WXS tumor CPT0210110006 CPT0210110006.WholeExome.RP-1303.bam 34228571055 BAM aligned CPTAC3 0fc839f1-dbb1-444c-9d00-134464ac8e92 856192fc43e2deab7e006b14c3f98793 {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor"} -C3N-02193.WXS.T.hg38 C3N-02193 LUAD WXS tumor CPT0210110006 d37563b0-b453-4599-9424-36251ed9929f_wxs_gdc_realn.bam 47688182304 BAM harmonized CPTAC3 74159150-12d1-4c0a-8d4d-3f2fb715967d 4103d44bd86f512304601cc3cf4d7a6f {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor"} -C3N-02224.MethArray.Green.A C3N-02224 CCRCC Methylation_Array tissue_normal CPT0214150006 204930630078_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 629dce6e-15f5-4f34-b654-5ae404072eb5 8c3f752fd2d46a58576ff0df79b76191 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.MethArray.Green.T C3N-02224 CCRCC Methylation_Array tumor CPT0214120006 203219670054_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9df9438b-2081-46f5-bc76-adf4715522bc 7a0778024e080aa16d9158efd21a2ba3 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor"} -C3N-02224.MethArray.Red.A C3N-02224 CCRCC Methylation_Array tissue_normal CPT0214150006 204930630078_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 d03ec1d0-3613-4109-9291-3644fd856702 5b2295eec6525926f863ef4e14c36001 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.MethArray.Red.T C3N-02224 CCRCC Methylation_Array tumor CPT0214120006 203219670054_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 8c38a980-4711-49d1-aac4-05130987a2a5 e256bac79399c95bb467411ed4d8d304 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor"} -C3N-02224.miRNA-Seq.A.hg38 C3N-02224 CCRCC miRNA-Seq tissue_normal CPT0214150009 827eeea5-ecc1-42b4-a761-846428719934_mirnaseq_gdc_realn.bam 215086911 BAM harmonized CPTAC3 366c3dd4-df35-42f1-bf9d-79eba8b873e5 96963c86fafbd90a3b1b74918cff68d7 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.miRNA-Seq.S20_L001_R1.T C3N-02224 CCRCC miRNA-Seq tumor CPT0214120009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACGAT_S20_L001_R1_001.unaln.bam 224268926 BAM S20_L001_R1 unaligned CPTAC3 74606d63-cdeb-4c86-a021-8b59d5fdb15b 62c9d1ca36e064c42abb4cf7adb79a8b {"aliquot_tag": "ALQ_c6946ba7", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02224.miRNA-Seq.S25_L004_R1.A C3N-02224 CCRCC miRNA-Seq tissue_normal CPT0214150009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATCACG_S25_L004_R1_001.unaln.bam 194486137 BAM S25_L004_R1 unaligned CPTAC3 0fe7d5b2-55e5-444f-ac8a-198722fbc5f6 535aaf21ec9db525e93e075acd9ba41f {"aliquot_tag": "ALQ_74b4b7b7", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.miRNA-Seq.T.hg38 C3N-02224 CCRCC miRNA-Seq tumor CPT0214120009 89c28432-af9a-4532-ae6f-53235878fbe6_mirnaseq_gdc_realn.bam 254935706 BAM harmonized CPTAC3 4eace275-605d-46fe-a927-579ece9c3702 1a1b2c7e2c3983221e8239cd4166d65f {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor"} -C3N-02224.RNA-Seq.chimeric.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.chimeric.gdc_realn.bam 89635040 BAM chimeric harmonized CPTAC3 7446b72e-a103-4e54-ad26-8dd082c57cde 120cd8f047cabe2888d8f116fdbb7071 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.RNA-Seq.chimeric.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.chimeric.gdc_realn.bam 292527445 BAM chimeric harmonized CPTAC3 994d2d4d-b5df-42dc-a851-6adf610ece41 a58c39e7e7e2b4dcdc143de1801f7835 {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor"} -C3N-02224.RNA-Seq.genomic.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.genomic.gdc_realn.bam 8057378908 BAM genomic harmonized CPTAC3 e02d9628-b76f-49c5-92e8-26035bea98f5 ed0ae046ee27ff2ec294ee73c12f4060 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.RNA-Seq.genomic.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.genomic.gdc_realn.bam 6560070173 BAM genomic harmonized CPTAC3 bba9163c-0186-46f4-ad25-33a52943c26b 45189d29452e6a076e68ff7ee1316008 {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor"} -C3N-02224.RNA-Seq.S21_L006_R1.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3023425861 FASTQ S21_L006_R1 unaligned CPTAC3 f81d9ea9-72a8-419a-8036-be08a8c883cf 2cc866af6d6da3ba4b323eb52e07b08a {"aliquot_tag": "ALQ_c6946ba7", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02224.RNA-Seq.S21_L006_R2.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3278043342 FASTQ S21_L006_R2 unaligned CPTAC3 d3f5e52b-6dce-4796-bf26-e8bcf5489cd4 9f38bfdf5549c2757bdfb41b00fa0ee5 {"aliquot_tag": "ALQ_c6946ba7", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02224.RNA-Seq.S21_L007_R1.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R1_001.fastq.gz 4055737113 FASTQ S21_L007_R1 unaligned CPTAC3 a6afa7e4-48f2-4ea7-999a-415793a08171 be27792928483f42883becfff8609c0f {"aliquot_tag": "ALQ_74b4b7b7", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.RNA-Seq.S21_L007_R2.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R2_001.fastq.gz 3715042125 FASTQ S21_L007_R2 unaligned CPTAC3 ea76370a-5863-4f4c-bfba-7a6be029d5d6 b74e845b5b79be92c9b14aefbf486687 {"aliquot_tag": "ALQ_74b4b7b7", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.RNA-Seq.transcriptome.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.transcriptome.gdc_realn.bam 8496117420 BAM transcriptome harmonized CPTAC3 ec1012d8-7ccc-4e8d-9f19-68e6c14025d6 e49baf0702ded758d1b4688e82954d33 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.RNA-Seq.transcriptome.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.transcriptome.gdc_realn.bam 7739280853 BAM transcriptome harmonized CPTAC3 c40c11cb-e03b-4f04-aac8-42a1722584ca 1ec287bd4259666a04e71926a495ba26 {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor"} -C3N-02224.WGS.A C3N-02224 CCRCC WGS tissue_normal CPT0214150006 CPT0214150006.WholeGenome.RP-1303.bam 64303069433 BAM aligned CPTAC3 b5cc2df9-3572-40be-96f2-7e4e50f0a9d6 1fc491fef3ddf45ab45684f27affff1f {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.WGS.A.hg38 C3N-02224 CCRCC WGS tissue_normal CPT0214150006 8523baa9-3cf1-453a-bcf5-1e010748eccc_wgs_gdc_realn.bam 95656802351 BAM harmonized CPTAC3 ea2742d4-339b-4b7a-8f17-bfd9d77750fd 4db1139943bc371f4249d399a2a70857 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.WGS.N C3N-02224 CCRCC WGS blood_normal CPT0214230002 CPT0214230002.WholeGenome.RP-1303.bam 52756668379 BAM aligned CPTAC3 6d565095-88ea-41da-97c4-a09f9a8d0810 e1c0435d0fe11f6b80b521e994744b0a {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal"} -C3N-02224.WGS.N.hg38 C3N-02224 CCRCC WGS blood_normal CPT0214230002 c75a39b6-5988-4db4-adfe-5a1dacaa1a07_wgs_gdc_realn.bam 76796159738 BAM harmonized CPTAC3 2b72f57e-2302-4435-b23c-253fd248f14d e0bc7f64f1f37be55e63ba63013370c1 {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal"} -C3N-02224.WGS.T C3N-02224 CCRCC WGS tumor CPT0214120006 CPT0214120006.WholeGenome.RP-1303.bam 57010431744 BAM aligned CPTAC3 4a5a91ba-68d1-4b90-93c5-51e8a792a7b5 fea14dbde712af03a033f2a89a591d55 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor"} -C3N-02224.WGS.T.hg38 C3N-02224 CCRCC WGS tumor CPT0214120006 1744f1ce-fd85-4d7f-854b-f733a71592ab_wgs_gdc_realn.bam 83253338051 BAM harmonized CPTAC3 79b54704-9c45-4bc6-89b4-d3b31a54133c 4d43febf239fdc75453ee7779e9441c4 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor"} -C3N-02224.WXS.A C3N-02224 CCRCC WXS tissue_normal CPT0214150006 CPT0214150006.WholeExome.RP-1303.bam 24243377468 BAM aligned CPTAC3 2bc655e7-2bee-4c56-926b-cef197826e9a ade7ce59b13aab3f6fda8e9fc74868d8 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.WXS.A.hg38 C3N-02224 CCRCC WXS tissue_normal CPT0214150006 8523baa9-3cf1-453a-bcf5-1e010748eccc_wxs_gdc_realn.bam 33231141613 BAM harmonized CPTAC3 5c3daf61-98ac-4b89-ac96-4a65bf4b6bcd 12dea12714e17f49420d0f7a2e65074d {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02224.WXS.N C3N-02224 CCRCC WXS blood_normal CPT0214230002 CPT0214230002.WholeExome.RP-1303.bam 25495410257 BAM aligned CPTAC3 f73b998a-504c-46a8-a502-6a413cd1bca3 aca28a0409968de4da997e5e5725e2a9 {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal"} -C3N-02224.WXS.N.hg38 C3N-02224 CCRCC WXS blood_normal CPT0214230002 c75a39b6-5988-4db4-adfe-5a1dacaa1a07_wxs_gdc_realn.bam 34908057913 BAM harmonized CPTAC3 c31e30fb-7dac-47a3-ad72-cc35064fcb96 06cec720ef0797cb5846dd0e1f2862ed {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal"} -C3N-02224.WXS.T C3N-02224 CCRCC WXS tumor CPT0214120006 CPT0214120006.WholeExome.RP-1303.bam 28578851600 BAM aligned CPTAC3 e2995981-20e9-4fbe-8093-b6cd3cd4e3c1 2537658cf2785b84d11b5c8273ed1dee {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor"} -C3N-02224.WXS.T.hg38 C3N-02224 CCRCC WXS tumor CPT0214120006 1744f1ce-fd85-4d7f-854b-f733a71592ab_wxs_gdc_realn.bam 38503708892 BAM harmonized CPTAC3 748636a3-d460-4a82-b749-5cc94c176166 b29196e3453b64a675968dde6a4bb82c {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor"} -C3N-02230.MethArray.Green.A C3N-02230 LUAD Methylation_Array tissue_normal CPT0214330006 203219720211_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f0e6e51f-4be4-4f6b-a1b9-712e0e512c26 f75dcc9b1d54edf3f611a7bc822db2f9 {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.MethArray.Green.T C3N-02230 LUAD Methylation_Array tumor CPT0214290009 203273200155_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 735951d0-78e6-4869-9a41-2d102736f168 0c22767a5025f5eed063d211fe0c2b90 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor"} -C3N-02230.MethArray.Red.A C3N-02230 LUAD Methylation_Array tissue_normal CPT0214330006 203219720211_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 bac50850-c0d3-44bc-a4c5-291535ff5fa1 9364897facfeb6232003474732a21465 {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.MethArray.Red.T C3N-02230 LUAD Methylation_Array tumor CPT0214290009 203273200155_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 d1b0b794-85b5-4da5-8d19-4dca12a2f10e e03fdc9e5862e1fcde4ac84e9119845c {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor"} -C3N-02230.miRNA-Seq.A.hg38 C3N-02230 LUAD miRNA-Seq tissue_normal CPT0214330009 dc3aa98b-bd0c-4524-90c0-c821070aebd1_mirnaseq_gdc_realn.bam 250456100 BAM harmonized CPTAC3 642de1c3-2f39-4620-9063-17b51b23d6f0 54d4fda4cb9525c5e718da7b9633299e {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.miRNA-Seq.S18_L004_R1.A C3N-02230 LUAD miRNA-Seq tissue_normal CPT0214330009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L004_R1_001.unaln.bam 224389800 BAM S18_L004_R1 unaligned CPTAC3 811281bb-c138-47b7-b265-1ecf5a70cf2e 8d862ac800e418ea1e3c01d90af26e76 {"aliquot_tag": "ALQ_b63ce31c", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.miRNA-Seq.S30_L007_R1.T C3N-02230 LUAD miRNA-Seq tumor CPT0214290006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L007_R1_001.unaln.bam 232848664 BAM S30_L007_R1 unaligned CPTAC3 0a5eaeed-6b72-4ca7-b863-a5edc3106578 c61ba5c6ff46de167b52f891a283b369 {"aliquot_tag": "ALQ_a76f3589", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02230.miRNA-Seq.T.hg38 C3N-02230 LUAD miRNA-Seq tumor CPT0214290006 cd6cc107-a802-4ce3-b883-ea7a662ef16a_mirnaseq_gdc_realn.bam 251480031 BAM harmonized CPTAC3 b84ec850-cee3-450d-8c1c-a245d5d8d733 5f7443b0d636b7a146664601413ec0ed {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor"} -C3N-02230.RNA-Seq.chimeric.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.chimeric.gdc_realn.bam 47138486 BAM chimeric harmonized CPTAC3 7849a20f-b265-42c8-9e86-72ff060accdf e8726f6827f185f643fc82d74ad5d02d {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.RNA-Seq.chimeric.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.chimeric.gdc_realn.bam 44352787 BAM chimeric harmonized CPTAC3 77526edc-0905-437a-9cf8-0f4d58418e31 cc7b31b7cd1a8a8fe51f474c824184c3 {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor"} -C3N-02230.RNA-Seq.genomic.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.genomic.gdc_realn.bam 7816325706 BAM genomic harmonized CPTAC3 aabe5f02-c8d9-4c44-80a9-3d455135447a 4803bc5d0782b4f78f7e59f2db00d8fd {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.RNA-Seq.genomic.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.genomic.gdc_realn.bam 8473945011 BAM genomic harmonized CPTAC3 9076a0d3-32b6-4cfc-a755-153ebe972b7c 4cc6a661b6c8bbc2b29b4f41fa77538b {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor"} -C3N-02230.RNA-Seq.S20_L006_R1.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R1_001.fastq.gz 3583343869 FASTQ S20_L006_R1 unaligned CPTAC3 5a8ee235-0c16-4ecc-834c-90a3ebdee4f1 a23cfbde57599ff12b5a8dd04b64c860 {"aliquot_tag": "ALQ_a76f3589", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02230.RNA-Seq.S20_L006_R2.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R2_001.fastq.gz 4025728760 FASTQ S20_L006_R2 unaligned CPTAC3 ce0bfc02-22b9-40b9-b5d5-76ca5390a92f 4979777d794bc011977011a8c16adedb {"aliquot_tag": "ALQ_a76f3589", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02230.RNA-Seq.S9_L003_R1.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R1_001.fastq.gz 3545833130 FASTQ S9_L003_R1 unaligned CPTAC3 fe5e3182-e8d0-4fb4-80de-ccc730cbc497 c93a577c8ea476838482f8e000d2aad8 {"aliquot_tag": "ALQ_b63ce31c", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.RNA-Seq.S9_L003_R2.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R2_001.fastq.gz 3732130630 FASTQ S9_L003_R2 unaligned CPTAC3 b3d5e8f8-aa21-47aa-95ab-be1bd2b346d2 9f38eb8957d0d6095229367512dd5d1b {"aliquot_tag": "ALQ_b63ce31c", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.RNA-Seq.transcriptome.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.transcriptome.gdc_realn.bam 8801447301 BAM transcriptome harmonized CPTAC3 76622706-ac9a-4424-bed0-850b361a8797 46465ec757001320ae86af5d076294f3 {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.RNA-Seq.transcriptome.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.transcriptome.gdc_realn.bam 8883438383 BAM transcriptome harmonized CPTAC3 e8a5724e-b234-4eba-8b86-77596ea256bf d48fcf7146f011c73efbaa4cb48c3eca {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor"} -C3N-02230.WGS.N C3N-02230 LUAD WGS blood_normal CPT0214410002 CPT0214410002.WholeGenome.RP-1303.bam 61512559977 BAM aligned CPTAC3 55f9f52f-abcc-415f-9b30-33a0e5fae374 93831936292e3267cc3db8793aa4cba8 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02230.WGS.N.hg38 C3N-02230 LUAD WGS blood_normal CPT0214410002 0ca57ed0-a023-470f-99a0-c306ca740abc_wgs_gdc_realn.bam 90656504077 BAM harmonized CPTAC3 ddf66698-6201-4fd5-9de4-64ba989609e7 253b3426365aaa7ed9873ae3773aa041 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02230.WGS.T C3N-02230 LUAD WGS tumor CPT0214290009 CPT0214290009.WholeGenome.RP-1303.bam 57204007092 BAM aligned CPTAC3 cfa52a9d-4acc-4d3a-8b11-4c9cee742382 dd0d34afbdf4cccee6eebcc6dae85337 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor"} -C3N-02230.WGS.T.hg38 C3N-02230 LUAD WGS tumor CPT0214290009 00d29d93-0ed6-4160-ac3a-4218412ec190_wgs_gdc_realn.bam 82615723835 BAM harmonized CPTAC3 226f1ce0-3476-4ccb-9a79-4ca61a0e214a a86c37b02eaacfe99db7558e142b7046 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor"} -C3N-02230.WXS.A C3N-02230 LUAD WXS tissue_normal CPT0214330006 CPT0214330006.WholeExome.RP-1303.bam 24517733588 BAM aligned CPTAC3 cc0e6c31-6efb-4ea5-8831-5506323104ab 75612cd30b9c6372a84933f4da2576cb {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.WXS.A.hg38 C3N-02230 LUAD WXS tissue_normal CPT0214330006 0da20a77-7fd6-41a1-beb5-8316b6bbc76a_wxs_gdc_realn.bam 33383897263 BAM harmonized CPTAC3 4763805a-818b-443f-ab8e-b5ec38613000 5a49aec9084a69bc4579e4969d4af2a1 {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02230.WXS.N C3N-02230 LUAD WXS blood_normal CPT0214410002 CPT0214410002.WholeExome.RP-1303.bam 22205821486 BAM aligned CPTAC3 707feb78-b555-487d-875e-a83c948794bf 2171de9b8ac2b52058597f8647d522a8 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02230.WXS.N.hg38 C3N-02230 LUAD WXS blood_normal CPT0214410002 0ca57ed0-a023-470f-99a0-c306ca740abc_wxs_gdc_realn.bam 30435814411 BAM harmonized CPTAC3 1e1dc983-9275-41fe-9e03-951fb0d1dcfa c19eeacdaddeec79bb0d583018299520 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02230.WXS.T C3N-02230 LUAD WXS tumor CPT0214290009 CPT0214290009.WholeExome.RP-1303.bam 24707924773 BAM aligned CPTAC3 0e5f3378-504c-49c4-a05f-614386d2ade9 5b370ed4f0677098b1a1c94946f5b7a6 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor"} -C3N-02230.WXS.T.hg38 C3N-02230 LUAD WXS tumor CPT0214290009 00d29d93-0ed6-4160-ac3a-4218412ec190_wxs_gdc_realn.bam 34299550206 BAM harmonized CPTAC3 8ebdbbd9-2482-4b36-b7f3-6be964775b70 e28d3874c06a00a1e38b4e2862e91074 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor"} -C3N-02234.MethArray.Green.A C3N-02234 LUAD Methylation_Array tissue_normal CPT0214690006 203273200080_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 922db8f3-7edc-4918-ac5b-ed2b49b0612f 8fab2fc8b91b761e8fec38be8a083b7a {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.MethArray.Green.T C3N-02234 LUAD Methylation_Array tumor CPT0214650009 203219640158_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a0f9a72c-5d23-4716-839a-cbf30618abbd 8d5627925b46d459ce5279c2ec88edbe {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor"} -C3N-02234.MethArray.Red.A C3N-02234 LUAD Methylation_Array tissue_normal CPT0214690006 203273200080_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 6e5fc595-837d-45e1-8dd4-9ed01823ed1a 33e35b631702d90dc567f1e556520322 {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.MethArray.Red.T C3N-02234 LUAD Methylation_Array tumor CPT0214650009 203219640158_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3ed60156-df5b-4484-890f-f78cf8fd6d23 bbd7fd4502d39f7c58f100cac50634f0 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor"} -C3N-02234.miRNA-Seq.A.hg38 C3N-02234 LUAD miRNA-Seq tissue_normal CPT0214690009 b5288be2-a09b-4705-a8c5-b81f02432ffa_mirnaseq_gdc_realn.bam 178754100 BAM harmonized CPTAC3 5750c618-aa3d-4331-bf46-f4fe5429589d aca987383c747ba2445dfa5959810bad {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.miRNA-Seq.S19_L004_R1.A C3N-02234 LUAD miRNA-Seq tissue_normal CPT0214690009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L004_R1_001.unaln.bam 163927812 BAM S19_L004_R1 unaligned CPTAC3 121c45eb-1ff1-4c18-8265-d12ede42383a 98a3ee9a791d32b0f2ebf7df699574cb {"aliquot_tag": "ALQ_ac416a0e", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.miRNA-Seq.S22_L007_R1.T C3N-02234 LUAD miRNA-Seq tumor CPT0214650006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAAAAG_S22_L007_R1_001.unaln.bam 260084856 BAM S22_L007_R1 unaligned CPTAC3 7d2868f9-9e70-4998-ae20-1cf034e606e1 cd3c1517e0c2569d8041d8b4c7a75c85 {"aliquot_tag": "ALQ_f90e9a9e", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02234.miRNA-Seq.T.hg38 C3N-02234 LUAD miRNA-Seq tumor CPT0214650006 02bb5bc8-7889-46a7-9113-84f69a337a64_mirnaseq_gdc_realn.bam 283345623 BAM harmonized CPTAC3 0eb8c77a-9cde-4293-bc7c-060639471393 72908d635a34233b267a54d28a0863e4 {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor"} -C3N-02234.RNA-Seq.chimeric.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.chimeric.gdc_realn.bam 36262698 BAM chimeric harmonized CPTAC3 cd54dfb5-01af-4d96-9eaa-e647e48daa1d 11a5662f3ed2b24e24cdfc7770221706 {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.RNA-Seq.chimeric.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.chimeric.gdc_realn.bam 52397823 BAM chimeric harmonized CPTAC3 9efd5106-9cf3-40c4-aafe-071ce91fc0c4 fca55abbb0755e5509cf5ad3e701934c {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor"} -C3N-02234.RNA-Seq.genomic.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.genomic.gdc_realn.bam 7293590106 BAM genomic harmonized CPTAC3 060bfeae-e166-458c-8180-39c11cc6d134 45b6924e20b28f368d6d0d215cb837fd {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.RNA-Seq.genomic.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.genomic.gdc_realn.bam 10851062794 BAM genomic harmonized CPTAC3 6302768d-195c-46d6-8bd1-682c876d52ff 27addf115bd7c336883e84bb89b06b63 {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor"} -C3N-02234.RNA-Seq.S11_L003_R1.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R1_001.fastq.gz 3516106052 FASTQ S11_L003_R1 unaligned CPTAC3 4a6243fe-d07c-4b4c-a535-b8d2fcc0ca8e 39b5ffee73996ea864eea2359cf4074e {"aliquot_tag": "ALQ_ac416a0e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.RNA-Seq.S11_L003_R2.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R2_001.fastq.gz 3526251602 FASTQ S11_L003_R2 unaligned CPTAC3 b0d03a2f-f12e-485b-a75c-3616eaf5e300 58396b03ab7d5d67370c37c1af56abd7 {"aliquot_tag": "ALQ_ac416a0e", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.RNA-Seq.S24_L008_R1.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R1_001.fastq.gz 4822647499 FASTQ S24_L008_R1 unaligned CPTAC3 d8d65877-975f-41b9-9cad-765a66ee833b c1c0adfe4d60b930fff512931822da48 {"aliquot_tag": "ALQ_f90e9a9e", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02234.RNA-Seq.S24_L008_R2.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R2_001.fastq.gz 5178574775 FASTQ S24_L008_R2 unaligned CPTAC3 b4a027e3-051a-4c29-abad-353feacb037f bb8ebdbdff347dc0cfc261a4cf34e185 {"aliquot_tag": "ALQ_f90e9a9e", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02234.RNA-Seq.transcriptome.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.transcriptome.gdc_realn.bam 8191564453 BAM transcriptome harmonized CPTAC3 45f05bf1-6dc8-4fdd-a95c-453860328810 3ea49380cfa6c496578ebafb67195221 {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.RNA-Seq.transcriptome.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.transcriptome.gdc_realn.bam 12992602438 BAM transcriptome harmonized CPTAC3 56b1eaf0-cd86-4109-a239-dd7e6401ddd0 312a6df0ad5fe4f01a20e7b966d0ff82 {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor"} -C3N-02234.WGS.N C3N-02234 LUAD WGS blood_normal CPT0214770002 CPT0214770002.WholeGenome.RP-1303.bam 64248195161 BAM aligned CPTAC3 49dfba8f-4dbd-4a0d-b430-136ca38f26e1 acaefb05946798f203134821b11e8798 {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal"} -C3N-02234.WGS.N.hg38 C3N-02234 LUAD WGS blood_normal CPT0214770002 6838033f-fe05-4921-b81c-a2b133e8af47_wgs_gdc_realn.bam 95179674878 BAM harmonized CPTAC3 255c1318-cee3-4bdf-80aa-a707cda68799 908fc7a95123189aa25dcad61aa91476 {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal"} -C3N-02234.WGS.T C3N-02234 LUAD WGS tumor CPT0214650009 CPT0214650009.WholeGenome.RP-1303.bam 58947993796 BAM aligned CPTAC3 4fcdb262-8789-4088-aaf7-3efed8935c8d 93f61d9afb685020e512e2a676d309b8 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor"} -C3N-02234.WGS.T.hg38 C3N-02234 LUAD WGS tumor CPT0214650009 9160a210-877e-4a7c-a7d4-88c589c29176_wgs_gdc_realn.bam 86486300371 BAM harmonized CPTAC3 ff131295-7519-4192-9d39-410c1a193eb6 d7c4521f73b0b755418110df83ac7571 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor"} -C3N-02234.WXS.A C3N-02234 LUAD WXS tissue_normal CPT0214690006 CPT0214690006.WholeExome.RP-1303.bam 32344950030 BAM aligned CPTAC3 92a6af4e-4211-485e-a73e-8157a9fef3e3 5eba979924d1e46bc8b5c146077d7646 {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.WXS.A.hg38 C3N-02234 LUAD WXS tissue_normal CPT0214690006 36200093-4dae-480b-83ea-6551b84350d3_wxs_gdc_realn.bam 45334134204 BAM harmonized CPTAC3 16648f35-f484-402a-900d-90979fb6c635 f3fc314d58eec22bbf79b3b1f5f0e1a4 {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02234.WXS.N C3N-02234 LUAD WXS blood_normal CPT0214770002 CPT0214770002.WholeExome.RP-1303.bam 29101750767 BAM aligned CPTAC3 5306639f-575f-40d9-ab1a-2880e66a56a5 963b66f7a48e0aa39e8aba9c1bcb56e5 {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal"} -C3N-02234.WXS.N.hg38 C3N-02234 LUAD WXS blood_normal CPT0214770002 6838033f-fe05-4921-b81c-a2b133e8af47_wxs_gdc_realn.bam 39563795202 BAM harmonized CPTAC3 96b5390c-ddd0-4735-95c7-fa0fb022a836 e16ff0e93acdc9f6a47e0841260c5a6d {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal"} -C3N-02234.WXS.T C3N-02234 LUAD WXS tumor CPT0214650009 CPT0214650009.WholeExome.RP-1303.bam 25466558034 BAM aligned CPTAC3 92f5b7f4-6df1-40b7-b8d5-04649ceaf48f 76cc7e0ac4e0ff18b506912ed036bcbb {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor"} -C3N-02234.WXS.T.hg38 C3N-02234 LUAD WXS tumor CPT0214650009 9160a210-877e-4a7c-a7d4-88c589c29176_wxs_gdc_realn.bam 35244875264 BAM harmonized CPTAC3 888a2b96-6b38-40cc-8483-1e13164b8b2e a16008a8da23a995064573aff8408162 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor"} -C3N-02237.MethArray.Green.A C3N-02237 LUAD Methylation_Array tissue_normal CPT0214870006 203219640068_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f7c47d68-6d95-441c-aea3-8cce2a6c654a 2d4378d3ca3ae6ebe3bc99edfa381891 {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.MethArray.Green.T C3N-02237 LUAD Methylation_Array tumor CPT0214850009 203219670118_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f911b300-a703-4c9b-9df0-6d8509cfd36d 5e8863936646e99a25891341b44c3fff {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor"} -C3N-02237.MethArray.Red.A C3N-02237 LUAD Methylation_Array tissue_normal CPT0214870006 203219640068_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 4de800ed-78cc-43a6-8cb9-aebd430c99ed ed672ac19599287fd54c2d4708ed86d9 {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.MethArray.Red.T C3N-02237 LUAD Methylation_Array tumor CPT0214850009 203219670118_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 91c4989c-cdd5-49fe-9c0a-a925bd76ee9a 2f6019830c4441a3a6b297f604cc036b {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor"} -C3N-02237.miRNA-Seq.A.hg38 C3N-02237 LUAD miRNA-Seq tissue_normal CPT0214870009 85443e0a-0303-4be2-a95c-8315dbff2564_mirnaseq_gdc_realn.bam 270961789 BAM harmonized CPTAC3 914f712d-949c-4b87-b8ed-847799585b35 d3b4a84a5170df53f84459bee05c24a5 {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.miRNA-Seq.S22_L005_R1.A C3N-02237 LUAD miRNA-Seq tissue_normal CPT0214870009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAAAAG_S22_L005_R1_001.unaln.bam 242985019 BAM S22_L005_R1 unaligned CPTAC3 e88b1e33-a831-440e-9891-73de32f3f315 354f424b6ae2bc6c67c63fd4cbe19475 {"aliquot_tag": "ALQ_297bb51f", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.miRNA-Seq.S31_L007_R1.T C3N-02237 LUAD miRNA-Seq tumor CPT0214850006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L007_R1_001.unaln.bam 250449063 BAM S31_L007_R1 unaligned CPTAC3 02da7fe9-e41e-4565-89be-e4b6e67b6c5d b45695ccc757c40ba93659b9374125f2 {"aliquot_tag": "ALQ_c304fbee", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02237.miRNA-Seq.T.hg38 C3N-02237 LUAD miRNA-Seq tumor CPT0214850006 b5e3da67-3fc9-45b1-ad88-f8f2a5922504_mirnaseq_gdc_realn.bam 280042325 BAM harmonized CPTAC3 8bfae102-6f17-4766-a653-787f12f88192 d0d8bd88b95db0ce8ae0fb2269812dec {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor"} -C3N-02237.RNA-Seq.chimeric.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.chimeric.gdc_realn.bam 28983096 BAM chimeric harmonized CPTAC3 6716a8ab-f524-4357-bd0f-143361bb04f9 b869ab13cc5b2245d02d97ebacb67c0e {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.RNA-Seq.chimeric.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.chimeric.gdc_realn.bam 43819249 BAM chimeric harmonized CPTAC3 39f7ef15-8059-4d2c-bb0d-fefbdc9b0a04 5636ac2b1035598b9559b3de80ecbc76 {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor"} -C3N-02237.RNA-Seq.genomic.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.genomic.gdc_realn.bam 7010441550 BAM genomic harmonized CPTAC3 2f4fb183-06ad-4217-9116-1bdfadb48070 abfe5f0b395aea8ed7bdc67e9dfd2854 {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.RNA-Seq.genomic.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.genomic.gdc_realn.bam 10609456850 BAM genomic harmonized CPTAC3 135b914c-5a52-4307-9729-b17d4a295f18 0ae02d648b1225263b06a820c94ac67d {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor"} -C3N-02237.RNA-Seq.S20_L005_R1.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R1_001.fastq.gz 3173490335 FASTQ S20_L005_R1 unaligned CPTAC3 694de9e3-b42e-4ede-a897-d7343fec5ba7 b3ea96c2bed3bdd6bdb4d6bf7711a64a {"aliquot_tag": "ALQ_297bb51f", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.RNA-Seq.S20_L005_R2.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R2_001.fastq.gz 3261569211 FASTQ S20_L005_R2 unaligned CPTAC3 7548401e-d472-4466-8b44-75e0fac2d182 91f8ceafb0f478906ab184f31598bdf5 {"aliquot_tag": "ALQ_297bb51f", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.RNA-Seq.S3_L001_R1.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4145298042 FASTQ S3_L001_R1 unaligned CPTAC3 887287bb-d678-44ff-853b-8cbf65ef6c06 0f55cefea5e9620ba195c98a1cd23932 {"aliquot_tag": "ALQ_c304fbee", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02237.RNA-Seq.S3_L001_R2.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4554668625 FASTQ S3_L001_R2 unaligned CPTAC3 86e384ef-8b7b-4be6-b4f6-d0a2b9451c11 622681ed03094eea86670a84d3f78a9a {"aliquot_tag": "ALQ_c304fbee", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02237.RNA-Seq.transcriptome.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.transcriptome.gdc_realn.bam 8222068577 BAM transcriptome harmonized CPTAC3 ff8f5c81-343e-40fe-a4d6-b5f21988bbd4 fa04f90aa72260915010ad78490c74c6 {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.RNA-Seq.transcriptome.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.transcriptome.gdc_realn.bam 10726415577 BAM transcriptome harmonized CPTAC3 abd12a9b-3b3d-41b0-aa53-22a704b52a39 5e37a71f7e6c311c6b6bf355ef72b49a {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor"} -C3N-02237.WGS.N C3N-02237 LUAD WGS blood_normal CPT0214950002 CPT0214950002.WholeGenome.RP-1303.bam 66258961744 BAM aligned CPTAC3 46552bba-49e0-456d-aaa1-6de480c7bd9b 2fd33721068803d347946318c7d442b9 {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal"} -C3N-02237.WGS.N.hg38 C3N-02237 LUAD WGS blood_normal CPT0214950002 2b7774ec-ce17-443d-9dc1-b87fa63e7c6c_wgs_gdc_realn.bam 98947404000 BAM harmonized CPTAC3 5bad7877-9282-4204-b341-5ae262074565 b7058561262f4b4b5621ea8e7203583b {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal"} -C3N-02237.WGS.T C3N-02237 LUAD WGS tumor CPT0214850009 CPT0214850009.WholeGenome.RP-1303.bam 60980293132 BAM aligned CPTAC3 321d69bd-6a56-4f18-8c20-5c3fd6be132c 8c9e453a81a5dd2c74eb4d8bd5b4e5d5 {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor"} -C3N-02237.WGS.T.hg38 C3N-02237 LUAD WGS tumor CPT0214850009 62956bee-d2b1-480c-b0fd-acbb69a295a1_wgs_gdc_realn.bam 90222132682 BAM harmonized CPTAC3 382fc845-40fe-4581-b0b3-b84875b74283 d01113b0ece2c3e42be95aa76edc0502 {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor"} -C3N-02237.WXS.A C3N-02237 LUAD WXS tissue_normal CPT0214870006 CPT0214870006.WholeExome.RP-1303.bam 25680984217 BAM aligned CPTAC3 49502ed3-ed93-4465-b05b-81d22c7049c2 558c0dae5fb607f105c9585af163f7e2 {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.WXS.A.hg38 C3N-02237 LUAD WXS tissue_normal CPT0214870006 66c29208-31f9-4b24-8256-cf29ab981393_wxs_gdc_realn.bam 35647327765 BAM harmonized CPTAC3 6607cc80-55bf-4425-b285-c7a6301d44f9 80d920e4106094d4427e0c464d2b7eeb {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02237.WXS.N C3N-02237 LUAD WXS blood_normal CPT0214950002 CPT0214950002.WholeExome.RP-1303.bam 32187589752 BAM aligned CPTAC3 103ebfef-41f0-4221-9af2-b4f38951ad26 6f775bb6c1292d54cd22c286350d32f9 {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal"} -C3N-02237.WXS.N.hg38 C3N-02237 LUAD WXS blood_normal CPT0214950002 2b7774ec-ce17-443d-9dc1-b87fa63e7c6c_wxs_gdc_realn.bam 44647860255 BAM harmonized CPTAC3 4959a093-6ccb-4ae3-ae17-1e988e67f35d 4fa294019c7c647b23580e0782586697 {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal"} -C3N-02237.WXS.T C3N-02237 LUAD WXS tumor CPT0214850009 CPT0214850009.WholeExome.RP-1303.bam 21615589371 BAM aligned CPTAC3 77a19873-e4a4-44df-a374-ef6a068ab40c 98ca79e9f20e44ddaaac6a2eacecd9c6 {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor"} -C3N-02237.WXS.T.hg38 C3N-02237 LUAD WXS tumor CPT0214850009 62956bee-d2b1-480c-b0fd-acbb69a295a1_wxs_gdc_realn.bam 30200808075 BAM harmonized CPTAC3 933a7fd7-42d2-4717-946f-7c0dfe7d9b5a d337822f8aec1b96fd650ca3330ce14c {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor"} -C3N-02240.MethArray.Green.A C3N-02240 LUAD Methylation_Array tissue_normal CPT0215230006 203219650165_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0b2be5f9-3ca5-4080-afc3-c141af2dff9a d630d47803176a93a9f4a38fa3cb4796 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.MethArray.Green.T C3N-02240 LUAD Methylation_Array tumor CPT0215210009 203219670141_R03C01_Grn.idat 13676218 IDAT Green NA CPTAC3 60338b6c-2504-4176-b4dc-575a7e8c3af4 02c3038b2192678b6b5290891c6c9900 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor"} -C3N-02240.MethArray.Red.A C3N-02240 LUAD Methylation_Array tissue_normal CPT0215230006 203219650165_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 e62935e9-f1fd-4dbd-be2c-7d56938556ed 888896c6ed15d3f226d84498df84cc83 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.MethArray.Red.T C3N-02240 LUAD Methylation_Array tumor CPT0215210009 203219670141_R03C01_Red.idat 13676218 IDAT Red NA CPTAC3 a84d19b8-3f5a-4cd6-8088-1307575b39bf 96dca5510d5d898f4357c4e51f0f2569 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor"} -C3N-02240.miRNA-Seq.A.hg38 C3N-02240 LUAD miRNA-Seq tissue_normal CPT0215230009 24cb48ed-97cf-4f19-8668-37c8b06b52f9_mirnaseq_gdc_realn.bam 257206873 BAM harmonized CPTAC3 75b2b73e-de62-47ef-b0d2-78e97763001c b6fcf409c37cbd9e4f88e51daccf41e8 {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.miRNA-Seq.S31_L005_R1.A C3N-02240 LUAD miRNA-Seq tissue_normal CPT0215230009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L005_R1_001.unaln.bam 232002064 BAM S31_L005_R1 unaligned CPTAC3 77727bd7-0e6a-4258-a7a0-b559dd0fbcad 053d959c1423bd36bc376d5af28ed89f {"aliquot_tag": "ALQ_db173b0d", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.miRNA-Seq.S32_L007_R1.T C3N-02240 LUAD miRNA-Seq tumor CPT0215210006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L007_R1_001.unaln.bam 236529473 BAM S32_L007_R1 unaligned CPTAC3 a0e02d30-742a-42cc-84ed-a4ad7e47795c c74ec1e924944be4d302cba9b37c663f {"aliquot_tag": "ALQ_316875fc", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02240.miRNA-Seq.T.hg38 C3N-02240 LUAD miRNA-Seq tumor CPT0215210006 5fd95431-d397-4566-aba7-85e7b725b0f4_mirnaseq_gdc_realn.bam 257499440 BAM harmonized CPTAC3 9ea0c535-3300-4bd9-812b-b8ebf5868841 9717589ad6eefc6c2ad53cc01685e882 {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor"} -C3N-02240.RNA-Seq.chimeric.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.chimeric.gdc_realn.bam 37094708 BAM chimeric harmonized CPTAC3 65a25fb7-4887-46d8-abaa-0d49f41172f1 42437e4f3b1d6b4df5f9ccdedf73cee2 {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.RNA-Seq.chimeric.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.chimeric.gdc_realn.bam 46471924 BAM chimeric harmonized CPTAC3 b0744ba4-0d3f-4b98-996a-9d737b3f2404 caac02d1618c3c972631fc1b990cde1b {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor"} -C3N-02240.RNA-Seq.genomic.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.genomic.gdc_realn.bam 8776218197 BAM genomic harmonized CPTAC3 2ebbc498-3b9e-4bcb-bec0-d2368dcc4895 d327bbd39dc163620e3bc307cab68e7d {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.RNA-Seq.genomic.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.genomic.gdc_realn.bam 10112960694 BAM genomic harmonized CPTAC3 1c37a978-06ca-46eb-9d55-4933c73894bc 4050bc29dec1b4b58008d2e22813f337 {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor"} -C3N-02240.RNA-Seq.S23_L006_R1.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 4000778700 FASTQ S23_L006_R1 unaligned CPTAC3 86b9c3b7-2f71-4b57-8630-96d33bfcb9f1 328f2ca1e1b65a53b2c69cde66a05d4b {"aliquot_tag": "ALQ_db173b0d", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.RNA-Seq.S23_L006_R2.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4291228392 FASTQ S23_L006_R2 unaligned CPTAC3 f70ff136-b424-455d-a3f1-20b768878332 24ca4d23534788eb1a8e0ee53b8e149d {"aliquot_tag": "ALQ_db173b0d", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.RNA-Seq.S2_L001_R1.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 4259265998 FASTQ S2_L001_R1 unaligned CPTAC3 8937d276-3c0e-41d5-bdf7-1fced441027f 93871aed801e11740ae96b4ac0ed78f3 {"aliquot_tag": "ALQ_316875fc", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02240.RNA-Seq.S2_L001_R2.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4743230676 FASTQ S2_L001_R2 unaligned CPTAC3 9c59f9b1-b728-45eb-93af-e895ae90be4b 932c8bf36863d3fb052333540fa772e0 {"aliquot_tag": "ALQ_316875fc", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02240.RNA-Seq.transcriptome.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.transcriptome.gdc_realn.bam 10497477501 BAM transcriptome harmonized CPTAC3 a0261caf-c6ae-44c8-99ad-685f9d0f4119 09581b40d6fa21e441c8a8f64b53f842 {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.RNA-Seq.transcriptome.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.transcriptome.gdc_realn.bam 11840258562 BAM transcriptome harmonized CPTAC3 e30be0e2-9c62-48d3-b0eb-aa61b51637b6 ec628b14e2756eadf35fd0eb370de9db {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor"} -C3N-02240.WGS.N C3N-02240 LUAD WGS blood_normal CPT0215310002 CPT0215310002.WholeGenome.RP-1303.bam 59855236740 BAM aligned CPTAC3 5216c99a-d97a-4904-8ec6-1ff6fe1e6c0c 53a82779c1cf43ca01703366771fe841 {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal"} -C3N-02240.WGS.N.hg38 C3N-02240 LUAD WGS blood_normal CPT0215310002 0d11ebdf-9907-4aff-b8a5-97e754c0caeb_wgs_gdc_realn.bam 87600838568 BAM harmonized CPTAC3 dd21ed09-9849-40a8-b0f9-2ad12e71cefb 6298c6df3be976af6dd339557cd90a7c {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal"} -C3N-02240.WGS.T C3N-02240 LUAD WGS tumor CPT0215210009 CPT0215210009.WholeGenome.RP-1303.bam 56594142198 BAM aligned CPTAC3 6a22cc53-1e73-4460-b4a5-623e675b4dee 751d8f4329b3d7864e0a0d03051e9ca3 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor"} -C3N-02240.WGS.T.hg38 C3N-02240 LUAD WGS tumor CPT0215210009 9e66559d-15d6-4d45-ad2e-9f17e274f71c_wgs_gdc_realn.bam 81847858316 BAM harmonized CPTAC3 3ace64b3-35d5-4910-aded-b0a2038e613d 3159c4e9a69e4d5d2906e4564e11f01e {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor"} -C3N-02240.WXS.A C3N-02240 LUAD WXS tissue_normal CPT0215230006 CPT0215230006.WholeExome.RP-1303.bam 36880878983 BAM aligned CPTAC3 7a278d78-0191-4538-8ba7-28a2b26302ab 285ebeb7838c9a0b47c5e0964c6b8c64 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.WXS.A.hg38 C3N-02240 LUAD WXS tissue_normal CPT0215230006 edd38d60-98cb-48f5-a8be-59d670a123f8_wxs_gdc_realn.bam 50824143687 BAM harmonized CPTAC3 ac60b03d-d0f5-4f38-b89d-32474709098f d9aa09b9f9342b1a7569cd52413d04c6 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02240.WXS.N C3N-02240 LUAD WXS blood_normal CPT0215310002 CPT0215310002.WholeExome.RP-1303.bam 23109485521 BAM aligned CPTAC3 2d149ebc-4614-4b6b-898f-a13dfaeff210 5b4fb9592cf35af6933755fbe780b509 {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal"} -C3N-02240.WXS.N.hg38 C3N-02240 LUAD WXS blood_normal CPT0215310002 0d11ebdf-9907-4aff-b8a5-97e754c0caeb_wxs_gdc_realn.bam 31526382325 BAM harmonized CPTAC3 bbce8743-b197-4cd9-a30a-7ad27925e1a3 a169b17eedb9214874fb930ddc61d6db {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal"} -C3N-02240.WXS.T C3N-02240 LUAD WXS tumor CPT0215210009 CPT0215210009.WholeExome.RP-1303.bam 21890840879 BAM aligned CPTAC3 eaade8c8-5c10-44a3-b31e-a4cc5c24af87 b0c27f3accfdd8090c7229b6d488ed32 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor"} -C3N-02240.WXS.T.hg38 C3N-02240 LUAD WXS tumor CPT0215210009 9e66559d-15d6-4d45-ad2e-9f17e274f71c_wxs_gdc_realn.bam 30331717008 BAM harmonized CPTAC3 679cbea5-c38e-4b14-9956-0d02ff2fb588 9e86214c53429bb21a9c9de588211cfe {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor"} -C3N-02242.MethArray.Green.A C3N-02242 LUAD Methylation_Array tissue_normal CPT0215410006 203219750071_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 41613235-f144-4370-b59d-5cf47c23d52f 5fa2f4dbc9ddbceca32baf6afeabe024 {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.MethArray.Green.T C3N-02242 LUAD Methylation_Array tumor CPT0215400009 203219650177_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 49ac69cf-52b8-4282-bab7-36cb7ab785a5 0f8d9bf2dd11cd46d466c7803a718213 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor"} -C3N-02242.MethArray.Red.A C3N-02242 LUAD Methylation_Array tissue_normal CPT0215410006 203219750071_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 0220fbe2-4081-4b6a-8ddd-1f00497bc0a4 d713834745b662396f206b1dc92dc6e8 {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.MethArray.Red.T C3N-02242 LUAD Methylation_Array tumor CPT0215400009 203219650177_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 6aadc82a-4843-4a10-ac56-44b3fcc21e46 a8059b8c06fdd3a603cc67af3b616b2f {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor"} -C3N-02242.miRNA-Seq.A.hg38 C3N-02242 LUAD miRNA-Seq tissue_normal CPT0215410009 e3ac6364-f3d1-48db-bf9a-6ceb4c0f5fe6_mirnaseq_gdc_realn.bam 235475569 BAM harmonized CPTAC3 8769051b-90ef-4109-8edd-3f9871c4b9e2 997e3a8c6a49af92b01a7539372fba75 {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.miRNA-Seq.S33_L007_R1.T C3N-02242 LUAD miRNA-Seq tumor CPT0215400006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L007_R1_001.unaln.bam 226192584 BAM S33_L007_R1 unaligned CPTAC3 138fa03e-da6e-4780-ab38-179529a3e3c7 c267961ad444c9b9c5d98e228530d11e {"aliquot_tag": "ALQ_da51bf51", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02242.miRNA-Seq.S4_L006_R1.A C3N-02242 LUAD miRNA-Seq tissue_normal CPT0215410009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L006_R1_001.unaln.bam 213680706 BAM S4_L006_R1 unaligned CPTAC3 f2e43ce6-b2bb-4140-983e-5a2947d790b7 b4e9c121c344eed671ee3049457fcaaa {"aliquot_tag": "ALQ_778e8b70", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.miRNA-Seq.T.hg38 C3N-02242 LUAD miRNA-Seq tumor CPT0215400006 81dbab21-ea17-4bef-8451-7cb56ecda8e0_mirnaseq_gdc_realn.bam 247139200 BAM harmonized CPTAC3 6e36b948-3529-4522-a993-6a7f2d2db1e9 75794a8ccb3b0708ac19adfcda9ce356 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor"} -C3N-02242.RNA-Seq.chimeric.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.chimeric.gdc_realn.bam 46865174 BAM chimeric harmonized CPTAC3 84c8ec7d-3f30-4ced-894e-9c7f008496c6 c43703f155f94cfc89bfc64c5353e391 {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.RNA-Seq.chimeric.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.chimeric.gdc_realn.bam 42850781 BAM chimeric harmonized CPTAC3 067993cb-e672-4bcd-94ef-c8552314c00e 1b71b9622d3e6a1238b78cdcf9349e64 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor"} -C3N-02242.RNA-Seq.genomic.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.genomic.gdc_realn.bam 8797649961 BAM genomic harmonized CPTAC3 56cce741-1398-4821-9bc1-b8f6ada5555c 0fbcda519ac287581b0ab9b3eb142c60 {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.RNA-Seq.genomic.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.genomic.gdc_realn.bam 8503337051 BAM genomic harmonized CPTAC3 87d16c6e-9dbb-48ad-9236-018847726be0 ac966a99f8c1aa0b596ff26f7ad9a657 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor"} -C3N-02242.RNA-Seq.S15_L004_R1.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R1_001.fastq.gz 3724389175 FASTQ S15_L004_R1 unaligned CPTAC3 79c4491e-91af-47b6-82a7-2d51e8fbd39c 416b6b1ead7c4f186088b96f446d05be {"aliquot_tag": "ALQ_da51bf51", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02242.RNA-Seq.S15_L004_R2.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R2_001.fastq.gz 4097859326 FASTQ S15_L004_R2 unaligned CPTAC3 c933fbca-dc15-4090-8b59-35979f173e0c 12b2c5501652fd115d1d90f0727a4ced {"aliquot_tag": "ALQ_da51bf51", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02242.RNA-Seq.S7_L002_R1.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R1_001.fastq.gz 3893573485 FASTQ S7_L002_R1 unaligned CPTAC3 d92f6349-19c6-4d2e-aaa7-df2b50bf8f97 dc6b04f686c42754d761a6fb02c0a464 {"aliquot_tag": "ALQ_778e8b70", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.RNA-Seq.S7_L002_R2.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R2_001.fastq.gz 4362131709 FASTQ S7_L002_R2 unaligned CPTAC3 7b52e55f-d06b-4402-b2a3-b446eecda4eb e6cea890ad8ee54c1ffada4fee16881f {"aliquot_tag": "ALQ_778e8b70", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.RNA-Seq.transcriptome.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.transcriptome.gdc_realn.bam 9018634921 BAM transcriptome harmonized CPTAC3 384990ba-0367-40f9-a971-ca315ecaeaec 160917b3a5acce36805d3bacb0ca050a {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.RNA-Seq.transcriptome.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.transcriptome.gdc_realn.bam 10583615377 BAM transcriptome harmonized CPTAC3 b09d5509-99f9-497a-ba78-2736e2213f02 22d2074aec839c7a098e0254a817f427 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor"} -C3N-02242.WGS.N C3N-02242 LUAD WGS blood_normal CPT0215490002 CPT0215490002.WholeGenome.RP-1303.bam 52041367855 BAM aligned CPTAC3 100f95dc-898a-48da-bdd0-6c2c77df10dc 16090841828b2c9496bf8b43ed99c160 {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal"} -C3N-02242.WGS.N.hg38 C3N-02242 LUAD WGS blood_normal CPT0215490002 7223aa6b-89c1-4dd1-bb0b-924f7940ae8c_wgs_gdc_realn.bam 76640265740 BAM harmonized CPTAC3 7a1a13b5-6f67-4b57-9e4a-a4abc28f1966 6e4b381514546d178e5a9f3ec5442857 {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal"} -C3N-02242.WGS.T C3N-02242 LUAD WGS tumor CPT0215400009 CPT0215400009.WholeGenome.RP-1303.bam 57588960935 BAM aligned CPTAC3 97aa774b-90ca-44c6-8013-78d8fc08afc9 cdef9558b4bd1f64df154a5f19105e90 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor"} -C3N-02242.WGS.T.hg38 C3N-02242 LUAD WGS tumor CPT0215400009 82a41093-64d0-4c51-be9c-b93c796319b3_wgs_gdc_realn.bam 85532652979 BAM harmonized CPTAC3 c1ac5dd5-af87-4932-ad36-f05e396812ec c884163797ef1640ebd8934161d4e136 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor"} -C3N-02242.WXS.A C3N-02242 LUAD WXS tissue_normal CPT0215410006 CPT0215410006.WholeExome.RP-1303.bam 45475755364 BAM aligned CPTAC3 a7e2ee0a-1585-41e4-9ffa-a54cf79c6372 528d33feb947ef9f81fbd1386cbbcf1a {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.WXS.A.hg38 C3N-02242 LUAD WXS tissue_normal CPT0215410006 6a9d64ec-47a9-4fe9-98fa-dcf0b194caee_wxs_gdc_realn.bam 62478776865 BAM harmonized CPTAC3 c66be722-0689-4471-b5c6-e53a965bc9e7 e5e4b2c31ac568716e2919404aba8eb9 {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02242.WXS.N C3N-02242 LUAD WXS blood_normal CPT0215490002 CPT0215490002.WholeExome.RP-1303.bam 20198524980 BAM aligned CPTAC3 40cff579-64d4-4bc4-a818-44e8fbe1bf0d fa7a023277fc3d24d1f3cb1b4690fa9a {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal"} -C3N-02242.WXS.N.hg38 C3N-02242 LUAD WXS blood_normal CPT0215490002 7223aa6b-89c1-4dd1-bb0b-924f7940ae8c_wxs_gdc_realn.bam 28025567244 BAM harmonized CPTAC3 af86f4e3-5f6d-4c54-9a95-71dafc835215 257dab8625f958f4d36b9b649d1dee0d {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal"} -C3N-02242.WXS.T C3N-02242 LUAD WXS tumor CPT0215400009 CPT0215400009.WholeExome.RP-1303.bam 25302152895 BAM aligned CPTAC3 30b85817-fcb0-46a5-81c2-af0a3c22be30 0764354de6ff5a59bd2f99613acf2e7b {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor"} -C3N-02242.WXS.T.hg38 C3N-02242 LUAD WXS tumor CPT0215400009 82a41093-64d0-4c51-be9c-b93c796319b3_wxs_gdc_realn.bam 34513305736 BAM harmonized CPTAC3 674994d2-26ba-42e6-af03-f4ea17eb0f11 eb6f8c5d4cdebc740dd1fcfc47e0e048 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor"} -C3N-02244.MethArray.Green.T C3N-02244 UCEC Methylation_Array tumor CPT0128960006 203219640133_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 16c61d57-d35f-4592-914a-44e1b4012b15 107257a2adeaa7d87a0e2e6757669ef4 {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor"} -C3N-02244.MethArray.Red.T C3N-02244 UCEC Methylation_Array tumor CPT0128960006 203219640133_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 a5a552fc-ea2c-4774-a349-2468404c64a7 632831767644cfaa24444449e9c6e2cc {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor"} -C3N-02244.miRNA-Seq.S16_L004_R1.T C3N-02244 UCEC miRNA-Seq tumor CPT0128960009 190108_UNC31-K00269_0176_AHYGLVBBXX_CCGTCC_S16_L004_R1_001.unaln.bam 261954688 BAM S16_L004_R1 unaligned CPTAC3 dad53e76-942e-4108-8e36-d64f69c41e5b 839e00bff5f4238e7f2cba5e1239a0dd {"aliquot_tag": "ALQ_afe51e58", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02244.miRNA-Seq.T.hg38 C3N-02244 UCEC miRNA-Seq tumor CPT0128960009 5f915905-2391-4c45-a92f-f8455bfe205c_mirnaseq_gdc_realn.bam 287458899 BAM harmonized CPTAC3 74e61a6a-0454-4318-99b9-b150ad08c31a f42a308c38417d89195e00908383d2e3 {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.chimeric.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.chimeric.gdc_realn.bam 51503873 BAM chimeric harmonized CPTAC3 105509d4-d51f-4e52-b0f6-07601a93fbde 3c1d591abd31af54e3da17a71aed92d2 {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.chimeric.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.chimeric.gdc_realn.bam 272971354 BAM chimeric harmonized CPTAC3 ec163594-7436-4a82-90fa-03f8f8a2b4f3 17d41f436fe488908a44749692c8b9d0 {"aliquot_tag": "ALQ_af0639b6", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.genomic.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.genomic.gdc_realn.bam 9547138330 BAM genomic harmonized CPTAC3 5c0a32ca-ab5b-4bd9-bfd8-7c0813628129 3e37fea55c3f4a4de96a381845bab97f {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.genomic.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.genomic.gdc_realn.bam 15803971428 BAM genomic harmonized CPTAC3 7041a013-e495-4fce-9b7b-7cdd77459f95 a375d8fc0c3a6ec655f024c6d705e5b4 {"aliquot_tag": "ALQ_af0639b6", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.S12_L004_R1.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R1_001.fastq.gz 4373165706 FASTQ S12_L004_R1 unaligned CPTAC3 97a680a9-c31f-4139-b119-8d1bed262d43 cb7b4caf8963e7b3df4e292194064615 {"aliquot_tag": "ALQ_afe51e58", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.S12_L004_R2.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R2_001.fastq.gz 4465880356 FASTQ S12_L004_R2 unaligned CPTAC3 a7ba3331-3d0c-4a01-a11e-d1b5628c2d1a 611b56558b301522dbbf4d188f4ee60d {"aliquot_tag": "ALQ_afe51e58", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.S55_R1.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R1_001.fastq.gz 8929658897 FASTQ S55_R1 unaligned CPTAC3 a95fb7ee-a459-4581-ae0d-c2f2cf028304 3788d9d05ba71b67f268c75586c171e4 {"aliquot_tag": "ALQ_af0639b6", "sample": "S55", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.S55_R2.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R2_001.fastq.gz 9324635698 FASTQ S55_R2 unaligned CPTAC3 1b379483-2be0-4447-a925-5dc1727b685d 3d3f64c680c43e2d5f0f9982c0a2c09c {"aliquot_tag": "ALQ_af0639b6", "sample": "S55", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.transcriptome.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.transcriptome.gdc_realn.bam 9217387197 BAM transcriptome harmonized CPTAC3 aa2347f3-b4f9-4232-94f6-9f9ea7fa6f56 8ea762e011cb7fefcebbc65394bbab58 {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor"} -C3N-02244.RNA-Seq.transcriptome.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.transcriptome.gdc_realn.bam 9661130781 BAM transcriptome harmonized CPTAC3 b2625944-283e-4add-b8b3-5458d0a10e6b db0394b6cccddbcb3862fb5966d9cd20 {"aliquot_tag": "ALQ_af0639b6", "gdc_sample_type": "Primary Tumor"} -C3N-02244.WGS.N C3N-02244 UCEC WGS blood_normal CPT0130790002 CPT0130790002.WholeGenome.RP-1303.bam 62808517216 BAM aligned CPTAC3 9b73f5e2-8542-48aa-a37d-32492e26dca1 4f5715f692d55339bfda88cbae3e7fe7 {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02244.WGS.N.hg38 C3N-02244 UCEC WGS blood_normal CPT0130790002 dc38f60d-f4cc-4468-aba1-4e164e246570_wgs_gdc_realn.bam 91212059309 BAM harmonized CPTAC3 8e9bba9a-0424-4f69-97be-1c3c9c9a8e18 e38ba07fb7ae5c05096447f3cd3b81e0 {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02244.WGS.T C3N-02244 UCEC WGS tumor CPT0128960006 CPT0128960006.WholeGenome.RP-1303.bam 59045166107 BAM aligned CPTAC3 4eeb983a-7654-4a9c-8ee4-fda81d65c786 aea72dca16ea4bf67d847ade475f81ee {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor"} -C3N-02244.WGS.T.hg38 C3N-02244 UCEC WGS tumor CPT0128960006 f0508592-8984-40b3-b199-cd49719d56bd_wgs_gdc_realn.bam 85301478851 BAM harmonized CPTAC3 b66429dd-d974-4acf-b25e-b45eb1210ae8 918cc67160930d8652aba64ffc3dcd10 {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor"} -C3N-02244.WXS.N C3N-02244 UCEC WXS blood_normal CPT0130790002 CPT0130790002.WholeExome.RP-1303.bam 29251543289 BAM aligned CPTAC3 c8911b49-6430-444e-9701-66d6e87ee867 c75326806808b8c97c8f55f2c5b86cea {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02244.WXS.N.hg38 C3N-02244 UCEC WXS blood_normal CPT0130790002 dc38f60d-f4cc-4468-aba1-4e164e246570_wxs_gdc_realn.bam 40629313479 BAM harmonized CPTAC3 d3542a68-a032-4fd5-80df-256d6ec69eb1 b0470daef295297a229784b9c422ad2f {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02244.WXS.T C3N-02244 UCEC WXS tumor CPT0128960006 CPT0128960006.WholeExome.RP-1303.bam 24208818106 BAM aligned CPTAC3 23f4c741-ad23-4f4d-9d6b-6fb2fa61336c 86d7ba12e9a65f7e8e1a795f7dec2106 {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor"} -C3N-02244.WXS.T.hg38 C3N-02244 UCEC WXS tumor CPT0128960006 f0508592-8984-40b3-b199-cd49719d56bd_wxs_gdc_realn.bam 32722721438 BAM harmonized CPTAC3 926a9db3-cac7-4f8e-ba11-86d84349b6e8 9ae6e92201c45d5419c7f6f98e39a29c {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor"} -C3N-02247.DUP_3d435967.WGS.T C3N-02247 UCEC WGS tumor CPT0265300006_1 CPT0265300006_1.WholeGenome.RP-1303.bam 85145559916 BAM aligned CPTAC3 4876a270-c55e-443a-9cce-d6e5774d78a7 b85b43977e03b6a47be3fd4d636eb2d1 {"aliquot_tag": "DUP_3d435967", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3N-02247.DUP_3d435967.WGS.T.hg38 C3N-02247 UCEC WGS tumor CPT0265300006_1 26202983-46df-480f-b729-c358bbfca65d_wgs_gdc_realn.bam 122224965740 BAM harmonized CPTAC3 2c4f599d-484e-4c84-bd0f-833d53ffc12d 3fd9c4dc7f0ca2c4d31fe6e8a174f393 {"aliquot_tag": "DUP_3d435967", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3N-02247.MethArray.Green.T C3N-02247 UCEC Methylation_Array tumor CPT0265300006 203561450008_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 99659b5f-bd2f-465b-91ae-6b1e050c2fab f84633052116defc9f226f253c4e5e8e {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor"} -C3N-02247.MethArray.Red.T C3N-02247 UCEC Methylation_Array tumor CPT0265300006 203561450008_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 b5684f05-3570-4da3-bb4d-c9d3199ba6af 1a250e20235306ef5117107a4a67d0c4 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor"} -C3N-02247.miRNA-Seq.S25_L004_R1.T C3N-02247 UCEC miRNA-Seq tumor CPT0265300009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTGAT_S25_L004_R1_001.unaln.bam 264997853 BAM S25_L004_R1 unaligned CPTAC3 418bb62a-38cf-4dd7-a131-a8837b4dee8b 7816c71a4adbedead006c45e27e74f64 {"aliquot_tag": "ALQ_5d2e9b61", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02247.miRNA-Seq.T.hg38 C3N-02247 UCEC miRNA-Seq tumor CPT0265300009 c710640f-3189-452e-9d83-bf6ce574a151_mirnaseq_gdc_realn.bam 299673841 BAM harmonized CPTAC3 f18e9cca-4971-4383-9da9-c6776331e81e ee1ff2ec0d51d012691c21c55520ca76 {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.chimeric.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.chimeric.gdc_realn.bam 37896601 BAM chimeric harmonized CPTAC3 f9e437d4-fecb-4e3f-ab6e-0b5d4534c61b d1ab3504cbd063b2cae7b2f73f728d16 {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.chimeric.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.chimeric.gdc_realn.bam 192046085 BAM chimeric harmonized CPTAC3 ee07b2e8-33d9-46f8-86f2-5f7ef1e616af ecc1fc2c92333520e5dc804b1fd704d3 {"aliquot_tag": "ALQ_9b159c23", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.genomic.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.genomic.gdc_realn.bam 7967421673 BAM genomic harmonized CPTAC3 b24ffa6c-a527-464c-8b28-b7ec62d6d3a7 58677e619b6c4c9c41c786aaead3d41e {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.genomic.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.genomic.gdc_realn.bam 7771075924 BAM genomic harmonized CPTAC3 d7763bc3-8fb7-4d6e-a442-12909b63c6f3 3d4b6272771de747764ede1940d992d3 {"aliquot_tag": "ALQ_9b159c23", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.S15_L004_R1.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R1_001.fastq.gz 3816292755 FASTQ S15_L004_R1 unaligned CPTAC3 836bb5d6-7af6-4d04-974c-b93dd4f99701 41c5faa8d0ee85d5716f82b1fe032565 {"aliquot_tag": "ALQ_5d2e9b61", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.S15_L004_R2.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R2_001.fastq.gz 4179999558 FASTQ S15_L004_R2 unaligned CPTAC3 68f07b2f-c9ae-42d5-8e3c-5259e04e69c3 7588f35ecb130d534f72f9af14c10d87 {"aliquot_tag": "ALQ_5d2e9b61", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.S4_R1.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R1_001.fastq.gz 4291621580 FASTQ S4_R1 unaligned CPTAC3 43ca214e-464d-43ce-a619-607798c07615 b3777f3762b89a0f5592598973bfeb2e {"aliquot_tag": "ALQ_9b159c23", "sample": "S4", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.S4_R2.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R2_001.fastq.gz 4404437118 FASTQ S4_R2 unaligned CPTAC3 78dc7b54-9e26-4998-837f-5f7c6b9d722c 11ba36323130cdb86af1fb4e27cb7e4a {"aliquot_tag": "ALQ_9b159c23", "sample": "S4", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.transcriptome.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.transcriptome.gdc_realn.bam 9751276941 BAM transcriptome harmonized CPTAC3 3f94e1b6-d87b-4b30-8f0b-fbdb34f0e866 7308e92fb8c9aae28f3f7040df5c0c96 {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor"} -C3N-02247.RNA-Seq.transcriptome.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.transcriptome.gdc_realn.bam 2596901484 BAM transcriptome harmonized CPTAC3 d294a50e-734f-4835-81ad-2fc84504f92d eed0e801694a67c7886a7c712c7a5c7b {"aliquot_tag": "ALQ_9b159c23", "gdc_sample_type": "Primary Tumor"} -C3N-02247.WGS.N C3N-02247 UCEC WGS blood_normal CPT0264040002 CPT0264040002.WholeGenome.RP-1303.bam 61370766671 BAM aligned CPTAC3 a2a12f78-677e-4335-8e18-52e4b8179688 0d1eb675ed7a8aa4056828264aa37bf1 {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal"} -C3N-02247.WGS.N.hg38 C3N-02247 UCEC WGS blood_normal CPT0264040002 192611c7-f72b-4642-a1b2-adceb62352d2_wgs_gdc_realn.bam 90982321179 BAM harmonized CPTAC3 8f51e91f-aada-4742-956a-5066a2c3ceb5 e1cc4263716f9e07875122411099f9ca {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal"} -C3N-02247.WGS.T C3N-02247 UCEC WGS tumor CPT0265300006 CPT0265300006.WholeGenome.RP-1303.bam 28178297608 BAM aligned CPTAC3 c125bbc4-60fd-4db5-8bd2-e66857784f83 31630741c5ff592dd5b557e84db78bf3 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor"} -C3N-02247.WGS.T.hg38 C3N-02247 UCEC WGS tumor CPT0265300006 e78d70eb-4244-4d2d-95c9-e215bdce49f4_wgs_gdc_realn.bam 38633894800 BAM harmonized CPTAC3 15413d4e-a4a7-4d8d-b938-760a3ed38077 41fad2806f38bf28f14bd95526243239 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor"} -C3N-02247.WXS.N C3N-02247 UCEC WXS blood_normal CPT0264040002 CPT0264040002.WholeExome.RP-1303.bam 25593869256 BAM aligned CPTAC3 b269de0d-f2f5-4c0c-bf7d-2aed1e65c806 88675bc23d44b088175641bf8441c9c3 {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal"} -C3N-02247.WXS.N.hg38 C3N-02247 UCEC WXS blood_normal CPT0264040002 192611c7-f72b-4642-a1b2-adceb62352d2_wxs_gdc_realn.bam 35473479685 BAM harmonized CPTAC3 a5b722a0-d1cf-4760-bb28-2dfb45511734 77299705f960107528436dbaa6cbc149 {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal"} -C3N-02247.WXS.T C3N-02247 UCEC WXS tumor CPT0265300006 CPT0265300006.WholeExome.RP-1303.bam 28178297656 BAM aligned CPTAC3 bf49ac3c-5b2d-4ba2-baca-02f291312980 605ae9afe288324dad6eb6f4e9d93ee6 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor"} -C3N-02247.WXS.T.hg38 C3N-02247 UCEC WXS tumor CPT0265300006 e78d70eb-4244-4d2d-95c9-e215bdce49f4_wxs_gdc_realn.bam 38683689670 BAM harmonized CPTAC3 eba1d5c3-10bf-4585-9422-5da088ffb806 08148482b01fde1b348a2ecacee5a719 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor"} -C3N-02248.MethArray.Green.T C3N-02248 CCRCC Methylation_Array tumor CPT0129170007 203219670054_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 8d5585cf-bbe3-4f5d-8c46-4c96d39d3dbb c7596ced5ed3132ffea2d04f9353dc34 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor"} -C3N-02248.MethArray.Red.T C3N-02248 CCRCC Methylation_Array tumor CPT0129170007 203219670054_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 5e0cc1e0-c321-47f4-a319-13fd35786ba6 6cebda06ea2098de2c5213c2b78b5e6a {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor"} -C3N-02248.miRNA-Seq.A.hg38 C3N-02248 CCRCC miRNA-Seq tissue_normal CPT0129200006 a2612000-2ea3-4c41-b5eb-70885c359b0b_mirnaseq_gdc_realn.bam 238980378 BAM harmonized CPTAC3 1050769f-9840-4038-8e99-b3de14006a37 a3db8c2ecb7067e4df04ed4b7acaff22 {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02248.miRNA-Seq.S22_L003_R1.A C3N-02248 CCRCC miRNA-Seq tissue_normal CPT0129200006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAAAAG_S22_L003_R1_001.unaln.bam 212242181 BAM S22_L003_R1 unaligned CPTAC3 0f8010b1-619e-4034-bb81-b76075200cae 733ff2fb8c2f57e0855b405e26b23450 {"aliquot_tag": "ALQ_7caa0d1e", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02248.miRNA-Seq.S38_L005_R1.T C3N-02248 CCRCC miRNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTAGCT_S38_L005_R1_001.unaln.bam 268871621 BAM S38_L005_R1 unaligned CPTAC3 af48f33c-dc4a-445f-8e3e-8f7a9cb0b771 6a85906d93458831f6ef33fb9936bc6e {"aliquot_tag": "ALQ_b86637d4", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02248.miRNA-Seq.T.hg38 C3N-02248 CCRCC miRNA-Seq tumor CPT0129170010 b8c1c0e5-b373-444e-9ed5-b9bbcdb3455b_mirnaseq_gdc_realn.bam 292632927 BAM harmonized CPTAC3 10f91e91-2b27-46e7-8a90-0c2d41137c7f 1e8b700110c09eec4bde807cc0af7187 {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor"} -C3N-02248.RNA-Seq.chimeric.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.chimeric.gdc_realn.bam 116257427 BAM chimeric harmonized CPTAC3 0d9293be-816b-4f67-b95e-f1ebe54db112 48d8619723ffdbd0b4754dc95163e14f {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02248.RNA-Seq.chimeric.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.chimeric.gdc_realn.bam 62998600 BAM chimeric harmonized CPTAC3 59ebdfa8-0c66-4a7f-b58a-27749e4d8e2e 65415b8fb824fee34026257539219123 {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor"} -C3N-02248.RNA-Seq.genomic.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.genomic.gdc_realn.bam 7935817877 BAM genomic harmonized CPTAC3 4e80aa7c-4fa0-4f8e-9bf1-da9eff9d705b c5fee6136c04e7635f00b1fffc4f9f31 {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02248.RNA-Seq.genomic.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.genomic.gdc_realn.bam 7603906084 BAM genomic harmonized CPTAC3 dba12368-e4e0-4a36-9c70-c2afe9cbc99c 44899811e62eaab3498d4a4f5576da47 {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor"} -C3N-02248.RNA-Seq.S13_L005_R1.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R1_001.fastq.gz 3745524961 FASTQ S13_L005_R1 unaligned CPTAC3 9201644c-5926-4dbc-b7d4-cf0c3cbab09f 4f3ad3e702ce1ac37d39fc7136565cf6 {"aliquot_tag": "ALQ_7caa0d1e", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02248.RNA-Seq.S13_L005_R2.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R2_001.fastq.gz 3872777502 FASTQ S13_L005_R2 unaligned CPTAC3 9de691ea-8c5e-4dce-b2a7-a4aa7cfa378d b745cda025b59f48a7f00f6049be80a2 {"aliquot_tag": "ALQ_7caa0d1e", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02248.RNA-Seq.S18_L005_R1.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R1_001.fastq.gz 3688404973 FASTQ S18_L005_R1 unaligned CPTAC3 493d3dc8-1ad8-4fae-9a6d-5dcd5e4ddb37 f96b95605a981bea09d072344c0f5bdb {"aliquot_tag": "ALQ_b86637d4", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02248.RNA-Seq.S18_L005_R2.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R2_001.fastq.gz 3814584631 FASTQ S18_L005_R2 unaligned CPTAC3 6a6d5404-1afc-4593-95d3-384984531f95 b7ffce2058307973118c68ab0ee4a766 {"aliquot_tag": "ALQ_b86637d4", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02248.RNA-Seq.transcriptome.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.transcriptome.gdc_realn.bam 8729877169 BAM transcriptome harmonized CPTAC3 6d8a4f68-251e-45e7-82c0-18c9029139cc bca22416eceaca258dc69a9b25c198d2 {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02248.RNA-Seq.transcriptome.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.transcriptome.gdc_realn.bam 9956708494 BAM transcriptome harmonized CPTAC3 ce2ea532-5b1c-47dc-be8b-f1c329eeb9b3 e0b43bb6871832a9e58b677e895f08fb {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor"} -C3N-02248.WGS.N C3N-02248 CCRCC WGS blood_normal CPT0130830002 CPT0130830002.WholeGenome.RP-1303.bam 54458285622 BAM aligned CPTAC3 59da5a36-c942-4e5d-8985-1f3a91c99e2e 2e0e7d6ab52d67deac00320e89d9136b {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02248.WGS.N.hg38 C3N-02248 CCRCC WGS blood_normal CPT0130830002 bf11277c-5f06-4f58-9429-696e2fdcd6d3_wgs_gdc_realn.bam 78452702010 BAM harmonized CPTAC3 3495329f-943f-4717-818a-0602597272e8 8d271fcf064ef9595439fb24901116b7 {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02248.WGS.T C3N-02248 CCRCC WGS tumor CPT0129170007 CPT0129170007.WholeGenome.RP-1303.bam 55459907416 BAM aligned CPTAC3 06ae9a20-85fe-4584-95bc-6ce23d489016 77d2474db7263a7e6ba74df9fc7a33b4 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor"} -C3N-02248.WGS.T.hg38 C3N-02248 CCRCC WGS tumor CPT0129170007 6c378684-83f3-41ea-988b-68563579d68a_wgs_gdc_realn.bam 81677010106 BAM harmonized CPTAC3 ec79bd0e-6eb9-4ecd-9685-f495e82b778c 7d1bcb021c783d3d24ec0f47ea12d290 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor"} -C3N-02248.WXS.N C3N-02248 CCRCC WXS blood_normal CPT0130830002 CPT0130830002.WholeExome.RP-1303.bam 23344055011 BAM aligned CPTAC3 e8514c2c-5d5d-4988-86e9-f5bb85366c24 e4035f4abfdcd009fd4a51f229e0d601 {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02248.WXS.N.hg38 C3N-02248 CCRCC WXS blood_normal CPT0130830002 bf11277c-5f06-4f58-9429-696e2fdcd6d3_wxs_gdc_realn.bam 32534226616 BAM harmonized CPTAC3 4d00c0fb-a13b-4eca-a753-8e30c3a8ce39 9fc42f43759fcf66ea46b74ff4249c1f {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-02248.WXS.T C3N-02248 CCRCC WXS tumor CPT0129170007 CPT0129170007.WholeExome.RP-1303.bam 25961369013 BAM aligned CPTAC3 b32ae866-ebc0-4c00-9099-c5f55aa9111c c149e3641d8797991372829a484dcafb {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor"} -C3N-02248.WXS.T.hg38 C3N-02248 CCRCC WXS tumor CPT0129170007 6c378684-83f3-41ea-988b-68563579d68a_wxs_gdc_realn.bam 35501781737 BAM harmonized CPTAC3 d9cb4944-4535-4223-8542-b0f282b339f0 2586f769d7ebc9b6273b7121df1deb12 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor"} -C3N-02249.MethArray.Green.T C3N-02249 UCEC Methylation_Array tumor CPT0129080006 203219720203_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a018e92f-8290-4466-93c0-f7e1ffc6e97e 06b44b173c5a8c97cbeb40f49a03eb70 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor"} -C3N-02249.MethArray.Red.T C3N-02249 UCEC Methylation_Array tumor CPT0129080006 203219720203_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 22ec344e-9c3d-4115-a43c-b6267641b6c3 5a92da04b5af0c054c25f1914403b363 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor"} -C3N-02249.miRNA-Seq.A.hg38 C3N-02249 UCEC miRNA-Seq tissue_normal CPT0129100006 fdc5bd57-bdaf-4bc5-bf27-1a39bc3c7899_mirnaseq_gdc_realn.bam 314939891 BAM harmonized CPTAC3 2814e83a-769f-4e6b-b785-e0813ff51aa0 fa57f16285542b197ed060305b700fc3 {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02249.miRNA-Seq.S17_L004_R1.T C3N-02249 UCEC miRNA-Seq tumor CPT0129080009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTAGAG_S17_L004_R1_001.unaln.bam 163688300 BAM S17_L004_R1 unaligned CPTAC3 acd52500-7cb8-4acd-b8d3-413042b964f5 938eed547562d2c32d4b675d87c65894 {"aliquot_tag": "ALQ_91adfa45", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02249.miRNA-Seq.S5_L004_R1.A C3N-02249 UCEC miRNA-Seq tissue_normal CPT0129100006 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L004_R1_001.unaln.bam 277297791 BAM S5_L004_R1 unaligned CPTAC3 839f88a4-110b-44a9-b23a-21cff0e5ccbb 15dfc0c4449bbf93ce740d28c8389587 {"aliquot_tag": "ALQ_fa3e7fb0", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02249.miRNA-Seq.T.hg38 C3N-02249 UCEC miRNA-Seq tumor CPT0129080009 c290e317-d998-46ec-822f-20e66af2713e_mirnaseq_gdc_realn.bam 177697483 BAM harmonized CPTAC3 468ae25a-fa97-45db-a715-197745b35f1f 2773c64fd06f62a8e0ecfebf9bb45039 {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.chimeric.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.chimeric.gdc_realn.bam 33674896 BAM chimeric harmonized CPTAC3 837fe98b-174d-485f-b6e8-25f5c9f19b4d 021d5e42e9bcbddc206514bf1d0cdefc {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02249.RNA-Seq.chimeric.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.chimeric.gdc_realn.bam 275596259 BAM chimeric harmonized CPTAC3 fce2bab6-0a47-4db0-9452-d33ca3fc4098 a3718ebd3a1a03cd3e3fa0af38432fcd {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.chimeric.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.chimeric.gdc_realn.bam 211272488 BAM chimeric harmonized CPTAC3 b740490d-08c7-4d47-83c5-d2b19b3f6f96 fe22d363c08df87c4ab2a8976bb2b4f6 {"aliquot_tag": "ALQ_593ac3a3", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.genomic.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.genomic.gdc_realn.bam 8888977801 BAM genomic harmonized CPTAC3 a3774a01-f54e-426c-8983-96720ed22196 0d935ba9347fe91086e70b695fbdefba {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02249.RNA-Seq.genomic.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.genomic.gdc_realn.bam 8640824363 BAM genomic harmonized CPTAC3 411ac7f1-dbfd-40aa-899e-3532239bc893 84e39ac0bcf549c5ac000c0b1b2d7db5 {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.genomic.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.genomic.gdc_realn.bam 10475166913 BAM genomic harmonized CPTAC3 ba3a79d8-13c2-42fc-94ca-543845cf694c 99aaf7658412221e241145f42f65aa3c {"aliquot_tag": "ALQ_593ac3a3", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.S13_L005_R1.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R1_001.fastq.gz 3833341354 FASTQ S13_L005_R1 unaligned CPTAC3 89405e08-b72d-4189-939f-c18f88f161a8 f26ecd6c0ccc2e22ed07abb34af1e994 {"aliquot_tag": "ALQ_91adfa45", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.S13_L005_R2.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R2_001.fastq.gz 4307337781 FASTQ S13_L005_R2 unaligned CPTAC3 8599e40d-9c5e-4ad8-847b-0adc85ff0cfa 7f26f2a0238c0c9e16463fdecea44d0c {"aliquot_tag": "ALQ_91adfa45", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.S4_L007_R1.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3999607005 FASTQ S4_L007_R1 unaligned CPTAC3 bb3060cb-3d7d-4c8e-95d3-6647be70684f 1a36604aca3a8b914be868509861d860 {"aliquot_tag": "ALQ_fa3e7fb0", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02249.RNA-Seq.S4_L007_R2.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R2_001.fastq.gz 3872848447 FASTQ S4_L007_R2 unaligned CPTAC3 45c48883-9367-46f1-a9c1-69062f645f0f ae809a2fbf45d4ab06db0ad89b675697 {"aliquot_tag": "ALQ_fa3e7fb0", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02249.RNA-Seq.S58_R1.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R1_001.fastq.gz 6627127489 FASTQ S58_R1 unaligned CPTAC3 c4f8c3d4-d759-4b58-a9f4-3e62be8ebe73 7ec9f515b03f6529a5bbce7d444bb0e7 {"aliquot_tag": "ALQ_593ac3a3", "sample": "S58", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.S58_R2.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R2_001.fastq.gz 6998254774 FASTQ S58_R2 unaligned CPTAC3 507fc5ed-98e0-4627-9195-808f424e2f2a 2a45e88db22c6d913a7e1d9d85cc6e49 {"aliquot_tag": "ALQ_593ac3a3", "sample": "S58", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.transcriptome.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.transcriptome.gdc_realn.bam 9378577474 BAM transcriptome harmonized CPTAC3 26c67d64-2d48-43f4-9ec9-33eb6652be1c ec6ff7813e63503e4261694a928ec6e4 {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02249.RNA-Seq.transcriptome.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.transcriptome.gdc_realn.bam 11008171552 BAM transcriptome harmonized CPTAC3 c8211f4f-34c3-4962-8af9-1c25c94a9711 08358b2991417cdc6dba42e38465a57f {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor"} -C3N-02249.RNA-Seq.transcriptome.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.transcriptome.gdc_realn.bam 6650275329 BAM transcriptome harmonized CPTAC3 971c4651-60cd-485b-8a20-d984e177fa78 9d1e06cbbb424034d7a1aa50397c1382 {"aliquot_tag": "ALQ_593ac3a3", "gdc_sample_type": "Primary Tumor"} -C3N-02249.WGS.N C3N-02249 UCEC WGS blood_normal CPT0130810002 CPT0130810002.WholeGenome.RP-1303.bam 62036226534 BAM aligned CPTAC3 be0e1bfd-d3bd-46c0-8672-83374263a071 bdbd326a215acefa7611884b00ca64ba {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02249.WGS.N.hg38 C3N-02249 UCEC WGS blood_normal CPT0130810002 5df2768a-0e96-490f-bff2-48589110108f_wgs_gdc_realn.bam 92762852447 BAM harmonized CPTAC3 2caf5ea0-a5fa-453c-8fe5-3a681b989632 91c991e4b519e7da6547c8d45426f1c3 {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02249.WGS.T C3N-02249 UCEC WGS tumor CPT0129080006 CPT0129080006.WholeGenome.RP-1303.bam 63847827724 BAM aligned CPTAC3 0445ef83-e285-447d-8435-3e10687c0cfa 476a6f9242e59ce5e51e2058936978ec {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor"} -C3N-02249.WGS.T.hg38 C3N-02249 UCEC WGS tumor CPT0129080006 905ada72-761f-4a71-89bd-5dcabab30043_wgs_gdc_realn.bam 95003721366 BAM harmonized CPTAC3 74445290-cce1-4567-b21c-dcc1be852c2d 8e507e1eafe2e0bf716934b5ec2a6dac {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor"} -C3N-02249.WXS.N C3N-02249 UCEC WXS blood_normal CPT0130810002 CPT0130810002.WholeExome.RP-1303.bam 18640172803 BAM aligned CPTAC3 40b43e49-b995-474e-b4df-6a0a9f15d6af 67ee71b576592b86b61fd44b618bc040 {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02249.WXS.N.hg38 C3N-02249 UCEC WXS blood_normal CPT0130810002 5df2768a-0e96-490f-bff2-48589110108f_wxs_gdc_realn.bam 26107999631 BAM harmonized CPTAC3 a3004536-7812-4441-87b4-72715964efe0 b54b6d75d890033fdad7de630b4a2827 {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02249.WXS.T C3N-02249 UCEC WXS tumor CPT0129080006 CPT0129080006.WholeExome.RP-1303.bam 29660379080 BAM aligned CPTAC3 52c87360-e171-406a-93b0-0c009ffe6aa5 9372846d2382a2b8be91185404543e38 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor"} -C3N-02249.WXS.T.hg38 C3N-02249 UCEC WXS tumor CPT0129080006 905ada72-761f-4a71-89bd-5dcabab30043_wxs_gdc_realn.bam 40715468971 BAM harmonized CPTAC3 14bbea5c-5660-426a-b291-7990840adcd5 d71821c0960635938a633376e19d7a03 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor"} -C3N-02252.MethArray.Green.A C3N-02252 LSCC Methylation_Array tissue_normal CPT0128900006 203220070082_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ac15e875-0407-4b46-b69c-2688a187e24a b727e06f8f38a08c3cdeb2ece545adb3 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.MethArray.Green.T C3N-02252 LSCC Methylation_Array tumor CPT0128890006 203028200100_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bd1ea576-ce8e-43dc-b6ba-6f45f52d855c 1615a0b6a10187b56d8c85461695f3a0 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor"} -C3N-02252.MethArray.Red.A C3N-02252 LSCC Methylation_Array tissue_normal CPT0128900006 203220070082_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 ef0b7b5e-40e4-44c2-9649-adbefcc2e44c 07c20bb231066c577b258555b8c689c6 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.MethArray.Red.T C3N-02252 LSCC Methylation_Array tumor CPT0128890006 203028200100_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 325d4fb2-bca6-4692-9a88-33718fba6459 2ce04f7efe19f4ed250a0752a69cfd69 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor"} -C3N-02252.miRNA-Seq.A.hg38 C3N-02252 LSCC miRNA-Seq tissue_normal CPT0128900009 59d6b71d-f3ad-422a-9d42-c185b5acdcd2_mirnaseq_gdc_realn.bam 284191587 BAM harmonized CPTAC3 f2fc9d11-798b-4f78-a9e6-fb999eb6c7b6 2824d2d19a106b094fe64bcd8a3b2435 {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.miRNA-Seq.S15_L001_R1.T C3N-02252 LSCC miRNA-Seq tumor CPT0128890009 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGTCA_S15_L001_R1_001.unaln.bam 270776214 BAM S15_L001_R1 unaligned CPTAC3 bb400b90-2ebf-4adc-9e11-098aa530fb2d 1a2d0c25e19412b0139347d34e4d4333 {"aliquot_tag": "ALQ_e6e95a2c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02252.miRNA-Seq.S45_L002_R1.A C3N-02252 LSCC miRNA-Seq tissue_normal CPT0128900009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCCCGA_S45_L002_R1_001.unaln.bam 254428699 BAM S45_L002_R1 unaligned CPTAC3 aefaf1f7-d49a-4e66-95c8-1aa20c2ffd5b f0463925dbdb7d099771b60b991b9f06 {"aliquot_tag": "ALQ_20a5ebf8", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.miRNA-Seq.T.hg38 C3N-02252 LSCC miRNA-Seq tumor CPT0128890009 bc3e8791-f273-45a9-be00-b7afc414e491_mirnaseq_gdc_realn.bam 295002464 BAM harmonized CPTAC3 00eccc28-6c40-4bbc-873f-dbdf405bf700 e6dddc9a3b9eef821d0adf794d1fa150 {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor"} -C3N-02252.RNA-Seq.chimeric.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.chimeric.gdc_realn.bam 27006368 BAM chimeric harmonized CPTAC3 e96000ab-c167-48a0-8609-3631a44e1f95 834afc5a1e832c4f85a88a91566f4fcd {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.RNA-Seq.chimeric.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.chimeric.gdc_realn.bam 29333169 BAM chimeric harmonized CPTAC3 3b9cbe96-499c-4e38-a047-7720850581bf ae7b67ceb9b7515c973458b3ef2d6cdc {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor"} -C3N-02252.RNA-Seq.genomic.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.genomic.gdc_realn.bam 7566955755 BAM genomic harmonized CPTAC3 536893d0-5137-4250-ae88-612313b9b2af 69b1238831234566f7282d0629e665eb {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.RNA-Seq.genomic.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.genomic.gdc_realn.bam 9441485426 BAM genomic harmonized CPTAC3 eca9cac6-140a-4e8e-8e4c-c9a5cf9ead34 5088d18a4acdd8122047917158a02cc2 {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor"} -C3N-02252.RNA-Seq.S31_L008_R1.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R1_001.fastq.gz 3998347361 FASTQ S31_L008_R1 unaligned CPTAC3 0a22da20-b273-4596-a20d-078203ca6af0 d5dec3e669ad83768a3ccc74805d99ab {"aliquot_tag": "ALQ_e6e95a2c", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02252.RNA-Seq.S31_L008_R2.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R2_001.fastq.gz 4274121804 FASTQ S31_L008_R2 unaligned CPTAC3 4e9b93f7-0b11-4435-a726-c00303a07aad 3d71de8230414780ea030cb707fa42d1 {"aliquot_tag": "ALQ_e6e95a2c", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02252.RNA-Seq.S6_L008_R1.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3296410991 FASTQ S6_L008_R1 unaligned CPTAC3 b1be224d-7636-4277-b075-1c6022411068 4e3cff56c74b14257c532c85f820ede9 {"aliquot_tag": "ALQ_20a5ebf8", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.RNA-Seq.S6_L008_R2.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3391249468 FASTQ S6_L008_R2 unaligned CPTAC3 8ce1fdd3-9efa-4b03-acea-96306e5a5e05 3ff4fac54a0f96768c1bc8ce99c0b553 {"aliquot_tag": "ALQ_20a5ebf8", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.RNA-Seq.transcriptome.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.transcriptome.gdc_realn.bam 8162678110 BAM transcriptome harmonized CPTAC3 de7bc5aa-6cbb-450c-bf9a-e1d56c4e74ff 0026133edab7880ee15195af04adfa0e {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.RNA-Seq.transcriptome.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.transcriptome.gdc_realn.bam 10514509937 BAM transcriptome harmonized CPTAC3 2031e087-3be7-4d20-a443-112df8266820 b85d6deadf0d3ad702d42b91bc4f431f {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor"} -C3N-02252.WGS.A C3N-02252 LSCC WGS tissue_normal CPT0128900006 CPT0128900006.WholeGenome.RP-1303.bam 61334719204 BAM aligned CPTAC3 7029525e-de98-4bf0-a138-f6e01eb64d9b 030705b67f56877eb1ae179596c64cf1 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.WGS.A.hg38 C3N-02252 LSCC WGS tissue_normal CPT0128900006 7c1392b8-94e4-4e62-a218-a8daa0dfb70d_wgs_gdc_realn.bam 88614410446 BAM harmonized CPTAC3 a0c2ec20-9db9-49a7-a91c-3f7c2865d4c3 aa1ceca44992ab1bfd1583fc044d220e {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.WGS.N C3N-02252 LSCC WGS blood_normal CPT0130770002 CPT0130770002.WholeGenome.RP-1303.bam 59026066739 BAM aligned CPTAC3 6daf662a-761d-4ddc-bb7d-327a4607e94f 7e1cdfb8eb5456d616888a52a02cd724 {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02252.WGS.N.hg38 C3N-02252 LSCC WGS blood_normal CPT0130770002 c76b462a-1b74-4cbc-aa4f-18ba1c67ddee_wgs_gdc_realn.bam 84828954077 BAM harmonized CPTAC3 b26fa50b-ea4b-4324-8212-9c001c8e3b95 8e2a219915bac51916e850723d3ff407 {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02252.WGS.T C3N-02252 LSCC WGS tumor CPT0128890006 CPT0128890006.WholeGenome.RP-1303.bam 63058779701 BAM aligned CPTAC3 16959a62-07c7-400d-9dd4-7e5afaf2cf5f c066c4e8f974a602a7f10db3f07a5bdd {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor"} -C3N-02252.WGS.T.hg38 C3N-02252 LSCC WGS tumor CPT0128890006 ebfc2cd0-54b0-4dba-afd4-a9b59f7e5706_wgs_gdc_realn.bam 90455600189 BAM harmonized CPTAC3 1c9fb5ca-e390-4366-a48c-2570ad65020b 789dd36aab728e654ace1e5cfd794e61 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor"} -C3N-02252.WXS.A C3N-02252 LSCC WXS tissue_normal CPT0128900006 CPT0128900006.WholeExome.RP-1303.bam 23600045099 BAM aligned CPTAC3 051a7092-bffd-4650-8e9e-e9b57ed3e68e 98f8c4f583b0f1a1fa9d8594838e43d0 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.WXS.A.hg38 C3N-02252 LSCC WXS tissue_normal CPT0128900006 7c1392b8-94e4-4e62-a218-a8daa0dfb70d_wxs_gdc_realn.bam 32794669274 BAM harmonized CPTAC3 dbb09bcc-213c-4d65-82e9-d6991bd282bb 0b5f29cf5da37ffd34381b068ca2cc4f {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02252.WXS.N C3N-02252 LSCC WXS blood_normal CPT0130770002 CPT0130770002.WholeExome.RP-1303.bam 17088732464 BAM aligned CPTAC3 f8a488a2-8845-44b5-9521-3faae3da9e34 7502204e0c06f63490e6a13459e1a45f {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02252.WXS.N.hg38 C3N-02252 LSCC WXS blood_normal CPT0130770002 c76b462a-1b74-4cbc-aa4f-18ba1c67ddee_wxs_gdc_realn.bam 24342884232 BAM harmonized CPTAC3 66ed598c-f43d-44a5-b496-af4330c65856 af2f09a997c097e81357f33606efc669 {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02252.WXS.T C3N-02252 LSCC WXS tumor CPT0128890006 CPT0128890006.WholeExome.RP-1303.bam 29047996848 BAM aligned CPTAC3 fffa7e41-dfa6-487d-8ee8-05bb2638aa74 c66f916b4fe2a9c523e059251fbbefc0 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor"} -C3N-02252.WXS.T.hg38 C3N-02252 LSCC WXS tumor CPT0128890006 ebfc2cd0-54b0-4dba-afd4-a9b59f7e5706_wxs_gdc_realn.bam 40206707767 BAM harmonized CPTAC3 6619382f-fd6d-40f0-9609-dd57af52995f c3fb1fab772af32b7643d5fa2a919e7c {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor"} -C3N-02253.MethArray.Green.T C3N-02253 UCEC Methylation_Array tumor CPT0128770006 203219650100_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 33371e76-f478-4c85-a70d-6e34663a730b 53aaa24b09710d4eac5a722aabd65df4 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor"} -C3N-02253.MethArray.Red.T C3N-02253 UCEC Methylation_Array tumor CPT0128770006 203219650100_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 fea5aa62-144f-4d7f-9bdb-242676b3ee97 e08df5bbdf33984d1eda68608fb79673 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor"} -C3N-02253.miRNA-Seq.A.hg38 C3N-02253 UCEC miRNA-Seq tissue_normal CPT0128800009 9239fe3a-631d-42a0-b522-8d2996efad50_mirnaseq_gdc_realn.bam 325331554 BAM harmonized CPTAC3 6951d97f-657f-41d5-bd3a-c8e3a499af08 700868f7b9ec089bf97981e6731664a5 {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.miRNA-Seq.S15_L004_R1.T C3N-02253 UCEC miRNA-Seq tumor CPT0128770009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGTCA_S15_L004_R1_001.unaln.bam 177132841 BAM S15_L004_R1 unaligned CPTAC3 a99d00b9-2c9e-4d19-9f44-64cb7d6e2c85 eda35a763a70c15add737ba34616c359 {"aliquot_tag": "ALQ_a88f5698", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02253.miRNA-Seq.S4_L004_R1.A C3N-02253 UCEC miRNA-Seq tissue_normal CPT0128800009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L004_R1_001.unaln.bam 283891059 BAM S4_L004_R1 unaligned CPTAC3 0336b4d1-be54-4cc7-92fa-66dff53c4bb3 ff9474b11fc1b96fd0ac799114d3d3ef {"aliquot_tag": "ALQ_ebf9385d", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.miRNA-Seq.T.hg38 C3N-02253 UCEC miRNA-Seq tumor CPT0128770009 480da82d-c89a-41f8-b993-905ccbb8ccb8_mirnaseq_gdc_realn.bam 192338554 BAM harmonized CPTAC3 1899fb65-90a8-4958-80a7-e4d35114a854 9577d45549da87ca115fc57f9241c6bf {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.chimeric.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.chimeric.gdc_realn.bam 39589055 BAM chimeric harmonized CPTAC3 e60127df-9aac-45c4-a428-d4fc5b60b99f 15351035ba41801de66a2b704e7e1b5a {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.RNA-Seq.chimeric.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.chimeric.gdc_realn.bam 39885081 BAM chimeric harmonized CPTAC3 e6fcc2ff-36ac-4efb-808c-5b774f41cc58 41183c80564da5c37c7a3876b8a05c90 {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.chimeric.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.chimeric.gdc_realn.bam 204348895 BAM chimeric harmonized CPTAC3 6789eb1a-d256-424c-818f-f624a3deec57 c0734cb6b049e8ab0340a1400b4013a1 {"aliquot_tag": "ALQ_d84299df", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.genomic.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.genomic.gdc_realn.bam 9281535714 BAM genomic harmonized CPTAC3 f99cd6a0-b339-4c45-a922-2f1ae6fa9972 fee26381b9e0745c1d935539d149f86a {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.RNA-Seq.genomic.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.genomic.gdc_realn.bam 8303564555 BAM genomic harmonized CPTAC3 053a265c-e798-408a-ac59-734ebf9e340a 161a4a695a9d19093ab237f90e01d351 {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.genomic.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.genomic.gdc_realn.bam 10433836124 BAM genomic harmonized CPTAC3 392491e6-0df5-424b-8929-6db795811038 35a8961fc08e82204c908c2b9c382f73 {"aliquot_tag": "ALQ_d84299df", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.S11_L004_R1.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R1_001.fastq.gz 3679101999 FASTQ S11_L004_R1 unaligned CPTAC3 e71a2ecf-dd81-47f5-a063-d79e0bc6e1bf dc2b401cd30ed69c333f16b85aa6dea2 {"aliquot_tag": "ALQ_a88f5698", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.S11_L004_R2.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R2_001.fastq.gz 3987206525 FASTQ S11_L004_R2 unaligned CPTAC3 41124954-da18-4aae-84f8-046f67939d4d bf5ec741a794918b7a53a1517823b12a {"aliquot_tag": "ALQ_a88f5698", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.S1_L007_R1.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3856850625 FASTQ S1_L007_R1 unaligned CPTAC3 c57ca5e7-a9e1-429c-8ee6-4bbb2c89cbb2 9eb34101c00f7a77cdae7dfbcd1dcb4f {"aliquot_tag": "ALQ_ebf9385d", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.RNA-Seq.S1_L007_R2.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 3785256286 FASTQ S1_L007_R2 unaligned CPTAC3 98a946ed-681d-4a9f-82a1-2bdbdb4a9054 837e74693b353908acdaacef4dfe7ef3 {"aliquot_tag": "ALQ_ebf9385d", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.RNA-Seq.S34_R1.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R1_001.fastq.gz 6115737040 FASTQ S34_R1 unaligned CPTAC3 20508caa-5e1b-4467-b0ce-2aa137fdd866 774df2594c817af8532deaf70a431c1b {"aliquot_tag": "ALQ_d84299df", "sample": "S34", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.S34_R2.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R2_001.fastq.gz 6304294811 FASTQ S34_R2 unaligned CPTAC3 861aa769-44fc-4901-9225-569323863452 03f2f1528f99ce4487743ceb79a20459 {"aliquot_tag": "ALQ_d84299df", "sample": "S34", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.transcriptome.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.transcriptome.gdc_realn.bam 9199817027 BAM transcriptome harmonized CPTAC3 8b0b6e12-c8d3-4297-90f5-abb8d658f549 5835924b7c7d95105d869cd1cb6e7182 {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.RNA-Seq.transcriptome.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.transcriptome.gdc_realn.bam 9951404581 BAM transcriptome harmonized CPTAC3 6e0e95be-abbf-4ab0-8a6a-7d3ad1467e92 c281660d1c4290fef693399857246614 {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor"} -C3N-02253.RNA-Seq.transcriptome.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.transcriptome.gdc_realn.bam 5668466188 BAM transcriptome harmonized CPTAC3 747362f5-1ac3-4a5b-933f-b901674e76c4 440cf9ff4f042b05c95dcdab5cf0bf1c {"aliquot_tag": "ALQ_d84299df", "gdc_sample_type": "Primary Tumor"} -C3N-02253.WGS.N C3N-02253 UCEC WGS blood_normal CPT0130760002 CPT0130760002.WholeGenome.RP-1303.bam 65021028979 BAM aligned CPTAC3 fd595034-4369-4135-b6a8-0d80be00d4f6 deb1478032d108cae603d2a1e76cc9c0 {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal"} -C3N-02253.WGS.N.hg38 C3N-02253 UCEC WGS blood_normal CPT0130760002 0ba84a92-8c3f-4d2f-b252-94f19d64ac7f_wgs_gdc_realn.bam 95128194201 BAM harmonized CPTAC3 9593cfb4-8def-403d-a65c-f798f7b9c9b8 334b0a7a55e0f324cb51b546be9d624f {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal"} -C3N-02253.WGS.T C3N-02253 UCEC WGS tumor CPT0128770006 CPT0128770006.WholeGenome.RP-1303.bam 52960537428 BAM aligned CPTAC3 2659fab8-3423-4ace-aebe-307e9bc19cff 3e44650c27ca019dccc7a1abffb5d5f5 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor"} -C3N-02253.WGS.T.hg38 C3N-02253 UCEC WGS tumor CPT0128770006 64ed7413-de86-4851-b0ef-e47aa17f1a3c_wgs_gdc_realn.bam 78318568643 BAM harmonized CPTAC3 f5df1921-8e4c-4622-a276-f50b13cdf1a5 d3605b2d07937c88617abf3a2080eb1e {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor"} -C3N-02253.WXS.A C3N-02253 UCEC WXS tissue_normal CPT0128800006 CPT0128800006.WholeExome.RP-1303.bam 21995186024 BAM aligned CPTAC3 ddf7338b-2336-4c1c-b180-9ca7b449acfd 964861fa0d874f458027be85b2495c2d {"aliquot_tag": "ALQ_7b4625cc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.WXS.A.hg38 C3N-02253 UCEC WXS tissue_normal CPT0128800006 b48be8e6-8b97-4641-a7ca-c5ffc7a53f10_wxs_gdc_realn.bam 30453273156 BAM harmonized CPTAC3 3b64b62d-21d2-4838-8e49-ed01c6ec15a9 5a5d06c38732bdd612397e63bdfb5f2f {"aliquot_tag": "ALQ_7b4625cc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02253.WXS.N C3N-02253 UCEC WXS blood_normal CPT0130760002 CPT0130760002.WholeExome.RP-1303.bam 27398483174 BAM aligned CPTAC3 72eff54a-8bc6-4ef0-9a1d-683a1b44e870 82b46cb644bd4fe272374be522a04721 {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal"} -C3N-02253.WXS.N.hg38 C3N-02253 UCEC WXS blood_normal CPT0130760002 0ba84a92-8c3f-4d2f-b252-94f19d64ac7f_wxs_gdc_realn.bam 37469563437 BAM harmonized CPTAC3 7a99151d-dd54-4eb7-a3a5-a985d6645a05 4efbf23657609cdc0247c973d901b4bc {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal"} -C3N-02253.WXS.T C3N-02253 UCEC WXS tumor CPT0128770006 CPT0128770006.WholeExome.RP-1303.bam 27171303951 BAM aligned CPTAC3 87f70cbd-fc53-4fd3-87ef-b2ebb5b8c79e a014297c8a32a9f354cb729b7dfd10bb {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor"} -C3N-02253.WXS.T.hg38 C3N-02253 UCEC WXS tumor CPT0128770006 64ed7413-de86-4851-b0ef-e47aa17f1a3c_wxs_gdc_realn.bam 37789502329 BAM harmonized CPTAC3 559bf42c-2893-46fc-9037-6560fb9fada4 f3519b30e2f169dc4d79e35e22faa9d7 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor"} -C3N-02255.MethArray.Green.T C3N-02255 GBM Methylation_Array tumor CPT0182550006 203271750083_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1e29408e-0159-4f7d-8689-426882b806ed 527379f8049e1a6989a083738d4e862b {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor"} -C3N-02255.MethArray.Red.T C3N-02255 GBM Methylation_Array tumor CPT0182550006 203271750083_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 f2231f6a-a57d-427d-a806-faa92a759754 0ec2ce19778381db271f0b316ee90cf5 {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor"} -C3N-02255.miRNA-Seq.S5_L003_R1.T C3N-02255 GBM miRNA-Seq tumor CPT0182550009 181219_UNC31-K00269_0173_BHYGJJBBXX_ACAGTG_S5_L003_R1_001.unaln.bam 312009928 BAM S5_L003_R1 unaligned CPTAC3 5182d41d-57f1-4726-8c6a-d25544d9a67c 89d5b9bcdde1b9fa47569e2e0d1c7a28 {"aliquot_tag": "ALQ_aa37e775", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02255.miRNA-Seq.T.hg38 C3N-02255 GBM miRNA-Seq tumor CPT0182550009 dcc3b395-59e5-41fa-aacd-d6d634f890d3_mirnaseq_gdc_realn.bam 353657463 BAM harmonized CPTAC3 cea65a8d-f014-48c9-bdea-3b924ae84479 95df2511b179575d1033ce3be20a6443 {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor"} -C3N-02255.RNA-Seq.chimeric.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.chimeric.gdc_realn.bam 142383156 BAM chimeric harmonized CPTAC3 7e28cbad-5618-45a0-a0dc-539fd39cd4f9 8a8c664649c98025cd1b16369c973c4b {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor"} -C3N-02255.RNA-Seq.genomic.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.genomic.gdc_realn.bam 7736897389 BAM genomic harmonized CPTAC3 d417852d-f81d-43f4-8f88-60b672a1be1c c46d2e6574f5833e757b49a175521ce4 {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor"} -C3N-02255.RNA-Seq.S7_L002_R1.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3704735928 FASTQ S7_L002_R1 unaligned CPTAC3 6ddd2ee9-f842-40ce-9ae4-9a0a2c165f11 75aa8bfab2a44f54f7f8ae6cc2f7cb06 {"aliquot_tag": "ALQ_aa37e775", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02255.RNA-Seq.S7_L002_R2.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3951356121 FASTQ S7_L002_R2 unaligned CPTAC3 93c7ca01-341f-4072-a3b1-aee0d1b9acda dd1d9e95c40c5c30ba71ed8c13814b8c {"aliquot_tag": "ALQ_aa37e775", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02255.RNA-Seq.transcriptome.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.transcriptome.gdc_realn.bam 8285152573 BAM transcriptome harmonized CPTAC3 f1f6f2a4-ca73-4866-9060-b7fca2d60ab8 731e92c31c134944ae14219653fd7442 {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor"} -C3N-02255.WGS.N C3N-02255 GBM WGS blood_normal CPT0182570002 CPT0182570002.WholeGenome.RP-1303.bam 55148462856 BAM aligned CPTAC3 727a41a7-7dfe-4899-acfa-6a61c64e3343 68e61783c60a1665786eb13c9181e797 {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02255.WGS.N.hg38 C3N-02255 GBM WGS blood_normal CPT0182570002 49118b25-320a-4b67-abf6-7c7907ee1533_wgs_gdc_realn.bam 80547533085 BAM harmonized CPTAC3 1e62907e-480f-4908-a82d-c54833da83c9 79545754bb61f78d8c48f7921a8a996a {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02255.WGS.T C3N-02255 GBM WGS tumor CPT0182550006 CPT0182550006.WholeGenome.RP-1303.bam 64400621366 BAM aligned CPTAC3 f1495c0f-55f5-49fd-aeeb-48fae434bd68 7c6d3f860c6fe9b781ab5191534a8964 {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor"} -C3N-02255.WGS.T.hg38 C3N-02255 GBM WGS tumor CPT0182550006 867ec78e-ed0c-4563-a551-f460cde652c4_wgs_gdc_realn.bam 94524074122 BAM harmonized CPTAC3 5cb100a4-5e0f-4a51-ba46-18be1e58160a e29f278dd652bef99aa9148014c81275 {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor"} -C3N-02255.WXS.N C3N-02255 GBM WXS blood_normal CPT0182570002 CPT0182570002.WholeExome.RP-1303.bam 26295527716 BAM aligned CPTAC3 55257136-9685-4399-b095-5370f7e68434 00a874e06a3106fae92a483ec8e1ae9e {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02255.WXS.N.hg38 C3N-02255 GBM WXS blood_normal CPT0182570002 49118b25-320a-4b67-abf6-7c7907ee1533_wxs_gdc_realn.bam 36265766002 BAM harmonized CPTAC3 adcc17ae-cf95-4352-9db6-66f4243c90c2 e1d42ef21141f9ef46687c5871177ca8 {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02255.WXS.T C3N-02255 GBM WXS tumor CPT0182550006 CPT0182550006.WholeExome.RP-1303.bam 27814633375 BAM aligned CPTAC3 4feea2de-cf18-4307-ab77-3c37ccdb7465 8940036312691eeb7c134a799782c9ab {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor"} -C3N-02255.WXS.T.hg38 C3N-02255 GBM WXS tumor CPT0182550006 867ec78e-ed0c-4563-a551-f460cde652c4_wxs_gdc_realn.bam 38850615020 BAM harmonized CPTAC3 e05748a2-dca0-4cd2-a77b-e8fb48551632 f6c6688c087a22aec2d5f13774bfbc8e {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor"} -C3N-02256.MethArray.Green.T C3N-02256 GBM Methylation_Array tumor CPT0182580006 203219650217_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 67719bc1-5682-41be-85a0-9e7cc7d3b353 01fae0017c2022ae5da8b8119fe111a1 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor"} -C3N-02256.MethArray.Red.T C3N-02256 GBM Methylation_Array tumor CPT0182580006 203219650217_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 c3d026f2-f6a4-4db3-80b5-ba703a27f212 0f66ac996e44d30049fc19375ce09ebe {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor"} -C3N-02256.miRNA-Seq.S6_L003_R1.T C3N-02256 GBM miRNA-Seq tumor CPT0182580009 181219_UNC31-K00269_0173_BHYGJJBBXX_GCCAAT_S6_L003_R1_001.unaln.bam 273657756 BAM S6_L003_R1 unaligned CPTAC3 517be51e-f72f-450e-a512-2ca6c3375efc fa366322bb6a684be83b71fa716477b3 {"aliquot_tag": "ALQ_52a723c4", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02256.miRNA-Seq.T.hg38 C3N-02256 GBM miRNA-Seq tumor CPT0182580009 61b363bf-d56a-49c8-b14c-4c6b8c7ddd4c_mirnaseq_gdc_realn.bam 305916167 BAM harmonized CPTAC3 ee6d3343-1de8-4403-a3f5-f34d6d828956 774ac13d34fff6dd5058822de4374a42 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor"} -C3N-02256.RNA-Seq.chimeric.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.chimeric.gdc_realn.bam 146882379 BAM chimeric harmonized CPTAC3 a1d8bfa9-39c9-4541-9d39-ef36308442e0 af414fbbacfc01f0bd4a68beba989bd9 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor"} -C3N-02256.RNA-Seq.genomic.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.genomic.gdc_realn.bam 9227007710 BAM genomic harmonized CPTAC3 82344652-78af-4786-a2d1-aae64753de41 e4e37838b3ea463fff78a3799b1b6a27 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor"} -C3N-02256.RNA-Seq.S8_L002_R1.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R1_001.fastq.gz 4445956614 FASTQ S8_L002_R1 unaligned CPTAC3 88d33533-fe80-485b-a2b7-a81ff8729921 3a2a94ceb35a242118341130a39be4f8 {"aliquot_tag": "ALQ_52a723c4", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02256.RNA-Seq.S8_L002_R2.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R2_001.fastq.gz 4826728081 FASTQ S8_L002_R2 unaligned CPTAC3 7855be61-2390-40e0-8b9a-54eb82b0de93 207325214f7d5425cd7c4e7d8719604d {"aliquot_tag": "ALQ_52a723c4", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02256.RNA-Seq.transcriptome.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.transcriptome.gdc_realn.bam 11891831094 BAM transcriptome harmonized CPTAC3 d2c10245-d204-4533-8629-17162d73ff7c 86a0107b9773036c080b40801a48e015 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor"} -C3N-02256.WGS.N C3N-02256 GBM WGS blood_normal CPT0182600002 CPT0182600002.WholeGenome.RP-1303.bam 62174645424 BAM aligned CPTAC3 30b0e8e5-6cb3-4357-91ef-4cc009a56349 798d5f4ce5ac1e09277e4dfadb973204 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal"} -C3N-02256.WGS.N.hg38 C3N-02256 GBM WGS blood_normal CPT0182600002 75eeaabd-f938-4f59-afb4-31dd6341c6ff_wgs_gdc_realn.bam 90940565795 BAM harmonized CPTAC3 138d8c4d-3a80-49ef-83fd-6bd8d8677c2a 1940dc7397abd8a478171f8295850106 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal"} -C3N-02256.WGS.T C3N-02256 GBM WGS tumor CPT0182580006 CPT0182580006.WholeGenome.RP-1303.bam 63526398489 BAM aligned CPTAC3 0b88a65f-0f8b-4e02-ae4c-3a9aafb3c5be 7603b51ec58ae2e9dad738e5b5560aa0 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor"} -C3N-02256.WGS.T.hg38 C3N-02256 GBM WGS tumor CPT0182580006 24815b9c-b5a1-4855-b8d2-116875c5c1bb_wgs_gdc_realn.bam 91919707825 BAM harmonized CPTAC3 29ac1663-e57e-4012-aa22-c73193db7907 782997cbb8aa05b0bb8af41c5e7ad10e {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor"} -C3N-02256.WXS.N C3N-02256 GBM WXS blood_normal CPT0182600002 CPT0182600002.WholeExome.RP-1303.bam 31413307624 BAM aligned CPTAC3 9b8205c3-d8d0-429d-afc4-26e7c95358aa b8254c1449f9b326ccb9f1f333b8c4b9 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal"} -C3N-02256.WXS.N.hg38 C3N-02256 GBM WXS blood_normal CPT0182600002 75eeaabd-f938-4f59-afb4-31dd6341c6ff_wxs_gdc_realn.bam 44430024764 BAM harmonized CPTAC3 8fef8636-d43f-4194-85bc-d2e3f909b35b 0266bd028bdee946da16885bcb20eb33 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal"} -C3N-02256.WXS.T C3N-02256 GBM WXS tumor CPT0182580006 CPT0182580006.WholeExome.RP-1303.bam 31235876071 BAM aligned CPTAC3 2e7037df-652f-465f-b1f4-5d8477549946 3699a97cdc8334c4730352dc23d35964 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor"} -C3N-02256.WXS.T.hg38 C3N-02256 GBM WXS tumor CPT0182580006 24815b9c-b5a1-4855-b8d2-116875c5c1bb_wxs_gdc_realn.bam 43176616847 BAM harmonized CPTAC3 1cd0c99e-d459-4861-a878-2dbb06a8c223 793c4f734a90ac35a1312c3c7d7dc190 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor"} -C3N-02259.MethArray.Green.T C3N-02259 GBM Methylation_Array tumor CPT0244830006 204372030070_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9b67246b-9a1e-43e4-925e-368e44840d2b d0bfe6b625037c679504d229ebc943fe {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor"} -C3N-02259.MethArray.Red.T C3N-02259 GBM Methylation_Array tumor CPT0244830006 204372030070_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 6391abdd-786e-4c87-a3fb-afad3b1052ba 1b19c24d2316f9a21c80ff1fce9d0c4d {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor"} -C3N-02259.miRNA-Seq.S40_L008_R1.T C3N-02259 GBM miRNA-Seq tumor CPT0244830013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTCAGA_S40_L008_R1_001.unaln.bam 167476066 BAM S40_L008_R1 unaligned CPTAC3 aa27227b-33ff-4471-b8dd-1b0e68037e2b 11cfc1a989f3e0986ed2a0436c7808ff {"aliquot_tag": "ALQ_6dd5c5e4", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02259.miRNA-Seq.T.hg38 C3N-02259 GBM miRNA-Seq tumor CPT0244830013 2229bd80-e569-43c6-a683-c0b2b29de25d_mirnaseq_gdc_realn.bam 184461994 BAM harmonized CPTAC3 97c8d814-ca7e-4c7e-976e-ee8a45b06e39 57d5afcc2fae00d2c0fc72cc41159a99 {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor"} -C3N-02259.RNA-Seq.chimeric.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.chimeric.gdc_realn.bam 29036519 BAM chimeric harmonized CPTAC3 45fb311b-80d5-4644-be72-0685ec2832ba cbe488a2e90266efe9f4bf24291c234e {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor"} -C3N-02259.RNA-Seq.genomic.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.genomic.gdc_realn.bam 7622139540 BAM genomic harmonized CPTAC3 828f02b1-0b7b-4249-af9e-6d094313676b 68d20bcf5d4d6585fde881ea3bce406e {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor"} -C3N-02259.RNA-Seq.S67_L008_R1.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R1_001.fastq.gz 3685625755 FASTQ S67_L008_R1 unaligned CPTAC3 611120e0-9d64-40e8-ad9f-7a7ae8092067 fea2f4e7d6e1c9406c7a22597c1b298e {"aliquot_tag": "ALQ_6dd5c5e4", "sample": "S67", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02259.RNA-Seq.S67_L008_R2.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ S67_L008_R2 unaligned CPTAC3 11e7d48b-1bfe-4892-8eca-6a22a1b8649a 6f5dee400ccd322466f6252db61a961c {"aliquot_tag": "ALQ_6dd5c5e4", "sample": "S67", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02259.RNA-Seq.transcriptome.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.transcriptome.gdc_realn.bam 9328409186 BAM transcriptome harmonized CPTAC3 41901d5d-dce6-4fe8-8582-d54fb6ae0e3d 17aa8c9dd88f9c1bf6e32c422535c514 {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor"} -C3N-02259.WGS.N C3N-02259 GBM WGS blood_normal CPT0244850002 CPT0244850002.WholeGenome.RP-2158.bam 22539611729 BAM aligned CPTAC3 651f92d8-0c95-45bc-a251-3dabda9b9c3e fe9cbb6d65312b4df2c3020df2f1feac {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal"} -C3N-02259.WGS.N.hg38 C3N-02259 GBM WGS blood_normal CPT0244850002 6ba5ae6a-aa56-4806-b46b-c46b0169f107_wgs_gdc_realn.bam 65671654026 BAM harmonized CPTAC3 80bd2584-7377-4a12-b6e7-e6f329974607 12cb4b76e3a68660e5d8b249761f219a {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal"} -C3N-02259.WGS.T C3N-02259 GBM WGS tumor CPT0244830006 CPT0244830006.WholeGenome.RP-2158.bam 22620549920 BAM aligned CPTAC3 ca024786-6ce2-4a4c-9f7d-c54c9d4221c2 3c2ede46a0b1c99900ad79edb284d398 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor"} -C3N-02259.WGS.T.hg38 C3N-02259 GBM WGS tumor CPT0244830006 e14a46ba-704d-4e84-876e-46569248569c_wgs_gdc_realn.bam 67217998804 BAM harmonized CPTAC3 9ab46c4f-c4af-4fba-aa78-9a124221b6a3 53af72edb281dcebc00df3933c8c8aa9 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor"} -C3N-02259.WXS.N C3N-02259 GBM WXS blood_normal CPT0244850002 CPT0244850002.WholeExome.RP-1303.bam 23358305597 BAM aligned CPTAC3 1eb497b2-eed1-45bb-b46b-a6963d996134 9573158a4ec44c1701a082532bde38a5 {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal"} -C3N-02259.WXS.N.hg38 C3N-02259 GBM WXS blood_normal CPT0244850002 6ba5ae6a-aa56-4806-b46b-c46b0169f107_wxs_gdc_realn.bam 30780507901 BAM harmonized CPTAC3 4e909555-b3b3-4165-bfb3-76380c7e964e cb3bd5f416de5dc7948fd159730a4091 {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal"} -C3N-02259.WXS.T C3N-02259 GBM WXS tumor CPT0244830006 CPT0244830006.WholeExome.RP-1303.bam 23855654353 BAM aligned CPTAC3 71da1801-69f7-40c3-8e26-961f3326e2c0 def4887c4dd8f894577c3b6f7eea2639 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor"} -C3N-02259.WXS.T.hg38 C3N-02259 GBM WXS tumor CPT0244830006 e14a46ba-704d-4e84-876e-46569248569c_wxs_gdc_realn.bam 33697360977 BAM harmonized CPTAC3 2a83fa0d-8c52-4120-a68e-ed04ee910d99 987e3afebfb4fe645bd629dfec7dac26 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor"} -C3N-02261.MethArray.Green.A C3N-02261 CCRCC Methylation_Array tissue_normal CPT0381600009 205589730117_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8070acff-3c77-4c4c-86af-395902462b88 731c382fd857dbf5ef7f7a4608569bb5 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.MethArray.Green.T C3N-02261 CCRCC Methylation_Array tumor CPT0381550009 205549600088_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 f869f8cf-bcb8-4cdf-affb-efb5054545c3 b33fe35604f31b755f0ebc8d24eb34d6 {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor"} -C3N-02261.MethArray.Red.A C3N-02261 CCRCC Methylation_Array tissue_normal CPT0381600009 205589730117_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 647f7451-d5a5-4a48-b5ca-d914d4920fd7 86101196d51769cec7b3afe828307839 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.MethArray.Red.T C3N-02261 CCRCC Methylation_Array tumor CPT0381550009 205549600088_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 2c4ba4a9-b1d2-4e9b-b20a-2198a6c1d8a0 60c13bca87a3cd1bb35799c9da982774 {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor"} -C3N-02261.miRNA-Seq.A.hg38 C3N-02261 CCRCC miRNA-Seq tissue_normal CPT0381600006 74919460-7a84-446c-b4d1-a87e92f22ebf_mirnaseq_gdc_realn.bam 257740456 BAM harmonized CPTAC3 65996faf-3402-46d2-86ee-b09eeba4858a 910e161f0a38ba3549c04037a2113700 {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.miRNA-Seq.S3_L001_R1.T C3N-02261 CCRCC miRNA-Seq tumor CPT0381550006 210111_UNC32-K00270_0270_AHJ5LKBBXY_AGTTCC_S3_L001_R1_001.unaln.bam 290238407 BAM S3_L001_R1 unaligned CPTAC3 2c91d7f9-60b7-42ef-8162-b5bfbd1190a7 07f0c8cf53af77725edc597cc4d3d326 {"aliquot_tag": "ALQ_2596c8ff", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02261.miRNA-Seq.S5_L001_R1.A C3N-02261 CCRCC miRNA-Seq tissue_normal CPT0381600006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATGTCA_S5_L001_R1_001.unaln.bam 235490229 BAM S5_L001_R1 unaligned CPTAC3 b2a532d8-eca6-4d6a-9290-fe5787877590 4bc48159b30d7b14a8ea41c7ca1698cb {"aliquot_tag": "ALQ_6be23521", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.miRNA-Seq.T.hg38 C3N-02261 CCRCC miRNA-Seq tumor CPT0381550006 e954a129-7d0c-4c7f-90e6-760f531c02cf_mirnaseq_gdc_realn.bam 310243974 BAM harmonized CPTAC3 67146395-2ed8-48cd-9bed-4152114bc544 b82ad165fb625a11d1347773de8b3a52 {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor"} -C3N-02261.RNA-Seq.chimeric.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.chimeric.gdc_realn.bam 393937091 BAM chimeric harmonized CPTAC3 c10d2309-b2d6-4a8b-875e-43cb66ce210d 24b0315e7fd8ff58e2b94009e579420a {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.RNA-Seq.chimeric.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.chimeric.gdc_realn.bam 341106313 BAM chimeric harmonized CPTAC3 93755e53-ed0b-49a2-b067-4b13334dae32 485eb458e9aafb627410930d260d2f4f {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor"} -C3N-02261.RNA-Seq.genomic.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.genomic.gdc_realn.bam 8132970039 BAM genomic harmonized CPTAC3 a123415e-841f-496c-bb99-4665091118ca bf5eee740ab41276071b64bbcb1d4f03 {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.RNA-Seq.genomic.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.genomic.gdc_realn.bam 7880672677 BAM genomic harmonized CPTAC3 873cbba5-d15c-4553-aa75-1024204806db b5b9ea8cf9fb085d1e167d4860328c45 {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor"} -C3N-02261.RNA-Seq.S23_L006_R1.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3830631847 FASTQ S23_L006_R1 unaligned CPTAC3 815b2149-ece4-4c82-8dfb-63b2d0af96e9 ce603dafd0d871cfd9b1c57fbac98789 {"aliquot_tag": "ALQ_6be23521", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.RNA-Seq.S23_L006_R2.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4205662996 FASTQ S23_L006_R2 unaligned CPTAC3 c027bd21-be0e-4223-96f4-1289dcdef549 b7fb6fbab81707bdf760b6c49177f8d4 {"aliquot_tag": "ALQ_6be23521", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.RNA-Seq.S24_L006_R1.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3759868376 FASTQ S24_L006_R1 unaligned CPTAC3 e42c45c9-4e7a-4ab5-98f0-901f0e838227 8343b1db3bed5c9964dd29c6bf85ea6a {"aliquot_tag": "ALQ_2596c8ff", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02261.RNA-Seq.S24_L006_R2.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4267385037 FASTQ S24_L006_R2 unaligned CPTAC3 86834635-3448-41b6-8b88-90c7ed3edf2c bd699d7792705491314bd80da997c59e {"aliquot_tag": "ALQ_2596c8ff", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02261.RNA-Seq.transcriptome.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.transcriptome.gdc_realn.bam 9196583571 BAM transcriptome harmonized CPTAC3 7ac481eb-1107-4472-8c33-bfe4b3012b2e dd04465d739c7a1f05666ad5a36e14b1 {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.RNA-Seq.transcriptome.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.transcriptome.gdc_realn.bam 8854136088 BAM transcriptome harmonized CPTAC3 a9cbf911-4245-40dd-a024-4103fe3270bd e33575fc9b5342f5d51e6df85b2fbd17 {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor"} -C3N-02261.WGS.N C3N-02261 CCRCC WGS blood_normal CPT0381730002 CPT0381730002.WholeGenome.RP-2158.bam 24137556197 BAM aligned CPTAC3 94c99a5b-90e5-4236-b65b-87a7809b6d84 f8abb11a9cf2cc2fc7610053c932ab05 {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02261.WGS.N.hg38 C3N-02261 CCRCC WGS blood_normal CPT0381730002 06132899-2648-4344-b26a-61e507aaf27c_wgs_gdc_realn.bam 70371090283 BAM harmonized CPTAC3 71556c23-559a-4f70-979b-c2144aa2321a 95c6a899f3ad1a4024a0c5f73850ec69 {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02261.WGS.T C3N-02261 CCRCC WGS tumor CPT0381550009 CPT0381550009.WholeGenome.RP-2158.bam 21913075787 BAM aligned CPTAC3 a40f848a-7aff-4654-b943-d04335d9de1c 4b45574f5baf0727fdb8e7548bc02fbd {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor"} -C3N-02261.WGS.T.hg38 C3N-02261 CCRCC WGS tumor CPT0381550009 435a9d86-5419-4b91-8409-e11bdc8b947d_wgs_gdc_realn.bam 66502869082 BAM harmonized CPTAC3 7218687d-4e69-45b8-8a38-08e199c0dd56 951e74c5068c3119e7fb129db3ad801c {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor"} -C3N-02261.WXS.A C3N-02261 CCRCC WXS tissue_normal CPT0381600009 CPT0381600009.WholeExome.RP-1303.bam 20500242641 BAM aligned CPTAC3 5efc52a1-fa9f-4703-9656-fe83c063c10a 664af795ffb2124fe9be4516334721e2 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.WXS.A.hg38 C3N-02261 CCRCC WXS tissue_normal CPT0381600009 8f9c91fd-069d-438c-a91f-c9d26c11e4b6_wxs_gdc_realn.bam 28111421870 BAM harmonized CPTAC3 5aa01370-1091-473f-8d4e-d2835219ef60 1670c126862bc2e4b34523b94a2bced6 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02261.WXS.N C3N-02261 CCRCC WXS blood_normal CPT0381730002 CPT0381730002.WholeExome.RP-1303.bam 27440857031 BAM aligned CPTAC3 d17d94d6-00b8-4e43-b653-6d875144d11d 57d1fdc1fc2f0c597374e8a40800eabb {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02261.WXS.N.hg38 C3N-02261 CCRCC WXS blood_normal CPT0381730002 06132899-2648-4344-b26a-61e507aaf27c_wxs_gdc_realn.bam 37531620547 BAM harmonized CPTAC3 9ca3e66d-56ce-4697-9f34-125f11851d4a 1b66314ef9b001490f73ad2ec4089bd0 {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02261.WXS.T C3N-02261 CCRCC WXS tumor CPT0381550009 CPT0381550009.WholeExome.RP-1303.bam 24514101071 BAM aligned CPTAC3 e640e5f9-7123-4c1f-a472-e173102a9b7e bc2accb7314f3e55ba385b3d73e5cdd2 {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor"} -C3N-02261.WXS.T.hg38 C3N-02261 CCRCC WXS tumor CPT0381550009 435a9d86-5419-4b91-8409-e11bdc8b947d_wxs_gdc_realn.bam 33938883650 BAM harmonized CPTAC3 3f2b850b-1bfa-4e5f-901a-efc75c21efc1 544896e9ad8ea9dc7952e43ea35b638f {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor"} -C3N-02262.MethArray.Green.T C3N-02262 CCRCC Methylation_Array tumor CPT0188140011 203219640102_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c1f7eae6-a82a-46f4-9d4b-997a103bbffb 41b347a576e31d3981eab87b11a2bb4e {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor"} -C3N-02262.MethArray.Red.T C3N-02262 CCRCC Methylation_Array tumor CPT0188140011 203219640102_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 ea84492b-2b2d-4330-aa0f-84fb4a13046c 564b330a55805fceefd07bd7f887213c {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor"} -C3N-02262.miRNA-Seq.S33_L005_R1.T C3N-02262 CCRCC miRNA-Seq tumor CPT0188140009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L005_R1_001.unaln.bam 226634328 BAM S33_L005_R1 unaligned CPTAC3 924827c0-8a3c-48c2-ae1e-91858389a065 938acf5ccfcc40fb7fd7b9e371110307 {"aliquot_tag": "ALQ_a8b6d39d", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02262.miRNA-Seq.T.hg38 C3N-02262 CCRCC miRNA-Seq tumor CPT0188140009 f21056f2-ea37-4161-9619-ba5343c80624_mirnaseq_gdc_realn.bam 242644297 BAM harmonized CPTAC3 225aef3d-8429-4603-b018-9fd16f90ae91 45ed65a5649563c5059be2774aa23445 {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor"} -C3N-02262.RNA-Seq.chimeric.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.chimeric.gdc_realn.bam 30853967 BAM chimeric harmonized CPTAC3 95081f2d-b45c-4dd5-a565-d988e0f6ed09 2855cd43fcd05256b398ef8fe9e40dff {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor"} -C3N-02262.RNA-Seq.genomic.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.genomic.gdc_realn.bam 7174577689 BAM genomic harmonized CPTAC3 bfb6d370-c46d-4479-8eee-96b09df1a164 91f9081f4dbbee02bff6de3b412c4d59 {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor"} -C3N-02262.RNA-Seq.S21_L006_R1.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3383668401 FASTQ S21_L006_R1 unaligned CPTAC3 5500f194-9b8d-439f-8e66-d8e8c01ce445 4389ccb94eee61a8a97a2bab48075ced {"aliquot_tag": "ALQ_a8b6d39d", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02262.RNA-Seq.S21_L006_R2.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3615632431 FASTQ S21_L006_R2 unaligned CPTAC3 089b6abe-2fc7-4878-97b8-cf6f55a06005 a9e7880ac1f9f06092538f23565bb60b {"aliquot_tag": "ALQ_a8b6d39d", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02262.RNA-Seq.transcriptome.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.transcriptome.gdc_realn.bam 9621366897 BAM transcriptome harmonized CPTAC3 d7c88833-50b3-4c86-a65b-f30bc2491c54 c1d02e77f33d85c8e9492fb7ecaf9d8f {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor"} -C3N-02262.WGS.N C3N-02262 CCRCC WGS blood_normal CPT0188170002 CPT0188170002.WholeGenome.RP-1303.bam 58426763747 BAM aligned CPTAC3 7dc08de4-c05c-4590-9712-fe2f32fcf103 995206aa457e5ef4079f84328b76baa0 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02262.WGS.N.hg38 C3N-02262 CCRCC WGS blood_normal CPT0188170002 4b1e0be9-79d2-48bd-bb97-e8539f79c106_wgs_gdc_realn.bam 84665084675 BAM harmonized CPTAC3 b5e3c796-78ce-473f-80ec-55314ba17b06 3c078a95086073eb2be6ca74af6bd3b9 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02262.WGS.T C3N-02262 CCRCC WGS tumor CPT0188140011 CPT0188140011.WholeGenome.RP-1303.bam 54859323733 BAM aligned CPTAC3 17e55631-3b41-41b6-93cd-c8ec2f265dea f28cf396eedfece3d8a5e64b5d1596fa {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor"} -C3N-02262.WGS.T.hg38 C3N-02262 CCRCC WGS tumor CPT0188140011 2e34dae3-033f-4ce6-b20a-45eefd4a1de2_wgs_gdc_realn.bam 80430271039 BAM harmonized CPTAC3 40618f99-a277-4d57-bc14-ee159246bed2 ee236633cbcefbff13d0b65f5ea5856f {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor"} -C3N-02262.WXS.N C3N-02262 CCRCC WXS blood_normal CPT0188170002 CPT0188170002.WholeExome.RP-1303.bam 21086913487 BAM aligned CPTAC3 84c07cb6-421f-4d9b-9b53-f8f035c839f5 0fa07f68089013cf8a3f3dc340a3eb87 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02262.WXS.N.hg38 C3N-02262 CCRCC WXS blood_normal CPT0188170002 4b1e0be9-79d2-48bd-bb97-e8539f79c106_wxs_gdc_realn.bam 28927464383 BAM harmonized CPTAC3 122d407a-0b01-4f0e-84c2-99493fe0754d e02ba1eaad675bc5f81e27fc2d00f589 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02262.WXS.T C3N-02262 CCRCC WXS tumor CPT0188140011 CPT0188140011.WholeExome.RP-1303.bam 25272079981 BAM aligned CPTAC3 2f7ee254-7846-4c43-8e05-4fa0b9da818b 642f6646e6729f28250ea15498d493ae {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor"} -C3N-02262.WXS.T.hg38 C3N-02262 CCRCC WXS tumor CPT0188140011 2e34dae3-033f-4ce6-b20a-45eefd4a1de2_wxs_gdc_realn.bam 34780418586 BAM harmonized CPTAC3 a4e1c860-cff3-4fa3-95f4-16fb30ff3a31 81588fde526d64f45764b5a63d91d60d {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor"} -C3N-02263.MethArray.Green.A C3N-02263 CCRCC Methylation_Array tissue_normal CPT0188810006 204930640120_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c024c074-45cb-4681-b6da-55195ac1fffb f0eb0238bf41f27822d19eca40d24ea6 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.MethArray.Green.T C3N-02263 CCRCC Methylation_Array tumor CPT0188180006 203028200100_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 52e555e5-965a-4348-ad52-6ad8f9dae945 5b7ef85cb806632c0f90268b16253cbc {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor"} -C3N-02263.MethArray.Red.A C3N-02263 CCRCC Methylation_Array tissue_normal CPT0188810006 204930640120_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 badea235-d22e-4eac-a5d0-65714ea65ae1 1892ef00f624aa3150539be30b491fc0 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.MethArray.Red.T C3N-02263 CCRCC Methylation_Array tumor CPT0188180006 203028200100_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 f6910114-051e-4e4b-a3f7-fa9f8861b05a 02aa0d6e837b91c1b5e7563ae30763da {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor"} -C3N-02263.miRNA-Seq.A.hg38 C3N-02263 CCRCC miRNA-Seq tissue_normal CPT0188810009 e17ab331-5a79-461a-9719-f34e590c0fd3_mirnaseq_gdc_realn.bam 212509525 BAM harmonized CPTAC3 ef4922f8-696c-419b-a7ce-9b7bdfd239d9 529e132eeca1c07e6a474bdef97dc3d1 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.miRNA-Seq.S23_L005_R1.T C3N-02263 CCRCC miRNA-Seq tumor CPT0188180009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L005_R1_001.unaln.bam 222888114 BAM S23_L005_R1 unaligned CPTAC3 bc25cd24-09ed-4923-98d9-be60b04ab18f 5de82006ed20f2c8bee4459dde1d438e {"aliquot_tag": "ALQ_6d463e9c", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02263.miRNA-Seq.S9_L001_R1.A C3N-02263 CCRCC miRNA-Seq tissue_normal CPT0188810009 190206_UNC31-K00269_0191_AH2WY5BBXY_TAATCG_S9_L001_R1_001.unaln.bam 190796237 BAM S9_L001_R1 unaligned CPTAC3 adbac92d-cf66-4b97-ae09-95cb9dda1a98 46a5836cf7556bf91159674a0597f63c {"aliquot_tag": "ALQ_47590d25", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.miRNA-Seq.T.hg38 C3N-02263 CCRCC miRNA-Seq tumor CPT0188180009 9878c9ca-a917-4a84-8fca-34558c18510a_mirnaseq_gdc_realn.bam 244577516 BAM harmonized CPTAC3 45314e17-cdd1-4124-8bfb-db04bcaadb42 3271f0ad20ab17ca024fe15e061fb8ac {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02263.RNA-Seq.chimeric.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.chimeric.gdc_realn.bam 114289125 BAM chimeric harmonized CPTAC3 b51038ea-5721-4583-a84a-e00939786095 e5b05e205f6e5c017d0cf95a8522b561 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.RNA-Seq.chimeric.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.chimeric.gdc_realn.bam 34508276 BAM chimeric harmonized CPTAC3 f3d3bd07-ac2d-44be-8c7c-82810811f404 e81d7a62ca0b4114642f28dbeccdf835 {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02263.RNA-Seq.genomic.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.genomic.gdc_realn.bam 9237415494 BAM genomic harmonized CPTAC3 24d8c628-2045-4b97-873e-7954377900a5 09f6c815904e8e93f2852b3809de9681 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.RNA-Seq.genomic.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.genomic.gdc_realn.bam 6879379309 BAM genomic harmonized CPTAC3 ae9faef0-97bc-433c-8f9d-3b026ba6b927 31056f5559d07a6846dce813ded77d80 {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02263.RNA-Seq.S24_L006_R1.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3302388212 FASTQ S24_L006_R1 unaligned CPTAC3 fc0b8a08-6cb6-458a-9e2e-85588c256f8c c9592492e364b7ae4525d1a8ff9c098e {"aliquot_tag": "ALQ_6d463e9c", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02263.RNA-Seq.S24_L006_R2.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3536214219 FASTQ S24_L006_R2 unaligned CPTAC3 f2bad5e0-e9bb-42ab-bfec-ab8b04efd56f e792c803acb2433cb424e8ccdbb10497 {"aliquot_tag": "ALQ_6d463e9c", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02263.RNA-Seq.S4_L001_R1.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4198386442 FASTQ S4_L001_R1 unaligned CPTAC3 3756ce64-3671-44a0-9521-5b6fb373bd1a 5ff89d5412ed9ba89d6fbfc36db4e5ce {"aliquot_tag": "ALQ_47590d25", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.RNA-Seq.S4_L001_R2.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4337643022 FASTQ S4_L001_R2 unaligned CPTAC3 311f06c2-9d4b-4d9d-b914-66108d4118f1 3dfdc73d493c8d95c1424eddebf651a5 {"aliquot_tag": "ALQ_47590d25", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.RNA-Seq.transcriptome.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.transcriptome.gdc_realn.bam 9596779878 BAM transcriptome harmonized CPTAC3 0accd542-8561-46e6-bdff-5e65438d1a0b 4696ea9d43aed3019ae3e72b4c178e49 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.RNA-Seq.transcriptome.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.transcriptome.gdc_realn.bam 9215618072 BAM transcriptome harmonized CPTAC3 da3ecd54-4f39-4ca7-8836-2a428f54e9f6 c8d803ca8f88b34760a4d4943c31680f {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02263.WGS.N C3N-02263 CCRCC WGS blood_normal CPT0188840002 CPT0188840002.WholeGenome.RP-1303.bam 61869406783 BAM aligned CPTAC3 41d362bd-e6bc-47b8-a6d0-797f7800596d e19582d99ac5104efb2e1da6d1a30ad8 {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02263.WGS.N.hg38 C3N-02263 CCRCC WGS blood_normal CPT0188840002 ae9709b4-e76f-46e6-a19e-b026f678d141_wgs_gdc_realn.bam 90978485038 BAM harmonized CPTAC3 c14b8d75-6020-4939-bb47-d2a719366d87 5319d1fbc2790439e2b634805fd5406f {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02263.WGS.T C3N-02263 CCRCC WGS tumor CPT0188180006 CPT0188180006.WholeGenome.RP-1303.bam 58951215721 BAM aligned CPTAC3 0ca56eec-0aac-46e1-9542-fe186cd002ba 18d63f5f91afe2988597a2036662ae5b {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor"} -C3N-02263.WGS.T.hg38 C3N-02263 CCRCC WGS tumor CPT0188180006 b1ccb62f-e55a-4f39-8a77-d5e111bf9be1_wgs_gdc_realn.bam 86795756546 BAM harmonized CPTAC3 fbfdd682-d8bc-44ce-9c0b-c2fbb3ac317c 0badecbbd0156cf7d470d26dcae013ba {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor"} -C3N-02263.WXS.A C3N-02263 CCRCC WXS tissue_normal CPT0188810006 CPT0188810006.WholeExome.RP-1303.bam 25870926321 BAM aligned CPTAC3 4b065ae1-3756-4fc5-8463-08f3e2c0c24f ec504d917d935a2104b63627103b5fb1 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.WXS.A.hg38 C3N-02263 CCRCC WXS tissue_normal CPT0188810006 fa1b6026-026d-42a8-b15a-5f3fa1daea86_wxs_gdc_realn.bam 35720238602 BAM harmonized CPTAC3 b92a2844-b59c-4265-aab7-bbb87b92f35c 76084a34232ed51f0cd1a05fb33bab77 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02263.WXS.N C3N-02263 CCRCC WXS blood_normal CPT0188840002 CPT0188840002.WholeExome.RP-1303.bam 23683676503 BAM aligned CPTAC3 009bfdf2-ccab-4704-9147-908fd8b2b630 1a6ae587a26fac98d65a69b85df3bcf3 {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02263.WXS.N.hg38 C3N-02263 CCRCC WXS blood_normal CPT0188840002 ae9709b4-e76f-46e6-a19e-b026f678d141_wxs_gdc_realn.bam 32312214793 BAM harmonized CPTAC3 92b35938-6255-4558-b877-55e346e8f210 bfa9c94cdfd66c67d1bcc688547230bf {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02263.WXS.T C3N-02263 CCRCC WXS tumor CPT0188180006 CPT0188180006.WholeExome.RP-1303.bam 24201504384 BAM aligned CPTAC3 6210463d-9254-4933-95d0-bf06372a4448 adf37f2c93c39bd3f8b12e95dbaf05b3 {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor"} -C3N-02263.WXS.T.hg38 C3N-02263 CCRCC WXS tumor CPT0188180006 b1ccb62f-e55a-4f39-8a77-d5e111bf9be1_wxs_gdc_realn.bam 33078636916 BAM harmonized CPTAC3 9d3c1aa2-f8c5-49e7-a423-4f8d0dc54f67 59c969d0e813af60504c61d9ef2bcd3f {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor"} -C3N-02264.MethArray.Green.T C3N-02264 CCRCC Methylation_Array tumor CPT0188850006 203220070100_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 88a73fe4-b933-4452-8b60-05cfb49d8cec 9254c1078906a27de3c4604f563a967b {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor"} -C3N-02264.MethArray.Red.T C3N-02264 CCRCC Methylation_Array tumor CPT0188850006 203220070100_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 dad23d5d-b483-455d-a6c4-6e645d0f2fa1 3a11aa0a7214fca159578f6ce2f4c3b0 {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor"} -C3N-02264.miRNA-Seq.S34_L005_R1.T C3N-02264 CCRCC miRNA-Seq tumor CPT0188850009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L005_R1_001.unaln.bam 172412234 BAM S34_L005_R1 unaligned CPTAC3 557bebc5-6df9-48d7-a4ad-eba8b7ea2fa3 b171d57fe090f670e1667b17053aadd8 {"aliquot_tag": "ALQ_b2d9abe5", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02264.miRNA-Seq.T.hg38 C3N-02264 CCRCC miRNA-Seq tumor CPT0188850009 dfa0a515-1f66-4e82-9467-e7a0ae787ecc_mirnaseq_gdc_realn.bam 193201550 BAM harmonized CPTAC3 2e1064c1-c6be-4aa8-9b86-2a5a2dbeb473 7b1b6bedbdf98471efcb57ddcb3dd4e8 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor"} -C3N-02264.RNA-Seq.chimeric.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.chimeric.gdc_realn.bam 29722745 BAM chimeric harmonized CPTAC3 82bb73c1-e3fe-45f5-859f-b1d8085e11a7 884c816e409da63b43857253facd8ad0 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor"} -C3N-02264.RNA-Seq.genomic.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.genomic.gdc_realn.bam 6540321472 BAM genomic harmonized CPTAC3 359d42b6-7e7a-41ae-9fb4-793483bd09b8 5e96ecbc94194b5ab5993b4b7062d6f8 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor"} -C3N-02264.RNA-Seq.S3_L007_R1.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R1_001.fastq.gz 2914547264 FASTQ S3_L007_R1 unaligned CPTAC3 3fc70ab6-da5a-4d27-8aa1-e3cdf7829d70 3c62dfc725870db2075449a2252c6f41 {"aliquot_tag": "ALQ_b2d9abe5", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02264.RNA-Seq.S3_L007_R2.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3100480885 FASTQ S3_L007_R2 unaligned CPTAC3 38c8d9d6-d958-4753-af11-080eb31b45f9 3ffd3c2d1c59b312fab34cf7c1764597 {"aliquot_tag": "ALQ_b2d9abe5", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02264.RNA-Seq.transcriptome.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.transcriptome.gdc_realn.bam 8290093801 BAM transcriptome harmonized CPTAC3 51cb1b28-746e-4fc7-9ec0-d2318d58918f f4f5b2064e6ee2cc618c95bf64207458 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor"} -C3N-02264.WGS.N C3N-02264 CCRCC WGS blood_normal CPT0188890002 CPT0188890002.WholeGenome.RP-1303.bam 55335709349 BAM aligned CPTAC3 279ab7f4-6c5c-4548-8d43-09d4a3cb494e f9195f9a9d36f69ce5d8330137474532 {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02264.WGS.N.hg38 C3N-02264 CCRCC WGS blood_normal CPT0188890002 3ef639b1-6ede-4f5d-9a2b-a461409cb1c4_wgs_gdc_realn.bam 81412544331 BAM harmonized CPTAC3 4b245348-5cf9-4351-a136-3b65a8641f6c d9b7d814d5594005f478f4e7604083ba {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02264.WGS.T C3N-02264 CCRCC WGS tumor CPT0188850006 CPT0188850006.WholeGenome.RP-1303.bam 119787345990 BAM aligned CPTAC3 0f8509e7-da00-4888-98e2-383d3122dbb6 cf9cdcfb6d7d4a413fc50948006aee3e {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor"} -C3N-02264.WGS.T.hg38 C3N-02264 CCRCC WGS tumor CPT0188850006 8c388929-8867-4312-9e3e-a376ee1571a6_wgs_gdc_realn.bam 174968137420 BAM harmonized CPTAC3 b95946af-6e1f-4fa3-ad22-7e68fd32b879 d7d31d7d7b4f7d3ece3812159afb66e3 {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor"} -C3N-02264.WXS.N C3N-02264 CCRCC WXS blood_normal CPT0188890002 CPT0188890002.WholeExome.RP-1303.bam 27897082130 BAM aligned CPTAC3 90bf6495-0e26-4b96-a50d-c7325178748b 853ce2255caad11d590ba9faa033a0fe {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02264.WXS.N.hg38 C3N-02264 CCRCC WXS blood_normal CPT0188890002 3ef639b1-6ede-4f5d-9a2b-a461409cb1c4_wxs_gdc_realn.bam 38982207568 BAM harmonized CPTAC3 78a4fe01-a7f0-4bea-b439-a20f2fd36d28 70607d878a3dc8372cc63f3813bbab3a {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02264.WXS.T C3N-02264 CCRCC WXS tumor CPT0188850006 CPT0188850006.WholeExome.RP-1303.bam 25704828669 BAM aligned CPTAC3 0f226745-08f7-49be-9897-55f3cd4f1faf ce0267276f80975d9142ac30e6533196 {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor"} -C3N-02264.WXS.T.hg38 C3N-02264 CCRCC WXS tumor CPT0188850006 8c388929-8867-4312-9e3e-a376ee1571a6_wxs_gdc_realn.bam 34910790770 BAM harmonized CPTAC3 023895c8-df6e-4b84-adae-2552278195af 7195b11ff11bf66dfdf7281b21f30b9e {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor"} -C3N-02265.MethArray.Green.A C3N-02265 CCRCC Methylation_Array tissue_normal CPT0188910009 204930640061_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2b4b3a1d-6b26-4d56-b5fd-232cee56e349 d74baa03a6ec27f64813c7e0b339fafb {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.MethArray.Green.T C3N-02265 CCRCC Methylation_Array tumor CPT0188900006 203219650005_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 180ca6b1-bd47-4aa1-9d74-321a7a5e89ce d5becb66b0e457654c11b149c055bffa {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor"} -C3N-02265.MethArray.Red.A C3N-02265 CCRCC Methylation_Array tissue_normal CPT0188910009 204930640061_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 f7b3c665-c69b-4150-9482-043499b6ebcb 368a105b26b57933c51def28a36adb8b {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.MethArray.Red.T C3N-02265 CCRCC Methylation_Array tumor CPT0188900006 203219650005_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b7e49c4d-d3bb-43d2-b741-e027072a8251 25d5e0ffb8745e0c66131a8991e661a9 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor"} -C3N-02265.miRNA-Seq.A.hg38 C3N-02265 CCRCC miRNA-Seq tissue_normal CPT0188910006 9a50f027-5e54-4ec9-b372-6246419ef1b5_mirnaseq_gdc_realn.bam 189271401 BAM harmonized CPTAC3 08766175-0c34-4225-8b98-b3f7054a44b3 37f52bb677addfa6a2978690e3819536 {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.miRNA-Seq.S24_L005_R1.T C3N-02265 CCRCC miRNA-Seq tumor CPT0188900009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L005_R1_001.unaln.bam 182542044 BAM S24_L005_R1 unaligned CPTAC3 1bb9a3aa-95b4-4ebe-bf58-06d6c9c72cef bc2bc0bd90518788d294ab8d39231367 {"aliquot_tag": "ALQ_b165f730", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02265.miRNA-Seq.S44_L002_R1.A C3N-02265 CCRCC miRNA-Seq tissue_normal CPT0188910006 190206_UNC31-K00269_0191_AH2WY5BBXY_ACAGTG_S44_L002_R1_001.unaln.bam 170010066 BAM S44_L002_R1 unaligned CPTAC3 958b91b2-026e-4ce3-b1a5-e80fbd2a86c8 f4266579d5a881a6e09803dc6f73f8c4 {"aliquot_tag": "ALQ_1cbac311", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.miRNA-Seq.T.hg38 C3N-02265 CCRCC miRNA-Seq tumor CPT0188900009 a6e66daa-f52f-4a46-abb9-675bb0fa057d_mirnaseq_gdc_realn.bam 201456997 BAM harmonized CPTAC3 8a3fbc37-84fb-4218-9781-bd27d83987de cece5f8e7af4b8b4cc987bcb3bf99085 {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor"} -C3N-02265.RNA-Seq.chimeric.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.chimeric.gdc_realn.bam 53376536 BAM chimeric harmonized CPTAC3 7bd1e49b-dda3-4ec9-a69c-fe00c92ffef0 7a86171ffb7f3641d8a1bf3f7a32416e {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.RNA-Seq.chimeric.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.chimeric.gdc_realn.bam 47739758 BAM chimeric harmonized CPTAC3 b3222eed-336d-401a-9267-b80e9d16da2a 8f056f0eb8f921407a0c69e4ebfd925a {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor"} -C3N-02265.RNA-Seq.genomic.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.genomic.gdc_realn.bam 7597041692 BAM genomic harmonized CPTAC3 64e016e8-c611-4b3a-bd19-4575d4d86f77 b1b1c0535577abbf77bbbe3c354f7512 {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.RNA-Seq.genomic.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.genomic.gdc_realn.bam 10418031407 BAM genomic harmonized CPTAC3 dd7b772f-efd7-43a5-b2cc-18c354b5e952 bbbd74fe891c2692e222efde1860d1c4 {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor"} -C3N-02265.RNA-Seq.S15_L004_R1.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R1_001.fastq.gz 3442718189 FASTQ S15_L004_R1 unaligned CPTAC3 473686e3-9e58-4ad7-bd58-24861cb08a95 41eb0107334da9dc81a72dfce6a2445c {"aliquot_tag": "ALQ_1cbac311", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.RNA-Seq.S15_L004_R2.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R2_001.fastq.gz 3806720586 FASTQ S15_L004_R2 unaligned CPTAC3 c417302d-9f31-4691-adce-8a6e72606cc4 2f0ed449abe1f87f42d3850ae793fd2e {"aliquot_tag": "ALQ_1cbac311", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.RNA-Seq.S2_L007_R1.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 5092665356 FASTQ S2_L007_R1 unaligned CPTAC3 8bb415e9-7eae-433f-9559-4ac9d7b7e5c5 af798c7d1281d6cd87b964ac4ebeeb08 {"aliquot_tag": "ALQ_b165f730", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02265.RNA-Seq.S2_L007_R2.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 5390866218 FASTQ S2_L007_R2 unaligned CPTAC3 3ed06e16-0850-4521-977d-11412be032c3 c3205dafafb9ad3c47ae843bad90d426 {"aliquot_tag": "ALQ_b165f730", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02265.RNA-Seq.transcriptome.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.transcriptome.gdc_realn.bam 8415930009 BAM transcriptome harmonized CPTAC3 18289c4c-01c6-4928-b8d8-8ade2d079aca a59d6e97331ee989fe05c5392c4b8677 {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.RNA-Seq.transcriptome.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.transcriptome.gdc_realn.bam 13608146017 BAM transcriptome harmonized CPTAC3 25bb9810-ba09-4ce9-9a66-6b18d2134027 26cbbc101b22f3d20c613134a728b65e {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor"} -C3N-02265.WGS.N C3N-02265 CCRCC WGS blood_normal CPT0188940002 CPT0188940002.WholeGenome.RP-1303.bam 104776168397 BAM aligned CPTAC3 d961c3a9-a812-4115-999a-0b82ac6731a6 01deb20ffdcf1ee3f2023a3555aedcc9 {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal"} -C3N-02265.WGS.N.hg38 C3N-02265 CCRCC WGS blood_normal CPT0188940002 40f13e63-757b-43af-a946-8e2bdab7163d_wgs_gdc_realn.bam 151479198582 BAM harmonized CPTAC3 140f3f69-4cdb-4705-9e70-86fe2efc1420 f5fcebae06f175df7affcb101a59375f {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal"} -C3N-02265.WGS.T C3N-02265 CCRCC WGS tumor CPT0188900006 CPT0188900006.WholeGenome.RP-1303.bam 125237552249 BAM aligned CPTAC3 f0782c34-97b6-4d07-bf94-b8f8bfc06b1f ae2d7b61c2f45603d45306309d69173c {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor"} -C3N-02265.WGS.T.hg38 C3N-02265 CCRCC WGS tumor CPT0188900006 3f769f5f-911e-4331-9517-b6d0e852d377_wgs_gdc_realn.bam 183386497071 BAM harmonized CPTAC3 c62d3ed2-0d3e-497e-bac6-70450b01f452 cf098fa749b0c1f35c75ff3caf613b91 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor"} -C3N-02265.WXS.A C3N-02265 CCRCC WXS tissue_normal CPT0188910009 CPT0188910009.WholeExome.RP-1303.bam 19172322471 BAM aligned CPTAC3 87d7158b-185e-4c7a-a1af-bd1239b0d062 35594f976811ae9210d70e2b4e076d71 {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.WXS.A.hg38 C3N-02265 CCRCC WXS tissue_normal CPT0188910009 1b9e5fc5-ef8c-4dfb-aa74-6f0613304efc_wxs_gdc_realn.bam 26937615074 BAM harmonized CPTAC3 b849f2c8-d5ef-45eb-92ac-c12e3f128369 2ff97e54264086702042645e4fca3195 {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02265.WXS.N C3N-02265 CCRCC WXS blood_normal CPT0188940002 CPT0188940002.WholeExome.RP-1303.bam 17026339704 BAM aligned CPTAC3 82bcd8e2-a75e-4798-98b1-cbf33142fafd 0f18649504e74aa732e8373d47d08b98 {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal"} -C3N-02265.WXS.N.hg38 C3N-02265 CCRCC WXS blood_normal CPT0188940002 40f13e63-757b-43af-a946-8e2bdab7163d_wxs_gdc_realn.bam 23242266143 BAM harmonized CPTAC3 3f6a5ef3-b16b-4b35-a9c3-19788791eff8 d7a125d54a563919902d20585efe6f63 {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal"} -C3N-02265.WXS.T C3N-02265 CCRCC WXS tumor CPT0188900006 CPT0188900006.WholeExome.RP-1303.bam 26205075718 BAM aligned CPTAC3 71c2cfca-947f-4b26-babe-f6d4e0d58da8 9ea45abb12473a7485bec2cd91a1ae08 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor"} -C3N-02265.WXS.T.hg38 C3N-02265 CCRCC WXS tumor CPT0188900006 3f769f5f-911e-4331-9517-b6d0e852d377_wxs_gdc_realn.bam 36573429449 BAM harmonized CPTAC3 04a32656-19b5-4ead-b77a-3cf0f08c2d45 966f251792ab4b57a729339e9ae12f80 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.MethArray.Green.T C3N-02266 CCRCC Methylation_Array tumor CPT0188950006 203219650218_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3d7ae721-d7a6-4947-9528-9565f1bd6d30 fdb47424d5d1409adb9d8275798f574b {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.MethArray.Red.T C3N-02266 CCRCC Methylation_Array tumor CPT0188950006 203219650218_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 ca12c0d2-c3a8-4cfa-9e36-527e5cc9d3ee 51a311f180db82f022728534bee4610a {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.miRNA-Seq.S35_L005_R1.T C3N-02266 CCRCC miRNA-Seq tumor CPT0188950009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L005_R1_001.unaln.bam 228513270 BAM S35_L005_R1 unaligned CPTAC3 98422dff-172c-4b4d-b5a9-fe6f3cd455ed ff5e42a1175d6ed12533b5fca9a194df {"aliquot_tag": "ALQ_79857840", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.miRNA-Seq.T.hg38 C3N-02266 CCRCC miRNA-Seq tumor CPT0188950009 05a6e966-f900-4977-968a-a46a1fa25446_mirnaseq_gdc_realn.bam 259259934 BAM harmonized CPTAC3 557d80ee-6f16-424f-90a2-304d75709462 b97aba291835bc09a6d982d29c7e0d9c {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor"} -C3N-02266.RNA-Seq.chimeric.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.chimeric.gdc_realn.bam 41515638 BAM chimeric harmonized CPTAC3 7cff4843-a65d-4355-8bdf-17b2f16c8c1c 454abe116c216ce53443c0ad20cd2776 {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor"} -C3N-02266.RNA-Seq.genomic.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.genomic.gdc_realn.bam 9971371408 BAM genomic harmonized CPTAC3 881eb0d2-5731-4ba6-8dd1-361739b0e7eb 62253f1b9868699eeb39c37c242c0011 {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor"} -C3N-02266.RNA-Seq.S1_L007_R1.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4610916562 FASTQ S1_L007_R1 unaligned CPTAC3 29c048f0-71fb-467e-8040-b06b12f03ce5 7d0c0d5b44d0c454d45ccc82361955f8 {"aliquot_tag": "ALQ_79857840", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.RNA-Seq.S1_L007_R2.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 5111306517 FASTQ S1_L007_R2 unaligned CPTAC3 9415c7d5-4fb8-499b-b03f-e3dcd5ec25e4 88f5a6df0db04349afc55348274a2b92 {"aliquot_tag": "ALQ_79857840", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02266.RNA-Seq.transcriptome.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.transcriptome.gdc_realn.bam 12262099065 BAM transcriptome harmonized CPTAC3 f8feea90-3a71-4966-be7e-6d8412db405f a3823345fac1952cab7f0f7c27e4b6da {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor"} -C3N-02266.WGS.N C3N-02266 CCRCC WGS blood_normal CPT0188970002 CPT0188970002.WholeGenome.RP-1303.bam 114399327135 BAM aligned CPTAC3 e922214d-6045-49e1-9494-79aa1db485db d98eab735d7127225c26e180ebefe99e {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02266.WGS.N.hg38 C3N-02266 CCRCC WGS blood_normal CPT0188970002 66471fe4-e446-4c79-a8fe-283047c13b5a_wgs_gdc_realn.bam 166254112111 BAM harmonized CPTAC3 620a4374-783c-474b-9cb0-383011cdaebb aa79168889c097a233761e51337c4610 {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02266.WGS.T C3N-02266 CCRCC WGS tumor CPT0188950006 CPT0188950006.WholeGenome.RP-1303.bam 112154524414 BAM aligned CPTAC3 51ad6ea0-fd91-45d5-935e-ccff98fe1e67 4ac58a4f33f9ffc3c47c7c6329b46f2d {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.WGS.T.hg38 C3N-02266 CCRCC WGS tumor CPT0188950006 df1cc5c1-ec09-4329-b682-02cfe897e8af_wgs_gdc_realn.bam 165591132096 BAM harmonized CPTAC3 ef510c58-3e21-4220-b9ec-d3b2702d669e a3fd192478761cd8806ee6236f2e31d7 {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.WXS.N C3N-02266 CCRCC WXS blood_normal CPT0188970002 CPT0188970002.WholeExome.RP-1303.bam 29279857529 BAM aligned CPTAC3 4fe45736-dff1-45c0-b476-e4517b3badd5 1727cc8ac24a58e417b63f64b117dd1f {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02266.WXS.N.hg38 C3N-02266 CCRCC WXS blood_normal CPT0188970002 66471fe4-e446-4c79-a8fe-283047c13b5a_wxs_gdc_realn.bam 41022813328 BAM harmonized CPTAC3 504592ce-cb29-4aa8-ad82-fe315e661ff1 972d2a6089d4e48a2295a3276e8492e4 {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02266.WXS.T C3N-02266 CCRCC WXS tumor CPT0188950006 CPT0188950006.WholeExome.RP-1303.bam 20392433151 BAM aligned CPTAC3 89373a12-c0c1-48a8-81c3-c9e0ca0165ca d886952273eda1c13d91faf2696e1883 {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor"} -C3N-02266.WXS.T.hg38 C3N-02266 CCRCC WXS tumor CPT0188950006 df1cc5c1-ec09-4329-b682-02cfe897e8af_wxs_gdc_realn.bam 28342817972 BAM harmonized CPTAC3 874e7360-bb66-4e48-a7e2-1f27c92dfd9d dd989f94e93021335c780805d29bfbea {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor"} -C3N-02271.MethArray.Green.T C3N-02271 UCEC Methylation_Array tumor CPT0181670011 203561450073_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5a44cb62-b701-4772-a9c7-7e6915066ae5 cd99041eae6d48f9067947a53734760e {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor"} -C3N-02271.MethArray.Red.T C3N-02271 UCEC Methylation_Array tumor CPT0181670011 203561450073_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 2baf4c42-6876-4aac-ab8a-206980f61fe2 521e6dc2546623e8c296995c1174dd83 {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor"} -C3N-02271.miRNA-Seq.S8_L003_R1.T C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L003_R1_001.unaln.bam 198650312 BAM S8_L003_R1 unaligned CPTAC3 65f39fa3-a13c-4621-8c2c-d5875f83873c 56794a0cc9d68ee326e6ce4343e6c5e4 {"aliquot_tag": "ALQ_2191da", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02271.miRNA-Seq.T.hg38 C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 74a1a56f-2fc1-4b68-bce0-e20f7068d906_mirnaseq_gdc_realn.bam 224584540 BAM harmonized CPTAC3 13e3debd-1565-41f2-9be6-78b90ab64f79 5a01929529c9fa59711f581d919e14cf {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.chimeric.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.chimeric.gdc_realn.bam 47133024 BAM chimeric harmonized CPTAC3 95796dfa-4a32-467d-a965-1391919f626d 61236fa621111face1531a3dcf9ff6f2 {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.chimeric.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.chimeric.gdc_realn.bam 236413547 BAM chimeric harmonized CPTAC3 3bec1f19-acf3-4d74-914d-dc1240393684 fd678922b130a7826e5b0ddb36713050 {"aliquot_tag": "ALQ_e723a805", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.genomic.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.genomic.gdc_realn.bam 8662076070 BAM genomic harmonized CPTAC3 c69d467d-e44a-4f77-918a-6dd750b98a8f 254940344e9a3fd965edc3c3a313d71e {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.genomic.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.genomic.gdc_realn.bam 11711728967 BAM genomic harmonized CPTAC3 c4c02e1f-e0c0-4836-af69-1f84db456866 6ab87c016f169fc4574c2c7d42929a1f {"aliquot_tag": "ALQ_e723a805", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.S35_R1.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R1_001.fastq.gz 6584273526 FASTQ S35_R1 unaligned CPTAC3 447ba7bf-e183-4b30-896c-815f9d460e20 3ba1e02f9344a5ddaf226d28c6bb6ea9 {"aliquot_tag": "ALQ_e723a805", "sample": "S35", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.S35_R2.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R2_001.fastq.gz 6694531573 FASTQ S35_R2 unaligned CPTAC3 65e2a265-2479-4bb9-8f70-e5308edc77ae 72ec457c29c10475c35e26790906f7da {"aliquot_tag": "ALQ_e723a805", "sample": "S35", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.S4_L001_R1.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R1_001.fastq.gz 4113611353 FASTQ S4_L001_R1 unaligned CPTAC3 a94239b3-71d6-48b0-9f2d-02967507f364 5afd2dc44f31dc1b4616a9caffdd9856 {"aliquot_tag": "ALQ_2191da", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.S4_L001_R2.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R2_001.fastq.gz 4662404266 FASTQ S4_L001_R2 unaligned CPTAC3 eccadfbc-6f7d-497c-a679-c31a2abad9ea 7e1df27bf3a61a0a2fd95b69748ef581 {"aliquot_tag": "ALQ_2191da", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.transcriptome.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.transcriptome.gdc_realn.bam 10108492186 BAM transcriptome harmonized CPTAC3 1d020c52-112b-45c5-bfd1-209e0c965413 fd6605b2bb1634f2f97a0f773f802a88 {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor"} -C3N-02271.RNA-Seq.transcriptome.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.transcriptome.gdc_realn.bam 5580019898 BAM transcriptome harmonized CPTAC3 10095a05-5fad-4ff0-8ba1-f4c6beddba7c b6ac50cc7e8518c9f0e4bb2839a313d7 {"aliquot_tag": "ALQ_e723a805", "gdc_sample_type": "Primary Tumor"} -C3N-02271.WGS.N C3N-02271 UCEC WGS blood_normal CPT0181730002 CPT0181730002.WholeGenome.RP-1303.bam 78746740694 BAM aligned CPTAC3 2b1c3fc6-761d-40fe-9a92-151e7ec63630 9d3e6f800a724661845738e81535619d {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02271.WGS.N.hg38 C3N-02271 UCEC WGS blood_normal CPT0181730002 d9b7c46a-b056-40a3-b6a9-5c3018dc1d26_wgs_gdc_realn.bam 115500352900 BAM harmonized CPTAC3 f646282e-40af-441c-8e90-aede75106ba8 bd64a05e50df1a7d02605669f88c6014 {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02271.WGS.T C3N-02271 UCEC WGS tumor CPT0181670011 CPT0181670011.WholeGenome.RP-1303.bam 78699894579 BAM aligned CPTAC3 0d28d79f-e63c-40d7-b1a3-4c074e1b1253 a9cf8e24bcca6f1964d742cc04af4f1f {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor"} -C3N-02271.WGS.T.hg38 C3N-02271 UCEC WGS tumor CPT0181670011 ca2a315a-3e31-4193-a9dd-b8508de9be78_wgs_gdc_realn.bam 114472996172 BAM harmonized CPTAC3 d2df30de-6b3e-4147-bbde-a6a83b6a6461 f74bd6a0a469e07d00c7a76e8fea179b {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor"} -C3N-02271.WXS.N C3N-02271 UCEC WXS blood_normal CPT0181730002 CPT0181730002.WholeExome.RP-1303.bam 20990933045 BAM aligned CPTAC3 90962853-ddf3-4348-8cb4-41e9128ba334 479f40420431adddc04397a8bf366cec {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02271.WXS.N.hg38 C3N-02271 UCEC WXS blood_normal CPT0181730002 d9b7c46a-b056-40a3-b6a9-5c3018dc1d26_wxs_gdc_realn.bam 28548167534 BAM harmonized CPTAC3 362c4f04-bb02-4e8c-beea-7193f230be1f e9d591b4e9149c8f1761f370e14170f0 {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02271.WXS.T C3N-02271 UCEC WXS tumor CPT0181670011 CPT0181670011.WholeExome.RP-1303.bam 26481454060 BAM aligned CPTAC3 c53ff2ba-02de-41a5-ab6b-ffc6475e3a22 fe733afe5cb4978deda59d4e81ba9b59 {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor"} -C3N-02271.WXS.T.hg38 C3N-02271 UCEC WXS tumor CPT0181670011 ca2a315a-3e31-4193-a9dd-b8508de9be78_wxs_gdc_realn.bam 36464927545 BAM harmonized CPTAC3 bd27f969-0783-48cc-ac16-3094c2af2430 e95cb3a6bdf99379788805168cdba024 {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor"} -C3N-02274.MethArray.Green.T C3N-02274 UCEC Methylation_Array tumor CPT0182380007 203561620049_R04C01_Grn.idat 13676233 IDAT Green NA CPTAC3 c37f78cc-20f1-403b-a902-8f03521d172e cba9a2df46e8898f4e04ed94f1a6e170 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor"} -C3N-02274.MethArray.Red.T C3N-02274 UCEC Methylation_Array tumor CPT0182380007 203561620049_R04C01_Red.idat 13676233 IDAT Red NA CPTAC3 2f817dd3-984e-400a-b5e5-1930092c58f9 bffafea51fc1c95e6082e259cb40e061 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor"} -C3N-02274.miRNA-Seq.S15_L001_R1.T C3N-02274 UCEC miRNA-Seq tumor CPT0182380010 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGTCA_S15_L001_R1_001.unaln.bam 205883780 BAM S15_L001_R1 unaligned CPTAC3 638228c7-80f9-41cb-8c8e-e169a975d820 4eec343aa08c9f460cc6131592f48ad2 {"aliquot_tag": "ALQ_e439493c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02274.miRNA-Seq.T.hg38 C3N-02274 UCEC miRNA-Seq tumor CPT0182380010 e69f931b-8776-4320-9a85-acf1ae139ec1_mirnaseq_gdc_realn.bam 238411768 BAM harmonized CPTAC3 47ba0a10-5388-4359-9beb-ccdbb05ae927 23d05fd93cf7ecf9c3f9adcf42609286 {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.chimeric.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.chimeric.gdc_realn.bam 31761564 BAM chimeric harmonized CPTAC3 29df9e07-ab41-45d2-87b6-502c6ceed1f5 6ac0ff06d4a59fdfd083d09ae7dbe558 {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.chimeric.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.chimeric.gdc_realn.bam 140402122 BAM chimeric harmonized CPTAC3 a8ed21fb-a693-4ea1-a5b6-6e2780117932 e922ed04614bb597e1e7559e141706a6 {"aliquot_tag": "ALQ_a083d2d5", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.genomic.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.genomic.gdc_realn.bam 8363175125 BAM genomic harmonized CPTAC3 31a26787-5a55-4458-ab80-327965103b92 2b5e1e92a6bcfe4a7a9f21f58a268bbf {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.genomic.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.genomic.gdc_realn.bam 7073013886 BAM genomic harmonized CPTAC3 369b9440-5342-4481-b21a-0753743ca707 1d1ddf50c9439dfabc031082c9b3312d {"aliquot_tag": "ALQ_a083d2d5", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.S33_L005_R1.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R1_001.fastq.gz 4082146412 FASTQ S33_L005_R1 unaligned CPTAC3 5be907b3-28a4-48c7-9b52-b779badebd58 3bb81c69e58bfd8db8822074cf86c6ed {"aliquot_tag": "ALQ_e439493c", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.S33_L005_R2.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R2_001.fastq.gz 4594238747 FASTQ S33_L005_R2 unaligned CPTAC3 0ab3da5d-77b9-4e92-9f76-6de8335f806c e352ab48dc933a7486ab6f95471e0aa9 {"aliquot_tag": "ALQ_e439493c", "sample": "S33", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.S34_R1.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R1_001.fastq.gz 4669979169 FASTQ S34_R1 unaligned CPTAC3 fa2a18f8-f6e5-434a-a47d-92595f328edb 6377ca1c5d3a534c2f3dfb621a411c89 {"aliquot_tag": "ALQ_a083d2d5", "sample": "S34", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.S34_R2.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R2_001.fastq.gz 4905232569 FASTQ S34_R2 unaligned CPTAC3 3c0a9850-ad52-4df8-8449-cbddde626e78 c8562e1f6a04856a19349211bdda6709 {"aliquot_tag": "ALQ_a083d2d5", "sample": "S34", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.transcriptome.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.transcriptome.gdc_realn.bam 11820614277 BAM transcriptome harmonized CPTAC3 6a0bc772-928b-4fb9-93ee-7112e22207f3 d1496164951c73c1d9e279992271737f {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor"} -C3N-02274.RNA-Seq.transcriptome.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.transcriptome.gdc_realn.bam 3607972004 BAM transcriptome harmonized CPTAC3 80a3e5aa-8b03-4c8b-b703-5a53888975fa e07c9b7d354a71c60b8fa647e4ab0884 {"aliquot_tag": "ALQ_a083d2d5", "gdc_sample_type": "Primary Tumor"} -C3N-02274.WGS.N C3N-02274 UCEC WGS blood_normal CPT0182440002 CPT0182440002.WholeGenome.RP-1303.bam 63746783618 BAM aligned CPTAC3 216bb0b4-f3b2-46ad-b083-f859f84f99f2 de1c63c0dded340d9972b8c0fc3ad60f {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02274.WGS.N.hg38 C3N-02274 UCEC WGS blood_normal CPT0182440002 c478da9b-c518-4ec9-be48-b5114cabc73e_wgs_gdc_realn.bam 94294832961 BAM harmonized CPTAC3 fdda9b8c-ca7c-4eec-b994-14e6506abfb2 2cd6d0bfd7812e5bccbc733167f49c37 {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02274.WGS.T C3N-02274 UCEC WGS tumor CPT0182380007 CPT0182380007.WholeGenome.RP-1303.bam 68470778995 BAM aligned CPTAC3 3440cfa4-f5c1-46d6-b816-dfb911a87a3e 9715dece973b91991c183fa0889c8fe0 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor"} -C3N-02274.WGS.T.hg38 C3N-02274 UCEC WGS tumor CPT0182380007 d38314a9-18e1-44f3-b3fc-7060dbca65cc_wgs_gdc_realn.bam 97350232558 BAM harmonized CPTAC3 65e06700-120d-4479-b8ca-e31955450d69 230894b72551339b8e837d12e012bfae {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor"} -C3N-02274.WXS.N C3N-02274 UCEC WXS blood_normal CPT0182440002 CPT0182440002.WholeExome.RP-1303.bam 31016821150 BAM aligned CPTAC3 1978d384-0508-4bf9-a804-c7ed5a5a7eb0 72001abb6f27b2718e426593bb58ab4e {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02274.WXS.N.hg38 C3N-02274 UCEC WXS blood_normal CPT0182440002 c478da9b-c518-4ec9-be48-b5114cabc73e_wxs_gdc_realn.bam 42273899595 BAM harmonized CPTAC3 44147ef1-f2c0-4d6d-851c-a911a4ddab43 62d9b539bc97e433b1b30991fe9ffa82 {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02274.WXS.T C3N-02274 UCEC WXS tumor CPT0182380007 CPT0182380007.WholeExome.RP-1303.bam 22386069315 BAM aligned CPTAC3 50c82140-3307-479c-9b17-3c2c30a76f77 e55169d02050a653efdd17d25ba7c481 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor"} -C3N-02274.WXS.T.hg38 C3N-02274 UCEC WXS tumor CPT0182380007 d38314a9-18e1-44f3-b3fc-7060dbca65cc_wxs_gdc_realn.bam 31469198714 BAM harmonized CPTAC3 d322e5c0-6fca-42e1-96a6-5e0fc92df4e5 9726a419d29e6af95b9ae37fcf1f2e05 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor"} -C3N-02275.MethArray.Green.T C3N-02275 HNSCC Methylation_Array tumor CPT0163740007 203273200155_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ab806c28-9698-4ad1-8c10-4d5037955f00 a81884a1f45810b93f020f1da96f617f {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor"} -C3N-02275.MethArray.Red.T C3N-02275 HNSCC Methylation_Array tumor CPT0163740007 203273200155_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 6f861b07-afbd-4041-9239-5a155e73f917 e955fab43e89d9b3bf657e661b3fe91a {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor"} -C3N-02275.miRNA-Seq.A.hg38 C3N-02275 HNSCC miRNA-Seq tissue_normal CPT0163720006 dbd3c18c-26f3-4005-9d08-f71258254ad5_mirnaseq_gdc_realn.bam 268611532 BAM harmonized CPTAC3 8f0df4b3-29f6-440a-9e8f-8ffe30110dea ade1fb001c91b672fe3f2432c3582d3a {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02275.miRNA-Seq.S35_L002_R1.T C3N-02275 HNSCC miRNA-Seq tumor CPT0163740013 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L002_R1_001.unaln.bam 241516062 BAM S35_L002_R1 unaligned CPTAC3 41c4af52-895e-42ca-a163-d2dbdba6a30f f32caf75458e6cd17bbfb44bfd292fca {"aliquot_tag": "ALQ_90acae17", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02275.miRNA-Seq.S4_L001_R1.A C3N-02275 HNSCC miRNA-Seq tissue_normal CPT0163720006 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L001_R1_001.unaln.bam 235813637 BAM S4_L001_R1 unaligned CPTAC3 56f5b5c3-a8ff-4fea-b1bf-654cfc0df1da 376802d757a2b688387f33b410b187b4 {"aliquot_tag": "ALQ_769d9e79", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02275.miRNA-Seq.T.hg38 C3N-02275 HNSCC miRNA-Seq tumor CPT0163740013 a4f118b5-8c7a-4f83-ade6-143704c36fb7_mirnaseq_gdc_realn.bam 296804470 BAM harmonized CPTAC3 b7c21ea3-609f-4e68-95e0-3550c0f9166d b66207c7c18b135f35635793bfda0b0c {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.chimeric.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.chimeric.gdc_realn.bam 187621702 BAM chimeric harmonized CPTAC3 2384ce2c-2c28-4405-a4da-942f63c89a8f 11951fa4aaf0bd50ee4f8d5e67fa28a0 {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02275.RNA-Seq.chimeric.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.chimeric.gdc_realn.bam 147591960 BAM chimeric harmonized CPTAC3 d76a2d60-6e9b-4956-9bbb-8dfc64254479 0d00edc17b50bd1c6443586c8bec6308 {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.chimeric.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.chimeric.gdc_realn.bam 283249404 BAM chimeric harmonized CPTAC3 36a0d914-e84f-4bd7-978f-1476299811bf bc9743554e41a858c4264a3400140314 {"aliquot_tag": "ALQ_7affa0b7", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.genomic.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.genomic.gdc_realn.bam 8843741287 BAM genomic harmonized CPTAC3 8eed690d-e359-47cd-a218-2a0bf3dc2d1d af48153a5cc1f58fae3eb7d74fff88e8 {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02275.RNA-Seq.genomic.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.genomic.gdc_realn.bam 6680793373 BAM genomic harmonized CPTAC3 d7176b18-b637-4de5-b5e6-f0ca49ce6883 76dc11239d455456a37ad63b67606f36 {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.genomic.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.genomic.gdc_realn.bam 15643866834 BAM genomic harmonized CPTAC3 9446adfd-b078-4b38-92b5-6d0b712b3e54 87b3aa790c4faa44fd25f2c9fb0bfae0 {"aliquot_tag": "ALQ_7affa0b7", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.S1_L001_R1.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 2937103692 FASTQ S1_L001_R1 unaligned CPTAC3 398fb651-ba38-45ea-8785-3e8fa30cd8c4 2cbfeebb89635853ef2845ab9d76d08f {"aliquot_tag": "ALQ_90acae17", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.S1_L001_R2.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 3387393769 FASTQ S1_L001_R2 unaligned CPTAC3 bb5e47dc-06a3-43fc-85e7-d273a0c2a520 3306018f7ba2906cff79ffd5c3531027 {"aliquot_tag": "ALQ_90acae17", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.S4_L001_R1.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R1_001.fastq.gz 4009322703 FASTQ S4_L001_R1 unaligned CPTAC3 040116b3-617f-4218-8f85-acb108ac7e81 76f2c0f3563ba2f9315f56bc64d007cf {"aliquot_tag": "ALQ_769d9e79", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02275.RNA-Seq.S4_L001_R2.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R2_001.fastq.gz 4279251231 FASTQ S4_L001_R2 unaligned CPTAC3 c71afded-40ae-469f-889e-ecc642a169c6 62743f8fda7ffe00d07c9f474ba2a593 {"aliquot_tag": "ALQ_769d9e79", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02275.RNA-Seq.S77_R1.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R1_001.fastq.gz 11656395803 FASTQ S77_R1 unaligned CPTAC3 1de73f95-7b69-44d8-95b6-04acbf709a3a 9d5ca6329c9425a5f9d48b2621a274e5 {"aliquot_tag": "ALQ_7affa0b7", "sample": "S77", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.S77_R2.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R2_001.fastq.gz 12073659426 FASTQ S77_R2 unaligned CPTAC3 3a2a36b9-e3d1-432c-b5be-d199207b3aa2 2a6cb585bb5386620e6e393da63a17cf {"aliquot_tag": "ALQ_7affa0b7", "sample": "S77", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.transcriptome.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.transcriptome.gdc_realn.bam 9634510680 BAM transcriptome harmonized CPTAC3 7c4d700c-70e4-4c29-a91f-aa770a7f7b3d 4cba6d636607c36593e4ab36bca51b27 {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02275.RNA-Seq.transcriptome.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.transcriptome.gdc_realn.bam 8468579301 BAM transcriptome harmonized CPTAC3 24648398-981d-4adc-a69e-e715f28fa62c 5e597dc6653104e2bf2938609f53856f {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor"} -C3N-02275.RNA-Seq.transcriptome.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.transcriptome.gdc_realn.bam 12006150402 BAM transcriptome harmonized CPTAC3 32c2cb34-e4b0-4593-a60b-3cf9dd0467a3 efd280c62b98b2fb7ba0bebfc6dc97c3 {"aliquot_tag": "ALQ_7affa0b7", "gdc_sample_type": "Primary Tumor"} -C3N-02275.WGS.N C3N-02275 HNSCC WGS blood_normal CPT0163780002 CPT0163780002.WholeGenome.RP-1303.bam 68574069168 BAM aligned CPTAC3 08d0aeab-6217-44af-a7a4-e7e4141bc681 7cbadbfecd4246a66c10b0dffbd33b4f {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02275.WGS.N.hg38 C3N-02275 HNSCC WGS blood_normal CPT0163780002 02977102-9859-41f2-a8d4-089f6cff43cd_wgs_gdc_realn.bam 100390524184 BAM harmonized CPTAC3 c47644d9-4c56-4081-9c6a-0f6dad3a6ef5 8e9de5aa8f1a12e9384cb60fd9edcc78 {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02275.WGS.T C3N-02275 HNSCC WGS tumor CPT0163740007 CPT0163740007.WholeGenome.RP-1303.bam 80591152209 BAM aligned CPTAC3 2574f176-29ea-486d-aba0-cdaed14d8a58 5f910effda981982df5d017ecd7e76b9 {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor"} -C3N-02275.WGS.T.hg38 C3N-02275 HNSCC WGS tumor CPT0163740007 24ce24cc-3d67-49d6-af28-d453465da942_wgs_gdc_realn.bam 119030681136 BAM harmonized CPTAC3 01860a0d-9da1-43ff-a2fa-c7aeb775a538 fe23229f61682144006acb5c60aacf9d {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor"} -C3N-02275.WXS.N C3N-02275 HNSCC WXS blood_normal CPT0163780002 CPT0163780002.WholeExome.RP-1303.bam 20835810189 BAM aligned CPTAC3 b1519096-721c-44f4-a655-589a26c87e6c d354be011c2e677d9cfba6002d4c114d {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02275.WXS.N.hg38 C3N-02275 HNSCC WXS blood_normal CPT0163780002 02977102-9859-41f2-a8d4-089f6cff43cd_wxs_gdc_realn.bam 28131023584 BAM harmonized CPTAC3 4dad8cda-80c7-4acd-a416-f9e5b689ef79 8ebfe6912ffabca61607a1bd50123365 {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02275.WXS.T C3N-02275 HNSCC WXS tumor CPT0163740007 CPT0163740007.WholeExome.RP-1303.bam 25890815846 BAM aligned CPTAC3 8f6dd8dd-e0ae-4b3d-a2c0-bff3920e3705 132bd658cfd0b2227abcacdc6583ba0b {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor"} -C3N-02275.WXS.T.hg38 C3N-02275 HNSCC WXS tumor CPT0163740007 24ce24cc-3d67-49d6-af28-d453465da942_wxs_gdc_realn.bam 35964698774 BAM harmonized CPTAC3 cf8500b3-7b6b-48c8-8dc7-00f414d2976b 813afb58cbe178eeb8b6064c463867b2 {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor"} -C3N-02279.MethArray.Green.A C3N-02279 HNSCC Methylation_Array tissue_normal CPT0163800006 203281980258_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c671f58a-533e-4660-9b5a-e198e5d5b593 23189693e9ad20b05eeef80e7ab70107 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.MethArray.Green.T C3N-02279 HNSCC Methylation_Array tumor CPT0163790006 203219650096_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d073aa5d-0e38-479d-a61b-de253c52620c 9fc4e665159ff9da54664bef053833ad {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor"} -C3N-02279.MethArray.Red.A C3N-02279 HNSCC Methylation_Array tissue_normal CPT0163800006 203281980258_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 21cbc5f4-44fb-465e-8f2e-5e0e311547f0 b72bfb4a63c208a8d9e37aff3c988bd2 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.MethArray.Red.T C3N-02279 HNSCC Methylation_Array tumor CPT0163790006 203219650096_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 c28802e4-ecd9-4860-ac84-3433ca5a6e11 0075c59be1ace2bd861aa5b568307635 {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor"} -C3N-02279.miRNA-Seq.A.hg38 C3N-02279 HNSCC miRNA-Seq tissue_normal CPT0163800009 dadd3a0e-420b-4928-901f-c43d35ba0bac_mirnaseq_gdc_realn.bam 202958753 BAM harmonized CPTAC3 efccc198-3353-4420-b037-7039cbe4e422 4702c725032650c7c05a6032208364af {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.miRNA-Seq.S17_L001_R1.A C3N-02279 HNSCC miRNA-Seq tissue_normal CPT0163800009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L001_R1_001.unaln.bam 185497050 BAM S17_L001_R1 unaligned CPTAC3 4c34f560-3374-488f-b32d-d02dd743abb9 9972d8e5fd515f91251c354dbf0ff680 {"aliquot_tag": "ALQ_6db4625d", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.miRNA-Seq.S32_L002_R1.T C3N-02279 HNSCC miRNA-Seq tumor CPT0163790009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L002_R1_001.unaln.bam 219363353 BAM S32_L002_R1 unaligned CPTAC3 56c5d70d-15b5-4bec-98bb-f0754c8dcb19 17d591371cb98bf63c743b4da3a0de16 {"aliquot_tag": "ALQ_91f2b2f9", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02279.miRNA-Seq.T.hg38 C3N-02279 HNSCC miRNA-Seq tumor CPT0163790009 eb0169ff-a7ad-4604-b4e3-014e2f189350_mirnaseq_gdc_realn.bam 251717006 BAM harmonized CPTAC3 aca6ac17-10e4-4ae4-89f1-197492cb37b4 0fa06f2ea83013560df776885b4871cb {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.chimeric.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.chimeric.gdc_realn.bam 166077066 BAM chimeric harmonized CPTAC3 7e6815e9-8d9f-4a85-b21f-e6fb99dce8c3 66fd041a4ea873a4da254fe46c214543 {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.RNA-Seq.chimeric.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.chimeric.gdc_realn.bam 284209077 BAM chimeric harmonized CPTAC3 aa5cb9a9-1345-4468-bde3-76d52c5fc783 394a860f8825e16c93798f1b6f52ae83 {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.chimeric.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.chimeric.gdc_realn.bam 85432863 BAM chimeric harmonized CPTAC3 1dcfcace-e898-4f9b-8dbc-6ea0d7fc9450 ec3f6f494872bcebf545901fa6b9fe0a {"aliquot_tag": "ALQ_dcd42f97", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.genomic.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.genomic.gdc_realn.bam 9455613937 BAM genomic harmonized CPTAC3 ef8ca72c-7c27-4b9f-bae2-a0ba9eeeedc9 920e9b3c2e171247f027fa413f56d114 {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.RNA-Seq.genomic.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.genomic.gdc_realn.bam 7794138345 BAM genomic harmonized CPTAC3 8abda2b9-172a-4d0a-9117-85be0742dd92 a2b5e9445097494c85b4593e451a97e1 {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.genomic.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.genomic.gdc_realn.bam 6679630882 BAM genomic harmonized CPTAC3 61a54a0d-43e7-4081-936a-ff241c275a12 9231f2d847e4c2b8cc7be3c176a23c53 {"aliquot_tag": "ALQ_dcd42f97", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.S12_L003_R1.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R1_001.fastq.gz 4308676850 FASTQ S12_L003_R1 unaligned CPTAC3 23d0ebbf-e11d-4f60-9feb-4309f33e138d 2893521f5a95151726b34199d4d75ef3 {"aliquot_tag": "ALQ_6db4625d", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.RNA-Seq.S12_L003_R2.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R2_001.fastq.gz 4922645370 FASTQ S12_L003_R2 unaligned CPTAC3 19859e6c-d4e5-48ed-9b1a-ca851ca52ae4 7ee3f02535279eea93fd9343b819836e {"aliquot_tag": "ALQ_6db4625d", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.RNA-Seq.S72_R1.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R1_001.fastq.gz 4679599672 FASTQ S72_R1 unaligned CPTAC3 8b6f4685-3e00-465f-9bb7-eb7c8486cbdc 49f4058424948d4b7d92fcf122342a6c {"aliquot_tag": "ALQ_dcd42f97", "sample": "S72", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.S72_R2.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R2_001.fastq.gz 4861223681 FASTQ S72_R2 unaligned CPTAC3 97da9260-a2d7-4733-8992-31d59e7fcdcb 786cc51d4671f1be3bc460cf2c046f58 {"aliquot_tag": "ALQ_dcd42f97", "sample": "S72", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.S7_L008_R1.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3777560170 FASTQ S7_L008_R1 unaligned CPTAC3 5790c14a-7d2c-4d4c-b317-582fdb290e19 d3d2582937b3ca05ad1507e6bc7085ee {"aliquot_tag": "ALQ_91f2b2f9", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.S7_L008_R2.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 4170241292 FASTQ S7_L008_R2 unaligned CPTAC3 61c16e4d-4598-41ad-ace3-a4ef8ecaeaa3 8b527f86a1565a732df619d4712c0e58 {"aliquot_tag": "ALQ_91f2b2f9", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.transcriptome.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.transcriptome.gdc_realn.bam 13256796003 BAM transcriptome harmonized CPTAC3 a9f96d1c-ebcf-445e-8f2d-a7cef965c1d3 0989096a1c457f965e3c332e3b0f9116 {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.RNA-Seq.transcriptome.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.transcriptome.gdc_realn.bam 11357438264 BAM transcriptome harmonized CPTAC3 f5268749-77c5-4144-817b-073a77c87c68 53d96c013461e7aae2386f35d7f75a9d {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor"} -C3N-02279.RNA-Seq.transcriptome.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.transcriptome.gdc_realn.bam 6152849827 BAM transcriptome harmonized CPTAC3 40e928d5-d8a5-45a5-81d9-31f403506b30 263f54d55d201f0a4e76db3d21e7c013 {"aliquot_tag": "ALQ_dcd42f97", "gdc_sample_type": "Primary Tumor"} -C3N-02279.WGS.N C3N-02279 HNSCC WGS blood_normal CPT0163830002 CPT0163830002.WholeGenome.RP-1303.bam 58442437684 BAM aligned CPTAC3 50dc9c68-a86e-40c9-bf89-331f2276cb15 1cec86e23ba3fdf11eed458fb839406c {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal"} -C3N-02279.WGS.N.hg38 C3N-02279 HNSCC WGS blood_normal CPT0163830002 99137d4f-1ecb-4abd-a812-4774f6cf0077_wgs_gdc_realn.bam 85364042656 BAM harmonized CPTAC3 adcc2a18-410c-4048-8135-197da04d8795 4b41418bfbc8d0b54da02dd123763ead {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal"} -C3N-02279.WGS.T C3N-02279 HNSCC WGS tumor CPT0163790006 CPT0163790006.WholeGenome.RP-1303.bam 68012707910 BAM aligned CPTAC3 15b0e2bd-fe7b-4c39-ba0c-6681668eaa29 ca239a4a6d799cb98422a66ca09e2b1d {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor"} -C3N-02279.WGS.T.hg38 C3N-02279 HNSCC WGS tumor CPT0163790006 6b857303-8eda-414f-9ad5-7f6a8ba109c9_wgs_gdc_realn.bam 100544071805 BAM harmonized CPTAC3 ad9fc28b-fc3b-456f-8ed9-b0477d7f8413 20c4c130b72288a5fdfa531f89a9b649 {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor"} -C3N-02279.WXS.A C3N-02279 HNSCC WXS tissue_normal CPT0163800006 CPT0163800006.WholeExome.RP-1303.bam 20979882890 BAM aligned CPTAC3 ac03b624-3bf6-493b-9a61-975d6a90b4b5 bc6aad26c7c58dccf79625caad9e47b2 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.WXS.A.hg38 C3N-02279 HNSCC WXS tissue_normal CPT0163800006 4c454769-e24a-4f43-b9a3-61b66a026a24_wxs_gdc_realn.bam 28839835368 BAM harmonized CPTAC3 88e5012b-7cc2-4b34-b594-3453a8fdc300 5fa6ace7d72c00d1e14cd321122c0611 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02279.WXS.N C3N-02279 HNSCC WXS blood_normal CPT0163830002 CPT0163830002.WholeExome.RP-1303.bam 29667058556 BAM aligned CPTAC3 0f0480e0-5484-40b5-aaf9-e8e5603933a2 e37da286973ef36d6323825ae84c92a7 {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal"} -C3N-02279.WXS.N.hg38 C3N-02279 HNSCC WXS blood_normal CPT0163830002 99137d4f-1ecb-4abd-a812-4774f6cf0077_wxs_gdc_realn.bam 40323949343 BAM harmonized CPTAC3 e3eb5bf7-cdc8-4e9b-8a32-2a2b900f81e0 4cf50e8506851ed288e8facc953d482c {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal"} -C3N-02279.WXS.T C3N-02279 HNSCC WXS tumor CPT0163790006 CPT0163790006.WholeExome.RP-1303.bam 25920412790 BAM aligned CPTAC3 37da2856-46d6-47f2-9dd8-f07025979864 ebb91ca7b0a6e28b23d9647bedf109fb {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor"} -C3N-02279.WXS.T.hg38 C3N-02279 HNSCC WXS tumor CPT0163790006 6b857303-8eda-414f-9ad5-7f6a8ba109c9_wxs_gdc_realn.bam 35982935845 BAM harmonized CPTAC3 5dca8da1-8dcc-4316-a7cf-21b54b3dbcfa 9f3df6daeb971e55c8b823c2b6bbceea {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor"} -C3N-02281.MethArray.Green.A C3N-02281 LUAD Methylation_Array tissue_normal CPT0125430006 203220070082_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d186bd5d-0c27-4818-a96f-60484d317078 b7dec1dbd55e5dc3cf43f3532604902f {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.MethArray.Green.T C3N-02281 LUAD Methylation_Array tumor CPT0125410007 203219650042_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 25970af8-ebd0-402f-b19a-f55a6adbb9a3 f3e344f797a060f8bda4f3764615dafd {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor"} -C3N-02281.MethArray.Red.A C3N-02281 LUAD Methylation_Array tissue_normal CPT0125430006 203220070082_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6f234dfb-f129-4b46-861e-e86fc3047b58 ec2e730bef786511401f6bdad5e4d496 {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.MethArray.Red.T C3N-02281 LUAD Methylation_Array tumor CPT0125410007 203219650042_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 09cda54b-550c-442c-85ae-b9593eb8e633 452cab46d4a0e5c57d8ad25da1490bc3 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor"} -C3N-02281.miRNA-Seq.A.hg38 C3N-02281 LUAD miRNA-Seq tissue_normal CPT0125430009 880c7fa4-4d21-4ddd-944a-93ba863a3e8d_mirnaseq_gdc_realn.bam 247936755 BAM harmonized CPTAC3 56bd5702-9510-4389-87bb-ac725a4480d0 9e1baba8975d8ce85dc3ef85ae6cf94c {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.miRNA-Seq.S13_L004_R1.T C3N-02281 LUAD miRNA-Seq tumor CPT0125410010 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTCAA_S13_L004_R1_001.unaln.bam 190110257 BAM S13_L004_R1 unaligned CPTAC3 009eaeab-e392-4c73-9604-c866d63de0f9 a6c92737e780a14fd9ed959796e4c10c {"aliquot_tag": "ALQ_a04b39b3", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02281.miRNA-Seq.S3_L004_R1.A C3N-02281 LUAD miRNA-Seq tissue_normal CPT0125430009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L004_R1_001.unaln.bam 224429851 BAM S3_L004_R1 unaligned CPTAC3 feae3f5d-83e0-422b-805f-fb30a516b17a 8328178004de9ed12047a1eee6d97df0 {"aliquot_tag": "ALQ_ba4ce336", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.miRNA-Seq.T.hg38 C3N-02281 LUAD miRNA-Seq tumor CPT0125410010 4949602d-2dc0-404c-9e3e-8c6da447394a_mirnaseq_gdc_realn.bam 205117376 BAM harmonized CPTAC3 fe2e75df-a976-41a8-a080-e81b8086fe98 a6864a098e0403305f3f0ef4d55502c2 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor"} -C3N-02281.RNA-Seq.chimeric.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.chimeric.gdc_realn.bam 33203760 BAM chimeric harmonized CPTAC3 37b88442-6ff0-412f-b63e-a2fff248653f ae22382d5d4eed7bbfdb1aa49745f82f {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.RNA-Seq.chimeric.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.chimeric.gdc_realn.bam 45036502 BAM chimeric harmonized CPTAC3 8d490c16-44de-4add-8174-4424d7f62a84 35cbdced3ff64031472c461a9a69b564 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor"} -C3N-02281.RNA-Seq.genomic.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.genomic.gdc_realn.bam 9888368408 BAM genomic harmonized CPTAC3 cc784c10-1105-4417-b562-7bc35bdea15d a2bf3417c144b7749b184dc53ce02189 {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.RNA-Seq.genomic.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.genomic.gdc_realn.bam 8203962418 BAM genomic harmonized CPTAC3 3a84bf68-5f2c-4e13-b6d1-bfa4d0d547e6 8f2ea98ada4882680e4ac609a1454877 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor"} -C3N-02281.RNA-Seq.S2_L007_R1.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4032956462 FASTQ S2_L007_R1 unaligned CPTAC3 f685ad18-72c1-485a-88b1-b9e30fc85df8 4e5cbba8e57463b37f145eda515dd8ae {"aliquot_tag": "ALQ_ba4ce336", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.RNA-Seq.S2_L007_R2.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R2_001.fastq.gz 3969347389 FASTQ S2_L007_R2 unaligned CPTAC3 a9293f07-a5f3-4d53-895d-c4a3ed9f51f1 4fd1fc34f2e3578f316ecadc609f0359 {"aliquot_tag": "ALQ_ba4ce336", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.RNA-Seq.S9_L004_R1.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R1_001.fastq.gz 3430704335 FASTQ S9_L004_R1 unaligned CPTAC3 1da3b0ea-41c6-45f1-baa1-32ff4b3b1296 f66e4fef03cbad90eb45836380b75b32 {"aliquot_tag": "ALQ_a04b39b3", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02281.RNA-Seq.S9_L004_R2.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R2_001.fastq.gz 3682548491 FASTQ S9_L004_R2 unaligned CPTAC3 9fc7e956-14f9-4adf-80d7-3696cc4b3ee4 d35bcfd6a8a9aeabe3494e8ffe239e83 {"aliquot_tag": "ALQ_a04b39b3", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02281.RNA-Seq.transcriptome.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.transcriptome.gdc_realn.bam 9954847995 BAM transcriptome harmonized CPTAC3 12e981c9-3bee-4d29-8583-f157fd7c57cb 9d1793eab241ba24d102aa39eac2a195 {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.RNA-Seq.transcriptome.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.transcriptome.gdc_realn.bam 9199442095 BAM transcriptome harmonized CPTAC3 7abf7d28-b236-4d5e-8090-bb93ee173fe6 5f4e4899242b9b8e951a86f9a0c36226 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor"} -C3N-02281.WGS.N C3N-02281 LUAD WGS blood_normal CPT0126370002 CPT0126370002.WholeGenome.RP-1303.bam 127725562907 BAM aligned CPTAC3 01b29078-1007-4d5c-8325-722222cb2654 170e258c98d6ecc93dcbac7d12458226 {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02281.WGS.N.hg38 C3N-02281 LUAD WGS blood_normal CPT0126370002 eee93c9f-9262-4282-8d2a-0578765798f1_wgs_gdc_realn.bam 183811379400 BAM harmonized CPTAC3 7f737b76-e356-4e8d-8e69-6cc4cdf24de6 46bde155dff03c8ba7bd056b15e12cc1 {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02281.WGS.T C3N-02281 LUAD WGS tumor CPT0125410007 CPT0125410007.WholeGenome.RP-1303.bam 52336193366 BAM aligned CPTAC3 9729575f-8df3-4af0-9850-e90357b48560 e7110f4e7dc6e215db9c82381f2118c6 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor"} -C3N-02281.WGS.T.hg38 C3N-02281 LUAD WGS tumor CPT0125410007 e3bad720-d2a3-4514-b00a-6cfab2c5671c_wgs_gdc_realn.bam 77147732149 BAM harmonized CPTAC3 8f692508-a0f6-4275-831e-c32c175a45c9 47d3a12b0994c051d46e853b160161f7 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor"} -C3N-02281.WXS.A C3N-02281 LUAD WXS tissue_normal CPT0125430006 CPT0125430006.WholeExome.RP-1303.bam 22955184779 BAM aligned CPTAC3 66a6de7d-94d0-415c-94c5-96b12b11f14f e4cb5df1915116ace7a284eb7002c743 {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.WXS.A.hg38 C3N-02281 LUAD WXS tissue_normal CPT0125430006 9136e9eb-ef1a-422f-a73c-61e21270b0e8_wxs_gdc_realn.bam 32398817672 BAM harmonized CPTAC3 db2c9d8a-ac5a-4abb-b313-6277daf95aa1 508284809c67a375fafbb15a922a69e1 {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02281.WXS.N C3N-02281 LUAD WXS blood_normal CPT0126370002 CPT0126370002.WholeExome.RP-1303.bam 24024845909 BAM aligned CPTAC3 df391c4c-b200-4f5c-8b4b-7a3a1add7ee0 4eb953802f35329d55f0a1a2a888e2ca {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02281.WXS.N.hg38 C3N-02281 LUAD WXS blood_normal CPT0126370002 eee93c9f-9262-4282-8d2a-0578765798f1_wxs_gdc_realn.bam 32925229422 BAM harmonized CPTAC3 8f5e0dfc-b9e8-4c58-bbdf-3b3cd7e9f122 e9c41076564af15cbfa721a81794bbe2 {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02281.WXS.T C3N-02281 LUAD WXS tumor CPT0125410007 CPT0125410007.WholeExome.RP-1303.bam 20486961036 BAM aligned CPTAC3 5d6d3a56-21da-4e7c-b922-d992f25ef468 91d779cd3c88b72f77660c325e80a237 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor"} -C3N-02281.WXS.T.hg38 C3N-02281 LUAD WXS tumor CPT0125410007 e3bad720-d2a3-4514-b00a-6cfab2c5671c_wxs_gdc_realn.bam 28639624310 BAM harmonized CPTAC3 32e6910d-e07c-46c8-a8fb-d19fec7b18b3 44ebf64342f63b8bacc35144f0124ce3 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor"} -C3N-02282.MethArray.Green.A C3N-02282 LUAD Methylation_Array tissue_normal CPT0125370006 203219760074_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9f4c6463-4da7-4273-80e9-dd01f75d25a7 6bc3c75da2e8279fb32644aaf4a7a06d {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.MethArray.Green.T C3N-02282 LUAD Methylation_Array tumor CPT0125360006 203219650003_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d19fd641-cd9b-4639-ab67-fa9a87cfdf1c ce2e6c1a79048cd4243137b29b852da8 {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor"} -C3N-02282.MethArray.Red.A C3N-02282 LUAD Methylation_Array tissue_normal CPT0125370006 203219760074_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 88cf399e-c819-49d4-abd4-e0ea8cf7c1d2 fb013fdb1429b47389a400c0005bd140 {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.MethArray.Red.T C3N-02282 LUAD Methylation_Array tumor CPT0125360006 203219650003_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 d5993dac-0916-40cd-a58a-a12748ecec1f 23bc28217086a3a1d43a88f0fd5cb32c {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor"} -C3N-02282.miRNA-Seq.A.hg38 C3N-02282 LUAD miRNA-Seq tissue_normal CPT0125370009 5f067cb0-9f61-42a8-96bd-7ccdbe22ab6e_mirnaseq_gdc_realn.bam 206476495 BAM harmonized CPTAC3 15912179-7eca-4f63-9156-d22726841c58 d4b6ab0e0063865a88248b356cdfdb63 {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.miRNA-Seq.S12_L004_R1.T C3N-02282 LUAD miRNA-Seq tumor CPT0125360009 190108_UNC31-K00269_0176_AHYGLVBBXX_CTTGTA_S12_L004_R1_001.unaln.bam 254204558 BAM S12_L004_R1 unaligned CPTAC3 ee60f0c2-ad5d-4fdb-b937-540e6b8afc99 9e74e5f9ea0a254f82a839a20930ca12 {"aliquot_tag": "ALQ_6fa95cfe", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02282.miRNA-Seq.S2_L004_R1.A C3N-02282 LUAD miRNA-Seq tissue_normal CPT0125370009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L004_R1_001.unaln.bam 185333941 BAM S2_L004_R1 unaligned CPTAC3 75711f61-033e-4830-a325-44cfdc68131a 1a4bc5ac5f99264101178690bb9e6086 {"aliquot_tag": "ALQ_52c9754e", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.miRNA-Seq.T.hg38 C3N-02282 LUAD miRNA-Seq tumor CPT0125360009 12a9846f-011b-426a-8826-c49850b9d70a_mirnaseq_gdc_realn.bam 294604144 BAM harmonized CPTAC3 24ce12c4-8277-46dc-a9cd-028bc8ff3f27 72d5dd6a63f2b13e4ed666e6a1b0e701 {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor"} -C3N-02282.RNA-Seq.chimeric.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.chimeric.gdc_realn.bam 33898275 BAM chimeric harmonized CPTAC3 8dd9ed4b-4e90-407b-80e1-92e0dbc7fe76 6155fdedb18f875412dc4d31559a7d7f {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.RNA-Seq.chimeric.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.chimeric.gdc_realn.bam 57123237 BAM chimeric harmonized CPTAC3 2028a45b-ee7c-4d7d-a21c-c4dc282dd6a9 9cf5ee016ff99a78781137237979ce3d {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor"} -C3N-02282.RNA-Seq.genomic.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.genomic.gdc_realn.bam 9096918554 BAM genomic harmonized CPTAC3 14c3de9d-31e0-4fe4-9603-bcc328262951 e2c3f19f108601a7fe4b8a0feb9370ee {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.RNA-Seq.genomic.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.genomic.gdc_realn.bam 11016665539 BAM genomic harmonized CPTAC3 2284bf8e-21aa-4aaf-8381-e34f4d6ea064 10bb8b1bb6f5d05570973fb76c366ea8 {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor"} -C3N-02282.RNA-Seq.S3_L007_R1.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4085745493 FASTQ S3_L007_R1 unaligned CPTAC3 16b48db8-7cbb-4af2-94b5-b658404c20e0 27a710cd00cb4049216b327bfbba4439 {"aliquot_tag": "ALQ_52c9754e", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.RNA-Seq.S3_L007_R2.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R2_001.fastq.gz 3741001751 FASTQ S3_L007_R2 unaligned CPTAC3 2cef00bf-87fb-4cc3-9f67-7693145b0e01 51f82b6372d74d5fffe5f0f3f6e5f978 {"aliquot_tag": "ALQ_52c9754e", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.RNA-Seq.S4_L001_R1.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4404537471 FASTQ S4_L001_R1 unaligned CPTAC3 6338da8c-f507-48c2-bba4-2af1ac296264 f18aceac96e479584315bf3586aa7639 {"aliquot_tag": "ALQ_6fa95cfe", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02282.RNA-Seq.S4_L001_R2.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4930252213 FASTQ S4_L001_R2 unaligned CPTAC3 7caa8479-13a6-4636-bc5d-93fec5dfcde2 c520abec2035b8e1b50e25ea924486fb {"aliquot_tag": "ALQ_6fa95cfe", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02282.RNA-Seq.transcriptome.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.transcriptome.gdc_realn.bam 9240302691 BAM transcriptome harmonized CPTAC3 d46f08ce-3408-4524-946d-51b76419ab4a aa26af1418b367b7602d94dd0ce3f2e6 {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.RNA-Seq.transcriptome.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.transcriptome.gdc_realn.bam 10932743546 BAM transcriptome harmonized CPTAC3 68c728bc-ee85-4217-80b9-fcf52f072950 da3308af60ae7839019f8d4c50fc824f {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor"} -C3N-02282.WGS.N C3N-02282 LUAD WGS blood_normal CPT0125400002 CPT0125400002.WholeGenome.RP-1303.bam 81921335333 BAM aligned CPTAC3 269f1c9d-6156-4912-b4b2-51891c8ce87c 27a577b49036f9fbf9ca4fc76ba13668 {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02282.WGS.N.hg38 C3N-02282 LUAD WGS blood_normal CPT0125400002 8b5a5693-cd27-4083-9581-3c748292040a_wgs_gdc_realn.bam 118618949521 BAM harmonized CPTAC3 e2b57e57-7458-491d-89d1-5e89648ff462 4eb8e0ef3162e1ba8291018ecbeafc0b {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02282.WGS.T C3N-02282 LUAD WGS tumor CPT0125360006 CPT0125360006.WholeGenome.RP-1303.bam 106521647206 BAM aligned CPTAC3 f917a8a7-04ba-4dbe-af1b-d28201398a7b f4e5dd0d580b511205e66751fef613fb {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor"} -C3N-02282.WGS.T.hg38 C3N-02282 LUAD WGS tumor CPT0125360006 a7ea82bc-eefc-4de3-9673-b023fd390c78_wgs_gdc_realn.bam 153937059160 BAM harmonized CPTAC3 33dfbcc7-8112-4fab-bd91-e5580f636e84 544d64dfc38b318fc7b4b0b9d593ce15 {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor"} -C3N-02282.WXS.A C3N-02282 LUAD WXS tissue_normal CPT0125370006 CPT0125370006.WholeExome.RP-1303.bam 28199812366 BAM aligned CPTAC3 d8eed0bf-afeb-44c6-8b03-bc79ce5e86aa ea10f64f301fff618c6d9c31a99054c8 {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.WXS.A.hg38 C3N-02282 LUAD WXS tissue_normal CPT0125370006 e5633f90-1c9a-42ef-bacc-7e43629d51ba_wxs_gdc_realn.bam 39402377534 BAM harmonized CPTAC3 44a7b7c5-4665-4b51-bd37-ca5066733027 f51df13f000a52bb489b8db43b69322a {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02282.WXS.N C3N-02282 LUAD WXS blood_normal CPT0125400002 CPT0125400002.WholeExome.RP-1303.bam 25740370922 BAM aligned CPTAC3 9ab73ba1-868b-472e-bdf2-361a6750f3b0 701b00e88e70c0987171264a749248e7 {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02282.WXS.N.hg38 C3N-02282 LUAD WXS blood_normal CPT0125400002 8b5a5693-cd27-4083-9581-3c748292040a_wxs_gdc_realn.bam 35160284684 BAM harmonized CPTAC3 91f15acd-1f52-47f3-8a16-3864586136fe a1a45769d2ccaf867c429517b7408e4d {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02282.WXS.T C3N-02282 LUAD WXS tumor CPT0125360006 CPT0125360006.WholeExome.RP-1303.bam 24865379080 BAM aligned CPTAC3 9b09258e-1267-458c-be58-7c8c440fef39 7975c411f1c2ae4cfa3a4d8baf0fc7ee {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor"} -C3N-02282.WXS.T.hg38 C3N-02282 LUAD WXS tumor CPT0125360006 a7ea82bc-eefc-4de3-9673-b023fd390c78_wxs_gdc_realn.bam 34061861003 BAM harmonized CPTAC3 7fb26ec0-b1e4-4b21-8aae-83df9d82de46 83c1f921edb3f1155460062bd1c03991 {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor"} -C3N-02283.MethArray.Green.T C3N-02283 LSCC Methylation_Array tumor CPT0126530006 203219650218_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2f588a92-c90d-4ee0-8316-544532ec0842 004a314aeab41c8d27df1b67cc045c24 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor"} -C3N-02283.MethArray.Red.T C3N-02283 LSCC Methylation_Array tumor CPT0126530006 203219650218_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 89d12eff-842b-458c-97f6-d84fe9861eae c5003cf853b1c86c7c47f2a81298f090 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor"} -C3N-02283.miRNA-Seq.S23_L001_R1.T C3N-02283 LSCC miRNA-Seq tumor CPT0126530009 181219_UNC31-K00269_0173_BHYGJJBBXX_GGTAGC_S23_L001_R1_001.unaln.bam 217640981 BAM S23_L001_R1 unaligned CPTAC3 fd55fc86-0fe6-4f65-8670-be376dd092b4 47abf1279c53835dc070d8ee9c78d1a5 {"aliquot_tag": "ALQ_40f82a0e", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02283.miRNA-Seq.T.hg38 C3N-02283 LSCC miRNA-Seq tumor CPT0126530009 633d890f-672b-4360-85ce-9dcdf33d0da8_mirnaseq_gdc_realn.bam 242378206 BAM harmonized CPTAC3 b3f546a5-5ba4-4a35-a2b5-50884016aab7 497454329f2e7f133cfbe22c82e0010c {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor"} -C3N-02283.RNA-Seq.chimeric.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.chimeric.gdc_realn.bam 31831563 BAM chimeric harmonized CPTAC3 c39ee19b-52fc-45a5-a49a-c2cc0597b9fb d4ef16b5afc369952be817e2682759bc {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor"} -C3N-02283.RNA-Seq.genomic.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.genomic.gdc_realn.bam 9332805898 BAM genomic harmonized CPTAC3 9c544cbc-4157-45f2-8511-5b6c15b5baed 1a69311934575fe91948c348031cc231 {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor"} -C3N-02283.RNA-Seq.S7_L002_R1.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4460676897 FASTQ S7_L002_R1 unaligned CPTAC3 ebb3c067-6c73-4e96-a828-c824166f7e19 5507d4301c2cebaf87168111ce7018d9 {"aliquot_tag": "ALQ_40f82a0e", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02283.RNA-Seq.S7_L002_R2.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4753976657 FASTQ S7_L002_R2 unaligned CPTAC3 188620f0-3a3d-4484-b78d-b275cd775360 51b15353721216095ee0f4b1aad5e5f5 {"aliquot_tag": "ALQ_40f82a0e", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02283.RNA-Seq.transcriptome.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.transcriptome.gdc_realn.bam 12699192149 BAM transcriptome harmonized CPTAC3 d819103e-797a-47f2-88c8-a64b01fb6f24 244792fceaea88d30b5b1157e19c94e7 {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor"} -C3N-02283.WGS.N C3N-02283 LSCC WGS blood_normal CPT0126580002 CPT0126580002.WholeGenome.RP-1303.bam 56423682667 BAM aligned CPTAC3 2414d0b0-e2dc-4426-849b-3376f23d2b23 7c269cd4abf789b2ce4f45141719db8c {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal"} -C3N-02283.WGS.N.hg38 C3N-02283 LSCC WGS blood_normal CPT0126580002 19aa271d-2103-4fad-a065-5301809f651f_wgs_gdc_realn.bam 82170772698 BAM harmonized CPTAC3 02d030b5-5b7a-41c9-ba6e-12c6db1eb429 2672bf91fbf6935e5386855fc2c45e48 {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal"} -C3N-02283.WGS.T C3N-02283 LSCC WGS tumor CPT0126530006 CPT0126530006.WholeGenome.RP-1303.bam 57210718062 BAM aligned CPTAC3 3ddd7339-c862-43f8-b700-3e99a006f1dd 498876660e25b668d7f33ada37e13617 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor"} -C3N-02283.WGS.T.hg38 C3N-02283 LSCC WGS tumor CPT0126530006 4f64e5de-5d18-4635-857d-0c3bbe4ded3e_wgs_gdc_realn.bam 82183960488 BAM harmonized CPTAC3 ac38d38d-ddd0-4fb5-86da-41e05dfa1062 6354f19e097e19df610ed4d3c3a845aa {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor"} -C3N-02283.WXS.N C3N-02283 LSCC WXS blood_normal CPT0126580002 CPT0126580002.WholeExome.RP-1303.bam 24382824015 BAM aligned CPTAC3 13da72f7-f0d6-4307-843a-966f6972ddf6 9d5327a88b9e94775b79777a96d811ce {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal"} -C3N-02283.WXS.N.hg38 C3N-02283 LSCC WXS blood_normal CPT0126580002 19aa271d-2103-4fad-a065-5301809f651f_wxs_gdc_realn.bam 33603537279 BAM harmonized CPTAC3 af167ea3-342a-4fcd-8a84-580c91dd33f0 c20498f7a52b2a2db4edb728bff42810 {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal"} -C3N-02283.WXS.T C3N-02283 LSCC WXS tumor CPT0126530006 CPT0126530006.WholeExome.RP-1303.bam 28073393157 BAM aligned CPTAC3 7ff555cf-88cd-44f7-b169-877797c36b5c 5068a84810ef705164bc2ff3a2472a83 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor"} -C3N-02283.WXS.T.hg38 C3N-02283 LSCC WXS tumor CPT0126530006 4f64e5de-5d18-4635-857d-0c3bbe4ded3e_wxs_gdc_realn.bam 37544949507 BAM harmonized CPTAC3 a225aefc-324c-43f5-884e-9725d8ca58e0 f4a1529c10fcc38f48b47f770c1a0961 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor"} -C3N-02284.MethArray.Green.T C3N-02284 LSCC Methylation_Array tumor CPT0126670006 203219640172_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d3a15167-76a1-4697-8bdf-f12435f8c57f e8f3614b4803e1322960f6df11224e13 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor"} -C3N-02284.MethArray.Red.T C3N-02284 LSCC Methylation_Array tumor CPT0126670006 203219640172_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 4b9b3eaa-efef-4749-bbdd-24a201f6a409 a7f934130d31f5c0878e8415a66230af {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor"} -C3N-02284.miRNA-Seq.S18_L001_R1.T C3N-02284 LSCC miRNA-Seq tumor CPT0126670009 181219_UNC31-K00269_0173_BHYGJJBBXX_GTCCGC_S18_L001_R1_001.unaln.bam 210642649 BAM S18_L001_R1 unaligned CPTAC3 749cbdfc-9c73-41a2-848e-1bc157f077ce e3f6cf400849e9607942626fe60960e8 {"aliquot_tag": "ALQ_33ecfe60", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02284.miRNA-Seq.T.hg38 C3N-02284 LSCC miRNA-Seq tumor CPT0126670009 1662a921-df29-47ca-afb6-3140f34d05c8_mirnaseq_gdc_realn.bam 229472610 BAM harmonized CPTAC3 d66c6990-fa00-42b2-b29b-c866291d034c 7c5043bc8231399c7bcf0c97aeab7d48 {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor"} -C3N-02284.RNA-Seq.chimeric.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.chimeric.gdc_realn.bam 22308776 BAM chimeric harmonized CPTAC3 b629f164-5444-48e3-9357-a68d83bc5c1c a99ad0fc0a72f355ba555058f195292b {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor"} -C3N-02284.RNA-Seq.genomic.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.genomic.gdc_realn.bam 5193125932 BAM genomic harmonized CPTAC3 586accd8-e5bc-4746-9f6e-b9b668685f8b d24884c0a13f547d3306c761a021bc6c {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor"} -C3N-02284.RNA-Seq.S2_L001_R1.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 2488873957 FASTQ S2_L001_R1 unaligned CPTAC3 81ffa1ef-11cc-46aa-885f-221adaf31d29 ce382177f72b28439b41fe2b19750771 {"aliquot_tag": "ALQ_33ecfe60", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02284.RNA-Seq.S2_L001_R2.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 2647028789 FASTQ S2_L001_R2 unaligned CPTAC3 79b7cc72-625d-4585-872f-acd84a75a90d 6826e8ea5daa4c7b5188f9f99b6084f9 {"aliquot_tag": "ALQ_33ecfe60", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02284.RNA-Seq.transcriptome.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.transcriptome.gdc_realn.bam 6884290622 BAM transcriptome harmonized CPTAC3 e44117f2-2e4b-48f1-ab76-2095e9e1948a fa1261079f1cc8d288df422b56bf1e14 {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor"} -C3N-02284.WGS.N C3N-02284 LSCC WGS blood_normal CPT0126730002 CPT0126730002.WholeGenome.RP-1303.bam 68299075959 BAM aligned CPTAC3 739342b8-92bd-4f17-9227-197c6d5a1744 4b6564a19a3c1e42f27f37c2f36431b9 {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02284.WGS.N.hg38 C3N-02284 LSCC WGS blood_normal CPT0126730002 c791c2be-5334-4d7b-9ab0-91a698b7efb9_wgs_gdc_realn.bam 100197693005 BAM harmonized CPTAC3 34c364ee-f9e4-4e0e-8e9a-52de011021b4 3ec1d2fcae05f9fe011e8b447fa6acef {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02284.WGS.T C3N-02284 LSCC WGS tumor CPT0126670006 CPT0126670006.WholeGenome.RP-1303.bam 60213321314 BAM aligned CPTAC3 90623410-b0ca-4d69-a2ae-1fa188441cc2 7815d1eec282ed82ed1c6e4567b3ca13 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor"} -C3N-02284.WGS.T.hg38 C3N-02284 LSCC WGS tumor CPT0126670006 240bbd6e-5410-4449-a9c1-85d5148ce48d_wgs_gdc_realn.bam 88874339542 BAM harmonized CPTAC3 639eef3a-cbe7-4eb1-9647-f444fe63dd66 8081dcf6335cc03f74888825fbb8e56e {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor"} -C3N-02284.WXS.N C3N-02284 LSCC WXS blood_normal CPT0126730002 CPT0126730002.WholeExome.RP-1303.bam 23085356299 BAM aligned CPTAC3 8e66ec07-03fe-4ae8-bd41-85fc3ad0827e 3593bbb93791b5eb2a084114f7875e94 {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02284.WXS.N.hg38 C3N-02284 LSCC WXS blood_normal CPT0126730002 c791c2be-5334-4d7b-9ab0-91a698b7efb9_wxs_gdc_realn.bam 32164636479 BAM harmonized CPTAC3 595c07fb-051b-4c2a-855b-3ae60dcf59fc a758dc73e45db0388e34d57b8403779f {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal"} -C3N-02284.WXS.T C3N-02284 LSCC WXS tumor CPT0126670006 CPT0126670006.WholeExome.RP-1303.bam 27103835008 BAM aligned CPTAC3 9a17bbf1-b964-47f3-8a0f-bae44212f4ea f25694b39287eacde2ed77d4d488eba6 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor"} -C3N-02284.WXS.T.hg38 C3N-02284 LSCC WXS tumor CPT0126670006 240bbd6e-5410-4449-a9c1-85d5148ce48d_wxs_gdc_realn.bam 37619328887 BAM harmonized CPTAC3 1294fb93-7b37-499b-b572-70b1a6cfcf3e 2078b2388c63a8d33a6625b9740d2e88 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor"} -C3N-02285.MethArray.Green.A C3N-02285 LSCC Methylation_Array tissue_normal CPT0126760006 203219760074_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 36d9f1e6-7842-48ba-9c6f-077f889c6497 819298fbbe732e932485420c423a9598 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.MethArray.Green.T C3N-02285 LSCC Methylation_Array tumor CPT0126740006 203219640095_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2cf546a0-3b03-4a62-9a90-6fc0a0305093 df0c1695f01dca42d74027d5c27d3245 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor"} -C3N-02285.MethArray.Red.A C3N-02285 LSCC Methylation_Array tissue_normal CPT0126760006 203219760074_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 9270783a-6c6f-4ef7-9b39-01b1ddf1e504 76cd0875cf1693254326d3c97779039c {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.MethArray.Red.T C3N-02285 LSCC Methylation_Array tumor CPT0126740006 203219640095_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 d68bcadb-030d-4fac-a5f4-42d14b552d59 cb3389e9631a7a4f7e098cd88e014529 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor"} -C3N-02285.miRNA-Seq.A.hg38 C3N-02285 LSCC miRNA-Seq tissue_normal CPT0126760009 0c783189-a677-4f8b-873f-7520635747e0_mirnaseq_gdc_realn.bam 226555259 BAM harmonized CPTAC3 04af56a7-1155-490f-9eb0-1f0f1fcb8908 2b8fbc1848d7c3372e081ba597fcbc80 {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.miRNA-Seq.S13_L001_R1.T C3N-02285 LSCC miRNA-Seq tumor CPT0126740009 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTCAA_S13_L001_R1_001.unaln.bam 286618480 BAM S13_L001_R1 unaligned CPTAC3 ad1a133b-d777-4b39-bbeb-03d295ae9fa9 5ac62993bc4e7c4dbedf3e3bf68b948a {"aliquot_tag": "ALQ_bf105715", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02285.miRNA-Seq.S42_L002_R1.A C3N-02285 LSCC miRNA-Seq tissue_normal CPT0126760009 181219_UNC31-K00269_0173_BHYGJJBBXX_TACAGC_S42_L002_R1_001.unaln.bam 204185738 BAM S42_L002_R1 unaligned CPTAC3 af5b5e44-7421-48e4-81b1-e57a7a2d9ab9 1598dc34260c571399fea9ea4e7d2e87 {"aliquot_tag": "ALQ_c5d00475", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.miRNA-Seq.T.hg38 C3N-02285 LSCC miRNA-Seq tumor CPT0126740009 7dfa1d2f-6172-41ed-bca7-4ecaf97dc785_mirnaseq_gdc_realn.bam 311490689 BAM harmonized CPTAC3 e7bcc159-56f2-476f-a961-58d4a39c1d9e 2df571eea6addb40d311e0db30fdee1f {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor"} -C3N-02285.RNA-Seq.chimeric.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.chimeric.gdc_realn.bam 30892936 BAM chimeric harmonized CPTAC3 7aec2d32-8091-4092-baa6-7ae472808c54 01cbfd51ace14debd69bafa971fd9fdb {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.RNA-Seq.chimeric.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.chimeric.gdc_realn.bam 24907459 BAM chimeric harmonized CPTAC3 02e44361-7c11-4d54-9295-a1c51a4cf541 872d5d7b81007d382763d6d2c1349d0f {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor"} -C3N-02285.RNA-Seq.genomic.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.genomic.gdc_realn.bam 9715431444 BAM genomic harmonized CPTAC3 4903af37-1c1e-419b-bc9b-c27c2da0e8c3 47a85ade5c82cc9a4b6bd8c69dd37032 {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.RNA-Seq.genomic.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.genomic.gdc_realn.bam 7947460672 BAM genomic harmonized CPTAC3 f3a3a0b0-9af0-48fb-9b1e-5b4b18351764 fbdd7c0f467799611e8ab7a7f61cbad9 {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor"} -C3N-02285.RNA-Seq.S1_L007_R1.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4430878992 FASTQ S1_L007_R1 unaligned CPTAC3 2042bad1-37ed-41c7-892e-5a49fb97a23a 93d176b6c43274618fb6d5d2e25132d9 {"aliquot_tag": "ALQ_c5d00475", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.RNA-Seq.S1_L007_R2.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4534947376 FASTQ S1_L007_R2 unaligned CPTAC3 20060cbc-b291-43b9-b1a2-179d33db94df 77811c65ac976ba51f625f409d7287be {"aliquot_tag": "ALQ_c5d00475", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.RNA-Seq.S29_L008_R1.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R1_001.fastq.gz 3403190252 FASTQ S29_L008_R1 unaligned CPTAC3 7a27f21d-0359-4af1-9224-c31b612241b4 4ea0b78523be563070758b630aa28e5c {"aliquot_tag": "ALQ_bf105715", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02285.RNA-Seq.S29_L008_R2.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R2_001.fastq.gz 3623342067 FASTQ S29_L008_R2 unaligned CPTAC3 5915e9f4-006f-4912-b6e2-681270b493df 753389079f6550a33edfad7a4da0210a {"aliquot_tag": "ALQ_bf105715", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02285.RNA-Seq.transcriptome.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.transcriptome.gdc_realn.bam 12030406071 BAM transcriptome harmonized CPTAC3 6ae96d76-d173-4d93-b082-e347d139f6b8 331335fa9c6005205c3ab02ab0ba4011 {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.RNA-Seq.transcriptome.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.transcriptome.gdc_realn.bam 9064346983 BAM transcriptome harmonized CPTAC3 eb3cf5ce-55f6-43e0-b9e6-e3cacc9059d2 b6effc42607139bccd53e57902e31f73 {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor"} -C3N-02285.WGS.A C3N-02285 LSCC WGS tissue_normal CPT0126760006 CPT0126760006.WholeGenome.RP-1303.bam 65918909815 BAM aligned CPTAC3 864d3bd9-3a89-44e5-a4b1-dac412323a21 b022018fbd46f308be57d939eb0657c9 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.WGS.A.hg38 C3N-02285 LSCC WGS tissue_normal CPT0126760006 2c412e3e-65bf-4971-b17b-ea46b886860b_wgs_gdc_realn.bam 95219483406 BAM harmonized CPTAC3 c30e6f0d-25d3-45ee-94e7-ab833150ce65 677a22a1ae19f11da80a6b097a47e72c {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.WGS.N C3N-02285 LSCC WGS blood_normal CPT0126800002 CPT0126800002.WholeGenome.RP-1303.bam 54736267633 BAM aligned CPTAC3 5bea4278-dbce-4c5b-b2c1-1a361b407a2c 1f0203dacbf5a6621bdf4442bf35977e {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02285.WGS.N.hg38 C3N-02285 LSCC WGS blood_normal CPT0126800002 69286d3c-b11d-4671-84fb-50219bfa4a7d_wgs_gdc_realn.bam 78819208763 BAM harmonized CPTAC3 317eb8b8-1298-4c4e-89c9-5bf24a885bc0 9fa50b03d041d339ce005d17f5bceab9 {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02285.WGS.T C3N-02285 LSCC WGS tumor CPT0126740006 CPT0126740006.WholeGenome.RP-1303.bam 64099499788 BAM aligned CPTAC3 e7f6e3c0-6dce-43c7-ac6c-e182ee78229b 116a415a9f52a59c0a6693b8764bd606 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor"} -C3N-02285.WGS.T.hg38 C3N-02285 LSCC WGS tumor CPT0126740006 bc40d70a-933b-4fab-8523-a5abcc82c6b3_wgs_gdc_realn.bam 93975848284 BAM harmonized CPTAC3 8ac1c2de-9499-4719-b141-a4982f55371f 087820c8a9eb8f625f2c6c9e1f90fd69 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor"} -C3N-02285.WXS.A C3N-02285 LSCC WXS tissue_normal CPT0126760006 CPT0126760006.WholeExome.RP-1303.bam 26440400863 BAM aligned CPTAC3 e3ec480d-37ee-4ab3-a53a-7b22a29eae66 79db8458244a5adb8e3b30eb4f87bf33 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.WXS.A.hg38 C3N-02285 LSCC WXS tissue_normal CPT0126760006 2c412e3e-65bf-4971-b17b-ea46b886860b_wxs_gdc_realn.bam 36947024423 BAM harmonized CPTAC3 14f4df57-0eb5-4ed2-95bf-a9dd29838331 11fc7abe8e9542e601bed4d13e1ce229 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02285.WXS.N C3N-02285 LSCC WXS blood_normal CPT0126800002 CPT0126800002.WholeExome.RP-1303.bam 27913977498 BAM aligned CPTAC3 b38b6ff1-b501-47eb-aca6-2ae93b2d57db d65210c9f750949c5087b7b3d5afe521 {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02285.WXS.N.hg38 C3N-02285 LSCC WXS blood_normal CPT0126800002 69286d3c-b11d-4671-84fb-50219bfa4a7d_wxs_gdc_realn.bam 38522042296 BAM harmonized CPTAC3 c2f3061e-edf4-488b-83fb-72037b2259b5 12b66d3d335b3b6f39ee8ae61f914266 {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02285.WXS.T C3N-02285 LSCC WXS tumor CPT0126740006 CPT0126740006.WholeExome.RP-1303.bam 21499700101 BAM aligned CPTAC3 1527ba71-2f72-4cfd-9fc6-3142a6a72fe4 972b1af6c38e8e3a0b0b4b7240051e7d {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor"} -C3N-02285.WXS.T.hg38 C3N-02285 LSCC WXS tumor CPT0126740006 bc40d70a-933b-4fab-8523-a5abcc82c6b3_wxs_gdc_realn.bam 29527626071 BAM harmonized CPTAC3 7556f828-482b-42ca-a7ec-9d2a58b36567 98a12b8898f4d20f3630566f3d372b2a {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor"} -C3N-02286.MethArray.Green.T C3N-02286 GBM Methylation_Array tumor CPT0244760006 204367490066_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9448d075-581c-4431-930a-0babf71cb6b9 44c3c81ff45a6c4494d103e377888858 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor"} -C3N-02286.MethArray.Red.T C3N-02286 GBM Methylation_Array tumor CPT0244760006 204367490066_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 8fd80be3-698a-4666-ae92-d05ef75f53e3 0d34990fc116078631487b743076d295 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor"} -C3N-02286.miRNA-Seq.S39_L008_R1.T C3N-02286 GBM miRNA-Seq tumor CPT0244760012 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTATAC_S39_L008_R1_001.unaln.bam 194637823 BAM S39_L008_R1 unaligned CPTAC3 ae5b5cc2-88f4-4583-966d-adb6dea6c265 325c6af91a3cebd3a17591305f10d080 {"aliquot_tag": "ALQ_2364c8d7", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02286.miRNA-Seq.T.hg38 C3N-02286 GBM miRNA-Seq tumor CPT0244760012 89e53779-3952-48e8-96f5-c8cf72c56aef_mirnaseq_gdc_realn.bam 215338304 BAM harmonized CPTAC3 159b1364-2268-4c9e-81b2-82fcd8cd2b33 93cbddfcba5c9007fd381dec7ed2c240 {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor"} -C3N-02286.RNA-Seq.chimeric.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.chimeric.gdc_realn.bam 29702691 BAM chimeric harmonized CPTAC3 68190671-6a04-4391-a854-f810353e7ae7 37d6753015dd9be9af25c774b41d01ed {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor"} -C3N-02286.RNA-Seq.genomic.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.genomic.gdc_realn.bam 7540862865 BAM genomic harmonized CPTAC3 b33378e7-69ac-44fa-bacc-98773c52aabf 828b5c10961bf09e944c8aa71ef7c3bb {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor"} -C3N-02286.RNA-Seq.S66_L008_R1.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ S66_L008_R1 unaligned CPTAC3 02665bb1-0f40-4959-9017-1d20d7a15ced f7102e43015cf6a94651d4512fef2730 {"aliquot_tag": "ALQ_2364c8d7", "sample": "S66", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02286.RNA-Seq.S66_L008_R2.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ S66_L008_R2 unaligned CPTAC3 80bdd1ba-fe88-4d31-b371-bd54b3859722 25ea3c33b8850b377fba3165b009e7bd {"aliquot_tag": "ALQ_2364c8d7", "sample": "S66", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02286.RNA-Seq.transcriptome.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.transcriptome.gdc_realn.bam 9388570427 BAM transcriptome harmonized CPTAC3 fd190401-c359-4f1e-a6af-fc01b27c63cc c4cf1b147675125b6de4e47280253b99 {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor"} -C3N-02286.WGS.N C3N-02286 GBM WGS blood_normal CPT0244820002 CPT0244820002.WholeGenome.RP-2158.bam 25059198039 BAM aligned CPTAC3 207b0c66-831f-4fc7-9714-7b9dbc6d286c c51cbf0a58951b20781e066b7f7120f4 {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02286.WGS.N.hg38 C3N-02286 GBM WGS blood_normal CPT0244820002 ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wgs_gdc_realn.bam 77117048003 BAM harmonized CPTAC3 049469de-687c-4e38-bddb-a16aabc783b1 f2731f07a3012f2cd71dda55bcaa1e69 {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02286.WGS.T C3N-02286 GBM WGS tumor CPT0244760006 CPT0244760006.WholeGenome.RP-2158.bam 27211004051 BAM aligned CPTAC3 5d4e1b94-0bc1-483b-8d13-f163e3aa239c 6e9f41309d1adfc35c4c07d9a3aee9f0 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor"} -C3N-02286.WGS.T.hg38 C3N-02286 GBM WGS tumor CPT0244760006 4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wgs_gdc_realn.bam 80364977264 BAM harmonized CPTAC3 513c7439-2b46-4105-ae68-efcee2cdddaf 1ce8ee7be637603ee5a2d23917caf575 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor"} -C3N-02286.WXS.N C3N-02286 GBM WXS blood_normal CPT0244820002 CPT0244820002.WholeExome.RP-1303.bam 24861070255 BAM aligned CPTAC3 fb4d5bbb-2ccc-4536-8810-5b8c26966cc4 0246bff93c17589ea8c8666f3eab8af6 {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02286.WXS.N.hg38 C3N-02286 GBM WXS blood_normal CPT0244820002 ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wxs_gdc_realn.bam 33503551009 BAM harmonized CPTAC3 c4f55a53-fd44-45ee-906c-dc8706ec87b2 939e6b3ba06605284c419588bcaada6f {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02286.WXS.T C3N-02286 GBM WXS tumor CPT0244760006 CPT0244760006.WholeExome.RP-1303.bam 22922615721 BAM aligned CPTAC3 eda81041-c710-4a34-820b-0ac80720e269 c29266412aaa7d5ae57db800e304ea49 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor"} -C3N-02286.WXS.T.hg38 C3N-02286 GBM WXS tumor CPT0244760006 4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wxs_gdc_realn.bam 31977769095 BAM harmonized CPTAC3 1ef99148-c0f0-49c4-a112-d11db3c629f6 a892d971b5caa5a83c6e13ddee0fa4b1 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor"} -C3N-02288.MethArray.Green.A C3N-02288 LSCC Methylation_Array tissue_normal CPT0186140009 203219720203_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2a8a3e31-31b6-4e2e-8056-a1df8856353a 1a3d60ea4f31422ab180049a056a0895 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.MethArray.Green.T C3N-02288 LSCC Methylation_Array tumor CPT0186130006 203219650221_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 9c93e9c3-1b0a-452b-bab7-4625307d62f5 69c3cf7ebd828a1e9d2c0898eb2cfa7c {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor"} -C3N-02288.MethArray.Red.A C3N-02288 LSCC Methylation_Array tissue_normal CPT0186140009 203219720203_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 74846311-5323-4e0a-afd6-e3b01a1e0a6f 9ad6c3fad32e054d22e828c448987bbf {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.MethArray.Red.T C3N-02288 LSCC Methylation_Array tumor CPT0186130006 203219650221_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 3d2ac0f2-bc97-4c1f-92d3-6748589a02ea 5ba67f466061c8390fae63d1da3dca0d {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor"} -C3N-02288.miRNA-Seq.A.hg38 C3N-02288 LSCC miRNA-Seq tissue_normal CPT0186140006 6d96a6b0-0d4d-4bcd-a48b-7070ce0b4e77_mirnaseq_gdc_realn.bam 242295509 BAM harmonized CPTAC3 bb4645df-9751-43c3-9969-95571f4eec61 dad031e100fcdd39dfbcb2c7361c0430 {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.miRNA-Seq.S10_L003_R1.T C3N-02288 LSCC miRNA-Seq tumor CPT0186130009 181219_UNC31-K00269_0173_BHYGJJBBXX_TAGCTT_S10_L003_R1_001.unaln.bam 255309304 BAM S10_L003_R1 unaligned CPTAC3 dc29d675-c5b8-41dc-89b1-cda14bdf10b6 5c9fbe17c2cab9eaca6672f4726dffb5 {"aliquot_tag": "ALQ_4aa974d0", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02288.miRNA-Seq.S41_L004_R1.A C3N-02288 LSCC miRNA-Seq tissue_normal CPT0186140006 181219_UNC31-K00269_0173_BHYGJJBBXX_TAATCG_S41_L004_R1_001.unaln.bam 213053571 BAM S41_L004_R1 unaligned CPTAC3 65cb2405-b68b-4342-9c6d-b488f8ea4f27 d12b22c6961ed5945c9c64351042d760 {"aliquot_tag": "ALQ_6836b551", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.miRNA-Seq.T.hg38 C3N-02288 LSCC miRNA-Seq tumor CPT0186130009 0e6cf7d4-670b-4a8b-a394-eab87460fb1e_mirnaseq_gdc_realn.bam 285139256 BAM harmonized CPTAC3 efa7533d-a060-4811-aea9-98de1a2d65b5 0ccdaed971b9f81e27ac4513af579fd5 {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor"} -C3N-02288.RNA-Seq.chimeric.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.chimeric.gdc_realn.bam 171861783 BAM chimeric harmonized CPTAC3 9919a659-5f8f-4989-8a52-fdb0ab486d46 cd026fda6a9515ad8e5748cb6482f4af {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.RNA-Seq.chimeric.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.chimeric.gdc_realn.bam 194002847 BAM chimeric harmonized CPTAC3 d9fc2e49-0229-4ba4-9bdb-727efc5e2748 1429126908b2cb5a7995ad42c88656a8 {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor"} -C3N-02288.RNA-Seq.genomic.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.genomic.gdc_realn.bam 7793449514 BAM genomic harmonized CPTAC3 0840a2ea-971d-4f0c-862b-635dba0dc411 dd55ca2a7537301913261e76d9df0550 {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.RNA-Seq.genomic.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.genomic.gdc_realn.bam 8988142053 BAM genomic harmonized CPTAC3 4f095c02-6af2-4c31-aba9-346f6f7951d3 a463f78dc476d8b37106faf160c67cdb {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor"} -C3N-02288.RNA-Seq.S11_L003_R1.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4108950066 FASTQ S11_L003_R1 unaligned CPTAC3 39642b1f-d674-4058-b22d-5448545cbd46 b00c3056566ca04f211815dcf75c1efb {"aliquot_tag": "ALQ_4aa974d0", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02288.RNA-Seq.S11_L003_R2.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4354401745 FASTQ S11_L003_R2 unaligned CPTAC3 86afbf0b-e1b7-486d-b31b-429499453873 2711881c05a79ba40f8ed2454feef2b6 {"aliquot_tag": "ALQ_4aa974d0", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02288.RNA-Seq.S22_L007_R1.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R1_001.fastq.gz 3836916330 FASTQ S22_L007_R1 unaligned CPTAC3 6cbd08c2-d1b5-4b79-bbdd-123cd1403623 34fe8e405ac19137568836f9b3d5b723 {"aliquot_tag": "ALQ_6836b551", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.RNA-Seq.S22_L007_R2.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R2_001.fastq.gz 3804114781 FASTQ S22_L007_R2 unaligned CPTAC3 832340aa-ac2d-4625-aeb4-46ef85ee706f 00cd0a5674461a319d8b745fb4d7b987 {"aliquot_tag": "ALQ_6836b551", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.RNA-Seq.transcriptome.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.transcriptome.gdc_realn.bam 10874547104 BAM transcriptome harmonized CPTAC3 0fb2cd9b-d2af-47ff-8ce5-41887d748bd1 256e97b8861dc2c16c95de649ab404c8 {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.RNA-Seq.transcriptome.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.transcriptome.gdc_realn.bam 10252716605 BAM transcriptome harmonized CPTAC3 71f384f7-540f-4926-a36d-acd2f6ae8c64 c8b55d981c96bccaa573d6822ab7edcc {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor"} -C3N-02288.WGS.A C3N-02288 LSCC WGS tissue_normal CPT0186140009 CPT0186140009.WholeGenome.RP-1303.bam 65549342706 BAM aligned CPTAC3 a9d473b6-b610-4a1e-94d8-e14d5cd1c13f b73c198599e6ca032dbc1efa3baea71a {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.WGS.A.hg38 C3N-02288 LSCC WGS tissue_normal CPT0186140009 77dcf4fd-f121-474e-a7bf-f6b8d238e0f3_wgs_gdc_realn.bam 94654764151 BAM harmonized CPTAC3 484c7d93-f8f4-40a2-93dd-850690b74dea 5911edd054d80cbcf323c0bd73916694 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.WGS.N C3N-02288 LSCC WGS blood_normal CPT0186170002 CPT0186170002.WholeGenome.RP-1303.bam 60846224942 BAM aligned CPTAC3 c5617e53-b7ae-4d8e-8f50-9a59c21aea81 b7226bafb628939ea5c4db13d1ed0edc {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal"} -C3N-02288.WGS.N.hg38 C3N-02288 LSCC WGS blood_normal CPT0186170002 c7123429-3c8d-423a-9a61-67c733b83348_wgs_gdc_realn.bam 87640373571 BAM harmonized CPTAC3 f257631d-13a7-4807-b1d6-663ef1a49a24 0b5b7d21b982c55d86d4e150e60110e9 {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal"} -C3N-02288.WGS.T C3N-02288 LSCC WGS tumor CPT0186130006 CPT0186130006.WholeGenome.RP-1303.bam 71483683638 BAM aligned CPTAC3 84509c4b-f6ab-4758-a6bb-d67f7d791681 5004f1bd475cb607e631194888aa9cd6 {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor"} -C3N-02288.WGS.T.hg38 C3N-02288 LSCC WGS tumor CPT0186130006 7f25c67f-5bde-4d63-908b-8eb7a373a396_wgs_gdc_realn.bam 103111141547 BAM harmonized CPTAC3 904e2495-cb20-4d9a-98de-e9d0a82ac17d d017721413cba092c2e45e0cc8d0beb8 {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor"} -C3N-02288.WXS.A C3N-02288 LSCC WXS tissue_normal CPT0186140009 CPT0186140009.WholeExome.RP-1303.bam 30235272713 BAM aligned CPTAC3 b7400d0f-eed1-40b5-b5d6-bd858d344901 25c1b6d64d93b3f61384dca4b282dc71 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.WXS.A.hg38 C3N-02288 LSCC WXS tissue_normal CPT0186140009 77dcf4fd-f121-474e-a7bf-f6b8d238e0f3_wxs_gdc_realn.bam 42003392336 BAM harmonized CPTAC3 5bd715da-4b2d-4899-b6c6-2343ac0c2b98 1e753fbb3fff24171e604a21d0b73352 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02288.WXS.N C3N-02288 LSCC WXS blood_normal CPT0186170002 CPT0186170002.WholeExome.RP-1303.bam 22577348315 BAM aligned CPTAC3 8815ee08-f3b0-4506-8fba-b0b3f154a534 9cb1133b19adf2535443aa5e5923e30a {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal"} -C3N-02288.WXS.N.hg38 C3N-02288 LSCC WXS blood_normal CPT0186170002 c7123429-3c8d-423a-9a61-67c733b83348_wxs_gdc_realn.bam 31185327883 BAM harmonized CPTAC3 4c312282-97da-44e1-8846-29ce79da0f50 afccf420b88aa390cfc4644748bf814c {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal"} -C3N-02288.WXS.T C3N-02288 LSCC WXS tumor CPT0186130006 CPT0186130006.WholeExome.RP-1303.bam 27639974245 BAM aligned CPTAC3 ad7d4a68-fce9-4078-aa7c-ff1a4151d90b c94577c27e290dbebacf4bc448574ad4 {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor"} -C3N-02288.WXS.T.hg38 C3N-02288 LSCC WXS tumor CPT0186130006 7f25c67f-5bde-4d63-908b-8eb7a373a396_wxs_gdc_realn.bam 38383363311 BAM harmonized CPTAC3 9dbdc003-0c3d-496a-80e7-294fc3d5accd 8e6cb07334b11d47b66c2fdbdcdfda5e {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor"} -C3N-02289.MethArray.Green.A C3N-02289 LSCC Methylation_Array tissue_normal CPT0186210009 203219650098_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 13842716-d8ba-4e86-86f7-bc2f89219507 4cf41462a5251fc04175297e3501c811 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.MethArray.Green.T C3N-02289 LSCC Methylation_Array tumor CPT0186180006 203219650164_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 eb8a9df6-6b76-4da0-9d48-d27e58192f41 1be81ee5b0b8b9f42f871cdadb7b16ce {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor"} -C3N-02289.MethArray.Red.A C3N-02289 LSCC Methylation_Array tissue_normal CPT0186210009 203219650098_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 6b33d24c-e3d5-4524-bdbc-387f725c26b5 3c3097a571e00dce6759f13c171637e6 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.MethArray.Red.T C3N-02289 LSCC Methylation_Array tumor CPT0186180006 203219650164_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 d80c16bd-b187-476e-b803-43b3df8a48df 026b90df4eeaeaa9d51fcd2d29532bc5 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor"} -C3N-02289.miRNA-Seq.A.hg38 C3N-02289 LSCC miRNA-Seq tissue_normal CPT0186210006 54f8307b-d960-4e66-a985-ced5d5b1a509_mirnaseq_gdc_realn.bam 261551113 BAM harmonized CPTAC3 971f863c-6fd0-4daa-b7b4-df50015faf0f a375ff1cdd4c0b8109893c609bce3b9d {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.miRNA-Seq.S11_L003_R1.T C3N-02289 LSCC miRNA-Seq tumor CPT0186180009 181219_UNC31-K00269_0173_BHYGJJBBXX_GGCTAC_S11_L003_R1_001.unaln.bam 260277747 BAM S11_L003_R1 unaligned CPTAC3 ffc7d7a1-793c-4731-84fc-d92ba51d1981 7745d43be02e0c75aec710e056a7d020 {"aliquot_tag": "ALQ_3d7945c1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02289.miRNA-Seq.S42_L004_R1.A C3N-02289 LSCC miRNA-Seq tissue_normal CPT0186210006 181219_UNC31-K00269_0173_BHYGJJBBXX_TACAGC_S42_L004_R1_001.unaln.bam 236409589 BAM S42_L004_R1 unaligned CPTAC3 5d0b8624-44c8-4611-bfd7-444809c71bfb ded326a25fee59c9a17936687a77dd46 {"aliquot_tag": "ALQ_2642488f", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.miRNA-Seq.T.hg38 C3N-02289 LSCC miRNA-Seq tumor CPT0186180009 7c15a804-aa0d-4248-92b1-5d48439a3f13_mirnaseq_gdc_realn.bam 284074002 BAM harmonized CPTAC3 41c2b411-800c-4c70-856d-bd17abd6cf53 318f7467497ef92007b7420db86877c3 {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor"} -C3N-02289.RNA-Seq.chimeric.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.chimeric.gdc_realn.bam 153690925 BAM chimeric harmonized CPTAC3 f1bc418d-c9e8-4178-8126-2417f5d752b5 46741f63b9f5299de025e84073b4b6b5 {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.RNA-Seq.chimeric.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.chimeric.gdc_realn.bam 134169252 BAM chimeric harmonized CPTAC3 2d290c00-fed2-4930-8545-2fba2f3d6040 94ec1f7cbf0fc2e0cfab66b55a1c963b {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor"} -C3N-02289.RNA-Seq.genomic.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.genomic.gdc_realn.bam 10411293073 BAM genomic harmonized CPTAC3 15d7f68f-5227-4cd4-b19f-4ef6dda9c640 7a03af8e49b0a37f8d70807765abd957 {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.RNA-Seq.genomic.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.genomic.gdc_realn.bam 8242419388 BAM genomic harmonized CPTAC3 df8f520a-ceda-43cb-aa92-076bc9aac573 2f0c4f4b4f0894b35cb4fcfde260484f {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor"} -C3N-02289.RNA-Seq.S21_L007_R1.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R1_001.fastq.gz 4566801454 FASTQ S21_L007_R1 unaligned CPTAC3 b569607b-6b14-4fdf-922f-54ffd96052d8 d1180359a760e31fa2fb73f60c9a4b7a {"aliquot_tag": "ALQ_2642488f", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.RNA-Seq.S21_L007_R2.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R2_001.fastq.gz 4647899124 FASTQ S21_L007_R2 unaligned CPTAC3 5365e6d1-d92c-4836-9fe8-6bafc8e4783a 53ca5bb70719203944f89e93694227e5 {"aliquot_tag": "ALQ_2642488f", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.RNA-Seq.S9_L003_R1.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 3595918954 FASTQ S9_L003_R1 unaligned CPTAC3 571b4286-222c-4875-811a-e8279e5795c9 4e2402b2ba932f6900bd96befa277789 {"aliquot_tag": "ALQ_3d7945c1", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02289.RNA-Seq.S9_L003_R2.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 3936810574 FASTQ S9_L003_R2 unaligned CPTAC3 61105949-6c4a-45ca-ab05-87f6e4f36f7f e7af0e6869fc0d2f3f01977de850fdd2 {"aliquot_tag": "ALQ_3d7945c1", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02289.RNA-Seq.transcriptome.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.transcriptome.gdc_realn.bam 13612297468 BAM transcriptome harmonized CPTAC3 d77c709b-f84a-4d0f-8f1b-7a84cd2be74e 86a3859bdb96f9529709b7d29e97bbe6 {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.RNA-Seq.transcriptome.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.transcriptome.gdc_realn.bam 10734979923 BAM transcriptome harmonized CPTAC3 e6067bed-9d79-490f-80cb-df6261e2c764 1a868ac9c8e73adbf33799488de3963b {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor"} -C3N-02289.WGS.A C3N-02289 LSCC WGS tissue_normal CPT0186210009 CPT0186210009.WholeGenome.RP-1303.bam 61184896525 BAM aligned CPTAC3 fa905caa-3731-4985-aeb5-5ffe5c52b6ca 4db84d811f513ed36be929f5d434a28d {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.WGS.A.hg38 C3N-02289 LSCC WGS tissue_normal CPT0186210009 483a4ac7-2f2a-4352-b5e8-1943c694a982_wgs_gdc_realn.bam 89308880551 BAM harmonized CPTAC3 7e83903d-f9cc-41dc-a765-e75102ab90d2 164be83f3297a615283ef16b71a942fa {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.WGS.N C3N-02289 LSCC WGS blood_normal CPT0186960002 CPT0186960002.WholeGenome.RP-1303.bam 55599605777 BAM aligned CPTAC3 e9cfa218-1a25-4abe-b554-9d6f99c1c238 704dd893a9797ea1927c55ca2005afff {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal"} -C3N-02289.WGS.N.hg38 C3N-02289 LSCC WGS blood_normal CPT0186960002 d174d5b0-e1a6-4c90-9d07-707541183a9b_wgs_gdc_realn.bam 80974065111 BAM harmonized CPTAC3 277cecf8-934f-4317-b124-1c1eea975962 875f5c678e357d47cd4ed6cdee442632 {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal"} -C3N-02289.WGS.T C3N-02289 LSCC WGS tumor CPT0186180006 CPT0186180006.WholeGenome.RP-1303.bam 79479181286 BAM aligned CPTAC3 9af6971f-1b84-4534-8b64-7937259e4e08 b0409a987b5f2229e08c2adf6bcbcb39 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor"} -C3N-02289.WGS.T.hg38 C3N-02289 LSCC WGS tumor CPT0186180006 45f472fc-d103-4071-935b-35f943d1b608_wgs_gdc_realn.bam 115695591446 BAM harmonized CPTAC3 d26fbee3-5d8e-4119-988d-c11b53aa5e02 c00a21919d3fc36f7d98935e13beece9 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor"} -C3N-02289.WXS.A C3N-02289 LSCC WXS tissue_normal CPT0186210009 CPT0186210009.WholeExome.RP-1303.bam 20282515895 BAM aligned CPTAC3 3a7aec47-762f-402c-81e1-9a02774ce297 9bbd3563ae66f722ea4a45fc1d30bf64 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.WXS.A.hg38 C3N-02289 LSCC WXS tissue_normal CPT0186210009 483a4ac7-2f2a-4352-b5e8-1943c694a982_wxs_gdc_realn.bam 28282548065 BAM harmonized CPTAC3 23e57ede-a5fe-4858-bcbe-5372eca192ba 92f38270a0852d7ba68b3efa9cd38447 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02289.WXS.N C3N-02289 LSCC WXS blood_normal CPT0186960002 CPT0186960002.WholeExome.RP-1303.bam 28716065777 BAM aligned CPTAC3 c83f8ebe-a9a6-4dce-97c7-b40da56dc127 848d53fc4c8044e569059bb8900453f3 {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal"} -C3N-02289.WXS.N.hg38 C3N-02289 LSCC WXS blood_normal CPT0186960002 d174d5b0-e1a6-4c90-9d07-707541183a9b_wxs_gdc_realn.bam 40606121413 BAM harmonized CPTAC3 899a7f1c-1488-4359-99ed-7369191b8979 90433665e621b64ecfe7f6ed6b6018b9 {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal"} -C3N-02289.WXS.T C3N-02289 LSCC WXS tumor CPT0186180006 CPT0186180006.WholeExome.RP-1303.bam 25757585739 BAM aligned CPTAC3 033e8364-c85c-45cc-8ee2-c07a97d5a8ee 1a5dd9a98f664a14e4525c91ec4c1f11 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor"} -C3N-02289.WXS.T.hg38 C3N-02289 LSCC WXS tumor CPT0186180006 45f472fc-d103-4071-935b-35f943d1b608_wxs_gdc_realn.bam 35860070447 BAM harmonized CPTAC3 92db6b44-4d33-4e85-88fd-f84a30b6cb7c 86857134b6019175c51b7a5bc459a7ed {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor"} -C3N-02290.MethArray.Green.A C3N-02290 LUAD Methylation_Array tissue_normal CPT0187030005 203219670066_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5fa16dcd-cf3c-4683-89ad-c3bbbffea4ab 303f521fae3879239e216c250f742648 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.MethArray.Green.T C3N-02290 LUAD Methylation_Array tumor CPT0187010006 203219670019_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1cd3b874-1f0a-4daa-8a59-48cb3c7b4905 1b1c58393f6327263144f985d88aec20 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor"} -C3N-02290.MethArray.Red.A C3N-02290 LUAD Methylation_Array tissue_normal CPT0187030005 203219670066_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 ecb3d91b-0643-4f44-902e-343c1a80bc37 b44a5360ad6ae8e7297d75f876865a84 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.MethArray.Red.T C3N-02290 LUAD Methylation_Array tumor CPT0187010006 203219670019_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e22eb5d2-94da-4f80-b4b1-bc1245a9cd5a 3d85edda44e4782b9cee46f060ba5898 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor"} -C3N-02290.miRNA-Seq.A.hg38 C3N-02290 LUAD miRNA-Seq tissue_normal CPT0187030007 b7a1dfa0-ffc2-4a86-9e8b-85058bc7488d_mirnaseq_gdc_realn.bam 276156920 BAM harmonized CPTAC3 f1370279-eb12-4f6e-a5af-2e75a8b736e0 55bd2ea06bdd2593a81a9005f863f72f {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.miRNA-Seq.S17_L006_R1.A C3N-02290 LUAD miRNA-Seq tissue_normal CPT0187030007 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L006_R1_001.unaln.bam 250825290 BAM S17_L006_R1 unaligned CPTAC3 da028fb8-5332-492c-94a7-018c9e7ef442 c9a6fa3c0c873c5aead81b69b82077a0 {"aliquot_tag": "ALQ_c03a81c6", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.miRNA-Seq.S2_L008_R1.T C3N-02290 LUAD miRNA-Seq tumor CPT0187010009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L008_R1_001.unaln.bam 141555039 BAM S2_L008_R1 unaligned CPTAC3 4d368481-cbcd-47f8-88fb-a98500c2fa59 99d3a54dd4ee33d0945d0e1c9fc301e2 {"aliquot_tag": "ALQ_5d42ffa1", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02290.miRNA-Seq.T.hg38 C3N-02290 LUAD miRNA-Seq tumor CPT0187010009 20d5558b-3f69-4bf8-8ba4-dec0e365c778_mirnaseq_gdc_realn.bam 153949128 BAM harmonized CPTAC3 5dc5dc46-a129-40ff-85f7-4b21d4df4e65 0167c3bcb52c02382db42326118ab591 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor"} -C3N-02290.RNA-Seq.chimeric.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.chimeric.gdc_realn.bam 61119857 BAM chimeric harmonized CPTAC3 255a157f-2597-43b3-b4d1-8dd4003263b6 9bde9a3aadd2447e782927736d3c071f {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.RNA-Seq.chimeric.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.chimeric.gdc_realn.bam 319390924 BAM chimeric harmonized CPTAC3 f75ed3a2-d693-40e4-8d9f-98607ffa0e8e 7f7caa75df91de98a36f965ecf01f071 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor"} -C3N-02290.RNA-Seq.genomic.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.genomic.gdc_realn.bam 9967250337 BAM genomic harmonized CPTAC3 549a1f70-7a5e-4856-b408-10d0c42f4a1e 456ccd387b114b2e2cf9130d1294f4f8 {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.RNA-Seq.genomic.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.genomic.gdc_realn.bam 10317323419 BAM genomic harmonized CPTAC3 fccd315f-0ca6-48af-bc29-f1084ef81178 111af0e8e6e7bff92ec6a24823df6f86 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor"} -C3N-02290.RNA-Seq.S16_L005_R1.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R1_001.fastq.gz 4595508039 FASTQ S16_L005_R1 unaligned CPTAC3 e3a96a81-b8e8-4b23-ad10-88cea613702b 981263d3e01edbc1467b7d8e58c5ff59 {"aliquot_tag": "ALQ_c03a81c6", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.RNA-Seq.S16_L005_R2.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R2_001.fastq.gz 4678562004 FASTQ S16_L005_R2 unaligned CPTAC3 1a160126-dc86-454c-836f-0a8062bb21ea 1eecce4db886f19b3dad5cea5a2c40e0 {"aliquot_tag": "ALQ_c03a81c6", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.RNA-Seq.S23_L007_R1.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R1_001.fastq.gz 4690579368 FASTQ S23_L007_R1 unaligned CPTAC3 39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9 7dbf9403dd76cf4b94fa644785f10696 {"aliquot_tag": "ALQ_5d42ffa1", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02290.RNA-Seq.S23_L007_R2.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R2_001.fastq.gz 4522792261 FASTQ S23_L007_R2 unaligned CPTAC3 ac88605a-47e9-408e-aca0-7ee694936066 dfb99106cf9c02e003a4dc34f2f10303 {"aliquot_tag": "ALQ_5d42ffa1", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02290.RNA-Seq.transcriptome.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.transcriptome.gdc_realn.bam 11848976371 BAM transcriptome harmonized CPTAC3 c2105d71-e9b1-45b9-a380-ee674ff7078c e5eed3fbd15c73fe6e7d6d681c79b880 {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.RNA-Seq.transcriptome.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.transcriptome.gdc_realn.bam 11680336882 BAM transcriptome harmonized CPTAC3 b602f2f7-7e81-4041-a75e-325dd5ac76b5 d9dfa5b59c02addf1dd143869f24ddf4 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor"} -C3N-02290.WGS.N C3N-02290 LUAD WGS blood_normal CPT0187070002 CPT0187070002.WholeGenome.RP-1303.bam 127695492391 BAM aligned CPTAC3 6c5725b5-ccdd-4e10-b320-52f0063105d7 8f3352f176ec125617f8308596ba83b6 {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02290.WGS.N.hg38 C3N-02290 LUAD WGS blood_normal CPT0187070002 73ca30a6-3d6a-4c8b-96e5-991564146108_wgs_gdc_realn.bam 184225340399 BAM harmonized CPTAC3 02edb76d-23b0-42b7-a452-b92739131516 e2763438d4d04c73f2d36a649b9cc1eb {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02290.WGS.T C3N-02290 LUAD WGS tumor CPT0187010006 CPT0187010006.WholeGenome.RP-1303.bam 87571459270 BAM aligned CPTAC3 ed95c59c-0f3c-4484-bb25-5c0352e6e1a9 af6a1dd0de7c6efa17dcadafc95d9f53 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor"} -C3N-02290.WGS.T.hg38 C3N-02290 LUAD WGS tumor CPT0187010006 801d75b8-016b-4a06-9af7-6f00a9449d66_wgs_gdc_realn.bam 125446074964 BAM harmonized CPTAC3 481faef8-8d03-4082-978b-d55cb373fd4f a77741ae746674b78f4ee185b6259989 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor"} -C3N-02290.WXS.A C3N-02290 LUAD WXS tissue_normal CPT0187030005 CPT0187030005.WholeExome.RP-1303.bam 29693053255 BAM aligned CPTAC3 f672d6a4-c3db-4d0b-95e4-9d71417ac8cf 595ece5c54e70addae42b38c4457ca08 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.WXS.A.hg38 C3N-02290 LUAD WXS tissue_normal CPT0187030005 871b29fb-3af5-4a09-abc0-f11504688d46_wxs_gdc_realn.bam 40756044421 BAM harmonized CPTAC3 cc87aa40-2e4d-49b1-b6e5-22e222a3542c ba6585e109947cfe5b95b5f09b736cb8 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02290.WXS.N C3N-02290 LUAD WXS blood_normal CPT0187070002 CPT0187070002.WholeExome.RP-1303.bam 18101199887 BAM aligned CPTAC3 bf08ee39-d0c4-434d-aa3f-e0252314d504 2969e5e79a76bb916adf17d92b224860 {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02290.WXS.N.hg38 C3N-02290 LUAD WXS blood_normal CPT0187070002 73ca30a6-3d6a-4c8b-96e5-991564146108_wxs_gdc_realn.bam 24224851770 BAM harmonized CPTAC3 dca076f4-1d01-45a0-b937-193cefeb4201 b7b13160551c01df000e2d6a046079d0 {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02290.WXS.T C3N-02290 LUAD WXS tumor CPT0187010006 CPT0187010006.WholeExome.RP-1303.bam 26472199775 BAM aligned CPTAC3 8f34a887-9b82-46d4-9d3e-6526f8c8ea26 74641a0f06c781ae203232c55f7e4f54 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor"} -C3N-02290.WXS.T.hg38 C3N-02290 LUAD WXS tumor CPT0187010006 801d75b8-016b-4a06-9af7-6f00a9449d66_wxs_gdc_realn.bam 36846225684 BAM harmonized CPTAC3 0b47cc59-7d97-433a-bfcd-67d71fd01d44 18ec090aa764602c7b330a2824cb12ef {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor"} -C3N-02295.MethArray.Green.A C3N-02295 PDA Methylation_Array tissue_normal CPT0187540007 203561450030_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9d883bda-a03a-4515-9e30-38e4d7a6e8a7 105d922c73e3bbb074b0d74962d5f308 {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02295.MethArray.Green.T C3N-02295 PDA Methylation_Array tumor CPT0187550007 203561450084_R01C01_Grn.idat 13676210 IDAT Green NA CPTAC3 8d47a5db-d0a9-483c-a874-c90ac92c7c57 849cdba00af34836e48d135e7a1e06d0 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor"} -C3N-02295.MethArray.Red.A C3N-02295 PDA Methylation_Array tissue_normal CPT0187540007 203561450030_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 0678b837-4f14-42e0-807b-a3097d30ea02 0df7673101881e91113e8434b51602d9 {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02295.MethArray.Red.T C3N-02295 PDA Methylation_Array tumor CPT0187550007 203561450084_R01C01_Red.idat 13676210 IDAT Red NA CPTAC3 00db9834-8045-4784-b63d-719f94ac349b 56fe3e0945c9408b7f2c6bd192a0dfe7 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor"} -C3N-02295.miRNA-Seq.S48_L006_R1.T C3N-02295 PDA miRNA-Seq tumor CPT0187550010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 250372141 BAM S48_L006_R1 unaligned CPTAC3 b3e360a6-1aef-455d-9f51-ac8bcafbd0b1 0829c1552006ba77c78703a90c352038 {"aliquot_tag": "ALQ_98c84137", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02295.miRNA-Seq.T.hg38 C3N-02295 PDA miRNA-Seq tumor CPT0187550010 7888ceea-bbbc-42f7-8272-fc00d123fe3b_mirnaseq_gdc_realn.bam 286565023 BAM harmonized CPTAC3 567d9a17-9cb7-4221-9ca8-164533ddb228 f3795d2ccc8690647b97c6b5792d6a8a {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor"} -C3N-02295.RNA-Seq.chimeric.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.chimeric.gdc_realn.bam 153719094 BAM chimeric harmonized CPTAC3 f9c05a89-e6a5-4cba-a302-4efdb9794f62 1f22c35892f4e2cf85c1eec62d4bf5cf {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor"} -C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.genomic.gdc_realn.bam 9069892908 BAM genomic harmonized CPTAC3 ac19d24e-8293-47f2-b031-42740349b60a 07d9a3f90bd7e5d2a5cc4ef2c07b691e {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor"} -C3N-02295.RNA-Seq.S24_L006_R1.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3742479935 FASTQ S24_L006_R1 unaligned CPTAC3 14b4b5bd-ba97-4a24-b0d7-0df326984d51 98d16d774f91a9b7de5ad3eb3902b677 {"aliquot_tag": "ALQ_98c84137", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02295.RNA-Seq.S24_L006_R2.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 3883901902 FASTQ S24_L006_R2 unaligned CPTAC3 2511ef1a-6268-4f0f-aa35-53e07ae3ec43 8e9a40a7b3f69c7acece27ec06f197cf {"aliquot_tag": "ALQ_98c84137", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02295.RNA-Seq.transcriptome.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.transcriptome.gdc_realn.bam 8576070402 BAM transcriptome harmonized CPTAC3 963572dc-a16f-463f-a811-9388a8255e12 5ea02305c2371a645fb3409ac5b0eb2d {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor"} -C3N-02295.WGS.N C3N-02295 PDA WGS blood_normal CPT0187580002 CPT0187580002.WholeGenome.RP-1303.bam 81020343239 BAM aligned CPTAC3 ed904aab-3df3-44d6-bb02-030cad8ac100 8ce4259c1a75fce3fd56878e6cea7f21 {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02295.WGS.N.hg38 C3N-02295 PDA WGS blood_normal CPT0187580002 2b52e0f0-76f7-450b-9111-2b3620ff77ae_wgs_gdc_realn.bam 117148874345 BAM harmonized CPTAC3 254ba69b-cf57-4383-b912-f0eb2e55ed7e fb24613a6ffbee46dec51ca2dd06ba88 {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02295.WGS.T C3N-02295 PDA WGS tumor CPT0187550007 CPT0187550007.WholeGenome.RP-1303.bam 128946497623 BAM aligned CPTAC3 b9568d93-4fa2-4d67-bc32-ad2eddacbe41 2e473ce10ab445853c43b135b665122b {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor"} -C3N-02295.WGS.T.hg38 C3N-02295 PDA WGS tumor CPT0187550007 7ce7f381-6602-4f47-86ab-125107c222cf_wgs_gdc_realn.bam 188853194552 BAM harmonized CPTAC3 4ca8965e-f646-4db7-8cec-3532197119f0 decaf719e5c7f248faf697b7dea7e0f2 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor"} -C3N-02295.WXS.A C3N-02295 PDA WXS tissue_normal CPT0187540007 CPT0187540007.WholeExome.RP-1303.bam 17239033208 BAM aligned CPTAC3 715067e4-ba81-445f-9b02-07635a68eee6 573f01c77de65e8bf4d515ca64ce41dc {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02295.WXS.A.hg38 C3N-02295 PDA WXS tissue_normal CPT0187540007 d6caa3dd-afef-4946-af54-64a3357970bc_wxs_gdc_realn.bam 23536797529 BAM harmonized CPTAC3 551a8d31-c8ba-43b3-8bad-a3ff4985bed5 726a7e4ac80cf86cc4b2d8a38ffcd8f2 {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02295.WXS.N C3N-02295 PDA WXS blood_normal CPT0187580002 CPT0187580002.WholeExome.RP-1303.bam 24401623459 BAM aligned CPTAC3 9e113af0-669f-4a26-8315-a6b0faeed530 61590f17420f83003b77fc5123ec9291 {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02295.WXS.N.hg38 C3N-02295 PDA WXS blood_normal CPT0187580002 2b52e0f0-76f7-450b-9111-2b3620ff77ae_wxs_gdc_realn.bam 33816832444 BAM harmonized CPTAC3 88e500c6-e2ce-4bc8-b6c6-aaffd157039d 2d9c3a3e7bb81c45e4d657665a43482c {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal"} -C3N-02295.WXS.T C3N-02295 PDA WXS tumor CPT0187550007 CPT0187550007.WholeExome.RP-1303.bam 52238029815 BAM aligned CPTAC3 309ff49f-b42c-46ac-951c-a78e1d1f9c57 5049cb16c51bc2db7c95ba985e967d67 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor"} -C3N-02295.WXS.T.hg38 C3N-02295 PDA WXS tumor CPT0187550007 7ce7f381-6602-4f47-86ab-125107c222cf_wxs_gdc_realn.bam 72687130302 BAM harmonized CPTAC3 3acb49c1-b8a6-4c0e-8c98-d99c7e140617 13443292e4adc598b12fe1c4c16037ce {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor"} -C3N-02296.MethArray.Green.T C3N-02296 UCEC Methylation_Array tumor CPT0181750007 203561450023_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 fd97327d-f5dc-4a41-a25d-75c146bab9bf 06556ea6e13d3c4ff83d0f24fe8f391d {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor"} -C3N-02296.MethArray.Red.T C3N-02296 UCEC Methylation_Array tumor CPT0181750007 203561450023_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 f5a3664a-ca1b-4ca6-befb-1892dafbd17d 95979243b907d5a3e746cee00daa9fca {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor"} -C3N-02296.miRNA-Seq.S11_L001_R1.T C3N-02296 UCEC miRNA-Seq tumor CPT0181750010 190508_UNC31-K00269_0215_BH7FYKBBXY_GGCTAC_S11_L001_R1_001.unaln.bam 222233772 BAM S11_L001_R1 unaligned CPTAC3 f7144f2c-f7c7-410c-8ae7-e38f46696cc2 b2c317f729edbebaa9ab8e57ab6ce78c {"aliquot_tag": "ALQ_b6d0d506", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02296.miRNA-Seq.T.hg38 C3N-02296 UCEC miRNA-Seq tumor CPT0181750010 477834f2-9734-4765-b922-41ce2b541168_mirnaseq_gdc_realn.bam 253176962 BAM harmonized CPTAC3 443bb8b5-caa8-4f50-83ac-bc09bd337da6 e6c60e6e4b51c3c2f895acce200717d8 {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.chimeric.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.chimeric.gdc_realn.bam 27333199 BAM chimeric harmonized CPTAC3 cab9c7d6-700a-4382-ae41-87bae3f1579b e5cbaebdbb8b4f5a385bfd68d6ba2f59 {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.chimeric.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.chimeric.gdc_realn.bam 82008474 BAM chimeric harmonized CPTAC3 543ec380-d4b3-4371-82d4-3529d09cbcc6 33c2224bb33ba4a7245c3168c9d95c0b {"aliquot_tag": "ALQ_2617a07b", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.genomic.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.genomic.gdc_realn.bam 8000022800 BAM genomic harmonized CPTAC3 893f8c34-e100-466a-a574-6c0c52857987 e57027aae664409abe9d64720d58845f {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.genomic.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.genomic.gdc_realn.bam 6145835613 BAM genomic harmonized CPTAC3 966e69d5-291a-448a-92da-e75c60f8a548 126de7e585cb0c7d41a257653570483f {"aliquot_tag": "ALQ_2617a07b", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.S17_L005_R1.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R1_001.fastq.gz 3777809552 FASTQ S17_L005_R1 unaligned CPTAC3 d4cb0eb7-5743-419d-bf52-2ecd6584adc5 1e71a327fe1963925d6308885bbe8f34 {"aliquot_tag": "ALQ_b6d0d506", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.S17_L005_R2.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R2_001.fastq.gz 4294075307 FASTQ S17_L005_R2 unaligned CPTAC3 8e279613-4356-438a-bdc4-f2dd0636bfa5 29b035e8644cf14aa8203ef17a5a9b9a {"aliquot_tag": "ALQ_b6d0d506", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.S37_R1.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R1_001.fastq.gz 3925584328 FASTQ S37_R1 unaligned CPTAC3 fa837b92-9861-4f19-950b-34570bfc26a3 ccc05e9676665f8f54d8eb61708705ee {"aliquot_tag": "ALQ_2617a07b", "sample": "S37", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.S37_R2.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R2_001.fastq.gz 4043349505 FASTQ S37_R2 unaligned CPTAC3 e3589299-e784-4d69-b135-8429b2b9f4dd 73c5166bd517cf1459fe9b9d09c84538 {"aliquot_tag": "ALQ_2617a07b", "sample": "S37", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.transcriptome.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.transcriptome.gdc_realn.bam 9005006478 BAM transcriptome harmonized CPTAC3 bbe16c89-5b65-46a1-942d-c1d3ca22c1df d6f8b6d973cbfb0b78640bcc2600a53f {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor"} -C3N-02296.RNA-Seq.transcriptome.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.transcriptome.gdc_realn.bam 3491190138 BAM transcriptome harmonized CPTAC3 e78aea99-5030-47c8-ac79-6f593316cc4b 64dabde4c52272bb63d2b85ee59751fe {"aliquot_tag": "ALQ_2617a07b", "gdc_sample_type": "Primary Tumor"} -C3N-02296.WGS.N C3N-02296 UCEC WGS blood_normal CPT0181800002 CPT0181800002.WholeGenome.RP-1303.bam 67991657844 BAM aligned CPTAC3 e0170187-b9bc-4c22-a231-ac8385394688 0c8a3c17a756215524ec8bbfb25c0d5a {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-02296.WGS.N.hg38 C3N-02296 UCEC WGS blood_normal CPT0181800002 38b1683f-1ef5-4461-9b87-8d56ab949bb5_wgs_gdc_realn.bam 101022019618 BAM harmonized CPTAC3 5221bce8-09e9-4a61-a689-239333730b82 687680c11a0b81a256d3e378ac16f765 {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-02296.WGS.T C3N-02296 UCEC WGS tumor CPT0181750007 CPT0181750007.WholeGenome.RP-1303.bam 93581911810 BAM aligned CPTAC3 11757ed4-777c-4c80-920d-e92741ca28bf 5f907be9baed5eeeea1939919812c6ce {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor"} -C3N-02296.WGS.T.hg38 C3N-02296 UCEC WGS tumor CPT0181750007 868c6a57-64e0-450f-a151-139f5520286d_wgs_gdc_realn.bam 137328908321 BAM harmonized CPTAC3 b22c50b5-e3ef-48cd-ab42-0d6012bcc5c7 62bd295aaade83e1cfb2e14124d71338 {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor"} -C3N-02296.WXS.N C3N-02296 UCEC WXS blood_normal CPT0181800002 CPT0181800002.WholeExome.RP-1303.bam 29179698030 BAM aligned CPTAC3 a9b0a4bf-c08c-4067-87ca-6de18d429ea3 0499dc2cc0cd93f9cd256b8748303c9e {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-02296.WXS.N.hg38 C3N-02296 UCEC WXS blood_normal CPT0181800002 38b1683f-1ef5-4461-9b87-8d56ab949bb5_wxs_gdc_realn.bam 40336658237 BAM harmonized CPTAC3 0dbdc7cc-21ca-4aa0-af91-419701c32f6a b1e739f4fe06226c6b42486bbc056ba3 {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-02296.WXS.T C3N-02296 UCEC WXS tumor CPT0181750007 CPT0181750007.WholeExome.RP-1303.bam 25075013315 BAM aligned CPTAC3 ee0e9a22-ea1b-4bbb-876c-8ef889cd1fc5 5cf52d37567fd5bced1377d1c49ad5a7 {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor"} -C3N-02296.WXS.T.hg38 C3N-02296 UCEC WXS tumor CPT0181750007 868c6a57-64e0-450f-a151-139f5520286d_wxs_gdc_realn.bam 35065589363 BAM harmonized CPTAC3 6e957dcc-be9b-43c6-bfab-bf86027c7bcf 2d56fe66a690d2eb8ff49094684948c7 {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor"} -C3N-02298.DUP_685702ad.WGS.T C3N-02298 UCEC WGS tumor CPT0181540011_1 CPT0181540011_1.WholeGenome.RP-1303.bam 84904324723 BAM aligned CPTAC3 2b5a4b6e-a856-4dbf-926e-53a8d9c87ac6 25a1e13523d61d22892ac0243756e57c {"aliquot_tag": "DUP_685702ad", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3N-02298.DUP_685702ad.WGS.T.hg38 C3N-02298 UCEC WGS tumor CPT0181540011_1 c4172299-9d30-448b-982f-cea1391d7d05_wgs_gdc_realn.bam 121732677923 BAM harmonized CPTAC3 d1651a46-cc2f-4694-9861-f68ace614190 436625cdeb59cfc4b95932ae414b9513 {"aliquot_tag": "DUP_685702ad", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3N-02298.MethArray.Green.T C3N-02298 UCEC Methylation_Array tumor CPT0181540011 203561450099_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 eccafdb3-11a8-49f3-9892-141f085e94b2 a9b91535f927787d71d54124f551b179 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor"} -C3N-02298.MethArray.Red.T C3N-02298 UCEC Methylation_Array tumor CPT0181540011 203561450099_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 cd149e4d-9e55-47f5-b16e-2aa9bb330598 61f2500e8f1e2d2b645b5729a3cc6652 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor"} -C3N-02298.miRNA-Seq.S7_L003_R1.T C3N-02298 UCEC miRNA-Seq tumor CPT0181540014 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGATC_S7_L003_R1_001.unaln.bam 266366872 BAM S7_L003_R1 unaligned CPTAC3 bde8c5c2-140f-43cd-81ef-a6ba8dbbfbea 88df98548cd23bb86603a35001e680a4 {"aliquot_tag": "ALQ_c11599a4", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02298.miRNA-Seq.T.hg38 C3N-02298 UCEC miRNA-Seq tumor CPT0181540014 2878a2b4-7f2c-4a0a-bfc2-f254db7e4d6b_mirnaseq_gdc_realn.bam 301883158 BAM harmonized CPTAC3 2657b327-ba5d-46ac-a69c-5d2c65213504 fbd0c98e44a42e4b1c5e99eaec0542c4 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.chimeric.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.chimeric.gdc_realn.bam 41084848 BAM chimeric harmonized CPTAC3 57ce30bc-b294-4c02-97fa-97ffdd771f2d c36d9a837f2d00c093798e1cb3c6f351 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.chimeric.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.chimeric.gdc_realn.bam 205555511 BAM chimeric harmonized CPTAC3 2e781d4b-0c5d-4143-8832-4ea850a1fe89 4008ed7b9e02f27a751a9ac528389fc9 {"aliquot_tag": "ALQ_6561cebe", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.genomic.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.genomic.gdc_realn.bam 8848806046 BAM genomic harmonized CPTAC3 5c7e6c43-2e63-4ea1-af6b-937240b529e9 781f9cbd593d4c3c41899df94d9247d1 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.genomic.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.genomic.gdc_realn.bam 10553987540 BAM genomic harmonized CPTAC3 1389c645-113c-499b-bfa9-606e1020ef93 7eaa4e9d0cda4a8b8279195c0527277a {"aliquot_tag": "ALQ_6561cebe", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.S1_L001_R1.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 4127484729 FASTQ S1_L001_R1 unaligned CPTAC3 aaca3879-899a-4ddf-b2e9-9024cbda9e71 a1de4415aa2aa4005ea95ac7d5554a0c {"aliquot_tag": "ALQ_c11599a4", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.S1_L001_R2.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4769707164 FASTQ S1_L001_R2 unaligned CPTAC3 0830ccd3-4258-48b7-835b-cc0fa004644d cf4f2b070042ad9a39dc98824fb8a2b9 {"aliquot_tag": "ALQ_c11599a4", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.S94_R1.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R1_001.fastq.gz 7356800783 FASTQ S94_R1 unaligned CPTAC3 9edf50c8-0477-49a3-8d0f-fc0a7c92360c 805d7d252336e826cf020048c64ce599 {"aliquot_tag": "ALQ_6561cebe", "sample": "S94", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.S94_R2.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R2_001.fastq.gz 7435454526 FASTQ S94_R2 unaligned CPTAC3 3e5a9b90-f842-4103-b8a6-d13f8c517ddc 08ace21fd1788b76f5e9e54c994966dc {"aliquot_tag": "ALQ_6561cebe", "sample": "S94", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.transcriptome.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.transcriptome.gdc_realn.bam 13295725310 BAM transcriptome harmonized CPTAC3 f6050ca8-8993-4ec4-a506-6f8a479338bb 3281acdfac41f32df05efd3a25089625 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor"} -C3N-02298.RNA-Seq.transcriptome.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.transcriptome.gdc_realn.bam 6868148317 BAM transcriptome harmonized CPTAC3 d053eb02-2140-4582-92b0-061e6c2fc143 d90b4a8adde611ef6e9d5b150d8c43ac {"aliquot_tag": "ALQ_6561cebe", "gdc_sample_type": "Primary Tumor"} -C3N-02298.WGS.N C3N-02298 UCEC WGS blood_normal CPT0181590002 CPT0181590002.WholeGenome.RP-1303.bam 72470198572 BAM aligned CPTAC3 3ade8387-9a55-4c4e-aba5-b54e7d394bce 803f002a5dcd2cdf231d03c4488b69bc {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02298.WGS.N.hg38 C3N-02298 UCEC WGS blood_normal CPT0181590002 349b2062-2354-4d2c-b73a-a9edc1b9bb8d_wgs_gdc_realn.bam 105695375521 BAM harmonized CPTAC3 e5ed742b-3d0d-4f0c-b809-01d07b7e2fd4 bd015c33f1078a91c3d2ad9de5224d55 {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02298.WGS.T C3N-02298 UCEC WGS tumor CPT0181540011 CPT0181540011.WholeGenome.RP-1303.bam 24798515329 BAM aligned CPTAC3 f0aa6400-2b52-4ace-8cd3-d88a1971204a dd6cfa56a9b8b59bd2d1fcd2cf2035bf {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor"} -C3N-02298.WGS.T.hg38 C3N-02298 UCEC WGS tumor CPT0181540011 93c0c350-e6ac-4b76-95fd-428c202de743_wgs_gdc_realn.bam 34208668136 BAM harmonized CPTAC3 2174b720-f136-468b-b8ea-c6c5714facb0 583e3a15360f5f8788d04e81353594e8 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor"} -C3N-02298.WXS.N C3N-02298 UCEC WXS blood_normal CPT0181590002 CPT0181590002.WholeExome.RP-1303.bam 24952265684 BAM aligned CPTAC3 a9ca9713-6f48-4e81-bfbe-a1c5fac3fe00 484e9b5cb822492a128d7010d75c74c9 {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02298.WXS.N.hg38 C3N-02298 UCEC WXS blood_normal CPT0181590002 349b2062-2354-4d2c-b73a-a9edc1b9bb8d_wxs_gdc_realn.bam 34012491413 BAM harmonized CPTAC3 816f16bc-4e6a-4cdd-a872-2a7204d4865e 42997a70a50e88acb92bd40ef7952511 {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02298.WXS.T C3N-02298 UCEC WXS tumor CPT0181540011 CPT0181540011.WholeExome.RP-1303.bam 24798515401 BAM aligned CPTAC3 74b357c8-b664-4697-8672-d7de315667fe 05f7f981e1cd6af3212e0e45b5de8d8f {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor"} -C3N-02298.WXS.T.hg38 C3N-02298 UCEC WXS tumor CPT0181540011 93c0c350-e6ac-4b76-95fd-428c202de743_wxs_gdc_realn.bam 34422107369 BAM harmonized CPTAC3 9b01bb2d-5ace-474c-98ee-7e8ae40a26ac 21faa05e8a28ab3b0d1ad440045f7394 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor"} -C3N-02300.MethArray.Green.T C3N-02300 LSCC Methylation_Array tumor CPT0126810006 203219640158_R01C01_Grn.idat 13676220 IDAT Green NA CPTAC3 37318126-6477-4a0b-822e-c504c849063c e6897947ab1c666779ce3180282038da {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor"} -C3N-02300.MethArray.Red.T C3N-02300 LSCC Methylation_Array tumor CPT0126810006 203219640158_R01C01_Red.idat 13676220 IDAT Red NA CPTAC3 b1347749-faaa-4c61-9d27-2adc5cb1c997 fba38e43efca00e103220b15d84121fd {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor"} -C3N-02300.miRNA-Seq.A.hg38 C3N-02300 LSCC miRNA-Seq tissue_normal CPT0126830006 46e75d1f-0d5e-4894-b2e8-463581c71657_mirnaseq_gdc_realn.bam 279117040 BAM harmonized CPTAC3 0d5fd255-5a7d-49d2-8b21-b16102b1f039 56b7316da8d68b590379c604eee2b1aa {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02300.miRNA-Seq.S14_L001_R1.T C3N-02300 LSCC miRNA-Seq tumor CPT0126810009 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTTCC_S14_L001_R1_001.unaln.bam 266061898 BAM S14_L001_R1 unaligned CPTAC3 175b65f0-9af5-4f74-bb5d-c0f1681b2c01 2c59097fbc8cdd838cb0cdcd3e854cb6 {"aliquot_tag": "ALQ_86a66ab0", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02300.miRNA-Seq.S43_L002_R1.A C3N-02300 LSCC miRNA-Seq tissue_normal CPT0126830006 181219_UNC31-K00269_0173_BHYGJJBBXX_TATAAT_S43_L002_R1_001.unaln.bam 245466399 BAM S43_L002_R1 unaligned CPTAC3 2c8ebdee-ab30-471a-ab6a-ff1941c89a33 2542d028592daef839fec1ebcb56f11c {"aliquot_tag": "ALQ_6cd92441", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02300.miRNA-Seq.T.hg38 C3N-02300 LSCC miRNA-Seq tumor CPT0126810009 8d551311-fc57-4c86-ab75-513812df5f04_mirnaseq_gdc_realn.bam 291762804 BAM harmonized CPTAC3 befb31e2-fc29-4ffb-a5ca-4a82c3a1c152 c280309a67b0c2c8e44711af68acd3e7 {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor"} -C3N-02300.RNA-Seq.chimeric.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.chimeric.gdc_realn.bam 25333298 BAM chimeric harmonized CPTAC3 1177e410-c6ef-4555-80b6-30c5e7c0d3f6 085c28325d3e3cd3e72ea7c7b2368286 {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02300.RNA-Seq.chimeric.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.chimeric.gdc_realn.bam 31580263 BAM chimeric harmonized CPTAC3 4c99d89b-f49c-41f2-a00d-94708f9fb78e d2dfe47d944f6e1a6c5714086f195c79 {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor"} -C3N-02300.RNA-Seq.genomic.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.genomic.gdc_realn.bam 7234462231 BAM genomic harmonized CPTAC3 dda2a1ca-60cb-4a47-b396-5f46cdc00219 d43399bd681b0f2d09da69be6fa0bcf7 {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02300.RNA-Seq.genomic.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.genomic.gdc_realn.bam 9576947026 BAM genomic harmonized CPTAC3 2ea026e1-eb5b-4872-bf5d-b79463eecb05 54bb1cc024670bfb8e950e88845fd645 {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor"} -C3N-02300.RNA-Seq.S30_L008_R1.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R1_001.fastq.gz 4200891062 FASTQ S30_L008_R1 unaligned CPTAC3 a75baa4b-2aa6-4501-acff-d3a7dc1ac6e4 b561faeb7c608f7f97996108832866de {"aliquot_tag": "ALQ_86a66ab0", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02300.RNA-Seq.S30_L008_R2.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R2_001.fastq.gz 4472755987 FASTQ S30_L008_R2 unaligned CPTAC3 ae849cb4-5b50-4e71-bd1f-f70dcb64db77 999f1ee609bbe4789f06d68b56569bbe {"aliquot_tag": "ALQ_86a66ab0", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02300.RNA-Seq.S4_L007_R1.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3376960138 FASTQ S4_L007_R1 unaligned CPTAC3 1d3721f9-f99a-4c6e-9811-c1355ff4a7bd 4c758ad01624aa3297aff41df47fe0f6 {"aliquot_tag": "ALQ_6cd92441", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02300.RNA-Seq.S4_L007_R2.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3485988632 FASTQ S4_L007_R2 unaligned CPTAC3 99d881cd-9d4e-43a1-858c-a61d1ad39045 9857be650f56f97529aaa7d2ad19f355 {"aliquot_tag": "ALQ_6cd92441", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02300.RNA-Seq.transcriptome.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.transcriptome.gdc_realn.bam 9682639614 BAM transcriptome harmonized CPTAC3 165a3b5a-adbb-4b7d-8ed1-747a5a83152e 6806134708ea3d2e7292899a9f52dc38 {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02300.RNA-Seq.transcriptome.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.transcriptome.gdc_realn.bam 11779622461 BAM transcriptome harmonized CPTAC3 970a7fcd-8996-4b4d-b0eb-a923d16879ae bbc049e4b8abb682577adce3b2b5605f {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor"} -C3N-02300.WGS.N C3N-02300 LSCC WGS blood_normal CPT0126870002 CPT0126870002.WholeGenome.RP-1303.bam 60773893845 BAM aligned CPTAC3 95f80826-653b-47a0-8370-9252ad923397 90a887bc999273b4e10c20b88b5a3a97 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal"} -C3N-02300.WGS.N.hg38 C3N-02300 LSCC WGS blood_normal CPT0126870002 b5a43bd8-256d-49e7-aa24-af3059dbe2a6_wgs_gdc_realn.bam 88657058284 BAM harmonized CPTAC3 156af5ca-43a0-4ed7-a4f0-f43b8fc3a486 e65e2c67db29187e9330bfcccfdbc4d2 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal"} -C3N-02300.WGS.T C3N-02300 LSCC WGS tumor CPT0126810006 CPT0126810006.WholeGenome.RP-1303.bam 61086507589 BAM aligned CPTAC3 26b105f7-97ec-49f5-9926-c00620479ad8 98fa5a6ec534da377a24cf1ea234bbdd {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor"} -C3N-02300.WGS.T.hg38 C3N-02300 LSCC WGS tumor CPT0126810006 98d7a110-ffda-421d-9fc0-f87a0d921257_wgs_gdc_realn.bam 88136819750 BAM harmonized CPTAC3 248f9ba8-c5ac-42fa-9815-c1d02a6d6ff7 0ea903eee636215a8c85e871e0ef8a15 {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor"} -C3N-02300.WXS.N C3N-02300 LSCC WXS blood_normal CPT0126870002 CPT0126870002.WholeExome.RP-1303.bam 23290348244 BAM aligned CPTAC3 36373eae-0d7c-4a0a-a817-06b581d9ab32 031490cf94ed30e540f7cae0b4a6bd99 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal"} -C3N-02300.WXS.N.hg38 C3N-02300 LSCC WXS blood_normal CPT0126870002 b5a43bd8-256d-49e7-aa24-af3059dbe2a6_wxs_gdc_realn.bam 32065123921 BAM harmonized CPTAC3 efb4390e-7744-4b34-9606-9d263a6dde14 7f50d620b286894fee53e71107de1d31 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal"} -C3N-02300.WXS.T C3N-02300 LSCC WXS tumor CPT0126810006 CPT0126810006.WholeExome.RP-1303.bam 20804545228 BAM aligned CPTAC3 b5ea4e09-3594-4e9e-9778-c2d67ccc8e0c 26c75b665ff137611ce9a27b109f6563 {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor"} -C3N-02300.WXS.T.hg38 C3N-02300 LSCC WXS tumor CPT0126810006 98d7a110-ffda-421d-9fc0-f87a0d921257_wxs_gdc_realn.bam 28482824915 BAM harmonized CPTAC3 ff126e9d-97ea-430d-bce5-60983885212c ab2a9b1f34add4259c5e033b89efe995 {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor"} -C3N-02302.MethArray.Green.T C3N-02302 UCEC Methylation_Array tumor CPT0181610006 203561620040_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 f32ece58-bc22-4007-8d8a-65fb55bf1dae dd1af3dd54addccbebe251d8999161bf {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor"} -C3N-02302.MethArray.Red.T C3N-02302 UCEC Methylation_Array tumor CPT0181610006 203561620040_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 f7b50295-c9c8-4b5e-b419-5005bd71d33d 6bf1d0eebf8cc469ccc8a0cd14915733 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor"} -C3N-02302.miRNA-Seq.S41_L002_R1.T C3N-02302 UCEC miRNA-Seq tumor CPT0181610009 190813_UNC32-K00270_0196_AH5MCWBBXY_CTTGTA_S41_L002_R1_001.unaln.bam 157462933 BAM S41_L002_R1 unaligned CPTAC3 3da87b62-1cae-460b-b066-f0c90c0498ec 99bc78a34677dbc6599051968fdd1c95 {"aliquot_tag": "ALQ_e8cb2986", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02302.miRNA-Seq.T.hg38 C3N-02302 UCEC miRNA-Seq tumor CPT0181610009 3db31096-7e50-465e-8b35-65981245d4ba_mirnaseq_gdc_realn.bam 179152113 BAM harmonized CPTAC3 79672171-0d51-435c-b6b2-df79856ce098 cc699929daddb12adcb8ad39b5da65f4 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.chimeric.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.chimeric.gdc_realn.bam 237868688 BAM chimeric harmonized CPTAC3 099532a6-485e-466a-af19-e2266f26a707 bc60f1532d48c47b174398beabbc25e3 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.chimeric.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.chimeric.gdc_realn.bam 128963289 BAM chimeric harmonized CPTAC3 3a407b01-a7be-47d3-bda6-669f989eae8c 7be69ac36cad44153913c6c95a9f3429 {"aliquot_tag": "ALQ_22c1b46e", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.genomic.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.genomic.gdc_realn.bam 7306421604 BAM genomic harmonized CPTAC3 7b05d470-c65e-4389-9f90-192d59f5872f ef08293301b081cf3c4144055fbf9262 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.genomic.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.genomic.gdc_realn.bam 8434995849 BAM genomic harmonized CPTAC3 d6527870-bdaf-4e38-af53-107ec6254083 df1f9def973d60f8a38d882428012171 {"aliquot_tag": "ALQ_22c1b46e", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.S21_L006_R1.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 2755206862 FASTQ S21_L006_R1 unaligned CPTAC3 b2c0dc56-6c8a-4a26-b1e9-f3516abe3a8c f5d3b9a9b33878f39480a85eea99e265 {"aliquot_tag": "ALQ_e8cb2986", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.S21_L006_R2.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 2801432321 FASTQ S21_L006_R2 unaligned CPTAC3 6dc0ca31-8311-4a14-b402-78fc7a24c7c6 7a2f36edaad79c2aff68a28b3c87b117 {"aliquot_tag": "ALQ_e8cb2986", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.S5_R1.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R1_001.fastq.gz 3939772528 FASTQ S5_R1 unaligned CPTAC3 8f01624d-e213-495a-abd8-1641e8f3d1d2 4e9513ffdd261fbe83db7036d261ddcf {"aliquot_tag": "ALQ_22c1b46e", "sample": "S5", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.S5_R2.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R2_001.fastq.gz 3988555595 FASTQ S5_R2 unaligned CPTAC3 6c6ae92a-6fbd-44e9-858a-d436eaac94dc 5a36fd32d037427f6f6370f0919f88c9 {"aliquot_tag": "ALQ_22c1b46e", "sample": "S5", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.transcriptome.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.transcriptome.gdc_realn.bam 5350350022 BAM transcriptome harmonized CPTAC3 b568421b-97f7-4a29-8787-4f3b4cefaaee 519ee4f16c9d33b9f379ec844b0ce3c4 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor"} -C3N-02302.RNA-Seq.transcriptome.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.transcriptome.gdc_realn.bam 3307183187 BAM transcriptome harmonized CPTAC3 a35ec888-511e-4adc-9081-6130532b59a6 e09b36c26acc08f785652ff696657f08 {"aliquot_tag": "ALQ_22c1b46e", "gdc_sample_type": "Primary Tumor"} -C3N-02302.WGS.N C3N-02302 UCEC WGS blood_normal CPT0181660002 CPT0181660002.WholeGenome.RP-1303.bam 76535186399 BAM aligned CPTAC3 d4c215a5-c635-498d-bb53-0decd657b9ee f40ef772d595e85d5e04f68ef08a4cb6 {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02302.WGS.N.hg38 C3N-02302 UCEC WGS blood_normal CPT0181660002 307efc27-4a1a-4bd5-8705-31e1573bd0fb_wgs_gdc_realn.bam 110881040007 BAM harmonized CPTAC3 ae1586f1-701a-4540-9728-5c2f0ab51d19 31535f0a004eb565de8837f561bfa5df {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02302.WGS.T C3N-02302 UCEC WGS tumor CPT0181610006 CPT0181610006.WholeGenome.RP-1303.bam 68924090536 BAM aligned CPTAC3 1ea2e473-2b8a-448b-a977-748b5c9e63f8 c638afb8770dbe2d8a69738801e15535 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor"} -C3N-02302.WGS.T.hg38 C3N-02302 UCEC WGS tumor CPT0181610006 98562991-cf38-4173-90dd-518f188a593c_wgs_gdc_realn.bam 101473581985 BAM harmonized CPTAC3 0b38e3a6-32a4-42ef-b121-e7bca823c7fd ae9df4a094d9562ce438ef89df4471c7 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor"} -C3N-02302.WXS.N C3N-02302 UCEC WXS blood_normal CPT0181660002 CPT0181660002.WholeExome.RP-1303.bam 25523250379 BAM aligned CPTAC3 b067f5a3-0279-49cd-b54d-3c9e77f81195 332eefa75cfbcf3c62856d7b96ca9fbe {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02302.WXS.N.hg38 C3N-02302 UCEC WXS blood_normal CPT0181660002 307efc27-4a1a-4bd5-8705-31e1573bd0fb_wxs_gdc_realn.bam 35013630318 BAM harmonized CPTAC3 fd647e79-8bf9-4737-a55b-a0fb81c19af3 7c0aa4d84030551261e7905908f34674 {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02302.WXS.T C3N-02302 UCEC WXS tumor CPT0181610006 CPT0181610006.WholeExome.RP-1303.bam 30335238761 BAM aligned CPTAC3 b99e9f73-9aff-4668-9181-57552b31c1d5 a20cb11ad7c098959699005aba2a3e48 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor"} -C3N-02302.WXS.T.hg38 C3N-02302 UCEC WXS tumor CPT0181610006 98562991-cf38-4173-90dd-518f188a593c_wxs_gdc_realn.bam 41216687611 BAM harmonized CPTAC3 62490e1e-a3cf-4ab2-950a-feb37dca2428 d0fe6d15f72b5f1145a8ee172ce2ab99 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor"} -C3N-02332.MethArray.Green.A C3N-02332 CCRCC Methylation_Array tissue_normal CPT0135770006 204930640023_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 8683a2cb-5458-4355-b3a6-9541822cd013 afd757abd708c0c757c23275f33ae2bc {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.MethArray.Green.T C3N-02332 CCRCC Methylation_Array tumor CPT0135740009 203219650165_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b382c73b-0730-487f-a4a4-a7fa3408b500 3f15bad7889a38997304e00c96e8d0cc {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor"} -C3N-02332.MethArray.Red.A C3N-02332 CCRCC Methylation_Array tissue_normal CPT0135770006 204930640023_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 8d6cab79-1f79-4ed1-9a0f-f67903b32276 a0ec64a3c9b9f342090020f598bf74ca {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.MethArray.Red.T C3N-02332 CCRCC Methylation_Array tumor CPT0135740009 203219650165_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 a26af2c1-f2f7-4c82-9cc4-6853f1f87158 2598b54ea1aed698817faa6697eef059 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor"} -C3N-02332.miRNA-Seq.A.hg38 C3N-02332 CCRCC miRNA-Seq tissue_normal CPT0135770009 ba80e56d-05f9-44e9-a5d2-c35ffcbfe2de_mirnaseq_gdc_realn.bam 181680958 BAM harmonized CPTAC3 93cab33c-ce00-4c84-90cb-b27fc13a7186 3ac5271f7dea9cbde82c18e91ac56f5c {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.miRNA-Seq.S30_L003_R1.A C3N-02332 CCRCC miRNA-Seq tissue_normal CPT0135770009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L003_R1_001.unaln.bam 164887972 BAM S30_L003_R1 unaligned CPTAC3 792b596d-fdf1-4664-8fa0-53022b3777ad 121d35f8fcc38c78886dd06b6566789a {"aliquot_tag": "ALQ_5f237c6", "sample": "S30", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.miRNA-Seq.S45_L005_R1.T C3N-02332 CCRCC miRNA-Seq tumor CPT0135740006 190108_UNC31-K00269_0176_AHYGLVBBXX_TCATTC_S45_L005_R1_001.unaln.bam 216096092 BAM S45_L005_R1 unaligned CPTAC3 7054bbd1-02f7-4dab-aad7-49366f0a605a 6baf415763f226a8a91be9508293f369 {"aliquot_tag": "ALQ_d2ed5087", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02332.miRNA-Seq.T.hg38 C3N-02332 CCRCC miRNA-Seq tumor CPT0135740006 b1081533-54c5-4177-abf7-c96e8b4c93af_mirnaseq_gdc_realn.bam 236910776 BAM harmonized CPTAC3 adf38a00-79ff-446b-bc37-e2acbcf583ec 5f0da4da55c4ef277415acad8c6dde3a {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor"} -C3N-02332.RNA-Seq.chimeric.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.chimeric.gdc_realn.bam 90361985 BAM chimeric harmonized CPTAC3 6d03d99e-ff65-4f73-84e8-b6dfbc412ad9 14ad183cb8884fb9a7aec5ab7ccb2c58 {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.RNA-Seq.chimeric.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.chimeric.gdc_realn.bam 34273899 BAM chimeric harmonized CPTAC3 0df64661-ad88-406c-8bff-483e608b65f6 3d77c813255c77df73d89f801da37e2c {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor"} -C3N-02332.RNA-Seq.genomic.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.genomic.gdc_realn.bam 8397339625 BAM genomic harmonized CPTAC3 7bcffd43-8eba-4f79-9b33-112d2b4f8b29 951aa8679e85f53109601c46ddca382c {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.RNA-Seq.genomic.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.genomic.gdc_realn.bam 7770870244 BAM genomic harmonized CPTAC3 351ca12c-cfbc-4035-b219-3c7f4cb5ba42 74a9f9e643f15c126d7d92b9cdf8465b {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor"} -C3N-02332.RNA-Seq.S12_L005_R1.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R1_001.fastq.gz 3819899797 FASTQ S12_L005_R1 unaligned CPTAC3 9f68e3f0-fd45-42b2-97ae-3e321ac596b9 47f9a9c4c71060a236d27e2cd58047a3 {"aliquot_tag": "ALQ_5f237c6", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.RNA-Seq.S12_L005_R2.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R2_001.fastq.gz 4015907335 FASTQ S12_L005_R2 unaligned CPTAC3 1f58a2d8-4839-4469-8f08-6d4b0f06e25d 58db1a78f544b07e93869a31c452adab {"aliquot_tag": "ALQ_5f237c6", "sample": "S12", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.RNA-Seq.S76_L008_R1.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R1_001.fastq.gz 3679221495 FASTQ S76_L008_R1 unaligned CPTAC3 16540bbd-fce7-4f83-8dc3-66a7e65c5d8d 1ae8272122c29bc9062678875165b265 {"aliquot_tag": "ALQ_d2ed5087", "sample": "S76", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02332.RNA-Seq.S76_L008_R2.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R2_001.fastq.gz 3943506793 FASTQ S76_L008_R2 unaligned CPTAC3 84d8e419-8b42-4f1e-9e2b-2c899ee9591a 865a7470888f314aece40dcab222f6a5 {"aliquot_tag": "ALQ_d2ed5087", "sample": "S76", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02332.RNA-Seq.transcriptome.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.transcriptome.gdc_realn.bam 9740722662 BAM transcriptome harmonized CPTAC3 02fb3a9a-e3cc-4289-abd7-d8f42bf63b31 1c028052b231c7444f9c732b0991d92b {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.RNA-Seq.transcriptome.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.transcriptome.gdc_realn.bam 9817022410 BAM transcriptome harmonized CPTAC3 d854a6ed-9ada-41c4-a2e9-e6dda8dc7a7e cf2e30fe3f74cf61190910893cd168fa {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor"} -C3N-02332.WGS.N C3N-02332 CCRCC WGS blood_normal CPT0135860002 CPT0135860002.WholeGenome.RP-1303.bam 53106306070 BAM aligned CPTAC3 a9354ce8-f0aa-4006-b43d-1043b3996d1d 7a529e8d5876e0c849c68bd3139c11da {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02332.WGS.N.hg38 C3N-02332 CCRCC WGS blood_normal CPT0135860002 225b554b-e33a-463e-a6d8-699f7692b126_wgs_gdc_realn.bam 76482193491 BAM harmonized CPTAC3 93e5a295-e6c0-4a31-9c06-258d370e953f d72956281afe31394d1dcf3fb86a97b9 {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02332.WGS.T C3N-02332 CCRCC WGS tumor CPT0135740009 CPT0135740009.WholeGenome.RP-1303.bam 49163161167 BAM aligned CPTAC3 927ad429-710b-4bb9-bb15-edd653287a74 96b0587150f19fa3f31c4e11c3cce6bc {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor"} -C3N-02332.WGS.T.hg38 C3N-02332 CCRCC WGS tumor CPT0135740009 04092f66-6cc3-4ef8-8c43-0fa96c464b13_wgs_gdc_realn.bam 72183201314 BAM harmonized CPTAC3 eaa3068c-8688-43ba-98d9-38a890af74a2 6492251792dccba36a01a50ce0caee39 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor"} -C3N-02332.WXS.A C3N-02332 CCRCC WXS tissue_normal CPT0135770006 CPT0135770006.WholeExome.RP-1303.bam 37275598702 BAM aligned CPTAC3 5377bfcd-b4c5-4486-920e-a0245a6cb10d e10e5c8ff896e26c0209e534e8b435fa {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.WXS.A.hg38 C3N-02332 CCRCC WXS tissue_normal CPT0135770006 f45faed8-fbba-4e20-9207-9f19473ad439_wxs_gdc_realn.bam 51835056278 BAM harmonized CPTAC3 a5d47d63-ef13-41cf-8bc6-039385ee18f6 6639924a6ccb23c6d7968b8d6cf5303b {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02332.WXS.N C3N-02332 CCRCC WXS blood_normal CPT0135860002 CPT0135860002.WholeExome.RP-1303.bam 22045172777 BAM aligned CPTAC3 8c9b141c-36d7-43a7-9a1e-0dbfbd5bb89a c3420254267d1c426a6ba470215a7978 {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02332.WXS.N.hg38 C3N-02332 CCRCC WXS blood_normal CPT0135860002 225b554b-e33a-463e-a6d8-699f7692b126_wxs_gdc_realn.bam 30056429242 BAM harmonized CPTAC3 5aaf2040-0346-46f6-b2ce-58c6e2aab25d 5885ad2469789f7c67610357ba0c5856 {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02332.WXS.T C3N-02332 CCRCC WXS tumor CPT0135740009 CPT0135740009.WholeExome.RP-1303.bam 26344860245 BAM aligned CPTAC3 c45dd4a9-bbf3-4e71-8157-c0a05c6a113b 6338959d379de4c5b9c72e49cee82ac2 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor"} -C3N-02332.WXS.T.hg38 C3N-02332 CCRCC WXS tumor CPT0135740009 04092f66-6cc3-4ef8-8c43-0fa96c464b13_wxs_gdc_realn.bam 35509313196 BAM harmonized CPTAC3 5b605b6a-ab9a-46ab-8a2e-ee304855f678 0bbfa5b70bb4a1b32d16c04b0499b815 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor"} -C3N-02333.MethArray.Green.A C3N-02333 HNSCC Methylation_Array tissue_normal CPT0176790006 203220070084_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 19dd72df-583f-4905-a884-7c5a7a7cad87 dc9b9068b7834f36c47c5f820a9ec04a {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.MethArray.Green.T C3N-02333 HNSCC Methylation_Array tumor CPT0176770006 203273200155_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ecc582d2-fcf0-40b6-8556-bb6651a1662c aa265c8efbb3e3815a7935a95fbe23ab {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor"} -C3N-02333.MethArray.Red.A C3N-02333 HNSCC Methylation_Array tissue_normal CPT0176790006 203220070084_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 3f4efdbe-cbbd-4c26-a64e-2f153990da04 9ac4f5eafdb65b853884c9960fdf54d7 {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.MethArray.Red.T C3N-02333 HNSCC Methylation_Array tumor CPT0176770006 203273200155_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 e5f52819-b925-421f-bbc1-6efac2e35318 310c02fac799795adbcbce112a75af5c {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor"} -C3N-02333.miRNA-Seq.A.hg38 C3N-02333 HNSCC miRNA-Seq tissue_normal CPT0176790009 5006fcf4-feed-44ea-af33-5aa5911c2aaf_mirnaseq_gdc_realn.bam 321160062 BAM harmonized CPTAC3 c5ecf971-204a-4674-a6f4-ec6a5b857442 fedd8caadc5f6433ee92f3847f36fa21 {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.miRNA-Seq.S39_L002_R1.T C3N-02333 HNSCC miRNA-Seq tumor CPT0176770009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTATAC_S39_L002_R1_001.unaln.bam 227376898 BAM S39_L002_R1 unaligned CPTAC3 b6fad7df-9bb5-4e21-ad27-c84ed6576386 1326c529e766009d7ccbf1421d9d3d42 {"aliquot_tag": "ALQ_b05023a1", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.miRNA-Seq.S44_L002_R1.A C3N-02333 HNSCC miRNA-Seq tissue_normal CPT0176790009 190228_UNC32-K00270_0151_AHYLY3BBXX_TATAAT_S44_L002_R1_001.unaln.bam 287960326 BAM S44_L002_R1 unaligned CPTAC3 69f904e0-1e26-4642-b28b-8b3aacd0c473 f1280585e7cd772e90520dd2f6defcc8 {"aliquot_tag": "ALQ_f609dc0", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.miRNA-Seq.T.hg38 C3N-02333 HNSCC miRNA-Seq tumor CPT0176770009 cf1391e9-db3f-45a3-8f76-73a2c2da72b7_mirnaseq_gdc_realn.bam 255778824 BAM harmonized CPTAC3 f37f0812-ad06-41aa-b071-68fab7be4641 107044c29253488193a05983c2d6eae5 {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.chimeric.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.chimeric.gdc_realn.bam 102767581 BAM chimeric harmonized CPTAC3 11ea64d7-7d34-4d4b-96c0-e98089e8962f 91bec6a90a5ffc553794e569340bbeaf {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.chimeric.gdc_realn.bam 140879390 BAM chimeric harmonized CPTAC3 8b0c7aa1-6812-4fbc-ad06-ca335bfae314 70cb840b03bd7bfee8f46431ec1f2e1a {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.chimeric.gdc_realn.bam 39193800 BAM chimeric harmonized CPTAC3 e8b0c58d-bf6b-42c3-80d7-d7f16b1f2930 03f6e271bb0749259e8c14a7e75851f6 {"aliquot_tag": "ALQ_d496bfd6", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.chimeric.gdc_realn.bam 326425162 BAM chimeric harmonized CPTAC3 578c099e-cff1-4032-8986-d52e2268305f 17d43e46fa0bc67a360e54de84301cbd {"aliquot_tag": "ALQ_3a98defa", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.genomic.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.genomic.gdc_realn.bam 11777210692 BAM genomic harmonized CPTAC3 e095e00a-69d0-439c-a001-3c96eb87c0d3 3d958f58f52ad8a32545892a6ff4ebe0 {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.genomic.gdc_realn.bam 6644124768 BAM genomic harmonized CPTAC3 7597ce88-0d07-4537-b7f8-b9b1ec89c886 efb6461111b687314588d3d51b6e0bca {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.genomic.gdc_realn.bam 7236103080 BAM genomic harmonized CPTAC3 ffa8cad3-712f-42b0-b319-151538a00a4a 36c9caa0f50b57c4301079724285d2ab {"aliquot_tag": "ALQ_d496bfd6", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.genomic.gdc_realn.bam 15089170055 BAM genomic harmonized CPTAC3 41303f6a-4940-4541-905f-c93f0fef4336 fdf8999dcc476ace7c462731a36069b9 {"aliquot_tag": "ALQ_3a98defa", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.S12_R1.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R1_001.fastq.gz 8777483586 FASTQ S12_R1 unaligned CPTAC3 5e113935-285d-4294-ad03-07a5bd40dc5c 59a4a2a3439eedcc4bcd66a108e44174 {"aliquot_tag": "ALQ_3a98defa", "sample": "S12", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.S12_R2.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R2_001.fastq.gz 9235596641 FASTQ S12_R2 unaligned CPTAC3 84efb119-d52a-4119-acca-4f55fd149f23 5eb40a282d9a04ad87db1f6096b95769 {"aliquot_tag": "ALQ_3a98defa", "sample": "S12", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.S17_R1.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R1_001.fastq.gz 3469816618 FASTQ S17_R1 unaligned CPTAC3 89feabec-3dac-4706-b306-46630d0e875c c99feb497486e5eada3226c18c8bb7ef {"aliquot_tag": "ALQ_d496bfd6", "sample": "S17", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.S17_R2.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R2_001.fastq.gz 3892229327 FASTQ S17_R2 unaligned CPTAC3 e47fc112-fb5c-44f7-8d3f-5e2294e19e2f b0b12ff9d6fb650398ee8ac5a0686001 {"aliquot_tag": "ALQ_d496bfd6", "sample": "S17", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.S23_L005_R1.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R1_001.fastq.gz 5243902991 FASTQ S23_L005_R1 unaligned CPTAC3 ad623de6-4bb8-4f72-b04f-e7f94da8d988 3086688f01a040f68b976432547533ec {"aliquot_tag": "ALQ_f609dc0", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.RNA-Seq.S23_L005_R2.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R2_001.fastq.gz 5971542451 FASTQ S23_L005_R2 unaligned CPTAC3 955ba682-5d4e-4d77-9609-41b8952797c1 16f05ae94f970927d65ea1f8106b1909 {"aliquot_tag": "ALQ_f609dc0", "sample": "S23", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.RNA-Seq.S5_L006_R1.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R1_001.fastq.gz 3144995123 FASTQ S5_L006_R1 unaligned CPTAC3 72892728-c7f4-42f1-8fe3-06f5fc6421df 705934d244245ad5f6954d6ea5dfb338 {"aliquot_tag": "ALQ_b05023a1", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.S5_L006_R2.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R2_001.fastq.gz 3342191721 FASTQ S5_L006_R2 unaligned CPTAC3 22f98aed-8f9d-4011-bbe4-2915a522dee4 f5584c9d4d15b614eb0f89feb73f8d46 {"aliquot_tag": "ALQ_b05023a1", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.transcriptome.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.transcriptome.gdc_realn.bam 17329756012 BAM transcriptome harmonized CPTAC3 244f500d-caf2-4a55-bb33-9a96527cb07a 6dc97ed17cb62941f6ae2a65bc3b7b0b {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.transcriptome.gdc_realn.bam 8210592953 BAM transcriptome harmonized CPTAC3 99976435-5846-4dba-82b7-34e82db57282 0012c721d94c375047f66be3cb45cbe7 {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.transcriptome.gdc_realn.bam 4410523443 BAM transcriptome harmonized CPTAC3 e27e6ec6-66c0-4b1b-8c56-27a44805b3f7 55aab5b5a176061b0b8cc1d2776ce97a {"aliquot_tag": "ALQ_d496bfd6", "gdc_sample_type": "Primary Tumor"} -C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.transcriptome.gdc_realn.bam 8807366883 BAM transcriptome harmonized CPTAC3 25542630-ce49-4eb2-af1a-1756804b9d67 cd6ba8852aee88979979b67daa1625b2 {"aliquot_tag": "ALQ_3a98defa", "gdc_sample_type": "Primary Tumor"} -C3N-02333.WGS.N C3N-02333 HNSCC WGS blood_normal CPT0176950002 CPT0176950002.WholeGenome.RP-1303.bam 69498639317 BAM aligned CPTAC3 53175b55-11f0-449c-84a3-3c75cdee3958 e6cbaf926e6695b69332eb700864a563 {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal"} -C3N-02333.WGS.N.hg38 C3N-02333 HNSCC WGS blood_normal CPT0176950002 3d3f0c39-ea2c-4909-9119-ebb58f071a66_wgs_gdc_realn.bam 101144654719 BAM harmonized CPTAC3 e55f1c27-beb4-4ef6-80f3-dbf092956a5a d4cb10a7a570c3f8d591a34b077b6e6d {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal"} -C3N-02333.WGS.T C3N-02333 HNSCC WGS tumor CPT0176770006 CPT0176770006.WholeGenome.RP-1303.bam 60643187335 BAM aligned CPTAC3 8eeb95d1-ebc9-417f-8ae5-789cf6eba881 11c0f06b520edf4c1d3fa0848ac45e8e {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor"} -C3N-02333.WGS.T.hg38 C3N-02333 HNSCC WGS tumor CPT0176770006 e319056e-8929-40c5-b74c-744c257ea260_wgs_gdc_realn.bam 88415779246 BAM harmonized CPTAC3 6d000ada-1862-45d9-9496-21229d6f10ad f25447fff868126f186944022d9f0483 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor"} -C3N-02333.WXS.A C3N-02333 HNSCC WXS tissue_normal CPT0176790006 CPT0176790006.WholeExome.RP-1303.bam 20353333508 BAM aligned CPTAC3 ac63a16b-21c1-4e42-ac6f-bafb5d16edd6 18c89256e27c3fcf23ab36c0b26a1ac9 {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.WXS.A.hg38 C3N-02333 HNSCC WXS tissue_normal CPT0176790006 75e3859e-7772-42d8-8c22-00e35bc4d843_wxs_gdc_realn.bam 28294895087 BAM harmonized CPTAC3 12c131e9-9fd7-4ab2-af33-48d2c05b52c4 2dbdaa760fb224b0ddc72b8af3d294b1 {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02333.WXS.N C3N-02333 HNSCC WXS blood_normal CPT0176950002 CPT0176950002.WholeExome.RP-1303.bam 21178450087 BAM aligned CPTAC3 88c975be-8a66-4022-a5d9-ec53594b1db3 54ff4697642cfb95d2f837fada34ec7e {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal"} -C3N-02333.WXS.N.hg38 C3N-02333 HNSCC WXS blood_normal CPT0176950002 3d3f0c39-ea2c-4909-9119-ebb58f071a66_wxs_gdc_realn.bam 28521597659 BAM harmonized CPTAC3 b27bdd4f-652e-4c26-9c10-92a9e51cedb9 fe29b1d82fb204b4961edcacff4616fc {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal"} -C3N-02333.WXS.T C3N-02333 HNSCC WXS tumor CPT0176770006 CPT0176770006.WholeExome.RP-1303.bam 18192271782 BAM aligned CPTAC3 a86dff36-1d9b-4fe0-a07e-da55f7064b7d 4437e8eae23bc19371662a004676aee6 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor"} -C3N-02333.WXS.T.hg38 C3N-02333 HNSCC WXS tumor CPT0176770006 e319056e-8929-40c5-b74c-744c257ea260_wxs_gdc_realn.bam 25718151290 BAM harmonized CPTAC3 3671fdbb-5149-4803-b53d-2ae48e4c31a8 7926bca3f1d5c150a59f9f30bf111c35 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor"} -C3N-02337.MethArray.Green.T C3N-02337 UCEC Methylation_Array tumor CPT0136280006 203561620043_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d07f723e-c79d-407a-baa6-44d99b672090 4903e1d30390e9d4f21f986d30024372 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor"} -C3N-02337.MethArray.Red.T C3N-02337 UCEC Methylation_Array tumor CPT0136280006 203561620043_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 ef4bfbd6-9245-4616-845d-a2bf4a1bda0e 6c9f95502de0952023869dd3ffb02975 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor"} -C3N-02337.miRNA-Seq.S33_L002_R1.T C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L002_R1_001.unaln.bam 288135954 BAM S33_L002_R1 unaligned CPTAC3 fded1b9b-b12e-41ff-8a2f-598a443d5692 047ebd1a2429f0cf1a3706a5ec64d858 {"aliquot_tag": "ALQ_e6872b39", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02337.miRNA-Seq.T.hg38 C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 d8d3cb65-05ab-42f7-bb37-247d39e36b46_mirnaseq_gdc_realn.bam 317575556 BAM harmonized CPTAC3 d0aa8602-d359-4302-a7fd-d94b89e3814f 2fbe35a4796246ca95342fe747f81124 {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.chimeric.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.chimeric.gdc_realn.bam 53132625 BAM chimeric harmonized CPTAC3 516c7930-a3b2-44b8-a24d-4070bc4a8fe3 8b63d0aa04f9d8c94638938154ca670c {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.chimeric.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.chimeric.gdc_realn.bam 225088005 BAM chimeric harmonized CPTAC3 24451364-d28d-453c-ad82-64c8a09efae9 25d832ebd85139cdd3470aa053c4b48f {"aliquot_tag": "ALQ_69b0680f", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.genomic.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.genomic.gdc_realn.bam 8730445667 BAM genomic harmonized CPTAC3 48c6f2a4-43d7-4554-b7d3-e4601cf86175 afc13f07909e3e484a3ebf414ec82e11 {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.genomic.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.genomic.gdc_realn.bam 9936473736 BAM genomic harmonized CPTAC3 6d3af1d2-b810-4a18-8a49-d2ad5cda5012 99e76046f25d1afe7271d29243777e4f {"aliquot_tag": "ALQ_69b0680f", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.S6_L002_R1.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R1_001.fastq.gz 4476475233 FASTQ S6_L002_R1 unaligned CPTAC3 935a992e-d60f-4c7e-9375-a7ebef77d4fd 5d6301f2bb690c07b63327b39866fa1c {"aliquot_tag": "ALQ_e6872b39", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.S6_L002_R2.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R2_001.fastq.gz 4656672771 FASTQ S6_L002_R2 unaligned CPTAC3 79a8ed7b-22ad-4bc6-bf48-ff8b25e8e214 84c221f686bafc609d5f30266833dd81 {"aliquot_tag": "ALQ_e6872b39", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.S88_R1.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R1_001.fastq.gz 5863422600 FASTQ S88_R1 unaligned CPTAC3 d76700f4-6e98-4388-adfe-130a7ce7458a b88e205225c0313fb711a58dedbdb73a {"aliquot_tag": "ALQ_69b0680f", "sample": "S88", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.S88_R2.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R2_001.fastq.gz 6108208077 FASTQ S88_R2 unaligned CPTAC3 0fdeb0b4-185d-43e9-a228-3cc881bf9967 7642bd0e2fa6460124deadca219d0cb3 {"aliquot_tag": "ALQ_69b0680f", "sample": "S88", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.transcriptome.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.transcriptome.gdc_realn.bam 7736180459 BAM transcriptome harmonized CPTAC3 903be311-5851-4588-947b-4eb071d45a88 3374e2066c77e7335563e37fe3974c5c {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor"} -C3N-02337.RNA-Seq.transcriptome.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.transcriptome.gdc_realn.bam 4531382449 BAM transcriptome harmonized CPTAC3 3ce8dfb8-7bea-4c37-81f6-630c42ba4021 90a8cf7d808aed38b051ff07225579d2 {"aliquot_tag": "ALQ_69b0680f", "gdc_sample_type": "Primary Tumor"} -C3N-02337.WGS.N C3N-02337 UCEC WGS blood_normal CPT0136390002 CPT0136390002.WholeGenome.RP-1303.bam 75885781858 BAM aligned CPTAC3 775129b4-c389-4718-a899-0aa07f12cd3f 679115b5ce0c315d835a235ab9d953c3 {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02337.WGS.N.hg38 C3N-02337 UCEC WGS blood_normal CPT0136390002 a9d85cf4-a820-49ff-8663-0d9279768a5f_wgs_gdc_realn.bam 111122777328 BAM harmonized CPTAC3 4f9d686b-75ee-4d95-9cb4-8adf3904769e 8ef2f70feeb73ccda53d4473393944d7 {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02337.WGS.T C3N-02337 UCEC WGS tumor CPT0136280006 CPT0136280006.WholeGenome.RP-1303.bam 60970978852 BAM aligned CPTAC3 ab5f89f0-3fd2-4f19-a3ac-98e1d6dbcef9 af40ec1fa73e4c0e4b86e6c4d550c64c {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor"} -C3N-02337.WGS.T.hg38 C3N-02337 UCEC WGS tumor CPT0136280006 f262d2e0-15d6-4d36-8df9-9932021a8268_wgs_gdc_realn.bam 88353967037 BAM harmonized CPTAC3 818bda3f-0514-4b8d-8805-ed25754e3eb8 7f5906dcb7e84efa57c16d0caf2c37c0 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor"} -C3N-02337.WXS.N C3N-02337 UCEC WXS blood_normal CPT0136390002 CPT0136390002.WholeExome.RP-1303.bam 25282376871 BAM aligned CPTAC3 b30a5f18-2539-4f5e-9fda-998405bf6c56 6f3f2ec10c9f90ce54dc3fd254545e45 {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02337.WXS.N.hg38 C3N-02337 UCEC WXS blood_normal CPT0136390002 a9d85cf4-a820-49ff-8663-0d9279768a5f_wxs_gdc_realn.bam 34810264033 BAM harmonized CPTAC3 77c8ecfb-5ca4-4fcf-af4b-d1afa1269926 09a4ad8ac0b211052ec526a0b34ef0fc {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02337.WXS.T C3N-02337 UCEC WXS tumor CPT0136280006 CPT0136280006.WholeExome.RP-1303.bam 26029040170 BAM aligned CPTAC3 afa7b0bd-9374-4a21-824b-3cfe017f0c80 ecda9d2b1f0a4dffb4ddba1f98259779 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor"} -C3N-02337.WXS.T.hg38 C3N-02337 UCEC WXS tumor CPT0136280006 f262d2e0-15d6-4d36-8df9-9932021a8268_wxs_gdc_realn.bam 35725807545 BAM harmonized CPTAC3 d8d16c0b-bfdd-422b-879a-9fd3e403f07b 9d151f2651d1983939fb7367538bc2a7 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor"} -C3N-02338.MethArray.Green.T C3N-02338 CCRCC Methylation_Array tumor CPT0136460009 203219670117_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ca784c77-cccc-4836-9f04-94f312e02509 114c48f1ce6fe8b1a4025d7061645832 {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor"} -C3N-02338.MethArray.Red.T C3N-02338 CCRCC Methylation_Array tumor CPT0136460009 203219670117_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 cd660857-8398-441c-bcc5-455ddeecaead 1b6618a3696d94f742d5dbeae18c4efe {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor"} -C3N-02338.miRNA-Seq.S37_L005_R1.T C3N-02338 CCRCC miRNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0176_AHYGLVBBXX_CGGAAT_S37_L005_R1_001.unaln.bam 222914173 BAM S37_L005_R1 unaligned CPTAC3 3ab32028-a93c-4cd9-bef0-3fba2671e2be 9a12c3d76eea0c17db7443741d1f8e55 {"aliquot_tag": "ALQ_1f516bd4", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02338.miRNA-Seq.T.hg38 C3N-02338 CCRCC miRNA-Seq tumor CPT0136460006 46b8c0aa-e140-4ff9-a6df-e9922f511aab_mirnaseq_gdc_realn.bam 239500396 BAM harmonized CPTAC3 538373ec-fb31-4776-9a5e-31e50e5f9902 91b097e5310b9d8c3e19731352f588f3 {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor"} -C3N-02338.RNA-Seq.chimeric.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.chimeric.gdc_realn.bam 28372164 BAM chimeric harmonized CPTAC3 ab65e951-39e7-47a4-b11e-110e036035fb 8bb67955ade19f6d0cb6e0fc9560b669 {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor"} -C3N-02338.RNA-Seq.genomic.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.genomic.gdc_realn.bam 7719111931 BAM genomic harmonized CPTAC3 8ba8cad6-81b3-4dc4-a80b-4c0047a6e358 d883ac04f29205f4fcb0de340ccbec36 {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor"} -C3N-02338.RNA-Seq.S19_L005_R1.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R1_001.fastq.gz 3666899684 FASTQ S19_L005_R1 unaligned CPTAC3 c1f53a89-c62f-4439-ac6c-2e44984b1967 3e75ca9d036e2c338369ffc7a0d23de0 {"aliquot_tag": "ALQ_1f516bd4", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02338.RNA-Seq.S19_L005_R2.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R2_001.fastq.gz 3754242208 FASTQ S19_L005_R2 unaligned CPTAC3 c6b8067a-67ef-42fb-ab92-7c368e2c8d6e 67fac81e4261f4b05b5c30bf55d54e76 {"aliquot_tag": "ALQ_1f516bd4", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02338.RNA-Seq.transcriptome.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.transcriptome.gdc_realn.bam 10402922388 BAM transcriptome harmonized CPTAC3 ffdd694b-5db3-4f71-80d2-e6cc4a2b6b3b c35b465c86e73fddbe7db30563f1651a {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor"} -C3N-02338.WGS.N C3N-02338 CCRCC WGS blood_normal CPT0136570002 CPT0136570002.WholeGenome.RP-1303.bam 79900866056 BAM aligned CPTAC3 12204de5-f10d-4431-856d-1ce4ab1d8ee3 b00ca4b359a9c33545c4542cd6267642 {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02338.WGS.N.hg38 C3N-02338 CCRCC WGS blood_normal CPT0136570002 da606039-6f4f-4d22-bb19-994cd41fddcd_wgs_gdc_realn.bam 118338303050 BAM harmonized CPTAC3 3d858ed2-3ad5-4890-b31e-51250b345ed3 7cf1f30ad17cf1dd91792e42a8a3b81c {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02338.WGS.T C3N-02338 CCRCC WGS tumor CPT0136460009 CPT0136460009.WholeGenome.RP-1303.bam 104553360085 BAM aligned CPTAC3 2fb14ff9-2978-4d24-8a9e-a9a41baf06bd 6213c84f012675b5a67debf3eafc7b6e {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor"} -C3N-02338.WGS.T.hg38 C3N-02338 CCRCC WGS tumor CPT0136460009 25efed2a-bca1-4367-803f-e800d2e509d6_wgs_gdc_realn.bam 150768515099 BAM harmonized CPTAC3 ea049fdf-f6ea-4ba2-8fb3-977bba4428a4 1f0681a555e62a861192432a7ea885f1 {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor"} -C3N-02338.WXS.N C3N-02338 CCRCC WXS blood_normal CPT0136570002 CPT0136570002.WholeExome.RP-1303.bam 21664655933 BAM aligned CPTAC3 505bfa8c-23a1-4d80-be0c-621e666099dd 70f0cb2f3d04d3b9d412e12522e4e3f2 {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02338.WXS.N.hg38 C3N-02338 CCRCC WXS blood_normal CPT0136570002 da606039-6f4f-4d22-bb19-994cd41fddcd_wxs_gdc_realn.bam 29844629658 BAM harmonized CPTAC3 e7aff9ae-bdba-4ab6-85c0-487b9a3e1624 3fbb7416f5ad53936f0c627ca17b1726 {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02338.WXS.T C3N-02338 CCRCC WXS tumor CPT0136460009 CPT0136460009.WholeExome.RP-1303.bam 28212029025 BAM aligned CPTAC3 1bd2ca71-063a-4b32-bda0-67f5a7fb42d3 da4b183a35399d1095864f66dc7bbd2e {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor"} -C3N-02338.WXS.T.hg38 C3N-02338 CCRCC WXS tumor CPT0136460009 25efed2a-bca1-4367-803f-e800d2e509d6_wxs_gdc_realn.bam 38471246659 BAM harmonized CPTAC3 1885f3a5-715f-4d75-8017-a9936297df04 30b4a127be0bb9dbea3750c06cc1405d {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor"} -C3N-02339.MethArray.Green.A C3N-02339 LSCC Methylation_Array tissue_normal CPT0136660006 203219670118_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 65f570f0-a3b7-47f6-be8b-0209e42d00b2 4a25e660b954b10a397b5e3fcd032fca {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.MethArray.Green.T C3N-02339 LSCC Methylation_Array tumor CPT0136640009 203219650042_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d261e7b7-9b94-4f0d-8319-1bcd8502a001 fb378066d9be1c3a0c582ff4fe5cf5e8 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor"} -C3N-02339.MethArray.Red.A C3N-02339 LSCC Methylation_Array tissue_normal CPT0136660006 203219670118_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 d9d407aa-71cb-4cc8-9430-c14ff59b3e6c 6d0f1353a7d9751ca05d3fb06b3cba4e {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.MethArray.Red.T C3N-02339 LSCC Methylation_Array tumor CPT0136640009 203219650042_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 3b6c9df3-1e9f-476e-9da6-78f4012f9ff0 bd849ede3e2f3ff7c83ce4b078e940a6 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor"} -C3N-02339.miRNA-Seq.A.hg38 C3N-02339 LSCC miRNA-Seq tissue_normal CPT0136660009 b83b430f-76fd-428d-90ea-470913f28f1d_mirnaseq_gdc_realn.bam 285849570 BAM harmonized CPTAC3 e7ce6a4f-fb2a-4a29-85eb-afb475140939 2c09964f6af690c99432f53df5653b94 {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.miRNA-Seq.S24_L002_R1.T C3N-02339 LSCC miRNA-Seq tumor CPT0136640013 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTGAT_S24_L002_R1_001.unaln.bam 237399533 BAM S24_L002_R1 unaligned CPTAC3 b2da884d-07c8-4662-ba79-65d266ca6cf2 8172364480a116d41f3147a3a08125ac {"aliquot_tag": "ALQ_41285c71", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02339.miRNA-Seq.S44_L002_R1.A C3N-02339 LSCC miRNA-Seq tissue_normal CPT0136660009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCATTC_S44_L002_R1_001.unaln.bam 260412349 BAM S44_L002_R1 unaligned CPTAC3 36d5457c-9dcb-4475-972b-f8422725dcc7 dc8db872941c66d62042361f85ba8469 {"aliquot_tag": "ALQ_c226d74e", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.miRNA-Seq.T.hg38 C3N-02339 LSCC miRNA-Seq tumor CPT0136640013 fc159fd8-d225-45bb-81d4-323e75e77156_mirnaseq_gdc_realn.bam 255836389 BAM harmonized CPTAC3 fef2cc8a-8359-4452-958c-671717a38787 6328420f0c12564bc88bc7ef2e927545 {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor"} -C3N-02339.RNA-Seq.chimeric.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.chimeric.gdc_realn.bam 30363160 BAM chimeric harmonized CPTAC3 df23cbb5-0e8f-4990-b1d0-4ac71c4f67df ed936d801665197acd68e8dd3524e4f8 {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.RNA-Seq.chimeric.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.chimeric.gdc_realn.bam 20302205 BAM chimeric harmonized CPTAC3 e30e3725-ed78-4143-8f01-f173e81b354b 8f49afcfbfc4731635261095cc71c6ba {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor"} -C3N-02339.RNA-Seq.genomic.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.genomic.gdc_realn.bam 8091103107 BAM genomic harmonized CPTAC3 85b39859-53d5-432e-8de3-6414ba9a8c2d 19b89bac003d271e572f0a8172c6c7c1 {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.RNA-Seq.genomic.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.genomic.gdc_realn.bam 8098789573 BAM genomic harmonized CPTAC3 60921e80-aff2-42e4-a08e-cd21d63f97bf ade0b4534f4b94dfda2326e1296b8f2a {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor"} -C3N-02339.RNA-Seq.S5_L008_R1.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3654425055 FASTQ S5_L008_R1 unaligned CPTAC3 085194c0-53be-43de-9f7b-6d3fd07c01b0 2f2b5ecbff032014315c15e1b05dfdbe {"aliquot_tag": "ALQ_c226d74e", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.RNA-Seq.S5_L008_R2.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3797002321 FASTQ S5_L008_R2 unaligned CPTAC3 58917e34-8967-443d-9641-6ea88154f9cb 83bb40da7d62fc557458b667081583ce {"aliquot_tag": "ALQ_c226d74e", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.RNA-Seq.S9_L003_R1.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3354523366 FASTQ S9_L003_R1 unaligned CPTAC3 5e588c16-67a3-4ac9-b85f-691be4bc581d a9ebdb16b7c3affe8d3d0ffb63d5ff44 {"aliquot_tag": "ALQ_41285c71", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02339.RNA-Seq.S9_L003_R2.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R2_001.fastq.gz 3455484024 FASTQ S9_L003_R2 unaligned CPTAC3 14f12e3e-32fa-48db-b3c9-e3127ffc2ba2 86035e53d20fb89d08ecb46bd0d2c2f9 {"aliquot_tag": "ALQ_41285c71", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02339.RNA-Seq.transcriptome.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.transcriptome.gdc_realn.bam 9304743474 BAM transcriptome harmonized CPTAC3 9d54baf0-fa01-43ad-b803-236591c1d0cb 5edc6da0104abac0b234710e5c488b4b {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.RNA-Seq.transcriptome.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.transcriptome.gdc_realn.bam 9553570576 BAM transcriptome harmonized CPTAC3 359c0391-a5e0-40c5-9c37-d7b6c50b2688 14e89fc636ce4828fbfc4a527881547c {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor"} -C3N-02339.WGS.A C3N-02339 LSCC WGS tissue_normal CPT0136660006 CPT0136660006.WholeGenome.RP-1303.bam 61360540853 BAM aligned CPTAC3 41658b62-ed56-40af-bc0d-7b268ba8b4e0 d13ac77344120047de38c9b9844cd6aa {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.WGS.A.hg38 C3N-02339 LSCC WGS tissue_normal CPT0136660006 d99afba5-4370-4faf-a2ed-6a8739dfd22f_wgs_gdc_realn.bam 88503423270 BAM harmonized CPTAC3 2b69e82b-fe1c-4997-bc1c-d61e2c7a4fbd ab81ca05835cc41261d775418e4b1b38 {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.WGS.N C3N-02339 LSCC WGS blood_normal CPT0136750002 CPT0136750002.WholeGenome.RP-1303.bam 69124015680 BAM aligned CPTAC3 48615ca0-b2a1-42b2-a505-a0a5da2fbfba cee62749d6b9b3d4d8df32f97665d31f {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02339.WGS.N.hg38 C3N-02339 LSCC WGS blood_normal CPT0136750002 53109f4a-593a-4191-92b6-a188273d4470_wgs_gdc_realn.bam 98788562322 BAM harmonized CPTAC3 a19f353c-2b13-4f53-b62a-6c7c11516a13 c090674b3880954353dda91bb7e21376 {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02339.WGS.T C3N-02339 LSCC WGS tumor CPT0136640009 CPT0136640009.WholeGenome.RP-1303.bam 80088162756 BAM aligned CPTAC3 f3819237-c041-4585-b015-f0a7bdc3d834 42809585accf42c7ebb267d26be028c6 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor"} -C3N-02339.WGS.T.hg38 C3N-02339 LSCC WGS tumor CPT0136640009 dd35d5e7-e2bd-4497-89a1-f7f48740de73_wgs_gdc_realn.bam 117259664944 BAM harmonized CPTAC3 d27f76b7-9654-4592-ab83-7af0e18da134 5aa77fe7ba0ca3c88bf32483dde0d044 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor"} -C3N-02339.WXS.A C3N-02339 LSCC WXS tissue_normal CPT0136660006 CPT0136660006.WholeExome.RP-1303.bam 27920603666 BAM aligned CPTAC3 1e5e95e2-998a-4d18-a7ca-b98784611cc8 6773249277bc3bb3c369b47f8eb03203 {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.WXS.A.hg38 C3N-02339 LSCC WXS tissue_normal CPT0136660006 d99afba5-4370-4faf-a2ed-6a8739dfd22f_wxs_gdc_realn.bam 38537906426 BAM harmonized CPTAC3 e0491974-755e-46cc-9c4c-2ba9000c0c18 5442f72a4a74ca77bd3817e74b934cdb {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02339.WXS.N C3N-02339 LSCC WXS blood_normal CPT0136750002 CPT0136750002.WholeExome.RP-1303.bam 24816921906 BAM aligned CPTAC3 7cc27769-62c0-4bd4-a5d7-71f79ad7c3c7 dbaa937177b244ba4bd8c3cdf1926531 {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02339.WXS.N.hg38 C3N-02339 LSCC WXS blood_normal CPT0136750002 53109f4a-593a-4191-92b6-a188273d4470_wxs_gdc_realn.bam 34737318540 BAM harmonized CPTAC3 d1fc6600-5eae-4271-8f35-768cc945d06e 90bb3eaf12b2eda29c40905e6f079da0 {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02339.WXS.T C3N-02339 LSCC WXS tumor CPT0136640009 CPT0136640009.WholeExome.RP-1303.bam 23872684402 BAM aligned CPTAC3 7facdaa4-93ef-49fa-83b9-5813705206d6 e36904a8ed3540a114d7273c9defb346 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor"} -C3N-02339.WXS.T.hg38 C3N-02339 LSCC WXS tumor CPT0136640009 dd35d5e7-e2bd-4497-89a1-f7f48740de73_wxs_gdc_realn.bam 33317060282 BAM harmonized CPTAC3 7dd5b1a7-554e-4011-b023-5485a5135ee0 c4647081be66d2ae17ac8a040c36e795 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor"} -C3N-02372.MethArray.Green.T C3N-02372 UCEC Methylation_Array tumor CPT0137140011 203561450102_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 d190171c-8b6a-402d-ba3a-49c4ce7b7147 0ba3f25eee84d1eb4780b35f948c1598 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor"} -C3N-02372.MethArray.Red.T C3N-02372 UCEC Methylation_Array tumor CPT0137140011 203561450102_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 e0efc784-fd53-451f-93cd-7e6e2d104602 a4601407c1e47ba14e9e58e992b092be {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor"} -C3N-02372.miRNA-Seq.S40_L004_R1.T C3N-02372 UCEC miRNA-Seq tumor CPT0137140018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTCAGA_S40_L004_R1_001.unaln.bam 250876986 BAM S40_L004_R1 unaligned CPTAC3 3de97036-a852-4fb6-88f8-40b255875090 96b0751292822e10e21fa7589ce35199 {"aliquot_tag": "ALQ_6d88bef5", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02372.miRNA-Seq.T.hg38 C3N-02372 UCEC miRNA-Seq tumor CPT0137140018 d8fe948e-f60f-46a2-a2da-f7f9eb94cdf6_mirnaseq_gdc_realn.bam 286912787 BAM harmonized CPTAC3 084f09f8-8f3a-4950-a490-e0eeb2e7d329 78028f9cb7ea9deff48282f9c9a4c97b {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.chimeric.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.chimeric.gdc_realn.bam 43779997 BAM chimeric harmonized CPTAC3 889fe4e0-75aa-4665-b1f8-a91c0a9e1a0c 6fc2bb8150bed02967b16763f66d1806 {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.chimeric.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.chimeric.gdc_realn.bam 187106011 BAM chimeric harmonized CPTAC3 2915019b-0061-49c8-8d05-e7ca7c598679 e32f49e16f9d0adac8a7519695e5e26c {"aliquot_tag": "ALQ_c8bfda11", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.genomic.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.genomic.gdc_realn.bam 9397145679 BAM genomic harmonized CPTAC3 17df60ca-9915-4c4e-88ea-c9ead2f0c800 6705f95c6f802b0c1fe84813cf13e12a {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.genomic.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.genomic.gdc_realn.bam 9399482126 BAM genomic harmonized CPTAC3 e695266e-3d5c-40a2-b622-c9b6f9a3876c 53db58ae0d168e6fb5f085fd3faa0754 {"aliquot_tag": "ALQ_c8bfda11", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.S4_L001_R1.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R1_001.fastq.gz 4203360368 FASTQ S4_L001_R1 unaligned CPTAC3 3751fab9-a9a6-4244-b11a-4b5ef741449c 418027aa4a8e03a01d02e07b9357e1aa {"aliquot_tag": "ALQ_6d88bef5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.S4_L001_R2.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R2_001.fastq.gz 4921461291 FASTQ S4_L001_R2 unaligned CPTAC3 d7bd6052-7dc7-4b81-8df5-4e0b455c2f11 4b008f83fb2adedb2ebc73c5f4e32a14 {"aliquot_tag": "ALQ_6d88bef5", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.S71_R1.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R1_001.fastq.gz 5767955157 FASTQ S71_R1 unaligned CPTAC3 ddf2ac99-8b99-47ba-8e8a-e4ef4387f7f0 7ef4aca9786631caec5e3e854b0165d4 {"aliquot_tag": "ALQ_c8bfda11", "sample": "S71", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.S71_R2.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R2_001.fastq.gz 6051316002 FASTQ S71_R2 unaligned CPTAC3 bfd2c27c-8e33-484a-b097-b02f237d85e5 72f179a5c8020b96764fc258709cc468 {"aliquot_tag": "ALQ_c8bfda11", "sample": "S71", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.transcriptome.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.transcriptome.gdc_realn.bam 10475640335 BAM transcriptome harmonized CPTAC3 7e2eed04-0dc2-4059-9edf-40c38836753a a58aaf58fafd93c6bc578cdae199d36d {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor"} -C3N-02372.RNA-Seq.transcriptome.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.transcriptome.gdc_realn.bam 7152718012 BAM transcriptome harmonized CPTAC3 0d3206d9-3650-4905-ab8f-0da7fa1faa4c bd39cf203167d0fbb5a17518a38c3546 {"aliquot_tag": "ALQ_c8bfda11", "gdc_sample_type": "Primary Tumor"} -C3N-02372.WGS.N C3N-02372 UCEC WGS blood_normal CPT0137260002 CPT0137260002.WholeGenome.RP-1303.bam 71370609558 BAM aligned CPTAC3 0f256c42-f149-44d4-986d-45e084a1ae89 029c3b9c967637073997a611e8de09c4 {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02372.WGS.N.hg38 C3N-02372 UCEC WGS blood_normal CPT0137260002 081a4e84-b6f6-4f0b-b704-d354949b4730_wgs_gdc_realn.bam 103395445838 BAM harmonized CPTAC3 dc554ad1-c4ea-4b23-9a85-02ac88c77398 eb8cd01be3ef43e4069a9353d3f1292f {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02372.WGS.T C3N-02372 UCEC WGS tumor CPT0137140011 CPT0137140011.WholeGenome.RP-1303.bam 91188488328 BAM aligned CPTAC3 d5b34a42-6bce-46c8-aaf0-b86ace2f5333 1c6bf5c15316d38116b744695b155e92 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor"} -C3N-02372.WGS.T.hg38 C3N-02372 UCEC WGS tumor CPT0137140011 e3518070-0733-4f7e-b857-3bb3d89a8041_wgs_gdc_realn.bam 130851163214 BAM harmonized CPTAC3 49d1cacd-a3c9-42d7-b1d1-7c01ca5dabc0 99f571f55c52b597e7018e7d5fce5bb9 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor"} -C3N-02372.WXS.N C3N-02372 UCEC WXS blood_normal CPT0137260002 CPT0137260002.WholeExome.RP-1303.bam 24071547733 BAM aligned CPTAC3 f596eb95-32a4-4d9c-aa90-6d45e8b2afac a6c8efb04254195035714c4b0148fe8c {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02372.WXS.N.hg38 C3N-02372 UCEC WXS blood_normal CPT0137260002 081a4e84-b6f6-4f0b-b704-d354949b4730_wxs_gdc_realn.bam 32772113930 BAM harmonized CPTAC3 4bcc4a59-d8f7-48ed-9e34-7fc5150895a4 95577e7b2931c44934780ecfcef611fd {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal"} -C3N-02372.WXS.T C3N-02372 UCEC WXS tumor CPT0137140011 CPT0137140011.WholeExome.RP-1303.bam 21927969322 BAM aligned CPTAC3 f515b7de-1bc2-457b-bfd6-9a433d078a17 af8b423249b864ceea0360d437a71b18 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor"} -C3N-02372.WXS.T.hg38 C3N-02372 UCEC WXS tumor CPT0137140011 e3518070-0733-4f7e-b857-3bb3d89a8041_wxs_gdc_realn.bam 31108072202 BAM harmonized CPTAC3 8f994400-ef0d-491e-8f37-37240e866bde cff120c3f499ea1f65192a54475285ea {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor"} -C3N-02374.MethArray.Green.A C3N-02374 LSCC Methylation_Array tissue_normal CPT0146400006 203219720176_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 74df72cf-abd8-4efd-af13-d216704cccd1 fc90754005b9c1a9bd6ea0d7b02169ad {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.MethArray.Green.T C3N-02374 LSCC Methylation_Array tumor CPT0146380010 203219760081_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1bac1a43-122f-4377-8140-9f50f111d8b2 00d30d033aff718aeb22e4e59827a62f {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor"} -C3N-02374.MethArray.Red.A C3N-02374 LSCC Methylation_Array tissue_normal CPT0146400006 203219720176_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 c7777fc9-ae90-45fc-8cea-1363ae2281d2 d03db61de8de70d652c557c9fb791362 {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.MethArray.Red.T C3N-02374 LSCC Methylation_Array tumor CPT0146380010 203219760081_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 930a2ac7-f2ae-49b2-ac78-3d0544619893 6e7b0dc6ddafa7abfe67cf10e0e8a664 {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor"} -C3N-02374.miRNA-Seq.A.hg38 C3N-02374 LSCC miRNA-Seq tissue_normal CPT0146400009 66883198-5e0f-48e0-b87f-7a49a2177a5f_mirnaseq_gdc_realn.bam 226116265 BAM harmonized CPTAC3 7088a176-caf0-4c8e-8895-46a840b1fcee 5df6d8565177d8211920f8324b1ebca9 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.miRNA-Seq.S20_L001_R1.T C3N-02374 LSCC miRNA-Seq tumor CPT0146380007 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGGCC_S20_L001_R1_001.unaln.bam 213962477 BAM S20_L001_R1 unaligned CPTAC3 05fe64cc-ca7f-4c40-a152-57b69334ddec a7705e5b45123bb6ce68af006cfe3090 {"aliquot_tag": "ALQ_c0a6dc82", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02374.miRNA-Seq.S32_L002_R1.A C3N-02374 LSCC miRNA-Seq tissue_normal CPT0146400009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGGCG_S32_L002_R1_001.unaln.bam 203313204 BAM S32_L002_R1 unaligned CPTAC3 16f54b7c-714f-406e-a174-18011b4f3872 f8604196d49f12a77814136fdbb0b3d5 {"aliquot_tag": "ALQ_a6b8afc", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.miRNA-Seq.T.hg38 C3N-02374 LSCC miRNA-Seq tumor CPT0146380007 25dcf1a0-f5c6-45f3-b774-7fe9ff95b65c_mirnaseq_gdc_realn.bam 246248803 BAM harmonized CPTAC3 4f927a2c-e35b-43d5-a112-4e281a1b396a 25d257e741b23b6a69484825d9b937ed {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor"} -C3N-02374.RNA-Seq.chimeric.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.chimeric.gdc_realn.bam 26299032 BAM chimeric harmonized CPTAC3 de85c4e5-1913-45c5-a79b-7cfa2c1e0568 28698e5f9157102ff61586cf8b4f90e9 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.RNA-Seq.chimeric.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.chimeric.gdc_realn.bam 17449109 BAM chimeric harmonized CPTAC3 8cb83148-175e-483e-9bc5-1ab9a6cb61db ef792bbb57db2408d6839b6eb01cf715 {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor"} -C3N-02374.RNA-Seq.genomic.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.genomic.gdc_realn.bam 7694840309 BAM genomic harmonized CPTAC3 602a1756-ea03-474f-960b-7dd3a582415c ee17a83aa72523e4a11d6bb0673b7705 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.RNA-Seq.genomic.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.genomic.gdc_realn.bam 6542059473 BAM genomic harmonized CPTAC3 b493c152-9fdf-4ff7-87c7-546db273077b 90933f18ce798731684a2df8dcb8b79d {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor"} -C3N-02374.RNA-Seq.S19_L005_R1.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3462101571 FASTQ S19_L005_R1 unaligned CPTAC3 a627c7dd-6641-4525-b9ab-9eb41bd0430c b6d976b06392bd404ac3598ea3a79f6c {"aliquot_tag": "ALQ_a6b8afc", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.RNA-Seq.S19_L005_R2.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3624979527 FASTQ S19_L005_R2 unaligned CPTAC3 930774a1-6b67-4e6c-a11f-d6065ffa6d94 bd1d861413686c6627650395de905e19 {"aliquot_tag": "ALQ_a6b8afc", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.RNA-Seq.S4_L001_R1.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 2744161249 FASTQ S4_L001_R1 unaligned CPTAC3 d4f2b044-07e4-40e4-bece-b1b724a8eb73 e3651f8333901c9e9a03a512cc468c2c {"aliquot_tag": "ALQ_c0a6dc82", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02374.RNA-Seq.S4_L001_R2.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 2942859559 FASTQ S4_L001_R2 unaligned CPTAC3 bda29cc6-f418-4288-9d26-5aab3892b4df 283cfdd925550c28a4054ccf7114ff94 {"aliquot_tag": "ALQ_c0a6dc82", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02374.RNA-Seq.transcriptome.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.transcriptome.gdc_realn.bam 9018643377 BAM transcriptome harmonized CPTAC3 12139c43-8818-4296-af56-63b818e84a49 36f1da52eadd04281a32e5654e7d18c0 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.RNA-Seq.transcriptome.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.transcriptome.gdc_realn.bam 8458341995 BAM transcriptome harmonized CPTAC3 8b9125b3-752f-4a71-b0ca-204f0dd71985 e82b31f1e990e92884fd26adb2f6ba2b {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor"} -C3N-02374.WGS.A C3N-02374 LSCC WGS tissue_normal CPT0146400006 CPT0146400006.WholeGenome.RP-1303.bam 60953607452 BAM aligned CPTAC3 316ec992-18bc-4aff-b20f-a8f65e085658 9b32995a8497bec7c7b84935f69bddd6 {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.WGS.A.hg38 C3N-02374 LSCC WGS tissue_normal CPT0146400006 c63f8b1c-3190-4d68-a36c-d18296220db4_wgs_gdc_realn.bam 89932505162 BAM harmonized CPTAC3 2b83dc75-f927-4f9f-ab0f-8d6179e81432 c45091cfbc7067d351727e27d42c2d96 {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.WGS.N C3N-02374 LSCC WGS blood_normal CPT0146410002 CPT0146410002.WholeGenome.RP-1303.bam 58166987291 BAM aligned CPTAC3 1e99e8b3-d8d2-4f8a-9a6a-9ce391887418 9d8b84179fb35b0828db0fdb9a785103 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02374.WGS.N.hg38 C3N-02374 LSCC WGS blood_normal CPT0146410002 0db610c9-ca9b-4565-a6ba-e6d8103918ad_wgs_gdc_realn.bam 84947702213 BAM harmonized CPTAC3 4e16cc46-ac3e-4426-852c-a2229b92e01f 8f2546d310f67cd384b7009b73d52fe1 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02374.WGS.T C3N-02374 LSCC WGS tumor CPT0146380010 CPT0146380010.WholeGenome.RP-1303.bam 56815015764 BAM aligned CPTAC3 571f66de-01e0-4372-88b8-8a570d3ee5c6 1046580ab755549f1799e3181f7f6b4b {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor"} -C3N-02374.WGS.T.hg38 C3N-02374 LSCC WGS tumor CPT0146380010 55efde83-7f58-4056-817a-d992871a83f6_wgs_gdc_realn.bam 82973215891 BAM harmonized CPTAC3 c14ac1e7-9708-42ab-88d5-6168a0e43aeb e0b8998a2375f0fc2b26f4dcae9cb0f2 {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor"} -C3N-02374.WXS.A C3N-02374 LSCC WXS tissue_normal CPT0146400006 CPT0146400006.WholeExome.RP-1303.bam 24768142273 BAM aligned CPTAC3 41594cd0-bc5b-4cc4-9367-f6d3e4badb56 ccef5cf76444133afae2464a932e426e {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.WXS.A.hg38 C3N-02374 LSCC WXS tissue_normal CPT0146400006 c63f8b1c-3190-4d68-a36c-d18296220db4_wxs_gdc_realn.bam 34475659228 BAM harmonized CPTAC3 5b4a7ae5-8d17-44ef-a667-80adbd070b32 d6d0f9bff3b4c6be65970fcc2200dc2a {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02374.WXS.N C3N-02374 LSCC WXS blood_normal CPT0146410002 CPT0146410002.WholeExome.RP-1303.bam 27373948445 BAM aligned CPTAC3 376aefcd-1fe4-4ec6-afbd-7fc7c0e06c01 48c1b563cc51d877f953eaaa43c6e761 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02374.WXS.N.hg38 C3N-02374 LSCC WXS blood_normal CPT0146410002 0db610c9-ca9b-4565-a6ba-e6d8103918ad_wxs_gdc_realn.bam 37814947685 BAM harmonized CPTAC3 b0143e55-1562-4f7c-ab33-340309115bf0 5db9d16e5ca30fdebf78136895d63f14 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02374.WXS.T C3N-02374 LSCC WXS tumor CPT0146380010 CPT0146380010.WholeExome.RP-1303.bam 27177843084 BAM aligned CPTAC3 5db5aaf6-e24c-40f7-8d3e-945eae843e26 e52a7ce47403e5adc528f23d0d772c26 {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor"} -C3N-02374.WXS.T.hg38 C3N-02374 LSCC WXS tumor CPT0146380010 55efde83-7f58-4056-817a-d992871a83f6_wxs_gdc_realn.bam 37861647979 BAM harmonized CPTAC3 7464ce2c-3c1e-489c-9725-276850d2a25c 6e998db82b4ddbfe049a882297a421ea {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor"} -C3N-02375.MethArray.Green.A C3N-02375 LSCC Methylation_Array tissue_normal CPT0146500006 203220070084_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7433e924-3654-4344-a6a2-33d831df0e8c aef56b805fb094298be7aa404fb4b693 {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.MethArray.Green.T C3N-02375 LSCC Methylation_Array tumor CPT0146480010 203219650176_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 e186fb4c-1f53-4b24-87ee-9af77369b103 15dbfe3c0e4921d2440959d80329193a {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor"} -C3N-02375.MethArray.Red.A C3N-02375 LSCC Methylation_Array tissue_normal CPT0146500006 203220070084_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 dfbc44d6-8730-4933-9e86-80c4719b45f7 d195036a94565821291f79bba85ce19e {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.MethArray.Red.T C3N-02375 LSCC Methylation_Array tumor CPT0146480010 203219650176_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 09595a37-8b2d-46c7-86df-ddc64825edfb c1de5088602c5f7bbe282346ff2a5a18 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor"} -C3N-02375.miRNA-Seq.A.hg38 C3N-02375 LSCC miRNA-Seq tissue_normal CPT0146500009 5a05b9f0-a527-42ff-adad-82196ef3f161_mirnaseq_gdc_realn.bam 283776980 BAM harmonized CPTAC3 0a51eeef-ff6b-44de-9ad0-2f89965cd23e f4c134a02ca04405be17367dfb769edf {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.miRNA-Seq.S21_L001_R1.T C3N-02375 LSCC miRNA-Seq tumor CPT0146480007 181219_UNC31-K00269_0173_BHYGJJBBXX_GTTTCG_S21_L001_R1_001.unaln.bam 171547783 BAM S21_L001_R1 unaligned CPTAC3 5451c0db-a2e9-4fdd-95e9-712f6d4e02bf a4cfe944bf6f87e00960a4cfb531f911 {"aliquot_tag": "ALQ_dda3ec3a", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02375.miRNA-Seq.S33_L002_R1.A C3N-02375 LSCC miRNA-Seq tissue_normal CPT0146500009 181219_UNC31-K00269_0173_BHYGJJBBXX_CATGGC_S33_L002_R1_001.unaln.bam 251860614 BAM S33_L002_R1 unaligned CPTAC3 40ddd37f-9a4d-4992-9815-1eb0cd092b35 b92ac71a8d0ed5492cb02eaa9071d3ac {"aliquot_tag": "ALQ_c1375959", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.miRNA-Seq.T.hg38 C3N-02375 LSCC miRNA-Seq tumor CPT0146480007 2055d83a-87e0-41fa-bfe2-1992c0317442_mirnaseq_gdc_realn.bam 197076046 BAM harmonized CPTAC3 0464945e-bd9d-4d5e-8f73-82b4b8b866d3 863b13c660ec57172ba0e04630d1b74b {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor"} -C3N-02375.RNA-Seq.chimeric.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.chimeric.gdc_realn.bam 30710775 BAM chimeric harmonized CPTAC3 1365d901-b147-4c5c-bbf3-295c3b4c94ac de989aff8a489c0c0dd69741656bc4ea {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.RNA-Seq.chimeric.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.chimeric.gdc_realn.bam 19130371 BAM chimeric harmonized CPTAC3 2be52fe0-5b14-489f-9c1e-aad2bdcc8edc fcee45d6dba454b947318d77c025a155 {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor"} -C3N-02375.RNA-Seq.genomic.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.genomic.gdc_realn.bam 8518494206 BAM genomic harmonized CPTAC3 0ea35eaa-726f-402b-a0aa-db599fd87ff6 3c513ff07d1c994a37ab564a4ba5f10e {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.RNA-Seq.genomic.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.genomic.gdc_realn.bam 6804558921 BAM genomic harmonized CPTAC3 daca94c2-f76a-4d48-9998-d5e98287176f 1a6a19edc4d8d0d1077b882964da1110 {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor"} -C3N-02375.RNA-Seq.S18_L005_R1.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3968971217 FASTQ S18_L005_R1 unaligned CPTAC3 297e37ea-46c3-43d0-a7de-609431e4bde1 332fb581796600e8f94b39912ab32f15 {"aliquot_tag": "ALQ_c1375959", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.RNA-Seq.S18_L005_R2.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4154746369 FASTQ S18_L005_R2 unaligned CPTAC3 51f3310d-530d-4684-8697-4e3084bb3d07 a0f4b18628ae0147cb4e014af04232ad {"aliquot_tag": "ALQ_c1375959", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.RNA-Seq.S5_L002_R1.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3142352798 FASTQ S5_L002_R1 unaligned CPTAC3 e21ad989-8121-4808-93c6-d07012c3d218 32f2ad1111473c5c277e356a1da2bf81 {"aliquot_tag": "ALQ_dda3ec3a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02375.RNA-Seq.S5_L002_R2.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3389401947 FASTQ S5_L002_R2 unaligned CPTAC3 32a83be0-97a7-4e68-a2a8-8a7b722e4697 b203327ad983433885e5612a203b81cf {"aliquot_tag": "ALQ_dda3ec3a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02375.RNA-Seq.transcriptome.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.transcriptome.gdc_realn.bam 10420796459 BAM transcriptome harmonized CPTAC3 b35756b7-66a5-4a61-bc82-bf60c5e91239 5b17b23398245f0ee078aab0a9a15af8 {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.RNA-Seq.transcriptome.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.transcriptome.gdc_realn.bam 9996164720 BAM transcriptome harmonized CPTAC3 eda6489e-62e1-43c2-8045-7c3faa62d984 c18b61f13e49cdf6a374db8d856bc5b3 {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor"} -C3N-02375.WGS.A C3N-02375 LSCC WGS tissue_normal CPT0146500006 CPT0146500006.WholeGenome.RP-1303.bam 58873288250 BAM aligned CPTAC3 24db5348-9cbc-418f-81c1-ead012741303 6d1c6ed27a56676ec51946e424ed336a {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.WGS.A.hg38 C3N-02375 LSCC WGS tissue_normal CPT0146500006 d409515c-a3f0-420a-b761-869c131bf575_wgs_gdc_realn.bam 86498872025 BAM harmonized CPTAC3 e70c2a93-a5b9-46cc-8992-cf1d23cdc2be cec54e5cc6ad8b94e9d158ba804144a9 {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.WGS.N C3N-02375 LSCC WGS blood_normal CPT0146510002 CPT0146510002.WholeGenome.RP-1303.bam 71664809221 BAM aligned CPTAC3 362ce634-07f9-4ba4-a623-60a9e8f48afb 4eee54f924693aedf785734a1b4dde36 {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02375.WGS.N.hg38 C3N-02375 LSCC WGS blood_normal CPT0146510002 c17874dd-d150-43ac-9eb8-a6d73af712bc_wgs_gdc_realn.bam 105408582639 BAM harmonized CPTAC3 63d594ef-815a-4656-bf69-754be2faecce 065891e7634e2ccb3ee3ad27b21e204f {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02375.WGS.T C3N-02375 LSCC WGS tumor CPT0146480010 CPT0146480010.WholeGenome.RP-1303.bam 74428848707 BAM aligned CPTAC3 3094b38f-67a7-466f-9197-d54b696c067d 2df9c9d16a0ab6726cb4773a7bdbcfa4 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor"} -C3N-02375.WGS.T.hg38 C3N-02375 LSCC WGS tumor CPT0146480010 495a32a0-f447-400d-a8b5-893945087969_wgs_gdc_realn.bam 107431913597 BAM harmonized CPTAC3 a1901f1a-5c30-4b7d-bd51-19d3f74f0d1c f4219d321fd425d9b13438806fa40646 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor"} -C3N-02375.WXS.A C3N-02375 LSCC WXS tissue_normal CPT0146500006 CPT0146500006.WholeExome.RP-1303.bam 14774559340 BAM aligned CPTAC3 33c1e931-cecd-4b3b-b5bf-9e9eb004e51b b617f072f3b3e2d930e983fa9e7d51a8 {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.WXS.A.hg38 C3N-02375 LSCC WXS tissue_normal CPT0146500006 d409515c-a3f0-420a-b761-869c131bf575_wxs_gdc_realn.bam 20406148962 BAM harmonized CPTAC3 1a10521b-0be1-4192-8b16-b421132e1f45 d19dbff3f7b7f3baecc6b4114a9f4b1b {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02375.WXS.N C3N-02375 LSCC WXS blood_normal CPT0146510002 CPT0146510002.WholeExome.RP-1303.bam 22124022149 BAM aligned CPTAC3 5f9075f3-ce84-47de-af00-295c198fb1c2 b03bd3613942ebaae771bd6748c1724d {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02375.WXS.N.hg38 C3N-02375 LSCC WXS blood_normal CPT0146510002 c17874dd-d150-43ac-9eb8-a6d73af712bc_wxs_gdc_realn.bam 30706822180 BAM harmonized CPTAC3 a12cda8d-52da-4e45-8d77-de7f80632bae faff75ca830bacf6fd8e8136416cb9cb {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal"} -C3N-02375.WXS.T C3N-02375 LSCC WXS tumor CPT0146480010 CPT0146480010.WholeExome.RP-1303.bam 24863350292 BAM aligned CPTAC3 98e0932a-8321-42e4-b194-855cf8137a73 5aa17df4ba0e93fd2e4db387b6e277d4 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor"} -C3N-02375.WXS.T.hg38 C3N-02375 LSCC WXS tumor CPT0146480010 495a32a0-f447-400d-a8b5-893945087969_wxs_gdc_realn.bam 34126343746 BAM harmonized CPTAC3 41787f8c-4066-4cb7-9ff5-eced3341f523 808d4f7ea4f217f7d31787554a81dd30 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor"} -C3N-02379.MethArray.Green.A C3N-02379 LUAD Methylation_Array tissue_normal CPT0146600009 203219650098_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1ea21b72-04b3-4eac-8817-95844f0f3084 3752c2c6fd8973d3c85b9e3d53ec8dde {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.MethArray.Green.T C3N-02379 LUAD Methylation_Array tumor CPT0146580010 203028200023_R03C01_Grn.idat 13676232 IDAT Green NA CPTAC3 30f03b0c-c1f6-4bdd-8cbc-9f06c0805146 f580e1406e886ce1e24275866e64cb06 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor"} -C3N-02379.MethArray.Red.A C3N-02379 LUAD Methylation_Array tissue_normal CPT0146600009 203219650098_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 75178db8-fa1c-4bd8-b1fb-948e915cd2df 19381be80f2ccbb19f79334d6b3d5a5b {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.MethArray.Red.T C3N-02379 LUAD Methylation_Array tumor CPT0146580010 203028200023_R03C01_Red.idat 13676232 IDAT Red NA CPTAC3 e3131e04-b0b6-4451-b0a1-ad1793f371e4 8d0ed2c6509c5f2b4250c8a33d8a8e7a {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor"} -C3N-02379.miRNA-Seq.A.hg38 C3N-02379 LUAD miRNA-Seq tissue_normal CPT0146600006 b74017a9-d66f-48ed-ab3e-17d20adfd64e_mirnaseq_gdc_realn.bam 242228302 BAM harmonized CPTAC3 79b3827c-76bc-4cfa-aa8e-1c095416f5a5 512fbba07b327cbc12be1ae2fa48f9ff {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.miRNA-Seq.S10_L003_R1.T C3N-02379 LUAD miRNA-Seq tumor CPT0146580007 181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L003_R1_001.unaln.bam 229225643 BAM S10_L003_R1 unaligned CPTAC3 3967f5c4-c979-43f5-8a63-7da1133fa34e 9157a02e2385edbb15c8e155cf9691af {"aliquot_tag": "ALQ_16ff3f9f", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02379.miRNA-Seq.S24_L003_R1.A C3N-02379 LUAD miRNA-Seq tissue_normal CPT0146600006 181108_UNC31-K00269_0162_AH255GBBXY_TCGGCA_S24_L003_R1_001.unaln.bam 212190486 BAM S24_L003_R1 unaligned CPTAC3 509d8096-99df-4816-b307-139b17e8a5c1 24a29b966fbfcc7307075551d5fa9f49 {"aliquot_tag": "ALQ_d71c3666", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.miRNA-Seq.T.hg38 C3N-02379 LUAD miRNA-Seq tumor CPT0146580007 d2d0e91b-12ec-4dbe-8c1d-c419f630e615_mirnaseq_gdc_realn.bam 252121469 BAM harmonized CPTAC3 06932e2c-fa54-4e3d-991c-ebee02c0b491 1681a5a084457475cbdbe935d48c925b {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor"} -C3N-02379.RNA-Seq.chimeric.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.chimeric.gdc_realn.bam 47556607 BAM chimeric harmonized CPTAC3 ba3ee5a5-9804-4d7f-8585-cb4f684054d1 e8f9b116fe51c82a72b6a2857c7b94fc {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.RNA-Seq.chimeric.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.chimeric.gdc_realn.bam 55902629 BAM chimeric harmonized CPTAC3 26fe3009-12b5-4ac0-b6bf-56ee829fe79a 1f9844881fd6b07276bfd69372a39fbe {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor"} -C3N-02379.RNA-Seq.genomic.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.genomic.gdc_realn.bam 8438943813 BAM genomic harmonized CPTAC3 fd5efe14-7359-4f61-889c-9ac15869f9be 84282b5281bd2748de75c235429a109c {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.RNA-Seq.genomic.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.genomic.gdc_realn.bam 10008829484 BAM genomic harmonized CPTAC3 8631d872-5d34-403f-a5cc-77eb1f4cddc5 2da4389801cf217857c1d05017eb26b0 {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor"} -C3N-02379.RNA-Seq.S17_L005_R1.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3975417083 FASTQ S17_L005_R1 unaligned CPTAC3 4b819950-6a36-4118-a52a-12fe2b163bc6 6988ca1931ff4eb7e3064812ed07f35a {"aliquot_tag": "ALQ_d71c3666", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.RNA-Seq.S17_L005_R2.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 4193483753 FASTQ S17_L005_R2 unaligned CPTAC3 9230762d-5acf-4492-855b-fa786e9edfe9 a5578c1afc9e6c25ae315533c4bb29ef {"aliquot_tag": "ALQ_d71c3666", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.RNA-Seq.S5_L008_R1.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R1_001.fastq.gz 4587162470 FASTQ S5_L008_R1 unaligned CPTAC3 5288ad0d-7c3c-4d0d-b975-ecf62a09a09f ceb58aa4262a05ceb302f68e5ea7298e {"aliquot_tag": "ALQ_16ff3f9f", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02379.RNA-Seq.S5_L008_R2.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R2_001.fastq.gz 4984677667 FASTQ S5_L008_R2 unaligned CPTAC3 c5c7076f-a207-4abc-a1fb-3a7868d3dab7 d878c8d444a1634bc57c6b16df08af62 {"aliquot_tag": "ALQ_16ff3f9f", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02379.RNA-Seq.transcriptome.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.transcriptome.gdc_realn.bam 9358521541 BAM transcriptome harmonized CPTAC3 198b8f17-3f20-4aaa-ace2-4baed9f711d9 7fdf493f666fe08bf09486f97d04cdd8 {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.RNA-Seq.transcriptome.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.transcriptome.gdc_realn.bam 13123674276 BAM transcriptome harmonized CPTAC3 33a147f6-ac3c-416c-98dd-720fff245068 7b21fabd940d7558c0ee737e6e71ba6f {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor"} -C3N-02379.WGS.A C3N-02379 LUAD WGS tissue_normal CPT0146600009 CPT0146600009.WholeGenome.RP-1303.bam 60344229444 BAM aligned CPTAC3 5269fbeb-cf8c-44cd-a368-eb3835fc0ec9 68fc1253c72ae3777ceb4aea110c2225 {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.WGS.A.hg38 C3N-02379 LUAD WGS tissue_normal CPT0146600009 0581226d-c103-4250-875b-809c077595b7_wgs_gdc_realn.bam 89549929932 BAM harmonized CPTAC3 f6feed2b-0e98-4711-aa28-0e5d80a5885b 017078c6302ece06305ad5c42b429b72 {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.WGS.N C3N-02379 LUAD WGS blood_normal CPT0146610002 CPT0146610002.WholeGenome.RP-1303.bam 57953735057 BAM aligned CPTAC3 605686b5-44c3-451e-a1d5-4e6136aa7645 951ed044cf99c078e42d9308ad5fc424 {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02379.WGS.N.hg38 C3N-02379 LUAD WGS blood_normal CPT0146610002 65f832db-5d04-48a3-b292-b4554eadc912_wgs_gdc_realn.bam 84212898575 BAM harmonized CPTAC3 768b0208-edb7-42a2-a514-51490b939029 4a5b54bd089e47aeddea45a05e1a1b26 {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02379.WGS.T C3N-02379 LUAD WGS tumor CPT0146580010 CPT0146580010.WholeGenome.RP-1303.bam 62412784307 BAM aligned CPTAC3 fdf700fe-f799-4579-a0ec-fd0bfbe9d7d4 56fb86fd72221b34c16e8ca7c3ee3718 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor"} -C3N-02379.WGS.T.hg38 C3N-02379 LUAD WGS tumor CPT0146580010 41acd1fe-34cc-4b28-8c65-2604cbd849f6_wgs_gdc_realn.bam 91998469500 BAM harmonized CPTAC3 e48ec09d-b9ed-44ff-bc5f-2f35fedefeee 6229cc06dc0740623caa0a39b79675db {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor"} -C3N-02379.WXS.A C3N-02379 LUAD WXS tissue_normal CPT0146600009 CPT0146600009.WholeExome.RP-1303.bam 23943479921 BAM aligned CPTAC3 55b8d76c-bde9-497c-82b8-b5dfadbb6348 ed5c9600c5684970ea2863b67ed46b76 {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.WXS.A.hg38 C3N-02379 LUAD WXS tissue_normal CPT0146600009 0581226d-c103-4250-875b-809c077595b7_wxs_gdc_realn.bam 32714457542 BAM harmonized CPTAC3 05ca5873-ef73-4d1f-826c-6ab3609049f8 7ef46d188456fe458fa21f657dc662be {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02379.WXS.N C3N-02379 LUAD WXS blood_normal CPT0146610002 CPT0146610002.WholeExome.RP-1303.bam 24512467702 BAM aligned CPTAC3 f68d90cb-c58d-445a-9da6-a350213bc0f6 0e75df564625d7cdcb54461dc9ba79bd {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02379.WXS.N.hg38 C3N-02379 LUAD WXS blood_normal CPT0146610002 65f832db-5d04-48a3-b292-b4554eadc912_wxs_gdc_realn.bam 33604778149 BAM harmonized CPTAC3 e9b15b60-d348-4859-aa58-7a0ca91efc65 2d1a5d5a796bcfa5098de354c944d8d8 {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02379.WXS.T C3N-02379 LUAD WXS tumor CPT0146580010 CPT0146580010.WholeExome.RP-1303.bam 26004150764 BAM aligned CPTAC3 153ed475-0913-49f8-90da-1841cb05c5e5 e2f10724390bb77de42fcf96aa3c9455 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor"} -C3N-02379.WXS.T.hg38 C3N-02379 LUAD WXS tumor CPT0146580010 41acd1fe-34cc-4b28-8c65-2604cbd849f6_wxs_gdc_realn.bam 35139921952 BAM harmonized CPTAC3 baf146e2-0088-4cc6-80db-1e2e364d6800 d7e6f823bf1434faa29dbb2723750c40 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor"} -C3N-02380.MethArray.Green.A C3N-02380 LUAD Methylation_Array tissue_normal CPT0146700009 203219640102_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0178389c-532f-4090-a881-d6669e744ea2 523809672b76b0f6dbfdf2c6794b3655 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.MethArray.Green.T C3N-02380 LUAD Methylation_Array tumor CPT0146680010 203219640102_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3ece5160-a864-4d95-8340-c2bfeab238d0 958d451bcd310eac52d6097ac808542a {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor"} -C3N-02380.MethArray.Red.A C3N-02380 LUAD Methylation_Array tissue_normal CPT0146700009 203219640102_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 54c21910-7a6d-4f04-9685-1b6e0e83c56f 8fc76f7ef4d8e96edd5426e0f2bcf320 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.MethArray.Red.T C3N-02380 LUAD Methylation_Array tumor CPT0146680010 203219640102_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 38b6a66c-4bd6-4dbe-9c60-1eb1f6054154 3f3eb221a2cb36260ca0b89d8583ba3b {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor"} -C3N-02380.miRNA-Seq.A.hg38 C3N-02380 LUAD miRNA-Seq tissue_normal CPT0146700006 22de3820-beac-42fe-aa36-99c3a607c371_mirnaseq_gdc_realn.bam 228296094 BAM harmonized CPTAC3 2d4a6e59-233d-44c5-ab12-8d97f07c040a 66c7d341c98f8c1fb49100b6b02b96b2 {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.miRNA-Seq.S11_L003_R1.T C3N-02380 LUAD miRNA-Seq tumor CPT0146680007 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L003_R1_001.unaln.bam 224945153 BAM S11_L003_R1 unaligned CPTAC3 e8b5ff15-dfd0-444f-90a7-0d31ee5014c9 b8cd98324dfac42b49c09ccf2ecb36f2 {"aliquot_tag": "ALQ_906b4d31", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02380.miRNA-Seq.S25_L002_R1.A C3N-02380 LUAD miRNA-Seq tissue_normal CPT0146700006 181108_UNC31-K00269_0162_AH255GBBXY_ATCACG_S25_L002_R1_001.unaln.bam 202433919 BAM S25_L002_R1 unaligned CPTAC3 15709e7e-5f8a-439f-b997-83c54c1d3287 47890a72a251f136dab008ca0c318088 {"aliquot_tag": "ALQ_1c40e5c3", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.miRNA-Seq.T.hg38 C3N-02380 LUAD miRNA-Seq tumor CPT0146680007 cf91c2b0-399e-4113-8434-591d79734509_mirnaseq_gdc_realn.bam 245376478 BAM harmonized CPTAC3 946a7e98-33c1-4c8b-96d6-7c1e7a250fd4 78e71b03e14249dbfbbf2a41ae180756 {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor"} -C3N-02380.RNA-Seq.chimeric.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.chimeric.gdc_realn.bam 40430403 BAM chimeric harmonized CPTAC3 867885db-cf7f-4bc7-8202-baebe89753b5 1c2506b194db6de1297f6adcc622f419 {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.RNA-Seq.chimeric.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.chimeric.gdc_realn.bam 111940351 BAM chimeric harmonized CPTAC3 623ebf72-fbbf-4448-a045-62376c818b9e 8c68061941119f28da43d08acef50cbd {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor"} -C3N-02380.RNA-Seq.genomic.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.genomic.gdc_realn.bam 7434342914 BAM genomic harmonized CPTAC3 ec1240ee-9a7e-468b-9e6f-9095765f1b64 b5af2f6f50aa5d9e0f039d6b633f70bb {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.RNA-Seq.genomic.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.genomic.gdc_realn.bam 9661045949 BAM genomic harmonized CPTAC3 038184d8-71a9-4808-bdef-a177f3649d25 b6fcb5e78c151d87dc916c4401dac60c {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor"} -C3N-02380.RNA-Seq.S20_L005_R1.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3534442210 FASTQ S20_L005_R1 unaligned CPTAC3 88726cfe-6ed5-45a1-b154-26910cf7dd1a d2efe5adfbd17e59af421aacf803ecce {"aliquot_tag": "ALQ_1c40e5c3", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.RNA-Seq.S20_L005_R2.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R2_001.fastq.gz 3565209807 FASTQ S20_L005_R2 unaligned CPTAC3 c56bba94-989f-42f1-837b-27fbc10864cb b36fabc09e01845cd8758398be05c15a {"aliquot_tag": "ALQ_1c40e5c3", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.RNA-Seq.S6_L008_R1.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R1_001.fastq.gz 4001677751 FASTQ S6_L008_R1 unaligned CPTAC3 9e27348c-6ff2-4e76-9749-fb2cb7322136 15e91ae7fb43b331fe85d4e949ebb0dd {"aliquot_tag": "ALQ_906b4d31", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02380.RNA-Seq.S6_L008_R2.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R2_001.fastq.gz 4538250920 FASTQ S6_L008_R2 unaligned CPTAC3 31a19dfa-bc63-4f29-9768-1881ff09d7be 72004073d69a4a3319dff2b68deaa142 {"aliquot_tag": "ALQ_906b4d31", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02380.RNA-Seq.transcriptome.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.transcriptome.gdc_realn.bam 8503647780 BAM transcriptome harmonized CPTAC3 d496ed16-fae6-4806-8bab-c39dca323d15 37cad7d4f2a96bf085ff53183af7b1d9 {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.RNA-Seq.transcriptome.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.transcriptome.gdc_realn.bam 9609218443 BAM transcriptome harmonized CPTAC3 448fc971-cd71-4acf-8c63-94b21f5ed11b 5988b6cff045f97c058549f83c101347 {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor"} -C3N-02380.WGS.A C3N-02380 LUAD WGS tissue_normal CPT0146700009 CPT0146700009.WholeGenome.RP-1303.bam 56730058746 BAM aligned CPTAC3 06cda296-b181-439d-a8f9-043a1a64db0f d0089be448eda58b3e53fd53317791ff {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.WGS.A.hg38 C3N-02380 LUAD WGS tissue_normal CPT0146700009 9e8b489f-b11f-4dbf-9a2e-ca4d841fd750_wgs_gdc_realn.bam 81901208240 BAM harmonized CPTAC3 70c15ed3-a186-4bd9-8892-1be6d382f478 7110055d54b9dacea6fd5f984488cf43 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.WGS.N C3N-02380 LUAD WGS blood_normal CPT0146710002 CPT0146710002.WholeGenome.RP-1303.bam 56430050706 BAM aligned CPTAC3 b827f9fc-9b84-466f-9db3-f75cf9c3ad83 98e39b6a8842ff3fcfd8d3f25a34ce53 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02380.WGS.N.hg38 C3N-02380 LUAD WGS blood_normal CPT0146710002 c3e4b231-2012-4de9-a469-b311f2a98f6e_wgs_gdc_realn.bam 83244421319 BAM harmonized CPTAC3 330da8c0-e1a7-4100-93af-fac1e1fec3e6 9d6930e43dd6b394fc58d049be8dee55 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02380.WGS.T C3N-02380 LUAD WGS tumor CPT0146680010 CPT0146680010.WholeGenome.RP-1303.bam 59531235775 BAM aligned CPTAC3 0b82f43a-21a2-426f-ab2c-8328f4f9f21c f56332e52f3f07c44a344d01e3d53687 {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor"} -C3N-02380.WGS.T.hg38 C3N-02380 LUAD WGS tumor CPT0146680010 51b40096-00ec-4257-8bcd-95677769074c_wgs_gdc_realn.bam 86959994000 BAM harmonized CPTAC3 c741d4be-78e3-4aed-924c-e62b5cdda94e 26f0e58265687d088818f19d7ef7f7b8 {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor"} -C3N-02380.WXS.A C3N-02380 LUAD WXS tissue_normal CPT0146700009 CPT0146700009.WholeExome.RP-1303.bam 26703453894 BAM aligned CPTAC3 22b92ac7-80eb-44d4-9646-3ce10ef62543 7c6ca273ff64bc5ff45e6873579102bc {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.WXS.A.hg38 C3N-02380 LUAD WXS tissue_normal CPT0146700009 9e8b489f-b11f-4dbf-9a2e-ca4d841fd750_wxs_gdc_realn.bam 36399537728 BAM harmonized CPTAC3 234a847e-eebb-4eb7-9d25-1e76e2fe64fa fb927b2690f7da378c9c2f9ef8c4b628 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02380.WXS.N C3N-02380 LUAD WXS blood_normal CPT0146710002 CPT0146710002.WholeExome.RP-1303.bam 27501266102 BAM aligned CPTAC3 ed1a658e-5907-4d03-89a5-a3c5bdbeb648 1df95df5b6f64d179970bffdfc4b1ed4 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02380.WXS.N.hg38 C3N-02380 LUAD WXS blood_normal CPT0146710002 c3e4b231-2012-4de9-a469-b311f2a98f6e_wxs_gdc_realn.bam 37538702354 BAM harmonized CPTAC3 c5887726-96d2-4f3c-aec1-c2535f1deb8a b9d53a311eaf02bbb2b824cf282889d4 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02380.WXS.T C3N-02380 LUAD WXS tumor CPT0146680010 CPT0146680010.WholeExome.RP-1303.bam 24870589841 BAM aligned CPTAC3 5c502c8f-683c-411f-beac-36231c4cc847 a4685744dc24803246ef04b2504ed56e {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor"} -C3N-02380.WXS.T.hg38 C3N-02380 LUAD WXS tumor CPT0146680010 51b40096-00ec-4257-8bcd-95677769074c_wxs_gdc_realn.bam 34287622206 BAM harmonized CPTAC3 0e7fdf34-60d9-4f8c-adbd-ccb40ae73e7b cdc7dc553add86a5c7863b0b9875de15 {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor"} -C3N-02421.MethArray.Green.A C3N-02421 LUAD Methylation_Array tissue_normal CPT0146800009 203271740111_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 761b3532-5ca8-4879-8611-c584e0795ca3 033477c5823ce3884ff139cd3dcd31d5 {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.MethArray.Green.T C3N-02421 LUAD Methylation_Array tumor CPT0146780010 203219650221_R03C01_Grn.idat 13676217 IDAT Green NA CPTAC3 d23a3a8c-96ac-4ee9-aea7-43932f74526a 7414850fba3fae6c1f8471683726b96d {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor"} -C3N-02421.MethArray.Red.A C3N-02421 LUAD Methylation_Array tissue_normal CPT0146800009 203271740111_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 fa1d0b58-dcbe-40aa-b48d-6ca07f8facf4 5a4813480c21da152e767990941b1a7c {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.MethArray.Red.T C3N-02421 LUAD Methylation_Array tumor CPT0146780010 203219650221_R03C01_Red.idat 13676217 IDAT Red NA CPTAC3 35b7b9a3-cc03-4062-994f-5be2c199898c b6011625113c3d0fbd290d8d07408d1a {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor"} -C3N-02421.miRNA-Seq.A.hg38 C3N-02421 LUAD miRNA-Seq tissue_normal CPT0146800006 3de035a5-6825-478c-8656-623997ec45ef_mirnaseq_gdc_realn.bam 286361145 BAM harmonized CPTAC3 dac8e778-17c7-4728-8397-326e1d596ecf 8054c70a5abe08256208fc89a46d00ec {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.miRNA-Seq.S12_L003_R1.T C3N-02421 LUAD miRNA-Seq tumor CPT0146780007 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L003_R1_001.unaln.bam 236531784 BAM S12_L003_R1 unaligned CPTAC3 d174447b-f91b-4edf-8780-75dc56b0e37c 31569decc118acfc97238fc567a78572 {"aliquot_tag": "ALQ_5b379e94", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02421.miRNA-Seq.S26_L002_R1.A C3N-02421 LUAD miRNA-Seq tissue_normal CPT0146800006 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L002_R1_001.unaln.bam 256571779 BAM S26_L002_R1 unaligned CPTAC3 09549adc-6d06-4dca-a79b-8748c77d302d 429273eea3562633f0cc648f9c7c5204 {"aliquot_tag": "ALQ_ed165716", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.miRNA-Seq.T.hg38 C3N-02421 LUAD miRNA-Seq tumor CPT0146780007 def3054e-0c78-4bc3-9408-d953d55afd72_mirnaseq_gdc_realn.bam 262387065 BAM harmonized CPTAC3 78e56c5a-ab97-46f0-b12a-774439545ed9 fd174ec3e41c29a1a58c363bfa61d5ac {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor"} -C3N-02421.RNA-Seq.chimeric.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.chimeric.gdc_realn.bam 161351414 BAM chimeric harmonized CPTAC3 940ba12f-43e6-4ba8-983a-fe9cccb8b7f2 497346069c1900f1a81409f9dc72cf93 {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.RNA-Seq.chimeric.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.chimeric.gdc_realn.bam 56379147 BAM chimeric harmonized CPTAC3 b373facd-9ca0-4692-a95a-aedf58609e51 d5ec5ee02935f5b86be4a2804605b0d4 {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor"} -C3N-02421.RNA-Seq.genomic.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.genomic.gdc_realn.bam 10822918633 BAM genomic harmonized CPTAC3 b61066ce-d956-4ce4-a753-a16ca2ec7326 d8e27c0d25a025fa5cf3afb7259e0676 {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.RNA-Seq.genomic.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.genomic.gdc_realn.bam 8271537887 BAM genomic harmonized CPTAC3 7a83c36f-0189-4a75-9fa8-9b512432ce5e 529c0c665d52e8ef7900cd7b5eb856ce {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor"} -C3N-02421.RNA-Seq.S15_L004_R1.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R1_001.fastq.gz 5090698736 FASTQ S15_L004_R1 unaligned CPTAC3 cca0b611-f53e-41c5-b1f2-5e0c562592d9 7a179cc4a07c21c8e4ee0ba6455f407d {"aliquot_tag": "ALQ_ed165716", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.RNA-Seq.S15_L004_R2.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R2_001.fastq.gz 5600672055 FASTQ S15_L004_R2 unaligned CPTAC3 dd03f2a9-0abb-40c1-bb0e-e883675522bc fadf4e2a77608c630342b14cde3dba76 {"aliquot_tag": "ALQ_ed165716", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.RNA-Seq.S8_L008_R1.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R1_001.fastq.gz 3884046169 FASTQ S8_L008_R1 unaligned CPTAC3 454aea97-0497-450c-b5bc-194cd9c4bcf2 3eaa0c69181d6817974eb3a454aa4783 {"aliquot_tag": "ALQ_5b379e94", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02421.RNA-Seq.S8_L008_R2.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R2_001.fastq.gz 4194831572 FASTQ S8_L008_R2 unaligned CPTAC3 3ec298f3-2bc0-470f-b207-8ea04963659b 5c63d90a36cb87aca622dd4ebd3cfee5 {"aliquot_tag": "ALQ_5b379e94", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02421.RNA-Seq.transcriptome.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.transcriptome.gdc_realn.bam 12707960432 BAM transcriptome harmonized CPTAC3 3e41f52e-2d52-459d-9a9b-2f83da9e2ea8 b56532322c9f3689b1b8df225cdd38a1 {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.RNA-Seq.transcriptome.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.transcriptome.gdc_realn.bam 9688638603 BAM transcriptome harmonized CPTAC3 320c0459-4afd-4309-9dea-6476c8133e46 ffbea8c9f1c2957bdfed839ba7a6d22a {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor"} -C3N-02421.WGS.A C3N-02421 LUAD WGS tissue_normal CPT0146800009 CPT0146800009.WholeGenome.RP-1303.bam 64151727026 BAM aligned CPTAC3 1282e4d4-610a-45ab-98e5-b8a71940d02e ab8b12680ed6730a58158b929ad2711b {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.WGS.A.hg38 C3N-02421 LUAD WGS tissue_normal CPT0146800009 4bbfd03b-ef99-4bba-aa9c-35a6e3286f4f_wgs_gdc_realn.bam 93704759641 BAM harmonized CPTAC3 0b8f35e0-73b4-41b2-9a72-3b7256ed21dc 7f3169ded0f29a6784e31d729395c9ef {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.WGS.N C3N-02421 LUAD WGS blood_normal CPT0146810002 CPT0146810002.WholeGenome.RP-1303.bam 54883826989 BAM aligned CPTAC3 091ed012-5259-4a22-bfed-c3861fe5b27f 53ba5ec11fd09e9a51a1e3b65a75b7b8 {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02421.WGS.N.hg38 C3N-02421 LUAD WGS blood_normal CPT0146810002 17bcd148-f1d4-4761-9af2-57a8d9604f34_wgs_gdc_realn.bam 79436881650 BAM harmonized CPTAC3 ec50023b-7ce4-4c19-9689-b8397d5bc8be 3ee76b66ffdb816a78486c233fd20a71 {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02421.WGS.T C3N-02421 LUAD WGS tumor CPT0146780010 CPT0146780010.WholeGenome.RP-1303.bam 60913503854 BAM aligned CPTAC3 cfab85a0-2b99-4706-95e6-56dcd6065d19 e72f1fc35188b3b60a2e7d5929ddddb5 {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor"} -C3N-02421.WGS.T.hg38 C3N-02421 LUAD WGS tumor CPT0146780010 df52656d-be0f-4c33-ab21-c0683e4a0b72_wgs_gdc_realn.bam 88306142565 BAM harmonized CPTAC3 9816531d-dc04-489a-944d-50ff7ecaf1a0 762d808c59fd9268419a10e035c4be8d {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor"} -C3N-02421.WXS.A C3N-02421 LUAD WXS tissue_normal CPT0146800009 CPT0146800009.WholeExome.RP-1303.bam 41777534229 BAM aligned CPTAC3 95e0c109-3be4-4e15-be77-82e49176437d dfc6da1bc4fa68f710cc749f20c87bf5 {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.WXS.A.hg38 C3N-02421 LUAD WXS tissue_normal CPT0146800009 4bbfd03b-ef99-4bba-aa9c-35a6e3286f4f_wxs_gdc_realn.bam 57520713316 BAM harmonized CPTAC3 9c6f243f-a285-472b-bba1-a46523b083d0 9bf50b81ffe8de1c4bebe846bf0d5360 {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02421.WXS.N C3N-02421 LUAD WXS blood_normal CPT0146810002 CPT0146810002.WholeExome.RP-1303.bam 20622612680 BAM aligned CPTAC3 23079701-a6cc-4c84-8111-2f52d1f5d8eb afa25e5a225b255a4cc5162d8763fab3 {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02421.WXS.N.hg38 C3N-02421 LUAD WXS blood_normal CPT0146810002 17bcd148-f1d4-4761-9af2-57a8d9604f34_wxs_gdc_realn.bam 27618331808 BAM harmonized CPTAC3 3e46b1e7-a2ee-4c65-9faf-8e219993da80 bead648df62f4345e3333b219305970e {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02421.WXS.T C3N-02421 LUAD WXS tumor CPT0146780010 CPT0146780010.WholeExome.RP-1303.bam 23269510177 BAM aligned CPTAC3 0b53057b-82b7-46de-b00b-be7919dd4de6 f31d550869405cebaef4677eddb7a8b6 {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor"} -C3N-02421.WXS.T.hg38 C3N-02421 LUAD WXS tumor CPT0146780010 df52656d-be0f-4c33-ab21-c0683e4a0b72_wxs_gdc_realn.bam 31571843073 BAM harmonized CPTAC3 743f1aa5-0b98-4836-b9f0-a76b7525d1af 6e564785b71fec414dfb4ab7d1abdaf1 {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor"} -C3N-02422.MethArray.Green.T C3N-02422 LUAD Methylation_Array tumor CPT0146880010 203219720176_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 08a4df8e-8407-4916-9b5b-6f57766c466e 2c9f8d1fc384027fd29c684422948319 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor"} -C3N-02422.MethArray.Red.T C3N-02422 LUAD Methylation_Array tumor CPT0146880010 203219720176_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 04a22d7f-2648-4a0b-a340-0ea635cc8d7d e20ed1f98daac275717106c73a705b55 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor"} -C3N-02422.miRNA-Seq.S13_L003_R1.T C3N-02422 LUAD miRNA-Seq tumor CPT0146880007 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L003_R1_001.unaln.bam 287838469 BAM S13_L003_R1 unaligned CPTAC3 88a4ef9e-2857-4fa4-b1ca-430b4288791d 9970a1804bae88cba53ac06f3b594d34 {"aliquot_tag": "ALQ_aa612c41", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02422.miRNA-Seq.T.hg38 C3N-02422 LUAD miRNA-Seq tumor CPT0146880007 cdbee926-9a4d-4c0d-8a01-89005a32b6be_mirnaseq_gdc_realn.bam 315524344 BAM harmonized CPTAC3 73125572-e567-46bb-9fd8-47a30375eb96 f108aa6f09584d545ecdb1fc6cd0e961 {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor"} -C3N-02422.RNA-Seq.chimeric.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.chimeric.gdc_realn.bam 42440802 BAM chimeric harmonized CPTAC3 ce282f7d-9298-48da-b378-a79d1ff3474b a76d8ebb7d5b9ad66356142d515b351f {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor"} -C3N-02422.RNA-Seq.genomic.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.genomic.gdc_realn.bam 7358416711 BAM genomic harmonized CPTAC3 a6b42b3a-0ccc-480c-9c6f-b8ccd4722bdd bfe53be42fe6ef774c1356e159268f56 {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor"} -C3N-02422.RNA-Seq.S7_L008_R1.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R1_001.fastq.gz 3308540565 FASTQ S7_L008_R1 unaligned CPTAC3 147fb7cf-44ef-4499-96d7-54f30d6d6562 4f96558cfe2927590d8a425faa41037e {"aliquot_tag": "ALQ_aa612c41", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02422.RNA-Seq.S7_L008_R2.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R2_001.fastq.gz 3640360440 FASTQ S7_L008_R2 unaligned CPTAC3 8cd424a4-9961-483b-9147-514293b54155 1c06c65dc5d873c89560179d05eb97e7 {"aliquot_tag": "ALQ_aa612c41", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02422.RNA-Seq.transcriptome.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.transcriptome.gdc_realn.bam 8488543674 BAM transcriptome harmonized CPTAC3 d63c5e1e-80d9-46b8-81df-3320f5b6c058 5e4a533ac3d87d72bb4d9b3310bbd079 {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor"} -C3N-02422.WGS.N C3N-02422 LUAD WGS blood_normal CPT0146910002 CPT0146910002.WholeGenome.RP-1303.bam 58280953535 BAM aligned CPTAC3 05c86947-3dd1-4456-b6e5-3fd973d00d3e a63d235d670e2ccc718c36058674168c {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02422.WGS.N.hg38 C3N-02422 LUAD WGS blood_normal CPT0146910002 992af5b1-11e4-4fa6-9893-e1f5b46f1855_wgs_gdc_realn.bam 85418823367 BAM harmonized CPTAC3 553a682a-ab16-40b5-a63c-663fd2b8a652 788214eb18013c19208165a4b36ed360 {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02422.WGS.T C3N-02422 LUAD WGS tumor CPT0146880010 CPT0146880010.WholeGenome.RP-1303.bam 57812331919 BAM aligned CPTAC3 684d84fb-e382-4d8f-878b-93e398435c1b 4679d51e48946dd43ff5cc79c1ff0890 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor"} -C3N-02422.WGS.T.hg38 C3N-02422 LUAD WGS tumor CPT0146880010 cbc0b258-c4ca-422e-92cf-764929637731_wgs_gdc_realn.bam 86014339255 BAM harmonized CPTAC3 6e6e6eef-1408-4cfc-a71a-7cb0505c808a 167a6bd57a7a6d58e7fa6d9a7259acab {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor"} -C3N-02422.WXS.N C3N-02422 LUAD WXS blood_normal CPT0146910002 CPT0146910002.WholeExome.RP-1303.bam 25794086650 BAM aligned CPTAC3 8469ebc6-a325-41a0-89f0-fbe4f25b7a19 76effef074d64c773c94678e7cfdd22a {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02422.WXS.N.hg38 C3N-02422 LUAD WXS blood_normal CPT0146910002 992af5b1-11e4-4fa6-9893-e1f5b46f1855_wxs_gdc_realn.bam 35017763835 BAM harmonized CPTAC3 c2a5c0aa-f145-489d-ba4e-4988c9f362d6 d903e29362652ff28fe06f83555ccdc0 {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02422.WXS.T C3N-02422 LUAD WXS tumor CPT0146880010 CPT0146880010.WholeExome.RP-1303.bam 23791819213 BAM aligned CPTAC3 9054913e-6c1d-48b1-8c9f-5d84a17062ba 55e95c5485e3a580a7e7e06ab2ce67c5 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor"} -C3N-02422.WXS.T.hg38 C3N-02422 LUAD WXS tumor CPT0146880010 cbc0b258-c4ca-422e-92cf-764929637731_wxs_gdc_realn.bam 33066135267 BAM harmonized CPTAC3 b42b5652-41e3-4a3a-96db-900de3e9e466 e2844e37dbdadb53a5f17e8917b10fe1 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor"} -C3N-02423.MethArray.Green.A C3N-02423 LUAD Methylation_Array tissue_normal CPT0147000009 203219650006_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 7ef9470e-ed89-461e-9a1f-ce49b62d14db e503c64394d9a4f1b9e633ddb6579d63 {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.MethArray.Green.T C3N-02423 LUAD Methylation_Array tumor CPT0146980010 203028200048_R08C01_Grn.idat 13676232 IDAT Green NA CPTAC3 0623396d-b60c-43c2-af53-7d8f63669b7f 2a86ec7abfd213537a1f0dab0e7d726b {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor"} -C3N-02423.MethArray.Red.A C3N-02423 LUAD Methylation_Array tissue_normal CPT0147000009 203219650006_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 33c7f2a5-faf2-4b4c-b743-79332213159d a057d0fea4b618e0882c13c4522e7d1f {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.MethArray.Red.T C3N-02423 LUAD Methylation_Array tumor CPT0146980010 203028200048_R08C01_Red.idat 13676232 IDAT Red NA CPTAC3 631a18e9-2257-4a82-923a-8a9001b9469c 3634e84ad9a4ec6f2cc40e7b86a4f56c {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor"} -C3N-02423.miRNA-Seq.A.hg38 C3N-02423 LUAD miRNA-Seq tissue_normal CPT0147000006 62ee43af-abc0-4810-8805-ea602d966c75_mirnaseq_gdc_realn.bam 232199116 BAM harmonized CPTAC3 0c7a391b-7387-4288-bb96-662bf79bf678 333553a4f3632ed0829da4a0cab73011 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.miRNA-Seq.S14_L003_R1.T C3N-02423 LUAD miRNA-Seq tumor CPT0146980007 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L003_R1_001.unaln.bam 251750089 BAM S14_L003_R1 unaligned CPTAC3 d61ab204-950a-4aa9-a121-66078d818c25 48f01340dcb19fc2321ad1cb29ba5f5d {"aliquot_tag": "ALQ_613dffe4", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02423.miRNA-Seq.S27_L002_R1.A C3N-02423 LUAD miRNA-Seq tissue_normal CPT0147000006 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 205900991 BAM S27_L002_R1 unaligned CPTAC3 342c80b4-b3cf-4c10-a385-b718934843f3 f6d070c3c917a12540c91d4999bed183 {"aliquot_tag": "ALQ_a732decf", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.miRNA-Seq.T.hg38 C3N-02423 LUAD miRNA-Seq tumor CPT0146980007 5c98ae24-4d99-46d4-8d65-b792a68e34a5_mirnaseq_gdc_realn.bam 269087814 BAM harmonized CPTAC3 f5c44cac-cae8-4745-82a6-7426b5ba469a 9f8d8690e58501e0dabf521d8d343ab3 {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor"} -C3N-02423.RNA-Seq.chimeric.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.chimeric.gdc_realn.bam 136152932 BAM chimeric harmonized CPTAC3 33de3779-597b-4607-ac86-262a932938cd 01611bcae5f5dc97205c416fb5f93487 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.RNA-Seq.chimeric.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.chimeric.gdc_realn.bam 64247233 BAM chimeric harmonized CPTAC3 1d774325-34fa-4623-89cf-1a8db2e78f78 3615d2c4c9fcbff47f380db72e9b80d3 {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor"} -C3N-02423.RNA-Seq.genomic.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.genomic.gdc_realn.bam 8686773264 BAM genomic harmonized CPTAC3 f1b25e7d-dc8b-4fb6-a168-3124d31bd35c d2d3426a3509393c44c3e48ea10d9f16 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.RNA-Seq.genomic.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.genomic.gdc_realn.bam 8666348471 BAM genomic harmonized CPTAC3 84de0d9a-8b4b-40a5-850e-037e6ebf5082 a1acf9512e3347cfd98aff0fb15522ab {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor"} -C3N-02423.RNA-Seq.S14_L004_R1.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 3989790171 FASTQ S14_L004_R1 unaligned CPTAC3 a4c506c9-e1a9-4c69-99bf-3f9c1c8bb042 a05eec00b00ca57bdbc3c12ae02e7df2 {"aliquot_tag": "ALQ_a732decf", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.RNA-Seq.S14_L004_R2.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4422225843 FASTQ S14_L004_R2 unaligned CPTAC3 694fe6fe-7c01-4060-8626-b01c73ed3a7a 19cf188165100f07bbb6769b5a1430e8 {"aliquot_tag": "ALQ_a732decf", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.RNA-Seq.S3_L007_R1.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R1_001.fastq.gz 4010210061 FASTQ S3_L007_R1 unaligned CPTAC3 4fd065e7-2b2a-48ec-a342-c2dd97a38e9f a22449027e8f90d08fc2ff4454236703 {"aliquot_tag": "ALQ_613dffe4", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02423.RNA-Seq.S3_L007_R2.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R2_001.fastq.gz 4258304420 FASTQ S3_L007_R2 unaligned CPTAC3 70f8ae40-6313-4b6b-9a03-c709f96d1ee2 ceffa5459ffee7022547337309fb1037 {"aliquot_tag": "ALQ_613dffe4", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02423.RNA-Seq.transcriptome.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.transcriptome.gdc_realn.bam 9245671347 BAM transcriptome harmonized CPTAC3 7dc88d9c-e8d8-452d-9932-180e77589b1a 41dda30dc09680008ef9ff8d9cd5bcc0 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.RNA-Seq.transcriptome.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.transcriptome.gdc_realn.bam 10101956587 BAM transcriptome harmonized CPTAC3 7b14152b-3924-4ff1-acb1-71f98ac899d2 52c10e007982c4273d9a6454567727f4 {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor"} -C3N-02423.WGS.A C3N-02423 LUAD WGS tissue_normal CPT0147000009 CPT0147000009.WholeGenome.RP-1303.bam 72711987230 BAM aligned CPTAC3 966c074c-90dc-4ec0-ad90-ebcb9e6fb174 8f9d173fbc3464b76975e43d4bee49c9 {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.WGS.A.hg38 C3N-02423 LUAD WGS tissue_normal CPT0147000009 ab6eb7aa-5447-4e8a-89fd-c608b23c46c1_wgs_gdc_realn.bam 107574015918 BAM harmonized CPTAC3 2be5cad7-883c-4fe7-932c-a0ac809e1ba8 4895e355be4130cd754434af867eec5e {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.WGS.N C3N-02423 LUAD WGS blood_normal CPT0147010002 CPT0147010002.WholeGenome.RP-1303.bam 63627477024 BAM aligned CPTAC3 8d672e43-51ce-44b6-9665-04593b75f600 2a725128ff0d873a770a31ef3d4eeb71 {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal"} -C3N-02423.WGS.N.hg38 C3N-02423 LUAD WGS blood_normal CPT0147010002 8a50eabb-8cb9-48fd-875a-f83ae14a0f3a_wgs_gdc_realn.bam 93560628391 BAM harmonized CPTAC3 1f8046db-25cb-4977-940b-49d90026fe74 3aec6d98e3ffd44683d5b1ae107b4e8b {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal"} -C3N-02423.WGS.T C3N-02423 LUAD WGS tumor CPT0146980010 CPT0146980010.WholeGenome.RP-1303.bam 63861741260 BAM aligned CPTAC3 7ba00f9d-67d8-4c8f-94e7-ceb30aaabf1e a6acda918f328ecec3281a4a611dcb05 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor"} -C3N-02423.WGS.T.hg38 C3N-02423 LUAD WGS tumor CPT0146980010 274ceeb7-b7b7-4b02-be3f-38a503721389_wgs_gdc_realn.bam 94413566057 BAM harmonized CPTAC3 8e9d0e55-0b50-419f-af7f-c39878d61184 291dd50828fb08cb21abbf5a6b20b075 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor"} -C3N-02423.WXS.A C3N-02423 LUAD WXS tissue_normal CPT0147000009 CPT0147000009.WholeExome.RP-1303.bam 48018296557 BAM aligned CPTAC3 04ad925b-53f4-47ae-884a-08d728535089 321bc33593f3bc0d00df91a8289cd8b0 {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.WXS.A.hg38 C3N-02423 LUAD WXS tissue_normal CPT0147000009 ab6eb7aa-5447-4e8a-89fd-c608b23c46c1_wxs_gdc_realn.bam 66166826481 BAM harmonized CPTAC3 0e1def47-9169-41bd-9387-2cecbb61e66a 1ac331eb00c8153c75766516ae65406b {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02423.WXS.N C3N-02423 LUAD WXS blood_normal CPT0147010002 CPT0147010002.WholeExome.RP-1303.bam 28202253855 BAM aligned CPTAC3 55a8234f-f14d-41c9-8210-56e1a02bce59 8c1f41b777a32c5fccaa88496c1a78dc {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal"} -C3N-02423.WXS.N.hg38 C3N-02423 LUAD WXS blood_normal CPT0147010002 8a50eabb-8cb9-48fd-875a-f83ae14a0f3a_wxs_gdc_realn.bam 38432990320 BAM harmonized CPTAC3 a5d7bd93-5120-4c07-a22b-4da7663ba9c6 520aa54539f3754ba9008163b4f64fd1 {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal"} -C3N-02423.WXS.T C3N-02423 LUAD WXS tumor CPT0146980010 CPT0146980010.WholeExome.RP-1303.bam 25397466159 BAM aligned CPTAC3 6f7291e7-d786-4237-9182-d57298b0c81b 12a47d0cce56575a155123af2c4cb8f7 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor"} -C3N-02423.WXS.T.hg38 C3N-02423 LUAD WXS tumor CPT0146980010 274ceeb7-b7b7-4b02-be3f-38a503721389_wxs_gdc_realn.bam 33976030240 BAM harmonized CPTAC3 dce3d113-f350-4898-89b4-4b5b74cafcfd d1012882c66e7fae65e38ebab0053bb3 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor"} -C3N-02424.MethArray.Green.A C3N-02424 LUAD Methylation_Array tissue_normal CPT0147100009 203219650164_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 24a5af96-c06d-47b8-a06c-2ff4b254b89a ebfdb020082ad0d1da761ee378d031eb {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.MethArray.Green.T C3N-02424 LUAD Methylation_Array tumor CPT0147080010 203219640157_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0ca37125-a9d6-40ba-a007-83823f008683 5b9b93ec312f9557c5d79b2359660aed {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor"} -C3N-02424.MethArray.Red.A C3N-02424 LUAD Methylation_Array tissue_normal CPT0147100009 203219650164_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 ec924456-31e3-4eba-a3f8-2fd3f3733be1 6e7c7bb77ddffd9aaf73ac2d2016082a {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.MethArray.Red.T C3N-02424 LUAD Methylation_Array tumor CPT0147080010 203219640157_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 97a01e78-66ea-4153-aece-b4d9ff93447b e02c397565d8218c85f00372e5c9e58d {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor"} -C3N-02424.miRNA-Seq.A.hg38 C3N-02424 LUAD miRNA-Seq tissue_normal CPT0147100006 953cf486-db1c-4156-b485-df2046bb7507_mirnaseq_gdc_realn.bam 241739142 BAM harmonized CPTAC3 9d603494-7bf0-4964-b888-9f32fc4b9df7 69875b8f0e09b2331ae472d7db41e181 {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.miRNA-Seq.S15_L003_R1.T C3N-02424 LUAD miRNA-Seq tumor CPT0147080007 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L003_R1_001.unaln.bam 168652527 BAM S15_L003_R1 unaligned CPTAC3 4be6eb61-9c21-4607-8c33-4d648aeefb0d 6dfc0f8306d612f4dea304275f727215 {"aliquot_tag": "ALQ_e045a598", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02424.miRNA-Seq.S28_L002_R1.A C3N-02424 LUAD miRNA-Seq tissue_normal CPT0147100006 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L002_R1_001.unaln.bam 219425060 BAM S28_L002_R1 unaligned CPTAC3 43bf490a-b9c0-40ca-80af-bedbe41e7507 849969c89a81f08e1e06402bc1b7d032 {"aliquot_tag": "ALQ_6c6e0d6a", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.miRNA-Seq.T.hg38 C3N-02424 LUAD miRNA-Seq tumor CPT0147080007 175c75d1-2da5-4a65-9c99-eb2e4d51932f_mirnaseq_gdc_realn.bam 188451747 BAM harmonized CPTAC3 8c4cc77a-e252-400d-a38b-ac3645b25224 cca5ff6723e77be924285af3ea9797ce {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor"} -C3N-02424.RNA-Seq.chimeric.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.chimeric.gdc_realn.bam 98157424 BAM chimeric harmonized CPTAC3 994c9024-e46a-49a5-a772-18ca96116323 de423bfdef6b14d7a144fde3dd19d0db {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.RNA-Seq.chimeric.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.chimeric.gdc_realn.bam 36911713 BAM chimeric harmonized CPTAC3 257e3c39-ae52-436d-8e82-d59a36c163d0 ca5d1a1bc2c65b9d48d5f8ca012d3cf2 {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor"} -C3N-02424.RNA-Seq.genomic.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.genomic.gdc_realn.bam 8254351882 BAM genomic harmonized CPTAC3 102be50a-c187-42c2-b508-91997e667006 1e891ce070c84deffa0fa5f9016d81fd {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.RNA-Seq.genomic.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.genomic.gdc_realn.bam 8264822746 BAM genomic harmonized CPTAC3 8bf22877-329d-4247-a5f8-0792bd175323 6fd0cb1bb72682f68f3217db0b909833 {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor"} -C3N-02424.RNA-Seq.S13_L004_R1.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R1_001.fastq.gz 3700325671 FASTQ S13_L004_R1 unaligned CPTAC3 fe53df08-c9b4-4018-b557-cfb79f8bb720 337f9cd962dba1e171eef9b001528f80 {"aliquot_tag": "ALQ_6c6e0d6a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.RNA-Seq.S13_L004_R2.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R2_001.fastq.gz 3993535232 FASTQ S13_L004_R2 unaligned CPTAC3 11a9f07b-2e64-4980-ac70-b1f231e5bfe4 f0f8bfc84fd295a86cbec44073dfd598 {"aliquot_tag": "ALQ_6c6e0d6a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.RNA-Seq.S2_L007_R1.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R1_001.fastq.gz 3391799240 FASTQ S2_L007_R1 unaligned CPTAC3 b493e4f4-c695-4b57-949d-688a46a0cd38 aaa32199c7d8bd144c5d56d741517d62 {"aliquot_tag": "ALQ_e045a598", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02424.RNA-Seq.S2_L007_R2.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R2_001.fastq.gz 3638484505 FASTQ S2_L007_R2 unaligned CPTAC3 7e6247d9-22e0-4d96-85e3-75a9931c5036 7c7da2649c940c6af7583f6e4e20b1c9 {"aliquot_tag": "ALQ_e045a598", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02424.RNA-Seq.transcriptome.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.transcriptome.gdc_realn.bam 9260803495 BAM transcriptome harmonized CPTAC3 8d42f9bb-231d-4091-ac43-779d2e56168c ceeb5500faab975a1d0521c2274c97f9 {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.RNA-Seq.transcriptome.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.transcriptome.gdc_realn.bam 9327213882 BAM transcriptome harmonized CPTAC3 e53e1432-f3d3-47d4-bc97-ca27c3d72e36 5631ce1fade6f59c0186905eab4843a8 {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor"} -C3N-02424.WGS.A C3N-02424 LUAD WGS tissue_normal CPT0147100009 CPT0147100009.WholeGenome.RP-1303.bam 59401001682 BAM aligned CPTAC3 1f4559b3-6d3c-4424-a866-5612f43d53c0 c6340a6c5824de66705187c096331055 {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.WGS.A.hg38 C3N-02424 LUAD WGS tissue_normal CPT0147100009 67833e4f-0dc8-4ac0-8ce9-6ee52ecd2375_wgs_gdc_realn.bam 86954588180 BAM harmonized CPTAC3 5f6e383c-14dc-4b37-9caa-30b139270c79 ea95d0141a59dba0cfe5cffce409789a {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.WGS.N C3N-02424 LUAD WGS blood_normal CPT0147110002 CPT0147110002.WholeGenome.RP-1303.bam 56369439519 BAM aligned CPTAC3 8fa4a810-26d6-4a00-8dae-0f38f3a2a0a3 0d49e7bc54938a054f04263ab4487565 {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02424.WGS.N.hg38 C3N-02424 LUAD WGS blood_normal CPT0147110002 b4e53e9f-2917-4cae-b2c6-6feaa2594d37_wgs_gdc_realn.bam 82548105039 BAM harmonized CPTAC3 19e3ade5-44c5-4976-8f68-a2f41c39f6a4 9d770c9dbd0883590df694cfdfc5825a {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02424.WGS.T C3N-02424 LUAD WGS tumor CPT0147080010 CPT0147080010.WholeGenome.RP-1303.bam 54279413884 BAM aligned CPTAC3 939d4e38-97a0-4ac2-83e4-aa1b6b519786 366689d27a260f01d32971a238fc13cb {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor"} -C3N-02424.WGS.T.hg38 C3N-02424 LUAD WGS tumor CPT0147080010 8a378a0d-4f1b-434b-bb5d-1c58464508c7_wgs_gdc_realn.bam 78848854254 BAM harmonized CPTAC3 4d8143de-035d-4a5c-a107-8b941db9f8a8 448e53c4f24ffa0f5a5db436dc8d0016 {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor"} -C3N-02424.WXS.A C3N-02424 LUAD WXS tissue_normal CPT0147100009 CPT0147100009.WholeExome.RP-1303.bam 23447463982 BAM aligned CPTAC3 af7a67bb-737a-4d8c-8c0c-64ed0bbd639c 56db862bd0a2a29b7a97c7998ae383ff {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.WXS.A.hg38 C3N-02424 LUAD WXS tissue_normal CPT0147100009 67833e4f-0dc8-4ac0-8ce9-6ee52ecd2375_wxs_gdc_realn.bam 32004020387 BAM harmonized CPTAC3 68c40083-a383-4658-af7b-57ceb40cbbed f804448732befc39e730932f8778f645 {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02424.WXS.N C3N-02424 LUAD WXS blood_normal CPT0147110002 CPT0147110002.WholeExome.RP-1303.bam 35048486270 BAM aligned CPTAC3 5f020e61-4927-4571-8716-691db13378a0 37bdd3c031e2e186835de6e7ee78071f {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02424.WXS.N.hg38 C3N-02424 LUAD WXS blood_normal CPT0147110002 b4e53e9f-2917-4cae-b2c6-6feaa2594d37_wxs_gdc_realn.bam 47082662299 BAM harmonized CPTAC3 95c65d7f-22cc-4d98-9558-857cbd8b059e f96f1b55ca9bed342708215a851a38ee {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02424.WXS.T C3N-02424 LUAD WXS tumor CPT0147080010 CPT0147080010.WholeExome.RP-1303.bam 21804259642 BAM aligned CPTAC3 2e825448-79db-411a-9f64-5e1fd0de7faa c49039a3adbd3d0ff44941698e92532c {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor"} -C3N-02424.WXS.T.hg38 C3N-02424 LUAD WXS tumor CPT0147080010 8a378a0d-4f1b-434b-bb5d-1c58464508c7_wxs_gdc_realn.bam 29865328145 BAM harmonized CPTAC3 053f60e4-9af4-4f76-b385-ad3b64f3309f 7ff3fcaeaefd264b4ba4f1c22e45f3c3 {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor"} -C3N-02425.MethArray.Green.A C3N-02425 LSCC Methylation_Array tissue_normal CPT0183270006 203219650221_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 cfb2ab63-3c11-4d90-bacc-a847056e42f8 d0b4e9f316c52a1ac3f32d5330d62567 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.MethArray.Green.T C3N-02425 LSCC Methylation_Array tumor CPT0183250007 203219650177_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 917061d8-664d-48fb-a319-183eb344fbd6 c25c63de25d46436a9974e8381a3d9af {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor"} -C3N-02425.MethArray.Red.A C3N-02425 LSCC Methylation_Array tissue_normal CPT0183270006 203219650221_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 ceb65dba-7343-44d0-991a-7108e974dc9f e1043eb7a31e363771e3b3f82aede94b {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.MethArray.Red.T C3N-02425 LSCC Methylation_Array tumor CPT0183250007 203219650177_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 5735844e-3589-4499-bde9-c7ff24302a6c 12b255aba7447ca3ef77b85cc20936a9 {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor"} -C3N-02425.miRNA-Seq.A.hg38 C3N-02425 LSCC miRNA-Seq tissue_normal CPT0183270009 fc765b12-2446-44d0-bcfa-bef86f26e81e_mirnaseq_gdc_realn.bam 231197459 BAM harmonized CPTAC3 eb79db45-15dd-429b-b6f0-1aee759215de 847bdcfdd53fb87327ecd6f0f65b55fb {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.miRNA-Seq.S13_L003_R1.T C3N-02425 LSCC miRNA-Seq tumor CPT0183250010 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTCAA_S13_L003_R1_001.unaln.bam 208420688 BAM S13_L003_R1 unaligned CPTAC3 b1067c46-807d-4e4e-941e-2187285f5ca1 598fb91d03f4525e9b78cf2deced7d24 {"aliquot_tag": "ALQ_7182559c", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02425.miRNA-Seq.S16_L003_R1.A C3N-02425 LSCC miRNA-Seq tissue_normal CPT0183270009 181219_UNC31-K00269_0173_BHYGJJBBXX_CCGTCC_S16_L003_R1_001.unaln.bam 205152882 BAM S16_L003_R1 unaligned CPTAC3 6fff9b8f-5713-4b9b-b352-874b4ee6dfa5 859ca22f9539c166af6feaff6d67eb93 {"aliquot_tag": "ALQ_6b858f19", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.miRNA-Seq.T.hg38 C3N-02425 LSCC miRNA-Seq tumor CPT0183250010 519dca7c-1569-4434-8973-895a243ea645_mirnaseq_gdc_realn.bam 243984815 BAM harmonized CPTAC3 9a868cf9-cdb3-48d3-8a55-37af73dc563f 1984799f5f7177795be98a6681367dfc {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor"} -C3N-02425.RNA-Seq.chimeric.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.chimeric.gdc_realn.bam 123996928 BAM chimeric harmonized CPTAC3 d2b9a86c-ff09-4d63-aed2-02b44d04b5e8 803da8226c968e29103f8eec942952d1 {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.RNA-Seq.chimeric.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.chimeric.gdc_realn.bam 133213494 BAM chimeric harmonized CPTAC3 8dbfe855-69b9-49d9-91b4-a3ee6d99cbc2 1dab12c98551ff9e9527318076982a0c {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor"} -C3N-02425.RNA-Seq.genomic.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.genomic.gdc_realn.bam 9471228877 BAM genomic harmonized CPTAC3 2a680dc9-e57d-43dd-906a-374c9f6d877c 6e2312b19f34276ea6196dd7a9967282 {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.RNA-Seq.genomic.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.genomic.gdc_realn.bam 7497868509 BAM genomic harmonized CPTAC3 ec91f9a5-8ae2-4925-97c4-55f73d407ba3 09e1db895ced2a129af0ee148cb7644e {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor"} -C3N-02425.RNA-Seq.S25_L005_R1.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R1_001.fastq.gz 3469878631 FASTQ S25_L005_R1 unaligned CPTAC3 b6a712b2-6c76-4697-bf02-b1f57d227d94 7e065a79003e33206b2cb45a3328e3ac {"aliquot_tag": "ALQ_7182559c", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02425.RNA-Seq.S25_L005_R2.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R2_001.fastq.gz 3619589061 FASTQ S25_L005_R2 unaligned CPTAC3 e7f746b3-1b4d-41e9-b059-a2a72b507717 0dce386f2121042626d20fb60f9288db {"aliquot_tag": "ALQ_7182559c", "sample": "S25", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02425.RNA-Seq.S26_L005_R1.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R1_001.fastq.gz 4653520943 FASTQ S26_L005_R1 unaligned CPTAC3 ffa8ad9b-ddb5-4837-a842-7216d5614f91 62a02c63ad9db32c7e126f2064fd92be {"aliquot_tag": "ALQ_6b858f19", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.RNA-Seq.S26_L005_R2.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R2_001.fastq.gz 4800071059 FASTQ S26_L005_R2 unaligned CPTAC3 081b2745-ad92-4431-b857-0a88900f49eb 26544825dc82ca24c0a107ef891284cc {"aliquot_tag": "ALQ_6b858f19", "sample": "S26", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.RNA-Seq.transcriptome.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.transcriptome.gdc_realn.bam 12754217671 BAM transcriptome harmonized CPTAC3 0e65a21b-285f-446f-ab58-9d8575c31737 a2fe6db563b29f2d585cb83f10e8f1d6 {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.RNA-Seq.transcriptome.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.transcriptome.gdc_realn.bam 10140660033 BAM transcriptome harmonized CPTAC3 14506509-c395-44cb-b732-5f1d4e4d750a dd175af5cc77f51d708d3f2908d0d05d {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor"} -C3N-02425.WGS.A C3N-02425 LSCC WGS tissue_normal CPT0183270006 CPT0183270006.WholeGenome.RP-1303.bam 68113658987 BAM aligned CPTAC3 4fc9a6a1-4281-4db6-99d5-466e1d3fde02 8bd9563f1f0968e39335370a46849e63 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.WGS.A.hg38 C3N-02425 LSCC WGS tissue_normal CPT0183270006 e10db3e3-1144-4ef7-a960-e98f71a8c0a9_wgs_gdc_realn.bam 99336459347 BAM harmonized CPTAC3 3f22544c-f89c-4b01-9334-1e1b3465a1e4 6e24c219974886939d79a478f006c1b0 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.WGS.N C3N-02425 LSCC WGS blood_normal CPT0183310002 CPT0183310002.WholeGenome.RP-1303.bam 64957893306 BAM aligned CPTAC3 882edb3a-19e9-4689-8086-f8e02e2ed219 25cfe78e19e0fcd5470d2c8715b4a127 {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal"} -C3N-02425.WGS.N.hg38 C3N-02425 LSCC WGS blood_normal CPT0183310002 72330c53-0b7a-409b-9e93-11c08fc31d6d_wgs_gdc_realn.bam 94482265954 BAM harmonized CPTAC3 609f227d-1b3f-47be-86f2-8cd4abbd2c25 f1ce2bd8d2b005fb11dc74df1b09ed0b {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal"} -C3N-02425.WGS.T C3N-02425 LSCC WGS tumor CPT0183250007 CPT0183250007.WholeGenome.RP-1303.bam 64636891482 BAM aligned CPTAC3 095320ea-da84-4bd9-96f3-eb24a9634d28 7a30ce57b10ba81137171bae26102461 {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor"} -C3N-02425.WGS.T.hg38 C3N-02425 LSCC WGS tumor CPT0183250007 e34fc8d9-c7d2-4546-a98a-b789b4789e3c_wgs_gdc_realn.bam 94924473332 BAM harmonized CPTAC3 82cb75c9-ab32-47eb-998d-8b4fe4469eaf fbb8bb44af36cc1ea92f5d41587ec77c {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor"} -C3N-02425.WXS.A C3N-02425 LSCC WXS tissue_normal CPT0183270006 CPT0183270006.WholeExome.RP-1303.bam 22590931927 BAM aligned CPTAC3 1190e57a-7ec0-48cd-a1c7-784034f8fdad aa58682718f609df30c1802d7141f232 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.WXS.A.hg38 C3N-02425 LSCC WXS tissue_normal CPT0183270006 e10db3e3-1144-4ef7-a960-e98f71a8c0a9_wxs_gdc_realn.bam 31106816178 BAM harmonized CPTAC3 b907fb7c-9ee7-4414-90ba-e79ca4ae7726 5a7d10d032e128d30a6308bbe6bb38f9 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02425.WXS.N C3N-02425 LSCC WXS blood_normal CPT0183310002 CPT0183310002.WholeExome.RP-1303.bam 22046831509 BAM aligned CPTAC3 ab35bcc0-4db8-4a96-8c13-7813033e4150 a44121d23f664e21015efc36163065af {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal"} -C3N-02425.WXS.N.hg38 C3N-02425 LSCC WXS blood_normal CPT0183310002 72330c53-0b7a-409b-9e93-11c08fc31d6d_wxs_gdc_realn.bam 30336413356 BAM harmonized CPTAC3 eaa786cd-e457-427d-85c3-cfdd9897cde2 a82efa3fe489ea4355452b95b1d88d28 {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal"} -C3N-02425.WXS.T C3N-02425 LSCC WXS tumor CPT0183250007 CPT0183250007.WholeExome.RP-1303.bam 25821111599 BAM aligned CPTAC3 8a04394a-3974-4314-a018-5f71d648ddd1 0e909d2f34300d74fd47344c1b1f22a3 {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor"} -C3N-02425.WXS.T.hg38 C3N-02425 LSCC WXS tumor CPT0183250007 e34fc8d9-c7d2-4546-a98a-b789b4789e3c_wxs_gdc_realn.bam 35276894044 BAM harmonized CPTAC3 1bb8f868-05ec-45c8-8edd-959cb60855b8 862fee334c71faec1ddf7cf53d47097d {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor"} -C3N-02426.MethArray.Green.A C3N-02426 LSCC Methylation_Array tissue_normal CPT0147200009 203220070171_R01C01_Grn.idat 13676219 IDAT Green NA CPTAC3 6efc7ca3-bee9-4a49-ad52-84f6105b20d3 ba726a2205e7f069d377c4a5518beedb {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.MethArray.Green.T C3N-02426 LSCC Methylation_Array tumor CPT0147180010 203219650211_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 95c54064-b6d7-4390-8c50-be500f263261 0be3acfde09ba88a76a884365c1b551a {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor"} -C3N-02426.MethArray.Red.A C3N-02426 LSCC Methylation_Array tissue_normal CPT0147200009 203220070171_R01C01_Red.idat 13676219 IDAT Red NA CPTAC3 b84ac8f4-fc99-453d-881a-5b0976eb6542 a59993bc7f513121d1d3cca4bf6a6484 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.MethArray.Red.T C3N-02426 LSCC Methylation_Array tumor CPT0147180010 203219650211_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 652f6e2d-003c-4a35-87d4-342127ce89b5 1e6ac6c787a4bd72d79de7180a2c4685 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor"} -C3N-02426.miRNA-Seq.A.hg38 C3N-02426 LSCC miRNA-Seq tissue_normal CPT0147200006 675d1852-5195-4286-93d7-992412f6183b_mirnaseq_gdc_realn.bam 401578235 BAM harmonized CPTAC3 035f65e6-f899-451c-a685-58c787be3efa 9c38bd703bb8ec887cfa31224c4ddfbb {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.miRNA-Seq.S10_L001_R1.A C3N-02426 LSCC miRNA-Seq tissue_normal CPT0147200006 181219_UNC31-K00269_0173_BHYGJJBBXX_TAGCTT_S10_L001_R1_001.unaln.bam 361688001 BAM S10_L001_R1 unaligned CPTAC3 e76e3d97-0c6b-417d-b6db-83f165990609 2fd9c8c222e1e9a7dcb6ee57fc8e5553 {"aliquot_tag": "ALQ_eafa7fc4", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.miRNA-Seq.S9_L001_R1.T C3N-02426 LSCC miRNA-Seq tumor CPT0147180007 181219_UNC31-K00269_0173_BHYGJJBBXX_GATCAG_S9_L001_R1_001.unaln.bam 201216681 BAM S9_L001_R1 unaligned CPTAC3 aa6e7564-d682-49e8-9dfa-3ac71c855d9f e2fa0e6bdfafefcbd4f4a846144ed421 {"aliquot_tag": "ALQ_2b19763d", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02426.miRNA-Seq.T.hg38 C3N-02426 LSCC miRNA-Seq tumor CPT0147180007 8e948cdc-b15f-4ea9-855d-34036fb52234_mirnaseq_gdc_realn.bam 221040104 BAM harmonized CPTAC3 ba8b2440-d911-4068-8edb-544defd4641f a2a3f9d0f1e47747954adf5d60719965 {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor"} -C3N-02426.RNA-Seq.chimeric.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.chimeric.gdc_realn.bam 36200505 BAM chimeric harmonized CPTAC3 58b5e36d-9f1c-4790-8359-490611023006 16f20465db552b14ecbdc4970942817f {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.RNA-Seq.chimeric.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.chimeric.gdc_realn.bam 25680492 BAM chimeric harmonized CPTAC3 37415724-65e6-4525-83b9-aab2b87abf2c d05578da0a1d3f1e5ee41bca03a91621 {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor"} -C3N-02426.RNA-Seq.genomic.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.genomic.gdc_realn.bam 9717814275 BAM genomic harmonized CPTAC3 1d861f87-97e3-48d5-9428-aba0f9bebb1e ad9a3aaca19c4ab2136a84426e15c9d0 {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.RNA-Seq.genomic.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.genomic.gdc_realn.bam 7574831581 BAM genomic harmonized CPTAC3 1b99b18b-6638-4027-b77f-38f5df312955 d857f2054333ea7382fbc81e77484ace {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor"} -C3N-02426.RNA-Seq.S25_L007_R1.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R1_001.fastq.gz 3387627512 FASTQ S25_L007_R1 unaligned CPTAC3 1c4b2b7b-1d51-4b3b-89af-2f8f2b40f915 0222f4bd713642c1d3a54b76c3e67711 {"aliquot_tag": "ALQ_2b19763d", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02426.RNA-Seq.S25_L007_R2.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R2_001.fastq.gz 3578674027 FASTQ S25_L007_R2 unaligned CPTAC3 e6a00b5b-fb4e-4f9a-b188-517f09f6a6ad 4d93590fc4935c2905dd8938f3089018 {"aliquot_tag": "ALQ_2b19763d", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02426.RNA-Seq.S26_L007_R1.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R1_001.fastq.gz 4514700457 FASTQ S26_L007_R1 unaligned CPTAC3 46c22361-74ec-42c0-ad46-43c4aba06e89 6ea1f6d4ce53f8abcb253f17c480553c {"aliquot_tag": "ALQ_eafa7fc4", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.RNA-Seq.S26_L007_R2.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R2_001.fastq.gz 4748763277 FASTQ S26_L007_R2 unaligned CPTAC3 8346022d-abce-41d8-a26b-ffc567871e59 92f6752b9c7e2949d24b04367d2792ee {"aliquot_tag": "ALQ_eafa7fc4", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.RNA-Seq.transcriptome.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.transcriptome.gdc_realn.bam 12366927083 BAM transcriptome harmonized CPTAC3 1c4ec1ea-de71-4ab8-b165-0a3ee67386a5 a852e44542f234cb0e8a38f5cd270ce1 {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.RNA-Seq.transcriptome.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.transcriptome.gdc_realn.bam 9674806663 BAM transcriptome harmonized CPTAC3 02271f9f-59de-411f-a901-dab7fbdba07d 0c1f94d2011551a067ce1fc68334624a {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor"} -C3N-02426.WGS.A C3N-02426 LSCC WGS tissue_normal CPT0147200009 CPT0147200009.WholeGenome.RP-1303.bam 69936875814 BAM aligned CPTAC3 6062123c-8635-4572-a011-6617f84bf64a 15f326bd9be2e7cc8f42964cc8575790 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.WGS.A.hg38 C3N-02426 LSCC WGS tissue_normal CPT0147200009 4e0695ea-e6c2-48c9-b9b3-11f2f2bfbc45_wgs_gdc_realn.bam 102087040407 BAM harmonized CPTAC3 38601758-4b1d-44e1-93f7-83ce52d07748 62e6af795bc8346fe257e1cad988ab54 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.WGS.N C3N-02426 LSCC WGS blood_normal CPT0147220004 CPT0147220004.WholeGenome.RP-1303.bam 64972657812 BAM aligned CPTAC3 b7ec3224-0417-4b98-9fb1-2718a89f4ad4 d9606c096309ae6c1b99438080a15337 {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02426.WGS.N.hg38 C3N-02426 LSCC WGS blood_normal CPT0147220004 6050187d-95a4-438f-8e26-77e9a3f19eae_wgs_gdc_realn.bam 93855791086 BAM harmonized CPTAC3 abc333f7-1456-4fb9-999b-4e8089e0dee3 b9dd9dd29bf502a8cb7bda439df7f24e {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02426.WGS.T C3N-02426 LSCC WGS tumor CPT0147180010 CPT0147180010.WholeGenome.RP-1303.bam 62363135349 BAM aligned CPTAC3 f876c1b5-440d-4713-b5b0-6517acb8a363 cdeab4375275b361bbdfd36a65b552bb {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor"} -C3N-02426.WGS.T.hg38 C3N-02426 LSCC WGS tumor CPT0147180010 700bad5b-96de-413e-bf46-3cdb5c72ad02_wgs_gdc_realn.bam 91131346394 BAM harmonized CPTAC3 6f689886-d8ac-4983-a5a4-2f2349c8da40 ccc39379cdbe98af81817ed91b44dd59 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor"} -C3N-02426.WXS.A C3N-02426 LSCC WXS tissue_normal CPT0147200009 CPT0147200009.WholeExome.RP-1303.bam 22686273462 BAM aligned CPTAC3 7b793f94-a474-4ff2-b673-030332eec2a7 02384e6f5a7a444128c839333542d1b6 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.WXS.A.hg38 C3N-02426 LSCC WXS tissue_normal CPT0147200009 4e0695ea-e6c2-48c9-b9b3-11f2f2bfbc45_wxs_gdc_realn.bam 31258377398 BAM harmonized CPTAC3 9df043e1-2846-49e6-8c38-8deb27d9d552 86da6fa7aae5664ab96d7b28563d0443 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02426.WXS.N C3N-02426 LSCC WXS blood_normal CPT0147220004 CPT0147220004.WholeExome.RP-1303.bam 22265204696 BAM aligned CPTAC3 d97c1ec9-b4b3-4ff1-b759-1b0b0b5c589d cf512737f74deae34740ec8025ba972c {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02426.WXS.N.hg38 C3N-02426 LSCC WXS blood_normal CPT0147220004 6050187d-95a4-438f-8e26-77e9a3f19eae_wxs_gdc_realn.bam 31017409374 BAM harmonized CPTAC3 7b9c2faa-b0be-4b61-b977-c34bcd75c9e9 95a37dea6559c438448268e2067923d5 {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal"} -C3N-02426.WXS.T C3N-02426 LSCC WXS tumor CPT0147180010 CPT0147180010.WholeExome.RP-1303.bam 23352169250 BAM aligned CPTAC3 7b61972f-30d1-4f62-89e3-5811e3e69ce0 b0e5321d819210827356037d6efa1051 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor"} -C3N-02426.WXS.T.hg38 C3N-02426 LSCC WXS tumor CPT0147180010 700bad5b-96de-413e-bf46-3cdb5c72ad02_wxs_gdc_realn.bam 31823894935 BAM harmonized CPTAC3 68b3a87d-f49f-48ae-be9c-d6edd25e780d 98c72b9e018f00ec3dabe35b868c6211 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor"} -C3N-02429.MethArray.Green.T C3N-02429 CCRCC Methylation_Array tumor CPT0147280010 203219650217_R07C01_Grn.idat 13676217 IDAT Green NA CPTAC3 83e6b238-4b37-45af-9d1e-7fee368b9184 acbdd4811d27d14341c5e43e0c6fa029 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor"} -C3N-02429.MethArray.Red.T C3N-02429 CCRCC Methylation_Array tumor CPT0147280010 203219650217_R07C01_Red.idat 13676217 IDAT Red NA CPTAC3 96e7ef62-d3b5-4106-bc6a-253530ac1185 f6ebf075d21942fc123d568741ada5f1 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor"} -C3N-02429.miRNA-Seq.A.hg38 C3N-02429 CCRCC miRNA-Seq tissue_normal CPT0147300006 50a60b30-fe26-4015-93cd-d085ad9791b9_mirnaseq_gdc_realn.bam 295785516 BAM harmonized CPTAC3 677b4a36-cfcf-4af0-9f21-92fcf9852faf fedd9cf16221fa42ffc12b6bfad57b87 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02429.miRNA-Seq.S20_L002_R1.A C3N-02429 CCRCC miRNA-Seq tissue_normal CPT0147300006 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L002_R1_001.unaln.bam 271658789 BAM S20_L002_R1 unaligned CPTAC3 21644d5c-73d9-4018-8c70-bb88ef8f0a15 27d6b3fb93fc3c2bcd0bee2fadceb8f5 {"aliquot_tag": "ALQ_21a6ac61", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02429.miRNA-Seq.S42_L005_R1.T C3N-02429 CCRCC miRNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0176_AHYGLVBBXX_TAATCG_S42_L005_R1_001.unaln.bam 196560236 BAM S42_L005_R1 unaligned CPTAC3 fcf9819e-476a-4cf9-8548-de89df79361b 8446f2db94cd6e7e970da6c416d319db {"aliquot_tag": "ALQ_ad8d0493", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02429.miRNA-Seq.T.hg38 C3N-02429 CCRCC miRNA-Seq tumor CPT0147280007 58aeeeca-03df-45a2-8685-3d7dadd47aba_mirnaseq_gdc_realn.bam 212208150 BAM harmonized CPTAC3 335cc426-e08f-41bc-865f-f302d148a9d1 688830952be4986f1f2b4fb504e48a73 {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor"} -C3N-02429.RNA-Seq.chimeric.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.chimeric.gdc_realn.bam 95841647 BAM chimeric harmonized CPTAC3 f465b094-1f54-4c22-a645-756091b46703 885b339e22d5e2bc4da4cfec3330b5f9 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02429.RNA-Seq.chimeric.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.chimeric.gdc_realn.bam 60019868 BAM chimeric harmonized CPTAC3 975f6ac9-f96d-4962-9d70-dc8c34957c95 81df1becfd259850dd38573295c6f0ac {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor"} -C3N-02429.RNA-Seq.genomic.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.genomic.gdc_realn.bam 9962072914 BAM genomic harmonized CPTAC3 2e2c4036-122e-4d92-a81b-3f1be0c7085c 773589d0fb37caa5ea38851c8d219879 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02429.RNA-Seq.genomic.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.genomic.gdc_realn.bam 8390892882 BAM genomic harmonized CPTAC3 6f09f414-e13b-4406-809e-b0e374b02f8c 557691d0d9990be40de77ce6fad3e80f {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor"} -C3N-02429.RNA-Seq.S19_L007_R1.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R1_001.fastq.gz 4345438144 FASTQ S19_L007_R1 unaligned CPTAC3 308c1f98-d5e0-4e59-904c-5b94de80d70d 167ff27c8767c71946f7b318285404fd {"aliquot_tag": "ALQ_21a6ac61", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02429.RNA-Seq.S19_L007_R2.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R2_001.fastq.gz 4741614628 FASTQ S19_L007_R2 unaligned CPTAC3 fb6e5799-3f00-4cdf-a04f-3d7aef5103de 07b1b2490701be7d15cac9c98ff4fe81 {"aliquot_tag": "ALQ_21a6ac61", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02429.RNA-Seq.S22_L006_R1.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4176818424 FASTQ S22_L006_R1 unaligned CPTAC3 d1aa949a-96ca-4221-907c-cf3fbc0b3ff9 c785aa658226036652516d18e89c197a {"aliquot_tag": "ALQ_ad8d0493", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02429.RNA-Seq.S22_L006_R2.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4167913017 FASTQ S22_L006_R2 unaligned CPTAC3 c4e77c72-3cc0-4ed1-95a0-0b77db5ae585 dfbe1b500166308063042e458829748b {"aliquot_tag": "ALQ_ad8d0493", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02429.RNA-Seq.transcriptome.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.transcriptome.gdc_realn.bam 11614986306 BAM transcriptome harmonized CPTAC3 c01f92ff-9bbf-4f88-872d-2c73516579d3 4bbc4ab3c3a188d69b57aefc9554ae76 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02429.RNA-Seq.transcriptome.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.transcriptome.gdc_realn.bam 11566892255 BAM transcriptome harmonized CPTAC3 c02a87c7-9d1b-4e60-89e5-2f1bfe3447e2 1c9aa2f786e031b4a224b354c7cfbb76 {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor"} -C3N-02429.WGS.N C3N-02429 CCRCC WGS blood_normal CPT0147310002 CPT0147310002.WholeGenome.RP-1303.bam 104664377280 BAM aligned CPTAC3 419a466d-4c5b-4c2f-a63a-08de046f67d5 b2649e01e9f146a747c0866f64f9d9f4 {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02429.WGS.N.hg38 C3N-02429 CCRCC WGS blood_normal CPT0147310002 408bb107-9884-4af4-88df-7e0012ce26d3_wgs_gdc_realn.bam 152219181292 BAM harmonized CPTAC3 a963bf8d-4bf5-4f8c-b9dd-f541dfde772d 2872dc1c1c7af84961a8de527c6db0c3 {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02429.WGS.T C3N-02429 CCRCC WGS tumor CPT0147280010 CPT0147280010.WholeGenome.RP-1303.bam 97608013192 BAM aligned CPTAC3 7540d74c-251a-415a-b123-5015a5c93e78 86b86f67a87134b12d3e7feb31cc499a {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor"} -C3N-02429.WGS.T.hg38 C3N-02429 CCRCC WGS tumor CPT0147280010 6751ad3a-d188-444b-bed2-ff769ce17c6a_wgs_gdc_realn.bam 143863227673 BAM harmonized CPTAC3 e786253e-9076-4682-abfe-dc58ace32afc ab0cfda14c87cc4eda9e63fabf120603 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor"} -C3N-02429.WXS.N C3N-02429 CCRCC WXS blood_normal CPT0147310002 CPT0147310002.WholeExome.RP-1303.bam 21670994290 BAM aligned CPTAC3 e09668c2-f8ae-420a-8286-2574631fa6f0 16dbf885da0f90c6df77be88a58e778b {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02429.WXS.N.hg38 C3N-02429 CCRCC WXS blood_normal CPT0147310002 408bb107-9884-4af4-88df-7e0012ce26d3_wxs_gdc_realn.bam 29788929191 BAM harmonized CPTAC3 6c917e82-377a-4b48-8e0d-201c4c903b4b 34ce493cb3cac14159110fd631de1e66 {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02429.WXS.T C3N-02429 CCRCC WXS tumor CPT0147280010 CPT0147280010.WholeExome.RP-1303.bam 23728157719 BAM aligned CPTAC3 17344faf-a3df-4772-8680-0b21616314f5 0702e09f82a9d25f6585b8e65c258848 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor"} -C3N-02429.WXS.T.hg38 C3N-02429 CCRCC WXS tumor CPT0147280010 6751ad3a-d188-444b-bed2-ff769ce17c6a_wxs_gdc_realn.bam 33485301863 BAM harmonized CPTAC3 fdfcfcdf-afad-4cd6-8b53-2acbe13d70b8 3dd0547c1cf626edf97745355fed0434 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor"} -C3N-02431.MethArray.Green.A C3N-02431 CCRCC Methylation_Array tissue_normal CPT0183350006 204930640122_R04C01_Grn.idat 13677965 IDAT Green NA CPTAC3 09afe886-543b-445b-a735-c6e5f38c12b6 c0786a22deeaf9f9a80fc21f30bc4705 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.MethArray.Green.T C3N-02431 CCRCC Methylation_Array tumor CPT0183360007 203219670122_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c95044df-ed84-4faf-9da0-8c4eed7b56ab 5a4d16503cc4b7f0b84454897e6791c1 {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor"} -C3N-02431.MethArray.Red.A C3N-02431 CCRCC Methylation_Array tissue_normal CPT0183350006 204930640122_R04C01_Red.idat 13677965 IDAT Red NA CPTAC3 15017efc-bee0-4eaa-bbcb-3d4172d05c6c 1983841a63fed727ac1f633b88a6b0d8 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.MethArray.Red.T C3N-02431 CCRCC Methylation_Array tumor CPT0183360007 203219670122_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 55dbdf4a-b23b-40f1-a99c-f5bae598825f 434ecaad5ed373615bf823a1e27e8eae {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor"} -C3N-02431.miRNA-Seq.A.hg38 C3N-02431 CCRCC miRNA-Seq tissue_normal CPT0183350009 ccf62edc-c023-44eb-abbb-537b657b9efa_mirnaseq_gdc_realn.bam 264827074 BAM harmonized CPTAC3 d4ebc59e-649d-4e5b-a8f1-ede048d0dd5c 02aa7f0e91af8edede497ffcffee4d95 {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.miRNA-Seq.S2_L006_R1.A C3N-02431 CCRCC miRNA-Seq tissue_normal CPT0183350009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L006_R1_001.unaln.bam 242893179 BAM S2_L006_R1 unaligned CPTAC3 c8be33e4-16cd-44ce-90c0-b9133de880af 2551e45d8d3aae757424b4b70c165a38 {"aliquot_tag": "ALQ_da190fdc", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.miRNA-Seq.S39_L005_R1.T C3N-02431 CCRCC miRNA-Seq tumor CPT0183360010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L005_R1_001.unaln.bam 222831874 BAM S39_L005_R1 unaligned CPTAC3 1ff285a5-cd88-468d-a620-556f158b65b8 e25b2cd5a7aeb20263c253f37cdfd304 {"aliquot_tag": "ALQ_fd7efce9", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02431.miRNA-Seq.T.hg38 C3N-02431 CCRCC miRNA-Seq tumor CPT0183360010 0aab963a-cc49-47b3-af0d-13ae08494949_mirnaseq_gdc_realn.bam 246190441 BAM harmonized CPTAC3 eed8656f-8c9c-46ef-9171-2c9f1861fdb7 a57dd602cd8e8f561239892069f093c5 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor"} -C3N-02431.RNA-Seq.chimeric.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.chimeric.gdc_realn.bam 44971291 BAM chimeric harmonized CPTAC3 aaa62b87-6ace-46b4-8f41-f6e1c4e5db78 d183a3b72a3a8e96a403a2e49dfe1a7f {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.RNA-Seq.chimeric.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.chimeric.gdc_realn.bam 36451586 BAM chimeric harmonized CPTAC3 85d9c7a3-b7a1-430e-b1b3-8bce88420e4c a6f3f98755974d36ea5c886622bf1bc6 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor"} -C3N-02431.RNA-Seq.genomic.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.genomic.gdc_realn.bam 9472440199 BAM genomic harmonized CPTAC3 8b5b3272-62d2-4e6e-9c4c-ce9b475ed314 73910ab62675543f4fad2517b61af3ce {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.RNA-Seq.genomic.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.genomic.gdc_realn.bam 7481039104 BAM genomic harmonized CPTAC3 26ee70d9-6bf0-41fa-be5d-d89f88974c41 ced30efa8c2f45a218e15c47ee414340 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor"} -C3N-02431.RNA-Seq.S6_L002_R1.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R1_001.fastq.gz 4438705682 FASTQ S6_L002_R1 unaligned CPTAC3 4469beff-be49-4f84-b01e-6755fb50d1dc 041bc6802c8fc7f40c83b0cb248663e7 {"aliquot_tag": "ALQ_da190fdc", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.RNA-Seq.S6_L002_R2.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R2_001.fastq.gz 4303117253 FASTQ S6_L002_R2 unaligned CPTAC3 e7ab8afe-fefa-48b6-a8bf-b9df7fc71c3a ba1bc4dcb52f0ac3dc9d13e184507643 {"aliquot_tag": "ALQ_da190fdc", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.RNA-Seq.S8_L008_R1.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R1_001.fastq.gz 3564454984 FASTQ S8_L008_R1 unaligned CPTAC3 5277ce10-1648-495b-9c1f-1bafacfc0edf eb201a20f733b9dd3c1e013b6c60daaa {"aliquot_tag": "ALQ_fd7efce9", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02431.RNA-Seq.S8_L008_R2.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R2_001.fastq.gz 3801920665 FASTQ S8_L008_R2 unaligned CPTAC3 b2af3af4-1c59-4102-87cd-19bc734654e7 ceddffc7a58b489e395b373946b0417f {"aliquot_tag": "ALQ_fd7efce9", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02431.RNA-Seq.transcriptome.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.transcriptome.gdc_realn.bam 10029244047 BAM transcriptome harmonized CPTAC3 3481741b-2c65-48b5-84fd-52de993e85d0 e2dc849d1199da81cb9865930840d68d {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.RNA-Seq.transcriptome.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.transcriptome.gdc_realn.bam 10100512282 BAM transcriptome harmonized CPTAC3 77118153-1b15-400c-9186-820b8543977a feb9ddc2adafd2d95a11e98cb59e5455 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor"} -C3N-02431.WGS.N C3N-02431 CCRCC WGS blood_normal CPT0183410002 CPT0183410002.WholeGenome.RP-1303.bam 99924278854 BAM aligned CPTAC3 3ce92c10-4c64-4c03-b0b8-1add86e635b3 5014bec9b0f1b82483019e12df879d3d {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02431.WGS.N.hg38 C3N-02431 CCRCC WGS blood_normal CPT0183410002 8836c002-6b85-4c30-97cf-8ba51924f07a_wgs_gdc_realn.bam 143220227850 BAM harmonized CPTAC3 9e828b23-4d5a-4c78-bee2-e1a6f93ebb64 f67bdd049ba43970593d3721724e4ff3 {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02431.WGS.T C3N-02431 CCRCC WGS tumor CPT0183360007 CPT0183360007.WholeGenome.RP-1303.bam 103210485964 BAM aligned CPTAC3 d2705e47-74d5-413a-90d8-53e1aa116c61 fa4b91a4a6dbb554be21fe87bf262960 {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor"} -C3N-02431.WGS.T.hg38 C3N-02431 CCRCC WGS tumor CPT0183360007 8b339bfe-4e79-48f2-9a3f-b5cc37487039_wgs_gdc_realn.bam 153312243819 BAM harmonized CPTAC3 1de39554-9227-4989-a6fb-29c672b31a84 5a2d82ed482696607ab97bc6d29d25ea {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor"} -C3N-02431.WXS.A C3N-02431 CCRCC WXS tissue_normal CPT0183350006 CPT0183350006.WholeExome.RP-1303.bam 20825809534 BAM aligned CPTAC3 47cfc421-25dd-4566-9eea-c404a8a6d50a 3e461a14ac8b4788c7b57e7979c2ad43 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.WXS.A.hg38 C3N-02431 CCRCC WXS tissue_normal CPT0183350006 e51e75b2-b6f1-4bcb-b073-c89e867e1fa8_wxs_gdc_realn.bam 28178151784 BAM harmonized CPTAC3 c6123edd-473e-4911-9987-6744d48bf546 368d56a210e60e6e9f089e3c4ba49f65 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02431.WXS.N C3N-02431 CCRCC WXS blood_normal CPT0183410002 CPT0183410002.WholeExome.RP-1303.bam 21622082131 BAM aligned CPTAC3 340728a9-856e-4ab0-9f72-5d989d0ef278 0e76ed0cd2b41e3414c65f40fc00d783 {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02431.WXS.N.hg38 C3N-02431 CCRCC WXS blood_normal CPT0183410002 8836c002-6b85-4c30-97cf-8ba51924f07a_wxs_gdc_realn.bam 29401187890 BAM harmonized CPTAC3 2d0211fd-e6af-4f21-a1b3-5bcb521a63cd 9dbe4e535b522542538fcf249cca0ff8 {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02431.WXS.T C3N-02431 CCRCC WXS tumor CPT0183360007 CPT0183360007.WholeExome.RP-1303.bam 26954286744 BAM aligned CPTAC3 0af54729-5123-4059-8543-5a1f3e498573 ed5fd24c0be340cbae8a932697f1af6b {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor"} -C3N-02431.WXS.T.hg38 C3N-02431 CCRCC WXS tumor CPT0183360007 8b339bfe-4e79-48f2-9a3f-b5cc37487039_wxs_gdc_realn.bam 36657940360 BAM harmonized CPTAC3 c43c868f-ee0f-488a-8447-55ed1826337d f058344761151983223506a632491014 {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor"} -C3N-02433.MethArray.Green.A C3N-02433 LUAD Methylation_Array tissue_normal CPT0147400009 203219670118_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 20d18711-adc0-4011-aa52-252174197eb9 4052b89e45be74de23ee863011199ffb {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.MethArray.Green.T C3N-02433 LUAD Methylation_Array tumor CPT0147380010 203219720203_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6374ea29-d70f-40da-b1d8-24876a356599 9374eaeececc958034cfd4ac14ee37ac {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor"} -C3N-02433.MethArray.Red.A C3N-02433 LUAD Methylation_Array tissue_normal CPT0147400009 203219670118_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 4fbe6be2-0ba2-4a3a-9346-0ba35a23be4a d9f145058ae05af647562a6414a5fb7e {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.MethArray.Red.T C3N-02433 LUAD Methylation_Array tumor CPT0147380010 203219720203_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 2d4440ce-b175-4396-92ed-8c1ef7d18410 0f58388e2eba5c5c711bdf8405605d2c {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor"} -C3N-02433.miRNA-Seq.A.hg38 C3N-02433 LUAD miRNA-Seq tissue_normal CPT0147400006 a002991b-9dec-4b7f-8153-9ee7756e95fc_mirnaseq_gdc_realn.bam 286815118 BAM harmonized CPTAC3 10f530f0-a843-401d-8c5f-da4dffb3828c 3453e92fcda5898fb2b4121323fc0276 {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.miRNA-Seq.S16_L003_R1.T C3N-02433 LUAD miRNA-Seq tumor CPT0147380007 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L003_R1_001.unaln.bam 254630544 BAM S16_L003_R1 unaligned CPTAC3 e205afe2-1e83-4390-8e34-9822b6c1258c 8fa03367bf5c20a20174b948071d9c5c {"aliquot_tag": "ALQ_66d1d736", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02433.miRNA-Seq.S7_L003_R1.A C3N-02433 LUAD miRNA-Seq tissue_normal CPT0147400006 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L003_R1_001.unaln.bam 260059873 BAM S7_L003_R1 unaligned CPTAC3 45c1088d-55a2-43ac-a76d-c0b12d93f7b6 30a3696e28a1464285da5caf5ae1a6df {"aliquot_tag": "ALQ_3ca39cd9", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.miRNA-Seq.T.hg38 C3N-02433 LUAD miRNA-Seq tumor CPT0147380007 ae6e9617-2369-4201-a9f1-0fbe5e1da88e_mirnaseq_gdc_realn.bam 278051206 BAM harmonized CPTAC3 0f05feff-c57e-4af1-97db-512151c9c2f2 8f8bfdc76b1050c3ba31efee18798ce9 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor"} -C3N-02433.RNA-Seq.chimeric.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.chimeric.gdc_realn.bam 116363936 BAM chimeric harmonized CPTAC3 7801774d-87a9-48c4-805e-7af49bee1d7b b52340c6e19c3b2551cc56e58b3b89bd {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.RNA-Seq.chimeric.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.chimeric.gdc_realn.bam 47217725 BAM chimeric harmonized CPTAC3 f3b82540-3dc3-4e05-8da8-e58311940168 b53773f739e2bf67588c3bbba1dff1b8 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor"} -C3N-02433.RNA-Seq.genomic.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.genomic.gdc_realn.bam 9735666765 BAM genomic harmonized CPTAC3 74d92f06-5512-440e-82a2-e7208877560a 2852b96c1315cdda2d250528f5e350e0 {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.RNA-Seq.genomic.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.genomic.gdc_realn.bam 9701309554 BAM genomic harmonized CPTAC3 34a0b54d-59c8-4530-895e-5c8bd1be2dd9 84b7eb5692cfbf39549c58d362b9e324 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor"} -C3N-02433.RNA-Seq.S1_L007_R1.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R1_001.fastq.gz 4590905055 FASTQ S1_L007_R1 unaligned CPTAC3 97451b25-7512-433e-ab1b-bedbfb04a884 754782571390fd60c588b625ac4cf88f {"aliquot_tag": "ALQ_66d1d736", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02433.RNA-Seq.S1_L007_R2.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R2_001.fastq.gz 4717482758 FASTQ S1_L007_R2 unaligned CPTAC3 a123cddc-0050-460a-a8b6-4c9d24a48d57 507c950c68d35b42e7b29bd161729c8c {"aliquot_tag": "ALQ_66d1d736", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02433.RNA-Seq.S2_L001_R1.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R1_001.fastq.gz 4452697529 FASTQ S2_L001_R1 unaligned CPTAC3 bc1582f7-fa85-430f-beff-420f015df598 c6c9282d5f80c6b0204b7b6bfb643b2f {"aliquot_tag": "ALQ_3ca39cd9", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.RNA-Seq.S2_L001_R2.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R2_001.fastq.gz 4941418364 FASTQ S2_L001_R2 unaligned CPTAC3 7798fd3f-e078-4519-804f-9b41b79de825 bb298fa7cb4f81b71ac8aa7d385bc247 {"aliquot_tag": "ALQ_3ca39cd9", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.RNA-Seq.transcriptome.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.transcriptome.gdc_realn.bam 11606713666 BAM transcriptome harmonized CPTAC3 9640cc2b-8e44-429f-9108-df9beaf55c0e 1efe0a8989e4fbfac95cca3d57a7435e {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.RNA-Seq.transcriptome.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.transcriptome.gdc_realn.bam 11860345844 BAM transcriptome harmonized CPTAC3 756fe12e-1374-407c-ad03-8253c1651f7f af49ddc700f91719ef0e46f1ff1e4158 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor"} -C3N-02433.WGS.A C3N-02433 LUAD WGS tissue_normal CPT0147400009 CPT0147400009.WholeGenome.RP-1303.bam 60810496752 BAM aligned CPTAC3 0ee0f175-841c-453f-8a2c-1cebb4b25a9e a7db15ce0f5aaa233a1f89f7e0ddb074 {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.WGS.A.hg38 C3N-02433 LUAD WGS tissue_normal CPT0147400009 0f0b6fff-90e7-4b7a-9400-6f9a623eac81_wgs_gdc_realn.bam 89167545293 BAM harmonized CPTAC3 655eda39-6341-4047-9fa5-cb43a4355b30 ad8049af9bb42faf69b1d647ba5ff34b {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.WGS.N C3N-02433 LUAD WGS blood_normal CPT0147410002 CPT0147410002.WholeGenome.RP-1303.bam 56363563780 BAM aligned CPTAC3 b143f920-a2c6-4419-936c-9063fc69d065 75952eddf21cbc0649230a8155ba1f13 {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal"} -C3N-02433.WGS.N.hg38 C3N-02433 LUAD WGS blood_normal CPT0147410002 075c856b-bc17-431b-9692-d02ec4b39a32_wgs_gdc_realn.bam 81719235650 BAM harmonized CPTAC3 bf71e4a2-7f68-4333-8f25-0c00054bd995 194675c2af044b6ab96b0d8c8aaea9bd {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal"} -C3N-02433.WGS.T C3N-02433 LUAD WGS tumor CPT0147380010 CPT0147380010.WholeGenome.RP-1303.bam 70563932947 BAM aligned CPTAC3 544de398-0400-44a1-b110-25620079366f 9f9bdf89d49e95adb64c79dde97f7ac0 {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor"} -C3N-02433.WGS.T.hg38 C3N-02433 LUAD WGS tumor CPT0147380010 4285bae5-67c5-466a-b08b-ddc845151568_wgs_gdc_realn.bam 101989737101 BAM harmonized CPTAC3 9ab2c762-ea9f-4e33-8e55-44526be3f958 ffefd4d845eb092ebd27a1154b0f1749 {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor"} -C3N-02433.WXS.A C3N-02433 LUAD WXS tissue_normal CPT0147400009 CPT0147400009.WholeExome.RP-1303.bam 27619393975 BAM aligned CPTAC3 848e9171-7204-4932-8d41-fbbcb211b10b 140f35a4860688d751d6dcbaf67ece9f {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.WXS.A.hg38 C3N-02433 LUAD WXS tissue_normal CPT0147400009 0f0b6fff-90e7-4b7a-9400-6f9a623eac81_wxs_gdc_realn.bam 37363671564 BAM harmonized CPTAC3 adff7c9b-f80e-4399-a930-cbb90652ecce 1c79f3bef3afb7c2c454d036c92b417d {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02433.WXS.N C3N-02433 LUAD WXS blood_normal CPT0147410002 CPT0147410002.WholeExome.RP-1303.bam 23304067464 BAM aligned CPTAC3 c3f9791e-8560-4a15-9f12-7eb30c7d8c41 0b067ce68fcde510ce14886425b979c6 {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal"} -C3N-02433.WXS.N.hg38 C3N-02433 LUAD WXS blood_normal CPT0147410002 075c856b-bc17-431b-9692-d02ec4b39a32_wxs_gdc_realn.bam 31925080780 BAM harmonized CPTAC3 36ff8ff4-7bef-49f9-a8f8-b0843c0b7241 a13638455a358b0bc1eafd52d85a53ac {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal"} -C3N-02433.WXS.T C3N-02433 LUAD WXS tumor CPT0147380010 CPT0147380010.WholeExome.RP-1303.bam 27041522405 BAM aligned CPTAC3 a418b26e-3ee8-4409-b95b-98f31d4806af 0f343270bb29737801913482f722f65b {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor"} -C3N-02433.WXS.T.hg38 C3N-02433 LUAD WXS tumor CPT0147380010 4285bae5-67c5-466a-b08b-ddc845151568_wxs_gdc_realn.bam 37286723079 BAM harmonized CPTAC3 dcd1b30f-3f83-441b-8073-9bc5c9cae1cb ceb1b7217c9a25844a63912c3932bd59 {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor"} -C3N-02434.MethArray.Green.A C3N-02434 LSCC Methylation_Array tissue_normal CPT0115860006 203219640068_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b2f6b6d9-1c1f-4d66-8b5d-8f43337182e7 dbb953bb34d0d056103a96fb4f4dca76 {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.MethArray.Green.T C3N-02434 LSCC Methylation_Array tumor CPT0115830009 203219650202_R02C01_Grn.idat 13676218 IDAT Green NA CPTAC3 c1fa8649-2cc2-46a2-94ce-481bfb0a9b0b d4c5060e9939f307410ee847c095c26c {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor"} -C3N-02434.MethArray.Red.A C3N-02434 LSCC Methylation_Array tissue_normal CPT0115860006 203219640068_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 1993af3c-fd3b-4065-8d3a-12c1e3fbd11c 7b4f76f6ebe6824a799eb747f319aa9d {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.MethArray.Red.T C3N-02434 LSCC Methylation_Array tumor CPT0115830009 203219650202_R02C01_Red.idat 13676218 IDAT Red NA CPTAC3 b7507e7f-2c72-4957-bb95-ceff9d87e952 c40e4c02d7ec57c859559b881125f40b {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor"} -C3N-02434.miRNA-Seq.A.hg38 C3N-02434 LSCC miRNA-Seq tissue_normal CPT0115860009 173cdd5b-48a1-4eab-91af-1a2afa6f0450_mirnaseq_gdc_realn.bam 236544879 BAM harmonized CPTAC3 db1ba857-ef81-4567-b68a-870e10cd22c3 808a323d735956565508c9449dd4d5c9 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.miRNA-Seq.S31_L002_R1.A C3N-02434 LSCC miRNA-Seq tissue_normal CPT0115860009 181219_UNC31-K00269_0173_BHYGJJBBXX_CACTCA_S31_L002_R1_001.unaln.bam 208451629 BAM S31_L002_R1 unaligned CPTAC3 4283cabb-875f-4d28-8ba2-41acb74550a3 0a6091b3bb485a40bf716453c30c9468 {"aliquot_tag": "ALQ_8be1abde", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.miRNA-Seq.S3_L001_R1.T C3N-02434 LSCC miRNA-Seq tumor CPT0115830006 181219_UNC31-K00269_0173_BHYGJJBBXX_TTAGGC_S3_L001_R1_001.unaln.bam 235405525 BAM S3_L001_R1 unaligned CPTAC3 11b345be-baf8-4421-b082-c80e71e831dc 3a1a7c4de5b7fafd0fd610231b3a033a {"aliquot_tag": "ALQ_d3be393f", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02434.miRNA-Seq.T.hg38 C3N-02434 LSCC miRNA-Seq tumor CPT0115830006 8a40d1e7-758b-4ecc-92db-78a63b1d3645_mirnaseq_gdc_realn.bam 265913623 BAM harmonized CPTAC3 b7c36fef-5fb8-48bd-8def-f4191a08bb76 40bf747bd064f04f863eca0afe7ebdf9 {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor"} -C3N-02434.RNA-Seq.chimeric.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.chimeric.gdc_realn.bam 27492820 BAM chimeric harmonized CPTAC3 720766b3-06ee-4cdb-b8e8-ae9a2526283e 03636166c4fd752dc2c32a6cb22261c4 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.RNA-Seq.chimeric.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.chimeric.gdc_realn.bam 30917503 BAM chimeric harmonized CPTAC3 5dc82dff-53fa-4d0d-8913-8ebe3dfcbee8 a9f2b536356532b12cbdfc826f91b5d6 {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor"} -C3N-02434.RNA-Seq.genomic.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.genomic.gdc_realn.bam 7566054442 BAM genomic harmonized CPTAC3 451d87b7-f03b-42c7-b119-df1a6c423513 a5f69028d9c67e2649ec6e4d372dac43 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.RNA-Seq.genomic.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.genomic.gdc_realn.bam 9683575190 BAM genomic harmonized CPTAC3 02c3a9e4-bf37-4836-bd2f-ce1a821b95c6 221641d5410c4dab38532edbefa8ef6f {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor"} -C3N-02434.RNA-Seq.S16_L004_R1.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3619815406 FASTQ S16_L004_R1 unaligned CPTAC3 afc88f36-8755-4d30-9c5b-1522cfc1b664 485da95b02f366007256f4db8f88aeaa {"aliquot_tag": "ALQ_8be1abde", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.RNA-Seq.S16_L004_R2.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 3839334209 FASTQ S16_L004_R2 unaligned CPTAC3 791437f7-5d32-4ba3-9cf7-28b1c7a7efa2 fab0843e15b025db953681f4f59e0d82 {"aliquot_tag": "ALQ_8be1abde", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.RNA-Seq.S17_L005_R1.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R1_001.fastq.gz 4325041872 FASTQ S17_L005_R1 unaligned CPTAC3 e4f87c94-a026-4efc-9fcb-3a986805b519 deb9bfc7b96c22c4954380626a70dc08 {"aliquot_tag": "ALQ_d3be393f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02434.RNA-Seq.S17_L005_R2.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4503446918 FASTQ S17_L005_R2 unaligned CPTAC3 4f26ed28-b994-4b20-bc67-806e8a36a1ca b614556634ba515bf018728db2cefbb7 {"aliquot_tag": "ALQ_d3be393f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02434.RNA-Seq.transcriptome.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.transcriptome.gdc_realn.bam 9838849058 BAM transcriptome harmonized CPTAC3 13d35420-5c82-4b8b-a04b-04d1786f3b90 b05c049b230ff06963605f24dc743455 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.RNA-Seq.transcriptome.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.transcriptome.gdc_realn.bam 12807130496 BAM transcriptome harmonized CPTAC3 f344b546-167e-4926-852f-76fa082f5037 51cfc33368c7afe256a23ba6c50c716e {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor"} -C3N-02434.WGS.A C3N-02434 LSCC WGS tissue_normal CPT0115860006 CPT0115860006.WholeGenome.RP-1303.bam 56442469056 BAM aligned CPTAC3 884db3a4-1c23-45cd-9296-abba5477c356 8e5a512c9bf1140914cfa9eab50fc6da {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.WGS.A.hg38 C3N-02434 LSCC WGS tissue_normal CPT0115860006 55cb1ac6-fd2d-4494-845d-b1930d004a3a_wgs_gdc_realn.bam 82265321409 BAM harmonized CPTAC3 f509c792-9a9d-466d-bff0-1386da7a7c6a 7ab56c908c80ab1098096c262bb43eec {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.WGS.N C3N-02434 LSCC WGS blood_normal CPT0116430002 CPT0116430002.WholeGenome.RP-1303.bam 58549557265 BAM aligned CPTAC3 94449f3a-4121-4a81-8e11-e42c53223a5d 696bc93faad3be8a08f05e862c28f2e7 {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02434.WGS.N.hg38 C3N-02434 LSCC WGS blood_normal CPT0116430002 e7171412-d3ad-4793-ad31-101dab6a7d2e_wgs_gdc_realn.bam 85325708618 BAM harmonized CPTAC3 ac0f592d-1ce6-4cc2-afb3-0484a93af603 74fbaf0a73f144afede9625cfad9b5f5 {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02434.WGS.T C3N-02434 LSCC WGS tumor CPT0115830009 CPT0115830009.WholeGenome.RP-1303.bam 61349367716 BAM aligned CPTAC3 c5da433a-e6ac-4f82-be7f-2b8c97e29058 9200e15a84ba48e7422a871d15d5c8ca {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor"} -C3N-02434.WGS.T.hg38 C3N-02434 LSCC WGS tumor CPT0115830009 3b07b204-2fa5-46a2-8b88-ebf0c39b0f03_wgs_gdc_realn.bam 88801156431 BAM harmonized CPTAC3 951fe783-47bd-48cd-9e81-3140735b74e4 031d496aea8f8017431562b93b1bce06 {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor"} -C3N-02434.WXS.A C3N-02434 LSCC WXS tissue_normal CPT0115860006 CPT0115860006.WholeExome.RP-1303.bam 22221166982 BAM aligned CPTAC3 6cc0dcf1-1736-4b62-b29d-55589f41e955 950fa5612a3e617a25ad9a80f1afbf9b {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.WXS.A.hg38 C3N-02434 LSCC WXS tissue_normal CPT0115860006 55cb1ac6-fd2d-4494-845d-b1930d004a3a_wxs_gdc_realn.bam 30349442095 BAM harmonized CPTAC3 52e818d3-6000-468f-855a-860d9e004a4f e375564b5541dd66f8d783986c8ba0e9 {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02434.WXS.N C3N-02434 LSCC WXS blood_normal CPT0116430002 CPT0116430002.WholeExome.RP-1303.bam 24762007502 BAM aligned CPTAC3 4198569a-f447-4a92-a75c-aa52f7c0499f e6907e55d8f691118c35196ce31b1136 {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02434.WXS.N.hg38 C3N-02434 LSCC WXS blood_normal CPT0116430002 e7171412-d3ad-4793-ad31-101dab6a7d2e_wxs_gdc_realn.bam 34440493529 BAM harmonized CPTAC3 af765aa7-07a6-4bec-8f12-8e0a6d0c193e c5ecc51a7bee0aa9df0521aafbec730d {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02434.WXS.T C3N-02434 LSCC WXS tumor CPT0115830009 CPT0115830009.WholeExome.RP-1303.bam 28372670488 BAM aligned CPTAC3 c52f5015-b057-47b5-8f73-042f84e5b5b1 3cea9aed5c878fc5c077b8c77c8e7449 {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor"} -C3N-02434.WXS.T.hg38 C3N-02434 LSCC WXS tumor CPT0115830009 3b07b204-2fa5-46a2-8b88-ebf0c39b0f03_wxs_gdc_realn.bam 39600416463 BAM harmonized CPTAC3 60b1a4c5-7b90-40bd-8a01-c67d2bcb29aa 7565237ac773a7edda1cee45d6187c29 {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor"} -C3N-02435.MethArray.Green.A C3N-02435 LSCC Methylation_Array tissue_normal CPT0241210006 203219650100_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5f177b19-ab50-408e-a413-bacb12c53cb3 6acb911f80d0b22c49a85e94ab1ce58e {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.MethArray.Green.T C3N-02435 LSCC Methylation_Array tumor CPT0241170006 203219650221_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8ce26bdc-7a50-47bf-9d7b-d6081c5c1fa8 a3c68eadc0493edd1794551f8d727782 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor"} -C3N-02435.MethArray.Red.A C3N-02435 LSCC Methylation_Array tissue_normal CPT0241210006 203219650100_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 faa07d5f-f7c2-46b9-8647-6cca2cfbcd6d 8e3f78ac8e870b1b1901873a7d27d1d1 {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.MethArray.Red.T C3N-02435 LSCC Methylation_Array tumor CPT0241170006 203219650221_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 a0713c08-73d6-465a-9a1d-1d85a7c03550 2fad21b0c723b61eca17a922deb3bb0f {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor"} -C3N-02435.miRNA-Seq.A.hg38 C3N-02435 LSCC miRNA-Seq tissue_normal CPT0241210009 6b0b56b1-c48f-48b2-a88b-b1ce05a81c46_mirnaseq_gdc_realn.bam 233009484 BAM harmonized CPTAC3 2641b8f2-35c8-4c37-8b56-f634a099cd29 b7b04a1044158cdca754a7be996d66d6 {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.miRNA-Seq.S27_L004_R1.A C3N-02435 LSCC miRNA-Seq tissue_normal CPT0241210009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGTACG_S27_L004_R1_001.unaln.bam 212207280 BAM S27_L004_R1 unaligned CPTAC3 30a19209-3e49-4213-9511-d2abecf6a8b5 1d23dfc2e5ff33f5597887616e42f9b3 {"aliquot_tag": "ALQ_1d78421a", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.miRNA-Seq.S28_L004_R1.T C3N-02435 LSCC miRNA-Seq tumor CPT0241170009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTTTCG_S28_L004_R1_001.unaln.bam 154164749 BAM S28_L004_R1 unaligned CPTAC3 2c8cba02-fd00-455e-b546-be85bb4b9d45 cc391d1af84019e4d01a131ae74a65ea {"aliquot_tag": "ALQ_14acc514", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02435.miRNA-Seq.T.hg38 C3N-02435 LSCC miRNA-Seq tumor CPT0241170009 d02b2b71-63c2-4fe5-a4b6-3d52de3a9c50_mirnaseq_gdc_realn.bam 168841124 BAM harmonized CPTAC3 3d416495-ceff-4c79-9266-79a62e270d3a 4ae0fa5e5d14f4c8be27d7bcf7e6008d {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor"} -C3N-02435.RNA-Seq.chimeric.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.chimeric.gdc_realn.bam 302038237 BAM chimeric harmonized CPTAC3 aa503442-8865-48ba-b7e9-0d03019e5b7d e6a77420051fc7f62bb6ecda53e26f6e {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.RNA-Seq.chimeric.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.chimeric.gdc_realn.bam 296778463 BAM chimeric harmonized CPTAC3 0ed107db-fa7f-4ba7-be1c-9c820819fb81 ea8d0ac35894fff911922ffc563a7c16 {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor"} -C3N-02435.RNA-Seq.genomic.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.genomic.gdc_realn.bam 9269548211 BAM genomic harmonized CPTAC3 b8b2ea67-f831-4e36-bfbe-014adcfd8b5c 248c249e23d510b429e93477b0aa270d {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.RNA-Seq.genomic.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.genomic.gdc_realn.bam 9375784424 BAM genomic harmonized CPTAC3 ce605d0c-e456-471e-8286-04a112a9b1cd 92db97c45307a1e25e38d37a9fbc6710 {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor"} -C3N-02435.RNA-Seq.S12_L003_R1.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R1_001.fastq.gz 4004442576 FASTQ S12_L003_R1 unaligned CPTAC3 2ae41c77-a9e6-4e72-960c-79883d3f8a7a 5b3614b25db15b58e485aa94471a5961 {"aliquot_tag": "ALQ_14acc514", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02435.RNA-Seq.S12_L003_R2.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R2_001.fastq.gz 4382828351 FASTQ S12_L003_R2 unaligned CPTAC3 e1bc8ef8-d51f-4002-825a-29d546892fb6 ad8c8a496b599b819e553659a721cb01 {"aliquot_tag": "ALQ_14acc514", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02435.RNA-Seq.S14_L004_R1.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3993610118 FASTQ S14_L004_R1 unaligned CPTAC3 059287d2-82b3-416e-80f3-9b010e3a1ad9 10aa3cc299ab8b37d10535a769901e59 {"aliquot_tag": "ALQ_1d78421a", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.RNA-Seq.S14_L004_R2.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 4446131135 FASTQ S14_L004_R2 unaligned CPTAC3 62eb563b-67c2-4331-93da-f1b672fcc577 72721d3d85227577e73186f9f1406815 {"aliquot_tag": "ALQ_1d78421a", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.RNA-Seq.transcriptome.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.transcriptome.gdc_realn.bam 8904478202 BAM transcriptome harmonized CPTAC3 31785b3a-0f70-4a68-a16c-9a052ef03d50 d812ab5f765e5c6966d54d25b96b09b5 {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.RNA-Seq.transcriptome.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.transcriptome.gdc_realn.bam 8502010166 BAM transcriptome harmonized CPTAC3 b825a72a-b9d8-46ff-a002-93d2be1ba0b6 3b34101e567cd2f9e7cfb4157de80ce3 {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor"} -C3N-02435.WGS.N C3N-02435 LSCC WGS blood_normal CPT0241820002 CPT0241820002.WholeGenome.RP-1303.bam 133068421000 BAM aligned CPTAC3 5cf68ed0-ccaf-4ba7-b534-62d2978fbba1 b9dde028089ba307c8b848774428acd5 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal"} -C3N-02435.WGS.N.hg38 C3N-02435 LSCC WGS blood_normal CPT0241820002 0bae0fae-6a3e-4fb0-a80f-1bf415e72b5e_wgs_gdc_realn.bam 192299604099 BAM harmonized CPTAC3 04c389c7-e942-48a7-b22d-c85ede5ecc77 980d88457a446dafbe3a1d59eec00009 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal"} -C3N-02435.WGS.T C3N-02435 LSCC WGS tumor CPT0241170006 CPT0241170006.WholeGenome.RP-1303.bam 54140669613 BAM aligned CPTAC3 89f4f6aa-e232-4958-8bb6-eca2619e9cf7 3548af3a7bd1bafb6df4a589c32b5493 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor"} -C3N-02435.WGS.T.hg38 C3N-02435 LSCC WGS tumor CPT0241170006 cba5b303-2d15-4b89-af40-deb7918cef18_wgs_gdc_realn.bam 77964146155 BAM harmonized CPTAC3 d0a70378-c8ef-4ef6-bb97-2968ea615766 515f0b707d9994af7932cb3989432904 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor"} -C3N-02435.WXS.A C3N-02435 LSCC WXS tissue_normal CPT0241210006 CPT0241210006.WholeExome.RP-1303.bam 21913606523 BAM aligned CPTAC3 a171ed09-7a45-4143-a78f-7c6b54698651 db62624d53eda8fc9fa86b546450727d {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.WXS.A.hg38 C3N-02435 LSCC WXS tissue_normal CPT0241210006 d9e75637-0a3b-4e37-bd3b-11433221acba_wxs_gdc_realn.bam 30765532578 BAM harmonized CPTAC3 406ccf72-b046-4b2b-b5ef-e836a8a74a1c a2d0e932040762f197a4af5d8ba4ebac {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02435.WXS.N C3N-02435 LSCC WXS blood_normal CPT0241820002 CPT0241820002.WholeExome.RP-1303.bam 25100432254 BAM aligned CPTAC3 0da0f869-5945-44f4-af6f-c984936f293d 507f703fcbbacea7fd0171870be7a544 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal"} -C3N-02435.WXS.N.hg38 C3N-02435 LSCC WXS blood_normal CPT0241820002 0bae0fae-6a3e-4fb0-a80f-1bf415e72b5e_wxs_gdc_realn.bam 34941809237 BAM harmonized CPTAC3 db1c4701-ae3b-45fa-a6aa-6c6356cac883 4b0d885181ea4d61f090b45c2aece8a2 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal"} -C3N-02435.WXS.T C3N-02435 LSCC WXS tumor CPT0241170006 CPT0241170006.WholeExome.RP-1303.bam 24525040420 BAM aligned CPTAC3 8f46c578-c0d9-466c-a717-c12bc3bc1bc7 6cad12dbce20a096d3c396dceabaf289 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor"} -C3N-02435.WXS.T.hg38 C3N-02435 LSCC WXS tumor CPT0241170006 cba5b303-2d15-4b89-af40-deb7918cef18_wxs_gdc_realn.bam 33864761049 BAM harmonized CPTAC3 08c58f05-9147-411b-af8e-ebc2ff60f56b af2fc030caa2d150aa6c867413166923 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor"} -C3N-02436.MethArray.Green.T C3N-02436 UCEC Methylation_Array tumor CPT0115530009 203219640095_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c2b6d56d-b218-4835-9d2a-c0ce563442a6 ca1179c5ed7dc04133c5a369b0a571a6 {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor"} -C3N-02436.MethArray.Red.T C3N-02436 UCEC Methylation_Array tumor CPT0115530009 203219640095_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 2b08f5eb-efad-4490-bf5e-cd3526530293 501be75d9f29a0de403fe2d3ead319c4 {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor"} -C3N-02436.miRNA-Seq.A.hg38 C3N-02436 UCEC miRNA-Seq tissue_normal CPT0115570006 7f73650f-20da-4a82-b1eb-f44b4b7375bf_mirnaseq_gdc_realn.bam 404129305 BAM harmonized CPTAC3 d41abdfb-30a9-431c-95e1-76f831208535 f2b1471195a54cb83455dfe3001d7712 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.miRNA-Seq.S19_L002_R1.T C3N-02436 UCEC miRNA-Seq tumor CPT0115530006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGAAA_S19_L002_R1_001.unaln.bam 159919242 BAM S19_L002_R1 unaligned CPTAC3 1d3db87c-11c3-49a6-b119-e4ec35a1bb79 b38bfc87e541876f2eeaa934124b4814 {"aliquot_tag": "ALQ_6f202ae1", "sample": "S19", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02436.miRNA-Seq.S33_L003_R1.A C3N-02436 UCEC miRNA-Seq tissue_normal CPT0115570006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L003_R1_001.unaln.bam 360985718 BAM S33_L003_R1 unaligned CPTAC3 f530fc5e-c188-4ee2-baad-3f60982eaaaa 9162e5c6a320c8f8011eace7500c833d {"aliquot_tag": "ALQ_9aa08c21", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.miRNA-Seq.T.hg38 C3N-02436 UCEC miRNA-Seq tumor CPT0115530006 ba6f79b4-70d3-4c47-8e72-1310df42fc71_mirnaseq_gdc_realn.bam 174974061 BAM harmonized CPTAC3 a8f9cfcc-8719-4a9c-9fe0-e0b973497a67 930808f0679a518b494785e44cb5c6a4 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.chimeric.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.chimeric.gdc_realn.bam 144619189 BAM chimeric harmonized CPTAC3 cc1ac09b-5bab-49b4-b890-9a8bc837884d 587c0bbb9d9fb6466b9ce60377f2fcb6 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.RNA-Seq.chimeric.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.chimeric.gdc_realn.bam 27379161 BAM chimeric harmonized CPTAC3 6a86ed40-20b7-4cfc-871c-68c2fbfde9a6 11988330c1a553015eb3de3d3b20b454 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.chimeric.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.chimeric.gdc_realn.bam 15813858 BAM chimeric harmonized CPTAC3 efa83d32-ec21-4b18-873f-2c7bfd073d9a fc43679059f5b049e4876a7c57637f77 {"aliquot_tag": "ALQ_86948e53", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.genomic.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.genomic.gdc_realn.bam 9195871656 BAM genomic harmonized CPTAC3 d5cdea35-6c75-408b-aae9-14a23ca6dddb b1f4a7c9d4913b8a09bc75915208cc42 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.RNA-Seq.genomic.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.genomic.gdc_realn.bam 8899833740 BAM genomic harmonized CPTAC3 9d6e8b5e-9eec-42f7-9edc-035311c8f85f 90d70719e9ffa583c698a2c10942cee2 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.genomic.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.genomic.gdc_realn.bam 5124499507 BAM genomic harmonized CPTAC3 6557b425-07f4-4448-b5d0-b608e94bf3c6 5dedff6f010c937289dbe6fa95aef150 {"aliquot_tag": "ALQ_86948e53", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.S14_L006_R1.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R1_001.fastq.gz 4086354403 FASTQ S14_L006_R1 unaligned CPTAC3 7b1e901e-65c0-4029-986e-a12d2087b8a9 4a3fe34ccec30993397ea0e6864d1a75 {"aliquot_tag": "ALQ_9aa08c21", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.RNA-Seq.S14_L006_R2.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R2_001.fastq.gz 4343787238 FASTQ S14_L006_R2 unaligned CPTAC3 86af161a-1571-472a-abf6-52fa762aa073 8c1147aeed65d79cfff955b2c9a34694 {"aliquot_tag": "ALQ_9aa08c21", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.RNA-Seq.S21_L006_R1.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 3913669967 FASTQ S21_L006_R1 unaligned CPTAC3 98abadbd-a89b-4179-9fbd-4f881c729e34 af8be990f46ef49da25c07cf430e37fb {"aliquot_tag": "ALQ_6f202ae1", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.S21_L006_R2.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4264446424 FASTQ S21_L006_R2 unaligned CPTAC3 7e9715d5-2977-4cf1-ac8b-6e18ab2389a6 abc04db6c2366751e30bac28c1745161 {"aliquot_tag": "ALQ_6f202ae1", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.S44_R1.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R1_001.fastq.gz 2568256890 FASTQ S44_R1 unaligned CPTAC3 d48c4ff4-b2bb-498d-b822-111bab49fc55 771102906a8c6f1e12e5b6c9f9e279da {"aliquot_tag": "ALQ_86948e53", "sample": "S44", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.S44_R2.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R2_001.fastq.gz 2844079303 FASTQ S44_R2 unaligned CPTAC3 55a032f3-1dea-41b8-93ab-c1e4515ebd4a e04acfd4377ec0aa5c906f49a33fd76c {"aliquot_tag": "ALQ_86948e53", "sample": "S44", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.transcriptome.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.transcriptome.gdc_realn.bam 11137195544 BAM transcriptome harmonized CPTAC3 df291048-b089-45b5-acfb-4d9aca42123c 3ce14de9ace98c35b6ffc8e4a8f845a2 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.RNA-Seq.transcriptome.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.transcriptome.gdc_realn.bam 10258279204 BAM transcriptome harmonized CPTAC3 475f4ae0-c951-4460-9f30-be3dd694e2b6 fbb89ffba7486590304564158eb7a3b5 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor"} -C3N-02436.RNA-Seq.transcriptome.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.transcriptome.gdc_realn.bam 4002843912 BAM transcriptome harmonized CPTAC3 a35fd3c4-103c-4912-86a6-e68d9c7b8a32 9183bc74305d9216a1e3221533011efc {"aliquot_tag": "ALQ_86948e53", "gdc_sample_type": "Primary Tumor"} -C3N-02436.WGS.N C3N-02436 UCEC WGS blood_normal CPT0116420002 CPT0116420002.WholeGenome.RP-1303.bam 116369232209 BAM aligned CPTAC3 f762e07b-fe88-4716-b19f-d6e7eccdbbca add901edef0460b58267c390fbea14ef {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02436.WGS.N.hg38 C3N-02436 UCEC WGS blood_normal CPT0116420002 ff40e1c4-0a27-4520-98fb-a6785a90c2cf_wgs_gdc_realn.bam 166822187937 BAM harmonized CPTAC3 594f99b7-c9f2-421b-a08a-2e5f131d16ef 1ed6bd72b827c193e01ec260dbccd39b {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02436.WGS.T C3N-02436 UCEC WGS tumor CPT0115530009 CPT0115530009.WholeGenome.RP-1303.bam 103002774208 BAM aligned CPTAC3 d47fa50c-acd4-45fe-a531-d3e78fadfcfe a2ce089470527d6d17e7dd2342b53a9c {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor"} -C3N-02436.WGS.T.hg38 C3N-02436 UCEC WGS tumor CPT0115530009 0832099e-db54-43c7-9801-d45f66a09d9d_wgs_gdc_realn.bam 148484711610 BAM harmonized CPTAC3 8e7277c3-d3a5-4bd0-9aa8-96fe8333310e 73f92357f4be1d105cb0e90ca4a36899 {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor"} -C3N-02436.WXS.A C3N-02436 UCEC WXS tissue_normal CPT0115570009 CPT0115570009.WholeExome.RP-1303.bam 18057009456 BAM aligned CPTAC3 a0737fd4-d214-4c38-b2c7-6f9d9806ce34 da9bf9d925512aedad6e13b583c22a0c {"aliquot_tag": "ALQ_a1f91b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.WXS.A.hg38 C3N-02436 UCEC WXS tissue_normal CPT0115570009 6ebd882f-3982-46ed-b633-12077b6bab88_wxs_gdc_realn.bam 24883837055 BAM harmonized CPTAC3 9cdfe959-fec9-44a9-b38b-f4d9d7f26c5a e7350a256283245bd1244b40a6666230 {"aliquot_tag": "ALQ_a1f91b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02436.WXS.N C3N-02436 UCEC WXS blood_normal CPT0116420002 CPT0116420002.WholeExome.RP-1303.bam 33469897941 BAM aligned CPTAC3 3625e91d-c266-47c9-aee9-21f65aa3fdaa d856a52b651312bd73fbfb428465f9d7 {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02436.WXS.N.hg38 C3N-02436 UCEC WXS blood_normal CPT0116420002 ff40e1c4-0a27-4520-98fb-a6785a90c2cf_wxs_gdc_realn.bam 45525014072 BAM harmonized CPTAC3 c77c58c0-ad54-45c9-88c8-f7f32f143b03 40728c77a8bc3ce1861554805aabdfb8 {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal"} -C3N-02436.WXS.T C3N-02436 UCEC WXS tumor CPT0115530009 CPT0115530009.WholeExome.RP-1303.bam 23724506810 BAM aligned CPTAC3 8b7bcad5-5925-438d-a6cb-a785f2d7e576 d1b7b3793fbc957e9f2d0d397ea6e47e {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor"} -C3N-02436.WXS.T.hg38 C3N-02436 UCEC WXS tumor CPT0115530009 0832099e-db54-43c7-9801-d45f66a09d9d_wxs_gdc_realn.bam 32481555958 BAM harmonized CPTAC3 fec93555-caa1-485d-9f10-2d870c0d103d 26b1e8002c6b13434c3ff4daeac9ffae {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor"} -C3N-02437.MethArray.Green.T C3N-02437 UCEC Methylation_Array tumor CPT0159110006 203561450030_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 958e543a-5ba2-43cc-b836-59ae9cdab8a6 174e861bc8bab9493c142301688ae5c2 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor"} -C3N-02437.MethArray.Red.T C3N-02437 UCEC Methylation_Array tumor CPT0159110006 203561450030_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 33f3e4b0-6bed-44d4-b53f-9eec79316274 32fbe7811a21a0363f459a13c2ee7337 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor"} -C3N-02437.miRNA-Seq.S39_L002_R1.T C3N-02437 UCEC miRNA-Seq tumor CPT0159110009 190813_UNC32-K00270_0196_AH5MCWBBXY_TAGCTT_S39_L002_R1_001.unaln.bam 227191491 BAM S39_L002_R1 unaligned CPTAC3 84e4aa80-6aee-40f6-9b82-7871ecf8ae6f 9dc6c0c1ad6982a2239ea082b56ffacf {"aliquot_tag": "ALQ_5d244288", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02437.miRNA-Seq.T.hg38 C3N-02437 UCEC miRNA-Seq tumor CPT0159110009 5997a677-3d7e-4808-8cac-70ed7e1ab7da_mirnaseq_gdc_realn.bam 252701774 BAM harmonized CPTAC3 683a8997-23f0-421a-a685-f807625220bd ba605af2c79c6588cb2f544f605343ff {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.chimeric.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.chimeric.gdc_realn.bam 36318079 BAM chimeric harmonized CPTAC3 4f0fb03b-3165-4ac3-99ca-cdf3aa656574 11012bfa810800b6a2afaa4b9d771899 {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.chimeric.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.chimeric.gdc_realn.bam 83538249 BAM chimeric harmonized CPTAC3 207415b4-fb43-40ae-b244-d888154ccc9a 16facd1f96bb303fafd8b277f24ff83a {"aliquot_tag": "ALQ_a67f6c7a", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.genomic.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.genomic.gdc_realn.bam 8668660421 BAM genomic harmonized CPTAC3 f0b83b4a-792a-4298-a457-fa7232df1123 cd8031e335e32414981f592014b75654 {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.genomic.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.genomic.gdc_realn.bam 5133664645 BAM genomic harmonized CPTAC3 1525af9f-c923-45c0-8fda-cbe8cd623108 438f781c68b613da7f2a611edc00bdc3 {"aliquot_tag": "ALQ_a67f6c7a", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.S4_L001_R1.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R1_001.fastq.gz 4294390025 FASTQ S4_L001_R1 unaligned CPTAC3 a38f130e-be87-4a00-a7a7-03f323dadcad fdbc2249bf7c2b08276e05496afbf920 {"aliquot_tag": "ALQ_5d244288", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.S4_L001_R2.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R2_001.fastq.gz 4570939348 FASTQ S4_L001_R2 unaligned CPTAC3 be404685-99b5-4648-aeb9-987f1ed14889 f690267d63775a5b63ba4aa9eebeb3d5 {"aliquot_tag": "ALQ_5d244288", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.S62_R1.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R1_001.fastq.gz 3264092318 FASTQ S62_R1 unaligned CPTAC3 cf132ccc-3ddf-411e-9677-318419393932 b7f1c7a52dc65c68d0590609c614c4ab {"aliquot_tag": "ALQ_a67f6c7a", "sample": "S62", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.S62_R2.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R2_001.fastq.gz 3374962760 FASTQ S62_R2 unaligned CPTAC3 5d413923-0466-4bf0-ad34-e51e6503ee33 60208a80c0102dec9dc7cdb023888933 {"aliquot_tag": "ALQ_a67f6c7a", "sample": "S62", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.transcriptome.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.transcriptome.gdc_realn.bam 10464729833 BAM transcriptome harmonized CPTAC3 12e3f212-5773-4a93-bbb4-80918a0ec4e2 ee372c5230295a4beebb377b23ce95ad {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor"} -C3N-02437.RNA-Seq.transcriptome.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.transcriptome.gdc_realn.bam 2111740819 BAM transcriptome harmonized CPTAC3 157d2dda-c5cd-4748-bd82-68a3c21dce1e 4acc58f1fbddb25f46f647cc2f2c2708 {"aliquot_tag": "ALQ_a67f6c7a", "gdc_sample_type": "Primary Tumor"} -C3N-02437.WGS.N C3N-02437 UCEC WGS blood_normal CPT0159380002 CPT0159380002.WholeGenome.RP-1303.bam 67000945760 BAM aligned CPTAC3 1df3b945-136c-4c56-9dbf-c91c5e756d71 cac294e2ca19b9d83695762b06f111ee {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02437.WGS.N.hg38 C3N-02437 UCEC WGS blood_normal CPT0159380002 1f6a7fcf-9360-4258-90e2-daddece83775_wgs_gdc_realn.bam 97354995064 BAM harmonized CPTAC3 06466397-79c9-4f12-8b65-3371db9d467d 30da521dff0600f73f3585d4429edaf1 {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02437.WGS.T C3N-02437 UCEC WGS tumor CPT0159110006 CPT0159110006.WholeGenome.RP-1303.bam 74315837136 BAM aligned CPTAC3 6d1ab595-a870-4df4-9a0d-90c43c5b7a16 869bd5b697fd02dfc10307a5c5facf7b {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor"} -C3N-02437.WGS.T.hg38 C3N-02437 UCEC WGS tumor CPT0159110006 54c1398f-d9ab-492a-8a17-befada12bd65_wgs_gdc_realn.bam 108365712021 BAM harmonized CPTAC3 cfdecd30-b509-43fc-b9ee-4a7a9f4bffb6 7d6e7a13fff52cb1fc6b387d5c0d41d7 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor"} -C3N-02437.WXS.N C3N-02437 UCEC WXS blood_normal CPT0159380002 CPT0159380002.WholeExome.RP-1303.bam 24127372414 BAM aligned CPTAC3 bb2a4790-ccda-4016-b029-21a2d86d5703 733b9d2f8f4c163e8befa110285ebe54 {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02437.WXS.N.hg38 C3N-02437 UCEC WXS blood_normal CPT0159380002 1f6a7fcf-9360-4258-90e2-daddece83775_wxs_gdc_realn.bam 33113527885 BAM harmonized CPTAC3 8ab04662-de4c-4ccc-b6ed-6a863f04d797 acba8def61bbb1db9137861dad89c4e7 {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02437.WXS.T C3N-02437 UCEC WXS tumor CPT0159110006 CPT0159110006.WholeExome.RP-1303.bam 20802155363 BAM aligned CPTAC3 e0af140c-86cb-4871-aec7-10df5fd70127 34de8c1064e1325403f35a1766ad0e47 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor"} -C3N-02437.WXS.T.hg38 C3N-02437 UCEC WXS tumor CPT0159110006 54c1398f-d9ab-492a-8a17-befada12bd65_wxs_gdc_realn.bam 28587377981 BAM harmonized CPTAC3 2891d126-06da-4330-be99-7efcd22ab30a 37b89703323fe87f55bd53feac197683 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor"} -C3N-02439.MethArray.Green.A C3N-02439 CCRCC Methylation_Array tissue_normal CPT0158690006 204930640041_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f5c117b3-9bec-4971-b3d2-e5254073fdb1 1c2fb8c50570b9b7fbaafde369dbfe6c {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.MethArray.Green.T C3N-02439 CCRCC Methylation_Array tumor CPT0158660009 203219650065_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8a9d06f3-2971-4401-a6fe-c53a83708263 658250829263e86ea58da66f3027ef9f {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor"} -C3N-02439.MethArray.Red.A C3N-02439 CCRCC Methylation_Array tissue_normal CPT0158690006 204930640041_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 8d0bf732-2217-4953-9a28-58feba38d197 62f4ae4079b98b9e43dcec7005b44ae3 {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.MethArray.Red.T C3N-02439 CCRCC Methylation_Array tumor CPT0158660009 203219650065_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 e8bc683a-d923-4ba0-a859-2603b6ef48e6 2ff3d75b64ef1afcbfb53afe20445cd3 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor"} -C3N-02439.miRNA-Seq.A.hg38 C3N-02439 CCRCC miRNA-Seq tissue_normal CPT0158690009 1329c35a-325a-43e9-8817-b401f79c6aba_mirnaseq_gdc_realn.bam 192847986 BAM harmonized CPTAC3 7989798c-deac-41d2-ae9a-9dce3bb624f5 9e582243ea85710005e0135d98f6a8f5 {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.miRNA-Seq.S19_L002_R1.A C3N-02439 CCRCC miRNA-Seq tissue_normal CPT0158690009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L002_R1_001.unaln.bam 176697886 BAM S19_L002_R1 unaligned CPTAC3 34dde28b-85ac-45b6-84f6-1aec7f206c2d fde36a1d69b420a7e56896c805e90330 {"aliquot_tag": "ALQ_d6263245", "sample": "S19", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.miRNA-Seq.S41_L005_R1.T C3N-02439 CCRCC miRNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0176_AHYGLVBBXX_GACGAC_S41_L005_R1_001.unaln.bam 209572539 BAM S41_L005_R1 unaligned CPTAC3 996a807e-c2bb-4119-81d8-7d854343988d 3c28a4aec331a95b21b80088571f747f {"aliquot_tag": "ALQ_c4c9b805", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02439.miRNA-Seq.T.hg38 C3N-02439 CCRCC miRNA-Seq tumor CPT0158660006 f10d622b-2e99-4231-a592-f2f8f13640e5_mirnaseq_gdc_realn.bam 230671961 BAM harmonized CPTAC3 57205c90-1352-44f4-9c59-f8ebc3719b38 c7c828fc63c02d6c8ea6c7ad083088e1 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor"} -C3N-02439.RNA-Seq.chimeric.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.chimeric.gdc_realn.bam 58625985 BAM chimeric harmonized CPTAC3 6d053d0b-4acf-42ad-a821-1c50fa04b48a 93b3595e9895c14bfe74a7be6fa5492e {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.RNA-Seq.chimeric.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.chimeric.gdc_realn.bam 62862523 BAM chimeric harmonized CPTAC3 7c8943f5-2db6-40d7-8f52-beb2b9fa10d6 8e75d2da917c7c3551bba796678b2d93 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor"} -C3N-02439.RNA-Seq.genomic.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.genomic.gdc_realn.bam 8314618545 BAM genomic harmonized CPTAC3 9326fe61-f88a-448f-9901-39ac823292bb 8e1607d2878a6484f97f8bb439a0b4d7 {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.RNA-Seq.genomic.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.genomic.gdc_realn.bam 8813156660 BAM genomic harmonized CPTAC3 6a595bdf-0dc3-4a76-a1ac-22b019891ec5 122dd0d315a138d19c85e53cbef22ea6 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor"} -C3N-02439.RNA-Seq.S18_L007_R1.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R1_001.fastq.gz 3424139828 FASTQ S18_L007_R1 unaligned CPTAC3 a4d1b56c-a881-4b63-85d6-f09a496fe9d0 2b06944878755ba7a450d52d1598d4f8 {"aliquot_tag": "ALQ_d6263245", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.RNA-Seq.S18_L007_R2.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R2_001.fastq.gz 3597530871 FASTQ S18_L007_R2 unaligned CPTAC3 51c2c085-8016-4881-a8a1-4cdb23625895 279310e5f666157f9b6660972d2cd19d {"aliquot_tag": "ALQ_d6263245", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.RNA-Seq.S23_L006_R1.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4159334660 FASTQ S23_L006_R1 unaligned CPTAC3 b97e543a-4798-40cb-9eba-9fb31606ba14 55e803e556ce1b099dc50783e3c3cde4 {"aliquot_tag": "ALQ_c4c9b805", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02439.RNA-Seq.S23_L006_R2.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4327501541 FASTQ S23_L006_R2 unaligned CPTAC3 768908dd-e3a0-41a4-b8ab-299b79a254af a95ea1888209ca2458e5b824776593dc {"aliquot_tag": "ALQ_c4c9b805", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02439.RNA-Seq.transcriptome.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.transcriptome.gdc_realn.bam 8021047492 BAM transcriptome harmonized CPTAC3 fdda16cc-8024-4b6d-bdbf-feb2862e6f6e 3ccf42e903a89110f30a2c526461dc06 {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.RNA-Seq.transcriptome.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.transcriptome.gdc_realn.bam 10770900272 BAM transcriptome harmonized CPTAC3 4b2d37d4-665a-4b75-bea8-2f03a56be719 cf53e88a7b8f4ac688dce741906baee2 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor"} -C3N-02439.WGS.N C3N-02439 CCRCC WGS blood_normal CPT0159410002 CPT0159410002.WholeGenome.RP-1303.bam 89426794434 BAM aligned CPTAC3 94e23d33-c558-4d1a-9ec9-19a3f2e60ed9 c7aeb0eb18c6d7ce4164dc241b6ee34a {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02439.WGS.N.hg38 C3N-02439 CCRCC WGS blood_normal CPT0159410002 849f9c8e-68f7-4be8-95ee-b70828ffa713_wgs_gdc_realn.bam 130294297028 BAM harmonized CPTAC3 d10fd5bf-edb1-45ef-b18c-d4fd21fbb373 676640c7d5989b593c68b2fd9f994807 {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02439.WGS.T C3N-02439 CCRCC WGS tumor CPT0158660009 CPT0158660009.WholeGenome.RP-1303.bam 101708607952 BAM aligned CPTAC3 09516bc6-155a-4054-b973-0f45334fa533 5b74b40c63221966a90fe8e0bdb421a9 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor"} -C3N-02439.WGS.T.hg38 C3N-02439 CCRCC WGS tumor CPT0158660009 25d28a81-9e72-428c-abe3-bdcd5cbea42f_wgs_gdc_realn.bam 145645453113 BAM harmonized CPTAC3 95c64732-7946-44e8-af75-4590cc70afff bc53ad4c4078327b1ebfbd43e7008271 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor"} -C3N-02439.WXS.A C3N-02439 CCRCC WXS tissue_normal CPT0158690006 CPT0158690006.WholeExome.RP-1303.bam 27056299287 BAM aligned CPTAC3 383a0876-d8f4-46a7-91cb-e192d4449074 7dfbf10941f05b3cf06dea88bcea8a08 {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.WXS.A.hg38 C3N-02439 CCRCC WXS tissue_normal CPT0158690006 8b783c1c-16bf-4e52-a417-db3b874da7df_wxs_gdc_realn.bam 37778959345 BAM harmonized CPTAC3 d369f8d9-1a1d-4c87-84a6-018f88e7c9f4 2060c633c56891fd7948961ddd0cc820 {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02439.WXS.N C3N-02439 CCRCC WXS blood_normal CPT0159410002 CPT0159410002.WholeExome.RP-1303.bam 26175805260 BAM aligned CPTAC3 40800be4-865a-424c-b4a7-2f28add847f3 9633128a120393c0d651ec9767aebcc4 {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02439.WXS.N.hg38 C3N-02439 CCRCC WXS blood_normal CPT0159410002 849f9c8e-68f7-4be8-95ee-b70828ffa713_wxs_gdc_realn.bam 36082572964 BAM harmonized CPTAC3 712bc7b9-75e0-4304-960f-7f061a2a215a cb8c884149265bc97ccb2916c2834157 {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02439.WXS.T C3N-02439 CCRCC WXS tumor CPT0158660009 CPT0158660009.WholeExome.RP-1303.bam 31305591528 BAM aligned CPTAC3 2493549e-7df2-4666-b875-1ecda7e5b484 1df1b1a8b498be2905c8e37d3cfa09ee {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor"} -C3N-02439.WXS.T.hg38 C3N-02439 CCRCC WXS tumor CPT0158660009 25d28a81-9e72-428c-abe3-bdcd5cbea42f_wxs_gdc_realn.bam 43193560088 BAM harmonized CPTAC3 86856fed-b8ba-4323-8609-5d4466f67934 606f03b5524a07e8c2909b1f5d8a06c6 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor"} -C3N-02440.MethArray.Green.A C3N-02440 CCRCC Methylation_Array tissue_normal CPT0384450009 205589740002_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a96cf6e7-b028-4d09-8cfd-cac9b13952a1 698578cd5da0dbecfe72bcd14281ce43 {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.MethArray.Green.T C3N-02440 CCRCC Methylation_Array tumor CPT0384430009 205549600088_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9460ef08-e4de-49f1-a077-5f3b7218e5c4 4ccc0cba98dfd5c2d151d0d83ffea07b {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor"} -C3N-02440.MethArray.Red.A C3N-02440 CCRCC Methylation_Array tissue_normal CPT0384450009 205589740002_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 e0132987-79a6-482a-8d21-65e065facfc6 aea586791d28e34ee028b4ac3f2ffc16 {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.MethArray.Red.T C3N-02440 CCRCC Methylation_Array tumor CPT0384430009 205549600088_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 8f357c49-d9e5-4bde-82ab-b7c4a8828524 9287d18703887df9fc5c11463aaa1c55 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor"} -C3N-02440.miRNA-Seq.A.hg38 C3N-02440 CCRCC miRNA-Seq tissue_normal CPT0384450006 5cce5a45-4a8f-471b-b5d9-a9cf6066c7b4_mirnaseq_gdc_realn.bam 274069205 BAM harmonized CPTAC3 7d790060-8336-4131-83cf-b9ea71e9f02c 7969c36f10f448cf18902c0f553c0ba1 {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.miRNA-Seq.S15_L001_R1.A C3N-02440 CCRCC miRNA-Seq tissue_normal CPT0384450006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTAGAG_S15_L001_R1_001.unaln.bam 251548640 BAM S15_L001_R1 unaligned CPTAC3 475c5715-3ece-46bb-8664-d4e45bd47377 cc80ec04402749d0b7ca261ba2a4f8cc {"aliquot_tag": "ALQ_bcf234fd", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.miRNA-Seq.S9_L001_R1.T C3N-02440 CCRCC miRNA-Seq tumor CPT0384430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CCGTCC_S9_L001_R1_001.unaln.bam 221068064 BAM S9_L001_R1 unaligned CPTAC3 8435d16f-7017-4c00-91fa-f47f068729e0 6c2fda5972845582a3e8ae4afbcdbb75 {"aliquot_tag": "ALQ_33b2c15d", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02440.miRNA-Seq.T.hg38 C3N-02440 CCRCC miRNA-Seq tumor CPT0384430006 f3600bfc-6584-4b88-a730-dbbde7a398d5_mirnaseq_gdc_realn.bam 236067606 BAM harmonized CPTAC3 d89e7ee7-fffe-4205-a3ce-fe41093bff94 76f405575c8cc1190740a0fd623f3d8a {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor"} -C3N-02440.RNA-Seq.chimeric.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.chimeric.gdc_realn.bam 233467565 BAM chimeric harmonized CPTAC3 bac222af-580c-4cd4-b114-3ebea02c3602 9241c8fb0abc39878e0c99944f241e67 {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.RNA-Seq.chimeric.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.chimeric.gdc_realn.bam 277230342 BAM chimeric harmonized CPTAC3 947f5515-788a-42b3-a201-f56c2eefa45b 5d8e403ff9239cdb982b5bb896705ad8 {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor"} -C3N-02440.RNA-Seq.genomic.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.genomic.gdc_realn.bam 7695730481 BAM genomic harmonized CPTAC3 41dbdd23-822e-4766-b0cd-29eba0bec105 59d01c2ac4f59611ce91642dddfc4d27 {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.RNA-Seq.genomic.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.genomic.gdc_realn.bam 7517816932 BAM genomic harmonized CPTAC3 d6e91e66-b4fd-4fdd-a543-c624f76855cc d223d56797f953442887329bf49cab0b {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor"} -C3N-02440.RNA-Seq.S20_L005_R1.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R1_001.fastq.gz 3600454699 FASTQ S20_L005_R1 unaligned CPTAC3 c2dd4f3c-2485-4261-ab43-204060ae3cae a103e5f3d96a257e92d6638a0df9fee6 {"aliquot_tag": "ALQ_bcf234fd", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.RNA-Seq.S20_L005_R2.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R2_001.fastq.gz 4024417229 FASTQ S20_L005_R2 unaligned CPTAC3 26c6d14a-5527-4d67-8db0-99ad8b185bb2 8576ca8a40d5c4dc1ba195d4c2b2c44d {"aliquot_tag": "ALQ_bcf234fd", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.RNA-Seq.S21_L006_R1.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 3512128406 FASTQ S21_L006_R1 unaligned CPTAC3 5b06be3c-4cc7-4db2-a5f3-d3edec4342a9 e66ebd3cb2c193e13c4cd40f8f0e4351 {"aliquot_tag": "ALQ_33b2c15d", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02440.RNA-Seq.S21_L006_R2.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 3963528862 FASTQ S21_L006_R2 unaligned CPTAC3 76acf7f1-0f9b-44fd-aa16-d5fe1d950e88 3163f1ab77f9e16ebc72787df5f2614e {"aliquot_tag": "ALQ_33b2c15d", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02440.RNA-Seq.transcriptome.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.transcriptome.gdc_realn.bam 9065523905 BAM transcriptome harmonized CPTAC3 c09a923f-0cf9-4455-aa4b-d932cb3ee0ee f29f8cefc5729cee7df422ad6547543d {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.RNA-Seq.transcriptome.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.transcriptome.gdc_realn.bam 8088195156 BAM transcriptome harmonized CPTAC3 b10ff494-9003-43b9-b6e9-6afdb0e9a7a0 051f734ff4f16d7b2d79a20018e6ca3c {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor"} -C3N-02440.WGS.N C3N-02440 CCRCC WGS blood_normal CPT0385420002 CPT0385420002.WholeGenome.RP-2158.bam 28558429313 BAM aligned CPTAC3 027650de-1b5e-4b01-a665-579116df779f f7c0996f99855e642ff948e65c0fc461 {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal"} -C3N-02440.WGS.N.hg38 C3N-02440 CCRCC WGS blood_normal CPT0385420002 b3cc5d3f-c66e-48ff-9bfc-b2b4cebe13d4_wgs_gdc_realn.bam 86299120355 BAM harmonized CPTAC3 af990cca-8c0a-4590-a3b7-b17838ecf11f a948eda8080549b45d5e929b31d85692 {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal"} -C3N-02440.WGS.T C3N-02440 CCRCC WGS tumor CPT0384430009 CPT0384430009.WholeGenome.RP-2158.bam 28561772726 BAM aligned CPTAC3 3cb67dad-0f73-4413-8a6d-f08b18d80ebf e982dc536bf997a0530c50a44aec9fa8 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor"} -C3N-02440.WGS.T.hg38 C3N-02440 CCRCC WGS tumor CPT0384430009 433d6946-cf30-4468-9152-89da1d9c71c7_wgs_gdc_realn.bam 83207380741 BAM harmonized CPTAC3 2abf23ac-7f36-4d1e-8c3e-bf27c9c9708e 6f9ae1d22ba1e4dc9c1458abc4116a51 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor"} -C3N-02440.WXS.A C3N-02440 CCRCC WXS tissue_normal CPT0384450009 CPT0384450009.WholeExome.RP-1303.bam 24841902159 BAM aligned CPTAC3 24be8aea-e162-45a0-af0a-6f785b39f8df 80578278906e541195c7a6bc4289c90d {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.WXS.A.hg38 C3N-02440 CCRCC WXS tissue_normal CPT0384450009 b1433c80-02ab-4985-b6af-10ef92801ec4_wxs_gdc_realn.bam 34919298377 BAM harmonized CPTAC3 c19f8aaa-d7ff-4f64-a2f7-69bec780e6f5 f87d27d0552e5359fa664fc14632a71c {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02440.WXS.N C3N-02440 CCRCC WXS blood_normal CPT0385420002 CPT0385420002.WholeExome.RP-1303.bam 24579115711 BAM aligned CPTAC3 66798474-bc3b-4749-a683-f1b0fa1b6614 b2457faf9dd1b44340074bf4f7f88020 {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal"} -C3N-02440.WXS.N.hg38 C3N-02440 CCRCC WXS blood_normal CPT0385420002 b3cc5d3f-c66e-48ff-9bfc-b2b4cebe13d4_wxs_gdc_realn.bam 34052337350 BAM harmonized CPTAC3 504dfd1d-366f-4ba1-84dd-cf58e4712be9 b223aa3e11ea9ff37cff2eae52b5846d {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal"} -C3N-02440.WXS.T C3N-02440 CCRCC WXS tumor CPT0384430009 CPT0384430009.WholeExome.RP-1303.bam 24158890976 BAM aligned CPTAC3 87a9db6a-693b-4d03-9f25-68ba5152ab4b abf5a2d5aba37734848f5fa0eb910174 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor"} -C3N-02440.WXS.T.hg38 C3N-02440 CCRCC WXS tumor CPT0384430009 433d6946-cf30-4468-9152-89da1d9c71c7_wxs_gdc_realn.bam 34504894883 BAM harmonized CPTAC3 32d766c2-c36a-4163-a83f-6617613ca1e3 e4c71ec17aa6653a8e0181ee90205ea1 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor"} -C3N-02451.MethArray.Green.A C3N-02451 LUAD Methylation_Array tissue_normal CPT0241050006 203561620159_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0a5fc8aa-fa88-4a0e-9e8e-df121c150ec0 a3c8350122fa154170b3f18ff98b7f60 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.MethArray.Green.T C3N-02451 LUAD Methylation_Array tumor CPT0241040006 203561450006_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2fdf47e7-30bf-4951-b00b-bb53e0c402b2 de48e168ee9467becb586f4db04b7edb {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor"} -C3N-02451.MethArray.Red.A C3N-02451 LUAD Methylation_Array tissue_normal CPT0241050006 203561620159_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 7fb8eb52-43c4-4671-91ab-839afa8db0cc f4e6a12914c0490d38aa83ae1ee25a63 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.MethArray.Red.T C3N-02451 LUAD Methylation_Array tumor CPT0241040006 203561450006_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 2bee8bf1-2f13-46ae-a538-bbfd5af156c9 29ebc1cd1823d0c6001654ca5c2a6f17 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor"} -C3N-02451.miRNA-Seq.A.hg38 C3N-02451 LUAD miRNA-Seq tissue_normal CPT0241050009 ba633d92-25e7-40bb-8558-6f94d2d7e979_mirnaseq_gdc_realn.bam 212929593 BAM harmonized CPTAC3 dd1c528e-4ca3-4806-b73f-945ad43270bc 0e0817e7cf0689384c9a749591f629da {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.miRNA-Seq.S40_L004_R1.T C3N-02451 LUAD miRNA-Seq tumor CPT0241040009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGGCA_S40_L004_R1_001.unaln.bam 279215550 BAM S40_L004_R1 unaligned CPTAC3 c71b9bc3-cfea-41b9-8c08-d29a6e46ceb0 04622d02eb182bb6295b019d05b1ad09 {"aliquot_tag": "ALQ_98506c61", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02451.miRNA-Seq.S45_L007_R1.A C3N-02451 LUAD miRNA-Seq tissue_normal CPT0241050009 190712_UNC32-K00270_0192_BH7HL3BBXY_CGTACG_S45_L007_R1_001.unaln.bam 186258501 BAM S45_L007_R1 unaligned CPTAC3 48b93e93-9506-446d-9167-53cfd4ffc5d8 e9484352f720f7ea233aa447a3f26b07 {"aliquot_tag": "ALQ_a53045d1", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.miRNA-Seq.T.hg38 C3N-02451 LUAD miRNA-Seq tumor CPT0241040009 1d7422fb-654c-4d2c-80e6-0dbb0347175e_mirnaseq_gdc_realn.bam 305344203 BAM harmonized CPTAC3 f3bb8051-c365-4568-9f8d-6405ee12bbda 42f141feab5f8b64976cfb5828a645b7 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor"} -C3N-02451.RNA-Seq.chimeric.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.chimeric.gdc_realn.bam 83507774 BAM chimeric harmonized CPTAC3 7fd70443-d2ee-46ef-beaa-7a23c1156436 4244fe42ef08822cde12cea8416292ab {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.RNA-Seq.chimeric.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.chimeric.gdc_realn.bam 24317778 BAM chimeric harmonized CPTAC3 17410d7d-a705-4ba2-8af1-da0bad507e1c 16617cc9fb4b092457f14099dcb8b8e0 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor"} -C3N-02451.RNA-Seq.genomic.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.genomic.gdc_realn.bam 6848585463 BAM genomic harmonized CPTAC3 6c08c64b-056f-48c2-82d2-542b91b0c95e a2b0f3a2d97a7173c24813750a844e33 {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.RNA-Seq.genomic.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.genomic.gdc_realn.bam 9634489533 BAM genomic harmonized CPTAC3 65bf549c-c811-4e12-9f49-c7685a76bc56 440ef6e5a360971f3fc70af83a236651 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor"} -C3N-02451.RNA-Seq.S15_L004_R1.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R1_001.fastq.gz 3239708041 FASTQ S15_L004_R1 unaligned CPTAC3 178e0d8c-862a-4248-a57c-da48fbcb46c4 6ba626ba5d6409395d3435a5a10a56ff {"aliquot_tag": "ALQ_a53045d1", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.RNA-Seq.S15_L004_R2.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R2_001.fastq.gz 3354683837 FASTQ S15_L004_R2 unaligned CPTAC3 487f8e80-d4fe-4b41-b2f8-0a090c0a9fe2 4822dfeba9332c518aca9ad2c6f91b6c {"aliquot_tag": "ALQ_a53045d1", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.RNA-Seq.S30_L008_R1.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R1_001.fastq.gz 3423060283 FASTQ S30_L008_R1 unaligned CPTAC3 3db15939-ea0a-4c22-88ad-c01dabe9cecb 2e4eb6d4e495337d5993e50162c124d4 {"aliquot_tag": "ALQ_98506c61", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02451.RNA-Seq.S30_L008_R2.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R2_001.fastq.gz 3908469233 FASTQ S30_L008_R2 unaligned CPTAC3 6a993f42-db9c-436d-9053-c3ff66120ce1 d850ba1f83eda825ac495a8a51aa53fd {"aliquot_tag": "ALQ_98506c61", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02451.RNA-Seq.transcriptome.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.transcriptome.gdc_realn.bam 7087197314 BAM transcriptome harmonized CPTAC3 7eddfec1-40ee-45fa-a7fe-8ef35de97b6f ee0d6bf55d20e77f2ad59a1929e647af {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.RNA-Seq.transcriptome.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.transcriptome.gdc_realn.bam 7575433567 BAM transcriptome harmonized CPTAC3 f2054ef9-5add-48c7-bfcd-43aae30ad1a3 51c92f389a3fb74b164fd6dab0348873 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor"} -C3N-02451.WGS.N C3N-02451 LUAD WGS blood_normal CPT0241800002 CPT0241800002.WholeGenome.RP-1303.bam 55742329145 BAM aligned CPTAC3 5a5d2802-ff22-4e73-9a24-8cba3d487430 5a9d9ec405e5b3de9686b350dbaea2d8 {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal"} -C3N-02451.WGS.N.hg38 C3N-02451 LUAD WGS blood_normal CPT0241800002 63ece0bb-876d-4c0f-9251-1a39216e701e_wgs_gdc_realn.bam 82066438981 BAM harmonized CPTAC3 6c6ba47f-e277-43f5-bb03-4f963e20d946 d0216d22d3524cf27142c841ee8f870f {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal"} -C3N-02451.WGS.T C3N-02451 LUAD WGS tumor CPT0241040006 CPT0241040006.WholeGenome.RP-1303.bam 56489622276 BAM aligned CPTAC3 c2d0eb4d-a94e-4c3c-bbaf-3ae9b0cc90aa 224f03b8a7b1a1ec75ed18f99774467f {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor"} -C3N-02451.WGS.T.hg38 C3N-02451 LUAD WGS tumor CPT0241040006 2d3be50b-acef-4dbb-9f81-09afd71a6d01_wgs_gdc_realn.bam 83928856852 BAM harmonized CPTAC3 67b5c21d-eda4-4686-b2d1-b47116a7b626 9d4e27f44987d13170f81a22245ee2c4 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor"} -C3N-02451.WXS.A C3N-02451 LUAD WXS tissue_normal CPT0241050006 CPT0241050006.WholeExome.RP-1303.bam 26084978926 BAM aligned CPTAC3 357f596a-62ae-4a86-b73d-e5b3c4985585 2ea2de11878064e898b1176bedc02076 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.WXS.A.hg38 C3N-02451 LUAD WXS tissue_normal CPT0241050006 51427fc3-1771-4411-ba8d-9d9a8aacab8e_wxs_gdc_realn.bam 36258085459 BAM harmonized CPTAC3 c58ae13a-83d5-42e4-a35e-9f4727354f7b 6affee7520b2432df7c1ee9a19aedfa5 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02451.WXS.N C3N-02451 LUAD WXS blood_normal CPT0241800002 CPT0241800002.WholeExome.RP-1303.bam 23650085620 BAM aligned CPTAC3 06ea488c-0269-4a66-88f5-d275e34a5fa0 95ee500a5e8eb5b5d1f8117ceee5f9c3 {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal"} -C3N-02451.WXS.N.hg38 C3N-02451 LUAD WXS blood_normal CPT0241800002 63ece0bb-876d-4c0f-9251-1a39216e701e_wxs_gdc_realn.bam 32187977799 BAM harmonized CPTAC3 a8da60ec-83c4-4608-b4eb-bbc7882ebf29 9ec4f9f233a990d6dc4f910a5a996205 {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal"} -C3N-02451.WXS.T C3N-02451 LUAD WXS tumor CPT0241040006 CPT0241040006.WholeExome.RP-1303.bam 20767548832 BAM aligned CPTAC3 3d4e393f-4343-4091-803a-cabaef8f97db e6de97112a8248aef9f6f0b994ad4298 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor"} -C3N-02451.WXS.T.hg38 C3N-02451 LUAD WXS tumor CPT0241040006 2d3be50b-acef-4dbb-9f81-09afd71a6d01_wxs_gdc_realn.bam 28994478490 BAM harmonized CPTAC3 e120e2c6-e093-460b-9b95-910150a410d4 821621e6fd78612ea13d583df1ba09c7 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor"} -C3N-02494.MethArray.Green.A C3N-02494 LSCC Methylation_Array tissue_normal CPT0234820009 203219670141_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1cb9595a-a029-4be1-a015-5d1fe6eae366 6871dc30aaa300b147e46f09402a8abb {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.MethArray.Green.T C3N-02494 LSCC Methylation_Array tumor CPT0234790006 203219760074_R08C01_Grn.idat 13676224 IDAT Green NA CPTAC3 f0f08a1f-49df-49af-badc-df05c628075c fde6decacd200d6ff5751f62a8bb7183 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor"} -C3N-02494.MethArray.Red.A C3N-02494 LSCC Methylation_Array tissue_normal CPT0234820009 203219670141_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 c7d2aeb2-6f2c-41dd-b508-935414695332 865106ee31393d91b5d28f48b611f2cc {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.MethArray.Red.T C3N-02494 LSCC Methylation_Array tumor CPT0234790006 203219760074_R08C01_Red.idat 13676224 IDAT Red NA CPTAC3 3b6b6de9-cc7f-413a-bec1-9b2120dc452d 7a2304c40fa1465bfeaa74b094c7cf0c {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor"} -C3N-02494.miRNA-Seq.A.hg38 C3N-02494 LSCC miRNA-Seq tissue_normal CPT0234820006 7b581342-9828-4e36-b9f2-c4645d392744_mirnaseq_gdc_realn.bam 222978334 BAM harmonized CPTAC3 6fc83936-c81d-4e11-9782-4aaad896bf21 a198bd33c4e1ba102208a05807bd2df0 {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.miRNA-Seq.S1_L005_R1.A C3N-02494 LSCC miRNA-Seq tissue_normal CPT0234820006 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L005_R1_001.unaln.bam 200199621 BAM S1_L005_R1 unaligned CPTAC3 d0bde33f-0c4d-44c2-95db-b8385ed9bea5 7f1490d9039881b20b26ba53fa87922c {"aliquot_tag": "ALQ_33012083", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.miRNA-Seq.S33_L004_R1.T C3N-02494 LSCC miRNA-Seq tumor CPT0234790009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCGTCC_S33_L004_R1_001.unaln.bam 151840930 BAM S33_L004_R1 unaligned CPTAC3 1cedf10e-8fb9-4cc6-9350-abd4abc959a4 58c8813510b37299026fb4da46dc7e6a {"aliquot_tag": "ALQ_2538bed6", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02494.miRNA-Seq.T.hg38 C3N-02494 LSCC miRNA-Seq tumor CPT0234790009 9e78336a-7097-4457-b712-3041a542aad4_mirnaseq_gdc_realn.bam 167793757 BAM harmonized CPTAC3 e9da9f66-5013-48a3-8abd-1e88bc6ffcd8 dbfc505a768ad037c421573e079e975f {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor"} -C3N-02494.RNA-Seq.chimeric.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.chimeric.gdc_realn.bam 264402110 BAM chimeric harmonized CPTAC3 183bed3e-a046-42b7-85a4-2b6b0ccb4cdb ab9c4886f8308cedf7ca1484b1027154 {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.RNA-Seq.chimeric.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.chimeric.gdc_realn.bam 181686227 BAM chimeric harmonized CPTAC3 43cdef0f-7c93-41da-8538-e4714a66975f a745492fb41511f145ccd19d06e304db {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor"} -C3N-02494.RNA-Seq.genomic.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.genomic.gdc_realn.bam 9174103511 BAM genomic harmonized CPTAC3 fed4a49c-274f-49c3-b44b-5d3286760766 05bed9630dc65a6ba64c5ac6539a6bde {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.RNA-Seq.genomic.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.genomic.gdc_realn.bam 9151120983 BAM genomic harmonized CPTAC3 d989a26b-e041-4cc8-aaee-0cc28c43d8c5 d61cf347740378580f137f0e6f35923d {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor"} -C3N-02494.RNA-Seq.S11_L003_R1.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R1_001.fastq.gz 4007001137 FASTQ S11_L003_R1 unaligned CPTAC3 ec07c5cb-5d8d-4382-b470-fa95175226d8 edfb0b561a21baa9797de2e677fcf20f {"aliquot_tag": "ALQ_2538bed6", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02494.RNA-Seq.S11_L003_R2.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R2_001.fastq.gz 4148284200 FASTQ S11_L003_R2 unaligned CPTAC3 d20fa121-a822-4e90-a5d9-eabe70735afc b011c0f82696a827e28a6e2b4c8f340a {"aliquot_tag": "ALQ_2538bed6", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02494.RNA-Seq.S19_L005_R1.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R1_001.fastq.gz 4363291646 FASTQ S19_L005_R1 unaligned CPTAC3 c5b51e85-bd31-4a9a-a486-3158e4776ea3 9173db9a05122b687a26a1c2b321fcfb {"aliquot_tag": "ALQ_33012083", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.RNA-Seq.S19_L005_R2.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R2_001.fastq.gz 4301757699 FASTQ S19_L005_R2 unaligned CPTAC3 0f456c69-99d0-4fdb-8bf0-27b41186204a 232a74113d36aaa3ef2d824d9390fac7 {"aliquot_tag": "ALQ_33012083", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.RNA-Seq.transcriptome.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.transcriptome.gdc_realn.bam 9553506951 BAM transcriptome harmonized CPTAC3 d8e5db20-cbd4-4471-83ff-d23107c20190 13a16a24ca52fcdd02ec110aeb1bbd67 {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.RNA-Seq.transcriptome.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.transcriptome.gdc_realn.bam 9581532854 BAM transcriptome harmonized CPTAC3 e4b5c49c-e0ab-438c-90c2-c2001bf74de4 e5399d1e5be3525efd609e4947a56bd6 {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor"} -C3N-02494.WGS.N C3N-02494 LSCC WGS blood_normal CPT0234910002 CPT0234910002.WholeGenome.RP-1303.bam 128130341366 BAM aligned CPTAC3 c89c8bc1-2bb3-4e82-8df0-23688854dd5e 1e52a49ee1bcaf195cdd51e0480d6046 {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal"} -C3N-02494.WGS.N.hg38 C3N-02494 LSCC WGS blood_normal CPT0234910002 826b8522-ba14-49a4-9de2-476a38a1f58b_wgs_gdc_realn.bam 184833543871 BAM harmonized CPTAC3 1a090903-7d30-4882-9dd3-96994dc4ee8a de513ac85e76ea0186255998ac1dc34b {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal"} -C3N-02494.WGS.T C3N-02494 LSCC WGS tumor CPT0234790006 CPT0234790006.WholeGenome.RP-1303.bam 117293241481 BAM aligned CPTAC3 84ba0d9c-536a-4597-b5e1-724a9e5ffcb6 66148df4cea9656da19de76964eb3d3d {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor"} -C3N-02494.WGS.T.hg38 C3N-02494 LSCC WGS tumor CPT0234790006 2683741f-4fc1-413d-89e4-8b0e31b781a4_wgs_gdc_realn.bam 169361724640 BAM harmonized CPTAC3 2e3ebcb1-084c-460a-b185-eeff03a0198e c862e2908bc737635a2fcf4468d40440 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor"} -C3N-02494.WXS.A C3N-02494 LSCC WXS tissue_normal CPT0234820009 CPT0234820009.WholeExome.RP-1303.bam 16810725755 BAM aligned CPTAC3 17cb0049-202e-4175-97c6-fdb470504980 3a1f704669e4eefb1040360e694245b5 {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.WXS.A.hg38 C3N-02494 LSCC WXS tissue_normal CPT0234820009 937f5fa0-cd40-4406-8a58-46e092c097ba_wxs_gdc_realn.bam 23901856703 BAM harmonized CPTAC3 8cb7d343-fad8-4e82-9428-38bdd5a074b2 a11e348636a4bd2070b5755616d4f21b {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02494.WXS.N C3N-02494 LSCC WXS blood_normal CPT0234910002 CPT0234910002.WholeExome.RP-1303.bam 26780799044 BAM aligned CPTAC3 4da8a268-49cc-48f3-9234-7fa1a47a76c3 16776f304b9e2f3ac2cad8aa263a4f31 {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal"} -C3N-02494.WXS.N.hg38 C3N-02494 LSCC WXS blood_normal CPT0234910002 826b8522-ba14-49a4-9de2-476a38a1f58b_wxs_gdc_realn.bam 37573028390 BAM harmonized CPTAC3 88f0822d-0b68-4b77-95b0-f912e0b85cbd 5fb952da1dcbdeeaa905c0552046e45d {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal"} -C3N-02494.WXS.T C3N-02494 LSCC WXS tumor CPT0234790006 CPT0234790006.WholeExome.RP-1303.bam 21801153704 BAM aligned CPTAC3 2d886372-24a0-4c81-8cdf-5838d4d76474 f4da279d9d3dce49e5b2bf3b496449f1 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor"} -C3N-02494.WXS.T.hg38 C3N-02494 LSCC WXS tumor CPT0234790006 2683741f-4fc1-413d-89e4-8b0e31b781a4_wxs_gdc_realn.bam 30211694514 BAM harmonized CPTAC3 81e52b68-d374-46d2-8530-b0c1c2877da7 61a46b1b7d1cb0dca99eb6b15038cb19 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor"} -C3N-02523.MethArray.Green.A C3N-02523 LSCC Methylation_Array tissue_normal CPT0234950010 203220070151_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b1fa8a36-3768-427b-9185-aece10ad435d f52dbf94899c167f77d61a6179152797 {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.MethArray.Green.T C3N-02523 LSCC Methylation_Array tumor CPT0234930007 203219670141_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3dfb7e2c-fc76-42da-aabe-fb3066c8b05f ba9c0a12669763f6bdcd4204933405a6 {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor"} -C3N-02523.MethArray.Red.A C3N-02523 LSCC Methylation_Array tissue_normal CPT0234950010 203220070151_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 7d6cb38b-4b6f-4400-a41e-77de9a2adc92 6a6b130c8d6d72722134530c29248ff7 {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.MethArray.Red.T C3N-02523 LSCC Methylation_Array tumor CPT0234930007 203219670141_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 41f22c4c-b0a2-4141-9fa7-09da6a0f7e58 2c450093da4833c3ccb2f94acd57d936 {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor"} -C3N-02523.miRNA-Seq.A.hg38 C3N-02523 LSCC miRNA-Seq tissue_normal CPT0234950007 703e8fb6-a3b9-46fe-ad9d-192132cdb7a1_mirnaseq_gdc_realn.bam 215458283 BAM harmonized CPTAC3 fa0a8ed7-b236-433d-8bf3-4610da579060 a512121a23e592541d443097075572c9 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.miRNA-Seq.S2_L005_R1.A C3N-02523 LSCC miRNA-Seq tissue_normal CPT0234950007 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L005_R1_001.unaln.bam 193176841 BAM S2_L005_R1 unaligned CPTAC3 247e13be-20a4-47cc-bc06-8fccf78d7f6a e406c4a3819c7fe30fb1700e0d089708 {"aliquot_tag": "ALQ_3d7a1fa0", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.miRNA-Seq.S32_L004_R1.T C3N-02523 LSCC miRNA-Seq tumor CPT0234930010 190206_UNC31-K00269_0191_AH2WY5BBXY_GTAGAG_S32_L004_R1_001.unaln.bam 178292082 BAM S32_L004_R1 unaligned CPTAC3 65228a20-683c-45ab-a4ae-89acfa544355 9b046943dff96866d7e0729552b2a04a {"aliquot_tag": "ALQ_35454ee2", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02523.miRNA-Seq.T.hg38 C3N-02523 LSCC miRNA-Seq tumor CPT0234930010 a2c199ad-7185-449a-b745-bbc169c1eab8_mirnaseq_gdc_realn.bam 200536674 BAM harmonized CPTAC3 cdc9b04c-fe23-49c0-b625-1a31db37921c a73212e532443eaa17e4a8f63ec3b3fd {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor"} -C3N-02523.RNA-Seq.chimeric.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.chimeric.gdc_realn.bam 354241711 BAM chimeric harmonized CPTAC3 4cb78810-546b-4a2c-8fd7-7d101f2ee17e 24fead17f0a258dd8e0c9e2b077557c1 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.RNA-Seq.chimeric.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.chimeric.gdc_realn.bam 169853205 BAM chimeric harmonized CPTAC3 3aca9019-a283-481d-be69-6bcbfc856057 d51fc722c48b61f138656a88d78c7473 {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor"} -C3N-02523.RNA-Seq.genomic.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.genomic.gdc_realn.bam 9246631727 BAM genomic harmonized CPTAC3 423ff3ef-6001-49b4-836d-a5f9d63948d3 506dc0c983edd4bcdc28a628022f80c9 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.RNA-Seq.genomic.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.genomic.gdc_realn.bam 9512638289 BAM genomic harmonized CPTAC3 2e8319ca-615e-48a5-94a1-2954213c378c f32a0d07aed30eb6c4cd8687467e91e1 {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor"} -C3N-02523.RNA-Seq.S18_L005_R1.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R1_001.fastq.gz 4428688721 FASTQ S18_L005_R1 unaligned CPTAC3 eddb9e49-7438-478e-912b-aa8032c9fcb3 4e3328569bb3e234453cc2124d2aadac {"aliquot_tag": "ALQ_3d7a1fa0", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.RNA-Seq.S18_L005_R2.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R2_001.fastq.gz 4829470349 FASTQ S18_L005_R2 unaligned CPTAC3 e6379fdb-c1fd-47fe-b7a2-c2932b349cdb ea2b59c96381ff2a547197022c7caaa4 {"aliquot_tag": "ALQ_3d7a1fa0", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.RNA-Seq.S4_L001_R1.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R1_001.fastq.gz 4473182327 FASTQ S4_L001_R1 unaligned CPTAC3 7fcf5000-c1b8-40fb-9cad-62e04700cd75 3c2aa91ec4a5ba6c1f02fb3edc9b2074 {"aliquot_tag": "ALQ_35454ee2", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02523.RNA-Seq.S4_L001_R2.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R2_001.fastq.gz 5144091952 FASTQ S4_L001_R2 unaligned CPTAC3 cb2c0f2f-c163-4515-94a8-93446e8e92d8 44227cc7bfda4e3fd88099cf77a8b937 {"aliquot_tag": "ALQ_35454ee2", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02523.RNA-Seq.transcriptome.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.transcriptome.gdc_realn.bam 10125113506 BAM transcriptome harmonized CPTAC3 bb3874ce-c4e8-448d-aba6-64c633c57e95 f7c68e3ebd2cd6389bfae6a7abc7fe54 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.RNA-Seq.transcriptome.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.transcriptome.gdc_realn.bam 11787662070 BAM transcriptome harmonized CPTAC3 084f4ba4-548f-4808-bfdc-96af078f0933 2b854a4f2851a8a69150ea2bf8b312d5 {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor"} -C3N-02523.WGS.N C3N-02523 LSCC WGS blood_normal CPT0235050002 CPT0235050002.WholeGenome.RP-1303.bam 115887155848 BAM aligned CPTAC3 f460b8a7-65d8-4a6f-8522-14b306c317f1 11f7c50cb5099599e93d55aba829b625 {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal"} -C3N-02523.WGS.N.hg38 C3N-02523 LSCC WGS blood_normal CPT0235050002 d3898b9b-e275-4f84-b7ad-808669463672_wgs_gdc_realn.bam 167109332575 BAM harmonized CPTAC3 73b16f58-41fe-44ef-b653-b881d70a5894 1e37189207e9dbf3e66d0f7d2146504e {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal"} -C3N-02523.WGS.T C3N-02523 LSCC WGS tumor CPT0234930007 CPT0234930007.WholeGenome.RP-1303.bam 106991827070 BAM aligned CPTAC3 5a6605c3-ce91-4f4a-aa27-dd87aaf3ba60 db77f8a6d6ebcf3553dd514e2d57c51d {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor"} -C3N-02523.WGS.T.hg38 C3N-02523 LSCC WGS tumor CPT0234930007 f05424ce-b910-4564-b808-a01185fe69cf_wgs_gdc_realn.bam 154515533787 BAM harmonized CPTAC3 7fbe618d-a42a-4b83-9449-12eacb7657f7 a775a9b6140ce11d47b3a2d2fdc97b12 {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor"} -C3N-02523.WXS.A C3N-02523 LSCC WXS tissue_normal CPT0234950010 CPT0234950010.WholeExome.RP-1303.bam 23994624145 BAM aligned CPTAC3 eac0e3dd-dc97-4fb5-ae3e-b458f6a8cada 3f07c9d1b91aa5d538f994bbdaadfc9e {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.WXS.A.hg38 C3N-02523 LSCC WXS tissue_normal CPT0234950010 742aa38c-6552-4ede-ac43-b23b606dbc14_wxs_gdc_realn.bam 32850699327 BAM harmonized CPTAC3 2222422b-0651-42de-83e3-0f9432f909d2 1ecc08ba9ee1ea3c8d5e68e1cf2e6b5d {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02523.WXS.N C3N-02523 LSCC WXS blood_normal CPT0235050002 CPT0235050002.WholeExome.RP-1303.bam 27050418579 BAM aligned CPTAC3 d25c68d5-dfc5-4884-86c4-77c6653787b9 f74a0c0651cbd4c9f2a625c091234bf9 {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal"} -C3N-02523.WXS.N.hg38 C3N-02523 LSCC WXS blood_normal CPT0235050002 d3898b9b-e275-4f84-b7ad-808669463672_wxs_gdc_realn.bam 37065582918 BAM harmonized CPTAC3 2a16a8dd-0c7c-4547-b6cc-d988914d21fc fdeb986153aeae78d2cebed531632ff1 {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal"} -C3N-02523.WXS.T C3N-02523 LSCC WXS tumor CPT0234930007 CPT0234930007.WholeExome.RP-1303.bam 24301675895 BAM aligned CPTAC3 c30a2196-242c-4fde-901c-0269183169ff ecc858099fe1cdcd730c25c10e17e55b {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor"} -C3N-02523.WXS.T.hg38 C3N-02523 LSCC WXS tumor CPT0234930007 f05424ce-b910-4564-b808-a01185fe69cf_wxs_gdc_realn.bam 33980146354 BAM harmonized CPTAC3 bfcc212e-71c1-49b1-ab06-07a05fa31676 31e21f3839c9fe7057a1ec4f04acbcee {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor"} -C3N-02529.MethArray.Green.A C3N-02529 LUAD Methylation_Array tissue_normal CPT0147500009 203219670019_R03C01_Grn.idat 13676232 IDAT Green NA CPTAC3 38a9ff0d-ee51-4f09-90ac-0b2e6f2280f9 88c477832dc5884949621ef25a34f03c {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.MethArray.Green.T C3N-02529 LUAD Methylation_Array tumor CPT0147480010 203219650136_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 872372e7-110f-4a41-9052-f8621e2b153d f6e1ed86cdbbfb46cf695c175f27a94d {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor"} -C3N-02529.MethArray.Red.A C3N-02529 LUAD Methylation_Array tissue_normal CPT0147500009 203219670019_R03C01_Red.idat 13676232 IDAT Red NA CPTAC3 f566eb71-f9cf-4234-a4fe-c8b782399bd1 78c2ab22b23b8136563fffe174a065a2 {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.MethArray.Red.T C3N-02529 LUAD Methylation_Array tumor CPT0147480010 203219650136_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 f0dfd2b9-f90a-4a44-a47c-041b5e1734de b9e069c3ed97597841d3b373cd98e2df {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor"} -C3N-02529.miRNA-Seq.A.hg38 C3N-02529 LUAD miRNA-Seq tissue_normal CPT0147500006 002c41c2-6c2f-4f42-ae9c-430e23a9d5fe_mirnaseq_gdc_realn.bam 235427424 BAM harmonized CPTAC3 a1ab1a46-68d6-448d-9230-1fb5aa42b165 47302baa9dd2122e04b5c1cd9ebd3dc2 {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.miRNA-Seq.S17_L003_R1.T C3N-02529 LUAD miRNA-Seq tumor CPT0147480007 181108_UNC31-K00269_0162_AH255GBBXY_GACGAC_S17_L003_R1_001.unaln.bam 212000750 BAM S17_L003_R1 unaligned CPTAC3 349c89fe-d649-4cb9-9467-e92ab00edb19 814529855a3b3a2c0d30340163939eee {"aliquot_tag": "ALQ_7bd4e78e", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02529.miRNA-Seq.S8_L003_R1.A C3N-02529 LUAD miRNA-Seq tissue_normal CPT0147500006 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L003_R1_001.unaln.bam 212003475 BAM S8_L003_R1 unaligned CPTAC3 182e21ae-51f7-4ef0-9810-30aa73cfbe12 4a2a9ba2d8093b4b78d461ee94435e38 {"aliquot_tag": "ALQ_f7ff4f7c", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.miRNA-Seq.T.hg38 C3N-02529 LUAD miRNA-Seq tumor CPT0147480007 e03fb7fd-b1e2-44d6-9dee-97504204be23_mirnaseq_gdc_realn.bam 230001959 BAM harmonized CPTAC3 d9a7bba1-177c-4cc7-8eff-f4ee03ba5784 0613eba3cd332334ac9f225bc2ad5bae {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor"} -C3N-02529.RNA-Seq.chimeric.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.chimeric.gdc_realn.bam 79805748 BAM chimeric harmonized CPTAC3 8f0f675c-648a-4cea-9ba9-101c7a35b2f3 1b48e16af85646119d1c24da2bbc63f1 {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.RNA-Seq.chimeric.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.chimeric.gdc_realn.bam 50359661 BAM chimeric harmonized CPTAC3 8874cd60-73ec-4891-ab6d-cd7cdf4619a7 b9c94cb3f5edbc1b6a385f55119babf9 {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor"} -C3N-02529.RNA-Seq.genomic.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.genomic.gdc_realn.bam 9016869023 BAM genomic harmonized CPTAC3 5462693c-dd8d-47cb-9812-15b628b414a3 a72b97eb4c7f7e2a982c7a0df4e887de {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.RNA-Seq.genomic.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.genomic.gdc_realn.bam 8682101727 BAM genomic harmonized CPTAC3 a2f44320-2f78-4b91-a8b1-4d225c0aa395 6d443692e3b182a42133c7b3fafa3a8a {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor"} -C3N-02529.RNA-Seq.S1_L001_R1.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R1_001.fastq.gz 4082705048 FASTQ S1_L001_R1 unaligned CPTAC3 0d16714e-8922-46ff-b066-0d0ba69a634c 558fb913912f59273e8450b9f8ab20f1 {"aliquot_tag": "ALQ_f7ff4f7c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.RNA-Seq.S1_L001_R2.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R2_001.fastq.gz 4519942921 FASTQ S1_L001_R2 unaligned CPTAC3 654448c0-1187-46b9-88cc-ea204b93a332 1bcc55be394d4980884e05af6ffc99a2 {"aliquot_tag": "ALQ_f7ff4f7c", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.RNA-Seq.S4_L007_R1.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R1_001.fastq.gz 4003752681 FASTQ S4_L007_R1 unaligned CPTAC3 84d3b452-6532-4edb-b8aa-9adb99a90607 1948f8f19ded82963009205720ef8a19 {"aliquot_tag": "ALQ_7bd4e78e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02529.RNA-Seq.S4_L007_R2.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R2_001.fastq.gz 4348550616 FASTQ S4_L007_R2 unaligned CPTAC3 e95a3b9d-018e-4bc9-98d1-afb241b0d4ba 2a6de991c74267f956bd92faba122187 {"aliquot_tag": "ALQ_7bd4e78e", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02529.RNA-Seq.transcriptome.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.transcriptome.gdc_realn.bam 10598106692 BAM transcriptome harmonized CPTAC3 9847ff2b-4e4e-4b35-978a-4f0da72d34ce 046618ca221b80ad700dccf3c6ecfbb1 {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.RNA-Seq.transcriptome.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.transcriptome.gdc_realn.bam 10929931923 BAM transcriptome harmonized CPTAC3 bd4bc38e-8820-4326-b034-c952e8eb5e06 ab1749817ad430a3d5be1be4c3bccbc9 {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor"} -C3N-02529.WGS.A C3N-02529 LUAD WGS tissue_normal CPT0147500009 CPT0147500009.WholeGenome.RP-1303.bam 61312758740 BAM aligned CPTAC3 3ec03c26-4933-41be-b3d0-e6dc60713ab1 22c901aa2b1c9a927302e21e2817ebf8 {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.WGS.A.hg38 C3N-02529 LUAD WGS tissue_normal CPT0147500009 6b3df7a3-49c3-44c1-9496-030df7e028b9_wgs_gdc_realn.bam 90278508515 BAM harmonized CPTAC3 942a8f34-9df9-4652-b255-f798291e99e7 5508cbd7f3dd732343dc4c167513e1ca {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.WGS.N C3N-02529 LUAD WGS blood_normal CPT0147510002 CPT0147510002.WholeGenome.RP-1303.bam 59526316788 BAM aligned CPTAC3 a4755d73-7af5-4134-a634-17497c8aa819 283d91bc24f3718fb4cdc72354369e1b {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02529.WGS.N.hg38 C3N-02529 LUAD WGS blood_normal CPT0147510002 f5d583a7-082d-4092-8fe4-98747800f95d_wgs_gdc_realn.bam 87551896214 BAM harmonized CPTAC3 e52a2f34-d3d1-4a00-9669-b9f670b4ac8a b4f29e072ef6e94d625b3e686e6ceb2b {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02529.WGS.T C3N-02529 LUAD WGS tumor CPT0147480010 CPT0147480010.WholeGenome.RP-1303.bam 64957545876 BAM aligned CPTAC3 c1c4cdc4-15b2-47d5-b248-5e205eda040d c1e2278e36891d28b3e3f53d22a4cf90 {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor"} -C3N-02529.WGS.T.hg38 C3N-02529 LUAD WGS tumor CPT0147480010 3fa7720d-8632-4e9f-8de8-a87db733f78c_wgs_gdc_realn.bam 95339830419 BAM harmonized CPTAC3 43b89f28-f040-4a26-9e58-f3f8fc39a7a6 6ee94a295d8aff8257d85f822dd2f7bd {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor"} -C3N-02529.WXS.A C3N-02529 LUAD WXS tissue_normal CPT0147500009 CPT0147500009.WholeExome.RP-1303.bam 24067337547 BAM aligned CPTAC3 46200d0c-e739-4e0a-9246-3f8586d263b8 2b326fcbf4c95f3ca2299d54baade9e9 {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.WXS.A.hg38 C3N-02529 LUAD WXS tissue_normal CPT0147500009 6b3df7a3-49c3-44c1-9496-030df7e028b9_wxs_gdc_realn.bam 32128293353 BAM harmonized CPTAC3 f1ea9160-8ee0-4197-865b-3a7407c88354 dd7bd2d1bac9115c2582fe0d61de04ca {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02529.WXS.N C3N-02529 LUAD WXS blood_normal CPT0147510002 CPT0147510002.WholeExome.RP-1303.bam 29107147490 BAM aligned CPTAC3 f5f7caa0-6a8b-4167-b782-72550bb3869b 74abd07c4ed696aed051f490f9d733f5 {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02529.WXS.N.hg38 C3N-02529 LUAD WXS blood_normal CPT0147510002 f5d583a7-082d-4092-8fe4-98747800f95d_wxs_gdc_realn.bam 40105068850 BAM harmonized CPTAC3 786a2fc7-afa1-4450-969a-add3699c2d27 20e251289d04b8921aa84ea9ec62f778 {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02529.WXS.T C3N-02529 LUAD WXS tumor CPT0147480010 CPT0147480010.WholeExome.RP-1303.bam 31228828607 BAM aligned CPTAC3 5ca02229-de2d-4d95-8866-dae9c453e463 bdd50fd6d53f37da3933ac39de7640b2 {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor"} -C3N-02529.WXS.T.hg38 C3N-02529 LUAD WXS tumor CPT0147480010 3fa7720d-8632-4e9f-8de8-a87db733f78c_wxs_gdc_realn.bam 42705672042 BAM harmonized CPTAC3 3f43c4e0-6953-43ec-9a3d-0ae095105fa1 d6c4507d5390880839c7f775edd43da6 {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor"} -C3N-02572.MethArray.Green.A C3N-02572 LUAD Methylation_Array tissue_normal CPT0147600009 203220070100_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 78cb9f7e-0f5a-4bf7-9a27-16a759292d44 efa4f596dcfaab5c068b143fa1c98324 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.MethArray.Green.T C3N-02572 LUAD Methylation_Array tumor CPT0147580010 203027380028_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d629aa9c-092e-4743-a544-0bc60e0a357f f6aca92134eaec1be6dcca6568b4c0b9 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor"} -C3N-02572.MethArray.Red.A C3N-02572 LUAD Methylation_Array tissue_normal CPT0147600009 203220070100_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 7e59972f-8852-4064-a954-fee70d9fac20 fac79974fdfd5b65036193191859fa53 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.MethArray.Red.T C3N-02572 LUAD Methylation_Array tumor CPT0147580010 203027380028_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 2f55cf3c-d4c5-48ff-9d16-9e1bdd3b9731 6493ccd773c5a54ce38b0083e6eb9fc6 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor"} -C3N-02572.miRNA-Seq.A.hg38 C3N-02572 LUAD miRNA-Seq tissue_normal CPT0147600006 b5680499-1909-49e3-bb11-4a417a2b7dac_mirnaseq_gdc_realn.bam 216744242 BAM harmonized CPTAC3 ff7c1d74-7252-4c24-9dd0-c01148943009 d9d360e618d6a6bf46da1f72df8bae87 {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.miRNA-Seq.S18_L003_R1.T C3N-02572 LUAD miRNA-Seq tumor CPT0147580007 181108_UNC31-K00269_0162_AH255GBBXY_TAATCG_S18_L003_R1_001.unaln.bam 217038795 BAM S18_L003_R1 unaligned CPTAC3 0138e77f-54d2-4e03-84a8-f7da6c4806cd fc517da3df00efdb1d347450407f0f52 {"aliquot_tag": "ALQ_b088342b", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02572.miRNA-Seq.S9_L003_R1.A C3N-02572 LUAD miRNA-Seq tissue_normal CPT0147600006 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L003_R1_001.unaln.bam 192236713 BAM S9_L003_R1 unaligned CPTAC3 8d07b3a0-92f2-40b9-874b-4cd077a846e0 eb6626146d5066f2be4f34d8f9c795ee {"aliquot_tag": "ALQ_716b3dd2", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.miRNA-Seq.T.hg38 C3N-02572 LUAD miRNA-Seq tumor CPT0147580007 7a43a955-f7ac-4c67-ab9c-bac03efaab13_mirnaseq_gdc_realn.bam 237877999 BAM harmonized CPTAC3 c61837c1-ce6a-49bc-abf0-c404509eb42b fb8c91a484fd9d55c8f941b690cb517f {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor"} -C3N-02572.RNA-Seq.chimeric.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.chimeric.gdc_realn.bam 64434030 BAM chimeric harmonized CPTAC3 bc82bba1-3029-4420-9ff3-b6faef8900bd c735b8894f2376adf4b6dd400c942d92 {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.RNA-Seq.chimeric.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.chimeric.gdc_realn.bam 42503047 BAM chimeric harmonized CPTAC3 1aed8c56-c11d-4c9f-98bb-155e9a5905d0 00d00e9d2047819f4aa8b23656980b88 {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor"} -C3N-02572.RNA-Seq.genomic.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.genomic.gdc_realn.bam 6485207222 BAM genomic harmonized CPTAC3 9ebf81f1-64c2-48cf-a363-05bbb0a7148c 9f8ed01aea7b0b71c00044cadd5a6f27 {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.RNA-Seq.genomic.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.genomic.gdc_realn.bam 8651981783 BAM genomic harmonized CPTAC3 2e905be0-f92a-4865-a380-47b2bd7fa45e fcf35d756f63ae10ccd2405a7293f476 {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor"} -C3N-02572.RNA-Seq.S23_L006_R1.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 4040981378 FASTQ S23_L006_R1 unaligned CPTAC3 bc10b6b0-67c4-4698-8ec0-ded169a99a3d 1ed85db9dc0bf0b70355e2781177584a {"aliquot_tag": "ALQ_b088342b", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02572.RNA-Seq.S23_L006_R2.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 4160211180 FASTQ S23_L006_R2 unaligned CPTAC3 5baffbc9-00eb-43de-9948-317662cc6ed6 8a065674ac25e705f4be61380eed17dc {"aliquot_tag": "ALQ_b088342b", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02572.RNA-Seq.S4_L001_R1.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R1_001.fastq.gz 3056501435 FASTQ S4_L001_R1 unaligned CPTAC3 be7f9664-ce33-4b9b-aec5-03249a75ea9f 0c1f0062f4a700d95378adc5be680fa8 {"aliquot_tag": "ALQ_716b3dd2", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.RNA-Seq.S4_L001_R2.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R2_001.fastq.gz 3389884363 FASTQ S4_L001_R2 unaligned CPTAC3 37830f1f-1ff1-41ae-af24-91010de7eb1a 975dccfa514aaff43de359542b502cd1 {"aliquot_tag": "ALQ_716b3dd2", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.RNA-Seq.transcriptome.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.transcriptome.gdc_realn.bam 7478467209 BAM transcriptome harmonized CPTAC3 da12f96e-02b5-41ee-87f8-0a49bf35bf78 3fff0b96ec3b1aa3730620e166ebc76a {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.RNA-Seq.transcriptome.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.transcriptome.gdc_realn.bam 9963082517 BAM transcriptome harmonized CPTAC3 ac10974b-8e44-4552-8fc4-b9527530f43d f52bc83083e022588ea7a49f241c7c86 {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor"} -C3N-02572.WGS.A C3N-02572 LUAD WGS tissue_normal CPT0147600009 CPT0147600009.WholeGenome.RP-1303.bam 61272354419 BAM aligned CPTAC3 d2e68eee-60f4-42d7-901f-b7bb5a5f8e91 d91229d3e73c48e10d36624c0cd61d5d {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.WGS.A.hg38 C3N-02572 LUAD WGS tissue_normal CPT0147600009 476aee9b-cbb5-41de-b8e6-25f78d860639_wgs_gdc_realn.bam 92203457250 BAM harmonized CPTAC3 b2dea3fc-1891-404d-ba01-3c520b816357 5a2b4c6460ffc4e81ab1ae659f9fe7fd {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.WGS.N C3N-02572 LUAD WGS blood_normal CPT0147610002 CPT0147610002.WholeGenome.RP-1303.bam 56979214213 BAM aligned CPTAC3 0c3b4ced-29d4-4cca-9ef7-1213f81e35df 59a2096c1cfd59e8fa40d207699287c7 {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02572.WGS.N.hg38 C3N-02572 LUAD WGS blood_normal CPT0147610002 ad8eca4d-0dd4-4e8f-b143-2e59ec41059d_wgs_gdc_realn.bam 82634035288 BAM harmonized CPTAC3 b168ed6b-6a75-48b5-b9c9-caa8c194e3e5 8c1109aff03f3f5ef365f88df5a46e1a {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02572.WGS.T C3N-02572 LUAD WGS tumor CPT0147580010 CPT0147580010.WholeGenome.RP-1303.bam 62516152898 BAM aligned CPTAC3 ec8578cc-3892-4b1c-a40d-98c69442504b 659a3b1c330fd605d283741d8e60370d {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor"} -C3N-02572.WGS.T.hg38 C3N-02572 LUAD WGS tumor CPT0147580010 59f39740-a3f7-4c94-bcfa-ee614860b0bd_wgs_gdc_realn.bam 91742551628 BAM harmonized CPTAC3 9709ebc2-df28-47db-849b-1d2f6e5d6fc4 311958055c6159bcce12f5d407a6cbaf {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor"} -C3N-02572.WXS.A C3N-02572 LUAD WXS tissue_normal CPT0147600009 CPT0147600009.WholeExome.RP-1303.bam 25961678728 BAM aligned CPTAC3 7e9e75d7-7eb5-41e0-ac9c-8c293ddd136a 29bbf6f3a108d333681fc7494588c772 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.WXS.A.hg38 C3N-02572 LUAD WXS tissue_normal CPT0147600009 476aee9b-cbb5-41de-b8e6-25f78d860639_wxs_gdc_realn.bam 34589845123 BAM harmonized CPTAC3 91ca5f89-aa04-4e1f-9371-236ec0dd35ee 843fff3e996836085d136680ffd858c0 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02572.WXS.N C3N-02572 LUAD WXS blood_normal CPT0147610002 CPT0147610002.WholeExome.RP-1303.bam 23671579912 BAM aligned CPTAC3 c23bca65-a070-45fa-9254-13fc661b92b1 af31ec2be7402dcfb9d6abff7535fc52 {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02572.WXS.N.hg38 C3N-02572 LUAD WXS blood_normal CPT0147610002 ad8eca4d-0dd4-4e8f-b143-2e59ec41059d_wxs_gdc_realn.bam 31362321035 BAM harmonized CPTAC3 2ad0e396-dc6e-40ad-8709-097976ab1ccc b0c0701a1d37a8dc5d8f6f7b9307599d {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02572.WXS.T C3N-02572 LUAD WXS tumor CPT0147580010 CPT0147580010.WholeExome.RP-1303.bam 23685713350 BAM aligned CPTAC3 7bac7219-d6ef-4daf-9e75-b86ea8bad4a6 8872182c6e37bc4f73ef4328e1fd1107 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor"} -C3N-02572.WXS.T.hg38 C3N-02572 LUAD WXS tumor CPT0147580010 59f39740-a3f7-4c94-bcfa-ee614860b0bd_wxs_gdc_realn.bam 32179096356 BAM harmonized CPTAC3 a03ec155-35f2-4a47-be49-8f5537271a7f 86d2046890ebe931c4505193752d7a17 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor"} -C3N-02573.MethArray.Green.T C3N-02573 PDA Methylation_Array tumor CPT0183450008 203561450025_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 dd0303ba-48fd-4a59-873d-4b1080802b3f d1d9c75395694e718c60bfb22f896281 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor"} -C3N-02573.MethArray.Red.T C3N-02573 PDA Methylation_Array tumor CPT0183450008 203561450025_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 ede867f5-207c-4cca-83a2-f4c4abc2e5b3 bcfcb6e7260f649c31c88bdb2bc700e1 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor"} -C3N-02573.miRNA-Seq.S18_L006_R1.T C3N-02573 PDA miRNA-Seq tumor CPT0183450011 190712_UNC32-K00270_0192_BH7HL3BBXY_TAATCG_S18_L006_R1_001.unaln.bam 204662076 BAM S18_L006_R1 unaligned CPTAC3 449b1224-de4e-4dd0-920d-2b041b7f8826 4dfd5f8f32e164accdcf668ea6a6ab91 {"aliquot_tag": "ALQ_d0dc8617", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02573.miRNA-Seq.T.hg38 C3N-02573 PDA miRNA-Seq tumor CPT0183450011 fc47ff09-3067-4751-925a-c6436aac7dab_mirnaseq_gdc_realn.bam 232658937 BAM harmonized CPTAC3 41668b57-5a93-4573-b30b-8b40777594ad b3827e86645e647efce84a6019a4bef0 {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor"} -C3N-02573.RNA-Seq.chimeric.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.chimeric.gdc_realn.bam 49773356 BAM chimeric harmonized CPTAC3 06e4f396-21ab-4cf9-a716-cc94606eb3d0 441079725dd93ee9f127e84dff6a4548 {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor"} -C3N-02573.RNA-Seq.genomic.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.genomic.gdc_realn.bam 9746990781 BAM genomic harmonized CPTAC3 f07eb643-9b55-4571-84be-e6c1203fa475 39b1d3f943f64677aad8911d31869e6d {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor"} -C3N-02573.RNA-Seq.S10_L003_R1.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3999602643 FASTQ S10_L003_R1 unaligned CPTAC3 55c288e5-b38d-459b-bfef-da66a25b59ec c0227be34c258d1476714bb325afd68f {"aliquot_tag": "ALQ_d0dc8617", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02573.RNA-Seq.S10_L003_R2.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4446247729 FASTQ S10_L003_R2 unaligned CPTAC3 51cd1a61-40ad-4a11-8a9f-59674a76b4ca 58172d00a3167e17630071a6ac237985 {"aliquot_tag": "ALQ_d0dc8617", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02573.RNA-Seq.transcriptome.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.transcriptome.gdc_realn.bam 10159279857 BAM transcriptome harmonized CPTAC3 a31a1c91-ea22-439a-80e2-0f3ee9ba34dc 08ba2ad0f8b05d5c9d5ac293b344993a {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor"} -C3N-02573.WGS.N C3N-02573 PDA WGS blood_normal CPT0183510002 CPT0183510002.WholeGenome.RP-1303.bam 86506713400 BAM aligned CPTAC3 1b57de94-25ec-4dfa-81b8-fd019c919578 f3f929da3e54371a88c6124fcbdfd4e6 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02573.WGS.N.hg38 C3N-02573 PDA WGS blood_normal CPT0183510002 935b0c08-6d0d-427b-8161-738fda126ac0_wgs_gdc_realn.bam 125831158753 BAM harmonized CPTAC3 773bac6f-f93d-4725-a0f9-4ea36c8a6f95 f9e20711b91de6964847f5a67f3db782 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02573.WGS.T C3N-02573 PDA WGS tumor CPT0183450008 CPT0183450008.WholeGenome.RP-1303.bam 146522874019 BAM aligned CPTAC3 26320d19-1e99-47fa-8b72-c30da58a8430 4ca9b1f9076fc203c023dc5a5d5d079d {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor"} -C3N-02573.WGS.T.hg38 C3N-02573 PDA WGS tumor CPT0183450008 09bdd740-6032-4adf-b829-b3e04b05bf3c_wgs_gdc_realn.bam 216847327716 BAM harmonized CPTAC3 f27fef19-dcf8-4de0-a185-abe201f7ba1b e051b6d65e4158551c6a84ce39694509 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor"} -C3N-02573.WXS.N C3N-02573 PDA WXS blood_normal CPT0183510002 CPT0183510002.WholeExome.RP-1303.bam 28186735130 BAM aligned CPTAC3 bd2224fb-95f2-4e9f-9047-34eb792c3e43 0e3c260622e4ec64d6b6dcb14fb66764 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02573.WXS.N.hg38 C3N-02573 PDA WXS blood_normal CPT0183510002 935b0c08-6d0d-427b-8161-738fda126ac0_wxs_gdc_realn.bam 38462419760 BAM harmonized CPTAC3 60dd2c65-b051-4d0f-afd1-ecc59eef3b51 e6815765c76c826ce8d32007820a9362 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal"} -C3N-02573.WXS.T C3N-02573 PDA WXS tumor CPT0183450008 CPT0183450008.WholeExome.RP-1303.bam 45701850754 BAM aligned CPTAC3 d3c16247-53bb-45ab-8f84-8e8762dee030 bff85f3eed80070bc22a612ba1e191cd {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor"} -C3N-02573.WXS.T.hg38 C3N-02573 PDA WXS tumor CPT0183450008 09bdd740-6032-4adf-b829-b3e04b05bf3c_wxs_gdc_realn.bam 63394719927 BAM harmonized CPTAC3 55d6e56f-521b-4467-bb59-655b458c74ae 22af737db88f2a5676bd4b5581380326 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor"} -C3N-02575.MethArray.Green.A C3N-02575 LSCC Methylation_Array tissue_normal CPT0147700006 203219640133_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1934db23-7fb9-40c8-8f4a-96979cb391ee e48dd2844e8426f38e783c2b8c0add1e {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.MethArray.Green.T C3N-02575 LSCC Methylation_Array tumor CPT0147680010 203219640157_R01C01_Grn.idat 13676228 IDAT Green NA CPTAC3 e8baedda-d9da-4613-960e-524fdc349143 be8c9f6f8bd8b35176bd287cb5e016e1 {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor"} -C3N-02575.MethArray.Red.A C3N-02575 LSCC Methylation_Array tissue_normal CPT0147700006 203219640133_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 a5aefdfb-3f32-47d0-a78d-5f6662a59139 c6c089141d464044308bd15cab059678 {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.MethArray.Red.T C3N-02575 LSCC Methylation_Array tumor CPT0147680010 203219640157_R01C01_Red.idat 13676228 IDAT Red NA CPTAC3 c3614361-5e3f-4b0d-a914-c667aa182ec8 28cc703f77cc62b5d2c5a3e519f4fbbf {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor"} -C3N-02575.miRNA-Seq.A.hg38 C3N-02575 LSCC miRNA-Seq tissue_normal CPT0147700009 893e211d-de9c-4734-a9c1-470f69e1b876_mirnaseq_gdc_realn.bam 230996275 BAM harmonized CPTAC3 361c57bc-c528-42b8-9719-eb6cc09c5d84 51eb493bb8e151d7d37572f99123bc1d {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.miRNA-Seq.S39_L002_R1.A C3N-02575 LSCC miRNA-Seq tissue_normal CPT0147700009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTCAGA_S39_L002_R1_001.unaln.bam 207464988 BAM S39_L002_R1 unaligned CPTAC3 31973d81-7249-47ec-8792-df62abe0535c 7febdc6334cbcea0aa19039dbc9e5091 {"aliquot_tag": "ALQ_2a88f3e6", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.RNA-Seq.chimeric.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.chimeric.gdc_realn.bam 28571309 BAM chimeric harmonized CPTAC3 37def7a5-fae0-4938-83c5-cea7d48c6239 b14216735e8906d6d90b103fca65c10c {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.RNA-Seq.chimeric.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.chimeric.gdc_realn.bam 22555736 BAM chimeric harmonized CPTAC3 2703efa8-b625-42e7-b3e1-3a851c5e0c8c 5c77fb8a57591ad74f22c7abf4b5382b {"aliquot_tag": "ALQ_361c4685", "gdc_sample_type": "Primary Tumor"} -C3N-02575.RNA-Seq.genomic.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.genomic.gdc_realn.bam 8212406155 BAM genomic harmonized CPTAC3 7e3077c3-fcdc-4248-91d3-13dcdc6cd2e3 381e11ba34f54c50315ea00cd6aa868f {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.RNA-Seq.genomic.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.genomic.gdc_realn.bam 6689313713 BAM genomic harmonized CPTAC3 e80000ea-665d-43b5-9cf6-880ee2d8fe28 9e3664ce3c92a5cdbf6601245a65946f {"aliquot_tag": "ALQ_361c4685", "gdc_sample_type": "Primary Tumor"} -C3N-02575.RNA-Seq.S24_L006_R1.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R1_001.fastq.gz 3833000070 FASTQ S24_L006_R1 unaligned CPTAC3 ab65576a-9a88-4d65-9e89-261656233b75 055f3afbdce443913978436b8413b4d6 {"aliquot_tag": "ALQ_2a88f3e6", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.RNA-Seq.S24_L006_R2.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4008984424 FASTQ S24_L006_R2 unaligned CPTAC3 dc38be81-3952-41c5-afd9-031991bf1733 7981223c2fc95a6b06976d64d24894d4 {"aliquot_tag": "ALQ_2a88f3e6", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.RNA-Seq.S6_L002_R1.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3050745078 FASTQ S6_L002_R1 unaligned CPTAC3 4cad37ba-3071-4267-935a-153757a0e8f1 97c09c298363c72d90a4044a445d041a {"aliquot_tag": "ALQ_361c4685", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02575.RNA-Seq.S6_L002_R2.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 3198833205 FASTQ S6_L002_R2 unaligned CPTAC3 c247ec6d-6d79-41a6-a973-cd44eb7c4457 009f6e9a4434c67de8c691dccd54cde3 {"aliquot_tag": "ALQ_361c4685", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02575.RNA-Seq.transcriptome.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.transcriptome.gdc_realn.bam 10186113264 BAM transcriptome harmonized CPTAC3 503d875a-c4f2-4b84-bb29-16dccf4a81b3 c93b8caae93900737e51a0c4daaacb55 {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.RNA-Seq.transcriptome.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.transcriptome.gdc_realn.bam 9307043446 BAM transcriptome harmonized CPTAC3 dc0290a5-fc91-4d0c-bd16-60401079271b cb8af499c6029c078080718cbb3fcd79 {"aliquot_tag": "ALQ_361c4685", "gdc_sample_type": "Primary Tumor"} -C3N-02575.WGS.A C3N-02575 LSCC WGS tissue_normal CPT0147700006 CPT0147700006.WholeGenome.RP-1303.bam 52409448964 BAM aligned CPTAC3 a206d830-86e3-4129-82e5-a29d64450e45 af855aa9642b5951e84b1898c998401c {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.WGS.A.hg38 C3N-02575 LSCC WGS tissue_normal CPT0147700006 9aa1d7b9-93fc-4f46-9124-e19c58382eed_wgs_gdc_realn.bam 76037232326 BAM harmonized CPTAC3 3a4d18e5-9d19-4494-81e4-e3a2a59b7e87 ede79785309e1e185cf1538e57c47d73 {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.WGS.N C3N-02575 LSCC WGS blood_normal CPT0147710002 CPT0147710002.WholeGenome.RP-1303.bam 61175564354 BAM aligned CPTAC3 8c9151b9-287f-41f6-95de-4770e3967fed 87415e99eb0e5bb048de7427661bf3c1 {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02575.WGS.N.hg38 C3N-02575 LSCC WGS blood_normal CPT0147710002 0d386142-f9ba-4144-b249-cc863cd80733_wgs_gdc_realn.bam 87571271106 BAM harmonized CPTAC3 087ff243-04f7-469f-8fa6-1eaae55e2e51 45222525f6655eb4a74ce17eaede1679 {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02575.WGS.T C3N-02575 LSCC WGS tumor CPT0147680010 CPT0147680010.WholeGenome.RP-1303.bam 60060264742 BAM aligned CPTAC3 0d336ab2-af20-4d5c-b9c0-7f065fc3dec0 85d5de267933525167f4a7c9c510750b {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor"} -C3N-02575.WGS.T.hg38 C3N-02575 LSCC WGS tumor CPT0147680010 c13bec2b-8009-4020-831a-4b6f51dfc6c4_wgs_gdc_realn.bam 86747873140 BAM harmonized CPTAC3 3c6274ad-fe2b-4c08-8b48-a4e48e82c3a0 531d99603929fef1485be8fc045a601b {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor"} -C3N-02575.WXS.A C3N-02575 LSCC WXS tissue_normal CPT0147700006 CPT0147700006.WholeExome.RP-1303.bam 23342945944 BAM aligned CPTAC3 c8e2f581-1193-4ea1-af8d-65676989293a 3c1f70841a0d8f5f51c050c2ecc9a37a {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.WXS.A.hg38 C3N-02575 LSCC WXS tissue_normal CPT0147700006 9aa1d7b9-93fc-4f46-9124-e19c58382eed_wxs_gdc_realn.bam 32094424280 BAM harmonized CPTAC3 5385328c-2012-4f3b-94c0-0787597dfa44 ccf71fb966c58e84cb7dcbd3dc075093 {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02575.WXS.N C3N-02575 LSCC WXS blood_normal CPT0147710002 CPT0147710002.WholeExome.RP-1303.bam 24543190299 BAM aligned CPTAC3 b4f0394b-89bf-4de3-bf1d-4cfce0f196d3 a7bf7a7db0346a59b540d3f3b91c7d98 {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02575.WXS.N.hg38 C3N-02575 LSCC WXS blood_normal CPT0147710002 0d386142-f9ba-4144-b249-cc863cd80733_wxs_gdc_realn.bam 33869950798 BAM harmonized CPTAC3 56807924-45f6-4cfb-9d3c-0852490bf541 73bbdc02ef5690422b38818c8f35e4dc {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02575.WXS.T C3N-02575 LSCC WXS tumor CPT0147680010 CPT0147680010.WholeExome.RP-1303.bam 38401750183 BAM aligned CPTAC3 664699dd-f5d8-410a-89eb-042824dd6f94 9202cc4539e2abeed9ea05122841a269 {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor"} -C3N-02575.WXS.T.hg38 C3N-02575 LSCC WXS tumor CPT0147680010 c13bec2b-8009-4020-831a-4b6f51dfc6c4_wxs_gdc_realn.bam 53457541421 BAM harmonized CPTAC3 59261408-9819-4d53-9558-24492ab78705 80cdda6cceb5e7c51f9e51256759bb85 {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor"} -C3N-02577.MethArray.Green.A C3N-02577 CCRCC Methylation_Array tissue_normal CPT0183570006 204930640065_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e9efc4fd-f8ed-434d-8a7c-bc59a1b7e3e2 f0edbb610325dc8ab7dcfba691360f45 {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.MethArray.Green.T C3N-02577 CCRCC Methylation_Array tumor CPT0183550007 203219650006_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 25fb2a16-3bee-4b74-871b-d660b6a47868 3a3aafda7ea1cc1c29cf734e5965f0f7 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor"} -C3N-02577.MethArray.Red.A C3N-02577 CCRCC Methylation_Array tissue_normal CPT0183570006 204930640065_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e852135e-eb85-4651-9286-0d6c874dc9dc 2579041d860abcbcd8965bd70a1ae26c {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.MethArray.Red.T C3N-02577 CCRCC Methylation_Array tumor CPT0183550007 203219650006_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 820d1eb7-769c-4991-bb16-5f0f8fc67361 89ba28b8a7a80027827d14d304f1fc5e {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor"} -C3N-02577.miRNA-Seq.A.hg38 C3N-02577 CCRCC miRNA-Seq tissue_normal CPT0183570009 462a4054-514c-489e-9a80-70a7b072e6fc_mirnaseq_gdc_realn.bam 230982850 BAM harmonized CPTAC3 427d96a3-b120-4ca3-974e-57da845e9930 e99abb913a4dca4783e55ad93c8cc4d5 {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.miRNA-Seq.S3_L006_R1.A C3N-02577 CCRCC miRNA-Seq tissue_normal CPT0183570009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L006_R1_001.unaln.bam 212933486 BAM S3_L006_R1 unaligned CPTAC3 f92e159c-13cb-4f7d-97d6-ebf1da360a7e db0106771e1a4c786a8117eb451e27be {"aliquot_tag": "ALQ_7680bfa1", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.miRNA-Seq.S40_L005_R1.T C3N-02577 CCRCC miRNA-Seq tumor CPT0183550010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L005_R1_001.unaln.bam 246691034 BAM S40_L005_R1 unaligned CPTAC3 bad88f81-11c4-4993-9b5b-de7c441bf408 d0b4830a578a6ebb3a8c16fd50221d3f {"aliquot_tag": "ALQ_6c876524", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02577.miRNA-Seq.T.hg38 C3N-02577 CCRCC miRNA-Seq tumor CPT0183550010 12327dca-0601-4e0b-83c6-810e0be22fd4_mirnaseq_gdc_realn.bam 277185419 BAM harmonized CPTAC3 fabc66fd-8aa1-45f0-8e12-317618127593 0f193c2c97e36c95db13488f8906c2b6 {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor"} -C3N-02577.RNA-Seq.chimeric.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.chimeric.gdc_realn.bam 72926643 BAM chimeric harmonized CPTAC3 043ba897-26ec-4535-9ce4-64c7988a2ff4 07f9cf2ea4b89729991a821eb0542039 {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.RNA-Seq.chimeric.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.chimeric.gdc_realn.bam 31607604 BAM chimeric harmonized CPTAC3 b3ecbe02-70aa-47d1-814c-8b6fa806d351 78692c1f05f1fc1d32dc061642dd7e00 {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor"} -C3N-02577.RNA-Seq.genomic.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.genomic.gdc_realn.bam 11886817077 BAM genomic harmonized CPTAC3 68ea9622-a6ed-4ebe-befa-bb9c83fa46d1 d62d194f7260a3894426265ec8bad97d {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.RNA-Seq.genomic.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.genomic.gdc_realn.bam 7116172794 BAM genomic harmonized CPTAC3 cb76ffa7-434b-479d-a33c-df77a207741a c7f070d8838c4fcff6032feb56dfa29f {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor"} -C3N-02577.RNA-Seq.S7_L008_R1.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R1_001.fastq.gz 3394962825 FASTQ S7_L008_R1 unaligned CPTAC3 985fe40f-089d-45d8-a08f-2010ef64767d 826a2ca7942a66d06b94499fcc7137da {"aliquot_tag": "ALQ_6c876524", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02577.RNA-Seq.S7_L008_R2.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R2_001.fastq.gz 3432400019 FASTQ S7_L008_R2 unaligned CPTAC3 60f7a910-a583-4531-9211-1fc3ee5b0509 9536ace9da86108e926b136ad7cb4e3e {"aliquot_tag": "ALQ_6c876524", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02577.RNA-Seq.S8_L002_R1.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R1_001.fastq.gz 5208304399 FASTQ S8_L002_R1 unaligned CPTAC3 469c3d80-5e8e-45b4-94f6-82310ac0be92 d9c24484c09386460fde6538953d204b {"aliquot_tag": "ALQ_7680bfa1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.RNA-Seq.S8_L002_R2.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R2_001.fastq.gz 5696280574 FASTQ S8_L002_R2 unaligned CPTAC3 9b52a605-7ff2-43f7-92a0-b4bd49e01385 e4f3effae5eb690b7f9e751fb34e0284 {"aliquot_tag": "ALQ_7680bfa1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.RNA-Seq.transcriptome.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.transcriptome.gdc_realn.bam 13517842281 BAM transcriptome harmonized CPTAC3 18b1a425-6da9-423a-8318-8511c1cc2bd6 76ccf3f6d8342db674803b4050da2593 {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.RNA-Seq.transcriptome.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.transcriptome.gdc_realn.bam 8846593670 BAM transcriptome harmonized CPTAC3 2894a9e5-9277-4685-8674-daa54a6acad1 03c85d7cab347a63e044ed73934aaedf {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor"} -C3N-02577.WGS.N C3N-02577 CCRCC WGS blood_normal CPT0183610002 CPT0183610002.WholeGenome.RP-1303.bam 136340418473 BAM aligned CPTAC3 b2b4a119-01ad-4e94-b82f-f5270f286611 84b6e50fbbc9b4eb6dbdcc527dab2bf6 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal"} -C3N-02577.WGS.N.hg38 C3N-02577 CCRCC WGS blood_normal CPT0183610002 bd2b4798-27a5-41ef-9acb-4dea43900385_wgs_gdc_realn.bam 196737925175 BAM harmonized CPTAC3 1b04ece1-4e1c-4959-abc7-06efb5d6e218 715f7bb244ea3da58fbc738e436810b0 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal"} -C3N-02577.WGS.T C3N-02577 CCRCC WGS tumor CPT0183550007 CPT0183550007.WholeGenome.RP-1303.bam 116295753995 BAM aligned CPTAC3 3490e0dd-bffb-4f37-879d-9277af0db3e5 edbd49223f5f34ee2f6b472475ed0f67 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor"} -C3N-02577.WGS.T.hg38 C3N-02577 CCRCC WGS tumor CPT0183550007 144b7fc3-4170-499b-9fc0-4fa930de9fcf_wgs_gdc_realn.bam 169957395212 BAM harmonized CPTAC3 67e8d9a9-63c8-4f7a-ade5-f836f1603b07 2707ebc33b0b485373ad1886002bf0e3 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor"} -C3N-02577.WXS.A C3N-02577 CCRCC WXS tissue_normal CPT0183570006 CPT0183570006.WholeExome.RP-1303.bam 20954884385 BAM aligned CPTAC3 c0a4cd74-1d11-449a-aa64-2f21fa02d877 4b0dbbe9e9baf34a8b844a5746991a54 {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.WXS.A.hg38 C3N-02577 CCRCC WXS tissue_normal CPT0183570006 7218ed28-7ce6-4e76-b950-0b0263a8dc9d_wxs_gdc_realn.bam 29144093631 BAM harmonized CPTAC3 cdf7e14c-5885-44a1-a893-764600f4df3d 0799b2d06d432a76f04d028994a0b71c {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02577.WXS.N C3N-02577 CCRCC WXS blood_normal CPT0183610002 CPT0183610002.WholeExome.RP-1303.bam 34730330802 BAM aligned CPTAC3 43a4c0cc-5fbd-46a3-a674-04e6b8d5e871 2045d1d991afdaf9b94f0a36bb86c759 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal"} -C3N-02577.WXS.N.hg38 C3N-02577 CCRCC WXS blood_normal CPT0183610002 bd2b4798-27a5-41ef-9acb-4dea43900385_wxs_gdc_realn.bam 47529560889 BAM harmonized CPTAC3 d8c891d9-72cc-457f-bfa0-42c91543e268 5fc8deadadea41561228968f811d8f74 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal"} -C3N-02577.WXS.T C3N-02577 CCRCC WXS tumor CPT0183550007 CPT0183550007.WholeExome.RP-1303.bam 29439242224 BAM aligned CPTAC3 c295b50e-2b2b-48d6-8619-73cfe1a83771 467ece57f6c61ed428e8874487ffccd8 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor"} -C3N-02577.WXS.T.hg38 C3N-02577 CCRCC WXS tumor CPT0183550007 144b7fc3-4170-499b-9fc0-4fa930de9fcf_wxs_gdc_realn.bam 40588972675 BAM harmonized CPTAC3 d7cc076a-05e2-415d-be2b-4741e3d56fb8 fd7caa53a37c54a5aaf43c6d6e25fa13 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor"} -C3N-02579.MethArray.Green.T C3N-02579 PDA Methylation_Array tumor CPT0207780010 203561450030_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 962f96f5-6518-4cf5-9be0-c9f6522c68e4 6a49b05d9a4bed4996d25b7a2d984881 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor"} -C3N-02579.MethArray.Red.T C3N-02579 PDA Methylation_Array tumor CPT0207780010 203561450030_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 9ad24678-13dc-4881-bbb5-bcf48d20ab98 b15c2240f826c311aae38f83c7c02507 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor"} -C3N-02579.miRNA-Seq.S5_L004_R1.T C3N-02579 PDA miRNA-Seq tumor CPT0207780007 190712_UNC32-K00270_0192_BH7HL3BBXY_CAACTA_S5_L004_R1_001.unaln.bam 232196825 BAM S5_L004_R1 unaligned CPTAC3 27c10aae-3492-414c-8950-4d47d0bd06ae 829529402204f6af78583c468b96e3d9 {"aliquot_tag": "ALQ_4087a71f", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02579.miRNA-Seq.T.hg38 C3N-02579 PDA miRNA-Seq tumor CPT0207780007 9473b7ab-a305-427e-a3eb-f2b0c420a94e_mirnaseq_gdc_realn.bam 262155140 BAM harmonized CPTAC3 d7fbe228-f9f7-4d4e-aecf-ad2eac91c0ed 2e23245a6f89a290656208d61633f879 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor"} -C3N-02579.RNA-Seq.chimeric.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.chimeric.gdc_realn.bam 42931647 BAM chimeric harmonized CPTAC3 9c9132fb-12b4-4abc-9446-99aecae628e2 c3d36ad7b43073fe5967612fc6137b76 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor"} -C3N-02579.RNA-Seq.genomic.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.genomic.gdc_realn.bam 11341588191 BAM genomic harmonized CPTAC3 6e767c9f-ed50-46cc-b8ab-8d3536218dc1 87f22f4049eb2c6730d6db85567db247 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor"} -C3N-02579.RNA-Seq.S6_L002_R1.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R1_001.fastq.gz 5587915144 FASTQ S6_L002_R1 unaligned CPTAC3 3d8af186-ccb3-433d-ad9f-ef605c2874e7 2ab99859e391c1850bbfe47022586d42 {"aliquot_tag": "ALQ_4087a71f", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02579.RNA-Seq.S6_L002_R2.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R2_001.fastq.gz 6122364074 FASTQ S6_L002_R2 unaligned CPTAC3 f4f1a9fc-0ab4-4cde-b748-4ec572df878f 92ed95a228218edf6e7b2523fbbbd171 {"aliquot_tag": "ALQ_4087a71f", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02579.RNA-Seq.transcriptome.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.transcriptome.gdc_realn.bam 17374155168 BAM transcriptome harmonized CPTAC3 fb35d596-ae31-4ce3-a850-b166887a03be 5da3cc38557ce874d62cabd30927dab0 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor"} -C3N-02579.WGS.N C3N-02579 PDA WGS blood_normal CPT0207830002 CPT0207830002.WholeGenome.RP-1303.bam 67247549025 BAM aligned CPTAC3 9ec064ef-83ba-4131-a3c3-c3b1d0710dd4 de72c606c1e330728cd09aa270225958 {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02579.WGS.N.hg38 C3N-02579 PDA WGS blood_normal CPT0207830002 c133d775-d52b-4007-966a-36dc5d716e60_wgs_gdc_realn.bam 97820884023 BAM harmonized CPTAC3 62451390-1083-4e93-a89f-1068fb1c7a98 f26c7d7054762d84bbf492e19a1ab734 {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02579.WGS.T C3N-02579 PDA WGS tumor CPT0207780010 CPT0207780010.WholeGenome.RP-1303.bam 117965823444 BAM aligned CPTAC3 32407ab8-620c-4581-b456-43ac9e6c80ac 01745da8b41ce7a900bc7291dfafc17b {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor"} -C3N-02579.WGS.T.hg38 C3N-02579 PDA WGS tumor CPT0207780010 1f95b327-af03-4af5-9888-ac6c688fd49f_wgs_gdc_realn.bam 174224108177 BAM harmonized CPTAC3 bed0b828-6710-476d-951d-7ef8749d00c4 3adaa63d763f567e9f5c528d423a7a37 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor"} -C3N-02579.WXS.N C3N-02579 PDA WXS blood_normal CPT0207830002 CPT0207830002.WholeExome.RP-1303.bam 24389775099 BAM aligned CPTAC3 9126d857-05ed-4dce-872a-4b468a757101 a7ee3b3107f7192feedaf2b629acdd83 {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02579.WXS.N.hg38 C3N-02579 PDA WXS blood_normal CPT0207830002 c133d775-d52b-4007-966a-36dc5d716e60_wxs_gdc_realn.bam 33441247639 BAM harmonized CPTAC3 bce24c2d-7b0f-4c3c-881c-c90f482baabb dbee29b159e9b0164f4a5204e492eb2e {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal"} -C3N-02579.WXS.T C3N-02579 PDA WXS tumor CPT0207780010 CPT0207780010.WholeExome.RP-1303.bam 43244383853 BAM aligned CPTAC3 765869fe-2015-4ef0-85c7-dc94545ab951 ab46f451220cfc02ada9c2f382b274ea {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor"} -C3N-02579.WXS.T.hg38 C3N-02579 PDA WXS tumor CPT0207780010 1f95b327-af03-4af5-9888-ac6c688fd49f_wxs_gdc_realn.bam 60950680073 BAM harmonized CPTAC3 4cf4ba48-7e6a-4c4d-9c7f-4881b9f1e0db b89173f77ecada351711fbcc93951c76 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor"} -C3N-02582.MethArray.Green.A C3N-02582 LUAD Methylation_Array tissue_normal CPT0147900009 203219650217_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e66223b9-5ebe-4bf7-9b58-5b38089ce840 05b20e0a81f26904e80639d05deaf362 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.MethArray.Green.T C3N-02582 LUAD Methylation_Array tumor CPT0147880010 203219650042_R01C01_Grn.idat 13676229 IDAT Green NA CPTAC3 ea7cd40b-1926-42d3-a161-4696a25454da 939d0cdcba36ae4bec0baf11dbc41c81 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor"} -C3N-02582.MethArray.Red.A C3N-02582 LUAD Methylation_Array tissue_normal CPT0147900009 203219650217_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1367a200-2b5b-4762-9083-5e4991f4d326 55196c5c4298c19ac5cda2dc3df87cff {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.MethArray.Red.T C3N-02582 LUAD Methylation_Array tumor CPT0147880010 203219650042_R01C01_Red.idat 13676229 IDAT Red NA CPTAC3 49d1a170-4678-4f25-910a-35ce11822127 848cbbf4b6cfc4e4f6ed8b4bfbe42dd7 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor"} -C3N-02582.miRNA-Seq.A.hg38 C3N-02582 LUAD miRNA-Seq tissue_normal CPT0147900006 714516e2-df96-4723-9d67-266d87af44eb_mirnaseq_gdc_realn.bam 271892406 BAM harmonized CPTAC3 ad7aa70d-c0f5-48e5-84ef-3ab299b8d5db c3902d39a4e9b9d8995bdd06992121a6 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.miRNA-Seq.S19_L003_R1.T C3N-02582 LUAD miRNA-Seq tumor CPT0147880007 181108_UNC31-K00269_0162_AH255GBBXY_TACAGC_S19_L003_R1_001.unaln.bam 217819232 BAM S19_L003_R1 unaligned CPTAC3 1a058486-26fa-4b1e-b8e5-4d07d17a0719 b7be6bb1e34bb69ffdb37cf358961841 {"aliquot_tag": "ALQ_c1627f5", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02582.miRNA-Seq.S2_L003_R1.A C3N-02582 LUAD miRNA-Seq tissue_normal CPT0147900006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L003_R1_001.unaln.bam 244752112 BAM S2_L003_R1 unaligned CPTAC3 461f9088-1c72-4ebe-ad94-b1e862233232 7321519c11e0bbb8a6adab9806b54f45 {"aliquot_tag": "ALQ_803d8f07", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.miRNA-Seq.T.hg38 C3N-02582 LUAD miRNA-Seq tumor CPT0147880007 f3cad331-0314-47f8-8b12-efd6ff1bf038_mirnaseq_gdc_realn.bam 236027438 BAM harmonized CPTAC3 a83d5769-4948-465a-9632-d4a49fd48cf3 70fd4819ffbaad86f10d625105f65517 {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor"} -C3N-02582.RNA-Seq.chimeric.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.chimeric.gdc_realn.bam 130329099 BAM chimeric harmonized CPTAC3 81b7f0bb-9748-4f5a-8382-bd3d4b9b13c3 8fbfea9dc785fe446c6cb09c8c2bd7c7 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.RNA-Seq.chimeric.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.chimeric.gdc_realn.bam 42638454 BAM chimeric harmonized CPTAC3 55c129cf-a71d-4e7a-9d7e-96ab8ae1fb94 1b6d060f7239508579f149c6456bb08f {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor"} -C3N-02582.RNA-Seq.genomic.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.genomic.gdc_realn.bam 8311114015 BAM genomic harmonized CPTAC3 b1a29ca4-cf76-4953-9ef1-aba109175aab 80f9109d83cf96931ba7a4752987b7a3 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.RNA-Seq.genomic.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.genomic.gdc_realn.bam 8595966239 BAM genomic harmonized CPTAC3 a7e9447c-e821-42e1-8e0a-e207a7fb3718 b52303e62655df747a0319b4e82c09d3 {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor"} -C3N-02582.RNA-Seq.S19_L005_R1.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 4034976977 FASTQ S19_L005_R1 unaligned CPTAC3 0cfc01dc-f4ef-4d6d-ae11-648bebc65525 558438408de3c51b678140207312619c {"aliquot_tag": "ALQ_c1627f5", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02582.RNA-Seq.S19_L005_R2.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 4311719705 FASTQ S19_L005_R2 unaligned CPTAC3 dac94c84-2d46-49ac-897e-9b77e6f83c33 6c3937e173d77a2a559e465c1226e6d1 {"aliquot_tag": "ALQ_c1627f5", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02582.RNA-Seq.S6_L002_R1.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R1_001.fastq.gz 3859968597 FASTQ S6_L002_R1 unaligned CPTAC3 542479cd-7439-4759-a586-3e0b172f5dbe 361592809227c93f2a17608e951326fb {"aliquot_tag": "ALQ_803d8f07", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.RNA-Seq.S6_L002_R2.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4208064449 FASTQ S6_L002_R2 unaligned CPTAC3 397192ae-3fb6-42b9-bcd3-f9c7d7296392 ae23c76504fcf432c996c4cce08f038a {"aliquot_tag": "ALQ_803d8f07", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.RNA-Seq.transcriptome.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.transcriptome.gdc_realn.bam 9235235325 BAM transcriptome harmonized CPTAC3 459d1fbc-14f4-4a53-ab11-30fc7efbec0c 02bd99a13239751bd85bb0fd61cb58f7 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.RNA-Seq.transcriptome.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.transcriptome.gdc_realn.bam 10627630385 BAM transcriptome harmonized CPTAC3 64902423-48a7-4c8a-bdcb-56323abd2b6d fd9ace38369497db8b7c12ad9b3fe0f9 {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor"} -C3N-02582.WGS.A C3N-02582 LUAD WGS tissue_normal CPT0147900009 CPT0147900009.WholeGenome.RP-1303.bam 63262648540 BAM aligned CPTAC3 2f5d1181-9c3d-4502-ad3d-fc22aacabbe8 2386c73944ddbed54dd73de3b8c8a098 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.WGS.A.hg38 C3N-02582 LUAD WGS tissue_normal CPT0147900009 cf4fb393-83a1-4b9b-9099-4eae34b29129_wgs_gdc_realn.bam 92795314503 BAM harmonized CPTAC3 d88dc5e4-538f-4a49-ab3f-feb47151e14c 1e5e9c107445def4d180344c017cc614 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.WGS.N C3N-02582 LUAD WGS blood_normal CPT0147910002 CPT0147910002.WholeGenome.RP-1303.bam 55117655205 BAM aligned CPTAC3 9d2009af-daf7-4996-b1b9-d95042a49ad3 ee9b7fe3b5fa1f3f500b42b6725d9a5a {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-02582.WGS.N.hg38 C3N-02582 LUAD WGS blood_normal CPT0147910002 f2ace677-28ab-4e3b-a334-6eea54e87495_wgs_gdc_realn.bam 80421167018 BAM harmonized CPTAC3 d09b9ffc-f873-402a-aeea-4775dd37e88b 29b7ef8c9c656dd5b4d802540245b0d3 {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-02582.WGS.T C3N-02582 LUAD WGS tumor CPT0147880010 CPT0147880010.WholeGenome.RP-1303.bam 57150872108 BAM aligned CPTAC3 94062bc3-64cc-483c-80a4-e03d9775b2d5 b44ae5f4cd864b7927528c5ec0584bce {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor"} -C3N-02582.WGS.T.hg38 C3N-02582 LUAD WGS tumor CPT0147880010 5c8086ed-b146-44ad-9c30-0efc4c54d072_wgs_gdc_realn.bam 83505374642 BAM harmonized CPTAC3 cea8abc5-6e7d-4095-bd01-33d0f19cbe7e b3da9336ad1b441ed2cd987cdd683ddf {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor"} -C3N-02582.WXS.A C3N-02582 LUAD WXS tissue_normal CPT0147900009 CPT0147900009.WholeExome.RP-1303.bam 33083084458 BAM aligned CPTAC3 d088a230-dc11-4477-9b2e-93ef084aaae5 bebec412f99e22998e1e446e677006f6 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.WXS.A.hg38 C3N-02582 LUAD WXS tissue_normal CPT0147900009 cf4fb393-83a1-4b9b-9099-4eae34b29129_wxs_gdc_realn.bam 44188493237 BAM harmonized CPTAC3 f545a554-cbe9-4b50-86eb-7722feff2f00 bce57db36ff6abfa4f6180d437350818 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02582.WXS.N C3N-02582 LUAD WXS blood_normal CPT0147910002 CPT0147910002.WholeExome.RP-1303.bam 35209169022 BAM aligned CPTAC3 2de69632-3179-43a3-89ef-bfc17b6bc5a0 821a6f04f2eb67f1e71a848ade686a92 {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-02582.WXS.N.hg38 C3N-02582 LUAD WXS blood_normal CPT0147910002 f2ace677-28ab-4e3b-a334-6eea54e87495_wxs_gdc_realn.bam 47159565884 BAM harmonized CPTAC3 f0493524-34fb-42de-812b-5ac5f2ae6434 6f706e313f4bf6a84587f1d9fc673de7 {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-02582.WXS.T C3N-02582 LUAD WXS tumor CPT0147880010 CPT0147880010.WholeExome.RP-1303.bam 21927222732 BAM aligned CPTAC3 eb774fd8-e7ba-47d3-b8a5-b6962e4d1703 89d85f4e0e4f6e7c50a8d91fa3d94a30 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor"} -C3N-02582.WXS.T.hg38 C3N-02582 LUAD WXS tumor CPT0147880010 5c8086ed-b146-44ad-9c30-0efc4c54d072_wxs_gdc_realn.bam 29689423570 BAM harmonized CPTAC3 2261293a-0b88-4a0d-bf24-2cf01a99bec1 0a40a00d4ec18f9ee70c141b303b6939 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor"} -C3N-02585.MethArray.Green.A C3N-02585 PDA Methylation_Array tissue_normal CPT0183770007 203561450068_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 dabcea82-6670-48ba-bdb3-dacfddd7e86a cb6bfd4c1bd777fab8abdc6067b94a9b {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02585.MethArray.Green.T C3N-02585 PDA Methylation_Array tumor CPT0183750008 203561620052_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 54417b42-79da-44d5-b67a-f50cbf53d474 18e040273fd3e4134397f5fa72b550a9 {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor"} -C3N-02585.MethArray.Red.A C3N-02585 PDA Methylation_Array tissue_normal CPT0183770007 203561450068_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 99881f46-bcd9-4acb-aeff-36c1f70c88ce c0a7c759098d13e3c666cc105823a979 {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02585.MethArray.Red.T C3N-02585 PDA Methylation_Array tumor CPT0183750008 203561620052_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 631bd16f-d235-4fb9-b013-4b9b3e6e507a de1c49e34f82996fd218afa100fb219d {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor"} -C3N-02585.miRNA-Seq.S19_L006_R1.T C3N-02585 PDA miRNA-Seq tumor CPT0183750011 190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L006_R1_001.unaln.bam 229896015 BAM S19_L006_R1 unaligned CPTAC3 26cea4a4-0920-426c-a199-88970ad1f60b 071b185dc6d70a82edf4aefcff6312f9 {"aliquot_tag": "ALQ_5648f4b9", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02585.miRNA-Seq.T.hg38 C3N-02585 PDA miRNA-Seq tumor CPT0183750011 29419d59-fd49-4dd7-b953-1f8880cae940_mirnaseq_gdc_realn.bam 260606156 BAM harmonized CPTAC3 5e829303-fb20-4579-84f5-c653fba64a6d acd40dd6379a0d481f808112fb29679a {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor"} -C3N-02585.RNA-Seq.chimeric.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.chimeric.gdc_realn.bam 42132253 BAM chimeric harmonized CPTAC3 775d6dc2-4258-45b2-92de-afd1206ddb90 f769e78b8df8b8e7c75b71e3b5ee6bcd {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor"} -C3N-02585.RNA-Seq.genomic.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.genomic.gdc_realn.bam 10040837642 BAM genomic harmonized CPTAC3 47eb9368-0cba-4b15-9624-f03d957034cb cc019ea1ce17aaea3dc2ef1bfa41f99a {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor"} -C3N-02585.RNA-Seq.S12_L003_R1.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R1_001.fastq.gz 4088387883 FASTQ S12_L003_R1 unaligned CPTAC3 914352fc-ea66-48e9-b538-2dab218aa1d5 fe2e0d563127b17684ef5e2b41f886fc {"aliquot_tag": "ALQ_5648f4b9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02585.RNA-Seq.S12_L003_R2.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R2_001.fastq.gz 4445362518 FASTQ S12_L003_R2 unaligned CPTAC3 e048a588-9c8d-452e-9a53-5cdc3629715e b912534d99305ecbe9fb27d493ac3bed {"aliquot_tag": "ALQ_5648f4b9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02585.RNA-Seq.transcriptome.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.transcriptome.gdc_realn.bam 10668839475 BAM transcriptome harmonized CPTAC3 134e7865-4c79-4eb7-870d-8008b3d2e34c 8bdaf1c294300125e6d6e1d854c571cb {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor"} -C3N-02585.WGS.N C3N-02585 PDA WGS blood_normal CPT0183810002 CPT0183810002.WholeGenome.RP-1303.bam 77667876827 BAM aligned CPTAC3 129b49e0-afab-47d6-994c-dd74db4242a1 72da157de37adc3ede58513a85d67c24 {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal"} -C3N-02585.WGS.N.hg38 C3N-02585 PDA WGS blood_normal CPT0183810002 2d6b05e6-7e99-4cfa-925f-2b617bb26f2b_wgs_gdc_realn.bam 114473097001 BAM harmonized CPTAC3 432c4b20-e467-48f5-bbc2-352c7f2c0f37 1afb499559a3d0ce5c4eac564ada9fb2 {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal"} -C3N-02585.WGS.T C3N-02585 PDA WGS tumor CPT0183750008 CPT0183750008.WholeGenome.RP-1303.bam 143170713821 BAM aligned CPTAC3 b84ff467-42d1-4cd4-ab7e-1429c48e1668 6dbba9816f48f119c326c2d6966baead {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor"} -C3N-02585.WGS.T.hg38 C3N-02585 PDA WGS tumor CPT0183750008 9f82cf73-0d4d-49e2-a89a-6f482fa01773_wgs_gdc_realn.bam 206565544511 BAM harmonized CPTAC3 edbc3608-6fe4-4142-b029-8961d8df1533 19a566cd684deb7a7a6eabe5c31c80af {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor"} -C3N-02585.WXS.A C3N-02585 PDA WXS tissue_normal CPT0183770007 CPT0183770007.WholeExome.RP-1303.bam 25910104103 BAM aligned CPTAC3 7a17e192-0dba-4298-8177-0af192edda80 332287719f81931c3c6f88cf9fcf449b {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02585.WXS.A.hg38 C3N-02585 PDA WXS tissue_normal CPT0183770007 1413d7f0-8996-4466-adf8-2e68cfb7e864_wxs_gdc_realn.bam 35157107961 BAM harmonized CPTAC3 a074d11a-6d1f-4d72-a5ab-8969066ae136 09eaf1a93f1e0fdebc6dd6cd7e6eb68e {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02585.WXS.N C3N-02585 PDA WXS blood_normal CPT0183810002 CPT0183810002.WholeExome.RP-1303.bam 34878684634 BAM aligned CPTAC3 abf118d8-79fd-49db-8d28-97f1ac4c834e 3b110ab461bc4d1e6fc402bba91007d5 {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal"} -C3N-02585.WXS.N.hg38 C3N-02585 PDA WXS blood_normal CPT0183810002 2d6b05e6-7e99-4cfa-925f-2b617bb26f2b_wxs_gdc_realn.bam 47399084033 BAM harmonized CPTAC3 c15928cb-6798-40c7-8834-538d4a0bce7d cc72dbaf3971b66da9b5fd3f485f992f {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal"} -C3N-02585.WXS.T C3N-02585 PDA WXS tumor CPT0183750008 CPT0183750008.WholeExome.RP-1303.bam 51837458008 BAM aligned CPTAC3 72d952d1-c3c4-4bd4-97a8-57f3bcb69508 fc586b787133b3c43d5fd20c693218e3 {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor"} -C3N-02585.WXS.T.hg38 C3N-02585 PDA WXS tumor CPT0183750008 9f82cf73-0d4d-49e2-a89a-6f482fa01773_wxs_gdc_realn.bam 70915107981 BAM harmonized CPTAC3 2ab76a3d-b9b9-4914-8b78-ac08af372bdb 5d2e47b4b973c4f07381ae5b6ae3dee1 {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor"} -C3N-02586.MethArray.Green.A C3N-02586 LUAD Methylation_Array tissue_normal CPT0148000009 203219640095_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 656b474c-d5e5-44c4-95bc-123fc1f9c0df 71a73dc200f5ad7f70bc3da6e7f0eaa1 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.MethArray.Green.T C3N-02586 LUAD Methylation_Array tumor CPT0147980010 203028200093_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1bf5a013-2dfc-4c5a-ae02-a6d492815265 73f2d5951bb2beac1259a83f789315fa {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.MethArray.Red.A C3N-02586 LUAD Methylation_Array tissue_normal CPT0148000009 203219640095_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 de9d2e0e-b266-4c74-9ac1-0a305d9d25c0 456bb457ef407d90eb208e9be3cf813f {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.MethArray.Red.T C3N-02586 LUAD Methylation_Array tumor CPT0147980010 203028200093_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 f384b694-b43b-4f72-9fc7-7467768f8f06 9dd4200927baea0cc98dc183b81ec206 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.miRNA-Seq.A.hg38 C3N-02586 LUAD miRNA-Seq tissue_normal CPT0148000006 609c04ef-7b65-41d3-8d7e-3bda7becd458_mirnaseq_gdc_realn.bam 233271580 BAM harmonized CPTAC3 8fe1f7f0-333e-4049-828c-def2124d3580 00396ed76e521771d33bcac58339f587 {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.miRNA-Seq.S20_L003_R1.T C3N-02586 LUAD miRNA-Seq tumor CPT0147980007 181108_UNC31-K00269_0162_AH255GBBXY_TATAAT_S20_L003_R1_001.unaln.bam 247969941 BAM S20_L003_R1 unaligned CPTAC3 4e19f612-c7e8-468a-aa44-f365869ae762 0aebbf3cf53400afae62e23c7c5e1811 {"aliquot_tag": "ALQ_c74af450", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02586.miRNA-Seq.S3_L003_R1.A C3N-02586 LUAD miRNA-Seq tissue_normal CPT0148000006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L003_R1_001.unaln.bam 207542222 BAM S3_L003_R1 unaligned CPTAC3 1075e369-1235-49ab-9eb3-48ca9b4fd566 8ff1521a109c8858b3ffdd56dac7132a {"aliquot_tag": "ALQ_517aae26", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.miRNA-Seq.T.hg38 C3N-02586 LUAD miRNA-Seq tumor CPT0147980007 e0b26f28-1e3d-427c-94aa-8e63c611bea1_mirnaseq_gdc_realn.bam 269092527 BAM harmonized CPTAC3 0bcf0b4e-2980-443e-9ccf-09b319497a6a dc1308690bd3b8f5daa3c5e9b88c6c7a {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor"} -C3N-02586.RNA-Seq.chimeric.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.chimeric.gdc_realn.bam 176757432 BAM chimeric harmonized CPTAC3 ab2edff9-0def-48cd-8b94-196796cb8ccd 19a268360138b2aafbf0a2886841139e {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.RNA-Seq.chimeric.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.chimeric.gdc_realn.bam 35660422 BAM chimeric harmonized CPTAC3 d312252a-46cb-4e7b-a837-f61fafdaab06 dbc8fc4e9a524a8c39135742501b8540 {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor"} -C3N-02586.RNA-Seq.genomic.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.genomic.gdc_realn.bam 10306998518 BAM genomic harmonized CPTAC3 44c94cd3-5b17-40ba-96a2-92d966d1a321 fc1cd7ae46c989e708ac04e80f37777e {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.RNA-Seq.genomic.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.genomic.gdc_realn.bam 8787308285 BAM genomic harmonized CPTAC3 97110172-35bf-4b2b-8f64-887be3bec696 2b7bc85b054efd77aea692bfb3998be5 {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor"} -C3N-02586.RNA-Seq.S22_L006_R1.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R1_001.fastq.gz 3926303770 FASTQ S22_L006_R1 unaligned CPTAC3 694ee77f-462d-4e97-8391-eedf2593791b 66fa5faad7e7795d6fe48faac0dc152b {"aliquot_tag": "ALQ_c74af450", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02586.RNA-Seq.S22_L006_R2.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R2_001.fastq.gz 4212407561 FASTQ S22_L006_R2 unaligned CPTAC3 cd8b39a5-1ef2-4304-ad2a-bc398a537daf 335a40cd8c0ab8f4cbf9d2ae32900509 {"aliquot_tag": "ALQ_c74af450", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.RNA-Seq.S2_L001_R1.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3920057396 FASTQ S2_L001_R1 unaligned CPTAC3 86c667ea-54da-4e8e-9f28-ffda103d0938 0e1a6c1000a0e97b842b82825b7aa027 {"aliquot_tag": "ALQ_517aae26", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.RNA-Seq.S2_L001_R2.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4292573803 FASTQ S2_L001_R2 unaligned CPTAC3 d54a8a19-632b-46c6-8d98-35a1634e8c03 b7ede63715625618e6fe1997d360f559 {"aliquot_tag": "ALQ_517aae26", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.RNA-Seq.transcriptome.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.transcriptome.gdc_realn.bam 9197470229 BAM transcriptome harmonized CPTAC3 6d399c70-7985-4f4b-9f43-5751c3984cbe 93176a13abab115218827f008004db4e {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.RNA-Seq.transcriptome.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.transcriptome.gdc_realn.bam 10193310393 BAM transcriptome harmonized CPTAC3 4a407c19-a899-4d3b-9f41-f9028b3e0dde 2201da3f5ff4384da37049678ed90a8f {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor"} -C3N-02586.Targeted.T C3N-02586 LUAD Targeted_Sequencing tumor CPT0147980010 CPT0147980010.CustomSelection.RP-1303.PDO-18786.bam 4733831323 BAM aligned CPTAC3 b333a01f-8a99-4386-91e6-11c5d4c955ae 70df66c89d3fb1b27ba1bbd74ffa812d {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.Targeted.T.hg38 C3N-02586 LUAD Targeted_Sequencing tumor CPT0147980010 73ee6f62-37dc-43b0-8ff4-0a8c1c1a2f17_targetedsequencing_gdc_realn.bam 6627829300 BAM harmonized CPTAC3 d1be3119-3531-45b0-b914-baf7d58d9ad2 3dfac3f4d1d6812d839df5751a5015e7 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.WGS.A C3N-02586 LUAD WGS tissue_normal CPT0148000009 CPT0148000009.WholeGenome.RP-1303.bam 61824794648 BAM aligned CPTAC3 94c244c2-29ca-46b2-a783-c463118441e4 710513fc4698611553abe87ed93ac605 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.WGS.A.hg38 C3N-02586 LUAD WGS tissue_normal CPT0148000009 e7e39aef-a6af-4333-9fa1-06682a5b5bce_wgs_gdc_realn.bam 89085938465 BAM harmonized CPTAC3 ac94d3bb-d292-41c9-9eb4-025c3e81b080 e20bcee66cd821d67c553551777d61c9 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.WGS.N C3N-02586 LUAD WGS blood_normal CPT0148010002 CPT0148010002.WholeGenome.RP-1303.bam 56303575704 BAM aligned CPTAC3 176175c8-1460-42f7-9fac-5da2340d4664 ef1899cea2a7184f7a7ae311e7e6b10e {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02586.WGS.N.hg38 C3N-02586 LUAD WGS blood_normal CPT0148010002 84458a40-db8a-4990-b3c0-3a22f842e9b3_wgs_gdc_realn.bam 82744521359 BAM harmonized CPTAC3 14f36c4d-08fc-4db8-9b78-63ec2462aa60 36133813bd2fe8b6047dff7fc77b8270 {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02586.WGS.T C3N-02586 LUAD WGS tumor CPT0147980010 CPT0147980010.WholeGenome.RP-1303.bam 61945949040 BAM aligned CPTAC3 88d96c1d-27b8-4491-94c5-c956bfa14216 4bcdbad8c4d64d6dae89e372f21cdf47 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.WGS.T.hg38 C3N-02586 LUAD WGS tumor CPT0147980010 73ee6f62-37dc-43b0-8ff4-0a8c1c1a2f17_wgs_gdc_realn.bam 94410861755 BAM harmonized CPTAC3 a5b21519-8166-4726-8b51-ced6507a88cb 296857e7657e9767332295d51a0dffb0 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.WXS.A C3N-02586 LUAD WXS tissue_normal CPT0148000009 CPT0148000009.WholeExome.RP-1303.bam 23821606843 BAM aligned CPTAC3 f1cbae06-71fb-430f-849f-bf4d59e8c3bd eff2741fcbdd88b42d1fe39d0b3d0897 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.WXS.A.hg38 C3N-02586 LUAD WXS tissue_normal CPT0148000009 e7e39aef-a6af-4333-9fa1-06682a5b5bce_wxs_gdc_realn.bam 31667387232 BAM harmonized CPTAC3 13b3d0cc-73c3-40bc-8e06-2ef35e3965dc 5c9bb4837b7d8362e66e4a66c49b085b {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02586.WXS.N C3N-02586 LUAD WXS blood_normal CPT0148010002 CPT0148010002.WholeExome.RP-1303.bam 48408947801 BAM aligned CPTAC3 f21f0d46-6298-4468-9664-7ce3f5231e33 7ffac1ee0d16b6005743bd4f599021ef {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02586.WXS.N.hg38 C3N-02586 LUAD WXS blood_normal CPT0148010002 84458a40-db8a-4990-b3c0-3a22f842e9b3_wxs_gdc_realn.bam 64603223832 BAM harmonized CPTAC3 e065c736-b5ab-4af6-8e6e-15f0a2622475 81ac7a4451cf30dda89f1b9b4e647eff {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02586.WXS.T C3N-02586 LUAD WXS tumor CPT0147980010 CPT0147980010.WholeExome.RP-1303.bam 25823791478 BAM aligned CPTAC3 90a3ed72-21be-4014-b827-a674e8f16834 ddd51b1fa5112172cd316fe8958c248b {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02586.WXS.T.hg38 C3N-02586 LUAD WXS tumor CPT0147980010 73ee6f62-37dc-43b0-8ff4-0a8c1c1a2f17_wxs_gdc_realn.bam 35368510426 BAM harmonized CPTAC3 37832802-e1f4-43f7-bc46-67bcc4233f2b 51257a64d7ff9f41cc71a162e3f06f1c {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor"} -C3N-02587.MethArray.Green.A C3N-02587 LUAD Methylation_Array tissue_normal CPT0148100009 203219650164_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 6a917187-7c30-4a5c-b90f-68fee216e71c 83465f95802505b8730ce419b29fb410 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.MethArray.Green.T C3N-02587 LUAD Methylation_Array tumor CPT0148080010 203219670117_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 356f2253-52d5-4a36-8755-7b5cc2e5eaac dd6712316545f2ce0da4199930cf0fa5 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02587.MethArray.Red.A C3N-02587 LUAD Methylation_Array tissue_normal CPT0148100009 203219650164_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 56709476-cd7d-4639-87b9-76245775071f 1d36b2aaeb2a9de9b0f1e28862c82729 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.MethArray.Red.T C3N-02587 LUAD Methylation_Array tumor CPT0148080010 203219670117_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 3d452683-de78-453c-b385-fc8496d640ba 2520bb6d343c3d2ec5dfdfa8d572b560 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02587.miRNA-Seq.A.hg38 C3N-02587 LUAD miRNA-Seq tissue_normal CPT0148100006 9c59e5a3-36f5-4931-a5fd-93b2a3788533_mirnaseq_gdc_realn.bam 273068090 BAM harmonized CPTAC3 4f01f6e4-4c5c-4fc8-8e40-9262fb2b852f ba8ed3292ae04466f875a6a1bdae77ad {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.miRNA-Seq.S21_L003_R1.T C3N-02587 LUAD miRNA-Seq tumor CPT0148080007 181108_UNC31-K00269_0162_AH255GBBXY_TCATTC_S21_L003_R1_001.unaln.bam 218233853 BAM S21_L003_R1 unaligned CPTAC3 113d7c51-2d3c-49ea-8ed5-72f0427080c6 2e86bc54ebdce42c027eb605b7b66de9 {"aliquot_tag": "ALQ_160dd571", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02587.miRNA-Seq.S4_L003_R1.A C3N-02587 LUAD miRNA-Seq tissue_normal CPT0148100006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L003_R1_001.unaln.bam 245632645 BAM S4_L003_R1 unaligned CPTAC3 ac11a7a4-a332-425f-adaa-3ef9c04a3af8 c79cef9cc6636f460404b33f39083f48 {"aliquot_tag": "ALQ_9a267d83", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.miRNA-Seq.T.hg38 C3N-02587 LUAD miRNA-Seq tumor CPT0148080007 658dcb94-e542-4ea6-bbd4-7205d980ec4b_mirnaseq_gdc_realn.bam 240605441 BAM harmonized CPTAC3 54603d13-bc13-44be-b921-92b554061215 314f9fc080eb9c32e0df65691f4c5474 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor"} -C3N-02587.RNA-Seq.chimeric.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.chimeric.gdc_realn.bam 107885146 BAM chimeric harmonized CPTAC3 b345786d-aea1-4bdf-a44c-b9a913962691 14f24d52874280e8bd035e1a1547dd4e {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.RNA-Seq.chimeric.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.chimeric.gdc_realn.bam 30839333 BAM chimeric harmonized CPTAC3 5c5978dd-9d69-42b6-be26-5fa00152f130 8b0f3dc824680e92b5eb4c5c0af79fd1 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor"} -C3N-02587.RNA-Seq.genomic.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.genomic.gdc_realn.bam 9226362658 BAM genomic harmonized CPTAC3 16801bba-dedd-4181-b71a-54f01999321b 54bb53ef92daa1f5f810b6dfb8d2480a {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.RNA-Seq.genomic.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.genomic.gdc_realn.bam 8723142673 BAM genomic harmonized CPTAC3 c2c61cd8-e2f3-489e-9971-c42a9fa59ad3 98f3c625b31b45c58102ba4712b35798 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor"} -C3N-02587.RNA-Seq.S21_L006_R1.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R1_001.fastq.gz 3836963306 FASTQ S21_L006_R1 unaligned CPTAC3 97b059c7-dd4a-4115-9781-ade8fb892063 d249dd1d0e69f24144703d0d542c7efc {"aliquot_tag": "ALQ_160dd571", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02587.RNA-Seq.S21_L006_R2.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R2_001.fastq.gz 4148435363 FASTQ S21_L006_R2 unaligned CPTAC3 d94ec4df-9457-4d44-a101-a66fd2ec0e24 af9b7a7448208ce86d01e1fb56aad2ef {"aliquot_tag": "ALQ_160dd571", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02587.RNA-Seq.S8_L002_R1.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R1_001.fastq.gz 4456773186 FASTQ S8_L002_R1 unaligned CPTAC3 1db09be6-8c61-4200-bb2d-045c3e4ed414 e4a152dc5c3ff0ed73cb155c02b265cf {"aliquot_tag": "ALQ_9a267d83", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.RNA-Seq.S8_L002_R2.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4754113558 FASTQ S8_L002_R2 unaligned CPTAC3 d4744049-4d5c-4345-8438-7d75f664df0e d02460e731bc09072102fc784acbb47e {"aliquot_tag": "ALQ_9a267d83", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.RNA-Seq.transcriptome.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.transcriptome.gdc_realn.bam 10615441820 BAM transcriptome harmonized CPTAC3 c335d989-b7aa-47ac-b837-11efc3072e59 9fe52c3dd9839ade97f2a34a473007b8 {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.RNA-Seq.transcriptome.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.transcriptome.gdc_realn.bam 11665338642 BAM transcriptome harmonized CPTAC3 4d2c20c2-80d7-41dd-899e-f454093146b7 d44d1e81b175fac654d4ed72c5253e61 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor"} -C3N-02587.Targeted.T C3N-02587 LUAD Targeted_Sequencing tumor CPT0148080010 CPT0148080010.CustomSelection.RP-1303.PDO-18786.bam 5083127666 BAM aligned CPTAC3 e52d6091-8366-469e-9f8b-e7253b46499e dccf1ce91c96f1498a2808f47ed1308a {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02587.Targeted.T.hg38 C3N-02587 LUAD Targeted_Sequencing tumor CPT0148080010 d6125e9e-214c-48d0-a98d-3c10a87ff09e_targetedsequencing_gdc_realn.bam 6975193127 BAM harmonized CPTAC3 6c8b8c79-303b-406f-88a0-48c94301b953 7de5ed28b37d4dc5fe785a161dc61173 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02587.WGS.A C3N-02587 LUAD WGS tissue_normal CPT0148100009 CPT0148100009.WholeGenome.RP-1303.bam 58194106906 BAM aligned CPTAC3 15afa751-7833-465e-b653-f405e21b86b2 09419f2f12091211ba6b91d5891370de {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.WGS.A.hg38 C3N-02587 LUAD WGS tissue_normal CPT0148100009 b33f6da6-8365-4800-bf4e-a13314058485_wgs_gdc_realn.bam 85970313225 BAM harmonized CPTAC3 8fc3d397-7fec-4586-887b-a35f356f7e2d b6299595918d1cd03b687691d746a5f6 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.WGS.N C3N-02587 LUAD WGS blood_normal CPT0148110002 CPT0148110002.WholeGenome.RP-1303.bam 58034064880 BAM aligned CPTAC3 714d7037-b6e0-4ab2-acb5-a7aa7d43bab6 888948a220cbeed7366c465cde354b1f {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02587.WGS.N.hg38 C3N-02587 LUAD WGS blood_normal CPT0148110002 ba9013c4-8616-44e1-9ed7-7cfbc4a74e1f_wgs_gdc_realn.bam 84123488813 BAM harmonized CPTAC3 bfdfc3e7-d5d5-4c1c-b626-d5b6c9b5baa2 b822cd19da0f21f3f10c783829b7a415 {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02587.WGS.T C3N-02587 LUAD WGS tumor CPT0148080010 CPT0148080010.WholeGenome.RP-1303.bam 58042763193 BAM aligned CPTAC3 6a044f9d-24d6-49eb-bb83-f4f6e2e550c8 c6c27fb3aadda4cf361b0a120fa910ca {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02587.WGS.T.hg38 C3N-02587 LUAD WGS tumor CPT0148080010 d6125e9e-214c-48d0-a98d-3c10a87ff09e_wgs_gdc_realn.bam 85119273118 BAM harmonized CPTAC3 c0e3bb09-2d9f-48c0-9217-e05a91db72fd 0ac1c6252442a063bfd31b5b96d0af72 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02587.WXS.A C3N-02587 LUAD WXS tissue_normal CPT0148100009 CPT0148100009.WholeExome.RP-1303.bam 21209140944 BAM aligned CPTAC3 5b35cde6-d868-490e-a97e-e9691d5a0d11 691c9c5674ff2f99ac7fd3d31cf48c05 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.WXS.A.hg38 C3N-02587 LUAD WXS tissue_normal CPT0148100009 b33f6da6-8365-4800-bf4e-a13314058485_wxs_gdc_realn.bam 28667550265 BAM harmonized CPTAC3 5cbc8539-406e-4951-b913-5c6fef73d75a d9881b55dbcdc423ace20acf70dfc778 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02587.WXS.N C3N-02587 LUAD WXS blood_normal CPT0148110002 CPT0148110002.WholeExome.RP-1303.bam 46402912649 BAM aligned CPTAC3 962d6b42-0d73-4864-82a2-e66d2b2da918 643672d653c27b87633e4034b65f5575 {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02587.WXS.N.hg38 C3N-02587 LUAD WXS blood_normal CPT0148110002 ba9013c4-8616-44e1-9ed7-7cfbc4a74e1f_wxs_gdc_realn.bam 62240721774 BAM harmonized CPTAC3 6dbf4461-1e68-4b6c-8dd0-7a96da5d7214 2ea3cef9d12dc5141544c17e3c88ba52 {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02587.WXS.T C3N-02587 LUAD WXS tumor CPT0148080010 CPT0148080010.WholeExome.RP-1303.bam 29588565411 BAM aligned CPTAC3 614835d9-42d1-4f94-aea0-9e17939425e8 80efcc87681dffa2a8228e852857abb3 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02587.WXS.T.hg38 C3N-02587 LUAD WXS tumor CPT0148080010 d6125e9e-214c-48d0-a98d-3c10a87ff09e_wxs_gdc_realn.bam 39479864742 BAM harmonized CPTAC3 0e7f0ebf-378c-4dae-8e11-ed229e13dddb 49e0db74ce9e30564275e4f3b7989429 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor"} -C3N-02588.MethArray.Green.A C3N-02588 LUAD Methylation_Array tissue_normal CPT0148200009 203219640160_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 dc16dc00-641f-4d9a-8975-cbccc087a668 214d20d8041fb6838275cf3321cc4f82 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.MethArray.Green.T C3N-02588 LUAD Methylation_Array tumor CPT0148180010 203027390049_R06C01_Grn.idat 13676229 IDAT Green NA CPTAC3 552501c7-68f2-4703-8aff-1ab174889a45 d0a868b560413de6e40ab2e545493d10 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02588.MethArray.Red.A C3N-02588 LUAD Methylation_Array tissue_normal CPT0148200009 203219640160_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 bcf30911-dbc3-4c80-89ff-273be6f5f111 c1431eb9dbfdd6181b5a2cc18db3d708 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.MethArray.Red.T C3N-02588 LUAD Methylation_Array tumor CPT0148180010 203027390049_R06C01_Red.idat 13676229 IDAT Red NA CPTAC3 3b02f4d4-2977-4c7e-a5f8-88d46117c9cf d2b427acbd8f4aed2932647aae7643d3 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02588.miRNA-Seq.A.hg38 C3N-02588 LUAD miRNA-Seq tissue_normal CPT0148200006 f70bbbd3-e229-43d0-8497-446a9a7573be_mirnaseq_gdc_realn.bam 262346339 BAM harmonized CPTAC3 eb84ee46-4fab-481d-b636-874c17b4e177 e505d8f23afd05bb4f1938263d4b89a2 {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.miRNA-Seq.S22_L003_R1.T C3N-02588 LUAD miRNA-Seq tumor CPT0148180007 181108_UNC31-K00269_0162_AH255GBBXY_TCCCGA_S22_L003_R1_001.unaln.bam 210613129 BAM S22_L003_R1 unaligned CPTAC3 531be2a5-0bbd-49c4-af4d-2aefa560d62a 24798a21d5a0981ff23b9b60d04ef0ef {"aliquot_tag": "ALQ_dd5106d4", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02588.miRNA-Seq.S5_L003_R1.A C3N-02588 LUAD miRNA-Seq tissue_normal CPT0148200006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L003_R1_001.unaln.bam 233772364 BAM S5_L003_R1 unaligned CPTAC3 67c0b889-ff2a-4f3d-a9b3-46ff364cab52 faad696c12b25aeaf80aa2194b1214ea {"aliquot_tag": "ALQ_1cb20f2d", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.miRNA-Seq.T.hg38 C3N-02588 LUAD miRNA-Seq tumor CPT0148180007 1024214a-4878-466a-b964-7228ab11ee77_mirnaseq_gdc_realn.bam 229859635 BAM harmonized CPTAC3 d9d2dee8-f90c-4f7a-b120-3ad2da74b1aa 06bc9650fb31ea4907f3b3550dba10c7 {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor"} -C3N-02588.RNA-Seq.chimeric.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.chimeric.gdc_realn.bam 163488880 BAM chimeric harmonized CPTAC3 f85d6c35-879d-4f31-8296-7c356130c993 9a49a19e7c86cea08c34c5f5d86577b7 {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.RNA-Seq.chimeric.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.chimeric.gdc_realn.bam 40883264 BAM chimeric harmonized CPTAC3 91557d4f-2dbd-482d-b7ee-326a552cd707 c33e0b15d6ea571e4c99115ca162c8a0 {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor"} -C3N-02588.RNA-Seq.genomic.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.genomic.gdc_realn.bam 7749368022 BAM genomic harmonized CPTAC3 9c35b891-4d83-45a8-9039-db0884a5c4eb 05ee58ed7292c354d2e21871c2f981df {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.RNA-Seq.genomic.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.genomic.gdc_realn.bam 9767832730 BAM genomic harmonized CPTAC3 65ff20f6-804d-41d2-ba39-7664feb0ba39 20ef6818ec13a0c55fca6015ad6abc79 {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor"} -C3N-02588.RNA-Seq.S24_L006_R1.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R1_001.fastq.gz 4528492951 FASTQ S24_L006_R1 unaligned CPTAC3 b6b18c65-7d64-413e-8384-ab62d44284eb 4d1e1adf20ce804e1e9b1fb442da7397 {"aliquot_tag": "ALQ_dd5106d4", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02588.RNA-Seq.S24_L006_R2.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R2_001.fastq.gz 4794829253 FASTQ S24_L006_R2 unaligned CPTAC3 3d3d4104-07ff-499d-b7c5-c67f354d8c3c 16d4065594a3b3d3c2784c847dc8a1ba {"aliquot_tag": "ALQ_dd5106d4", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02588.RNA-Seq.S7_L002_R1.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3807304647 FASTQ S7_L002_R1 unaligned CPTAC3 5218ecfd-40b8-4a1a-b114-0e9713e3758d 66b3eb6f7bd3032de62825954abca342 {"aliquot_tag": "ALQ_1cb20f2d", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.RNA-Seq.S7_L002_R2.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4125134372 FASTQ S7_L002_R2 unaligned CPTAC3 7647a638-17b5-4584-8f13-02dcdb31143b 03efdae0bfbe6b419de90e8cca57f42a {"aliquot_tag": "ALQ_1cb20f2d", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.RNA-Seq.transcriptome.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.transcriptome.gdc_realn.bam 8514889045 BAM transcriptome harmonized CPTAC3 3ed10dc3-f23c-475a-8f48-b4fe220a9b09 0daef698e2416d288cbef1d8a753541b {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.RNA-Seq.transcriptome.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.transcriptome.gdc_realn.bam 12440818738 BAM transcriptome harmonized CPTAC3 a2c0358c-a948-4a8c-851b-65fddedb2054 d32e7b100438e11b9eecbba2026b029e {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor"} -C3N-02588.Targeted.T C3N-02588 LUAD Targeted_Sequencing tumor CPT0148180010 CPT0148180010.CustomSelection.RP-1303.PDO-18786.bam 4664758335 BAM aligned CPTAC3 d7806929-4953-4442-a8c3-c5d8a4645f30 77037f439f4ea16bb636a3d1568327b6 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02588.Targeted.T.hg38 C3N-02588 LUAD Targeted_Sequencing tumor CPT0148180010 7c314644-9f5c-4fe4-8145-3c70a6d08133_targetedsequencing_gdc_realn.bam 6387054496 BAM harmonized CPTAC3 15a32e68-abd5-45ff-b944-ed9feefabc55 251cdee032b40db49de15acd309a2ac7 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02588.WGS.A C3N-02588 LUAD WGS tissue_normal CPT0148200009 CPT0148200009.WholeGenome.RP-1303.bam 63204677868 BAM aligned CPTAC3 00885bf4-951b-4601-a63d-7042dc231a6e faeaeb25c1b6f63a8185729cde43f605 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.WGS.A.hg38 C3N-02588 LUAD WGS tissue_normal CPT0148200009 fdb85fa8-e844-4264-a18d-e9ae929b7cc0_wgs_gdc_realn.bam 93103772541 BAM harmonized CPTAC3 74f578d4-3fa9-4236-96cc-4067ffabb4c6 27e72b227364b97b33e3eaa51ac509d6 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.WGS.N C3N-02588 LUAD WGS blood_normal CPT0148210002 CPT0148210002.WholeGenome.RP-1303.bam 65403865232 BAM aligned CPTAC3 639a5cab-1508-4db2-8103-c64510e6c602 83cee6d0b0ff198c23beca60d177a417 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal"} -C3N-02588.WGS.N.hg38 C3N-02588 LUAD WGS blood_normal CPT0148210002 a05ec13f-5c47-458c-8aea-1154de9ccba1_wgs_gdc_realn.bam 96160115740 BAM harmonized CPTAC3 098847a4-df2b-49e0-8511-3cb83fe7b996 8e6aebda6b1a8530f588367928a2a248 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal"} -C3N-02588.WGS.T C3N-02588 LUAD WGS tumor CPT0148180010 CPT0148180010.WholeGenome.RP-1303.bam 57038812412 BAM aligned CPTAC3 63e0a059-f278-4e3a-93c6-96cd6e9d1c62 f9efa204086e2c418dea019e5cb25333 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02588.WGS.T.hg38 C3N-02588 LUAD WGS tumor CPT0148180010 7c314644-9f5c-4fe4-8145-3c70a6d08133_wgs_gdc_realn.bam 83337665977 BAM harmonized CPTAC3 e2b63a92-2721-4557-b7c9-cd619e9812c8 3eb38a00ca9a48b01750342fd02984a2 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02588.WXS.A C3N-02588 LUAD WXS tissue_normal CPT0148200009 CPT0148200009.WholeExome.RP-1303.bam 25077455051 BAM aligned CPTAC3 f42f1e0d-acb8-438e-9d6b-479bf509943e ac7f9c10399f9b8f35f15e52505f386e {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.WXS.A.hg38 C3N-02588 LUAD WXS tissue_normal CPT0148200009 fdb85fa8-e844-4264-a18d-e9ae929b7cc0_wxs_gdc_realn.bam 33611725143 BAM harmonized CPTAC3 0286aa78-00ea-41fe-9b21-8013a64a908a e5ecf5e46ff064e92bb483c523de6496 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02588.WXS.N C3N-02588 LUAD WXS blood_normal CPT0148210002 CPT0148210002.WholeExome.RP-1303.bam 27096599869 BAM aligned CPTAC3 62fb8c25-b483-45d7-9e54-bd7078d5c910 527cf5bd76da7b208e751079dad47e35 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal"} -C3N-02588.WXS.N.hg38 C3N-02588 LUAD WXS blood_normal CPT0148210002 a05ec13f-5c47-458c-8aea-1154de9ccba1_wxs_gdc_realn.bam 36033314944 BAM harmonized CPTAC3 c463b66a-ba7d-479b-89d0-e48d7a801c83 fb7f613fcacac04b02540a04e5cfa5f2 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal"} -C3N-02588.WXS.T C3N-02588 LUAD WXS tumor CPT0148180010 CPT0148180010.WholeExome.RP-1303.bam 39151781185 BAM aligned CPTAC3 f9cc7d70-9cff-49f2-b95f-4e5c7508abe9 35e36e19defe005954107530a9f08fc6 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02588.WXS.T.hg38 C3N-02588 LUAD WXS tumor CPT0148180010 7c314644-9f5c-4fe4-8145-3c70a6d08133_wxs_gdc_realn.bam 54764778675 BAM harmonized CPTAC3 2ae183a5-d519-4133-aa51-b195ec309011 bf072a395f6b0ce16b4f7d2ddd8d31f3 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor"} -C3N-02589.MethArray.Green.A C3N-02589 PDA Methylation_Array tissue_normal CPT0162670007 203561620012_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e4b456df-3bec-41bd-86f2-1f525318dc18 13038b726c4181352fd791010ba4b41d {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.MethArray.Green.T C3N-02589 PDA Methylation_Array tumor CPT0162660007 203561450006_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 eac6b1b5-0aa0-45aa-8ca9-c552618fea8c a369ff51a26e7ef51336a033d5f001ce {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor"} -C3N-02589.MethArray.Red.A C3N-02589 PDA Methylation_Array tissue_normal CPT0162670007 203561620012_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 d4585fce-bd2a-431d-af51-bffaccb8900d d02bd18b259c82d510a588f4a7bd7287 {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.MethArray.Red.T C3N-02589 PDA Methylation_Array tumor CPT0162660007 203561450006_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 2865e782-f946-44b9-aab8-c21f829567a7 91cf2d598a711a060ab7211cbf362ded {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor"} -C3N-02589.miRNA-Seq.A.hg38 C3N-02589 PDA miRNA-Seq tissue_normal CPT0162670010 18ba3c36-065d-489b-b67f-19bcf52da9be_mirnaseq_gdc_realn.bam 283384872 BAM harmonized CPTAC3 8c95589e-d62a-4538-8420-183c8043c966 dfbcef9a8f24f69d3ec255111f5173ed {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.miRNA-Seq.S20_L003_R1.A C3N-02589 PDA miRNA-Seq tissue_normal CPT0162670010 190813_UNC32-K00270_0196_AH5MCWBBXY_CATTTT_S20_L003_R1_001.unaln.bam 249963429 BAM S20_L003_R1 unaligned CPTAC3 b9bb3b74-2bd0-454d-9416-84c2dd222a3f 7e7974c2a24df13bcdc343a7c75a0958 {"aliquot_tag": "ALQ_232e5d6c", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.miRNA-Seq.S40_L005_R1.T C3N-02589 PDA miRNA-Seq tumor CPT0162660010 190712_UNC32-K00270_0192_BH7HL3BBXY_GTAGAG_S40_L005_R1_001.unaln.bam 214692575 BAM S40_L005_R1 unaligned CPTAC3 7392f254-dfc8-49b5-8d51-28ad22fce2dc 19d5a2eb5aed2eb94090ca2e12074c91 {"aliquot_tag": "ALQ_1e4e74dc", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02589.miRNA-Seq.T.hg38 C3N-02589 PDA miRNA-Seq tumor CPT0162660010 75988f97-542f-410e-89d4-df85dad63b2d_mirnaseq_gdc_realn.bam 246832781 BAM harmonized CPTAC3 f13c3a88-cc3d-4195-9971-48ce3cf10a1e 3ef01f4f2e8ec9b13586fd209e4253c4 {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor"} -C3N-02589.RNA-Seq.chimeric.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.chimeric.gdc_realn.bam 47193877 BAM chimeric harmonized CPTAC3 0d2a1787-37d4-4c39-92a4-030e61ee95d1 4f3177718a1485721709388f23a9a73b {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.RNA-Seq.chimeric.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.chimeric.gdc_realn.bam 37343373 BAM chimeric harmonized CPTAC3 694847b6-db72-4589-91bf-424a29607f14 7cb2499325bce53735fd233f7d521ace {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor"} -C3N-02589.RNA-Seq.genomic.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.genomic.gdc_realn.bam 10123471423 BAM genomic harmonized CPTAC3 8cc2dd3e-b5eb-4a81-bfa3-bf11f7437c1e f2bcec8c98eeb71a8118ede073d02a71 {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.RNA-Seq.genomic.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.genomic.gdc_realn.bam 8662347769 BAM genomic harmonized CPTAC3 26fc9d10-47aa-4675-828b-6c416039bfd7 85377c692f935c66337fe730b76a3ec2 {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor"} -C3N-02589.RNA-Seq.S18_L005_R1.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R1_001.fastq.gz 4244742143 FASTQ S18_L005_R1 unaligned CPTAC3 3f1d0dc3-1de5-42d0-b534-8320064d881f 24a365d73dcf17c110fdf221eec3a54e {"aliquot_tag": "ALQ_1e4e74dc", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02589.RNA-Seq.S18_L005_R2.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R2_001.fastq.gz 4545951139 FASTQ S18_L005_R2 unaligned CPTAC3 a5c04d86-8a09-471f-8956-11e6c0c3df8c 63f0a4249c1eb914df02ce0922cba14f {"aliquot_tag": "ALQ_1e4e74dc", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02589.RNA-Seq.S23_L006_R1.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R1_001.fastq.gz 4518545951 FASTQ S23_L006_R1 unaligned CPTAC3 6cab4697-ccb1-4c67-8e6d-bbe7907f0ef6 9c33fd28acbd07023f59d9f4375b6438 {"aliquot_tag": "ALQ_232e5d6c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.RNA-Seq.S23_L006_R2.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R2_001.fastq.gz 5245948103 FASTQ S23_L006_R2 unaligned CPTAC3 76024d1f-9895-461b-8c5c-5e28dd523d4d 497443fd322de1c2c5c44f8effc6b158 {"aliquot_tag": "ALQ_232e5d6c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.RNA-Seq.transcriptome.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.transcriptome.gdc_realn.bam 12618553534 BAM transcriptome harmonized CPTAC3 032bb4b5-9ff3-4d6d-999d-d44852a5c9f2 bd245a9d7a0e12b9d985f0c51515c9ef {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.RNA-Seq.transcriptome.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.transcriptome.gdc_realn.bam 12033691608 BAM transcriptome harmonized CPTAC3 fa93ef83-a52a-4ed4-aba6-3105777b583c 69c3a2e00ae4e93cfbf246c024f7286a {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor"} -C3N-02589.WGS.N C3N-02589 PDA WGS blood_normal CPT0162700002 CPT0162700002.WholeGenome.RP-1303.bam 74920388053 BAM aligned CPTAC3 49e4f876-6f21-458b-b8b4-2f8f719c1377 c7b026447eb4d83661da9c72e053c3d6 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02589.WGS.N.hg38 C3N-02589 PDA WGS blood_normal CPT0162700002 66637cfa-407a-4d07-abc6-5ed16df0ddc4_wgs_gdc_realn.bam 108828000338 BAM harmonized CPTAC3 e5141fae-ff56-46d1-9593-39a000b93d8b 1ea45394f78bcfd3e02a7514f422c198 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02589.WGS.T C3N-02589 PDA WGS tumor CPT0162660007 CPT0162660007.WholeGenome.RP-1303.bam 158544822807 BAM aligned CPTAC3 2891a482-cc98-4405-93fd-9305dbb29fe2 e38a1c288f82251926c2c4ac817f27ed {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor"} -C3N-02589.WGS.T.hg38 C3N-02589 PDA WGS tumor CPT0162660007 caf681d2-5806-4cfe-994c-6466c2908f86_wgs_gdc_realn.bam 230751137688 BAM harmonized CPTAC3 74f9fad7-f4f7-4326-bfb0-f537e01f7f55 6e76acbfacb983cb6748b143f3cb5db2 {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor"} -C3N-02589.WXS.A C3N-02589 PDA WXS tissue_normal CPT0162670007 CPT0162670007.WholeExome.RP-1303.bam 22081027858 BAM aligned CPTAC3 dfb2dfb0-8eee-457f-a888-f7cb5147f0ee a5adca4b3288025fedc7623ba48dd5e6 {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.WXS.A.hg38 C3N-02589 PDA WXS tissue_normal CPT0162670007 dc6579e4-a39f-4d5b-934d-c2ae86d86794_wxs_gdc_realn.bam 30159342435 BAM harmonized CPTAC3 f24f7782-164c-47e6-b0d8-56ae6031020e 4e14ef3f5221c4f562aa92701c67829d {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02589.WXS.N C3N-02589 PDA WXS blood_normal CPT0162700002 CPT0162700002.WholeExome.RP-1303.bam 25301684258 BAM aligned CPTAC3 c355a45c-ec85-4cff-a82e-6f815f13b322 fe7a2b537ce1e6f31fdfe896bb30d1e4 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02589.WXS.N.hg38 C3N-02589 PDA WXS blood_normal CPT0162700002 66637cfa-407a-4d07-abc6-5ed16df0ddc4_wxs_gdc_realn.bam 34721742561 BAM harmonized CPTAC3 9b1b16ca-4dba-4f0f-a4b0-16588c3d3d05 c2dd5d70b2a3cddda8e7dce7d33507a6 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02589.WXS.T C3N-02589 PDA WXS tumor CPT0162660007 CPT0162660007.WholeExome.RP-1303.bam 30236393735 BAM aligned CPTAC3 84611962-0e51-4c1e-80a5-8b089da4c70f 7d0937e238e1c37209600463c186ad6d {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor"} -C3N-02589.WXS.T.hg38 C3N-02589 PDA WXS tumor CPT0162660007 caf681d2-5806-4cfe-994c-6466c2908f86_wxs_gdc_realn.bam 41965499075 BAM harmonized CPTAC3 72f2dee6-e7fb-429b-a5b0-68230437f99b b5f88553431dc9f545b2faefad4a94f6 {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_7615fff5.MethArray.Green.T C3N-02590 PDA Methylation_Array tumor CPT0187590020 203561450054_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e88d2890-28b0-47b5-aaa0-6256ecc28953 427b6845ba56b90f8cca75c971a76c5e {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_7615fff5.MethArray.Red.T C3N-02590 PDA Methylation_Array tumor CPT0187590020 203561450054_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 4280fa37-718d-463a-a423-bf2a0a2e2052 d67c7a265bf794f1ad9e425356b2a252 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_7615fff5.WGS.T C3N-02590 PDA WGS tumor CPT0187590020 CPT0187590020.WholeGenome.RP-1303.bam 57496710292 BAM aligned CPTAC3 685b3bb8-cb6e-41ca-954f-7bdf1d5687c7 4434546841e4c9ba4bf079daaf509415 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_7615fff5.WGS.T.hg38 C3N-02590 PDA WGS tumor CPT0187590020 66cd1789-c1cf-4b80-aa3b-76081ab0ea54_wgs_gdc_realn.bam 83690866151 BAM harmonized CPTAC3 8682ed8c-0406-48a5-9ba9-30b1e0e7958b 922b6f093d76764f59555ec05e2fca57 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_7615fff5.WXS.T C3N-02590 PDA WXS tumor CPT0187590020 CPT0187590020.WholeExome.RP-1303.bam 63041283424 BAM aligned CPTAC3 08dfed58-87d9-40c9-bddb-7591263acf11 e857bddcb895a58fe8fd3555765a62ef {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_7615fff5.WXS.T.hg38 C3N-02590 PDA WXS tumor CPT0187590020 66cd1789-c1cf-4b80-aa3b-76081ab0ea54_wxs_gdc_realn.bam 86827491680 BAM harmonized CPTAC3 60d3161a-5889-4f09-8a1f-5c02d20c4b15 c42f4cd4a9a0b7dfdbc1a5f530696ea3 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_9f765ac0.WGS.T C3N-02590 PDA WGS tumor CPT0187590026 CPT0187590026.WholeGenome.RP-1303.bam 139778751639 BAM aligned CPTAC3 02b393f0-a988-43df-97c0-4008606bf13f d5ac8920b0947e65f5f4d19f627a0bc3 {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_9f765ac0.WGS.T.hg38 C3N-02590 PDA WGS tumor CPT0187590026 aa022931-97a5-4a8f-89f0-6acbd1d6fc6c_wgs_gdc_realn.bam 203126922195 BAM harmonized CPTAC3 15cdcb37-01df-4016-810b-acf610bf26d0 247a7c5fd7a41d00f0a5f5fcf44f03b0 {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_9f765ac0.WXS.T C3N-02590 PDA WXS tumor CPT0187590026 CPT0187590026.WholeExome.RP-1303.bam 50413514189 BAM aligned CPTAC3 9d9f8dc0-4476-43eb-a68a-c56559689ec9 5b50bffef5596f44cdec4372c0a79e21 {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.DUP_9f765ac0.WXS.T.hg38 C3N-02590 PDA WXS tumor CPT0187590026 aa022931-97a5-4a8f-89f0-6acbd1d6fc6c_wxs_gdc_realn.bam 71035417727 BAM harmonized CPTAC3 28c76065-6382-4508-b859-3260f21669b5 57c9b435adbb8c81134a1774c2138cfc {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02590.miRNA-Seq.S6_L002_R1.T C3N-02590 PDA miRNA-Seq tumor CPT0187590016 190108_UNC31-K00269_0176_AHYGLVBBXX_GCCAAT_S6_L002_R1_001.unaln.bam 225584374 BAM S6_L002_R1 unaligned CPTAC3 4975d966-ffab-4a24-a2ea-e7f67761bde0 1493104f346b5a308274ab660129bf3f {"aliquot_tag": "ALQ_b45b0903", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02590.miRNA-Seq.T.hg38 C3N-02590 PDA miRNA-Seq tumor CPT0187590016 67b9fc7b-0477-494e-a59c-e3e905bb245a_mirnaseq_gdc_realn.bam 253829316 BAM harmonized CPTAC3 e5ae3251-d1d6-4ca4-929f-f8bf263ab367 9452c50eb12c6e104ae4101963b04e2f {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor"} -C3N-02590.RNA-Seq.chimeric.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.chimeric.gdc_realn.bam 9483334 BAM chimeric harmonized CPTAC3 3d05644f-7bd5-4a72-b513-e4ee9dbd3617 0c7895b8da0e5712ee3a3fe6b5eb4c03 {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor"} -C3N-02590.RNA-Seq.genomic.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.genomic.gdc_realn.bam 12776263409 BAM genomic harmonized CPTAC3 7a8f1808-115b-4153-87ae-92ed4db140de 9cbb7a6f0c1a1ba8fa40b7dacd8c7d30 {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor"} -C3N-02590.RNA-Seq.S2_L001_R1.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3131688108 FASTQ S2_L001_R1 unaligned CPTAC3 84d73b44-bbb1-4a25-99d4-b8f1b74f571c b119b1ab9d2c23b730f2c95599d9ca31 {"aliquot_tag": "ALQ_b45b0903", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02590.RNA-Seq.S2_L001_R2.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 3483715687 FASTQ S2_L001_R2 unaligned CPTAC3 83fd17f6-28eb-46d2-81b0-2ef839a1a9fd b1709f9b738bdf839f7fd2a4c0b9cc4c {"aliquot_tag": "ALQ_b45b0903", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02590.RNA-Seq.transcriptome.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.transcriptome.gdc_realn.bam 7164521480 BAM transcriptome harmonized CPTAC3 4bdcb7da-22fe-43b3-b781-a20da5e2b8a3 d3cfe3603f28118fbafe8786d7e2023d {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor"} -C3N-02590.WGS.N C3N-02590 PDA WGS blood_normal CPT0187630002 CPT0187630002.WholeGenome.RP-1303.bam 62669268624 BAM aligned CPTAC3 a7bdad43-f3fd-4058-a78a-34ef34bd3acd 6802686f28caa189549b0c9b8ebb0af3 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal"} -C3N-02590.WGS.N.hg38 C3N-02590 PDA WGS blood_normal CPT0187630002 ade0461b-bf5a-4f6c-8fee-09d43580e9c8_wgs_gdc_realn.bam 90540505781 BAM harmonized CPTAC3 dd10fbb1-dccd-4561-a48b-1ee485a78bef 5b04ef022e8fd357c59c9bd9b6583886 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal"} -C3N-02590.WXS.N C3N-02590 PDA WXS blood_normal CPT0187630002 CPT0187630002.WholeExome.RP-1303.bam 30121240731 BAM aligned CPTAC3 39604754-f3a4-46a6-901c-1b2d667ad74a 462a28ae64ecc7220868575add828de9 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal"} -C3N-02590.WXS.N.hg38 C3N-02590 PDA WXS blood_normal CPT0187630002 ade0461b-bf5a-4f6c-8fee-09d43580e9c8_wxs_gdc_realn.bam 41090038552 BAM harmonized CPTAC3 a0da46e0-ff1f-4434-997e-68947453421b a2fdf758635ad432f3b799382fe96992 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal"} -C3N-02590.WXS.T C3N-02590 PDA WXS tumor CPT0187590022 CPT0187590022.WholeExome.RP-1303.bam 36033454513 BAM aligned CPTAC3 7580b76c-0327-414e-99bd-e99392202b66 b3230644d8fc374cf84baad478cac8f9 {"aliquot_tag": "ALQ_981b9ed9", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_42c4a098.MethArray.Green.T C3N-02591 PDA Methylation_Array tumor CPT0162710028 203561620080_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 89bbbd5e-8f2b-4a2d-99dd-4114715f6756 0c54beee98ca88d971238ec599c7a067 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_42c4a098.MethArray.Red.T C3N-02591 PDA Methylation_Array tumor CPT0162710028 203561620080_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 ce7fd8cf-705f-4a47-af11-c7cf87f6039a 2366572d0388bfe989bb0c83cb7f8009 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_42c4a098.WGS.T C3N-02591 PDA WGS tumor CPT0162710028 CPT0162710028.WholeGenome.RP-1303.bam 113490519072 BAM aligned CPTAC3 4645829a-6698-4b8d-841b-a0517e75aa9e 42b5a34e304e4ebd3e84a3dae7b2b356 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_42c4a098.WGS.T.hg38 C3N-02591 PDA WGS tumor CPT0162710028 ac04ab66-7985-49f7-b93c-15543bedc183_wgs_gdc_realn.bam 164522380568 BAM harmonized CPTAC3 1b64353e-c790-4243-8abf-8c0daa45fc52 2c2a2518395f7a585dd532d7e25cac52 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_42c4a098.WXS.T C3N-02591 PDA WXS tumor CPT0162710028 CPT0162710028.WholeExome.RP-1303.bam 54648593175 BAM aligned CPTAC3 967859b6-b9ba-4f0a-bd76-172bf914bca1 7721d00df8535dab68583a4740ba1799 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_42c4a098.WXS.T.hg38 C3N-02591 PDA WXS tumor CPT0162710028 ac04ab66-7985-49f7-b93c-15543bedc183_wxs_gdc_realn.bam 77193314643 BAM harmonized CPTAC3 43299d09-3a6a-4682-ab39-4a2396d6f71c a38eaa48bac8344a9ca7c04be4d8aba2 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_5269ddf2.MethArray.Green.T C3N-02591 PDA Methylation_Array tumor CPT0162710034 203561450046_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 7b9ccc62-9004-4c66-ae37-6c59f001ddad d80ca16e339d9276a9743b34a47f7ade {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_5269ddf2.MethArray.Red.T C3N-02591 PDA Methylation_Array tumor CPT0162710034 203561450046_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 2ad2b5ba-1ec6-4399-ae61-5ebceca78583 0f35a41c9c73df91d9245926a6ccdd1e {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_5269ddf2.WGS.T C3N-02591 PDA WGS tumor CPT0162710034 CPT0162710034.WholeGenome.RP-1303.bam 127937314211 BAM aligned CPTAC3 545bc3ff-09be-41db-a68e-68742b7d39e5 793236f29c0dffaf757fd4a10da4b79e {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_5269ddf2.WGS.T.hg38 C3N-02591 PDA WGS tumor CPT0162710034 c62bcb6f-642a-42a2-a715-d7962bb7f8bc_wgs_gdc_realn.bam 183625036297 BAM harmonized CPTAC3 a52e3367-f8e9-465c-9912-6bcd91e2518b a7079b674de659efabc5cb1657b08798 {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_5269ddf2.WXS.T C3N-02591 PDA WXS tumor CPT0162710034 CPT0162710034.WholeExome.RP-1303.bam 48349896562 BAM aligned CPTAC3 f97ddea4-e55c-4caa-b712-1603730df0e4 5c9ae41358fd5064fccba09728570faf {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.DUP_5269ddf2.WXS.T.hg38 C3N-02591 PDA WXS tumor CPT0162710034 c62bcb6f-642a-42a2-a715-d7962bb7f8bc_wxs_gdc_realn.bam 68185993871 BAM harmonized CPTAC3 faefc7e3-98d6-4018-af5f-9674ffdf8c23 5f66cc1a899bb2316575d41d2a3421a3 {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02591.WGS.N C3N-02591 PDA WGS blood_normal CPT0162750002 CPT0162750002.WholeGenome.RP-1303.bam 77541630186 BAM aligned CPTAC3 aaefd7be-c9cd-4dbe-8671-ed4a0951ae45 0046ad6ed1cf0338c04b248f73ae9e1a {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02591.WGS.N.hg38 C3N-02591 PDA WGS blood_normal CPT0162750002 4968424c-2b02-4d69-92ca-6216433228ac_wgs_gdc_realn.bam 112329969836 BAM harmonized CPTAC3 af83a17a-141b-4f96-98fc-2b709c558b90 d421ed2e5920acc388e67ac501e00e6e {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02591.WXS.N C3N-02591 PDA WXS blood_normal CPT0162750002 CPT0162750002.WholeExome.RP-1303.bam 25610717920 BAM aligned CPTAC3 6f0f0dc2-b00d-4440-ba17-47c28396d9eb 9fb9672db674a0ab8b8a1680c8a00859 {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02591.WXS.N.hg38 C3N-02591 PDA WXS blood_normal CPT0162750002 4968424c-2b02-4d69-92ca-6216433228ac_wxs_gdc_realn.bam 35122427782 BAM harmonized CPTAC3 2ac0e90d-c37c-4044-aa66-74caed82b248 2fd2650f90e27884e462d4d3a2c09c67 {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02591.WXS.T C3N-02591 PDA WXS tumor CPT0162710030 CPT0162710030.WholeExome.RP-1303.bam 27939284227 BAM aligned CPTAC3 42d07bfb-e1e3-4936-95d1-aba0e3c26895 783fb6c5012a08327c7dafc6998c9184 {"aliquot_tag": "ALQ_550419eb", "gdc_sample_type": "Primary Tumor"} -C3N-02592.MethArray.Green.T C3N-02592 PDA Methylation_Array tumor CPT0162760006 203273630258_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8c2f67c5-a2ed-43c6-8617-4c42e766ad4b f728cb3269859f1357004f10acbd33b2 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor"} -C3N-02592.MethArray.Red.T C3N-02592 PDA Methylation_Array tumor CPT0162760006 203273630258_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 5a769678-cc53-47bc-b14c-df7eccd9d3ba 908be99562d62990611b8f61f7784786 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor"} -C3N-02592.miRNA-Seq.S11_L006_R1.T C3N-02592 PDA miRNA-Seq tumor CPT0162760009 190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L006_R1_001.unaln.bam 240691968 BAM S11_L006_R1 unaligned CPTAC3 030a0ace-f36d-4996-84a7-d9bd06f12293 7be2350b96ead9b8bed8b14305b45441 {"aliquot_tag": "ALQ_b5d52e9c", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02592.miRNA-Seq.T.hg38 C3N-02592 PDA miRNA-Seq tumor CPT0162760009 4670d6ec-b2f7-40d7-ae66-039ad794cc76_mirnaseq_gdc_realn.bam 264587731 BAM harmonized CPTAC3 32f7da4f-457f-439d-a8cf-940c96a30bb7 e5aec24ab824a2ed791d41bc0db52ead {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02592.RNA-Seq.chimeric.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.chimeric.gdc_realn.bam 38988076 BAM chimeric harmonized CPTAC3 07c69c7c-081f-46fa-8bb0-9691946f4a45 1e764756c57b3fa44d0e3a18b3892788 {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02592.RNA-Seq.genomic.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.genomic.gdc_realn.bam 10567659878 BAM genomic harmonized CPTAC3 4f67283c-e362-4bb1-b4d5-852b23a6ae6c 8fec6edb8db55c40af06c0627be6c823 {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02592.RNA-Seq.S20_L005_R1.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R1_001.fastq.gz 4240838662 FASTQ S20_L005_R1 unaligned CPTAC3 ebbfc55a-b377-42df-b70d-5afd5caf59c3 f9dc67c01e0408e79c51c5da8cc80ec2 {"aliquot_tag": "ALQ_b5d52e9c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02592.RNA-Seq.S20_L005_R2.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R2_001.fastq.gz 4592710542 FASTQ S20_L005_R2 unaligned CPTAC3 2ec7b054-6c3b-4ec8-b5ef-a6cb0c12db87 ecae262283c429462f614704feb38c3e {"aliquot_tag": "ALQ_b5d52e9c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02592.RNA-Seq.transcriptome.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.transcriptome.gdc_realn.bam 10915766366 BAM transcriptome harmonized CPTAC3 86f76124-1443-4262-8f64-a71b55b60b92 e216a81173c70ac8ba8b7e502f9cfeb6 {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor"} -C3N-02592.WGS.N C3N-02592 PDA WGS blood_normal CPT0162820002 CPT0162820002.WholeGenome.RP-1303.bam 55285214824 BAM aligned CPTAC3 b5015ca0-ccba-44c6-9e19-e89399dc8d89 7b6110b19fa22339e488a5321efacf34 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal"} -C3N-02592.WGS.N.hg38 C3N-02592 PDA WGS blood_normal CPT0162820002 e82ffcee-6ec4-4bfd-b8fd-1e92111a7ec3_wgs_gdc_realn.bam 81831792121 BAM harmonized CPTAC3 0d734c6a-2d89-483a-a2de-a647e6e3fa98 7190b17dc28d3754f617000c8df9bd96 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal"} -C3N-02592.WGS.T C3N-02592 PDA WGS tumor CPT0162760006 CPT0162760006.WholeGenome.RP-1303.bam 124697722454 BAM aligned CPTAC3 f69faf82-2ce7-4f15-9335-85c6c81fe7bf 599c01643e187aea29f82e393cb3112e {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor"} -C3N-02592.WGS.T.hg38 C3N-02592 PDA WGS tumor CPT0162760006 61953ee5-9be4-4e83-abae-1bc34aa7cbb0_wgs_gdc_realn.bam 184476106563 BAM harmonized CPTAC3 2321d986-be99-4b4b-bf09-222478456eaf aeb87dd9196c623f12c2f8f279782dbb {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor"} -C3N-02592.WXS.N C3N-02592 PDA WXS blood_normal CPT0162820002 CPT0162820002.WholeExome.RP-1303.bam 22243550826 BAM aligned CPTAC3 81841214-95c3-420a-bfb2-6eed0a9f581a 4db2c47343a3f70b61f3e2fa5509ea98 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal"} -C3N-02592.WXS.N.hg38 C3N-02592 PDA WXS blood_normal CPT0162820002 e82ffcee-6ec4-4bfd-b8fd-1e92111a7ec3_wxs_gdc_realn.bam 30449199716 BAM harmonized CPTAC3 0bf1b98c-fa49-4fb7-8b8c-edb0059aa775 38d95e27a81389217f2a9e9cf174cc04 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal"} -C3N-02592.WXS.T C3N-02592 PDA WXS tumor CPT0162760006 CPT0162760006.WholeExome.RP-1303.bam 50433519264 BAM aligned CPTAC3 a5724f15-059d-4dee-982f-e2425bf50421 4378ccb76ee5934ef0b2e3222ffa7733 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor"} -C3N-02592.WXS.T.hg38 C3N-02592 PDA WXS tumor CPT0162760006 61953ee5-9be4-4e83-abae-1bc34aa7cbb0_wxs_gdc_realn.bam 70267238794 BAM harmonized CPTAC3 bc04e678-67f7-4638-9a99-885776094996 4e6d54986261a035d06c1ca2af5b8389 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor"} -C3N-02594.ANN_9675dc49.RNA-Seq.chimeric.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.chimeric.gdc_realn.bam 198910292 BAM chimeric harmonized CPTAC3 53a81f89-6a9e-4ce4-8c9b-0558a2e9a083 8b74951e7eb32cc8f6009936dac16528 {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02594.ANN_9675dc49.RNA-Seq.genomic.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.genomic.gdc_realn.bam 12716389018 BAM genomic harmonized CPTAC3 deed7771-1fd1-4f25-a643-a86979f2d3ab 657944565ed3b3be4cb0077e9af8739f {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02594.ANN_9675dc49.RNA-Seq.S3_L005_R1.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R1_001.fastq.gz 4800841678 FASTQ S3_L005_R1 unaligned CPTAC3 3df2a0b9-0800-444f-a464-382f1eaca300 c14f2ac59b9e263ddcea552e8d0773cb {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02594.ANN_9675dc49.RNA-Seq.S3_L005_R2.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R2_001.fastq.gz 5330813125 FASTQ S3_L005_R2 unaligned CPTAC3 1a53587a-e0d6-41de-971b-1436817632be 642d718dfc6fb7b9b7edbe0f8265a113 {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02594.ANN_9675dc49.RNA-Seq.transcriptome.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.transcriptome.gdc_realn.bam 13067117801 BAM transcriptome harmonized CPTAC3 cf383da8-5e35-4bd5-9f5d-9c3bd80184bc 3a3a668241d703b13b696a9071952cfb {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02594.DUP_110a78ab.WXS.T C3N-02594 PDA WXS tumor CPT0187640030 CPT0187640030.WholeExome.RP-1303.bam 25901101185 BAM aligned CPTAC3 d2511eee-669e-452a-b796-d7e063da27fc 37411912274708ca9dddd4e3bec27143 {"aliquot_tag": "DUP_110a78ab", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02594.DUP_110a78ab.WXS.T.hg38 C3N-02594 PDA WXS tumor CPT0187640030 dde2da8d-74d7-4efe-91a2-9455a8ce0277_wxs_gdc_realn.bam 35790397792 BAM harmonized CPTAC3 3bde91a6-15fc-42ae-989c-ecf18bd66124 d745055aa66add774050f47517a0c7f8 {"aliquot_tag": "DUP_110a78ab", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02594.DUP_538c8d9a.RNA-Seq.chimeric.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.chimeric.gdc_realn.bam 317783491 BAM chimeric harmonized CPTAC3 71d13ba8-e3e9-4809-a013-263ad3ba6e20 408149af3ef5331103625c133b0cea2e {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_538c8d9a.RNA-Seq.genomic.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.genomic.gdc_realn.bam 7353677296 BAM genomic harmonized CPTAC3 61d4614b-045b-4ecb-be16-2f093a1fb0b6 074370fba400c41bfc069c02c11b1a86 {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_538c8d9a.RNA-Seq.S10_L003_R1.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3380538059 FASTQ S10_L003_R1 unaligned CPTAC3 3d612a4f-4fa0-4ac6-ac4a-1dc01ae3b6e1 c8279166a8685ce73107e52f616ade54 {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_538c8d9a.RNA-Seq.S10_L003_R2.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3693955184 FASTQ S10_L003_R2 unaligned CPTAC3 c5bb9fd2-e3fa-4064-8660-88e7e8500c2f 7936a99eccf8f32ef970f43b4e3c56fc {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_538c8d9a.RNA-Seq.transcriptome.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.transcriptome.gdc_realn.bam 8109679865 BAM transcriptome harmonized CPTAC3 36a3bd72-203e-4fdf-ad27-55d1d53812e7 d69213018510f1fd29a8a0723a785e5c {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_6511a3f9.RNA-Seq.chimeric.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.chimeric.gdc_realn.bam 531914580 BAM chimeric harmonized CPTAC3 3edb1bbb-123c-442c-aa39-17a23463967d d3776c8c7d16056f1045973e3cd26b52 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_6511a3f9.RNA-Seq.genomic.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.genomic.gdc_realn.bam 9203055307 BAM genomic harmonized CPTAC3 6de7f96a-a9f2-46a7-8d34-412b6ced2a3d e81b8d60879fcf415918e97761a0a7ee {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_6511a3f9.RNA-Seq.S19_L006_R1.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R1_001.fastq.gz 4202715688 FASTQ S19_L006_R1 unaligned CPTAC3 f0864d29-bcbe-411d-a4b2-642e28a958a3 45deb15487c315693ddb9873605fa3b1 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_6511a3f9.RNA-Seq.S19_L006_R2.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R2_001.fastq.gz 4465716068 FASTQ S19_L006_R2 unaligned CPTAC3 b35f33fa-faa7-48ad-b608-914bd6e7bf6e 92e17fe43a1ac658351f25885f145045 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_6511a3f9.RNA-Seq.transcriptome.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.transcriptome.gdc_realn.bam 10432131536 BAM transcriptome harmonized CPTAC3 4368b6d7-9c24-4248-80ca-a085fdf2d8ba a2edbb429c4fde869b1a88f55ea67a36 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02594.DUP_660d483d.WXS.T C3N-02594 PDA WXS tumor CPT0187640031 CPT0187640031.WholeExome.RP-1303.bam 29400549559 BAM aligned CPTAC3 060f38c1-cd10-44b7-850a-a5de5f0b5479 7b5c67805637e06aaee987e88a34db05 {"aliquot_tag": "DUP_660d483d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02594.DUP_660d483d.WXS.T.hg38 C3N-02594 PDA WXS tumor CPT0187640031 8214e73f-5332-4569-9f96-d9099fd112c3_wxs_gdc_realn.bam 40454753839 BAM harmonized CPTAC3 bbc00470-d5dc-4276-b1df-e9dd09dc776d fa0b56339df4fa5f3c3085db05ea7b77 {"aliquot_tag": "DUP_660d483d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02594.DUP_eaf53f21.WXS.N C3N-02594 PDA WXS blood_normal CPT0187700002 CPT0187700002.WholeExome.RP-1303.bam 36446945070 BAM aligned CPTAC3 b0f6783b-76a1-4bb5-8f2f-8cb20b494278 c29d2036900792dab7c59c241e8cbd06 {"aliquot_tag": "DUP_eaf53f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02594.DUP_eaf53f21.WXS.N.hg38 C3N-02594 PDA WXS blood_normal CPT0187700002 254a2cee-22d7-4d03-867a-a78b0ee78afa_wxs_gdc_realn.bam 49806469469 BAM harmonized CPTAC3 3133e6fc-60d7-400f-bc83-0a756ea002fe 463b8b0697380ef48b3ab4903bfeb1d1 {"aliquot_tag": "DUP_eaf53f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02595.MethArray.Green.T C3N-02595 UCEC Methylation_Array tumor CPT0181810007 203561450025_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b2e81e85-ffe6-4909-83da-5ba3a3002766 4dc55bfac01ec3808f472e341d0ef6f7 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.MethArray.Red.T C3N-02595 UCEC Methylation_Array tumor CPT0181810007 203561450025_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 967a558a-5b88-4239-aacb-c8b97f73bd44 3bffee10e3f7898b54a5b8330ab39886 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.miRNA-Seq.S35_L004_R1.T C3N-02595 UCEC miRNA-Seq tumor CPT0181810010 190508_UNC31-K00269_0215_BH7FYKBBXY_CATTTT_S35_L004_R1_001.unaln.bam 220335067 BAM S35_L004_R1 unaligned CPTAC3 14c1d43b-68c4-4cdd-a1cb-d244d3fcf31f 098968f349d9af630447c4a50400abf6 {"aliquot_tag": "ALQ_b206c113", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.miRNA-Seq.T.hg38 C3N-02595 UCEC miRNA-Seq tumor CPT0181810010 ce3d96ab-eada-49d1-9a5c-6d31b3eb6170_mirnaseq_gdc_realn.bam 253133999 BAM harmonized CPTAC3 b959229d-d654-4b0e-8a74-9de3985e1532 7802f9306cf03aded75ab17d9198b6fb {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.chimeric.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.chimeric.gdc_realn.bam 25164088 BAM chimeric harmonized CPTAC3 7c4bf1fe-a3d6-4abb-a4eb-c19acd7d0976 72bf6ab9561d64e79663fa1496ce64ff {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.chimeric.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.chimeric.gdc_realn.bam 17332744 BAM chimeric harmonized CPTAC3 beda5f5a-4fc5-46f9-bbae-aaa9ea076419 3caa6292ee03d1dcffd474e39a0111d7 {"aliquot_tag": "ALQ_5bbdbbdb", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.genomic.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.genomic.gdc_realn.bam 6029734631 BAM genomic harmonized CPTAC3 9e02cc72-53ef-4693-a771-177ce2dffe28 272ee1cbcff9e95b30fd0dba541436d3 {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.genomic.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.genomic.gdc_realn.bam 11098152717 BAM genomic harmonized CPTAC3 7e2ef1bd-f1c4-424c-841b-77a1aea5c0b2 b1ea87b0c60dc13dc801cdbd89e1e298 {"aliquot_tag": "ALQ_5bbdbbdb", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.S31_R1.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R1_001.fastq.gz 3512042391 FASTQ S31_R1 unaligned CPTAC3 e74c340f-5894-4818-8a0a-eb0042b026bc 5b3c4d85ff280281b1765726245d2fc6 {"aliquot_tag": "ALQ_5bbdbbdb", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.S31_R2.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R2_001.fastq.gz 3379384098 FASTQ S31_R2 unaligned CPTAC3 726830e3-7b38-447f-8f94-ee5ad3bc2419 44fac08f20c7c55f762bea676077beea {"aliquot_tag": "ALQ_5bbdbbdb", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.S8_L002_R1.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R1_001.fastq.gz 2826989732 FASTQ S8_L002_R1 unaligned CPTAC3 a2db1e76-1ff7-4d03-a36b-e152b29e5bfa 43ca177496ed6c5fedddf67360d36db0 {"aliquot_tag": "ALQ_b206c113", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.S8_L002_R2.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R2_001.fastq.gz 3269626696 FASTQ S8_L002_R2 unaligned CPTAC3 99c567b0-e990-42e3-b105-821e28c807f6 357e38b02fcddf639faac45c8a483be2 {"aliquot_tag": "ALQ_b206c113", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.transcriptome.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.transcriptome.gdc_realn.bam 7736082214 BAM transcriptome harmonized CPTAC3 decdc1d1-6984-40e4-8b40-7da87aa13da5 25300ed1cb29efb09a8e7e7f753399a6 {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor"} -C3N-02595.RNA-Seq.transcriptome.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.transcriptome.gdc_realn.bam 3486063938 BAM transcriptome harmonized CPTAC3 35b38fff-480d-4619-a5c0-a666634c1178 f8390fafbec1a877d6434cf209d5e23f {"aliquot_tag": "ALQ_5bbdbbdb", "gdc_sample_type": "Primary Tumor"} -C3N-02595.WGS.N C3N-02595 UCEC WGS blood_normal CPT0181870002 CPT0181870002.WholeGenome.RP-1303.bam 84255972269 BAM aligned CPTAC3 df272482-6602-457e-bb65-5dff204503bf a8d684a83fdd69df38104a49e6062731 {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02595.WGS.N.hg38 C3N-02595 UCEC WGS blood_normal CPT0181870002 ef5d49da-558d-4e70-850a-6ab1e14e0391_wgs_gdc_realn.bam 125247712621 BAM harmonized CPTAC3 070e3515-28d4-4825-ac12-adf3000d483b e5892ea1629c01e2d25fb92e28093b89 {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02595.WGS.T C3N-02595 UCEC WGS tumor CPT0181810007 CPT0181810007.WholeGenome.RP-1303.bam 67121438251 BAM aligned CPTAC3 9f924144-8772-4059-8260-c4cc788e074b e6f9185477bee5642a2a572909e74882 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.WGS.T.hg38 C3N-02595 UCEC WGS tumor CPT0181810007 c746228f-3b12-4522-abe2-493c8806a8da_wgs_gdc_realn.bam 99496727012 BAM harmonized CPTAC3 d0917318-5a13-4fd5-8977-8ae39658e478 0030860e391083f9e35a65d03d2adaf6 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.WXS.N C3N-02595 UCEC WXS blood_normal CPT0181870002 CPT0181870002.WholeExome.RP-1303.bam 21205446998 BAM aligned CPTAC3 fe88f3ec-7e64-4c1a-9f08-e9528207d5f3 724371598f6955c0abed0bf82933e505 {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02595.WXS.N.hg38 C3N-02595 UCEC WXS blood_normal CPT0181870002 ef5d49da-558d-4e70-850a-6ab1e14e0391_wxs_gdc_realn.bam 28824089389 BAM harmonized CPTAC3 3c3493c6-d9db-44a8-82ed-a4cb77378923 1d46771d22b85dffd1cc0c879648aa4b {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal"} -C3N-02595.WXS.T C3N-02595 UCEC WXS tumor CPT0181810007 CPT0181810007.WholeExome.RP-1303.bam 22234897265 BAM aligned CPTAC3 a6fe5f3b-b40c-4c86-ae18-3d60ce8053ed a62143573cc364d684ab5ab2cf0b274b {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor"} -C3N-02595.WXS.T.hg38 C3N-02595 UCEC WXS tumor CPT0181810007 c746228f-3b12-4522-abe2-493c8806a8da_wxs_gdc_realn.bam 31262804788 BAM harmonized CPTAC3 5bb6a580-8481-4e1a-afce-d2437e1a6b5b 3e05088ac4569dc0e2e65b8de14816ee {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor"} -C3N-02598.MethArray.Green.T C3N-02598 UCEC Methylation_Array tumor CPT0187960007 203561620086_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 4d766fc9-ee61-43e5-b845-4616026ed22f 69eb6ac8cb87a4c2cbc728163a6382ce {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor"} -C3N-02598.MethArray.Red.T C3N-02598 UCEC Methylation_Array tumor CPT0187960007 203561620086_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 d0de1503-1209-4fee-87e2-5f7c23417e23 bed5ddb96aa8169ad9260f1589a68466 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor"} -C3N-02598.miRNA-Seq.S20_L003_R1.T C3N-02598 UCEC miRNA-Seq tumor CPT0187960010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 234211367 BAM S20_L003_R1 unaligned CPTAC3 e3679da6-8b2d-4d8c-bead-c4cd6b21a0fd 364da1922073e6fbb5c359c0dd0a8d95 {"aliquot_tag": "ALQ_a8aafb9c", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02598.miRNA-Seq.T.hg38 C3N-02598 UCEC miRNA-Seq tumor CPT0187960010 72a58292-602e-4022-b008-d2a867a9b1ad_mirnaseq_gdc_realn.bam 269775854 BAM harmonized CPTAC3 8b872b99-f00c-4ca5-a403-664d271db087 402e5f6162294d4c6a03820ca2e92653 {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.chimeric.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.chimeric.gdc_realn.bam 30681214 BAM chimeric harmonized CPTAC3 ce3c4f85-211f-4d0b-b3ad-a03b6a094ca3 ba206d345c9bebc6180d8de93b1c1875 {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.chimeric.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.chimeric.gdc_realn.bam 38800441 BAM chimeric harmonized CPTAC3 1479c6e5-f711-42f7-8de0-7c2d9ff63b75 02a72663d054513ebede15d74cf80a26 {"aliquot_tag": "ALQ_1c1dc10b", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.genomic.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.genomic.gdc_realn.bam 7425033694 BAM genomic harmonized CPTAC3 13ca9fa7-a589-4c8f-868e-754352b2bc41 3bd27b151000e1b23a988a3ac5810e9a {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.genomic.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.genomic.gdc_realn.bam 15176021850 BAM genomic harmonized CPTAC3 92e9a23d-3670-4a5f-ab69-4769c0f1d72d 1ffeba00bee70c58bb0a8a3baa29a24a {"aliquot_tag": "ALQ_1c1dc10b", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.S24_L006_R1.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R1_001.fastq.gz 3501334415 FASTQ S24_L006_R1 unaligned CPTAC3 ed069b3a-4f43-4cf7-9618-7146440a4d5a 5f1b5b99bd6eee5f46b01ba747673220 {"aliquot_tag": "ALQ_a8aafb9c", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.S24_L006_R2.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R2_001.fastq.gz 4042694872 FASTQ S24_L006_R2 unaligned CPTAC3 70c7569f-ba60-4436-b121-8e2c7594613c 21b5c930ab9e79be73a646158a4d2ca9 {"aliquot_tag": "ALQ_a8aafb9c", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.S28_R1.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R1_001.fastq.gz 4876552121 FASTQ S28_R1 unaligned CPTAC3 5597d62b-d0ba-41f1-85e5-e0789d4c126e cf8a62d6fb8e90595e8690d7a67cb26f {"aliquot_tag": "ALQ_1c1dc10b", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.S28_R2.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R2_001.fastq.gz 4715268363 FASTQ S28_R2 unaligned CPTAC3 44bcb81f-cda0-42cb-9978-6653067da8ac bcd0c85ef361b8c6f9927694f8b7ae26 {"aliquot_tag": "ALQ_1c1dc10b", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.transcriptome.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.transcriptome.gdc_realn.bam 11662675624 BAM transcriptome harmonized CPTAC3 2fc5cf67-3db6-462e-b801-edb530869a00 ccaacf490d2729f08a8f6a4c882d314e {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor"} -C3N-02598.RNA-Seq.transcriptome.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.transcriptome.gdc_realn.bam 4221987176 BAM transcriptome harmonized CPTAC3 7fa7edcf-7819-4391-b3a6-effe21c5ad5a dfbd7c9ca0e5937a5c8aad12f4dbd917 {"aliquot_tag": "ALQ_1c1dc10b", "gdc_sample_type": "Primary Tumor"} -C3N-02598.WGS.N C3N-02598 UCEC WGS blood_normal CPT0188020002 CPT0188020002.WholeGenome.RP-1303.bam 79205612629 BAM aligned CPTAC3 bb5afaf9-4d7c-48c2-a08f-55067928dc56 c34d8e1eb0dd64049fd8fc0fbeac7445 {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal"} -C3N-02598.WGS.N.hg38 C3N-02598 UCEC WGS blood_normal CPT0188020002 aa9c04dc-d109-4e3c-96d3-814f821ef624_wgs_gdc_realn.bam 116719229925 BAM harmonized CPTAC3 60f817da-3428-402e-87a7-fc81b5f9b243 4ebbed58061c3c2d0de53e7861f2e1dd {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal"} -C3N-02598.WGS.T C3N-02598 UCEC WGS tumor CPT0187960007 CPT0187960007.WholeGenome.RP-1303.bam 72537021823 BAM aligned CPTAC3 3c6c9374-2df9-411c-9e0d-44058621ddb4 da4c2c3be4f3bbe1ecaaf2f2969c8248 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor"} -C3N-02598.WGS.T.hg38 C3N-02598 UCEC WGS tumor CPT0187960007 12bf4120-7e3c-48d9-b838-f3eeb9058dcd_wgs_gdc_realn.bam 106226696905 BAM harmonized CPTAC3 4e80ff51-ed80-492a-8278-a284a5a28dea ee86c823fce7496939abe657e1367bda {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor"} -C3N-02598.WXS.N C3N-02598 UCEC WXS blood_normal CPT0188020002 CPT0188020002.WholeExome.RP-1303.bam 20512348087 BAM aligned CPTAC3 9e72945b-2c94-4904-a5c1-1b0c7d3eacd8 ac54a162f14db5653bd954097203336c {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal"} -C3N-02598.WXS.N.hg38 C3N-02598 UCEC WXS blood_normal CPT0188020002 aa9c04dc-d109-4e3c-96d3-814f821ef624_wxs_gdc_realn.bam 28357812603 BAM harmonized CPTAC3 a9f8a244-fa91-44e1-97b6-45bec7895200 84b66fd4e1b455fb14ea6b2db2f4a27c {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal"} -C3N-02598.WXS.T C3N-02598 UCEC WXS tumor CPT0187960007 CPT0187960007.WholeExome.RP-1303.bam 26211119148 BAM aligned CPTAC3 3c484e79-e1a4-4b5a-b0f7-d8330f642ab3 03ca0202625fdc2b0891c11fd8a140c3 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor"} -C3N-02598.WXS.T.hg38 C3N-02598 UCEC WXS tumor CPT0187960007 12bf4120-7e3c-48d9-b838-f3eeb9058dcd_wxs_gdc_realn.bam 37184034002 BAM harmonized CPTAC3 8a1de291-39da-4eaa-8a72-927b1a1d5bf1 23d33bc5fab2b03fbe022d20c6707b06 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor"} -C3N-02599.MethArray.Green.T C3N-02599 GBM Methylation_Array tumor CPT0224840006 204367460011_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d0b9db37-e1db-4963-87ab-470d2382b585 4462c0256ba0a8f92a957597b6ee3b91 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor"} -C3N-02599.MethArray.Red.T C3N-02599 GBM Methylation_Array tumor CPT0224840006 204367460011_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 f4746f63-04f0-447a-90d5-fe95160b61e4 081bd120d47a555981eefcdbbf2d9298 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor"} -C3N-02599.miRNA-Seq.S24_L001_R1.T C3N-02599 GBM miRNA-Seq tumor CPT0224840013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 195500706 BAM S24_L001_R1 unaligned CPTAC3 e6e5d26d-2f56-46ab-9d8c-e0b5cb2ffd62 6a2878c6f2c3fc8cf621644a76e9ca2e {"aliquot_tag": "ALQ_199a1073", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02599.miRNA-Seq.T.hg38 C3N-02599 GBM miRNA-Seq tumor CPT0224840013 ec6c6d0e-2b20-4ad9-9cb1-5c7e7fc03453_mirnaseq_gdc_realn.bam 216716399 BAM harmonized CPTAC3 f8ddc7c6-3319-4b1a-b72d-53c3dd86f395 fc350138b7593157d216570b8fcebdf3 {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor"} -C3N-02599.RNA-Seq.chimeric.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.chimeric.gdc_realn.bam 24116823 BAM chimeric harmonized CPTAC3 8dc0c318-12cc-47da-8fb4-7d7c2ef1daa7 4df725a9bd9f96309ee229c08c6f4f38 {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor"} -C3N-02599.RNA-Seq.genomic.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.genomic.gdc_realn.bam 6979980365 BAM genomic harmonized CPTAC3 267749f0-8796-49d9-9d9d-5640ff45d9d2 b48b9a5fc06d6a847146daec243cc4f0 {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor"} -C3N-02599.RNA-Seq.S19_L005_R1.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R1_001.fastq.gz 3286785831 FASTQ S19_L005_R1 unaligned CPTAC3 48cfa054-e4e7-4707-8f4f-1464920cd330 183c5e235a9c00136eb7a9ac4b449744 {"aliquot_tag": "ALQ_199a1073", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02599.RNA-Seq.S19_L005_R2.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ S19_L005_R2 unaligned CPTAC3 f34ce994-d55e-49cb-bb17-93e3a4874810 435d813baa812c7764a77ba5509cf851 {"aliquot_tag": "ALQ_199a1073", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02599.RNA-Seq.transcriptome.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.transcriptome.gdc_realn.bam 8384008486 BAM transcriptome harmonized CPTAC3 1a32ba3a-3b5f-4dc4-8d34-e730227e221e 2b6138f7b61d8562fd82a6f47e58e09e {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor"} -C3N-02599.WGS.N C3N-02599 GBM WGS blood_normal CPT0224860002 CPT0224860002.WholeGenome.RP-2158.bam 24996003121 BAM aligned CPTAC3 474416f9-0b17-4e8b-8ebc-f81fbc3f399b 0ee5ef3b4fc3c1daeb44c0036180d6b3 {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02599.WGS.N.hg38 C3N-02599 GBM WGS blood_normal CPT0224860002 834e776f-c515-46ba-b94e-ae7afe7663ea_wgs_gdc_realn.bam 74853169740 BAM harmonized CPTAC3 68d465da-3999-4a59-8573-fe84d4170d38 53095a2d5416d2e7c9cfce94f52df618 {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02599.WGS.T C3N-02599 GBM WGS tumor CPT0224840006 CPT0224840006.WholeGenome.RP-2158.bam 23281634761 BAM aligned CPTAC3 632b83d0-1085-4038-a036-946722d426e8 4387845b184a7920ef67383b6b8ba58f {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor"} -C3N-02599.WGS.T.hg38 C3N-02599 GBM WGS tumor CPT0224840006 2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wgs_gdc_realn.bam 65754798136 BAM harmonized CPTAC3 1b532f93-73c6-4ace-b9fc-2ac02ba09301 9902bf5f8545c6e5b737b96a420f94c7 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor"} -C3N-02599.WXS.N C3N-02599 GBM WXS blood_normal CPT0224860002 CPT0224860002.WholeExome.RP-1303.bam 26628614397 BAM aligned CPTAC3 80e2e08c-f3ed-42f1-bbd8-5b5a5e21986f 10a323162cb7e3f24d72183e163f493b {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02599.WXS.N.hg38 C3N-02599 GBM WXS blood_normal CPT0224860002 834e776f-c515-46ba-b94e-ae7afe7663ea_wxs_gdc_realn.bam 37230237735 BAM harmonized CPTAC3 5aab09ad-6c94-42a4-bcc2-7ee916573a28 b9f07004e59e5905afaca07c88ab6c91 {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02599.WXS.T C3N-02599 GBM WXS tumor CPT0224840006 CPT0224840006.WholeExome.RP-1303.bam 20153296974 BAM aligned CPTAC3 15239510-48e4-45b0-9dd0-e37ea89ff0fd 0a312e533d0d71ee50f32494955b6e99 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor"} -C3N-02599.WXS.T.hg38 C3N-02599 GBM WXS tumor CPT0224840006 2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wxs_gdc_realn.bam 28203970919 BAM harmonized CPTAC3 9d643f49-1997-472d-817d-f06236fda307 00ead10f7193d4e6153f4e367d82c7b9 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor"} -C3N-02631.MethArray.Green.T C3N-02631 UCEC Methylation_Array tumor CPT0181960007 203561450030_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1086a9a9-0c3a-4553-9c5c-ef4c651c4b4d 8c4ca0c62ffbe2e052dc2ae9c0b72307 {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor"} -C3N-02631.MethArray.Red.T C3N-02631 UCEC Methylation_Array tumor CPT0181960007 203561450030_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 844c57ea-645a-4c82-b89f-3ce088195a8f d7359aff22f78544089807d810e2806f {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor"} -C3N-02631.miRNA-Seq.S36_L004_R1.T C3N-02631 UCEC miRNA-Seq tumor CPT0181960010 190508_UNC31-K00269_0215_BH7FYKBBXY_CCAACA_S36_L004_R1_001.unaln.bam 173046508 BAM S36_L004_R1 unaligned CPTAC3 62d16d52-db5d-4d6f-9eec-7da85e22851c 8eb16c55485ff91a3dfdc47130d2fb73 {"aliquot_tag": "ALQ_cb7acea6", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02631.miRNA-Seq.T.hg38 C3N-02631 UCEC miRNA-Seq tumor CPT0181960010 2ad2eb08-3b2d-4025-8030-b3b162877f95_mirnaseq_gdc_realn.bam 197395959 BAM harmonized CPTAC3 522c5e65-3615-40f2-9e0e-7d102f58c06b dfcd5e6edd28a0f98697f85916bfb995 {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.chimeric.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.chimeric.gdc_realn.bam 50852580 BAM chimeric harmonized CPTAC3 fa77bb3f-1a22-4e31-8a3e-927d5d833a78 3750cbf67490b4205ba99772200dad4c {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.chimeric.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.chimeric.gdc_realn.bam 198330909 BAM chimeric harmonized CPTAC3 aec80ae9-009b-453c-8d8b-dd4742e4671d 8cf3b81e925873574ceb37e8b2182e29 {"aliquot_tag": "ALQ_e7a5c817", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.genomic.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.genomic.gdc_realn.bam 10456610181 BAM genomic harmonized CPTAC3 1e14009d-b921-47a0-98e6-f2ad55a5440f 0752b313bf339677cacae3100af2401f {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.genomic.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.genomic.gdc_realn.bam 8595821724 BAM genomic harmonized CPTAC3 245c2f7f-c1e5-4f5a-b740-92ce920f0917 bb6e742b38d3c578ceee9a9ec012df39 {"aliquot_tag": "ALQ_e7a5c817", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.S20_R1.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R1_001.fastq.gz 4642136949 FASTQ S20_R1 unaligned CPTAC3 64680036-719e-49bf-a651-840cc7c87ea7 a1f8a55964511ef54910db93cef08eec {"aliquot_tag": "ALQ_e7a5c817", "sample": "S20", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.S20_R2.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R2_001.fastq.gz 4814916254 FASTQ S20_R2 unaligned CPTAC3 aadd2f47-382b-4aa1-a382-36d1c0d60b16 c2678e7c33c366144f9a89eb1edbba62 {"aliquot_tag": "ALQ_e7a5c817", "sample": "S20", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.S7_L002_R1.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R1_001.fastq.gz 5128385989 FASTQ S7_L002_R1 unaligned CPTAC3 b817e43b-48e8-4cda-b993-5ea7428bdf5e 09ab6306dc60ea144fc1a77ee3e31f9e {"aliquot_tag": "ALQ_cb7acea6", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.S7_L002_R2.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R2_001.fastq.gz 5777961856 FASTQ S7_L002_R2 unaligned CPTAC3 4d7ddade-b86d-4a41-9cd3-27a97288cebe 425a8f3b6e6921c3b4d39bf883c100e5 {"aliquot_tag": "ALQ_cb7acea6", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.transcriptome.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.transcriptome.gdc_realn.bam 12105429342 BAM transcriptome harmonized CPTAC3 7b6303ee-84c7-4a68-9daf-bcc12d55fc46 0efc6530888979a8f5e1f2728f54528a {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor"} -C3N-02631.RNA-Seq.transcriptome.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.transcriptome.gdc_realn.bam 3403640347 BAM transcriptome harmonized CPTAC3 a4470ceb-db90-4d13-a340-ac678ef61e12 99ba3cdf085c9ba996db694d08f2858c {"aliquot_tag": "ALQ_e7a5c817", "gdc_sample_type": "Primary Tumor"} -C3N-02631.WGS.N C3N-02631 UCEC WGS blood_normal CPT0182010002 CPT0182010002.WholeGenome.RP-1303.bam 71191712013 BAM aligned CPTAC3 4a5a3ff5-b326-4518-877b-13c262344f40 f559eceb8562c237c4f336f8d3401cf2 {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02631.WGS.N.hg38 C3N-02631 UCEC WGS blood_normal CPT0182010002 e3f73e35-fe83-48f7-9a6a-2d49f4b46a7d_wgs_gdc_realn.bam 103087909289 BAM harmonized CPTAC3 df09c8cd-57a3-4c2e-9449-4178ea2e0a25 ae9e268a34c56261591892eedd362a98 {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02631.WGS.T C3N-02631 UCEC WGS tumor CPT0181960007 CPT0181960007.WholeGenome.RP-1303.bam 64176906912 BAM aligned CPTAC3 69c75d77-e36f-4f38-acd6-ad646c2fd2ca 98c7a9caef15715a2b540be9e23bbbff {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor"} -C3N-02631.WGS.T.hg38 C3N-02631 UCEC WGS tumor CPT0181960007 79b230d0-788f-4ad3-8dce-89039234db0c_wgs_gdc_realn.bam 91406736937 BAM harmonized CPTAC3 19d3b007-3217-4014-8ad9-bd4d3c8f260d 2cc3c2a894f56b1343a20d2a0d4d3632 {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor"} -C3N-02631.WXS.N C3N-02631 UCEC WXS blood_normal CPT0182010002 CPT0182010002.WholeExome.RP-1303.bam 20895500107 BAM aligned CPTAC3 06213f2d-8d9b-436d-a980-5fa21382385a 5b080caf24bec82ab04dd4abc63ff1dd {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02631.WXS.N.hg38 C3N-02631 UCEC WXS blood_normal CPT0182010002 e3f73e35-fe83-48f7-9a6a-2d49f4b46a7d_wxs_gdc_realn.bam 28067240762 BAM harmonized CPTAC3 707c5e3f-c634-4570-9325-7e441b1f7578 2fb8d540d84e27b8b9ee5f545ba7c0de {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02631.WXS.T C3N-02631 UCEC WXS tumor CPT0181960007 CPT0181960007.WholeExome.RP-1303.bam 27773150496 BAM aligned CPTAC3 2b0abe31-3bbe-4d00-a8ff-9bb255af851f 0c3e3daad67f4da7be440cc5b485902c {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor"} -C3N-02631.WXS.T.hg38 C3N-02631 UCEC WXS tumor CPT0181960007 79b230d0-788f-4ad3-8dce-89039234db0c_wxs_gdc_realn.bam 37855573612 BAM harmonized CPTAC3 4cbf0f93-10a6-4d5a-b040-88fecbca03cb 4d818b52c710cf320c068b7cc781126c {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor"} -C3N-02632.MethArray.Green.T C3N-02632 UCEC Methylation_Array tumor CPT0182020007 203561620040_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 89d77ae1-284e-45f7-897c-a5f8b53adb13 c5a7b4fea7479405f8a30485f0d365ee {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.MethArray.Red.T C3N-02632 UCEC Methylation_Array tumor CPT0182020007 203561620040_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 d03a4907-4770-4af4-9699-ad0b257b4ca2 604207a442e14b99da9d11980888b85f {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.miRNA-Seq.S37_L004_R1.T C3N-02632 UCEC miRNA-Seq tumor CPT0182020010 190508_UNC31-K00269_0215_BH7FYKBBXY_CGGAAT_S37_L004_R1_001.unaln.bam 250826802 BAM S37_L004_R1 unaligned CPTAC3 a82e91f9-aa9a-41c2-82eb-f366a54cd1cb 4a29558524bc48ad9a00f37aac2131c9 {"aliquot_tag": "ALQ_281d2333", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.miRNA-Seq.T.hg38 C3N-02632 UCEC miRNA-Seq tumor CPT0182020010 fa9642a2-cdca-4e3a-ad10-8089e6d94464_mirnaseq_gdc_realn.bam 289195071 BAM harmonized CPTAC3 6cf34941-4d84-481f-a6ff-5ac8568b5e37 f105dd26b9bcffa367e39cc3983ab3cc {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.chimeric.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.chimeric.gdc_realn.bam 31342399 BAM chimeric harmonized CPTAC3 2be2a066-6eac-414f-8ed6-8c382e5c7ed0 009a1c73852ebaa9b2ccd9b23e386437 {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.chimeric.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.chimeric.gdc_realn.bam 119140328 BAM chimeric harmonized CPTAC3 60271d4d-b1ad-48cc-abc8-7f2569f7c390 565d8693632f4a7f21b47812490078ce {"aliquot_tag": "ALQ_9d659b77", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.genomic.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.genomic.gdc_realn.bam 7110081278 BAM genomic harmonized CPTAC3 59d1000e-5e17-4014-901c-696cc22ffeac b0b388fc8c6fb53094234db2bc4296ba {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.genomic.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.genomic.gdc_realn.bam 7658445606 BAM genomic harmonized CPTAC3 a62b2538-02df-459f-a182-c1231f33c691 77a840c73480c62e86a4b282fc29fbd0 {"aliquot_tag": "ALQ_9d659b77", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.S3_L001_R1.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R1_001.fastq.gz 3415264967 FASTQ S3_L001_R1 unaligned CPTAC3 1f16aa6a-8d94-4166-9256-c5feb6f52b4e 2f87697196deee9e8fcfbdf4f8d151de {"aliquot_tag": "ALQ_281d2333", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.S3_L001_R2.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R2_001.fastq.gz 3902068531 FASTQ S3_L001_R2 unaligned CPTAC3 7cc71d12-47fa-4e6d-ba71-c4d73d11bf7b 3337996ee7c102190386beff04d67e16 {"aliquot_tag": "ALQ_281d2333", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.S7_R1.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R1_001.fastq.gz 4137077202 FASTQ S7_R1 unaligned CPTAC3 f7689084-6616-4197-bed3-c7a7e7ecc1e5 dc7a48ebab3966eac86c30a0a99d1038 {"aliquot_tag": "ALQ_9d659b77", "sample": "S7", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.S7_R2.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R2_001.fastq.gz 4423394746 FASTQ S7_R2 unaligned CPTAC3 793f9aac-2b9e-4621-bc29-2ba889130e0a 5939e428d03c86db4ee04972b04c8f30 {"aliquot_tag": "ALQ_9d659b77", "sample": "S7", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.transcriptome.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.transcriptome.gdc_realn.bam 8431013885 BAM transcriptome harmonized CPTAC3 adcab6f2-1bf5-4ff9-b5cb-7be3f64efd04 e1308e41480c6a5c693cb199fd3c20b5 {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor"} -C3N-02632.RNA-Seq.transcriptome.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.transcriptome.gdc_realn.bam 3883758530 BAM transcriptome harmonized CPTAC3 87759341-cc30-4ce5-b663-9a126409e444 53f17ffaf6c3b858a9afaa481f34005d {"aliquot_tag": "ALQ_9d659b77", "gdc_sample_type": "Primary Tumor"} -C3N-02632.WGS.N C3N-02632 UCEC WGS blood_normal CPT0182060002 CPT0182060002.WholeGenome.RP-1303.bam 55782898233 BAM aligned CPTAC3 43ed19cd-ad45-452c-a9cd-81935661b0ac bdf2c2a8748d75e98f3fddcad1035839 {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02632.WGS.N.hg38 C3N-02632 UCEC WGS blood_normal CPT0182060002 fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wgs_gdc_realn.bam 81865411035 BAM harmonized CPTAC3 8f290dc8-ddeb-469e-a206-e684a6d46bff 63b3051d65557c9c585f905798f5df90 {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02632.WGS.T C3N-02632 UCEC WGS tumor CPT0182020007 CPT0182020007.WholeGenome.RP-1303.bam 81508660341 BAM aligned CPTAC3 663d75ad-ff59-41da-a372-fb043e6aad1e c7e4b6f8a2759ee55f6de7fb5b67ca21 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.WGS.T.hg38 C3N-02632 UCEC WGS tumor CPT0182020007 3e771046-4538-4fee-a130-0f28d72c7980_wgs_gdc_realn.bam 121486148375 BAM harmonized CPTAC3 5521ec1c-62b5-4597-92aa-98d826f63e9b e514a0902a7a7635d6996d24a3cf4e32 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.WXS.N C3N-02632 UCEC WXS blood_normal CPT0182060002 CPT0182060002.WholeExome.RP-1303.bam 23266297117 BAM aligned CPTAC3 4151c545-8d4d-4f42-a3cb-c79b6adda442 3c1303be59ec50d5c3e2c89da8f598ae {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02632.WXS.N.hg38 C3N-02632 UCEC WXS blood_normal CPT0182060002 fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wxs_gdc_realn.bam 31765484234 BAM harmonized CPTAC3 ad81e092-13f4-445d-bf08-b5d1854f9c0d 6a608100865be107abb298b18ee1fc8a {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal"} -C3N-02632.WXS.T C3N-02632 UCEC WXS tumor CPT0182020007 CPT0182020007.WholeExome.RP-1303.bam 22965123724 BAM aligned CPTAC3 f835131e-116e-40f9-93e8-1bfeadb98198 70f9b602b3d05c844d6580db23759791 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor"} -C3N-02632.WXS.T.hg38 C3N-02632 UCEC WXS tumor CPT0182020007 3e771046-4538-4fee-a130-0f28d72c7980_wxs_gdc_realn.bam 32031498465 BAM harmonized CPTAC3 19beb918-4541-47e8-a6d6-00316f87a698 99290500ab0ae74a8b21329367dc7f54 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.MethArray.Green.T C3N-02635 UCEC Methylation_Array tumor CPT0182070007 203561620049_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9585049c-44a9-4b58-b111-f094ef70e6a9 0bd67aac22f5f612bff548f059e38431 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.MethArray.Red.T C3N-02635 UCEC Methylation_Array tumor CPT0182070007 203561620049_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 023ac084-13fd-400a-82fd-828a611cbd78 7eb27b987f2901526f7372523d47b5f2 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.miRNA-Seq.S13_L001_R1.T C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 209090682 BAM S13_L001_R1 unaligned CPTAC3 10d4e0ce-d873-45ad-bee4-58e0759e6509 c354fee5285dcc87a45d91caaafd653c {"aliquot_tag": "ALQ_e0fdac43", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.miRNA-Seq.T.hg38 C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 79340e56-2474-4449-87fd-5b1eb6fd1096_mirnaseq_gdc_realn.bam 232822963 BAM harmonized CPTAC3 6b1e0e65-c63d-4ccb-b038-20ede1fd92bd dbb5891c9d829e0c40979520b56856d0 {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.chimeric.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.chimeric.gdc_realn.bam 41777003 BAM chimeric harmonized CPTAC3 769401a5-c77d-471c-8daf-e672102c83af 892987b6e5e8fe57651ada8806fc7f1a {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.chimeric.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.chimeric.gdc_realn.bam 126056275 BAM chimeric harmonized CPTAC3 17689245-4364-4c7e-a5c1-c8595f71e8e9 d1ea5c566a55f7d6bfe1fb28b428617c {"aliquot_tag": "ALQ_d979bd72", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.genomic.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.genomic.gdc_realn.bam 10205714657 BAM genomic harmonized CPTAC3 968393b2-8d06-4ec0-94b7-e2a0a89cbf8a 8817b700ade3a8b16b7cbb5727e3f147 {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.genomic.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.genomic.gdc_realn.bam 6324272588 BAM genomic harmonized CPTAC3 093c597c-8b3a-4082-ae26-12aadae240d2 78aa5617112cc264bc953542e3f05d8b {"aliquot_tag": "ALQ_d979bd72", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.S25_R1.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R1_001.fastq.gz 4371602771 FASTQ S25_R1 unaligned CPTAC3 ffaaa415-c2e6-4105-8b98-118b251eff9c 818484738635f6216c59396dc351c226 {"aliquot_tag": "ALQ_d979bd72", "sample": "S25", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.S25_R2.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R2_001.fastq.gz 4531988342 FASTQ S25_R2 unaligned CPTAC3 32b68fb6-e6ff-4fef-a1a8-943c917400e3 9d34da620d0759e07b4c39e50940b4a9 {"aliquot_tag": "ALQ_d979bd72", "sample": "S25", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.S32_L005_R1.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R1_001.fastq.gz 4970384764 FASTQ S32_L005_R1 unaligned CPTAC3 9fbae31c-9106-4246-b046-90893a57fc4e 24667d9de62a0a557b28542e55700a29 {"aliquot_tag": "ALQ_e0fdac43", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.S32_L005_R2.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R2_001.fastq.gz 5725054804 FASTQ S32_L005_R2 unaligned CPTAC3 c3a418a6-fe2a-484f-8094-eb9bfb0912c3 8f4288469924b85f411507b56b70ed1e {"aliquot_tag": "ALQ_e0fdac43", "sample": "S32", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.transcriptome.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.transcriptome.gdc_realn.bam 14011844474 BAM transcriptome harmonized CPTAC3 d670b17f-22a1-4caa-bbb7-56ed1f5e63a4 6f8945aff0fd9dbbf07f3ab1e34611bc {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor"} -C3N-02635.RNA-Seq.transcriptome.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.transcriptome.gdc_realn.bam 4373250118 BAM transcriptome harmonized CPTAC3 1db0100a-6174-4c8d-a73f-fa886ab1393d cfa5a00a1d2879475bc915b24cacc8a4 {"aliquot_tag": "ALQ_d979bd72", "gdc_sample_type": "Primary Tumor"} -C3N-02635.WGS.N C3N-02635 UCEC WGS blood_normal CPT0182130002 CPT0182130002.WholeGenome.RP-1303.bam 58388704721 BAM aligned CPTAC3 b7c5f0d6-4923-4170-8d60-b51c7edc7c24 3ab77bbe7de5cef26792de185dd77177 {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02635.WGS.N.hg38 C3N-02635 UCEC WGS blood_normal CPT0182130002 4720b4fd-df6b-43ad-b211-636f3dc15cd3_wgs_gdc_realn.bam 85215921322 BAM harmonized CPTAC3 f2ba4382-5fdf-4ea0-9a3e-547241605603 64b849937f3e64aafc1a8d4bf882a633 {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02635.WGS.T C3N-02635 UCEC WGS tumor CPT0182070007 CPT0182070007.WholeGenome.RP-1303.bam 70186343500 BAM aligned CPTAC3 f16fbf6d-e823-4efb-9618-049412f444db 5815906fadbac013245b1a9d1134e3e2 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.WGS.T.hg38 C3N-02635 UCEC WGS tumor CPT0182070007 2317f3c2-95b8-4bd8-a233-cc283ba04322_wgs_gdc_realn.bam 104887210447 BAM harmonized CPTAC3 cfff0772-0b61-40e0-a2c7-f60a88c0522a 296e1c23ae4250d5d5327d3d4f2a247d {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.WXS.N C3N-02635 UCEC WXS blood_normal CPT0182130002 CPT0182130002.WholeExome.RP-1303.bam 21686210928 BAM aligned CPTAC3 eb952386-e3be-4dd0-b4f6-68518a06e21f 72a0e298c643a6c0e59719976cbeef39 {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02635.WXS.N.hg38 C3N-02635 UCEC WXS blood_normal CPT0182130002 4720b4fd-df6b-43ad-b211-636f3dc15cd3_wxs_gdc_realn.bam 29516093308 BAM harmonized CPTAC3 0436b1c4-11a1-44d1-bcfa-5726382e554a 335cbf7c3a4c4cbcd34358cb2112b94c {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02635.WXS.T C3N-02635 UCEC WXS tumor CPT0182070007 CPT0182070007.WholeExome.RP-1303.bam 25972780515 BAM aligned CPTAC3 2a6a9332-c049-4399-b02e-a2efc6d29e78 539658e7a3b68bd56da1d05a7b2f1b26 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor"} -C3N-02635.WXS.T.hg38 C3N-02635 UCEC WXS tumor CPT0182070007 2317f3c2-95b8-4bd8-a233-cc283ba04322_wxs_gdc_realn.bam 36209004239 BAM harmonized CPTAC3 93143262-5e7b-445a-a15d-c42dff614bfe 2fd11db814a64bf12a0752e4970a5730 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor"} -C3N-02636.MethArray.Green.T C3N-02636 UCEC Methylation_Array tumor CPT0182150006 203561620012_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 dfd41da1-c607-4fdf-8532-3e1e4a0d54f5 bd75ed53b32d8c848ae0379acac479d3 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.MethArray.Red.T C3N-02636 UCEC Methylation_Array tumor CPT0182150006 203561620012_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 e04fad7f-cb79-4edf-a98e-29007ff601c5 d112e8c422becf8269920fb175ae8f06 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.miRNA-Seq.S42_L002_R1.T C3N-02636 UCEC miRNA-Seq tumor CPT0182150009 190813_UNC32-K00270_0196_AH5MCWBBXY_AGTCAA_S42_L002_R1_001.unaln.bam 149722495 BAM S42_L002_R1 unaligned CPTAC3 fb2d6b14-bd65-4a4b-9065-531b7fcc8ced 70ac41fe85d8f4285db4bb3f8eb7d856 {"aliquot_tag": "ALQ_31a6a563", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02636.miRNA-Seq.T.hg38 C3N-02636 UCEC miRNA-Seq tumor CPT0182150009 eca6d6e9-6c4a-4a13-80f3-edfaf83c246d_mirnaseq_gdc_realn.bam 172033558 BAM harmonized CPTAC3 114f40bc-9112-47f7-8249-8fdd6d915343 bbb5faf367de061890a8687c7b11ea1a {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.chimeric.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.chimeric.gdc_realn.bam 276032198 BAM chimeric harmonized CPTAC3 d5cae38d-d7a5-4fc6-9b35-93af5a6ac651 f81e6522a98cf71b30bb49c97055a390 {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.chimeric.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.chimeric.gdc_realn.bam 167830669 BAM chimeric harmonized CPTAC3 83db4c6e-9b8d-4ea9-b623-e1c579f649ae 02f6959f42b74bd51c2d02958c0b90b4 {"aliquot_tag": "ALQ_2cf91bb2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.genomic.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.genomic.gdc_realn.bam 8158293458 BAM genomic harmonized CPTAC3 019ddb8e-d313-49c5-93e9-7f10b933fe6f bfc9ab3525e8ae7e18a78cc2dd49defa {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.genomic.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.genomic.gdc_realn.bam 7817837155 BAM genomic harmonized CPTAC3 bb803f61-c1f5-4836-8fd9-3169e79ef164 08e4f524779da633eb92c58981e5a3cf {"aliquot_tag": "ALQ_2cf91bb2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.S20_L006_R1.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R1_001.fastq.gz 3095148371 FASTQ S20_L006_R1 unaligned CPTAC3 eaf9eb0b-a6d4-46e4-a16b-236286596dac b632dbd12df413c4fc9e12e04cc59685 {"aliquot_tag": "ALQ_31a6a563", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.S20_L006_R2.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R2_001.fastq.gz 3181532702 FASTQ S20_L006_R2 unaligned CPTAC3 d22260cd-c12a-4fac-9d4a-a594d060492a 015cdab99527ec9f3709874899c732e9 {"aliquot_tag": "ALQ_31a6a563", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.S95_R1.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R1_001.fastq.gz 4981876854 FASTQ S95_R1 unaligned CPTAC3 1327fe93-4b6d-4284-87f2-77eef733ced2 bbc6ac2668246ea33b021cba98e366d6 {"aliquot_tag": "ALQ_2cf91bb2", "sample": "S95", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.S95_R2.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R2_001.fastq.gz 5155550012 FASTQ S95_R2 unaligned CPTAC3 0335ed15-cc78-4232-806e-3d87e8089054 5a31bbfdbdb6c8a2edd9175f38242d4c {"aliquot_tag": "ALQ_2cf91bb2", "sample": "S95", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.transcriptome.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.transcriptome.gdc_realn.bam 6087641366 BAM transcriptome harmonized CPTAC3 232c9f36-8cd5-4d8f-909e-d6e1231980c7 1c26bce189635d3aca20f0ddbe105b47 {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor"} -C3N-02636.RNA-Seq.transcriptome.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.transcriptome.gdc_realn.bam 3972745117 BAM transcriptome harmonized CPTAC3 16ad6a2c-149a-46ff-9819-6b86d7339f03 1da480fbb249c371142e1486fe12ba92 {"aliquot_tag": "ALQ_2cf91bb2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.WGS.N C3N-02636 UCEC WGS blood_normal CPT0182200002 CPT0182200002.WholeGenome.RP-1303.bam 64785521804 BAM aligned CPTAC3 e0eb7713-78f8-4356-9ff9-d8b30a90b56c baa4c43093a2b21961754fa465da31d2 {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal"} -C3N-02636.WGS.N.hg38 C3N-02636 UCEC WGS blood_normal CPT0182200002 a719c0b5-a7fe-43fb-9701-a4ce7dc1e7c9_wgs_gdc_realn.bam 93196010994 BAM harmonized CPTAC3 1aa1192d-e409-49fc-b05c-043968506b95 f3c6357dc42a10cc3a88bec70111e7d6 {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal"} -C3N-02636.WGS.T C3N-02636 UCEC WGS tumor CPT0182150006 CPT0182150006.WholeGenome.RP-1303.bam 67507754105 BAM aligned CPTAC3 2df91048-9845-488a-87cd-b29034a67de1 cd22dfe15adbb657d4ce94acff0b5efe {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.WGS.T.hg38 C3N-02636 UCEC WGS tumor CPT0182150006 c534c4e3-a3c8-4afd-bfc7-0dbebc2518f7_wgs_gdc_realn.bam 99857193823 BAM harmonized CPTAC3 1abbf6b2-2c6a-4aa2-a150-e2841a3c2a46 440c58f34db8ecc98b2f2b8c6a359b28 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.WXS.N C3N-02636 UCEC WXS blood_normal CPT0182200002 CPT0182200002.WholeExome.RP-1303.bam 21571065274 BAM aligned CPTAC3 76fd50f1-609c-459f-abae-0a5851223eff d8011752a2bbfdc7215f424257494209 {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal"} -C3N-02636.WXS.N.hg38 C3N-02636 UCEC WXS blood_normal CPT0182200002 a719c0b5-a7fe-43fb-9701-a4ce7dc1e7c9_wxs_gdc_realn.bam 29653321246 BAM harmonized CPTAC3 2561b0d4-e5fd-42bf-b8bb-9b2377bbc5c1 3043c3e3d273905227fb87c7b3dced8a {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal"} -C3N-02636.WXS.T C3N-02636 UCEC WXS tumor CPT0182150006 CPT0182150006.WholeExome.RP-1303.bam 26059072765 BAM aligned CPTAC3 448fc7a5-015b-4a4d-98b1-9220bc2d4e4c 9120e3d041230374096dcfc90e8489d0 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor"} -C3N-02636.WXS.T.hg38 C3N-02636 UCEC WXS tumor CPT0182150006 c534c4e3-a3c8-4afd-bfc7-0dbebc2518f7_wxs_gdc_realn.bam 35407185207 BAM harmonized CPTAC3 88843a3e-5fc5-4c0c-b2e9-db56883fe97b 57ddcb561cb10f1671bf072bb9066f71 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor"} -C3N-02637.MethArray.Green.T C3N-02637 UCEC Methylation_Array tumor CPT0182210007 203561450006_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 521e3546-59dc-4ac4-8ead-89099a2382c5 51d753f0aa704e7768fe4a3ec5955512 {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor"} -C3N-02637.MethArray.Red.T C3N-02637 UCEC Methylation_Array tumor CPT0182210007 203561450006_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 4b0241d9-1057-4a16-8adb-e54a2f742583 f2d38b6bd5a7b56be469f8b78e4f803f {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor"} -C3N-02637.miRNA-Seq.S26_L004_R1.T C3N-02637 UCEC miRNA-Seq tumor CPT0182210010 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGAGC_S26_L004_R1_001.unaln.bam 181775593 BAM S26_L004_R1 unaligned CPTAC3 b254bb3f-366f-442d-a9d8-8fb193dc04b8 f00b575c37fa144ca9167377bee5248e {"aliquot_tag": "ALQ_2275f8e8", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02637.miRNA-Seq.T.hg38 C3N-02637 UCEC miRNA-Seq tumor CPT0182210010 9d1ec7b1-3121-4e72-bc72-616be92891aa_mirnaseq_gdc_realn.bam 206839585 BAM harmonized CPTAC3 a27cf41d-72ab-4573-b8b6-f545df767631 d13fbf2a8aebe9b16157b3b7a797ca60 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.chimeric.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.chimeric.gdc_realn.bam 46097815 BAM chimeric harmonized CPTAC3 1d0712bb-beba-4f63-bbd5-16f39fa4c905 decf85e6c228dcf071f2c03e48ba4dd0 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.chimeric.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.chimeric.gdc_realn.bam 165394152 BAM chimeric harmonized CPTAC3 a6a49b8e-3ed2-4d23-86bc-9bf183adbff8 9e944f91a38933bcea37de4ba889d166 {"aliquot_tag": "ALQ_563948d2", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.genomic.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.genomic.gdc_realn.bam 10855000992 BAM genomic harmonized CPTAC3 801a3406-df8d-4c03-a8ab-fcbb918368e8 a936ae67743c7ce414095a9ec17a9704 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.genomic.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.genomic.gdc_realn.bam 8357025610 BAM genomic harmonized CPTAC3 06e8f2ec-669e-4cd7-bd0f-1756ddb5f0a0 c6667745ab3f7b9da8800653a62e9953 {"aliquot_tag": "ALQ_563948d2", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.S14_L004_R1.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R1_001.fastq.gz 5134029896 FASTQ S14_L004_R1 unaligned CPTAC3 c180a005-af10-416f-8c52-6a1305d7e7ca acd25610cf9a65a6420f4658ecedbd5a {"aliquot_tag": "ALQ_2275f8e8", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.S14_L004_R2.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R2_001.fastq.gz 6015527868 FASTQ S14_L004_R2 unaligned CPTAC3 37c97a88-9e12-48e9-be31-e8d260abcf7d 95cea3b5e54e0c828ca259b6d3fc11cc {"aliquot_tag": "ALQ_2275f8e8", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.S80_R1.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R1_001.fastq.gz 4387379633 FASTQ S80_R1 unaligned CPTAC3 8f1cf5e9-e989-4e84-a8e3-30a2cb6e3c41 0a3d7f75dc7b19c82611197b48b72e82 {"aliquot_tag": "ALQ_563948d2", "sample": "S80", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.S80_R2.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R2_001.fastq.gz 4489164405 FASTQ S80_R2 unaligned CPTAC3 3fe94c4e-cec6-4028-9c39-cd22e2fab33a b79eef640d65ca1f940f7a884633cad3 {"aliquot_tag": "ALQ_563948d2", "sample": "S80", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.transcriptome.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.transcriptome.gdc_realn.bam 11787607555 BAM transcriptome harmonized CPTAC3 fed1bdca-70d1-4017-a986-304258fc8cd3 9235b032493517308730133d87ca23b6 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor"} -C3N-02637.RNA-Seq.transcriptome.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.transcriptome.gdc_realn.bam 3341490790 BAM transcriptome harmonized CPTAC3 c6f4d105-a3ed-493a-ab13-8551cb70efc8 c503f5fd8c6246ee28afb7da4443f1c3 {"aliquot_tag": "ALQ_563948d2", "gdc_sample_type": "Primary Tumor"} -C3N-02637.WGS.N C3N-02637 UCEC WGS blood_normal CPT0182270002 CPT0182270002.WholeGenome.RP-1303.bam 81310098707 BAM aligned CPTAC3 16bcb1bb-d388-4e1e-acab-f80b80669674 27f76de11abda9e4971dfacb9710d6db {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal"} -C3N-02637.WGS.N.hg38 C3N-02637 UCEC WGS blood_normal CPT0182270002 00464f90-2e5a-49b5-992a-4e03065e3c5c_wgs_gdc_realn.bam 118629098101 BAM harmonized CPTAC3 17978b7a-21a9-49df-9047-206d146e8c3f ec179c5511e26e72c85c87f72f18a8e0 {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal"} -C3N-02637.WGS.T C3N-02637 UCEC WGS tumor CPT0182210007 CPT0182210007.WholeGenome.RP-1303.bam 66739179719 BAM aligned CPTAC3 95c7eb99-871b-4c55-83c1-7c8e121176c6 739b8b17278e3481cbf605f572a8987e {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor"} -C3N-02637.WGS.T.hg38 C3N-02637 UCEC WGS tumor CPT0182210007 8c95a715-958e-4879-a387-badffb7e567f_wgs_gdc_realn.bam 98920260773 BAM harmonized CPTAC3 57280792-716d-4514-98b0-5734eb1e41cd 7341412ac197446e12030a0f9b830d2b {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor"} -C3N-02637.WXS.N C3N-02637 UCEC WXS blood_normal CPT0182270002 CPT0182270002.WholeExome.RP-1303.bam 24382548472 BAM aligned CPTAC3 97639699-7990-4642-9093-20e6b64cdc9c 4faab5c57c9e75e71eb566b497b85ccd {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal"} -C3N-02637.WXS.N.hg38 C3N-02637 UCEC WXS blood_normal CPT0182270002 00464f90-2e5a-49b5-992a-4e03065e3c5c_wxs_gdc_realn.bam 33060640278 BAM harmonized CPTAC3 85fa8da1-69e4-4f35-80aa-858cde789d16 aacc8bd3f6c960830bab62bf9e29a086 {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal"} -C3N-02637.WXS.T C3N-02637 UCEC WXS tumor CPT0182210007 CPT0182210007.WholeExome.RP-1303.bam 20273818468 BAM aligned CPTAC3 0318e87d-ee72-447b-8605-f4142e68c5d4 5e71024a7bd05c689de7b1bf341b29b4 {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor"} -C3N-02637.WXS.T.hg38 C3N-02637 UCEC WXS tumor CPT0182210007 8c95a715-958e-4879-a387-badffb7e567f_wxs_gdc_realn.bam 27756416050 BAM harmonized CPTAC3 90717d18-d8db-415b-87e9-055daa1b632a ca524a375908e15b6b1d2412de2041f4 {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor"} -C3N-02639.MethArray.Green.T C3N-02639 UCEC Methylation_Array tumor CPT0182290006 203561620043_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 79ee8412-da48-4ab3-b2fa-875f3e240f03 3d224512d9c85350cc1a7ddf80efeb2f {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor"} -C3N-02639.MethArray.Red.T C3N-02639 UCEC Methylation_Array tumor CPT0182290006 203561620043_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 79ee6811-3bf0-428f-afd1-fc9cba6a4591 add761660f9d3bfd206aab7d5378de11 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor"} -C3N-02639.miRNA-Seq.S27_L004_R1.T C3N-02639 UCEC miRNA-Seq tumor CPT0182290009 190508_UNC31-K00269_0215_BH7FYKBBXY_ATTCCT_S27_L004_R1_001.unaln.bam 195039462 BAM S27_L004_R1 unaligned CPTAC3 d3d1cb4b-de58-47b7-a564-a12d4db1bbd2 c5be598fc6316ff04475b44d1ff2c7e6 {"aliquot_tag": "ALQ_72c23acc", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02639.miRNA-Seq.T.hg38 C3N-02639 UCEC miRNA-Seq tumor CPT0182290009 3ca3760d-5b01-4df7-b6b5-b2bde0ee35f4_mirnaseq_gdc_realn.bam 219852798 BAM harmonized CPTAC3 3205929c-c0cd-4d24-aeba-3b2505113ec5 1ad2dd778f312f2248528b7f905d1f43 {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.chimeric.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.chimeric.gdc_realn.bam 35239576 BAM chimeric harmonized CPTAC3 145bddec-788c-4d37-954c-d7d78acec83a c1cc55cc86ab1c7b3e515fe4c134cf7c {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.chimeric.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.chimeric.gdc_realn.bam 179723394 BAM chimeric harmonized CPTAC3 dd139be1-59b3-426e-a7a7-a7b6087c7502 76eeb8459a0bfaa85f10035a555da6a0 {"aliquot_tag": "ALQ_5fedcfdc", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.genomic.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.genomic.gdc_realn.bam 7960325947 BAM genomic harmonized CPTAC3 ffed25b7-79ad-4540-9da1-3cdb0462e4ab e9473953008ee4af702233f4b83e0a56 {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.genomic.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.genomic.gdc_realn.bam 8233120817 BAM genomic harmonized CPTAC3 324d8bca-0735-45c9-bb76-a734399f7edb 5f00d285f89e1880b591e2d7b12aefd9 {"aliquot_tag": "ALQ_5fedcfdc", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.S13_L004_R1.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R1_001.fastq.gz 3786757673 FASTQ S13_L004_R1 unaligned CPTAC3 644687d8-1cf5-49bc-abf8-fa6ee85b5823 fd098a3ef460f456dbb6fdd1f89f9038 {"aliquot_tag": "ALQ_72c23acc", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.S13_L004_R2.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R2_001.fastq.gz 4329848029 FASTQ S13_L004_R2 unaligned CPTAC3 1ee14315-40b1-4f71-9ff8-3d5112b9dcb5 584c805889ec06f8a9e1865746c869a3 {"aliquot_tag": "ALQ_72c23acc", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.S72_R1.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R1_001.fastq.gz 4430176120 FASTQ S72_R1 unaligned CPTAC3 acbed472-88e6-4921-ac6c-476d0c6469b4 b57547a05ce18bf0eb682e830216bc3a {"aliquot_tag": "ALQ_5fedcfdc", "sample": "S72", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.S72_R2.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R2_001.fastq.gz 4588974531 FASTQ S72_R2 unaligned CPTAC3 dfaeda31-d434-48df-8665-aedb98453038 21d3d717586bb2004c5a7b69f20a848c {"aliquot_tag": "ALQ_5fedcfdc", "sample": "S72", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.transcriptome.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.transcriptome.gdc_realn.bam 8661165640 BAM transcriptome harmonized CPTAC3 8e52b3ba-bf37-4830-bf89-3d876ca7b3db 93c3ce9203007b11543ff6d6d8ed76ac {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor"} -C3N-02639.RNA-Seq.transcriptome.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.transcriptome.gdc_realn.bam 3402349083 BAM transcriptome harmonized CPTAC3 c7e6036e-017a-4442-83df-ac2791769bf2 6c9d996a8cb4805e7177779bc705b1ad {"aliquot_tag": "ALQ_5fedcfdc", "gdc_sample_type": "Primary Tumor"} -C3N-02639.WGS.N C3N-02639 UCEC WGS blood_normal CPT0182320002 CPT0182320002.WholeGenome.RP-1303.bam 71676985544 BAM aligned CPTAC3 24bffbe1-d9c2-43b0-9c73-66d33befbb12 1ff3feae8dd58681f81a4ef7ebdd75d2 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02639.WGS.N.hg38 C3N-02639 UCEC WGS blood_normal CPT0182320002 00d8b761-e94f-4271-b616-edc69f702391_wgs_gdc_realn.bam 106034460566 BAM harmonized CPTAC3 1aa94f20-ba8b-4173-a91a-2f820a1f14c9 a88ef69f6a947f7bcea0a86e9736fc07 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02639.WGS.T C3N-02639 UCEC WGS tumor CPT0182290006 CPT0182290006.WholeGenome.RP-1303.bam 65516795986 BAM aligned CPTAC3 f7759dcb-32fc-4d91-8e1e-91f7768d2d29 6885f0980bee31a39f2f676626b41a54 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor"} -C3N-02639.WGS.T.hg38 C3N-02639 UCEC WGS tumor CPT0182290006 e37b922b-5835-4a04-915b-7cb5d83b1f84_wgs_gdc_realn.bam 96071456183 BAM harmonized CPTAC3 9db7e9b9-f714-46bd-928a-6e5ac3fdfe33 7738718f1a6f2faeb72d96a055e532b8 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor"} -C3N-02639.WXS.N C3N-02639 UCEC WXS blood_normal CPT0182320002 CPT0182320002.WholeExome.RP-1303.bam 22156279122 BAM aligned CPTAC3 fe0681ed-789d-4105-a07b-3f494f5379e2 9d7539970fb02d50c78ac21538246378 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02639.WXS.N.hg38 C3N-02639 UCEC WXS blood_normal CPT0182320002 00d8b761-e94f-4271-b616-edc69f702391_wxs_gdc_realn.bam 30300164303 BAM harmonized CPTAC3 3f187a14-4838-4129-8a4e-96dd084bdbf0 954be2acbcc23bab05cafac2858407b6 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02639.WXS.T C3N-02639 UCEC WXS tumor CPT0182290006 CPT0182290006.WholeExome.RP-1303.bam 25946002445 BAM aligned CPTAC3 9af1a07f-3a45-4c16-835c-10e8b36c4e3b 18fa5758a7b6bcf47f6863eeb1d38da1 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor"} -C3N-02639.WXS.T.hg38 C3N-02639 UCEC WXS tumor CPT0182290006 e37b922b-5835-4a04-915b-7cb5d83b1f84_wxs_gdc_realn.bam 36309509636 BAM harmonized CPTAC3 a735dad5-87a1-49d0-b7c3-9981ea04b032 06cb12b132188abd72b8be6f11b8209f {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor"} -C3N-02672.MethArray.Green.A C3N-02672 LUAD Methylation_Array tissue_normal CPT0187150006 203219650211_R06C01_Grn.idat 13676235 IDAT Green NA CPTAC3 9d54ad11-287e-436b-94ea-34c59dcd7c6d fa636cbd484deec436bb27de2278635b {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.MethArray.Green.T C3N-02672 LUAD Methylation_Array tumor CPT0187140006 203219650176_R08C01_Grn.idat 13676220 IDAT Green NA CPTAC3 dd67fe67-b88e-4212-8b91-fc6311101ada 11533bfffed8c19ffe42e440b3094e5b {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor"} -C3N-02672.MethArray.Red.A C3N-02672 LUAD Methylation_Array tissue_normal CPT0187150006 203219650211_R06C01_Red.idat 13676235 IDAT Red NA CPTAC3 e30e682a-9e91-4bf6-8eb7-30e4afab9c81 6065952b31fda06f30c50d7882f83cc8 {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.MethArray.Red.T C3N-02672 LUAD Methylation_Array tumor CPT0187140006 203219650176_R08C01_Red.idat 13676220 IDAT Red NA CPTAC3 2d911ec4-c494-407b-8168-fe986a9843d0 f69bcd2c711dac01dc783d5bf6bc7c49 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor"} -C3N-02672.miRNA-Seq.A.hg38 C3N-02672 LUAD miRNA-Seq tissue_normal CPT0187150009 0987a3a5-b193-4e1f-b114-0ac572128f53_mirnaseq_gdc_realn.bam 234470562 BAM harmonized CPTAC3 5a98f12e-fce7-418c-9611-011661a9b927 1e5d4165837f88953787373c76267582 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.miRNA-Seq.S10_L006_R1.A C3N-02672 LUAD miRNA-Seq tissue_normal CPT0187150009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L006_R1_001.unaln.bam 212458690 BAM S10_L006_R1 unaligned CPTAC3 38b7ce96-6c43-4ad3-8046-6d83e5826d92 e8bfe0f676214813405087e6600083ab {"aliquot_tag": "ALQ_639e8ac4", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.miRNA-Seq.S3_L008_R1.T C3N-02672 LUAD miRNA-Seq tumor CPT0187140009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L008_R1_001.unaln.bam 275488120 BAM S3_L008_R1 unaligned CPTAC3 5f9d5212-4805-43ae-b273-fe1766746f85 2f97038cdf4c17e6357e44e646370eb1 {"aliquot_tag": "ALQ_5efea374", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02672.miRNA-Seq.T.hg38 C3N-02672 LUAD miRNA-Seq tumor CPT0187140009 af74793e-9308-4ca9-83b6-631db6d48ce7_mirnaseq_gdc_realn.bam 298096993 BAM harmonized CPTAC3 541460b4-d9ba-427f-a102-020d2c907036 d1760b7ddd59e4017f7808c146b45806 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor"} -C3N-02672.RNA-Seq.chimeric.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.chimeric.gdc_realn.bam 48765280 BAM chimeric harmonized CPTAC3 dffb0c9a-9980-4671-aae9-9fd43a06b55b 09257a9a2184ee9e5cf3d24155e0c0f6 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.RNA-Seq.chimeric.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.chimeric.gdc_realn.bam 395137570 BAM chimeric harmonized CPTAC3 a0109033-6edd-4ce8-b3ef-b4e19ebd7b1e 12adab292d223327b8d609c32834a112 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor"} -C3N-02672.RNA-Seq.genomic.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.genomic.gdc_realn.bam 8885532899 BAM genomic harmonized CPTAC3 ddd7a635-7772-4ad2-b265-a7269245249a 1e3c9f9463002ac450412c8f407b5263 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.RNA-Seq.genomic.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.genomic.gdc_realn.bam 10591219008 BAM genomic harmonized CPTAC3 d182f9b4-6da0-4fb9-a711-dcc15b56b9a0 dcc02d7f60628bd6cfb19631c86cd886 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor"} -C3N-02672.RNA-Seq.S22_L006_R1.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R1_001.fastq.gz 3892141783 FASTQ S22_L006_R1 unaligned CPTAC3 5618e0a9-eb80-4702-b4f8-4ed3320d8fed 86aa6b12c8296c05240e6578ef8af468 {"aliquot_tag": "ALQ_639e8ac4", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.RNA-Seq.S22_L006_R2.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R2_001.fastq.gz 4438018181 FASTQ S22_L006_R2 unaligned CPTAC3 1a8a3b4c-1913-4b5e-a1a0-ecb873b83953 b860489e537c0bbb1818a5eca1294744 {"aliquot_tag": "ALQ_639e8ac4", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.RNA-Seq.S24_L007_R1.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R1_001.fastq.gz 4722651371 FASTQ S24_L007_R1 unaligned CPTAC3 c09ebf88-ef8a-4352-9643-b3589b2d1a5b f811ba0b3e024d8738a901e5d16e4b17 {"aliquot_tag": "ALQ_5efea374", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02672.RNA-Seq.S24_L007_R2.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R2_001.fastq.gz 5103386418 FASTQ S24_L007_R2 unaligned CPTAC3 ed694d4c-bbf6-4c3e-a250-ae6318f879c3 85f806661f08f8b8d06d6d8b03ebbaa6 {"aliquot_tag": "ALQ_5efea374", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02672.RNA-Seq.transcriptome.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.transcriptome.gdc_realn.bam 9964371206 BAM transcriptome harmonized CPTAC3 9bd59659-d680-44e4-82d4-a202b00dcd15 edc9fc767cc36f0ede844136146852b0 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.RNA-Seq.transcriptome.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.transcriptome.gdc_realn.bam 12660332467 BAM transcriptome harmonized CPTAC3 c2cca0f3-79be-45c0-839d-8d33e4f41528 b36d66e1fd081cad6165a0a863e31f34 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor"} -C3N-02672.WGS.N C3N-02672 LUAD WGS blood_normal CPT0187310002 CPT0187310002.WholeGenome.RP-1303.bam 109521748483 BAM aligned CPTAC3 bba8c354-02df-4510-b025-c159c8370d2b 6c83446c9cc4261de940e2485408b311 {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal"} -C3N-02672.WGS.N.hg38 C3N-02672 LUAD WGS blood_normal CPT0187310002 d6f68369-a57e-4335-bea5-961283563bb4_wgs_gdc_realn.bam 157758081251 BAM harmonized CPTAC3 b420a52b-7f73-41ea-832d-33e76186d2d9 0a46e30f70ba94b3c739a1a9bf190084 {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal"} -C3N-02672.WGS.T C3N-02672 LUAD WGS tumor CPT0187140006 CPT0187140006.WholeGenome.RP-1303.bam 95190113646 BAM aligned CPTAC3 ff8348ce-ca28-40cd-be47-f4e4e6752c1a 49811c177f185b9c340a98c678847b07 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor"} -C3N-02672.WGS.T.hg38 C3N-02672 LUAD WGS tumor CPT0187140006 1afc8168-1ab4-4065-bed1-f6058b5c0e7e_wgs_gdc_realn.bam 133509633067 BAM harmonized CPTAC3 0ba8e418-b735-4739-86eb-f4f9b1adf016 ad4e12ecca886e2db7edba3e491df5fe {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor"} -C3N-02672.WXS.A C3N-02672 LUAD WXS tissue_normal CPT0187150006 CPT0187150006.WholeExome.RP-1303.bam 26557023176 BAM aligned CPTAC3 9d5f52de-5900-46c8-95d1-4a36ac24888f 6f7dc16b9595fff830655e89ac268277 {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.WXS.A.hg38 C3N-02672 LUAD WXS tissue_normal CPT0187150006 4326e8bf-a2a8-4e93-a10c-1565e387d2d8_wxs_gdc_realn.bam 36898214667 BAM harmonized CPTAC3 98e01a7d-47f4-4e4e-8623-243eeecd0427 33f95c4923b77dc69e907059b9aff50d {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02672.WXS.N C3N-02672 LUAD WXS blood_normal CPT0187310002 CPT0187310002.WholeExome.RP-1303.bam 23658000746 BAM aligned CPTAC3 0fde966d-30dd-4792-b4b8-75deaad7d22c b1cd92b5639c3bbe6141f5d88f40389d {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal"} -C3N-02672.WXS.N.hg38 C3N-02672 LUAD WXS blood_normal CPT0187310002 d6f68369-a57e-4335-bea5-961283563bb4_wxs_gdc_realn.bam 32240669095 BAM harmonized CPTAC3 254541eb-69b9-406f-affe-2491cac9ca24 6ffc28dc06dac6e24c6680f74e9b3df1 {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal"} -C3N-02672.WXS.T C3N-02672 LUAD WXS tumor CPT0187140006 CPT0187140006.WholeExome.RP-1303.bam 25187927514 BAM aligned CPTAC3 04c8473d-eb0f-44a5-a1a1-5d6a808f4a96 db422176f0aae3502a403e20a2d3cd74 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor"} -C3N-02672.WXS.T.hg38 C3N-02672 LUAD WXS tumor CPT0187140006 1afc8168-1ab4-4065-bed1-f6058b5c0e7e_wxs_gdc_realn.bam 34532277161 BAM harmonized CPTAC3 a44f0416-fb8d-4958-8233-227c63d3dfa7 6dab2ee2fb62be2d5098a575246882e0 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor"} -C3N-02675.MethArray.Green.T C3N-02675 LSCC Methylation_Array tumor CPT0187370006 203219650127_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 85271eb5-0ac9-4c87-a9d2-94b529bb0fef 0bbe1077e4aa48239a780a12fec5ffdb {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor"} -C3N-02675.MethArray.Red.T C3N-02675 LSCC Methylation_Array tumor CPT0187370006 203219650127_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 bd935cf9-11b5-444a-b99e-17182601bb3b 4a36115a2146bf75c63b7abfae221521 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor"} -C3N-02675.miRNA-Seq.A.hg38 C3N-02675 LSCC miRNA-Seq tissue_normal CPT0187380006 81df1b2e-a538-4c05-a23e-ebb65a8aaf51_mirnaseq_gdc_realn.bam 344027521 BAM harmonized CPTAC3 598971ad-dfb3-4b94-910c-4b1098b0822e 17eb6b25fe7718bb45f45f5937cc08d5 {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.miRNA-Seq.S12_L003_R1.T C3N-02675 LSCC miRNA-Seq tumor CPT0187370009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTTGTA_S12_L003_R1_001.unaln.bam 204567396 BAM S12_L003_R1 unaligned CPTAC3 df416aca-616b-41e2-b9f0-943a498b6f65 e87c2b5fa3f74e4a115b812f4847c61c {"aliquot_tag": "ALQ_549678af", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02675.miRNA-Seq.S43_L004_R1.A C3N-02675 LSCC miRNA-Seq tissue_normal CPT0187380006 181219_UNC31-K00269_0173_BHYGJJBBXX_TATAAT_S43_L004_R1_001.unaln.bam 310591695 BAM S43_L004_R1 unaligned CPTAC3 fcd2631a-f73c-49f7-a4a4-282342744626 f4abd06e4be86c1e5736a9abcae669da {"aliquot_tag": "ALQ_4679f2ef", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.miRNA-Seq.T.hg38 C3N-02675 LSCC miRNA-Seq tumor CPT0187370009 5076f611-0e52-4b94-8ce6-6d7e9c6aa7c7_mirnaseq_gdc_realn.bam 222249210 BAM harmonized CPTAC3 6fae347b-c0d0-4ef3-bd85-0483c43e3dbc a70a2689104a6c15704ea862ed104cb5 {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor"} -C3N-02675.RNA-Seq.chimeric.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.chimeric.gdc_realn.bam 186708894 BAM chimeric harmonized CPTAC3 e86e4191-9226-4cbe-b02b-3367c9aeb4af 8042983713d5acc699668ef7e75145ab {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.RNA-Seq.chimeric.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.chimeric.gdc_realn.bam 218309995 BAM chimeric harmonized CPTAC3 4558b346-073b-4970-b508-3d9393e42073 aab5ea7f5739419404b730f3f15dde03 {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor"} -C3N-02675.RNA-Seq.genomic.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.genomic.gdc_realn.bam 6608246091 BAM genomic harmonized CPTAC3 2cddb8bf-97f2-4842-8833-cf524a875572 ab8ab4d378319c0dd51dcd0ef4c1e0bc {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.RNA-Seq.genomic.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.genomic.gdc_realn.bam 8426223460 BAM genomic harmonized CPTAC3 0f85343c-74dd-4f74-84dc-604e6333c67d 0da3d4e118fe755dbe24d223db6155ef {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor"} -C3N-02675.RNA-Seq.S10_L003_R1.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 3957255137 FASTQ S10_L003_R1 unaligned CPTAC3 2a2faead-8ea1-410b-ad2d-ed3164511bbd 5b62708367f294edd2102ac4a45e69e2 {"aliquot_tag": "ALQ_549678af", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02675.RNA-Seq.S10_L003_R2.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4263034307 FASTQ S10_L003_R2 unaligned CPTAC3 3d304ca4-c27b-4541-aabc-37e79b91b03e b9bcab6f669ab92b699dc35cc08d2976 {"aliquot_tag": "ALQ_549678af", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02675.RNA-Seq.S24_L007_R1.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R1_001.fastq.gz 2926622604 FASTQ S24_L007_R1 unaligned CPTAC3 b20bef80-016d-49f1-8eea-e5e09bf6d499 93c629f94a04dbc66631e726efe3011c {"aliquot_tag": "ALQ_4679f2ef", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.RNA-Seq.S24_L007_R2.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R2_001.fastq.gz 3082829787 FASTQ S24_L007_R2 unaligned CPTAC3 9e8fed1d-63b1-434e-b294-03684885c147 463d5faea493a7c47fee06cf85332779 {"aliquot_tag": "ALQ_4679f2ef", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.RNA-Seq.transcriptome.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.transcriptome.gdc_realn.bam 8060060193 BAM transcriptome harmonized CPTAC3 bf0192fc-e4b6-4aaf-927f-d7aafe584648 8435b44a5c33483e27a773ed70d28e02 {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.RNA-Seq.transcriptome.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.transcriptome.gdc_realn.bam 9517931343 BAM transcriptome harmonized CPTAC3 e736904c-d12d-41ec-a1ac-5b557379e82b bec24851295639127c1ca2786430afec {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor"} -C3N-02675.WGS.A C3N-02675 LSCC WGS tissue_normal CPT0187380009 CPT0187380009.WholeGenome.RP-1303.bam 57386274745 BAM aligned CPTAC3 921b9a10-c339-4857-9f82-f63862504e41 2d5e701e0f86396c04fe3c00cad16a98 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.WGS.A.hg38 C3N-02675 LSCC WGS tissue_normal CPT0187380009 abe3dff6-cc15-4ea2-ba06-a1ae395fc746_wgs_gdc_realn.bam 83983330902 BAM harmonized CPTAC3 92e48373-e903-4089-93a1-5a80b2478351 fa3221d54bffc0a80a3500c7b9ac2522 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.WGS.N C3N-02675 LSCC WGS blood_normal CPT0187410002 CPT0187410002.WholeGenome.RP-1303.bam 66726887384 BAM aligned CPTAC3 c9d55747-85ca-49da-b5f0-d8ad7da072c2 80f9f9bc2b047cb1b98947bc65956ee9 {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02675.WGS.N.hg38 C3N-02675 LSCC WGS blood_normal CPT0187410002 fce61b54-8a30-48b3-ba10-2be185ce46c3_wgs_gdc_realn.bam 97745091869 BAM harmonized CPTAC3 46649ff8-5eef-461d-be8e-cb0e0b8ee733 2adaf6745a1c29c9f39c07852741e92c {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02675.WGS.T C3N-02675 LSCC WGS tumor CPT0187370006 CPT0187370006.WholeGenome.RP-1303.bam 61078523424 BAM aligned CPTAC3 24c0e2f9-7c10-4091-8108-5980e3503e26 a2fe3ae095da92fb7109204e9076be6f {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor"} -C3N-02675.WGS.T.hg38 C3N-02675 LSCC WGS tumor CPT0187370006 710d992c-4b0c-4c62-bd56-075b0b8ccd48_wgs_gdc_realn.bam 88814395582 BAM harmonized CPTAC3 fba389cc-6cd7-46e7-9329-36d4a2220191 bfff402a4c64dd539656f03bb4ad7c10 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor"} -C3N-02675.WXS.A C3N-02675 LSCC WXS tissue_normal CPT0187380009 CPT0187380009.WholeExome.RP-1303.bam 40311159862 BAM aligned CPTAC3 ea151d43-9680-40cc-98a8-d5f9c8ed0ed0 75cfe3a2cd8a53a8aa30438f716cfd90 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.WXS.A.hg38 C3N-02675 LSCC WXS tissue_normal CPT0187380009 abe3dff6-cc15-4ea2-ba06-a1ae395fc746_wxs_gdc_realn.bam 56897140681 BAM harmonized CPTAC3 ec5eb501-da03-48f0-88e5-e4103ba62739 11466e1c1cd8d35d650b6f4944db7538 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02675.WXS.N C3N-02675 LSCC WXS blood_normal CPT0187410002 CPT0187410002.WholeExome.RP-1303.bam 19538489726 BAM aligned CPTAC3 4a90c87b-adeb-48a0-bb18-ddaaf0d2170c a0db92fa801a5756d6f46c71da8c6a91 {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02675.WXS.N.hg38 C3N-02675 LSCC WXS blood_normal CPT0187410002 fce61b54-8a30-48b3-ba10-2be185ce46c3_wxs_gdc_realn.bam 26873956021 BAM harmonized CPTAC3 589bf1b6-fabf-403b-9026-85a37176cfba 5f5b380eb0a7b22aef814ba80e93ba40 {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02675.WXS.T C3N-02675 LSCC WXS tumor CPT0187370006 CPT0187370006.WholeExome.RP-1303.bam 19226270900 BAM aligned CPTAC3 8a4a34a6-9682-448e-b2b3-f36209e64e09 5e2ca96631371072f7b7430ef9aeb311 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor"} -C3N-02675.WXS.T.hg38 C3N-02675 LSCC WXS tumor CPT0187370006 710d992c-4b0c-4c62-bd56-075b0b8ccd48_wxs_gdc_realn.bam 27114621409 BAM harmonized CPTAC3 973de55c-7077-4f7d-883b-079c2b9da4f1 a2afd291d6bad4c6db5184baaa21e0c4 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor"} -C3N-02678.MethArray.Green.T C3N-02678 UCEC Methylation_Array tumor CPT0182340007 203561620072_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 381b6282-aa4d-4b5b-8a0e-a37d1a26d2fc ad89bc29422c1a3b598c6a111654552d {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor"} -C3N-02678.MethArray.Red.T C3N-02678 UCEC Methylation_Array tumor CPT0182340007 203561620072_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e7017913-ae91-4d3b-9de2-9b2ed83e9b03 94d0ed7ee1104a787ded20df2689e73b {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor"} -C3N-02678.miRNA-Seq.S14_L001_R1.T C3N-02678 UCEC miRNA-Seq tumor CPT0182340010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTTCC_S14_L001_R1_001.unaln.bam 301924540 BAM S14_L001_R1 unaligned CPTAC3 cf1b1095-6b47-43e7-a659-7d2f09ae03f8 db27d1a9d55d92796de8312870f32fa6 {"aliquot_tag": "ALQ_21c9a43d", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02678.miRNA-Seq.T.hg38 C3N-02678 UCEC miRNA-Seq tumor CPT0182340010 e913f0a9-d054-42b1-99ee-001cfdf1e317_mirnaseq_gdc_realn.bam 345208365 BAM harmonized CPTAC3 8c53ab57-068f-4f58-b3be-d60e532889d6 93ce5d07d8cd1e925c90ac2cb4858f1a {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.chimeric.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.chimeric.gdc_realn.bam 32215785 BAM chimeric harmonized CPTAC3 93ea17f4-5109-4dc8-806b-cac6dcbe9c66 2b988d94c8186f9d7d4c3471e53c8e31 {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.chimeric.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.chimeric.gdc_realn.bam 190228109 BAM chimeric harmonized CPTAC3 d5b75ac4-de33-45c0-8943-f78ac5844c28 adb291af0820587a4dce602aac971645 {"aliquot_tag": "ALQ_52fdadad", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.genomic.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.genomic.gdc_realn.bam 8105950781 BAM genomic harmonized CPTAC3 0795b2dd-4ad8-4640-9eac-adfe603abbc0 337d5b7ed5b7782d00d1a76204076030 {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.genomic.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.genomic.gdc_realn.bam 8625792035 BAM genomic harmonized CPTAC3 9fb93b50-880b-4378-8f22-1ca65736258b baa0735da7eb45895ea1bfd100d0fc71 {"aliquot_tag": "ALQ_52fdadad", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.S31_L005_R1.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R1_001.fastq.gz 3785854007 FASTQ S31_L005_R1 unaligned CPTAC3 c83686a4-c3bf-4237-ad36-cc4e3a437299 58d643202a969b2e5af01c3b138e8a21 {"aliquot_tag": "ALQ_21c9a43d", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.S31_L005_R2.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R2_001.fastq.gz 4391740200 FASTQ S31_L005_R2 unaligned CPTAC3 12b57388-d7fd-4fa5-962f-4c95af38f9a8 199bff4437aea3967494e5b9ff0cd7ac {"aliquot_tag": "ALQ_21c9a43d", "sample": "S31", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.S75_R1.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R1_001.fastq.gz 6626776231 FASTQ S75_R1 unaligned CPTAC3 421abc67-59ec-46b7-b13a-9bd718ba7208 d7ae8e1757c7fb230e3e401cf10f79fa {"aliquot_tag": "ALQ_52fdadad", "sample": "S75", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.S75_R2.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R2_001.fastq.gz 6912505116 FASTQ S75_R2 unaligned CPTAC3 729d183b-67fc-4822-b28f-cdc7728992cd 5cddbe63cadf9f95c2e4d5dabf7f8341 {"aliquot_tag": "ALQ_52fdadad", "sample": "S75", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.transcriptome.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.transcriptome.gdc_realn.bam 10555973338 BAM transcriptome harmonized CPTAC3 4f0581ce-ce00-40d6-85ec-b2dfc5b5417e 927a102f3cb183cad94486d83ece7ed9 {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor"} -C3N-02678.RNA-Seq.transcriptome.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.transcriptome.gdc_realn.bam 4361804382 BAM transcriptome harmonized CPTAC3 f6f0ce6c-c2a4-437f-9346-fb887b199bc0 1a0663f41b4bda7704fa9daa89cd2952 {"aliquot_tag": "ALQ_52fdadad", "gdc_sample_type": "Primary Tumor"} -C3N-02678.WGS.N C3N-02678 UCEC WGS blood_normal CPT0182370002 CPT0182370002.WholeGenome.RP-1303.bam 75363014340 BAM aligned CPTAC3 d047befe-df1d-434d-9f04-79ae1f3cf426 2118b043e6a46bdc04c5464f1afdf63c {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal"} -C3N-02678.WGS.N.hg38 C3N-02678 UCEC WGS blood_normal CPT0182370002 e63fe275-2c51-449e-805b-1a2447ccb101_wgs_gdc_realn.bam 109977924868 BAM harmonized CPTAC3 c5e83454-c52b-4426-a985-fe9ffdaa710f 87dff55056753581653694ab2e5d52ec {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal"} -C3N-02678.WGS.T C3N-02678 UCEC WGS tumor CPT0182340007 CPT0182340007.WholeGenome.RP-1303.bam 80763839420 BAM aligned CPTAC3 b1f00382-d6bf-4586-baf5-b931bb7a6800 4212f8fde142cf4be7b4a8ea6a16dc45 {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor"} -C3N-02678.WGS.T.hg38 C3N-02678 UCEC WGS tumor CPT0182340007 9807dd59-273e-4b26-ba72-f0ecc39ae673_wgs_gdc_realn.bam 119256411965 BAM harmonized CPTAC3 6d148de8-640e-4192-872b-cb71225ced22 342c40e1986d62294017c77c39b433a4 {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor"} -C3N-02678.WXS.N C3N-02678 UCEC WXS blood_normal CPT0182370002 CPT0182370002.WholeExome.RP-1303.bam 27706042598 BAM aligned CPTAC3 39fd72e1-196f-40bc-839d-8bbad19d6a03 8dc69bab210abedc18ae2338b7713ac4 {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal"} -C3N-02678.WXS.N.hg38 C3N-02678 UCEC WXS blood_normal CPT0182370002 e63fe275-2c51-449e-805b-1a2447ccb101_wxs_gdc_realn.bam 37542203716 BAM harmonized CPTAC3 ca16e0cd-da52-46c8-aa48-bf1c28ce3e22 23981cf98edb4c92d759f2c1802c2b71 {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal"} -C3N-02678.WXS.T C3N-02678 UCEC WXS tumor CPT0182340007 CPT0182340007.WholeExome.RP-1303.bam 21924948875 BAM aligned CPTAC3 ad8b9663-2ae1-4181-83eb-da9abad8cd99 5853226daf246270ced334d789f980ca {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor"} -C3N-02678.WXS.T.hg38 C3N-02678 UCEC WXS tumor CPT0182340007 9807dd59-273e-4b26-ba72-f0ecc39ae673_wxs_gdc_realn.bam 30860639161 BAM harmonized CPTAC3 d48f290b-3249-4db0-a7e3-de4b1c3c0406 ba43d82f72c7666c31a73bdbf56263fc {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor"} -C3N-02681.MethArray.Green.T C3N-02681 GBM Methylation_Array tumor CPT0224870006 204367400148_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 385674e5-9ff5-4f44-8936-323d4e7ddc75 57f120eff9f1bfeacbfbd3b0d21fc867 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor"} -C3N-02681.MethArray.Red.T C3N-02681 GBM Methylation_Array tumor CPT0224870006 204367400148_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 f6fb6624-00e6-41ab-b0b6-25d73f02a117 a5d02b9739760b18c4bb9e37cf78e324 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor"} -C3N-02681.miRNA-Seq.S20_L001_R1.T C3N-02681 GBM miRNA-Seq tumor CPT0224870009 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L001_R1_001.unaln.bam 404126709 BAM S20_L001_R1 unaligned CPTAC3 d3101058-1ae1-4bd5-937c-aa8cb895c8c0 e30def0150579c5234737ce1c34c3c78 {"aliquot_tag": "ALQ_a7f4b2fc", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02681.miRNA-Seq.T.hg38 C3N-02681 GBM miRNA-Seq tumor CPT0224870009 a1b4b1da-1b16-44a1-89f4-64ea9218c326_mirnaseq_gdc_realn.bam 440358841 BAM harmonized CPTAC3 b32908c3-4bcf-47cb-9b68-002c51ea2866 63e07ca0e1b1a7544a004b8a61a3d277 {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor"} -C3N-02681.RNA-Seq.chimeric.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.chimeric.gdc_realn.bam 33161553 BAM chimeric harmonized CPTAC3 206459a2-b872-4d59-922b-1b76e68fb060 2c49e3c1a202796bfad9882fb6ae4608 {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor"} -C3N-02681.RNA-Seq.genomic.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.genomic.gdc_realn.bam 7421482980 BAM genomic harmonized CPTAC3 3fcbdde0-f21d-46fc-aff7-368f2847e3ab 79ce3733b174ea46cee84da925c45306 {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor"} -C3N-02681.RNA-Seq.S10_L003_R1.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ S10_L003_R1 unaligned CPTAC3 a9a4c580-e93e-4331-bcd2-26bd9f24d024 2ae78b19896ae2a06ee16e04f7e27cfc {"aliquot_tag": "ALQ_a7f4b2fc", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02681.RNA-Seq.S10_L003_R2.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ S10_L003_R2 unaligned CPTAC3 17f81101-60cd-4f3f-905c-776206e75ed1 a5fd48e9b39ba8a15d982a7792fd8a7f {"aliquot_tag": "ALQ_a7f4b2fc", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02681.RNA-Seq.transcriptome.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.transcriptome.gdc_realn.bam 7721749236 BAM transcriptome harmonized CPTAC3 6a70da7e-c9c4-4d04-af70-3d09addfb6c5 782e612ed934232cbc3a0e7a0aba1f6f {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor"} -C3N-02681.WGS.N C3N-02681 GBM WGS blood_normal CPT0224890002 CPT0224890002.WholeGenome.RP-2158.bam 29513597556 BAM aligned CPTAC3 84be52db-65d0-4a40-9707-a7a31938a2b4 93f2092af659e9b5eb036575744cb5c2 {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal"} -C3N-02681.WGS.N.hg38 C3N-02681 GBM WGS blood_normal CPT0224890002 64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wgs_gdc_realn.bam 87927682035 BAM harmonized CPTAC3 fc1f6717-d9aa-4711-a859-63dfbebbb225 3d99d1e398ddca1e01cdff813d131f15 {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal"} -C3N-02681.WGS.T C3N-02681 GBM WGS tumor CPT0224870006 CPT0224870006.WholeGenome.RP-2158.bam 21588349176 BAM aligned CPTAC3 d6e95ce9-5c17-42a4-ad5f-7fd62229b2f8 ab991cc28e94d545e479809fe357300d {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor"} -C3N-02681.WGS.T.hg38 C3N-02681 GBM WGS tumor CPT0224870006 f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wgs_gdc_realn.bam 62459496300 BAM harmonized CPTAC3 fd143d44-a8c3-4f15-93c8-df50ef08f406 886b39eb57570f802e1c927f3da5047c {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor"} -C3N-02681.WXS.N C3N-02681 GBM WXS blood_normal CPT0224890002 CPT0224890002.WholeExome.RP-1303.bam 22672044861 BAM aligned CPTAC3 9e3323b4-5822-4ae6-b67d-5fd328904d51 4d7facbd49077c4d3c279f4ed29bea87 {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal"} -C3N-02681.WXS.N.hg38 C3N-02681 GBM WXS blood_normal CPT0224890002 64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wxs_gdc_realn.bam 30409997212 BAM harmonized CPTAC3 1dee4a31-a455-4094-9bca-8c5728420d08 e32aabf8695dd1d03f1091c373fb1a1a {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal"} -C3N-02681.WXS.T C3N-02681 GBM WXS tumor CPT0224870006 CPT0224870006.WholeExome.RP-1303.bam 21755322913 BAM aligned CPTAC3 21f33ee6-8a02-4c89-ad5f-1236f2b1b8d0 6cd94102ff26545973129ea9c47c3909 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor"} -C3N-02681.WXS.T.hg38 C3N-02681 GBM WXS tumor CPT0224870006 f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wxs_gdc_realn.bam 30168751979 BAM harmonized CPTAC3 6ea35233-7d7a-4a6a-ad94-c9be14124207 571ae6b770905c1a7180af19243d2612 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor"} -C3N-02682.MethArray.Green.T C3N-02682 GBM Methylation_Array tumor CPT0224900006 204930630082_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 57ff562b-2adb-4f56-b620-76858dc67487 9dcc0a89222a7a06976906022fca336a {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor"} -C3N-02682.MethArray.Red.T C3N-02682 GBM Methylation_Array tumor CPT0224900006 204930630082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 ec061ee7-dae9-48d1-b7e8-9540a2592361 a7a62061fba9fdaf752d501897a2947c {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor"} -C3N-02682.miRNA-Seq.S43_L002_R1.T C3N-02682 GBM miRNA-Seq tumor CPT0224900009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 222592560 BAM S43_L002_R1 unaligned CPTAC3 9d01dc24-eb15-4c28-bba9-f04775a98168 c8c95be2aeaa145208f2c8fcabbac0e6 {"aliquot_tag": "ALQ_de88bd49", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02682.miRNA-Seq.T.hg38 C3N-02682 GBM miRNA-Seq tumor CPT0224900009 034ae2ee-d3f8-4256-83c1-089148361759_mirnaseq_gdc_realn.bam 252734628 BAM harmonized CPTAC3 0023dbf5-2b24-4578-9392-180ffe74a898 ed455efe281b1dc88e85725f4bae72e3 {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor"} -C3N-02682.RNA-Seq.chimeric.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.chimeric.gdc_realn.bam 37961281 BAM chimeric harmonized CPTAC3 410039f2-fbff-48a0-a02e-c80dc7418a93 3eaa26db8fc198798d9c75e6e22699ac {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor"} -C3N-02682.RNA-Seq.genomic.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.genomic.gdc_realn.bam 8912091018 BAM genomic harmonized CPTAC3 3a33af12-883d-434b-b09e-1271e6f5cf1f 6099a23998d9c03570a43cb479b4f040 {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor"} -C3N-02682.RNA-Seq.S11_L003_R1.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ S11_L003_R1 unaligned CPTAC3 bdabb589-3cd2-4b0d-9710-b951fc336806 78f770e27956e9ee283579768c74539a {"aliquot_tag": "ALQ_de88bd49", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02682.RNA-Seq.S11_L003_R2.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ S11_L003_R2 unaligned CPTAC3 c36b01fb-a764-4899-8eaa-7df412ad8c7b c0535dc8e09ca2e6d179e20623f904c7 {"aliquot_tag": "ALQ_de88bd49", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02682.RNA-Seq.transcriptome.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.transcriptome.gdc_realn.bam 9478769771 BAM transcriptome harmonized CPTAC3 5908f4c4-c5c4-4f8c-8b07-329ccd08b034 16c0eafa4be5ae37c9eeafba6cbeda1e {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor"} -C3N-02682.WGS.N C3N-02682 GBM WGS blood_normal CPT0224920002 CPT0224920002.WholeGenome.RP-2158.bam 24539748739 BAM aligned CPTAC3 f0ea8630-6e1c-4904-98a2-7c2772da1ed7 d6ef5422ce8df34f3748fb80f26ff7f2 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02682.WGS.N.hg38 C3N-02682 GBM WGS blood_normal CPT0224920002 5854cf9a-665a-48c0-a765-43727b62ae6d_wgs_gdc_realn.bam 73004266622 BAM harmonized CPTAC3 2771f873-7104-4a2f-a186-ee4634ea8b5d 44a5e33f364c39b44562c6f1f5b11f09 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02682.WGS.T C3N-02682 GBM WGS tumor CPT0224900006 CPT0224900006.WholeGenome.RP-2158.bam 27140589506 BAM aligned CPTAC3 d07b3f98-fbba-4f88-8cd4-05b6b60fa2f4 6a97998c8531c2a5ed5a647cf81968ae {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor"} -C3N-02682.WGS.T.hg38 C3N-02682 GBM WGS tumor CPT0224900006 a96f6a16-6c6d-446b-8545-571072fd312a_wgs_gdc_realn.bam 79473733003 BAM harmonized CPTAC3 b805c3d4-0636-483f-ab8b-747e130cafff 7eba790a20b43755d7d3826c23645ebd {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor"} -C3N-02682.WXS.N C3N-02682 GBM WXS blood_normal CPT0224920002 CPT0224920002.WholeExome.RP-1303.bam 32308755616 BAM aligned CPTAC3 a49f2a7e-630a-4dc6-b2d6-b1ae75d1e82b 4d33649ec2d27be1d079e68fdf3f11a0 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02682.WXS.N.hg38 C3N-02682 GBM WXS blood_normal CPT0224920002 5854cf9a-665a-48c0-a765-43727b62ae6d_wxs_gdc_realn.bam 44410389015 BAM harmonized CPTAC3 8a53e18d-9895-42a2-9ec6-31f7bb5fcb77 549d917d173ca3fab57e760e49d03350 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02682.WXS.T C3N-02682 GBM WXS tumor CPT0224900006 CPT0224900006.WholeExome.RP-1303.bam 31079844576 BAM aligned CPTAC3 685fc795-d8a6-44db-9946-6abf67a1ea35 72d889c25439e208ad03686616c09de8 {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor"} -C3N-02682.WXS.T.hg38 C3N-02682 GBM WXS tumor CPT0224900006 a96f6a16-6c6d-446b-8545-571072fd312a_wxs_gdc_realn.bam 41646001362 BAM harmonized CPTAC3 307e94af-7463-4cec-a9e3-8f89ec1713a2 996102ecd75e624fdba62ab47d701625 {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor"} -C3N-02683.MethArray.Green.T C3N-02683 GBM Methylation_Array tumor CPT0224930006 204372030079_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0a9b2e20-870b-4a66-ab2f-051e2d554f25 529532979907946bd930507c78f56c38 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor"} -C3N-02683.MethArray.Red.T C3N-02683 GBM Methylation_Array tumor CPT0224930006 204372030079_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 5eedf5aa-57e1-4eda-adfd-8dd190a63470 60cc441b70054e307b51500d9dc95f13 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor"} -C3N-02683.miRNA-Seq.S26_L002_R1.T C3N-02683 GBM miRNA-Seq tumor CPT0224930012 200403_UNC31-K00269_0274_AHCF7GBBXY_CGATGT_S26_L002_R1_001.unaln.bam 268795788 BAM S26_L002_R1 unaligned CPTAC3 9f8c1f79-ac2c-4c9d-91ed-e1300d7c4b0d 179656880a8390577376203eaa89970f {"aliquot_tag": "ALQ_17e12f50", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02683.miRNA-Seq.T.hg38 C3N-02683 GBM miRNA-Seq tumor CPT0224930012 2cbef5f3-3bc6-474b-942b-4d9928326d28_mirnaseq_gdc_realn.bam 298296964 BAM harmonized CPTAC3 86cb8c5b-f827-4c92-a8ab-fef3d90b8eb3 7ca60f32150713f61f82dbd3444c7e63 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor"} -C3N-02683.RNA-Seq.chimeric.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.chimeric.gdc_realn.bam 305392204 BAM chimeric harmonized CPTAC3 f14b214a-5ff1-46a7-883a-c11118856160 f1729b289ab1132542297075bd7dd583 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor"} -C3N-02683.RNA-Seq.genomic.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.genomic.gdc_realn.bam 9611745269 BAM genomic harmonized CPTAC3 59c4ddf5-bfae-4be7-a981-43a7a322a121 de551856b7b0612855567d6b3e140108 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor"} -C3N-02683.RNA-Seq.S6_L007_R1.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ S6_L007_R1 unaligned CPTAC3 f88b71c6-807d-45d8-bb45-d6f1adb722e4 1c21125d789e0e7af18a6e61b0ddcdc4 {"aliquot_tag": "ALQ_17e12f50", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02683.RNA-Seq.S6_L007_R2.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ S6_L007_R2 unaligned CPTAC3 86f73dc2-f0b2-4857-9873-09673863a96a 82e5a3f4dec70d062ff644403fcbbb17 {"aliquot_tag": "ALQ_17e12f50", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02683.RNA-Seq.transcriptome.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.transcriptome.gdc_realn.bam 9299363306 BAM transcriptome harmonized CPTAC3 3ca3cb9e-adc1-4aee-9de6-b1a6ac357610 7868efe984b36fe6bece09fd8753aa46 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor"} -C3N-02683.WGS.N C3N-02683 GBM WGS blood_normal CPT0224950002 CPT0224950002.WholeGenome.RP-2158.bam 22007412977 BAM aligned CPTAC3 2d2be077-64ee-4be0-934e-ffa2f0c44fb0 d1b0a28f94567a0db7f69734383b86a3 {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02683.WGS.N.hg38 C3N-02683 GBM WGS blood_normal CPT0224950002 63e86eb1-34a0-4930-ab71-1e80bca277ed_wgs_gdc_realn.bam 67714893079 BAM harmonized CPTAC3 61819705-e22c-4d38-9cac-3d53f1d640fa 7f668186c3bb0669ea0983536e887320 {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02683.WGS.T C3N-02683 GBM WGS tumor CPT0224930006 CPT0224930006.WholeGenome.RP-2158.bam 20774991918 BAM aligned CPTAC3 6eced862-2a89-414c-bc4b-7c0d197bbe49 fec26ca396989f5f58b0a01727584459 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor"} -C3N-02683.WGS.T.hg38 C3N-02683 GBM WGS tumor CPT0224930006 17fb3ecc-d825-4e43-a854-3494772f2488_wgs_gdc_realn.bam 60609807639 BAM harmonized CPTAC3 126f97d8-c3e5-4676-87e4-f0e71791a784 3e1782efc49d7d08e618a62646c5dd60 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor"} -C3N-02683.WXS.N C3N-02683 GBM WXS blood_normal CPT0224950002 CPT0224950002.WholeExome.RP-1303.bam 17787837151 BAM aligned CPTAC3 592cfbb3-28f9-49a9-832f-b583e604e6c6 2476b0e86b220678fbcc721bce06a5db {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal CPT0224950002 63e86eb1-34a0-4930-ab71-1e80bca277ed_wxs_gdc_realn.bam 24195719764 BAM harmonized CPTAC3 d0263ae2-aa97-470b-9b51-bb94d28b6edc 5268af91e7c5914eb96dde24a31cd006 {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02683.WXS.T C3N-02683 GBM WXS tumor CPT0224930006 CPT0224930006.WholeExome.RP-1303.bam 19826009056 BAM aligned CPTAC3 361c9812-014e-44d2-9ecd-453e0f9f99f8 5efb2348fd07a3c61b3aaa6aacb65e68 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor"} -C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor CPT0224930006 17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM harmonized CPTAC3 69b5d037-e728-49dc-8fa6-ff955e5ace97 c7e2ce1b86a853afe0a4e01d2ec41a65 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor"} -C3N-02684.miRNA-Seq.A.hg38 C3N-02684 GBM miRNA-Seq tissue_normal CPT0404570010 093cd092-2e78-41eb-a1c4-9dcfb64cbf72_mirnaseq_gdc_realn.bam 319653613 BAM harmonized CPTAC3 80235cba-341b-47d5-9716-cfb09730b6a2 16c607235d0ae0ffe3ce1f3a2f2554af {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.miRNA-Seq.S32_L005_R1.A C3N-02684 GBM miRNA-Seq tissue_normal CPT0404570010 210702_UNC32-K00270_0289_AHKJ22BBXY_CATTTT_S32_L005_R1_001.unaln.bam 289271828 BAM S32_L005_R1 unaligned CPTAC3 7c1a1eed-ec0e-4ec1-9247-bbc69e7ab201 882610cb71b88ee61570ff3b4ee9a51a {"aliquot_tag": "ALQ_4a925630", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.RNA-Seq.chimeric.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.chimeric.gdc_realn.bam 118849340 BAM chimeric harmonized CPTAC3 ac226bda-fd62-4c36-9059-731a1d562df6 181da6364d9613c57fc4198f1eb69401 {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.RNA-Seq.genomic.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.genomic.gdc_realn.bam 8285546489 BAM genomic harmonized CPTAC3 cd799b7e-354f-40ab-a95a-eb0e62225112 12ed3f21bb131c63f5ee325699f02e84 {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.RNA-Seq.S18_L005_R1.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ S18_L005_R1 unaligned CPTAC3 e9d5ecfa-3887-4f7c-876b-e7addf0fa54d bd1589694b214bda8f6e3da954073675 {"aliquot_tag": "ALQ_4a925630", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.RNA-Seq.S18_L005_R2.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R2_001.fastq.gz 4022996013 FASTQ S18_L005_R2 unaligned CPTAC3 7513f50c-a395-49c5-8076-da5d97a21a2d c8686b7129d6edb71be27fd13500abce {"aliquot_tag": "ALQ_4a925630", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.RNA-Seq.transcriptome.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.transcriptome.gdc_realn.bam 9836334658 BAM transcriptome harmonized CPTAC3 4f171781-04c6-4c63-af25-1c69fdebaa63 2e76d5227b0dfe69e5382ab80eca7c70 {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.WXS.A C3N-02684 GBM WXS tissue_normal CPT0404570007 CPT0404570007.WholeExome.RP-1303.bam 27582047056 BAM aligned CPTAC3 d15b182d-611b-41a1-b525-b1debc36c6e4 06fd5b6938a195b1d0113a441ea06cd6 {"aliquot_tag": "ALQ_cdedf2d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.WXS.A.hg38 C3N-02684 GBM WXS tissue_normal CPT0404570007 b94f84b6-e892-44f2-96e8-2d8d01b75a83_wxs_gdc_realn.bam 38176829942 BAM harmonized CPTAC3 8b978087-6503-4c83-bad4-b870180bbe95 356c00f9cfe0194e771fc39425119390 {"aliquot_tag": "ALQ_cdedf2d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02684.WXS.N C3N-02684 GBM WXS blood_normal CPT0404640002 CPT0404640002.WholeExome.RP-1303.bam 29153735919 BAM aligned CPTAC3 01198a6c-3221-44f0-97b0-2f583b4b1f54 1f29cd19bc7b3b80490d508d49707bad {"aliquot_tag": "ALQ_7cb30e23", "gdc_sample_type": "Blood Derived Normal"} -C3N-02684.WXS.N.hg38 C3N-02684 GBM WXS blood_normal CPT0404640002 8e74fbec-acd7-4634-a057-fb7a7fdac99d_wxs_gdc_realn.bam 40509541711 BAM harmonized CPTAC3 36ea9e25-fd16-43e8-a544-62be15bf70c5 0bc2d86b95966b5a82a1e5f457c6712f {"aliquot_tag": "ALQ_7cb30e23", "gdc_sample_type": "Blood Derived Normal"} -C3N-02688.MethArray.Green.A C3N-02688 LSCC Methylation_Array tissue_normal CPT0312920006 204372030076_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a1dad805-ac26-4af1-b7ca-571ad271f815 fa6bc94b4d886d9586c275922ca69d9a {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.MethArray.Green.T C3N-02688 LSCC Methylation_Array tumor CPT0312910006 204372030127_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 161f8c43-043b-4d18-87e9-4526d98453c5 df1a94012402f599ed268eb01c6bee01 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor"} -C3N-02688.MethArray.Red.A C3N-02688 LSCC Methylation_Array tissue_normal CPT0312920006 204372030076_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 15b2c74b-dba2-43b6-b7e2-c578b5eddd7a 000326a874f6e98624bcf4f989dd4314 {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.MethArray.Red.T C3N-02688 LSCC Methylation_Array tumor CPT0312910006 204372030127_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 b585a793-5c65-47dc-a86c-3176ef9ee4ad 4698900170d044183f87d2a2804fd484 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor"} -C3N-02688.miRNA-Seq.A.hg38 C3N-02688 LSCC miRNA-Seq tissue_normal CPT0312920009 d00920ca-4e46-4bb0-aded-5cf69517f27b_mirnaseq_gdc_realn.bam 250886309 BAM harmonized CPTAC3 ebae80d1-2c0b-4b88-8d5f-86c7f31cca8d 3033fc7007bb7a107c51a59fe8e525d8 {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.miRNA-Seq.S11_L008_R1.T C3N-02688 LSCC miRNA-Seq tumor CPT0312910009 200224_UNC31-K00269_0267_AHC722BBXY_GGCTAC_S11_L008_R1_001.unaln.bam 236071444 BAM S11_L008_R1 unaligned CPTAC3 235f3879-e620-4693-98e6-2730194e2016 be6a0437c6c74509e07d2ba39ea917fc {"aliquot_tag": "ALQ_19ccb263", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02688.miRNA-Seq.S5_L005_R1.A C3N-02688 LSCC miRNA-Seq tissue_normal CPT0312920009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATCACG_S5_L005_R1_001.unaln.bam 222260978 BAM S5_L005_R1 unaligned CPTAC3 86615d19-d945-4322-9f2e-f47e81401fe1 5a71a4279e6b7133f676e49d8c584593 {"aliquot_tag": "ALQ_5e6cc8b3", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.miRNA-Seq.T.hg38 C3N-02688 LSCC miRNA-Seq tumor CPT0312910009 caa1123b-8a05-4c0c-8a63-f29f2348ba74_mirnaseq_gdc_realn.bam 261205317 BAM harmonized CPTAC3 8846dcfd-79ea-4a17-bed3-85a2209cb2da 13bfdeb615c1f2b3ce1fbefc8e625530 {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor"} -C3N-02688.RNA-Seq.chimeric.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.chimeric.gdc_realn.bam 43614935 BAM chimeric harmonized CPTAC3 4472fc85-234a-43a1-b129-ae80b9f72d57 3edb63a90f03ca4f7315ee0b0d00a37b {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.RNA-Seq.chimeric.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.chimeric.gdc_realn.bam 31188718 BAM chimeric harmonized CPTAC3 5f447095-3d00-4804-bce2-1bd49171cffe e7cd74581eef61e54cccbadc30993cc0 {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor"} -C3N-02688.RNA-Seq.genomic.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.genomic.gdc_realn.bam 9982348716 BAM genomic harmonized CPTAC3 68571263-2918-4bb6-9ebf-3e2cf212d696 899ac9458f6b90c33c22c47391d413ba {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.RNA-Seq.genomic.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.genomic.gdc_realn.bam 7386428404 BAM genomic harmonized CPTAC3 751a4f5c-fd7a-404f-a0bd-8e383bc2e358 ef54cb73508868fcd65874210337572f {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor"} -C3N-02688.RNA-Seq.S11_L003_R1.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R1_001.fastq.gz 3631020778 FASTQ S11_L003_R1 unaligned CPTAC3 c124c4a7-51e6-488f-a793-61b93eb0e118 a2fd520856f22ad7e887edefcfd5b979 {"aliquot_tag": "ALQ_19ccb263", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02688.RNA-Seq.S11_L003_R2.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R2_001.fastq.gz 3918387827 FASTQ S11_L003_R2 unaligned CPTAC3 1d7a49f1-cb96-4a37-8507-0447f00fd37f 3a8e78eab80321592656a81aa7687fd6 {"aliquot_tag": "ALQ_19ccb263", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02688.RNA-Seq.S1_L005_R1.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R1_001.fastq.gz 5068314421 FASTQ S1_L005_R1 unaligned CPTAC3 c7fc7a30-bc1e-4548-9c65-b57f1ccbc2f8 4698785e852794e60bbd246691f278ef {"aliquot_tag": "ALQ_5e6cc8b3", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.RNA-Seq.S1_L005_R2.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R2_001.fastq.gz 5446340967 FASTQ S1_L005_R2 unaligned CPTAC3 a753ba88-e961-4f03-ae0d-9ebc591fb1d3 e162e5125a60d6d9aa9203a83a04721a {"aliquot_tag": "ALQ_5e6cc8b3", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.RNA-Seq.transcriptome.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.transcriptome.gdc_realn.bam 12289175155 BAM transcriptome harmonized CPTAC3 052f51d1-4090-4f33-99e9-31f6c48596d6 b73440a62092ffd04819a9ff924bc44f {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.RNA-Seq.transcriptome.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.transcriptome.gdc_realn.bam 10379708663 BAM transcriptome harmonized CPTAC3 87150f33-c16c-4119-b4c6-899ca9174d37 068bdc9bd0176eda5650f44c11e1bd79 {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor"} -C3N-02688.WGS.N C3N-02688 LSCC WGS blood_normal CPT0312930002 CPT0312930002.WholeGenome.RP-2158.bam 24879180435 BAM aligned CPTAC3 19002fae-edee-4df2-90de-0f70b92d726d e00c75b0586af3b9e715e34583848336 {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02688.WGS.N.hg38 C3N-02688 LSCC WGS blood_normal CPT0312930002 7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wgs_gdc_realn.bam 73583032406 BAM harmonized CPTAC3 3874521a-91da-4fe6-aa99-5c5a25f74594 92d8df89072bbfe4381076b05b490fb1 {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02688.WGS.T C3N-02688 LSCC WGS tumor CPT0312910006 CPT0312910006.WholeGenome.RP-2158.bam 25085524970 BAM aligned CPTAC3 9915a0e2-3020-4e79-9fc2-ad6176c13c71 a791db082febbf86d9eb63f941ec7e1d {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor"} -C3N-02688.WGS.T.hg38 C3N-02688 LSCC WGS tumor CPT0312910006 841db2f4-f7e1-4d01-aba1-5f75df188097_wgs_gdc_realn.bam 70440118470 BAM harmonized CPTAC3 d3f651cf-a358-4262-bc5f-f8e85dd223ab ca0833137ccb711b6ab96585844b2afb {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor"} -C3N-02688.WXS.A C3N-02688 LSCC WXS tissue_normal CPT0312920006 CPT0312920006.WholeExome.RP-1303.bam 27906892479 BAM aligned CPTAC3 df121a2e-5197-4217-9bb7-ef46625c005e 9fedf0f3d44a9e68796d9e930bd703ec {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.WXS.A.hg38 C3N-02688 LSCC WXS tissue_normal CPT0312920006 ab150086-1f8c-4aca-a1c2-4a4f37c24d4e_wxs_gdc_realn.bam 38673434851 BAM harmonized CPTAC3 de9ce9d2-bd13-4c9d-a525-081ecbea3ee6 026b5404b2b53d5a454d919f8bd77d54 {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02688.WXS.N C3N-02688 LSCC WXS blood_normal CPT0312930002 CPT0312930002.WholeExome.RP-1303.bam 28283144336 BAM aligned CPTAC3 06808e58-a880-4754-9b27-fa25f072e2df 1ff8dd6db4a102baef15adc87e0b1c1e {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02688.WXS.N.hg38 C3N-02688 LSCC WXS blood_normal CPT0312930002 7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wxs_gdc_realn.bam 38190469620 BAM harmonized CPTAC3 09900c8f-9803-4870-845f-3c3d4079d5c7 080844bb985129f7003e727fa5ad4649 {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02688.WXS.T C3N-02688 LSCC WXS tumor CPT0312910006 CPT0312910006.WholeExome.RP-1303.bam 18877226352 BAM aligned CPTAC3 b9dacedb-73c3-454d-87c3-3fde9edc21de 741ec32ebc4f90ac0ae7c21756e18bb4 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor"} -C3N-02688.WXS.T.hg38 C3N-02688 LSCC WXS tumor CPT0312910006 841db2f4-f7e1-4d01-aba1-5f75df188097_wxs_gdc_realn.bam 26615928651 BAM harmonized CPTAC3 1765197d-1865-46bc-9919-72a12b9b57ea a0b3b2e1a3bbbdec3ae1aa8b2cd01b78 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor"} -C3N-02693.MethArray.Green.T C3N-02693 HNSCC Methylation_Array tumor CPT0226130006 203273200073_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f2cf96dc-de66-4d59-b395-a40b592b0b13 6ddbba3a88671f3ff893358bb6b985b1 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor"} -C3N-02693.MethArray.Red.T C3N-02693 HNSCC Methylation_Array tumor CPT0226130006 203273200073_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 69b7283c-e5e0-45b4-8638-a4bb026f1153 e5ac4acf10d81b6de0ee86a1b395e823 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor"} -C3N-02693.miRNA-Seq.S45_L004_R1.T C3N-02693 HNSCC miRNA-Seq tumor CPT0226130009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L004_R1_001.unaln.bam 164676057 BAM S45_L004_R1 unaligned CPTAC3 28f4bbe1-0a8d-4576-9db5-0d56d055f1ac 4e3fef2fedb109e1d20e9ed4bad655ae {"aliquot_tag": "ALQ_e2e454dd", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02693.miRNA-Seq.T.hg38 C3N-02693 HNSCC miRNA-Seq tumor CPT0226130009 155a4a50-aa68-4e0a-8993-986a2951ebc2_mirnaseq_gdc_realn.bam 188432018 BAM harmonized CPTAC3 b5121d1e-bef0-4b13-a48c-5d2d9508ac07 2cf4aabdd1db96a0f3af8f2faf7d62f0 {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.chimeric.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.chimeric.gdc_realn.bam 177560032 BAM chimeric harmonized CPTAC3 ad36e392-2643-4a20-b3c1-da30380327a6 ab36d46f8ed1a18eb58126fe6f0c37be {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.chimeric.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.chimeric.gdc_realn.bam 99384268 BAM chimeric harmonized CPTAC3 c3d56e1a-a21b-40da-9578-9bc4d4c4de11 16b2a442037b8976baae330e1f5a7e95 {"aliquot_tag": "ALQ_27f8b7f3", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.genomic.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.genomic.gdc_realn.bam 8040267838 BAM genomic harmonized CPTAC3 2cf13d19-b301-4a97-8264-59ee2c5716f5 9bc5d83e829991e964135984a9628603 {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.genomic.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.genomic.gdc_realn.bam 7697301844 BAM genomic harmonized CPTAC3 82a9dc65-077f-4a3c-9d60-a1542f6b30fc 2a0b13a1af12ff982faa86ce581d99a2 {"aliquot_tag": "ALQ_27f8b7f3", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.S48_R1.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R1_001.fastq.gz 4600491071 FASTQ S48_R1 unaligned CPTAC3 84f10a99-61c7-4dca-b385-cc6a9607bf63 433cad8d23755fae0c4c837094b0d8f5 {"aliquot_tag": "ALQ_27f8b7f3", "sample": "S48", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.S48_R2.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R2_001.fastq.gz 4838257828 FASTQ S48_R2 unaligned CPTAC3 dd5c5576-1205-4307-8461-6ab5077af79b 4e564c016206605b07034addf027cedc {"aliquot_tag": "ALQ_27f8b7f3", "sample": "S48", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.S4_L001_R1.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R1_001.fastq.gz 3871388385 FASTQ S4_L001_R1 unaligned CPTAC3 74e51ef8-289c-4bff-aafc-4ee240cfc193 d55c672d1d02e47fe1e9f1041dac0f0a {"aliquot_tag": "ALQ_e2e454dd", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.S4_L001_R2.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R2_001.fastq.gz 4226618980 FASTQ S4_L001_R2 unaligned CPTAC3 9b8d3278-927b-4b52-a93c-bfffa56c06ac af6456927b51bcc063ccf8a95e8a2bfd {"aliquot_tag": "ALQ_e2e454dd", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.transcriptome.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.transcriptome.gdc_realn.bam 10307178689 BAM transcriptome harmonized CPTAC3 3951e3ed-37cf-4108-9291-597b5494b7ea 658640a4c77d1bd7b6c333e102bc932a {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor"} -C3N-02693.RNA-Seq.transcriptome.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.transcriptome.gdc_realn.bam 5135834467 BAM transcriptome harmonized CPTAC3 c7533ffa-145f-40ee-bcd2-89f304c500f7 1a6669497d09f9b59b67c966b7b6bd8b {"aliquot_tag": "ALQ_27f8b7f3", "gdc_sample_type": "Primary Tumor"} -C3N-02693.WGS.N C3N-02693 HNSCC WGS blood_normal CPT0226170002 CPT0226170002.WholeGenome.RP-1303.bam 62103375088 BAM aligned CPTAC3 00226cb7-c3be-49dc-bd18-5b0c77d6ef9e 92f8ff0122dc40ec41e075344415724e {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-02693.WGS.N.hg38 C3N-02693 HNSCC WGS blood_normal CPT0226170002 d1579373-d5d8-47b8-9623-c7f97cb20030_wgs_gdc_realn.bam 91781549091 BAM harmonized CPTAC3 fdf282ee-dd34-4bc8-adff-78d331b16b68 10e787e6d0abae2166ba3d3b51c4dcfd {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-02693.WGS.T C3N-02693 HNSCC WGS tumor CPT0226130006 CPT0226130006.WholeGenome.RP-1303.bam 84613827791 BAM aligned CPTAC3 b53bbc0f-3ebb-43fa-89c8-2b82b67c2265 38979758c694d4eaffc3e7d035a911a1 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor"} -C3N-02693.WGS.T.hg38 C3N-02693 HNSCC WGS tumor CPT0226130006 efa1b208-4f4a-4d5b-aeb9-19531c78de54_wgs_gdc_realn.bam 128823088727 BAM harmonized CPTAC3 a7c8ad6e-8044-4d1e-9a8a-3eca35d871b1 090a45d4c82e11a034884bff23781198 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor"} -C3N-02693.WXS.N C3N-02693 HNSCC WXS blood_normal CPT0226170002 CPT0226170002.WholeExome.RP-1303.bam 41548016707 BAM aligned CPTAC3 8e8f416d-db5b-48ee-a2a9-39e7fa843492 504a0d624808448f13460a459c75d541 {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-02693.WXS.N.hg38 C3N-02693 HNSCC WXS blood_normal CPT0226170002 d1579373-d5d8-47b8-9623-c7f97cb20030_wxs_gdc_realn.bam 57061643128 BAM harmonized CPTAC3 5e32bf3d-4e7d-495c-883a-8a503a185767 b26e00eca1da697c0705b372f7e51168 {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal"} -C3N-02693.WXS.T C3N-02693 HNSCC WXS tumor CPT0226130006 CPT0226130006.WholeExome.RP-1303.bam 21804215160 BAM aligned CPTAC3 d234a3fc-83e7-44b7-9f39-68a0567683eb d5a80d8a5084e90cae58ea659bdb46db {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor"} -C3N-02693.WXS.T.hg38 C3N-02693 HNSCC WXS tumor CPT0226130006 efa1b208-4f4a-4d5b-aeb9-19531c78de54_wxs_gdc_realn.bam 30309725819 BAM harmonized CPTAC3 6c2615ee-52cb-4204-bcdc-d395ecaa0e59 19a9fd589dc0e98b86cd519ae9fb328c {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor"} -C3N-02694.MethArray.Green.T C3N-02694 HNSCC Methylation_Array tumor CPT0244890010 203219650096_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 831e5e9d-6158-4995-80b2-92ea56cdf934 015a8a7019228d67afe54300b3e7c23f {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor"} -C3N-02694.MethArray.Red.T C3N-02694 HNSCC Methylation_Array tumor CPT0244890010 203219650096_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 34b074da-3470-4cd1-9356-4aa732da79ca fd64c446709aaa12b6bca8b5537c638e {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor"} -C3N-02694.miRNA-Seq.S16_L005_R1.T C3N-02694 HNSCC miRNA-Seq tumor CPT0244890007 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L005_R1_001.unaln.bam 206425100 BAM S16_L005_R1 unaligned CPTAC3 363b4fcc-a43e-48bc-91b6-eb522a53145a 9ab570bcee0e4c9757d5e6e12a7c7c25 {"aliquot_tag": "ALQ_3913281d", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02694.miRNA-Seq.T.hg38 C3N-02694 HNSCC miRNA-Seq tumor CPT0244890007 861025db-c76e-4fa8-823f-bd6ab238146b_mirnaseq_gdc_realn.bam 231489108 BAM harmonized CPTAC3 32c3524a-e00f-4c66-b6e5-7654a7989a11 d0d470013f29163084b23c047fb85670 {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.chimeric.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.chimeric.gdc_realn.bam 44366750 BAM chimeric harmonized CPTAC3 174cb6dc-7bf1-4c9d-b6fe-8213f1128202 421bd9b70a021543286b7fadcd0c7705 {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.chimeric.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.chimeric.gdc_realn.bam 221097051 BAM chimeric harmonized CPTAC3 5bfdf9b2-bf3f-45fc-9178-4c43a721e672 9adc842c3ce731169cbf2d037a77c300 {"aliquot_tag": "ALQ_2691c069", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.genomic.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.genomic.gdc_realn.bam 9642664716 BAM genomic harmonized CPTAC3 1d7fa6a0-98a0-4b55-8e1f-093a249e8c06 8c298f58b639b0c9ff2278222b1ab80a {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.genomic.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.genomic.gdc_realn.bam 10165314798 BAM genomic harmonized CPTAC3 ba8b422e-584b-44db-9e9c-7707ab72f1e6 72b4b6561356ee122c9c92e2d1ff6d42 {"aliquot_tag": "ALQ_2691c069", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.S28_L006_R1.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R1_001.fastq.gz 4412189824 FASTQ S28_L006_R1 unaligned CPTAC3 6f6a88ca-3ce8-48d3-bc9c-3310f29ef266 33665d4dbc96d0607f309e78c721b6bf {"aliquot_tag": "ALQ_3913281d", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.S28_L006_R2.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R2_001.fastq.gz 4977946401 FASTQ S28_L006_R2 unaligned CPTAC3 61d55a69-ceb4-46cd-8fae-36e7df6467d2 d240d4d92807aa25000d26c3b4f8c0a5 {"aliquot_tag": "ALQ_3913281d", "sample": "S28", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.S7_R1.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R1_001.fastq.gz 6167749121 FASTQ S7_R1 unaligned CPTAC3 02fb8999-d5d4-42c2-a7de-ebdbb1506fca f55a108ea2463164c8b09d75b1b62d58 {"aliquot_tag": "ALQ_2691c069", "sample": "S7", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.S7_R2.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R2_001.fastq.gz 6280012353 FASTQ S7_R2 unaligned CPTAC3 cd666a5b-e253-4a56-994a-b87b88765d66 988623d606e9c0bd66adf595b3bf94dd {"aliquot_tag": "ALQ_2691c069", "sample": "S7", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.transcriptome.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.transcriptome.gdc_realn.bam 12502426721 BAM transcriptome harmonized CPTAC3 3bc315ec-df6c-4813-89f6-3a13aa9f18d5 856afe4b483d4e7ba0822c2d29215ff9 {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor"} -C3N-02694.RNA-Seq.transcriptome.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.transcriptome.gdc_realn.bam 5419271889 BAM transcriptome harmonized CPTAC3 2705950e-a145-4b04-bb2c-0394985e64d8 2236f09e0e285c55370f1f691cfbfce7 {"aliquot_tag": "ALQ_2691c069", "gdc_sample_type": "Primary Tumor"} -C3N-02694.WGS.N C3N-02694 HNSCC WGS blood_normal CPT0244930002 CPT0244930002.WholeGenome.RP-1303.bam 93171397447 BAM aligned CPTAC3 10aae5db-058f-4c0f-9d1d-752d465a0650 074c2e397743b5069ae4e1e44b125942 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal"} -C3N-02694.WGS.N.hg38 C3N-02694 HNSCC WGS blood_normal CPT0244930002 5032a164-9956-4fa5-acea-46f50f7eb1dd_wgs_gdc_realn.bam 136426212143 BAM harmonized CPTAC3 c8377306-0b3c-4195-b67e-32365368c6e9 b2d7c7a3d299caf39c097729de381d86 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal"} -C3N-02694.WGS.T C3N-02694 HNSCC WGS tumor CPT0244890010 CPT0244890010.WholeGenome.RP-1303.bam 57056337315 BAM aligned CPTAC3 83bf11f5-fd3e-4243-bdc2-5353e0bae0ab c538dcea2d72f029793d594fdc832071 {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor"} -C3N-02694.WGS.T.hg38 C3N-02694 HNSCC WGS tumor CPT0244890010 cd42de5b-0725-4112-848f-99b74c1e56ee_wgs_gdc_realn.bam 84381117789 BAM harmonized CPTAC3 67e5a326-497a-4b94-b331-07d84f8bd362 b836abe78515cff17f86b176ed6352f5 {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor"} -C3N-02694.WXS.N C3N-02694 HNSCC WXS blood_normal CPT0244930002 CPT0244930002.WholeExome.RP-1303.bam 26215752749 BAM aligned CPTAC3 d8c7cf8e-36cc-48b7-b01c-37d8e19c583f 16ba700fa6a867ec28135d241bac3572 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal"} -C3N-02694.WXS.N.hg38 C3N-02694 HNSCC WXS blood_normal CPT0244930002 5032a164-9956-4fa5-acea-46f50f7eb1dd_wxs_gdc_realn.bam 35451596856 BAM harmonized CPTAC3 4aa080b1-72aa-468b-b377-469f764caeed c95c58e9dabf65ae7c6f849d301f97e0 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal"} -C3N-02694.WXS.T C3N-02694 HNSCC WXS tumor CPT0244890010 CPT0244890010.WholeExome.RP-1303.bam 28428997616 BAM aligned CPTAC3 c7e114b3-9c99-45de-baed-44740afdf5b5 02d78bce263f4f0690f1ea15bee19b38 {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor"} -C3N-02694.WXS.T.hg38 C3N-02694 HNSCC WXS tumor CPT0244890010 cd42de5b-0725-4112-848f-99b74c1e56ee_wxs_gdc_realn.bam 38534405227 BAM harmonized CPTAC3 2fc51576-0582-4748-922e-fd45317947d0 a68d93e2b3b5f318d0b2e68964e319ca {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor"} -C3N-02695.MethArray.Green.T C3N-02695 HNSCC Methylation_Array tumor CPT0244940010 203271740156_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 9c287c03-1da0-4a38-be11-b8ebf0d149e2 554bbf0fad177a18478a85aa13319964 {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor"} -C3N-02695.MethArray.Red.T C3N-02695 HNSCC Methylation_Array tumor CPT0244940010 203271740156_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 179061df-16f3-42ea-bb14-8451abfb6b40 5e9fd9af9de4fd7de29e55fb5ae0e533 {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor"} -C3N-02695.miRNA-Seq.S17_L005_R1.T C3N-02695 HNSCC miRNA-Seq tumor CPT0244940007 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L005_R1_001.unaln.bam 165022965 BAM S17_L005_R1 unaligned CPTAC3 33a8747f-d204-4077-9dd8-1a66a08d3718 471795e6a03d93e9f1ded1a23d39339f {"aliquot_tag": "ALQ_adf3f09", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02695.miRNA-Seq.T.hg38 C3N-02695 HNSCC miRNA-Seq tumor CPT0244940007 ed28d012-5e4d-4e77-a8b1-32daa1992211_mirnaseq_gdc_realn.bam 182293281 BAM harmonized CPTAC3 67bf1c52-f6b2-4a5b-973f-3997ca806e43 85defd3c5a1816cdfa60a5ad0de6dc42 {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.chimeric.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.chimeric.gdc_realn.bam 39583534 BAM chimeric harmonized CPTAC3 8ff5777c-666f-49ee-9b2a-910c646b5e4e 35b063e987dfb0b9413d5afe4f50ec4b {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.chimeric.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.chimeric.gdc_realn.bam 22780574 BAM chimeric harmonized CPTAC3 825e9b9c-b47b-40b3-a953-b89707aced7c de274a3da1d576382bd28ef40764298a {"aliquot_tag": "ALQ_a4c157b8", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.genomic.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.genomic.gdc_realn.bam 10172193440 BAM genomic harmonized CPTAC3 b9bad19b-d11e-4701-ba53-1c4a40e60c80 a91196bb1dbf0265ed221e468c15a9db {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.genomic.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.genomic.gdc_realn.bam 19181571666 BAM genomic harmonized CPTAC3 c9bef1fb-65cc-48be-b028-63571f7d144f 2e157dbd30a4e0db740c637633123531 {"aliquot_tag": "ALQ_a4c157b8", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.S27_R1.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R1_001.fastq.gz 3935541562 FASTQ S27_R1 unaligned CPTAC3 8cf5b98a-33d5-4963-b543-4cfccab04b63 66aba162234355d9686083a43ab5ca9b {"aliquot_tag": "ALQ_a4c157b8", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.S27_R2.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R2_001.fastq.gz 3789177374 FASTQ S27_R2 unaligned CPTAC3 51cc4873-048b-4623-9115-f64abec58f85 f1b32accaa8e4c219f559dbccad82072 {"aliquot_tag": "ALQ_a4c157b8", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.S29_L007_R1.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R1_001.fastq.gz 4558496841 FASTQ S29_L007_R1 unaligned CPTAC3 f2ba1302-ceab-42a5-b7e7-01023c19cb88 369274d947660f1edcde3591cc0e08b4 {"aliquot_tag": "ALQ_adf3f09", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.S29_L007_R2.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R2_001.fastq.gz 5075426698 FASTQ S29_L007_R2 unaligned CPTAC3 6137e440-7a72-42e9-adf9-62473175c411 c53d2b82a30e75fd0cef43c959281a53 {"aliquot_tag": "ALQ_adf3f09", "sample": "S29", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.transcriptome.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.transcriptome.gdc_realn.bam 14225142264 BAM transcriptome harmonized CPTAC3 41776784-6f55-4995-96f8-1e22bb5a8d1f f83f4a15b517030e2fc54a47f9e85ad6 {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor"} -C3N-02695.RNA-Seq.transcriptome.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.transcriptome.gdc_realn.bam 3304748993 BAM transcriptome harmonized CPTAC3 a8a3d354-0d44-4b81-8471-a6fa9683ecc7 9c196d4eb46575f1f2fa4c3a3df1c962 {"aliquot_tag": "ALQ_a4c157b8", "gdc_sample_type": "Primary Tumor"} -C3N-02695.WGS.N C3N-02695 HNSCC WGS blood_normal CPT0245000002 CPT0245000002.WholeGenome.RP-1303.bam 55578416635 BAM aligned CPTAC3 675ef008-63cb-4c13-933f-a46efe0d1c85 99f5b52cbf1007d79ba4e6e83f08d47b {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02695.WGS.N.hg38 C3N-02695 HNSCC WGS blood_normal CPT0245000002 280e96da-7858-45c8-9e2b-1cd59b3fa4a5_wgs_gdc_realn.bam 81606449915 BAM harmonized CPTAC3 abe6c00b-6d93-454a-b545-0b39ee75b586 43478cc0434bc03959f524e42ff536a5 {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02695.WGS.T C3N-02695 HNSCC WGS tumor CPT0244940010 CPT0244940010.WholeGenome.RP-1303.bam 90185006269 BAM aligned CPTAC3 d82d6503-897e-4691-9585-bf1080dc7e86 1f110f2babc0e13847a8a31e67ff51bc {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor"} -C3N-02695.WGS.T.hg38 C3N-02695 HNSCC WGS tumor CPT0244940010 ed4abe3e-4046-4eb6-9760-036fd53f3af5_wgs_gdc_realn.bam 133717253558 BAM harmonized CPTAC3 62682f81-9ab9-4307-bff5-831daabd785c 15f111c22f8f5d7085142a2cff8a767c {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor"} -C3N-02695.WXS.N C3N-02695 HNSCC WXS blood_normal CPT0245000002 CPT0245000002.WholeExome.RP-1303.bam 24508910216 BAM aligned CPTAC3 a005948d-77d6-4c1b-a0ce-94d3d8222a35 1518de085ea86b305c39331622b62e0f {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02695.WXS.N.hg38 C3N-02695 HNSCC WXS blood_normal CPT0245000002 280e96da-7858-45c8-9e2b-1cd59b3fa4a5_wxs_gdc_realn.bam 33321790265 BAM harmonized CPTAC3 254a5b1d-3581-4940-a0a6-1f9d0feb4cc6 7eef1e4345ef339c1915948d7b22bb4f {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02695.WXS.T C3N-02695 HNSCC WXS tumor CPT0244940010 CPT0244940010.WholeExome.RP-1303.bam 48153539053 BAM aligned CPTAC3 2d58c04b-135a-46f5-8e07-78cd8c22e4df 7743fb59f788c3dc1d6293581c25268e {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor"} -C3N-02695.WXS.T.hg38 C3N-02695 HNSCC WXS tumor CPT0244940010 ed4abe3e-4046-4eb6-9760-036fd53f3af5_wxs_gdc_realn.bam 65755098091 BAM harmonized CPTAC3 652a39ee-ec5d-4f2d-9344-ba1f77d6ae74 bbd99ea38188af28a1671bc2073cb4e6 {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor"} -C3N-02696.ANN_35d1d74b.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.chimeric.gdc_realn.bam 527897923 BAM chimeric harmonized CPTAC3 a9af1c2e-158b-4a48-96b1-9bf297c50706 efe76d5d0a8a8a78bca521d98761be4f {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.ANN_35d1d74b.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.genomic.gdc_realn.bam 12821998307 BAM genomic harmonized CPTAC3 ee143b84-6464-4788-b4fd-970f92bcba55 704e7f6e94de63b4d76ca1dfcf15144a {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.ANN_35d1d74b.RNA-Seq.S2_L005_R1.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R1_001.fastq.gz 5395654595 FASTQ S2_L005_R1 unaligned CPTAC3 d21f8288-6844-4693-9f81-781a52b7c925 19b83578d3544646e37a0408704a5974 {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02696.ANN_35d1d74b.RNA-Seq.S2_L005_R2.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R2_001.fastq.gz 6089753546 FASTQ S2_L005_R2 unaligned CPTAC3 6657cbe8-77b7-4d68-a44a-be781736d0a8 50ae117fc3ad64a517528d924a5287d3 {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02696.ANN_35d1d74b.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.transcriptome.gdc_realn.bam 14240909465 BAM transcriptome harmonized CPTAC3 1b3af2b8-1543-4065-8858-c292dd1118bb dd2047b7cb2fc326c7b584e5083c57f4 {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_2737e1d9.RNA-Seq.chimeric.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.chimeric.gdc_realn.bam 533779278 BAM chimeric harmonized CPTAC3 50c0f55b-cf5f-4a84-9304-31a6537b5a15 376b31af19c7af8ae63cd88a13d7098c {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_2737e1d9.RNA-Seq.genomic.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.genomic.gdc_realn.bam 8239230714 BAM genomic harmonized CPTAC3 bb3014e0-ada9-4ae0-82a3-185a6c1576be 2e724f165d7349561f8ae83f7e5d2fce {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_2737e1d9.RNA-Seq.S14_L005_R1.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R1_001.fastq.gz 3879434642 FASTQ S14_L005_R1 unaligned CPTAC3 fbccd334-cb51-4a83-94cd-ccae217f563d 17bb63ef743a23902e9fbf6efc2a559e {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_2737e1d9.RNA-Seq.S14_L005_R2.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R2_001.fastq.gz 4168570690 FASTQ S14_L005_R2 unaligned CPTAC3 2c98d1d4-8184-436b-a163-4d7ceb2b71d2 6c9e378cf5eaccf7bca21ff9f989c190 {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_2737e1d9.RNA-Seq.transcriptome.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.transcriptome.gdc_realn.bam 9498415514 BAM transcriptome harmonized CPTAC3 642b28d8-e329-4f38-8bc9-3d7a49922d42 bcf8749ee8098b4068352b308b674f1f {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_2ccae60a.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.chimeric.gdc_realn.bam 297118867 BAM chimeric harmonized CPTAC3 1609d96f-62fb-4c35-9128-7f72df84bb4d 84ed9795df7f794cf630a9787c11b4a2 {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_2ccae60a.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.genomic.gdc_realn.bam 12426252115 BAM genomic harmonized CPTAC3 7518b12c-f457-4759-9f59-a6c2aa3a93bd c0be068ebd656d6f6a2814d7e04b65d3 {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_2ccae60a.RNA-Seq.S9_L003_R1.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 5674534162 FASTQ S9_L003_R1 unaligned CPTAC3 2d61c60e-e794-459f-84d1-ef96c6629ff3 5062fa2c0b53926c19bb6a19f9ed1a5f {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_2ccae60a.RNA-Seq.S9_L003_R2.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 6239096360 FASTQ S9_L003_R2 unaligned CPTAC3 f592aca1-a466-4c6b-a2c9-91baf38ff58c 1930a05fa433f714f6ff7beafe4f8f5e {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_2ccae60a.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.transcriptome.gdc_realn.bam 13294874592 BAM transcriptome harmonized CPTAC3 86b78d1c-656c-43d5-819c-979dc6fca912 e7de4d70ae9bbe293d7a9d16ef0d327c {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_527b9ab7.WXS.T C3N-02696 PDA WXS tumor CPT0187720034 CPT0187720034.WholeExome.RP-1303.bam 26525491459 BAM aligned CPTAC3 0e1bf386-d80a-4099-9743-7e5c7416d54a 54c28f3934b6466b81885d01e2a4fc44 {"aliquot_tag": "DUP_527b9ab7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_527b9ab7.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720034 3fb95744-5c41-4471-9df3-546ee2b8e71e_wxs_gdc_realn.bam 36400384902 BAM harmonized CPTAC3 ea05ae7a-d363-4851-88ee-4711b46ddecf 0d86f5feac096bf4193d0178c3785307 {"aliquot_tag": "DUP_527b9ab7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_58d5e331.WXS.N C3N-02696 PDA WXS blood_normal CPT0187770002 CPT0187770002.WholeExome.RP-1303.bam 30426628672 BAM aligned CPTAC3 2100a057-46d9-405e-a8d1-28fd7e79074b d2e40c042d5fd9932975e453c7d52ab3 {"aliquot_tag": "DUP_58d5e331", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02696.DUP_58d5e331.WXS.N.hg38 C3N-02696 PDA WXS blood_normal CPT0187770002 cd44d8e9-d1db-43ee-854d-6482cc2cecc3_wxs_gdc_realn.bam 41477207661 BAM harmonized CPTAC3 7cfa912c-2445-4423-9113-4967da503f4e d72036774f71d8f7ec248faf4b4e76a4 {"aliquot_tag": "DUP_58d5e331", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02696.DUP_bb183f82.WXS.T C3N-02696 PDA WXS tumor CPT0187720032 CPT0187720032.WholeExome.RP-1303.bam 26275991837 BAM aligned CPTAC3 b85cc756-a350-4145-8661-76900a626368 9fe25406f53d5d398a47049ca975b627 {"aliquot_tag": "DUP_bb183f82", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_bb183f82.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720032 5c1e57f9-b763-4096-8efe-ad4938f28f28_wxs_gdc_realn.bam 37859899802 BAM harmonized CPTAC3 e19f85e5-6493-4350-8805-594adbee928c c5b98435f5b460b82c2afbc19bb2862a {"aliquot_tag": "DUP_bb183f82", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_be3eb063.RNA-Seq.chimeric.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.chimeric.gdc_realn.bam 153590444 BAM chimeric harmonized CPTAC3 63956fcc-723b-45d1-9fac-d45b52ddf737 b08e6956acf263a9ed56f89912e60845 {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_be3eb063.RNA-Seq.genomic.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.genomic.gdc_realn.bam 6564071542 BAM genomic harmonized CPTAC3 0e70657d-b298-4401-a950-81125c39f6b9 bd607053f1211d18b6e2afee833aa4fd {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_be3eb063.RNA-Seq.S11_L003_R1.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3150886063 FASTQ S11_L003_R1 unaligned CPTAC3 179e310a-ac0b-4117-acc3-2348212cf312 91a4ba94ffe1d7f4a363651ef33bd2db {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_be3eb063.RNA-Seq.S11_L003_R2.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3377145906 FASTQ S11_L003_R2 unaligned CPTAC3 edb35be5-33e0-45ba-b587-b4a5b62b96d4 984fcf990bb017f4e2a87fac9603934c {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_be3eb063.RNA-Seq.transcriptome.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.transcriptome.gdc_realn.bam 9617546428 BAM transcriptome harmonized CPTAC3 f25f34aa-e85f-44c9-be6f-94327e62db90 4af403651a18a72191c6b96c1096b34b {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02696.DUP_cc1f0f14.WXS.T C3N-02696 PDA WXS tumor CPT0187720033 CPT0187720033.WholeExome.RP-1303.bam 24274340836 BAM aligned CPTAC3 7bf03c0c-2177-448a-a58c-9d0f8fe5ab32 0a8e39c5ffd4092f7fe840453089c76f {"aliquot_tag": "DUP_cc1f0f14", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02696.DUP_cc1f0f14.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720033 4550480f-f067-49e8-b363-a6ef86e7f3a0_wxs_gdc_realn.bam 33713968747 BAM harmonized CPTAC3 efcfaeab-730f-4a73-abc6-997b95dceaed 1bc70a8881e4ee9ed76ac1b395560bec {"aliquot_tag": "DUP_cc1f0f14", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02697.MethArray.Green.T C3N-02697 PDA Methylation_Array tumor CPT0187780007 203561620153_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4814ffc2-1abf-44ca-96a1-10fcb0852a1a 6be61a0ee3cfbd0c2805600bfa5d2ff3 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor"} -C3N-02697.MethArray.Red.T C3N-02697 PDA Methylation_Array tumor CPT0187780007 203561620153_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 12bfe7b1-a658-47c6-98f3-625f27ad343d cfdea2962c4bce127a72aa5f76aaa566 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor"} -C3N-02697.miRNA-Seq.S2_L004_R1.T C3N-02697 PDA miRNA-Seq tumor CPT0187780010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGAGC_S2_L004_R1_001.unaln.bam 155578609 BAM S2_L004_R1 unaligned CPTAC3 e70a32ad-5c49-4800-8705-82ed3489cc87 5192a8a730599bcce381c97ea0098e31 {"aliquot_tag": "ALQ_2d90248d", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02697.miRNA-Seq.T.hg38 C3N-02697 PDA miRNA-Seq tumor CPT0187780010 92678b1a-17a6-4e15-88ea-f2ebd3f1a705_mirnaseq_gdc_realn.bam 175218702 BAM harmonized CPTAC3 dd991044-a44e-42d3-b3e1-b7f7aa9acf05 0bd9538a464325ca8f78004d12cf75db {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor"} -C3N-02697.RNA-Seq.chimeric.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.chimeric.gdc_realn.bam 38129331 BAM chimeric harmonized CPTAC3 c95cde69-587e-4067-a307-0dbe044d4791 77b89f7cc0a330d383ac9ae85c014a26 {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor"} -C3N-02697.RNA-Seq.genomic.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.genomic.gdc_realn.bam 9109969658 BAM genomic harmonized CPTAC3 432d2d4c-c62e-466d-87f4-e5b5ed65c173 4cb7409e1659eee6364d9c944128bc31 {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor"} -C3N-02697.RNA-Seq.S10_L003_R1.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 4039843803 FASTQ S10_L003_R1 unaligned CPTAC3 3af97fc0-6065-4f6a-8721-134c0800f159 e48b2857aa202cb163ab51361041beeb {"aliquot_tag": "ALQ_2d90248d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02697.RNA-Seq.S10_L003_R2.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4601498429 FASTQ S10_L003_R2 unaligned CPTAC3 d2001364-38f0-4745-963b-acefe25a8f22 aa0f91d91eb1cb11008020199581d39b {"aliquot_tag": "ALQ_2d90248d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02697.RNA-Seq.transcriptome.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.transcriptome.gdc_realn.bam 11255074817 BAM transcriptome harmonized CPTAC3 ecebd7af-834e-43be-9645-b05e397c0fa2 b9eae79ba195d0fe7b6463538f418b69 {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor"} -C3N-02697.WGS.N C3N-02697 PDA WGS blood_normal CPT0187800002 CPT0187800002.WholeGenome.RP-1303.bam 71530873228 BAM aligned CPTAC3 160c6ba2-2afb-4c8a-a870-8a4ff5ce72ad e67abb62145a1431ffc4e3ed55efee56 {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02697.WGS.N.hg38 C3N-02697 PDA WGS blood_normal CPT0187800002 f93936bb-8321-4662-84e8-04ca6bae8841_wgs_gdc_realn.bam 105102884811 BAM harmonized CPTAC3 6a1a0705-71cf-471f-a698-25110c1e7665 960523cec50fa7c8f2eed9f6c40b3f40 {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02697.WGS.T C3N-02697 PDA WGS tumor CPT0187780007 CPT0187780007.WholeGenome.RP-1303.bam 135293604911 BAM aligned CPTAC3 a8afd049-ab10-483d-b862-b96e68f048f8 682d0cc9dc86200f78999c062f9f21bb {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor"} -C3N-02697.WGS.T.hg38 C3N-02697 PDA WGS tumor CPT0187780007 e497d157-0722-42e7-b1aa-63f7d6eb4806_wgs_gdc_realn.bam 197259756960 BAM harmonized CPTAC3 cde34be4-e9fc-4960-bf7c-cda7d9f0a5ff b33af6cea26e5a3e93212dd7ab7ae000 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor"} -C3N-02697.WXS.N C3N-02697 PDA WXS blood_normal CPT0187800002 CPT0187800002.WholeExome.RP-1303.bam 24802549493 BAM aligned CPTAC3 288393cb-0234-4a45-9500-b17ba2bcb007 a9837c033cf64cfb465d8336c54971ea {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02697.WXS.N.hg38 C3N-02697 PDA WXS blood_normal CPT0187800002 f93936bb-8321-4662-84e8-04ca6bae8841_wxs_gdc_realn.bam 33379723136 BAM harmonized CPTAC3 0a090199-b5fe-44f0-96b2-e0fd5a5c72ef 1ece8dea25a654e43d9eaef3e37ce073 {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal"} -C3N-02697.WXS.T C3N-02697 PDA WXS tumor CPT0187780007 CPT0187780007.WholeExome.RP-1303.bam 51248002336 BAM aligned CPTAC3 c41d6d48-cc1a-4293-97ae-8bd8569cbc42 241d1bb035a8f2b5d1a2490da41f4ef0 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor"} -C3N-02697.WXS.T.hg38 C3N-02697 PDA WXS tumor CPT0187780007 e497d157-0722-42e7-b1aa-63f7d6eb4806_wxs_gdc_realn.bam 70226509934 BAM harmonized CPTAC3 0f16e270-7cd9-4225-aeba-8cba1cf02e3b dbd6c61cea8cd403b6832fe2e4080240 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor"} -C3N-02700.MethArray.Green.T C3N-02700 HNSCC Methylation_Array tumor CPT0177010006 203219650047_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7378fbc8-e1ab-44b7-83ba-993598d67df5 c745155f7261d8c0c6f5a7f72e5bdd00 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor"} -C3N-02700.MethArray.Red.T C3N-02700 HNSCC Methylation_Array tumor CPT0177010006 203219650047_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 4519e8e1-bc1b-4b71-848e-c7afe06593dd 4edacf67087cfbcfd03879b73e7c3463 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor"} -C3N-02700.miRNA-Seq.S7_L001_R1.T C3N-02700 HNSCC miRNA-Seq tumor CPT0177010009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L001_R1_001.unaln.bam 243249333 BAM S7_L001_R1 unaligned CPTAC3 9bea4471-5f0c-4ef5-b9a6-901d9b978cd2 918fd72ba5077e38e970a5fe983757bf {"aliquot_tag": "ALQ_8462ed0d", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02700.miRNA-Seq.T.hg38 C3N-02700 HNSCC miRNA-Seq tumor CPT0177010009 b2f73d1f-bebd-472f-86b7-fd8d26a6c74a_mirnaseq_gdc_realn.bam 267872063 BAM harmonized CPTAC3 07ec6e4e-5fc3-46e8-9f68-dd8dd9142a53 f0864f084110fa98810830e3fef03499 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.chimeric.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.chimeric.gdc_realn.bam 333065920 BAM chimeric harmonized CPTAC3 9ec88ca7-b26b-49f5-b7da-ce65e8f53606 a324d5f5a47901ebcf5e6d62a1963cf6 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.chimeric.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.chimeric.gdc_realn.bam 2087327 BAM chimeric harmonized CPTAC3 1ec1e2e3-33a3-4aed-99a9-2f0f3c267f38 bfdb0855dcd55e458f30d9bf18b1f6ac {"aliquot_tag": "ALQ_6622f2be", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.genomic.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.genomic.gdc_realn.bam 8844652422 BAM genomic harmonized CPTAC3 630a9898-48d9-432b-b8c7-e231ebef5960 0a6765f0f09a6af6f39c4cab08a2b187 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.genomic.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.genomic.gdc_realn.bam 5824664527 BAM genomic harmonized CPTAC3 ce425d5c-ab86-4a42-bf5e-09c12d9478ab 7222eeeaab883a6624605ce07fba1278 {"aliquot_tag": "ALQ_6622f2be", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.S16_R1.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R1_001.fastq.gz 2637938442 FASTQ S16_R1 unaligned CPTAC3 bffb41d6-19e2-43c6-a0aa-885b8e15bcb5 948bc6b1d7cff07590f8a0d45c53cba3 {"aliquot_tag": "ALQ_6622f2be", "sample": "S16", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.S16_R2.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R2_001.fastq.gz 2943138635 FASTQ S16_R2 unaligned CPTAC3 fb953b37-fc0e-49ca-8a6a-07a3b0ef8905 3548b33cebce9c98657319af78b239b3 {"aliquot_tag": "ALQ_6622f2be", "sample": "S16", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.S8_L002_R1.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4062433781 FASTQ S8_L002_R1 unaligned CPTAC3 319a077c-3031-4fbe-9958-4577b5919304 8c61dfa9b7b9b335fa27707024bc632c {"aliquot_tag": "ALQ_8462ed0d", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.S8_L002_R2.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4516828840 FASTQ S8_L002_R2 unaligned CPTAC3 01f59131-90c2-4ae2-bbb2-e18463f8577c 4f4eaaf4872e6071607927d8f4c2b36e {"aliquot_tag": "ALQ_8462ed0d", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.transcriptome.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.transcriptome.gdc_realn.bam 10867273856 BAM transcriptome harmonized CPTAC3 45d525d8-4cb6-448c-b28d-8c4f94fc145e ff3e2c1b7422cf019545823b806d1512 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor"} -C3N-02700.RNA-Seq.transcriptome.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.transcriptome.gdc_realn.bam 5317413113 BAM transcriptome harmonized CPTAC3 c47e3231-da5f-4bab-9853-f123d68a236e c0ec2f3239574dc7ac8455b4faa00387 {"aliquot_tag": "ALQ_6622f2be", "gdc_sample_type": "Primary Tumor"} -C3N-02700.WGS.N C3N-02700 HNSCC WGS blood_normal CPT0177130002 CPT0177130002.WholeGenome.RP-1303.bam 65959456085 BAM aligned CPTAC3 7b064650-af3e-42da-b0df-734ccc4990c3 dbc6eb0a1e9498059dda415f933c8d9f {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal"} -C3N-02700.WGS.N.hg38 C3N-02700 HNSCC WGS blood_normal CPT0177130002 c7ba6d5b-3412-4e38-aedc-4a55db1c2449_wgs_gdc_realn.bam 96217644096 BAM harmonized CPTAC3 aeaf78a2-50fd-4520-adac-0f17264cfd93 08027a10e2678394aa3777cdb1320728 {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal"} -C3N-02700.WGS.T C3N-02700 HNSCC WGS tumor CPT0177010006 CPT0177010006.WholeGenome.RP-1303.bam 89825070533 BAM aligned CPTAC3 d62952b7-0b11-4361-a619-9711ee873d3a 616824dd0333afa4bd2ae8f4a361afa8 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor"} -C3N-02700.WGS.T.hg38 C3N-02700 HNSCC WGS tumor CPT0177010006 fbabe3a3-fe14-4f2c-843c-6133204516cb_wgs_gdc_realn.bam 131210418611 BAM harmonized CPTAC3 ca5bf1c0-8f3a-4e70-9047-50bef043d3ae e2a342d04b3db9f0f7835d6bc300bf7e {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor"} -C3N-02700.WXS.N C3N-02700 HNSCC WXS blood_normal CPT0177130002 CPT0177130002.WholeExome.RP-1303.bam 27220670297 BAM aligned CPTAC3 8034789f-4323-44b3-8980-f847ed90a7fe 9fa2f33d67d88aa746f1c4bba6dc51a5 {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal"} -C3N-02700.WXS.N.hg38 C3N-02700 HNSCC WXS blood_normal CPT0177130002 c7ba6d5b-3412-4e38-aedc-4a55db1c2449_wxs_gdc_realn.bam 36528706450 BAM harmonized CPTAC3 78725765-d4f7-41d2-ade3-2f3c696184ae 5dffd2e89cb7cd1a89312823d648faf8 {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal"} -C3N-02700.WXS.T C3N-02700 HNSCC WXS tumor CPT0177010006 CPT0177010006.WholeExome.RP-1303.bam 19720424902 BAM aligned CPTAC3 cc6f27ed-c52f-4237-bca1-f1c6c8e374f0 1de62df88658403625612d2e6f6e18b6 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor"} -C3N-02700.WXS.T.hg38 C3N-02700 HNSCC WXS tumor CPT0177010006 fbabe3a3-fe14-4f2c-843c-6133204516cb_wxs_gdc_realn.bam 27004712849 BAM harmonized CPTAC3 04c61e7c-04e8-4ed4-a122-9d4e3e6332a4 1f1c830e9a06e4682ae0c94bae3d9078 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor"} -C3N-02713.MethArray.Green.A C3N-02713 HNSCC Methylation_Array tissue_normal CPT0190860009 203273200073_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c223a90e-e056-41d3-90cc-3e7be4377dfd f0228b5bf2692e4b09a49e012c1eaa1e {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.MethArray.Green.T C3N-02713 HNSCC Methylation_Array tumor CPT0190850006 203220070084_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7a74c016-2a22-40ab-bf0b-f345f63f142a b23f738009f46873a825f2696ce7e592 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor"} -C3N-02713.MethArray.Red.A C3N-02713 HNSCC Methylation_Array tissue_normal CPT0190860009 203273200073_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 4e93e0ce-fd72-403c-a422-9be7a5cd4e4f 389f418a94307738c36878a16fea5886 {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.MethArray.Red.T C3N-02713 HNSCC Methylation_Array tumor CPT0190850006 203220070084_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 d5a6301e-6600-475d-a758-ddd2196927f5 4a9392fd7e005600b087441407dbd0e2 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor"} -C3N-02713.miRNA-Seq.A.hg38 C3N-02713 HNSCC miRNA-Seq tissue_normal CPT0190860006 0ad2f2e0-a6a4-4fce-842f-b6a95a5fce4b_mirnaseq_gdc_realn.bam 236287994 BAM harmonized CPTAC3 cf50af66-5d61-40ed-80bd-b78f756f5b94 b3bc10fd9cef0853ec0149d60e841e8f {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.miRNA-Seq.S18_L003_R1.A C3N-02713 HNSCC miRNA-Seq tissue_normal CPT0190860006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L003_R1_001.unaln.bam 207170403 BAM S18_L003_R1 unaligned CPTAC3 2cc9853b-327c-45d3-aae2-54d10e8b9982 ce98f2fd3dfb80c395dba585ccbacd64 {"aliquot_tag": "ALQ_9a83825d", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.miRNA-Seq.S7_L003_R1.T C3N-02713 HNSCC miRNA-Seq tumor CPT0190850009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L003_R1_001.unaln.bam 231962904 BAM S7_L003_R1 unaligned CPTAC3 22876e3c-a1b3-4100-8a67-5e80b265b7de aea151dce7170eb413b0d15b3ad643a1 {"aliquot_tag": "ALQ_4d9ce51c", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02713.miRNA-Seq.T.hg38 C3N-02713 HNSCC miRNA-Seq tumor CPT0190850009 9fd7d10d-cd94-425a-acda-45ed003a252d_mirnaseq_gdc_realn.bam 262240674 BAM harmonized CPTAC3 ffb61a67-c9a6-43f3-b585-1d4347f30753 7fdb71340962de3d07ed5707c7e1bd16 {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.chimeric.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.chimeric.gdc_realn.bam 172294954 BAM chimeric harmonized CPTAC3 72c2d1c4-ec92-4f53-b209-921bddaf7299 0e9f126cfbbba0fce72733dc7956aaf2 {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.RNA-Seq.chimeric.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.chimeric.gdc_realn.bam 372130879 BAM chimeric harmonized CPTAC3 0b62eb52-5caf-4a0b-b1ca-5792e35d0472 6b89fc9960b12f1648b11d9fe97e5e98 {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.chimeric.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.chimeric.gdc_realn.bam 240598868 BAM chimeric harmonized CPTAC3 9873ca29-1c4c-4c33-891e-2a4d952e882d 4048d3c07a9376b93a8a3696ff281fe3 {"aliquot_tag": "ALQ_9facb16e", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.genomic.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.genomic.gdc_realn.bam 8126084783 BAM genomic harmonized CPTAC3 91ea79b4-5107-4c7f-9b54-fe7c01d7cecb 56715d64a4cc045222458ca66b012e83 {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.RNA-Seq.genomic.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.genomic.gdc_realn.bam 9069013422 BAM genomic harmonized CPTAC3 3e7b9a2f-f358-46e4-81d6-57c427b64fdc 0b51f9f10a63ec7219a66ad58079694d {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.genomic.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.genomic.gdc_realn.bam 10183591924 BAM genomic harmonized CPTAC3 49286e4b-6945-4042-ab08-ab8e69bca26f 4c7d6471ddf900978410b142276c407f {"aliquot_tag": "ALQ_9facb16e", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.S3_L001_R1.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R1_001.fastq.gz 4245817048 FASTQ S3_L001_R1 unaligned CPTAC3 338d0330-d99c-4bf4-a11e-1db9aa097111 623014745213ed5700415104862b5ac4 {"aliquot_tag": "ALQ_4d9ce51c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.S3_L001_R2.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R2_001.fastq.gz 4803689580 FASTQ S3_L001_R2 unaligned CPTAC3 d5711786-9237-41be-a275-40a299c3467b 7117c05b39ae41a848c318c9e5d525c4 {"aliquot_tag": "ALQ_4d9ce51c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.S4_L007_R1.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R1_001.fastq.gz 3823210591 FASTQ S4_L007_R1 unaligned CPTAC3 40aa5ffd-45cb-4efc-b9d7-53dd5268d2fa 0bf7a71b7be5e68a500fb25aff3dde3d {"aliquot_tag": "ALQ_9a83825d", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.RNA-Seq.S4_L007_R2.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R2_001.fastq.gz 3929758484 FASTQ S4_L007_R2 unaligned CPTAC3 b4c28fc1-5a8c-4507-854a-a958fb9c7271 464f0d8179aaf058591d53f71162a007 {"aliquot_tag": "ALQ_9a83825d", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.RNA-Seq.S61_R1.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R1_001.fastq.gz 5969543465 FASTQ S61_R1 unaligned CPTAC3 65bf5c81-1fdf-4e3f-8af1-c5a8b89eba91 f6ba27babb015c4d738ffa1f9a4615ed {"aliquot_tag": "ALQ_9facb16e", "sample": "S61", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.S61_R2.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R2_001.fastq.gz 6201097139 FASTQ S61_R2 unaligned CPTAC3 be7f1837-2a57-43e4-9754-b5bfacf23866 194a900587d9baddac812bc5205d9f43 {"aliquot_tag": "ALQ_9facb16e", "sample": "S61", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.transcriptome.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.transcriptome.gdc_realn.bam 10508551470 BAM transcriptome harmonized CPTAC3 abf52725-40f5-4604-8286-938b5c85b8c4 61aa23a1005874d1c3f5ddf8e87ad7c6 {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.RNA-Seq.transcriptome.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.transcriptome.gdc_realn.bam 9693312591 BAM transcriptome harmonized CPTAC3 748738b3-a89a-4f56-a846-fe783754d53c 565a48aa414aae5f22986dd8b2ffc929 {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor"} -C3N-02713.RNA-Seq.transcriptome.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.transcriptome.gdc_realn.bam 4588693820 BAM transcriptome harmonized CPTAC3 ab75b7ab-4509-4b7e-9e17-7e30a6edbdb5 6f272a99921280a6419160dc9ee80414 {"aliquot_tag": "ALQ_9facb16e", "gdc_sample_type": "Primary Tumor"} -C3N-02713.WGS.N C3N-02713 HNSCC WGS blood_normal CPT0190950002 CPT0190950002.WholeGenome.RP-1303.bam 56872296263 BAM aligned CPTAC3 0f7fc2c9-e574-4f99-b220-9b8ff5d3e84e e8af9c7a89379e5d98b92dec61e017cd {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02713.WGS.N.hg38 C3N-02713 HNSCC WGS blood_normal CPT0190950002 5561cc3f-6eba-4606-b11d-cf50a92930ca_wgs_gdc_realn.bam 81139399667 BAM harmonized CPTAC3 a1e33b48-f7a4-4841-bf1f-33499361accb 8cfe943600947c3e989450c7d004468e {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02713.WGS.T C3N-02713 HNSCC WGS tumor CPT0190850006 CPT0190850006.WholeGenome.RP-1303.bam 62672059516 BAM aligned CPTAC3 1f48d9a4-33f0-420c-baf8-553c9b134d9b f676c9864342ab8efe3e10d0f8ff046c {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor"} -C3N-02713.WGS.T.hg38 C3N-02713 HNSCC WGS tumor CPT0190850006 42aa457e-57fb-4a1b-8b9b-545a68b276ea_wgs_gdc_realn.bam 91118412291 BAM harmonized CPTAC3 274fd40b-741f-4dbf-b38e-cef21dc54e1a 2341f4bab0a3b09d894b8dddcbe0144a {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor"} -C3N-02713.WXS.A C3N-02713 HNSCC WXS tissue_normal CPT0190860009 CPT0190860009.WholeExome.RP-1303.bam 23706662329 BAM aligned CPTAC3 b54a6ef9-9013-4612-a855-13c1c9ae9962 6aa42af919b91038b6be0c3b9112f3e7 {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.WXS.A.hg38 C3N-02713 HNSCC WXS tissue_normal CPT0190860009 31f144ae-5db4-4343-8dd3-4c1ac587b8d8_wxs_gdc_realn.bam 33060654006 BAM harmonized CPTAC3 5a40157f-bc9f-4938-8dec-4b00946e9451 0b2fc362a993eabd4802eccfb2378d4d {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02713.WXS.N C3N-02713 HNSCC WXS blood_normal CPT0190950002 CPT0190950002.WholeExome.RP-1303.bam 29959572501 BAM aligned CPTAC3 dcced9cf-5a9f-4e0e-8b89-b15edfe96e49 153003203fa34ce86ed435c207fa8107 {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02713.WXS.N.hg38 C3N-02713 HNSCC WXS blood_normal CPT0190950002 5561cc3f-6eba-4606-b11d-cf50a92930ca_wxs_gdc_realn.bam 41026050013 BAM harmonized CPTAC3 7059f8f6-c62a-4f7b-80c5-eac4a9f710b2 b08f6b7212d98ce62904e3bb16593613 {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02713.WXS.T C3N-02713 HNSCC WXS tumor CPT0190850006 CPT0190850006.WholeExome.RP-1303.bam 26999941080 BAM aligned CPTAC3 72390380-c1ef-40d7-9764-21d8a170d137 3df8a8c51a83597f7ee1bc8b9816b656 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor"} -C3N-02713.WXS.T.hg38 C3N-02713 HNSCC WXS tumor CPT0190850006 42aa457e-57fb-4a1b-8b9b-545a68b276ea_wxs_gdc_realn.bam 36103410512 BAM harmonized CPTAC3 172a8ef7-760a-40c3-80dd-70b2c003267d 4ce22e9add880614c46b558184956753 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor"} -C3N-02714.MethArray.Green.A C3N-02714 HNSCC Methylation_Array tissue_normal CPT0177220006 203271740111_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a358550e-817c-4ebd-abb7-2cf4a517e025 47943aee4e8eb1c3c3422df892239b56 {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.MethArray.Green.T C3N-02714 HNSCC Methylation_Array tumor CPT0177200006 203271750057_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 544e123d-9e66-4384-b8f2-4797301afd7c 728ead446f058adb0e93a512c73055c1 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor"} -C3N-02714.MethArray.Red.A C3N-02714 HNSCC Methylation_Array tissue_normal CPT0177220006 203271740111_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 3439e225-13f7-40d6-bddc-2eb0c3d4c943 0971627572b9e0de4f74855b4dadb89d {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.MethArray.Red.T C3N-02714 HNSCC Methylation_Array tumor CPT0177200006 203271750057_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 fbce5746-50e8-4570-8643-1040bf7bd673 7956b80793bdc6567865fde87013a2f8 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor"} -C3N-02714.miRNA-Seq.A.hg38 C3N-02714 HNSCC miRNA-Seq tissue_normal CPT0177220009 a2bedb17-1519-478a-a01c-7448307b712f_mirnaseq_gdc_realn.bam 229966140 BAM harmonized CPTAC3 7b32b2eb-6d96-4568-801a-2dd6059ec48e 97345f56430518355bb6336f643031f4 {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.miRNA-Seq.S45_L002_R1.A C3N-02714 HNSCC miRNA-Seq tissue_normal CPT0177220009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L002_R1_001.unaln.bam 206188258 BAM S45_L002_R1 unaligned CPTAC3 94ac019e-eff0-4f0c-8963-978145c2d3f4 61dee28804b2216776ecd5d4ade0ea8e {"aliquot_tag": "ALQ_8e0a36d6", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.miRNA-Seq.S8_L001_R1.T C3N-02714 HNSCC miRNA-Seq tumor CPT0177200009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L001_R1_001.unaln.bam 239924869 BAM S8_L001_R1 unaligned CPTAC3 8a614d85-2053-4e89-970a-e4b5dba1f459 672769b3ed9b9089c41558a146af6b56 {"aliquot_tag": "ALQ_f4ca65b6", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02714.miRNA-Seq.T.hg38 C3N-02714 HNSCC miRNA-Seq tumor CPT0177200009 4744e2d1-a1a0-4b50-8170-371a726eb6be_mirnaseq_gdc_realn.bam 268207775 BAM harmonized CPTAC3 e297eaed-0118-40fc-b8b8-cef3bffa0ac3 fbf8bc4a5116dccb03795e18f1108a11 {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor"} -C3N-02714.RNA-Seq.chimeric.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.chimeric.gdc_realn.bam 152572423 BAM chimeric harmonized CPTAC3 e2891fdc-591f-4d87-bab1-e6c9e12e1869 4225f48736435a331b6e5d42f773f3fb {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.RNA-Seq.chimeric.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.chimeric.gdc_realn.bam 105129677 BAM chimeric harmonized CPTAC3 1fa16e5b-6f37-4a60-990a-48f83267d3ae e8b82cb18e76a5849737f946770cdc0d {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor"} -C3N-02714.RNA-Seq.genomic.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.genomic.gdc_realn.bam 8998242915 BAM genomic harmonized CPTAC3 ef7c7a78-82f1-43b4-aa75-9ba44381e3d0 c729afc269715219822f12b8b319d99d {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.RNA-Seq.genomic.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.genomic.gdc_realn.bam 9264380541 BAM genomic harmonized CPTAC3 246adef1-d506-49ee-a894-f8db00eb3ca3 be129d490d8bf4d665afcadb93cf9a41 {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor"} -C3N-02714.RNA-Seq.S20_L004_R1.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R1_001.fastq.gz 4174878368 FASTQ S20_L004_R1 unaligned CPTAC3 e2a0a4ab-0008-45fa-b6eb-f972d5441ce3 095704cdd4d7c7b86cdfc19756012384 {"aliquot_tag": "ALQ_8e0a36d6", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.RNA-Seq.S20_L004_R2.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R2_001.fastq.gz 4652175260 FASTQ S20_L004_R2 unaligned CPTAC3 e9c4d1af-a0be-42ab-8900-64ff9b5e96f1 145047b686aa568c95ee0a08dbaf573f {"aliquot_tag": "ALQ_8e0a36d6", "sample": "S20", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.RNA-Seq.S7_L002_R1.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 4390081023 FASTQ S7_L002_R1 unaligned CPTAC3 da47ac64-8561-4c91-a9df-284f46f3f992 00de404faef01427e97c31d5a0f29dba {"aliquot_tag": "ALQ_f4ca65b6", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02714.RNA-Seq.S7_L002_R2.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 4792391092 FASTQ S7_L002_R2 unaligned CPTAC3 f0c394e3-0e19-4403-9368-66c2ab88ef5a f940118a1dbd40c4cdca27d9100609e9 {"aliquot_tag": "ALQ_f4ca65b6", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02714.RNA-Seq.transcriptome.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.transcriptome.gdc_realn.bam 12252038594 BAM transcriptome harmonized CPTAC3 ccea9044-f72b-48e6-ac4f-e32561dbdca2 cfdb4717c57714674eb368c69df34565 {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.RNA-Seq.transcriptome.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.transcriptome.gdc_realn.bam 11907079148 BAM transcriptome harmonized CPTAC3 196ed2de-821b-40c4-8784-9e2f19c476c6 44866f4c3d88894c9e2e44d7e4b819f9 {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor"} -C3N-02714.WGS.N C3N-02714 HNSCC WGS blood_normal CPT0177310002 CPT0177310002.WholeGenome.RP-1303.bam 73162848881 BAM aligned CPTAC3 7d5cf71e-56b8-42b5-9ec3-c7b215d19275 b8ece1c2d604b30185075313569dd474 {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02714.WGS.N.hg38 C3N-02714 HNSCC WGS blood_normal CPT0177310002 4948ec26-0968-4423-9d77-9857cd193437_wgs_gdc_realn.bam 107123714772 BAM harmonized CPTAC3 bbab28a6-924b-473a-9db5-b3d410337242 db0a78e1ed75859bdcccd73636379b35 {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02714.WGS.T C3N-02714 HNSCC WGS tumor CPT0177200006 CPT0177200006.WholeGenome.RP-1303.bam 85976349954 BAM aligned CPTAC3 b896e6d7-6790-4e95-b067-b0546504cdab f9369044ee15d18cd040a1f7730f004a {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor"} -C3N-02714.WGS.T.hg38 C3N-02714 HNSCC WGS tumor CPT0177200006 915456b8-74cf-4951-b705-d7f887227032_wgs_gdc_realn.bam 126595025915 BAM harmonized CPTAC3 da8e51e6-7b8a-40e6-afd3-ab0e77650aa3 61909f8f1def75544675bed064a55010 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor"} -C3N-02714.WXS.A C3N-02714 HNSCC WXS tissue_normal CPT0177220006 CPT0177220006.WholeExome.RP-1303.bam 43630257952 BAM aligned CPTAC3 b027a7e7-1fa6-4780-a67b-a544e7601d4d 827d233154e1d5f887d311b0b65823b3 {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.WXS.A.hg38 C3N-02714 HNSCC WXS tissue_normal CPT0177220006 74a6e613-c977-464b-89f9-7acf4fab494f_wxs_gdc_realn.bam 59975981088 BAM harmonized CPTAC3 3b7b0eb1-948f-4cc8-adcd-d75ee58ac6a0 46501d6d6b4582235b6f55b9607d1132 {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02714.WXS.N C3N-02714 HNSCC WXS blood_normal CPT0177310002 CPT0177310002.WholeExome.RP-1303.bam 31651064803 BAM aligned CPTAC3 80a5b10d-519c-4fdf-a7cf-b4a664795c00 a4e6845e7c0198e5c6a943c9891ac82a {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02714.WXS.N.hg38 C3N-02714 HNSCC WXS blood_normal CPT0177310002 4948ec26-0968-4423-9d77-9857cd193437_wxs_gdc_realn.bam 43579386620 BAM harmonized CPTAC3 60036501-5c3f-425f-b353-a64cc8be71e7 0d655be56eaa02df6741026bbbe29abe {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02714.WXS.T C3N-02714 HNSCC WXS tumor CPT0177200006 CPT0177200006.WholeExome.RP-1303.bam 22081320218 BAM aligned CPTAC3 2c80cf32-115f-48cd-823d-a768dd8e9c35 90ca8a499ee367c215a72b2e27eb1d39 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor"} -C3N-02714.WXS.T.hg38 C3N-02714 HNSCC WXS tumor CPT0177200006 915456b8-74cf-4951-b705-d7f887227032_wxs_gdc_realn.bam 30594064184 BAM harmonized CPTAC3 bc1cb5e0-e744-4194-8c5f-6b30d719e3ed 06a38d43f92ecda286207094b7965132 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor"} -C3N-02715.MethArray.Green.A C3N-02715 LUAD Methylation_Array tissue_normal CPT0178450006 203219760065_R06C01_Grn.idat 13676230 IDAT Green NA CPTAC3 8228af4d-909e-46c9-aaa1-8aeff2765e3e 55375a42a27d412e5759727fdfe8f3f7 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.MethArray.Green.T C3N-02715 LUAD Methylation_Array tumor CPT0178430006 203219650202_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 02380527-29d1-42f5-ac52-ae76837b9f60 8e3e36884dd3b3ab0675e8990d42a576 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor"} -C3N-02715.MethArray.Red.A C3N-02715 LUAD Methylation_Array tissue_normal CPT0178450006 203219760065_R06C01_Red.idat 13676230 IDAT Red NA CPTAC3 3d8fcee7-2dfd-425f-956e-16263c410b09 127cd8eb8229e97d85fc70ca32c31602 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.MethArray.Red.T C3N-02715 LUAD Methylation_Array tumor CPT0178430006 203219650202_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 49e0e185-ad36-4173-83c0-165be1ba35fa 40f8cf4e552b36bf8148218fffcdeb31 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor"} -C3N-02715.miRNA-Seq.A.hg38 C3N-02715 LUAD miRNA-Seq tissue_normal CPT0178450009 aa0841a9-e26c-4612-a3d6-9c40b71a20fa_mirnaseq_gdc_realn.bam 282032028 BAM harmonized CPTAC3 c2204fcb-0337-4303-b338-c9c881f8e4b4 622cf6f7718ca88b0410e9a3a49629c9 {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.miRNA-Seq.S12_L008_R1.A C3N-02715 LUAD miRNA-Seq tissue_normal CPT0178450009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L008_R1_001.unaln.bam 256724201 BAM S12_L008_R1 unaligned CPTAC3 62931108-f4c5-4ba9-b472-a8a411a661b9 3fdd27ba2ae34357c63781ba4d271d5b {"aliquot_tag": "ALQ_1c3b7932", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.miRNA-Seq.S42_L007_R1.T C3N-02715 LUAD miRNA-Seq tumor CPT0178430009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAATCG_S42_L007_R1_001.unaln.bam 232159614 BAM S42_L007_R1 unaligned CPTAC3 b076785d-01b2-44a7-86b1-ac739feeb87f 4649d745d64e13f42ff412294b1f3a62 {"aliquot_tag": "ALQ_937b8c92", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02715.miRNA-Seq.T.hg38 C3N-02715 LUAD miRNA-Seq tumor CPT0178430009 8b5541d7-75e0-4e94-b2d9-ca1a54038201_mirnaseq_gdc_realn.bam 252238038 BAM harmonized CPTAC3 5e750405-84de-4394-b096-8ccab9e4b9ae abef246e16055e3d32ce95b215185529 {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor"} -C3N-02715.RNA-Seq.chimeric.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.chimeric.gdc_realn.bam 584400367 BAM chimeric harmonized CPTAC3 bd8f1cd6-d2a6-49d5-a1ea-c91522fc4f91 1e943431ba4834ca63041ef13a300b14 {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.RNA-Seq.chimeric.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.chimeric.gdc_realn.bam 44691360 BAM chimeric harmonized CPTAC3 76dffca6-9815-4656-8fd0-02684eb20a6b 7dd629e7fc3d17b13159341e40db7526 {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor"} -C3N-02715.RNA-Seq.genomic.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.genomic.gdc_realn.bam 7644860746 BAM genomic harmonized CPTAC3 1cfdfbee-47f6-4619-b1cc-363f04fb84be 78916b1ab243d5aba86c93af46cbefba {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.RNA-Seq.genomic.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.genomic.gdc_realn.bam 8924830046 BAM genomic harmonized CPTAC3 2922d2c9-58f1-4113-b55b-fcdd81153ba0 0d66a540e716b61017641ee3a1ac41a2 {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor"} -C3N-02715.RNA-Seq.S12_L003_R1.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R1_001.fastq.gz 4060589069 FASTQ S12_L003_R1 unaligned CPTAC3 99d5a6fe-cf39-4df4-8a01-a12c30e6a658 dbdd99fcdc486ff75e79f1aa9dff2c34 {"aliquot_tag": "ALQ_937b8c92", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02715.RNA-Seq.S12_L003_R2.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R2_001.fastq.gz 4075908359 FASTQ S12_L003_R2 unaligned CPTAC3 9bd06bf2-e0b6-409b-a8ee-03d9537ce978 6f41fe3ab20df5f6aeab7f5bdd3e880d {"aliquot_tag": "ALQ_937b8c92", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02715.RNA-Seq.S1_L004_R1.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R1_001.fastq.gz 3325972702 FASTQ S1_L004_R1 unaligned CPTAC3 643a4cde-7533-4e16-bca2-fa6b9c96054d 163e88e3a070ebc865652bfd0c3f5ea8 {"aliquot_tag": "ALQ_1c3b7932", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.RNA-Seq.S1_L004_R2.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R2_001.fastq.gz 3796835263 FASTQ S1_L004_R2 unaligned CPTAC3 4099d089-2604-4093-9bed-ab6b922bc460 21702d95e85cf917fde7ce245deb4144 {"aliquot_tag": "ALQ_1c3b7932", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.RNA-Seq.transcriptome.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.transcriptome.gdc_realn.bam 7087001494 BAM transcriptome harmonized CPTAC3 34e1bb4d-a96f-47bc-a878-6c2b8147fd72 0e0b2c6f0faf167da4b7fe9e96bcf265 {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.RNA-Seq.transcriptome.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.transcriptome.gdc_realn.bam 9223332551 BAM transcriptome harmonized CPTAC3 de9fc16a-4fb8-4fef-afc1-773f8418103b bf300a2c4a052bb9759a14fdfc08baad {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor"} -C3N-02715.WGS.N C3N-02715 LUAD WGS blood_normal CPT0178540002 CPT0178540002.WholeGenome.RP-1303.bam 116204569250 BAM aligned CPTAC3 8f10c6bc-98fc-40d0-bb67-3f6a2d64dbdc 54c2399692144983aada85aefac60c2f {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02715.WGS.N.hg38 C3N-02715 LUAD WGS blood_normal CPT0178540002 e594cc1c-e76d-45f7-a1bd-9dd1b5a32558_wgs_gdc_realn.bam 169182461756 BAM harmonized CPTAC3 0ece1d84-4e97-4569-bc09-1a6efe7eebbf 4b6af13bf72677d7109a44693a1436aa {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02715.WGS.T C3N-02715 LUAD WGS tumor CPT0178430006 CPT0178430006.WholeGenome.RP-1303.bam 121427432052 BAM aligned CPTAC3 82f02f22-9b44-4b08-9aef-ab8eacd750e7 6f5b27621952546dc1f941631da38ae6 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor"} -C3N-02715.WGS.T.hg38 C3N-02715 LUAD WGS tumor CPT0178430006 1139caf2-ecb2-4e8f-9796-762e38673aa1_wgs_gdc_realn.bam 173752413510 BAM harmonized CPTAC3 3227f777-71b0-47cf-b18b-095ddb303548 44b29224c532cda094eafbb8d58bf228 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor"} -C3N-02715.WXS.A C3N-02715 LUAD WXS tissue_normal CPT0178450006 CPT0178450006.WholeExome.RP-1303.bam 20077900611 BAM aligned CPTAC3 18a643dd-084e-42dc-a8c4-0536276d0551 b843c86307c05d51293d3c472fa20566 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.WXS.A.hg38 C3N-02715 LUAD WXS tissue_normal CPT0178450006 cf3c1875-38d0-472a-87fb-cd9420edaf6d_wxs_gdc_realn.bam 27939719204 BAM harmonized CPTAC3 9363a506-6e48-4dfc-aea9-1648e6630c22 89c7ae25ba7b0ef72994d698cef3fb27 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02715.WXS.N C3N-02715 LUAD WXS blood_normal CPT0178540002 CPT0178540002.WholeExome.RP-1303.bam 24228837217 BAM aligned CPTAC3 fc0efa89-5dff-44fd-a8bc-208d71342131 7075c2fc56425d8aa09456fb54706b18 {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02715.WXS.N.hg38 C3N-02715 LUAD WXS blood_normal CPT0178540002 e594cc1c-e76d-45f7-a1bd-9dd1b5a32558_wxs_gdc_realn.bam 33149159779 BAM harmonized CPTAC3 365839ce-f25a-470c-ae78-31612e6eace8 b6a0324161442e285b08d192a8e8cd7b {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal"} -C3N-02715.WXS.T C3N-02715 LUAD WXS tumor CPT0178430006 CPT0178430006.WholeExome.RP-1303.bam 28633624386 BAM aligned CPTAC3 158f2d17-12a8-4f63-8f5f-ef587af15306 de5797bb5801b8c40660bcef40a78b54 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor"} -C3N-02715.WXS.T.hg38 C3N-02715 LUAD WXS tumor CPT0178430006 1139caf2-ecb2-4e8f-9796-762e38673aa1_wxs_gdc_realn.bam 39439801401 BAM harmonized CPTAC3 43c76bf8-c4f9-4626-8289-5d4053c2edc9 30138f35bb43761c9ae133c8d02f29b3 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor"} -C3N-02716.MethArray.Green.T C3N-02716 HNSCC Methylation_Array tumor CPT0177390006 203281980258_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 87a09fd6-eda3-45c3-87c7-78478ecbdcfc f31f20db9204a012510852beedac265d {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor"} -C3N-02716.MethArray.Red.T C3N-02716 HNSCC Methylation_Array tumor CPT0177390006 203281980258_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 0194ec90-7fd1-4a46-b0e1-c769faa8ce6d 77d1475c1ca8a48c511c7b647047c43f {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor"} -C3N-02716.miRNA-Seq.S9_L001_R1.T C3N-02716 HNSCC miRNA-Seq tumor CPT0177390009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L001_R1_001.unaln.bam 214089735 BAM S9_L001_R1 unaligned CPTAC3 b48518d2-4f00-423c-8e34-41d76b99e39d b584b68ae39dbd65e7bed3964ab9f1e3 {"aliquot_tag": "ALQ_3286d462", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02716.miRNA-Seq.T.hg38 C3N-02716 HNSCC miRNA-Seq tumor CPT0177390009 d624b662-0c8b-46ab-9648-30e6e55c6bfb_mirnaseq_gdc_realn.bam 246357862 BAM harmonized CPTAC3 dc5e121b-412b-4c5d-9348-d01ae77f77d5 6d013493d7ee5bf6b200d9347ba2b401 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.chimeric.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.chimeric.gdc_realn.bam 204715848 BAM chimeric harmonized CPTAC3 8cffda36-8d58-4f14-bf5f-3061c8efb967 c1e3c2688c6d6f46a653852528921479 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.chimeric.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.chimeric.gdc_realn.bam 138529077 BAM chimeric harmonized CPTAC3 b1662126-af39-441a-acf9-537a731e1cb0 402098802f0399908859198681a813ba {"aliquot_tag": "ALQ_4f936cb8", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.genomic.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.genomic.gdc_realn.bam 8524850451 BAM genomic harmonized CPTAC3 f0e6875c-bda1-433c-9f18-a838ad14ad5d addd04bca295cd65765dc2131ea4bd06 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.genomic.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.genomic.gdc_realn.bam 8205917103 BAM genomic harmonized CPTAC3 540fbebe-d5be-4edb-a18f-6c21cd53d715 8e894d89e5fcdeb82682b7a05d336212 {"aliquot_tag": "ALQ_4f936cb8", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.S89_R1.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R1_001.fastq.gz 4776207004 FASTQ S89_R1 unaligned CPTAC3 2d1364f2-e2c9-467f-bd2c-bff4e854418f 41d232321624ac6d76cddfcd5b7289bf {"aliquot_tag": "ALQ_4f936cb8", "sample": "S89", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.S89_R2.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R2_001.fastq.gz 4881239176 FASTQ S89_R2 unaligned CPTAC3 89a90b50-c8c5-4a39-88ae-d6821f0d0a1b fac1b90f26df5b7f1803132c5f409cdb {"aliquot_tag": "ALQ_4f936cb8", "sample": "S89", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.S9_L003_R1.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3966501182 FASTQ S9_L003_R1 unaligned CPTAC3 f055f99e-1633-4ffe-b32e-967bdf12f93d 3291fd0949590c882e45082954ff4d6c {"aliquot_tag": "ALQ_3286d462", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.S9_L003_R2.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R2_001.fastq.gz 4322871554 FASTQ S9_L003_R2 unaligned CPTAC3 49406ea3-f42e-4737-b584-1d03567cf44e 33a0c7384d3f4c197bf70ae991185689 {"aliquot_tag": "ALQ_3286d462", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.transcriptome.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.transcriptome.gdc_realn.bam 10858584491 BAM transcriptome harmonized CPTAC3 3c06402f-d668-4671-b9ac-f73954fcc700 c625f10d1144b5bfa770bc28d7ebe3f4 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor"} -C3N-02716.RNA-Seq.transcriptome.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.transcriptome.gdc_realn.bam 5629009216 BAM transcriptome harmonized CPTAC3 4a6e37c9-8e5d-48de-95b7-836bbf30cd62 f3504e8067fc8177a936b8124299df7d {"aliquot_tag": "ALQ_4f936cb8", "gdc_sample_type": "Primary Tumor"} -C3N-02716.WGS.N C3N-02716 HNSCC WGS blood_normal CPT0177460002 CPT0177460002.WholeGenome.RP-1303.bam 54711236571 BAM aligned CPTAC3 389002d0-a472-4211-877a-ac06ee93287b 45d9034ef70f3e1b305c8ec5634f65bf {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02716.WGS.N.hg38 C3N-02716 HNSCC WGS blood_normal CPT0177460002 bde91dec-8d07-4ee3-99b4-6971f804db5c_wgs_gdc_realn.bam 79666208867 BAM harmonized CPTAC3 f9d79874-b399-49ef-baf0-814d2e91992b 8cf2fbdee2b8c44fcb470b312e18a3fc {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02716.WGS.T C3N-02716 HNSCC WGS tumor CPT0177390006 CPT0177390006.WholeGenome.RP-1303.bam 61396402040 BAM aligned CPTAC3 9d114635-b2f9-48d7-8788-9fad9f6c507f f9c019740ecb074d6ba13f386b01ed5d {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor"} -C3N-02716.WGS.T.hg38 C3N-02716 HNSCC WGS tumor CPT0177390006 ce0bdb88-35de-4d0b-8327-7432e177c9af_wgs_gdc_realn.bam 90658341348 BAM harmonized CPTAC3 c0d58649-4a94-4552-90ef-6301b1e7ad0d a9a55ed56cb1842bd75dd0e5e286dfdd {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor"} -C3N-02716.WXS.N C3N-02716 HNSCC WXS blood_normal CPT0177460002 CPT0177460002.WholeExome.RP-1303.bam 31465866202 BAM aligned CPTAC3 85f7c4ca-d5b7-4fff-9bb2-e267d2ed67f5 79f4c9ecdfce3bc470077fc3f40d4f08 {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02716.WXS.N.hg38 C3N-02716 HNSCC WXS blood_normal CPT0177460002 bde91dec-8d07-4ee3-99b4-6971f804db5c_wxs_gdc_realn.bam 44822495761 BAM harmonized CPTAC3 836ef24f-275a-49d5-b56e-cbf6b37d6d62 00b83bbd2eff2f855328f98ff47f1fa2 {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal"} -C3N-02716.WXS.T C3N-02716 HNSCC WXS tumor CPT0177390006 CPT0177390006.WholeExome.RP-1303.bam 22602338856 BAM aligned CPTAC3 11b98d7a-f1e1-4460-bde1-eadb0927264b d21e8172c083dac285bf41fc11cae87d {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor"} -C3N-02716.WXS.T.hg38 C3N-02716 HNSCC WXS tumor CPT0177390006 ce0bdb88-35de-4d0b-8327-7432e177c9af_wxs_gdc_realn.bam 32000977577 BAM harmonized CPTAC3 bfdc1d84-4e38-45f9-b874-5964e2f89158 20a54d7f9cc71e9a8e65d714b232ad1c {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor"} -C3N-02718.MethArray.Green.A C3N-02718 LUAD Methylation_Array tissue_normal CPT0178630005 203219650169_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ef547a00-84af-424c-baab-03b1e77de597 949f29b400bb3b14a4c1708bba61d8e9 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.MethArray.Green.T C3N-02718 LUAD Methylation_Array tumor CPT0178620006 203219670217_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 61886176-a3eb-4cba-ad62-6e015222eb58 258b720976d18793e295f72953eecb06 {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor"} -C3N-02718.MethArray.Red.A C3N-02718 LUAD Methylation_Array tissue_normal CPT0178630005 203219650169_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 b7af7c63-cef2-4b9e-8838-c37205d65a69 5c1562be75c882a50b692a1639dc4c82 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.MethArray.Red.T C3N-02718 LUAD Methylation_Array tumor CPT0178620006 203219670217_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 d955cb7b-81bc-4b88-b684-27badaed3b19 0c385ca755643421bd155493ecf0d64b {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor"} -C3N-02718.miRNA-Seq.A.hg38 C3N-02718 LUAD miRNA-Seq tissue_normal CPT0178630008 d17bb5b6-8ec1-4d90-a8bd-46cc5b8284d0_mirnaseq_gdc_realn.bam 274779961 BAM harmonized CPTAC3 48d16276-6552-4b3f-bd9e-baa289bdf69c 56db28af56f55c9c612495548764081c {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.miRNA-Seq.S13_L008_R1.A C3N-02718 LUAD miRNA-Seq tissue_normal CPT0178630008 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L008_R1_001.unaln.bam 254268536 BAM S13_L008_R1 unaligned CPTAC3 63798002-dc79-4e04-94a5-ad67560967ea 04d81d3c5ddcb03031ab08fae9af63e0 {"aliquot_tag": "ALQ_a9b41d0f", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.miRNA-Seq.S43_L007_R1.T C3N-02718 LUAD miRNA-Seq tumor CPT0178620009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L007_R1_001.unaln.bam 170289195 BAM S43_L007_R1 unaligned CPTAC3 5d31f8de-663f-42d6-a417-53e92a65403c f18f0078ce93b292b453fde2fe31659c {"aliquot_tag": "ALQ_e3d30429", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02718.miRNA-Seq.T.hg38 C3N-02718 LUAD miRNA-Seq tumor CPT0178620009 381b34f3-b3b3-46a1-9a2f-ee9e520795a5_mirnaseq_gdc_realn.bam 186840577 BAM harmonized CPTAC3 51e80c0f-7cbf-4a13-bdad-e238e1808f1c fbff89d2997c64dceeedd423b3bbd3a0 {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor"} -C3N-02718.RNA-Seq.chimeric.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.chimeric.gdc_realn.bam 344886195 BAM chimeric harmonized CPTAC3 2b172b4e-6425-4569-aa92-baf7e7661e50 2f330d9d349e07d52c7cc61f0d1aaada {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.RNA-Seq.chimeric.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.chimeric.gdc_realn.bam 55944335 BAM chimeric harmonized CPTAC3 c4064db0-7606-4a5d-95ca-1d995484b42a 55ce409741871e69efaad8e9f31aebbc {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor"} -C3N-02718.RNA-Seq.genomic.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.genomic.gdc_realn.bam 7588693603 BAM genomic harmonized CPTAC3 d1be54ae-968a-4176-8c5d-3f5c3d1aeefc f971f4ec71c84799e02eb9009177bed8 {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.RNA-Seq.genomic.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.genomic.gdc_realn.bam 10925758073 BAM genomic harmonized CPTAC3 0549236e-c8a6-492f-be72-b24281d87ca0 326b0ede08e9bdb1716c91e078cbd3bb {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor"} -C3N-02718.RNA-Seq.S7_L002_R1.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 4237221425 FASTQ S7_L002_R1 unaligned CPTAC3 1a459018-a847-4dc6-b916-d26873443a99 041570c614f59118eb7368a5cab5af58 {"aliquot_tag": "ALQ_e3d30429", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02718.RNA-Seq.S7_L002_R2.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 4592649349 FASTQ S7_L002_R2 unaligned CPTAC3 e7b10c68-31e0-42ed-8e2d-39816e24c52a d85c5fdfcfd264de5449b150fa92f939 {"aliquot_tag": "ALQ_e3d30429", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02718.RNA-Seq.S9_L003_R1.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R1_001.fastq.gz 3216831020 FASTQ S9_L003_R1 unaligned CPTAC3 014c4884-0a7c-499f-b4ea-85745d438e4f 0cd60a55dc2393bddb65ae4ed281a8c4 {"aliquot_tag": "ALQ_a9b41d0f", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.RNA-Seq.S9_L003_R2.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R2_001.fastq.gz 3574959410 FASTQ S9_L003_R2 unaligned CPTAC3 3128bf1d-a5e2-4d72-a542-22c503956735 aba1cb94f9739a9333a0eee10adaf09c {"aliquot_tag": "ALQ_a9b41d0f", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.RNA-Seq.transcriptome.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.transcriptome.gdc_realn.bam 8212400513 BAM transcriptome harmonized CPTAC3 faf57426-8f30-4fcd-b8ee-aa27610ac48f 0326d1d60a88dcb4c3a9c1190b465c00 {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.RNA-Seq.transcriptome.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.transcriptome.gdc_realn.bam 9455351118 BAM transcriptome harmonized CPTAC3 ee16fa09-219c-4bc5-956b-75ddf42aaa03 e1250b2030b576d38b279feae5296fa1 {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor"} -C3N-02718.WGS.N C3N-02718 LUAD WGS blood_normal CPT0178720002 CPT0178720002.WholeGenome.RP-1303.bam 116130482592 BAM aligned CPTAC3 58fe3455-3fa9-4cf4-adb6-7fb4237b4b9e 26fefc4eeb98dce7abdb2e4e0003a291 {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02718.WGS.N.hg38 C3N-02718 LUAD WGS blood_normal CPT0178720002 67b74651-4a43-4632-964a-dac9ca7fecd2_wgs_gdc_realn.bam 167722313865 BAM harmonized CPTAC3 9753c811-ad70-4d6e-8c2b-602ce8e18725 02270a16e40e8f226683a4784df10451 {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02718.WGS.T C3N-02718 LUAD WGS tumor CPT0178620006 CPT0178620006.WholeGenome.RP-1303.bam 49544054043 BAM aligned CPTAC3 7cf9ed95-39a5-4f64-87b9-d82cceef7754 08d6e0f8e8fd9f45f514e85a4e40ca1a {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor"} -C3N-02718.WGS.T.hg38 C3N-02718 LUAD WGS tumor CPT0178620006 36d00243-468f-4037-a80b-cc631ea7681c_wgs_gdc_realn.bam 72375071347 BAM harmonized CPTAC3 511b4186-4b0a-4cfc-a049-11211066389f a64b1d4aa8d5e0d9e5e293e9d6c832b2 {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor"} -C3N-02718.WXS.A C3N-02718 LUAD WXS tissue_normal CPT0178630005 CPT0178630005.WholeExome.RP-1303.bam 27633228090 BAM aligned CPTAC3 4c7e4dd1-59ee-4b0e-89b0-6d3cf784fd21 324f956d4b60c6ab764132dc19512530 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.WXS.A.hg38 C3N-02718 LUAD WXS tissue_normal CPT0178630005 83401ac2-b5bf-4edf-882c-baabb75ab924_wxs_gdc_realn.bam 37575217093 BAM harmonized CPTAC3 439aba6a-78ac-4392-b8de-645f15c8f448 ae643fdefbc05cd1d024b15baae8f835 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02718.WXS.N C3N-02718 LUAD WXS blood_normal CPT0178720002 CPT0178720002.WholeExome.RP-1303.bam 24470757421 BAM aligned CPTAC3 fcc2f80a-9b92-4eb0-b048-eb87e6767c51 a1b19dbcfca877c6cdccdbc8a48cc98c {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02718.WXS.N.hg38 C3N-02718 LUAD WXS blood_normal CPT0178720002 67b74651-4a43-4632-964a-dac9ca7fecd2_wxs_gdc_realn.bam 33750878611 BAM harmonized CPTAC3 86c0d1c0-70da-4141-a527-e78ca49000d3 b260af6d7d4760e3c53596cc2fc93fa7 {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal"} -C3N-02718.WXS.T C3N-02718 LUAD WXS tumor CPT0178620006 CPT0178620006.WholeExome.RP-1303.bam 31724634905 BAM aligned CPTAC3 1f25069f-bc2c-457a-b258-b2f71dab05fe 6c98a655cc3a284a220c18fc982eed2e {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor"} -C3N-02718.WXS.T.hg38 C3N-02718 LUAD WXS tumor CPT0178620006 36d00243-468f-4037-a80b-cc631ea7681c_wxs_gdc_realn.bam 44458150172 BAM harmonized CPTAC3 8c2c9bfc-8fb9-4791-bf8f-41792fbd3b98 6bec4bf67a940a0b51b8320161cb801e {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor"} -C3N-02721.MethArray.Green.A C3N-02721 LUAD Methylation_Array tissue_normal CPT0178810006 203219650157_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 418bb0c3-b523-4710-91a6-8266e4d96aae 4f132c79d6dde17c420827ee9582fa87 {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.MethArray.Green.T C3N-02721 LUAD Methylation_Array tumor CPT0178800006 203219640172_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 794867dc-c9b7-4232-ae9d-714373086e6e c9799d28036316d83aa591f70a558de1 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor"} -C3N-02721.MethArray.Red.A C3N-02721 LUAD Methylation_Array tissue_normal CPT0178810006 203219650157_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 e365b4b1-f183-4491-819f-786725461c97 7dcde1d59f92fd4ae807c6546c1a803e {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.MethArray.Red.T C3N-02721 LUAD Methylation_Array tumor CPT0178800006 203219640172_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 09788a0d-1383-4756-91a7-c0a4bae06042 e40bed4038bc271389259bccbe1cb5a5 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor"} -C3N-02721.miRNA-Seq.A.hg38 C3N-02721 LUAD miRNA-Seq tissue_normal CPT0178810009 4bfdf094-a8e1-44af-ac38-5230c67ab2d7_mirnaseq_gdc_realn.bam 246845314 BAM harmonized CPTAC3 258ee08a-0d35-4e35-8698-5fa5bd456fd9 f9797062193c932bbeecbc62e5de23f7 {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.miRNA-Seq.S14_L008_R1.A C3N-02721 LUAD miRNA-Seq tissue_normal CPT0178810009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L008_R1_001.unaln.bam 226270796 BAM S14_L008_R1 unaligned CPTAC3 63872e94-bec7-456f-953f-6c034278bc40 fd12794f34a4a32d28f66e6fe7195fb2 {"aliquot_tag": "ALQ_9e791f89", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.miRNA-Seq.S1_L006_R1.T C3N-02721 LUAD miRNA-Seq tumor CPT0178800009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L006_R1_001.unaln.bam 203477465 BAM S1_L006_R1 unaligned CPTAC3 496e9b03-4613-44d9-843e-b20224b8e9c9 3b0642f3eba0a743f81238e0604e884f {"aliquot_tag": "ALQ_a3193639", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02721.miRNA-Seq.T.hg38 C3N-02721 LUAD miRNA-Seq tumor CPT0178800009 6bc47314-a931-47a1-97b6-90375dc7d2f4_mirnaseq_gdc_realn.bam 224550621 BAM harmonized CPTAC3 a1cd6004-8d70-4834-a198-736f37c7def0 743c132a8d1d1785e3f931d0fc5371ac {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor"} -C3N-02721.RNA-Seq.chimeric.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.chimeric.gdc_realn.bam 393912738 BAM chimeric harmonized CPTAC3 5bd208d1-65ea-4d0d-8400-1f468c69c29c f69aba9850b66c8dd5dbc3797a1e412e {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.RNA-Seq.chimeric.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.chimeric.gdc_realn.bam 46098537 BAM chimeric harmonized CPTAC3 83ecf2ea-a43b-431e-99a8-d2064cbaa29d 145897c74c5367310a4f989bd639b8ee {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor"} -C3N-02721.RNA-Seq.genomic.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.genomic.gdc_realn.bam 7505596406 BAM genomic harmonized CPTAC3 388f4f96-99fd-4fcc-aa9d-02b94a5af9d6 162f45bad4992e4778b8c2578e8beced {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.RNA-Seq.genomic.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.genomic.gdc_realn.bam 9209293091 BAM genomic harmonized CPTAC3 0e777352-a175-49e8-90d5-99b25edfd55f 1d004e18c36a0cbc03a504f893522672 {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor"} -C3N-02721.RNA-Seq.S23_L007_R1.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R1_001.fastq.gz 3963700474 FASTQ S23_L007_R1 unaligned CPTAC3 8f5345f6-e100-4e0e-bdb2-39ac6d75cd1c 93db658b5cf591a0be47452ad3d60800 {"aliquot_tag": "ALQ_a3193639", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02721.RNA-Seq.S23_L007_R2.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R2_001.fastq.gz 4494736949 FASTQ S23_L007_R2 unaligned CPTAC3 0125e60b-4a2c-4158-943c-2bed5fce13e4 623ca1ae2529300955549027ebcfa30c {"aliquot_tag": "ALQ_a3193639", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02721.RNA-Seq.S5_L002_R1.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3311038609 FASTQ S5_L002_R1 unaligned CPTAC3 3c56248a-08ae-4460-8f93-ce4fd74e3406 5c51dd3d75b5bf612a2ec906b0407e10 {"aliquot_tag": "ALQ_9e791f89", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.RNA-Seq.S5_L002_R2.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3569820931 FASTQ S5_L002_R2 unaligned CPTAC3 5eac8375-120f-4fb9-9caf-1e4ecbbc075d ce7f17d5dcf91ba178a15cff01b4e4d0 {"aliquot_tag": "ALQ_9e791f89", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.RNA-Seq.transcriptome.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.transcriptome.gdc_realn.bam 7446941841 BAM transcriptome harmonized CPTAC3 5afa0f58-2fc5-4586-8395-632ce50d740b a04f31d32eb76825a2c51e7759d3541c {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.RNA-Seq.transcriptome.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.transcriptome.gdc_realn.bam 10730157312 BAM transcriptome harmonized CPTAC3 4f1957e3-5166-4604-8884-4b9aef3a1a3c 9286728037d354f98bdca4e4988b5fbc {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor"} -C3N-02721.WGS.N C3N-02721 LUAD WGS blood_normal CPT0178900002 CPT0178900002.WholeGenome.RP-1303.bam 116495578059 BAM aligned CPTAC3 25b6180e-7ffd-48be-b421-35a0ad5eabc1 29e50a8c1815bff19a95c2858a96c6b5 {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal"} -C3N-02721.WGS.N.hg38 C3N-02721 LUAD WGS blood_normal CPT0178900002 e5ed6752-7079-41f8-9fd3-2925e8c90155_wgs_gdc_realn.bam 168281135953 BAM harmonized CPTAC3 9b4f943d-df31-4af6-8440-8c050e224e61 41930ffe63a9897e306964ff04103c06 {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal"} -C3N-02721.WGS.T C3N-02721 LUAD WGS tumor CPT0178800006 CPT0178800006.WholeGenome.RP-1303.bam 86979596607 BAM aligned CPTAC3 868c6210-0711-40c0-b4a6-e3c7fa63d4bb ec28664cf0f64ad2be5e92a23b950f48 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor"} -C3N-02721.WGS.T.hg38 C3N-02721 LUAD WGS tumor CPT0178800006 37a6854f-dcb9-4ebc-a765-b4e0d8e46f0c_wgs_gdc_realn.bam 124813671673 BAM harmonized CPTAC3 326da9b8-0686-4d92-86a7-8622e7ee88ef 3c96644dd39fa47865412bf809c67fa5 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor"} -C3N-02721.WXS.A C3N-02721 LUAD WXS tissue_normal CPT0178810006 CPT0178810006.WholeExome.RP-1303.bam 44209407950 BAM aligned CPTAC3 d0e5b987-2c66-4b4b-8c62-398d61de65bb 11524829f767f2880304c4536158b8a9 {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.WXS.A.hg38 C3N-02721 LUAD WXS tissue_normal CPT0178810006 baf59367-f45c-4c75-8051-098670a5fd5e_wxs_gdc_realn.bam 60421908294 BAM harmonized CPTAC3 9ab83a38-6cdc-4e06-b75a-f732c163e5a1 9da9b669ddec77731e478f5ef6933afa {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02721.WXS.N C3N-02721 LUAD WXS blood_normal CPT0178900002 CPT0178900002.WholeExome.RP-1303.bam 33160677383 BAM aligned CPTAC3 98eae1cf-d4d0-406b-8c4b-91bc9126ba64 ccd9124b3c7f7ee933a2ec778e5ed94a {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal"} -C3N-02721.WXS.N.hg38 C3N-02721 LUAD WXS blood_normal CPT0178900002 e5ed6752-7079-41f8-9fd3-2925e8c90155_wxs_gdc_realn.bam 44776929421 BAM harmonized CPTAC3 885ee210-8b91-479a-ac14-c134d7954134 ae1a2c09b0392895a121dbd040663695 {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal"} -C3N-02721.WXS.T C3N-02721 LUAD WXS tumor CPT0178800006 CPT0178800006.WholeExome.RP-1303.bam 21466879640 BAM aligned CPTAC3 92383eef-2a3f-4d3d-850b-91c2a3b1eceb 8b6fe9977cdc86f8e43670f8bc72eae4 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor"} -C3N-02721.WXS.T.hg38 C3N-02721 LUAD WXS tumor CPT0178800006 37a6854f-dcb9-4ebc-a765-b4e0d8e46f0c_wxs_gdc_realn.bam 29385537180 BAM harmonized CPTAC3 8768f992-d681-4acf-b6cf-e13554618075 2f1cbacec1c83347e42dbc8b8779c9f4 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor"} -C3N-02723.MethArray.Green.A C3N-02723 CCRCC Methylation_Array tissue_normal CPT0176250006 204930640064_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4f423cc1-4131-4814-9acd-0d440088c302 e60ab0acf24e9b72bcfccc335bbc23ce {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.MethArray.Green.T C3N-02723 CCRCC Methylation_Array tumor CPT0176220006 203219640160_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 af6a3af6-c28b-4068-9c49-ab2e88b994c8 24883077d15979102e5b9fc243132285 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor"} -C3N-02723.MethArray.Red.A C3N-02723 CCRCC Methylation_Array tissue_normal CPT0176250006 204930640064_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 e1f7e003-3ddd-4d5f-9dbd-336ee1e60bc8 37b3233b6253eeb3cf6468588dcd47bc {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.MethArray.Red.T C3N-02723 CCRCC Methylation_Array tumor CPT0176220006 203219640160_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 b1b3b7ba-db73-4739-a75f-2c2f6df5115a 6ec9442254c7cd6e39c10c1de9851ce7 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor"} -C3N-02723.miRNA-Seq.A.hg38 C3N-02723 CCRCC miRNA-Seq tissue_normal CPT0176250009 3bfd6572-f631-4dbb-8aac-d971b77f0435_mirnaseq_gdc_realn.bam 189341343 BAM harmonized CPTAC3 bdc0a79e-4cb1-4cd3-80e4-93cd19820f84 4b16b45a17cf49a819e034833d01efeb {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.miRNA-Seq.S29_L005_R1.T C3N-02723 CCRCC miRNA-Seq tumor CPT0176220009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L005_R1_001.unaln.bam 210180146 BAM S29_L005_R1 unaligned CPTAC3 e00b4c98-cf47-4216-8c78-319a49de4b26 6c83f27236356f0c0a20439f39873fbc {"aliquot_tag": "ALQ_287d3d62", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02723.miRNA-Seq.S47_L005_R1.A C3N-02723 CCRCC miRNA-Seq tissue_normal CPT0176250009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGAAG_S47_L005_R1_001.unaln.bam 171291216 BAM S47_L005_R1 unaligned CPTAC3 fdacb0c5-c1fd-4348-864d-4cabd31902f7 fde93d213ebdaf055650fde3b1308737 {"aliquot_tag": "ALQ_9a5de172", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.miRNA-Seq.T.hg38 C3N-02723 CCRCC miRNA-Seq tumor CPT0176220009 987b69b7-1756-4c38-bf0f-48fb18af13de_mirnaseq_gdc_realn.bam 230806862 BAM harmonized CPTAC3 80d5beac-df81-4f9b-9fac-8dc94e7f7e7a 9665a16a2ae6e61df69c50bda735d362 {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor"} -C3N-02723.RNA-Seq.chimeric.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.chimeric.gdc_realn.bam 27745852 BAM chimeric harmonized CPTAC3 f22007fc-e8a6-4be0-8494-6c416992fc53 d8d7b6eb037735fb950c13a8252e5ad5 {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.RNA-Seq.chimeric.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.chimeric.gdc_realn.bam 29444514 BAM chimeric harmonized CPTAC3 8e73ff22-2f89-45dd-bfee-6d964670cb16 1fc2b3738e3e57d4c91d0cc85c4199d9 {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor"} -C3N-02723.RNA-Seq.genomic.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.genomic.gdc_realn.bam 7915146947 BAM genomic harmonized CPTAC3 7912e017-d152-453e-919b-375ce58ce05f b763aa666df051eaf0f34bbc04be7084 {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.RNA-Seq.genomic.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.genomic.gdc_realn.bam 6921319908 BAM genomic harmonized CPTAC3 919d0cd5-1eb4-4d34-afad-b8ffee752773 ba0821869618f808bcec7ff0fa54b3df {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor"} -C3N-02723.RNA-Seq.S18_L005_R1.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3178612142 FASTQ S18_L005_R1 unaligned CPTAC3 ad631a15-29ef-46cf-8097-83a519d38ca5 1f27db49e764aed9bae5dc10ba726a6d {"aliquot_tag": "ALQ_287d3d62", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02723.RNA-Seq.S18_L005_R2.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3316996449 FASTQ S18_L005_R2 unaligned CPTAC3 5f293b5e-b90e-4059-938d-ea17328d3681 8bac6bf75547e802c30750898e6fbd45 {"aliquot_tag": "ALQ_287d3d62", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02723.RNA-Seq.S8_L002_R1.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R1_001.fastq.gz 3534084095 FASTQ S8_L002_R1 unaligned CPTAC3 f256e9b6-50c3-4e92-9028-3f7c96ae79f2 8c72a8146e744d62f41ef9e6ce75cd9d {"aliquot_tag": "ALQ_9a5de172", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.RNA-Seq.S8_L002_R2.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R2_001.fastq.gz 3726325895 FASTQ S8_L002_R2 unaligned CPTAC3 f8f97778-37d0-4c46-b29b-203e9b4bbd13 b5a58f1b4ea7b6d1483d1ea54d114873 {"aliquot_tag": "ALQ_9a5de172", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.RNA-Seq.transcriptome.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.transcriptome.gdc_realn.bam 8763341527 BAM transcriptome harmonized CPTAC3 6f33a502-196e-465d-aa18-e8eb615c3b49 4f34f21ad379379517f3311b6381f397 {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.RNA-Seq.transcriptome.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.transcriptome.gdc_realn.bam 8640669824 BAM transcriptome harmonized CPTAC3 a3f34983-e22f-4a16-ab50-58fb4ee920e4 2821b1878bfebdcc8c67fa9989410863 {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor"} -C3N-02723.WGS.N C3N-02723 CCRCC WGS blood_normal CPT0176340002 CPT0176340002.WholeGenome.RP-1303.bam 103654504012 BAM aligned CPTAC3 244c32cf-2a6a-4aef-a36f-b94e5e62a99a 9463390a4db73fb1d2b5b1e3f7a13a7e {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-02723.WGS.N.hg38 C3N-02723 CCRCC WGS blood_normal CPT0176340002 f90c3f68-f919-476c-9f15-7347b79bb752_wgs_gdc_realn.bam 157477429627 BAM harmonized CPTAC3 0b99e49b-b94e-45ae-857c-48ac16d5734b 331bd446c8ec9895a41de916f742143f {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-02723.WGS.T C3N-02723 CCRCC WGS tumor CPT0176220006 CPT0176220006.WholeGenome.RP-1303.bam 113149926041 BAM aligned CPTAC3 1981c5ff-8bd8-4492-aca9-d8cb9e139543 53de93cf80f16761dfb189cbe97738e3 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor"} -C3N-02723.WGS.T.hg38 C3N-02723 CCRCC WGS tumor CPT0176220006 d423e9e0-da02-4195-8016-a23646f1e6fb_wgs_gdc_realn.bam 164865140495 BAM harmonized CPTAC3 7719d119-d95d-497b-907e-4b0ba2ed8463 4e9982958b16be094f71229b8e5f77c2 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor"} -C3N-02723.WXS.A C3N-02723 CCRCC WXS tissue_normal CPT0176250006 CPT0176250006.WholeExome.RP-1303.bam 35315032285 BAM aligned CPTAC3 52de7901-070e-4e2b-a65a-df063e21d7e6 758601901e1d3aeb29b27163babe749f {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.WXS.A.hg38 C3N-02723 CCRCC WXS tissue_normal CPT0176250006 564a5c3d-8328-458b-a67e-3df1bd8ff0f5_wxs_gdc_realn.bam 49064477789 BAM harmonized CPTAC3 078e3055-2173-4d7e-8e34-a5938dba5a1a 0134d07645ebb24773cdd446a080edd3 {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02723.WXS.N C3N-02723 CCRCC WXS blood_normal CPT0176340002 CPT0176340002.WholeExome.RP-1303.bam 24624261985 BAM aligned CPTAC3 800818e7-885b-4038-8b8c-b0cc20b8453d 9884b57165de1f8565f14017cdc3a1dc {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-02723.WXS.N.hg38 C3N-02723 CCRCC WXS blood_normal CPT0176340002 f90c3f68-f919-476c-9f15-7347b79bb752_wxs_gdc_realn.bam 33790244501 BAM harmonized CPTAC3 3ffe5fa4-7d4b-4d24-b738-02fe1630c49a 8126a4c46528f85b266e8fe9d462dc9b {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-02723.WXS.T C3N-02723 CCRCC WXS tumor CPT0176220006 CPT0176220006.WholeExome.RP-1303.bam 25926081401 BAM aligned CPTAC3 cc76abc3-e43d-4e42-a5b2-7021b87886c1 8f57a303afaf2266be968b44efc7be37 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor"} -C3N-02723.WXS.T.hg38 C3N-02723 CCRCC WXS tumor CPT0176220006 d423e9e0-da02-4195-8016-a23646f1e6fb_wxs_gdc_realn.bam 35353704938 BAM harmonized CPTAC3 bfd710b9-bc69-4ef9-9e3f-40f78fd10f50 26325e3f97069d950e34f62fb1dc9351 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor"} -C3N-02726.MethArray.Green.A C3N-02726 CCRCC Methylation_Array tissue_normal CPT0176430006 204930640041_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cfb2ea19-40b7-4ef0-9879-759f65781331 5a3ff009a8b9ec8d49bbcb863f604080 {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.MethArray.Green.T C3N-02726 CCRCC Methylation_Array tumor CPT0176400006 203219650169_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 32045597-49c1-489c-a2e1-578021488988 ac6c145f9a6076e67889f62d247b2d3b {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor"} -C3N-02726.MethArray.Red.A C3N-02726 CCRCC Methylation_Array tissue_normal CPT0176430006 204930640041_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 e48f5037-2000-419d-b4d2-87ce1a53d383 b27409ab006d06094027d68e4a9442df {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.MethArray.Red.T C3N-02726 CCRCC Methylation_Array tumor CPT0176400006 203219650169_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e685984c-dbf6-43e8-b0c8-ab9ac2232448 5141fdb4507a2bf04e27f0328151f8a3 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor"} -C3N-02726.miRNA-Seq.A.hg38 C3N-02726 CCRCC miRNA-Seq tissue_normal CPT0176430009 a4ce68d9-c359-4c11-b417-16a4b5b93976_mirnaseq_gdc_realn.bam 248879703 BAM harmonized CPTAC3 fe75653c-010b-41c3-be4e-669eba7b2b6e c7f8cc6dc8ee040754f3ca9d114d6479 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.miRNA-Seq.S30_L005_R1.T C3N-02726 CCRCC miRNA-Seq tumor CPT0176400009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L005_R1_001.unaln.bam 251857307 BAM S30_L005_R1 unaligned CPTAC3 651ec5b1-2a3d-4244-bfe9-dddf7ed27331 36345ba54815c34c2c015a915aed5661 {"aliquot_tag": "ALQ_84e48d1f", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02726.miRNA-Seq.S48_L005_R1.A C3N-02726 CCRCC miRNA-Seq tissue_normal CPT0176430009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGGCA_S48_L005_R1_001.unaln.bam 227713011 BAM S48_L005_R1 unaligned CPTAC3 44d93ee1-2cad-411e-a34f-5fab5ec39cd2 e62fcd30f1343d7aeaab524677bc55cd {"aliquot_tag": "ALQ_c344f7cf", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.miRNA-Seq.T.hg38 C3N-02726 CCRCC miRNA-Seq tumor CPT0176400009 800c19e6-48cb-4f63-b375-cf0ef713795b_mirnaseq_gdc_realn.bam 278128275 BAM harmonized CPTAC3 2400d11e-f497-4681-b72c-211bf6828a58 75059b417e60ed929f73a8d4e6f5f6a8 {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor"} -C3N-02726.RNA-Seq.chimeric.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.chimeric.gdc_realn.bam 34912458 BAM chimeric harmonized CPTAC3 9abb83b3-224d-4e6a-9618-d3373be64669 6977762bde1c0ccde6992d21d5d3ae93 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.RNA-Seq.chimeric.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.chimeric.gdc_realn.bam 29262918 BAM chimeric harmonized CPTAC3 0ea49e56-f252-4309-89dc-02196946fe18 2570f2f41a80d9a47b580a1baf6f80cc {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor"} -C3N-02726.RNA-Seq.genomic.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.genomic.gdc_realn.bam 9620370516 BAM genomic harmonized CPTAC3 2d04ee51-94d8-4e0c-b17a-e81c2479a6ad 9e054acb65623209890b2a44aa438446 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.RNA-Seq.genomic.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.genomic.gdc_realn.bam 6052356723 BAM genomic harmonized CPTAC3 129a6639-d301-4565-809a-ed69d0deba4f 359c84d8000478ed5fc112c8ff45942a {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor"} -C3N-02726.RNA-Seq.S17_L005_R1.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2874892214 FASTQ S17_L005_R1 unaligned CPTAC3 9f265f85-0ddc-4b43-8cb7-bb34b3c5d38a c03a2b8a737cf53dceb0e74e8087f2ca {"aliquot_tag": "ALQ_84e48d1f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02726.RNA-Seq.S17_L005_R2.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 3009425769 FASTQ S17_L005_R2 unaligned CPTAC3 988289b1-78bb-4f8b-8a9f-7aeb9f48f04b e504c92e87fa622170426d94f36c9576 {"aliquot_tag": "ALQ_84e48d1f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02726.RNA-Seq.S7_L002_R1.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R1_001.fastq.gz 4407306906 FASTQ S7_L002_R1 unaligned CPTAC3 13a1cfba-4d90-4fb7-888d-76e1686d23f6 29fe2c496d2ce1d64a8e5e3bc457d1a3 {"aliquot_tag": "ALQ_c344f7cf", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.RNA-Seq.S7_L002_R2.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R2_001.fastq.gz 4733610654 FASTQ S7_L002_R2 unaligned CPTAC3 dfe3363a-8d70-4edb-8497-13655ec491b6 31ed55e930fd55946338d412dfde6291 {"aliquot_tag": "ALQ_c344f7cf", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.RNA-Seq.transcriptome.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.transcriptome.gdc_realn.bam 11323050005 BAM transcriptome harmonized CPTAC3 e0227ae9-7658-49db-9ae1-d4392232989f 3d5132bc4ac5d5e3b1f360f2bde301d1 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.RNA-Seq.transcriptome.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.transcriptome.gdc_realn.bam 7388711096 BAM transcriptome harmonized CPTAC3 75403d9b-0e21-4dce-b8a4-240bdc801063 2af9ac0953f92eb062d2632d029cd28a {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor"} -C3N-02726.WGS.N C3N-02726 CCRCC WGS blood_normal CPT0176520002 CPT0176520002.WholeGenome.RP-1303.bam 52013834859 BAM aligned CPTAC3 120abf71-ed9a-4963-abc0-9e8eb02663ab e2a2792b4be9aee2cce10e78155723ae {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal"} -C3N-02726.WGS.N.hg38 C3N-02726 CCRCC WGS blood_normal CPT0176520002 686b4ba1-7506-4db8-b6dd-0596d99f6193_wgs_gdc_realn.bam 74975219505 BAM harmonized CPTAC3 958ba445-a554-433b-ade6-b30f4bb2298f bbb94aac8fe80b73d8e1fb55036ff367 {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal"} -C3N-02726.WGS.T C3N-02726 CCRCC WGS tumor CPT0176400006 CPT0176400006.WholeGenome.RP-1303.bam 108715168377 BAM aligned CPTAC3 e6f807c8-7747-40c7-9629-5d93b42aa102 aaeef6ffd817630354a087863d665bc6 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor"} -C3N-02726.WGS.T.hg38 C3N-02726 CCRCC WGS tumor CPT0176400006 fbb09331-d988-4569-b31a-20a539b963c3_wgs_gdc_realn.bam 157534681727 BAM harmonized CPTAC3 b8ce45e9-b777-49ed-8dca-19caf92a1419 cc6159b7792ba079adfe4d196f2d13cd {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor"} -C3N-02726.WXS.A C3N-02726 CCRCC WXS tissue_normal CPT0176430006 CPT0176430006.WholeExome.RP-1303.bam 22159262062 BAM aligned CPTAC3 8506881d-0b2a-475d-a2a1-bc49b8f63bc7 95e81be5b22cf0652df479646b56dfba {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.WXS.A.hg38 C3N-02726 CCRCC WXS tissue_normal CPT0176430006 3ff13b81-42cc-4e20-9923-a09b9b766dda_wxs_gdc_realn.bam 31503913230 BAM harmonized CPTAC3 ccafc43f-5a5a-4126-9e1e-0d01c02d9373 1bc4c5adabf8e28c1bc7c6c6f470bb9e {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02726.WXS.N C3N-02726 CCRCC WXS blood_normal CPT0176520002 CPT0176520002.WholeExome.RP-1303.bam 25334023469 BAM aligned CPTAC3 4ee00e19-ea78-4ef1-bf57-af56f223af2d 73880ed466ffbd47857af0281011ab8d {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal"} -C3N-02726.WXS.N.hg38 C3N-02726 CCRCC WXS blood_normal CPT0176520002 686b4ba1-7506-4db8-b6dd-0596d99f6193_wxs_gdc_realn.bam 35276807706 BAM harmonized CPTAC3 a3092dfe-01b9-48a1-9864-ac18fd512e34 e997bed7eb58138eb3a66487693e8ebd {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal"} -C3N-02726.WXS.T C3N-02726 CCRCC WXS tumor CPT0176400006 CPT0176400006.WholeExome.RP-1303.bam 21871332331 BAM aligned CPTAC3 3bfb8866-1440-4192-974d-b68826606f07 b10b41ffc196ca8a5470d8b18345bb97 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor"} -C3N-02726.WXS.T.hg38 C3N-02726 CCRCC WXS tumor CPT0176400006 fbb09331-d988-4569-b31a-20a539b963c3_wxs_gdc_realn.bam 30211959019 BAM harmonized CPTAC3 fc2f8339-8e74-45ba-b592-8cdcc7da458c 0c288be132a9e9ac02b62bbfdbc23678 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor"} -C3N-02727.miRNA-Seq.A.hg38 C3N-02727 HNSCC miRNA-Seq tissue_normal CPT0177730009 73c76f59-a12d-428e-bce5-535042996eff_mirnaseq_gdc_realn.bam 219795348 BAM harmonized CPTAC3 eefce99a-ccf4-4ce7-8a27-c63396fc027d 87aa8372c2036536c77910b12be58c71 {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.miRNA-Seq.S10_L001_R1.T C3N-02727 HNSCC miRNA-Seq tumor CPT0177700009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L001_R1_001.unaln.bam 268042821 BAM S10_L001_R1 unaligned CPTAC3 35baa34a-87b3-4441-8abb-ed9b57518b42 d3fe1d0f05fce9812236e023af7d87bf {"aliquot_tag": "ALQ_a407f405", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02727.miRNA-Seq.S46_L002_R1.A C3N-02727 HNSCC miRNA-Seq tissue_normal CPT0177730009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L002_R1_001.unaln.bam 188999597 BAM S46_L002_R1 unaligned CPTAC3 c4766cea-f434-4dbf-aefb-910ed6bce9a9 1cdd50975f1fe36c92ff723da4102569 {"aliquot_tag": "ALQ_e3a78ed5", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.miRNA-Seq.T.hg38 C3N-02727 HNSCC miRNA-Seq tumor CPT0177700009 d5884a2f-c56f-4ed2-b771-e937a53ba284_mirnaseq_gdc_realn.bam 290573212 BAM harmonized CPTAC3 15e18433-71b9-49b9-9053-878145aa5dd7 c7229c78db6d7076facf727de1c508d5 {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9967ddb5.miRNA-Seq.S46_L005_R1.T C3N-02727 HNSCC miRNA-Seq tumor CPT0177710009 190712_UNC32-K00270_0192_BH7HL3BBXY_GAGTGG_S46_L005_R1_001.unaln.bam 169359931 BAM S46_L005_R1 unaligned CPTAC3 bfc667b5-b647-4bde-aa7b-81b85667d9d7 c0846aec8566d913f884fa5ac91b9388 {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9967ddb5.miRNA-Seq.T.hg38 C3N-02727 HNSCC miRNA-Seq tumor CPT0177710009 10f0a2e5-7710-4060-a206-04462e45d8d8_mirnaseq_gdc_realn.bam 191095951 BAM harmonized CPTAC3 a6ab3cf3-fac1-4542-8c18-b83f04ae626e b4cc688698a08aa430be421484537a6d {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9967ddb5.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.chimeric.gdc_realn.bam 33869587 BAM chimeric harmonized CPTAC3 719fe3c9-b4b3-4b2f-ae64-cd3f51d5a4bd b1d0ebfa42d6099f06df79ec69000158 {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9967ddb5.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.genomic.gdc_realn.bam 8718704263 BAM genomic harmonized CPTAC3 cbed9719-64dd-4c31-9cf2-1a94f4f8fd00 789871d3316658a7eb32b373a6dc6bab {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9967ddb5.RNA-Seq.S16_L004_R1.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R1_001.fastq.gz 4186447836 FASTQ S16_L004_R1 unaligned CPTAC3 06bcb46c-5165-49cf-aaa8-e1cd7bc0e156 a82551d276c0b7d38ffcef43434fae0d {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9967ddb5.RNA-Seq.S16_L004_R2.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R2_001.fastq.gz 4554988535 FASTQ S16_L004_R2 unaligned CPTAC3 54804c92-509a-48fc-9a92-ab8b5376ce66 02b55cf1cc56654a482ef4612e37e9a1 {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9967ddb5.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.transcriptome.gdc_realn.bam 10860838075 BAM transcriptome harmonized CPTAC3 e18c1409-7b68-4628-af87-5906f95eba8e 3245049485e4b69c801569b819e6d4ee {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9d8c024.MethArray.Green.T C3N-02727 HNSCC Methylation_Array tumor CPT0177710006 203273630261_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 892868b5-1d49-440a-b094-587b2c8ef452 65889d0067bd6c8ebeba265b3ce47895 {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9d8c024.MethArray.Red.T C3N-02727 HNSCC Methylation_Array tumor CPT0177710006 203273630261_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 8ef49f20-2aec-410a-a36a-dbf8d99788f8 db7e22fc0548e9846c933f8e3705fcab {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9d8c024.WGS.T C3N-02727 HNSCC WGS tumor CPT0177710006 CPT0177710006.WholeGenome.RP-1303.bam 65160624693 BAM aligned CPTAC3 99a35606-a3ff-481f-835c-15c535b5a25e 397ab5f82f009505232906d591b03216 {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9d8c024.WGS.T.hg38 C3N-02727 HNSCC WGS tumor CPT0177710006 7d212c59-d44b-4209-baa1-4cc11d663cde_wgs_gdc_realn.bam 94309626912 BAM harmonized CPTAC3 6f023d6b-28c0-4dcf-aab9-67cc3da1bc46 42615a1df46446e70dd99d877cd17ccf {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9d8c024.WXS.T C3N-02727 HNSCC WXS tumor CPT0177710006 CPT0177710006.WholeExome.RP-1303.bam 24833035485 BAM aligned CPTAC3 3a0f4c9e-a962-48f0-81dd-6837bb2ef128 6c57e5c56ba8c85cee26e38cec66f234 {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.REP_9d8c024.WXS.T.hg38 C3N-02727 HNSCC WXS tumor CPT0177710006 7d212c59-d44b-4209-baa1-4cc11d663cde_wxs_gdc_realn.bam 34203568393 BAM harmonized CPTAC3 7f254a93-1d05-4de7-81e2-85a5c4218e85 cf7e9ed997a5b8ce99e1e63355833fef {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.chimeric.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.chimeric.gdc_realn.bam 78230818 BAM chimeric harmonized CPTAC3 ac539833-eb29-420e-b8ba-bb8f09645281 a3e2d27c07366c994d0e3bdc2e835928 {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.chimeric.gdc_realn.bam 256780105 BAM chimeric harmonized CPTAC3 c70980dd-8940-4a59-9ccd-bc6101df387c 872b928e620030a529e5916cfb9e629c {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.chimeric.gdc_realn.bam 24682695 BAM chimeric harmonized CPTAC3 c8129d5c-818b-4d8f-b8e0-20c5d813486e 85dc27f1aefcf0c8cc6d0ef8acecebb8 {"aliquot_tag": "ALQ_7b27c206", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.genomic.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.genomic.gdc_realn.bam 6297858825 BAM genomic harmonized CPTAC3 2288d359-4f22-4ae4-8f57-ad87c53d5afa 14d006aacd75efbd339c77f9afb3b282 {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.genomic.gdc_realn.bam 8437398397 BAM genomic harmonized CPTAC3 db77f422-a7cf-4674-9dc6-6bee23edeb36 88bca8a036c4a3cae97daecf4cdf9291 {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.genomic.gdc_realn.bam 3736119094 BAM genomic harmonized CPTAC3 5900553f-6bef-46ba-9c87-bf87dae42e07 a54f12b2c46e1cef94b6b2be1b869389 {"aliquot_tag": "ALQ_7b27c206", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.S11_L003_R1.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3866141877 FASTQ S11_L003_R1 unaligned CPTAC3 446b80eb-9e39-45f3-ac5c-cb7c01842aec 7f8934d6d2c834add624b59444ffecb6 {"aliquot_tag": "ALQ_a407f405", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.S11_L003_R2.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4192346139 FASTQ S11_L003_R2 unaligned CPTAC3 296ca088-9806-4f79-9cae-62bace29aa36 27ff77ec5e06961ca66112ee4dc42676 {"aliquot_tag": "ALQ_a407f405", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.S11_L008_R1.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R1_001.fastq.gz 2780571927 FASTQ S11_L008_R1 unaligned CPTAC3 683166fd-ecea-41f8-9eb3-fcb9c6b840c9 b006a4860a900417decb319bdbaccee5 {"aliquot_tag": "ALQ_e3a78ed5", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.RNA-Seq.S11_L008_R2.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R2_001.fastq.gz 2999648177 FASTQ S11_L008_R2 unaligned CPTAC3 19c13f02-2bf0-4c05-b145-17c1b5fa030f dfcea2dcdacfdc6b3a9f174b2ceeba7b {"aliquot_tag": "ALQ_e3a78ed5", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.RNA-Seq.S66_R1.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R1_001.fastq.gz 1987655032 FASTQ S66_R1 unaligned CPTAC3 d246e913-438e-471d-8398-6acb12ccfc3a 154dcebca10cd67c3541f5cc68e64842 {"aliquot_tag": "ALQ_7b27c206", "sample": "S66", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.S66_R2.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R2_001.fastq.gz 2129472712 FASTQ S66_R2 unaligned CPTAC3 a788bf2c-28f0-4041-a495-2f6c2ebbd67b b78159363e49302ae1533f3776cd7071 {"aliquot_tag": "ALQ_7b27c206", "sample": "S66", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.transcriptome.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.transcriptome.gdc_realn.bam 8510397771 BAM transcriptome harmonized CPTAC3 5bcd38b5-9bbe-4b2f-bdee-31e768c61431 705a2df3aa93404c261ab2bccb63dfbd {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.transcriptome.gdc_realn.bam 9798075402 BAM transcriptome harmonized CPTAC3 525ac003-f4f6-4a93-9bc0-6e7c4a7c18eb 5d5cab2c5ead0fe182d1de0bd943163f {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor"} -C3N-02727.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.transcriptome.gdc_realn.bam 2239670732 BAM transcriptome harmonized CPTAC3 c6a11ae0-60a4-4703-9335-0cb29cc2dedd cf19cc2d3dc6f60b9d15a08127818d35 {"aliquot_tag": "ALQ_7b27c206", "gdc_sample_type": "Primary Tumor"} -C3N-02727.WGS.N C3N-02727 HNSCC WGS blood_normal CPT0177820002 CPT0177820002.WholeGenome.RP-1303.bam 65291598979 BAM aligned CPTAC3 53d35c55-274d-4b75-97ee-90d349df4a51 b6118756ad07057051ccf999a3d11559 {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal"} -C3N-02727.WGS.N.hg38 C3N-02727 HNSCC WGS blood_normal CPT0177820002 e4e0a7a8-7b08-4410-85c6-b9bf8e6741ad_wgs_gdc_realn.bam 96179092735 BAM harmonized CPTAC3 534a92c0-65c8-4e42-a3bb-b673c4c0c952 a0b1049cb5497da327de4b35b0f30c7d {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal"} -C3N-02727.WXS.A C3N-02727 HNSCC WXS tissue_normal CPT0177730006 CPT0177730006.WholeExome.RP-1303.bam 45036632991 BAM aligned CPTAC3 cb63efb7-a3b1-457a-8e58-3875466072b6 2e9edd006076f15a546a6586d50270fe {"aliquot_tag": "ALQ_73189344", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.WXS.A.hg38 C3N-02727 HNSCC WXS tissue_normal CPT0177730006 77600803-d00f-41b1-a9d6-94639aa9ae4c_wxs_gdc_realn.bam 61968923683 BAM harmonized CPTAC3 033dd809-04d0-40c5-a173-991dddc8582c 43141cae0891141dd496018862fde030 {"aliquot_tag": "ALQ_73189344", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02727.WXS.N C3N-02727 HNSCC WXS blood_normal CPT0177820002 CPT0177820002.WholeExome.RP-1303.bam 28217401624 BAM aligned CPTAC3 a99684ae-ee3b-4caf-bd5c-10f3208198cf 04b3bb4e8d4b2380c7181d3f71686f0f {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal"} -C3N-02727.WXS.N.hg38 C3N-02727 HNSCC WXS blood_normal CPT0177820002 e4e0a7a8-7b08-4410-85c6-b9bf8e6741ad_wxs_gdc_realn.bam 39255452096 BAM harmonized CPTAC3 35952812-07f6-4892-853d-756808de65d2 a2458a2d4669c16c106afe3fdbaed54c {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal"} -C3N-02727.WXS.T C3N-02727 HNSCC WXS tumor CPT0177700006 CPT0177700006.WholeExome.RP-1303.bam 21422171772 BAM aligned CPTAC3 cb13f827-c4af-49fb-8311-222dc397cf94 44492eace13a6a66c8eb74da834d1622 {"aliquot_tag": "ALQ_34b8e994", "gdc_sample_type": "Primary Tumor"} -C3N-02727.WXS.T.hg38 C3N-02727 HNSCC WXS tumor CPT0177700006 73a9d41d-c6fb-492a-894f-597027e12089_wxs_gdc_realn.bam 29225087083 BAM harmonized CPTAC3 7e341e90-27ab-42b4-8870-307a9e9d67df 44147e65752ccec8303a5d6ea5891e9d {"aliquot_tag": "ALQ_34b8e994", "gdc_sample_type": "Primary Tumor"} -C3N-02728.MethArray.Green.A C3N-02728 LUAD Methylation_Array tissue_normal CPT0178990006 203220070157_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a2c200c1-a4ff-41f5-b802-84fea4e90afb 9a87a694cdc6c39bdbf0fc14a87d1b33 {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.MethArray.Green.T C3N-02728 LUAD Methylation_Array tumor CPT0178980006 203219670150_R08C01_Grn.idat 13676230 IDAT Green NA CPTAC3 8a61746c-b693-4028-9b61-7b10b0ac8c66 629de3e8e4812efb96fd47bb230d5a26 {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor"} -C3N-02728.MethArray.Red.A C3N-02728 LUAD Methylation_Array tissue_normal CPT0178990006 203220070157_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 d553cde2-dc70-47d2-ae11-bb387e65b646 71c773c638a85e3944cf548274081f2c {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.MethArray.Red.T C3N-02728 LUAD Methylation_Array tumor CPT0178980006 203219670150_R08C01_Red.idat 13676230 IDAT Red NA CPTAC3 22b0aa00-beae-4805-822e-ad8c39f21051 e9299e609091e63cdd55fe31361dbecc {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor"} -C3N-02728.miRNA-Seq.A.hg38 C3N-02728 LUAD miRNA-Seq tissue_normal CPT0178990009 f87afed6-2bca-4201-b0b4-b78db1e6cac1_mirnaseq_gdc_realn.bam 292988204 BAM harmonized CPTAC3 aa65cd45-6f62-4020-84df-a69178551345 46958f80b16508fa9e705adb738dc3c7 {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.miRNA-Seq.S15_L008_R1.A C3N-02728 LUAD miRNA-Seq tissue_normal CPT0178990009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L008_R1_001.unaln.bam 269935849 BAM S15_L008_R1 unaligned CPTAC3 f2a58ff5-88fe-4157-936e-0416efc61a87 78f6dd5a56c04b9a4e27d6ab4336a8a8 {"aliquot_tag": "ALQ_655587ed", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.miRNA-Seq.S44_L007_R1.T C3N-02728 LUAD miRNA-Seq tumor CPT0178980009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L007_R1_001.unaln.bam 241009318 BAM S44_L007_R1 unaligned CPTAC3 0a48cc93-2a3d-4bae-af7f-cccce2caedf4 8e564d88090a01d3c11d60e39b131f50 {"aliquot_tag": "ALQ_5835ae5d", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02728.miRNA-Seq.T.hg38 C3N-02728 LUAD miRNA-Seq tumor CPT0178980009 29dde79f-ad8f-4cfa-92ad-da7d3075e150_mirnaseq_gdc_realn.bam 260535843 BAM harmonized CPTAC3 75b5d14c-d0ab-4a80-a218-6f5d74130a38 074b079ecedb4cb72d42f32e74b3f602 {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor"} -C3N-02728.RNA-Seq.chimeric.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.chimeric.gdc_realn.bam 485300665 BAM chimeric harmonized CPTAC3 f30449d6-fc12-4ec1-afcb-877261056594 19917bcbfb2bb9a6379a7ca6df9aae89 {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.RNA-Seq.chimeric.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.chimeric.gdc_realn.bam 47627938 BAM chimeric harmonized CPTAC3 9514d3c2-1d81-4475-97ce-b643e8da05d6 5dd7760a4f9593016f1a63f9a62f0084 {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor"} -C3N-02728.RNA-Seq.genomic.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.genomic.gdc_realn.bam 8874175553 BAM genomic harmonized CPTAC3 526c5caf-56c9-4051-b6d6-b93cab1fdcfa 3fcfcea38fcb8822342bf9726857bcbf {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.RNA-Seq.genomic.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.genomic.gdc_realn.bam 8343152705 BAM genomic harmonized CPTAC3 7f3e03c5-2de2-4460-b457-280ed810613d 2850ff07fbf9a7838918ec05c1b423f3 {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor"} -C3N-02728.RNA-Seq.S11_L003_R1.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3857907449 FASTQ S11_L003_R1 unaligned CPTAC3 e1b82508-062d-403f-bb0b-478f4981c22c a6b8611b2ce9c1782d7fbda8ed7bec50 {"aliquot_tag": "ALQ_655587ed", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.RNA-Seq.S11_L003_R2.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 4248997114 FASTQ S11_L003_R2 unaligned CPTAC3 41014d3e-cd79-4d85-b627-b2e95da7f494 2186ddaa2a02a9addfa4ebc73c95b998 {"aliquot_tag": "ALQ_655587ed", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.RNA-Seq.S4_L001_R1.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3811397785 FASTQ S4_L001_R1 unaligned CPTAC3 b20387d6-e4c1-4305-ad92-9e379b8c9d64 0d9ca149be8f463ed1146aaf2c633b88 {"aliquot_tag": "ALQ_5835ae5d", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02728.RNA-Seq.S4_L001_R2.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4356572921 FASTQ S4_L001_R2 unaligned CPTAC3 20ee9b1a-a9fb-4c6a-8030-69eac3cd032a 243ef5e9271cec49bb6fd24e7e7e7ff4 {"aliquot_tag": "ALQ_5835ae5d", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02728.RNA-Seq.transcriptome.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.transcriptome.gdc_realn.bam 8895799505 BAM transcriptome harmonized CPTAC3 28e10b09-caca-4905-8e3c-2c2dcdd845db ec91d95e416e5a8b49812c44c3b0dc03 {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.RNA-Seq.transcriptome.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.transcriptome.gdc_realn.bam 7586485999 BAM transcriptome harmonized CPTAC3 7023aad6-f896-46c7-9c2d-729781472fc5 4f4f705fddc5fd1266448181de271b6d {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor"} -C3N-02728.WGS.N C3N-02728 LUAD WGS blood_normal CPT0179080002 CPT0179080002.WholeGenome.RP-1303.bam 109676169284 BAM aligned CPTAC3 0674c28c-bee8-4550-ba5f-6494ef38ce3f 1abdb24fae5d944a0b90d992aafe0ad9 {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02728.WGS.N.hg38 C3N-02728 LUAD WGS blood_normal CPT0179080002 dc701198-9ba3-4d3a-8bdd-237021bb43d7_wgs_gdc_realn.bam 158022893434 BAM harmonized CPTAC3 46a1e8bc-fefa-482a-9ad3-99c3befb6798 fa7c4226941c1725d10cab07fd828b26 {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02728.WGS.T C3N-02728 LUAD WGS tumor CPT0178980006 CPT0178980006.WholeGenome.RP-1303.bam 120412839562 BAM aligned CPTAC3 f73af00b-b882-4572-a745-3bfb8331a770 48024d63753ad4c90c47eeb357ee6a4b {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor"} -C3N-02728.WGS.T.hg38 C3N-02728 LUAD WGS tumor CPT0178980006 7f0ab742-8b67-446d-b46f-9f46e0c33160_wgs_gdc_realn.bam 172895847174 BAM harmonized CPTAC3 65765e12-3a02-442f-b146-2697c6174d4f 62f116c212c02d8371cd6ca6bd5f270d {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor"} -C3N-02728.WXS.A C3N-02728 LUAD WXS tissue_normal CPT0178990006 CPT0178990006.WholeExome.RP-1303.bam 21142020676 BAM aligned CPTAC3 019256f2-fa9b-46b3-9d48-5de4070efccb de333f2aeb87410870a6ab0b752553fe {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.WXS.A.hg38 C3N-02728 LUAD WXS tissue_normal CPT0178990006 e4cb67e9-3d83-4cfb-b75e-501720195dd7_wxs_gdc_realn.bam 29913246253 BAM harmonized CPTAC3 a59f033a-3c00-45f6-be51-fe6e3138e323 84741804d928e4b29e9406d63b027a38 {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02728.WXS.N C3N-02728 LUAD WXS blood_normal CPT0179080002 CPT0179080002.WholeExome.RP-1303.bam 27715694486 BAM aligned CPTAC3 1067781d-682a-43a4-a448-797c48f57724 09559a23c8bab1c8ee48f270e426ecd5 {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02728.WXS.N.hg38 C3N-02728 LUAD WXS blood_normal CPT0179080002 dc701198-9ba3-4d3a-8bdd-237021bb43d7_wxs_gdc_realn.bam 38540829129 BAM harmonized CPTAC3 7141d494-8fdd-4692-b090-cf99573aefc6 2cf4dce60c3c549697cc046d55afe6fa {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02728.WXS.T C3N-02728 LUAD WXS tumor CPT0178980006 CPT0178980006.WholeExome.RP-1303.bam 27125758375 BAM aligned CPTAC3 aa7494f3-25a0-44c1-9780-6c455328de64 b1fef711ebc2cde6a7d8edc21cf5c154 {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor"} -C3N-02728.WXS.T.hg38 C3N-02728 LUAD WXS tumor CPT0178980006 7f0ab742-8b67-446d-b46f-9f46e0c33160_wxs_gdc_realn.bam 37447188249 BAM harmonized CPTAC3 be5c26eb-ce72-4d4f-b33b-b91a2f7ce492 dcca3664e724a98b467a9216e7338d94 {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor"} -C3N-02729.MethArray.Green.A C3N-02729 LUAD Methylation_Array tissue_normal CPT0148300009 203219670122_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 15b5bb0d-db67-40d8-8c1e-bf63ffa2853c 1619161a4121c3d8d0a4a78058bf9cc7 {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.MethArray.Green.T C3N-02729 LUAD Methylation_Array tumor CPT0148280010 203219650065_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e58ca215-a58e-49f3-9ca8-d3ae9f3fdcee 0bd0189c2d61f65f28e613815d2b358c {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor"} -C3N-02729.MethArray.Red.A C3N-02729 LUAD Methylation_Array tissue_normal CPT0148300009 203219670122_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 639960d4-bb23-4996-94ce-fd0772fed099 39514a8a7770eae8cd262c9cc9c28f5a {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.MethArray.Red.T C3N-02729 LUAD Methylation_Array tumor CPT0148280010 203219650065_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 40ae96d3-5b18-46e7-b87e-eedcff45a2a6 db93063a19281039cbabe6649a5d936b {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor"} -C3N-02729.miRNA-Seq.A.hg38 C3N-02729 LUAD miRNA-Seq tissue_normal CPT0148300006 f4edecd8-c14c-4933-b772-f81fc27481c1_mirnaseq_gdc_realn.bam 251545554 BAM harmonized CPTAC3 533e6893-d3f7-4590-bcb7-402608e1be5a 7c3fce58f2c34fea3504a704cbae09b4 {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.miRNA-Seq.S23_L003_R1.T C3N-02729 LUAD miRNA-Seq tumor CPT0148280007 181108_UNC31-K00269_0162_AH255GBBXY_TCGAAG_S23_L003_R1_001.unaln.bam 242710609 BAM S23_L003_R1 unaligned CPTAC3 ca91d86e-1a07-41f6-8ed6-eb1cf210ae15 b9150d7c8a03ee1cff4da97e938c95b6 {"aliquot_tag": "ALQ_5bc5747a", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02729.miRNA-Seq.S6_L003_R1.A C3N-02729 LUAD miRNA-Seq tissue_normal CPT0148300006 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L003_R1_001.unaln.bam 224952342 BAM S6_L003_R1 unaligned CPTAC3 b54cf960-cc75-4b16-ad1b-8543710e5baa ab3825f90ecd9d97501aaa07440bba70 {"aliquot_tag": "ALQ_d7eedc88", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.miRNA-Seq.T.hg38 C3N-02729 LUAD miRNA-Seq tumor CPT0148280007 a3d87bf5-533b-47c1-9cd6-c30c24e04272_mirnaseq_gdc_realn.bam 263862892 BAM harmonized CPTAC3 cd03edc3-0e6d-4f95-be77-d24439da9980 3539da697311f08db77c7bdfcac23e1e {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor"} -C3N-02729.RNA-Seq.chimeric.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.chimeric.gdc_realn.bam 116434645 BAM chimeric harmonized CPTAC3 2ac7b213-5ba3-4fc5-8a8c-282a2cfe0910 64cc51ead322a81ab473053189da8efd {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.RNA-Seq.chimeric.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.chimeric.gdc_realn.bam 42366246 BAM chimeric harmonized CPTAC3 b91fa9a9-f5fb-413c-91a5-2ac1ee99988e e4594fa7e705ca6cbf3250cd5b94d8af {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor"} -C3N-02729.RNA-Seq.genomic.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.genomic.gdc_realn.bam 9940331865 BAM genomic harmonized CPTAC3 65ecc3ce-ccbe-4d94-93ec-8dc9631ec1d0 ba20b22048733250466d2093c7ecbdb8 {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.RNA-Seq.genomic.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.genomic.gdc_realn.bam 9776086786 BAM genomic harmonized CPTAC3 8cf805f8-dcba-47db-aa9c-f11547f07137 eb3916c9a67c0291818a8f3a50ab92da {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor"} -C3N-02729.RNA-Seq.S18_L005_R1.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4618954572 FASTQ S18_L005_R1 unaligned CPTAC3 21a4e2e2-229b-4fb0-b98b-68415b48b5bf fd2984c8ec1b5d44e73fe8a7e56e1e77 {"aliquot_tag": "ALQ_5bc5747a", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02729.RNA-Seq.S18_L005_R2.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 4871544234 FASTQ S18_L005_R2 unaligned CPTAC3 4f7cda8b-0750-471e-b10f-a3beb7cf8511 1850a521aac0c3f8da2e5fc5ea258866 {"aliquot_tag": "ALQ_5bc5747a", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02729.RNA-Seq.S3_L001_R1.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R1_001.fastq.gz 4709708927 FASTQ S3_L001_R1 unaligned CPTAC3 32fae9bd-f322-43cf-b966-7f945f6d815c bc0ac5880605ed51ce01cb15309b2a05 {"aliquot_tag": "ALQ_d7eedc88", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.RNA-Seq.S3_L001_R2.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R2_001.fastq.gz 5253045233 FASTQ S3_L001_R2 unaligned CPTAC3 2de00116-b2fe-422f-a628-c413cdd293c8 2d8dd9f424c045701554a99465790add {"aliquot_tag": "ALQ_d7eedc88", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.RNA-Seq.transcriptome.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.transcriptome.gdc_realn.bam 11605260004 BAM transcriptome harmonized CPTAC3 98761d74-1ebc-4b3f-90e2-8b2a4ee594ac a895bc68b7fe7df8de94533098536de9 {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.RNA-Seq.transcriptome.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.transcriptome.gdc_realn.bam 12001530207 BAM transcriptome harmonized CPTAC3 cda27bd7-0603-4234-8554-440056164573 781c92364bcee85eef1d60f2f8b15ec1 {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor"} -C3N-02729.WGS.A C3N-02729 LUAD WGS tissue_normal CPT0148300009 CPT0148300009.WholeGenome.RP-1303.bam 58815479840 BAM aligned CPTAC3 4e70ab4b-6e2c-4b8e-9d37-531c06d045da a8c8b348a1fa3a9db25dba508a854351 {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.WGS.A.hg38 C3N-02729 LUAD WGS tissue_normal CPT0148300009 4fa1d226-b5d3-4351-9f5e-b96922134dcf_wgs_gdc_realn.bam 85866861212 BAM harmonized CPTAC3 72606c03-8bc7-4f80-88d4-4b2e1bb62d57 dd48de684b66a2e322d77e802678bcdb {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.WGS.N C3N-02729 LUAD WGS blood_normal CPT0148310002 CPT0148310002.WholeGenome.RP-1303.bam 63693939631 BAM aligned CPTAC3 e783adbb-a108-4e33-8731-0708347d8e01 74102a854b3c5b5ab5327af3a6c01c60 {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02729.WGS.N.hg38 C3N-02729 LUAD WGS blood_normal CPT0148310002 b323a8a3-1853-41c7-b166-dfa3a1dbc32b_wgs_gdc_realn.bam 93463162539 BAM harmonized CPTAC3 30958cdc-5c72-413d-8ffe-6d3b55b38bc5 7b75abf1847812a3956d77af0174ab7a {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02729.WGS.T C3N-02729 LUAD WGS tumor CPT0148280010 CPT0148280010.WholeGenome.RP-1303.bam 63450055221 BAM aligned CPTAC3 d66bdad1-b5be-44ae-912a-38247a7cc685 331d767a01e216d91ccb5eec12a56256 {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor"} -C3N-02729.WGS.T.hg38 C3N-02729 LUAD WGS tumor CPT0148280010 a47247f3-753f-4e6f-820f-4c408ed60d32_wgs_gdc_realn.bam 92579133060 BAM harmonized CPTAC3 8a26cda2-7fab-4a4e-8c5d-1231900bf89d 194c0d3cda54d878439cdc3397be850c {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor"} -C3N-02729.WXS.A C3N-02729 LUAD WXS tissue_normal CPT0148300009 CPT0148300009.WholeExome.RP-1303.bam 23627270350 BAM aligned CPTAC3 6ae9f77c-709a-4295-a1e5-42806bf5ac8b 211e9bdcda3c0a8083d93342310e1b6e {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.WXS.A.hg38 C3N-02729 LUAD WXS tissue_normal CPT0148300009 4fa1d226-b5d3-4351-9f5e-b96922134dcf_wxs_gdc_realn.bam 32377813036 BAM harmonized CPTAC3 59abe3d4-3fd6-43a3-94c2-caf0e0047291 b985721d4afae2777eb4b7bebd529dbd {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02729.WXS.N C3N-02729 LUAD WXS blood_normal CPT0148310002 CPT0148310002.WholeExome.RP-1303.bam 32539022312 BAM aligned CPTAC3 9d84a8bf-1648-49dd-857d-c4dacdc01601 bb5203bf4fcb4e50b4442bc617bce8d6 {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02729.WXS.N.hg38 C3N-02729 LUAD WXS blood_normal CPT0148310002 b323a8a3-1853-41c7-b166-dfa3a1dbc32b_wxs_gdc_realn.bam 43416494427 BAM harmonized CPTAC3 17748956-bce7-4c4d-a6fe-725f2c7cc030 e23d113808c9e812723bc9df52491c13 {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02729.WXS.T C3N-02729 LUAD WXS tumor CPT0148280010 CPT0148280010.WholeExome.RP-1303.bam 24893784428 BAM aligned CPTAC3 a7451968-b30e-46d0-af3c-0725bf2c6de7 9779dca3af779e8e22f87101948617b3 {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor"} -C3N-02729.WXS.T.hg38 C3N-02729 LUAD WXS tumor CPT0148280010 a47247f3-753f-4e6f-820f-4c408ed60d32_wxs_gdc_realn.bam 34332633925 BAM harmonized CPTAC3 5f2ff26c-b856-4ec4-978d-a214595c88d2 ead4fc3d0c0be7ed97775eca02e6b15d {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor"} -C3N-02730.ANN_3381821b.MethArray.Green.T C3N-02730 HNSCC Methylation_Array tumor CPT0207870007 203281980233_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a37c8c8e-442e-4d4a-a04a-c857f41ef823 d75be2f190f5fb0b078f29ef1c33368d {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-02730.ANN_3381821b.MethArray.Red.T C3N-02730 HNSCC Methylation_Array tumor CPT0207870007 203281980233_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 90d1ff03-51d5-4e72-98ee-c79fff3e5135 22b5b45e5c0ff9a8c92c086a20fcfc97 {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-02730.ANN_3381821b.WGS.T C3N-02730 HNSCC WGS tumor CPT0207870007 CPT0207870007.WholeGenome.RP-1303.bam 60707914043 BAM aligned CPTAC3 84fa8e4d-90c4-4a72-aaf4-50ee5f678574 f07e3fa0d9948ac06eeddb9bc9195c15 {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-02730.ANN_3381821b.WGS.T.hg38 C3N-02730 HNSCC WGS tumor CPT0207870007 ac6a9fd3-ca87-4867-94ab-03056f12936a_wgs_gdc_realn.bam 87993457005 BAM harmonized CPTAC3 ec4fb12e-ccd3-46a1-8eae-877c0fbf1831 4fb32ec3011b1f69005d78e71352f97c {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-02730.ANN_3381821b.WXS.T C3N-02730 HNSCC WXS tumor CPT0207870007 CPT0207870007.WholeExome.RP-1303.bam 23614581238 BAM aligned CPTAC3 5767071e-3ec2-4107-ac66-a48505dcaeff 31fa7ce20515ffc1471e59cfcaa0057c {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-02730.ANN_3381821b.WXS.T.hg38 C3N-02730 HNSCC WXS tumor CPT0207870007 ac6a9fd3-ca87-4867-94ab-03056f12936a_wxs_gdc_realn.bam 32180334608 BAM harmonized CPTAC3 fb95b973-712c-4c79-ac6e-670018f48c16 e07b8af40a787dcb3cc099ff16358677 {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor"} -C3N-02730.ANN_7d3703f1.WGS.N C3N-02730 HNSCC WGS blood_normal CPT0207930002 CPT0207930002.WholeGenome.RP-1303.bam 76274780633 BAM aligned CPTAC3 80fc096b-71a5-41cb-80f4-8f5c6273e800 77072bd20dd05c052aaf18551b29103a {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-02730.ANN_7d3703f1.WGS.N.hg38 C3N-02730 HNSCC WGS blood_normal CPT0207930002 94f56b2c-3b64-4b92-b36c-8e095ce5d28d_wgs_gdc_realn.bam 114074944161 BAM harmonized CPTAC3 7256b713-103f-435d-8f1c-9910aa083afd 9a24efc063f12facea5e8d5388dd3732 {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-02730.ANN_7d3703f1.WXS.N C3N-02730 HNSCC WXS blood_normal CPT0207930002 CPT0207930002.WholeExome.RP-1303.bam 42027247122 BAM aligned CPTAC3 349ae85a-e9ca-4acc-9f93-6503548ea7fb 64238257dc660bf72ed265f2fb14c212 {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-02730.ANN_7d3703f1.WXS.N.hg38 C3N-02730 HNSCC WXS blood_normal CPT0207930002 94f56b2c-3b64-4b92-b36c-8e095ce5d28d_wxs_gdc_realn.bam 57911338150 BAM harmonized CPTAC3 100e34c1-170c-4dbd-ad63-de812aa9378a 0da7c8abf72b6c66541fe31f241fc67c {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal"} -C3N-02730.miRNA-Seq.S17_L003_R1.T C3N-02730 HNSCC miRNA-Seq tumor CPT0207870010 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L003_R1_001.unaln.bam 246676588 BAM S17_L003_R1 unaligned CPTAC3 f30694c8-f9ff-40f9-b0d2-1c05b81ddeac 0a99e2e461d2b2af668e598195fae4d2 {"aliquot_tag": "ALQ_b4fe26f9", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02730.miRNA-Seq.T.hg38 C3N-02730 HNSCC miRNA-Seq tumor CPT0207870010 486b5628-2ec1-4232-b9e9-3ad21e3d6efd_mirnaseq_gdc_realn.bam 272887972 BAM harmonized CPTAC3 21819938-2e92-415c-a2a6-0d534bc4cf39 d260551694bf48f5d1aba0c781a5086d {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor"} -C3N-02730.RNA-Seq.chimeric.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.chimeric.gdc_realn.bam 336773960 BAM chimeric harmonized CPTAC3 9a6650b7-56d9-44b8-882f-e568ea470fa5 e4deb7582aa8d0295ea477f1d4d6c868 {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor"} -C3N-02730.RNA-Seq.genomic.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.genomic.gdc_realn.bam 8924912052 BAM genomic harmonized CPTAC3 d59ba3a5-9501-4242-8e4e-a5aafadb97b7 6845ff44804cdccca8f3d3707ba49e48 {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor"} -C3N-02730.RNA-Seq.S7_L008_R1.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R1_001.fastq.gz 3945936473 FASTQ S7_L008_R1 unaligned CPTAC3 0a9da540-489a-45dd-919c-e7962460dc8b 8609f8789cf05ba11188d015ae523a83 {"aliquot_tag": "ALQ_b4fe26f9", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02730.RNA-Seq.S7_L008_R2.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R2_001.fastq.gz 4699034398 FASTQ S7_L008_R2 unaligned CPTAC3 0ee7c388-3057-4e07-afb9-84ece3aaea54 a0c9bd7b8a208cbd6318434a4a39160c {"aliquot_tag": "ALQ_b4fe26f9", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02730.RNA-Seq.transcriptome.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.transcriptome.gdc_realn.bam 11543110949 BAM transcriptome harmonized CPTAC3 9fd9cd27-44f9-4df7-9162-fbe2d9143f39 b6c53d25ea16e65a5de0fdc7d798e942 {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor"} -C3N-02754.ANN_7b2645c2.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.chimeric.gdc_realn.bam 261064318 BAM chimeric harmonized CPTAC3 679c02d9-ec7d-4edb-a20b-4c9df8a759a8 9b86466044f20cf3a171eb3f50b05c94 {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.ANN_7b2645c2.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.genomic.gdc_realn.bam 11326125338 BAM genomic harmonized CPTAC3 0c1615e9-4d03-44d1-84ef-eb01cb3524d7 9486731db5072ee9f090c40806fa550b {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.ANN_7b2645c2.RNA-Seq.S4_L006_R1.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R1_001.fastq.gz 3957470951 FASTQ S4_L006_R1 unaligned CPTAC3 03aaf392-5fdd-4d5e-ad97-60c83afddd7f 905a737a0d4d2fb79fdc648c0bc26d46 {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02754.ANN_7b2645c2.RNA-Seq.S4_L006_R2.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R2_001.fastq.gz 4464592514 FASTQ S4_L006_R2 unaligned CPTAC3 821f4055-a8c6-4d89-8d28-0ef2b9a4f43d 74dfd9a890230ab233863336a92962c5 {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02754.ANN_7b2645c2.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.transcriptome.gdc_realn.bam 10499728196 BAM transcriptome harmonized CPTAC3 3e2152ac-c577-4e19-8d7a-a2c21ac9caa9 3db743fd2c10a59143dc06daca9a574c {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_19d053f2.WXS.N C3N-02754 PDA WXS blood_normal CPT0183910002 CPT0183910002.WholeExome.RP-1303.bam 46264227546 BAM aligned CPTAC3 afe77d77-ad47-44cc-8b31-bcb8e10b36d8 73b020fa0490dcc479c05aadbf804b1a {"aliquot_tag": "DUP_19d053f2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02754.DUP_19d053f2.WXS.N.hg38 C3N-02754 PDA WXS blood_normal CPT0183910002 f68d0426-1853-4360-9855-675a07b73fd1_wxs_gdc_realn.bam 63996240523 BAM harmonized CPTAC3 c2310b6d-e8f0-4f16-99d0-2c74edf41bc5 d7952fea90d753f6290efd5828d569cf {"aliquot_tag": "DUP_19d053f2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02754.DUP_4360e393.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.chimeric.gdc_realn.bam 565206889 BAM chimeric harmonized CPTAC3 07504c54-b5fc-4e88-8bac-7427e4e6f6fd dde4fe2f23dfa9df751ecbffa334f74e {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_4360e393.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.genomic.gdc_realn.bam 8030680977 BAM genomic harmonized CPTAC3 e027e760-132c-4c58-b996-cceee4b017ec 41738bc6c17050ff37a68bcae1380087 {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_4360e393.RNA-Seq.S20_L006_R1.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R1_001.fastq.gz 3709732207 FASTQ S20_L006_R1 unaligned CPTAC3 02f37a94-0c53-4e40-9295-d1350a36608a 8b6cd00eabedeadebbdd2558cac6c6f8 {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_4360e393.RNA-Seq.S20_L006_R2.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R2_001.fastq.gz 3917825948 FASTQ S20_L006_R2 unaligned CPTAC3 108e8b34-73a3-47ee-bd45-11ba0073b59e 72d169513e5e18e5d3991cd483cde375 {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_4360e393.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.transcriptome.gdc_realn.bam 9751340580 BAM transcriptome harmonized CPTAC3 47d8ead2-800e-405d-b539-fb77042be2e7 b75180faeefee7400f3a2ee959b67a9b {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_718ce22d.RNA-Seq.chimeric.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.chimeric.gdc_realn.bam 493706173 BAM chimeric harmonized CPTAC3 1c5db054-a8f6-49d4-b795-79d1401b0650 40da14bd9a7504e537788ab441229178 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02754.DUP_718ce22d.RNA-Seq.genomic.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.genomic.gdc_realn.bam 9851418426 BAM genomic harmonized CPTAC3 06afa2fb-e3e2-4a6c-888e-b0029f21ff90 4364f3b3b5d84143eed0f597f27ce7bc {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02754.DUP_718ce22d.RNA-Seq.S16_L004_R1.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4087946988 FASTQ S16_L004_R1 unaligned CPTAC3 b7ba22fa-f51a-4e7c-805b-9b9ddf71cc60 432b18ea146d45fe07a28632f1ebac78 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02754.DUP_718ce22d.RNA-Seq.S16_L004_R2.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 4465191159 FASTQ S16_L004_R2 unaligned CPTAC3 eee114a4-c849-41bc-bc0b-170172f63544 a4246e6fed57e65000f45607bfab5994 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02754.DUP_718ce22d.RNA-Seq.transcriptome.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.transcriptome.gdc_realn.bam 9558121394 BAM transcriptome harmonized CPTAC3 f4d105f5-0f96-45bb-9752-f5f78fcb5cab 8e13fd22333077e8c6626f77cfb62d49 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02754.DUP_7c4b81db.WXS.T C3N-02754 PDA WXS tumor CPT0183850037 CPT0183850037.WholeExome.RP-1303.bam 22401445307 BAM aligned CPTAC3 075bd658-411c-43a1-8511-84071cdd8ddb d2618135af43e21171135997c9e2039a {"aliquot_tag": "DUP_7c4b81db", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_7c4b81db.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850037 843d78c3-420d-4bfb-8b5b-5ddcac5ecdf7_wxs_gdc_realn.bam 31661583964 BAM harmonized CPTAC3 a22d0be0-06b9-4d90-9a78-ca9c549017f6 9a9527bb933c961850746648bd2fc2a8 {"aliquot_tag": "DUP_7c4b81db", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_9245e0f7.WXS.T C3N-02754 PDA WXS tumor CPT0183850035 CPT0183850035.WholeExome.RP-1303.bam 39693617631 BAM aligned CPTAC3 ffc47d8c-c0bf-47ad-9d9b-3c0ec520f216 1355518509cbc3a0eafbb821842f823e {"aliquot_tag": "DUP_9245e0f7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_9245e0f7.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850035 ae3d946d-820e-4bb3-a056-c339282f49a5_wxs_gdc_realn.bam 55982343240 BAM harmonized CPTAC3 3f9856b2-b05a-4799-9230-d4507e033e53 58a1d04f976ea08b6d9ab4cf9080563f {"aliquot_tag": "DUP_9245e0f7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_b4cb14d.WXS.T C3N-02754 PDA WXS tumor CPT0183850036 CPT0183850036.WholeExome.RP-1303.bam 28449596643 BAM aligned CPTAC3 b69b6761-e422-450b-923d-79a87678f55e a5427fe6a1e6808067777ffbf250e64c {"aliquot_tag": "DUP_b4cb14d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_b4cb14d.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850036 ac4a8e84-c4ae-4b8c-b872-beea3c45fb65_wxs_gdc_realn.bam 38748918776 BAM harmonized CPTAC3 de5a7db9-1fd5-4154-ba79-437029d0a6dd 7745b68bd0e7c2879f109fc324e48360 {"aliquot_tag": "DUP_b4cb14d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_dd047630.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.chimeric.gdc_realn.bam 497808158 BAM chimeric harmonized CPTAC3 06e7c4a4-a1b9-40ba-a576-f297193f5886 b03be25b70402ec9c20e6858e0a985f1 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_dd047630.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.genomic.gdc_realn.bam 7288102404 BAM genomic harmonized CPTAC3 db192c3b-9a76-406b-a04d-cc22d6f55653 2bae68a26311b432275610cd13cb4229 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_dd047630.RNA-Seq.S14_L004_R1.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 3158735118 FASTQ S14_L004_R1 unaligned CPTAC3 0e9f4531-da97-4af8-890e-e08f34f36220 7ac6b445f322c952558f4c678b1560ec {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_dd047630.RNA-Seq.S14_L004_R2.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 3453435097 FASTQ S14_L004_R2 unaligned CPTAC3 8471959f-8d39-484b-8c4c-d30ef5961985 80058a53dd033a8701b7cc16502089b6 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02754.DUP_dd047630.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.transcriptome.gdc_realn.bam 7874163783 BAM transcriptome harmonized CPTAC3 f442be27-a4c8-4290-861c-99afeb5ffb43 6d1cde2e5c823c72c2d13b6838c2dfd5 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02757.MethArray.Green.A C3N-02757 LUAD Methylation_Array tissue_normal CPT0183960006 203028200100_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 39a494fe-695f-4cd3-a5cd-4df3cc50625b 3dada41ddcdf117c4f4ea0171e8b0120 {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.MethArray.Green.T C3N-02757 LUAD Methylation_Array tumor CPT0183940007 203219650177_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 09af74c8-f13f-440e-89be-7f3cbabc3bfd ee81d572b394fc9276e2fe315b0b5931 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor"} -C3N-02757.MethArray.Red.A C3N-02757 LUAD Methylation_Array tissue_normal CPT0183960006 203028200100_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 ab7a09e7-d597-4400-ba2b-362b3303afcb b905e0b88466ee7b945612c3aeeabac0 {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.MethArray.Red.T C3N-02757 LUAD Methylation_Array tumor CPT0183940007 203219650177_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 7df128b3-aeac-4eac-8e0c-872e93a42820 91e9657f699fc2ab5168b096db8fdf43 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor"} -C3N-02757.miRNA-Seq.A.hg38 C3N-02757 LUAD miRNA-Seq tissue_normal CPT0183960009 e9a2268a-c44f-4bef-95c6-090c983f115f_mirnaseq_gdc_realn.bam 265924767 BAM harmonized CPTAC3 932f2c25-5271-40f4-b527-e3903ae2a7f7 2132057720a1608c0aa0d98e6aca55ae {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.miRNA-Seq.S13_L004_R1.A C3N-02757 LUAD miRNA-Seq tissue_normal CPT0183960009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L004_R1_001.unaln.bam 240646051 BAM S13_L004_R1 unaligned CPTAC3 1efc2b07-2ec2-4e50-bb06-1686ab5f15e0 8dfb1703cb996277af391184f0444f1e {"aliquot_tag": "ALQ_3c22566a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.miRNA-Seq.S24_L007_R1.T C3N-02757 LUAD miRNA-Seq tumor CPT0183940010 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L007_R1_001.unaln.bam 208393211 BAM S24_L007_R1 unaligned CPTAC3 e973aa42-0bb2-4a5e-8479-55623bb4d2b6 ecb342c93c3a61bd60d9e1f48ce6232f {"aliquot_tag": "ALQ_26258cef", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02757.miRNA-Seq.T.hg38 C3N-02757 LUAD miRNA-Seq tumor CPT0183940010 7287ae53-cd42-40b9-83c9-d21c6421eeac_mirnaseq_gdc_realn.bam 225774645 BAM harmonized CPTAC3 2b656152-02d5-491a-ac4e-78559508cc28 35b3cf73897852a266745751f99aeb4e {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor"} -C3N-02757.RNA-Seq.chimeric.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.chimeric.gdc_realn.bam 42395275 BAM chimeric harmonized CPTAC3 1eff8dbd-e758-4e79-8203-6342e9bdc10c 38ca8fd1fa64a9b0d7478c4534f5311d {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.RNA-Seq.chimeric.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.chimeric.gdc_realn.bam 41484467 BAM chimeric harmonized CPTAC3 d062c2ec-a4d0-4379-b6ef-6a37af822b8a 76c9a78876eec1be07bb5db1c48f9295 {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor"} -C3N-02757.RNA-Seq.genomic.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.genomic.gdc_realn.bam 8761427203 BAM genomic harmonized CPTAC3 576a65e7-1d54-4a85-bf3d-d1bee800523b f0c0fecf244e4aee1f557d1017ae563c {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.RNA-Seq.genomic.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.genomic.gdc_realn.bam 8762886714 BAM genomic harmonized CPTAC3 0fcd0843-79ed-4bfe-a7a6-4a40795a2b55 51eb93ebd4c752a5dc2682da5c80c8b2 {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor"} -C3N-02757.RNA-Seq.S4_L001_R1.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4049003402 FASTQ S4_L001_R1 unaligned CPTAC3 25827a14-b2ad-41fb-b8dd-6768b623caf1 ca1672b4ed1135a53b361a6d8f832baf {"aliquot_tag": "ALQ_3c22566a", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.RNA-Seq.S4_L001_R2.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4368896323 FASTQ S4_L001_R2 unaligned CPTAC3 bdd23eab-0f72-4c4e-aacb-24b6eaba8131 62b0999b9aa9e524460fae3eb5c12a81 {"aliquot_tag": "ALQ_3c22566a", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.RNA-Seq.S6_L002_R1.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4010947559 FASTQ S6_L002_R1 unaligned CPTAC3 511c6e23-9d06-4168-9d02-99fb2a748947 2f46949c2da7ca4fcc142014c7edf52e {"aliquot_tag": "ALQ_26258cef", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02757.RNA-Seq.S6_L002_R2.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4325395313 FASTQ S6_L002_R2 unaligned CPTAC3 3f00c79a-19e8-4faf-ad11-34dab3add995 d6362cb3c264e3cdc3c68191804b0e95 {"aliquot_tag": "ALQ_26258cef", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02757.RNA-Seq.transcriptome.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.transcriptome.gdc_realn.bam 11169638822 BAM transcriptome harmonized CPTAC3 6723b6d3-bd49-4b6f-93d5-98038ac091fd c6766d989f01fc730ed0cfeaaef242ec {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.RNA-Seq.transcriptome.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.transcriptome.gdc_realn.bam 9419721038 BAM transcriptome harmonized CPTAC3 d619d0f8-5180-4e05-bc11-af755cd38d64 39d53a11afb5f0ad789c2124aa3b0631 {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor"} -C3N-02757.WGS.N C3N-02757 LUAD WGS blood_normal CPT0184000002 CPT0184000002.WholeGenome.RP-1303.bam 55078150347 BAM aligned CPTAC3 c33094cd-a08b-4e2f-89a9-22decba73274 09b4eece50d53e21c3571bf34652b529 {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal"} -C3N-02757.WGS.N.hg38 C3N-02757 LUAD WGS blood_normal CPT0184000002 1d3373a4-7c6e-4b32-8c95-5c5d13732f8f_wgs_gdc_realn.bam 79860273318 BAM harmonized CPTAC3 968912ef-7aff-4502-84d1-0e624131de72 473272ee7ad13cf94f61291525d05d9c {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal"} -C3N-02757.WGS.T C3N-02757 LUAD WGS tumor CPT0183940007 CPT0183940007.WholeGenome.RP-1303.bam 125566658657 BAM aligned CPTAC3 5f210d4a-38eb-41b7-807b-ff4e2a973f10 ee9eba6b5ee2f464d32d4fc50d61ff38 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor"} -C3N-02757.WGS.T.hg38 C3N-02757 LUAD WGS tumor CPT0183940007 01b72768-f8ec-487d-9c45-6c61b9b61f4f_wgs_gdc_realn.bam 180098716615 BAM harmonized CPTAC3 05a30cbb-bf33-4c84-abaf-d5909fa711c9 09cf93160c33217e6997fb60aae57f00 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor"} -C3N-02757.WXS.A C3N-02757 LUAD WXS tissue_normal CPT0183960006 CPT0183960006.WholeExome.RP-1303.bam 22971198139 BAM aligned CPTAC3 51454d13-802b-4107-a006-2715764bd979 dff65f45f99cc88a424cdcf6715cfca0 {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.WXS.A.hg38 C3N-02757 LUAD WXS tissue_normal CPT0183960006 0b14a209-d7fb-431d-a7c8-a7c4e0a1af2d_wxs_gdc_realn.bam 31060707478 BAM harmonized CPTAC3 1e025245-8b7c-41dc-8a32-62f4de568447 5999723e15341237188cdcd343c581ab {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02757.WXS.N C3N-02757 LUAD WXS blood_normal CPT0184000002 CPT0184000002.WholeExome.RP-1303.bam 23129115965 BAM aligned CPTAC3 b791d3ea-1d61-4c29-af20-7df232b7a34a f38538296d2cc648252cbc7c054229c6 {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal"} -C3N-02757.WXS.N.hg38 C3N-02757 LUAD WXS blood_normal CPT0184000002 1d3373a4-7c6e-4b32-8c95-5c5d13732f8f_wxs_gdc_realn.bam 31848544315 BAM harmonized CPTAC3 d298a4fd-d84a-4353-8edb-bf285b0608aa 8616898ef9b57cc0f7e50cc46091e32d {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal"} -C3N-02757.WXS.T C3N-02757 LUAD WXS tumor CPT0183940007 CPT0183940007.WholeExome.RP-1303.bam 25455502287 BAM aligned CPTAC3 216b4634-87cb-4d40-8562-4f47c4c9bd28 d72413f4ab5c135a93ebc6177c064f51 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor"} -C3N-02757.WXS.T.hg38 C3N-02757 LUAD WXS tumor CPT0183940007 01b72768-f8ec-487d-9c45-6c61b9b61f4f_wxs_gdc_realn.bam 34740232079 BAM harmonized CPTAC3 f5940ec8-4b9f-4a4b-b045-7d3150619951 e7ba9ec9471e8b3f1ba28c62604bb5d0 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor"} -C3N-02758.MethArray.Green.A C3N-02758 LUAD Methylation_Array tissue_normal CPT0184060006 203219670141_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7eff8ade-d92e-45a3-8ea7-9100149b7d7f fd0c16dcc41eb4fd30e6dc127f94d92b {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.MethArray.Green.T C3N-02758 LUAD Methylation_Array tumor CPT0184040007 203220070217_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 656efa01-9f06-47a0-a180-4ef2ef238678 47e40ad98d938aac2f65f703b1c00cd5 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor"} -C3N-02758.MethArray.Red.A C3N-02758 LUAD Methylation_Array tissue_normal CPT0184060006 203219670141_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3bce2e95-a142-49ff-845f-259eaf31b5ee 77dc6b83729072a1d7ef8d108c6efedc {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.MethArray.Red.T C3N-02758 LUAD Methylation_Array tumor CPT0184040007 203220070217_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 2b82f2d1-2803-49e1-bbab-4c966fd7cb44 435458e95edbfe1c5afe88afce53ff15 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor"} -C3N-02758.miRNA-Seq.A.hg38 C3N-02758 LUAD miRNA-Seq tissue_normal CPT0184060009 e0a1786a-13de-4b8a-bbf4-6265b75df6c9_mirnaseq_gdc_realn.bam 196932309 BAM harmonized CPTAC3 eed0533b-d330-4977-8c60-fffca12ee7d9 c0adf6826034b157a4f24431a55b3edf {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.miRNA-Seq.S35_L007_R1.T C3N-02758 LUAD miRNA-Seq tumor CPT0184040010 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L007_R1_001.unaln.bam 242404839 BAM S35_L007_R1 unaligned CPTAC3 162906f3-34d6-4d09-bfa8-789af26cd4c1 ce3db5922578105821d56bb3361c3cab {"aliquot_tag": "ALQ_c48de3a9", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02758.miRNA-Seq.S6_L008_R1.A C3N-02758 LUAD miRNA-Seq tissue_normal CPT0184060009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L008_R1_001.unaln.bam 178879055 BAM S6_L008_R1 unaligned CPTAC3 926eab70-03dc-41fc-816e-5b78adcfc024 356ec19b81c10a2358645d2883c45c43 {"aliquot_tag": "ALQ_de8a392c", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.miRNA-Seq.T.hg38 C3N-02758 LUAD miRNA-Seq tumor CPT0184040010 bf15b20a-18a1-49b3-9cc8-82595425d8de_mirnaseq_gdc_realn.bam 265237117 BAM harmonized CPTAC3 bc4950cf-21fc-4101-9129-b01a3b4e891c e57b47930f048689b9be3ff8b7542e19 {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor"} -C3N-02758.RNA-Seq.chimeric.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.chimeric.gdc_realn.bam 368282589 BAM chimeric harmonized CPTAC3 9cf40df9-a76e-480d-b793-ce4a332f5e04 27df2b33b1a1aeb17af4a6a47a81c106 {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.RNA-Seq.chimeric.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.chimeric.gdc_realn.bam 54666016 BAM chimeric harmonized CPTAC3 b239c5f2-6924-45f9-8583-f8d067c8c5ff c4114776ac4501dd3a582c93501646eb {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor"} -C3N-02758.RNA-Seq.genomic.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.genomic.gdc_realn.bam 8931842697 BAM genomic harmonized CPTAC3 de5fa054-86ee-45a1-8bd5-8985962ff0ee 574a6c2b1fc32219a79d59686ac753bc {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.RNA-Seq.genomic.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.genomic.gdc_realn.bam 9935531951 BAM genomic harmonized CPTAC3 e10ebba3-fb4f-46ff-b00c-635254cf16f7 ddf85a4a8cbf95660c6788e8c3421455 {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor"} -C3N-02758.RNA-Seq.S3_L008_R1.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R1_001.fastq.gz 3802919682 FASTQ S3_L008_R1 unaligned CPTAC3 d1c4f1d6-a577-42ca-aa53-d2b33c30c575 6ee90ecbabbc0d14ed01d08417a25164 {"aliquot_tag": "ALQ_de8a392c", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.RNA-Seq.S3_L008_R2.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R2_001.fastq.gz 4225377601 FASTQ S3_L008_R2 unaligned CPTAC3 c5d599ab-174b-4a33-897c-42616b24ebf5 e342a870c99196af08f304f7e0d780a5 {"aliquot_tag": "ALQ_de8a392c", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.RNA-Seq.S8_L002_R1.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4416157129 FASTQ S8_L002_R1 unaligned CPTAC3 46f20b1d-f087-43d0-a706-312864f2bb2d 39891ab0f1a3a4ea093969cca8a184c4 {"aliquot_tag": "ALQ_c48de3a9", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02758.RNA-Seq.S8_L002_R2.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 5020616367 FASTQ S8_L002_R2 unaligned CPTAC3 fd7cde66-28d7-4004-8c4c-c10ff1681c6a 2bbead0e27f9e8cdd91c3e9e706fb441 {"aliquot_tag": "ALQ_c48de3a9", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02758.RNA-Seq.transcriptome.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.transcriptome.gdc_realn.bam 8499803193 BAM transcriptome harmonized CPTAC3 40e9c353-260e-4e0f-a729-d09abd4a2573 7b327965dedacf5e2390a69e43e2abae {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.RNA-Seq.transcriptome.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.transcriptome.gdc_realn.bam 10156671059 BAM transcriptome harmonized CPTAC3 e404ae6c-e1aa-4ff3-83de-753d3e1f08ee d7bd7de419d362dca3f31bd5f353681a {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor"} -C3N-02758.WGS.N C3N-02758 LUAD WGS blood_normal CPT0184100002 CPT0184100002.WholeGenome.RP-1303.bam 54245059817 BAM aligned CPTAC3 a596b2c4-406a-4f01-93fc-7e426ecddd6c ec79261dae031ce529a06100288dd509 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02758.WGS.N.hg38 C3N-02758 LUAD WGS blood_normal CPT0184100002 05fdd306-6939-4645-b421-896b80d20cc7_wgs_gdc_realn.bam 78545686844 BAM harmonized CPTAC3 36d5e66c-eb4b-4e07-bd17-0eb4cdc08dde 681e3272e25a5173238c1cd1b5c270d1 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02758.WGS.T C3N-02758 LUAD WGS tumor CPT0184040007 CPT0184040007.WholeGenome.RP-1303.bam 118725639041 BAM aligned CPTAC3 05dc4d7e-8dcf-4f52-84ea-7f31ca92b436 cb5c2d2d4827fcd4b1af527199f56218 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor"} -C3N-02758.WGS.T.hg38 C3N-02758 LUAD WGS tumor CPT0184040007 aa3c1897-0ed9-472d-a378-97ccfabcbd13_wgs_gdc_realn.bam 174417856508 BAM harmonized CPTAC3 f512018c-3737-4cc4-b55d-082e29c91b96 ceb3aafa803ad698757384078d303f57 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor"} -C3N-02758.WXS.A C3N-02758 LUAD WXS tissue_normal CPT0184060006 CPT0184060006.WholeExome.RP-1303.bam 24562757364 BAM aligned CPTAC3 3ce6e114-5948-4c96-9cd0-59e0d7cc4b3e 364b62e061df35b4f7b5338d507e9377 {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.WXS.A.hg38 C3N-02758 LUAD WXS tissue_normal CPT0184060006 8bf8e25a-a8a7-4c73-a125-5741fecfb264_wxs_gdc_realn.bam 33750924410 BAM harmonized CPTAC3 5ec60580-36d0-4b8d-bbd9-49012b8a871e be010a71faf1b1c4cfd4981f5c232213 {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02758.WXS.N C3N-02758 LUAD WXS blood_normal CPT0184100002 CPT0184100002.WholeExome.RP-1303.bam 29546828788 BAM aligned CPTAC3 3858a92d-082d-4e3b-a629-f2c5f8231e25 3099d318fca07c55b32fea12f7552679 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02758.WXS.N.hg38 C3N-02758 LUAD WXS blood_normal CPT0184100002 05fdd306-6939-4645-b421-896b80d20cc7_wxs_gdc_realn.bam 40562489474 BAM harmonized CPTAC3 e198681a-c62b-4d8c-942b-04aceec8117c 3170a91d62acbbdfb198eb137c121312 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal"} -C3N-02758.WXS.T C3N-02758 LUAD WXS tumor CPT0184040007 CPT0184040007.WholeExome.RP-1303.bam 24802307018 BAM aligned CPTAC3 22bfcefd-60aa-4886-9997-bce81fff6245 12c0c13577a6ba7a391a5b9b8c3f0694 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor"} -C3N-02758.WXS.T.hg38 C3N-02758 LUAD WXS tumor CPT0184040007 aa3c1897-0ed9-472d-a378-97ccfabcbd13_wxs_gdc_realn.bam 33844999529 BAM harmonized CPTAC3 99419f71-0888-4a16-9b6c-769fd1f5d255 946709c729df58985d91c32efaba772e {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor"} -C3N-02761.MethArray.Green.T C3N-02761 CCRCC Methylation_Array tumor CPT0184140007 203219650136_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f01cf032-fef6-43f4-b37e-6af43190dc62 dc52359cfdb2b4e382c4168556c63987 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor"} -C3N-02761.MethArray.Red.T C3N-02761 CCRCC Methylation_Array tumor CPT0184140007 203219650136_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 c3395272-d5cc-4ff6-981b-01838e8724db 64cc84d74a54f686b8da6d1859963e72 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor"} -C3N-02761.miRNA-Seq.S44_L005_R1.T C3N-02761 CCRCC miRNA-Seq tumor CPT0184140009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L005_R1_001.unaln.bam 260189612 BAM S44_L005_R1 unaligned CPTAC3 567e837d-4038-4e47-a19d-908d78ea537a 5ad55b63831c138537d36adb5628e486 {"aliquot_tag": "ALQ_6f16b9e9", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02761.miRNA-Seq.T.hg38 C3N-02761 CCRCC miRNA-Seq tumor CPT0184140009 f897e7ed-f385-4f16-b14b-48fb32b68981_mirnaseq_gdc_realn.bam 290135199 BAM harmonized CPTAC3 ed2852cd-9a02-4c5c-8adc-951d5f9cc19f 96de598f642f292f212a06b368e0c963 {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor"} -C3N-02761.RNA-Seq.chimeric.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.chimeric.gdc_realn.bam 30561232 BAM chimeric harmonized CPTAC3 b62c7d4d-d251-4f98-98e6-32ec87e3f132 b067e906cc5626ef13930e2f0e26a065 {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor"} -C3N-02761.RNA-Seq.genomic.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.genomic.gdc_realn.bam 6712067680 BAM genomic harmonized CPTAC3 b491cbae-6c92-48d0-a9ad-6b32759eab7f 4042a46f67d8f9f4d246f7102e19e6db {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor"} -C3N-02761.RNA-Seq.S4_L001_R1.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3197037971 FASTQ S4_L001_R1 unaligned CPTAC3 3ba9943f-4dac-4963-be8b-586d06e2d2e9 43880c0b69ea012645ad612a27aba3f8 {"aliquot_tag": "ALQ_6f16b9e9", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02761.RNA-Seq.S4_L001_R2.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R2_001.fastq.gz 3505311243 FASTQ S4_L001_R2 unaligned CPTAC3 faf38c61-801e-49cf-b180-441db797ad8d 4b046073d3975ab7b27131b5cf25d0ee {"aliquot_tag": "ALQ_6f16b9e9", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02761.RNA-Seq.transcriptome.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.transcriptome.gdc_realn.bam 8445666020 BAM transcriptome harmonized CPTAC3 816846b5-0ed7-4e9d-b266-4064aadba8c4 d9715c46dac5897540458765f9f86c31 {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor"} -C3N-02761.WGS.N C3N-02761 CCRCC WGS blood_normal CPT0184200002 CPT0184200002.WholeGenome.RP-1303.bam 84372807761 BAM aligned CPTAC3 72c84c02-360b-47a2-b24c-4abc75fff61a e8837343d340acb0d97c1fabaec4fa1f {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02761.WGS.N.hg38 C3N-02761 CCRCC WGS blood_normal CPT0184200002 8ac61f4c-fbb4-4064-8a3c-6ebb21d820fe_wgs_gdc_realn.bam 121970075617 BAM harmonized CPTAC3 d8f71ee5-3e3c-47ad-a764-513f89e6c472 673423fee832f0adb017e010fad6f47e {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02761.WGS.T C3N-02761 CCRCC WGS tumor CPT0184140007 CPT0184140007.WholeGenome.RP-1303.bam 106341197654 BAM aligned CPTAC3 60013e08-6152-4f58-9b01-0674ab99aca3 2a312af9e848b49b98cf7357841a50b8 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor"} -C3N-02761.WGS.T.hg38 C3N-02761 CCRCC WGS tumor CPT0184140007 e78b1f3b-10e7-4324-9099-6b8e67594c2b_wgs_gdc_realn.bam 154462263616 BAM harmonized CPTAC3 c9dbd8e7-5603-46fc-aada-df23bbb1025e 7f61d9a434c238209286da2488447fd2 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor"} -C3N-02761.WXS.N C3N-02761 CCRCC WXS blood_normal CPT0184200002 CPT0184200002.WholeExome.RP-1303.bam 27361127878 BAM aligned CPTAC3 a3395e77-ec42-419d-83b7-f6916641f48f 6e30a92a963b349c870e72a01d58c033 {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02761.WXS.N.hg38 C3N-02761 CCRCC WXS blood_normal CPT0184200002 8ac61f4c-fbb4-4064-8a3c-6ebb21d820fe_wxs_gdc_realn.bam 37361543551 BAM harmonized CPTAC3 7055265a-1b52-456b-b76b-8c3bd558153b c31802521fb2686892abd4cf313e7b79 {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal"} -C3N-02761.WXS.T C3N-02761 CCRCC WXS tumor CPT0184140007 CPT0184140007.WholeExome.RP-1303.bam 23783115835 BAM aligned CPTAC3 a923faa2-0521-4651-9db0-af4c64199834 e832c4441efae2dfe0181a13ddd869f6 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor"} -C3N-02761.WXS.T.hg38 C3N-02761 CCRCC WXS tumor CPT0184140007 e78b1f3b-10e7-4324-9099-6b8e67594c2b_wxs_gdc_realn.bam 32136680898 BAM harmonized CPTAC3 1a9c674e-1178-4405-b949-7b4f8db3c30c ff7955071044f9b4ba674014301a7df2 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor"} -C3N-02763.MethArray.Green.T C3N-02763 CCRCC Methylation_Array tumor CPT0184240012 203219650211_R08C01_Grn.idat 13676235 IDAT Green NA CPTAC3 10dcc5ee-848d-4b30-89ac-5980918b14c3 afc16fef6932ebca26884516b52ca4c1 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor"} -C3N-02763.MethArray.Red.T C3N-02763 CCRCC Methylation_Array tumor CPT0184240012 203219650211_R08C01_Red.idat 13676235 IDAT Red NA CPTAC3 f17ec327-67c4-4090-ab33-1d996098508a 727c91ba716ffc5aa0d158e631cf626e {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor"} -C3N-02763.miRNA-Seq.S41_L005_R1.T C3N-02763 CCRCC miRNA-Seq tumor CPT0184240010 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L005_R1_001.unaln.bam 242322712 BAM S41_L005_R1 unaligned CPTAC3 6777c96b-037b-488d-9de7-0adec155b9f0 c7d51bf4d98e8f320fd02606d5c9fddb {"aliquot_tag": "ALQ_894542a2", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02763.miRNA-Seq.T.hg38 C3N-02763 CCRCC miRNA-Seq tumor CPT0184240010 06a9a18d-cf25-4ca0-964d-ee101420a829_mirnaseq_gdc_realn.bam 266581041 BAM harmonized CPTAC3 a6c0bb44-8d70-4ab4-b460-723728542863 5df53c51e0c5f1fe0438d5c4474939ba {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor"} -C3N-02763.RNA-Seq.chimeric.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.chimeric.gdc_realn.bam 48222922 BAM chimeric harmonized CPTAC3 4c0d83e9-fc42-4b64-a5b3-23e8e38222d4 cdad61aa3f0e559dad805c8269d44181 {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor"} -C3N-02763.RNA-Seq.genomic.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.genomic.gdc_realn.bam 8409042230 BAM genomic harmonized CPTAC3 632ba398-bd36-41a3-b477-be9fafc47b18 17cf1b4068e27a92cb627438332886a5 {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor"} -C3N-02763.RNA-Seq.S3_L001_R1.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3879862953 FASTQ S3_L001_R1 unaligned CPTAC3 cf1b18a5-cede-459e-ba03-1803479e8f5b d0c3fd83465e9827fe98840ec8999635 {"aliquot_tag": "ALQ_894542a2", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02763.RNA-Seq.S3_L001_R2.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4272884821 FASTQ S3_L001_R2 unaligned CPTAC3 76e5e43f-8bcf-4429-9450-7a2d2903eca7 372a0264b66d702b0435b8a480e0269d {"aliquot_tag": "ALQ_894542a2", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02763.RNA-Seq.transcriptome.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.transcriptome.gdc_realn.bam 11211408561 BAM transcriptome harmonized CPTAC3 cf51ae1d-f722-42fe-aca3-f3ae126bef12 c49f9df9bfaf865c3c0b6f2d9421f728 {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor"} -C3N-02763.WGS.N C3N-02763 CCRCC WGS blood_normal CPT0184300002 CPT0184300002.WholeGenome.RP-1303.bam 51487786011 BAM aligned CPTAC3 85bed1c5-72f0-4a5f-83d2-87356d7bc01b a704285d72e1aea0e6de0ad778b78d86 {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-02763.WGS.N.hg38 C3N-02763 CCRCC WGS blood_normal CPT0184300002 5a2ff964-2739-4720-81e0-a04c493b51c4_wgs_gdc_realn.bam 74913379784 BAM harmonized CPTAC3 2a65e51a-4f6c-464e-89fc-8f4981a7a4dd 3534d50bb8f8b4909400ec9ee439d644 {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-02763.WGS.T C3N-02763 CCRCC WGS tumor CPT0184240012 CPT0184240012.WholeGenome.RP-1303.bam 88743332934 BAM aligned CPTAC3 87a32114-f55f-4458-9e9c-1324ebf0f149 e2aa27a3b7382af51a4ac41d1874a836 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor"} -C3N-02763.WGS.T.hg38 C3N-02763 CCRCC WGS tumor CPT0184240012 a71de455-32c2-45d0-88e9-a4f494f543ff_wgs_gdc_realn.bam 128552834935 BAM harmonized CPTAC3 60fdde9d-83b1-473e-a69f-a704b5f6d7b6 a0be9bd8bdd5e83bb846ec8a8dcaa8a5 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor"} -C3N-02763.WXS.N C3N-02763 CCRCC WXS blood_normal CPT0184300002 CPT0184300002.WholeExome.RP-1303.bam 26376005451 BAM aligned CPTAC3 4be46227-4dbb-4689-8bcd-e4d01accb58e 93fb6fbd9a54c177dfefd937e3249e2c {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-02763.WXS.N.hg38 C3N-02763 CCRCC WXS blood_normal CPT0184300002 5a2ff964-2739-4720-81e0-a04c493b51c4_wxs_gdc_realn.bam 35831735690 BAM harmonized CPTAC3 481ab115-c5bb-43fb-9269-bce3359aaa93 eb360ec8b218fcd9db6bb138b1848a44 {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-02763.WXS.T C3N-02763 CCRCC WXS tumor CPT0184240012 CPT0184240012.WholeExome.RP-1303.bam 18869045523 BAM aligned CPTAC3 97d5ff53-defe-48e6-aab2-4800dea69e5c f9761e7d8f78b6bd2719bc762de733e4 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor"} -C3N-02763.WXS.T.hg38 C3N-02763 CCRCC WXS tumor CPT0184240012 a71de455-32c2-45d0-88e9-a4f494f543ff_wxs_gdc_realn.bam 25870567240 BAM harmonized CPTAC3 f76cb817-7c69-4b31-8c1e-13eb6d8dcdbf 8e2608a0dfb20ff3aa64ceb99ed49f78 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor"} -C3N-02764.MethArray.Green.A C3N-02764 LUAD Methylation_Array tissue_normal CPT0184340006 203219650177_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a784370a-a410-4995-9a4e-0b53d50add69 52979c2413330be7e73fa6eec19ad56c {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.MethArray.Green.T C3N-02764 LUAD Methylation_Array tumor CPT0184350010 203219650174_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0d72f3c9-8d89-42ad-a191-d489bf847f45 078f2681c583b0eb141a6cbc88f11076 {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor"} -C3N-02764.MethArray.Red.A C3N-02764 LUAD Methylation_Array tissue_normal CPT0184340006 203219650177_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 06e57922-04bb-47b1-84ed-e7a8f89e25da 689ce4226d39f45ba3519dd4a9fb811e {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.MethArray.Red.T C3N-02764 LUAD Methylation_Array tumor CPT0184350010 203219650174_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 99d10a16-d4bc-467d-9ea7-ed65172deb0a 2acad47d280d0e89b1424c12a792140e {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor"} -C3N-02764.miRNA-Seq.A.hg38 C3N-02764 LUAD miRNA-Seq tissue_normal CPT0184340009 dad34d9b-5343-4854-b1bb-5418dd1daacf_mirnaseq_gdc_realn.bam 241599094 BAM harmonized CPTAC3 d3982410-5c25-4f64-8aad-1d43f3556908 d836db5c038a51b676d54d5c2b0c8050 {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.miRNA-Seq.S28_L007_R1.T C3N-02764 LUAD miRNA-Seq tumor CPT0184350007 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L007_R1_001.unaln.bam 261053833 BAM S28_L007_R1 unaligned CPTAC3 9e618ba8-05eb-471b-97b8-fa9597569694 829f653756c154759ad7c2818cba36d2 {"aliquot_tag": "ALQ_f8061c55", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02764.miRNA-Seq.S7_L008_R1.A C3N-02764 LUAD miRNA-Seq tissue_normal CPT0184340009 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L008_R1_001.unaln.bam 217882880 BAM S7_L008_R1 unaligned CPTAC3 9ed190e5-d802-4120-9ff3-554a9f0e78e0 79da3392630dc381df2097c1ca50f6f6 {"aliquot_tag": "ALQ_22de18e2", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.miRNA-Seq.T.hg38 C3N-02764 LUAD miRNA-Seq tumor CPT0184350007 ee7eac4c-5aef-477e-b436-39608532ae54_mirnaseq_gdc_realn.bam 282752311 BAM harmonized CPTAC3 9565ae8f-8350-4d92-8d40-babbe97ca2c3 4d37bc63c83aa69745bf1d0de72006e9 {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor"} -C3N-02764.RNA-Seq.chimeric.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.chimeric.gdc_realn.bam 398158731 BAM chimeric harmonized CPTAC3 10819cd2-8349-4ad5-8aba-5f097239d81d 4c7f163178a258a9a0e8c0f83f3f143a {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.RNA-Seq.chimeric.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.chimeric.gdc_realn.bam 46503355 BAM chimeric harmonized CPTAC3 837d31f8-31a2-4e67-92f9-a38ce3f723ae f27ca997528dc70ae002c78b2658820a {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor"} -C3N-02764.RNA-Seq.genomic.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.genomic.gdc_realn.bam 9437111423 BAM genomic harmonized CPTAC3 8112db65-c34e-4a8b-9043-797d05d61d9a d7158e83da613fca34efa9dd16baf63d {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.RNA-Seq.genomic.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.genomic.gdc_realn.bam 9531009107 BAM genomic harmonized CPTAC3 f49dcc74-0d74-4716-a63c-4fcc3612d56c ba24bd293a463f761ff37787b5a75731 {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor"} -C3N-02764.RNA-Seq.S2_L008_R1.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R1_001.fastq.gz 3977611664 FASTQ S2_L008_R1 unaligned CPTAC3 5b1e22db-ad4d-48f4-9542-230fbf50adf9 8e9f35578ee484f430d5059f40ea43b1 {"aliquot_tag": "ALQ_22de18e2", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.RNA-Seq.S2_L008_R2.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R2_001.fastq.gz 4479486696 FASTQ S2_L008_R2 unaligned CPTAC3 f9876b80-3332-4f2a-9996-075ce2e9810c 70a6f4c1f235a3b65f21f5ad4feafce2 {"aliquot_tag": "ALQ_22de18e2", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.RNA-Seq.S6_L008_R1.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R1_001.fastq.gz 4487412544 FASTQ S6_L008_R1 unaligned CPTAC3 33743fd4-9138-4827-b68d-88929bc34b1a f01f113e5779df17312b8b8829110950 {"aliquot_tag": "ALQ_f8061c55", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02764.RNA-Seq.S6_L008_R2.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R2_001.fastq.gz 4408956570 FASTQ S6_L008_R2 unaligned CPTAC3 a106d61c-210f-4fba-b822-452636328533 45972a920500256c010cf2a9d4c35ce7 {"aliquot_tag": "ALQ_f8061c55", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02764.RNA-Seq.transcriptome.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.transcriptome.gdc_realn.bam 9672833989 BAM transcriptome harmonized CPTAC3 dca699f6-f9c4-4862-97d5-fbd1a1a242fa 3d13786491c91b82327ddaf6beb6e0ba {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.RNA-Seq.transcriptome.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.transcriptome.gdc_realn.bam 11173237390 BAM transcriptome harmonized CPTAC3 55d826fe-6380-4820-9ac0-947d4f761070 9b3540c02f3688d1cebf4b6dce48daee {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor"} -C3N-02764.WGS.N C3N-02764 LUAD WGS blood_normal CPT0184400002 CPT0184400002.WholeGenome.RP-1303.bam 52696440353 BAM aligned CPTAC3 086abff8-7d41-44b4-9758-c68b6fca5ba6 5a81a23a0b9d7f280f9a39a7ebeef3ab {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal"} -C3N-02764.WGS.N.hg38 C3N-02764 LUAD WGS blood_normal CPT0184400002 668cc3ea-3515-4e22-8c18-23fd22dfbc31_wgs_gdc_realn.bam 75146831636 BAM harmonized CPTAC3 21cfc630-77c8-4a73-b634-aacc83edc896 4a88ae7d5f62464175ce9824e9429e00 {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal"} -C3N-02764.WGS.T C3N-02764 LUAD WGS tumor CPT0184350010 CPT0184350010.WholeGenome.RP-1303.bam 50400358434 BAM aligned CPTAC3 c305cb68-65be-4185-a0b0-dd24f23af386 2198059f38361742a56ef6593c185837 {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor"} -C3N-02764.WGS.T.hg38 C3N-02764 LUAD WGS tumor CPT0184350010 eaea7605-ec9f-4634-979f-8b8346388609_wgs_gdc_realn.bam 74545361071 BAM harmonized CPTAC3 b2116217-446e-4178-a57a-61d5ba5fb695 185f72948aa079e9cd722fd9f88b6b0c {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor"} -C3N-02764.WXS.A C3N-02764 LUAD WXS tissue_normal CPT0184340006 CPT0184340006.WholeExome.RP-1303.bam 40752830584 BAM aligned CPTAC3 81955cf1-f4de-429b-bf82-c27f48409f1c 055438f44c6ece49ee50762a0b5a71a0 {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.WXS.A.hg38 C3N-02764 LUAD WXS tissue_normal CPT0184340006 34cefe90-eab0-4f06-8e65-9471646cbd1b_wxs_gdc_realn.bam 56578846124 BAM harmonized CPTAC3 970c73b1-887b-4df1-a958-247f3d5e08c3 61fd587d129575e05fe43bbd7fa9144f {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02764.WXS.N C3N-02764 LUAD WXS blood_normal CPT0184400002 CPT0184400002.WholeExome.RP-1303.bam 22122655701 BAM aligned CPTAC3 925c3fa1-1ecf-4f7f-82ab-7252ff7caecf ac4a411b1f9c0313e9c2615486aaa4ec {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal"} -C3N-02764.WXS.N.hg38 C3N-02764 LUAD WXS blood_normal CPT0184400002 668cc3ea-3515-4e22-8c18-23fd22dfbc31_wxs_gdc_realn.bam 30085370723 BAM harmonized CPTAC3 1d9880d8-f0e9-4c28-ad1e-4b0c121db2bd 0028aaac7d03e158a55f23d246bbe187 {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal"} -C3N-02764.WXS.T C3N-02764 LUAD WXS tumor CPT0184350010 CPT0184350010.WholeExome.RP-1303.bam 21853775270 BAM aligned CPTAC3 52e6c6d0-af75-452e-9698-8e594d4ac393 d7b3a8f6efe273f410a72995244e811e {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor"} -C3N-02764.WXS.T.hg38 C3N-02764 LUAD WXS tumor CPT0184350010 eaea7605-ec9f-4634-979f-8b8346388609_wxs_gdc_realn.bam 29818447906 BAM harmonized CPTAC3 f091ceb9-d929-4311-a99e-2d44ff3b90fd ef0d91d72ae453dfae75c441bbe45ce2 {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor"} -C3N-02765.ANN_66d7c4ee.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.chimeric.gdc_realn.bam 212029964 BAM chimeric harmonized CPTAC3 24a6d9bd-1104-4990-9b88-7cd8507623ca 1f86388e7cd34b4a761f6bf179408b90 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.ANN_66d7c4ee.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.genomic.gdc_realn.bam 8016339044 BAM genomic harmonized CPTAC3 9b6bfe77-e448-456d-abf0-59976de38cdd 67dfe4d4d0e73ccbeea70cc023405da7 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.ANN_66d7c4ee.RNA-Seq.S11_L007_R1.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R1_001.fastq.gz 3476702923 FASTQ S11_L007_R1 unaligned CPTAC3 6ed9b2ec-4ae8-40e3-a76c-a358dc9199c2 2596aa9862d456523691404159005811 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02765.ANN_66d7c4ee.RNA-Seq.S11_L007_R2.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R2_001.fastq.gz 3883224355 FASTQ S11_L007_R2 unaligned CPTAC3 ec78d64b-29ef-457b-a8ef-e1159a06d851 208816663ed0a0d09f47972a77e21144 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S11", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02765.ANN_66d7c4ee.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.transcriptome.gdc_realn.bam 10085856004 BAM transcriptome harmonized CPTAC3 23a0dba5-ea8c-415a-ae9a-0a3dddd014ab 76a1ece727575ac091682d5a696ddedb {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_17d8912.WXS.T C3N-02765 PDA WXS tumor CPT0184450054 CPT0184450054.WholeExome.RP-1303.bam 37835203105 BAM aligned CPTAC3 3524f979-43dc-4e22-90a7-d940284a03f0 d6b203460146549fbd742f47f73af56f {"aliquot_tag": "DUP_17d8912", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_17d8912.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450054 46f39431-79cf-4335-beda-d2eb94b2fd97_wxs_gdc_realn.bam 51745092746 BAM harmonized CPTAC3 48c289b8-9604-45e2-a4f8-117b7e9817b0 22500fa22faa2c433e8de5e9d98539df {"aliquot_tag": "DUP_17d8912", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_2d3d1ec8.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.chimeric.gdc_realn.bam 82788099 BAM chimeric harmonized CPTAC3 e83e9b63-87dc-4797-8500-eabf72dc3f6f c5f2f3cab7863223dfde812811f6db6c {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_2d3d1ec8.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.genomic.gdc_realn.bam 9301308723 BAM genomic harmonized CPTAC3 de8e9fcb-be72-4390-ae3f-f16d4824b304 e4b809522b3bd7ad7c44c8ddd920cc29 {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_2d3d1ec8.RNA-Seq.S4_L001_R1.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3329241887 FASTQ S4_L001_R1 unaligned CPTAC3 838bb493-b2e5-4f62-975e-f6ea4ea8eee6 460e6df0617834576ad02e6bfaf31bcb {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_2d3d1ec8.RNA-Seq.S4_L001_R2.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 3985436345 FASTQ S4_L001_R2 unaligned CPTAC3 47d05475-2278-4844-81bb-4a30b2cbd3cf a3151146ba3d4dc26c5296d123b358b8 {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_2d3d1ec8.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.transcriptome.gdc_realn.bam 9542210581 BAM transcriptome harmonized CPTAC3 03c1bdef-4fe3-40f6-ab04-902349cd07dd 3bb69536fbe7c159930679f1843729c6 {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_767ab984.WXS.T C3N-02765 PDA WXS tumor CPT0184450055 CPT0184450055.WholeExome.RP-1303.bam 27342164261 BAM aligned CPTAC3 000d31d3-1c1b-489a-aa3d-fb7ca3966905 1afb1b87e76c0ab738528d59b976ce2b {"aliquot_tag": "DUP_767ab984", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_767ab984.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450055 3aa9c329-5382-4d4c-86a2-1f313124b4bb_wxs_gdc_realn.bam 37976633564 BAM harmonized CPTAC3 affe7493-8ec2-48f2-8d77-6684ce189f20 e251a0de335dc73fb679ef208ab6ee2b {"aliquot_tag": "DUP_767ab984", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_96d584b7.WXS.N C3N-02765 PDA WXS blood_normal CPT0184500002 CPT0184500002.WholeExome.RP-1303.bam 25531276256 BAM aligned CPTAC3 4f8fcbb3-89f2-47f6-9315-d8aa83bfe825 0e03bda4395f17a664cd041d978737bc {"aliquot_tag": "DUP_96d584b7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02765.DUP_96d584b7.WXS.N.hg38 C3N-02765 PDA WXS blood_normal CPT0184500002 0a191209-9e23-48d3-b91e-ca049670f43e_wxs_gdc_realn.bam 36624758075 BAM harmonized CPTAC3 f23b9dea-98a3-4d7a-ae94-4d206805a687 b79529c5600369a397e76bea4010e58d {"aliquot_tag": "DUP_96d584b7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02765.DUP_9f191cb1.WXS.T C3N-02765 PDA WXS tumor CPT0184450053 CPT0184450053.WholeExome.RP-1303.bam 26075201852 BAM aligned CPTAC3 01affcd9-9410-41e9-9f30-f80528dca801 5aa29dbd30e8cdb0250acfa8f81f0c7f {"aliquot_tag": "DUP_9f191cb1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_9f191cb1.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450053 b6d39075-48b8-4eff-8838-f4cf2976885d_wxs_gdc_realn.bam 35954402673 BAM harmonized CPTAC3 4bdd173e-8229-40d7-80f9-2dd4b7d63b71 7cd84a4b31f25547a825ae7a936aa512 {"aliquot_tag": "DUP_9f191cb1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_c3337fe4.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.chimeric.gdc_realn.bam 373975523 BAM chimeric harmonized CPTAC3 c06416dd-74f8-4251-9488-6a0e004f694f 3482850a3e6954aa47c188f9f45f3edc {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_c3337fe4.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.genomic.gdc_realn.bam 9949122407 BAM genomic harmonized CPTAC3 a2723a26-d0a3-41ef-9036-d45796d3a4b2 ee748db2a8ee7bcde92a7b75b6359379 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_c3337fe4.RNA-Seq.S15_L004_R1.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 4010817260 FASTQ S15_L004_R1 unaligned CPTAC3 53cea683-4bc3-49f3-9163-30156838864b 287aefce94294ffa64aee31ea018adc6 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_c3337fe4.RNA-Seq.S15_L004_R2.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4530727151 FASTQ S15_L004_R2 unaligned CPTAC3 2b3616e5-6792-4b8a-9bb2-d2e6cb2b38f3 87a340e152c6d043975898d42653f804 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_c3337fe4.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.transcriptome.gdc_realn.bam 9716651789 BAM transcriptome harmonized CPTAC3 fcafead0-f9fe-42e2-b7c8-f301ad62a2f2 fc8566744bfb65410fa4437630ecacc4 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02765.DUP_f9e4f171.RNA-Seq.chimeric.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.chimeric.gdc_realn.bam 357842011 BAM chimeric harmonized CPTAC3 ef0952c0-5a50-49d9-bf4e-095c71bb7250 a21e84e381c982ad70543679c38e00c0 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02765.DUP_f9e4f171.RNA-Seq.genomic.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.genomic.gdc_realn.bam 10610949083 BAM genomic harmonized CPTAC3 568f0d83-5776-4b4c-894c-b618a33ea844 f51358a67f6b30d4585252aac469cce5 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02765.DUP_f9e4f171.RNA-Seq.S15_L005_R1.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R1_001.fastq.gz 4512545058 FASTQ S15_L005_R1 unaligned CPTAC3 0cff2469-c2bc-417b-b5ed-6cd331559f9f fd8e36c54ad376c6f2e4be5f6a694824 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02765.DUP_f9e4f171.RNA-Seq.S15_L005_R2.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R2_001.fastq.gz 4859544750 FASTQ S15_L005_R2 unaligned CPTAC3 916ae392-05d2-4a2d-9b3a-70b0c6d281c4 934d4cc66b3eb9ed7d13eedea83e07b6 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02765.DUP_f9e4f171.RNA-Seq.transcriptome.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.transcriptome.gdc_realn.bam 12291562333 BAM transcriptome harmonized CPTAC3 e3750c68-9520-474f-9896-30d42bc5274b 52f38701d8eaf2bc05c1c429e3be8bb1 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.MethArray.Green.A C3N-02768 PDA Methylation_Array tissue_normal CPT0207990007 203561450106_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 49258024-95b7-4330-a311-befb587a75c7 a6bc4e8856db96200598f29b8c3a695a {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.MethArray.Green.T C3N-02768 PDA Methylation_Array tumor CPT0207980008 203561450027_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c7fb07b5-b1f8-4217-ad32-97e5e3787788 ec02ce59cdb9f077de9e219fd90f445b {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor"} -C3N-02768.MethArray.Red.A C3N-02768 PDA Methylation_Array tissue_normal CPT0207990007 203561450106_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 795efa34-5e8b-4459-8eca-bf7a61714855 a0ce30ecb5fc6d1d31914f0228d90fd2 {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.MethArray.Red.T C3N-02768 PDA Methylation_Array tumor CPT0207980008 203561450027_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 720e7509-02ee-4641-9065-c127c4a954fc 5da9e00a4b11b9b97390440b1ca19c72 {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor"} -C3N-02768.miRNA-Seq.A.hg38 C3N-02768 PDA miRNA-Seq tissue_normal CPT0207990010 3dafe0ca-6f6f-42c3-b9c1-ff9f1fde677f_mirnaseq_gdc_realn.bam 457957758 BAM harmonized CPTAC3 c481af8e-4d88-46df-92e8-c87a1c20cb01 db2d1431ede895cc1e7d676e7bb9489e {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.miRNA-Seq.S25_L003_R1.A C3N-02768 PDA miRNA-Seq tissue_normal CPT0207990010 190813_UNC32-K00270_0196_AH5MCWBBXY_CTATAC_S25_L003_R1_001.unaln.bam 405590479 BAM S25_L003_R1 unaligned CPTAC3 8627a9ca-64ee-4fad-8c0f-52c76118457b d4016f96415e9400a1ba1b2e69016e0e {"aliquot_tag": "ALQ_c0924b3d", "sample": "S25", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.miRNA-Seq.S8_L004_R1.T C3N-02768 PDA miRNA-Seq tumor CPT0207980011 190712_UNC32-K00270_0192_BH7HL3BBXY_CACTCA_S8_L004_R1_001.unaln.bam 171567831 BAM S8_L004_R1 unaligned CPTAC3 19e39f9c-0520-4db9-9f62-bec8f7dd3e29 3691749676fc3a23cf46c4727cfc3749 {"aliquot_tag": "ALQ_8af5521b", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02768.miRNA-Seq.T.hg38 C3N-02768 PDA miRNA-Seq tumor CPT0207980011 79a919a6-53da-41e0-8030-b4945f1a8143_mirnaseq_gdc_realn.bam 195297723 BAM harmonized CPTAC3 c369335b-8591-4181-9f67-b5a6951dc60d f2200fd0365a26836b3de0083b0cffa2 {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor"} -C3N-02768.RNA-Seq.chimeric.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.chimeric.gdc_realn.bam 39850045 BAM chimeric harmonized CPTAC3 1a49b0e8-206a-4f24-8f0a-44c89b00a93c 57f0b69c29ca35fa3b826d96eb6dae5e {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.RNA-Seq.chimeric.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.chimeric.gdc_realn.bam 30641190 BAM chimeric harmonized CPTAC3 45ff964e-921a-410c-a822-e2952db19653 b29199f604baf4a6021982d2d5d0a697 {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor"} -C3N-02768.RNA-Seq.genomic.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.genomic.gdc_realn.bam 10142194346 BAM genomic harmonized CPTAC3 0fca3ff8-76b6-4a80-ac71-e8ae33196cb0 91fadb6aaa7b9f0abcd45ac810d6131f {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.RNA-Seq.genomic.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.genomic.gdc_realn.bam 8514757173 BAM genomic harmonized CPTAC3 eb603f25-beae-493d-a6b2-2d535d99d70b a13b87cb1d9371f6cee4df69d32b2a08 {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor"} -C3N-02768.RNA-Seq.S19_L005_R1.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R1_001.fastq.gz 4770279436 FASTQ S19_L005_R1 unaligned CPTAC3 4e176a56-9f2e-48a9-a58d-e421acfdaa26 c6738b708a5e86d561ed7cab26765dc9 {"aliquot_tag": "ALQ_c0924b3d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.RNA-Seq.S19_L005_R2.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R2_001.fastq.gz 5361032393 FASTQ S19_L005_R2 unaligned CPTAC3 bc6b55e2-71e6-4ac3-a02b-764326cc2f3f 3b9c34088d8ca805a2c5afd87711a4ae {"aliquot_tag": "ALQ_c0924b3d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.RNA-Seq.S3_L001_R1.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 4050847238 FASTQ S3_L001_R1 unaligned CPTAC3 4c83b96a-e1bc-4db8-a84e-36e8b1b4b7d5 872e23c5fb089ff1e1786e8ffb2dac14 {"aliquot_tag": "ALQ_8af5521b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02768.RNA-Seq.S3_L001_R2.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 4337524815 FASTQ S3_L001_R2 unaligned CPTAC3 2b189e60-6209-49cf-8fca-7760c35b17fc d8719a46df4bce0268477daf5255c0e4 {"aliquot_tag": "ALQ_8af5521b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02768.RNA-Seq.transcriptome.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.transcriptome.gdc_realn.bam 11582307489 BAM transcriptome harmonized CPTAC3 607c550f-c958-4300-a999-6205aa41ad55 267ab1c0873eb518f3f2d26fd61cd79c {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.RNA-Seq.transcriptome.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.transcriptome.gdc_realn.bam 11873706716 BAM transcriptome harmonized CPTAC3 a827030b-a617-477e-9426-9a1edd1aa98d 099a70f3d94c8f7aa169896de55c6a2e {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor"} -C3N-02768.WGS.N C3N-02768 PDA WGS blood_normal CPT0208030002 CPT0208030002.WholeGenome.RP-1303.bam 70333882079 BAM aligned CPTAC3 a057c24b-90fc-47dc-80ea-94dc37012f76 06bbc1f49784e41595681b7221270053 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02768.WGS.N.hg38 C3N-02768 PDA WGS blood_normal CPT0208030002 9fa77fd6-91c8-42b5-b165-0670047bf431_wgs_gdc_realn.bam 103433157147 BAM harmonized CPTAC3 b3efebb0-eb65-4d3f-a896-7ac121c0795f b54b5192a202c1dac8d9f8cd732e1127 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02768.WGS.T C3N-02768 PDA WGS tumor CPT0207980008 CPT0207980008.WholeGenome.RP-1303.bam 144004398125 BAM aligned CPTAC3 77a8ffd9-2faf-46d9-812c-623ff95bffc2 69cb2530688357d3d692b4dc7961bddb {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor"} -C3N-02768.WGS.T.hg38 C3N-02768 PDA WGS tumor CPT0207980008 4a221fd8-7ce3-4834-b697-89592a156b8d_wgs_gdc_realn.bam 211044525010 BAM harmonized CPTAC3 354f6b40-6b0a-4c56-b626-03010f442883 4b43bb53a60af5385110615d3ccead75 {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor"} -C3N-02768.WXS.A C3N-02768 PDA WXS tissue_normal CPT0207990007 CPT0207990007.WholeExome.RP-1303.bam 21690982367 BAM aligned CPTAC3 e659b148-eb9d-4d17-abcd-7eac794bc124 167227838c871eabdc2d9c0529d5448b {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.WXS.A.hg38 C3N-02768 PDA WXS tissue_normal CPT0207990007 b4ec66f3-5e64-4d19-aada-8b31bcecfcd6_wxs_gdc_realn.bam 29375031302 BAM harmonized CPTAC3 526f5f20-d300-41ad-8644-758770c7ac34 76f17b780ec11522e8cb7fed4057850c {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02768.WXS.N C3N-02768 PDA WXS blood_normal CPT0208030002 CPT0208030002.WholeExome.RP-1303.bam 27810681637 BAM aligned CPTAC3 30c0c757-e701-40c8-9d11-46fce454e4c8 155dc7bd130e806cc0731d18703df6a6 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02768.WXS.N.hg38 C3N-02768 PDA WXS blood_normal CPT0208030002 9fa77fd6-91c8-42b5-b165-0670047bf431_wxs_gdc_realn.bam 38483892632 BAM harmonized CPTAC3 459b4750-5988-457b-802e-11b433855e2c 8ffe4307880a0cc518bf2a292f451f85 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02768.WXS.T C3N-02768 PDA WXS tumor CPT0207980008 CPT0207980008.WholeExome.RP-1303.bam 43309085034 BAM aligned CPTAC3 eec2b62d-7e0a-4e7a-abde-135a8b4530f7 7dec304d55973cf4e25797bac92e3745 {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor"} -C3N-02768.WXS.T.hg38 C3N-02768 PDA WXS tumor CPT0207980008 4a221fd8-7ce3-4834-b697-89592a156b8d_wxs_gdc_realn.bam 60636664920 BAM harmonized CPTAC3 1b09a733-37d7-41c5-8fb3-ac91e8ea69f2 f9f25a175b5894bae207c37f70fa931d {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor"} -C3N-02769.MethArray.Green.T C3N-02769 GBM Methylation_Array tumor CPT0205570009 203219650005_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 626dd0ca-d04d-4927-8a5b-951b146762e4 e387a61ac61d76007ac100d3dab63031 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor"} -C3N-02769.MethArray.Red.T C3N-02769 GBM Methylation_Array tumor CPT0205570009 203219650005_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 1bc0a9f6-29f0-4999-a4b8-8e944f14bf72 47fa0a32d63296ffa88a309ab85dd1e3 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor"} -C3N-02769.miRNA-Seq.S48_L003_R1.T C3N-02769 GBM miRNA-Seq tumor CPT0205570006 181219_UNC31-K00269_0173_BHYGJJBBXX_CGTACG_S48_L003_R1_001.unaln.bam 254035039 BAM S48_L003_R1 unaligned CPTAC3 c09925f2-998c-4ff4-a6dd-c00c71cdf053 88df83404114a47dde7105ed942c9393 {"aliquot_tag": "ALQ_6f87b07a", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02769.miRNA-Seq.T.hg38 C3N-02769 GBM miRNA-Seq tumor CPT0205570006 d08d339d-97c4-4ced-b844-de117453286a_mirnaseq_gdc_realn.bam 286581052 BAM harmonized CPTAC3 c701e731-542a-4666-88a6-e9938e05f79b acbddeef25ec5346ede05fc6e6849f73 {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor"} -C3N-02769.RNA-Seq.chimeric.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.chimeric.gdc_realn.bam 111023695 BAM chimeric harmonized CPTAC3 63ceaa28-12fc-478a-b04d-3ca175d56ee7 a934ef2794dce3524ea8371b0e79b984 {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor"} -C3N-02769.RNA-Seq.genomic.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.genomic.gdc_realn.bam 8108963815 BAM genomic harmonized CPTAC3 adda3032-4354-46dc-9100-fbec3fdecd12 986791f8e3ad8c63a181bbcf6cfdd4c2 {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor"} -C3N-02769.RNA-Seq.S32_L007_R1.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R1_001.fastq.gz 3703368298 FASTQ S32_L007_R1 unaligned CPTAC3 cbcec998-f2ef-4566-bf1d-1ba58e3ec41b d3d55f7bd4c11dda8c93673bf83786fc {"aliquot_tag": "ALQ_6f87b07a", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02769.RNA-Seq.S32_L007_R2.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R2_001.fastq.gz 3963422980 FASTQ S32_L007_R2 unaligned CPTAC3 40725a01-9dfe-4cc9-b8fd-93e06c474763 4d1b77109b9e88659ce092f3169e6a69 {"aliquot_tag": "ALQ_6f87b07a", "sample": "S32", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02769.RNA-Seq.transcriptome.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.transcriptome.gdc_realn.bam 10847506015 BAM transcriptome harmonized CPTAC3 062cfafb-e4c4-4e63-998b-0e1aad22c887 5438c9f764cc085502e964fbfc7aeb2d {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor"} -C3N-02769.scRNA-Seq.S1_L003_R1.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R1_001.fastq.gz 11929454541 FASTQ S1_L003_R1 unaligned CPTAC3 2f89a031-595d-48dd-9a51-370d57ac9c6e ff970a9e16d1f4cb6d91cf1c78a439bc {"aliquot_tag": "ALQ_9892e017", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02769.scRNA-Seq.S1_L003_R2.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R2_001.fastq.gz 27196649078 FASTQ S1_L003_R2 unaligned CPTAC3 cba6562b-14a2-4f4c-b4be-0777a59e6481 ab57afb2890b2999b9cb429b48cefac9 {"aliquot_tag": "ALQ_9892e017", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02769.scRNA-Seq.T.hg38 C3N-02769 GBM scRNA-Seq tumor CPT0205570014 possorted_genome_bam.bam 29968048497 BAM harmonized CPTAC3 9fb3b674-788a-4e5b-aca2-1aa637f49ecc 02a4a37e036b58d15a5feaa3570a5d37 {"aliquot_tag": "ALQ_9892e017", "gdc_sample_type": "Primary Tumor"} -C3N-02769.WGS.N C3N-02769 GBM WGS blood_normal CPT0205620002 CPT0205620002.WholeGenome.RP-1303.bam 64625748534 BAM aligned CPTAC3 86e332dd-384a-40f4-b6a1-691c9df72b2f 6a6c7a419bd96bb50105963b763d9bc7 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02769.WGS.N.hg38 C3N-02769 GBM WGS blood_normal CPT0205620002 676c0ccc-0273-4827-8d9a-4bf5e7af912c_wgs_gdc_realn.bam 93747243868 BAM harmonized CPTAC3 4c86fc2d-d1dc-44e3-8a3f-a6c8a0ec4811 f5e5e4542f87e7bef7fdd56270052ac1 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02769.WGS.T C3N-02769 GBM WGS tumor CPT0205570009 CPT0205570009.WholeGenome.RP-1303.bam 64787894653 BAM aligned CPTAC3 fddbda1a-4f41-40b3-aabf-b0c117753fa1 d99292496ec8a1787fdc8f0e36a2adba {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor"} -C3N-02769.WGS.T.hg38 C3N-02769 GBM WGS tumor CPT0205570009 050dc740-1aaa-40ad-82f6-c15b43a2975e_wgs_gdc_realn.bam 94824522937 BAM harmonized CPTAC3 41f74072-2efe-4386-8eaf-af7e237a5210 bb8cee1e6e2c751256adaf6f30df1670 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor"} -C3N-02769.WXS.N C3N-02769 GBM WXS blood_normal CPT0205620002 CPT0205620002.WholeExome.RP-1303.bam 27666664087 BAM aligned CPTAC3 ec1de81f-110b-412e-bfca-bea46c4e9451 53c62e196680bb524f2358ecc8324fa8 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02769.WXS.N.hg38 C3N-02769 GBM WXS blood_normal CPT0205620002 676c0ccc-0273-4827-8d9a-4bf5e7af912c_wxs_gdc_realn.bam 38068684893 BAM harmonized CPTAC3 ed6b5bb1-8c97-4511-a72d-f0d77d4ba5f2 e5929e518b4e1e199ace464323730886 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02769.WXS.T C3N-02769 GBM WXS tumor CPT0205570009 CPT0205570009.WholeExome.RP-1303.bam 28096687148 BAM aligned CPTAC3 6a2074bb-9ec3-4f32-ac15-f5a79314a180 908970eefdd2d454750e1426ca783392 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor"} -C3N-02769.WXS.T.hg38 C3N-02769 GBM WXS tumor CPT0205570009 050dc740-1aaa-40ad-82f6-c15b43a2975e_wxs_gdc_realn.bam 39369064147 BAM harmonized CPTAC3 6ed3227e-5bac-41b5-9ee9-b19d898fc78c 23772f1cc0bbaaf2b9b2f344f0ed0112 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor"} -C3N-02770.MethArray.Green.T C3N-02770 GBM Methylation_Array tumor CPT0205670007 203219650165_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 74ea1a4f-36f5-487a-90a3-4ab46f6ccec5 a1bb2994c2412caebd54efa5ce0094a2 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor"} -C3N-02770.MethArray.Red.T C3N-02770 GBM Methylation_Array tumor CPT0205670007 203219650165_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 ed1d3f60-0ab0-4a39-86a2-0a2a290edde0 3bf4d54872a096a3906a1c49b994934f {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor"} -C3N-02770.miRNA-Seq.S13_L007_R1.T C3N-02770 GBM miRNA-Seq tumor CPT0205670010 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L007_R1_001.unaln.bam 202252234 BAM S13_L007_R1 unaligned CPTAC3 913e38f8-e319-4b1c-8776-4ae9a004df03 e9d485333ce408bcaa762a53b085920c {"aliquot_tag": "ALQ_196b56a0", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02770.miRNA-Seq.T.hg38 C3N-02770 GBM miRNA-Seq tumor CPT0205670010 dbe3bd7c-a40c-430e-800c-210cf7e14ade_mirnaseq_gdc_realn.bam 230870552 BAM harmonized CPTAC3 fa798133-34e0-4e14-8132-b78d5a4ef489 6972de2872e14549eae94dd82d4ccf81 {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor"} -C3N-02770.RNA-Seq.chimeric.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.chimeric.gdc_realn.bam 37388444 BAM chimeric harmonized CPTAC3 2c90f971-f9b8-474c-a74c-dd68280e2146 097854ff6caea754923d28d3621ae52c {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor"} -C3N-02770.RNA-Seq.genomic.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.genomic.gdc_realn.bam 7634839395 BAM genomic harmonized CPTAC3 fed3fb5b-d5ea-4bc0-9912-29fbf60cc498 e00ab6fdb3a2422a3c17f4f8b4ec7ee4 {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor"} -C3N-02770.RNA-Seq.S16_L004_R1.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R1_001.fastq.gz 3798161751 FASTQ S16_L004_R1 unaligned CPTAC3 2f596c58-f44c-4a43-b9f7-f3caad62afda fbf29e304ca783feb67dab5805ad482d {"aliquot_tag": "ALQ_196b56a0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02770.RNA-Seq.S16_L004_R2.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R2_001.fastq.gz 3879586459 FASTQ S16_L004_R2 unaligned CPTAC3 30939cd9-df0f-496b-9e3e-72413f3cd919 cba4fab46f5d92a57923b5388f41d98e {"aliquot_tag": "ALQ_196b56a0", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02770.RNA-Seq.transcriptome.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.transcriptome.gdc_realn.bam 10670501385 BAM transcriptome harmonized CPTAC3 d1951494-85ed-4cb1-98bb-0321d1406421 991e17b652bc361e7b9ac188a7415269 {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor"} -C3N-02770.WGS.N C3N-02770 GBM WGS blood_normal CPT0205730002 CPT0205730002.WholeGenome.RP-1303.bam 57041246095 BAM aligned CPTAC3 73c2d70d-5406-4628-a331-40bc2f68c62c 54545d285bf85c062a05754767a64b0d {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02770.WGS.N.hg38 C3N-02770 GBM WGS blood_normal CPT0205730002 d65d3c63-2d38-4f5d-bc55-24ecea87bd4a_wgs_gdc_realn.bam 82940467860 BAM harmonized CPTAC3 2e5b6969-dfbf-4b57-8d15-d7d1fe9a4e85 5f936c8b0afbb558128c934e8617fadd {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02770.WGS.T C3N-02770 GBM WGS tumor CPT0205670007 CPT0205670007.WholeGenome.RP-1303.bam 62311334890 BAM aligned CPTAC3 dab5872c-e9ad-4546-9247-0cbc88d3eed0 e44b97fadc605261060077fe3147b9ba {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor"} -C3N-02770.WGS.T.hg38 C3N-02770 GBM WGS tumor CPT0205670007 0a1ff17e-ea71-4c3f-93dc-61f1e4a527a4_wgs_gdc_realn.bam 92032213243 BAM harmonized CPTAC3 fe589dfe-5b7a-44fd-ab3c-61586bf9901b 39971bd2143dd942c92be216c2a163d4 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor"} -C3N-02770.WXS.N C3N-02770 GBM WXS blood_normal CPT0205730002 CPT0205730002.WholeExome.RP-1303.bam 26203373453 BAM aligned CPTAC3 d288da1c-504b-44b6-89bd-de0a8df59660 c49f0b709837763344d0620403b57700 {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02770.WXS.N.hg38 C3N-02770 GBM WXS blood_normal CPT0205730002 d65d3c63-2d38-4f5d-bc55-24ecea87bd4a_wxs_gdc_realn.bam 36878958640 BAM harmonized CPTAC3 21e0448c-3eeb-4dd5-aa10-39d50ac4b0b7 09fa38dcae28f6d43497388a32f6e5e3 {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02770.WXS.T C3N-02770 GBM WXS tumor CPT0205670007 CPT0205670007.WholeExome.RP-1303.bam 28747589244 BAM aligned CPTAC3 04cffcfb-e7bd-4f32-8acb-a21272a7da6c 39b5fb4d6863ffee97139d945cb2c5d1 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor"} -C3N-02770.WXS.T.hg38 C3N-02770 GBM WXS tumor CPT0205670007 0a1ff17e-ea71-4c3f-93dc-61f1e4a527a4_wxs_gdc_realn.bam 39246370184 BAM harmonized CPTAC3 af3be973-9cef-4457-abd3-177f6535febe 2d6d0401fc75847f17edb47e67f7ed07 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor"} -C3N-02782.MethArray.Green.T C3N-02782 GBM Methylation_Array tumor CPT0205780009 203219670217_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 15f02c35-0b63-433b-874f-01f496fa39a7 eb93ba20cca4cd8d0f41a2c11f1a435b {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor"} -C3N-02782.MethArray.Red.T C3N-02782 GBM Methylation_Array tumor CPT0205780009 203219670217_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 12422174-1ab0-40a7-9d6d-5a65f8ae0d6f 389b4854e05e4369e446541953888854 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor"} -C3N-02782.miRNA-Seq.S22_L003_R1.T C3N-02782 GBM miRNA-Seq tumor CPT0205780006 181219_UNC31-K00269_0173_BHYGJJBBXX_GAGTGG_S22_L003_R1_001.unaln.bam 294393905 BAM S22_L003_R1 unaligned CPTAC3 63ab6eff-607c-43e8-9149-c597fbac7b9b 82aa14911adc060b91d5ca7c074fb422 {"aliquot_tag": "ALQ_a01f86a0", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02782.miRNA-Seq.T.hg38 C3N-02782 GBM miRNA-Seq tumor CPT0205780006 a4603ea2-4ce7-42ac-be27-f80bc0f56f16_mirnaseq_gdc_realn.bam 325902182 BAM harmonized CPTAC3 39c4b637-e6fa-4b64-a64a-0d60f34a5463 a6f44fdb84e20e4e0ef782e2b1a958d0 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor"} -C3N-02782.RNA-Seq.chimeric.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.chimeric.gdc_realn.bam 131933571 BAM chimeric harmonized CPTAC3 5df271bc-bd87-46eb-a247-af68a5ea31b8 379f9a49c1ad3cdd8d9b1cad7b6668d6 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor"} -C3N-02782.RNA-Seq.genomic.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.genomic.gdc_realn.bam 8310225994 BAM genomic harmonized CPTAC3 2c91e52f-55d6-41bb-8f6b-e7e4a4744495 d9e4bc7907864c198691bc37069b4055 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor"} -C3N-02782.RNA-Seq.S2_L007_R1.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R1_001.fastq.gz 3897476431 FASTQ S2_L007_R1 unaligned CPTAC3 8d556ee9-fb15-4daf-a9c7-a9aa6ea0363c 06a27ad2266ae027ac3d120e4fb9726b {"aliquot_tag": "ALQ_a01f86a0", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02782.RNA-Seq.S2_L007_R2.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4236088268 FASTQ S2_L007_R2 unaligned CPTAC3 4a3cbab9-db7b-4383-be3a-5bcc22259575 e560501f73f413304232d1486923b955 {"aliquot_tag": "ALQ_a01f86a0", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02782.RNA-Seq.transcriptome.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.transcriptome.gdc_realn.bam 11563450198 BAM transcriptome harmonized CPTAC3 476d11ee-feb9-40c5-a2ba-b9d9d5a50bd8 5ce31ab9ab318070d0b7d0a7f83c71d1 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor"} -C3N-02782.WGS.N C3N-02782 GBM WGS blood_normal CPT0205800002 CPT0205800002.WholeGenome.RP-1303.bam 61479019998 BAM aligned CPTAC3 2d9ca192-dc4e-4d54-b48e-38b8354cbdca 3e7c7bf839f22d0bb6742cb04a7f4e04 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02782.WGS.N.hg38 C3N-02782 GBM WGS blood_normal CPT0205800002 45512723-7706-4e43-aa40-d483af74b7a9_wgs_gdc_realn.bam 89558603666 BAM harmonized CPTAC3 5e3b93d6-8e8c-4fa4-89a1-004c6d032737 895400f14a600824f6b4ce3947a0a386 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02782.WGS.T C3N-02782 GBM WGS tumor CPT0205780009 CPT0205780009.WholeGenome.RP-1303.bam 60586673010 BAM aligned CPTAC3 c1c90346-e31f-4563-956a-fbc18965d00a 4b51d5324b43b767d25ed7a4d63bbe95 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor"} -C3N-02782.WGS.T.hg38 C3N-02782 GBM WGS tumor CPT0205780009 15dabb25-eb64-454a-89cb-ebf80f2d9dcb_wgs_gdc_realn.bam 88779998417 BAM harmonized CPTAC3 6ddf6a3d-d3fe-4d9c-af11-34d34525204d 8d56c31b7cdfccfaf234a0c9bc1fedb6 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor"} -C3N-02782.WXS.N C3N-02782 GBM WXS blood_normal CPT0205800002 CPT0205800002.WholeExome.RP-1303.bam 22100109478 BAM aligned CPTAC3 61f9f295-e0d1-4350-aa33-1dbe1760ca14 836156a2d7ec07bc071c3884572e78b1 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02782.WXS.N.hg38 C3N-02782 GBM WXS blood_normal CPT0205800002 45512723-7706-4e43-aa40-d483af74b7a9_wxs_gdc_realn.bam 31294667480 BAM harmonized CPTAC3 75fd925e-975a-4ab6-acc4-dfe9a64363f0 7920252cfd6fac99cfba6fe9068efd07 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02782.WXS.T C3N-02782 GBM WXS tumor CPT0205780009 CPT0205780009.WholeExome.RP-1303.bam 20767505801 BAM aligned CPTAC3 bbaf0843-d128-4c61-b784-a673e61f4bcf 94a9921a0853c35c3daa97822d788b4f {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor"} -C3N-02782.WXS.T.hg38 C3N-02782 GBM WXS tumor CPT0205780009 15dabb25-eb64-454a-89cb-ebf80f2d9dcb_wxs_gdc_realn.bam 28734930383 BAM harmonized CPTAC3 5c013895-4b36-4a27-b4f5-dc9693a8682c b7380c3a8263be1d74247dff1a56ba16 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor"} -C3N-02783.MethArray.Green.T C3N-02783 GBM Methylation_Array tumor CPT0205890009 203219650136_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f4a494ec-df57-43b1-9252-2efbed56c339 63179bb3d1e420fb8089f9fff4affdfb {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor"} -C3N-02783.MethArray.Red.T C3N-02783 GBM Methylation_Array tumor CPT0205890009 203219650136_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 cccf45d5-8624-4e3d-a6b2-98fc85f82602 12e5f4cd83588d4d18911ed79a9d953d {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor"} -C3N-02783.miRNA-Seq.S23_L003_R1.T C3N-02783 GBM miRNA-Seq tumor CPT0205890006 181219_UNC31-K00269_0173_BHYGJJBBXX_GGTAGC_S23_L003_R1_001.unaln.bam 229328168 BAM S23_L003_R1 unaligned CPTAC3 04fb82de-277b-491a-bc65-20fb25ddbae4 27ab2cc7f0ede0a5d7e77f580851a4e7 {"aliquot_tag": "ALQ_6c291dc5", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02783.miRNA-Seq.T.hg38 C3N-02783 GBM miRNA-Seq tumor CPT0205890006 4902e5f2-7c34-4702-bfb7-b13f494510ab_mirnaseq_gdc_realn.bam 255907588 BAM harmonized CPTAC3 e45345a9-10bc-44a5-adb8-b121f2f0881d c53c35a9b556b989a931f887d4a44b5f {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor"} -C3N-02783.RNA-Seq.chimeric.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.chimeric.gdc_realn.bam 80326276 BAM chimeric harmonized CPTAC3 71850072-1a7c-4529-81f7-b0b5bb5c57c0 af48fc05029252dea74ab931c394e62a {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor"} -C3N-02783.RNA-Seq.genomic.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.genomic.gdc_realn.bam 8915454516 BAM genomic harmonized CPTAC3 1fb40b3e-6dcb-43a1-86ac-94b2cac02d75 6f552834369a4709e0f5d20d9a6abf25 {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor"} -C3N-02783.RNA-Seq.S33_L007_R1.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R1_001.fastq.gz 4153563527 FASTQ S33_L007_R1 unaligned CPTAC3 c3a28258-46f8-4363-98f0-72ce38f840c2 dbe09bf17d337a0f2c32b0b4a38b9d4f {"aliquot_tag": "ALQ_6c291dc5", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02783.RNA-Seq.S33_L007_R2.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R2_001.fastq.gz 4420035565 FASTQ S33_L007_R2 unaligned CPTAC3 300ad88a-1572-4def-8832-9972ddf4c133 22f30fcbe74b386b3d93b76034f43e7e {"aliquot_tag": "ALQ_6c291dc5", "sample": "S33", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02783.RNA-Seq.transcriptome.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.transcriptome.gdc_realn.bam 11971926251 BAM transcriptome harmonized CPTAC3 37791d6e-816c-4f15-b306-ccbdca90c586 645f824872212f2927472f607b8fcffb {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor"} -C3N-02783.scRNA-Seq.S3_L001_R1.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R1_001.fastq.gz 7681086081 FASTQ S3_L001_R1 unaligned CPTAC3 98e869a4-4485-4e92-a24e-e3edf83fcc1c 2b1ea372edff2273cf2f97521975fa6a {"aliquot_tag": "ALQ_9b3c4da8", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02783.scRNA-Seq.S3_L001_R2.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R2_001.fastq.gz 18013082534 FASTQ S3_L001_R2 unaligned CPTAC3 1c44a09d-a35d-404a-8bba-95d59425b678 81e1e82cd0646be44b47804be228f444 {"aliquot_tag": "ALQ_9b3c4da8", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02783.scRNA-Seq.T.hg38 C3N-02783 GBM scRNA-Seq tumor CPT0205890014 possorted_genome_bam.bam 22655123367 BAM harmonized CPTAC3 134211a0-bc5e-4b42-ab4f-425517ca00dc 0899977c5ebcd214aa05c4f35e687faf {"aliquot_tag": "ALQ_9b3c4da8", "gdc_sample_type": "Primary Tumor"} -C3N-02783.WGS.N C3N-02783 GBM WGS blood_normal CPT0205950002 CPT0205950002.WholeGenome.RP-1303.bam 54585294438 BAM aligned CPTAC3 be13a90f-4a0d-4e5f-aaa6-08f583b3f1eb f2b00ea005f2bf9bd848dd5ca82d63a2 {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal"} -C3N-02783.WGS.N.hg38 C3N-02783 GBM WGS blood_normal CPT0205950002 d3bee3fd-bd2d-4191-ac63-a1f864f33004_wgs_gdc_realn.bam 79064217342 BAM harmonized CPTAC3 0382203c-2b40-4e1c-ba95-a75bfc8347d2 83add3a85b665131dad313f70b44d23d {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal"} -C3N-02783.WGS.T C3N-02783 GBM WGS tumor CPT0205890009 CPT0205890009.WholeGenome.RP-1303.bam 64343853541 BAM aligned CPTAC3 b1425615-a9a7-4f39-8bba-64f9b2260ba9 e748ca5dbdae1b2075196085e902173f {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor"} -C3N-02783.WGS.T.hg38 C3N-02783 GBM WGS tumor CPT0205890009 924abd02-843a-4fa1-bec8-1a1ce627cd58_wgs_gdc_realn.bam 95551279923 BAM harmonized CPTAC3 2d214547-9d98-41d4-99b2-a95e1457c12e f33dcb2192896f36cf234ac12abe8aa1 {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor"} -C3N-02783.WXS.N C3N-02783 GBM WXS blood_normal CPT0205950002 CPT0205950002.WholeExome.RP-1303.bam 23757707725 BAM aligned CPTAC3 bd74f383-abf3-46fd-9cfd-231a1f1b4e72 48c1252278273b55ff9e75c40165fac3 {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal"} -C3N-02783.WXS.N.hg38 C3N-02783 GBM WXS blood_normal CPT0205950002 d3bee3fd-bd2d-4191-ac63-a1f864f33004_wxs_gdc_realn.bam 33436241278 BAM harmonized CPTAC3 ff5ef114-0332-494f-9ad4-d48811775380 4de369c3b158c19a85db7ec1fe7c09b9 {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal"} -C3N-02783.WXS.T C3N-02783 GBM WXS tumor CPT0205890009 CPT0205890009.WholeExome.RP-1303.bam 24721933582 BAM aligned CPTAC3 908fd006-739a-48d2-80b9-20bf18044f9d cc02783e8fb87be0cdaa3ed12166cf80 {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor"} -C3N-02783.WXS.T.hg38 C3N-02783 GBM WXS tumor CPT0205890009 924abd02-843a-4fa1-bec8-1a1ce627cd58_wxs_gdc_realn.bam 34444612533 BAM harmonized CPTAC3 2da98aa4-5485-4147-a547-760a218b08b3 46c4a839ad2c89b07981841de81697f0 {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor"} -C3N-02784.MethArray.Green.T C3N-02784 GBM Methylation_Array tumor CPT0206000007 203219650176_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6c842ef5-4783-4a97-83e4-28a4c5164b65 22a8b1d5bfee96b6df2c737299d8cf02 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor"} -C3N-02784.MethArray.Red.T C3N-02784 GBM Methylation_Array tumor CPT0206000007 203219650176_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 2d8d9306-615f-4bf5-9713-82abfb36bd7f 149a748a34910047108dd05a9e579aa7 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor"} -C3N-02784.miRNA-Seq.S14_L007_R1.T C3N-02784 GBM miRNA-Seq tumor CPT0206000010 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L007_R1_001.unaln.bam 275530466 BAM S14_L007_R1 unaligned CPTAC3 76c5a394-239d-4aa5-9005-86de3583b6a0 17f9be6b88a0f6a407b3ec74df07e40a {"aliquot_tag": "ALQ_4cfa7330", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02784.miRNA-Seq.T.hg38 C3N-02784 GBM miRNA-Seq tumor CPT0206000010 22be7586-43ec-48f9-aa57-f0de1344df18_mirnaseq_gdc_realn.bam 310486920 BAM harmonized CPTAC3 023b51fa-6d3e-4d6e-8c6f-718390e32428 13a31bd6d86ffe2c57ab66d3e5c68300 {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor"} -C3N-02784.RNA-Seq.chimeric.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.chimeric.gdc_realn.bam 37170440 BAM chimeric harmonized CPTAC3 f5a1bbaf-61a0-4a1d-af59-d1e8aeceb0f5 45825647b11fe773d187e67311964448 {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor"} -C3N-02784.RNA-Seq.genomic.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.genomic.gdc_realn.bam 7858724464 BAM genomic harmonized CPTAC3 2eba58a6-82c6-4667-969d-b8e2a1f37fbc 393074f2ca1b730d2c9f6b528b1aa2ac {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor"} -C3N-02784.RNA-Seq.S3_L005_R1.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R1_001.fastq.gz 3693628695 FASTQ S3_L005_R1 unaligned CPTAC3 94f26cd4-ffba-4908-ba59-695a852622d4 3469606b893c3f594e563bbabb0b5c2e {"aliquot_tag": "ALQ_4cfa7330", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02784.RNA-Seq.S3_L005_R2.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R2_001.fastq.gz 3845497765 FASTQ S3_L005_R2 unaligned CPTAC3 e0b6edbc-145e-4aed-b3c0-64db111763c2 a1cca1ee5f0197d07d8c95b2f70e5987 {"aliquot_tag": "ALQ_4cfa7330", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02784.RNA-Seq.transcriptome.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.transcriptome.gdc_realn.bam 11712215630 BAM transcriptome harmonized CPTAC3 ab4c1381-433a-4d1e-a7cc-feb6849f895f 0dceed5de80231f3e194f8a722bf5c9c {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor"} -C3N-02784.scRNA-Seq.S5_L003_R1.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R1_001.fastq.gz 10247839581 FASTQ S5_L003_R1 unaligned CPTAC3 82f470cd-a7c4-46dd-ad24-f6ef6ac2fb1f 5be38469d5926812ffec926b76323ee0 {"aliquot_tag": "ALQ_3c9087bf", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02784.scRNA-Seq.S5_L003_R2.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R2_001.fastq.gz 24870065483 FASTQ S5_L003_R2 unaligned CPTAC3 51ff95f6-0a5c-495d-b26c-10cf4f66e95f ed342986a988a6bb271887bd53cadbb4 {"aliquot_tag": "ALQ_3c9087bf", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02784.scRNA-Seq.T.hg38 C3N-02784 GBM scRNA-Seq tumor CPT0206000015 possorted_genome_bam.bam 27855697509 BAM harmonized CPTAC3 4cc00a1b-6ee4-4520-a76e-94ea33e09889 de94c65f41e9cb0b966922dbf278eea2 {"aliquot_tag": "ALQ_3c9087bf", "gdc_sample_type": "Primary Tumor"} -C3N-02784.WGS.N C3N-02784 GBM WGS blood_normal CPT0206060002 CPT0206060002.WholeGenome.RP-1303.bam 59440566323 BAM aligned CPTAC3 31df1c04-e901-4b2d-ad1e-19f9f7f6589d ae32b9769b0b50daa23eb6e2ff1b3c43 {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02784.WGS.N.hg38 C3N-02784 GBM WGS blood_normal CPT0206060002 7c5eb1a4-b218-4654-9c46-76f044f69aee_wgs_gdc_realn.bam 86077990346 BAM harmonized CPTAC3 acc13c17-4844-4ecd-88bd-a087db0726d9 c5e0df33a15c810f5d74aa4f213cef14 {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02784.WGS.T C3N-02784 GBM WGS tumor CPT0206000007 CPT0206000007.WholeGenome.RP-1303.bam 57951905117 BAM aligned CPTAC3 798426df-aa4e-405b-b0df-168c71d52d00 a5b62bcfeb86fa59d1bfc52121ee7c45 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor"} -C3N-02784.WGS.T.hg38 C3N-02784 GBM WGS tumor CPT0206000007 42ab100b-26f3-4f26-8be8-ffc20930eb85_wgs_gdc_realn.bam 84594039280 BAM harmonized CPTAC3 547b44f0-795d-4d30-b3ab-1af520a2330f 251c81be1a360247c46e3d05c481bd25 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor"} -C3N-02784.WXS.N C3N-02784 GBM WXS blood_normal CPT0206060002 CPT0206060002.WholeExome.RP-1303.bam 24309529081 BAM aligned CPTAC3 836008ed-f81b-40f9-91ca-466b4d907194 aa4f3267389ff6bed326bd4c26be05f5 {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02784.WXS.N.hg38 C3N-02784 GBM WXS blood_normal CPT0206060002 7c5eb1a4-b218-4654-9c46-76f044f69aee_wxs_gdc_realn.bam 33820261062 BAM harmonized CPTAC3 1c6c584b-f47c-4580-9b78-56360987558d 6e172bcfde5cc022c301131b8923f0da {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-02784.WXS.T C3N-02784 GBM WXS tumor CPT0206000007 CPT0206000007.WholeExome.RP-1303.bam 24492515196 BAM aligned CPTAC3 ee06966a-7656-422a-a65d-27e787a99171 72d2b73d3653843366d57558eedfe9d6 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor"} -C3N-02784.WXS.T.hg38 C3N-02784 GBM WXS tumor CPT0206000007 42ab100b-26f3-4f26-8be8-ffc20930eb85_wxs_gdc_realn.bam 34098029382 BAM harmonized CPTAC3 9c032411-8dd9-4332-9f85-8362e57efdd0 e305464a14bb832ec3e7e2cf44a2774f {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor"} -C3N-02785.MethArray.Green.T C3N-02785 GBM Methylation_Array tumor CPT0206110009 203219650202_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 899fba07-a866-4ff9-82f6-202b0088eb05 021bf587ed80ce4599ed90d4bb910ccf {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor"} -C3N-02785.MethArray.Red.T C3N-02785 GBM Methylation_Array tumor CPT0206110009 203219650202_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 18c2ded9-0805-46d6-8cd0-7dacca8d0bee 1ecfe105b9433286a5e4c8b0e699a892 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor"} -C3N-02785.miRNA-Seq.S24_L004_R1.T C3N-02785 GBM miRNA-Seq tumor CPT0206110006 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTGAT_S24_L004_R1_001.unaln.bam 211228057 BAM S24_L004_R1 unaligned CPTAC3 133d3832-5a37-4e1e-bb3d-936b03082ee8 50cd2eec1302a676d543d6109df5d085 {"aliquot_tag": "ALQ_4abe1d51", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02785.miRNA-Seq.T.hg38 C3N-02785 GBM miRNA-Seq tumor CPT0206110006 36b97cc7-fd05-4d87-bdfd-6fed119dbb38_mirnaseq_gdc_realn.bam 240017664 BAM harmonized CPTAC3 ee3a92ac-afa8-4bf1-91e7-4d0d17840ca8 efc8d52a8e23bd4756f2f5e20fe154db {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor"} -C3N-02785.RNA-Seq.chimeric.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.chimeric.gdc_realn.bam 139193910 BAM chimeric harmonized CPTAC3 e4bafaec-9cb9-4caa-902a-a2865d407ff6 13ef8fbcafff86bca86da60819f21f72 {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor"} -C3N-02785.RNA-Seq.genomic.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.genomic.gdc_realn.bam 8403420224 BAM genomic harmonized CPTAC3 c78cc904-2983-46df-9d8b-c247f5460ed5 0ed11252865b8eba14de17bde8351a13 {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor"} -C3N-02785.RNA-Seq.S1_L008_R1.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R1_001.fastq.gz 4034452742 FASTQ S1_L008_R1 unaligned CPTAC3 705ac8ac-ceeb-4500-a7f5-e5dc71df23ca 6183edc73ca2f9c72d1ff87dfe9e0636 {"aliquot_tag": "ALQ_4abe1d51", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02785.RNA-Seq.S1_L008_R2.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R2_001.fastq.gz 3955844270 FASTQ S1_L008_R2 unaligned CPTAC3 eb204a8f-a4ac-41da-87dd-661ac14d13cd 1ba568bb12f3248b2ef00efbb4b1e513 {"aliquot_tag": "ALQ_4abe1d51", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02785.RNA-Seq.transcriptome.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.transcriptome.gdc_realn.bam 11455255282 BAM transcriptome harmonized CPTAC3 5193d74b-4a6e-4008-bead-c80b866a70a0 145a008c64a135ebe41536de2265698c {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor"} -C3N-02785.WGS.N C3N-02785 GBM WGS blood_normal CPT0206170002 CPT0206170002.WholeGenome.RP-1303.bam 57158824290 BAM aligned CPTAC3 e96a4030-bab1-4bde-80d5-ec9e5fcd4fcb 0f482af27a118da3d62b70f614119b80 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02785.WGS.N.hg38 C3N-02785 GBM WGS blood_normal CPT0206170002 f5c9474a-3ec0-4252-bcc4-9d4c12ccb733_wgs_gdc_realn.bam 83206373736 BAM harmonized CPTAC3 ac65cceb-d9c0-4837-a9bc-b7bf0540abac edd49d9effd1794dd81ef026bcfafc76 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02785.WGS.T C3N-02785 GBM WGS tumor CPT0206110009 CPT0206110009.WholeGenome.RP-1303.bam 58209455529 BAM aligned CPTAC3 abb8615d-c77f-4122-9ffd-218307d5e1b0 0ce8a32dc24e6f0bbf96f49bd5b21fa5 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor"} -C3N-02785.WGS.T.hg38 C3N-02785 GBM WGS tumor CPT0206110009 61b9c50a-acd5-420b-8cae-914dd6c29a66_wgs_gdc_realn.bam 84501317011 BAM harmonized CPTAC3 055c8d86-e4a5-4972-acf9-10406750f8fb b6d1656edd4aa64ec8b7d1a2c1d89d0e {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor"} -C3N-02785.WXS.N C3N-02785 GBM WXS blood_normal CPT0206170002 CPT0206170002.WholeExome.RP-1303.bam 29454076983 BAM aligned CPTAC3 be3bbac8-feaa-459e-a38e-5108f67340ff abdca849cbeb76470fe18c74b0af8a64 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02785.WXS.N.hg38 C3N-02785 GBM WXS blood_normal CPT0206170002 f5c9474a-3ec0-4252-bcc4-9d4c12ccb733_wxs_gdc_realn.bam 41425890564 BAM harmonized CPTAC3 520333c4-f6dc-4cfc-bc12-024ecfaa8cee 9c2d9b1097eea9a8a455255e6b5fe5f0 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02785.WXS.T C3N-02785 GBM WXS tumor CPT0206110009 CPT0206110009.WholeExome.RP-1303.bam 23527117043 BAM aligned CPTAC3 6f2e7e8c-a285-47a4-a375-054b4d11794f d38fd3eea01576da847555243939a6e4 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor"} -C3N-02785.WXS.T.hg38 C3N-02785 GBM WXS tumor CPT0206110009 61b9c50a-acd5-420b-8cae-914dd6c29a66_wxs_gdc_realn.bam 32228209996 BAM harmonized CPTAC3 a91ec20c-b6a4-4d0a-bbaf-c4b725597777 e46fcd5c2c3bd05b8ede602cee8df789 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor"} -C3N-02786.MethArray.Green.T C3N-02786 GBM Methylation_Array tumor CPT0206230006 203219650006_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 10308bc6-a29b-4930-b411-6682344cb415 809bb21d942f7173be5da1be07f34bcf {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor"} -C3N-02786.MethArray.Red.T C3N-02786 GBM Methylation_Array tumor CPT0206230006 203219650006_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 af14094c-ad0f-4186-afa8-2e6a5a2567df 8ea1f5714780595b104ad040a5882a7d {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor"} -C3N-02786.miRNA-Seq.S33_L008_R1.T C3N-02786 GBM miRNA-Seq tumor CPT0206230009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L008_R1_001.unaln.bam 123467151 BAM S33_L008_R1 unaligned CPTAC3 fc3d517e-2d36-4d44-a368-3aa8fa15bdda 05608983ef40f579939521dca4d6c140 {"aliquot_tag": "ALQ_2655210e", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02786.miRNA-Seq.T.hg38 C3N-02786 GBM miRNA-Seq tumor CPT0206230009 c5bc20f2-9463-42ae-9764-29da636702b5_mirnaseq_gdc_realn.bam 143375204 BAM harmonized CPTAC3 1ea5c6ed-9348-4172-b93a-415cc10ef27b 4fcc7525d77cac45ec1e28a3e28a3044 {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor"} -C3N-02786.RNA-Seq.chimeric.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.chimeric.gdc_realn.bam 44649931 BAM chimeric harmonized CPTAC3 fddb2d18-62cf-4040-80a7-5010c7021fac 3f959030450e22526074ae4eb3c2eb34 {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor"} -C3N-02786.RNA-Seq.genomic.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.genomic.gdc_realn.bam 8848301429 BAM genomic harmonized CPTAC3 51ec9900-90a3-47c2-aa23-25c493fa373c 7e236e6bb6b84603e292ca121a0fad71 {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor"} -C3N-02786.RNA-Seq.S32_L008_R1.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R1_001.fastq.gz 4067842049 FASTQ S32_L008_R1 unaligned CPTAC3 66a24337-0fb5-41bb-bf11-2fcb9a06f88e 82a334f5a30e2a5dc1d354e295627e85 {"aliquot_tag": "ALQ_2655210e", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02786.RNA-Seq.S32_L008_R2.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R2_001.fastq.gz 4274543264 FASTQ S32_L008_R2 unaligned CPTAC3 6fd2a712-9c61-4898-8ead-f530d7757699 e79a33aba5fc9e82eefb1634529bfb25 {"aliquot_tag": "ALQ_2655210e", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02786.RNA-Seq.transcriptome.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.transcriptome.gdc_realn.bam 10253695683 BAM transcriptome harmonized CPTAC3 1abf2e63-a23c-41f9-802e-2d594ef0afae 300238bf4d05de51bd97f5307c9bff1a {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor"} -C3N-02786.WGS.N C3N-02786 GBM WGS blood_normal CPT0206280002 CPT0206280002.WholeGenome.RP-1303.bam 61607903575 BAM aligned CPTAC3 9463ccfb-46b1-4a4a-b78f-ecafd6281e95 a16a0a3241c16594a8cd20f1f47deefe {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal"} -C3N-02786.WGS.N.hg38 C3N-02786 GBM WGS blood_normal CPT0206280002 66d7fa25-dd36-444f-be45-50698701694a_wgs_gdc_realn.bam 89406270565 BAM harmonized CPTAC3 8311c988-d841-4323-a7d2-dae23167d9dd ab046d58389160cbbb0b66c62ce3779f {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal"} -C3N-02786.WGS.T C3N-02786 GBM WGS tumor CPT0206230006 CPT0206230006.WholeGenome.RP-1303.bam 62206339052 BAM aligned CPTAC3 8ebce501-a905-4c5c-87af-b560f1aefecf aa2374f1d507b3936a5fec437b7d7786 {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor"} -C3N-02786.WGS.T.hg38 C3N-02786 GBM WGS tumor CPT0206230006 b169e6e6-a391-4fe4-853c-5b74726d30b5_wgs_gdc_realn.bam 91154226131 BAM harmonized CPTAC3 09a5afba-92a9-4212-8027-41a7474e2b71 824ec9066f78fb1ebea976ce546441a1 {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor"} -C3N-02786.WXS.N C3N-02786 GBM WXS blood_normal CPT0206280002 CPT0206280002.WholeExome.RP-1303.bam 22670789223 BAM aligned CPTAC3 89d26971-bc6d-4f04-a8a1-3b40a63e89c6 248862208e2aa9557d0a92567986cca3 {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal"} -C3N-02786.WXS.N.hg38 C3N-02786 GBM WXS blood_normal CPT0206280002 66d7fa25-dd36-444f-be45-50698701694a_wxs_gdc_realn.bam 31366491796 BAM harmonized CPTAC3 6dc8a3c2-fcf3-454e-a7ff-c7d68221afe5 28af64d28af8ddc78cdb71eae1ea2363 {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal"} -C3N-02786.WXS.T C3N-02786 GBM WXS tumor CPT0206230006 CPT0206230006.WholeExome.RP-1303.bam 27544379285 BAM aligned CPTAC3 4aaf1a8b-99be-434e-ac59-5a5a2f2a864a b2c27ab1e78a2d0537279ce1cbb3056d {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor"} -C3N-02786.WXS.T.hg38 C3N-02786 GBM WXS tumor CPT0206230006 b169e6e6-a391-4fe4-853c-5b74726d30b5_wxs_gdc_realn.bam 38576985968 BAM harmonized CPTAC3 a22d1da6-bddf-4798-b4bd-07a0832c9da1 fce347207dbc2ab3a6b21e2e39e7f535 {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor"} -C3N-02788.MethArray.Green.T C3N-02788 GBM Methylation_Array tumor CPT0206350009 203219650174_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5669638e-6bc7-4b39-b8a0-320bd26e9035 03be6c29a0ff8e288936e7a8c106021b {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor"} -C3N-02788.MethArray.Red.T C3N-02788 GBM Methylation_Array tumor CPT0206350009 203219650174_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 0d3fb5d5-ceab-4dd9-be3a-c7bb00e45db0 691f32a60513b476c140113a121b7e62 {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor"} -C3N-02788.miRNA-Seq.S25_L004_R1.T C3N-02788 GBM miRNA-Seq tumor CPT0206350006 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGAGC_S25_L004_R1_001.unaln.bam 212225468 BAM S25_L004_R1 unaligned CPTAC3 32ffb60a-e650-47d6-8cd1-5b654f13fff0 17c79e85590449a45ffb9333e3a7bd68 {"aliquot_tag": "ALQ_f2f61a9a", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02788.miRNA-Seq.T.hg38 C3N-02788 GBM miRNA-Seq tumor CPT0206350006 54ef412e-a7e4-4666-b0f3-0107a6a9acc0_mirnaseq_gdc_realn.bam 237797263 BAM harmonized CPTAC3 dac01cac-6b67-4bf0-8ef7-8f5f96fb5b79 74e27b7a1d12a09865a029d58dbd9c9a {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_7db6ef3a.MethArray.Green.T C3N-02788 GBM Methylation_Array tumor CPT0206330006 203561450100_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a11904d0-8eaf-4ef1-9483-c0cf3d6efa82 b6b9e3c6da94f87e916c4e1d7c7969b0 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_7db6ef3a.MethArray.Red.T C3N-02788 GBM Methylation_Array tumor CPT0206330006 203561450100_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 887629ca-f957-4dbf-88e1-c76a23b853a2 83ca5d788cac6d79cae3abbf51e76db5 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_7db6ef3a.WGS.T C3N-02788 GBM WGS tumor CPT0206330006 CPT0206330006.WholeGenome.RP-1303.bam 64019815472 BAM aligned CPTAC3 1a6c06bd-b790-442e-8c91-4f8057a89275 bca81d47d116b0dd7048c7471f6122e9 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_7db6ef3a.WGS.T.hg38 C3N-02788 GBM WGS tumor CPT0206330006 7abd92d0-2c6c-4fe7-a411-32349d22d560_wgs_gdc_realn.bam 91320411824 BAM harmonized CPTAC3 2929e7c9-d068-40e3-b84d-071b68f43ca8 305e7bed5e096c6fa6739b99d205ef5a {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_7db6ef3a.WXS.T C3N-02788 GBM WXS tumor CPT0206330006 CPT0206330006.WholeExome.RP-1303.bam 24969782426 BAM aligned CPTAC3 963d1033-d6d6-43c9-9cdb-86dffd33b25f f66cf8f01d62df74a98fc0c6264593e7 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_7db6ef3a.WXS.T.hg38 C3N-02788 GBM WXS tumor CPT0206330006 7abd92d0-2c6c-4fe7-a411-32349d22d560_wxs_gdc_realn.bam 33937652781 BAM harmonized CPTAC3 4865666f-0144-4dc2-8d12-0ea2061e80e7 f863637b28d5b10c081ac651638f5f61 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_ed09f2ab.miRNA-Seq.S20_L006_R1.T C3N-02788 GBM miRNA-Seq tumor CPT0206330009 190712_UNC32-K00270_0192_BH7HL3BBXY_TATAAT_S20_L006_R1_001.unaln.bam 249498216 BAM S20_L006_R1 unaligned CPTAC3 25a3e5fd-e370-47a6-966d-0c0383465e5e 57e30b4c2d050098ccc339253078f18b {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_ed09f2ab.miRNA-Seq.T.hg38 C3N-02788 GBM miRNA-Seq tumor CPT0206330009 e9a7f315-2214-4b4e-a9bd-19be335a1d95_mirnaseq_gdc_realn.bam 277630523 BAM harmonized CPTAC3 d861cbe4-15f7-4707-82a0-64f2dc16e953 3b4fe7d1145f776d61de645e627e8db5 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_ed09f2ab.RNA-Seq.chimeric.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.chimeric.gdc_realn.bam 59797032 BAM chimeric harmonized CPTAC3 ffbeaa5d-55c2-4337-8cf9-2f6a32503cf4 0ded8ff55853dda49215a5b6ee50a397 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_ed09f2ab.RNA-Seq.genomic.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.genomic.gdc_realn.bam 11269058877 BAM genomic harmonized CPTAC3 a42a15eb-ecfc-4cb4-8548-5fe25f3e7934 db2977eb6e13939b9ad20c585e7ecdbc {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_ed09f2ab.RNA-Seq.S5_L002_R1.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R1_001.fastq.gz 4684053431 FASTQ S5_L002_R1 unaligned CPTAC3 7bf21101-629d-4259-9f38-bfe43c0d53fc c49453e0b5b74b6319d52cc63db777fb {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_ed09f2ab.RNA-Seq.S5_L002_R2.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R2_001.fastq.gz 5280082406 FASTQ S5_L002_R2 unaligned CPTAC3 a9dca933-ce7f-4c10-baf2-71e0ac9d55b4 aebec0339799c517d34032a504b8a6d1 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02788.REP_ed09f2ab.RNA-Seq.transcriptome.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.transcriptome.gdc_realn.bam 10855362272 BAM transcriptome harmonized CPTAC3 f75cf70b-6d6e-425a-a5df-8632df0e14c9 76c29e2cb0030eccec04c4c26bde2e97 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor"} -C3N-02788.RNA-Seq.chimeric.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.chimeric.gdc_realn.bam 198910017 BAM chimeric harmonized CPTAC3 ab06f778-5a29-4f14-b75b-298e36d4ebe8 d82bcf72556377cb09553a3fedcb45ff {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor"} -C3N-02788.RNA-Seq.genomic.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.genomic.gdc_realn.bam 9975497060 BAM genomic harmonized CPTAC3 62179a40-8513-44ab-82bd-574fe33f0471 d41f1ba9aa358ddcf5f3376b6d2a472f {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor"} -C3N-02788.RNA-Seq.S2_L008_R1.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R1_001.fastq.gz 4658025764 FASTQ S2_L008_R1 unaligned CPTAC3 62b1b0ce-4eb2-46d2-94d8-aee595b6d77b 53957fcb41603b6eeaa1b0ed02eff4e6 {"aliquot_tag": "ALQ_f2f61a9a", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02788.RNA-Seq.S2_L008_R2.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R2_001.fastq.gz 4762905703 FASTQ S2_L008_R2 unaligned CPTAC3 146465b8-09cb-4b1c-966b-cb5ac56598eb e813c1293b66bca19b82431de76bc308 {"aliquot_tag": "ALQ_f2f61a9a", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02788.RNA-Seq.transcriptome.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.transcriptome.gdc_realn.bam 11075739003 BAM transcriptome harmonized CPTAC3 cada5703-567e-4834-bb3e-8a818122614e b121ffc8ba2e7f0e91d5deeac2246549 {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor"} -C3N-02788.WGS.N C3N-02788 GBM WGS blood_normal CPT0206390002 CPT0206390002.WholeGenome.RP-1303.bam 60760463962 BAM aligned CPTAC3 ade8f2ff-6eb1-4b41-aba0-911969d177c6 cb7beb43aac83f4a7acdba0150a96f78 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal"} -C3N-02788.WGS.N.hg38 C3N-02788 GBM WGS blood_normal CPT0206390002 784b8eee-0d64-4a0c-bb26-694e63127598_wgs_gdc_realn.bam 88933770661 BAM harmonized CPTAC3 9cee893d-bbe8-4f6b-a08f-e20512c97679 169cee23bf7ccae1077aa4a468bef708 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal"} -C3N-02788.WGS.T C3N-02788 GBM WGS tumor CPT0206350009 CPT0206350009.WholeGenome.RP-1303.bam 61474194371 BAM aligned CPTAC3 53085456-74c5-4b93-b477-992efe9741ca 1f7070aed1031acd780af7d88108d9bc {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor"} -C3N-02788.WGS.T.hg38 C3N-02788 GBM WGS tumor CPT0206350009 aa167109-bd98-4b3b-99d8-019e11e988f5_wgs_gdc_realn.bam 89085921042 BAM harmonized CPTAC3 1033d5bc-bb5c-4819-b984-d13b2b2a18bc 480e1a27c306ea77d7d7c2d15d53329c {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor"} -C3N-02788.WXS.N C3N-02788 GBM WXS blood_normal CPT0206390002 CPT0206390002.WholeExome.RP-1303.bam 31488877550 BAM aligned CPTAC3 e8ead195-f58b-4e4b-af3f-e9db12f423a2 6b9a922b357f4350f060c62171cb5656 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal"} -C3N-02788.WXS.N.hg38 C3N-02788 GBM WXS blood_normal CPT0206390002 784b8eee-0d64-4a0c-bb26-694e63127598_wxs_gdc_realn.bam 43614585993 BAM harmonized CPTAC3 c488d878-1022-4929-890c-4b0615bcf063 a81a86f0a07f20ef6ac34617a9de2819 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal"} -C3N-02788.WXS.T C3N-02788 GBM WXS tumor CPT0206350009 CPT0206350009.WholeExome.RP-1303.bam 23580643355 BAM aligned CPTAC3 00de89fa-7389-4ba6-844d-98f63189499a 42a2d5e7ae3764e6edc20f405213b9ac {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor"} -C3N-02788.WXS.T.hg38 C3N-02788 GBM WXS tumor CPT0206350009 aa167109-bd98-4b3b-99d8-019e11e988f5_wxs_gdc_realn.bam 32212172650 BAM harmonized CPTAC3 34dc6412-ae30-444d-8683-2be9eb0f0924 8695d825ebfba5ea1c91facd86be22b2 {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor"} -C3N-02789.DUP_aadf5570.WGS.T C3N-02789 UCEC WGS tumor CPT0186010007_1 CPT0186010007_1.WholeGenome.RP-1303.bam 64519562640 BAM aligned CPTAC3 803773e3-b365-46f1-89b9-126be88a2364 752af37204382c3cb9b1b3c4fb084d74 {"aliquot_tag": "DUP_aadf5570", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3N-02789.DUP_aadf5570.WGS.T.hg38 C3N-02789 UCEC WGS tumor CPT0186010007_1 e9de4564-6c8b-43c7-9f3a-119a8cdc4596_wgs_gdc_realn.bam 96197335427 BAM harmonized CPTAC3 d73392c9-6706-4d86-8623-33af6e9e8311 5dc1ca21d48116b85876da7b009d908a {"aliquot_tag": "DUP_aadf5570", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor"} -C3N-02789.MethArray.Green.T C3N-02789 UCEC Methylation_Array tumor CPT0186010007 203561620153_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 194d7685-bab1-430f-b1ad-563694a8225e 89bc9adf7abb44225b56f041eb66ce7b {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor"} -C3N-02789.MethArray.Red.T C3N-02789 UCEC Methylation_Array tumor CPT0186010007 203561620153_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 bb9d450f-8c89-4f3a-bad8-b9873f5afc07 ba8046f4d434b50dcd2fad83a7f2112e {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor"} -C3N-02789.miRNA-Seq.S19_L003_R1.T C3N-02789 UCEC miRNA-Seq tumor CPT0186010010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 204083880 BAM S19_L003_R1 unaligned CPTAC3 a6085fa8-9081-4796-9d0a-5252cbf3c3de 37ae8054e5775e6ca66ef4be32934149 {"aliquot_tag": "ALQ_9bf27df0", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02789.miRNA-Seq.T.hg38 C3N-02789 UCEC miRNA-Seq tumor CPT0186010010 01a62d3e-e905-4099-a6e1-247f37119995_mirnaseq_gdc_realn.bam 225741221 BAM harmonized CPTAC3 72ed1975-1adb-4e9b-a6ba-4efa06042e46 fd5a7a61c6d7139aacbbbed2e1351414 {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.chimeric.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.chimeric.gdc_realn.bam 33768476 BAM chimeric harmonized CPTAC3 7df404c6-0f75-4b20-97bb-3384d3dbf648 16181001315d9990d438930c2bc0f6f1 {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.chimeric.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.chimeric.gdc_realn.bam 167624464 BAM chimeric harmonized CPTAC3 0c481972-56d6-405d-9b39-53bc9831f492 39105220c6cad24238dea17864640618 {"aliquot_tag": "ALQ_b24e06f7", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.genomic.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.genomic.gdc_realn.bam 7962165720 BAM genomic harmonized CPTAC3 3b96c9f9-0574-4945-b109-00dae4c3ad89 7e6cc52b8ad5954028c459367ebcb81b {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.genomic.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.genomic.gdc_realn.bam 9689522511 BAM genomic harmonized CPTAC3 5f175c78-95d3-4612-9415-6226141e4c95 7c9bf8e6aeb2df8f12ded89f659f5523 {"aliquot_tag": "ALQ_b24e06f7", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.S21_L006_R1.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R1_001.fastq.gz 3840472252 FASTQ S21_L006_R1 unaligned CPTAC3 4353b2fe-1b21-4707-b307-e3d8cadc9c4e f0094d315338c4b3b5d65be9ac6173b2 {"aliquot_tag": "ALQ_9bf27df0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.S21_L006_R2.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R2_001.fastq.gz 4376535516 FASTQ S21_L006_R2 unaligned CPTAC3 918aaf2f-e742-4f07-ae31-805fa1810d60 a3fb0f7bbcc71db617ed4fbe88e7ca03 {"aliquot_tag": "ALQ_9bf27df0", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.S43_R1.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R1_001.fastq.gz 4681302026 FASTQ S43_R1 unaligned CPTAC3 59cad0cc-d9ea-42f5-b61a-2f69b4d8593d e4195f6a44cf447d86914539e4375668 {"aliquot_tag": "ALQ_b24e06f7", "sample": "S43", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.S43_R2.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R2_001.fastq.gz 4906743791 FASTQ S43_R2 unaligned CPTAC3 def093bb-aae7-4785-87a7-b6379d1a72d2 2f165981905e7b0d450f9c1ceac5da87 {"aliquot_tag": "ALQ_b24e06f7", "sample": "S43", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.transcriptome.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.transcriptome.gdc_realn.bam 8986346622 BAM transcriptome harmonized CPTAC3 02964aac-5615-47db-8984-de0c7be713d0 45efba9b76b6c5e70dac328ae73e3083 {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor"} -C3N-02789.RNA-Seq.transcriptome.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.transcriptome.gdc_realn.bam 4315782139 BAM transcriptome harmonized CPTAC3 8b8202c4-26d2-49dc-8972-b025374cfff9 1acbd56025eb82d260cc1e29dfb2e671 {"aliquot_tag": "ALQ_b24e06f7", "gdc_sample_type": "Primary Tumor"} -C3N-02789.WGS.N C3N-02789 UCEC WGS blood_normal CPT0187210002 CPT0187210002.WholeGenome.RP-1303.bam 79142145455 BAM aligned CPTAC3 6d3b1cec-18c2-4257-8d2b-fe521f141e8c 2129a0dc07788c613c10c95deb32b3e0 {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal"} -C3N-02789.WGS.N.hg38 C3N-02789 UCEC WGS blood_normal CPT0187210002 41120db2-190d-4f48-8307-5840b7e0610d_wgs_gdc_realn.bam 116123753565 BAM harmonized CPTAC3 264e1112-48d6-4989-85da-c03dddc49fa0 2699e880cbd5db607d960e7834130dad {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal"} -C3N-02789.WGS.T C3N-02789 UCEC WGS tumor CPT0186010007 CPT0186010007.WholeGenome.RP-1303.bam 28213945581 BAM aligned CPTAC3 a0ba6e02-f0fb-49b2-ac43-1bf1c9bc0cb9 3841e3e61ac59c2dd9d549275f92f57a {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor"} -C3N-02789.WGS.T.hg38 C3N-02789 UCEC WGS tumor CPT0186010007 5af68a3a-43ce-4fa5-b95f-8da01877a691_wgs_gdc_realn.bam 39495453557 BAM harmonized CPTAC3 31ae0c8a-854b-41fa-b8f2-227cc7d65668 af073db46b3b275de4d5a1ddce8425f8 {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor"} -C3N-02789.WXS.N C3N-02789 UCEC WXS blood_normal CPT0187210002 CPT0187210002.WholeExome.RP-1303.bam 21508410557 BAM aligned CPTAC3 7982581b-e60f-4058-a1b7-d22d10f60bcd 9cb6d1bd7def967af3aa0e0f267faa30 {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal"} -C3N-02789.WXS.N.hg38 C3N-02789 UCEC WXS blood_normal CPT0187210002 41120db2-190d-4f48-8307-5840b7e0610d_wxs_gdc_realn.bam 29147050827 BAM harmonized CPTAC3 b193b9a0-4631-4924-b066-76f4ef235502 15c6c692c131187b4c971630857519f3 {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal"} -C3N-02789.WXS.T C3N-02789 UCEC WXS tumor CPT0186010007 CPT0186010007.WholeExome.RP-1303.bam 28213945651 BAM aligned CPTAC3 2dc04940-397f-4705-9f67-14f49da09c3b 868d5e3abb8bca7aff5bfc537f4a6fc3 {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor"} -C3N-02789.WXS.T.hg38 C3N-02789 UCEC WXS tumor CPT0186010007 5af68a3a-43ce-4fa5-b95f-8da01877a691_wxs_gdc_realn.bam 39933077809 BAM harmonized CPTAC3 5aa8e920-315c-4a75-960f-54b06912867e bbd609931cb9312ee6d3c5061dea10b4 {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor"} -C3N-02811.MethArray.Green.A C3N-02811 CCRCC Methylation_Array tissue_normal CPT0158410006 204930640023_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f6d8405b-cab4-426c-9877-d2919cbe667e e2c39cb59d943a2af585d0f42974b75b {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.MethArray.Green.T C3N-02811 CCRCC Methylation_Array tumor CPT0158390009 203219640133_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 67f0a901-ed7e-41a9-906b-9466af6ae407 ba3b67a02d00682c8bc79b9f31ee0581 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor"} -C3N-02811.MethArray.Red.A C3N-02811 CCRCC Methylation_Array tissue_normal CPT0158410006 204930640023_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 70ef9be1-0ad8-454f-a5f1-ebc7badf3eca e50cfffcbb63d52835044cb46af059e4 {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.MethArray.Red.T C3N-02811 CCRCC Methylation_Array tumor CPT0158390009 203219640133_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 71c1c131-33c9-4526-8fb3-43f0d8b46f6d d55e8fbac73ca76a4b8d9a75b68fc0fd {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor"} -C3N-02811.miRNA-Seq.A.hg38 C3N-02811 CCRCC miRNA-Seq tissue_normal CPT0158410009 0f50c5c9-4613-4958-a40b-370bdb019d29_mirnaseq_gdc_realn.bam 300589381 BAM harmonized CPTAC3 daaeb615-efaa-409d-8cc3-0f72a154cd9f 3f4e424ac7c7926a4f4b85feda969cbc {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.miRNA-Seq.S32_L005_R1.A C3N-02811 CCRCC miRNA-Seq tissue_normal CPT0158410009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L005_R1_001.unaln.bam 276558404 BAM S32_L005_R1 unaligned CPTAC3 77139397-2b5b-4ce2-9b48-f7b98e1aecc9 b0ac537c28cf8faa87db8a7dbf404cfd {"aliquot_tag": "ALQ_ab9ed88f", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.miRNA-Seq.S40_L005_R1.T C3N-02811 CCRCC miRNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTCAGA_S40_L005_R1_001.unaln.bam 187805973 BAM S40_L005_R1 unaligned CPTAC3 345eba3e-b484-4a34-80b7-7402c65e3768 d102a6705ded0a1b7867c6d522cf3249 {"aliquot_tag": "ALQ_1654be67", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02811.miRNA-Seq.T.hg38 C3N-02811 CCRCC miRNA-Seq tumor CPT0158390006 28df4fa1-5aa3-4b2d-96b1-423be0fa872b_mirnaseq_gdc_realn.bam 201259133 BAM harmonized CPTAC3 4af03392-11e9-4708-95f7-7bb87b36c285 48e7586ece76b58d8c160ef83096fb9e {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor"} -C3N-02811.RNA-Seq.chimeric.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.chimeric.gdc_realn.bam 31730782 BAM chimeric harmonized CPTAC3 e6e9d6f8-c26c-4900-bfe3-12afeed2e7c1 11542fb2a462a5c319cc8939ac32fc1c {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.RNA-Seq.chimeric.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.chimeric.gdc_realn.bam 44252927 BAM chimeric harmonized CPTAC3 b873906c-b351-4fef-89d9-164a3e100405 571f337b4e698d4e95507ed717ce6d2e {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor"} -C3N-02811.RNA-Seq.genomic.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.genomic.gdc_realn.bam 7984114021 BAM genomic harmonized CPTAC3 cea9d722-25d6-449f-bed4-14d0dc8b0a9c 449c30c44ce2252f0075cd6b6065859e {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.RNA-Seq.genomic.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.genomic.gdc_realn.bam 9500027894 BAM genomic harmonized CPTAC3 16e8bee5-4b06-4fdb-91a5-873daae33c91 05ccd03a9e12ee2a80ec74c331b5f83f {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor"} -C3N-02811.RNA-Seq.S20_L005_R1.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R1_001.fastq.gz 4557259586 FASTQ S20_L005_R1 unaligned CPTAC3 a04b4675-67f5-4a91-a37c-169b2428ac2f 2824db59eced80eb7e5055916718fd75 {"aliquot_tag": "ALQ_1654be67", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02811.RNA-Seq.S20_L005_R2.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R2_001.fastq.gz 4584500003 FASTQ S20_L005_R2 unaligned CPTAC3 b719c08a-a980-48c4-ad4a-07b6977628a4 801e02259076fdb71c8c22768dd1db22 {"aliquot_tag": "ALQ_1654be67", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02811.RNA-Seq.S22_L006_R1.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 3677409445 FASTQ S22_L006_R1 unaligned CPTAC3 927aa7e2-0377-4b1c-8415-aacc3446a97a 544826926ca09db9dd98661c58876357 {"aliquot_tag": "ALQ_ab9ed88f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.RNA-Seq.S22_L006_R2.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3912059478 FASTQ S22_L006_R2 unaligned CPTAC3 c225e3db-6ce8-43d0-a1fe-11fd3669cfa2 652b6627df8413c397d314773b2e0d2e {"aliquot_tag": "ALQ_ab9ed88f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.RNA-Seq.transcriptome.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.transcriptome.gdc_realn.bam 10007143618 BAM transcriptome harmonized CPTAC3 6e22bb58-31bf-4eb8-968e-1f88d75595a9 b1675a01dfb3d63e0cf3e6b7972de778 {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.RNA-Seq.transcriptome.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.transcriptome.gdc_realn.bam 13014056943 BAM transcriptome harmonized CPTAC3 69d1cc66-75aa-4889-9c35-96479bd2c673 9ad3ee0082bca4055f4ed11728869908 {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor"} -C3N-02811.WGS.N C3N-02811 CCRCC WGS blood_normal CPT0159420002 CPT0159420002.WholeGenome.RP-1303.bam 119602612980 BAM aligned CPTAC3 7474c1b1-bfca-4ede-9a45-3e1ec326da5f a787d097be4e1d9b9b8997e19bb79c3c {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal"} -C3N-02811.WGS.N.hg38 C3N-02811 CCRCC WGS blood_normal CPT0159420002 ad7c9f0f-faad-492c-b2d3-9d5c3d08b19d_wgs_gdc_realn.bam 176045800696 BAM harmonized CPTAC3 c8479063-f347-401d-b0a7-c85a5e696724 4a168439eac553b3152a3a9b94d8d4fa {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal"} -C3N-02811.WGS.T C3N-02811 CCRCC WGS tumor CPT0158390009 CPT0158390009.WholeGenome.RP-1303.bam 102404679838 BAM aligned CPTAC3 e4f7d866-71d3-4bc1-bb15-20d7561ed861 a31de49e0500f55039a8181d92bab901 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor"} -C3N-02811.WGS.T.hg38 C3N-02811 CCRCC WGS tumor CPT0158390009 88476837-1b91-4542-b13b-a1011013deb2_wgs_gdc_realn.bam 149445577439 BAM harmonized CPTAC3 7f55b9b6-78ad-4679-9d15-2d9da3450f9a 99e3a8071562c82fcefea01ff20cc8e2 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor"} -C3N-02811.WXS.A C3N-02811 CCRCC WXS tissue_normal CPT0158410006 CPT0158410006.WholeExome.RP-1303.bam 21007355981 BAM aligned CPTAC3 3186fdee-7f19-4bf6-9760-6f3c94b0ecc5 005e7fb98b33dd527b095769708a1f72 {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.WXS.A.hg38 C3N-02811 CCRCC WXS tissue_normal CPT0158410006 83907aef-9c39-4898-93dd-394819a8f838_wxs_gdc_realn.bam 28669913867 BAM harmonized CPTAC3 2e334aa4-0b96-4bb4-8ecf-7872cf6e5af2 f9a0e3ce5caab643c902a8eb3b9bda7c {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02811.WXS.N C3N-02811 CCRCC WXS blood_normal CPT0159420002 CPT0159420002.WholeExome.RP-1303.bam 20948483906 BAM aligned CPTAC3 8d0347f0-fa4e-478e-b6be-44b6109db8c9 99ca347c0ca85f8fa312d825fd220f41 {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal"} -C3N-02811.WXS.N.hg38 C3N-02811 CCRCC WXS blood_normal CPT0159420002 ad7c9f0f-faad-492c-b2d3-9d5c3d08b19d_wxs_gdc_realn.bam 29074604235 BAM harmonized CPTAC3 f238cfbc-ac5f-4c34-b507-62d86e777a35 3efd21de6dd85fe39556c255eeb620cc {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal"} -C3N-02811.WXS.T C3N-02811 CCRCC WXS tumor CPT0158390009 CPT0158390009.WholeExome.RP-1303.bam 27034290043 BAM aligned CPTAC3 00427998-cda2-4a65-899a-b56f42187af2 6949d9b3d3f5ad06e237f49daf5dd2e3 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor"} -C3N-02811.WXS.T.hg38 C3N-02811 CCRCC WXS tumor CPT0158390009 88476837-1b91-4542-b13b-a1011013deb2_wxs_gdc_realn.bam 36815738995 BAM harmonized CPTAC3 dc2613d5-6e81-45dd-95a7-493971ba8258 5d46d84aa735933a90b5ccb418bfafb2 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor"} -C3N-02818.MethArray.Green.T C3N-02818 CCRCC Methylation_Array tumor CPT0384570009 205555380161_R04C01_Grn.idat 13677960 IDAT Green NA CPTAC3 f66ad155-c0c3-4724-85a6-c395916ea216 58c134c42021179fc423058fb6d09ce8 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor"} -C3N-02818.MethArray.Red.T C3N-02818 CCRCC Methylation_Array tumor CPT0384570009 205555380161_R04C01_Red.idat 13677960 IDAT Red NA CPTAC3 85693193-4ef1-4a48-96a4-5ef358edb4d5 6c41236f2f198fde7fd065fb16a51368 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor"} -C3N-02818.miRNA-Seq.A.hg38 C3N-02818 CCRCC miRNA-Seq tissue_normal CPT0384610006 e225c426-0fe3-464c-ac98-04d625fcbce1_mirnaseq_gdc_realn.bam 337761733 BAM harmonized CPTAC3 063534ce-d048-4e9d-abb2-3263c03546de 732c88cee855ffcad2ea42c2754a7570 {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02818.miRNA-Seq.S16_L001_R1.T C3N-02818 CCRCC miRNA-Seq tumor CPT0384570006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTCCGC_S16_L001_R1_001.unaln.bam 215995441 BAM S16_L001_R1 unaligned CPTAC3 7d8c36ce-c32e-4036-a17b-7bf50b3024c3 6ece375108e18f282668be2890be453c {"aliquot_tag": "ALQ_d6eb438", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02818.miRNA-Seq.S17_L001_R1.A C3N-02818 CCRCC miRNA-Seq tissue_normal CPT0384610006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTGAAA_S17_L001_R1_001.unaln.bam 311724381 BAM S17_L001_R1 unaligned CPTAC3 65e74d04-ad08-4cc9-bea3-97ad73227b96 f819a147db0d726aece1f39f6cf2bec7 {"aliquot_tag": "ALQ_4ba3336", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02818.miRNA-Seq.T.hg38 C3N-02818 CCRCC miRNA-Seq tumor CPT0384570006 87abcf75-a32b-4d8c-b5a5-a6e6e5c4e281_mirnaseq_gdc_realn.bam 236636652 BAM harmonized CPTAC3 6a9ac40f-b99d-402a-8b85-2da9bcdd72dc 7b950ee42bbbbc76ebfd1b19693f730c {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor"} -C3N-02818.RNA-Seq.chimeric.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.chimeric.gdc_realn.bam 224862519 BAM chimeric harmonized CPTAC3 35058dd8-4c03-40f8-b804-3768f28db709 b93f2ddca27b2a75f3c39d866cd4e568 {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02818.RNA-Seq.chimeric.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.chimeric.gdc_realn.bam 434102748 BAM chimeric harmonized CPTAC3 b64fceda-d4fd-4a2d-a1d8-14817a4b4285 22ba2996713d80d86b01107977ae351c {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor"} -C3N-02818.RNA-Seq.genomic.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.genomic.gdc_realn.bam 9857763682 BAM genomic harmonized CPTAC3 92b133d9-63e9-4d96-9306-7476b5830497 a3f4eb65f78c8a375dc167bbe0c7340c {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02818.RNA-Seq.genomic.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.genomic.gdc_realn.bam 8476752132 BAM genomic harmonized CPTAC3 2e604fe5-33db-47e2-8b1f-bfcd38f875c1 b921a7b418d15fc10699e49b3c4e8cf5 {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor"} -C3N-02818.RNA-Seq.S17_L005_R1.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R1_001.fastq.gz 4652492930 FASTQ S17_L005_R1 unaligned CPTAC3 008a349f-e929-4ac0-a320-561848d92de1 04daf7a06d2e7414d3565a11acd8af60 {"aliquot_tag": "ALQ_4ba3336", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02818.RNA-Seq.S17_L005_R2.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R2_001.fastq.gz 5208089217 FASTQ S17_L005_R2 unaligned CPTAC3 8aeb4e95-6ee9-409a-a0d7-6690046dbcbb 9c7f4af89ca048cf9f7cd3d13257d2e2 {"aliquot_tag": "ALQ_4ba3336", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02818.RNA-Seq.S18_L005_R1.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R1_001.fastq.gz 3892192304 FASTQ S18_L005_R1 unaligned CPTAC3 32f88dd1-ca34-4867-9152-377b436b327d 533e4bd41144f62e7ee780063b1e1b91 {"aliquot_tag": "ALQ_d6eb438", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02818.RNA-Seq.S18_L005_R2.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R2_001.fastq.gz 4470571382 FASTQ S18_L005_R2 unaligned CPTAC3 c9319c6c-68b1-4159-af09-cfb368f3d9d9 e9117d080dda5b7ffaf72733d7dbc975 {"aliquot_tag": "ALQ_d6eb438", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02818.RNA-Seq.transcriptome.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.transcriptome.gdc_realn.bam 10859331897 BAM transcriptome harmonized CPTAC3 c4f67472-83bd-414d-86ab-51b08e99326d dd1e451040d5589658980a9770df4f70 {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02818.RNA-Seq.transcriptome.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.transcriptome.gdc_realn.bam 10018906579 BAM transcriptome harmonized CPTAC3 c717ed2d-6ac2-4a29-baa8-96e5fa81dcc0 575fe1ddce2183579d8d35a3aca27dfe {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor"} -C3N-02818.WGS.N C3N-02818 CCRCC WGS blood_normal CPT0385440002 CPT0385440002.WholeGenome.RP-2158.bam 23576810784 BAM aligned CPTAC3 a6ca1392-73b2-4e33-880a-73456b8d06cd b64925593b677ec6d84fc58f58d3620e {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02818.WGS.N.hg38 C3N-02818 CCRCC WGS blood_normal CPT0385440002 92998ab3-9aab-4c07-9d25-c4208aae1d07_wgs_gdc_realn.bam 72526670197 BAM harmonized CPTAC3 84ffccb6-332d-4cae-98ef-9b28c63857b3 44a0783bd90724f728a43c7d80f8b5ec {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02818.WGS.T C3N-02818 CCRCC WGS tumor CPT0384570009 CPT0384570009.WholeGenome.RP-2158.bam 24307267996 BAM aligned CPTAC3 24abdf0a-b891-45f1-b35b-25a6c725ab0a a99e501ee02944d7ce1fd17288a049ae {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor"} -C3N-02818.WGS.T.hg38 C3N-02818 CCRCC WGS tumor CPT0384570009 45108c83-67fe-47cd-a376-8038e5346144_wgs_gdc_realn.bam 72943686301 BAM harmonized CPTAC3 8ea48cc6-6c33-445f-92a7-69c9f7893642 eaf442fcedae8ff1bae49bb3867da511 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor"} -C3N-02818.WXS.N C3N-02818 CCRCC WXS blood_normal CPT0385440002 CPT0385440002.WholeExome.RP-1303.bam 24792142776 BAM aligned CPTAC3 28a2132e-2896-47eb-8baf-0fc1d9ff3647 d0b52f7064d28ab475400356cda335f0 {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02818.WXS.N.hg38 C3N-02818 CCRCC WXS blood_normal CPT0385440002 92998ab3-9aab-4c07-9d25-c4208aae1d07_wxs_gdc_realn.bam 34163580049 BAM harmonized CPTAC3 3541c639-e82e-4c65-8589-9f9ca6db0a08 1d251830648cb63d380a3297433fb8ec {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-02818.WXS.T C3N-02818 CCRCC WXS tumor CPT0384570009 CPT0384570009.WholeExome.RP-1303.bam 27985678904 BAM aligned CPTAC3 1e8251e9-ec23-43ca-8e0e-38a56ebdf147 bef220a3bc4f0c5cba27940d8c82c6bc {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor"} -C3N-02818.WXS.T.hg38 C3N-02818 CCRCC WXS tumor CPT0384570009 45108c83-67fe-47cd-a376-8038e5346144_wxs_gdc_realn.bam 38620135795 BAM harmonized CPTAC3 5b969522-9fea-4ec3-acd6-b0abcbe46294 d3471892f40b6ba7882fad553fc56777 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor"} -C3N-02828.MethArray.Green.A C3N-02828 LUAD Methylation_Array tissue_normal CPT0215770006 203561450084_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b0234b52-0f2c-4f07-a2de-619c1d385319 818ac068f6fc4ce1ee7ee530eeff4013 {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.MethArray.Green.T C3N-02828 LUAD Methylation_Array tumor CPT0215730006 203273630258_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 186bcf34-9670-404d-888d-ed4baf3a198c b7f029a35cf95d64967c1f6d4756ac56 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor"} -C3N-02828.MethArray.Red.A C3N-02828 LUAD Methylation_Array tissue_normal CPT0215770006 203561450084_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 a67805e1-e6e9-452d-86cf-115f41c97c67 fc7f314a004a2cada1d264579d51732d {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.MethArray.Red.T C3N-02828 LUAD Methylation_Array tumor CPT0215730006 203273630258_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 d5bb0b3e-f09e-4b1d-b716-de18ca741367 5d6cce75a319e91dcd739e669c18272b {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor"} -C3N-02828.miRNA-Seq.A.hg38 C3N-02828 LUAD miRNA-Seq tissue_normal CPT0215770009 5c785f87-f11e-4bc7-85eb-119d418676fc_mirnaseq_gdc_realn.bam 300370427 BAM harmonized CPTAC3 fc09b733-222a-411d-b1c1-15c7119e2b6a 6078b4064e82ef48db9ef8b091fc8a7e {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.miRNA-Seq.S150_L007_R1.T C3N-02828 LUAD miRNA-Seq tumor CPT0215730009 190828_UNC32-K00270_0200_BH7GVJBBXY_CAAAAG_S150_L007_R1_001.unaln.bam 183391279 BAM S150_L007_R1 unaligned CPTAC3 0de1e184-2af4-47e1-8a91-3c708272ac1d fac8a3c035c703f6af26c3cfdead450e {"aliquot_tag": "ALQ_8bdaaabe", "sample": "S150", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02828.miRNA-Seq.S40_L006_R1.A C3N-02828 LUAD miRNA-Seq tissue_normal CPT0215770009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGGCA_S40_L006_R1_001.unaln.bam 263463523 BAM S40_L006_R1 unaligned CPTAC3 0014e06b-fade-4b7c-8e24-804e3529f90a 605535842e7438a87cc2ec55e21b6f6a {"aliquot_tag": "ALQ_7e5a0c7e", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.miRNA-Seq.T.hg38 C3N-02828 LUAD miRNA-Seq tumor CPT0215730009 f66892ec-c9bc-4e3d-baf2-ebfc8badf25c_mirnaseq_gdc_realn.bam 199442597 BAM harmonized CPTAC3 8be6e13e-49d1-4441-8c6e-d0c58c41585e a6527b1929a699dd67207a9c7753e663 {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor"} -C3N-02828.RNA-Seq.chimeric.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.chimeric.gdc_realn.bam 23289245 BAM chimeric harmonized CPTAC3 79e79191-c8b7-4683-a657-e0b4130c86c0 abb8f107f0ffa1a415a7545d579c18cd {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.RNA-Seq.chimeric.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.chimeric.gdc_realn.bam 29880535 BAM chimeric harmonized CPTAC3 69fbeb94-2f69-4b7e-8899-80024a19dd5f ffc383ab682b7137fe3395ad0e818629 {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor"} -C3N-02828.RNA-Seq.genomic.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.genomic.gdc_realn.bam 10141181169 BAM genomic harmonized CPTAC3 38990439-6f45-452e-8f17-661c2b04cfa2 66843c187e1c2bff36b966bb12307e31 {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.RNA-Seq.genomic.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.genomic.gdc_realn.bam 13031503786 BAM genomic harmonized CPTAC3 62f344c7-8fff-4d6e-8511-8a0dfe3316e4 8a03f49ebe2d1378acc5cf7143857b2e {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor"} -C3N-02828.RNA-Seq.S29_L008_R1.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R1_001.fastq.gz 3160603343 FASTQ S29_L008_R1 unaligned CPTAC3 c63f259a-3fa4-4c94-b105-6ccbe98f5d94 b3c6dd0140757bc8b48fbfce3625cab5 {"aliquot_tag": "ALQ_7e5a0c7e", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.RNA-Seq.S29_L008_R2.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R2_001.fastq.gz 3441286145 FASTQ S29_L008_R2 unaligned CPTAC3 8a40eb23-2d96-4857-9c58-0dc12467175a ae64ea748312eddbbae46d9e8e9218f9 {"aliquot_tag": "ALQ_7e5a0c7e", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.RNA-Seq.S32_L008_R1.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R1_001.fastq.gz 4182911729 FASTQ S32_L008_R1 unaligned CPTAC3 42a981c7-80d4-446f-9577-60d6271eaa14 26414472431865e40856816773ba8420 {"aliquot_tag": "ALQ_8bdaaabe", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02828.RNA-Seq.S32_L008_R2.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R2_001.fastq.gz 4723422530 FASTQ S32_L008_R2 unaligned CPTAC3 43cca998-14a8-4d36-991d-7fa57b7f822f e69af08d06d22b4d39bdf5330f37c79a {"aliquot_tag": "ALQ_8bdaaabe", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02828.RNA-Seq.transcriptome.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.transcriptome.gdc_realn.bam 6390313424 BAM transcriptome harmonized CPTAC3 2206c3ca-7963-424e-9cbe-9ad7028de41c 73a1b5cad0951ade51c0a9b07edb458a {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.RNA-Seq.transcriptome.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.transcriptome.gdc_realn.bam 10659526208 BAM transcriptome harmonized CPTAC3 0d796210-1a2d-4b73-828b-4fd097ec2b7d cd99095912094e883ab8b2f83d3cdadd {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor"} -C3N-02828.WGS.N C3N-02828 LUAD WGS blood_normal CPT0215850002 CPT0215850002.WholeGenome.RP-1303.bam 62459536553 BAM aligned CPTAC3 8f3c8bbd-9a69-4633-9d07-86f628fa0593 575fdb042460192918d466103cda93cb {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal"} -C3N-02828.WGS.N.hg38 C3N-02828 LUAD WGS blood_normal CPT0215850002 6bf07321-701f-41d6-b0da-7d4e4463dd3c_wgs_gdc_realn.bam 91105046734 BAM harmonized CPTAC3 32f69432-cde6-41b3-91d2-3b66eeb81811 44b97b836fe813dff115ca341ea7dfb5 {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal"} -C3N-02828.WGS.T C3N-02828 LUAD WGS tumor CPT0215730006 CPT0215730006.WholeGenome.RP-1303.bam 57203844208 BAM aligned CPTAC3 b7b7c9b3-7e90-45ba-92a3-83c58a9a4bbc af4af440333876d84da6521aeb809303 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor"} -C3N-02828.WGS.T.hg38 C3N-02828 LUAD WGS tumor CPT0215730006 3f47ae85-5796-4681-8441-49ae30c3b28e_wgs_gdc_realn.bam 84667981053 BAM harmonized CPTAC3 243c8eb3-6090-48ee-bdb6-35fc6fc95886 1fa30a37283c244de00a3d0d55d5e8f4 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor"} -C3N-02828.WXS.A C3N-02828 LUAD WXS tissue_normal CPT0215770006 CPT0215770006.WholeExome.RP-1303.bam 20546258894 BAM aligned CPTAC3 b5880edb-e599-4acf-8569-02e88cbd0e4a 2a05dc12aed03a5cf340540d2499dba9 {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.WXS.A.hg38 C3N-02828 LUAD WXS tissue_normal CPT0215770006 21ca064b-359b-4bf4-8319-6fa64d573774_wxs_gdc_realn.bam 28494143477 BAM harmonized CPTAC3 c8ebaf66-27ba-46f2-b807-83b319906b10 39e5ead2d2735ec6823797ef74bdf68b {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02828.WXS.N C3N-02828 LUAD WXS blood_normal CPT0215850002 CPT0215850002.WholeExome.RP-1303.bam 31884960226 BAM aligned CPTAC3 3a3cb431-382e-42f0-aebb-b86fc9843583 2f0652dab51b88371e3dfb507059d9d3 {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal"} -C3N-02828.WXS.N.hg38 C3N-02828 LUAD WXS blood_normal CPT0215850002 6bf07321-701f-41d6-b0da-7d4e4463dd3c_wxs_gdc_realn.bam 44248904736 BAM harmonized CPTAC3 f257f0af-dc46-4fec-9b7d-5ffc3cdc02d6 600dbfcd1db185f3600d56be9660a03e {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal"} -C3N-02828.WXS.T C3N-02828 LUAD WXS tumor CPT0215730006 CPT0215730006.WholeExome.RP-1303.bam 28039009073 BAM aligned CPTAC3 09fd9dde-972c-4d0e-a7fd-422c7cf1c686 02d3623ec4a9bef0a94636cd3680890f {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor"} -C3N-02828.WXS.T.hg38 C3N-02828 LUAD WXS tumor CPT0215730006 3f47ae85-5796-4681-8441-49ae30c3b28e_wxs_gdc_realn.bam 38965037538 BAM harmonized CPTAC3 4655ed3d-5da9-49f4-ba20-b47109cd8d10 ee6dd0a7c241bafe0553320239ff4f00 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor"} -C3N-02916.MethArray.Green.A C3N-02916 LUAD Methylation_Array tissue_normal CPT0215950006 203561620052_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a74045f0-e061-425c-ae03-766ac9713f4d 63204a0ffadd3b4b4f3b6fd0cf8dc37e {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.MethArray.Green.T C3N-02916 LUAD Methylation_Array tumor CPT0215930006 203561450106_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6ba0f547-2989-4126-b98f-8128d359380f d9d389e1820ce5bf8355d10bc407faa0 {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor"} -C3N-02916.MethArray.Red.A C3N-02916 LUAD Methylation_Array tissue_normal CPT0215950006 203561620052_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 d3c46cd6-f601-49a7-b147-c9d5af4f4899 a7e88874977a5c8e076e07fec4443a0c {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.MethArray.Red.T C3N-02916 LUAD Methylation_Array tumor CPT0215930006 203561450106_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5fad2663-12b6-4249-a1ee-2888706c5cc6 ad2f2448a2e53918e42b33f78c34c3ee {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor"} -C3N-02916.miRNA-Seq.A.hg38 C3N-02916 LUAD miRNA-Seq tissue_normal CPT0215950009 7041d936-d106-4263-86f5-fbda25a2addf_mirnaseq_gdc_realn.bam 229484080 BAM harmonized CPTAC3 02147db4-fbd8-4ef9-84f3-a9c2ea26839a b9ce874dca05d186809bf8ff6007df95 {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.miRNA-Seq.S24_L004_R1.T C3N-02916 LUAD miRNA-Seq tumor CPT0215930009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAACTA_S24_L004_R1_001.unaln.bam 224456500 BAM S24_L004_R1 unaligned CPTAC3 22fd9325-ce9f-4148-83de-6cabee685507 2fc4c13060d7d92352024db368b19a59 {"aliquot_tag": "ALQ_b1d0cbce", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02916.miRNA-Seq.S41_L007_R1.A C3N-02916 LUAD miRNA-Seq tissue_normal CPT0215950009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTCCGC_S41_L007_R1_001.unaln.bam 197297649 BAM S41_L007_R1 unaligned CPTAC3 80f7bab0-40ae-41ee-a526-284ce2ab1946 9cd7e807f4f2a8a9a6375a1bb359fbb8 {"aliquot_tag": "ALQ_3e903e6e", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.miRNA-Seq.T.hg38 C3N-02916 LUAD miRNA-Seq tumor CPT0215930009 53819102-5f48-441b-b214-c7ec83d44fd9_mirnaseq_gdc_realn.bam 251821548 BAM harmonized CPTAC3 d26fea1d-5376-49bb-af5d-bcbfc0298131 25350a14a3dbeeef06ebd49eb3a78db6 {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor"} -C3N-02916.RNA-Seq.chimeric.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.chimeric.gdc_realn.bam 33886586 BAM chimeric harmonized CPTAC3 83afeeaa-3c01-46b7-a71f-1bf5cccc04b5 786b9faff7bad4908cd1c2ae1ae73ed6 {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.RNA-Seq.chimeric.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.chimeric.gdc_realn.bam 37018701 BAM chimeric harmonized CPTAC3 a5cbfa61-9585-441d-996e-48246ae2a2d9 dc73686c9a8b00e33a025adedffb8e68 {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor"} -C3N-02916.RNA-Seq.genomic.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.genomic.gdc_realn.bam 7008480874 BAM genomic harmonized CPTAC3 4afec2f0-3e6a-4bc8-ac42-7f0e2b72775d 21dec993f1de1f4943e9fa5ae179b03e {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.RNA-Seq.genomic.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.genomic.gdc_realn.bam 12473098556 BAM genomic harmonized CPTAC3 b5ecb523-b21c-4233-a52b-fc09a13b916b 8e1ad7e406a335d96cc751a6b25be4aa {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor"} -C3N-02916.RNA-Seq.S25_L007_R1.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R1_001.fastq.gz 4249643387 FASTQ S25_L007_R1 unaligned CPTAC3 a2a8ca66-70e4-4650-a1ad-9671fcb029a6 612ed46e2e74dbed55073dcdcf194577 {"aliquot_tag": "ALQ_b1d0cbce", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02916.RNA-Seq.S25_L007_R2.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R2_001.fastq.gz 4713666263 FASTQ S25_L007_R2 unaligned CPTAC3 ad61b750-3b70-4238-82b3-d3d7a1f1edaa f92bba2bd0f496611935dfe3f3d059e0 {"aliquot_tag": "ALQ_b1d0cbce", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02916.RNA-Seq.S8_L002_R1.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R1_001.fastq.gz 2823535156 FASTQ S8_L002_R1 unaligned CPTAC3 62e5b863-96e9-4cee-885d-62847c273d7a e5dbdb097f0d68bbb3bf57c5ec42a763 {"aliquot_tag": "ALQ_3e903e6e", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.RNA-Seq.S8_L002_R2.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R2_001.fastq.gz 3355523451 FASTQ S8_L002_R2 unaligned CPTAC3 122fc75e-1587-4cc9-9b32-179cdf23d699 fb5a07b5d813c80d0eb2eddf3d830523 {"aliquot_tag": "ALQ_3e903e6e", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.RNA-Seq.transcriptome.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.transcriptome.gdc_realn.bam 6434138771 BAM transcriptome harmonized CPTAC3 a9f57008-cbb4-4deb-bd4e-c1189d5d6b3e 87363621dc22fd77461145e7286fec02 {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.RNA-Seq.transcriptome.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.transcriptome.gdc_realn.bam 9796922354 BAM transcriptome harmonized CPTAC3 05a90a44-f028-4219-9241-498c9045004f 944d303fd153ed2a0ec5f731e9f9f2c1 {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor"} -C3N-02916.WGS.N C3N-02916 LUAD WGS blood_normal CPT0216030002 CPT0216030002.WholeGenome.RP-1303.bam 66651850484 BAM aligned CPTAC3 636e364b-d40c-427b-b620-0e783b089d6e 62e9e6dc45b1b1394a7e286564ac9770 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal"} -C3N-02916.WGS.N.hg38 C3N-02916 LUAD WGS blood_normal CPT0216030002 ad53e3c8-12dd-45ed-80c5-43c6ec9efa20_wgs_gdc_realn.bam 96625085436 BAM harmonized CPTAC3 ff85602f-9761-48a1-836b-21a28938b9c6 d5cbac8b20eff6c1f7055499f8324712 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal"} -C3N-02916.WGS.T C3N-02916 LUAD WGS tumor CPT0215930006 CPT0215930006.WholeGenome.RP-1303.bam 56765471490 BAM aligned CPTAC3 0fc87cf6-1d09-40e0-9ef1-4324104d7ec5 8c12574aa207be79e0fa2eee8df22b13 {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor"} -C3N-02916.WGS.T.hg38 C3N-02916 LUAD WGS tumor CPT0215930006 0ecdcf72-7578-4171-8e68-b86c57961d3f_wgs_gdc_realn.bam 83310289814 BAM harmonized CPTAC3 141ad1a7-a5e5-4a3f-b064-9ef509647dda a81ab72049d9c1314ab1a2abfe1d474f {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor"} -C3N-02916.WXS.A C3N-02916 LUAD WXS tissue_normal CPT0215950006 CPT0215950006.WholeExome.RP-1303.bam 21220762029 BAM aligned CPTAC3 150e9d0b-2e00-4391-8285-e7052071ff10 ffa6afb1f1aafd240e81ef563f1a966a {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.WXS.A.hg38 C3N-02916 LUAD WXS tissue_normal CPT0215950006 22f8a773-1d72-4ef0-a15c-7f9296935b4e_wxs_gdc_realn.bam 29318177996 BAM harmonized CPTAC3 dfda3bf6-c831-40fe-a671-764e45d65956 45f04f504c41112dfb4c8b914f1a391d {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02916.WXS.N C3N-02916 LUAD WXS blood_normal CPT0216030002 CPT0216030002.WholeExome.RP-1303.bam 22491040475 BAM aligned CPTAC3 1d1bed6c-3d74-49f4-8cc8-c44fdb0e0db9 49a324b1b63a5348610ef33068f3d401 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal"} -C3N-02916.WXS.N.hg38 C3N-02916 LUAD WXS blood_normal CPT0216030002 ad53e3c8-12dd-45ed-80c5-43c6ec9efa20_wxs_gdc_realn.bam 31121905997 BAM harmonized CPTAC3 75bdeefd-94e5-448f-81f8-53425d99b910 26d4997e68690f96afb2e43abb062c39 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal"} -C3N-02916.WXS.T C3N-02916 LUAD WXS tumor CPT0215930006 CPT0215930006.WholeExome.RP-1303.bam 25745991484 BAM aligned CPTAC3 5dbe607c-b943-492a-a753-7db40c342d1a 363cdd17992296443203931045a0045c {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor"} -C3N-02916.WXS.T.hg38 C3N-02916 LUAD WXS tumor CPT0215930006 0ecdcf72-7578-4171-8e68-b86c57961d3f_wxs_gdc_realn.bam 36046734710 BAM harmonized CPTAC3 aa25005a-8558-4fdf-ba29-1083149aecbd 47fbd4795682cd3363f48b545bd17f45 {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor"} -C3N-02919.MethArray.Green.A C3N-02919 LUAD Methylation_Array tissue_normal CPT0216130007 203561450106_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 aabfca07-cfe5-42ce-853e-4be091ed9cf9 bf1263b7d784997bdb0a479ba8abec64 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.MethArray.Green.T C3N-02919 LUAD Methylation_Array tumor CPT0216100007 203561450025_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 e8b52357-47e9-495c-b690-404458021d4d a438f3e24a1493d407afd2f59a92dacc {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor"} -C3N-02919.MethArray.Red.A C3N-02919 LUAD Methylation_Array tissue_normal CPT0216130007 203561450106_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 eef9a70b-64a0-4783-b097-ff6496f11de3 9720300e3872ee1f9bc81a4bd2665002 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.MethArray.Red.T C3N-02919 LUAD Methylation_Array tumor CPT0216100007 203561450025_R05C01_Red.idat 13676222 IDAT Red NA CPTAC3 9f28f05c-7a09-4850-bf91-090be6efe55f 62630888860459148ea0677aa795bfbb {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor"} -C3N-02919.miRNA-Seq.A.hg38 C3N-02919 LUAD miRNA-Seq tissue_normal CPT0216130010 5e88d29b-5d45-4d81-b7fd-b53f212c5529_mirnaseq_gdc_realn.bam 234663566 BAM harmonized CPTAC3 c324d625-9b34-4fdb-a970-9fdbc5eab355 03baa8a9251f24ec5d90686806342cd7 {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.miRNA-Seq.S34_L005_R1.T C3N-02919 LUAD miRNA-Seq tumor CPT0216100010 190712_UNC32-K00270_0192_BH7HL3BBXY_GGCTAC_S34_L005_R1_001.unaln.bam 163416097 BAM S34_L005_R1 unaligned CPTAC3 87b63c8e-266c-406e-a2fc-4c5e6bd68df3 682d1ab8f215241ab57b4a8ad5a95a16 {"aliquot_tag": "ALQ_4b0ca00b", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02919.miRNA-Seq.S35_L005_R1.A C3N-02919 LUAD miRNA-Seq tissue_normal CPT0216130010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTTGTA_S35_L005_R1_001.unaln.bam 205950529 BAM S35_L005_R1 unaligned CPTAC3 c2f22b30-ee34-4401-920a-d0a1373bc587 35e0fec776ad9d7383b525b5cc10619e {"aliquot_tag": "ALQ_cacdadb", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.miRNA-Seq.T.hg38 C3N-02919 LUAD miRNA-Seq tumor CPT0216100010 cca011bd-9171-42bf-8903-c0c1beae8e89_mirnaseq_gdc_realn.bam 181998867 BAM harmonized CPTAC3 ca43d960-67e1-42ea-8136-9fc9289fa3cd a9445eb1f03db6d16de27d0fc7df5a40 {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor"} -C3N-02919.RNA-Seq.chimeric.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.chimeric.gdc_realn.bam 43871233 BAM chimeric harmonized CPTAC3 514f9fe6-9e3f-45cc-9316-db40c70f773e 1ebbca7403a8762e64f6130f1ae0bfe8 {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.RNA-Seq.chimeric.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.chimeric.gdc_realn.bam 28237731 BAM chimeric harmonized CPTAC3 4ab08eec-79fb-4723-b5c9-cd778b74c8e7 9874a9a22e4895c2370801ff82323bee {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor"} -C3N-02919.RNA-Seq.genomic.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.genomic.gdc_realn.bam 9781059279 BAM genomic harmonized CPTAC3 0006f87b-aa44-4ba7-a6e3-2e3be4474700 9e3b4750e0fda3bd1d5ab0bc7ecfe2f1 {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.RNA-Seq.genomic.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.genomic.gdc_realn.bam 7039798745 BAM genomic harmonized CPTAC3 3ba893e9-7cd4-4151-996d-957a2f1de3ba 0e69a5cfae949f76c3a4ccfe9bda03c5 {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor"} -C3N-02919.RNA-Seq.S23_L006_R1.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R1_001.fastq.gz 4836850627 FASTQ S23_L006_R1 unaligned CPTAC3 035d916b-9f18-4500-8476-23c62a245c0e 3fadf4a6a2ffb8745b2b5bd1d43c025a {"aliquot_tag": "ALQ_cacdadb", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.RNA-Seq.S23_L006_R2.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R2_001.fastq.gz 5163596208 FASTQ S23_L006_R2 unaligned CPTAC3 806d7768-6d24-4976-a789-8be6df07fdba 2baf2346cf45964d0ae18d0a4d880fb2 {"aliquot_tag": "ALQ_cacdadb", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.RNA-Seq.S32_L008_R1.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R1_001.fastq.gz 3009547640 FASTQ S32_L008_R1 unaligned CPTAC3 dd6883bd-1c4e-4463-a454-1fae413f67ff ffea8d99cd53bb2e41659ff4795913b8 {"aliquot_tag": "ALQ_4b0ca00b", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02919.RNA-Seq.S32_L008_R2.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R2_001.fastq.gz 3462130922 FASTQ S32_L008_R2 unaligned CPTAC3 d1d44d98-a7a7-45b4-8287-22fc1b7b8c0f c049edc19d6c57e01c0bbdda519de887 {"aliquot_tag": "ALQ_4b0ca00b", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02919.RNA-Seq.transcriptome.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.transcriptome.gdc_realn.bam 11315553210 BAM transcriptome harmonized CPTAC3 990fbd0b-d08d-4df3-a34e-88a793d353f9 f604e6a8f84d97a9236626fcfa49af6e {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.RNA-Seq.transcriptome.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.transcriptome.gdc_realn.bam 7566725579 BAM transcriptome harmonized CPTAC3 93c302eb-c252-48e1-adae-87b431f9acaf 263847b9d891161dfe8a59ac6b43d94c {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor"} -C3N-02919.WGS.N C3N-02919 LUAD WGS blood_normal CPT0216210002 CPT0216210002.WholeGenome.RP-1303.bam 58373119348 BAM aligned CPTAC3 971c40c8-3bff-4f93-a6fd-cd174153e9c6 595861938303dee14df6fba5136521f6 {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal"} -C3N-02919.WGS.N.hg38 C3N-02919 LUAD WGS blood_normal CPT0216210002 953b0568-9522-498c-aee6-c1fb78164d87_wgs_gdc_realn.bam 84908614613 BAM harmonized CPTAC3 40c324e5-419d-4c42-be84-6a2a4009bebc 9881465e0b2a59c730d340a512f949f5 {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal"} -C3N-02919.WGS.T C3N-02919 LUAD WGS tumor CPT0216100007 CPT0216100007.WholeGenome.RP-1303.bam 69478095156 BAM aligned CPTAC3 eca9774d-5eaa-4c2a-9cc2-95a39e6bbb94 755364999d0f8ef1ef44c9c45e68808d {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor"} -C3N-02919.WGS.T.hg38 C3N-02919 LUAD WGS tumor CPT0216100007 0fd57c95-5356-4783-8036-8d6144d84618_wgs_gdc_realn.bam 101547202254 BAM harmonized CPTAC3 70942b03-9759-4e1e-a9d6-b42a294dc2ec f72d23a6a91f591e22fe1c93d8b47105 {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor"} -C3N-02919.WXS.A C3N-02919 LUAD WXS tissue_normal CPT0216130007 CPT0216130007.WholeExome.RP-1303.bam 35109853070 BAM aligned CPTAC3 ec91eca8-123a-405c-9ba2-fa9a8226c995 8f8f36a170245f0c40d1f3cea8b1df07 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.WXS.A.hg38 C3N-02919 LUAD WXS tissue_normal CPT0216130007 67dc0e59-8778-49c9-9853-e3f794a2829e_wxs_gdc_realn.bam 48596178027 BAM harmonized CPTAC3 e8dc549f-c544-4d8b-9be2-e02981186acc 89d5643a2a21ef321890bf2b3bfbcdb3 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02919.WXS.N C3N-02919 LUAD WXS blood_normal CPT0216210002 CPT0216210002.WholeExome.RP-1303.bam 24504523761 BAM aligned CPTAC3 86e13a81-a0a4-4a2c-af28-ce35db6681dc 8d47aabe0b3d971ff695c08702fee070 {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal"} -C3N-02919.WXS.N.hg38 C3N-02919 LUAD WXS blood_normal CPT0216210002 953b0568-9522-498c-aee6-c1fb78164d87_wxs_gdc_realn.bam 33243504704 BAM harmonized CPTAC3 5fd26427-3b21-40e5-8ac2-fe337256792b 1fb81b48b30c3d48a6df02c3c52d40dc {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal"} -C3N-02919.WXS.T C3N-02919 LUAD WXS tumor CPT0216100007 CPT0216100007.WholeExome.RP-1303.bam 23551340039 BAM aligned CPTAC3 f282b818-d78a-4f42-8efe-e72bb93caeea baabe949f377a56c8936c21468790e12 {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor"} -C3N-02919.WXS.T.hg38 C3N-02919 LUAD WXS tumor CPT0216100007 0fd57c95-5356-4783-8036-8d6144d84618_wxs_gdc_realn.bam 33276826821 BAM harmonized CPTAC3 b7cce6f8-3867-4fe4-9215-24b8d18f35a6 986564d72807ad2178695746c94a80e2 {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor"} -C3N-02920.MethArray.Green.A C3N-02920 LUAD Methylation_Array tissue_normal CPT0216310006 203561620095_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 958c4dc5-5754-40f1-9857-fd2fe33e6f8a 64cc97061e8bd03c632b4d94005b2618 {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.MethArray.Green.T C3N-02920 LUAD Methylation_Array tumor CPT0216290006 203561620077_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 14c47fd7-88eb-4d85-9686-787fd46e16c8 a147cc20077a5ebf0b0bed328b12f3de {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor"} -C3N-02920.MethArray.Red.A C3N-02920 LUAD Methylation_Array tissue_normal CPT0216310006 203561620095_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 e974b734-fc9b-4369-b4f2-0c51a2b41431 277573b9ac20c0b904ccc60afbaccd51 {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.MethArray.Red.T C3N-02920 LUAD Methylation_Array tumor CPT0216290006 203561620077_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 f9523ea1-9e16-4a23-9f47-8d79739a4829 0eb952cb73119148a2294c99b2e25426 {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor"} -C3N-02920.miRNA-Seq.A.hg38 C3N-02920 LUAD miRNA-Seq tissue_normal CPT0216310009 4b48994e-1a31-45c2-a2c1-1008190b16ba_mirnaseq_gdc_realn.bam 193145538 BAM harmonized CPTAC3 09996913-c2d5-4e95-8f52-b0ab59088cc4 f7b1fbf8280d76f678f3e0012bccbae0 {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.miRNA-Seq.S38_L007_R1.A C3N-02920 LUAD miRNA-Seq tissue_normal CPT0216310009 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGTCA_S38_L007_R1_001.unaln.bam 166547148 BAM S38_L007_R1 unaligned CPTAC3 554ba187-9525-4e86-a170-928f2d3a84a8 7fe39b769a345f0bc5b7dc666bc6da4d {"aliquot_tag": "ALQ_5b63a155", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.miRNA-Seq.S5_L005_R1.T C3N-02920 LUAD miRNA-Seq tumor CPT0216290009 190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L005_R1_001.unaln.bam 183678300 BAM S5_L005_R1 unaligned CPTAC3 7047d914-598f-4bd5-b821-ebac4e137c83 9664a66c17cd21bd754787a269c62672 {"aliquot_tag": "ALQ_a04f3931", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02920.miRNA-Seq.T.hg38 C3N-02920 LUAD miRNA-Seq tumor CPT0216290009 75a1ee2e-bcb7-4d26-8f5c-8fd50d955835_mirnaseq_gdc_realn.bam 205659615 BAM harmonized CPTAC3 e4505fe3-97b8-4536-9863-2648b01c4f44 5ff27b16f93680641e1ef2175529dc6b {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor"} -C3N-02920.RNA-Seq.chimeric.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.chimeric.gdc_realn.bam 46885061 BAM chimeric harmonized CPTAC3 97838c93-6a84-4907-9cfc-f2ea4be2f8cb 0dace3de87f14b9491bcdfbc6abeaeac {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.RNA-Seq.chimeric.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.chimeric.gdc_realn.bam 33172104 BAM chimeric harmonized CPTAC3 f70eaddb-6fed-4a93-91b1-a44c1a72fc9c 793a97cb289306f2ea824ae504f4b3e2 {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor"} -C3N-02920.RNA-Seq.genomic.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.genomic.gdc_realn.bam 7874690207 BAM genomic harmonized CPTAC3 d14f86d6-64de-4e6b-8a1e-0dd7510e0939 aa9632723ca8b77a4917b7c20155dea2 {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.RNA-Seq.genomic.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.genomic.gdc_realn.bam 11282027719 BAM genomic harmonized CPTAC3 d0fa215a-893f-41af-86e0-740a1c272450 90ef45ac1fe12cc63fd0e8782d1e0815 {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor"} -C3N-02920.RNA-Seq.S14_L004_R1.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R1_001.fastq.gz 3585738159 FASTQ S14_L004_R1 unaligned CPTAC3 8dc939d3-9709-4d6e-9ecc-10f93d866946 0c016ae583be8287664dffa7f07fc391 {"aliquot_tag": "ALQ_5b63a155", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.RNA-Seq.S14_L004_R2.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R2_001.fastq.gz 3641266628 FASTQ S14_L004_R2 unaligned CPTAC3 dc2a0bbd-c9ba-4d4c-af0f-a04c16588529 928f05329f6bc8d61e7638cabfe7f46f {"aliquot_tag": "ALQ_5b63a155", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.RNA-Seq.S15_L004_R1.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R1_001.fastq.gz 4054240221 FASTQ S15_L004_R1 unaligned CPTAC3 7bad4bc6-3826-4337-aaee-7fc7b7bdba87 36d695754f8785d02143bba6f57deb9f {"aliquot_tag": "ALQ_a04f3931", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02920.RNA-Seq.S15_L004_R2.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R2_001.fastq.gz 4580137441 FASTQ S15_L004_R2 unaligned CPTAC3 ee358250-2f35-46d0-adf9-e3b48f1f147a 58b50bffff1ee964bf2c70a7ac4e66a2 {"aliquot_tag": "ALQ_a04f3931", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02920.RNA-Seq.transcriptome.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.transcriptome.gdc_realn.bam 7969053901 BAM transcriptome harmonized CPTAC3 260f4d86-eed8-4ac6-863a-919007694df8 7a1e0e380a3da6aebda8fbd8309df89c {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.RNA-Seq.transcriptome.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.transcriptome.gdc_realn.bam 10019765126 BAM transcriptome harmonized CPTAC3 7cf8f7ce-6ee7-4a26-975a-2a26b4bfb5df 1e31c31df40803f934e3260f7a7f9876 {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor"} -C3N-02920.WGS.N C3N-02920 LUAD WGS blood_normal CPT0216390002 CPT0216390002.WholeGenome.RP-1303.bam 66033213317 BAM aligned CPTAC3 36fdbd6a-5457-40fb-a53e-b5fbd33cca1f a4fa19976db29ff0159e0ebe0c4113fa {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02920.WGS.N.hg38 C3N-02920 LUAD WGS blood_normal CPT0216390002 1b1c55fb-ec4d-425b-8341-4b72b1e6fc81_wgs_gdc_realn.bam 98882106593 BAM harmonized CPTAC3 616e2f18-ef37-446e-874e-340c0ee33e81 9401c1fe66400fa91f6b59eb5744cf8f {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02920.WGS.T C3N-02920 LUAD WGS tumor CPT0216290006 CPT0216290006.WholeGenome.RP-1303.bam 78577604282 BAM aligned CPTAC3 0a444abd-f237-4b70-a512-f025414434f2 41806ac1786ece94f378842eec8fdcc8 {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor"} -C3N-02920.WGS.T.hg38 C3N-02920 LUAD WGS tumor CPT0216290006 2140d4f2-bb01-4866-87ba-66457bd8c891_wgs_gdc_realn.bam 114082348254 BAM harmonized CPTAC3 96562906-63ca-4000-9bb4-74c6f40c630f b8b9a157175ac10acbca7f2b5a25bc6d {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor"} -C3N-02920.WXS.A C3N-02920 LUAD WXS tissue_normal CPT0216310006 CPT0216310006.WholeExome.RP-1303.bam 27882884416 BAM aligned CPTAC3 a645d041-747a-498c-9fda-4de7888a05c1 594a6dd739be5aa306a9b86eeae3cdf5 {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.WXS.A.hg38 C3N-02920 LUAD WXS tissue_normal CPT0216310006 0bd8e977-3aa9-4ca4-9994-81fce757a8b5_wxs_gdc_realn.bam 38630777649 BAM harmonized CPTAC3 f0ba825e-f479-473d-8218-000503928adb 0a10d59a73e757a38c9800995f8d3a8e {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02920.WXS.N C3N-02920 LUAD WXS blood_normal CPT0216390002 CPT0216390002.WholeExome.RP-1303.bam 22277510953 BAM aligned CPTAC3 7dfd87a3-ad2f-48ff-89b8-a3da335fadb8 8d01855afb0f7ddf5a4d045160eb574f {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02920.WXS.N.hg38 C3N-02920 LUAD WXS blood_normal CPT0216390002 1b1c55fb-ec4d-425b-8341-4b72b1e6fc81_wxs_gdc_realn.bam 30615397018 BAM harmonized CPTAC3 edfc0c96-97e4-43b1-8f22-b9bf45ca2398 cb64e11c07b4a25e8312f8ea7ff3c72a {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02920.WXS.T C3N-02920 LUAD WXS tumor CPT0216290006 CPT0216290006.WholeExome.RP-1303.bam 21184060527 BAM aligned CPTAC3 3535e562-12f2-423f-a1a7-300d0c7207df 9372492dbb6c9f8cda5a45dc7900ef7a {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor"} -C3N-02920.WXS.T.hg38 C3N-02920 LUAD WXS tumor CPT0216290006 2140d4f2-bb01-4866-87ba-66457bd8c891_wxs_gdc_realn.bam 29318445351 BAM harmonized CPTAC3 047b50be-b144-4c7b-ab96-d74e57beffcb b66f591115f16e731b7a7f0e1384dfae {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor"} -C3N-02922.MethArray.Green.A C3N-02922 LUAD Methylation_Array tissue_normal CPT0216490006 203561450114_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ebc33038-6a24-40b6-9d3a-33137fbd6246 cbcbdee6419697226aeee5e4709e6e13 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.MethArray.Green.T C3N-02922 LUAD Methylation_Array tumor CPT0216480006 203561450103_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8d1a271c-938b-4082-b904-8ca9c9678319 c3f16f4a038bbd9bca19e9e74f084232 {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor"} -C3N-02922.MethArray.Red.A C3N-02922 LUAD Methylation_Array tissue_normal CPT0216490006 203561450114_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 50b04752-8b65-4e50-b483-aa053de5fa36 f1e2ddf801e23d838465343468e728c0 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.MethArray.Red.T C3N-02922 LUAD Methylation_Array tumor CPT0216480006 203561450103_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 43115ba7-1364-43a6-93cb-fc903fabdf1b a87cd806573b0258fe4397fb6261a18f {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor"} -C3N-02922.miRNA-Seq.A.hg38 C3N-02922 LUAD miRNA-Seq tissue_normal CPT0216490009 17e66ba4-b244-4a0d-ac2c-873cf45e9d66_mirnaseq_gdc_realn.bam 261450137 BAM harmonized CPTAC3 ba5bd037-790b-415a-b83c-e88303f4c56e ff5977c81ab4489afbab368bac8c5bad {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.miRNA-Seq.S23_L004_R1.T C3N-02922 LUAD miRNA-Seq tumor CPT0216480009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATTCCT_S23_L004_R1_001.unaln.bam 146576186 BAM S23_L004_R1 unaligned CPTAC3 715df405-4404-43f5-92eb-7e9cbac8ef99 11b099f35918b9d96ce2a6b0488223b6 {"aliquot_tag": "ALQ_4b76f39c", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02922.miRNA-Seq.S39_L007_R1.A C3N-02922 LUAD miRNA-Seq tissue_normal CPT0216490009 190712_UNC32-K00270_0192_BH7HL3BBXY_CCGTCC_S39_L007_R1_001.unaln.bam 229516180 BAM S39_L007_R1 unaligned CPTAC3 ab238937-ef18-4ff9-b11f-201a6a976422 bcc2e11da64465a7ebd858e652204a04 {"aliquot_tag": "ALQ_7616da2c", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.miRNA-Seq.T.hg38 C3N-02922 LUAD miRNA-Seq tumor CPT0216480009 5927fa2e-1461-4f06-beba-146749bd039c_mirnaseq_gdc_realn.bam 162062195 BAM harmonized CPTAC3 50df6007-dec6-4ce9-ac24-c16c19d1bd5a a9bd54bf2abfd156571f92da1fd21116 {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor"} -C3N-02922.RNA-Seq.chimeric.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.chimeric.gdc_realn.bam 41548503 BAM chimeric harmonized CPTAC3 b003629f-dcdb-4489-bc66-f8f624e004b8 1e34230d846f67fe8c754ec12b45bb6c {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.RNA-Seq.chimeric.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.chimeric.gdc_realn.bam 34819600 BAM chimeric harmonized CPTAC3 d0a10f1a-8759-41ba-8101-0e01312b9d5d b8f2b834b72efaf92339551503fa52b8 {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor"} -C3N-02922.RNA-Seq.genomic.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.genomic.gdc_realn.bam 6928771810 BAM genomic harmonized CPTAC3 68018dbf-5b4b-49fb-a1b5-decb87e586a6 950652612c9129e4e4e7e31250dbb228 {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.RNA-Seq.genomic.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.genomic.gdc_realn.bam 13615418189 BAM genomic harmonized CPTAC3 a7c117d1-61f1-4b0e-a5d3-d2b1f712b694 c3bd44d6ac44f3188389c5edaa3cc89f {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor"} -C3N-02922.RNA-Seq.S13_L004_R1.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R1_001.fastq.gz 2974470329 FASTQ S13_L004_R1 unaligned CPTAC3 38ff721c-4f93-4a74-bfa7-35315250e9c8 1a026c930f8e04153333565f7e601cda {"aliquot_tag": "ALQ_7616da2c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.RNA-Seq.S13_L004_R2.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R2_001.fastq.gz 3139821052 FASTQ S13_L004_R2 unaligned CPTAC3 b5751eba-377d-4ec1-b82f-3a3d5197ecfb 1ff192fc02c93383ebe923cd9e63b588 {"aliquot_tag": "ALQ_7616da2c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.RNA-Seq.S31_L008_R1.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R1_001.fastq.gz 4303484567 FASTQ S31_L008_R1 unaligned CPTAC3 44aaf0e6-3695-4824-9dc9-bd53de11c1a6 7bb775e83114efbe57eb44eaef634c98 {"aliquot_tag": "ALQ_4b76f39c", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02922.RNA-Seq.S31_L008_R2.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R2_001.fastq.gz 4805757730 FASTQ S31_L008_R2 unaligned CPTAC3 702cdbe5-5824-4df3-b7d6-8f8c6c6b8754 6990ebd55d447761a473f935f0d0eda7 {"aliquot_tag": "ALQ_4b76f39c", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02922.RNA-Seq.transcriptome.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.transcriptome.gdc_realn.bam 7431632511 BAM transcriptome harmonized CPTAC3 685a9b5a-0174-4cb7-bde4-804781c98c16 f369ba3292e55856c1ccd9ed4889de5d {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.RNA-Seq.transcriptome.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.transcriptome.gdc_realn.bam 10040943742 BAM transcriptome harmonized CPTAC3 0c71dd9d-18a6-4a38-90d5-1c08476806c2 f5c6edb17fa3791830fc0ffb582c01b6 {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor"} -C3N-02922.WGS.N C3N-02922 LUAD WGS blood_normal CPT0216570002 CPT0216570002.WholeGenome.RP-1303.bam 57795022503 BAM aligned CPTAC3 0020ffb6-4666-4f9b-b29c-6163048ce2cf 48fe087ae640701cf9bd54cefb7efa11 {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal"} -C3N-02922.WGS.N.hg38 C3N-02922 LUAD WGS blood_normal CPT0216570002 a7a79960-bf5a-40c2-84d3-d35f0ce571fc_wgs_gdc_realn.bam 83399335233 BAM harmonized CPTAC3 2ad679a0-4b26-4a3e-a8a6-fc4a4f031838 ea2ae9f3ddbfb335b14eba39639ffa35 {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal"} -C3N-02922.WGS.T C3N-02922 LUAD WGS tumor CPT0216480006 CPT0216480006.WholeGenome.RP-1303.bam 75494729026 BAM aligned CPTAC3 72b7e617-4ca1-4704-8e0d-49f224421f3e f76b8feb24f05ca900109a0e3f7fcdbf {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor"} -C3N-02922.WGS.T.hg38 C3N-02922 LUAD WGS tumor CPT0216480006 8dbf8701-e91f-4675-8f3f-5f0634577669_wgs_gdc_realn.bam 112628247410 BAM harmonized CPTAC3 b3fc7372-8e78-4af9-8ccc-bb72b7d6398a bc4e7eff2847a88df07adb2a5980229f {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor"} -C3N-02922.WXS.A C3N-02922 LUAD WXS tissue_normal CPT0216490006 CPT0216490006.WholeExome.RP-1303.bam 19542390848 BAM aligned CPTAC3 a244a9ee-126f-41e7-b23f-4158056e404d 7f49f033071ac9f060fd7ff96fb0f6f4 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.WXS.A.hg38 C3N-02922 LUAD WXS tissue_normal CPT0216490006 573c4704-dee9-41ab-87d5-675b848b394e_wxs_gdc_realn.bam 27143856313 BAM harmonized CPTAC3 aebe54f4-1b7b-4cc9-9c5f-45252c3ed52b 617dfbd19923d2cfc4e261a8fa7280c1 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02922.WXS.N C3N-02922 LUAD WXS blood_normal CPT0216570002 CPT0216570002.WholeExome.RP-1303.bam 26866148452 BAM aligned CPTAC3 0e3c0cab-9b7d-416a-a4cb-2e7b695878a6 d22cf2bb75b4e4388a42ede92210a15a {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal"} -C3N-02922.WXS.N.hg38 C3N-02922 LUAD WXS blood_normal CPT0216570002 a7a79960-bf5a-40c2-84d3-d35f0ce571fc_wxs_gdc_realn.bam 37108950264 BAM harmonized CPTAC3 21130862-7d27-4174-9556-648285793d43 c1eaf4965b7bdaf5e894dfb3fc2a14a7 {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal"} -C3N-02922.WXS.T C3N-02922 LUAD WXS tumor CPT0216480006 CPT0216480006.WholeExome.RP-1303.bam 25704004703 BAM aligned CPTAC3 91cbad9c-1df1-4a0d-8fff-50475da413cb 3f6fcd456de59e8b3cf583f01fdf5686 {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor"} -C3N-02922.WXS.T.hg38 C3N-02922 LUAD WXS tumor CPT0216480006 8dbf8701-e91f-4675-8f3f-5f0634577669_wxs_gdc_realn.bam 35976397966 BAM harmonized CPTAC3 ad8b9f75-147a-4fb5-aa68-2847f4a867f5 6253eff2d802cef2043143fb7bbda23d {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor"} -C3N-02923.MethArray.Green.A C3N-02923 LUAD Methylation_Array tissue_normal CPT0216670006 203219650005_R07C01_Grn.idat 13676227 IDAT Green NA CPTAC3 912e24f6-fa0e-4981-926a-2e03e671e894 f9ab575e4b68ba3d10e9be69fbc7622e {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.MethArray.Green.T C3N-02923 LUAD Methylation_Array tumor CPT0216660009 203219760081_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0d940011-e713-480c-87cc-f43c1a4991c8 46e152c1e5d40080af8b8dde62b56f08 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor"} -C3N-02923.MethArray.Red.A C3N-02923 LUAD Methylation_Array tissue_normal CPT0216670006 203219650005_R07C01_Red.idat 13676227 IDAT Red NA CPTAC3 61c246af-46d8-495c-a430-363dff839728 2489914d323fc8049b41cc9a5d2e4ab9 {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.MethArray.Red.T C3N-02923 LUAD Methylation_Array tumor CPT0216660009 203219760081_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 9183df1f-eae5-424d-9f36-cbaa0f2f75d7 6d537fe3a4240ac96ad00f50b88bda18 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor"} -C3N-02923.miRNA-Seq.A.hg38 C3N-02923 LUAD miRNA-Seq tissue_normal CPT0216670009 238ba219-8364-4a63-b75b-ae6f09726a8f_mirnaseq_gdc_realn.bam 250069863 BAM harmonized CPTAC3 c6352f30-e6ce-4c10-be2b-5cacd2d751cc 90ffed9210f39abcdc312057f05b5ff8 {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.miRNA-Seq.S23_L007_R1.T C3N-02923 LUAD miRNA-Seq tumor CPT0216660006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L007_R1_001.unaln.bam 234983930 BAM S23_L007_R1 unaligned CPTAC3 8e92c06f-f45c-4d67-b924-b9849736ab97 4c60abe544b9e188b01defecd08f8ba5 {"aliquot_tag": "ALQ_2931f167", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02923.miRNA-Seq.S5_L006_R1.A C3N-02923 LUAD miRNA-Seq tissue_normal CPT0216670009 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L006_R1_001.unaln.bam 226144047 BAM S5_L006_R1 unaligned CPTAC3 b6455857-9b12-413c-858a-a863c4845f76 a85f38abb713645934d2e6a500707197 {"aliquot_tag": "ALQ_84eec546", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.miRNA-Seq.T.hg38 C3N-02923 LUAD miRNA-Seq tumor CPT0216660006 019f6b45-71cf-42f8-afa8-f59b6752ee3d_mirnaseq_gdc_realn.bam 257172558 BAM harmonized CPTAC3 04fbfc0b-3faa-43bb-9456-7551de3abed8 46a3156fb8249d31f7238e8bea9e427c {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor"} -C3N-02923.RNA-Seq.chimeric.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.chimeric.gdc_realn.bam 44344926 BAM chimeric harmonized CPTAC3 ac0239a5-6b13-4724-a4cd-14a5424e2222 59ee6f1591456333ba8cf55f440e95af {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.RNA-Seq.chimeric.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.chimeric.gdc_realn.bam 47485573 BAM chimeric harmonized CPTAC3 97645f67-4266-44ed-835d-27aa97a78cc7 100536857c450ea3bbe6342c21f66407 {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor"} -C3N-02923.RNA-Seq.genomic.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.genomic.gdc_realn.bam 8872903730 BAM genomic harmonized CPTAC3 366c7d45-4466-4a67-b770-eb9c1dc48e5f ca5a19af6751d410ffb1aa6a026874ea {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.RNA-Seq.genomic.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.genomic.gdc_realn.bam 9544341301 BAM genomic harmonized CPTAC3 928e8c92-4317-4925-b398-ddec6921a0da 6b5b66b46f15ad930cb5bab050ae6a9c {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor"} -C3N-02923.RNA-Seq.S1_L001_R1.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R1_001.fastq.gz 4329208839 FASTQ S1_L001_R1 unaligned CPTAC3 970f6e9d-47b6-4953-88ba-56d087050694 8dcd754eb9a94be25419e858fedf63db {"aliquot_tag": "ALQ_2931f167", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02923.RNA-Seq.S1_L001_R2.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R2_001.fastq.gz 4755262381 FASTQ S1_L001_R2 unaligned CPTAC3 cc2b7783-aedf-4491-a579-b5f92ef1a4cb df95542ffe93f7bf6164d80eb290b562 {"aliquot_tag": "ALQ_2931f167", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02923.RNA-Seq.S21_L006_R1.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R1_001.fastq.gz 4054472385 FASTQ S21_L006_R1 unaligned CPTAC3 d3c73b0a-b8cc-4953-8d69-44c28d72a258 9fa002f68dc07ce2bee32b01b4fd0db2 {"aliquot_tag": "ALQ_84eec546", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.RNA-Seq.S21_L006_R2.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R2_001.fastq.gz 4412620722 FASTQ S21_L006_R2 unaligned CPTAC3 33e35314-ef71-47ec-b22a-4e6c450b5213 1e596d8907cbb45fa68bf378ee120943 {"aliquot_tag": "ALQ_84eec546", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.RNA-Seq.transcriptome.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.transcriptome.gdc_realn.bam 10271320773 BAM transcriptome harmonized CPTAC3 a0b73264-e4bf-4630-a032-9523f1f782d3 5ac5da6a23a72cd979ae3f2e8d79097b {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.RNA-Seq.transcriptome.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.transcriptome.gdc_realn.bam 11740294404 BAM transcriptome harmonized CPTAC3 f0094369-78df-4097-beaf-1559a06e14c9 ecfb001453e619822b9bda4f0c0a7ecc {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor"} -C3N-02923.WGS.N C3N-02923 LUAD WGS blood_normal CPT0216750002 CPT0216750002.WholeGenome.RP-1303.bam 50849014542 BAM aligned CPTAC3 8dafcd88-c395-43ac-bb37-18c5f12cb212 4622bb217417e52446c64add3542fed2 {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02923.WGS.N.hg38 C3N-02923 LUAD WGS blood_normal CPT0216750002 6e9385a2-99c3-4a0a-9d84-90e7a061ab4a_wgs_gdc_realn.bam 74390063218 BAM harmonized CPTAC3 91445358-8eee-4738-9441-64bdebd62c6d 8a898c97bab2137af731354942c4b0ee {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02923.WGS.T C3N-02923 LUAD WGS tumor CPT0216660009 CPT0216660009.WholeGenome.RP-1303.bam 52440615953 BAM aligned CPTAC3 8162b5da-59bf-4fd4-9009-0e81eb36e341 989e7d9e1454f9e6ed5ce89e55d5d7b0 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor"} -C3N-02923.WGS.T.hg38 C3N-02923 LUAD WGS tumor CPT0216660009 60f739cf-8791-4665-b6f7-3d27758deb5f_wgs_gdc_realn.bam 76748473080 BAM harmonized CPTAC3 7a3f0d62-eb78-4c90-9647-b2c053be5501 2d2d70b9ce19a99487394d487e2824aa {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor"} -C3N-02923.WXS.A C3N-02923 LUAD WXS tissue_normal CPT0216670006 CPT0216670006.WholeExome.RP-1303.bam 42218905981 BAM aligned CPTAC3 081c99f0-45ec-4836-a9b1-244f33d923df 44456fd8b2a4148ad7be29734531ed01 {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.WXS.A.hg38 C3N-02923 LUAD WXS tissue_normal CPT0216670006 7596b2ee-0cea-4e07-8b92-699d6eaa123e_wxs_gdc_realn.bam 58397593739 BAM harmonized CPTAC3 2ed17694-e189-4a40-9b8d-0feabcea5c21 bf462086c1fc127857efb21741aaa44c {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02923.WXS.N C3N-02923 LUAD WXS blood_normal CPT0216750002 CPT0216750002.WholeExome.RP-1303.bam 23754842198 BAM aligned CPTAC3 a32b2710-46dd-4adf-826f-a4f42481d8dd 9d7b62c1980a4f94110ead649dcd080c {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02923.WXS.N.hg38 C3N-02923 LUAD WXS blood_normal CPT0216750002 6e9385a2-99c3-4a0a-9d84-90e7a061ab4a_wxs_gdc_realn.bam 32467941212 BAM harmonized CPTAC3 a0c3f073-4879-4d0a-b9a8-97a2ec45043e fab57b0dcadb47be73050c56aa31620a {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-02923.WXS.T C3N-02923 LUAD WXS tumor CPT0216660009 CPT0216660009.WholeExome.RP-1303.bam 22195396697 BAM aligned CPTAC3 6f5bee13-0d72-4067-80df-6499e14a5972 d011ab69bffff4d40ff95917a503ddb0 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor"} -C3N-02923.WXS.T.hg38 C3N-02923 LUAD WXS tumor CPT0216660009 60f739cf-8791-4665-b6f7-3d27758deb5f_wxs_gdc_realn.bam 30510899187 BAM harmonized CPTAC3 b44c2d0f-0350-474b-aa1b-98e10dfeb30d a78d101f7b7caf551342b7ccebd3d256 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor"} -C3N-02925.MethArray.Green.A C3N-02925 HNSCC Methylation_Array tissue_normal CPT0184550006 203219650071_R02C01_Grn.idat 13676210 IDAT Green NA CPTAC3 13283ed7-19c6-4965-aec9-c077ea4dd2a8 e52997d7d542ebb877672fe013fca904 {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.MethArray.Green.T C3N-02925 HNSCC Methylation_Array tumor CPT0184530006 203220070084_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 9fac413d-c7d6-42ef-943f-37b4cdb1fe33 ee79a0cf7b8e8383be2c750435cf5cab {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor"} -C3N-02925.MethArray.Red.A C3N-02925 HNSCC Methylation_Array tissue_normal CPT0184550006 203219650071_R02C01_Red.idat 13676210 IDAT Red NA CPTAC3 52c77164-e9f6-4250-9d44-4c376bb912ca e3f89a2f31a5016def05b431d3c03fbf {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.MethArray.Red.T C3N-02925 HNSCC Methylation_Array tumor CPT0184530006 203220070084_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 e18a41b0-9b03-49f1-983a-55e8f67721af 5faea833a65ccdc14f832f0e11bebb97 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor"} -C3N-02925.miRNA-Seq.A.hg38 C3N-02925 HNSCC miRNA-Seq tissue_normal CPT0184550009 04134394-603e-4772-90e0-19487886d623_mirnaseq_gdc_realn.bam 365897390 BAM harmonized CPTAC3 0b46457f-1b40-4383-8014-b23d5f5e1a51 a99ef7727b60c8255dea0a6f55f62c72 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.miRNA-Seq.S43_L002_R1.T C3N-02925 HNSCC miRNA-Seq tumor CPT0184530009 190228_UNC32-K00270_0151_AHYLY3BBXX_TACAGC_S43_L002_R1_001.unaln.bam 210114050 BAM S43_L002_R1 unaligned CPTAC3 558ff22f-7c3b-4aa9-91db-125b68d43be2 9f3c4eefeab9169547e122790386e7a9 {"aliquot_tag": "ALQ_46a727ef", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02925.miRNA-Seq.S47_L002_R1.A C3N-02925 HNSCC miRNA-Seq tissue_normal CPT0184550009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L002_R1_001.unaln.bam 319319560 BAM S47_L002_R1 unaligned CPTAC3 749ee51b-8eb3-4465-a736-3dd968f7c6a0 5a283cdd4fa315eeb73354ed39763cae {"aliquot_tag": "ALQ_c9e7d24f", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.miRNA-Seq.T.hg38 C3N-02925 HNSCC miRNA-Seq tumor CPT0184530009 c4071d42-0b92-43de-b176-94c5af6d50a7_mirnaseq_gdc_realn.bam 231929760 BAM harmonized CPTAC3 41c3cb4e-193e-4d3d-bdf0-fc4be4f7a09c 7ced2a970f5bedffe36c443ceb19ea91 {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor"} -C3N-02925.RNA-Seq.chimeric.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.chimeric.gdc_realn.bam 133834035 BAM chimeric harmonized CPTAC3 5517f748-3efc-4f34-a8d2-2b39f7b7545d dfb90356c74361c78c88c3eb9c2d08e2 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.RNA-Seq.chimeric.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.chimeric.gdc_realn.bam 110574015 BAM chimeric harmonized CPTAC3 d125dbc9-693c-401e-9ac5-30518915988f 589754d529600504e85fbd5c2fe82219 {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor"} -C3N-02925.RNA-Seq.genomic.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.genomic.gdc_realn.bam 5965734235 BAM genomic harmonized CPTAC3 cd9f73fa-d5db-4481-9068-723b83efa28e f09d8025a54a2b9883cf9a8f6c766241 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.RNA-Seq.genomic.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.genomic.gdc_realn.bam 10790885733 BAM genomic harmonized CPTAC3 f6a4a2c0-ec7e-41f7-81e2-bf078b62e06b 53fa69df79cf600c2ccd85f670bdde34 {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor"} -C3N-02925.RNA-Seq.S10_L008_R1.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R1_001.fastq.gz 2986432905 FASTQ S10_L008_R1 unaligned CPTAC3 915028f8-7517-4923-8996-fff79f9784eb 36e801a34365f051dc59f137e3516471 {"aliquot_tag": "ALQ_c9e7d24f", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.RNA-Seq.S10_L008_R2.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R2_001.fastq.gz 3203480807 FASTQ S10_L008_R2 unaligned CPTAC3 a8c2e00a-5ec4-4508-bc41-f40225e52b81 7cd2cb4e1f60ae98464073b0a33eff71 {"aliquot_tag": "ALQ_c9e7d24f", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.RNA-Seq.S21_L004_R1.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R1_001.fastq.gz 4902909161 FASTQ S21_L004_R1 unaligned CPTAC3 6e684ad0-928d-4101-ba28-8e18341d9695 114dd188e3a8c340f70051b045743726 {"aliquot_tag": "ALQ_46a727ef", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02925.RNA-Seq.S21_L004_R2.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R2_001.fastq.gz 5455863898 FASTQ S21_L004_R2 unaligned CPTAC3 c9ce9ba8-601f-4b60-bdc3-385c94c73b15 0559fd045a3bb14ba809285fe56d8a6a {"aliquot_tag": "ALQ_46a727ef", "sample": "S21", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02925.RNA-Seq.transcriptome.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.transcriptome.gdc_realn.bam 10679455563 BAM transcriptome harmonized CPTAC3 0f9b8d8c-13bf-4b9f-adbf-35a22bada350 7eb2bce67957dc4f293d4fea3c3be595 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.RNA-Seq.transcriptome.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.transcriptome.gdc_realn.bam 13892365361 BAM transcriptome harmonized CPTAC3 594e6044-e079-479a-9b29-ba8393d2dca8 933d32e55d51e5cbff8af0cb8bfed69c {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor"} -C3N-02925.WGS.N C3N-02925 HNSCC WGS blood_normal CPT0184590002 CPT0184590002.WholeGenome.RP-1303.bam 98581209706 BAM aligned CPTAC3 bdebee52-610e-4b84-b43d-90e1e28b00f0 abaa813966349f02a56b5ea55afcc8ca {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02925.WGS.N.hg38 C3N-02925 HNSCC WGS blood_normal CPT0184590002 fb9ebe30-a94e-470e-98d3-cdfb882d98bf_wgs_gdc_realn.bam 161363574051 BAM harmonized CPTAC3 d107dfb0-a038-44f1-ac65-b3d844762778 703dd92e98fe616279b858a8df456465 {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02925.WGS.T C3N-02925 HNSCC WGS tumor CPT0184530006 CPT0184530006.WholeGenome.RP-1303.bam 66963526409 BAM aligned CPTAC3 1c73c245-2a82-497e-82d7-1db6ecaf8a64 01a8ce5f1654e3993df5928cc198aede {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor"} -C3N-02925.WGS.T.hg38 C3N-02925 HNSCC WGS tumor CPT0184530006 e6a975f9-9b1d-4714-840e-d4d664e878e0_wgs_gdc_realn.bam 95095125893 BAM harmonized CPTAC3 5ebeca67-9355-4e00-976e-335f9bcede34 7dff51083701e91c570cb89700341014 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor"} -C3N-02925.WXS.A C3N-02925 HNSCC WXS tissue_normal CPT0184550006 CPT0184550006.WholeExome.RP-1303.bam 29071896393 BAM aligned CPTAC3 02c4e26b-7ebe-4130-86ef-85969597ca80 dcaf22bc038aee1c5b801c1ec5dfaa24 {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.WXS.A.hg38 C3N-02925 HNSCC WXS tissue_normal CPT0184550006 a7915475-4b25-4421-b0a8-18bfbd0a7be0_wxs_gdc_realn.bam 39720988677 BAM harmonized CPTAC3 0fabe8a0-3d2c-43f8-8a96-23a3f2b4d8c0 eefb4e20ebf9c2c16d44ccdd3a2e8ab2 {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02925.WXS.N C3N-02925 HNSCC WXS blood_normal CPT0184590002 CPT0184590002.WholeExome.RP-1303.bam 29077345508 BAM aligned CPTAC3 b3a99c33-4b55-43d3-acc0-8b31bf56496a fefcafe14964f94a89fcff736c206107 {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02925.WXS.N.hg38 C3N-02925 HNSCC WXS blood_normal CPT0184590002 fb9ebe30-a94e-470e-98d3-cdfb882d98bf_wxs_gdc_realn.bam 40040992176 BAM harmonized CPTAC3 62092a85-dd9b-4735-8631-676673426d05 77e545785d844bf048c6131c347f549a {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02925.WXS.T C3N-02925 HNSCC WXS tumor CPT0184530006 CPT0184530006.WholeExome.RP-1303.bam 26914911284 BAM aligned CPTAC3 8502e23c-26bf-4eab-8b7a-a8d6ab5eb6d1 2b92f32a614d510239df169ce5d42824 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor"} -C3N-02925.WXS.T.hg38 C3N-02925 HNSCC WXS tumor CPT0184530006 e6a975f9-9b1d-4714-840e-d4d664e878e0_wxs_gdc_realn.bam 37110672638 BAM harmonized CPTAC3 fc8b175c-fda9-4ab3-b09b-c7ddcb41f0d7 82db431e4648c3c813b723eda8679310 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor"} -C3N-02926.MethArray.Green.A C3N-02926 LUAD Methylation_Array tissue_normal CPT0184620006 203219640157_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0dd03c4e-cee9-462e-a02c-a6b0ef878017 e553ed044b288d2ee35ffb776edf98a9 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.MethArray.Green.T C3N-02926 LUAD Methylation_Array tumor CPT0184600007 203271740156_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a8dee124-99b2-4ab3-ae28-c6e493899e87 4fbad4e1e2682d211133a7988cf38b34 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor"} -C3N-02926.MethArray.Red.A C3N-02926 LUAD Methylation_Array tissue_normal CPT0184620006 203219640157_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 c2387268-5de1-49be-8844-6d377741b4e0 ddb27c4e29e4a51579f46505e9676109 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.MethArray.Red.T C3N-02926 LUAD Methylation_Array tumor CPT0184600007 203271740156_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 a56be0e5-1ed4-4ce2-a296-78f73ba338cc f4cd54e996df4fe9d1fec429854e872e {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor"} -C3N-02926.miRNA-Seq.A.hg38 C3N-02926 LUAD miRNA-Seq tissue_normal CPT0184620009 51ef2de5-c6ae-4554-915b-840dc7897208_mirnaseq_gdc_realn.bam 283841836 BAM harmonized CPTAC3 3395a05c-8a39-4772-84d9-a817ef8177f2 947fcc3c43f2db34d11c275f43b318ed {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.miRNA-Seq.S38_L007_R1.T C3N-02926 LUAD miRNA-Seq tumor CPT0184600010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L007_R1_001.unaln.bam 264232189 BAM S38_L007_R1 unaligned CPTAC3 e95f8467-9e60-4631-bac0-14c379ac827e 6b6d98b8fc65f1e1c465b5b3ee90059e {"aliquot_tag": "ALQ_e754a674", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02926.miRNA-Seq.S8_L008_R1.A C3N-02926 LUAD miRNA-Seq tissue_normal CPT0184620009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L008_R1_001.unaln.bam 260801010 BAM S8_L008_R1 unaligned CPTAC3 a21c1fc0-5ff4-4552-a7c1-dedd5c729548 9dd13473b12ccc5bb6725e5ceb028506 {"aliquot_tag": "ALQ_fd537cf1", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.miRNA-Seq.T.hg38 C3N-02926 LUAD miRNA-Seq tumor CPT0184600010 4cc9550c-bc6b-4f1a-a27a-476305c0cf16_mirnaseq_gdc_realn.bam 285978270 BAM harmonized CPTAC3 642f241b-b45d-46af-b8f7-fed3f7c96936 7f8d2d538593aedabb994a1b85901863 {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor"} -C3N-02926.RNA-Seq.chimeric.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.chimeric.gdc_realn.bam 536912820 BAM chimeric harmonized CPTAC3 cc88caa6-414d-4b5f-a667-7b8470625ee6 3ca618f049da632d56b257cdc33f9cc1 {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.RNA-Seq.chimeric.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.chimeric.gdc_realn.bam 49205626 BAM chimeric harmonized CPTAC3 25231ce7-79ef-4bbb-a307-b260afa8c6c4 5f6a0dd8055476c589d433fedc50da56 {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor"} -C3N-02926.RNA-Seq.genomic.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.genomic.gdc_realn.bam 10420755733 BAM genomic harmonized CPTAC3 a2089caf-485f-4bb0-bbd6-2b84fb084b5f b41e442fbef04b63d42d847c2a89be8b {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.RNA-Seq.genomic.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.genomic.gdc_realn.bam 9005692680 BAM genomic harmonized CPTAC3 bb035ffe-da7d-400f-a5d5-2ecb3d16908b c7e3277e46a994d08f08ade846b37dce {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor"} -C3N-02926.RNA-Seq.S15_L008_R1.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R1_001.fastq.gz 4426188362 FASTQ S15_L008_R1 unaligned CPTAC3 a37360b8-4dc7-47b2-b3e6-586e2c4a63a0 826ad62daad34fc3051489aed7c096e1 {"aliquot_tag": "ALQ_fd537cf1", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.RNA-Seq.S15_L008_R2.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R2_001.fastq.gz 4947590374 FASTQ S15_L008_R2 unaligned CPTAC3 f85992a0-482c-4586-8a0b-2fe413c5a1df 70589b5001ee66a578f4998275537578 {"aliquot_tag": "ALQ_fd537cf1", "sample": "S15", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.RNA-Seq.S9_L003_R1.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R1_001.fastq.gz 4227498254 FASTQ S9_L003_R1 unaligned CPTAC3 8c735238-ff8f-4225-9037-c73c9fede880 f159a0eb7234ccd307cb74a2b1b4047c {"aliquot_tag": "ALQ_e754a674", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02926.RNA-Seq.S9_L003_R2.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R2_001.fastq.gz 4442365729 FASTQ S9_L003_R2 unaligned CPTAC3 8ece369c-6b17-4704-aa75-e5f5414c41c7 cf7324e92d3568b8a615139d30ef747e {"aliquot_tag": "ALQ_e754a674", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02926.RNA-Seq.transcriptome.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.transcriptome.gdc_realn.bam 10433877480 BAM transcriptome harmonized CPTAC3 534fcbf3-03af-4add-a16e-97b7d92c0986 b6bee7f2a287357f5bf0cb625c85f6a0 {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.RNA-Seq.transcriptome.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.transcriptome.gdc_realn.bam 9517594701 BAM transcriptome harmonized CPTAC3 e254d609-160d-4f1e-be0d-e3ec4c756852 4043211c51bda874c08c19d8c54db298 {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor"} -C3N-02926.WGS.N C3N-02926 LUAD WGS blood_normal CPT0184660002 CPT0184660002.WholeGenome.RP-1303.bam 130000214473 BAM aligned CPTAC3 dcde9761-e0c0-4237-bf90-601a8108d48b 50c410337fe25d5ac9c11fad6ac62f6f {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02926.WGS.N.hg38 C3N-02926 LUAD WGS blood_normal CPT0184660002 93551a24-2ecf-45ff-ae4f-f3f79cc7c601_wgs_gdc_realn.bam 188891330736 BAM harmonized CPTAC3 24e2373f-2af0-41a1-a22a-861910f265b6 b77ae51dc9d6f3821c6d38c5ac1495ba {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02926.WGS.T C3N-02926 LUAD WGS tumor CPT0184600007 CPT0184600007.WholeGenome.RP-1303.bam 125404030083 BAM aligned CPTAC3 55af6119-01d9-45c2-aa58-a60e0c473eb9 1cba7df019aee52440de1e651f4b3ef4 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor"} -C3N-02926.WGS.T.hg38 C3N-02926 LUAD WGS tumor CPT0184600007 7720fcab-9129-4782-ae23-99aa02e82c93_wgs_gdc_realn.bam 180852308137 BAM harmonized CPTAC3 bba86495-25f2-45c5-bbea-c0552ba15d00 4a7a3ba050b54b302bb99663c31d3d07 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor"} -C3N-02926.WXS.A C3N-02926 LUAD WXS tissue_normal CPT0184620006 CPT0184620006.WholeExome.RP-1303.bam 27893488282 BAM aligned CPTAC3 2b6399d0-2b05-45de-8c63-69d9421c20ab b604d2aae9f55063eeb96fe8890f2148 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.WXS.A.hg38 C3N-02926 LUAD WXS tissue_normal CPT0184620006 cba249c1-15b6-48e4-be42-334091f47e60_wxs_gdc_realn.bam 38416367277 BAM harmonized CPTAC3 d71e6021-8f20-47f2-b2f4-4eed898a867a 1d6f95f25deaedb199536ed2a84742a4 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02926.WXS.N C3N-02926 LUAD WXS blood_normal CPT0184660002 CPT0184660002.WholeExome.RP-1303.bam 25105661850 BAM aligned CPTAC3 18234507-c347-4d9e-a2d5-21b5516a0312 611c3401c9e8aaa0f5d4635622266ee1 {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02926.WXS.N.hg38 C3N-02926 LUAD WXS blood_normal CPT0184660002 93551a24-2ecf-45ff-ae4f-f3f79cc7c601_wxs_gdc_realn.bam 34869100384 BAM harmonized CPTAC3 7b570ea8-78e7-4282-b970-2dc4af85ef8b 5a58520cbd068de4701d34fc59f05d1a {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02926.WXS.T C3N-02926 LUAD WXS tumor CPT0184600007 CPT0184600007.WholeExome.RP-1303.bam 24312204908 BAM aligned CPTAC3 057d9019-8371-4792-9c7d-2590744153fe e5a464b0ddbb37d5eaf63fbc32cac5fb {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor"} -C3N-02926.WXS.T.hg38 C3N-02926 LUAD WXS tumor CPT0184600007 7720fcab-9129-4782-ae23-99aa02e82c93_wxs_gdc_realn.bam 32962320165 BAM harmonized CPTAC3 02622a2b-d0fa-4356-927a-8f5a939ffae6 8b3bce88cc5816b74c9bbc0873323225 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor"} -C3N-02928.MethArray.Green.A C3N-02928 LUAD Methylation_Array tissue_normal CPT0184690006 203561450017_R07C01_Grn.idat 13676209 IDAT Green NA CPTAC3 4989213c-6e0b-408a-bacb-8463b6507adb 8649aa332486052e3767bade79721978 {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.MethArray.Green.T C3N-02928 LUAD Methylation_Array tumor CPT0184670007 203561450020_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8e13f04d-c6f1-4071-b937-3b24c82e31fd 0b1fa25029f0c49cfc3427a25c07757f {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor"} -C3N-02928.MethArray.Red.A C3N-02928 LUAD Methylation_Array tissue_normal CPT0184690006 203561450017_R07C01_Red.idat 13676209 IDAT Red NA CPTAC3 718150e7-eab7-44c5-805c-601b67bde745 daf062110addf832cddf0b5dda03f4d6 {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.MethArray.Red.T C3N-02928 LUAD Methylation_Array tumor CPT0184670007 203561450020_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 c5689c2e-c7c5-41fd-b884-cdcdf7e36cc3 87dc3f684f220829f9fb63fb521643b6 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor"} -C3N-02928.miRNA-Seq.A.hg38 C3N-02928 LUAD miRNA-Seq tissue_normal CPT0184690009 31f05814-cb07-409a-bfe7-6d15b3cf470d_mirnaseq_gdc_realn.bam 301798891 BAM harmonized CPTAC3 f2caff1f-f3dd-432e-a5e8-627adb5a60b6 56b4f660b0fd91e3f13bfb7eb37fa0ff {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.miRNA-Seq.S18_L005_R1.T C3N-02928 LUAD miRNA-Seq tumor CPT0184670010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGTACG_S18_L005_R1_001.unaln.bam 202775023 BAM S18_L005_R1 unaligned CPTAC3 8e039d9a-5a77-4ad8-86e9-31482ae46eb8 da6e500dd4953e26f2c9484f08121790 {"aliquot_tag": "ALQ_55747a64", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02928.miRNA-Seq.S33_L007_R1.A C3N-02928 LUAD miRNA-Seq tissue_normal CPT0184690009 190712_UNC32-K00270_0192_BH7HL3BBXY_TAGCTT_S33_L007_R1_001.unaln.bam 264918117 BAM S33_L007_R1 unaligned CPTAC3 aea460f0-46d6-4e22-a736-15fe81ab5488 6efe12b06275c66ab36b1383a943352b {"aliquot_tag": "ALQ_8a834de0", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.miRNA-Seq.T.hg38 C3N-02928 LUAD miRNA-Seq tumor CPT0184670010 7c6b4cdb-ee4d-49e1-a071-7159b46216a0_mirnaseq_gdc_realn.bam 225892193 BAM harmonized CPTAC3 cd042563-635d-42f3-8620-ea6c7633570c 09fedf45f038a7ea8ea89ee091a94323 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor"} -C3N-02928.RNA-Seq.chimeric.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.chimeric.gdc_realn.bam 73507639 BAM chimeric harmonized CPTAC3 01803aa6-d2af-468c-b83f-e982e7f6b1f2 9403240607f1b75030d33e58f9de01cc {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.RNA-Seq.chimeric.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.chimeric.gdc_realn.bam 25758965 BAM chimeric harmonized CPTAC3 ea4b99d6-a134-48b4-8974-d2780151acc2 838b9675edad59d45c90dd03ecd12328 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor"} -C3N-02928.RNA-Seq.genomic.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.genomic.gdc_realn.bam 9084520765 BAM genomic harmonized CPTAC3 0bad852e-afb0-4325-bd1d-8195ee856e14 65c9ca0dafd4a39f63f3f43fc668b37e {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.RNA-Seq.genomic.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.genomic.gdc_realn.bam 10645104083 BAM genomic harmonized CPTAC3 eef71d19-ab5c-44af-bec5-57284de2fa29 47da89a07609d21939ba7d055c82d8c7 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor"} -C3N-02928.RNA-Seq.S2_L001_R1.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R1_001.fastq.gz 3232064640 FASTQ S2_L001_R1 unaligned CPTAC3 4c972fd4-0696-4fd5-869c-7beb89674856 031e46f27ac173193e1e0e7961bb2e7f {"aliquot_tag": "ALQ_55747a64", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02928.RNA-Seq.S2_L001_R2.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R2_001.fastq.gz 3685834698 FASTQ S2_L001_R2 unaligned CPTAC3 a3f15a80-ecce-40d1-bbd4-5f1d2d7efbde 876b292ba3528b482e2a2ca12665d342 {"aliquot_tag": "ALQ_55747a64", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02928.RNA-Seq.S5_L002_R1.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R1_001.fastq.gz 3911326573 FASTQ S5_L002_R1 unaligned CPTAC3 9b92e501-dbc4-4f09-b7eb-e9b752a60ecd c4ea496cea7d05e18f13aa0014b18c27 {"aliquot_tag": "ALQ_8a834de0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.RNA-Seq.S5_L002_R2.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R2_001.fastq.gz 4217991316 FASTQ S5_L002_R2 unaligned CPTAC3 8182cae1-45d1-42d4-92b8-523b666bb444 667fb9252babf1dc83a9e401d39b04ca {"aliquot_tag": "ALQ_8a834de0", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.RNA-Seq.transcriptome.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.transcriptome.gdc_realn.bam 9045226050 BAM transcriptome harmonized CPTAC3 f8ae91e0-fcdd-4b42-94f3-211d5dd0587e 705907426b70ba8c3122cc3abdea3299 {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.RNA-Seq.transcriptome.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.transcriptome.gdc_realn.bam 7788787204 BAM transcriptome harmonized CPTAC3 ba1a3a9f-6490-4dd3-839a-aae12836d5a1 9b1489e56c196208565c4dcb5e55d450 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor"} -C3N-02928.WGS.N C3N-02928 LUAD WGS blood_normal CPT0184730002 CPT0184730002.WholeGenome.RP-1303.bam 61533454482 BAM aligned CPTAC3 c80cd6f3-13a3-4f22-88dc-cd716609a2e6 c49703bf72add2c06bc6b88731b3ff6a {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02928.WGS.N.hg38 C3N-02928 LUAD WGS blood_normal CPT0184730002 ffa07dac-34a4-4540-9bf0-02dcfb32a04b_wgs_gdc_realn.bam 89222048185 BAM harmonized CPTAC3 66686e8c-66cf-4bb7-a77e-0cafa77c4750 8b804eb2553130fe252de917f9131186 {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02928.WGS.T C3N-02928 LUAD WGS tumor CPT0184670007 CPT0184670007.WholeGenome.RP-1303.bam 78013736050 BAM aligned CPTAC3 16aed900-5fa1-489b-b48d-e8ab97d5b3fc 4994fb1bf1ccf0c7f16d719a3d2431f5 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor"} -C3N-02928.WGS.T.hg38 C3N-02928 LUAD WGS tumor CPT0184670007 bd687106-979e-47ec-9841-64c8b6c99d8a_wgs_gdc_realn.bam 114054733628 BAM harmonized CPTAC3 8019441a-99f8-48d3-802f-3c88a1e75883 392204397d1b48bd87476767d1d62b64 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor"} -C3N-02928.WXS.A C3N-02928 LUAD WXS tissue_normal CPT0184690006 CPT0184690006.WholeExome.RP-1303.bam 17754335995 BAM aligned CPTAC3 292a7718-192a-4663-ba5f-91aa1ffc246f 161bdf1d3cf623276d07a4b07cf5ca0b {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.WXS.A.hg38 C3N-02928 LUAD WXS tissue_normal CPT0184690006 0689087e-1275-46bf-90e0-c20db204d564_wxs_gdc_realn.bam 24716172022 BAM harmonized CPTAC3 5cd5a1a6-6b4f-4ae4-852b-6d3d6983c036 df1e9982a36990e045854b68f51e3aff {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02928.WXS.N C3N-02928 LUAD WXS blood_normal CPT0184730002 CPT0184730002.WholeExome.RP-1303.bam 27184062755 BAM aligned CPTAC3 1ac800bc-e0b5-46d7-bfd2-818c635b5c6e e71e144db91023021348658d1b91b882 {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02928.WXS.N.hg38 C3N-02928 LUAD WXS blood_normal CPT0184730002 ffa07dac-34a4-4540-9bf0-02dcfb32a04b_wxs_gdc_realn.bam 37381075774 BAM harmonized CPTAC3 ab19a326-7d5c-4e69-b669-49dd0e238120 a22321a5a2a22a968547a781473ba0b9 {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal"} -C3N-02928.WXS.T C3N-02928 LUAD WXS tumor CPT0184670007 CPT0184670007.WholeExome.RP-1303.bam 18295179909 BAM aligned CPTAC3 988d6707-4c7f-4e35-857d-458da8aae688 08ebb4541c5e91f1b8ffd83611434a3f {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor"} -C3N-02928.WXS.T.hg38 C3N-02928 LUAD WXS tumor CPT0184670007 bd687106-979e-47ec-9841-64c8b6c99d8a_wxs_gdc_realn.bam 25235581139 BAM harmonized CPTAC3 9367b8c0-5e22-4a20-818f-504cf7073fb7 6120bc2a6216277804becd4f5af67d32 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor"} -C3N-02929.MethArray.Green.A C3N-02929 LUAD Methylation_Array tissue_normal CPT0184760006 203219720203_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 96f908e6-2f75-494f-afcf-8118196e2f16 9686ad53c404be2398e0957ee40f473b {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.MethArray.Green.T C3N-02929 LUAD Methylation_Array tumor CPT0184740007 203219760065_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5214be05-7a73-41d7-803e-0bf5f7b53255 a9b2463e3006b43ce9b747139e76dd68 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor"} -C3N-02929.MethArray.Red.A C3N-02929 LUAD Methylation_Array tissue_normal CPT0184760006 203219720203_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 3131d8fb-5967-4dee-8b06-42d07037fbcf 4fed8061a70719f75efdbe3770cc9be0 {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.MethArray.Red.T C3N-02929 LUAD Methylation_Array tumor CPT0184740007 203219760065_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 4c40c9c3-ad58-4b24-8a40-8e0a43597820 209ca895bfe6aa7584618a7bc748e10b {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor"} -C3N-02929.miRNA-Seq.A.hg38 C3N-02929 LUAD miRNA-Seq tissue_normal CPT0184760009 bacff72b-35bb-4d68-ac47-cc2fd96a515a_mirnaseq_gdc_realn.bam 235714601 BAM harmonized CPTAC3 c3ff5a38-3872-4633-b380-8268f9166098 8be3bb7b901667fe3e400e61b156ef5b {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.miRNA-Seq.S16_L004_R1.A C3N-02929 LUAD miRNA-Seq tissue_normal CPT0184760009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGTCA_S16_L004_R1_001.unaln.bam 210550525 BAM S16_L004_R1 unaligned CPTAC3 1b14277f-6bfa-4330-b3ff-1ae0ce0d4207 dd0edeabdab4cf0f402cff519d0e9c43 {"aliquot_tag": "ALQ_c38f0994", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.miRNA-Seq.S40_L007_R1.T C3N-02929 LUAD miRNA-Seq tumor CPT0184740010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L007_R1_001.unaln.bam 259525760 BAM S40_L007_R1 unaligned CPTAC3 58566506-a61f-470d-a4ae-59b82793c08d 47b1437ce65d34fb1f5ec46b9f9196f7 {"aliquot_tag": "ALQ_d988d311", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02929.miRNA-Seq.T.hg38 C3N-02929 LUAD miRNA-Seq tumor CPT0184740010 d42c51a3-93f8-4177-a82b-7a8421c2fad7_mirnaseq_gdc_realn.bam 283480965 BAM harmonized CPTAC3 c52bc40a-cafa-4023-9d50-01eb07f77fb8 71f7baba357df8ef1c8cef7e0de8f630 {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor"} -C3N-02929.RNA-Seq.chimeric.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.chimeric.gdc_realn.bam 33863903 BAM chimeric harmonized CPTAC3 6bcb8441-a6e7-4ff5-9031-05f7bb2220f5 71bc3ad59674ead0bdd5b5e117e7a156 {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.RNA-Seq.chimeric.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.chimeric.gdc_realn.bam 34986018 BAM chimeric harmonized CPTAC3 84e5ced3-3897-4a85-bcfd-e803913108a7 fc6c4cf77fe9adb34e777a1978af03d7 {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor"} -C3N-02929.RNA-Seq.genomic.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.genomic.gdc_realn.bam 7529693940 BAM genomic harmonized CPTAC3 9f361ebb-d288-4553-9d89-892bd4ffa95c d33feecdf6484ac5b421d22edebf7a4a {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.RNA-Seq.genomic.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.genomic.gdc_realn.bam 9282145949 BAM genomic harmonized CPTAC3 21df8a07-bf32-4c09-be3f-9ee21613d65b 23237912abc2a14c308c0a7273297bde {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor"} -C3N-02929.RNA-Seq.S10_L003_R1.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R1_001.fastq.gz 4007957697 FASTQ S10_L003_R1 unaligned CPTAC3 8e37dcc6-a449-4543-acbd-05487d6a7552 7c12e212795d4baddaef24f95b8555b1 {"aliquot_tag": "ALQ_d988d311", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02929.RNA-Seq.S10_L003_R2.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R2_001.fastq.gz 4033348066 FASTQ S10_L003_R2 unaligned CPTAC3 6471a9ad-53c2-440a-bd9e-4fb462b0128d 3e79712d91bd90bac5fd7447e225a1c4 {"aliquot_tag": "ALQ_d988d311", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02929.RNA-Seq.S8_L002_R1.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R1_001.fastq.gz 3468743452 FASTQ S8_L002_R1 unaligned CPTAC3 45754be4-970e-4c89-a322-bc9e6890a22f a295ca374813017c5b731076fb4140b4 {"aliquot_tag": "ALQ_c38f0994", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.RNA-Seq.S8_L002_R2.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R2_001.fastq.gz 3684972977 FASTQ S8_L002_R2 unaligned CPTAC3 d85640d9-4b91-4181-a3ee-3e35b31164da e85588d7a3689b84da381b7bb7171f5e {"aliquot_tag": "ALQ_c38f0994", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.RNA-Seq.transcriptome.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.transcriptome.gdc_realn.bam 8742393326 BAM transcriptome harmonized CPTAC3 05b62da0-9314-4a46-aefc-e152d62fac9c 0ee7faf8e54c6810e96ba8f815a08ed0 {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.RNA-Seq.transcriptome.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.transcriptome.gdc_realn.bam 7897501868 BAM transcriptome harmonized CPTAC3 5b83f828-9e96-477f-82d3-a13ccf4e1285 eb383e3c21f97ef9459f1ce18976acdb {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor"} -C3N-02929.WGS.N C3N-02929 LUAD WGS blood_normal CPT0184800002 CPT0184800002.WholeGenome.RP-1303.bam 104459068175 BAM aligned CPTAC3 5544adbe-f027-402e-b086-0081d1864c7e 31f099a48fd64d676974861ba0bad74a {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal"} -C3N-02929.WGS.N.hg38 C3N-02929 LUAD WGS blood_normal CPT0184800002 414fe559-b577-4021-988d-edf42348185d_wgs_gdc_realn.bam 151886995124 BAM harmonized CPTAC3 e1e37906-ac43-42fe-af73-58ceb9e2b10b d088fe6c41fd56d58a0fbcec9664cdc9 {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal"} -C3N-02929.WGS.T C3N-02929 LUAD WGS tumor CPT0184740007 CPT0184740007.WholeGenome.RP-1303.bam 134531338798 BAM aligned CPTAC3 686ce479-90d8-41e8-8e61-a6554954a257 1f577347d469730c3adf5a744a0ce196 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor"} -C3N-02929.WGS.T.hg38 C3N-02929 LUAD WGS tumor CPT0184740007 94f45d68-628c-4d05-a253-85d4a19284e6_wgs_gdc_realn.bam 193812907750 BAM harmonized CPTAC3 c4c733b6-7a7a-47ac-9904-5095233a5a25 d0f09c1d0162cee05ce046fb0cb76ef2 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor"} -C3N-02929.WXS.A C3N-02929 LUAD WXS tissue_normal CPT0184760006 CPT0184760006.WholeExome.RP-1303.bam 20626072962 BAM aligned CPTAC3 046a0e84-f491-4939-87b6-87302c0aa15e ec272c951a411ed38e52dc489dcbeb71 {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.WXS.A.hg38 C3N-02929 LUAD WXS tissue_normal CPT0184760006 c8ae16a8-7445-4dab-8ed2-1f1c7dbc0129_wxs_gdc_realn.bam 28258632727 BAM harmonized CPTAC3 51dcdbc8-1789-49f2-9187-44ce36674c06 3f1936c5ef508be7d07a680341c374ce {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02929.WXS.N C3N-02929 LUAD WXS blood_normal CPT0184800002 CPT0184800002.WholeExome.RP-1303.bam 23568609888 BAM aligned CPTAC3 701c1282-62c9-4ba4-837a-554746235d32 3af8ef71c040634aa3d315ab0c8b3e3c {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal"} -C3N-02929.WXS.N.hg38 C3N-02929 LUAD WXS blood_normal CPT0184800002 414fe559-b577-4021-988d-edf42348185d_wxs_gdc_realn.bam 32190584639 BAM harmonized CPTAC3 864a3d57-5ac4-4c39-9e16-6720f7985633 a3600f5f8ec2bb38fb5fe319b5279719 {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal"} -C3N-02929.WXS.T C3N-02929 LUAD WXS tumor CPT0184740007 CPT0184740007.WholeExome.RP-1303.bam 18398967738 BAM aligned CPTAC3 2a247459-970c-47fa-90a5-ae276f4f866a 51dc85176b266b75909efbc690216008 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor"} -C3N-02929.WXS.T.hg38 C3N-02929 LUAD WXS tumor CPT0184740007 94f45d68-628c-4d05-a253-85d4a19284e6_wxs_gdc_realn.bam 25768139029 BAM harmonized CPTAC3 39b71d68-828c-4a9c-a69e-ea091172401e e210fdd93dec879ae72190601fe05f92 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor"} -C3N-02930.ANN_d565482f.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.chimeric.gdc_realn.bam 244737706 BAM chimeric harmonized CPTAC3 5964dade-522f-4403-a865-9ee8ba13bce4 f26bb25ee79852f6fa2f6f1cf7e9ebe2 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.ANN_d565482f.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.genomic.gdc_realn.bam 12934957545 BAM genomic harmonized CPTAC3 cc56c7bd-bcfb-4feb-98ba-d70c3d649b9c f526ef70bac4f2aa605e77404ef79480 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.ANN_d565482f.RNA-Seq.S5_L006_R1.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R1_001.fastq.gz 5164758172 FASTQ S5_L006_R1 unaligned CPTAC3 6d20ad09-33cb-4eb3-bd90-a089cdac81f1 f742a976cf1c846ddd3c86d992d57247 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02930.ANN_d565482f.RNA-Seq.S5_L006_R2.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R2_001.fastq.gz 5580827454 FASTQ S5_L006_R2 unaligned CPTAC3 606995fe-dd65-4648-bffa-23b2b9b37677 45d5f319c2b08d68bc599a927adfbde4 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02930.ANN_d565482f.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.transcriptome.gdc_realn.bam 13975149243 BAM transcriptome harmonized CPTAC3 722b9374-2ec6-4a42-bd68-688fea14d19f 7e61a2c52867eb91fa496a97c79660c0 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_3b6b2903.WXS.T C3N-02930 PDA WXS tumor CPT0184810036 CPT0184810036.WholeExome.RP-1303.bam 24027429743 BAM aligned CPTAC3 68d6d8e3-e2bb-45d1-b46a-4a25d0ab45e8 e30640729ebb82042399686c5c50e00c {"aliquot_tag": "DUP_3b6b2903", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_3b6b2903.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810036 196d2508-1e9a-4066-852b-db2b6d675026_wxs_gdc_realn.bam 33641984581 BAM harmonized CPTAC3 b2537afb-b18b-41c5-b14f-3e0328300b01 a9fd83cd22fa254f075323ef27645607 {"aliquot_tag": "DUP_3b6b2903", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_4404b4b.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.chimeric.gdc_realn.bam 406730343 BAM chimeric harmonized CPTAC3 2f09aba8-039e-4537-a1df-260b97ea0505 b1a5124bc5246757e9a5e2ae3d18155d {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_4404b4b.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.genomic.gdc_realn.bam 6808360565 BAM genomic harmonized CPTAC3 70c69d58-589e-4ed1-8bd4-27f23e6edb05 ac18130c0b3165cfb4af8408dd76486c {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_4404b4b.RNA-Seq.S13_L005_R1.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R1_001.fastq.gz 3132344280 FASTQ S13_L005_R1 unaligned CPTAC3 9ec81a17-9216-47db-8248-fbf2bc09ab44 b5a870a059ee2a0fe53f2db227ff97ba {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_4404b4b.RNA-Seq.S13_L005_R2.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R2_001.fastq.gz 3395584601 FASTQ S13_L005_R2 unaligned CPTAC3 f1d2432f-8b7b-4595-90a9-c5f69fc1373f afd248fde572fec3a5a68108e2869f60 {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_4404b4b.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.transcriptome.gdc_realn.bam 8711958378 BAM transcriptome harmonized CPTAC3 c94b25f2-53a2-4d54-abe3-3c3631ad730d 14b33f08dcb4382d2627c2766606dd0b {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_4c6c1995.WXS.T C3N-02930 PDA WXS tumor CPT0184810037 CPT0184810037.WholeExome.RP-1303.bam 26427797846 BAM aligned CPTAC3 534eb6f6-6d45-421a-9012-7d63e3328c9e 12914a7f98577225005ef77951d22397 {"aliquot_tag": "DUP_4c6c1995", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_4c6c1995.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810037 0f5cd2c3-cc7e-46aa-b49f-306ce900c2e6_wxs_gdc_realn.bam 36671323296 BAM harmonized CPTAC3 0b550ac4-314b-48d9-b6c5-529373e75244 0a6e87876cc5d226cb1bd14a0a12cd94 {"aliquot_tag": "DUP_4c6c1995", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_742abfc4.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.chimeric.gdc_realn.bam 492229252 BAM chimeric harmonized CPTAC3 39803b8d-379a-4a4f-b37a-1553bf7521ea 120d59465175ef594056efdcf6a9bba2 {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_742abfc4.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.genomic.gdc_realn.bam 8791491817 BAM genomic harmonized CPTAC3 cbdde07f-2faa-46cc-a32a-d0d5f30fb598 2de6a2bdade3a2adf7626554521bf464 {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_742abfc4.RNA-Seq.S13_L004_R1.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 4111601063 FASTQ S13_L004_R1 unaligned CPTAC3 b4128669-cb33-4f8d-ba06-bc95a0ddec89 cd736514144d6737ad71de827ea4045b {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_742abfc4.RNA-Seq.S13_L004_R2.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4449924393 FASTQ S13_L004_R2 unaligned CPTAC3 1af7d724-00a6-4f53-976c-2ce4490af71b 9b97a239defcf9a4e8c783517288ebea {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_742abfc4.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.transcriptome.gdc_realn.bam 9499263695 BAM transcriptome harmonized CPTAC3 e9278635-e4d7-4e6e-bb84-da357a3528cd 6aaa4e066bdc24f55523e67cf6ca8f6a {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_908e7907.RNA-Seq.chimeric.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.chimeric.gdc_realn.bam 71706368 BAM chimeric harmonized CPTAC3 95b09035-52fe-4076-82cf-f36b9d365969 13b5e89e9cd073defb40fc28ed0cfab7 {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_908e7907.RNA-Seq.genomic.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.genomic.gdc_realn.bam 7243600398 BAM genomic harmonized CPTAC3 820210cc-d1ef-4fc5-878e-e035062b009a dda5f1148caa912974120b4386c6d8c0 {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_908e7907.RNA-Seq.S12_L003_R1.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R1_001.fastq.gz 2560501420 FASTQ S12_L003_R1 unaligned CPTAC3 8264bd80-e4a0-4a2c-8408-2bfd66488507 9095ab32e5484cda0fae03dc07de7d2c {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_908e7907.RNA-Seq.S12_L003_R2.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R2_001.fastq.gz 2928252932 FASTQ S12_L003_R2 unaligned CPTAC3 2dc602cb-63e6-4a88-9894-a25db0e1579e d82e3b8b3b38778706aacc100a5709ae {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_908e7907.RNA-Seq.transcriptome.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.transcriptome.gdc_realn.bam 6483025551 BAM transcriptome harmonized CPTAC3 e8bae17a-b03d-4d8c-a119-62e1ac9341c9 fc853eb5a64c325538c4003d87ff9252 {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_986b4b79.WXS.N C3N-02930 PDA WXS blood_normal CPT0184870002 CPT0184870002.WholeExome.RP-1303.bam 28812687466 BAM aligned CPTAC3 992a9872-6083-4e55-a965-d1b155e5b40b 119dcad76c636d32f270c3ce7a1b1060 {"aliquot_tag": "DUP_986b4b79", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02930.DUP_986b4b79.WXS.N.hg38 C3N-02930 PDA WXS blood_normal CPT0184870002 b784e42c-5dcb-4048-a06b-19e4406b4463_wxs_gdc_realn.bam 40257197690 BAM harmonized CPTAC3 294e7e56-c709-478f-bb12-dfefa496f3a3 0ab7e7097152ca55115a0bd70fa34f4b {"aliquot_tag": "DUP_986b4b79", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02930.DUP_a6135764.RNA-Seq.chimeric.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.chimeric.gdc_realn.bam 345596713 BAM chimeric harmonized CPTAC3 a556b7d5-9e13-4618-b684-89c2fed282cc b50e3fdeb47d1e6f9376c6919106369e {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_a6135764.RNA-Seq.genomic.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.genomic.gdc_realn.bam 10492684793 BAM genomic harmonized CPTAC3 69c6b6fd-1380-47d3-9aa7-40072afca3cf fbb95b55cb248220f02611cd714b104b {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_a6135764.RNA-Seq.S16_L005_R1.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R1_001.fastq.gz 4406428554 FASTQ S16_L005_R1 unaligned CPTAC3 b9133cec-ed9e-4b9f-8d4e-d850267d26f5 57967178f8112219c79bebf8370e4d21 {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_a6135764.RNA-Seq.S16_L005_R2.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R2_001.fastq.gz 4798004933 FASTQ S16_L005_R2 unaligned CPTAC3 fb7abba1-1af9-4e67-b594-70d813cff2c5 7d788eed23310f940bb89b64c3ffdd68 {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_a6135764.RNA-Seq.transcriptome.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.transcriptome.gdc_realn.bam 11452239027 BAM transcriptome harmonized CPTAC3 504b3cde-fea4-458c-b74d-87523e3a2a29 7177cd6fd4084b1e31dd59fb71f5fd6a {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02930.DUP_dcd30404.WXS.T C3N-02930 PDA WXS tumor CPT0184810038 CPT0184810038.WholeExome.RP-1303.bam 21753554456 BAM aligned CPTAC3 db71c494-050c-426e-b1f4-093bbeea206f d9098346a9e4c41a8a7a01fae36273d6 {"aliquot_tag": "DUP_dcd30404", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02930.DUP_dcd30404.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810038 00a57e9e-5c8e-47bc-a71d-d220116d32d0_wxs_gdc_realn.bam 30663764810 BAM harmonized CPTAC3 50ecb347-19a6-4724-9177-fdaa41c061a6 dac3f76e53500431556cf288aa8062ea {"aliquot_tag": "DUP_dcd30404", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02939.MethArray.Green.A C3N-02939 PDA Methylation_Array tissue_normal CPT0208500007 203561620159_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ecbf50fb-5c39-43e7-9f03-49129e62f019 635f52bf7e9e3a6f2a4f7caf84863cb3 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02939.MethArray.Green.T C3N-02939 PDA Methylation_Array tumor CPT0208480008 203561450008_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b16c21f2-afe6-4136-bf8d-19daee2e44fb 18ea732623ba16b582eaf932a8987b39 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor"} -C3N-02939.MethArray.Red.A C3N-02939 PDA Methylation_Array tissue_normal CPT0208500007 203561620159_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 b997ac95-9ad1-44d2-a8fa-08339c85018a 54d80fdf69f2ae5d341651a171e5f568 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02939.MethArray.Red.T C3N-02939 PDA Methylation_Array tumor CPT0208480008 203561450008_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 9fe6f13e-a2b2-4ee9-a630-51adc6429ead 1a3f2c3c2d0c3028e1f940f65377614a {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor"} -C3N-02939.miRNA-Seq.S9_L004_R1.T C3N-02939 PDA miRNA-Seq tumor CPT0208480011 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGGCG_S9_L004_R1_001.unaln.bam 137446607 BAM S9_L004_R1 unaligned CPTAC3 66779b53-72de-4036-8975-d4c1c9a27edb 4050dbc0804c913f3822d1e76e3b7c82 {"aliquot_tag": "ALQ_c023312c", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02939.miRNA-Seq.T.hg38 C3N-02939 PDA miRNA-Seq tumor CPT0208480011 21cc21ff-e338-49c4-871e-60088108aad4_mirnaseq_gdc_realn.bam 156064989 BAM harmonized CPTAC3 e884c325-e6e6-4dab-9f94-ee597aac12b6 886eb96d828c8c51f7cfa6e75c1605c0 {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor"} -C3N-02939.RNA-Seq.chimeric.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.chimeric.gdc_realn.bam 33470583 BAM chimeric harmonized CPTAC3 20ae67f0-8c0a-4961-af1f-e9c62229c78e 3d815072ceb45a4d0a2cb5ac9b28cbc5 {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor"} -C3N-02939.RNA-Seq.genomic.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.genomic.gdc_realn.bam 8342862575 BAM genomic harmonized CPTAC3 ae55e835-ff8a-4e0b-b3ce-fb5c3ba0ebd8 5902984c673b1f831bcc42e413889cc2 {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor"} -C3N-02939.RNA-Seq.S2_L001_R1.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R1_001.fastq.gz 3906043882 FASTQ S2_L001_R1 unaligned CPTAC3 ffd01218-e59c-4f40-8c84-4c195fd94a62 d6c97ce6930e61dec1808d4a17c9ba44 {"aliquot_tag": "ALQ_c023312c", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02939.RNA-Seq.S2_L001_R2.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R2_001.fastq.gz 4221871223 FASTQ S2_L001_R2 unaligned CPTAC3 45a05eb7-ecdc-46f4-98f2-3f832344269f 9a22dd700b15427fbb7541a78ae97699 {"aliquot_tag": "ALQ_c023312c", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02939.RNA-Seq.transcriptome.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.transcriptome.gdc_realn.bam 11523593974 BAM transcriptome harmonized CPTAC3 102ee5b7-af73-4ba1-92c3-ea4b0dcc5ee7 0a10f1e3f99e0b17a0f5c5ce503a0a4f {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor"} -C3N-02939.WGS.N C3N-02939 PDA WGS blood_normal CPT0208540002 CPT0208540002.WholeGenome.RP-1303.bam 72421600755 BAM aligned CPTAC3 4771a883-04a4-4c46-afcd-5047c6750e0c df67b8132c986870befcbbb7529fc573 {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02939.WGS.N.hg38 C3N-02939 PDA WGS blood_normal CPT0208540002 786fe640-bffb-4258-9f8e-1fd04e0500bb_wgs_gdc_realn.bam 105810346763 BAM harmonized CPTAC3 9c481c93-8369-4946-b619-4b8e541dbdc1 6c62be682a4ffe872b1a7550db31963c {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02939.WGS.T C3N-02939 PDA WGS tumor CPT0208480008 CPT0208480008.WholeGenome.RP-1303.bam 114037483343 BAM aligned CPTAC3 d9f127b6-9afc-4337-89e0-8fe83d4751d2 4f3c7e46a2f43c05af742dc099bc3878 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor"} -C3N-02939.WGS.T.hg38 C3N-02939 PDA WGS tumor CPT0208480008 ab9266b0-8f9a-414b-b1eb-13b2bf112be9_wgs_gdc_realn.bam 169078878676 BAM harmonized CPTAC3 1bdd3ad1-c4f2-47cd-aca3-9be754fc8425 1528347f2ccaee861f1b7394a4f4d272 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor"} -C3N-02939.WXS.A C3N-02939 PDA WXS tissue_normal CPT0208500007 CPT0208500007.WholeExome.RP-1303.bam 18536450389 BAM aligned CPTAC3 3207a14f-3766-4de4-8ef9-11d9d5e162f1 06854014bbc3a14a733ebddc4f7bfdf9 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02939.WXS.A.hg38 C3N-02939 PDA WXS tissue_normal CPT0208500007 54645fb4-765f-440b-bf28-8c6afaa196a1_wxs_gdc_realn.bam 25935246671 BAM harmonized CPTAC3 cae751ef-8ced-4189-a610-36667748c4ba efd27740eb8d67ecba6323465927e316 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02939.WXS.N C3N-02939 PDA WXS blood_normal CPT0208540002 CPT0208540002.WholeExome.RP-1303.bam 26536229696 BAM aligned CPTAC3 54a45716-8d17-48e4-be6c-07582c85c249 cc730ff35a80fc3e4221579b98c8f8d6 {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02939.WXS.N.hg38 C3N-02939 PDA WXS blood_normal CPT0208540002 786fe640-bffb-4258-9f8e-1fd04e0500bb_wxs_gdc_realn.bam 35602459773 BAM harmonized CPTAC3 e5040d7c-8617-4309-ab59-a6b5c3677706 2d9c3f18700c4ad2992f31a4b852c513 {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02939.WXS.T C3N-02939 PDA WXS tumor CPT0208480008 CPT0208480008.WholeExome.RP-1303.bam 53875383988 BAM aligned CPTAC3 11f1eef9-cc77-4962-8a04-6bfdf3caf376 67e03ca494d94630960d259dfff851f1 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor"} -C3N-02939.WXS.T.hg38 C3N-02939 PDA WXS tumor CPT0208480008 ab9266b0-8f9a-414b-b1eb-13b2bf112be9_wxs_gdc_realn.bam 73672111659 BAM harmonized CPTAC3 cee54ffe-5697-4618-845b-ef9df77d4870 758b1d378eac412a5719b4ba1bded783 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor"} -C3N-02940.MethArray.Green.T C3N-02940 PDA Methylation_Array tumor CPT0208550008 203561620159_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d0c3c995-f9c6-40aa-a4a1-0c282556ae3d a95283211bdb2d9295312c5aa12302fb {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor"} -C3N-02940.MethArray.Red.T C3N-02940 PDA Methylation_Array tumor CPT0208550008 203561620159_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 eb4df7b6-cb87-4bc7-82b7-3bce44e42b0d c08c799c94a493b8f18ec68ebefcd38a {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor"} -C3N-02940.miRNA-Seq.S10_L004_R1.T C3N-02940 PDA miRNA-Seq tumor CPT0208550011 190712_UNC32-K00270_0192_BH7HL3BBXY_CATGGC_S10_L004_R1_001.unaln.bam 217144472 BAM S10_L004_R1 unaligned CPTAC3 ed9e8e30-267d-4701-b546-3d32dd07d4b5 7fcff98e647194ff127e214ea67c6677 {"aliquot_tag": "ALQ_f3ef2638", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02940.miRNA-Seq.T.hg38 C3N-02940 PDA miRNA-Seq tumor CPT0208550011 ab5cec90-101d-4298-b3a9-b9b262166e74_mirnaseq_gdc_realn.bam 243116604 BAM harmonized CPTAC3 4934fc92-aaf2-4f2e-8040-0b258029e7b4 659e486ae9ab8aab77ba297e6ad68cf1 {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor"} -C3N-02940.RNA-Seq.chimeric.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.chimeric.gdc_realn.bam 32706474 BAM chimeric harmonized CPTAC3 bd5cab3d-6f15-4763-bc09-8d8aca111f4c 4e74363ca84ea662f7e1cbff98c445be {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor"} -C3N-02940.RNA-Seq.genomic.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.genomic.gdc_realn.bam 8921882831 BAM genomic harmonized CPTAC3 0b787e14-e52c-41da-bb85-b82ff4e326c1 134d9ca3c27b34f6bfd49a9524b810e1 {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor"} -C3N-02940.RNA-Seq.S1_L001_R1.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R1_001.fastq.gz 4151583531 FASTQ S1_L001_R1 unaligned CPTAC3 12195ec0-93e5-4954-b0b7-d370a3bb987c f518659fb01684adc09910f33a830dc0 {"aliquot_tag": "ALQ_f3ef2638", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02940.RNA-Seq.S1_L001_R2.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R2_001.fastq.gz 4556358988 FASTQ S1_L001_R2 unaligned CPTAC3 64eb7ddd-348c-47f6-ad53-e7c62b014ee5 588b1a5745dfb40db8c9ba8bb22f4f67 {"aliquot_tag": "ALQ_f3ef2638", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02940.RNA-Seq.transcriptome.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.transcriptome.gdc_realn.bam 12395387771 BAM transcriptome harmonized CPTAC3 a094f9e9-1ceb-49c0-b780-de87fc1204a3 c1dab14b4c1b6e0703ec94d029aba75e {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor"} -C3N-02940.WGS.N C3N-02940 PDA WGS blood_normal CPT0208610002 CPT0208610002.WholeGenome.RP-1303.bam 84745515077 BAM aligned CPTAC3 500425cd-9ad0-4658-a53c-dcc7bb8b8409 c71cc27266cb39643aec1155b84c617b {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02940.WGS.N.hg38 C3N-02940 PDA WGS blood_normal CPT0208610002 44b36cfd-aba7-45da-a49a-14d4223dd59c_wgs_gdc_realn.bam 122231007671 BAM harmonized CPTAC3 45b0a730-f9e2-48d5-9f4b-29839c51a300 0541b1489ca6272cee85c84a1c53a8e6 {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02940.WGS.T C3N-02940 PDA WGS tumor CPT0208550008 CPT0208550008.WholeGenome.RP-1303.bam 131319665980 BAM aligned CPTAC3 09fe96ea-5f2a-4df6-adcd-775c54ae3cc7 ef2c89e7577e8f161603ba34ef269c92 {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor"} -C3N-02940.WGS.T.hg38 C3N-02940 PDA WGS tumor CPT0208550008 cbcf3892-c1ff-4758-961a-09ae3748493e_wgs_gdc_realn.bam 191650914854 BAM harmonized CPTAC3 ab885886-c339-4bad-b00e-598092afd5f7 a5f056737f33e33c2e3a2486b9181f6e {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor"} -C3N-02940.WXS.N C3N-02940 PDA WXS blood_normal CPT0208610002 CPT0208610002.WholeExome.RP-1303.bam 26847125911 BAM aligned CPTAC3 75956709-2867-4bc7-8722-b359ab77a72f 66a7b0b913d566bbbdbef5bd2b590c81 {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02940.WXS.N.hg38 C3N-02940 PDA WXS blood_normal CPT0208610002 44b36cfd-aba7-45da-a49a-14d4223dd59c_wxs_gdc_realn.bam 37107979909 BAM harmonized CPTAC3 a888a917-2ee1-4427-a20f-3420fa6ef756 5328ae15269a6dd2e7c65128ea60674d {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-02940.WXS.T C3N-02940 PDA WXS tumor CPT0208550008 CPT0208550008.WholeExome.RP-1303.bam 45894420517 BAM aligned CPTAC3 c56cc3ff-e08e-42a9-adc3-b9aac4a6c0c3 450f0e879e9efdefe6843fd8e203f2bf {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor"} -C3N-02940.WXS.T.hg38 C3N-02940 PDA WXS tumor CPT0208550008 cbcf3892-c1ff-4758-961a-09ae3748493e_wxs_gdc_realn.bam 63808639267 BAM harmonized CPTAC3 8f37b2fd-49c1-434c-b816-78eb8b5a0df1 7a792f6610d3fc8fbafe222e287a450a {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor"} -C3N-02944.MethArray.Green.A C3N-02944 PDA Methylation_Array tissue_normal CPT0208710007 203561450084_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e957685e-5a25-44a4-b1d5-cd556cc7f517 8a9fdce637cd91343e68f04b9ee4c34f {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02944.MethArray.Green.T C3N-02944 PDA Methylation_Array tumor CPT0208690013 203561620008_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 12ecc1ea-a74f-4e7e-90a2-06347d475ebd 1d317aa09854db36c7579032d455e901 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor"} -C3N-02944.MethArray.Red.A C3N-02944 PDA Methylation_Array tissue_normal CPT0208710007 203561450084_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 945b3794-144f-4695-ac5c-2eb689e40fa7 1898f2993f343d1a8011955c5a5f4fcb {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02944.MethArray.Red.T C3N-02944 PDA Methylation_Array tumor CPT0208690013 203561620008_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 6a544504-3d0f-4316-805b-00a9694fa5d5 5cc199d6f283d6d3ee4a8c6d1a68ad73 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor"} -C3N-02944.miRNA-Seq.S14_L003_R1.T C3N-02944 PDA miRNA-Seq tumor CPT0208690010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAACTA_S14_L003_R1_001.unaln.bam 272027155 BAM S14_L003_R1 unaligned CPTAC3 ab6865fe-00b0-4589-b19b-9afada7ce28f 8a507e94bff060eb71d8ea2276dd485c {"aliquot_tag": "ALQ_c78c8901", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02944.miRNA-Seq.T.hg38 C3N-02944 PDA miRNA-Seq tumor CPT0208690010 98aa57dc-0f8f-4ce8-97db-bccef77dad07_mirnaseq_gdc_realn.bam 309680936 BAM harmonized CPTAC3 0afc362c-0c67-4c09-8ea3-9919101c5b6e da60daf2f5985027a194f6d129089db7 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor"} -C3N-02944.RNA-Seq.chimeric.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.chimeric.gdc_realn.bam 39273050 BAM chimeric harmonized CPTAC3 3a044b64-a185-45a8-b63c-2d88ade2e02f df66ff7a715420988fdda90bbfe26c91 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor"} -C3N-02944.RNA-Seq.genomic.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.genomic.gdc_realn.bam 7926634596 BAM genomic harmonized CPTAC3 8bc97bd1-69e9-4fc1-9d52-c1810ec51ef9 c8f9edaf39118db0b2f322ad3f9beba4 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor"} -C3N-02944.RNA-Seq.S22_L007_R1.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 3715954933 FASTQ S22_L007_R1 unaligned CPTAC3 a16118f0-9917-462e-9f2b-e0dccad0e451 0cda7e80bd51d38aae619f812743cb97 {"aliquot_tag": "ALQ_c78c8901", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02944.RNA-Seq.S22_L007_R2.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4190689530 FASTQ S22_L007_R2 unaligned CPTAC3 3742f936-63b0-4d14-a370-6a0f99de9ec3 e25afb246a4bb6855a2d01e25df92513 {"aliquot_tag": "ALQ_c78c8901", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02944.RNA-Seq.transcriptome.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.transcriptome.gdc_realn.bam 10589680598 BAM transcriptome harmonized CPTAC3 572b6318-0628-40c8-a54e-5b034138ba24 9f8b808926f8f2588960de8ee3864ec5 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor"} -C3N-02944.WGS.N C3N-02944 PDA WGS blood_normal CPT0208750002 CPT0208750002.WholeGenome.RP-1303.bam 73333015827 BAM aligned CPTAC3 06aa9719-fb58-48e3-ac5b-f2940b060118 34550eadc3a0bb8a8c13994306f2a450 {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02944.WGS.N.hg38 C3N-02944 PDA WGS blood_normal CPT0208750002 0b0faaf9-f88c-412a-a9b9-6b138aabe624_wgs_gdc_realn.bam 105736994637 BAM harmonized CPTAC3 58123efd-28db-4505-8149-7c5a150f5b3d c8f236796adc671f1fb42a21307e5fab {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02944.WGS.T C3N-02944 PDA WGS tumor CPT0208690013 CPT0208690013.WholeGenome.RP-1303.PDO-18613.bam 142807974513 BAM aligned CPTAC3 b46dc866-e674-460f-9ca9-b117c2c51c69 c7d2265d5de116614af81722a5f1e4f6 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor"} -C3N-02944.WGS.T.hg38 C3N-02944 PDA WGS tumor CPT0208690013 d5cd76a3-c43b-448b-8be6-b3456df955f1_wgs_gdc_realn.bam 210051100700 BAM harmonized CPTAC3 6f2cf9e8-d24b-4ca2-92e7-2803c2003519 042a5fd2b450bbe7ad5ffa1c582f284d {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor"} -C3N-02944.WXS.A C3N-02944 PDA WXS tissue_normal CPT0208710007 CPT0208710007.WholeExome.RP-1303.bam 29015644062 BAM aligned CPTAC3 b27f5f6c-de98-4d2e-9c35-f0e5922cd3ce 559fbb1b2ff3a20556ac28640ab40937 {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02944.WXS.A.hg38 C3N-02944 PDA WXS tissue_normal CPT0208710007 860aa962-909c-4eb9-a87c-cb6dde6a20b9_wxs_gdc_realn.bam 40465735151 BAM harmonized CPTAC3 e69fcdc7-a52c-4eee-9966-7dd82ac76ffe 913fcc17c66f69563d69fbf6d974d327 {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02944.WXS.N C3N-02944 PDA WXS blood_normal CPT0208750002 CPT0208750002.WholeExome.RP-1303.bam 27574463278 BAM aligned CPTAC3 40ca2758-f5fa-4fa0-8e2e-330021951af9 c55432e99a4f0f82e91dfae0ec5c953b {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02944.WXS.N.hg38 C3N-02944 PDA WXS blood_normal CPT0208750002 0b0faaf9-f88c-412a-a9b9-6b138aabe624_wxs_gdc_realn.bam 38148185533 BAM harmonized CPTAC3 174062e6-33ad-4b74-92d0-22518321013c 8d72fc888da7bf5e7aa455479e4dcdd9 {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal"} -C3N-02944.WXS.T C3N-02944 PDA WXS tumor CPT0208690013 CPT0208690013.WholeExome.RP-1303.bam 21563334513 BAM aligned CPTAC3 e4997d89-86d5-4b81-9c53-331dfabe7c45 3160d35e75bd90ad481824d5433a0e44 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor"} -C3N-02944.WXS.T.hg38 C3N-02944 PDA WXS tumor CPT0208690013 d5cd76a3-c43b-448b-8be6-b3456df955f1_wxs_gdc_realn.bam 28872868398 BAM harmonized CPTAC3 ea76dae8-7624-4b24-bc45-22eb37e6b7bd ccd53e2ff649c8c3ca46695293246511 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor"} -C3N-02945.MethArray.Green.A C3N-02945 CCRCC Methylation_Array tissue_normal CPT0158980006 204930630081_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 66bf238e-cdfb-431a-9d85-0ac027525fdf a6096aabba05e532550781822363a79d {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.MethArray.Green.T C3N-02945 CCRCC Methylation_Array tumor CPT0158950009 203219670066_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 05b55a47-6471-48b9-a42a-e8ff5d46b5ff 6e113dc714240d440cd5d0c2726c63d8 {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor"} -C3N-02945.MethArray.Red.A C3N-02945 CCRCC Methylation_Array tissue_normal CPT0158980006 204930630081_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 323e77a0-65b0-4554-99bd-6ecf9db44532 83860b0d665022d10b542d72e5e8ac18 {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.MethArray.Red.T C3N-02945 CCRCC Methylation_Array tumor CPT0158950009 203219670066_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 eef52275-3c50-4a10-b221-f4ad83c41397 84b9717c3dab676be2cbde413660eb0a {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor"} -C3N-02945.miRNA-Seq.A.hg38 C3N-02945 CCRCC miRNA-Seq tissue_normal CPT0158980009 a3839eb3-ad79-41ca-9a53-e34937b2f12f_mirnaseq_gdc_realn.bam 227240011 BAM harmonized CPTAC3 06321102-e38e-449e-85da-2fc7f246a397 a8f9c70bea1de77df1d7265ea999ab8e {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.miRNA-Seq.S1_L002_R1.A C3N-02945 CCRCC miRNA-Seq tissue_normal CPT0158980009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L002_R1_001.unaln.bam 209885005 BAM S1_L002_R1 unaligned CPTAC3 974eea39-f759-4b7a-80d7-5d329d5884d6 9e003492f13ec1d9c30e80bcea9e9c33 {"aliquot_tag": "ALQ_1a10a920", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.miRNA-Seq.S43_L005_R1.T C3N-02945 CCRCC miRNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0176_AHYGLVBBXX_TACAGC_S43_L005_R1_001.unaln.bam 261991195 BAM S43_L005_R1 unaligned CPTAC3 4c58ae99-f7ce-4f25-a3e8-4ba6d9bb027e f82b0322080dc2db98a98324c2a14bdf {"aliquot_tag": "ALQ_723f7000", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02945.miRNA-Seq.T.hg38 C3N-02945 CCRCC miRNA-Seq tumor CPT0158950006 0b46c18b-18a8-4aed-9661-a18ca9111d15_mirnaseq_gdc_realn.bam 284176114 BAM harmonized CPTAC3 3c543e8b-2240-4c96-a32b-f4f7196fcd95 6211d5914585ae4fc7d82edf2aa998a6 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor"} -C3N-02945.RNA-Seq.chimeric.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.chimeric.gdc_realn.bam 128323409 BAM chimeric harmonized CPTAC3 a805319c-dbcd-4f68-afee-1d37684bd22e 73b935eb17a864fa531d493c5a393f9b {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.RNA-Seq.chimeric.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.chimeric.gdc_realn.bam 55191554 BAM chimeric harmonized CPTAC3 7c30b84d-41b3-4b7e-bc5d-bcffdfd4fe57 ea16d13a6aabec98d20f1aa5bcd2a440 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor"} -C3N-02945.RNA-Seq.genomic.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.genomic.gdc_realn.bam 8765246942 BAM genomic harmonized CPTAC3 97e22ccc-ce51-4712-9ce3-3968c9663efc f5b66f08d35f233d24e1fb016a3629f6 {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.RNA-Seq.genomic.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.genomic.gdc_realn.bam 8442196812 BAM genomic harmonized CPTAC3 9c841274-2030-46c0-b1eb-d4522a5af289 3ca33fd460fb48f9ef9a6818be9b3bf0 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor"} -C3N-02945.RNA-Seq.S20_L007_R1.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R1_001.fastq.gz 3711664566 FASTQ S20_L007_R1 unaligned CPTAC3 09ed5081-1674-47ea-9135-f4de72596214 5fed27f54c9e912a132955f2f9ef1b45 {"aliquot_tag": "ALQ_1a10a920", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.RNA-Seq.S20_L007_R2.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R2_001.fastq.gz 4051310218 FASTQ S20_L007_R2 unaligned CPTAC3 7db8b6f0-4f4a-483d-a7bb-dd3317582474 1460b4e894a23d2d1d8c7b6639211ca6 {"aliquot_tag": "ALQ_1a10a920", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.RNA-Seq.S21_L006_R1.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4114464795 FASTQ S21_L006_R1 unaligned CPTAC3 2232e9a7-eec5-459e-bacb-7de492449159 8b0664029ffe1db736c02d866a1be1d2 {"aliquot_tag": "ALQ_723f7000", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02945.RNA-Seq.S21_L006_R2.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4198120178 FASTQ S21_L006_R2 unaligned CPTAC3 288b60bc-4549-4319-9761-b001886cc5b6 1468837e70d090c633721b4320a832fe {"aliquot_tag": "ALQ_723f7000", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02945.RNA-Seq.transcriptome.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.transcriptome.gdc_realn.bam 9314084437 BAM transcriptome harmonized CPTAC3 e2c3fa3a-d74e-43a2-b06f-57c9d90d06c4 93303725e4e1f2d171b8179be4100d00 {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.RNA-Seq.transcriptome.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.transcriptome.gdc_realn.bam 11157997564 BAM transcriptome harmonized CPTAC3 45a82623-f3f2-4df5-a654-ead5470c7d37 dddae7d7bd84bddaabced9d76cb1c826 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor"} -C3N-02945.WGS.N C3N-02945 CCRCC WGS blood_normal CPT0159450002 CPT0159450002.WholeGenome.RP-1303.bam 55832259556 BAM aligned CPTAC3 8ac4070d-59e0-4073-8220-132a57aaacc5 fa4dceef400bb9e007d7de5429e2b980 {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02945.WGS.N.hg38 C3N-02945 CCRCC WGS blood_normal CPT0159450002 9f78159f-3ac7-4fb0-8386-48b277ad7a62_wgs_gdc_realn.bam 80830314589 BAM harmonized CPTAC3 55c446e5-fec9-453d-99ba-c651d3a4d102 314a51ce359970c6afce41e7d61d7678 {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02945.WGS.T C3N-02945 CCRCC WGS tumor CPT0158950009 CPT0158950009.WholeGenome.RP-1303.bam 132500056449 BAM aligned CPTAC3 6b1a804d-67e1-4308-8587-baf6a85a61bb a8697be813c988804753681a89d91f3b {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor"} -C3N-02945.WGS.T.hg38 C3N-02945 CCRCC WGS tumor CPT0158950009 10107eda-25f7-413b-94af-f88b2c79de18_wgs_gdc_realn.bam 186689750465 BAM harmonized CPTAC3 965fbb35-092b-48f8-a4a8-2ad896af595f 4f33418303844d46bf82fdd2a18aca3f {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor"} -C3N-02945.WXS.A C3N-02945 CCRCC WXS tissue_normal CPT0158980006 CPT0158980006.WholeExome.RP-1303.bam 24541132244 BAM aligned CPTAC3 58310068-0712-4817-8892-e1eda642e825 48964a799caf44827cc2982c74bf2741 {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.WXS.A.hg38 C3N-02945 CCRCC WXS tissue_normal CPT0158980006 f0bf7c26-d87c-4bc7-846b-1da1572c10dc_wxs_gdc_realn.bam 33791788079 BAM harmonized CPTAC3 b6afdbc3-c35f-45da-9417-664731ca1875 fe3d3bf05e6da8e093ae7209c005bb20 {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02945.WXS.N C3N-02945 CCRCC WXS blood_normal CPT0159450002 CPT0159450002.WholeExome.RP-1303.bam 21871951240 BAM aligned CPTAC3 0f058ee2-7760-46e2-830f-b91c1e520d9f 281078ba3e73eba0a600647d07d0376a {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02945.WXS.N.hg38 C3N-02945 CCRCC WXS blood_normal CPT0159450002 9f78159f-3ac7-4fb0-8386-48b277ad7a62_wxs_gdc_realn.bam 30568171035 BAM harmonized CPTAC3 1851e9f3-d9c1-4593-a5e6-8b59cf6f1c19 b85368e9e55b94251f93640276110f03 {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal"} -C3N-02945.WXS.T C3N-02945 CCRCC WXS tumor CPT0158950009 CPT0158950009.WholeExome.RP-1303.bam 21917122975 BAM aligned CPTAC3 ce791ae1-a103-4421-901e-b957c6db3a9a fa8e7433871e32fa64474d994c6ebdee {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor"} -C3N-02945.WXS.T.hg38 C3N-02945 CCRCC WXS tumor CPT0158950009 10107eda-25f7-413b-94af-f88b2c79de18_wxs_gdc_realn.bam 29953488572 BAM harmonized CPTAC3 5f7ef2cb-3738-44fc-a1a3-f8ae9ae2c757 318abde0cc6dd9ca5325faccb9f56cfc {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor"} -C3N-02947.MethArray.Green.T C3N-02947 UCEC Methylation_Array tumor CPT0158520011 203561450018_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 41c77ca8-0661-4ab0-98fc-38cd16613351 5077871ee80920a0bc1cb9d9e73c8bba {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor"} -C3N-02947.MethArray.Red.T C3N-02947 UCEC Methylation_Array tumor CPT0158520011 203561450018_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 78626fe4-5ebb-436b-b1c4-3fb9abb9fc9d 2720a8650970bae3c007b856f5aa4c39 {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor"} -C3N-02947.miRNA-Seq.S16_L003_R1.T C3N-02947 UCEC miRNA-Seq tumor CPT0158520014 190508_UNC31-K00269_0215_BH7FYKBBXY_CCGTCC_S16_L003_R1_001.unaln.bam 191975960 BAM S16_L003_R1 unaligned CPTAC3 cdb5ba2d-55f8-4d52-a3e4-6578e7a5a682 5b3a7fc1347aa30921871fe9ce465217 {"aliquot_tag": "ALQ_40c83c06", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02947.miRNA-Seq.T.hg38 C3N-02947 UCEC miRNA-Seq tumor CPT0158520014 ca87a91d-325c-4a89-b284-27b977337fbc_mirnaseq_gdc_realn.bam 216797226 BAM harmonized CPTAC3 2e1d0e96-2465-48b3-8bdb-f51b8fb5da81 c804bf5e7e6052b8a2d3c24983a2bf0f {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.chimeric.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.chimeric.gdc_realn.bam 34785528 BAM chimeric harmonized CPTAC3 2babc294-03fd-4ca2-9109-2f66f637c24e 7478278162add236b66f226b1101357a {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.chimeric.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.chimeric.gdc_realn.bam 179911515 BAM chimeric harmonized CPTAC3 1dd35833-9fd1-4f7a-b263-dcd7e1d1d4c3 3966cf27a0021c5469333f846cd33306 {"aliquot_tag": "ALQ_e15976b8", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.genomic.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.genomic.gdc_realn.bam 8705116109 BAM genomic harmonized CPTAC3 dd5f0fa8-db2f-460e-b3b2-cf8dbbb493ba af1e90b16c734c3cdb673b79f3229b59 {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.genomic.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.genomic.gdc_realn.bam 8845754724 BAM genomic harmonized CPTAC3 e029bf40-4884-4c21-ad59-1ee267ca0a0b f8ef3fc560206a44ba9995422c0a1a98 {"aliquot_tag": "ALQ_e15976b8", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.S28_L007_R1.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R1_001.fastq.gz 3929759241 FASTQ S28_L007_R1 unaligned CPTAC3 d7344ab8-5fc2-4c8c-9d05-d8282f22d3f7 2f353e0faf93274cc1260bf1eadbf704 {"aliquot_tag": "ALQ_40c83c06", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.S28_L007_R2.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R2_001.fastq.gz 4540201390 FASTQ S28_L007_R2 unaligned CPTAC3 6d5aed0d-d8ed-4b7c-8dfe-df4805167f6d 48b3fcadc8abeb67baaf192ce6dd3581 {"aliquot_tag": "ALQ_40c83c06", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.S46_R1.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R1_001.fastq.gz 6142656648 FASTQ S46_R1 unaligned CPTAC3 b6ae4b9c-1dbf-4a5b-a998-b75a2722b338 595fe13215317ac2804879da6ac375d5 {"aliquot_tag": "ALQ_e15976b8", "sample": "S46", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.S46_R2.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R2_001.fastq.gz 6391118314 FASTQ S46_R2 unaligned CPTAC3 def1649a-845a-4a01-90a4-ef9d55653ab2 1e6d500173112ea6ab05eee95cc4a8f2 {"aliquot_tag": "ALQ_e15976b8", "sample": "S46", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.transcriptome.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.transcriptome.gdc_realn.bam 11554955482 BAM transcriptome harmonized CPTAC3 b9f8f644-bb79-4480-b724-8bdda804ebe4 9957b28a7d0130024b3576858bc81458 {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor"} -C3N-02947.RNA-Seq.transcriptome.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.transcriptome.gdc_realn.bam 7062899798 BAM transcriptome harmonized CPTAC3 d33c4f77-8f04-4e7e-8cf2-12e615f62610 01a60f708c6fa8d010609bbe9a78bb99 {"aliquot_tag": "ALQ_e15976b8", "gdc_sample_type": "Primary Tumor"} -C3N-02947.WGS.N C3N-02947 UCEC WGS blood_normal CPT0159460002 CPT0159460002.WholeGenome.RP-1303.bam 66925906042 BAM aligned CPTAC3 466f6cf0-f37b-4601-a9f4-309b3c68a1f1 5d81f5666d7ba04daaabb226aa2c19db {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02947.WGS.N.hg38 C3N-02947 UCEC WGS blood_normal CPT0159460002 e084a54c-56f3-4760-b98f-16f0b6e7f209_wgs_gdc_realn.bam 97428746518 BAM harmonized CPTAC3 2bcabd4e-2788-4643-9ca4-2250d1d01756 3b922e0fd033048187a72468c1efe9f6 {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02947.WGS.T C3N-02947 UCEC WGS tumor CPT0158520011 CPT0158520011.WholeGenome.RP-1303.bam 54502609402 BAM aligned CPTAC3 74578276-4c6e-45ec-8724-c8981d7daec2 9c8e0271aa9ebeea6df90459663b8ad6 {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor"} -C3N-02947.WGS.T.hg38 C3N-02947 UCEC WGS tumor CPT0158520011 917f51a7-7b1e-45aa-9866-b67c15b7d4f9_wgs_gdc_realn.bam 78760121044 BAM harmonized CPTAC3 252e26bf-c072-4802-9a10-c89e2f0d88c4 6884d1c3e57c8989b30c1a9dd22a4beb {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor"} -C3N-02947.WXS.N C3N-02947 UCEC WXS blood_normal CPT0159460002 CPT0159460002.WholeExome.RP-1303.bam 27789945096 BAM aligned CPTAC3 c461758a-6b4d-429d-af7e-90ecfd1997b2 e48ea648cdc7d3bcef89854eac402ca1 {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02947.WXS.N.hg38 C3N-02947 UCEC WXS blood_normal CPT0159460002 e084a54c-56f3-4760-b98f-16f0b6e7f209_wxs_gdc_realn.bam 37801084527 BAM harmonized CPTAC3 d386ddd9-c1bb-4c4b-b2f1-2c1b7213070c e15b27e8c1ac60e17c550bf5e8fa44bd {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal"} -C3N-02947.WXS.T C3N-02947 UCEC WXS tumor CPT0158520011 CPT0158520011.WholeExome.RP-1303.bam 19552895922 BAM aligned CPTAC3 b34338a4-8213-4172-ba1b-8811b5ba5f7a 2370d7fb4139139d8c7cc2ba21b5be46 {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor"} -C3N-02947.WXS.T.hg38 C3N-02947 UCEC WXS tumor CPT0158520011 917f51a7-7b1e-45aa-9866-b67c15b7d4f9_wxs_gdc_realn.bam 27954844703 BAM harmonized CPTAC3 ce628685-3f7c-4c59-b124-1fe68e685915 69a7d97731c001d7786812412002a6ca {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor"} -C3N-02948.MethArray.Green.A C3N-02948 LUAD Methylation_Array tissue_normal CPT0185650006 203561450099_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6be9232c-c363-4019-9976-6331a970dab0 ff7c576f5f6e5eab5608428f8d61a997 {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.MethArray.Green.T C3N-02948 LUAD Methylation_Array tumor CPT0185620007 203273630261_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bf6ebf85-a4d3-4f41-8af7-121d56910829 9857846be201c5d9c6b634a0957feb6c {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor"} -C3N-02948.MethArray.Red.A C3N-02948 LUAD Methylation_Array tissue_normal CPT0185650006 203561450099_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 e53213a2-34fc-4f68-816c-f77cb941677b 1e56aa1d8326307de7195b35084b9082 {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.MethArray.Red.T C3N-02948 LUAD Methylation_Array tumor CPT0185620007 203273630261_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3a18ec0d-6880-4ea3-8ef5-19559cd8f59d 09c2d1ace5a96103dd8c0661990f51e7 {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor"} -C3N-02948.miRNA-Seq.A.hg38 C3N-02948 LUAD miRNA-Seq tissue_normal CPT0185650009 0f175fc8-3935-47ee-a6e4-7fadf7ea340f_mirnaseq_gdc_realn.bam 258577939 BAM harmonized CPTAC3 93dc8575-e0b5-4964-82af-0ad1de0e24f2 ba3036494fea25f78e245b2de944e646 {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.miRNA-Seq.S22_L004_R1.T C3N-02948 LUAD miRNA-Seq tumor CPT0185620010 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGAGC_S22_L004_R1_001.unaln.bam 189178718 BAM S22_L004_R1 unaligned CPTAC3 9dd09d20-95fe-4ff0-82aa-3415add1ff5c 7450d9b1c6195f93e86790d283cb311b {"aliquot_tag": "ALQ_3be3fea0", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02948.miRNA-Seq.S37_L007_R1.A C3N-02948 LUAD miRNA-Seq tissue_normal CPT0185650009 190712_UNC32-K00270_0192_BH7HL3BBXY_AGTTCC_S37_L007_R1_001.unaln.bam 226649929 BAM S37_L007_R1 unaligned CPTAC3 829fd6d6-a4a5-41c0-b96a-0673cbeb8bfc 1564833ed387655b33ed8732ceadbc8f {"aliquot_tag": "ALQ_e904ab55", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.miRNA-Seq.T.hg38 C3N-02948 LUAD miRNA-Seq tumor CPT0185620010 012f3661-775c-4a28-905e-96ce3f3ac64c_mirnaseq_gdc_realn.bam 207341302 BAM harmonized CPTAC3 3b131dba-2aa1-482e-a179-e9a6b16f9d37 71c1d517c8577c26c05dab95f8fe732f {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor"} -C3N-02948.RNA-Seq.chimeric.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.chimeric.gdc_realn.bam 39129540 BAM chimeric harmonized CPTAC3 85b11dfb-bb4f-42a6-b4af-9c8b62f57293 98d4bde868e841bbfba05c97bfb57419 {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.RNA-Seq.chimeric.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.chimeric.gdc_realn.bam 28269583 BAM chimeric harmonized CPTAC3 edeba805-334a-447a-84b8-b4509814fbd7 ff4914d2a31b5af99d33c5745807e004 {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor"} -C3N-02948.RNA-Seq.genomic.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.genomic.gdc_realn.bam 8086442759 BAM genomic harmonized CPTAC3 cd331c65-65af-42aa-8f45-974b9dfb255b b9c4cf76f07f14634a0fc31e861f759a {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.RNA-Seq.genomic.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.genomic.gdc_realn.bam 12820373986 BAM genomic harmonized CPTAC3 f4e913fb-010a-4c45-9ce3-5501c5e9ba62 c640623623b2c8c885f42f39d7ab3505 {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor"} -C3N-02948.RNA-Seq.S17_L005_R1.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R1_001.fastq.gz 3551294006 FASTQ S17_L005_R1 unaligned CPTAC3 b4c4c9e6-b65a-49a2-abb1-4d5a9ef3b75b aaf9b6579fc9842609184ba9f45c8328 {"aliquot_tag": "ALQ_e904ab55", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.RNA-Seq.S17_L005_R2.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R2_001.fastq.gz 3659272092 FASTQ S17_L005_R2 unaligned CPTAC3 87028c31-f91a-441a-afe7-076d22314769 8287659f04cda706fafcafc66a4c2dc0 {"aliquot_tag": "ALQ_e904ab55", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.RNA-Seq.S30_L008_R1.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R1_001.fastq.gz 3708317803 FASTQ S30_L008_R1 unaligned CPTAC3 c7c365e2-62a5-4ecb-9082-98ba487225c8 5888717a88a647878fb532f7ea585f82 {"aliquot_tag": "ALQ_3be3fea0", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02948.RNA-Seq.S30_L008_R2.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R2_001.fastq.gz 4185413458 FASTQ S30_L008_R2 unaligned CPTAC3 25ab23a6-374d-4668-ae34-3f02353df9fd 7581a1d7c5475d57dbc6bb0513ea0ce6 {"aliquot_tag": "ALQ_3be3fea0", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02948.RNA-Seq.transcriptome.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.transcriptome.gdc_realn.bam 8337560232 BAM transcriptome harmonized CPTAC3 3fd1fe80-665c-4e39-9d5d-574be67e2894 eaa01ff88d9e799fe7d8416db8075760 {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.RNA-Seq.transcriptome.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.transcriptome.gdc_realn.bam 9925918868 BAM transcriptome harmonized CPTAC3 c157653f-0309-4032-983a-5a9adc56dd1f 853127664964c7e47468c879f83af3fa {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor"} -C3N-02948.WGS.N C3N-02948 LUAD WGS blood_normal CPT0187250002 CPT0187250002.WholeGenome.RP-1303.bam 77602708506 BAM aligned CPTAC3 d8f328c8-d384-4911-ad97-b27117c08934 10cc204d379c815c9dc2eb06d498aa2f {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02948.WGS.N.hg38 C3N-02948 LUAD WGS blood_normal CPT0187250002 29d5cb91-d838-44d1-a510-7b9838823be1_wgs_gdc_realn.bam 114951738470 BAM harmonized CPTAC3 bdbf85a0-5ba8-4d35-96df-274af98e9288 d4a9b744a394c7ed7617b594f4411e1e {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02948.WGS.T C3N-02948 LUAD WGS tumor CPT0185620007 CPT0185620007.WholeGenome.RP-1303.bam 72818149883 BAM aligned CPTAC3 62407993-cd49-4847-b947-63b19d4723ed c67691b6f138fb1918ddb3d35818690e {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor"} -C3N-02948.WGS.T.hg38 C3N-02948 LUAD WGS tumor CPT0185620007 4f5e43bf-ba50-4cb8-bc28-e1d7574cb0a0_wgs_gdc_realn.bam 106327473982 BAM harmonized CPTAC3 f6bd1cac-a4b1-4ab5-82e9-012ed5ac8610 e8802b91a0507fdaccccdd4333dbcfcb {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor"} -C3N-02948.WXS.A C3N-02948 LUAD WXS tissue_normal CPT0185650006 CPT0185650006.WholeExome.RP-1303.bam 21542906317 BAM aligned CPTAC3 c5667c5d-688e-4a5c-a85f-9fc70ae16e9b 54ed74e8dc1b32830d25f1b6d394814c {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.WXS.A.hg38 C3N-02948 LUAD WXS tissue_normal CPT0185650006 f178dc69-9def-4816-a759-c9ee959ea265_wxs_gdc_realn.bam 29707899118 BAM harmonized CPTAC3 39f1d507-21aa-4c30-9082-5962da48a1c6 449a13591996026fb2154d0b132aa362 {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02948.WXS.N C3N-02948 LUAD WXS blood_normal CPT0187250002 CPT0187250002.WholeExome.RP-1303.bam 27390057352 BAM aligned CPTAC3 220bcec8-2e84-49f6-92aa-661646b915a4 11efa14083c6a6d9986f36b0baeac470 {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02948.WXS.N.hg38 C3N-02948 LUAD WXS blood_normal CPT0187250002 29d5cb91-d838-44d1-a510-7b9838823be1_wxs_gdc_realn.bam 37785859118 BAM harmonized CPTAC3 1715b6d5-afb1-4758-858b-36288eb4f8cb e2b32f96a8df9a0c7bb13d519cf5b28a {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02948.WXS.T C3N-02948 LUAD WXS tumor CPT0185620007 CPT0185620007.WholeExome.RP-1303.bam 21211060005 BAM aligned CPTAC3 4a42e5b9-fa25-467d-9fe6-c678753cae52 75c23f1fe5774dab4114566933da44ac {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor"} -C3N-02948.WXS.T.hg38 C3N-02948 LUAD WXS tumor CPT0185620007 4f5e43bf-ba50-4cb8-bc28-e1d7574cb0a0_wxs_gdc_realn.bam 29349818366 BAM harmonized CPTAC3 5d390c6c-0060-47a6-bab7-077f84e8295e c8feb5c202323b752c1a76818412a719 {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor"} -C3N-02950.MethArray.Green.A C3N-02950 LUAD Methylation_Array tissue_normal CPT0240920012 203561450100_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 cae14fc5-75d9-4600-a9cb-e0e6a8998d4c c011ad0e66de62f89915a8d05a0b9cfe {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.MethArray.Green.T C3N-02950 LUAD Methylation_Array tumor CPT0240910006 203561450102_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b10e9dfc-1db3-4de0-bd95-e66e92912a3d c813891241b6b2967c9208360bcb4aff {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor"} -C3N-02950.MethArray.Red.A C3N-02950 LUAD Methylation_Array tissue_normal CPT0240920012 203561450100_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 a9bce004-c87f-46e3-a139-6aea32d0530d 9b5c2301a8f4cb095f253d4e524d5641 {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.MethArray.Red.T C3N-02950 LUAD Methylation_Array tumor CPT0240910006 203561450102_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 598cb0ae-0ab3-4e3b-80eb-d48738ddfe25 ae2907d4e062cec8782b06e63dfc1689 {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor"} -C3N-02950.miRNA-Seq.S39_L004_R1.T C3N-02950 LUAD miRNA-Seq tumor CPT0240910009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGAAG_S39_L004_R1_001.unaln.bam 204816629 BAM S39_L004_R1 unaligned CPTAC3 9625d2b6-b8a6-447d-be9f-ce47d617ed46 39e7a0d3863b3c8c57d9fed1b67a5a00 {"aliquot_tag": "ALQ_d1c8b96d", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02950.miRNA-Seq.T.hg38 C3N-02950 LUAD miRNA-Seq tumor CPT0240910009 d98fa8a5-ce62-4083-b405-8d80d3ca147a_mirnaseq_gdc_realn.bam 224788595 BAM harmonized CPTAC3 c2a58361-0ec2-483e-b7aa-36146c797f2a 1ca92f3662eac999ac5a3daaf1490526 {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor"} -C3N-02950.RNA-Seq.chimeric.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.chimeric.gdc_realn.bam 32207451 BAM chimeric harmonized CPTAC3 d8a53cf6-5837-4595-b457-fda5fe74ea58 85c10b3a3ecc3a4f9c278a833de83e28 {"aliquot_tag": "ALQ_f6af4a58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.RNA-Seq.chimeric.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.chimeric.gdc_realn.bam 26242453 BAM chimeric harmonized CPTAC3 b9d0c188-8e21-47df-a66a-2c32f8613764 a3f635cf96cec739789a95c8753ee384 {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor"} -C3N-02950.RNA-Seq.genomic.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.genomic.gdc_realn.bam 7147464534 BAM genomic harmonized CPTAC3 7e6e9287-b8af-432e-b929-a342489d8c28 0c441a81745a0bbbe6ed7b5ebd03e436 {"aliquot_tag": "ALQ_f6af4a58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.RNA-Seq.genomic.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.genomic.gdc_realn.bam 9845052013 BAM genomic harmonized CPTAC3 c853fb94-c580-41af-b766-faed4837b3fb 5ac6e37601a4637acd474a51f7b0a5a2 {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor"} -C3N-02950.RNA-Seq.S11_L003_R1.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 3586732550 FASTQ S11_L003_R1 unaligned CPTAC3 4120f0c1-aad8-4dcc-b07a-01587413a44b 0c1476c054b3154708b0bffac2719683 {"aliquot_tag": "ALQ_f6af4a58", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.RNA-Seq.S11_L003_R2.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 3869436944 FASTQ S11_L003_R2 unaligned CPTAC3 c0f6a29e-6657-4040-9001-82372dfa1bd5 d0b96fd58e192525d3006585ebd52e17 {"aliquot_tag": "ALQ_f6af4a58", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.RNA-Seq.S29_L008_R1.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R1_001.fastq.gz 3589057668 FASTQ S29_L008_R1 unaligned CPTAC3 cef32c06-5b93-44f0-9038-42d85d25cac8 bb127bc3b71101bf67ce2a744f44aea7 {"aliquot_tag": "ALQ_d1c8b96d", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02950.RNA-Seq.S29_L008_R2.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R2_001.fastq.gz 4024516872 FASTQ S29_L008_R2 unaligned CPTAC3 595fc7b1-5409-46be-a102-5e430cf7d252 04d851e88aa7863b9f05e50a6ad012c7 {"aliquot_tag": "ALQ_d1c8b96d", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02950.RNA-Seq.transcriptome.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.transcriptome.gdc_realn.bam 8312548627 BAM transcriptome harmonized CPTAC3 703049b8-2c1b-42e1-a0f1-a4ae51fbf9fd 8533404d0eae790418385d2ef9b5ff8d {"aliquot_tag": "ALQ_f6af4a58", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.RNA-Seq.transcriptome.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.transcriptome.gdc_realn.bam 7539983771 BAM transcriptome harmonized CPTAC3 cb8a10e5-27cf-4c78-a43c-235d10345721 14b2a795f28a86eff4ae9b54a846f92a {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor"} -C3N-02950.WGS.N C3N-02950 LUAD WGS blood_normal CPT0241780002 CPT0241780002.WholeGenome.RP-1303.bam 56278523062 BAM aligned CPTAC3 5aeb8f3d-1b34-41e6-bf13-91c9124110a4 0f7321309efff3030fc0052442c44cd5 {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal"} -C3N-02950.WGS.N.hg38 C3N-02950 LUAD WGS blood_normal CPT0241780002 8db3824d-3953-4244-9a56-695278778c6a_wgs_gdc_realn.bam 82136358474 BAM harmonized CPTAC3 337f6981-3213-4d35-9d42-e180cc32d448 1b62fba8bd6f598d8b40e901be10fde9 {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal"} -C3N-02950.WGS.T C3N-02950 LUAD WGS tumor CPT0240910006 CPT0240910006.WholeGenome.RP-1303.bam 72303463868 BAM aligned CPTAC3 e9752a03-7230-4ef0-972d-1c377bcad282 beb1a2dabdb918d1a6686096e978213c {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor"} -C3N-02950.WGS.T.hg38 C3N-02950 LUAD WGS tumor CPT0240910006 27296cd5-a985-4e5f-bc2b-162370b82385_wgs_gdc_realn.bam 106231483332 BAM harmonized CPTAC3 09427d2a-8efa-4204-87c5-9c97900d7f65 644aa1c8610c2832dcfd4813425b298b {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor"} -C3N-02950.WXS.A C3N-02950 LUAD WXS tissue_normal CPT0240920012 CPT0240920012.WholeExome.RP-1303.bam 27547902880 BAM aligned CPTAC3 2fce90d4-bab1-4c31-b7cd-e3f1609b86d4 9526423bd7a76527ef8025d575307b8e {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.WXS.A.hg38 C3N-02950 LUAD WXS tissue_normal CPT0240920012 73d543dd-e982-4e59-b714-70b151d15084_wxs_gdc_realn.bam 37271939045 BAM harmonized CPTAC3 51e3f4ea-e84f-4234-8d29-12bc606ba4de 73b5e777b86274607f3959e749cd34aa {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02950.WXS.N C3N-02950 LUAD WXS blood_normal CPT0241780002 CPT0241780002.WholeExome.RP-1303.bam 29298407947 BAM aligned CPTAC3 60de1d5d-da59-4035-90a4-133550abd754 d1fa2f0625a23b0ac71cec7f7c1c899d {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal"} -C3N-02950.WXS.N.hg38 C3N-02950 LUAD WXS blood_normal CPT0241780002 8db3824d-3953-4244-9a56-695278778c6a_wxs_gdc_realn.bam 40252124171 BAM harmonized CPTAC3 752e7d6c-d010-4603-86aa-f5934f2ee7d5 2ae06faa9c9363aad7886643f38e92d7 {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal"} -C3N-02950.WXS.T C3N-02950 LUAD WXS tumor CPT0240910006 CPT0240910006.WholeExome.RP-1303.bam 22941386633 BAM aligned CPTAC3 f47ca1ad-a7c3-4a7e-97f9-f8d157b05e43 3032bc8cf7b9d887e7695b2c8a31face {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor"} -C3N-02950.WXS.T.hg38 C3N-02950 LUAD WXS tumor CPT0240910006 27296cd5-a985-4e5f-bc2b-162370b82385_wxs_gdc_realn.bam 31738049468 BAM harmonized CPTAC3 c12cae72-7b22-4726-a1b0-500a3f4b8173 9de070f9d2c238847d312ff159c57d70 {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor"} -C3N-02971.MethArray.Green.T C3N-02971 PDA Methylation_Array tumor CPT0185920007 203561450103_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7ac5ed9c-77ab-401d-bfe2-667d07392c83 f4d105336be15b304e4bb4f5866c95b3 {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor"} -C3N-02971.MethArray.Red.T C3N-02971 PDA Methylation_Array tumor CPT0185920007 203561450103_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 6dbc4cfe-f363-4215-84ee-9d4489ae7b55 ded2c024651cb60433fc3a4930d49182 {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor"} -C3N-02971.miRNA-Seq.S23_L006_R1.T C3N-02971 PDA miRNA-Seq tumor CPT0185920010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L006_R1_001.unaln.bam 217059740 BAM S23_L006_R1 unaligned CPTAC3 4540adf0-2dbc-479a-84a9-d6bee606b0f7 4c59831aaa4f5e0c38267b6866f5374b {"aliquot_tag": "ALQ_cab54c75", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02971.miRNA-Seq.T.hg38 C3N-02971 PDA miRNA-Seq tumor CPT0185920010 1712f055-afd7-4a31-bdce-6ea9b55c36a3_mirnaseq_gdc_realn.bam 242812683 BAM harmonized CPTAC3 d94e3bcb-f12d-4b67-b6fd-04765d5c0ef7 6d7c1345998811a2e7569a89195487cd {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor"} -C3N-02971.RNA-Seq.chimeric.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.chimeric.gdc_realn.bam 183418031 BAM chimeric harmonized CPTAC3 b7e0a69d-20b6-44f8-9455-53ff24d66e02 fda5770cc018a3e2583a733338c6ff7e {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor"} -C3N-02971.RNA-Seq.genomic.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.genomic.gdc_realn.bam 10627923723 BAM genomic harmonized CPTAC3 731788f7-224d-463e-9c98-dc39ebc5222e c848697374921a4a27e6bb2789d5f0d7 {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor"} -C3N-02971.RNA-Seq.S7_L002_R1.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R1_001.fastq.gz 4121970006 FASTQ S7_L002_R1 unaligned CPTAC3 f8b3b37d-3f83-4bd1-be99-9f1d32051fd2 280aaf28980c838a861b74d7b371a4ee {"aliquot_tag": "ALQ_cab54c75", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02971.RNA-Seq.S7_L002_R2.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R2_001.fastq.gz 4638710089 FASTQ S7_L002_R2 unaligned CPTAC3 583bf751-7c4c-449e-b192-7216796ab09b 3d6f0e92ef1fef8a12ae758dbcca0d99 {"aliquot_tag": "ALQ_cab54c75", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02971.RNA-Seq.transcriptome.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.transcriptome.gdc_realn.bam 9981291329 BAM transcriptome harmonized CPTAC3 06af9ac7-5b55-4633-b73c-454b038d596a c27b85a1e4d0c2c83c77326ba565e36d {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor"} -C3N-02971.WGS.N C3N-02971 PDA WGS blood_normal CPT0187270002 CPT0187270002.WholeGenome.RP-1303.bam 63316143273 BAM aligned CPTAC3 b52ac77b-1227-4e08-bb8c-9abe69061a43 322650965121f8b62a0574af04c27ebe {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal"} -C3N-02971.WGS.N.hg38 C3N-02971 PDA WGS blood_normal CPT0187270002 fd578434-4744-4277-b26d-75012c4a5918_wgs_gdc_realn.bam 92449047591 BAM harmonized CPTAC3 e79b4170-bdaf-40b0-9ec4-c9253ab925d0 1289704ccfa84deafc12ab108f6e1d6a {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal"} -C3N-02971.WGS.T C3N-02971 PDA WGS tumor CPT0185920007 CPT0185920007.WholeGenome.RP-1303.bam 110060113703 BAM aligned CPTAC3 60e0b149-9e16-47ef-9dcf-47f6efef0128 7032166c750099c4c6a0e80de66451db {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor"} -C3N-02971.WGS.T.hg38 C3N-02971 PDA WGS tumor CPT0185920007 c0cfa53c-5e4a-4142-809a-5961cee26733_wgs_gdc_realn.bam 157644869780 BAM harmonized CPTAC3 d88c905c-d091-4401-994f-56d358caec66 9debb921fc4b1c07b1c3c597a3556a9d {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor"} -C3N-02971.WXS.N C3N-02971 PDA WXS blood_normal CPT0187270002 CPT0187270002.WholeExome.RP-1303.bam 23755912619 BAM aligned CPTAC3 1247ba8a-80ee-44eb-8894-0b566454fa5a 6d10d562d6c193d2dcf32e4fb68e8af2 {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal"} -C3N-02971.WXS.N.hg38 C3N-02971 PDA WXS blood_normal CPT0187270002 fd578434-4744-4277-b26d-75012c4a5918_wxs_gdc_realn.bam 32395669877 BAM harmonized CPTAC3 fbc9f5b3-10ca-4ffc-8ffd-2d18c473f98d c0a3e4578687488461225d7f0540eeba {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal"} -C3N-02971.WXS.T C3N-02971 PDA WXS tumor CPT0185920007 CPT0185920007.WholeExome.RP-1303.bam 49566004832 BAM aligned CPTAC3 a6b9e294-b305-4224-a709-1c0f6349d834 e29a86662b5df824927045c76eede3c0 {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor"} -C3N-02971.WXS.T.hg38 C3N-02971 PDA WXS tumor CPT0185920007 c0cfa53c-5e4a-4142-809a-5961cee26733_wxs_gdc_realn.bam 68659877526 BAM harmonized CPTAC3 13c8e243-3b8a-4013-810e-4ec75e6ae351 3172a1db90edb5b1b184a94532d56f4e {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor"} -C3N-02972.MethArray.Green.T C3N-02972 UCEC Methylation_Array tumor CPT0159220011 203561450103_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8b91a199-948f-4a7b-8b3f-63ddeee0af6c 0f6baff8d45ab14901ea8ec977669e49 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor"} -C3N-02972.MethArray.Red.T C3N-02972 UCEC Methylation_Array tumor CPT0159220011 203561450103_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b12d4fb2-a33a-4d60-bac2-e01a6320a06a 895227438e0c264353ab8ab53d933109 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor"} -C3N-02972.miRNA-Seq.S1_L001_R1.T C3N-02972 UCEC miRNA-Seq tumor CPT0159220014 190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L001_R1_001.unaln.bam 251959666 BAM S1_L001_R1 unaligned CPTAC3 6cd96684-43e2-4ca2-be89-763fa9e955a6 37040a1be8073bfe74d47362e8d0585c {"aliquot_tag": "ALQ_fbba070a", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02972.miRNA-Seq.T.hg38 C3N-02972 UCEC miRNA-Seq tumor CPT0159220014 ab03df7e-c232-4c3b-8e33-9730a40d6c45_mirnaseq_gdc_realn.bam 282997263 BAM harmonized CPTAC3 abd52b5b-f5fa-40fb-9387-dca8a0a9cf9c 64d08b4ac4b4b076269d5fbec467e328 {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.chimeric.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.chimeric.gdc_realn.bam 39563596 BAM chimeric harmonized CPTAC3 8447a6e8-a260-4bc0-8020-15340754048d 9057549d476f1840c19de11c322e163d {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.chimeric.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.chimeric.gdc_realn.bam 15282155 BAM chimeric harmonized CPTAC3 1e412579-4463-4c42-bd4e-7f8620ed273e ca42c311d2e745b7fb3c9448f59e28d3 {"aliquot_tag": "ALQ_5a2b4db4", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.genomic.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.genomic.gdc_realn.bam 9043830734 BAM genomic harmonized CPTAC3 c9dfd1cd-2d91-48bb-a73e-9a6b964cbe4e 4447516d14f1b0e8cc5f1c45b33bd2c6 {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.genomic.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.genomic.gdc_realn.bam 4850090298 BAM genomic harmonized CPTAC3 b25cac48-7bf7-4d5b-9a6f-be0ddb185fbe 76825c7ddc4455fe3b9767f32ad0c562 {"aliquot_tag": "ALQ_5a2b4db4", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.S11_L004_R1.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R1_001.fastq.gz 4357805183 FASTQ S11_L004_R1 unaligned CPTAC3 3c0284c8-93df-4718-a80f-0a9d7beb2895 79771fbfad83a8c4fa8b4b529317a000 {"aliquot_tag": "ALQ_fbba070a", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.S11_L004_R2.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R2_001.fastq.gz 4900497558 FASTQ S11_L004_R2 unaligned CPTAC3 2da76d66-af60-45f8-8039-9d85d4ffbf85 8996dca99ac09d3ffc8d91ba64850938 {"aliquot_tag": "ALQ_fbba070a", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.S8_R1.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R1_001.fastq.gz 2734251106 FASTQ S8_R1 unaligned CPTAC3 9dfac3d7-41d7-495b-9ca5-11e7f7593ad1 9af06822fa5cb43c4f307f11b3c5667b {"aliquot_tag": "ALQ_5a2b4db4", "sample": "S8", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.S8_R2.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R2_001.fastq.gz 2992165707 FASTQ S8_R2 unaligned CPTAC3 01d552fa-f768-4c0b-b91d-77d2c82cc5c8 0ff50325c74804f5b8cc12b2895ca548 {"aliquot_tag": "ALQ_5a2b4db4", "sample": "S8", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.transcriptome.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.transcriptome.gdc_realn.bam 11846621868 BAM transcriptome harmonized CPTAC3 3d83365e-cfc2-448d-95c7-d9bac62bec16 fd07aff2679d500c76557b032d89e2d9 {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor"} -C3N-02972.RNA-Seq.transcriptome.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.transcriptome.gdc_realn.bam 3959662198 BAM transcriptome harmonized CPTAC3 223ba723-dce6-4bca-97c6-31f01760e7fd 71cc7fb1f20ba0cd98186c78daa2389f {"aliquot_tag": "ALQ_5a2b4db4", "gdc_sample_type": "Primary Tumor"} -C3N-02972.WGS.N C3N-02972 UCEC WGS blood_normal CPT0159480002 CPT0159480002.WholeGenome.RP-1303.bam 60306456058 BAM aligned CPTAC3 49f85e07-8fa5-4cb9-9137-149b57e21c4a 64d6d7084d0b0ac43bb2f3a3c3bf69a1 {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02972.WGS.N.hg38 C3N-02972 UCEC WGS blood_normal CPT0159480002 5d44d14e-6172-48b0-b4a5-963730083704_wgs_gdc_realn.bam 88324870279 BAM harmonized CPTAC3 f54a437c-1ce6-470a-8665-a3b4a5a6c291 eb2b8b24c3af21dc3a37e3b0ab188f1a {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02972.WGS.T C3N-02972 UCEC WGS tumor CPT0159220011 CPT0159220011.WholeGenome.RP-1303.bam 73552112421 BAM aligned CPTAC3 374f5b1e-acaa-4ab9-b834-ce2f9b7cba39 b9c3f0e860f872ecf27d2353e5d1bea6 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor"} -C3N-02972.WGS.T.hg38 C3N-02972 UCEC WGS tumor CPT0159220011 724e0150-c5d9-4b0c-b1b5-3e60ee4bc265_wgs_gdc_realn.bam 107105004028 BAM harmonized CPTAC3 5041f7c7-6b00-4048-aa16-e181701d0747 17ed5171bb5b288a20f4958bbf6d8413 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor"} -C3N-02972.WXS.N C3N-02972 UCEC WXS blood_normal CPT0159480002 CPT0159480002.WholeExome.RP-1303.bam 27329937281 BAM aligned CPTAC3 6e5b07b0-dfb2-4868-a91c-2023479050f9 66a5321b1a99acb94dc1ac6f7c101216 {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02972.WXS.N.hg38 C3N-02972 UCEC WXS blood_normal CPT0159480002 5d44d14e-6172-48b0-b4a5-963730083704_wxs_gdc_realn.bam 37216731955 BAM harmonized CPTAC3 35f5b866-38ef-40ac-9af9-60858b6eab68 9b58f65bc9563f7a854a7b5a2a38e245 {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-02972.WXS.T C3N-02972 UCEC WXS tumor CPT0159220011 CPT0159220011.WholeExome.RP-1303.bam 19134223234 BAM aligned CPTAC3 f0e1108d-df7e-4ac7-ad7d-5da9e5e53aa9 2e1c1a8509b98820c1d0b3d4879d256f {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor"} -C3N-02972.WXS.T.hg38 C3N-02972 UCEC WXS tumor CPT0159220011 724e0150-c5d9-4b0c-b1b5-3e60ee4bc265_wxs_gdc_realn.bam 26851863804 BAM harmonized CPTAC3 367a6783-ba33-432e-8958-cd55857b51b5 b2a3d34c087a419d1c07d4cf1b6b5068 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor"} -C3N-02973.MethArray.Green.A C3N-02973 LUAD Methylation_Array tissue_normal CPT0158830006 203219720176_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8dbca3b0-4103-4e33-8f50-dde5283114ef 4b4052f2b33964c0c754937455c6943b {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.MethArray.Green.T C3N-02973 LUAD Methylation_Array tumor CPT0158800006 203220070102_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ea2ddd02-f7a5-4ff8-a2a5-b7af6565fee6 addf97a86651b75e7bc67e19173ed3c0 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor"} -C3N-02973.MethArray.Red.A C3N-02973 LUAD Methylation_Array tissue_normal CPT0158830006 203219720176_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 cd0b343a-e45c-487d-9225-99b851e9d9e3 735ec4ce5269fc2a087335635acd8652 {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.MethArray.Red.T C3N-02973 LUAD Methylation_Array tumor CPT0158800006 203220070102_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 17f945fd-d50e-46f9-a5cc-97c9bb895c13 dca0291cf6fe71ce9bae5facb494e182 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor"} -C3N-02973.miRNA-Seq.A.hg38 C3N-02973 LUAD miRNA-Seq tissue_normal CPT0158830009 fea59635-fc9b-48dd-a526-2d4e89b5dca2_mirnaseq_gdc_realn.bam 174713434 BAM harmonized CPTAC3 ca500532-98fe-467c-bd8c-055d2bf6650e c149af322bed1e4b83c27c3ee0c3c6a3 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.miRNA-Seq.S10_L008_R1.A C3N-02973 LUAD miRNA-Seq tissue_normal CPT0158830009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L008_R1_001.unaln.bam 154832916 BAM S10_L008_R1 unaligned CPTAC3 4cf12ebf-354f-4e9b-afe8-2d1b44555df1 8e2937f327079b0c6d1646c178f107cb {"aliquot_tag": "ALQ_a69c4b94", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.miRNA-Seq.S41_L007_R1.T C3N-02973 LUAD miRNA-Seq tumor CPT0158800009 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L007_R1_001.unaln.bam 191567294 BAM S41_L007_R1 unaligned CPTAC3 37fb9554-0da8-4110-ba32-39aff2523ae1 0a539a42e42daf6d66bf13bea703c760 {"aliquot_tag": "ALQ_e13c3144", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02973.miRNA-Seq.T.hg38 C3N-02973 LUAD miRNA-Seq tumor CPT0158800009 02d35332-5cb6-4910-b3b7-797585f1bd80_mirnaseq_gdc_realn.bam 211221195 BAM harmonized CPTAC3 7f4a72d1-7609-43d2-87c7-432b6a615b92 09ee7e07279c84bf19f74cf5c93ea0a6 {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor"} -C3N-02973.RNA-Seq.chimeric.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.chimeric.gdc_realn.bam 237879140 BAM chimeric harmonized CPTAC3 8e9e916d-79bd-4876-ad93-63e5071c072e 9dca7d3e880c819036f485bc212aff52 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.RNA-Seq.chimeric.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.chimeric.gdc_realn.bam 55937617 BAM chimeric harmonized CPTAC3 9df532b3-6283-46ad-97b0-6cafb83b9840 793633ea82c1d2ecef3ed1c58857f2ea {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor"} -C3N-02973.RNA-Seq.genomic.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.genomic.gdc_realn.bam 6559969052 BAM genomic harmonized CPTAC3 63c2b415-9b7c-4d24-bee2-18e044f6e3fe efd87186c942390d28310f54afe41774 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.RNA-Seq.genomic.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.genomic.gdc_realn.bam 10834040745 BAM genomic harmonized CPTAC3 1883ceb5-dba8-4fe3-acac-d3cd60000694 66d7d82944e70cbd6615aea50cf724a6 {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor"} -C3N-02973.RNA-Seq.S16_L004_R1.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R1_001.fastq.gz 4812354130 FASTQ S16_L004_R1 unaligned CPTAC3 b17cc448-3b71-4cc4-aa47-d20cad3f7f6b a9e92ea194b75e42cc8f9e4b937cf1e5 {"aliquot_tag": "ALQ_e13c3144", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02973.RNA-Seq.S16_L004_R2.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R2_001.fastq.gz 5409184919 FASTQ S16_L004_R2 unaligned CPTAC3 fc89f663-b4ea-407d-8eef-502ce491751f 1c0748e7677b5e2e864f27cfd4e46806 {"aliquot_tag": "ALQ_e13c3144", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02973.RNA-Seq.S3_L004_R1.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R1_001.fastq.gz 2757636572 FASTQ S3_L004_R1 unaligned CPTAC3 f48b615f-ea3c-4346-af45-f59438d6dd33 c2d30faa852dc0814ae34388ef25eedd {"aliquot_tag": "ALQ_a69c4b94", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.RNA-Seq.S3_L004_R2.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R2_001.fastq.gz 2988808092 FASTQ S3_L004_R2 unaligned CPTAC3 15a908e8-10e4-4e68-bb6d-549d3ffc8419 c4ba0b2561c13764eebde3ff033d9e4c {"aliquot_tag": "ALQ_a69c4b94", "sample": "S3", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.RNA-Seq.transcriptome.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.transcriptome.gdc_realn.bam 6877571131 BAM transcriptome harmonized CPTAC3 a1cf8e21-b8d6-4d33-9215-625147f71549 29cdd7d1a5f576a0d7feffadc2f09d35 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.RNA-Seq.transcriptome.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.transcriptome.gdc_realn.bam 10499744693 BAM transcriptome harmonized CPTAC3 de4fd987-5ca5-4de2-87aa-2907e4b8f368 05ec2391c1f4afcd41a9cf0c3f026067 {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor"} -C3N-02973.WGS.N C3N-02973 LUAD WGS blood_normal CPT0159500002 CPT0159500002.WholeGenome.RP-1303.bam 54057109946 BAM aligned CPTAC3 ecf6c674-5e47-483f-b22e-f98966358e14 602e30b18208c617abc3f9f1d44e72ac {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02973.WGS.N.hg38 C3N-02973 LUAD WGS blood_normal CPT0159500002 9ad39505-46ad-4e09-b88a-b18441670098_wgs_gdc_realn.bam 78887793882 BAM harmonized CPTAC3 16699946-b149-4b02-90f5-e09d98ba2ab8 78ffa1923d6317dfbd2dd9a21e6275ae {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02973.WGS.T C3N-02973 LUAD WGS tumor CPT0158800006 CPT0158800006.WholeGenome.RP-1303.bam 121515535084 BAM aligned CPTAC3 e2c2f136-0a33-4533-913a-c931231e6680 99e202c36e843f101d6896cefbeed1e6 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor"} -C3N-02973.WGS.T.hg38 C3N-02973 LUAD WGS tumor CPT0158800006 7ba6255e-6ab4-40f8-b3a0-944a48972120_wgs_gdc_realn.bam 176910753177 BAM harmonized CPTAC3 7f6676b8-6406-422e-a632-b18929028713 429786d6c041f2f47045365c1275e7c4 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor"} -C3N-02973.WXS.A C3N-02973 LUAD WXS tissue_normal CPT0158830006 CPT0158830006.WholeExome.RP-1303.bam 21354015902 BAM aligned CPTAC3 ab57447e-4330-46a0-a794-b34184b6e6f6 aa9347028e768829f3deca59a54e3eab {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.WXS.A.hg38 C3N-02973 LUAD WXS tissue_normal CPT0158830006 b08b59bd-ba33-4fd0-8e84-9774e86409ed_wxs_gdc_realn.bam 29256740220 BAM harmonized CPTAC3 3c3c166f-5743-4715-a7a3-99555ca19222 65e10be408e412299f47ad8a85973639 {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02973.WXS.N C3N-02973 LUAD WXS blood_normal CPT0159500002 CPT0159500002.WholeExome.RP-1303.bam 23366159210 BAM aligned CPTAC3 030498bd-2ece-41c5-9285-b2e50657ffd1 e5c7c3de872e2f290f682327fc7d48ee {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02973.WXS.N.hg38 C3N-02973 LUAD WXS blood_normal CPT0159500002 9ad39505-46ad-4e09-b88a-b18441670098_wxs_gdc_realn.bam 32624154288 BAM harmonized CPTAC3 f8b28c64-1b73-4b17-8b86-cab8c95c69fc 347896dab5a03293ecdf97fc3103306d {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal"} -C3N-02973.WXS.T C3N-02973 LUAD WXS tumor CPT0158800006 CPT0158800006.WholeExome.RP-1303.bam 21021250094 BAM aligned CPTAC3 be356b9a-e2d2-4369-9aad-3bd97161c9bf 3354027b03b26bedfbfae3d11c7bbe7a {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor"} -C3N-02973.WXS.T.hg38 C3N-02973 LUAD WXS tumor CPT0158800006 7ba6255e-6ab4-40f8-b3a0-944a48972120_wxs_gdc_realn.bam 29708983040 BAM harmonized CPTAC3 dc34c68b-4cf3-4775-9153-9e0d4395d4e5 151b3299ea8168cb2d715462ab06843c {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor"} -C3N-02976.MethArray.Green.T C3N-02976 UCEC Methylation_Array tumor CPT0188030006 203561450048_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 eb9c350c-5031-4d6e-8799-177dfdcee9dd 3eddf0173c529803a3b5411cdc680a3f {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor"} -C3N-02976.MethArray.Red.T C3N-02976 UCEC Methylation_Array tumor CPT0188030006 203561450048_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 c8fefe7e-4008-4f88-bea6-8208df89178e 1b934544676aba2717f16b49f67e44db {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.chimeric.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.chimeric.gdc_realn.bam 38813532 BAM chimeric harmonized CPTAC3 5fbffeb4-4b0b-4c22-b964-37e0d3dc9977 3e9dc1931d862150d21d2c54a187f843 {"aliquot_tag": "ALQ_d1cadc28", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.chimeric.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.chimeric.gdc_realn.bam 436249706 BAM chimeric harmonized CPTAC3 67598aea-9575-4163-87a0-b007fa9a987a c42b95b9fceb2e534c8adea97d20a448 {"aliquot_tag": "ALQ_7c348a01", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.genomic.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.genomic.gdc_realn.bam 9604229848 BAM genomic harmonized CPTAC3 af117790-256b-43f3-bb98-a250d0c97119 a586f5de20b55de484f2eda8b2ac6d40 {"aliquot_tag": "ALQ_d1cadc28", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.genomic.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.genomic.gdc_realn.bam 20409457367 BAM genomic harmonized CPTAC3 0ad318d9-d110-4419-b9ab-ae4fa7ae3b54 7a70e57857c649e1a44bd9b73ab83544 {"aliquot_tag": "ALQ_7c348a01", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.S17_L005_R1.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R1_001.fastq.gz 4562895528 FASTQ S17_L005_R1 unaligned CPTAC3 cd351f85-c471-4600-b1bf-c498f24a1528 74a16eaeb3aa01fc980d55be6fde923e {"aliquot_tag": "ALQ_d1cadc28", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.S17_L005_R2.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R2_001.fastq.gz 5066100927 FASTQ S17_L005_R2 unaligned CPTAC3 9b7999a6-39fe-4bd6-9ae0-99bb2ba7f7a7 a9749508f457d7d92e46f1d3953c7fe5 {"aliquot_tag": "ALQ_d1cadc28", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.S78_R1.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R1_001.fastq.gz 13891695391 FASTQ S78_R1 unaligned CPTAC3 e5206777-7329-4404-88bd-b482451fd621 3d82c30d7143c78a61db29ac33555220 {"aliquot_tag": "ALQ_7c348a01", "sample": "S78", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.S78_R2.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R2_001.fastq.gz 14324623373 FASTQ S78_R2 unaligned CPTAC3 ed50c687-62c5-428a-89e2-6e9a516c6792 8e9ded5d7c5f87ccb4b4d3359aafb72b {"aliquot_tag": "ALQ_7c348a01", "sample": "S78", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.transcriptome.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.transcriptome.gdc_realn.bam 12116338912 BAM transcriptome harmonized CPTAC3 b02f331a-35b8-4983-bb12-d00b703fcda7 3b09438e82a0a0eebc0b9cb364d74b28 {"aliquot_tag": "ALQ_d1cadc28", "gdc_sample_type": "Primary Tumor"} -C3N-02976.RNA-Seq.transcriptome.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.transcriptome.gdc_realn.bam 10735699493 BAM transcriptome harmonized CPTAC3 ad832e7c-a6fa-41db-ab3d-c0d98e22fb08 e74f08ad452bd7807276e93c989a8616 {"aliquot_tag": "ALQ_7c348a01", "gdc_sample_type": "Primary Tumor"} -C3N-02976.WGS.N C3N-02976 UCEC WGS blood_normal CPT0188090002 CPT0188090002.WholeGenome.RP-1303.bam 63445121214 BAM aligned CPTAC3 da4f69b4-2f83-4d92-bff5-485b9758795e 82a124cf6eb6ab54a44e2996ba577cfa {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal"} -C3N-02976.WGS.N.hg38 C3N-02976 UCEC WGS blood_normal CPT0188090002 ac5b4160-c621-4774-9c85-773ea9a3cfb7_wgs_gdc_realn.bam 91032302379 BAM harmonized CPTAC3 323bdba9-d5dc-4645-a411-a89b97662c8c 9e31f353ade4ad35cef2cb63b5f32ba5 {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal"} -C3N-02976.WGS.T C3N-02976 UCEC WGS tumor CPT0188030006 CPT0188030006.WholeGenome.RP-1303.bam 104793850021 BAM aligned CPTAC3 253723ca-dd15-4062-b3a0-e7a521a7d566 2f8f76c4c2da8302e271e27076929a61 {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor"} -C3N-02976.WGS.T.hg38 C3N-02976 UCEC WGS tumor CPT0188030006 7d4f6083-ea93-49eb-b8dc-e359158f919c_wgs_gdc_realn.bam 152494972084 BAM harmonized CPTAC3 e284a0c5-32eb-45d9-a97b-399568005a01 f6ac9eb7f353a7c32769937a7e34620d {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor"} -C3N-02976.WXS.N C3N-02976 UCEC WXS blood_normal CPT0188090002 CPT0188090002.WholeExome.RP-1303.bam 25027889700 BAM aligned CPTAC3 c7f11560-5c5a-4251-9fa3-ab68c913325d 59fec43ec0a65241343b732319d6b98f {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal"} -C3N-02976.WXS.N.hg38 C3N-02976 UCEC WXS blood_normal CPT0188090002 ac5b4160-c621-4774-9c85-773ea9a3cfb7_wxs_gdc_realn.bam 34297867321 BAM harmonized CPTAC3 bf798a9f-d0c6-4a06-b36c-f6ff866eb7a1 0c069c7206eac12e59363393197d73f8 {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal"} -C3N-02976.WXS.T C3N-02976 UCEC WXS tumor CPT0188030006 CPT0188030006.WholeExome.RP-1303.bam 28605305878 BAM aligned CPTAC3 88b0acd7-b2d8-412d-b62b-65c953bc10f4 1b39e0c1b6625d0f3512279b01221500 {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor"} -C3N-02976.WXS.T.hg38 C3N-02976 UCEC WXS tumor CPT0188030006 7d4f6083-ea93-49eb-b8dc-e359158f919c_wxs_gdc_realn.bam 39394696639 BAM harmonized CPTAC3 73da2d7f-d93f-439f-8227-e33889edef76 b4b329bbc2d116d17d3e26927e87bb3d {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor"} -C3N-02978.MethArray.Green.T C3N-02978 UCEC Methylation_Array tumor CPT0244470006 203561450041_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 df9ee8fc-471c-4cb2-b979-0c3ed41c9ad3 68be30fe4639627b2b012de11ecc2f2c {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor"} -C3N-02978.MethArray.Red.T C3N-02978 UCEC Methylation_Array tumor CPT0244470006 203561450041_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 d17a1a35-c55f-422c-9304-eaacc1073906 0c485e4d575aebc86362dedc6851ac64 {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor"} -C3N-02978.miRNA-Seq.S3_L001_R1.T C3N-02978 UCEC miRNA-Seq tumor CPT0244470009 190508_UNC31-K00269_0215_BH7FYKBBXY_TTAGGC_S3_L001_R1_001.unaln.bam 206913870 BAM S3_L001_R1 unaligned CPTAC3 46a40edd-b9c9-46e3-8bbe-206a76693869 425206dfe7722c7e177d0c07a9276131 {"aliquot_tag": "ALQ_16597b00", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02978.miRNA-Seq.T.hg38 C3N-02978 UCEC miRNA-Seq tumor CPT0244470009 04bd8ab7-4b40-44b5-a699-c3b02768a528_mirnaseq_gdc_realn.bam 236421336 BAM harmonized CPTAC3 41503d04-661c-4940-8cda-3af73738a994 3488a35bf4b965e9be2822e132257e88 {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.chimeric.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.chimeric.gdc_realn.bam 27223633 BAM chimeric harmonized CPTAC3 64e93287-a219-4158-8f1e-825e696af4bf 4dc245d41793a8ce3bff386c854967f0 {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.chimeric.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.chimeric.gdc_realn.bam 231891398 BAM chimeric harmonized CPTAC3 8d6bd61e-25af-41a1-8252-217a1d3cc2eb 066e2b7f67a34414737ece2bcbb89af2 {"aliquot_tag": "ALQ_84a44eb0", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.genomic.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.genomic.gdc_realn.bam 7403973356 BAM genomic harmonized CPTAC3 490446b7-81d8-4b1e-bf7a-5ffd2e575072 84c1caa13965e3a7e1b90f351dda591f {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.genomic.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.genomic.gdc_realn.bam 11128514756 BAM genomic harmonized CPTAC3 49f6af4d-dbcb-4677-8f8c-3da559f063cb 5a14865d0e07a9e8a8a8cc2133183f0d {"aliquot_tag": "ALQ_84a44eb0", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.S13_L004_R1.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R1_001.fastq.gz 3552227283 FASTQ S13_L004_R1 unaligned CPTAC3 a94dd2fe-40de-47bb-a980-49aaa4d2d3b6 855472d39d21e686b742418a4dbaa85c {"aliquot_tag": "ALQ_16597b00", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.S13_L004_R2.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R2_001.fastq.gz 3992956567 FASTQ S13_L004_R2 unaligned CPTAC3 2041c9b6-0641-48f1-8fc5-1e594031e2d8 c1c1caa3c060ae3a04146d3e0573e3fa {"aliquot_tag": "ALQ_16597b00", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.S79_R1.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R1_001.fastq.gz 6920812759 FASTQ S79_R1 unaligned CPTAC3 06316754-64be-4277-a073-6f830c61e9c6 7a3a8d34e45f8a2de1b723f468449625 {"aliquot_tag": "ALQ_84a44eb0", "sample": "S79", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.S79_R2.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R2_001.fastq.gz 7160560179 FASTQ S79_R2 unaligned CPTAC3 c20409fc-f0e4-47f7-8a8f-55600a2047b9 544de996c2172be767c77dbea346c15b {"aliquot_tag": "ALQ_84a44eb0", "sample": "S79", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.transcriptome.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.transcriptome.gdc_realn.bam 12047110662 BAM transcriptome harmonized CPTAC3 b173d6a1-f012-4c9e-a6cd-efd821714e87 e3a9cf1fa303de1e2c0a881320c56edb {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor"} -C3N-02978.RNA-Seq.transcriptome.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.transcriptome.gdc_realn.bam 5239012890 BAM transcriptome harmonized CPTAC3 e3e92b94-430f-40a0-b6bd-adf4b6b6bbee f3e172a47267a55c6444ef0ce521d024 {"aliquot_tag": "ALQ_84a44eb0", "gdc_sample_type": "Primary Tumor"} -C3N-02978.WGS.N C3N-02978 UCEC WGS blood_normal CPT0244490002 CPT0244490002.WholeGenome.RP-1303.bam 69114889782 BAM aligned CPTAC3 33c9d10d-90c2-4cae-8a5b-b13cf5127ea0 f2325c4bfcf0a9417fa282982e066f5b {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02978.WGS.N.hg38 C3N-02978 UCEC WGS blood_normal CPT0244490002 c4fa174e-cde5-4659-9d2e-58ed1b380327_wgs_gdc_realn.bam 100831158639 BAM harmonized CPTAC3 daa49700-ac1a-42a5-914f-a8e933761ad8 2581293bf8ddf90b539e5d5a3c01a98b {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02978.WGS.T C3N-02978 UCEC WGS tumor CPT0244470006 CPT0244470006.WholeGenome.RP-1303.bam 85381652373 BAM aligned CPTAC3 4e289fa4-d13f-41d7-b689-d7f6b9b17b57 4f1245af06136fe98da669781638a3ce {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor"} -C3N-02978.WGS.T.hg38 C3N-02978 UCEC WGS tumor CPT0244470006 03188417-8c41-4b96-9fc3-e1676616de60_wgs_gdc_realn.bam 124444262000 BAM harmonized CPTAC3 4378a679-3aad-467e-af8b-9f299ed4e9d1 9a5c76ceebd7d4e91c999f6e6670fcca {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor"} -C3N-02978.WXS.N C3N-02978 UCEC WXS blood_normal CPT0244490002 CPT0244490002.WholeExome.RP-1303.bam 23327342019 BAM aligned CPTAC3 4ddb1c17-3dff-4855-a508-1c65f2c0d3b8 39f7cec489f7f9fd2fa714c0ef1dcf61 {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02978.WXS.N.hg38 C3N-02978 UCEC WXS blood_normal CPT0244490002 c4fa174e-cde5-4659-9d2e-58ed1b380327_wxs_gdc_realn.bam 32388949556 BAM harmonized CPTAC3 8099e860-6b09-4b7c-905e-c1075febecba d79283dd3e5d6402f3a7ac61facd3d51 {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal"} -C3N-02978.WXS.T C3N-02978 UCEC WXS tumor CPT0244470006 CPT0244470006.WholeExome.RP-1303.bam 26626547690 BAM aligned CPTAC3 758be895-c501-4473-8e20-c88e7f7b8648 6c2d8efdc801b84bad9e2c813ae5ddb0 {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor"} -C3N-02978.WXS.T.hg38 C3N-02978 UCEC WXS tumor CPT0244470006 03188417-8c41-4b96-9fc3-e1676616de60_wxs_gdc_realn.bam 36857640373 BAM harmonized CPTAC3 b2cd9ea6-4244-4dd9-9bed-e44a8b17a060 c0530aacc06f2d5b41887a2355555280 {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor"} -C3N-02979.MethArray.Green.T C3N-02979 UCEC Methylation_Array tumor CPT0188100007 203561620050_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c918f139-1c73-44bc-b245-f03c5bd8c3c3 cde6a5dd7cbd811f34b2ef7ab59947aa {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor"} -C3N-02979.MethArray.Red.T C3N-02979 UCEC Methylation_Array tumor CPT0188100007 203561620050_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 66171c33-a6a1-44e2-8e30-b5da7fd21527 168e884c4be593b2d7aa5ff3e439371e {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor"} -C3N-02979.miRNA-Seq.S21_L003_R1.T C3N-02979 UCEC miRNA-Seq tumor CPT0188100010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 129258275 BAM S21_L003_R1 unaligned CPTAC3 4d5892d2-6e87-43c3-b97d-83aed7d481c0 d59d1a751f6e41b3fd77822964dae1ac {"aliquot_tag": "ALQ_3df1fcb8", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02979.miRNA-Seq.T.hg38 C3N-02979 UCEC miRNA-Seq tumor CPT0188100010 108f2af1-af04-4d55-9877-853c7e0c0fb2_mirnaseq_gdc_realn.bam 146879714 BAM harmonized CPTAC3 8930c62f-a0ef-44fb-b9d1-de2ea0358cd8 c0ba73ffff97897bbbce5a1db053519f {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.chimeric.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.chimeric.gdc_realn.bam 45062566 BAM chimeric harmonized CPTAC3 49e93a4c-f568-4022-a380-a8c8cb723ac4 4bf8f6f5afff92f60e51b15a5fd43a59 {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.chimeric.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.chimeric.gdc_realn.bam 178821108 BAM chimeric harmonized CPTAC3 4b0475cb-43c2-4bb6-8c3b-1272ccc9121b b3471f9e295df692d0cae8a55baf6cd2 {"aliquot_tag": "ALQ_b9c46700", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.genomic.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.genomic.gdc_realn.bam 7892799825 BAM genomic harmonized CPTAC3 95eb998f-f540-479f-bfd7-750a837aed69 1cf9673d7c6181f5443e443245a7e5d1 {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.genomic.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.genomic.gdc_realn.bam 8599731049 BAM genomic harmonized CPTAC3 d0062090-8620-485b-8cec-70059ccd650e 7ca7b4ea004b7876ced6098bddd71b42 {"aliquot_tag": "ALQ_b9c46700", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.S19_L005_R1.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3742141416 FASTQ S19_L005_R1 unaligned CPTAC3 264d55c9-cbb3-4385-b638-960b5669b4d4 32492400738a9f48ad9432c93abfd0e2 {"aliquot_tag": "ALQ_3df1fcb8", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.S19_L005_R2.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4278918205 FASTQ S19_L005_R2 unaligned CPTAC3 fc0ac368-29d4-46b9-a358-9eedd311e503 915a099830b77e0f5f68690246f54785 {"aliquot_tag": "ALQ_3df1fcb8", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.S50_R1.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R1_001.fastq.gz 6946570471 FASTQ S50_R1 unaligned CPTAC3 228e391f-834d-46c4-aa06-d4676d90ff55 45a95e15270e38ef0c45f2b04ba94bf6 {"aliquot_tag": "ALQ_b9c46700", "sample": "S50", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.S50_R2.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R2_001.fastq.gz 7198005683 FASTQ S50_R2 unaligned CPTAC3 50f2e324-fc59-4f61-a6bb-fcd96a9e4f91 3f4e05ea21122dde012951d068f71a8f {"aliquot_tag": "ALQ_b9c46700", "sample": "S50", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.transcriptome.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.transcriptome.gdc_realn.bam 10372122157 BAM transcriptome harmonized CPTAC3 81dbd3b6-6b07-44df-afb3-0e5f5935ee6f 476acd35c1efefe6659e0df8ed4f0d68 {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor"} -C3N-02979.RNA-Seq.transcriptome.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.transcriptome.gdc_realn.bam 5802091016 BAM transcriptome harmonized CPTAC3 bdd619e2-8e83-412c-a5ed-c4b80ac6ec1b ae31916e89a623ccdb4f3460094ef6ab {"aliquot_tag": "ALQ_b9c46700", "gdc_sample_type": "Primary Tumor"} -C3N-02979.WGS.N C3N-02979 UCEC WGS blood_normal CPT0188120002 CPT0188120002.WholeGenome.RP-1303.bam 84174597332 BAM aligned CPTAC3 a9965c83-1b3d-49a9-988b-8281cd2f9de0 d1018dd1e42a203d68805627f929631f {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02979.WGS.N.hg38 C3N-02979 UCEC WGS blood_normal CPT0188120002 89a78c3a-06b4-4949-ac86-9da3271336a6_wgs_gdc_realn.bam 124502640676 BAM harmonized CPTAC3 ece98cec-f6b5-466d-b310-89d2f58b1c04 cde44d4fba9146328bb141895f903fbf {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02979.WGS.T C3N-02979 UCEC WGS tumor CPT0188100007 CPT0188100007.WholeGenome.RP-1303.bam 52705746495 BAM aligned CPTAC3 68f7b81e-7995-49bc-a059-851f18ba14d5 ccc18e4496c2899e7756ef112060aca5 {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor"} -C3N-02979.WGS.T.hg38 C3N-02979 UCEC WGS tumor CPT0188100007 688e4c8e-ff16-4ca3-aec7-014035da8239_wgs_gdc_realn.bam 77795750485 BAM harmonized CPTAC3 f0d3319b-6573-4859-b1ab-135c71e8c5ac b832d84e2f220171614d423c19b42891 {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor"} -C3N-02979.WXS.N C3N-02979 UCEC WXS blood_normal CPT0188120002 CPT0188120002.WholeExome.RP-1303.bam 24092526395 BAM aligned CPTAC3 318df89f-5396-42e0-a7e3-a19c73c9946e d88db1c7606bff1b4a470ca986430df5 {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02979.WXS.N.hg38 C3N-02979 UCEC WXS blood_normal CPT0188120002 89a78c3a-06b4-4949-ac86-9da3271336a6_wxs_gdc_realn.bam 32766113585 BAM harmonized CPTAC3 315e198c-632e-43a2-a33c-61678fbc7493 c6e463418c5b06caf2de73ca2ace57f4 {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal"} -C3N-02979.WXS.T C3N-02979 UCEC WXS tumor CPT0188100007 CPT0188100007.WholeExome.RP-1303.bam 39273712736 BAM aligned CPTAC3 b87d63f7-307a-4833-99df-5334de5a422b 610e308cb1a939923597eeccdee4c0dd {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor"} -C3N-02979.WXS.T.hg38 C3N-02979 UCEC WXS tumor CPT0188100007 688e4c8e-ff16-4ca3-aec7-014035da8239_wxs_gdc_realn.bam 54455032265 BAM harmonized CPTAC3 485c5204-9628-4a50-867b-2be5e90c7980 c984ddaa0e201cfa543738c6267c8a89 {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor"} -C3N-02994.MethArray.Green.T C3N-02994 UCEC Methylation_Array tumor CPT0248000006 203561620064_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 24099cda-84fc-4cf7-be4c-9c54793204ac f7cf882cdad1d65e8fbbdaa9b4d1463c {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor"} -C3N-02994.MethArray.Red.T C3N-02994 UCEC Methylation_Array tumor CPT0248000006 203561620064_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 a04dddda-c4d1-49c4-ab00-26103ab06613 afd79d5d5b2a83a0c97caa03311d13b2 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor"} -C3N-02994.miRNA-Seq.S9_L001_R1.T C3N-02994 UCEC miRNA-Seq tumor CPT0248000009 190508_UNC31-K00269_0215_BH7FYKBBXY_GATCAG_S9_L001_R1_001.unaln.bam 143642551 BAM S9_L001_R1 unaligned CPTAC3 d3c55920-36ae-48cc-b4cb-b8e21c50384d 78bed0f60adc6c9395c4d6a9cc33de92 {"aliquot_tag": "ALQ_f8488f72", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02994.miRNA-Seq.T.hg38 C3N-02994 UCEC miRNA-Seq tumor CPT0248000009 cf841356-e0cc-4a71-a79d-e6c40871bd02_mirnaseq_gdc_realn.bam 166062289 BAM harmonized CPTAC3 9b01b34d-2113-47cc-9156-bdbd60e44eb2 054f4d757786917b74328f055f9084b4 {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.chimeric.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.chimeric.gdc_realn.bam 31093657 BAM chimeric harmonized CPTAC3 80ed7ad4-75ee-4173-a677-8ab34de9f8f9 3e40112defc8809cfd118465dbf1719e {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.chimeric.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.chimeric.gdc_realn.bam 135431156 BAM chimeric harmonized CPTAC3 f2cd45e9-e4ce-48bf-b389-71898a313717 ea93575658ef54a98a1f642d410d9e3e {"aliquot_tag": "ALQ_7f88d6d4", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.genomic.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.genomic.gdc_realn.bam 7747781352 BAM genomic harmonized CPTAC3 921d9da9-2dfd-4b7b-83a8-8e6a9beb904c 0539504e620b5c313e5360559d5d5431 {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.genomic.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.genomic.gdc_realn.bam 11804494214 BAM genomic harmonized CPTAC3 71c6e126-eaf0-4438-b885-7ab4f8d8b27b 319cec01ef6048ecc180b0c5f93fcaae {"aliquot_tag": "ALQ_7f88d6d4", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.S15_L005_R1.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R1_001.fastq.gz 3661868113 FASTQ S15_L005_R1 unaligned CPTAC3 b995d56d-579a-4300-9ab0-fd334b1ca8a2 2bc863b00397937c5dc200d736ca3127 {"aliquot_tag": "ALQ_f8488f72", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.S15_L005_R2.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R2_001.fastq.gz 4190875867 FASTQ S15_L005_R2 unaligned CPTAC3 dbc375a0-3b7e-4181-a849-6ee5d2d81f16 667935fdc3892fcec0eb5cb672223031 {"aliquot_tag": "ALQ_f8488f72", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.S86_R1.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R1_001.fastq.gz 5810227537 FASTQ S86_R1 unaligned CPTAC3 16a4040d-6cb9-4c99-898a-6a1ccaf44a52 2cbbf7f39dd08dc1e829a13d80ef63ad {"aliquot_tag": "ALQ_7f88d6d4", "sample": "S86", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.S86_R2.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R2_001.fastq.gz 5946996502 FASTQ S86_R2 unaligned CPTAC3 bb7242f9-3e20-4739-a2bd-3268133ff616 91b93323ba8d16da049ceb1cc50af508 {"aliquot_tag": "ALQ_7f88d6d4", "sample": "S86", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.transcriptome.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.transcriptome.gdc_realn.bam 10653217237 BAM transcriptome harmonized CPTAC3 1c06f00a-7990-489e-837e-b007070be51d 7264b1338f844d6b90ebb4f2a476065a {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor"} -C3N-02994.RNA-Seq.transcriptome.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.transcriptome.gdc_realn.bam 6493479917 BAM transcriptome harmonized CPTAC3 1f239cab-3a91-4316-927c-823ac7772386 66662c3826f4740d39fa815cbf19de49 {"aliquot_tag": "ALQ_7f88d6d4", "gdc_sample_type": "Primary Tumor"} -C3N-02994.WGS.N C3N-02994 UCEC WGS blood_normal CPT0248020002 CPT0248020002.WholeGenome.RP-1303.bam 75446524146 BAM aligned CPTAC3 f20e2942-1f19-4d91-98e8-1d8ff73e92b3 90d3f2dd7ba79dfefe7ca13273acce96 {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02994.WGS.N.hg38 C3N-02994 UCEC WGS blood_normal CPT0248020002 817230ce-0900-4cca-b699-52f2934b6c94_wgs_gdc_realn.bam 109568450980 BAM harmonized CPTAC3 68065e5b-2b40-41a8-b04a-aee29df393b2 f9dc5cf6878ea1426b83b2266d73172f {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02994.WGS.T C3N-02994 UCEC WGS tumor CPT0248000006 CPT0248000006.WholeGenome.RP-1303.bam 59644262222 BAM aligned CPTAC3 51a451d9-2212-476d-852e-13825bae19a2 4bfcde5ed26d8468f4e8f9e998ba15b7 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor"} -C3N-02994.WGS.T.hg38 C3N-02994 UCEC WGS tumor CPT0248000006 6e080613-cb5b-47b4-a1cc-8fb789dd31da_wgs_gdc_realn.bam 87500423026 BAM harmonized CPTAC3 38bd52bf-81f7-48b4-87fc-1172415af99c 54b105d5d607ab076188d5c3582827a0 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor"} -C3N-02994.WXS.N C3N-02994 UCEC WXS blood_normal CPT0248020002 CPT0248020002.WholeExome.RP-1303.bam 23532961274 BAM aligned CPTAC3 8451f515-5f4d-495a-ba2e-719a9259f3d0 4b3f864856bdadc4c392e63b515aff22 {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02994.WXS.N.hg38 C3N-02994 UCEC WXS blood_normal CPT0248020002 817230ce-0900-4cca-b699-52f2934b6c94_wxs_gdc_realn.bam 31825877339 BAM harmonized CPTAC3 5461a238-4778-4bea-b005-ccd62f2a1459 4573a5b60490b1902652d76902467854 {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal"} -C3N-02994.WXS.T C3N-02994 UCEC WXS tumor CPT0248000006 CPT0248000006.WholeExome.RP-1303.bam 25292492968 BAM aligned CPTAC3 3f76a382-98a6-47a7-9af7-6e011526ac0b 5681cada21afba089136ae230e932f38 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor"} -C3N-02994.WXS.T.hg38 C3N-02994 UCEC WXS tumor CPT0248000006 6e080613-cb5b-47b4-a1cc-8fb789dd31da_wxs_gdc_realn.bam 35356118056 BAM harmonized CPTAC3 ad9b2102-5fc0-4641-9c45-a00f6ea48f71 200fcf4ee5e25b476e0efe8a880351c0 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor"} -C3N-02996.ANN_c487659e.RNA-Seq.chimeric.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.chimeric.gdc_realn.bam 396343179 BAM chimeric harmonized CPTAC3 a6a19b65-eee7-4ce6-bd2f-0aa6a2249a10 6e91f54a5402fd43e918898a5214cf14 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.ANN_c487659e.RNA-Seq.genomic.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.genomic.gdc_realn.bam 15045053170 BAM genomic harmonized CPTAC3 f7079272-e608-4297-ab8a-35b19db0ca62 7d15d844530eed89c5f39d5d15f01356 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.ANN_c487659e.RNA-Seq.S1_L005_R1.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R1_001.fastq.gz 5528271075 FASTQ S1_L005_R1 unaligned CPTAC3 7dd43710-d433-4d6d-a13f-00d1b502e41c d0a3efef5b9ccfad8a7aa58d6972fca5 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02996.ANN_c487659e.RNA-Seq.S1_L005_R2.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R2_001.fastq.gz 6280611223 FASTQ S1_L005_R2 unaligned CPTAC3 0f5dcdca-0bd9-4440-8799-ed1e20b15054 055b437704d97a7ad3c6d2872457c419 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02996.ANN_c487659e.RNA-Seq.transcriptome.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.transcriptome.gdc_realn.bam 13046097029 BAM transcriptome harmonized CPTAC3 3b2969fc-6ab7-4f49-ba4e-c4a83442c212 af87157d94e6f9b939baf9841e5d59f7 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.DUP_3d49bdc1.WXS.T C3N-02996 PDA WXS tumor CPT0187820033 CPT0187820033.WholeExome.RP-1303.bam 37486064868 BAM aligned CPTAC3 1af7be40-3009-47b4-81e0-63e1b75075e5 183d3999101070ee576cff2b4a0f2c5e {"aliquot_tag": "DUP_3d49bdc1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.DUP_3d49bdc1.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820033 6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM harmonized CPTAC3 ed5bb7bd-bedf-4585-9849-16526aae512a b3ff7e7c8215f8c438647c99389abe15 {"aliquot_tag": "DUP_3d49bdc1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.DUP_4a4e8d57.WXS.T C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM aligned CPTAC3 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.DUP_4a4e8d57.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM harmonized CPTAC3 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.DUP_704360fe.RNA-Seq.chimeric.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.chimeric.gdc_realn.bam 29257812 BAM chimeric harmonized CPTAC3 74b6605f-05f5-4a0e-8f44-d17fdb359651 32c31955a5511bd51b674e0914f48ccc {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_704360fe.RNA-Seq.genomic.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.genomic.gdc_realn.bam 10586844730 BAM genomic harmonized CPTAC3 9862cc22-3c6f-4e16-a2e2-df1bb0cba663 822c4910e1ecccd31f020e31f13403a1 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_704360fe.RNA-Seq.S18_L006_R1.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R1_001.fastq.gz 3979442144 FASTQ S18_L006_R1 unaligned CPTAC3 35391da6-589f-420c-80c5-de947f7a2045 80166282b9565b5861e50c3c280c02c0 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_704360fe.RNA-Seq.S18_L006_R2.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R2_001.fastq.gz 4133641460 FASTQ S18_L006_R2 unaligned CPTAC3 1dbfec2a-e020-443f-879e-0fe2c13198e3 ba2be5e6e67230ceb72e862391025a90 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_704360fe.RNA-Seq.transcriptome.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.transcriptome.gdc_realn.bam 10304014062 BAM transcriptome harmonized CPTAC3 fdc1b803-c2bc-48ea-93f8-25724399bb0e 1ecf9b48eb6cdb659712300ab75e249e {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_a32d2862.WXS.T C3N-02996 PDA WXS tumor CPT0187820034 CPT0187820034.WholeExome.RP-1303.bam 23045307994 BAM aligned CPTAC3 d29aebf7-b7ff-4241-a3e6-bb0f3dfc54eb 6db4755450dddbbef51206f5dec25926 {"aliquot_tag": "DUP_a32d2862", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.DUP_a32d2862.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820034 f33b3ac6-a22a-4e63-8480-429e1c2d27ba_wxs_gdc_realn.bam 31875468805 BAM harmonized CPTAC3 b8fc5c89-2d65-40ab-a969-62db1d608896 fb77d5d8f6ec9910a07fe816d6fba9ed {"aliquot_tag": "DUP_a32d2862", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02996.DUP_a98351e4.WXS.N C3N-02996 PDA WXS blood_normal CPT0187870002 CPT0187870002.WholeExome.RP-1303.bam 25792249388 BAM aligned CPTAC3 1d2e0ab5-9afb-4531-8965-42ef2dc880e9 668f43d158647e2e1aacd1b5f8f8b353 {"aliquot_tag": "DUP_a98351e4", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02996.DUP_a98351e4.WXS.N.hg38 C3N-02996 PDA WXS blood_normal CPT0187870002 73505858-157d-4d4f-8e84-359a6344de48_wxs_gdc_realn.bam 35792510687 BAM harmonized CPTAC3 8c1b0bfa-edfc-4d5f-a009-42e5c796dd3f 05ed0c24e0850b51e6d30d74a5d1f74f {"aliquot_tag": "DUP_a98351e4", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal"} -C3N-02996.DUP_e0fc7d6f.RNA-Seq.chimeric.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.chimeric.gdc_realn.bam 93378285 BAM chimeric harmonized CPTAC3 ac669cdf-37ad-480f-bc7d-2f53b096276c e8f98efd69e86788020a1e5c5b7eb679 {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_e0fc7d6f.RNA-Seq.genomic.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.genomic.gdc_realn.bam 11340229054 BAM genomic harmonized CPTAC3 14376aa2-e619-4e47-89f7-5c8b19603978 572df67fe41fded4046f89c90345b236 {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_e0fc7d6f.RNA-Seq.S6_L002_R1.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 3898361037 FASTQ S6_L002_R1 unaligned CPTAC3 a4d065fa-bb51-4c1d-bb63-6fba6e4bef30 fc2adf292e08f4883c7457282455636d {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_e0fc7d6f.RNA-Seq.S6_L002_R2.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4472756687 FASTQ S6_L002_R2 unaligned CPTAC3 7601edaa-4619-49bc-8bd5-af3eae2bee25 99c6130bb8857ca06f46ca490dea4a7b {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02996.DUP_e0fc7d6f.RNA-Seq.transcriptome.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.transcriptome.gdc_realn.bam 10780795094 BAM transcriptome harmonized CPTAC3 9fc9f7d7-fc45-4ebc-b87b-a06ee1691a7b 4c26bd83f53a21f479df51f943648d1e {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal"} -C3N-02997.DUP_6ee29421.MethArray.Green.T C3N-02997 PDA Methylation_Array tumor CPT0187880023 203561450023_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 04eb4f3f-1ac9-49b7-beac-ebc4364957c2 e22f79cd5400d6dac6f0c00be930cb3b {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_6ee29421.MethArray.Red.T C3N-02997 PDA Methylation_Array tumor CPT0187880023 203561450023_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 4e98b347-eed9-4724-8824-d32228a344f2 58520673375a163f28fdf8461d115f8f {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_6ee29421.WGS.T C3N-02997 PDA WGS tumor CPT0187880023 CPT0187880023.WholeGenome.RP-1303.bam 64503080897 BAM aligned CPTAC3 d8ed3017-c630-414c-8193-b31014ef7892 02d78aeff64588b7cc3afd9ea1bdea26 {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_6ee29421.WGS.T.hg38 C3N-02997 PDA WGS tumor CPT0187880023 50dedea3-c620-45ad-b9e5-bbb225fc23a2_wgs_gdc_realn.bam 93086644191 BAM harmonized CPTAC3 e1840a43-7505-415f-9732-41110c300215 c61ba0fe04a0f989f269882490387478 {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_6ee29421.WXS.T C3N-02997 PDA WXS tumor CPT0187880023 CPT0187880023.WholeExome.RP-1303.bam 68430515342 BAM aligned CPTAC3 e2f3e9a7-4c76-491f-a733-9513f00e5b4a d5edc2c03b97ffa74d87c168a71a6a59 {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_6ee29421.WXS.T.hg38 C3N-02997 PDA WXS tumor CPT0187880023 50dedea3-c620-45ad-b9e5-bbb225fc23a2_wxs_gdc_realn.bam 94310236916 BAM harmonized CPTAC3 d74a9a1a-62a2-4b30-b0d0-1447b9021fd2 dc7e708549f217d56c85dc598b54bf8d {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_8e377d3f.WGS.T C3N-02997 PDA WGS tumor CPT0187880029 CPT0187880029.WholeGenome.RP-1303.bam 128295224132 BAM aligned CPTAC3 0873ddcb-6084-4e83-8470-077e1dbeda44 1a91beb18ab8749a3d4828d55d3d624c {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_8e377d3f.WGS.T.hg38 C3N-02997 PDA WGS tumor CPT0187880029 f4651bfd-45a2-4d90-a791-3a6ea57fac74_wgs_gdc_realn.bam 188158529926 BAM harmonized CPTAC3 69501e96-93b0-4fe3-8232-1ff84a129741 47ac8485b07656e81c1c4597563db0e9 {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_8e377d3f.WXS.T C3N-02997 PDA WXS tumor CPT0187880029 CPT0187880029.WholeExome.RP-1303.bam 43567205475 BAM aligned CPTAC3 7b4a54d0-a1dc-4327-98a5-b52ca16d1d41 703c881c2d3f542b5f6ccbe40869ab1e {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.DUP_8e377d3f.WXS.T.hg38 C3N-02997 PDA WXS tumor CPT0187880029 f4651bfd-45a2-4d90-a791-3a6ea57fac74_wxs_gdc_realn.bam 61514647521 BAM harmonized CPTAC3 33fbb651-d2ac-491e-9e61-bdaae9adc2db ef27c289f122ddbc50f79dc493243522 {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor"} -C3N-02997.miRNA-Seq.S4_L002_R1.T C3N-02997 PDA miRNA-Seq tumor CPT0187880020 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L002_R1_001.unaln.bam 188904182 BAM S4_L002_R1 unaligned CPTAC3 5fb3c51f-52b9-41eb-b307-2369ec7c2914 55bd82edcadd64481ceda6ba757420a6 {"aliquot_tag": "ALQ_f7ebc59b", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02997.miRNA-Seq.T.hg38 C3N-02997 PDA miRNA-Seq tumor CPT0187880020 1eeedacb-6e4e-47fd-a701-7a753afdf83f_mirnaseq_gdc_realn.bam 211693903 BAM harmonized CPTAC3 80dbe77f-da51-46d5-b822-183291d01611 a8fd99ab8139c3f8ea4450770325b3a1 {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor"} -C3N-02997.RNA-Seq.chimeric.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.chimeric.gdc_realn.bam 23887870 BAM chimeric harmonized CPTAC3 d8d6afa0-0afa-4e4a-887e-2f295692eee7 355f637b63cdb67c7df1ff59460be859 {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor"} -C3N-02997.RNA-Seq.genomic.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.genomic.gdc_realn.bam 11076419875 BAM genomic harmonized CPTAC3 0d5f1a76-9ddc-4535-a3ca-0c357e04925d 29914cbcf93ad951bd753f0b681a83ae {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor"} -C3N-02997.RNA-Seq.S8_L002_R1.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R1_001.fastq.gz 3834475097 FASTQ S8_L002_R1 unaligned CPTAC3 d7462092-1df0-412e-b272-60f9e0c9799a 031cac9d31b31e2528eef0e263d5679b {"aliquot_tag": "ALQ_f7ebc59b", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02997.RNA-Seq.S8_L002_R2.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R2_001.fastq.gz 4051846905 FASTQ S8_L002_R2 unaligned CPTAC3 b150cdea-b5b2-4335-a26b-8e94a257c0ca 8f8e320d58655e5fd582d56058a23e6f {"aliquot_tag": "ALQ_f7ebc59b", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02997.RNA-Seq.transcriptome.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.transcriptome.gdc_realn.bam 9290512137 BAM transcriptome harmonized CPTAC3 d5f0444f-fbc3-4d1f-a806-95b421164ec4 5704a3fb0fb4e849c8a88e696a6000da {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor"} -C3N-02997.WGS.N C3N-02997 PDA WGS blood_normal CPT0187920002 CPT0187920002.WholeGenome.RP-1303.bam 64560886943 BAM aligned CPTAC3 570d4435-e312-45fe-8488-8f9948aee7df ea2427f42085a60b4d57ebf20c1b1ec7 {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02997.WGS.N.hg38 C3N-02997 PDA WGS blood_normal CPT0187920002 ec85c30a-c8b0-4610-944a-85e223670cd6_wgs_gdc_realn.bam 92624705727 BAM harmonized CPTAC3 421461bc-6177-4cbb-a9cc-c98cf68b91aa 57c5c2672941fa037759326bb803fea6 {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02997.WXS.N C3N-02997 PDA WXS blood_normal CPT0187920002 CPT0187920002.WholeExome.RP-1303.bam 24446342493 BAM aligned CPTAC3 1252179f-34e9-4028-bead-bd41a38300b5 70e850f0346ef024b9b3e844a36a0abd {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02997.WXS.N.hg38 C3N-02997 PDA WXS blood_normal CPT0187920002 ec85c30a-c8b0-4610-944a-85e223670cd6_wxs_gdc_realn.bam 33307097960 BAM harmonized CPTAC3 d85499af-013d-4afd-9be4-263b92a2f996 75e74ef41a1b76496bf0f84f7ea53219 {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal"} -C3N-02997.WXS.T C3N-02997 PDA WXS tumor CPT0187880025 CPT0187880025.WholeExome.RP-1303.bam 52630614915 BAM aligned CPTAC3 8648eac7-7167-49e3-bf28-c2c01f697f50 53bff600ca0127553ad2a8f43ae9a479 {"aliquot_tag": "ALQ_87813114", "gdc_sample_type": "Primary Tumor"} -C3N-02998.MethArray.Green.T C3N-02998 PDA Methylation_Array tumor CPT0187930008 203561620077_R01C01_Grn.idat 13676214 IDAT Green NA CPTAC3 a5983d0a-bf2a-40b1-94ec-790fc181ebb1 504df97e34fa8b23ed02197a7ceaa4a3 {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor"} -C3N-02998.MethArray.Red.T C3N-02998 PDA Methylation_Array tumor CPT0187930008 203561620077_R01C01_Red.idat 13676214 IDAT Red NA CPTAC3 1f0628ad-2055-4073-9466-e8e1fdde2588 9085908c1fbd255be1ac6072219e4045 {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor"} -C3N-02998.miRNA-Seq.S149_L007_R1.T C3N-02998 PDA miRNA-Seq tumor CPT0187930011 190828_UNC32-K00270_0200_BH7GVJBBXY_ATTCCT_S149_L007_R1_001.unaln.bam 193665924 BAM S149_L007_R1 unaligned CPTAC3 4a74c685-8a11-4a7c-ba1e-084219741373 fb846c4cf83b747e087d0fec5db564bd {"aliquot_tag": "ALQ_174d447a", "sample": "S149", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02998.miRNA-Seq.T.hg38 C3N-02998 PDA miRNA-Seq tumor CPT0187930011 4b55f44e-bf95-4359-854d-0e0fdf888c83_mirnaseq_gdc_realn.bam 212664658 BAM harmonized CPTAC3 d0e5abbc-3db2-495b-ba33-033245459c2b 44bc41597277fd2b7a311f2e4e3c7a41 {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor"} -C3N-02998.RNA-Seq.chimeric.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.chimeric.gdc_realn.bam 34903971 BAM chimeric harmonized CPTAC3 405c51d4-5c37-406b-858d-f7348dcfc295 06f91aca94d560ba696742c109c2c6d9 {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor"} -C3N-02998.RNA-Seq.genomic.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.genomic.gdc_realn.bam 8124643414 BAM genomic harmonized CPTAC3 a593751b-30d0-4211-ad2c-7bb0c9d4b26e e3aeb231c5250d4d7950ddeb62e5c5ff {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor"} -C3N-02998.RNA-Seq.S12_L003_R1.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R1_001.fastq.gz 3810750341 FASTQ S12_L003_R1 unaligned CPTAC3 bb3f5976-cf4d-48ff-9c8d-114bce4f2979 ce7970dbcdcf5b410043e4ec9a2dbdf1 {"aliquot_tag": "ALQ_174d447a", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-02998.RNA-Seq.S12_L003_R2.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R2_001.fastq.gz 4118885680 FASTQ S12_L003_R2 unaligned CPTAC3 9b05c168-9ae7-4fe1-9edc-1fb442ee2b2c 7ba57736074d55fb014d5d21ffd379d7 {"aliquot_tag": "ALQ_174d447a", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-02998.RNA-Seq.transcriptome.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.transcriptome.gdc_realn.bam 10615689387 BAM transcriptome harmonized CPTAC3 8ce05acc-b55a-49d6-93fe-73af49c25b74 20f7707fafbdae58263261b315cb1e74 {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor"} -C3N-02998.WGS.N C3N-02998 PDA WGS blood_normal CPT0187950002 CPT0187950002.WholeGenome.RP-1303.bam 60347374885 BAM aligned CPTAC3 05c063fd-8139-441f-8fff-255113106d35 2accd548c175e3ef698e672711b1d450 {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02998.WGS.N.hg38 C3N-02998 PDA WGS blood_normal CPT0187950002 a04c1a55-7f29-4e6f-96a4-343dcec2a11d_wgs_gdc_realn.bam 86700302599 BAM harmonized CPTAC3 7510d57b-d023-4872-9d5b-71123e9dcc3c e5caeecaf2df0a13e1c6fc3df5050ed9 {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02998.WGS.T C3N-02998 PDA WGS tumor CPT0187930008 CPT0187930008.WholeGenome.RP-1303.bam 132258666810 BAM aligned CPTAC3 01f606f5-50ec-4542-ba97-5792d94a045c 54c584dd67f3ebcbd4e7e7cba35d7e3d {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor"} -C3N-02998.WGS.T.hg38 C3N-02998 PDA WGS tumor CPT0187930008 42b516fb-b82e-44be-a6ec-57f4b2b14b2a_wgs_gdc_realn.bam 189886011380 BAM harmonized CPTAC3 0dd8d3b2-fc86-43c2-8fe6-c1d3873d1643 0090d373483354daaeb601ddea40b5dc {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor"} -C3N-02998.WXS.N C3N-02998 PDA WXS blood_normal CPT0187950002 CPT0187950002.WholeExome.RP-1303.bam 25539712620 BAM aligned CPTAC3 e0edb06e-06c4-43b9-a2e5-0a744eec51c5 dd2f32c078b89f7af865bc6477263cd6 {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02998.WXS.N.hg38 C3N-02998 PDA WXS blood_normal CPT0187950002 a04c1a55-7f29-4e6f-96a4-343dcec2a11d_wxs_gdc_realn.bam 34793270866 BAM harmonized CPTAC3 d39404ab-d27e-4cc7-8390-3333fdff530f 26df83848d27a9104ec50b136d9b339f {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal"} -C3N-02998.WXS.T C3N-02998 PDA WXS tumor CPT0187930008 CPT0187930008.WholeExome.RP-1303.bam 54831179770 BAM aligned CPTAC3 47999c48-c009-4177-bd88-d58693ec3d6c 9bb3725691d0995af3b7680dd5da26cf {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor"} -C3N-02998.WXS.T.hg38 C3N-02998 PDA WXS tumor CPT0187930008 42b516fb-b82e-44be-a6ec-57f4b2b14b2a_wxs_gdc_realn.bam 75572581571 BAM harmonized CPTAC3 eaa97ae3-f572-4484-8463-aae4d564c899 423efbd4befdf2383e102207646e7312 {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor"} -C3N-03000.miRNA-Seq.S16_L004_R1.T C3N-03000 PDA miRNA-Seq tumor CPT0226490010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTCAGA_S16_L004_R1_001.unaln.bam 194981114 BAM S16_L004_R1 unaligned CPTAC3 89fca0d1-10af-4ec3-bb4e-5905fb9b0ded 9e762b76379d591b2588a6d6fec2070e {"aliquot_tag": "ALQ_985e542a", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03000.miRNA-Seq.T.hg38 C3N-03000 PDA miRNA-Seq tumor CPT0226490010 7272726f-32f1-4225-ae3c-73c022a8b785_mirnaseq_gdc_realn.bam 222829273 BAM harmonized CPTAC3 275da72e-dfa7-4a39-aec6-ff40785022d2 5345aad816c9ae25dd99ea9cc9d3faef {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor"} -C3N-03000.RNA-Seq.chimeric.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.chimeric.gdc_realn.bam 33155620 BAM chimeric harmonized CPTAC3 218e3540-cf77-4112-ac1c-a0cba76e6c74 533513cbe215ee21c52bd5ab510fbdfd {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor"} -C3N-03000.RNA-Seq.genomic.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.genomic.gdc_realn.bam 8416966449 BAM genomic harmonized CPTAC3 df551248-daa8-4f7c-b46e-2c2f4601dcc4 b93bf371d181e408402735c9d91b7b87 {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor"} -C3N-03000.RNA-Seq.S5_L002_R1.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R1_001.fastq.gz 3869639482 FASTQ S5_L002_R1 unaligned CPTAC3 54a81289-1137-4f78-b8bf-9ecc81dec020 a1f0aa2baee1ef7b8ada7925f9c9aae0 {"aliquot_tag": "ALQ_985e542a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03000.RNA-Seq.S5_L002_R2.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R2_001.fastq.gz 4496572036 FASTQ S5_L002_R2 unaligned CPTAC3 724184e1-df7b-45a8-a54a-3e06e70cdfac cb65fdfde0143dfc302fcbced1f5bdba {"aliquot_tag": "ALQ_985e542a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03000.RNA-Seq.transcriptome.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.transcriptome.gdc_realn.bam 11096125265 BAM transcriptome harmonized CPTAC3 8afcb85d-d0fb-49f2-ad56-288eab58e3a2 91caa51d0d568d44e5e6c8d1c104fa7c {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor"} -C3N-03000.WGS.N C3N-03000 PDA WGS blood_normal CPT0226510002 CPT0226510002.WholeGenome.RP-1303.bam 60250350153 BAM aligned CPTAC3 582cb241-469a-45ae-b8b2-720f4ea0876e 331543ae1821180f65a5a3cb532cf4ef {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-03000.WGS.N.hg38 C3N-03000 PDA WGS blood_normal CPT0226510002 7641e92d-11b2-4a00-a7df-73582f959c5f_wgs_gdc_realn.bam 89957250752 BAM harmonized CPTAC3 89f61f41-6102-42d4-9f39-49c9ee23caf6 315275592128e9bab1b18439d54ea64c {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-03000.WGS.T C3N-03000 PDA WGS tumor CPT0226490006 CPT0226490006.WholeGenome.RP-1303.bam 140087147185 BAM aligned CPTAC3 b363b042-5723-4672-a011-0b8e8cb3f703 c812b24c7914a5783521e7af4cb26a73 {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor"} -C3N-03000.WGS.T.hg38 C3N-03000 PDA WGS tumor CPT0226490006 804331e1-1baf-40fa-bb2c-bd355ef62f54_wgs_gdc_realn.bam 209381222415 BAM harmonized CPTAC3 3a761f9d-6bbe-42f1-a15f-3fd40f1843ce 7dacbfada69ce8c184f501fbe5981f2c {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor"} -C3N-03000.WXS.N C3N-03000 PDA WXS blood_normal CPT0226510002 CPT0226510002.WholeExome.RP-1303.bam 26917740859 BAM aligned CPTAC3 ae527307-76a2-45aa-94ac-459523836ea6 4b4459b60d45d9424d70de9e2eaa7c96 {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-03000.WXS.N.hg38 C3N-03000 PDA WXS blood_normal CPT0226510002 7641e92d-11b2-4a00-a7df-73582f959c5f_wxs_gdc_realn.bam 36787510165 BAM harmonized CPTAC3 6108bfea-9c5f-421a-8d73-41760132c927 1fe055ae6d00f6f1c656b2fbdab19170 {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal"} -C3N-03000.WXS.T C3N-03000 PDA WXS tumor CPT0226490006 CPT0226490006.WholeExome.RP-1303.bam 23747704186 BAM aligned CPTAC3 eca7ad89-574d-4c0b-bb59-ace9506ac21a 255f3ec9cb6f8f4958d288ea95eea504 {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor"} -C3N-03000.WXS.T.hg38 C3N-03000 PDA WXS tumor CPT0226490006 804331e1-1baf-40fa-bb2c-bd355ef62f54_wxs_gdc_realn.bam 32714801429 BAM harmonized CPTAC3 2ad277cc-2d7f-4d18-a7d6-d110b7cc7b01 24a55c85ea603e11fc342ddffb52fecb {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor"} -C3N-03001.MethArray.Green.T C3N-03001 GBM Methylation_Array tumor CPT0248230006 204367470132_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5f7be741-0480-4521-87ed-f519c24745b9 8026394916dc010d06ab2dbc5129699d {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor"} -C3N-03001.MethArray.Red.T C3N-03001 GBM Methylation_Array tumor CPT0248230006 204367470132_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 adc9401c-f592-47de-a534-3ca99f3cf183 feac0b28926175b4065ead0396f744f2 {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor"} -C3N-03001.miRNA-Seq.S35_L002_R1.T C3N-03001 GBM miRNA-Seq tumor CPT0248230009 200403_UNC31-K00269_0274_AHCF7GBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 220154090 BAM S35_L002_R1 unaligned CPTAC3 ab9934f5-2e2f-49a7-989f-fc5ce90b0ad2 59f997c0994657e8e603673b0562817e {"aliquot_tag": "ALQ_f22054a9", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03001.miRNA-Seq.T.hg38 C3N-03001 GBM miRNA-Seq tumor CPT0248230009 f01b3ee3-eb0d-4faf-9431-51078e0bde67_mirnaseq_gdc_realn.bam 246572830 BAM harmonized CPTAC3 24b0e422-f608-4908-a1e5-161e44cb2cad 655f8017e3ff204ada57b6197f581e27 {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor"} -C3N-03001.RNA-Seq.chimeric.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.chimeric.gdc_realn.bam 198690393 BAM chimeric harmonized CPTAC3 3bcd1232-38fa-4196-9e2d-c8e02e68fd2e f458af4c2a69eae2f7d554a969d2a323 {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor"} -C3N-03001.RNA-Seq.genomic.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.genomic.gdc_realn.bam 9160804913 BAM genomic harmonized CPTAC3 1b81aa50-f275-4420-bacc-42df6d331f64 a8d5c2b5be48a1b483509fd1dcbff56f {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor"} -C3N-03001.RNA-Seq.S3_L001_R1.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 3761960687 FASTQ S3_L001_R1 unaligned CPTAC3 1b916065-70cc-431f-923f-2e2305f9491b 132eec228d43b24a9fb5092a6d019865 {"aliquot_tag": "ALQ_f22054a9", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03001.RNA-Seq.S3_L001_R2.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ S3_L001_R2 unaligned CPTAC3 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d 4f47f1399b812130c239f1b39deb5fab {"aliquot_tag": "ALQ_f22054a9", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03001.RNA-Seq.transcriptome.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.transcriptome.gdc_realn.bam 7901986050 BAM transcriptome harmonized CPTAC3 cc19d3f2-13bf-475c-a2aa-432d3d0f1e04 6373a829540f485a2bba0d8b3c95164a {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor"} -C3N-03001.WGS.N C3N-03001 GBM WGS blood_normal CPT0248310002 CPT0248310002.WholeGenome.RP-2158.bam 25352497557 BAM aligned CPTAC3 680cef4f-4ec7-41c7-91cf-507eb20e1dc9 248cabe88345469bf9bd013dee2ce580 {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03001.WGS.N.hg38 C3N-03001 GBM WGS blood_normal CPT0248310002 b1328107-60b3-4caa-9aeb-4a20ff059f1b_wgs_gdc_realn.bam 74657515788 BAM harmonized CPTAC3 d094a1b6-d186-450d-8cd9-4581a517d22b 5fcb4f8bdc5921fadbae059e670b309c {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03001.WGS.T C3N-03001 GBM WGS tumor CPT0248230006 CPT0248230006.WholeGenome.RP-2158.bam 20492866379 BAM aligned CPTAC3 6006e857-617d-4e76-b433-d456e450cc8c aa598b87a110af43b6fa8dff2fdca44b {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor"} -C3N-03001.WGS.T.hg38 C3N-03001 GBM WGS tumor CPT0248230006 48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wgs_gdc_realn.bam 60902173210 BAM harmonized CPTAC3 08172ae7-bf7e-4d27-bd8e-4154e1445f55 6733e5e47581da3229b1f616d5ec8cae {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor"} -C3N-03001.WXS.N C3N-03001 GBM WXS blood_normal CPT0248310002 CPT0248310002.WholeExome.RP-1303.bam 20959866756 BAM aligned CPTAC3 72bcb59e-8385-49e3-91c7-52c7e2cd53e9 0d5c9a9e2cdd83bb58fc9664287255f6 {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03001.WXS.N.hg38 C3N-03001 GBM WXS blood_normal CPT0248310002 b1328107-60b3-4caa-9aeb-4a20ff059f1b_wxs_gdc_realn.bam 28582690598 BAM harmonized CPTAC3 6e69c87c-2a68-409e-832e-ea3516ed05d0 0c73b4586e4f93aaeb656b3e29f9c69d {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03001.WXS.T C3N-03001 GBM WXS tumor CPT0248230006 CPT0248230006.WholeExome.RP-1303.bam 18881735796 BAM aligned CPTAC3 2be1cd42-fb56-4660-93fd-8b16cf116f9e 104a581d25eedcf8d83d892e9c84ae93 {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor"} -C3N-03001.WXS.T.hg38 C3N-03001 GBM WXS tumor CPT0248230006 48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wxs_gdc_realn.bam 26465631028 BAM harmonized CPTAC3 8e07bc8c-5075-4347-866e-921ec2ff009f 5c315b6a0d281f91b355142d1d6b9c9a {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor"} -C3N-03003.MethArray.Green.T C3N-03003 GBM Methylation_Array tumor CPT0224960006 204372030106_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 82c00b30-c1fb-4d7f-b62d-b1e842ca0ef1 d0ae814e489fd8b398645c8248e617bd {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor"} -C3N-03003.MethArray.Red.T C3N-03003 GBM Methylation_Array tumor CPT0224960006 204372030106_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 df6da8b9-723f-4194-b38e-9ad587d0a819 4ba04447ab9435ef5346518a0395468d {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor"} -C3N-03003.miRNA-Seq.S44_L002_R1.T C3N-03003 GBM miRNA-Seq tumor CPT0224960009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 242262802 BAM S44_L002_R1 unaligned CPTAC3 77dd96e1-b665-4e7a-b3cb-b336a6907184 0d8fed3e0aa24bc83dbd17fce26efa96 {"aliquot_tag": "ALQ_51c848e9", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03003.miRNA-Seq.T.hg38 C3N-03003 GBM miRNA-Seq tumor CPT0224960009 29d318a8-fcc5-430d-a734-e0fd1a07c227_mirnaseq_gdc_realn.bam 266042176 BAM harmonized CPTAC3 54d4483f-fa2a-46b0-b9ba-2cc022056c7e f89f2419744618c4816ddb50e88b866b {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor"} -C3N-03003.RNA-Seq.chimeric.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.chimeric.gdc_realn.bam 28223096 BAM chimeric harmonized CPTAC3 382cc3a5-3a05-40df-9148-f0e6709c6acd a25bfd4d6043c52d96e760b2c65de30d {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor"} -C3N-03003.RNA-Seq.genomic.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.genomic.gdc_realn.bam 7300753571 BAM genomic harmonized CPTAC3 cdc0ec94-b498-4a4c-9d82-7473738d31be aa9ae881d871d4bd6f3a87c860a33f1e {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor"} -C3N-03003.RNA-Seq.S12_L003_R1.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ S12_L003_R1 unaligned CPTAC3 c465924b-72b1-4df5-858a-bdfdc8c0f484 29e93e21fe30da7ea17daf6e76184148 {"aliquot_tag": "ALQ_51c848e9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03003.RNA-Seq.S12_L003_R2.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ S12_L003_R2 unaligned CPTAC3 b68baa4c-eac8-4981-8f81-936605755b5d 9b878312a5c812b1811c8bfe4519a79c {"aliquot_tag": "ALQ_51c848e9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03003.RNA-Seq.transcriptome.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.transcriptome.gdc_realn.bam 7456818471 BAM transcriptome harmonized CPTAC3 f4e7adf8-4dc6-45a7-b7bd-0f6ca0452964 b89882e9dae70de20ebe48526dec8b16 {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor"} -C3N-03003.WGS.N C3N-03003 GBM WGS blood_normal CPT0225800002 CPT0225800002.WholeGenome.RP-2158.bam 21861962263 BAM aligned CPTAC3 afaa9fdc-4de9-4cc5-9cfb-9d5203ce917d 3386854f00785cd9febe25f4129d9b9c {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03003.WGS.N.hg38 C3N-03003 GBM WGS blood_normal CPT0225800002 201dfe54-d739-488d-9e80-1ced195f0d9b_wgs_gdc_realn.bam 66348324743 BAM harmonized CPTAC3 daaee450-05a7-4451-a8bc-466d4cc6a324 229fb9b7f24b01fcf83b57ed93d99dc7 {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03003.WGS.T C3N-03003 GBM WGS tumor CPT0224960006 CPT0224960006.WholeGenome.RP-2158.bam 21329109644 BAM aligned CPTAC3 8f9259aa-8bab-4474-a691-dee8dad78929 222b2e704d7876217d88d8681498942c {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor"} -C3N-03003.WGS.T.hg38 C3N-03003 GBM WGS tumor CPT0224960006 0aca7784-683e-4437-b212-755d450109a4_wgs_gdc_realn.bam 59786107963 BAM harmonized CPTAC3 1b3e7ab1-5148-4ffa-bc1a-fd0224d0ab94 ce8e85a07b183fa7349ffac6e8ca9ba4 {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor"} -C3N-03003.WXS.N C3N-03003 GBM WXS blood_normal CPT0225800002 CPT0225800002.WholeExome.RP-1303.bam 26282388701 BAM aligned CPTAC3 c4593faf-c37d-4df9-96a5-54b179acbae5 8a88dda550d303fb80a7a41dc98a846d {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03003.WXS.N.hg38 C3N-03003 GBM WXS blood_normal CPT0225800002 201dfe54-d739-488d-9e80-1ced195f0d9b_wxs_gdc_realn.bam 36035172361 BAM harmonized CPTAC3 e5df19e6-aad5-4a50-a453-b0d21278ea73 38b162929b8313ab73fef16391a95c23 {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03003.WXS.T C3N-03003 GBM WXS tumor CPT0224960006 CPT0224960006.WholeExome.RP-1303.bam 23932320080 BAM aligned CPTAC3 52530a4d-7ae0-4fa0-b4a4-a0a9667a4878 7584e0cee2f96d5a869d2030c46e7a58 {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor"} -C3N-03003.WXS.T.hg38 C3N-03003 GBM WXS tumor CPT0224960006 0aca7784-683e-4437-b212-755d450109a4_wxs_gdc_realn.bam 33401908422 BAM harmonized CPTAC3 14918c16-a4fb-48c0-896b-6f09dbdaae00 89fb3a72754101a6d0763df19b4a4d3e {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor"} -C3N-03005.MethArray.Green.T C3N-03005 UCEC Methylation_Array tumor CPT0247940006 203561450073_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1887d283-2f63-4ad6-b1de-2aa4a821ceac d54cfc5c83d9052405dd9132e15787ce {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor"} -C3N-03005.MethArray.Red.T C3N-03005 UCEC Methylation_Array tumor CPT0247940006 203561450073_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 e5caecbf-010c-4977-8534-6911d7450609 45723368e2050c8948c9f5555c909738 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor"} -C3N-03005.miRNA-Seq.S7_L001_R1.T C3N-03005 UCEC miRNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGATC_S7_L001_R1_001.unaln.bam 221844926 BAM S7_L001_R1 unaligned CPTAC3 2551cf95-ff28-4726-ac0c-9821a404d9bc f1374f8930c0f3be7d62ffe604ceaed8 {"aliquot_tag": "ALQ_dc8f0893", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03005.miRNA-Seq.T.hg38 C3N-03005 UCEC miRNA-Seq tumor CPT0247940009 8d630c1c-64dd-4e19-8f55-4270c464729d_mirnaseq_gdc_realn.bam 249197684 BAM harmonized CPTAC3 64261df7-c073-4396-80ba-8db76c0838fd 35b8c668043d2b9a200f9af354b69ccc {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.chimeric.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.chimeric.gdc_realn.bam 32561294 BAM chimeric harmonized CPTAC3 6d6c8fcc-5fb4-4332-acfb-4844f5e16c6d 5d6ddd5e229c51c3f3df878d83615fc8 {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.chimeric.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.chimeric.gdc_realn.bam 225607764 BAM chimeric harmonized CPTAC3 9cff33db-397b-48fa-91be-b2dc16fa6b1f 46cb8f1a8425d2bc298503a5b4df9cda {"aliquot_tag": "ALQ_83dcf71a", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.genomic.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.genomic.gdc_realn.bam 8149412697 BAM genomic harmonized CPTAC3 0b95ad44-5943-4e69-b0a6-108e72f6a6e9 97f0a7dbf17dd7356a49ad527b658d18 {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.genomic.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.genomic.gdc_realn.bam 8418364202 BAM genomic harmonized CPTAC3 bb9d8cb6-9909-443e-9526-b37e642b2c3c 695a30a0949af54c9eef5c891ecf8b7f {"aliquot_tag": "ALQ_83dcf71a", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.S18_L005_R1.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R1_001.fastq.gz 3900170966 FASTQ S18_L005_R1 unaligned CPTAC3 1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac 350943c4acec4f0e2ddb9baef388dce8 {"aliquot_tag": "ALQ_dc8f0893", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.S18_L005_R2.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R2_001.fastq.gz 4267444972 FASTQ S18_L005_R2 unaligned CPTAC3 660d46c1-49bb-4bed-9382-5279c22c13f8 5c1a55a1cd0d5e2578c9152b5f41ded3 {"aliquot_tag": "ALQ_dc8f0893", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.S76_R1.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R1_001.fastq.gz 5615640760 FASTQ S76_R1 unaligned CPTAC3 2d47901f-2b7d-4329-9061-b3fda249ebde feef6a77fb3f6d9c5f17b8cf16aeeb1c {"aliquot_tag": "ALQ_83dcf71a", "sample": "S76", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.S76_R2.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R2_001.fastq.gz 5783374916 FASTQ S76_R2 unaligned CPTAC3 e97b3e53-a357-4ca5-ae25-325026a707e6 c78ff111ca289d0493d619bbaf08717f {"aliquot_tag": "ALQ_83dcf71a", "sample": "S76", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.transcriptome.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.transcriptome.gdc_realn.bam 10965349086 BAM transcriptome harmonized CPTAC3 1ee55a5c-1259-46c0-9a1f-8560a4c3ec14 4cdae2181d46dd76a4f3b43b12fb3335 {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor"} -C3N-03005.RNA-Seq.transcriptome.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.transcriptome.gdc_realn.bam 3478357843 BAM transcriptome harmonized CPTAC3 ce365184-e4e3-4bf4-9a57-6e8e54e1e63a 0be6cc1c5d52844939c5480aa93cdcb1 {"aliquot_tag": "ALQ_83dcf71a", "gdc_sample_type": "Primary Tumor"} -C3N-03005.WGS.N C3N-03005 UCEC WGS blood_normal CPT0247960002 CPT0247960002.WholeGenome.RP-1303.bam 56898050180 BAM aligned CPTAC3 d028fa1b-6ff7-434c-83b8-0cebe1465223 28ca3f6595f420a44e24fb07af11488f {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03005.WGS.N.hg38 C3N-03005 UCEC WGS blood_normal CPT0247960002 1ff09d98-fbb1-4c76-a9b2-89d6d6d611db_wgs_gdc_realn.bam 85141307683 BAM harmonized CPTAC3 d727a80b-069b-4e7d-af2e-efc35e450cc5 6118797b3d15fd968a265be40b163fb3 {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03005.WGS.T C3N-03005 UCEC WGS tumor CPT0247940006 CPT0247940006.WholeGenome.RP-1303.bam 60778731002 BAM aligned CPTAC3 75788105-8153-4da4-8e53-45c2df7e4e5f e64b16b9e103e4828d958a9aaa505fb1 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor"} -C3N-03005.WGS.T.hg38 C3N-03005 UCEC WGS tumor CPT0247940006 c2023af5-33df-4fda-9cea-651f670883d1_wgs_gdc_realn.bam 88074413179 BAM harmonized CPTAC3 dd0c1b49-1b32-4e7d-94b9-7c4431de5ba9 cf367d81503654bda9b2bc5169aef550 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor"} -C3N-03005.WXS.N C3N-03005 UCEC WXS blood_normal CPT0247960002 CPT0247960002.WholeExome.RP-1303.bam 27385246152 BAM aligned CPTAC3 6847419a-d970-45b6-82cf-c083c0236cae 6fc524650133e0b4388cc9edacd65d54 {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03005.WXS.N.hg38 C3N-03005 UCEC WXS blood_normal CPT0247960002 1ff09d98-fbb1-4c76-a9b2-89d6d6d611db_wxs_gdc_realn.bam 36969941505 BAM harmonized CPTAC3 1238a840-b705-49c8-ab8c-2985b27db421 caa01bd3bf500cdfb742e834d4a86853 {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03005.WXS.T C3N-03005 UCEC WXS tumor CPT0247940006 CPT0247940006.WholeExome.RP-1303.bam 27725720744 BAM aligned CPTAC3 a16e7d5a-482e-4490-94ab-df291357fb40 88e7b3c33abe30147e35fcf11236df83 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor"} -C3N-03005.WXS.T.hg38 C3N-03005 UCEC WXS tumor CPT0247940006 c2023af5-33df-4fda-9cea-651f670883d1_wxs_gdc_realn.bam 38981632659 BAM harmonized CPTAC3 73368a54-aef7-435b-8614-434d0878a242 5300198f63d0c6b25d5b99ee874629d8 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor"} -C3N-03006.MethArray.Green.T C3N-03006 PDA Methylation_Array tumor CPT0226530007 203561450062_R06C01_Grn.idat 13676217 IDAT Green NA CPTAC3 4361c03f-4430-4df1-82dd-3623422b816f a4eb6d9c0d412eee0cbd0df7832c0651 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor"} -C3N-03006.MethArray.Red.T C3N-03006 PDA Methylation_Array tumor CPT0226530007 203561450062_R06C01_Red.idat 13676217 IDAT Red NA CPTAC3 7f4e4a5c-99b6-4512-908c-cb80dc3cbee5 bac25dfb30ef08d97ba864829f513aa3 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor"} -C3N-03006.miRNA-Seq.S19_L003_R1.T C3N-03006 PDA miRNA-Seq tumor CPT0226530014 190813_UNC32-K00270_0196_AH5MCWBBXY_CATGGC_S19_L003_R1_001.unaln.bam 311672891 BAM S19_L003_R1 unaligned CPTAC3 6cd86076-8d56-4f74-a976-46b4d87a4717 4f379e1a299e4ec109ea0078c304f9c9 {"aliquot_tag": "ALQ_1edf5b37", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03006.miRNA-Seq.T.hg38 C3N-03006 PDA miRNA-Seq tumor CPT0226530014 89365744-3b9c-471d-b923-46814e31ff2a_mirnaseq_gdc_realn.bam 353629087 BAM harmonized CPTAC3 60767f56-bed7-4a8d-b937-491775cc9583 bbfded9a66cdc01bc7d63bc5c45aaedf {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor"} -C3N-03006.RNA-Seq.chimeric.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.chimeric.gdc_realn.bam 38201474 BAM chimeric harmonized CPTAC3 afe67a1c-2111-458a-8766-bc28f35590d0 c2956d1180a07840cfb68e1e6316138c {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor"} -C3N-03006.RNA-Seq.genomic.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.genomic.gdc_realn.bam 9531109301 BAM genomic harmonized CPTAC3 9a13c97c-b6df-482f-9f2a-718d4622321e a36f7e01df681c94617b72ea75fea5a0 {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor"} -C3N-03006.RNA-Seq.S28_L007_R1.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R1_001.fastq.gz 4371309904 FASTQ S28_L007_R1 unaligned CPTAC3 056f7b6d-efb7-4819-9688-cda521c7f33a fd3bd3ff2736a2e5047f7935b6e6d845 {"aliquot_tag": "ALQ_1edf5b37", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03006.RNA-Seq.S28_L007_R2.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R2_001.fastq.gz 4977189999 FASTQ S28_L007_R2 unaligned CPTAC3 f0543f34-912b-4e61-b5f9-4edb67cd470b 1914a1e5f262a6bebadc9dcb89f8031c {"aliquot_tag": "ALQ_1edf5b37", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03006.RNA-Seq.transcriptome.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.transcriptome.gdc_realn.bam 12998677832 BAM transcriptome harmonized CPTAC3 13ac70e8-42cc-4733-891d-008e6a02d22e a4d00e8c3913080383c6c18014fadc17 {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor"} -C3N-03006.WGS.N C3N-03006 PDA WGS blood_normal CPT0226560002 CPT0226560002.WholeGenome.RP-1303.bam 61553450356 BAM aligned CPTAC3 63d7cc46-f4f5-475f-aef9-7d507d954ec0 643a38365109b8959fd7f3cda0490668 {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal"} -C3N-03006.WGS.N.hg38 C3N-03006 PDA WGS blood_normal CPT0226560002 3e7802fb-6c5a-401a-a96b-b4841658da68_wgs_gdc_realn.bam 90395514592 BAM harmonized CPTAC3 46a065d1-0954-45b5-8841-c4fcee9123ee ee267514eaae5045ed8fb86313731a5f {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal"} -C3N-03006.WGS.T C3N-03006 PDA WGS tumor CPT0226530007 CPT0226530007.WholeGenome.RP-1303.PDO-18613.bam 124434652726 BAM aligned CPTAC3 acc95aca-cca5-48a9-920f-acb8b0d03aea d627dca3d9198651f98f0039d48cc7de {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor"} -C3N-03006.WGS.T.hg38 C3N-03006 PDA WGS tumor CPT0226530007 958db0ae-6e71-4afb-9890-a4ee8c306257_wgs_gdc_realn.bam 181676498605 BAM harmonized CPTAC3 74fdc2cb-66b8-493c-a923-7a39181d6270 f99cfede1a81aa91f6e81f05ff11890e {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor"} -C3N-03006.WXS.N C3N-03006 PDA WXS blood_normal CPT0226560002 CPT0226560002.WholeExome.RP-1303.bam 24073727073 BAM aligned CPTAC3 f537ea50-61ba-48ee-ba16-7d1aad710f1f 20749fe891d258b36dc5a8bd75220c44 {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal"} -C3N-03006.WXS.N.hg38 C3N-03006 PDA WXS blood_normal CPT0226560002 3e7802fb-6c5a-401a-a96b-b4841658da68_wxs_gdc_realn.bam 33148493873 BAM harmonized CPTAC3 94490b00-bfd8-44d7-86cd-7c848ed8e719 8f97687a54799ad1647af21385d32867 {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal"} -C3N-03006.WXS.T C3N-03006 PDA WXS tumor CPT0226530007 CPT0226530007.WholeExome.RP-1303.bam 31924884407 BAM aligned CPTAC3 f881cabd-a784-468f-8d0e-edf78397742d b9d0a16a650158bf5e4708ce39e322b1 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor"} -C3N-03006.WXS.T.hg38 C3N-03006 PDA WXS tumor CPT0226530007 958db0ae-6e71-4afb-9890-a4ee8c306257_wxs_gdc_realn.bam 44045889087 BAM harmonized CPTAC3 113496e6-5d52-4573-a1a7-d031b1d46bd1 0f1ba56f166790664a6cc35a3da5a673 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor"} -C3N-03007.MethArray.Green.T C3N-03007 PDA Methylation_Array tumor CPT0226570013 203561450048_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 481fc97f-42a5-449c-9955-fc42cc4fa701 a0819451615ec944309051fdc28678ef {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor"} -C3N-03007.MethArray.Red.T C3N-03007 PDA Methylation_Array tumor CPT0226570013 203561450048_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 7483daa9-c1b1-4295-8211-fadfaf1f529c a39ec0a778ebf2c61b0d92cfd8941155 {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor"} -C3N-03007.miRNA-Seq.S13_L003_R1.T C3N-03007 PDA miRNA-Seq tumor CPT0226570010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAAAAG_S13_L003_R1_001.unaln.bam 278175739 BAM S13_L003_R1 unaligned CPTAC3 5c651f4a-468a-4a8f-bbcf-8f2420b371fe a7ee02eb2b8265329d970afb8a3d39ee {"aliquot_tag": "ALQ_ec3239ee", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03007.miRNA-Seq.T.hg38 C3N-03007 PDA miRNA-Seq tumor CPT0226570010 af81d130-156c-49b8-9f30-a388d635207e_mirnaseq_gdc_realn.bam 310069264 BAM harmonized CPTAC3 136bfbc4-ef3f-4010-b8ca-1ddeaa1fad7d 640991e8b3fa9c3d45b9c71a4697506a {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor"} -C3N-03007.RNA-Seq.chimeric.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.chimeric.gdc_realn.bam 40934806 BAM chimeric harmonized CPTAC3 79b78562-731f-4875-b89a-6f56d579dd82 a8492f69967009b49e5ce5381c2bd309 {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor"} -C3N-03007.RNA-Seq.genomic.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.genomic.gdc_realn.bam 7527753144 BAM genomic harmonized CPTAC3 34cd1a8a-2d7f-48f6-a876-1c791c43d260 26fcb90368c1a0b5e2016d349c9efc95 {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor"} -C3N-03007.RNA-Seq.S23_L007_R1.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R1_001.fastq.gz 3614116156 FASTQ S23_L007_R1 unaligned CPTAC3 38fb3cc4-43a4-4536-8370-94a0ab4538cf d892d6b98224dd4e2cb41a2f7912270e {"aliquot_tag": "ALQ_ec3239ee", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03007.RNA-Seq.S23_L007_R2.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R2_001.fastq.gz 3904736055 FASTQ S23_L007_R2 unaligned CPTAC3 660046b6-72a3-4f00-9bec-bbc666a277fe 32bf3b3d662a70c7c0807766999edf17 {"aliquot_tag": "ALQ_ec3239ee", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03007.RNA-Seq.transcriptome.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.transcriptome.gdc_realn.bam 11064023979 BAM transcriptome harmonized CPTAC3 3e7a820b-cfc0-4061-8a22-b306896a920f 06a72f990824e588d2ccbb379075989b {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor"} -C3N-03007.WGS.N C3N-03007 PDA WGS blood_normal CPT0226590002 CPT0226590002.WholeGenome.RP-1303.bam 90965485437 BAM aligned CPTAC3 bea3a2cb-4ad8-43b3-8789-be4559224df8 b2785d00f753988212f0c86267397397 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03007.WGS.N.hg38 C3N-03007 PDA WGS blood_normal CPT0226590002 06feccc3-afda-4eb1-91bc-ae59081d8339_wgs_gdc_realn.bam 132571791273 BAM harmonized CPTAC3 9e54b6e9-adfe-423a-b41f-693f408088e5 9acb00594c1f66135f5a0b63be167e85 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03007.WGS.T C3N-03007 PDA WGS tumor CPT0226570013 CPT0226570013.WholeGenome.RP-1303.PDO-18613.bam 106533235357 BAM aligned CPTAC3 ae20451e-79a0-47d3-9990-c58c3f281f2f ba9c88763ee1749677821720863d9632 {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor"} -C3N-03007.WGS.T.hg38 C3N-03007 PDA WGS tumor CPT0226570013 be92ef4b-77d1-4001-854e-a2db4c19d555_wgs_gdc_realn.bam 156628867960 BAM harmonized CPTAC3 0fc68ef3-86b8-4605-8f3b-2004e6f4c8a9 6be17a1772189c42d0d5f4d1e5a5eaa6 {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor"} -C3N-03007.WXS.N C3N-03007 PDA WXS blood_normal CPT0226590002 CPT0226590002.WholeExome.RP-1303.bam 23823988263 BAM aligned CPTAC3 5969cb1f-44cc-4781-b8df-caa91d0ed0b7 4547fa63ed7fdad99a8bb86e06fbd9e4 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03007.WXS.N.hg38 C3N-03007 PDA WXS blood_normal CPT0226590002 06feccc3-afda-4eb1-91bc-ae59081d8339_wxs_gdc_realn.bam 32713150958 BAM harmonized CPTAC3 8bafb618-9fca-461d-9062-e10478b3b002 d17e8e8cb25bd82f9088ec4897f75834 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03007.WXS.T C3N-03007 PDA WXS tumor CPT0226570013 CPT0226570013.WholeExome.RP-1303.bam 22369444455 BAM aligned CPTAC3 830b19a1-0d82-4c9b-bc27-6b72d31d561d 86de098377b0d5c2a61584d753f3ebad {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor"} -C3N-03007.WXS.T.hg38 C3N-03007 PDA WXS tumor CPT0226570013 be92ef4b-77d1-4001-854e-a2db4c19d555_wxs_gdc_realn.bam 30168476437 BAM harmonized CPTAC3 4881b28d-d851-424d-9c0e-5c72fa48a062 54d50ead246254598b6eb225aa62a42e {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor"} -C3N-03008.MethArray.Green.T C3N-03008 HNSCC Methylation_Array tumor CPT0245010009 203219640047_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 00097212-12fe-4c8b-b79e-45eef5768d5b 9b69f5d7f2290f8b0b74c75449e377fa {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor"} -C3N-03008.MethArray.Red.T C3N-03008 HNSCC Methylation_Array tumor CPT0245010009 203219640047_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 51af3f70-d83e-4760-bb4a-20f1462a265d 63b9d6040b3f5efcdfdc995ff6bbca76 {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor"} -C3N-03008.miRNA-Seq.S18_L005_R1.T C3N-03008 HNSCC miRNA-Seq tumor CPT0245010006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L005_R1_001.unaln.bam 236954204 BAM S18_L005_R1 unaligned CPTAC3 54d0c9ee-c935-4690-8217-3d2014d8e5dc 5941a653eea0306f48ca8e21cd0774f9 {"aliquot_tag": "ALQ_3440da93", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03008.miRNA-Seq.T.hg38 C3N-03008 HNSCC miRNA-Seq tumor CPT0245010006 ccfa82a2-b9db-4804-a14b-273a7859ee90_mirnaseq_gdc_realn.bam 265700251 BAM harmonized CPTAC3 c692350f-19b7-4eeb-995c-c6652722bf2b cbf0ae1296b309c66ed42f2a556c8ad3 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.chimeric.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.chimeric.gdc_realn.bam 27987332 BAM chimeric harmonized CPTAC3 de0ae0e8-fce1-45bb-9b3c-de8ff9f87782 fea522a51882c4b39f16b32728c03f10 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.chimeric.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.chimeric.gdc_realn.bam 149384848 BAM chimeric harmonized CPTAC3 900c73a2-de11-4c0f-bbc6-25f3ae4cafc5 7e6108de83f51de087dbfc9132f925a6 {"aliquot_tag": "ALQ_5d38e493", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.genomic.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.genomic.gdc_realn.bam 7753794291 BAM genomic harmonized CPTAC3 38589697-693c-42db-8a9c-0e17f0f64920 bd1695c02e4249e0dae2e74a17d17c29 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.genomic.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.genomic.gdc_realn.bam 7695246783 BAM genomic harmonized CPTAC3 44565a7e-1573-4f44-86f4-9fb99f08dafc b17a7cdb9db5a678a9f82c88a8f4fc5b {"aliquot_tag": "ALQ_5d38e493", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.S30_L007_R1.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R1_001.fastq.gz 3587409141 FASTQ S30_L007_R1 unaligned CPTAC3 0e8ce9ca-95c9-4acc-81e1-22122cb29d9e e302a9a0583d2705d1b3e562f4abdd34 {"aliquot_tag": "ALQ_3440da93", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.S30_L007_R2.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R2_001.fastq.gz 4115598796 FASTQ S30_L007_R2 unaligned CPTAC3 89e20074-6f16-4241-a848-988bf99d0aae 0171f56977fe96d3590f7f6905e27b60 {"aliquot_tag": "ALQ_3440da93", "sample": "S30", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.S31_R1.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R1_001.fastq.gz 4982943277 FASTQ S31_R1 unaligned CPTAC3 8ca6d9ed-a4b3-487e-b876-f64687a85ce7 1f2a1852982a506822cc9a3850a1848d {"aliquot_tag": "ALQ_5d38e493", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.S31_R2.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R2_001.fastq.gz 5139794458 FASTQ S31_R2 unaligned CPTAC3 e8d8e7e6-8114-4970-ad66-fc1078ba5cac 2f447edad95a036baf3a8025e270b510 {"aliquot_tag": "ALQ_5d38e493", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.transcriptome.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.transcriptome.gdc_realn.bam 11551834441 BAM transcriptome harmonized CPTAC3 40a3842f-462f-491b-a60f-2fe084448db3 26515b341384ec06db0d8a351db0bd43 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor"} -C3N-03008.RNA-Seq.transcriptome.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.transcriptome.gdc_realn.bam 4515465903 BAM transcriptome harmonized CPTAC3 a12aa71c-d071-4790-a31c-8fcdf15fd36a a1c154de6260375b136d569e9070b606 {"aliquot_tag": "ALQ_5d38e493", "gdc_sample_type": "Primary Tumor"} -C3N-03008.WGS.N C3N-03008 HNSCC WGS blood_normal CPT0245050002 CPT0245050002.WholeGenome.RP-1303.bam 73019043461 BAM aligned CPTAC3 4934bd05-d9ee-4aae-99e8-556fbf7c50ca 85122749f63c1d0b45a8e0a39b4ca665 {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03008.WGS.N.hg38 C3N-03008 HNSCC WGS blood_normal CPT0245050002 53a06935-8741-489c-96b7-746a3038c7aa_wgs_gdc_realn.bam 106357939544 BAM harmonized CPTAC3 5a516ede-33b0-42b4-a6c2-8b82ba9ed60b c2a97e5dffc410d144a8c8899322cf1b {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03008.WGS.T C3N-03008 HNSCC WGS tumor CPT0245010009 CPT0245010009.WholeGenome.RP-1303.bam 75485035554 BAM aligned CPTAC3 f0b6a63f-ed37-4abf-a460-dd791c878255 78db113c492dea4616e79fc6a8c34da8 {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor"} -C3N-03008.WGS.T.hg38 C3N-03008 HNSCC WGS tumor CPT0245010009 b48e2290-8837-4918-9e64-4b74b5ff0a2f_wgs_gdc_realn.bam 110420525336 BAM harmonized CPTAC3 6c0d652a-0208-4b5f-bf52-5f64dc1067a9 257278fc3159a314a4d3f6048d1baa6a {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor"} -C3N-03008.WXS.N C3N-03008 HNSCC WXS blood_normal CPT0245050002 CPT0245050002.WholeExome.RP-1303.bam 30477202265 BAM aligned CPTAC3 2c337492-7a47-45c0-a57d-128c28426cc4 813905e7dd52af713736b9252ccff17f {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03008.WXS.N.hg38 C3N-03008 HNSCC WXS blood_normal CPT0245050002 53a06935-8741-489c-96b7-746a3038c7aa_wxs_gdc_realn.bam 42036879160 BAM harmonized CPTAC3 a3a70eb9-a1c8-41b3-963b-2809fbbd6a23 166d362df5d4ba1a9f836df464f20df7 {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03008.WXS.T C3N-03008 HNSCC WXS tumor CPT0245010009 CPT0245010009.WholeExome.RP-1303.bam 23803753239 BAM aligned CPTAC3 465a357c-81f6-41d6-b0ff-21b748731b9c 078732edbee0bff081292b68b222b0f7 {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor"} -C3N-03008.WXS.T.hg38 C3N-03008 HNSCC WXS tumor CPT0245010009 b48e2290-8837-4918-9e64-4b74b5ff0a2f_wxs_gdc_realn.bam 32617838404 BAM harmonized CPTAC3 9df1aa2b-46cf-40ff-8dea-64df2bf41248 9b553b29a463f547f45a3de21e5de30f {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor"} -C3N-03009.MethArray.Green.T C3N-03009 HNSCC Methylation_Array tumor CPT0245060010 203281980258_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1977e2d1-ac93-442d-b27f-672aea70b08b e20ba946b77e805914e8b200bd5d4a0b {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor"} -C3N-03009.MethArray.Red.T C3N-03009 HNSCC Methylation_Array tumor CPT0245060010 203281980258_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 d6b1e5bb-125b-4a33-9c21-d0a5232cc33a 5073fc16e64ff94b0b2bbdc41015afa0 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor"} -C3N-03009.miRNA-Seq.S19_L005_R1.T C3N-03009 HNSCC miRNA-Seq tumor CPT0245060007 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L005_R1_001.unaln.bam 234912586 BAM S19_L005_R1 unaligned CPTAC3 b5229a46-623d-49d0-ab0f-52386b87cb8b 301824079e6c9ecfe69a84c5e8490241 {"aliquot_tag": "ALQ_f1673615", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03009.miRNA-Seq.T.hg38 C3N-03009 HNSCC miRNA-Seq tumor CPT0245060007 3fe0b818-da8b-48e8-988e-2f30b7e567ae_mirnaseq_gdc_realn.bam 265313300 BAM harmonized CPTAC3 39689338-99da-4b39-9a6a-d42466c55a01 4e024aeb3560b652bc96118e0628f3f9 {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor"} -C3N-03009.RNA-Seq.chimeric.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.chimeric.gdc_realn.bam 41489644 BAM chimeric harmonized CPTAC3 412f735f-ce32-474a-92f2-9b884a2f235a 0fce858fe05f4b9466a9c4ea53ab69cd {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor"} -C3N-03009.RNA-Seq.genomic.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.genomic.gdc_realn.bam 9752931356 BAM genomic harmonized CPTAC3 19c6bd74-3bd3-4a9b-a5cb-0af4c74af768 90308caa58fe9b4041628f687397d2f1 {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor"} -C3N-03009.RNA-Seq.S31_L007_R1.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R1_001.fastq.gz 4512753317 FASTQ S31_L007_R1 unaligned CPTAC3 c354fbe3-7b40-4676-a5dc-3fe883b88172 323341e8adae61706608eed64e5bc2fc {"aliquot_tag": "ALQ_f1673615", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03009.RNA-Seq.S31_L007_R2.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R2_001.fastq.gz 5041716224 FASTQ S31_L007_R2 unaligned CPTAC3 4a882e0c-9422-4179-8107-7021717d674a e65153c5abecf65626a7e6a5f4b06404 {"aliquot_tag": "ALQ_f1673615", "sample": "S31", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03009.RNA-Seq.transcriptome.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.transcriptome.gdc_realn.bam 12710443574 BAM transcriptome harmonized CPTAC3 d7533ea7-145d-453b-b9fa-cc5377c3e043 dc775e9cf314cd0dfcaf62e777ae59da {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor"} -C3N-03009.WGS.N C3N-03009 HNSCC WGS blood_normal CPT0245120002 CPT0245120002.WholeGenome.RP-1303.bam 67890003502 BAM aligned CPTAC3 d232340d-265a-4cd9-b70c-11f40a3e0bd2 2bacce0b6ee3a8715b607b72af573716 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-03009.WGS.N.hg38 C3N-03009 HNSCC WGS blood_normal CPT0245120002 37895c79-b9a4-477b-944f-4b6bc6ba35fa_wgs_gdc_realn.bam 98582346407 BAM harmonized CPTAC3 e9de8143-0b87-47d8-bded-e64cc9dcf296 0d0c1bb5dfc741f47563c19449d8d5c3 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-03009.WGS.T C3N-03009 HNSCC WGS tumor CPT0245060010 CPT0245060010.WholeGenome.RP-1303.bam 73611970825 BAM aligned CPTAC3 99452de0-5920-439d-95fa-2db8cbb8dfb2 58307e31e468905d6d2b652af9e6a518 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor"} -C3N-03009.WGS.T.hg38 C3N-03009 HNSCC WGS tumor CPT0245060010 90145130-3310-45db-88ae-b35e80588501_wgs_gdc_realn.bam 107459152965 BAM harmonized CPTAC3 246fa96d-c170-4265-a036-5b8ec6063d47 f024e3955c60a205b1655f635c576f98 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor"} -C3N-03009.WXS.N C3N-03009 HNSCC WXS blood_normal CPT0245120002 CPT0245120002.WholeExome.RP-1303.bam 26873008655 BAM aligned CPTAC3 48969068-4704-467a-9dc1-896afb12c6d3 25eca21876027031d22720093aba9271 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-03009.WXS.N.hg38 C3N-03009 HNSCC WXS blood_normal CPT0245120002 37895c79-b9a4-477b-944f-4b6bc6ba35fa_wxs_gdc_realn.bam 36400661054 BAM harmonized CPTAC3 49002442-f283-4224-badd-731a5f3b230e 01b8a0aa11794b236a00074d732f2438 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-03009.WXS.T C3N-03009 HNSCC WXS tumor CPT0245060010 CPT0245060010.WholeExome.RP-1303.bam 25216058571 BAM aligned CPTAC3 84475090-95f9-4eb5-88b6-ced8e94c36c1 95dc1fe8c728e5538305349e5fafcaf6 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor"} -C3N-03009.WXS.T.hg38 C3N-03009 HNSCC WXS tumor CPT0245060010 90145130-3310-45db-88ae-b35e80588501_wxs_gdc_realn.bam 35028625570 BAM harmonized CPTAC3 bc1e1a2d-e9f9-4003-9d15-361dd2b70006 8d79517e8791041c5b653027c7eb8b0b {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor"} -C3N-03011.MethArray.Green.T C3N-03011 HNSCC Methylation_Array tumor CPT0226250007 203271750047_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1a6ecc31-9c6a-4136-8e40-97e8bc2a0129 5712dd713f3f72ca7590500833b91c6c {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor"} -C3N-03011.MethArray.Red.T C3N-03011 HNSCC Methylation_Array tumor CPT0226250007 203271750047_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 2a6c33a2-6eee-4c7b-bff1-0ce4bd0912d0 b17d250a54950622dc5a6d55d8e968b6 {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor"} -C3N-03011.miRNA-Seq.S46_L004_R1.T C3N-03011 HNSCC miRNA-Seq tumor CPT0226250010 190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L004_R1_001.unaln.bam 305656246 BAM S46_L004_R1 unaligned CPTAC3 645ded41-f98a-462b-a73d-48d66723966e 34daa5d6010724e0877eddfeac8e8d98 {"aliquot_tag": "ALQ_8bf75a36", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03011.miRNA-Seq.T.hg38 C3N-03011 HNSCC miRNA-Seq tumor CPT0226250010 e7f427f6-091d-431b-945f-12851033aa2e_mirnaseq_gdc_realn.bam 337309315 BAM harmonized CPTAC3 b4dd6558-52bc-468d-aa1a-e14faf364dcd 99b91e6a7ac281e870cca97c4899e95c {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor"} -C3N-03011.RNA-Seq.chimeric.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.chimeric.gdc_realn.bam 173068997 BAM chimeric harmonized CPTAC3 1eaba20e-a1fc-4667-afe9-9fd369c53c4c 8692aeb0b5cb4f553b06124515402a19 {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor"} -C3N-03011.RNA-Seq.genomic.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.genomic.gdc_realn.bam 8793820542 BAM genomic harmonized CPTAC3 84bfafc7-d3f6-4b63-a34a-20d1ecd93802 ccf53cb58793e344502a5d91e1e2bbdb {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor"} -C3N-03011.RNA-Seq.S27_L007_R1.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R1_001.fastq.gz 4224615040 FASTQ S27_L007_R1 unaligned CPTAC3 bb7fe347-537b-46b3-b300-ea9d775f716a a235337a5262643de52c065b8d94b112 {"aliquot_tag": "ALQ_8bf75a36", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03011.RNA-Seq.S27_L007_R2.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R2_001.fastq.gz 4739667298 FASTQ S27_L007_R2 unaligned CPTAC3 7b932eed-671e-4b27-89df-8e0357a925c1 9b2b764661a776b14e36b83980eaf75a {"aliquot_tag": "ALQ_8bf75a36", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03011.RNA-Seq.transcriptome.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.transcriptome.gdc_realn.bam 11011905177 BAM transcriptome harmonized CPTAC3 afac5f5a-fb19-4a4f-9d43-e469b3f023ed 3d19d7eff86f85b94d2119f5f3770eb3 {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor"} -C3N-03011.WGS.N C3N-03011 HNSCC WGS blood_normal CPT0226330002 CPT0226330002.WholeGenome.RP-1303.bam 63021848996 BAM aligned CPTAC3 1fe8a988-3b5e-4c6e-ae78-206f6b34eb53 85e7657fafb58c064bce39a2226b41b3 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03011.WGS.N.hg38 C3N-03011 HNSCC WGS blood_normal CPT0226330002 aef40198-603b-421a-a1e1-e4522062473d_wgs_gdc_realn.bam 89998351315 BAM harmonized CPTAC3 0d675519-2a71-4a42-a87d-3a5713992399 d3819146d0821bcf2b128a8f25c53314 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03011.WGS.T C3N-03011 HNSCC WGS tumor CPT0226250007 CPT0226250007.WholeGenome.RP-1303.bam 65017126391 BAM aligned CPTAC3 e8330624-44ad-494b-ab3d-c26d8d437370 812d088719896fa52bc3a8d5d0c63501 {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor"} -C3N-03011.WGS.T.hg38 C3N-03011 HNSCC WGS tumor CPT0226250007 50460a1e-b6e3-48fe-a098-d3d5e11446af_wgs_gdc_realn.bam 96545361089 BAM harmonized CPTAC3 a2ec9f78-bcbc-4303-b34e-5369637d40b2 07d8229db29e06fdfdc19f3f01b544ee {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor"} -C3N-03011.WXS.N C3N-03011 HNSCC WXS blood_normal CPT0226330002 CPT0226330002.WholeExome.RP-1303.bam 19961835704 BAM aligned CPTAC3 35bb8595-062c-4a42-adc2-af3b52475d9a 64160ee28d7753f40a2c1c651ef1d1d0 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03011.WXS.N.hg38 C3N-03011 HNSCC WXS blood_normal CPT0226330002 aef40198-603b-421a-a1e1-e4522062473d_wxs_gdc_realn.bam 27686451463 BAM harmonized CPTAC3 58ab19b2-abf2-46fa-ba8c-f86974c96bfa 9ea62bff1455836ea71b9eec90e9c377 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03011.WXS.T C3N-03011 HNSCC WXS tumor CPT0226250007 CPT0226250007.WholeExome.RP-1303.bam 22288219531 BAM aligned CPTAC3 175e55a7-54a5-485f-92d4-9cfb2b8f3c46 091de9fd517f310f200d639e92c9fc8c {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor"} -C3N-03011.WXS.T.hg38 C3N-03011 HNSCC WXS tumor CPT0226250007 50460a1e-b6e3-48fe-a098-d3d5e11446af_wxs_gdc_realn.bam 30806756634 BAM harmonized CPTAC3 957b7c21-5430-4197-9d20-acdc442567ad 3cbb08d6946b6e9527c0e8bf4c047421 {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor"} -C3N-03012.MethArray.Green.T C3N-03012 HNSCC Methylation_Array tumor CPT0226340006 203271750010_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 188a1181-ea37-45d8-88c1-e74cf10411f6 f41926f7104e8755b9ab7543f651f1d0 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor"} -C3N-03012.MethArray.Red.T C3N-03012 HNSCC Methylation_Array tumor CPT0226340006 203271750010_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 eea1f8bb-5005-4afd-913c-a8995ecc51a8 7d9fb5ed97c6aedeebfdc2dbef965cf1 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor"} -C3N-03012.miRNA-Seq.S47_L004_R1.T C3N-03012 HNSCC miRNA-Seq tumor CPT0226340009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L004_R1_001.unaln.bam 245792823 BAM S47_L004_R1 unaligned CPTAC3 1d1b652b-7d8c-4b28-8b97-f47754afa7d1 c59b8cc4d2f6142584a9ed973a89773a {"aliquot_tag": "ALQ_1d0c29c6", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03012.miRNA-Seq.T.hg38 C3N-03012 HNSCC miRNA-Seq tumor CPT0226340009 b33ee650-4a8c-4265-8db9-b20902b90b4c_mirnaseq_gdc_realn.bam 275644427 BAM harmonized CPTAC3 f7284c1b-75ec-4412-aa25-536b8c67e7ce 5e921b1c609d363bffdfff5ce6993733 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.chimeric.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.chimeric.gdc_realn.bam 114614364 BAM chimeric harmonized CPTAC3 7d601f82-93a1-49fe-845a-df4aabf56ce4 f1bbb75341a2a5b0909281c177b80057 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.chimeric.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.chimeric.gdc_realn.bam 151799251 BAM chimeric harmonized CPTAC3 bd2fb781-f156-4637-aee9-1e77f4195dcb 4264bc7c4e0b3e80084af08705724163 {"aliquot_tag": "ALQ_e6ccbf8d", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.genomic.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.genomic.gdc_realn.bam 8039228848 BAM genomic harmonized CPTAC3 a9aec893-5323-49e1-a62b-10415ee936d8 cf4c26380afc717d1b2c8d047c01d638 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.genomic.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.genomic.gdc_realn.bam 10327327140 BAM genomic harmonized CPTAC3 59bb04fc-5b35-4493-a49f-8629e00a46d4 ab70dd034f6931713d9eeadf91cc94da {"aliquot_tag": "ALQ_e6ccbf8d", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.S26_L007_R1.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R1_001.fastq.gz 3862676144 FASTQ S26_L007_R1 unaligned CPTAC3 7b8853a3-68e3-423b-9a17-e79552c94df5 66dfd71d25f682310b4d933699bceead {"aliquot_tag": "ALQ_1d0c29c6", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.S26_L007_R2.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R2_001.fastq.gz 4306540242 FASTQ S26_L007_R2 unaligned CPTAC3 eec11126-0d63-40cf-80b0-eac8fd03223f 5f8a0044760ac0c8c417b2d9b5183e06 {"aliquot_tag": "ALQ_1d0c29c6", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.S39_R1.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R1_001.fastq.gz 6530123630 FASTQ S39_R1 unaligned CPTAC3 599c4cf8-e153-4ff3-b1d4-0a34d09888f9 a3718daff1eeb2db0908108ed3835109 {"aliquot_tag": "ALQ_e6ccbf8d", "sample": "S39", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.S39_R2.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R2_001.fastq.gz 6736363842 FASTQ S39_R2 unaligned CPTAC3 00d8164d-181a-4bc8-9b44-bac9de3dc8a4 e3b33b4b4eb4b8d6f9f356b3ea980334 {"aliquot_tag": "ALQ_e6ccbf8d", "sample": "S39", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.transcriptome.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.transcriptome.gdc_realn.bam 12118738451 BAM transcriptome harmonized CPTAC3 2ec5a42e-0b0a-4106-a513-85b680695b41 47ebf792360e069e75ad5cffd52700e6 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor"} -C3N-03012.RNA-Seq.transcriptome.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.transcriptome.gdc_realn.bam 7466501110 BAM transcriptome harmonized CPTAC3 55971f64-9bea-44f8-ada4-d1b8edbcaede 70e7bf6d5969f2fc478ff498ea457a23 {"aliquot_tag": "ALQ_e6ccbf8d", "gdc_sample_type": "Primary Tumor"} -C3N-03012.WGS.N C3N-03012 HNSCC WGS blood_normal CPT0226380002 CPT0226380002.WholeGenome.RP-1303.bam 93790005406 BAM aligned CPTAC3 4b27cd8e-5873-4157-b200-ab2001c1cba6 dece6010de2d96bb08a9dc42a266ab2b {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03012.WGS.N.hg38 C3N-03012 HNSCC WGS blood_normal CPT0226380002 ebb5f809-802b-4bf2-a197-f89d4f4b68d8_wgs_gdc_realn.bam 137420742281 BAM harmonized CPTAC3 4504d055-56b9-488f-8a26-3f3332621133 59092809b59557bde07ea9d5857814c0 {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03012.WGS.T C3N-03012 HNSCC WGS tumor CPT0226340006 CPT0226340006.WholeGenome.RP-1303.bam 67534862404 BAM aligned CPTAC3 fecb45fd-8f3d-4e1e-bac6-c6abbe2b447b 1e26bda8bd3a61e76fe612d7d1ca8e07 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor"} -C3N-03012.WGS.T.hg38 C3N-03012 HNSCC WGS tumor CPT0226340006 f459f63f-b4a7-4e6c-a116-0370573db3f9_wgs_gdc_realn.bam 99492082319 BAM harmonized CPTAC3 296f1f58-b49b-43bb-89f2-65a92fddd987 2b5b57f768781cfc9e1363179dd053b8 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor"} -C3N-03012.WXS.N C3N-03012 HNSCC WXS blood_normal CPT0226380002 CPT0226380002.WholeExome.RP-1303.bam 24974821386 BAM aligned CPTAC3 042c6d90-50ad-44ca-af49-ecab8ea93797 382e3f2cc810581c8a90e094437b7fba {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03012.WXS.N.hg38 C3N-03012 HNSCC WXS blood_normal CPT0226380002 ebb5f809-802b-4bf2-a197-f89d4f4b68d8_wxs_gdc_realn.bam 34090459435 BAM harmonized CPTAC3 9ae5fc89-f527-4314-a50e-6335a0f2721f 338c6d370da3fbf85dcd3d5ab993b359 {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03012.WXS.T C3N-03012 HNSCC WXS tumor CPT0226340006 CPT0226340006.WholeExome.RP-1303.bam 32746111774 BAM aligned CPTAC3 4fb5427b-5030-4760-b158-8ceda894e5cd 53c2da5e7a8e285c7011e1b3c6e0f98e {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor"} -C3N-03012.WXS.T.hg38 C3N-03012 HNSCC WXS tumor CPT0226340006 f459f63f-b4a7-4e6c-a116-0370573db3f9_wxs_gdc_realn.bam 44219749813 BAM harmonized CPTAC3 18431365-1cc1-493a-b7ca-4f68040b8b5d ef8628fc6e5cb597002cb871a6cb40ee {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor"} -C3N-03013.MethArray.Green.T C3N-03013 HNSCC Methylation_Array tumor CPT0245130009 203220070165_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a755216a-0d83-4675-92ad-4b67037f7e2b 26c268a876af0b60dcd7afb6f26297f2 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor"} -C3N-03013.MethArray.Red.T C3N-03013 HNSCC Methylation_Array tumor CPT0245130009 203220070165_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 9a0b1979-73ef-40fb-a0a4-bf7d28ec1578 5264463d2e4c420623fdc21d43094b9f {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor"} -C3N-03013.miRNA-Seq.S20_L005_R1.T C3N-03013 HNSCC miRNA-Seq tumor CPT0245130006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L005_R1_001.unaln.bam 312232766 BAM S20_L005_R1 unaligned CPTAC3 32198d13-8711-4e90-b60d-f55ddc222b89 227a1375714acb2737980ea0d3d8605b {"aliquot_tag": "ALQ_85dc5a56", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03013.miRNA-Seq.T.hg38 C3N-03013 HNSCC miRNA-Seq tumor CPT0245130006 d895e6e0-7c21-46e6-acf4-a294b1731269_mirnaseq_gdc_realn.bam 344820238 BAM harmonized CPTAC3 d6bb07f5-805e-46c3-9783-a983e2704caa 4d337536d67a4ad0187c8dc6204c58a8 {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.chimeric.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.chimeric.gdc_realn.bam 38885348 BAM chimeric harmonized CPTAC3 3b02cc94-2d50-4a45-b609-4389573950ec cfa26d9e7593a410aa5bf372f901bba8 {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.chimeric.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.chimeric.gdc_realn.bam 137250678 BAM chimeric harmonized CPTAC3 551e487e-dd1e-4c76-bf3e-bafd58d19bad e35147dae10ac8b3dc1b994abab3cbf2 {"aliquot_tag": "ALQ_698c4a2d", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.genomic.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.genomic.gdc_realn.bam 9077154671 BAM genomic harmonized CPTAC3 b20b2d42-0573-4f9b-86da-9a05ffea5c27 7fa4b16f8e70c23efcd6645f0ae456e5 {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.genomic.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.genomic.gdc_realn.bam 7050867541 BAM genomic harmonized CPTAC3 23e85add-cbe5-4f2f-8ec0-5d1948551c9d b552ddd276e8f4ec6863496f0cca7113 {"aliquot_tag": "ALQ_698c4a2d", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.S32_L007_R1.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R1_001.fastq.gz 3926269896 FASTQ S32_L007_R1 unaligned CPTAC3 29dc40f9-75ae-46bb-a172-75cc64acebe9 025d8f5da97924ad3f2aa8c1d3db4765 {"aliquot_tag": "ALQ_85dc5a56", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.S32_L007_R2.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R2_001.fastq.gz 4488402215 FASTQ S32_L007_R2 unaligned CPTAC3 a08cd494-e2db-4bc1-9a86-dd02f4a262c1 b0543fffdea94f0f3ca8b03e8f6c3d50 {"aliquot_tag": "ALQ_85dc5a56", "sample": "S32", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.S67_R1.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R1_001.fastq.gz 4826217695 FASTQ S67_R1 unaligned CPTAC3 65b34fe6-430a-44d4-9762-f30ae63d6a1c e075ec41ce3b7e8f3f11258f25d7b3ea {"aliquot_tag": "ALQ_698c4a2d", "sample": "S67", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.S67_R2.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R2_001.fastq.gz 4972986140 FASTQ S67_R2 unaligned CPTAC3 b14bc543-55fc-4117-95ee-51147d0745b4 6421ff8113569a8972c35a6ded802949 {"aliquot_tag": "ALQ_698c4a2d", "sample": "S67", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.transcriptome.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.transcriptome.gdc_realn.bam 11290210726 BAM transcriptome harmonized CPTAC3 f87af881-1a80-48fc-b414-69372fa466b0 e9d9aa4adc80340df7b909f1f189069a {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor"} -C3N-03013.RNA-Seq.transcriptome.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.transcriptome.gdc_realn.bam 5634550585 BAM transcriptome harmonized CPTAC3 54836e0b-18d1-4d15-b9bf-573013c4d28d 75fc0ec44dd9c2576c762aabf70dcc57 {"aliquot_tag": "ALQ_698c4a2d", "gdc_sample_type": "Primary Tumor"} -C3N-03013.WGS.N C3N-03013 HNSCC WGS blood_normal CPT0245170002 CPT0245170002.WholeGenome.RP-1303.bam 69588309348 BAM aligned CPTAC3 e9835e48-a5f3-47d8-9bcf-814221cfbef1 53016add9d6b82c7b82102c2afbc4249 {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03013.WGS.N.hg38 C3N-03013 HNSCC WGS blood_normal CPT0245170002 749a385c-3923-4592-af01-602ef6634c09_wgs_gdc_realn.bam 101852858850 BAM harmonized CPTAC3 f2964a4d-eb71-4944-b53b-0cc98448564c 67ca934792a4f63cd43ddfc678c35514 {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03013.WGS.T C3N-03013 HNSCC WGS tumor CPT0245130009 CPT0245130009.WholeGenome.RP-1303.bam 63655208400 BAM aligned CPTAC3 beaec16a-c3c5-47fb-90d9-308a6879eaef dfd3062cf5bea2b4fd3220c486d9b1c4 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor"} -C3N-03013.WGS.T.hg38 C3N-03013 HNSCC WGS tumor CPT0245130009 bda9b011-69a7-4e2d-a2a8-76f16043373f_wgs_gdc_realn.bam 92389657455 BAM harmonized CPTAC3 84a9c67c-89f8-4d60-927a-de6491bff5bc baba1d5edc5d737bff2cf52814b4cb4c {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor"} -C3N-03013.WXS.N C3N-03013 HNSCC WXS blood_normal CPT0245170002 CPT0245170002.WholeExome.RP-1303.bam 25734084669 BAM aligned CPTAC3 849e65d3-d27e-4dcd-8068-798c0b957628 6faead2e589e6abf01a7e601cb13d0c5 {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03013.WXS.N.hg38 C3N-03013 HNSCC WXS blood_normal CPT0245170002 749a385c-3923-4592-af01-602ef6634c09_wxs_gdc_realn.bam 34679537867 BAM harmonized CPTAC3 6fe75f44-dce3-4d1f-8e49-101661553d6c 480992b92bced7103d916af76b433fee {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03013.WXS.T C3N-03013 HNSCC WXS tumor CPT0245130009 CPT0245130009.WholeExome.RP-1303.bam 39088207508 BAM aligned CPTAC3 273d8220-d3f1-4ce0-8e06-0f11f0bbb0a9 00e72c1caa04c3a7a28e66361d8afb18 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor"} -C3N-03013.WXS.T.hg38 C3N-03013 HNSCC WXS tumor CPT0245130009 bda9b011-69a7-4e2d-a2a8-76f16043373f_wxs_gdc_realn.bam 54944087921 BAM harmonized CPTAC3 ab9a4185-ec78-42a2-9271-6dc03d527829 dea54e469b72637febea82a86be2ed77 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor"} -C3N-03015.MethArray.Green.A C3N-03015 HNSCC Methylation_Array tissue_normal CPT0245190009 203271750083_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2d6e9186-0f43-45f7-9770-a478c24fcf73 cec11717e07ce7e08d1a63a2f2bff257 {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.MethArray.Green.T C3N-03015 HNSCC Methylation_Array tumor CPT0245180009 203220070154_R08C01_Grn.idat 13676207 IDAT Green NA CPTAC3 a250f58d-f32f-445a-a88e-d7d22f349a41 36d23941035fd601b4c828f4f0403724 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor"} -C3N-03015.MethArray.Red.A C3N-03015 HNSCC Methylation_Array tissue_normal CPT0245190009 203271750083_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 cd250ecb-4dcb-4419-a4f6-6ac7f5761488 0e6046be42ceac8ddbc22437c35f5f57 {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.MethArray.Red.T C3N-03015 HNSCC Methylation_Array tumor CPT0245180009 203220070154_R08C01_Red.idat 13676207 IDAT Red NA CPTAC3 0049cada-ffe1-47a7-9bad-6e821ccf511c 6bdc689e5bb6da741788b0e34b6c437c {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor"} -C3N-03015.miRNA-Seq.A.hg38 C3N-03015 HNSCC miRNA-Seq tissue_normal CPT0245190006 5d38cdf6-6db7-47e9-bba0-33b08daa283a_mirnaseq_gdc_realn.bam 351400448 BAM harmonized CPTAC3 0d0dffa4-caf1-477b-a3b5-b1c631131c75 92e095e1c02812f1b8b75e5e98b53bdb {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.miRNA-Seq.S21_L005_R1.T C3N-03015 HNSCC miRNA-Seq tumor CPT0245180006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L005_R1_001.unaln.bam 171946593 BAM S21_L005_R1 unaligned CPTAC3 adeb0107-ab82-4b58-8918-869af38258d3 b8f554ebc9ee2b347460b51d6d9dc0cd {"aliquot_tag": "ALQ_f20c6b47", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03015.miRNA-Seq.S36_L006_R1.A C3N-03015 HNSCC miRNA-Seq tissue_normal CPT0245190006 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L006_R1_001.unaln.bam 311417847 BAM S36_L006_R1 unaligned CPTAC3 dbbf34ce-b31e-4508-82b0-055356c23582 b4eed39034b3371aa89e2c5bde252396 {"aliquot_tag": "ALQ_cf6c42f7", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.miRNA-Seq.T.hg38 C3N-03015 HNSCC miRNA-Seq tumor CPT0245180006 a5dd1237-287a-4d2d-9f90-cc5905e0d35e_mirnaseq_gdc_realn.bam 196721385 BAM harmonized CPTAC3 2dabc817-54f9-4199-87ce-9812b0a202a3 4e70adcd30e032b57e4d012a0371c1e5 {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor"} -C3N-03015.RNA-Seq.chimeric.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.chimeric.gdc_realn.bam 24891000 BAM chimeric harmonized CPTAC3 2661ec62-6626-4040-aa45-8b4df93759a9 6ad57f29eeeece46ac7cb284fb68391f {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.RNA-Seq.chimeric.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.chimeric.gdc_realn.bam 40724757 BAM chimeric harmonized CPTAC3 74cb3e2b-5e8d-4c94-897d-3047df22f857 1da318d800f830cea2d5c464f4a8fe51 {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor"} -C3N-03015.RNA-Seq.genomic.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.genomic.gdc_realn.bam 6978620064 BAM genomic harmonized CPTAC3 13cee554-168a-45eb-bcb2-8a8085c36ac8 ba406e3cb2e9b3d8137c30f47b893a3f {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.RNA-Seq.genomic.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.genomic.gdc_realn.bam 10934380046 BAM genomic harmonized CPTAC3 1183d130-2edd-4eb8-86ee-0dd9315238a4 8c8ddd01f5a6cb6db6c4aab2f488f26e {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor"} -C3N-03015.RNA-Seq.S12_L003_R1.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R1_001.fastq.gz 3338583559 FASTQ S12_L003_R1 unaligned CPTAC3 d0aa4bbe-4978-447b-83de-7c30fead2c41 1d98e79d74cdaec6d7cee4db53267715 {"aliquot_tag": "ALQ_cf6c42f7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.RNA-Seq.S12_L003_R2.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R2_001.fastq.gz 3728990244 FASTQ S12_L003_R2 unaligned CPTAC3 eab348fb-e04f-4246-94de-a6094d0dc484 e910ef3c0246c3d9e790cd3d8de43197 {"aliquot_tag": "ALQ_cf6c42f7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.RNA-Seq.S33_L008_R1.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R1_001.fastq.gz 4849498926 FASTQ S33_L008_R1 unaligned CPTAC3 96d2dcaf-0369-42ab-8fad-ea6453fbdbc8 78e586dd958d6cd767adfc4d1aa0323d {"aliquot_tag": "ALQ_f20c6b47", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03015.RNA-Seq.S33_L008_R2.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R2_001.fastq.gz 5610026313 FASTQ S33_L008_R2 unaligned CPTAC3 3e139705-ff7a-4715-8a37-f409a23606b4 a77d1adb7f682815dbf0a0eceb930715 {"aliquot_tag": "ALQ_f20c6b47", "sample": "S33", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03015.RNA-Seq.transcriptome.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.transcriptome.gdc_realn.bam 10851561246 BAM transcriptome harmonized CPTAC3 311ae124-d599-4327-a618-5166d64396b4 ff34e6d2bfe0156ae58ca9a7fa0d76f6 {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.RNA-Seq.transcriptome.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.transcriptome.gdc_realn.bam 15573666604 BAM transcriptome harmonized CPTAC3 69408743-ecc2-4ac8-8a7c-208996db20fb cf55d5aaa3e1bddc669d09ef2308d9a8 {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor"} -C3N-03015.WGS.N C3N-03015 HNSCC WGS blood_normal CPT0245220002 CPT0245220002.WholeGenome.RP-1303.bam 71135987800 BAM aligned CPTAC3 efa03691-abe1-4a04-9482-f3a4c6c091e0 ab994bb6ff0e86967d424a573e96d889 {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal"} -C3N-03015.WGS.N.hg38 C3N-03015 HNSCC WGS blood_normal CPT0245220002 b6f96b8b-abfc-4abc-8495-ed638b7f3e1e_wgs_gdc_realn.bam 105411263940 BAM harmonized CPTAC3 0fa22853-6f42-4c51-b497-7d6e99de1338 f4230575d5a9d4461376437c76187c12 {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal"} -C3N-03015.WGS.T C3N-03015 HNSCC WGS tumor CPT0245180009 CPT0245180009.WholeGenome.RP-1303.bam 68215797925 BAM aligned CPTAC3 6e1def99-e64f-42e6-8b36-03d39cd39d1f f0cc0fbf1386837e812585bc0f65af43 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor"} -C3N-03015.WGS.T.hg38 C3N-03015 HNSCC WGS tumor CPT0245180009 57381eac-4fd0-41d7-a67a-4396584c0dce_wgs_gdc_realn.bam 100678083227 BAM harmonized CPTAC3 40055c9f-993d-45f1-98a5-b3f0bc0a4b4f bf159f184a3c17a798b0717d5b01976c {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor"} -C3N-03015.WXS.A C3N-03015 HNSCC WXS tissue_normal CPT0245190009 CPT0245190009.WholeExome.RP-1303.bam 29082043390 BAM aligned CPTAC3 1b62f5da-4e54-464a-8864-ee829f61ea41 c089609f4458dc080be1e315d2ba377e {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.WXS.A.hg38 C3N-03015 HNSCC WXS tissue_normal CPT0245190009 3ed5a1e5-6093-455b-9d3c-04ea6c53755f_wxs_gdc_realn.bam 39976265546 BAM harmonized CPTAC3 9f84fc76-9584-4025-923f-f20f5dd30f89 23045539dd34daa74b16aa3fd2878d7f {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03015.WXS.N C3N-03015 HNSCC WXS blood_normal CPT0245220002 CPT0245220002.WholeExome.RP-1303.bam 30553379195 BAM aligned CPTAC3 d061e833-2870-4ebf-a24d-981ae55878a7 1d15d14bd5167e459ec719f85e74451e {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal"} -C3N-03015.WXS.N.hg38 C3N-03015 HNSCC WXS blood_normal CPT0245220002 b6f96b8b-abfc-4abc-8495-ed638b7f3e1e_wxs_gdc_realn.bam 41262511455 BAM harmonized CPTAC3 f28be4c8-230c-4769-9a1d-f5e4cf9d1f98 2714bcae3e2e98a89a0d7599e70d4286 {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal"} -C3N-03015.WXS.T C3N-03015 HNSCC WXS tumor CPT0245180009 CPT0245180009.WholeExome.RP-1303.bam 22638757792 BAM aligned CPTAC3 677d2728-f51d-411f-b9e3-ad6afdc0bebc a8f6614a1fac80105c396a863d3e52c8 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor"} -C3N-03015.WXS.T.hg38 C3N-03015 HNSCC WXS tumor CPT0245180009 57381eac-4fd0-41d7-a67a-4396584c0dce_wxs_gdc_realn.bam 31076543016 BAM harmonized CPTAC3 c1a5e290-a06e-4df4-b5d6-93326f8b76a3 5a47b3eed8b1c77d7d9ed2e7c7adc579 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor"} -C3N-03018.MethArray.Green.A C3N-03018 CCRCC Methylation_Array tissue_normal CPT0188990009 204930640120_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2c2ce89b-be54-4702-a376-47d5fdb9f6c2 0c6b8621f07d47267f3f092a5be96ebb {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.MethArray.Green.T C3N-03018 CCRCC Methylation_Array tumor CPT0188980011 203220070171_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8f0d2fe0-561a-437b-955e-0992f3a02239 e1e01f907e159c383c1817bde99c5c85 {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor"} -C3N-03018.MethArray.Red.A C3N-03018 CCRCC Methylation_Array tissue_normal CPT0188990009 204930640120_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 5dc1231a-f9c3-46c6-bb26-175f2946db85 659804ebfed269670fbf04996e846e39 {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.MethArray.Red.T C3N-03018 CCRCC Methylation_Array tumor CPT0188980011 203220070171_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 cb8695ec-5db0-4095-a8ca-2a572710eb0b 853f6be643c240544a5f29b16bf37a0b {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor"} -C3N-03018.miRNA-Seq.A.hg38 C3N-03018 CCRCC miRNA-Seq tissue_normal CPT0188990006 b547a548-1875-4247-b617-921844ff1628_mirnaseq_gdc_realn.bam 270737142 BAM harmonized CPTAC3 121f7f9d-02f9-4eef-835b-2d762c186698 219cb99b0357910482221b394a3be6b2 {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.miRNA-Seq.S36_L005_R1.T C3N-03018 CCRCC miRNA-Seq tumor CPT0188980009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCAACA_S36_L005_R1_001.unaln.bam 164701257 BAM S36_L005_R1 unaligned CPTAC3 6fd230c8-5813-40ba-8ad4-5d377c8d2f8d 6810b56821d9ec2e4f1aa3b7c4ef520f {"aliquot_tag": "ALQ_8115bcf1", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03018.miRNA-Seq.S43_L002_R1.A C3N-03018 CCRCC miRNA-Seq tissue_normal CPT0188990006 190206_UNC31-K00269_0191_AH2WY5BBXY_GCCAAT_S43_L002_R1_001.unaln.bam 244060307 BAM S43_L002_R1 unaligned CPTAC3 068b2511-f8e8-4ad7-875a-50baeae172fa 5458bf29e737946f19770aa1b04da352 {"aliquot_tag": "ALQ_2cca88d0", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.miRNA-Seq.T.hg38 C3N-03018 CCRCC miRNA-Seq tumor CPT0188980009 eb92ef42-c4c9-4c6e-ad49-728bad7e52de_mirnaseq_gdc_realn.bam 182223645 BAM harmonized CPTAC3 0ce2451b-6ff8-4ca9-8350-c003620cf9dd 83dd6e07a703d70095ebffe7a8ed71cc {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor"} -C3N-03018.RNA-Seq.chimeric.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.chimeric.gdc_realn.bam 70255850 BAM chimeric harmonized CPTAC3 2c897022-33fb-489c-9d6d-57d4fd309357 0117e293dff2dfe318c53540f3b5598d {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.RNA-Seq.chimeric.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.chimeric.gdc_realn.bam 29787632 BAM chimeric harmonized CPTAC3 52f89368-3954-44b1-bff2-f17f316bcae9 5dd715ed624222167aee7d6598303025 {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor"} -C3N-03018.RNA-Seq.genomic.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.genomic.gdc_realn.bam 9180576302 BAM genomic harmonized CPTAC3 6e9eb4aa-9ef9-42c6-a9c7-8839174b1360 9e6370cbd0dbad844b41e8cf97337668 {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.RNA-Seq.genomic.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.genomic.gdc_realn.bam 8106249496 BAM genomic harmonized CPTAC3 0f3838ed-c43d-4043-810c-e759e3fb543c 60f4def6eeed0fb16dc82d36c30a9be9 {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor"} -C3N-03018.RNA-Seq.S14_L004_R1.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R1_001.fastq.gz 4236132263 FASTQ S14_L004_R1 unaligned CPTAC3 1613a36c-b449-4dfc-84c0-78232ff07762 3b6b34f2fc83f96bb665e3abc927feb7 {"aliquot_tag": "ALQ_2cca88d0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.RNA-Seq.S14_L004_R2.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R2_001.fastq.gz 4713458088 FASTQ S14_L004_R2 unaligned CPTAC3 398979c4-d7d7-47a5-a93d-2fb96fc1ad24 6ba05ed49bd76cb060db74762a2f8da7 {"aliquot_tag": "ALQ_2cca88d0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.RNA-Seq.S4_L007_R1.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R1_001.fastq.gz 3885272639 FASTQ S4_L007_R1 unaligned CPTAC3 85813afd-2a5f-446f-a6c8-1b8437cae107 0267eb8ddd25e08d2abb69f2e67c1ff4 {"aliquot_tag": "ALQ_8115bcf1", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03018.RNA-Seq.S4_L007_R2.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R2_001.fastq.gz 4151472889 FASTQ S4_L007_R2 unaligned CPTAC3 2f149e6d-2235-4629-b132-035a60c2a478 08dc41e8f88a641ea6e7f8e1a0940b61 {"aliquot_tag": "ALQ_8115bcf1", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03018.RNA-Seq.transcriptome.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.transcriptome.gdc_realn.bam 10193831790 BAM transcriptome harmonized CPTAC3 56f4cbe4-9bf7-4882-933b-9e3b77cccf1e f423615adc00b60e861a08920b62d28c {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.RNA-Seq.transcriptome.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.transcriptome.gdc_realn.bam 11698328411 BAM transcriptome harmonized CPTAC3 8440aa70-19b4-4183-bf11-2639a99623bc 78042007da4f5165dc305729376b5d64 {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor"} -C3N-03018.WGS.N C3N-03018 CCRCC WGS blood_normal CPT0189020002 CPT0189020002.WholeGenome.RP-1303.bam 144361089803 BAM aligned CPTAC3 daff28dd-a0ba-4a6d-a590-58c68194e5bc cfb593376eaa21bccd35328e5982dc6c {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03018.WGS.N.hg38 C3N-03018 CCRCC WGS blood_normal CPT0189020002 8dea3282-81d6-4bd3-8b68-526f8b69f009_wgs_gdc_realn.bam 206770270686 BAM harmonized CPTAC3 fde130bd-1cda-4ed3-9193-0e580161d7ee f3305e9bcd723399fbaa885661c3ddb9 {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03018.WGS.T C3N-03018 CCRCC WGS tumor CPT0188980011 CPT0188980011.WholeGenome.RP-1303.bam 136196967978 BAM aligned CPTAC3 27535746-028f-434d-9180-94463a74672c 888f697217e9733a805f2abcb8f6ef03 {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor"} -C3N-03018.WGS.T.hg38 C3N-03018 CCRCC WGS tumor CPT0188980011 37f0be2f-5a23-4ecb-979f-940b7671d4d9_wgs_gdc_realn.bam 193723618248 BAM harmonized CPTAC3 39ef05a3-075e-4c24-8c15-a860dd878e69 d8c63cf57f7f61dcb2373976022c0b5a {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor"} -C3N-03018.WXS.A C3N-03018 CCRCC WXS tissue_normal CPT0188990009 CPT0188990009.WholeExome.RP-1303.bam 32166511040 BAM aligned CPTAC3 3646c65b-6b01-42f3-bf29-15518d595a91 aa5670555a49d55f7400f69a7f28e122 {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.WXS.A.hg38 C3N-03018 CCRCC WXS tissue_normal CPT0188990009 2fb0b68a-966c-477a-9145-90f3bd496647_wxs_gdc_realn.bam 44613758640 BAM harmonized CPTAC3 3c10613e-d1f1-427d-9f72-2fcebb42af69 74aadf9cf30de82722ebaa2122b27893 {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03018.WXS.N C3N-03018 CCRCC WXS blood_normal CPT0189020002 CPT0189020002.WholeExome.RP-1303.bam 20077608462 BAM aligned CPTAC3 e2b60b6a-878a-46af-bbc3-fb051dc1ecbb c4f775bc904e01353b263d19de757760 {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03018.WXS.N.hg38 C3N-03018 CCRCC WXS blood_normal CPT0189020002 8dea3282-81d6-4bd3-8b68-526f8b69f009_wxs_gdc_realn.bam 27253469823 BAM harmonized CPTAC3 d10a6964-3782-45a3-a36e-012d3a6da23a a0095eb91b1f5dfbbbd97b58405c13e6 {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03018.WXS.T C3N-03018 CCRCC WXS tumor CPT0188980011 CPT0188980011.WholeExome.RP-1303.bam 25149269384 BAM aligned CPTAC3 51d0490a-959f-4ff8-a222-335a1a33df62 a3ed004106d79de5cc41adb9f2cd5e3f {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor"} -C3N-03018.WXS.T.hg38 C3N-03018 CCRCC WXS tumor CPT0188980011 37f0be2f-5a23-4ecb-979f-940b7671d4d9_wxs_gdc_realn.bam 34576572531 BAM harmonized CPTAC3 9e37deb7-611f-434a-920d-765422d1077d a5e449603f2668239438ca665b17420b {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor"} -C3N-03019.MethArray.Green.A C3N-03019 CCRCC Methylation_Array tissue_normal CPT0189040009 204930640108_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7b9ad1e0-0a41-42c0-9ee6-d9157a63e014 52d5f34a0a950e90d7f01edf800b6f08 {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.MethArray.Green.T C3N-03019 CCRCC Methylation_Array tumor CPT0189030006 203219650127_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ea08e712-9f01-41f6-b1d2-000dcfed697e f64d4ff61f87bf7250161fd3315b6322 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor"} -C3N-03019.MethArray.Red.A C3N-03019 CCRCC Methylation_Array tissue_normal CPT0189040009 204930640108_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 b264aa01-1ffe-4a43-8ff1-407dab45bdc2 1fea23ba43df488561dd444727039f17 {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.MethArray.Red.T C3N-03019 CCRCC Methylation_Array tumor CPT0189030006 203219650127_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 09d24bec-54b3-4eca-8634-6496fad407d3 46d5b924ebb344d9d36514a46012bd8b {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor"} -C3N-03019.miRNA-Seq.A.hg38 C3N-03019 CCRCC miRNA-Seq tissue_normal CPT0189040006 bfa1c963-a12e-412a-b243-2a856001b073_mirnaseq_gdc_realn.bam 211802550 BAM harmonized CPTAC3 6860d47c-8315-4593-afaa-e09dcfa80a2d e54b82789a6385e3e0fa3258b42894ed {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.miRNA-Seq.S37_L005_R1.T C3N-03019 CCRCC miRNA-Seq tumor CPT0189030009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L005_R1_001.unaln.bam 308961444 BAM S37_L005_R1 unaligned CPTAC3 0e1b5e1b-30e3-459f-a9d7-637845cfefc2 008d1340e275e1f8a3b350d6b4c29bf8 {"aliquot_tag": "ALQ_77bdd79c", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03019.miRNA-Seq.S42_L002_R1.A C3N-03019 CCRCC miRNA-Seq tissue_normal CPT0189040006 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGATC_S42_L002_R1_001.unaln.bam 190739181 BAM S42_L002_R1 unaligned CPTAC3 57687b93-55e5-4d4f-a840-1c3109980f6d 9b754bd41f48533fb1959ecc32b086b1 {"aliquot_tag": "ALQ_5522161d", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.miRNA-Seq.T.hg38 C3N-03019 CCRCC miRNA-Seq tumor CPT0189030009 444dc913-e776-43d0-a143-bc297a8e42f2_mirnaseq_gdc_realn.bam 343732308 BAM harmonized CPTAC3 e933fc99-16da-4453-9504-592014aef4de a5ad143515f366dfff5d1317c5a5449b {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor"} -C3N-03019.RNA-Seq.chimeric.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.chimeric.gdc_realn.bam 126639952 BAM chimeric harmonized CPTAC3 1e8e363d-0ca5-46ac-a180-4627586fcc43 fef0802587c807bfe64d32d286aae85a {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.RNA-Seq.chimeric.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.chimeric.gdc_realn.bam 32312102 BAM chimeric harmonized CPTAC3 b451d952-7f90-4845-b9c4-19856f101193 2d7a46728237a1a7954b1bc6ddefc9dc {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor"} -C3N-03019.RNA-Seq.genomic.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.genomic.gdc_realn.bam 8927009207 BAM genomic harmonized CPTAC3 bffbf5b5-c50c-4347-a249-0661043a4050 dbc8cd68786cd7e6d0c2782a7e25856c {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.RNA-Seq.genomic.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.genomic.gdc_realn.bam 7171496116 BAM genomic harmonized CPTAC3 4f7be28b-43b3-4668-8a77-a1925306a139 0bba3ea2ad050980dfd380bfb491ed4c {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor"} -C3N-03019.RNA-Seq.S13_L004_R1.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R1_001.fastq.gz 4101502023 FASTQ S13_L004_R1 unaligned CPTAC3 398467bc-30da-4d22-90f2-576c928cc6db 2be95be73a73e746cfaaa88e6cbe6b4b {"aliquot_tag": "ALQ_5522161d", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.RNA-Seq.S13_L004_R2.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R2_001.fastq.gz 4557784067 FASTQ S13_L004_R2 unaligned CPTAC3 4bdcc52d-a58e-40fe-9bfb-bf62c670e53a 97be6649e9b3772290756b1177e742aa {"aliquot_tag": "ALQ_5522161d", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.RNA-Seq.S5_L008_R1.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R1_001.fastq.gz 3570715965 FASTQ S5_L008_R1 unaligned CPTAC3 0101c8bc-d732-400b-85ae-045318f8bec7 226f74cbf04137025b3707d429d4a5e7 {"aliquot_tag": "ALQ_77bdd79c", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03019.RNA-Seq.S5_L008_R2.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R2_001.fastq.gz 3781214014 FASTQ S5_L008_R2 unaligned CPTAC3 ad158cb1-d670-4443-898b-6fba5c0c15dd 26f6fda50618646f4ea989f6a6da660f {"aliquot_tag": "ALQ_77bdd79c", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03019.RNA-Seq.transcriptome.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.transcriptome.gdc_realn.bam 9870590259 BAM transcriptome harmonized CPTAC3 4991fcdb-ddfc-41ce-b373-c77719c2f42c 97fbda3db12f3a2742f3d0855fe5764d {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.RNA-Seq.transcriptome.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.transcriptome.gdc_realn.bam 9391785021 BAM transcriptome harmonized CPTAC3 9863466f-38d6-4e07-ae87-d6c7ad198a2a 99da1c724dc61d9018803d35a4a9b38e {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor"} -C3N-03019.WGS.N C3N-03019 CCRCC WGS blood_normal CPT0189070002 CPT0189070002.WholeGenome.RP-1303.bam 88508002820 BAM aligned CPTAC3 442c40e4-bdf0-4ad0-b053-d3e6c949610e 19598dd4d475afa9e9b972f9444fcbb5 {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03019.WGS.N.hg38 C3N-03019 CCRCC WGS blood_normal CPT0189070002 6e1b1c10-87e8-47aa-b657-fbe0dc1fc448_wgs_gdc_realn.bam 127976849743 BAM harmonized CPTAC3 d09ff66c-8341-411d-9f80-1911a54424df 5efcd95ada168ae85f75a0246b102d1e {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03019.WGS.T C3N-03019 CCRCC WGS tumor CPT0189030006 CPT0189030006.WholeGenome.RP-1303.bam 95549142318 BAM aligned CPTAC3 f500bf5d-8c92-471b-9cd7-337d81433039 f619166aee212489a022741be11db173 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor"} -C3N-03019.WGS.T.hg38 C3N-03019 CCRCC WGS tumor CPT0189030006 f1f65a12-c36b-4484-b54f-97bb2abd5bc6_wgs_gdc_realn.bam 140502985611 BAM harmonized CPTAC3 9c02c21b-64a2-4254-bc90-a70b28524126 e817230e20cdb55335de09437e54aa10 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor"} -C3N-03019.WXS.A C3N-03019 CCRCC WXS tissue_normal CPT0189040009 CPT0189040009.WholeExome.RP-1303.bam 33863889223 BAM aligned CPTAC3 a950439f-00e8-41cb-b90d-e3fc47ff1f2a 105251e1fafced918f9ce2c62ee10447 {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.WXS.A.hg38 C3N-03019 CCRCC WXS tissue_normal CPT0189040009 27b72e6c-e5df-4eb4-9342-040c199ded13_wxs_gdc_realn.bam 47622975997 BAM harmonized CPTAC3 90080a89-96b0-4427-b89f-43b83caaacc4 22907fc76cc5793622287132006bb45c {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03019.WXS.N C3N-03019 CCRCC WXS blood_normal CPT0189070002 CPT0189070002.WholeExome.RP-1303.bam 25546971489 BAM aligned CPTAC3 2aa91659-7885-42e8-8097-9e6818402d61 7ba597e8493dc90e4ea108863182222d {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03019.WXS.N.hg38 C3N-03019 CCRCC WXS blood_normal CPT0189070002 6e1b1c10-87e8-47aa-b657-fbe0dc1fc448_wxs_gdc_realn.bam 34860217744 BAM harmonized CPTAC3 9a821f9e-e230-491b-a21d-f60c665392d0 13edddb5e090d9bd0dae6ccc23f3662a {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03019.WXS.T C3N-03019 CCRCC WXS tumor CPT0189030006 CPT0189030006.WholeExome.RP-1303.bam 26348815519 BAM aligned CPTAC3 f8282b62-0b48-4c8c-9200-0260a72c360f e15cd4bccbbe7f2fc043ebccbed8cb01 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor"} -C3N-03019.WXS.T.hg38 C3N-03019 CCRCC WXS tumor CPT0189030006 f1f65a12-c36b-4484-b54f-97bb2abd5bc6_wxs_gdc_realn.bam 36734687198 BAM harmonized CPTAC3 8083d1cb-0ee9-453a-a4a2-77354a28f686 d2321f266672e41e2e157ec5f7b2a2ff {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor"} -C3N-03020.MethArray.Green.T C3N-03020 CCRCC Methylation_Array tumor CPT0189080011 203220070151_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 755f52bc-2281-4829-b99a-e8cf13abfcc7 92e9c2a4f8aab5456b1eeba8cce02e7b {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor"} -C3N-03020.MethArray.Red.T C3N-03020 CCRCC Methylation_Array tumor CPT0189080011 203220070151_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 6fa21eb2-57b4-40cb-91ac-67528b54cffe c99af308908491d35aefc2b743d1a603 {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor"} -C3N-03020.miRNA-Seq.S42_L005_R1.T C3N-03020 CCRCC miRNA-Seq tumor CPT0189080009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAATCG_S42_L005_R1_001.unaln.bam 170871592 BAM S42_L005_R1 unaligned CPTAC3 e99dc000-8fd4-434a-a4db-f1542912374f 2766dd79d16ca85c6fb060ea455e95bb {"aliquot_tag": "ALQ_6de68d", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03020.miRNA-Seq.T.hg38 C3N-03020 CCRCC miRNA-Seq tumor CPT0189080009 e8acf01d-03f5-48c7-8745-7956334c5b8f_mirnaseq_gdc_realn.bam 190636064 BAM harmonized CPTAC3 123a1c23-3a00-445f-b956-b44ba9e8d5b3 d26d5ae91102251bed133f37e156b3bd {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor"} -C3N-03020.RNA-Seq.chimeric.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.chimeric.gdc_realn.bam 37197408 BAM chimeric harmonized CPTAC3 7c576f96-092c-4e8f-b1ba-29f8c1b6403e cc26fcd997756220388773083a41b675 {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor"} -C3N-03020.RNA-Seq.genomic.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.genomic.gdc_realn.bam 7678429446 BAM genomic harmonized CPTAC3 61d80ab5-1f61-497f-88ac-41e08a5eb91f 65faaa94cd206733b43cdf811af9b626 {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor"} -C3N-03020.RNA-Seq.S2_L001_R1.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3608929328 FASTQ S2_L001_R1 unaligned CPTAC3 850eedab-8759-45ec-9839-185f0ccd0f4d 7ea4a9c7949dd9f0c7df5c592aac0dc2 {"aliquot_tag": "ALQ_6de68d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03020.RNA-Seq.S2_L001_R2.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3686692454 FASTQ S2_L001_R2 unaligned CPTAC3 ed56c706-12d3-4109-8738-fe891ed8e99f 5a08a0ab735b4646ca1e68e4af2f98fe {"aliquot_tag": "ALQ_6de68d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03020.RNA-Seq.transcriptome.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.transcriptome.gdc_realn.bam 9489851615 BAM transcriptome harmonized CPTAC3 e7192cb7-4266-42e2-bec5-50186ab65f00 0f44576fc7fff9a313c8e9a8e01536ab {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor"} -C3N-03020.WGS.N C3N-03020 CCRCC WGS blood_normal CPT0189100002 CPT0189100002.WholeGenome.RP-1303.bam 76296759120 BAM aligned CPTAC3 308c6796-4678-4518-b6d8-fa41ef257c7e ae02bca4dd163decc22933d5bbcd071f {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal"} -C3N-03020.WGS.N.hg38 C3N-03020 CCRCC WGS blood_normal CPT0189100002 bf26c019-5a7f-4c24-a45c-593978962201_wgs_gdc_realn.bam 111352753437 BAM harmonized CPTAC3 45243d21-3eea-4d0b-b64a-740753ea401e 76cc19ae594dc2bed320b68e0966183e {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal"} -C3N-03020.WGS.T C3N-03020 CCRCC WGS tumor CPT0189080011 CPT0189080011.WholeGenome.RP-1303.bam 55359168645 BAM aligned CPTAC3 cd661a21-071f-475b-bb7e-29744e80ce61 a40b49a7a5bf787e52af06cb6d5678df {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor"} -C3N-03020.WGS.T.hg38 C3N-03020 CCRCC WGS tumor CPT0189080011 4e8d8f7b-c47f-4a48-8752-154599c839dc_wgs_gdc_realn.bam 81042190771 BAM harmonized CPTAC3 c921fef0-0951-431c-aad2-9ba2531bd543 22f572de983dedb651832d411b7cbfdc {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor"} -C3N-03020.WXS.N C3N-03020 CCRCC WXS blood_normal CPT0189100002 CPT0189100002.WholeExome.RP-1303.bam 20890593864 BAM aligned CPTAC3 74c1cd43-5777-41ca-95a8-4b236d25adc6 7efe1b1ae91860efcfd2a36eeec27295 {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal"} -C3N-03020.WXS.N.hg38 C3N-03020 CCRCC WXS blood_normal CPT0189100002 bf26c019-5a7f-4c24-a45c-593978962201_wxs_gdc_realn.bam 29116026429 BAM harmonized CPTAC3 70297bb3-bb0c-4b9a-96f5-31806b7a1b58 9e9c69f809e630c8117f0a8252260fdb {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal"} -C3N-03020.WXS.T C3N-03020 CCRCC WXS tumor CPT0189080011 CPT0189080011.WholeExome.RP-1303.bam 25045763865 BAM aligned CPTAC3 2016195e-ca1f-411b-a789-c5a2cf0eb151 00d8bdd824a2030eb505856966df1413 {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor"} -C3N-03020.WXS.T.hg38 C3N-03020 CCRCC WXS tumor CPT0189080011 4e8d8f7b-c47f-4a48-8752-154599c839dc_wxs_gdc_realn.bam 34581282758 BAM harmonized CPTAC3 7cc1df79-0914-4a83-9c07-58ba57415ae1 13f1c5ab4d46ac2c6f2fc3d7bc3c71b5 {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor"} -C3N-03021.MethArray.Green.A C3N-03021 CCRCC Methylation_Array tissue_normal CPT0189120009 204930630084_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dd94e318-9a04-46b6-9e7f-c045d633597b 48f9087326a830b8c3ac3304e04d49ba {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.MethArray.Green.T C3N-03021 CCRCC Methylation_Array tumor CPT0189110006 203219650098_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9af6f753-2c50-4015-b88b-e61ee939f41e e84e87c89f8df29a8e04befd5d6b77e3 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor"} -C3N-03021.MethArray.Red.A C3N-03021 CCRCC Methylation_Array tissue_normal CPT0189120009 204930630084_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 4669603b-dae2-407d-bb9e-06fefc8cbd0f 4bad5408fd03d1bb8f7d9d31b512814e {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.MethArray.Red.T C3N-03021 CCRCC Methylation_Array tumor CPT0189110006 203219650098_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 65206781-9cd3-494a-b18c-1abd0041f196 6061204c55df2f09def6ad83ea293da1 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor"} -C3N-03021.miRNA-Seq.A.hg38 C3N-03021 CCRCC miRNA-Seq tissue_normal CPT0189120006 ce634d6c-fbec-4a3d-a96b-034b8fd3fc17_mirnaseq_gdc_realn.bam 260719789 BAM harmonized CPTAC3 fd82f28a-14b8-4aec-a0cc-7e2c5104bbec 8e0e56b09d44ad035ec80b2d3a1f3445 {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.miRNA-Seq.S41_L002_R1.A C3N-03021 CCRCC miRNA-Seq tissue_normal CPT0189120006 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTTGA_S41_L002_R1_001.unaln.bam 234033103 BAM S41_L002_R1 unaligned CPTAC3 c3484f89-6c50-49c0-9756-edb1786b214b e30e6958bd661ece35ced6534a137908 {"aliquot_tag": "ALQ_113e3018", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.miRNA-Seq.S43_L005_R1.T C3N-03021 CCRCC miRNA-Seq tumor CPT0189110009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L005_R1_001.unaln.bam 163276088 BAM S43_L005_R1 unaligned CPTAC3 f008427e-3472-4dc5-8cb3-7b42cbe5c624 f01575e490725cc3a050638f42dda88c {"aliquot_tag": "ALQ_c6215759", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03021.miRNA-Seq.T.hg38 C3N-03021 CCRCC miRNA-Seq tumor CPT0189110009 a6f1e532-baae-42d5-8e2d-19c2db219a73_mirnaseq_gdc_realn.bam 179401149 BAM harmonized CPTAC3 9cd0f0d6-4755-4388-94c4-3447a81a009e b45b4e908b5814e51e41fe1214d95e9c {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor"} -C3N-03021.RNA-Seq.chimeric.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.chimeric.gdc_realn.bam 107375767 BAM chimeric harmonized CPTAC3 aecd657d-89a3-4689-a668-879305658b25 ee128e65695149984e0a0b707d2c9eaf {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.RNA-Seq.chimeric.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.chimeric.gdc_realn.bam 40447748 BAM chimeric harmonized CPTAC3 2ff06647-dc27-4a28-8dab-56aa5f77ca0b de20ab49c982a0f80162b36eee1b52b8 {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor"} -C3N-03021.RNA-Seq.genomic.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.genomic.gdc_realn.bam 9732399630 BAM genomic harmonized CPTAC3 1c09849d-ac18-4082-8d27-cf92e2d3df86 37ad5bdaa655c9c67ff6f9d4f55ffdf4 {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.RNA-Seq.genomic.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.genomic.gdc_realn.bam 8771857657 BAM genomic harmonized CPTAC3 d567af39-3ecb-485d-9f22-9677bfe617f5 dbb923b64479f0959a0cdb82b1fa5b24 {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor"} -C3N-03021.RNA-Seq.S16_L004_R1.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R1_001.fastq.gz 4544145184 FASTQ S16_L004_R1 unaligned CPTAC3 419649c5-5daf-48a5-b179-71bee81c3e37 7adcf76d629c56e41afce94a7751dc4a {"aliquot_tag": "ALQ_113e3018", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.RNA-Seq.S16_L004_R2.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R2_001.fastq.gz 4999382702 FASTQ S16_L004_R2 unaligned CPTAC3 f5f94a34-6065-4e26-b24c-4786bdabc87d 97315e9ff110b5c355280734b9f230c5 {"aliquot_tag": "ALQ_113e3018", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.RNA-Seq.S1_L001_R1.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4423006156 FASTQ S1_L001_R1 unaligned CPTAC3 8fd114d3-7cba-4e69-a64e-21f71e0e3be6 f8442af33ee1a24195147eb2f9564c9a {"aliquot_tag": "ALQ_c6215759", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03021.RNA-Seq.S1_L001_R2.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4770379674 FASTQ S1_L001_R2 unaligned CPTAC3 27aa231e-944d-41fb-9d71-18a2d029842a 2b849af786be3f8b707bbc8e2a310922 {"aliquot_tag": "ALQ_c6215759", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03021.RNA-Seq.transcriptome.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.transcriptome.gdc_realn.bam 10878897700 BAM transcriptome harmonized CPTAC3 6b964d8a-01eb-49de-aba4-1860f27c6940 c1e5bbf2de16fa6fdeaf8b28709d6a2a {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.RNA-Seq.transcriptome.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.transcriptome.gdc_realn.bam 12642806829 BAM transcriptome harmonized CPTAC3 5fee6850-8035-4a08-a1ae-b7eb85e26a4f 3d0a39cec65aacd5878bbbbbd28b1a92 {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor"} -C3N-03021.WGS.N C3N-03021 CCRCC WGS blood_normal CPT0189150002 CPT0189150002.WholeGenome.RP-1303.bam 133904478666 BAM aligned CPTAC3 1f2b920c-6f2f-4850-a039-0e044d2826a5 e5473de744eb55a1a6146d16d0d26ee6 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal"} -C3N-03021.WGS.N.hg38 C3N-03021 CCRCC WGS blood_normal CPT0189150002 3cd7cad6-a799-402a-864c-fd700781a8d4_wgs_gdc_realn.bam 194355992259 BAM harmonized CPTAC3 27a12993-a3db-4b26-b58a-fddafe23c594 94ce42db82592e21c94017a753415408 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal"} -C3N-03021.WGS.T C3N-03021 CCRCC WGS tumor CPT0189110006 CPT0189110006.WholeGenome.RP-1303.bam 68293717111 BAM aligned CPTAC3 f662d034-475b-4223-9fac-dbf2d4627514 991c91e2d5154df2d0e0589b92f7fb86 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor"} -C3N-03021.WGS.T.hg38 C3N-03021 CCRCC WGS tumor CPT0189110006 d1d0580d-8da1-47d0-9fc4-ee5ab4a79a09_wgs_gdc_realn.bam 98949335862 BAM harmonized CPTAC3 d25dbf22-373f-4166-ac02-cf62d7e9dec0 d2a451665ebec9c7db5c46822ae8792f {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor"} -C3N-03021.WXS.A C3N-03021 CCRCC WXS tissue_normal CPT0189120009 CPT0189120009.WholeExome.RP-1303.bam 22810169840 BAM aligned CPTAC3 543fd08f-8293-4a04-825b-44244b2aad6f 26ce52f86a0d081b1b470d73d1377a65 {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.WXS.A.hg38 C3N-03021 CCRCC WXS tissue_normal CPT0189120009 b82c29a7-28b3-45c5-bac9-e211d4b25886_wxs_gdc_realn.bam 31495092970 BAM harmonized CPTAC3 0b9bcff2-7075-4dc5-95dc-92adde1ee3b1 fd640dd3d3774f0af164f0571159a7aa {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03021.WXS.N C3N-03021 CCRCC WXS blood_normal CPT0189150002 CPT0189150002.WholeExome.RP-1303.bam 25017255752 BAM aligned CPTAC3 c2d70fec-41a9-4984-994f-08ed4a6f4dd9 a15a4983d3cc2fc76fd19263a1d055b7 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal"} -C3N-03021.WXS.N.hg38 C3N-03021 CCRCC WXS blood_normal CPT0189150002 3cd7cad6-a799-402a-864c-fd700781a8d4_wxs_gdc_realn.bam 34507895561 BAM harmonized CPTAC3 caa89110-0ea5-4d7e-883f-a9fdece28dbc ad45968a948ad4f282dabf323cb9d151 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal"} -C3N-03021.WXS.T C3N-03021 CCRCC WXS tumor CPT0189110006 CPT0189110006.WholeExome.RP-1303.bam 31693723676 BAM aligned CPTAC3 17569d1d-e108-41f1-9530-7dcc1b9242ae 36c10659f481e57fc7c4e414b0f11feb {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor"} -C3N-03021.WXS.T.hg38 C3N-03021 CCRCC WXS tumor CPT0189110006 d1d0580d-8da1-47d0-9fc4-ee5ab4a79a09_wxs_gdc_realn.bam 44926095416 BAM harmonized CPTAC3 32ae7a7b-7039-4a7f-ac55-80c2055fc084 ae2fe7ed8a835c376a14109ac98d1918 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor"} -C3N-03025.MethArray.Green.T C3N-03025 GBM Methylation_Array tumor CPT0225840006 204367490151_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 3ab25546-7312-4706-9a9f-b649f293dbc7 6eb0f7337b61819acca71f59b3cda064 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor"} -C3N-03025.MethArray.Red.T C3N-03025 GBM Methylation_Array tumor CPT0225840006 204367490151_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 a4753ba6-da60-4003-add0-76333a79aefd 5a56bb76142cd244c94ce69d31f579eb {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor"} -C3N-03025.miRNA-Seq.S45_L002_R1.T C3N-03025 GBM miRNA-Seq tumor CPT0225840009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 252024670 BAM S45_L002_R1 unaligned CPTAC3 6528718f-4883-44ce-9c34-afa8cd8e42fc 46e396b4211575b784e9786e78295254 {"aliquot_tag": "ALQ_4623c398", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03025.miRNA-Seq.T.hg38 C3N-03025 GBM miRNA-Seq tumor CPT0225840009 ea60a154-98b8-4db7-8be8-17e4b8be7d27_mirnaseq_gdc_realn.bam 281649400 BAM harmonized CPTAC3 8595b7ac-8a46-4859-bd04-100da74c51b1 544467b2a4a26d386e2b4159e2932505 {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor"} -C3N-03025.RNA-Seq.chimeric.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.chimeric.gdc_realn.bam 26792283 BAM chimeric harmonized CPTAC3 c618ec8f-070a-4598-8390-f8257d9cf1b4 c775162e08255582a6e9611242201b1b {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor"} -C3N-03025.RNA-Seq.genomic.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.genomic.gdc_realn.bam 7021881399 BAM genomic harmonized CPTAC3 f2ea2f6a-ecb8-4e79-94d6-ccb96ae3efdf e280962fd7b31936583fe7cbdba0fd7c {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor"} -C3N-03025.RNA-Seq.S13_L004_R1.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R1_001.fastq.gz 3206199920 FASTQ S13_L004_R1 unaligned CPTAC3 6a12152f-6b09-4e4b-87a2-deac64ea83a1 7af7d029b5f85c979d54acde55db043c {"aliquot_tag": "ALQ_4623c398", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03025.RNA-Seq.S13_L004_R2.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ S13_L004_R2 unaligned CPTAC3 7ff9e556-fa20-4d91-8dc9-b02275783e96 53f472cb8808a3126bd6f5ce40f7ce57 {"aliquot_tag": "ALQ_4623c398", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03025.RNA-Seq.transcriptome.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.transcriptome.gdc_realn.bam 7483372515 BAM transcriptome harmonized CPTAC3 f392c768-c6de-45ca-8c92-763802c4724a 1710fc539e4046c251a400f042f9fd9a {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor"} -C3N-03025.WGS.N C3N-03025 GBM WGS blood_normal CPT0225860002 CPT0225860002.WholeGenome.RP-2158.bam 25773776013 BAM aligned CPTAC3 59fa4708-fd8f-4566-9d94-f62826f236be a00f5117d3b637515b9b0aa4c2924b89 {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal"} -C3N-03025.WGS.N.hg38 C3N-03025 GBM WGS blood_normal CPT0225860002 e7c50500-cae7-47da-be3b-86c64714d880_wgs_gdc_realn.bam 76319967086 BAM harmonized CPTAC3 17dc03a1-1c8b-464e-b09e-4c6824d6ae7d d80f2fcbb813fb1394e0f80d6e7ead9a {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal"} -C3N-03025.WGS.T C3N-03025 GBM WGS tumor CPT0225840006 CPT0225840006.WholeGenome.RP-2158.bam 27751823683 BAM aligned CPTAC3 fee1ecb4-d543-4fe1-acca-0bd9270d3a36 2c64fa5e3439eee3a7342734a675b557 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor"} -C3N-03025.WGS.T.hg38 C3N-03025 GBM WGS tumor CPT0225840006 db572b5f-fd90-4c8b-8609-1e5cd0c44585_wgs_gdc_realn.bam 82837102023 BAM harmonized CPTAC3 6e5ce309-2ebb-46ee-abf4-570a730bc5b8 a7d5b83ba8442c9e923a5f852b5659c8 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor"} -C3N-03025.WXS.N C3N-03025 GBM WXS blood_normal CPT0225860002 CPT0225860002.WholeExome.RP-1303.bam 25504805473 BAM aligned CPTAC3 5dcf63ed-7c2c-4759-8060-988e9dd64f99 cb34d0ca7dc61e53a147a2f0fefe5b0a {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal"} -C3N-03025.WXS.N.hg38 C3N-03025 GBM WXS blood_normal CPT0225860002 e7c50500-cae7-47da-be3b-86c64714d880_wxs_gdc_realn.bam 35098451486 BAM harmonized CPTAC3 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 ade7fbaf753c1e8b59dd0128101f922a {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal"} -C3N-03025.WXS.T C3N-03025 GBM WXS tumor CPT0225840006 CPT0225840006.WholeExome.RP-1303.bam 18505020552 BAM aligned CPTAC3 b5e8f3a9-dad6-4e6d-ba0a-a5b93814283f e438bf5d539579033441d4d01f24168b {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor"} -C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor CPT0225840006 db572b5f-fd90-4c8b-8609-1e5cd0c44585_wxs_gdc_realn.bam 26254017188 BAM harmonized CPTAC3 325ed822-683e-457a-9687-2ade3fcd0bfe a8712edffd2b32ea7d69930f401c4093 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor"} -C3N-03026.MethArray.Green.A C3N-03026 GBM Methylation_Array tissue_normal CPT0404650013 205555390119_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4849d1ac-a065-4486-bdd3-eb2cf61006d8 10c2da8ecbf8f197328ec7aa489a5f78 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.MethArray.Red.A C3N-03026 GBM Methylation_Array tissue_normal CPT0404650013 205555390119_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 b422de53-d1ac-4a06-a500-7ba88df3e850 90b431cca9fad09ac303cc353013ac94 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.miRNA-Seq.A.hg38 C3N-03026 GBM miRNA-Seq tissue_normal CPT0404650017 7ceab83d-57f4-46d6-8116-a6c8a2933401_mirnaseq_gdc_realn.bam 239978338 BAM harmonized CPTAC3 cc6695f9-a8e0-4137-bedf-d4a544e6ed53 1e4a7be2999604683407858385017eb5 {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.miRNA-Seq.S35_L005_R1.A C3N-03026 GBM miRNA-Seq tissue_normal CPT0404650017 210702_UNC32-K00270_0289_AHKJ22BBXY_TACAGC_S35_L005_R1_001.unaln.bam 220513139 BAM S35_L005_R1 unaligned CPTAC3 0e6c36db-afd8-4696-9f50-a36274ce757b e29d3fcafa8212de093e7a2326054df8 {"aliquot_tag": "ALQ_28a2e25d", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.RNA-Seq.chimeric.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.chimeric.gdc_realn.bam 365619377 BAM chimeric harmonized CPTAC3 be858ea5-891c-420b-8390-1561f0a51953 87ec29fa0df5f3b24204a30c0eef04f3 {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.RNA-Seq.genomic.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.genomic.gdc_realn.bam 9699464204 BAM genomic harmonized CPTAC3 c6ecf701-e71d-422a-ad03-e1c1b6795206 fafc49a5dc8ee7ac80f53f599a538c8c {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.RNA-Seq.S13_L004_R1.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ S13_L004_R1 unaligned CPTAC3 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 b8a62a5dc8e5969533713554b3a0959d {"aliquot_tag": "ALQ_28a2e25d", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.RNA-Seq.S13_L004_R2.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R2_001.fastq.gz 4747391657 FASTQ S13_L004_R2 unaligned CPTAC3 f826f72f-036c-4802-869d-9f33a5289ab1 1cc240055156257381563c8f511362aa {"aliquot_tag": "ALQ_28a2e25d", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.RNA-Seq.transcriptome.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.transcriptome.gdc_realn.bam 11692960445 BAM transcriptome harmonized CPTAC3 dc1a1002-7cf7-4c09-bbc7-6ea16aa50134 7a4ae39ae9debfe289fffe940a299ea5 {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.WXS.A C3N-03026 GBM WXS tissue_normal CPT0404650013 CPT0404650013.WholeExome.RP-1303.bam 30030352752 BAM aligned CPTAC3 ce8bd00b-7413-437c-b0cc-06a5aced75dc 97bceeb9941b87bad6bd20879c12fda7 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.WXS.A.hg38 C3N-03026 GBM WXS tissue_normal CPT0404650013 af48f613-b720-40f7-b1b7-24b7b0be0a06_wxs_gdc_realn.bam 41574964277 BAM harmonized CPTAC3 7d2e1f0f-fce0-44d3-b58d-acbeeebb462a 725e43442caedd1daa3c101139cdbe91 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03026.WXS.N C3N-03026 GBM WXS blood_normal CPT0404820002 CPT0404820002.WholeExome.RP-1303.bam 28972194720 BAM aligned CPTAC3 8bbc8a8e-daa0-4414-afad-656d4b7c1b8a df90041c089251a1044abab53b85f6db {"aliquot_tag": "ALQ_c9f99af3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03026.WXS.N.hg38 C3N-03026 GBM WXS blood_normal CPT0404820002 5eb34dcc-45f8-4e79-a928-68f21c1e1da2_wxs_gdc_realn.bam 40280714342 BAM harmonized CPTAC3 21123e7d-d623-4cbe-b9dc-78011ba2735a a7ed172c69a873a050a41163b004a527 {"aliquot_tag": "ALQ_c9f99af3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03027.MethArray.Green.A C3N-03027 HNSCC Methylation_Array tissue_normal CPT0226400006 203273200073_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f565bc41-7c7f-4bd6-8fe8-a35f960803f0 4e0709ed2adc352c4d8fde4aed75ac2b {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.MethArray.Green.T C3N-03027 HNSCC Methylation_Array tumor CPT0226390006 203281980258_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 b00ab547-4b45-4d7c-8d76-07cbc0ce7153 57946de3e9b9741a641c907d27836a78 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor"} -C3N-03027.MethArray.Red.A C3N-03027 HNSCC Methylation_Array tissue_normal CPT0226400006 203273200073_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 15d1b5e2-aef4-4eef-96f5-f539ae92840a 2eecff86ecf1b02fddb881d2e485f270 {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.MethArray.Red.T C3N-03027 HNSCC Methylation_Array tumor CPT0226390006 203281980258_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 07010183-8fe0-4a6c-9e58-6175724f1515 5a460ed44929a0bce651fd5e67934e44 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor"} -C3N-03027.miRNA-Seq.A.hg38 C3N-03027 HNSCC miRNA-Seq tissue_normal CPT0226400009 17c3c6f2-def0-4baa-9647-25d19f30c7fd_mirnaseq_gdc_realn.bam 274641307 BAM harmonized CPTAC3 ed47ca1d-b848-4dd2-a176-cb5f36c8335d 95755e000c0c8fb8deae530f2e7c5012 {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.miRNA-Seq.S48_L004_R1.T C3N-03027 HNSCC miRNA-Seq tumor CPT0226390009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGGCA_S48_L004_R1_001.unaln.bam 212686696 BAM S48_L004_R1 unaligned CPTAC3 2a9fafb8-ba4c-4371-afb1-6522c5f2003e 5f50bff963767a73f9b1ec5b117284ca {"aliquot_tag": "ALQ_e59ced77", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03027.miRNA-Seq.S8_L005_R1.A C3N-03027 HNSCC miRNA-Seq tissue_normal CPT0226400009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L005_R1_001.unaln.bam 239398662 BAM S8_L005_R1 unaligned CPTAC3 af84c87c-3e92-4641-9c65-4f9b3b4fd577 fa04d21e17f3f8e49aead4a54c4de260 {"aliquot_tag": "ALQ_f589bfbe", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.miRNA-Seq.T.hg38 C3N-03027 HNSCC miRNA-Seq tumor CPT0226390009 ea14ce9d-2520-4983-bd7a-db0dad253856_mirnaseq_gdc_realn.bam 235076198 BAM harmonized CPTAC3 5b8314db-4696-4b5f-9e36-be7fcea538c6 b1cc3f92c0dc5f92ac5c9ce65168a95b {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor"} -C3N-03027.RNA-Seq.chimeric.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.chimeric.gdc_realn.bam 90096204 BAM chimeric harmonized CPTAC3 515cc5fa-82c7-40a9-8a43-585ec50df5cc 8c80150b9dd07f0be45d650cba7311fb {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.RNA-Seq.chimeric.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.chimeric.gdc_realn.bam 113942877 BAM chimeric harmonized CPTAC3 2c60ad8a-9733-42a7-aaef-d9e3e2ff7906 1cbc3e175db6e189020882dfcfc47867 {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor"} -C3N-03027.RNA-Seq.genomic.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.genomic.gdc_realn.bam 8448028061 BAM genomic harmonized CPTAC3 74e94848-3611-4bab-a962-b82926d353a0 24f944afeeba0793a064c253691739cf {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.RNA-Seq.genomic.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.genomic.gdc_realn.bam 7371910238 BAM genomic harmonized CPTAC3 0d16d629-f4da-4820-8b9d-07853a388516 3d5847bc4b25d8ae6a8e8f395d07420a {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor"} -C3N-03027.RNA-Seq.S19_L004_R1.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R1_001.fastq.gz 3993517750 FASTQ S19_L004_R1 unaligned CPTAC3 212c3ae2-25f3-42ff-9df4-567f823a9622 d89c0ac952966a02b3bec271db070193 {"aliquot_tag": "ALQ_f589bfbe", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.RNA-Seq.S19_L004_R2.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R2_001.fastq.gz 4507638946 FASTQ S19_L004_R2 unaligned CPTAC3 c5bff23b-a4d8-40b5-8db1-c15a8d8ea583 aa8d061c2033bdaf6c1dc84d356225c7 {"aliquot_tag": "ALQ_f589bfbe", "sample": "S19", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.RNA-Seq.S25_L007_R1.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R1_001.fastq.gz 3445859327 FASTQ S25_L007_R1 unaligned CPTAC3 d729d0ae-e78c-464b-956e-8447d557d8ad caa99ced6c250314034cabed25e80b9e {"aliquot_tag": "ALQ_e59ced77", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03027.RNA-Seq.S25_L007_R2.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R2_001.fastq.gz 3942588207 FASTQ S25_L007_R2 unaligned CPTAC3 a31eb8da-0b6c-4a97-872c-9ee4869bb9b0 d1df7c7bd2a911f7aa3f2cd17a12bc59 {"aliquot_tag": "ALQ_e59ced77", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03027.RNA-Seq.transcriptome.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.transcriptome.gdc_realn.bam 11859864076 BAM transcriptome harmonized CPTAC3 a9e62e01-10c6-4e4e-980f-a2c1b7d39820 297663a8574b81d119ac073312c82ad7 {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.RNA-Seq.transcriptome.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.transcriptome.gdc_realn.bam 9750475450 BAM transcriptome harmonized CPTAC3 41b8fb07-bfe5-40b4-a67e-6364f8722e92 b9629589318fee8f20a753c1e1d836af {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor"} -C3N-03027.WGS.N C3N-03027 HNSCC WGS blood_normal CPT0226430002 CPT0226430002.WholeGenome.RP-1303.bam 70198489101 BAM aligned CPTAC3 edced534-7501-4c4b-8b2b-d7f2be9930dc e5637e134c4b551eb698819d9d3fb9b1 {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03027.WGS.N.hg38 C3N-03027 HNSCC WGS blood_normal CPT0226430002 39c6f609-8cf9-41db-a099-8959f1dcd941_wgs_gdc_realn.bam 100125629101 BAM harmonized CPTAC3 61899a8a-9726-4e04-8e6b-0199df765363 c4b0a8cda3de7db9aa192d025c86fede {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03027.WGS.T C3N-03027 HNSCC WGS tumor CPT0226390006 CPT0226390006.WholeGenome.RP-1303.bam 64826852061 BAM aligned CPTAC3 beb0d683-b788-4ec1-a953-77e3cf0edcd9 c96bcf13b46299b9c4a9b549d663fb9f {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor"} -C3N-03027.WGS.T.hg38 C3N-03027 HNSCC WGS tumor CPT0226390006 ea4b6a06-e797-44d8-bc6d-51842c8a6450_wgs_gdc_realn.bam 95275924109 BAM harmonized CPTAC3 859e535e-a1c4-44db-9fc4-0917c3fe99f3 eaff4e301eb179b0d87077cd374fad97 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor"} -C3N-03027.WXS.A C3N-03027 HNSCC WXS tissue_normal CPT0226400006 CPT0226400006.WholeExome.RP-1303.bam 24217340191 BAM aligned CPTAC3 3045bdd0-0e69-4b47-86ed-d608ce654530 adc138ce1197621c873f9bcf8d9f5624 {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.WXS.A.hg38 C3N-03027 HNSCC WXS tissue_normal CPT0226400006 9b0e2afe-d4a9-430d-b1da-12ead8fca7cd_wxs_gdc_realn.bam 34031625389 BAM harmonized CPTAC3 c0a0d108-3417-46fc-b59b-c3cb31e715e0 1d9381139be92737a11bbf2856e77da9 {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03027.WXS.N C3N-03027 HNSCC WXS blood_normal CPT0226430002 CPT0226430002.WholeExome.RP-1303.bam 30239393952 BAM aligned CPTAC3 f0d2a85f-c6db-454d-be62-54e3a20dba00 622cd7089e99eeb335eb265fead695fc {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03027.WXS.N.hg38 C3N-03027 HNSCC WXS blood_normal CPT0226430002 39c6f609-8cf9-41db-a099-8959f1dcd941_wxs_gdc_realn.bam 41758740267 BAM harmonized CPTAC3 595ef8ef-53ca-42eb-9920-ffa1946341cd 80a5fb053e1126687329def105769bf7 {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03027.WXS.T C3N-03027 HNSCC WXS tumor CPT0226390006 CPT0226390006.WholeExome.RP-1303.bam 22933200179 BAM aligned CPTAC3 d774f06b-c773-44a5-9eaa-bd2d08714f2e 37cb1902ebeb9953109679fb61e500a2 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor"} -C3N-03027.WXS.T.hg38 C3N-03027 HNSCC WXS tumor CPT0226390006 ea4b6a06-e797-44d8-bc6d-51842c8a6450_wxs_gdc_realn.bam 31193978000 BAM harmonized CPTAC3 0ec542a1-2297-4c52-8d4d-3049209346c3 7486ea4817885c600f4f5566c0340b87 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor"} -C3N-03028.MethArray.Green.A C3N-03028 HNSCC Methylation_Array tissue_normal CPT0226450006 203281980258_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 5ada9f38-448c-4088-9408-4d9d8b9aad7c 5946aa0ca4bc4a86106e5fbed5983317 {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.MethArray.Green.T C3N-03028 HNSCC Methylation_Array tumor CPT0226440006 203220070165_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 77a5cf66-8317-46a1-b8dd-f0c42c826e73 77a31dbffcbba68358dbad83582752cc {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor"} -C3N-03028.MethArray.Red.A C3N-03028 HNSCC Methylation_Array tissue_normal CPT0226450006 203281980258_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 c563bd40-cd74-48e2-a147-665a7bfd12ab 5f8cd2dcfc5a6c720ac90184058c738f {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.MethArray.Red.T C3N-03028 HNSCC Methylation_Array tumor CPT0226440006 203220070165_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 f22d6480-b74a-4f82-9bdd-47a0ad8a699e abc520d798a436c2cb850776dda5f2d4 {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor"} -C3N-03028.miRNA-Seq.A.hg38 C3N-03028 HNSCC miRNA-Seq tissue_normal CPT0226450009 f9d430ec-d512-47e0-adb5-ee100a901b12_mirnaseq_gdc_realn.bam 201738769 BAM harmonized CPTAC3 1615dfff-cb17-4a76-8f30-a43a8212a82f b4596b2e9ef741da7ffa746a3837b418 {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.miRNA-Seq.S38_L004_R1.T C3N-03028 HNSCC miRNA-Seq tumor CPT0226440009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTAGCT_S38_L004_R1_001.unaln.bam 209690292 BAM S38_L004_R1 unaligned CPTAC3 0dbcf525-afa6-4506-9715-6dcb8b34d49b ff91f1c7ae8f6271d4ecce3bdcc24b26 {"aliquot_tag": "ALQ_9197e", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03028.miRNA-Seq.S9_L005_R1.A C3N-03028 HNSCC miRNA-Seq tissue_normal CPT0226450009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L005_R1_001.unaln.bam 175864758 BAM S9_L005_R1 unaligned CPTAC3 cb376ee3-8b46-4978-9000-579496cd4508 d85f03719c88916d9b7ee572828b78d0 {"aliquot_tag": "ALQ_3d6930ce", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.miRNA-Seq.T.hg38 C3N-03028 HNSCC miRNA-Seq tumor CPT0226440009 595a33f3-ab3a-417f-ae4e-ea24e760675c_mirnaseq_gdc_realn.bam 230172761 BAM harmonized CPTAC3 3cc7bc7d-eaa0-42b6-9295-9fd8d1e0726f 0c722df060650cd0b8454f57da70f990 {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.chimeric.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.chimeric.gdc_realn.bam 40894797 BAM chimeric harmonized CPTAC3 f16022d2-949c-4749-805e-bfead91a4977 00bc5575bbc53fad8ff4bf35df207425 {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.RNA-Seq.chimeric.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.chimeric.gdc_realn.bam 223304477 BAM chimeric harmonized CPTAC3 11b5cf2e-afce-41f9-bb11-38c7628ad344 5d5bae6466709ecb800ef7afa7f253fe {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.chimeric.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.chimeric.gdc_realn.bam 116452530 BAM chimeric harmonized CPTAC3 d12777f5-c478-4513-8936-5096b1b84169 493f9997d73cdce10267f57f58142ec1 {"aliquot_tag": "ALQ_57503f48", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.genomic.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.genomic.gdc_realn.bam 8875415733 BAM genomic harmonized CPTAC3 5e7be264-d857-400c-8258-90ecfc353f69 7dadada6db52dc56688f6387d23cdbaf {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.RNA-Seq.genomic.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.genomic.gdc_realn.bam 7599782885 BAM genomic harmonized CPTAC3 acf9261b-dd9c-4cf4-8e92-08776663cb6f a5bcb3b31297a9069bb79543e228164b {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.genomic.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.genomic.gdc_realn.bam 8426767444 BAM genomic harmonized CPTAC3 b2de53fc-186d-4cf3-87ab-617d9d14baaa c82da4847b5aab56019bb07f67bfe8f3 {"aliquot_tag": "ALQ_57503f48", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.S23_L005_R1.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R1_001.fastq.gz 4292062124 FASTQ S23_L005_R1 unaligned CPTAC3 e589e204-487c-4ad1-9ed0-15ad3d8f565a 00b7f1e9be12803541f136636aba7ff5 {"aliquot_tag": "ALQ_3d6930ce", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.RNA-Seq.S23_L005_R2.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R2_001.fastq.gz 4839193487 FASTQ S23_L005_R2 unaligned CPTAC3 de9b8504-9cad-405e-bffa-edf0edc2e46b fa0a217f34da6de67720920c305b36a5 {"aliquot_tag": "ALQ_3d6930ce", "sample": "S23", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.RNA-Seq.S27_R1.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R1_001.fastq.gz 5413787808 FASTQ S27_R1 unaligned CPTAC3 3a435eb7-6706-41a1-a5f2-8c6080856d46 017d0182226c6607514f23e397254b9c {"aliquot_tag": "ALQ_57503f48", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.S27_R2.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R2_001.fastq.gz 5603673239 FASTQ S27_R2 unaligned CPTAC3 5957e87c-5970-4b09-b925-00dfeee77970 0c8dd66ee046b421292756c87cf7f607 {"aliquot_tag": "ALQ_57503f48", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.S3_L001_R1.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R1_001.fastq.gz 3688150302 FASTQ S3_L001_R1 unaligned CPTAC3 c55ba245-c1c7-474d-af54-0b0f24340d69 7c0e18a568b05dce0da8bfd974dbb8aa {"aliquot_tag": "ALQ_9197e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.S3_L001_R2.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R2_001.fastq.gz 4025746235 FASTQ S3_L001_R2 unaligned CPTAC3 42c126a1-fa33-4da7-8ad0-accd65e9eb71 9c02b2d35cb6ac6564127304b9ca2892 {"aliquot_tag": "ALQ_9197e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.transcriptome.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.transcriptome.gdc_realn.bam 12544591955 BAM transcriptome harmonized CPTAC3 2e1c659e-e6d4-48ca-bdec-0376449d1831 45803ae88ea92681ebaabb49450ff6bc {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.RNA-Seq.transcriptome.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.transcriptome.gdc_realn.bam 10887984366 BAM transcriptome harmonized CPTAC3 da18e694-f46b-475d-a77f-9542d8bfe89e 8de32fdf0ccf2968e002266bd8b61129 {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor"} -C3N-03028.RNA-Seq.transcriptome.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.transcriptome.gdc_realn.bam 7560550611 BAM transcriptome harmonized CPTAC3 1ad3468b-7b10-4616-8ad2-efee47cdcebb a110b79727bd3eee44efcedbe733e272 {"aliquot_tag": "ALQ_57503f48", "gdc_sample_type": "Primary Tumor"} -C3N-03028.WGS.N C3N-03028 HNSCC WGS blood_normal CPT0226480002 CPT0226480002.WholeGenome.RP-1303.bam 64210983743 BAM aligned CPTAC3 d286d0a8-9527-4d7e-a94a-b3923251c602 64da8cd756d9cbcca9396c5f56ac69f5 {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03028.WGS.N.hg38 C3N-03028 HNSCC WGS blood_normal CPT0226480002 275fae68-cebf-4eb8-bcae-77fecf1ce314_wgs_gdc_realn.bam 94354767367 BAM harmonized CPTAC3 4343c2e2-fc91-4eb6-905c-0215cb187c78 9f57f2565d15948ec2cf90637fa483c0 {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03028.WGS.T C3N-03028 HNSCC WGS tumor CPT0226440006 CPT0226440006.WholeGenome.RP-1303.bam 79232751776 BAM aligned CPTAC3 5b9a7990-5a0d-4c7c-b419-cbafcefac28d 20fae92ffbd7dd08316bd2db4824c1e0 {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor"} -C3N-03028.WGS.T.hg38 C3N-03028 HNSCC WGS tumor CPT0226440006 f055a2f7-3889-4c7b-baf8-bada9b7989b4_wgs_gdc_realn.bam 112919181480 BAM harmonized CPTAC3 b45e6cd7-db3f-48a3-9a5e-d6ac5d4d3059 bba98d3c9fe0597551aabd0d18ce230e {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor"} -C3N-03028.WXS.A C3N-03028 HNSCC WXS tissue_normal CPT0226450006 CPT0226450006.WholeExome.RP-1303.bam 24742201631 BAM aligned CPTAC3 989c2f43-b6cc-4fa8-bb8a-35602f2c4525 d5f7a5488593e0badde59bb7cb3d7d45 {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.WXS.A.hg38 C3N-03028 HNSCC WXS tissue_normal CPT0226450006 0f6bdbc8-4d34-4af2-b4f6-b6174e3e5c7a_wxs_gdc_realn.bam 34318863093 BAM harmonized CPTAC3 ca57b686-70d5-4679-b007-615f02124b92 7092f0ff25f3da42c4a1c308ced1878f {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03028.WXS.N C3N-03028 HNSCC WXS blood_normal CPT0226480002 CPT0226480002.WholeExome.RP-1303.bam 22078458920 BAM aligned CPTAC3 a0a493ad-6f3b-4d6b-8a0d-f23f0bba8848 3d13e738845be4ffc54c0b07f079339b {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03028.WXS.N.hg38 C3N-03028 HNSCC WXS blood_normal CPT0226480002 275fae68-cebf-4eb8-bcae-77fecf1ce314_wxs_gdc_realn.bam 29858297542 BAM harmonized CPTAC3 ef7578db-c8fe-41ce-be0c-25952fecf890 017e16bcb63b67f6ef56a2b102e615fd {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03028.WXS.T C3N-03028 HNSCC WXS tumor CPT0226440006 CPT0226440006.WholeExome.RP-1303.bam 39315266074 BAM aligned CPTAC3 80210fb0-2021-4dcd-9cd3-f5d78b5952cf 4a057bdea8fae811e3ded1217c30863b {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor"} -C3N-03028.WXS.T.hg38 C3N-03028 HNSCC WXS tumor CPT0226440006 f055a2f7-3889-4c7b-baf8-bada9b7989b4_wxs_gdc_realn.bam 54333068229 BAM harmonized CPTAC3 1a5979f7-587a-4af6-b6a4-c05e13b2b793 df5a3fbfd64d47dccdea5505501fd181 {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor"} -C3N-03038.MethArray.Green.A C3N-03038 LUAD Methylation_Array tissue_normal CPT0235100006 203561620162_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9b860841-fcda-48d9-ab10-4418d5d828d0 337efaa37776721885e958e635c7cf2f {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.MethArray.Green.T C3N-03038 LUAD Methylation_Array tumor CPT0235090006 203561450048_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 be5b28a4-6810-4452-a705-2629a6501127 cfe13fa4f88ec51fa16dc1ed58a6c8d7 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor"} -C3N-03038.MethArray.Red.A C3N-03038 LUAD Methylation_Array tissue_normal CPT0235100006 203561620162_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 9207ab98-3d85-40d1-b964-f14bf3f57086 280f80d7917d317a239ee48fb09b23be {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.MethArray.Red.T C3N-03038 LUAD Methylation_Array tumor CPT0235090006 203561450048_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 121cd284-0995-4ca5-bc1c-c65c9e249b33 e24964e0f8f0231a928c48852e57470a {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor"} -C3N-03038.miRNA-Seq.A.hg38 C3N-03038 LUAD miRNA-Seq tissue_normal CPT0235100009 a8e86484-a693-42cc-a77e-5920c2aec42a_mirnaseq_gdc_realn.bam 287330560 BAM harmonized CPTAC3 1806aac2-bec7-4961-851b-0b5fc99b81f4 77a85a0247a996c348cc2c1ae5ea670e {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.miRNA-Seq.S21_L004_R1.T C3N-03038 LUAD miRNA-Seq tumor CPT0235090009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTGAT_S21_L004_R1_001.unaln.bam 250753656 BAM S21_L004_R1 unaligned CPTAC3 409d0198-a8a0-455a-a61b-888898707528 c67ff6dd23ab024e16c640734677b436 {"aliquot_tag": "ALQ_9e4a85da", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03038.miRNA-Seq.S36_L007_R1.A C3N-03038 LUAD miRNA-Seq tissue_normal CPT0235100009 190712_UNC32-K00270_0192_BH7HL3BBXY_AGTCAA_S36_L007_R1_001.unaln.bam 254596591 BAM S36_L007_R1 unaligned CPTAC3 e868ee18-1e03-4947-85dc-9f6b6eb494b5 b1f9a5cf594018d352f5921753c94500 {"aliquot_tag": "ALQ_5806340e", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.miRNA-Seq.T.hg38 C3N-03038 LUAD miRNA-Seq tumor CPT0235090009 50c58581-6e17-45ab-93bc-cf8dec072d86_mirnaseq_gdc_realn.bam 273365279 BAM harmonized CPTAC3 9ae88f9d-d5c3-4c6a-bb8f-d277a33dddf2 8e3ab14882b7d5f5000dadd0a4200eb6 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor"} -C3N-03038.RNA-Seq.chimeric.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.chimeric.gdc_realn.bam 95018494 BAM chimeric harmonized CPTAC3 bda3058e-55bb-4dfa-b329-6a3631cdf3ea b4b605dde5281d56b66930a1d2c02347 {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.RNA-Seq.chimeric.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.chimeric.gdc_realn.bam 31696409 BAM chimeric harmonized CPTAC3 9f15e072-12ce-45a8-9f56-ce4e472d085f c9c1135269a93fc64dd490ec7d3e7fd9 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor"} -C3N-03038.RNA-Seq.genomic.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.genomic.gdc_realn.bam 11576999654 BAM genomic harmonized CPTAC3 4ae731c4-807a-4be0-aa39-2b9c1bf917bd 7f59829b2810b9294f3800a28ba3d784 {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.RNA-Seq.genomic.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.genomic.gdc_realn.bam 13770169439 BAM genomic harmonized CPTAC3 412bc08d-c275-4d1b-8917-a04581775cd2 71e3faabcfa3dfce10cc5a96f2df1c81 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor"} -C3N-03038.RNA-Seq.S11_L003_R1.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R1_001.fastq.gz 4435405137 FASTQ S11_L003_R1 unaligned CPTAC3 931a6fb3-85a0-44e0-ad49-9b4d16117981 92e639577547d9ae6096cfc66803c35a {"aliquot_tag": "ALQ_5806340e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.RNA-Seq.S11_L003_R2.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R2_001.fastq.gz 5074283143 FASTQ S11_L003_R2 unaligned CPTAC3 e764d0bf-3f54-493c-b1d7-96ed53d5cf56 80c875ac3772eec6fdacd8ec12f23c5e {"aliquot_tag": "ALQ_5806340e", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.RNA-Seq.S29_L008_R1.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R1_001.fastq.gz 4244552340 FASTQ S29_L008_R1 unaligned CPTAC3 4239c264-cf13-41ea-b256-fd8c66372843 3a4f40993e6504ccad12c9e124987221 {"aliquot_tag": "ALQ_9e4a85da", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03038.RNA-Seq.S29_L008_R2.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R2_001.fastq.gz 4650188230 FASTQ S29_L008_R2 unaligned CPTAC3 59826fe8-e4f4-4f9a-9784-a5fccc914fe1 a049d7df49a16963ae6e8acdac52ec64 {"aliquot_tag": "ALQ_9e4a85da", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03038.RNA-Seq.transcriptome.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.transcriptome.gdc_realn.bam 10421659911 BAM transcriptome harmonized CPTAC3 2420294b-108e-433a-8993-668cee7e3f7b dce189b8700dda3830d36535717753a1 {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.RNA-Seq.transcriptome.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.transcriptome.gdc_realn.bam 10139894158 BAM transcriptome harmonized CPTAC3 46379df9-1adb-4486-8bd8-493572d326ba ca1b20a99e7b3964060eaa924a407317 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor"} -C3N-03038.WGS.N C3N-03038 LUAD WGS blood_normal CPT0235210002 CPT0235210002.WholeGenome.RP-1303.bam 84117595905 BAM aligned CPTAC3 b7e1a5fb-c345-477b-a17a-06da3c069be9 b7e16d796e73aa0b23d4da257ed6ff97 {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal"} -C3N-03038.WGS.N.hg38 C3N-03038 LUAD WGS blood_normal CPT0235210002 1284ed6e-8d14-4e9a-939c-a4dd56937db9_wgs_gdc_realn.bam 122664877713 BAM harmonized CPTAC3 02c9e8e7-c588-4121-8138-201353f47b76 6aa410ec74d00355a66c1a643e1dd78d {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal"} -C3N-03038.WGS.T C3N-03038 LUAD WGS tumor CPT0235090006 CPT0235090006.WholeGenome.RP-1303.bam 77300608562 BAM aligned CPTAC3 eac6fe8d-e5cf-44d9-b17d-dd5c762ae6cc b20ec1d965aa18205e994f588e8f8fe9 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor"} -C3N-03038.WGS.T.hg38 C3N-03038 LUAD WGS tumor CPT0235090006 7472c3a9-9302-434c-964f-7b663effb58a_wgs_gdc_realn.bam 112046841252 BAM harmonized CPTAC3 7fa10f83-656c-4208-a47a-db5b018a7d98 5f91c31bde1b3420af2f3eb5d8315a4a {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor"} -C3N-03038.WXS.A C3N-03038 LUAD WXS tissue_normal CPT0235100006 CPT0235100006.WholeExome.RP-1303.bam 23263901628 BAM aligned CPTAC3 3222bb54-7865-4ac0-bf8a-500a17dd5e50 569a53018f63f2e5381306f70a94d1f0 {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.WXS.A.hg38 C3N-03038 LUAD WXS tissue_normal CPT0235100006 884a1f13-beaa-4c3b-94ca-d1d3ed2eaa50_wxs_gdc_realn.bam 32608458545 BAM harmonized CPTAC3 2a17a004-3342-4458-bb5c-ad3b78f90059 e5c773c2aaea6d693b9d5d26b96e707f {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03038.WXS.N C3N-03038 LUAD WXS blood_normal CPT0235210002 CPT0235210002.WholeExome.RP-1303.bam 28489169308 BAM aligned CPTAC3 8697ab30-fad6-4516-b4e2-f9603b98f4dc 489244637726c642540c458bfbd59a17 {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal"} -C3N-03038.WXS.N.hg38 C3N-03038 LUAD WXS blood_normal CPT0235210002 1284ed6e-8d14-4e9a-939c-a4dd56937db9_wxs_gdc_realn.bam 38375688093 BAM harmonized CPTAC3 b40344b5-78c8-4723-98f8-32c37906669e 6b1cea3f03b55efc66e2d3686fbd0dfc {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal"} -C3N-03038.WXS.T C3N-03038 LUAD WXS tumor CPT0235090006 CPT0235090006.WholeExome.RP-1303.bam 24806113471 BAM aligned CPTAC3 87e93713-3ed0-429f-ade3-5e28e0635c0e 564a2cab460476d78a5598446cfc65a6 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor"} -C3N-03038.WXS.T.hg38 C3N-03038 LUAD WXS tumor CPT0235090006 7472c3a9-9302-434c-964f-7b663effb58a_wxs_gdc_realn.bam 34099803127 BAM harmonized CPTAC3 569029ec-a77e-44ce-a7fa-3c53a9dd4bf4 8cfa5073c40f7ba4d80d57e4cf4e6c15 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor"} -C3N-03039.MethArray.Green.A C3N-03039 PDA Methylation_Array tissue_normal CPT0235260007 203561620053_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 60820c5a-1fea-4a1f-880f-baf1a4c831b2 89a44a595b9bb4c595f3b568b3c8a982 {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03039.MethArray.Green.T C3N-03039 PDA Methylation_Array tumor CPT0235230007 203561620089_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0628f2d1-90e4-47da-a685-5166f384cc65 30fb5e13a8edb1d5b306a472101aa41b {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor"} -C3N-03039.MethArray.Red.A C3N-03039 PDA Methylation_Array tissue_normal CPT0235260007 203561620053_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 1f4ec07f-8589-4478-9b4d-1b21890e61c6 1fb8bf486d7c54080233dc407c10b751 {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03039.MethArray.Red.T C3N-03039 PDA Methylation_Array tumor CPT0235230007 203561620089_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 1dbd6040-6bd5-4cb1-bfce-4d1de45827d1 d8e7ef8e9c0491c5f092f6142e30769e {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor"} -C3N-03039.miRNA-Seq.S22_L006_R1.T C3N-03039 PDA miRNA-Seq tumor CPT0235230010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L006_R1_001.unaln.bam 225601190 BAM S22_L006_R1 unaligned CPTAC3 c6b4737b-c848-47cb-b910-b1076a451b02 cfaf1449a306ad165ce5aca3bc7859ab {"aliquot_tag": "ALQ_f9f5b595", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03039.miRNA-Seq.T.hg38 C3N-03039 PDA miRNA-Seq tumor CPT0235230010 37cfa510-f15c-4ca1-945c-d28a08135833_mirnaseq_gdc_realn.bam 254273453 BAM harmonized CPTAC3 64fe912c-8559-472c-9319-2a13026bb38a e2c828b4d7c4e2e18d65ba4da7fbba7e {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor"} -C3N-03039.RNA-Seq.chimeric.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.chimeric.gdc_realn.bam 59981106 BAM chimeric harmonized CPTAC3 e27946bf-dfff-48b5-ad46-166327145c5f 3be9cd531ea4d7c923c451847a9b437b {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor"} -C3N-03039.RNA-Seq.genomic.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.genomic.gdc_realn.bam 7451327900 BAM genomic harmonized CPTAC3 3dca0aef-74f0-4056-b437-27cbbaf59c79 39e8d7d605bf5bac797d229a32c531f4 {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor"} -C3N-03039.RNA-Seq.S8_L002_R1.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R1_001.fastq.gz 3034627423 FASTQ S8_L002_R1 unaligned CPTAC3 ef84b358-470b-4af0-9dce-4a1dcb142ce6 986d5cbafd5221aeee0624380005d0c0 {"aliquot_tag": "ALQ_f9f5b595", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03039.RNA-Seq.S8_L002_R2.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R2_001.fastq.gz 3375760731 FASTQ S8_L002_R2 unaligned CPTAC3 e128176e-a4ee-41f5-92a0-222c59ba9e61 ba353a95717be65a065bb69ec0091c4c {"aliquot_tag": "ALQ_f9f5b595", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03039.RNA-Seq.transcriptome.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.transcriptome.gdc_realn.bam 8211371181 BAM transcriptome harmonized CPTAC3 9b87bdce-50f1-45f9-babb-125b4218c2af c2db02fddf677f140a091cfbc9354907 {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor"} -C3N-03039.WGS.N C3N-03039 PDA WGS blood_normal CPT0235410002 CPT0235410002.WholeGenome.RP-1303.bam 74506743405 BAM aligned CPTAC3 3fd72bc6-b77a-40bb-bfb9-22c2076e9689 8bc92e3c08383a75309b0847dfb828c6 {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal"} -C3N-03039.WGS.N.hg38 C3N-03039 PDA WGS blood_normal CPT0235410002 802fa2ab-54ca-4122-b40f-095afe4067f2_wgs_gdc_realn.bam 108088838640 BAM harmonized CPTAC3 f5dceafa-1a22-4787-81f9-466f00d3065a 7972d6e8d0bc9a315f25368a8a71767b {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal"} -C3N-03039.WGS.T C3N-03039 PDA WGS tumor CPT0235230007 CPT0235230007.WholeGenome.RP-1303.bam 118414702230 BAM aligned CPTAC3 ad4dd011-0ced-480a-8b57-861192980c65 3440f27f31f3b0c63c877ca5df999d21 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor"} -C3N-03039.WGS.T.hg38 C3N-03039 PDA WGS tumor CPT0235230007 6ad76d8b-98cb-4bdb-90d4-590e53505e20_wgs_gdc_realn.bam 170906564742 BAM harmonized CPTAC3 0ff7d20a-14f2-4543-b6ae-5ff1454f351b 49bccd118c0503077a21c113a2e53b01 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor"} -C3N-03039.WXS.A C3N-03039 PDA WXS tissue_normal CPT0235260007 CPT0235260007.WholeExome.RP-1303.bam 22292497475 BAM aligned CPTAC3 09109fa4-b066-4faf-93b4-1eaa9f7b291b 89b174a2220ed35c34e40dfe4739fabe {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03039.WXS.A.hg38 C3N-03039 PDA WXS tissue_normal CPT0235260007 212f0663-fc17-42f2-84c3-d566daeb2ca0_wxs_gdc_realn.bam 30058514302 BAM harmonized CPTAC3 148ac633-2db0-4d9f-a366-a2683850020c 5bcc96cdd442a80ffd1056db31361968 {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03039.WXS.N C3N-03039 PDA WXS blood_normal CPT0235410002 CPT0235410002.WholeExome.RP-1303.bam 22651766245 BAM aligned CPTAC3 d9275a14-c71f-425f-9b15-63858c102653 2e008be1821d4e2e7161f3730c412b0b {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal"} -C3N-03039.WXS.N.hg38 C3N-03039 PDA WXS blood_normal CPT0235410002 802fa2ab-54ca-4122-b40f-095afe4067f2_wxs_gdc_realn.bam 31410207874 BAM harmonized CPTAC3 b7c1b971-dfaa-4bd5-860c-590190910e48 648469eeb9cd83d4670ab02efde55748 {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal"} -C3N-03039.WXS.T C3N-03039 PDA WXS tumor CPT0235230007 CPT0235230007.WholeExome.RP-1303.bam 51692201427 BAM aligned CPTAC3 6a0f3106-32b5-4f6a-9720-7dce47820908 ed5f5e9646f0c8942228259429dfb265 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor"} -C3N-03039.WXS.T.hg38 C3N-03039 PDA WXS tumor CPT0235230007 6ad76d8b-98cb-4bdb-90d4-590e53505e20_wxs_gdc_realn.bam 71395114763 BAM harmonized CPTAC3 a494f53b-3928-4589-82c2-2124ae78f311 8800c407847ce8c5fe416b715e78ba60 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor"} -C3N-03042.MethArray.Green.T C3N-03042 HNSCC Methylation_Array tumor CPT0235460006 203281980233_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 ae42d9c0-82d1-4eac-bf02-ce869fb0aeaf 229e1092ff1e8b06f7180719e725f981 {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03042.MethArray.Red.T C3N-03042 HNSCC Methylation_Array tumor CPT0235460006 203281980233_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 4d70e3b4-182e-460c-ab2f-703a73a6c0f6 386fec097344f40a6c795e05cf1c4ddb {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03042.miRNA-Seq.S36_L004_R1.T C3N-03042 HNSCC miRNA-Seq tumor CPT0235460009 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L004_R1_001.unaln.bam 198811768 BAM S36_L004_R1 unaligned CPTAC3 84ee3fac-ff68-447c-9154-bdf1fa5925c6 c887cbeb071c8038706bfb2f7b71fa5c {"aliquot_tag": "ALQ_878b501d", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03042.miRNA-Seq.T.hg38 C3N-03042 HNSCC miRNA-Seq tumor CPT0235460009 02fc3cc1-ca99-4ce9-b646-c6231ad87abe_mirnaseq_gdc_realn.bam 217547855 BAM harmonized CPTAC3 3a636f09-04b2-4181-b587-b729697be674 9592f9375857b3f985f5bec97bcbcf55 {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.chimeric.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.chimeric.gdc_realn.bam 245100968 BAM chimeric harmonized CPTAC3 720cf1e1-621b-4d79-97e9-c8f477f61690 239eda37d2409f8f62b77a393ed609a5 {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.chimeric.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.chimeric.gdc_realn.bam 177966654 BAM chimeric harmonized CPTAC3 95cec6c5-7204-4136-9655-a46ce40bf83f cfa2cf450c7045f9b8e1d6e7c7faba6a {"aliquot_tag": "ALQ_ae979c0b", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.genomic.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.genomic.gdc_realn.bam 7764578457 BAM genomic harmonized CPTAC3 074018e0-3535-430f-a10b-906e7946dc94 5f1f63bf2cbad2d1e1d08689c158c1ad {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.genomic.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.genomic.gdc_realn.bam 8468331913 BAM genomic harmonized CPTAC3 82232093-b113-4ff4-a4ec-200f0e0ea84c 18f7d2692ee01eec1300e8be26944374 {"aliquot_tag": "ALQ_ae979c0b", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.S3_L001_R1.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3714992070 FASTQ S3_L001_R1 unaligned CPTAC3 a8e7a7c4-a050-4674-a800-478d690f2a78 20df2bc080400e87dd446f0e4d7e5008 {"aliquot_tag": "ALQ_878b501d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.S3_L001_R2.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4177672596 FASTQ S3_L001_R2 unaligned CPTAC3 ada7577e-3e5c-4ab5-b817-bbdfbb5a5350 2d689efdf8895d1e2f3d5f0d9ed19e4f {"aliquot_tag": "ALQ_878b501d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.S48_R1.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R1_001.fastq.gz 5002596989 FASTQ S48_R1 unaligned CPTAC3 354207a4-a586-4047-844e-4f8e1ac91c8f 08fb862ba894bef28cf78281faf1088b {"aliquot_tag": "ALQ_ae979c0b", "sample": "S48", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.S48_R2.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R2_001.fastq.gz 5116311184 FASTQ S48_R2 unaligned CPTAC3 2e3adfb6-5e78-41c6-9d04-e433ae7a3e6d 70d465020bb43a4be8253c24584d1443 {"aliquot_tag": "ALQ_ae979c0b", "sample": "S48", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.transcriptome.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.transcriptome.gdc_realn.bam 11380213402 BAM transcriptome harmonized CPTAC3 2c041934-cee6-44d5-8c0c-fe500da61d9d 1f8f7025da7cfab29b95bb58b34f47fb {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor"} -C3N-03042.RNA-Seq.transcriptome.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.transcriptome.gdc_realn.bam 4904081610 BAM transcriptome harmonized CPTAC3 6706bede-ff89-4939-bf7a-d6e1eb277b46 318ef462dbbcd097205c49aafe5d9037 {"aliquot_tag": "ALQ_ae979c0b", "gdc_sample_type": "Primary Tumor"} -C3N-03042.WGS.N C3N-03042 HNSCC WGS blood_normal CPT0235610002 CPT0235610002.WholeGenome.RP-1303.bam 76088853823 BAM aligned CPTAC3 5d3f1a67-596a-4b52-a516-d0205f00545c 851ea8bdd348d4e23d4ef84ba873a416 {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03042.WGS.N.hg38 C3N-03042 HNSCC WGS blood_normal CPT0235610002 d48dae04-e90c-461b-a8eb-80722051857c_wgs_gdc_realn.bam 110112924403 BAM harmonized CPTAC3 134fbb2b-6a53-4e4e-ae29-760e6bd8cbf5 f4264a63268a16d33b820f2a7fd333f5 {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03042.WGS.T C3N-03042 HNSCC WGS tumor CPT0235460006 CPT0235460006.WholeGenome.RP-1303.bam 84095863726 BAM aligned CPTAC3 ad471ebf-2aac-448c-8af4-bffa7f8658ec 02207c7afb217c0c462d35da458098c6 {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03042.WGS.T.hg38 C3N-03042 HNSCC WGS tumor CPT0235460006 385ba2e4-215b-41d3-898f-70ce3b49122a_wgs_gdc_realn.bam 134499741083 BAM harmonized CPTAC3 e77e0933-93ec-4d5b-b832-3e5e92bc3308 d42faf54abd19858ef60be08618c623d {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03042.WXS.N C3N-03042 HNSCC WXS blood_normal CPT0235610002 CPT0235610002.WholeExome.RP-1303.bam 23966606123 BAM aligned CPTAC3 4d343454-9a91-43fe-a190-6c4abb2909fe 5458fc3c9e950b31a06ead30def792be {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03042.WXS.N.hg38 C3N-03042 HNSCC WXS blood_normal CPT0235610002 d48dae04-e90c-461b-a8eb-80722051857c_wxs_gdc_realn.bam 33423811815 BAM harmonized CPTAC3 f100d754-c2c6-486e-ade6-263a0ac4a415 0c2040dd268b94c15bb5b130057dda90 {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03042.WXS.T C3N-03042 HNSCC WXS tumor CPT0235460006 CPT0235460006.WholeExome.RP-1303.bam 25049510455 BAM aligned CPTAC3 e20fc429-b2a6-4f08-8aa3-460c4e83cf94 1dfeb77f7268dbb967794a658e9c4f64 {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03042.WXS.T.hg38 C3N-03042 HNSCC WXS tumor CPT0235460006 385ba2e4-215b-41d3-898f-70ce3b49122a_wxs_gdc_realn.bam 35970374203 BAM harmonized CPTAC3 78a89d30-eb59-4b4e-a7d5-50435b2c6740 61711870f441841dd49513c5785bdf5f {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_267c0fef.miRNA-Seq.S42_L002_R1.T C3N-03044 UCEC miRNA-Seq tumor CPT0235720023 190508_UNC31-K00269_0215_BH7FYKBBXY_TAATCG_S42_L002_R1_001.unaln.bam 210091631 BAM S42_L002_R1 unaligned CPTAC3 8c82c53b-a983-4195-9cd9-b238829d6631 b171fe7138b57e46389cbe36c352744f {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_267c0fef.miRNA-Seq.T.hg38 C3N-03044 UCEC miRNA-Seq tumor CPT0235720023 316f93ad-32ee-4eca-85ad-7624a099254a_mirnaseq_gdc_realn.bam 234302210 BAM harmonized CPTAC3 fee10f49-db41-4b77-bb89-2beb8381b06b 89d119f2572b7be61d26163a9f658824 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_267c0fef.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.chimeric.gdc_realn.bam 29624853 BAM chimeric harmonized CPTAC3 a9783d67-3a8f-4d77-8a43-56d01a594b8f 9ae37473d153539b869aa6edfacfb714 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_267c0fef.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.genomic.gdc_realn.bam 7211090689 BAM genomic harmonized CPTAC3 ffb60aad-8d42-4285-bdbd-ef10dfbd47b6 10b7d5e9a062d91d5a2f72a3903eb318 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_267c0fef.RNA-Seq.S28_L007_R1.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R1_001.fastq.gz 3372156198 FASTQ S28_L007_R1 unaligned CPTAC3 7b67cfae-f36c-4ca8-9b52-fd13fd009f90 e47b0feab4321b61d7d8c16cfeac2d50 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_267c0fef.RNA-Seq.S28_L007_R2.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R2_001.fastq.gz 3731757645 FASTQ S28_L007_R2 unaligned CPTAC3 ef49d83c-9edc-4fb2-a2e3-bd7193041582 0ca26d9fc23d30342a125173f7515eaf {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_267c0fef.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.transcriptome.gdc_realn.bam 9856639090 BAM transcriptome harmonized CPTAC3 668a34d9-d7d5-43e6-b901-4c1e8cbebc7d 00188dbbf64aaef3d463e12dbf44b185 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_d44fd063.miRNA-Seq.S43_L002_R1.T C3N-03044 UCEC miRNA-Seq tumor CPT0235730040 190508_UNC31-K00269_0215_BH7FYKBBXY_TACAGC_S43_L002_R1_001.unaln.bam 258538636 BAM S43_L002_R1 unaligned CPTAC3 b0ce47a0-34c1-4f25-8b3e-9e67c9e88b55 0840bfc57b224ec03bc09209398e73aa {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_d44fd063.miRNA-Seq.T.hg38 C3N-03044 UCEC miRNA-Seq tumor CPT0235730040 a6ce9d45-7de2-4b03-9e27-8cf03a3c7b19_mirnaseq_gdc_realn.bam 285787402 BAM harmonized CPTAC3 7f99812a-52d1-4cf6-964f-2722684a857d 0fc9f8353e5b91bfd86127b7fb6f0bb3 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_d44fd063.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.chimeric.gdc_realn.bam 34022394 BAM chimeric harmonized CPTAC3 6f5349a7-01ec-4716-9d66-378104707102 d7b247860bce72ebb7b5aca3d584421e {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_d44fd063.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.genomic.gdc_realn.bam 8215362411 BAM genomic harmonized CPTAC3 7bbc3259-27db-4c43-9031-c8a09c615c56 bcb70f2e22072f92b175721e081c14f5 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_d44fd063.RNA-Seq.S27_L007_R1.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R1_001.fastq.gz 4112644391 FASTQ S27_L007_R1 unaligned CPTAC3 635dfd92-32d9-4efd-b888-a90acda562f6 b23ec9e12de44f9b2e52c65e1a32d8c7 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_d44fd063.RNA-Seq.S27_L007_R2.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R2_001.fastq.gz 4608523488 FASTQ S27_L007_R2 unaligned CPTAC3 74bc5cee-2633-4d27-ab8b-1ed835be5808 5e4e15f7ec635d3064962e27340b705a {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03044.DUP_d44fd063.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.transcriptome.gdc_realn.bam 12466738562 BAM transcriptome harmonized CPTAC3 645f2765-bc00-4732-8a2c-fd3dcfb1504d 8e26d09e4afa244f4c42ccad44f033f1 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor"} -C3N-03045.MethArray.Green.T C3N-03045 HNSCC Methylation_Array tumor CPT0235910006 203219650096_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 84ea750a-d0b6-428a-9c6a-44b891c44746 a3eb270bedd6dd4c5bd7be6f15339b80 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor"} -C3N-03045.MethArray.Red.T C3N-03045 HNSCC Methylation_Array tumor CPT0235910006 203219650096_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 998daa5c-b485-461a-b7d6-7413156c0116 40948490138a05f063ad3116dfaaba87 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor"} -C3N-03045.miRNA-Seq.A.hg38 C3N-03045 HNSCC miRNA-Seq tissue_normal CPT0235920006 5230eeca-6296-48c9-a9ad-a968a819f68b_mirnaseq_gdc_realn.bam 382954467 BAM harmonized CPTAC3 3bf59241-d478-4e8e-bee0-17df9f05ac31 59ac90cfa629979a7e7f75382a8f5799 {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03045.miRNA-Seq.S138_L007_R1.A C3N-03045 HNSCC miRNA-Seq tissue_normal CPT0235920006 190828_UNC32-K00270_0200_BH7GVJBBXY_ATCACG_S138_L007_R1_001.unaln.bam 334514760 BAM S138_L007_R1 unaligned CPTAC3 e494a771-7ef6-43eb-901a-abb9aad58495 a08f6aa3fc980536c117ca9f72d7c3fe {"aliquot_tag": "ALQ_5e2af892", "sample": "S138", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03045.miRNA-Seq.S37_L004_R1.T C3N-03045 HNSCC miRNA-Seq tumor CPT0235910009 190228_UNC32-K00270_0151_AHYLY3BBXX_CGGAAT_S37_L004_R1_001.unaln.bam 187926835 BAM S37_L004_R1 unaligned CPTAC3 1077ed9b-1ade-4a32-ad88-febe07335d0d c457b0d552762ed7ee89112f61a5ba6d {"aliquot_tag": "ALQ_89359fd3", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03045.miRNA-Seq.T.hg38 C3N-03045 HNSCC miRNA-Seq tumor CPT0235910009 23232411-e126-4e4a-a591-87b97f95aabf_mirnaseq_gdc_realn.bam 213988587 BAM harmonized CPTAC3 12cc495e-5ec4-424d-9ca4-0cf8779e9273 d7d130b6e7b722f6627e692c30835f9a {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.chimeric.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.chimeric.gdc_realn.bam 39497922 BAM chimeric harmonized CPTAC3 850081a2-8ff9-4750-8166-3395671f9b69 a1e5becc3be5b610329fbae00242ef6a {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03045.RNA-Seq.chimeric.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.chimeric.gdc_realn.bam 190534477 BAM chimeric harmonized CPTAC3 ced596ab-f959-4476-aed7-ea43defb2401 d3ba14364f4647f0b8d43ca7dcfccfc0 {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.chimeric.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.chimeric.gdc_realn.bam 112401449 BAM chimeric harmonized CPTAC3 342f7790-247b-4790-a959-5310a518e6a4 b032f28da24f90b1a1bd21658a63805e {"aliquot_tag": "ALQ_e43575c0", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.genomic.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.genomic.gdc_realn.bam 8981648015 BAM genomic harmonized CPTAC3 842fb05c-af0a-4de6-98d2-92b30d830066 62ca06a452c4823ede74a63ae688f587 {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03045.RNA-Seq.genomic.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.genomic.gdc_realn.bam 7104796286 BAM genomic harmonized CPTAC3 b32d1b1b-6682-4a95-bc6a-3770daea0df0 6e742f402c6ff388273eff25adb625ad {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.genomic.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.genomic.gdc_realn.bam 10025747332 BAM genomic harmonized CPTAC3 cd414c5d-4d37-4c74-8182-1b87dda1e4a2 2a617e6d6772e70178cbbfb67e27d5f4 {"aliquot_tag": "ALQ_e43575c0", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.S14_L003_R1.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R1_001.fastq.gz 4300086770 FASTQ S14_L003_R1 unaligned CPTAC3 ad0e1d1d-2add-490c-9b4a-a42cbe1a700d 299eb0ecf37033410b66962ff2a1e644 {"aliquot_tag": "ALQ_5e2af892", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03045.RNA-Seq.S14_L003_R2.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R2_001.fastq.gz 4758883857 FASTQ S14_L003_R2 unaligned CPTAC3 528003dd-3a6c-47ba-9a80-2edc44c76635 c167ffdc7050c30c4e69c6290456cd73 {"aliquot_tag": "ALQ_5e2af892", "sample": "S14", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03045.RNA-Seq.S2_L001_R1.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3378039011 FASTQ S2_L001_R1 unaligned CPTAC3 86e2ae86-9237-4ce6-a60c-c034295c61d9 e89107dceb832300ea18ca38d088d0c0 {"aliquot_tag": "ALQ_89359fd3", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.S2_L001_R2.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3750748630 FASTQ S2_L001_R2 unaligned CPTAC3 0c8e7014-ca9c-4c89-a213-3a30d20ebbfe 5b0e4866a05c0f3624f422b6a5dd2873 {"aliquot_tag": "ALQ_89359fd3", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.S96_R1.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R1_001.fastq.gz 5494038736 FASTQ S96_R1 unaligned CPTAC3 84e55c55-19a1-40fc-aa30-6faf596b465b a3c0e5a7d385d78ef74da9a2a2724663 {"aliquot_tag": "ALQ_e43575c0", "sample": "S96", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.S96_R2.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R2_001.fastq.gz 5655919566 FASTQ S96_R2 unaligned CPTAC3 392d8056-5d1a-4fb0-9f81-5e93e32ea3f9 127cacba4c1e127e9b361f1eb2d07f8c {"aliquot_tag": "ALQ_e43575c0", "sample": "S96", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.transcriptome.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.transcriptome.gdc_realn.bam 13070985296 BAM transcriptome harmonized CPTAC3 80382b1d-7630-4f62-8f99-64fb4d2bd862 c78226e771001f5b885d5134bf6bde5a {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03045.RNA-Seq.transcriptome.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.transcriptome.gdc_realn.bam 10972706223 BAM transcriptome harmonized CPTAC3 c5392695-267c-4bf3-a229-9b863b6cc7e2 344ace913325caa82a2ea38f770533bb {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor"} -C3N-03045.RNA-Seq.transcriptome.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.transcriptome.gdc_realn.bam 9109063769 BAM transcriptome harmonized CPTAC3 796420e7-93f6-410c-9bb0-72402258edf6 f676a53f2a24ce0898b3095d47530bc3 {"aliquot_tag": "ALQ_e43575c0", "gdc_sample_type": "Primary Tumor"} -C3N-03045.WGS.N C3N-03045 HNSCC WGS blood_normal CPT0235970002 CPT0235970002.WholeGenome.RP-1303.bam 68774900112 BAM aligned CPTAC3 3c7d7521-cab0-4536-8786-b9a982a0e4d5 5644231c4693ea76cc92b19b0f2bbaaf {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03045.WGS.N.hg38 C3N-03045 HNSCC WGS blood_normal CPT0235970002 10aa4de5-0954-48a0-8eb0-79762083515d_wgs_gdc_realn.bam 100490045496 BAM harmonized CPTAC3 e8adbc66-091f-40c5-bb73-d39fa938795a 3e841536b1ccb89f12ff4a7431f85d61 {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03045.WGS.T C3N-03045 HNSCC WGS tumor CPT0235910006 CPT0235910006.WholeGenome.RP-1303.bam 70038779528 BAM aligned CPTAC3 3b8fbddc-0ad5-4214-b892-f4294562cfb8 afaeadb3c42e57562c8bdb91860324de {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor"} -C3N-03045.WGS.T.hg38 C3N-03045 HNSCC WGS tumor CPT0235910006 4cc74c91-25c6-4051-b4ba-eee19c2858f4_wgs_gdc_realn.bam 106079190636 BAM harmonized CPTAC3 840d60f6-8ccd-4f02-8f64-c782c153ea83 926210744834b11c6de6c05c131af7cc {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor"} -C3N-03045.WXS.N C3N-03045 HNSCC WXS blood_normal CPT0235970002 CPT0235970002.WholeExome.RP-1303.bam 26031062930 BAM aligned CPTAC3 8faab433-24b5-4063-b318-14b0bc61d86f 23067af2671d48555b3313591e8630ed {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03045.WXS.N.hg38 C3N-03045 HNSCC WXS blood_normal CPT0235970002 10aa4de5-0954-48a0-8eb0-79762083515d_wxs_gdc_realn.bam 36660839497 BAM harmonized CPTAC3 1efc81ad-9da6-4eff-82c8-394b036b2ac3 dce72c37b50e3203d9add67fabc3558f {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03045.WXS.T C3N-03045 HNSCC WXS tumor CPT0235910006 CPT0235910006.WholeExome.RP-1303.bam 28007759868 BAM aligned CPTAC3 e481dadc-3dd3-40de-bdad-0a6a6dddfe80 78af473269cbaa180c6a0c794670c5a0 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor"} -C3N-03045.WXS.T.hg38 C3N-03045 HNSCC WXS tumor CPT0235910006 4cc74c91-25c6-4051-b4ba-eee19c2858f4_wxs_gdc_realn.bam 38901298782 BAM harmonized CPTAC3 1360dda0-8d3c-481a-b160-2d085bc4d219 7d86d861a4c4e4d472b5cc356eed37f0 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor"} -C3N-03051.MethArray.Green.A C3N-03051 LSCC Methylation_Array tissue_normal CPT0208780006 203219670147_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 71433b74-b355-48ea-8443-a9c17b7d05e2 26efb2af5e3d6310558bdd27ed7362af {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.MethArray.Green.T C3N-03051 LSCC Methylation_Array tumor CPT0208770006 203219640068_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4a774ad1-e877-45c3-809f-f15876d31e10 8f0c18a671fca1f473d87e31cdaa9f4f {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor"} -C3N-03051.MethArray.Red.A C3N-03051 LSCC Methylation_Array tissue_normal CPT0208780006 203219670147_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 76663216-3ba4-489f-915e-861c5e654bc1 345b35318319ff58e0996c043ea97ae9 {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.MethArray.Red.T C3N-03051 LSCC Methylation_Array tumor CPT0208770006 203219640068_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1e03397d-44de-4967-89e8-35967e65e281 aeb73a31a3a9aa976a5dea5db7b1e8ae {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor"} -C3N-03051.miRNA-Seq.A.hg38 C3N-03051 LSCC miRNA-Seq tissue_normal CPT0208780009 e954edf9-525f-4d7a-9bf1-28b065f63399_mirnaseq_gdc_realn.bam 224011853 BAM harmonized CPTAC3 c47ff7ec-3d02-431b-8c12-eeb4ac764e4c 2985395fc0b63b0af3b21d49ce2b1cf6 {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.miRNA-Seq.S3_L001_R1.T C3N-03051 LSCC miRNA-Seq tumor CPT0208770009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGGCA_S3_L001_R1_001.unaln.bam 168110378 BAM S3_L001_R1 unaligned CPTAC3 5e202199-cdb9-4479-9514-2565612f7882 1195e3463d3e14535c445e17d2b31bd9 {"aliquot_tag": "ALQ_d3276d20", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03051.miRNA-Seq.S43_L004_R1.A C3N-03051 LSCC miRNA-Seq tissue_normal CPT0208780009 190206_UNC31-K00269_0191_AH2WY5BBXY_GCCAAT_S43_L004_R1_001.unaln.bam 198103722 BAM S43_L004_R1 unaligned CPTAC3 8ef14429-8291-4741-bd44-898ca9c471ab 9c0ad713f31d29394fb45b878145a69a {"aliquot_tag": "ALQ_5177faf1", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.miRNA-Seq.T.hg38 C3N-03051 LSCC miRNA-Seq tumor CPT0208770009 80fe1276-6f61-4e06-8197-e3595dfcbb44_mirnaseq_gdc_realn.bam 190249810 BAM harmonized CPTAC3 6ca5840c-f04b-4b0b-9031-4284ad47647b 9052be17e82aa45788e3e1c10288baf8 {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor"} -C3N-03051.RNA-Seq.chimeric.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.chimeric.gdc_realn.bam 172773100 BAM chimeric harmonized CPTAC3 b212c459-a154-4ada-951c-6fee34d2b11e ce9ac5e3d6180427da060c345c9eb0ad {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.RNA-Seq.chimeric.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.chimeric.gdc_realn.bam 110730853 BAM chimeric harmonized CPTAC3 f06fc7f1-cf44-4281-bed0-ab9ae4fb0f26 388e70c0daf89946090881bbab33773e {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor"} -C3N-03051.RNA-Seq.genomic.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.genomic.gdc_realn.bam 8373570435 BAM genomic harmonized CPTAC3 0cb8acde-7a63-45d5-bfad-810f8895d931 3cc995ca71aff966c0641faf06a46341 {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.RNA-Seq.genomic.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.genomic.gdc_realn.bam 8860363820 BAM genomic harmonized CPTAC3 29424dd8-53c2-4585-85af-589f43b6a665 5af8516fe57c0971dcd6470010ddc657 {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor"} -C3N-03051.RNA-Seq.S4_L001_R1.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4016798966 FASTQ S4_L001_R1 unaligned CPTAC3 20589f37-506a-444f-ae0a-75610757188c cb1071549dc0a6be7eaa5adc84bd94e5 {"aliquot_tag": "ALQ_d3276d20", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03051.RNA-Seq.S4_L001_R2.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4386670675 FASTQ S4_L001_R2 unaligned CPTAC3 f964c01f-7ed0-4593-b885-d6664e66a9d2 806db720e9207738fa3a0150170d8143 {"aliquot_tag": "ALQ_d3276d20", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03051.RNA-Seq.S6_L008_R1.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3960571449 FASTQ S6_L008_R1 unaligned CPTAC3 331e2523-a47e-42a0-8ee6-1604987c2fe5 f30b0cbba70368553c5ee9c10fa3e65e {"aliquot_tag": "ALQ_5177faf1", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.RNA-Seq.S6_L008_R2.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4489845502 FASTQ S6_L008_R2 unaligned CPTAC3 cd75c9e7-af96-432c-ac24-191a26c0c321 32fcc6241b0a3fb02796d9878825c801 {"aliquot_tag": "ALQ_5177faf1", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.RNA-Seq.transcriptome.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.transcriptome.gdc_realn.bam 10288730011 BAM transcriptome harmonized CPTAC3 abe6c5ff-36a6-4515-a7a9-462a9834c78b caa6870fdc601a2012bf80df31794ac2 {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.RNA-Seq.transcriptome.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.transcriptome.gdc_realn.bam 11424113226 BAM transcriptome harmonized CPTAC3 f65c95d3-2b30-4394-9bf2-5f21854d250e 725c1a009f25634eb967b45064cdafbb {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor"} -C3N-03051.WGS.N C3N-03051 LSCC WGS blood_normal CPT0208820002 CPT0208820002.WholeGenome.RP-1303.bam 119987787419 BAM aligned CPTAC3 207090b0-9d22-493c-87b5-7194211a6170 9436946e9445a83ac2b96eadbc5a00a2 {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03051.WGS.N.hg38 C3N-03051 LSCC WGS blood_normal CPT0208820002 82120e94-1c95-43ec-8d66-2b7e80777cfc_wgs_gdc_realn.bam 173475741404 BAM harmonized CPTAC3 c5552d09-5af1-462f-9d39-acc70d4d4de2 f73fa5fbd801a05ecdde1d4d61efab91 {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03051.WGS.T C3N-03051 LSCC WGS tumor CPT0208770006 CPT0208770006.WholeGenome.RP-1303.bam 130121936448 BAM aligned CPTAC3 95120a79-6720-4dcb-af91-ad937b209f2f 4db3c3610818cad2bacd111b597cc770 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor"} -C3N-03051.WGS.T.hg38 C3N-03051 LSCC WGS tumor CPT0208770006 ad04e66f-3736-4e44-bded-696cf702868b_wgs_gdc_realn.bam 188951043592 BAM harmonized CPTAC3 cd5d9762-8fe4-4d55-9ff7-7ca679221f0e 84a03c49d7567a5380b62269be652c00 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor"} -C3N-03051.WXS.A C3N-03051 LSCC WXS tissue_normal CPT0208780006 CPT0208780006.WholeExome.RP-1303.bam 26916282191 BAM aligned CPTAC3 b40090f3-8b82-4286-81fa-d2e2bdce8b4f 69b3bffe8030b74848a6fa6305e433ca {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.WXS.A.hg38 C3N-03051 LSCC WXS tissue_normal CPT0208780006 bf19eeea-ff3a-4752-9ed7-e238a6904122_wxs_gdc_realn.bam 37735258375 BAM harmonized CPTAC3 9496d7cf-0952-4655-badb-8582940aa454 44deed1a3856200aa53b02c064fbeafc {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03051.WXS.N C3N-03051 LSCC WXS blood_normal CPT0208820002 CPT0208820002.WholeExome.RP-1303.bam 28285705412 BAM aligned CPTAC3 3c0af920-88da-47a5-8780-4ba9173c4b84 591b97de1ad4d36abaadc8ef959df6da {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03051.WXS.N.hg38 C3N-03051 LSCC WXS blood_normal CPT0208820002 82120e94-1c95-43ec-8d66-2b7e80777cfc_wxs_gdc_realn.bam 38168656678 BAM harmonized CPTAC3 6090b05d-fc6b-44c2-9a57-d29c1b19d00a bde52408f0e27b79a50e2075f967c3dc {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03051.WXS.T C3N-03051 LSCC WXS tumor CPT0208770006 CPT0208770006.WholeExome.RP-1303.bam 27144433918 BAM aligned CPTAC3 4186c8da-dea1-4339-a252-bffbc9d1f096 edb02365509eb443e51f20c55942b5e4 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor"} -C3N-03051.WXS.T.hg38 C3N-03051 LSCC WXS tumor CPT0208770006 ad04e66f-3736-4e44-bded-696cf702868b_wxs_gdc_realn.bam 37603582485 BAM harmonized CPTAC3 cba55a20-b692-4201-af3a-bac6f2d2d39c 9657f409f470c89fe7b8ed55ac62fd13 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor"} -C3N-03052.MethArray.Green.A C3N-03052 LUAD Methylation_Array tissue_normal CPT0236010007 203561620087_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 76d34181-a3e1-49ca-a362-7c57f8c7f515 99b8447a572b022567d592c9f0de3fb5 {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.MethArray.Green.T C3N-03052 LUAD Methylation_Array tumor CPT0236000012 203561620132_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 504a9610-6f8e-4734-9d33-d27d9f4deef1 41c68251b4fd93f0b7aa2879bca4b4bd {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor"} -C3N-03052.MethArray.Red.A C3N-03052 LUAD Methylation_Array tissue_normal CPT0236010007 203561620087_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 7c52a776-693e-4e79-b89a-e8c4826f5226 17062c1990bda7173afb110a7b283443 {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.MethArray.Red.T C3N-03052 LUAD Methylation_Array tumor CPT0236000012 203561620132_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 e8e0414b-c21b-4f12-9a43-0de4ae21d8ad 27238b66fb8a8ee587075d948c6f50f9 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor"} -C3N-03052.miRNA-Seq.S16_L003_R1.T C3N-03052 LUAD miRNA-Seq tumor CPT0236000019 190813_UNC32-K00270_0196_AH5MCWBBXY_CACGAT_S16_L003_R1_001.unaln.bam 293679585 BAM S16_L003_R1 unaligned CPTAC3 e6244bf5-2255-4158-bbae-390c94294047 344396b6b23733df9662df0e01f827fd {"aliquot_tag": "ALQ_bba9cc77", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03052.miRNA-Seq.T.hg38 C3N-03052 LUAD miRNA-Seq tumor CPT0236000019 5d619839-f14c-4c48-97eb-2ea070df4421_mirnaseq_gdc_realn.bam 325382742 BAM harmonized CPTAC3 a6dafdeb-44bb-4ca1-8dfa-85c390fcba45 f5b5c7855d4aa492c1f73e4b9349c7fa {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor"} -C3N-03052.RNA-Seq.chimeric.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.chimeric.gdc_realn.bam 38816293 BAM chimeric harmonized CPTAC3 b0334e94-b45c-4015-9d60-b95bc9914d13 b388f8597c5b16577a95785759f8d292 {"aliquot_tag": "ALQ_ff155d63", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.RNA-Seq.chimeric.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.chimeric.gdc_realn.bam 41299994 BAM chimeric harmonized CPTAC3 4bf3d2fd-eae3-4126-add0-108122bb1e5d 4e7ee1c6fcb0d910cd2cbab27a36033a {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor"} -C3N-03052.RNA-Seq.genomic.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.genomic.gdc_realn.bam 8988046649 BAM genomic harmonized CPTAC3 043a56ee-d740-4d87-88cb-a7fa5e06d4a2 e32bd1c646232ad4d02fafa516c3dbc4 {"aliquot_tag": "ALQ_ff155d63", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.RNA-Seq.genomic.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.genomic.gdc_realn.bam 10113450937 BAM genomic harmonized CPTAC3 d2e99242-7807-43e7-91b2-53874f08f1bd 5f920005fbd78c743783877e83132b76 {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor"} -C3N-03052.RNA-Seq.S12_L003_R1.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R1_001.fastq.gz 4594305201 FASTQ S12_L003_R1 unaligned CPTAC3 13e423e6-3ec8-4dec-8706-a3c5fbf34991 2009a572201b3ff14ace1ba9f245733f {"aliquot_tag": "ALQ_ff155d63", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.RNA-Seq.S12_L003_R2.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R2_001.fastq.gz 4696624568 FASTQ S12_L003_R2 unaligned CPTAC3 499b8af3-d4ce-4213-8d22-cf84b3a603c6 3830e01d04ac5f03e12519d60e636152 {"aliquot_tag": "ALQ_ff155d63", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.RNA-Seq.S25_L007_R1.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R1_001.fastq.gz 4687840121 FASTQ S25_L007_R1 unaligned CPTAC3 dc08e710-d5b1-44c2-8fdd-8db211a15026 759a0024f9818c101c17860a3bade904 {"aliquot_tag": "ALQ_bba9cc77", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03052.RNA-Seq.S25_L007_R2.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R2_001.fastq.gz 5478049770 FASTQ S25_L007_R2 unaligned CPTAC3 4375ab09-d71c-478a-bbd8-dea4d7355087 8cab340194f5dca2b283daf82ad296ce {"aliquot_tag": "ALQ_bba9cc77", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03052.RNA-Seq.transcriptome.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.transcriptome.gdc_realn.bam 11229824504 BAM transcriptome harmonized CPTAC3 b79831af-8d02-41ad-a32b-0ee041947d57 e099c56048cc2687c921ed3085081705 {"aliquot_tag": "ALQ_ff155d63", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.RNA-Seq.transcriptome.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.transcriptome.gdc_realn.bam 11361956841 BAM transcriptome harmonized CPTAC3 ab2d2cd7-e890-45aa-98b3-11bdf0b21796 4b707566d5da6d1876d62fb9b5b2f704 {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor"} -C3N-03052.WGS.N C3N-03052 LUAD WGS blood_normal CPT0236050002 CPT0236050002.WholeGenome.RP-1303.bam 62386096801 BAM aligned CPTAC3 cb2277bd-3152-4c96-8481-4882be6b8f7e 74d02b0d9326e8305933b2e9c712fcfb {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03052.WGS.N.hg38 C3N-03052 LUAD WGS blood_normal CPT0236050002 1339bb46-f48f-4076-9d91-6fe4d07a4829_wgs_gdc_realn.bam 89532965838 BAM harmonized CPTAC3 4af30506-02d5-4cb4-8d62-41bd655953dd 6daa89f32b071ec0693b6e37096ec212 {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03052.WGS.T C3N-03052 LUAD WGS tumor CPT0236000012 CPT0236000012.WholeGenome.RP-1303.bam 63935047075 BAM aligned CPTAC3 9dccc65f-6ad3-4ac4-9825-8f74599e13ae 18013f3e01b021ff0d269109d003a7b1 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor"} -C3N-03052.WGS.T.hg38 C3N-03052 LUAD WGS tumor CPT0236000012 0d01cdc2-fbd8-497a-b026-d1c3206a5460_wgs_gdc_realn.bam 94784169817 BAM harmonized CPTAC3 6a3deaf9-3782-4853-a05b-9f8b1b491d7f a5cb841ce7a84de30083a8a81b9a01ce {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor"} -C3N-03052.WXS.A C3N-03052 LUAD WXS tissue_normal CPT0236010007 CPT0236010007.WholeExome.RP-1303.bam 23420315981 BAM aligned CPTAC3 1f282b10-f24f-4beb-a78d-3aba644db298 666a2d5d1e714984266ae49e815aa50c {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.WXS.A.hg38 C3N-03052 LUAD WXS tissue_normal CPT0236010007 020eac5c-ddd7-476b-98e8-63c777712152_wxs_gdc_realn.bam 31610092165 BAM harmonized CPTAC3 8d0b8f2a-8a20-4e41-8732-de355c5c766b b0f975bb1f75decb1238fc27b8b605f6 {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03052.WXS.N C3N-03052 LUAD WXS blood_normal CPT0236050002 CPT0236050002.WholeExome.RP-1303.bam 28928625477 BAM aligned CPTAC3 1eb8112e-77bb-46fe-ba58-b99fb8272311 2d6910771ece56a8af77c297778f0a1e {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03052.WXS.N.hg38 C3N-03052 LUAD WXS blood_normal CPT0236050002 1339bb46-f48f-4076-9d91-6fe4d07a4829_wxs_gdc_realn.bam 39836429463 BAM harmonized CPTAC3 41101b08-d76a-45eb-8c3f-90b3cb000ae6 9ee2d79bc036a8fde874790b2fa28512 {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03052.WXS.T C3N-03052 LUAD WXS tumor CPT0236000012 CPT0236000012.WholeExome.RP-1303.bam 29671894680 BAM aligned CPTAC3 36391345-df74-4202-bd8a-3641804fab03 377e52255ad3886fb29fb836796ca8a5 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor"} -C3N-03052.WXS.T.hg38 C3N-03052 LUAD WXS tumor CPT0236000012 0d01cdc2-fbd8-497a-b026-d1c3206a5460_wxs_gdc_realn.bam 40319337640 BAM harmonized CPTAC3 3f756174-4416-4fa9-a819-2c32557bbcb1 849cb6003a368695669fe1d90ad74a01 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor"} -C3N-03054.MethArray.Green.A C3N-03054 LUAD Methylation_Array tissue_normal CPT0236080006 203561620054_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e50635c2-f2a9-49e2-9f7d-17f5d3af9b85 1645e6d577404b70c08d43c9858e4754 {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.MethArray.Green.T C3N-03054 LUAD Methylation_Array tumor CPT0236060006 203561620054_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 31f44e17-f6e0-4d8c-96cb-9b335197e9ff c5407a9f5039cc6686ce24de8e563a49 {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor"} -C3N-03054.MethArray.Red.A C3N-03054 LUAD Methylation_Array tissue_normal CPT0236080006 203561620054_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 65122d3f-d345-45f9-8723-5edfaba53435 472ff9bf89b42d5c703e1e2b8188d30d {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.MethArray.Red.T C3N-03054 LUAD Methylation_Array tumor CPT0236060006 203561620054_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 c5adc01d-501c-4470-89f2-09a3646c4568 d1dfb852accd534bceeb0dbca9d4eb49 {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor"} -C3N-03054.miRNA-Seq.A.hg38 C3N-03054 LUAD miRNA-Seq tissue_normal CPT0236080009 ead04a07-ea49-4cc4-84e8-245109115a40_mirnaseq_gdc_realn.bam 244081600 BAM harmonized CPTAC3 e26f9000-7dfd-4363-a1b1-d24d836a166c 9db9e36496d2e90a4de231e6e3db24d5 {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.miRNA-Seq.S24_L006_R1.A C3N-03054 LUAD miRNA-Seq tissue_normal CPT0236080009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAACTA_S24_L006_R1_001.unaln.bam 211907738 BAM S24_L006_R1 unaligned CPTAC3 febd3d74-d96e-40ec-9937-004f300622c4 31df3c6e7db28dbc994d1385b0f39756 {"aliquot_tag": "ALQ_92c2b6f7", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.miRNA-Seq.S3_L007_R1.T C3N-03054 LUAD miRNA-Seq tumor CPT0236060009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGATC_S3_L007_R1_001.unaln.bam 218856075 BAM S3_L007_R1 unaligned CPTAC3 5d79d89e-10e7-4f9f-a06f-0350a0ee82cf 36f6f7af010ed008b51174224ef83569 {"aliquot_tag": "ALQ_2df20896", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03054.miRNA-Seq.T.hg38 C3N-03054 LUAD miRNA-Seq tumor CPT0236060009 8f375b5f-fc4c-4322-baed-c95e4c6403f8_mirnaseq_gdc_realn.bam 250436803 BAM harmonized CPTAC3 c5932700-6a8b-4e3f-99cc-98564dd0eed5 9944defa65d31833cb4ee58423b02adc {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor"} -C3N-03054.RNA-Seq.chimeric.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.chimeric.gdc_realn.bam 24764477 BAM chimeric harmonized CPTAC3 b0b0b8aa-5817-4215-b667-8d085160b5ce be6c097cc3a6ca1ef04fed823c9d2822 {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.RNA-Seq.chimeric.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.chimeric.gdc_realn.bam 37632979 BAM chimeric harmonized CPTAC3 bfc8546a-44f7-4173-8a30-17a819322974 7ea096193ff3fc9f8c1d3027d2781495 {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor"} -C3N-03054.RNA-Seq.genomic.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.genomic.gdc_realn.bam 9284619401 BAM genomic harmonized CPTAC3 cb5ddba0-abf7-4a03-a36c-c92de1e969b8 f973442f28147d12d7a1c6d45e80f50e {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.RNA-Seq.genomic.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.genomic.gdc_realn.bam 8564235339 BAM genomic harmonized CPTAC3 090cfaf4-7fa3-4224-b5dc-e66770a22542 98b131b14b35dbb72a783ef3c8c93493 {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor"} -C3N-03054.RNA-Seq.S17_L005_R1.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R1_001.fastq.gz 3652802470 FASTQ S17_L005_R1 unaligned CPTAC3 e410c5c9-bd71-433e-a4a4-be0067125c38 b44bfa73d8d3134f4f12ac7df3b9b612 {"aliquot_tag": "ALQ_92c2b6f7", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.RNA-Seq.S17_L005_R2.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R2_001.fastq.gz 4053884389 FASTQ S17_L005_R2 unaligned CPTAC3 6a9cea43-16ec-4a2c-a0f6-d6164247b8db 0974de0d1b8229a11e156516e65b6042 {"aliquot_tag": "ALQ_92c2b6f7", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.RNA-Seq.S5_L002_R1.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3824680817 FASTQ S5_L002_R1 unaligned CPTAC3 13f9b89d-4863-4dae-9128-62d14a2411bf b8578cef465f55bb162ddb92c2704ce2 {"aliquot_tag": "ALQ_2df20896", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03054.RNA-Seq.S5_L002_R2.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 4347757368 FASTQ S5_L002_R2 unaligned CPTAC3 6c788677-7c36-4449-9689-7fda08e3cdb9 769e9d002cda8f53e5fee09cc8719f6d {"aliquot_tag": "ALQ_2df20896", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03054.RNA-Seq.transcriptome.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.transcriptome.gdc_realn.bam 7455769052 BAM transcriptome harmonized CPTAC3 06f0e212-753b-4411-93ae-65aae197ff44 8edfefae6639ac0d364bc24e7fb7e148 {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.RNA-Seq.transcriptome.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.transcriptome.gdc_realn.bam 9317981648 BAM transcriptome harmonized CPTAC3 197d0eb9-2fa5-4564-8abb-8a7b68335b8e 67f5a1009d8e1ae7a407e85722fac776 {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor"} -C3N-03054.WGS.N C3N-03054 LUAD WGS blood_normal CPT0236120002 CPT0236120002.WholeGenome.RP-1303.bam 56226202704 BAM aligned CPTAC3 c09b3a32-2fd6-4014-80ea-8cac321c5d47 3d55bfba47c6941b39b8e000e71e4892 {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03054.WGS.N.hg38 C3N-03054 LUAD WGS blood_normal CPT0236120002 4d74aa49-29f0-4033-a036-95b2fef1a5eb_wgs_gdc_realn.bam 81749702103 BAM harmonized CPTAC3 2dfedb7e-a823-4d30-abde-ad168228f0a5 818ee43342dae5cee5f04f36e8156846 {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03054.WGS.T C3N-03054 LUAD WGS tumor CPT0236060006 CPT0236060006.WholeGenome.RP-1303.bam 76543221622 BAM aligned CPTAC3 2f90603d-0069-4e52-b033-cdaeb34e6db6 0a35dd6ad0e420a6b8f930852e5ad37e {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor"} -C3N-03054.WGS.T.hg38 C3N-03054 LUAD WGS tumor CPT0236060006 8ffbd07c-eec3-4a85-9a3b-f9755f6c152b_wgs_gdc_realn.bam 114445443833 BAM harmonized CPTAC3 15289633-b390-4d50-ac6b-7e80c44820fb 9e2b7b66f923690048298020f75cb6ce {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor"} -C3N-03054.WXS.A C3N-03054 LUAD WXS tissue_normal CPT0236080006 CPT0236080006.WholeExome.RP-1303.bam 21503492343 BAM aligned CPTAC3 5d8ae1fe-1f58-4578-b832-d8d1a57ac4ec 887b30b75f96e426060b166c8d342787 {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.WXS.A.hg38 C3N-03054 LUAD WXS tissue_normal CPT0236080006 b2505914-9985-42f4-a18e-0cf3581c2fa6_wxs_gdc_realn.bam 29923806546 BAM harmonized CPTAC3 e58c09bf-a860-410a-911c-1a923d0dcac4 d07c2c17fdba622cd20ef215103e340f {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03054.WXS.N C3N-03054 LUAD WXS blood_normal CPT0236120002 CPT0236120002.WholeExome.RP-1303.bam 29194749560 BAM aligned CPTAC3 14a7fe3e-c533-487a-9856-6c4bf11d6894 4240a1b9f571547a1cfbf6aa36bee2bf {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03054.WXS.N.hg38 C3N-03054 LUAD WXS blood_normal CPT0236120002 4d74aa49-29f0-4033-a036-95b2fef1a5eb_wxs_gdc_realn.bam 40369272139 BAM harmonized CPTAC3 46aff873-db64-4e7d-99ac-397f176840aa feacabf14a256dd9782d0309dd7e2e50 {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03054.WXS.T C3N-03054 LUAD WXS tumor CPT0236060006 CPT0236060006.WholeExome.RP-1303.bam 27857673488 BAM aligned CPTAC3 87e8ca3c-61b3-4ab8-be47-4a34355e87bc fe98c0db5cdd27de4c33078e6eb53d9a {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor"} -C3N-03054.WXS.T.hg38 C3N-03054 LUAD WXS tumor CPT0236060006 8ffbd07c-eec3-4a85-9a3b-f9755f6c152b_wxs_gdc_realn.bam 38521360150 BAM harmonized CPTAC3 16b3647f-a88d-4836-8f7d-d8dc9b96a133 392a1bd1ea0f44a3c98969ffe5b1a356 {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor"} -C3N-03057.MethArray.Green.T C3N-03057 LUAD Methylation_Array tumor CPT0236210006 203561620086_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 14a064e2-be55-47a8-912f-978dadbd7d13 3d5c1ed15f0ddbcddf425a422e60aede {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor"} -C3N-03057.MethArray.Red.T C3N-03057 LUAD Methylation_Array tumor CPT0236210006 203561620086_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 732013b8-8d19-4385-b6fc-60c4f81911b5 cc216f61bc30f459e7ba3f1e1c90896d {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor"} -C3N-03057.miRNA-Seq.S4_L007_R1.T C3N-03057 LUAD miRNA-Seq tumor CPT0236210009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTTGA_S4_L007_R1_001.unaln.bam 189491000 BAM S4_L007_R1 unaligned CPTAC3 5b73ff17-7b20-40e8-b56d-2bcefe5de810 362e1dde63774b5d603064d6fd1563c0 {"aliquot_tag": "ALQ_d21a758d", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03057.miRNA-Seq.T.hg38 C3N-03057 LUAD miRNA-Seq tumor CPT0236210009 3dca75b2-5007-48fb-bf31-c8bdd6bd66f1_mirnaseq_gdc_realn.bam 210955119 BAM harmonized CPTAC3 facadada-b03d-4d1a-8537-af5dece95301 b0212653ec891f9cfd8258a01f5782e0 {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor"} -C3N-03057.RNA-Seq.chimeric.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.chimeric.gdc_realn.bam 47103982 BAM chimeric harmonized CPTAC3 eed70960-f0d4-4dcb-8e7e-987a62fb99bb 14f16acf463bae8973110dc902add05e {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor"} -C3N-03057.RNA-Seq.genomic.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.genomic.gdc_realn.bam 8872915038 BAM genomic harmonized CPTAC3 4fe2c93b-fc93-4020-8b95-960a5d372ff2 357f29be6286024c531e27f4824937a6 {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor"} -C3N-03057.RNA-Seq.S6_L002_R1.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R1_001.fastq.gz 4117551387 FASTQ S6_L002_R1 unaligned CPTAC3 62175043-4989-4b17-b924-984a6039dc5a fa09cb9528f4c5e681948bdbbd311029 {"aliquot_tag": "ALQ_d21a758d", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03057.RNA-Seq.S6_L002_R2.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R2_001.fastq.gz 4572043529 FASTQ S6_L002_R2 unaligned CPTAC3 167417a5-fae3-4559-93f0-b79a71b966ed 9d04185d9a9598d0b709a7fe4b85b4ad {"aliquot_tag": "ALQ_d21a758d", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03057.RNA-Seq.transcriptome.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.transcriptome.gdc_realn.bam 9041238320 BAM transcriptome harmonized CPTAC3 bf796fb3-25c6-44ec-b0af-d38e617b964f 967ebdc0bdc6a35ffdf04bf7d380f745 {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor"} -C3N-03057.WGS.N C3N-03057 LUAD WGS blood_normal CPT0236260002 CPT0236260002.WholeGenome.RP-1303.bam 95013890438 BAM aligned CPTAC3 c1bc7ccb-2389-4a58-ac3b-801ee5d9194d 01ca684b9a83ad939cb5f188b736988f {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal"} -C3N-03057.WGS.N.hg38 C3N-03057 LUAD WGS blood_normal CPT0236260002 dbc78993-2b74-482d-88be-8085ea35fee9_wgs_gdc_realn.bam 139535062846 BAM harmonized CPTAC3 5f6401d7-dd48-4d0b-9e30-47566d382272 9c54425c8e698984b7aeb1ef75db7dbb {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal"} -C3N-03057.WGS.T C3N-03057 LUAD WGS tumor CPT0236210006 CPT0236210006.WholeGenome.RP-1303.bam 65345440613 BAM aligned CPTAC3 7cba86f7-1983-47e7-a449-9d985527fcec 8d1e44762631a08fdcec43264a42e073 {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor"} -C3N-03057.WGS.T.hg38 C3N-03057 LUAD WGS tumor CPT0236210006 0c743dbe-f104-4309-abe2-29a749e9328e_wgs_gdc_realn.bam 95629349970 BAM harmonized CPTAC3 6b16d325-8ac5-4dc0-8e3a-cb2a8b807339 6d9502204786bfcfe7b95cc2a95fa21c {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor"} -C3N-03057.WXS.N C3N-03057 LUAD WXS blood_normal CPT0236260002 CPT0236260002.WholeExome.RP-1303.bam 26774701055 BAM aligned CPTAC3 d14cb662-e104-478c-a8e3-7e4a722bca5e 41d85379ae9121d3dd06474478d5f35a {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal"} -C3N-03057.WXS.N.hg38 C3N-03057 LUAD WXS blood_normal CPT0236260002 dbc78993-2b74-482d-88be-8085ea35fee9_wxs_gdc_realn.bam 37337114688 BAM harmonized CPTAC3 0bc74f87-946e-4776-9a12-bff546e43138 8b0116b708f12e0e774e665d7b213e71 {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal"} -C3N-03057.WXS.T C3N-03057 LUAD WXS tumor CPT0236210006 CPT0236210006.WholeExome.RP-1303.bam 23230486075 BAM aligned CPTAC3 8f084ad4-9849-46ab-9028-e01208ef88a3 720eda7d676077a391904ed38ef988e6 {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor"} -C3N-03057.WXS.T.hg38 C3N-03057 LUAD WXS tumor CPT0236210006 0c743dbe-f104-4309-abe2-29a749e9328e_wxs_gdc_realn.bam 32037904421 BAM harmonized CPTAC3 5dc2e89c-6805-4326-80a8-9cad8ca53d03 e5e652e25fe204c41a0c27d01838f3ff {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor"} -C3N-03061.MethArray.Green.T C3N-03061 PDA Methylation_Array tumor CPT0208840014 203561620095_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1bb0c0a3-1941-436b-820e-28d08f739599 f278074d7934be1c80c512b5b0a9ead1 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor"} -C3N-03061.MethArray.Red.T C3N-03061 PDA Methylation_Array tumor CPT0208840014 203561620095_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 06a1ed36-2c0e-4b9c-ab7b-05a4065b6816 0d1f828d7b0707454717f49321c83a32 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor"} -C3N-03061.miRNA-Seq.S15_L003_R1.T C3N-03061 PDA miRNA-Seq tumor CPT0208840010 190813_UNC32-K00270_0196_AH5MCWBBXY_CACCGG_S15_L003_R1_001.unaln.bam 265404178 BAM S15_L003_R1 unaligned CPTAC3 5834b137-aefe-4645-a0e8-8fbf192b428b fcefe28a4d1e8b41cf38945417f6fe98 {"aliquot_tag": "ALQ_5162cc0", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03061.miRNA-Seq.T.hg38 C3N-03061 PDA miRNA-Seq tumor CPT0208840010 3df01264-380e-438a-819b-776cc5352a71_mirnaseq_gdc_realn.bam 296386745 BAM harmonized CPTAC3 15730021-257b-4556-a6c9-571aea8709a2 65de5dd5bd08c57a958e8d1ce258cdc8 {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor"} -C3N-03061.RNA-Seq.chimeric.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.chimeric.gdc_realn.bam 37536249 BAM chimeric harmonized CPTAC3 7eed3106-9a4d-411d-9fbc-fb1bc219d15b 1c0d6c73f24c001a18cc61fe3035dc55 {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor"} -C3N-03061.RNA-Seq.genomic.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.genomic.gdc_realn.bam 8824851869 BAM genomic harmonized CPTAC3 8f7f2473-6938-46f4-b2fc-71fc59512f5e 8c0188c1f4f1b245762691cfb08b5d5d {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor"} -C3N-03061.RNA-Seq.S21_L007_R1.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4295719121 FASTQ S21_L007_R1 unaligned CPTAC3 5e04a667-9083-4d39-9933-57dab9a65fd0 991af89cc0d25240e22aa89de3f93905 {"aliquot_tag": "ALQ_5162cc0", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03061.RNA-Seq.S21_L007_R2.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4700486391 FASTQ S21_L007_R2 unaligned CPTAC3 aa4e1900-2a03-4fa4-a3ad-64e9640d8160 6ce35f0c32875fde940a0b3e0e068242 {"aliquot_tag": "ALQ_5162cc0", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03061.RNA-Seq.transcriptome.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.transcriptome.gdc_realn.bam 12109701943 BAM transcriptome harmonized CPTAC3 5ee84d2d-96a9-481d-afa0-f2ef6580ebc8 d00f71e1585bc1890ba47ad6824cefc0 {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor"} -C3N-03061.WGS.N C3N-03061 PDA WGS blood_normal CPT0208890002 CPT0208890002.WholeGenome.RP-1303.bam 62473669927 BAM aligned CPTAC3 254f9980-94a6-4943-b695-9cd3916dc1d3 64b72b2fa0dd71a2beb7ff3540ddceb9 {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03061.WGS.N.hg38 C3N-03061 PDA WGS blood_normal CPT0208890002 6998726a-ed10-46cb-b237-c8d6e332e5e7_wgs_gdc_realn.bam 89283803102 BAM harmonized CPTAC3 6534b876-1ab0-4dad-83c2-261af7341360 cc7fd8075f63ae589b0f02d3ba51d4c6 {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03061.WGS.T C3N-03061 PDA WGS tumor CPT0208840014 CPT0208840014.WholeGenome.RP-1303.PDO-18613.bam 166698493212 BAM aligned CPTAC3 7b04381c-ae32-4424-8595-84c03b728c14 edf0a5146ba996f026210826ff2a6bb2 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor"} -C3N-03061.WGS.T.hg38 C3N-03061 PDA WGS tumor CPT0208840014 eb50829d-9b29-4da9-a8d5-f9e15bd7f912_wgs_gdc_realn.bam 242324119167 BAM harmonized CPTAC3 6fd35ed4-a7ab-42c5-bb92-354942df18b9 25b41f243ba00692663af3c4a86d6146 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor"} -C3N-03061.WXS.N C3N-03061 PDA WXS blood_normal CPT0208890002 CPT0208890002.WholeExome.RP-1303.bam 24951344555 BAM aligned CPTAC3 5188abd8-9cf2-4714-b355-c134241f2020 f9b770dc880b5ce7f788b708c08eeec1 {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03061.WXS.N.hg38 C3N-03061 PDA WXS blood_normal CPT0208890002 6998726a-ed10-46cb-b237-c8d6e332e5e7_wxs_gdc_realn.bam 33883001995 BAM harmonized CPTAC3 9770436b-43be-48f1-a7f1-fe75ba3d0668 b0a2e3ff1bb34894e62b71030856727c {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03061.WXS.T C3N-03061 PDA WXS tumor CPT0208840014 CPT0208840014.WholeExome.RP-1303.bam 30737077158 BAM aligned CPTAC3 2a9e465d-6069-4201-8dac-13a8fb2f6a59 96bfd2945e8781c5458c118f26fdf987 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor"} -C3N-03061.WXS.T.hg38 C3N-03061 PDA WXS tumor CPT0208840014 eb50829d-9b29-4da9-a8d5-f9e15bd7f912_wxs_gdc_realn.bam 41952668631 BAM harmonized CPTAC3 f558f892-5bc9-4660-8770-47c266908e1d 1ae5708b4c6da3d75fb0ef4f36819e05 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor"} -C3N-03063.MethArray.Green.A C3N-03063 LUAD Methylation_Array tissue_normal CPT0208920007 203561450025_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 741411fd-a0e5-4bd8-8ce6-b0a85e5416be 4cc57b2a6f699ee770be9c6b941624d5 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.MethArray.Green.T C3N-03063 LUAD Methylation_Array tumor CPT0208910007 203561450099_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6ec235b1-7c31-4389-a305-56494ce8efb9 11e71eb1781c2debe1ec10033f394884 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor"} -C3N-03063.MethArray.Red.A C3N-03063 LUAD Methylation_Array tissue_normal CPT0208920007 203561450025_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 1ad7c222-4dd7-47e2-af51-1a9ca431cb36 aa36cf2efadb64234d05c7ddf08c7f49 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.MethArray.Red.T C3N-03063 LUAD Methylation_Array tumor CPT0208910007 203561450099_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 130f24ae-c4ed-479e-b78c-930d59306515 39d3e783b4031477382df4c0788090e0 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor"} -C3N-03063.miRNA-Seq.A.hg38 C3N-03063 LUAD miRNA-Seq tissue_normal CPT0208920010 b6314644-a5b5-46fc-84cb-800d8dfcdfe9_mirnaseq_gdc_realn.bam 247863467 BAM harmonized CPTAC3 0562e8d9-ad83-4535-b1f7-3165d69781ca e3eb935d959ee6e9931d0a38c4151d70 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.miRNA-Seq.S160_L007_R1.A C3N-03063 LUAD miRNA-Seq tissue_normal CPT0208920010 190828_UNC32-K00270_0200_BH7GVJBBXY_GGTAGC_S160_L007_R1_001.unaln.bam 219662721 BAM S160_L007_R1 unaligned CPTAC3 70e92cdf-b3f6-4871-a831-8885df82c121 211333f63f025f5114d00db193254d35 {"aliquot_tag": "ALQ_410a0ac5", "sample": "S160", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.miRNA-Seq.S21_L006_R1.T C3N-03063 LUAD miRNA-Seq tumor CPT0208910010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCATTC_S21_L006_R1_001.unaln.bam 147526955 BAM S21_L006_R1 unaligned CPTAC3 d2ce06f2-6809-456a-aa76-1901cf4abd6a 177419d35e7833968df92d49c2a5c5f9 {"aliquot_tag": "ALQ_6aa7015", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03063.miRNA-Seq.T.hg38 C3N-03063 LUAD miRNA-Seq tumor CPT0208910010 2e7cb65b-db54-47b6-8ee3-ec100030a81b_mirnaseq_gdc_realn.bam 163917559 BAM harmonized CPTAC3 6312e993-1688-415c-a868-9a3e20b45f70 d0e4cf38f17b7a925e5226e5d3172baa {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor"} -C3N-03063.RNA-Seq.chimeric.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.chimeric.gdc_realn.bam 68857941 BAM chimeric harmonized CPTAC3 7a014b6b-9b76-401a-a6f2-b829a0e8535e 13d2d6855fb7e904116a92f99e18ade0 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.RNA-Seq.chimeric.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.chimeric.gdc_realn.bam 167767332 BAM chimeric harmonized CPTAC3 d479b632-bb3b-40ee-9f1d-a450c70a9ca9 a5d19eed0586ab44f090b678d0a566b6 {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor"} -C3N-03063.RNA-Seq.genomic.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.genomic.gdc_realn.bam 11149527663 BAM genomic harmonized CPTAC3 22249665-a46d-4106-9e42-c0cdf3585337 ab954792f634ed6ff88456e98a5fd2f3 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.RNA-Seq.genomic.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.genomic.gdc_realn.bam 10134629284 BAM genomic harmonized CPTAC3 4eebffe6-d390-446b-a0f6-0759e319e07a fc5e5d1ba7bf7078378bc7c4f2e4da5a {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor"} -C3N-03063.RNA-Seq.S25_L007_R1.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R1_001.fastq.gz 4806652605 FASTQ S25_L007_R1 unaligned CPTAC3 b34eac8c-0f66-4a29-adaa-93b00a34356f 0290129186317ce5ca3320d18640bfb1 {"aliquot_tag": "ALQ_410a0ac5", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.RNA-Seq.S25_L007_R2.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R2_001.fastq.gz 5341927050 FASTQ S25_L007_R2 unaligned CPTAC3 fa0a60df-c8c2-4710-8d1e-1434c60d0512 c7525919064ffce6e74416058040d1ee {"aliquot_tag": "ALQ_410a0ac5", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.RNA-Seq.S6_L002_R1.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 4109342753 FASTQ S6_L002_R1 unaligned CPTAC3 6679fa70-dcae-4a8a-aec2-8bcf61fade91 302be9adbe9a6d1a7f7b1743be9c5b24 {"aliquot_tag": "ALQ_6aa7015", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03063.RNA-Seq.S6_L002_R2.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 4602913912 FASTQ S6_L002_R2 unaligned CPTAC3 21ed5b07-a68c-4208-86c3-1ccc03374349 fd239be26851bea0717dfeb51ccfac2c {"aliquot_tag": "ALQ_6aa7015", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03063.RNA-Seq.transcriptome.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.transcriptome.gdc_realn.bam 11755174981 BAM transcriptome harmonized CPTAC3 aa40d1c3-a95b-4ee8-b7a5-a01678b90cc3 fb6118c6cd1f9f2a28e653ca19b1bb94 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.RNA-Seq.transcriptome.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.transcriptome.gdc_realn.bam 11093088150 BAM transcriptome harmonized CPTAC3 baabf1a6-2661-4ae7-b99b-5e917be63da6 7e2f5a42bb5c44d827bb1b4e21f93b1c {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor"} -C3N-03063.WGS.N C3N-03063 LUAD WGS blood_normal CPT0208960002 CPT0208960002.WholeGenome.RP-1303.bam 65764363394 BAM aligned CPTAC3 bc694793-1d0b-4772-b8d7-c43fadd1e843 c0a0a89c0b1e9653400b96187f09e669 {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal"} -C3N-03063.WGS.N.hg38 C3N-03063 LUAD WGS blood_normal CPT0208960002 e875c90b-d033-49a9-9159-6e539fa1d1c8_wgs_gdc_realn.bam 97163534453 BAM harmonized CPTAC3 d0dd4cfa-981e-4a0f-a4bb-ecc7b7d0326e 096dd19a9d32193d09ae7bf4f82a5a1c {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal"} -C3N-03063.WGS.T C3N-03063 LUAD WGS tumor CPT0208910007 CPT0208910007.WholeGenome.RP-1303.bam 75325203299 BAM aligned CPTAC3 51153f88-f123-49ad-b797-429dcc767ff6 e2a399c39a5dbe8df2787d66f2efcd68 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor"} -C3N-03063.WGS.T.hg38 C3N-03063 LUAD WGS tumor CPT0208910007 8a9d825a-3b91-4f1d-9110-558ea8c262b7_wgs_gdc_realn.bam 114136149526 BAM harmonized CPTAC3 e6550309-ebc5-4d22-806b-5d55e2d9adf5 1c4459696e45a8e826ee60c3b06eb913 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor"} -C3N-03063.WXS.A C3N-03063 LUAD WXS tissue_normal CPT0208920007 CPT0208920007.WholeExome.RP-1303.bam 23294854400 BAM aligned CPTAC3 8f259b3b-0a7a-42fd-8065-0becf3bcfce1 83945d584599f3af93e7011f00282ca4 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.WXS.A.hg38 C3N-03063 LUAD WXS tissue_normal CPT0208920007 4f879453-e82e-422b-9e39-88f895315f68_wxs_gdc_realn.bam 32626060896 BAM harmonized CPTAC3 5bf3a387-00a0-4ef8-91e2-59a465b7804e 8a07a96a3d8865ffeb276e98eac2c831 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03063.WXS.N C3N-03063 LUAD WXS blood_normal CPT0208960002 CPT0208960002.WholeExome.RP-1303.bam 22728205338 BAM aligned CPTAC3 6862d583-11a9-4bf6-945d-5bc6f0e19867 4ab31593598d2c50f77771c81ee798d5 {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal"} -C3N-03063.WXS.N.hg38 C3N-03063 LUAD WXS blood_normal CPT0208960002 e875c90b-d033-49a9-9159-6e539fa1d1c8_wxs_gdc_realn.bam 31697549049 BAM harmonized CPTAC3 a4d6b0e1-8b70-4ec5-85df-86bea7aab1a4 137da9ae24f399b16373f4d72145c14d {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal"} -C3N-03063.WXS.T C3N-03063 LUAD WXS tumor CPT0208910007 CPT0208910007.WholeExome.RP-1303.bam 21903229868 BAM aligned CPTAC3 60bd7cbd-9ab0-4b76-b66b-78e8c19db6e7 68da457786a695c6a87b8ecb78e97175 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor"} -C3N-03063.WXS.T.hg38 C3N-03063 LUAD WXS tumor CPT0208910007 8a9d825a-3b91-4f1d-9110-558ea8c262b7_wxs_gdc_realn.bam 30000524369 BAM harmonized CPTAC3 4ebcf3c3-00f8-4bb7-bc91-58fd49c21f39 b79dd67efbac1ee4dea1792a19c28dea {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor"} -C3N-03069.MethArray.Green.A C3N-03069 PDA Methylation_Array tissue_normal CPT0236360007 203561450041_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b431f876-2f7c-49f8-8572-eef175ab0d9e b76c5270b13e0266681f32d1788aceeb {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.MethArray.Red.A C3N-03069 PDA Methylation_Array tissue_normal CPT0236360007 203561450041_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 899273ef-d827-4f3c-a817-e0b9b82e6868 d20d7558ac344e0d63e0dd0fe66bf758 {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.miRNA-Seq.A.hg38 C3N-03069 PDA miRNA-Seq tissue_normal CPT0236360010 06fe4c40-1194-445e-9147-bebb2f9e757b_mirnaseq_gdc_realn.bam 222680705 BAM harmonized CPTAC3 8128404e-e360-413e-9f65-94b3075b9d96 d7c5136fc376938a74c0c8f849116f73 {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.miRNA-Seq.S24_L003_R1.A C3N-03069 PDA miRNA-Seq tissue_normal CPT0236360010 190813_UNC32-K00270_0196_AH5MCWBBXY_CTAGCT_S24_L003_R1_001.unaln.bam 194596857 BAM S24_L003_R1 unaligned CPTAC3 371da222-3ab0-4489-a141-e4279767ce8e 63ff7ea21100a5621e5cba7da25f6607 {"aliquot_tag": "ALQ_cba1f3dd", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.miRNA-Seq.S6_L004_R1.T C3N-03069 PDA miRNA-Seq tumor CPT0236340010 190712_UNC32-K00270_0192_BH7HL3BBXY_CACCGG_S6_L004_R1_001.unaln.bam 188644700 BAM S6_L004_R1 unaligned CPTAC3 b6572e73-5fd1-418f-867f-9a8035a3085e ef10d4163a11a746ab481ee78315d1dc {"aliquot_tag": "ALQ_b161a0bd", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03069.miRNA-Seq.T.hg38 C3N-03069 PDA miRNA-Seq tumor CPT0236340010 79cfcd8f-1f31-4e76-a801-3d13c9b4b4ed_mirnaseq_gdc_realn.bam 221535698 BAM harmonized CPTAC3 faa62ea7-b86c-4fea-8612-653486806a1e 1e0b66d6a2a5295174269b4d66e63a3e {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor"} -C3N-03069.RNA-Seq.chimeric.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.chimeric.gdc_realn.bam 26334876 BAM chimeric harmonized CPTAC3 d99bdd41-88da-418f-bc7f-b5457ee24e03 de032e7a6c18a4539156a2f82d377b39 {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.RNA-Seq.chimeric.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.chimeric.gdc_realn.bam 27898218 BAM chimeric harmonized CPTAC3 75125184-1958-4b37-9617-3d98b696718b aefb6fc80654422dea20141609ef72a3 {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor"} -C3N-03069.RNA-Seq.genomic.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.genomic.gdc_realn.bam 8410414316 BAM genomic harmonized CPTAC3 400a7f1b-ded3-42ca-ad20-1acca6f14fbd 3779f4f4155e3195e2c7612e1bdddb0a {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.RNA-Seq.genomic.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.genomic.gdc_realn.bam 7172746382 BAM genomic harmonized CPTAC3 c7303887-8b9c-4a52-a77a-aba76f68cf25 1140d705749eb340de292394c0f01dad {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor"} -C3N-03069.RNA-Seq.S24_L006_R1.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R1_001.fastq.gz 3605633432 FASTQ S24_L006_R1 unaligned CPTAC3 e8194392-ef54-460f-8e23-380d7510dba5 5479de698484af899645faf31186a474 {"aliquot_tag": "ALQ_cba1f3dd", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.RNA-Seq.S24_L006_R2.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R2_001.fastq.gz 4142580685 FASTQ S24_L006_R2 unaligned CPTAC3 43e21637-48dd-473a-8f19-70708526f37d e33f09c824ea3a74ff254b83f1aa5f71 {"aliquot_tag": "ALQ_cba1f3dd", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.RNA-Seq.S25_L006_R1.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R1_001.fastq.gz 3608441806 FASTQ S25_L006_R1 unaligned CPTAC3 96d96f8a-5cee-44ff-a47f-c9ea645e95c9 bcb398a0e8b7d87b0e29e6f9c0a119f8 {"aliquot_tag": "ALQ_b161a0bd", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03069.RNA-Seq.S25_L006_R2.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R2_001.fastq.gz 3702202882 FASTQ S25_L006_R2 unaligned CPTAC3 6d8a21ab-6059-4d0c-ad2e-db57b6574401 e61bb734c47112cf9e956e17a08b645f {"aliquot_tag": "ALQ_b161a0bd", "sample": "S25", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03069.RNA-Seq.transcriptome.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.transcriptome.gdc_realn.bam 10611324381 BAM transcriptome harmonized CPTAC3 15a949d8-e07a-429c-9f1c-79a90779a68c 435181f15558ea6bffe188ee24040f36 {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.RNA-Seq.transcriptome.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.transcriptome.gdc_realn.bam 10932211854 BAM transcriptome harmonized CPTAC3 8e614409-fb33-46ed-a56c-0be5f0e63481 b44959cdf0c32bf6e77936e0a2c1daae {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor"} -C3N-03069.WGS.N C3N-03069 PDA WGS blood_normal CPT0236400002 CPT0236400002.WholeGenome.RP-1303.bam 75260652979 BAM aligned CPTAC3 d4ecce44-d5a2-4c1d-960f-267b860c8765 3a0b448c960498f1a79655b26a777e92 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03069.WGS.N.hg38 C3N-03069 PDA WGS blood_normal CPT0236400002 dc0bc2d5-bdb2-4d41-b372-f885d2c1afac_wgs_gdc_realn.bam 111347008623 BAM harmonized CPTAC3 8af2981f-0b85-44f3-b4e2-4509b8224fb0 5e353f7a6102cbd3d61563e64e9864c2 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03069.WGS.T C3N-03069 PDA WGS tumor CPT0236340006 CPT0236340006.WholeGenome.RP-1303.bam 201439181641 BAM aligned CPTAC3 1f44e41c-59ab-42ec-8418-773039f14cd1 48d0717946c78633754d96f711139541 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor"} -C3N-03069.WGS.T.hg38 C3N-03069 PDA WGS tumor CPT0236340006 74765f27-8118-4176-bce5-2727675c951a_wgs_gdc_realn.bam 294067802472 BAM harmonized CPTAC3 9ad7c0f8-8200-483d-9107-a20785b8f925 a9fe9166baf9ab4273b051377f690110 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor"} -C3N-03069.WXS.A C3N-03069 PDA WXS tissue_normal CPT0236360007 CPT0236360007.WholeExome.RP-1303.bam 30032429165 BAM aligned CPTAC3 f88169b9-1159-435e-a18f-73f53a00036e 4dc492bff0fbbfccda8cba72de5235d5 {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.WXS.A.hg38 C3N-03069 PDA WXS tissue_normal CPT0236360007 385dcc88-6285-479f-8ecf-79750d32f7df_wxs_gdc_realn.bam 41430739196 BAM harmonized CPTAC3 0c48a187-4ec1-402b-bc17-43a0b3d9ccaf 0e4a876887e03f09195545dda75675ff {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03069.WXS.N C3N-03069 PDA WXS blood_normal CPT0236400002 CPT0236400002.WholeExome.RP-1303.bam 24567618773 BAM aligned CPTAC3 ad291a7e-4ce4-4110-a8ee-806007bf1bd1 8cab1d4594c73aa8156738801cb263c6 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03069.WXS.N.hg38 C3N-03069 PDA WXS blood_normal CPT0236400002 dc0bc2d5-bdb2-4d41-b372-f885d2c1afac_wxs_gdc_realn.bam 34218863786 BAM harmonized CPTAC3 78f6aa18-c016-4e21-9dbd-bdfdfe0db193 9bff833a3ccf44abf0c10fb3551d49c4 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03069.WXS.T C3N-03069 PDA WXS tumor CPT0236340006 CPT0236340006.WholeExome.RP-1303.bam 22358595070 BAM aligned CPTAC3 19e1fb27-7c9d-45b0-a334-6d16948f4a54 88599e234e0200283d66742c9e96c145 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor"} -C3N-03069.WXS.T.hg38 C3N-03069 PDA WXS tumor CPT0236340006 74765f27-8118-4176-bce5-2727675c951a_wxs_gdc_realn.bam 30375485125 BAM harmonized CPTAC3 e5d328a6-03a8-4685-af8a-c4a2e51ce843 8dac2d0a18a1fde3936b416159c9e331 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor"} -C3N-03070.MethArray.Green.T C3N-03070 GBM Methylation_Array tumor CPT0208980006 203219650157_R03C01_Grn.idat 13676224 IDAT Green NA CPTAC3 3cf4fce8-2757-47ba-b17b-bc34d8f25f6a da3fa7a1916b3b067931bc372a526fce {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor"} -C3N-03070.MethArray.Red.T C3N-03070 GBM Methylation_Array tumor CPT0208980006 203219650157_R03C01_Red.idat 13676224 IDAT Red NA CPTAC3 13f994e1-3fcb-4a74-bc48-89f038d9741f bc3e305d64bcab3921c74b3ab904b26a {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor"} -C3N-03070.miRNA-Seq.S34_L008_R1.T C3N-03070 GBM miRNA-Seq tumor CPT0208980009 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L008_R1_001.unaln.bam 223702156 BAM S34_L008_R1 unaligned CPTAC3 844fcaef-1192-4374-b269-79a0978dbf50 9f55f021acdcfad01f83df993cd5c27f {"aliquot_tag": "ALQ_6b7d9b81", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03070.miRNA-Seq.T.hg38 C3N-03070 GBM miRNA-Seq tumor CPT0208980009 91cd5d29-e69b-4c71-9acd-3dd8cf7408c0_mirnaseq_gdc_realn.bam 258444867 BAM harmonized CPTAC3 7ff0dad7-4467-4755-8a51-e2ed5381225f 72dc97fb299d85011c235ba7af7f84ee {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor"} -C3N-03070.RNA-Seq.chimeric.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.chimeric.gdc_realn.bam 64797960 BAM chimeric harmonized CPTAC3 5aedc181-b02b-41bc-8058-b83205c22fb9 b4eb21945072436f3a2b59ddd164a319 {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor"} -C3N-03070.RNA-Seq.genomic.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.genomic.gdc_realn.bam 9364809591 BAM genomic harmonized CPTAC3 ea7d19fc-959e-46ac-bbeb-dfd20afb1198 492d022f360b7dc7c46a80f30d296bde {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor"} -C3N-03070.RNA-Seq.S10_L004_R1.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R1_001.fastq.gz 4511670372 FASTQ S10_L004_R1 unaligned CPTAC3 66d938ca-8d17-45b9-834d-a289ed685049 e75d54b9f328dcb4bc9cbf02d2a33ccd {"aliquot_tag": "ALQ_6b7d9b81", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03070.RNA-Seq.S10_L004_R2.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R2_001.fastq.gz 4305537656 FASTQ S10_L004_R2 unaligned CPTAC3 6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff b08b10490f6ae39798bd90b364984d19 {"aliquot_tag": "ALQ_6b7d9b81", "sample": "S10", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03070.RNA-Seq.transcriptome.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.transcriptome.gdc_realn.bam 10809388036 BAM transcriptome harmonized CPTAC3 a8e1ba08-e261-4c50-b2af-fe057d352178 4212f020b0c5bfaf0767356072639f79 {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor"} -C3N-03070.WGS.N C3N-03070 GBM WGS blood_normal CPT0209010002 CPT0209010002.WholeGenome.RP-1303.bam 60352253574 BAM aligned CPTAC3 ec5a3f84-7596-43cf-9be4-b0b4908694c7 e72b51c6260da53fd27bbf963d25436c {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal"} -C3N-03070.WGS.N.hg38 C3N-03070 GBM WGS blood_normal CPT0209010002 13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wgs_gdc_realn.bam 87863624867 BAM harmonized CPTAC3 3b25f0f8-dc89-4946-ac13-cdde820a8595 91c2cf86e41a19383b0223561ec9558c {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal"} -C3N-03070.WGS.T C3N-03070 GBM WGS tumor CPT0208980006 CPT0208980006.WholeGenome.RP-1303.bam 58819746560 BAM aligned CPTAC3 59777ce9-ca51-4abc-88d1-e0dde527fdfe d5df8857a5d23c114984fdcc91a3cdaf {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor"} -C3N-03070.WGS.T.hg38 C3N-03070 GBM WGS tumor CPT0208980006 3d3a5916-ded3-4257-84d2-b71a75547112_wgs_gdc_realn.bam 86267479695 BAM harmonized CPTAC3 067b2d03-0e13-4df8-be26-507de3e5b09d 7746284f8a8ac0c579f6bceb5ed435c9 {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor"} -C3N-03070.WXS.N C3N-03070 GBM WXS blood_normal CPT0209010002 CPT0209010002.WholeExome.RP-1303.bam 25048648491 BAM aligned CPTAC3 dfbe43e5-ff4a-48b3-8b4e-109bb98da402 a262a355d3bb7b808f4065976d79b6ba {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal"} -C3N-03070.WXS.N.hg38 C3N-03070 GBM WXS blood_normal CPT0209010002 13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wxs_gdc_realn.bam 34635416670 BAM harmonized CPTAC3 b1e95f84-e3a5-42e6-8f3c-3c36aa6d8717 bec82cd024ec8eba4df6a9520e9c948f {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal"} -C3N-03070.WXS.T C3N-03070 GBM WXS tumor CPT0208980006 CPT0208980006.WholeExome.RP-1303.bam 27827864765 BAM aligned CPTAC3 8c1c3b19-dc60-42a3-9160-576c41d78609 a5dd0231b1ba3ecd1b6db7af884958c4 {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor"} -C3N-03070.WXS.T.hg38 C3N-03070 GBM WXS tumor CPT0208980006 3d3a5916-ded3-4257-84d2-b71a75547112_wxs_gdc_realn.bam 38712464689 BAM harmonized CPTAC3 cbb19af6-b203-45bb-98a4-7355dab042b9 0b59b31c0f2c86186daefe07efb7ee88 {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor"} -C3N-03072.MethArray.Green.T C3N-03072 LSCC Methylation_Array tumor CPT0209020007 203219650156_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 884fe1f5-eada-4eb0-bc8a-169e07b331cc b1428c6575976c783e40a95f180019d9 {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor"} -C3N-03072.MethArray.Red.T C3N-03072 LSCC Methylation_Array tumor CPT0209020007 203219650156_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1feb99a0-453c-4684-b0c0-96e63498b721 9e410c169d79c64eadfa686a5bd044bd {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor"} -C3N-03072.miRNA-Seq.S25_L002_R1.T C3N-03072 LSCC miRNA-Seq tumor CPT0209020010 190206_UNC31-K00269_0191_AH2WY5BBXY_ATCACG_S25_L002_R1_001.unaln.bam 143815935 BAM S25_L002_R1 unaligned CPTAC3 8b0acf86-f94c-4910-b6e9-2534708ea9c5 da1429a3f68959d065c9cfed85988b76 {"aliquot_tag": "ALQ_c07250b9", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03072.miRNA-Seq.T.hg38 C3N-03072 LSCC miRNA-Seq tumor CPT0209020010 b9d63ad5-3c70-412f-a3fa-d1b3296e76e9_mirnaseq_gdc_realn.bam 165437252 BAM harmonized CPTAC3 6187717e-e2cd-45b3-9957-252ecb61cd39 edf5be064252b9e7f6dccbd18f9fcbdc {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor"} -C3N-03072.RNA-Seq.chimeric.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.chimeric.gdc_realn.bam 89114912 BAM chimeric harmonized CPTAC3 84f45dda-e6cb-41e1-b7e6-432d43142806 41b3ba99e4cd48e1e7b25bc0559260cd {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor"} -C3N-03072.RNA-Seq.genomic.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.genomic.gdc_realn.bam 6422475185 BAM genomic harmonized CPTAC3 15e14059-7090-4f66-b9e2-d8ca154aa3ec a4aae70fb914814b01c4f36c15d6c43d {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor"} -C3N-03072.RNA-Seq.S9_L003_R1.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R1_001.fastq.gz 3100065422 FASTQ S9_L003_R1 unaligned CPTAC3 64aababb-a390-4737-9537-19167b6cba6a 4f676388ac4440f043d5c8a6dbd60c73 {"aliquot_tag": "ALQ_c07250b9", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03072.RNA-Seq.S9_L003_R2.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R2_001.fastq.gz 3084681041 FASTQ S9_L003_R2 unaligned CPTAC3 3afce0c4-ac82-4f80-b237-1a5fd859f8d6 73f1b7e9731f6a676742ee5c24c29389 {"aliquot_tag": "ALQ_c07250b9", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03072.RNA-Seq.transcriptome.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.transcriptome.gdc_realn.bam 7554135157 BAM transcriptome harmonized CPTAC3 9e31f1fe-e3fb-4668-a501-90af96c42df2 776055c9ed03d828e060399f765b5274 {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor"} -C3N-03072.WGS.N C3N-03072 LSCC WGS blood_normal CPT0209080002 CPT0209080002.WholeGenome.RP-1303.bam 104519418611 BAM aligned CPTAC3 150ba2e5-484c-4fd3-8667-d9c6bd66fd81 c1de09dd5637afa0df1203b6f9cad72e {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal"} -C3N-03072.WGS.N.hg38 C3N-03072 LSCC WGS blood_normal CPT0209080002 d1fe7625-edef-4de3-8580-c5a1e327b334_wgs_gdc_realn.bam 151186957717 BAM harmonized CPTAC3 82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f e04c43be840b2df4f2952321c92cdbf4 {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal"} -C3N-03072.WGS.T C3N-03072 LSCC WGS tumor CPT0209020007 CPT0209020007.WholeGenome.RP-1303.bam 106187948821 BAM aligned CPTAC3 38740a22-1efb-4b57-96c4-4b0fe66a141b afb6d9041631c2649d3b99e225ed067a {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor"} -C3N-03072.WGS.T.hg38 C3N-03072 LSCC WGS tumor CPT0209020007 a695af96-c8ba-42aa-8290-8f485ccdbdb2_wgs_gdc_realn.bam 155573604535 BAM harmonized CPTAC3 434ab82e-fa78-47ab-9bc0-60020e63fc04 2abc79f8ba1b51f57587022b1d74f1bc {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor"} -C3N-03072.WXS.N C3N-03072 LSCC WXS blood_normal CPT0209080002 CPT0209080002.WholeExome.RP-1303.bam 24161645438 BAM aligned CPTAC3 44e61428-ae03-46f3-bac0-f4ab8dbf8c97 9809884fdde518b78740d7432681dc55 {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal"} -C3N-03072.WXS.N.hg38 C3N-03072 LSCC WXS blood_normal CPT0209080002 d1fe7625-edef-4de3-8580-c5a1e327b334_wxs_gdc_realn.bam 33951127306 BAM harmonized CPTAC3 35c64665-2925-450f-afc4-cc81d12fab1a 7f3695c7998228aa64fdc545d4aae216 {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal"} -C3N-03072.WXS.T C3N-03072 LSCC WXS tumor CPT0209020007 CPT0209020007.WholeExome.RP-1303.bam 31510409952 BAM aligned CPTAC3 c5fe9c9f-9ed0-41ce-a724-8a028924214f fe65cecb1e45d631f8a42d35cd66d1a6 {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor"} -C3N-03072.WXS.T.hg38 C3N-03072 LSCC WXS tumor CPT0209020007 a695af96-c8ba-42aa-8290-8f485ccdbdb2_wxs_gdc_realn.bam 44490978097 BAM harmonized CPTAC3 ca845ba9-487e-4de6-a202-74ed414d654a d53964a6bfcfb3bd5efbd106eaf1aab3 {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor"} -C3N-03073.MethArray.Green.A C3N-03073 LUAD Methylation_Array tissue_normal CPT0209110006 203561450046_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 fdceb8d2-8743-4a3d-ae2a-865271707435 04c6c049558cb3b8d727c3ad46ce15da {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.MethArray.Green.T C3N-03073 LUAD Methylation_Array tumor CPT0209100006 203561450114_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b43577c3-739c-41a7-8a1a-8db170a2c594 3362f9609ace12df4c31b3e529520ebe {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor"} -C3N-03073.MethArray.Red.A C3N-03073 LUAD Methylation_Array tissue_normal CPT0209110006 203561450046_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 45625f02-0c51-424b-aadf-7a35681153a0 436ee6213aa280c2d50c423244963d24 {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.MethArray.Red.T C3N-03073 LUAD Methylation_Array tumor CPT0209100006 203561450114_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 4fce9541-5697-4617-804d-7ab4b65e093a f9ed602ff3191ae44497f918b12d0ec6 {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor"} -C3N-03073.miRNA-Seq.A.hg38 C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 ffbdabd5-324e-4056-a7f3-6431d450f9b9_mirnaseq_gdc_realn.bam 228036783 BAM harmonized CPTAC3 9ae2eda7-27ae-424f-bf0d-5eab2a473b1c 8ce946d9729702a60b0f94e54fe85112 {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.miRNA-Seq.S46_L006_R1.A C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACCGG_S46_L006_R1_001.unaln.bam 202343629 BAM S46_L006_R1 unaligned CPTAC3 01557f5c-1498-49a7-8ca0-5dcad0b64f33 13574c90c1617978e20b24d09a845807 {"aliquot_tag": "ALQ_2c497029", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.miRNA-Seq.S5_L007_R1.T C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L007_R1_001.unaln.bam 170217266 BAM S5_L007_R1 unaligned CPTAC3 18b12ad5-0a48-44b0-968f-591fb185fdd2 8b1a42d611e97eda7ebc1f6a62ac43ed {"aliquot_tag": "ALQ_11295999", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03073.miRNA-Seq.T.hg38 C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 e34f41ee-9783-4baf-8d2d-fc7805d96c18_mirnaseq_gdc_realn.bam 188336343 BAM harmonized CPTAC3 738af13e-57ad-4e5c-b246-ab70bdabd56d 5660f0d2176d918c04d894de78f028c0 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor"} -C3N-03073.RNA-Seq.chimeric.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.chimeric.gdc_realn.bam 27899026 BAM chimeric harmonized CPTAC3 dc607152-916f-47a1-8b24-3ab84f5d68a9 541814f518a906c21b561d6e034022f2 {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.RNA-Seq.chimeric.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.chimeric.gdc_realn.bam 33236511 BAM chimeric harmonized CPTAC3 64d95282-ad18-45f6-843d-c94b0a3951d4 94ea88efc08f3f7f5ef483fc894c30a1 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor"} -C3N-03073.RNA-Seq.genomic.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.genomic.gdc_realn.bam 9933597174 BAM genomic harmonized CPTAC3 007b4be0-dbf1-4bc9-99d3-eafb1a55024b d6b2ef939f30e77ec5bf8c6cd1afe581 {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.RNA-Seq.genomic.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.genomic.gdc_realn.bam 11466962894 BAM genomic harmonized CPTAC3 286b437a-a5f7-4a00-a748-12827962e427 ed7736f1c0dbb0d6f5614427f4433233 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor"} -C3N-03073.RNA-Seq.S20_L005_R1.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R1_001.fastq.gz 3911246975 FASTQ S20_L005_R1 unaligned CPTAC3 b203accd-ac6f-4096-8b45-578c7365a462 d170a586b02bbee5b6f5024e1fa0f099 {"aliquot_tag": "ALQ_2c497029", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.RNA-Seq.S20_L005_R2.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R2_001.fastq.gz 4309621063 FASTQ S20_L005_R2 unaligned CPTAC3 9af1321e-4672-466f-b1b3-8365ead84c06 67ca931174ca001eb9035638ef01e72f {"aliquot_tag": "ALQ_2c497029", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.RNA-Seq.S7_L002_R1.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R1_001.fastq.gz 4110997799 FASTQ S7_L002_R1 unaligned CPTAC3 9d4ad6ac-66af-4216-8aa2-40531e6b3c32 014ad50c2ad11b2e7c2efc343a053957 {"aliquot_tag": "ALQ_11295999", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03073.RNA-Seq.S7_L002_R2.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R2_001.fastq.gz 4794736220 FASTQ S7_L002_R2 unaligned CPTAC3 7a4ecbb4-b7db-4bef-8933-bcee1d84a4d0 c710d856664107b9375d7de6cfc793f5 {"aliquot_tag": "ALQ_11295999", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03073.RNA-Seq.transcriptome.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.transcriptome.gdc_realn.bam 8816259472 BAM transcriptome harmonized CPTAC3 b1a22f4d-1b5d-4aef-894f-cf83f04beba9 a59833a0f149bb70b318f7b92be644db {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.RNA-Seq.transcriptome.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.transcriptome.gdc_realn.bam 9114675396 BAM transcriptome harmonized CPTAC3 e807f199-ce40-4f5f-891b-3672b2b3b7f0 d32bbae5cd76a9cbd2fa5ebb183f2697 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor"} -C3N-03073.WGS.N C3N-03073 LUAD WGS blood_normal CPT0209150002 CPT0209150002.WholeGenome.RP-1303.bam 75684433012 BAM aligned CPTAC3 fcc128a4-b9ac-4ac5-80b9-9189c034e456 0d90f2da059479499497f4d4a52eab77 {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal"} -C3N-03073.WGS.N.hg38 C3N-03073 LUAD WGS blood_normal CPT0209150002 d640799e-ed19-4c36-bb6c-7642f28e080a_wgs_gdc_realn.bam 109719914284 BAM harmonized CPTAC3 da91d771-6aa6-477a-8ebf-0e8922f3955b 3befd9b660d625308b62ae041be39d05 {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal"} -C3N-03073.WGS.T C3N-03073 LUAD WGS tumor CPT0209100006 CPT0209100006.WholeGenome.RP-1303.bam 80741529480 BAM aligned CPTAC3 92c2a453-112d-4d60-a320-f7b81fad9d15 5188320261e8f7c3b46836fea2c28c77 {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor"} -C3N-03073.WGS.T.hg38 C3N-03073 LUAD WGS tumor CPT0209100006 0de194e7-cd6e-42b7-b1bc-26838dfa9f15_wgs_gdc_realn.bam 117599026378 BAM harmonized CPTAC3 d639f87e-d562-4253-8c9b-794700a6cdac 3942911a6bed1e564fb9ae6c70b5fd2b {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor"} -C3N-03073.WXS.A C3N-03073 LUAD WXS tissue_normal CPT0209110006 CPT0209110006.WholeExome.RP-1303.bam 25065215466 BAM aligned CPTAC3 32af4cc5-e85b-4161-8949-f90b56fbf54c dcd9623658aadb5b81ef82a208e35be8 {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.WXS.A.hg38 C3N-03073 LUAD WXS tissue_normal CPT0209110006 78689c3d-5805-4bba-92e6-b6adb0b3ef33_wxs_gdc_realn.bam 34864563871 BAM harmonized CPTAC3 08719668-6ac9-448f-9d0a-ed2c52706f44 bc3fb5f9ad359d269c0dd5fe3a79ab7a {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03073.WXS.N C3N-03073 LUAD WXS blood_normal CPT0209150002 CPT0209150002.WholeExome.RP-1303.bam 42272286622 BAM aligned CPTAC3 e916cb57-68d8-4cef-afe7-4975dc0d9728 108c3fd6a4a6398aa81859acd5fda47a {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal"} -C3N-03073.WXS.N.hg38 C3N-03073 LUAD WXS blood_normal CPT0209150002 d640799e-ed19-4c36-bb6c-7642f28e080a_wxs_gdc_realn.bam 58249255363 BAM harmonized CPTAC3 322f55df-1f82-414a-97ea-ce488d1523e6 866492591cee0c9011e3f67462a544ea {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal"} -C3N-03073.WXS.T C3N-03073 LUAD WXS tumor CPT0209100006 CPT0209100006.WholeExome.RP-1303.bam 28659836430 BAM aligned CPTAC3 4e59241f-cf31-4ccf-86fb-385090e23d4f 0d2d5b795efbc24e0079559fa378a7e4 {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor"} -C3N-03073.WXS.T.hg38 C3N-03073 LUAD WXS tumor CPT0209100006 0de194e7-cd6e-42b7-b1bc-26838dfa9f15_wxs_gdc_realn.bam 39205976435 BAM harmonized CPTAC3 6e7ae3a9-5ab3-46a9-a97f-1eba712c2495 fe36a044d891c597c3c9ff6cf07fd62c {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor"} -C3N-03074.MethArray.Green.A C3N-03074 LUAD Methylation_Array tissue_normal CPT0209180006 203561450014_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b35d9e57-b5c0-4699-adc3-c38286a01611 8b9f32e013d7846d79bc759b5c92cc5f {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.MethArray.Green.T C3N-03074 LUAD Methylation_Array tumor CPT0209170006 203561620016_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c8c5b0db-fed6-40c1-a38e-6fc2f0bcb9b8 dcaa0e6d9bc3f1b122848932b68e3785 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor"} -C3N-03074.MethArray.Red.A C3N-03074 LUAD Methylation_Array tissue_normal CPT0209180006 203561450014_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 2b4e9936-93ae-4153-8b74-77e284b386e8 afea1b7e443780bda269b08b8bdcfc34 {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.MethArray.Red.T C3N-03074 LUAD Methylation_Array tumor CPT0209170006 203561620016_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 9fb2756a-cfb4-44fd-9d21-fecd55a440cb 2975bf49d40fc613670291de065f79fa {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor"} -C3N-03074.miRNA-Seq.A.hg38 C3N-03074 LUAD miRNA-Seq tissue_normal CPT0209180009 b9eda05c-0b15-4a7c-8102-0e68a6678c55_mirnaseq_gdc_realn.bam 235210508 BAM harmonized CPTAC3 31e5bf53-49fd-4418-a8a4-7fcc3c1c1925 f80b7e8e27c450d0e67319288600fb4f {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.miRNA-Seq.S25_L006_R1.A C3N-03074 LUAD miRNA-Seq tissue_normal CPT0209180009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACGAT_S25_L006_R1_001.unaln.bam 206199886 BAM S25_L006_R1 unaligned CPTAC3 d2bd6684-6d13-4b77-8114-f9e0017d555b aacae5939b862421da180e3abc44d2a1 {"aliquot_tag": "ALQ_21591258", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.miRNA-Seq.S6_L007_R1.T C3N-03074 LUAD miRNA-Seq tumor CPT0209170009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAGCTT_S6_L007_R1_001.unaln.bam 192041758 BAM S6_L007_R1 unaligned CPTAC3 8f1dacf8-e6cf-46f9-bb9e-69e2f2207807 8c91e2041a55041383079daded65023f {"aliquot_tag": "ALQ_a3098589", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03074.miRNA-Seq.T.hg38 C3N-03074 LUAD miRNA-Seq tumor CPT0209170009 d0422da4-aa0a-46e6-81eb-9242f5e6c894_mirnaseq_gdc_realn.bam 214810185 BAM harmonized CPTAC3 d9e0c3da-f70a-49f5-87f4-092ac3640a0d 795490028c102d5f40aa104216825d6d {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor"} -C3N-03074.RNA-Seq.chimeric.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.chimeric.gdc_realn.bam 30784633 BAM chimeric harmonized CPTAC3 9c785892-c352-468a-b79d-84e7179d095b 12275cd2d5f4d36237f7c6c0253bf903 {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.RNA-Seq.chimeric.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.chimeric.gdc_realn.bam 31114227 BAM chimeric harmonized CPTAC3 7db9cabe-2fcb-4054-829a-dacd64a307dd 2190189e6df4866c360844ae8541ad48 {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor"} -C3N-03074.RNA-Seq.genomic.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.genomic.gdc_realn.bam 9185051440 BAM genomic harmonized CPTAC3 28a88dca-16c5-4dae-bab2-5d298b541686 5a3441d09d0986ad1ff7c4c18887f2fa {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.RNA-Seq.genomic.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.genomic.gdc_realn.bam 12966177421 BAM genomic harmonized CPTAC3 af1da9d1-dc9d-41e5-bcdd-73bbd01f0eaf 936d8806ebf29fd966d353ddb2454bb8 {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor"} -C3N-03074.RNA-Seq.S1_L001_R1.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3794109313 FASTQ S1_L001_R1 unaligned CPTAC3 8f4c0806-05ff-4a2e-bddf-0536970bb83a 8cb13d466d5dff87677b06d3595a3dae {"aliquot_tag": "ALQ_21591258", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.RNA-Seq.S1_L001_R2.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4389053383 FASTQ S1_L001_R2 unaligned CPTAC3 357f1496-fdf7-4cb8-af26-a3f6764def24 4bed21a3d3ee83280920c650cf9c18bb {"aliquot_tag": "ALQ_21591258", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.RNA-Seq.S8_L002_R1.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R1_001.fastq.gz 4490953808 FASTQ S8_L002_R1 unaligned CPTAC3 3ae242c5-e591-4e09-b4df-b36c90d9045b 19a4e43eeb2bde20d839dd4ba379d52f {"aliquot_tag": "ALQ_a3098589", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03074.RNA-Seq.S8_L002_R2.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R2_001.fastq.gz 5068296542 FASTQ S8_L002_R2 unaligned CPTAC3 92a8f144-e2fe-44a0-9ebd-b739f67bacc2 acb6d551810e1727c1e892510825efbc {"aliquot_tag": "ALQ_a3098589", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03074.RNA-Seq.transcriptome.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.transcriptome.gdc_realn.bam 8763522837 BAM transcriptome harmonized CPTAC3 24d3be2e-fa09-46ea-9bad-2437bb9e5624 4130826fa752f3166764b82fb42dc3ae {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.RNA-Seq.transcriptome.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.transcriptome.gdc_realn.bam 12068779649 BAM transcriptome harmonized CPTAC3 2ee5637e-e34f-4b34-8471-ff5c58172bf8 222ee265c37f911ad6765e38736f228e {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor"} -C3N-03074.WGS.N C3N-03074 LUAD WGS blood_normal CPT0209220002 CPT0209220002.WholeGenome.RP-1303.bam 56749986644 BAM aligned CPTAC3 83baf41c-333f-4983-9e18-91c0597987a2 87832c1e34c4c2850f8d2fcd2356d288 {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal"} -C3N-03074.WGS.N.hg38 C3N-03074 LUAD WGS blood_normal CPT0209220002 8f87622c-43e3-4176-849f-8334b1a8eefa_wgs_gdc_realn.bam 81937168422 BAM harmonized CPTAC3 9cc38e27-d6da-4b5b-ba25-c39f54c4fc3e 596e85c52395897d35710c823cf157e1 {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal"} -C3N-03074.WGS.T C3N-03074 LUAD WGS tumor CPT0209170006 CPT0209170006.WholeGenome.RP-1303.bam 77270373127 BAM aligned CPTAC3 2f460243-5887-4451-b7c7-c75d9e38a484 2030e1d591de29a56842af643c43ced5 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor"} -C3N-03074.WGS.T.hg38 C3N-03074 LUAD WGS tumor CPT0209170006 9323ca12-aefe-4fa5-ab15-e9b3a8e68fa3_wgs_gdc_realn.bam 112346162964 BAM harmonized CPTAC3 e394b658-0cbe-4fac-a874-79f48a6029bf 2790a96cd1abf891d07ac3daa05cbc56 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor"} -C3N-03074.WXS.A C3N-03074 LUAD WXS tissue_normal CPT0209180006 CPT0209180006.WholeExome.RP-1303.bam 21119733647 BAM aligned CPTAC3 7d80c776-adcb-46fd-ba05-220561018c52 3e8ac9fcce27634dc908be02b496016d {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.WXS.A.hg38 C3N-03074 LUAD WXS tissue_normal CPT0209180006 aea871d6-0a8c-4ff9-b297-7939b1889468_wxs_gdc_realn.bam 28860718671 BAM harmonized CPTAC3 42492b65-2c2c-46b9-867b-6d667ed52774 2db0fa44bb7ef6e85b5de1797a7c5725 {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03074.WXS.N C3N-03074 LUAD WXS blood_normal CPT0209220002 CPT0209220002.WholeExome.RP-1303.bam 28347154390 BAM aligned CPTAC3 a3184efc-2a29-496a-819e-f164913dc7ed 68533bae295fdaf4669a1f47f71d6e0d {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal"} -C3N-03074.WXS.N.hg38 C3N-03074 LUAD WXS blood_normal CPT0209220002 8f87622c-43e3-4176-849f-8334b1a8eefa_wxs_gdc_realn.bam 39083322636 BAM harmonized CPTAC3 e824b25d-5e59-4890-bc67-0b8b6a74ea2a ecedfd2f58e045c1e4b466965530fce6 {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal"} -C3N-03074.WXS.T C3N-03074 LUAD WXS tumor CPT0209170006 CPT0209170006.WholeExome.RP-1303.bam 28242160212 BAM aligned CPTAC3 1b053b22-2f39-40c7-b690-6a380fbf13a9 552f4fd597cda0480f58fbf1f7f9f321 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor"} -C3N-03074.WXS.T.hg38 C3N-03074 LUAD WXS tumor CPT0209170006 9323ca12-aefe-4fa5-ab15-e9b3a8e68fa3_wxs_gdc_realn.bam 39175292582 BAM harmonized CPTAC3 7778c84e-34d6-4984-8bc7-0b3566f61bab 6e72a314f6606a0589732cd51cf89202 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor"} -C3N-03076.MethArray.Green.A C3N-03076 LSCC Methylation_Array tissue_normal CPT0236430009 203219670054_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 08f6bc53-4942-4aea-ab9e-416ea9c1e8a5 7f61f0ecb5d16c6ebb7c220f3aa81ff8 {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.MethArray.Green.T C3N-03076 LSCC Methylation_Array tumor CPT0236420006 203219640157_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b0fdd4d5-57cc-4d47-80f7-f24449b41c50 5f9b79340c2d8b3a46dfb74ac82c5f90 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor"} -C3N-03076.MethArray.Red.A C3N-03076 LSCC Methylation_Array tissue_normal CPT0236430009 203219670054_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 840bc381-4193-4a90-b3cb-fbb5314b1c1b 808316543a406647c3b8675830692973 {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.MethArray.Red.T C3N-03076 LSCC Methylation_Array tumor CPT0236420006 203219640157_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 0119b71b-f145-4f16-8aab-2c665ed71bd0 2b01a4a9f53183f7b809d96b8f51484b {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor"} -C3N-03076.miRNA-Seq.A.hg38 C3N-03076 LSCC miRNA-Seq tissue_normal CPT0236430006 c4a0b93c-ee2f-4e2e-8c07-73e0095934b3_mirnaseq_gdc_realn.bam 164982455 BAM harmonized CPTAC3 dc99bba6-cc18-4152-83fe-aa0243198b95 07aa3eb6650ac549edf2d32d8d7a9dce {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.miRNA-Seq.S23_L005_R1.A C3N-03076 LSCC miRNA-Seq tissue_normal CPT0236430006 190206_UNC31-K00269_0191_AH2WY5BBXY_CAAAAG_S23_L005_R1_001.unaln.bam 144320025 BAM S23_L005_R1 unaligned CPTAC3 c46b0474-2f84-40c8-b37f-789dfde924ae e11c6e2b7c093c70ca3dab531f7bec10 {"aliquot_tag": "ALQ_ee3cd861", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.miRNA-Seq.S35_L004_R1.T C3N-03076 LSCC miRNA-Seq tumor CPT0236420009 190206_UNC31-K00269_0191_AH2WY5BBXY_AGTTCC_S35_L004_R1_001.unaln.bam 186481355 BAM S35_L004_R1 unaligned CPTAC3 3355dc8a-bd78-4913-85af-9a4b5641123a 3e02580d0ba7bc11f91dffe7d9aee12c {"aliquot_tag": "ALQ_43e3ec40", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03076.miRNA-Seq.T.hg38 C3N-03076 LSCC miRNA-Seq tumor CPT0236420009 45475ad6-f20c-4898-ad2e-8009094f8007_mirnaseq_gdc_realn.bam 207419802 BAM harmonized CPTAC3 3565414e-e943-46d2-95a8-c1b070b280d6 f43fb610a131b508b85265e7a3126fba {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor"} -C3N-03076.RNA-Seq.chimeric.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.chimeric.gdc_realn.bam 233176306 BAM chimeric harmonized CPTAC3 a6ecae89-75c2-4883-ab53-8fcf945b18f1 638917fb422b6df1ba237bda1142cb25 {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.RNA-Seq.chimeric.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.chimeric.gdc_realn.bam 150663677 BAM chimeric harmonized CPTAC3 0fd3be3d-4097-41fd-b300-d34622f785fc 8dc85a7794da0ce38faf85818a186809 {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor"} -C3N-03076.RNA-Seq.genomic.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.genomic.gdc_realn.bam 8731433766 BAM genomic harmonized CPTAC3 909e344b-5a0c-4192-822c-c39e838b65ea 4560d16ca0f4c3fc39a93a26c495f492 {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.RNA-Seq.genomic.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.genomic.gdc_realn.bam 9035335308 BAM genomic harmonized CPTAC3 55b77a73-72f7-455b-904f-083638014cf6 414cda7e6acb139017d12c0c62da4089 {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor"} -C3N-03076.RNA-Seq.S20_L005_R1.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R1_001.fastq.gz 4227933734 FASTQ S20_L005_R1 unaligned CPTAC3 5ee88db7-c799-43d9-9578-ff5566d16417 4f6b6bd22bccc97bbe8631771df3a08b {"aliquot_tag": "ALQ_ee3cd861", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.RNA-Seq.S20_L005_R2.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R2_001.fastq.gz 4525794989 FASTQ S20_L005_R2 unaligned CPTAC3 3d0d598c-b5ed-439f-996e-952992e8d2af ebde4e7fb57855e8d8aa36227cad780b {"aliquot_tag": "ALQ_ee3cd861", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.RNA-Seq.S8_L002_R1.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R1_001.fastq.gz 4328238119 FASTQ S8_L002_R1 unaligned CPTAC3 7395d897-f8bf-4128-a34d-ef3377758429 7c62fc4fd360bd196be0c2bb12845ba8 {"aliquot_tag": "ALQ_43e3ec40", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03076.RNA-Seq.S8_L002_R2.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R2_001.fastq.gz 4736270009 FASTQ S8_L002_R2 unaligned CPTAC3 309c50cf-2f39-4052-b219-bae8da306732 bc6d09d2791b8f830f4a7768433909bb {"aliquot_tag": "ALQ_43e3ec40", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03076.RNA-Seq.transcriptome.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.transcriptome.gdc_realn.bam 10252350165 BAM transcriptome harmonized CPTAC3 622ffe04-3eed-469b-9ffd-59d923c64ebd dc1c3cbb82a89d3f7d60af100d7a134b {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.RNA-Seq.transcriptome.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.transcriptome.gdc_realn.bam 11059712276 BAM transcriptome harmonized CPTAC3 3c6c1ba5-4759-4c8a-9720-6b2bb3848ed0 6ead5aac64a4618396247f04370f94a0 {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor"} -C3N-03076.WGS.N C3N-03076 LSCC WGS blood_normal CPT0236470002 CPT0236470002.WholeGenome.RP-1303.bam 99289397934 BAM aligned CPTAC3 cdeefe38-0102-49ec-853e-f8332817d2e2 e772814d63980ed415355c27dd181f39 {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03076.WGS.N.hg38 C3N-03076 LSCC WGS blood_normal CPT0236470002 fd173e62-56bf-400c-a27f-4109dc0d92d5_wgs_gdc_realn.bam 144925177216 BAM harmonized CPTAC3 67ebae8e-90b8-46d9-a98a-aec6cd48fc07 3d400ce6af671d836d8ba94797b4ed5b {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03076.WGS.T C3N-03076 LSCC WGS tumor CPT0236420006 CPT0236420006.WholeGenome.RP-1303.bam 103800227186 BAM aligned CPTAC3 95f82e39-8ace-4231-a954-d3c590871391 6fa7e6281fc3470ac5f302e088449992 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor"} -C3N-03076.WGS.T.hg38 C3N-03076 LSCC WGS tumor CPT0236420006 dba1ce27-57d7-4430-af83-f44f7cf2b203_wgs_gdc_realn.bam 151198895596 BAM harmonized CPTAC3 a2be4eb8-4ecb-4d63-bb32-287fade4fcde 53d646d4e7fa810390eaa6a58e882ca3 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor"} -C3N-03076.WXS.A C3N-03076 LSCC WXS tissue_normal CPT0236430009 CPT0236430009.WholeExome.RP-1303.bam 18908698766 BAM aligned CPTAC3 d0058d16-eb15-4ed5-b10a-a4337212af93 732989783b67a915bc9a54dfd77f160d {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.WXS.A.hg38 C3N-03076 LSCC WXS tissue_normal CPT0236430009 0cecf91e-74ab-4e4b-93b4-4ea32fc0b1c1_wxs_gdc_realn.bam 26287305454 BAM harmonized CPTAC3 2940e6cd-809f-4dfd-839c-d27dbc1e4f60 ff405952eefa57c34bac3a79f43d2369 {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03076.WXS.N C3N-03076 LSCC WXS blood_normal CPT0236470002 CPT0236470002.WholeExome.RP-1303.bam 29372109811 BAM aligned CPTAC3 54f47a3f-9652-4c99-800c-ae96b7096afa b14e37e77c4784b295d254758a101797 {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03076.WXS.N.hg38 C3N-03076 LSCC WXS blood_normal CPT0236470002 fd173e62-56bf-400c-a27f-4109dc0d92d5_wxs_gdc_realn.bam 40495867933 BAM harmonized CPTAC3 ace21e30-003b-49dc-872f-eaa91c86810a 8818c4cf068067a4cf7952f53bec7d50 {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03076.WXS.T C3N-03076 LSCC WXS tumor CPT0236420006 CPT0236420006.WholeExome.RP-1303.bam 26230348551 BAM aligned CPTAC3 49ce40fb-c001-42fb-a744-1da1d62f115d 71c559733f33f1778c3e4b4f0dd1a4f9 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor"} -C3N-03076.WXS.T.hg38 C3N-03076 LSCC WXS tumor CPT0236420006 dba1ce27-57d7-4430-af83-f44f7cf2b203_wxs_gdc_realn.bam 36607213627 BAM harmonized CPTAC3 d0ccfe79-5602-4b42-a886-e15b014b74c3 c2a6c30471a442d55712fbd58dcfe46f {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor"} -C3N-03080.MethArray.Green.A C3N-03080 LUAD Methylation_Array tissue_normal CPT0209250006 203561620053_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 316e1540-2236-4362-af5d-6c2a53e4e148 87c0c810843e629da6dfd9682e2ca6e4 {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.MethArray.Green.T C3N-03080 LUAD Methylation_Array tumor CPT0209240006 203561620159_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7cad4b8e-f0df-4829-9d7c-928e93b3fe31 e2f8729b2488584300c5e79105f536a7 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor"} -C3N-03080.MethArray.Red.A C3N-03080 LUAD Methylation_Array tissue_normal CPT0209250006 203561620053_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 514ce781-9b02-4f73-b8d1-7e3b4c869c79 fdecc9cb0221dfd22badf7f7ef6bea52 {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.MethArray.Red.T C3N-03080 LUAD Methylation_Array tumor CPT0209240006 203561620159_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 48c0c11c-7c79-4bed-9ab8-ad94fb89faf3 b57c87b5c95d9c7cba0e913f5298f9bd {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor"} -C3N-03080.miRNA-Seq.A.hg38 C3N-03080 LUAD miRNA-Seq tissue_normal CPT0209250009 a417e5f4-a52d-4840-9c68-40d46d600efe_mirnaseq_gdc_realn.bam 243596760 BAM harmonized CPTAC3 a7a1f91f-8378-498e-9c3a-67634a003e5c f85f77d32a55437761d674e9b034f948 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.miRNA-Seq.S26_L006_R1.A C3N-03080 LUAD miRNA-Seq tissue_normal CPT0209250009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACTCA_S26_L006_R1_001.unaln.bam 214502432 BAM S26_L006_R1 unaligned CPTAC3 8ea5ccf3-6cd8-444a-9d17-e580c3bc3142 fea6ca8aa4741ace7a6a43bb5454b21e {"aliquot_tag": "ALQ_5f5da447", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.miRNA-Seq.S7_L007_R1.T C3N-03080 LUAD miRNA-Seq tumor CPT0209240009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGCTAC_S7_L007_R1_001.unaln.bam 200236995 BAM S7_L007_R1 unaligned CPTAC3 0d555002-c695-4718-a764-13fa8f70e966 14734344530ede8a3237142d4b9cf95a {"aliquot_tag": "ALQ_623d8df7", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03080.miRNA-Seq.T.hg38 C3N-03080 LUAD miRNA-Seq tumor CPT0209240009 b0459e96-05ee-4005-9375-33053d937313_mirnaseq_gdc_realn.bam 220852438 BAM harmonized CPTAC3 db01b4e7-daf3-499e-828e-3a73ff98fdfd 382e846674ea831733ba9fee1ee0c7bd {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor"} -C3N-03080.RNA-Seq.chimeric.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.chimeric.gdc_realn.bam 37338669 BAM chimeric harmonized CPTAC3 f39fe48b-c328-4497-9feb-c4da2d76d3af 72deb8f5183f4e1df5385c5828c5cc83 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.RNA-Seq.chimeric.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.chimeric.gdc_realn.bam 34381938 BAM chimeric harmonized CPTAC3 02a9fa67-a3f0-42fa-9583-8a76a6a06060 ba957c7bf38d58e19ea99c01456f0eac {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor"} -C3N-03080.RNA-Seq.genomic.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.genomic.gdc_realn.bam 10546395059 BAM genomic harmonized CPTAC3 70a510df-9deb-4e1d-81b8-98c85d772502 8922511380a64c2035045f9a6dd9afb6 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.RNA-Seq.genomic.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.genomic.gdc_realn.bam 10961859757 BAM genomic harmonized CPTAC3 3d9772e3-5320-4937-a441-908dbdb66e7e ce789d55b32c3d80cbd48ebc0756b1d0 {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor"} -C3N-03080.RNA-Seq.S2_L001_R1.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R1_001.fastq.gz 4690559849 FASTQ S2_L001_R1 unaligned CPTAC3 734aef7a-3a16-4318-b0d5-772fea337fed e46aa8dd62f7f2b4a472adb278ddf965 {"aliquot_tag": "ALQ_5f5da447", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.RNA-Seq.S2_L001_R2.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R2_001.fastq.gz 5156485456 FASTQ S2_L001_R2 unaligned CPTAC3 70282169-1f00-49ac-85ee-7e1fa15aa4b8 a11765661f98a7f9a4b588036ce2fe1b {"aliquot_tag": "ALQ_5f5da447", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.RNA-Seq.S3_L001_R1.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R1_001.fastq.gz 4263271081 FASTQ S3_L001_R1 unaligned CPTAC3 ad807ed1-3df7-4eb8-ae63-cbb6c2ecd6e1 2a34dd2ce610e66922a3b64f8cd06dd9 {"aliquot_tag": "ALQ_623d8df7", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03080.RNA-Seq.S3_L001_R2.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R2_001.fastq.gz 4860372361 FASTQ S3_L001_R2 unaligned CPTAC3 3ef0e286-5822-416d-9edc-551b84c60d8a 3c069f6e07d8b5ac3c9b50863a7b2981 {"aliquot_tag": "ALQ_623d8df7", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03080.RNA-Seq.transcriptome.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.transcriptome.gdc_realn.bam 10343962817 BAM transcriptome harmonized CPTAC3 5d9b0c4e-b8c4-43bb-bb0a-d5d54a531927 c7770b6979069eb72c3ef52d5670dff8 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.RNA-Seq.transcriptome.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.transcriptome.gdc_realn.bam 9826052008 BAM transcriptome harmonized CPTAC3 c8505154-d83b-4819-8653-ae433af3c14f 9500929c45c8b5fb9ee2271b323cc6e3 {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor"} -C3N-03080.WGS.N C3N-03080 LUAD WGS blood_normal CPT0209290002 CPT0209290002.WholeGenome.RP-1303.bam 67946220095 BAM aligned CPTAC3 087630ba-8b4a-4d81-a66c-f2a9aa03df96 a483b027248228ed559acb42462bf03d {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03080.WGS.N.hg38 C3N-03080 LUAD WGS blood_normal CPT0209290002 98e20abb-8675-4c58-b729-d4e6c6c0a2ac_wgs_gdc_realn.bam 100146822480 BAM harmonized CPTAC3 50165bf1-3e52-4800-ad78-eb7ba887f5be 330a644ee325778fc7bd8e1c2199cd24 {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03080.WGS.T C3N-03080 LUAD WGS tumor CPT0209240006 CPT0209240006.WholeGenome.RP-1303.bam 98359550521 BAM aligned CPTAC3 0940f0e8-0674-44c6-a506-7123c825591f f83204d41c27c0504adffda181207b91 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor"} -C3N-03080.WGS.T.hg38 C3N-03080 LUAD WGS tumor CPT0209240006 0ed3cb3f-d683-48c2-a08e-a70b66701d24_wgs_gdc_realn.bam 145287676126 BAM harmonized CPTAC3 c241c9d3-e878-4fc2-9724-ce408f9f575b 797c5d1dc53f1b215878ea6659eb3162 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor"} -C3N-03080.WXS.A C3N-03080 LUAD WXS tissue_normal CPT0209250006 CPT0209250006.WholeExome.RP-1303.bam 22581382987 BAM aligned CPTAC3 86cf6bfa-4c63-4858-9017-e500e9705ec7 4c6711655b5558dcf8032def91fd6b52 {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.WXS.A.hg38 C3N-03080 LUAD WXS tissue_normal CPT0209250006 b9ea9ddf-0216-4cbf-aaa6-d104795cbe76_wxs_gdc_realn.bam 31637539357 BAM harmonized CPTAC3 e386a703-8f2f-4b18-aad4-c39cb6a14346 3a6264eee74ce2abc2508c47e4d9c6cd {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03080.WXS.N C3N-03080 LUAD WXS blood_normal CPT0209290002 CPT0209290002.WholeExome.RP-1303.bam 29867779850 BAM aligned CPTAC3 f7501e4e-1b00-4538-9fb5-15a54fcf79a0 ac7337a5e09f25410dc0eefa132da997 {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03080.WXS.N.hg38 C3N-03080 LUAD WXS blood_normal CPT0209290002 98e20abb-8675-4c58-b729-d4e6c6c0a2ac_wxs_gdc_realn.bam 41247198875 BAM harmonized CPTAC3 b8c46d0d-4c69-4089-b722-b4f667974a1d fa7bf396d370ea346ddb766a5bdb0b5d {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal"} -C3N-03080.WXS.T C3N-03080 LUAD WXS tumor CPT0209240006 CPT0209240006.WholeExome.RP-1303.bam 24444558667 BAM aligned CPTAC3 6363942b-b459-4eb5-aa91-c571d3c5be25 ebe83041326c6553a32f1b864ac3abb8 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor"} -C3N-03080.WXS.T.hg38 C3N-03080 LUAD WXS tumor CPT0209240006 0ed3cb3f-d683-48c2-a08e-a70b66701d24_wxs_gdc_realn.bam 33965539340 BAM harmonized CPTAC3 e08187b6-6cdd-4ffd-8e65-606fba6f2e91 57c16da9474caf64118e8957e2b316f6 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor"} -C3N-03086.MethArray.Green.A C3N-03086 PDA Methylation_Array tissue_normal CPT0209320007 203273630261_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f9c38534-20a3-4bf7-ba3e-d5411da57cdf e683870f29dafaf403408c1ddbe76e4a {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03086.MethArray.Green.T C3N-03086 PDA Methylation_Array tumor CPT0209310007 203561620008_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0c552f19-24c4-403f-bffe-2fcc2e95984d af77031275e3ef61dd85697bd2790d03 {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor"} -C3N-03086.MethArray.Red.A C3N-03086 PDA Methylation_Array tissue_normal CPT0209320007 203273630261_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 11a18260-7b79-415a-a9a9-8626809244b2 a0db2190ab446b264d85ee1c87e624e7 {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03086.MethArray.Red.T C3N-03086 PDA Methylation_Array tumor CPT0209310007 203561620008_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 3e1978d4-9207-4f9b-b4c5-c61add6283f6 6a92df36f14434a79d1c3d138a5fae6e {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor"} -C3N-03086.miRNA-Seq.S170_L007_R1.T C3N-03086 PDA miRNA-Seq tumor CPT0209310014 190828_UNC32-K00270_0200_BH7GVJBBXY_CAGGCG_S170_L007_R1_001.unaln.bam 173825437 BAM S170_L007_R1 unaligned CPTAC3 8976eca8-a185-4a17-b96a-fd06a0c4279a 2ac40a28375cebb131a2dd4e767a7f20 {"aliquot_tag": "ALQ_62b9cde", "sample": "S170", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03086.miRNA-Seq.T.hg38 C3N-03086 PDA miRNA-Seq tumor CPT0209310014 dc12593f-588d-48c9-a871-409bfd080502_mirnaseq_gdc_realn.bam 199187558 BAM harmonized CPTAC3 f3d73cc1-ac98-4a4a-8958-4c41feac147c 63aa8f5fd7af0c39938f2a609a6e0567 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor"} -C3N-03086.RNA-Seq.chimeric.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.chimeric.gdc_realn.bam 35433110 BAM chimeric harmonized CPTAC3 b9f7e672-a29d-4984-b44e-a420a52b2b02 b8c0f9ee78693b6f166ce62220d6b942 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor"} -C3N-03086.RNA-Seq.genomic.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.genomic.gdc_realn.bam 7700780094 BAM genomic harmonized CPTAC3 b5dc248e-b83d-43cc-a13d-cfd6a271ad67 94f7fadce5f2b2ef4a6fed6a01e1e3d2 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor"} -C3N-03086.RNA-Seq.S27_L007_R1.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R1_001.fastq.gz 3663477057 FASTQ S27_L007_R1 unaligned CPTAC3 3d918449-c522-4a4e-8846-8d8f61ff618d 40e530a7e89ad6222439c9d293ba2e92 {"aliquot_tag": "ALQ_62b9cde", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03086.RNA-Seq.S27_L007_R2.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R2_001.fastq.gz 4207928137 FASTQ S27_L007_R2 unaligned CPTAC3 761a3cf3-5ad7-4353-877e-19aee8358299 a32a5cc43697408ace84005c9b4bfa59 {"aliquot_tag": "ALQ_62b9cde", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03086.RNA-Seq.transcriptome.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.transcriptome.gdc_realn.bam 10429293572 BAM transcriptome harmonized CPTAC3 2dabb98a-c9b0-4873-ad26-fd03fa1897b5 1b9ff233da8eb5e67541a34b6ea61c78 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor"} -C3N-03086.WGS.N C3N-03086 PDA WGS blood_normal CPT0209360002 CPT0209360002.WholeGenome.RP-1303.bam 57486339521 BAM aligned CPTAC3 b1b50ed4-87ed-4357-a380-0750e05ebb9f c5be797a01593d260a03d67eef8c1007 {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03086.WGS.N.hg38 C3N-03086 PDA WGS blood_normal CPT0209360002 881588b7-980f-441f-af50-97129183b0e4_wgs_gdc_realn.bam 82665510544 BAM harmonized CPTAC3 b9ec89f1-e299-418c-9c70-c2ca6a7e563b 31f2f6291841521690ead7119a0b3b8e {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03086.WGS.T C3N-03086 PDA WGS tumor CPT0209310007 CPT0209310007.WholeGenome.RP-1303.bam 150739891572 BAM aligned CPTAC3 61eda7de-08b8-4638-9b69-5647f51e131e 1b7b95452fa2a165de27fe21ca894394 {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor"} -C3N-03086.WGS.T.hg38 C3N-03086 PDA WGS tumor CPT0209310007 728235ae-47f2-4422-8f47-e4d8fc573f04_wgs_gdc_realn.bam 219107729773 BAM harmonized CPTAC3 4c22fe2d-0dd3-4f6d-a09a-51d83fc9f45c acf6cf020105076e8029a29778cca69d {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor"} -C3N-03086.WXS.A C3N-03086 PDA WXS tissue_normal CPT0209320007 CPT0209320007.WholeExome.RP-1303.bam 31290732763 BAM aligned CPTAC3 f118ff00-1e9b-4cef-a387-3f416edbbe0e d12387c1e3a898280e511eeaed9fd99b {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03086.WXS.A.hg38 C3N-03086 PDA WXS tissue_normal CPT0209320007 6b2664d7-c1ab-40c7-958d-51b09c2e8e5b_wxs_gdc_realn.bam 43298308976 BAM harmonized CPTAC3 26e228a4-13eb-4443-92d3-ebab7efb717c a06dd8ce6006dbc175bc33d29435a834 {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03086.WXS.N C3N-03086 PDA WXS blood_normal CPT0209360002 CPT0209360002.WholeExome.RP-1303.bam 29174127681 BAM aligned CPTAC3 2b98301e-81ed-432e-89b5-5d18db530808 bd5343f76bf3deea063bb7babc760167 {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03086.WXS.N.hg38 C3N-03086 PDA WXS blood_normal CPT0209360002 881588b7-980f-441f-af50-97129183b0e4_wxs_gdc_realn.bam 39452401939 BAM harmonized CPTAC3 3fda5c3d-a966-45cc-8fe0-e7c3564f35fe 55af196ccaf39595d31ae5eb237bf5fb {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03086.WXS.T C3N-03086 PDA WXS tumor CPT0209310007 CPT0209310007.WholeExome.RP-1303.bam 25481078119 BAM aligned CPTAC3 3942a4f7-576e-42b6-8ef7-fd5285586628 6729e847a058685ba548e38b9ca6658c {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor"} -C3N-03086.WXS.T.hg38 C3N-03086 PDA WXS tumor CPT0209310007 728235ae-47f2-4422-8f47-e4d8fc573f04_wxs_gdc_realn.bam 34655470881 BAM harmonized CPTAC3 c1ed21d2-2fc8-4be4-88ac-343f9db0b6ee 321246ee9d5ce2838dcffb60e5f29450 {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor"} -C3N-03088.MethArray.Green.T C3N-03088 GBM Methylation_Array tumor CPT0209440005 203219720211_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 135a44b7-5f82-461e-b11e-8c1c4d4c0f73 4c9e613e7d62d31655a8bcf5483a15b8 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor"} -C3N-03088.MethArray.Red.T C3N-03088 GBM Methylation_Array tumor CPT0209440005 203219720211_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 8131057b-682b-42fd-a81e-5e6f9337ca92 936249f10b2e086f146a58584bcbc383 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor"} -C3N-03088.miRNA-Seq.S35_L008_R1.T C3N-03088 GBM miRNA-Seq tumor CPT0209440008 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L008_R1_001.unaln.bam 215618509 BAM S35_L008_R1 unaligned CPTAC3 449f2617-ed59-40d4-9091-6d3d52f30ebe 6e052aa0be1ce9354e5b7b1e35e91716 {"aliquot_tag": "ALQ_c3635e7c", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03088.miRNA-Seq.T.hg38 C3N-03088 GBM miRNA-Seq tumor CPT0209440008 099a1c9a-18ad-4cd6-aff8-469e21502f3d_mirnaseq_gdc_realn.bam 243581270 BAM harmonized CPTAC3 5cb21c7c-62d1-4051-89e5-43732341df34 954f5d55ff69d7931b2c55ae833d93a8 {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor"} -C3N-03088.RNA-Seq.chimeric.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.chimeric.gdc_realn.bam 48495600 BAM chimeric harmonized CPTAC3 70b17963-8b5f-4c99-a7f7-f26967d8a6e4 8ca6eb04223bd0d2a2f59273036af660 {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor"} -C3N-03088.RNA-Seq.genomic.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.genomic.gdc_realn.bam 9622206522 BAM genomic harmonized CPTAC3 82252a48-4fcc-49d9-a037-ebacd078d343 a1532d6b20f99f17f676e5e710b5431e {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor"} -C3N-03088.RNA-Seq.S9_L004_R1.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R1_001.fastq.gz 4440225897 FASTQ S9_L004_R1 unaligned CPTAC3 6a007bb3-c970-4fc3-80d3-4511ef0c140c c1529f9849adb88ddba70392b6409e77 {"aliquot_tag": "ALQ_c3635e7c", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03088.RNA-Seq.S9_L004_R2.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R2_001.fastq.gz 4652682779 FASTQ S9_L004_R2 unaligned CPTAC3 c28802fe-5b81-45ae-878d-deaab3c7e4b7 d2df709eb8d32501f70a120b34de3267 {"aliquot_tag": "ALQ_c3635e7c", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03088.RNA-Seq.transcriptome.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.transcriptome.gdc_realn.bam 13332652063 BAM transcriptome harmonized CPTAC3 d1081d74-c000-412f-a029-8b999c8b4c5e 3e2ff51f4ef1a89b4308ed333615c469 {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor"} -C3N-03088.WGS.N C3N-03088 GBM WGS blood_normal CPT0209480002 CPT0209480002.WholeGenome.RP-1303.bam 65777731967 BAM aligned CPTAC3 a00e6ef8-f6d9-4b54-b112-e7382e9e44fb f361d35df042ee4e8595cab2f089aca6 {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal"} -C3N-03088.WGS.N.hg38 C3N-03088 GBM WGS blood_normal CPT0209480002 36c1c91c-84e9-4021-819e-ccb9d6f8f637_wgs_gdc_realn.bam 97201246792 BAM harmonized CPTAC3 9238b256-117e-46b9-9f38-b6a08a09cc30 150a5e3a4bef4fcb3dbf7458c84f7a9d {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal"} -C3N-03088.WGS.T C3N-03088 GBM WGS tumor CPT0209440005 CPT0209440005.WholeGenome.RP-1303.bam 57702578123 BAM aligned CPTAC3 669092bb-9223-40b4-8f86-73c885f1528c d172ca21e357a5571bdd3b41c2c57b75 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor"} -C3N-03088.WGS.T.hg38 C3N-03088 GBM WGS tumor CPT0209440005 ecd45ec0-57dd-4b73-a0eb-52a1d54d5c17_wgs_gdc_realn.bam 85717530907 BAM harmonized CPTAC3 e2789d7b-483b-4c2f-a4cf-30313aefc7c4 2e5b852d9885297cb68a7e2da1baaf9c {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor"} -C3N-03088.WXS.N C3N-03088 GBM WXS blood_normal CPT0209480002 CPT0209480002.WholeExome.RP-1303.bam 25084469692 BAM aligned CPTAC3 3ae5b299-448f-43b6-af6a-6650c971e85a f69e41596ee9dfcd923b150f17aeb692 {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal"} -C3N-03088.WXS.N.hg38 C3N-03088 GBM WXS blood_normal CPT0209480002 36c1c91c-84e9-4021-819e-ccb9d6f8f637_wxs_gdc_realn.bam 35419905397 BAM harmonized CPTAC3 9e51b077-3b4a-4bfa-a005-882b95040ecc d74c5bdb311806369d9384ea6397c7e9 {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal"} -C3N-03088.WXS.T C3N-03088 GBM WXS tumor CPT0209440005 CPT0209440005.WholeExome.RP-1303.bam 20499979983 BAM aligned CPTAC3 f81003c5-29e0-4412-bdfa-d0b733b88980 2e3e0ba49e0b8ef41d20b6ef72245193 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor"} -C3N-03088.WXS.T.hg38 C3N-03088 GBM WXS tumor CPT0209440005 ecd45ec0-57dd-4b73-a0eb-52a1d54d5c17_wxs_gdc_realn.bam 28632353256 BAM harmonized CPTAC3 6252264f-0d8e-49d3-8882-680efcf3827a eacd5836145f5773ecbc4e9fb00aab70 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor"} -C3N-03092.MethArray.Green.A C3N-03092 LSCC Methylation_Array tissue_normal CPT0197520006 203220070217_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 fd1799c9-a1c1-4dec-b4b5-8a88a9f2bd84 d463db59b24e5be8b1d5509073cf0075 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.MethArray.Green.T C3N-03092 LSCC Methylation_Array tumor CPT0197480006 203220070100_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 320f0100-e11a-4737-b89b-1352821bb40d dd41f861ff0dfc9f27f420301255aed2 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor"} -C3N-03092.MethArray.Red.A C3N-03092 LSCC Methylation_Array tissue_normal CPT0197520006 203220070217_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6ba6c9e2-141d-43b1-af35-f70539752aac 7aab92887800e6395c6e974cf3387453 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.MethArray.Red.T C3N-03092 LSCC Methylation_Array tumor CPT0197480006 203220070100_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 3457f755-80b3-4ec8-a31c-c069b8141f97 1c41a020f773858c97fbf6378dd39a15 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor"} -C3N-03092.miRNA-Seq.A.hg38 C3N-03092 LSCC miRNA-Seq tissue_normal CPT0197520009 40c7784d-bef7-47b6-a417-74e29122e927_mirnaseq_gdc_realn.bam 213339255 BAM harmonized CPTAC3 fa22c015-1cf4-487f-b7d1-3b935c23aeaf 7a7f0d6e123ccaa0dc3badd6c56dd709 {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.miRNA-Seq.S15_L001_R1.T C3N-03092 LSCC miRNA-Seq tumor CPT0197480009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCAACA_S15_L001_R1_001.unaln.bam 179669627 BAM S15_L001_R1 unaligned CPTAC3 901f821f-60bc-4be1-8483-17fdf22db9da 1674437661dc5942afc7e2ad4f12afd4 {"aliquot_tag": "ALQ_769df58", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03092.miRNA-Seq.S17_L003_R1.A C3N-03092 LSCC miRNA-Seq tissue_normal CPT0197520009 190206_UNC31-K00269_0191_AH2WY5BBXY_CATGGC_S17_L003_R1_001.unaln.bam 192584289 BAM S17_L003_R1 unaligned CPTAC3 81440cff-c810-47c0-839b-82c849ee94e2 e45d1045449cb75114481deda8ac82e7 {"aliquot_tag": "ALQ_8685145c", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.miRNA-Seq.T.hg38 C3N-03092 LSCC miRNA-Seq tumor CPT0197480009 94f4b8a4-e3e0-402c-8c77-ea0d95857a0f_mirnaseq_gdc_realn.bam 199707174 BAM harmonized CPTAC3 f24c26a1-4edc-454f-bbe9-466e27506c43 85848f08757782815e10a934aeb75706 {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor"} -C3N-03092.RNA-Seq.chimeric.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.chimeric.gdc_realn.bam 63731568 BAM chimeric harmonized CPTAC3 af7a0459-90b7-415b-bce1-fc95802390d1 d5689265053b6a8a322a7de34e42fd7f {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.RNA-Seq.chimeric.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.chimeric.gdc_realn.bam 70117071 BAM chimeric harmonized CPTAC3 6889e0a8-57db-4b7d-ad0d-87bbf1a2074f 6e0337e6ae70439820400b60df44073d {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor"} -C3N-03092.RNA-Seq.genomic.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.genomic.gdc_realn.bam 8094632776 BAM genomic harmonized CPTAC3 ce068033-7936-4751-84d5-7949117385cf d5ada8a44115ce1a8aac72481455ac79 {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.RNA-Seq.genomic.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.genomic.gdc_realn.bam 8925108618 BAM genomic harmonized CPTAC3 8c13a432-d758-4249-b3e9-360b70863b87 3809a702bdbb9827bbd3bf0dd13a6586 {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor"} -C3N-03092.RNA-Seq.S11_L003_R1.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3744159218 FASTQ S11_L003_R1 unaligned CPTAC3 0433577e-e787-4c63-adc1-2ef179880630 facc1344800f3a5c49287788a405b42e {"aliquot_tag": "ALQ_8685145c", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.RNA-Seq.S11_L003_R2.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4132832278 FASTQ S11_L003_R2 unaligned CPTAC3 a1708f79-7f69-4f43-a21c-c33ae1360110 b05bff5b5aec7d0f4b563aed9b5623ad {"aliquot_tag": "ALQ_8685145c", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.RNA-Seq.S3_L001_R1.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3774654674 FASTQ S3_L001_R1 unaligned CPTAC3 d5399bad-144d-41e8-85bb-d6fffb1c0576 a706ccf2b917729a33e578cf59d5d3c0 {"aliquot_tag": "ALQ_769df58", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03092.RNA-Seq.S3_L001_R2.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4180670027 FASTQ S3_L001_R2 unaligned CPTAC3 69c838f2-50ed-4ef2-8916-36e907fa0c7d d1c9e61acd4203042e2a37eee22bbc67 {"aliquot_tag": "ALQ_769df58", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03092.RNA-Seq.transcriptome.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.transcriptome.gdc_realn.bam 9095532531 BAM transcriptome harmonized CPTAC3 e8a6523b-8e05-42ce-b13e-48b75a7d2418 0250f57d0d98f0a09faa94cc90188ddb {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.RNA-Seq.transcriptome.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.transcriptome.gdc_realn.bam 10706445565 BAM transcriptome harmonized CPTAC3 840d8afc-1b9d-4a19-b01f-bf0b8df37d9b 86c9790efd14eb89db6a065def442085 {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor"} -C3N-03092.WGS.N C3N-03092 LSCC WGS blood_normal CPT0197660002 CPT0197660002.WholeGenome.RP-1303.bam 50233346465 BAM aligned CPTAC3 9fe71701-59bd-4f07-9841-db4779f54690 08f8f41a08f8996b0eb5459a2125942b {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03092.WGS.N.hg38 C3N-03092 LSCC WGS blood_normal CPT0197660002 7d908a13-1a96-4c8a-a8ee-2574360aeaff_wgs_gdc_realn.bam 73753015124 BAM harmonized CPTAC3 414ce4ab-48ea-4cbf-b375-31b33e82e22c a9bbf8d0e47c46f0a36d4772d0c63bb5 {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03092.WGS.T C3N-03092 LSCC WGS tumor CPT0197480006 CPT0197480006.WholeGenome.RP-1303.bam 138187368150 BAM aligned CPTAC3 67916b2f-e883-4a7a-98c1-6e7d3954bf13 8211ea989dfdeb60c45b42adde2289a1 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor"} -C3N-03092.WGS.T.hg38 C3N-03092 LSCC WGS tumor CPT0197480006 47d67c08-4bdf-4fed-a0fb-fae09f213c99_wgs_gdc_realn.bam 200603476272 BAM harmonized CPTAC3 d79c9751-c8a7-41b2-aa80-3bdf991522d2 93399f5ac7e1b619e3ddc3b1e69167d2 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor"} -C3N-03092.WXS.A C3N-03092 LSCC WXS tissue_normal CPT0197520006 CPT0197520006.WholeExome.RP-1303.bam 25152711034 BAM aligned CPTAC3 d53351e5-2269-4ef4-9cd6-dd2ffabf6124 a3ca2db55665c46af4387ec19b3a0f31 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.WXS.A.hg38 C3N-03092 LSCC WXS tissue_normal CPT0197520006 ed460ca6-c5e8-407e-ae40-0857075f21f3_wxs_gdc_realn.bam 34798922667 BAM harmonized CPTAC3 17b1bbe8-915a-4d07-bbb6-9f11d11368b1 d2e676359c68b2c9a4570c12e3e0fd23 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03092.WXS.N C3N-03092 LSCC WXS blood_normal CPT0197660002 CPT0197660002.WholeExome.RP-1303.bam 24669761785 BAM aligned CPTAC3 7d90cbbb-0ab1-4a79-925e-1012dc82fb5f a5c32677a3253fadd1e7b094cd8cad40 {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03092.WXS.N.hg38 C3N-03092 LSCC WXS blood_normal CPT0197660002 7d908a13-1a96-4c8a-a8ee-2574360aeaff_wxs_gdc_realn.bam 33420898432 BAM harmonized CPTAC3 2fa619d1-516a-49aa-a28e-77b4610cc6a3 84d8762c9a690e140947829474966d71 {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03092.WXS.T C3N-03092 LSCC WXS tumor CPT0197480006 CPT0197480006.WholeExome.RP-1303.bam 22145913445 BAM aligned CPTAC3 7479f448-1d1c-465f-86e7-789afa0cf05a 89ab5f6ec1b1191366fe4f5e011e8257 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor"} -C3N-03092.WXS.T.hg38 C3N-03092 LSCC WXS tumor CPT0197480006 47d67c08-4bdf-4fed-a0fb-fae09f213c99_wxs_gdc_realn.bam 30453213996 BAM harmonized CPTAC3 cd621009-63dc-44af-8673-9199c3e5920f 54c6faf1bc0662881345867ee78cec21 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor"} -C3N-03093.MethArray.Green.A C3N-03093 LSCC Methylation_Array tissue_normal CPT0197860006 203219650136_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 5a0342c1-514c-46ef-ba2e-3fc1b84ece18 0a27d459474be152b775621d454db740 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.MethArray.Green.T C3N-03093 LSCC Methylation_Array tumor CPT0197740006 203219750071_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1689f27e-d10c-4d41-b4f6-6e3f92090376 d271ac19bcb7395f2802f88279b6c622 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor"} -C3N-03093.MethArray.Red.A C3N-03093 LSCC Methylation_Array tissue_normal CPT0197860006 203219650136_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 e9e8b995-395f-4f49-9f91-3dfd8cd46c93 d5f14275646f9e970ff7ffae4efe8d60 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.MethArray.Red.T C3N-03093 LSCC Methylation_Array tumor CPT0197740006 203219750071_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 484af8d0-9882-4631-83c4-f9a23450163a d67f40700ca474d846e45e2ce27aaafd {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor"} -C3N-03093.miRNA-Seq.A.hg38 C3N-03093 LSCC miRNA-Seq tissue_normal CPT0197860009 a1e480f8-73ec-4409-9a70-4eead8c42ddc_mirnaseq_gdc_realn.bam 332618767 BAM harmonized CPTAC3 ca9914ce-0443-45c1-bba4-8a84e45c225e 69d7679c503434f53e77d5f02789fa74 {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.miRNA-Seq.S14_L001_R1.T C3N-03093 LSCC miRNA-Seq tumor CPT0197740009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGGAAT_S14_L001_R1_001.unaln.bam 208898987 BAM S14_L001_R1 unaligned CPTAC3 e8539eab-2156-4e10-9c8c-74a4e7d5a8c3 06d9f8569212fdf32705e2d098f1de8c {"aliquot_tag": "ALQ_440d40f7", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03093.miRNA-Seq.S29_L002_R1.A C3N-03093 LSCC miRNA-Seq tissue_normal CPT0197860009 190813_UNC32-K00270_0196_AH5MCWBBXY_TCCCGA_S29_L002_R1_001.unaln.bam 292853139 BAM S29_L002_R1 unaligned CPTAC3 5b07513a-dba0-45c9-b123-09b30f6f0606 02710f1cb08a2e0d997c219ab3296c21 {"aliquot_tag": "ALQ_cf9ba142", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.miRNA-Seq.T.hg38 C3N-03093 LSCC miRNA-Seq tumor CPT0197740009 d3c94de2-dbbe-46f2-aacf-d848be1593ad_mirnaseq_gdc_realn.bam 226913614 BAM harmonized CPTAC3 71116b93-46bd-4249-84ca-941f90994626 e055492594a45604d302714713988c93 {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor"} -C3N-03093.RNA-Seq.chimeric.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.chimeric.gdc_realn.bam 78901141 BAM chimeric harmonized CPTAC3 30db42c8-4131-47cd-bd29-59a28ac67354 04e42136ea45e66852a47061e21dfca4 {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.RNA-Seq.chimeric.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.chimeric.gdc_realn.bam 92014497 BAM chimeric harmonized CPTAC3 b8324c4d-7865-49dc-9a76-e8e5740cff5d 5059f0f7f23831062c95e5b708154dbc {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor"} -C3N-03093.RNA-Seq.genomic.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.genomic.gdc_realn.bam 8252152052 BAM genomic harmonized CPTAC3 e68e4b72-f6c3-4073-94cd-d7a190f5c9da 2b264f48de500374609400f2b6f40a2a {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.RNA-Seq.genomic.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.genomic.gdc_realn.bam 8690914086 BAM genomic harmonized CPTAC3 bf45da6d-1596-4dd3-a337-4305dcc05e6e cd083bf06cdff53ccd0e5319eaf8a19a {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor"} -C3N-03093.RNA-Seq.S10_L003_R1.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3623811658 FASTQ S10_L003_R1 unaligned CPTAC3 4bd91bf6-09b1-46a9-b033-f3b3656523e1 607d454dfd724801cc890711d3659300 {"aliquot_tag": "ALQ_cf9ba142", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.RNA-Seq.S10_L003_R2.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4199432680 FASTQ S10_L003_R2 unaligned CPTAC3 5f53ce1f-acdf-4108-b789-819849706795 e6f220fd50135b995d9fc10561616dda {"aliquot_tag": "ALQ_cf9ba142", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.RNA-Seq.S2_L001_R1.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3533510834 FASTQ S2_L001_R1 unaligned CPTAC3 bc716734-dbf0-4fa5-9a37-c104857a9766 4355436716648b087235bd1a66925ba1 {"aliquot_tag": "ALQ_440d40f7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03093.RNA-Seq.S2_L001_R2.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3865247948 FASTQ S2_L001_R2 unaligned CPTAC3 9916c1f0-9378-4125-bb73-5cd18096344e cbd69e06b1d447f486407dc8d44d4f2e {"aliquot_tag": "ALQ_440d40f7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03093.RNA-Seq.transcriptome.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.transcriptome.gdc_realn.bam 8702290298 BAM transcriptome harmonized CPTAC3 85805904-9937-49ed-924f-bf31c0f3403f 6572a4404f848aa5d08008cd2a09d50e {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.RNA-Seq.transcriptome.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.transcriptome.gdc_realn.bam 9061350565 BAM transcriptome harmonized CPTAC3 0794f029-9280-47a1-be14-315e9730d2e6 92e83b60837af5ab3b37b164a31ca635 {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor"} -C3N-03093.WGS.N C3N-03093 LSCC WGS blood_normal CPT0198000002 CPT0198000002.WholeGenome.RP-1303.bam 109740346429 BAM aligned CPTAC3 f1d0e8a9-55a2-4be0-b5f0-af2364106ba7 b57b3dc8632d12b7a65f3e9707ccf5e1 {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03093.WGS.N.hg38 C3N-03093 LSCC WGS blood_normal CPT0198000002 b52dfbb4-71a1-40b5-8f03-56122d428afd_wgs_gdc_realn.bam 158944152577 BAM harmonized CPTAC3 61a735df-47bf-471d-8893-f0bbcfd04763 661e0688d429c0ec33c8acf3a0c7e86a {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03093.WGS.T C3N-03093 LSCC WGS tumor CPT0197740006 CPT0197740006.WholeGenome.RP-1303.bam 57131983513 BAM aligned CPTAC3 9ba0cf6c-b3da-4cdb-b8b2-e1eff3b0a3d9 a83475e774b9f13da46e5586fcbe0e69 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor"} -C3N-03093.WGS.T.hg38 C3N-03093 LSCC WGS tumor CPT0197740006 ad027991-1119-4114-bd08-47af71ae25e5_wgs_gdc_realn.bam 83966814691 BAM harmonized CPTAC3 ae09d5fa-f718-4aa7-8279-237a7ef4f86f f0c928425895180bd7cf84a4551b8ed0 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor"} -C3N-03093.WXS.A C3N-03093 LSCC WXS tissue_normal CPT0197860006 CPT0197860006.WholeExome.RP-1303.bam 20323722566 BAM aligned CPTAC3 69590603-f7be-4d40-b241-f7695070d54b 585b75c71def28a03e6ec4f910c8ffe0 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.WXS.A.hg38 C3N-03093 LSCC WXS tissue_normal CPT0197860006 d91e9b59-cd2f-4fab-9346-1b8668cbb8a8_wxs_gdc_realn.bam 27451998927 BAM harmonized CPTAC3 a871897a-f96f-49c4-b110-84043c87e9bd 46bb97d6ac513ed55d05bc554f3908d9 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03093.WXS.N C3N-03093 LSCC WXS blood_normal CPT0198000002 CPT0198000002.WholeExome.RP-1303.bam 17084220995 BAM aligned CPTAC3 b1f99967-48a3-46af-bd49-80006362703c bbb5343b129a1426e73373cf0d168ad7 {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03093.WXS.N.hg38 C3N-03093 LSCC WXS blood_normal CPT0198000002 b52dfbb4-71a1-40b5-8f03-56122d428afd_wxs_gdc_realn.bam 24048216533 BAM harmonized CPTAC3 5d1685ea-6990-4b65-8a0a-f612b53dd03e 65a6759081880d6fa53ab1cf9ce3acab {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03093.WXS.T C3N-03093 LSCC WXS tumor CPT0197740006 CPT0197740006.WholeExome.RP-1303.bam 23000567980 BAM aligned CPTAC3 bc711fbc-735b-4755-8c0b-a34595670c6f 3b0828382716ab90952be0763b92892b {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor"} -C3N-03093.WXS.T.hg38 C3N-03093 LSCC WXS tumor CPT0197740006 ad027991-1119-4114-bd08-47af71ae25e5_wxs_gdc_realn.bam 31249136420 BAM harmonized CPTAC3 6655cf18-88ae-46c7-94bc-2124ee4ce094 36c5e0fcc95ab5758c67284cf10d8285 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor"} -C3N-03173.MethArray.Green.A C3N-03173 PDA Methylation_Array tissue_normal CPT0186050007 203561450102_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 35510f79-e226-409c-9b6c-fca0acdfc77b dd0429819d8954139f706fab3fe40564 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.MethArray.Green.T C3N-03173 PDA Methylation_Array tumor CPT0186040013 203561450014_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 26107843-0e59-4a39-a10d-a2b48c6368a1 0d5d47e9afe2950b7ec6cd0487a1200d {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor"} -C3N-03173.MethArray.Red.A C3N-03173 PDA Methylation_Array tissue_normal CPT0186050007 203561450102_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 bca9c0cf-d5fc-411c-bdea-058785578fc5 8d8706e304e92d21df9249d8ddbc31b2 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.MethArray.Red.T C3N-03173 PDA Methylation_Array tumor CPT0186040013 203561450014_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 ed71f21f-6ff5-46ee-a937-123782813bb0 6f6c56e9174320a8ad1def3534991d13 {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor"} -C3N-03173.miRNA-Seq.A.hg38 C3N-03173 PDA miRNA-Seq tissue_normal CPT0186050010 554dc1b3-932d-401b-81ae-a41ff31480ad_mirnaseq_gdc_realn.bam 539609848 BAM harmonized CPTAC3 47c614f2-1003-4704-a6af-a2a0bc07e949 0406933be9824bed6fff94452c635cec {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.miRNA-Seq.S12_L003_R1.T C3N-03173 PDA miRNA-Seq tumor CPT0186040010 190813_UNC32-K00270_0196_AH5MCWBBXY_ATTCCT_S12_L003_R1_001.unaln.bam 214237806 BAM S12_L003_R1 unaligned CPTAC3 25d7020e-cab3-41b2-9804-f49b028615f8 fa86a487bca56f5af8f4dbdf023170b6 {"aliquot_tag": "ALQ_5312f280", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03173.miRNA-Seq.S22_L003_R1.A C3N-03173 PDA miRNA-Seq tissue_normal CPT0186050010 190813_UNC32-K00270_0196_AH5MCWBBXY_CGGAAT_S22_L003_R1_001.unaln.bam 477648630 BAM S22_L003_R1 unaligned CPTAC3 5fc6c39e-50cc-445a-bcb4-3185d870da46 de8fc8e6fcb1b6b5730cf4b13368aa49 {"aliquot_tag": "ALQ_6e72db30", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.miRNA-Seq.T.hg38 C3N-03173 PDA miRNA-Seq tumor CPT0186040010 68f10894-282e-4a7f-b33d-a090c9441f08_mirnaseq_gdc_realn.bam 244402869 BAM harmonized CPTAC3 4962433c-8282-418d-a7b7-9b8030e67397 c5deec91e61b1824eb51f3ce7a879b61 {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor"} -C3N-03173.RNA-Seq.chimeric.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.chimeric.gdc_realn.bam 34844426 BAM chimeric harmonized CPTAC3 28e93704-ad30-438c-9e49-4aaf86b5544b 51e6c51ca8dad5779bd0a7e9f6a307ff {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.RNA-Seq.chimeric.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.chimeric.gdc_realn.bam 42694648 BAM chimeric harmonized CPTAC3 3d8efe19-4e8f-4282-b577-e417bab1fbd9 0acd000d86999ab4325979e390f7ecdf {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor"} -C3N-03173.RNA-Seq.genomic.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.genomic.gdc_realn.bam 7141937358 BAM genomic harmonized CPTAC3 29aa6471-1d8e-4a84-9d80-9a774761d1a9 b83958275cec54a447f640cafdf976a7 {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.RNA-Seq.genomic.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.genomic.gdc_realn.bam 9054039193 BAM genomic harmonized CPTAC3 4cd36f6a-3e56-4712-97b3-32356d25ef8d 2e8fb7a63929f531c3a5558543d9cdc3 {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor"} -C3N-03173.RNA-Seq.S21_L006_R1.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R1_001.fastq.gz 3156533483 FASTQ S21_L006_R1 unaligned CPTAC3 3cc111fa-a35b-4d22-9537-d26f91788b33 edae608f77cacdd7747e2b18e6d2c7c7 {"aliquot_tag": "ALQ_6e72db30", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.RNA-Seq.S21_L006_R2.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R2_001.fastq.gz 3695447076 FASTQ S21_L006_R2 unaligned CPTAC3 214d357b-8e8e-4fa9-ac51-e0543c1b85cb e23af47a11772f763065fe73cf7abf4c {"aliquot_tag": "ALQ_6e72db30", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.RNA-Seq.S24_L007_R1.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R1_001.fastq.gz 4243130759 FASTQ S24_L007_R1 unaligned CPTAC3 9b57c2ff-046e-4890-b297-78b781681c4c 0d60a65ba39fabbaaada54ebeb3f8ba5 {"aliquot_tag": "ALQ_5312f280", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03173.RNA-Seq.S24_L007_R2.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R2_001.fastq.gz 4810406574 FASTQ S24_L007_R2 unaligned CPTAC3 5c17c0fe-363f-4d67-b655-e6113c9e375d c7b4682a9b3fb2a946d33a4b2f69c9a6 {"aliquot_tag": "ALQ_5312f280", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03173.RNA-Seq.transcriptome.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.transcriptome.gdc_realn.bam 7648761470 BAM transcriptome harmonized CPTAC3 6662ebd3-6290-4136-94b4-53a6fafb4f21 e5c95cb95b1ec1621555e54dfd21a06e {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.RNA-Seq.transcriptome.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.transcriptome.gdc_realn.bam 10998079787 BAM transcriptome harmonized CPTAC3 2c4d4b8e-7bf8-4acc-b216-6f79d5e48d60 78478613fc3a39d404e0c4549776ef29 {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor"} -C3N-03173.WGS.N C3N-03173 PDA WGS blood_normal CPT0187290002 CPT0187290002.WholeGenome.RP-1303.bam 69827861271 BAM aligned CPTAC3 f915aeee-76fe-497d-b1cb-fe1ef56d99d0 f4fe4cf8dc77140f49ba8f174eacb245 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03173.WGS.N.hg38 C3N-03173 PDA WGS blood_normal CPT0187290002 6e8cc228-a3ef-4e63-95c5-1aaa5976f987_wgs_gdc_realn.bam 100768403814 BAM harmonized CPTAC3 1591620d-a9f6-4ee5-aa22-83e69bb03fe6 c652866906e2560b6fa2f205b373c103 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03173.WGS.T C3N-03173 PDA WGS tumor CPT0186040013 CPT0186040013.WholeGenome.RP-1303.PDO-18613.bam 120902172333 BAM aligned CPTAC3 f24c4f76-9406-4426-a230-e37dcc15c39e 5f6c57c73185e64aad5423da7d045b68 {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor"} -C3N-03173.WGS.T.hg38 C3N-03173 PDA WGS tumor CPT0186040013 73bca6e6-5f02-4756-af7d-6b5eed76c999_wgs_gdc_realn.bam 176920888955 BAM harmonized CPTAC3 6e174093-43bc-48b2-a0a2-abdbc554b8c8 e4a9fa74f2cb156a376150aa0501fd9f {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor"} -C3N-03173.WXS.A C3N-03173 PDA WXS tissue_normal CPT0186050007 CPT0186050007.WholeExome.RP-1303.bam 21392447175 BAM aligned CPTAC3 5001b90d-b572-4de7-b882-d896b9a8a261 fd9ea7e2fed1a862d46a80f9a7bdf5c3 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.WXS.A.hg38 C3N-03173 PDA WXS tissue_normal CPT0186050007 638c8cbe-c0c5-45fa-854d-eff395a728c0_wxs_gdc_realn.bam 29542907021 BAM harmonized CPTAC3 39c28a05-d5fe-455a-944e-213520d71b58 cd9918d0522dfb5be5f31dc149ee0c86 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03173.WXS.N C3N-03173 PDA WXS blood_normal CPT0187290002 CPT0187290002.WholeExome.RP-1303.bam 26592741320 BAM aligned CPTAC3 516ed3eb-79ca-4b75-89b9-581825fdd3d2 b832566d3274ef017f107c9284fe8f48 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03173.WXS.N.hg38 C3N-03173 PDA WXS blood_normal CPT0187290002 6e8cc228-a3ef-4e63-95c5-1aaa5976f987_wxs_gdc_realn.bam 36344614847 BAM harmonized CPTAC3 e860bcb0-7721-4daa-aa48-a70e664f6ebf 3ab581176e6d43fa794709fb14a4c9b8 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03173.WXS.T C3N-03173 PDA WXS tumor CPT0186040013 CPT0186040013.WholeExome.RP-1303.bam 24220463410 BAM aligned CPTAC3 a9d660c5-8e36-42e2-95c8-ab8fe231d60a 82e1d3eae92a25ed08089f00238aa81a {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor"} -C3N-03173.WXS.T.hg38 C3N-03173 PDA WXS tumor CPT0186040013 73bca6e6-5f02-4756-af7d-6b5eed76c999_wxs_gdc_realn.bam 33126947600 BAM harmonized CPTAC3 88c32582-6882-48cd-a14c-04cf54a84c63 b1d3df92f859f59595d489a0012f1ae5 {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor"} -C3N-03180.miRNA-Seq.S26_L004_R1.T C3N-03180 GBM miRNA-Seq tumor CPT0206450006 181219_UNC31-K00269_0173_BHYGJJBBXX_ATTCCT_S26_L004_R1_001.unaln.bam 223446234 BAM S26_L004_R1 unaligned CPTAC3 183a90a4-4aba-4093-9b8c-6d86a2531b8c b0984982dae06887de29e7ad4d5cf96b {"aliquot_tag": "ALQ_eff32a22", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03180.miRNA-Seq.T.hg38 C3N-03180 GBM miRNA-Seq tumor CPT0206450006 0ab9fc8a-85de-4243-aa5b-818673c699b2_mirnaseq_gdc_realn.bam 246204106 BAM harmonized CPTAC3 a9069373-e397-4664-ac66-483b6fddcd57 6e9684f4f5255680363d731299bb5947 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor"} -C3N-03180.RNA-Seq.chimeric.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.chimeric.gdc_realn.bam 179304429 BAM chimeric harmonized CPTAC3 30ca3c79-f0b2-4356-a5a8-1a595f320174 7a1a747a6d637b26063b5590d48fca70 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor"} -C3N-03180.RNA-Seq.genomic.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.genomic.gdc_realn.bam 7595872394 BAM genomic harmonized CPTAC3 d4c46bf2-296f-4d4a-9a8d-6ecb164c3cb6 34d179fad3c40acaeca4b931f8b99649 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor"} -C3N-03180.RNA-Seq.S3_L008_R1.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R1_001.fastq.gz 3432824481 FASTQ S3_L008_R1 unaligned CPTAC3 94910b4a-6541-4491-af24-64b4b5209f4e 09a5e42306ffc12f21d903b8ee5b9bda {"aliquot_tag": "ALQ_eff32a22", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03180.RNA-Seq.S3_L008_R2.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R2_001.fastq.gz 3531880668 FASTQ S3_L008_R2 unaligned CPTAC3 3935ae0d-87c0-4ed0-88bd-fc1e45733f11 b557382ffe9c7004f42e17d543db8154 {"aliquot_tag": "ALQ_eff32a22", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03180.RNA-Seq.transcriptome.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.transcriptome.gdc_realn.bam 10231904319 BAM transcriptome harmonized CPTAC3 f49d2e00-e6e0-456b-b0c1-60ad4abd5894 65d515c19a803de79c34cb9c8a51ff72 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor"} -C3N-03180.WGS.N C3N-03180 GBM WGS blood_normal CPT0206500002 CPT0206500002.WholeGenome.RP-1303.bam 56557163572 BAM aligned CPTAC3 2a46c639-a598-441f-a78c-1b8b7226f35a f7c601cc05c05e36e029665f90d6df70 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03180.WGS.N.hg38 C3N-03180 GBM WGS blood_normal CPT0206500002 edf472d8-84a9-455a-86a1-2b6c5c087389_wgs_gdc_realn.bam 83598139567 BAM harmonized CPTAC3 dd46c594-18fb-4f74-8dc4-89ed1ebede3e 7e9d17ef52d45ddc17ecabf63f496ba7 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03180.WGS.T C3N-03180 GBM WGS tumor CPT0206450009 CPT0206450009.WholeGenome.RP-1303.bam 80423535177 BAM aligned CPTAC3 2e979c93-6f7e-4148-8810-515a19caf12b d98e7629ae07404a9e8205c9ce4e9477 {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor"} -C3N-03180.WGS.T.hg38 C3N-03180 GBM WGS tumor CPT0206450009 5bee80df-adff-4e5a-bff0-dabf96ae046e_wgs_gdc_realn.bam 121502710116 BAM harmonized CPTAC3 c8fca0a4-a2da-4fea-9088-cea27065329e e07e789c082fe8c038b6f0261d87b952 {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor"} -C3N-03180.WXS.N C3N-03180 GBM WXS blood_normal CPT0206500002 CPT0206500002.WholeExome.RP-1303.bam 24836504611 BAM aligned CPTAC3 5d487cf8-5fc2-40f6-9607-8fe141bb6b8e d33cf69f858fda6392f7f0709764dc33 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03180.WXS.N.hg38 C3N-03180 GBM WXS blood_normal CPT0206500002 edf472d8-84a9-455a-86a1-2b6c5c087389_wxs_gdc_realn.bam 34730472441 BAM harmonized CPTAC3 4d331593-e55a-4ade-b2f3-56330fb2bcf5 e3c3a59e5e253962f1e29464daf08cb6 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal"} -C3N-03180.WXS.T C3N-03180 GBM WXS tumor CPT0206450009 CPT0206450009.WholeExome.RP-1303.bam 23652758191 BAM aligned CPTAC3 6fd52954-bc14-4652-b33e-2568ea5493e7 205762d2a61cae0b151d136b23d682ed {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor"} -C3N-03180.WXS.T.hg38 C3N-03180 GBM WXS tumor CPT0206450009 5bee80df-adff-4e5a-bff0-dabf96ae046e_wxs_gdc_realn.bam 32422430650 BAM harmonized CPTAC3 d9068c8d-278e-4587-832d-5bdd01a0c495 e57fdcbf45587f68f2f4b0a4d73aa7fc {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor"} -C3N-03182.MethArray.Green.T C3N-03182 GBM Methylation_Array tumor CPT0206560009 203219650047_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 91573271-bea7-463d-94be-a149503cdab0 97052dbe9d2de0e9885c6d329180cf4b {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor"} -C3N-03182.MethArray.Red.T C3N-03182 GBM Methylation_Array tumor CPT0206560009 203219650047_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 caa8a7c4-c750-4a9e-a886-891e4ddf4abf f47749faef72c5bf6505d066dedf708c {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor"} -C3N-03182.miRNA-Seq.S27_L004_R1.T C3N-03182 GBM miRNA-Seq tumor CPT0206560006 181219_UNC31-K00269_0173_BHYGJJBBXX_CAAAAG_S27_L004_R1_001.unaln.bam 175667733 BAM S27_L004_R1 unaligned CPTAC3 b0dd487d-f40c-4af4-aa81-72f5c711b72f 6627f236d5d8354c0c11efec15ec251f {"aliquot_tag": "ALQ_630f8357", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03182.miRNA-Seq.T.hg38 C3N-03182 GBM miRNA-Seq tumor CPT0206560006 dfe44706-7cfd-4717-b360-6264b2dd71e9_mirnaseq_gdc_realn.bam 196370648 BAM harmonized CPTAC3 c913ec73-04a4-4dc9-81d3-b63e67250dfc e891bcee4c8a09f976797ca6da829934 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor"} -C3N-03182.RNA-Seq.chimeric.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.chimeric.gdc_realn.bam 125819892 BAM chimeric harmonized CPTAC3 9962c0bf-62b6-4926-a733-c2e790acfc74 5a69760e998e5b17fde74aaac1ad4a71 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor"} -C3N-03182.RNA-Seq.genomic.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.genomic.gdc_realn.bam 7988922287 BAM genomic harmonized CPTAC3 5860fc27-8c81-40a4-a8e6-a49ae231b762 d182fe2c241a973eaaa5d5c9b8e68ab0 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor"} -C3N-03182.RNA-Seq.S4_L008_R1.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R1_001.fastq.gz 3741947645 FASTQ S4_L008_R1 unaligned CPTAC3 16b89fae-b4cd-46f4-b073-7f97adf79742 54a76510ea4833768a07e1c6127416d1 {"aliquot_tag": "ALQ_630f8357", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03182.RNA-Seq.S4_L008_R2.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R2_001.fastq.gz 3772103440 FASTQ S4_L008_R2 unaligned CPTAC3 aa16efac-5164-4f11-986e-76fbdd660b5e 6dc99ddbb8aa68306fd55ee5ff7b5c1b {"aliquot_tag": "ALQ_630f8357", "sample": "S4", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03182.RNA-Seq.transcriptome.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.transcriptome.gdc_realn.bam 10636329658 BAM transcriptome harmonized CPTAC3 418666ec-9248-43f7-a804-a290e2a0a6c7 824c5ca7a008f7b73471a7452c989da1 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor"} -C3N-03182.WGS.N C3N-03182 GBM WGS blood_normal CPT0206610002 CPT0206610002.WholeGenome.RP-1303.bam 61463466398 BAM aligned CPTAC3 40083d23-e053-4774-a150-cd1bac2e5983 289c2bce3b83f52f8770cfa206022c17 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03182.WGS.N.hg38 C3N-03182 GBM WGS blood_normal CPT0206610002 169a9157-ea3d-4d12-896d-093c39862823_wgs_gdc_realn.bam 91728345679 BAM harmonized CPTAC3 2ad31616-457b-466a-8225-106e6be6b948 52e6a93631360987edd87e0f125a7924 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03182.WGS.T C3N-03182 GBM WGS tumor CPT0206560009 CPT0206560009.WholeGenome.RP-1303.bam 67489696700 BAM aligned CPTAC3 5e017c82-5727-4ba4-ab60-b419f70de4fc 6e4c76fd49692d6d5f3ff5ed4cbc3366 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor"} -C3N-03182.WGS.T.hg38 C3N-03182 GBM WGS tumor CPT0206560009 dc765b05-ce52-46f4-a45c-200e98c13c17_wgs_gdc_realn.bam 102534668964 BAM harmonized CPTAC3 e0545fba-af1d-47e9-8c38-8fbf516625c0 aa485877f805db54131582f4c43df244 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor"} -C3N-03182.WXS.N C3N-03182 GBM WXS blood_normal CPT0206610002 CPT0206610002.WholeExome.RP-1303.bam 27044051742 BAM aligned CPTAC3 e870346a-01da-4af0-ae28-25cf17862c03 c7d5f366f12214f8e57da29f512895f3 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03182.WXS.N.hg38 C3N-03182 GBM WXS blood_normal CPT0206610002 169a9157-ea3d-4d12-896d-093c39862823_wxs_gdc_realn.bam 38197405326 BAM harmonized CPTAC3 89d3952d-5adf-46e0-80dc-75d403d68222 20ec08d1c5de0797fd4d474c757ee541 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03182.WXS.T C3N-03182 GBM WXS tumor CPT0206560009 CPT0206560009.WholeExome.RP-1303.bam 30467398549 BAM aligned CPTAC3 d1d2e75a-b005-4dc1-b2db-1ff93a07f416 3462c274b6ec44a9fa679857f63c8499 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor"} -C3N-03182.WXS.T.hg38 C3N-03182 GBM WXS tumor CPT0206560009 dc765b05-ce52-46f4-a45c-200e98c13c17_wxs_gdc_realn.bam 42058229075 BAM harmonized CPTAC3 653c8e55-ebb6-4a9d-bc8c-fdbe450b7a96 c111f490b224abd28cded24dfc708106 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor"} -C3N-03183.MethArray.Green.T C3N-03183 GBM Methylation_Array tumor CPT0206670007 203219760065_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 47f53fee-506c-4a53-97f1-376e552a8355 f90f032d723eccb24a0a45aac6204046 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor"} -C3N-03183.MethArray.Red.T C3N-03183 GBM Methylation_Array tumor CPT0206670007 203219760065_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 d205bf1a-44b1-4d17-961d-e1ceecd7ae76 5046de85a3479ce0e0d0fc8df18177c1 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor"} -C3N-03183.miRNA-Seq.S19_L008_R1.T C3N-03183 GBM miRNA-Seq tumor CPT0206670013 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L008_R1_001.unaln.bam 303420689 BAM S19_L008_R1 unaligned CPTAC3 81023989-aa19-487e-9a6c-959de018d866 65def54ae053bcf2638b79fe49d6afbb {"aliquot_tag": "ALQ_b18a1d87", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03183.miRNA-Seq.T.hg38 C3N-03183 GBM miRNA-Seq tumor CPT0206670013 e9bbd3e8-30df-47d1-9745-d97f68416d1d_mirnaseq_gdc_realn.bam 343984027 BAM harmonized CPTAC3 8d46208b-8901-436d-96d1-395c2d0fe5c9 5e8bfb99562a33251b0d41c025639f72 {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor"} -C3N-03183.RNA-Seq.chimeric.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.chimeric.gdc_realn.bam 46886078 BAM chimeric harmonized CPTAC3 a2db7931-93ac-41bf-a547-c39a9e1ca04c 4e3b501c67c8ab988da244f3de4f634b {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor"} -C3N-03183.RNA-Seq.genomic.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.genomic.gdc_realn.bam 9112682666 BAM genomic harmonized CPTAC3 7630181b-15d5-4b6d-875e-a063171dd69d be982fec38868bdc1f6f3b67096edbd9 {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor"} -C3N-03183.RNA-Seq.S6_L006_R1.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R1_001.fastq.gz 4413991517 FASTQ S6_L006_R1 unaligned CPTAC3 f18a4ee8-66b3-4796-9788-794458cfee84 e36de1c76723a10a8df57b2d0da6946d {"aliquot_tag": "ALQ_b18a1d87", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03183.RNA-Seq.S6_L006_R2.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R2_001.fastq.gz 4612215164 FASTQ S6_L006_R2 unaligned CPTAC3 e28d3399-6017-40b8-848e-83f9a99aceb1 43324c2c01fa2b3bec628d5bbc09212e {"aliquot_tag": "ALQ_b18a1d87", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03183.RNA-Seq.transcriptome.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.transcriptome.gdc_realn.bam 12247439400 BAM transcriptome harmonized CPTAC3 ce3ee5e9-7a8f-4113-995d-8c8af5d892ae 6c9649a442803fdc64254e8bc9392243 {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor"} -C3N-03183.WGS.N C3N-03183 GBM WGS blood_normal CPT0206720002 CPT0206720002.WholeGenome.RP-1303.bam 71629700578 BAM aligned CPTAC3 024a0a62-fed0-416e-8de9-a6631482c173 1f8dcb400f28e3fc923017a15e3726ca {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal"} -C3N-03183.WGS.N.hg38 C3N-03183 GBM WGS blood_normal CPT0206720002 294ad51c-8885-4fd9-9437-80f6d8f8c0d8_wgs_gdc_realn.bam 109199626484 BAM harmonized CPTAC3 91e318ce-cf46-4d6e-9e6a-dcf893614ca8 d7b378e5e307126d5ee6e2309b43411e {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal"} -C3N-03183.WGS.T C3N-03183 GBM WGS tumor CPT0206670007 CPT0206670007.WholeGenome.RP-1303.bam 67819115839 BAM aligned CPTAC3 325a6ce8-ea6f-46e0-aca8-cab60f92c8d0 94a081231619807b938135c0bae391d9 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor"} -C3N-03183.WGS.T.hg38 C3N-03183 GBM WGS tumor CPT0206670007 b977b0e2-6620-4b0b-8be6-0cb5d51e2157_wgs_gdc_realn.bam 103427956427 BAM harmonized CPTAC3 db8375c3-506d-44e6-914b-9bda5fb534c1 5b10d6f4269fee1d7819bab54ba6c496 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor"} -C3N-03183.WXS.N C3N-03183 GBM WXS blood_normal CPT0206720002 CPT0206720002.WholeExome.RP-1303.bam 22684384260 BAM aligned CPTAC3 784da77c-7c30-4cef-8002-fd86961ebb87 0e2c580a6e2ec27602b7c82968ba8ba6 {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal"} -C3N-03183.WXS.N.hg38 C3N-03183 GBM WXS blood_normal CPT0206720002 294ad51c-8885-4fd9-9437-80f6d8f8c0d8_wxs_gdc_realn.bam 31367740694 BAM harmonized CPTAC3 79d17693-71eb-4b48-85b6-297da56ffbfb 14cde0bc39f7576f2d8467244ec754b9 {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal"} -C3N-03183.WXS.T C3N-03183 GBM WXS tumor CPT0206670007 CPT0206670007.WholeExome.RP-1303.bam 23460014114 BAM aligned CPTAC3 7b2278e3-d21b-4898-9330-e37c0b769466 33d1b59656b1f171304d23c7ac7225de {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor"} -C3N-03183.WXS.T.hg38 C3N-03183 GBM WXS tumor CPT0206670007 b977b0e2-6620-4b0b-8be6-0cb5d51e2157_wxs_gdc_realn.bam 32498019307 BAM harmonized CPTAC3 ff2e5e88-cab6-43e3-ac26-68e4e63596b9 a4004032b9fbd55890e33ba98f149c33 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor"} -C3N-03184.MethArray.Green.T C3N-03184 GBM Methylation_Array tumor CPT0206780009 203219650169_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 432487f7-700c-430e-b97a-2808a25556dc 25227a09f59437efa5597cd4ee69fe13 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor"} -C3N-03184.MethArray.Red.T C3N-03184 GBM Methylation_Array tumor CPT0206780009 203219650169_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 a65dd5e3-c98b-48b8-bada-f6abd0c1b028 4ffe572b82be340dea9f92bda1382f21 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor"} -C3N-03184.miRNA-Seq.S28_L004_R1.T C3N-03184 GBM miRNA-Seq tumor CPT0206780006 181219_UNC31-K00269_0173_BHYGJJBBXX_CAACTA_S28_L004_R1_001.unaln.bam 260920979 BAM S28_L004_R1 unaligned CPTAC3 8104e91a-f2fa-49d7-88df-9cf463364904 4cff8b52d7d6f10b6677f9e7a6943ee5 {"aliquot_tag": "ALQ_91f79c3d", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03184.miRNA-Seq.T.hg38 C3N-03184 GBM miRNA-Seq tumor CPT0206780006 573253ad-5a46-4764-bf1a-608401b1b498_mirnaseq_gdc_realn.bam 300169458 BAM harmonized CPTAC3 bf19717c-4904-4359-87c1-283f469eb03f ad5778cd002b0925fca58b56b7160263 {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor"} -C3N-03184.RNA-Seq.chimeric.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.chimeric.gdc_realn.bam 291038627 BAM chimeric harmonized CPTAC3 df166173-5790-49c7-99ef-72458498dca8 2bcb7510ec953e551c1c840d0548b7f4 {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor"} -C3N-03184.RNA-Seq.genomic.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.genomic.gdc_realn.bam 9048442267 BAM genomic harmonized CPTAC3 06d76886-ad9f-472f-8f8a-b707952ab5f6 561211b320d2d3426d340e75de6e195a {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor"} -C3N-03184.RNA-Seq.S3_L001_R1.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4144799085 FASTQ S3_L001_R1 unaligned CPTAC3 5c5ae7fc-2183-47f7-af45-9c07dc35bae7 19330c2f638500c3ac10d9a304a738b7 {"aliquot_tag": "ALQ_91f79c3d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03184.RNA-Seq.S3_L001_R2.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4535735535 FASTQ S3_L001_R2 unaligned CPTAC3 ae17a1e8-ee58-47dd-987c-ae79b11f38e2 3cbe3f84148ac2902e18719b60225ebb {"aliquot_tag": "ALQ_91f79c3d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03184.RNA-Seq.transcriptome.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.transcriptome.gdc_realn.bam 10497646301 BAM transcriptome harmonized CPTAC3 b7566257-b4e4-400f-ab8d-beb68ea1385d 9181e9efaf055f6e83ffdc14d3f50508 {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor"} -C3N-03184.scRNA-Seq.S2_L004_R1.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R1_001.fastq.gz 10712601524 FASTQ S2_L004_R1 unaligned CPTAC3 8f1fa942-150a-4023-b33a-ae9a9ea3ef79 99689b02ff750265f06090c65a96738d {"aliquot_tag": "ALQ_14cacff5", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03184.scRNA-Seq.S2_L004_R2.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R2_001.fastq.gz 24360054740 FASTQ S2_L004_R2 unaligned CPTAC3 fe6efe38-2f32-4fef-9ce3-6cd4e9de3744 ba4224ec64bcbcd50ce56ac2871bcff2 {"aliquot_tag": "ALQ_14cacff5", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03184.scRNA-Seq.T.hg38 C3N-03184 GBM scRNA-Seq tumor CPT0206770002 possorted_genome_bam.bam 27748877601 BAM harmonized CPTAC3 81af3f7d-1e43-47cb-88f9-07fdb39b7cd3 6fc463f522df04b5194fd0fb91c8b836 {"aliquot_tag": "ALQ_14cacff5", "gdc_sample_type": "Primary Tumor"} -C3N-03184.WGS.N C3N-03184 GBM WGS blood_normal CPT0206830002 CPT0206830002.WholeGenome.RP-1303.bam 60404443966 BAM aligned CPTAC3 6901c856-f491-4b7d-84af-604abea50477 57112c05adb29bb0b38134929f1fe591 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03184.WGS.N.hg38 C3N-03184 GBM WGS blood_normal CPT0206830002 e5a7f2ee-15f8-4c5b-8ea8-c0f57ab8f65d_wgs_gdc_realn.bam 90129244059 BAM harmonized CPTAC3 6555a211-793e-44aa-8a93-5e82c66f40b4 bc146fd46f8af5a813c0cddeeb674f04 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03184.WGS.T C3N-03184 GBM WGS tumor CPT0206780009 CPT0206780009.WholeGenome.RP-1303.bam 58888584690 BAM aligned CPTAC3 b7a6fccb-02b4-471e-93fb-331c1a859cf4 016a34d8955476cbb8936e821de84493 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor"} -C3N-03184.WGS.T.hg38 C3N-03184 GBM WGS tumor CPT0206780009 96da1817-dec2-45c2-9ea7-f654ddebd97a_wgs_gdc_realn.bam 87615735537 BAM harmonized CPTAC3 edb32e91-88ec-41e3-ae0b-1b71c84a3f2e 327f675e4af1cd72626ba1b32d814029 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor"} -C3N-03184.WXS.N C3N-03184 GBM WXS blood_normal CPT0206830002 CPT0206830002.WholeExome.RP-1303.bam 25983463240 BAM aligned CPTAC3 c89e6524-1135-494a-b676-a2f5d2714655 92d4e5aba7d3936c01861c7d3fa19e79 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03184.WXS.N.hg38 C3N-03184 GBM WXS blood_normal CPT0206830002 e5a7f2ee-15f8-4c5b-8ea8-c0f57ab8f65d_wxs_gdc_realn.bam 36048424982 BAM harmonized CPTAC3 41f755ca-0779-44c9-8203-b0444f1a7a82 2092a6b3f3e403ec1f578cc0c572ce99 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03184.WXS.T C3N-03184 GBM WXS tumor CPT0206780009 CPT0206780009.WholeExome.RP-1303.bam 23915621839 BAM aligned CPTAC3 fddc640d-3776-48cd-abcc-c2f69bc07883 31bfd94fb7097d7a1ff9fe5ca66dba45 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor"} -C3N-03184.WXS.T.hg38 C3N-03184 GBM WXS tumor CPT0206780009 96da1817-dec2-45c2-9ea7-f654ddebd97a_wxs_gdc_realn.bam 32746186220 BAM harmonized CPTAC3 86cf4347-a6c3-49c6-bac4-9cca7e086fac 0730b71defd754beec7464c178e5e4a8 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor"} -C3N-03186.MethArray.Green.T C3N-03186 GBM Methylation_Array tumor CPT0206880009 203219670217_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a32e471f-1abf-47a1-83e2-abbfa1babab6 adf3f21fab902d79d5dd443a3f075bae {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor"} -C3N-03186.MethArray.Red.T C3N-03186 GBM Methylation_Array tumor CPT0206880009 203219670217_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 1dc9e99c-6d18-4df2-af8d-5e2c3f51b098 2bd3fbf97b0133b1b7725441a092ec8b {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor"} -C3N-03186.miRNA-Seq.S29_L004_R1.T C3N-03186 GBM miRNA-Seq tumor CPT0206880006 181219_UNC31-K00269_0173_BHYGJJBBXX_CACCGG_S29_L004_R1_001.unaln.bam 259425117 BAM S29_L004_R1 unaligned CPTAC3 577d0ce4-014e-4129-85ad-5a794eb4bf8c f04b95605c64621b2669b77935f8d74e {"aliquot_tag": "ALQ_60a12ee8", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03186.miRNA-Seq.T.hg38 C3N-03186 GBM miRNA-Seq tumor CPT0206880006 29864ea3-196b-4701-89d5-7874215d93c3_mirnaseq_gdc_realn.bam 297013313 BAM harmonized CPTAC3 ddf8725a-b232-4d1a-90f7-13916203189b b757637a75fa814a6fbc07f760cd1551 {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor"} -C3N-03186.RNA-Seq.chimeric.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.chimeric.gdc_realn.bam 224449155 BAM chimeric harmonized CPTAC3 aed12378-e82a-4e43-be20-4aee2ee534e4 513c2244a9728b19f527f072d26566d6 {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor"} -C3N-03186.RNA-Seq.genomic.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.genomic.gdc_realn.bam 8808409337 BAM genomic harmonized CPTAC3 1ea8c9ee-6bcf-4253-b1ee-0e2c9e265b88 26380014d73c0adb44d71fa2232b976c {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor"} -C3N-03186.RNA-Seq.S2_L001_R1.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3759023432 FASTQ S2_L001_R1 unaligned CPTAC3 87bab1d0-10a6-491d-8199-c5edd2946f2b 5f194eec615c5ca976d3a64bd0106c35 {"aliquot_tag": "ALQ_60a12ee8", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03186.RNA-Seq.S2_L001_R2.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4161674954 FASTQ S2_L001_R2 unaligned CPTAC3 9d47e501-79d8-4891-9c5c-8fb876837447 7f03c4090cfd22a7bee82458fecd6c4c {"aliquot_tag": "ALQ_60a12ee8", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03186.RNA-Seq.transcriptome.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.transcriptome.gdc_realn.bam 10416378361 BAM transcriptome harmonized CPTAC3 a4de6238-89a7-4daa-bb0c-179f2d64ab53 f7c85c4bf1506fca693386a96281fe92 {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor"} -C3N-03186.scRNA-Seq.S4_L001_R1.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R1_001.fastq.gz 10703766166 FASTQ S4_L001_R1 unaligned CPTAC3 9df1cb87-32b3-4477-982b-9af04c3f4ccd 047d7739b6a6ebeface55d18c487b02a {"aliquot_tag": "ALQ_8eaf4fc4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03186.scRNA-Seq.S4_L001_R2.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R2_001.fastq.gz 24638505648 FASTQ S4_L001_R2 unaligned CPTAC3 25dd41d3-2be1-46c4-9630-443e70d3fbd3 fd3d03b1ea01950154acb863c658a6d4 {"aliquot_tag": "ALQ_8eaf4fc4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03186.scRNA-Seq.T.hg38 C3N-03186 GBM scRNA-Seq tumor CPT0206880004 possorted_genome_bam.bam 24794207809 BAM harmonized CPTAC3 cb7f2b9f-026c-474c-8597-d255f446da18 a8d615564506880e1594a12ed51befc1 {"aliquot_tag": "ALQ_8eaf4fc4", "gdc_sample_type": "Primary Tumor"} -C3N-03186.WGS.N C3N-03186 GBM WGS blood_normal CPT0206940002 CPT0206940002.WholeGenome.RP-1303.bam 65040645125 BAM aligned CPTAC3 9f5d33fa-acdf-44fe-b14f-ece6991eb1bf 155895ce934cf3f649541e1a26eba8d7 {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal"} -C3N-03186.WGS.N.hg38 C3N-03186 GBM WGS blood_normal CPT0206940002 6e67dba7-0c71-4c45-9d0b-d93b5a185421_wgs_gdc_realn.bam 97634516512 BAM harmonized CPTAC3 b30947ce-f48f-4950-a79b-c14d5b5f8260 528850f8287a1fb0c30349d3bc5ef967 {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal"} -C3N-03186.WGS.T C3N-03186 GBM WGS tumor CPT0206880009 CPT0206880009.WholeGenome.RP-1303.bam 77551110154 BAM aligned CPTAC3 16fc5973-a920-4c24-ba52-bf1003b15320 0162d841a527b869868fa690015b111d {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor"} -C3N-03186.WGS.T.hg38 C3N-03186 GBM WGS tumor CPT0206880009 c30dd2c3-895f-44a7-aa8c-6013bae94327_wgs_gdc_realn.bam 116275102027 BAM harmonized CPTAC3 4656a5ac-0538-41d3-b81e-dd7cc4afa2c7 3a7f68d5c5622ee9879eb2a95145219b {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor"} -C3N-03186.WXS.N C3N-03186 GBM WXS blood_normal CPT0206940002 CPT0206940002.WholeExome.RP-1303.bam 25823559443 BAM aligned CPTAC3 047fcc60-52dc-44c5-a807-3cbfe0243806 e8c450ecac4060f26abb942b3de84156 {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal"} -C3N-03186.WXS.N.hg38 C3N-03186 GBM WXS blood_normal CPT0206940002 6e67dba7-0c71-4c45-9d0b-d93b5a185421_wxs_gdc_realn.bam 36421780476 BAM harmonized CPTAC3 da4581cd-acbb-43dc-a30a-9d32e3fd5a84 70d6ba3c7d80891f39a1e0031d1c800d {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal"} -C3N-03186.WXS.T C3N-03186 GBM WXS tumor CPT0206880009 CPT0206880009.WholeExome.RP-1303.bam 31278848454 BAM aligned CPTAC3 ebb1c679-a3ad-476f-984b-f00e83fd745c 7eb5a8a6844890e86cf232e315676415 {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor"} -C3N-03186.WXS.T.hg38 C3N-03186 GBM WXS tumor CPT0206880009 c30dd2c3-895f-44a7-aa8c-6013bae94327_wxs_gdc_realn.bam 43217347320 BAM harmonized CPTAC3 5072d90a-cdd8-4968-9d27-071d91846d9a 1df9ffd941877f3eb7983824aff663f0 {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor"} -C3N-03188.MethArray.Green.T C3N-03188 GBM Methylation_Array tumor CPT0207030009 203219650042_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 088e4c23-06cc-464a-9151-29ecfe7a693a 9c58cc020294b8a8d53c73ced60a86e8 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.MethArray.Red.T C3N-03188 GBM Methylation_Array tumor CPT0207030009 203219650042_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 9a3c6d18-3143-4faf-83c2-9202b8f9700f e8e8003d71a75e0633810cc336652575 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.miRNA-Seq.S16_L008_R1.T C3N-03188 GBM miRNA-Seq tumor CPT0207030013 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L008_R1_001.unaln.bam 251151360 BAM S16_L008_R1 unaligned CPTAC3 d37842f6-bd70-4a7a-b673-e64fa1f236d9 2d071b7dcbfe9f5b390386c354176813 {"aliquot_tag": "ALQ_342453ee", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.miRNA-Seq.T.hg38 C3N-03188 GBM miRNA-Seq tumor CPT0207030013 797da332-0a38-4ba6-80be-e5abce2060e7_mirnaseq_gdc_realn.bam 282463571 BAM harmonized CPTAC3 2a3d62cf-320b-43d6-ac42-8a52f9e62786 886f0f764ed74fe6f5ca03748c361b14 {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor"} -C3N-03188.RNA-Seq.chimeric.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.chimeric.gdc_realn.bam 41839644 BAM chimeric harmonized CPTAC3 62bb2cc9-2a28-4b7d-b94f-73c162f176e9 e2aed35c686814198739f6f54b0e6c27 {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor"} -C3N-03188.RNA-Seq.genomic.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.genomic.gdc_realn.bam 8040292847 BAM genomic harmonized CPTAC3 dd2295a7-1762-4ec2-a84c-5ad4653f64aa 1c52eba9955332dfd8317dec28c818aa {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor"} -C3N-03188.RNA-Seq.S1_L005_R1.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R1_001.fastq.gz 3834393988 FASTQ S1_L005_R1 unaligned CPTAC3 76ca9742-918c-4db7-ac65-e842a937121e 58246b1060892a74edbe26414d1c3db0 {"aliquot_tag": "ALQ_342453ee", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.RNA-Seq.S1_L005_R2.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R2_001.fastq.gz 3998796827 FASTQ S1_L005_R2 unaligned CPTAC3 00da971e-c069-4aaf-a9b5-80a313d7b0bf 927cd31201275b9bc1050ebeed63e981 {"aliquot_tag": "ALQ_342453ee", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03188.RNA-Seq.transcriptome.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.transcriptome.gdc_realn.bam 10378849587 BAM transcriptome harmonized CPTAC3 f2470f17-e00c-4376-adfc-9b2a59d8ef08 5f98711717fed3307f1f8efabef54d57 {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor"} -C3N-03188.scRNA-Seq.S4_L003_R1.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R1_001.fastq.gz 13652430515 FASTQ S4_L003_R1 unaligned CPTAC3 50bf9d3e-e44e-43e2-ac84-82d515902fff d8907a5af8b8102c9c7d7c663f4c3d2d {"aliquot_tag": "ALQ_a3f68a66", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.scRNA-Seq.S4_L003_R2.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R2_001.fastq.gz 33711334298 FASTQ S4_L003_R2 unaligned CPTAC3 4839997b-24aa-4d29-939a-7bf9c2cb44c6 ac48fd16a0effaab4ea46ad0fc5e0020 {"aliquot_tag": "ALQ_a3f68a66", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03188.scRNA-Seq.T.hg38 C3N-03188 GBM scRNA-Seq tumor CPT0207030018 possorted_genome_bam.bam 40023051443 BAM harmonized CPTAC3 a06d7756-5df6-475c-89bd-bd1dd1555104 c23494e630462c2d3fd9e74451e4b181 {"aliquot_tag": "ALQ_a3f68a66", "gdc_sample_type": "Primary Tumor"} -C3N-03188.WGS.N C3N-03188 GBM WGS blood_normal CPT0207080002 CPT0207080002.WholeGenome.RP-1303.bam 53507871721 BAM aligned CPTAC3 cf3b8ee2-a68e-4b14-a0ef-5a49db68a16d 501732d96e90137806e96abd2132ee91 {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal"} -C3N-03188.WGS.N.hg38 C3N-03188 GBM WGS blood_normal CPT0207080002 d018b972-f90c-490c-a9f4-da37c18224e0_wgs_gdc_realn.bam 79411908145 BAM harmonized CPTAC3 b735008d-191e-43a9-9185-e6385b53018c cdc78e6518e4c7403b05d8954beb71c2 {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal"} -C3N-03188.WGS.T C3N-03188 GBM WGS tumor CPT0207030009 CPT0207030009.WholeGenome.RP-1303.bam 59348737026 BAM aligned CPTAC3 b7639cf2-56e0-49c7-af72-b4aa1b59f60f 5712d3bc068fbf6b6a2b749ddfb99cc4 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.WGS.T.hg38 C3N-03188 GBM WGS tumor CPT0207030009 42276cec-9568-41dc-9ec2-5776cc3d9c55_wgs_gdc_realn.bam 90197216170 BAM harmonized CPTAC3 f2dec90b-70b4-4b53-bf41-503a0989c0d4 80054705aabf6cab32d253c646e949fe {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.WXS.N C3N-03188 GBM WXS blood_normal CPT0207080002 CPT0207080002.WholeExome.RP-1303.bam 23165313560 BAM aligned CPTAC3 86ac4b9b-b8da-4c2a-aa1c-a74d3dfbd47d 62827fdc14085df2d38c812ab05c8542 {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal"} -C3N-03188.WXS.N.hg38 C3N-03188 GBM WXS blood_normal CPT0207080002 d018b972-f90c-490c-a9f4-da37c18224e0_wxs_gdc_realn.bam 31928104280 BAM harmonized CPTAC3 cefaa0cb-ac0a-4738-a03f-512ffdee5526 9616bd857ab4edb777a418b78161fa7b {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal"} -C3N-03188.WXS.T C3N-03188 GBM WXS tumor CPT0207030009 CPT0207030009.WholeExome.RP-1303.bam 25793588577 BAM aligned CPTAC3 46bebe5b-432e-4597-a895-9180a55fe14a dcdbd555ad2723f682ca2aaa7c0fe0cd {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor"} -C3N-03188.WXS.T.hg38 C3N-03188 GBM WXS tumor CPT0207030009 42276cec-9568-41dc-9ec2-5776cc3d9c55_wxs_gdc_realn.bam 35750459782 BAM harmonized CPTAC3 5b316a81-0ebb-4d67-99e9-4a04c5b8d255 487e590c1d6a586d24283cb8cbc4c393 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor"} -C3N-03190.MethArray.Green.T C3N-03190 PDA Methylation_Array tumor CPT0236560007 203561620012_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 25e9f8ad-12bb-4423-9598-873703a088ae f870ac1ef3d6d686739ebfc846147e00 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor"} -C3N-03190.MethArray.Red.T C3N-03190 PDA Methylation_Array tumor CPT0236560007 203561620012_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 c64a0849-a91d-4ec0-bfb4-849a449fa966 172b48f2538486dbfaec18ac7ce7e870 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor"} -C3N-03190.miRNA-Seq.S23_L004_R1.T C3N-03190 PDA miRNA-Seq tumor CPT0236560010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L004_R1_001.unaln.bam 192681943 BAM S23_L004_R1 unaligned CPTAC3 8b60b59b-8718-4e7f-9834-3ced073cc7b1 9ed5f9e83f5e71917b47410250e1a633 {"aliquot_tag": "ALQ_1df810c0", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03190.miRNA-Seq.T.hg38 C3N-03190 PDA miRNA-Seq tumor CPT0236560010 1dc57242-3126-4af2-90e6-b033762c408a_mirnaseq_gdc_realn.bam 218002181 BAM harmonized CPTAC3 204b0607-bff2-413d-8541-02f7e55fbbff 678884d54befc32cfb34792fcb50f298 {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor"} -C3N-03190.RNA-Seq.chimeric.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.chimeric.gdc_realn.bam 35137200 BAM chimeric harmonized CPTAC3 33a84489-ac22-4cc6-832b-c47b885117f5 d33bdba46cbb23733fad5f59919e381d {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor"} -C3N-03190.RNA-Seq.genomic.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.genomic.gdc_realn.bam 10162809253 BAM genomic harmonized CPTAC3 5e5297f4-6137-496b-b183-9ca7e9da1b72 b12b27d03bb3598c6bf60a1cdfcea25f {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor"} -C3N-03190.RNA-Seq.S4_L001_R1.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4889574051 FASTQ S4_L001_R1 unaligned CPTAC3 054f03c6-579f-4f81-9e49-70c7e4267788 05572edb298a0d35ca031bb0425860ca {"aliquot_tag": "ALQ_1df810c0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03190.RNA-Seq.S4_L001_R2.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 5017397148 FASTQ S4_L001_R2 unaligned CPTAC3 51bf57de-5b73-41a0-8d32-ff476c13a1e8 3c98cb32f7e9341f01f93709989e179f {"aliquot_tag": "ALQ_1df810c0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03190.RNA-Seq.transcriptome.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.transcriptome.gdc_realn.bam 13485932532 BAM transcriptome harmonized CPTAC3 4d07db7f-301a-4794-a2cc-1eaa04ca9bf1 69fb35bb64b8294420a98435f491e144 {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor"} -C3N-03190.WGS.N C3N-03190 PDA WGS blood_normal CPT0236610002 CPT0236610002.WholeGenome.RP-1303.bam 73518655440 BAM aligned CPTAC3 31e0d81f-ad9b-410a-9b57-f98fc5955593 92070da07777c0d93381e2af332f50ca {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal"} -C3N-03190.WGS.N.hg38 C3N-03190 PDA WGS blood_normal CPT0236610002 15ca8061-9d8f-47c8-aa4f-a5ecc3445d8d_wgs_gdc_realn.bam 108902893542 BAM harmonized CPTAC3 bdb9597c-08fe-4092-a1cc-228a8327d750 32910341e543e49a0188f99414771cd2 {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal"} -C3N-03190.WGS.T C3N-03190 PDA WGS tumor CPT0236560007 CPT0236560007.WholeGenome.RP-1303.bam 127825661300 BAM aligned CPTAC3 b159fafe-2cd9-4c1b-9b1c-c97f6f441d15 2349f1d32fdb0c29e305fa5ea2e28c9c {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor"} -C3N-03190.WGS.T.hg38 C3N-03190 PDA WGS tumor CPT0236560007 de5a663d-b85c-428b-8a08-ec9094d232af_wgs_gdc_realn.bam 186230169290 BAM harmonized CPTAC3 22c52e68-339b-49da-b516-746fa3a9f233 fde3a1da2da951605ca3ada38cd98cee {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor"} -C3N-03190.WXS.N C3N-03190 PDA WXS blood_normal CPT0236610002 CPT0236610002.WholeExome.RP-1303.bam 26378565034 BAM aligned CPTAC3 b9a17d7b-00de-473d-9515-cb68881dad26 2be8408b149dcee8a4738865287d9bd7 {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal"} -C3N-03190.WXS.N.hg38 C3N-03190 PDA WXS blood_normal CPT0236610002 15ca8061-9d8f-47c8-aa4f-a5ecc3445d8d_wxs_gdc_realn.bam 37056856066 BAM harmonized CPTAC3 7d1eb416-c93e-4044-b738-264127182e8a 63f034890777538f519824095d74cf4b {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal"} -C3N-03190.WXS.T C3N-03190 PDA WXS tumor CPT0236560007 CPT0236560007.WholeExome.RP-1303.bam 65656179536 BAM aligned CPTAC3 bc3b8121-71aa-4897-ae82-8698ed233189 6525fc050f3e5ffde45467b85db545d3 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor"} -C3N-03190.WXS.T.hg38 C3N-03190 PDA WXS tumor CPT0236560007 de5a663d-b85c-428b-8a08-ec9094d232af_wxs_gdc_realn.bam 90491213154 BAM harmonized CPTAC3 86672121-35c2-45d7-977b-8f84c1eaaca3 db9fc4680c98c363dddbfa05b30fca37 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor"} -C3N-03202.MethArray.Green.A C3N-03202 LUAD Methylation_Array tissue_normal CPT0185040006 203561620040_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e7ed76c4-64a3-4bee-9b07-30834d167dcf 5dc846007e160062449ed5d3ac09b646 {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.MethArray.Green.T C3N-03202 LUAD Methylation_Array tumor CPT0185020007 203561620064_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 54ff8e1e-dff6-484b-b1c7-f7b56e176b47 d4b98096f22e749b4ac547d7eeca476c {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor"} -C3N-03202.MethArray.Red.A C3N-03202 LUAD Methylation_Array tissue_normal CPT0185040006 203561620040_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 7ffb5561-e84a-40ca-aac5-db68a3e9bec9 401e2802e90e5603c29c164e005623df {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.MethArray.Red.T C3N-03202 LUAD Methylation_Array tumor CPT0185020007 203561620064_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 3e5dc323-0f5b-461a-a3fe-ecb14439be43 ac488dbeacc9c19e9c20aa7a993fad12 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor"} -C3N-03202.miRNA-Seq.A.hg38 C3N-03202 LUAD miRNA-Seq tissue_normal CPT0185040009 f25a7def-3c10-4b65-a212-597cd605c8a6_mirnaseq_gdc_realn.bam 255080938 BAM harmonized CPTAC3 2fea1e9a-cae8-485c-8395-9041dc2c4eac d1a83069420945640c902b4e0759f5e5 {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.miRNA-Seq.S19_L005_R1.T C3N-03202 LUAD miRNA-Seq tumor CPT0185020010 190722_UNC31-K00269_0234_AH7VGTBBXY_GAGTGG_S19_L005_R1_001.unaln.bam 208177575 BAM S19_L005_R1 unaligned CPTAC3 2cb58137-5477-447b-beb5-0fa64f9c8419 f776d9fc230ed363b9368e8cf77d1bb9 {"aliquot_tag": "ALQ_edba1dbd", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03202.miRNA-Seq.S34_L007_R1.A C3N-03202 LUAD miRNA-Seq tissue_normal CPT0185040009 190712_UNC32-K00270_0192_BH7HL3BBXY_GGCTAC_S34_L007_R1_001.unaln.bam 220937051 BAM S34_L007_R1 unaligned CPTAC3 bac43242-fe0d-4258-876b-4ccdc00b735f 23efd8173ed453ae82bb1e25423dc4ff {"aliquot_tag": "ALQ_23d61f8", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.miRNA-Seq.T.hg38 C3N-03202 LUAD miRNA-Seq tumor CPT0185020010 edca62a0-2796-4074-8b48-9bc3d6111ea1_mirnaseq_gdc_realn.bam 229492060 BAM harmonized CPTAC3 f860b83a-9a53-4e10-bb71-84bf9c3c65e1 0ff37ba93be176005dea730a022cc810 {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor"} -C3N-03202.RNA-Seq.chimeric.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.chimeric.gdc_realn.bam 75659643 BAM chimeric harmonized CPTAC3 4ff44f72-ed7c-4885-a5d7-b506a223c83e 023c70d5189e954da5b5183632e54617 {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.RNA-Seq.chimeric.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.chimeric.gdc_realn.bam 38553401 BAM chimeric harmonized CPTAC3 c9a4b841-bb60-4b55-b308-a0c489cde981 a44f5e04001379dacabc295dc5b9097d {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor"} -C3N-03202.RNA-Seq.genomic.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.genomic.gdc_realn.bam 8923127837 BAM genomic harmonized CPTAC3 4c265305-e3cd-4aea-ad3b-24e6b5741177 2e9cde01d05ba5247c2a16abf5184fd2 {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.RNA-Seq.genomic.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.genomic.gdc_realn.bam 15594861101 BAM genomic harmonized CPTAC3 3a4157b8-b1f4-4e57-a99a-35c7277385d3 ebd118acbc6e3711b3b0dc5d3c474a6a {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor"} -C3N-03202.RNA-Seq.S1_L001_R1.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R1_001.fastq.gz 4587829806 FASTQ S1_L001_R1 unaligned CPTAC3 183e8bbe-746b-42e7-934a-8a397997e1e4 2738262dc07c7d3c5b6a38f674490c73 {"aliquot_tag": "ALQ_edba1dbd", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03202.RNA-Seq.S1_L001_R2.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R2_001.fastq.gz 5216133093 FASTQ S1_L001_R2 unaligned CPTAC3 7f22ed33-7dcb-4014-ab1a-c41bf68dd1f1 fef6ce9c4c97e379a8e806690a7e6cba {"aliquot_tag": "ALQ_edba1dbd", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03202.RNA-Seq.S8_L002_R1.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R1_001.fastq.gz 3506657711 FASTQ S8_L002_R1 unaligned CPTAC3 8bee3267-ddf6-4203-8344-ff0ba4dfda0a e2c45123e268cfee8d5233f6bd8cc443 {"aliquot_tag": "ALQ_23d61f8", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.RNA-Seq.S8_L002_R2.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R2_001.fastq.gz 3902942117 FASTQ S8_L002_R2 unaligned CPTAC3 f21461d0-82d6-4fc5-a031-c50cdbbc3a85 3804364a72afef04883795e92c9cb03e {"aliquot_tag": "ALQ_23d61f8", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.RNA-Seq.transcriptome.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.transcriptome.gdc_realn.bam 9148436707 BAM transcriptome harmonized CPTAC3 950fcae8-da88-411d-bdc7-d0c673e4dda8 3d306ee7bd6d1bfda466eaa61993963d {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.RNA-Seq.transcriptome.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.transcriptome.gdc_realn.bam 10679579404 BAM transcriptome harmonized CPTAC3 55e2cfd1-b339-4759-b20e-f9fad65f6d67 e41f0e16d1cf7afbac842b853cbf1e1d {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor"} -C3N-03202.WGS.N C3N-03202 LUAD WGS blood_normal CPT0185080002 CPT0185080002.WholeGenome.RP-1303.bam 78760049301 BAM aligned CPTAC3 971be281-e3d7-4a18-9d05-a3fa370da414 b0afc8c30a9d1bcc4780cfc24d155571 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal"} -C3N-03202.WGS.N.hg38 C3N-03202 LUAD WGS blood_normal CPT0185080002 fab521c6-60cf-4a16-b32f-d066d19c3bc1_wgs_gdc_realn.bam 116730769917 BAM harmonized CPTAC3 0542bf96-1726-465e-9fcb-a5ca090e2832 7bd0b8983b4299fed08e6d11af25e243 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal"} -C3N-03202.WGS.T C3N-03202 LUAD WGS tumor CPT0185020007 CPT0185020007.WholeGenome.RP-1303.bam 63428256020 BAM aligned CPTAC3 a962abbc-6301-411c-a919-68330df04bf8 f3ff3d56887e7f2801719de34d3566a5 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor"} -C3N-03202.WGS.T.hg38 C3N-03202 LUAD WGS tumor CPT0185020007 af32a993-92b4-4a50-87fb-b2f022d1ce71_wgs_gdc_realn.bam 93606358597 BAM harmonized CPTAC3 5a0aeb4f-7973-481f-9199-9dc63417f1e7 b49f4286248774a4cefc5a2d346cf22c {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor"} -C3N-03202.WXS.A C3N-03202 LUAD WXS tissue_normal CPT0185040006 CPT0185040006.WholeExome.RP-1303.bam 20436815252 BAM aligned CPTAC3 b4cd2da4-9983-4584-999e-25f3a6607364 d302defd23cd25e2b341dd7db4699b98 {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.WXS.A.hg38 C3N-03202 LUAD WXS tissue_normal CPT0185040006 183cb04c-ba51-406a-b338-aa9d138205d3_wxs_gdc_realn.bam 28503567924 BAM harmonized CPTAC3 b8c9f3e1-0dc4-4f80-9130-22051c54207b 1d17758b066383a640d4bf5084a67691 {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03202.WXS.N C3N-03202 LUAD WXS blood_normal CPT0185080002 CPT0185080002.WholeExome.RP-1303.bam 27720118002 BAM aligned CPTAC3 404d5452-68de-42a3-9762-0342d37ecb04 7cbe4e03c65dbb8f2c085a20c6d07530 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal"} -C3N-03202.WXS.N.hg38 C3N-03202 LUAD WXS blood_normal CPT0185080002 fab521c6-60cf-4a16-b32f-d066d19c3bc1_wxs_gdc_realn.bam 37865196915 BAM harmonized CPTAC3 40e83d14-2ffa-4ed2-b414-7fb8bece4a31 2820ae04567dab3cb5117810ffe34e34 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal"} -C3N-03202.WXS.T C3N-03202 LUAD WXS tumor CPT0185020007 CPT0185020007.WholeExome.RP-1303.bam 26791260917 BAM aligned CPTAC3 7612f9cd-1dec-4ad3-8a5d-9bd75d612b7b bb1852e70c03b9564d364c0430471f09 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor"} -C3N-03202.WXS.T.hg38 C3N-03202 LUAD WXS tumor CPT0185020007 af32a993-92b4-4a50-87fb-b2f022d1ce71_wxs_gdc_realn.bam 36842196652 BAM harmonized CPTAC3 f4a913d7-f17c-4147-9267-007ac663f1d4 bec1ff4ac36370278c816ff300893d54 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor"} -C3N-03204.MethArray.Green.A C3N-03204 LSCC Methylation_Array tissue_normal CPT0209510006 203219760081_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 61334843-a93b-445b-ba63-4b3bceb22679 bf93fc5da2f59e6bbc145c1483275ecb {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.MethArray.Green.T C3N-03204 LSCC Methylation_Array tumor CPT0209490006 203219670118_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 96a38960-ba50-4cb8-8c19-5befd85f1656 362d1bbff89d988b333cda41f0c8a3d0 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor"} -C3N-03204.MethArray.Red.A C3N-03204 LSCC Methylation_Array tissue_normal CPT0209510006 203219760081_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 3248947f-51e9-4cd3-9158-2070afe64b22 87d88d445e45939f1aedc48c7b69acff {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.MethArray.Red.T C3N-03204 LSCC Methylation_Array tumor CPT0209490006 203219670118_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5ac724e-a959-418a-9eb9-c8c23c2b268e e625d486e7b33ec847623a6bd6542460 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor"} -C3N-03204.miRNA-Seq.A.hg38 C3N-03204 LSCC miRNA-Seq tissue_normal CPT0209510009 85cf518d-b3c9-4dfd-acf0-836f4ef82d79_mirnaseq_gdc_realn.bam 239259991 BAM harmonized CPTAC3 20dec18f-e547-46fb-a278-8ef763fb6e53 657a58248b6a7e1e08381b9d4ef90230 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.miRNA-Seq.S42_L004_R1.A C3N-03204 LSCC miRNA-Seq tissue_normal CPT0209510009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGATC_S42_L004_R1_001.unaln.bam 217031766 BAM S42_L004_R1 unaligned CPTAC3 132a6c3a-2488-4c16-9fec-a8a319634289 60fa3594de03bca6deca31400339ca0b {"aliquot_tag": "ALQ_b7d8323f", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.miRNA-Seq.S47_L002_R1.T C3N-03204 LSCC miRNA-Seq tumor CPT0209490009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGATGT_S47_L002_R1_001.unaln.bam 236418054 BAM S47_L002_R1 unaligned CPTAC3 a0710ef8-184d-4008-b3e4-56d1ac1917db d0e6c6778aaf625aea0b3b35afeef7c6 {"aliquot_tag": "ALQ_4cf4aa5b", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03204.miRNA-Seq.T.hg38 C3N-03204 LSCC miRNA-Seq tumor CPT0209490009 7cf0816e-0f9f-434a-8557-53c90b7670bd_mirnaseq_gdc_realn.bam 256304041 BAM harmonized CPTAC3 4cbf5823-71ab-4568-8fb4-921c98234ac8 9e2ea7a4cab0530d1464a4dc87d73c80 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor"} -C3N-03204.RNA-Seq.chimeric.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.chimeric.gdc_realn.bam 191125691 BAM chimeric harmonized CPTAC3 f4c89f5c-84be-4847-8d9a-4d9bc8475110 1e6a59c786b99ebb0f8aacc471ca5cf0 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.RNA-Seq.chimeric.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.chimeric.gdc_realn.bam 64096427 BAM chimeric harmonized CPTAC3 d4044162-d935-40ef-a81d-c36f613ea66d eff38a18ac065e8d850de96e425513c3 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor"} -C3N-03204.RNA-Seq.genomic.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.genomic.gdc_realn.bam 8032314548 BAM genomic harmonized CPTAC3 8e9addd8-5ac5-4599-95d9-b0ee628f0d31 a4cc19c2803cf3cc414928f9903277d6 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.RNA-Seq.genomic.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.genomic.gdc_realn.bam 8423202625 BAM genomic harmonized CPTAC3 fdf48999-96dd-48b6-89dc-3a43afe4a61b 2d974462333f21925eb3dab80552e736 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor"} -C3N-03204.RNA-Seq.S11_L003_R1.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3938256386 FASTQ S11_L003_R1 unaligned CPTAC3 d5277c63-b4be-4f9b-87ea-9ac078f04936 e7fc94b9afc6a2d9afd559e95320acc0 {"aliquot_tag": "ALQ_4cf4aa5b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03204.RNA-Seq.S11_L003_R2.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4253842043 FASTQ S11_L003_R2 unaligned CPTAC3 f295e7c3-82a0-4938-ada6-1aebcee8ab85 c2e9b7c5f6f74b1a722c4d1ac35d93df {"aliquot_tag": "ALQ_4cf4aa5b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03204.RNA-Seq.S8_L008_R1.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3748428248 FASTQ S8_L008_R1 unaligned CPTAC3 83661a30-ad05-431c-af51-b787c34110c3 4be282a577ad28cdf79b93b49df87637 {"aliquot_tag": "ALQ_b7d8323f", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.RNA-Seq.S8_L008_R2.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4250342811 FASTQ S8_L008_R2 unaligned CPTAC3 f103cbba-4c2f-43f7-8712-a7b3552039f0 80c957df01a09345f7663231242ac7ec {"aliquot_tag": "ALQ_b7d8323f", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.RNA-Seq.transcriptome.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.transcriptome.gdc_realn.bam 9993155660 BAM transcriptome harmonized CPTAC3 42355b3b-9335-4760-a55e-8beae58ea145 4ae1842babd63ac351b863561bbc5720 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.RNA-Seq.transcriptome.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.transcriptome.gdc_realn.bam 12215688496 BAM transcriptome harmonized CPTAC3 31f33ed3-490e-4402-95be-bbdae7e33d27 6c23ebc127a8ab4f0010e0ede36c40e3 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor"} -C3N-03204.WGS.N C3N-03204 LSCC WGS blood_normal CPT0209550002 CPT0209550002.WholeGenome.RP-1303.bam 57086367827 BAM aligned CPTAC3 4b39c604-73cb-44f6-80cd-ecd8d0501001 3b9b9d19eb56abce5844796b9d643e4e {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal"} -C3N-03204.WGS.N.hg38 C3N-03204 LSCC WGS blood_normal CPT0209550002 0ea1f237-cdc6-4d6c-a4a1-15caadce1ebc_wgs_gdc_realn.bam 82872893991 BAM harmonized CPTAC3 c8f12894-0bb9-41a9-a7a6-55661f980c0f 0611f7e03015f3b4981164125699e856 {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal"} -C3N-03204.WGS.T C3N-03204 LSCC WGS tumor CPT0209490006 CPT0209490006.WholeGenome.RP-1303.bam 120316956613 BAM aligned CPTAC3 31b7f24d-2630-40ac-ac09-110682c29291 54646e359a61197ed57e2b8739d7f2e5 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor"} -C3N-03204.WGS.T.hg38 C3N-03204 LSCC WGS tumor CPT0209490006 eb7cddfe-2246-4542-8756-06d1b3f872d6_wgs_gdc_realn.bam 174943381681 BAM harmonized CPTAC3 0d044a36-d468-4cf1-a198-790afa364cc7 302e9247eb5d505cd54ec448f435a19a {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor"} -C3N-03204.WXS.A C3N-03204 LSCC WXS tissue_normal CPT0209510006 CPT0209510006.WholeExome.RP-1303.bam 24716426083 BAM aligned CPTAC3 7ee27d2a-71b5-4513-b44d-b02703c9b4a3 1cf440dcfbe5b82a110db543a0628463 {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.WXS.A.hg38 C3N-03204 LSCC WXS tissue_normal CPT0209510006 5b8df5f2-b6db-45e3-beee-94782533f59e_wxs_gdc_realn.bam 33943140423 BAM harmonized CPTAC3 228a1c4f-43c0-4917-a17e-459809f6882c 9a05ea8bdc834f864d53c588e349d200 {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03204.WXS.N C3N-03204 LSCC WXS blood_normal CPT0209550002 CPT0209550002.WholeExome.RP-1303.bam 27538436377 BAM aligned CPTAC3 32d07935-5278-438d-b136-d14da1beb89b d8496ba9f5b262317d030fe23110c3ee {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal"} -C3N-03204.WXS.N.hg38 C3N-03204 LSCC WXS blood_normal CPT0209550002 0ea1f237-cdc6-4d6c-a4a1-15caadce1ebc_wxs_gdc_realn.bam 37582249744 BAM harmonized CPTAC3 5c27e5f1-f18c-46f2-9e75-6b8000d93a64 d65cf9ecece65f4b678a4d433c8c534e {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal"} -C3N-03204.WXS.T C3N-03204 LSCC WXS tumor CPT0209490006 CPT0209490006.WholeExome.RP-1303.bam 26555549522 BAM aligned CPTAC3 3aafeec3-540e-40fe-affc-7ab9ba00111f 68ebd152be2862e0f5ee2acac9c23d17 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor"} -C3N-03204.WXS.T.hg38 C3N-03204 LSCC WXS tumor CPT0209490006 eb7cddfe-2246-4542-8756-06d1b3f872d6_wxs_gdc_realn.bam 37415167175 BAM harmonized CPTAC3 a885a5c9-fa4d-4b2e-9dd9-a4316afc8e7f a18ed97249371830447a274e71352a74 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor"} -C3N-03205.MethArray.Green.A C3N-03205 LUAD Methylation_Array tissue_normal CPT0185110006 203219670180_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 e263981a-c523-4d0c-aef7-eae77f7b6841 5f0ee98335e1a686f20750817993756b {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.MethArray.Green.T C3N-03205 LUAD Methylation_Array tumor CPT0185090006 203220070082_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 67cfcc1d-50af-45d6-988f-987f7cec2559 ae66d2fc8e781981d6f249d473b23ea5 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor"} -C3N-03205.MethArray.Red.A C3N-03205 LUAD Methylation_Array tissue_normal CPT0185110006 203219670180_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 be354aa8-ba91-4a8b-bb96-8a8d2a159004 11278483e797c1bc3a3b48de8513d048 {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.MethArray.Red.T C3N-03205 LUAD Methylation_Array tumor CPT0185090006 203220070082_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 6afcb3c8-6665-48ff-8ba6-4ea1306d7449 b69bf41cadabe57c5790130bfbaf6322 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor"} -C3N-03205.miRNA-Seq.A.hg38 C3N-03205 LUAD miRNA-Seq tissue_normal CPT0185110009 5d3be101-31c2-4409-b087-afec8fb3951b_mirnaseq_gdc_realn.bam 363524209 BAM harmonized CPTAC3 e90d8440-0d81-4dad-83dd-6f63c66dc7ea 1c33fd2e1fbae632988e233fd15bad29 {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.miRNA-Seq.S46_L007_R1.T C3N-03205 LUAD miRNA-Seq tumor CPT0185090009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L007_R1_001.unaln.bam 276816917 BAM S46_L007_R1 unaligned CPTAC3 e0e97964-6c85-4166-b231-982b96281da4 7f66489c8a08a9c7ebd0f2413d6e9f97 {"aliquot_tag": "ALQ_faada549", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03205.miRNA-Seq.S7_L006_R1.A C3N-03205 LUAD miRNA-Seq tissue_normal CPT0185110009 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L006_R1_001.unaln.bam 328204437 BAM S7_L006_R1 unaligned CPTAC3 a058e3da-cee8-4a7f-9c8b-d60bd01e0a1d 72bc9d71edab9e9dbaa528d80242fbe1 {"aliquot_tag": "ALQ_1813d2d", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.miRNA-Seq.T.hg38 C3N-03205 LUAD miRNA-Seq tumor CPT0185090009 96a4d324-d8c0-4890-afbc-0660d9fc65d0_mirnaseq_gdc_realn.bam 303447320 BAM harmonized CPTAC3 b460e2c8-e933-4a47-b29c-383a1029cc35 f46d322b544ada12646d418f6af6cee7 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor"} -C3N-03205.RNA-Seq.chimeric.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.chimeric.gdc_realn.bam 49680713 BAM chimeric harmonized CPTAC3 9222be3b-8d8a-4428-a6cd-2d1d0faec7c7 29a032932afc8089e5ce1c3728876e0e {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.RNA-Seq.chimeric.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.chimeric.gdc_realn.bam 53683644 BAM chimeric harmonized CPTAC3 b7d0cf5a-b91a-4c7e-880a-f1a4aa277008 83de1bf28b4d2b58fe6a99a79b6d6191 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor"} -C3N-03205.RNA-Seq.genomic.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.genomic.gdc_realn.bam 9399058888 BAM genomic harmonized CPTAC3 f9e2b0fe-9679-43cc-9173-ef84211796cf ff2be1a7acfe5e17f0001adef51c4b0d {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.RNA-Seq.genomic.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.genomic.gdc_realn.bam 9084646275 BAM genomic harmonized CPTAC3 872032ca-1ea6-47d3-bfda-0e27f075346b ea6023a6bd27f534bbd82338fc0b2dc2 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor"} -C3N-03205.RNA-Seq.S11_L003_R1.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4175361887 FASTQ S11_L003_R1 unaligned CPTAC3 43b0ebd2-bca9-4192-b868-28e2c828fc8c c4361793f6dbf151d272d3a7ff4bc079 {"aliquot_tag": "ALQ_1813d2d", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.RNA-Seq.S11_L003_R2.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4676252143 FASTQ S11_L003_R2 unaligned CPTAC3 a38ce374-5eca-4b8a-866f-a5a0e590a169 60531edb6b258edf79db3497ba7a15fe {"aliquot_tag": "ALQ_1813d2d", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.RNA-Seq.S18_L005_R1.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 4206041848 FASTQ S18_L005_R1 unaligned CPTAC3 fd859ae0-a877-493d-b6c1-4eb9eeb1d491 404a8764fb2b41c1e249d3bff61c5aa4 {"aliquot_tag": "ALQ_faada549", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03205.RNA-Seq.S18_L005_R2.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4582864920 FASTQ S18_L005_R2 unaligned CPTAC3 41635ab5-5d6f-4ac9-b20b-74107d9062b5 85d7bd68ae7fbdf1bde13d65e673becd {"aliquot_tag": "ALQ_faada549", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03205.RNA-Seq.transcriptome.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.transcriptome.gdc_realn.bam 9882832390 BAM transcriptome harmonized CPTAC3 41379734-6383-40d0-beb3-ce7e8ad2f577 7bd0a7d94dc548193155a671faab183b {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.RNA-Seq.transcriptome.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.transcriptome.gdc_realn.bam 10876995331 BAM transcriptome harmonized CPTAC3 2fa0fe6f-c642-43b8-b6a3-17301a20482e d9f73432bc8d5e047cf23d382e0de755 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor"} -C3N-03205.WGS.N C3N-03205 LUAD WGS blood_normal CPT0185150002 CPT0185150002.WholeGenome.RP-1303.bam 108528834101 BAM aligned CPTAC3 9b8755ce-f53e-4dc1-aca8-cd268f1d7dea 3912d0f2bae9368cf1021e05773bfdfd {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal"} -C3N-03205.WGS.N.hg38 C3N-03205 LUAD WGS blood_normal CPT0185150002 d7bd333c-9f0c-4452-9d22-21e5bf68b70b_wgs_gdc_realn.bam 156231455930 BAM harmonized CPTAC3 65e7d4fb-79c2-48bd-be83-b39a7b2c2c97 ab13a57a128ba9a7f2f9ee31e0f810b1 {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal"} -C3N-03205.WGS.T C3N-03205 LUAD WGS tumor CPT0185090006 CPT0185090006.WholeGenome.RP-1303.bam 122312535120 BAM aligned CPTAC3 732f80c9-520c-43f1-9995-bacdbedf2e36 42349f519cf1d2adf66e89a43f594bcf {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor"} -C3N-03205.WGS.T.hg38 C3N-03205 LUAD WGS tumor CPT0185090006 13f1a500-dd71-4071-8a70-c4f72f4a6a29_wgs_gdc_realn.bam 176864868577 BAM harmonized CPTAC3 453b3310-20f3-477b-bda2-f05feb6e41c0 782770618e61e58d2823d23c2851c77a {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor"} -C3N-03205.WXS.A C3N-03205 LUAD WXS tissue_normal CPT0185110006 CPT0185110006.WholeExome.RP-1303.bam 16243347082 BAM aligned CPTAC3 4eb57993-14a6-4c3a-bf55-db3eb29d7d4c 4327826ace260418f82858f194a0f2fe {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.WXS.A.hg38 C3N-03205 LUAD WXS tissue_normal CPT0185110006 c0b104af-2c2d-4d86-b331-c80452577820_wxs_gdc_realn.bam 22664947568 BAM harmonized CPTAC3 53986e95-e3ee-42ce-a61a-8c876f801830 ad795ec4284f912bd70582968750e7ae {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03205.WXS.N C3N-03205 LUAD WXS blood_normal CPT0185150002 CPT0185150002.WholeExome.RP-1303.bam 23502621043 BAM aligned CPTAC3 6d1bac35-c865-4b37-83c9-20baa6234a8c 3cbc10d614af818579cc6d0580beaabc {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal"} -C3N-03205.WXS.N.hg38 C3N-03205 LUAD WXS blood_normal CPT0185150002 d7bd333c-9f0c-4452-9d22-21e5bf68b70b_wxs_gdc_realn.bam 32249173818 BAM harmonized CPTAC3 bdc1a23c-bc0c-4590-99e9-d5a2a08ee508 89dfe80a1c0fde2adf029d65c0e0381c {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal"} -C3N-03205.WXS.T C3N-03205 LUAD WXS tumor CPT0185090006 CPT0185090006.WholeExome.RP-1303.bam 23214753523 BAM aligned CPTAC3 79bb21ae-e472-41a5-abad-e4dfbdeec994 444c49c86f06bff8d0d4e7610f300af3 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor"} -C3N-03205.WXS.T.hg38 C3N-03205 LUAD WXS tumor CPT0185090006 13f1a500-dd71-4071-8a70-c4f72f4a6a29_wxs_gdc_realn.bam 32202721264 BAM harmonized CPTAC3 802c0448-7252-4a8d-b47b-1bf6f0f3d72e fa98db2bcf9e310c26ac0ad33ab90862 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor"} -C3N-03210.MethArray.Green.A C3N-03210 LUAD Methylation_Array tissue_normal CPT0185180006 203561620077_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 7ac7c765-496c-4aed-8c69-21831a2ed41f b6fcce9ba4ee601a9493c692baf04a3a {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.MethArray.Green.T C3N-03210 LUAD Methylation_Array tumor CPT0185170006 203561450014_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 269b2d66-ac64-440f-b955-db268ac61fc9 708a131f38794b392c6182832a117240 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor"} -C3N-03210.MethArray.Red.A C3N-03210 LUAD Methylation_Array tissue_normal CPT0185180006 203561620077_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 207333b2-f117-4555-8cfb-9536d3a04572 0396a67b62381a4915f73d6ba9da9eb7 {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.MethArray.Red.T C3N-03210 LUAD Methylation_Array tumor CPT0185170006 203561450014_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 c160aa45-25fd-44fa-a3e0-9ae638f05509 fccf4127872298abb1fe17059ab641a4 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor"} -C3N-03210.miRNA-Seq.A.hg38 C3N-03210 LUAD miRNA-Seq tissue_normal CPT0185180009 cc1bc389-f542-46f4-8c62-f6522aa084b4_mirnaseq_gdc_realn.bam 235466337 BAM harmonized CPTAC3 a79631da-2ba3-4c54-8ceb-48a36f31bd5d 2812506ab97df7368368fade42712b58 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.miRNA-Seq.S20_L005_R1.T C3N-03210 LUAD miRNA-Seq tumor CPT0185170009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGTAGC_S20_L005_R1_001.unaln.bam 174209740 BAM S20_L005_R1 unaligned CPTAC3 5a9816d4-1959-42e8-abb1-326b3a89f7e6 b75205c5e9ea299c9a17744ee1991836 {"aliquot_tag": "ALQ_8ec1c88d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03210.miRNA-Seq.S35_L007_R1.A C3N-03210 LUAD miRNA-Seq tissue_normal CPT0185180009 190712_UNC32-K00270_0192_BH7HL3BBXY_CTTGTA_S35_L007_R1_001.unaln.bam 202080942 BAM S35_L007_R1 unaligned CPTAC3 c93dc71b-ea35-40ed-90e3-94a1ea94e8cb 1badceda601cec1fbc71594d5dd9e1c2 {"aliquot_tag": "ALQ_c915f5c", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.miRNA-Seq.T.hg38 C3N-03210 LUAD miRNA-Seq tumor CPT0185170009 90366784-4620-410c-b4eb-a3f6a9f36673_mirnaseq_gdc_realn.bam 194023045 BAM harmonized CPTAC3 19736ca2-b4f8-49bc-a9fe-b96a627f6ca3 34dbae602646837d32f5c6c3c4309a5d {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor"} -C3N-03210.RNA-Seq.chimeric.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.chimeric.gdc_realn.bam 68494430 BAM chimeric harmonized CPTAC3 b817a199-6a32-412d-85f3-975a1558db19 f0731bf82142b229348eeda9a7306094 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.RNA-Seq.chimeric.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.chimeric.gdc_realn.bam 46467576 BAM chimeric harmonized CPTAC3 4a6c8f28-ddd3-4fb8-9dd2-8b265bd0837d 4bc83dfe78b801ae47594e3bff37ad13 {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor"} -C3N-03210.RNA-Seq.genomic.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.genomic.gdc_realn.bam 10686766694 BAM genomic harmonized CPTAC3 49d0523e-3529-476c-a43e-3abb76f26c30 ecad6df05e2b5ea33849b5247c495bb8 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.RNA-Seq.genomic.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.genomic.gdc_realn.bam 13161415704 BAM genomic harmonized CPTAC3 aa754e98-96f5-48b6-9a71-0d0cf5f8475a b168e64172ccb51dfbe562ef187eacf9 {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor"} -C3N-03210.RNA-Seq.S23_L006_R1.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R1_001.fastq.gz 4826334971 FASTQ S23_L006_R1 unaligned CPTAC3 7a53c7bd-25d4-456f-868e-9a7406df1656 df3ac7dc957ebd7549e9b0ea0ad9abdc {"aliquot_tag": "ALQ_c915f5c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.RNA-Seq.S23_L006_R2.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R2_001.fastq.gz 4985608615 FASTQ S23_L006_R2 unaligned CPTAC3 a851467b-e5c4-4a41-8462-5f9567e7a3e4 f4de378055892e0ac33b1447f0e16ad1 {"aliquot_tag": "ALQ_c915f5c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.RNA-Seq.S4_L001_R1.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R1_001.fastq.gz 4455352989 FASTQ S4_L001_R1 unaligned CPTAC3 b3fcb1e2-deb3-4705-898a-b803f70309ac a00ecc08fb041db6320efbd2586e1f58 {"aliquot_tag": "ALQ_8ec1c88d", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03210.RNA-Seq.S4_L001_R2.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R2_001.fastq.gz 5116449263 FASTQ S4_L001_R2 unaligned CPTAC3 a02fcc2e-4533-47e9-8c30-831d8aba8439 a83ad11c968e057dc9aba32f8b544660 {"aliquot_tag": "ALQ_8ec1c88d", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03210.RNA-Seq.transcriptome.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.transcriptome.gdc_realn.bam 11743420705 BAM transcriptome harmonized CPTAC3 4b70be4d-20ee-4a18-be16-cc97310388aa 9ea58b3c858409c7c5de3204edcc5e10 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.RNA-Seq.transcriptome.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.transcriptome.gdc_realn.bam 10140439306 BAM transcriptome harmonized CPTAC3 d2ee4007-25ac-44e9-b555-b192c897068c 6f69b8f4549c5b27699f9b54809d06ed {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor"} -C3N-03210.WGS.N C3N-03210 LUAD WGS blood_normal CPT0185220002 CPT0185220002.WholeGenome.RP-1303.bam 71731958410 BAM aligned CPTAC3 9b8c993c-fbab-4b5d-8268-a7ffc56bdcc8 24167b2c8c3cf3ed13e7cdc5f0eece12 {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03210.WGS.N.hg38 C3N-03210 LUAD WGS blood_normal CPT0185220002 dd92c831-83c8-43a7-a2ae-6096acc30f44_wgs_gdc_realn.bam 105128649484 BAM harmonized CPTAC3 93a3331f-17c6-41a1-835d-e7e096c82f05 b04709ef90bcdf1229abc001b7fc6f13 {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03210.WGS.T C3N-03210 LUAD WGS tumor CPT0185170006 CPT0185170006.WholeGenome.RP-1303.bam 61421911127 BAM aligned CPTAC3 483a1d99-f850-42e7-8cba-2ff7b6a3895d 02f80a2839949bb59d5a893ea62d10d3 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor"} -C3N-03210.WGS.T.hg38 C3N-03210 LUAD WGS tumor CPT0185170006 4226ee89-6060-4c36-b114-d5f8cbf2fcfa_wgs_gdc_realn.bam 91490334584 BAM harmonized CPTAC3 9db89804-cbd4-4008-88f9-489a274bc5a4 b92b3c0f9c363f462f3b6fcefa64119a {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor"} -C3N-03210.WXS.A C3N-03210 LUAD WXS tissue_normal CPT0185180006 CPT0185180006.WholeExome.RP-1303.bam 22140229622 BAM aligned CPTAC3 c2cbcc35-1b02-4fa0-b262-e03b0d133b04 fd504a1c93ce9f7b4fa7615442dfbb9f {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.WXS.A.hg38 C3N-03210 LUAD WXS tissue_normal CPT0185180006 7e224af8-7d5e-43bb-8a36-23f61a15d9e9_wxs_gdc_realn.bam 31081173446 BAM harmonized CPTAC3 577f2e1d-6700-4960-ad07-3466b4133f38 2c9abf216c1186de56c510ef18b33b32 {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03210.WXS.N C3N-03210 LUAD WXS blood_normal CPT0185220002 CPT0185220002.WholeExome.RP-1303.bam 28088940040 BAM aligned CPTAC3 6ddb6edf-cd5c-4a6a-b27c-c292c572cd47 ee36c623fe0eed874832db5ceb6eeaee {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03210.WXS.N.hg38 C3N-03210 LUAD WXS blood_normal CPT0185220002 dd92c831-83c8-43a7-a2ae-6096acc30f44_wxs_gdc_realn.bam 37971318477 BAM harmonized CPTAC3 b2496f08-0280-45f9-a5b7-684b41072279 ca5b2952d16228def80ba056bf94bcf2 {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03210.WXS.T C3N-03210 LUAD WXS tumor CPT0185170006 CPT0185170006.WholeExome.RP-1303.bam 18796752076 BAM aligned CPTAC3 3c76e8ad-8ac0-448f-89d3-ad2db319292a 7dd611a3103426a5dc694bc6080bab97 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor"} -C3N-03210.WXS.T.hg38 C3N-03210 LUAD WXS tumor CPT0185170006 4226ee89-6060-4c36-b114-d5f8cbf2fcfa_wxs_gdc_realn.bam 25647146917 BAM harmonized CPTAC3 19ad1fb8-596d-43fa-8cc4-3a1b24cbd303 4ad503083956a54c9db4027764fafef4 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor"} -C3N-03211.MethArray.Green.A C3N-03211 PDA Methylation_Array tissue_normal CPT0209650007 203561620086_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a0845b75-20c9-4d2e-ae27-be47563f365c 0ba24c8bd2108dee894e066ceedfaeb0 {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03211.MethArray.Green.T C3N-03211 PDA Methylation_Array tumor CPT0209640008 203561450073_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d3ad3b3e-68f6-43ce-9091-62d8e5f92f0f 2a051d007977f5659f2c5ac0c6fcc9b9 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor"} -C3N-03211.MethArray.Red.A C3N-03211 PDA Methylation_Array tissue_normal CPT0209650007 203561620086_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a0c4bb4d-f8a2-47cb-8f9a-82d26944932e f57de6321667bc88b043132a2730d511 {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03211.MethArray.Red.T C3N-03211 PDA Methylation_Array tumor CPT0209640008 203561450073_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 ab6f327f-d9e5-456d-b7a9-91a4ef6bafc7 55ba8155808671ecee898e3962cfd896 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor"} -C3N-03211.miRNA-Seq.S30_L004_R1.T C3N-03211 PDA miRNA-Seq tumor CPT0209640011 190813_UNC32-K00270_0196_AH5MCWBBXY_ATCACG_S30_L004_R1_001.unaln.bam 174449374 BAM S30_L004_R1 unaligned CPTAC3 2dc8da72-4ee2-43ac-b0fd-d32210479b31 eb93caa88ba103d4c85167fbf551b112 {"aliquot_tag": "ALQ_ee6c7692", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03211.miRNA-Seq.T.hg38 C3N-03211 PDA miRNA-Seq tumor CPT0209640011 3be3f8d3-4a87-4406-8b32-342ac6aa234a_mirnaseq_gdc_realn.bam 202061520 BAM harmonized CPTAC3 3f5d769b-652c-464d-b488-95ae2b69227c bc0885d388bdfdc6d0fc233367b9f206 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor"} -C3N-03211.RNA-Seq.chimeric.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.chimeric.gdc_realn.bam 173925371 BAM chimeric harmonized CPTAC3 87090459-9a51-4c27-bf5c-1476a4f05bec 2f31d5e5b1e9b1a447c1d7fe89abfe86 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor"} -C3N-03211.RNA-Seq.genomic.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.genomic.gdc_realn.bam 11866304330 BAM genomic harmonized CPTAC3 830e97c2-6202-434d-ae24-652e328e9783 5bcc7e3acfbd4166f2902293d6c510b6 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor"} -C3N-03211.RNA-Seq.S31_L008_R1.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4364728335 FASTQ S31_L008_R1 unaligned CPTAC3 94e12957-beef-4ee5-8b65-012c89f8d49e 946114bb920762c5edb030da8e3af952 {"aliquot_tag": "ALQ_ee6c7692", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03211.RNA-Seq.S31_L008_R2.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 4563789886 FASTQ S31_L008_R2 unaligned CPTAC3 7de4094f-10c7-4de4-987f-6c73577e720f 8d1dce54de2f392602b6dac38d91c58c {"aliquot_tag": "ALQ_ee6c7692", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03211.RNA-Seq.transcriptome.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.transcriptome.gdc_realn.bam 9934075596 BAM transcriptome harmonized CPTAC3 50a6a125-3307-49ef-a747-ff4c6fc90dc0 2290179f6eac71a74c15de877b5df144 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor"} -C3N-03211.WGS.N C3N-03211 PDA WGS blood_normal CPT0209690002 CPT0209690002.WholeGenome.RP-1303.bam 64317613401 BAM aligned CPTAC3 b67e70c3-b014-4e38-8939-4f9c63dde2eb 792aa4e86153ca830993123d11540a1c {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03211.WGS.N.hg38 C3N-03211 PDA WGS blood_normal CPT0209690002 e989c046-a885-4bfd-a2a5-666bd6577e3a_wgs_gdc_realn.bam 94566685096 BAM harmonized CPTAC3 3ecf3417-d869-4012-aa60-e0b8e73f745a c93c362a9b1fd02e076d2731179107e9 {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03211.WGS.T C3N-03211 PDA WGS tumor CPT0209640008 CPT0209640008.WholeGenome.RP-1303.bam 116324530054 BAM aligned CPTAC3 fbf7bff9-fb5a-479d-88bc-e4e3beaaaede e7a7b2f939863aec4ea9a55715cb7705 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor"} -C3N-03211.WGS.T.hg38 C3N-03211 PDA WGS tumor CPT0209640008 906acd1b-9eb9-48bd-9545-ca45325aef9c_wgs_gdc_realn.bam 168925460812 BAM harmonized CPTAC3 b8b9e4db-c52e-4bd5-9df8-f6a761b7d127 64c530fa99b29d28230a95a7a51f4284 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor"} -C3N-03211.WXS.A C3N-03211 PDA WXS tissue_normal CPT0209650007 CPT0209650007.WholeExome.RP-1303.bam 20668553768 BAM aligned CPTAC3 33206eb0-f27d-436f-9ef7-a035fae18b6b d7935c589965144ae89b7740faf98271 {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03211.WXS.A.hg38 C3N-03211 PDA WXS tissue_normal CPT0209650007 53a48386-445c-45a7-b3bc-71c093a4e867_wxs_gdc_realn.bam 28572374124 BAM harmonized CPTAC3 c00e4521-eafe-405f-bbec-1e4d29f5fc50 92080c5924cc6063f65359dfb69d0c0b {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03211.WXS.N C3N-03211 PDA WXS blood_normal CPT0209690002 CPT0209690002.WholeExome.RP-1303.bam 29659973914 BAM aligned CPTAC3 ebb0b6d5-d487-4fe1-a7e1-d9151537699e d141de4c345a5bb55216b09fdb768e2d {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03211.WXS.N.hg38 C3N-03211 PDA WXS blood_normal CPT0209690002 e989c046-a885-4bfd-a2a5-666bd6577e3a_wxs_gdc_realn.bam 41309290103 BAM harmonized CPTAC3 e07abafe-6426-498c-8e5a-77e12b305e46 606eccbcc8f59cf603f16bb674ea800a {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03211.WXS.T C3N-03211 PDA WXS tumor CPT0209640008 CPT0209640008.WholeExome.RP-1303.bam 46556819364 BAM aligned CPTAC3 e28a9f25-4482-4ba9-966d-21e298a06a4a dbaa8c74acd8af9b4cafe093827373ff {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor"} -C3N-03211.WXS.T.hg38 C3N-03211 PDA WXS tumor CPT0209640008 906acd1b-9eb9-48bd-9545-ca45325aef9c_wxs_gdc_realn.bam 64211975234 BAM harmonized CPTAC3 70e608bd-1d1e-46dc-87e2-6a50d7b83fc6 0a8a2c2d786eb9a9cb223c5523c59573 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor"} -C3N-03212.MethArray.Green.T C3N-03212 LUAD Methylation_Array tumor CPT0185230006 203219650065_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc771166-a79d-4ccf-aaea-5a68cea9d3c4 eada4f2472dd1056a73fba53efe72ca3 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor"} -C3N-03212.MethArray.Red.T C3N-03212 LUAD Methylation_Array tumor CPT0185230006 203219650065_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 daadd5f5-af27-48ad-be24-8fd28583de05 0421fdffd64722993509bf9fa3d16230 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor"} -C3N-03212.miRNA-Seq.A.hg38 C3N-03212 LUAD miRNA-Seq tissue_normal CPT0185250009 db99eab2-213a-4586-a1ba-3a05edc7f49f_mirnaseq_gdc_realn.bam 264438696 BAM harmonized CPTAC3 4628a2e3-fb83-4c66-a123-0587be468c85 9ed19588317ec2f9380e63833ca824e8 {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.miRNA-Seq.S47_L007_R1.T C3N-03212 LUAD miRNA-Seq tumor CPT0185230009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGAAG_S47_L007_R1_001.unaln.bam 194942531 BAM S47_L007_R1 unaligned CPTAC3 e21c0681-2c7c-4a7e-b717-c0a21a6b1470 06d22a0cb561bb52bf591d8e132f3518 {"aliquot_tag": "ALQ_fdd51ce3", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03212.miRNA-Seq.S8_L006_R1.A C3N-03212 LUAD miRNA-Seq tissue_normal CPT0185250009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L006_R1_001.unaln.bam 240170281 BAM S8_L006_R1 unaligned CPTAC3 9820e112-5fe5-41bc-afb5-3d51901006e4 a4e7101b09222127e3eaf6ad02cb5d64 {"aliquot_tag": "ALQ_7295e943", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.miRNA-Seq.T.hg38 C3N-03212 LUAD miRNA-Seq tumor CPT0185230009 11132687-690f-4240-9579-f9c024a0242e_mirnaseq_gdc_realn.bam 215491168 BAM harmonized CPTAC3 7016cd99-edba-4def-a725-d8dc1666d8c4 bcbb72675dfaf2ee5815b4aaa83ab8ba {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor"} -C3N-03212.RNA-Seq.chimeric.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.chimeric.gdc_realn.bam 86300962 BAM chimeric harmonized CPTAC3 e450a75b-db64-4cd1-b9ce-7a01a1e91007 31945eacff537d70f717cbe9ea70a1cf {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.RNA-Seq.chimeric.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.chimeric.gdc_realn.bam 67326607 BAM chimeric harmonized CPTAC3 270caa2f-994b-49cf-b422-5cd9dece0516 c054bb9d90f325387caa6e841b37702b {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor"} -C3N-03212.RNA-Seq.genomic.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.genomic.gdc_realn.bam 10961070390 BAM genomic harmonized CPTAC3 908e207a-0689-453a-9f37-993625c2e43f 6d2cad5465c44f8ac838fe5fcd414528 {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.RNA-Seq.genomic.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.genomic.gdc_realn.bam 10506039541 BAM genomic harmonized CPTAC3 db1948c7-5fea-414b-9a6b-9c7256a31a01 8dc28f858a1985efd07165c5aa3ab8c3 {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor"} -C3N-03212.RNA-Seq.S10_L003_R1.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R1_001.fastq.gz 5029004974 FASTQ S10_L003_R1 unaligned CPTAC3 442830a1-16e0-4a52-9c30-c8b9e06e4756 be12b8d82b31de91925c514db12fd752 {"aliquot_tag": "ALQ_7295e943", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.RNA-Seq.S10_L003_R2.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5648598919 FASTQ S10_L003_R2 unaligned CPTAC3 1fe294c0-dc14-452b-8d9d-2df13b28c230 c15bb2379c8c8ebb18412b8fa3fdb3fd {"aliquot_tag": "ALQ_7295e943", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.RNA-Seq.S17_L005_R1.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4969583207 FASTQ S17_L005_R1 unaligned CPTAC3 ce93bb1f-bb32-4346-8bb8-e8f8354a3f98 46335f8df39a73e0e269712f1cafe48c {"aliquot_tag": "ALQ_fdd51ce3", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03212.RNA-Seq.S17_L005_R2.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5320519602 FASTQ S17_L005_R2 unaligned CPTAC3 f06ed433-6d34-4733-9e57-ecb3cd73e819 d3f60f20e7be87296e06582a0c404b90 {"aliquot_tag": "ALQ_fdd51ce3", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03212.RNA-Seq.transcriptome.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.transcriptome.gdc_realn.bam 13092771972 BAM transcriptome harmonized CPTAC3 aad3aedf-ad25-4d6c-b299-4b54e36e8fe1 c5589402f04ae816851b1b90f1397ab4 {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.RNA-Seq.transcriptome.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.transcriptome.gdc_realn.bam 11565219838 BAM transcriptome harmonized CPTAC3 bc7de4b2-7f8d-4793-bd94-0d761372a79b 4f69a031308fd5824d2665c94ced334d {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor"} -C3N-03212.WGS.A C3N-03212 LUAD WGS tissue_normal CPT0185250006 CPT0185250006.WholeGenome.RP-1303.bam 97920197583 BAM aligned CPTAC3 0a3e54a4-ea27-41a6-8013-e5cee8d8acfa 8cd7c81f8b90f8efb136b526b355cac4 {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.WGS.A.hg38 C3N-03212 LUAD WGS tissue_normal CPT0185250006 b0dcebe1-2a7c-4b57-9103-daa736375506_wgs_gdc_realn.bam 145543588512 BAM harmonized CPTAC3 39a27b02-690a-4dd3-9046-3ef5289189b2 86d8413524a4d4e071f08ca96ffd25b5 {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.WGS.N C3N-03212 LUAD WGS blood_normal CPT0185290002 CPT0185290002.WholeGenome.RP-1303.bam 103048902661 BAM aligned CPTAC3 6863aa6b-c1d9-4a49-a4d7-ed8308764ff5 e58b6ac1b87d3852cc34643bc51175e5 {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal"} -C3N-03212.WGS.N.hg38 C3N-03212 LUAD WGS blood_normal CPT0185290002 345b1b1e-842a-450c-9ba5-330000607de5_wgs_gdc_realn.bam 151256750575 BAM harmonized CPTAC3 30ba375a-36c8-4467-b2ac-8edc3f1b3f45 8d8caa16428af3487c69bf82094f6d9d {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal"} -C3N-03212.WGS.T C3N-03212 LUAD WGS tumor CPT0185230006 CPT0185230006.WholeGenome.RP-1303.bam 48618993974 BAM aligned CPTAC3 91524dbf-9aae-4f62-a2be-815e678bb64b cc46868d1cb5369b3efbdf688d159f96 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor"} -C3N-03212.WGS.T.hg38 C3N-03212 LUAD WGS tumor CPT0185230006 68e8f36d-9fed-40d3-9f22-aa5be283c459_wgs_gdc_realn.bam 72463911667 BAM harmonized CPTAC3 d883d758-5128-46d4-9b2a-ddc74edb88a4 27a44785c1158a6e1f8da01a5030bd7e {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor"} -C3N-03212.WXS.A C3N-03212 LUAD WXS tissue_normal CPT0185250006 CPT0185250006.WholeExome.RP-1303.bam 40965777209 BAM aligned CPTAC3 f84175ec-dcc8-4b14-ba15-88bc6caf3648 5ea8a7534fe63c428368a36a470d427d {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.WXS.A.hg38 C3N-03212 LUAD WXS tissue_normal CPT0185250006 b0dcebe1-2a7c-4b57-9103-daa736375506_wxs_gdc_realn.bam 55530901309 BAM harmonized CPTAC3 a545e444-3003-4673-807d-83006c8d7787 0af3468066cb443dae8df53838a7006b {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03212.WXS.N C3N-03212 LUAD WXS blood_normal CPT0185290002 CPT0185290002.WholeExome.RP-1303.bam 24774662966 BAM aligned CPTAC3 f1230b7c-78e7-40ca-8484-5c64c3f64f9c b00727ba367a877c8c6c458406b81ea6 {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal"} -C3N-03212.WXS.N.hg38 C3N-03212 LUAD WXS blood_normal CPT0185290002 345b1b1e-842a-450c-9ba5-330000607de5_wxs_gdc_realn.bam 33789158956 BAM harmonized CPTAC3 fa381013-5ff5-432a-b485-f3b98073ff91 7e830898ca81a895f2db6a8650b28c28 {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal"} -C3N-03212.WXS.T C3N-03212 LUAD WXS tumor CPT0185230006 CPT0185230006.WholeExome.RP-1303.bam 23296727217 BAM aligned CPTAC3 5d02d4c8-fec0-4171-992d-baea6ae91e2f cbbd76f84da165c7842c8b6c523d1fbc {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor"} -C3N-03212.WXS.T.hg38 C3N-03212 LUAD WXS tumor CPT0185230006 68e8f36d-9fed-40d3-9f22-aa5be283c459_wxs_gdc_realn.bam 32388803944 BAM harmonized CPTAC3 0580be19-2fd3-49ab-83c0-38ff4c8ac752 80dd2b30aefb29cf9d85cbc0e2bc7cd4 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor"} -C3N-03222.MethArray.Green.A C3N-03222 LUAD Methylation_Array tissue_normal CPT0179170005 203219640158_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e159bb9b-82fd-4aef-919a-decd1307b486 b38ccf51e72c611dcce2bc36543085c7 {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.MethArray.Green.T C3N-03222 LUAD Methylation_Array tumor CPT0179140006 203219640158_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b14f313f-af22-41ca-860a-5a3e1067e602 a7e90dbde17da2cea67af41887330a1b {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor"} -C3N-03222.MethArray.Red.A C3N-03222 LUAD Methylation_Array tissue_normal CPT0179170005 203219640158_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 e5974f4a-fe28-44ed-9974-c3c1d5a3e21a cfdf661039dc39276e0ef0593130ff0e {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.MethArray.Red.T C3N-03222 LUAD Methylation_Array tumor CPT0179140006 203219640158_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 322062c5-b7df-44c1-bfa7-cca0eca5e6b3 432bd015099b65c8b93e86d7be5b592a {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor"} -C3N-03222.miRNA-Seq.A.hg38 C3N-03222 LUAD miRNA-Seq tissue_normal CPT0179170008 4194ccd7-af0f-4764-9463-77617afe52f5_mirnaseq_gdc_realn.bam 252502803 BAM harmonized CPTAC3 77756e53-1545-49d3-aa1b-b1948d091b28 b8f41819b7ac6a914c560b3059e6201c {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.miRNA-Seq.S16_L008_R1.A C3N-03222 LUAD miRNA-Seq tissue_normal CPT0179170008 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGTCA_S16_L008_R1_001.unaln.bam 230379981 BAM S16_L008_R1 unaligned CPTAC3 42d085e5-d41d-41c8-b493-e96e993928fe f95b5ee5c81adb0dedc49523efd5cadc {"aliquot_tag": "ALQ_e74680c3", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.miRNA-Seq.S21_L006_R1.T C3N-03222 LUAD miRNA-Seq tumor CPT0179140009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L006_R1_001.unaln.bam 169827738 BAM S21_L006_R1 unaligned CPTAC3 df5be827-6274-4041-bf6a-fa57c19a9895 75567ae34b88cb9efb91c8b897582428 {"aliquot_tag": "ALQ_d7e1ca85", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03222.miRNA-Seq.T.hg38 C3N-03222 LUAD miRNA-Seq tumor CPT0179140009 2f23c7ea-134f-42fe-94ca-0ebe4475e531_mirnaseq_gdc_realn.bam 185070694 BAM harmonized CPTAC3 e7655853-2af8-4f0f-b0a3-dea71ddba454 2c8cf99e88d5d22fb2c3def09439b54f {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor"} -C3N-03222.RNA-Seq.chimeric.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.chimeric.gdc_realn.bam 319445876 BAM chimeric harmonized CPTAC3 786d5695-273d-48ce-8771-f4e4e60be4bc 602e867b622b3b375527a1094bea31a6 {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.RNA-Seq.chimeric.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.chimeric.gdc_realn.bam 47434448 BAM chimeric harmonized CPTAC3 c7853177-ab65-4d0d-9b6b-ee6740357edc be51aad60dae613202f26f5909a945f8 {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor"} -C3N-03222.RNA-Seq.genomic.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.genomic.gdc_realn.bam 6370148329 BAM genomic harmonized CPTAC3 a1152f62-9cda-431e-99bb-33e8e6ed538a 98a82b65f2c776ea27377abde3a57edf {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.RNA-Seq.genomic.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.genomic.gdc_realn.bam 8932097818 BAM genomic harmonized CPTAC3 1ac35540-2c5f-4e76-be58-cda0b958947a ec898847aa4827bc9362772f6dbe354b {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor"} -C3N-03222.RNA-Seq.S3_L006_R1.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R1_001.fastq.gz 3854407920 FASTQ S3_L006_R1 unaligned CPTAC3 c0834c76-fcc6-401f-9fac-37340fa7ff63 a9012b32ba1bf74fd04f837c6def6d1f {"aliquot_tag": "ALQ_d7e1ca85", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03222.RNA-Seq.S3_L006_R2.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R2_001.fastq.gz 4355889607 FASTQ S3_L006_R2 unaligned CPTAC3 53e83de2-1ceb-4d09-a74c-c9da4e976c19 27fd0b01025ae0706fe3d5773779b910 {"aliquot_tag": "ALQ_d7e1ca85", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03222.RNA-Seq.S6_L002_R1.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R1_001.fastq.gz 2835925840 FASTQ S6_L002_R1 unaligned CPTAC3 792f6b68-bda6-433f-8f65-8e4be86cf50c 252c749cddc4d85c03819f2b239a2564 {"aliquot_tag": "ALQ_e74680c3", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.RNA-Seq.S6_L002_R2.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R2_001.fastq.gz 3043831856 FASTQ S6_L002_R2 unaligned CPTAC3 29f0fe72-de72-4f11-8471-14b319c9702b 9cc8ef435aa0d6b94dd3f8e386cca77d {"aliquot_tag": "ALQ_e74680c3", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.RNA-Seq.transcriptome.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.transcriptome.gdc_realn.bam 7119253924 BAM transcriptome harmonized CPTAC3 7b6fac1c-f783-4486-8c20-d27047090f1b 58ccb9bdfbf26d1956e771a1141df723 {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.RNA-Seq.transcriptome.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.transcriptome.gdc_realn.bam 10345582557 BAM transcriptome harmonized CPTAC3 52820dfe-ac50-4e61-ba40-c3b52886ca8a 8f6641f09dec9dbf4d494d3e153dfc4a {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor"} -C3N-03222.WGS.N C3N-03222 LUAD WGS blood_normal CPT0179260002 CPT0179260002.WholeGenome.RP-1303.bam 108708819593 BAM aligned CPTAC3 af2a62c5-ebc9-49ee-9f32-9050163a79c3 15036f84af744a931627255f4ce4e0fb {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03222.WGS.N.hg38 C3N-03222 LUAD WGS blood_normal CPT0179260002 28e97771-3bef-407b-9870-47d5cfee49b4_wgs_gdc_realn.bam 159064453363 BAM harmonized CPTAC3 5eb9110a-e4da-47b3-ba6e-f3df28598241 fbdff5351c14a66f45fe29410831e9ad {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03222.WGS.T C3N-03222 LUAD WGS tumor CPT0179140006 CPT0179140006.WholeGenome.RP-1303.bam 113654482621 BAM aligned CPTAC3 dc3bdaa1-d595-4c5d-9806-ea84d32c0387 2111ac5be6e6e9f1bb5b7e1df8b2a6ce {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor"} -C3N-03222.WGS.T.hg38 C3N-03222 LUAD WGS tumor CPT0179140006 5af6b5ce-93f8-4a2a-8b20-1509cf2e82a7_wgs_gdc_realn.bam 163145483197 BAM harmonized CPTAC3 7f97f771-79a0-4c21-a257-87d3525d4c89 1e48b30f04a18462dde11e0a0f6ce45d {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor"} -C3N-03222.WXS.A C3N-03222 LUAD WXS tissue_normal CPT0179170005 CPT0179170005.WholeExome.RP-1303.bam 24317020605 BAM aligned CPTAC3 3e8a1ce1-ba0c-4cbf-a7bc-b8b0c00a23a4 0f5f479052a11faabe27cc64d9205f3d {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.WXS.A.hg38 C3N-03222 LUAD WXS tissue_normal CPT0179170005 cff1369c-ec1d-4341-b515-1fee5902f5d3_wxs_gdc_realn.bam 33479154982 BAM harmonized CPTAC3 62e97c3e-8bf2-4e25-b786-498e1b2c1f46 d408fca666750409e7f49b3312a29fe4 {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03222.WXS.N C3N-03222 LUAD WXS blood_normal CPT0179260002 CPT0179260002.WholeExome.RP-1303.bam 18893588933 BAM aligned CPTAC3 3f37d78e-bf6c-487a-9f4b-8568850c0aa3 397bf74fd4e8d3d602aad3f3b9dd60eb {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03222.WXS.N.hg38 C3N-03222 LUAD WXS blood_normal CPT0179260002 28e97771-3bef-407b-9870-47d5cfee49b4_wxs_gdc_realn.bam 26466676969 BAM harmonized CPTAC3 8aeaf54e-abc6-4689-9cb7-0858bbbd8436 902619168518d33becfc907f8688a2d0 {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03222.WXS.T C3N-03222 LUAD WXS tumor CPT0179140006 CPT0179140006.WholeExome.RP-1303.bam 20396682125 BAM aligned CPTAC3 f5a0c84a-3d44-492c-aefd-137070ffc5e1 c2da9093c6320904e3af77dc66bda4d9 {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor"} -C3N-03222.WXS.T.hg38 C3N-03222 LUAD WXS tumor CPT0179140006 5af6b5ce-93f8-4a2a-8b20-1509cf2e82a7_wxs_gdc_realn.bam 29004977899 BAM harmonized CPTAC3 3a8ccbe9-b074-413b-bea9-14bef415088a 0a20a8688984027d6e44458bec941e3c {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor"} -C3N-03225.MethArray.Green.A C3N-03225 LUAD Methylation_Array tissue_normal CPT0191600006 203561450073_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a4580af6-d4d7-49f8-bdaf-81f7a7d05b18 f23dcd7cd679aa59f6fcd19b6a332f29 {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03225.MethArray.Green.T C3N-03225 LUAD Methylation_Array tumor CPT0191570006 203561620095_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0373bffb-bda0-491e-bc67-cb21e33ee0b2 a0fd2eb9ba90259aeb9c9ec5a2b99d1f {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor"} -C3N-03225.MethArray.Red.A C3N-03225 LUAD Methylation_Array tissue_normal CPT0191600006 203561450073_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 8396c34e-d760-4b76-a76a-b19534f39015 bd8142a8800cbc36a4d742e1632678ca {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03225.MethArray.Red.T C3N-03225 LUAD Methylation_Array tumor CPT0191570006 203561620095_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 00f26457-1e61-4bed-bedc-787c3821d8fb 830f5afa5fe4fde5b950c83cdd9cd85f {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor"} -C3N-03225.miRNA-Seq.S46_L004_R1.T C3N-03225 LUAD miRNA-Seq tumor CPT0191570009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACCGG_S46_L004_R1_001.unaln.bam 203106095 BAM S46_L004_R1 unaligned CPTAC3 9b9d0d43-defc-4dcb-a903-8119e985df33 a915514b75ec605adc92854d2123624c {"aliquot_tag": "ALQ_2db5ae16", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03225.miRNA-Seq.T.hg38 C3N-03225 LUAD miRNA-Seq tumor CPT0191570009 d7bd3002-bb3d-48f5-9ea6-0167b9a632d6_mirnaseq_gdc_realn.bam 224384268 BAM harmonized CPTAC3 aa64caa5-ef95-4ed0-a973-6674cdf2ab3f 95aed854e548c0e2ce611be618f832a2 {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor"} -C3N-03225.RNA-Seq.chimeric.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.chimeric.gdc_realn.bam 47426715 BAM chimeric harmonized CPTAC3 12618c88-39ce-4e35-8a32-27e883c1a927 fe8c51a381b0912b099778806db6844b {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor"} -C3N-03225.RNA-Seq.genomic.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.genomic.gdc_realn.bam 10981323545 BAM genomic harmonized CPTAC3 63f346a1-4110-4787-a893-986528433509 6fe2a473dd1aecd4657d2fab302cd09b {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor"} -C3N-03225.RNA-Seq.S26_L007_R1.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R1_001.fastq.gz 4012128500 FASTQ S26_L007_R1 unaligned CPTAC3 c7ac4fd6-6579-4ff7-a7f4-0cf092ea97d1 fcd9cd0a8f784bd3eaa47f0a9178008e {"aliquot_tag": "ALQ_2db5ae16", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03225.RNA-Seq.S26_L007_R2.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R2_001.fastq.gz 4474190291 FASTQ S26_L007_R2 unaligned CPTAC3 f32ff77c-b1e3-41fe-9996-9bed1ed8742a 7979d6625dce1a7b608fb9e49d2b6b6e {"aliquot_tag": "ALQ_2db5ae16", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03225.RNA-Seq.transcriptome.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.transcriptome.gdc_realn.bam 8991275655 BAM transcriptome harmonized CPTAC3 98355be6-e599-4203-b0e3-8d87a2a9a66a 2292ee622b3c58e67f7e8c2d6b29e707 {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor"} -C3N-03225.WGS.N C3N-03225 LUAD WGS blood_normal CPT0193270002 CPT0193270002.WholeGenome.RP-1303.bam 78573255202 BAM aligned CPTAC3 c443432b-4168-4781-b03a-1bd87acba675 2e8071719ec5c4d92461f794d76a878c {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03225.WGS.N.hg38 C3N-03225 LUAD WGS blood_normal CPT0193270002 83e0ecc7-e856-40e6-abd9-f5bc5377442d_wgs_gdc_realn.bam 115388705849 BAM harmonized CPTAC3 ed9f5f70-e453-4995-b7de-5f2ac584207a 3108b23926863e0cbc22c2e78d3dce0d {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03225.WGS.T C3N-03225 LUAD WGS tumor CPT0191570006 CPT0191570006.WholeGenome.RP-1303.bam 65733495847 BAM aligned CPTAC3 1460c894-60c6-4cf7-a0ba-9541428e7e22 6ce24f3d68c3f99c1e4e697c01178978 {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor"} -C3N-03225.WGS.T.hg38 C3N-03225 LUAD WGS tumor CPT0191570006 650093fa-5d50-4a15-ad78-dcdb4b5398b7_wgs_gdc_realn.bam 95687723056 BAM harmonized CPTAC3 e8f6a9e7-87fe-4df8-aab8-a1e7cb90cf32 79632ad1cad18cf085da632800fedf12 {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor"} -C3N-03225.WXS.A C3N-03225 LUAD WXS tissue_normal CPT0191600006 CPT0191600006.WholeExome.RP-1303.bam 25542174916 BAM aligned CPTAC3 dc1103a1-262a-43ca-8900-3a6e100c2f22 d3dddb44b45b36f85a59ede9cf4ff782 {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03225.WXS.A.hg38 C3N-03225 LUAD WXS tissue_normal CPT0191600006 6cd01df9-7b3a-40d2-961e-6aa269cbd61a_wxs_gdc_realn.bam 35529965093 BAM harmonized CPTAC3 89103ad9-1937-4a63-b4cb-d0283029ab35 a699ef882c04dc973169e9d0fccd6834 {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03225.WXS.N C3N-03225 LUAD WXS blood_normal CPT0193270002 CPT0193270002.WholeExome.RP-1303.bam 26365503932 BAM aligned CPTAC3 d4449b83-5df8-4d5b-960c-9ac1187980f8 06d116bfcd9e13ebae329750ad1c8b78 {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03225.WXS.N.hg38 C3N-03225 LUAD WXS blood_normal CPT0193270002 83e0ecc7-e856-40e6-abd9-f5bc5377442d_wxs_gdc_realn.bam 36140649030 BAM harmonized CPTAC3 88df6125-801b-4982-89ea-857f39903b46 acfa9ea89fac52f9eb4eb0d379480598 {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03225.WXS.T C3N-03225 LUAD WXS tumor CPT0191570006 CPT0191570006.WholeExome.RP-1303.bam 20323311246 BAM aligned CPTAC3 d4910270-c741-4e92-9cca-ce2bb54fd9a0 5abcd13fe7120254458779928cccf1d1 {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor"} -C3N-03225.WXS.T.hg38 C3N-03225 LUAD WXS tumor CPT0191570006 650093fa-5d50-4a15-ad78-dcdb4b5398b7_wxs_gdc_realn.bam 27659947723 BAM harmonized CPTAC3 56d72469-a5b7-44dd-ba13-de7c0209738f d043d7ebd5cf38fe500a1dd8be60ad6e {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor"} -C3N-03226.MethArray.Green.A C3N-03226 HNSCC Methylation_Array tissue_normal CPT0194440009 203271750047_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 6e32b191-04f3-4d86-9ab7-0ef1c8072098 add952e65ed4bb1135b46aa801d45af0 {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.MethArray.Green.T C3N-03226 HNSCC Methylation_Array tumor CPT0194420009 203271750083_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a21ddfd2-10b8-45f0-969b-d49439d41cbe 4bb47be781c073d89051eb5619e7b91d {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor"} -C3N-03226.MethArray.Red.A C3N-03226 HNSCC Methylation_Array tissue_normal CPT0194440009 203271750047_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 d91daba2-da21-45ba-a590-d8d73e635304 45fa8ea5cbd776b2ecd8257a5536e727 {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.MethArray.Red.T C3N-03226 HNSCC Methylation_Array tumor CPT0194420009 203271750083_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 8b244ed6-2189-4c04-b5bc-4ac071c291b2 3fce7a38babfa349286a1588e20883d6 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor"} -C3N-03226.miRNA-Seq.A.hg38 C3N-03226 HNSCC miRNA-Seq tissue_normal CPT0194440006 945c3313-f2f1-4be4-bfeb-7f5700a30cc9_mirnaseq_gdc_realn.bam 306652734 BAM harmonized CPTAC3 4836eb0d-b844-4242-a38a-e6c523cfa92e f1b56a44c3f9b40efd7bcace4e7afd6e {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.miRNA-Seq.S20_L003_R1.A C3N-03226 HNSCC miRNA-Seq tissue_normal CPT0194440006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L003_R1_001.unaln.bam 268128599 BAM S20_L003_R1 unaligned CPTAC3 456aa026-2214-42a1-8143-e7736600bbc2 063df227bed1c430390d86230a446be0 {"aliquot_tag": "ALQ_63ce3555", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.miRNA-Seq.S9_L003_R1.T C3N-03226 HNSCC miRNA-Seq tumor CPT0194420013 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L003_R1_001.unaln.bam 198073258 BAM S9_L003_R1 unaligned CPTAC3 9b275683-76be-4ea5-a51d-e241b0694a22 f254be1a243eb72335a2b010c087e169 {"aliquot_tag": "ALQ_85ff053b", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03226.miRNA-Seq.T.hg38 C3N-03226 HNSCC miRNA-Seq tumor CPT0194420013 ffb76a0a-0389-40f3-91d2-f90311de734b_mirnaseq_gdc_realn.bam 223332790 BAM harmonized CPTAC3 bc1c46fd-6eaa-456c-909d-d0aa1721a4b7 c2c900d2073946110d63ad17d404e320 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.chimeric.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.chimeric.gdc_realn.bam 232497609 BAM chimeric harmonized CPTAC3 52a0de48-6258-4040-890c-c12f06c4fb55 7eb576ba2afc012c34d3d8a2cac40217 {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.chimeric.gdc_realn.bam 165316392 BAM chimeric harmonized CPTAC3 9e1ef9aa-dce3-4f5d-8735-9b39ac24c2e6 176de5cfb3f5f1e467b157554815a1a8 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.chimeric.gdc_realn.bam 27552740 BAM chimeric harmonized CPTAC3 e87ec417-cea2-43aa-98bd-1fe6d82f4a75 62693be15e53ba24a24847af10ef12ce {"aliquot_tag": "ALQ_9e71c2d7", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.chimeric.gdc_realn.bam 155378516 BAM chimeric harmonized CPTAC3 f45ea8c4-4ab1-44d3-8d1f-22c43d728f64 e83a6dc5a83b5b4e58ec29a9f000f8af {"aliquot_tag": "ALQ_707fa3fb", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.genomic.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.genomic.gdc_realn.bam 7364502693 BAM genomic harmonized CPTAC3 efd07ae7-5c16-40b3-81dc-c94c6a8f1b5c 75bcd03bc38a1e1fbc2d37a78704717b {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.genomic.gdc_realn.bam 8067981694 BAM genomic harmonized CPTAC3 42758160-3ad8-46fe-af42-3b3b8a6d5830 dfb6f07e98ba31ac00f061ed8a6ad1b2 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.genomic.gdc_realn.bam 11636148223 BAM genomic harmonized CPTAC3 f661b426-e37e-4819-9911-f29852fdf1cd 7b688c1c36c24efad4489a1d2db4350a {"aliquot_tag": "ALQ_9e71c2d7", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.genomic.gdc_realn.bam 7868796328 BAM genomic harmonized CPTAC3 0d537fcd-7694-4997-8307-dc086585ded0 6a128d2ba41eef56063bce2838f07e56 {"aliquot_tag": "ALQ_707fa3fb", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.S19_L005_R1.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R1_001.fastq.gz 3337682029 FASTQ S19_L005_R1 unaligned CPTAC3 4b11c02d-2d13-4ffe-a059-a46a13014c83 8f169bb34d7ee902f1214cfd10ad3530 {"aliquot_tag": "ALQ_63ce3555", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.RNA-Seq.S19_L005_R2.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R2_001.fastq.gz 3798138932 FASTQ S19_L005_R2 unaligned CPTAC3 596e4a21-29ea-47bc-acf9-65a113623de6 ec89cd533a6ad19cfe5339adadf972b3 {"aliquot_tag": "ALQ_63ce3555", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.RNA-Seq.S46_R1.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R1_001.fastq.gz 5112067959 FASTQ S46_R1 unaligned CPTAC3 6f752364-f87a-410a-8512-db763c674b86 1e241cf7f69b57f2aef8b95cef583ad8 {"aliquot_tag": "ALQ_9e71c2d7", "sample": "S46", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.S46_R2.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R2_001.fastq.gz 6309454142 FASTQ S46_R2 unaligned CPTAC3 3406a254-a751-47ab-9d61-aa21767cc1b9 0da84b011069310e0bd735f3151805d2 {"aliquot_tag": "ALQ_9e71c2d7", "sample": "S46", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.S5_L008_R1.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R1_001.fastq.gz 3751670872 FASTQ S5_L008_R1 unaligned CPTAC3 4decb474-0fad-43d5-afb4-cc2bfd005db0 2bb1cfadea0634ba032313fa80c1334f {"aliquot_tag": "ALQ_85ff053b", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.S5_L008_R2.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4236361947 FASTQ S5_L008_R2 unaligned CPTAC3 2041837d-d9c8-4926-82ba-1e45620b9459 16cd7f4bf86d479c46101edfdae2af59 {"aliquot_tag": "ALQ_85ff053b", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.S83_R1.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R1_001.fastq.gz 5781448110 FASTQ S83_R1 unaligned CPTAC3 76f9991e-87af-468f-b1fa-b2b274c8ae91 165e7f35bdd57b38e61c274871fcbf35 {"aliquot_tag": "ALQ_707fa3fb", "sample": "S83", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.S83_R2.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R2_001.fastq.gz 5971307518 FASTQ S83_R2 unaligned CPTAC3 16dc21a3-1cd9-412f-8728-96ae5855ffee 49b7f1b1643dba0a4091f74a5bc11422 {"aliquot_tag": "ALQ_707fa3fb", "sample": "S83", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.transcriptome.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.transcriptome.gdc_realn.bam 10217225460 BAM transcriptome harmonized CPTAC3 4f0cb60f-9f9f-4b25-9b24-9a6823ce62b4 c9286e90ae0d921570728f17ba53d627 {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.transcriptome.gdc_realn.bam 11970378937 BAM transcriptome harmonized CPTAC3 9854edd5-ced4-4a18-a063-83df8b3ffb56 92ee54c727246b9279b3ce06b13714b0 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.transcriptome.gdc_realn.bam 9495132097 BAM transcriptome harmonized CPTAC3 1c40fccf-bb01-4019-bf33-3b64d8e58c81 a913525e0897521caa1945bb3f1e7141 {"aliquot_tag": "ALQ_9e71c2d7", "gdc_sample_type": "Primary Tumor"} -C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.transcriptome.gdc_realn.bam 7479534732 BAM transcriptome harmonized CPTAC3 b98b898b-9c11-4f8d-acd7-bef7c0efceae 6ddf7f4f9c4c7ffe593870ee2d7372e3 {"aliquot_tag": "ALQ_707fa3fb", "gdc_sample_type": "Primary Tumor"} -C3N-03226.WGS.N C3N-03226 HNSCC WGS blood_normal CPT0194530002 CPT0194530002.WholeGenome.RP-1303.bam 83787425758 BAM aligned CPTAC3 acfb912c-3207-47e9-b6a4-e23bb9484be9 1f566c2209472fdbd26176d71636f042 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal"} -C3N-03226.WGS.N.hg38 C3N-03226 HNSCC WGS blood_normal CPT0194530002 8de2dbc8-c6e1-4920-877f-00ac954e87cc_wgs_gdc_realn.bam 120821825260 BAM harmonized CPTAC3 e82e4a19-d2b0-4e3e-96f2-f31efa5e939d 24666c6c6a1512f851cbaf0af81ce8a0 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal"} -C3N-03226.WGS.T C3N-03226 HNSCC WGS tumor CPT0194420009 CPT0194420009.WholeGenome.RP-1303.bam 85835402790 BAM aligned CPTAC3 bd36e052-f33d-4dec-85f4-20e2b6121097 5780e918f8102b67d637f08f3a178278 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor"} -C3N-03226.WGS.T.hg38 C3N-03226 HNSCC WGS tumor CPT0194420009 7664042d-ae27-4d60-9731-0c5cd47b6cce_wgs_gdc_realn.bam 127274141310 BAM harmonized CPTAC3 49227ac8-8976-4f78-bda8-ae721b0f3a60 eba844ca0f527f0e5e8e104f533b6f75 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor"} -C3N-03226.WXS.A C3N-03226 HNSCC WXS tissue_normal CPT0194440009 CPT0194440009.WholeExome.RP-1303.bam 24428758098 BAM aligned CPTAC3 043f272e-1592-40bc-9fe5-878f7ec24fb9 157867079aa63bc4d13c57ca9206a318 {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.WXS.A.hg38 C3N-03226 HNSCC WXS tissue_normal CPT0194440009 ef963d98-73e6-433e-bd84-0390d2c9a1a5_wxs_gdc_realn.bam 34323110173 BAM harmonized CPTAC3 326d0c89-37ec-46d3-8308-ff4056b70c49 aa896732818e19449f1748bf04ce2c8c {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03226.WXS.N C3N-03226 HNSCC WXS blood_normal CPT0194530002 CPT0194530002.WholeExome.RP-1303.bam 25392962324 BAM aligned CPTAC3 302dcc7e-809e-4f10-9fce-b90445f6307a 3e93912a20a80d04cf1f83c4ceb87078 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal"} -C3N-03226.WXS.N.hg38 C3N-03226 HNSCC WXS blood_normal CPT0194530002 8de2dbc8-c6e1-4920-877f-00ac954e87cc_wxs_gdc_realn.bam 34429694025 BAM harmonized CPTAC3 3c8cb21b-c84b-48da-b870-d4b941b0b530 764a81784415237014e48a0e0cfcd498 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal"} -C3N-03226.WXS.T C3N-03226 HNSCC WXS tumor CPT0194420009 CPT0194420009.WholeExome.RP-1303.bam 23112506510 BAM aligned CPTAC3 5f61df23-b135-4421-a013-b86cc5ba0b1a 5ead4a9e7af1dc2c71d8bbbdd9677699 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor"} -C3N-03226.WXS.T.hg38 C3N-03226 HNSCC WXS tumor CPT0194420009 7664042d-ae27-4d60-9731-0c5cd47b6cce_wxs_gdc_realn.bam 31628258860 BAM harmonized CPTAC3 60017027-d9c3-4ef5-b9c2-199b29dacd42 684287a25d96769c078192b43b1765c3 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor"} -C3N-03233.MethArray.Green.A C3N-03233 LUAD Methylation_Array tissue_normal CPT0180740006 203219670118_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9463f036-71cc-4aa2-8614-e122f0f75fee 40cccf21a5f323a8399060c4074c3b72 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.MethArray.Green.T C3N-03233 LUAD Methylation_Array tumor CPT0180730006 203220070156_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3928f56b-ca25-4240-aaf7-6a28e3ab0c84 68179f5807a6f8fa5aeb4cf468e93fb3 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor"} -C3N-03233.MethArray.Red.A C3N-03233 LUAD Methylation_Array tissue_normal CPT0180740006 203219670118_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 db4c1c5c-c72a-46da-a44b-493d88b341ca d8c3ae1a0a89b2ea8a80ea7dfdbd1345 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.MethArray.Red.T C3N-03233 LUAD Methylation_Array tumor CPT0180730006 203220070156_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 6ed6a0b1-5641-4d3f-8b58-aee70e52784b 7901f99d227245cbc2752a87860929bc {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor"} -C3N-03233.miRNA-Seq.A.hg38 C3N-03233 LUAD miRNA-Seq tissue_normal CPT0180740009 4a6a178a-0fa1-4348-9f10-fafa4606af97_mirnaseq_gdc_realn.bam 224994182 BAM harmonized CPTAC3 614dbbf1-edbc-443d-a002-3acfcb125080 6d98b6848703c2bd8dcb2370a8103fc8 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.miRNA-Seq.S17_L008_R1.A C3N-03233 LUAD miRNA-Seq tissue_normal CPT0180740009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L008_R1_001.unaln.bam 202396529 BAM S17_L008_R1 unaligned CPTAC3 a7f9e7d0-d11f-4798-9bb5-82212c05080f ab3522495a7d1cb85f2028923bfcee75 {"aliquot_tag": "ALQ_4d007ee7", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.miRNA-Seq.S45_L007_R1.T C3N-03233 LUAD miRNA-Seq tumor CPT0180730009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L007_R1_001.unaln.bam 181656693 BAM S45_L007_R1 unaligned CPTAC3 41d81d94-710f-4f0f-9adf-b97fa886cd97 e3cc82e75e109aabff92b714790a6e00 {"aliquot_tag": "ALQ_ff20a2f7", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03233.miRNA-Seq.T.hg38 C3N-03233 LUAD miRNA-Seq tumor CPT0180730009 6ab746e5-c9e0-47e8-889b-3e06f70bb9c4_mirnaseq_gdc_realn.bam 198334621 BAM harmonized CPTAC3 a650acb6-4da2-4732-8844-192b4b83cfdc 58bc1c3d93041797e256b9a6095be4f4 {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor"} -C3N-03233.RNA-Seq.chimeric.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.chimeric.gdc_realn.bam 209193687 BAM chimeric harmonized CPTAC3 8d5def53-65f6-4680-8eba-8c549ed2b004 9a42fb53d5d9adacc5354c969ea269f4 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.RNA-Seq.chimeric.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.chimeric.gdc_realn.bam 56558535 BAM chimeric harmonized CPTAC3 228dea37-aa56-4085-bc2a-0c00afefca49 5b35844656bd8c5149513a0377c2ed4a {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor"} -C3N-03233.RNA-Seq.genomic.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.genomic.gdc_realn.bam 6539163199 BAM genomic harmonized CPTAC3 fa1444cd-c008-4a3f-8f8c-c1a737e5f782 3421ea16c8600a31d54aa86a9bf78ba6 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.RNA-Seq.genomic.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.genomic.gdc_realn.bam 10094018077 BAM genomic harmonized CPTAC3 2581d791-5743-48fb-826e-38020a9f2431 1227d7a2cbb8ed9591866eb26369be94 {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor"} -C3N-03233.RNA-Seq.S22_L006_R1.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R1_001.fastq.gz 4398868393 FASTQ S22_L006_R1 unaligned CPTAC3 ab692eb9-6f56-495b-8ba5-5c472daa1a88 4bee877dcf1d2f362ca6f98c796ecb01 {"aliquot_tag": "ALQ_ff20a2f7", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03233.RNA-Seq.S22_L006_R2.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R2_001.fastq.gz 4853859544 FASTQ S22_L006_R2 unaligned CPTAC3 e29e0ecb-5dac-4434-964a-490376a85281 8f4b0a6007e26fa002468729a53ddf23 {"aliquot_tag": "ALQ_ff20a2f7", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03233.RNA-Seq.S8_L002_R1.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R1_001.fastq.gz 2969720597 FASTQ S8_L002_R1 unaligned CPTAC3 9f50a476-f013-4261-8add-8414f62ddc93 8f00b2ad398359333fa069b3e0dda95b {"aliquot_tag": "ALQ_4d007ee7", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.RNA-Seq.S8_L002_R2.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R2_001.fastq.gz 2950322321 FASTQ S8_L002_R2 unaligned CPTAC3 1b6ffd9d-8602-402e-b67b-d7a7ce0ac722 ea921770be9fa73680cf22d8ede2638e {"aliquot_tag": "ALQ_4d007ee7", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.RNA-Seq.transcriptome.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.transcriptome.gdc_realn.bam 6503589886 BAM transcriptome harmonized CPTAC3 7c2e6772-5f41-4c2a-bef4-03bdde88d581 29e55ffe0165ce5c1192d34555af27e7 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.RNA-Seq.transcriptome.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.transcriptome.gdc_realn.bam 9946907669 BAM transcriptome harmonized CPTAC3 1ed28dbf-0652-482f-9e9f-fd58f0e82fc9 f00d575292d56df6ac9901f0946e99f5 {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor"} -C3N-03233.WGS.N C3N-03233 LUAD WGS blood_normal CPT0180830002 CPT0180830002.WholeGenome.RP-1303.bam 61241495192 BAM aligned CPTAC3 f518d261-79d4-4d57-8273-2b8f37fa89a9 9f4d695e3651ba5ecc923434f583778b {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03233.WGS.N.hg38 C3N-03233 LUAD WGS blood_normal CPT0180830002 636b36de-3e38-4ecb-8d7e-48ca57d0e105_wgs_gdc_realn.bam 89231500591 BAM harmonized CPTAC3 e41a62b8-cd92-40da-8a77-98df052dfb6b a0fc51b04aea8d92ac8a8c81416adc9e {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03233.WGS.T C3N-03233 LUAD WGS tumor CPT0180730006 CPT0180730006.WholeGenome.RP-1303.bam 106550781126 BAM aligned CPTAC3 c7695f8e-7a09-4400-8f60-8529f7ce0522 d80c1955f6e25f5760fa08da449d3f47 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor"} -C3N-03233.WGS.T.hg38 C3N-03233 LUAD WGS tumor CPT0180730006 c700325c-8aba-42cf-b647-18fa1c6f878c_wgs_gdc_realn.bam 155198650160 BAM harmonized CPTAC3 ced6ddcf-acb1-4859-9434-aba2b6fa83e7 dccde8742714475f1b7d234dd3768ba4 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor"} -C3N-03233.WXS.A C3N-03233 LUAD WXS tissue_normal CPT0180740006 CPT0180740006.WholeExome.RP-1303.bam 19449554579 BAM aligned CPTAC3 40135735-8c43-4357-9dbe-39c79077d316 96dbbd177e2eb1a2b5cd737629e63945 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.WXS.A.hg38 C3N-03233 LUAD WXS tissue_normal CPT0180740006 fd02e563-ba74-44af-83a7-d60a7858dcad_wxs_gdc_realn.bam 26548202681 BAM harmonized CPTAC3 4df02191-936c-4450-9191-a34bb5c333f4 411e5b8f2ac24ca60c870752e0978e3d {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03233.WXS.N C3N-03233 LUAD WXS blood_normal CPT0180830002 CPT0180830002.WholeExome.RP-1303.bam 21584344446 BAM aligned CPTAC3 76d0eb89-2c30-4062-bc01-9e2a133aa514 d1521d4a03e8f44345aadc2d67897025 {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03233.WXS.N.hg38 C3N-03233 LUAD WXS blood_normal CPT0180830002 636b36de-3e38-4ecb-8d7e-48ca57d0e105_wxs_gdc_realn.bam 29874282977 BAM harmonized CPTAC3 735636d7-7006-433a-b81d-203f334f2f80 a6ed7480ef78ca308fbd552cbb50577e {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03233.WXS.T C3N-03233 LUAD WXS tumor CPT0180730006 CPT0180730006.WholeExome.RP-1303.bam 24112184013 BAM aligned CPTAC3 6a7062bb-1fe7-49f5-ba51-3e2f6a37804b 0690ad3a8edeeabb0ee031a62eb46958 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor"} -C3N-03233.WXS.T.hg38 C3N-03233 LUAD WXS tumor CPT0180730006 c700325c-8aba-42cf-b647-18fa1c6f878c_wxs_gdc_realn.bam 32755281805 BAM harmonized CPTAC3 4b7d019f-7160-4856-8608-41bd5e46b5fc d87ffb1e702e6ef2ca9859b2836c761d {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor"} -C3N-03238.MethArray.Green.A C3N-03238 LUAD Methylation_Array tissue_normal CPT0193900006 203219650127_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 70a42f4f-5974-46ac-93ac-08ebd3ae2632 571d74a23b189af5d70a2111209c4c3b {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.MethArray.Green.T C3N-03238 LUAD Methylation_Array tumor CPT0193870006 203219650176_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3746b636-3eb6-4782-9294-333dbf50635c 949104468114aa9b69f92546ee43547a {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor"} -C3N-03238.MethArray.Red.A C3N-03238 LUAD Methylation_Array tissue_normal CPT0193900006 203219650127_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 63d2fe67-2bd9-4b53-9638-904cfba17f53 6cc9eef137071db9a13848e6c5dd514f {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.MethArray.Red.T C3N-03238 LUAD Methylation_Array tumor CPT0193870006 203219650176_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 896fab69-9962-4534-8f61-22a2c5cafbd3 b331b9ff8bb1e5c978ac1d4696e28277 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor"} -C3N-03238.miRNA-Seq.A.hg38 C3N-03238 LUAD miRNA-Seq tissue_normal CPT0193900009 4df1f42a-3bcf-4190-a07d-9d2f81d53684_mirnaseq_gdc_realn.bam 275423474 BAM harmonized CPTAC3 53dcecd1-f014-435e-a0a3-28ae316c29ff 8d5e553a0f94d7c4b9136063139c0168 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.miRNA-Seq.S14_L006_R1.A C3N-03238 LUAD miRNA-Seq tissue_normal CPT0193900009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L006_R1_001.unaln.bam 251652919 BAM S14_L006_R1 unaligned CPTAC3 7c703b6a-350e-4958-8885-bd7bb4590554 5c31f0272c7faa2ea01a8ba25b182675 {"aliquot_tag": "ALQ_7fc8a354", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.miRNA-Seq.S4_L008_R1.T C3N-03238 LUAD miRNA-Seq tumor CPT0193870009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L008_R1_001.unaln.bam 185720836 BAM S4_L008_R1 unaligned CPTAC3 ed84e3a2-868c-4a54-907c-6f4b6246a6e4 26fd73c4aa636af003ddacad3106d448 {"aliquot_tag": "ALQ_6b4ace1", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03238.miRNA-Seq.T.hg38 C3N-03238 LUAD miRNA-Seq tumor CPT0193870009 819165ed-9ec3-4c05-a16e-b058e05f2c1d_mirnaseq_gdc_realn.bam 204664693 BAM harmonized CPTAC3 2b1ee678-ae93-46e9-a63b-92da3e11efcd eb3e5e13647f85fec741c8d516c6bcc3 {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor"} -C3N-03238.RNA-Seq.chimeric.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.chimeric.gdc_realn.bam 50328154 BAM chimeric harmonized CPTAC3 647279e1-2412-4215-8d6f-62b675abba5f ebe3648b61fdacda4b0eb8a1aad507f4 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.RNA-Seq.chimeric.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.chimeric.gdc_realn.bam 376616615 BAM chimeric harmonized CPTAC3 dc49edb4-af31-417d-bc9a-b07a215a4691 434573771895a016e5748fd32b3b79fe {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor"} -C3N-03238.RNA-Seq.genomic.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.genomic.gdc_realn.bam 9697550628 BAM genomic harmonized CPTAC3 be495263-a550-422f-ae3a-3ceb66805261 1fb743faf076ad29e73501a49e86ef16 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.RNA-Seq.genomic.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.genomic.gdc_realn.bam 8903315406 BAM genomic harmonized CPTAC3 94246398-3920-432e-8a67-03abdc2cb038 b3aca8a63fe3a93e2635810aaba0fc2d {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor"} -C3N-03238.RNA-Seq.S18_L005_R1.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R1_001.fastq.gz 4405329523 FASTQ S18_L005_R1 unaligned CPTAC3 0e991771-8719-4273-a2de-f665f2a9e1e2 5432568e50df19d1cc7bfcc5cc980818 {"aliquot_tag": "ALQ_7fc8a354", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.RNA-Seq.S18_L005_R2.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R2_001.fastq.gz 4711576990 FASTQ S18_L005_R2 unaligned CPTAC3 44bb94a1-eebb-46a7-bb46-897f5c4f0c51 b11c36c07257123503a38c8c86e60b65 {"aliquot_tag": "ALQ_7fc8a354", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.RNA-Seq.S20_L007_R1.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R1_001.fastq.gz 3677865161 FASTQ S20_L007_R1 unaligned CPTAC3 64b860fe-c284-4da3-b37e-4843827fab04 1a6436cac17ad26910a392355a4e668e {"aliquot_tag": "ALQ_6b4ace1", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03238.RNA-Seq.S20_L007_R2.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R2_001.fastq.gz 3999895913 FASTQ S20_L007_R2 unaligned CPTAC3 4ba73c09-93fa-4b37-93f3-0035192a4bf0 bb2d9ad4a6c39a64bfc26555a21cf034 {"aliquot_tag": "ALQ_6b4ace1", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03238.RNA-Seq.transcriptome.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.transcriptome.gdc_realn.bam 11458092213 BAM transcriptome harmonized CPTAC3 20d8bb06-9551-4580-a835-3a9ca4366b9f e61de93d589ee267e012deee6f298795 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.RNA-Seq.transcriptome.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.transcriptome.gdc_realn.bam 9129897901 BAM transcriptome harmonized CPTAC3 7ea0305f-20e8-4302-acd6-f6c6ac219456 436fd74c41bd50e35001d193c2bbd936 {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor"} -C3N-03238.WGS.N C3N-03238 LUAD WGS blood_normal CPT0193990002 CPT0193990002.WholeGenome.RP-1303.bam 56392344919 BAM aligned CPTAC3 7278781c-533f-4144-8494-7f0f1a814aab b7ce8c10bd733207d94626be69085c56 {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-03238.WGS.N.hg38 C3N-03238 LUAD WGS blood_normal CPT0193990002 72e2855c-e53f-494e-a1c7-98cfb3ae3d80_wgs_gdc_realn.bam 81996900039 BAM harmonized CPTAC3 f6d93cb6-f4f3-4485-a5e3-ee8007c76f74 f6275f14df3728cd5346baecfe7a7af1 {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-03238.WGS.T C3N-03238 LUAD WGS tumor CPT0193870006 CPT0193870006.WholeGenome.RP-1303.bam 62284551098 BAM aligned CPTAC3 a975941c-0d94-45d9-9868-1df58fefc8b6 6ada8d46928b17325b70ffc03ee36d4c {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor"} -C3N-03238.WGS.T.hg38 C3N-03238 LUAD WGS tumor CPT0193870006 e8b4516b-888d-454a-b8c3-b13296ae60ed_wgs_gdc_realn.bam 91028129228 BAM harmonized CPTAC3 a4aa0076-1700-4c63-adeb-edb9e1f9c9fe 58785d0993a5122b2115ac317a37a388 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor"} -C3N-03238.WXS.A C3N-03238 LUAD WXS tissue_normal CPT0193900006 CPT0193900006.WholeExome.RP-1303.bam 18626942352 BAM aligned CPTAC3 7e35c976-a4f0-4dd2-a146-15ac301e7f37 5051d4ed42810f38dc7fa418d33d51fe {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.WXS.A.hg38 C3N-03238 LUAD WXS tissue_normal CPT0193900006 0a8903f4-c1bc-456a-ba0c-8d5ad24de495_wxs_gdc_realn.bam 25435066864 BAM harmonized CPTAC3 0d2f7637-fd0f-458c-9022-fac46d21886d 571e5d068e0a976e24d273f3963d1804 {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03238.WXS.N C3N-03238 LUAD WXS blood_normal CPT0193990002 CPT0193990002.WholeExome.RP-1303.bam 19449335163 BAM aligned CPTAC3 53e4c154-9615-430f-9704-03b784ba8e48 4b4034f59763364f7fd2923c611f1cf0 {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-03238.WXS.N.hg38 C3N-03238 LUAD WXS blood_normal CPT0193990002 72e2855c-e53f-494e-a1c7-98cfb3ae3d80_wxs_gdc_realn.bam 26469353781 BAM harmonized CPTAC3 fd74d144-b936-4a19-a6a9-1af6ca61581c 45603cd8cc26d0e711708f34921bc57e {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal"} -C3N-03238.WXS.T C3N-03238 LUAD WXS tumor CPT0193870006 CPT0193870006.WholeExome.RP-1303.bam 24392518025 BAM aligned CPTAC3 95944a7f-efe5-42bb-b776-efd4b7ca575a 1de5d81a37d4844a89f81167d9b4b9f4 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor"} -C3N-03238.WXS.T.hg38 C3N-03238 LUAD WXS tumor CPT0193870006 e8b4516b-888d-454a-b8c3-b13296ae60ed_wxs_gdc_realn.bam 33384403381 BAM harmonized CPTAC3 7767472c-1d11-470f-be44-aa4f7b476daa 72c5b18d7587b30dc55b79220d9fe728 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor"} -C3N-03415.MethArray.Green.T C3N-03415 UCEC Methylation_Array tumor CPT0247910006 203561620091_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 cedbce9a-15c3-41f1-bc3f-97872fc2a4d0 2799d921c8d601c93388e5a61da3896a {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor"} -C3N-03415.MethArray.Red.T C3N-03415 UCEC Methylation_Array tumor CPT0247910006 203561620091_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 0d4d1d08-1478-4d72-8ef9-7b85805c8521 6f07a1cadff8616bc089922f67cc1544 {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor"} -C3N-03415.miRNA-Seq.S6_L001_R1.T C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L001_R1_001.unaln.bam 200579286 BAM S6_L001_R1 unaligned CPTAC3 5f4b4196-dd3c-4529-8489-3eec2b246fba b66b7c7986a86e08f39778cef7594285 {"aliquot_tag": "ALQ_146f87e3", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03415.miRNA-Seq.T.hg38 C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 fa94fe98-ee4e-4dac-b452-efb70d7351ff_mirnaseq_gdc_realn.bam 233648168 BAM harmonized CPTAC3 84bbb569-5365-453b-a52b-e7a9560f1e93 4c905997fb52fb1c1855262dab0a470b {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.chimeric.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.chimeric.gdc_realn.bam 26971950 BAM chimeric harmonized CPTAC3 647fea5e-5196-41ae-bf48-669d7a4dd9e1 c8703a5eaeec9069eb2ba387b23e055e {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.chimeric.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.chimeric.gdc_realn.bam 95731469 BAM chimeric harmonized CPTAC3 0669ab65-816b-4ef9-816a-9296b916ecf8 e526f9b49fc9e86321509cad09659a2f {"aliquot_tag": "ALQ_c96cefbb", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.genomic.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.genomic.gdc_realn.bam 7160960203 BAM genomic harmonized CPTAC3 367fbe82-ff1a-41d3-a266-4b77424bf906 8277fdefb4cb3ecb1d3431481adacc72 {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.genomic.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.genomic.gdc_realn.bam 5768285296 BAM genomic harmonized CPTAC3 17935cef-0311-4470-bcf7-a9bd066c6b51 1a3259306855eb90aee3e0d3f749c7e8 {"aliquot_tag": "ALQ_c96cefbb", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.S19_L005_R1.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R1_001.fastq.gz 3511526323 FASTQ S19_L005_R1 unaligned CPTAC3 8c5d0868-cd21-475d-bbf7-92889d251ee3 8e4b13eb99f07896c07ea4274076658c {"aliquot_tag": "ALQ_146f87e3", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.S19_L005_R2.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R2_001.fastq.gz 3789275913 FASTQ S19_L005_R2 unaligned CPTAC3 8e57165b-a410-4ef9-9157-b63dff799061 2f83f61f19504deef482bb0152139fd8 {"aliquot_tag": "ALQ_146f87e3", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.S46_R1.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R1_001.fastq.gz 3848372346 FASTQ S46_R1 unaligned CPTAC3 92308208-4da3-4147-8caa-e1678ca5301d 585607aa63e2ad0ceb5e0becb2d643a9 {"aliquot_tag": "ALQ_c96cefbb", "sample": "S46", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.S46_R2.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R2_001.fastq.gz 3841117633 FASTQ S46_R2 unaligned CPTAC3 a6e3cb93-7cd5-46d4-b6b7-d02cc86fc8e8 e991749bff7651b69bd53bc5d4bf5a23 {"aliquot_tag": "ALQ_c96cefbb", "sample": "S46", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.transcriptome.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.transcriptome.gdc_realn.bam 10603160436 BAM transcriptome harmonized CPTAC3 6609db36-0ffe-4172-8bc0-4d1ec9f3209f a9e99b1327e921b2b3f56204204b0c55 {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor"} -C3N-03415.RNA-Seq.transcriptome.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.transcriptome.gdc_realn.bam 3506468536 BAM transcriptome harmonized CPTAC3 241be3bc-be8a-4277-9e5c-206bb2913cc2 3a59698d98c2b772fcd25e8f17c4a702 {"aliquot_tag": "ALQ_c96cefbb", "gdc_sample_type": "Primary Tumor"} -C3N-03415.WGS.N C3N-03415 UCEC WGS blood_normal CPT0247930002 CPT0247930002.WholeGenome.RP-1303.bam 59890855103 BAM aligned CPTAC3 db13787e-c756-4201-b2b0-915e4d7f82b4 c86632ecd0e3b5c8e83f14e5b97195d7 {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03415.WGS.N.hg38 C3N-03415 UCEC WGS blood_normal CPT0247930002 96e6a040-9758-4be9-998f-70ed0e638962_wgs_gdc_realn.bam 88191041833 BAM harmonized CPTAC3 7b6b6bc6-cb5c-40e7-a8a7-82ed6d17b6e6 72cdbfae0a031ba12211ea42e84889b1 {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03415.WGS.T C3N-03415 UCEC WGS tumor CPT0247910006 CPT0247910006.WholeGenome.RP-1303.bam 71300698411 BAM aligned CPTAC3 adf31d9d-aee4-4767-95aa-5ab0a3135d46 f5d823ab955da058e79b84fd2f454ec1 {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor"} -C3N-03415.WGS.T.hg38 C3N-03415 UCEC WGS tumor CPT0247910006 4c33c1da-4997-4a47-a91f-741356c209f8_wgs_gdc_realn.bam 103865784250 BAM harmonized CPTAC3 743993e4-da37-4d24-bbfe-3445ea7ec9ad 8d02fdf60a4c8d0a7efa260a237ff51e {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor"} -C3N-03415.WXS.N C3N-03415 UCEC WXS blood_normal CPT0247930002 CPT0247930002.WholeExome.RP-1303.bam 23820916809 BAM aligned CPTAC3 043af00b-d025-4806-8639-8ceb2675a400 7dd4e71b9d01e5dd906900864165ae5f {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03415.WXS.N.hg38 C3N-03415 UCEC WXS blood_normal CPT0247930002 96e6a040-9758-4be9-998f-70ed0e638962_wxs_gdc_realn.bam 33017023972 BAM harmonized CPTAC3 f72e5d8e-b065-4045-8e97-99ac9735b759 4e34ccb2de720e4bdcd9ce336cbaccce {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03415.WXS.T C3N-03415 UCEC WXS tumor CPT0247910006 CPT0247910006.WholeExome.RP-1303.bam 24161542473 BAM aligned CPTAC3 fc53e1b9-d32c-4889-9698-6e1ea5bff77b b3f83d2c5b305f4136dd294cb66a95d1 {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor"} -C3N-03415.WXS.T.hg38 C3N-03415 UCEC WXS tumor CPT0247910006 4c33c1da-4997-4a47-a91f-741356c209f8_wxs_gdc_realn.bam 33247306409 BAM harmonized CPTAC3 6e578bcd-3695-4d10-9f3a-98cfc104b20d 7c1b1300d458df4d27ebdb5bf85df03d {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor"} -C3N-03417.MethArray.Green.T C3N-03417 UCEC Methylation_Array tumor CPT0247880006 203561450103_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0897ab96-f5f3-4be2-987b-1ca303fc7f2e 82b5fa05dce23de00f62ae8adf1038c2 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor"} -C3N-03417.MethArray.Red.T C3N-03417 UCEC Methylation_Array tumor CPT0247880006 203561450103_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 faaf9897-f510-4cbe-b7ae-c9483e45418f 128af30d7d5d53b68cbd37867a2800e5 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor"} -C3N-03417.miRNA-Seq.S5_L001_R1.T C3N-03417 UCEC miRNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACAGTG_S5_L001_R1_001.unaln.bam 185106814 BAM S5_L001_R1 unaligned CPTAC3 fc5d0359-5833-4936-9818-4a3ab1fc035e 270de8d8ae98901ccc6ad3bfa1df6e09 {"aliquot_tag": "ALQ_d2233637", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03417.miRNA-Seq.T.hg38 C3N-03417 UCEC miRNA-Seq tumor CPT0247880009 69932396-89bf-42df-b27e-35d0093d4108_mirnaseq_gdc_realn.bam 210131557 BAM harmonized CPTAC3 0e8fd441-a489-46c7-9159-6219c8f0dee6 b50b687ad0ff65e57cbaeff0a1c1a2bf {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.chimeric.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.chimeric.gdc_realn.bam 31066764 BAM chimeric harmonized CPTAC3 74191c15-3b0a-406a-8be6-4ea4f147ba73 67bef9d21182fa269d5ad99187b60a73 {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.chimeric.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.chimeric.gdc_realn.bam 35955255 BAM chimeric harmonized CPTAC3 b91666c8-e0dd-4e07-8287-f68da2ea8beb 758e6c27cc9dae34df9eeda62cc5a1ac {"aliquot_tag": "ALQ_f40cc60b", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.genomic.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.genomic.gdc_realn.bam 8123581923 BAM genomic harmonized CPTAC3 c6bb5cff-c7c0-42d6-a5e6-dacc95aec80e 37cb4ede9c4ac1e15271263616b6ec40 {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.genomic.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.genomic.gdc_realn.bam 11578742427 BAM genomic harmonized CPTAC3 1c61ca8b-708d-4f65-9a45-81ca80dd397e 207a9670cfc096fe59eba99ebf8960da {"aliquot_tag": "ALQ_f40cc60b", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.S16_L005_R1.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R1_001.fastq.gz 4070988146 FASTQ S16_L005_R1 unaligned CPTAC3 2a4cc097-989c-4932-834d-3f9ce6bf34a4 38950fc3c8698827168d2734a2e2a601 {"aliquot_tag": "ALQ_d2233637", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.S16_L005_R2.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R2_001.fastq.gz 4464777277 FASTQ S16_L005_R2 unaligned CPTAC3 e2da6754-1fa0-4355-a146-66fc98f6e99c 1a6bf8914cfdce4c9dabe499d8c59986 {"aliquot_tag": "ALQ_d2233637", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.S29_R1.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R1_001.fastq.gz 3999600997 FASTQ S29_R1 unaligned CPTAC3 533a2514-6c8d-4800-9c34-7956f713b403 66a4ff7f901ca444b0b29d8d6db1875f {"aliquot_tag": "ALQ_f40cc60b", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.S29_R2.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R2_001.fastq.gz 3834711249 FASTQ S29_R2 unaligned CPTAC3 5584f042-9cdb-4a5f-840c-7485ffb152de 5af6c21774e04a0b7c7a5b005a178564 {"aliquot_tag": "ALQ_f40cc60b", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.transcriptome.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.transcriptome.gdc_realn.bam 13820352739 BAM transcriptome harmonized CPTAC3 313e3f81-97b6-4642-bbb5-9a5c241204cc dcb2115ed0f3bc01758c7561b029b15f {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor"} -C3N-03417.RNA-Seq.transcriptome.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.transcriptome.gdc_realn.bam 4373245971 BAM transcriptome harmonized CPTAC3 24fc8872-a93b-4ea8-833c-753facb8ba07 f47553b7a4ca0c6d0cc2dfc5488af714 {"aliquot_tag": "ALQ_f40cc60b", "gdc_sample_type": "Primary Tumor"} -C3N-03417.WGS.N C3N-03417 UCEC WGS blood_normal CPT0247900002 CPT0247900002.WholeGenome.RP-1303.bam 66344728708 BAM aligned CPTAC3 cd8241ea-ab6d-46fb-a980-1d025846bbfb 91f42349b7d48ae827bc01a34559b8cb {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal"} -C3N-03417.WGS.N.hg38 C3N-03417 UCEC WGS blood_normal CPT0247900002 af45b7d1-1622-428a-8d4b-807203076c65_wgs_gdc_realn.bam 97103645547 BAM harmonized CPTAC3 e222d9bb-8c36-4cf8-b3e0-a30723177dd6 616d54a77b992773f092ad5758fde43e {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal"} -C3N-03417.WGS.T C3N-03417 UCEC WGS tumor CPT0247880006 CPT0247880006.WholeGenome.RP-1303.bam 77961109286 BAM aligned CPTAC3 41ecf88f-b275-4e39-a6ba-52a7a8cc0c04 e881120557bb928854318997d9ef32e6 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor"} -C3N-03417.WGS.T.hg38 C3N-03417 UCEC WGS tumor CPT0247880006 262ce6f3-31fc-452e-929a-7787d1eb9b9d_wgs_gdc_realn.bam 114634757537 BAM harmonized CPTAC3 2515737f-f53d-4793-b276-f90008d741b3 df40234d75aabd397a05cdbd6096cb8f {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor"} -C3N-03417.WXS.N C3N-03417 UCEC WXS blood_normal CPT0247900002 CPT0247900002.WholeExome.RP-1303.bam 31406698312 BAM aligned CPTAC3 14fd2eed-61bf-48a7-a112-fb975a497ffe f84558a9fdd1310d77362b241676317f {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal"} -C3N-03417.WXS.N.hg38 C3N-03417 UCEC WXS blood_normal CPT0247900002 af45b7d1-1622-428a-8d4b-807203076c65_wxs_gdc_realn.bam 42840093354 BAM harmonized CPTAC3 d758d13b-d2d6-4246-87fa-2119fcecfa16 7b184fb4852e515e5a0e1eb1e878ef7e {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal"} -C3N-03417.WXS.T C3N-03417 UCEC WXS tumor CPT0247880006 CPT0247880006.WholeExome.RP-1303.bam 26866683799 BAM aligned CPTAC3 7b09675d-fb51-4a35-afbd-871c780ea0c5 5a458abde8b2a93d9e3506ebabd557a6 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor"} -C3N-03417.WXS.T.hg38 C3N-03417 UCEC WXS tumor CPT0247880006 262ce6f3-31fc-452e-929a-7787d1eb9b9d_wxs_gdc_realn.bam 37833355144 BAM harmonized CPTAC3 c6715583-6f51-4272-bed3-2824a056852c 0de1e57bcb6e963530ee82bd82f287de {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor"} -C3N-03420.MethArray.Green.A C3N-03420 LUAD Methylation_Array tissue_normal CPT0187440006 203220070157_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9f8ae8fd-37cf-47cd-b62c-40857dcdaf3e 4c3baa961ceca94a4b5faf4f88be2cd0 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.MethArray.Green.T C3N-03420 LUAD Methylation_Array tumor CPT0187430006 203219650202_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 be432ae6-7748-4b98-a113-ae73c34892ce c760e9bc812842bcd9b92b90a679d8d1 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor"} -C3N-03420.MethArray.Red.A C3N-03420 LUAD Methylation_Array tissue_normal CPT0187440006 203220070157_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 27e3deda-2811-42ba-8ed7-72ab5ff5df06 41b00b8c51a1b840d3a826f51ced79a8 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.MethArray.Red.T C3N-03420 LUAD Methylation_Array tumor CPT0187430006 203219650202_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 e0209264-0400-43fb-b83e-f6ba28fd924d 24965b67a74e87f81dc46083fca67268 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor"} -C3N-03420.miRNA-Seq.A.hg38 C3N-03420 LUAD miRNA-Seq tissue_normal CPT0187440009 aeb86433-b421-4a57-b600-6fdcdad2b658_mirnaseq_gdc_realn.bam 273609668 BAM harmonized CPTAC3 f7bc31a9-3dce-4715-9229-9ec24398ba4c 35f071058efd77204e284bece1269787 {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.miRNA-Seq.S11_L006_R1.A C3N-03420 LUAD miRNA-Seq tissue_normal CPT0187440009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L006_R1_001.unaln.bam 247835574 BAM S11_L006_R1 unaligned CPTAC3 c94b034a-85ff-44a9-92c2-cb384dfb5fce 96e1a4f1a0eef40ed416b9a7cde9b63c {"aliquot_tag": "ALQ_e3332c7", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.miRNA-Seq.S48_L002_R1.T C3N-03420 LUAD miRNA-Seq tumor CPT0187430009 190206_UNC31-K00269_0191_AH2WY5BBXY_GAGTGG_S48_L002_R1_001.unaln.bam 187990145 BAM S48_L002_R1 unaligned CPTAC3 8cf62662-68ee-4dd5-a4ae-62c86d9c09ce 0cf5f0e04ea738ba2715b859b309d3f6 {"aliquot_tag": "ALQ_bc13eed7", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03420.miRNA-Seq.T.hg38 C3N-03420 LUAD miRNA-Seq tumor CPT0187430009 8113f521-a29c-40af-bc97-d04ee41ab116_mirnaseq_gdc_realn.bam 210031123 BAM harmonized CPTAC3 2a412e46-2269-4360-8f29-487a4bd002fc 07d40f5e5251307b7ef65f52d53c3635 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor"} -C3N-03420.RNA-Seq.chimeric.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.chimeric.gdc_realn.bam 58073273 BAM chimeric harmonized CPTAC3 7b75797f-eaab-4775-bc39-a37149fbbe48 3f69f36412cac3635f30a609b0d6370f {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.RNA-Seq.chimeric.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.chimeric.gdc_realn.bam 91327574 BAM chimeric harmonized CPTAC3 af760099-e500-4723-a48c-1f2c377b93ca f28182f5151ccdb7b818a54d72b6f1d9 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor"} -C3N-03420.RNA-Seq.genomic.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.genomic.gdc_realn.bam 9961804172 BAM genomic harmonized CPTAC3 7e10a9bc-3755-4b87-bf98-7e268da6bb53 e62679d5f8b8e07b2bc0073dffc2afa5 {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.RNA-Seq.genomic.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.genomic.gdc_realn.bam 9239368558 BAM genomic harmonized CPTAC3 ed97d2f8-f92e-4500-b192-a444e5596fd5 0538e21c6cb7707acb6559028274fea3 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor"} -C3N-03420.RNA-Seq.S15_L004_R1.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R1_001.fastq.gz 4501646774 FASTQ S15_L004_R1 unaligned CPTAC3 9d56ac18-6cf8-4a90-8d41-7854c93a5ff0 21d378e9fc0e38e8c45350076e4d0d6f {"aliquot_tag": "ALQ_e3332c7", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.RNA-Seq.S15_L004_R2.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R2_001.fastq.gz 4934314819 FASTQ S15_L004_R2 unaligned CPTAC3 7b211823-2dd4-427b-b0c0-64a491ea091f ac7cd1ab15e66584f58917dbd13d59d4 {"aliquot_tag": "ALQ_e3332c7", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.RNA-Seq.S7_L007_R1.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R1_001.fastq.gz 4197313421 FASTQ S7_L007_R1 unaligned CPTAC3 d344e5c3-d58a-435c-9b94-6e73ab8c27e7 0cce3f6765c7cc93e36e50be88a2d95a {"aliquot_tag": "ALQ_bc13eed7", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03420.RNA-Seq.S7_L007_R2.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R2_001.fastq.gz 4532118716 FASTQ S7_L007_R2 unaligned CPTAC3 5b85fc15-b362-4f45-a1c6-7d5d47d2ed3f 139ba85d1bee264e293f21a3b0ab6a26 {"aliquot_tag": "ALQ_bc13eed7", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03420.RNA-Seq.transcriptome.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.transcriptome.gdc_realn.bam 10629187415 BAM transcriptome harmonized CPTAC3 da6e37a1-dfdd-4b18-aa6c-67d8709b9a0f ac16abf8856324175d5d5bbe8b558b50 {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.RNA-Seq.transcriptome.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.transcriptome.gdc_realn.bam 8191505195 BAM transcriptome harmonized CPTAC3 1185680d-c0ed-4a3d-acb9-2c33b2bcf9dd 88da551fcb000173fd832587a4c94426 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor"} -C3N-03420.WGS.N C3N-03420 LUAD WGS blood_normal CPT0187480002 CPT0187480002.WholeGenome.RP-1303.bam 58848048353 BAM aligned CPTAC3 1843c367-11ff-41bc-be14-f70a13aa1224 e512f1d01104037d01fd6309a1c170c9 {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03420.WGS.N.hg38 C3N-03420 LUAD WGS blood_normal CPT0187480002 12e9b5ca-92a6-44bb-8690-98dbfde28bda_wgs_gdc_realn.bam 84727109368 BAM harmonized CPTAC3 1da5a6bd-2abc-4497-b00b-56113b9bbbce a41eef8707b4fac80c18f3db1e52efd5 {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03420.WGS.T C3N-03420 LUAD WGS tumor CPT0187430006 CPT0187430006.WholeGenome.RP-1303.bam 69333999031 BAM aligned CPTAC3 1ed2b6e5-7c98-4796-8a46-9dc360bfe811 cee20f0d19ccded829e13d079666dfe5 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor"} -C3N-03420.WGS.T.hg38 C3N-03420 LUAD WGS tumor CPT0187430006 2d6e8da1-ae06-469c-9c2b-9671e226351d_wgs_gdc_realn.bam 99360174916 BAM harmonized CPTAC3 49984296-ca82-423c-b56c-b21d86cf99be 4063167b00e6a3e82cded596ffdcbaca {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor"} -C3N-03420.WXS.A C3N-03420 LUAD WXS tissue_normal CPT0187440006 CPT0187440006.WholeExome.RP-1303.bam 25002744430 BAM aligned CPTAC3 f243406d-be01-4974-9ed6-5d8614414d5c 0d04131b5ab49ec07e9e5d8e64249219 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.WXS.A.hg38 C3N-03420 LUAD WXS tissue_normal CPT0187440006 fca7b9ff-b596-4019-ba64-943653002e63_wxs_gdc_realn.bam 34500001887 BAM harmonized CPTAC3 5d685c1e-c98e-4bd5-b7b2-f5248f4a7514 8058777604c1130a3aacba669e9ca431 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03420.WXS.N C3N-03420 LUAD WXS blood_normal CPT0187480002 CPT0187480002.WholeExome.RP-1303.bam 22925850254 BAM aligned CPTAC3 e2577937-a668-4126-b036-5ac5971653c1 4e9a37119b8a7e59cfd65caebe1b380f {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03420.WXS.N.hg38 C3N-03420 LUAD WXS blood_normal CPT0187480002 12e9b5ca-92a6-44bb-8690-98dbfde28bda_wxs_gdc_realn.bam 31555491019 BAM harmonized CPTAC3 209e6c70-967b-4934-b69b-097f395e9759 b7097d128a35ea35cb51f0d00e0bccdd {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03420.WXS.T C3N-03420 LUAD WXS tumor CPT0187430006 CPT0187430006.WholeExome.RP-1303.bam 21709902521 BAM aligned CPTAC3 c86eaac2-2ba7-4e12-8a51-2e3aaa3ee907 eb4a3faef5c53529a95944cb921b9f35 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor"} -C3N-03420.WXS.T.hg38 C3N-03420 LUAD WXS tumor CPT0187430006 2d6e8da1-ae06-469c-9c2b-9671e226351d_wxs_gdc_realn.bam 29913796611 BAM harmonized CPTAC3 7c856009-69c7-453d-ac55-e9a6b9e46451 e6c0b4b355ae6df934ee5464dd62ac95 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor"} -C3N-03424.MethArray.Green.A C3N-03424 LSCC Methylation_Array tissue_normal CPT0245790006 203281980258_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 437d9762-529c-418a-97df-a8d19a567523 a0c5bc76171ab047de00504c43d7e764 {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.MethArray.Green.T C3N-03424 LSCC Methylation_Array tumor CPT0245780006 203219650218_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9a8bcb39-3ced-408c-82b4-75e0ce2ed164 93976aa56180b34409ae9257337182e1 {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor"} -C3N-03424.MethArray.Red.A C3N-03424 LSCC Methylation_Array tissue_normal CPT0245790006 203281980258_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 99a0b654-63fb-4d37-8dbb-d7074f7eb50a 79a2b2fc3cf45534d91dbd1c4ad006fd {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.MethArray.Red.T C3N-03424 LSCC Methylation_Array tumor CPT0245780006 203219650218_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 ff21c816-9237-4932-9f35-4f4aeab4992c 0535ebc02e144125c53708f90543a53f {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor"} -C3N-03424.miRNA-Seq.A.hg38 C3N-03424 LSCC miRNA-Seq tissue_normal CPT0245790009 a71afc85-7aad-4d12-9253-04b7b46a4610_mirnaseq_gdc_realn.bam 308810851 BAM harmonized CPTAC3 7c85594d-ea51-40c8-a42e-c75be1b21b2b a91ab21e9731aa0efe10c93eecaae236 {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.miRNA-Seq.S5_L007_R1.T C3N-03424 LSCC miRNA-Seq tumor CPT0245780009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L007_R1_001.unaln.bam 172221726 BAM S5_L007_R1 unaligned CPTAC3 6b6bfefb-dca5-4f50-834a-d9a2058c508d 86deaf3e24ff09890468eef59e87518f {"aliquot_tag": "ALQ_b4ea95cb", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03424.miRNA-Seq.S7_L007_R1.A C3N-03424 LSCC miRNA-Seq tissue_normal CPT0245790009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L007_R1_001.unaln.bam 275867035 BAM S7_L007_R1 unaligned CPTAC3 f04d350c-5edd-4bf8-9796-78f37cfba163 55f279c2dd54eef38dcd45cc1b5b47bf {"aliquot_tag": "ALQ_898abc7b", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.miRNA-Seq.T.hg38 C3N-03424 LSCC miRNA-Seq tumor CPT0245780009 cd301c86-5942-426c-9a18-d82324c3b785_mirnaseq_gdc_realn.bam 192348732 BAM harmonized CPTAC3 732d8e9b-6878-48ac-83ff-c030b1034aa4 11b5c72e2fed6d5af34a92306a9e3c3a {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor"} -C3N-03424.RNA-Seq.chimeric.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.chimeric.gdc_realn.bam 62521078 BAM chimeric harmonized CPTAC3 53190851-b5c4-4137-918a-26cd18d89749 dc38548e79a55dccfa2ec81375d95293 {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.RNA-Seq.chimeric.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.chimeric.gdc_realn.bam 67971795 BAM chimeric harmonized CPTAC3 b11f2e9f-5bdb-4eee-bf9a-6b48046c6c55 7d1678cb4a72761e5d32d98093eaf73e {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor"} -C3N-03424.RNA-Seq.genomic.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.genomic.gdc_realn.bam 9226318348 BAM genomic harmonized CPTAC3 e19fe19d-d336-4997-b004-7e2e4803904f 03ebad9ac22466ea2a123ef1bbca922e {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.RNA-Seq.genomic.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.genomic.gdc_realn.bam 7997204055 BAM genomic harmonized CPTAC3 686f3b72-0d31-4787-9911-85be92d01ee5 a14218de63b803702b0ec262d10e5a8a {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor"} -C3N-03424.RNA-Seq.S4_L004_R1.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R1_001.fastq.gz 3703824715 FASTQ S4_L004_R1 unaligned CPTAC3 fb14510e-355d-4f8a-b0ac-a0611c639e60 bed63612dfac9d80891191e80c743816 {"aliquot_tag": "ALQ_b4ea95cb", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03424.RNA-Seq.S4_L004_R2.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R2_001.fastq.gz 3956937706 FASTQ S4_L004_R2 unaligned CPTAC3 932af614-1b0a-4a9a-8008-bba4abc8646f 3a1732316dffe5dba71e5bc001613928 {"aliquot_tag": "ALQ_b4ea95cb", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03424.RNA-Seq.S6_L003_R1.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R1_001.fastq.gz 4281360338 FASTQ S6_L003_R1 unaligned CPTAC3 08126d76-9242-4201-882a-4d88b862acbf 04f229308b5bb437e49606daa16b62ae {"aliquot_tag": "ALQ_898abc7b", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.RNA-Seq.S6_L003_R2.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R2_001.fastq.gz 4643006421 FASTQ S6_L003_R2 unaligned CPTAC3 6aeaf104-1e4e-4d23-a1a9-0121601c8035 4aaeafa70883e1d6e4cdf89353bc22b4 {"aliquot_tag": "ALQ_898abc7b", "sample": "S6", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.RNA-Seq.transcriptome.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.transcriptome.gdc_realn.bam 11245597389 BAM transcriptome harmonized CPTAC3 f37dfcaa-4881-460e-b1fe-7be9506c68bb 1f3c2d3fca3846c291a210abd84d180c {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.RNA-Seq.transcriptome.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.transcriptome.gdc_realn.bam 10302121848 BAM transcriptome harmonized CPTAC3 c4b94028-6642-4471-a3b4-6fb0a12904fe def770205349ae607797506889572e62 {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor"} -C3N-03424.WGS.N C3N-03424 LSCC WGS blood_normal CPT0245820002 CPT0245820002.WholeGenome.RP-1303.bam 62890909963 BAM aligned CPTAC3 d19a73fc-1fa3-43e3-ba49-67a5ef252228 3d96cb74a5e956f1184907a1a40102aa {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal"} -C3N-03424.WGS.N.hg38 C3N-03424 LSCC WGS blood_normal CPT0245820002 753658b1-7496-42f3-8340-18be0c34469e_wgs_gdc_realn.bam 91935283813 BAM harmonized CPTAC3 7e37d12d-79c3-4f73-9f13-fe7eded36fef 2701302d39609554de8f2311e74de4b8 {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal"} -C3N-03424.WGS.T C3N-03424 LSCC WGS tumor CPT0245780006 CPT0245780006.WholeGenome.RP-1303.bam 68217504884 BAM aligned CPTAC3 2bdab49f-c65d-44a7-86c7-13b22125df42 c4d78fd9a4f0071fe3b63baa7f5a3d3e {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor"} -C3N-03424.WGS.T.hg38 C3N-03424 LSCC WGS tumor CPT0245780006 8feea2f2-9e23-41cf-81c1-e7226f4908b9_wgs_gdc_realn.bam 101113720811 BAM harmonized CPTAC3 ea90a96c-0137-41da-94d4-e7e7a79700c7 e9db2564cc9ab145410f522b0f911207 {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor"} -C3N-03424.WXS.A C3N-03424 LSCC WXS tissue_normal CPT0245790006 CPT0245790006.WholeExome.RP-1303.bam 23346276876 BAM aligned CPTAC3 7f18e5bc-fc68-4985-bbf8-07dd992d900a cd925932da0190408f1bded20fbdce25 {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.WXS.A.hg38 C3N-03424 LSCC WXS tissue_normal CPT0245790006 b4c167b0-adb8-49c4-905e-8d2971f67fc3_wxs_gdc_realn.bam 32182231762 BAM harmonized CPTAC3 b1781768-b5b7-4784-ab32-9bca6fa0c9d7 8a82339a6f47db5a42306dc5f910fad8 {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03424.WXS.N C3N-03424 LSCC WXS blood_normal CPT0245820002 CPT0245820002.WholeExome.RP-1303.bam 22851946244 BAM aligned CPTAC3 ff2f41d8-5091-4237-ba17-690e2f0fc78d fd2437175d62546fe6be2768e83d3f40 {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal"} -C3N-03424.WXS.N.hg38 C3N-03424 LSCC WXS blood_normal CPT0245820002 753658b1-7496-42f3-8340-18be0c34469e_wxs_gdc_realn.bam 31899295813 BAM harmonized CPTAC3 2abe6156-f924-4cfe-b73a-fa8547091add e952a10fa0a20bcc421b238ea78b96ef {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal"} -C3N-03424.WXS.T C3N-03424 LSCC WXS tumor CPT0245780006 CPT0245780006.WholeExome.RP-1303.bam 18697832508 BAM aligned CPTAC3 ac29251b-9d17-4c51-a91f-8e006a82609d 0722a33d0f226e4d6df8cf2965fbf0f2 {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor"} -C3N-03424.WXS.T.hg38 C3N-03424 LSCC WXS tumor CPT0245780006 8feea2f2-9e23-41cf-81c1-e7226f4908b9_wxs_gdc_realn.bam 26061941278 BAM harmonized CPTAC3 63692549-396c-474a-8b91-c2ac97fcf75f 299e8a1a49293cc0d9aed00dc0797ecb {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor"} -C3N-03425.MethArray.Green.A C3N-03425 LSCC Methylation_Array tissue_normal CPT0245840006 203219650098_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 132b49f7-0973-41e6-b2a7-6a347a3d1c7a 823e9d980079c9362b30fe7bafc27bda {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.MethArray.Green.T C3N-03425 LSCC Methylation_Array tumor CPT0245830006 203220070217_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 35f978b8-3e25-4c4d-8986-52e038570bd7 60fae06a2e66477d21336063a489aa72 {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor"} -C3N-03425.MethArray.Red.A C3N-03425 LSCC Methylation_Array tissue_normal CPT0245840006 203219650098_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 32ff19c3-057b-4f78-8c9f-74ba3b268315 ec52b95bdf7d6634ec23c1131d9f3cfe {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.MethArray.Red.T C3N-03425 LSCC Methylation_Array tumor CPT0245830006 203220070217_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 e513f128-b003-4d62-ae60-b3c00e66926c 89e954aa59196929e4c35cf267896fbe {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor"} -C3N-03425.miRNA-Seq.A.hg38 C3N-03425 LSCC miRNA-Seq tissue_normal CPT0245840009 34c30c8b-4c4a-478b-b225-270ba7e68113_mirnaseq_gdc_realn.bam 264034990 BAM harmonized CPTAC3 426f925e-1c8e-4beb-8f2b-af57200486fd 590a2981384c0e76831fef52d22e57ef {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.miRNA-Seq.S8_L007_R1.T C3N-03425 LSCC miRNA-Seq tumor CPT0245830009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L007_R1_001.unaln.bam 214708882 BAM S8_L007_R1 unaligned CPTAC3 217d57c7-c87f-4442-a204-b7844b665a69 19d6b1d80ed5b20e36ecd6091f5b0369 {"aliquot_tag": "ALQ_326c160f", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03425.miRNA-Seq.S9_L007_R1.A C3N-03425 LSCC miRNA-Seq tissue_normal CPT0245840009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L007_R1_001.unaln.bam 232915820 BAM S9_L007_R1 unaligned CPTAC3 4f26e62b-2bcf-4e08-8e9f-d2955b78a910 a044611e65f73475b3154d761995d7a0 {"aliquot_tag": "ALQ_804cca1f", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.miRNA-Seq.T.hg38 C3N-03425 LSCC miRNA-Seq tumor CPT0245830009 eebfb1f2-0cef-47d9-88dd-17bd1cecd292_mirnaseq_gdc_realn.bam 238780158 BAM harmonized CPTAC3 2545207f-2614-4bf3-897f-cc5ca9c5645e f2275f932530c2ec07ae458a9b56f19a {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor"} -C3N-03425.RNA-Seq.chimeric.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.chimeric.gdc_realn.bam 56348693 BAM chimeric harmonized CPTAC3 cbdd1546-29c3-4ec4-b196-9f74607da8c3 2a63c71d5c1ba571c0387eb829f7216d {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.RNA-Seq.chimeric.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.chimeric.gdc_realn.bam 36975905 BAM chimeric harmonized CPTAC3 7f4c727e-4979-47d5-9d30-c1fc782cbe9c db6bf86018373c2f63128f019a5a0325 {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor"} -C3N-03425.RNA-Seq.genomic.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.genomic.gdc_realn.bam 8045797073 BAM genomic harmonized CPTAC3 5f15563f-c3b5-4aa0-ba15-e1f2a18e0c26 922ff2fd7b3e80ba8a37c7cf82e0b615 {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.RNA-Seq.genomic.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.genomic.gdc_realn.bam 7460685409 BAM genomic harmonized CPTAC3 bf087956-2bb7-4e97-ae61-a097b98e77c2 42a7fe293aff1bb7bfe974037aef91a7 {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor"} -C3N-03425.RNA-Seq.S7_L003_R1.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R1_001.fastq.gz 3927624892 FASTQ S7_L003_R1 unaligned CPTAC3 6dc9b0b2-01c2-4f73-8beb-cfb794f6b555 2c756073b78c7635bdf492e7605036d8 {"aliquot_tag": "ALQ_804cca1f", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.RNA-Seq.S7_L003_R2.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R2_001.fastq.gz 4257501212 FASTQ S7_L003_R2 unaligned CPTAC3 3ca827ca-cee9-4417-b20c-8e537eade377 c56207ea9071bbabd39d20798fb96eb0 {"aliquot_tag": "ALQ_804cca1f", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.RNA-Seq.S8_L003_R1.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R1_001.fastq.gz 3551251612 FASTQ S8_L003_R1 unaligned CPTAC3 72ed9436-a381-4055-b785-68a9352ab86e c173e91723f83208aa731dd7af10c338 {"aliquot_tag": "ALQ_326c160f", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03425.RNA-Seq.S8_L003_R2.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R2_001.fastq.gz 3786048537 FASTQ S8_L003_R2 unaligned CPTAC3 b43f757a-58b7-4b23-9f86-d485ba357aa1 bd00c1f01e506b18a881ee6db6941632 {"aliquot_tag": "ALQ_326c160f", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03425.RNA-Seq.transcriptome.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.transcriptome.gdc_realn.bam 10038441569 BAM transcriptome harmonized CPTAC3 798f70a2-0278-4a9a-9043-f5f8daea89e3 1ced025c0a50c72f7355fdef17db084b {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.RNA-Seq.transcriptome.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.transcriptome.gdc_realn.bam 9059953874 BAM transcriptome harmonized CPTAC3 f059512f-ce9c-4c00-ab16-1febfddeebcf c4966c6434731739a15a4b29cd9bd071 {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor"} -C3N-03425.WGS.N C3N-03425 LSCC WGS blood_normal CPT0245870002 CPT0245870002.WholeGenome.RP-1303.bam 64709659788 BAM aligned CPTAC3 8f9bb9b0-dcf5-493e-8a5b-d965134f2ec8 c7e6b70668e9061aff04c44b6b626166 {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal"} -C3N-03425.WGS.N.hg38 C3N-03425 LSCC WGS blood_normal CPT0245870002 666767b5-d283-426e-ac0c-58d625bfbe52_wgs_gdc_realn.bam 95695120007 BAM harmonized CPTAC3 38ef9d92-ef9e-4137-8fd3-3476b37c258e b9f1b39a60e770c1b0b68bca6a538490 {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal"} -C3N-03425.WGS.T C3N-03425 LSCC WGS tumor CPT0245830006 CPT0245830006.WholeGenome.RP-1303.bam 54590893794 BAM aligned CPTAC3 ff3a85e7-d53e-4dbb-a474-badaa1f00c54 426aa4463635f6e795728bef6364d5de {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor"} -C3N-03425.WGS.T.hg38 C3N-03425 LSCC WGS tumor CPT0245830006 e01db198-b767-4cd5-8f06-2fd55989595b_wgs_gdc_realn.bam 80153819684 BAM harmonized CPTAC3 84e09932-2803-4c90-abf8-6d5c33f2eb5d fa78ee0aa03bed28ba8162641c5b4e7c {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor"} -C3N-03425.WXS.A C3N-03425 LSCC WXS tissue_normal CPT0245840006 CPT0245840006.WholeExome.RP-1303.bam 24267946875 BAM aligned CPTAC3 219e824d-c5dd-4591-90a8-8de6a7d31bb4 7da43ed975d984584aa64da9e17beb9e {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.WXS.A.hg38 C3N-03425 LSCC WXS tissue_normal CPT0245840006 7d5d1988-752c-4480-8790-63255dbe3e89_wxs_gdc_realn.bam 33255663972 BAM harmonized CPTAC3 2d0aa975-efb4-40d9-9207-0c4964f64c32 2115ee0afb208f943ea323a419de6982 {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03425.WXS.N C3N-03425 LSCC WXS blood_normal CPT0245870002 CPT0245870002.WholeExome.RP-1303.bam 18886574711 BAM aligned CPTAC3 e57075d7-ab26-4807-b5f8-d7f8615b2c87 c4f2b9ed3c7f45a67bca22bf3a91a16a {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal"} -C3N-03425.WXS.N.hg38 C3N-03425 LSCC WXS blood_normal CPT0245870002 666767b5-d283-426e-ac0c-58d625bfbe52_wxs_gdc_realn.bam 25964386290 BAM harmonized CPTAC3 fd90d03c-3c87-4517-9a20-fffdd6714e27 ebc01ce27dd72da068f5dbd890e65886 {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal"} -C3N-03425.WXS.T C3N-03425 LSCC WXS tumor CPT0245830006 CPT0245830006.WholeExome.RP-1303.bam 24852470918 BAM aligned CPTAC3 e87eae7f-c6b5-4d39-b26f-9d9fd9f4f049 b4c0b509167136715ccd47241dd9ecc0 {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor"} -C3N-03425.WXS.T.hg38 C3N-03425 LSCC WXS tumor CPT0245830006 e01db198-b767-4cd5-8f06-2fd55989595b_wxs_gdc_realn.bam 34402683446 BAM harmonized CPTAC3 4fe08085-9e1c-4993-8272-3b0acabdac39 fc6eb4821b55ef0473ced156c29ec7da {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor"} -C3N-03426.MethArray.Green.T C3N-03426 PDA Methylation_Array tumor CPT0226600007 203561450106_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 735977c9-bf8d-42ea-add9-65270b63bec5 8ae2b8070c7e8f74e1609a6292d690bd {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor"} -C3N-03426.MethArray.Red.T C3N-03426 PDA Methylation_Array tumor CPT0226600007 203561450106_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 a1a5c53e-1130-468b-b053-07148633b996 0cbeb5e8a7f5e9505bf14bc5a921ca7f {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor"} -C3N-03426.miRNA-Seq.S35_L004_R1.T C3N-03426 PDA miRNA-Seq tumor CPT0226600010 190813_UNC32-K00270_0196_AH5MCWBBXY_GCCAAT_S35_L004_R1_001.unaln.bam 327467507 BAM S35_L004_R1 unaligned CPTAC3 9af93e9c-37e2-47a8-9fec-0223d659a78c f2e6c1e8a2473f6538985312f1a6355b {"aliquot_tag": "ALQ_d8869750", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03426.miRNA-Seq.T.hg38 C3N-03426 PDA miRNA-Seq tumor CPT0226600010 b38c77d7-c235-44cf-925b-b86e74077cae_mirnaseq_gdc_realn.bam 381428449 BAM harmonized CPTAC3 de921739-5ea5-43a2-8bad-f02b12cd5306 7099362bff7a9c0a98f744adb8abd0a3 {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor"} -C3N-03426.RNA-Seq.chimeric.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.chimeric.gdc_realn.bam 94105415 BAM chimeric harmonized CPTAC3 e63d625a-2acd-4027-a8ae-ae1912542a7c dee8d7a1fc2b5f9fa1106dc6a8c09f98 {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor"} -C3N-03426.RNA-Seq.genomic.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.genomic.gdc_realn.bam 7909506972 BAM genomic harmonized CPTAC3 1d3fc52f-2cde-414f-97e7-5175d7699fb6 89d988c5573c5639de58b0bb845cdeaf {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor"} -C3N-03426.RNA-Seq.S2_L001_R1.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 2605705670 FASTQ S2_L001_R1 unaligned CPTAC3 10689c80-11c6-4f26-b1bc-4bc6d9028ab8 354d097c8abc62af67c5072e64a3eb3d {"aliquot_tag": "ALQ_d8869750", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03426.RNA-Seq.S2_L001_R2.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 2581212895 FASTQ S2_L001_R2 unaligned CPTAC3 addcd074-4774-4cdf-b543-b7d8cbefb8f7 0f56eebb9a31a101770ff4b6fb87869b {"aliquot_tag": "ALQ_d8869750", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03426.RNA-Seq.transcriptome.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.transcriptome.gdc_realn.bam 5790967635 BAM transcriptome harmonized CPTAC3 08ce4983-1839-4e45-84b7-2711b1a3396f 8bccc9266dfd947801ba7205dddaa830 {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor"} -C3N-03426.WGS.N C3N-03426 PDA WGS blood_normal CPT0226640002 CPT0226640002.WholeGenome.RP-1303.bam 56099262908 BAM aligned CPTAC3 1db21dd5-0c3e-4ff5-945f-7a56bd17e0c6 1a1ca2ee375e12fe3bb066b4b607d357 {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03426.WGS.N.hg38 C3N-03426 PDA WGS blood_normal CPT0226640002 e1401e98-8f02-415f-a1bf-b72c4bbcac6d_wgs_gdc_realn.bam 83027741213 BAM harmonized CPTAC3 c69c0d6e-891a-4d2b-9969-2983e1159e26 44ec8a0587a51d27d92c01562daedd91 {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03426.WGS.T C3N-03426 PDA WGS tumor CPT0226600007 CPT0226600007.WholeGenome.RP-1303.bam 118306756528 BAM aligned CPTAC3 4baef431-e025-4999-8173-cdc2613e96fe 1b59aa79722b5a381ab7d2690afff4b5 {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor"} -C3N-03426.WGS.T.hg38 C3N-03426 PDA WGS tumor CPT0226600007 c426ad7d-ed66-442f-a1ce-2695de7d1033_wgs_gdc_realn.bam 172306829048 BAM harmonized CPTAC3 d4efe0ee-2aa5-488c-afe1-766c414d1f23 72f4701f504e6f32fc4fa4033657d9a8 {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor"} -C3N-03426.WXS.N C3N-03426 PDA WXS blood_normal CPT0226640002 CPT0226640002.WholeExome.RP-1303.bam 22655196026 BAM aligned CPTAC3 0ff1aa6d-568b-43e5-ada4-ae924e94ec12 219225a07f277ee63c9579dee9c4ed6d {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03426.WXS.N.hg38 C3N-03426 PDA WXS blood_normal CPT0226640002 e1401e98-8f02-415f-a1bf-b72c4bbcac6d_wxs_gdc_realn.bam 31571787936 BAM harmonized CPTAC3 96da296d-a9f1-40ae-b709-f94403b214d2 941442e2f163685868c6ec567478be8d {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03426.WXS.T C3N-03426 PDA WXS tumor CPT0226600007 CPT0226600007.WholeExome.RP-1303.bam 56909699039 BAM aligned CPTAC3 8188d852-11b7-459e-bc1c-f7f7bb1df566 934bbab145e954f8628819a0739ba00a {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor"} -C3N-03426.WXS.T.hg38 C3N-03426 PDA WXS tumor CPT0226600007 c426ad7d-ed66-442f-a1ce-2695de7d1033_wxs_gdc_realn.bam 79600914249 BAM harmonized CPTAC3 99580b9c-c584-4819-ad81-6e875543c0aa 70748e5f7e3338111e0ca4dc179913ef {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor"} -C3N-03428.MethArray.Green.T C3N-03428 PDA Methylation_Array tumor CPT0226680008 203561620043_R01C01_Grn.idat 13676212 IDAT Green NA CPTAC3 65cdff2e-08d6-475a-9b24-9d775a4784dc 7df95f7f38fa4f179f98c12312a07b9c {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor"} -C3N-03428.MethArray.Red.T C3N-03428 PDA Methylation_Array tumor CPT0226680008 203561620043_R01C01_Red.idat 13676212 IDAT Red NA CPTAC3 ab6719f9-5a7f-4632-81d4-a7bdab79a4ae f391dd5ba4e89e4cf81125a097de00d6 {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor"} -C3N-03428.miRNA-Seq.S29_L005_R1.T C3N-03428 PDA miRNA-Seq tumor CPT0226680011 190712_UNC32-K00270_0192_BH7HL3BBXY_GCCAAT_S29_L005_R1_001.unaln.bam 256151116 BAM S29_L005_R1 unaligned CPTAC3 e4b21eb7-e2b0-4964-b321-efe09cabc0a8 d145adb995125386a82d66c4d5cedfc6 {"aliquot_tag": "ALQ_9ff1ec07", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03428.miRNA-Seq.T.hg38 C3N-03428 PDA miRNA-Seq tumor CPT0226680011 86f5958b-f491-408e-a9f1-6d79fb4cb40d_mirnaseq_gdc_realn.bam 284249769 BAM harmonized CPTAC3 f8207596-f3ec-4fa9-a843-015006f95ef3 bd75045199f13c568776bd9f7242ee8f {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor"} -C3N-03428.RNA-Seq.chimeric.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.chimeric.gdc_realn.bam 32739224 BAM chimeric harmonized CPTAC3 194b64be-8c68-4a9e-89cf-df9cd544ad82 5f4fa78f22055baf22bc7ae95eadfb24 {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor"} -C3N-03428.RNA-Seq.genomic.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.genomic.gdc_realn.bam 8069722755 BAM genomic harmonized CPTAC3 52316ee4-0af6-4f8f-8183-5a9d7c6d74cd e4d90128f63f25bdfe9e092a092d6ba5 {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor"} -C3N-03428.RNA-Seq.S31_L008_R1.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R1_001.fastq.gz 3720892004 FASTQ S31_L008_R1 unaligned CPTAC3 d4ac5776-aedd-417d-acfd-936a62bd5b7d a16dc63f2f96d241c51d09915decb5a5 {"aliquot_tag": "ALQ_9ff1ec07", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03428.RNA-Seq.S31_L008_R2.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R2_001.fastq.gz 3974453516 FASTQ S31_L008_R2 unaligned CPTAC3 deab0ab5-9f7c-44e6-85ee-ac6a9a7cab11 b046df42ee9751a29771a21d077d9f96 {"aliquot_tag": "ALQ_9ff1ec07", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03428.RNA-Seq.transcriptome.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.transcriptome.gdc_realn.bam 9925576945 BAM transcriptome harmonized CPTAC3 c9db942a-f4f9-480b-ba8c-de25ab68a0fa ce938a86c82ac55e645578edeb21d0d8 {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor"} -C3N-03428.WGS.N C3N-03428 PDA WGS blood_normal CPT0226720002 CPT0226720002.WholeGenome.RP-1303.bam 64105818552 BAM aligned CPTAC3 689cbb5c-de24-4211-a92c-74b7c42ed346 0e755d1f57852195102a03df30c8d483 {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03428.WGS.N.hg38 C3N-03428 PDA WGS blood_normal CPT0226720002 df3d862b-c249-43df-a730-792e40c866de_wgs_gdc_realn.bam 93356081387 BAM harmonized CPTAC3 98404d6e-1b67-4609-bac9-b26d04eff976 58f84264482b709ce5d9746b55c4286a {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03428.WGS.T C3N-03428 PDA WGS tumor CPT0226680008 CPT0226680008.WholeGenome.RP-1303.bam 159184993263 BAM aligned CPTAC3 bebbed4e-065a-4fdb-90f6-2b89b325016e e15a94eba8445abd8e8750d1a8668082 {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor"} -C3N-03428.WGS.T.hg38 C3N-03428 PDA WGS tumor CPT0226680008 3c584b4e-bd54-4140-8b24-e25208429a2a_wgs_gdc_realn.bam 232119374195 BAM harmonized CPTAC3 513e5566-ceee-4f3a-a5d5-55e2c5ccccca ba6fda2145e78a09eeb7dac777f3922d {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor"} -C3N-03428.WXS.N C3N-03428 PDA WXS blood_normal CPT0226720002 CPT0226720002.WholeExome.RP-1303.bam 26837318595 BAM aligned CPTAC3 72c2cc68-82b6-433b-bda9-d3778e3e50bc 76ff118e2a022974ffb2511227d76289 {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03428.WXS.N.hg38 C3N-03428 PDA WXS blood_normal CPT0226720002 df3d862b-c249-43df-a730-792e40c866de_wxs_gdc_realn.bam 37356551717 BAM harmonized CPTAC3 26d7f2e8-8156-48c2-b39c-d2e5418147f6 128d918ffdb46a843cef41a757695714 {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03428.WXS.T C3N-03428 PDA WXS tumor CPT0226680008 CPT0226680008.WholeExome.RP-1303.bam 47967324369 BAM aligned CPTAC3 87c981ee-c681-482c-a9bc-a93881b1e143 8fcac229d452ebcf78f158baa46bb51f {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor"} -C3N-03428.WXS.T.hg38 C3N-03428 PDA WXS tumor CPT0226680008 3c584b4e-bd54-4140-8b24-e25208429a2a_wxs_gdc_realn.bam 66224428551 BAM harmonized CPTAC3 f8b10c39-a5fb-4e95-95b3-18eafb8f4800 9d80471330a10a4eb3b8ecc7fe0c0b9a {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor"} -C3N-03430.MethArray.Green.T C3N-03430 PDA Methylation_Array tumor CPT0226650007 203561450006_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 d1117d8a-8d93-4e88-a5e8-500f196b5d26 d9ab252a654bd88d2cdb863f85679696 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor"} -C3N-03430.MethArray.Red.T C3N-03430 PDA Methylation_Array tumor CPT0226650007 203561450006_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 3713dafe-38c5-48b9-86d7-5f73ebf9feae bc661d40e47a3e7ba31fbe4eff3d92cb {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor"} -C3N-03430.miRNA-Seq.S36_L004_R1.T C3N-03430 PDA miRNA-Seq tumor CPT0226650010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAGATC_S36_L004_R1_001.unaln.bam 311889008 BAM S36_L004_R1 unaligned CPTAC3 06aab8c5-097f-46a8-8997-ced55c40b803 b0e0f136b2ced0bbd27ba2f33ef13dc1 {"aliquot_tag": "ALQ_10661820", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03430.miRNA-Seq.T.hg38 C3N-03430 PDA miRNA-Seq tumor CPT0226650010 c284beff-1380-4156-a90c-ba1d022f1e03_mirnaseq_gdc_realn.bam 348498633 BAM harmonized CPTAC3 3474adb1-bf9c-4dda-8527-33fef24a3d55 661711d54db9000f9525f889847b1d27 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor"} -C3N-03430.RNA-Seq.chimeric.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.chimeric.gdc_realn.bam 111312047 BAM chimeric harmonized CPTAC3 479bcf08-6d36-4b84-b170-0e9a7ac17e21 5ffbec6dc535eaaa7b2a5e775067cd30 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor"} -C3N-03430.RNA-Seq.genomic.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.genomic.gdc_realn.bam 6631079726 BAM genomic harmonized CPTAC3 6d76451b-e7cc-4431-8cf1-bb574452022b 4549a0b784d3b3ecc2a94bf2f2427382 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor"} -C3N-03430.RNA-Seq.S1_L001_R1.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 2397546168 FASTQ S1_L001_R1 unaligned CPTAC3 48bd5073-acb2-4ba5-8c6c-e0bea42b7012 3f8c62f879e28e558f9a7649ce5d2db0 {"aliquot_tag": "ALQ_10661820", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03430.RNA-Seq.S1_L001_R2.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 2370816951 FASTQ S1_L001_R2 unaligned CPTAC3 8fe1f59a-76c6-42f0-b83e-8eeb928a0851 4981a0995db4a4229a7f4fb0d5fc8361 {"aliquot_tag": "ALQ_10661820", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03430.RNA-Seq.transcriptome.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.transcriptome.gdc_realn.bam 5641096665 BAM transcriptome harmonized CPTAC3 3b933097-e6fb-4f90-9bae-a0d77d2c4108 691778ec7fb97c7d28dff9502eae84e6 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor"} -C3N-03430.WGS.N C3N-03430 PDA WGS blood_normal CPT0226670002 CPT0226670002.WholeGenome.RP-1303.bam 67159181105 BAM aligned CPTAC3 e84df314-9b75-46d6-83c8-344559dcd0b8 30a72a01fcda87be57c5249b42f1eced {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03430.WGS.N.hg38 C3N-03430 PDA WGS blood_normal CPT0226670002 d830fd81-eac7-4f0d-b5fa-c51509daf431_wgs_gdc_realn.bam 97642542361 BAM harmonized CPTAC3 7f08857f-fc3d-41c5-82af-28edd49df44b 77c496db585ca72d57fc98e708d66fbc {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03430.WGS.T C3N-03430 PDA WGS tumor CPT0226650007 CPT0226650007.WholeGenome.RP-1303.bam 115138493964 BAM aligned CPTAC3 9d2a9eea-fb74-4839-badb-39b2780e01a0 06092948fd3c26d5d163b97097e1fa06 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor"} -C3N-03430.WGS.T.hg38 C3N-03430 PDA WGS tumor CPT0226650007 690d9895-ded6-4991-939a-5316e6da152a_wgs_gdc_realn.bam 167250407955 BAM harmonized CPTAC3 632ea71a-ceb4-418b-a7ce-17cd18dd107a 42e8eb9047d069b15c933f9e9b7c1ccc {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor"} -C3N-03430.WXS.N C3N-03430 PDA WXS blood_normal CPT0226670002 CPT0226670002.WholeExome.RP-1303.bam 26952602362 BAM aligned CPTAC3 1d28a6e8-730e-4075-bf87-7135a75f015c a9592dd63cc57c2dbc4008c40d576ae7 {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03430.WXS.N.hg38 C3N-03430 PDA WXS blood_normal CPT0226670002 d830fd81-eac7-4f0d-b5fa-c51509daf431_wxs_gdc_realn.bam 36777887179 BAM harmonized CPTAC3 fac002b5-59e3-4436-8e4e-e356015f059e c05764becb8fd491782bee53c9d62bc2 {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03430.WXS.T C3N-03430 PDA WXS tumor CPT0226650007 CPT0226650007.WholeExome.RP-1303.bam 57832486132 BAM aligned CPTAC3 51423404-09f8-41f4-86dc-17b845f732e6 155d136d8ddc7686b5c605759e186e72 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor"} -C3N-03430.WXS.T.hg38 C3N-03430 PDA WXS tumor CPT0226650007 690d9895-ded6-4991-939a-5316e6da152a_wxs_gdc_realn.bam 79350124184 BAM harmonized CPTAC3 966b0f79-5465-42b5-b0cb-430ec1c4d65f c8e0ac639f8f5b7eccfbf3c6c905f945 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor"} -C3N-03433.MethArray.Green.T C3N-03433 HNSCC Methylation_Array tumor CPT0246540006 203220070084_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f3d5b2cd-08a5-4505-ada7-ef8fa1347134 4659cdf453d699d5c4d5062d2caa4db7 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor"} -C3N-03433.MethArray.Red.T C3N-03433 HNSCC Methylation_Array tumor CPT0246540006 203220070084_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 68814217-c1a6-4642-a357-60849b805e4e 5be35312f6fab5f5aa6d3d2b977516e3 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor"} -C3N-03433.miRNA-Seq.S46_L007_R1.T C3N-03433 HNSCC miRNA-Seq tumor CPT0246540009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L007_R1_001.unaln.bam 154690817 BAM S46_L007_R1 unaligned CPTAC3 580c152f-0bf9-44bc-b980-6598d4e7e533 b4aa28776988225aaa56a8ae887569e6 {"aliquot_tag": "ALQ_d3ac35c", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03433.miRNA-Seq.T.hg38 C3N-03433 HNSCC miRNA-Seq tumor CPT0246540009 a962a8dd-31dc-4489-a272-455822f6b5ba_mirnaseq_gdc_realn.bam 176192367 BAM harmonized CPTAC3 29eba54f-25ca-485b-99bc-e9ea311f4640 b19e3a7528671918cd66ded1b730e7bf {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.chimeric.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.chimeric.gdc_realn.bam 29788071 BAM chimeric harmonized CPTAC3 633ff37c-9313-4da2-960f-0156a8329878 9d12d300c3814f965cac81f573c4cbdf {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.chimeric.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.chimeric.gdc_realn.bam 65873853 BAM chimeric harmonized CPTAC3 f7ef5403-705e-4a9f-b9e9-ae0d929a9dc9 ccf2ce8bb60909bbf5eaf0d3428af1ca {"aliquot_tag": "ALQ_2d906c28", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.genomic.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.genomic.gdc_realn.bam 7979331765 BAM genomic harmonized CPTAC3 aa8c0a9b-7405-4c24-9147-1a55616d6757 f03a1ca0110caf97d12af98f86a4836c {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.genomic.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.genomic.gdc_realn.bam 6731952855 BAM genomic harmonized CPTAC3 f5a33d09-baa5-4f09-aac7-ace9f92b407f fdf5fac8be8aa08e9f15c95948e588c0 {"aliquot_tag": "ALQ_2d906c28", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.S22_L006_R1.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R1_001.fastq.gz 3708802195 FASTQ S22_L006_R1 unaligned CPTAC3 ed013c48-952a-4f72-ba08-175e6da76a1a 7aeea3c6ffc3ea4fbea9977c56d46be4 {"aliquot_tag": "ALQ_d3ac35c", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.S22_L006_R2.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R2_001.fastq.gz 4197303956 FASTQ S22_L006_R2 unaligned CPTAC3 49070be9-0373-416d-9be7-d4940215d243 5e7ba1b92b76c3d1f80c7f17f0c6566d {"aliquot_tag": "ALQ_d3ac35c", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.S60_R1.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R1_001.fastq.gz 3721069148 FASTQ S60_R1 unaligned CPTAC3 3bceb11f-7a0f-404d-82bd-8807c6e2996d 2d6ed45c651aaa5ecd9f23417fa70349 {"aliquot_tag": "ALQ_2d906c28", "sample": "S60", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.S60_R2.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R2_001.fastq.gz 3972555233 FASTQ S60_R2 unaligned CPTAC3 d7ef5f90-8ea4-4ba3-822c-7c3c6cd85f0c 232239c0ab975ec71b0d166d49a267a7 {"aliquot_tag": "ALQ_2d906c28", "sample": "S60", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.transcriptome.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.transcriptome.gdc_realn.bam 9747723758 BAM transcriptome harmonized CPTAC3 7f97baca-fd0c-4045-9150-f8336245d206 c2447a9ba58869bd5428006e32a0b32b {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor"} -C3N-03433.RNA-Seq.transcriptome.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.transcriptome.gdc_realn.bam 5721998501 BAM transcriptome harmonized CPTAC3 a103372c-5db1-4ad0-a149-14d15d5637d3 7ea7a47fbd4d744ba8be525b72d59278 {"aliquot_tag": "ALQ_2d906c28", "gdc_sample_type": "Primary Tumor"} -C3N-03433.WGS.N C3N-03433 HNSCC WGS blood_normal CPT0246580002 CPT0246580002.WholeGenome.RP-1303.bam 62828333389 BAM aligned CPTAC3 b665f9e7-ed8b-4cdd-a99d-4adac88a6281 bb70d43d85fe8a2f2825b3915f88efd7 {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-03433.WGS.N.hg38 C3N-03433 HNSCC WGS blood_normal CPT0246580002 f6da68ae-560b-4c3b-9491-3de4f4e258eb_wgs_gdc_realn.bam 92639762512 BAM harmonized CPTAC3 7b2b52f2-aa0c-4549-8517-79b95b8ae273 9ed15abbc79de596a338e694694f0928 {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-03433.WGS.T C3N-03433 HNSCC WGS tumor CPT0246540006 CPT0246540006.WholeGenome.RP-1303.bam 85106433978 BAM aligned CPTAC3 3b3f354b-1b91-4286-a239-ba41ead91886 e4dc0cf326a12a1c5905ab5d5d7a9af8 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor"} -C3N-03433.WGS.T.hg38 C3N-03433 HNSCC WGS tumor CPT0246540006 9b9514c9-9703-4749-8826-8e416ab90086_wgs_gdc_realn.bam 123803329850 BAM harmonized CPTAC3 288e741a-1127-49e5-bce1-a88669744b9d cc2fce31a76b57b6875773482364f3d6 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor"} -C3N-03433.WXS.N C3N-03433 HNSCC WXS blood_normal CPT0246580002 CPT0246580002.WholeExome.RP-1303.bam 24358729871 BAM aligned CPTAC3 18c49978-c566-4774-adb1-9c2b272d3fea c684d5f7d61bd5ff2c5738bf8cd850ec {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-03433.WXS.N.hg38 C3N-03433 HNSCC WXS blood_normal CPT0246580002 f6da68ae-560b-4c3b-9491-3de4f4e258eb_wxs_gdc_realn.bam 33418519250 BAM harmonized CPTAC3 699303ee-1e27-4e62-b7cb-d9988bd24dda b50667517b56abf92ec37634ba195da7 {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-03433.WXS.T C3N-03433 HNSCC WXS tumor CPT0246540006 CPT0246540006.WholeExome.RP-1303.bam 33681589011 BAM aligned CPTAC3 758ba410-a829-4d2c-9339-504a69ca8d2f 812389a3e816114327e811a30e8c55c0 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor"} -C3N-03433.WXS.T.hg38 C3N-03433 HNSCC WXS tumor CPT0246540006 9b9514c9-9703-4749-8826-8e416ab90086_wxs_gdc_realn.bam 45754644843 BAM harmonized CPTAC3 6296db9d-c596-4368-a5b2-0da9decc468c 680e3ae05a0cab4a5ebb9c2acc7ddc15 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor"} -C3N-03438.RNA-Seq.chimeric.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.chimeric.gdc_realn.bam 117622750 BAM chimeric harmonized CPTAC3 9ab97120-b3c5-45f8-b86d-9f8a0eea6937 5cb6c5a791824ca85f954b631502f4ce {"aliquot_tag": "ALQ_b9d6966a", "gdc_sample_type": "Primary Tumor"} -C3N-03438.RNA-Seq.genomic.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.genomic.gdc_realn.bam 5435031485 BAM genomic harmonized CPTAC3 26981751-e14c-40ae-b174-ef0c2b2b0ca2 aab7f10bfae165a0b41603c7869863df {"aliquot_tag": "ALQ_b9d6966a", "gdc_sample_type": "Primary Tumor"} -C3N-03438.RNA-Seq.S89_R1.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R1_001.fastq.gz 3607910603 FASTQ S89_R1 unaligned CPTAC3 a81bd3fe-db96-4afd-9bab-fc3ac0b8ba30 e9499c0bc4448c311103768f3c994275 {"aliquot_tag": "ALQ_b9d6966a", "sample": "S89", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03438.RNA-Seq.S89_R2.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R2_001.fastq.gz 3739843122 FASTQ S89_R2 unaligned CPTAC3 acbe8b30-2dff-4b1d-a4c9-8d8c2a66af6c 8b08674c1e0da00396803b4b9f3693dd {"aliquot_tag": "ALQ_b9d6966a", "sample": "S89", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03438.RNA-Seq.transcriptome.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.transcriptome.gdc_realn.bam 3896982230 BAM transcriptome harmonized CPTAC3 8fce4ff2-a367-4086-837a-e4097270001f 78183288e3292cff1640239a6fd77959 {"aliquot_tag": "ALQ_b9d6966a", "gdc_sample_type": "Primary Tumor"} -C3N-03439.MethArray.Green.T C3N-03439 PDA Methylation_Array tumor CPT0246260010 203561620095_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bf67fc59-9188-4e92-9c69-c0c635be60e7 e55ee7ed28efb444def17b1b48694592 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor"} -C3N-03439.MethArray.Red.T C3N-03439 PDA Methylation_Array tumor CPT0246260010 203561620095_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 dd25ef84-d242-4962-815c-9a76bc282df3 e14d6ad029d2b7a39466bb9c9fdec9b7 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor"} -C3N-03439.miRNA-Seq.S19_L004_R1.T C3N-03439 PDA miRNA-Seq tumor CPT0246260007 190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L004_R1_001.unaln.bam 209647151 BAM S19_L004_R1 unaligned CPTAC3 6a6f1bdf-3399-4258-98b3-af71700678fe f900c8c198016e788890901b72ec90c3 {"aliquot_tag": "ALQ_8d478d83", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03439.miRNA-Seq.T.hg38 C3N-03439 PDA miRNA-Seq tumor CPT0246260007 cfe81935-c97e-464c-bf66-e21e3856757e_mirnaseq_gdc_realn.bam 241526043 BAM harmonized CPTAC3 a51e8bae-1604-4095-91cb-0a21c9bdd62d 0d045e02b0a5a6b27f4195944865c61c {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor"} -C3N-03439.RNA-Seq.chimeric.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.chimeric.gdc_realn.bam 29189824 BAM chimeric harmonized CPTAC3 bcc48430-2bc7-43c0-8ead-f4a821a1cbce 16ca99c4bc07bb32910edf71fb41a510 {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor"} -C3N-03439.RNA-Seq.genomic.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.genomic.gdc_realn.bam 7904147192 BAM genomic harmonized CPTAC3 50b35bf4-cb86-4dc0-b8f7-2ec4563cc2ac f7a522e04ebca410f887d4e2b05a72fa {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor"} -C3N-03439.RNA-Seq.S7_L002_R1.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3651426360 FASTQ S7_L002_R1 unaligned CPTAC3 733cff74-fce8-4ca0-8419-345f3b8f9e32 8b55ae2102ca748c115b4d94a7c10a8e {"aliquot_tag": "ALQ_8d478d83", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03439.RNA-Seq.S7_L002_R2.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4218278823 FASTQ S7_L002_R2 unaligned CPTAC3 8dba4a07-6c9f-435d-a734-c00d9700b809 33253889f7e0463873e069deb5e75f00 {"aliquot_tag": "ALQ_8d478d83", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03439.RNA-Seq.transcriptome.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.transcriptome.gdc_realn.bam 10727802900 BAM transcriptome harmonized CPTAC3 76a5a913-1b84-44ce-80f0-aea9f28a3d5d b533e02942fe6995c38ef7fd285c50f8 {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor"} -C3N-03439.WGS.N C3N-03439 PDA WGS blood_normal CPT0246300002 CPT0246300002.WholeGenome.RP-1303.bam 70732851662 BAM aligned CPTAC3 f97075a3-df6a-4208-ac02-2f9e7719ec33 86f90934f5be4583726ce59fd1b42b15 {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal"} -C3N-03439.WGS.N.hg38 C3N-03439 PDA WGS blood_normal CPT0246300002 b16d1725-592b-4706-8e06-3f82e29aa80f_wgs_gdc_realn.bam 103714929548 BAM harmonized CPTAC3 95dd370f-fc32-48c8-b01d-b2ef95a3dd8f cc1efde267e1621281a727949d24efc0 {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal"} -C3N-03439.WGS.T C3N-03439 PDA WGS tumor CPT0246260010 CPT0246260010.WholeGenome.RP-1303.bam 137064081479 BAM aligned CPTAC3 09d750dd-bd9a-4a5f-9d8e-da929fb50173 0abb30962cb20726be3593baa2b32065 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor"} -C3N-03439.WGS.T.hg38 C3N-03439 PDA WGS tumor CPT0246260010 43a0c81e-9e4b-4938-b601-b7450500bac7_wgs_gdc_realn.bam 199310145608 BAM harmonized CPTAC3 1210d4fc-3234-482c-b4d7-9397ab4813c4 afc2659a2f830326e8855c880e458f55 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor"} -C3N-03439.WXS.N C3N-03439 PDA WXS blood_normal CPT0246300002 CPT0246300002.WholeExome.RP-1303.bam 23486987717 BAM aligned CPTAC3 6eb40ddd-696c-4d8c-8a43-cfb1891c631e 23e0481522eeccd6b342f1633f7e5954 {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal"} -C3N-03439.WXS.N.hg38 C3N-03439 PDA WXS blood_normal CPT0246300002 b16d1725-592b-4706-8e06-3f82e29aa80f_wxs_gdc_realn.bam 32612506300 BAM harmonized CPTAC3 4ed0783e-3bb8-4ed7-a927-fd11d84dbfb8 80aba468c1cd81bea3b3b87aabd998ee {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal"} -C3N-03439.WXS.T C3N-03439 PDA WXS tumor CPT0246260010 CPT0246260010.WholeExome.RP-1303.bam 53152559458 BAM aligned CPTAC3 670c48bd-7e26-46fd-8444-e030a77a6b39 9b6d00a4d3cc6eba6a2e756ac2ededa4 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor"} -C3N-03439.WXS.T.hg38 C3N-03439 PDA WXS tumor CPT0246260010 43a0c81e-9e4b-4938-b601-b7450500bac7_wxs_gdc_realn.bam 74230558070 BAM harmonized CPTAC3 94bdf0ae-7c07-4eff-8199-4de6a73ae250 cb551bee3235e8f62e44eed1fbea14d3 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor"} -C3N-03440.MethArray.Green.A C3N-03440 PDA Methylation_Array tissue_normal CPT0246220007 203561620052_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4ed1eb10-ac7b-460a-a1fe-abaaf59a49a9 8ae0f8c9e91cf671fcacfb09e826f1d7 {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.MethArray.Green.T C3N-03440 PDA Methylation_Array tumor CPT0246210010 203561450062_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 5f4c3129-c2f4-4850-b7c7-0f1c1f3cd5ec 02fc490eaab4dfe178eeaeffb22d2684 {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor"} -C3N-03440.MethArray.Red.A C3N-03440 PDA Methylation_Array tissue_normal CPT0246220007 203561620052_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 bc5d1185-037d-4dfa-a9e9-7dc5b9374fb6 0b80cf4032506baa9d2072af20478bbd {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.MethArray.Red.T C3N-03440 PDA Methylation_Array tumor CPT0246210010 203561450062_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 ed9e2b10-ccdb-4128-950f-20772cb71f01 b298fae644f2db38401c97bf9c9c834b {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor"} -C3N-03440.miRNA-Seq.A.hg38 C3N-03440 PDA miRNA-Seq tissue_normal CPT0246220010 4a20de06-79ec-4920-92b6-1178541a7e66_mirnaseq_gdc_realn.bam 289167908 BAM harmonized CPTAC3 e4c62540-de65-4be6-9b0f-397245edf8b9 fdfee1d9206c4f961d5a2b2e65066a0f {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.miRNA-Seq.S18_L004_R1.T C3N-03440 PDA miRNA-Seq tumor CPT0246210007 190712_UNC32-K00270_0192_BH7HL3BBXY_TAATCG_S18_L004_R1_001.unaln.bam 215458294 BAM S18_L004_R1 unaligned CPTAC3 0aefa218-3f11-42f5-a99c-779b5d325ba0 1a4abe9aa752c8448e372ac59c27d70d {"aliquot_tag": "ALQ_3f675193", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03440.miRNA-Seq.S2_L003_R1.A C3N-03440 PDA miRNA-Seq tissue_normal CPT0246220010 190813_UNC32-K00270_0196_AH5MCWBBXY_TCGGCA_S2_L003_R1_001.unaln.bam 254477644 BAM S2_L003_R1 unaligned CPTAC3 ce85c0f7-7250-40f6-babe-d15301ac78fe 988b148948d3dd782be980b8f79e265a {"aliquot_tag": "ALQ_ffb88fa1", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.miRNA-Seq.T.hg38 C3N-03440 PDA miRNA-Seq tumor CPT0246210007 84854605-fa1e-4b14-9786-0de6323df9a4_mirnaseq_gdc_realn.bam 244230165 BAM harmonized CPTAC3 a9581d80-c6f2-45b5-b969-460af965bd3b de9907a2436d9afbb51978bb976d14c9 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor"} -C3N-03440.RNA-Seq.chimeric.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.chimeric.gdc_realn.bam 17972583 BAM chimeric harmonized CPTAC3 c92d36a7-2f0b-4ae5-8c43-498e44e1ede5 528a8a5d502b248564f7f157281ee06f {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.RNA-Seq.chimeric.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.chimeric.gdc_realn.bam 34078626 BAM chimeric harmonized CPTAC3 1c90094f-757e-4c86-a22a-35bdc731f7e0 31a984b945fa42a2d1447bdf1b3d86e9 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor"} -C3N-03440.RNA-Seq.genomic.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.genomic.gdc_realn.bam 6120920674 BAM genomic harmonized CPTAC3 35c76e83-8cd6-4063-ab84-62a887a3197f 6ad7935c8c6bca96c4b24bbb1a6f5ce9 {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.RNA-Seq.genomic.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.genomic.gdc_realn.bam 9811573427 BAM genomic harmonized CPTAC3 058f4a41-89d7-480f-89d1-0327e8d278df 63569727f0cb626352cb32b3c0c7e983 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor"} -C3N-03440.RNA-Seq.S10_L003_R1.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R1_001.fastq.gz 2696677218 FASTQ S10_L003_R1 unaligned CPTAC3 f74f07bc-dcde-4f6e-a8e6-97dccda7aaaa a284295ea46ca4c306207a3cd4279ec9 {"aliquot_tag": "ALQ_ffb88fa1", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.RNA-Seq.S10_L003_R2.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R2_001.fastq.gz 2942208621 FASTQ S10_L003_R2 unaligned CPTAC3 4b27f03b-37e8-4cd4-bb29-6f9dd2f88a49 0bc62fed98f156868a3f41e293673b1e {"aliquot_tag": "ALQ_ffb88fa1", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.RNA-Seq.S8_L002_R1.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 4462547960 FASTQ S8_L002_R1 unaligned CPTAC3 4ad2b663-f29f-4a07-a7a9-f8875933d4c6 35f54179ca8176fa1ea3166332cfdab9 {"aliquot_tag": "ALQ_3f675193", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03440.RNA-Seq.S8_L002_R2.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 5131330458 FASTQ S8_L002_R2 unaligned CPTAC3 37012691-a5d6-461e-b40f-39ea45f9d68a 9929dbe871a50c7de6c9af8d400e3593 {"aliquot_tag": "ALQ_3f675193", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03440.RNA-Seq.transcriptome.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.transcriptome.gdc_realn.bam 7359376506 BAM transcriptome harmonized CPTAC3 b242e4d6-c20f-40fb-907a-560ab72a8d34 ec15a52aead2d1d38074b04f78a24749 {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.RNA-Seq.transcriptome.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.transcriptome.gdc_realn.bam 13467255123 BAM transcriptome harmonized CPTAC3 6d290755-02a3-4116-9d29-674a00336157 d9342c75999370d5ffeca16eae45a9f4 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor"} -C3N-03440.WGS.N C3N-03440 PDA WGS blood_normal CPT0246250002 CPT0246250002.WholeGenome.RP-1303.bam 62651712138 BAM aligned CPTAC3 8356683a-24bf-4f4f-ac01-7a256165f422 8f69b7517ea52abec65f5fc07da84133 {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal"} -C3N-03440.WGS.N.hg38 C3N-03440 PDA WGS blood_normal CPT0246250002 c68f9ca9-8f35-4ff1-a751-cc6afeb6fc44_wgs_gdc_realn.bam 91303283275 BAM harmonized CPTAC3 8cece330-211e-49f6-a73c-7e189c52206c 6bb9844a264a24075688ce92da4d5d35 {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal"} -C3N-03440.WGS.T C3N-03440 PDA WGS tumor CPT0246210010 CPT0246210010.WholeGenome.RP-1303.bam 160900045068 BAM aligned CPTAC3 9c65fb69-2791-4a29-928c-9867ff04f2c5 7f83588818d8d92c1acf6cb301a8ae7c {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor"} -C3N-03440.WGS.T.hg38 C3N-03440 PDA WGS tumor CPT0246210010 0ae21f34-235f-468e-99c1-0c845c5f03ed_wgs_gdc_realn.bam 233491420625 BAM harmonized CPTAC3 2c0b860c-475e-4ad5-a1be-b8c56a295a5b 0f8982585771d7e9e514cabfe30e33f8 {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor"} -C3N-03440.WXS.A C3N-03440 PDA WXS tissue_normal CPT0246220007 CPT0246220007.WholeExome.RP-1303.bam 23886695329 BAM aligned CPTAC3 ba806666-5838-49ca-a8e1-09401e24f205 f99a5c17a74da871703cf8e74023af22 {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.WXS.A.hg38 C3N-03440 PDA WXS tissue_normal CPT0246220007 ccf21103-12a9-42a7-a7a4-ce6c5f53c291_wxs_gdc_realn.bam 32876188538 BAM harmonized CPTAC3 771725ef-0b97-4f55-9097-9ab1bf5b968d c96f0e12946f5b39fc1125c43ec7f8ed {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03440.WXS.N C3N-03440 PDA WXS blood_normal CPT0246250002 CPT0246250002.WholeExome.RP-1303.bam 34236952130 BAM aligned CPTAC3 647a878b-0300-4d9b-bbd9-e830884be721 fbdab3f35c174914cfe38b3fe5748c32 {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal"} -C3N-03440.WXS.N.hg38 C3N-03440 PDA WXS blood_normal CPT0246250002 c68f9ca9-8f35-4ff1-a751-cc6afeb6fc44_wxs_gdc_realn.bam 47803365342 BAM harmonized CPTAC3 11cb649f-3017-41d3-85bb-ed5fe75a3603 138112051ef0e952dbf7bd5070aecbff {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal"} -C3N-03440.WXS.T C3N-03440 PDA WXS tumor CPT0246210010 CPT0246210010.WholeExome.RP-1303.bam 43307235364 BAM aligned CPTAC3 e33d795d-4d14-4c05-8235-72805d22e0ec b981857a5a58559818416faa623c04eb {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor"} -C3N-03440.WXS.T.hg38 C3N-03440 PDA WXS tumor CPT0246210010 0ae21f34-235f-468e-99c1-0c845c5f03ed_wxs_gdc_realn.bam 59331845422 BAM harmonized CPTAC3 6b15040e-ce60-40e4-b233-a07f708e13d5 4fd714b6f774fbb78ab662de2570dbec {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor"} -C3N-03441.MethArray.Green.A C3N-03441 LSCC Methylation_Array tissue_normal CPT0245890006 203219650221_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9869303c-e56b-4a3a-8b85-4dbc4d6c1e74 9f12bf103c392b42ce01aa112783e360 {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.MethArray.Green.T C3N-03441 LSCC Methylation_Array tumor CPT0245880006 203219640047_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 6b7746e8-3420-48fd-8bfa-e9aeaf15be07 2304e358c80e7599771bdf9cf00a2429 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor"} -C3N-03441.MethArray.Red.A C3N-03441 LSCC Methylation_Array tissue_normal CPT0245890006 203219650221_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 ea0cc90b-ebaf-42b2-a492-d729818e5545 02364dc69653865ede315d03453fff21 {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.MethArray.Red.T C3N-03441 LSCC Methylation_Array tumor CPT0245880006 203219640047_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 c525c6cf-8b02-4de9-95f7-4ad21ff7838c ff0613ddbe54e43e810b27655ab6e307 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor"} -C3N-03441.miRNA-Seq.A.hg38 C3N-03441 LSCC miRNA-Seq tissue_normal CPT0245890009 9a2b708e-ddf4-4474-8520-eff80ba115ac_mirnaseq_gdc_realn.bam 234555214 BAM harmonized CPTAC3 82779b45-1279-4e11-92bb-c1bd36fc5f9a f742bf99346a7d4f3bc2fe5afca8cc7d {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.miRNA-Seq.S29_L004_R1.A C3N-03441 LSCC miRNA-Seq tissue_normal CPT0245890009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGGCC_S29_L004_R1_001.unaln.bam 213078044 BAM S29_L004_R1 unaligned CPTAC3 97860360-fa2b-45d1-ba6b-40749d81ffca 5e341e6622924e728b18ce01a095f33a {"aliquot_tag": "ALQ_78dc0eae", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.miRNA-Seq.S30_L004_R1.T C3N-03441 LSCC miRNA-Seq tumor CPT0245880009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGAAA_S30_L004_R1_001.unaln.bam 172088121 BAM S30_L004_R1 unaligned CPTAC3 0703f7e6-7af2-4561-ae38-7b8ff7868ef6 0ee23c0eed13ca497b5ef142d7c2d57b {"aliquot_tag": "ALQ_45bc271e", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03441.miRNA-Seq.T.hg38 C3N-03441 LSCC miRNA-Seq tumor CPT0245880009 741a2a7a-3f4e-4b72-bb89-fedb87a19526_mirnaseq_gdc_realn.bam 192020106 BAM harmonized CPTAC3 6fddab11-686d-4c9c-85fb-b55bed6a66d1 33045f30de0ec387d3590d1ef4dc46cc {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor"} -C3N-03441.RNA-Seq.chimeric.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.chimeric.gdc_realn.bam 213189618 BAM chimeric harmonized CPTAC3 be23c486-6448-4617-bf0c-5f9a30aa5b10 502091f4a0380c76c95a8b03a672ef36 {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.RNA-Seq.chimeric.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.chimeric.gdc_realn.bam 238270411 BAM chimeric harmonized CPTAC3 befbb703-172d-43c6-b5f8-e624b5c546bc 4eca5a693753c31f88ca7a5438db8f5e {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor"} -C3N-03441.RNA-Seq.genomic.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.genomic.gdc_realn.bam 7729759537 BAM genomic harmonized CPTAC3 e17f08bd-a155-4317-bef8-485fc12b6586 c210efd59f05e6be35fd8ebbe40d386f {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.RNA-Seq.genomic.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.genomic.gdc_realn.bam 10003188284 BAM genomic harmonized CPTAC3 5d47b10f-b838-4bb0-acf5-84a82a0b70c0 6bc223012113825440c5e8318e53646a {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor"} -C3N-03441.RNA-Seq.S10_L003_R1.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 4845477485 FASTQ S10_L003_R1 unaligned CPTAC3 f1885822-bba2-4b9d-be2d-ff1092f16edf 49ebb917a6bccdc17af1828a816d501e {"aliquot_tag": "ALQ_45bc271e", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03441.RNA-Seq.S10_L003_R2.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 5285164029 FASTQ S10_L003_R2 unaligned CPTAC3 5ade9763-0f5d-46d5-93bc-8dab152f682d 586fd37271d79428e449c5de7d595e6b {"aliquot_tag": "ALQ_45bc271e", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03441.RNA-Seq.S15_L004_R1.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R1_001.fastq.gz 3544778049 FASTQ S15_L004_R1 unaligned CPTAC3 211d898b-61a9-44a6-9eda-23a3f4397456 7d5f140c3cc5ebb0e54bac29466cc795 {"aliquot_tag": "ALQ_78dc0eae", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.RNA-Seq.S15_L004_R2.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R2_001.fastq.gz 4021739315 FASTQ S15_L004_R2 unaligned CPTAC3 be7e2f2d-13b5-4a91-b15b-4f9e3aeec7f6 a666fd447f20b110df2e06b29e6717c6 {"aliquot_tag": "ALQ_78dc0eae", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.RNA-Seq.transcriptome.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.transcriptome.gdc_realn.bam 8738975040 BAM transcriptome harmonized CPTAC3 e280cf77-97c7-463f-bd05-d2195ae5d31f 0d0dbc0a8ef55f18291f414fb9a2a01c {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.RNA-Seq.transcriptome.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.transcriptome.gdc_realn.bam 11925607780 BAM transcriptome harmonized CPTAC3 879c1719-2a1b-4138-8f22-90b9c7069f1d c87045bfcc6f0b217f7034017ac70254 {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor"} -C3N-03441.WGS.N C3N-03441 LSCC WGS blood_normal CPT0245920002 CPT0245920002.WholeGenome.RP-1303.bam 59342808443 BAM aligned CPTAC3 a4c31365-e18a-485d-af8e-9a50fe6d2929 abe7f354f2676bb1a5f5dc928c7fcc2b {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal"} -C3N-03441.WGS.N.hg38 C3N-03441 LSCC WGS blood_normal CPT0245920002 44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wgs_gdc_realn.bam 86480227712 BAM harmonized CPTAC3 c4a33c7d-e943-4289-bb44-762582ab397a 10d22b0f871042a533b330a98660660b {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal"} -C3N-03441.WGS.T C3N-03441 LSCC WGS tumor CPT0245880006 CPT0245880006.WholeGenome.RP-1303.bam 58519056636 BAM aligned CPTAC3 03e5abb4-f69f-4fb2-9f86-9445c476e832 bd00f48da928d4349dbbf4aa25282544 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor"} -C3N-03441.WGS.T.hg38 C3N-03441 LSCC WGS tumor CPT0245880006 32dd99c7-d21a-4c9d-903f-b3b270af7c81_wgs_gdc_realn.bam 85389508692 BAM harmonized CPTAC3 cdd04a83-a463-4d47-b3fb-c271eea57054 bd76c92f544e970c7c04c1c2ecc6a88e {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor"} -C3N-03441.WXS.A C3N-03441 LSCC WXS tissue_normal CPT0245890006 CPT0245890006.WholeExome.RP-1303.bam 21563172687 BAM aligned CPTAC3 084479aa-45ab-4266-bb8e-9f714cdfc452 ef486c3491a56e23905e3fa49bcfee1a {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.WXS.A.hg38 C3N-03441 LSCC WXS tissue_normal CPT0245890006 ff57d2ae-9f3e-411e-9cb6-729ff384ab20_wxs_gdc_realn.bam 30489695650 BAM harmonized CPTAC3 3a982043-1641-484b-b13e-1227f7d5e502 398b31c3d318fce9bf026ed04e0b6b10 {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03441.WXS.N C3N-03441 LSCC WXS blood_normal CPT0245920002 CPT0245920002.WholeExome.RP-1303.bam 26498209763 BAM aligned CPTAC3 0cbeb5a3-ed6b-4c53-a897-1b5177d2de38 c30dd24060f7bee4f1c2fd5486d2cbf1 {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal"} -C3N-03441.WXS.N.hg38 C3N-03441 LSCC WXS blood_normal CPT0245920002 44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wxs_gdc_realn.bam 36840432967 BAM harmonized CPTAC3 b67c36c7-c280-4ffb-b911-f4f2e1f5a46f 446df57341de18744f54f9c67459cbd6 {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal"} -C3N-03441.WXS.T C3N-03441 LSCC WXS tumor CPT0245880006 CPT0245880006.WholeExome.RP-1303.bam 21758719610 BAM aligned CPTAC3 1a0b9c25-b730-4fa5-b004-c9e154c64d30 7f02a2ca9e0f5675bd901f3f4bae8d75 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor"} -C3N-03441.WXS.T.hg38 C3N-03441 LSCC WXS tumor CPT0245880006 32dd99c7-d21a-4c9d-903f-b3b270af7c81_wxs_gdc_realn.bam 29923883050 BAM harmonized CPTAC3 06361eff-ad77-40ec-8141-7488907e2522 8979fb2d7165ce7e03f703f92d27d8af {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor"} -C3N-03446.MethArray.Green.A C3N-03446 GBM Methylation_Array tissue_normal CPT0404840014 205555390119_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 88d36cbf-69a2-4b05-ab54-8493bf8b254c b5dac09dd7986296fb538705cb293b38 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.MethArray.Red.A C3N-03446 GBM Methylation_Array tissue_normal CPT0404840014 205555390119_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 22efb14e-4b7e-4e1e-8a0a-4ead7b9d513e 27789f0a5e69044fb22353e0d1773e83 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.miRNA-Seq.A.hg38 C3N-03446 GBM miRNA-Seq tissue_normal CPT0404840017 49b74a33-dcd8-4fe6-ac80-93633aeefa24_mirnaseq_gdc_realn.bam 338824392 BAM harmonized CPTAC3 3dabf648-bda9-45e7-b7dd-35dd422dbba5 fb93f1f2bb9cf90ec2e016e19bfdaa36 {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.miRNA-Seq.S36_L005_R1.A C3N-03446 GBM miRNA-Seq tissue_normal CPT0404840017 210702_UNC32-K00270_0289_AHKJ22BBXY_TATAAT_S36_L005_R1_001.unaln.bam 316093048 BAM S36_L005_R1 unaligned CPTAC3 26c61e95-8e69-4aac-8093-f950400fac1e 3ce29dce686d5d5a92493516b4475564 {"aliquot_tag": "ALQ_2fc8aa9d", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.RNA-Seq.chimeric.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.chimeric.gdc_realn.bam 344655729 BAM chimeric harmonized CPTAC3 1c88c488-f89d-49cf-a806-2b01bb1bc07c 73c61e0a58771825b098a3441b14d84d {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.RNA-Seq.genomic.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.genomic.gdc_realn.bam 8685139216 BAM genomic harmonized CPTAC3 1fc41680-8893-44e4-9c54-4d3eda319053 0c369044438f39893f67321c36760dc1 {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.RNA-Seq.S15_L004_R1.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ S15_L004_R1 unaligned CPTAC3 5a9e30f7-2202-4950-a643-61f2b2a1579d d80f04a2683316e2659b06508edc4196 {"aliquot_tag": "ALQ_2fc8aa9d", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.RNA-Seq.S15_L004_R2.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ S15_L004_R2 unaligned CPTAC3 2c66f195-9484-4900-9338-d02c9392ee59 bd04445d03281a0ef5a319f077c4fc8a {"aliquot_tag": "ALQ_2fc8aa9d", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.RNA-Seq.transcriptome.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.transcriptome.gdc_realn.bam 8553390343 BAM transcriptome harmonized CPTAC3 aca75e9b-0f8d-4dfc-a4be-aee908746d60 05b9e0f61fe11eca3d83888d2f519541 {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.WXS.A C3N-03446 GBM WXS tissue_normal CPT0404840014 CPT0404840014.WholeExome.RP-1303.bam 22291412082 BAM aligned CPTAC3 faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af 96990bbca730a0929138c7ebf0f03f09 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03446.WXS.A.hg38 C3N-03446 GBM WXS tissue_normal CPT0404840014 2ffb059e-abc1-48e4-8d8f-de903f6cabe3_wxs_gdc_realn.bam 31302407798 BAM harmonized CPTAC3 6bc6c3bf-8a28-46ab-9f0c-188e00dc39b7 711f48de972f17317d486ef53ef94519 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03448.MethArray.Green.T C3N-03448 GBM Methylation_Array tumor CPT0225870006 204372030127_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0695eb5d-f8ff-4fa1-88ea-e2b4348583f1 8748ce07993cb7e7e05e622a8502101a {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor"} -C3N-03448.MethArray.Red.T C3N-03448 GBM Methylation_Array tumor CPT0225870006 204372030127_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 58b8baf0-e2d0-4d78-b683-175aa024940f ce8441014e6623091a86ab6082bf0661 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor"} -C3N-03448.miRNA-Seq.S35_L008_R1.T C3N-03448 GBM miRNA-Seq tumor CPT0225870013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATTTT_S35_L008_R1_001.unaln.bam 301304798 BAM S35_L008_R1 unaligned CPTAC3 ed576d30-32bf-49ac-8c9e-578a83e34954 0248c4f80b6d477a2c8a02d234b212b9 {"aliquot_tag": "ALQ_f84d6117", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03448.miRNA-Seq.T.hg38 C3N-03448 GBM miRNA-Seq tumor CPT0225870013 eeec2ff6-2b25-402c-ad52-d9ab89e5ede0_mirnaseq_gdc_realn.bam 327854229 BAM harmonized CPTAC3 640768a1-ee61-4959-8019-5b652de1bec9 e7975942bb304e5ed73ff7b4ceb777a2 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor"} -C3N-03448.RNA-Seq.chimeric.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.chimeric.gdc_realn.bam 38113010 BAM chimeric harmonized CPTAC3 9969c214-7d4c-4c69-b007-0b5ee9487b64 f2c0a23bcb115933f45e770e197597d7 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor"} -C3N-03448.RNA-Seq.genomic.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.genomic.gdc_realn.bam 7964790003 BAM genomic harmonized CPTAC3 e9cef254-fb6d-4f96-b126-3e948521ae22 9c4b4191944aaeed83d28d67b140ed52 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor"} -C3N-03448.RNA-Seq.S13_L004_R1.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ S13_L004_R1 unaligned CPTAC3 3338a3d1-7dfb-47eb-a5f9-d95dce211972 b62fac399efece5dcebd0e2a1cfe2d27 {"aliquot_tag": "ALQ_f84d6117", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03448.RNA-Seq.S13_L004_R2.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ S13_L004_R2 unaligned CPTAC3 1ed68c0c-2d05-45a3-8479-5b09081e06b3 94ff1c499b7dc256f52514e33feb9ae1 {"aliquot_tag": "ALQ_f84d6117", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03448.RNA-Seq.transcriptome.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.transcriptome.gdc_realn.bam 8207362335 BAM transcriptome harmonized CPTAC3 8b245a9b-9541-4be6-8f9c-6bbbec54becf 3dd74a2ad8405d919c34fc55b40643b8 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor"} -C3N-03448.WGS.N C3N-03448 GBM WGS blood_normal CPT0225890002 CPT0225890002.WholeGenome.RP-2158.bam 26717378576 BAM aligned CPTAC3 28bef61d-1ebb-4e66-8d27-9c253535c98c a7e086d03fa73f5efbdf2b968ffd3413 {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03448.WGS.N.hg38 C3N-03448 GBM WGS blood_normal CPT0225890002 cc3fdea7-e732-40b1-a3c8-76a0a704400b_wgs_gdc_realn.bam 78736410378 BAM harmonized CPTAC3 38086ca8-0290-41a9-8ed4-b7db18d6022f 7d99607de5bfbd14b3bfbf5ea1784ecb {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03448.WGS.T C3N-03448 GBM WGS tumor CPT0225870006 CPT0225870006.WholeGenome.RP-2158.bam 27006538735 BAM aligned CPTAC3 56676a0e-5175-45ec-ad15-48766365d3d9 a21b029924ff3bdce7f04cf947d5bf46 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor"} -C3N-03448.WGS.T.hg38 C3N-03448 GBM WGS tumor CPT0225870006 88b92c30-d2a1-4082-8f8a-74b0c810e12c_wgs_gdc_realn.bam 81360762813 BAM harmonized CPTAC3 b713420f-1781-4045-8984-5ad7e13ee429 ad6ff65698af8878a66bb1c8bee0fbc7 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor"} -C3N-03448.WXS.N C3N-03448 GBM WXS blood_normal CPT0225890002 CPT0225890002.WholeExome.RP-1303.bam 26594326910 BAM aligned CPTAC3 cbda0e56-2b5d-4399-b501-9f8f109f2a11 700bb82df53726479b1a8d4e8cc471a5 {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03448.WXS.N.hg38 C3N-03448 GBM WXS blood_normal CPT0225890002 cc3fdea7-e732-40b1-a3c8-76a0a704400b_wxs_gdc_realn.bam 36135835999 BAM harmonized CPTAC3 d5110845-d1e0-40ec-bb1f-4a579825fd3a 034fb7f530a5a5775787b69d7760b9ea {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03448.WXS.T C3N-03448 GBM WXS tumor CPT0225870006 CPT0225870006.WholeExome.RP-1303.bam 25599255128 BAM aligned CPTAC3 1ed97cb4-7639-4cc6-a9c8-96b394f3f684 8354f579247c603c34b68c81c477984f {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor"} -C3N-03448.WXS.T.hg38 C3N-03448 GBM WXS tumor CPT0225870006 88b92c30-d2a1-4082-8f8a-74b0c810e12c_wxs_gdc_realn.bam 35505337871 BAM harmonized CPTAC3 fbe33cf3-286e-4018-b4a5-0646edd91277 f9f45f86e9589e06ef90d92b55715790 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor"} -C3N-03449.MethArray.Green.T C3N-03449 GBM Methylation_Array tumor CPT0225900006 204372030161_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 da2106f0-deed-4164-b4f3-ea72d4cf40e0 df53605c9ca5ff5c3d8d5ac4532eadd5 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor"} -C3N-03449.MethArray.Red.T C3N-03449 GBM Methylation_Array tumor CPT0225900006 204372030161_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 b56d60b0-d2b6-4aa5-abf5-a748290a9987 d4664862318d7784b09efab7c58b640a {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor"} -C3N-03449.miRNA-Seq.S46_L002_R1.T C3N-03449 GBM miRNA-Seq tumor CPT0225900009 200403_UNC31-K00269_0274_AHCF7GBBXY_CGTACG_S46_L002_R1_001.unaln.bam 195887899 BAM S46_L002_R1 unaligned CPTAC3 ecaf2935-c115-48e2-95b7-cdb322278f82 5aa6f3e0016d098ac3acdcd40fa10b19 {"aliquot_tag": "ALQ_78ffb6fd", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03449.miRNA-Seq.T.hg38 C3N-03449 GBM miRNA-Seq tumor CPT0225900009 4cc2f843-c740-42b7-967a-6a4d834c3d1a_mirnaseq_gdc_realn.bam 212546070 BAM harmonized CPTAC3 22ac38ed-4b1e-4075-9ad1-2b3cbb456f1e c2fa16b573e496b393e44a6bdc8b6c69 {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor"} -C3N-03449.RNA-Seq.chimeric.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.chimeric.gdc_realn.bam 21300651 BAM chimeric harmonized CPTAC3 73575e3c-6fb2-47ff-a820-c71a1e426705 6e7a8193ce252460b6b8d88ffac14308 {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor"} -C3N-03449.RNA-Seq.genomic.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.genomic.gdc_realn.bam 6494197788 BAM genomic harmonized CPTAC3 b06b2113-f39e-4a75-ad96-e95dde4398c8 5e6990e7e88f50ad78822249dfbd8570 {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor"} -C3N-03449.RNA-Seq.S14_L004_R1.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ S14_L004_R1 unaligned CPTAC3 d8df9e03-10b6-41a3-972f-b6038ca02881 e6dc54aa448f276e4089d1ead66c8871 {"aliquot_tag": "ALQ_78ffb6fd", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03449.RNA-Seq.S14_L004_R2.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ S14_L004_R2 unaligned CPTAC3 289921b1-b467-487e-ad93-095bdb3834ce a20a1070426b794a2829f22d7259bf6d {"aliquot_tag": "ALQ_78ffb6fd", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03449.RNA-Seq.transcriptome.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.transcriptome.gdc_realn.bam 8873967452 BAM transcriptome harmonized CPTAC3 8b9343b6-c0be-47cb-960f-c5b776fae50a ff26a2f8b3f34c9cc9f2ae3f34ea76ef {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor"} -C3N-03449.WGS.N C3N-03449 GBM WGS blood_normal CPT0225920002 CPT0225920002.WholeGenome.RP-2158.bam 20948538145 BAM aligned CPTAC3 de4e7d48-94d5-4d04-b1f0-54961182666b 528e6538115761445f72a8fb7f8c816d {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal"} -C3N-03449.WGS.N.hg38 C3N-03449 GBM WGS blood_normal CPT0225920002 42736975-7e8e-49ed-b85f-298eab5e784c_wgs_gdc_realn.bam 63629727764 BAM harmonized CPTAC3 12254d50-a4ec-4853-9b55-6e923e7ad99a 291df2c963457d4e6eaed5edd2cd1712 {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal"} -C3N-03449.WGS.T C3N-03449 GBM WGS tumor CPT0225900006 CPT0225900006.WholeGenome.RP-2158.bam 27759977402 BAM aligned CPTAC3 dee71466-6729-4791-8938-13ae43573976 852ee2c6f47a4683394a11a52dac8e87 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor"} -C3N-03449.WGS.T.hg38 C3N-03449 GBM WGS tumor CPT0225900006 95344601-8d6d-4b58-b23c-2482f039b375_wgs_gdc_realn.bam 82964057648 BAM harmonized CPTAC3 cd651894-4cf9-42a1-a907-d8a88f56d660 a2830840e29acd293ceddb4ecb28d68a {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor"} -C3N-03449.WXS.N C3N-03449 GBM WXS blood_normal CPT0225920002 CPT0225920002.WholeExome.RP-1303.bam 22286780870 BAM aligned CPTAC3 f32cb33d-4283-4ce0-b90f-208b6862f1bb f1c8cdf0b7be9cad3e79f63e257e19c3 {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal"} -C3N-03449.WXS.N.hg38 C3N-03449 GBM WXS blood_normal CPT0225920002 42736975-7e8e-49ed-b85f-298eab5e784c_wxs_gdc_realn.bam 30794323298 BAM harmonized CPTAC3 e9cc9f57-6994-4632-99c3-b7b44deb2f42 e9dff8e28fde0bf67d4b8ffe6bc71144 {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal"} -C3N-03449.WXS.T C3N-03449 GBM WXS tumor CPT0225900006 CPT0225900006.WholeExome.RP-1303.bam 27253392773 BAM aligned CPTAC3 d08b9b23-6040-4abc-8473-a56667167668 5a31cc572dafba9c5fa87bb3eb01fa53 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor"} -C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor CPT0225900006 95344601-8d6d-4b58-b23c-2482f039b375_wxs_gdc_realn.bam 37857968182 BAM harmonized CPTAC3 b2c86b4b-863d-404c-a883-76d1abac071c 620d51edc5d1a2bb815a916b9151fc09 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor"} -C3N-03450.MethArray.Green.A C3N-03450 GBM Methylation_Array tissue_normal CPT0405020008 205555390176_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 02525a6c-2a58-4f70-8f60-85830a087f06 a98e2a1afb45d65b0583efe2db565eb9 {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.MethArray.Red.A C3N-03450 GBM Methylation_Array tissue_normal CPT0405020008 205555390176_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 5c22a10c-66de-4495-869b-009f24631542 fb62472ac967fe7df6c574ef1ff34c6a {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.miRNA-Seq.A.hg38 C3N-03450 GBM miRNA-Seq tissue_normal CPT0405020011 862a48ba-3668-49f2-b179-334cb7943742_mirnaseq_gdc_realn.bam 274951978 BAM harmonized CPTAC3 9045da98-68c0-48dc-bac4-aa656956a136 2292473f0135ce568adbb89b1ceb5070 {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.miRNA-Seq.S38_L005_R1.A C3N-03450 GBM miRNA-Seq tissue_normal CPT0405020011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCCCGA_S38_L005_R1_001.unaln.bam 256334598 BAM S38_L005_R1 unaligned CPTAC3 d2b8b521-7e0c-42d6-a8e2-c43bdd7d1c56 69691bed2249a38919ca3a963cfebd41 {"aliquot_tag": "ALQ_3cf73d1", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.RNA-Seq.chimeric.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.chimeric.gdc_realn.bam 332427868 BAM chimeric harmonized CPTAC3 bbf38c9c-8d71-4398-a707-a6dbfa8a6ce1 c922f38bbf10cf1b68703e806e81b85a {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.RNA-Seq.genomic.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.genomic.gdc_realn.bam 8170300984 BAM genomic harmonized CPTAC3 d3d499c6-ea9b-4b21-ac90-e9b702caef84 fceea54fd137ba677693c4700284051a {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.RNA-Seq.S16_L004_R1.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ S16_L004_R1 unaligned CPTAC3 81a63cde-b0d0-40d8-bd21-4ac99c45f504 2d11f9f036bddf4e4561edcc4a4ece93 {"aliquot_tag": "ALQ_3cf73d1", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.RNA-Seq.S16_L004_R2.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ S16_L004_R2 unaligned CPTAC3 d26762d9-9ed0-4411-85a1-8a6ecfa904a0 99f90c343e5a58fbfdffe3b13f207ab5 {"aliquot_tag": "ALQ_3cf73d1", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.RNA-Seq.transcriptome.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.transcriptome.gdc_realn.bam 9261744425 BAM transcriptome harmonized CPTAC3 c13bc37a-77f0-49e1-b8a8-f17f31ca5937 9dadb23e87050705e5033e76a7ba238e {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.WXS.A C3N-03450 GBM WXS tissue_normal CPT0405020008 CPT0405020008.WholeExome.RP-1303.bam 22154672056 BAM aligned CPTAC3 7498e01b-ef12-4dee-99a0-ab79f64e0119 1f933140b7b02d898638a8279e35d057 {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03450.WXS.A.hg38 C3N-03450 GBM WXS tissue_normal CPT0405020008 ef8782dc-a720-4655-beda-b3b3e47c0772_wxs_gdc_realn.bam 30755140808 BAM harmonized CPTAC3 fddeeebd-f11f-4532-bc45-1a948cac1499 c68e939a32e7f1df5150323f7a69be7c {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.MethArray.Green.T C3N-03452 GBM Methylation_Array tumor CPT0225960006 204372030076_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 bc8ab5ba-51f4-4ff2-9616-8708f899897e 3b21f01780991f8a065b8b6b2eee2574 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor"} -C3N-03452.MethArray.Red.T C3N-03452 GBM Methylation_Array tumor CPT0225960006 204372030076_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 8e4a41b8-214c-475b-b807-329b14932312 cedfee86c5e2ea8066655cbd30a67eba {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor"} -C3N-03452.miRNA-Seq.A.hg38 C3N-03452 GBM miRNA-Seq tissue_normal CPT0405170011 222a1db8-6a56-40a4-824d-93c65e620b7c_mirnaseq_gdc_realn.bam 463966780 BAM harmonized CPTAC3 419627a1-8834-4ca4-8d33-b16b8097cf2d efc540d033bd4ade3cb6dc03b7e38e63 {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.miRNA-Seq.S37_L008_R1.T C3N-03452 GBM miRNA-Seq tumor CPT0225960013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGGAAT_S37_L008_R1_001.unaln.bam 550754421 BAM S37_L008_R1 unaligned CPTAC3 414331cd-a344-4884-b014-b3a7e7a3d082 5eaabd04c5e6fad466731b1c452b2bb5 {"aliquot_tag": "ALQ_e719b02", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03452.miRNA-Seq.S39_L005_R1.A C3N-03452 GBM miRNA-Seq tissue_normal CPT0405170011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCGAAG_S39_L005_R1_001.unaln.bam 419837604 BAM S39_L005_R1 unaligned CPTAC3 1397533b-5753-41d0-b907-ae1a3166f07e 3fc014cf0f0afbd510c37c1280e20b3c {"aliquot_tag": "ALQ_732f04", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.miRNA-Seq.T.hg38 C3N-03452 GBM miRNA-Seq tumor CPT0225960013 43f66e46-99a8-446a-ae78-9fdd0d0e5b4d_mirnaseq_gdc_realn.bam 608275622 BAM harmonized CPTAC3 44aafc75-b3f5-4fff-b65f-c8119d490480 ba1efe868bcb2b37710b3f8f15a54e00 {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor"} -C3N-03452.RNA-Seq.chimeric.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.chimeric.gdc_realn.bam 565072800 BAM chimeric harmonized CPTAC3 7dd13965-d725-479e-a677-2d23d62a4bea 5a3b315a09e3612652103932c33df224 {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.RNA-Seq.chimeric.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.chimeric.gdc_realn.bam 36351452 BAM chimeric harmonized CPTAC3 bbc78eb7-e149-4bc6-9119-26ad006bb79e 121dc7fe3b4fd5a6ac8e64ba9b9205dc {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor"} -C3N-03452.RNA-Seq.genomic.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.genomic.gdc_realn.bam 10990858822 BAM genomic harmonized CPTAC3 110b1509-b14a-4783-abd1-c8da615a301b 05dd02a168c1c76e8fa7aa49c2a2dd6c {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.RNA-Seq.genomic.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.genomic.gdc_realn.bam 8863092903 BAM genomic harmonized CPTAC3 7e7c1a8b-1673-4d45-aa5a-3f456c9f2eec 906074ed05d89e531e3fb44b26c0b710 {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor"} -C3N-03452.RNA-Seq.S15_L004_R1.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ S15_L004_R1 unaligned CPTAC3 bcb5374d-d91f-4617-9a0b-33efb9238a3f e0a81f77e3650dda5d720b648bab8bf4 {"aliquot_tag": "ALQ_e719b02", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03452.RNA-Seq.S15_L004_R2.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ S15_L004_R2 unaligned CPTAC3 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 97c74b84f8570811e77ebd4bf33662bd {"aliquot_tag": "ALQ_e719b02", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03452.RNA-Seq.S9_L003_R1.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ S9_L003_R1 unaligned CPTAC3 0556e930-1904-4780-bf80-cdfba5c577b7 0d1ba4b879fe690597ca4d5dad28c105 {"aliquot_tag": "ALQ_732f04", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.RNA-Seq.S9_L003_R2.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ S9_L003_R2 unaligned CPTAC3 c582f341-273b-490f-9e51-725a98439835 d529cf707545470193394c0d11e8b02d {"aliquot_tag": "ALQ_732f04", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.RNA-Seq.transcriptome.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.transcriptome.gdc_realn.bam 12657134542 BAM transcriptome harmonized CPTAC3 b7eeccde-2059-47ca-a581-8046e7f2bf24 cdcf785fcab621107ddf9f14adff4ad0 {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.RNA-Seq.transcriptome.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.transcriptome.gdc_realn.bam 9890880373 BAM transcriptome harmonized CPTAC3 76a0988d-9708-4c9e-bea2-f33194659a35 1d14989f417ee008299933c051c9c846 {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor"} -C3N-03452.WGS.N C3N-03452 GBM WGS blood_normal CPT0225980002 CPT0225980002.WholeGenome.RP-2158.bam 22971225120 BAM aligned CPTAC3 68708734-7e8f-4ab9-88bb-310161053f46 fce54004bf972fdcd867e312b954dd2e {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03452.WGS.N.hg38 C3N-03452 GBM WGS blood_normal CPT0225980002 3d82230b-c081-4c11-9e1f-aed013981520_wgs_gdc_realn.bam 68800975416 BAM harmonized CPTAC3 cd7df227-d920-4949-8ab7-191412252216 4f4f27e2b036896d32d61b21a4ece33c {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03452.WGS.T C3N-03452 GBM WGS tumor CPT0225960006 CPT0225960006.WholeGenome.RP-2158.bam 28423091199 BAM aligned CPTAC3 1c720dd8-6b46-4f2f-a8a2-603d62919edf 07408cbcfd520563687e50048c7991f2 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor"} -C3N-03452.WGS.T.hg38 C3N-03452 GBM WGS tumor CPT0225960006 c2109dc6-60b3-4bbe-b997-c781791a92c2_wgs_gdc_realn.bam 80891834156 BAM harmonized CPTAC3 285e6dc0-38fe-4ca5-a01c-d4ea82565353 eebaa2495a49ff880a2d89e04eea7897 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor"} -C3N-03452.WXS.A C3N-03452 GBM WXS tissue_normal CPT0405170007 CPT0405170007.WholeExome.RP-1303.bam 29785107966 BAM aligned CPTAC3 85461ad1-223c-4001-b20f-2e1046f69e0c 9c6c1bf56facbbabf0d0af77c9df65d9 {"aliquot_tag": "ALQ_f00bbb70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.WXS.A.hg38 C3N-03452 GBM WXS tissue_normal CPT0405170007 c8b69625-dc76-479e-a092-44803759e648_wxs_gdc_realn.bam 40848147125 BAM harmonized CPTAC3 852d9345-0a27-41a1-b83a-e25e2bf16e18 dece18a32b98d2aca8e69f85775c7f67 {"aliquot_tag": "ALQ_f00bbb70", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03452.WXS.N C3N-03452 GBM WXS blood_normal CPT0225980002 CPT0225980002.WholeExome.RP-1303.bam 22176413678 BAM aligned CPTAC3 58d9dc12-c34c-4698-b5f3-c3f0feb17aaf a550ab37b09fd9a08c96fc532b0a9076 {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03452.WXS.N.hg38 C3N-03452 GBM WXS blood_normal CPT0225980002 3d82230b-c081-4c11-9e1f-aed013981520_wxs_gdc_realn.bam 29962435389 BAM harmonized CPTAC3 72713898-819e-4775-b6e7-8e81a8d14e9e eb94edc5469aa92a993f70a7b0d785c2 {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal"} -C3N-03452.WXS.T C3N-03452 GBM WXS tumor CPT0225960006 CPT0225960006.WholeExome.RP-1303.bam 22236745714 BAM aligned CPTAC3 24342f75-a181-44f5-8cbc-d85dd5e52dd7 0dff0b2e53bb774a6483acd19ef4c87e {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor"} -C3N-03452.WXS.T.hg38 C3N-03452 GBM WXS tumor CPT0225960006 c2109dc6-60b3-4bbe-b997-c781791a92c2_wxs_gdc_realn.bam 31266490554 BAM harmonized CPTAC3 fa9af05c-4ced-4641-9f5d-5b425c0008f2 3c210a850747265056e6f41274cefc65 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor"} -C3N-03453.MethArray.Green.T C3N-03453 GBM Methylation_Array tumor CPT0225990006 204372030074_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 23b4f85c-7359-4026-aaa6-d21609c3e13f 5d78a25fb26c698d919e87aa7d0c33e4 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor"} -C3N-03453.MethArray.Red.T C3N-03453 GBM Methylation_Array tumor CPT0225990006 204372030074_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 efbbbef3-a8fd-412f-9c08-0c0fd72ea9b5 8db90441f98f19fff5bef6c25fb29ee1 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor"} -C3N-03453.miRNA-Seq.S47_L002_R1.T C3N-03453 GBM miRNA-Seq tumor CPT0225990009 200403_UNC31-K00269_0274_AHCF7GBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 223237672 BAM S47_L002_R1 unaligned CPTAC3 6217d0df-86ef-4370-83b8-14a0cbb79c93 e021dda425a7f1253dfd46b062384f68 {"aliquot_tag": "ALQ_75efd48c", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03453.miRNA-Seq.T.hg38 C3N-03453 GBM miRNA-Seq tumor CPT0225990009 31f7f397-5252-408c-9d42-f5b47fb792a2_mirnaseq_gdc_realn.bam 251493832 BAM harmonized CPTAC3 934da61a-31c6-4721-b765-fa396d4d6fb9 d43bef71ce179990a5cb07ebb01a937a {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor"} -C3N-03453.RNA-Seq.chimeric.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.chimeric.gdc_realn.bam 30638775 BAM chimeric harmonized CPTAC3 907291f4-a335-4e75-82cd-806b2861c583 bdf81043a5d92b8b22c0edda9dbd3186 {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor"} -C3N-03453.RNA-Seq.genomic.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.genomic.gdc_realn.bam 7273227313 BAM genomic harmonized CPTAC3 e710115f-f3c4-413d-a74b-094c0ff42b29 d7483e96beb0ad86d99bfc145b9e6791 {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor"} -C3N-03453.RNA-Seq.S15_L004_R1.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ S15_L004_R1 unaligned CPTAC3 a3a1d4f8-d8b2-4e47-be49-bfd4d235448f 079d99c882bd6b518f785c2443b2f67d {"aliquot_tag": "ALQ_75efd48c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03453.RNA-Seq.S15_L004_R2.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ S15_L004_R2 unaligned CPTAC3 d643ac36-a2be-46bd-bcf4-eac66dfe9253 4c3cc69b20daee63f04557ea5545831d {"aliquot_tag": "ALQ_75efd48c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03453.RNA-Seq.transcriptome.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.transcriptome.gdc_realn.bam 7785020997 BAM transcriptome harmonized CPTAC3 5c112587-aacb-4c44-af44-44b548d602df 8ce21ac5fd3102b372e0bb8a38837ae5 {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor"} -C3N-03453.WGS.N C3N-03453 GBM WGS blood_normal CPT0226010002 CPT0226010002.WholeGenome.RP-2158.bam 22150234243 BAM aligned CPTAC3 684bad64-e371-4a9d-8370-e390a5d037fc d34c8ba3d9adb274621976f47cd2df08 {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal"} -C3N-03453.WGS.N.hg38 C3N-03453 GBM WGS blood_normal CPT0226010002 883e62e0-05c1-4b41-9315-d32aa83e8990_wgs_gdc_realn.bam 66079008259 BAM harmonized CPTAC3 668c831a-265b-418f-8444-303ea0d612f0 ada18c68aa85826a9007bd0e69d171dc {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal"} -C3N-03453.WGS.T C3N-03453 GBM WGS tumor CPT0225990006 CPT0225990006.WholeGenome.RP-2158.bam 21511984237 BAM aligned CPTAC3 67e71faf-078b-4b6b-881c-7411be49f4c9 eb0027bbb09bbec77ee849d56c6a43dd {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor"} -C3N-03453.WGS.T.hg38 C3N-03453 GBM WGS tumor CPT0225990006 bce376c8-06f6-4242-a32b-9488f7f4eb82_wgs_gdc_realn.bam 60130960553 BAM harmonized CPTAC3 3ab79ed1-6153-4d61-82c9-191f5573df89 233dfc960658ac299372f971aec70c97 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor"} -C3N-03453.WXS.N C3N-03453 GBM WXS blood_normal CPT0226010002 CPT0226010002.WholeExome.RP-1303.bam 25670725042 BAM aligned CPTAC3 1f9e6366-516d-4bb4-993f-cc7a657b9dba 300093c8e1173ca510b5c8dc0a447f61 {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal"} -C3N-03453.WXS.N.hg38 C3N-03453 GBM WXS blood_normal CPT0226010002 883e62e0-05c1-4b41-9315-d32aa83e8990_wxs_gdc_realn.bam 35687539170 BAM harmonized CPTAC3 fbef702e-4c4b-439b-84df-4f17c09b025d 4a36250ebca4f6d065d0e5f74f8a76e4 {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal"} -C3N-03453.WXS.T C3N-03453 GBM WXS tumor CPT0225990006 CPT0225990006.WholeExome.RP-1303.bam 26650952812 BAM aligned CPTAC3 3e7c70a6-be10-4a69-9f83-8ef515a0d505 64f04855554e54533ea8017654057f18 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor"} -C3N-03453.WXS.T.hg38 C3N-03453 GBM WXS tumor CPT0225990006 bce376c8-06f6-4242-a32b-9488f7f4eb82_wxs_gdc_realn.bam 36876819652 BAM harmonized CPTAC3 c8b4ef77-12ec-4266-a6f6-178327ea0fd0 0088c803eaa74fc93abbd296996a3cea {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor"} -C3N-03456.MethArray.Green.T C3N-03456 HNSCC Methylation_Array tumor CPT0246590006 203220070165_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4088662d-239a-45c8-87e2-972656a71861 72e792156e1c566b6c0bc9b28aabad1e {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor"} -C3N-03456.MethArray.Red.T C3N-03456 HNSCC Methylation_Array tumor CPT0246590006 203220070165_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 d3874dd0-6897-4958-a84f-6ace645aaa99 997d0aa8d06e71cefcffd244d3264f6d {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor"} -C3N-03456.miRNA-Seq.S47_L007_R1.T C3N-03456 HNSCC miRNA-Seq tumor CPT0246590009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L007_R1_001.unaln.bam 164485506 BAM S47_L007_R1 unaligned CPTAC3 b778c9a0-444f-401f-874d-b7b0a7d19561 5a072745d88998827c4ae55cf85d6c73 {"aliquot_tag": "ALQ_f5aa07ed", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03456.miRNA-Seq.T.hg38 C3N-03456 HNSCC miRNA-Seq tumor CPT0246590009 486470c4-9376-4bd6-b49a-79331c742a1d_mirnaseq_gdc_realn.bam 186279149 BAM harmonized CPTAC3 b1f3be00-2c7c-4a52-8487-48b3bfa447f1 9fd0e85bf8d337e141886e8f40607538 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.chimeric.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.chimeric.gdc_realn.bam 35001821 BAM chimeric harmonized CPTAC3 66bbc23a-ff92-47d2-90ae-05ac4a3fc1a1 d0f5d8c99b7b55644fcf24d24016a025 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.chimeric.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.chimeric.gdc_realn.bam 186625232 BAM chimeric harmonized CPTAC3 49ae5a04-96e1-4fe1-8277-b267649cbe1b e5640e56333e49beef81364bf99593c4 {"aliquot_tag": "ALQ_a2d09988", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.genomic.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.genomic.gdc_realn.bam 9820755619 BAM genomic harmonized CPTAC3 dc6ebbe0-caaf-405e-b281-13b6b909aa59 53decffc3a36c41b7fe64a951cf60816 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.genomic.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.genomic.gdc_realn.bam 11418276490 BAM genomic harmonized CPTAC3 6d2c0116-094e-4b83-be25-20108e59cbb6 5751b54e2c146c7c65e1c267323c117a {"aliquot_tag": "ALQ_a2d09988", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.S21_L006_R1.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4617184550 FASTQ S21_L006_R1 unaligned CPTAC3 6085a9b1-f8e8-4e81-ba00-08c1af1349ac d132cf9292feb803e63ed9bb81a39731 {"aliquot_tag": "ALQ_f5aa07ed", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.S21_L006_R2.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 5265494179 FASTQ S21_L006_R2 unaligned CPTAC3 5c8b2f32-7a81-4d56-9858-3807d2936aeb be672979bdf42b2f83aad24d32f8ca4a {"aliquot_tag": "ALQ_f5aa07ed", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.S42_R1.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R1_001.fastq.gz 6182276232 FASTQ S42_R1 unaligned CPTAC3 64dc83e5-eee7-4133-b485-c7f306d12a54 3b0ce3f67aa53d434e457fa3ef44e64a {"aliquot_tag": "ALQ_a2d09988", "sample": "S42", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.S42_R2.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R2_001.fastq.gz 6412251487 FASTQ S42_R2 unaligned CPTAC3 fa4b3bd0-d77d-4d69-8dd4-2e9daea25b3b 672dea212b235b94face9b63836e8a5f {"aliquot_tag": "ALQ_a2d09988", "sample": "S42", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.transcriptome.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.transcriptome.gdc_realn.bam 12325674557 BAM transcriptome harmonized CPTAC3 c2bd6155-14b0-4b1e-b741-f31b9679eeeb 3df3a6630a4c84201fd6800f7d02e6c7 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor"} -C3N-03456.RNA-Seq.transcriptome.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.transcriptome.gdc_realn.bam 6282617376 BAM transcriptome harmonized CPTAC3 890b2c8f-d5e8-4b75-ad3b-8f194bc70537 85cc14ebc62474e3449a08d03188fe62 {"aliquot_tag": "ALQ_a2d09988", "gdc_sample_type": "Primary Tumor"} -C3N-03456.WGS.N C3N-03456 HNSCC WGS blood_normal CPT0246610002 CPT0246610002.WholeGenome.RP-1303.bam 58166684155 BAM aligned CPTAC3 935cc056-bf48-4b8d-b2b1-a8d5ecac6f23 49cbaaf420a7e84893eea95b7fbc3436 {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03456.WGS.N.hg38 C3N-03456 HNSCC WGS blood_normal CPT0246610002 055a4b03-332d-40b4-ac7e-eb2e3b16fa1d_wgs_gdc_realn.bam 85813441679 BAM harmonized CPTAC3 447c307a-c8bd-45ef-aaac-b7c10fa8b9e8 6190075a90bc067f28fab249a9d56ed9 {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03456.WGS.T C3N-03456 HNSCC WGS tumor CPT0246590006 CPT0246590006.WholeGenome.RP-1303.bam 66859792967 BAM aligned CPTAC3 e960e706-54ac-4fb9-a67d-c9fc9587c0cf edfdf3eaa1a1c9813116f12aeb4f6746 {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor"} -C3N-03456.WGS.T.hg38 C3N-03456 HNSCC WGS tumor CPT0246590006 62e37b70-37a3-4ffd-a5b7-df6b75dedd16_wgs_gdc_realn.bam 97145742159 BAM harmonized CPTAC3 117f1ac9-604f-4717-801a-ccc39b529b79 1c1675bce456e4a87c3a6f1337c0558d {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor"} -C3N-03456.WXS.N C3N-03456 HNSCC WXS blood_normal CPT0246610002 CPT0246610002.WholeExome.RP-1303.bam 24406159610 BAM aligned CPTAC3 39f2751a-afcb-46da-b715-8b154519ae54 3fbb22e1af596c450c464efa62ca5072 {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03456.WXS.N.hg38 C3N-03456 HNSCC WXS blood_normal CPT0246610002 055a4b03-332d-40b4-ac7e-eb2e3b16fa1d_wxs_gdc_realn.bam 33933178321 BAM harmonized CPTAC3 6b489bea-2192-48d0-a36e-b9a10f6cfad6 f7c20cd389d68931aaff4ba121cb31ec {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03456.WXS.T C3N-03456 HNSCC WXS tumor CPT0246590006 CPT0246590006.WholeExome.RP-1303.bam 24092361978 BAM aligned CPTAC3 b6e7f577-d94d-4860-8839-2f30afecd9fa 432c7b10967bb8f76cd3adbdacd3a413 {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor"} -C3N-03456.WXS.T.hg38 C3N-03456 HNSCC WXS tumor CPT0246590006 62e37b70-37a3-4ffd-a5b7-df6b75dedd16_wxs_gdc_realn.bam 33433664540 BAM harmonized CPTAC3 45e87e7c-2758-45f6-a42f-3199e5f2c846 5f2749b256348c0b08bf468a2e1387d1 {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor"} -C3N-03457.MethArray.Green.T C3N-03457 HNSCC Methylation_Array tumor CPT0246620006 203271750057_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1ae9b99a-20db-42bb-ba2e-1205e0c26bc3 15cdace7f58a2dc70a197556492bb307 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor"} -C3N-03457.MethArray.Red.T C3N-03457 HNSCC Methylation_Array tumor CPT0246620006 203271750057_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 637871b5-06fc-423b-a201-fba8c2c843fb 1faff30336af14057a6958daeb12604b {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor"} -C3N-03457.miRNA-Seq.S48_L007_R1.T C3N-03457 HNSCC miRNA-Seq tumor CPT0246620009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGGCA_S48_L007_R1_001.unaln.bam 227965242 BAM S48_L007_R1 unaligned CPTAC3 31f2163e-fdff-4bff-bab8-4d8564b9a2c8 aab960e4f3b19bda51afbea3dd498dee {"aliquot_tag": "ALQ_4ee4452", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03457.miRNA-Seq.T.hg38 C3N-03457 HNSCC miRNA-Seq tumor CPT0246620009 00aae4f8-a1e3-4267-8fc2-fa3d65da7eed_mirnaseq_gdc_realn.bam 256784656 BAM harmonized CPTAC3 0cdff7b3-a296-43a9-bf1e-1dfd8c744328 41c4bfd9c1245d31bdacbef19b8b0b75 {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor"} -C3N-03457.RNA-Seq.chimeric.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.chimeric.gdc_realn.bam 30504430 BAM chimeric harmonized CPTAC3 eb61e4f5-0799-4c58-8533-a79d2a353fa0 8fb081168cb01f1a5d83f2b5ae4a7bd7 {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor"} -C3N-03457.RNA-Seq.genomic.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.genomic.gdc_realn.bam 8771237936 BAM genomic harmonized CPTAC3 80059542-75d4-422e-8709-8a666cb31296 7bbea65952d26a8a2b71d1d6c6b34e97 {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor"} -C3N-03457.RNA-Seq.S24_L006_R1.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3748215230 FASTQ S24_L006_R1 unaligned CPTAC3 f7af8364-202b-466a-b987-dcbc6df0dec0 0cccbc147fc0ef89287bd22b8b72d8ac {"aliquot_tag": "ALQ_4ee4452", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03457.RNA-Seq.S24_L006_R2.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 4399821792 FASTQ S24_L006_R2 unaligned CPTAC3 1b5893e7-fe61-4378-8ca9-12d8ef625be6 c30057e7644bdb7dcae35372f5776dd9 {"aliquot_tag": "ALQ_4ee4452", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03457.RNA-Seq.transcriptome.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.transcriptome.gdc_realn.bam 9839170819 BAM transcriptome harmonized CPTAC3 ccc6dafb-2ae6-4b62-a5ea-f5e2335b61f7 ab55212916dc912125551999bfbaa8ed {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor"} -C3N-03457.WGS.N C3N-03457 HNSCC WGS blood_normal CPT0246660002 CPT0246660002.WholeGenome.RP-1303.bam 69172588605 BAM aligned CPTAC3 5872afd7-a53c-4b24-ba62-7603baf1a162 75967ac760604750227b28b37613556b {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03457.WGS.N.hg38 C3N-03457 HNSCC WGS blood_normal CPT0246660002 782f1f40-ac9f-4746-9394-6fbbedbbd497_wgs_gdc_realn.bam 100076827056 BAM harmonized CPTAC3 1ed44b0b-1953-4fd4-9277-ff6cefa026b6 46688d6b5a8ed4a78f23d99284155f26 {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03457.WGS.T C3N-03457 HNSCC WGS tumor CPT0246620006 CPT0246620006.WholeGenome.RP-1303.bam 76024676952 BAM aligned CPTAC3 8360929a-3660-4f06-8a26-a045b7d866c3 d192d8b6fb7831e82e780ad3cca9f1c6 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor"} -C3N-03457.WGS.T.hg38 C3N-03457 HNSCC WGS tumor CPT0246620006 89ddab47-0889-4961-a2ef-3fd457b12f13_wgs_gdc_realn.bam 111436178743 BAM harmonized CPTAC3 7667ccbe-cba6-4af4-9d59-ff1fb5c1a577 8ab810f11f2c21a13302df909b66c4f2 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor"} -C3N-03457.WXS.N C3N-03457 HNSCC WXS blood_normal CPT0246660002 CPT0246660002.WholeExome.RP-1303.bam 22976599508 BAM aligned CPTAC3 cbfda6ff-aefe-4d4b-9afb-1ef035bb58ff eae499d1f2b376423d1fcafe6b79ddfc {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03457.WXS.N.hg38 C3N-03457 HNSCC WXS blood_normal CPT0246660002 782f1f40-ac9f-4746-9394-6fbbedbbd497_wxs_gdc_realn.bam 31748767184 BAM harmonized CPTAC3 c7aabc26-8d4f-494f-a28c-7709a79cf2c6 a7a2242838d134386cbdcd81912f834f {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03457.WXS.T C3N-03457 HNSCC WXS tumor CPT0246620006 CPT0246620006.WholeExome.RP-1303.bam 23244514198 BAM aligned CPTAC3 bd032d7f-9254-485d-8d84-144d9e874acb 25ebafe99ebef5214878d5036b2a16f6 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor"} -C3N-03457.WXS.T.hg38 C3N-03457 HNSCC WXS tumor CPT0246620006 89ddab47-0889-4961-a2ef-3fd457b12f13_wxs_gdc_realn.bam 31518114519 BAM harmonized CPTAC3 157330db-124b-453b-ba1a-d686b190028a b4b85b6480c3ae0ee068f4bfc70231ac {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor"} -C3N-03458.MethArray.Green.T C3N-03458 HNSCC Methylation_Array tumor CPT0246670006 203219650047_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 82f7f965-a69b-4f9a-b03c-5943ddd893d0 812da419a76529b309d2c508aef20fa2 {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03458.MethArray.Red.T C3N-03458 HNSCC Methylation_Array tumor CPT0246670006 203219650047_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 0a93943e-259e-4faf-8463-d047ccacc27b 6d0f5d22d90acfd5162065a93e5c3c8b {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03458.miRNA-Seq.S138_L008_R1.T C3N-03458 HNSCC miRNA-Seq tumor CPT0246670009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATCACG_S138_L008_R1_001.unaln.bam 331841482 BAM S138_L008_R1 unaligned CPTAC3 c258fa3a-534f-4227-b953-17e4c822dda0 0bc041eeec670f547572cc7e8e502812 {"aliquot_tag": "ALQ_cc0ecb22", "sample": "S138", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03458.miRNA-Seq.T.hg38 C3N-03458 HNSCC miRNA-Seq tumor CPT0246670009 399432c2-1352-4506-87a4-17cf3855b284_mirnaseq_gdc_realn.bam 362078155 BAM harmonized CPTAC3 eecec5ca-bf3c-4a73-ab36-ca63704b3ad0 e479d4e3a314b2a077dda71c8624373b {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor"} -C3N-03458.RNA-Seq.chimeric.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.chimeric.gdc_realn.bam 23496198 BAM chimeric harmonized CPTAC3 7a679e02-355b-403d-b418-43b6f033037a 00232c39697f2f5adf63095707a8e92c {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor"} -C3N-03458.RNA-Seq.genomic.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.genomic.gdc_realn.bam 6970501903 BAM genomic harmonized CPTAC3 80bc30c7-15e5-4cdc-976f-ba4bd71d01db 7b6b0f6f3af072999e406feb09c16b5b {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor"} -C3N-03458.RNA-Seq.S46_L008_R1.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R1_001.fastq.gz 3395284766 FASTQ S46_L008_R1 unaligned CPTAC3 47bc105c-a6cc-4b35-bfef-3332376921aa c4c55ab0554e6bf1be0765439d966ed1 {"aliquot_tag": "ALQ_cc0ecb22", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03458.RNA-Seq.S46_L008_R2.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R2_001.fastq.gz 3766041512 FASTQ S46_L008_R2 unaligned CPTAC3 cd09e850-f5ef-483a-9508-981fe9bf29d4 a5bc971d52722f95bb226957775de659 {"aliquot_tag": "ALQ_cc0ecb22", "sample": "S46", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03458.RNA-Seq.transcriptome.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.transcriptome.gdc_realn.bam 10688708421 BAM transcriptome harmonized CPTAC3 8832b0a1-9947-4ae7-83c1-b028ead9afa9 cf133e4004d26d26622e4c7da121c3ef {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor"} -C3N-03458.WGS.N C3N-03458 HNSCC WGS blood_normal CPT0246710002 CPT0246710002.WholeGenome.RP-1303.bam 66045519817 BAM aligned CPTAC3 dc9950a2-7958-4ad1-9f20-afaa95c71543 374d1586876fc23f648861214b9a6c27 {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal"} -C3N-03458.WGS.N.hg38 C3N-03458 HNSCC WGS blood_normal CPT0246710002 dfd8f485-55b8-4973-9abb-f79f190eddb3_wgs_gdc_realn.bam 96138335271 BAM harmonized CPTAC3 32e5ae7d-3837-4869-91fd-3b2d8fe81e47 92f90bdbd312c5716be7cc52584803ee {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal"} -C3N-03458.WGS.T C3N-03458 HNSCC WGS tumor CPT0246670006 CPT0246670006.WholeGenome.RP-1303.bam 67558830662 BAM aligned CPTAC3 8290ad14-2418-48bb-b2b7-e5e83a4d8c2e 569c1ca436910ae50a10e844ebd2efb4 {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03458.WGS.T.hg38 C3N-03458 HNSCC WGS tumor CPT0246670006 65378d04-9290-4314-80ef-7fa63d18b0dc_wgs_gdc_realn.bam 100007528435 BAM harmonized CPTAC3 8987d7e9-7966-4572-b5a0-171ba7140299 31b62210bf82aaf11aa89f9ab31e8ffe {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03458.WXS.N C3N-03458 HNSCC WXS blood_normal CPT0246710002 CPT0246710002.WholeExome.RP-1303.bam 23056985812 BAM aligned CPTAC3 210334df-abfc-4400-9ec8-268af19e6f89 24f6170c5b5806f7ae2374e3b8b3678b {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal"} -C3N-03458.WXS.N.hg38 C3N-03458 HNSCC WXS blood_normal CPT0246710002 dfd8f485-55b8-4973-9abb-f79f190eddb3_wxs_gdc_realn.bam 32044180290 BAM harmonized CPTAC3 020efae6-7be3-43a3-9e6a-2b51324b1098 36853b50904c9da275cb23a5a88ec2f6 {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal"} -C3N-03458.WXS.T C3N-03458 HNSCC WXS tumor CPT0246670006 CPT0246670006.WholeExome.RP-1303.bam 25574510496 BAM aligned CPTAC3 f62766ec-5d2c-4b87-8c0c-d992490468b8 749ceb07d8fc3ea49f112b4d8d54f5cc {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03458.WXS.T.hg38 C3N-03458 HNSCC WXS tumor CPT0246670006 65378d04-9290-4314-80ef-7fa63d18b0dc_wxs_gdc_realn.bam 35724000491 BAM harmonized CPTAC3 baad83c2-5991-4892-8503-d1b8a2f142eb 18a06aaff7e587bb4549de9d66cebcaf {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03473.MethArray.Green.T C3N-03473 GBM Methylation_Array tumor CPT0207090009 203220070156_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e9e45a65-cf58-4c9a-9c52-6fa08957ae05 a174b16122b6a709de828e15d6364017 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor"} -C3N-03473.MethArray.Red.T C3N-03473 GBM Methylation_Array tumor CPT0207090009 203220070156_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 050debbd-3a69-4934-b17e-287ec39afaec 7a9ccd9666e8873603c2f4044ce85176 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor"} -C3N-03473.miRNA-Seq.S17_L008_R1.T C3N-03473 GBM miRNA-Seq tumor CPT0207090013 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L008_R1_001.unaln.bam 291905505 BAM S17_L008_R1 unaligned CPTAC3 862a751e-660a-4e52-b883-a75db29c282f 6fe2e09f4ed3613360ee0aba814a0593 {"aliquot_tag": "ALQ_7e944b4f", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03473.miRNA-Seq.T.hg38 C3N-03473 GBM miRNA-Seq tumor CPT0207090013 90374924-d0c7-4af0-a381-c7eae572c0f7_mirnaseq_gdc_realn.bam 328145277 BAM harmonized CPTAC3 b0b694b2-1706-4210-9a09-e24b4a8436b0 7bab682da603e55ba5132d461152ba97 {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor"} -C3N-03473.RNA-Seq.chimeric.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.chimeric.gdc_realn.bam 43292689 BAM chimeric harmonized CPTAC3 81f3694c-aa79-4eda-a3c8-78583f676a39 7172089730f41ea0a96366a18e26917e {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor"} -C3N-03473.RNA-Seq.genomic.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.genomic.gdc_realn.bam 7262570903 BAM genomic harmonized CPTAC3 b22810fd-6f7a-4fd6-a053-48c78f5ed8d5 0b687fe47d80cf0ad0422f59b9c4fe32 {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor"} -C3N-03473.RNA-Seq.S4_L005_R1.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R1_001.fastq.gz 3530475490 FASTQ S4_L005_R1 unaligned CPTAC3 4bd3819d-93da-4567-928b-f5927ac9e1d4 2790e589d9d98a1f10cbfe140ef63176 {"aliquot_tag": "ALQ_7e944b4f", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03473.RNA-Seq.S4_L005_R2.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R2_001.fastq.gz 3668610618 FASTQ S4_L005_R2 unaligned CPTAC3 47023c29-a0d9-44e4-9ee0-c508be560e14 2d01c9b451d54c8e1bab206b7cbec5f2 {"aliquot_tag": "ALQ_7e944b4f", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03473.RNA-Seq.transcriptome.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.transcriptome.gdc_realn.bam 8840394260 BAM transcriptome harmonized CPTAC3 c3abbcaf-c4a8-4883-9d3c-b5e7818152ea 41cc6d39e043f020288b63e1448567f7 {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor"} -C3N-03473.WGS.N C3N-03473 GBM WGS blood_normal CPT0207150002 CPT0207150002.WholeGenome.RP-1303.bam 89608667206 BAM aligned CPTAC3 1e0af5ee-49ae-4f50-ba39-2746bd64d86c 6a46748f7eb8b576c087890ca53a7042 {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03473.WGS.N.hg38 C3N-03473 GBM WGS blood_normal CPT0207150002 badc8643-2e9d-453d-aaaf-2b0d5e7c602d_wgs_gdc_realn.bam 135635714293 BAM harmonized CPTAC3 b7bfcf0c-933e-4354-baba-4ef357a7a93e 7aa7b18d1a622ae74df95397c552cf5a {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03473.WGS.T C3N-03473 GBM WGS tumor CPT0207090009 CPT0207090009.WholeGenome.RP-1303.bam 58921785117 BAM aligned CPTAC3 969686ba-3f58-4e2d-ae69-eaf430809a84 55fd12afd5189b9c43ebe42e3c434789 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor"} -C3N-03473.WGS.T.hg38 C3N-03473 GBM WGS tumor CPT0207090009 ddb69d52-0d77-4d38-89ff-5919f9e8df2e_wgs_gdc_realn.bam 89962842045 BAM harmonized CPTAC3 6e31eefe-0667-4ff6-9fe7-223db0466a72 b94f778763f4c2b821f705bbfe3b588b {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor"} -C3N-03473.WXS.N C3N-03473 GBM WXS blood_normal CPT0207150002 CPT0207150002.WholeExome.RP-1303.bam 24878089062 BAM aligned CPTAC3 f7bd9319-ad39-458b-a5f2-c14b05a75efa 2096c8b9a72c2dabd817bd8721fbad9f {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03473.WXS.N.hg38 C3N-03473 GBM WXS blood_normal CPT0207150002 badc8643-2e9d-453d-aaaf-2b0d5e7c602d_wxs_gdc_realn.bam 34322653573 BAM harmonized CPTAC3 64124d13-411c-4ac8-b0cf-cb0f66bdb020 67631bab0792f9196a712965f6c794e1 {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03473.WXS.T C3N-03473 GBM WXS tumor CPT0207090009 CPT0207090009.WholeExome.RP-1303.bam 20883728986 BAM aligned CPTAC3 fc7118e7-1b1c-4d52-8bf6-1d854c5b6489 477aeaba1831335bae2ebaeb230df629 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor"} -C3N-03473.WXS.T.hg38 C3N-03473 GBM WXS tumor CPT0207090009 ddb69d52-0d77-4d38-89ff-5919f9e8df2e_wxs_gdc_realn.bam 28623061235 BAM harmonized CPTAC3 907ec29c-c66c-416c-9a75-ad32f1520abe 75a4abe846242f5290b7259930778301 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor"} -C3N-03480.MethArray.Green.T C3N-03480 GBM Methylation_Array tumor CPT0285090006 204367470127_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 dcd47add-8068-4837-8af7-df2f3fc4b886 ac7a643d06d8ec150099d9192c9e015b {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor"} -C3N-03480.MethArray.Red.T C3N-03480 GBM Methylation_Array tumor CPT0285090006 204367470127_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 2bf886bd-d727-4cc4-aba6-d4389067e5b7 44517774a99c20c55c7932a4a0a98b74 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor"} -C3N-03480.miRNA-Seq.S8_L001_R1.T C3N-03480 GBM miRNA-Seq tumor CPT0285090009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACTCA_S8_L001_R1_001.unaln.bam 218234486 BAM S8_L001_R1 unaligned CPTAC3 6d08ac4e-9ef8-42f5-bd4b-e1ff48f71064 f4566f1a0a0c9299df660ae347f52059 {"aliquot_tag": "ALQ_c320998c", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03480.miRNA-Seq.T.hg38 C3N-03480 GBM miRNA-Seq tumor CPT0285090009 0ac9c4aa-8860-43ac-987e-ea5c74700679_mirnaseq_gdc_realn.bam 241747354 BAM harmonized CPTAC3 acf6192c-1d46-4746-a7fb-06f192c055ad b5a25a91ad10ad8b4dd31135171ecaa1 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor"} -C3N-03480.RNA-Seq.chimeric.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.chimeric.gdc_realn.bam 21609922 BAM chimeric harmonized CPTAC3 4ae5049f-0d45-487f-8e12-44d6d02a25a6 4bb5ff48f00de97c205002bb2ca03a70 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor"} -C3N-03480.RNA-Seq.genomic.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.genomic.gdc_realn.bam 5715243811 BAM genomic harmonized CPTAC3 30378aa4-b360-4fc5-baeb-c4b5f43ec26c 8bbbea4ca4794ed90708e8285d6c3e70 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor"} -C3N-03480.RNA-Seq.S24_L006_R1.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ S24_L006_R1 unaligned CPTAC3 f76e24bf-2452-4f99-8d37-8cbe2327cfbc 932e71315f55429ab7f6664487fe1235 {"aliquot_tag": "ALQ_c320998c", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03480.RNA-Seq.S24_L006_R2.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ S24_L006_R2 unaligned CPTAC3 4dc1a8c2-6c07-43e4-9901-b5885da43e33 8462769cb3622ada2925b32052e4721e {"aliquot_tag": "ALQ_c320998c", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03480.RNA-Seq.transcriptome.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.transcriptome.gdc_realn.bam 6301692350 BAM transcriptome harmonized CPTAC3 0b45a1f3-f1e2-4afd-950e-f0335bbc54d1 3d781d3435abe8547b292a87774db899 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor"} -C3N-03480.WGS.N C3N-03480 GBM WGS blood_normal CPT0285120002 CPT0285120002.WholeGenome.RP-2158.bam 22643381148 BAM aligned CPTAC3 106b7fd7-a720-49cb-9c8a-4bc96ff0ff72 dd734b7f0fbf58402388634782c5341b {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03480.WGS.N.hg38 C3N-03480 GBM WGS blood_normal CPT0285120002 8546651a-1f37-4289-8c55-d588c65768e2_wgs_gdc_realn.bam 69550902854 BAM harmonized CPTAC3 2e9debd8-9891-4238-bea9-3329317f7f86 3a72aae9d4bd8657aee2a1704a43d4d1 {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03480.WGS.T C3N-03480 GBM WGS tumor CPT0285090006 CPT0285090006.WholeGenome.RP-2158.bam 23801172742 BAM aligned CPTAC3 b08961ab-c5d2-4a32-8072-78e42d543d91 5d1096c6409612d8b6f437883c77d847 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor"} -C3N-03480.WGS.T.hg38 C3N-03480 GBM WGS tumor CPT0285090006 48422358-852c-4656-ae8a-0128e64c2c10_wgs_gdc_realn.bam 70954323517 BAM harmonized CPTAC3 ed1dba4a-0836-458e-add2-86f0bae54d89 15ab58f8d3cb693824a51e0f72fa9035 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor"} -C3N-03480.WXS.N C3N-03480 GBM WXS blood_normal CPT0285120002 CPT0285120002.WholeExome.RP-1303.bam 31013845954 BAM aligned CPTAC3 1e435f35-5da3-4a71-bb2b-093597145467 1f64425f59593f18fb4a524aa70ebd8a {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03480.WXS.N.hg38 C3N-03480 GBM WXS blood_normal CPT0285120002 8546651a-1f37-4289-8c55-d588c65768e2_wxs_gdc_realn.bam 42199263487 BAM harmonized CPTAC3 4fdb16b2-c34d-44b2-a6d9-cd660db8048a 07b2c0b5f1b44c2a3ba1ac2313d236f8 {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03480.WXS.T C3N-03480 GBM WXS tumor CPT0285090006 CPT0285090006.WholeExome.RP-1303.bam 28711739181 BAM aligned CPTAC3 e0db6a83-d137-4648-a861-3060e2ec26c7 fdd78aa36a9bdfaed2cc4a5df3caef24 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor"} -C3N-03480.WXS.T.hg38 C3N-03480 GBM WXS tumor CPT0285090006 48422358-852c-4656-ae8a-0128e64c2c10_wxs_gdc_realn.bam 39810831362 BAM harmonized CPTAC3 802cd086-24f7-4a2e-9d26-1b5a574065a2 0eb447fe9d8fb50eda67c65efac7909f {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor"} -C3N-03484.MethArray.Green.T C3N-03484 GBM Methylation_Array tumor CPT0285140006 204367490082_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b367671d-60d4-497f-9353-3477351580dd b3104c0ce9f6fe8311a00e4557a209f6 {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor"} -C3N-03484.MethArray.Red.T C3N-03484 GBM Methylation_Array tumor CPT0285140006 204367490082_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 b26e4c8c-e830-4c8a-a64a-fb25a223e253 94f01aa74732ae3cc37935509d154d7e {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor"} -C3N-03484.miRNA-Seq.S9_L001_R1.T C3N-03484 GBM miRNA-Seq tumor CPT0285140009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 182189713 BAM S9_L001_R1 unaligned CPTAC3 c2af4430-bc61-4c52-9467-3594592c364c 23683843adb24c2a85f7f30777c68cac {"aliquot_tag": "ALQ_f0ec8e98", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03484.miRNA-Seq.T.hg38 C3N-03484 GBM miRNA-Seq tumor CPT0285140009 386b1cd0-36e9-4c81-994f-1bf017803701_mirnaseq_gdc_realn.bam 208439388 BAM harmonized CPTAC3 bccef22b-a159-45a2-ab4f-e61e30f1938f 88383fb95ae40dc1c06614bd9480255e {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor"} -C3N-03484.RNA-Seq.chimeric.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.chimeric.gdc_realn.bam 24773061 BAM chimeric harmonized CPTAC3 4288fbe7-9490-4fd2-bbbc-be756229e19a 1fac73c45df6c4fa062eaf3dbfd55842 {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor"} -C3N-03484.RNA-Seq.genomic.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.genomic.gdc_realn.bam 6548116675 BAM genomic harmonized CPTAC3 49d8de3a-7a23-4aa1-9053-7bccc30249e8 b3fea09631fce9e12b2bb5e3ab638949 {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor"} -C3N-03484.RNA-Seq.S25_L007_R1.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ S25_L007_R1 unaligned CPTAC3 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af 642c44b9a5e2ebc892d941de95d8fdee {"aliquot_tag": "ALQ_f0ec8e98", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03484.RNA-Seq.S25_L007_R2.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ S25_L007_R2 unaligned CPTAC3 f10504f3-e9a4-4e87-9cda-7b7d225d0b17 85cab8bec0009082ed2f99c046fbbbe3 {"aliquot_tag": "ALQ_f0ec8e98", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03484.RNA-Seq.transcriptome.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.transcriptome.gdc_realn.bam 7265273801 BAM transcriptome harmonized CPTAC3 a22b57ff-b701-444c-b733-56b6ad544820 9d2bfccff5237cb702d13e29dcda7d7a {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor"} -C3N-03484.WGS.N C3N-03484 GBM WGS blood_normal CPT0285150002 CPT0285150002.WholeGenome.RP-2158.bam 29465818741 BAM aligned CPTAC3 1123e65d-b1d8-4090-9660-a5b192325c5d 9aa4f6135fe7b71553ee013bb2d0b8cb {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03484.WGS.N.hg38 C3N-03484 GBM WGS blood_normal CPT0285150002 258921c4-2923-423e-baae-2d7c9530872c_wgs_gdc_realn.bam 87200070473 BAM harmonized CPTAC3 9b795115-1bc6-4f21-96c6-53a3249ce701 ffa87c7023b32f9163508f6c96a1a623 {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03484.WGS.T C3N-03484 GBM WGS tumor CPT0285140006 CPT0285140006.WholeGenome.RP-2158.bam 20856065528 BAM aligned CPTAC3 d4e3ab41-533f-487c-b10e-ee7bc793d949 e40cd7d46a37881d1c44ff4401b025d3 {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor"} -C3N-03484.WGS.T.hg38 C3N-03484 GBM WGS tumor CPT0285140006 fc55acf5-fe90-40c2-9d6f-665007d5bf46_wgs_gdc_realn.bam 62228038734 BAM harmonized CPTAC3 aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e ddb5d90f0e65e4b4fb4b3156fcf0957c {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor"} -C3N-03484.WXS.N C3N-03484 GBM WXS blood_normal CPT0285150002 CPT0285150002.WholeExome.RP-1303.bam 23963647596 BAM aligned CPTAC3 f8cce809-a398-47be-8948-746afe7eec16 02ac6be8ecc3a454e94bfb2d96ba813e {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03484.WXS.N.hg38 C3N-03484 GBM WXS blood_normal CPT0285150002 258921c4-2923-423e-baae-2d7c9530872c_wxs_gdc_realn.bam 32203087130 BAM harmonized CPTAC3 0fa3081f-5444-4293-a0b7-ec0010a27be4 b173daff4bdd01b24073d664c5cffcf9 {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03484.WXS.T C3N-03484 GBM WXS tumor CPT0285140006 CPT0285140006.WholeExome.RP-1303.bam 24592525747 BAM aligned CPTAC3 b8cccab3-76d7-4121-bc02-0595bb4339d7 698076270233e1e424e2a4f263029c3e {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor"} -C3N-03484.WXS.T.hg38 C3N-03484 GBM WXS tumor CPT0285140006 fc55acf5-fe90-40c2-9d6f-665007d5bf46_wxs_gdc_realn.bam 34008928383 BAM harmonized CPTAC3 cc502628-c645-4eaf-94b2-d12c2924ea3b 3354c784036547bfba7ebde9b46404c9 {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor"} -C3N-03486.MethArray.Green.T C3N-03486 LSCC Methylation_Array tumor CPT0195510009 203219640095_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 254f5627-ebdb-4f3b-9a1c-36b9da4fbdb4 0faf8f360275021735578efd480b6e5b {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor"} -C3N-03486.MethArray.Red.T C3N-03486 LSCC Methylation_Array tumor CPT0195510009 203219640095_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 fd276e34-f332-47f0-a45c-acb11a00342c 09255edfb2dda580d440124179d90216 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor"} -C3N-03486.miRNA-Seq.A.hg38 C3N-03486 LSCC miRNA-Seq tissue_normal CPT0195520006 5cf9db8f-5788-4391-98fd-1f4daaf0c3e7_mirnaseq_gdc_realn.bam 223986256 BAM harmonized CPTAC3 44799c0c-438c-46e7-9b12-cf5245b459e6 b8fe231fdd3b62eec72aa939d936b400 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.miRNA-Seq.S17_L003_R1.T C3N-03486 LSCC miRNA-Seq tumor CPT0195510006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTAGAG_S17_L003_R1_001.unaln.bam 183371575 BAM S17_L003_R1 unaligned CPTAC3 6af2f011-2275-4474-8179-7b6a387394c1 74c54c7d8c887fbcca849627b5c5f90a {"aliquot_tag": "ALQ_c6056234", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03486.miRNA-Seq.S45_L004_R1.A C3N-03486 LSCC miRNA-Seq tissue_normal CPT0195520006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCCCGA_S45_L004_R1_001.unaln.bam 199638617 BAM S45_L004_R1 unaligned CPTAC3 cbd39aea-3d77-403a-ab2a-b8c3f67424a6 b7ff154341da11de5913be0e3383f077 {"aliquot_tag": "ALQ_81a518e4", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.miRNA-Seq.T.hg38 C3N-03486 LSCC miRNA-Seq tumor CPT0195510006 1145714d-53f2-46cd-b6c4-0cce6036d200_mirnaseq_gdc_realn.bam 198472726 BAM harmonized CPTAC3 d71a0057-33ec-477e-8836-e7e6b184abc3 6856f2ebebe612c0ca78a96ac973cadf {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor"} -C3N-03486.RNA-Seq.chimeric.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.chimeric.gdc_realn.bam 143317166 BAM chimeric harmonized CPTAC3 7672ee0d-61b0-4c99-964c-2ceaa32d2791 ee3726254fc18994c49b4817dc633c57 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.RNA-Seq.chimeric.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.chimeric.gdc_realn.bam 115609723 BAM chimeric harmonized CPTAC3 e61fd2c4-6349-4ce0-befc-ad1d45f02e14 16280c4c7eee4c1fb636e44871ca68a4 {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor"} -C3N-03486.RNA-Seq.genomic.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.genomic.gdc_realn.bam 6622354629 BAM genomic harmonized CPTAC3 1b750683-4c33-41a6-beb9-8f48f1642c10 0f56910fb8cd7e1c2a8ffa0292351b00 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.RNA-Seq.genomic.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.genomic.gdc_realn.bam 9685969267 BAM genomic harmonized CPTAC3 e083e983-adaf-4793-a88b-f3f58624aac1 09a16c09cd4f092559cc0b591ff939e4 {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor"} -C3N-03486.RNA-Seq.S18_L005_R1.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 2878895786 FASTQ S18_L005_R1 unaligned CPTAC3 e344fc2b-0a01-4b88-9d6e-3030b6535de0 8e4159303df7c57b77f5df49e9b714f9 {"aliquot_tag": "ALQ_81a518e4", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.RNA-Seq.S18_L005_R2.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 3076716774 FASTQ S18_L005_R2 unaligned CPTAC3 1ea088f4-3643-4395-8d81-683409b4c2bb ba0bd4a248fb37dc2c0f9f67521ef1a4 {"aliquot_tag": "ALQ_81a518e4", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.RNA-Seq.S29_L006_R1.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R1_001.fastq.gz 4475166605 FASTQ S29_L006_R1 unaligned CPTAC3 46b4e742-4b02-485c-a4c6-746de574c222 35f4dfe9a63c7e1787d1f1fd1ef1e76b {"aliquot_tag": "ALQ_c6056234", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03486.RNA-Seq.S29_L006_R2.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R2_001.fastq.gz 4685089915 FASTQ S29_L006_R2 unaligned CPTAC3 3686409a-862f-46d5-b5c3-51c05146f90e 57500faec2ed05daf63f9a815967af1f {"aliquot_tag": "ALQ_c6056234", "sample": "S29", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03486.RNA-Seq.transcriptome.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.transcriptome.gdc_realn.bam 7857932420 BAM transcriptome harmonized CPTAC3 86be8641-bfef-4f16-8d94-7eb59f45414f 4408e4c036c309803c6d71dbd960e179 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.RNA-Seq.transcriptome.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.transcriptome.gdc_realn.bam 13236343331 BAM transcriptome harmonized CPTAC3 2dca1f70-643f-42fc-8eed-ab4daff26ba8 ceedd94a9754e7780d447b300016ae5a {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor"} -C3N-03486.WGS.A C3N-03486 LSCC WGS tissue_normal CPT0195520009 CPT0195520009.WholeGenome.RP-1303.bam 56006825846 BAM aligned CPTAC3 5eaf1435-a050-4e40-9084-ae45ea8c4b8f d8af56fee672aed7260362304309133e {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.WGS.A.hg38 C3N-03486 LSCC WGS tissue_normal CPT0195520009 1813c1d8-24d0-42f9-b1ec-a216c3612018_wgs_gdc_realn.bam 83438404122 BAM harmonized CPTAC3 10d266c1-aecb-4e51-86fb-87586aa84cad 5dabdde0301fca3b1f411e8e3084edce {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.WGS.N C3N-03486 LSCC WGS blood_normal CPT0195610002 CPT0195610002.WholeGenome.RP-1303.bam 84381110240 BAM aligned CPTAC3 7d1d71e6-57cc-4aad-8bff-6bcc6c221446 61a8aa35ed288276e8632e12505b54fa {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal"} -C3N-03486.WGS.N.hg38 C3N-03486 LSCC WGS blood_normal CPT0195610002 ee42812c-00ed-48dc-9368-dbaccf74827e_wgs_gdc_realn.bam 127477121903 BAM harmonized CPTAC3 32d31bb5-6c2c-4744-bac4-14a297cce04b e897567086fba836a31e5ea1b678a88d {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal"} -C3N-03486.WGS.T C3N-03486 LSCC WGS tumor CPT0195510009 CPT0195510009.WholeGenome.RP-1303.bam 78761768834 BAM aligned CPTAC3 8470e57f-37c5-418e-a6fa-b2b35607cfbe fbf2c701ee3daa9ddeee081c2ca61284 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor"} -C3N-03486.WGS.T.hg38 C3N-03486 LSCC WGS tumor CPT0195510009 20d89cb5-a513-4faa-92f4-cf1f43cbae18_wgs_gdc_realn.bam 118204084087 BAM harmonized CPTAC3 6a31bc2a-344d-4be0-b0d3-76a24d5805d6 3c13b2c82dce78c830d56a879a5b1ae6 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor"} -C3N-03486.WXS.A C3N-03486 LSCC WXS tissue_normal CPT0195520009 CPT0195520009.WholeExome.RP-1303.bam 23071302371 BAM aligned CPTAC3 758328ea-ef5b-47f3-8568-7721db9457b7 9699bfd368b173ade306f40eacc73735 {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.WXS.A.hg38 C3N-03486 LSCC WXS tissue_normal CPT0195520009 1813c1d8-24d0-42f9-b1ec-a216c3612018_wxs_gdc_realn.bam 32006258990 BAM harmonized CPTAC3 439f3d79-cb6c-4283-8684-536c960e9653 0a3c624fc1283aad61d33a7f51e65323 {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03486.WXS.N C3N-03486 LSCC WXS blood_normal CPT0195610002 CPT0195610002.WholeExome.RP-1303.bam 31700073431 BAM aligned CPTAC3 969ca974-8050-43cf-97db-c854a002daa7 3aa70da15096260e9c284ac12cf36974 {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal"} -C3N-03486.WXS.N.hg38 C3N-03486 LSCC WXS blood_normal CPT0195610002 ee42812c-00ed-48dc-9368-dbaccf74827e_wxs_gdc_realn.bam 43867543953 BAM harmonized CPTAC3 84051ecf-2e64-43bc-8528-237b961f9c46 ed09b5cada62d7bbd32272f31ff1784b {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal"} -C3N-03486.WXS.T C3N-03486 LSCC WXS tumor CPT0195510009 CPT0195510009.WholeExome.RP-1303.bam 26809553111 BAM aligned CPTAC3 0d2e4c1f-be14-4fb5-a3e4-bcfb32938efb ffaa8d47aeb2cc4be4900edc492856fe {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor"} -C3N-03486.WXS.T.hg38 C3N-03486 LSCC WXS tumor CPT0195510009 20d89cb5-a513-4faa-92f4-cf1f43cbae18_wxs_gdc_realn.bam 37178175896 BAM harmonized CPTAC3 ff2575c5-3ec5-4b8e-8dfe-53cdece5de5f f20cce795115e2d8b654bb3d99cc62b9 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor"} -C3N-03487.MethArray.Green.A C3N-03487 HNSCC Methylation_Array tissue_normal CPT0194980009 203271750057_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e51541cf-b6ff-479d-8cda-59ea13e35ed6 c5a8e50021301e269630a2dfe4bde872 {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.MethArray.Green.T C3N-03487 HNSCC Methylation_Array tumor CPT0194960009 203273200110_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 246583fe-4181-409d-b866-deb829cf69ab 5aef434c0ecef6ea13474dcadc4330ab {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor"} -C3N-03487.MethArray.Red.A C3N-03487 HNSCC Methylation_Array tissue_normal CPT0194980009 203271750057_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 014d8637-fe9e-4bae-b8aa-1d0546debd29 29c692c1d94e0252b98516a5160e80aa {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.MethArray.Red.T C3N-03487 HNSCC Methylation_Array tumor CPT0194960009 203273200110_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 5cffdaa7-6a9d-4350-9b93-86e45c363b62 f1deb7ee8e51e24815a26512244805b7 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor"} -C3N-03487.miRNA-Seq.A.hg38 C3N-03487 HNSCC miRNA-Seq tissue_normal CPT0194980006 aee3b457-4f48-48c7-9a55-9c41586317c1_mirnaseq_gdc_realn.bam 257222102 BAM harmonized CPTAC3 bf783435-e359-41fb-be5a-8a2ed1229159 021b81ceb0b4ad3a32a4442d10d4236a {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.miRNA-Seq.S11_L003_R1.T C3N-03487 HNSCC miRNA-Seq tumor CPT0194960013 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L003_R1_001.unaln.bam 242338865 BAM S11_L003_R1 unaligned CPTAC3 8e1591c3-7be8-4f94-94b8-83bc6df8b3bd f005388693ee5cad16b853f09b72e1db {"aliquot_tag": "ALQ_cce1b025", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03487.miRNA-Seq.S22_L003_R1.A C3N-03487 HNSCC miRNA-Seq tissue_normal CPT0194980006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L003_R1_001.unaln.bam 226929409 BAM S22_L003_R1 unaligned CPTAC3 cce80feb-8e1a-4611-aa37-06d38308a586 a9dd4e2339ad31095b650963986a1888 {"aliquot_tag": "ALQ_1aa0cb8a", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.miRNA-Seq.T.hg38 C3N-03487 HNSCC miRNA-Seq tumor CPT0194960013 454adf8d-1535-4012-a4ec-d310ad01dc0d_mirnaseq_gdc_realn.bam 267280389 BAM harmonized CPTAC3 18e04e01-72ec-4009-a6f9-8d46e550fc93 8d2468109d6de74772391de5e84d2797 {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.chimeric.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.chimeric.gdc_realn.bam 251637810 BAM chimeric harmonized CPTAC3 7b37bdcb-8ae0-47e3-9cf7-15a16bde7d97 ee09c8a525457248343b8cfadd8fa8c1 {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.RNA-Seq.chimeric.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.chimeric.gdc_realn.bam 309428583 BAM chimeric harmonized CPTAC3 0fca3aff-d56d-430b-9a17-0ac5ba669e2c c9e4102b14c9a1a408d9aa49656c3243 {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.chimeric.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.chimeric.gdc_realn.bam 201906217 BAM chimeric harmonized CPTAC3 3ad3f35f-bb21-40df-949a-1c486bad9235 96c2d633589a438ed3f648a510d6ea04 {"aliquot_tag": "ALQ_2cd77ed5", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.genomic.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.genomic.gdc_realn.bam 7753094858 BAM genomic harmonized CPTAC3 51c57310-ab85-4f50-b0c2-fdab860d63a8 505d7a5989d2ffa82f04181beb90e8e1 {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.RNA-Seq.genomic.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.genomic.gdc_realn.bam 7030015830 BAM genomic harmonized CPTAC3 e5ee9734-18b1-47d6-87b5-9f90bde4c7d4 19c6377e27be54bd2c271de5f40f46d2 {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.genomic.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.genomic.gdc_realn.bam 11140036334 BAM genomic harmonized CPTAC3 4ea8ed99-b58e-4c51-a071-df9c23ed8961 b22d8943401c06e2c88a1164e3ad1fc7 {"aliquot_tag": "ALQ_2cd77ed5", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.S18_L005_R1.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3595332583 FASTQ S18_L005_R1 unaligned CPTAC3 e3db7125-d6bf-4004-84b2-6f9f495bb77d 2620041fe3b28602ffe208135ca65ed0 {"aliquot_tag": "ALQ_1aa0cb8a", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.RNA-Seq.S18_L005_R2.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4023377319 FASTQ S18_L005_R2 unaligned CPTAC3 1efae587-8f83-47c6-a8c5-b311163629a9 e7e35660bde87f2bfe0584235225c699 {"aliquot_tag": "ALQ_1aa0cb8a", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.RNA-Seq.S52_R1.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R1_001.fastq.gz 5352292883 FASTQ S52_R1 unaligned CPTAC3 df1c6a5f-5c79-40c2-a2ca-ad35245dbc24 616cc763622e788dd8f16090659f6c30 {"aliquot_tag": "ALQ_2cd77ed5", "sample": "S52", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.S52_R2.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R2_001.fastq.gz 5511221398 FASTQ S52_R2 unaligned CPTAC3 9b781148-60bc-48b8-89a0-1ab8d734cba3 611640d229be33d4989e3cb3821051bf {"aliquot_tag": "ALQ_2cd77ed5", "sample": "S52", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.S8_L008_R1.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3344472700 FASTQ S8_L008_R1 unaligned CPTAC3 5ce91bbc-6d15-4c90-b514-ed2c1f72f7b1 4e0343ce9dfa0492c699b9028e37ce6c {"aliquot_tag": "ALQ_cce1b025", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.S8_L008_R2.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 3899458231 FASTQ S8_L008_R2 unaligned CPTAC3 fc15a27e-1e62-4d26-a05b-f7a0c4cc1bc5 68a29f6eac637bec502ebe302cb0d413 {"aliquot_tag": "ALQ_cce1b025", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.transcriptome.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.transcriptome.gdc_realn.bam 9409315881 BAM transcriptome harmonized CPTAC3 82efa606-e1a0-456f-967f-aeff53044d91 7c37eed5c033389e4f01668f996c6a46 {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.RNA-Seq.transcriptome.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.transcriptome.gdc_realn.bam 9257322239 BAM transcriptome harmonized CPTAC3 cb43f0a4-53e5-423d-aabe-d5efb2c4917a 135adac4ba6ad753406def5e7631e3bc {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor"} -C3N-03487.RNA-Seq.transcriptome.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.transcriptome.gdc_realn.bam 5158626363 BAM transcriptome harmonized CPTAC3 c6c80a00-ed28-4681-818d-18c47c37948a 9a9af1231611a7d932756fe226cd3743 {"aliquot_tag": "ALQ_2cd77ed5", "gdc_sample_type": "Primary Tumor"} -C3N-03487.WGS.N C3N-03487 HNSCC WGS blood_normal CPT0195070002 CPT0195070002.WholeGenome.RP-1303.bam 62548499532 BAM aligned CPTAC3 8dda8e2b-0df3-4677-bcfb-1a78c4e2c68c 172c3d49cc027421f2d48f62b7a39013 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03487.WGS.N.hg38 C3N-03487 HNSCC WGS blood_normal CPT0195070002 5952f6d2-9a74-4404-9a00-1239265dc7d9_wgs_gdc_realn.bam 89691918518 BAM harmonized CPTAC3 b20d74b7-52a9-4641-96ce-2c4eb414de31 3b2cc686901e2efa888b17d200339208 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03487.WGS.T C3N-03487 HNSCC WGS tumor CPT0194960009 CPT0194960009.WholeGenome.RP-1303.bam 60531736043 BAM aligned CPTAC3 4eeb0f2f-a006-4a88-a925-f7bf32dc4cb1 f58df91c90cde0d517aca95dcbcb74b1 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor"} -C3N-03487.WGS.T.hg38 C3N-03487 HNSCC WGS tumor CPT0194960009 d2b8eb8f-f2c1-4d99-9a6b-fa1a752cfaad_wgs_gdc_realn.bam 87870775086 BAM harmonized CPTAC3 9c690a59-ba07-4375-909e-bac1d4c6314a f3ea9001be7b52d86576a1660ea1f84e {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor"} -C3N-03487.WXS.A C3N-03487 HNSCC WXS tissue_normal CPT0194980009 CPT0194980009.WholeExome.RP-1303.bam 24431235503 BAM aligned CPTAC3 a221c66f-2a0a-4aeb-b28a-a3a2b0ff5779 1b13ef3a9f5a37396b86b8f3d57e42fd {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.WXS.A.hg38 C3N-03487 HNSCC WXS tissue_normal CPT0194980009 7f7c8bc1-aa0e-4f6b-b6da-e759b3a04970_wxs_gdc_realn.bam 33459241916 BAM harmonized CPTAC3 8764e4cf-abfe-43fb-a6b5-862d8fa3215a 6aab9aa47d7e9dbfe188582bf08eec2b {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03487.WXS.N C3N-03487 HNSCC WXS blood_normal CPT0195070002 CPT0195070002.WholeExome.RP-1303.bam 27104624347 BAM aligned CPTAC3 e94be834-58c3-4057-bcf5-9a1dc99c351f d2ba5ad1c5039445029ef7bc19754fa0 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03487.WXS.N.hg38 C3N-03487 HNSCC WXS blood_normal CPT0195070002 5952f6d2-9a74-4404-9a00-1239265dc7d9_wxs_gdc_realn.bam 36792240940 BAM harmonized CPTAC3 0fe6e0b6-6343-4de4-bcdf-3ce76f996224 0829f91fb21b08759daf963498cd10c2 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03487.WXS.T C3N-03487 HNSCC WXS tumor CPT0194960009 CPT0194960009.WholeExome.RP-1303.bam 18290034336 BAM aligned CPTAC3 f12ed001-6580-4168-908b-af35a5f5d47b 068d7b82e4e486d055c20c106d437328 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor"} -C3N-03487.WXS.T.hg38 C3N-03487 HNSCC WXS tumor CPT0194960009 d2b8eb8f-f2c1-4d99-9a6b-fa1a752cfaad_wxs_gdc_realn.bam 26071574310 BAM harmonized CPTAC3 c7adc0b3-56c8-454d-86d4-f0ee38c7a197 61bd1752d4dd3224c4a0147ba37cef81 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor"} -C3N-03488.MethArray.Green.A C3N-03488 HNSCC Methylation_Array tissue_normal CPT0194260009 203219640047_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4841e165-86de-419d-9a55-78c5271a5419 86f5f4db5d4152f6bb44c38caa26710e {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.MethArray.Green.T C3N-03488 HNSCC Methylation_Array tumor CPT0194250009 203273200073_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 48f37927-170a-46a4-a8de-35024b019938 274fce730c5fc7a40d6be39e960ca577 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor"} -C3N-03488.MethArray.Red.A C3N-03488 HNSCC Methylation_Array tissue_normal CPT0194260009 203219640047_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 264102a7-12cf-46dd-a3d5-44290f27587a 3db284863dacdd3a45243bfd28ad4a7f {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.MethArray.Red.T C3N-03488 HNSCC Methylation_Array tumor CPT0194250009 203273200073_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 1e9bb7b6-420e-4c75-a632-e096b32e70e1 973a3baa618700375b3698d4fcaef889 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor"} -C3N-03488.miRNA-Seq.A.hg38 C3N-03488 HNSCC miRNA-Seq tissue_normal CPT0194260006 c63bff36-fa05-43c5-9765-e566f0002a8e_mirnaseq_gdc_realn.bam 279332386 BAM harmonized CPTAC3 4f0c6014-c65d-4315-97bb-adbcc991721e 2725600494adf76cc2b6e76bf0cfd91b {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.miRNA-Seq.S19_L003_R1.A C3N-03488 HNSCC miRNA-Seq tissue_normal CPT0194260006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L003_R1_001.unaln.bam 251391980 BAM S19_L003_R1 unaligned CPTAC3 18a1b466-8f29-47d9-a864-c79c70125cae 21c49d53fc900344f169923bba9492a6 {"aliquot_tag": "ALQ_cf578528", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.miRNA-Seq.S8_L003_R1.T C3N-03488 HNSCC miRNA-Seq tumor CPT0194250013 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L003_R1_001.unaln.bam 219529435 BAM S8_L003_R1 unaligned CPTAC3 2e000fe2-7651-4e92-8f4e-26133a2686cb 0a754f7cbf56347d250e46c639280c52 {"aliquot_tag": "ALQ_e1863a36", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03488.miRNA-Seq.T.hg38 C3N-03488 HNSCC miRNA-Seq tumor CPT0194250013 0811d9fa-0627-439e-ab9b-be88ff4c14f9_mirnaseq_gdc_realn.bam 243432661 BAM harmonized CPTAC3 08ccac6a-54d4-4eac-9675-f4151adc7df5 78a3d25bc8ca93f54c8be232e9c06c78 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.chimeric.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.chimeric.gdc_realn.bam 361267019 BAM chimeric harmonized CPTAC3 3935941d-7e40-47e8-a6b8-b548b798df1d 40e0ec3c836a3c28dcc54ebaafa5cdca {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.RNA-Seq.chimeric.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.chimeric.gdc_realn.bam 340925531 BAM chimeric harmonized CPTAC3 96b78a6c-7481-48f8-9ffe-6ce06183e027 6e15da43ad0a78a61d94d18a11456bb1 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.chimeric.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.chimeric.gdc_realn.bam 155811769 BAM chimeric harmonized CPTAC3 d2857233-ffc1-42cd-925c-a5d29992d928 f5eec91127a1d96919836b7471ba1c76 {"aliquot_tag": "ALQ_ca78b61b", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.genomic.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.genomic.gdc_realn.bam 9258219343 BAM genomic harmonized CPTAC3 a4245775-f491-458d-bab1-da73588ade4e 8045e3fbc0c89afd7c182190fd5bbd08 {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.RNA-Seq.genomic.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.genomic.gdc_realn.bam 8800054513 BAM genomic harmonized CPTAC3 4a79ee64-38c7-411b-8935-87126a90203e b12789ad7519a0f97c6a7d6b4e1bb5a9 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.genomic.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.genomic.gdc_realn.bam 14821132192 BAM genomic harmonized CPTAC3 791cd084-d0ad-4683-b864-396810e964f3 418ae84dc5f6acb6976a68f841f2eb2c {"aliquot_tag": "ALQ_ca78b61b", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.S21_L006_R1.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4278259141 FASTQ S21_L006_R1 unaligned CPTAC3 d25245be-5718-4f6b-92a7-ddb81b277592 833ee8d3d2cf3b3ce47e0756b1ec83bb {"aliquot_tag": "ALQ_cf578528", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.RNA-Seq.S21_L006_R2.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4682112501 FASTQ S21_L006_R2 unaligned CPTAC3 8a68abd7-3487-49a1-93bc-601e5cf3626b 481c7c2e5950cce661b829d1d75335f6 {"aliquot_tag": "ALQ_cf578528", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.RNA-Seq.S2_L001_R1.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R1_001.fastq.gz 4195953922 FASTQ S2_L001_R1 unaligned CPTAC3 2b388b80-b84f-4a89-943e-e13e05469504 84ef94645bb0a189e0dbece517b014dc {"aliquot_tag": "ALQ_e1863a36", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.S2_L001_R2.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R2_001.fastq.gz 4758724724 FASTQ S2_L001_R2 unaligned CPTAC3 5dcdb168-82db-4792-90d9-0d0f84b03cc4 775a45cba584780fa0866cf37819d589 {"aliquot_tag": "ALQ_e1863a36", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.S53_R1.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R1_001.fastq.gz 8993429563 FASTQ S53_R1 unaligned CPTAC3 3719256b-3359-441d-a387-765a7aa6d214 9094ac33d1057a776a939403937eddff {"aliquot_tag": "ALQ_ca78b61b", "sample": "S53", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.S53_R2.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R2_001.fastq.gz 9236181115 FASTQ S53_R2 unaligned CPTAC3 d5c7b590-8f6d-4e0e-b43e-1f2cca3bf7c7 dbfaf509d0c64f6c44bb7de87c031363 {"aliquot_tag": "ALQ_ca78b61b", "sample": "S53", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.transcriptome.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.transcriptome.gdc_realn.bam 12479106416 BAM transcriptome harmonized CPTAC3 62c554ba-0dcf-496c-ae97-8f2002d78070 bc7aec0a2abcd8ac21d281d0b73b6d14 {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.RNA-Seq.transcriptome.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.transcriptome.gdc_realn.bam 12159401913 BAM transcriptome harmonized CPTAC3 583ed60f-f0bf-42e1-a78f-4beb84efb00e 468d7a8e1ab43e3d2ef9402ab487c6b8 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor"} -C3N-03488.RNA-Seq.transcriptome.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.transcriptome.gdc_realn.bam 10727269329 BAM transcriptome harmonized CPTAC3 77a6947d-9642-471e-a102-4de23fd37900 546ca390701619ed075dcb9a6106a717 {"aliquot_tag": "ALQ_ca78b61b", "gdc_sample_type": "Primary Tumor"} -C3N-03488.WGS.N C3N-03488 HNSCC WGS blood_normal CPT0194350002 CPT0194350002.WholeGenome.RP-1303.bam 64193374117 BAM aligned CPTAC3 101e9347-a2ee-42f4-aae5-9159a8733977 c3debf6adcc688ff778f9f2647f36a54 {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal"} -C3N-03488.WGS.N.hg38 C3N-03488 HNSCC WGS blood_normal CPT0194350002 5e7082da-c685-4905-98d7-a95507755ab3_wgs_gdc_realn.bam 92342619730 BAM harmonized CPTAC3 1bfb4160-6b19-406d-948d-8205be21b509 9ce0203936c00185f75b6f3d2b78ac27 {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal"} -C3N-03488.WGS.T C3N-03488 HNSCC WGS tumor CPT0194250009 CPT0194250009.WholeGenome.RP-1303.bam 74949739248 BAM aligned CPTAC3 4c5d0deb-01fd-4063-b406-84389245fb9f 5ea9832eb83d3ae12e1314d46716d9b2 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor"} -C3N-03488.WGS.T.hg38 C3N-03488 HNSCC WGS tumor CPT0194250009 a1eedb0b-d0a3-4f36-9b6e-5c4f21a04400_wgs_gdc_realn.bam 110987360820 BAM harmonized CPTAC3 2159c66a-efdd-445b-bb03-1779f7b050fa 4759050665dba1812dc3df972fc3a6d4 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor"} -C3N-03488.WXS.A C3N-03488 HNSCC WXS tissue_normal CPT0194260009 CPT0194260009.WholeExome.RP-1303.bam 42627729075 BAM aligned CPTAC3 eab4be00-f4a5-4419-9128-1b50f17689c8 ccce9bb215feb4df2d4575ab45bf98ca {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.WXS.A.hg38 C3N-03488 HNSCC WXS tissue_normal CPT0194260009 6d39d0e2-c49f-43cc-aac2-eada488ca537_wxs_gdc_realn.bam 58110351862 BAM harmonized CPTAC3 b30401b0-cf05-4656-9de7-639ad8e337e4 a9cae71b685ea979d742416a3ae2f8d3 {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03488.WXS.N C3N-03488 HNSCC WXS blood_normal CPT0194350002 CPT0194350002.WholeExome.RP-1303.bam 20467412139 BAM aligned CPTAC3 3cd53f22-0ec0-495c-b888-74e9603a97b0 ec335b89653ba9d8604fd854f59bd536 {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal"} -C3N-03488.WXS.N.hg38 C3N-03488 HNSCC WXS blood_normal CPT0194350002 5e7082da-c685-4905-98d7-a95507755ab3_wxs_gdc_realn.bam 28036264339 BAM harmonized CPTAC3 0f7e7d50-4353-4e6d-8b8d-0bec19b9c708 dd6e211d303063aada5dfca8d95edbba {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal"} -C3N-03488.WXS.T C3N-03488 HNSCC WXS tumor CPT0194250009 CPT0194250009.WholeExome.RP-1303.bam 22546531723 BAM aligned CPTAC3 6b6c007c-2560-495a-8e31-d1b7afba8cf2 7912e9a8bd4179c6f58bcb5c584fa697 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor"} -C3N-03488.WXS.T.hg38 C3N-03488 HNSCC WXS tumor CPT0194250009 a1eedb0b-d0a3-4f36-9b6e-5c4f21a04400_wxs_gdc_realn.bam 30282813221 BAM harmonized CPTAC3 d8475a0b-478f-4a57-8778-4b5e57800f2c faff8aba40727f7066337ed4e89914ba {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor"} -C3N-03490.MethArray.Green.A C3N-03490 HNSCC Methylation_Array tissue_normal CPT0195700009 203219650096_R03C01_Grn.idat 13676210 IDAT Green NA CPTAC3 895deda6-e44d-4fa4-982a-9887912e50f5 25f28d3168db965c21569b67c8f669ec {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.MethArray.Green.T C3N-03490 HNSCC Methylation_Array tumor CPT0195680009 203271740156_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 65a07298-8be1-4410-ae9c-ba399ad46926 ccdc1b4b7ea2acc791c6b4a32b1a9f8f {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor"} -C3N-03490.MethArray.Red.A C3N-03490 HNSCC Methylation_Array tissue_normal CPT0195700009 203219650096_R03C01_Red.idat 13676210 IDAT Red NA CPTAC3 d17f704f-d262-48de-8609-25b7dc1e848b 7a5b32e14160df11afb761ca792510d3 {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.MethArray.Red.T C3N-03490 HNSCC Methylation_Array tumor CPT0195680009 203271740156_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 30549f2d-8bf8-4e9b-8b10-ef9dd478548c d8719056209ad5e481166a82ee539317 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor"} -C3N-03490.miRNA-Seq.A.hg38 C3N-03490 HNSCC miRNA-Seq tissue_normal CPT0195700006 cb09ff6d-7dc5-4680-adc8-983207855a21_mirnaseq_gdc_realn.bam 284910854 BAM harmonized CPTAC3 227b1c58-8dc5-46b7-aa3e-f72752b053ac c608cbd111d435e35ef9be6a46a05cde {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.miRNA-Seq.S23_L003_R1.A C3N-03490 HNSCC miRNA-Seq tissue_normal CPT0195700006 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L003_R1_001.unaln.bam 243772141 BAM S23_L003_R1 unaligned CPTAC3 4220fce6-960e-4dda-a8b5-45726a1e915b 7f511f11a4e53aff64506da34f53a0d6 {"aliquot_tag": "ALQ_b6adea8f", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.miRNA-Seq.S48_L002_R1.T C3N-03490 HNSCC miRNA-Seq tumor CPT0195680006 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGGCA_S48_L002_R1_001.unaln.bam 180812760 BAM S48_L002_R1 unaligned CPTAC3 4a62b9f5-961d-4064-a8b1-8bfb3a3133fe 41b21cb003a7d7fbaa6183649d8cd124 {"aliquot_tag": "ALQ_4d8172eb", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03490.miRNA-Seq.T.hg38 C3N-03490 HNSCC miRNA-Seq tumor CPT0195680006 9af36d0b-6d21-474b-a70e-88892d0fbc1a_mirnaseq_gdc_realn.bam 203223081 BAM harmonized CPTAC3 28b487c2-61b6-4b98-a033-e5bf6b1326be 2ee12a10ae9d23a4c09db2823753ad4f {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.chimeric.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.chimeric.gdc_realn.bam 222340632 BAM chimeric harmonized CPTAC3 5ccbefad-c6a8-4dd4-a91b-90d8eefa3e09 d8b25c775aa0c97f86b93693bdf2c9be {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.RNA-Seq.chimeric.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.chimeric.gdc_realn.bam 169400394 BAM chimeric harmonized CPTAC3 01c101be-6a5d-4327-8e0a-0a419b436707 8c37bb3d0272f3b5a86cd04610799e4c {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.chimeric.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.chimeric.gdc_realn.bam 194493673 BAM chimeric harmonized CPTAC3 e34501f7-3e48-4a45-93dc-73490a94b8dd 6e83a6754ab8524043b94d5a16230d37 {"aliquot_tag": "ALQ_4b121d0d", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.genomic.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.genomic.gdc_realn.bam 9487497382 BAM genomic harmonized CPTAC3 cb19d7b0-bc3a-48a1-ab09-c90bdfae9c17 4f74a620d4b91dbb55811c734670bd03 {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.RNA-Seq.genomic.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.genomic.gdc_realn.bam 5995620242 BAM genomic harmonized CPTAC3 3f0d7288-a13f-4cad-861e-b3c49936b300 7aaa7f9b3d0bdce33fe877889c80cfd9 {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.genomic.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.genomic.gdc_realn.bam 11294754405 BAM genomic harmonized CPTAC3 ca5b8f24-34f7-430e-ab5f-56eff54c27b3 1024921c6ce8ee036d6bef313ba4f9da {"aliquot_tag": "ALQ_4b121d0d", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.S12_L008_R1.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R1_001.fastq.gz 2692564309 FASTQ S12_L008_R1 unaligned CPTAC3 65900e87-8781-4a1d-a933-6ec5e5b92410 636d1f1f9c000382e5064b013702b951 {"aliquot_tag": "ALQ_4d8172eb", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.S12_L008_R2.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R2_001.fastq.gz 2915925896 FASTQ S12_L008_R2 unaligned CPTAC3 5996f568-5955-4a29-b3e9-81f0cc3d868b e05939cd7cbc45ddc795262036ef8a23 {"aliquot_tag": "ALQ_4d8172eb", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.S17_L005_R1.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4569437576 FASTQ S17_L005_R1 unaligned CPTAC3 86d45950-0eb6-41c1-a687-f2b4a3d3153a 36749fcd985362d5f53ab2ab6099a9a2 {"aliquot_tag": "ALQ_b6adea8f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.RNA-Seq.S17_L005_R2.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5058158415 FASTQ S17_L005_R2 unaligned CPTAC3 93b85877-4e25-446e-822b-e7b58e2827e6 32d5500f6149e83a78a7e1a26c117a01 {"aliquot_tag": "ALQ_b6adea8f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.RNA-Seq.S73_R1.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R1_001.fastq.gz 6583537995 FASTQ S73_R1 unaligned CPTAC3 fb86a691-9b2e-4072-8484-5e3a8d4be15d 43fa606c612b1216822b75e2ebfba58c {"aliquot_tag": "ALQ_4b121d0d", "sample": "S73", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.S73_R2.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R2_001.fastq.gz 6753931081 FASTQ S73_R2 unaligned CPTAC3 2ccffb64-0bc0-4480-8498-dc158f79e1e1 6e4eb51447f5119393460f8d0dd24ac0 {"aliquot_tag": "ALQ_4b121d0d", "sample": "S73", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.transcriptome.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.transcriptome.gdc_realn.bam 14378965528 BAM transcriptome harmonized CPTAC3 78d1786e-ca80-42ac-b28a-0b6bce73fb81 f5cb1d36add019e23082be0f7b3e18e7 {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.RNA-Seq.transcriptome.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.transcriptome.gdc_realn.bam 7024047485 BAM transcriptome harmonized CPTAC3 1ecc91d3-d033-4d3e-827f-5f1178f00648 b133eba541d7d600f1d11f393ba0022a {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor"} -C3N-03490.RNA-Seq.transcriptome.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.transcriptome.gdc_realn.bam 6392194679 BAM transcriptome harmonized CPTAC3 858dc62f-7936-45ac-bbd9-a9f6b67534e7 fca267bc019a1e7f081d5a037bf58821 {"aliquot_tag": "ALQ_4b121d0d", "gdc_sample_type": "Primary Tumor"} -C3N-03490.WGS.N C3N-03490 HNSCC WGS blood_normal CPT0195790002 CPT0195790002.WholeGenome.RP-1303.bam 71140815108 BAM aligned CPTAC3 2eb1fabf-527f-431b-9b69-e6e617cbe020 ce85cc29d7b1519649d92d31082cebf2 {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03490.WGS.N.hg38 C3N-03490 HNSCC WGS blood_normal CPT0195790002 f000ac5e-b381-4539-bf2b-64b0d92319a2_wgs_gdc_realn.bam 103586674651 BAM harmonized CPTAC3 73946e3d-9ee0-49d1-ac9c-12f70831258f e7d3ece2b8314af141a575217ffcb685 {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03490.WGS.T C3N-03490 HNSCC WGS tumor CPT0195680009 CPT0195680009.WholeGenome.RP-1303.bam 64039305631 BAM aligned CPTAC3 a115e510-476b-48d4-825d-670db9cfc4a7 9f3b83c50a2e11d8dd1466211303d13a {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor"} -C3N-03490.WGS.T.hg38 C3N-03490 HNSCC WGS tumor CPT0195680009 36a25f31-a1a5-4493-ab9d-27a685e74fec_wgs_gdc_realn.bam 94840713163 BAM harmonized CPTAC3 eafc503d-f262-4b40-ad92-e145bf866119 c08c74eeea82ae42904129ca7824b002 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor"} -C3N-03490.WXS.A C3N-03490 HNSCC WXS tissue_normal CPT0195700009 CPT0195700009.WholeExome.RP-1303.bam 24384260823 BAM aligned CPTAC3 6666af42-bae1-4507-8d34-be88996fcf98 d9d13c5b434f5aaea530d773e92b32ce {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.WXS.A.hg38 C3N-03490 HNSCC WXS tissue_normal CPT0195700009 b814e55e-3812-46dd-9714-ad8bc42d5494_wxs_gdc_realn.bam 33519607999 BAM harmonized CPTAC3 6655aa10-d9c9-407a-84ac-a888b89b8bc3 67a10cdd6a13dd48577383e5c3800702 {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03490.WXS.N C3N-03490 HNSCC WXS blood_normal CPT0195790002 CPT0195790002.WholeExome.RP-1303.bam 43641851702 BAM aligned CPTAC3 682c6567-7737-483e-a1fa-640decaedfa6 c8b289ef3d9b0f44d7da68a1e00cbff3 {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03490.WXS.N.hg38 C3N-03490 HNSCC WXS blood_normal CPT0195790002 f000ac5e-b381-4539-bf2b-64b0d92319a2_wxs_gdc_realn.bam 60488139327 BAM harmonized CPTAC3 10252ace-4671-49bd-9f9d-facf5d6fe43b bd41169a6d74a5fac8b07ef4527a4d6b {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03490.WXS.T C3N-03490 HNSCC WXS tumor CPT0195680009 CPT0195680009.WholeExome.RP-1303.bam 25080739978 BAM aligned CPTAC3 318c9962-9233-4f28-91e2-03cff20698f0 d4cb391110433f1c75327fdc5037ab28 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor"} -C3N-03490.WXS.T.hg38 C3N-03490 HNSCC WXS tumor CPT0195680009 36a25f31-a1a5-4493-ab9d-27a685e74fec_wxs_gdc_realn.bam 35035725934 BAM harmonized CPTAC3 0697de70-2914-4b09-a090-1f2dc3c17d15 806b04ebca25487595bfd90fa00605f6 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor"} -C3N-03612.MethArray.Green.A C3N-03612 HNSCC Methylation_Array tissue_normal CPT0194800009 203219650047_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 aa32a27a-970f-4023-ab82-ff9a0bf06ef7 de5995fc3970eb4687dd47c2691d42ee {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.MethArray.Green.T C3N-03612 HNSCC Methylation_Array tumor CPT0194790009 203220070165_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 113d8d3e-a84c-449c-9803-356d8c8524ac 5be4faeda0e7449a304f415d0774be80 {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor"} -C3N-03612.MethArray.Red.A C3N-03612 HNSCC Methylation_Array tissue_normal CPT0194800009 203219650047_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 255e6bf0-38d4-4fbd-b959-6380e01e93f4 50f32690783b1f19720f36dbe8690420 {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.MethArray.Red.T C3N-03612 HNSCC Methylation_Array tumor CPT0194790009 203220070165_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 734b808e-02d9-441b-a6d9-69acdd8604a9 d80c8b6751e48e350ba994c82b85b5fc {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor"} -C3N-03612.miRNA-Seq.A.hg38 C3N-03612 HNSCC miRNA-Seq tissue_normal CPT0194800006 e6144a97-5e23-4164-9e44-a1b546b1a0dc_mirnaseq_gdc_realn.bam 193484332 BAM harmonized CPTAC3 8f4dca7a-d371-4136-8393-8c37c71353ad 745a7466628e4b565c40655415dc6082 {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.miRNA-Seq.S10_L003_R1.T C3N-03612 HNSCC miRNA-Seq tumor CPT0194790013 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L003_R1_001.unaln.bam 232210668 BAM S10_L003_R1 unaligned CPTAC3 1602f358-0a46-4f1b-b4a8-8957f9f9c18d a2c72d9962469ef9abb6364921251ce2 {"aliquot_tag": "ALQ_74bb4684", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03612.miRNA-Seq.S21_L003_R1.A C3N-03612 HNSCC miRNA-Seq tissue_normal CPT0194800006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L003_R1_001.unaln.bam 174836727 BAM S21_L003_R1 unaligned CPTAC3 965bb493-22d8-4d51-b1de-41e4973c98ad 38914b753c69e462a3012ec0f1fc3b7d {"aliquot_tag": "ALQ_e18c53ee", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.miRNA-Seq.T.hg38 C3N-03612 HNSCC miRNA-Seq tumor CPT0194790013 06e62279-fa76-438b-8552-0235b572e75c_mirnaseq_gdc_realn.bam 255539055 BAM harmonized CPTAC3 0e040661-411f-40cd-a91c-b7484ef5f68c 18e89cb17d69f44158693b820a87d67a {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.chimeric.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.chimeric.gdc_realn.bam 274794213 BAM chimeric harmonized CPTAC3 41dbccc6-df42-4365-9b04-0a01fff18207 a740afc972d3a72c9106aec2ce257fda {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.RNA-Seq.chimeric.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.chimeric.gdc_realn.bam 212910732 BAM chimeric harmonized CPTAC3 ac660a3b-0c99-484e-bcff-444b58ec9d3d 993a2c55c285faf72796028d5bd63048 {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.chimeric.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.chimeric.gdc_realn.bam 211774418 BAM chimeric harmonized CPTAC3 201e334d-31e6-4e3e-b1f0-3018b89e1e1c eb230677c51de030ad8d975236f9ac29 {"aliquot_tag": "ALQ_21538ddc", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.genomic.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.genomic.gdc_realn.bam 7413563082 BAM genomic harmonized CPTAC3 0c9f41e7-9185-4932-b27d-5870a2b0c641 561f2f6590c7b8cbd4d191033e3bc902 {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.RNA-Seq.genomic.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.genomic.gdc_realn.bam 8678217569 BAM genomic harmonized CPTAC3 f6c436a9-ae2e-4e0c-ae86-8fa836a767f5 a67bd361fc1e33439765a819308b8e85 {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.genomic.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.genomic.gdc_realn.bam 11619410759 BAM genomic harmonized CPTAC3 fad9d08c-3cd8-4f2c-b513-a913e66210ca 4d4734aeaeea5d0600f6cd46233cca73 {"aliquot_tag": "ALQ_21538ddc", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.S24_L006_R1.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R1_001.fastq.gz 3453599567 FASTQ S24_L006_R1 unaligned CPTAC3 e31308a3-1e28-4348-942a-c93ef9a984e8 fdc61e8e1fe3c2baafcc46fd4b3170ef {"aliquot_tag": "ALQ_e18c53ee", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.RNA-Seq.S24_L006_R2.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R2_001.fastq.gz 3807189701 FASTQ S24_L006_R2 unaligned CPTAC3 7be1ccd8-b95f-413f-9664-ac3cac74dbbe 8b88c511b629e4cf2364861c6ed2c68f {"aliquot_tag": "ALQ_e18c53ee", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.RNA-Seq.S29_R1.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R1_001.fastq.gz 8100142083 FASTQ S29_R1 unaligned CPTAC3 ab3319b7-e017-4811-9977-4a9c7afdf333 14d844d049385ef4b6e20af97fa7b251 {"aliquot_tag": "ALQ_21538ddc", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.S29_R2.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R2_001.fastq.gz 8344890773 FASTQ S29_R2 unaligned CPTAC3 bea7126c-85c5-46f6-92d4-6aedca968aa7 9e6a732911e33b4a599a7a973a61f40b {"aliquot_tag": "ALQ_21538ddc", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.S6_L008_R1.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4040392179 FASTQ S6_L008_R1 unaligned CPTAC3 e896cd56-c671-43d9-b4c1-89832620b660 fed3b2a8b57da78abe2c163bfc1e343a {"aliquot_tag": "ALQ_74bb4684", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.S6_L008_R2.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4548405210 FASTQ S6_L008_R2 unaligned CPTAC3 c46b1fc3-e786-42b0-8895-a002273e5280 19d2ca3d6668b865445037b80a0c0d99 {"aliquot_tag": "ALQ_74bb4684", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.transcriptome.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.transcriptome.gdc_realn.bam 10293730718 BAM transcriptome harmonized CPTAC3 65520f79-19ce-4445-9504-f5ac60540e5e 6615bdd04a169bf05b976afe9cf57009 {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.RNA-Seq.transcriptome.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.transcriptome.gdc_realn.bam 10116996303 BAM transcriptome harmonized CPTAC3 65ba8356-3553-4ecc-8452-9ec986f1fdfd e6413afb53b4363a2dd2286dbd8314fd {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor"} -C3N-03612.RNA-Seq.transcriptome.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.transcriptome.gdc_realn.bam 8696601420 BAM transcriptome harmonized CPTAC3 60a4b304-540e-48b0-8de5-322c5f7e49b3 dee4ae455024263750aa91a7983cfbfd {"aliquot_tag": "ALQ_21538ddc", "gdc_sample_type": "Primary Tumor"} -C3N-03612.WGS.N C3N-03612 HNSCC WGS blood_normal CPT0194890002 CPT0194890002.WholeGenome.RP-1303.bam 63702308352 BAM aligned CPTAC3 b7ef698b-15b1-4cc3-a251-71c64991526e b283436315f4ddb1d87cc0fedafd60ad {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal"} -C3N-03612.WGS.N.hg38 C3N-03612 HNSCC WGS blood_normal CPT0194890002 e8c264c5-c50c-44a4-86e4-97500b965dfd_wgs_gdc_realn.bam 92886518200 BAM harmonized CPTAC3 3adad855-acfe-47c7-86ca-2dca60c49929 f96d57a52cd51090e5da87411f62d6ba {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal"} -C3N-03612.WGS.T C3N-03612 HNSCC WGS tumor CPT0194790009 CPT0194790009.WholeGenome.RP-1303.bam 70177125578 BAM aligned CPTAC3 ad6eb4a1-e4ef-4263-86dd-a974f7e2af29 efc1c539d72ae86ccbeb2c39bb2702eb {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor"} -C3N-03612.WGS.T.hg38 C3N-03612 HNSCC WGS tumor CPT0194790009 a52558dd-88b4-4bda-8c25-d3b87bde4163_wgs_gdc_realn.bam 101525876270 BAM harmonized CPTAC3 f1d3ce82-c89a-4c51-b61f-196d3d59a939 2e243c637eb58969f53833ce88ced176 {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor"} -C3N-03612.WXS.A C3N-03612 HNSCC WXS tissue_normal CPT0194800009 CPT0194800009.WholeExome.RP-1303.bam 22246417923 BAM aligned CPTAC3 ddfc1346-cae6-4f4f-b5d2-3d2bf2f3912f 6d511457e96157d92501136a26fe3290 {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.WXS.A.hg38 C3N-03612 HNSCC WXS tissue_normal CPT0194800009 c5e79785-1e03-465e-a1ef-6d6db0164d8b_wxs_gdc_realn.bam 30851350204 BAM harmonized CPTAC3 ee2970cf-41c1-4c1e-9e0b-a016f4420688 7b79637cf2c8419374df3d1acdafd005 {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03612.WXS.N C3N-03612 HNSCC WXS blood_normal CPT0194890002 CPT0194890002.WholeExome.RP-1303.bam 46012789426 BAM aligned CPTAC3 4c9364dd-3a81-4ec3-b1e8-5567bd2318d5 3e5d9d457205bb8c53432a455e6c5dfc {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal"} -C3N-03612.WXS.N.hg38 C3N-03612 HNSCC WXS blood_normal CPT0194890002 e8c264c5-c50c-44a4-86e4-97500b965dfd_wxs_gdc_realn.bam 64533653781 BAM harmonized CPTAC3 9fee90a3-69c8-4cb5-a684-36a0d45f8f68 b7d298a0d4b8ffdb6f963e11c18bde25 {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal"} -C3N-03612.WXS.T C3N-03612 HNSCC WXS tumor CPT0194790009 CPT0194790009.WholeExome.RP-1303.bam 27425976946 BAM aligned CPTAC3 a91c1718-e597-4f89-a449-ec22bfd0ca6c f8a25debbf95b6a1e352e93e4477465a {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor"} -C3N-03612.WXS.T.hg38 C3N-03612 HNSCC WXS tumor CPT0194790009 a52558dd-88b4-4bda-8c25-d3b87bde4163_wxs_gdc_realn.bam 37564844679 BAM harmonized CPTAC3 7af29814-e9b2-4176-a781-1bbbf56c249a 9c3dfe2140a530a7af458bce9a469cdb {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor"} -C3N-03619.MethArray.Green.A C3N-03619 HNSCC Methylation_Array tissue_normal CPT0195880008 203271750010_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 10f23dd1-36da-4afe-9b60-fd109e160a25 9b6ae0602c5bb55b0f80ae0dd4dc3255 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.MethArray.Green.T C3N-03619 HNSCC Methylation_Array tumor CPT0195860009 203271750010_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 faf62f22-f60d-45a1-a273-ecf225d11803 289045b69609f4d3c441d92bff997674 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor"} -C3N-03619.MethArray.Red.A C3N-03619 HNSCC Methylation_Array tissue_normal CPT0195880008 203271750010_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 e806a090-fd48-4f3f-be80-df9e8705332b 4941b4ab4edc832ffc75a9b723521667 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.MethArray.Red.T C3N-03619 HNSCC Methylation_Array tumor CPT0195860009 203271750010_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 96cb3e74-2bca-44d8-a700-1b944357ba04 d9fd75be866ded10038671934136e168 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor"} -C3N-03619.miRNA-Seq.A.hg38 C3N-03619 HNSCC miRNA-Seq tissue_normal CPT0195880006 de5be65e-be92-48db-8a6a-1f8da9c66d20_mirnaseq_gdc_realn.bam 339915180 BAM harmonized CPTAC3 a04b2477-0d71-4610-b6e7-6c5a84e52278 849399e195a27087c0663a9870b91030 {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.miRNA-Seq.S1_L003_R1.T C3N-03619 HNSCC miRNA-Seq tumor CPT0195860006 190228_UNC32-K00270_0151_AHYLY3BBXX_ATCACG_S1_L003_R1_001.unaln.bam 173301832 BAM S1_L003_R1 unaligned CPTAC3 c97008d4-e736-458b-b0d5-957cfcf69614 01dafe979fe9908fc17731e51f27529a {"aliquot_tag": "ALQ_c8bbadfa", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03619.miRNA-Seq.S24_L003_R1.A C3N-03619 HNSCC miRNA-Seq tissue_normal CPT0195880006 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L003_R1_001.unaln.bam 300055303 BAM S24_L003_R1 unaligned CPTAC3 68c6dee9-d4b9-4974-9fca-50353e3c0c8e 8fd70285bce122c3bfa92b5f12966bc0 {"aliquot_tag": "ALQ_778b139b", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.miRNA-Seq.T.hg38 C3N-03619 HNSCC miRNA-Seq tumor CPT0195860006 50e05b42-2f62-4884-8467-5a9cb3331154_mirnaseq_gdc_realn.bam 193120099 BAM harmonized CPTAC3 75c8d8e7-037a-4ad0-b087-5aa828124ff1 50d327da3813401e598f5885cb6c19a5 {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.chimeric.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.chimeric.gdc_realn.bam 143919506 BAM chimeric harmonized CPTAC3 ae0cf5c3-f8e3-425d-957c-1cd67f01a030 03a71b47b7b4254c9fea58e7619d21b5 {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.RNA-Seq.chimeric.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.chimeric.gdc_realn.bam 346557287 BAM chimeric harmonized CPTAC3 199c8d30-8f7a-4f60-a7e0-60fb4a1803d4 2e17aef9f0fe7dd2bed91536e85fe13e {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.chimeric.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.chimeric.gdc_realn.bam 19727007 BAM chimeric harmonized CPTAC3 b406fba0-320f-4484-84b3-fdc0022fc23d 958d3bd64dc2111d8d086adc79cac407 {"aliquot_tag": "ALQ_bd82f1d", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.genomic.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.genomic.gdc_realn.bam 8140726365 BAM genomic harmonized CPTAC3 78aacc0b-8fa9-4b74-a9d6-20eec217abc4 252cd3ee1343f06263377ca600973eda {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.RNA-Seq.genomic.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.genomic.gdc_realn.bam 10071719463 BAM genomic harmonized CPTAC3 8277c156-7d5c-422d-911f-80ccd656514c 8524b8c5ec90eea2c2c4a3fa06a9e9c2 {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.genomic.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.genomic.gdc_realn.bam 9703965831 BAM genomic harmonized CPTAC3 af3a8f33-49bb-469f-b049-64386b3d2a8c a716a80d956d86bc5be456d4f4546fdd {"aliquot_tag": "ALQ_bd82f1d", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.S12_R1.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R1_001.fastq.gz 4413849755 FASTQ S12_R1 unaligned CPTAC3 2342b369-0752-4115-b300-e95f111028ed a9e6604d3c287bba7932dd3652166254 {"aliquot_tag": "ALQ_bd82f1d", "sample": "S12", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.S12_R2.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R2_001.fastq.gz 5348584965 FASTQ S12_R2 unaligned CPTAC3 63e6f6cd-a573-4122-82a2-af1d4406b2f5 906e65d76022728f57088ccab0cd30f5 {"aliquot_tag": "ALQ_bd82f1d", "sample": "S12", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.S20_L005_R1.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3884614029 FASTQ S20_L005_R1 unaligned CPTAC3 26426145-5d8e-4bd5-91f4-fd0067a030b4 894d3b3f81cf42e5509b2374ca439173 {"aliquot_tag": "ALQ_778b139b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.RNA-Seq.S20_L005_R2.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4380707783 FASTQ S20_L005_R2 unaligned CPTAC3 655fd063-4b4f-44bd-af52-db6a730a6e85 461a0a5e286ed907727dcf1d637b1aee {"aliquot_tag": "ALQ_778b139b", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.RNA-Seq.S8_L002_R1.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R1_001.fastq.gz 4808070607 FASTQ S8_L002_R1 unaligned CPTAC3 45f180f1-f34b-44cd-9d5b-966078330dcf a28528da62515aa3cc5698d71cbce76c {"aliquot_tag": "ALQ_c8bbadfa", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.S8_L002_R2.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R2_001.fastq.gz 4772200498 FASTQ S8_L002_R2 unaligned CPTAC3 57ce3495-0c41-4d75-9766-bcad787552a4 4d4e8efef625ba46fff4e61a09122f96 {"aliquot_tag": "ALQ_c8bbadfa", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.transcriptome.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.transcriptome.gdc_realn.bam 13453709642 BAM transcriptome harmonized CPTAC3 44e58ede-2f32-4802-af4d-e8bcee0f7239 3d610b886d7081c90531125b8a339877 {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.RNA-Seq.transcriptome.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.transcriptome.gdc_realn.bam 12549264193 BAM transcriptome harmonized CPTAC3 de8f99ec-8fc8-499f-a82e-07bef001e450 03051d6cb8b6a3b64f028947568dc507 {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor"} -C3N-03619.RNA-Seq.transcriptome.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.transcriptome.gdc_realn.bam 7954604119 BAM transcriptome harmonized CPTAC3 c9ff6380-4884-4055-a4ed-03a0806052c9 42cc54d00ff4d8ea06cd7cdc49556452 {"aliquot_tag": "ALQ_bd82f1d", "gdc_sample_type": "Primary Tumor"} -C3N-03619.WGS.N C3N-03619 HNSCC WGS blood_normal CPT0195970002 CPT0195970002.WholeGenome.RP-1303.bam 80539719519 BAM aligned CPTAC3 faf6c913-1b41-4749-965d-bf04390b0588 570a7d840ed9e0979cb81f8678f3a40e {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03619.WGS.N.hg38 C3N-03619 HNSCC WGS blood_normal CPT0195970002 43c3ebac-27fa-44dd-960c-59b5836294ae_wgs_gdc_realn.bam 116930583599 BAM harmonized CPTAC3 37263e71-1eea-45d3-8e06-49ea20949b3e 1c8f82608150091bfd9b76a57d147bc0 {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03619.WGS.T C3N-03619 HNSCC WGS tumor CPT0195860009 CPT0195860009.WholeGenome.RP-1303.bam 64407262242 BAM aligned CPTAC3 185626de-667b-4b50-aa37-71b450e01487 a3662fa081a3c2cfc4463c5544ae3949 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor"} -C3N-03619.WGS.T.hg38 C3N-03619 HNSCC WGS tumor CPT0195860009 3d293f91-e107-43e8-a333-959746843119_wgs_gdc_realn.bam 95040697491 BAM harmonized CPTAC3 3fbaebd7-ca3c-461a-bf46-ff6e9087abde f1fb6c15672c904652529c3983bc2eae {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor"} -C3N-03619.WXS.A C3N-03619 HNSCC WXS tissue_normal CPT0195880008 CPT0195880008.WholeExome.RP-1303.bam 35378849232 BAM aligned CPTAC3 1d8119e4-3032-47b5-ad41-30c1188048b2 85440f96793e01c6e337dbcd9a288ff2 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.WXS.A.hg38 C3N-03619 HNSCC WXS tissue_normal CPT0195880008 2433d21b-e57b-4f01-a944-328e8f5e7454_wxs_gdc_realn.bam 49991225335 BAM harmonized CPTAC3 19d425ff-59fb-4bbb-8472-99f9a45f22b4 8271d5cf2f0e1436d97bbce8fd639ef8 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03619.WXS.N C3N-03619 HNSCC WXS blood_normal CPT0195970002 CPT0195970002.WholeExome.RP-1303.bam 19267672932 BAM aligned CPTAC3 a5593572-8592-4157-8bcb-e35185951a1d 82c108a42bc21a16a97c09dd9fca061d {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03619.WXS.N.hg38 C3N-03619 HNSCC WXS blood_normal CPT0195970002 43c3ebac-27fa-44dd-960c-59b5836294ae_wxs_gdc_realn.bam 26882865893 BAM harmonized CPTAC3 4418ac8c-13ba-46b7-b1ab-f1f238dda1da 74a29ec28713cff93e43b00246aac4f1 {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03619.WXS.T C3N-03619 HNSCC WXS tumor CPT0195860009 CPT0195860009.WholeExome.RP-1303.bam 41680330346 BAM aligned CPTAC3 50ce3f7b-3cd7-42e7-9a61-a9b92028ed2a 08f226b50f52c96c39b6d237e07bdc41 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor"} -C3N-03619.WXS.T.hg38 C3N-03619 HNSCC WXS tumor CPT0195860009 3d293f91-e107-43e8-a333-959746843119_wxs_gdc_realn.bam 56961149609 BAM harmonized CPTAC3 2e6e6782-f080-4328-a11f-a3a37fe8807e 11ea34e1d50d4074cb1d6ef3a443a5d2 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor"} -C3N-03620.MethArray.Green.A C3N-03620 HNSCC Methylation_Array tissue_normal CPT0196060006 203219650096_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a2dbd55c-8f17-4e37-b279-2768e90d5df1 833f983d3584963f4d7052845d13351b {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.MethArray.Green.T C3N-03620 HNSCC Methylation_Array tumor CPT0196040009 203271750083_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 94e13915-8c86-4c85-80e2-9b27191b61ba 7e382729af651df919a6656fbc680078 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor"} -C3N-03620.MethArray.Red.A C3N-03620 HNSCC Methylation_Array tissue_normal CPT0196060006 203219650096_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 e0f00e5a-30c9-43bc-bd75-6704d4c81983 33d01a6d93b0dc5166bcf92bdc32a6cf {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.MethArray.Red.T C3N-03620 HNSCC Methylation_Array tumor CPT0196040009 203271750083_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 18d03df0-9233-490b-80fc-5c7f326c7c76 17e5f6d82cc775cf9972458873f6817f {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor"} -C3N-03620.miRNA-Seq.A.hg38 C3N-03620 HNSCC miRNA-Seq tissue_normal CPT0196060009 5e21f7da-d7b1-4235-9be5-fca13fe6048b_mirnaseq_gdc_realn.bam 292614594 BAM harmonized CPTAC3 bdae0446-fe25-4154-b930-550e897b5d13 c893a9e5e5058264359ae239cc17f037 {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.miRNA-Seq.S16_L003_R1.A C3N-03620 HNSCC miRNA-Seq tissue_normal CPT0196060009 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L003_R1_001.unaln.bam 247957301 BAM S16_L003_R1 unaligned CPTAC3 68ddc366-ca6f-4fe2-ba01-cff6fa057fd7 1d8bec9782e4a6f785d6445c6249026e {"aliquot_tag": "ALQ_85bf289b", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.miRNA-Seq.S2_L003_R1.T C3N-03620 HNSCC miRNA-Seq tumor CPT0196040006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L003_R1_001.unaln.bam 278613556 BAM S2_L003_R1 unaligned CPTAC3 77f4cb46-4606-49ec-9dd0-01cd7ce52891 c212f53736e0cfaabd6d22dd606545c2 {"aliquot_tag": "ALQ_6fc0666a", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03620.miRNA-Seq.T.hg38 C3N-03620 HNSCC miRNA-Seq tumor CPT0196040006 6809cfbd-961f-4c61-8ef8-ba373224d3fd_mirnaseq_gdc_realn.bam 306171844 BAM harmonized CPTAC3 ecb16fce-591c-49ff-a929-f9478ba99513 8b59eabd1ed867e0b28efe6fe8758e7a {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.chimeric.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.chimeric.gdc_realn.bam 106201699 BAM chimeric harmonized CPTAC3 10393522-aabf-47b2-89c8-e8927091963d caf7903b615d5ad81575664cecdfc8c7 {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.RNA-Seq.chimeric.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.chimeric.gdc_realn.bam 341112205 BAM chimeric harmonized CPTAC3 8aac3009-a874-4044-b78c-a6bb1d525df5 353ddfd216ae738982843ba920c23582 {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.chimeric.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.chimeric.gdc_realn.bam 44729177 BAM chimeric harmonized CPTAC3 9147a272-5433-4347-a44f-be7291bc2cdd d1d34873bc2eb8af5bf465a209ca7db3 {"aliquot_tag": "ALQ_2d4f2f89", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.genomic.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.genomic.gdc_realn.bam 9086424289 BAM genomic harmonized CPTAC3 92536091-c436-4f76-9c6a-e443c419435f 13170a39d936a10d0f136800bee3d42e {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.RNA-Seq.genomic.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.genomic.gdc_realn.bam 8803420795 BAM genomic harmonized CPTAC3 590224ab-eac6-47e7-88d3-c41f36dbf423 222b9cdc029b960072ce6148d6044ad0 {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.genomic.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.genomic.gdc_realn.bam 8394680505 BAM genomic harmonized CPTAC3 3d4b0d69-f2ad-499b-92e9-7218b4c19719 34730347c70fe9782896b9fee25abab8 {"aliquot_tag": "ALQ_2d4f2f89", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.S22_L006_R1.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4474669107 FASTQ S22_L006_R1 unaligned CPTAC3 c6c8ddb3-8b66-44ad-af9d-b431a1160455 ab0be6fccbd59abd74dda9f2267239fe {"aliquot_tag": "ALQ_85bf289b", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.RNA-Seq.S22_L006_R2.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4558418470 FASTQ S22_L006_R2 unaligned CPTAC3 5eee2bc0-0147-4040-a102-ad2b48914fd5 b418936bb657cc3e373578161923459f {"aliquot_tag": "ALQ_85bf289b", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.RNA-Seq.S32_R1.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R1_001.fastq.gz 4438347595 FASTQ S32_R1 unaligned CPTAC3 d3ac1a9d-1e0b-4dc6-a67b-624659a500d1 0234675d9a532020aaa8de264cd4900c {"aliquot_tag": "ALQ_2d4f2f89", "sample": "S32", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.S32_R2.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R2_001.fastq.gz 4680024141 FASTQ S32_R2 unaligned CPTAC3 cbfacd37-5f5c-4541-bc38-70fbdd73c3d7 6c1ef86141d15165733c55a378068eef {"aliquot_tag": "ALQ_2d4f2f89", "sample": "S32", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.S7_L002_R1.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R1_001.fastq.gz 4201795294 FASTQ S7_L002_R1 unaligned CPTAC3 f9182b2a-3f82-4cb2-9fce-04d4ec52d12c 734832dbfb7116d1a8bdabd169fdac39 {"aliquot_tag": "ALQ_6fc0666a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.S7_L002_R2.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R2_001.fastq.gz 4618291871 FASTQ S7_L002_R2 unaligned CPTAC3 b1e05041-835d-4a7c-9ed4-6c26cfcec65d 45f85d3fe2d364eb93c9e845a8949929 {"aliquot_tag": "ALQ_6fc0666a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.transcriptome.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.transcriptome.gdc_realn.bam 12956692466 BAM transcriptome harmonized CPTAC3 e00d1560-0a8c-4b05-9707-7972479d3679 77d6965e74b6b14c77de75cf1171adcd {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.RNA-Seq.transcriptome.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.transcriptome.gdc_realn.bam 11697653369 BAM transcriptome harmonized CPTAC3 6e4b0938-be83-4098-83a9-f4b6c27036a8 e3fd54e1a6dda1b6b3169a48df8862e7 {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor"} -C3N-03620.RNA-Seq.transcriptome.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.transcriptome.gdc_realn.bam 5238719378 BAM transcriptome harmonized CPTAC3 e9444cb8-6a1e-41a2-9ea8-10f88252b587 f22e2e4832bfe6efe94be8536893d092 {"aliquot_tag": "ALQ_2d4f2f89", "gdc_sample_type": "Primary Tumor"} -C3N-03620.WGS.N C3N-03620 HNSCC WGS blood_normal CPT0196150002 CPT0196150002.WholeGenome.RP-1303.bam 69775404033 BAM aligned CPTAC3 6eb12754-b0f6-4b8d-aabb-40106db5f7da 73beed9e2b1088bf4a69295ef814d62d {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal"} -C3N-03620.WGS.N.hg38 C3N-03620 HNSCC WGS blood_normal CPT0196150002 ef04af76-839e-4c25-865a-2d38baa77ab2_wgs_gdc_realn.bam 103195179411 BAM harmonized CPTAC3 2697fc85-d00b-43cf-947e-52ef825d7970 a56f98643333f1d363d4afa9c2fb2b54 {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal"} -C3N-03620.WGS.T C3N-03620 HNSCC WGS tumor CPT0196040009 CPT0196040009.WholeGenome.RP-1303.bam 77825353336 BAM aligned CPTAC3 404bde09-2cdc-458f-92cd-d53d3aa9c452 a042be1b128848c98875376285ffbec5 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor"} -C3N-03620.WGS.T.hg38 C3N-03620 HNSCC WGS tumor CPT0196040009 62ff7145-4160-4cd7-9e57-b0e04f57bb72_wgs_gdc_realn.bam 114894719400 BAM harmonized CPTAC3 02fd5648-66ae-4a1c-be92-6105ee5055d2 0752d17bdfde6b66b5fc6366c756e1f2 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor"} -C3N-03620.WXS.A C3N-03620 HNSCC WXS tissue_normal CPT0196060006 CPT0196060006.WholeExome.RP-1303.bam 42854783721 BAM aligned CPTAC3 f6a22300-412c-42f6-8810-7070326df201 1176662c6696e0b856086f2d77640aeb {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.WXS.A.hg38 C3N-03620 HNSCC WXS tissue_normal CPT0196060006 16321a4d-3a0e-440e-bb64-adada482dde4_wxs_gdc_realn.bam 59695627408 BAM harmonized CPTAC3 d7f39d5e-2ff1-4bfc-8fed-c3d4cc1df77f b88f440523bfab156a02a6c3de57e403 {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03620.WXS.N C3N-03620 HNSCC WXS blood_normal CPT0196150002 CPT0196150002.WholeExome.RP-1303.bam 40122050105 BAM aligned CPTAC3 c27ad8ab-0d2e-44e1-8faf-79837fb81549 a84fb207663e4fe8cbbe73752ea742d6 {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal"} -C3N-03620.WXS.N.hg38 C3N-03620 HNSCC WXS blood_normal CPT0196150002 ef04af76-839e-4c25-865a-2d38baa77ab2_wxs_gdc_realn.bam 55335067879 BAM harmonized CPTAC3 d9496225-ab4f-42be-aaea-ee35e0f7f988 ea13eb1dab49aeab171f307533909960 {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal"} -C3N-03620.WXS.T C3N-03620 HNSCC WXS tumor CPT0196040009 CPT0196040009.WholeExome.RP-1303.bam 34395569304 BAM aligned CPTAC3 8d550e1d-efc7-45ff-ab55-301ba490cc0d 700381823c1c0ec15085cf28442ae709 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor"} -C3N-03620.WXS.T.hg38 C3N-03620 HNSCC WXS tumor CPT0196040009 62ff7145-4160-4cd7-9e57-b0e04f57bb72_wxs_gdc_realn.bam 47606975963 BAM harmonized CPTAC3 f0c44ce3-b75d-408e-b738-44f25c24c0cb 019bb66fa90b6bea6d8b4b2fe856c74e {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor"} -C3N-03662.MethArray.Green.T C3N-03662 LSCC Methylation_Array tumor CPT0219360006 203219650165_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bba63a26-c72f-427d-a177-6ca2985bd4ea f2d46f6a08361a814244660ab1fbc5b1 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor"} -C3N-03662.MethArray.Red.T C3N-03662 LSCC Methylation_Array tumor CPT0219360006 203219650165_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 da622305-b177-4fa1-9bc7-b5772d4a54ba 68d7142c1fa2f373e05efb646c93b2a8 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor"} -C3N-03662.miRNA-Seq.S1_L003_R1.T C3N-03662 LSCC miRNA-Seq tumor CPT0219360009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L003_R1_001.unaln.bam 156706673 BAM S1_L003_R1 unaligned CPTAC3 4afbe82e-1024-4102-98b8-705aca20a693 a974ad96bf21a7cc66d6e9600d92dd66 {"aliquot_tag": "ALQ_1f0b0dac", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03662.miRNA-Seq.T.hg38 C3N-03662 LSCC miRNA-Seq tumor CPT0219360009 e06766bd-6776-461a-b1f4-3992cb06bc5e_mirnaseq_gdc_realn.bam 174889646 BAM harmonized CPTAC3 1e74f949-bbb5-4dc7-9c51-b878c67b3d47 ff4388df5f94ecca3fad84ef991f3e01 {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor"} -C3N-03662.RNA-Seq.chimeric.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.chimeric.gdc_realn.bam 185627489 BAM chimeric harmonized CPTAC3 4774a773-1519-43d9-9d93-e9520cc8795d 4d0a0304e06589add0533915013c2b54 {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor"} -C3N-03662.RNA-Seq.genomic.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.genomic.gdc_realn.bam 8220417261 BAM genomic harmonized CPTAC3 60dcb910-968c-41ae-88c8-02f6f2761aba d007679c7f7214aab4ae988dcfe42e5e {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor"} -C3N-03662.RNA-Seq.S9_L008_R1.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R1_001.fastq.gz 3708953372 FASTQ S9_L008_R1 unaligned CPTAC3 240c7214-e86d-4c8b-aaa2-e18fd1b9ba99 584e38215fdf1ac84f65135dd6ed8ff8 {"aliquot_tag": "ALQ_1f0b0dac", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03662.RNA-Seq.S9_L008_R2.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R2_001.fastq.gz 3671554318 FASTQ S9_L008_R2 unaligned CPTAC3 74607372-0396-4558-b39b-64c0b5a93226 607f7c29000bc9e67bb852ad14baca80 {"aliquot_tag": "ALQ_1f0b0dac", "sample": "S9", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03662.RNA-Seq.transcriptome.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.transcriptome.gdc_realn.bam 7633633734 BAM transcriptome harmonized CPTAC3 7fb60673-ef38-433a-bdd7-06cdeb2213f9 ac2231638d786d6b77cc7d5779331037 {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor"} -C3N-03662.WGS.N C3N-03662 LSCC WGS blood_normal CPT0219480002 CPT0219480002.WholeGenome.RP-1303.bam 60839750259 BAM aligned CPTAC3 9d2c118b-d451-4a19-a394-24e3b96c333b 94ec631a5cd3b44222d3a634edc39981 {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03662.WGS.N.hg38 C3N-03662 LSCC WGS blood_normal CPT0219480002 eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wgs_gdc_realn.bam 88929296282 BAM harmonized CPTAC3 2ced49b5-6daa-47a3-985c-0f1837fed681 050222b829d752557ee0998f99da31ce {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03662.WGS.T C3N-03662 LSCC WGS tumor CPT0219360006 CPT0219360006.WholeGenome.RP-1303.bam 55329208636 BAM aligned CPTAC3 5c3370c8-91bf-4f15-ac8c-d7b155e8f734 40e68e9e7ef6782bb37c8871c8e6cb3d {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor"} -C3N-03662.WGS.T.hg38 C3N-03662 LSCC WGS tumor CPT0219360006 aabb4a27-736d-45c1-b5d2-e22def394b17_wgs_gdc_realn.bam 79956157417 BAM harmonized CPTAC3 8a0611ae-7f51-44bc-9342-0eec4b3bed3b cdcb3d3dd07da2f8820fa6d346a7cde4 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor"} -C3N-03662.WXS.N C3N-03662 LSCC WXS blood_normal CPT0219480002 CPT0219480002.WholeExome.RP-1303.bam 24083532552 BAM aligned CPTAC3 98ee178f-2c1f-4ae3-b081-ed6c307e7f6f 9e6798c4cccdc086cfe484613e079eb7 {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03662.WXS.N.hg38 C3N-03662 LSCC WXS blood_normal CPT0219480002 eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wxs_gdc_realn.bam 33800637186 BAM harmonized CPTAC3 ad8e0486-8b7e-4813-a620-d65d6a288451 9d86713118741d0639b8eef5d1d6123b {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03662.WXS.T C3N-03662 LSCC WXS tumor CPT0219360006 CPT0219360006.WholeExome.RP-1303.bam 30682011556 BAM aligned CPTAC3 b3dc7719-8647-49b1-9635-09fe050126c5 c09c4ca01e35ec46d241fb27cfcbc569 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor"} -C3N-03662.WXS.T.hg38 C3N-03662 LSCC WXS tumor CPT0219360006 aabb4a27-736d-45c1-b5d2-e22def394b17_wxs_gdc_realn.bam 42799894376 BAM harmonized CPTAC3 0936aaa1-ffba-4b18-94a3-71e907a0f948 c607edbf1194e2ffcf04cd79aff61b69 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor"} -C3N-03664.MethArray.Green.T C3N-03664 HNSCC Methylation_Array tumor CPT0196210009 203273200110_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a3a56c7e-de5e-4b68-a977-28ec1dd727f2 e389b00def04a1b4b0e2e59c165af03c {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor"} -C3N-03664.MethArray.Red.T C3N-03664 HNSCC Methylation_Array tumor CPT0196210009 203273200110_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 039c47db-16fb-44b7-a74e-09975bc9cb7e 16ba192752290920e64a1440ab54b15a {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor"} -C3N-03664.miRNA-Seq.S3_L003_R1.T C3N-03664 HNSCC miRNA-Seq tumor CPT0196210006 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L003_R1_001.unaln.bam 216720616 BAM S3_L003_R1 unaligned CPTAC3 737e5013-b4db-4ca9-9f6f-d3121875798b 9bc30b261f235a8c7d24231abcde9dff {"aliquot_tag": "ALQ_eae84811", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03664.miRNA-Seq.T.hg38 C3N-03664 HNSCC miRNA-Seq tumor CPT0196210006 d43771b5-fe0e-4c5a-9ec0-d6bdfa4c6108_mirnaseq_gdc_realn.bam 238724317 BAM harmonized CPTAC3 6f6c61f0-a6d1-42c6-94f5-ff9b62897af6 f369541220f7016582a098af83c9213c {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.chimeric.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.chimeric.gdc_realn.bam 313182026 BAM chimeric harmonized CPTAC3 e2a7294f-4ce7-442c-8a80-b64229d3979f 599437fd5d933a8b637317520a61090b {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.chimeric.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.chimeric.gdc_realn.bam 104375043 BAM chimeric harmonized CPTAC3 37b45ea4-6558-4f22-8763-c8255dd55b91 b70fde331b1d0e7417868677cc309400 {"aliquot_tag": "ALQ_98174a33", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.genomic.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.genomic.gdc_realn.bam 8517599165 BAM genomic harmonized CPTAC3 38c631a8-7d57-4512-8c66-7a051a278bd4 31fb0c7cfc1f95ebd620c2f51c54f5fc {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.genomic.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.genomic.gdc_realn.bam 6727955624 BAM genomic harmonized CPTAC3 09d6300b-4c7c-49bd-bea8-1e25204bfcc3 1fea0569580552b1d436d933edd67842 {"aliquot_tag": "ALQ_98174a33", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.S19_R1.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R1_001.fastq.gz 4210695987 FASTQ S19_R1 unaligned CPTAC3 431c6831-fb98-4b46-adbc-870923a81a7a b48981f0520f5ec0921943427aaffd53 {"aliquot_tag": "ALQ_98174a33", "sample": "S19", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.S19_R2.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R2_001.fastq.gz 4313743776 FASTQ S19_R2 unaligned CPTAC3 9c03fb3f-0d0e-448e-af0e-a05027feda71 45a2fc3b99faf27c76ac5aa58460ed93 {"aliquot_tag": "ALQ_98174a33", "sample": "S19", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.S6_L002_R1.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R1_001.fastq.gz 3996768137 FASTQ S6_L002_R1 unaligned CPTAC3 0b6603c5-2b74-4ac3-baf2-a198861141cc 31b0b7903a454f56c702bb7f177be73a {"aliquot_tag": "ALQ_eae84811", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.S6_L002_R2.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R2_001.fastq.gz 4427155254 FASTQ S6_L002_R2 unaligned CPTAC3 f10b2fb9-e10b-4d85-b43d-04af9bbf70fc cea23030bc7b72624b941eba24d0036d {"aliquot_tag": "ALQ_eae84811", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.transcriptome.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.transcriptome.gdc_realn.bam 11540362774 BAM transcriptome harmonized CPTAC3 50476465-c470-423b-8c39-c02b9ed39d5d 757bd4e10185cb22417272a05cb9a02b {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor"} -C3N-03664.RNA-Seq.transcriptome.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.transcriptome.gdc_realn.bam 4277971072 BAM transcriptome harmonized CPTAC3 e19e7eca-e8f2-40a4-ae10-a1c9c3db0f55 bf0482eb40b02e38709228327f3a54cd {"aliquot_tag": "ALQ_98174a33", "gdc_sample_type": "Primary Tumor"} -C3N-03664.WGS.N C3N-03664 HNSCC WGS blood_normal CPT0196330002 CPT0196330002.WholeGenome.RP-1303.bam 67737829626 BAM aligned CPTAC3 0f503909-d6f8-4b98-9ed4-6da82f2bbe23 c8aec7f17a4ca9459db4f31f46d76ec3 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03664.WGS.N.hg38 C3N-03664 HNSCC WGS blood_normal CPT0196330002 87278be5-880b-403e-96ef-4556bc85a926_wgs_gdc_realn.bam 97245040114 BAM harmonized CPTAC3 ce108c0f-e488-4b39-bd3d-1614c8e4e9f2 e1b5317fc1f8ab7f423d3b5b1c10b657 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03664.WGS.T C3N-03664 HNSCC WGS tumor CPT0196210009 CPT0196210009.WholeGenome.RP-1303.bam 78907430986 BAM aligned CPTAC3 c55a97c7-50fb-4fd1-9d58-34a7f6204c3c c55dece2394b5a455f4f6a580910d247 {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor"} -C3N-03664.WGS.T.hg38 C3N-03664 HNSCC WGS tumor CPT0196210009 3908eb72-303d-4316-b8a6-41f76e1bbed5_wgs_gdc_realn.bam 114025064950 BAM harmonized CPTAC3 b1d07e06-bcf0-4001-932a-ddac51bbbfa3 a8c712b144814d49f7efc430ea057c7f {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor"} -C3N-03664.WXS.N C3N-03664 HNSCC WXS blood_normal CPT0196330002 CPT0196330002.WholeExome.RP-1303.bam 20562656998 BAM aligned CPTAC3 d1ab1f74-e808-4307-8f00-57e8ac74c5ed 0c6dc8cf84661fe32e1fde3150324428 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03664.WXS.N.hg38 C3N-03664 HNSCC WXS blood_normal CPT0196330002 87278be5-880b-403e-96ef-4556bc85a926_wxs_gdc_realn.bam 28517582735 BAM harmonized CPTAC3 00263335-42b0-4fd9-9dc3-54ae6c22bc5c d14047578deb033b8db03bad28176061 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03664.WXS.T C3N-03664 HNSCC WXS tumor CPT0196210009 CPT0196210009.WholeExome.RP-1303.bam 24341026552 BAM aligned CPTAC3 b3462b46-5189-4941-aa28-bad36438c73e 824e7c895d1f1f2f67adb59163a0282a {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor"} -C3N-03664.WXS.T.hg38 C3N-03664 HNSCC WXS tumor CPT0196210009 3908eb72-303d-4316-b8a6-41f76e1bbed5_wxs_gdc_realn.bam 33328496810 BAM harmonized CPTAC3 ec399f46-c282-4923-8744-252b8bc15d3c d65c7e70ff587d8dd9ce177bb5e7554a {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor"} -C3N-03665.MethArray.Green.T C3N-03665 PDA Methylation_Array tumor CPT0226760007 203561620049_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 0dde8133-ccfe-4bf6-a54c-405cd3548eb1 18da1d006bb06c2072c7503ec0066f0c {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor"} -C3N-03665.MethArray.Red.T C3N-03665 PDA Methylation_Array tumor CPT0226760007 203561620049_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 47c90785-8de9-4f25-b959-52654727d911 d32ea30086c49455c67451bf9377d3b8 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor"} -C3N-03665.miRNA-Seq.S37_L004_R1.T C3N-03665 PDA miRNA-Seq tumor CPT0226760010 190813_UNC32-K00270_0196_AH5MCWBBXY_ACTTGA_S37_L004_R1_001.unaln.bam 529849778 BAM S37_L004_R1 unaligned CPTAC3 901b4de0-6074-46f0-8a37-1814179588cc 275d1b5b7c0da9ae4ffef7ac2f1e5431 {"aliquot_tag": "ALQ_9c9ab155", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03665.miRNA-Seq.T.hg38 C3N-03665 PDA miRNA-Seq tumor CPT0226760010 f267e13b-6548-4b97-9fab-0c90044775d8_mirnaseq_gdc_realn.bam 590655875 BAM harmonized CPTAC3 6146e431-ad3b-424f-9499-851aa31d4e24 523998ab7057032d0c8e05192ef38284 {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor"} -C3N-03665.RNA-Seq.chimeric.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.chimeric.gdc_realn.bam 114374577 BAM chimeric harmonized CPTAC3 c8f98cce-cbb5-47f3-8d9f-a9ec26b68db2 c53f44c80301689039b92c1cfe56b6bc {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor"} -C3N-03665.RNA-Seq.genomic.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.genomic.gdc_realn.bam 6276418354 BAM genomic harmonized CPTAC3 37b10f77-306f-4b1a-9ef7-355a17c705ee 2c456162d11c9fd1f1baf8126ffadbfe {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor"} -C3N-03665.RNA-Seq.S5_L002_R1.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R1_001.fastq.gz 2196094856 FASTQ S5_L002_R1 unaligned CPTAC3 a8afbdde-3a80-43ee-acc6-e5a39caa4a94 521057f419d8fd4c058b91e1f6138164 {"aliquot_tag": "ALQ_9c9ab155", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03665.RNA-Seq.S5_L002_R2.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R2_001.fastq.gz 2177876854 FASTQ S5_L002_R2 unaligned CPTAC3 26a833e9-1895-4c79-b299-a64162b49ee2 764d369e05046a22a3b8b5793698b037 {"aliquot_tag": "ALQ_9c9ab155", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03665.RNA-Seq.transcriptome.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.transcriptome.gdc_realn.bam 4928449211 BAM transcriptome harmonized CPTAC3 bd07199d-ec91-418b-856f-1e6d6b16ccc1 5bd10e4715944d9bfe6d7546f33aa5ef {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor"} -C3N-03665.WGS.N C3N-03665 PDA WGS blood_normal CPT0226800002 CPT0226800002.WholeGenome.RP-1303.bam 75055670922 BAM aligned CPTAC3 0c9b85ac-0698-45f3-826f-96e9cb83a4ea c2ee090850bdb4720d0de6c5206209d5 {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03665.WGS.N.hg38 C3N-03665 PDA WGS blood_normal CPT0226800002 1cdbcb35-ccb2-4bbe-9adb-1ac5f24201c2_wgs_gdc_realn.bam 111106725361 BAM harmonized CPTAC3 c014d68a-265f-49a4-bc80-b378e2593931 33ac58df80d5edcedf98c4be74ca4729 {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03665.WGS.T C3N-03665 PDA WGS tumor CPT0226760007 CPT0226760007.WholeGenome.RP-1303.bam 117102266566 BAM aligned CPTAC3 525e9e3b-f1d1-414a-b0e7-7a055c00c5b4 644c7b2037cdf980b73ee006bc9e2fb6 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor"} -C3N-03665.WGS.T.hg38 C3N-03665 PDA WGS tumor CPT0226760007 02ccbf9d-f299-4000-8151-97a51c2a74f7_wgs_gdc_realn.bam 169763195987 BAM harmonized CPTAC3 0b9b3093-734e-43dd-9fdd-a54d9bc67e1f 28ac01ca292d4953c0cf618f606e4376 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor"} -C3N-03665.WXS.N C3N-03665 PDA WXS blood_normal CPT0226800002 CPT0226800002.WholeExome.RP-1303.bam 27321595222 BAM aligned CPTAC3 2b9cd551-30b7-4775-b7c9-4223da31f48b efd431e9cf9d76230cc65d75ce0f9ff8 {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03665.WXS.N.hg38 C3N-03665 PDA WXS blood_normal CPT0226800002 1cdbcb35-ccb2-4bbe-9adb-1ac5f24201c2_wxs_gdc_realn.bam 37824355074 BAM harmonized CPTAC3 a1709132-3aa6-4c2e-b1b4-8adb05be8667 c1a1911c70add40bb93e0fe5e07eb63b {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03665.WXS.T C3N-03665 PDA WXS tumor CPT0226760007 CPT0226760007.WholeExome.RP-1303.bam 46248451357 BAM aligned CPTAC3 e0ba04bd-ebed-4d3b-9f4c-c46d0f1bbeca e5b6a4f9cc5807222098e2a2ef168edc {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor"} -C3N-03665.WXS.T.hg38 C3N-03665 PDA WXS tumor CPT0226760007 02ccbf9d-f299-4000-8151-97a51c2a74f7_wxs_gdc_realn.bam 65029406677 BAM harmonized CPTAC3 30c2bec6-df19-4331-b7cb-4cb0c9715f91 6036e15a06fe7d1c9ec588bc82a0af67 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor"} -C3N-03666.MethArray.Green.T C3N-03666 PDA Methylation_Array tumor CPT0246720006 203561450048_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dddc4258-cdb6-4ba7-9594-b2f7b3bcb2bc c417653f0fc7132bff410e72d432f435 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor"} -C3N-03666.MethArray.Red.T C3N-03666 PDA Methylation_Array tumor CPT0246720006 203561450048_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 061e061a-16b0-4db9-a513-a6686cf43c03 acc132872264a15564dc97b4a82ae4e2 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor"} -C3N-03666.miRNA-Seq.S38_L004_R1.T C3N-03666 PDA miRNA-Seq tumor CPT0246720009 190813_UNC32-K00270_0196_AH5MCWBBXY_GATCAG_S38_L004_R1_001.unaln.bam 114279935 BAM S38_L004_R1 unaligned CPTAC3 80c001c1-d6b6-48dd-bb8b-c1004b5fe7f2 fd185d5d6dbaa6cd7282a5eeaea1a133 {"aliquot_tag": "ALQ_cfb297f7", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03666.miRNA-Seq.T.hg38 C3N-03666 PDA miRNA-Seq tumor CPT0246720009 ffca87bf-40ec-444f-b020-6d7e9131e27a_mirnaseq_gdc_realn.bam 128370410 BAM harmonized CPTAC3 30122042-6ade-4181-9390-4195edd77a0d 341b11aae97c53aec7fb6d2624034bae {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor"} -C3N-03666.RNA-Seq.chimeric.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.chimeric.gdc_realn.bam 194242212 BAM chimeric harmonized CPTAC3 9cbf529f-8ec7-402a-9cb4-10fbef44ba6b 6c0f3d799d76489a6b8b7f0bc87391c0 {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor"} -C3N-03666.RNA-Seq.genomic.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.genomic.gdc_realn.bam 9583938271 BAM genomic harmonized CPTAC3 1d72cd14-a769-4d61-a211-51be7b29445c 608773a7e0753cbfabbbb5b3c7c61161 {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor"} -C3N-03666.RNA-Seq.S6_L002_R1.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R1_001.fastq.gz 3500155043 FASTQ S6_L002_R1 unaligned CPTAC3 3c57a676-0929-41e7-990d-ebbaddcac4ac 6a5c08f98704bc684083bd042c09e1eb {"aliquot_tag": "ALQ_cfb297f7", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03666.RNA-Seq.S6_L002_R2.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R2_001.fastq.gz 3550554483 FASTQ S6_L002_R2 unaligned CPTAC3 fdc0fe85-8190-465c-8fa0-e567516bbcb0 2d4bd8db25cefed54dc5d241d70a6fc3 {"aliquot_tag": "ALQ_cfb297f7", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03666.RNA-Seq.transcriptome.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.transcriptome.gdc_realn.bam 8585105528 BAM transcriptome harmonized CPTAC3 7bcb326d-3dd5-4a70-8d2c-a0969d87f52f 58823040e11f57d046c7599db8c7e53b {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor"} -C3N-03666.WGS.N C3N-03666 PDA WGS blood_normal CPT0246740002 CPT0246740002.WholeGenome.RP-1303.bam 88931873947 BAM aligned CPTAC3 f392cacb-eb4c-43c1-a249-5c5ef52f9f35 b5190464e77ac1989a58568a9c9b74d8 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03666.WGS.N.hg38 C3N-03666 PDA WGS blood_normal CPT0246740002 57b9c161-c170-4d92-b1e7-9aa2076a3620_wgs_gdc_realn.bam 131263793197 BAM harmonized CPTAC3 375a0b1a-aa78-4da8-b09e-fd6c0f11c2a2 36bc03488c1ddf11dd74534a52fa6d75 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03666.WGS.T C3N-03666 PDA WGS tumor CPT0246720006 CPT0246720006.WholeGenome.RP-1303.bam 150907971349 BAM aligned CPTAC3 f82d592b-97c7-46f1-b337-94f33b4b2ace 239a52aec56cc3996672a9e302b4f220 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor"} -C3N-03666.WGS.T.hg38 C3N-03666 PDA WGS tumor CPT0246720006 6ebdb367-7716-43e2-8844-7324f28daf3e_wgs_gdc_realn.bam 221648475397 BAM harmonized CPTAC3 518b86dc-9f49-4751-bf48-7cc3acb34044 bc0ffb0d755879bb7460cfae99583622 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor"} -C3N-03666.WXS.N C3N-03666 PDA WXS blood_normal CPT0246740002 CPT0246740002.WholeExome.RP-1303.bam 22537936406 BAM aligned CPTAC3 2e287eee-2cd5-47c7-91f0-0703b206977f 4d609460f92a4b7c0fd3aea6ad582ca9 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03666.WXS.N.hg38 C3N-03666 PDA WXS blood_normal CPT0246740002 57b9c161-c170-4d92-b1e7-9aa2076a3620_wxs_gdc_realn.bam 31327402706 BAM harmonized CPTAC3 6b33e1de-f76b-45e5-b4d6-1bd880413d8c c2439fec55c6887c3891e9f5eff25516 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03666.WXS.T C3N-03666 PDA WXS tumor CPT0246720006 CPT0246720006.WholeExome.RP-1303.bam 41528542052 BAM aligned CPTAC3 45dae827-2067-40ee-b306-328d0019886d d7433766caace4213b45f8201c9e6896 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor"} -C3N-03666.WXS.T.hg38 C3N-03666 PDA WXS tumor CPT0246720006 6ebdb367-7716-43e2-8844-7324f28daf3e_wxs_gdc_realn.bam 58457795249 BAM harmonized CPTAC3 f66e212d-0780-46d2-8b2c-d8cb46abd074 ed385706b105643230ee8c38908a801a {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor"} -C3N-03670.MethArray.Green.A C3N-03670 PDA Methylation_Array tissue_normal CPT0246850006 203561450114_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc858e08-934c-4cfe-87c2-a7a50f96524d 0ee1edcbd319c4963471835e2a20b13d {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03670.MethArray.Green.T C3N-03670 PDA Methylation_Array tumor CPT0246840006 203561450027_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 cf0f96e9-ae27-4205-9772-d051827819ee 3cf006c98db01abcdf2e900a0e109c1d {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor"} -C3N-03670.MethArray.Red.A C3N-03670 PDA Methylation_Array tissue_normal CPT0246850006 203561450114_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 9006718f-c4f6-44d1-8bd4-bc868d470497 5da113e2b5e8db7423d4df24532df6f1 {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03670.MethArray.Red.T C3N-03670 PDA Methylation_Array tumor CPT0246840006 203561450027_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 8234e634-be39-4afc-8f6b-9fb700b9695e 877e51c601f8f7d4eeb983a843bf32be {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor"} -C3N-03670.miRNA-Seq.S45_L002_R1.T C3N-03670 PDA miRNA-Seq tumor CPT0246840013 190813_UNC32-K00270_0196_AH5MCWBBXY_CCGTCC_S45_L002_R1_001.unaln.bam 172881467 BAM S45_L002_R1 unaligned CPTAC3 31ee2725-b9b6-46a6-871f-627b7f6e209b 416ad9ed9c23bd3e2b4299c0f9d53fc6 {"aliquot_tag": "ALQ_486a08dd", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03670.miRNA-Seq.T.hg38 C3N-03670 PDA miRNA-Seq tumor CPT0246840013 31bed28f-8560-4e83-b187-c8446056d700_mirnaseq_gdc_realn.bam 196558200 BAM harmonized CPTAC3 537a274e-fad7-4b73-a7bc-c5c74c37f986 5bc52cc3912c17a39757bcbc716783e6 {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor"} -C3N-03670.RNA-Seq.chimeric.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.chimeric.gdc_realn.bam 307129724 BAM chimeric harmonized CPTAC3 6c87f9fb-5c26-47f3-8e50-9a70a736b75d ae251909a6b18a786cefea27ce61507d {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor"} -C3N-03670.RNA-Seq.genomic.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.genomic.gdc_realn.bam 10729266074 BAM genomic harmonized CPTAC3 d46b4236-1774-4536-99b2-a4eae25bdf20 a128e2b7a79a618c09cb7dc4f6a82037 {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor"} -C3N-03670.RNA-Seq.S18_L005_R1.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R1_001.fastq.gz 4364268270 FASTQ S18_L005_R1 unaligned CPTAC3 f7dbacf3-01dc-48c9-b9a2-87c26c8a7174 bdb5c850f56727d9dfda4bee6bca1826 {"aliquot_tag": "ALQ_486a08dd", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03670.RNA-Seq.S18_L005_R2.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R2_001.fastq.gz 4521112708 FASTQ S18_L005_R2 unaligned CPTAC3 e07b6519-b4db-4cb9-b73d-2e5779e5f8b8 83ec8534f530e9a50ebc588701a394c6 {"aliquot_tag": "ALQ_486a08dd", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03670.RNA-Seq.transcriptome.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.transcriptome.gdc_realn.bam 10034474191 BAM transcriptome harmonized CPTAC3 2d6c2d0e-c31d-440f-85eb-1a5da3c71082 190d39f819b743234b47fe9865f02ffc {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor"} -C3N-03670.WGS.N C3N-03670 PDA WGS blood_normal CPT0246880002 CPT0246880002.WholeGenome.RP-1303.bam 64325394775 BAM aligned CPTAC3 0c9769de-17a6-4958-bbeb-73a5c567289d 165005776c1ad2858eb691ca4749ed05 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03670.WGS.N.hg38 C3N-03670 PDA WGS blood_normal CPT0246880002 c23854b5-45f9-401f-a1b1-c0ac92ee4218_wgs_gdc_realn.bam 93012518314 BAM harmonized CPTAC3 d043299a-cfda-453b-856f-d1d1b9340163 857122b585ba786bb0f6e18deff64db5 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03670.WGS.T C3N-03670 PDA WGS tumor CPT0246840006 CPT0246840006.WholeGenome.RP-1303.PDO-18613.bam 101977217516 BAM aligned CPTAC3 884b7b47-a6ea-431a-bf2e-1ca08d84d0e1 1ed4a834c2415657f2ecce45c6cb7ea4 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor"} -C3N-03670.WGS.T.hg38 C3N-03670 PDA WGS tumor CPT0246840006 4c7477bc-e957-44e2-8ab3-7f2c1d35244c_wgs_gdc_realn.bam 149065074904 BAM harmonized CPTAC3 33ff3f50-035b-4378-a15c-a53256e81cda 75239bd325230dd971adbf6eb1fc00b1 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor"} -C3N-03670.WXS.A C3N-03670 PDA WXS tissue_normal CPT0246850006 CPT0246850006.WholeExome.RP-1303.bam 21012445637 BAM aligned CPTAC3 f8466c58-2190-4081-87b2-b6c69b6f149a 3c52165835fa49e9b6f236a895b413b5 {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03670.WXS.A.hg38 C3N-03670 PDA WXS tissue_normal CPT0246850006 8355b4b3-994b-48aa-8d81-a324ccef1cf9_wxs_gdc_realn.bam 29264389099 BAM harmonized CPTAC3 148d4140-4b8f-4826-87c5-fa7e2f2810ed 22299e82903a4809bf79ba2513ef1294 {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03670.WXS.N C3N-03670 PDA WXS blood_normal CPT0246880002 CPT0246880002.WholeExome.RP-1303.bam 26751763847 BAM aligned CPTAC3 d653856d-eddc-429b-9bc9-0526c237b014 1d0943af67adc6e999088e199d2a2bf4 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03670.WXS.N.hg38 C3N-03670 PDA WXS blood_normal CPT0246880002 c23854b5-45f9-401f-a1b1-c0ac92ee4218_wxs_gdc_realn.bam 36617873511 BAM harmonized CPTAC3 3bf6cf4c-6846-4ed1-9608-df4f1f1b7186 be0ecc71b2117c4f8b1a630c870ccbe6 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03670.WXS.T C3N-03670 PDA WXS tumor CPT0246840006 CPT0246840006.WholeExome.RP-1303.bam 25183206939 BAM aligned CPTAC3 61e0b96b-c812-4407-af05-0e062b7b30e9 97b0bfe309f5dba3a2a05333d4d31233 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor"} -C3N-03670.WXS.T.hg38 C3N-03670 PDA WXS tumor CPT0246840006 4c7477bc-e957-44e2-8ab3-7f2c1d35244c_wxs_gdc_realn.bam 34734834297 BAM harmonized CPTAC3 3ed81439-72db-4007-9000-e1fe6c5f1d28 4d558d6fc034c94a2bf7f7515bcd2865 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor"} -C3N-03754.MethArray.Green.T C3N-03754 PDA Methylation_Array tumor CPT0246810006 203273630048_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 348d04c4-bb5c-4d93-a164-9e89972c54ab d375f052c77a3d14723ca574d7ddc91c {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor"} -C3N-03754.MethArray.Red.T C3N-03754 PDA Methylation_Array tumor CPT0246810006 203273630048_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 57a6088e-2f0b-4f33-9460-84dfcaebcbe7 d0103b7bd07eb068146d6d01dc8d1d9a {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor"} -C3N-03754.miRNA-Seq.S44_L002_R1.T C3N-03754 PDA miRNA-Seq tumor CPT0246810013 190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L002_R1_001.unaln.bam 142850165 BAM S44_L002_R1 unaligned CPTAC3 fea0f9a6-bb02-462d-ab92-259fa6940239 4d6f9fa4044b150ce7658631d2ba05c6 {"aliquot_tag": "ALQ_808a87ad", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03754.miRNA-Seq.T.hg38 C3N-03754 PDA miRNA-Seq tumor CPT0246810013 79feb52c-1046-41ef-80f0-7f615c208bac_mirnaseq_gdc_realn.bam 159875379 BAM harmonized CPTAC3 24be9d9e-c424-42b6-b8b0-0d8cf21d75ce 58d4f46920a730e8ccc76072f1d1be81 {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor"} -C3N-03754.RNA-Seq.chimeric.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.chimeric.gdc_realn.bam 260918233 BAM chimeric harmonized CPTAC3 6a86fa71-9b3b-48b6-87a9-34478b586dfe c901836a8989589d7ea41bfbeab3f867 {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor"} -C3N-03754.RNA-Seq.genomic.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.genomic.gdc_realn.bam 10074202536 BAM genomic harmonized CPTAC3 bc5bb2e5-a1ef-42a0-834c-dbfd24050815 226c999f0fbe9dee1a0594e8754a016d {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor"} -C3N-03754.RNA-Seq.S16_L005_R1.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R1_001.fastq.gz 4015495748 FASTQ S16_L005_R1 unaligned CPTAC3 29f82aea-74fc-4ecf-8fda-ef41bb9616ec a274019bd1515c9068707a2548295479 {"aliquot_tag": "ALQ_808a87ad", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03754.RNA-Seq.S16_L005_R2.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R2_001.fastq.gz 4148066863 FASTQ S16_L005_R2 unaligned CPTAC3 9cd965aa-d307-403c-87ba-f695cabbaf9a 43796513dd1bdd6e06d8d02904cc52fd {"aliquot_tag": "ALQ_808a87ad", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03754.RNA-Seq.transcriptome.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.transcriptome.gdc_realn.bam 9943714621 BAM transcriptome harmonized CPTAC3 8315b446-7653-48fd-bcca-9a2328b43354 e8669e6e964bac490c384235c1e79823 {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor"} -C3N-03754.WGS.N C3N-03754 PDA WGS blood_normal CPT0246830002 CPT0246830002.WholeGenome.RP-1303.bam 70034050100 BAM aligned CPTAC3 9b4f5b14-f971-44ec-adcf-225ec70c6046 202f78643db911fe26d6c03ae8e59ce4 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03754.WGS.N.hg38 C3N-03754 PDA WGS blood_normal CPT0246830002 0b6cef8c-b642-4576-bb89-8a8a534064b7_wgs_gdc_realn.bam 101906454360 BAM harmonized CPTAC3 4de225d4-005b-4c18-9132-a4e1c5106a50 78afabd226990c705ff62c0bd8039653 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03754.WGS.T C3N-03754 PDA WGS tumor CPT0246810006 CPT0246810006.WholeGenome.RP-1303.PDO-18613.bam 139477191418 BAM aligned CPTAC3 ef615ebd-6589-4720-a4b5-8e351729d436 c6b80ec36b3069e3064a56425728c20d {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor"} -C3N-03754.WGS.T.hg38 C3N-03754 PDA WGS tumor CPT0246810006 a331da11-10c0-4880-91bb-18dd3d89446d_wgs_gdc_realn.bam 201150105480 BAM harmonized CPTAC3 3343e5cb-6233-479b-afbb-e5006594e3fd b9e79f0114bf0f981a06bf3c1b94d6db {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor"} -C3N-03754.WXS.N C3N-03754 PDA WXS blood_normal CPT0246830002 CPT0246830002.WholeExome.RP-1303.bam 28358283591 BAM aligned CPTAC3 922f2b96-3f2d-43e4-9278-5385cc32b1af e28b9c3092a3e48c31c6846d41567619 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03754.WXS.N.hg38 C3N-03754 PDA WXS blood_normal CPT0246830002 0b6cef8c-b642-4576-bb89-8a8a534064b7_wxs_gdc_realn.bam 38781903520 BAM harmonized CPTAC3 6528bc4d-bfc6-4e68-b458-61d76d4cb21c 48cb2550e3efccc6bd73890898b21992 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03754.WXS.T C3N-03754 PDA WXS tumor CPT0246810006 CPT0246810006.WholeExome.RP-1303.bam 21638008112 BAM aligned CPTAC3 c8c29f0d-eec1-460f-911b-dbbf768613b3 5225f93557d028c73cce316ea4872e5e {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor"} -C3N-03754.WXS.T.hg38 C3N-03754 PDA WXS tumor CPT0246810006 a331da11-10c0-4880-91bb-18dd3d89446d_wxs_gdc_realn.bam 30131235874 BAM harmonized CPTAC3 bc374948-74d2-4b62-9b01-c7f0565c4646 2799403d6671323fac114926e546f02d {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor"} -C3N-03755.MethArray.Green.T C3N-03755 GBM Methylation_Array tumor CPT0248080006 204367490090_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6530c9a6-bc4e-4c26-b3dc-b489e051efcf 4d7dc9d9fb8acc70e7d1387a90474869 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor"} -C3N-03755.MethArray.Red.T C3N-03755 GBM Methylation_Array tumor CPT0248080006 204367490090_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 23877301-42b9-48b0-bd53-ac21f17fff1a 6c4d2209470cdb4c62797a7e93faed50 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor"} -C3N-03755.miRNA-Seq.S32_L002_R1.T C3N-03755 GBM miRNA-Seq tumor CPT0248080009 200403_UNC31-K00269_0274_AHCF7GBBXY_ACTTGA_S32_L002_R1_001.unaln.bam 205351927 BAM S32_L002_R1 unaligned CPTAC3 800060ad-d37e-49bd-82c9-99afe8462146 13ede4f16546d4b233b5f1a4e9d23d28 {"aliquot_tag": "ALQ_c838c4b3", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03755.miRNA-Seq.T.hg38 C3N-03755 GBM miRNA-Seq tumor CPT0248080009 05fdecb5-b154-4c51-be6a-4ab26d0ef0ac_mirnaseq_gdc_realn.bam 227839068 BAM harmonized CPTAC3 34fe4f31-bd59-4ee0-b450-71b440bb2c5f 64e124fe00583634e650afaf98f60848 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor"} -C3N-03755.RNA-Seq.chimeric.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.chimeric.gdc_realn.bam 178324940 BAM chimeric harmonized CPTAC3 8fc4dcc1-ea4b-4c6b-928d-37f903075a37 ab0e4caf99666ce2ed1de6dd54e75bb9 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor"} -C3N-03755.RNA-Seq.genomic.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.genomic.gdc_realn.bam 8051490711 BAM genomic harmonized CPTAC3 00a5fa0d-04ad-4c99-93ea-64804e60c5cf 8200d8863df85d4e686b03f1d3fdef75 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor"} -C3N-03755.RNA-Seq.S12_L008_R1.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R1_001.fastq.gz 3404251189 FASTQ S12_L008_R1 unaligned CPTAC3 b845241e-88cb-4f0c-9247-637536d1a2af 4facde3709a6078e7ace78543bf766d0 {"aliquot_tag": "ALQ_c838c4b3", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03755.RNA-Seq.S12_L008_R2.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ S12_L008_R2 unaligned CPTAC3 76548cbb-338c-4415-83dd-81b50d9ec658 c0a4204b5e54bd6c5c696decee768a27 {"aliquot_tag": "ALQ_c838c4b3", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03755.RNA-Seq.transcriptome.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.transcriptome.gdc_realn.bam 9191232631 BAM transcriptome harmonized CPTAC3 2de08e61-a2f8-4427-bd5c-b851083ee6e8 6add89307bc6b4846f1c80686a4664b9 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor"} -C3N-03755.WGS.N C3N-03755 GBM WGS blood_normal CPT0248100002 CPT0248100002.WholeGenome.RP-2158.bam 22211557499 BAM aligned CPTAC3 e29350af-b032-4737-bb26-93bc812e18e9 5605784aebae86d2ea2b381aa5600bb9 {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03755.WGS.N.hg38 C3N-03755 GBM WGS blood_normal CPT0248100002 50fce217-0cc7-4115-8100-8251b2e1dbe8_wgs_gdc_realn.bam 66609631094 BAM harmonized CPTAC3 dbdb5f5a-a6ce-4299-9a44-e0ea85c470a6 5883ee296ed86131d4af56ac4beb6232 {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03755.WGS.T C3N-03755 GBM WGS tumor CPT0248080006 CPT0248080006.WholeGenome.RP-2158.bam 25993185932 BAM aligned CPTAC3 5ab180dc-d608-4f96-8b61-02cda9280ef7 dbf71b95b8ec11bf91fa650e6676d544 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor"} -C3N-03755.WGS.T.hg38 C3N-03755 GBM WGS tumor CPT0248080006 b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wgs_gdc_realn.bam 75535747829 BAM harmonized CPTAC3 3441fcde-5a81-4c50-8ec0-24c4ec3bb284 3af63bce84bc920341c0874ae7b99659 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor"} -C3N-03755.WXS.N C3N-03755 GBM WXS blood_normal CPT0248100002 CPT0248100002.WholeExome.RP-1303.bam 23664884530 BAM aligned CPTAC3 b06fbb9f-2cc9-44af-b3ed-238b820450e9 4f9c1cac9736cbc3340cb9d6ef2b5c99 {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03755.WXS.N.hg38 C3N-03755 GBM WXS blood_normal CPT0248100002 50fce217-0cc7-4115-8100-8251b2e1dbe8_wxs_gdc_realn.bam 30506791502 BAM harmonized CPTAC3 46385935-1b35-415e-86f3-09448db274f3 a2d851d4809f3e45c535499da40a1ecd {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03755.WXS.T C3N-03755 GBM WXS tumor CPT0248080006 CPT0248080006.WholeExome.RP-1303.bam 17601322610 BAM aligned CPTAC3 52fa5352-c351-47f9-aa53-005005a6956f 41b0b33f9a69cd3b868fbf6bfb124f13 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor"} -C3N-03755.WXS.T.hg38 C3N-03755 GBM WXS tumor CPT0248080006 b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wxs_gdc_realn.bam 26137800668 BAM harmonized CPTAC3 c6a71dfb-c2ed-4488-a1ab-435ed2f4493f 123e927fa74ebb4b16c62d3190c41876 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor"} -C3N-03756.MethArray.Green.T C3N-03756 GBM Methylation_Array tumor CPT0248110006 204367460011_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6cb98e91-7c0d-4d2a-b29e-62de72afbc50 75f8b248f004bf8050090c1e67bed672 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor"} -C3N-03756.MethArray.Red.T C3N-03756 GBM Methylation_Array tumor CPT0248110006 204367460011_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 848db9be-9afd-4aa2-973b-76f9b61082cf 0e1c87ae1b048426f226420e0e475ef7 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor"} -C3N-03756.miRNA-Seq.S33_L002_R1.T C3N-03756 GBM miRNA-Seq tumor CPT0248110009 200403_UNC31-K00269_0274_AHCF7GBBXY_GATCAG_S33_L002_R1_001.unaln.bam 177102291 BAM S33_L002_R1 unaligned CPTAC3 410550af-6a72-4a8b-8ffc-d101ef5458ba 9320443e61b220f6b3f1afae72eeb3c9 {"aliquot_tag": "ALQ_e747567", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03756.miRNA-Seq.T.hg38 C3N-03756 GBM miRNA-Seq tumor CPT0248110009 2e4b0676-8a92-47e5-8e9a-8bef3b29fccd_mirnaseq_gdc_realn.bam 199862148 BAM harmonized CPTAC3 33bbf501-79d7-4b50-8df8-8c8ce30d0aca a1c120077ffdcf962a6027dbab7c535f {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor"} -C3N-03756.RNA-Seq.chimeric.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.chimeric.gdc_realn.bam 294029170 BAM chimeric harmonized CPTAC3 83aadae9-ad4c-4c4f-82e3-9e11f40c531c c58bb446631651895a43eb04d5c9996f {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor"} -C3N-03756.RNA-Seq.genomic.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.genomic.gdc_realn.bam 8993512795 BAM genomic harmonized CPTAC3 0496cb54-800a-494e-9876-3db71357579c 7cbba67516b08d0a0df734434a47b937 {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor"} -C3N-03756.RNA-Seq.S26_L003_R1.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ S26_L003_R1 unaligned CPTAC3 e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 35aa2d5983f4681549daf407deedb456 {"aliquot_tag": "ALQ_e747567", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03756.RNA-Seq.S26_L003_R2.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ S26_L003_R2 unaligned CPTAC3 d5a6f477-3888-416d-bbe8-c6110091e40e 7b582c55da00b403970b29128324978c {"aliquot_tag": "ALQ_e747567", "sample": "S26", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03756.RNA-Seq.transcriptome.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.transcriptome.gdc_realn.bam 8386071195 BAM transcriptome harmonized CPTAC3 1e308929-74c6-4f57-a6ba-f9d8b8be54d3 ff8160b88b5c62ee03a7e3420121d9a5 {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor"} -C3N-03756.WGS.N C3N-03756 GBM WGS blood_normal CPT0248150002 CPT0248150002.WholeGenome.RP-2158.bam 21131293979 BAM aligned CPTAC3 1cd96b5e-db11-4c2d-a9b2-d768a15a1cdb 4dc37405ba4c2e374fbc5269d2f20d53 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03756.WGS.N.hg38 C3N-03756 GBM WGS blood_normal CPT0248150002 66e454ec-e406-4636-ac39-6f866a915a54_wgs_gdc_realn.bam 62889344302 BAM harmonized CPTAC3 e7091cde-15c0-427a-ab8c-f4260501dd7d 8489814decfa6167c8954159f5e422f2 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03756.WGS.T C3N-03756 GBM WGS tumor CPT0248110006 CPT0248110006.WholeGenome.RP-2158.bam 26962179175 BAM aligned CPTAC3 3ef22001-f398-4ea5-8f12-ee2e72f00c6d 12b0cda91ea1307d25d984d8ee465db9 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor"} -C3N-03756.WGS.T.hg38 C3N-03756 GBM WGS tumor CPT0248110006 9ff900ed-184e-485a-a302-8547b3370e49_wgs_gdc_realn.bam 79817657270 BAM harmonized CPTAC3 2312a271-58c8-4e5f-a6eb-702e901ea6fc ba8acc4e7d09f0da180e0d5a02c3e0c7 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor"} -C3N-03756.WXS.N C3N-03756 GBM WXS blood_normal CPT0248150002 CPT0248150002.WholeExome.RP-1303.bam 19049399344 BAM aligned CPTAC3 e20215d6-865c-4277-b5e9-c5cbcbc9fbd7 74e9bec673308192b1626205176eeb43 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03756.WXS.N.hg38 C3N-03756 GBM WXS blood_normal CPT0248150002 66e454ec-e406-4636-ac39-6f866a915a54_wxs_gdc_realn.bam 24900533593 BAM harmonized CPTAC3 55625e73-b970-4eed-a670-24a1338b7427 727db86d9dd15cd9744edff72c212a84 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal"} -C3N-03756.WXS.T C3N-03756 GBM WXS tumor CPT0248110006 CPT0248110006.WholeExome.RP-1303.bam 22753080992 BAM aligned CPTAC3 49daf6bc-00a0-493f-af83-b36bae5c0390 5765a6a995b4f8e4862e89949658047a {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor"} -C3N-03756.WXS.T.hg38 C3N-03756 GBM WXS tumor CPT0248110006 9ff900ed-184e-485a-a302-8547b3370e49_wxs_gdc_realn.bam 31383324403 BAM harmonized CPTAC3 19d498ba-9032-44d3-bf45-786ac215e4e1 64cdd705124a259c838a8922784967c0 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor"} -C3N-03757.MethArray.Green.T C3N-03757 GBM Methylation_Array tumor CPT0248040006 204367470127_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 df652ab7-6975-4599-99ab-5939111f7247 dd5c4ab424e6f96991b80ce6b9ac0745 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor"} -C3N-03757.MethArray.Red.T C3N-03757 GBM Methylation_Array tumor CPT0248040006 204367470127_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 221b8a7f-9dd8-4267-9507-71f710d09832 68ad245cdeb70a1eb4ca4e33434fd503 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor"} -C3N-03757.miRNA-Seq.S31_L002_R1.T C3N-03757 GBM miRNA-Seq tumor CPT0248040009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAGATC_S31_L002_R1_001.unaln.bam 223881370 BAM S31_L002_R1 unaligned CPTAC3 0e40ba4c-ff44-476b-90d5-1b994bcb16be 174e2b21c1b0a33102b94fa231f9297e {"aliquot_tag": "ALQ_dc829b2", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03757.miRNA-Seq.T.hg38 C3N-03757 GBM miRNA-Seq tumor CPT0248040009 cd63d63e-0b6e-4e86-96bc-f5168390c5e4_mirnaseq_gdc_realn.bam 248543913 BAM harmonized CPTAC3 5eaa3845-65e0-4267-a04f-2514b3166463 2b51fae08dba9ac803337fb0c8ef4c0f {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor"} -C3N-03757.RNA-Seq.chimeric.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.chimeric.gdc_realn.bam 200720575 BAM chimeric harmonized CPTAC3 59b5f03d-128e-4ec7-b677-b113888faef9 eb3edec934b324159884ea1821df1072 {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor"} -C3N-03757.RNA-Seq.genomic.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.genomic.gdc_realn.bam 12106412003 BAM genomic harmonized CPTAC3 4788415e-9a6a-4ea2-b7c3-5d6d312fbbbd 3205972a5acf5eb62f55d1fd75edfecb {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor"} -C3N-03757.RNA-Seq.S59_L006_R1.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ S59_L006_R1 unaligned CPTAC3 4a00f13f-802b-479a-9c10-208b3158248a 8e10728c639d1fad5884770ad5fb33d9 {"aliquot_tag": "ALQ_dc829b2", "sample": "S59", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03757.RNA-Seq.S59_L006_R2.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ S59_L006_R2 unaligned CPTAC3 973c3d9c-0686-4288-a83d-725e7d2d0488 d9c65c130c0f72548cbd93bf5f9c029d {"aliquot_tag": "ALQ_dc829b2", "sample": "S59", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03757.RNA-Seq.transcriptome.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.transcriptome.gdc_realn.bam 14832133507 BAM transcriptome harmonized CPTAC3 50dbacaa-8163-4763-b133-a0140858adb0 f9d82da8d306880adba851c9d783e5f1 {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor"} -C3N-03757.WGS.N C3N-03757 GBM WGS blood_normal CPT0248070002 CPT0248070002.WholeGenome.RP-2158.bam 24748606890 BAM aligned CPTAC3 bcc3251e-5b36-4ca6-bac9-212dd4dd5d9a 2a0748c11f3db41deb1d479a6f903e0f {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal"} -C3N-03757.WGS.N.hg38 C3N-03757 GBM WGS blood_normal CPT0248070002 8d894511-5d1c-4e1d-9276-2652042bb730_wgs_gdc_realn.bam 74844179183 BAM harmonized CPTAC3 8bbe506e-60c3-4df6-af3d-f7713d49b0dc 57f11f8c6528f5b1bdfc812ee89bb361 {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal"} -C3N-03757.WGS.T C3N-03757 GBM WGS tumor CPT0248040006 CPT0248040006.WholeGenome.RP-2158.bam 21315382528 BAM aligned CPTAC3 412452bc-414e-4ffc-aa7b-af95b5e0dabc 70eb73fe2a7599529b2ec7bdb9434d27 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor"} -C3N-03757.WGS.T.hg38 C3N-03757 GBM WGS tumor CPT0248040006 fa002608-faaf-4aa1-8594-0146105e9048_wgs_gdc_realn.bam 63162009480 BAM harmonized CPTAC3 b5398b66-5b43-4f83-a30a-21db3a30b5e9 926fc0fce287690bebb786bf88a15837 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor"} -C3N-03757.WXS.N C3N-03757 GBM WXS blood_normal CPT0248070002 CPT0248070002.WholeExome.RP-1303.bam 22962780889 BAM aligned CPTAC3 d167d275-86d1-4c8a-bee2-8b8adea4945f c90589826cdb855ea9258db5609f43dd {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal"} -C3N-03757.WXS.N.hg38 C3N-03757 GBM WXS blood_normal CPT0248070002 8d894511-5d1c-4e1d-9276-2652042bb730_wxs_gdc_realn.bam 31169625067 BAM harmonized CPTAC3 bc78ea1b-1673-4776-a7b8-93d09d7234dd f1472414f640cc7d7e8b32ae0ea69384 {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal"} -C3N-03757.WXS.T C3N-03757 GBM WXS tumor CPT0248040006 CPT0248040006.WholeExome.RP-1303.bam 21692557413 BAM aligned CPTAC3 fb48e7ec-37d9-4788-94c2-eb9a5adbc31a 881fb57ba5ddb5ce3060ea5dbe527ca8 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor"} -C3N-03757.WXS.T.hg38 C3N-03757 GBM WXS tumor CPT0248040006 fa002608-faaf-4aa1-8594-0146105e9048_wxs_gdc_realn.bam 29973231524 BAM harmonized CPTAC3 21121304-f000-449a-b9b4-898035459432 e86e1da33c454c33a96ceed58612bd90 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor"} -C3N-03762.MethArray.Green.A C3N-03762 LSCC Methylation_Array tissue_normal CPT0247250006 204367490057_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 45ab3c1a-6a7a-4b64-9cde-9392b724af6c c4deb8659786f96f1619a16587babef5 {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.MethArray.Green.T C3N-03762 LSCC Methylation_Array tumor CPT0247240006 204367470131_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f7ed7e70-e523-4d98-9404-31052ef8e149 5abe03f9d08b3cdab5a0842cdc92c28b {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor"} -C3N-03762.MethArray.Red.A C3N-03762 LSCC Methylation_Array tissue_normal CPT0247250006 204367490057_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 e201fa33-12fb-4062-bdde-778144668082 93bfc45f6a1aa4d35e9738c82f9b9f83 {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.MethArray.Red.T C3N-03762 LSCC Methylation_Array tumor CPT0247240006 204367470131_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 939af771-835e-4e78-8b65-ae7bf1bbc944 7f650951ba51f817c3b0e18c45b46196 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor"} -C3N-03762.miRNA-Seq.A.hg38 C3N-03762 LSCC miRNA-Seq tissue_normal CPT0247250009 9cb853a3-c3af-46cb-bcf1-84962b366419_mirnaseq_gdc_realn.bam 357051636 BAM harmonized CPTAC3 5cb067e1-3d7f-47a6-b5d3-ac4444c83c40 6bb9abe7d6dd9ce932dce129c0495377 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.miRNA-Seq.S5_L008_R1.T C3N-03762 LSCC miRNA-Seq tumor CPT0247240009 200224_UNC31-K00269_0267_AHC722BBXY_ACAGTG_S5_L008_R1_001.unaln.bam 256720337 BAM S5_L008_R1 unaligned CPTAC3 f5b5c460-b34c-4c0d-8783-ccf4e3ad6bba 33f7a6d0752596f921d1ee6553453748 {"aliquot_tag": "ALQ_b648f850", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03762.miRNA-Seq.S7_L001_R1.A C3N-03762 LSCC miRNA-Seq tissue_normal CPT0247250009 200325_UNC31-K00269_0272_AHHC2NBBXY_CACGAT_S7_L001_R1_001.unaln.bam 329110114 BAM S7_L001_R1 unaligned CPTAC3 980b4850-bd6b-4085-8d83-ad08a467a759 0d8a55a61ecd29dd383a5c8f04a6338e {"aliquot_tag": "ALQ_8b28d1e0", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.miRNA-Seq.T.hg38 C3N-03762 LSCC miRNA-Seq tumor CPT0247240009 851089c1-577f-446d-83fd-df501d1f89d7_mirnaseq_gdc_realn.bam 283692596 BAM harmonized CPTAC3 d7c7db8d-2148-41ea-a277-d45cebb56298 6df4c42f38ce1568826171d81b721c43 {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor"} -C3N-03762.RNA-Seq.chimeric.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.chimeric.gdc_realn.bam 88593336 BAM chimeric harmonized CPTAC3 3ffa01bd-d800-4ece-9384-973d5a0afa65 05e63cda5a0b63ab52c53afc00145a67 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.RNA-Seq.chimeric.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.chimeric.gdc_realn.bam 28277960 BAM chimeric harmonized CPTAC3 c75e6109-652e-40e7-89eb-eb21748c40d0 2bed1aa72de457c8fb421e4edd4e2f20 {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor"} -C3N-03762.RNA-Seq.genomic.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.genomic.gdc_realn.bam 8311813636 BAM genomic harmonized CPTAC3 860bf7af-4d99-465d-ad25-d25d50fcb432 51cbe81ca65c38409e2b5dfc7b6c58b5 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.RNA-Seq.genomic.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.genomic.gdc_realn.bam 6867389783 BAM genomic harmonized CPTAC3 fb08abb0-0ef7-4d7e-92f4-60ca768872f6 86dd1037de530e73b2c1f58ed2ba67dd {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor"} -C3N-03762.RNA-Seq.S15_L004_R1.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R1_001.fastq.gz 4073473721 FASTQ S15_L004_R1 unaligned CPTAC3 2d8aace6-dfbe-405a-a72d-0e7aad158a73 9e91b5ca4abf9c34a9df1216eb622ae4 {"aliquot_tag": "ALQ_8b28d1e0", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.RNA-Seq.S15_L004_R2.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R2_001.fastq.gz 4341685544 FASTQ S15_L004_R2 unaligned CPTAC3 1c6eaab0-e5b4-43e4-92c0-cc63d9ea92e8 e548606f23b2c83bbff8e1177d6d3682 {"aliquot_tag": "ALQ_8b28d1e0", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.RNA-Seq.S5_L002_R1.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3340458440 FASTQ S5_L002_R1 unaligned CPTAC3 eedce802-aab1-49aa-9611-c3a4f3b214b7 51b51b9bf5e15ece7db6b66efaf4c99b {"aliquot_tag": "ALQ_b648f850", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03762.RNA-Seq.S5_L002_R2.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 3596102940 FASTQ S5_L002_R2 unaligned CPTAC3 60ece175-202c-4e59-bab5-3acbc69cc22d 3bb00cef5a52ef615aadcee48ed97303 {"aliquot_tag": "ALQ_b648f850", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03762.RNA-Seq.transcriptome.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.transcriptome.gdc_realn.bam 11281568734 BAM transcriptome harmonized CPTAC3 c6ba9e81-6cd7-4a9f-89fb-da13b5c5e69f dad417b4f0dd81123ce5c1849d243eb3 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.RNA-Seq.transcriptome.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.transcriptome.gdc_realn.bam 9651716509 BAM transcriptome harmonized CPTAC3 6ca8a5c1-16ed-42f2-9f5b-e846b2c67df2 77421ca846fad762d2c3f763c22e6bbb {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor"} -C3N-03762.WGS.N C3N-03762 LSCC WGS blood_normal CPT0247280008 CPT0247280008.WholeGenome.RP-2158.bam 24860619632 BAM aligned CPTAC3 85fcd93a-688b-402c-8e14-9217d80e090a 217703e1535fa4de4337728271e998c8 {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03762.WGS.N.hg38 C3N-03762 LSCC WGS blood_normal CPT0247280008 f8c7c04c-bf1e-4a8c-9d49-d43de0279a39_wgs_gdc_realn.bam 75682384584 BAM harmonized CPTAC3 83a064b6-a934-408d-93ee-ab41545c75c5 77b00fa54e38d16c99d2d5609a8c5952 {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03762.WGS.T C3N-03762 LSCC WGS tumor CPT0247240006 CPT0247240006.WholeGenome.RP-2158.bam 22764221099 BAM aligned CPTAC3 32fd25df-344a-464d-8c7c-0bafe85055ec 0257f8fa5c697a3bec7e5f7a907328e4 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor"} -C3N-03762.WGS.T.hg38 C3N-03762 LSCC WGS tumor CPT0247240006 a5fe587b-8a3a-411a-99cd-d07dbade113f_wgs_gdc_realn.bam 68324474453 BAM harmonized CPTAC3 959ede3b-d2ab-4799-ad2f-e1e146acf67b aa7c2e61ae2b5a3402102e2efb068ba4 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor"} -C3N-03762.WXS.A C3N-03762 LSCC WXS tissue_normal CPT0247250006 CPT0247250006.WholeExome.RP-1303.bam 24695291830 BAM aligned CPTAC3 b0b166af-f23e-4c08-8725-f9e85e744246 5f702ddc32f11f844735bf54e7b9186e {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.WXS.A.hg38 C3N-03762 LSCC WXS tissue_normal CPT0247250006 0a858089-058f-4884-9d00-c48aceb13e37_wxs_gdc_realn.bam 33415340923 BAM harmonized CPTAC3 7970a8e9-5f75-4cd8-b531-c9ff01875906 d717520661b551ee52cb4c7cde5ce26a {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03762.WXS.N C3N-03762 LSCC WXS blood_normal CPT0247280008 CPT0247280008.WholeExome.RP-1303.bam 22781704561 BAM aligned CPTAC3 0ca29e67-33ac-47d4-a069-39a19e0409e0 ba1c1b2eaecacbd4bf0586fbdbbaf67c {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03762.WXS.N.hg38 C3N-03762 LSCC WXS blood_normal CPT0247280008 f8c7c04c-bf1e-4a8c-9d49-d43de0279a39_wxs_gdc_realn.bam 30722675897 BAM harmonized CPTAC3 4c2c3705-fbf8-4cf7-a018-9cf4ad4b56a8 9cc18633b8b7ed3e1a294f5884063f55 {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03762.WXS.T C3N-03762 LSCC WXS tumor CPT0247240006 CPT0247240006.WholeExome.RP-1303.bam 23013134639 BAM aligned CPTAC3 2ceb8166-fcd6-4f52-83a4-c5cdc2ad49fb a0802332dcb471d68f074d60069e5312 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor"} -C3N-03762.WXS.T.hg38 C3N-03762 LSCC WXS tumor CPT0247240006 a5fe587b-8a3a-411a-99cd-d07dbade113f_wxs_gdc_realn.bam 31910219948 BAM harmonized CPTAC3 c340017f-e45f-45f8-88aa-5cf74bd8485a 3675eababba9e43fc93939f0d1956cfa {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor"} -C3N-03764.MethArray.Green.A C3N-03764 LUAD Methylation_Array tissue_normal CPT0246040006 203561620095_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f5b71248-df6d-4e9a-b9e4-c3a03b0dad93 d2489fd98b9276c1e018d46d1ba0a247 {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.MethArray.Green.T C3N-03764 LUAD Methylation_Array tumor CPT0246030006 203561450103_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 91558040-753b-47dd-92b5-985992e1547d a60ed2287210ad5d9f0dc00af803ce31 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor"} -C3N-03764.MethArray.Red.A C3N-03764 LUAD Methylation_Array tissue_normal CPT0246040006 203561620095_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 42450cab-48d9-4782-88c1-e3c8277c4a1a 0e927c4490f6d2821a2d9a1be5dd0a38 {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.MethArray.Red.T C3N-03764 LUAD Methylation_Array tumor CPT0246030006 203561450103_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5092a8c9-f0e1-4126-868f-1f48890b7005 214fbd1946098dcf731da3127dbda8e7 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor"} -C3N-03764.miRNA-Seq.A.hg38 C3N-03764 LUAD miRNA-Seq tissue_normal CPT0246040009 1bde88c1-2ed0-4142-be07-0ba40d2948a0_mirnaseq_gdc_realn.bam 254516986 BAM harmonized CPTAC3 05779cdd-24fb-4287-89b5-7b18873fb688 839bbedc677823dd8017daff8cae77a0 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.miRNA-Seq.S146_L007_R1.T C3N-03764 LUAD miRNA-Seq tumor CPT0246030009 190828_UNC32-K00270_0200_BH7GVJBBXY_TCATTC_S146_L007_R1_001.unaln.bam 180554577 BAM S146_L007_R1 unaligned CPTAC3 296ffecd-04d0-4c8f-bd1f-4c001ed1e90c 8bd5ebc2a275f989a777713528f705e3 {"aliquot_tag": "ALQ_efd78eff", "sample": "S146", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03764.miRNA-Seq.S43_L007_R1.A C3N-03764 LUAD miRNA-Seq tissue_normal CPT0246040009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGGCC_S43_L007_R1_001.unaln.bam 216989357 BAM S43_L007_R1 unaligned CPTAC3 fe2f153f-b22d-4ace-bd0d-5d92d0a1e9c3 11e1c1b9e162324506a6135fa496fb78 {"aliquot_tag": "ALQ_5df752ef", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.miRNA-Seq.T.hg38 C3N-03764 LUAD miRNA-Seq tumor CPT0246030009 0e59d975-0e9f-4064-9998-859c218462c3_mirnaseq_gdc_realn.bam 199331989 BAM harmonized CPTAC3 8cb50e62-8920-4b1a-9b7c-e1e25d2d8768 9cf26072ad97851d3ade8e70abce9ffa {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor"} -C3N-03764.RNA-Seq.chimeric.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.chimeric.gdc_realn.bam 36114609 BAM chimeric harmonized CPTAC3 2e178b91-f4a6-4154-bbdd-401259553bd5 67d59bc88c93ec2d8dd21bf228c8c3d5 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.RNA-Seq.chimeric.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.chimeric.gdc_realn.bam 20885227 BAM chimeric harmonized CPTAC3 6cc40666-fdae-48bc-86f5-594bbf62b14e 82ae87dfc0366babc6dd215a604c75b7 {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor"} -C3N-03764.RNA-Seq.genomic.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.genomic.gdc_realn.bam 7782960355 BAM genomic harmonized CPTAC3 ea8d5406-accd-4287-8184-4753af827d9a c93e7ef86a038f46eec1747765513594 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.RNA-Seq.genomic.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.genomic.gdc_realn.bam 12644170522 BAM genomic harmonized CPTAC3 66f18147-198d-4a60-9114-7ff9ba7cd75d ba7dd51975fe6faaa65fe00874433146 {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor"} -C3N-03764.RNA-Seq.S10_L003_R1.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R1_001.fastq.gz 3318022252 FASTQ S10_L003_R1 unaligned CPTAC3 91751b20-d366-4f86-b744-0d697d0a38db 78f822294c5fc4973c8385dd4efda317 {"aliquot_tag": "ALQ_efd78eff", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03764.RNA-Seq.S10_L003_R2.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R2_001.fastq.gz 3789747377 FASTQ S10_L003_R2 unaligned CPTAC3 19321d88-2e65-4487-8543-35536d48bd3b c7717afba1122648fe40402fd8112d64 {"aliquot_tag": "ALQ_efd78eff", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03764.RNA-Seq.S3_L001_R1.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3030574716 FASTQ S3_L001_R1 unaligned CPTAC3 746c6586-5eee-4009-9f7b-ad0ecbc3d7e1 cef42e7ab7bd0b473aaf6ca58bbe0d12 {"aliquot_tag": "ALQ_5df752ef", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.RNA-Seq.S3_L001_R2.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 3628983578 FASTQ S3_L001_R2 unaligned CPTAC3 eb8206f8-4a64-4e92-96b2-820c0be176f9 25eab66c63138702d6710b163ef1e5ab {"aliquot_tag": "ALQ_5df752ef", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.RNA-Seq.transcriptome.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.transcriptome.gdc_realn.bam 7987634173 BAM transcriptome harmonized CPTAC3 f92e8034-d631-4c43-975a-8b9f453b7bb3 a4ada6f555b1d55d8a7f06b64d1d7323 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.RNA-Seq.transcriptome.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.transcriptome.gdc_realn.bam 8483973742 BAM transcriptome harmonized CPTAC3 afebc08a-3853-4d6f-837d-61b8887aa59d e5dc25f3d01559c3f630b61889a7ea06 {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor"} -C3N-03764.WGS.N C3N-03764 LUAD WGS blood_normal CPT0246070002 CPT0246070002.WholeGenome.RP-1303.bam 68558131283 BAM aligned CPTAC3 353bfd86-90f5-48af-b4eb-c1b0debc2bef 5be56079b734c4522884d1c627bfc4d2 {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03764.WGS.N.hg38 C3N-03764 LUAD WGS blood_normal CPT0246070002 6fd426f8-0858-4065-98e6-df2c1651774b_wgs_gdc_realn.bam 99778126754 BAM harmonized CPTAC3 4334fe61-4e0f-46bb-81ed-f1bf83fba41b 410dc04a6cfbcff38a5a1a400fe9d2ff {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03764.WGS.T C3N-03764 LUAD WGS tumor CPT0246030006 CPT0246030006.WholeGenome.RP-1303.bam 76288762672 BAM aligned CPTAC3 896b718b-9b15-43c7-9caa-ba83e4256a1e bd0195a8457f26d30642079007908059 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor"} -C3N-03764.WGS.T.hg38 C3N-03764 LUAD WGS tumor CPT0246030006 66d4a838-4adc-4374-9422-a19d26ead31b_wgs_gdc_realn.bam 114646116482 BAM harmonized CPTAC3 957b7c6c-7ef6-4fae-bbf5-785a98e6ad0e 6c903cbdc68661a78f82561112cb9a16 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor"} -C3N-03764.WXS.A C3N-03764 LUAD WXS tissue_normal CPT0246040006 CPT0246040006.WholeExome.RP-1303.bam 27117190741 BAM aligned CPTAC3 bc87761c-cce5-4367-ac3f-65a3074b7f8f 7f1d1ff881df16e797fa0b3b8f600fbd {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.WXS.A.hg38 C3N-03764 LUAD WXS tissue_normal CPT0246040006 8a8d6b5d-f3bb-4b4c-aca2-c599b67b6fe8_wxs_gdc_realn.bam 37627749886 BAM harmonized CPTAC3 5a59945a-46e1-4a7c-b628-621b0e56093e 69b9b5dac77b64b9bdc251c7edcc3680 {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03764.WXS.N C3N-03764 LUAD WXS blood_normal CPT0246070002 CPT0246070002.WholeExome.RP-1303.bam 33266984565 BAM aligned CPTAC3 c687e16f-c7b8-4114-be30-fba53984fc89 689b3c7c59e995182e81581985f13e65 {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03764.WXS.N.hg38 C3N-03764 LUAD WXS blood_normal CPT0246070002 6fd426f8-0858-4065-98e6-df2c1651774b_wxs_gdc_realn.bam 45938957309 BAM harmonized CPTAC3 4fa6d887-632a-4f1c-9762-52785e4cd303 56c749ee41162ae87bf5821c59a5ba5f {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03764.WXS.T C3N-03764 LUAD WXS tumor CPT0246030006 CPT0246030006.WholeExome.RP-1303.bam 25026190975 BAM aligned CPTAC3 b6c220ca-2c63-4389-9359-0abc33559afa c89dfe2b0c6dfbbe6a1297491ef6fa93 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor"} -C3N-03764.WXS.T.hg38 C3N-03764 LUAD WXS tumor CPT0246030006 66d4a838-4adc-4374-9422-a19d26ead31b_wxs_gdc_realn.bam 34291962151 BAM harmonized CPTAC3 9591a9e1-b863-4ffc-84e9-77668d2b7179 b1b44e53089863af0f4fe26d63c8ad9c {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor"} -C3N-03765.MethArray.Green.A C3N-03765 LUAD Methylation_Array tissue_normal CPT0247200006 203561620049_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3973bd79-96d7-4a91-99e1-be68b8d91e04 72974957dc46a5b3c7c124522bf26e86 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.MethArray.Green.T C3N-03765 LUAD Methylation_Array tumor CPT0247190006 203561620085_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 068dee9b-a368-4217-9e66-f0a2d475ee24 bcf30027919929a3cbe291e82ecea67a {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor"} -C3N-03765.MethArray.Red.A C3N-03765 LUAD Methylation_Array tissue_normal CPT0247200006 203561620049_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 cb811be7-3349-46ad-9a68-87fc4222ef4a ea93aeb575446667b31b6a9b22598758 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.MethArray.Red.T C3N-03765 LUAD Methylation_Array tumor CPT0247190006 203561620085_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 99464054-130f-4d7a-88d1-44b5a78dff22 c3a6e49324aa9428eb54b7aea07ff696 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor"} -C3N-03765.miRNA-Seq.A.hg38 C3N-03765 LUAD miRNA-Seq tissue_normal CPT0247200009 31113c3f-ff40-42e8-863e-b75dfb0c7ff3_mirnaseq_gdc_realn.bam 277765805 BAM harmonized CPTAC3 aa6a030d-3073-42f2-9d10-cdc63d81fdb7 08fff1d000d4969213a9bf999eaf2992 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.miRNA-Seq.S35_L004_R1.T C3N-03765 LUAD miRNA-Seq tumor CPT0247190009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAATCG_S35_L004_R1_001.unaln.bam 203104741 BAM S35_L004_R1 unaligned CPTAC3 fb75cd8b-09b3-49c2-a2f1-c558725b4196 243fa191ad56a5c5d469c14a45724b11 {"aliquot_tag": "ALQ_c84c4e4f", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03765.miRNA-Seq.S3_L005_R1.A C3N-03765 LUAD miRNA-Seq tissue_normal CPT0247200009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGATC_S3_L005_R1_001.unaln.bam 247343253 BAM S3_L005_R1 unaligned CPTAC3 9b16f11b-40b3-47c3-896f-ed90af9d27c7 97cd726af9bc2c169ef546bb85e4df24 {"aliquot_tag": "ALQ_43c85e90", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.miRNA-Seq.T.hg38 C3N-03765 LUAD miRNA-Seq tumor CPT0247190009 db7a6af3-754c-4a99-ae31-c1d13bbe08c1_mirnaseq_gdc_realn.bam 222978776 BAM harmonized CPTAC3 a09bf700-1bc0-4f72-b404-3bb964f1ba93 36167127b4856da2192f7eca32c73447 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor"} -C3N-03765.RNA-Seq.chimeric.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.chimeric.gdc_realn.bam 40729552 BAM chimeric harmonized CPTAC3 32c980df-1563-4664-a501-15d42695fc75 423174ad2cb97a4bb65c163a067346d4 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.RNA-Seq.chimeric.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.chimeric.gdc_realn.bam 28558648 BAM chimeric harmonized CPTAC3 b5a4a810-67fe-4bd5-861c-dd0df1988032 8ba573f7ec86ffbfc6e77724f0644f02 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor"} -C3N-03765.RNA-Seq.genomic.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.genomic.gdc_realn.bam 12297778340 BAM genomic harmonized CPTAC3 e210e3ad-a591-41f9-8190-3d1b92c8b829 c34dfdad6ee787128aa8f243eadb2da7 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.RNA-Seq.genomic.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.genomic.gdc_realn.bam 13400865327 BAM genomic harmonized CPTAC3 f77f13f3-54b7-453e-86b3-a300faec4435 8068c2b064f573315df84502f12fd421 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor"} -C3N-03765.RNA-Seq.S14_L004_R1.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R1_001.fastq.gz 4116993420 FASTQ S14_L004_R1 unaligned CPTAC3 295cd9a0-a958-4712-8537-cf9f29c46657 68c525fa29464225015e5be8b6896649 {"aliquot_tag": "ALQ_c84c4e4f", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03765.RNA-Seq.S14_L004_R2.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R2_001.fastq.gz 4693410122 FASTQ S14_L004_R2 unaligned CPTAC3 7d1a1e74-f916-4eaf-9f92-63f2052bf10f 914cc51b3ceea15a2b29f9ea446ee24e {"aliquot_tag": "ALQ_c84c4e4f", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03765.RNA-Seq.S17_L005_R1.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R1_001.fastq.gz 4020199598 FASTQ S17_L005_R1 unaligned CPTAC3 9ffe5ebe-6755-4cce-a8a3-f78a8dfe4a60 aa2808dec856d34059b074c7b7708388 {"aliquot_tag": "ALQ_43c85e90", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.RNA-Seq.S17_L005_R2.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R2_001.fastq.gz 4493721084 FASTQ S17_L005_R2 unaligned CPTAC3 9a4769fa-9da5-4b48-8bae-cd3c3ae4a321 f9d7c3ddf6711d825165d13454f74147 {"aliquot_tag": "ALQ_43c85e90", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.RNA-Seq.transcriptome.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.transcriptome.gdc_realn.bam 8933045027 BAM transcriptome harmonized CPTAC3 fc46fa86-8ceb-4004-aa7e-13b7ba3cf5f8 619ecfb8c4de52267855a90621df35b0 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.RNA-Seq.transcriptome.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.transcriptome.gdc_realn.bam 9973484739 BAM transcriptome harmonized CPTAC3 b16fa310-58f0-4090-b61e-d067944f654b 06699d5cbb74eb4e0395b608b23399f6 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor"} -C3N-03765.WGS.N C3N-03765 LUAD WGS blood_normal CPT0247230002 CPT0247230002.WholeGenome.RP-1303.bam 69883287120 BAM aligned CPTAC3 9ddae3ef-7094-4eef-a077-b65f39b90efb 82deb10b7a7c9b379561986f0f06bb87 {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03765.WGS.N.hg38 C3N-03765 LUAD WGS blood_normal CPT0247230002 34da4eaa-aea2-4b64-b944-99f5f726926e_wgs_gdc_realn.bam 101718894326 BAM harmonized CPTAC3 5fe7f154-ec05-4c4d-ac14-6305dcf27d4e 8892befbfe315f30869e070518ec577f {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03765.WGS.T C3N-03765 LUAD WGS tumor CPT0247190006 CPT0247190006.WholeGenome.RP-1303.bam 62203165112 BAM aligned CPTAC3 2bfcd397-dd79-423f-bde9-fd38ed90d106 f4cdfa82a770295b56259b6b6fa53b9b {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor"} -C3N-03765.WGS.T.hg38 C3N-03765 LUAD WGS tumor CPT0247190006 0c0db7ea-9c14-4f39-b060-627ac82834df_wgs_gdc_realn.bam 90633397157 BAM harmonized CPTAC3 b7d9a101-6965-4441-89c5-95b91494d175 fb9478edad98c0ef081b8449025d3d92 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor"} -C3N-03765.WXS.A C3N-03765 LUAD WXS tissue_normal CPT0247200006 CPT0247200006.WholeExome.RP-1303.bam 20740648145 BAM aligned CPTAC3 03d99d94-87ed-4ad9-a8cc-3374ebd0c0a7 e04281a6691c564695a7483bffe58073 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.WXS.A.hg38 C3N-03765 LUAD WXS tissue_normal CPT0247200006 fe3bcdf6-d768-4d1c-bf7f-1a05ee6fca0f_wxs_gdc_realn.bam 28935157062 BAM harmonized CPTAC3 e79d506e-3604-4468-ae1e-285da665f359 2e39633c3f65ee28dfe132806720dfd4 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03765.WXS.N C3N-03765 LUAD WXS blood_normal CPT0247230002 CPT0247230002.WholeExome.RP-1303.bam 30324163910 BAM aligned CPTAC3 ef7a32f4-0903-46de-967e-f8e68d47c883 7593b30b0cddf39be3b5f7271b9c7d71 {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03765.WXS.N.hg38 C3N-03765 LUAD WXS blood_normal CPT0247230002 34da4eaa-aea2-4b64-b944-99f5f726926e_wxs_gdc_realn.bam 41953162172 BAM harmonized CPTAC3 3685a804-d037-4f73-a373-1e3d88966c3b ac4a7b22472984337a0179d9f9e58b5f {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03765.WXS.T C3N-03765 LUAD WXS tumor CPT0247190006 CPT0247190006.WholeExome.RP-1303.bam 29885259416 BAM aligned CPTAC3 0f673011-de27-4ec0-989e-48936458edc8 56a5269d70a5dfc279ad055185ad2ca1 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor"} -C3N-03765.WXS.T.hg38 C3N-03765 LUAD WXS tumor CPT0247190006 0c0db7ea-9c14-4f39-b060-627ac82834df_wxs_gdc_realn.bam 41335772700 BAM harmonized CPTAC3 d4433296-1a9c-4d8e-bef9-c43fcaf31a03 1a4844cba8b067e1d82fc2359409e946 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor"} -C3N-03767.MethArray.Green.T C3N-03767 UCEC Methylation_Array tumor CPT0247970006 203561620077_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0dc4873e-39b5-4501-ba69-9aac288f3973 88f9a151d62efe0ecb35dd68d553ceed {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor"} -C3N-03767.MethArray.Red.T C3N-03767 UCEC Methylation_Array tumor CPT0247970006 203561620077_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 b554dcaa-e494-496d-a188-e21bbdddfbcd c7f95b5433df6f10de299c71080a104e {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor"} -C3N-03767.miRNA-Seq.S8_L001_R1.T C3N-03767 UCEC miRNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L001_R1_001.unaln.bam 238996539 BAM S8_L001_R1 unaligned CPTAC3 d11de997-e34f-496b-9297-91f04e56df92 515501920160ad98cda1094f22f5a75d {"aliquot_tag": "ALQ_9b2f7243", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03767.miRNA-Seq.T.hg38 C3N-03767 UCEC miRNA-Seq tumor CPT0247970009 f49402bc-efc2-49ab-9925-9b4b1decabb7_mirnaseq_gdc_realn.bam 265433972 BAM harmonized CPTAC3 d6892e25-142a-4d11-aa54-85da8e05cbdb 892a0e75384a95593fbf0d30242aeb27 {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.chimeric.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.chimeric.gdc_realn.bam 34760137 BAM chimeric harmonized CPTAC3 02e98a26-ffbe-424a-a438-1caec7898e37 033cd094f2b6969d1df7ce780c3e7420 {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.chimeric.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.chimeric.gdc_realn.bam 89186223 BAM chimeric harmonized CPTAC3 571344aa-7eec-4a9c-9f1f-5d5651871e60 f38d97d71df87e9dec932fc30be890f6 {"aliquot_tag": "ALQ_21beaa4c", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.genomic.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.genomic.gdc_realn.bam 8121193570 BAM genomic harmonized CPTAC3 d0fda6fc-2ab2-4268-ab69-1ad263bcedfc 92b0ef32c6e9ad8cc1b9ff7b4fecc095 {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.genomic.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.genomic.gdc_realn.bam 7124132949 BAM genomic harmonized CPTAC3 f1f0da13-4fa5-4040-bc7e-71c48d471498 c629b595d4d02ec1f37fbd577af136f5 {"aliquot_tag": "ALQ_21beaa4c", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.S17_L005_R1.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R1_001.fastq.gz 4133180720 FASTQ S17_L005_R1 unaligned CPTAC3 c908803c-3935-4016-950c-87170439cf92 9f2383e26805c3de59eb2e70dcaa7f6a {"aliquot_tag": "ALQ_9b2f7243", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.S17_L005_R2.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R2_001.fastq.gz 4499270582 FASTQ S17_L005_R2 unaligned CPTAC3 3e24a777-67f7-4371-bf56-f5ab2a8dc9b2 53f732c5495839b5b9966feab3f1f401 {"aliquot_tag": "ALQ_9b2f7243", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.S60_R1.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R1_001.fastq.gz 5241227135 FASTQ S60_R1 unaligned CPTAC3 333794c4-d00b-4ba4-b1e2-965d03cde411 3658ba752d68606cc550f24707419bc9 {"aliquot_tag": "ALQ_21beaa4c", "sample": "S60", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.S60_R2.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R2_001.fastq.gz 5434732832 FASTQ S60_R2 unaligned CPTAC3 e76352e6-b50c-4f8e-bf35-0bb459e223b5 63f6469fca19dca6fd32a5883f4f1321 {"aliquot_tag": "ALQ_21beaa4c", "sample": "S60", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.transcriptome.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.transcriptome.gdc_realn.bam 12650539887 BAM transcriptome harmonized CPTAC3 80021664-1948-47cc-a89b-4ecd231b1805 08b48416bda29194393c22c04156a08d {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor"} -C3N-03767.RNA-Seq.transcriptome.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.transcriptome.gdc_realn.bam 6127456768 BAM transcriptome harmonized CPTAC3 f85cc2a9-e9eb-4985-8bd0-cea4db7637d4 5976bee5e45ff2c4299dacdfb6e57cde {"aliquot_tag": "ALQ_21beaa4c", "gdc_sample_type": "Primary Tumor"} -C3N-03767.WGS.N C3N-03767 UCEC WGS blood_normal CPT0247990002 CPT0247990002.WholeGenome.RP-1303.bam 80851906879 BAM aligned CPTAC3 1017a00f-e2db-49f0-b50e-5f23ebb7e222 13fb9a19f357c331a427e6d2a1e15ff6 {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03767.WGS.N.hg38 C3N-03767 UCEC WGS blood_normal CPT0247990002 87e2f29e-c115-408e-88e6-6f3baa0f4c1a_wgs_gdc_realn.bam 119337073391 BAM harmonized CPTAC3 ed956fcc-1f64-47dc-acaa-530cf90cbce7 8f72ca46944223c975f6e41fe44b550f {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03767.WGS.T C3N-03767 UCEC WGS tumor CPT0247970006 CPT0247970006.WholeGenome.RP-1303.bam 78588737004 BAM aligned CPTAC3 ac7e93ef-6643-4c14-84de-5f6248c4e068 2bba2dfdc2b80595fcbc7f58d354a236 {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor"} -C3N-03767.WGS.T.hg38 C3N-03767 UCEC WGS tumor CPT0247970006 2a166a00-dd48-41e2-86b5-688cde569669_wgs_gdc_realn.bam 116217897947 BAM harmonized CPTAC3 65002874-43a9-43ce-8bb1-bf61c0b0980a f4c9109accb4699ec4292bd4af88e743 {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor"} -C3N-03767.WXS.N C3N-03767 UCEC WXS blood_normal CPT0247990002 CPT0247990002.WholeExome.RP-1303.bam 18998341689 BAM aligned CPTAC3 3845190b-60c4-4375-9730-0036c80d989e e91fccc6e231a7fea541924359f20f91 {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03767.WXS.N.hg38 C3N-03767 UCEC WXS blood_normal CPT0247990002 87e2f29e-c115-408e-88e6-6f3baa0f4c1a_wxs_gdc_realn.bam 25885137145 BAM harmonized CPTAC3 df8aadf4-224d-4c03-8239-3ba94f3a109d 32a7cab7e4ba74a3ad11ca007be65a3c {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal"} -C3N-03767.WXS.T C3N-03767 UCEC WXS tumor CPT0247970006 CPT0247970006.WholeExome.RP-1303.bam 24308911840 BAM aligned CPTAC3 dc86ad85-2ffe-4ebb-85a6-40a1e1e30114 c776be835e26afaeba06a86e6a174c2d {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor"} -C3N-03767.WXS.T.hg38 C3N-03767 UCEC WXS tumor CPT0247970006 2a166a00-dd48-41e2-86b5-688cde569669_wxs_gdc_realn.bam 34066669602 BAM harmonized CPTAC3 348808fa-7a4c-4980-b745-04013cf4e1af 4da0718e93238a47c37a19cfc871faae {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor"} -C3N-03778.MethArray.Green.A C3N-03778 PDA Methylation_Array tissue_normal CPT0246900006 203561620016_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8204757d-9253-4aff-a29d-98573e40b8ac 3cc0b576af6d8d89c83260e50f18e4b5 {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03778.MethArray.Green.T C3N-03778 PDA Methylation_Array tumor CPT0246890006 203561620153_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b4be4914-9c05-41b7-9a47-cb0bdbb3c0a0 13f176c825cfc3e05f99716a6a7c167e {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor"} -C3N-03778.MethArray.Red.A C3N-03778 PDA Methylation_Array tissue_normal CPT0246900006 203561620016_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 76b735f2-6122-479d-a87b-3b2edeb0d16e 9c8ce5fddfa81a6f9238a7a1c2736756 {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03778.MethArray.Red.T C3N-03778 PDA Methylation_Array tumor CPT0246890006 203561620153_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 aeaaf74d-7228-4af6-9123-114427e2f887 376c8e648045023f1e2a2549417834f1 {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor"} -C3N-03778.miRNA-Seq.S39_L004_R1.T C3N-03778 PDA miRNA-Seq tumor CPT0246890009 190813_UNC32-K00270_0196_AH5MCWBBXY_TAGCTT_S39_L004_R1_001.unaln.bam 289370923 BAM S39_L004_R1 unaligned CPTAC3 53cab8d5-e5dc-4a9f-87f3-59eada94071b 4fdfb5b6b7294be3261a634825812258 {"aliquot_tag": "ALQ_49341433", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03778.miRNA-Seq.T.hg38 C3N-03778 PDA miRNA-Seq tumor CPT0246890009 29558d21-bd5a-4266-b99e-c6e0d17e4023_mirnaseq_gdc_realn.bam 322001244 BAM harmonized CPTAC3 c3701090-ae6a-4590-a4bc-25ae3bd43b82 1afe7e1f906b80ca0899dc0a51ffd1a9 {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor"} -C3N-03778.RNA-Seq.chimeric.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.chimeric.gdc_realn.bam 204927441 BAM chimeric harmonized CPTAC3 9ba5d2f8-990d-4956-ad4e-7083ae082135 9864d971fc74a9f3a87ae11a3b11b099 {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor"} -C3N-03778.RNA-Seq.genomic.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.genomic.gdc_realn.bam 9628306782 BAM genomic harmonized CPTAC3 a86e3026-a318-4ed5-b0e2-9a9bed8e603b 84bec7d0307be02cffbd8ed6533ee705 {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor"} -C3N-03778.RNA-Seq.S7_L002_R1.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R1_001.fastq.gz 3534292099 FASTQ S7_L002_R1 unaligned CPTAC3 d7e0f140-c87d-4ea7-98a5-5b7da9618454 6903490e4d363e009439b464b67a81d6 {"aliquot_tag": "ALQ_49341433", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03778.RNA-Seq.S7_L002_R2.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R2_001.fastq.gz 3526112851 FASTQ S7_L002_R2 unaligned CPTAC3 ba8b7185-1e3a-43ed-bf0a-7d82c45f4a36 69d9a77920bfa7b65deca29592f3a0ea {"aliquot_tag": "ALQ_49341433", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03778.RNA-Seq.transcriptome.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.transcriptome.gdc_realn.bam 7299198706 BAM transcriptome harmonized CPTAC3 b0d238f1-268f-4c73-8c48-6137b6637db4 42f40f3de86d1cfd73b0046e290d8e7c {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor"} -C3N-03778.WGS.N C3N-03778 PDA WGS blood_normal CPT0246930002 CPT0246930002.WholeGenome.RP-1303.bam 62952665777 BAM aligned CPTAC3 0f4d1b52-b733-49e7-bc05-c006ca2d27d9 3cc868de22fe860a04f85a3f541c3088 {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03778.WGS.N.hg38 C3N-03778 PDA WGS blood_normal CPT0246930002 d67e4443-bcf8-4f42-9722-9411f15f1254_wgs_gdc_realn.bam 91696186683 BAM harmonized CPTAC3 30b95e68-12f4-4533-9da9-24bf70dbd1ab 74b606c05d61d6873ee73e93252d5e3a {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03778.WGS.T C3N-03778 PDA WGS tumor CPT0246890006 CPT0246890006.WholeGenome.RP-1303.bam 131310222249 BAM aligned CPTAC3 108ebdf9-6be0-4f3f-84d1-4f469ff1b4ea 52e4d77d38d3e8edd2fa3b763dd906b1 {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor"} -C3N-03778.WGS.T.hg38 C3N-03778 PDA WGS tumor CPT0246890006 d3ca6302-3d9e-42ab-9cdd-3cd707ef3da9_wgs_gdc_realn.bam 190708884638 BAM harmonized CPTAC3 a0cbb360-c8e0-4cf6-8f92-4b23e1e78671 326f3e8d428a4ed26e76fcd94afa9e0f {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor"} -C3N-03778.WXS.A C3N-03778 PDA WXS tissue_normal CPT0246900006 CPT0246900006.WholeExome.RP-1303.bam 26213184887 BAM aligned CPTAC3 2401420a-9755-4e72-ad26-9049c6d7d055 cd1be217f83c0264f89266b51b6e523a {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03778.WXS.A.hg38 C3N-03778 PDA WXS tissue_normal CPT0246900006 2aa55b22-80ed-4325-b6cf-8a9971f119d2_wxs_gdc_realn.bam 36094012340 BAM harmonized CPTAC3 3536c4a5-3ccd-48d2-9099-a7ff93eb94ec 4882707d57b8e084c5ff627a239e23ff {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03778.WXS.N C3N-03778 PDA WXS blood_normal CPT0246930002 CPT0246930002.WholeExome.RP-1303.bam 26954836770 BAM aligned CPTAC3 43fca253-e7c5-4702-8dd4-dd86a45cd531 95adc4a37dd70af45834b42663bd2e0f {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03778.WXS.N.hg38 C3N-03778 PDA WXS blood_normal CPT0246930002 d67e4443-bcf8-4f42-9722-9411f15f1254_wxs_gdc_realn.bam 37390023306 BAM harmonized CPTAC3 d3aaa792-18f6-428f-a91c-a698b76e62da b1fb64428a20f7021feb1fb4e092dd39 {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03778.WXS.T C3N-03778 PDA WXS tumor CPT0246890006 CPT0246890006.WholeExome.RP-1303.bam 56073451607 BAM aligned CPTAC3 4ba7525c-80ae-40a0-98de-726d2a76338e d276ca25078ae1a5d9dc37bd54eecdff {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor"} -C3N-03778.WXS.T.hg38 C3N-03778 PDA WXS tumor CPT0246890006 d3ca6302-3d9e-42ab-9cdd-3cd707ef3da9_wxs_gdc_realn.bam 78260223212 BAM harmonized CPTAC3 cb5f101d-5e27-4771-a3b4-eb734be41f07 4c748301e0e363aca2c14010fc0edd5a {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor"} -C3N-03780.MethArray.Green.A C3N-03780 PDA Methylation_Array tissue_normal CPT0246950006 203561450027_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 94a1db7c-3378-4a49-9094-c42f9d7f8178 c254d5f03df52efd9db7c6e143d80065 {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.MethArray.Green.T C3N-03780 PDA Methylation_Array tumor CPT0246940006 203561620086_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 54fcd1c0-c19f-438d-ae81-006cd5d39c5d ce59d08e01416c32296c6543b53d5142 {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor"} -C3N-03780.MethArray.Red.A C3N-03780 PDA Methylation_Array tissue_normal CPT0246950006 203561450027_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 44e826c6-4adc-4850-a560-a9b5df483d9e 46285e3da500125d0f35873396c602c6 {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.MethArray.Red.T C3N-03780 PDA Methylation_Array tumor CPT0246940006 203561620086_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 67e130b1-74a1-4fea-89a0-62dda908246d c33556a4d3785a6748d33c66a0f3555c {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor"} -C3N-03780.miRNA-Seq.A.hg38 C3N-03780 PDA miRNA-Seq tissue_normal CPT0246950009 d10ad329-7193-48b0-be57-6b6a8c93a4aa_mirnaseq_gdc_realn.bam 336591301 BAM harmonized CPTAC3 6db2efe0-a69f-4d83-9e12-b0400534f345 dfa37ccd87f635c4a49a8a96bc08ccbe {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.miRNA-Seq.S147_L007_R1.A C3N-03780 PDA miRNA-Seq tissue_normal CPT0246950009 190828_UNC32-K00270_0200_BH7GVJBBXY_GTAGAG_S147_L007_R1_001.unaln.bam 303680640 BAM S147_L007_R1 unaligned CPTAC3 bccddcc3-5858-4146-9a8b-2e1f96a4f58b e0fec5372ade2554809f8b93cadc010e {"aliquot_tag": "ALQ_47982a97", "sample": "S147", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.miRNA-Seq.S169_L007_R1.T C3N-03780 PDA miRNA-Seq tumor CPT0246940009 190828_UNC32-K00270_0200_BH7GVJBBXY_GGCTAC_S169_L007_R1_001.unaln.bam 433311583 BAM S169_L007_R1 unaligned CPTAC3 47229dd3-65d5-420c-be47-6cc18c907f59 1dd783dc384986a95d78c80d38067ffa {"aliquot_tag": "ALQ_7af80327", "sample": "S169", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03780.miRNA-Seq.T.hg38 C3N-03780 PDA miRNA-Seq tumor CPT0246940009 17319d5e-7745-4f16-89d6-faefe5c5cd34_mirnaseq_gdc_realn.bam 483301628 BAM harmonized CPTAC3 7177ad7e-3dbd-4a40-a672-213f91d96edf 4f1199f89cbcef326907e000f64dd50b {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor"} -C3N-03780.RNA-Seq.chimeric.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.chimeric.gdc_realn.bam 226483136 BAM chimeric harmonized CPTAC3 4640acad-b36b-40d5-9f6f-3d6ea1b2b3d6 cc8a7157c57f8908dcb5423c64440bd3 {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.RNA-Seq.chimeric.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.chimeric.gdc_realn.bam 167253304 BAM chimeric harmonized CPTAC3 0b24c636-262a-4886-92d1-3410da853b7c 67b58ed4d67dfd4b0b4fe9894f3fee22 {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor"} -C3N-03780.RNA-Seq.genomic.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.genomic.gdc_realn.bam 11547427393 BAM genomic harmonized CPTAC3 708e847e-6938-4f9f-b75f-c1fc00f96bee c296e6618e1fdb12506a5d841ed93cb2 {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.RNA-Seq.genomic.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.genomic.gdc_realn.bam 7016295415 BAM genomic harmonized CPTAC3 17878623-f468-4d8a-9a50-8af180376310 6547eef93477cae145ef5c63560a60fc {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor"} -C3N-03780.RNA-Seq.S22_L005_R1.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R1_001.fastq.gz 4567717714 FASTQ S22_L005_R1 unaligned CPTAC3 8108edeb-bd18-486f-be0f-772a1af60742 35937ccdccaea166c209cc232f38a9a5 {"aliquot_tag": "ALQ_47982a97", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.RNA-Seq.S22_L005_R2.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R2_001.fastq.gz 4637049645 FASTQ S22_L005_R2 unaligned CPTAC3 ba1a9248-3c0d-42a8-86a6-4c34d80ce349 203a960d8f3376d3d2a2c9be635318f7 {"aliquot_tag": "ALQ_47982a97", "sample": "S22", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.RNA-Seq.S8_L002_R1.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R1_001.fastq.gz 2545110771 FASTQ S8_L002_R1 unaligned CPTAC3 7a4726d6-a4ec-4223-8097-7a98ac3eb16d 3c2d82d25c3e3f8da7d8d2043228c299 {"aliquot_tag": "ALQ_7af80327", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03780.RNA-Seq.S8_L002_R2.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R2_001.fastq.gz 2534465613 FASTQ S8_L002_R2 unaligned CPTAC3 67b965f0-79ad-41e6-bbfe-d0901c2b7e7e b2d77ed0d84542a20327117406a9acc3 {"aliquot_tag": "ALQ_7af80327", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03780.RNA-Seq.transcriptome.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.transcriptome.gdc_realn.bam 11409848911 BAM transcriptome harmonized CPTAC3 5d82d6a6-9447-4b40-9e8e-802549ace4e0 af0711a4d4eab50fc53bbc4420ab9e9a {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.RNA-Seq.transcriptome.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.transcriptome.gdc_realn.bam 5395483709 BAM transcriptome harmonized CPTAC3 7f0ec245-fbdb-4d55-80de-319f223fc59f 8407caa38eb0e2325f181458c7f3c9e2 {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor"} -C3N-03780.WGS.N C3N-03780 PDA WGS blood_normal CPT0246980002 CPT0246980002.WholeGenome.RP-1303.bam 61941393923 BAM aligned CPTAC3 7b255e10-6cad-46c0-9e3f-013902837ca4 8126b294dbfc603e728d7890051daf58 {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-03780.WGS.N.hg38 C3N-03780 PDA WGS blood_normal CPT0246980002 a1556574-d2cb-40aa-b24a-c803a70fe646_wgs_gdc_realn.bam 89796777436 BAM harmonized CPTAC3 5f880ac9-ef30-4d22-9fd9-b50b64fa9782 c96cc3c99936911b725656b324889efa {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-03780.WGS.T C3N-03780 PDA WGS tumor CPT0246940006 CPT0246940006.WholeGenome.RP-1303.bam 124703292195 BAM aligned CPTAC3 dbaa8650-d6ff-4471-89bd-6f8dfde5e4af b3859d821d6a1684cf0ae9eefe73161b {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor"} -C3N-03780.WGS.T.hg38 C3N-03780 PDA WGS tumor CPT0246940006 43f0a061-d864-4aa8-b2c3-00780f10c69c_wgs_gdc_realn.bam 179158625769 BAM harmonized CPTAC3 71a84ddb-aedf-49de-854f-cdce8601046f 88bbcccac732ad2e2ab365a2f1ce0b2f {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor"} -C3N-03780.WXS.A C3N-03780 PDA WXS tissue_normal CPT0246950006 CPT0246950006.WholeExome.RP-1303.bam 25293558438 BAM aligned CPTAC3 eeabf981-c4d9-4959-bfba-1b10cb38db3b d74c67d317eb760e73ecd0408ec815eb {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.WXS.A.hg38 C3N-03780 PDA WXS tissue_normal CPT0246950006 1da1d839-0fcb-4551-8569-faa3e4e42844_wxs_gdc_realn.bam 34382710011 BAM harmonized CPTAC3 229a50da-62a2-4d74-80de-7f5de49e7c73 3d2cacd58f2e87dec373bcad0abf15eb {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03780.WXS.N C3N-03780 PDA WXS blood_normal CPT0246980002 CPT0246980002.WholeExome.RP-1303.bam 24588978183 BAM aligned CPTAC3 05b11a06-d7c5-4903-b7f4-b9f5e5303303 82d845c151aa1b21523926e4d2b4d496 {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-03780.WXS.N.hg38 C3N-03780 PDA WXS blood_normal CPT0246980002 a1556574-d2cb-40aa-b24a-c803a70fe646_wxs_gdc_realn.bam 34042244073 BAM harmonized CPTAC3 ccde5b40-05a2-43a4-80cc-cc7bc89ca06f 23e7ea9ac7c15389889259543dd7b6a7 {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal"} -C3N-03780.WXS.T C3N-03780 PDA WXS tumor CPT0246940006 CPT0246940006.WholeExome.RP-1303.bam 71829139627 BAM aligned CPTAC3 7467299a-f169-4b1f-88e2-ac07b091d245 e4c337c3dc5c122f232e3d6f823465f4 {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor"} -C3N-03780.WXS.T.hg38 C3N-03780 PDA WXS tumor CPT0246940006 43f0a061-d864-4aa8-b2c3-00780f10c69c_wxs_gdc_realn.bam 99047621265 BAM harmonized CPTAC3 f1b58ef0-d8d6-4b0c-a4f9-59fb954bc465 05be35cba6b98f21eceafa2d4c1eed31 {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor"} -C3N-03781.MethArray.Green.T C3N-03781 HNSCC Methylation_Array tumor CPT0245550006 203271740156_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3dc8a315-545a-4dca-9167-bc876b2e3de4 1353e23728889353d51145d665c1ae00 {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor"} -C3N-03781.MethArray.Red.T C3N-03781 HNSCC Methylation_Array tumor CPT0245550006 203271740156_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 a7144e4e-4a2c-4783-9649-d12631f920d1 50a4e52df9bfdc2f9cfa28dadf3fd3fb {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor"} -C3N-03781.miRNA-Seq.S26_L006_R1.T C3N-03781 HNSCC miRNA-Seq tumor CPT0245550009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L006_R1_001.unaln.bam 220688043 BAM S26_L006_R1 unaligned CPTAC3 9c371ebe-d16f-4639-a186-7a9d3fe28aac 7c12d0eda38cdefd9c73887c00b2de1e {"aliquot_tag": "ALQ_1b2f071", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03781.miRNA-Seq.T.hg38 C3N-03781 HNSCC miRNA-Seq tumor CPT0245550009 13d66803-a089-402e-9fd0-ba56b9c65db4_mirnaseq_gdc_realn.bam 247705905 BAM harmonized CPTAC3 d281c923-3a88-4f06-a5f3-25f318a9218b 700ecd08416fec06a843bd769ad8a1bf {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor"} -C3N-03781.RNA-Seq.chimeric.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.chimeric.gdc_realn.bam 43487493 BAM chimeric harmonized CPTAC3 8e783832-b27b-48f2-9df5-d5d844eb8a4a 1a98b4e38018eef90598c7689e51d203 {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor"} -C3N-03781.RNA-Seq.genomic.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.genomic.gdc_realn.bam 8136915180 BAM genomic harmonized CPTAC3 909ec9db-4cec-441d-a62a-0c56d5d2ee67 12233dbc56325b7191cc0a045cb8c1a5 {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor"} -C3N-03781.RNA-Seq.S2_L001_R1.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R1_001.fastq.gz 3731117687 FASTQ S2_L001_R1 unaligned CPTAC3 7f75da62-f780-4bc8-96e8-0e6a45a99642 86a27f50a94ad7b58771f3576c0e4d4c {"aliquot_tag": "ALQ_1b2f071", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03781.RNA-Seq.S2_L001_R2.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R2_001.fastq.gz 4368607346 FASTQ S2_L001_R2 unaligned CPTAC3 63228bd7-68ca-4c11-98fb-32628703e58d 6a844311f548fad96699bfd181351bd6 {"aliquot_tag": "ALQ_1b2f071", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03781.RNA-Seq.transcriptome.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.transcriptome.gdc_realn.bam 11387626215 BAM transcriptome harmonized CPTAC3 355d12e8-6c53-4b9a-b0e8-031c1c6b7a32 3090c5a39b7ef8778683d8f8e1b9ed37 {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor"} -C3N-03781.WGS.N C3N-03781 HNSCC WGS blood_normal CPT0245590002 CPT0245590002.WholeGenome.RP-1303.bam 76246355753 BAM aligned CPTAC3 2cb7e358-1a35-47a8-8512-e556c216cae0 48e0575083aee515c8330048a63acd05 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03781.WGS.N.hg38 C3N-03781 HNSCC WGS blood_normal CPT0245590002 9ca2769b-5034-4bc2-a214-fb6bf2e96184_wgs_gdc_realn.bam 110363614978 BAM harmonized CPTAC3 dbaf6575-d447-4364-b983-a0529932bf63 4d53fb01f3e99496c957ffa6c8a71d08 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03781.WGS.T C3N-03781 HNSCC WGS tumor CPT0245550006 CPT0245550006.WholeGenome.RP-1303.bam 79755893779 BAM aligned CPTAC3 4bf22dfa-f5a5-4285-bb38-8cd25e465028 359ae328d88393fbafd22d681b21e67f {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor"} -C3N-03781.WGS.T.hg38 C3N-03781 HNSCC WGS tumor CPT0245550006 4fcb737a-a3a1-47b5-b8c7-9363fd57fd4d_wgs_gdc_realn.bam 115231432462 BAM harmonized CPTAC3 26a576e6-d51e-4574-a6b1-db8a047d55f2 5284dc2d7f4b5263bfb1a8919ee2c9d7 {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor"} -C3N-03781.WXS.N C3N-03781 HNSCC WXS blood_normal CPT0245590002 CPT0245590002.WholeExome.RP-1303.bam 31195727179 BAM aligned CPTAC3 8a520e61-2005-4439-af20-510fc1952993 8391a7bde78b19eac5e7a68095932dc4 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03781.WXS.N.hg38 C3N-03781 HNSCC WXS blood_normal CPT0245590002 9ca2769b-5034-4bc2-a214-fb6bf2e96184_wxs_gdc_realn.bam 42418172597 BAM harmonized CPTAC3 aeb702f9-6c45-440f-820b-b8f1d71320c5 1db9f4fa80c86d058b3ac98b3ec97550 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal"} -C3N-03781.WXS.T C3N-03781 HNSCC WXS tumor CPT0245550006 CPT0245550006.WholeExome.RP-1303.bam 27306768123 BAM aligned CPTAC3 8416e437-3af4-42c0-be29-03c56bc77a54 6435a6716462355eb77146601a3659be {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor"} -C3N-03781.WXS.T.hg38 C3N-03781 HNSCC WXS tumor CPT0245550006 4fcb737a-a3a1-47b5-b8c7-9363fd57fd4d_wxs_gdc_realn.bam 37934139340 BAM harmonized CPTAC3 a71b51a8-06f9-45a8-a7cb-3cbedbf72b66 11301db34a0b8cf251c23785dfb87340 {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor"} -C3N-03782.MethArray.Green.T C3N-03782 HNSCC Methylation_Array tumor CPT0245630006 203219650096_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0465608e-f524-4604-87c6-92c08239bf8a a4c84ead883bceddb3519a5519c8ab57 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor"} -C3N-03782.MethArray.Red.T C3N-03782 HNSCC Methylation_Array tumor CPT0245630006 203219650096_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 21850936-3a1f-4428-8203-c1aa43c827bc 3d28642f5ca85b8a088361994570db70 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor"} -C3N-03782.miRNA-Seq.S28_L006_R1.T C3N-03782 HNSCC miRNA-Seq tumor CPT0245630009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L006_R1_001.unaln.bam 159496986 BAM S28_L006_R1 unaligned CPTAC3 46abb0cb-1719-44ab-ac24-d9bf8d77b64e 19e2d4171a0ad10d28a5366d8ba9eda0 {"aliquot_tag": "ALQ_866777f", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03782.miRNA-Seq.T.hg38 C3N-03782 HNSCC miRNA-Seq tumor CPT0245630009 10348a52-e334-45e7-ab0d-7a6bb5757cdf_mirnaseq_gdc_realn.bam 179911915 BAM harmonized CPTAC3 1acde2ec-93de-42ce-8883-c2a505f3eba5 4519741ef414e346f00967566914f392 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.chimeric.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.chimeric.gdc_realn.bam 38009683 BAM chimeric harmonized CPTAC3 b7cf3608-43ed-4715-8ca1-0c7e7125aa7c 03531cccdd80dcf4f14057863610f8f9 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.chimeric.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.chimeric.gdc_realn.bam 45096173 BAM chimeric harmonized CPTAC3 2881f2c3-ba3f-463c-86e2-c220adce2aa3 aca97be18bb0630916cc9ee5b16fd071 {"aliquot_tag": "ALQ_77352640", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.genomic.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.genomic.gdc_realn.bam 8571982926 BAM genomic harmonized CPTAC3 d8e95530-9c58-4e4d-8294-d299b8805da9 8897e2d12b0b13379d018a1c33e139d9 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.genomic.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.genomic.gdc_realn.bam 11103380969 BAM genomic harmonized CPTAC3 7714a7f6-98cf-491c-8818-e251c56c5634 5c29917239f2599320be6aa5f48fb166 {"aliquot_tag": "ALQ_77352640", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.S24_R1.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R1_001.fastq.gz 5732325261 FASTQ S24_R1 unaligned CPTAC3 516f4b11-c4ab-404c-a73e-0a90acad0003 0e25f9f014c2b94f246ba37d53db7691 {"aliquot_tag": "ALQ_77352640", "sample": "S24", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.S24_R2.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R2_001.fastq.gz 5990609361 FASTQ S24_R2 unaligned CPTAC3 5bfd3bf9-5ca2-4442-889c-b154faca3dff c25de015c66678ecc511557903857940 {"aliquot_tag": "ALQ_77352640", "sample": "S24", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.S4_L001_R1.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4055189847 FASTQ S4_L001_R1 unaligned CPTAC3 01883ecf-95e9-432e-bddf-fd32b9b11267 704bc646a6d27cd6925d7ba33e7cabeb {"aliquot_tag": "ALQ_866777f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.S4_L001_R2.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4711666865 FASTQ S4_L001_R2 unaligned CPTAC3 3b56629d-27c6-4e77-a1a8-02033a0346e0 18eef57a301dc072c237ebd6a6c5203e {"aliquot_tag": "ALQ_866777f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.transcriptome.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.transcriptome.gdc_realn.bam 12706262172 BAM transcriptome harmonized CPTAC3 921ed707-6ea4-4dbf-9222-ff698660510c 0710dcd2a27612e537e0d00e0729f009 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor"} -C3N-03782.RNA-Seq.transcriptome.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.transcriptome.gdc_realn.bam 10548371176 BAM transcriptome harmonized CPTAC3 eb41f00f-93e5-4268-9a38-1cb2275b72b5 260a005291ab1006bbfdf9d1e3f7eb7b {"aliquot_tag": "ALQ_77352640", "gdc_sample_type": "Primary Tumor"} -C3N-03782.WGS.N C3N-03782 HNSCC WGS blood_normal CPT0245670002 CPT0245670002.WholeGenome.RP-1303.bam 69160197471 BAM aligned CPTAC3 862f1d23-93eb-43fd-b83f-d1eeba14213e a3ae13faa858c825980780397a9107d8 {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal"} -C3N-03782.WGS.N.hg38 C3N-03782 HNSCC WGS blood_normal CPT0245670002 050dfd8d-facd-4fc7-ac6a-0d19885cd64d_wgs_gdc_realn.bam 99971026031 BAM harmonized CPTAC3 802567d7-1975-49fc-bb47-5d403f1df38e 6b315e5b98a0c962e1c3e419ed016f5b {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal"} -C3N-03782.WGS.T C3N-03782 HNSCC WGS tumor CPT0245630006 CPT0245630006.WholeGenome.RP-1303.bam 66558324478 BAM aligned CPTAC3 daba88af-2e4c-43ff-a405-2b39381da0c0 eda61152f71122663cd1250b7b838159 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor"} -C3N-03782.WGS.T.hg38 C3N-03782 HNSCC WGS tumor CPT0245630006 7d0b4208-55d0-42a3-95f8-9dde72c4009c_wgs_gdc_realn.bam 95804227778 BAM harmonized CPTAC3 dbfb80d5-0339-4bde-bf36-0237fee2b512 d87ed9025fd59f1b1668d3687a6c9c01 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor"} -C3N-03782.WXS.N C3N-03782 HNSCC WXS blood_normal CPT0245670002 CPT0245670002.WholeExome.RP-1303.bam 42584112183 BAM aligned CPTAC3 fa5512bf-4139-4d7b-bdf8-3a05b021dd36 4ad9e3f8ce6b46e29fc83d4def00ab1c {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal"} -C3N-03782.WXS.N.hg38 C3N-03782 HNSCC WXS blood_normal CPT0245670002 050dfd8d-facd-4fc7-ac6a-0d19885cd64d_wxs_gdc_realn.bam 58210766999 BAM harmonized CPTAC3 dbce9fa3-81eb-4d6e-999c-84e5bb637e0d 33e20125f72953a0707e404dc6b49cd2 {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal"} -C3N-03782.WXS.T C3N-03782 HNSCC WXS tumor CPT0245630006 CPT0245630006.WholeExome.RP-1303.bam 21125287913 BAM aligned CPTAC3 e3df18f0-bc04-4509-a2ed-e5df7c8c6356 549f8cea70b1bd528ed8c91a24af3849 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor"} -C3N-03782.WXS.T.hg38 C3N-03782 HNSCC WXS tumor CPT0245630006 7d0b4208-55d0-42a3-95f8-9dde72c4009c_wxs_gdc_realn.bam 29256475230 BAM harmonized CPTAC3 e3536408-c09f-43f2-a06e-3aa9a582a3de 27153091591de77872f61c8497ed6b6f {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor"} -C3N-03783.MethArray.Green.T C3N-03783 HNSCC Methylation_Array tumor CPT0245730006 203220070154_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2accce3c-c65a-4b84-a631-93171521e5bc 2324841b5a429306b37fb95e60172177 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor"} -C3N-03783.MethArray.Red.T C3N-03783 HNSCC Methylation_Array tumor CPT0245730006 203220070154_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 30e73882-97f8-47a5-a068-06dd9128c3ee 98a7418b7e341af444fd17e2b5cf9add {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor"} -C3N-03783.miRNA-Seq.S30_L006_R1.T C3N-03783 HNSCC miRNA-Seq tumor CPT0245730009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L006_R1_001.unaln.bam 186281546 BAM S30_L006_R1 unaligned CPTAC3 45f7e3a2-5184-44d2-8eae-8a393dc7b33a a539c7d5b9e67d70b9b09d6a164965ac {"aliquot_tag": "ALQ_c33aa4da", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03783.miRNA-Seq.T.hg38 C3N-03783 HNSCC miRNA-Seq tumor CPT0245730009 df1b38fb-069d-44f9-a6fa-a8d460ec33ec_mirnaseq_gdc_realn.bam 208183504 BAM harmonized CPTAC3 62c86bea-8355-4cb5-989a-d22062aba85c 143849a1e2b181dc320df1428ba4baf6 {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.chimeric.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.chimeric.gdc_realn.bam 47955896 BAM chimeric harmonized CPTAC3 e23685df-44bc-448d-a320-8d50e7485316 8e4c902025d6f255d61e45654ffb46ea {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.chimeric.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.chimeric.gdc_realn.bam 195123286 BAM chimeric harmonized CPTAC3 9a3084e0-0dfd-481b-9089-3e75826618d6 83b4646cd32d35aac406799015fa23be {"aliquot_tag": "ALQ_df57520", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.genomic.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.genomic.gdc_realn.bam 9195298582 BAM genomic harmonized CPTAC3 af9f5b14-6fc8-4dac-8ef4-8d54093219ca 599db3c7a7759b08f599fd73d9e6bc1e {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.genomic.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.genomic.gdc_realn.bam 10773898624 BAM genomic harmonized CPTAC3 b97939b7-9851-4e30-b588-55e7545cbe80 67a25f3238100a26a80556f70fa926c1 {"aliquot_tag": "ALQ_df57520", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.S1_L001_R1.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R1_001.fastq.gz 4390779195 FASTQ S1_L001_R1 unaligned CPTAC3 8d84740f-c498-4448-9c93-026f120190ba b5db0acb6b348e48935d4f1a5d37b52c {"aliquot_tag": "ALQ_c33aa4da", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.S1_L001_R2.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R2_001.fastq.gz 4889416199 FASTQ S1_L001_R2 unaligned CPTAC3 aaea44c9-7660-4445-8160-d22b946eca15 1e118aeb2355eab7140173e0cd5ddb0f {"aliquot_tag": "ALQ_c33aa4da", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.S53_R1.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R1_001.fastq.gz 8797443848 FASTQ S53_R1 unaligned CPTAC3 c2c7a172-05a7-4be2-9d17-dfae7010d969 2e4e5c50559e3ba42cc82941ae5e7650 {"aliquot_tag": "ALQ_df57520", "sample": "S53", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.S53_R2.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R2_001.fastq.gz 9073985197 FASTQ S53_R2 unaligned CPTAC3 3abec326-06bf-40a9-a627-2f1051098ddb 861e28e3433417bb68a3e2860a2770fd {"aliquot_tag": "ALQ_df57520", "sample": "S53", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.transcriptome.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.transcriptome.gdc_realn.bam 13310816514 BAM transcriptome harmonized CPTAC3 f645f0c8-6286-4f9c-9f08-aef9b1139dde 1bc984474867e1ee5954ae1478c95303 {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor"} -C3N-03783.RNA-Seq.transcriptome.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.transcriptome.gdc_realn.bam 6900169699 BAM transcriptome harmonized CPTAC3 ba65f528-491d-4da5-9732-b3d2b284a1fb 74b44d5280656fbaa0d24e6a42182857 {"aliquot_tag": "ALQ_df57520", "gdc_sample_type": "Primary Tumor"} -C3N-03783.WGS.N C3N-03783 HNSCC WGS blood_normal CPT0245770002 CPT0245770002.WholeGenome.RP-1303.bam 66951127096 BAM aligned CPTAC3 e0345b04-c29f-4b66-92d4-eff47dfc985c 71cfd0af396fe18e53dff937245643d2 {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal"} -C3N-03783.WGS.N.hg38 C3N-03783 HNSCC WGS blood_normal CPT0245770002 64224eeb-53e4-45e7-9cd8-4c0f7d2af027_wgs_gdc_realn.bam 95893849570 BAM harmonized CPTAC3 50c68c62-9e46-4bc9-92f5-0ca527c593db 59dd6cfb67488ec7e86bc95def6fa4a7 {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal"} -C3N-03783.WGS.T C3N-03783 HNSCC WGS tumor CPT0245730006 CPT0245730006.WholeGenome.RP-1303.bam 67021780356 BAM aligned CPTAC3 521945c7-9ac8-4f6e-8d7b-3426ae408bf6 f273e26d220905ba72af4549da839883 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor"} -C3N-03783.WGS.T.hg38 C3N-03783 HNSCC WGS tumor CPT0245730006 93f9f952-a59a-4f53-bc01-fe70f801d0b2_wgs_gdc_realn.bam 96705559784 BAM harmonized CPTAC3 15227955-cb8b-48d0-8035-804fec2bf547 35f5ceef34eae42a4480feecf711a503 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor"} -C3N-03783.WXS.N C3N-03783 HNSCC WXS blood_normal CPT0245770002 CPT0245770002.WholeExome.RP-1303.bam 28795346184 BAM aligned CPTAC3 bf64d2f0-ee38-47d8-9953-0da4074bff60 7e6f694aa4c2db5f38a24e69f66f17b8 {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal"} -C3N-03783.WXS.N.hg38 C3N-03783 HNSCC WXS blood_normal CPT0245770002 64224eeb-53e4-45e7-9cd8-4c0f7d2af027_wxs_gdc_realn.bam 38811916166 BAM harmonized CPTAC3 7592f753-b411-41c6-8abc-1964e70eb1d4 6d8869e2b85a98f37f87410acd88164d {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal"} -C3N-03783.WXS.T C3N-03783 HNSCC WXS tumor CPT0245730006 CPT0245730006.WholeExome.RP-1303.bam 25016978883 BAM aligned CPTAC3 166fdf7b-9251-4460-96d7-1b25bbd9ff0c 69df80eccf57dbe5535751a5d9b8bd60 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor"} -C3N-03783.WXS.T.hg38 C3N-03783 HNSCC WXS tumor CPT0245730006 93f9f952-a59a-4f53-bc01-fe70f801d0b2_wxs_gdc_realn.bam 34497705197 BAM harmonized CPTAC3 1f70bce7-29ee-45b7-8424-0eeb5f219bd8 074785ce97423d3e6e9b42829da84945 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor"} -C3N-03785.MethArray.Green.T C3N-03785 HNSCC Methylation_Array tumor CPT0245680006 203219640047_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 3af1c39b-e741-4418-b2ed-400a890b098c d4c7dfa7ea798363a392223e4bb782d5 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor"} -C3N-03785.MethArray.Red.T C3N-03785 HNSCC Methylation_Array tumor CPT0245680006 203219640047_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 53611f5b-35d6-4862-afc5-8c0098411093 6b17fabf3a6327e18c353688a0ea9ad2 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor"} -C3N-03785.miRNA-Seq.S29_L006_R1.T C3N-03785 HNSCC miRNA-Seq tumor CPT0245680009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L006_R1_001.unaln.bam 202538382 BAM S29_L006_R1 unaligned CPTAC3 60fb927a-def1-4d00-bb59-1cc2d4a2576b 17c3e852656c945e88e28ee5d819e0a1 {"aliquot_tag": "ALQ_7fb6466e", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03785.miRNA-Seq.T.hg38 C3N-03785 HNSCC miRNA-Seq tumor CPT0245680009 6932485f-b504-4ea3-8b35-5c5ab8ac3d9d_mirnaseq_gdc_realn.bam 227908611 BAM harmonized CPTAC3 5d182dfa-fe9b-4a2a-8d8f-fa184e3c69fe 249ca38f314839a112991f69384e02e0 {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.chimeric.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.chimeric.gdc_realn.bam 43435694 BAM chimeric harmonized CPTAC3 2214c24e-3842-4e28-8307-f2f804f0907c 043dbedcd38fefc6ad78935b3b7d6706 {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.chimeric.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.chimeric.gdc_realn.bam 210104300 BAM chimeric harmonized CPTAC3 9969fd85-0778-4fc6-bc7b-98e1e6cdd55f 30b143496855868f87832c4cfd528870 {"aliquot_tag": "ALQ_82b58080", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.genomic.gdc_realn.bam 8621214730 BAM genomic harmonized CPTAC3 32312923-c2cb-4d7e-be0a-b935f2a78103 e10c34c319d7241d0d96789abb25a58e {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.genomic.gdc_realn.bam 11684072769 BAM genomic harmonized CPTAC3 1c122ebe-f0fd-4d64-9033-fd096c18acbd cf5600f8319a9cf77866386b7208e65f {"aliquot_tag": "ALQ_82b58080", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.S2_L001_R1.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R1_001.fastq.gz 4188448557 FASTQ S2_L001_R1 unaligned CPTAC3 20175374-0734-4641-854c-024ae0497cac 98f24e34c16d49f9607d1288e7900e6b {"aliquot_tag": "ALQ_7fb6466e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.S2_L001_R2.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R2_001.fastq.gz 4640347212 FASTQ S2_L001_R2 unaligned CPTAC3 d7bc6f70-e6b1-4dec-980e-8aac75250ae6 4354258b969adc0e458da9733f95e2bb {"aliquot_tag": "ALQ_7fb6466e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.S57_R1.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R1_001.fastq.gz 7681162215 FASTQ S57_R1 unaligned CPTAC3 f0ff1012-7fea-4576-a2bf-f23a8c483ad5 d5d9a9a24948bafa3e2fda50bd129566 {"aliquot_tag": "ALQ_82b58080", "sample": "S57", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.S57_R2.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R2_001.fastq.gz 7946218093 FASTQ S57_R2 unaligned CPTAC3 e2809076-3d8e-4a38-b328-4cd384377e7a c4a761e360467c46fe15793cc7fd25d8 {"aliquot_tag": "ALQ_82b58080", "sample": "S57", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.transcriptome.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.transcriptome.gdc_realn.bam 11018516213 BAM transcriptome harmonized CPTAC3 ed3dcb38-f829-4685-ab1a-7aca7520b216 ddc785ff3c446c88d12940b744e59f25 {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor"} -C3N-03785.RNA-Seq.transcriptome.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.transcriptome.gdc_realn.bam 6225811419 BAM transcriptome harmonized CPTAC3 54b8edf9-46f1-4c95-a48b-07e8cbff7337 bb5291d79c89db33f06f4970b42d5bcf {"aliquot_tag": "ALQ_82b58080", "gdc_sample_type": "Primary Tumor"} -C3N-03785.WGS.N C3N-03785 HNSCC WGS blood_normal CPT0245720002 CPT0245720002.WholeGenome.RP-1303.bam 98079670435 BAM aligned CPTAC3 1cac1b43-3190-4658-9f5d-7cc642a5da3b 6af63babae6446bf28c6179fae2f2ddb {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03785.WGS.N.hg38 C3N-03785 HNSCC WGS blood_normal CPT0245720002 89026d9b-b739-4d8f-8bf1-81541034c417_wgs_gdc_realn.bam 142615149954 BAM harmonized CPTAC3 4db256f6-bad6-403d-905b-716335777259 baaeb998b886b09dd4b40c48804b0b05 {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03785.WGS.T C3N-03785 HNSCC WGS tumor CPT0245680006 CPT0245680006.WholeGenome.RP-1303.bam 69022650723 BAM aligned CPTAC3 cabe110a-4e85-436c-a9c9-57413d61a345 73dede16fd29582e7cd344b7ccee229a {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor"} -C3N-03785.WGS.T.hg38 C3N-03785 HNSCC WGS tumor CPT0245680006 58d9cb22-cc39-4db7-b889-647d69bed821_wgs_gdc_realn.bam 99934721800 BAM harmonized CPTAC3 f85322af-188a-4e34-ba6c-b28a0344f50a 7e9e4aa760c93d1ba128c6311e29fa00 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor"} -C3N-03785.WXS.N C3N-03785 HNSCC WXS blood_normal CPT0245720002 CPT0245720002.WholeExome.RP-1303.bam 25053016566 BAM aligned CPTAC3 862729c6-6a6d-4e0b-abd7-aa56bf81c3f0 448293508b80bfbcc4658d580d73e1fb {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03785.WXS.N.hg38 C3N-03785 HNSCC WXS blood_normal CPT0245720002 89026d9b-b739-4d8f-8bf1-81541034c417_wxs_gdc_realn.bam 34737306129 BAM harmonized CPTAC3 215dc24d-7f8b-4bb7-b7c2-4c25980ff0c0 9f66127233d88ca8ac2071c42f3a4501 {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03785.WXS.T C3N-03785 HNSCC WXS tumor CPT0245680006 CPT0245680006.WholeExome.RP-1303.bam 23064821578 BAM aligned CPTAC3 9e7b5bab-8679-4354-9489-149e07df005d 04f7d520ced79614a1817896884a9b46 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor"} -C3N-03785.WXS.T.hg38 C3N-03785 HNSCC WXS tumor CPT0245680006 58d9cb22-cc39-4db7-b889-647d69bed821_wxs_gdc_realn.bam 31718463963 BAM harmonized CPTAC3 c93c4841-5d45-4476-b6a2-935ba9c20f82 34917359501902f86f17dc1cea7d97e5 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor"} -C3N-03788.MethArray.Green.T C3N-03788 GBM Methylation_Array tumor CPT0457770011 206250290128_R07C01_Grn.idat 13677950 IDAT Green NA CPTAC3 cc55834b-f2a3-4144-b0af-39170068fc1d 4b145b2cdf0df816b97155059d34b878 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor"} -C3N-03788.MethArray.Red.T C3N-03788 GBM Methylation_Array tumor CPT0457770011 206250290128_R07C01_Red.idat 13677950 IDAT Red NA CPTAC3 c88b0907-bfc3-42fb-81d1-b8f069fc9c85 7ac51ce78eaa54f0509518b40ca3d1c3 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor"} -C3N-03788.miRNA-Seq.S8_L003_R1.T C3N-03788 GBM miRNA-Seq tumor CPT0457770008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTCAGA_S8_L003_R1_001.unaln.bam 381775024 BAM S8_L003_R1 unaligned CPTAC3 df8726e2-4517-4a7a-bdaf-9289ab6ad3f5 3ecb5f14597b720c4de18afc61cf8f8a {"aliquot_tag": "ALQ_69925ab1", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03788.miRNA-Seq.T.hg38 C3N-03788 GBM miRNA-Seq tumor CPT0457770008 d8197cf6-869b-455b-b0ac-00d34a7e3eb6_mirnaseq_gdc_realn.bam 443353789 BAM harmonized CPTAC3 d4df0370-29b4-4b40-b64d-c07638d547b4 5ee687f137f09c2ce42fda76d035aa94 {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor"} -C3N-03788.RNA-Seq.S1_L006_R1.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R1_001.fastq.gz 3600988531 FASTQ S1_L006_R1 unaligned CPTAC3 384ad3cb-eafa-44e5-b6bd-6668d2cbf435 d4637272b0fb6f91adfeb3cb94b7525e {"aliquot_tag": "ALQ_69925ab1", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03788.RNA-Seq.S1_L006_R2.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R2_001.fastq.gz 3808720166 FASTQ S1_L006_R2 unaligned CPTAC3 8ea7fb5a-7ab8-4ce4-bf91-abeb62546d76 29397817e7be40c6146805e5c326309c {"aliquot_tag": "ALQ_69925ab1", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03789.MethArray.Green.T C3N-03789 GBM Methylation_Array tumor CPT0244860006 204372030022_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 36949622-9245-4639-adbb-5d3825974411 b2699c6a827038d7e364e088d58b08b0 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor"} -C3N-03789.MethArray.Red.T C3N-03789 GBM Methylation_Array tumor CPT0244860006 204372030022_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 801da269-0c53-48e6-9335-e70300569747 4458434e8c9e1e9ee42b9674d717f239 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor"} -C3N-03789.miRNA-Seq.S27_L002_R1.T C3N-03789 GBM miRNA-Seq tumor CPT0244860009 200403_UNC31-K00269_0274_AHCF7GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 225451718 BAM S27_L002_R1 unaligned CPTAC3 b660df27-cdb3-4bb7-960c-cd23e8296233 ff52890e8305588e649255f692288db9 {"aliquot_tag": "ALQ_5cfb92cb", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03789.miRNA-Seq.T.hg38 C3N-03789 GBM miRNA-Seq tumor CPT0244860009 534a589d-dc25-4c71-85fc-d65334cd27ea_mirnaseq_gdc_realn.bam 249583825 BAM harmonized CPTAC3 11545c89-0bfc-4d34-adcb-c5ad211f73f2 27ddc12b2ad3a7604b1eae155f39dfa1 {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor"} -C3N-03789.RNA-Seq.chimeric.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.chimeric.gdc_realn.bam 257911886 BAM chimeric harmonized CPTAC3 c08fb656-b40e-4d2f-b57f-1158801b27cf fb82e204766eb2970edbe0aac7e5506a {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor"} -C3N-03789.RNA-Seq.genomic.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.genomic.gdc_realn.bam 9898430734 BAM genomic harmonized CPTAC3 3a8ad91f-6b6d-41a8-9eba-6b92e87e5efd 24d28fea3b68fe075268e05dcaea8fc9 {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor"} -C3N-03789.RNA-Seq.S58_L006_R1.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R1_001.fastq.gz 4214876403 FASTQ S58_L006_R1 unaligned CPTAC3 de40a9c3-603d-44e2-a76e-9b4a98d3f482 885cf101d94c47ab398d0a77b062ba57 {"aliquot_tag": "ALQ_5cfb92cb", "sample": "S58", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03789.RNA-Seq.S58_L006_R2.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ S58_L006_R2 unaligned CPTAC3 0f25e421-ff9d-41ab-bef9-2503901bdb40 8492a7c7df0b07c7410a3373f05e1322 {"aliquot_tag": "ALQ_5cfb92cb", "sample": "S58", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03789.RNA-Seq.transcriptome.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.transcriptome.gdc_realn.bam 10918795234 BAM transcriptome harmonized CPTAC3 cedb4de6-ea54-4ec8-8aad-16aa836a10cb 6f601acf8394bf923f17dd4226cad072 {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor"} -C3N-03789.WGS.N C3N-03789 GBM WGS blood_normal CPT0244880002 CPT0244880002.WholeGenome.RP-2158.bam 32902918385 BAM aligned CPTAC3 f5c73bfd-9555-4862-bdc0-e05493aa48fb 8be505ed8103b58a1d3b473b30a60c50 {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal"} -C3N-03789.WGS.N.hg38 C3N-03789 GBM WGS blood_normal CPT0244880002 d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wgs_gdc_realn.bam 100034438784 BAM harmonized CPTAC3 c300354a-780b-4904-91d1-54e08b324a01 ac8e480fdfec3292c6bd2d26777f821b {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal"} -C3N-03789.WGS.T C3N-03789 GBM WGS tumor CPT0244860006 CPT0244860006.WholeGenome.RP-2158.bam 21896768790 BAM aligned CPTAC3 8ecd6587-05f6-42d4-b7a5-bd592a8ecef5 702a7d0055057a49f9dd5e7008888e66 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor"} -C3N-03789.WGS.T.hg38 C3N-03789 GBM WGS tumor CPT0244860006 81c4a568-2fb2-44a1-b5cd-0654380d459a_wgs_gdc_realn.bam 62404522107 BAM harmonized CPTAC3 5e036af9-a3a3-48ed-ab3e-5d5406e9b91f b543525ac07e2a30d52b39ca79c4a6a7 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor"} -C3N-03789.WXS.N C3N-03789 GBM WXS blood_normal CPT0244880002 CPT0244880002.WholeExome.RP-1303.bam 24719484242 BAM aligned CPTAC3 f1de1731-390b-499e-8c2b-25add41d85e8 1acdcffffdf3d3d7ab5086fae3a6e337 {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal"} -C3N-03789.WXS.N.hg38 C3N-03789 GBM WXS blood_normal CPT0244880002 d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wxs_gdc_realn.bam 34710561156 BAM harmonized CPTAC3 502434e4-f053-44d4-b480-d40873a0c659 bf06f88cc9dfb2b7c91f5d350a819985 {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal"} -C3N-03789.WXS.T C3N-03789 GBM WXS tumor CPT0244860006 CPT0244860006.WholeExome.RP-1303.bam 18044673025 BAM aligned CPTAC3 e5dbc9e9-c152-4944-83a8-74e70f97e3d6 804ca1e0e52fc5eb43db3db490d697d0 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor"} -C3N-03789.WXS.T.hg38 C3N-03789 GBM WXS tumor CPT0244860006 81c4a568-2fb2-44a1-b5cd-0654380d459a_wxs_gdc_realn.bam 25433729718 BAM harmonized CPTAC3 cfa3caaf-f484-40f9-bd13-3708af6901c4 d444627e4e15e46b087a9a535dabe7e8 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor"} -C3N-03791.MethArray.Green.T C3N-03791 GBM Methylation_Array tumor CPT0248160007 204367490061_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4ee7dfa7-abdb-49a9-b60d-7a485079aa3e 819654387b42730425a76e97906cfa7b {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor"} -C3N-03791.MethArray.Red.T C3N-03791 GBM Methylation_Array tumor CPT0248160007 204367490061_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa4361ca-a50e-4b54-9184-70aeb4ff399e cac71cd107673a14bc856f8017dab04f {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor"} -C3N-03791.miRNA-Seq.S34_L002_R1.T C3N-03791 GBM miRNA-Seq tumor CPT0248160010 200403_UNC31-K00269_0274_AHCF7GBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 211919722 BAM S34_L002_R1 unaligned CPTAC3 c7ef9ccf-ea0f-4031-a4ba-e3ba563aa40d ef97f7ca01896cc149c083d9fbbea688 {"aliquot_tag": "ALQ_dc932092", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03791.miRNA-Seq.T.hg38 C3N-03791 GBM miRNA-Seq tumor CPT0248160010 0b734a68-df90-40a5-8f66-54703e80d84c_mirnaseq_gdc_realn.bam 234465379 BAM harmonized CPTAC3 fd2bd498-1128-45d6-9d50-b1cd46a7690f 5d659a786d1fb7aa021c9a6abeda814f {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor"} -C3N-03791.RNA-Seq.chimeric.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.chimeric.gdc_realn.bam 166237444 BAM chimeric harmonized CPTAC3 5b9a2d99-63a3-43e5-bd3d-beabddc82f34 f83693eaec3a3d5d5ec8f1c1da59eacf {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor"} -C3N-03791.RNA-Seq.genomic.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.genomic.gdc_realn.bam 8037991660 BAM genomic harmonized CPTAC3 fab3845a-5041-4bf2-aff3-3173f8e8d1c5 bfe716e7b502eb0abf5c1b19fd07d838 {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor"} -C3N-03791.RNA-Seq.S2_L001_R1.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ S2_L001_R1 unaligned CPTAC3 278403a7-7c34-4b9e-97d5-98df7b34b730 7a8bbaed21fdf9861045ff00de5b66c9 {"aliquot_tag": "ALQ_dc932092", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03791.RNA-Seq.S2_L001_R2.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ S2_L001_R2 unaligned CPTAC3 e0f0a291-d112-4eac-affa-355d24b03424 cf3d615df0f2b5f6c1e6b9cde957dbd7 {"aliquot_tag": "ALQ_dc932092", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03791.RNA-Seq.transcriptome.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.transcriptome.gdc_realn.bam 7697110943 BAM transcriptome harmonized CPTAC3 fc747ae7-24bb-4879-9459-c2941a2896e3 9e1d4620401f9b0264386e22f5f6195b {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor"} -C3N-03791.WGS.N C3N-03791 GBM WGS blood_normal CPT0248220002 CPT0248220002.WholeGenome.RP-2158.bam 26498624553 BAM aligned CPTAC3 3ba6512e-5785-4e32-bce6-13f8b80aad3a 7a926e3c57879ea3f616ed361b6606ad {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal"} -C3N-03791.WGS.N.hg38 C3N-03791 GBM WGS blood_normal CPT0248220002 2b68f934-9910-4dc6-adc3-1cf82764a7a0_wgs_gdc_realn.bam 74021298457 BAM harmonized CPTAC3 dbb9edea-f9d6-4add-b71f-a6229f36db20 99d38b70852f3893163262003da66183 {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal"} -C3N-03791.WGS.T C3N-03791 GBM WGS tumor CPT0248160007 CPT0248160007.WholeGenome.RP-2158.bam 21814922440 BAM aligned CPTAC3 e8b7da1d-caf4-465b-871e-bd7d05cbc406 45206d11406eeeb9a7d1093a8edb4517 {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor"} -C3N-03791.WGS.T.hg38 C3N-03791 GBM WGS tumor CPT0248160007 a12853e7-7ad9-40e5-a71a-b50c18db7465_wgs_gdc_realn.bam 64319191270 BAM harmonized CPTAC3 9d67076c-f460-4452-b785-b2aa0e0ae8df 3ec471309e74bf8cec836fc07bcf8560 {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor"} -C3N-03791.WXS.N C3N-03791 GBM WXS blood_normal CPT0248220002 CPT0248220002.WholeExome.RP-1303.bam 33064684299 BAM aligned CPTAC3 d1b09246-acf2-42d0-9183-c449f8a30275 34dddf66eecfdae246f3fd63ed8d60af {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal"} -C3N-03791.WXS.N.hg38 C3N-03791 GBM WXS blood_normal CPT0248220002 2b68f934-9910-4dc6-adc3-1cf82764a7a0_wxs_gdc_realn.bam 44267823987 BAM harmonized CPTAC3 16b1732d-19aa-4414-a010-261a7c7295d1 b8f932556d9e3d7273ec07972d4e0c73 {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal"} -C3N-03791.WXS.T C3N-03791 GBM WXS tumor CPT0248160007 CPT0248160007.WholeExome.RP-1303.bam 20778146670 BAM aligned CPTAC3 8db33fa4-0c4d-4d3a-bb9e-843f5d15f771 4e975d1938dcb9509fb5549017504b16 {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor"} -C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor CPT0248160007 a12853e7-7ad9-40e5-a71a-b50c18db7465_wxs_gdc_realn.bam 28912229200 BAM harmonized CPTAC3 93a0f29b-98ed-46e0-8f8b-03e4b9e363db 4e299fb0c0ffda2f64f8d43588fb878b {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor"} -C3N-03792.MethArray.Green.T C3N-03792 GBM Methylation_Array tumor CPT0292720006 204930640083_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b8fe91c6-995f-4b05-b60d-b8e52f6a1609 8ba9e745f47d25c00251e9dbc3242112 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor"} -C3N-03792.MethArray.Red.T C3N-03792 GBM Methylation_Array tumor CPT0292720006 204930640083_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 42e1721b-639e-41a9-9da0-69edce27749f def05517ac31cc5ae7d13d18cec96ddd {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor"} -C3N-03792.miRNA-Seq.S39_L007_R1.T C3N-03792 GBM miRNA-Seq tumor CPT0292720009 201209_UNC32-K00270_0265_AHJ55WBBXY_TGACCA_S39_L007_R1_001.unaln.bam 244313348 BAM S39_L007_R1 unaligned CPTAC3 3a95afa8-0cee-4b25-ae66-30901cbe1a34 8c8174ab15872e79256ee95566f44dd3 {"aliquot_tag": "ALQ_a0f8a635", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03792.miRNA-Seq.T.hg38 C3N-03792 GBM miRNA-Seq tumor CPT0292720009 83e55470-176d-4404-aef6-3d00b8b883b9_mirnaseq_gdc_realn.bam 273353919 BAM harmonized CPTAC3 64f2837e-ac5b-4b05-83db-cff8a7e202b3 36ecf70a4363c54b20eef640f49a758a {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor"} -C3N-03792.RNA-Seq.chimeric.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.chimeric.gdc_realn.bam 779969154 BAM chimeric harmonized CPTAC3 ccf89515-8469-45ac-8aac-2c03c029a903 ee2070cdd063419b586d65eee2b6aec0 {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor"} -C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.genomic.gdc_realn.bam 8634408522 BAM genomic harmonized CPTAC3 d32ab761-f74c-4264-b248-f792d99173e5 35966c147e5440caa1b61013f79483a3 {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor"} -C3N-03792.RNA-Seq.S9_L003_R1.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ S9_L003_R1 unaligned CPTAC3 dc36ac00-dcf4-4714-9a22-e1b19e708b23 61a607b7d255f541e9c5b6f656a0be25 {"aliquot_tag": "ALQ_a0f8a635", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03792.RNA-Seq.S9_L003_R2.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ S9_L003_R2 unaligned CPTAC3 a7b201e1-89f6-4622-b6d8-a6271f6ab253 a0f10daed3f37e74ae2c5b7b15f29aee {"aliquot_tag": "ALQ_a0f8a635", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03792.RNA-Seq.transcriptome.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.transcriptome.gdc_realn.bam 9436978940 BAM transcriptome harmonized CPTAC3 56f182b1-225f-4cf7-8c05-bd42c91609b5 e62e82dfe41ff3a02c6030b8f455690a {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor"} -C3N-03792.WGS.N C3N-03792 GBM WGS blood_normal CPT0292740002 CPT0292740002.WholeGenome.RP-2158.bam 26554543598 BAM aligned CPTAC3 9f010cbf-7023-41b0-b6d8-60d9f7ddc4c4 89b222f52c79b6526d36d48ec8b6417f {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03792.WGS.N.hg38 C3N-03792 GBM WGS blood_normal CPT0292740002 3d7cbf18-a043-454f-8905-cd5f885c8585_wgs_gdc_realn.bam 82016915053 BAM harmonized CPTAC3 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 b6ad168816423f3dd004758f59764d6f {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03792.WGS.T C3N-03792 GBM WGS tumor CPT0292720006 CPT0292720006.WholeGenome.RP-2158.bam 24306496119 BAM aligned CPTAC3 53615a7a-6378-4b4f-804c-266c02f512f1 7aee45e623770016561c477b8774c8c3 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor"} -C3N-03792.WGS.T.hg38 C3N-03792 GBM WGS tumor CPT0292720006 e3217e6c-3148-4949-9082-6a364c7f5166_wgs_gdc_realn.bam 70908445543 BAM harmonized CPTAC3 589da87e-23f6-4ea0-a617-aca6a439932b 8099416d0d490524e0e0a6d3a1172909 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor"} -C3N-03792.WXS.N C3N-03792 GBM WXS blood_normal CPT0292740002 CPT0292740002.WholeExome.RP-1303.bam 22254955383 BAM aligned CPTAC3 8e2c02df-13d4-4874-9846-dcaad8847f04 cb8a03e9845b788b41fea8d6d1a13584 {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03792.WXS.N.hg38 C3N-03792 GBM WXS blood_normal CPT0292740002 3d7cbf18-a043-454f-8905-cd5f885c8585_wxs_gdc_realn.bam 31161726626 BAM harmonized CPTAC3 adfca261-c468-4f30-8049-2aaa440ba357 85dad352932e40ff415668ba2fd49bbc {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal"} -C3N-03792.WXS.T C3N-03792 GBM WXS tumor CPT0292720006 CPT0292720006.WholeExome.RP-1303.bam 25530290850 BAM aligned CPTAC3 abcd035f-5b1a-4bad-8a77-53f065088d4b 176ee3a16da362a8f7c128c9b3ae0494 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor"} -C3N-03792.WXS.T.hg38 C3N-03792 GBM WXS tumor CPT0292720006 e3217e6c-3148-4949-9082-6a364c7f5166_wxs_gdc_realn.bam 34687747029 BAM harmonized CPTAC3 5dda791c-46ac-47fb-a77d-bd046ba2c254 e36159263c6ca8c48194d3f4c05c0370 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor"} -C3N-03796.MethArray.Green.T C3N-03796 GBM Methylation_Array tumor CPT0285160006 204930640082_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 40e3819f-c307-4a74-8bf0-cf6bf9b4a471 0850ef4c3f1d8b73a96b3ff54fb25917 {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor"} -C3N-03796.MethArray.Red.T C3N-03796 GBM Methylation_Array tumor CPT0285160006 204930640082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 1b6cc960-ee6a-438a-858a-ef3fcd464304 e62b66b0649b8fdde0624bf2df96d814 {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor"} -C3N-03796.miRNA-Seq.S40_L007_R1.T C3N-03796 GBM miRNA-Seq tumor CPT0285160009 201209_UNC32-K00270_0265_AHJ55WBBXY_TTAGGC_S40_L007_R1_001.unaln.bam 218247021 BAM S40_L007_R1 unaligned CPTAC3 c8ea651a-1acd-4d2d-9eeb-ba9b6b431dba da3281ca424a165f206878cc53ad5d31 {"aliquot_tag": "ALQ_8a2cddf8", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03796.miRNA-Seq.T.hg38 C3N-03796 GBM miRNA-Seq tumor CPT0285160009 405473ee-4448-4b51-a15e-3f161b90d61b_mirnaseq_gdc_realn.bam 243404378 BAM harmonized CPTAC3 1605bf51-0676-46de-b9e0-3a010f67e1db 39d8b84a38546962c340b56a8360908a {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor"} -C3N-03796.RNA-Seq.chimeric.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.chimeric.gdc_realn.bam 860171610 BAM chimeric harmonized CPTAC3 d43e6ae8-74e0-4cb9-8220-f709d0672c9b ef3644e3a47c5c8ab447a9168c364038 {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor"} -C3N-03796.RNA-Seq.genomic.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.genomic.gdc_realn.bam 12060009459 BAM genomic harmonized CPTAC3 ae9438f6-91dd-4097-b5b5-d042c7453049 dd5c43d8e6c1ce0b5ca33e119b379b88 {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor"} -C3N-03796.RNA-Seq.S10_L003_R1.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ S10_L003_R1 unaligned CPTAC3 b454290d-cc02-4dba-9054-63f52ec8be2c da3b180947ae187d9f4913ac73b86a7e {"aliquot_tag": "ALQ_8a2cddf8", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03796.RNA-Seq.S10_L003_R2.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ S10_L003_R2 unaligned CPTAC3 a8e13d55-81ac-4ea7-bdf8-4113326e7051 43fc642d3589af3fbc6fcefddf6b6ff3 {"aliquot_tag": "ALQ_8a2cddf8", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03796.RNA-Seq.transcriptome.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.transcriptome.gdc_realn.bam 13364653290 BAM transcriptome harmonized CPTAC3 5b0d57a9-1278-4895-972b-47b5ddab33b0 c3c22f672159d7d3abd94bd152dadb76 {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor"} -C3N-03796.WGS.N C3N-03796 GBM WGS blood_normal CPT0285170002 CPT0285170002.WholeGenome.RP-2158.bam 26251928465 BAM aligned CPTAC3 0886d2a8-bb29-46eb-98f3-46981d11faf8 e4159fbe70eac8dd22a81cc854a476b9 {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03796.WGS.N.hg38 C3N-03796 GBM WGS blood_normal CPT0285170002 108e1690-f144-4cef-a077-4bf4a30f3205_wgs_gdc_realn.bam 75789850346 BAM harmonized CPTAC3 44090d4f-41a1-4a1c-840a-f1c20832adde 6124b6309417a093df21c6587dc921b9 {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03796.WGS.T C3N-03796 GBM WGS tumor CPT0285160006 CPT0285160006.WholeGenome.RP-2158.bam 19793089386 BAM aligned CPTAC3 79fd3ccf-6a9f-403d-9bc8-55212dc9ad1a 446a1f2dfb79766993216a4de9d98a8a {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor"} -C3N-03796.WGS.T.hg38 C3N-03796 GBM WGS tumor CPT0285160006 a34a1b81-a986-4402-a383-1bc5816a0e7e_wgs_gdc_realn.bam 59675089295 BAM harmonized CPTAC3 dab304ed-18fc-4407-b298-b1c9e04fadbf 3ca5702070c454197e98fc2a0cc0a6fb {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor"} -C3N-03796.WXS.N C3N-03796 GBM WXS blood_normal CPT0285170002 CPT0285170002.WholeExome.RP-1303.bam 21275282524 BAM aligned CPTAC3 98c74117-697c-4f57-a461-30992c6f2d94 bd6742acc427ba0e41e07f371ca81cf6 {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03796.WXS.N.hg38 C3N-03796 GBM WXS blood_normal CPT0285170002 108e1690-f144-4cef-a077-4bf4a30f3205_wxs_gdc_realn.bam 29516421065 BAM harmonized CPTAC3 c9b469ca-78ae-4955-b0cc-678779308d56 787b2447afb07824da0db7b8f64ac30f {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal"} -C3N-03796.WXS.T C3N-03796 GBM WXS tumor CPT0285160006 CPT0285160006.WholeExome.RP-1303.bam 20614985474 BAM aligned CPTAC3 d58e49fd-4ac5-4873-a836-b161a9ba3847 ea5fcf1ee04819c2f7adc099589facc0 {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor"} -C3N-03796.WXS.T.hg38 C3N-03796 GBM WXS tumor CPT0285160006 a34a1b81-a986-4402-a383-1bc5816a0e7e_wxs_gdc_realn.bam 28580878405 BAM harmonized CPTAC3 afc3e47c-e82c-4335-a2da-fbf630370f1c acecf56f801b60b92d0cdd860cdf5dfe {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor"} -C3N-03797.MethArray.Green.T C3N-03797 GBM Methylation_Array tumor CPT0285180007 204367470127_R02C01_Grn.idat 13677892 IDAT Green NA CPTAC3 2ce08812-ff06-4a1f-958d-652569e29da1 d695e3e3ba532865b1a2178a66d55072 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor"} -C3N-03797.MethArray.Red.T C3N-03797 GBM Methylation_Array tumor CPT0285180007 204367470127_R02C01_Red.idat 13677892 IDAT Red NA CPTAC3 95850a31-5aff-402d-bbf2-dc2477ef5d54 5736191af39a7966368b996ce6130960 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor"} -C3N-03797.miRNA-Seq.S20_L001_R1.T C3N-03797 GBM miRNA-Seq tumor CPT0285180013 200403_UNC31-K00269_0274_AHCF7GBBXY_TATAAT_S20_L001_R1_001.unaln.bam 232799984 BAM S20_L001_R1 unaligned CPTAC3 83d7e3cc-9300-442b-8d38-4359db921f46 a0e1bbf76c3a11bf8c58a26939b0c577 {"aliquot_tag": "ALQ_ccd2bbc6", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03797.miRNA-Seq.T.hg38 C3N-03797 GBM miRNA-Seq tumor CPT0285180013 bb234d6a-efd6-4e21-ac76-757818f99f98_mirnaseq_gdc_realn.bam 251406345 BAM harmonized CPTAC3 24ac0596-02b4-4e6f-be96-aca82d40294f 9d09f3c2af288eebb19b1b710cf2f713 {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor"} -C3N-03797.RNA-Seq.chimeric.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.chimeric.gdc_realn.bam 23194323 BAM chimeric harmonized CPTAC3 baf59b82-2cd1-40d7-ad73-4de9e29c5496 c076f80477c479626b52ac37da973afe {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor"} -C3N-03797.RNA-Seq.genomic.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.genomic.gdc_realn.bam 5976909642 BAM genomic harmonized CPTAC3 52b60043-0b24-4968-989d-27507c80dee5 860f3e34809cf73e762c43a5e624b420 {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor"} -C3N-03797.RNA-Seq.S4_L004_R1.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R1_001.fastq.gz 2749145746 FASTQ S4_L004_R1 unaligned CPTAC3 ed5077a5-706a-4d83-a70f-6ec809c30895 d368f649f1a0eaf81a5e439a3ac25d08 {"aliquot_tag": "ALQ_ccd2bbc6", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03797.RNA-Seq.S4_L004_R2.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R2_001.fastq.gz 3139697205 FASTQ S4_L004_R2 unaligned CPTAC3 4e0d0413-eaf2-4b81-9784-5f28d36b9eb3 73746e532f724f0f9cf7042b01af74a4 {"aliquot_tag": "ALQ_ccd2bbc6", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03797.RNA-Seq.transcriptome.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.transcriptome.gdc_realn.bam 6630470859 BAM transcriptome harmonized CPTAC3 70896e31-3dc7-4512-bba7-8399a0f76b5f b8449876395680e501a8984699806c98 {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor"} -C3N-03797.WGS.N C3N-03797 GBM WGS blood_normal CPT0285210002 CPT0285210002.WholeGenome.RP-2158.bam 35420074575 BAM aligned CPTAC3 c55e1798-2951-4cf7-abe0-790e9cb25eeb 9eb84ab8cbb2de729d29a4e3634be507 {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal"} -C3N-03797.WGS.N.hg38 C3N-03797 GBM WGS blood_normal CPT0285210002 966c6951-4f60-4deb-8ffe-9c5954afab8e_wgs_gdc_realn.bam 109141152803 BAM harmonized CPTAC3 c8df50e5-603b-4afa-987d-53514939e122 c0ecff19fd3602fa2b85e5c976b2ee1d {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal"} -C3N-03797.WGS.T C3N-03797 GBM WGS tumor CPT0285180007 CPT0285180007.WholeGenome.RP-2158.bam 22181936172 BAM aligned CPTAC3 496997c1-269b-4d43-9b29-26a24935dc5e 5d4c9b29feecffd081bfc429a5fad227 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor"} -C3N-03797.WGS.T.hg38 C3N-03797 GBM WGS tumor CPT0285180007 422a6465-56ff-4265-bb86-43cf4b882e46_wgs_gdc_realn.bam 65793765773 BAM harmonized CPTAC3 9ef14794-ec5b-4756-b14e-78e0a5b5f791 4738c9b04a1da07c9de51922668aa191 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor"} -C3N-03797.WXS.N C3N-03797 GBM WXS blood_normal CPT0285210002 CPT0285210002.WholeExome.RP-1303.bam 27620467859 BAM aligned CPTAC3 22d5c16f-aa32-42b0-bb46-b17b6a5d1d0f 205ea2d207428c31a8f76b7046847138 {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal"} -C3N-03797.WXS.N.hg38 C3N-03797 GBM WXS blood_normal CPT0285210002 966c6951-4f60-4deb-8ffe-9c5954afab8e_wxs_gdc_realn.bam 36770309194 BAM harmonized CPTAC3 d6247145-875d-4914-adf0-8b436ca75f7a 90634ae9fd856047bc5ef27111e64cb5 {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal"} -C3N-03797.WXS.T C3N-03797 GBM WXS tumor CPT0285180007 CPT0285180007.WholeExome.RP-1303.bam 19212444149 BAM aligned CPTAC3 185a06c7-ad16-4f79-9c1c-199ba99f7bcb 6b978ad5c155ed0b3b50f5c0098ed955 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor"} -C3N-03797.WXS.T.hg38 C3N-03797 GBM WXS tumor CPT0285180007 422a6465-56ff-4265-bb86-43cf4b882e46_wxs_gdc_realn.bam 27735760494 BAM harmonized CPTAC3 e8e6d27b-1138-4d47-a6f5-2a6035dcb281 c8a3a023eddc7d93cffd062545c5a902 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor"} -C3N-03800.MethArray.Green.T C3N-03800 GBM Methylation_Array tumor CPT0285220006 204372030011_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 72234503-3f55-4224-8a74-f4552cd4a8ea a3dd5f308a98e0cb92114e9d1c4f203e {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor"} -C3N-03800.MethArray.Red.T C3N-03800 GBM Methylation_Array tumor CPT0285220006 204372030011_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 e909c3bc-d014-4596-aa0a-ee0c815a6aaa 4dbb7606fed65e267b928ba47f2a7dac {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor"} -C3N-03800.miRNA-Seq.S10_L001_R1.T C3N-03800 GBM miRNA-Seq tumor CPT0285220009 200403_UNC31-K00269_0274_AHCF7GBBXY_CATGGC_S10_L001_R1_001.unaln.bam 227672680 BAM S10_L001_R1 unaligned CPTAC3 91e5c405-fb73-4322-b077-c2ee020debeb a4eb3caf4804ee66eb18af1ad5721209 {"aliquot_tag": "ALQ_f9380996", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03800.miRNA-Seq.T.hg38 C3N-03800 GBM miRNA-Seq tumor CPT0285220009 e4d4f4aa-b06c-4b4c-b6ec-49b28f16ad90_mirnaseq_gdc_realn.bam 249300125 BAM harmonized CPTAC3 62cde963-7d9c-42c2-a937-4aa15ca5eb2c 36b8e4dcda888ee9e79d71d8af75c43e {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor"} -C3N-03800.RNA-Seq.chimeric.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.chimeric.gdc_realn.bam 22689799 BAM chimeric harmonized CPTAC3 e4a56981-fa1b-4bae-8a50-e1feb1e14882 53e8b0a6fcc1a6e04140c348d6dd7dea {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor"} -C3N-03800.RNA-Seq.genomic.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.genomic.gdc_realn.bam 7196064905 BAM genomic harmonized CPTAC3 3f4a7b13-2e41-41a4-98f5-0d7d927c063e 03b4647fccd17ca1d7a3a13ee089846a {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor"} -C3N-03800.RNA-Seq.S26_L007_R1.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ S26_L007_R1 unaligned CPTAC3 a6980cb7-4d87-452d-ace8-f2419ef4d665 e5a36974625fcaa1574073eaadcef995 {"aliquot_tag": "ALQ_f9380996", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03800.RNA-Seq.S26_L007_R2.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ S26_L007_R2 unaligned CPTAC3 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 9a8d15f812faccb1b08f3b0d29e38b05 {"aliquot_tag": "ALQ_f9380996", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03800.RNA-Seq.transcriptome.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.transcriptome.gdc_realn.bam 10619622715 BAM transcriptome harmonized CPTAC3 378f7baa-58da-4c0f-867f-d8b969590e53 2ce0b5f48e970b15cd5e2b3eeeeab7ba {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor"} -C3N-03800.WGS.N C3N-03800 GBM WGS blood_normal CPT0285250002 CPT0285250002.WholeGenome.RP-2158.bam 25301880952 BAM aligned CPTAC3 bc71a97b-75d5-48b8-a5e2-a91bf65f43df 7f673a599cb0ffd0a0f13c2bd045c2b5 {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03800.WGS.N.hg38 C3N-03800 GBM WGS blood_normal CPT0285250002 74161594-9926-4852-9bef-076363ce5266_wgs_gdc_realn.bam 75210206981 BAM harmonized CPTAC3 c6e99476-96a8-4730-89ef-026f274e9488 ff8463a5b7fe6934eba67313c65dfbfe {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03800.WGS.T C3N-03800 GBM WGS tumor CPT0285220006 CPT0285220006.WholeGenome.RP-2158.bam 26028547154 BAM aligned CPTAC3 c7aec4a6-89a7-4e53-a246-d7c5fe230c7f c70782de695d9fb2803d8c4a55154d3e {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor"} -C3N-03800.WGS.T.hg38 C3N-03800 GBM WGS tumor CPT0285220006 27ccdf5d-88bc-4b87-be27-161ef297a99d_wgs_gdc_realn.bam 77812358866 BAM harmonized CPTAC3 24e3c427-04e9-489a-bbf6-4015af0f9693 18291a119b44daf422c02d4a144708ee {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor"} -C3N-03800.WXS.N C3N-03800 GBM WXS blood_normal CPT0285250002 CPT0285250002.WholeExome.RP-1303.bam 32100575262 BAM aligned CPTAC3 eb18f6f1-7305-4017-baa1-befeb8540b17 a42f8eed89642a8da59c86379d8542c2 {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03800.WXS.N.hg38 C3N-03800 GBM WXS blood_normal CPT0285250002 74161594-9926-4852-9bef-076363ce5266_wxs_gdc_realn.bam 43605032937 BAM harmonized CPTAC3 ca9914cc-5a12-4203-9c17-2de3a52076c9 3c278c076d42f5ad6f1844955d612d98 {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal"} -C3N-03800.WXS.T C3N-03800 GBM WXS tumor CPT0285220006 CPT0285220006.WholeExome.RP-1303.bam 24942224435 BAM aligned CPTAC3 21a8209e-d06c-4f45-a068-364e6a2215e4 5ccfbea5d3b36ac197316b86796fbf29 {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor"} -C3N-03800.WXS.T.hg38 C3N-03800 GBM WXS tumor CPT0285220006 27ccdf5d-88bc-4b87-be27-161ef297a99d_wxs_gdc_realn.bam 35179857229 BAM harmonized CPTAC3 b91c3e29-9d7c-4b06-b11c-4766adffd8b0 a15d9eff51df7a9c36ce01d0da376fca {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor"} -C3N-03802.MethArray.Green.T C3N-03802 GBM Methylation_Array tumor CPT0285260006 204930630109_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 16acf3b2-3ca2-4d6c-9706-8bdac855ba41 5bed79c52ea0b76cff3f59eefde08350 {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor"} -C3N-03802.MethArray.Red.T C3N-03802 GBM Methylation_Array tumor CPT0285260006 204930630109_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa78e33a-ded8-4ded-b582-0fc9c1d06c8e 1fafe1e362094bfa98f8b09dc9955aeb {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor"} -C3N-03802.miRNA-Seq.S11_L001_R1.T C3N-03802 GBM miRNA-Seq tumor CPT0285260009 200403_UNC31-K00269_0274_AHCF7GBBXY_CATTTT_S11_L001_R1_001.unaln.bam 268580490 BAM S11_L001_R1 unaligned CPTAC3 f7d03e56-e8df-4d26-a669-966b95205b69 ed841d0243324dd55ef11873eaf967bd {"aliquot_tag": "ALQ_cb8af56", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03802.miRNA-Seq.T.hg38 C3N-03802 GBM miRNA-Seq tumor CPT0285260009 39665888-ab29-4c21-9429-f4ad8cca7352_mirnaseq_gdc_realn.bam 301143625 BAM harmonized CPTAC3 a46ceaa3-5238-4715-a632-3cb7851204df 84b32c58146c4b38cd1c48a28c2eb4a8 {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor"} -C3N-03802.RNA-Seq.chimeric.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.chimeric.gdc_realn.bam 29810577 BAM chimeric harmonized CPTAC3 822847f2-37f9-400a-b5ad-218c891e5ca8 1f4eb372646e7b9fbafaddf7ad5ad1d7 {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor"} -C3N-03802.RNA-Seq.genomic.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.genomic.gdc_realn.bam 8279487166 BAM genomic harmonized CPTAC3 374499cd-c493-431e-83b8-10bfbf72d51b 6547876e98d54fd6c7fe274d35f0e84a {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor"} -C3N-03802.RNA-Seq.S27_L007_R1.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ S27_L007_R1 unaligned CPTAC3 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 b0a7c76277d6adc6cb0ec59607e40ee6 {"aliquot_tag": "ALQ_cb8af56", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03802.RNA-Seq.S27_L007_R2.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ S27_L007_R2 unaligned CPTAC3 f86f26d6-0c6b-4120-b71f-4fd632f2ec9c 46cbf58d39d0711362c538637932909c {"aliquot_tag": "ALQ_cb8af56", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03802.RNA-Seq.transcriptome.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.transcriptome.gdc_realn.bam 10436169930 BAM transcriptome harmonized CPTAC3 50c8eae9-7e4e-4ada-b4dd-e7bf9892dffc 7eacdfa284f9b177ada6824f4b3edd73 {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor"} -C3N-03802.WGS.N C3N-03802 GBM WGS blood_normal CPT0280960002 CPT0280960002.WholeGenome.RP-2158.bam 24435679576 BAM aligned CPTAC3 34fbd34a-ba89-4557-a705-0ced6d0cb40d 28a44f5f957c7a011ddf6e7a9bfbe06e {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03802.WGS.N.hg38 C3N-03802 GBM WGS blood_normal CPT0280960002 21f596c1-4a26-44b2-8c1b-4697d7884d6f_wgs_gdc_realn.bam 70976473049 BAM harmonized CPTAC3 d5ac4339-e870-47cf-99c4-4c305dfbcae8 59a26ed57e48b264f26e2ad6976d4c9a {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03802.WGS.T C3N-03802 GBM WGS tumor CPT0285260006 CPT0285260006.WholeGenome.RP-2158.bam 31983690940 BAM aligned CPTAC3 a04948ca-045f-407f-9740-559e4f672f82 053041f7537d16320cc9ed9fb935300a {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor"} -C3N-03802.WGS.T.hg38 C3N-03802 GBM WGS tumor CPT0285260006 dbd9368c-c526-4f91-b575-85678ca920d4_wgs_gdc_realn.bam 98847773464 BAM harmonized CPTAC3 14a6db1a-bd53-439a-9fe3-850628f370de 7b46d2004f77d6ae3e0e9be46991e5bf {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor"} -C3N-03802.WXS.N C3N-03802 GBM WXS blood_normal CPT0280960002 CPT0280960002.WholeExome.RP-1303.bam 31107793425 BAM aligned CPTAC3 eaf57764-4a59-4b7c-b752-6b47d9dadb10 9706a9de8a82dfd0e8dbe291e0e33920 {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03802.WXS.N.hg38 C3N-03802 GBM WXS blood_normal CPT0280960002 21f596c1-4a26-44b2-8c1b-4697d7884d6f_wxs_gdc_realn.bam 42162146910 BAM harmonized CPTAC3 873a455c-8270-4254-8033-313e94158f63 22df330d54a5b79a6d1bfa87edf037e8 {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03802.WXS.T C3N-03802 GBM WXS tumor CPT0285260006 CPT0285260006.WholeExome.RP-1303.bam 28080869995 BAM aligned CPTAC3 db174c32-951d-458b-9230-6b8ed2d3283a c0ccd28d7a185f933dff4279a0de8a31 {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor"} -C3N-03802.WXS.T.hg38 C3N-03802 GBM WXS tumor CPT0285260006 dbd9368c-c526-4f91-b575-85678ca920d4_wxs_gdc_realn.bam 37570077761 BAM harmonized CPTAC3 f485b85f-858c-41c8-99a5-02d2f889894b b55f72b63cb36a352e6b5acaa48809db {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor"} -C3N-03810.MethArray.Green.T C3N-03810 GBM Methylation_Array tumor CPT0285300006 204930640083_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 d1b249f4-8b50-4d7b-824c-46fd2dabf739 fbaa953dde4d524e8051036c4208bbc3 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor"} -C3N-03810.MethArray.Red.T C3N-03810 GBM Methylation_Array tumor CPT0285300006 204930640083_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 ef992acc-6d0f-41bf-8739-44298c4c9a7d 88dd0cc6b840c65c919f15d42c60682e {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor"} -C3N-03810.miRNA-Seq.S12_L001_R1.T C3N-03810 GBM miRNA-Seq tumor CPT0285300009 200403_UNC31-K00269_0274_AHCF7GBBXY_CCAACA_S12_L001_R1_001.unaln.bam 232539673 BAM S12_L001_R1 unaligned CPTAC3 5c539aec-8211-452a-9eac-e95a863225db b4eec004d08918547749156c9a8ee684 {"aliquot_tag": "ALQ_48a48953", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03810.miRNA-Seq.T.hg38 C3N-03810 GBM miRNA-Seq tumor CPT0285300009 cfb72048-a42f-4dab-aa46-f58122a9257a_mirnaseq_gdc_realn.bam 257461966 BAM harmonized CPTAC3 bdf12979-375d-45de-bb02-d9cc3c93ddb4 494c7ddf751236c7db354a7ea386e14f {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor"} -C3N-03810.RNA-Seq.chimeric.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.chimeric.gdc_realn.bam 23161039 BAM chimeric harmonized CPTAC3 e366aafd-72ef-4a07-9af1-12ff5e30b954 f59b7750dc3e99fde6052199dfeef226 {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor"} -C3N-03810.RNA-Seq.genomic.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.genomic.gdc_realn.bam 6547827409 BAM genomic harmonized CPTAC3 06d81ee4-b619-4231-940f-ffc784ccda41 0a2e2c4bfbc5cb1f265f15314851aac7 {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor"} -C3N-03810.RNA-Seq.S28_L007_R1.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ S28_L007_R1 unaligned CPTAC3 8fbe432e-3582-4d23-ae52-931b334f2112 7ce943248cb178104c31b5b6fcbc5b44 {"aliquot_tag": "ALQ_48a48953", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03810.RNA-Seq.S28_L007_R2.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ S28_L007_R2 unaligned CPTAC3 c9bb314d-81a3-4b4a-b3c8-935f7db8d048 ca24c94d1f399d3a988e280690b67547 {"aliquot_tag": "ALQ_48a48953", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03810.RNA-Seq.transcriptome.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.transcriptome.gdc_realn.bam 9021127186 BAM transcriptome harmonized CPTAC3 b144fc02-d13a-4abb-979e-948e36635791 0b4dd8c3495691d9a94c36d1e38ae259 {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor"} -C3N-03810.WGS.N C3N-03810 GBM WGS blood_normal CPT0285330002 CPT0285330002.WholeGenome.RP-2158.bam 23111061366 BAM aligned CPTAC3 2e2c679f-7b26-4015-b244-45267471f2e2 583735d6fb9f3ff6ae6165c48a6602c9 {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03810.WGS.N.hg38 C3N-03810 GBM WGS blood_normal CPT0285330002 ca49ed01-ced5-4674-95c9-b77361506dbc_wgs_gdc_realn.bam 70217504692 BAM harmonized CPTAC3 4f081684-661c-4114-87e5-3ea5943244f4 7e406f1fc1cb5552f9b4498f62a6398b {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03810.WGS.T C3N-03810 GBM WGS tumor CPT0285300006 CPT0285300006.WholeGenome.RP-2158.bam 28905896477 BAM aligned CPTAC3 1ea41311-ec81-4ccb-b505-ffe1817637e1 c07f6d3bd529760c08cb9cbd4a035ebf {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor"} -C3N-03810.WGS.T.hg38 C3N-03810 GBM WGS tumor CPT0285300006 cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wgs_gdc_realn.bam 86575296711 BAM harmonized CPTAC3 7a8a0945-b68b-403f-8883-e04140b8e788 a007efe13045aee595530d1a2350e2f6 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor"} -C3N-03810.WXS.N C3N-03810 GBM WXS blood_normal CPT0285330002 CPT0285330002.WholeExome.RP-1303.bam 28716333027 BAM aligned CPTAC3 e44cb506-57f9-4b12-be9a-cc049696d254 5b6fdc2f477f57c0016e64bfbed4465d {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03810.WXS.N.hg38 C3N-03810 GBM WXS blood_normal CPT0285330002 ca49ed01-ced5-4674-95c9-b77361506dbc_wxs_gdc_realn.bam 39782441736 BAM harmonized CPTAC3 b4157794-616f-4717-8a72-45784b5619d4 4f79c1e5e5ca8f516e4cefb8eef7a234 {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal"} -C3N-03810.WXS.T C3N-03810 GBM WXS tumor CPT0285300006 CPT0285300006.WholeExome.RP-1303.bam 23403510103 BAM aligned CPTAC3 62c4ac3a-788e-453e-b514-8fae7927b604 423545bc151a6ef1f87f746ffa26c7f9 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor"} -C3N-03810.WXS.T.hg38 C3N-03810 GBM WXS tumor CPT0285300006 cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wxs_gdc_realn.bam 30576782514 BAM harmonized CPTAC3 2077b46c-6a73-4349-a5a8-a189fba4a1d0 1ccc0b99470fb25a5aca0de646866908 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor"} -C3N-03837.MethArray.Green.T C3N-03837 HNSCC Methylation_Array tumor CPT0236620006 203273200080_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e4207f9a-79ad-4905-9b36-cbb3d342847f 6d092b141aa0ac6c61b6482220df4ca3 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor"} -C3N-03837.MethArray.Red.T C3N-03837 HNSCC Methylation_Array tumor CPT0236620006 203273200080_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 45533b2d-e36e-48e5-b3e6-c035c8232c51 4e9ab1724cb30f0fc28bcd08c9c27f61 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor"} -C3N-03837.miRNA-Seq.A.hg38 C3N-03837 HNSCC miRNA-Seq tissue_normal CPT0236640006 d6191851-c4dd-4b0a-8f9a-fb2a1176dbc3_mirnaseq_gdc_realn.bam 242919448 BAM harmonized CPTAC3 cfbb1a61-1b75-41cd-8745-0ecdeb7bdf66 edce6f249524cdfe214c1e8c5fcaf356 {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03837.miRNA-Seq.S2_L005_R1.A C3N-03837 HNSCC miRNA-Seq tissue_normal CPT0236640006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L005_R1_001.unaln.bam 210722534 BAM S2_L005_R1 unaligned CPTAC3 d1a6eed9-4c6b-471f-9c20-77962f62aca3 5e5081a71a04e48a0d5b702915cb50ff {"aliquot_tag": "ALQ_11d4a57a", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03837.RNA-Seq.chimeric.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.chimeric.gdc_realn.bam 58766115 BAM chimeric harmonized CPTAC3 218e278c-66c7-4a43-b421-f1116cc24137 e180282dd5bad51dac43a33cc2edad0b {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03837.RNA-Seq.chimeric.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.chimeric.gdc_realn.bam 221615835 BAM chimeric harmonized CPTAC3 468d3841-946a-4302-9c82-537f4ec88399 c50d6319690902cb8f13a9879ec2d872 {"aliquot_tag": "ALQ_e2b4d4b", "gdc_sample_type": "Primary Tumor"} -C3N-03837.RNA-Seq.genomic.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.genomic.gdc_realn.bam 11344314559 BAM genomic harmonized CPTAC3 aaf2c3d0-bce4-4f1b-9bc0-b8950227b1a7 ad376b5df59b757eaf2f928e58388948 {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03837.RNA-Seq.genomic.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.genomic.gdc_realn.bam 7001857355 BAM genomic harmonized CPTAC3 01400e6b-5364-4188-8ebc-7a75b952c36e 1927d5e7840ae877e8e079dc48a725ad {"aliquot_tag": "ALQ_e2b4d4b", "gdc_sample_type": "Primary Tumor"} -C3N-03837.RNA-Seq.S13_L003_R1.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R1_001.fastq.gz 5232135560 FASTQ S13_L003_R1 unaligned CPTAC3 7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c 3e370611f896ea9b7723ad642dbbd469 {"aliquot_tag": "ALQ_11d4a57a", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03837.RNA-Seq.S13_L003_R2.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R2_001.fastq.gz 5292215494 FASTQ S13_L003_R2 unaligned CPTAC3 19e36b22-9eed-4846-9fe7-ae1df2d2183d 919be9289329a92dab6df8ecab00c5b0 {"aliquot_tag": "ALQ_11d4a57a", "sample": "S13", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03837.RNA-Seq.S5_L002_R1.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3292865459 FASTQ S5_L002_R1 unaligned CPTAC3 91df6fd0-bb82-42e3-a4cc-94acc3a2dac5 6c91ebcf6e7f386fa56f4f48762a9bd6 {"aliquot_tag": "ALQ_e2b4d4b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03837.RNA-Seq.S5_L002_R2.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3723913348 FASTQ S5_L002_R2 unaligned CPTAC3 f0b82c84-e1cf-4703-9a71-9996f4c7149a 7c42532119f09023f1135aca231b35ff {"aliquot_tag": "ALQ_e2b4d4b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03837.RNA-Seq.transcriptome.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.transcriptome.gdc_realn.bam 14336780033 BAM transcriptome harmonized CPTAC3 c5562a00-2d71-4bd2-bd03-db41dcdadaae 751ba0fc56b19c629fbe6bc2b75d018c {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03837.RNA-Seq.transcriptome.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.transcriptome.gdc_realn.bam 9891991058 BAM transcriptome harmonized CPTAC3 e7c38702-2613-4880-b1f5-25b6bbd65cd8 4863b279863177112ef0cb24ad963fe9 {"aliquot_tag": "ALQ_e2b4d4b", "gdc_sample_type": "Primary Tumor"} -C3N-03837.WGS.N C3N-03837 HNSCC WGS blood_normal CPT0236680002 CPT0236680002.WholeGenome.RP-1303.bam 82569751510 BAM aligned CPTAC3 97880c85-4669-44f5-88e6-4a3300504cdc a43973858f6cc59228e7a92be6c052af {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal"} -C3N-03837.WGS.N.hg38 C3N-03837 HNSCC WGS blood_normal CPT0236680002 21c4c00d-3d39-4548-94de-36c1c2a6b931_wgs_gdc_realn.bam 119892775142 BAM harmonized CPTAC3 6cdb8054-2db6-430b-a978-7837cc0f271c e20d376114185ac124ec4745eb33799a {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal"} -C3N-03837.WGS.T C3N-03837 HNSCC WGS tumor CPT0236620006 CPT0236620006.WholeGenome.RP-1303.bam 61657173077 BAM aligned CPTAC3 4deee67e-9d6f-420e-8f25-74f7a4b34cb2 9899dda86899d8076f19afe8f90af169 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor"} -C3N-03837.WGS.T.hg38 C3N-03837 HNSCC WGS tumor CPT0236620006 662fe48b-3316-48a4-b9ff-478577986b86_wgs_gdc_realn.bam 92269320265 BAM harmonized CPTAC3 430c387b-4885-45bb-9e9e-d03b4100d0f7 36b15b929c9e9fa635ede50a1899f068 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor"} -C3N-03837.WXS.N C3N-03837 HNSCC WXS blood_normal CPT0236680002 CPT0236680002.WholeExome.RP-1303.bam 52424461182 BAM aligned CPTAC3 5fc224eb-d439-44e6-be55-aea8058b39f1 a619f1cd318b66479c2262b3aa7ea7bf {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal"} -C3N-03837.WXS.N.hg38 C3N-03837 HNSCC WXS blood_normal CPT0236680002 21c4c00d-3d39-4548-94de-36c1c2a6b931_wxs_gdc_realn.bam 72564979290 BAM harmonized CPTAC3 79f45856-ff0f-4b5c-a361-082cd8784e7b f4d3399351a3bac457e0f7f7627b4e5c {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal"} -C3N-03837.WXS.T C3N-03837 HNSCC WXS tumor CPT0236620006 CPT0236620006.WholeExome.RP-1303.bam 21190224503 BAM aligned CPTAC3 e898fe06-fc24-4764-a9e3-c2cea467a015 99f6794d07fb7d050a41c2251828b696 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor"} -C3N-03837.WXS.T.hg38 C3N-03837 HNSCC WXS tumor CPT0236620006 662fe48b-3316-48a4-b9ff-478577986b86_wxs_gdc_realn.bam 28807362529 BAM harmonized CPTAC3 b5a161b9-1470-45e8-ab61-fbd69447087b 19e369300f81bab493381b26c4604655 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor"} -C3N-03839.MethArray.Green.T C3N-03839 PDA Methylation_Array tumor CPT0236700008 203561620043_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 193eedc0-51ff-4dd1-924d-24b65ca78862 fe573acf9e7f5f7dcb3e0c93e513bf3e {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor"} -C3N-03839.MethArray.Red.T C3N-03839 PDA Methylation_Array tumor CPT0236700008 203561620043_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 0f1b37f4-451c-4cdd-a219-bd7c2eb1641e 5ac43474cccacdb240f0edb03c9d92b5 {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor"} -C3N-03839.miRNA-Seq.S7_L004_R1.T C3N-03839 PDA miRNA-Seq tumor CPT0236700011 190712_UNC32-K00270_0192_BH7HL3BBXY_CACGAT_S7_L004_R1_001.unaln.bam 284421155 BAM S7_L004_R1 unaligned CPTAC3 db8dc575-3905-4064-bc66-5513b9faa360 dc6492aa8f419453593f6190aa213a7a {"aliquot_tag": "ALQ_a87774fd", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03839.miRNA-Seq.T.hg38 C3N-03839 PDA miRNA-Seq tumor CPT0236700011 5d3c4a12-3ee3-47ec-a6ca-9ed6e4184bdf_mirnaseq_gdc_realn.bam 321090712 BAM harmonized CPTAC3 b99c875c-d45d-4f35-9e62-d80c5144a65a 7950ac5eee326acf758d3ee5ce74005e {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor"} -C3N-03839.RNA-Seq.chimeric.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.chimeric.gdc_realn.bam 32431027 BAM chimeric harmonized CPTAC3 a4a24fb0-4ed0-43ee-8d03-2cab311f7a40 3b544b5466532acd9cd03c45fb386eae {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor"} -C3N-03839.RNA-Seq.genomic.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.genomic.gdc_realn.bam 8203912249 BAM genomic harmonized CPTAC3 fa27d52d-79e7-474a-a0ae-418af31657ec 445dadd14cbf4b90e3d266fd519ef99c {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor"} -C3N-03839.RNA-Seq.S7_L002_R1.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3838586486 FASTQ S7_L002_R1 unaligned CPTAC3 56fe9c85-1d66-4676-a4ae-b27a67bdb36b 2835213af45a1577aefba16d18ff8c41 {"aliquot_tag": "ALQ_a87774fd", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03839.RNA-Seq.S7_L002_R2.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4280739338 FASTQ S7_L002_R2 unaligned CPTAC3 bf2313fd-9f78-485d-be5a-58bd48fe3f4f 40b110a6ffc186ad33dcf1cff91812cc {"aliquot_tag": "ALQ_a87774fd", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03839.RNA-Seq.transcriptome.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.transcriptome.gdc_realn.bam 11222943471 BAM transcriptome harmonized CPTAC3 721ec1e9-8e81-4efd-9c9b-28d133ac56bf 9d866fec361b326168565d14da4803c6 {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor"} -C3N-03839.WGS.N C3N-03839 PDA WGS blood_normal CPT0236770002 CPT0236770002.WholeGenome.RP-1303.bam 64401178895 BAM aligned CPTAC3 5cff73b6-f957-4eff-b739-4ee785dda967 475e52c48e9bce5e3de288d42ec478e2 {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal"} -C3N-03839.WGS.N.hg38 C3N-03839 PDA WGS blood_normal CPT0236770002 1039286f-054d-4248-9d88-ea57a0168b1a_wgs_gdc_realn.bam 95852254845 BAM harmonized CPTAC3 50e458bc-fb18-4bb9-b0bc-cc0770458159 e1a484f37157edc2801157cdb184f1b1 {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal"} -C3N-03839.WGS.T C3N-03839 PDA WGS tumor CPT0236700008 CPT0236700008.WholeGenome.RP-1303.bam 139511227543 BAM aligned CPTAC3 5711adc2-1fcb-4ba7-90fc-2cc94784d99d 4abf8e24b864f349acc7c5268fbdaaa3 {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor"} -C3N-03839.WGS.T.hg38 C3N-03839 PDA WGS tumor CPT0236700008 fad48c67-400c-44db-a445-b0f3ccbb0a81_wgs_gdc_realn.bam 202433902976 BAM harmonized CPTAC3 30fd26a4-5025-4b1d-9be6-c2208245632c e004a2f0340c6add79b0acd0eece4a7d {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor"} -C3N-03839.WXS.N C3N-03839 PDA WXS blood_normal CPT0236770002 CPT0236770002.WholeExome.RP-1303.bam 29207806148 BAM aligned CPTAC3 fce9b8e4-da7d-4536-ac32-eab980b95a60 55972f298eb28abc600ef96eb741d44a {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal"} -C3N-03839.WXS.N.hg38 C3N-03839 PDA WXS blood_normal CPT0236770002 1039286f-054d-4248-9d88-ea57a0168b1a_wxs_gdc_realn.bam 40713284186 BAM harmonized CPTAC3 714e1407-3f82-466a-86bf-85ecdf3aae45 47b4f088892b7a51e4fea4aa1524e284 {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal"} -C3N-03839.WXS.T C3N-03839 PDA WXS tumor CPT0236700008 CPT0236700008.WholeExome.RP-1303.bam 54711804365 BAM aligned CPTAC3 372bbdfe-401e-4756-9c48-d626cfb024fc d9881ca6c2f505f6c905239b82bedbba {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor"} -C3N-03839.WXS.T.hg38 C3N-03839 PDA WXS tumor CPT0236700008 fad48c67-400c-44db-a445-b0f3ccbb0a81_wxs_gdc_realn.bam 75028007644 BAM harmonized CPTAC3 f68a8961-0ff4-41c4-b102-a75b4f05e33f 53b5da5fd09fc8132ff30596ceca1c98 {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor"} -C3N-03840.MethArray.Green.A C3N-03840 PDA Methylation_Array tissue_normal CPT0236800010 203561620080_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 130b2c72-10fe-4b42-93ab-9ebe7a4c2f70 e99d2cdeb4fd0ddae04b11ead4c0d808 {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03840.MethArray.Green.T C3N-03840 PDA Methylation_Array tumor CPT0236780008 203561450099_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 21050512-822f-4f8a-8914-d211d3bc04e8 0005075260f8ffc0b6f3a69a7193dac8 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor"} -C3N-03840.MethArray.Red.A C3N-03840 PDA Methylation_Array tissue_normal CPT0236800010 203561620080_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 f8773038-e974-46f2-9bc3-286a6e7ce815 655410f876d4b48e50eb48363b98dddc {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03840.MethArray.Red.T C3N-03840 PDA Methylation_Array tumor CPT0236780008 203561450099_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 e4d0bd37-3c2a-4725-bff6-09b6cf855b88 e5f0090095627fe3b002f2f648e31de4 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor"} -C3N-03840.miRNA-Seq.S48_L004_R1.T C3N-03840 PDA miRNA-Seq tumor CPT0236780011 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L004_R1_001.unaln.bam 219431151 BAM S48_L004_R1 unaligned CPTAC3 4fb76ba7-e571-4f96-bddd-8117d3ebb992 61f65883be7f3e968a8b503f0dd45f3d {"aliquot_tag": "ALQ_98073f3c", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03840.miRNA-Seq.T.hg38 C3N-03840 PDA miRNA-Seq tumor CPT0236780011 1651b695-c146-475c-b6fc-eeca00702fdd_mirnaseq_gdc_realn.bam 250347903 BAM harmonized CPTAC3 0f65ab84-519f-4b16-8618-f8e60ee5f319 655f1c2688fc5bb8c7b3e9d89e982ce5 {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor"} -C3N-03840.RNA-Seq.chimeric.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.chimeric.gdc_realn.bam 27361691 BAM chimeric harmonized CPTAC3 9753439b-1f63-4552-8e9c-97f1f9028745 24b253aec813f5e0966e1e5f537fd845 {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor"} -C3N-03840.RNA-Seq.genomic.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.genomic.gdc_realn.bam 7067452295 BAM genomic harmonized CPTAC3 87116042-5481-48d1-b2c7-e467bc95a332 8c1a6fabd6407ae8ec2686295518b1d8 {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor"} -C3N-03840.RNA-Seq.S19_L006_R1.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R1_001.fastq.gz 3427969856 FASTQ S19_L006_R1 unaligned CPTAC3 0f99208f-7c99-4c60-9700-e2f270009f77 ebd484d66dedde60c84bffce2580d11a {"aliquot_tag": "ALQ_98073f3c", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03840.RNA-Seq.S19_L006_R2.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R2_001.fastq.gz 3695037407 FASTQ S19_L006_R2 unaligned CPTAC3 08696071-b690-42cc-97dd-ea0d068a034b 76ab7a6835614ef09c6db515f7076463 {"aliquot_tag": "ALQ_98073f3c", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03840.RNA-Seq.transcriptome.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.transcriptome.gdc_realn.bam 9810008498 BAM transcriptome harmonized CPTAC3 b61d0590-7642-4766-b18d-0fad143de133 ab952a2686607489a432d397b215598e {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor"} -C3N-03840.WGS.N C3N-03840 PDA WGS blood_normal CPT0236840002 CPT0236840002.WholeGenome.RP-1303.bam 66186275812 BAM aligned CPTAC3 c16f0ba9-ca9d-4db4-baa5-ad30fe6317e2 4e49d57e72df91a71574c49280673ad6 {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal"} -C3N-03840.WGS.N.hg38 C3N-03840 PDA WGS blood_normal CPT0236840002 dbcb1072-3b41-4a75-9ba1-267a7b85db21_wgs_gdc_realn.bam 97670561709 BAM harmonized CPTAC3 9a21e1aa-6072-40a7-9ecd-453e7ba0ff63 d2a7f74aefb86497c5b9c8016c7683b8 {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal"} -C3N-03840.WGS.T C3N-03840 PDA WGS tumor CPT0236780008 CPT0236780008.WholeGenome.RP-1303.bam 142968625732 BAM aligned CPTAC3 71239b96-5393-4d07-b2a1-add87e4d7d7b fdc0abee7f0ff03ef36ed0a79eefe88e {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor"} -C3N-03840.WGS.T.hg38 C3N-03840 PDA WGS tumor CPT0236780008 c0d6a979-077e-4b15-b478-8ab5444bf3d6_wgs_gdc_realn.bam 211413009553 BAM harmonized CPTAC3 ab3c777a-1f53-4860-ae9d-6c8cd0492743 d95cf166d4c08e9c75d842fbd8ff4001 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor"} -C3N-03840.WXS.A C3N-03840 PDA WXS tissue_normal CPT0236800010 CPT0236800010.WholeExome.RP-1303.bam 17235991261 BAM aligned CPTAC3 ba99be57-21e6-419d-83e7-767ca7f5f4af 2acf7018c9e0253df3188e7ab9b6783a {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03840.WXS.A.hg38 C3N-03840 PDA WXS tissue_normal CPT0236800010 9ee6dcfb-43cc-4cbe-b4d6-c72b206dec75_wxs_gdc_realn.bam 23408923012 BAM harmonized CPTAC3 7d6c412b-73b8-4886-be18-4cbee4c0f121 358105d5e1af47805a97e4fd66a22dc8 {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03840.WXS.N C3N-03840 PDA WXS blood_normal CPT0236840002 CPT0236840002.WholeExome.RP-1303.bam 21239249459 BAM aligned CPTAC3 02dc970a-c169-435f-a2fc-e2c37cfee7e5 793be3af724f022865f87724eb718fac {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal"} -C3N-03840.WXS.N.hg38 C3N-03840 PDA WXS blood_normal CPT0236840002 dbcb1072-3b41-4a75-9ba1-267a7b85db21_wxs_gdc_realn.bam 28968066458 BAM harmonized CPTAC3 fb512afa-f14a-4c2f-9f6c-a76af97a2237 d26a00eba74167f40576d42a1df7ea50 {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal"} -C3N-03840.WXS.T C3N-03840 PDA WXS tumor CPT0236780008 CPT0236780008.WholeExome.RP-1303.bam 47135846378 BAM aligned CPTAC3 141a7b97-69ea-46db-9c93-45b61dd36cb3 e876e7e7ae30c41ead740cb07f703274 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor"} -C3N-03840.WXS.T.hg38 C3N-03840 PDA WXS tumor CPT0236780008 c0d6a979-077e-4b15-b478-8ab5444bf3d6_wxs_gdc_realn.bam 65813966191 BAM harmonized CPTAC3 894038d4-3aeb-422d-8e7a-6502f4dcecae 0a3caafb81aa1fc6e6a905d133b2451e {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor"} -C3N-03841.MethArray.Green.A C3N-03841 HNSCC Methylation_Array tissue_normal CPT0236870009 203219650071_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e87b2f10-f4ad-4736-af93-806b656a1ecc bb54a4452de09377cb53c7be428d35ca {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.MethArray.Green.T C3N-03841 HNSCC Methylation_Array tumor CPT0236850007 203273200155_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4dad86f9-83e2-459b-8bcc-d7ead4b9dc2a 42c128d028cdd47b55c973eb4f25e6af {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor"} -C3N-03841.MethArray.Red.A C3N-03841 HNSCC Methylation_Array tissue_normal CPT0236870009 203219650071_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 e4143e4f-53c5-49d1-b6aa-3cf8dc72910f 2a2cbd31f5e60c6289fd3da3c6de4df5 {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.MethArray.Red.T C3N-03841 HNSCC Methylation_Array tumor CPT0236850007 203273200155_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 0f19a7d2-2cb0-43b9-9419-d9983c92b818 df020f547ccd292df4628609edd84ffc {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor"} -C3N-03841.miRNA-Seq.A.hg38 C3N-03841 HNSCC miRNA-Seq tissue_normal CPT0236870006 42f95d4d-0feb-4fbe-bb55-14d3cbb0d686_mirnaseq_gdc_realn.bam 242850677 BAM harmonized CPTAC3 f0a22005-201a-4440-9a4c-bffaea3f826b e11b8d69f7479ba6316ea204b6164392 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.miRNA-Seq.S34_L004_R1.T C3N-03841 HNSCC miRNA-Seq tumor CPT0236850010 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L004_R1_001.unaln.bam 242601608 BAM S34_L004_R1 unaligned CPTAC3 deccc5ad-9699-44a5-a47b-01e9288ed5cc 3c9525930dd66ca6844a471b1de207d8 {"aliquot_tag": "ALQ_e6c679ce", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03841.miRNA-Seq.S3_L005_R1.A C3N-03841 HNSCC miRNA-Seq tissue_normal CPT0236870006 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L005_R1_001.unaln.bam 215176154 BAM S3_L005_R1 unaligned CPTAC3 d59b787b-3928-4dc0-a206-cf74cc871e0d 80442d4ce2620ad765bc3016d53bf293 {"aliquot_tag": "ALQ_6c7ebeda", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.miRNA-Seq.T.hg38 C3N-03841 HNSCC miRNA-Seq tumor CPT0236850010 c8e7981f-9836-4e92-bd9f-cea01726c9ae_mirnaseq_gdc_realn.bam 270310534 BAM harmonized CPTAC3 2c262bab-0260-4f33-847f-547978b8e9e5 be8494678a0b4000477ebaf7590ac0e6 {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor"} -C3N-03841.RNA-Seq.chimeric.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.chimeric.gdc_realn.bam 43529745 BAM chimeric harmonized CPTAC3 b7b8a0e6-b372-419e-af4a-aace2e1b76b3 b789ca368d4043794017efa44dc07e27 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.RNA-Seq.chimeric.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.chimeric.gdc_realn.bam 208487017 BAM chimeric harmonized CPTAC3 999d6285-ed76-403e-9e03-9c1f84a77b6f 186d3d30cc13a43949390e5482d49d35 {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor"} -C3N-03841.RNA-Seq.genomic.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.genomic.gdc_realn.bam 7783288816 BAM genomic harmonized CPTAC3 bd7cca37-b5d3-4e4b-9662-772ffef3ecd6 fd7411ced6632295c9d10be9bb63e879 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.RNA-Seq.genomic.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.genomic.gdc_realn.bam 7702449243 BAM genomic harmonized CPTAC3 0240e958-1701-4c93-bf5c-cb30247c36de 697815d414574159ed48fe17090d47df {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor"} -C3N-03841.RNA-Seq.S15_L003_R1.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R1_001.fastq.gz 3550970262 FASTQ S15_L003_R1 unaligned CPTAC3 10c05c73-0d70-475e-bac0-5dcf5bf85d17 0b52bebe65785a8e3180fb9d54c474bf {"aliquot_tag": "ALQ_6c7ebeda", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.RNA-Seq.S15_L003_R2.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R2_001.fastq.gz 3947291636 FASTQ S15_L003_R2 unaligned CPTAC3 da96e246-ab71-40a5-b74e-9866c2337b60 14415981bbb4fffe522db298a24f807d {"aliquot_tag": "ALQ_6c7ebeda", "sample": "S15", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.RNA-Seq.S6_L002_R1.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 3549375907 FASTQ S6_L002_R1 unaligned CPTAC3 83a78534-e8d3-4666-bea6-4e3b400853bf a9f424a6ed6dbf6ffeda183bdd6422ef {"aliquot_tag": "ALQ_e6c679ce", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03841.RNA-Seq.S6_L002_R2.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3973248182 FASTQ S6_L002_R2 unaligned CPTAC3 1cb6ed3c-8679-4136-92fb-c67fb5769e88 e6cf5fcbc775d90ac1775b47729aa213 {"aliquot_tag": "ALQ_e6c679ce", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03841.RNA-Seq.transcriptome.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.transcriptome.gdc_realn.bam 10637905808 BAM transcriptome harmonized CPTAC3 4e36c269-6112-4763-aafd-7c5d647033ae 0e176cb22f0daf1f83555d404d301902 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.RNA-Seq.transcriptome.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.transcriptome.gdc_realn.bam 9604896690 BAM transcriptome harmonized CPTAC3 5fc39563-d7e7-4449-a5fa-f2240198ee6c b2aeb5f0165f840e3795655d23b4419a {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor"} -C3N-03841.WGS.N C3N-03841 HNSCC WGS blood_normal CPT0236910002 CPT0236910002.WholeGenome.RP-1303.bam 73153340369 BAM aligned CPTAC3 c594ebc8-21d7-477d-a1ba-db3ea322f000 0d158c28d56b5f5938e3e9e7142ad212 {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03841.WGS.N.hg38 C3N-03841 HNSCC WGS blood_normal CPT0236910002 33799056-6d57-49ae-b723-1285c31a3dbf_wgs_gdc_realn.bam 107632541446 BAM harmonized CPTAC3 155c0d7b-51d2-46e7-8280-b0878a0a4caf 623d1dca48eea17248ae2256b17681f5 {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03841.WGS.T C3N-03841 HNSCC WGS tumor CPT0236850007 CPT0236850007.WholeGenome.RP-1303.bam 72231698399 BAM aligned CPTAC3 2b20f628-1bc4-471b-9f44-324b543006f9 7179b4f3fff6329e6a1f2f5d4d70ef9e {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor"} -C3N-03841.WGS.T.hg38 C3N-03841 HNSCC WGS tumor CPT0236850007 58fab107-27f0-4322-a1a5-b40044b7dc29_wgs_gdc_realn.bam 108837277495 BAM harmonized CPTAC3 18012290-35ae-4a1f-9647-c538c7122013 1ea024b2f6aa9fc4839a0754d4ac04b6 {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor"} -C3N-03841.WXS.A C3N-03841 HNSCC WXS tissue_normal CPT0236870009 CPT0236870009.WholeExome.RP-1303.bam 23988442033 BAM aligned CPTAC3 9c140618-460f-47d2-b943-33b8973d2274 f688f589a6b52d207fa098d0f696f6b6 {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.WXS.A.hg38 C3N-03841 HNSCC WXS tissue_normal CPT0236870009 34274c2e-10d5-4997-8754-402017a2fe85_wxs_gdc_realn.bam 33212487326 BAM harmonized CPTAC3 99d99f98-622d-4ea6-802a-87ff22f97bc7 134308077c4172e88317100ea5539276 {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03841.WXS.N C3N-03841 HNSCC WXS blood_normal CPT0236910002 CPT0236910002.WholeExome.RP-1303.bam 22332229934 BAM aligned CPTAC3 899798ad-560f-43cb-92de-5d0a48f1bd4e 87c63e9cf85919f6e0f6c3cfeb5c568c {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03841.WXS.N.hg38 C3N-03841 HNSCC WXS blood_normal CPT0236910002 33799056-6d57-49ae-b723-1285c31a3dbf_wxs_gdc_realn.bam 30253536570 BAM harmonized CPTAC3 1b4033bc-022d-421d-a5ce-fbad7e0c8b15 783663098b21980854048bb3033d4179 {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03841.WXS.T C3N-03841 HNSCC WXS tumor CPT0236850007 CPT0236850007.WholeExome.RP-1303.bam 27156241927 BAM aligned CPTAC3 c87b1f95-71be-4055-8329-1b78a58cd982 5a9ff99a180cb8eaa62830163a08d57a {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor"} -C3N-03841.WXS.T.hg38 C3N-03841 HNSCC WXS tumor CPT0236850007 58fab107-27f0-4322-a1a5-b40044b7dc29_wxs_gdc_realn.bam 37420446846 BAM harmonized CPTAC3 d6068c4c-863a-497f-a0fa-26f29d6aaf5b 1d5e4410fd29d04a91ab30b62b5ada65 {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor"} -C3N-03848.MethArray.Green.A C3N-03848 LSCC Methylation_Array tissue_normal CPT0237080009 203219650003_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6aad6312-1f05-4ef5-b63a-710ef5dd0980 23b1b244b3e61866cd011a708da59a6c {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.MethArray.Green.T C3N-03848 LSCC Methylation_Array tumor CPT0237060007 203219640172_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f1c068bb-d3be-4d37-9a82-8c3c0e39296b f5d3631a743373931fd0eefab0d16233 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor"} -C3N-03848.MethArray.Red.A C3N-03848 LSCC Methylation_Array tissue_normal CPT0237080009 203219650003_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 9c9b6d26-3166-4c9f-b7e1-c928ca79f8ed 0f785860c43ae422b2edf023dabb0e04 {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.MethArray.Red.T C3N-03848 LSCC Methylation_Array tumor CPT0237060007 203219640172_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 5d892b78-76d5-4963-9043-b861e4119556 eb17edeaef8a709a4d7f1f72a1575129 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor"} -C3N-03848.miRNA-Seq.A.hg38 C3N-03848 LSCC miRNA-Seq tissue_normal CPT0237080006 d707b158-5e12-42f9-8436-af858282724a_mirnaseq_gdc_realn.bam 221048792 BAM harmonized CPTAC3 f9c76868-72c2-4030-8ae0-fae688e1cc0f d8a64cd5c9ea58b3ec1a0d9dc1c9306d {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.miRNA-Seq.S22_L005_R1.A C3N-03848 LSCC miRNA-Seq tissue_normal CPT0237080006 190206_UNC31-K00269_0191_AH2WY5BBXY_CAACTA_S22_L005_R1_001.unaln.bam 196967861 BAM S22_L005_R1 unaligned CPTAC3 c005f987-269c-48ea-a0af-a9ac353d8da5 ccd831d0c5ec9d5fea2d116073e3d970 {"aliquot_tag": "ALQ_a40aa0d2", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.miRNA-Seq.S34_L004_R1.T C3N-03848 LSCC miRNA-Seq tumor CPT0237060010 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGTCA_S34_L004_R1_001.unaln.bam 185330419 BAM S34_L004_R1 unaligned CPTAC3 24c63ee6-19f6-4bfb-ba9b-d2f3fb3a3878 9ca0b86957dae4bc6930327182d4794a {"aliquot_tag": "ALQ_eb428ac7", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03848.miRNA-Seq.T.hg38 C3N-03848 LSCC miRNA-Seq tumor CPT0237060010 bc02b4cf-7071-4f2d-8c58-b57d8d5f6a93_mirnaseq_gdc_realn.bam 202289915 BAM harmonized CPTAC3 6f4d76e0-1e65-4084-9af5-25159cea6141 fc6480918f8cf2ee46920d8c43d78649 {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor"} -C3N-03848.RNA-Seq.chimeric.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.chimeric.gdc_realn.bam 307226795 BAM chimeric harmonized CPTAC3 33167ba4-13a7-4251-bc6d-810679cd0d3a e4c32c8319b332732487e1422fdd5629 {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.RNA-Seq.chimeric.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.chimeric.gdc_realn.bam 147531806 BAM chimeric harmonized CPTAC3 d6a10a6a-0dea-476e-8eb5-6bfaf6271c8e aec5c92921048eca2774afec265b8a9f {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor"} -C3N-03848.RNA-Seq.genomic.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.genomic.gdc_realn.bam 8345081835 BAM genomic harmonized CPTAC3 a0fe70a6-83c0-4e65-a68d-363e48568666 258703702796a2636f9ea55cd770b1f8 {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.RNA-Seq.genomic.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.genomic.gdc_realn.bam 8160515905 BAM genomic harmonized CPTAC3 b034869e-b2ce-4735-9ae5-19d9e0dc4327 69a68ade426830f3ae65da72e4747832 {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor"} -C3N-03848.RNA-Seq.S23_L006_R1.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3783211123 FASTQ S23_L006_R1 unaligned CPTAC3 de23d600-f38b-451b-a74e-3e4de1d7d127 83f27879083cd98459ad0ba44de85154 {"aliquot_tag": "ALQ_a40aa0d2", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.RNA-Seq.S23_L006_R2.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4239869487 FASTQ S23_L006_R2 unaligned CPTAC3 21d3047a-3217-4c7d-bd89-2b5473199e14 f3c4a2b838f998856e2f36c756ca5579 {"aliquot_tag": "ALQ_a40aa0d2", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.RNA-Seq.S9_L003_R1.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R1_001.fastq.gz 3588982693 FASTQ S9_L003_R1 unaligned CPTAC3 caf344ba-b89a-4c5e-8f44-e3e7699a7988 ec2ab3d87523c790d111824cc3219652 {"aliquot_tag": "ALQ_eb428ac7", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03848.RNA-Seq.S9_L003_R2.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R2_001.fastq.gz 3900758585 FASTQ S9_L003_R2 unaligned CPTAC3 ff9867f3-3c78-4a82-9870-5e942377c57a 11716e471407667e886d58c2ca643a8c {"aliquot_tag": "ALQ_eb428ac7", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03848.RNA-Seq.transcriptome.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.transcriptome.gdc_realn.bam 8269488321 BAM transcriptome harmonized CPTAC3 735224a4-2ba4-453c-aced-2ff0bdf139aa d95144b0923447176735f40919bf6a55 {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.RNA-Seq.transcriptome.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.transcriptome.gdc_realn.bam 8636811657 BAM transcriptome harmonized CPTAC3 d39b6fdf-886d-4de1-82ab-96391dce1c2b 898538bc099dab45f820afd6475240d0 {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor"} -C3N-03848.WGS.N C3N-03848 LSCC WGS blood_normal CPT0237120002 CPT0237120002.WholeGenome.RP-1303.bam 55342381377 BAM aligned CPTAC3 e61169b2-2da7-4f6e-ae92-b99bdd5382f0 1ee9fb0970de9c9fe2c0b78f260eaa6d {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03848.WGS.N.hg38 C3N-03848 LSCC WGS blood_normal CPT0237120002 0df7e1bd-c7e9-46b6-9a8a-733b0aeb8a3d_wgs_gdc_realn.bam 80844526203 BAM harmonized CPTAC3 b4a26c06-a33e-458c-8869-1a9718e31f69 2a314298b9d849802e25afbf3d0004cc {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03848.WGS.T C3N-03848 LSCC WGS tumor CPT0237060007 CPT0237060007.WholeGenome.RP-1303.bam 60683173651 BAM aligned CPTAC3 6a2e1c30-edba-439d-aaa1-5cd219a9cf6a bd73b5eac9c9e95e82f8056cc808c68f {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor"} -C3N-03848.WGS.T.hg38 C3N-03848 LSCC WGS tumor CPT0237060007 db22b708-9f28-46e1-a158-e680c16abfc9_wgs_gdc_realn.bam 89612161267 BAM harmonized CPTAC3 713b6dc0-5c8a-408c-abd8-60f7a4848da6 493c17d6845aee5ae8e885c6bae84fd4 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor"} -C3N-03848.WXS.A C3N-03848 LSCC WXS tissue_normal CPT0237080009 CPT0237080009.WholeExome.RP-1303.bam 31123801174 BAM aligned CPTAC3 11d8d35a-3fc1-439e-8278-2dc3d3f2aaac 904c1965d9b43c89a30ac5d11bc44a6a {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.WXS.A.hg38 C3N-03848 LSCC WXS tissue_normal CPT0237080009 fdb5c307-9fb3-4beb-9798-51bf1a62d7c6_wxs_gdc_realn.bam 42880193644 BAM harmonized CPTAC3 f8f5acc3-1cab-4767-93e3-dff4cc256649 e7a167ea23809651298ebc1e42e4eecf {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03848.WXS.N C3N-03848 LSCC WXS blood_normal CPT0237120002 CPT0237120002.WholeExome.RP-1303.bam 24660109461 BAM aligned CPTAC3 3257b1fa-4fb2-440c-96c4-a527bc9765ac 2baaead16b0f446a5320eb624e83d9dc {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03848.WXS.N.hg38 C3N-03848 LSCC WXS blood_normal CPT0237120002 0df7e1bd-c7e9-46b6-9a8a-733b0aeb8a3d_wxs_gdc_realn.bam 33676179556 BAM harmonized CPTAC3 5d0b27e6-ab79-441b-b517-45a1bcbdfc7d 5289dc9e4da7919a2255b7db8bbe4dc5 {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal"} -C3N-03848.WXS.T C3N-03848 LSCC WXS tumor CPT0237060007 CPT0237060007.WholeExome.RP-1303.bam 31171111955 BAM aligned CPTAC3 73d100ed-73ca-4352-9230-598360864f34 cc97fa9f3328124a9e9dd20f06f1e443 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor"} -C3N-03848.WXS.T.hg38 C3N-03848 LSCC WXS tumor CPT0237060007 db22b708-9f28-46e1-a158-e680c16abfc9_wxs_gdc_realn.bam 42955515337 BAM harmonized CPTAC3 0e575559-c2df-4394-9c04-77f9138c139b 0a29f9f866cbdc6a6bfa0dad77e577ae {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor"} -C3N-03849.MethArray.Green.A C3N-03849 HNSCC Methylation_Array tissue_normal CPT0237150009 203271740156_R02C01_Grn.idat 13676210 IDAT Green NA CPTAC3 748e422f-0857-4aaa-a9a1-9e12fda048c4 262fd7e1fe7bf9352258300d7f1ba5f3 {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.MethArray.Green.T C3N-03849 HNSCC Methylation_Array tumor CPT0237130007 203271750010_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 91925321-4b5a-4f30-83b4-524408ee45d7 ed5a6e4ba3bb5b6ff46f48d6323fd526 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor"} -C3N-03849.MethArray.Red.A C3N-03849 HNSCC Methylation_Array tissue_normal CPT0237150009 203271740156_R02C01_Red.idat 13676210 IDAT Red NA CPTAC3 8ad8b658-5401-4d07-8d94-148616426ac5 8f64bed1a4147c4b2039ded14aa69940 {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.MethArray.Red.T C3N-03849 HNSCC Methylation_Array tumor CPT0237130007 203271750010_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 0ff7afb2-a3cd-4c09-ade3-a988ec7657ab e31a3abde86599fab652db65ff58b625 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor"} -C3N-03849.miRNA-Seq.A.hg38 C3N-03849 HNSCC miRNA-Seq tissue_normal CPT0237150006 6b0dd3d5-01c1-4372-8a4c-8447e01ec4a4_mirnaseq_gdc_realn.bam 350987015 BAM harmonized CPTAC3 ef14b503-b765-4b2e-ae40-558ce1b19e05 61394c7902560df4293c71ad21a61363 {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.miRNA-Seq.S35_L004_R1.T C3N-03849 HNSCC miRNA-Seq tumor CPT0237130010 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L004_R1_001.unaln.bam 212812537 BAM S35_L004_R1 unaligned CPTAC3 81885908-71d6-4178-9844-0b960af53eda d1b3422691730cf4c8f8bc9f946cfd79 {"aliquot_tag": "ALQ_e8fed612", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03849.miRNA-Seq.S4_L005_R1.A C3N-03849 HNSCC miRNA-Seq tissue_normal CPT0237150006 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L005_R1_001.unaln.bam 313388072 BAM S4_L005_R1 unaligned CPTAC3 56aa044e-d0f9-4272-a8d4-40643da19a36 eec51364fd3a0d9213b05cc462155b18 {"aliquot_tag": "ALQ_97c6b7c6", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.miRNA-Seq.T.hg38 C3N-03849 HNSCC miRNA-Seq tumor CPT0237130010 dae74986-4350-4915-9e62-860604ac81f1_mirnaseq_gdc_realn.bam 232818892 BAM harmonized CPTAC3 dbb5f042-b814-4dc9-bc8d-1c4a17e6ec71 0ee757a4d4af70ac4de62f36c3a8beb4 {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor"} -C3N-03849.RNA-Seq.chimeric.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.chimeric.gdc_realn.bam 42250271 BAM chimeric harmonized CPTAC3 a83d2a31-9285-493f-8c8c-e57dcef53e5e 59afc138595dcf46ffbd33c3a2db159e {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.RNA-Seq.chimeric.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.chimeric.gdc_realn.bam 213785879 BAM chimeric harmonized CPTAC3 53e19a78-bbe5-418f-92b1-abccb59e5d35 46936f8a8cc36e1d91a727588d3e2dde {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor"} -C3N-03849.RNA-Seq.genomic.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.genomic.gdc_realn.bam 9031546935 BAM genomic harmonized CPTAC3 2a588b21-9c01-4f75-b05d-137750b44c79 9edb73100bbd75dcfc885d21175942a9 {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.RNA-Seq.genomic.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.genomic.gdc_realn.bam 8379285734 BAM genomic harmonized CPTAC3 4d9c5be3-cd3e-47d3-9632-8a98ff7547df e34b677370843efad45fcd0e961957d8 {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor"} -C3N-03849.RNA-Seq.S16_L003_R1.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R1_001.fastq.gz 4146821128 FASTQ S16_L003_R1 unaligned CPTAC3 5deac991-e30d-46e4-a1e2-3c542e1724c1 ab71711d7822b19be0dd8b018bf6c0ae {"aliquot_tag": "ALQ_97c6b7c6", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.RNA-Seq.S16_L003_R2.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R2_001.fastq.gz 4496258668 FASTQ S16_L003_R2 unaligned CPTAC3 dbe529ee-d8de-42b6-9706-0281444c1e06 055ec52e8ac283106ad583a1fa55b76a {"aliquot_tag": "ALQ_97c6b7c6", "sample": "S16", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.RNA-Seq.S8_L002_R1.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3824969966 FASTQ S8_L002_R1 unaligned CPTAC3 9d031428-fca4-4514-a8ed-12e452afb4d3 5abe4f9e2f04887131e22aacc3e6db0a {"aliquot_tag": "ALQ_e8fed612", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03849.RNA-Seq.S8_L002_R2.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4423454652 FASTQ S8_L002_R2 unaligned CPTAC3 2f645ebf-aff3-4e1e-a0cf-46cc3430bc65 09b5796dd65a19fa6b1e1a8fd6dc5ca7 {"aliquot_tag": "ALQ_e8fed612", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03849.RNA-Seq.transcriptome.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.transcriptome.gdc_realn.bam 11948208244 BAM transcriptome harmonized CPTAC3 8362d3fe-2435-4be0-b702-7b88c75bfea9 51acfde8e54a2ea75cf1c670c9b1549e {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.RNA-Seq.transcriptome.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.transcriptome.gdc_realn.bam 10671266014 BAM transcriptome harmonized CPTAC3 adcace2f-32ad-4f6a-aab8-c4bb9f12649d 2dcec49c2603166caaaa00a142b40f95 {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor"} -C3N-03849.WGS.N C3N-03849 HNSCC WGS blood_normal CPT0237190002 CPT0237190002.WholeGenome.RP-1303.bam 66545871731 BAM aligned CPTAC3 f69cc680-c556-48e1-9cf9-290c437ee504 cf3a9c488a5af4bbf2d44ef3d9cccc56 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal"} -C3N-03849.WGS.N.hg38 C3N-03849 HNSCC WGS blood_normal CPT0237190002 42a540a5-7464-4132-81f2-fe99cf58a436_wgs_gdc_realn.bam 98292420883 BAM harmonized CPTAC3 9e7c44a1-8516-4b2b-86d5-43069de82b91 8bdbd33f8a3ccddb92d80557bd5e17b3 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal"} -C3N-03849.WGS.T C3N-03849 HNSCC WGS tumor CPT0237130007 CPT0237130007.WholeGenome.RP-1303.bam 65537002477 BAM aligned CPTAC3 25d16b23-28ba-4740-82c9-29e8e2bd4ddc 08366fdd2ea992bbbbd1db9073e35de5 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor"} -C3N-03849.WGS.T.hg38 C3N-03849 HNSCC WGS tumor CPT0237130007 58d317f1-0935-498a-8d5f-b16499308ab4_wgs_gdc_realn.bam 96230027435 BAM harmonized CPTAC3 0d4ba94c-58a3-4af7-8b4a-fe8435186789 679477ee0f3c40fe9edbca5ff188e902 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor"} -C3N-03849.WXS.A C3N-03849 HNSCC WXS tissue_normal CPT0237150009 CPT0237150009.WholeExome.RP-1303.bam 39399338313 BAM aligned CPTAC3 b8618a25-6307-49b6-a732-e0d599208061 d0e1127ddd79065e256c8ccd1384de6f {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.WXS.A.hg38 C3N-03849 HNSCC WXS tissue_normal CPT0237150009 de14e426-d604-400f-bacb-e5f583fe684b_wxs_gdc_realn.bam 54998307848 BAM harmonized CPTAC3 47bbea88-e5fd-4fe4-a4a8-117416d6c07a 2919697dd9925f3c96651f64100f14d3 {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03849.WXS.N C3N-03849 HNSCC WXS blood_normal CPT0237190002 CPT0237190002.WholeExome.RP-1303.bam 25276415156 BAM aligned CPTAC3 b74c72b3-db46-4c87-83c6-ca1cbe9e3bf7 3db4ee4e5a94e6ca64216abc776890c6 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal"} -C3N-03849.WXS.N.hg38 C3N-03849 HNSCC WXS blood_normal CPT0237190002 42a540a5-7464-4132-81f2-fe99cf58a436_wxs_gdc_realn.bam 33829969585 BAM harmonized CPTAC3 3fc0e634-aead-4cca-8c4a-fbc57321efc2 20638b35bafbd3b01aa57349d3484223 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal"} -C3N-03849.WXS.T C3N-03849 HNSCC WXS tumor CPT0237130007 CPT0237130007.WholeExome.RP-1303.bam 23225826309 BAM aligned CPTAC3 fa63e93d-da4d-4890-b663-67e47d3a4f05 ad6ba37e69a0a1387466dbfe73ddd27b {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor"} -C3N-03849.WXS.T.hg38 C3N-03849 HNSCC WXS tumor CPT0237130007 58d317f1-0935-498a-8d5f-b16499308ab4_wxs_gdc_realn.bam 32296730964 BAM harmonized CPTAC3 130912fb-80ca-42cd-bd76-284e3c843ea1 a848fc57204e62b68dcdb46dc67e5eab {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor"} -C3N-03851.MethArray.Green.T C3N-03851 LSCC Methylation_Array tumor CPT0237200007 203219650174_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3ae9766d-9ff0-4a0e-a174-9e340997fa39 5e820c310866c7d8d9c8e2ff7f683c06 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor"} -C3N-03851.MethArray.Red.T C3N-03851 LSCC Methylation_Array tumor CPT0237200007 203219650174_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 04bce6ab-3e79-4b38-b5c2-1dd685703994 68d564a54699453ab5e9039234418fc9 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor"} -C3N-03851.miRNA-Seq.A.hg38 C3N-03851 LSCC miRNA-Seq tissue_normal CPT0237210006 112bb6d8-81f4-43e4-9cd0-7a9b3ef2d0d0_mirnaseq_gdc_realn.bam 283297453 BAM harmonized CPTAC3 eccf87eb-c335-459e-a3ad-348687c16239 b0fbbb4034abf75c102178f7f95ee350 {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03851.miRNA-Seq.S158_L007_R1.T C3N-03851 LSCC miRNA-Seq tumor CPT0237200010 190828_UNC32-K00270_0200_BH7GVJBBXY_GATCAG_S158_L007_R1_001.unaln.bam 288179780 BAM S158_L007_R1 unaligned CPTAC3 c63e9d20-5f5a-470d-be5d-f4e23c8888d4 9415edff010ec225220115bc0b8ccea2 {"aliquot_tag": "ALQ_29cade6c", "sample": "S158", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03851.miRNA-Seq.S21_L005_R1.A C3N-03851 LSCC miRNA-Seq tissue_normal CPT0237210006 190206_UNC31-K00269_0191_AH2WY5BBXY_CACCGG_S21_L005_R1_001.unaln.bam 255744738 BAM S21_L005_R1 unaligned CPTAC3 6578a154-95bd-48c1-8235-ec3b8744ac11 faaf9b5da004c81078d29892378624e8 {"aliquot_tag": "ALQ_e4d263a8", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03851.miRNA-Seq.T.hg38 C3N-03851 LSCC miRNA-Seq tumor CPT0237200010 71a324d9-03cf-44ec-b32f-3ea5c211370c_mirnaseq_gdc_realn.bam 312783754 BAM harmonized CPTAC3 2cb77047-c3f4-45f7-984a-4311a819ec57 fa4f3ffb392cbccefa5ae3051f014441 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor"} -C3N-03851.RNA-Seq.chimeric.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.chimeric.gdc_realn.bam 296163808 BAM chimeric harmonized CPTAC3 87af9b8e-e26b-43e7-9079-a268d51758c3 90f1de4780efdd0c1aba7ac41d910239 {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03851.RNA-Seq.chimeric.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.chimeric.gdc_realn.bam 127426417 BAM chimeric harmonized CPTAC3 5add4b32-8cb2-4f28-a713-a8babe82eef3 f3a40b715fb8faf61e9ad38453592816 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor"} -C3N-03851.RNA-Seq.genomic.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.genomic.gdc_realn.bam 9077719472 BAM genomic harmonized CPTAC3 f7773471-3f8b-40df-8f56-b9a1c92320ad 24b923bf12dd011ad314e8e235d162c7 {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03851.RNA-Seq.genomic.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.genomic.gdc_realn.bam 8105698646 BAM genomic harmonized CPTAC3 4d0ad8f7-c23d-4148-b11e-46fcdf5a8221 ff529b8819fccc7497cf48a8832b0a56 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor"} -C3N-03851.RNA-Seq.S22_L006_R1.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 4216508872 FASTQ S22_L006_R1 unaligned CPTAC3 be70d456-8e6f-446b-b4cd-0c017301a18a dcadbbc087c9981d3ad4837124bc667d {"aliquot_tag": "ALQ_e4d263a8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03851.RNA-Seq.S22_L006_R2.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 4724113570 FASTQ S22_L006_R2 unaligned CPTAC3 f46106ca-b640-4caa-ae6a-633020d2cb97 a746a4d23ca1e2906fbd85fcedf4f88f {"aliquot_tag": "ALQ_e4d263a8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03851.RNA-Seq.S3_L001_R1.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3646899211 FASTQ S3_L001_R1 unaligned CPTAC3 093e9037-e025-4003-aef6-63b023192ac8 1ce8676996b6da9b43676688a5a68b3f {"aliquot_tag": "ALQ_29cade6c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03851.RNA-Seq.S3_L001_R2.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R2_001.fastq.gz 4079259403 FASTQ S3_L001_R2 unaligned CPTAC3 c2a93566-f7c3-40ae-acfc-8a164752cfe2 6ac5bc12cbf691e975d3c21d5c4e9c0b {"aliquot_tag": "ALQ_29cade6c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03851.RNA-Seq.transcriptome.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.transcriptome.gdc_realn.bam 10985805435 BAM transcriptome harmonized CPTAC3 e62befa0-cb04-4d7c-8e6a-d724ead1e935 291f8b9a8b30d3612c704651eb08fa8f {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03851.RNA-Seq.transcriptome.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.transcriptome.gdc_realn.bam 9746416279 BAM transcriptome harmonized CPTAC3 5876bc9a-c278-4615-92f7-5177b0a8ed9f 4b34958eb9a0bec9ba0ce56ac26ed680 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor"} -C3N-03851.WGS.N C3N-03851 LSCC WGS blood_normal CPT0237260002 CPT0237260002.WholeGenome.RP-1303.bam 61953955529 BAM aligned CPTAC3 f0dd829c-f73f-49b4-a623-e64d63653083 4bf5611b8b9aab1717329fbd4dbf6dcc {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03851.WGS.N.hg38 C3N-03851 LSCC WGS blood_normal CPT0237260002 07144067-5157-4e9c-87e6-ae39734624f8_wgs_gdc_realn.bam 89830831900 BAM harmonized CPTAC3 36b8ae23-85fa-4963-9019-c14b2f668b7a 143854598b1d594c32efcf234f6b1167 {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03851.WGS.T C3N-03851 LSCC WGS tumor CPT0237200007 CPT0237200007.WholeGenome.RP-1303.bam 61427999147 BAM aligned CPTAC3 38811e7a-8acc-441a-aa45-01d2c01df137 5fcce163be39b9c153da1157e13fe480 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor"} -C3N-03851.WGS.T.hg38 C3N-03851 LSCC WGS tumor CPT0237200007 3b453860-03bc-4bb3-a378-8bc60b00762e_wgs_gdc_realn.bam 88782837411 BAM harmonized CPTAC3 defc1632-1616-47aa-a6a3-2b94efaca2e2 941570b00d8bab26dbc6165e04c8b08f {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor"} -C3N-03851.WXS.N C3N-03851 LSCC WXS blood_normal CPT0237260002 CPT0237260002.WholeExome.RP-1303.bam 28212537532 BAM aligned CPTAC3 f316a876-0e18-4d7b-b605-2eece99fceba 4438d663c1d2591ab0d9eea6e42c3e81 {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03851.WXS.N.hg38 C3N-03851 LSCC WXS blood_normal CPT0237260002 07144067-5157-4e9c-87e6-ae39734624f8_wxs_gdc_realn.bam 38018586011 BAM harmonized CPTAC3 dda7b1f9-a55e-43ba-b623-90c93682d34b d222019848d1252b63ea6a97304c5e99 {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal"} -C3N-03851.WXS.T C3N-03851 LSCC WXS tumor CPT0237200007 CPT0237200007.WholeExome.RP-1303.bam 24661546855 BAM aligned CPTAC3 37e6014b-acec-4eb5-aefd-8d57d6eb5a87 c0de748033466498dfc00e9531f73901 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor"} -C3N-03851.WXS.T.hg38 C3N-03851 LSCC WXS tumor CPT0237200007 3b453860-03bc-4bb3-a378-8bc60b00762e_wxs_gdc_realn.bam 33645444082 BAM harmonized CPTAC3 de2864f8-6816-4c21-a229-66b0b339ee38 034b82629dcb47ffbd71f5a7dba0aae6 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor"} -C3N-03853.MethArray.Green.T C3N-03853 PDA Methylation_Array tumor CPT0237270011 203561620132_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 2d64f287-3064-45af-a9fb-8b17cea07869 5689a426688b4251175b2415cace8dab {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor"} -C3N-03853.MethArray.Red.T C3N-03853 PDA Methylation_Array tumor CPT0237270011 203561620132_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 5ff4bca8-690b-47a4-8fa2-89b15d537170 05483f62e1607651c93797f14319d682 {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor"} -C3N-03853.miRNA-Seq.S4_L004_R1.T C3N-03853 PDA miRNA-Seq tumor CPT0237270008 190712_UNC32-K00270_0192_BH7HL3BBXY_CAAAAG_S4_L004_R1_001.unaln.bam 175892230 BAM S4_L004_R1 unaligned CPTAC3 5e030674-df69-46bf-bb40-0625bd852b7d 43bc750d3985f221a93e72863c8242e0 {"aliquot_tag": "ALQ_8c2abb0f", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03853.miRNA-Seq.T.hg38 C3N-03853 PDA miRNA-Seq tumor CPT0237270008 b4aa1028-91f8-4791-a666-711da8f22bf7_mirnaseq_gdc_realn.bam 196908814 BAM harmonized CPTAC3 3e20566f-3938-45e7-8677-69b23abf5ca0 33a7a1cb8ff9a4238f7ee15469a95d34 {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor"} -C3N-03853.RNA-Seq.chimeric.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.chimeric.gdc_realn.bam 25056443 BAM chimeric harmonized CPTAC3 afd6bd07-959c-490f-b1ee-836ff541667c e326cd40b6b556d0403e18303232f83a {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor"} -C3N-03853.RNA-Seq.genomic.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.genomic.gdc_realn.bam 6329248607 BAM genomic harmonized CPTAC3 f6bfea9a-236c-4c86-b4a9-fb81dd46ae47 a0079b1e27028eab65c04cab7d2c1697 {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor"} -C3N-03853.RNA-Seq.S5_L002_R1.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R1_001.fastq.gz 2916729014 FASTQ S5_L002_R1 unaligned CPTAC3 54598abb-f151-46c9-bbcd-83996abfbff9 f4d648826df99e7e8f4e7aa531a1edce {"aliquot_tag": "ALQ_8c2abb0f", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03853.RNA-Seq.S5_L002_R2.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R2_001.fastq.gz 3187026718 FASTQ S5_L002_R2 unaligned CPTAC3 8fa2a977-6346-4929-b0ac-7dec7a2c6c85 404132c89161bfb036c9d190446c7118 {"aliquot_tag": "ALQ_8c2abb0f", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03853.RNA-Seq.transcriptome.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.transcriptome.gdc_realn.bam 7684355976 BAM transcriptome harmonized CPTAC3 41f69ac7-ca2c-4e9b-ad7a-4f3ea62d6858 acde885d90d39bd02c23f3c304cdee57 {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor"} -C3N-03853.WGS.N C3N-03853 PDA WGS blood_normal CPT0237330002 CPT0237330002.WholeGenome.RP-1303.bam 68719328743 BAM aligned CPTAC3 23766041-2920-4634-ba6e-d757023e6a31 eb65d55161445c515e49b5b3bbfadbfc {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal"} -C3N-03853.WGS.N.hg38 C3N-03853 PDA WGS blood_normal CPT0237330002 d9f1ee6b-0467-460b-b46d-ccd105ebb600_wgs_gdc_realn.bam 100567856315 BAM harmonized CPTAC3 f303165c-97a2-41a3-9c6c-b8f1478dab75 7a029d03aab90f8b3d9b5f776478f8d3 {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal"} -C3N-03853.WGS.T C3N-03853 PDA WGS tumor CPT0237270011 CPT0237270011.WholeGenome.RP-1303.bam 133390326110 BAM aligned CPTAC3 65a9897f-012d-40dd-b129-cd94ad80cabe 24fb203daec20f4d57248cd384fb082f {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor"} -C3N-03853.WGS.T.hg38 C3N-03853 PDA WGS tumor CPT0237270011 03484d73-88a2-4b7d-974a-cca90dc31ce4_wgs_gdc_realn.bam 197407346114 BAM harmonized CPTAC3 adef148b-80f0-45d9-be9a-4740003847b2 8c6ca68de35b1e73b12858dd59b93d67 {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor"} -C3N-03853.WXS.N C3N-03853 PDA WXS blood_normal CPT0237330002 CPT0237330002.WholeExome.RP-1303.bam 28086820754 BAM aligned CPTAC3 6e3382cc-85c3-4226-b781-1f40e7609d2c 1c2b84192c5eacdcbd416f0087293572 {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal"} -C3N-03853.WXS.N.hg38 C3N-03853 PDA WXS blood_normal CPT0237330002 d9f1ee6b-0467-460b-b46d-ccd105ebb600_wxs_gdc_realn.bam 38423127232 BAM harmonized CPTAC3 431eebd6-1422-4516-ac4c-78eb6cf7c7f3 5bc79d30d15a7f1d13f159b77e93ce01 {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal"} -C3N-03853.WXS.T C3N-03853 PDA WXS tumor CPT0237270011 CPT0237270011.WholeExome.RP-1303.bam 49355811561 BAM aligned CPTAC3 171c77fc-b033-4478-a5f4-b294c8557a68 691d3b424370aa15f3da4709809c2cfb {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor"} -C3N-03853.WXS.T.hg38 C3N-03853 PDA WXS tumor CPT0237270011 03484d73-88a2-4b7d-974a-cca90dc31ce4_wxs_gdc_realn.bam 68278818410 BAM harmonized CPTAC3 0efb60fe-b2d8-479f-a6f7-82f8eae7c452 9fe822451b3f9d8f7fe5ddcd3fba845c {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor"} -C3N-03875.MethArray.Green.A C3N-03875 LSCC Methylation_Array tissue_normal CPT0237430009 203219650065_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 146313fd-66c1-44d6-886f-4922aff12360 ad5f2c7d5cb257474b5bb80250b3f84b {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.MethArray.Green.T C3N-03875 LSCC Methylation_Array tumor CPT0237410007 203219670122_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 057d2bba-0876-4843-b5b9-8f382311a7a5 9ed448eaa39ac1338fda313630d6531d {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor"} -C3N-03875.MethArray.Red.A C3N-03875 LSCC Methylation_Array tissue_normal CPT0237430009 203219650065_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 8691dc46-c6f6-4378-a341-81df5f8bcf17 1afef193660a5f1a8b32c407da151bce {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.MethArray.Red.T C3N-03875 LSCC Methylation_Array tumor CPT0237410007 203219670122_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 009501c4-edac-4405-82f9-0b48a5a4436b 481b0dfe490dc9e69f16ca5fe929ef26 {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor"} -C3N-03875.miRNA-Seq.A.hg38 C3N-03875 LSCC miRNA-Seq tissue_normal CPT0237430006 083201ab-8898-4bc0-bd4b-734949c69745_mirnaseq_gdc_realn.bam 230465921 BAM harmonized CPTAC3 9fa0c889-0aaa-490d-b7fa-948a8e052e4a 33d1a0d7c8b81d1d98d3b121816cda0b {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.miRNA-Seq.S20_L005_R1.A C3N-03875 LSCC miRNA-Seq tissue_normal CPT0237430006 190206_UNC31-K00269_0191_AH2WY5BBXY_CACGAT_S20_L005_R1_001.unaln.bam 202110685 BAM S20_L005_R1 unaligned CPTAC3 94558c17-b113-4db9-8ba4-648d06aa6c85 e8f15038e6d291d158ebeedd052aeb37 {"aliquot_tag": "ALQ_484bd3d5", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.miRNA-Seq.S39_L004_R1.T C3N-03875 LSCC miRNA-Seq tumor CPT0237410010 190206_UNC31-K00269_0191_AH2WY5BBXY_TAGCTT_S39_L004_R1_001.unaln.bam 197395968 BAM S39_L004_R1 unaligned CPTAC3 cd2fb3db-f4b0-4a76-8b58-d5c8e6f95c4e 0171d93ebb5425cce6754bfd75d51a90 {"aliquot_tag": "ALQ_c2f314c1", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03875.miRNA-Seq.T.hg38 C3N-03875 LSCC miRNA-Seq tumor CPT0237410010 2f6cde2e-83c6-4a23-98cb-3c29d4ce27ee_mirnaseq_gdc_realn.bam 216958901 BAM harmonized CPTAC3 fed436ae-daff-4304-a460-5ef302d83c4e c190e0d67c4724a5bee7cf88d161c1e1 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor"} -C3N-03875.RNA-Seq.chimeric.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.chimeric.gdc_realn.bam 417408545 BAM chimeric harmonized CPTAC3 6ca93cf0-6f28-4436-9913-e50d70ed93dc c16500c06b9144058715f8903f3101e5 {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.RNA-Seq.chimeric.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.chimeric.gdc_realn.bam 239199837 BAM chimeric harmonized CPTAC3 a7e6a9b5-00b9-42a9-8c40-de6d82919b3b 5d31d2adeeab4302f11aeb13ac99d3e9 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor"} -C3N-03875.RNA-Seq.genomic.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.genomic.gdc_realn.bam 9183303739 BAM genomic harmonized CPTAC3 0dbec24c-7ac2-4b1d-876d-1db550ddcd19 0df69260248ecfd6b8252781fbb2d994 {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.RNA-Seq.genomic.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.genomic.gdc_realn.bam 9416029934 BAM genomic harmonized CPTAC3 05d88198-13f3-4124-8f16-b2cfbb10d216 a7cafe8a6fc668baf89e7488ff945c89 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor"} -C3N-03875.RNA-Seq.S21_L006_R1.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R1_001.fastq.gz 4159579810 FASTQ S21_L006_R1 unaligned CPTAC3 8d00e1c4-c513-48f6-a19e-d87365f1f746 e7646f1d784ef3be98106f2fc6674957 {"aliquot_tag": "ALQ_484bd3d5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.RNA-Seq.S21_L006_R2.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R2_001.fastq.gz 4677409539 FASTQ S21_L006_R2 unaligned CPTAC3 2f211c5a-93f2-47e7-b29a-ba350245cabc 58e5c7877d1ab858ad983f02ddb2bb48 {"aliquot_tag": "ALQ_484bd3d5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.RNA-Seq.S2_L001_R1.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 4410463611 FASTQ S2_L001_R1 unaligned CPTAC3 85b882c0-75f5-48e0-9181-5bb320ef4a70 ef6ef1f182d8533bccde4517e245cc24 {"aliquot_tag": "ALQ_c2f314c1", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03875.RNA-Seq.S2_L001_R2.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4913417551 FASTQ S2_L001_R2 unaligned CPTAC3 872b4b83-35e7-482c-8f05-c100b5a70785 d73eeef3a1ebe6bc358c4e29b31d5a6f {"aliquot_tag": "ALQ_c2f314c1", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03875.RNA-Seq.transcriptome.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.transcriptome.gdc_realn.bam 9152823260 BAM transcriptome harmonized CPTAC3 92b68f53-f87b-428a-9560-e42a2168cee1 c47616025b39151eab62809ef96802bd {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.RNA-Seq.transcriptome.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.transcriptome.gdc_realn.bam 11736816056 BAM transcriptome harmonized CPTAC3 a62cab78-755e-48d4-8b59-288d71b4db3f 48a6f11eaadfeedce5cba9eb86a7b860 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor"} -C3N-03875.WGS.N C3N-03875 LSCC WGS blood_normal CPT0237470002 CPT0237470002.WholeGenome.RP-1303.bam 54198714257 BAM aligned CPTAC3 221b0d1a-3964-414d-9323-a8b2dfbbef96 a444d93357229b723195e00a86f2972b {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03875.WGS.N.hg38 C3N-03875 LSCC WGS blood_normal CPT0237470002 d29bdcdf-f368-41d2-91e9-5ea9f96224e0_wgs_gdc_realn.bam 78864452471 BAM harmonized CPTAC3 934b36e1-cf74-4fd1-b311-110d4eafc244 4afdc92263eb9c3b142233ce7f0ea262 {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03875.WGS.T C3N-03875 LSCC WGS tumor CPT0237410007 CPT0237410007.WholeGenome.RP-1303.bam 52869203339 BAM aligned CPTAC3 659ffb6a-4e16-42ac-a75f-357bcc755c33 9541fadb2393d20cf6275e10db0cf6ab {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor"} -C3N-03875.WGS.T.hg38 C3N-03875 LSCC WGS tumor CPT0237410007 c144c286-a208-4b0e-8a31-5b40c4c61906_wgs_gdc_realn.bam 77202884244 BAM harmonized CPTAC3 1c14972e-0168-4d6f-83c3-b4ab309992c1 b68616c3f642123959c66de43dd9d0ec {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor"} -C3N-03875.WXS.A C3N-03875 LSCC WXS tissue_normal CPT0237430009 CPT0237430009.WholeExome.RP-1303.bam 30222473466 BAM aligned CPTAC3 74731122-784d-48f8-b3b8-04acaeaa4314 def2295444fecd4cf4db61e403c7e9af {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.WXS.A.hg38 C3N-03875 LSCC WXS tissue_normal CPT0237430009 9bb4da0c-e6a3-4c1b-b6a8-448f102a04e7_wxs_gdc_realn.bam 41731459795 BAM harmonized CPTAC3 1057914a-4aaf-48c7-a947-807e128b942c a13f7cea883a5fed021ac8301e6ae539 {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03875.WXS.N C3N-03875 LSCC WXS blood_normal CPT0237470002 CPT0237470002.WholeExome.RP-1303.bam 21724722804 BAM aligned CPTAC3 58199a8f-7811-4c14-9193-a0fbae3649d7 32cc9370a07d442132c004f2125c89f2 {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03875.WXS.N.hg38 C3N-03875 LSCC WXS blood_normal CPT0237470002 d29bdcdf-f368-41d2-91e9-5ea9f96224e0_wxs_gdc_realn.bam 29717035682 BAM harmonized CPTAC3 e9286352-bd5a-47c3-b3f9-7648e6429e07 4bd8e895a424715337bc637065b9e203 {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal"} -C3N-03875.WXS.T C3N-03875 LSCC WXS tumor CPT0237410007 CPT0237410007.WholeExome.RP-1303.bam 28854354841 BAM aligned CPTAC3 cc67fdf5-f5ff-4403-89b3-58c1b1e4eef4 50438af2bfe27921528272296f461e5c {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor"} -C3N-03875.WXS.T.hg38 C3N-03875 LSCC WXS tumor CPT0237410007 c144c286-a208-4b0e-8a31-5b40c4c61906_wxs_gdc_realn.bam 40136656577 BAM harmonized CPTAC3 5a5835e8-553c-48d5-9320-0d9a0e9d03b0 c067fb903d21c14ff827dba4490c1e7c {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor"} -C3N-03876.MethArray.Green.T C3N-03876 HNSCC Methylation_Array tumor CPT0237480007 203220070154_R06C01_Grn.idat 13676207 IDAT Green NA CPTAC3 bbacf8fb-4162-40b0-a1ba-2ec7d98910e2 956b69206b732404e8fee2dc19dd03f3 {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor"} -C3N-03876.MethArray.Red.T C3N-03876 HNSCC Methylation_Array tumor CPT0237480007 203220070154_R06C01_Red.idat 13676207 IDAT Red NA CPTAC3 817fad27-8ae4-429d-9b7d-86096a5e7a8d 5f9148163bbd1398acf9bca347969bba {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor"} -C3N-03876.miRNA-Seq.A.hg38 C3N-03876 HNSCC miRNA-Seq tissue_normal CPT0237500006 1e423ff8-ec88-48f9-bc71-b6565e44796c_mirnaseq_gdc_realn.bam 241893338 BAM harmonized CPTAC3 1f6d737e-7ea3-4dd4-bfad-a78f01274158 ca664661c336b0305f3fa7e5f049b00b {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03876.miRNA-Seq.S32_L004_R1.T C3N-03876 HNSCC miRNA-Seq tumor CPT0237480010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L004_R1_001.unaln.bam 218913054 BAM S32_L004_R1 unaligned CPTAC3 e9350c3b-9d25-40a5-9745-c8880cf79c3c 1d286e52e215863b36d58ecc73daf35e {"aliquot_tag": "ALQ_cfe376b0", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03876.miRNA-Seq.S5_L005_R1.A C3N-03876 HNSCC miRNA-Seq tissue_normal CPT0237500006 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L005_R1_001.unaln.bam 215905672 BAM S5_L005_R1 unaligned CPTAC3 04779cb8-d4f1-4b03-a5e9-0169801c8c39 2dc88a7c66661b2d8a656f33765f689b {"aliquot_tag": "ALQ_c4b77aa0", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03876.miRNA-Seq.T.hg38 C3N-03876 HNSCC miRNA-Seq tumor CPT0237480010 7f20e14b-6029-41ac-9b35-9b63a2e37966_mirnaseq_gdc_realn.bam 253452516 BAM harmonized CPTAC3 37a9df3b-f421-455e-9ba8-66e2a769dc85 822f0900378ea5eb232ccc2c7f3e677a {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor"} -C3N-03876.RNA-Seq.chimeric.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.chimeric.gdc_realn.bam 37765291 BAM chimeric harmonized CPTAC3 d92eb879-77c7-49f2-91a0-27952ea60404 5b21dad28778d02250dd7e1745980f9c {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03876.RNA-Seq.chimeric.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.chimeric.gdc_realn.bam 185234089 BAM chimeric harmonized CPTAC3 21b5f82f-8e32-4c13-92d5-176aea97c320 9c1aca35ad66931c86bf935398345f9a {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor"} -C3N-03876.RNA-Seq.genomic.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.genomic.gdc_realn.bam 7645174843 BAM genomic harmonized CPTAC3 3d43b4d6-0076-45eb-ac8f-31d00d2df2b7 54a3717bfb6df826a0f52942aba379ea {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03876.RNA-Seq.genomic.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.genomic.gdc_realn.bam 8869779246 BAM genomic harmonized CPTAC3 3b7110bf-5aa5-449f-8a93-35e0bd6046de 04dba564b425a5825051b7b053632eb1 {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor"} -C3N-03876.RNA-Seq.S12_L003_R1.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3978691428 FASTQ S12_L003_R1 unaligned CPTAC3 875f49db-1e95-411e-85c9-d270f883ac7f 60871aa233d15db994a4ef53479eac6d {"aliquot_tag": "ALQ_cfe376b0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03876.RNA-Seq.S12_L003_R2.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4490877642 FASTQ S12_L003_R2 unaligned CPTAC3 eb1de813-8c68-4a16-8c75-b25aa51eaa31 922e5c8c84480164d66637a58cc03ef3 {"aliquot_tag": "ALQ_cfe376b0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03876.RNA-Seq.S17_L004_R1.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R1_001.fastq.gz 3483156993 FASTQ S17_L004_R1 unaligned CPTAC3 45caa150-b63a-44f2-9a2e-008f0dc75a94 a347a0825a0b90fc8f2528bf6b64e4db {"aliquot_tag": "ALQ_c4b77aa0", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03876.RNA-Seq.S17_L004_R2.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R2_001.fastq.gz 3878085860 FASTQ S17_L004_R2 unaligned CPTAC3 cb3176ad-f36b-42e6-80d4-73cd73605177 f481108781df26f69e237fa59bc8338c {"aliquot_tag": "ALQ_c4b77aa0", "sample": "S17", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03876.RNA-Seq.transcriptome.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.transcriptome.gdc_realn.bam 9971679794 BAM transcriptome harmonized CPTAC3 30391703-9941-4718-bc05-e47bd55b2183 821638a8796935caacba13fcd7cf4894 {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03876.RNA-Seq.transcriptome.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.transcriptome.gdc_realn.bam 11971328567 BAM transcriptome harmonized CPTAC3 adfbf81d-502f-4ebb-ac1b-10f5d45e8f5b bf52bb9deae17bc76f88881e4c4a4216 {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor"} -C3N-03876.WGS.N C3N-03876 HNSCC WGS blood_normal CPT0237540002 CPT0237540002.WholeGenome.RP-1303.bam 62549034482 BAM aligned CPTAC3 fc20e056-a0e0-4e3a-9e58-1029bf5ea6cc c011700cc74d2b8bbe71d93b1a7093c7 {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal"} -C3N-03876.WGS.N.hg38 C3N-03876 HNSCC WGS blood_normal CPT0237540002 d3ac90d8-df39-473f-91a9-f212874fd4d9_wgs_gdc_realn.bam 89418751643 BAM harmonized CPTAC3 79e95feb-c35d-4032-a395-648687bf3cfc a2c8e709677aca459b7e6c58e3baa0ba {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal"} -C3N-03876.WGS.T C3N-03876 HNSCC WGS tumor CPT0237480007 CPT0237480007.WholeGenome.RP-1303.bam 74074136572 BAM aligned CPTAC3 540fafb1-0cb6-4657-9648-9ba034126a94 a815de8f525a451db3e4c314a439624e {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor"} -C3N-03876.WGS.T.hg38 C3N-03876 HNSCC WGS tumor CPT0237480007 f4e27722-8239-4840-8e12-5dbb5e87ac8c_wgs_gdc_realn.bam 106770635832 BAM harmonized CPTAC3 4b82d4f5-1a87-4fb9-9f4a-5a3157441f0d 2971e0aa5adbad793faf2849b95f95ca {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor"} -C3N-03876.WXS.N C3N-03876 HNSCC WXS blood_normal CPT0237540002 CPT0237540002.WholeExome.RP-1303.bam 43163383274 BAM aligned CPTAC3 c1d77084-619a-45e9-8be4-dffc39754314 d5af2f37e55a093682691f150723c8c1 {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal"} -C3N-03876.WXS.N.hg38 C3N-03876 HNSCC WXS blood_normal CPT0237540002 d3ac90d8-df39-473f-91a9-f212874fd4d9_wxs_gdc_realn.bam 59066869127 BAM harmonized CPTAC3 6623712d-5992-451c-8ec2-fc5680f76a44 7a33084f94a771467e7795fec4f8795b {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal"} -C3N-03876.WXS.T C3N-03876 HNSCC WXS tumor CPT0237480007 CPT0237480007.WholeExome.RP-1303.bam 39306743665 BAM aligned CPTAC3 606066ce-6a9b-4c5c-b974-03fe2063fd60 b511d1b719d0fbbb7560fcffac10f7aa {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor"} -C3N-03876.WXS.T.hg38 C3N-03876 HNSCC WXS tumor CPT0237480007 f4e27722-8239-4840-8e12-5dbb5e87ac8c_wxs_gdc_realn.bam 55251059264 BAM harmonized CPTAC3 d063c358-4974-4229-a39a-ebdaada285aa 8b34b84e91c0e3697c89cea04792b9f9 {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor"} -C3N-03877.MethArray.Green.A C3N-03877 LSCC Methylation_Array tissue_normal CPT0237570006 203220070100_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c9a61fd4-ce3d-4f12-b9ef-471e86c14b24 1c828133ce64af7eb2f2e104f8b370a6 {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.MethArray.Green.T C3N-03877 LSCC Methylation_Array tumor CPT0237550010 203219720211_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 22f69dc6-e246-4eae-b8fc-0215962ce664 e93ebe39702d8c87d30ca1b0d830df69 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor"} -C3N-03877.MethArray.Red.A C3N-03877 LSCC Methylation_Array tissue_normal CPT0237570006 203220070100_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 23a8a5a0-c80c-4ea6-b4cc-77a45ee3b09a b1d148e863ad319ddc967325e3dcb2b0 {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.MethArray.Red.T C3N-03877 LSCC Methylation_Array tumor CPT0237550010 203219720211_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 6b2f35f4-ce86-424e-9b6f-85bb0202e115 676a102787db760806a23ffaa1bb7fe3 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor"} -C3N-03877.miRNA-Seq.A.hg38 C3N-03877 LSCC miRNA-Seq tissue_normal CPT0237570009 e34c3e9c-75eb-4bc5-ad39-db0457ab7cae_mirnaseq_gdc_realn.bam 208714700 BAM harmonized CPTAC3 261e0ed8-6b3c-4b47-8a9a-8f00930f9ec1 0eb602f17652add65df8cfd7927148f2 {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.miRNA-Seq.S19_L005_R1.A C3N-03877 LSCC miRNA-Seq tissue_normal CPT0237570009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACTCA_S19_L005_R1_001.unaln.bam 187373885 BAM S19_L005_R1 unaligned CPTAC3 42fea238-f34f-4f3d-9476-4403d69ec8ff d976d4898703dd3ff4a09cd05516e953 {"aliquot_tag": "ALQ_e628bb21", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.miRNA-Seq.S5_L005_R1.T C3N-03877 LSCC miRNA-Seq tumor CPT0237550007 190206_UNC31-K00269_0191_AH2WY5BBXY_TCCCGA_S5_L005_R1_001.unaln.bam 166457054 BAM S5_L005_R1 unaligned CPTAC3 97145240-7461-4bdf-a124-4a6cf7c7bae9 07dbfa5d0df5e380b7563d09ead256cf {"aliquot_tag": "ALQ_7b50c546", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03877.miRNA-Seq.T.hg38 C3N-03877 LSCC miRNA-Seq tumor CPT0237550007 44d86c1c-172b-4194-b636-82c46523e015_mirnaseq_gdc_realn.bam 185926571 BAM harmonized CPTAC3 f84b7386-046d-45b2-ba2e-5f46dc16f9f8 3489be7f0be041bbd1d422ab54ff604b {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor"} -C3N-03877.RNA-Seq.chimeric.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.chimeric.gdc_realn.bam 224294823 BAM chimeric harmonized CPTAC3 87b077c2-d6f2-41e0-98ec-02baacf56971 0ca1fa6da39b5efdaea7f36ed2e0fc36 {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.RNA-Seq.chimeric.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.chimeric.gdc_realn.bam 187002611 BAM chimeric harmonized CPTAC3 647360bb-1d3f-4d0d-b5ed-c32de5f63045 8af538c7e0c9042e346f45b975d6f21d {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor"} -C3N-03877.RNA-Seq.genomic.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.genomic.gdc_realn.bam 9107443734 BAM genomic harmonized CPTAC3 21809ec3-4ae7-467a-ba6a-4b940fa04669 78e5045540b8cbf2222b6b45468aadbe {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.RNA-Seq.genomic.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.genomic.gdc_realn.bam 7628291978 BAM genomic harmonized CPTAC3 be040f8a-f805-4443-ae4e-883a54c5be64 69024d7bcbb1ef007092ad7c3da98c13 {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor"} -C3N-03877.RNA-Seq.S11_L003_R1.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R1_001.fastq.gz 3478384505 FASTQ S11_L003_R1 unaligned CPTAC3 093f7f54-5358-45f0-820c-97a593a0c06e 59842dab18a5465fe87c3ce750d97afb {"aliquot_tag": "ALQ_7b50c546", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03877.RNA-Seq.S11_L003_R2.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R2_001.fastq.gz 3807066291 FASTQ S11_L003_R2 unaligned CPTAC3 f25e0ad3-ac3f-44d1-8276-5cd0a0ee5770 54c0a7f9a8b85fc897d88f6bc0ef1e93 {"aliquot_tag": "ALQ_7b50c546", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03877.RNA-Seq.S24_L006_R1.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 4122614708 FASTQ S24_L006_R1 unaligned CPTAC3 977ecbfb-a56f-4580-abf5-674a53a184b4 3352a8ce27f1541ab02b1ca75d9e0e0d {"aliquot_tag": "ALQ_e628bb21", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.RNA-Seq.S24_L006_R2.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 4580895911 FASTQ S24_L006_R2 unaligned CPTAC3 39478aaa-3dc2-4a0f-b836-c263c85995df 309553994d8c231833147011a2218ed3 {"aliquot_tag": "ALQ_e628bb21", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.RNA-Seq.transcriptome.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.transcriptome.gdc_realn.bam 10449994110 BAM transcriptome harmonized CPTAC3 9ed07303-a0e7-4fa0-8876-3e428a121a91 042108aa96dcc29800fa7973cda5916e {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.RNA-Seq.transcriptome.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.transcriptome.gdc_realn.bam 8270131608 BAM transcriptome harmonized CPTAC3 a052a090-9ab2-4ea8-88ff-73e5bcae435b 5a90c1254a181d27a9c55ab394601065 {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor"} -C3N-03877.WGS.N C3N-03877 LSCC WGS blood_normal CPT0237610002 CPT0237610002.WholeGenome.RP-1303.bam 55048526954 BAM aligned CPTAC3 375ccf0d-8064-429e-8a6d-e000f9df40e6 ab1fe89ade56757fe2813505b4625430 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03877.WGS.N.hg38 C3N-03877 LSCC WGS blood_normal CPT0237610002 32d6f5b7-d2af-405b-9e18-3d437fbcfeab_wgs_gdc_realn.bam 80948441806 BAM harmonized CPTAC3 9ad14321-de83-441c-aff2-20b320e00aac bc68436e2448017d0f166485f7f55c04 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03877.WGS.T C3N-03877 LSCC WGS tumor CPT0237550010 CPT0237550010.WholeGenome.RP-1303.bam 66860096568 BAM aligned CPTAC3 05b6063c-5178-48fe-b027-79460aadb69d 2fe3efc2d28b75e779b4529a7b826d7a {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor"} -C3N-03877.WGS.T.hg38 C3N-03877 LSCC WGS tumor CPT0237550010 2603d898-8eb1-4f1d-93cb-c401918fb57f_wgs_gdc_realn.bam 98401442349 BAM harmonized CPTAC3 27f4794e-fdd1-47d1-9052-0aac0c9e7600 bdf116dbf0d12cea903e409763de6ed4 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor"} -C3N-03877.WXS.A C3N-03877 LSCC WXS tissue_normal CPT0237570006 CPT0237570006.WholeExome.RP-1303.bam 21338041331 BAM aligned CPTAC3 39025e4b-66d8-44bc-9746-c6a3b3b7a21b 76de77f3204c64587ab8ede027d35fed {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.WXS.A.hg38 C3N-03877 LSCC WXS tissue_normal CPT0237570006 03a3f131-9f6c-402c-b73d-c8b4c5ff8dfc_wxs_gdc_realn.bam 29011937773 BAM harmonized CPTAC3 f6e520b8-aac0-458d-98a4-44589f11cd6e d735869e9961a24d4886ce4e4c219b79 {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03877.WXS.N C3N-03877 LSCC WXS blood_normal CPT0237610002 CPT0237610002.WholeExome.RP-1303.bam 23191379894 BAM aligned CPTAC3 6892d4e6-a9d0-42e9-8bf5-fd6cbdb320fc 2a7a4121581501ef7241ec226173e1b5 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03877.WXS.N.hg38 C3N-03877 LSCC WXS blood_normal CPT0237610002 32d6f5b7-d2af-405b-9e18-3d437fbcfeab_wxs_gdc_realn.bam 32159243668 BAM harmonized CPTAC3 a066d294-d257-42c8-b5da-bf96ba7a62f0 4a9611ac546e1153781b91a1a59c8b91 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-03877.WXS.T C3N-03877 LSCC WXS tumor CPT0237550010 CPT0237550010.WholeExome.RP-1303.bam 24451871864 BAM aligned CPTAC3 1ce5eda9-f219-4b88-9c54-6eb151bc2237 431e23b21bf2aff124d81c0792f4d282 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor"} -C3N-03877.WXS.T.hg38 C3N-03877 LSCC WXS tumor CPT0237550010 2603d898-8eb1-4f1d-93cb-c401918fb57f_wxs_gdc_realn.bam 33579821368 BAM harmonized CPTAC3 fb9196cc-1d50-4e6f-8c45-3abfd162a591 33d33d4d50c4beda443fbd32c9c5c984 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor"} -C3N-03878.MethArray.Green.A C3N-03878 HNSCC Methylation_Array tissue_normal CPT0237640006 203271740119_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 64a28c99-767d-45b7-b6d3-0400c34b034f 543219e9ca13485d14e6119dd87df219 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.MethArray.Green.T C3N-03878 HNSCC Methylation_Array tumor CPT0237620010 203281980233_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d1e1481a-fd5a-4845-b78f-5c460a383ae8 246236959a0cc3d432468f99cc874155 {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor"} -C3N-03878.MethArray.Red.A C3N-03878 HNSCC Methylation_Array tissue_normal CPT0237640006 203271740119_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 a132dc95-6464-45a0-90b1-3c66d0bb7f67 d353291d3812c6366d8077b04bdb7697 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.MethArray.Red.T C3N-03878 HNSCC Methylation_Array tumor CPT0237620010 203281980233_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 c54ce562-b94c-4681-ac61-3b62ea24a21f f1a2e606b4cfecc8bab2e99ba15c8f7b {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor"} -C3N-03878.miRNA-Seq.A.hg38 C3N-03878 HNSCC miRNA-Seq tissue_normal CPT0237640009 cc748554-7df4-4ad4-860d-ad8151e19c74_mirnaseq_gdc_realn.bam 352465210 BAM harmonized CPTAC3 52e1daba-50f9-4c33-8da4-377ca559cb98 95313ca39c4978c5d3868e1d4281898a {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.miRNA-Seq.S15_L005_R1.T C3N-03878 HNSCC miRNA-Seq tumor CPT0237620007 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGTCA_S15_L005_R1_001.unaln.bam 230608774 BAM S15_L005_R1 unaligned CPTAC3 e984eaf2-8d08-494d-a26a-2170dd84abe5 d26e45a3db207db51feec711c19aa89b {"aliquot_tag": "ALQ_4fe46bf8", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03878.miRNA-Seq.S6_L005_R1.A C3N-03878 HNSCC miRNA-Seq tissue_normal CPT0237640009 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L005_R1_001.unaln.bam 319324126 BAM S6_L005_R1 unaligned CPTAC3 55511cbb-5522-4f08-9218-9b2a46778bb6 d28c919e06c72c1e91b5ec7b2be8182d {"aliquot_tag": "ALQ_271cb35f", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.miRNA-Seq.T.hg38 C3N-03878 HNSCC miRNA-Seq tumor CPT0237620007 77a1cbe7-ceb9-4243-b0e4-7ee77d10c0da_mirnaseq_gdc_realn.bam 250538576 BAM harmonized CPTAC3 4b88292a-f150-46b9-ad54-6888f9b6cc18 d09d7731f60123ea44604c6c650ed93f {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor"} -C3N-03878.RNA-Seq.chimeric.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.chimeric.gdc_realn.bam 77070435 BAM chimeric harmonized CPTAC3 bc8a3791-f95c-415a-a061-2e4028d5feef 672bc4fef5cb1ac7a8a5165e1ff73b0a {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.RNA-Seq.chimeric.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.chimeric.gdc_realn.bam 34128239 BAM chimeric harmonized CPTAC3 810fb1fb-ac3e-450f-a3db-c106be7ab81b 0942be39b763d9611e0269b902c61bc7 {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor"} -C3N-03878.RNA-Seq.genomic.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.genomic.gdc_realn.bam 9595053815 BAM genomic harmonized CPTAC3 d8cc17c2-8cc0-4388-bdb3-589e355f4101 bb171f007a693e76f4de533bd89f8f42 {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.RNA-Seq.genomic.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.genomic.gdc_realn.bam 8212561737 BAM genomic harmonized CPTAC3 3b989ae7-bb31-48fc-97cc-b36edd9c59d3 1815bace9d05cb2dcd13563b2c922755 {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor"} -C3N-03878.RNA-Seq.S18_L004_R1.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R1_001.fastq.gz 4526848324 FASTQ S18_L004_R1 unaligned CPTAC3 b394fa19-bdfc-4dd9-a1a7-2b877e8d1a5f 502f4851e787feaf96e26ac311003267 {"aliquot_tag": "ALQ_271cb35f", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.RNA-Seq.S18_L004_R2.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R2_001.fastq.gz 5042659351 FASTQ S18_L004_R2 unaligned CPTAC3 4994e721-129a-4b4a-a27b-74a77ca935d2 ce30720727d157b0490a2340b6e08ba7 {"aliquot_tag": "ALQ_271cb35f", "sample": "S18", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.RNA-Seq.S25_L006_R1.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R1_001.fastq.gz 3836135291 FASTQ S25_L006_R1 unaligned CPTAC3 f567f329-24f9-4d8d-a487-2ff897ce1832 a7863102a61f0245bf0ca23aa45a9c5d {"aliquot_tag": "ALQ_4fe46bf8", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03878.RNA-Seq.S25_L006_R2.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R2_001.fastq.gz 3966219637 FASTQ S25_L006_R2 unaligned CPTAC3 120b2b07-94b3-453c-be52-a28ea49bcafc 80c7fd154d85a34503e64e5527ce77aa {"aliquot_tag": "ALQ_4fe46bf8", "sample": "S25", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03878.RNA-Seq.transcriptome.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.transcriptome.gdc_realn.bam 12932520499 BAM transcriptome harmonized CPTAC3 90de5d0e-e75b-4754-8274-b28c810a586a 102c3ad6c6fa19b6d468ade9f2bd0e27 {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.RNA-Seq.transcriptome.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.transcriptome.gdc_realn.bam 9903156816 BAM transcriptome harmonized CPTAC3 84d10225-1516-4d2a-83e5-a3da37cdb5b6 644dfdf836bcbb3e74a23393de011eb9 {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor"} -C3N-03878.WGS.N C3N-03878 HNSCC WGS blood_normal CPT0237680002 CPT0237680002.WholeGenome.RP-1303.bam 83684450921 BAM aligned CPTAC3 1853b5bd-cc1e-466a-8cbb-ad11f2b8008e fb3b466a87a97a8c2a97e7378c37bdd1 {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03878.WGS.N.hg38 C3N-03878 HNSCC WGS blood_normal CPT0237680002 5a965a42-f61f-4e27-81b4-d4ecd3e067b4_wgs_gdc_realn.bam 122543644771 BAM harmonized CPTAC3 e48d1101-0622-4b77-95ea-97430b2c5459 0cc093ecc117698366574398a05a5b53 {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03878.WGS.T C3N-03878 HNSCC WGS tumor CPT0237620010 CPT0237620010.WholeGenome.RP-1303.bam 78130465028 BAM aligned CPTAC3 392f0173-d81e-45e0-91a9-27bbd1c83573 d32d9e96eeb99c8a8f554f837591df2e {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor"} -C3N-03878.WGS.T.hg38 C3N-03878 HNSCC WGS tumor CPT0237620010 0533759f-76d9-4397-b4c1-adf72f1b694e_wgs_gdc_realn.bam 114607417133 BAM harmonized CPTAC3 2de809c0-a130-4a4e-a81d-f2b880c66d77 c51fe2933529230b18977e20a51f17e9 {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor"} -C3N-03878.WXS.A C3N-03878 HNSCC WXS tissue_normal CPT0237640006 CPT0237640006.WholeExome.RP-1303.bam 21226387589 BAM aligned CPTAC3 13baf039-f1e9-4298-be9f-8d4c1bab8be6 b894548d52a6501acb7cb3112c7ea0d3 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.WXS.A.hg38 C3N-03878 HNSCC WXS tissue_normal CPT0237640006 b8298f75-f439-4845-ac6f-9706b4450047_wxs_gdc_realn.bam 29457606492 BAM harmonized CPTAC3 019c34df-cd91-4519-bbaf-6b101f39e929 313ee56887b69ed7ba1f1f9ca0595f76 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03878.WXS.N C3N-03878 HNSCC WXS blood_normal CPT0237680002 CPT0237680002.WholeExome.RP-1303.bam 32025045286 BAM aligned CPTAC3 1db82b41-2ee9-4e4f-985e-61a21e3a4805 58415b17fda801326f294daa4521feca {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03878.WXS.N.hg38 C3N-03878 HNSCC WXS blood_normal CPT0237680002 5a965a42-f61f-4e27-81b4-d4ecd3e067b4_wxs_gdc_realn.bam 43181852165 BAM harmonized CPTAC3 6981637b-abe2-4415-a5f4-2b5f3ec4fb6d 407fd34901f22640ec494f5684cf148e {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal"} -C3N-03878.WXS.T C3N-03878 HNSCC WXS tumor CPT0237620010 CPT0237620010.WholeExome.RP-1303.bam 39931072996 BAM aligned CPTAC3 4685e10e-c915-4b5d-ba91-bcdc6f7817dc 54fd45b4b1044948f9008bb11c08827e {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor"} -C3N-03878.WXS.T.hg38 C3N-03878 HNSCC WXS tumor CPT0237620010 0533759f-76d9-4397-b4c1-adf72f1b694e_wxs_gdc_realn.bam 54646639169 BAM harmonized CPTAC3 2b544939-e131-4a72-bc95-c70ad9dc3f53 b36aba1b8abc6175e4b96b7c39eb3d18 {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor"} -C3N-03880.MethArray.Green.A C3N-03880 LSCC Methylation_Array tissue_normal CPT0237710006 203219670141_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 27bd09ed-3106-411b-a5f7-bf5b56269a4b 802f76a9a313721beb2696a586247564 {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.MethArray.Green.T C3N-03880 LSCC Methylation_Array tumor CPT0237690007 203219670066_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a73e598b-d714-42b8-8548-acebf41615fc 0d6c89772ae50c36024d37b984d9ab20 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor"} -C3N-03880.MethArray.Red.A C3N-03880 LSCC Methylation_Array tissue_normal CPT0237710006 203219670141_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 a7717640-2628-4316-b789-78d57c043322 b7729a479720266b383529a4e871193a {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.MethArray.Red.T C3N-03880 LSCC Methylation_Array tumor CPT0237690007 203219670066_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 e052db5d-4597-4b96-a026-721d0fd9508e decb62c30e5c2e5adf95615c209051e7 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor"} -C3N-03880.miRNA-Seq.A.hg38 C3N-03880 LSCC miRNA-Seq tissue_normal CPT0237710009 83465edf-0b84-4b6b-b2c2-492324ec2c4c_mirnaseq_gdc_realn.bam 242001195 BAM harmonized CPTAC3 039608b9-314e-4f7f-a9de-2c9fc03ce598 c204989e65d064ac656f1c83d3247acf {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.miRNA-Seq.S13_L005_R1.A C3N-03880 LSCC miRNA-Seq tissue_normal CPT0237710009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTAGCT_S13_L005_R1_001.unaln.bam 214012213 BAM S13_L005_R1 unaligned CPTAC3 2e694348-7378-479f-8d7b-4b517ef15688 22fda39ace94be1f556b5f51acaaf90d {"aliquot_tag": "ALQ_24a0ef8a", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.miRNA-Seq.S31_L004_R1.T C3N-03880 LSCC miRNA-Seq tumor CPT0237690010 190206_UNC31-K00269_0191_AH2WY5BBXY_GTCCGC_S31_L004_R1_001.unaln.bam 149007096 BAM S31_L004_R1 unaligned CPTAC3 2d353b88-75c9-468c-8f93-2684e34ba94b c7e799ad71d3f4607c55b3857e3be878 {"aliquot_tag": "ALQ_bf4bfe0b", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03880.miRNA-Seq.T.hg38 C3N-03880 LSCC miRNA-Seq tumor CPT0237690010 1b27161f-526e-4f0e-a65d-a010a1c3ffeb_mirnaseq_gdc_realn.bam 166456396 BAM harmonized CPTAC3 f0572e50-8b4a-49fa-8770-610b75b50e88 41f20d2d52405de3a3786dd578369f48 {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor"} -C3N-03880.RNA-Seq.chimeric.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.chimeric.gdc_realn.bam 167908367 BAM chimeric harmonized CPTAC3 3735407d-c9e9-4496-9a39-bbc86e2683b3 94954f411862bfba9f145e97952febe1 {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.RNA-Seq.chimeric.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.chimeric.gdc_realn.bam 222330521 BAM chimeric harmonized CPTAC3 0087e612-9de7-489b-9b54-225b2c78ba7d 02ada2fb7e5724a15b9b3374040d8c23 {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor"} -C3N-03880.RNA-Seq.genomic.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.genomic.gdc_realn.bam 8713045991 BAM genomic harmonized CPTAC3 0210d27f-d87c-41f4-a6c5-83afe2948cb0 c90a499b63289d526ee1b8d6464aea78 {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.RNA-Seq.genomic.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.genomic.gdc_realn.bam 9161723257 BAM genomic harmonized CPTAC3 94ad7b87-6da0-43b9-912e-2a72322c853f ea3d7171d96675ac82787661b391702b {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor"} -C3N-03880.RNA-Seq.S7_L002_R1.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R1_001.fastq.gz 4346690127 FASTQ S7_L002_R1 unaligned CPTAC3 0d0eeb9c-9b8e-4a0b-be7f-131b97fa53b4 7102eae9849af5d6a88fe830750130e7 {"aliquot_tag": "ALQ_bf4bfe0b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03880.RNA-Seq.S7_L002_R2.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R2_001.fastq.gz 4514924090 FASTQ S7_L002_R2 unaligned CPTAC3 7ec5ed01-9084-4884-b9ba-7aeaa93957d2 2dbf186759601ace2a61a4eadd57a5de {"aliquot_tag": "ALQ_bf4bfe0b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03880.RNA-Seq.S8_L008_R1.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R1_001.fastq.gz 4077191215 FASTQ S8_L008_R1 unaligned CPTAC3 971a92e1-7067-4c8f-ae62-b854cd51c737 23137f973ee0b62f4151c423c972ea24 {"aliquot_tag": "ALQ_24a0ef8a", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.RNA-Seq.S8_L008_R2.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R2_001.fastq.gz 4589515737 FASTQ S8_L008_R2 unaligned CPTAC3 94a02b67-3175-49c3-ab57-511580a3e972 158239d3c6bd3b7960ad0962509373cf {"aliquot_tag": "ALQ_24a0ef8a", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.RNA-Seq.transcriptome.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.transcriptome.gdc_realn.bam 10526166682 BAM transcriptome harmonized CPTAC3 b3b0ce53-fb38-41a1-b043-b7a62a8a1eda 885cb19b40beed1f9a816094f193125e {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.RNA-Seq.transcriptome.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.transcriptome.gdc_realn.bam 9975333425 BAM transcriptome harmonized CPTAC3 a5dd8c98-42aa-4270-ab4a-a15fb2ed5284 8eadb6a2ef465864235410534c63630f {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor"} -C3N-03880.WGS.N C3N-03880 LSCC WGS blood_normal CPT0237750002 CPT0237750002.WholeGenome.RP-1303.bam 55023818043 BAM aligned CPTAC3 6ea399f6-c6fe-411a-abc4-475195474297 13742542ddb1980ad7817b02f7772417 {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03880.WGS.N.hg38 C3N-03880 LSCC WGS blood_normal CPT0237750002 2b466dd6-459a-4dde-9411-28af3eaca5d5_wgs_gdc_realn.bam 80763851740 BAM harmonized CPTAC3 49dc856d-7979-4696-b132-020eb7d68cbb 1cb88e332414abf9cc7f001edd4a814e {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03880.WGS.T C3N-03880 LSCC WGS tumor CPT0237690007 CPT0237690007.WholeGenome.RP-1303.bam 53726213730 BAM aligned CPTAC3 d5ca9185-c46d-43a0-9bb4-caac1086efa4 8f9746350c502c87535ff23d421e5541 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor"} -C3N-03880.WGS.T.hg38 C3N-03880 LSCC WGS tumor CPT0237690007 95f547e8-33a3-489f-a890-bea3e46f4e7c_wgs_gdc_realn.bam 78681906049 BAM harmonized CPTAC3 254381d1-5844-4838-ac8b-b772d38b025b 2583971d49a2e050ea8f262bfe62c6e4 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor"} -C3N-03880.WXS.A C3N-03880 LSCC WXS tissue_normal CPT0237710006 CPT0237710006.WholeExome.RP-1303.bam 26326867013 BAM aligned CPTAC3 4908bf15-92be-4801-afa8-f6d66f42afa2 92245339c9aed6556d4a35b19e168a84 {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.WXS.A.hg38 C3N-03880 LSCC WXS tissue_normal CPT0237710006 d656f06f-8d9a-49ce-88b7-b27fa75340da_wxs_gdc_realn.bam 35512246009 BAM harmonized CPTAC3 ec8f57a2-7f97-4897-b29d-5c9c19348655 6184003600a687edf9c0cad36c8ca481 {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03880.WXS.N C3N-03880 LSCC WXS blood_normal CPT0237750002 CPT0237750002.WholeExome.RP-1303.bam 27874601873 BAM aligned CPTAC3 c06b42b4-afe6-4721-9d64-6862c7ab57c6 fd82bd50652a8a899c45cf5e5bdad944 {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03880.WXS.N.hg38 C3N-03880 LSCC WXS blood_normal CPT0237750002 2b466dd6-459a-4dde-9411-28af3eaca5d5_wxs_gdc_realn.bam 37711480469 BAM harmonized CPTAC3 68f299b8-9efd-4ae6-af93-0e1151f8e4df eb01cdfd60e79de8f90708df93d1b581 {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal"} -C3N-03880.WXS.T C3N-03880 LSCC WXS tumor CPT0237690007 CPT0237690007.WholeExome.RP-1303.bam 26967598769 BAM aligned CPTAC3 6a7e0afd-1ea6-4eab-b5a0-21abf817b588 3f166837e1547216447a8bef7b232854 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor"} -C3N-03880.WXS.T.hg38 C3N-03880 LSCC WXS tumor CPT0237690007 95f547e8-33a3-489f-a890-bea3e46f4e7c_wxs_gdc_realn.bam 37631702533 BAM harmonized CPTAC3 8edd9ee4-5970-42d7-9344-a229bb4ecc76 c7439316c656cb0afa3e94ba2bb1a4ea {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor"} -C3N-03882.MethArray.Green.A C3N-03882 LSCC Methylation_Array tissue_normal CPT0237780006 203220070100_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2c40cdd3-f07c-4e5c-a462-abaf1c006ea4 2af82bd6960aee48a37f09412f197805 {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.MethArray.Green.T C3N-03882 LSCC Methylation_Array tumor CPT0237760006 203219640157_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 652773eb-98b4-44c4-be77-72381c3f5b35 1730203b444d0e3cb1948a5c11e4477d {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor"} -C3N-03882.MethArray.Red.A C3N-03882 LSCC Methylation_Array tissue_normal CPT0237780006 203220070100_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 0b4f1fec-7ea5-4038-b3d3-8a0d474c2781 1bc4f675ebaa54167fa3d03f4dd3a564 {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.MethArray.Red.T C3N-03882 LSCC Methylation_Array tumor CPT0237760006 203219640157_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 d5a93308-d4e6-47df-9807-495f9caba4f4 d836367de4d4d6037cb11ff380d426f1 {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor"} -C3N-03882.miRNA-Seq.A.hg38 C3N-03882 LSCC miRNA-Seq tissue_normal CPT0237780009 6db0d707-35a1-4925-8605-53f68a97d861_mirnaseq_gdc_realn.bam 239926432 BAM harmonized CPTAC3 223ac9f3-f2ab-4bed-a8a6-7b66266e0e80 73074ecf05d91ae7c84aa71616911187 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.miRNA-Seq.S12_L005_R1.A C3N-03882 LSCC miRNA-Seq tissue_normal CPT0237780009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L005_R1_001.unaln.bam 212318069 BAM S12_L005_R1 unaligned CPTAC3 c53ee6dd-6be3-4691-95e1-95ffbcdc2b21 c18c5be3e4c44a7ec007821ede400659 {"aliquot_tag": "ALQ_29b08dfb", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.miRNA-Seq.S37_L004_R1.T C3N-03882 LSCC miRNA-Seq tumor CPT0237760009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTTGTA_S37_L004_R1_001.unaln.bam 178242797 BAM S37_L004_R1 unaligned CPTAC3 b9c0499c-b174-41ab-ac0a-309cd5e35487 c2c60a0a008617ea4fee3f9e4ad64779 {"aliquot_tag": "ALQ_9680339a", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03882.miRNA-Seq.T.hg38 C3N-03882 LSCC miRNA-Seq tumor CPT0237760009 6e76c17d-c46d-4fbc-9c6c-f76251148c77_mirnaseq_gdc_realn.bam 200481127 BAM harmonized CPTAC3 d392c493-6975-45ce-8e19-12b078401d91 86942fa93e9694a4156e6a6393b81e4b {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor"} -C3N-03882.RNA-Seq.chimeric.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.chimeric.gdc_realn.bam 256240369 BAM chimeric harmonized CPTAC3 9ec3d138-6165-47ed-a20d-be415cd6e749 697db6c1ce4d6f8d9ceb43ec00144b51 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.RNA-Seq.chimeric.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.chimeric.gdc_realn.bam 196211898 BAM chimeric harmonized CPTAC3 7a98ff20-b386-4ea9-9945-db05b57f049a 0feb1b60d44963b290d02d2946563117 {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor"} -C3N-03882.RNA-Seq.genomic.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.genomic.gdc_realn.bam 5933635986 BAM genomic harmonized CPTAC3 43f0afd7-d8ae-4eed-bde9-e89ae1f04647 83e1fddd5f44e8813e00b9eaa71d0a93 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.RNA-Seq.genomic.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.genomic.gdc_realn.bam 8357248813 BAM genomic harmonized CPTAC3 766e578a-85be-4ba5-a4c4-2299a600bd16 3b1fd112c62a175f6b750f68fe78c096 {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor"} -C3N-03882.RNA-Seq.S5_L002_R1.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R1_001.fastq.gz 2776063190 FASTQ S5_L002_R1 unaligned CPTAC3 b0d640ca-cb22-4a66-ba1f-69b8fe7ad785 70c480bda998fbaef61626184fea524c {"aliquot_tag": "ALQ_29b08dfb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.RNA-Seq.S5_L002_R1.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R1_001.fastq.gz 4025580142 FASTQ S5_L002_R1 unaligned CPTAC3 c9262a6c-7dcf-424d-83aa-67ca0302dabd 5f5b5b5696ed8873cf47bab4af8d0aa8 {"aliquot_tag": "ALQ_9680339a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03882.RNA-Seq.S5_L002_R2.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R2_001.fastq.gz 3022014343 FASTQ S5_L002_R2 unaligned CPTAC3 11677d95-4d86-4bcb-88e8-1f3ad3ee47db ef6529892cce781fed286859439ab2e9 {"aliquot_tag": "ALQ_29b08dfb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.RNA-Seq.S5_L002_R2.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R2_001.fastq.gz 4428893679 FASTQ S5_L002_R2 unaligned CPTAC3 4aef951a-5c9b-4958-8087-7c984ed73fc0 8da7b85be21e8adc1f4eb5c2e28f83b7 {"aliquot_tag": "ALQ_9680339a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03882.RNA-Seq.transcriptome.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.transcriptome.gdc_realn.bam 6301660694 BAM transcriptome harmonized CPTAC3 5b25cc74-293d-460d-a09b-f26abded9a5e 916e5d665670de63307af39300a1ad21 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.RNA-Seq.transcriptome.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.transcriptome.gdc_realn.bam 10545806269 BAM transcriptome harmonized CPTAC3 7c9fbb50-1229-40b7-a8dd-65b8011284d1 3cb13cf86bd0562e2bc9c0676169b968 {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor"} -C3N-03882.WGS.N C3N-03882 LSCC WGS blood_normal CPT0237820002 CPT0237820002.WholeGenome.RP-1303.bam 60661657819 BAM aligned CPTAC3 4961ce53-fea1-4a27-84a9-dfdb2070ead0 db477b8427b96f16cbe140410aad4cb6 {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal"} -C3N-03882.WGS.N.hg38 C3N-03882 LSCC WGS blood_normal CPT0237820002 08b8360a-6655-4096-bfc9-46dab9751926_wgs_gdc_realn.bam 89442085514 BAM harmonized CPTAC3 09beeeda-3425-4b24-9b16-a40d53dbb759 96c8b32866223756ab8a292ef1cfca10 {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal"} -C3N-03882.WGS.T C3N-03882 LSCC WGS tumor CPT0237760006 CPT0237760006.WholeGenome.RP-1303.bam 58056937231 BAM aligned CPTAC3 4dc46c97-551f-45a2-87cf-6ea392308d76 b8c7772be6ce3b2864c579084e75e44e {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor"} -C3N-03882.WGS.T.hg38 C3N-03882 LSCC WGS tumor CPT0237760006 972d4ce3-7e18-4cec-a086-ce898371b25b_wgs_gdc_realn.bam 85416244306 BAM harmonized CPTAC3 0a295001-3585-47ac-a5cd-7253c8d4dc16 cc17b07d092e602aa59ba790c820f9df {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor"} -C3N-03882.WXS.A C3N-03882 LSCC WXS tissue_normal CPT0237780006 CPT0237780006.WholeExome.RP-1303.bam 24043100667 BAM aligned CPTAC3 a67b58d5-bba6-4db8-94b7-afe44653e926 87199542002adc7039050789868627ea {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.WXS.A.hg38 C3N-03882 LSCC WXS tissue_normal CPT0237780006 eddc54b2-f83b-4c3c-90c8-fb1dac969875_wxs_gdc_realn.bam 33407778345 BAM harmonized CPTAC3 80e42aa9-fab5-4b81-afeb-4b67d58f1403 6810b3d89f2c9470b00e4e72d64ade54 {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03882.WXS.N C3N-03882 LSCC WXS blood_normal CPT0237820002 CPT0237820002.WholeExome.RP-1303.bam 27261228316 BAM aligned CPTAC3 37cb8ea4-91b8-4bd0-b01e-54c0fc73e0fb a5453763374a27c8492d58e6eaae1131 {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal"} -C3N-03882.WXS.N.hg38 C3N-03882 LSCC WXS blood_normal CPT0237820002 08b8360a-6655-4096-bfc9-46dab9751926_wxs_gdc_realn.bam 36944866466 BAM harmonized CPTAC3 bb04dfe1-55c9-4f9d-bb4a-436839300327 b533299456d933ca2de53aa7351f052b {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal"} -C3N-03882.WXS.T C3N-03882 LSCC WXS tumor CPT0237760006 CPT0237760006.WholeExome.RP-1303.bam 25758683191 BAM aligned CPTAC3 f8e3743b-f546-40e6-a4cd-545cd84a5e57 5a7b19a82340d1994bf1056fc8d42afa {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor"} -C3N-03882.WXS.T.hg38 C3N-03882 LSCC WXS tumor CPT0237760006 972d4ce3-7e18-4cec-a086-ce898371b25b_wxs_gdc_realn.bam 35827106028 BAM harmonized CPTAC3 840c57c9-2d79-44e4-a134-fe434377ad18 3b8cd3adf598a8ab3c6849cea6b98cc1 {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor"} -C3N-03884.MethArray.Green.A C3N-03884 PDA Methylation_Array tissue_normal CPT0237850007 203561450023_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3e962de9-1c1f-458a-b92e-237dc790efbd 3d3a1176c837ed4bbf08e41e197e091f {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03884.MethArray.Green.T C3N-03884 PDA Methylation_Array tumor CPT0237840007 203561620040_R01C01_Grn.idat 13676212 IDAT Green NA CPTAC3 9cf266f0-9f81-4182-8a66-ef304531f70c 17f6e3fe3d00b3b2724ecc3c94294a87 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor"} -C3N-03884.MethArray.Red.A C3N-03884 PDA Methylation_Array tissue_normal CPT0237850007 203561450023_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 555c0ca8-4c30-412e-b5f1-8e9eb11327c8 31ef1c173d0a29b4e1bae2ea7bafd448 {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03884.MethArray.Red.T C3N-03884 PDA Methylation_Array tumor CPT0237840007 203561620040_R01C01_Red.idat 13676212 IDAT Red NA CPTAC3 4edad122-e429-40f8-bb03-098fe6b587c5 f7dddb4594c44e08f5105c5181dfa659 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor"} -C3N-03884.miRNA-Seq.S168_L007_R1.T C3N-03884 PDA miRNA-Seq tumor CPT0237840010 190828_UNC32-K00270_0200_BH7GVJBBXY_ACAGTG_S168_L007_R1_001.unaln.bam 394032776 BAM S168_L007_R1 unaligned CPTAC3 a83670e8-27f1-416f-954d-791e7627673d 4ae4963a218e8863c6d0d05b8cc70fbf {"aliquot_tag": "ALQ_7dd15bca", "sample": "S168", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03884.miRNA-Seq.T.hg38 C3N-03884 PDA miRNA-Seq tumor CPT0237840010 d16eea16-2b24-4890-a3c8-968292edaa85_mirnaseq_gdc_realn.bam 437245397 BAM harmonized CPTAC3 957f6599-ebef-40ed-80e5-30e0fed4c3b6 b3991b534230bc6e23788a184baff489 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor"} -C3N-03884.RNA-Seq.chimeric.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.chimeric.gdc_realn.bam 120544865 BAM chimeric harmonized CPTAC3 bb0a6ece-dd31-4453-adcd-157887792f1b 525757ef8f1926e4ca4003c061b71f73 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor"} -C3N-03884.RNA-Seq.genomic.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.genomic.gdc_realn.bam 7514768956 BAM genomic harmonized CPTAC3 101259b3-52fa-42cb-b837-e8a8636c67b7 8243b120ed3407f106c465ffb9588466 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor"} -C3N-03884.RNA-Seq.S4_L001_R1.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R1_001.fastq.gz 2696062533 FASTQ S4_L001_R1 unaligned CPTAC3 1678b0d3-790a-47c6-8932-84b97d78b646 50000a1bf8a43f5cfb02604be9a2f068 {"aliquot_tag": "ALQ_7dd15bca", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03884.RNA-Seq.S4_L001_R2.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R2_001.fastq.gz 2709463050 FASTQ S4_L001_R2 unaligned CPTAC3 a8a094fa-5246-43bc-8935-4df5619244bc 953848572f69b52ac023b83c1080d1a9 {"aliquot_tag": "ALQ_7dd15bca", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03884.RNA-Seq.transcriptome.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.transcriptome.gdc_realn.bam 6134701698 BAM transcriptome harmonized CPTAC3 8472f05f-572b-40b9-bb13-5e01fe6746db bfb4636a0326b32350513039d7ceef10 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor"} -C3N-03884.WGS.N C3N-03884 PDA WGS blood_normal CPT0237890002 CPT0237890002.WholeGenome.RP-1303.bam 56628943971 BAM aligned CPTAC3 27da3126-fd91-4fd3-94a6-435ad06e2001 c1377b33d934b96c57b202cec5352277 {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal"} -C3N-03884.WGS.N.hg38 C3N-03884 PDA WGS blood_normal CPT0237890002 5ba8387a-5795-4b55-8f83-9d3440b657f2_wgs_gdc_realn.bam 81522284921 BAM harmonized CPTAC3 94c56c37-9798-4a89-9078-f02d4a2f44d4 fb57f320d5c94e105278e68f17d658a3 {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal"} -C3N-03884.WGS.T C3N-03884 PDA WGS tumor CPT0237840007 CPT0237840007.WholeGenome.RP-1303.bam 163799146402 BAM aligned CPTAC3 079dda1b-2709-46d9-9fa2-747ba3f8e684 b2bd936fc45e70b65788a1a63d818d43 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor"} -C3N-03884.WGS.T.hg38 C3N-03884 PDA WGS tumor CPT0237840007 87297bf5-8869-4ea2-9dd3-976928552d5c_wgs_gdc_realn.bam 232452383508 BAM harmonized CPTAC3 b3693605-b4a0-4222-88a6-eadb5a249e90 d77bf2cf426c60aaadd1455ccde24832 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor"} -C3N-03884.WXS.A C3N-03884 PDA WXS tissue_normal CPT0237850007 CPT0237850007.WholeExome.RP-1303.bam 21887015023 BAM aligned CPTAC3 e3901c47-1c8a-432a-8159-12a105ee2ddd e17594e7ce9f4ba030bff14a727ff8c4 {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03884.WXS.A.hg38 C3N-03884 PDA WXS tissue_normal CPT0237850007 f20d08f0-8eb4-483d-8916-3b19bf7292f4_wxs_gdc_realn.bam 29804537263 BAM harmonized CPTAC3 1592ef66-643e-48bc-bdd7-65ab54c84167 d93f70005f1375d23175cf04883db6f8 {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03884.WXS.N C3N-03884 PDA WXS blood_normal CPT0237890002 CPT0237890002.WholeExome.RP-1303.bam 24745672953 BAM aligned CPTAC3 9946aab5-0bff-4c2a-a00d-d05d540c064f 17bf67ba8e18cd860232c327c005a01b {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal"} -C3N-03884.WXS.N.hg38 C3N-03884 PDA WXS blood_normal CPT0237890002 5ba8387a-5795-4b55-8f83-9d3440b657f2_wxs_gdc_realn.bam 33830566362 BAM harmonized CPTAC3 2b1c4de6-c7a8-46c5-8aa3-2d0deadf966f c522b0754934d014b4b547f585b09a8e {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal"} -C3N-03884.WXS.T C3N-03884 PDA WXS tumor CPT0237840007 CPT0237840007.WholeExome.RP-1303.bam 48812729493 BAM aligned CPTAC3 3e8f0562-d90a-4994-a23d-76b336af7d8c 5b3f5cd3e0957efae35503ed5edaaebf {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor"} -C3N-03884.WXS.T.hg38 C3N-03884 PDA WXS tumor CPT0237840007 87297bf5-8869-4ea2-9dd3-976928552d5c_wxs_gdc_realn.bam 68175848017 BAM harmonized CPTAC3 878beaab-a108-4aa4-b18a-a0d91624450a c285cfdd7c3ebfb1a47a8af88652b9c6 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor"} -C3N-03886.MethArray.Green.A C3N-03886 LSCC Methylation_Array tissue_normal CPT0221660006 203219760074_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9c04d0cd-99f0-4e54-abde-9650f24dd2d7 3516164af9c1b8c42a8a711a4882ffd2 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03886.MethArray.Green.T C3N-03886 LSCC Methylation_Array tumor CPT0221650006 203219650098_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 35d609ef-7268-4d2d-9bff-236353f4882d 8ab0113107729d9d9113b7a8347bf44d {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor"} -C3N-03886.MethArray.Red.A C3N-03886 LSCC Methylation_Array tissue_normal CPT0221660006 203219760074_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 8ee57a02-98e6-4456-860c-18d8be72633f f4c7c7b9fc4e618b6afcb7c0964cc9d9 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03886.MethArray.Red.T C3N-03886 LSCC Methylation_Array tumor CPT0221650006 203219650098_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 5eb279ae-0024-4626-a090-d2e49c2b2549 e8e5fa7c2d3b05ff4d8c9abf1f7a740a {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor"} -C3N-03886.miRNA-Seq.S38_L002_R1.T C3N-03886 LSCC miRNA-Seq tumor CPT0221650009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGCTAC_S38_L002_R1_001.unaln.bam 172303621 BAM S38_L002_R1 unaligned CPTAC3 dca7c184-a415-4cf2-93dd-2c22957e7067 67e57a2177b23a1a117094421d6f4614 {"aliquot_tag": "ALQ_b506af4b", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03886.miRNA-Seq.T.hg38 C3N-03886 LSCC miRNA-Seq tumor CPT0221650009 246fb493-3c11-410a-a37b-ea57dad4ad8d_mirnaseq_gdc_realn.bam 191671121 BAM harmonized CPTAC3 bf92552a-1335-48b5-a11b-1ce07c39b5b4 2f0bd3e78c05f692571290308668b0ca {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor"} -C3N-03886.RNA-Seq.chimeric.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.chimeric.gdc_realn.bam 45463265 BAM chimeric harmonized CPTAC3 232186f6-9195-4b80-b031-f769f402acb2 7ac6087f5788e553f2ced0b988e712a3 {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor"} -C3N-03886.RNA-Seq.genomic.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.genomic.gdc_realn.bam 15865791292 BAM genomic harmonized CPTAC3 3266560c-3c0e-4bbd-a0e7-8871b63afab5 41ca848c6dd16f35ce3725af0f238429 {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor"} -C3N-03886.RNA-Seq.S17_L005_R1.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R1_001.fastq.gz 4178740767 FASTQ S17_L005_R1 unaligned CPTAC3 de33e2bb-7c5c-4f98-9b87-bec139d5e995 51b17fea925e3ebb6a4750eede56e6b1 {"aliquot_tag": "ALQ_b506af4b", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03886.RNA-Seq.S17_L005_R2.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R2_001.fastq.gz 4758890971 FASTQ S17_L005_R2 unaligned CPTAC3 d58be8b5-b6c7-4bb2-b5da-d2d15d69e7e8 5f8b8c83417b0789391c784fcad2c150 {"aliquot_tag": "ALQ_b506af4b", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03886.RNA-Seq.transcriptome.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.transcriptome.gdc_realn.bam 7834382134 BAM transcriptome harmonized CPTAC3 aaa0f769-cae2-48ad-ba5f-b49f0d9555d0 3a4febaa20837ed9812745ff0028a38f {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor"} -C3N-03886.WGS.N C3N-03886 LSCC WGS blood_normal CPT0221750002 CPT0221750002.WholeGenome.RP-1303.bam 60925070171 BAM aligned CPTAC3 263085d9-f508-4475-8499-3b81d88f9904 5c87561c329cf78bfd493384715b8fe2 {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal"} -C3N-03886.WGS.N.hg38 C3N-03886 LSCC WGS blood_normal CPT0221750002 b3179798-a286-4505-b913-4b922716565c_wgs_gdc_realn.bam 88759881829 BAM harmonized CPTAC3 2718410a-0a35-41b7-81e0-c5ddc8fa8c31 76f1ec591272d81b8f48fa385f114212 {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal"} -C3N-03886.WGS.T C3N-03886 LSCC WGS tumor CPT0221650006 CPT0221650006.WholeGenome.RP-1303.bam 68818956241 BAM aligned CPTAC3 1b50f970-2066-46bb-ac03-128af7a96e4f 678a754681c5063174fe1fa4cb18a777 {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor"} -C3N-03886.WGS.T.hg38 C3N-03886 LSCC WGS tumor CPT0221650006 bc1a4b77-dcb6-4ee6-8c9f-d98f04caed85_wgs_gdc_realn.bam 98556067229 BAM harmonized CPTAC3 12a14574-1d43-4e12-8151-71a84ce1f0d2 be34f433d6bac91cb71910dafe3b9008 {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor"} -C3N-03886.WXS.A C3N-03886 LSCC WXS tissue_normal CPT0221660006 CPT0221660006.WholeExome.RP-1303.bam 21107621471 BAM aligned CPTAC3 b896b5f0-92b4-4351-8870-5bc3b5f4bd50 da854e2ce7216b600c60556237adce14 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03886.WXS.A.hg38 C3N-03886 LSCC WXS tissue_normal CPT0221660006 e64e0512-4048-42b2-b5b2-9586ebc65a5b_wxs_gdc_realn.bam 28766981206 BAM harmonized CPTAC3 866266c3-d922-4b82-80e6-01125640ca62 d246b95234e9b99b94ea4509b2ec4e27 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03886.WXS.N C3N-03886 LSCC WXS blood_normal CPT0221750002 CPT0221750002.WholeExome.RP-1303.bam 33070535528 BAM aligned CPTAC3 9c34a835-8871-48e1-9c26-2dfcbd4e5d89 5866e0bb8620b5a39f1d27a4d7ec2187 {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal"} -C3N-03886.WXS.N.hg38 C3N-03886 LSCC WXS blood_normal CPT0221750002 b3179798-a286-4505-b913-4b922716565c_wxs_gdc_realn.bam 45068587962 BAM harmonized CPTAC3 71a8e255-ea4f-463f-934f-4bc877733b20 ef2caf0d9b3a9cd63757bf84d4610a4e {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal"} -C3N-03886.WXS.T C3N-03886 LSCC WXS tumor CPT0221650006 CPT0221650006.WholeExome.RP-1303.bam 26495383614 BAM aligned CPTAC3 116749f2-be39-4166-8276-d4e9dccd98f1 215fb491f95fe37d8e3aa9219eb3d88c {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor"} -C3N-03886.WXS.T.hg38 C3N-03886 LSCC WXS tumor CPT0221650006 bc1a4b77-dcb6-4ee6-8c9f-d98f04caed85_wxs_gdc_realn.bam 37176525652 BAM harmonized CPTAC3 c424eaa1-3ed7-4967-bfd0-b4a7f884fe80 521cbfd01a773b4c2ea59e82f92318da {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor"} -C3N-03888.MethArray.Green.A C3N-03888 HNSCC Methylation_Array tissue_normal CPT0222200006 203271740156_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4a4e9ca6-5035-4dbd-8899-1d1770a1238a 20d3be9a23fa9e8cf10ddeb41d40109c {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.MethArray.Green.T C3N-03888 HNSCC Methylation_Array tumor CPT0222180006 203273200080_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4369286b-73bd-4143-aa1a-31acb22511a1 584be609d4a7791bcae2864378bd843d {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor"} -C3N-03888.MethArray.Red.A C3N-03888 HNSCC Methylation_Array tissue_normal CPT0222200006 203271740156_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 e86b9b5a-f920-48e3-aa70-428d1625a3e6 36c8db957bb42901c61d26634c3e19d5 {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.MethArray.Red.T C3N-03888 HNSCC Methylation_Array tumor CPT0222180006 203273200080_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 a6580077-ad63-48bc-bcc8-50fca774e22a f9aa8737f557936ae3d49ad135542ed7 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor"} -C3N-03888.miRNA-Seq.A.hg38 C3N-03888 HNSCC miRNA-Seq tissue_normal CPT0222200009 88a939be-faa7-456e-b729-0b78e6e7cacc_mirnaseq_gdc_realn.bam 330318648 BAM harmonized CPTAC3 7140b257-ca82-4875-9ab6-399a8abe7f7d 95cb718bd0c9d5bb8bfce025f49c5b95 {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.miRNA-Seq.S26_L004_R1.T C3N-03888 HNSCC miRNA-Seq tumor CPT0222180009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L004_R1_001.unaln.bam 201760053 BAM S26_L004_R1 unaligned CPTAC3 c5ad1ccb-4942-4031-930e-95dd38cf5ab5 147e0dbb6223da7fbed04cb34fa91f86 {"aliquot_tag": "ALQ_617b41df", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03888.miRNA-Seq.S31_L004_R1.A C3N-03888 HNSCC miRNA-Seq tissue_normal CPT0222200009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L004_R1_001.unaln.bam 295858461 BAM S31_L004_R1 unaligned CPTAC3 0a94164e-06a1-4fb4-abc2-9c2430a361bc 09de5cd30b3806568bc79abf2c4fd29c {"aliquot_tag": "ALQ_d79f78b0", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.miRNA-Seq.T.hg38 C3N-03888 HNSCC miRNA-Seq tumor CPT0222180009 2452b2f3-1b5b-4ac2-84bd-228b7b292fcc_mirnaseq_gdc_realn.bam 226713649 BAM harmonized CPTAC3 1321b9ca-bc13-4b17-a135-841d75caa5b0 bb2c6b5b631d724030487170f1084223 {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.chimeric.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.chimeric.gdc_realn.bam 156733050 BAM chimeric harmonized CPTAC3 08bf9e2c-f376-46fb-b695-418251ae304c c8e3cfb76997861618ab89a0a93b6c8b {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.RNA-Seq.chimeric.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.chimeric.gdc_realn.bam 247290708 BAM chimeric harmonized CPTAC3 42bfb5c6-c29e-44ac-9957-fd757b08357f 0c26510b366e494b7c3b84100fab839f {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.chimeric.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.chimeric.gdc_realn.bam 75591505 BAM chimeric harmonized CPTAC3 73c53183-60b7-4aa1-a0cd-ea746bdcfe4b 4c56d8a8590e5a9844ed72a88af74c05 {"aliquot_tag": "ALQ_ba9f92a3", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.genomic.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.genomic.gdc_realn.bam 6599835204 BAM genomic harmonized CPTAC3 a218d75a-5610-425e-b693-91cc200dee5d a3cf78ed26e039634f671f711d6217ad {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.RNA-Seq.genomic.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.genomic.gdc_realn.bam 9766914846 BAM genomic harmonized CPTAC3 70d7e6f4-2d37-4532-9a5b-ff2519e8fc5a 6b4a25757e72c1b5d91d454392870857 {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.genomic.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.genomic.gdc_realn.bam 5649968948 BAM genomic harmonized CPTAC3 d7e4f485-6dba-4ac2-9d03-47cb3f1caded 93d40c51443272607cdffa77e9842259 {"aliquot_tag": "ALQ_ba9f92a3", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.S10_L003_R1.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3030883408 FASTQ S10_L003_R1 unaligned CPTAC3 fcc77279-5b11-48ef-a3dd-b8f405001db8 3ce1358dcb9b79668f390eeb70bfa6f3 {"aliquot_tag": "ALQ_d79f78b0", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.RNA-Seq.S10_L003_R2.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R2_001.fastq.gz 3442612036 FASTQ S10_L003_R2 unaligned CPTAC3 3c012358-3cb4-48ff-8d59-6f9569938efb 0b4237a627a62d42eb45e93ad7cb37e3 {"aliquot_tag": "ALQ_d79f78b0", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.RNA-Seq.S14_L004_R1.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4553645416 FASTQ S14_L004_R1 unaligned CPTAC3 17188511-f16d-405d-89fb-ed2ca75347f7 8e6a4fdad2cc5393ba888c39e47aa19e {"aliquot_tag": "ALQ_617b41df", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.S14_L004_R2.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R2_001.fastq.gz 4928814920 FASTQ S14_L004_R2 unaligned CPTAC3 b765e30c-be42-4c21-a619-b408c14917a4 2807fb9668a6b0117649b96c4ce84206 {"aliquot_tag": "ALQ_617b41df", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.S92_R1.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R1_001.fastq.gz 3503178804 FASTQ S92_R1 unaligned CPTAC3 cebe98a9-1182-4016-af99-a4a2e46a85c1 f4839edd581684c751d417b1cb214173 {"aliquot_tag": "ALQ_ba9f92a3", "sample": "S92", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.S92_R2.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R2_001.fastq.gz 3694628358 FASTQ S92_R2 unaligned CPTAC3 09fe03e6-8b5e-4f61-8f56-e021b63f1dab bd333058683d32fc08237a8b19cdb785 {"aliquot_tag": "ALQ_ba9f92a3", "sample": "S92", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.transcriptome.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.transcriptome.gdc_realn.bam 9418310106 BAM transcriptome harmonized CPTAC3 3a78d2cc-a7ae-4b9a-a583-0e889ec2ad79 043008e4882544abe32bc7b290d6f61b {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.RNA-Seq.transcriptome.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.transcriptome.gdc_realn.bam 13384821203 BAM transcriptome harmonized CPTAC3 c7f65f1c-4c2c-4307-a93d-4a204b740caf 1bd47433eb091a26cec610910ab85366 {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor"} -C3N-03888.RNA-Seq.transcriptome.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.transcriptome.gdc_realn.bam 3873275061 BAM transcriptome harmonized CPTAC3 d76c908a-0374-4d3a-bca9-1685ff704c1e 77270d7fb60f9c50f8ceee9c6df7b9b2 {"aliquot_tag": "ALQ_ba9f92a3", "gdc_sample_type": "Primary Tumor"} -C3N-03888.WGS.N C3N-03888 HNSCC WGS blood_normal CPT0222290002 CPT0222290002.WholeGenome.RP-1303.bam 90258196023 BAM aligned CPTAC3 c37f5e9e-4c06-4de4-874b-3d66cbfb99c8 98434f2cb51e00a82afe9dcc6e3a3a0c {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal"} -C3N-03888.WGS.N.hg38 C3N-03888 HNSCC WGS blood_normal CPT0222290002 86c78340-b7f1-4b1d-928e-86ce8f3894b3_wgs_gdc_realn.bam 131686408082 BAM harmonized CPTAC3 87a40420-6df6-4d45-a135-da580355a587 9552f9473cc334bdb5727bb451d71983 {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal"} -C3N-03888.WGS.T C3N-03888 HNSCC WGS tumor CPT0222180006 CPT0222180006.WholeGenome.RP-1303.bam 66960707763 BAM aligned CPTAC3 2d6dd5c7-8e55-4425-85d9-3988c2a1e086 9cfa4f227562f3e299560386cfefaec8 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor"} -C3N-03888.WGS.T.hg38 C3N-03888 HNSCC WGS tumor CPT0222180006 38209b0e-a918-4b88-a088-b73ba722a869_wgs_gdc_realn.bam 96431595489 BAM harmonized CPTAC3 2d28c6b8-2099-480f-adc0-2b9a24b400a6 55ec6e556cd45d50d55649d8c644c5f1 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor"} -C3N-03888.WXS.A C3N-03888 HNSCC WXS tissue_normal CPT0222200006 CPT0222200006.WholeExome.RP-1303.bam 24227532300 BAM aligned CPTAC3 55746eee-03dc-4142-8eba-a2eb3df23734 820b467eda4aaed6002735e7f6c672c6 {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.WXS.A.hg38 C3N-03888 HNSCC WXS tissue_normal CPT0222200006 55569947-5f0d-4412-b9b5-bb7a8e298bbe_wxs_gdc_realn.bam 33958206984 BAM harmonized CPTAC3 7fe71edb-e254-439d-ab36-ab45388a8535 e40932453e093def54835d9c1dfc3507 {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03888.WXS.N C3N-03888 HNSCC WXS blood_normal CPT0222290002 CPT0222290002.WholeExome.RP-1303.bam 45712126177 BAM aligned CPTAC3 43cc321b-7b3c-4a78-989d-87daf5b94eb3 c3499e7387cce6f737aadf57ccaf714e {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal"} -C3N-03888.WXS.N.hg38 C3N-03888 HNSCC WXS blood_normal CPT0222290002 86c78340-b7f1-4b1d-928e-86ce8f3894b3_wxs_gdc_realn.bam 63243431557 BAM harmonized CPTAC3 6abded9f-d254-48c6-ba93-bc873d7957d4 f9b62d5b9bda8a429745830e11829aef {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal"} -C3N-03888.WXS.T C3N-03888 HNSCC WXS tumor CPT0222180006 CPT0222180006.WholeExome.RP-1303.bam 20877827636 BAM aligned CPTAC3 dd4cd44f-bdf0-4a29-8e98-9691de73574e d9b19eb639c81f7ad1cee0b495feb336 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor"} -C3N-03888.WXS.T.hg38 C3N-03888 HNSCC WXS tumor CPT0222180006 38209b0e-a918-4b88-a088-b73ba722a869_wxs_gdc_realn.bam 29200262975 BAM harmonized CPTAC3 73c30c4b-b8ca-4856-a6d2-45b20304ebd4 c7595314b79878c63bae7d35292297e6 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor"} -C3N-03889.MethArray.Green.A C3N-03889 HNSCC Methylation_Array tissue_normal CPT0222380006 203220070084_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 cbc61f77-a704-4c95-884c-57b341bfaece 505b34dcd4db5a9c9271dc27626b677d {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.MethArray.Green.T C3N-03889 HNSCC Methylation_Array tumor CPT0222360006 203219650071_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0d56f023-bf21-4f28-bbda-b0bc87ac5f02 619a4a7cbb8a19e6cb0ea9d404d1fcd3 {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor"} -C3N-03889.MethArray.Red.A C3N-03889 HNSCC Methylation_Array tissue_normal CPT0222380006 203220070084_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 db2cabd3-775b-402d-ad12-f040853ed126 79a6faf025a94e8cb7aa3cf0cb0c58e3 {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.MethArray.Red.T C3N-03889 HNSCC Methylation_Array tumor CPT0222360006 203219650071_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 a5efb44a-6daf-42e2-b0d7-bb10c33c33b5 35caacbcbdbc36c885df8431feb1dfad {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor"} -C3N-03889.miRNA-Seq.A.hg38 C3N-03889 HNSCC miRNA-Seq tissue_normal CPT0222380009 9573ab0b-4cbd-4471-8eb3-6ea38df4e9d7_mirnaseq_gdc_realn.bam 259212799 BAM harmonized CPTAC3 94100cb8-6e04-4edf-917d-6d6f8f8b0aac ba6294e6fb29a20a881093700a5157fc {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.miRNA-Seq.S11_L005_R1.A C3N-03889 HNSCC miRNA-Seq tissue_normal CPT0222380009 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L005_R1_001.unaln.bam 234017767 BAM S11_L005_R1 unaligned CPTAC3 7f26d074-c140-452c-b6a2-1643cd724b73 de226de55c9d854d4038dbe2741a3635 {"aliquot_tag": "ALQ_2cb3e0d4", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.miRNA-Seq.S27_L004_R1.T C3N-03889 HNSCC miRNA-Seq tumor CPT0222360009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATTCCT_S27_L004_R1_001.unaln.bam 264225021 BAM S27_L004_R1 unaligned CPTAC3 7422100b-2dda-4027-9eb5-00e179af088c 4acd52485bbe69d219a68685d3998087 {"aliquot_tag": "ALQ_93835eb5", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03889.miRNA-Seq.T.hg38 C3N-03889 HNSCC miRNA-Seq tumor CPT0222360009 dd3b5059-ee17-4418-b926-487464175aad_mirnaseq_gdc_realn.bam 287837655 BAM harmonized CPTAC3 6fdeab76-41c1-4664-8f46-6f9ce9a59ec4 c27185643e5df2cedf0600a64675cfc8 {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.chimeric.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.chimeric.gdc_realn.bam 32679148 BAM chimeric harmonized CPTAC3 1c170672-dd11-4592-b87e-5ca02d516bc2 bfc67e0df034117dcf2f9f978c96c4be {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.RNA-Seq.chimeric.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.chimeric.gdc_realn.bam 263211272 BAM chimeric harmonized CPTAC3 aa6e1c92-3145-4ce0-b566-2d8e73fd930b c4c671d21850f67ff6025433d14cc9e8 {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.chimeric.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.chimeric.gdc_realn.bam 87999035 BAM chimeric harmonized CPTAC3 583933ad-d66c-4ca8-87c8-ac9e0fb5f379 5eef62e7887da275b9151092280ff1e9 {"aliquot_tag": "ALQ_160622de", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.genomic.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.genomic.gdc_realn.bam 9151960888 BAM genomic harmonized CPTAC3 afe2ffe6-e9fd-4e96-9493-1a0f269ae0cf fc6690035d8c571fe6b67956148cd294 {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.RNA-Seq.genomic.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.genomic.gdc_realn.bam 7612100018 BAM genomic harmonized CPTAC3 d1f6235f-379a-4ac9-b376-2e5f4690a28d ea9c63b354cc215614258eb04ea892d7 {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.genomic.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.genomic.gdc_realn.bam 6363825981 BAM genomic harmonized CPTAC3 b4bf2783-f50f-490d-9639-00ce93ab506a b46acf67a48923600e28cf19bd3cc03a {"aliquot_tag": "ALQ_160622de", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.S13_L004_R1.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3629732826 FASTQ S13_L004_R1 unaligned CPTAC3 2221c762-196d-4b8b-ba2c-f4bdc53afd93 59d1bfe392776cfa1b75ae724c5960a8 {"aliquot_tag": "ALQ_93835eb5", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.S13_L004_R2.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 3975259091 FASTQ S13_L004_R2 unaligned CPTAC3 cacbff5a-955b-414d-a704-d6ec3a743d7a c2f1c21ef0e813f69a8dc679e319ef16 {"aliquot_tag": "ALQ_93835eb5", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.S21_L005_R1.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R1_001.fastq.gz 4036130771 FASTQ S21_L005_R1 unaligned CPTAC3 f7e2adee-d8e3-4c03-b60e-ac195c5c288b 43396bf5e3c7ae3d96ddc6e0874b4ad0 {"aliquot_tag": "ALQ_2cb3e0d4", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.RNA-Seq.S21_L005_R2.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R2_001.fastq.gz 4522765754 FASTQ S21_L005_R2 unaligned CPTAC3 af496696-82f4-498d-8992-601da5f26bfc 5fa7abdd680c5402b26f0ee01a822908 {"aliquot_tag": "ALQ_2cb3e0d4", "sample": "S21", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.RNA-Seq.S22_R1.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R1_001.fastq.gz 3729113005 FASTQ S22_R1 unaligned CPTAC3 ed2a9f0d-bfdf-4349-9bfe-df245ac6cccb 9250592a445668b043cb0c192f4e613a {"aliquot_tag": "ALQ_160622de", "sample": "S22", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.S22_R2.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R2_001.fastq.gz 3990982392 FASTQ S22_R2 unaligned CPTAC3 785c8c78-71a9-4323-894a-ca12b22f91bd a4b990da1171147e43c23ade27a4741d {"aliquot_tag": "ALQ_160622de", "sample": "S22", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.transcriptome.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.transcriptome.gdc_realn.bam 9388371473 BAM transcriptome harmonized CPTAC3 f09ac40c-ac0e-4193-9c2f-f94338799e1a 1c10be29eadac4e47359ef9f3deb7569 {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.RNA-Seq.transcriptome.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.transcriptome.gdc_realn.bam 10126858979 BAM transcriptome harmonized CPTAC3 b62bcad8-e467-4002-adc0-d2246def818a c4c957a1f448210fef950957bcba923f {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor"} -C3N-03889.RNA-Seq.transcriptome.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.transcriptome.gdc_realn.bam 5356521464 BAM transcriptome harmonized CPTAC3 f18c21c7-5560-414b-ba11-bf8e41a12f21 006862222afdea02f3f96464968c247f {"aliquot_tag": "ALQ_160622de", "gdc_sample_type": "Primary Tumor"} -C3N-03889.WGS.N C3N-03889 HNSCC WGS blood_normal CPT0222470002 CPT0222470002.WholeGenome.RP-1303.bam 71054681959 BAM aligned CPTAC3 4c231465-15c4-41ec-b0f9-111611d8233f df2c66612ede5e913c99d20e74e8a853 {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal"} -C3N-03889.WGS.N.hg38 C3N-03889 HNSCC WGS blood_normal CPT0222470002 f7210b31-9dd5-48f5-b101-dd58e93f7dc0_wgs_gdc_realn.bam 102403966142 BAM harmonized CPTAC3 41ed5788-2219-4055-9e2e-c432891610c3 bebae1be7a3280a09b2282c28c427280 {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal"} -C3N-03889.WGS.T C3N-03889 HNSCC WGS tumor CPT0222360006 CPT0222360006.WholeGenome.RP-1303.bam 90507531333 BAM aligned CPTAC3 c3e4d20a-57c4-4565-9adc-20759fd796aa 7f4ae4dc2c80c7aeb01eb255b299f01e {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor"} -C3N-03889.WGS.T.hg38 C3N-03889 HNSCC WGS tumor CPT0222360006 2a60e9e0-aa78-4d9b-809e-f20eed6ce533_wgs_gdc_realn.bam 133224110405 BAM harmonized CPTAC3 acccaed4-dea6-42a8-b7a9-9af4a40609cc feea589cfd055b527b26321691ff8e12 {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor"} -C3N-03889.WXS.A C3N-03889 HNSCC WXS tissue_normal CPT0222380006 CPT0222380006.WholeExome.RP-1303.bam 19253594135 BAM aligned CPTAC3 1cd95fbc-f400-411c-b7f8-9f59fb2a1be1 29e8b6de8a2b976f90d52fe1e8d1d46e {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.WXS.A.hg38 C3N-03889 HNSCC WXS tissue_normal CPT0222380006 77d9175d-f4ce-4a4f-bdb2-5429bb899818_wxs_gdc_realn.bam 26153309117 BAM harmonized CPTAC3 6ed83515-c868-4174-af4f-004142c95c37 fc942bf42d5de966b24578bacf1e2f87 {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03889.WXS.N C3N-03889 HNSCC WXS blood_normal CPT0222470002 CPT0222470002.WholeExome.RP-1303.bam 47085806312 BAM aligned CPTAC3 1c65ad42-45e7-49e2-bad4-edaeab59cfbe 37c54596cb54ed661d7f29bde583be4e {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal"} -C3N-03889.WXS.N.hg38 C3N-03889 HNSCC WXS blood_normal CPT0222470002 f7210b31-9dd5-48f5-b101-dd58e93f7dc0_wxs_gdc_realn.bam 65096558616 BAM harmonized CPTAC3 d0d41824-27f6-49f0-afe2-5b8b74594d7b d3b0d9c89c38f217b78965c0d0098a67 {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal"} -C3N-03889.WXS.T C3N-03889 HNSCC WXS tumor CPT0222360006 CPT0222360006.WholeExome.RP-1303.bam 31557582836 BAM aligned CPTAC3 87ea4bc6-cc22-4df6-9302-99e853df90ed 0112494c593c84b1fd8e5477cf1d9e5e {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor"} -C3N-03889.WXS.T.hg38 C3N-03889 HNSCC WXS tumor CPT0222360006 2a60e9e0-aa78-4d9b-809e-f20eed6ce533_wxs_gdc_realn.bam 43406388856 BAM harmonized CPTAC3 4f8b99bd-49aa-472a-a6ce-797cda0cc9b6 fb785d3510f317545cd1676c5ffe3fb1 {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor"} -C3N-03890.MethArray.Green.A C3N-03890 LUAD Methylation_Array tissue_normal CPT0221380006 203561450017_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 37dbe7f7-833e-4f26-8321-a65b9bd4225e 373bddbc1ba54343ad69fefcae17b720 {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.MethArray.Green.T C3N-03890 LUAD Methylation_Array tumor CPT0221310006 203561450100_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0936358f-ec33-4462-88b6-12fcc89ffdb1 cf40e8499cb1b22484d5f2f05c7a4248 {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor"} -C3N-03890.MethArray.Red.A C3N-03890 LUAD Methylation_Array tissue_normal CPT0221380006 203561450017_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 24b63247-9b4a-4084-8cf8-df50026e6571 bdf4d294a943a7280c4a741ae0d5ac06 {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.MethArray.Red.T C3N-03890 LUAD Methylation_Array tumor CPT0221310006 203561450100_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 1eb92da9-d1f2-40f9-ab29-1a9c2cfbc9ac fdf3b51aef835cd05a034f81a8aa8319 {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor"} -C3N-03890.miRNA-Seq.A.hg38 C3N-03890 LUAD miRNA-Seq tissue_normal CPT0221380009 62c51923-643e-4aae-9c48-6c13dac1be39_mirnaseq_gdc_realn.bam 235313305 BAM harmonized CPTAC3 a4b8f018-a6ed-4bc5-99cd-6dd23b39ead9 95b080f6e427a7213da97aecaa954688 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.miRNA-Seq.S12_L007_R1.T C3N-03890 LUAD miRNA-Seq tumor CPT0221310009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCGTCC_S12_L007_R1_001.unaln.bam 161722924 BAM S12_L007_R1 unaligned CPTAC3 9d3aadc0-d369-4040-86fa-9524dfd16711 ec66f4e1a315805feddc11727e03c459 {"aliquot_tag": "ALQ_104b9838", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03890.miRNA-Seq.S41_L005_R1.A C3N-03890 LUAD miRNA-Seq tissue_normal CPT0221380009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATCACG_S41_L005_R1_001.unaln.bam 212054573 BAM S41_L005_R1 unaligned CPTAC3 0490b640-afee-445a-8f18-07eea29df62b 2647a35377cfd85498feabe50c975a5f {"aliquot_tag": "ALQ_1d5bfa49", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.miRNA-Seq.T.hg38 C3N-03890 LUAD miRNA-Seq tumor CPT0221310009 c450929c-3b2a-4495-91dd-a52cd6f2bf5b_mirnaseq_gdc_realn.bam 177514108 BAM harmonized CPTAC3 a0b6e533-7141-4c30-b920-b025825152a2 326bd6f0f6d1a9c0c49f3b12f1b9db69 {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor"} -C3N-03890.RNA-Seq.chimeric.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.chimeric.gdc_realn.bam 39929627 BAM chimeric harmonized CPTAC3 23c56b38-3d79-47a7-a02f-a0825fbde505 3ea0b203b09914f5a8d268f1e3f91eb1 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.RNA-Seq.chimeric.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.chimeric.gdc_realn.bam 28053030 BAM chimeric harmonized CPTAC3 e615b15a-69cb-417f-bb8d-e737aa13f146 61de9350a5654b33fb6137e96aea955c {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor"} -C3N-03890.RNA-Seq.genomic.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.genomic.gdc_realn.bam 13916360259 BAM genomic harmonized CPTAC3 71f9cb07-5d7d-44d8-a541-90e35d49ffde 585d557dab872eb00531a4527c7b75f4 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.RNA-Seq.genomic.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.genomic.gdc_realn.bam 9547444686 BAM genomic harmonized CPTAC3 54fb3d25-6d68-4b89-a6d9-5beb1b12de30 6402002f3cd692f4b458113b4e001ce1 {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor"} -C3N-03890.RNA-Seq.S23_L006_R1.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R1_001.fastq.gz 4773370680 FASTQ S23_L006_R1 unaligned CPTAC3 11ce8013-1cdf-4669-94a2-ba54b3b438bb 20205530ca128c6d9d86f01af77a3c9b {"aliquot_tag": "ALQ_1d5bfa49", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.RNA-Seq.S23_L006_R2.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R2_001.fastq.gz 5362843017 FASTQ S23_L006_R2 unaligned CPTAC3 da3734ae-be56-401f-bb22-b89c6fd0ff8b 00162898366b32f06f51878676a9c4ca {"aliquot_tag": "ALQ_1d5bfa49", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.RNA-Seq.S30_L008_R1.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R1_001.fastq.gz 3627021987 FASTQ S30_L008_R1 unaligned CPTAC3 aa2582cc-7725-4526-b8aa-7efbace71be6 cc335c33ac18a6543a107036676c564e {"aliquot_tag": "ALQ_104b9838", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03890.RNA-Seq.S30_L008_R2.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R2_001.fastq.gz 4024876278 FASTQ S30_L008_R2 unaligned CPTAC3 8cc02255-1420-4f2d-9cc8-9f3ffdc52225 a91ae6a94618d31e916f1ff1f4b940b2 {"aliquot_tag": "ALQ_104b9838", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03890.RNA-Seq.transcriptome.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.transcriptome.gdc_realn.bam 9813883645 BAM transcriptome harmonized CPTAC3 5a5eff19-12ea-4120-89af-a50dc1b3701a eaaa924b3465bdd94c37bd7ef8741187 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.RNA-Seq.transcriptome.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.transcriptome.gdc_realn.bam 7285341880 BAM transcriptome harmonized CPTAC3 6fe41965-a28f-456b-8543-ff3262493652 5a8ca94199f353cd485ed1ca625b7ecd {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor"} -C3N-03890.WGS.N C3N-03890 LUAD WGS blood_normal CPT0221560002 CPT0221560002.WholeGenome.RP-1303.bam 81732490427 BAM aligned CPTAC3 cc9cfe88-937d-45b5-8c56-ce4f2e39eaa2 a85d4791c6095adc1d266faa67225d73 {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03890.WGS.N.hg38 C3N-03890 LUAD WGS blood_normal CPT0221560002 7dd43c6c-2f91-4bec-92e4-be52d8a1700f_wgs_gdc_realn.bam 118835828080 BAM harmonized CPTAC3 dc291ec4-2f8d-4969-8c91-42fbdb5c0119 ac426b58d5d0db108e96d35ac9ec048b {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03890.WGS.T C3N-03890 LUAD WGS tumor CPT0221310006 CPT0221310006.WholeGenome.RP-1303.bam 76421517824 BAM aligned CPTAC3 11b43de6-fc0a-46a1-9ca6-87b917eab8fc a1c3a9acbf7e3dfd1dccde349f9572ab {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor"} -C3N-03890.WGS.T.hg38 C3N-03890 LUAD WGS tumor CPT0221310006 c22848a6-7e18-4fde-9152-978dd5539380_wgs_gdc_realn.bam 111598798427 BAM harmonized CPTAC3 f4bf91f0-ba76-459a-97c1-7c63ad7f8064 e8c20d697bf6d31ab0cde406d14ef63c {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor"} -C3N-03890.WXS.A C3N-03890 LUAD WXS tissue_normal CPT0221380006 CPT0221380006.WholeExome.RP-1303.bam 32067927633 BAM aligned CPTAC3 6bf33d52-d05d-4907-a2a2-b737b5b5837d 5df77e7aa453968294539a54d0c105ec {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.WXS.A.hg38 C3N-03890 LUAD WXS tissue_normal CPT0221380006 9df9095d-3a54-4ea5-8cb2-4f1ec94f3879_wxs_gdc_realn.bam 44810404043 BAM harmonized CPTAC3 cfc81860-4796-4c02-b701-c0bb904c93e9 f1406df8db90ef4bafb3f8ff88d533e0 {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03890.WXS.N C3N-03890 LUAD WXS blood_normal CPT0221560002 CPT0221560002.WholeExome.RP-1303.bam 30101789149 BAM aligned CPTAC3 f6c04c5a-805a-4622-81d2-c1ea0984d94d 402511d6d006c3bd13d94d8e24d4d964 {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03890.WXS.N.hg38 C3N-03890 LUAD WXS blood_normal CPT0221560002 7dd43c6c-2f91-4bec-92e4-be52d8a1700f_wxs_gdc_realn.bam 41173151278 BAM harmonized CPTAC3 4dc0daaf-2a6d-4918-9f70-5592541eb194 4e4b98910c5e9d654f9deb028b333a56 {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal"} -C3N-03890.WXS.T C3N-03890 LUAD WXS tumor CPT0221310006 CPT0221310006.WholeExome.RP-1303.bam 21994802547 BAM aligned CPTAC3 97073996-e510-413e-9223-be2955d4839a 27f8db1d09bc7a33012b2488f6fe86fc {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor"} -C3N-03890.WXS.T.hg38 C3N-03890 LUAD WXS tumor CPT0221310006 c22848a6-7e18-4fde-9152-978dd5539380_wxs_gdc_realn.bam 29930381827 BAM harmonized CPTAC3 9b5f226b-2ff4-4eef-aba1-f9c3e8e16a73 e12ea3b99fcbc30dabb8d4979f5d96b2 {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor"} -C3N-03911.MethArray.Green.A C3N-03911 LUAD Methylation_Array tissue_normal CPT0223640009 203561620091_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 580a0d43-9ffb-467c-9ae3-4c2820a1ad0c f6a3db1e48e751b7335af8544b52c05e {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.MethArray.Green.T C3N-03911 LUAD Methylation_Array tumor CPT0223610006 203561450017_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ad89f742-66fb-4071-814f-5f69e1b2b85d cf85722d15b59ae1ba895cbb521ba887 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor"} -C3N-03911.MethArray.Red.A C3N-03911 LUAD Methylation_Array tissue_normal CPT0223640009 203561620091_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 28dd0c30-e531-4b0c-b212-f426af14931c efe10c37514293f2c1b1fce08d070326 {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.MethArray.Red.T C3N-03911 LUAD Methylation_Array tumor CPT0223610006 203561450017_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 c35c9219-a2af-490f-b97d-0385649fcc79 5b7ef0c565705bb5d18c901a80ec2f20 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor"} -C3N-03911.miRNA-Seq.A.hg38 C3N-03911 LUAD miRNA-Seq tissue_normal CPT0223640006 a3bd6655-2ce2-4eb3-b10c-22dae5b754ce_mirnaseq_gdc_realn.bam 196498005 BAM harmonized CPTAC3 c16019cd-77c6-46fe-940d-fd5f367f5274 c3a14275cd78df840ff0fca0c9973d7f {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.miRNA-Seq.S14_L007_R1.A C3N-03911 LUAD miRNA-Seq tissue_normal CPT0223640006 190722_UNC31-K00269_0234_AH7VGTBBXY_GTCCGC_S14_L007_R1_001.unaln.bam 171833977 BAM S14_L007_R1 unaligned CPTAC3 647dcc2e-913b-4676-b47e-2af6c55f51ed e71c4033dc580ee69657fd566fb8a02c {"aliquot_tag": "ALQ_8f468a43", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.miRNA-Seq.S26_L004_R1.T C3N-03911 LUAD miRNA-Seq tumor CPT0223610009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACTCA_S26_L004_R1_001.unaln.bam 247283715 BAM S26_L004_R1 unaligned CPTAC3 ed3ef7be-8630-472b-9d30-d325b9c9bd62 242e6af4977e36fd2a685c8b752941b3 {"aliquot_tag": "ALQ_d71918a2", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03911.miRNA-Seq.T.hg38 C3N-03911 LUAD miRNA-Seq tumor CPT0223610009 ff2741b1-bd2d-4437-8421-629a53b19b6c_mirnaseq_gdc_realn.bam 278278728 BAM harmonized CPTAC3 6d83cd1b-ff37-437c-b330-84c557600d5e 8d0edd8c934a65d1ed3d50a624a640b9 {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor"} -C3N-03911.RNA-Seq.chimeric.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.chimeric.gdc_realn.bam 26028369 BAM chimeric harmonized CPTAC3 ed96b321-0dcf-42e2-821f-ffb726f355b5 49cb6f3bd78645da0ab53d4f13fd51c0 {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.RNA-Seq.chimeric.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.chimeric.gdc_realn.bam 40900399 BAM chimeric harmonized CPTAC3 f65dff08-8324-4cbd-a0d3-ec7862645d2b ac06477b83698cc833366edd1a83b059 {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor"} -C3N-03911.RNA-Seq.genomic.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.genomic.gdc_realn.bam 9529977879 BAM genomic harmonized CPTAC3 32da2cc3-b99f-4c09-8314-caf9d42fb28d e2a47ef5ccd1c620c0dec9563cd0e6d2 {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.RNA-Seq.genomic.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.genomic.gdc_realn.bam 14943562001 BAM genomic harmonized CPTAC3 40de78a4-3c9e-4488-bff6-556dddbb51d2 963bc9f78f5036811eca60b6ab9b605c {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor"} -C3N-03911.RNA-Seq.S28_L007_R1.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R1_001.fastq.gz 5205141169 FASTQ S28_L007_R1 unaligned CPTAC3 98425bec-6e8e-4116-9059-200a44880bd3 17983b0086309b8aba0c74e1e067928f {"aliquot_tag": "ALQ_d71918a2", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03911.RNA-Seq.S28_L007_R2.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R2_001.fastq.gz 5733156960 FASTQ S28_L007_R2 unaligned CPTAC3 ee3fa35f-834a-4a2e-be95-6700b485b7fd 9ce9586faa9d9c2e2a114d6d981f7ed7 {"aliquot_tag": "ALQ_d71918a2", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03911.RNA-Seq.S32_L008_R1.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R1_001.fastq.gz 3394815688 FASTQ S32_L008_R1 unaligned CPTAC3 926f1f32-f11b-48f4-ba04-a70f3d66a3d6 f3073f51ac9033cfdc7f079b18807b16 {"aliquot_tag": "ALQ_8f468a43", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.RNA-Seq.S32_L008_R2.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R2_001.fastq.gz 3902481764 FASTQ S32_L008_R2 unaligned CPTAC3 84fc593b-48ad-4e4b-bc97-9e6432fa21ea b73bd5c9b4dd722d0a64a689426c876d {"aliquot_tag": "ALQ_8f468a43", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.RNA-Seq.transcriptome.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.transcriptome.gdc_realn.bam 8022797660 BAM transcriptome harmonized CPTAC3 fb91c457-4fd7-4aab-8fc9-911dc15059ef 716cfc7c3e8fb7b40e5d1eebff5ceaca {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.RNA-Seq.transcriptome.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.transcriptome.gdc_realn.bam 13067933414 BAM transcriptome harmonized CPTAC3 70592869-e23b-4c3e-b3e0-dfc023638a94 f1ca5cf59218b98065b6ed0e3de53f4b {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor"} -C3N-03911.WGS.N C3N-03911 LUAD WGS blood_normal CPT0223730002 CPT0223730002.WholeGenome.RP-1303.bam 67350523077 BAM aligned CPTAC3 97bbd555-86dc-40c6-9cd0-c4c0628f1569 a299da55405fc8485ace67b36d3eac32 {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-03911.WGS.N.hg38 C3N-03911 LUAD WGS blood_normal CPT0223730002 db2d715b-de33-4265-9e4f-6b6d06bbcf77_wgs_gdc_realn.bam 98466515208 BAM harmonized CPTAC3 42cd263e-ee58-4d10-bd75-8437810ef8db edde4b809a6876cdd30761cd37eeb362 {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-03911.WGS.T C3N-03911 LUAD WGS tumor CPT0223610006 CPT0223610006.WholeGenome.RP-1303.bam 52525817199 BAM aligned CPTAC3 93735a47-615f-4744-a4a9-b4d847aa56a4 ca2a147d0eb8a36e4bfb98733d9e27a2 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor"} -C3N-03911.WGS.T.hg38 C3N-03911 LUAD WGS tumor CPT0223610006 cded8a7e-8a15-41a0-adbc-3816ad38d1a6_wgs_gdc_realn.bam 77637613042 BAM harmonized CPTAC3 514ce22b-f01c-445f-afd2-cb3e5732451e 45cc7cc2a84aa3bdcb7200a3f04fb48e {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor"} -C3N-03911.WXS.A C3N-03911 LUAD WXS tissue_normal CPT0223640009 CPT0223640009.WholeExome.RP-1303.bam 28060130026 BAM aligned CPTAC3 6cd48d71-280f-40a9-986e-f60bb04f8522 d23bf43a215f764d76345df95e580d62 {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.WXS.A.hg38 C3N-03911 LUAD WXS tissue_normal CPT0223640009 775b90da-d190-41e7-b19f-5d43d5dddc33_wxs_gdc_realn.bam 39107438454 BAM harmonized CPTAC3 d885c01b-958b-4ab0-97dc-b3b1d7905ad7 d06e31677969b6a321561473ac4a9c71 {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03911.WXS.N C3N-03911 LUAD WXS blood_normal CPT0223730002 CPT0223730002.WholeExome.RP-1303.bam 27710530135 BAM aligned CPTAC3 5a49e65f-800f-4f0f-a5c0-bf1e9b83147f 1687460c70eb6c2eccb6ef5e0ece91b6 {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-03911.WXS.N.hg38 C3N-03911 LUAD WXS blood_normal CPT0223730002 db2d715b-de33-4265-9e4f-6b6d06bbcf77_wxs_gdc_realn.bam 38178162479 BAM harmonized CPTAC3 9c23156c-40b6-490b-a21f-6af4d6646f89 9a6598f1f87515692ddbeb2c8b7c819f {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal"} -C3N-03911.WXS.T C3N-03911 LUAD WXS tumor CPT0223610006 CPT0223610006.WholeExome.RP-1303.bam 30791088843 BAM aligned CPTAC3 66ce1f69-24e8-4ea9-90f0-7bcbbe426d3f 299ec3d5326f917b29d1bb238bb7cd38 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor"} -C3N-03911.WXS.T.hg38 C3N-03911 LUAD WXS tumor CPT0223610006 cded8a7e-8a15-41a0-adbc-3816ad38d1a6_wxs_gdc_realn.bam 41580983977 BAM harmonized CPTAC3 d591f52c-a038-45c5-967a-d21e5e0512b0 87bdc8c20a50d18abc520876d12857ca {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor"} -C3N-03921.MethArray.Green.A C3N-03921 LUAD Methylation_Array tissue_normal CPT0223280006 203561620064_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 6b081f18-298b-43b8-9742-bf971330da06 0278a1ec04760958ff43bd97c49f016a {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.MethArray.Green.T C3N-03921 LUAD Methylation_Array tumor CPT0223260006 203561450018_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c094bec8-9c06-44df-8826-d7051b8185b2 1f681b80b8821e8c29ced8d308184d51 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor"} -C3N-03921.MethArray.Red.A C3N-03921 LUAD Methylation_Array tissue_normal CPT0223280006 203561620064_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 ab1fc338-7329-4011-a469-f565c66b2204 9edae40fc67947a9797bcfc02af676cb {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.MethArray.Red.T C3N-03921 LUAD Methylation_Array tumor CPT0223260006 203561450018_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 1d3ce52a-4940-4044-b5f9-a1141545cad4 d8e99841e6d48c291ef31e53a12cf8ea {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor"} -C3N-03921.miRNA-Seq.A.hg38 C3N-03921 LUAD miRNA-Seq tissue_normal CPT0223280009 eb98f7d1-d002-46b3-8276-1fac3538f6c1_mirnaseq_gdc_realn.bam 290854687 BAM harmonized CPTAC3 b4209503-995c-4572-82d9-684fbc338b21 8cf4866d03900d16f63eef61053c83c2 {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.miRNA-Seq.S13_L007_R1.T C3N-03921 LUAD miRNA-Seq tumor CPT0223260009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTAGAG_S13_L007_R1_001.unaln.bam 178601708 BAM S13_L007_R1 unaligned CPTAC3 4a37b01b-4ddb-4431-9eec-f20c9fe54824 dd17325589c1b2465a0b26def2b1adbe {"aliquot_tag": "ALQ_fea886a4", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03921.miRNA-Seq.S42_L005_R1.A C3N-03921 LUAD miRNA-Seq tissue_normal CPT0223280009 190722_UNC31-K00269_0234_AH7VGTBBXY_CGATGT_S42_L005_R1_001.unaln.bam 259657420 BAM S42_L005_R1 unaligned CPTAC3 7b4190b1-0fa7-4ac3-8816-43568a603dd1 232942681ec6d0c7ca1a82c96c50a327 {"aliquot_tag": "ALQ_419838c5", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.miRNA-Seq.T.hg38 C3N-03921 LUAD miRNA-Seq tumor CPT0223260009 bb417eb3-e59d-44ed-a7a9-6294c94c4a69_mirnaseq_gdc_realn.bam 196094028 BAM harmonized CPTAC3 a7988fb9-65fe-4623-83af-ce689c458ed5 947f24bcf9d461b2855d9a862cd4e94a {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor"} -C3N-03921.RNA-Seq.chimeric.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.chimeric.gdc_realn.bam 44027776 BAM chimeric harmonized CPTAC3 6bca6c95-cc4c-48da-9354-7d1e2d4a6925 7d4bcca24c8d948e2b1dd21da858e7cc {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.RNA-Seq.chimeric.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.chimeric.gdc_realn.bam 35423904 BAM chimeric harmonized CPTAC3 1ff55b2f-23f7-44b6-a1c6-ec92549e44ee 6044223f1c28395fec2408eb3300e866 {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor"} -C3N-03921.RNA-Seq.genomic.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.genomic.gdc_realn.bam 13407903930 BAM genomic harmonized CPTAC3 3d77009d-409b-45f0-8d5f-5cdcbe7a4c0f 986495fd3f6f1ee01f65f704f7e3f259 {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.RNA-Seq.genomic.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.genomic.gdc_realn.bam 12501241921 BAM genomic harmonized CPTAC3 e3dee240-24d4-4a74-b23b-7d36f86cbfae e007aff8f38403ed74b1284288fcbf4e {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor"} -C3N-03921.RNA-Seq.S22_L006_R1.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R1_001.fastq.gz 4759625511 FASTQ S22_L006_R1 unaligned CPTAC3 367ab8a5-931b-41d4-9144-ae59e09b9c0a 972900174e5c4c17356a868e26d81596 {"aliquot_tag": "ALQ_419838c5", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.RNA-Seq.S22_L006_R2.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R2_001.fastq.gz 4906699320 FASTQ S22_L006_R2 unaligned CPTAC3 77fac69d-a38b-4b26-8928-d9385eae7070 e90dab656fbac7b34a002ec76fd70a9e {"aliquot_tag": "ALQ_419838c5", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.RNA-Seq.S31_L008_R1.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R1_001.fastq.gz 4740602776 FASTQ S31_L008_R1 unaligned CPTAC3 7881cf5e-17a2-412c-ad03-c1738c003666 ee69d2111bd851c723ef43a41e624fae {"aliquot_tag": "ALQ_fea886a4", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03921.RNA-Seq.S31_L008_R2.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R2_001.fastq.gz 5200451436 FASTQ S31_L008_R2 unaligned CPTAC3 1b90d3b5-254f-4f2e-83b2-aa2d5cd5d654 1ce0915f56da3450cd8cbb0c948a900a {"aliquot_tag": "ALQ_fea886a4", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03921.RNA-Seq.transcriptome.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.transcriptome.gdc_realn.bam 9788432401 BAM transcriptome harmonized CPTAC3 c2878bde-0da1-4458-871e-3978886c8715 aec05eae1bc6c3803c8e2e649c7226a4 {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.RNA-Seq.transcriptome.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.transcriptome.gdc_realn.bam 10869984062 BAM transcriptome harmonized CPTAC3 f39d42fe-9006-49ad-b54b-c560c918b8ca 91b050c8ff48e34eaa1465353cb6a5d3 {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor"} -C3N-03921.WGS.N C3N-03921 LUAD WGS blood_normal CPT0223370002 CPT0223370002.WholeGenome.RP-1303.bam 57889869359 BAM aligned CPTAC3 c5069d8b-dc94-4176-b2ec-78c98c0f9efa 7e9bb5ad60f1c6d8dad633a9b3c98d93 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal"} -C3N-03921.WGS.N.hg38 C3N-03921 LUAD WGS blood_normal CPT0223370002 999fc728-4e24-4737-9daf-55eb19ded472_wgs_gdc_realn.bam 82731236019 BAM harmonized CPTAC3 e35a5b94-ed10-489e-81eb-fe73e8229013 5169e9b5d0e09d42f297a30da19be599 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal"} -C3N-03921.WGS.T C3N-03921 LUAD WGS tumor CPT0223260006 CPT0223260006.WholeGenome.RP-1303.bam 70561800278 BAM aligned CPTAC3 420b4a4a-4d81-406b-8eea-b5276fd7a58c 66bcac0fb03387fcfbb510b3d708d2db {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor"} -C3N-03921.WGS.T.hg38 C3N-03921 LUAD WGS tumor CPT0223260006 56ede771-6ddf-4dd2-9672-f93767b5a999_wgs_gdc_realn.bam 103196870105 BAM harmonized CPTAC3 be3f4887-19e5-4dea-8d27-ec6c573d5571 70a96e36d412ba3aae3369a1b1a78171 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor"} -C3N-03921.WXS.A C3N-03921 LUAD WXS tissue_normal CPT0223280006 CPT0223280006.WholeExome.RP-1303.bam 17595055772 BAM aligned CPTAC3 618dd0f3-99d6-4c41-8592-099eeadbf8d6 eb431723f2e9a209be2d6f7d23b3836b {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.WXS.A.hg38 C3N-03921 LUAD WXS tissue_normal CPT0223280006 6756ff0a-8cd7-4aba-8314-c455596b6261_wxs_gdc_realn.bam 24286975574 BAM harmonized CPTAC3 a1aef3de-7470-4407-a44d-6fb1183671a4 a9fdfe9fab62a0f6b9c3e494268c966f {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03921.WXS.N C3N-03921 LUAD WXS blood_normal CPT0223370002 CPT0223370002.WholeExome.RP-1303.bam 29183959659 BAM aligned CPTAC3 85e1e682-7133-4edc-a10f-5884057c39fc e6827a27a6006f845de7294c905311a2 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal"} -C3N-03921.WXS.N.hg38 C3N-03921 LUAD WXS blood_normal CPT0223370002 999fc728-4e24-4737-9daf-55eb19ded472_wxs_gdc_realn.bam 40314924869 BAM harmonized CPTAC3 9a4642cf-f64a-4d95-9593-2dbeb3aeca4d b86fef293698ff44d7077537f462df85 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal"} -C3N-03921.WXS.T C3N-03921 LUAD WXS tumor CPT0223260006 CPT0223260006.WholeExome.RP-1303.bam 21567516235 BAM aligned CPTAC3 8261d0d6-7719-486e-b781-b035d14ec16e 323675b40d0fe3d0f9062b348584a054 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor"} -C3N-03921.WXS.T.hg38 C3N-03921 LUAD WXS tumor CPT0223260006 56ede771-6ddf-4dd2-9672-f93767b5a999_wxs_gdc_realn.bam 29769490833 BAM harmonized CPTAC3 1418c58e-bf2c-43ad-9dfb-25559a91637c 4b6273ed97183b0158d41f315f3e3687 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor"} -C3N-03923.MethArray.Green.A C3N-03923 LSCC Methylation_Array tissue_normal CPT0256410006 204372030072_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 89a36f19-defd-4b12-a325-fa0e083bd6b1 af9fe48736f372d90e5a4ee5ea411e3b {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.MethArray.Green.T C3N-03923 LSCC Methylation_Array tumor CPT0256400006 204372030071_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 1dc256e4-9e4c-4b14-a58a-4c0925813608 077d8963b1d777a3648cbb364ab66651 {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor"} -C3N-03923.MethArray.Red.A C3N-03923 LSCC Methylation_Array tissue_normal CPT0256410006 204372030072_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 5a897a9c-2417-42e5-a391-ba9a0224d4b7 b3cda4f87822b3f5de62abcafab67a4e {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.MethArray.Red.T C3N-03923 LSCC Methylation_Array tumor CPT0256400006 204372030071_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 f06641c6-cb4f-40b2-9156-d43d7aa64d03 dbcaa087f2172c63380c0f8518080e40 {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor"} -C3N-03923.miRNA-Seq.A.hg38 C3N-03923 LSCC miRNA-Seq tissue_normal CPT0256410009 e3adc27c-befd-4dd9-bcdd-ab2f292f450b_mirnaseq_gdc_realn.bam 289685102 BAM harmonized CPTAC3 adbb2fb7-5245-4239-ad48-470a581284e0 d581b416706bd97cd0b6054a9ef8bbd8 {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.miRNA-Seq.S15_L007_R1.A C3N-03923 LSCC miRNA-Seq tissue_normal CPT0256410009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGCTAC_S15_L007_R1_001.unaln.bam 255275659 BAM S15_L007_R1 unaligned CPTAC3 f09f422a-3c94-4a5e-b207-6cb65a08eb3c 782ccc0c4c050817b562975a66fc0960 {"aliquot_tag": "ALQ_c22c9f17", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.miRNA-Seq.S19_L007_R1.T C3N-03923 LSCC miRNA-Seq tumor CPT0256400013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGAAA_S19_L007_R1_001.unaln.bam 229732290 BAM S19_L007_R1 unaligned CPTAC3 5cf50621-f395-4671-aafe-515f039a7b4f e83c931c872e86048e8c487f11c06fef {"aliquot_tag": "ALQ_6826ef8", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03923.miRNA-Seq.T.hg38 C3N-03923 LSCC miRNA-Seq tumor CPT0256400013 6e4d0579-0295-48b1-af3c-b7b5279a15af_mirnaseq_gdc_realn.bam 257360022 BAM harmonized CPTAC3 a4545431-007f-4335-a7bb-ea1fde57573f 0b4e31eab37ab0d08393306c030e2ed4 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor"} -C3N-03923.RNA-Seq.chimeric.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.chimeric.gdc_realn.bam 81573846 BAM chimeric harmonized CPTAC3 238af855-75f5-4e54-a402-78e089387245 215b926eb820f448c5492907f5b40272 {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.RNA-Seq.chimeric.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.chimeric.gdc_realn.bam 111146283 BAM chimeric harmonized CPTAC3 c08c09d4-236d-4c7c-a381-5b3b9f2de70b ea042a13261497be523c60fc04b00448 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor"} -C3N-03923.RNA-Seq.genomic.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.genomic.gdc_realn.bam 6717430392 BAM genomic harmonized CPTAC3 d98f530d-a7de-40b5-9dda-a279b75c0ef0 2dc8cbdb718bccdc608d99e80e7fe241 {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.RNA-Seq.genomic.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.genomic.gdc_realn.bam 8648889274 BAM genomic harmonized CPTAC3 090c845c-1364-4801-96a8-d4c2a4e5e2bf 69d18f76fb171f5bbb516e078353b1a8 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor"} -C3N-03923.RNA-Seq.S11_L003_R1.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R1_001.fastq.gz 3205216925 FASTQ S11_L003_R1 unaligned CPTAC3 57455e4c-b3e0-42e8-b777-7b62a4e7ee1c 7dc25e8c92dd7a54632ac0b94140a9d4 {"aliquot_tag": "ALQ_c22c9f17", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.RNA-Seq.S11_L003_R2.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R2_001.fastq.gz 3557318303 FASTQ S11_L003_R2 unaligned CPTAC3 cbbe8629-44f7-4ad4-9386-0070b1995efe c103a56b60614a8574aac694649a040c {"aliquot_tag": "ALQ_c22c9f17", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.RNA-Seq.S20_L005_R1.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4258161393 FASTQ S20_L005_R1 unaligned CPTAC3 1472ec3e-ccbe-4215-96fe-fed9126c9492 f84f508a8faae228e311adc5d94643bc {"aliquot_tag": "ALQ_6826ef8", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03923.RNA-Seq.S20_L005_R2.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4751061138 FASTQ S20_L005_R2 unaligned CPTAC3 b0051816-8cfc-4fc9-bff8-e02a112a6740 bf076ecb443ecf800cb547b430234ec8 {"aliquot_tag": "ALQ_6826ef8", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03923.RNA-Seq.transcriptome.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.transcriptome.gdc_realn.bam 8327787486 BAM transcriptome harmonized CPTAC3 2d88c119-6a4a-4887-8117-886f1cd8e29e 9ee17e87f10a9ddadcb1a3d864b7c59e {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.RNA-Seq.transcriptome.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.transcriptome.gdc_realn.bam 10204617976 BAM transcriptome harmonized CPTAC3 464a1c8e-b3c2-40ed-8c8d-10311c2b7271 15497f7b34dff25c1a3dbf6b849570f4 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor"} -C3N-03923.WGS.N C3N-03923 LSCC WGS blood_normal CPT0256500002 CPT0256500002.WholeGenome.RP-2158.bam 22952793307 BAM aligned CPTAC3 c1e957ff-ee81-4d7f-bc37-674de50806bc 9132c33222f896c8f20e05a1639de98e {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03923.WGS.N.hg38 C3N-03923 LSCC WGS blood_normal CPT0256500002 5b4a4a97-1ca6-43c7-ae59-d4de15fcbd74_wgs_gdc_realn.bam 68819258297 BAM harmonized CPTAC3 d0933bbc-e62a-41b2-bd12-be1d63e53836 33d4e4f4bdfbcbfc62cd696e0ca787f8 {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03923.WGS.T C3N-03923 LSCC WGS tumor CPT0256400006 CPT0256400006.WholeGenome.RP-2158.bam 22798062723 BAM aligned CPTAC3 94131131-3a7c-437c-ac22-997e893751c2 08f681135fd003c5134499bb6b6b50ab {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor"} -C3N-03923.WGS.T.hg38 C3N-03923 LSCC WGS tumor CPT0256400006 3df344f8-a667-4995-baf0-ea7725ad0ea9_wgs_gdc_realn.bam 67557684957 BAM harmonized CPTAC3 fdf76f02-3f94-4907-964d-b082cbb0af56 7a394152ec35ead3f64c4fb6c0f9320d {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor"} -C3N-03923.WXS.A C3N-03923 LSCC WXS tissue_normal CPT0256410006 CPT0256410006.WholeExome.RP-1303.bam 22572298048 BAM aligned CPTAC3 7d1cae39-ab67-4d63-86a1-cb25aecccbb5 03acd97467bd94003e1cbc61737f94ec {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.WXS.A.hg38 C3N-03923 LSCC WXS tissue_normal CPT0256410006 4b5d3a39-6385-4946-86fb-0260a4d48d78_wxs_gdc_realn.bam 31514324064 BAM harmonized CPTAC3 1174bc58-daaf-4750-aa3d-98ddd7a57475 5c72567fd99063811ec610e2612a1029 {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03923.WXS.N C3N-03923 LSCC WXS blood_normal CPT0256500002 CPT0256500002.WholeExome.RP-1303.bam 26709559638 BAM aligned CPTAC3 d95b9ef8-98af-4dd9-8ad6-8f8964706d29 89b814a464c1a25dd3ea78e87815f337 {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03923.WXS.N.hg38 C3N-03923 LSCC WXS blood_normal CPT0256500002 5b4a4a97-1ca6-43c7-ae59-d4de15fcbd74_wxs_gdc_realn.bam 36096282529 BAM harmonized CPTAC3 f3455f5c-25a4-4fa3-bbfa-43bb9acec2f0 be44d73d297fa92b371f280c872aa940 {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal"} -C3N-03923.WXS.T C3N-03923 LSCC WXS tumor CPT0256400006 CPT0256400006.WholeExome.RP-1303.bam 25512003165 BAM aligned CPTAC3 849427c8-f58f-4ee0-98e3-b2ae43f8179e 8129b25534331b40c6ccb109a70d6794 {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor"} -C3N-03923.WXS.T.hg38 C3N-03923 LSCC WXS tumor CPT0256400006 3df344f8-a667-4995-baf0-ea7725ad0ea9_wxs_gdc_realn.bam 35363917034 BAM harmonized CPTAC3 614f6f2f-f729-4528-ac6e-1fb1df9c2267 e855b699e90960246302bd9f93ff855e {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor"} -C3N-03928.MethArray.Green.A C3N-03928 HNSCC Methylation_Array tissue_normal CPT0223460006 203220070102_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 0bfa815b-fc94-4834-9efd-279e0129fec6 624cbcf3ec9cbe8ccdb5f0f743fce6df {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.MethArray.Green.T C3N-03928 HNSCC Methylation_Array tumor CPT0223450006 203273200110_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 74496499-c1c8-43d0-b15c-0943dea120b2 153bea1be2ff9cbdc1193c33218d5a4e {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor"} -C3N-03928.MethArray.Red.A C3N-03928 HNSCC Methylation_Array tissue_normal CPT0223460006 203220070102_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 07557c2c-b92c-4f9a-8417-5cb3ce6df372 22924998508f36f11605d62d14e5f9e7 {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.MethArray.Red.T C3N-03928 HNSCC Methylation_Array tumor CPT0223450006 203273200110_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 2b0b7dfe-d652-4747-841d-9bac98c23be8 ee176fd47ed36c4f84031dda04424997 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor"} -C3N-03928.miRNA-Seq.A.hg38 C3N-03928 HNSCC miRNA-Seq tissue_normal CPT0223460009 872fb158-087c-4c4f-ab76-91b7fe4d34df_mirnaseq_gdc_realn.bam 227418641 BAM harmonized CPTAC3 be6c74d0-de04-455e-a675-09bd3b90cdb4 d02b4aebb70b88006df0c4e50495d5b4 {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.miRNA-Seq.S12_L005_R1.A C3N-03928 HNSCC miRNA-Seq tissue_normal CPT0223460009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L005_R1_001.unaln.bam 196630361 BAM S12_L005_R1 unaligned CPTAC3 7015611f-ef8f-453e-82e5-41b06e620714 969b21b28cabfa91546942f328668bd8 {"aliquot_tag": "ALQ_28f165b9", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.miRNA-Seq.S28_L004_R1.T C3N-03928 HNSCC miRNA-Seq tumor CPT0223450009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L004_R1_001.unaln.bam 209255730 BAM S28_L004_R1 unaligned CPTAC3 f07e9d37-38ad-437c-bc1b-d44e00a705f6 548ea5cc520bc42636925779a99b0086 {"aliquot_tag": "ALQ_6f511f69", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03928.miRNA-Seq.T.hg38 C3N-03928 HNSCC miRNA-Seq tumor CPT0223450009 e740f8e4-61be-4c70-82b6-5bd6255dbb68_mirnaseq_gdc_realn.bam 231339187 BAM harmonized CPTAC3 081fd7ec-e69d-4f37-9daa-e83d00b6b672 5fc5420c801011ffa9ce31683733471f {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.chimeric.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.chimeric.gdc_realn.bam 43989295 BAM chimeric harmonized CPTAC3 e3171348-b14c-45a2-8523-d6ca26b7b916 233004d359356919f1b9178d1292cdd2 {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.RNA-Seq.chimeric.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.chimeric.gdc_realn.bam 213902410 BAM chimeric harmonized CPTAC3 76ae54cd-86e2-4937-aad3-f90e0f0ae25b a22b54d8007713ff2d3bbb2548b8c2ba {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.chimeric.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.chimeric.gdc_realn.bam 6854951 BAM chimeric harmonized CPTAC3 ff1405a8-916a-436d-a6aa-d73e1018359b 35de8a786424ec2e745f9c4654828b73 {"aliquot_tag": "ALQ_bd614b1b", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.genomic.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.genomic.gdc_realn.bam 8542541691 BAM genomic harmonized CPTAC3 0d8ed636-a303-4fcc-9bba-eec95d558e16 c417f464de43e0416f603c1bb22c03fd {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.RNA-Seq.genomic.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.genomic.gdc_realn.bam 8153597747 BAM genomic harmonized CPTAC3 6529a0cd-9bef-48a2-b94b-a19a5c878119 740d1976e038d29d5abcda4948d36451 {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.genomic.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.genomic.gdc_realn.bam 5238124945 BAM genomic harmonized CPTAC3 93748b45-89d1-4f0c-8250-24d3367a0389 53d8031938205388f913acd18c047394 {"aliquot_tag": "ALQ_bd614b1b", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.S16_L004_R1.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3837025506 FASTQ S16_L004_R1 unaligned CPTAC3 0176e888-4ebb-4a42-b6a4-67c44c5fb1c8 d17bc447e8808d00dbd3b1e8cb8eb47f {"aliquot_tag": "ALQ_6f511f69", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.S16_L004_R2.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R2_001.fastq.gz 4113640477 FASTQ S16_L004_R2 unaligned CPTAC3 1a65fad3-3abe-471c-814d-e5857ef2953f db3233c6e3c50e8c77fba7ee3850c960 {"aliquot_tag": "ALQ_6f511f69", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.S16_R1.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R1_001.fastq.gz 2525598438 FASTQ S16_R1 unaligned CPTAC3 a05c6296-f275-4d3e-a4d8-80fdfaf285a4 81fe16bda6e7668c2a0ef7e032e17527 {"aliquot_tag": "ALQ_bd614b1b", "sample": "S16", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.S16_R2.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R2_001.fastq.gz 2612357568 FASTQ S16_R2 unaligned CPTAC3 0a5db27b-544d-478c-9328-80f8a8d6bffc c10bdcd90ddf9cc7354c01cf2e742c8b {"aliquot_tag": "ALQ_bd614b1b", "sample": "S16", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.S24_L005_R1.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R1_001.fastq.gz 4139135637 FASTQ S24_L005_R1 unaligned CPTAC3 47a58947-9f20-4cb8-9b63-3592510547d2 586b748c1ee8d907d4d84c0f067a1507 {"aliquot_tag": "ALQ_28f165b9", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.RNA-Seq.S24_L005_R2.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R2_001.fastq.gz 4660118469 FASTQ S24_L005_R2 unaligned CPTAC3 a09dca26-cf2b-4011-9547-39040fa13483 1860e4760d7c3b36c49db75d9a21b553 {"aliquot_tag": "ALQ_28f165b9", "sample": "S24", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.RNA-Seq.transcriptome.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.transcriptome.gdc_realn.bam 12563867397 BAM transcriptome harmonized CPTAC3 323a0cdb-027b-40fc-b7ae-0bddd2ec541b 5fc97b397edda29959afb278e0ef1d5c {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.RNA-Seq.transcriptome.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.transcriptome.gdc_realn.bam 11147226211 BAM transcriptome harmonized CPTAC3 520aa9ac-ee05-426e-b4f6-f85470552268 7ce63b085117437dc78181ebc76c5cdf {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor"} -C3N-03928.RNA-Seq.transcriptome.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.transcriptome.gdc_realn.bam 4135179406 BAM transcriptome harmonized CPTAC3 142f4c1a-dc84-47e1-b934-bb4e566ccadb 2d4ca23abdca0b1452d323fdb2a5caaf {"aliquot_tag": "ALQ_bd614b1b", "gdc_sample_type": "Primary Tumor"} -C3N-03928.WGS.N C3N-03928 HNSCC WGS blood_normal CPT0223550002 CPT0223550002.WholeGenome.RP-1303.bam 63920687389 BAM aligned CPTAC3 e53b0336-cc04-4e09-9e65-20f6f7920980 bbe2d3c4421a108074f35c7d0eb9bdbc {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal"} -C3N-03928.WGS.N.hg38 C3N-03928 HNSCC WGS blood_normal CPT0223550002 d52c7050-d9d6-4c27-941d-49f3c0986bc7_wgs_gdc_realn.bam 91894127964 BAM harmonized CPTAC3 3b342f53-0196-4733-b37b-74d26d87db26 2e88298d309f7989a45c535d87fa9dc2 {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal"} -C3N-03928.WGS.T C3N-03928 HNSCC WGS tumor CPT0223450006 CPT0223450006.WholeGenome.RP-1303.bam 83995772319 BAM aligned CPTAC3 1956ec9f-f220-4486-b2f5-847f977d3b2e b407f1bf64cc6acb13b953b39f5648d3 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor"} -C3N-03928.WGS.T.hg38 C3N-03928 HNSCC WGS tumor CPT0223450006 fc99dc77-db87-43ef-b266-6becf5869734_wgs_gdc_realn.bam 126290974495 BAM harmonized CPTAC3 7199f9f9-dd7f-4af7-b471-09fd580fb125 c8d33e0db690633fd0fb3b92372528b4 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor"} -C3N-03928.WXS.A C3N-03928 HNSCC WXS tissue_normal CPT0223460006 CPT0223460006.WholeExome.RP-1303.bam 40235827139 BAM aligned CPTAC3 2d06eac9-88d9-4ee6-ab63-5cdcd18c9c1d 08a7254630a8a0606a9c37ad183a3258 {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.WXS.A.hg38 C3N-03928 HNSCC WXS tissue_normal CPT0223460006 4b727f9a-29bf-4d64-831f-df8120917efe_wxs_gdc_realn.bam 56097963253 BAM harmonized CPTAC3 04701dc7-6330-4b7f-a8d3-1f15d2a7168b 4d71288f1cad76b3068abf71a2dd7af9 {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03928.WXS.N C3N-03928 HNSCC WXS blood_normal CPT0223550002 CPT0223550002.WholeExome.RP-1303.bam 20817807563 BAM aligned CPTAC3 d487fef9-7e4b-471a-b2f7-f97b915b4b95 806f9177eda74bdf2cd94ece05f26c19 {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal"} -C3N-03928.WXS.N.hg38 C3N-03928 HNSCC WXS blood_normal CPT0223550002 d52c7050-d9d6-4c27-941d-49f3c0986bc7_wxs_gdc_realn.bam 28568849149 BAM harmonized CPTAC3 889badd3-da9b-4f72-8682-a2cca8f38106 866054967eca6330efbcfdcd0fc59e70 {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal"} -C3N-03928.WXS.T C3N-03928 HNSCC WXS tumor CPT0223450006 CPT0223450006.WholeExome.RP-1303.bam 25583853036 BAM aligned CPTAC3 18bd0fbf-3f94-4e84-92d8-da217078c126 c25e7b4adae051a1ed987fe1bf3ca0f6 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor"} -C3N-03928.WXS.T.hg38 C3N-03928 HNSCC WXS tumor CPT0223450006 fc99dc77-db87-43ef-b266-6becf5869734_wxs_gdc_realn.bam 35330025423 BAM harmonized CPTAC3 3f12c588-a639-464d-bb1c-96ec49a307a0 ab78e8a2e985216188dc0d68390a345c {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor"} -C3N-03929.MethArray.Green.A C3N-03929 LUAD Methylation_Array tissue_normal CPT0219930006 203561620054_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 90652092-ee88-436f-8ff1-f2f327938598 c6bb5dd93cf9ce21298f5243562a93b9 {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.MethArray.Green.T C3N-03929 LUAD Methylation_Array tumor CPT0219780006 203273630258_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f14aa4a0-5168-46e3-bfb5-c06ca9ba9270 293db2f4f220d82e200c1aa836a57abb {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor"} -C3N-03929.MethArray.Red.A C3N-03929 LUAD Methylation_Array tissue_normal CPT0219930006 203561620054_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 3eab7c98-38ed-4b50-8a4c-ea7292426fe0 43fae5b250eba76c535089f966534314 {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.MethArray.Red.T C3N-03929 LUAD Methylation_Array tumor CPT0219780006 203273630258_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 4466050f-1a19-4826-ad1d-1ca44806bb6d 1e6b09555d108364892ab38cdc806427 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor"} -C3N-03929.miRNA-Seq.A.hg38 C3N-03929 LUAD miRNA-Seq tissue_normal CPT0219930009 d7b9db56-9d50-4f58-bc1d-af1631e7e3c5_mirnaseq_gdc_realn.bam 199214581 BAM harmonized CPTAC3 dc47d7fa-e22a-452d-b738-93583699ea2f 24035945e92996fe0d59a43558d14ce8 {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.miRNA-Seq.S10_L007_R1.T C3N-03929 LUAD miRNA-Seq tumor CPT0219780009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTTCC_S10_L007_R1_001.unaln.bam 208737992 BAM S10_L007_R1 unaligned CPTAC3 438ae58a-ea72-473c-916e-60882368e16b 664547cb230415431b9c32c1e57fb5c1 {"aliquot_tag": "ALQ_3baaf1db", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03929.miRNA-Seq.S29_L006_R1.A C3N-03929 LUAD miRNA-Seq tissue_normal CPT0219930009 190722_UNC31-K00269_0234_AH7VGTBBXY_CATTTT_S29_L006_R1_001.unaln.bam 180874218 BAM S29_L006_R1 unaligned CPTAC3 9d729d4c-9993-4342-a21e-2167b412434e 2f50f057f59ecae4ce53088cb6e32353 {"aliquot_tag": "ALQ_7670a1ba", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.miRNA-Seq.T.hg38 C3N-03929 LUAD miRNA-Seq tumor CPT0219780009 6382bc10-de64-4d2b-aa81-7c16183a8d3f_mirnaseq_gdc_realn.bam 229689056 BAM harmonized CPTAC3 3ae761bb-1948-4697-8d4a-56f6ea6668ec 7c65097f591964dee5005924e49a33b3 {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor"} -C3N-03929.RNA-Seq.chimeric.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.chimeric.gdc_realn.bam 32802395 BAM chimeric harmonized CPTAC3 bba6577c-15aa-4e26-9f27-2f2bbeb637c7 c1d075b43d5b9f1d7615c56271209b2e {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.RNA-Seq.chimeric.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.chimeric.gdc_realn.bam 33051238 BAM chimeric harmonized CPTAC3 d9de789c-8986-4d4e-af00-b047c37b321d 54d634de485f8508d699923b1ccb97fe {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor"} -C3N-03929.RNA-Seq.genomic.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.genomic.gdc_realn.bam 9909479026 BAM genomic harmonized CPTAC3 f87f47da-9b0f-4d11-a0dc-cad9bce7f6c1 adbcd7e82636befe76050f19a94c63d3 {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.RNA-Seq.genomic.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.genomic.gdc_realn.bam 11832520823 BAM genomic harmonized CPTAC3 8bf2d0ce-0958-4e71-a9d2-67b7aa102ebb 449be1115390b47dc3443f470fe18c66 {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor"} -C3N-03929.RNA-Seq.S4_L001_R1.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3944633762 FASTQ S4_L001_R1 unaligned CPTAC3 797bc491-d17f-42f7-b207-69f734412c7a ae52ca5a6f48818298e761336cd5ff32 {"aliquot_tag": "ALQ_7670a1ba", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.RNA-Seq.S4_L001_R1.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R1_001.fastq.gz 4400507914 FASTQ S4_L001_R1 unaligned CPTAC3 b378549b-9541-4f47-915b-1ea031f34aff 19047ab113c169916705098ffbef3891 {"aliquot_tag": "ALQ_3baaf1db", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03929.RNA-Seq.S4_L001_R2.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 4469374292 FASTQ S4_L001_R2 unaligned CPTAC3 dba50817-cfc3-4aa9-8fb4-0fa6c0cba16f 2f76ccb006f0cbe8dc8347c889e41041 {"aliquot_tag": "ALQ_7670a1ba", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.RNA-Seq.S4_L001_R2.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R2_001.fastq.gz 5003271371 FASTQ S4_L001_R2 unaligned CPTAC3 b2b0d389-b8e7-4131-b5c7-2c812b0a75c1 087b95654bf2f8f53a65c0d7120885f5 {"aliquot_tag": "ALQ_3baaf1db", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03929.RNA-Seq.transcriptome.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.transcriptome.gdc_realn.bam 8205895863 BAM transcriptome harmonized CPTAC3 cf3d406c-d166-4d53-8cd5-455bc2358eec cb76a6578bb01eb6c2a11e6e1a84439c {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.RNA-Seq.transcriptome.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.transcriptome.gdc_realn.bam 10548857985 BAM transcriptome harmonized CPTAC3 0239e5b8-a659-40d9-aaf9-e0a0ccee09b3 20521a8880326873f88a38a4c3f966c9 {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor"} -C3N-03929.WGS.N C3N-03929 LUAD WGS blood_normal CPT0220060002 CPT0220060002.WholeGenome.RP-1303.bam 66045742511 BAM aligned CPTAC3 dea67ad2-b27c-42a6-8219-70782be114ff d447b783ebc363564987e164d8bfafa3 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03929.WGS.N.hg38 C3N-03929 LUAD WGS blood_normal CPT0220060002 6844c215-74c9-4279-92a7-7bd760aedaf2_wgs_gdc_realn.bam 96353498289 BAM harmonized CPTAC3 ddfdbe51-fc93-411d-be38-da554a7cef3d dcd7c1fed2f1f3460d3566ed03288747 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03929.WGS.T C3N-03929 LUAD WGS tumor CPT0219780006 CPT0219780006.WholeGenome.RP-1303.bam 72014353249 BAM aligned CPTAC3 04b6c73c-4bc1-4f06-8921-88d0564dda86 235b0364c3d9f544acb4ec026d9c9915 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor"} -C3N-03929.WGS.T.hg38 C3N-03929 LUAD WGS tumor CPT0219780006 ade1d469-d5fa-4a53-8646-e4f88e52bd4c_wgs_gdc_realn.bam 105345369883 BAM harmonized CPTAC3 f8417132-d56e-41aa-9abc-b6e1a0a674b8 2dc0913be4e8caf490d0b4bb25bb2d21 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor"} -C3N-03929.WXS.A C3N-03929 LUAD WXS tissue_normal CPT0219930006 CPT0219930006.WholeExome.RP-1303.bam 25910667292 BAM aligned CPTAC3 a0d2e6ba-2d6f-4de5-95e8-d3b117c9ce5e 306d7122b59ede04dfec5592732f69be {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.WXS.A.hg38 C3N-03929 LUAD WXS tissue_normal CPT0219930006 29335597-d074-4934-91d9-8e5dca38d848_wxs_gdc_realn.bam 35632720615 BAM harmonized CPTAC3 3b5790a9-8384-48c6-9aa4-c741c9c3b53b 85100ced26f63fa527fefe0a4078d0f2 {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03929.WXS.N C3N-03929 LUAD WXS blood_normal CPT0220060002 CPT0220060002.WholeExome.RP-1303.bam 24534787038 BAM aligned CPTAC3 00277cbe-84c1-47bf-9703-5c546d2b1364 fc5e1bf46ff7a6d28a5da3cce6897cc0 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03929.WXS.N.hg38 C3N-03929 LUAD WXS blood_normal CPT0220060002 6844c215-74c9-4279-92a7-7bd760aedaf2_wxs_gdc_realn.bam 33169072160 BAM harmonized CPTAC3 e07a1156-b814-47cd-8e18-e8624e1dab2f 3b9d6a8c42a3269f2d6e8ec78b2af868 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal"} -C3N-03929.WXS.T C3N-03929 LUAD WXS tumor CPT0219780006 CPT0219780006.WholeExome.RP-1303.bam 22897638486 BAM aligned CPTAC3 b8055775-7b1e-45ca-a966-49fbb0f98a53 77ed8790cd97461046bb4d5b90c7c52c {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor"} -C3N-03929.WXS.T.hg38 C3N-03929 LUAD WXS tumor CPT0219780006 ade1d469-d5fa-4a53-8646-e4f88e52bd4c_wxs_gdc_realn.bam 31041485731 BAM harmonized CPTAC3 40b08bad-820e-4dbf-b901-0a97454136aa 4f32eabb8b8f013009896e6c09b1d706 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor"} -C3N-03933.MethArray.Green.A C3N-03933 HNSCC Methylation_Array tissue_normal CPT0220620006 203273200110_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 85e2ecec-84b0-434d-9b52-f2f0c735f3cb dec502e1f2126f891f450d9f57373873 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.MethArray.Green.T C3N-03933 HNSCC Methylation_Array tumor CPT0220610006 203273200110_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8033a6b0-2f35-45a6-843e-1d2995b24f9e 66c72e941ebb72f100894ea010fe7899 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor"} -C3N-03933.MethArray.Red.A C3N-03933 HNSCC Methylation_Array tissue_normal CPT0220620006 203273200110_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 41e70474-117d-410c-88bd-bf151c464436 a7ae1336a03044c65fee162a629d70e1 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.MethArray.Red.T C3N-03933 HNSCC Methylation_Array tumor CPT0220610006 203273200110_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 83ee5a56-7636-4027-99b0-d3c39ed410bb d3416be6573b1e5ab85f7631d36cb229 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor"} -C3N-03933.miRNA-Seq.A.hg38 C3N-03933 HNSCC miRNA-Seq tissue_normal CPT0220620009 86ae8a85-2a56-458f-acb7-fc9fb107ddf1_mirnaseq_gdc_realn.bam 273667428 BAM harmonized CPTAC3 1226ff44-1c91-41d6-bdb3-80a6238d01fa acdd57e67db061793edd30cb5fda5ca9 {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.miRNA-Seq.S10_L005_R1.A C3N-03933 HNSCC miRNA-Seq tissue_normal CPT0220620009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L005_R1_001.unaln.bam 240143294 BAM S10_L005_R1 unaligned CPTAC3 1387b2f1-e755-4b65-9dee-1e8567cd02c8 606f7811eada8e52a6a44fcdaa49f84e {"aliquot_tag": "ALQ_a15178ef", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.miRNA-Seq.S25_L004_R1.T C3N-03933 HNSCC miRNA-Seq tumor CPT0220610009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L004_R1_001.unaln.bam 228960724 BAM S25_L004_R1 unaligned CPTAC3 f064496a-d227-4b59-89af-da7df7e12537 658af79f94c7ddc0fd08a884acca6ca1 {"aliquot_tag": "ALQ_e6f1023f", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03933.miRNA-Seq.T.hg38 C3N-03933 HNSCC miRNA-Seq tumor CPT0220610009 fd105c6e-39db-4a51-a70b-d65f5a985fa0_mirnaseq_gdc_realn.bam 256413294 BAM harmonized CPTAC3 e1111762-d20c-4ffe-b021-daad6f5cadcc 0b1a316b5565533e1c0913ff7593aed2 {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.chimeric.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.chimeric.gdc_realn.bam 27432231 BAM chimeric harmonized CPTAC3 c35c6df9-5e3b-43a2-9e92-b870be815b00 05c6dd143bf387f68a8c0fe88f5aa7ef {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.RNA-Seq.chimeric.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.chimeric.gdc_realn.bam 508022546 BAM chimeric harmonized CPTAC3 d9301909-9d6f-42f2-915e-a3d42bcf047d b9b48cd191762f60a27af294525fe32c {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.chimeric.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.chimeric.gdc_realn.bam 143341777 BAM chimeric harmonized CPTAC3 3cab17e2-0f9e-4086-bd7d-993fadd51672 87e6446b9b0a38d442aa58bcfca972eb {"aliquot_tag": "ALQ_4b11d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.genomic.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.genomic.gdc_realn.bam 8396260787 BAM genomic harmonized CPTAC3 ace8976d-ce14-4bf9-b982-628e88bf2856 e554fe747c3d3b987cf748494f3c94c8 {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.RNA-Seq.genomic.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.genomic.gdc_realn.bam 8429589321 BAM genomic harmonized CPTAC3 d088efbc-7368-4204-bbed-ec8f2c2ec523 1afb36d654a570e28332155bd85fbe5d {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.genomic.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.genomic.gdc_realn.bam 8474617684 BAM genomic harmonized CPTAC3 8b521896-7bef-43c0-98bd-cbf32ebfc874 8eb66bc6c2a89bdc256ef7ea1f416f93 {"aliquot_tag": "ALQ_4b11d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.S15_L004_R1.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4100140757 FASTQ S15_L004_R1 unaligned CPTAC3 1551efe9-d971-49e8-b106-97529a3bc83f f838fbf6959f2ee0620a81f1a0d9ccaa {"aliquot_tag": "ALQ_e6f1023f", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.S15_L004_R2.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R2_001.fastq.gz 3937845323 FASTQ S15_L004_R2 unaligned CPTAC3 dd399b5f-07c0-49b2-bd2a-40ecb455382c 2400e6538a850a460d4f96f1228c81c2 {"aliquot_tag": "ALQ_e6f1023f", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.S22_L005_R1.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R1_001.fastq.gz 3964533067 FASTQ S22_L005_R1 unaligned CPTAC3 d3d388e2-79e4-4f88-8337-43c48bc5afc3 9edb742df5706d39335de1a1e22f132f {"aliquot_tag": "ALQ_a15178ef", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.RNA-Seq.S22_L005_R2.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R2_001.fastq.gz 4314337980 FASTQ S22_L005_R2 unaligned CPTAC3 4ce107ec-5214-4e15-9f89-d8384bfe344b 7be65d71c3e2d807cb62f7f1b78fdff1 {"aliquot_tag": "ALQ_a15178ef", "sample": "S22", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.RNA-Seq.S2_R1.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R1_001.fastq.gz 5127154253 FASTQ S2_R1 unaligned CPTAC3 d52e8a47-7228-4773-8aad-1161900b961e 0eb33c34d64b66455894edbe4b9eb1b1 {"aliquot_tag": "ALQ_4b11d8c", "sample": "S2", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.S2_R2.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R2_001.fastq.gz 5209190246 FASTQ S2_R2 unaligned CPTAC3 470782ea-f98a-458f-a619-42beeee414af 3601941acae108a1c7a4d6212a753952 {"aliquot_tag": "ALQ_4b11d8c", "sample": "S2", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.transcriptome.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.transcriptome.gdc_realn.bam 12566829813 BAM transcriptome harmonized CPTAC3 7cfff12f-b806-49ff-8842-95bf2d42b60c 690798b74531690c09d3e22594b8903c {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.RNA-Seq.transcriptome.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.transcriptome.gdc_realn.bam 10418933188 BAM transcriptome harmonized CPTAC3 666a82b1-de99-4370-ae48-6616f98fe6c4 27566525828e0300381b4021999eba52 {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor"} -C3N-03933.RNA-Seq.transcriptome.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.transcriptome.gdc_realn.bam 7025915841 BAM transcriptome harmonized CPTAC3 6914ccfb-ce19-4991-b5e6-4e4462d9e4f9 e76745c85eb374806e4a2767fad6b0b4 {"aliquot_tag": "ALQ_4b11d8c", "gdc_sample_type": "Primary Tumor"} -C3N-03933.WGS.N C3N-03933 HNSCC WGS blood_normal CPT0220710002 CPT0220710002.WholeGenome.RP-1303.bam 71725820849 BAM aligned CPTAC3 870433f0-51df-42d2-bce9-ec6ad1c49bc3 0902bfa86275190ee1b5c63e2a5dc5a3 {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal"} -C3N-03933.WGS.N.hg38 C3N-03933 HNSCC WGS blood_normal CPT0220710002 66668ae5-3dca-4c21-b69d-946610b983cb_wgs_gdc_realn.bam 103653416516 BAM harmonized CPTAC3 fea437c3-bce1-48d3-b215-c8dcc4cfd6c0 5b56e32c22328fef9166d846ba980bd7 {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal"} -C3N-03933.WGS.T C3N-03933 HNSCC WGS tumor CPT0220610006 CPT0220610006.WholeGenome.RP-1303.bam 69133706222 BAM aligned CPTAC3 656bb6dc-555f-4202-80f1-e9f2d69d7d24 5331576993644f3378e9b112d4c497b6 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor"} -C3N-03933.WGS.T.hg38 C3N-03933 HNSCC WGS tumor CPT0220610006 3d5ad036-e95e-43e3-bd05-51f91ae4361e_wgs_gdc_realn.bam 102348831958 BAM harmonized CPTAC3 f7e6bd9b-a2aa-4d5b-871b-7b9f475d3abc 54e4cfc3d1fab7b72bd9823b3b079756 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor"} -C3N-03933.WXS.A C3N-03933 HNSCC WXS tissue_normal CPT0220620006 CPT0220620006.WholeExome.RP-1303.bam 24654909027 BAM aligned CPTAC3 f60ba622-e009-4768-a025-ac23c1bba09d 1f7e2de441bac3159e199e4554e18b32 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.WXS.A.hg38 C3N-03933 HNSCC WXS tissue_normal CPT0220620006 66c67198-6890-4dcd-8380-7ff1116dbfd2_wxs_gdc_realn.bam 34715113701 BAM harmonized CPTAC3 c594a56b-5433-4650-8471-eba4cbbd2513 e172797ed310fd1db5093afdeb4d0de4 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-03933.WXS.N C3N-03933 HNSCC WXS blood_normal CPT0220710002 CPT0220710002.WholeExome.RP-1303.bam 39141618732 BAM aligned CPTAC3 26fca7e1-0a16-428a-91da-f4ed217256aa 4fd78fe3192450e8ff0e4c850f0b4e7d {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal"} -C3N-03933.WXS.N.hg38 C3N-03933 HNSCC WXS blood_normal CPT0220710002 66668ae5-3dca-4c21-b69d-946610b983cb_wxs_gdc_realn.bam 53832696277 BAM harmonized CPTAC3 3e3307a5-dc02-49fa-93bc-840e169947ca 5770662f53d91f3123869b9c741bd58a {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal"} -C3N-03933.WXS.T C3N-03933 HNSCC WXS tumor CPT0220610006 CPT0220610006.WholeExome.RP-1303.bam 26994266511 BAM aligned CPTAC3 09d93280-28cb-4d62-97aa-195a59c5c05d cbe4d850648c70b14855d184c9b4269f {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor"} -C3N-03933.WXS.T.hg38 C3N-03933 HNSCC WXS tumor CPT0220610006 3d5ad036-e95e-43e3-bd05-51f91ae4361e_wxs_gdc_realn.bam 37594542653 BAM harmonized CPTAC3 d0257de6-6fed-465b-ab36-56e10915c576 2a3fbc37b53e0815b03d42f4861aedf8 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor"} -C3N-03935.MethArray.Green.T C3N-03935 GBM Methylation_Array tumor CPT0285340006 204367490029_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 207abe29-f504-4315-88df-c6b6a14c9427 57ac380e8e817fcbb102505d5b0677c6 {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor"} -C3N-03935.MethArray.Red.T C3N-03935 GBM Methylation_Array tumor CPT0285340006 204367490029_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 64108981-a48e-464f-9e82-4ee2c2ca448d 63527f45cc13a92708b3e7cce3c0e89d {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor"} -C3N-03935.miRNA-Seq.S13_L001_R1.T C3N-03935 GBM miRNA-Seq tumor CPT0285340009 200403_UNC31-K00269_0274_AHCF7GBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 286598162 BAM S13_L001_R1 unaligned CPTAC3 c0113773-3e21-4991-82ca-7f9be7a7fbde 37b763363fc4ac2b5bf9f3023414a0e2 {"aliquot_tag": "ALQ_bd242f93", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03935.miRNA-Seq.T.hg38 C3N-03935 GBM miRNA-Seq tumor CPT0285340009 d866761c-b106-45a7-a5ca-af2b3bf16c14_mirnaseq_gdc_realn.bam 329521659 BAM harmonized CPTAC3 d5b0b9d3-3fc2-46c7-8d17-ed8cd9b6a9b1 c4f33e1711a5e8e744efc7c43ab19ef7 {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor"} -C3N-03935.RNA-Seq.chimeric.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.chimeric.gdc_realn.bam 21960147 BAM chimeric harmonized CPTAC3 3ecf537d-f410-4880-b0ea-2e4d3c5ff666 c82116427a4fec6b2eb4b0f7f06b3a6d {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor"} -C3N-03935.RNA-Seq.genomic.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.genomic.gdc_realn.bam 6999609466 BAM genomic harmonized CPTAC3 93b9b907-2322-4836-bab9-49ae62bac304 e90ca19648bac5b67881008a133e4945 {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor"} -C3N-03935.RNA-Seq.S29_L008_R1.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3111435295 FASTQ S29_L008_R1 unaligned CPTAC3 4c91740e-2276-47a4-9b32-c7720ab51594 6207b00bd1f4df987ac214c6de4366c0 {"aliquot_tag": "ALQ_bd242f93", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03935.RNA-Seq.S29_L008_R2.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ S29_L008_R2 unaligned CPTAC3 87079c71-53a8-4bf0-925d-e914da7bfd96 e253a53c0ef2eedb1d4ffe272a685192 {"aliquot_tag": "ALQ_bd242f93", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03935.RNA-Seq.transcriptome.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.transcriptome.gdc_realn.bam 6875036624 BAM transcriptome harmonized CPTAC3 57c4f4ff-ad6a-4a1e-8d54-90fa2d10c866 83a8931d75698ed83ab48df8c1ab741a {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor"} -C3N-03935.WGS.N C3N-03935 GBM WGS blood_normal CPT0285370002 CPT0285370002.WholeGenome.RP-2158.bam 22774513143 BAM aligned CPTAC3 d680c188-bf02-4929-8ce0-aaceb1c9d6d6 9583443718a3e2cd7c682f9827ce7e3d {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03935.WGS.N.hg38 C3N-03935 GBM WGS blood_normal CPT0285370002 6d9e79c5-a520-4b3b-bae8-a483281851f4_wgs_gdc_realn.bam 65995432537 BAM harmonized CPTAC3 8d17e3f0-ff4c-4b01-a090-2dc7d653f96e 113dde5c3d411817995ede6350b87eb3 {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03935.WGS.T C3N-03935 GBM WGS tumor CPT0285340006 CPT0285340006.WholeGenome.RP-2158.bam 24454872786 BAM aligned CPTAC3 a7426cb5-a1d7-4401-a1bc-ddd7d9ec45ee faf0457669fb6285f208f1dd86aa0e8b {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor"} -C3N-03935.WGS.T.hg38 C3N-03935 GBM WGS tumor CPT0285340006 9e503f81-06bd-4083-8f68-04dab904125f_wgs_gdc_realn.bam 73242802527 BAM harmonized CPTAC3 abd5362c-b11a-4cfb-9751-6b1041f319cb 348d55fa29df9740b756b185a7ca430e {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor"} -C3N-03935.WXS.N C3N-03935 GBM WXS blood_normal CPT0285370002 CPT0285370002.WholeExome.RP-1303.bam 31920567263 BAM aligned CPTAC3 ecfbada8-1f23-48e7-8650-817e8b8f1b1d 1ed2f0ac6e015639be1c5007b81a0526 {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03935.WXS.N.hg38 C3N-03935 GBM WXS blood_normal CPT0285370002 6d9e79c5-a520-4b3b-bae8-a483281851f4_wxs_gdc_realn.bam 44665231448 BAM harmonized CPTAC3 aff2f741-3432-47fc-a21a-121927b7e96c 78491279646ffc199a3c56bcf1030172 {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal"} -C3N-03935.WXS.T C3N-03935 GBM WXS tumor CPT0285340006 CPT0285340006.WholeExome.RP-1303.bam 30700999800 BAM aligned CPTAC3 4f9548fc-e1c4-43e6-aab1-06bf34f7339e 70f55736feafa86ff4385a86a378f58f {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor"} -C3N-03935.WXS.T.hg38 C3N-03935 GBM WXS tumor CPT0285340006 9e503f81-06bd-4083-8f68-04dab904125f_wxs_gdc_realn.bam 43446340788 BAM harmonized CPTAC3 f4e94091-101c-40bb-bce6-404972b3fa7e f80f5dd2792f4625b71aed3679aa00f0 {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor"} -C3N-03939.MethArray.Green.T C3N-03939 GBM Methylation_Array tumor CPT0285390006 204372030076_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 59bc3dac-ed49-4e5a-8d82-0d68c8d88f4c d646c0a6ba49991d462ee8e61d40ba2e {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03939.MethArray.Red.T C3N-03939 GBM Methylation_Array tumor CPT0285390006 204372030076_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 a9362c30-c06e-4bae-acb9-a6ee2cf24f8e 156bc292815fe7a48d4a2b53beadad1c {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03939.miRNA-Seq.S14_L001_R1.T C3N-03939 GBM miRNA-Seq tumor CPT0285390009 200403_UNC31-K00269_0274_AHCF7GBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 245524484 BAM S14_L001_R1 unaligned CPTAC3 f61d0b3c-0939-49f5-9038-3a4e0363e06f bf2686dba8542b7a8ee8aed745253095 {"aliquot_tag": "ALQ_45b4eb22", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03939.miRNA-Seq.T.hg38 C3N-03939 GBM miRNA-Seq tumor CPT0285390009 c7dd3a3c-1814-4218-9edb-45c98aa846a8_mirnaseq_gdc_realn.bam 270906743 BAM harmonized CPTAC3 484956df-24ec-46be-96c9-79a50bc2041d 2d66bebf22009c8cd58daecaac2b86f7 {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor"} -C3N-03939.RNA-Seq.chimeric.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.chimeric.gdc_realn.bam 19392687 BAM chimeric harmonized CPTAC3 33d4ecf9-f53f-4c6a-a671-3fdb1243ae46 42a033450ee7c03f9abb9610ec06ea09 {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor"} -C3N-03939.RNA-Seq.genomic.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.genomic.gdc_realn.bam 6357210576 BAM genomic harmonized CPTAC3 4217f956-1d52-4f25-a2ca-5e14858f9c7c 77e4891808c737cb7eb11445e42ad65f {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor"} -C3N-03939.RNA-Seq.S30_L008_R1.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ S30_L008_R1 unaligned CPTAC3 3f4dd232-5cba-4b97-bd63-f47967a5436a c9acc87c1e32d5a307249b6fe38e447f {"aliquot_tag": "ALQ_45b4eb22", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-03939.RNA-Seq.S30_L008_R2.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ S30_L008_R2 unaligned CPTAC3 452a0caf-f993-41ba-9f18-1a1180aeb710 8c18199b770ebbb65a9b55a6aace1b68 {"aliquot_tag": "ALQ_45b4eb22", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-03939.RNA-Seq.transcriptome.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.transcriptome.gdc_realn.bam 8358938403 BAM transcriptome harmonized CPTAC3 b67aa98e-7156-4f73-a8be-905f562cb6a2 a5ee8f21077cdc0f3b585fab7f7f64a2 {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor"} -C3N-03939.WGS.N C3N-03939 GBM WGS blood_normal CPT0285410002 CPT0285410002.WholeGenome.RP-2158.bam 27430682246 BAM aligned CPTAC3 719de53d-9cb1-4d43-8b73-bc277df19224 7f4513d241c5df965c9be0434562c316 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03939.WGS.N.hg38 C3N-03939 GBM WGS blood_normal CPT0285410002 6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wgs_gdc_realn.bam 81852016126 BAM harmonized CPTAC3 c84d71d0-5ca9-4237-bab1-93228f81c37e 7acb24f258bd2d11eddb67290f1dcfc3 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03939.WGS.T C3N-03939 GBM WGS tumor CPT0285390006 CPT0285390006.WholeGenome.RP-2158.bam 25775708475 BAM aligned CPTAC3 ba5428f4-d7c6-479a-9214-d7e1a4947ecf ea8ec285146eb2733f18adfa12fa2403 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03939.WGS.T.hg38 C3N-03939 GBM WGS tumor CPT0285390006 fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wgs_gdc_realn.bam 77742013082 BAM harmonized CPTAC3 4ffecf2d-31f6-48ff-9829-3ad720b0f748 a9c730fc1e04ea04b0dc6cf77e512aa7 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03939.WXS.N C3N-03939 GBM WXS blood_normal CPT0285410002 CPT0285410002.WholeExome.RP-1303.bam 25218551391 BAM aligned CPTAC3 221aa9d7-8d0d-422b-b89e-868316bf923e a84e0b42d99823635b64d848f074cb27 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03939.WXS.N.hg38 C3N-03939 GBM WXS blood_normal CPT0285410002 6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wxs_gdc_realn.bam 34765297539 BAM harmonized CPTAC3 96c5d2ef-106f-4362-a6c4-49724e0abe80 6353a3cb14c080c3799293994a43d4e6 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-03939.WXS.T C3N-03939 GBM WXS tumor CPT0285390006 CPT0285390006.WholeExome.RP-1303.bam 16808844495 BAM aligned CPTAC3 b8dc848c-62f4-4de0-a629-1ba4efd06757 419f888cf958995fa91966ac5ce86ae1 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor"} -C3N-03939.WXS.T.hg38 C3N-03939 GBM WXS tumor CPT0285390006 fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wxs_gdc_realn.bam 23051245145 BAM harmonized CPTAC3 7292b808-4c7a-4240-a3d3-096db96095b1 68a2de12523bcff6be316e4092080329 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor"} -C3N-04092.MethArray.Green.T C3N-04092 GBM Methylation_Array tumor CPT0285440006 204372030072_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d9d5b8be-d2cb-4696-a372-9facb515b58f b8441ad7b43e8b636aa6c44ee71434ab {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor"} -C3N-04092.MethArray.Red.T C3N-04092 GBM Methylation_Array tumor CPT0285440006 204372030072_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 cab1d1c1-60c4-40f0-8558-8773ca36b8f1 d77e44bcc32b7a698642b2e32a0d53a1 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor"} -C3N-04092.miRNA-Seq.S15_L001_R1.T C3N-04092 GBM miRNA-Seq tumor CPT0285440009 200403_UNC31-K00269_0274_AHCF7GBBXY_CTATAC_S15_L001_R1_001.unaln.bam 247318813 BAM S15_L001_R1 unaligned CPTAC3 91b1bd12-b236-4f6c-911d-7db6a9a672af 5e8d424c1233a731e08bad1e213cf549 {"aliquot_tag": "ALQ_a0211f2b", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04092.miRNA-Seq.T.hg38 C3N-04092 GBM miRNA-Seq tumor CPT0285440009 b8e7d110-81d4-488f-a6ac-88818105d58c_mirnaseq_gdc_realn.bam 274868455 BAM harmonized CPTAC3 5fc1f505-741a-4c21-977e-a69c068dddf4 fdee458d6d3a8b3c005b47914f926afd {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor"} -C3N-04092.RNA-Seq.chimeric.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.chimeric.gdc_realn.bam 26117157 BAM chimeric harmonized CPTAC3 ac623e92-a549-42e6-af8a-e217bd6eb31c d2aea394c3695c8819b65b35edfaa339 {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor"} -C3N-04092.RNA-Seq.genomic.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.genomic.gdc_realn.bam 6339005273 BAM genomic harmonized CPTAC3 62103b7c-375e-4d4b-9527-397101cacfd4 d9155e9bae961e9e32f6c87fcacf807d {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor"} -C3N-04092.RNA-Seq.S31_L008_R1.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ S31_L008_R1 unaligned CPTAC3 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 096b63e1e02fadb2964865f85145f210 {"aliquot_tag": "ALQ_a0211f2b", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04092.RNA-Seq.S31_L008_R2.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ S31_L008_R2 unaligned CPTAC3 07a3bbdc-69c2-485b-98b2-82ada22cae69 381c644f9e1d582e1d7238a5cfd0065c {"aliquot_tag": "ALQ_a0211f2b", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04092.RNA-Seq.transcriptome.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.transcriptome.gdc_realn.bam 6845484963 BAM transcriptome harmonized CPTAC3 5479e396-2db3-455b-b611-d797db731225 5eb38a350d72f6cb7c358823bdf55bc3 {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor"} -C3N-04092.WGS.N C3N-04092 GBM WGS blood_normal CPT0285450002 CPT0285450002.WholeGenome.RP-2158.bam 24498698839 BAM aligned CPTAC3 566f7b48-65df-4fb3-87bc-8586884af4f1 4163c5eed29b6e10dcb8b8a00961bafd {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal"} -C3N-04092.WGS.N.hg38 C3N-04092 GBM WGS blood_normal CPT0285450002 79ce8e10-2d6f-4d92-a58c-a34c06af7677_wgs_gdc_realn.bam 74020875117 BAM harmonized CPTAC3 4c77804a-0e1e-449d-affb-55a849b06bc3 3f195251abf1d37de6e5480af6240e0f {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal"} -C3N-04092.WGS.T C3N-04092 GBM WGS tumor CPT0285440006 CPT0285440006.WholeGenome.RP-2158.bam 24504031508 BAM aligned CPTAC3 2bf06983-aea2-41c2-adf3-ff62afc65962 065d7f442c1dd8244cbc7acf702d09e3 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor"} -C3N-04092.WGS.T.hg38 C3N-04092 GBM WGS tumor CPT0285440006 01e34584-fe56-487f-900d-0c82daf338a0_wgs_gdc_realn.bam 74544654961 BAM harmonized CPTAC3 2545b6fa-59be-403f-9d33-29b33c9fea27 a10fecf2efbfe70758caae437d4bc5eb {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor"} -C3N-04092.WXS.N C3N-04092 GBM WXS blood_normal CPT0285450002 CPT0285450002.WholeExome.RP-1303.bam 27331686699 BAM aligned CPTAC3 02dea684-c120-47a8-9e66-f3ff166d1819 b92a324f4ff18cec014d891ad48c6809 {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal"} -C3N-04092.WXS.N.hg38 C3N-04092 GBM WXS blood_normal CPT0285450002 79ce8e10-2d6f-4d92-a58c-a34c06af7677_wxs_gdc_realn.bam 37382509699 BAM harmonized CPTAC3 bf40953c-253a-4b01-afd9-04ad79976e45 94e40c2aaf65b48efba917bcee15b0d7 {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal"} -C3N-04092.WXS.T C3N-04092 GBM WXS tumor CPT0285440006 CPT0285440006.WholeExome.RP-1303.bam 26184111709 BAM aligned CPTAC3 50e9eb47-f03c-4992-88dd-551c23a4e436 caaa9849f32a2c5d89f45111abe64355 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor"} -C3N-04092.WXS.T.hg38 C3N-04092 GBM WXS tumor CPT0285440006 01e34584-fe56-487f-900d-0c82daf338a0_wxs_gdc_realn.bam 37480467959 BAM harmonized CPTAC3 8a591e41-81b8-497b-a030-e20bbbf8e555 0d178a7a5fb89a5fed9ee00b9b295274 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor"} -C3N-04094.MethArray.Green.T C3N-04094 GBM Methylation_Array tumor CPT0285460007 204367470131_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5c3e1ba0-cae1-4ae9-9273-342a86eb4c40 b0db584a4d71d5e8d153a9e2c96bf161 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor"} -C3N-04094.MethArray.Red.T C3N-04094 GBM Methylation_Array tumor CPT0285460007 204367470131_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 87a4544c-b6d3-4560-aaf8-81719f14b3eb 5c9d3a1f850764061ce770c389085aef {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor"} -C3N-04094.miRNA-Seq.S16_L001_R1.T C3N-04094 GBM miRNA-Seq tumor CPT0285460010 200403_UNC31-K00269_0274_AHCF7GBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 149874462 BAM S16_L001_R1 unaligned CPTAC3 a8e314a0-82cb-467d-8341-0d0069bb2b0e 67045085535b61b9aea205dd5f731436 {"aliquot_tag": "ALQ_ba26c5ae", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04094.miRNA-Seq.T.hg38 C3N-04094 GBM miRNA-Seq tumor CPT0285460010 16e7f672-0451-45e7-b0a8-a5a62491ea99_mirnaseq_gdc_realn.bam 165882365 BAM harmonized CPTAC3 ab2a0a68-a90a-454d-86ad-b9bc2aaf99dc dcd88526e635e2263dd3d42d34e6dbed {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor"} -C3N-04094.RNA-Seq.chimeric.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.chimeric.gdc_realn.bam 51375356 BAM chimeric harmonized CPTAC3 419c5b79-8c1b-4122-9d86-118b4c9d2b1d 79d5214644e13930124126b05e0628fa {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor"} -C3N-04094.RNA-Seq.genomic.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.genomic.gdc_realn.bam 11462263435 BAM genomic harmonized CPTAC3 de26d2cc-6297-4625-8bb8-11911c9f1e8f a8149f059c9fdf05f7d98b22e11b541f {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor"} -C3N-04094.RNA-Seq.S60_L006_R1.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ S60_L006_R1 unaligned CPTAC3 fa31d2b3-82b2-4734-8c22-ac89b732e8a2 cdfe6c623bfababea2e868a4ae59f0d7 {"aliquot_tag": "ALQ_ba26c5ae", "sample": "S60", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04094.RNA-Seq.S60_L006_R2.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ S60_L006_R2 unaligned CPTAC3 254472af-7bd3-4dfb-9014-c2dc90560859 de8e1f778e080b5809fefcbc804cdcc0 {"aliquot_tag": "ALQ_ba26c5ae", "sample": "S60", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04094.RNA-Seq.transcriptome.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.transcriptome.gdc_realn.bam 13753296993 BAM transcriptome harmonized CPTAC3 a4edf812-4a4c-4f05-ac9a-22f4040ff901 5c76a547efa773dc39094922b930e1e0 {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor"} -C3N-04094.WGS.N C3N-04094 GBM WGS blood_normal CPT0285490002 CPT0285490002.WholeGenome.RP-2158.bam 32209259574 BAM aligned CPTAC3 96edcb35-53eb-4666-b388-713a74542f88 3dda872bd2942f35fabb36e1c84148b7 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal"} -C3N-04094.WGS.N.hg38 C3N-04094 GBM WGS blood_normal CPT0285490002 1890659f-5698-4b8f-a0bf-1da6b3791731_wgs_gdc_realn.bam 94794094970 BAM harmonized CPTAC3 9f93ec20-1c38-41a0-8f96-28457caad083 4509d1b328ecd668f7f22457f604e4f9 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal"} -C3N-04094.WGS.T C3N-04094 GBM WGS tumor CPT0285460007 CPT0285460007.WholeGenome.RP-2158.bam 22517447803 BAM aligned CPTAC3 8574b1b2-a42e-4fae-9300-61ae76f62d00 0b15efca7c6bac108588e65712c37f99 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor"} -C3N-04094.WGS.T.hg38 C3N-04094 GBM WGS tumor CPT0285460007 917e08bc-e1f6-4a6f-a593-4b99445df33e_wgs_gdc_realn.bam 66930723100 BAM harmonized CPTAC3 57d06724-da21-4c7d-8738-ffd08f512893 20634cd7bc8f42385b6e93a2727366f4 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor"} -C3N-04094.WXS.N C3N-04094 GBM WXS blood_normal CPT0285490002 CPT0285490002.WholeExome.RP-1303.bam 21093147419 BAM aligned CPTAC3 4e99f6a2-d917-4406-9326-2a9fc2b509ab 1dca8575fdbd1a9d3e3ea7d8e3f64174 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal"} -C3N-04094.WXS.N.hg38 C3N-04094 GBM WXS blood_normal CPT0285490002 1890659f-5698-4b8f-a0bf-1da6b3791731_wxs_gdc_realn.bam 28904441295 BAM harmonized CPTAC3 30918018-bf91-418f-9d9f-b7d873524ee0 0e19475ea4e29846230c0d1375b321e5 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal"} -C3N-04094.WXS.T C3N-04094 GBM WXS tumor CPT0285460007 CPT0285460007.WholeExome.RP-1303.bam 22403351746 BAM aligned CPTAC3 1fe503ff-2f3a-45eb-b1ce-2d64bfdd3ba0 4e5f0cb2d43597dcb6c35a1ae88be98c {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor"} -C3N-04094.WXS.T.hg38 C3N-04094 GBM WXS tumor CPT0285460007 917e08bc-e1f6-4a6f-a593-4b99445df33e_wxs_gdc_realn.bam 32627517794 BAM harmonized CPTAC3 0fb8f474-4c02-4a4e-8281-6472347703c7 904001a4ae0521b352cc0e055e675944 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor"} -C3N-04097.MethArray.Green.T C3N-04097 GBM Methylation_Array tumor CPT0285500006 204372030164_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e7c32d3b-ffc3-47e3-917c-9042af3b56b5 8f1af1c1922c0076ce08a8e768826879 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor"} -C3N-04097.MethArray.Red.T C3N-04097 GBM Methylation_Array tumor CPT0285500006 204372030164_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 343a7d43-de13-4bb2-9b70-c6fba43a1c06 a6f9d2a70038e18c02d622f0d11b3feb {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor"} -C3N-04097.miRNA-Seq.S17_L001_R1.T C3N-04097 GBM miRNA-Seq tumor CPT0285500009 200403_UNC31-K00269_0274_AHCF7GBBXY_GACGAC_S17_L001_R1_001.unaln.bam 259764215 BAM S17_L001_R1 unaligned CPTAC3 a9428f90-fc78-4575-b8cb-96de3e36296f bbcf7fc25087244596d20e732ad5f913 {"aliquot_tag": "ALQ_9efd6a4e", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04097.miRNA-Seq.T.hg38 C3N-04097 GBM miRNA-Seq tumor CPT0285500009 7370bed1-5db7-4796-9763-d586cd61377e_mirnaseq_gdc_realn.bam 291557531 BAM harmonized CPTAC3 7055fdfe-5233-425f-9ed6-24158dcc0afd d931adbc27b0322a0f5d6d12d7e9d19a {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor"} -C3N-04097.RNA-Seq.chimeric.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.chimeric.gdc_realn.bam 27565623 BAM chimeric harmonized CPTAC3 6e5914c8-c63a-42c4-911a-33419acf253d 4247b4f14edc4a42493fdb60c97c4b40 {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor"} -C3N-04097.RNA-Seq.genomic.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.genomic.gdc_realn.bam 6664163855 BAM genomic harmonized CPTAC3 d750825b-4fde-4bca-a2ff-c87bb4ca22c1 58c0f857500d6fec9f2d0451f1fbefb3 {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor"} -C3N-04097.RNA-Seq.S1_L004_R1.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ S1_L004_R1 unaligned CPTAC3 9e14644a-eeec-4d36-a439-d7defafab519 0984770fa06a36ea6ea3e9a65080a01a {"aliquot_tag": "ALQ_9efd6a4e", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04097.RNA-Seq.S1_L004_R2.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ S1_L004_R2 unaligned CPTAC3 f1b1a394-d643-496b-b856-60147ea00c1a 82bb59dd2209eb45feae2645291434b5 {"aliquot_tag": "ALQ_9efd6a4e", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04097.RNA-Seq.transcriptome.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.transcriptome.gdc_realn.bam 8025555743 BAM transcriptome harmonized CPTAC3 65aa658f-ef1f-4d59-9326-30702028052d 1a5b012bac73e8c20b2375aa2de10050 {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor"} -C3N-04097.WGS.N C3N-04097 GBM WGS blood_normal CPT0285530002 CPT0285530002.WholeGenome.RP-2158.bam 29954202898 BAM aligned CPTAC3 fc560399-532f-4dd8-b751-b8918dce92a0 677983628c2001d417bd3e165463bfbe {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal"} -C3N-04097.WGS.N.hg38 C3N-04097 GBM WGS blood_normal CPT0285530002 926063e7-fbde-4313-8074-4ca104eef182_wgs_gdc_realn.bam 89113536785 BAM harmonized CPTAC3 4784a3d9-c761-4a61-9dac-3d84eb853c59 5b048f201405f108765411ce5db2bbc2 {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal"} -C3N-04097.WGS.T C3N-04097 GBM WGS tumor CPT0285500006 CPT0285500006.WholeGenome.RP-2158.bam 28363607419 BAM aligned CPTAC3 f9c5426f-dacd-426f-9a0f-897ccad93344 e2ab05ff6917d412f766e6f5e948d6fa {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor"} -C3N-04097.WGS.T.hg38 C3N-04097 GBM WGS tumor CPT0285500006 dc8d772e-ffad-4cc1-9a32-80000b767f7b_wgs_gdc_realn.bam 86071581874 BAM harmonized CPTAC3 b206bbed-72f4-4453-b41b-7af6e8c5555a bc5b0d002a8b17af36ebf8ea7ce57d00 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor"} -C3N-04097.WXS.N C3N-04097 GBM WXS blood_normal CPT0285530002 CPT0285530002.WholeExome.RP-1303.bam 33139294412 BAM aligned CPTAC3 e0264820-b1e9-4169-9ce4-4ec86ef3df3f 32d33936877cfb574b9ea9d381014780 {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal"} -C3N-04097.WXS.N.hg38 C3N-04097 GBM WXS blood_normal CPT0285530002 926063e7-fbde-4313-8074-4ca104eef182_wxs_gdc_realn.bam 45034306382 BAM harmonized CPTAC3 f9e2e52a-6327-4053-8262-66ca49ec97ee 5ef62daff597248bcc65335987766337 {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal"} -C3N-04097.WXS.T C3N-04097 GBM WXS tumor CPT0285500006 CPT0285500006.WholeExome.RP-1303.bam 16249740413 BAM aligned CPTAC3 af47378d-93eb-4d71-9fd9-19a5fbda4cda c6da59d57b0c62201bd616321dc26014 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor"} -C3N-04097.WXS.T.hg38 C3N-04097 GBM WXS tumor CPT0285500006 dc8d772e-ffad-4cc1-9a32-80000b767f7b_wxs_gdc_realn.bam 23088909668 BAM harmonized CPTAC3 c394da8c-1cc9-4554-9d4a-5ac062b4aa42 361b6b8d8d15107a68cb7656e9564522 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor"} -C3N-04098.MethArray.Green.T C3N-04098 GBM Methylation_Array tumor CPT0285540007 204372030085_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 47ea6a5c-160f-48ee-9d61-4561b529abcd 89bfa7133997b45f8ecdd77dbedec7d7 {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor"} -C3N-04098.MethArray.Red.T C3N-04098 GBM Methylation_Array tumor CPT0285540007 204372030085_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 3c91d6ac-4127-44bc-9f33-d58a07e3887d 4b613e2bf977fc871d488f79c5c40871 {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor"} -C3N-04098.miRNA-Seq.S18_L001_R1.T C3N-04098 GBM miRNA-Seq tumor CPT0285540010 200403_UNC31-K00269_0274_AHCF7GBBXY_TAATCG_S18_L001_R1_001.unaln.bam 257392272 BAM S18_L001_R1 unaligned CPTAC3 a42fe332-87d4-4a16-a2ad-de9c84e8cee1 bad4e0983479bac0f19571e392f20a6f {"aliquot_tag": "ALQ_bba456b", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04098.miRNA-Seq.T.hg38 C3N-04098 GBM miRNA-Seq tumor CPT0285540010 f8ef438d-5435-410c-981e-3c637c1a913b_mirnaseq_gdc_realn.bam 288457553 BAM harmonized CPTAC3 76804205-4e1a-44fc-b05b-c7db2d525060 405f3bc4f2797c9dfc1eabef7cee027e {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor"} -C3N-04098.RNA-Seq.chimeric.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.chimeric.gdc_realn.bam 23255846 BAM chimeric harmonized CPTAC3 9e1617d6-f327-4336-b709-639504f8fcd3 b0b0fbcb5fd625c556cacc16aea91d50 {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor"} -C3N-04098.RNA-Seq.genomic.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.genomic.gdc_realn.bam 5855104607 BAM genomic harmonized CPTAC3 816ed8e8-b4a6-4f2b-8433-b5a020ab7b48 de7fdf70fe1264245cd681aacaf0549c {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor"} -C3N-04098.RNA-Seq.S2_L004_R1.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ S2_L004_R1 unaligned CPTAC3 e4772d8e-0ded-4236-8602-1b1dfe51e8df a2c47ebaa52301b2b649605b70283058 {"aliquot_tag": "ALQ_bba456b", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04098.RNA-Seq.S2_L004_R2.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ S2_L004_R2 unaligned CPTAC3 129e4b38-443f-4cf9-8e20-f98ccef517c8 ca8808351719f9cebd4bfb9948814dfc {"aliquot_tag": "ALQ_bba456b", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04098.RNA-Seq.transcriptome.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.transcriptome.gdc_realn.bam 6937643241 BAM transcriptome harmonized CPTAC3 5fa1a184-e36e-4d47-8387-2f6104b37f99 e4efb4c667354848dbab301d83b8e131 {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor"} -C3N-04098.WGS.N C3N-04098 GBM WGS blood_normal CPT0285570002 CPT0285570002.WholeGenome.RP-2158.bam 27310844142 BAM aligned CPTAC3 7750f7a5-f900-492e-bfe8-8eb204bb32c3 b38d23906173f49262d77fe7ea08d538 {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal"} -C3N-04098.WGS.N.hg38 C3N-04098 GBM WGS blood_normal CPT0285570002 6416d98a-0117-48ec-a6ea-0875e22f55aa_wgs_gdc_realn.bam 81502245485 BAM harmonized CPTAC3 4cf31016-4283-4728-a22e-b353f72b2ae7 a969ee7707fea38c2e8d3421a0ee312c {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal"} -C3N-04098.WGS.T C3N-04098 GBM WGS tumor CPT0285540007 CPT0285540007.WholeGenome.RP-2158.bam 24939569712 BAM aligned CPTAC3 d866896c-45d0-4928-8193-ad1e2aca0b4a 7ba1ba31d7a085a5d73b71b63ca6518b {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor"} -C3N-04098.WGS.T.hg38 C3N-04098 GBM WGS tumor CPT0285540007 884a7198-709f-4946-9e7a-dea9055906df_wgs_gdc_realn.bam 75917029860 BAM harmonized CPTAC3 687ccc83-df37-4a60-acb8-5a6a684de758 6086a07bb809d62ce9a6b614d2b517ef {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor"} -C3N-04098.WXS.N C3N-04098 GBM WXS blood_normal CPT0285570002 CPT0285570002.WholeExome.RP-1303.bam 20394067243 BAM aligned CPTAC3 c242871c-7c14-4485-9ebc-e61f77f019bf 4eb014fce5a992c3998d7f7e2be578c0 {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal"} -C3N-04098.WXS.N.hg38 C3N-04098 GBM WXS blood_normal CPT0285570002 6416d98a-0117-48ec-a6ea-0875e22f55aa_wxs_gdc_realn.bam 27415183845 BAM harmonized CPTAC3 33f39ddb-4185-4905-81a6-52c9429067cc ab3a4ec64f905cd1868f4c2dc86dde9f {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal"} -C3N-04098.WXS.T C3N-04098 GBM WXS tumor CPT0285540007 CPT0285540007.WholeExome.RP-1303.bam 22554228508 BAM aligned CPTAC3 dafa82a6-dba7-449d-93a1-19b928e9e5ff 654482e78db397fc32ed34deedce4a2e {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor"} -C3N-04098.WXS.T.hg38 C3N-04098 GBM WXS tumor CPT0285540007 884a7198-709f-4946-9e7a-dea9055906df_wxs_gdc_realn.bam 31334787046 BAM harmonized CPTAC3 2002b1f2-6753-4744-aca7-282e72f76dfb dfb1fbbee0c09c838dc524abf99da937 {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor"} -C3N-04100.MethArray.Green.T C3N-04100 GBM Methylation_Array tumor CPT0285590006 204372030087_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2ba9e0e4-75bb-4337-9f00-84bca1ebafa2 da4054674d9d392292e720368f77d39d {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor"} -C3N-04100.MethArray.Red.T C3N-04100 GBM Methylation_Array tumor CPT0285590006 204372030087_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 0081743c-0dc3-40b7-9c2d-3ed5bb447a98 315bad76f550028acbbdcb2d68143c4d {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor"} -C3N-04100.miRNA-Seq.S46_L008_R1.T C3N-04100 GBM miRNA-Seq tumor CPT0285590013 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCCCGA_S46_L008_R1_001.unaln.bam 177661367 BAM S46_L008_R1 unaligned CPTAC3 601c2e37-5f34-490e-9d23-b35b0666b729 5efaffbc62c746d941ef22dbbb28571e {"aliquot_tag": "ALQ_6a23d060", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04100.miRNA-Seq.T.hg38 C3N-04100 GBM miRNA-Seq tumor CPT0285590013 9cbac332-c8ef-4f04-af5b-d1ef073c17e4_mirnaseq_gdc_realn.bam 196890022 BAM harmonized CPTAC3 4332b035-f3ff-425c-97d5-04c51097867c 23384249754801601ea4a09c62c6f440 {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor"} -C3N-04100.RNA-Seq.chimeric.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.chimeric.gdc_realn.bam 27851232 BAM chimeric harmonized CPTAC3 3882af7b-59f3-49c5-aca5-771266b38ba0 b64ee998348b8e63492f255b45847bfa {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor"} -C3N-04100.RNA-Seq.genomic.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.genomic.gdc_realn.bam 7196840849 BAM genomic harmonized CPTAC3 6eb4e682-2784-4f2d-8250-496a40f3aeb2 79a1dbf1ef7deddf71d7c4b0692d1637 {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor"} -C3N-04100.RNA-Seq.S55_L005_R1.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ S55_L005_R1 unaligned CPTAC3 d5d4dee6-5523-43c9-902b-c019c3a29533 00c4fd479a32cf9cb27e1dd76c87e47c {"aliquot_tag": "ALQ_6a23d060", "sample": "S55", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04100.RNA-Seq.S55_L005_R2.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ S55_L005_R2 unaligned CPTAC3 92f769cc-3b94-4805-bef6-3de96959e898 bb91595c586526f3a8a51ddb8f2c94e8 {"aliquot_tag": "ALQ_6a23d060", "sample": "S55", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04100.RNA-Seq.transcriptome.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.transcriptome.gdc_realn.bam 8494219540 BAM transcriptome harmonized CPTAC3 64fb89ba-1729-4c24-acc0-e0ef0993887f 71b88336166adbc38108f3c1114b435a {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor"} -C3N-04100.WGS.N C3N-04100 GBM WGS blood_normal CPT0285610002 CPT0285610002.WholeGenome.RP-2158.bam 21930007345 BAM aligned CPTAC3 7f74ed3f-e21c-4b44-84ad-49124953f987 3c9ea2075bac8d7319958b79fa0d44a5 {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-04100.WGS.N.hg38 C3N-04100 GBM WGS blood_normal CPT0285610002 e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wgs_gdc_realn.bam 66740897940 BAM harmonized CPTAC3 4d339a11-7fe1-4768-9bce-01c4d959a1b5 3047418fcddb4de262e2224aad8db920 {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-04100.WGS.T C3N-04100 GBM WGS tumor CPT0285590006 CPT0285590006.WholeGenome.RP-2158.bam 26982190290 BAM aligned CPTAC3 51d10bc6-e276-4f15-8be4-8f45643913a0 5cb342ee12bdf68d10b8816071c2c7b6 {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor"} -C3N-04100.WGS.T.hg38 C3N-04100 GBM WGS tumor CPT0285590006 60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wgs_gdc_realn.bam 78877872512 BAM harmonized CPTAC3 6655aea0-8f5c-4a62-813f-4afe372c81a3 c7f5f21aad21a761ecf4466ad90e3154 {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor"} -C3N-04100.WXS.N C3N-04100 GBM WXS blood_normal CPT0285610002 CPT0285610002.WholeExome.RP-1303.bam 28613971741 BAM aligned CPTAC3 738934dd-363d-4ce8-a743-616e0e07bfc7 46bad9dd8550c2a18a344b9341aa293a {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-04100.WXS.N.hg38 C3N-04100 GBM WXS blood_normal CPT0285610002 e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wxs_gdc_realn.bam 38615780883 BAM harmonized CPTAC3 7c20addd-92b7-436e-b8c7-0e202439e2eb 3af2daa9322a9aeec3886dce704188d8 {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal"} -C3N-04100.WXS.T C3N-04100 GBM WXS tumor CPT0285590006 CPT0285590006.WholeExome.RP-1303.bam 20792557880 BAM aligned CPTAC3 0d3f613d-522c-463c-a8bd-b4616bb6745a 94e8b5cc8cbdf56ba3ac13c68b25ca2f {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor"} -C3N-04100.WXS.T.hg38 C3N-04100 GBM WXS tumor CPT0285590006 60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wxs_gdc_realn.bam 30013568056 BAM harmonized CPTAC3 645e357e-7bdf-4136-812c-e02db7f7fab0 c58cee09d0ac0a841dab9612a653bfc9 {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor"} -C3N-04113.MethArray.Green.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204367490093_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 67d72c45-fa2d-4cad-8582-0f19edbe887f d1e011e14c85077bdb8822de07f06e55 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor"} -C3N-04113.MethArray.Green.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204930630109_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a6c818e8-81f4-426d-bffa-0955e283e20c 1c00ec0a93169324b058c0f2797c8d29 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor"} -C3N-04113.MethArray.Red.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204367490093_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 fa6fcda1-b93e-4900-92fb-885e8ade614b 26e8d89e983ad6a3cb27385e0d70def6 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor"} -C3N-04113.MethArray.Red.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204930630109_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 df28f441-dc30-48e2-9879-7505d6adc086 0bd789f711f2878a10c8767c4954235f {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor"} -C3N-04113.miRNA-Seq.S19_L001_R1.T C3N-04113 GBM miRNA-Seq tumor CPT0285620009 200403_UNC31-K00269_0274_AHCF7GBBXY_TACAGC_S19_L001_R1_001.unaln.bam 270137881 BAM S19_L001_R1 unaligned CPTAC3 a7fa3f22-13ef-477e-9c36-96b8bb785f93 6baf863fd9d32accf03d39deafaa653b {"aliquot_tag": "ALQ_62a94b80", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04113.miRNA-Seq.T.hg38 C3N-04113 GBM miRNA-Seq tumor CPT0285620009 cea639d4-1aa7-4d7c-b599-0fea38b57497_mirnaseq_gdc_realn.bam 297734367 BAM harmonized CPTAC3 0e0a8eff-4408-44a7-a764-fad48d8c32f8 df910efdda6fb5bbc29664dbeaa8ed7d {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_7d56a3b1.MethArray.Green.T C3N-04113 GBM Methylation_Array tumor CPT0285640006 205555390176_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 75e8ad59-7e4e-4212-9e10-cc1650e4d469 a6ad99dea8e0330c9d418ed888135da5 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_7d56a3b1.MethArray.Red.T C3N-04113 GBM Methylation_Array tumor CPT0285640006 205555390176_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 01e08033-624d-46a3-a4de-b19d5a804ee5 05507d1faaaa0b674c092bbe4f943940 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_7d56a3b1.WGS.T C3N-04113 GBM WGS tumor CPT0285640006 CPT0285640006.WholeGenome.RP-2158.bam 28355549625 BAM aligned CPTAC3 ab315250-4cd5-431b-84e7-483d1db2b003 3c8d11f094f03f4df52ac934bcab5db3 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_7d56a3b1.WGS.T.hg38 C3N-04113 GBM WGS tumor CPT0285640006 1ac39c4d-4742-4eea-ac1a-074503b7b5a4_wgs_gdc_realn.bam 84901748163 BAM harmonized CPTAC3 316589c0-c980-491c-85cb-ed6085aa0239 c57f6aba5619f0fb1460eef684b1656f {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_7d56a3b1.WXS.T C3N-04113 GBM WXS tumor CPT0285640006 CPT0285640006.WholeExome.RP-1303.bam 23107973738 BAM aligned CPTAC3 96d34906-3b49-43f7-b624-7575ad5611ec c2f0d49eea3427fd0f075fab674f96f2 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_7d56a3b1.WXS.T.hg38 C3N-04113 GBM WXS tumor CPT0285640006 1ac39c4d-4742-4eea-ac1a-074503b7b5a4_wxs_gdc_realn.bam 32633163767 BAM harmonized CPTAC3 e4493502-3425-4529-96af-414aae684e99 c851ea0c3cf38982b87ddc572fa1f855 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.miRNA-Seq.S10_L005_R1.T C3N-04113 GBM miRNA-Seq tumor CPT0285640009 210702_UNC32-K00270_0289_AHKJ22BBXY_CTTGTA_S10_L005_R1_001.unaln.bam 144320274 BAM S10_L005_R1 unaligned CPTAC3 10503913-3b14-490a-a103-7941a0d25454 dfa01d539dc19fdc75abadb6b3a98984 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.miRNA-Seq.S28_L003_R1.T C3N-04113 GBM miRNA-Seq tumor CPT0285640009 210817_UNC31-K00269_0302_AHLCTHBBXY_CTTGTA_S28_L003_R1_001.unaln.bam 94443326 BAM S28_L003_R1 unaligned CPTAC3 8c9c36e0-88de-4c2a-b050-381af131c584 231b766d5cee0439829924fcb672c53c {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.miRNA-Seq.T.hg38 C3N-04113 GBM miRNA-Seq tumor CPT0285640009 23c43fdb-733e-4927-9051-476c5eebfef6_mirnaseq_gdc_realn.bam 263608949 BAM harmonized CPTAC3 42ecff0b-6285-4019-8aab-be9148e5e484 363721ad955b57d7029f4d847e96c716 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.RNA-Seq.chimeric.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.chimeric.gdc_realn.bam 281328247 BAM chimeric harmonized CPTAC3 8d629461-d2d2-4c24-aed0-c1fa410e1244 acf8fc97b051def75c9186feb226ac86 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.RNA-Seq.genomic.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.genomic.gdc_realn.bam 8496679012 BAM genomic harmonized CPTAC3 54eee2ab-eb37-42ac-9240-dd66f9914ee0 dee1f251904178cdc0080719b7c5c22c {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.RNA-Seq.S75_L008_R1.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R1_001.fastq.gz 3959065989 FASTQ S75_L008_R1 unaligned CPTAC3 69aa2a6b-6027-49f3-8e36-3103637b7cb1 f586ef1488c669bd02c714c1c2d03b51 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S75", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.RNA-Seq.S75_L008_R2.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ S75_L008_R2 unaligned CPTAC3 57e66976-7cfd-4dc7-960f-61b01cf53055 73c04986bc63d9b19b1f402db7a33eba {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S75", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04113.REP_ede9be20.RNA-Seq.transcriptome.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.transcriptome.gdc_realn.bam 11134146453 BAM transcriptome harmonized CPTAC3 4cde65d1-ae2e-48f9-a702-c3e8297ce67f 33c754e614dd098f7de431a68e50082d {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor"} -C3N-04113.RNA-Seq.chimeric.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.chimeric.gdc_realn.bam 30020882 BAM chimeric harmonized CPTAC3 a6b7bb5f-2cb9-4802-a2bf-04b099fe6fd8 bd42281aab61d67a75d9320f54f96516 {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor"} -C3N-04113.RNA-Seq.genomic.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.genomic.gdc_realn.bam 7257351546 BAM genomic harmonized CPTAC3 201c17d4-8c5f-4c8c-8fa4-829c9f0dbe0c 35d54c7703ced563e74531de43a3e077 {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor"} -C3N-04113.RNA-Seq.S3_L004_R1.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ S3_L004_R1 unaligned CPTAC3 9f0d3283-518d-4cbe-ac56-7f4cff984a77 2f081d269ba4839f78a1af74095b73b1 {"aliquot_tag": "ALQ_62a94b80", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04113.RNA-Seq.S3_L004_R2.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R2_001.fastq.gz 3851534424 FASTQ S3_L004_R2 unaligned CPTAC3 1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95 99f25205d09e2947c289dc0c34d3a98a {"aliquot_tag": "ALQ_62a94b80", "sample": "S3", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04113.RNA-Seq.transcriptome.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.transcriptome.gdc_realn.bam 8067312754 BAM transcriptome harmonized CPTAC3 9cc14cb9-79f2-4ddf-af13-ee6ae1c90e66 ed8209e2f8ce60d78a1b44744aefa540 {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor"} -C3N-04113.WGS.N C3N-04113 GBM WGS blood_normal CPT0285650002 CPT0285650002.WholeGenome.RP-2158.bam 29591689611 BAM aligned CPTAC3 88491985-2778-4634-b8ed-32a17626ad72 c9b4212007523ca3edf8027e82338068 {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal"} -C3N-04113.WGS.N.hg38 C3N-04113 GBM WGS blood_normal CPT0285650002 48f76814-e8a6-4689-ae08-37a3da4fbccf_wgs_gdc_realn.bam 91183903789 BAM harmonized CPTAC3 8a56868d-6456-4125-bd94-c89e0afdaeff fb7343f4e4926483b47990f66b663bd0 {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal"} -C3N-04113.WGS.T C3N-04113 GBM WGS tumor CPT0285620006 CPT0285620006.WholeGenome.RP-2158.bam 27745088896 BAM aligned CPTAC3 80115334-9ece-488f-b05f-03c26f207441 a09f615b04e741e7315b3f5d8bcfd439 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor"} -C3N-04113.WGS.T.hg38 C3N-04113 GBM WGS tumor CPT0285620006 5ad1a3d2-831b-405d-b7d9-7e1728337e25_wgs_gdc_realn.bam 81872292228 BAM harmonized CPTAC3 b4fdd133-7457-4a99-9621-b06aad5f7def 54953303ba85b449d8be407f0aaf75a4 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor"} -C3N-04113.WXS.N C3N-04113 GBM WXS blood_normal CPT0285650002 CPT0285650002.WholeExome.RP-1303.bam 29786208134 BAM aligned CPTAC3 f0c8c00e-1b52-496e-9eaf-09da2938df9b 2d27afb21276d6f25ebad2c1b91406eb {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal"} -C3N-04113.WXS.N.hg38 C3N-04113 GBM WXS blood_normal CPT0285650002 48f76814-e8a6-4689-ae08-37a3da4fbccf_wxs_gdc_realn.bam 40739124735 BAM harmonized CPTAC3 a4e8f80c-7798-4472-9e9d-8a6cb4bfe9c5 34464320bcf13f1ad7f86e846160f5e5 {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal"} -C3N-04119.MethArray.Green.A C3N-04119 PDA Methylation_Array tissue_normal CPT0237920007 203273630048_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 92c2f356-545e-4080-8b2a-df898113c2ee ab88e89c17d3c712f4f54cd23639f02d {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04119.MethArray.Green.T C3N-04119 PDA Methylation_Array tumor CPT0237910007 203561620008_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 efc75b36-c1da-4fa7-948f-a798a4838b5a 1ad15d30a97dd35e2791a5eb80f8e5d7 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor"} -C3N-04119.MethArray.Red.A C3N-04119 PDA Methylation_Array tissue_normal CPT0237920007 203273630048_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 03788187-1968-4a9d-8159-8cb73bbaaddd b00f902b97796d104ffa1093ef3253be {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04119.MethArray.Red.T C3N-04119 PDA Methylation_Array tumor CPT0237910007 203561620008_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 b5cacf99-32bb-44be-8568-bd50d2fba147 98f20e4937f894ff6dd4e3027452b630 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor"} -C3N-04119.miRNA-Seq.S13_L004_R1.T C3N-04119 PDA miRNA-Seq tumor CPT0237910010 190712_UNC32-K00270_0192_BH7HL3BBXY_CGGAAT_S13_L004_R1_001.unaln.bam 358918176 BAM S13_L004_R1 unaligned CPTAC3 6b31c026-40a9-44f1-b878-3a326b40c882 bba2acc3ea86fe7634daad51e033ac40 {"aliquot_tag": "ALQ_7e6d071f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04119.miRNA-Seq.T.hg38 C3N-04119 PDA miRNA-Seq tumor CPT0237910010 b0ecf8cb-8488-41b2-9307-9b0fa9e88da3_mirnaseq_gdc_realn.bam 407416981 BAM harmonized CPTAC3 1389286c-e645-49b2-ba4b-b1851dc9a64a 82a005ac6d5555c4246f7fc8bb054687 {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor"} -C3N-04119.RNA-Seq.chimeric.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.chimeric.gdc_realn.bam 29830003 BAM chimeric harmonized CPTAC3 e197cb7e-a520-4e4f-b77c-25379314cfdf ac005f7bca0d213aea818676d4f273d8 {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor"} -C3N-04119.RNA-Seq.genomic.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.genomic.gdc_realn.bam 8114440100 BAM genomic harmonized CPTAC3 ca6322ce-f6c8-44d7-bf7a-532bfda010ec b7b6f0f84518f68e82bd2999c9aa4963 {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor"} -C3N-04119.RNA-Seq.S11_L003_R1.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R1_001.fastq.gz 3762694137 FASTQ S11_L003_R1 unaligned CPTAC3 b8acb834-0c9a-426c-9a01-e28264df125e 2e519a5b9e715b1fc6d5b4b74af9e81f {"aliquot_tag": "ALQ_7e6d071f", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04119.RNA-Seq.S11_L003_R2.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R2_001.fastq.gz 4189091389 FASTQ S11_L003_R2 unaligned CPTAC3 e56a5b19-b947-4c5a-a590-c6dc5851a6d7 c4a1c7969b5f5b45bf259df399387c32 {"aliquot_tag": "ALQ_7e6d071f", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04119.RNA-Seq.transcriptome.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.transcriptome.gdc_realn.bam 10657869193 BAM transcriptome harmonized CPTAC3 a3900c02-d514-4b04-a8a3-21cbbb94b9fd 7c07875161970812801d74c9dd23edab {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor"} -C3N-04119.WGS.N C3N-04119 PDA WGS blood_normal CPT0237960002 CPT0237960002.WholeGenome.RP-1303.bam 71311817107 BAM aligned CPTAC3 4fdcf32b-0fba-4159-a1ca-a7e911ecdece 01dce3165a605481ab9504e9f67e713d {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04119.WGS.N.hg38 C3N-04119 PDA WGS blood_normal CPT0237960002 bfe5b115-f317-44bc-ae72-595d9a0fe7ad_wgs_gdc_realn.bam 103986103989 BAM harmonized CPTAC3 b8610c14-73e9-485b-9f23-36594cc52aaf c25a3e2db71f54b9b01648fe6bef3c17 {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04119.WGS.T C3N-04119 PDA WGS tumor CPT0237910007 CPT0237910007.WholeGenome.RP-1303.bam 145323251205 BAM aligned CPTAC3 0dd44f45-7e49-42d1-bd80-944296546768 9f271b2ccdf5a674f4dc656c095f4fda {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor"} -C3N-04119.WGS.T.hg38 C3N-04119 PDA WGS tumor CPT0237910007 eb856f0f-f9f8-4ef3-bcd7-824049ed9109_wgs_gdc_realn.bam 213343063223 BAM harmonized CPTAC3 1becad3b-33c5-4bad-b7ee-20ee2603f398 ad4a2d85525b11b140d1e1059daeae16 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor"} -C3N-04119.WXS.A C3N-04119 PDA WXS tissue_normal CPT0237920007 CPT0237920007.WholeExome.RP-1303.bam 24527691124 BAM aligned CPTAC3 dccf4d38-618c-4d59-8616-1a9bb36c7a0a b6948604123054268dab43c12d17b038 {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04119.WXS.A.hg38 C3N-04119 PDA WXS tissue_normal CPT0237920007 33f12f56-3c44-4a04-8d7c-e52f71a5fb44_wxs_gdc_realn.bam 32992142411 BAM harmonized CPTAC3 f46dc19d-6046-4653-a231-2713c86decf8 cad482a94c1887a3bc06d7986a4c8999 {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04119.WXS.N C3N-04119 PDA WXS blood_normal CPT0237960002 CPT0237960002.WholeExome.RP-1303.bam 25563489185 BAM aligned CPTAC3 96adbda1-644a-43cf-98c2-f897e76a69bf c751ab81c8f1762c1eefae948241244b {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04119.WXS.N.hg38 C3N-04119 PDA WXS blood_normal CPT0237960002 bfe5b115-f317-44bc-ae72-595d9a0fe7ad_wxs_gdc_realn.bam 35287260526 BAM harmonized CPTAC3 abfd8f03-72a2-4d88-8b24-8f41d6b4ff7a fbe1ac5b5e250c78349e0e87b044792e {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04119.WXS.T C3N-04119 PDA WXS tumor CPT0237910007 CPT0237910007.WholeExome.RP-1303.bam 45477755365 BAM aligned CPTAC3 fcc03c59-6e22-4bae-91c9-6563f3e03f56 949755deecc0278cd8e72decd12637e0 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor"} -C3N-04119.WXS.T.hg38 C3N-04119 PDA WXS tumor CPT0237910007 eb856f0f-f9f8-4ef3-bcd7-824049ed9109_wxs_gdc_realn.bam 63560057138 BAM harmonized CPTAC3 92a2cc56-3493-4bdb-92f7-e86d64937b60 eb63566fa3b6bc70d4772463c93e1325 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor"} -C3N-04124.MethArray.Green.A C3N-04124 LSCC Methylation_Array tissue_normal CPT0237990006 203219650169_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 22ac14a5-590f-4003-b3c9-6557bb683a46 2a4f0656aaf46208272cd3eadc34b376 {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.MethArray.Green.T C3N-04124 LSCC Methylation_Array tumor CPT0237970010 203219650006_R07C01_Grn.idat 13676235 IDAT Green NA CPTAC3 ddaeaa7f-5206-486f-990e-cec8d970eddd eeeb8e4d6c6164c5bffca79b37180c77 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor"} -C3N-04124.MethArray.Red.A C3N-04124 LSCC Methylation_Array tissue_normal CPT0237990006 203219650169_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 fab80ef4-02af-45e1-ad31-ed0a2953aeff e43da38115de5e094547d56dfeb9e944 {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.MethArray.Red.T C3N-04124 LSCC Methylation_Array tumor CPT0237970010 203219650006_R07C01_Red.idat 13676235 IDAT Red NA CPTAC3 0bffdc1c-9b1c-4bbb-b890-248739d92c7e f1ff821723226cfd316d4fed5ef263b7 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor"} -C3N-04124.miRNA-Seq.A.hg38 C3N-04124 LSCC miRNA-Seq tissue_normal CPT0237990009 8dc7a7c9-717d-422d-ac25-de06922510f9_mirnaseq_gdc_realn.bam 235671946 BAM harmonized CPTAC3 4c695e6f-37e6-4bbf-98b5-9a42b401fa3b 4ec2a70397f3f6f6724f25340c4b6f20 {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.miRNA-Seq.S11_L005_R1.A C3N-04124 LSCC miRNA-Seq tissue_normal CPT0237990009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTCAGA_S11_L005_R1_001.unaln.bam 212713260 BAM S11_L005_R1 unaligned CPTAC3 cd41e3ac-3b2e-4c6a-977b-b7e98809a251 819a86b837517e69dcf84721443711cb {"aliquot_tag": "ALQ_2edac53b", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.miRNA-Seq.S4_L005_R1.T C3N-04124 LSCC miRNA-Seq tumor CPT0237970007 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGAAG_S4_L005_R1_001.unaln.bam 141260252 BAM S4_L005_R1 unaligned CPTAC3 da02f697-9aa6-4bea-914b-eac0633d0b62 20f607e55b3ee6b1a76a1284afb9fe93 {"aliquot_tag": "ALQ_7652565d", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04124.miRNA-Seq.T.hg38 C3N-04124 LSCC miRNA-Seq tumor CPT0237970007 b45e99ad-e3ed-4528-9875-2082923fba8b_mirnaseq_gdc_realn.bam 159372384 BAM harmonized CPTAC3 aeca6b53-14e5-492e-acc6-bfa5d3b9df8d cb472c70813778fb8f5de1d93d4813fe {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor"} -C3N-04124.RNA-Seq.chimeric.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.chimeric.gdc_realn.bam 67436184 BAM chimeric harmonized CPTAC3 d27582ad-38bb-4146-a147-766f5c4a72da 850a3905932a7d8c743b64e8ec5b20ce {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.RNA-Seq.chimeric.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.chimeric.gdc_realn.bam 81305870 BAM chimeric harmonized CPTAC3 7576aa30-7371-47ae-ad87-19f799492afa 996a472420f9a6e674e6a479c91539ac {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor"} -C3N-04124.RNA-Seq.genomic.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.genomic.gdc_realn.bam 6279010419 BAM genomic harmonized CPTAC3 e6e9400d-914e-4766-b909-4e8f081393e6 b3c3168abce27f3033337ad25480b235 {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.RNA-Seq.genomic.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.genomic.gdc_realn.bam 7504027970 BAM genomic harmonized CPTAC3 a802d1fc-df18-4531-9ed6-bcf57db44bd4 a680def1c0f0161f65b1a9a2ce7dfde3 {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor"} -C3N-04124.RNA-Seq.S10_L003_R1.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R1_001.fastq.gz 3424985645 FASTQ S10_L003_R1 unaligned CPTAC3 e91f5b56-8457-4d6e-9318-67ee1dd7e479 c4eda7fc49ae4728772355cd9751a37b {"aliquot_tag": "ALQ_7652565d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04124.RNA-Seq.S10_L003_R2.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R2_001.fastq.gz 3710808570 FASTQ S10_L003_R2 unaligned CPTAC3 bf6eca83-92e5-4d01-9c37-9251246c999f 87b86c2bdab6bd64e9e29832c4523502 {"aliquot_tag": "ALQ_7652565d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04124.RNA-Seq.S6_L002_R1.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R1_001.fastq.gz 3030908637 FASTQ S6_L002_R1 unaligned CPTAC3 50e5a385-7c1b-407e-adff-0ded34d28d49 1066e63a38510967d3d51d4f566c6d19 {"aliquot_tag": "ALQ_2edac53b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.RNA-Seq.S6_L002_R2.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R2_001.fastq.gz 3048395136 FASTQ S6_L002_R2 unaligned CPTAC3 22917d3e-dcaf-42ad-9fb1-47ea45c06f21 85397e2d07a28f33e74a95eee6501b33 {"aliquot_tag": "ALQ_2edac53b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.RNA-Seq.transcriptome.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.transcriptome.gdc_realn.bam 7081252380 BAM transcriptome harmonized CPTAC3 72d72512-9419-4c01-9389-809abc704abf df8e5d86d542a36a67a00e91d44e4d4c {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.RNA-Seq.transcriptome.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.transcriptome.gdc_realn.bam 8448184012 BAM transcriptome harmonized CPTAC3 bc05b469-09a6-4030-8f5f-ecb0b4b06b29 1388ffc6ff0042f127283eb4f66a0745 {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor"} -C3N-04124.WGS.N C3N-04124 LSCC WGS blood_normal CPT0238030002 CPT0238030002.WholeGenome.RP-1303.bam 59391008128 BAM aligned CPTAC3 dac2b680-c4e7-4cd6-a0d8-7fc03fa01ede afc9ec51dcb46b46d45aa318dd45912a {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal"} -C3N-04124.WGS.N.hg38 C3N-04124 LSCC WGS blood_normal CPT0238030002 161e1a4d-b9b1-42fe-8399-2bc263936720_wgs_gdc_realn.bam 87586410762 BAM harmonized CPTAC3 9f83f046-a892-448f-92ff-0d84f2d9d9c3 7cd1ee7674fb19fc4f6a8e30e2a8108a {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal"} -C3N-04124.WGS.T C3N-04124 LSCC WGS tumor CPT0237970010 CPT0237970010.WholeGenome.RP-1303.bam 61597712549 BAM aligned CPTAC3 1d3d134f-ccd9-4e88-9146-2c302b07e303 ee88fad0e221c655a9d665624e809e5b {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor"} -C3N-04124.WGS.T.hg38 C3N-04124 LSCC WGS tumor CPT0237970010 0a7bcec4-396e-4a43-a17b-fca1aebf4e5e_wgs_gdc_realn.bam 90974854821 BAM harmonized CPTAC3 158d370c-a4a4-480e-bd8a-ee046d107d3b 5c7e8953e016272229f571f2cb284f8d {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor"} -C3N-04124.WXS.A C3N-04124 LSCC WXS tissue_normal CPT0237990006 CPT0237990006.WholeExome.RP-1303.bam 17092107194 BAM aligned CPTAC3 bcdc0962-da40-4c2b-8391-a0118a5c55d1 3ab957ed49dfc626b8f2aa8e4bc40248 {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.WXS.A.hg38 C3N-04124 LSCC WXS tissue_normal CPT0237990006 580cd9de-5d69-42af-832b-c88756d8006f_wxs_gdc_realn.bam 23865027921 BAM harmonized CPTAC3 6b0a09ca-9272-4c7d-9f99-91ffb19ff34a 245179634cb9b40aa6b2ceeaf74e28af {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04124.WXS.N C3N-04124 LSCC WXS blood_normal CPT0238030002 CPT0238030002.WholeExome.RP-1303.bam 22558182037 BAM aligned CPTAC3 747aec44-3fcc-4ce3-9893-7114f2dee9b4 671e786555bc34e01544b398112040be {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal"} -C3N-04124.WXS.N.hg38 C3N-04124 LSCC WXS blood_normal CPT0238030002 161e1a4d-b9b1-42fe-8399-2bc263936720_wxs_gdc_realn.bam 31497467430 BAM harmonized CPTAC3 45bbd6b6-b949-43fa-a5be-5eaf426405b6 7e6417b7eb00e02f9b95030942e73a7f {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal"} -C3N-04124.WXS.T C3N-04124 LSCC WXS tumor CPT0237970010 CPT0237970010.WholeExome.RP-1303.bam 29704534966 BAM aligned CPTAC3 a1622e4e-b685-41f3-a5c5-794c36ab0c77 2979cd9ee543a3ed84769827c3817763 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor"} -C3N-04124.WXS.T.hg38 C3N-04124 LSCC WXS tumor CPT0237970010 0a7bcec4-396e-4a43-a17b-fca1aebf4e5e_wxs_gdc_realn.bam 41431277364 BAM harmonized CPTAC3 80431699-b13f-4a48-bf2f-a30e17a2db53 59df658dc2387c073faf4cac2102c022 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor"} -C3N-04125.MethArray.Green.A C3N-04125 LSCC Methylation_Array tissue_normal CPT0330820006 204930630107_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f47b92c7-d60f-49ba-a64f-50c72196431d 3e4407636904b55647a3d69f6ed6c462 {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.MethArray.Green.T C3N-04125 LSCC Methylation_Array tumor CPT0330800007 204930640082_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 64fb4df4-23b3-499a-b9c1-ff282b559259 36f7da5dc50c55634d65431366de8f84 {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor"} -C3N-04125.MethArray.Red.A C3N-04125 LSCC Methylation_Array tissue_normal CPT0330820006 204930630107_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 632febd6-883a-4bb6-9de2-f2da8326c84f d850b73017bb4f5b2fd1aca8943c2a8a {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.MethArray.Red.T C3N-04125 LSCC Methylation_Array tumor CPT0330800007 204930640082_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 65c1e59a-fe3f-424b-9d5c-c7749eb0fce6 1af2174a4263d093f2db6a8d330fc0e8 {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor"} -C3N-04125.miRNA-Seq.A.hg38 C3N-04125 LSCC miRNA-Seq tissue_normal CPT0330820009 abf649e2-0f4c-42f4-a964-a35cb20be110_mirnaseq_gdc_realn.bam 259225378 BAM harmonized CPTAC3 765ab5e6-a4e3-4744-adf9-7e4ceb9d7776 0d721493bc2e8c869a379a707008723b {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.miRNA-Seq.S25_L007_R1.T C3N-04125 LSCC miRNA-Seq tumor CPT0330800010 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTTCC_S25_L007_R1_001.unaln.bam 346270654 BAM S25_L007_R1 unaligned CPTAC3 cf729db9-03ae-4db8-a5c9-a9468f1fb0bd 69d9dac7d93933b53155578f2eaf0949 {"aliquot_tag": "ALQ_5a8dd7c7", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04125.miRNA-Seq.S7_L007_R1.A C3N-04125 LSCC miRNA-Seq tissue_normal CPT0330820009 201209_UNC32-K00270_0265_AHJ55WBBXY_CACCGG_S7_L007_R1_001.unaln.bam 235786181 BAM S7_L007_R1 unaligned CPTAC3 be8395f3-aa6b-4335-8fe3-8c714754796e c664bf44dab3c25a462fda24334fb153 {"aliquot_tag": "ALQ_408a0d42", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.miRNA-Seq.T.hg38 C3N-04125 LSCC miRNA-Seq tumor CPT0330800010 ca62a282-1699-4bcb-8b96-35a13cc1a2c6_mirnaseq_gdc_realn.bam 382619328 BAM harmonized CPTAC3 1917b218-3fad-4250-88a4-ae9f669ca623 190bc741176fc58870974dd7ae0c619b {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor"} -C3N-04125.RNA-Seq.chimeric.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.chimeric.gdc_realn.bam 242779375 BAM chimeric harmonized CPTAC3 d16dbce1-88ba-4580-a1eb-14e6ef745bbe d836d77485f4e13f47cd9fb259eb834a {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.RNA-Seq.chimeric.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.chimeric.gdc_realn.bam 271729178 BAM chimeric harmonized CPTAC3 de83dfd7-65c4-4aa3-b2c2-09d0de84f91e ab662e7dc195ba5dd3a75a588901469a {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor"} -C3N-04125.RNA-Seq.genomic.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.genomic.gdc_realn.bam 6246682953 BAM genomic harmonized CPTAC3 a2cf4d60-0d3c-4640-91f8-10015599cd24 709d48e3225ed7dffc911189d031ef1b {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.RNA-Seq.genomic.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.genomic.gdc_realn.bam 7579152848 BAM genomic harmonized CPTAC3 40057ec1-87db-4e6c-af78-728a0191957f 643b8988323d62c8c6872f55f2f64959 {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor"} -C3N-04125.RNA-Seq.S12_L003_R1.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 3093237294 FASTQ S12_L003_R1 unaligned CPTAC3 702ac9ca-7e6e-48ee-a162-13536b0378b6 8c682323deee4e1105e34700b9686249 {"aliquot_tag": "ALQ_408a0d42", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.RNA-Seq.S12_L003_R2.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 3271914743 FASTQ S12_L003_R2 unaligned CPTAC3 2fdfef3a-5922-4158-81fc-d9c462eb95e6 2a98d09075e8e73f0a532c0456946567 {"aliquot_tag": "ALQ_408a0d42", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.RNA-Seq.S28_L007_R1.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R1_001.fastq.gz 3905362326 FASTQ S28_L007_R1 unaligned CPTAC3 4f5333d2-f5e8-4238-93cc-a43a1d94750e 65ad4f909f5752d94e987520e4809bea {"aliquot_tag": "ALQ_5a8dd7c7", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04125.RNA-Seq.S28_L007_R2.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R2_001.fastq.gz 4220282539 FASTQ S28_L007_R2 unaligned CPTAC3 e72caf0c-fb26-4d24-b284-a15ed7df1ed0 231c9af82aeb330b50ede11dfa74e3ca {"aliquot_tag": "ALQ_5a8dd7c7", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04125.RNA-Seq.transcriptome.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.transcriptome.gdc_realn.bam 6708889573 BAM transcriptome harmonized CPTAC3 6fe2941b-a2de-42f3-a59f-d6b623a78d94 579d5411c6be779d143171a3e67d90cf {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.RNA-Seq.transcriptome.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.transcriptome.gdc_realn.bam 13733886163 BAM transcriptome harmonized CPTAC3 74d87c9a-4519-45b2-88cf-daea7d6dbd17 258737f25c5563276a27191845b78837 {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor"} -C3N-04125.WGS.N C3N-04125 LSCC WGS blood_normal CPT0330890002 CPT0330890002.WholeGenome.RP-2158.bam 23494158499 BAM aligned CPTAC3 9090021d-c5a0-4767-bfbb-cbe66143f9a5 45f2e2d633cd65ea929e79119aeff56b {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04125.WGS.N.hg38 C3N-04125 LSCC WGS blood_normal CPT0330890002 f7e61ace-2364-4c15-922a-027505c69855_wgs_gdc_realn.bam 69948689386 BAM harmonized CPTAC3 df89fa76-416d-4b99-923e-f200c4e7d39b a7adb3d0741e81576dab67c7c75443b1 {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04125.WGS.T C3N-04125 LSCC WGS tumor CPT0330800007 CPT0330800007.WholeGenome.RP-2158.bam 22713160615 BAM aligned CPTAC3 7c9b9f19-1419-4c85-99ce-14da8c77a074 54121c197ba837f0a22c892f6c324dc5 {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor"} -C3N-04125.WGS.T.hg38 C3N-04125 LSCC WGS tumor CPT0330800007 b7840b33-00c3-453a-af05-db06e1448187_wgs_gdc_realn.bam 68834926184 BAM harmonized CPTAC3 e59720d3-a3f7-44e5-ba2c-07754a80f3e7 ab090d8591adecfeb081d41c0ca6c72b {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor"} -C3N-04125.WXS.A C3N-04125 LSCC WXS tissue_normal CPT0330820006 CPT0330820006.WholeExome.RP-1303.bam 19769989073 BAM aligned CPTAC3 0acce9d3-f89c-4f80-ba9c-d7c92085faa4 0fc317a02e810dd1f178ca20ab0d43d9 {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.WXS.A.hg38 C3N-04125 LSCC WXS tissue_normal CPT0330820006 ef1d0274-c548-41d4-9b09-0a26e8fe5c02_wxs_gdc_realn.bam 27486307001 BAM harmonized CPTAC3 f1ef17fd-fc34-4814-a2dc-bae23111e3cc 30d0cd55c78c44132d00a5b18e75dc20 {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04125.WXS.N C3N-04125 LSCC WXS blood_normal CPT0330890002 CPT0330890002.WholeExome.RP-1303.bam 20926657494 BAM aligned CPTAC3 4091c798-b3a7-4ebf-bf7c-8a7cc2056390 a9809d4a337814a3ee6301f56d5d0f3c {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04125.WXS.N.hg38 C3N-04125 LSCC WXS blood_normal CPT0330890002 f7e61ace-2364-4c15-922a-027505c69855_wxs_gdc_realn.bam 29467914092 BAM harmonized CPTAC3 968f6fcc-eb5e-492d-b6cb-4d640d9d2cff c4714d881004967fac1dc31c72c0aec7 {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04125.WXS.T C3N-04125 LSCC WXS tumor CPT0330800007 CPT0330800007.WholeExome.RP-1303.bam 19641445624 BAM aligned CPTAC3 ba3a911e-f0de-4cc1-ad53-50ba0a3eda4e f39d8c19a751a81b00102097acbd7bdc {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor"} -C3N-04125.WXS.T.hg38 C3N-04125 LSCC WXS tumor CPT0330800007 b7840b33-00c3-453a-af05-db06e1448187_wxs_gdc_realn.bam 26947805505 BAM harmonized CPTAC3 e7104e56-5eb2-4d47-9917-f07123e3022a 35cbf73326f734f12d1f7485ed86639b {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor"} -C3N-04126.MethArray.Green.T C3N-04126 PDA Methylation_Array tumor CPT0238040008 203561450020_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ac999305-a5af-4b55-80f5-4c4e13e3338b 90a76284b2439a27889559a34cab9852 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor"} -C3N-04126.MethArray.Red.T C3N-04126 PDA Methylation_Array tumor CPT0238040008 203561450020_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 20963994-15a5-4666-8a85-b7f7e2dd7835 dca0e1f6635c852ed62c326632be6af0 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor"} -C3N-04126.miRNA-Seq.S14_L004_R1.T C3N-04126 PDA miRNA-Seq tumor CPT0238040011 190712_UNC32-K00270_0192_BH7HL3BBXY_CTAGCT_S14_L004_R1_001.unaln.bam 262982977 BAM S14_L004_R1 unaligned CPTAC3 45a79f8a-05be-4e50-b742-a1894c6a19ab 298792ef813e5cb355e8e0b98c7f0d63 {"aliquot_tag": "ALQ_10cd99d8", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04126.miRNA-Seq.T.hg38 C3N-04126 PDA miRNA-Seq tumor CPT0238040011 ea3d05c5-d103-44f7-bfbf-1b204471753d_mirnaseq_gdc_realn.bam 296371313 BAM harmonized CPTAC3 60a39e27-347b-4d29-83ad-89235bd5b4b0 970cd2bd1a755cbcabe4557544b52d79 {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor"} -C3N-04126.RNA-Seq.chimeric.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.chimeric.gdc_realn.bam 42726772 BAM chimeric harmonized CPTAC3 4fa21603-a840-4565-a14d-99d765def56c c9163ea880673a5151f8cfeeabf6e7ea {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor"} -C3N-04126.RNA-Seq.genomic.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.genomic.gdc_realn.bam 10206979343 BAM genomic harmonized CPTAC3 ffaa3ec7-af96-48af-ae09-27e22c35b21f 340287636b43103fed0ead7fbcc5e30b {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor"} -C3N-04126.RNA-Seq.S10_L003_R1.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R1_001.fastq.gz 4684069459 FASTQ S10_L003_R1 unaligned CPTAC3 35bc239c-6aff-408b-afa3-dcebcb5e3f05 220dd64d49f7e5ecc78dc03b31d29be3 {"aliquot_tag": "ALQ_10cd99d8", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04126.RNA-Seq.S10_L003_R2.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R2_001.fastq.gz 5065805986 FASTQ S10_L003_R2 unaligned CPTAC3 0c465402-f38f-49cb-9c73-bcc141ded2cf 9fc41b3323ea7f349a82592f9400e661 {"aliquot_tag": "ALQ_10cd99d8", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04126.RNA-Seq.transcriptome.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.transcriptome.gdc_realn.bam 11749325788 BAM transcriptome harmonized CPTAC3 829037c3-a4d4-4706-8677-1269b564f35a 2a77b72852cca541b45668f1f8b9212f {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor"} -C3N-04126.WGS.N C3N-04126 PDA WGS blood_normal CPT0238100002 CPT0238100002.WholeGenome.RP-1303.bam 60905500633 BAM aligned CPTAC3 c323fa59-8454-48c4-bdb6-dec49fee1680 19a83a083b9db1f7ffc53292b7800691 {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal"} -C3N-04126.WGS.N.hg38 C3N-04126 PDA WGS blood_normal CPT0238100002 7ca1a7f0-7de3-4ac6-9b56-af840d83d463_wgs_gdc_realn.bam 88803296322 BAM harmonized CPTAC3 e6899c13-9355-4f15-92c0-af79b70fcdf6 d341705ce3287295eebc4ea031a79695 {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal"} -C3N-04126.WGS.T C3N-04126 PDA WGS tumor CPT0238040008 CPT0238040008.WholeGenome.RP-1303.bam 141836154597 BAM aligned CPTAC3 c0a5ae9a-3aa2-4cf8-8cc3-9e8bc0bf2b2d ba3acee7c5931197d90cba951e5ccb1a {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor"} -C3N-04126.WGS.T.hg38 C3N-04126 PDA WGS tumor CPT0238040008 cda94bf3-c5f3-49b7-89ad-e31cf301f12d_wgs_gdc_realn.bam 207232661003 BAM harmonized CPTAC3 ad71fa8c-a7d8-474b-8218-8ecbb1bdf3d7 ae2ec5acf6d3c1041399cde50f1932a2 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor"} -C3N-04126.WXS.N C3N-04126 PDA WXS blood_normal CPT0238100002 CPT0238100002.WholeExome.RP-1303.bam 33018932612 BAM aligned CPTAC3 ac1dae34-e1df-40ef-8c50-32a13c58869c 91cbb62292987e5c3638e9a2c063506f {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal"} -C3N-04126.WXS.N.hg38 C3N-04126 PDA WXS blood_normal CPT0238100002 7ca1a7f0-7de3-4ac6-9b56-af840d83d463_wxs_gdc_realn.bam 45588567421 BAM harmonized CPTAC3 13130b21-bb87-4799-be7a-da3ed86175c3 8f1d694a39709bd863501aa60166a986 {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal"} -C3N-04126.WXS.T C3N-04126 PDA WXS tumor CPT0238040008 CPT0238040008.WholeExome.RP-1303.bam 43383882285 BAM aligned CPTAC3 ada4a56a-9f95-4d58-96a0-c425e2808fd4 74a31170bb369cd60a4e7882a5e3adf7 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor"} -C3N-04126.WXS.T.hg38 C3N-04126 PDA WXS tumor CPT0238040008 cda94bf3-c5f3-49b7-89ad-e31cf301f12d_wxs_gdc_realn.bam 60378221864 BAM harmonized CPTAC3 eac7d1ac-a38c-41cb-b38f-329cde637848 f2f4bfa1a258cde4681e615ce22672e7 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor"} -C3N-04127.MethArray.Green.A C3N-04127 LSCC Methylation_Array tissue_normal CPT0238130006 203219720203_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 ab279103-dc51-456c-9439-ef95fd8e3d55 c52827fc26f603626254316bd6eb517c {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.MethArray.Green.T C3N-04127 LSCC Methylation_Array tumor CPT0238110010 203220070151_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ec599e4a-1dc6-440d-bf91-e9b8ae76c88d 9c296fe432d6c019f7fb6dbd662f2c1a {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor"} -C3N-04127.MethArray.Red.A C3N-04127 LSCC Methylation_Array tissue_normal CPT0238130006 203219720203_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 a887ae74-a009-4c53-b59f-0637fe747a27 47c590a622fb596c032c1b071d536018 {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.MethArray.Red.T C3N-04127 LSCC Methylation_Array tumor CPT0238110010 203220070151_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 c7876edb-8294-46ee-aa76-a3a409305d6b dcd26df678c4b85039ab5c241c36bf45 {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor"} -C3N-04127.miRNA-Seq.A.hg38 C3N-04127 LSCC miRNA-Seq tissue_normal CPT0238130009 bbc297ef-1361-4d13-b3fa-8db816d19b83_mirnaseq_gdc_realn.bam 203090310 BAM harmonized CPTAC3 92fad97a-361c-4ca3-9e1b-cd5a89b71318 0bf2829e1f57e59c282e9844b86c0ad6 {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.miRNA-Seq.S10_L005_R1.A C3N-04127 LSCC miRNA-Seq tissue_normal CPT0238130009 190206_UNC31-K00269_0191_AH2WY5BBXY_GACGAC_S10_L005_R1_001.unaln.bam 179100710 BAM S10_L005_R1 unaligned CPTAC3 82102071-03b6-4622-8384-657162eb91f8 8bf9104e9c5075ececea3b337431ed95 {"aliquot_tag": "ALQ_7e712f1e", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.miRNA-Seq.S3_L005_R1.T C3N-04127 LSCC miRNA-Seq tumor CPT0238110007 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGGCA_S3_L005_R1_001.unaln.bam 145551348 BAM S3_L005_R1 unaligned CPTAC3 86d1796d-d349-41be-ad1d-73bc5081da60 85099cdff66b2fa992a2a9d46cb7f58c {"aliquot_tag": "ALQ_e3095179", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04127.miRNA-Seq.T.hg38 C3N-04127 LSCC miRNA-Seq tumor CPT0238110007 befe36fc-543d-445b-af9d-e4794497aa2e_mirnaseq_gdc_realn.bam 162460971 BAM harmonized CPTAC3 2c2319e5-118f-4cac-93f3-c6a07ecfeef8 8ded7aca8bfb74ab71c577fba45f784f {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor"} -C3N-04127.RNA-Seq.chimeric.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.chimeric.gdc_realn.bam 79246141 BAM chimeric harmonized CPTAC3 4a02f239-ea77-4e05-8595-d183bd0889b7 b83392cbfad9d64d6301a85be7c2770c {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.RNA-Seq.chimeric.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.chimeric.gdc_realn.bam 72920468 BAM chimeric harmonized CPTAC3 39e2337b-976c-4e46-a264-5cc90f36ed78 4cb53e57fab4110552396a6c6962b233 {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor"} -C3N-04127.RNA-Seq.genomic.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.genomic.gdc_realn.bam 9910411638 BAM genomic harmonized CPTAC3 e2d258fd-a677-48d2-b1d0-c508f82450c6 609a068a444dddfd9d769c8efd5af217 {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.RNA-Seq.genomic.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.genomic.gdc_realn.bam 7550047180 BAM genomic harmonized CPTAC3 9cf1bc14-fb91-41c5-bbc1-847d72211a08 2a8de2c76714270a86022bf7ea233627 {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor"} -C3N-04127.RNA-Seq.S12_L003_R1.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R1_001.fastq.gz 3356194614 FASTQ S12_L003_R1 unaligned CPTAC3 6d3b1cb1-6867-4e56-9338-2ac8c1bf659d 0afe2bf4ece2da589e3643fd1436b9d0 {"aliquot_tag": "ALQ_e3095179", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04127.RNA-Seq.S12_L003_R2.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R2_001.fastq.gz 3700840039 FASTQ S12_L003_R2 unaligned CPTAC3 3ab3cd4e-9ade-47ac-9a1b-242050f0d731 cb65a5d2de89878f8ca154bb9709f6b6 {"aliquot_tag": "ALQ_e3095179", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04127.RNA-Seq.S4_L007_R1.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R1_001.fastq.gz 4534378721 FASTQ S4_L007_R1 unaligned CPTAC3 ae07e32e-d225-422d-859a-71d95ae2ad13 832505c37c171e21e178309ced605c69 {"aliquot_tag": "ALQ_7e712f1e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.RNA-Seq.S4_L007_R2.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R2_001.fastq.gz 5236762817 FASTQ S4_L007_R2 unaligned CPTAC3 9c5814c9-8297-4011-9036-c8f311ff7c0a c6e642eb2bd11615849448c811f2ce65 {"aliquot_tag": "ALQ_7e712f1e", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.RNA-Seq.transcriptome.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.transcriptome.gdc_realn.bam 11293387427 BAM transcriptome harmonized CPTAC3 a52545de-5467-4e7b-ac8f-aee523eacf38 96cd6d99c09e30ccf978f05aa1a30c94 {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.RNA-Seq.transcriptome.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.transcriptome.gdc_realn.bam 9999790850 BAM transcriptome harmonized CPTAC3 3f03960e-6fd6-44a1-a1bb-4a5efec21803 0a51af3bc88c92921633d0ee4ebcba47 {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor"} -C3N-04127.WGS.N C3N-04127 LSCC WGS blood_normal CPT0238170002 CPT0238170002.WholeGenome.RP-1303.bam 54195489488 BAM aligned CPTAC3 4dd0fcef-d27e-4ac1-b947-88adfa1581db 10251931ce9b0acb55541e05009b03cb {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal"} -C3N-04127.WGS.N.hg38 C3N-04127 LSCC WGS blood_normal CPT0238170002 f41b6b00-bcda-49b7-81c6-5660d2da8d56_wgs_gdc_realn.bam 79207707961 BAM harmonized CPTAC3 e52b65fb-1537-4b1e-830c-ae5ca45be4dc b4795066090b31b4422046f7d67ec9c2 {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal"} -C3N-04127.WGS.T C3N-04127 LSCC WGS tumor CPT0238110010 CPT0238110010.WholeGenome.RP-1303.bam 64375878286 BAM aligned CPTAC3 864a7882-c289-4462-8655-91d0a3fd350c afd5bad4f609e06ae85126b824cc56f5 {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor"} -C3N-04127.WGS.T.hg38 C3N-04127 LSCC WGS tumor CPT0238110010 c1b6681d-491b-4738-a2a7-d3363b2b9f4e_wgs_gdc_realn.bam 94280348655 BAM harmonized CPTAC3 3ec95f53-5eda-456d-9d2c-220d7ec82c08 51b9fb853f90c5b6ccd9cab5945c5352 {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor"} -C3N-04127.WXS.A C3N-04127 LSCC WXS tissue_normal CPT0238130006 CPT0238130006.WholeExome.RP-1303.bam 22328470984 BAM aligned CPTAC3 9314abcc-37af-4545-90f0-d23bb272bebf 14f1c052e5f250070341c14c2d266963 {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.WXS.A.hg38 C3N-04127 LSCC WXS tissue_normal CPT0238130006 babd6c22-cafe-48ad-962b-4cf613bf9973_wxs_gdc_realn.bam 30620453203 BAM harmonized CPTAC3 e6284a1b-0655-49ae-9ef0-d643873aa9dc d9e93194ad2873ccd9d2a14efe3f09f1 {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04127.WXS.N C3N-04127 LSCC WXS blood_normal CPT0238170002 CPT0238170002.WholeExome.RP-1303.bam 25819868729 BAM aligned CPTAC3 048afda2-93cc-4e5c-94f0-72937153f694 860df76070331b35cd82dbe64778dacc {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal"} -C3N-04127.WXS.N.hg38 C3N-04127 LSCC WXS blood_normal CPT0238170002 f41b6b00-bcda-49b7-81c6-5660d2da8d56_wxs_gdc_realn.bam 35495837871 BAM harmonized CPTAC3 3dd87d7b-e998-40c8-811c-359e9f82a263 f248c31ad45d342431e15b24d6982b86 {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal"} -C3N-04127.WXS.T C3N-04127 LSCC WXS tumor CPT0238110010 CPT0238110010.WholeExome.RP-1303.bam 18751551737 BAM aligned CPTAC3 939830d0-5119-4a89-a4c5-b679534e68a9 3c5a13c3c9b44a47dc7543e862cf578a {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor"} -C3N-04127.WXS.T.hg38 C3N-04127 LSCC WXS tumor CPT0238110010 c1b6681d-491b-4738-a2a7-d3363b2b9f4e_wxs_gdc_realn.bam 26103182783 BAM harmonized CPTAC3 e83f0336-0a89-4545-8479-d1a1dc01d99d 1d7fc59be3cfcfe4c76f93b51202d72c {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor"} -C3N-04138.MethArray.Green.T C3N-04138 LSCC Methylation_Array tumor CPT0331000007 204930630086_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 04eca087-34b0-4f4b-a724-8ec1cdd910a2 146b15d1fdd5fd15453155fdb709173d {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor"} -C3N-04138.MethArray.Red.T C3N-04138 LSCC Methylation_Array tumor CPT0331000007 204930630086_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 7befd1fd-07d7-4825-b12a-951006970263 d9c5656ffacc9da24ccd4212c86fadca {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor"} -C3N-04138.miRNA-Seq.A.hg38 C3N-04138 LSCC miRNA-Seq tissue_normal CPT0331020006 ec1541d4-bfe8-466b-9b48-ee5e6230a261_mirnaseq_gdc_realn.bam 362181419 BAM harmonized CPTAC3 df46f43e-24b2-4a04-b799-408dce3ec502 8feb65c5a64055c585efb38db38bb756 {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04138.miRNA-Seq.S26_L007_R1.T C3N-04138 LSCC miRNA-Seq tumor CPT0331000010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGTCA_S26_L007_R1_001.unaln.bam 265870736 BAM S26_L007_R1 unaligned CPTAC3 c395220d-eea6-4cf2-ac5e-247384b3e3aa e3ec0c5d350fe3bda4f994ffae358aa7 {"aliquot_tag": "ALQ_10a95e1e", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04138.miRNA-Seq.S8_L006_R1.A C3N-04138 LSCC miRNA-Seq tissue_normal CPT0331020006 201209_UNC32-K00270_0265_AHJ55WBBXY_CACGAT_S8_L006_R1_001.unaln.bam 335240834 BAM S8_L006_R1 unaligned CPTAC3 8351eea0-1ee3-4047-b0da-6d7acbcad059 504f99927ceb546eb9d386d1bd163899 {"aliquot_tag": "ALQ_9a11990a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04138.miRNA-Seq.T.hg38 C3N-04138 LSCC miRNA-Seq tumor CPT0331000010 917361fd-a3b9-48ec-a961-72cf33c124b9_mirnaseq_gdc_realn.bam 282197753 BAM harmonized CPTAC3 f24f22ab-b573-4ff4-aa46-166513346b75 07bfd2e3a337bc113962d98edb0ed27d {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor"} -C3N-04138.RNA-Seq.chimeric.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.chimeric.gdc_realn.bam 129300260 BAM chimeric harmonized CPTAC3 82525903-dd8c-4251-858a-02371efb07e5 f419f3889048dbbd8869904bcc7f55fa {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04138.RNA-Seq.chimeric.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.chimeric.gdc_realn.bam 267487878 BAM chimeric harmonized CPTAC3 30be77c4-0c0d-4a89-8a39-674af1482398 e0edcf79a6ec5625f2edc988656a0cdf {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor"} -C3N-04138.RNA-Seq.genomic.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.genomic.gdc_realn.bam 5782022234 BAM genomic harmonized CPTAC3 fd251ce0-a9c6-4a9a-a080-c3cb0bc14e1e 69781f4dc4f9e2e2ac3baeffbba5b2f6 {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04138.RNA-Seq.genomic.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.genomic.gdc_realn.bam 8061105047 BAM genomic harmonized CPTAC3 48326000-1d18-48c1-ba2d-f42ef09bda00 23cc31b0616b051288793278a2a73569 {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor"} -C3N-04138.RNA-Seq.S10_L003_R1.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R1_001.fastq.gz 2765503985 FASTQ S10_L003_R1 unaligned CPTAC3 3e115e28-d175-4c14-ae40-3ccba22fab84 4c71f58330c7f6a52202857c7e0dc5be {"aliquot_tag": "ALQ_9a11990a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04138.RNA-Seq.S10_L003_R2.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R2_001.fastq.gz 2970136492 FASTQ S10_L003_R2 unaligned CPTAC3 3b79257c-871d-4e0e-99e7-3024bc78d0e1 cf1c9299608146bd271bcbd02438864f {"aliquot_tag": "ALQ_9a11990a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04138.RNA-Seq.S27_L007_R1.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R1_001.fastq.gz 4031983308 FASTQ S27_L007_R1 unaligned CPTAC3 3fc427a9-70d7-4182-a316-f528f080ccd8 ad91378fc02c95b5ab020ae3ca55e853 {"aliquot_tag": "ALQ_10a95e1e", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04138.RNA-Seq.S27_L007_R2.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R2_001.fastq.gz 4378549451 FASTQ S27_L007_R2 unaligned CPTAC3 12eebe5b-3249-49a2-9394-4cb8c0151e21 57abdf95bfe917a4a985a0ae9e3f2131 {"aliquot_tag": "ALQ_10a95e1e", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04138.RNA-Seq.transcriptome.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.transcriptome.gdc_realn.bam 6237704256 BAM transcriptome harmonized CPTAC3 397c388b-557a-41e0-8b49-c99fbfea0f69 6101427e637c22bc1ee1e3bb9699e126 {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04138.RNA-Seq.transcriptome.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.transcriptome.gdc_realn.bam 12309782023 BAM transcriptome harmonized CPTAC3 205fd9fa-671b-4a14-818f-d0f3a09562c2 3f63d294e4aff705c2b402546af0ce6c {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor"} -C3N-04138.WGS.N C3N-04138 LSCC WGS blood_normal CPT0331090002 CPT0331090002.WholeGenome.RP-2158.bam 21805976070 BAM aligned CPTAC3 dbc67567-3103-4284-80aa-b3f6bf3b0a65 811d1c1d9ef54ed3d57705133760d7ba {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal"} -C3N-04138.WGS.N.hg38 C3N-04138 LSCC WGS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wgs_gdc_realn.bam 64174428871 BAM harmonized CPTAC3 f3c3ad85-139b-44ab-993e-71819c0e8aed ed65c0ceecc3a03702cf2a464072171a {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal"} -C3N-04138.WGS.T C3N-04138 LSCC WGS tumor CPT0331000007 CPT0331000007.WholeGenome.RP-2158.bam 27914789343 BAM aligned CPTAC3 ef545b12-556c-4747-9567-1d471b7315f1 67d2d120b6842abc306d1d23010af99e {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor"} -C3N-04138.WGS.T.hg38 C3N-04138 LSCC WGS tumor CPT0331000007 643307d3-9e81-4b95-9874-c43004fd1203_wgs_gdc_realn.bam 84007956301 BAM harmonized CPTAC3 0aa40e0f-e8f0-48db-9519-aafe276c7fac 4bd89f758d65fbef72472b3922630a5b {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor"} -C3N-04138.WXS.N C3N-04138 LSCC WXS blood_normal CPT0331090002 CPT0331090002.WholeExome.RP-1303.bam 28694395073 BAM aligned CPTAC3 452ddcbf-da03-4208-8679-d7bc2f7a670f d04c9ffed3251467fe810e74c1d6c1e5 {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal"} -C3N-04138.WXS.N.hg38 C3N-04138 LSCC WXS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wxs_gdc_realn.bam 40369608923 BAM harmonized CPTAC3 fb6ee426-38fc-461a-b08f-dc6ba3fc6d53 a54f7f11a203362d83a50770cd69383c {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal"} -C3N-04138.WXS.T C3N-04138 LSCC WXS tumor CPT0331000007 CPT0331000007.WholeExome.RP-1303.bam 19694203636 BAM aligned CPTAC3 4d3904df-d98f-425b-902d-1d83fd6e3a1b 2083839e8ab1cbcbaa3b0c49bf5f9b9b {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor"} -C3N-04138.WXS.T.hg38 C3N-04138 LSCC WXS tumor CPT0331000007 643307d3-9e81-4b95-9874-c43004fd1203_wxs_gdc_realn.bam 27641153087 BAM harmonized CPTAC3 4cc82681-a96f-4cf5-88fb-17fe9301efc5 6f299b925e22a8609014f10e83f0319a {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor"} -C3N-04151.RNA-Seq.chimeric.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.chimeric.gdc_realn.bam 201299357 BAM chimeric harmonized CPTAC3 10305f60-0348-4c62-a527-ec17f842558d 33125b511db82795aab443c8deff3083 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor"} -C3N-04151.RNA-Seq.genomic.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.genomic.gdc_realn.bam 9613176271 BAM genomic harmonized CPTAC3 beeb8b6e-fa5f-4470-9b67-725b4831f61b 43a7a584c0ff42fed62b31ea091660f1 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor"} -C3N-04151.RNA-Seq.S40_R1.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R1_001.fastq.gz 5881869402 FASTQ S40_R1 unaligned CPTAC3 1d703603-8fb9-4fa5-b995-6c362b4c63bd 931204979bdfc0a588e7ba7a7e0de572 {"aliquot_tag": "ALQ_2d5ce63e", "sample": "S40", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04151.RNA-Seq.S40_R2.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R2_001.fastq.gz 6165305786 FASTQ S40_R2 unaligned CPTAC3 eda55b2a-4104-4793-8da2-e79b4826e144 c31b4d4cf95b297bf11644d2cca7f729 {"aliquot_tag": "ALQ_2d5ce63e", "sample": "S40", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04151.RNA-Seq.transcriptome.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.transcriptome.gdc_realn.bam 6174806206 BAM transcriptome harmonized CPTAC3 f408c514-33e0-4856-a57d-abefce025e52 938ce0ba9b7734b89bec39f9992edf50 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor"} -C3N-04152.MethArray.Green.A C3N-04152 HNSCC Methylation_Array tissue_normal CPT0224000006 203271740111_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 6a9d95d0-966f-4036-8ed8-980e9f25367c aa7a73beb38782b71f16bdf78c3f9167 {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.MethArray.Green.T C3N-04152 HNSCC Methylation_Array tumor CPT0223970006 203271750083_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f70db15c-d972-4771-a19f-e6cfe4fce5fc 55ddcaa2380adad074a79310c6a93f9e {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor"} -C3N-04152.MethArray.Red.A C3N-04152 HNSCC Methylation_Array tissue_normal CPT0224000006 203271740111_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 665b88f0-7e75-46ef-a394-52c77c818da1 099af1c28ef8daaeae486b76ae8e5dab {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.MethArray.Red.T C3N-04152 HNSCC Methylation_Array tumor CPT0223970006 203271750083_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 ed4ab37d-52e5-44c8-b038-7f2ee8768657 3d6c4c52626cf061470742c7c6c983dc {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor"} -C3N-04152.miRNA-Seq.A.hg38 C3N-04152 HNSCC miRNA-Seq tissue_normal CPT0224000009 599664c0-b576-40a6-b26d-6b954a7d7854_mirnaseq_gdc_realn.bam 272662681 BAM harmonized CPTAC3 01ed6502-f680-4751-a33c-015e1b1247a6 6334a11815c8143168b4a756153ad6bf {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.miRNA-Seq.S13_L005_R1.A C3N-04152 HNSCC miRNA-Seq tissue_normal CPT0224000009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L005_R1_001.unaln.bam 240382314 BAM S13_L005_R1 unaligned CPTAC3 57a22ee5-50bc-4bba-bde1-f4fd3124f591 417d3a191d2e3d180dd09859e4558ed8 {"aliquot_tag": "ALQ_f987ec81", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.miRNA-Seq.S29_L004_R1.T C3N-04152 HNSCC miRNA-Seq tumor CPT0223970009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L004_R1_001.unaln.bam 157288546 BAM S29_L004_R1 unaligned CPTAC3 54b745e2-d0e9-473f-b098-bed3f1619887 0fbac96c7ee18f88a99e490e9f98b00a {"aliquot_tag": "ALQ_a90f5fd7", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04152.miRNA-Seq.T.hg38 C3N-04152 HNSCC miRNA-Seq tumor CPT0223970009 47293791-e73b-4c9b-af0c-9094d632517d_mirnaseq_gdc_realn.bam 174631420 BAM harmonized CPTAC3 1ff1bfdf-5efb-41ef-9d58-708459dddc34 880e7dd7443690d7ddb0de5bb4725736 {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.chimeric.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.chimeric.gdc_realn.bam 29140297 BAM chimeric harmonized CPTAC3 12120245-0de2-4219-a570-1ce78a2e63ab ea19b3bb9fbce7573beb4f9d444493b9 {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.RNA-Seq.chimeric.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.chimeric.gdc_realn.bam 258737460 BAM chimeric harmonized CPTAC3 400850e8-37b3-47e5-975f-424cd88d3ff3 fef811c92587d7f94c5d568746bd80d8 {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.chimeric.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.chimeric.gdc_realn.bam 162896427 BAM chimeric harmonized CPTAC3 6dcb6efb-2668-450b-b94f-e9aca3bdf384 dd0eb48a072a78b2658dcc2879411f2e {"aliquot_tag": "ALQ_d3277c42", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.genomic.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.genomic.gdc_realn.bam 8650690199 BAM genomic harmonized CPTAC3 ab8382cb-505f-4050-8247-1d01fa93477e 17804308b6806fbcc47e8d0e6d4839ae {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.RNA-Seq.genomic.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.genomic.gdc_realn.bam 8789726788 BAM genomic harmonized CPTAC3 66094884-d08a-49a0-a61c-27e7b16c8533 efdb874f66714c1e780ecca03a55076d {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.genomic.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.genomic.gdc_realn.bam 8284010310 BAM genomic harmonized CPTAC3 b6c32021-f064-4367-ab0a-202242a3c1bf 66926e97895b17fbc6427954266a3ee6 {"aliquot_tag": "ALQ_d3277c42", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.S27_L006_R1.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R1_001.fastq.gz 4194048409 FASTQ S27_L006_R1 unaligned CPTAC3 0996e53b-0079-4766-84a8-fd2930e6c7e0 ef795f2ba7ac431a16c5f3ff17d9e403 {"aliquot_tag": "ALQ_f987ec81", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.RNA-Seq.S27_L006_R2.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R2_001.fastq.gz 4605646955 FASTQ S27_L006_R2 unaligned CPTAC3 6d81b875-ee76-4cb8-8e1d-2d8e8338800d d1791abfac19980fcf227d01d52d0469 {"aliquot_tag": "ALQ_f987ec81", "sample": "S27", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.RNA-Seq.S74_R1.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R1_001.fastq.gz 5124447192 FASTQ S74_R1 unaligned CPTAC3 ca9e9400-2b81-401b-a309-cfd1526a881a f7ded11042b7bd727db017f4bb8f22f9 {"aliquot_tag": "ALQ_d3277c42", "sample": "S74", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.S74_R2.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R2_001.fastq.gz 5360897002 FASTQ S74_R2 unaligned CPTAC3 617da4f7-6fc4-4ea9-bc81-c637d7670400 d0b57a15f400f8e10f4d63825de358d4 {"aliquot_tag": "ALQ_d3277c42", "sample": "S74", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.S9_L003_R1.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3915129007 FASTQ S9_L003_R1 unaligned CPTAC3 592d75c4-07b3-4b9f-9256-b3b8419d5b35 8c6de182cd3eb541b5d13c102086d8ad {"aliquot_tag": "ALQ_a90f5fd7", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.S9_L003_R2.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4453728627 FASTQ S9_L003_R2 unaligned CPTAC3 4f30070d-b7da-464c-abe7-92bb0cbfc671 db41ef7b319f4e22e5a40a75f8dd5611 {"aliquot_tag": "ALQ_a90f5fd7", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.transcriptome.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.transcriptome.gdc_realn.bam 12816884414 BAM transcriptome harmonized CPTAC3 9684b0b7-b469-472e-80bf-301ac6cfbabb 338537260c889f85fad3c317ce71a723 {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.RNA-Seq.transcriptome.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.transcriptome.gdc_realn.bam 11645886355 BAM transcriptome harmonized CPTAC3 94988e7a-2c1f-4aaa-94bd-5498a6eb252e 30607943f95b36f8e95fb4a94640c7d3 {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor"} -C3N-04152.RNA-Seq.transcriptome.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.transcriptome.gdc_realn.bam 4731182657 BAM transcriptome harmonized CPTAC3 42d1e38a-48bd-43cc-8519-954a182f19c9 8b2d4e43371e5e86d89836095634c6c4 {"aliquot_tag": "ALQ_d3277c42", "gdc_sample_type": "Primary Tumor"} -C3N-04152.WGS.N C3N-04152 HNSCC WGS blood_normal CPT0224090002 CPT0224090002.WholeGenome.RP-1303.bam 78306707451 BAM aligned CPTAC3 99cc4072-31ef-42e4-9fed-953a43db1706 be950352c585ba4dd6b5117e38c87882 {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal"} -C3N-04152.WGS.N.hg38 C3N-04152 HNSCC WGS blood_normal CPT0224090002 1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wgs_gdc_realn.bam 114941800553 BAM harmonized CPTAC3 cf5b4b80-e867-49b7-b668-6791a9c78a12 75abd5ad7fb6fd86aa154da0a0b6c27a {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal"} -C3N-04152.WGS.T C3N-04152 HNSCC WGS tumor CPT0223970006 CPT0223970006.WholeGenome.RP-1303.bam 66052492900 BAM aligned CPTAC3 511c3e3b-1223-4f21-86f6-5a377854ee72 a8e92f87b3c6cee81de45c6b38e06d66 {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor"} -C3N-04152.WGS.T.hg38 C3N-04152 HNSCC WGS tumor CPT0223970006 a6669705-0fcf-4d00-bb0e-d04dac02ec6f_wgs_gdc_realn.bam 96017317076 BAM harmonized CPTAC3 2f55c32e-f1ca-46a4-90b4-57bc4ad0b61e b5abeeeb1a8560829bbd6ebc9c4b6dea {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor"} -C3N-04152.WXS.A C3N-04152 HNSCC WXS tissue_normal CPT0224000006 CPT0224000006.WholeExome.RP-1303.bam 22331975758 BAM aligned CPTAC3 1dd9bc0b-67fa-4d95-9e88-99ede97d00db b44223c2e6682007338fb9c647c9aac5 {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.WXS.A.hg38 C3N-04152 HNSCC WXS tissue_normal CPT0224000006 4e28a145-062c-4cd5-a419-db788ebf8dd2_wxs_gdc_realn.bam 30916912632 BAM harmonized CPTAC3 9e7af6c9-28b6-4670-bd4d-9e863e369933 a18b9fb7a2217a8c5ede1d69a871149b {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04152.WXS.N C3N-04152 HNSCC WXS blood_normal CPT0224090002 CPT0224090002.WholeExome.RP-1303.bam 22742722573 BAM aligned CPTAC3 cf63bcf2-eefa-43f1-a60f-3a4e6cc83cdf b8588d3b72907efb3548a0337c7fcf83 {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal"} -C3N-04152.WXS.N.hg38 C3N-04152 HNSCC WXS blood_normal CPT0224090002 1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wxs_gdc_realn.bam 31011742430 BAM harmonized CPTAC3 d182cfa9-ce18-41e1-a75e-9012d3a4d590 8d1a00300506a2b4f87dababb7a42266 {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal"} -C3N-04152.WXS.T C3N-04152 HNSCC WXS tumor CPT0223970006 CPT0223970006.WholeExome.RP-1303.bam 22800065161 BAM aligned CPTAC3 921dcac7-6f04-4d81-8479-6d1d01a66a21 6b16a80d57bd6ef0457adb4ab6cb238a {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor"} -C3N-04152.WXS.T.hg38 C3N-04152 HNSCC WXS tumor CPT0223970006 a6669705-0fcf-4d00-bb0e-d04dac02ec6f_wxs_gdc_realn.bam 31866404405 BAM harmonized CPTAC3 2c751d69-412d-462c-b1b5-8b25e6b6f9cd 6666e0c150271c38a13bc2d1ac4f2409 {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor"} -C3N-04153.RNA-Seq.chimeric.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.chimeric.gdc_realn.bam 130018895 BAM chimeric harmonized CPTAC3 5f9f085b-4a8e-42fe-9bf3-0985f13d05bf a9ff1a1197de92326964988c1b1bbbbf {"aliquot_tag": "ALQ_6ac53e74", "gdc_sample_type": "Primary Tumor"} -C3N-04153.RNA-Seq.genomic.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.genomic.gdc_realn.bam 7698188775 BAM genomic harmonized CPTAC3 d1eab65e-1b37-479b-a3c7-fc38c53e9295 95680ebb3230407b94af5331be847b0a {"aliquot_tag": "ALQ_6ac53e74", "gdc_sample_type": "Primary Tumor"} -C3N-04153.RNA-Seq.S36_R1.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R1_001.fastq.gz 4814166545 FASTQ S36_R1 unaligned CPTAC3 1951dd3d-b3bd-4373-bd66-c9d8e031b122 6ec89c448bedc1e34f26181db6b991a6 {"aliquot_tag": "ALQ_6ac53e74", "sample": "S36", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04153.RNA-Seq.S36_R2.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R2_001.fastq.gz 5061610434 FASTQ S36_R2 unaligned CPTAC3 02683534-5fb5-4446-9fbf-3f71a7d1eb28 a402ca2a002ecfd874d99088d8fd0020 {"aliquot_tag": "ALQ_6ac53e74", "sample": "S36", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04153.RNA-Seq.transcriptome.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.transcriptome.gdc_realn.bam 5118912427 BAM transcriptome harmonized CPTAC3 c127de33-3dca-4f06-92e3-d051416fb966 ac705d24f9fc4f5c8d6c77ddde81f08e {"aliquot_tag": "ALQ_6ac53e74", "gdc_sample_type": "Primary Tumor"} -C3N-04155.MethArray.Green.A C3N-04155 LSCC Methylation_Array tissue_normal CPT0223820006 203219650065_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ca5763bf-5d1e-43d6-990c-82f43d5ce9fc 7a61814d6f9f51e70ccf785734d46867 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04155.MethArray.Green.T C3N-04155 LSCC Methylation_Array tumor CPT0223790006 203219650065_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 25002167-92d7-47aa-975a-499008b3ae01 f43d5264d1fe09be2f650d6d05012867 {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor"} -C3N-04155.MethArray.Red.A C3N-04155 LSCC Methylation_Array tissue_normal CPT0223820006 203219650065_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 fd9accea-5209-4d83-b3e9-231ca109eb80 4d28f52c3e29de24a32ba072fbde9fc4 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04155.MethArray.Red.T C3N-04155 LSCC Methylation_Array tumor CPT0223790006 203219650065_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 39c93522-378b-4271-9f10-0448112f5c54 3d475bf72d99d31cf5ccdfcd11cb39bc {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor"} -C3N-04155.miRNA-Seq.S13_L006_R1.T C3N-04155 LSCC miRNA-Seq tumor CPT0223790009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L006_R1_001.unaln.bam 224315099 BAM S13_L006_R1 unaligned CPTAC3 e1dafc40-9e2d-4383-a3b2-1453656accc8 ce7b2380f598eb284f66ff9e5529f7a1 {"aliquot_tag": "ALQ_2c3580c6", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04155.miRNA-Seq.T.hg38 C3N-04155 LSCC miRNA-Seq tumor CPT0223790009 da5d0274-376c-4cfe-a1ca-236b93a9b32d_mirnaseq_gdc_realn.bam 261978344 BAM harmonized CPTAC3 f5d2bb65-b200-4f4c-8ff5-f119aa9cce53 f7fe54f4465a043ffeff975a45ffa658 {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor"} -C3N-04155.RNA-Seq.chimeric.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.chimeric.gdc_realn.bam 60361160 BAM chimeric harmonized CPTAC3 953b7cea-b24c-4de5-b326-46e9f6d2a295 7148785525a0b1293b8a2a0498d46992 {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor"} -C3N-04155.RNA-Seq.genomic.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.genomic.gdc_realn.bam 9081337661 BAM genomic harmonized CPTAC3 862f40c9-a587-412f-89a0-e65a7ff7312f 87d32423e487e44a55db52a2a6019a2d {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor"} -C3N-04155.RNA-Seq.S2_L006_R1.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R1_001.fastq.gz 4223748945 FASTQ S2_L006_R1 unaligned CPTAC3 45c5331a-3808-400a-84a7-b7032b7d45de 985b5231d5e087e2de0e3232071f6b91 {"aliquot_tag": "ALQ_2c3580c6", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04155.RNA-Seq.S2_L006_R2.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R2_001.fastq.gz 4485362072 FASTQ S2_L006_R2 unaligned CPTAC3 8269e2b1-5920-47e5-b852-0ec27bd2d29e 2a01618e73f40544ffab034dfa2535aa {"aliquot_tag": "ALQ_2c3580c6", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04155.RNA-Seq.transcriptome.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.transcriptome.gdc_realn.bam 11466747049 BAM transcriptome harmonized CPTAC3 1ad65ff5-f3ff-41bd-9874-ba246549de5f cd97a900c66c3794ffc6a4110ddf9da1 {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor"} -C3N-04155.WGS.N C3N-04155 LSCC WGS blood_normal CPT0223910002 CPT0223910002.WholeGenome.RP-1303.bam 53210378576 BAM aligned CPTAC3 c743421e-44e7-4da0-a7be-8644ae05dd79 5d766b91369b8d2f11507fbd813813cd {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-04155.WGS.N.hg38 C3N-04155 LSCC WGS blood_normal CPT0223910002 4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wgs_gdc_realn.bam 77919095694 BAM harmonized CPTAC3 cad85f10-c277-4559-99fb-32517840e29a 6724a2a8136774493143394a89638efa {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-04155.WGS.T C3N-04155 LSCC WGS tumor CPT0223790006 CPT0223790006.WholeGenome.RP-1303.bam 62668740071 BAM aligned CPTAC3 bafa4975-e387-4741-99a9-a8b0d48b5157 e3974257519b6a8b0791b7feff6ad009 {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor"} -C3N-04155.WGS.T.hg38 C3N-04155 LSCC WGS tumor CPT0223790006 78718394-bc16-4c02-b49f-511db21da76c_wgs_gdc_realn.bam 88791753543 BAM harmonized CPTAC3 8bcc15f0-0132-4b03-9ba4-b134b6b7bb34 d471368c50c46a50d5713632af6f380d {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor"} -C3N-04155.WXS.A C3N-04155 LSCC WXS tissue_normal CPT0223820006 CPT0223820006.WholeExome.RP-1303.bam 24026911934 BAM aligned CPTAC3 aa034fc7-0014-494b-83c7-3cc2dbe47632 621bc057045795b8e0b30c914d232bf2 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04155.WXS.A.hg38 C3N-04155 LSCC WXS tissue_normal CPT0223820006 11fa2928-1d7a-49f6-9cd1-87c934b6ecaf_wxs_gdc_realn.bam 33143918129 BAM harmonized CPTAC3 449211e5-68a8-4c62-90d2-6f747b233564 94611d87b560b3707e7e9c24c2e1f305 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04155.WXS.N C3N-04155 LSCC WXS blood_normal CPT0223910002 CPT0223910002.WholeExome.RP-1303.bam 28905931555 BAM aligned CPTAC3 9541b8bc-8625-418b-bfea-0f6e668b4946 5df9dbe1be09476c68d7d8f6a80515f4 {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-04155.WXS.N.hg38 C3N-04155 LSCC WXS blood_normal CPT0223910002 4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wxs_gdc_realn.bam 39803597688 BAM harmonized CPTAC3 e178ecd2-6264-4ec0-bc22-2c22db576e5f 08b90ed4c1f2fbf4e85acaf0ac939e90 {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal"} -C3N-04155.WXS.T C3N-04155 LSCC WXS tumor CPT0223790006 CPT0223790006.WholeExome.RP-1303.bam 27432374996 BAM aligned CPTAC3 49b45954-a500-432c-8b5c-7fd92c2fa4c3 1f1938eb572b80275f85a563457888df {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor"} -C3N-04155.WXS.T.hg38 C3N-04155 LSCC WXS tumor CPT0223790006 78718394-bc16-4c02-b49f-511db21da76c_wxs_gdc_realn.bam 38063383676 BAM harmonized CPTAC3 a4161921-2f2d-4c03-bada-17523cad8eb9 909adda042eedb6e0fa4c619e811742e {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor"} -C3N-04157.MethArray.Green.A C3N-04157 LUAD Methylation_Array tissue_normal CPT0251200006 203561620016_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bbd9d62d-b19d-4fd4-857a-330a40e27d0c 2be2f030f2624136e3a42507472ca1af {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.MethArray.Green.T C3N-04157 LUAD Methylation_Array tumor CPT0251180006 203561450048_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62534f25-a644-4082-86db-2fc888d983ef 31ba2cfad4a1293cb31ef36cd15f7bd7 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor"} -C3N-04157.MethArray.Red.A C3N-04157 LUAD Methylation_Array tissue_normal CPT0251200006 203561620016_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 25304c76-afca-414c-aecb-10beecbb533f d6268f260ff0bc1e7fe15372f8af1e46 {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.MethArray.Red.T C3N-04157 LUAD Methylation_Array tumor CPT0251180006 203561450048_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 ada2464d-6bb3-4bae-9b98-9e58408c33f9 0b3b5b19120157a8e5fa656f136b589b {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor"} -C3N-04157.miRNA-Seq.A.hg38 C3N-04157 LUAD miRNA-Seq tissue_normal CPT0251200009 2707c58f-6966-4a2d-a985-2e8e1601c7d8_mirnaseq_gdc_realn.bam 243508556 BAM harmonized CPTAC3 d27940f3-e678-495e-a34d-3c5d832898bc 2f0ab54a9b26188d8d099877ba86b097 {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.miRNA-Seq.S20_L004_R1.T C3N-04157 LUAD miRNA-Seq tumor CPT0251180013 190712_UNC32-K00270_0192_BH7HL3BBXY_TATAAT_S20_L004_R1_001.unaln.bam 206201655 BAM S20_L004_R1 unaligned CPTAC3 1a63221d-85f5-48cd-8930-054f90ef2744 9a92a4c92db2979984c542ac310219ae {"aliquot_tag": "ALQ_a3988a04", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04157.miRNA-Seq.S37_L006_R1.A C3N-04157 LUAD miRNA-Seq tissue_normal CPT0251200009 190722_UNC31-K00269_0234_AH7VGTBBXY_TATAAT_S37_L006_R1_001.unaln.bam 218023784 BAM S37_L006_R1 unaligned CPTAC3 1fd5265e-7538-4d49-8831-095689a691be 4e73ba0e0e6f2c8efed3046e32927bf0 {"aliquot_tag": "ALQ_ecb26b34", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.miRNA-Seq.T.hg38 C3N-04157 LUAD miRNA-Seq tumor CPT0251180013 13a152b0-3ccf-4886-91cb-340a59bff3c3_mirnaseq_gdc_realn.bam 227056931 BAM harmonized CPTAC3 9a370143-301d-4574-8150-bc9ae101eab9 b738a0aadd6c8f34342eb5479dbfcde3 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor"} -C3N-04157.RNA-Seq.chimeric.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.chimeric.gdc_realn.bam 28712752 BAM chimeric harmonized CPTAC3 68d2f8e7-94ae-43f8-9350-60b2b7023f2f db2ba3c56c96d0a1d28d9777d85f19b4 {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.RNA-Seq.chimeric.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.chimeric.gdc_realn.bam 26941313 BAM chimeric harmonized CPTAC3 ded10bdb-88cc-417c-a5b6-3d3bca4dd94c e3f765bb2eddec61122222c3ec1f57c4 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor"} -C3N-04157.RNA-Seq.genomic.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.genomic.gdc_realn.bam 12804974156 BAM genomic harmonized CPTAC3 b4d9cb6f-d0b0-4328-9650-3c20b3233c3e eca574097f2f220b7d034c04b578327b {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.RNA-Seq.genomic.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.genomic.gdc_realn.bam 7584667596 BAM genomic harmonized CPTAC3 06eee5e5-c418-40aa-b7c8-e84e6370cff7 72deba56c2d417eb48eb99d84f1699c5 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor"} -C3N-04157.RNA-Seq.S3_L001_R1.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 4038517228 FASTQ S3_L001_R1 unaligned CPTAC3 ce00ba5d-0966-409c-9374-f87417c13f43 f35d9cf023038ce353c27d8f97f3975a {"aliquot_tag": "ALQ_ecb26b34", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.RNA-Seq.S3_L001_R1.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 3537356620 FASTQ S3_L001_R1 unaligned CPTAC3 17c4c6e0-c720-42a4-9468-1ff583b77600 716078a913798027f1feb6f40d7ee137 {"aliquot_tag": "ALQ_a3988a04", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04157.RNA-Seq.S3_L001_R2.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 4543386407 FASTQ S3_L001_R2 unaligned CPTAC3 48e7303d-c4cd-4b51-a2da-3b6270f5c3cc 982b026392d3a9dc4f6bee0d68eb2f09 {"aliquot_tag": "ALQ_ecb26b34", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.RNA-Seq.S3_L001_R2.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 3873947965 FASTQ S3_L001_R2 unaligned CPTAC3 c87793ec-46b5-4d9c-badf-c8067bfa0597 edb11e4df7a7611434c4192ef783b0f9 {"aliquot_tag": "ALQ_a3988a04", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04157.RNA-Seq.transcriptome.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.transcriptome.gdc_realn.bam 8865049646 BAM transcriptome harmonized CPTAC3 7545efab-dbd0-43d8-851d-182245fbb563 40d822282544291ac0a27cfae311522c {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.RNA-Seq.transcriptome.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.transcriptome.gdc_realn.bam 8993669239 BAM transcriptome harmonized CPTAC3 4063b478-ecd1-4594-89df-3c92df28098e 122cb07d82b2ed5edb1c5b726e8867c5 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor"} -C3N-04157.WGS.N C3N-04157 LUAD WGS blood_normal CPT0251290002 CPT0251290002.WholeGenome.RP-1303.bam 63029138165 BAM aligned CPTAC3 168f26f4-b3d5-40f1-b5ca-84127cbaac70 54802477d009d95e9da401d6aa2827c4 {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04157.WGS.N.hg38 C3N-04157 LUAD WGS blood_normal CPT0251290002 fee32560-8cce-466c-abf6-1a732c5ed2a0_wgs_gdc_realn.bam 91231808613 BAM harmonized CPTAC3 84153e0f-0b09-40db-b5b7-d65fe981258f 53154f2f54ca7f5a14822b01734459bf {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04157.WGS.T C3N-04157 LUAD WGS tumor CPT0251180006 CPT0251180006.WholeGenome.RP-1303.bam 59828491320 BAM aligned CPTAC3 c1fb8d89-d91a-4419-91ec-65d293b9821b 053feeba465532e38d9f83629feb91a6 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor"} -C3N-04157.WGS.T.hg38 C3N-04157 LUAD WGS tumor CPT0251180006 58547ca2-ad3a-435c-8475-e89753be99a7_wgs_gdc_realn.bam 86665697608 BAM harmonized CPTAC3 fa55fcc0-ac46-40cc-ad0f-56302e7ac4c2 d3fc8c1dcd48c719e0b79b56b93c28f4 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor"} -C3N-04157.WXS.A C3N-04157 LUAD WXS tissue_normal CPT0251200006 CPT0251200006.WholeExome.RP-1303.bam 19015726097 BAM aligned CPTAC3 8098db97-86d2-4f77-b6b5-e5820387b677 133195d736de342d13b18f12e69d9a36 {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.WXS.A.hg38 C3N-04157 LUAD WXS tissue_normal CPT0251200006 02ae89ac-c0af-4edb-8b97-049eff8170f8_wxs_gdc_realn.bam 26710973014 BAM harmonized CPTAC3 04b66161-f219-4e4b-8e3c-f018d780d4ec ca119ad59f390c94c4757a20e6fd2d8a {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04157.WXS.N C3N-04157 LUAD WXS blood_normal CPT0251290002 CPT0251290002.WholeExome.RP-1303.bam 26143535745 BAM aligned CPTAC3 4c08e906-c819-48fc-943a-74dd2d481bae 8845d715198f6ae6f32d9c794dc4d8ed {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04157.WXS.N.hg38 C3N-04157 LUAD WXS blood_normal CPT0251290002 fee32560-8cce-466c-abf6-1a732c5ed2a0_wxs_gdc_realn.bam 35885298377 BAM harmonized CPTAC3 d9a75f24-d422-459c-af8a-a9d8fff4cb16 567152aa0ef2842946295c1dd2a291da {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04157.WXS.T C3N-04157 LUAD WXS tumor CPT0251180006 CPT0251180006.WholeExome.RP-1303.bam 23062936324 BAM aligned CPTAC3 8c935b6d-cb54-454b-a936-0022196f2c4b dc7660db34cfaa5edc8c98eda21b321d {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor"} -C3N-04157.WXS.T.hg38 C3N-04157 LUAD WXS tumor CPT0251180006 58547ca2-ad3a-435c-8475-e89753be99a7_wxs_gdc_realn.bam 31605901682 BAM harmonized CPTAC3 b0f2ec05-6722-4e3d-941d-12ffb5a84979 67c2e9833d6a6992de0d48edcb4928e9 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor"} -C3N-04162.MethArray.Green.T C3N-04162 LSCC Methylation_Array tumor CPT0222730006 203219760065_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 142343ef-14b7-4ad7-ad97-c39e1fd83508 de5ea225094a570e45cecddec2135def {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor"} -C3N-04162.MethArray.Red.T C3N-04162 LSCC Methylation_Array tumor CPT0222730006 203219760065_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 40f49885-956a-4a63-9fe8-b71aa6ff4b1b 98d6f9699bf84ec075b4cd284aeac2e6 {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor"} -C3N-04162.miRNA-Seq.A.hg38 C3N-04162 LSCC miRNA-Seq tissue_normal CPT0222740006 cf1610b8-cd1a-40e0-baf1-8b008c7771ec_mirnaseq_gdc_realn.bam 167117706 BAM harmonized CPTAC3 f3b25a16-578e-428a-822e-469b6183e81d cddbe1ff8b042c9cd94204acf58f819d {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04162.miRNA-Seq.S37_L002_R1.T C3N-04162 LSCC miRNA-Seq tumor CPT0222730009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTTGTA_S37_L002_R1_001.unaln.bam 150984471 BAM S37_L002_R1 unaligned CPTAC3 04792287-cdb8-45c6-8137-e1b497570c1c e8e6ea46ee73faebf8c618ed89fe9713 {"aliquot_tag": "ALQ_c0f293d3", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04162.miRNA-Seq.S9_L005_R1.A C3N-04162 LSCC miRNA-Seq tissue_normal CPT0222740006 190206_UNC31-K00269_0191_AH2WY5BBXY_TAATCG_S9_L005_R1_001.unaln.bam 149494734 BAM S9_L005_R1 unaligned CPTAC3 41bc2504-7b02-49cb-bdac-77677c36763e c11094dd5e494b7c0de7f16df2b127ae {"aliquot_tag": "ALQ_e26d5252", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04162.miRNA-Seq.T.hg38 C3N-04162 LSCC miRNA-Seq tumor CPT0222730009 dd091697-f395-4671-95e2-b2bf2133a8ff_mirnaseq_gdc_realn.bam 164381081 BAM harmonized CPTAC3 cafe578d-6189-4c83-8deb-888401cbdc57 27069d7dc013620602a5c48c5a6276a7 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor"} -C3N-04162.RNA-Seq.chimeric.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.chimeric.gdc_realn.bam 147601459 BAM chimeric harmonized CPTAC3 0c30f0a6-f85a-4b6a-8bd6-44c649d668bc 12aa3ef7e8eed06148c1b9e170767921 {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04162.RNA-Seq.chimeric.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.chimeric.gdc_realn.bam 58014560 BAM chimeric harmonized CPTAC3 7b319e58-af09-42af-8228-35c5f3373b02 0ae5047698a2423f6dfaed297c352560 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor"} -C3N-04162.RNA-Seq.genomic.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.genomic.gdc_realn.bam 10129008281 BAM genomic harmonized CPTAC3 ccb539c4-8567-4c3e-93aa-d8ffd4736003 ec2a79108ea4c31278515dc2cd8567ac {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04162.RNA-Seq.genomic.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.genomic.gdc_realn.bam 8841113738 BAM genomic harmonized CPTAC3 7105963b-4879-42fd-9387-100b21c5462b 827395cb0255cbb78c68fcfdee22df94 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor"} -C3N-04162.RNA-Seq.S19_L005_R1.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R1_001.fastq.gz 3922357305 FASTQ S19_L005_R1 unaligned CPTAC3 ed1ec1fe-03c0-47b4-9922-147935abb916 d3663e2e9708bf7ed901b0b562a42144 {"aliquot_tag": "ALQ_c0f293d3", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04162.RNA-Seq.S19_L005_R2.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R2_001.fastq.gz 4239447924 FASTQ S19_L005_R2 unaligned CPTAC3 386d1cec-0df1-448c-a907-6c9967e1d7a6 f281fdb7f63b112e2099b041aa2e1555 {"aliquot_tag": "ALQ_c0f293d3", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04162.RNA-Seq.S7_L008_R1.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R1_001.fastq.gz 4231764884 FASTQ S7_L008_R1 unaligned CPTAC3 76a3f97a-3352-4be2-bed3-bdef4fd3596e b8b919b059876d7c6079323900e2b6be {"aliquot_tag": "ALQ_e26d5252", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04162.RNA-Seq.S7_L008_R2.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R2_001.fastq.gz 4513521442 FASTQ S7_L008_R2 unaligned CPTAC3 5473c738-dafa-4387-8108-b66d7ae02c66 3b66c06012aed495e2401dae660f411c {"aliquot_tag": "ALQ_e26d5252", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04162.RNA-Seq.transcriptome.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.transcriptome.gdc_realn.bam 9174118949 BAM transcriptome harmonized CPTAC3 d6ef0f6d-14c4-4108-a999-5bf7eeafe8ab bfcf60836e89349444a746f38f7f1783 {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04162.RNA-Seq.transcriptome.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.transcriptome.gdc_realn.bam 9213107903 BAM transcriptome harmonized CPTAC3 8d0ee8e1-6681-4a29-839b-ff8a85e8bc8b d70d94747070f5887cb1cbc2cd6de6b9 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor"} -C3N-04162.WGS.N C3N-04162 LSCC WGS blood_normal CPT0222830002 CPT0222830002.WholeGenome.RP-1303.bam 56410315192 BAM aligned CPTAC3 45c41b0d-5fc2-4420-bba3-04a77a59d642 fc4dd58a035e16ddabb2315d5c0b7ce1 {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal"} -C3N-04162.WGS.N.hg38 C3N-04162 LSCC WGS blood_normal CPT0222830002 6e1ee97c-2ad3-4780-832a-95fa396a62d4_wgs_gdc_realn.bam 82677184151 BAM harmonized CPTAC3 8a7829cf-beff-4e1f-9437-863117642312 a676c9cb6d4fcde845905f09886146d1 {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal"} -C3N-04162.WGS.T C3N-04162 LSCC WGS tumor CPT0222730006 CPT0222730006.WholeGenome.RP-1303.bam 56439561530 BAM aligned CPTAC3 fc043ab2-5067-4c5e-b81b-e31bbbce335e 0c4b5d706ba31fce2ac69c46d07df3ae {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor"} -C3N-04162.WGS.T.hg38 C3N-04162 LSCC WGS tumor CPT0222730006 fb4d7e5b-3eb4-4172-946e-1c7969324651_wgs_gdc_realn.bam 83365877457 BAM harmonized CPTAC3 544123c3-f2e2-467a-a08a-321eee4abf75 167c870235486a62aa8c2dcdeecaee7c {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor"} -C3N-04162.WXS.N C3N-04162 LSCC WXS blood_normal CPT0222830002 CPT0222830002.WholeExome.RP-1303.bam 22991806024 BAM aligned CPTAC3 aa916353-23fc-40f7-854c-e8f481ac93dd e6348d0b07b911d290cc44f1eb845bf1 {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal"} -C3N-04162.WXS.N.hg38 C3N-04162 LSCC WXS blood_normal CPT0222830002 6e1ee97c-2ad3-4780-832a-95fa396a62d4_wxs_gdc_realn.bam 32765666914 BAM harmonized CPTAC3 eeacb63b-2483-49da-95e6-e431a56887bb a3fd21be4449c1c5d2e9fc698c9370bb {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal"} -C3N-04162.WXS.T C3N-04162 LSCC WXS tumor CPT0222730006 CPT0222730006.WholeExome.RP-1303.bam 22822522121 BAM aligned CPTAC3 58e6fe64-3471-4172-bb38-fc1e223a21fd 62bb2502e3faa12fc5e915c15cd6b53f {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor"} -C3N-04162.WXS.T.hg38 C3N-04162 LSCC WXS tumor CPT0222730006 fb4d7e5b-3eb4-4172-946e-1c7969324651_wxs_gdc_realn.bam 31575892510 BAM harmonized CPTAC3 b35d2e25-9b85-4539-82b7-447dcf4d46a4 0f34bf292d1eeea8fa29936f979b334d {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor"} -C3N-04167.MethArray.Green.T C3N-04167 LSCC Methylation_Array tumor CPT0249050006 204367490029_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e21de324-7efc-4cea-a339-1728e075b4d7 cb21366e44dcaa584fbfb884cbebf1de {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor"} -C3N-04167.MethArray.Red.T C3N-04167 LSCC Methylation_Array tumor CPT0249050006 204367490029_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 4f2951e2-0f1a-483f-8c7a-913ee489ad59 98c3f65db7414c7f7dcc6289b1595da6 {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor"} -C3N-04167.miRNA-Seq.S11_L006_R1.T C3N-04167 LSCC miRNA-Seq tumor CPT0249050009 200224_UNC31-K00269_0267_AHC722BBXY_GGCTAC_S11_L006_R1_001.unaln.bam 238350119 BAM S11_L006_R1 unaligned CPTAC3 d05a452a-7015-46a6-a29a-3bda5e4f8a46 b18fd522683602cec0ff65f5e71353f2 {"aliquot_tag": "ALQ_96df0bb6", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04167.miRNA-Seq.T.hg38 C3N-04167 LSCC miRNA-Seq tumor CPT0249050009 f12c1f2e-078a-43d4-b1b6-798d34beb3d5_mirnaseq_gdc_realn.bam 260298458 BAM harmonized CPTAC3 f4cd913a-0692-406f-8c71-7705e4065cc0 e77511bba62d83f5c334d7f851d678fc {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor"} -C3N-04167.RNA-Seq.chimeric.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.chimeric.gdc_realn.bam 68556969 BAM chimeric harmonized CPTAC3 d95ce2d6-bc36-45d4-b121-a93ebb7b9a87 94c704e31cc45107a0cf169b4176579e {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor"} -C3N-04167.RNA-Seq.genomic.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.genomic.gdc_realn.bam 7683098486 BAM genomic harmonized CPTAC3 9cea4674-8212-43ac-a9c6-d0687ed787b7 51150a9fdd6024a270eff7d8b4a89408 {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor"} -C3N-04167.RNA-Seq.S27_L007_R1.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R1_001.fastq.gz 3708412646 FASTQ S27_L007_R1 unaligned CPTAC3 8fa96e75-2009-4b73-a20a-689d08d646dd e36c118d4314e5f896600fbdcff434aa {"aliquot_tag": "ALQ_96df0bb6", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04167.RNA-Seq.S27_L007_R2.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R2_001.fastq.gz 3918445251 FASTQ S27_L007_R2 unaligned CPTAC3 b52c5dd8-978c-4368-9368-102a5cac3a4a faaf72850759eebe788f28d0467a7f7d {"aliquot_tag": "ALQ_96df0bb6", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04167.RNA-Seq.transcriptome.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.transcriptome.gdc_realn.bam 9697583744 BAM transcriptome harmonized CPTAC3 f14d0f04-a3e9-4f1e-89ca-154ecd4f09b2 2dffb56df6cb71442dd8fb386cb38193 {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor"} -C3N-04167.WGS.N C3N-04167 LSCC WGS blood_normal CPT0249170002 CPT0249170002.WholeGenome.RP-2158.bam 24039273983 BAM aligned CPTAC3 e70f6494-f6c6-4a38-92ca-be988a887e1d 086eb339ffbe20bae163b653bf7343fe {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04167.WGS.N.hg38 C3N-04167 LSCC WGS blood_normal CPT0249170002 0675bc40-c123-4b18-a757-d78c4b35e44d_wgs_gdc_realn.bam 70803984910 BAM harmonized CPTAC3 2771a10d-8489-46ac-8cc4-3b167f93421f c1d739e0c13289d798cbdf914c5f388c {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04167.WGS.T C3N-04167 LSCC WGS tumor CPT0249050006 CPT0249050006.WholeGenome.RP-2158.bam 26382517132 BAM aligned CPTAC3 8e427eb2-b52e-4407-b5a1-5ab59953505d 032b6b8753fe22d298e5a97d0c506548 {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor"} -C3N-04167.WGS.T.hg38 C3N-04167 LSCC WGS tumor CPT0249050006 08585106-99a3-44b3-8df8-1d8ca02e0287_wgs_gdc_realn.bam 77140691801 BAM harmonized CPTAC3 137fb776-d437-4540-b758-a4da5a85994f 8571d0d562b32983f5b70efc4d0d0024 {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor"} -C3N-04167.WXS.N C3N-04167 LSCC WXS blood_normal CPT0249170002 CPT0249170002.WholeExome.RP-1303.bam 25357095563 BAM aligned CPTAC3 f68a9ec4-a53f-4c9d-87fc-5993e0776709 1379f72ffc7c62a3ba6b07fad4fc6efb {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04167.WXS.N.hg38 C3N-04167 LSCC WXS blood_normal CPT0249170002 0675bc40-c123-4b18-a757-d78c4b35e44d_wxs_gdc_realn.bam 34616296158 BAM harmonized CPTAC3 644f404d-2f8d-4ceb-8f41-152237028b33 082c058b791e9a8e9350d2a97cb94bab {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04167.WXS.T C3N-04167 LSCC WXS tumor CPT0249050006 CPT0249050006.WholeExome.RP-1303.bam 22845782341 BAM aligned CPTAC3 65e83103-eead-4b2e-8511-fc92419a484e 2715b9a8b14891dc9b2a2904b4ed63dc {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor"} -C3N-04167.WXS.T.hg38 C3N-04167 LSCC WXS tumor CPT0249050006 08585106-99a3-44b3-8df8-1d8ca02e0287_wxs_gdc_realn.bam 31412257076 BAM harmonized CPTAC3 ae9873b9-7f5e-4d2c-95c5-895a13dc00ea 4c52e9c6b78135897892207897d98ddc {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor"} -C3N-04168.MethArray.Green.A C3N-04168 LUAD Methylation_Array tissue_normal CPT0255870006 203561620132_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 94e58112-8502-4f56-ba46-dbb431aecf3f 8ba451f13a1da2bdd6a1997140adeb37 {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.MethArray.Green.T C3N-04168 LUAD Methylation_Array tumor CPT0251530006 203561450068_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 82cff2f1-46c2-4008-8b1b-54b3b7b0c3db a5a9f3092f728df274d1cbb3ea9b6427 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor"} -C3N-04168.MethArray.Red.A C3N-04168 LUAD Methylation_Array tissue_normal CPT0255870006 203561620132_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 e9b1d7b4-53df-4f9c-9831-26fb16e97918 b602a9337206525717bf44d4a981ccc0 {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.MethArray.Red.T C3N-04168 LUAD Methylation_Array tumor CPT0251530006 203561450068_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 26e5d2b2-7eeb-4485-bd2f-f5d37f914b17 6dd313b04d2e45e0edef6bd8dbdb506c {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor"} -C3N-04168.miRNA-Seq.A.hg38 C3N-04168 LUAD miRNA-Seq tissue_normal CPT0255870009 98232ab3-22e9-4d5c-b623-3a4feddd6395_mirnaseq_gdc_realn.bam 153258812 BAM harmonized CPTAC3 a2226e10-9cef-44c1-ac5b-5cc09a206801 c1b4096bb4793e2f08b662f57a7d0b4e {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.miRNA-Seq.S1_L007_R1.T C3N-04168 LUAD miRNA-Seq tumor CPT0251530009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACAGTG_S1_L007_R1_001.unaln.bam 197260928 BAM S1_L007_R1 unaligned CPTAC3 aaa8871f-2fa2-4714-99d0-b178d22d76e5 c3c28fd11b9a5793197afcd8b20a767e {"aliquot_tag": "ALQ_b617215c", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04168.miRNA-Seq.S38_L006_R1.A C3N-04168 LUAD miRNA-Seq tissue_normal CPT0255870009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCATTC_S38_L006_R1_001.unaln.bam 135414560 BAM S38_L006_R1 unaligned CPTAC3 8509098e-513f-49db-aebf-2024af1ba9e6 63533bba4c9d8986d0eabae78d811345 {"aliquot_tag": "ALQ_b46b051", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.miRNA-Seq.T.hg38 C3N-04168 LUAD miRNA-Seq tumor CPT0251530009 a66827c8-6062-448e-9d0f-4dc6b74342c3_mirnaseq_gdc_realn.bam 212858167 BAM harmonized CPTAC3 cea39111-6713-4a77-a6d8-2b8ef719ab9a aaacf98502e331df907b03e4b737dbf9 {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor"} -C3N-04168.RNA-Seq.chimeric.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.chimeric.gdc_realn.bam 26962421 BAM chimeric harmonized CPTAC3 6096df10-da21-4041-943a-de273e5dd5e0 e9809d8faf56278ee8cb5c18aa296ace {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.RNA-Seq.chimeric.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.chimeric.gdc_realn.bam 32373395 BAM chimeric harmonized CPTAC3 279dd400-eb01-4517-8be6-ed2686cc531c aee21ab685160026bc7861e0cd466766 {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor"} -C3N-04168.RNA-Seq.genomic.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.genomic.gdc_realn.bam 14196147836 BAM genomic harmonized CPTAC3 b0bb9f70-471a-4c2e-9d81-1b4b8fa3910f ab276efcad25ba31d359e7d9882b240d {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.RNA-Seq.genomic.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.genomic.gdc_realn.bam 8060226168 BAM genomic harmonized CPTAC3 4a3881c2-1512-4d9c-b990-628a1955ccf9 b58cd8313cb597a19def9a0c92bcb168 {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor"} -C3N-04168.RNA-Seq.S27_L007_R1.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R1_001.fastq.gz 3597156312 FASTQ S27_L007_R1 unaligned CPTAC3 5044e0aa-a4ab-48ef-8dd6-4b1ff5ddb63d 8cc54f782145ed591bce3fca520c40b9 {"aliquot_tag": "ALQ_b617215c", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04168.RNA-Seq.S27_L007_R2.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R2_001.fastq.gz 4026174764 FASTQ S27_L007_R2 unaligned CPTAC3 46dafde9-7d56-4a80-afa6-4f284eedeb8f 9d16535648b7d0f19eccfe081825fadc {"aliquot_tag": "ALQ_b617215c", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04168.RNA-Seq.S2_L001_R1.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 3998146335 FASTQ S2_L001_R1 unaligned CPTAC3 3bc28001-7c13-427c-9cb1-a67a8d22dcab af85fed4d1dd80f7f56d6f0598230fd2 {"aliquot_tag": "ALQ_b46b051", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.RNA-Seq.S2_L001_R2.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4639537646 FASTQ S2_L001_R2 unaligned CPTAC3 e61e8d4d-d2ba-4554-91a9-1cbb7ea9ee19 1a03c9869586670b8c973347debbf350 {"aliquot_tag": "ALQ_b46b051", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.RNA-Seq.transcriptome.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.transcriptome.gdc_realn.bam 7948045599 BAM transcriptome harmonized CPTAC3 75ffd267-89b9-45e1-8fef-8922ba5b2518 033a21a366e35f34d581508aa4eb50b3 {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.RNA-Seq.transcriptome.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.transcriptome.gdc_realn.bam 9253029936 BAM transcriptome harmonized CPTAC3 3815b424-9ade-48c6-b1b4-ede4fbf8db1c c206a41a1f3c16b604763efe6bf7eb1b {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor"} -C3N-04168.WGS.N C3N-04168 LUAD WGS blood_normal CPT0255960002 CPT0255960002.WholeGenome.RP-1303.bam 81801441893 BAM aligned CPTAC3 34d1eb6b-dfc6-4bfb-b4d5-aad2db8942b9 b938a26c528dd60f6c4cfb15591a938e {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04168.WGS.N.hg38 C3N-04168 LUAD WGS blood_normal CPT0255960002 0d3002e7-e715-44ac-9774-c07ee75d5d0a_wgs_gdc_realn.bam 120071170304 BAM harmonized CPTAC3 bb82aeb6-da15-4bec-9405-137957c2cc81 e56fca9c923baaeba0d942fe89dc0bad {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04168.WGS.T C3N-04168 LUAD WGS tumor CPT0251530006 CPT0251530006.WholeGenome.RP-1303.bam 66127822657 BAM aligned CPTAC3 f4cded34-8c70-4f65-b885-dacfb84c23a5 761b8972a33d3849e327659ff829a736 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor"} -C3N-04168.WGS.T.hg38 C3N-04168 LUAD WGS tumor CPT0251530006 3fcfbdc6-c537-4fc6-a54c-b0fdaae07128_wgs_gdc_realn.bam 98024091726 BAM harmonized CPTAC3 bb8490da-a68f-4adf-9bf4-d81488529100 1f6306e2aae3d0e88d9dde1a73c27e30 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor"} -C3N-04168.WXS.A C3N-04168 LUAD WXS tissue_normal CPT0255870006 CPT0255870006.WholeExome.RP-1303.bam 19749476783 BAM aligned CPTAC3 7f1a9437-bde4-4a45-9211-d495f38379d6 d90b4f371bb66c5b95ab54a0cfd6387e {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.WXS.A.hg38 C3N-04168 LUAD WXS tissue_normal CPT0255870006 91b1895f-6e7e-49b7-a6d2-768ae051591d_wxs_gdc_realn.bam 28011600755 BAM harmonized CPTAC3 c655fe7f-a330-487d-b05d-06635f271814 80829ca26adcaa071101d9c44bdaf61b {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04168.WXS.N C3N-04168 LUAD WXS blood_normal CPT0255960002 CPT0255960002.WholeExome.RP-1303.bam 28278817844 BAM aligned CPTAC3 3a33fd2a-26fe-4238-a3ee-ef969b8a69d4 4abf698078c0016c4343d87cc26206e4 {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04168.WXS.N.hg38 C3N-04168 LUAD WXS blood_normal CPT0255960002 0d3002e7-e715-44ac-9774-c07ee75d5d0a_wxs_gdc_realn.bam 38441139529 BAM harmonized CPTAC3 c9ef3258-4a3c-4806-ba80-7b237e65fdec 1c88b1c8a5deff4a40c1789dddad70d1 {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04168.WXS.T C3N-04168 LUAD WXS tumor CPT0251530006 CPT0251530006.WholeExome.RP-1303.bam 22665689814 BAM aligned CPTAC3 b9a6979b-b17b-456d-afd0-43e62ec52ef5 e4198230bfd45cb2e5bc4ce4e023bd09 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor"} -C3N-04168.WXS.T.hg38 C3N-04168 LUAD WXS tumor CPT0251530006 3fcfbdc6-c537-4fc6-a54c-b0fdaae07128_wxs_gdc_realn.bam 30734548500 BAM harmonized CPTAC3 85be9462-6d7a-4e08-b339-3694a9b1144c f774947e89f7b3049fd69c55f2186ec1 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor"} -C3N-04169.MethArray.Green.A C3N-04169 LSCC Methylation_Array tissue_normal CPT0247300006 204372030011_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 639d94c2-1e0f-4a49-aa8a-dc374019f3a2 ecc827c24d7804413fbfda4ae22a5aec {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.MethArray.Green.T C3N-04169 LSCC Methylation_Array tumor CPT0247290006 204372030072_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1c2a6cef-2e50-4462-acf2-d2c6614ab102 bfccecb8fafed2a8a5481cae55ce2994 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor"} -C3N-04169.MethArray.Red.A C3N-04169 LSCC Methylation_Array tissue_normal CPT0247300006 204372030011_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 962edc15-dbfc-4667-bcfa-e5532c97c561 2d913e0cfa5528fcc01b6d63b13c02a8 {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.MethArray.Red.T C3N-04169 LSCC Methylation_Array tumor CPT0247290006 204372030072_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 95ca4fab-9bf8-427a-8030-7f807701bd26 54b8a838a7d8129290e5d91e1d0f1559 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor"} -C3N-04169.miRNA-Seq.A.hg38 C3N-04169 LSCC miRNA-Seq tissue_normal CPT0247300009 e90391c1-7cf0-4a2b-a09f-06f057ee520e_mirnaseq_gdc_realn.bam 316359797 BAM harmonized CPTAC3 248b19a7-04e8-4c40-ae09-52dc35d082b6 7a1deb74b731fcf11728d84ee7c1bd47 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.miRNA-Seq.S6_L008_R1.T C3N-04169 LSCC miRNA-Seq tumor CPT0247290009 200224_UNC31-K00269_0267_AHC722BBXY_GCCAAT_S6_L008_R1_001.unaln.bam 269880160 BAM S6_L008_R1 unaligned CPTAC3 62b32a9f-b600-4aee-a5c5-36f9e3ae9505 3835ce426a47f250fe83ea79023ec7f4 {"aliquot_tag": "ALQ_4ed83ce1", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04169.miRNA-Seq.S8_L001_R1.A C3N-04169 LSCC miRNA-Seq tissue_normal CPT0247300009 200325_UNC31-K00269_0272_AHHC2NBBXY_CACTCA_S8_L001_R1_001.unaln.bam 285562461 BAM S8_L001_R1 unaligned CPTAC3 43b74453-a2da-49c8-a27d-e49397ddb657 70ba91723dcdb15ab64f975aff5a24b1 {"aliquot_tag": "ALQ_88948d35", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.miRNA-Seq.T.hg38 C3N-04169 LSCC miRNA-Seq tumor CPT0247290009 f4fd6ccc-2285-40e9-b747-89fb171fd276_mirnaseq_gdc_realn.bam 304470695 BAM harmonized CPTAC3 03c02385-3090-405c-a365-71122d03a7f0 bc6c738c29d339d476d078169dbb56a5 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor"} -C3N-04169.RNA-Seq.chimeric.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.chimeric.gdc_realn.bam 122244915 BAM chimeric harmonized CPTAC3 bca20687-b0a6-456e-9214-498ca9b548e4 df585c23c6b3eeeee9002eb29c208c52 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.RNA-Seq.chimeric.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.chimeric.gdc_realn.bam 31540082 BAM chimeric harmonized CPTAC3 5b8624ff-3786-4570-ba9e-364509cd7f85 fc6ad8788b7046df91d82d8760b92867 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor"} -C3N-04169.RNA-Seq.genomic.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.genomic.gdc_realn.bam 8645510934 BAM genomic harmonized CPTAC3 ec3dcde0-f159-4484-9c63-022b40cc8282 ec7787541aa83aad058718a8c5913113 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.RNA-Seq.genomic.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.genomic.gdc_realn.bam 7375827388 BAM genomic harmonized CPTAC3 e510a21f-b2c4-476f-9e64-b3db08beff9b deddd65e4c48fae4d93bb4fba7593240 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor"} -C3N-04169.RNA-Seq.S16_L004_R1.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R1_001.fastq.gz 4472375634 FASTQ S16_L004_R1 unaligned CPTAC3 f863296d-78d7-438d-8bb2-300c515dda44 271cf5fe0aab959a36831d604620ba3c {"aliquot_tag": "ALQ_88948d35", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.RNA-Seq.S16_L004_R2.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R2_001.fastq.gz 4663229052 FASTQ S16_L004_R2 unaligned CPTAC3 b12930f4-cac7-4a0d-a0b8-5e76154adf3f 7bbe8b68b272eac50aca5caa701d9055 {"aliquot_tag": "ALQ_88948d35", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.RNA-Seq.S6_L002_R1.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R1_001.fastq.gz 3690580584 FASTQ S6_L002_R1 unaligned CPTAC3 97479f3b-6532-460a-a0ab-10b872618b99 56f7a0572544ba1d5ebeb5a3485df335 {"aliquot_tag": "ALQ_4ed83ce1", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04169.RNA-Seq.S6_L002_R2.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R2_001.fastq.gz 3928710079 FASTQ S6_L002_R2 unaligned CPTAC3 0dd2c9f0-e996-43d9-bf63-520d9935099d 36cbaf7a3223820833f4e166f3c04c6f {"aliquot_tag": "ALQ_4ed83ce1", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04169.RNA-Seq.transcriptome.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.transcriptome.gdc_realn.bam 11040351546 BAM transcriptome harmonized CPTAC3 f67143b3-f9cf-4f26-a64e-292d83efa32f 8d1c4beae589137346c1818b9da22c82 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.RNA-Seq.transcriptome.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.transcriptome.gdc_realn.bam 11046710189 BAM transcriptome harmonized CPTAC3 d5a33594-91b5-4722-b655-217c08a43545 0cc14a8804b4890e96247b5503ba79a4 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor"} -C3N-04169.WGS.N C3N-04169 LSCC WGS blood_normal CPT0247330002 CPT0247330002.WholeGenome.RP-2158.bam 24715128796 BAM aligned CPTAC3 7667bb36-7936-45d5-a1c7-7e8ec9e84a15 ad2e7db42e775726e0d41a322e9e2c88 {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04169.WGS.N.hg38 C3N-04169 LSCC WGS blood_normal CPT0247330002 54e2e9f0-9524-4e55-9d51-57a4fb7cce60_wgs_gdc_realn.bam 73463581136 BAM harmonized CPTAC3 d3718f3b-2fda-4bdc-a5ad-37575d052825 44aa69a30fe82723b48e2778fb8312ba {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04169.WGS.T C3N-04169 LSCC WGS tumor CPT0247290006 CPT0247290006.WholeGenome.RP-2158.bam 22090184946 BAM aligned CPTAC3 2eaa7890-61af-4285-9981-816aa9a78e64 264043421f9de8bbea648404bcb7fdbe {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor"} -C3N-04169.WGS.T.hg38 C3N-04169 LSCC WGS tumor CPT0247290006 a23139fb-5134-4078-b6dc-1bda1c7f8bd9_wgs_gdc_realn.bam 63075312406 BAM harmonized CPTAC3 0804e70b-bb9b-43d8-ab44-1205ebbde973 901ad506e63961e00620627573beec0a {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor"} -C3N-04169.WXS.A C3N-04169 LSCC WXS tissue_normal CPT0247300006 CPT0247300006.WholeExome.RP-1303.bam 26976082013 BAM aligned CPTAC3 e99c9ddf-805a-4b50-b9dc-6819e8e9a8fd 64fb3fc2a3cf8c3263a7d758df167fd9 {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.WXS.A.hg38 C3N-04169 LSCC WXS tissue_normal CPT0247300006 87322779-d155-4258-a548-0440eda818e4_wxs_gdc_realn.bam 36448575089 BAM harmonized CPTAC3 38bce5b8-716c-4c09-8109-40211a17a0e8 bc601b3fea6fc34f7d01e5eb4462dd87 {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04169.WXS.N C3N-04169 LSCC WXS blood_normal CPT0247330002 CPT0247330002.WholeExome.RP-1303.bam 21686577140 BAM aligned CPTAC3 4f88eda3-9908-46c7-a77b-5472710d9c17 d905d4a4f17fa91ef0aac8194c33bf29 {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04169.WXS.N.hg38 C3N-04169 LSCC WXS blood_normal CPT0247330002 54e2e9f0-9524-4e55-9d51-57a4fb7cce60_wxs_gdc_realn.bam 30051189120 BAM harmonized CPTAC3 bbf10540-bcde-48f7-8473-03faa4f7da36 b81787885197447e15bf513ecde84bc4 {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04169.WXS.T C3N-04169 LSCC WXS tumor CPT0247290006 CPT0247290006.WholeExome.RP-1303.bam 36600511424 BAM aligned CPTAC3 2a3be69f-f8bf-46aa-86b0-f786b68d48c7 509fa7959b2a728c95519474535a6c92 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor"} -C3N-04169.WXS.T.hg38 C3N-04169 LSCC WXS tumor CPT0247290006 a23139fb-5134-4078-b6dc-1bda1c7f8bd9_wxs_gdc_realn.bam 51216657352 BAM harmonized CPTAC3 44b06874-20e8-4823-aef9-2636b40250f9 6bc7898e436e30d9bc72761bfc629125 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor"} -C3N-04173.MethArray.Green.A C3N-04173 LUAD Methylation_Array tissue_normal CPT0246090006 203561620132_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 92630ab6-eb8f-40bf-b81c-cff5aafd92f4 974a082653501d57a31fa5140c75d82c {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.MethArray.Green.T C3N-04173 LUAD Methylation_Array tumor CPT0246080006 203561620053_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 030aace5-4fac-48ea-9279-6e0d08e8ac19 9c00b6d1f43b4607fc2e0ea1e0358339 {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor"} -C3N-04173.MethArray.Red.A C3N-04173 LUAD Methylation_Array tissue_normal CPT0246090006 203561620132_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 499cc254-3b17-45db-80d9-f7b35ed420ab d24a63606a41a198bb42060a52b963b5 {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.MethArray.Red.T C3N-04173 LUAD Methylation_Array tumor CPT0246080006 203561620053_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 e2a9a039-e479-4fd3-acd9-d591022fccd3 e964053a13d6560908262da9eb16cf3e {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor"} -C3N-04173.miRNA-Seq.A.hg38 C3N-04173 LUAD miRNA-Seq tissue_normal CPT0246090009 24c7d702-a27f-4c1e-8f92-7ecde2495b41_mirnaseq_gdc_realn.bam 309336299 BAM harmonized CPTAC3 47fe5afe-5781-4733-babb-dd4c8883166f 14ed4f63b6e02e38ff225177f6b61e29 {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.miRNA-Seq.S143_L007_R1.A C3N-04173 LUAD miRNA-Seq tissue_normal CPT0246090009 190828_UNC32-K00270_0200_BH7GVJBBXY_GTTTCG_S143_L007_R1_001.unaln.bam 277996274 BAM S143_L007_R1 unaligned CPTAC3 05109bb7-575b-4e76-a342-5bd3b9016af4 1fe9c2d24f3d3c89c748ddf143d4c2f2 {"aliquot_tag": "ALQ_a567965e", "sample": "S143", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.miRNA-Seq.S48_L004_R1.T C3N-04173 LUAD miRNA-Seq tumor CPT0246080009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCCCGA_S48_L004_R1_001.unaln.bam 203996060 BAM S48_L004_R1 unaligned CPTAC3 fb2df4c3-43c2-4ee7-9817-ff2eec7697c8 15c81888efbe221bc00cbd1e73c5afb5 {"aliquot_tag": "ALQ_9807bfee", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04173.miRNA-Seq.T.hg38 C3N-04173 LUAD miRNA-Seq tumor CPT0246080009 d418909a-5fac-464e-a6cd-a5a36a407fc5_mirnaseq_gdc_realn.bam 224627793 BAM harmonized CPTAC3 8a06e741-83b6-45c6-828b-3d23cd764674 3ddfc571720aeb933debe37d4f5ced3d {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor"} -C3N-04173.RNA-Seq.chimeric.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.chimeric.gdc_realn.bam 41931808 BAM chimeric harmonized CPTAC3 c52f739a-5783-48f7-9666-ec1044a5dc0f 96ad60cc64bc2ddebf9bdef3a748bfbb {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.RNA-Seq.chimeric.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.chimeric.gdc_realn.bam 18943551 BAM chimeric harmonized CPTAC3 7ef79980-0143-4894-a099-a4528f60491a 955a686bb5678cef833c3c4675918d56 {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor"} -C3N-04173.RNA-Seq.genomic.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.genomic.gdc_realn.bam 10000547612 BAM genomic harmonized CPTAC3 a01db665-d90b-449d-94e3-1feaf0a834ca 85109c19e82605e1f1392b35bd6cee5b {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.RNA-Seq.genomic.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.genomic.gdc_realn.bam 11488546265 BAM genomic harmonized CPTAC3 4440b71e-5ec6-4c4e-aa6a-13304fff7ae1 65ad2f5259ca342110242c114365d46f {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor"} -C3N-04173.RNA-Seq.S12_L003_R1.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R1_001.fastq.gz 3120659218 FASTQ S12_L003_R1 unaligned CPTAC3 1d86a491-47f9-4d87-96a6-7b455f441fa5 c6a5ebe729c338edb170d8b8c541c715 {"aliquot_tag": "ALQ_9807bfee", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04173.RNA-Seq.S12_L003_R2.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R2_001.fastq.gz 3527276567 FASTQ S12_L003_R2 unaligned CPTAC3 4c01e88d-7212-4c8b-8724-4cc97209c184 becbb54929424ee36e3e34caafcd98ba {"aliquot_tag": "ALQ_9807bfee", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04173.RNA-Seq.S2_L001_R1.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R1_001.fastq.gz 3749168083 FASTQ S2_L001_R1 unaligned CPTAC3 f644207c-d22d-4d40-863f-5c827de3a073 7dacf279e4bf9be314ba09533b82dbea {"aliquot_tag": "ALQ_a567965e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.RNA-Seq.S2_L001_R2.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R2_001.fastq.gz 4467000810 FASTQ S2_L001_R2 unaligned CPTAC3 8ad61b6a-e091-4134-b3d0-ab5843c5bd04 a3877923bdf446cda12526773f13878e {"aliquot_tag": "ALQ_a567965e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.RNA-Seq.transcriptome.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.transcriptome.gdc_realn.bam 9196387903 BAM transcriptome harmonized CPTAC3 6a7adb32-b4ef-4969-b6f7-a9b225576e4c 5037106d3f708dd5121da81a10e0a292 {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.RNA-Seq.transcriptome.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.transcriptome.gdc_realn.bam 8348042887 BAM transcriptome harmonized CPTAC3 925f55c3-00d1-429a-a41f-129b68f80f3c a71b9161e6d20100c55afdf882605ff3 {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor"} -C3N-04173.WGS.N C3N-04173 LUAD WGS blood_normal CPT0246120002 CPT0246120002.WholeGenome.RP-1303.bam 75179611230 BAM aligned CPTAC3 c856049e-22e9-48f1-a62c-3ea21743b1b1 40aeb5b4e1600cf18289163d6e59ccbc {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04173.WGS.N.hg38 C3N-04173 LUAD WGS blood_normal CPT0246120002 298cc0c8-3f3f-4aa4-8e65-1ea7069ce7e9_wgs_gdc_realn.bam 110496917927 BAM harmonized CPTAC3 3ad93279-c460-4e39-8791-0e83339a9121 55283e8bab647b51af71ddd4b7832cdd {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04173.WGS.T C3N-04173 LUAD WGS tumor CPT0246080006 CPT0246080006.WholeGenome.RP-1303.bam 75419405100 BAM aligned CPTAC3 50ca4688-b5f5-420f-9e1d-233a43522022 327a90fc13c9000a7f950a5f22b87ce3 {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor"} -C3N-04173.WGS.T.hg38 C3N-04173 LUAD WGS tumor CPT0246080006 69ebc122-a499-4542-be3d-a8dda6e7f08a_wgs_gdc_realn.bam 109887095318 BAM harmonized CPTAC3 5b0d16d0-934f-45f3-8d11-1b8f4ac1e6bb 3592884a5f60da3050fdf50d7ab8f11c {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor"} -C3N-04173.WXS.A C3N-04173 LUAD WXS tissue_normal CPT0246090006 CPT0246090006.WholeExome.RP-1303.bam 23493662925 BAM aligned CPTAC3 f7e5941b-6205-4913-8c37-1a891aa0dcac c1cc81c33eec97c308166cf0fb464532 {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.WXS.A.hg38 C3N-04173 LUAD WXS tissue_normal CPT0246090006 6daf3540-271c-4875-a8d4-8900fe14a212_wxs_gdc_realn.bam 33381433024 BAM harmonized CPTAC3 2984add8-a6fe-45ef-8210-d23d76b0ffd7 5bacaf159eb3b839369fa0ed85be7038 {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04173.WXS.N C3N-04173 LUAD WXS blood_normal CPT0246120002 CPT0246120002.WholeExome.RP-1303.bam 29616006913 BAM aligned CPTAC3 b1cc7d71-851f-4418-a051-04500b0cd157 24e59d6aa10dc124897925bd23b6be48 {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04173.WXS.N.hg38 C3N-04173 LUAD WXS blood_normal CPT0246120002 298cc0c8-3f3f-4aa4-8e65-1ea7069ce7e9_wxs_gdc_realn.bam 40471992034 BAM harmonized CPTAC3 8101f62f-fc6a-46f7-9827-579557d45213 e0662776cbac242602a90253db855198 {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal"} -C3N-04173.WXS.T C3N-04173 LUAD WXS tumor CPT0246080006 CPT0246080006.WholeExome.RP-1303.bam 26268051835 BAM aligned CPTAC3 0bce8be0-24cf-4e33-84a2-03d1072e41c1 4fd38c6f33ffb4879309954d6f547c9c {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor"} -C3N-04173.WXS.T.hg38 C3N-04173 LUAD WXS tumor CPT0246080006 69ebc122-a499-4542-be3d-a8dda6e7f08a_wxs_gdc_realn.bam 35970097878 BAM harmonized CPTAC3 bd28b0c5-6029-455d-8c69-f9a8247bd648 e5b17eb9edb2f72c2eeb5d0b4b766f87 {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor"} -C3N-04176.MethArray.Green.T C3N-04176 LUAD Methylation_Array tumor CPT0247390006 203561620052_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b8ef0274-83c9-4ca2-983f-fce5a0a03df1 87aa590221f6d639e4b9bbda4f058a82 {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor"} -C3N-04176.MethArray.Red.T C3N-04176 LUAD Methylation_Array tumor CPT0247390006 203561620052_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 4db4c606-fac3-4f3f-8d56-441454b36f38 261f61db6a72150000170583b735b7fa {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor"} -C3N-04176.miRNA-Seq.A.hg38 C3N-04176 LUAD miRNA-Seq tissue_normal CPT0247400006 c9a7d572-6de8-4cca-875e-74a7340ddf74_mirnaseq_gdc_realn.bam 218949382 BAM harmonized CPTAC3 308f5c5c-da3d-48cf-a5b7-3052c0fbada2 5021a17ae16fa598d24a708d1d960b3a {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04176.miRNA-Seq.S36_L004_R1.T C3N-04176 LUAD miRNA-Seq tumor CPT0247390009 190722_UNC31-K00269_0234_AH7VGTBBXY_TACAGC_S36_L004_R1_001.unaln.bam 205775996 BAM S36_L004_R1 unaligned CPTAC3 f40bc171-02e5-4c82-8f10-22a8068866c3 acc0e70e408ca0ecc60426fc0926c8da {"aliquot_tag": "ALQ_8584ef44", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04176.miRNA-Seq.S4_L005_R1.A C3N-04176 LUAD miRNA-Seq tissue_normal CPT0247400006 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTTGA_S4_L005_R1_001.unaln.bam 191094801 BAM S4_L005_R1 unaligned CPTAC3 753157e4-da34-4cb6-9f60-b294c42d9d23 315d7d1bf0d91f3db54cf523e304993d {"aliquot_tag": "ALQ_52ea01c", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04176.miRNA-Seq.T.hg38 C3N-04176 LUAD miRNA-Seq tumor CPT0247390009 a922aa7c-f74b-4f49-a01c-cb7415264a2c_mirnaseq_gdc_realn.bam 227355761 BAM harmonized CPTAC3 3a3a0188-3691-4a35-aae9-9a04fc45549a 52e394cac6dc09020b6c2bb5f4e79a9b {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor"} -C3N-04176.RNA-Seq.chimeric.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.chimeric.gdc_realn.bam 39019042 BAM chimeric harmonized CPTAC3 4d91648e-0031-46ee-88c5-2ece72f9fbdf 76ab2a0757697dd4dd6028377b0036f3 {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04176.RNA-Seq.chimeric.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.chimeric.gdc_realn.bam 30826164 BAM chimeric harmonized CPTAC3 3c7f3d14-70e7-457e-8e1e-1da2c0f85894 a33ef0e721d86efd2d6312c34aea526f {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor"} -C3N-04176.RNA-Seq.genomic.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.genomic.gdc_realn.bam 17164577058 BAM genomic harmonized CPTAC3 0f3cb140-19c5-4591-b35f-c67aaf833944 c2f9c2556d46a89e56daf97d2c0d5e87 {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04176.RNA-Seq.genomic.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.genomic.gdc_realn.bam 13943763689 BAM genomic harmonized CPTAC3 296355d6-3ef8-412f-8954-a04e74ea33d9 a61fe86c06ae7584314ee1c5a491b528 {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor"} -C3N-04176.RNA-Seq.S13_L004_R1.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R1_001.fastq.gz 4430014065 FASTQ S13_L004_R1 unaligned CPTAC3 e6ff39a8-6d38-4ec9-a9e5-ff056ddc4fd2 62c92689c1545f444073cf9dfc969825 {"aliquot_tag": "ALQ_8584ef44", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04176.RNA-Seq.S13_L004_R2.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R2_001.fastq.gz 4975836044 FASTQ S13_L004_R2 unaligned CPTAC3 2d860b31-bf4a-4281-8d83-caa955b6c03b 187867ff8dae06feba67eb0889dd562e {"aliquot_tag": "ALQ_8584ef44", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04176.RNA-Seq.S20_L005_R1.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R1_001.fastq.gz 5543734528 FASTQ S20_L005_R1 unaligned CPTAC3 9009eb6a-1e4e-4655-a421-422064664c48 f3f029ed271f4be4755403316b688ecd {"aliquot_tag": "ALQ_52ea01c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04176.RNA-Seq.S20_L005_R2.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R2_001.fastq.gz 6230360073 FASTQ S20_L005_R2 unaligned CPTAC3 f8232df5-1cb0-44a3-972b-3466d16438f4 e1d3a74b3cba26e19979c9a176c77e08 {"aliquot_tag": "ALQ_52ea01c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04176.RNA-Seq.transcriptome.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.transcriptome.gdc_realn.bam 12373181591 BAM transcriptome harmonized CPTAC3 80ca4e7a-e74f-4db0-a534-14d431537aa9 6f36128d5654a39a988635f6de47f31f {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04176.RNA-Seq.transcriptome.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.transcriptome.gdc_realn.bam 10554142558 BAM transcriptome harmonized CPTAC3 1565f04a-d6ad-41e7-bf03-760a8413dbaa e8e40273de6df663083dab7b3fc97313 {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor"} -C3N-04176.WGS.N C3N-04176 LUAD WGS blood_normal CPT0247790002 CPT0247790002.WholeGenome.RP-1303.bam 70914497366 BAM aligned CPTAC3 c7311b42-94d5-45d4-91dc-ff272aa9a897 4c50213e9af7087e1c0331685a853bf6 {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal"} -C3N-04176.WGS.N.hg38 C3N-04176 LUAD WGS blood_normal CPT0247790002 960a6dc6-8f50-404f-ace3-e26c2c0218d1_wgs_gdc_realn.bam 105503865522 BAM harmonized CPTAC3 8738f461-b775-4a75-a555-003c1e83b643 8c83007762a9af9afb065a4764b8b71a {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal"} -C3N-04176.WGS.T C3N-04176 LUAD WGS tumor CPT0247390006 CPT0247390006.WholeGenome.RP-1303.bam 63557063063 BAM aligned CPTAC3 f1d13016-f7d1-4e45-a9d0-227b5586d52d 8091b2b6fa056990e99a03517650e985 {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor"} -C3N-04176.WGS.T.hg38 C3N-04176 LUAD WGS tumor CPT0247390006 eeb0c2ad-fe3d-4fb2-8eb6-431b21d3824d_wgs_gdc_realn.bam 92977768486 BAM harmonized CPTAC3 7b2957aa-065e-4816-9fe8-f74d014636d3 4f637f2efd272fdd689295ce017f54ec {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor"} -C3N-04176.WXS.N C3N-04176 LUAD WXS blood_normal CPT0247790002 CPT0247790002.WholeExome.RP-1303.bam 27503868261 BAM aligned CPTAC3 20d4f34b-7ac0-4900-af49-03d3c9ed7e5c 3fb41e41b2881726dbb7de54d9152ad9 {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal"} -C3N-04176.WXS.N.hg38 C3N-04176 LUAD WXS blood_normal CPT0247790002 960a6dc6-8f50-404f-ace3-e26c2c0218d1_wxs_gdc_realn.bam 37344100140 BAM harmonized CPTAC3 ed33f478-7371-444c-8674-90638c03d813 c557c0d8042a4c348409b34649c34ce3 {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal"} -C3N-04176.WXS.T C3N-04176 LUAD WXS tumor CPT0247390006 CPT0247390006.WholeExome.RP-1303.bam 24470262428 BAM aligned CPTAC3 d82908b1-19f2-463d-ab40-68334747f978 f9c6ad0e81b52d151a71768b93439d2b {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor"} -C3N-04176.WXS.T.hg38 C3N-04176 LUAD WXS tumor CPT0247390006 eeb0c2ad-fe3d-4fb2-8eb6-431b21d3824d_wxs_gdc_realn.bam 33718052779 BAM harmonized CPTAC3 06b89cd8-6a2c-4221-98df-49989219d8eb 06715897ed058051b1a2a15005ed7f38 {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor"} -C3N-04180.MethArray.Green.A C3N-04180 LUAD Methylation_Array tissue_normal CPT0247810006 203561450020_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1e5a395d-b36e-443d-bdeb-5134a9da2791 50848e25cbed7c13846f3e7f8d0a6278 {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.MethArray.Green.T C3N-04180 LUAD Methylation_Array tumor CPT0247800006 203561620162_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6f194238-8d8c-4815-8baf-b6d8e45dd7fd 5ac34dafc4a61cbec62bba14e1481117 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor"} -C3N-04180.MethArray.Red.A C3N-04180 LUAD Methylation_Array tissue_normal CPT0247810006 203561450020_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 71e17443-9099-4f61-9f32-e5d9ebaac077 b1c45bb0b25e5e75b3be3174b1e445f6 {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.MethArray.Red.T C3N-04180 LUAD Methylation_Array tumor CPT0247800006 203561620162_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 b252da56-4957-4eaf-bdfa-2b99f23502c5 74b660293d36f0c09a19b4f3a565e796 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor"} -C3N-04180.miRNA-Seq.A.hg38 C3N-04180 LUAD miRNA-Seq tissue_normal CPT0247810009 bf41ea70-1640-4704-9415-6231dc23bf25_mirnaseq_gdc_realn.bam 300303067 BAM harmonized CPTAC3 754bab63-e922-489b-bf84-f474f7e88bb3 be0bf227ab5a9f002e3eedba12922c24 {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.miRNA-Seq.S37_L004_R1.T C3N-04180 LUAD miRNA-Seq tumor CPT0247800009 190722_UNC31-K00269_0234_AH7VGTBBXY_TATAAT_S37_L004_R1_001.unaln.bam 197664837 BAM S37_L004_R1 unaligned CPTAC3 8a7b9926-84f8-4842-9764-d0f4b95b3756 505ee37ec798d31e161ee4c659d06036 {"aliquot_tag": "ALQ_e2537df6", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04180.miRNA-Seq.S42_L007_R1.A C3N-04180 LUAD miRNA-Seq tissue_normal CPT0247810009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGAAA_S42_L007_R1_001.unaln.bam 262139153 BAM S42_L007_R1 unaligned CPTAC3 630e7c2a-4ead-466c-aa6d-6127d7dbc092 dee0155f978b6ec9202f2275df8937d1 {"aliquot_tag": "ALQ_df335446", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.miRNA-Seq.T.hg38 C3N-04180 LUAD miRNA-Seq tumor CPT0247800009 966e5511-bfd2-47ba-8639-298f759905f2_mirnaseq_gdc_realn.bam 219837464 BAM harmonized CPTAC3 3f9e3821-7a68-46e3-9a1b-46f178d96697 bc2a413ff7a8c26e59d384cffd591ddc {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor"} -C3N-04180.RNA-Seq.chimeric.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.chimeric.gdc_realn.bam 34723369 BAM chimeric harmonized CPTAC3 93c1ecc2-3afc-43c1-a125-4289e894e858 9d7aada4f823a0ba8e0cfc881ad87aad {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.RNA-Seq.chimeric.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.chimeric.gdc_realn.bam 27066093 BAM chimeric harmonized CPTAC3 add3c2c4-cb1a-4b6a-b158-12070a90e86a 74973575786328a868b09a980496b69c {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor"} -C3N-04180.RNA-Seq.genomic.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.genomic.gdc_realn.bam 8358142306 BAM genomic harmonized CPTAC3 b74c1fb8-caa7-4699-8e8a-f75ccf4751f4 f90ccc6bde9bc7dc12e3a1662ffb11ce {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.RNA-Seq.genomic.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.genomic.gdc_realn.bam 12127235623 BAM genomic harmonized CPTAC3 fde35541-b3cb-4e9c-bbdc-a289ee0500f3 6e23351b46f52e1d89992653c1b92a19 {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor"} -C3N-04180.RNA-Seq.S16_L004_R1.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R1_001.fastq.gz 3688431524 FASTQ S16_L004_R1 unaligned CPTAC3 079aa97e-3ca0-4252-a5c2-dc08802378f6 b6629f6bdd3c5d57dc0e711494dc06e9 {"aliquot_tag": "ALQ_e2537df6", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04180.RNA-Seq.S16_L004_R2.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R2_001.fastq.gz 4310951410 FASTQ S16_L004_R2 unaligned CPTAC3 cb9c2592-b706-4c4f-a395-3c5eefbab73a 26e1e9ed8ad95e1c47c9468f746c9b4a {"aliquot_tag": "ALQ_e2537df6", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04180.RNA-Seq.S7_L002_R1.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R1_001.fastq.gz 3210841174 FASTQ S7_L002_R1 unaligned CPTAC3 c76d540f-e83e-4512-bbb3-88a52442ee0e f8187ac834865b29a4283c30c6fe67f5 {"aliquot_tag": "ALQ_df335446", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.RNA-Seq.S7_L002_R2.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R2_001.fastq.gz 3689260719 FASTQ S7_L002_R2 unaligned CPTAC3 f8858c65-c35d-420a-a449-4354faa801a5 c99eca9275182382b679e8dd55973fb0 {"aliquot_tag": "ALQ_df335446", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.RNA-Seq.transcriptome.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.transcriptome.gdc_realn.bam 7719051864 BAM transcriptome harmonized CPTAC3 fa113753-ba3c-4ee6-bda4-b136732a6a74 fdd0eb71fc5f9972ccce1bd28206bce0 {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.RNA-Seq.transcriptome.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.transcriptome.gdc_realn.bam 10656251697 BAM transcriptome harmonized CPTAC3 428c8369-3f90-4bf3-b7a7-9e49e6a62130 7a15171a975af2c8e7314f47ac469f98 {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor"} -C3N-04180.WGS.N C3N-04180 LUAD WGS blood_normal CPT0247840002 CPT0247840002.WholeGenome.RP-1303.bam 72897946606 BAM aligned CPTAC3 7da2864d-4f96-47c7-939a-25b582df183f bc70c909f87457c4c6aceb0fdfd4a8d3 {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal"} -C3N-04180.WGS.N.hg38 C3N-04180 LUAD WGS blood_normal CPT0247840002 c1986a60-76f3-47a3-959e-a5e616741443_wgs_gdc_realn.bam 105901682399 BAM harmonized CPTAC3 02584fea-efe1-4648-8e01-7f337a32c2d6 e9ededfb019fc399cacaf871fb6c563d {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal"} -C3N-04180.WGS.T C3N-04180 LUAD WGS tumor CPT0247800006 CPT0247800006.WholeGenome.RP-1303.bam 58623111455 BAM aligned CPTAC3 46dca979-c9d5-41cf-be09-d7a748a53735 9c1f056b10b098f200aa8d108ce70f59 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor"} -C3N-04180.WGS.T.hg38 C3N-04180 LUAD WGS tumor CPT0247800006 6dfb784a-7d1c-40af-8cb2-19c005b7274e_wgs_gdc_realn.bam 84928089015 BAM harmonized CPTAC3 7b05050d-3b38-4aee-9065-eb355491b6ca fa97c602a9e52ca7a167b0918dbfbb2b {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor"} -C3N-04180.WXS.A C3N-04180 LUAD WXS tissue_normal CPT0247810006 CPT0247810006.WholeExome.RP-1303.bam 25621934114 BAM aligned CPTAC3 a99f79c1-a0a3-48fe-b58a-a3a0ed4c501e 0dff3c320a831609eaae8fb9a65747f3 {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.WXS.A.hg38 C3N-04180 LUAD WXS tissue_normal CPT0247810006 0db3fedf-3ff3-42ca-970d-36fb9942490d_wxs_gdc_realn.bam 35987940235 BAM harmonized CPTAC3 b4e16a0c-46f5-4d87-8551-363cf3f9f55a 91e85e8e00db451bfcb15029149a4e0b {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04180.WXS.N C3N-04180 LUAD WXS blood_normal CPT0247840002 CPT0247840002.WholeExome.RP-1303.bam 27191859557 BAM aligned CPTAC3 fe0b7607-cfbb-40f1-9bdb-3d5017d26bbc 68fc2b1b8f49de7321d6f1bda09df52c {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal"} -C3N-04180.WXS.N.hg38 C3N-04180 LUAD WXS blood_normal CPT0247840002 c1986a60-76f3-47a3-959e-a5e616741443_wxs_gdc_realn.bam 37504073014 BAM harmonized CPTAC3 f4033489-bfd0-4e49-bc9f-7adb5a397614 e480b210d782aa4378ba9ce23d80d09a {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal"} -C3N-04180.WXS.T C3N-04180 LUAD WXS tumor CPT0247800006 CPT0247800006.WholeExome.RP-1303.bam 24828863994 BAM aligned CPTAC3 3399fc25-1c72-4283-884b-80c9e5edbb9d ece98d30e445a525926e56c5b9168cbb {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor"} -C3N-04180.WXS.T.hg38 C3N-04180 LUAD WXS tumor CPT0247800006 6dfb784a-7d1c-40af-8cb2-19c005b7274e_wxs_gdc_realn.bam 34633764426 BAM harmonized CPTAC3 db6c0e60-b997-4ebe-b250-7430a61dc275 4f1db11ee2f2c249f9643114ef4ca707 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor"} -C3N-04273.MethArray.Green.T C3N-04273 HNSCC Methylation_Array tumor CPT0245230010 203271740156_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0af0ce79-7155-47d5-9a5d-53f0a728fb37 a5c9ae770a262e02d45b72d4e942a7c2 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor"} -C3N-04273.MethArray.Red.T C3N-04273 HNSCC Methylation_Array tumor CPT0245230010 203271740156_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 b06d8772-5432-4f4f-a65a-adc799b00783 4f6ad7b3afe7d3e030990d561ffffe95 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor"} -C3N-04273.miRNA-Seq.S22_L006_R1.T C3N-04273 HNSCC miRNA-Seq tumor CPT0245230007 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L006_R1_001.unaln.bam 217298749 BAM S22_L006_R1 unaligned CPTAC3 4ca9688f-dac7-41a7-9aa7-1479008e1668 41ea18c5647e675bb1720441003e42c4 {"aliquot_tag": "ALQ_744f186e", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04273.miRNA-Seq.T.hg38 C3N-04273 HNSCC miRNA-Seq tumor CPT0245230007 ffc63a82-f0bb-4ea4-87ed-078abb7f673c_mirnaseq_gdc_realn.bam 247110656 BAM harmonized CPTAC3 ecdc0c13-801c-4dec-a9db-06373376f611 578791f2194c0179dcce90b0a73c8752 {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor"} -C3N-04273.RNA-Seq.chimeric.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.chimeric.gdc_realn.bam 35816179 BAM chimeric harmonized CPTAC3 80dcf74b-4e0b-4e80-80f5-90439e6067cd 6755b454dc92180fa40f1e6cb83e5f82 {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor"} -C3N-04273.RNA-Seq.genomic.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.genomic.gdc_realn.bam 7672545062 BAM genomic harmonized CPTAC3 966e623a-880d-4cf3-a8a1-822e9f70b051 7eca67d272a74c67906e10694267a9bd {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor"} -C3N-04273.RNA-Seq.S35_L008_R1.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R1_001.fastq.gz 3540715562 FASTQ S35_L008_R1 unaligned CPTAC3 efe2a881-2ece-4dad-8c4a-593a18039330 dd3008e2862adde61773c19baff1c5e5 {"aliquot_tag": "ALQ_744f186e", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04273.RNA-Seq.S35_L008_R2.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R2_001.fastq.gz 4041339544 FASTQ S35_L008_R2 unaligned CPTAC3 7894fce1-8f49-40bd-a1be-8245cd4eea40 d01c5d9a788825e284111a5786a4220a {"aliquot_tag": "ALQ_744f186e", "sample": "S35", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04273.RNA-Seq.transcriptome.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.transcriptome.gdc_realn.bam 8649353055 BAM transcriptome harmonized CPTAC3 b3c0cd57-58c0-4fe6-a422-9c2e6773e0e2 3232c80a1df56c2ccd6bdf4fe892113e {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor"} -C3N-04273.WGS.N C3N-04273 HNSCC WGS blood_normal CPT0245290002 CPT0245290002.WholeGenome.RP-1303.bam 78492721832 BAM aligned CPTAC3 28b5661b-a20f-4897-beb4-68bc631be9a8 b42f739ee7f2c282279fb6b5f8546d51 {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal"} -C3N-04273.WGS.N.hg38 C3N-04273 HNSCC WGS blood_normal CPT0245290002 431aadcb-c498-4e4a-8684-1e78ad4edfc8_wgs_gdc_realn.bam 112427816978 BAM harmonized CPTAC3 b5d8733d-85e6-41cf-8bcb-45b0cc18b693 1c0707b57031e7584f0f8c000c24ab67 {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal"} -C3N-04273.WGS.T C3N-04273 HNSCC WGS tumor CPT0245230010 CPT0245230010.WholeGenome.RP-1303.bam 64442247798 BAM aligned CPTAC3 b2f84179-526f-4e6a-9110-7b6dba66bb40 862a28fab860b22c613b918a62fa5ac2 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor"} -C3N-04273.WGS.T.hg38 C3N-04273 HNSCC WGS tumor CPT0245230010 baebe3ef-dedd-4185-8107-9105500fa99b_wgs_gdc_realn.bam 92834993929 BAM harmonized CPTAC3 f685fabc-3497-4689-8ddf-10dce16ce9e9 b3b4ed817a0c7e8166dc54bc16450057 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor"} -C3N-04273.WXS.N C3N-04273 HNSCC WXS blood_normal CPT0245290002 CPT0245290002.WholeExome.RP-1303.bam 45005222461 BAM aligned CPTAC3 53b3d4d8-d66a-42f5-a16b-f24b4ce53125 49b5cf03411f489293d6b6c7368a3315 {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal"} -C3N-04273.WXS.N.hg38 C3N-04273 HNSCC WXS blood_normal CPT0245290002 431aadcb-c498-4e4a-8684-1e78ad4edfc8_wxs_gdc_realn.bam 61797189667 BAM harmonized CPTAC3 b805f18c-cd4b-45e7-8906-ff4b6892101b 98de45820581165a5b2cf297ac192dbb {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal"} -C3N-04273.WXS.T C3N-04273 HNSCC WXS tumor CPT0245230010 CPT0245230010.WholeExome.RP-1303.bam 17700660406 BAM aligned CPTAC3 8b8fb884-c4b4-4b0e-b244-fd89014c4229 3a3b09454ed87e3ecab25a50e8f961f2 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor"} -C3N-04273.WXS.T.hg38 C3N-04273 HNSCC WXS tumor CPT0245230010 baebe3ef-dedd-4185-8107-9105500fa99b_wxs_gdc_realn.bam 25617241109 BAM harmonized CPTAC3 1a23cd74-d4f9-41a3-8441-1680d1ec3705 a5509d44cca7e260eeb9aaa1fdcf6f35 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor"} -C3N-04275.MethArray.Green.T C3N-04275 HNSCC Methylation_Array tumor CPT0245300006 203271740101_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f84a9b78-6142-44c7-b181-d80485568105 2d49c22f40774d24cfe29635d86ff0ff {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor"} -C3N-04275.MethArray.Red.T C3N-04275 HNSCC Methylation_Array tumor CPT0245300006 203271740101_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 45deee1e-c0a8-4357-83e1-f20d1149c90c e4dde9515954f12c4564310d9b9297a4 {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor"} -C3N-04275.miRNA-Seq.S40_L004_R1.T C3N-04275 HNSCC miRNA-Seq tumor CPT0245300009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTCAGA_S40_L004_R1_001.unaln.bam 224241674 BAM S40_L004_R1 unaligned CPTAC3 7db78c63-06dd-473a-b4b4-85ac3830ceab 7cb4545822183f81e254995eae599537 {"aliquot_tag": "ALQ_1f0b9c1c", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04275.miRNA-Seq.T.hg38 C3N-04275 HNSCC miRNA-Seq tumor CPT0245300009 8d82c1f9-5395-49c3-a71e-2524f9843a69_mirnaseq_gdc_realn.bam 249970448 BAM harmonized CPTAC3 e4892bdf-6697-484e-9f80-a221c94f1ec5 18beefa2bf3b717a96ec5439d6df1dd3 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor"} -C3N-04275.RNA-Seq.chimeric.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.chimeric.gdc_realn.bam 136059173 BAM chimeric harmonized CPTAC3 078eab4b-de93-47a9-8d65-28a91e30f05a 821bf57b7fefa7734f1999ae425e6ee9 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor"} -C3N-04275.RNA-Seq.genomic.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.genomic.gdc_realn.bam 9738467964 BAM genomic harmonized CPTAC3 16f4b7a1-00fa-4089-8bff-922f32c6cce2 5e8dcfaf39e771e9bd54a9816f478d27 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor"} -C3N-04275.RNA-Seq.S2_L001_R1.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R1_001.fastq.gz 4699080068 FASTQ S2_L001_R1 unaligned CPTAC3 b85da967-79cd-45d7-87ba-33b89769eccb f72accf6229c40199e9476cd5c4f0102 {"aliquot_tag": "ALQ_1f0b9c1c", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04275.RNA-Seq.S2_L001_R2.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R2_001.fastq.gz 4633503877 FASTQ S2_L001_R2 unaligned CPTAC3 e00fecd0-b271-4618-91a9-35e85f2b8a66 24508f1233e069dd74c8224a02f6c8e4 {"aliquot_tag": "ALQ_1f0b9c1c", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04275.RNA-Seq.transcriptome.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.transcriptome.gdc_realn.bam 11156856445 BAM transcriptome harmonized CPTAC3 3fb6604e-ba69-48f6-92c6-3b8a7b74e566 3487535d811331809d9aa0741bea8ac4 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor"} -C3N-04275.WGS.N C3N-04275 HNSCC WGS blood_normal CPT0245340002 CPT0245340002.WholeGenome.RP-1303.bam 72376442414 BAM aligned CPTAC3 5dfa26fa-9e3a-4d58-b97e-5e09231ae4c9 ab93f198bcdc33384c4d2d7ca9a42c41 {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal"} -C3N-04275.WGS.N.hg38 C3N-04275 HNSCC WGS blood_normal CPT0245340002 599c5049-fd3c-4556-983a-f53a845dca2b_wgs_gdc_realn.bam 110480523844 BAM harmonized CPTAC3 99b26ff9-3e31-4920-9ea0-ccb2ab7cc9f4 b8fcf779efb2497d3b6e2d7ac3f8fb0f {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal"} -C3N-04275.WGS.T C3N-04275 HNSCC WGS tumor CPT0245300006 CPT0245300006.WholeGenome.RP-1303.bam 82810280909 BAM aligned CPTAC3 9925979b-1d7b-4165-9b22-6af2553c71d5 b18ce2089a7839096589b72d65296916 {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor"} -C3N-04275.WGS.T.hg38 C3N-04275 HNSCC WGS tumor CPT0245300006 b933d5a8-8f91-4e04-bc03-35154301efda_wgs_gdc_realn.bam 120997728581 BAM harmonized CPTAC3 2afc6cb8-9a49-4700-b0a9-be6b58d22e5e 655f8ce59219ee0692b21ae63410547d {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor"} -C3N-04275.WXS.N C3N-04275 HNSCC WXS blood_normal CPT0245340002 CPT0245340002.WholeExome.RP-1303.bam 21191741529 BAM aligned CPTAC3 6eb0e719-9c31-4258-8d22-703a1aaa6f46 d986bd44b35dd00ccd35cbdecb0d61a8 {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal"} -C3N-04275.WXS.N.hg38 C3N-04275 HNSCC WXS blood_normal CPT0245340002 599c5049-fd3c-4556-983a-f53a845dca2b_wxs_gdc_realn.bam 29761107273 BAM harmonized CPTAC3 27f52cd1-5d8b-441c-80ab-c6bf1629f770 a49a2093af5ad15f535c140529dff6c3 {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal"} -C3N-04275.WXS.T C3N-04275 HNSCC WXS tumor CPT0245300006 CPT0245300006.WholeExome.RP-1303.bam 25282246297 BAM aligned CPTAC3 990b5af7-48e8-4692-9f44-fe8db79181f7 bd5408078c7f221b9d79ea8e3d1d6f2a {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor"} -C3N-04275.WXS.T.hg38 C3N-04275 HNSCC WXS tumor CPT0245300006 b933d5a8-8f91-4e04-bc03-35154301efda_wxs_gdc_realn.bam 34623207019 BAM harmonized CPTAC3 2e8c0d56-24bb-4550-9c64-def877e2252e 058fda0288c0e2e7d2e45ce4d6f3c20a {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor"} -C3N-04276.MethArray.Green.T C3N-04276 HNSCC Methylation_Array tumor CPT0245350012 203271750010_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c460cbfe-99fc-4e91-aa7f-ecda0423fe06 bfca39a1969223ad2c65ab5c19a4451e {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor"} -C3N-04276.MethArray.Red.T C3N-04276 HNSCC Methylation_Array tumor CPT0245350012 203271750010_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 28169e8b-0ed9-4f07-8674-ad260b8427e4 c457c8ebd4b3a745f7a2b1083d3bf9d6 {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor"} -C3N-04276.miRNA-Seq.S41_L004_R1.T C3N-04276 HNSCC miRNA-Seq tumor CPT0245350009 190228_UNC32-K00270_0151_AHYLY3BBXX_GACGAC_S41_L004_R1_001.unaln.bam 250283338 BAM S41_L004_R1 unaligned CPTAC3 a243eb71-bdfe-4278-82f7-ecbe6fc11e63 9fd0244c8569c43a4ff7946692b4c7fd {"aliquot_tag": "ALQ_d7eb136c", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04276.miRNA-Seq.T.hg38 C3N-04276 HNSCC miRNA-Seq tumor CPT0245350009 170b159b-425f-4bd2-bfed-36d5b92686ca_mirnaseq_gdc_realn.bam 284325461 BAM harmonized CPTAC3 2206881f-1611-4e84-8dbc-37a183795a64 349feaa3958705be33e346d3fa83bf58 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor"} -C3N-04276.RNA-Seq.chimeric.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.chimeric.gdc_realn.bam 284551815 BAM chimeric harmonized CPTAC3 bcc6b27b-6dcf-4e80-bb94-a183600924e9 46e23bdc8114fd3bb6c9e8bff45b9bb1 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor"} -C3N-04276.RNA-Seq.genomic.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.genomic.gdc_realn.bam 9412975036 BAM genomic harmonized CPTAC3 84c1b73e-c79c-49db-a665-f22b4cec8bc1 1680fb177f6117e55fad1241c78860b7 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor"} -C3N-04276.RNA-Seq.S7_L002_R1.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R1_001.fastq.gz 4328601606 FASTQ S7_L002_R1 unaligned CPTAC3 d1323de1-30ee-4d4e-8ea3-14da93af8015 c5730f9c848e662568f5b36d2fcae493 {"aliquot_tag": "ALQ_d7eb136c", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04276.RNA-Seq.S7_L002_R2.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R2_001.fastq.gz 5031131849 FASTQ S7_L002_R2 unaligned CPTAC3 e323b48c-f22c-4f0c-8715-8647c21c71b1 f15bb0b0880cc1bbd973113c7659a0a8 {"aliquot_tag": "ALQ_d7eb136c", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04276.RNA-Seq.transcriptome.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.transcriptome.gdc_realn.bam 9059906864 BAM transcriptome harmonized CPTAC3 736ea983-14f2-4e29-b05b-634d07d39163 268f058087404b043d30bdd6718cdd33 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor"} -C3N-04276.WGS.N C3N-04276 HNSCC WGS blood_normal CPT0245390002 CPT0245390002.WholeGenome.RP-1303.bam 63259704019 BAM aligned CPTAC3 77503410-57ab-4c0f-8111-3a7e02b36a54 4130b9565901b00b5790d3ed0b8f32dd {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-04276.WGS.N.hg38 C3N-04276 HNSCC WGS blood_normal CPT0245390002 5b45e606-7f98-4778-9582-30f6b3c7de78_wgs_gdc_realn.bam 92038755481 BAM harmonized CPTAC3 f2302355-fdf5-430d-9751-2c6199089e99 00f92f3d8a3ea5a715dd6a9d1b8bf7eb {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-04276.WGS.T C3N-04276 HNSCC WGS tumor CPT0245350012 CPT0245350012.WholeGenome.RP-1303.bam 82324422916 BAM aligned CPTAC3 4553db4c-6e83-4460-8576-1cf37c2cce3d 28f5e8869c3495afc1ac10c781b214df {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor"} -C3N-04276.WGS.T.hg38 C3N-04276 HNSCC WGS tumor CPT0245350012 75ea61f6-0343-404f-8cd0-84730edc2893_wgs_gdc_realn.bam 118628954593 BAM harmonized CPTAC3 00d73176-dd01-43d5-9526-30b79268df51 8782299e3f939544f0bbeac7221dbe7c {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor"} -C3N-04276.WXS.N C3N-04276 HNSCC WXS blood_normal CPT0245390002 CPT0245390002.WholeExome.RP-1303.bam 33626322148 BAM aligned CPTAC3 7a6f6b87-93c6-4977-b05b-a0ecdd23b48b 30f9abc1f846db5921176a5afc669b61 {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-04276.WXS.N.hg38 C3N-04276 HNSCC WXS blood_normal CPT0245390002 5b45e606-7f98-4778-9582-30f6b3c7de78_wxs_gdc_realn.bam 46359510855 BAM harmonized CPTAC3 e2369007-57dc-4fec-a2ec-7d679ca60627 6cde713aaed11e8d683ff92bbcc2ecf8 {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal"} -C3N-04276.WXS.T C3N-04276 HNSCC WXS tumor CPT0245350012 CPT0245350012.WholeExome.RP-1303.bam 27454972830 BAM aligned CPTAC3 540cc6bb-0bf6-4751-8762-b7a34dd2c5c9 6f38efd62156da019d26a7e3cc900d9c {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor"} -C3N-04276.WXS.T.hg38 C3N-04276 HNSCC WXS tumor CPT0245350012 75ea61f6-0343-404f-8cd0-84730edc2893_wxs_gdc_realn.bam 37513730258 BAM harmonized CPTAC3 db552d29-91c6-44ec-90dc-9e19efb6e211 2ea8be51eb175261ca3c636e7d88af15 {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor"} -C3N-04277.MethArray.Green.T C3N-04277 HNSCC Methylation_Array tumor CPT0245400006 203271740119_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4f9bc0d5-70e6-43d1-b86c-179363b65d56 bcd43220fb52fc593413f16662bbbe83 {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor"} -C3N-04277.MethArray.Red.T C3N-04277 HNSCC Methylation_Array tumor CPT0245400006 203271740119_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 de2ab0e9-2037-4398-8651-10f7c9d2b54e 68558158715e5bf4a28ded1af1ac22ad {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor"} -C3N-04277.miRNA-Seq.A.hg38 C3N-04277 HNSCC miRNA-Seq tissue_normal CPT0245410006 15da5489-9175-47cd-ab24-3f7e49d7924a_mirnaseq_gdc_realn.bam 303527181 BAM harmonized CPTAC3 7c4bcb07-6fe5-4243-b693-d1c27b498480 950d90fc8f3fbadf33f3a8fb32605363 {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04277.miRNA-Seq.S23_L006_R1.T C3N-04277 HNSCC miRNA-Seq tumor CPT0245400009 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L006_R1_001.unaln.bam 167506981 BAM S23_L006_R1 unaligned CPTAC3 bd40db2d-a574-4543-b31f-2ca49144a0be 0597c5c78954aba1dafecfa187ca85f8 {"aliquot_tag": "ALQ_20eaca4", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04277.miRNA-Seq.S37_L006_R1.A C3N-04277 HNSCC miRNA-Seq tissue_normal CPT0245410006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGGAAT_S37_L006_R1_001.unaln.bam 267912842 BAM S37_L006_R1 unaligned CPTAC3 9e35448c-26d8-405b-b1ee-8e5db8321606 af16c9942cd00b993308331bd08469cf {"aliquot_tag": "ALQ_afd19885", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04277.miRNA-Seq.T.hg38 C3N-04277 HNSCC miRNA-Seq tumor CPT0245400009 51da119c-1747-4158-9242-e00a79cf80e9_mirnaseq_gdc_realn.bam 190140639 BAM harmonized CPTAC3 6d1c59ec-c889-4569-a98d-65ad3cdd8b9a 19c19257848fb113c6f206204508444f {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.chimeric.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.chimeric.gdc_realn.bam 28610641 BAM chimeric harmonized CPTAC3 8eb3c400-5e06-4bac-992d-e84b43f290dd 144a1dad813d38ea6771cf000c36edf4 {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04277.RNA-Seq.chimeric.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.chimeric.gdc_realn.bam 35549232 BAM chimeric harmonized CPTAC3 d69ef686-55f3-4674-9ece-3b8e58db45e4 b2b1659b4cbd8f9b607c9826495ec338 {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.chimeric.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.chimeric.gdc_realn.bam 189491325 BAM chimeric harmonized CPTAC3 2d728144-9ea0-49f4-a5fd-dfc08cd51723 84035eebc20654d9773cbd9ab533bf78 {"aliquot_tag": "ALQ_74897a95", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.genomic.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.genomic.gdc_realn.bam 8309447314 BAM genomic harmonized CPTAC3 b9114f83-525e-402b-ba2f-eabe551e7e5e f73fba62fe0978cdfe07748ed436de9c {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04277.RNA-Seq.genomic.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.genomic.gdc_realn.bam 9775788617 BAM genomic harmonized CPTAC3 6dcd26d9-d7cd-4b2a-9cc4-40f025791ab8 5540a5667610c307b440b03d777804dd {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.genomic.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.genomic.gdc_realn.bam 12064687960 BAM genomic harmonized CPTAC3 e236dff9-e4b9-4667-a473-9d373bf9063e a36971cabac47bae85c665328b4bce7f {"aliquot_tag": "ALQ_74897a95", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.S15_L004_R1.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R1_001.fastq.gz 3952174166 FASTQ S15_L004_R1 unaligned CPTAC3 fc30b03c-1648-4a7f-8e34-d327a5538c66 4f6f397f6170aafdef564a0d859db2bb {"aliquot_tag": "ALQ_afd19885", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04277.RNA-Seq.S15_L004_R2.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R2_001.fastq.gz 4610350558 FASTQ S15_L004_R2 unaligned CPTAC3 038c716a-d778-4625-9aa5-ac21960d828b 48f5c4e00f82120009c7e25c6454a5bc {"aliquot_tag": "ALQ_afd19885", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04277.RNA-Seq.S34_L008_R1.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R1_001.fastq.gz 4177180141 FASTQ S34_L008_R1 unaligned CPTAC3 fa35aaf1-1460-423c-b1d2-130e3f34dec7 7f359846189077740f1435fb0e4a1ba6 {"aliquot_tag": "ALQ_20eaca4", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.S34_L008_R2.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R2_001.fastq.gz 4758977709 FASTQ S34_L008_R2 unaligned CPTAC3 84b1689d-1d99-4461-9aef-400ef5fde5d1 6fa0a6a5b2ca3ff6a4f77964f4736b54 {"aliquot_tag": "ALQ_20eaca4", "sample": "S34", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.S36_R1.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R1_001.fastq.gz 7078273403 FASTQ S36_R1 unaligned CPTAC3 c27a6295-f422-4b05-9ff7-585de5f2503e b3c3dc6d9f91157878a0c9f35f1531ce {"aliquot_tag": "ALQ_74897a95", "sample": "S36", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.S36_R2.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R2_001.fastq.gz 7340442869 FASTQ S36_R2 unaligned CPTAC3 a409cfc6-525a-469f-8ba3-d81b2dee59cf cd2e1eb12e3e8a6ce28ff17ce77a2318 {"aliquot_tag": "ALQ_74897a95", "sample": "S36", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.transcriptome.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.transcriptome.gdc_realn.bam 12123400658 BAM transcriptome harmonized CPTAC3 74112966-e6bb-47f5-8101-c77e6af950e2 674b51d39bb808544e06477c9a294a8c {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04277.RNA-Seq.transcriptome.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.transcriptome.gdc_realn.bam 12146968352 BAM transcriptome harmonized CPTAC3 2a6dd467-441f-41de-b641-b5ed664a7d0e a970dfad805dced618acc1def65cd24d {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor"} -C3N-04277.RNA-Seq.transcriptome.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.transcriptome.gdc_realn.bam 6930648272 BAM transcriptome harmonized CPTAC3 a927cd11-b71f-4814-bbae-fa5326dac325 c822b41c22e991e44873a4bfbd77c834 {"aliquot_tag": "ALQ_74897a95", "gdc_sample_type": "Primary Tumor"} -C3N-04277.WGS.N C3N-04277 HNSCC WGS blood_normal CPT0245440002 CPT0245440002.WholeGenome.RP-1303.bam 80571265488 BAM aligned CPTAC3 4d681d4d-1a43-4203-bdc0-bf7d3b3ac588 8850783af7086dec7c7b36c4715f97c2 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-04277.WGS.N.hg38 C3N-04277 HNSCC WGS blood_normal CPT0245440002 ded41cd7-4f29-4c29-b3b3-0a88e5b36ce3_wgs_gdc_realn.bam 116942366055 BAM harmonized CPTAC3 a005d77e-4d3b-4266-a034-d87b3f806230 70d58080eca8ce6236c93490f1377864 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-04277.WGS.T C3N-04277 HNSCC WGS tumor CPT0245400006 CPT0245400006.WholeGenome.RP-1303.bam 91014384486 BAM aligned CPTAC3 bb413b01-d4ac-4e64-bb50-9a666b094f42 0ecafd124374e4cdbe5a2fbcd2a531ab {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor"} -C3N-04277.WGS.T.hg38 C3N-04277 HNSCC WGS tumor CPT0245400006 d524b6aa-694b-4555-b859-2195222b7693_wgs_gdc_realn.bam 134848594620 BAM harmonized CPTAC3 1b631119-75aa-4cc0-af3b-408b98a5a38c 41dc901ec5ed39913dbe7a97b2b4643a {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor"} -C3N-04277.WXS.N C3N-04277 HNSCC WXS blood_normal CPT0245440002 CPT0245440002.WholeExome.RP-1303.bam 44902244519 BAM aligned CPTAC3 d94ea175-6347-4518-b134-1756dad715e1 47362ee4d989e00b671bb4628e312136 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-04277.WXS.N.hg38 C3N-04277 HNSCC WXS blood_normal CPT0245440002 ded41cd7-4f29-4c29-b3b3-0a88e5b36ce3_wxs_gdc_realn.bam 61062282422 BAM harmonized CPTAC3 3b767a22-5f89-4998-88cb-399c914baf48 0c554cd2d3428fd2480e1e82af6fd815 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal"} -C3N-04277.WXS.T C3N-04277 HNSCC WXS tumor CPT0245400006 CPT0245400006.WholeExome.RP-1303.bam 25363045569 BAM aligned CPTAC3 acfb451b-9fdf-4da1-8ded-fb34fa59cb09 430b62288f7efdbc762fb361bd8c77f6 {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor"} -C3N-04277.WXS.T.hg38 C3N-04277 HNSCC WXS tumor CPT0245400006 d524b6aa-694b-4555-b859-2195222b7693_wxs_gdc_realn.bam 34834114374 BAM harmonized CPTAC3 819f6a6c-f33c-4281-9074-b2d5380dadf7 19a942d1422b98987388a3b76a13f52a {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor"} -C3N-04278.MethArray.Green.A C3N-04278 HNSCC Methylation_Array tissue_normal CPT0245460009 203281980233_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 ebd7ef93-bbc5-4df6-8eab-e1f8a6b0db3c ded189718d3a1f7aa67c5c85d8939eef {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.MethArray.Green.T C3N-04278 HNSCC Methylation_Array tumor CPT0245450006 203271740119_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ed2aab08-4f67-4dbd-97f2-c045f3519d07 920a4404cc623d356cf1b6942f1cb4eb {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor"} -C3N-04278.MethArray.Red.A C3N-04278 HNSCC Methylation_Array tissue_normal CPT0245460009 203281980233_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 16494bdb-31f6-4ff3-932c-039678bfafb2 9c600ae4f5881c03043f2a4b9deca0fa {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.MethArray.Red.T C3N-04278 HNSCC Methylation_Array tumor CPT0245450006 203271740119_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 87f1754b-1fc0-40b8-91c2-64702a22f7b6 efe9f4d44a3c1724a6e243d5259f9a54 {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor"} -C3N-04278.miRNA-Seq.A.hg38 C3N-04278 HNSCC miRNA-Seq tissue_normal CPT0245460006 2c15f9b3-6905-401b-ba4f-c451775c8464_mirnaseq_gdc_realn.bam 238252662 BAM harmonized CPTAC3 b8d70f9a-3374-4d5c-9e8d-3d4fc2c51014 b518689cd850326022964ad349fdf047 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.miRNA-Seq.S24_L006_R1.T C3N-04278 HNSCC miRNA-Seq tumor CPT0245450009 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L006_R1_001.unaln.bam 159561133 BAM S24_L006_R1 unaligned CPTAC3 4b481012-e1b6-412c-a657-6f199a41ef0f edc49763f9fd98c36a5e11dcdcf890cf {"aliquot_tag": "ALQ_caee23d4", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04278.miRNA-Seq.S38_L006_R1.A C3N-04278 HNSCC miRNA-Seq tissue_normal CPT0245460006 190228_UNC32-K00270_0151_AHYLY3BBXX_CTAGCT_S38_L006_R1_001.unaln.bam 210162375 BAM S38_L006_R1 unaligned CPTAC3 0f1f837f-820a-4638-8029-68172fc88bdc c14c51f28eb60c941dfa50a28c3ec2db {"aliquot_tag": "ALQ_1df14495", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.miRNA-Seq.T.hg38 C3N-04278 HNSCC miRNA-Seq tumor CPT0245450009 7df1e38d-96c9-4fe4-a77e-f5e7b816f1ba_mirnaseq_gdc_realn.bam 180876809 BAM harmonized CPTAC3 8d0fabf3-2486-4352-90f3-e390764957e3 640b51c5f28e6356331af76cd01c26a8 {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.chimeric.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.chimeric.gdc_realn.bam 25841884 BAM chimeric harmonized CPTAC3 5eb4445c-3835-4a72-9a46-4a6118ff9c87 1e00a4745566006be81e60fc4939a598 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.RNA-Seq.chimeric.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.chimeric.gdc_realn.bam 37952639 BAM chimeric harmonized CPTAC3 ef36a33a-c83e-45c0-82f8-3b4481002442 ea64597bc295f56570952c95c6cdd08f {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.chimeric.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.chimeric.gdc_realn.bam 61225362 BAM chimeric harmonized CPTAC3 e76d177f-b3c8-4c69-baaf-71834b568286 d7809ff81d071811593f46c361065565 {"aliquot_tag": "ALQ_e4929f5", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.genomic.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.genomic.gdc_realn.bam 7912702425 BAM genomic harmonized CPTAC3 f10e016a-5e35-4ea4-9728-5aa419225ada 11f5773fac0e63390af8e0a3c501eb74 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.RNA-Seq.genomic.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.genomic.gdc_realn.bam 8745461994 BAM genomic harmonized CPTAC3 833bca11-0ae4-4e59-b16b-d720aeb98fa9 b9536694c9fc8507d89bf0c4d35bf100 {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.genomic.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.genomic.gdc_realn.bam 4998805159 BAM genomic harmonized CPTAC3 d867d212-e2ea-4894-8ca5-30a65238d8c5 2819c001e14870548a48ad4cb1443a5d {"aliquot_tag": "ALQ_e4929f5", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.S14_L004_R1.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3786960941 FASTQ S14_L004_R1 unaligned CPTAC3 f116ba9a-6ffc-4e62-b9e9-41d02186ec2f 12620cf421ce72c82d48f3ca1f7cf1ba {"aliquot_tag": "ALQ_1df14495", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.RNA-Seq.S14_L004_R2.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4346845116 FASTQ S14_L004_R2 unaligned CPTAC3 f377d00d-66c1-474f-84ec-80b073a8d44f 9e1a67d180921b0c98788889ab6a9548 {"aliquot_tag": "ALQ_1df14495", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.RNA-Seq.S36_L008_R1.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R1_001.fastq.gz 4006013754 FASTQ S36_L008_R1 unaligned CPTAC3 e93328cd-f431-4fe7-aea0-a58c7f07d5b6 7c33f75da312028897d59d4b7abddd51 {"aliquot_tag": "ALQ_caee23d4", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.S36_L008_R2.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R2_001.fastq.gz 4609375882 FASTQ S36_L008_R2 unaligned CPTAC3 48978f66-2b5d-44d0-b70f-1ef3ed77511c d1d2a8fc1ba9d5056e674e28a3bcfb4b {"aliquot_tag": "ALQ_caee23d4", "sample": "S36", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.S3_R1.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R1_001.fastq.gz 3195072942 FASTQ S3_R1 unaligned CPTAC3 26c90ee3-5dd2-4143-b84b-3bc562492edf 49ffe57d4e6b9265d31c2b8511b62f27 {"aliquot_tag": "ALQ_e4929f5", "sample": "S3", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.S3_R2.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R2_001.fastq.gz 3308412929 FASTQ S3_R2 unaligned CPTAC3 ae3e9d1f-d4a3-4ca9-b91d-d4d5514bc475 4999d515e7992870b0746e2e3639c4b3 {"aliquot_tag": "ALQ_e4929f5", "sample": "S3", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.transcriptome.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.transcriptome.gdc_realn.bam 11773338645 BAM transcriptome harmonized CPTAC3 f756de53-1cd3-4a0c-b5f6-b2289d575d30 0bd4c4c4e1f5a2724cae373440d68224 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.RNA-Seq.transcriptome.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.transcriptome.gdc_realn.bam 10819062167 BAM transcriptome harmonized CPTAC3 73df4564-dbd0-4554-a4be-a1524bc0e9ac c928768b1b55e6c337d137db32aa862a {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor"} -C3N-04278.RNA-Seq.transcriptome.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.transcriptome.gdc_realn.bam 2797667556 BAM transcriptome harmonized CPTAC3 fbed7a04-7716-4404-9174-727017076efd 4de8e0f12f62c25d87c51e47acfc6e06 {"aliquot_tag": "ALQ_e4929f5", "gdc_sample_type": "Primary Tumor"} -C3N-04278.WGS.N C3N-04278 HNSCC WGS blood_normal CPT0245490002 CPT0245490002.WholeGenome.RP-1303.bam 88789519937 BAM aligned CPTAC3 c12b8c7e-aabb-4271-a583-568ddb53167b 93ae1fa4ac02cf2aef1256a6dc1b5b25 {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04278.WGS.N.hg38 C3N-04278 HNSCC WGS blood_normal CPT0245490002 1698bc58-9a69-423e-b393-b4cdf0838070_wgs_gdc_realn.bam 128708036498 BAM harmonized CPTAC3 c5ba06ee-14fc-4800-b977-bdbafe91c878 f5baf990efbb18c72235cfc8cf9f7599 {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04278.WGS.T C3N-04278 HNSCC WGS tumor CPT0245450006 CPT0245450006.WholeGenome.RP-1303.bam 80738739921 BAM aligned CPTAC3 f4a86786-c506-4ccc-a40e-f79f3b724f3e e476cdd591a141e04c494cc22ac2b9da {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor"} -C3N-04278.WGS.T.hg38 C3N-04278 HNSCC WGS tumor CPT0245450006 202c2042-86eb-4697-b84f-76937b28b503_wgs_gdc_realn.bam 116697926267 BAM harmonized CPTAC3 7098c6d8-04dc-435e-ac36-585af8d6f36c f15f0be304bd2f33baef1845428ad3f6 {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor"} -C3N-04278.WXS.A C3N-04278 HNSCC WXS tissue_normal CPT0245460009 CPT0245460009.WholeExome.RP-1303.bam 40439319031 BAM aligned CPTAC3 40feef2b-7214-4892-87c2-6d1e16da2275 3f8d905c6b445f4595038325457b9e48 {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.WXS.A.hg38 C3N-04278 HNSCC WXS tissue_normal CPT0245460009 fb693b26-501a-434f-9279-e4c2b17b72d7_wxs_gdc_realn.bam 56021522530 BAM harmonized CPTAC3 e56541f4-248a-4bf6-922c-a042241499d5 1116735efc9c3fd71cb4883a532475ee {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04278.WXS.N C3N-04278 HNSCC WXS blood_normal CPT0245490002 CPT0245490002.WholeExome.RP-1303.bam 29140132798 BAM aligned CPTAC3 7a9b3f96-df86-4f8a-974e-5bcdd6dcbb47 06860ff21273d2363be964ab5585c599 {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04278.WXS.N.hg38 C3N-04278 HNSCC WXS blood_normal CPT0245490002 1698bc58-9a69-423e-b393-b4cdf0838070_wxs_gdc_realn.bam 40074053707 BAM harmonized CPTAC3 9269ca26-631f-48e8-b8d2-7a5ac265a288 db8a3cdb3cb0930dbed49c95713726af {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal"} -C3N-04278.WXS.T C3N-04278 HNSCC WXS tumor CPT0245450006 CPT0245450006.WholeExome.RP-1303.bam 27087958101 BAM aligned CPTAC3 7d72f665-bc39-47af-9b9e-e0f52415f905 46c9ef4cbf8533188d602fcb567d5a8c {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor"} -C3N-04278.WXS.T.hg38 C3N-04278 HNSCC WXS tumor CPT0245450006 202c2042-86eb-4697-b84f-76937b28b503_wxs_gdc_realn.bam 36871221381 BAM harmonized CPTAC3 4866af2e-7573-410c-bd50-d10be39bf061 f4c74a4c26aa86b3ad553d2c13cf255f {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor"} -C3N-04279.MethArray.Green.T C3N-04279 HNSCC Methylation_Array tumor CPT0245500006 203273200080_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 02487f95-2a97-410e-869d-51304bd4e628 342cb1e57e24f6032cb8312b4901a2de {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor"} -C3N-04279.MethArray.Red.T C3N-04279 HNSCC Methylation_Array tumor CPT0245500006 203273200080_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 7c23075b-4326-499f-b4c8-7928e79c8f47 2edcc24391f89713736e7b866260a684 {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor"} -C3N-04279.miRNA-Seq.S25_L006_R1.T C3N-04279 HNSCC miRNA-Seq tumor CPT0245500009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L006_R1_001.unaln.bam 244751801 BAM S25_L006_R1 unaligned CPTAC3 6ac6f941-9d08-4dd9-ba5d-20335bcfb165 0181acdbc766873e67a251602f75612b {"aliquot_tag": "ALQ_c9527f01", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04279.miRNA-Seq.T.hg38 C3N-04279 HNSCC miRNA-Seq tumor CPT0245500009 1b064c7f-d3db-40d4-b4e2-6ff0249c93c7_mirnaseq_gdc_realn.bam 272663647 BAM harmonized CPTAC3 ad8656e3-e04c-4d0f-be34-54b536ecfad0 a1e3ce203afdc183640ab6a34022a01a {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor"} -C3N-04279.RNA-Seq.chimeric.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.chimeric.gdc_realn.bam 49783521 BAM chimeric harmonized CPTAC3 6924b4f4-f122-42c0-8a73-546c146426c4 32b1e729ac866d7b683aee6ad50b99ac {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor"} -C3N-04279.RNA-Seq.genomic.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.genomic.gdc_realn.bam 10500000357 BAM genomic harmonized CPTAC3 414ed355-5100-47c6-b986-b92e9423856d 3af4a8096ec72a360dd792440719b05c {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor"} -C3N-04279.RNA-Seq.S3_L001_R1.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R1_001.fastq.gz 5067816097 FASTQ S3_L001_R1 unaligned CPTAC3 e18cc86d-418f-4b3e-b147-a5d3ff1a666d ec2444a22912a24171ca72a460415d5a {"aliquot_tag": "ALQ_c9527f01", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04279.RNA-Seq.S3_L001_R2.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R2_001.fastq.gz 5664734231 FASTQ S3_L001_R2 unaligned CPTAC3 5913e13e-6f12-424d-aa77-b133749389ef c1dba02702783155b889147e3492ef7a {"aliquot_tag": "ALQ_c9527f01", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04279.RNA-Seq.transcriptome.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.transcriptome.gdc_realn.bam 14648698623 BAM transcriptome harmonized CPTAC3 00bd3adf-ef1a-44f3-93ae-4853ac38c440 93def6d74b8aea1e856b3e40fc864a05 {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor"} -C3N-04279.WGS.N C3N-04279 HNSCC WGS blood_normal CPT0245540002 CPT0245540002.WholeGenome.RP-1303.bam 63904079590 BAM aligned CPTAC3 58a16719-c89d-4928-99e1-79c2ef3b91cb d7998d1cadf84be353a9887df770dc89 {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal"} -C3N-04279.WGS.N.hg38 C3N-04279 HNSCC WGS blood_normal CPT0245540002 480b4742-a7e3-48ca-bf31-53b40d1456f0_wgs_gdc_realn.bam 92540253839 BAM harmonized CPTAC3 9fe2769e-a458-4a2e-b017-4c80ca2f097e 88b2e02e24427a8366804c31389b61cf {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal"} -C3N-04279.WGS.T C3N-04279 HNSCC WGS tumor CPT0245500006 CPT0245500006.WholeGenome.RP-1303.bam 64417570267 BAM aligned CPTAC3 40f3f878-3a17-4dd2-af08-960ec6bb5e99 f44d074ef9b2e95d9c87a41d55ca21ef {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor"} -C3N-04279.WGS.T.hg38 C3N-04279 HNSCC WGS tumor CPT0245500006 7792a94a-8f12-4bfd-9a83-a2350a24d202_wgs_gdc_realn.bam 92698666435 BAM harmonized CPTAC3 1bcfd7de-876e-4a89-a8de-a2b5ca428392 52c538048ea87d5354f136a435a470f4 {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor"} -C3N-04279.WXS.N C3N-04279 HNSCC WXS blood_normal CPT0245540002 CPT0245540002.WholeExome.RP-1303.bam 25103568805 BAM aligned CPTAC3 5d5bc1df-e691-4170-93c3-975129124a50 b3eae7a738e465256b6bcab743a6b730 {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal"} -C3N-04279.WXS.N.hg38 C3N-04279 HNSCC WXS blood_normal CPT0245540002 480b4742-a7e3-48ca-bf31-53b40d1456f0_wxs_gdc_realn.bam 34438232210 BAM harmonized CPTAC3 3897e540-b0e3-4082-8547-6515477b811d 62f03281653afc50dc969bb978609b61 {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal"} -C3N-04279.WXS.T C3N-04279 HNSCC WXS tumor CPT0245500006 CPT0245500006.WholeExome.RP-1303.bam 16311199090 BAM aligned CPTAC3 5caebd86-c768-4bc0-b213-dde36e776480 269b03282141ef535366c7c80d8dc55a {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor"} -C3N-04279.WXS.T.hg38 C3N-04279 HNSCC WXS tumor CPT0245500006 7792a94a-8f12-4bfd-9a83-a2350a24d202_wxs_gdc_realn.bam 23745058892 BAM harmonized CPTAC3 306f2a55-8846-4b02-b5f3-396fb6369671 f2d2013ac1d33f76c7feebb0e9cfb267 {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor"} -C3N-04280.MethArray.Green.T C3N-04280 HNSCC Methylation_Array tumor CPT0245600006 203273200073_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2e0d2669-df84-49ac-aca0-ed2ee4217f7f 0b9da0f75b16055443bdb3940894b5f5 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor"} -C3N-04280.MethArray.Red.T C3N-04280 HNSCC Methylation_Array tumor CPT0245600006 203273200073_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 217ff55e-3778-4227-84bb-e1e52f2f3949 26316724a7e46f1dc4c419d3bf9ffbbd {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor"} -C3N-04280.miRNA-Seq.S27_L006_R1.T C3N-04280 HNSCC miRNA-Seq tumor CPT0245600009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATTCCT_S27_L006_R1_001.unaln.bam 194265845 BAM S27_L006_R1 unaligned CPTAC3 ec878cc4-39e0-40cb-9532-1c1ad537c67e 199b802976f07fc3798e7e2029f0b4dc {"aliquot_tag": "ALQ_4fc60daf", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04280.miRNA-Seq.T.hg38 C3N-04280 HNSCC miRNA-Seq tumor CPT0245600009 66cfccf2-5cf0-4b5d-9a06-aeba36c1361a_mirnaseq_gdc_realn.bam 222701478 BAM harmonized CPTAC3 495ed7e8-a134-470e-8e6e-1f3cf409be37 1609048b09d847765fcb83b1f33532ec {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.chimeric.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.chimeric.gdc_realn.bam 36842183 BAM chimeric harmonized CPTAC3 eac4efcb-3e53-411c-8275-ce823cf8a5c2 ac5f76c2f0d082b9b18f7294a063ee27 {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.chimeric.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.chimeric.gdc_realn.bam 259489468 BAM chimeric harmonized CPTAC3 75e08857-4280-4e6b-8f2a-13ce2eca5cdc 26c24dd03302de3b39345e94194ee9b2 {"aliquot_tag": "ALQ_79daefb", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.genomic.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.genomic.gdc_realn.bam 8180793267 BAM genomic harmonized CPTAC3 bc0998dc-9a0f-4af9-a7ba-e50ffb8c055f d6741b83a703032099b92765a49e7c56 {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.genomic.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.genomic.gdc_realn.bam 13752443573 BAM genomic harmonized CPTAC3 d5925d26-32ef-4501-acf6-a3fea534a2ef d781113754a0f604367e800cc6a9a587 {"aliquot_tag": "ALQ_79daefb", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.S1_L001_R1.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R1_001.fastq.gz 3717916985 FASTQ S1_L001_R1 unaligned CPTAC3 891ebcec-52f4-4ca9-ba9c-66030838f59f 3487acfe3780026ee44e6c4a3702591e {"aliquot_tag": "ALQ_4fc60daf", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.S1_L001_R2.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R2_001.fastq.gz 4278515231 FASTQ S1_L001_R2 unaligned CPTAC3 bb6805d0-d597-4650-b2fa-2b49d5f94e07 e8e696182987b45ab10e070369c006ac {"aliquot_tag": "ALQ_4fc60daf", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.S30_R1.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R1_001.fastq.gz 9905839657 FASTQ S30_R1 unaligned CPTAC3 745c0577-a2df-4088-bfb7-e9cafae61616 12b95bc629c082dccca64816156db09b {"aliquot_tag": "ALQ_79daefb", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.S30_R2.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R2_001.fastq.gz 10266132413 FASTQ S30_R2 unaligned CPTAC3 f8be5a53-0cec-43c9-89ff-6313ea3f1424 7f0a2c2fe5298d75a8713d8a04deae3a {"aliquot_tag": "ALQ_79daefb", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.transcriptome.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.transcriptome.gdc_realn.bam 11934457478 BAM transcriptome harmonized CPTAC3 0760ec2c-7efd-4e95-b3af-4bfc33a084ce 0818877828ac8d3954a5455ab84e2602 {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor"} -C3N-04280.RNA-Seq.transcriptome.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.transcriptome.gdc_realn.bam 8986638798 BAM transcriptome harmonized CPTAC3 ab052b98-4d65-4380-b009-24b024333692 6bef34b7046a6c7f923b854ad1a97628 {"aliquot_tag": "ALQ_79daefb", "gdc_sample_type": "Primary Tumor"} -C3N-04280.WGS.N C3N-04280 HNSCC WGS blood_normal CPT0245620002 CPT0245620002.WholeGenome.RP-1303.bam 67963317267 BAM aligned CPTAC3 186f0782-06f3-4a56-a135-8b83a0bbb2d2 4d639e0562a08efde7168e3e5e58d654 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal"} -C3N-04280.WGS.N.hg38 C3N-04280 HNSCC WGS blood_normal CPT0245620002 ddd24fc1-29d9-4388-9e4f-df69a9ba3818_wgs_gdc_realn.bam 98820582386 BAM harmonized CPTAC3 a0c3c495-4c00-4b9d-8a1e-5c18e1e26354 c950605e60f9e0d37dc4d1d3ccfaa114 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal"} -C3N-04280.WGS.T C3N-04280 HNSCC WGS tumor CPT0245600006 CPT0245600006.WholeGenome.RP-1303.bam 79439042933 BAM aligned CPTAC3 9c1a26c2-ab4a-4709-b28d-1a30349228fb 859c2e3016cf9d03db052ecac375a303 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor"} -C3N-04280.WGS.T.hg38 C3N-04280 HNSCC WGS tumor CPT0245600006 1bce2290-d038-47b2-92ac-a20cfc946a0f_wgs_gdc_realn.bam 117418916294 BAM harmonized CPTAC3 00827887-f68a-496e-b6e4-b638c981dd6b f69ce53878f82e07540830ee279172e4 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor"} -C3N-04280.WXS.N C3N-04280 HNSCC WXS blood_normal CPT0245620002 CPT0245620002.WholeExome.RP-1303.bam 23227317057 BAM aligned CPTAC3 a32922f2-1996-4f71-898a-e53c99e4b3ef 5f3c1f256bd3a8a3e79986aebb431887 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal"} -C3N-04280.WXS.N.hg38 C3N-04280 HNSCC WXS blood_normal CPT0245620002 ddd24fc1-29d9-4388-9e4f-df69a9ba3818_wxs_gdc_realn.bam 31357305752 BAM harmonized CPTAC3 aa9cbe3e-c02c-4cd2-a661-22267b4282b5 b53f99a966ddf2b4fb59b804a351bdc9 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal"} -C3N-04280.WXS.T C3N-04280 HNSCC WXS tumor CPT0245600006 CPT0245600006.WholeExome.RP-1303.bam 24635257039 BAM aligned CPTAC3 57fe8a3d-566d-4d3c-9bf1-d7b90b123ac3 373af67593488be4b99fc646d0a44156 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor"} -C3N-04280.WXS.T.hg38 C3N-04280 HNSCC WXS tumor CPT0245600006 1bce2290-d038-47b2-92ac-a20cfc946a0f_wxs_gdc_realn.bam 33650528950 BAM harmonized CPTAC3 0509fdc4-cdfe-4333-93db-4329e64996fc ee0b246a3ff3317645437479dcf7ff73 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor"} -C3N-04282.MethArray.Green.T C3N-04282 PDA Methylation_Array tumor CPT0246990006 203561450030_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8ac43f33-f39d-4a18-9c82-d7521f6d4c73 de700613ce166b90635a1f6b7630dcd3 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor"} -C3N-04282.MethArray.Red.T C3N-04282 PDA Methylation_Array tumor CPT0246990006 203561450030_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 91473de4-0fba-403c-863b-5108f5a93f02 113e37d2cd337281a32d8b769f51bf8d {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor"} -C3N-04282.miRNA-Seq.S30_L005_R1.T C3N-04282 PDA miRNA-Seq tumor CPT0246990009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGATC_S30_L005_R1_001.unaln.bam 257103157 BAM S30_L005_R1 unaligned CPTAC3 ec35cf8d-05b6-4010-8dc9-457c3a634436 96acbaad5c056dea97f679c47d9d0b14 {"aliquot_tag": "ALQ_8268c796", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04282.miRNA-Seq.T.hg38 C3N-04282 PDA miRNA-Seq tumor CPT0246990009 8c18775f-8108-49de-a460-79a1c78effb0_mirnaseq_gdc_realn.bam 294680142 BAM harmonized CPTAC3 8f1e49e1-087a-4b8a-b007-7f13a667c47e 4e694905f9b89679db95287d50cd3ca6 {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor"} -C3N-04282.RNA-Seq.chimeric.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.chimeric.gdc_realn.bam 36220855 BAM chimeric harmonized CPTAC3 13f149fc-c9e5-4242-a4a0-c13cc22a22b0 b6aa4acc9978a2bd863e20d3b70d2dd6 {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor"} -C3N-04282.RNA-Seq.genomic.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.genomic.gdc_realn.bam 8354009656 BAM genomic harmonized CPTAC3 660ffc8b-0133-42e3-90bd-1e29aec1b2b3 e62eebaa286d8151df338e24de6f07ba {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor"} -C3N-04282.RNA-Seq.S32_L008_R1.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R1_001.fastq.gz 4063994812 FASTQ S32_L008_R1 unaligned CPTAC3 48f5ca48-36ca-489c-a76e-2623665b37c3 2204a5fcd3bbc865f7a206c9438e8d93 {"aliquot_tag": "ALQ_8268c796", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04282.RNA-Seq.S32_L008_R2.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R2_001.fastq.gz 4277690135 FASTQ S32_L008_R2 unaligned CPTAC3 8fdb2cd9-06ab-4ce2-8a7f-505bf4301343 6597b8cfab9743a46d62afa8159a2b05 {"aliquot_tag": "ALQ_8268c796", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04282.RNA-Seq.transcriptome.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.transcriptome.gdc_realn.bam 12017077144 BAM transcriptome harmonized CPTAC3 99743a01-3836-4db2-b811-a8cc6d2b7672 b0937b767eed61cbe88599376dee1f8f {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor"} -C3N-04282.WGS.N C3N-04282 PDA WGS blood_normal CPT0247030002 CPT0247030002.WholeGenome.RP-1303.bam 73489342106 BAM aligned CPTAC3 f46215cf-6a46-4762-9d48-07d2a88de5ce 28c6d25eabf77dd830d337f6a5386c3b {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-04282.WGS.N.hg38 C3N-04282 PDA WGS blood_normal CPT0247030002 855b4f54-6be8-4afb-bbd3-ee97f4f24be0_wgs_gdc_realn.bam 106703114601 BAM harmonized CPTAC3 fa9b3384-b318-4c8e-99d9-f3eff1da3b0b d4ca040fff8455eb3e8592fec6353ab2 {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-04282.WGS.T C3N-04282 PDA WGS tumor CPT0246990006 CPT0246990006.WholeGenome.RP-1303.bam 103759528602 BAM aligned CPTAC3 99ec9a41-36af-4a05-92c8-ace73f988a11 338f4a8b9565206c89e4e82d237efbaf {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor"} -C3N-04282.WGS.T.hg38 C3N-04282 PDA WGS tumor CPT0246990006 b9201c7a-1778-46da-a3fe-855315fe403a_wgs_gdc_realn.bam 153752895005 BAM harmonized CPTAC3 4b4adaeb-0f11-4e13-81b9-6a44457ed7ac 19e93f03250cdd57f35d5afab20b01d3 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor"} -C3N-04282.WXS.N C3N-04282 PDA WXS blood_normal CPT0247030002 CPT0247030002.WholeExome.RP-1303.bam 24308464208 BAM aligned CPTAC3 4af2f9ed-4ed4-4696-b2cc-8299c7ef333e 0dfbd0c0cb621d1c58bcd505057b7a3b {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-04282.WXS.N.hg38 C3N-04282 PDA WXS blood_normal CPT0247030002 855b4f54-6be8-4afb-bbd3-ee97f4f24be0_wxs_gdc_realn.bam 33740715868 BAM harmonized CPTAC3 88cf8b47-669f-4cb3-8693-86faab8ac059 eb5f11162f119b4bc382611723c9c14e {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal"} -C3N-04282.WXS.T C3N-04282 PDA WXS tumor CPT0246990006 CPT0246990006.WholeExome.RP-1303.bam 52032367899 BAM aligned CPTAC3 f2414ee9-4ec7-41be-a11b-2f01927b27d1 ed724bc6da925e81d4cffea7362a1a47 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor"} -C3N-04282.WXS.T.hg38 C3N-04282 PDA WXS tumor CPT0246990006 b9201c7a-1778-46da-a3fe-855315fe403a_wxs_gdc_realn.bam 72039656975 BAM harmonized CPTAC3 f02a832c-5a01-4b81-ab6b-b83ad3a3c15c f994312a28724b745ec01a27b62d1389 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor"} -C3N-04283.MethArray.Green.A C3N-04283 PDA Methylation_Array tissue_normal CPT0247050005 203561620153_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e3602b90-8032-46fb-b8e5-850aaaec8537 69167aed33c7406798df19887d9cfec6 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.MethArray.Green.T C3N-04283 PDA Methylation_Array tumor CPT0247040009 203561620064_R01C01_Grn.idat 13676212 IDAT Green NA CPTAC3 37702234-31bc-449a-b277-276646ca8f2b 1e88c116bb79e55ead2c2b227fb485bf {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor"} -C3N-04283.MethArray.Red.A C3N-04283 PDA Methylation_Array tissue_normal CPT0247050005 203561620153_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 e6d61efc-a1c0-41b2-9033-fa91694e36ba 1f5358a2832c14dfbb8e0983435ec547 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.MethArray.Red.T C3N-04283 PDA Methylation_Array tumor CPT0247040009 203561620064_R01C01_Red.idat 13676212 IDAT Red NA CPTAC3 d56d14d9-0230-4e2c-afc1-987b9ac50373 96ce42473552faa1effe60ba7f559794 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor"} -C3N-04283.miRNA-Seq.A.hg38 C3N-04283 PDA miRNA-Seq tissue_normal CPT0247050008 191d4059-d2f9-4667-af41-b657add5f0e2_mirnaseq_gdc_realn.bam 405369372 BAM harmonized CPTAC3 19a2ec61-ac7f-45f3-869b-0d3914d2a750 e66aacb1bed54267e04af1e8da7a54c6 {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.miRNA-Seq.S134_L008_R1.A C3N-04283 PDA miRNA-Seq tissue_normal CPT0247050008 190828_UNC32-K00270_0200_BH7GVJBBXY_CCGTCC_S134_L008_R1_001.unaln.bam 363015554 BAM S134_L008_R1 unaligned CPTAC3 99a84e05-79d3-4de7-b7a6-53f484b5d9fe fdd0f6b02fa256152a9504467f6f9a27 {"aliquot_tag": "ALQ_b1e7407d", "sample": "S134", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.miRNA-Seq.S17_L004_R1.T C3N-04283 PDA miRNA-Seq tumor CPT0247040006 190712_UNC32-K00270_0192_BH7HL3BBXY_GACGAC_S17_L004_R1_001.unaln.bam 214184402 BAM S17_L004_R1 unaligned CPTAC3 6ece89d2-f497-43fc-bfe7-73e90b5090cb 024e32e605bacbca61fec3f713b15695 {"aliquot_tag": "ALQ_6b3f44ca", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04283.miRNA-Seq.T.hg38 C3N-04283 PDA miRNA-Seq tumor CPT0247040006 ed60922c-bb9c-46f8-b289-c7dea5afe5fd_mirnaseq_gdc_realn.bam 243853128 BAM harmonized CPTAC3 81eaf3a9-719b-4e99-83c9-b7addfe9e5c6 c061b7f336f8a532bbe55f4093218e2e {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor"} -C3N-04283.RNA-Seq.chimeric.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.chimeric.gdc_realn.bam 35945383 BAM chimeric harmonized CPTAC3 e9a63f53-7337-4e4f-9687-ebd9dcb6faa0 279e40045cd635ec95c77b64cc81f8b0 {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.RNA-Seq.chimeric.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.chimeric.gdc_realn.bam 30557595 BAM chimeric harmonized CPTAC3 075cb67b-06aa-4526-a7b3-2caff7f8dc6c bcbb1829143952cee6892095968899d2 {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor"} -C3N-04283.RNA-Seq.genomic.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.genomic.gdc_realn.bam 8989527794 BAM genomic harmonized CPTAC3 ae59050d-76e0-4c42-a4ef-8a8871ac76df 84c3021d65964eb10f087d59301ef18e {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.RNA-Seq.genomic.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.genomic.gdc_realn.bam 8780238700 BAM genomic harmonized CPTAC3 c2fe4d94-3c59-4dd5-b640-56eddc127024 11c4675136fb4812b10851f0c39164a8 {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor"} -C3N-04283.RNA-Seq.S14_L005_R1.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R1_001.fastq.gz 4132845700 FASTQ S14_L005_R1 unaligned CPTAC3 8ed41278-1ed2-43c8-862c-5a7f96cec395 3c0152f24a6a3a113d250c379b6549a8 {"aliquot_tag": "ALQ_b1e7407d", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.RNA-Seq.S14_L005_R2.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R2_001.fastq.gz 4510226646 FASTQ S14_L005_R2 unaligned CPTAC3 e029eda1-f5a9-4e79-8ba3-65c0d6c76042 c28fd26f03e834d7ba24db21f25fe561 {"aliquot_tag": "ALQ_b1e7407d", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.RNA-Seq.S6_L002_R1.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 3966628698 FASTQ S6_L002_R1 unaligned CPTAC3 3c3a6510-d2eb-4e12-88f5-5ed58b63d965 c9cc02d326cd90324d5e4d29f655ce7a {"aliquot_tag": "ALQ_6b3f44ca", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04283.RNA-Seq.S6_L002_R2.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 4636411008 FASTQ S6_L002_R2 unaligned CPTAC3 fabcefa5-c60a-4ebc-8840-b9709950055a c1b8220494a00ba90e84c1e2c2a6335b {"aliquot_tag": "ALQ_6b3f44ca", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04283.RNA-Seq.transcriptome.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.transcriptome.gdc_realn.bam 12502097571 BAM transcriptome harmonized CPTAC3 2dbd1601-994b-4857-a9ea-27f65e6c894b 538452b38a36496cdba906fe1ce59e09 {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.RNA-Seq.transcriptome.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.transcriptome.gdc_realn.bam 12159907215 BAM transcriptome harmonized CPTAC3 55c55916-1175-49e2-8cab-b1525c18c432 de2c516f842c04514562026cb5aa662a {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor"} -C3N-04283.WGS.N C3N-04283 PDA WGS blood_normal CPT0247080002 CPT0247080002.WholeGenome.RP-1303.bam 57701659368 BAM aligned CPTAC3 62cf2fdb-aa4d-4f53-8435-4cd397e61c9c be4a2455786cd4b4fa05fac67818a965 {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04283.WGS.N.hg38 C3N-04283 PDA WGS blood_normal CPT0247080002 bc2dcac2-e6ee-4a15-a8d4-7c7ec9e20803_wgs_gdc_realn.bam 83831756286 BAM harmonized CPTAC3 68486306-850f-4b64-9c79-2448b592b7a2 01503550421a3c7870e7ec5ade3a28cd {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04283.WGS.T C3N-04283 PDA WGS tumor CPT0247040009 CPT0247040009.WholeGenome.RP-1303.bam 142915227908 BAM aligned CPTAC3 0d27a1bc-bd9e-4359-8513-07a62ee93f30 f67896fd1ea6d19e1822ca1c5377af11 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor"} -C3N-04283.WGS.T.hg38 C3N-04283 PDA WGS tumor CPT0247040009 3b4ac015-1920-44e7-b290-0362a5fdf236_wgs_gdc_realn.bam 208355110413 BAM harmonized CPTAC3 50752b3f-b8d9-44b0-8d6c-d726531c0093 93ec800db5e74daa57d3f61158aacae2 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor"} -C3N-04283.WXS.A C3N-04283 PDA WXS tissue_normal CPT0247050005 CPT0247050005.WholeExome.RP-1303.bam 26159471271 BAM aligned CPTAC3 1725dc7a-29c2-4129-b453-fdc48ee345ed 92771a40c563edecc21da254257f6a83 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.WXS.A.hg38 C3N-04283 PDA WXS tissue_normal CPT0247050005 abfacc07-0b67-4c14-a858-aee8fc48c843_wxs_gdc_realn.bam 36546346320 BAM harmonized CPTAC3 a46bd743-1752-456a-8b9d-3a15470659a0 ccc6fc22b57084443c33484a2ec61dc2 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04283.WXS.N C3N-04283 PDA WXS blood_normal CPT0247080002 CPT0247080002.WholeExome.RP-1303.bam 27368854504 BAM aligned CPTAC3 c8e3481a-aa09-41aa-9787-84a5ba053806 155c256e3768cc66aafd8177dc10baf2 {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04283.WXS.N.hg38 C3N-04283 PDA WXS blood_normal CPT0247080002 bc2dcac2-e6ee-4a15-a8d4-7c7ec9e20803_wxs_gdc_realn.bam 37730649862 BAM harmonized CPTAC3 bcc86397-2e8b-4ef5-8fa7-3f220f311398 4a80c736c80c6b89180d498265896c90 {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04283.WXS.T C3N-04283 PDA WXS tumor CPT0247040009 CPT0247040009.WholeExome.RP-1303.bam 53275036035 BAM aligned CPTAC3 2541b0b5-3262-45e4-aea1-bb48a5fd4a00 679e3cccbe18d2ca88bfa1a997d99633 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor"} -C3N-04283.WXS.T.hg38 C3N-04283 PDA WXS tumor CPT0247040009 3b4ac015-1920-44e7-b290-0362a5fdf236_wxs_gdc_realn.bam 73948144506 BAM harmonized CPTAC3 5314f1eb-eee2-426b-8982-e854fae19b5c 7a1af684023b79073fd7fc07566036f4 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor"} -C3N-04284.MethArray.Green.T C3N-04284 PDA Methylation_Array tumor CPT0247090006 203561450046_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 22b51d39-b5af-4a68-bba3-3e655913745d ad4bdfeef38d6cd0bced1ce9bc864233 {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor"} -C3N-04284.MethArray.Red.T C3N-04284 PDA Methylation_Array tumor CPT0247090006 203561450046_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 181674ef-8fee-4353-826d-3fc57019280a 2de7bcbbc271e74809b406f41fb606dd {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor"} -C3N-04284.miRNA-Seq.S23_L003_R1.T C3N-04284 PDA miRNA-Seq tumor CPT0247090013 190813_UNC32-K00270_0196_AH5MCWBBXY_TCGAAG_S23_L003_R1_001.unaln.bam 149310583 BAM S23_L003_R1 unaligned CPTAC3 8ec06311-31b1-48db-b0fb-1e7b9a03451d 0bab03d9b6f99e2e2c43e2361c3296b1 {"aliquot_tag": "ALQ_fade45b5", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04284.miRNA-Seq.T.hg38 C3N-04284 PDA miRNA-Seq tumor CPT0247090013 477e974f-bc22-441e-9b64-f15b6e2c8cdb_mirnaseq_gdc_realn.bam 170870153 BAM harmonized CPTAC3 ce8350c3-ca82-497b-b1f6-13e6d9e90cca 93f849e47a1b260c02c7f14c7d3399e0 {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor"} -C3N-04284.RNA-Seq.chimeric.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.chimeric.gdc_realn.bam 28773705 BAM chimeric harmonized CPTAC3 3c7b0dc0-0ae4-4a49-a82c-f7a9be7f6ddf b6e2a1f50a792ceecebc64c570baafce {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor"} -C3N-04284.RNA-Seq.genomic.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.genomic.gdc_realn.bam 7886783443 BAM genomic harmonized CPTAC3 43f8c6d4-7317-4efc-9aa5-631d11354b23 b57f79fcf326af37ed9e7bfa10a926f9 {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor"} -C3N-04284.RNA-Seq.S9_L003_R1.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R1_001.fastq.gz 3752966426 FASTQ S9_L003_R1 unaligned CPTAC3 54995544-cea1-42b1-9af1-0c6fd5b2727d 1c6b47f1c52286e384f5bc3960f8c7eb {"aliquot_tag": "ALQ_fade45b5", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04284.RNA-Seq.S9_L003_R2.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R2_001.fastq.gz 3852584043 FASTQ S9_L003_R2 unaligned CPTAC3 c7f1226b-4f3f-46c0-9361-c778198eff96 0a37b57ce1804d8a8423339843949c0d {"aliquot_tag": "ALQ_fade45b5", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04284.RNA-Seq.transcriptome.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.transcriptome.gdc_realn.bam 10906831101 BAM transcriptome harmonized CPTAC3 d90ac12b-5f40-402a-b07d-7654cb98aa9f 4e6a6636146a8126a52c173b81ee77b0 {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor"} -C3N-04284.WGS.N C3N-04284 PDA WGS blood_normal CPT0247130002 CPT0247130002.WholeGenome.RP-1303.bam 64323938003 BAM aligned CPTAC3 375b14c1-a31d-4a1e-81ba-2004483156bb 2f1e3652b618562d04e14bc37d119312 {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal"} -C3N-04284.WGS.N.hg38 C3N-04284 PDA WGS blood_normal CPT0247130002 267e0dfc-7fad-4927-9713-c9930f88228e_wgs_gdc_realn.bam 92759383551 BAM harmonized CPTAC3 1159f63b-46c4-4644-9f13-31db06ddda11 908e762a2c2b8823f0f3eaa59d619e3a {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal"} -C3N-04284.WGS.T C3N-04284 PDA WGS tumor CPT0247090006 CPT0247090006.WholeGenome.RP-1303.PDO-18613.bam 111133657158 BAM aligned CPTAC3 1df6d799-13a8-415f-b93b-5cbdccd1f44b 35b73db5fa414032542ec947d9ad29d0 {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor"} -C3N-04284.WGS.T.hg38 C3N-04284 PDA WGS tumor CPT0247090006 57a37074-e98a-44e8-bd51-641dce6ec71a_wgs_gdc_realn.bam 160780257821 BAM harmonized CPTAC3 a27b8b86-02e7-4cc2-8cb3-2442be543a8a d6d36afaaff786cb5e890734901452de {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor"} -C3N-04284.WXS.N C3N-04284 PDA WXS blood_normal CPT0247130002 CPT0247130002.WholeExome.RP-1303.bam 23146184851 BAM aligned CPTAC3 b835e26b-e2c0-41b3-8a79-da40e1a0eb55 a46e548479bdf2b81841929d3cdbbfd9 {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal"} -C3N-04284.WXS.N.hg38 C3N-04284 PDA WXS blood_normal CPT0247130002 267e0dfc-7fad-4927-9713-c9930f88228e_wxs_gdc_realn.bam 31901277566 BAM harmonized CPTAC3 dad34357-4344-40ce-b9e5-794565a9c387 faca712c5b1553fcde076d0ae0ccec06 {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal"} -C3N-04284.WXS.T C3N-04284 PDA WXS tumor CPT0247090006 CPT0247090006.WholeExome.RP-1303.bam 30050208600 BAM aligned CPTAC3 2ed8b8e0-b440-47ee-98ba-6229fdaecf6d 8d599e7e3337050c76360c3621bfa07a {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor"} -C3N-04284.WXS.T.hg38 C3N-04284 PDA WXS tumor CPT0247090006 57a37074-e98a-44e8-bd51-641dce6ec71a_wxs_gdc_realn.bam 40765262197 BAM harmonized CPTAC3 5bedf850-c4c7-4223-bb3e-5bc9eb227787 7572343c3e123379a98a67744dce0711 {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor"} -C3N-04288.RNA-Seq.chimeric.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.chimeric.gdc_realn.bam 117514977 BAM chimeric harmonized CPTAC3 f3fcc9c9-14c1-46a6-85bb-a35e583cd2be 67e0c843105b4c580733c3de0cfea430 {"aliquot_tag": "ALQ_36d3412f", "gdc_sample_type": "Primary Tumor"} -C3N-04288.RNA-Seq.genomic.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.genomic.gdc_realn.bam 8642687385 BAM genomic harmonized CPTAC3 1c0f9685-9856-4611-af95-532f95b957c6 ea8b872b83f5b56ea4bafe6afca8b2bd {"aliquot_tag": "ALQ_36d3412f", "gdc_sample_type": "Primary Tumor"} -C3N-04288.RNA-Seq.S56_R1.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R1_001.fastq.gz 6458078126 FASTQ S56_R1 unaligned CPTAC3 739c7d8c-9cf6-42fe-ac40-e9aa4e714697 56bad53ac19dd1f71bd6c2805eb57215 {"aliquot_tag": "ALQ_36d3412f", "sample": "S56", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04288.RNA-Seq.S56_R2.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R2_001.fastq.gz 6736441288 FASTQ S56_R2 unaligned CPTAC3 7769ab5f-e80e-4d7c-b204-e26c8dd7a925 552ba651ed1778af39bcd44d024bbf98 {"aliquot_tag": "ALQ_36d3412f", "sample": "S56", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04288.RNA-Seq.transcriptome.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.transcriptome.gdc_realn.bam 6327404540 BAM transcriptome harmonized CPTAC3 b18906aa-c9fa-4b98-8d86-781dd3abf6dd 76c48f78c8f261f1dd0404545fb19964 {"aliquot_tag": "ALQ_36d3412f", "gdc_sample_type": "Primary Tumor"} -C3N-04312.MethArray.Green.T C3N-04312 GBM Methylation_Array tumor CPT0285670006 204372030011_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66bf3820-3c75-417b-863f-86e0b1e44443 3f5ce1fad8fd5c4893cd42647606cca8 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor"} -C3N-04312.MethArray.Red.T C3N-04312 GBM Methylation_Array tumor CPT0285670006 204372030011_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 0d747cb9-cda6-4975-af25-5e0b39b351c7 67254b80bea4828ea03573eab55d48e8 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor"} -C3N-04312.miRNA-Seq.S37_L002_R1.T C3N-04312 GBM miRNA-Seq tumor CPT0285670009 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 273660927 BAM S37_L002_R1 unaligned CPTAC3 e7f6effd-e817-4e2b-8c06-576689dab185 3db8326fa4fc6c21832b4c4dc62c531d {"aliquot_tag": "ALQ_aa49c4f0", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04312.miRNA-Seq.T.hg38 C3N-04312 GBM miRNA-Seq tumor CPT0285670009 51030b5e-f536-41d9-acf7-8908bfc76d55_mirnaseq_gdc_realn.bam 307510606 BAM harmonized CPTAC3 5421b9bc-b81d-4d9d-97f9-c80fc5dd5b3f d6b98cce43056b89d0ccd3f7abe72722 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor"} -C3N-04312.RNA-Seq.chimeric.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.chimeric.gdc_realn.bam 412012482 BAM chimeric harmonized CPTAC3 cbfd8fb4-027b-4a99-9615-b342027635b2 a26b016688ab93f240b2307fc37cabe7 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor"} -C3N-04312.RNA-Seq.genomic.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.genomic.gdc_realn.bam 9522050418 BAM genomic harmonized CPTAC3 c8516ebf-2636-4711-9258-85b2abba1685 4759239345abb0c614c62a8145de8205 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor"} -C3N-04312.RNA-Seq.S5_L002_R1.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R1_001.fastq.gz 4121966646 FASTQ S5_L002_R1 unaligned CPTAC3 b9ffa766-00b4-43fc-9cdd-d894a2cdce9c 58c978bf02f4306e6d0708151bb8e7ea {"aliquot_tag": "ALQ_aa49c4f0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04312.RNA-Seq.S5_L002_R2.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ S5_L002_R2 unaligned CPTAC3 7db80f50-b30d-44fc-9bc6-e03eb048a892 d6edbf143dafb72e6519f0966e519dce {"aliquot_tag": "ALQ_aa49c4f0", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04312.RNA-Seq.transcriptome.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.transcriptome.gdc_realn.bam 10048761309 BAM transcriptome harmonized CPTAC3 5a3e0587-83cd-4786-9d56-a28f288e7bc4 c035e3933ce4733c9639cb466d408fa8 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor"} -C3N-04312.WGS.N C3N-04312 GBM WGS blood_normal CPT0280980002 CPT0280980002.WholeGenome.RP-2158.bam 23874939224 BAM aligned CPTAC3 9a3c3468-1221-4b91-bc33-9b090e555ab5 97a8ffb0f4066f0a6e88edb4b40cdbe6 {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04312.WGS.N.hg38 C3N-04312 GBM WGS blood_normal CPT0280980002 37205469-4d6f-486b-905f-c54392d21b4f_wgs_gdc_realn.bam 71335743020 BAM harmonized CPTAC3 014f16a2-6c7b-4b66-b1a8-2e5579964f02 c062b3939d85c8d8449078c2a5bbe569 {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04312.WGS.T C3N-04312 GBM WGS tumor CPT0285670006 CPT0285670006.WholeGenome.RP-2158.bam 26413654675 BAM aligned CPTAC3 74fffef0-59b5-41fd-8d10-2d385a875c65 93de20b937fb1e1a47c73b2b0af4e071 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor"} -C3N-04312.WGS.T.hg38 C3N-04312 GBM WGS tumor CPT0285670006 1c1ab64b-1728-442b-9e26-f37a1af24c9f_wgs_gdc_realn.bam 78477381968 BAM harmonized CPTAC3 f5e56aed-38b7-45b3-aebe-8a1da8246495 029a28ed71de12c082a040f94b254548 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor"} -C3N-04312.WXS.N C3N-04312 GBM WXS blood_normal CPT0280980002 CPT0280980002.WholeExome.RP-1303.bam 21334418826 BAM aligned CPTAC3 bc94877a-1cb7-4597-8480-977e29c70ed4 0fa9d88614fb7cbb869ba1c932f223fc {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04312.WXS.N.hg38 C3N-04312 GBM WXS blood_normal CPT0280980002 37205469-4d6f-486b-905f-c54392d21b4f_wxs_gdc_realn.bam 29415715888 BAM harmonized CPTAC3 8261bf69-e50f-4985-a7ff-67a826adb3b2 e3a5acfeba6ae62e5d174ab2298440aa {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal"} -C3N-04312.WXS.T C3N-04312 GBM WXS tumor CPT0285670006 CPT0285670006.WholeExome.RP-1303.bam 24513284506 BAM aligned CPTAC3 930d98e1-e130-48bd-a15b-58abbaefcfb1 d1083ef1ef6807e26d8315a36ab52ee7 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor"} -C3N-04312.WXS.T.hg38 C3N-04312 GBM WXS tumor CPT0285670006 1c1ab64b-1728-442b-9e26-f37a1af24c9f_wxs_gdc_realn.bam 34483195424 BAM harmonized CPTAC3 4edbb076-c48b-46a8-9467-2ebb7b64d243 dc006ae116c838500f4f93128f5772cf {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor"} -C3N-04382.MethArray.Green.A C3N-04382 LUAD Methylation_Array tissue_normal CPT0240680006 203561620080_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 28023d7c-09c1-4396-9e1d-34c90d43e962 b37eaf7f93c0a7c7d5d0bc7355818fda {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.MethArray.Green.T C3N-04382 LUAD Methylation_Array tumor CPT0240670006 203561450102_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 00bc5a09-9d45-4f23-a793-1b298a009941 9699a407873611b6809674adf047d3d4 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor"} -C3N-04382.MethArray.Red.A C3N-04382 LUAD Methylation_Array tissue_normal CPT0240680006 203561620080_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 2791aa60-ea66-4260-bc7b-db5c82124887 afa5d5d72061c6a57a7bf2e4d442021e {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.MethArray.Red.T C3N-04382 LUAD Methylation_Array tumor CPT0240670006 203561450102_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 52380e05-1165-4e98-9161-76ad610083eb 0a557e7545650c5ea5cdf68005d5ebf8 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor"} -C3N-04382.miRNA-Seq.A.hg38 C3N-04382 LUAD miRNA-Seq tissue_normal CPT0240680009 e2ada810-c2fc-401d-872d-1da25a151bf7_mirnaseq_gdc_realn.bam 217549822 BAM harmonized CPTAC3 eccd96b5-22f2-4460-a442-43874b5996db b7ea0942b234b7f37e02ec413a827319 {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.miRNA-Seq.S11_L007_R1.T C3N-04382 LUAD miRNA-Seq tumor CPT0240670009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGTCA_S11_L007_R1_001.unaln.bam 209901696 BAM S11_L007_R1 unaligned CPTAC3 dfc231e6-2717-49d4-ab55-66d28dd069df 2395a4c6ca6c63b6ccfa52122c8dbb44 {"aliquot_tag": "ALQ_afdefe18", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04382.miRNA-Seq.S30_L006_R1.A C3N-04382 LUAD miRNA-Seq tissue_normal CPT0240680009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCAACA_S30_L006_R1_001.unaln.bam 192258215 BAM S30_L006_R1 unaligned CPTAC3 06cba9fa-683a-43ba-acf8-a2df40957b3d 4cd6b554e809bc9bb7fbe5b329d3a976 {"aliquot_tag": "ALQ_2d8e69c9", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.miRNA-Seq.T.hg38 C3N-04382 LUAD miRNA-Seq tumor CPT0240670009 b9672af0-e3e2-4d29-bfb7-869e2cfd4ae8_mirnaseq_gdc_realn.bam 229685023 BAM harmonized CPTAC3 234930ac-bc75-42fb-af7c-4a1113c792be f486c0e56a4e3b9ce310b6b893035701 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor"} -C3N-04382.RNA-Seq.chimeric.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.chimeric.gdc_realn.bam 34007452 BAM chimeric harmonized CPTAC3 eee24bcb-68b8-44b6-aa12-2964f29d4b7a 1a54259ce26ad3a08edc4175bfd21d2c {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.RNA-Seq.chimeric.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.chimeric.gdc_realn.bam 35129982 BAM chimeric harmonized CPTAC3 91291122-e6c4-4304-8f47-93f6930adfb7 53b69aa8c3b28903a6da8ab213160a25 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor"} -C3N-04382.RNA-Seq.genomic.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.genomic.gdc_realn.bam 11371395291 BAM genomic harmonized CPTAC3 5c3c0d7b-772b-4a7c-8e27-57c27389a34a fb0f97980ef5f601291e60ff8f4b1c1c {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.RNA-Seq.genomic.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.genomic.gdc_realn.bam 10902825782 BAM genomic harmonized CPTAC3 451c3f20-879e-4a5b-827d-afa2a6078e26 3cfca24428bca4fb6e61740b9aabd2a7 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor"} -C3N-04382.RNA-Seq.S29_L008_R1.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R1_001.fastq.gz 4348621087 FASTQ S29_L008_R1 unaligned CPTAC3 413aaa51-c49d-4e56-a205-ec549d3edc8a 38d29d8bfd4e6f4fb6b10cef19a99d57 {"aliquot_tag": "ALQ_afdefe18", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04382.RNA-Seq.S29_L008_R2.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R2_001.fastq.gz 4813764072 FASTQ S29_L008_R2 unaligned CPTAC3 872c5cfa-f7cd-4c40-abc0-b4f395034fa7 15814f17234aa23d4fa2f05151e4dba2 {"aliquot_tag": "ALQ_afdefe18", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04382.RNA-Seq.S9_L003_R1.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4485057847 FASTQ S9_L003_R1 unaligned CPTAC3 00b5e191-d32c-4209-8035-5d23acfffb95 75f0e085dc60a16bcb2bdefbcbf35c25 {"aliquot_tag": "ALQ_2d8e69c9", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.RNA-Seq.S9_L003_R2.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4643808549 FASTQ S9_L003_R2 unaligned CPTAC3 453f8f6e-e73a-4c27-be16-4fe12ebe015c a81cdec946d036a9de0f522a955cf943 {"aliquot_tag": "ALQ_2d8e69c9", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.RNA-Seq.transcriptome.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.transcriptome.gdc_realn.bam 8922710202 BAM transcriptome harmonized CPTAC3 0a1fa6bc-b28b-421d-bf3c-d235af553b13 20c3e8151138a2518fcc37c1deeede2a {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.RNA-Seq.transcriptome.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.transcriptome.gdc_realn.bam 10945797223 BAM transcriptome harmonized CPTAC3 a6b4312a-51b8-4af8-8da8-a6f1ed6ecf3b aafd680f997f33b036fae9d6ff5325f6 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor"} -C3N-04382.WGS.N C3N-04382 LUAD WGS blood_normal CPT0241700002 CPT0241700002.WholeGenome.RP-1303.bam 63447764583 BAM aligned CPTAC3 3ed2e15b-3c20-41b4-b551-4c5f113f7974 59fa2f81925567f50896b6bf74d5705f {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal"} -C3N-04382.WGS.N.hg38 C3N-04382 LUAD WGS blood_normal CPT0241700002 88cf49b3-0b2d-4a5e-afa5-aaae77123c55_wgs_gdc_realn.bam 92048733883 BAM harmonized CPTAC3 ca3a7c80-24b2-4eef-a824-158c4f53e2af 10fd3e822356e9cfd3c5e837df83d1b3 {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal"} -C3N-04382.WGS.T C3N-04382 LUAD WGS tumor CPT0240670006 CPT0240670006.WholeGenome.RP-1303.bam 77762274116 BAM aligned CPTAC3 490a91c9-0bca-4e29-ba25-473dfac13069 ee2b4bcb8992164126ad8365f06de6f6 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor"} -C3N-04382.WGS.T.hg38 C3N-04382 LUAD WGS tumor CPT0240670006 ac407b00-f068-483f-b21e-9b5cada5daf4_wgs_gdc_realn.bam 115434713550 BAM harmonized CPTAC3 1b1f792a-6c78-41a7-be1b-b7ff70c43db3 a5e5305818199f58f00d4c66acfc06f8 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor"} -C3N-04382.WXS.A C3N-04382 LUAD WXS tissue_normal CPT0240680006 CPT0240680006.WholeExome.RP-1303.bam 25059777011 BAM aligned CPTAC3 a25be4c1-0ecc-4172-8a6d-62d55d4fb086 3e2a9c43bb296fc9b4e5b1d1e2538dec {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.WXS.A.hg38 C3N-04382 LUAD WXS tissue_normal CPT0240680006 51498849-0222-4173-8a71-651b2348d37c_wxs_gdc_realn.bam 34784568147 BAM harmonized CPTAC3 4e30bf3f-0e51-4b36-a630-27d567583e51 4fb7d60f94509e9064d29bb1df621a1f {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04382.WXS.N C3N-04382 LUAD WXS blood_normal CPT0241700002 CPT0241700002.WholeExome.RP-1303.bam 22988328303 BAM aligned CPTAC3 61f7138c-19bb-4927-8de0-c1e1b1bf7065 35cdf75b04d31304738a1dd84d65f29f {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal"} -C3N-04382.WXS.N.hg38 C3N-04382 LUAD WXS blood_normal CPT0241700002 88cf49b3-0b2d-4a5e-afa5-aaae77123c55_wxs_gdc_realn.bam 31622632166 BAM harmonized CPTAC3 b657a5d9-35ed-45fa-aef5-066449dd2031 ad4b45200fe5a12c3b2800a52137a770 {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal"} -C3N-04382.WXS.T C3N-04382 LUAD WXS tumor CPT0240670006 CPT0240670006.WholeExome.RP-1303.bam 22285616195 BAM aligned CPTAC3 b8e85332-1e12-423f-b89c-45fcf60c989c 7eb283772e51469e06f54cc368328537 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor"} -C3N-04382.WXS.T.hg38 C3N-04382 LUAD WXS tumor CPT0240670006 ac407b00-f068-483f-b21e-9b5cada5daf4_wxs_gdc_realn.bam 30412646037 BAM harmonized CPTAC3 daedaa8c-9345-4c69-89ac-1149fb350c8d 271eb566b9d3b292c77753a0a50d3bea {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor"} -C3N-04384.MethArray.Green.A C3N-04384 LSCC Methylation_Array tissue_normal CPT0331120006 204930640041_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2744a895-e718-4b38-a356-a0be390951c5 f72324518268413c9b6c37fb034cdba2 {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.MethArray.Green.T C3N-04384 LSCC Methylation_Array tumor CPT0331100007 204930630081_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7afc8639-3430-4026-875a-1e363238c4db 8cde5f346982139e3774b86a0222f846 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor"} -C3N-04384.MethArray.Red.A C3N-04384 LSCC Methylation_Array tissue_normal CPT0331120006 204930640041_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 4cf983e7-d777-4ac1-8865-bc0f592f879b 20a296763ed798a1ee957b7a888ddbed {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.MethArray.Red.T C3N-04384 LSCC Methylation_Array tumor CPT0331100007 204930630081_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 1c370303-4209-468d-b7a8-236c619b71ca fc46f6f255e4b50a9e0f0d6e4130e235 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor"} -C3N-04384.miRNA-Seq.A.hg38 C3N-04384 LSCC miRNA-Seq tissue_normal CPT0331120009 fad742ef-f6b8-4f67-a941-d673c5574b23_mirnaseq_gdc_realn.bam 338703151 BAM harmonized CPTAC3 f21a3722-0862-41db-a821-97d481ac8f4e 2563230ea0b0ab17914ade6a720d91b4 {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.miRNA-Seq.S28_L007_R1.T C3N-04384 LSCC miRNA-Seq tumor CPT0331100010 201209_UNC32-K00270_0265_AHJ55WBBXY_CCGTCC_S28_L007_R1_001.unaln.bam 270836115 BAM S28_L007_R1 unaligned CPTAC3 5238c193-62a3-4b0a-9a58-8ea6ac5426a3 b485351d70d7e25ffcfb8fa2dcf5cfe5 {"aliquot_tag": "ALQ_dbf58dbb", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04384.miRNA-Seq.S9_L006_R1.A C3N-04384 LSCC miRNA-Seq tissue_normal CPT0331120009 201209_UNC32-K00270_0265_AHJ55WBBXY_CACTCA_S9_L006_R1_001.unaln.bam 312564513 BAM S9_L006_R1 unaligned CPTAC3 03050bb5-8c8d-4d79-bcd9-e24049b495e8 acb8055863641048b3208226a2cbb43d {"aliquot_tag": "ALQ_c1f2573e", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.miRNA-Seq.T.hg38 C3N-04384 LSCC miRNA-Seq tumor CPT0331100010 0e7c356b-26f7-4382-adca-df99e755f4cb_mirnaseq_gdc_realn.bam 295928689 BAM harmonized CPTAC3 714cc74c-33ac-4d07-a082-ce26ad43bfd2 9aa277a683e8e9d863abcacc01c4fb40 {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor"} -C3N-04384.RNA-Seq.chimeric.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.chimeric.gdc_realn.bam 142193468 BAM chimeric harmonized CPTAC3 f3bfe56d-c950-4bc8-a3d1-da3fbfaee0fe 47b4f8a9c4a86361d52c9c43842ad174 {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.RNA-Seq.chimeric.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.chimeric.gdc_realn.bam 88693789 BAM chimeric harmonized CPTAC3 2fd5f7d1-2909-4f0c-a6a5-a23cd35ae95b 497510e9c300facd4c1a47d5cccd9237 {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor"} -C3N-04384.RNA-Seq.genomic.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.genomic.gdc_realn.bam 8054413168 BAM genomic harmonized CPTAC3 6ff08ff4-f786-4e93-b1e6-4161dae46b8f b4da4d210301463fb393c23807e991eb {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.RNA-Seq.genomic.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.genomic.gdc_realn.bam 6236355045 BAM genomic harmonized CPTAC3 3184f16b-cd86-41bf-bcea-e397bb169127 bc1acd1cefbe744ade064178383dab49 {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor"} -C3N-04384.RNA-Seq.S25_L007_R1.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R1_001.fastq.gz 3161150739 FASTQ S25_L007_R1 unaligned CPTAC3 2efb8b86-7963-494b-8cf8-070601581e4c 86a5337cd914c1c3d1d949e9668515f4 {"aliquot_tag": "ALQ_dbf58dbb", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04384.RNA-Seq.S25_L007_R2.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R2_001.fastq.gz 3461343173 FASTQ S25_L007_R2 unaligned CPTAC3 e5cb1010-199f-44cf-b523-6fcade44dda5 2b05c5641b920de75ee424bfd51dfe22 {"aliquot_tag": "ALQ_dbf58dbb", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04384.RNA-Seq.S2_L001_R1.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R1_001.fastq.gz 4089256863 FASTQ S2_L001_R1 unaligned CPTAC3 b2be76d3-2780-4b37-ac3d-00b8275570a3 eada057439b909e6f2b92bf272dbd2b9 {"aliquot_tag": "ALQ_c1f2573e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.RNA-Seq.S2_L001_R2.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R2_001.fastq.gz 4544440132 FASTQ S2_L001_R2 unaligned CPTAC3 54e12111-0171-43cc-bc0a-2258d1d9baa8 b35dc57faa81321f6b37ed33a7f0166c {"aliquot_tag": "ALQ_c1f2573e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.RNA-Seq.transcriptome.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.transcriptome.gdc_realn.bam 10056724903 BAM transcriptome harmonized CPTAC3 0fd86dd2-72c1-47ed-99ed-5972c813eb7e 2cefe7fe59ac22c3f5ada0b36a2ded75 {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.RNA-Seq.transcriptome.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.transcriptome.gdc_realn.bam 10790719891 BAM transcriptome harmonized CPTAC3 d11abf2c-b4a7-4a8a-bd7b-f202e3eb3f1a ac0d0ddd44bebc7af8c83f553caa183d {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor"} -C3N-04384.WGS.N C3N-04384 LSCC WGS blood_normal CPT0332110002 CPT0332110002.WholeGenome.RP-2158.bam 26808051879 BAM aligned CPTAC3 f2d7d0be-9e8e-4b4b-a101-c7ad831863e8 5ac075b829135c6c5deef4f472bd5370 {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04384.WGS.N.hg38 C3N-04384 LSCC WGS blood_normal CPT0332110002 1ea9100f-68e8-426c-8762-c3a317838e91_wgs_gdc_realn.bam 78453947533 BAM harmonized CPTAC3 ca53426a-b4f8-4919-9a13-ab0c1fb2c613 ebd91640375e411aac935ecfd31a9ca5 {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04384.WGS.T C3N-04384 LSCC WGS tumor CPT0331100007 CPT0331100007.WholeGenome.RP-2158.bam 24242977076 BAM aligned CPTAC3 d41e33d2-4f07-4464-af9e-85e6a9dfb964 1691ca01b9754b7e55fa40bc21f538b1 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor"} -C3N-04384.WGS.T.hg38 C3N-04384 LSCC WGS tumor CPT0331100007 8bf2e5ad-73d1-40ff-ac55-15bb691970af_wgs_gdc_realn.bam 73155208453 BAM harmonized CPTAC3 6e62f0a1-62b2-40a3-8b86-22116ae94408 b2525a9186b3086c5131c7240bf4c164 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor"} -C3N-04384.WXS.A C3N-04384 LSCC WXS tissue_normal CPT0331120006 CPT0331120006.WholeExome.RP-1303.bam 22577166982 BAM aligned CPTAC3 03269cbf-925c-400f-b4b9-0d456b569c63 88559a576d770747f2b69140d3bbfc15 {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.WXS.A.hg38 C3N-04384 LSCC WXS tissue_normal CPT0331120006 684c32d5-4b18-4102-aab9-bd86d7c12ee9_wxs_gdc_realn.bam 31056737452 BAM harmonized CPTAC3 d62256aa-0447-4e87-8ec1-fcdda541631a 4944a455eb841c9cd8db02c57907bace {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04384.WXS.N C3N-04384 LSCC WXS blood_normal CPT0332110002 CPT0332110002.WholeExome.RP-1303.bam 28330042483 BAM aligned CPTAC3 6d69112d-2b77-4676-b24a-4ee39790b026 b58d3d6752198bc3392b07b55edbde9c {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04384.WXS.N.hg38 C3N-04384 LSCC WXS blood_normal CPT0332110002 1ea9100f-68e8-426c-8762-c3a317838e91_wxs_gdc_realn.bam 40193987601 BAM harmonized CPTAC3 ede49932-131a-4ce5-9c2f-17c700037a0a 94afef57e150724abadb500ac593a6f3 {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal"} -C3N-04384.WXS.T C3N-04384 LSCC WXS tumor CPT0331100007 CPT0331100007.WholeExome.RP-1303.bam 35107427907 BAM aligned CPTAC3 99125eac-a48f-481c-8448-5dfe181de91e 2f0665ee17c9d7908c3f4fd2cbab4ba1 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor"} -C3N-04384.WXS.T.hg38 C3N-04384 LSCC WXS tumor CPT0331100007 8bf2e5ad-73d1-40ff-ac55-15bb691970af_wxs_gdc_realn.bam 48896116567 BAM harmonized CPTAC3 9aaf57ce-dd5b-47a3-8922-4ee36b77720a ff934258da2bb3350175d0d8b42f6933 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor"} -C3N-04445.MethArray.Green.A C3N-04445 LSCC Methylation_Array tissue_normal CPT0332540006 204930640041_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 bb1365ac-4851-4d3a-86e2-00f5f01d4546 0286a62b9872ddc8078cbae4b6dc87c7 {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.MethArray.Green.T C3N-04445 LSCC Methylation_Array tumor CPT0332520007 204930630078_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 0fcbb90b-2234-4894-85b9-6d5f0e7109bf 447098e1801d1ad88f7a1ee1e853f935 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor"} -C3N-04445.MethArray.Red.A C3N-04445 LSCC Methylation_Array tissue_normal CPT0332540006 204930640041_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 76487acd-151c-437d-99d1-4b5ffcafcfae e795c1287d22b1de902861e140c72708 {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.MethArray.Red.T C3N-04445 LSCC Methylation_Array tumor CPT0332520007 204930630078_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 6b0a6b62-70a9-4e97-9fae-d002e3c10385 bd7d6dd01a7552304d9f89a3980527b2 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor"} -C3N-04445.miRNA-Seq.A.hg38 C3N-04445 LSCC miRNA-Seq tissue_normal CPT0332540009 90ba4852-f665-4035-9ac9-074ea01ab6cc_mirnaseq_gdc_realn.bam 339224928 BAM harmonized CPTAC3 50221f14-2a74-4358-837d-334ed81737c6 ec573249ba146fa152fa2a0545530f27 {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.miRNA-Seq.S12_L006_R1.A C3N-04445 LSCC miRNA-Seq tissue_normal CPT0332540009 201209_UNC32-K00270_0265_AHJ55WBBXY_GACGAC_S12_L006_R1_001.unaln.bam 312384369 BAM S12_L006_R1 unaligned CPTAC3 30035f59-cff3-4d34-b8e8-30a025a83390 bf73105d0dad34361199d7a119e81272 {"aliquot_tag": "ALQ_e4cbfa15", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.miRNA-Seq.S34_L007_R1.T C3N-04445 LSCC miRNA-Seq tumor CPT0332520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTCCGC_S34_L007_R1_001.unaln.bam 282240822 BAM S34_L007_R1 unaligned CPTAC3 0fcbaf7f-cc5f-4ef4-9883-5dc7580149d3 2c575a96049594f54772d16d5b322652 {"aliquot_tag": "ALQ_b4c8650", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04445.miRNA-Seq.T.hg38 C3N-04445 LSCC miRNA-Seq tumor CPT0332520010 07e501ec-8f57-4271-90f0-911fea16a5fc_mirnaseq_gdc_realn.bam 305741236 BAM harmonized CPTAC3 48a371d6-30f2-4795-943c-b50bb6b71bae 352a137a119ea095ed6d19b8e8ff9c0d {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor"} -C3N-04445.RNA-Seq.chimeric.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.chimeric.gdc_realn.bam 187884085 BAM chimeric harmonized CPTAC3 0ce0f8ef-17cc-4e74-a0df-7329f240cce7 c9faa37be1c4150410214d850d0f6f7f {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.RNA-Seq.chimeric.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.chimeric.gdc_realn.bam 466483724 BAM chimeric harmonized CPTAC3 570c9972-7f81-43dc-9adb-f3f05af590d4 73b4b17d7a911829e37e798df97bd94f {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor"} -C3N-04445.RNA-Seq.genomic.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.genomic.gdc_realn.bam 6931970388 BAM genomic harmonized CPTAC3 a58d8145-8406-4812-9bf4-a3517de9e478 8b4673cca7365957f17d62044e6d2894 {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.RNA-Seq.genomic.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.genomic.gdc_realn.bam 8646989811 BAM genomic harmonized CPTAC3 1df864de-7a57-4514-b212-0f93c6d8a7cb 21d745fa5ab8a8b7ed4520bc7b58a875 {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor"} -C3N-04445.RNA-Seq.S11_L003_R1.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R1_001.fastq.gz 3367376011 FASTQ S11_L003_R1 unaligned CPTAC3 799ebf27-76fc-441b-a909-acdd6ac3b457 6d2e0eaac75bfa4fd6b207a795196551 {"aliquot_tag": "ALQ_e4cbfa15", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.RNA-Seq.S11_L003_R2.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R2_001.fastq.gz 3560512926 FASTQ S11_L003_R2 unaligned CPTAC3 2dd3b8ff-9556-4d0f-9a0d-32232c124842 bb36286628aa267a9bfa458c9bf2189a {"aliquot_tag": "ALQ_e4cbfa15", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.RNA-Seq.S22_L006_R1.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R1_001.fastq.gz 4184341827 FASTQ S22_L006_R1 unaligned CPTAC3 765a6172-1c0f-4bad-b7a8-da971e31402d c34c1bb187a1f89d0f3f0e7426004123 {"aliquot_tag": "ALQ_b4c8650", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04445.RNA-Seq.S22_L006_R2.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R2_001.fastq.gz 4696197419 FASTQ S22_L006_R2 unaligned CPTAC3 843e3841-e979-4135-b0dc-1b7f97be3091 4118d1a7d47f3e932f2e8e35afb34524 {"aliquot_tag": "ALQ_b4c8650", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04445.RNA-Seq.transcriptome.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.transcriptome.gdc_realn.bam 9768041159 BAM transcriptome harmonized CPTAC3 1922fcfa-e174-445a-9cf8-02fea26c2885 8bba9aae18528b6ccdcf6ed23e5430cb {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.RNA-Seq.transcriptome.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.transcriptome.gdc_realn.bam 10537913755 BAM transcriptome harmonized CPTAC3 a7a05d37-db91-4199-9966-e27a4f28c2cb e4b6b29074cab75cdcd2c3473cc3d001 {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor"} -C3N-04445.WGS.N C3N-04445 LSCC WGS blood_normal CPT0332610002 CPT0332610002.WholeGenome.RP-2158.bam 25594571712 BAM aligned CPTAC3 90cc388f-ca4b-4602-a62c-b307b6360204 a37a6c7948ce33d42067a3c5e8c0d883 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal"} -C3N-04445.WGS.N.hg38 C3N-04445 LSCC WGS blood_normal CPT0332610002 8a821d56-7c74-4f7a-95ee-471dc379af7e_wgs_gdc_realn.bam 79378403146 BAM harmonized CPTAC3 b45fb418-a93c-4bc5-a0e5-552665c85f13 6ce9132cb22e6827add7765879d79867 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal"} -C3N-04445.WGS.T C3N-04445 LSCC WGS tumor CPT0332520007 CPT0332520007.WholeGenome.RP-2158.bam 24290785613 BAM aligned CPTAC3 be2e7d9f-666e-440a-a149-803b96dddea3 8e8b53714a0be8143ce55baf1c8589af {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor"} -C3N-04445.WGS.T.hg38 C3N-04445 LSCC WGS tumor CPT0332520007 54af6878-ed0d-408c-b19d-16e2eb81b0fb_wgs_gdc_realn.bam 74235777348 BAM harmonized CPTAC3 c98dbadb-01ab-4823-b588-e879f233db55 1fa9bbb6de1146551c4c958fe76b6323 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor"} -C3N-04445.WXS.A C3N-04445 LSCC WXS tissue_normal CPT0332540006 CPT0332540006.WholeExome.RP-1303.bam 24171857056 BAM aligned CPTAC3 a1158d75-1498-4464-a73d-2a70122effce 2ab357d0e2caa3ddeb9411059796be00 {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.WXS.A.hg38 C3N-04445 LSCC WXS tissue_normal CPT0332540006 624a201b-bc52-491c-aa5d-5f86bd47f8f5_wxs_gdc_realn.bam 32465668539 BAM harmonized CPTAC3 7d528d92-3ab2-4ae6-839e-8e9826bfae17 552a242b6124b9d51afd37803e66e23f {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04445.WXS.N C3N-04445 LSCC WXS blood_normal CPT0332610002 CPT0332610002.WholeExome.RP-1303.bam 20906100037 BAM aligned CPTAC3 07a9d01a-0596-43cd-8e67-ce8e2e556c82 c2deb0e28245b29da4aea93ba4c8ee24 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal"} -C3N-04445.WXS.N.hg38 C3N-04445 LSCC WXS blood_normal CPT0332610002 8a821d56-7c74-4f7a-95ee-471dc379af7e_wxs_gdc_realn.bam 28158754966 BAM harmonized CPTAC3 97e07297-be3d-4dfb-ae09-c98465a70650 b53804ad37b719e0780ad6cda7ef6669 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal"} -C3N-04445.WXS.T C3N-04445 LSCC WXS tumor CPT0332520007 CPT0332520007.WholeExome.RP-1303.bam 23009029138 BAM aligned CPTAC3 0fcec14e-e542-4457-a293-c1362302aef5 bd0a42d6b1fd1615e10ce189f411e855 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor"} -C3N-04445.WXS.T.hg38 C3N-04445 LSCC WXS tumor CPT0332520007 54af6878-ed0d-408c-b19d-16e2eb81b0fb_wxs_gdc_realn.bam 32169217638 BAM harmonized CPTAC3 21c14ad8-245f-4921-a484-fad3185e3999 b08916c8e91924777e29e9356b7653f5 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor"} -C3N-04449.MethArray.Green.A C3N-04449 LSCC Methylation_Array tissue_normal CPT0332740006 204930630086_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 8ad31772-70c3-49d4-aa74-ca38c36d3911 7f9e0765b510265add82dcf94dde89d7 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.MethArray.Green.T C3N-04449 LSCC Methylation_Array tumor CPT0332720007 204930630114_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 02eb6162-1022-4799-8720-c394ffa1ef1b 3f6f08260e840aac92761a59b3a82741 {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor"} -C3N-04449.MethArray.Red.A C3N-04449 LSCC Methylation_Array tissue_normal CPT0332740006 204930630086_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 bdd1f272-1314-4eee-bb79-ff5a93d2dfee 9598d3d422ba6eb34407dbd6b80eeb99 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.MethArray.Red.T C3N-04449 LSCC Methylation_Array tumor CPT0332720007 204930630114_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 1fdb9ba8-fb24-4848-bb74-94303426fa4c fed7e7a1d010dfdec2e0146cf98ae077 {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor"} -C3N-04449.miRNA-Seq.A.hg38 C3N-04449 LSCC miRNA-Seq tissue_normal CPT0332740009 3b56e75a-a0b1-4ea7-9fcb-e9a2d57a3390_mirnaseq_gdc_realn.bam 291715755 BAM harmonized CPTAC3 ac1a46f3-2103-41ad-8afa-b8be369b81d0 8a2195dab8fb8076a06ce99afba2f44f {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.miRNA-Seq.S15_L006_R1.A C3N-04449 LSCC miRNA-Seq tissue_normal CPT0332740009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAATCG_S15_L006_R1_001.unaln.bam 269694284 BAM S15_L006_R1 unaligned CPTAC3 c60afc88-17dd-435a-bdd5-8ba29a39d31d 3c4f86006ee55496fb02135a91994736 {"aliquot_tag": "ALQ_a9035b1e", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.miRNA-Seq.S35_L007_R1.T C3N-04449 LSCC miRNA-Seq tumor CPT0332720010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGAAA_S35_L007_R1_001.unaln.bam 268242791 BAM S35_L007_R1 unaligned CPTAC3 1fe4b221-de07-4a90-b9ec-d752c14c05c5 89c6febd3e39cd1539e2bb92b22975df {"aliquot_tag": "ALQ_4684275b", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04449.miRNA-Seq.T.hg38 C3N-04449 LSCC miRNA-Seq tumor CPT0332720010 fa41f2d5-16a2-48bd-8c0f-005d198afe31_mirnaseq_gdc_realn.bam 297093426 BAM harmonized CPTAC3 472e8c5a-069a-4c5e-8c51-db8b7d2eaf84 59d381fa87275676c434824ef10932bf {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor"} -C3N-04449.RNA-Seq.chimeric.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.chimeric.gdc_realn.bam 253683544 BAM chimeric harmonized CPTAC3 02b37543-b80f-4ee4-b0e5-6a8ef479cdc4 cc12e51f36099409a4894a4fb9732e27 {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.RNA-Seq.chimeric.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.chimeric.gdc_realn.bam 449454651 BAM chimeric harmonized CPTAC3 72a36d7b-acde-41be-a263-112ad2d3e1a1 435c565e91b7129f023697957f427a56 {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor"} -C3N-04449.RNA-Seq.genomic.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.genomic.gdc_realn.bam 9550268902 BAM genomic harmonized CPTAC3 f1239973-435f-4634-9eba-50263a4c321c 0ca69dbf4a5a4aa7a5a5f9bdd0d8005a {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.RNA-Seq.genomic.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.genomic.gdc_realn.bam 7704178222 BAM genomic harmonized CPTAC3 6f58e790-fdf0-4020-b1f3-375748636382 076795197cb623eaa3a37e29e20c2b47 {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor"} -C3N-04449.RNA-Seq.S21_L006_R1.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R1_001.fastq.gz 3838291981 FASTQ S21_L006_R1 unaligned CPTAC3 c10721f5-e95f-40de-8b5d-908d955cead2 4fb04572c6568299728933bdf9eea9fd {"aliquot_tag": "ALQ_4684275b", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04449.RNA-Seq.S21_L006_R2.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R2_001.fastq.gz 4245083460 FASTQ S21_L006_R2 unaligned CPTAC3 1c1d820c-2e0a-449d-8d17-d6c10f2f732b 41be9a98fed6d4fdb7f44a3fed019329 {"aliquot_tag": "ALQ_4684275b", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04449.RNA-Seq.S9_L003_R1.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R1_001.fastq.gz 4691535789 FASTQ S9_L003_R1 unaligned CPTAC3 a9eddd7c-e293-40f3-9bdc-ffe657565d83 5baa4bf04d9b48579ff426c04b58273b {"aliquot_tag": "ALQ_a9035b1e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.RNA-Seq.S9_L003_R2.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R2_001.fastq.gz 4910314542 FASTQ S9_L003_R2 unaligned CPTAC3 b04a1909-634a-4fce-8ed4-9224e26ccbda f4da99cbea5205f9f854f342319c4487 {"aliquot_tag": "ALQ_a9035b1e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.RNA-Seq.transcriptome.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.transcriptome.gdc_realn.bam 12770362025 BAM transcriptome harmonized CPTAC3 d4f58cf8-9a5c-44d0-8665-e62b05eedf25 50ca9c31815fae8b55c362d9814612d6 {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.RNA-Seq.transcriptome.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.transcriptome.gdc_realn.bam 11444686392 BAM transcriptome harmonized CPTAC3 6e2cd636-3fce-4001-aedc-a59a3a016d29 28848f89d0a5fa4270111bfca9d81ed5 {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor"} -C3N-04449.WGS.N C3N-04449 LSCC WGS blood_normal CPT0332810002 CPT0332810002.WholeGenome.RP-2158.bam 30070111755 BAM aligned CPTAC3 ce8a6ac8-7c3f-454e-848e-326805f4d3ee ecdba8c3304b730fea4e2c8f4f5a659c {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal"} -C3N-04449.WGS.N.hg38 C3N-04449 LSCC WGS blood_normal CPT0332810002 bd038019-338b-4341-b111-d76b682045c5_wgs_gdc_realn.bam 94230223745 BAM harmonized CPTAC3 c5d44044-34bb-4ca1-beb1-299a24a41cff c46ae39b85002ca20d890044c8b99f88 {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal"} -C3N-04449.WGS.T C3N-04449 LSCC WGS tumor CPT0332720007 CPT0332720007.WholeGenome.RP-2158.bam 25102344713 BAM aligned CPTAC3 f8ac2ef3-76ea-4c5b-9a94-6cb3fed3911d ade87a169eb9b5d4b732d42a70ff284e {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor"} -C3N-04449.WGS.T.hg38 C3N-04449 LSCC WGS tumor CPT0332720007 c3a426ad-41bd-46ac-9b5d-5ec8534d4ef3_wgs_gdc_realn.bam 72195400274 BAM harmonized CPTAC3 b4048d13-1d6b-4844-9982-480a40ccb831 09a5b0f05249765cdc1495859102bd3f {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor"} -C3N-04449.WXS.A C3N-04449 LSCC WXS tissue_normal CPT0332740006 CPT0332740006.WholeExome.RP-1303.bam 36413072593 BAM aligned CPTAC3 37217e58-6f6e-41b0-bf22-e64d15a5dda7 bdb5ceb6cce98eedd9396e01e757c241 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.WXS.A.hg38 C3N-04449 LSCC WXS tissue_normal CPT0332740006 2486362f-a1a8-4a12-afc9-aa0267e8267a_wxs_gdc_realn.bam 50036075363 BAM harmonized CPTAC3 82acd8c7-337d-47d0-b788-107513782d22 7741d64099774b800c2d190c5602f442 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04449.WXS.N C3N-04449 LSCC WXS blood_normal CPT0332810002 CPT0332810002.WholeExome.RP-1303.bam 25275331083 BAM aligned CPTAC3 d330fc75-e016-4ed1-95fa-9594f1facfae 2e36f0c92c7a523d198263265b834fdc {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal"} -C3N-04449.WXS.N.hg38 C3N-04449 LSCC WXS blood_normal CPT0332810002 bd038019-338b-4341-b111-d76b682045c5_wxs_gdc_realn.bam 34391597060 BAM harmonized CPTAC3 6b486ca4-b2dc-42ba-a2b9-4e5c4d2b9ebb a9cab4bd986d3e8381276b1375969143 {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal"} -C3N-04449.WXS.T C3N-04449 LSCC WXS tumor CPT0332720007 CPT0332720007.WholeExome.RP-1303.bam 26830898453 BAM aligned CPTAC3 3c5e6c14-4d8b-4cc1-8a22-b4ef004a97ac 4e1617236ab21a649030c2edfd4b7c5a {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor"} -C3N-04449.WXS.T.hg38 C3N-04449 LSCC WXS tumor CPT0332720007 c3a426ad-41bd-46ac-9b5d-5ec8534d4ef3_wxs_gdc_realn.bam 37025014593 BAM harmonized CPTAC3 49444f7c-e571-4563-ae5f-8c675f26a63f 1bcd7cfa611f209b3247494e2bba38ab {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor"} -C3N-04457.MethArray.Green.A C3N-04457 LSCC Methylation_Array tissue_normal CPT0260800006 204372030074_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4687fb39-5b71-4798-bb88-d403e25fd674 5fbeeffad40d6f8925220d4d3bc4db07 {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.MethArray.Green.T C3N-04457 LSCC Methylation_Array tumor CPT0259530006 204367490090_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 98e7aa2b-fee5-48f0-83f5-b93d74303fb7 4ba54892b0c32ccd6b13cf05305bde8d {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor"} -C3N-04457.MethArray.Red.A C3N-04457 LSCC Methylation_Array tissue_normal CPT0260800006 204372030074_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 ed21dc13-4f36-4204-9a52-fa517f1080c3 d090203bb8de4f18574d15f0b823d417 {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.MethArray.Red.T C3N-04457 LSCC Methylation_Array tumor CPT0259530006 204367490090_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 932a97b3-c545-4fc8-8e1d-bc188a51733b 70f9c7cf0b9d03c232d6924849889b17 {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor"} -C3N-04457.miRNA-Seq.A.hg38 C3N-04457 LSCC miRNA-Seq tissue_normal CPT0260800009 d2a4bcf5-ead1-4fa4-aae1-e0aa0aa35535_mirnaseq_gdc_realn.bam 287817777 BAM harmonized CPTAC3 bcf61519-0bed-4b7c-b409-7067bd5533ea b192ea56d05a9c8b493caba28ebc90dd {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.miRNA-Seq.S11_L007_R1.A C3N-04457 LSCC miRNA-Seq tissue_normal CPT0260800009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTTGTA_S11_L007_R1_001.unaln.bam 259106673 BAM S11_L007_R1 unaligned CPTAC3 71b321de-f02c-4a48-9d6f-631a6faf617e a75d8ff9286943d55912c3cf3487992a {"aliquot_tag": "ALQ_65d14405", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.miRNA-Seq.S12_L006_R1.T C3N-04457 LSCC miRNA-Seq tumor CPT0259530009 200224_UNC31-K00269_0267_AHC722BBXY_CTTGTA_S12_L006_R1_001.unaln.bam 215997748 BAM S12_L006_R1 unaligned CPTAC3 7b219143-5964-40ed-9049-d656a163dc6e dbbdba059fd3a6d3406289b12e5c718e {"aliquot_tag": "ALQ_85f86f3b", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04457.miRNA-Seq.T.hg38 C3N-04457 LSCC miRNA-Seq tumor CPT0259530009 c639be6a-5009-4d92-b78f-2e57b12894c7_mirnaseq_gdc_realn.bam 251350569 BAM harmonized CPTAC3 ad4b750d-512f-4edc-ab4e-2a0c318ea16e 34e712d7d527eb1e361ddefb2c957718 {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor"} -C3N-04457.RNA-Seq.chimeric.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.chimeric.gdc_realn.bam 98688423 BAM chimeric harmonized CPTAC3 ae829ef1-0e16-417e-8439-12bfc4123541 9d977a9610e8ada55d45f0d8562660af {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.RNA-Seq.chimeric.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.chimeric.gdc_realn.bam 73088075 BAM chimeric harmonized CPTAC3 744890ea-d5a1-4da6-b597-8e06182ea7f2 ee5e82c1278ccb5b691bf9584cf459fe {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor"} -C3N-04457.RNA-Seq.genomic.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.genomic.gdc_realn.bam 6890794108 BAM genomic harmonized CPTAC3 5e3ced65-f207-4639-bbee-40d84638a17a 10dc4b8a0e75120f4858e2db9001ec92 {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.RNA-Seq.genomic.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.genomic.gdc_realn.bam 7889453832 BAM genomic harmonized CPTAC3 19b5ff75-4865-42e5-912a-6401c1112817 cdd77adc40b241cc9d74debb54b0f0e8 {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor"} -C3N-04457.RNA-Seq.S28_L007_R1.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R1_001.fastq.gz 3961330401 FASTQ S28_L007_R1 unaligned CPTAC3 898b5235-d088-45e4-8efe-ba6402926ccd b3569ec2f3ca6144b08de16ccfc0057b {"aliquot_tag": "ALQ_85f86f3b", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04457.RNA-Seq.S28_L007_R2.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R2_001.fastq.gz 4195125717 FASTQ S28_L007_R2 unaligned CPTAC3 57a6f36d-d47f-489a-a05e-1067ecc7d2c3 c3b506a288be10f4ac582eff779e7942 {"aliquot_tag": "ALQ_85f86f3b", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04457.RNA-Seq.S9_L003_R1.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R1_001.fastq.gz 3326306536 FASTQ S9_L003_R1 unaligned CPTAC3 df26ed72-b1f1-4914-9c11-eb8480bf930e 57cdb3668f9a5301f02b6aff8289da54 {"aliquot_tag": "ALQ_65d14405", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.RNA-Seq.S9_L003_R2.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R2_001.fastq.gz 3699273678 FASTQ S9_L003_R2 unaligned CPTAC3 563583e0-0013-45cd-b118-b3647d97e36c 932f4be16365aec5b7b84a9e3b860dbb {"aliquot_tag": "ALQ_65d14405", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.RNA-Seq.transcriptome.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.transcriptome.gdc_realn.bam 8200530140 BAM transcriptome harmonized CPTAC3 e2710b9c-4889-48fd-a08d-c54c7d4dfc14 15dcedecd0b826099c51764dbc26cd74 {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.RNA-Seq.transcriptome.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.transcriptome.gdc_realn.bam 11495069316 BAM transcriptome harmonized CPTAC3 039bd586-d07f-4587-ba46-147da4059117 6f3dc02aa1df4aff3dfa8d5e1acd564c {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor"} -C3N-04457.WGS.N C3N-04457 LSCC WGS blood_normal CPT0260890002 CPT0260890002.WholeGenome.RP-2158.bam 22722416510 BAM aligned CPTAC3 d476de98-3d45-4779-b4dc-106df9fc41d2 89135bf228e5d3a0f8210ab41c8674cd {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04457.WGS.N.hg38 C3N-04457 LSCC WGS blood_normal CPT0260890002 0f0cf4d8-bb22-4f10-a486-5277dc30f309_wgs_gdc_realn.bam 67836384995 BAM harmonized CPTAC3 0fbcbb37-b611-468e-bd5a-ffa8a2c24894 ae1f46c1a4978752655934dab3088db3 {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04457.WGS.T C3N-04457 LSCC WGS tumor CPT0259530006 CPT0259530006.WholeGenome.RP-2158.bam 26804357960 BAM aligned CPTAC3 bc9cbbde-681f-4653-9ee8-535cae46babc a81b63d713cd2f7253b5a1ca1a415dcb {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor"} -C3N-04457.WGS.T.hg38 C3N-04457 LSCC WGS tumor CPT0259530006 54c6972a-c420-4047-87bc-ed4566f36a28_wgs_gdc_realn.bam 81098989280 BAM harmonized CPTAC3 1832e3d6-cc03-4573-9524-0d738f7a7c48 8265eedae45fb44000f093a2452fae01 {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor"} -C3N-04457.WXS.A C3N-04457 LSCC WXS tissue_normal CPT0260800006 CPT0260800006.WholeExome.RP-1303.bam 25612854584 BAM aligned CPTAC3 c5894f75-9dd0-4150-aa57-ce943642dbd8 aee1be2e5d003ab73f37e51fc85e17ed {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.WXS.A.hg38 C3N-04457 LSCC WXS tissue_normal CPT0260800006 af265c88-1bd1-4de4-8148-732544f8d654_wxs_gdc_realn.bam 35175355771 BAM harmonized CPTAC3 ba750cd3-21ae-4c23-afd3-2ac77b1c7360 d048ebe4f610b130a255098ad9c08f3d {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04457.WXS.N C3N-04457 LSCC WXS blood_normal CPT0260890002 CPT0260890002.WholeExome.RP-1303.bam 25601192662 BAM aligned CPTAC3 48ac4e78-51f0-4ba9-9232-8468d3d4c1d3 ef74fbc91c92ead4093578ce2c510603 {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04457.WXS.N.hg38 C3N-04457 LSCC WXS blood_normal CPT0260890002 0f0cf4d8-bb22-4f10-a486-5277dc30f309_wxs_gdc_realn.bam 34412972934 BAM harmonized CPTAC3 ae5235ba-ef3e-44c4-9e94-defa1cdb90cf b45a2429efd1858e79bfafea3386c422 {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04457.WXS.T C3N-04457 LSCC WXS tumor CPT0259530006 CPT0259530006.WholeExome.RP-1303.bam 48860848917 BAM aligned CPTAC3 bf08a1fe-45ae-40bf-8ebf-e51316111b19 538c3f76f4c5db4ccde3464e87c24a45 {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor"} -C3N-04457.WXS.T.hg38 C3N-04457 LSCC WXS tumor CPT0259530006 54c6972a-c420-4047-87bc-ed4566f36a28_wxs_gdc_realn.bam 66931968110 BAM harmonized CPTAC3 c96ca016-ada7-433f-9879-d535410a8b32 f6d24a5e7889dd09860a5b6f0f82afbb {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor"} -C3N-04609.MethArray.Green.A C3N-04609 LSCC Methylation_Array tissue_normal CPT0261370005 204367470132_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 a26b7f92-262c-43e9-9648-98b95b68600b 5192bf0a203d483a4d68fcfd8b209faa {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.MethArray.Green.T C3N-04609 LSCC Methylation_Array tumor CPT0261340006 204372030164_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2e9864a4-1838-4099-93ed-7dbe8f1cfbf0 520324062d73e260e3923d820362f31d {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor"} -C3N-04609.MethArray.Red.A C3N-04609 LSCC Methylation_Array tissue_normal CPT0261370005 204367470132_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 3f643a8c-4905-48c0-822f-ac3acd937ea2 e458de527ff8e41155153b8ca1a9d210 {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.MethArray.Red.T C3N-04609 LSCC Methylation_Array tumor CPT0261340006 204372030164_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 07254326-2a17-4d1b-b8f7-ae256bcdb3a7 f806b876dde91b05667a8160dd431816 {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor"} -C3N-04609.miRNA-Seq.A.hg38 C3N-04609 LSCC miRNA-Seq tissue_normal CPT0261370008 235a0352-a0b2-456e-95f2-7390ddb349d4_mirnaseq_gdc_realn.bam 247973059 BAM harmonized CPTAC3 9fee42d0-3240-4c38-af8b-c8b1c26f5eca 005ad79879245b35c2edd676cb98bf99 {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.miRNA-Seq.S20_L007_R1.T C3N-04609 LSCC miRNA-Seq tumor CPT0261340013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGGCC_S20_L007_R1_001.unaln.bam 248674397 BAM S20_L007_R1 unaligned CPTAC3 71eec4ad-17eb-4c09-8273-6a55a9e597da 3cc8a3ce2bc51ac887b3ee6afbca93b4 {"aliquot_tag": "ALQ_a52fc1ed", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04609.miRNA-Seq.S3_L007_R1.A C3N-04609 LSCC miRNA-Seq tissue_normal CPT0261370008 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTCAA_S3_L007_R1_001.unaln.bam 222568926 BAM S3_L007_R1 unaligned CPTAC3 2269b426-f76d-4c4b-92c1-7d4885ed1619 490ca374bbdc4d3c4f3f00f84db2db62 {"aliquot_tag": "ALQ_6c4653f4", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.miRNA-Seq.T.hg38 C3N-04609 LSCC miRNA-Seq tumor CPT0261340013 06cea557-a625-4731-8a18-b619aa9934ee_mirnaseq_gdc_realn.bam 284213287 BAM harmonized CPTAC3 3bc28b79-e066-4b4c-9a90-640e29cfba46 81fef8f04593a5310e1931ab7277a10f {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor"} -C3N-04609.RNA-Seq.chimeric.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.chimeric.gdc_realn.bam 100244173 BAM chimeric harmonized CPTAC3 e9095320-324f-4cd1-a631-4f2bd4cde944 4250e82f8114b1954ad6d3b95825a31b {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.RNA-Seq.chimeric.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.chimeric.gdc_realn.bam 145338376 BAM chimeric harmonized CPTAC3 b35ab5bf-8c69-48a8-91f9-b42b3215d62c e60846dca205293aa09a355bc9596c92 {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor"} -C3N-04609.RNA-Seq.genomic.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.genomic.gdc_realn.bam 7696537226 BAM genomic harmonized CPTAC3 57df5867-4a6f-47eb-9217-bb442795c9c4 cc2fe293ecac3dbb12f0ca8d4ef4ccc4 {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.RNA-Seq.genomic.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.genomic.gdc_realn.bam 7333750961 BAM genomic harmonized CPTAC3 7d990998-e227-40e3-99d6-0a29d26423da 16c7465a1bb794f21e441926e33ac030 {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor"} -C3N-04609.RNA-Seq.S14_L004_R1.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R1_001.fastq.gz 3732982453 FASTQ S14_L004_R1 unaligned CPTAC3 ce4b672d-2986-4efd-8b6d-86426216b967 6bf08b364fc611a2bdb675b0c05fa2d0 {"aliquot_tag": "ALQ_6c4653f4", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.RNA-Seq.S14_L004_R2.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R2_001.fastq.gz 4210861214 FASTQ S14_L004_R2 unaligned CPTAC3 f5303b74-aadb-4250-b358-5c3d17ff55d6 3d9237e82a479d1b8d3e0dd53fd5f861 {"aliquot_tag": "ALQ_6c4653f4", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.RNA-Seq.S18_L005_R1.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R1_001.fastq.gz 3478636597 FASTQ S18_L005_R1 unaligned CPTAC3 b52cfbeb-ce98-48a7-846c-1a2ff673ab54 6b0162b209f91ac0d79cb9186062a5b3 {"aliquot_tag": "ALQ_a52fc1ed", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04609.RNA-Seq.S18_L005_R2.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R2_001.fastq.gz 3987460969 FASTQ S18_L005_R2 unaligned CPTAC3 7f1a4de6-bc03-4692-a9f8-34013cafe9c4 6ba9759f70b3e4c02b4e329e6fadef84 {"aliquot_tag": "ALQ_a52fc1ed", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04609.RNA-Seq.transcriptome.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.transcriptome.gdc_realn.bam 9850449084 BAM transcriptome harmonized CPTAC3 873a48a5-b8bb-47e5-abd7-c619e3322eec 93700f8248e0ed11a90bb6d666f1f17a {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.RNA-Seq.transcriptome.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.transcriptome.gdc_realn.bam 10487858821 BAM transcriptome harmonized CPTAC3 d62e666d-d736-4e51-9b60-8327272333a6 63e097771729b64ce6482d0f8644f334 {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor"} -C3N-04609.WGS.N C3N-04609 LSCC WGS blood_normal CPT0261460002 CPT0261460002.WholeGenome.RP-2158.bam 20516376113 BAM aligned CPTAC3 99a29d84-e542-46e3-9b4c-7fad31274873 b8688214ae6c19834cb8cc2644105e15 {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04609.WGS.N.hg38 C3N-04609 LSCC WGS blood_normal CPT0261460002 d2aedfb1-8888-46fa-b2a6-ed9137cf7761_wgs_gdc_realn.bam 61426023203 BAM harmonized CPTAC3 ec37fbbc-6add-431e-813d-367d21742608 e1e5dd18467951818360e477849d5b6e {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04609.WGS.T C3N-04609 LSCC WGS tumor CPT0261340006 CPT0261340006.WholeGenome.RP-2158.bam 26715338323 BAM aligned CPTAC3 1a065183-b1a7-4217-9868-8d9609052dcc c9f774ef88c4570b1a8b2f9f986fbfdc {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor"} -C3N-04609.WGS.T.hg38 C3N-04609 LSCC WGS tumor CPT0261340006 daf0041e-8cbb-47d7-af99-edc911331d31_wgs_gdc_realn.bam 81346735687 BAM harmonized CPTAC3 1c4ef9fd-f19e-4a53-83e8-b1f50688373d 0c8f30320fa21666f218a1e06a857f44 {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor"} -C3N-04609.WXS.A C3N-04609 LSCC WXS tissue_normal CPT0261370005 CPT0261370005.WholeExome.RP-1303.bam 26723176789 BAM aligned CPTAC3 4084b28e-b032-4b6e-bc90-d4cdf25efdb6 27c799c43db0c70180ead0c7f7951255 {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.WXS.A.hg38 C3N-04609 LSCC WXS tissue_normal CPT0261370005 ceeb7e4c-5c16-48ee-81a5-6798b15370d3_wxs_gdc_realn.bam 37032542799 BAM harmonized CPTAC3 69664a42-282d-45db-a4f6-942c6b73affb e3aa0a86df069e6a728b5b4af5eb3264 {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04609.WXS.N C3N-04609 LSCC WXS blood_normal CPT0261460002 CPT0261460002.WholeExome.RP-1303.bam 22877534719 BAM aligned CPTAC3 bd043c7a-9ebb-411b-ba1a-5a8a0033eb01 c373851ceafb0e63cf0a9d0096747d64 {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04609.WXS.N.hg38 C3N-04609 LSCC WXS blood_normal CPT0261460002 d2aedfb1-8888-46fa-b2a6-ed9137cf7761_wxs_gdc_realn.bam 30934605434 BAM harmonized CPTAC3 142d485d-1d0c-455c-bbb8-d3aaabcf595d f033876aaac891637d84217d69cf825a {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal"} -C3N-04609.WXS.T C3N-04609 LSCC WXS tumor CPT0261340006 CPT0261340006.WholeExome.RP-1303.bam 46586664015 BAM aligned CPTAC3 4df22dd4-2a05-42d5-b290-01e3b0f2e8f0 a67642c31abd1eda626ac96b2b8cad95 {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor"} -C3N-04609.WXS.T.hg38 C3N-04609 LSCC WXS tumor CPT0261340006 daf0041e-8cbb-47d7-af99-edc911331d31_wxs_gdc_realn.bam 63361182951 BAM harmonized CPTAC3 3ff3963c-6fb9-4cd5-bb1c-29d8c2ceeedc 0551e1d9ad0271856753113a9ea19b2f {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor"} -C3N-04611.MethArray.Green.A C3N-04611 HNSCC Methylation_Array tissue_normal CPT0261550006 203273200110_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c9648bdd-17de-41a2-8bc7-ead15966e086 f90e35c0844adb1e85bc5c467b1c15b4 {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.MethArray.Green.T C3N-04611 HNSCC Methylation_Array tumor CPT0261520006 203271750083_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 31bf25a8-c0dd-4425-acda-c9ff72ec3647 fc736b7d631555ccd733ce190b7725e1 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor"} -C3N-04611.MethArray.Red.A C3N-04611 HNSCC Methylation_Array tissue_normal CPT0261550006 203273200110_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 c6ccd970-be33-4449-bf68-51dba9f4e90e 17d660bc04af9ef835ae654690eeb943 {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.MethArray.Red.T C3N-04611 HNSCC Methylation_Array tumor CPT0261520006 203271750083_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 23f081e0-04c7-42d0-8608-1d1d32a572eb 9bd4fe8510c1cff95bde56a487fbb83e {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor"} -C3N-04611.miRNA-Seq.A.hg38 C3N-04611 HNSCC miRNA-Seq tissue_normal CPT0261550009 781988bb-c233-475a-83fc-5514284ddeb8_mirnaseq_gdc_realn.bam 360209775 BAM harmonized CPTAC3 adf0efbf-692a-4d73-b30e-245ed29dec24 9ab55fe87dd22739277de1d999d9f3dc {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.miRNA-Seq.S41_L006_R1.T C3N-04611 HNSCC miRNA-Seq tumor CPT0261520009 190228_UNC32-K00270_0151_AHYLY3BBXX_GACGAC_S41_L006_R1_001.unaln.bam 248010262 BAM S41_L006_R1 unaligned CPTAC3 2ca07f9e-fb73-46a2-a7cb-736c4ec6b8f2 389a82c336c7b69c7ecd9f32af5ab814 {"aliquot_tag": "ALQ_5f80f0f", "sample": "S41", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04611.miRNA-Seq.S4_L007_R1.A C3N-04611 HNSCC miRNA-Seq tissue_normal CPT0261550009 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L007_R1_001.unaln.bam 320765190 BAM S4_L007_R1 unaligned CPTAC3 b2a136aa-1e20-4384-8781-b64f93a215f4 283871a93a52efe46bc3db261e3b03ab {"aliquot_tag": "ALQ_b7d8d31f", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.miRNA-Seq.T.hg38 C3N-04611 HNSCC miRNA-Seq tumor CPT0261520009 6c5b146f-e3bf-426e-9dac-3a9417aea65c_mirnaseq_gdc_realn.bam 276042224 BAM harmonized CPTAC3 4b6da654-a4ff-4966-aad4-3d6ed09bc85e 6af838857a4605525ac0267ba21075b0 {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.chimeric.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.chimeric.gdc_realn.bam 26289525 BAM chimeric harmonized CPTAC3 36778899-38ab-407e-b946-5031f9015e6d 5e27e119d1c9f626a76ddddf75459d78 {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.chimeric.gdc_realn.bam 32126651 BAM chimeric harmonized CPTAC3 a41eb75a-7143-4a7b-afca-f4206bcec6c2 8ecbfdba3043818b824c16916b43486e {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.chimeric.gdc_realn.bam 181488207 BAM chimeric harmonized CPTAC3 97e13161-f66f-4e21-8bb2-41eeacd4838d 7bde389272e903c6a7bce25366a65265 {"aliquot_tag": "ALQ_e7b810bc", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.chimeric.gdc_realn.bam 145200515 BAM chimeric harmonized CPTAC3 5cae3303-9e2a-48df-b757-b99136ff8e30 a00e7adaa7f280bd71f0f5fc3dd6f8ef {"aliquot_tag": "ALQ_9b67190", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.genomic.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.genomic.gdc_realn.bam 7216776524 BAM genomic harmonized CPTAC3 9b370ce7-5c17-4274-8636-4a2cf2007ab4 e360d63a2c1d82e746805e7b7fb30f27 {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.genomic.gdc_realn.bam 8449222301 BAM genomic harmonized CPTAC3 bc536368-0520-4089-a4cb-ad5f9afd5093 03bd0208df4944162e4418d426759447 {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.genomic.gdc_realn.bam 11351270900 BAM genomic harmonized CPTAC3 330a6b8b-4f3c-4607-a958-4c0fadd2edf5 1e3053ebe04eba10a88f958d71760ab9 {"aliquot_tag": "ALQ_e7b810bc", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.genomic.gdc_realn.bam 7551235008 BAM genomic harmonized CPTAC3 680f8b66-54bf-4649-97dd-55ba2dcfb17d 1935865b022e7b3ce3b67e9be64244e3 {"aliquot_tag": "ALQ_9b67190", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.S19_L005_R1.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R1_001.fastq.gz 3953220535 FASTQ S19_L005_R1 unaligned CPTAC3 f2c5478b-00ef-43ec-918c-5900238c2537 2a1fb30b226db4b83f463047ee90dc2e {"aliquot_tag": "ALQ_5f80f0f", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.S19_L005_R2.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R2_001.fastq.gz 4420408338 FASTQ S19_L005_R2 unaligned CPTAC3 85606e14-df05-44d8-8a65-c208cfb10b9a 8495c3024955313141a6e2701855ecc5 {"aliquot_tag": "ALQ_5f80f0f", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.S1_R1.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R1_001.fastq.gz 5609407969 FASTQ S1_R1 unaligned CPTAC3 bf0a1f26-a232-4ec6-9ac7-199bdf589b02 90fabcd9748accafae93b1c3fc25c51d {"aliquot_tag": "ALQ_e7b810bc", "sample": "S1", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.S1_R2.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R2_001.fastq.gz 5811772273 FASTQ S1_R2 unaligned CPTAC3 ddd5fbf3-0e37-413c-863f-04bc8c661076 aca0a0a60cd9eb75aa705be4f352de5f {"aliquot_tag": "ALQ_e7b810bc", "sample": "S1", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.S43_L008_R1.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R1_001.fastq.gz 3576223355 FASTQ S43_L008_R1 unaligned CPTAC3 456b4e27-5d07-42a6-b098-81361e72d703 d4b851825866fa52550236e1a2809cd5 {"aliquot_tag": "ALQ_b7d8d31f", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.RNA-Seq.S43_L008_R2.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R2_001.fastq.gz 3868045676 FASTQ S43_L008_R2 unaligned CPTAC3 76f05057-3a1b-4919-af2b-b334855a4e4e b515a61038ab8b5369386a0f3d06452d {"aliquot_tag": "ALQ_b7d8d31f", "sample": "S43", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.RNA-Seq.S95_R1.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R1_001.fastq.gz 4996674187 FASTQ S95_R1 unaligned CPTAC3 3fdce399-670d-4a00-bb99-8c56f913fbb3 82109447645354f2561255e66bb2f953 {"aliquot_tag": "ALQ_9b67190", "sample": "S95", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.S95_R2.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R2_001.fastq.gz 5114594767 FASTQ S95_R2 unaligned CPTAC3 d64294f5-f9cd-4f2a-a46b-a158f31b0303 592372952fff018fd661afbac3d08cad {"aliquot_tag": "ALQ_9b67190", "sample": "S95", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.transcriptome.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.transcriptome.gdc_realn.bam 9201801952 BAM transcriptome harmonized CPTAC3 7475b49a-d767-4a4e-b311-d1a1b80b1753 58db904031e1895967aceb80be601118 {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.transcriptome.gdc_realn.bam 11321138154 BAM transcriptome harmonized CPTAC3 6b34cdb5-6df2-466b-bd27-415d65c8151d b460efc49de4c37ca3222c615293bddb {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.transcriptome.gdc_realn.bam 3844250138 BAM transcriptome harmonized CPTAC3 fd71036a-6f45-4cca-a142-1e98dad699e1 2ad418312d3d8d99170763db84d43614 {"aliquot_tag": "ALQ_e7b810bc", "gdc_sample_type": "Primary Tumor"} -C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.transcriptome.gdc_realn.bam 2992092348 BAM transcriptome harmonized CPTAC3 8fea22ef-765a-4b7b-82a9-1a895933ad49 2655b6e9538368e792ff3a772c1c20b0 {"aliquot_tag": "ALQ_9b67190", "gdc_sample_type": "Primary Tumor"} -C3N-04611.WGS.N C3N-04611 HNSCC WGS blood_normal CPT0261640002 CPT0261640002.WholeGenome.RP-1303.bam 69388797335 BAM aligned CPTAC3 30907803-55ef-4277-982c-4d596fdd57db 1061f1030c64074686cbf23e354a7a81 {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal"} -C3N-04611.WGS.N.hg38 C3N-04611 HNSCC WGS blood_normal CPT0261640002 dda4c83b-732e-4465-9f7d-f790f7328218_wgs_gdc_realn.bam 100987767759 BAM harmonized CPTAC3 1df12409-b1af-4c1a-9fe8-2a494f27c4ab 8b87d7d14c83be0d5a03676c047f401f {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal"} -C3N-04611.WGS.T C3N-04611 HNSCC WGS tumor CPT0261520006 CPT0261520006.WholeGenome.RP-1303.bam 81497922288 BAM aligned CPTAC3 292b35dd-9326-4bc4-8bda-387fafb9874f b22a7d3c42fdc05e6f83aee3a74dffe5 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor"} -C3N-04611.WGS.T.hg38 C3N-04611 HNSCC WGS tumor CPT0261520006 6d4a2a29-c227-4878-8bea-90a054f4950b_wgs_gdc_realn.bam 117637448265 BAM harmonized CPTAC3 a7c396ad-3772-4ade-a102-c4ccb163f59e 45e99ad5316fb04462f5b23fbd520c1b {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor"} -C3N-04611.WXS.A C3N-04611 HNSCC WXS tissue_normal CPT0261550006 CPT0261550006.WholeExome.RP-1303.bam 20936067324 BAM aligned CPTAC3 cb40bedb-2174-4cb3-8f39-a09cdfc34ac9 6893fc917f9d8f09d2c0a7dc4fb5e1ae {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.WXS.A.hg38 C3N-04611 HNSCC WXS tissue_normal CPT0261550006 f1c01f27-2123-48da-bef3-67058cb28608_wxs_gdc_realn.bam 28511351625 BAM harmonized CPTAC3 aa079650-efb8-40dc-872b-de93253040b1 f6cd343b7641f298736decda979d967b {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04611.WXS.N C3N-04611 HNSCC WXS blood_normal CPT0261640002 CPT0261640002.WholeExome.RP-1303.bam 32526004161 BAM aligned CPTAC3 b83b7a07-57ba-43b8-9558-12196e6dae1b 5dcfc7adeb9abe9a4bb4470e0e43e6d9 {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal"} -C3N-04611.WXS.N.hg38 C3N-04611 HNSCC WXS blood_normal CPT0261640002 dda4c83b-732e-4465-9f7d-f790f7328218_wxs_gdc_realn.bam 44449868362 BAM harmonized CPTAC3 69532970-7481-4510-b2fb-e40068fe9423 5a49873bfd5fa95845661a240e84d7ee {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal"} -C3N-04611.WXS.T C3N-04611 HNSCC WXS tumor CPT0261520006 CPT0261520006.WholeExome.RP-1303.bam 24497453964 BAM aligned CPTAC3 24dfe2ab-ebad-4690-adc1-54e5c4ed48c1 26848fd19a7f2072a175b0f6466c9880 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor"} -C3N-04611.WXS.T.hg38 C3N-04611 HNSCC WXS tumor CPT0261520006 6d4a2a29-c227-4878-8bea-90a054f4950b_wxs_gdc_realn.bam 32948781341 BAM harmonized CPTAC3 35f0b6cb-aa7f-4451-a0e3-7066a248c27e 0752a30202fe2b025af17e24eb9c71c3 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor"} -C3N-04660.MethArray.Green.T C3N-04660 LSCC Methylation_Array tumor CPT0333120007 204930640120_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 27955d7c-dd9f-46cf-9438-2b50c6061889 0eeb54cd07f15082591f108c057de022 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor"} -C3N-04660.MethArray.Red.T C3N-04660 LSCC Methylation_Array tumor CPT0333120007 204930640120_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 cef8d95b-cc68-49a0-9cc9-1ba8b36fdff2 dc92cee698ee9286fffd9e1dcec6e573 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor"} -C3N-04660.miRNA-Seq.A.hg38 C3N-04660 LSCC miRNA-Seq tissue_normal CPT0333140006 715cb626-024c-4085-b91d-5c9a60cbe8e8_mirnaseq_gdc_realn.bam 285786722 BAM harmonized CPTAC3 aa45b1be-5599-408b-8268-187f207d072f 66b7990154361c94da17bbaa2753670c {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04660.miRNA-Seq.S16_L006_R1.A C3N-04660 LSCC miRNA-Seq tissue_normal CPT0333140006 201209_UNC32-K00270_0265_AHJ55WBBXY_TACAGC_S16_L006_R1_001.unaln.bam 260476728 BAM S16_L006_R1 unaligned CPTAC3 88b5f70b-367a-4f1c-a4f1-b93d124a7a53 ba4f96f8dee941dcd49495a6cfda59d3 {"aliquot_tag": "ALQ_4992ae26", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04660.miRNA-Seq.S36_L007_R1.T C3N-04660 LSCC miRNA-Seq tumor CPT0333120010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGGCC_S36_L007_R1_001.unaln.bam 218098122 BAM S36_L007_R1 unaligned CPTAC3 de4eaf61-8ff7-41a2-b6fb-3e3979ab2f01 68d56134bd3c76894af21938c8635115 {"aliquot_tag": "ALQ_36aacff2", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04660.miRNA-Seq.T.hg38 C3N-04660 LSCC miRNA-Seq tumor CPT0333120010 2f49ffe2-3e11-40e9-882d-7e372b0da4e8_mirnaseq_gdc_realn.bam 241041016 BAM harmonized CPTAC3 203cdb5f-eec9-4844-92f3-3126ebb46989 299c4861277334b1d68e1d73452652b2 {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor"} -C3N-04660.RNA-Seq.chimeric.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.chimeric.gdc_realn.bam 394372773 BAM chimeric harmonized CPTAC3 47b0d964-1ef5-413a-b91b-88a368b9dbc9 4690de66967f24159bb973738a91e4a2 {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04660.RNA-Seq.chimeric.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.chimeric.gdc_realn.bam 416831460 BAM chimeric harmonized CPTAC3 ccb0ce93-c767-4dda-8d2b-3752f74c68f8 de01392e4d9acc2505dc1dccc44134d8 {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor"} -C3N-04660.RNA-Seq.genomic.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.genomic.gdc_realn.bam 7715664213 BAM genomic harmonized CPTAC3 bc778135-4f78-48fc-b43e-0d2c6c32d44b d663a59264230e8fc0efb1656c903f53 {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04660.RNA-Seq.genomic.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.genomic.gdc_realn.bam 7125312238 BAM genomic harmonized CPTAC3 73abdfa9-1285-4e1e-8661-997380d9e430 08477ba222629e89f86c12893ca6a5fc {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor"} -C3N-04660.RNA-Seq.S23_L006_R1.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R1_001.fastq.gz 3491128050 FASTQ S23_L006_R1 unaligned CPTAC3 f040cd6f-bca4-4219-90ce-79bb548ff258 95c536a656e0f8bc39014ff12a0ab182 {"aliquot_tag": "ALQ_36aacff2", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04660.RNA-Seq.S23_L006_R2.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R2_001.fastq.gz 3876810533 FASTQ S23_L006_R2 unaligned CPTAC3 1ffd9fe7-3bef-45ce-a22d-76d05d3429a6 d29a67badd82392e680792d342f91748 {"aliquot_tag": "ALQ_36aacff2", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04660.RNA-Seq.S5_L002_R1.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R1_001.fastq.gz 3909228727 FASTQ S5_L002_R1 unaligned CPTAC3 f2c7e58e-88ab-4532-a94c-c6df1b052c8e 3b209090e61165ca225e4d898ded19d6 {"aliquot_tag": "ALQ_4992ae26", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04660.RNA-Seq.S5_L002_R2.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R2_001.fastq.gz 4232579809 FASTQ S5_L002_R2 unaligned CPTAC3 d1ebe51b-7462-45de-af90-e037d6289775 df00fdd9d9a6ca33f8f1dfd90aa9aac9 {"aliquot_tag": "ALQ_4992ae26", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04660.RNA-Seq.transcriptome.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.transcriptome.gdc_realn.bam 9344688192 BAM transcriptome harmonized CPTAC3 c514c463-8b19-439b-9f92-7821a1f11269 1e8eb03bff7486584d81ea8d7b41fc2e {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04660.RNA-Seq.transcriptome.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.transcriptome.gdc_realn.bam 10508493121 BAM transcriptome harmonized CPTAC3 c25c3fc4-d3b0-4c3f-abdd-f8e47f2ab67f 36a1bfa0168270d2b301586f4e90850d {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor"} -C3N-04660.WGS.N C3N-04660 LSCC WGS blood_normal CPT0333210002 CPT0333210002.WholeGenome.RP-2158.bam 23692882633 BAM aligned CPTAC3 702de41c-f45c-4111-bad1-03264dd01574 e0dce14acb2ece32b622500e04cfd275 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-04660.WGS.N.hg38 C3N-04660 LSCC WGS blood_normal CPT0333210002 b5493d9b-8080-415f-bc7d-3a19c9aa7685_wgs_gdc_realn.bam 69250956663 BAM harmonized CPTAC3 719e10b8-ca89-4b4b-af1e-abc64649587d 8516be70df3c0319e535f643f875b085 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-04660.WGS.T C3N-04660 LSCC WGS tumor CPT0333120007 CPT0333120007.WholeGenome.RP-2158.bam 24834974591 BAM aligned CPTAC3 a8ef9313-a212-407a-a2a4-ef6d38afbda3 fda47cdece3bca876455334e8a35083e {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor"} -C3N-04660.WGS.T.hg38 C3N-04660 LSCC WGS tumor CPT0333120007 d70a67ad-eeb8-4799-9145-f78099cba111_wgs_gdc_realn.bam 76155985980 BAM harmonized CPTAC3 f2c57f08-2f01-4553-959b-d4c3a4b4dfc6 11a529da808a87702f7c5aea60e56b13 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor"} -C3N-04660.WXS.N C3N-04660 LSCC WXS blood_normal CPT0333210002 CPT0333210002.WholeExome.RP-1303.bam 25664685884 BAM aligned CPTAC3 d3ec620f-eb84-4885-98fc-935460498cff af4e1c223334c6497109b934e3fc6bf3 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-04660.WXS.N.hg38 C3N-04660 LSCC WXS blood_normal CPT0333210002 b5493d9b-8080-415f-bc7d-3a19c9aa7685_wxs_gdc_realn.bam 34084255624 BAM harmonized CPTAC3 0e3dca7d-b14b-4a3a-a9cd-83e0758fdea6 7cfbeba92ee331408cf592c883a73391 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal"} -C3N-04660.WXS.T C3N-04660 LSCC WXS tumor CPT0333120007 CPT0333120007.WholeExome.RP-1303.bam 38570652273 BAM aligned CPTAC3 e5fb9fac-cb74-46c0-b33f-c532c79635d0 944587b3b5e90a10f1777583d075c726 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor"} -C3N-04660.WXS.T.hg38 C3N-04660 LSCC WXS tumor CPT0333120007 d70a67ad-eeb8-4799-9145-f78099cba111_wxs_gdc_realn.bam 54457425648 BAM harmonized CPTAC3 84dd3683-e4d3-4f0e-84f0-b19c7898db2c 64296d1547fad549b4d3382abfcaf91f {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor"} -C3N-04662.MethArray.Green.A C3N-04662 LSCC Methylation_Array tissue_normal CPT0333340006 204930630084_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e9530a6b-2505-4ded-be2e-0c0ebc40bab4 57722d7aed4e6ed9d3aed0b9353aef62 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.MethArray.Green.T C3N-04662 LSCC Methylation_Array tumor CPT0333320007 204930630082_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 79850363-7624-4c06-b92c-b69f873c1324 3cea56a25677ce947b3e1b7d7d301f98 {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor"} -C3N-04662.MethArray.Red.A C3N-04662 LSCC Methylation_Array tissue_normal CPT0333340006 204930630084_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 5dcf9c97-8bb0-4a81-a648-983c62c21ac4 bde1e02745052bcc768884fa0aca3d37 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.MethArray.Red.T C3N-04662 LSCC Methylation_Array tumor CPT0333320007 204930630082_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 a82a094b-e152-4f6f-8be5-df9c38161661 eaaea376837682228869c3d5cac108e3 {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor"} -C3N-04662.miRNA-Seq.A.hg38 C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 b44ac144-a0ab-458c-9b23-90e9115cc7be_mirnaseq_gdc_realn.bam 373857070 BAM harmonized CPTAC3 444433b2-76cb-4492-94cd-0f52eb83d84d acb087f1f1c76ad7c8618592071c3409 {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.miRNA-Seq.S17_L006_R1.A C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 201209_UNC32-K00270_0265_AHJ55WBBXY_TATAAT_S17_L006_R1_001.unaln.bam 347846414 BAM S17_L006_R1 unaligned CPTAC3 8bc072f2-b507-4b35-8c52-1d329d6cac8b a570b39431a5e2cd7e688b02796d9aa3 {"aliquot_tag": "ALQ_94e512bc", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.miRNA-Seq.S37_L007_R1.T C3N-04662 LSCC miRNA-Seq tumor CPT0333320010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTTTCG_S37_L007_R1_001.unaln.bam 280025904 BAM S37_L007_R1 unaligned CPTAC3 4ba3830c-642a-46f5-bdac-b0bca79f15f7 72fa1578a807859c05eff650aea233ec {"aliquot_tag": "ALQ_7b626ef9", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04662.miRNA-Seq.T.hg38 C3N-04662 LSCC miRNA-Seq tumor CPT0333320010 30b8806e-7738-4358-95eb-7233e1b43af6_mirnaseq_gdc_realn.bam 306286432 BAM harmonized CPTAC3 4575f552-e653-493b-b327-f568fe3ca552 08f8bfb1c798cb58676cefc2915b53aa {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor"} -C3N-04662.RNA-Seq.chimeric.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.chimeric.gdc_realn.bam 194255095 BAM chimeric harmonized CPTAC3 81a8b067-3bfc-4443-9689-e2d547e6c8e4 e202f371944d7398c866f971d594f80f {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.RNA-Seq.chimeric.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.chimeric.gdc_realn.bam 375735046 BAM chimeric harmonized CPTAC3 823d5bed-89b2-478b-a663-c9621bf37f66 7688ce23a4bc3ec1b1d5e86c3265ad31 {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor"} -C3N-04662.RNA-Seq.genomic.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.genomic.gdc_realn.bam 6375840251 BAM genomic harmonized CPTAC3 b24dfc08-1438-4605-9867-2c3ef7d0ef2a 46e0850cf456fbf8835b14e45049d769 {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.RNA-Seq.genomic.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.genomic.gdc_realn.bam 8177926663 BAM genomic harmonized CPTAC3 cab38c17-a3f9-4412-83aa-7a1fb4fbbf73 7c08c043fca21487e2d70f499f0c24ab {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor"} -C3N-04662.RNA-Seq.S20_L005_R1.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4078146955 FASTQ S20_L005_R1 unaligned CPTAC3 b0910594-ba39-4b73-9c92-87889032b3df 9f0a777b86beabfc81b55a2b5b15f100 {"aliquot_tag": "ALQ_7b626ef9", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04662.RNA-Seq.S20_L005_R2.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4470105933 FASTQ S20_L005_R2 unaligned CPTAC3 18d596f5-5d39-4ae3-9538-45967468203f 0c32737f44323b86dceffff3efbdbf54 {"aliquot_tag": "ALQ_7b626ef9", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04662.RNA-Seq.S7_L002_R1.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R1_001.fastq.gz 2954081817 FASTQ S7_L002_R1 unaligned CPTAC3 9d3d2907-4b0b-420d-bbaa-33de825bd2d8 4a84e8d1cdea12f929bcfe60d3354e1c {"aliquot_tag": "ALQ_94e512bc", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.RNA-Seq.S7_L002_R2.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R2_001.fastq.gz 3225243949 FASTQ S7_L002_R2 unaligned CPTAC3 cf2fb946-7a89-4be7-bcf1-3dbefd88c208 37822a8be538071c3dc8c4047ae26f6f {"aliquot_tag": "ALQ_94e512bc", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.RNA-Seq.transcriptome.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.transcriptome.gdc_realn.bam 8668220822 BAM transcriptome harmonized CPTAC3 26734ac2-b2b1-46ba-93ab-38af64739fd9 ddcd89488460fcfd49e5d8f8d50da9f2 {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.RNA-Seq.transcriptome.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.transcriptome.gdc_realn.bam 11535902333 BAM transcriptome harmonized CPTAC3 b4ccaffb-1adb-4c9e-9b99-58416030c1e1 a454ce8db2d669b1eb23dd0d9b21d70d {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor"} -C3N-04662.WGS.N C3N-04662 LSCC WGS blood_normal CPT0333410002 CPT0333410002.WholeGenome.RP-2158.bam 26911219456 BAM aligned CPTAC3 54e8f619-de40-4efc-95bb-9de7a2f02084 311500a9c6cb2c7bc448d0603c361e47 {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04662.WGS.N.hg38 C3N-04662 LSCC WGS blood_normal CPT0333410002 b3f467bd-e6f5-4a05-830e-efff563e1830_wgs_gdc_realn.bam 80842847804 BAM harmonized CPTAC3 f326c8cb-0016-46ed-942e-7cb72363307b e744761fe355515947eee58606fec0fb {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04662.WGS.T C3N-04662 LSCC WGS tumor CPT0333320007 CPT0333320007.WholeGenome.RP-2158.bam 26925350380 BAM aligned CPTAC3 7293efa6-b4c4-4660-a400-79126a9f9892 f3cd1fe56e4224dc173f2d364e5b373f {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor"} -C3N-04662.WGS.T.hg38 C3N-04662 LSCC WGS tumor CPT0333320007 05bbfee8-76ac-4003-9b21-d8c56580a097_wgs_gdc_realn.bam 83592350260 BAM harmonized CPTAC3 c3d59670-9c58-4bef-838e-1da469389883 c74301e9c837d5f4f629ae042df4cdac {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor"} -C3N-04662.WXS.A C3N-04662 LSCC WXS tissue_normal CPT0333340006 CPT0333340006.WholeExome.RP-1303.bam 20135077034 BAM aligned CPTAC3 64f68efa-1415-4a46-8409-7317be80478f 59b80255abd1ab699b9318b370323755 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.WXS.A.hg38 C3N-04662 LSCC WXS tissue_normal CPT0333340006 e8106a2c-19b6-4907-89ae-db47d17551ef_wxs_gdc_realn.bam 28222677161 BAM harmonized CPTAC3 3c18b325-ae25-4cb4-857d-ff19f1ef7859 f23721a03a59f33e5d121d8b824ca143 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04662.WXS.N C3N-04662 LSCC WXS blood_normal CPT0333410002 CPT0333410002.WholeExome.RP-1303.bam 23127820874 BAM aligned CPTAC3 52c70757-e0fc-4d66-a16b-d2e343deeabe 786bb743583f6df5f826a6d80486a15e {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04662.WXS.N.hg38 C3N-04662 LSCC WXS blood_normal CPT0333410002 b3f467bd-e6f5-4a05-830e-efff563e1830_wxs_gdc_realn.bam 31861911526 BAM harmonized CPTAC3 6c44358e-51ab-4164-bf88-592a63b5959f 21d3a8b586d8de31a2bb3b039169ee9a {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal"} -C3N-04662.WXS.T C3N-04662 LSCC WXS tumor CPT0333320007 CPT0333320007.WholeExome.RP-1303.bam 21841404950 BAM aligned CPTAC3 eeeb20d0-fdb0-41bc-81e1-578860b3547d e1d78889e876ac79d28ba47f70b4582a {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor"} -C3N-04662.WXS.T.hg38 C3N-04662 LSCC WXS tumor CPT0333320007 05bbfee8-76ac-4003-9b21-d8c56580a097_wxs_gdc_realn.bam 30235122766 BAM harmonized CPTAC3 e65b0822-89c0-4f9b-a5df-104eedef99ec 5ac23d61fa46ad893c4d2ec9375cf30b {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor"} -C3N-04665.MethArray.Green.A C3N-04665 LSCC Methylation_Array tissue_normal CPT0333540006 204930640051_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 5f55b2a0-47d3-46b7-813d-a9f1b8a2f62e 85b29c34f5013b9c4c1d1b1d31f8bd88 {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.MethArray.Green.T C3N-04665 LSCC Methylation_Array tumor CPT0333520007 204930630113_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 73732e90-9e74-42d0-b6e7-c6efc66a23bb 6fd259befc2dcb34699c1978025128ae {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor"} -C3N-04665.MethArray.Red.A C3N-04665 LSCC Methylation_Array tissue_normal CPT0333540006 204930640051_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 e538b2a0-fbd2-47e6-8e73-b008cf8b16a7 1ba835378007b3a53694ab394c5dfd70 {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.MethArray.Red.T C3N-04665 LSCC Methylation_Array tumor CPT0333520007 204930630113_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 06e37123-0b12-420e-81ec-40b7742ddf78 53e5b385c2ecd33ba562b2c4243b3978 {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor"} -C3N-04665.miRNA-Seq.A.hg38 C3N-04665 LSCC miRNA-Seq tissue_normal CPT0333540009 d75e5a5b-2475-4e92-8feb-e7f78b36afb6_mirnaseq_gdc_realn.bam 235057631 BAM harmonized CPTAC3 eb348191-33cf-4e1e-8df0-00e9130ae2f6 a194c6057f05ad604b5702ebbff29cd6 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.miRNA-Seq.S11_L006_R1.T C3N-04665 LSCC miRNA-Seq tumor CPT0333520010 201209_UNC32-K00270_0265_AHJ55WBBXY_CGTACG_S11_L006_R1_001.unaln.bam 304496074 BAM S11_L006_R1 unaligned CPTAC3 1980e0cd-8f60-43b9-9018-4307eefd41c5 ee69005ce83b9c76bbe077059577adb4 {"aliquot_tag": "ALQ_ad3b8de4", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04665.miRNA-Seq.S18_L007_R1.A C3N-04665 LSCC miRNA-Seq tissue_normal CPT0333540009 201209_UNC32-K00270_0265_AHJ55WBBXY_TCATTC_S18_L007_R1_001.unaln.bam 212886104 BAM S18_L007_R1 unaligned CPTAC3 e5b33b26-0938-42cb-bca4-48a6dd9cdbf0 6d27bd2519fe34b6d1e2ba6f1b4cdb60 {"aliquot_tag": "ALQ_42bcf1a1", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.miRNA-Seq.T.hg38 C3N-04665 LSCC miRNA-Seq tumor CPT0333520010 45d3b3a8-999f-4aba-8bdc-e6c37b7a3b82_mirnaseq_gdc_realn.bam 330656629 BAM harmonized CPTAC3 c571ff62-a952-4948-a60c-d9ab1ce8f677 342ececac2e5ac981525abe311ad12bc {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor"} -C3N-04665.RNA-Seq.chimeric.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.chimeric.gdc_realn.bam 255926204 BAM chimeric harmonized CPTAC3 635fba03-571f-4a75-891a-8053164e8045 7b42b2d47b3c999beecb8c2833ebb8f0 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.RNA-Seq.chimeric.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.chimeric.gdc_realn.bam 296969041 BAM chimeric harmonized CPTAC3 5706ec4c-275a-4fae-8158-67aa58f05306 23c39bc064a41065dd1a26131bce4e1a {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor"} -C3N-04665.RNA-Seq.genomic.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.genomic.gdc_realn.bam 7667196025 BAM genomic harmonized CPTAC3 e5c7c433-7a68-427e-9b78-dd6c1b0b544f abeeff3a48e536034cf9506180a959f0 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.RNA-Seq.genomic.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.genomic.gdc_realn.bam 6607150847 BAM genomic harmonized CPTAC3 06037433-3e3c-4a0c-8a87-79c109046628 9805b140296201c3db939b3cea3f2d10 {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor"} -C3N-04665.RNA-Seq.S1_L001_R1.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 3282015159 FASTQ S1_L001_R1 unaligned CPTAC3 81481aff-e1d8-45ab-8755-17a61ff5915c 1cf9728e014a5efe458e0094a9e0325f {"aliquot_tag": "ALQ_ad3b8de4", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04665.RNA-Seq.S1_L001_R2.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3724470408 FASTQ S1_L001_R2 unaligned CPTAC3 a2b99b44-8278-422c-addc-0cbab637d56d 28a78fa66492a53a138f310ef7a03685 {"aliquot_tag": "ALQ_ad3b8de4", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04665.RNA-Seq.S8_L002_R1.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R1_001.fastq.gz 3747629000 FASTQ S8_L002_R1 unaligned CPTAC3 1db3ad6b-515d-4fc3-ab1b-ae3fabdcc438 dc197baca7f1b32f20d197ce286022f1 {"aliquot_tag": "ALQ_42bcf1a1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.RNA-Seq.S8_L002_R2.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R2_001.fastq.gz 4142893674 FASTQ S8_L002_R2 unaligned CPTAC3 f2a6a325-7b60-442e-8b7c-397a990da879 1ab9dc07bb33783a726d1db8ba9f8450 {"aliquot_tag": "ALQ_42bcf1a1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.RNA-Seq.transcriptome.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.transcriptome.gdc_realn.bam 10272208561 BAM transcriptome harmonized CPTAC3 dd810f2f-b990-481d-9942-1ad45b5879ea b11d6cd4651e398a8aebe2544d97e3c5 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.RNA-Seq.transcriptome.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.transcriptome.gdc_realn.bam 10066549910 BAM transcriptome harmonized CPTAC3 1aa37309-5578-4361-9d59-a0caeb4d612d 0a5371aedad1f33f780824212d4eb78f {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor"} -C3N-04665.WGS.N C3N-04665 LSCC WGS blood_normal CPT0333610002 CPT0333610002.WholeGenome.RP-2158.bam 25078124633 BAM aligned CPTAC3 7820c333-a662-4225-82e4-4b2e5df506bc 6b07674da95dc32561c228bb6cc0f8f8 {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04665.WGS.N.hg38 C3N-04665 LSCC WGS blood_normal CPT0333610002 dd6ddc5f-e564-4258-aca4-fc8114d10eba_wgs_gdc_realn.bam 73831542731 BAM harmonized CPTAC3 7e34ed9f-21f1-483e-b904-094a98a12227 b944a3d5ad9894269df63c2b965b6f04 {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04665.WGS.T C3N-04665 LSCC WGS tumor CPT0333520007 CPT0333520007.WholeGenome.RP-2158.bam 25184916025 BAM aligned CPTAC3 4792ea11-97a4-4ec9-a4eb-4d9ff70d9070 b00ce85e4028eee427dd042e1cf1378c {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor"} -C3N-04665.WGS.T.hg38 C3N-04665 LSCC WGS tumor CPT0333520007 43ba70f5-ce27-48f1-b6a4-939a60baadc5_wgs_gdc_realn.bam 75167909370 BAM harmonized CPTAC3 9e1090b9-d076-4d7c-af75-91d0c44c7660 70daa289a0cdaea9c1d3b9c6addd3782 {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor"} -C3N-04665.WXS.A C3N-04665 LSCC WXS tissue_normal CPT0333540006 CPT0333540006.WholeExome.RP-1303.bam 26094518596 BAM aligned CPTAC3 3159bf0c-cd3d-47e3-847d-350b790751e0 9a5ce87dfbc7a7950249f0fb9c874475 {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.WXS.A.hg38 C3N-04665 LSCC WXS tissue_normal CPT0333540006 eb806e59-c675-471a-b2cc-52f45840ccfb_wxs_gdc_realn.bam 36499380027 BAM harmonized CPTAC3 ecf85848-7546-46a5-a8ff-a3d66e10885e 92113d5062af88e39b336fbcc268973c {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04665.WXS.N C3N-04665 LSCC WXS blood_normal CPT0333610002 CPT0333610002.WholeExome.RP-1303.bam 27513226676 BAM aligned CPTAC3 c92328db-2c81-4c74-8eaa-6a5ee2443b7d 961d916b285848a57441287da3942404 {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04665.WXS.N.hg38 C3N-04665 LSCC WXS blood_normal CPT0333610002 dd6ddc5f-e564-4258-aca4-fc8114d10eba_wxs_gdc_realn.bam 37906239530 BAM harmonized CPTAC3 7f8f5622-dcc6-4406-8ea2-cd32abb8d8f9 ed21b1cc3f217f7e2005a4df99fa32da {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04665.WXS.T C3N-04665 LSCC WXS tumor CPT0333520007 CPT0333520007.WholeExome.RP-1303.bam 18015736580 BAM aligned CPTAC3 b4f38e74-c4dd-4fa5-824b-ce01eec3e668 b25f116c86e2b56f069e1563295b1dda {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor"} -C3N-04665.WXS.T.hg38 C3N-04665 LSCC WXS tumor CPT0333520007 43ba70f5-ce27-48f1-b6a4-939a60baadc5_wxs_gdc_realn.bam 25071141506 BAM harmonized CPTAC3 effb605f-3420-40c4-90be-59698eacfdf3 0501ba89945d63aa79b769e991444c21 {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor"} -C3N-04673.MethArray.Green.T C3N-04673 LSCC Methylation_Array tumor CPT0293380006 204367490082_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 900f1d06-fc5a-4bc2-9fa9-40b3ef521999 89d15ec195f07ebbd3e609600b38a880 {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor"} -C3N-04673.MethArray.Red.T C3N-04673 LSCC Methylation_Array tumor CPT0293380006 204367490082_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 2aa33831-946e-4150-8559-f858ec460128 193a6688f7c743798f7bfa4d621906ea {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor"} -C3N-04673.miRNA-Seq.S8_L008_R1.T C3N-04673 LSCC miRNA-Seq tumor CPT0293380009 200224_UNC31-K00269_0267_AHC722BBXY_ACTTGA_S8_L008_R1_001.unaln.bam 215568975 BAM S8_L008_R1 unaligned CPTAC3 191d1827-ac93-4b43-8b01-2158ab10754e dfa2cf4e23d4b83034dc00ac57630798 {"aliquot_tag": "ALQ_d7aef736", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04673.miRNA-Seq.T.hg38 C3N-04673 LSCC miRNA-Seq tumor CPT0293380009 b714587e-749d-4596-9125-9b9986813c78_mirnaseq_gdc_realn.bam 247746274 BAM harmonized CPTAC3 e0bbd290-f0b8-45e3-89cc-24d8dd7e37f9 b3edff0bcb794db5a3d5b0047d6f41d6 {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor"} -C3N-04673.RNA-Seq.chimeric.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.chimeric.gdc_realn.bam 37786283 BAM chimeric harmonized CPTAC3 718eb02a-5181-4ffe-9000-ea6789ff3e10 e2200c9bb0361d75e17b6a902a582c44 {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor"} -C3N-04673.RNA-Seq.genomic.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.genomic.gdc_realn.bam 8732647620 BAM genomic harmonized CPTAC3 61714169-0609-4d03-b830-7c0321fbd479 1b3f3e484a4a350a7ea7d75587f209ec {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor"} -C3N-04673.RNA-Seq.S8_L002_R1.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 4368884839 FASTQ S8_L002_R1 unaligned CPTAC3 6275c4d1-faa2-413a-b706-87387c66a97f b9d8c6a0dd3cd476c124a44236b9536c {"aliquot_tag": "ALQ_d7aef736", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04673.RNA-Seq.S8_L002_R2.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4697890786 FASTQ S8_L002_R2 unaligned CPTAC3 78930632-295f-491b-b11a-b6464128ac8b c6ce4647ab18358e2e78480da45d590d {"aliquot_tag": "ALQ_d7aef736", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04673.RNA-Seq.transcriptome.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.transcriptome.gdc_realn.bam 13397484474 BAM transcriptome harmonized CPTAC3 d625d26e-6f37-41cc-bac7-6d0e11f03450 0a8f08ec3be8ded38991a666db7289bc {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor"} -C3N-04673.WGS.N C3N-04673 LSCC WGS blood_normal CPT0293420002 CPT0293420002.WholeGenome.RP-2158.bam 25389182238 BAM aligned CPTAC3 de2b554f-e7c2-493a-819e-81233c40c120 02f4c4e38c678dcfb370eca8c35ece8e {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04673.WGS.N.hg38 C3N-04673 LSCC WGS blood_normal CPT0293420002 2146b731-6763-48fb-a3eb-b18ee89cfb73_wgs_gdc_realn.bam 74356314911 BAM harmonized CPTAC3 e54044d4-1010-4a9d-a0ae-fcc4b14d8126 2ebe242be637818d173ea615896d95f0 {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04673.WGS.T C3N-04673 LSCC WGS tumor CPT0293380006 CPT0293380006.WholeGenome.RP-2158.bam 26421022844 BAM aligned CPTAC3 1d027ec3-4a87-4b62-ad91-a760d6e8c94c e9fe1621062bf623a383ec6232054691 {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor"} -C3N-04673.WGS.T.hg38 C3N-04673 LSCC WGS tumor CPT0293380006 70db54d7-3201-4b69-bb47-74987b867428_wgs_gdc_realn.bam 77310697754 BAM harmonized CPTAC3 3aec8b92-8f04-4415-91a0-083e7d10a472 0f93fed350aa00fb17c6aa18d6450721 {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor"} -C3N-04673.WXS.N C3N-04673 LSCC WXS blood_normal CPT0293420002 CPT0293420002.WholeExome.RP-1303.bam 22649994212 BAM aligned CPTAC3 8d4d9609-468c-4b17-9c4d-ea76cfbd7f2f d2b278c40c09aa2131cc757720b0bab6 {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04673.WXS.N.hg38 C3N-04673 LSCC WXS blood_normal CPT0293420002 2146b731-6763-48fb-a3eb-b18ee89cfb73_wxs_gdc_realn.bam 30833374383 BAM harmonized CPTAC3 e8d4dca9-29c3-40ba-a3ce-2c8db9fda390 fd8d578e489bb4ddfa73e9697db8759e {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal"} -C3N-04673.WXS.T C3N-04673 LSCC WXS tumor CPT0293380006 CPT0293380006.WholeExome.RP-1303.bam 19448785135 BAM aligned CPTAC3 c996f860-b7a0-4b27-9cc7-c7494df3801b fcc420f97db5ce1e762c583690c6bdfa {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor"} -C3N-04673.WXS.T.hg38 C3N-04673 LSCC WXS tumor CPT0293380006 70db54d7-3201-4b69-bb47-74987b867428_wxs_gdc_realn.bam 26570342062 BAM harmonized CPTAC3 e321e2ce-0163-41ec-8630-71a002b3d669 cf21094c84bd379f3a68a0662608234f {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor"} -C3N-04683.MethArray.Green.T C3N-04683 GBM Methylation_Array tumor CPT0293480006 204372030013_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d483dd15-ca9e-4e49-8172-0335f7a7e064 a95f30665d4f21cf5175da9d71f58ef2 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor"} -C3N-04683.MethArray.Red.T C3N-04683 GBM Methylation_Array tumor CPT0293480006 204372030013_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 218867cf-8cd8-43a3-ab6c-6459ee4a842a 2fbba98dc38ec29189f346e85cda4fe4 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor"} -C3N-04683.miRNA-Seq.S45_L008_R1.T C3N-04683 GBM miRNA-Seq tumor CPT0293480009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCATTC_S45_L008_R1_001.unaln.bam 221888762 BAM S45_L008_R1 unaligned CPTAC3 4cb38538-f774-49dd-b1f9-6cd0752fc269 fe119ff3ceb7c359bc555044bbd9affa {"aliquot_tag": "ALQ_caabc78e", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04683.miRNA-Seq.T.hg38 C3N-04683 GBM miRNA-Seq tumor CPT0293480009 16109734-8b9d-4364-9c77-bacca3460cf4_mirnaseq_gdc_realn.bam 246174415 BAM harmonized CPTAC3 311a4ebe-7e72-4e55-a502-bd47c7a135a1 cae4d98340d45be7130a7ea7db450491 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor"} -C3N-04683.RNA-Seq.chimeric.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.chimeric.gdc_realn.bam 31617774 BAM chimeric harmonized CPTAC3 b31a92cf-9062-44d8-8751-8cc5cd81f972 d6ab1e329e19a6684f8db9853bb3bf04 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor"} -C3N-04683.RNA-Seq.genomic.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.genomic.gdc_realn.bam 7374346290 BAM genomic harmonized CPTAC3 4437ef66-d3f6-4442-a058-e446f580b3cd 130a697ca4b70e881cbb1061dd803eb9 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor"} -C3N-04683.RNA-Seq.S64_L007_R1.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R1_001.fastq.gz 3540596161 FASTQ S64_L007_R1 unaligned CPTAC3 4501fe75-7e04-4fc8-9b96-80dc695086b6 0e4cf879fa33f40b221ceb74689ecf6e {"aliquot_tag": "ALQ_caabc78e", "sample": "S64", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04683.RNA-Seq.S64_L007_R2.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ S64_L007_R2 unaligned CPTAC3 e7334afa-2cbe-448d-9768-0bff2678dec7 6b87dfb9970d0cf2e5316a174e6d8577 {"aliquot_tag": "ALQ_caabc78e", "sample": "S64", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04683.RNA-Seq.transcriptome.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.transcriptome.gdc_realn.bam 8737814989 BAM transcriptome harmonized CPTAC3 ff11363d-4ef7-403b-a223-7ead34a39590 3af3be81a150497b3402dd1902b6d969 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor"} -C3N-04683.WGS.N C3N-04683 GBM WGS blood_normal CPT0293500002 CPT0293500002.WholeGenome.RP-2158.bam 23861570825 BAM aligned CPTAC3 069f7c09-b676-4e5a-ba82-2a9a294626e4 ccc32d0f3fc0645e429797f55e51564f {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal"} -C3N-04683.WGS.N.hg38 C3N-04683 GBM WGS blood_normal CPT0293500002 83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wgs_gdc_realn.bam 71643728765 BAM harmonized CPTAC3 f3bee196-c66b-45c1-92f3-fb04a65c0b65 ccdfbbaeb5ce4a4620f1005631128dee {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal"} -C3N-04683.WGS.T C3N-04683 GBM WGS tumor CPT0293480006 CPT0293480006.WholeGenome.RP-2158.bam 26158848666 BAM aligned CPTAC3 d33daf31-0425-4a15-8b2f-481a5eb955d3 7e58ca71df02cbbaff91ea66fdefc4c1 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor"} -C3N-04683.WGS.T.hg38 C3N-04683 GBM WGS tumor CPT0293480006 caea80b3-44ef-4e4b-a5a5-91889e0ca761_wgs_gdc_realn.bam 78260836985 BAM harmonized CPTAC3 9e7543c1-4ea4-4c3c-96ca-788a5933eb1b 3842a14c65b9b5ff0e856fd1b2e1c3b5 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor"} -C3N-04683.WXS.N C3N-04683 GBM WXS blood_normal CPT0293500002 CPT0293500002.WholeExome.RP-1303.bam 23178721077 BAM aligned CPTAC3 c3760cf6-acd6-4c2e-8fb8-a1f0d09458bf 6c58fe6affa84fe7dcc4fe3258cf6727 {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal"} -C3N-04683.WXS.N.hg38 C3N-04683 GBM WXS blood_normal CPT0293500002 83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wxs_gdc_realn.bam 31548967163 BAM harmonized CPTAC3 4cd843ae-9cf6-4d57-84d1-d569c1e95ddf 7e9256d8ba34af6f480c1fb2540bdaf0 {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal"} -C3N-04683.WXS.T C3N-04683 GBM WXS tumor CPT0293480006 CPT0293480006.WholeExome.RP-1303.bam 20458737584 BAM aligned CPTAC3 ae7f4ae7-797e-4ad8-a827-1459e7f0c6b0 68f16ba08f498f521e88ec11ae39179d {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor"} -C3N-04683.WXS.T.hg38 C3N-04683 GBM WXS tumor CPT0293480006 caea80b3-44ef-4e4b-a5a5-91889e0ca761_wxs_gdc_realn.bam 29106959762 BAM harmonized CPTAC3 eb548d65-f75d-43a2-8ff7-91f8654f2ea7 45c3a28d3b2473fb4c4cf8bd698e4b8f {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor"} -C3N-04686.MethArray.Green.T C3N-04686 GBM Methylation_Array tumor CPT0293570006 204367490084_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66a26213-a395-480b-9256-5abda11e2cf5 6b69a1776224b8c5df82d268a72584e8 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor"} -C3N-04686.MethArray.Red.T C3N-04686 GBM Methylation_Array tumor CPT0293570006 204367490084_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 b80b6883-9978-4079-83f6-221061a28c57 2c7736cb9a6f9eb1613fc473f56fc5ff {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor"} -C3N-04686.miRNA-Seq.S36_L008_R1.T C3N-04686 GBM miRNA-Seq tumor CPT0293570009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCAACA_S36_L008_R1_001.unaln.bam 258556529 BAM S36_L008_R1 unaligned CPTAC3 caf47f87-2541-49f0-ad07-f4c0332f823c 1fb2bda6ad5031c47939141caab55161 {"aliquot_tag": "ALQ_83a783fa", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04686.miRNA-Seq.T.hg38 C3N-04686 GBM miRNA-Seq tumor CPT0293570009 4ea5c927-9285-40e9-b09b-04885b88f969_mirnaseq_gdc_realn.bam 290410092 BAM harmonized CPTAC3 549a369e-c652-493b-a59b-a2ed261aa15f adeafb633053955ac290bdbe2310e9e1 {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor"} -C3N-04686.RNA-Seq.chimeric.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.chimeric.gdc_realn.bam 29743783 BAM chimeric harmonized CPTAC3 31126ba1-8293-471b-b815-262d1e328b23 346356e7e24eaa08ce523ee50f5f309f {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor"} -C3N-04686.RNA-Seq.genomic.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.genomic.gdc_realn.bam 8202374839 BAM genomic harmonized CPTAC3 01349435-6f3c-49d4-af02-17a528fffac2 488e603b5703b00166a65fc75743f0c0 {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor"} -C3N-04686.RNA-Seq.S14_L004_R1.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ S14_L004_R1 unaligned CPTAC3 157280cb-210f-407f-997c-cbd5fbd18578 e0f8294a1eb035c954a3fbc05b11716d {"aliquot_tag": "ALQ_83a783fa", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04686.RNA-Seq.S14_L004_R2.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ S14_L004_R2 unaligned CPTAC3 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 1721a99d2d7018e1c7e25d1ea23ff2ef {"aliquot_tag": "ALQ_83a783fa", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04686.RNA-Seq.transcriptome.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.transcriptome.gdc_realn.bam 9892164091 BAM transcriptome harmonized CPTAC3 01f4dfba-1e37-4677-af80-e1367363ef1d 39e6af1a221a8eca8de191d57de4c37f {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor"} -C3N-04686.WGS.N C3N-04686 GBM WGS blood_normal CPT0293620002 CPT0293620002.WholeGenome.RP-2158.bam 22070360060 BAM aligned CPTAC3 e8306e62-ec47-4ca0-b8ba-9fa4b7a668e7 b77b1506c350d139b34023b8960abd87 {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal"} -C3N-04686.WGS.N.hg38 C3N-04686 GBM WGS blood_normal CPT0293620002 04d7ff8e-1924-477d-a04b-5eaef2815a7d_wgs_gdc_realn.bam 66143723882 BAM harmonized CPTAC3 1617d7cd-32d7-40c4-92a8-c7d33265aeea 980bdbd23325fd3b1145f84b10c00cc6 {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal"} -C3N-04686.WGS.T C3N-04686 GBM WGS tumor CPT0293570006 CPT0293570006.WholeGenome.RP-2158.bam 26806647950 BAM aligned CPTAC3 224d7c26-b579-4717-864d-ea58579ea40f f4dc76a7a066aa6b0f1e837e42b51d66 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor"} -C3N-04686.WGS.T.hg38 C3N-04686 GBM WGS tumor CPT0293570006 c5c81116-8317-4cbd-89c7-d189c6bd58d5_wgs_gdc_realn.bam 79483468119 BAM harmonized CPTAC3 59582a18-0dfc-420d-bfbd-dfd9aac6c58a 5daa3d0c2ef17566ace9771687e836d0 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor"} -C3N-04686.WXS.N C3N-04686 GBM WXS blood_normal CPT0293620002 CPT0293620002.WholeExome.RP-1303.bam 26880496920 BAM aligned CPTAC3 b2e7a4a2-092b-4219-9d0c-f194bde58697 52778880483816158cdc79715e542179 {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal"} -C3N-04686.WXS.N.hg38 C3N-04686 GBM WXS blood_normal CPT0293620002 04d7ff8e-1924-477d-a04b-5eaef2815a7d_wxs_gdc_realn.bam 36653203165 BAM harmonized CPTAC3 f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8 344b6031b7ad1841f6723d0064cee72b {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal"} -C3N-04686.WXS.T C3N-04686 GBM WXS tumor CPT0293570006 CPT0293570006.WholeExome.RP-1303.bam 21163461417 BAM aligned CPTAC3 4d9a0556-b68f-4487-ada6-7909db5d3e88 e8df2a60a50726cd0d820deadffe7504 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor"} -C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor CPT0293570006 c5c81116-8317-4cbd-89c7-d189c6bd58d5_wxs_gdc_realn.bam 29534710079 BAM harmonized CPTAC3 349a677b-4595-415c-b4ba-774a966c92c7 72aa2a7252b4732a09b0289d0e32a04e {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor"} -C3N-04687.MethArray.Green.T C3N-04687 GBM Methylation_Array tumor CPT0293640006 204930630082_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a9484bdd-0eac-4a2b-8fdc-e08cf7f19dbe b145ee31fb1af157c4224d8086ad87c5 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor"} -C3N-04687.MethArray.Red.T C3N-04687 GBM Methylation_Array tumor CPT0293640006 204930630082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 be21d657-eedf-4d89-8883-cb7eb242f3f6 077bd220d44cce7bf8eebc72752a790d {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor"} -C3N-04687.miRNA-Seq.S22_L007_R1.T C3N-04687 GBM miRNA-Seq tumor CPT0293640009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACAGTG_S22_L007_R1_001.unaln.bam 208503100 BAM S22_L007_R1 unaligned CPTAC3 2cf5871c-e227-4a62-a47f-4f7b400d3b9f 2f4d1d2017eb4ebd438b63f8b0ee945d {"aliquot_tag": "ALQ_42938b84", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04687.miRNA-Seq.T.hg38 C3N-04687 GBM miRNA-Seq tumor CPT0293640009 7a186112-57f4-4454-8e2b-e1cb78dabdf4_mirnaseq_gdc_realn.bam 228891390 BAM harmonized CPTAC3 f420bc48-fe3b-4717-b2fa-79faed28c2ca ec6cdaca9cf9e6c064182f096b3d0c66 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor"} -C3N-04687.RNA-Seq.chimeric.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.chimeric.gdc_realn.bam 616341390 BAM chimeric harmonized CPTAC3 5ae2757b-4012-4eca-9163-3e0faae2265f b151c39e6c99350b0d43b89adabcb1a8 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor"} -C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.genomic.gdc_realn.bam 11869610513 BAM genomic harmonized CPTAC3 18d53c42-543f-40cd-a958-3d1a1437b8bc af017e3e462dea9f897a747e104e1331 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor"} -C3N-04687.RNA-Seq.S5_L002_R1.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ S5_L002_R1 unaligned CPTAC3 5813883a-bd76-4717-b554-85107c414177 42954edf1fc37e2a6a1190c29ca3837d {"aliquot_tag": "ALQ_42938b84", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04687.RNA-Seq.S5_L002_R2.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ S5_L002_R2 unaligned CPTAC3 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 77cd363131876e03e6634aa1c5909f27 {"aliquot_tag": "ALQ_42938b84", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04687.RNA-Seq.transcriptome.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.transcriptome.gdc_realn.bam 12890932666 BAM transcriptome harmonized CPTAC3 a54a1eb3-b948-4cbd-ba01-813bd331e9f8 31f74ebe6dcff3e540e42e4e97713666 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor"} -C3N-04687.WGS.N C3N-04687 GBM WGS blood_normal CPT0293690002 CPT0293690002.WholeGenome.RP-2158.bam 27529329254 BAM aligned CPTAC3 5168a4c1-d7bf-4315-9416-7ca03219f455 676212b8c52b9fca93a8b6f6abd90b97 {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04687.WGS.N.hg38 C3N-04687 GBM WGS blood_normal CPT0293690002 89cc8a15-7059-48f4-b028-36add2ef000e_wgs_gdc_realn.bam 82172701135 BAM harmonized CPTAC3 a12ebbd1-84fa-441b-8b7e-019cbde83059 cf407141f3a1121e2ce622324dadb69b {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04687.WGS.T C3N-04687 GBM WGS tumor CPT0293640006 CPT0293640006.WholeGenome.RP-2158.bam 24215834475 BAM aligned CPTAC3 78c0a239-fa60-437f-9f48-deed8e1bdf75 329a9eaead33c085c72a82db6584a92a {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor"} -C3N-04687.WGS.T.hg38 C3N-04687 GBM WGS tumor CPT0293640006 8d5b75ae-e777-4df1-8837-4a71d060d681_wgs_gdc_realn.bam 70782620714 BAM harmonized CPTAC3 0e2b89fc-c483-476d-96f9-d0dcdbcec179 b77968a4dabbd1b8581bac287654c362 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor"} -C3N-04687.WXS.N C3N-04687 GBM WXS blood_normal CPT0293690002 CPT0293690002.WholeExome.RP-1303.bam 25262694720 BAM aligned CPTAC3 201962bb-0a08-42ae-bbeb-70d26f8f2168 a0c1563bf195301a45abb81d022b7c02 {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04687.WXS.N.hg38 C3N-04687 GBM WXS blood_normal CPT0293690002 89cc8a15-7059-48f4-b028-36add2ef000e_wxs_gdc_realn.bam 34658403577 BAM harmonized CPTAC3 24cdf0cb-e910-4e7b-854d-88a58b9fc6cd 9f3cb128be754dc46090c14466277e77 {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04687.WXS.T C3N-04687 GBM WXS tumor CPT0293640006 CPT0293640006.WholeExome.RP-1303.bam 18900010222 BAM aligned CPTAC3 612866d9-7349-4e34-a5df-b9b8974ceba4 f7ebadc8f54cfecfd93a5923b4b351a8 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor"} -C3N-04687.WXS.T.hg38 C3N-04687 GBM WXS tumor CPT0293640006 8d5b75ae-e777-4df1-8837-4a71d060d681_wxs_gdc_realn.bam 25765521874 BAM harmonized CPTAC3 56d88fed-d037-4804-a093-b009c714bd85 540e21342eab6e05f6fc70fef7e7b119 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor"} -C3N-04688.RNA-Seq.chimeric.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.chimeric.gdc_realn.bam 82810764 BAM chimeric harmonized CPTAC3 85686f00-7d26-49b8-b0bb-8f992536671d 8e3e8e44b37daf3e2e3b791d576de1b0 {"aliquot_tag": "ALQ_8a5fa39b", "gdc_sample_type": "Primary Tumor"} -C3N-04688.RNA-Seq.genomic.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.genomic.gdc_realn.bam 7562646517 BAM genomic harmonized CPTAC3 22fa1665-8d52-4b87-88e5-bf69f7652fad 12e28695303067b58648cc77169a984d {"aliquot_tag": "ALQ_8a5fa39b", "gdc_sample_type": "Primary Tumor"} -C3N-04688.RNA-Seq.S6_R1.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R1_001.fastq.gz 4495689608 FASTQ S6_R1 unaligned CPTAC3 3dfcb302-6978-4bfa-9986-d63485bffa00 141d3074cd55b2046be94e1da8f5e1d2 {"aliquot_tag": "ALQ_8a5fa39b", "sample": "S6", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04688.RNA-Seq.S6_R2.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R2_001.fastq.gz 4665353178 FASTQ S6_R2 unaligned CPTAC3 f4aee9ea-7564-4b34-b48a-6b075d30ac05 f540d35465674bb365a544283e840565 {"aliquot_tag": "ALQ_8a5fa39b", "sample": "S6", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04688.RNA-Seq.transcriptome.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.transcriptome.gdc_realn.bam 6471833677 BAM transcriptome harmonized CPTAC3 e1abff5c-441d-4d5c-8a32-544f168c61b5 358ea9b57f2d8b9a0e026bddda0d2bb6 {"aliquot_tag": "ALQ_8a5fa39b", "gdc_sample_type": "Primary Tumor"} -C3N-04689.RNA-Seq.chimeric.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.chimeric.gdc_realn.bam 102857264 BAM chimeric harmonized CPTAC3 54a5a599-d3a6-44b6-8aa3-661d4f14df2d 8d5373f0180e57539bf3702fba04d385 {"aliquot_tag": "ALQ_3cbb9af4", "gdc_sample_type": "Primary Tumor"} -C3N-04689.RNA-Seq.genomic.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.genomic.gdc_realn.bam 5977554989 BAM genomic harmonized CPTAC3 8bf77e51-8f61-4c7b-aa1c-837c8d0ed78c 88fc3fd2ef2b99d718cc39c29191c043 {"aliquot_tag": "ALQ_3cbb9af4", "gdc_sample_type": "Primary Tumor"} -C3N-04689.RNA-Seq.S54_R1.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R1_001.fastq.gz 3966281016 FASTQ S54_R1 unaligned CPTAC3 b6b7d197-cd63-443b-94a4-6bbf901f93b9 574e76ed5540a49687018d17a6b59d8c {"aliquot_tag": "ALQ_3cbb9af4", "sample": "S54", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04689.RNA-Seq.S54_R2.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R2_001.fastq.gz 4071577972 FASTQ S54_R2 unaligned CPTAC3 380cf5f9-c798-449a-953f-f746c14a527c 0301c71e8650587f8c2cb0acbb885f17 {"aliquot_tag": "ALQ_3cbb9af4", "sample": "S54", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04689.RNA-Seq.transcriptome.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.transcriptome.gdc_realn.bam 4742032571 BAM transcriptome harmonized CPTAC3 2e231368-70eb-43d8-ab8c-d2e3beb8ada0 756d7cf9cf563dbe193de4652222fb9f {"aliquot_tag": "ALQ_3cbb9af4", "gdc_sample_type": "Primary Tumor"} -C3N-04691.MethArray.Green.T C3N-04691 GBM Methylation_Array tumor CPT0293770006 204372030087_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e6ee78a8-883c-4e1e-b06a-fd6adba317a5 c2c7fec8024b412ccdac55b4483d1280 {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor"} -C3N-04691.MethArray.Red.T C3N-04691 GBM Methylation_Array tumor CPT0293770006 204372030087_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 c93601c7-11a6-48c9-abd0-438d65809d42 164f5511997b9881a45830151f569c28 {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor"} -C3N-04691.miRNA-Seq.S34_L008_R1.T C3N-04691 GBM miRNA-Seq tumor CPT0293770009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATGGC_S34_L008_R1_001.unaln.bam 281130791 BAM S34_L008_R1 unaligned CPTAC3 6d5df380-8272-4933-856f-c8c14cddf5ab 73e7bbc759479d193fc3c9f07a9bd616 {"aliquot_tag": "ALQ_ce6f22f1", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04691.miRNA-Seq.T.hg38 C3N-04691 GBM miRNA-Seq tumor CPT0293770009 b802112b-e57a-481c-b292-a6560fb62db4_mirnaseq_gdc_realn.bam 306479091 BAM harmonized CPTAC3 4f19e4ce-59e2-4562-a3a7-d871d430abbe 7ec6c46dc0f0105dd46e9845cf1ef9eb {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor"} -C3N-04691.RNA-Seq.chimeric.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.chimeric.gdc_realn.bam 22719015 BAM chimeric harmonized CPTAC3 16bdd14b-9643-46a7-aa41-fae95268c477 4dddc0c1c446da18173409cd0c54f828 {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor"} -C3N-04691.RNA-Seq.genomic.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.genomic.gdc_realn.bam 7183697291 BAM genomic harmonized CPTAC3 771e6bd6-9373-44f7-b866-1caab8fa613c 75df748b1cbbc31a321aa03eb1c8a349 {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor"} -C3N-04691.RNA-Seq.S12_L004_R1.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ S12_L004_R1 unaligned CPTAC3 8b611a73-3ec3-456e-95fd-6f25ee476c28 b987b9f75087bfbda8af2a1dc31860fe {"aliquot_tag": "ALQ_ce6f22f1", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04691.RNA-Seq.S12_L004_R2.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ S12_L004_R2 unaligned CPTAC3 0a016bfe-4773-486e-be6e-af9ed353c9b5 b0f5d363b67f3f3bace1ca7b157c7bc9 {"aliquot_tag": "ALQ_ce6f22f1", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04691.RNA-Seq.transcriptome.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.transcriptome.gdc_realn.bam 9423599268 BAM transcriptome harmonized CPTAC3 dc240c9c-4410-49f6-9a0b-7dc80b3b8dce d7bf4a982584ab518bf40089defbc6a9 {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor"} -C3N-04691.WGS.N C3N-04691 GBM WGS blood_normal CPT0293790002 CPT0293790002.WholeGenome.RP-2158.bam 22737036630 BAM aligned CPTAC3 9861bacf-115c-4f88-8afd-217c8e872070 9824c46fe95cd1ae4f8c42efc543be38 {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal"} -C3N-04691.WGS.N.hg38 C3N-04691 GBM WGS blood_normal CPT0293790002 cdd22aae-ff9d-430d-a275-1da5f8befaab_wgs_gdc_realn.bam 69525083202 BAM harmonized CPTAC3 7a1f5582-fc6d-4c7f-9da4-b605a67108ea 912fe36f73fd4c48ce1501cf7a2ab55a {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal"} -C3N-04691.WGS.T C3N-04691 GBM WGS tumor CPT0293770006 CPT0293770006.WholeGenome.RP-2158.bam 26615436611 BAM aligned CPTAC3 5b36d3a4-75cd-4f1d-bd42-a4465f2d1aaf 566348b7e5d3b25a08530ead22d3ce5c {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor"} -C3N-04691.WGS.T.hg38 C3N-04691 GBM WGS tumor CPT0293770006 c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wgs_gdc_realn.bam 79639650961 BAM harmonized CPTAC3 705077f1-277d-46d7-85d6-3248b1d8a3db ea67330b5b01823f3f65598678e8b479 {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor"} -C3N-04691.WXS.N C3N-04691 GBM WXS blood_normal CPT0293790002 CPT0293790002.WholeExome.RP-1303.bam 27923809616 BAM aligned CPTAC3 0140fcd4-d417-4363-9558-629a455e602f c124f5265b86601eb2d0b896fa9d4928 {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal"} -C3N-04691.WXS.N.hg38 C3N-04691 GBM WXS blood_normal CPT0293790002 cdd22aae-ff9d-430d-a275-1da5f8befaab_wxs_gdc_realn.bam 37966628766 BAM harmonized CPTAC3 c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3 1a3b0bac4482a34ddb52f33c1c5f36f7 {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal"} -C3N-04691.WXS.T C3N-04691 GBM WXS tumor CPT0293770006 CPT0293770006.WholeExome.RP-1303.bam 23083766040 BAM aligned CPTAC3 e22398a1-ddd9-4518-b3c2-6b3e978a87d4 d70e6cf1dbe1b3d2dd532f974945e36d {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor"} -C3N-04691.WXS.T.hg38 C3N-04691 GBM WXS tumor CPT0293770006 c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wxs_gdc_realn.bam 32312688782 BAM harmonized CPTAC3 4cfd40cf-be18-4ded-aafc-26e3705fb482 325e14c334fc8958d9865ffce49692cb {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor"} -C3N-04693.MethArray.Green.T C3N-04693 GBM Methylation_Array tumor CPT0293800006 204367460011_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dc3cfb75-f88f-438e-aec1-92a275ef9172 55a91915bb7a9bcd8e658d84f3530a91 {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor"} -C3N-04693.MethArray.Red.T C3N-04693 GBM Methylation_Array tumor CPT0293800006 204367460011_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 9dd8897c-937f-4c68-9ed1-5150a59bbb16 854fbe168baaf4ef8f0407977f1ac04b {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor"} -C3N-04693.miRNA-Seq.S1_L008_R1.T C3N-04693 GBM miRNA-Seq tumor CPT0293800009 200224_UNC31-K00269_0267_AHC722BBXY_ATCACG_S1_L008_R1_001.unaln.bam 220351053 BAM S1_L008_R1 unaligned CPTAC3 81b73edc-26ae-4642-9dd0-84e7340fd485 9d6e3626af40742d214c9e36908398d8 {"aliquot_tag": "ALQ_8d194c34", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04693.miRNA-Seq.T.hg38 C3N-04693 GBM miRNA-Seq tumor CPT0293800009 307ae310-cd8b-4c18-aad1-2953d96267b7_mirnaseq_gdc_realn.bam 245401329 BAM harmonized CPTAC3 c2efe5e4-452b-4071-a687-3f86307753dd 94d97309aab24a056fb28904502c2cb8 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor"} -C3N-04693.RNA-Seq.chimeric.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.chimeric.gdc_realn.bam 52422897 BAM chimeric harmonized CPTAC3 4a6155a0-ca05-4ec1-ad7b-27e3f43dc7c3 f23d36c5108e3a9e0eb25e534d49c728 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor"} -C3N-04693.RNA-Seq.genomic.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.genomic.gdc_realn.bam 11331977929 BAM genomic harmonized CPTAC3 864dd29c-c2f7-4d60-840f-ca4b51a80cb1 db1d92f0913d807711266a6226040020 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor"} -C3N-04693.RNA-Seq.S1_L001_R1.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ S1_L001_R1 unaligned CPTAC3 95e19f64-f558-4704-b020-3cc06287e7f4 ebc4a382c65532a43ce9ee0e2293f80d {"aliquot_tag": "ALQ_8d194c34", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04693.RNA-Seq.S1_L001_R2.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ S1_L001_R2 unaligned CPTAC3 7144248c-c457-48a8-bd20-e742f014d9bd f527f436ba9c7a431eee4a2d0727cd91 {"aliquot_tag": "ALQ_8d194c34", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04693.RNA-Seq.transcriptome.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.transcriptome.gdc_realn.bam 15477885391 BAM transcriptome harmonized CPTAC3 96aeadbf-ce1d-471e-a984-b066d67d9b84 ffe13e00d08b739005602b073ff2d067 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor"} -C3N-04693.WGS.N C3N-04693 GBM WGS blood_normal CPT0293830004 CPT0293830004.WholeGenome.RP-2158.bam 21452981251 BAM aligned CPTAC3 7c393eae-279f-43bc-abec-5f4e84caa34c 5c1d1dcaa658498d07c25ca230c99c73 {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal"} -C3N-04693.WGS.N.hg38 C3N-04693 GBM WGS blood_normal CPT0293830004 b996ab8e-ae14-42ed-ac60-b74d932c0460_wgs_gdc_realn.bam 63795296473 BAM harmonized CPTAC3 de5ee410-fb28-490e-81a9-60d05e4039f8 cf9ca1f955a3d39f484b2b8c719ccdbe {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal"} -C3N-04693.WGS.T C3N-04693 GBM WGS tumor CPT0293800006 CPT0293800006.WholeGenome.RP-2158.bam 29358675954 BAM aligned CPTAC3 3c2a3429-a00b-4aa5-958d-bdcadca1ac38 61683978f1356b0ec83cbd1ab98684ec {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor"} -C3N-04693.WGS.T.hg38 C3N-04693 GBM WGS tumor CPT0293800006 27f4dc0c-6231-4650-a00e-9ccc4e942c89_wgs_gdc_realn.bam 86972627335 BAM harmonized CPTAC3 ccc9794f-4efc-4284-8b1c-2cb5fc33e957 2bec7b18592d28cbaeaf92aed7616d4f {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor"} -C3N-04693.WXS.N C3N-04693 GBM WXS blood_normal CPT0293830004 CPT0293830004.WholeExome.RP-1303.bam 30028625002 BAM aligned CPTAC3 03043151-b2c5-4e51-b2ce-677ad67c8b23 063ca8487e630fc42dd91e1cd782d50e {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal"} -C3N-04693.WXS.N.hg38 C3N-04693 GBM WXS blood_normal CPT0293830004 b996ab8e-ae14-42ed-ac60-b74d932c0460_wxs_gdc_realn.bam 40597818463 BAM harmonized CPTAC3 6fb6bf47-d501-4858-ba49-6e2cd516474a fdce0f0236fbcfbabd942e8ed0a2b0e1 {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal"} -C3N-04693.WXS.T C3N-04693 GBM WXS tumor CPT0293800006 CPT0293800006.WholeExome.RP-1303.bam 48569729300 BAM aligned CPTAC3 3791b6fc-e492-439c-bf45-0095fcd1a11f 948fa883cd45db3a29f88947fd354182 {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor"} -C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor CPT0293800006 27f4dc0c-6231-4650-a00e-9ccc4e942c89_wxs_gdc_realn.bam 66369099884 BAM harmonized CPTAC3 e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e f6f4cfcc6be0b8fdc2073a9c6ce23d7a {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor"} -C3N-04695.MethArray.Green.T C3N-04695 GBM Methylation_Array tumor CPT0293870006 204930630111_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 566ed0bc-6a80-4eca-9e7c-c1b514e7f66e 0c75d78c253fbe2b25978c382278c407 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor"} -C3N-04695.MethArray.Red.T C3N-04695 GBM Methylation_Array tumor CPT0293870006 204930630111_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 bb5c6094-2ff4-4b49-8acd-a64c53d38105 2f9361c00e031ed99a98c29eb65e3947 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor"} -C3N-04695.miRNA-Seq.S31_L007_R1.T C3N-04695 GBM miRNA-Seq tumor CPT0293870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GCCAAT_S31_L007_R1_001.unaln.bam 254636701 BAM S31_L007_R1 unaligned CPTAC3 116a4933-a918-4b62-be94-f8dd406d55e0 2bad041d5acecccb2f27be5e41b4b947 {"aliquot_tag": "ALQ_3f399024", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04695.miRNA-Seq.T.hg38 C3N-04695 GBM miRNA-Seq tumor CPT0293870009 8ffc0ec3-0cbc-45a3-bf2f-978b97a6cf9a_mirnaseq_gdc_realn.bam 278835217 BAM harmonized CPTAC3 b96ad40b-b6ee-425e-b039-0b7b5f79c219 3412bd76feaf0f516c65b36f468f00a4 {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor"} -C3N-04695.RNA-Seq.chimeric.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.chimeric.gdc_realn.bam 545947210 BAM chimeric harmonized CPTAC3 e1ea7fc3-4615-4e8e-b377-e666128bf67e 1e0a7fe537acfed9e1f8b47d10300123 {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor"} -C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.genomic.gdc_realn.bam 9691045980 BAM genomic harmonized CPTAC3 2fb3d725-8f6c-477e-a9bf-b2e58ae5fa98 c4b001ed1db437200c385ceafac4237f {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor"} -C3N-04695.RNA-Seq.S6_L002_R1.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ S6_L002_R1 unaligned CPTAC3 192aec81-2351-4e27-88b7-36549fbf6d8d 72a7715debc655f045322ddaa760a31c {"aliquot_tag": "ALQ_3f399024", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04695.RNA-Seq.S6_L002_R2.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ S6_L002_R2 unaligned CPTAC3 37a18500-3aa6-42ad-99ed-e1c041194c48 147f923d871392c37cbf9babe53dbf9f {"aliquot_tag": "ALQ_3f399024", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04695.RNA-Seq.transcriptome.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.transcriptome.gdc_realn.bam 11250955216 BAM transcriptome harmonized CPTAC3 cf1e6599-68b5-4420-b24e-7da566bf9acd 1754110c08e54978c49b3823e4c41c26 {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor"} -C3N-04695.WGS.N C3N-04695 GBM WGS blood_normal CPT0293890002 CPT0293890002.WholeGenome.RP-2158.bam 22732109080 BAM aligned CPTAC3 6adf632a-fedb-456f-aad9-67b5c4cd8a7a 829513d0bef0cdc6e691e191e7eccb84 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04695.WGS.N.hg38 C3N-04695 GBM WGS blood_normal CPT0293890002 dc406b2d-e0c8-49bf-b1b1-7e1929833382_wgs_gdc_realn.bam 66383764365 BAM harmonized CPTAC3 fab7e8e1-714b-4798-9ef7-1612394e55d5 604d52502306f04af036456747113049 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04695.WGS.T C3N-04695 GBM WGS tumor CPT0293870006 CPT0293870006.WholeGenome.RP-2158.bam 27471116027 BAM aligned CPTAC3 6dd2b329-91e9-4246-ba46-b15996db89b0 0b1fcd14a9a7e467ea2bc27ff06adda0 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor"} -C3N-04695.WGS.T.hg38 C3N-04695 GBM WGS tumor CPT0293870006 d7f885b4-11bb-4eef-81bf-74643b30908c_wgs_gdc_realn.bam 83658438448 BAM harmonized CPTAC3 1892aa40-a858-4f1d-a3ee-24e84b7d6216 eabdc34d7bf77a2488b9292881fb8c34 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor"} -C3N-04695.WXS.N C3N-04695 GBM WXS blood_normal CPT0293890002 CPT0293890002.WholeExome.RP-1303.bam 23131222441 BAM aligned CPTAC3 af079cca-f58b-42c0-94d4-28e5d16b9a3e a390bf9e8a30b10b5640a39f9f0f1fa3 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04695.WXS.N.hg38 C3N-04695 GBM WXS blood_normal CPT0293890002 dc406b2d-e0c8-49bf-b1b1-7e1929833382_wxs_gdc_realn.bam 32304960170 BAM harmonized CPTAC3 3bbdc094-e064-4c89-afec-bf59940cfe16 fcafd8a1cf75b235faae1655e8383ad6 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal"} -C3N-04695.WXS.T C3N-04695 GBM WXS tumor CPT0293870006 CPT0293870006.WholeExome.RP-1303.bam 24573077650 BAM aligned CPTAC3 b4fb3775-938a-481e-a1f6-8c2fb0ff2226 4fc4b6dfa572c14b7962cca353507bda {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor"} -C3N-04695.WXS.T.hg38 C3N-04695 GBM WXS tumor CPT0293870006 d7f885b4-11bb-4eef-81bf-74643b30908c_wxs_gdc_realn.bam 33758326958 BAM harmonized CPTAC3 f792ee2a-c245-4f1f-9ffc-6a9d7178a770 9cc648049f5b1803d9b0bb613f57435a {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor"} -C3N-04701.MethArray.Green.A C3N-04701 LSCC Methylation_Array tissue_normal CPT0293910006 204372030071_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66b97b36-668e-4403-8ee6-536d33bb103e a5217cbd2216c9ca96ec6a77659d953c {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.MethArray.Green.T C3N-04701 LSCC Methylation_Array tumor CPT0293900006 204367470124_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 21a0ab69-9a87-4632-be60-f3d49599d48f 3e2c4a7eb2a995e70159a40073826de0 {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor"} -C3N-04701.MethArray.Red.A C3N-04701 LSCC Methylation_Array tissue_normal CPT0293910006 204372030071_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 cb6ae2a2-bc8c-4c3a-bab2-cbc8aabd0daa aa4fc0f7cbf86b8d40a59aaf54829bd0 {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.MethArray.Red.T C3N-04701 LSCC Methylation_Array tumor CPT0293900006 204367470124_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 f0f3926b-155f-45bb-b852-beff8ce019ac e0a7a89070c0864619d2bd951d8f2c8e {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor"} -C3N-04701.miRNA-Seq.A.hg38 C3N-04701 LSCC miRNA-Seq tissue_normal CPT0293910009 19a5f0a4-547c-44f3-bb29-9ea1a7da6e18_mirnaseq_gdc_realn.bam 264517897 BAM harmonized CPTAC3 f130baa5-9fa6-43f2-9a93-03c16aa58ce8 1fcc290a73e354a615777b127e3cbeca {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.miRNA-Seq.S23_L001_R1.A C3N-04701 LSCC miRNA-Seq tissue_normal CPT0293910009 200325_UNC31-K00269_0272_AHHC2NBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 241055591 BAM S23_L001_R1 unaligned CPTAC3 bfafa02e-f678-49ff-bf47-255455ca6fca 326abf3c7dc4cd679d71878a2de6c223 {"aliquot_tag": "ALQ_7b25b621", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.miRNA-Seq.S7_L008_R1.T C3N-04701 LSCC miRNA-Seq tumor CPT0293900009 200224_UNC31-K00269_0267_AHC722BBXY_CAGATC_S7_L008_R1_001.unaln.bam 222982001 BAM S7_L008_R1 unaligned CPTAC3 b6e6e43a-7bcf-4366-b957-c2f084445703 be347253d6799a052f916aebabe5e5fe {"aliquot_tag": "ALQ_46459f91", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04701.miRNA-Seq.T.hg38 C3N-04701 LSCC miRNA-Seq tumor CPT0293900009 4e931765-e13d-42d2-ab5a-6c2535bf7202_mirnaseq_gdc_realn.bam 242228306 BAM harmonized CPTAC3 b085f6cd-7cbb-4030-9071-44462b03cd5b e628d0e52ec171481f046e774aa3dc18 {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor"} -C3N-04701.RNA-Seq.chimeric.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.chimeric.gdc_realn.bam 72376885 BAM chimeric harmonized CPTAC3 cf39f0eb-35e4-4bf6-ae94-c184a800da12 5dcae9a9f986c5029594736ed255900f {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.RNA-Seq.chimeric.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.chimeric.gdc_realn.bam 44157595 BAM chimeric harmonized CPTAC3 3f773d9a-8ef6-4cd6-880b-000e871a7f6f b22c4d3558f79b32773dd0aaa5887413 {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor"} -C3N-04701.RNA-Seq.genomic.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.genomic.gdc_realn.bam 8985496669 BAM genomic harmonized CPTAC3 e7fb4a2c-cb17-448b-850e-87f082f80bc5 8a67b306ea3ad4eb5b6b13b54d28414c {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.RNA-Seq.genomic.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.genomic.gdc_realn.bam 9359265956 BAM genomic harmonized CPTAC3 75472f2f-b05c-435f-8bd1-34a1c6659d95 5a48bad70f7ea2522a6468576231891f {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor"} -C3N-04701.RNA-Seq.S31_L008_R1.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R1_001.fastq.gz 4704619016 FASTQ S31_L008_R1 unaligned CPTAC3 b03b01be-db81-4ec8-b893-b790fcf1e565 11f722aed074c49688c3b841acdf82a3 {"aliquot_tag": "ALQ_7b25b621", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.RNA-Seq.S31_L008_R2.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R2_001.fastq.gz 4833254640 FASTQ S31_L008_R2 unaligned CPTAC3 b5b589c7-bfd5-4bcd-ab33-1fdc83c57369 1f44389ee5686e091e2bd94020d26866 {"aliquot_tag": "ALQ_7b25b621", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.RNA-Seq.S7_L002_R1.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R1_001.fastq.gz 4667721275 FASTQ S7_L002_R1 unaligned CPTAC3 57aa2d40-9195-48bf-b4a7-0b78a10f0d63 23558d866156b8caebc26d3d81327f8a {"aliquot_tag": "ALQ_46459f91", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04701.RNA-Seq.S7_L002_R2.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R2_001.fastq.gz 4981914719 FASTQ S7_L002_R2 unaligned CPTAC3 5b256c5e-2b30-4b00-8625-fe4cbd0945ff ab036cbf86edd457647abdcb2f334780 {"aliquot_tag": "ALQ_46459f91", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04701.RNA-Seq.transcriptome.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.transcriptome.gdc_realn.bam 12306895545 BAM transcriptome harmonized CPTAC3 ee570fa8-55a6-46bd-ab59-edae8b88eb19 4196028eba7457d7dea06abe35598149 {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.RNA-Seq.transcriptome.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.transcriptome.gdc_realn.bam 12964416634 BAM transcriptome harmonized CPTAC3 8fda6a29-e85e-4d48-b93c-4c24cd8160a8 b61ca60491105ea99aa1dd249b4f4f08 {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor"} -C3N-04701.WGS.N C3N-04701 LSCC WGS blood_normal CPT0293940002 CPT0293940002.WholeGenome.RP-2158.bam 26367282623 BAM aligned CPTAC3 a5aff2c6-4bad-4e55-a2ae-95b3a1b565ce 2503592f22bd4e4a6c9eb2e7cbf6d0e4 {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal"} -C3N-04701.WGS.N.hg38 C3N-04701 LSCC WGS blood_normal CPT0293940002 dea222cc-4710-482a-b1b9-12cfc82f8bb2_wgs_gdc_realn.bam 78569442278 BAM harmonized CPTAC3 ff0ab924-09a0-4169-af5a-304760c894ed 523eac379f87f7c22d7c3d14839a504a {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal"} -C3N-04701.WGS.T C3N-04701 LSCC WGS tumor CPT0293900006 CPT0293900006.WholeGenome.RP-2158.bam 20944610111 BAM aligned CPTAC3 ee31857c-0abf-46b9-a02d-8f2744756492 44cbe31ff5815cab8cfdae4fb8c76e30 {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor"} -C3N-04701.WGS.T.hg38 C3N-04701 LSCC WGS tumor CPT0293900006 a5c1bd98-d6d5-4c56-9678-10c596b60c35_wgs_gdc_realn.bam 61905934854 BAM harmonized CPTAC3 5305bb2a-ddee-4206-92c2-f11f72ce674c 19866b70825ad9fcb7639dffe3a1e30b {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor"} -C3N-04701.WXS.A C3N-04701 LSCC WXS tissue_normal CPT0293910006 CPT0293910006.WholeExome.RP-1303.bam 22600989093 BAM aligned CPTAC3 91103f44-98d1-4887-9812-f22ba93822dc c9fb7d78392c105f686460d2c3e7f562 {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.WXS.A.hg38 C3N-04701 LSCC WXS tissue_normal CPT0293910006 09db81b4-1161-45bd-ae0a-c32ef678d229_wxs_gdc_realn.bam 30538044978 BAM harmonized CPTAC3 a140f15b-b37a-4fd4-9242-5a9e598a540e a74ea05aeb97a53296c64d493e1a9960 {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04701.WXS.N C3N-04701 LSCC WXS blood_normal CPT0293940002 CPT0293940002.WholeExome.RP-1303.bam 23155972575 BAM aligned CPTAC3 87b838d9-7fff-4c39-932e-d48254c11488 9e1c373586687c8044649ac6f2201963 {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal"} -C3N-04701.WXS.N.hg38 C3N-04701 LSCC WXS blood_normal CPT0293940002 dea222cc-4710-482a-b1b9-12cfc82f8bb2_wxs_gdc_realn.bam 32040419742 BAM harmonized CPTAC3 1c58affb-da1d-4b10-9c6a-6803194220bb 7615fd53eed6c425f5862a4b637b16bb {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal"} -C3N-04701.WXS.T C3N-04701 LSCC WXS tumor CPT0293900006 CPT0293900006.WholeExome.RP-1303.bam 19440348653 BAM aligned CPTAC3 8f8f06d4-9072-4a56-93af-f0e315413f67 8393e5004d89e59c0f3d1f83a776081f {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor"} -C3N-04701.WXS.T.hg38 C3N-04701 LSCC WXS tumor CPT0293900006 a5c1bd98-d6d5-4c56-9678-10c596b60c35_wxs_gdc_realn.bam 27388540159 BAM harmonized CPTAC3 e6c146b0-db16-45a0-90ef-d5755873522c c26811f5f908694e3f51e255457ca0b5 {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor"} -C3N-04708.RNA-Seq.chimeric.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.chimeric.gdc_realn.bam 150549078 BAM chimeric harmonized CPTAC3 e4dcdaa1-b79b-4e22-8553-b69009749a4a d7635a73ec9d7ee474ea1c325913e658 {"aliquot_tag": "ALQ_8e9b46e4", "gdc_sample_type": "Primary Tumor"} -C3N-04708.RNA-Seq.genomic.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.genomic.gdc_realn.bam 8876759047 BAM genomic harmonized CPTAC3 f9fc5141-0536-4310-ac30-013629d2eee5 fe45f02851dca62f3945238867e02739 {"aliquot_tag": "ALQ_8e9b46e4", "gdc_sample_type": "Primary Tumor"} -C3N-04708.RNA-Seq.S78_R1.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R1_001.fastq.gz 5314900702 FASTQ S78_R1 unaligned CPTAC3 bcbeeb17-f994-4a13-b86e-162d6b0c4145 e9696d462410148b45b5f26a0b08a87f {"aliquot_tag": "ALQ_8e9b46e4", "sample": "S78", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04708.RNA-Seq.S78_R2.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R2_001.fastq.gz 5524224361 FASTQ S78_R2 unaligned CPTAC3 aef4958a-80ca-46c1-aeb4-942f06d6550b e244ef801796022c3e18ef2a0ff020cd {"aliquot_tag": "ALQ_8e9b46e4", "sample": "S78", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04708.RNA-Seq.transcriptome.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.transcriptome.gdc_realn.bam 5804266018 BAM transcriptome harmonized CPTAC3 fb7a30d2-2dc2-435a-985f-e4c114f2f687 b8b31d45ddbef40b807a49c27243ffed {"aliquot_tag": "ALQ_8e9b46e4", "gdc_sample_type": "Primary Tumor"} -C3N-04713.MethArray.Green.T C3N-04713 LSCC Methylation_Array tumor CPT0313120006 204367490029_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1bd8fef2-ccc4-4c6e-8d4b-04ad094720a3 e554ef86789865be10aacc7e9b5dafae {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor"} -C3N-04713.MethArray.Red.T C3N-04713 LSCC Methylation_Array tumor CPT0313120006 204367490029_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 1dbe1684-18a0-4adc-ae51-e4cde5c0571c 511a036ef1935f0ed46ed5e836ce8cf5 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor"} -C3N-04713.miRNA-Seq.S12_L008_R1.T C3N-04713 LSCC miRNA-Seq tumor CPT0313120009 200224_UNC31-K00269_0267_AHC722BBXY_CTTGTA_S12_L008_R1_001.unaln.bam 230288131 BAM S12_L008_R1 unaligned CPTAC3 ec558bf0-e1bc-4bcc-9b1c-bc4a92624846 f68672e2c21ca79c6a5938aa404ab012 {"aliquot_tag": "ALQ_1448416a", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04713.miRNA-Seq.T.hg38 C3N-04713 LSCC miRNA-Seq tumor CPT0313120009 9894658b-47b8-4e37-85af-90fd8f09d0fa_mirnaseq_gdc_realn.bam 264922655 BAM harmonized CPTAC3 a68a15f4-733e-48d1-ad81-d21e9c20ff95 34adab5e5b45e0e6c3eadcc6d429ce41 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor"} -C3N-04713.RNA-Seq.chimeric.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.chimeric.gdc_realn.bam 25349719 BAM chimeric harmonized CPTAC3 f9126ebf-5827-4cb3-9efe-51554dbeec21 6d0de03df135d1cbb282fb2a0d4f2891 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor"} -C3N-04713.RNA-Seq.genomic.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.genomic.gdc_realn.bam 6509753911 BAM genomic harmonized CPTAC3 375a34f0-bf33-4acb-8a96-7ebad8739261 460fad573fbb4959c61b0d1034d04d16 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor"} -C3N-04713.RNA-Seq.S12_L003_R1.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R1_001.fastq.gz 3134777188 FASTQ S12_L003_R1 unaligned CPTAC3 43d99717-abff-4560-9f61-c08b6ad51e3c a2fd337c2f186558dba29c41bcbd3c21 {"aliquot_tag": "ALQ_1448416a", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04713.RNA-Seq.S12_L003_R2.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R2_001.fastq.gz 3376812959 FASTQ S12_L003_R2 unaligned CPTAC3 8e7a02ce-e64b-4058-89be-1e8bffab56b3 5bf32b14eb8341d3dcef56d5a9a18d15 {"aliquot_tag": "ALQ_1448416a", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04713.RNA-Seq.transcriptome.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.transcriptome.gdc_realn.bam 8337734649 BAM transcriptome harmonized CPTAC3 ee1f334d-221b-4e5d-a6a0-66bd14921404 f65f1a3002677cf0acc6e7971d8b42f5 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor"} -C3N-04713.WGS.N C3N-04713 LSCC WGS blood_normal CPT0313130002 CPT0313130002.WholeGenome.RP-2158.bam 23276517655 BAM aligned CPTAC3 7a2bb22e-a421-459d-ac87-babf1cbd4c70 8498886175fdaf22c554ea90796b9c7c {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal"} -C3N-04713.WGS.N.hg38 C3N-04713 LSCC WGS blood_normal CPT0313130002 abcb9f24-8fc3-4847-81c8-9ba7a653708b_wgs_gdc_realn.bam 67710228475 BAM harmonized CPTAC3 fe118dcc-3a00-4479-a4cb-afe06060bf5f 1bcb0fddf572e26d10c14e9a6ff632da {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal"} -C3N-04713.WGS.T C3N-04713 LSCC WGS tumor CPT0313120006 CPT0313120006.WholeGenome.RP-2158.bam 23404441371 BAM aligned CPTAC3 0d21369d-2dc9-4a55-99d8-8492870d4d99 fcf5bcfae633043b8ac059e0791f0a84 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor"} -C3N-04713.WGS.T.hg38 C3N-04713 LSCC WGS tumor CPT0313120006 12d287b2-1cfd-443b-8d67-6b536b763eb1_wgs_gdc_realn.bam 68261205290 BAM harmonized CPTAC3 f3b5fe92-eb38-46c1-a633-55a42207db59 66a7f3ebad7f2398a30f3927e42a66b5 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor"} -C3N-04713.WXS.N C3N-04713 LSCC WXS blood_normal CPT0313130002 CPT0313130002.WholeExome.RP-1303.bam 22118693722 BAM aligned CPTAC3 b4afbb1c-aa24-43ef-b213-5900d9801d8c 942442b51524137571f10604dc96b19d {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal"} -C3N-04713.WXS.N.hg38 C3N-04713 LSCC WXS blood_normal CPT0313130002 abcb9f24-8fc3-4847-81c8-9ba7a653708b_wxs_gdc_realn.bam 29854998588 BAM harmonized CPTAC3 41595fde-387b-487c-8b4e-c2ab932591e4 ab9ed19d70aae9d489c75c74819e64d9 {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal"} -C3N-04713.WXS.T C3N-04713 LSCC WXS tumor CPT0313120006 CPT0313120006.WholeExome.RP-1303.bam 19357417472 BAM aligned CPTAC3 b875dcb8-ba75-4cb9-836b-216481ad1d68 61deef7b6b9085f8cb690fc8834f5851 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor"} -C3N-04713.WXS.T.hg38 C3N-04713 LSCC WXS tumor CPT0313120006 12d287b2-1cfd-443b-8d67-6b536b763eb1_wxs_gdc_realn.bam 26695712376 BAM harmonized CPTAC3 59eb1c45-19a9-4fc2-a7f7-b7849e636b98 6b5d3b775fba6faec274b850763c1a29 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor"} -C3N-04944.MethArray.Green.A C3N-04944 LSCC Methylation_Array tissue_normal CPT0333940006 204930640011_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ac7fcad3-0557-4ad3-b8b7-97629aaf72c6 a680ad424e8824f9ede2950c9fd7cb8b {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.MethArray.Green.T C3N-04944 LSCC Methylation_Array tumor CPT0333920006 204930630078_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 83cc83b3-8ee0-4ca6-b9cb-bb37bf402c36 a9cdd09732a1aa93cfd4cbcf31562d47 {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor"} -C3N-04944.MethArray.Red.A C3N-04944 LSCC Methylation_Array tissue_normal CPT0333940006 204930640011_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 c6b81179-7654-4808-99c9-000c2716906f fa373e35dff22a5b3f1d4b3a260faf67 {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.MethArray.Red.T C3N-04944 LSCC Methylation_Array tumor CPT0333920006 204930630078_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 c28fa442-f460-4e8b-bab1-86ae8cc8c841 7b3b0f8fe5618c7a3af9358e7e517f5f {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor"} -C3N-04944.miRNA-Seq.A.hg38 C3N-04944 LSCC miRNA-Seq tissue_normal CPT0333940008 92129990-191d-467a-a8f2-7a04945dac03_mirnaseq_gdc_realn.bam 291791665 BAM harmonized CPTAC3 824d9621-2178-40ee-b94d-80abf1151377 16d0d750c7363e74ba0be36a3743d1dc {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.miRNA-Seq.S13_L006_R1.T C3N-04944 LSCC miRNA-Seq tumor CPT0333920009 201209_UNC32-K00270_0265_AHJ55WBBXY_GAGTGG_S13_L006_R1_001.unaln.bam 288371914 BAM S13_L006_R1 unaligned CPTAC3 634bdeb0-031c-47e5-b8be-213580b45fe2 6fa4fdfb2ba4fb937bdfc01475878621 {"aliquot_tag": "ALQ_ba3ec47a", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04944.miRNA-Seq.S6_L006_R1.A C3N-04944 LSCC miRNA-Seq tissue_normal CPT0333940008 201209_UNC32-K00270_0265_AHJ55WBBXY_CAACTA_S6_L006_R1_001.unaln.bam 267496423 BAM S6_L006_R1 unaligned CPTAC3 d4767b7c-b3ae-42da-a8c3-9ed5c8bef1f4 99ab9a7993f5880d468033cf65176d22 {"aliquot_tag": "ALQ_4279014c", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.miRNA-Seq.T.hg38 C3N-04944 LSCC miRNA-Seq tumor CPT0333920009 02bcbfb0-e7d7-4baa-9bd4-8c7dbf149b9d_mirnaseq_gdc_realn.bam 315009718 BAM harmonized CPTAC3 49a27b8c-733b-4566-8d1b-c130b4c8fb05 f296131448e6df21456ca488d62a9de1 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor"} -C3N-04944.RNA-Seq.chimeric.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.chimeric.gdc_realn.bam 330307505 BAM chimeric harmonized CPTAC3 e7c9fc22-6f09-4441-8c93-a72625450230 efc84e3056af2914c1e6cb60d4c1bb2a {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.RNA-Seq.chimeric.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.chimeric.gdc_realn.bam 186745784 BAM chimeric harmonized CPTAC3 98777754-78be-4a23-a6ab-fcdab7d11cd3 1be83dcde60c351479455f4aad8e03e2 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor"} -C3N-04944.RNA-Seq.genomic.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.genomic.gdc_realn.bam 7917656092 BAM genomic harmonized CPTAC3 0350165c-1e00-4eda-ac7f-f24e48af7f94 50d9b2bf39722abb060884824ecd8f3a {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.RNA-Seq.genomic.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.genomic.gdc_realn.bam 7620852888 BAM genomic harmonized CPTAC3 f5f864e5-d29b-43f3-86de-03c3cb8588ea 0d689f10b685d5152f805f9cffe17453 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor"} -C3N-04944.RNA-Seq.S13_L004_R1.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3962578034 FASTQ S13_L004_R1 unaligned CPTAC3 c9343469-52cf-4565-80db-90ebdeaa13b4 d6dfa4afa1d3f1d39beedc64d9f9c26f {"aliquot_tag": "ALQ_4279014c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.RNA-Seq.S13_L004_R2.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 4355974170 FASTQ S13_L004_R2 unaligned CPTAC3 2e0be108-dd9a-4c54-818c-00de20ce1c66 99954d8bbbff51ddd79111623f26078b {"aliquot_tag": "ALQ_4279014c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.RNA-Seq.S19_L005_R1.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 4003847490 FASTQ S19_L005_R1 unaligned CPTAC3 ebd08a10-5fbf-4821-8d0e-c4e5579df561 ab5d738f8ab8887cd8d4d8a9a89ae465 {"aliquot_tag": "ALQ_ba3ec47a", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04944.RNA-Seq.S19_L005_R2.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 4301679556 FASTQ S19_L005_R2 unaligned CPTAC3 827f415a-03aa-471c-91a4-82c5a6cf0e1d 83c50218676650d521be00e4ea3e5f4f {"aliquot_tag": "ALQ_ba3ec47a", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04944.RNA-Seq.transcriptome.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.transcriptome.gdc_realn.bam 9580091527 BAM transcriptome harmonized CPTAC3 b24ad7f9-e9ce-4b42-be7a-b353348b5d76 9422c824973bd76b3d2760ce8c9e4e9a {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.RNA-Seq.transcriptome.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.transcriptome.gdc_realn.bam 12366800359 BAM transcriptome harmonized CPTAC3 62843aa8-09e7-495a-9295-aa6e2d6f886a 5009c244c8d338ba0dad41db9b659907 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor"} -C3N-04944.WGS.N C3N-04944 LSCC WGS blood_normal CPT0334010002 CPT0334010002.WholeGenome.RP-2158.bam 24693379292 BAM aligned CPTAC3 38226f1f-13be-4604-b711-f7a39e5e11c8 8d82d28cc92d6df87c8ef6ed679cd9e2 {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal"} -C3N-04944.WGS.N.hg38 C3N-04944 LSCC WGS blood_normal CPT0334010002 b82c5fe0-411c-4b2d-917b-6d67c4c6d750_wgs_gdc_realn.bam 74386232386 BAM harmonized CPTAC3 5e61d33c-775d-485a-8eef-100b9d973938 ae0ff94e6ad5504f67fe853b06737e06 {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal"} -C3N-04944.WGS.T C3N-04944 LSCC WGS tumor CPT0333920006 CPT0333920006.WholeGenome.RP-2158.bam 22296538949 BAM aligned CPTAC3 fe21c720-f9ff-4562-9481-e327cacccfc5 a7a26d400473ad8051ca557dcb35619e {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor"} -C3N-04944.WGS.T.hg38 C3N-04944 LSCC WGS tumor CPT0333920006 6e1a8721-f8d3-4202-b715-d5a8cfd3a3c3_wgs_gdc_realn.bam 64229198132 BAM harmonized CPTAC3 f6136b10-2cd2-49e4-ab71-3f95d163259f d09d27cbcfc1c788ecebd8c77e3f5c9e {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor"} -C3N-04944.WXS.A C3N-04944 LSCC WXS tissue_normal CPT0333940006 CPT0333940006.WholeExome.RP-1303.bam 16720005498 BAM aligned CPTAC3 0ac7b74b-6144-41ac-bd12-4936b3e669e6 4592799b5a75d11a0dc9ae63275e3ca7 {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.WXS.A.hg38 C3N-04944 LSCC WXS tissue_normal CPT0333940006 5dae124a-ee83-4aa5-850a-42b21248a20e_wxs_gdc_realn.bam 23536171518 BAM harmonized CPTAC3 aa6901fa-3093-45d9-b08f-c846ab662ab5 0f3955f63c142f47cca8239504a27584 {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04944.WXS.N C3N-04944 LSCC WXS blood_normal CPT0334010002 CPT0334010002.WholeExome.RP-1303.bam 21205430147 BAM aligned CPTAC3 177f0369-331b-45c5-9bf1-9b6c219714bd 6ea956c5da2c8cbd5aca8cd84d2e99ba {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal"} -C3N-04944.WXS.N.hg38 C3N-04944 LSCC WXS blood_normal CPT0334010002 b82c5fe0-411c-4b2d-917b-6d67c4c6d750_wxs_gdc_realn.bam 28712275057 BAM harmonized CPTAC3 a24e82ab-e74f-4de0-88c4-c2509d202bda 5e88b05a616b66a3129f8b1d872dc367 {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal"} -C3N-04944.WXS.T C3N-04944 LSCC WXS tumor CPT0333920006 CPT0333920006.WholeExome.RP-1303.bam 21515038676 BAM aligned CPTAC3 7ea24cb4-0ca1-4c6f-b9d8-35b212c27403 d75db7068d5daf69b00ee98059ecd0f1 {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor"} -C3N-04944.WXS.T.hg38 C3N-04944 LSCC WXS tumor CPT0333920006 6e1a8721-f8d3-4202-b715-d5a8cfd3a3c3_wxs_gdc_realn.bam 29830416478 BAM harmonized CPTAC3 811668a6-7b58-46a0-9144-d156623bc2bb 45733f53ee37b17341552228b8bd660d {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor"} -C3N-04982.MethArray.Green.A C3N-04982 LSCC Methylation_Array tissue_normal CPT0334340006 204930630081_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 55b64f21-bb65-4b18-adc3-7cafa6002750 85ce5c12c3c17016f3e6aa8dc73d69ae {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.MethArray.Green.T C3N-04982 LSCC Methylation_Array tumor CPT0334320006 204930630040_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 1dabd59c-b3ae-47a3-b80f-1902beb3e9e7 6e6a70f011b401e3a84ff0c89dd7c572 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor"} -C3N-04982.MethArray.Red.A C3N-04982 LSCC Methylation_Array tissue_normal CPT0334340006 204930630081_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 3011375e-1d94-40ae-8c91-29dbf73e3a7d b09d5f23f92568e01395c8a8b69c819b {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.MethArray.Red.T C3N-04982 LSCC Methylation_Array tumor CPT0334320006 204930630040_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 9a1e3f78-34da-407c-a1b9-343d9fbcef55 54fd9171fe7bda98d45ecaa6457f85d1 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor"} -C3N-04982.miRNA-Seq.A.hg38 C3N-04982 LSCC miRNA-Seq tissue_normal CPT0334340009 fc53e5e5-3c7a-4a91-a4ac-3a31e88ed9a4_mirnaseq_gdc_realn.bam 244576993 BAM harmonized CPTAC3 bf3cf179-0833-4f1c-ae74-8f45c22bc8f8 cc7cd2c7906dd9eb37482d04303bc0f2 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.miRNA-Seq.S14_L006_R1.T C3N-04982 LSCC miRNA-Seq tumor CPT0334320009 201209_UNC32-K00270_0265_AHJ55WBBXY_GGTAGC_S14_L006_R1_001.unaln.bam 307441852 BAM S14_L006_R1 unaligned CPTAC3 9b16e7a3-ef9f-4349-a9bc-30a4ac66a3a3 7ef9eab7e7f7731a3c2dca49bd911e22 {"aliquot_tag": "ALQ_de02d992", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04982.miRNA-Seq.S19_L006_R1.A C3N-04982 LSCC miRNA-Seq tissue_normal CPT0334340009 201209_UNC32-K00270_0265_AHJ55WBBXY_TCCCGA_S19_L006_R1_001.unaln.bam 221058155 BAM S19_L006_R1 unaligned CPTAC3 9ac35ebb-9785-42a7-b085-df1d19f2a8dc 13e0f5f55741c3fa26fb007a88eaf395 {"aliquot_tag": "ALQ_51422c32", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.miRNA-Seq.T.hg38 C3N-04982 LSCC miRNA-Seq tumor CPT0334320009 9072b24d-8a42-464e-9d45-b908cb718eed_mirnaseq_gdc_realn.bam 347790561 BAM harmonized CPTAC3 9e9590b4-152a-4943-8b36-6b9e23872e60 2cabc753dfbf1d5d344d4627b2fa4ace {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor"} -C3N-04982.RNA-Seq.chimeric.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.chimeric.gdc_realn.bam 386692119 BAM chimeric harmonized CPTAC3 f6a1f257-a7b4-4efe-8ab6-58ff36a06621 bbf65a62107049da3bc2a8b32f811c69 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.RNA-Seq.chimeric.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.chimeric.gdc_realn.bam 143124640 BAM chimeric harmonized CPTAC3 68700fde-a670-4dce-bf54-c9fb2d0dbef0 83e7ad53b0bb23df06bcde6ed98235e5 {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor"} -C3N-04982.RNA-Seq.genomic.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.genomic.gdc_realn.bam 9581158464 BAM genomic harmonized CPTAC3 f745803a-bf46-4597-91cb-ec8623157ccd 1b3805da33c9954ca14c1dbcf9a9b013 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.RNA-Seq.genomic.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.genomic.gdc_realn.bam 5896144523 BAM genomic harmonized CPTAC3 3e58610e-b1ab-4c22-a2fe-b84c003cbe9a c0d9398541484cbe39134b63c276b132 {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor"} -C3N-04982.RNA-Seq.S18_L005_R1.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3026911232 FASTQ S18_L005_R1 unaligned CPTAC3 8ca5fa21-48e5-4126-a630-8d5d067831e7 14da63ac1a7f18357d25a1410aaf7d12 {"aliquot_tag": "ALQ_de02d992", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-04982.RNA-Seq.S18_L005_R2.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ S18_L005_R2 unaligned CPTAC3 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 7a3a4e2ea80c5e2f48867a477d8853bc {"aliquot_tag": "ALQ_de02d992", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-04982.RNA-Seq.S6_L002_R1.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4757949761 FASTQ S6_L002_R1 unaligned CPTAC3 60b48130-b657-492c-9839-2a8236f5b752 cd413147711efc8cc25a401e3a71504e {"aliquot_tag": "ALQ_51422c32", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.RNA-Seq.S6_L002_R2.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 5297286576 FASTQ S6_L002_R2 unaligned CPTAC3 9b338fa6-70b4-4384-a81e-302d3d66da03 d2d9b88d8064446462e8166df0fe62b3 {"aliquot_tag": "ALQ_51422c32", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.RNA-Seq.transcriptome.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.transcriptome.gdc_realn.bam 11622572154 BAM transcriptome harmonized CPTAC3 f5595dea-7b3f-450f-8dde-3fb286778235 99f64b749e5c06c5294d1cc8fb26eae9 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.RNA-Seq.transcriptome.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.transcriptome.gdc_realn.bam 9246187410 BAM transcriptome harmonized CPTAC3 c4a21c49-12f1-496b-8dfc-a2d56536bca1 a4d7e8d3246274a2a5ab37ca91d7ec8f {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor"} -C3N-04982.WGS.N C3N-04982 LSCC WGS blood_normal CPT0334410002 CPT0334410002.WholeGenome.RP-2158.bam 24182065112 BAM aligned CPTAC3 08fa0a40-cbfe-42d6-8b88-e17c4b75d461 f077b3b5231e04b08d449bb798b37058 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal"} -C3N-04982.WGS.N.hg38 C3N-04982 LSCC WGS blood_normal CPT0334410002 b7d87f7b-30be-4cde-a718-3d1eff3a47e2_wgs_gdc_realn.bam 72893984984 BAM harmonized CPTAC3 4ba0591d-3c73-4e01-99e4-7f123807a869 dc6f67b5593105d0d3bb9919843c2e67 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal"} -C3N-04982.WGS.T C3N-04982 LSCC WGS tumor CPT0334320006 CPT0334320006.WholeGenome.RP-2158.bam 26185475216 BAM aligned CPTAC3 b2cc65c4-7c17-43c9-9c61-0f46e6ca171f 2ddf4706a64c57df05eb7c9348ab1050 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor"} -C3N-04982.WGS.T.hg38 C3N-04982 LSCC WGS tumor CPT0334320006 df5e7fb1-5cde-462a-8e99-57d1c1e55bbb_wgs_gdc_realn.bam 78144318605 BAM harmonized CPTAC3 01af4614-efe4-41bf-9563-42307c7ad70c 840aaf7e122e9ed2af9900943a73ffb0 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor"} -C3N-04982.WXS.A C3N-04982 LSCC WXS tissue_normal CPT0334340006 CPT0334340006.WholeExome.RP-1303.bam 17565628043 BAM aligned CPTAC3 3f295d98-dc74-4237-a236-fc4dd6a1c619 8ff98287c0cde79b87f5e63eb3f84bc4 {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.WXS.A.hg38 C3N-04982 LSCC WXS tissue_normal CPT0334340006 23d9becf-10ce-414b-affc-a27644501eb5_wxs_gdc_realn.bam 24081176494 BAM harmonized CPTAC3 7db3a3b1-7f4b-4688-b920-4900c0c5fe57 61e5e8ec7c0f40d82ade0c7393f765c5 {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal"} -C3N-04982.WXS.N C3N-04982 LSCC WXS blood_normal CPT0334410002 CPT0334410002.WholeExome.RP-1303.bam 26479139402 BAM aligned CPTAC3 260542e7-bae2-4251-91b2-ad3af9b63445 9c9f2a764c30d838fb5162dc5fd84574 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal"} -C3N-04982.WXS.N.hg38 C3N-04982 LSCC WXS blood_normal CPT0334410002 b7d87f7b-30be-4cde-a718-3d1eff3a47e2_wxs_gdc_realn.bam 36861261658 BAM harmonized CPTAC3 78407693-79ae-4e74-b61f-ad721e971cbd a04d88d55ef93ab6bfd5c68d7d5761c2 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal"} -C3N-04982.WXS.T C3N-04982 LSCC WXS tumor CPT0334320006 CPT0334320006.WholeExome.RP-1303.bam 24071158645 BAM aligned CPTAC3 003dbe5b-ccdd-41d0-a4f6-d4aa0749cdc6 25ac1dc10d62ab1f27c5c2f7e31b8080 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor"} -C3N-04982.WXS.T.hg38 C3N-04982 LSCC WXS tumor CPT0334320006 df5e7fb1-5cde-462a-8e99-57d1c1e55bbb_wxs_gdc_realn.bam 33022672302 BAM harmonized CPTAC3 6bf0ede5-e248-4e4c-bfef-dd689c9a954d 8e9cf365132aa64e488515fa7b4365cb {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor"} -C3N-05039.MethArray.Green.T C3N-05039 GBM Methylation_Array tumor CPT0375550007 205555380179_R08C01_Grn.idat 13677960 IDAT Green NA CPTAC3 0e2b16e4-ac2d-4ed4-a73a-c9a407bba896 c4146bd86e684fdcdf4f91a508d4839a {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor"} -C3N-05039.MethArray.Red.T C3N-05039 GBM Methylation_Array tumor CPT0375550007 205555380179_R08C01_Red.idat 13677960 IDAT Red NA CPTAC3 b1dab8f3-b85c-4582-a2f8-cd872fd00719 656a7312aebdb2491cc1e26a46887cd6 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor"} -C3N-05039.miRNA-Seq.S1_L006_R1.T C3N-05039 GBM miRNA-Seq tumor CPT0375550010 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTGAT_S1_L006_R1_001.unaln.bam 339916115 BAM S1_L006_R1 unaligned CPTAC3 216cd2e0-5dd6-45e7-a80b-229e2904b2b5 5e90186684cd07c0f67c25f6e35794a7 {"aliquot_tag": "ALQ_f8816a34", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05039.miRNA-Seq.T.hg38 C3N-05039 GBM miRNA-Seq tumor CPT0375550010 9b54f050-596d-4330-a614-d4114efbc541_mirnaseq_gdc_realn.bam 368781524 BAM harmonized CPTAC3 83cb7915-658a-43ea-8a36-9282a80da07a f466bcb01db3086432a8bd31c48604a9 {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor"} -C3N-05039.RNA-Seq.chimeric.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.chimeric.gdc_realn.bam 318784757 BAM chimeric harmonized CPTAC3 b33c24d0-d7a5-40b6-98ee-abdc68a5f77d d75ce2cbc5ec1d960db55b49c074bf82 {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor"} -C3N-05039.RNA-Seq.genomic.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.genomic.gdc_realn.bam 8268764824 BAM genomic harmonized CPTAC3 cee0c9b9-adef-4af8-8563-e1729eb1b26e 344b471bd97603b9ae8ce8ef7bd0bb5d {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor"} -C3N-05039.RNA-Seq.S17_L005_R1.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ S17_L005_R1 unaligned CPTAC3 6ab25656-a131-45dd-8109-b25ff504557b 217e7c4eb1e1aec3d0823ff9fadd0323 {"aliquot_tag": "ALQ_f8816a34", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05039.RNA-Seq.S17_L005_R2.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ S17_L005_R2 unaligned CPTAC3 65389fb7-97ce-4735-bc64-6092b9173a2a 21cc7ed3109046088483706b8b9ac3d7 {"aliquot_tag": "ALQ_f8816a34", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05039.RNA-Seq.transcriptome.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.transcriptome.gdc_realn.bam 12531294067 BAM transcriptome harmonized CPTAC3 ada7b210-accb-4645-8e6c-074e32bb35de 6a13445f9e53e824494acdc8b4859d49 {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor"} -C3N-05039.WGS.N C3N-05039 GBM WGS blood_normal CPT0375610002 CPT0375610002.WholeGenome.RP-2158.bam 23424241762 BAM aligned CPTAC3 a018a950-4966-4f64-a4ef-d417ddf5ca0a c74d72c2dccb0f5d16bb3476728303bd {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal"} -C3N-05039.WGS.N.hg38 C3N-05039 GBM WGS blood_normal CPT0375610002 e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wgs_gdc_realn.bam 69461606241 BAM harmonized CPTAC3 05fa37fb-0df8-498f-8f7f-14f9a735c215 ed160f977b663eea7389ee63244699d5 {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal"} -C3N-05039.WGS.T C3N-05039 GBM WGS tumor CPT0375550007 CPT0375550007.WholeGenome.RP-2158.bam 27433556193 BAM aligned CPTAC3 4428d05f-66c0-4500-b0d6-b31bf646ba74 855321130f5c1c0df497900fae841dd0 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor"} -C3N-05039.WGS.T.hg38 C3N-05039 GBM WGS tumor CPT0375550007 fe17632c-e4bd-4c42-aa43-255206b1a97b_wgs_gdc_realn.bam 82840854167 BAM harmonized CPTAC3 03e5daf7-cc04-4a52-855a-8f776d8655a5 7450cf9066ae10fdb293bccb319ee974 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor"} -C3N-05039.WXS.N C3N-05039 GBM WXS blood_normal CPT0375610002 CPT0375610002.WholeExome.RP-1303.bam 29288445996 BAM aligned CPTAC3 887088a7-de8b-43bc-af96-5ffb1dd72a0d c0e15167765168d0425947c5bd894f42 {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal"} -C3N-05039.WXS.N.hg38 C3N-05039 GBM WXS blood_normal CPT0375610002 e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wxs_gdc_realn.bam 41040654784 BAM harmonized CPTAC3 b528bf8e-bae9-4d91-8d62-1746ba1a1ac0 6d00bd229849df2394c9c68f65f15b1a {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal"} -C3N-05039.WXS.T C3N-05039 GBM WXS tumor CPT0375550007 CPT0375550007.WholeExome.RP-1303.bam 23372925491 BAM aligned CPTAC3 2c3692de-a4a4-42ad-b89b-279b35f07e0f 7bf242a732e39af260b4d1a2e25fbd42 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor"} -C3N-05039.WXS.T.hg38 C3N-05039 GBM WXS tumor CPT0375550007 fe17632c-e4bd-4c42-aa43-255206b1a97b_wxs_gdc_realn.bam 32616896013 BAM harmonized CPTAC3 9b5da686-f797-4f86-b29f-790686e55120 a5980997344df3b781c6fb2f966f68d9 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor"} -C3N-05069.RNA-Seq.chimeric.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.chimeric.gdc_realn.bam 45321058 BAM chimeric harmonized CPTAC3 932fe7f4-4b27-4577-a75b-b162b0bb54c5 576f0cfe68d6c2fd8940e1675a552965 {"aliquot_tag": "ALQ_f7e74951", "gdc_sample_type": "Primary Tumor"} -C3N-05069.RNA-Seq.genomic.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.genomic.gdc_realn.bam 5587340062 BAM genomic harmonized CPTAC3 c9b9d47c-b924-4e5f-8361-dbf880e6a99b 2c71530765e85adc9ade5de7a48b5543 {"aliquot_tag": "ALQ_f7e74951", "gdc_sample_type": "Primary Tumor"} -C3N-05069.RNA-Seq.S1_R1.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R1_001.fastq.gz 3349966026 FASTQ S1_R1 unaligned CPTAC3 133e5128-d1a6-494f-8057-5664f0e6290e 3f65598fdab94e045c04dec386068a3e {"aliquot_tag": "ALQ_f7e74951", "sample": "S1", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05069.RNA-Seq.S1_R2.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R2_001.fastq.gz 3492595143 FASTQ S1_R2 unaligned CPTAC3 579f7c4f-e670-42c0-85e1-6d60b1ea8e41 24621d200b6d0e16fc460e4943d3b67b {"aliquot_tag": "ALQ_f7e74951", "sample": "S1", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05069.RNA-Seq.transcriptome.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.transcriptome.gdc_realn.bam 4097890065 BAM transcriptome harmonized CPTAC3 83d7fa9f-f552-4c3d-9fa8-2b638a926ed6 34ea3549f9411cefc56f9bb25aed2d54 {"aliquot_tag": "ALQ_f7e74951", "gdc_sample_type": "Primary Tumor"} -C3N-05078.MethArray.Green.T C3N-05078 LSCC Methylation_Array tumor CPT0313250006 204372030072_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0c5941e4-5d8b-4982-8232-976f7da14e88 71b4df69a73b6f9a2a46730bd40bdbbf {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor"} -C3N-05078.MethArray.Red.T C3N-05078 LSCC Methylation_Array tumor CPT0313250006 204372030072_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 d685cbb0-0bc3-40aa-b0e4-a8c665b49e05 312d5c4d1ceb0f8b2e71d36c9901b104 {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor"} -C3N-05078.miRNA-Seq.S13_L008_R1.T C3N-05078 LSCC miRNA-Seq tumor CPT0313250009 200224_UNC31-K00269_0267_AHC722BBXY_AGTCAA_S13_L008_R1_001.unaln.bam 173285033 BAM S13_L008_R1 unaligned CPTAC3 b3646701-9a49-4df4-be37-c3a957a369e3 536bd3440d3fbbc05d480d627cc3f141 {"aliquot_tag": "ALQ_20fcefd4", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05078.miRNA-Seq.T.hg38 C3N-05078 LSCC miRNA-Seq tumor CPT0313250009 752c3d6f-ac79-4792-88f3-cc9159fe73db_mirnaseq_gdc_realn.bam 200095100 BAM harmonized CPTAC3 03d24c1d-c3df-4a47-b78a-4706f7c0a947 cbb3f952207203f3d5f3a7bed6d53031 {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor"} -C3N-05078.RNA-Seq.chimeric.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.chimeric.gdc_realn.bam 36509504 BAM chimeric harmonized CPTAC3 0c2fc4fa-4fd9-409d-a5ba-42b1803e3ecf 5cedc3fb598af53ef8e389f47c285bc9 {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor"} -C3N-05078.RNA-Seq.genomic.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.genomic.gdc_realn.bam 9151158328 BAM genomic harmonized CPTAC3 4fe71196-6dd2-463c-904e-d71773063f2a 01c445a80cf485e5d5e6aa53ebfdd8f4 {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor"} -C3N-05078.RNA-Seq.S13_L004_R1.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R1_001.fastq.gz 4598103896 FASTQ S13_L004_R1 unaligned CPTAC3 7b355ee0-226f-49a8-8e17-2063e5db5be2 6a312d28221324009efbb8bc04c12bd2 {"aliquot_tag": "ALQ_20fcefd4", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05078.RNA-Seq.S13_L004_R2.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R2_001.fastq.gz 4948992963 FASTQ S13_L004_R2 unaligned CPTAC3 b207acd5-27e6-4f5e-ab9a-7e1188acef4c 0a53af8cf611af23e5524a7a36e2800d {"aliquot_tag": "ALQ_20fcefd4", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05078.RNA-Seq.transcriptome.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.transcriptome.gdc_realn.bam 13025134872 BAM transcriptome harmonized CPTAC3 af359602-81e7-4cfc-96ff-daea26d26f9e c0953d561bfc94a80b207c71ef6a19df {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor"} -C3N-05078.WGS.N C3N-05078 LSCC WGS blood_normal CPT0313270002 CPT0313270002.WholeGenome.RP-2158.bam 25476411907 BAM aligned CPTAC3 e64690b9-1ba0-4053-9664-0ed131d25e4e 723f9ba41a473f4c9541d6ec1073c1c8 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal"} -C3N-05078.WGS.N.hg38 C3N-05078 LSCC WGS blood_normal CPT0313270002 0f680ce2-70af-4ffd-a3de-f38fd6d35eb2_wgs_gdc_realn.bam 75564564438 BAM harmonized CPTAC3 aaca2d93-2662-44b2-b37b-e819c5a0d346 7441a14e68f85020222639949a63a972 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal"} -C3N-05078.WGS.T C3N-05078 LSCC WGS tumor CPT0313250006 CPT0313250006.WholeGenome.RP-2158.bam 22801546627 BAM aligned CPTAC3 d7d6fa47-c740-429e-b4e6-cb93f424e743 d30fd66a44eb18fb8d5f3143026e63ba {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor"} -C3N-05078.WGS.T.hg38 C3N-05078 LSCC WGS tumor CPT0313250006 81268520-0222-48f1-8b38-865b7d274018_wgs_gdc_realn.bam 65095127623 BAM harmonized CPTAC3 ecbfef91-e2f0-4b29-926b-a3611f97331f f25bfc73faedd8252e1d0e9c3f48acf1 {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor"} -C3N-05078.WXS.N C3N-05078 LSCC WXS blood_normal CPT0313270002 CPT0313270002.WholeExome.RP-1303.bam 20578360610 BAM aligned CPTAC3 b7d5c2c1-8528-445d-9edf-d9056a313599 670b085147ae24a8a58af9b6d20882d3 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal"} -C3N-05078.WXS.N.hg38 C3N-05078 LSCC WXS blood_normal CPT0313270002 0f680ce2-70af-4ffd-a3de-f38fd6d35eb2_wxs_gdc_realn.bam 28234499958 BAM harmonized CPTAC3 1660c3c8-7b4c-4e1b-a8ca-a45d991f0163 e10813ed3bbf9ba90732b45e2e4bb9c3 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal"} -C3N-05078.WXS.T C3N-05078 LSCC WXS tumor CPT0313250006 CPT0313250006.WholeExome.RP-1303.bam 18294804830 BAM aligned CPTAC3 3758af49-c42a-43a2-a67b-726aa658e836 7aa0b2cd399de1200ed95fc64aa00d7b {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor"} -C3N-05078.WXS.T.hg38 C3N-05078 LSCC WXS tumor CPT0313250006 81268520-0222-48f1-8b38-865b7d274018_wxs_gdc_realn.bam 25072574120 BAM harmonized CPTAC3 feb4a2e8-3251-4a2f-82a0-2f7ecf12d074 b59f652b6899bda2d65d1ca89253284d {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor"} -C3N-05079.MethArray.Green.A C3N-05079 LSCC Methylation_Array tissue_normal CPT0313290006 204372030015_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 97021d71-211b-4710-9272-ffeaf0541dff 54ff7320fa908ac1c2b3cc98e9831584 {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.MethArray.Green.T C3N-05079 LSCC Methylation_Array tumor CPT0313280006 204372030014_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 6e036803-1d9b-485d-a3a6-09cd0c2735cc 95deca3f5dfb0ed57853dd6f619338b0 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor"} -C3N-05079.MethArray.Red.A C3N-05079 LSCC Methylation_Array tissue_normal CPT0313290006 204372030015_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 0bdcc1b8-e5a9-4511-b9d0-14dbdb0b70b7 fc648b8f5c973a9f91600a9283f9786a {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.MethArray.Red.T C3N-05079 LSCC Methylation_Array tumor CPT0313280006 204372030014_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 08957da0-8bba-4dc5-85ef-82699769ae8a feda12be01b612a6b346862a70253eac {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor"} -C3N-05079.miRNA-Seq.A.hg38 C3N-05079 LSCC miRNA-Seq tissue_normal CPT0313290009 898fa3e8-e46f-4ac8-b2d2-9c9698b7deb7_mirnaseq_gdc_realn.bam 303461761 BAM harmonized CPTAC3 8b28f514-b3b9-4107-b077-d82a26dfb180 b3472dceec668303b0d856ffab3b4bac {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.miRNA-Seq.S14_L008_R1.T C3N-05079 LSCC miRNA-Seq tumor CPT0313280009 200224_UNC31-K00269_0267_AHC722BBXY_AGTTCC_S14_L008_R1_001.unaln.bam 204307764 BAM S14_L008_R1 unaligned CPTAC3 00e7ab76-7ea4-4b8a-8a84-483719bdb7d9 f848d0c7db846aff188a6e8837d8266c {"aliquot_tag": "ALQ_d86c2b65", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05079.miRNA-Seq.S9_L005_R1.A C3N-05079 LSCC miRNA-Seq tissue_normal CPT0313290009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGATGT_S9_L005_R1_001.unaln.bam 277897229 BAM S9_L005_R1 unaligned CPTAC3 db018ff5-134a-430c-87eb-8058a0ce0443 0365aff51ea74cb6106b2dffbfe51326 {"aliquot_tag": "ALQ_e50c02d5", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.miRNA-Seq.T.hg38 C3N-05079 LSCC miRNA-Seq tumor CPT0313280009 183f2d4c-8ad9-4d96-8cb8-8ae2bab551ba_mirnaseq_gdc_realn.bam 224251650 BAM harmonized CPTAC3 ae68948d-311c-4f27-aded-43f77773e2ff 2145971f4011d47da589395c52d7b5fa {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor"} -C3N-05079.RNA-Seq.chimeric.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.chimeric.gdc_realn.bam 30706269 BAM chimeric harmonized CPTAC3 fdb05485-e9b6-406a-8f2a-2e31dfc86737 31f35cdd024532b7d4bd8dee2d161676 {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.RNA-Seq.chimeric.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.chimeric.gdc_realn.bam 32671820 BAM chimeric harmonized CPTAC3 7df01112-84a6-4d1d-84c0-bb41cacdabd6 f33d6abc9ef3878e432659478ceabfc0 {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor"} -C3N-05079.RNA-Seq.genomic.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.genomic.gdc_realn.bam 7843889901 BAM genomic harmonized CPTAC3 eae3dc40-746c-455e-87d8-dba7aae0b280 a72f00f7f46b8321d4e3507c54e8289a {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.RNA-Seq.genomic.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.genomic.gdc_realn.bam 7641407302 BAM genomic harmonized CPTAC3 e4c7eb31-c1b7-4eab-8d65-e24802aaf1e0 d0a2f5deb19384da24e731e5a906e301 {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor"} -C3N-05079.RNA-Seq.S14_L004_R1.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R1_001.fastq.gz 3676782114 FASTQ S14_L004_R1 unaligned CPTAC3 2ed19366-78ac-416b-9c74-585b2c05069d b6542365b97ae4ccbc910dd7189d5b76 {"aliquot_tag": "ALQ_d86c2b65", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05079.RNA-Seq.S14_L004_R2.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R2_001.fastq.gz 3908549524 FASTQ S14_L004_R2 unaligned CPTAC3 b52bc76f-30d1-40fc-a3d0-c30e7c35fa05 e9a049f694bac4b45937c372c5bd59f5 {"aliquot_tag": "ALQ_d86c2b65", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05079.RNA-Seq.S2_L005_R1.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R1_001.fastq.gz 4002383357 FASTQ S2_L005_R1 unaligned CPTAC3 f049a6c4-3d7d-4ef7-8b6c-388e6e91cbeb defa00bd94225a35335802ca666bc3d4 {"aliquot_tag": "ALQ_e50c02d5", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.RNA-Seq.S2_L005_R2.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R2_001.fastq.gz 4136253059 FASTQ S2_L005_R2 unaligned CPTAC3 f24ce64f-02cc-40a6-a3ea-150c7dd88dae e1fd5408f037976109d4025bde5aa1f2 {"aliquot_tag": "ALQ_e50c02d5", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.RNA-Seq.transcriptome.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.transcriptome.gdc_realn.bam 10085239384 BAM transcriptome harmonized CPTAC3 2b474d6b-cd36-46e8-9b92-16f03852d266 0b18f78199887c2850ff5e0534e3da84 {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.RNA-Seq.transcriptome.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.transcriptome.gdc_realn.bam 9978722154 BAM transcriptome harmonized CPTAC3 223624f8-75ef-45a0-80fb-9c09d471c9ed daa35937df0e1a900266b352a8b7b508 {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor"} -C3N-05079.WGS.N C3N-05079 LSCC WGS blood_normal CPT0313300002 CPT0313300002.WholeGenome.RP-2158.bam 21731961742 BAM aligned CPTAC3 2d317f20-578a-4417-9c62-9e1610973ac0 9e94f25c9b3a13eeb1fd48fd3237099d {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal"} -C3N-05079.WGS.N.hg38 C3N-05079 LSCC WGS blood_normal CPT0313300002 cc6e30e4-a477-48c7-b201-528211f3d5df_wgs_gdc_realn.bam 65080632447 BAM harmonized CPTAC3 77f97a94-18b9-4cb0-8b97-498eb2a9b441 ec8ff425188cb19f5281626876224c89 {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal"} -C3N-05079.WGS.T C3N-05079 LSCC WGS tumor CPT0313280006 CPT0313280006.WholeGenome.RP-2158.bam 24614136960 BAM aligned CPTAC3 a82cf098-ab13-4cd1-ae24-cff89ea736e3 06bdcfd8363d42f4b3e4439e0276ea4f {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor"} -C3N-05079.WGS.T.hg38 C3N-05079 LSCC WGS tumor CPT0313280006 7c9f892f-1bd3-492d-bae7-09c323a90ab8_wgs_gdc_realn.bam 72412570414 BAM harmonized CPTAC3 191a2a9b-da05-4186-8e73-a43dad489dcb be1448153309ecea7087da7860c85bb9 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor"} -C3N-05079.WXS.A C3N-05079 LSCC WXS tissue_normal CPT0313290006 CPT0313290006.WholeExome.RP-1303.bam 36965491616 BAM aligned CPTAC3 582baa68-d439-4451-bd72-612fb5f1e9ed e8417787cd87bc02a2fef4ee1c6fb894 {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.WXS.A.hg38 C3N-05079 LSCC WXS tissue_normal CPT0313290006 21d29385-d8e0-4637-9b5b-34e4a728f8ec_wxs_gdc_realn.bam 51131619209 BAM harmonized CPTAC3 ebd0b266-0091-46ec-85f4-6425d7bf8a4c 1d651cf396e19386d3f33cba646b59ce {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05079.WXS.N C3N-05079 LSCC WXS blood_normal CPT0313300002 CPT0313300002.WholeExome.RP-1303.bam 24320660645 BAM aligned CPTAC3 c79deaae-9a05-447a-b745-4fed2ce27b81 175a230cda408fdd318908109d2a5249 {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal"} -C3N-05079.WXS.N.hg38 C3N-05079 LSCC WXS blood_normal CPT0313300002 cc6e30e4-a477-48c7-b201-528211f3d5df_wxs_gdc_realn.bam 33941807249 BAM harmonized CPTAC3 7627660e-7128-4103-aa9e-74ee5aa1ceb2 4c41a98bafcfcfa7a463668959f66e91 {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal"} -C3N-05079.WXS.T C3N-05079 LSCC WXS tumor CPT0313280006 CPT0313280006.WholeExome.RP-1303.bam 19776372856 BAM aligned CPTAC3 fce6011a-c75a-4e4a-9afc-5c36ae9c4698 9930ef3d61077859c44c358ec6b23867 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor"} -C3N-05079.WXS.T.hg38 C3N-05079 LSCC WXS tumor CPT0313280006 7c9f892f-1bd3-492d-bae7-09c323a90ab8_wxs_gdc_realn.bam 27105783152 BAM harmonized CPTAC3 caf98681-805e-41ab-af59-842c116811bb d70b9de9301743f6e48e20254070fc48 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor"} -C3N-05080.MethArray.Green.T C3N-05080 LSCC Methylation_Array tumor CPT0321640006 204372030085_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 907f452c-a0db-4fbc-a58d-7188ae512cf1 367be7a29328b334dc32de14b9b8c7fd {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor"} -C3N-05080.MethArray.Red.T C3N-05080 LSCC Methylation_Array tumor CPT0321640006 204372030085_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 252d6d54-d5ce-4a9c-bfb8-a9d3a6c95c5e 7123562e6f9dcf5643387bdd0b67c494 {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor"} -C3N-05080.miRNA-Seq.S41_L007_R1.T C3N-05080 LSCC miRNA-Seq tumor CPT0321640009 200224_UNC31-K00269_0267_AHC722BBXY_GACGAC_S41_L007_R1_001.unaln.bam 234621804 BAM S41_L007_R1 unaligned CPTAC3 d41874e9-10da-4c02-94f0-03b3caee5931 2df4bc97021a5d0f9f4d5cad0fa0d585 {"aliquot_tag": "ALQ_9f1d92b8", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05080.miRNA-Seq.T.hg38 C3N-05080 LSCC miRNA-Seq tumor CPT0321640009 73f1bc52-433a-4a9b-a3fd-37d871f3dfd0_mirnaseq_gdc_realn.bam 260564259 BAM harmonized CPTAC3 2f921283-151e-4282-a1bf-16c4226cb0b8 9759d158dad57a31e4eb7a404616d36e {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor"} -C3N-05080.RNA-Seq.chimeric.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.chimeric.gdc_realn.bam 43479221 BAM chimeric harmonized CPTAC3 ed66ae15-8b54-4070-b523-69b99cf71885 3915f2a9b1a174885b86b91af8266f39 {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor"} -C3N-05080.RNA-Seq.genomic.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.genomic.gdc_realn.bam 10726704439 BAM genomic harmonized CPTAC3 607682c6-3c33-4684-ad6e-5f1f82518efa 5b1d6b9173cb8b04cc6fc00bf826b50e {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor"} -C3N-05080.RNA-Seq.S9_L003_R1.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R1_001.fastq.gz 5320575999 FASTQ S9_L003_R1 unaligned CPTAC3 b5efa31d-accd-4914-9142-7e7b1a89170e 51b3b22e41e48c08e5639527dcf76398 {"aliquot_tag": "ALQ_9f1d92b8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05080.RNA-Seq.S9_L003_R2.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R2_001.fastq.gz 5656817918 FASTQ S9_L003_R2 unaligned CPTAC3 a7e0434d-6689-4831-b5ff-0df17c1f3191 b1a505b0feb29a82f72fd98ccd236cd5 {"aliquot_tag": "ALQ_9f1d92b8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05080.RNA-Seq.transcriptome.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.transcriptome.gdc_realn.bam 14941845517 BAM transcriptome harmonized CPTAC3 5ad4b6e4-5d69-4165-8db9-9144d22d7623 f8a41f8ef9bc349076edceb0f084f6f6 {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor"} -C3N-05080.WGS.N C3N-05080 LSCC WGS blood_normal CPT0321670002 CPT0321670002.WholeGenome.RP-2158.bam 32117416863 BAM aligned CPTAC3 1065f29d-90b1-4b01-80a4-bc728f1f4480 e9b11e9fa5b8c48977f4905232e86df6 {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-05080.WGS.N.hg38 C3N-05080 LSCC WGS blood_normal CPT0321670002 7ab7860a-416f-40a9-ad13-90c49c392507_wgs_gdc_realn.bam 94869815892 BAM harmonized CPTAC3 fede5ded-dfdb-46d0-a96c-db681ead09da e9262813c7f03216fdb139f28853b5e6 {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-05080.WGS.T C3N-05080 LSCC WGS tumor CPT0321640006 CPT0321640006.WholeGenome.RP-2158.bam 23242180231 BAM aligned CPTAC3 5dbde3eb-5a93-4395-93c2-bff51e805c81 7ab44b26d1dfbea222fc3d631b677fbf {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor"} -C3N-05080.WGS.T.hg38 C3N-05080 LSCC WGS tumor CPT0321640006 9e4c78c3-fe39-47ab-8ede-e7a9843de8ae_wgs_gdc_realn.bam 68949469409 BAM harmonized CPTAC3 188683b2-4b05-4ba7-af25-da55de8055fe de07f5ec2c7f23b84133e3a91e035543 {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor"} -C3N-05080.WXS.N C3N-05080 LSCC WXS blood_normal CPT0321670002 CPT0321670002.WholeExome.RP-1303.bam 22201659914 BAM aligned CPTAC3 058b9ed9-7b8d-4cb6-bbc6-9d3edbe74a8e 3b209909315908943812243c1e575a49 {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-05080.WXS.N.hg38 C3N-05080 LSCC WXS blood_normal CPT0321670002 7ab7860a-416f-40a9-ad13-90c49c392507_wxs_gdc_realn.bam 30013226366 BAM harmonized CPTAC3 5d92d6cb-0622-4376-871d-69b6978df9d8 4ab9f4704a3ab4ff0715871cde121fcd {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal"} -C3N-05080.WXS.T C3N-05080 LSCC WXS tumor CPT0321640006 CPT0321640006.WholeExome.RP-1303.bam 31591593862 BAM aligned CPTAC3 5bf69ea5-7618-4046-9487-4f281533b64d fe3538fe2ed54323e454975b131583d8 {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor"} -C3N-05080.WXS.T.hg38 C3N-05080 LSCC WXS tumor CPT0321640006 9e4c78c3-fe39-47ab-8ede-e7a9843de8ae_wxs_gdc_realn.bam 43743988820 BAM harmonized CPTAC3 5573115d-3932-40c3-aa09-674bf155232d ad98f2b4d26bafe4b7b28b8d46dcee5d {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor"} -C3N-05085.MethArray.Green.A C3N-05085 LSCC Methylation_Array tissue_normal CPT0313370009 204930640122_R01C01_Grn.idat 13677965 IDAT Green NA CPTAC3 7ab13a0d-088c-4885-a0b9-84d9d884e41f 87e979e14084872fbe6228796711b37f {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.MethArray.Green.T C3N-05085 LSCC Methylation_Array tumor CPT0384250006 204930630111_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 694cc450-1e56-407c-aa8c-49580de2c17e 1b3b20168a810c2ea0cd2f949b1d277b {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor"} -C3N-05085.MethArray.Red.A C3N-05085 LSCC Methylation_Array tissue_normal CPT0313370009 204930640122_R01C01_Red.idat 13677965 IDAT Red NA CPTAC3 75e701e1-9c63-4970-ba94-6ce81d151af1 4d9bc4f01c35c76ed1984d61fbc51d75 {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.MethArray.Red.T C3N-05085 LSCC Methylation_Array tumor CPT0384250006 204930630111_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 7d63ec11-8ba2-49ee-b488-f733ef26917f e2bafa6916f49e7eca0cb5c8c0372907 {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor"} -C3N-05085.miRNA-Seq.A.hg38 C3N-05085 LSCC miRNA-Seq tissue_normal CPT0313370006 58d4a96f-353e-4ee3-ab89-a766b95baddc_mirnaseq_gdc_realn.bam 212668176 BAM harmonized CPTAC3 8135f53e-468f-406b-9d30-c37913d76ee9 b8df2a3e8c8ce1890c920f39b30eda61 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.miRNA-Seq.S29_L007_R1.T C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 201209_UNC32-K00270_0265_AHJ55WBBXY_CTTGTA_S29_L007_R1_001.unaln.bam 265183032 BAM S29_L007_R1 unaligned CPTAC3 caca83ea-6ccb-4748-9a67-8f571a34199b 5ae07305fea0b299591e28fbbf8072c9 {"aliquot_tag": "ALQ_fa14ca71", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05085.miRNA-Seq.S5_L006_R1.A C3N-05085 LSCC miRNA-Seq tissue_normal CPT0313370006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAAAAG_S5_L006_R1_001.unaln.bam 194905287 BAM S5_L006_R1 unaligned CPTAC3 6e8c9e6e-fbe0-458d-aac2-0f5a07287d11 965920a6e72e7bb2e9f5466cf823ae6e {"aliquot_tag": "ALQ_1df7280", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.miRNA-Seq.T.hg38 C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 3f2cf33c-9f15-45a7-a205-58a1efb2011c_mirnaseq_gdc_realn.bam 285799429 BAM harmonized CPTAC3 cced8d3f-f594-4492-b53f-58f57348eb59 d993f618265558cc305ff64a1a9ad044 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor"} -C3N-05085.REP_5496184.WGS.N C3N-05085 LSCC WGS blood_normal CPT0405320002 CPT0405320002.WholeGenome.RP-2158.bam 25924162058 BAM aligned CPTAC3 1d116097-e964-4e1a-8137-0bc7c2d82b3b c1fe3ef5b481e0439096dec04de52c78 {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-05085.REP_5496184.WGS.N.hg38 C3N-05085 LSCC WGS blood_normal CPT0405320002 791d45d2-e9bf-4c89-ab17-19af53f62009_wgs_gdc_realn.bam 75592846564 BAM harmonized CPTAC3 7ed0a11a-aff9-436c-88ce-3b5cdc834dd3 8732fe297ccfb82fa46096baff6cc2bc {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-05085.REP_5496184.WXS.N C3N-05085 LSCC WXS blood_normal CPT0405320002 CPT0405320002.WholeExome.RP-1303.bam 20178949836 BAM aligned CPTAC3 3adc4457-fa35-48a2-b840-fb8eaf8896be 40296d7290a7bcb9012738d76b39df8d {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-05085.REP_5496184.WXS.N.hg38 C3N-05085 LSCC WXS blood_normal CPT0405320002 791d45d2-e9bf-4c89-ab17-19af53f62009_wxs_gdc_realn.bam 27814762150 BAM harmonized CPTAC3 49dd8a0f-953c-4132-a09a-c1eddd5fd528 2869981e7a4b4ff34ff2759ca82aab09 {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal"} -C3N-05085.RNA-Seq.chimeric.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.chimeric.gdc_realn.bam 438404072 BAM chimeric harmonized CPTAC3 e4089443-0221-4eba-b170-e65df5a5b8b0 5ac9e5d0f42308346f6244b8377be8f5 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.RNA-Seq.chimeric.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.chimeric.gdc_realn.bam 479257045 BAM chimeric harmonized CPTAC3 94f25820-e2e2-4996-859f-59b29d9ed510 89589ea7a10325d11af8d21f8c3bafa7 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor"} -C3N-05085.RNA-Seq.genomic.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.genomic.gdc_realn.bam 8034870087 BAM genomic harmonized CPTAC3 55123a6b-8493-457f-8c12-111b48370630 8c827fc6984c5fd0105939b1a84121a2 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.RNA-Seq.genomic.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.genomic.gdc_realn.bam 8666268565 BAM genomic harmonized CPTAC3 63991276-cbfd-4056-884e-6a90d09f6e4e 68d8e9808189abe340efc7e50ca3dfd1 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor"} -C3N-05085.RNA-Seq.S16_L004_R1.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R1_001.fastq.gz 4017555811 FASTQ S16_L004_R1 unaligned CPTAC3 8be64a46-9b70-4522-9aa3-3b130369eefd 1c0b8662223c4eed8dc911658545583c {"aliquot_tag": "ALQ_1df7280", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.RNA-Seq.S16_L004_R2.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R2_001.fastq.gz 4426414996 FASTQ S16_L004_R2 unaligned CPTAC3 5591ec5f-9a25-44cf-98a6-bab87a2d8707 d92e1d89d9fc564f303d7fc459ec2fe4 {"aliquot_tag": "ALQ_1df7280", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.RNA-Seq.S26_L007_R1.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 4419596280 FASTQ S26_L007_R1 unaligned CPTAC3 dfdbf338-11c7-4894-bacb-ff03cdedd459 fd61bb5f9863a8009b45e95c60cac2c1 {"aliquot_tag": "ALQ_fa14ca71", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05085.RNA-Seq.S26_L007_R2.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4829793715 FASTQ S26_L007_R2 unaligned CPTAC3 75d4f8b1-11c7-4a0f-beac-ba3ab8286040 1582dc7cddc90b715ac6b7b9b752b620 {"aliquot_tag": "ALQ_fa14ca71", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05085.RNA-Seq.transcriptome.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.transcriptome.gdc_realn.bam 9313298244 BAM transcriptome harmonized CPTAC3 8216c670-da05-4fe0-bb2b-5c319408b58f 2af9a673f824e216ff767eb05b5911b9 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.RNA-Seq.transcriptome.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.transcriptome.gdc_realn.bam 12743935850 BAM transcriptome harmonized CPTAC3 ab3f20e8-e31f-48a0-ad8e-e0d20cd5b3af ea025bd3ffca5d6c4211b865718298b2 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor"} -C3N-05085.WGS.T C3N-05085 LSCC WGS tumor CPT0384250006 CPT0384250006.WholeGenome.RP-2158.bam 21211133335 BAM aligned CPTAC3 412d0c18-22a9-4147-8e19-a25d81f8c0ae 762a2a11059fd33a495ac7f242c50247 {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor"} -C3N-05085.WGS.T.hg38 C3N-05085 LSCC WGS tumor CPT0384250006 9ebe410e-0b99-4c9e-9022-6a721a498140_wgs_gdc_realn.bam 64551572586 BAM harmonized CPTAC3 5cb9a5ae-237f-41b0-9f23-2b3189a6fccd a0cdc729537a58fba6013faa4c510bc9 {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor"} -C3N-05085.WXS.A C3N-05085 LSCC WXS tissue_normal CPT0313370009 CPT0313370009.WholeExome.RP-1303.bam 21481632964 BAM aligned CPTAC3 34e0b32d-349d-404d-a76d-4d4ed7a903a7 86cede8f1fe10904fe4b708d1b1f643f {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.WXS.A.hg38 C3N-05085 LSCC WXS tissue_normal CPT0313370009 1a21506d-9b28-460a-8c27-8d35cfd1e3ba_wxs_gdc_realn.bam 29561603186 BAM harmonized CPTAC3 a984f9dd-ba41-4d8c-8dfe-dad9a3ceb3ad bab73de8fca3cfd6a48f7f5ab06541db {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05085.WXS.T C3N-05085 LSCC WXS tumor CPT0384250006 CPT0384250006.WholeExome.RP-1303.bam 18477809952 BAM aligned CPTAC3 38996dd7-ff1b-4837-a18f-4d15c318f6a3 ae0663dd14825e5ca0f5c8613c5e333a {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor"} -C3N-05085.WXS.T.hg38 C3N-05085 LSCC WXS tumor CPT0384250006 9ebe410e-0b99-4c9e-9022-6a721a498140_wxs_gdc_realn.bam 25516484420 BAM harmonized CPTAC3 15db306e-ca5c-4db6-8100-ecff5341b449 a49df19fbd583e7b51f3f9375b2dbf1d {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor"} -C3N-05093.RNA-Seq.chimeric.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.chimeric.gdc_realn.bam 108199374 BAM chimeric harmonized CPTAC3 8cc546b6-b107-4511-b46a-0c8a8663f444 b850530d0996412ed65af505aeba80d6 {"aliquot_tag": "ALQ_6b1fb84", "gdc_sample_type": "Primary Tumor"} -C3N-05093.RNA-Seq.genomic.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.genomic.gdc_realn.bam 6137995366 BAM genomic harmonized CPTAC3 d9cd0ab8-82c7-4b5e-9f9d-96f700cd2df0 5dbdea6d66440b4e5de66d48a2946cd3 {"aliquot_tag": "ALQ_6b1fb84", "gdc_sample_type": "Primary Tumor"} -C3N-05093.RNA-Seq.S29_R1.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R1_001.fastq.gz 4607138936 FASTQ S29_R1 unaligned CPTAC3 fc8f4596-2078-4645-b283-341feb6454ec 4e3f0ec226c40496c00e83856dfe59ce {"aliquot_tag": "ALQ_6b1fb84", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05093.RNA-Seq.S29_R2.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R2_001.fastq.gz 4716010063 FASTQ S29_R2 unaligned CPTAC3 548edcb4-222d-4c8b-aa4c-f47f3dd7c251 4e18f91c2542417e6e4c60b96d52dd75 {"aliquot_tag": "ALQ_6b1fb84", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05093.RNA-Seq.transcriptome.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.transcriptome.gdc_realn.bam 3796501198 BAM transcriptome harmonized CPTAC3 29ae4afc-8f92-4786-89b2-140553d9b1c3 aa6fca900dc8cdc0f2a6893ab2bca858 {"aliquot_tag": "ALQ_6b1fb84", "gdc_sample_type": "Primary Tumor"} -C3N-05097.RNA-Seq.chimeric.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.chimeric.gdc_realn.bam 138631748 BAM chimeric harmonized CPTAC3 63160a48-2a46-4a53-b1bd-a0bec26aa935 293f0e525305d9c4ffe72d1a27e37065 {"aliquot_tag": "ALQ_7c71a8e4", "gdc_sample_type": "Primary Tumor"} -C3N-05097.RNA-Seq.genomic.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.genomic.gdc_realn.bam 7718870447 BAM genomic harmonized CPTAC3 7f1a8eb0-70f4-48a1-a4ea-4aff792ce136 7bc040f3c7333e433393f1e67badf222 {"aliquot_tag": "ALQ_7c71a8e4", "gdc_sample_type": "Primary Tumor"} -C3N-05097.RNA-Seq.S41_R1.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R1_001.fastq.gz 5042843421 FASTQ S41_R1 unaligned CPTAC3 bb58cb9f-4672-4053-ace5-6fe7465c8b95 bdc69d85697b37cac140769f2c33ab8c {"aliquot_tag": "ALQ_7c71a8e4", "sample": "S41", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05097.RNA-Seq.S41_R2.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R2_001.fastq.gz 5145457253 FASTQ S41_R2 unaligned CPTAC3 c7a4c4e6-bb74-4557-8063-da980cead096 f8bf6cd78d662182ab059c4fac06f92a {"aliquot_tag": "ALQ_7c71a8e4", "sample": "S41", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05097.RNA-Seq.transcriptome.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.transcriptome.gdc_realn.bam 4455931015 BAM transcriptome harmonized CPTAC3 93d8dcfc-2378-4adc-8f3c-d80ecd9472fa 70a708a3f195245114a1c11171702d76 {"aliquot_tag": "ALQ_7c71a8e4", "gdc_sample_type": "Primary Tumor"} -C3N-05098.RNA-Seq.chimeric.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.chimeric.gdc_realn.bam 49516818 BAM chimeric harmonized CPTAC3 211ed634-27f9-4b57-9a91-31d1cd6cf41d 7fa2a5e94f7a70560ca79875a651fd15 {"aliquot_tag": "ALQ_f3315d44", "gdc_sample_type": "Primary Tumor"} -C3N-05098.RNA-Seq.genomic.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.genomic.gdc_realn.bam 6450987247 BAM genomic harmonized CPTAC3 b2ddc8da-5622-4239-ad1f-c8e8e9288832 362bb377693e66ffb7c674cf5b05214b {"aliquot_tag": "ALQ_f3315d44", "gdc_sample_type": "Primary Tumor"} -C3N-05098.RNA-Seq.S43_R1.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R1_001.fastq.gz 3423487170 FASTQ S43_R1 unaligned CPTAC3 ea740f15-a73a-486b-9ba9-0658e445d549 70ddb46b677ee3cdfc3f4fe859177aad {"aliquot_tag": "ALQ_f3315d44", "sample": "S43", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05098.RNA-Seq.S43_R2.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R2_001.fastq.gz 3615603410 FASTQ S43_R2 unaligned CPTAC3 6b76e88e-71f4-44f5-9be6-03662e92b514 4b3c0df0155b9bfc1d4fe19a56db9823 {"aliquot_tag": "ALQ_f3315d44", "sample": "S43", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05098.RNA-Seq.transcriptome.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.transcriptome.gdc_realn.bam 4512430992 BAM transcriptome harmonized CPTAC3 cdcede9c-3811-4031-871b-d2da63b4d2ec 817b38976b5ebee53dd95b66124e36be {"aliquot_tag": "ALQ_f3315d44", "gdc_sample_type": "Primary Tumor"} -C3N-05099.RNA-Seq.chimeric.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.chimeric.gdc_realn.bam 136136053 BAM chimeric harmonized CPTAC3 19bae85a-2c25-471e-8419-93fed7962041 9c6d031a92a4ba58a95ad2bf927ed220 {"aliquot_tag": "ALQ_89f10e24", "gdc_sample_type": "Primary Tumor"} -C3N-05099.RNA-Seq.genomic.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.genomic.gdc_realn.bam 7461347703 BAM genomic harmonized CPTAC3 0e86b18d-4298-48cf-9618-9c6218b83fe1 3ef4ba8a7f7e08bd34ddb7d9ca31a707 {"aliquot_tag": "ALQ_89f10e24", "gdc_sample_type": "Primary Tumor"} -C3N-05099.RNA-Seq.S15_R1.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R1_001.fastq.gz 4731151101 FASTQ S15_R1 unaligned CPTAC3 d05d7bf3-cb2b-442b-b220-71c2786c30b4 c16f5a72714c76ed1ed75ce3e1a7e7a5 {"aliquot_tag": "ALQ_89f10e24", "sample": "S15", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05099.RNA-Seq.S15_R2.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R2_001.fastq.gz 4806018097 FASTQ S15_R2 unaligned CPTAC3 f7ed7d7b-4897-41f2-b774-709dc3ad0d8a ae0f695c744d26f81540cdada5339c55 {"aliquot_tag": "ALQ_89f10e24", "sample": "S15", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05099.RNA-Seq.transcriptome.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.transcriptome.gdc_realn.bam 5960974803 BAM transcriptome harmonized CPTAC3 92548086-6437-4cdc-8c50-5d6f5ff33222 80a917a1d79ff78cc7263171e377c711 {"aliquot_tag": "ALQ_89f10e24", "gdc_sample_type": "Primary Tumor"} -C3N-05100.MethArray.Green.T C3N-05100 LSCC Methylation_Array tumor CPT0321680006 204372030023_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 42ea3db3-7878-4d91-b7df-10969ada1006 30a9c32459d689e4e3daf2fc43b3e232 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor"} -C3N-05100.MethArray.Red.T C3N-05100 LSCC Methylation_Array tumor CPT0321680006 204372030023_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 a42733c2-680c-48ae-9dc9-05063e929cb7 f7361203d4e0e9e65e189cfa3b49a2d1 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor"} -C3N-05100.miRNA-Seq.S21_L008_R1.T C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L008_R1_001.unaln.bam 205266159 BAM S21_L008_R1 unaligned CPTAC3 089f3849-cf1f-43fa-ac2a-5f52e90983be 0473fd72d896d6cf03b9da1e588a24c9 {"aliquot_tag": "ALQ_5aed7fb9", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05100.miRNA-Seq.T.hg38 C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 0337b011-ac73-49e8-b392-60604c3a9de4_mirnaseq_gdc_realn.bam 229694116 BAM harmonized CPTAC3 1c629d09-b8d4-4947-aba8-87570144fc1f 1b41bf24675d60bc5438d6d5b1cf8863 {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor"} -C3N-05100.RNA-Seq.chimeric.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.chimeric.gdc_realn.bam 29143412 BAM chimeric harmonized CPTAC3 6b3f355e-3464-4154-adb4-2aa21f428d77 9b5cda3de2da81d37f24dd388af9e6bb {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor"} -C3N-05100.RNA-Seq.genomic.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.genomic.gdc_realn.bam 7833790111 BAM genomic harmonized CPTAC3 8b10d7f4-8290-46db-bbb7-2d396ae3005a 68d236480d5fa48132b2302d4a9d3076 {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor"} -C3N-05100.RNA-Seq.S5_L002_R1.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R1_001.fastq.gz 3707066529 FASTQ S5_L002_R1 unaligned CPTAC3 94e80fa3-c4d8-4da0-97e7-da399c4939a1 d1815b8fb5167b5a84f3678434acaee4 {"aliquot_tag": "ALQ_5aed7fb9", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05100.RNA-Seq.S5_L002_R2.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R2_001.fastq.gz 4036803940 FASTQ S5_L002_R2 unaligned CPTAC3 b2c5daa7-707a-4c87-bf16-6b740134c2d1 f045608be98f734a412867a6c1c2c96a {"aliquot_tag": "ALQ_5aed7fb9", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05100.RNA-Seq.transcriptome.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.transcriptome.gdc_realn.bam 11720859979 BAM transcriptome harmonized CPTAC3 91b41102-cdb5-4de7-b897-0324ba85eed4 71de4ce1be44b01dbfc3f8b6bfff5cc4 {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor"} -C3N-05100.WGS.N C3N-05100 LSCC WGS blood_normal CPT0321700002 CPT0321700002.WholeGenome.RP-2158.bam 21048768435 BAM aligned CPTAC3 c101d28b-617b-4116-9e7a-fd62285e618c a11eb31e2ab754c9d7d9a06e58ec231f {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal"} -C3N-05100.WGS.N.hg38 C3N-05100 LSCC WGS blood_normal CPT0321700002 39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wgs_gdc_realn.bam 62286351996 BAM harmonized CPTAC3 b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f d84c0504175233379452d1717621ef46 {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal"} -C3N-05100.WGS.T C3N-05100 LSCC WGS tumor CPT0321680006 CPT0321680006.WholeGenome.RP-2158.bam 19457716420 BAM aligned CPTAC3 9d0e5861-56dd-4a2f-9116-5b46bca16e5a 9fa589440659bfbc2af17a9bedc8624b {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor"} -C3N-05100.WGS.T.hg38 C3N-05100 LSCC WGS tumor CPT0321680006 5ef62f88-5293-4a68-a523-50eacbd2dc9b_wgs_gdc_realn.bam 57763506632 BAM harmonized CPTAC3 e32667cf-b7d8-4ec2-a63a-17497134fd97 ba9021d94738e48f04aa2d8c66920b68 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor"} -C3N-05100.WXS.N C3N-05100 LSCC WXS blood_normal CPT0321700002 CPT0321700002.WholeExome.RP-1303.bam 38754948621 BAM aligned CPTAC3 14271093-70ba-4c84-8e18-5dbeb8e147b5 19c6fd77d7b53b764b461c9bc5af9acc {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal"} -C3N-05100.WXS.N.hg38 C3N-05100 LSCC WXS blood_normal CPT0321700002 39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wxs_gdc_realn.bam 52694556758 BAM harmonized CPTAC3 05fa94e1-da84-4597-97cb-63a97ddb857b 70107fb2e1cbfa8a153512ad98e9f8e0 {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal"} -C3N-05100.WXS.T C3N-05100 LSCC WXS tumor CPT0321680006 CPT0321680006.WholeExome.RP-1303.bam 19296245113 BAM aligned CPTAC3 5be5ff5d-0747-4e96-af04-8826353653d4 ff4ee76a5bd934ed907e29bc5ed8e1c9 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor"} -C3N-05100.WXS.T.hg38 C3N-05100 LSCC WXS tumor CPT0321680006 5ef62f88-5293-4a68-a523-50eacbd2dc9b_wxs_gdc_realn.bam 26509937987 BAM harmonized CPTAC3 675f7e6d-bbea-44d5-9d78-5c14892feab7 84b0fcb3b2d9fbf89429d603221757b5 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor"} -C3N-05114.MethArray.Green.T C3N-05114 GBM Methylation_Array tumor CPT0375840007 204930640011_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1040482c-23f2-4f97-866d-a254e656776b 68d023004d6c9da2c31e41f9b1d0417c {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor"} -C3N-05114.MethArray.Red.T C3N-05114 GBM Methylation_Array tumor CPT0375840007 204930640011_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 586fbbda-3b4b-408b-866b-3580f9ae5566 d805011d60c2a087189977be59e8b37a {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor"} -C3N-05114.miRNA-Seq.S3_L006_R1.T C3N-05114 GBM miRNA-Seq tumor CPT0375840010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGAGC_S3_L006_R1_001.unaln.bam 238207174 BAM S3_L006_R1 unaligned CPTAC3 b607ed44-4dd4-4dbe-9e3a-6053a2daf518 46edec62acab3aa914eb6356b98a11b0 {"aliquot_tag": "ALQ_797f505a", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05114.miRNA-Seq.T.hg38 C3N-05114 GBM miRNA-Seq tumor CPT0375840010 36569e13-7688-4fce-8fd0-4d0cedb599b3_mirnaseq_gdc_realn.bam 266581230 BAM harmonized CPTAC3 a8655809-53a8-4e3e-8f82-1f31ad01e9b8 5ab56f1b64ab8cdbb0d37b1e132346b8 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor"} -C3N-05114.RNA-Seq.chimeric.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.chimeric.gdc_realn.bam 382265048 BAM chimeric harmonized CPTAC3 fe01c20a-8021-4b17-a2b5-4bac8c2294e8 eae251992eb1dd60af52c918d2da9108 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor"} -C3N-05114.RNA-Seq.genomic.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.genomic.gdc_realn.bam 7585267874 BAM genomic harmonized CPTAC3 1c395db0-995b-4a65-93f0-026b54b12aaa d4deff61e01f8985e04a8a59850be894 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor"} -C3N-05114.RNA-Seq.S15_L004_R1.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ S15_L004_R1 unaligned CPTAC3 0a01510e-f773-49bb-b942-ed13ac1e72a2 7ccb79cf4feb43cb7a11de2c17862a64 {"aliquot_tag": "ALQ_797f505a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05114.RNA-Seq.S15_L004_R2.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ S15_L004_R2 unaligned CPTAC3 23d53980-2023-4c74-bb48-ff2282011226 6809a81e2988793b41f3ec0b1f4cf963 {"aliquot_tag": "ALQ_797f505a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05114.RNA-Seq.transcriptome.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.transcriptome.gdc_realn.bam 11492121319 BAM transcriptome harmonized CPTAC3 a4886476-606d-494e-a7b6-e6d4f87ae822 f353f4ed16c2cec7620b6cf453463ae4 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor"} -C3N-05114.WGS.N C3N-05114 GBM WGS blood_normal CPT0375900002 CPT0375900002.WholeGenome.RP-2158.bam 23591039617 BAM aligned CPTAC3 38162097-8649-4ff4-b8c4-c53b803608a5 ffaa27d9cfbcf74be380a13bcf015b81 {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal"} -C3N-05114.WGS.N.hg38 C3N-05114 GBM WGS blood_normal CPT0375900002 e8446ae9-fcf6-48e3-8073-0b0ba6396588_wgs_gdc_realn.bam 69989761070 BAM harmonized CPTAC3 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae c8a12e347e6a8c8d117f11f16ae325e0 {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal"} -C3N-05114.WGS.T C3N-05114 GBM WGS tumor CPT0375840007 CPT0375840007.WholeGenome.RP-2158.bam 29844175746 BAM aligned CPTAC3 0d57def0-92d4-4b0f-8e0b-a73387c3674b 38179ed8709560da2a7c0f0b1d4e1139 {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor"} -C3N-05114.WGS.T.hg38 C3N-05114 GBM WGS tumor CPT0375840007 5169afe8-1fb1-459b-b5b6-f28129bc1de1_wgs_gdc_realn.bam 92653420444 BAM harmonized CPTAC3 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 87229f77c993c1833ab0bab0f4c808cd {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor"} -C3N-05114.WXS.N C3N-05114 GBM WXS blood_normal CPT0375900002 CPT0375900002.WholeExome.RP-1303.bam 25448556617 BAM aligned CPTAC3 d2b66007-8e18-4443-b239-99447327d37c f336660243d5a75ff6ca9659c6400561 {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal"} -C3N-05114.WXS.N.hg38 C3N-05114 GBM WXS blood_normal CPT0375900002 e8446ae9-fcf6-48e3-8073-0b0ba6396588_wxs_gdc_realn.bam 34460031755 BAM harmonized CPTAC3 ec6ae616-4341-4d27-8a50-698388968128 ee55ebbdcfa6374f1cc77c09412d69ae {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal"} -C3N-05114.WXS.T C3N-05114 GBM WXS tumor CPT0375840007 CPT0375840007.WholeExome.RP-1303.bam 20791720954 BAM aligned CPTAC3 aeeef8e6-c57b-4416-ba7a-930e5a820a20 df769d0aea8660c90786828fe21f1b79 {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor"} -C3N-05114.WXS.T.hg38 C3N-05114 GBM WXS tumor CPT0375840007 5169afe8-1fb1-459b-b5b6-f28129bc1de1_wxs_gdc_realn.bam 29470990817 BAM harmonized CPTAC3 bede02c2-63fa-4694-bf71-778ceb6bf864 dd259ea57712c503b7a0d6ff77eee246 {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor"} -C3N-05135.MethArray.Green.T C3N-05135 GBM Methylation_Array tumor CPT0376380005 204930640064_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2d48f340-8fd0-4a43-8883-506e23a70576 154a118099eb0d891bcb04362aa569ba {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor"} -C3N-05135.MethArray.Red.T C3N-05135 GBM Methylation_Array tumor CPT0376380005 204930640064_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 79b850bd-e2d2-4036-8c50-d93460a66c95 fb9822ceea3e307aca9050d6df6d88b6 {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor"} -C3N-05135.miRNA-Seq.S4_L007_R1.T C3N-05135 GBM miRNA-Seq tumor CPT0376380009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATTCCT_S4_L007_R1_001.unaln.bam 212589586 BAM S4_L007_R1 unaligned CPTAC3 42853fb5-69b7-4547-8a07-662ee45a6ff1 9ec463c4505a174611276ec332863211 {"aliquot_tag": "ALQ_8767dee0", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05135.miRNA-Seq.T.hg38 C3N-05135 GBM miRNA-Seq tumor CPT0376380009 61831f48-b9d2-418c-83e1-abccebef1bc5_mirnaseq_gdc_realn.bam 236078424 BAM harmonized CPTAC3 3280de74-19ac-4d09-b76b-63377904592e a22c6d823d26b91d176f0c936405138d {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor"} -C3N-05135.RNA-Seq.chimeric.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.chimeric.gdc_realn.bam 646868456 BAM chimeric harmonized CPTAC3 d30d77cb-a85d-4617-9207-ddf50e849c3c f45692ba8f60948bf6488501860423a7 {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor"} -C3N-05135.RNA-Seq.genomic.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.genomic.gdc_realn.bam 7837920975 BAM genomic harmonized CPTAC3 ca7e72d4-c212-400f-b47d-735fd40e4dce 606e6785bdc6eb6a37d9ef10cc3cf94a {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor"} -C3N-05135.RNA-Seq.S14_L004_R1.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ S14_L004_R1 unaligned CPTAC3 f923cf94-4f61-4f33-8cab-5328f7853280 d2d92fa1c53cb23b60d1b41b5d4dbed5 {"aliquot_tag": "ALQ_8767dee0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05135.RNA-Seq.S14_L004_R2.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ S14_L004_R2 unaligned CPTAC3 bba10325-9b48-47e2-8983-b3687f010e06 3466d03aec58e9bb0ce0a17601332f9a {"aliquot_tag": "ALQ_8767dee0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05135.RNA-Seq.transcriptome.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.transcriptome.gdc_realn.bam 8284987096 BAM transcriptome harmonized CPTAC3 c317bbb9-01b9-4c01-843c-7a51dd57309e f5bfa0259dfa1478081006723ba7ea8c {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor"} -C3N-05135.WGS.N C3N-05135 GBM WGS blood_normal CPT0376440002 CPT0376440002.WholeGenome.RP-2158.bam 23324063857 BAM aligned CPTAC3 645e182c-a2ad-4329-8e06-7b7798b1b827 9e38921d6dae8efa715300066372cefb {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal"} -C3N-05135.WGS.N.hg38 C3N-05135 GBM WGS blood_normal CPT0376440002 d69369cc-a994-4e4f-af13-4948398b347b_wgs_gdc_realn.bam 68301546626 BAM harmonized CPTAC3 5dc48332-6ed2-417b-958f-c1595135fa9e fb78af873c3353c51b4c3adffe081ec9 {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal"} -C3N-05135.WGS.T C3N-05135 GBM WGS tumor CPT0376380005 CPT0376380005.WholeGenome.RP-2158.bam 26465673099 BAM aligned CPTAC3 bcb1ec0a-99ac-4ca9-961a-4b5ab271f384 4c2676dd4e90a86bdfd2aba23a19a69a {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor"} -C3N-05135.WGS.T.hg38 C3N-05135 GBM WGS tumor CPT0376380005 f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wgs_gdc_realn.bam 79724813019 BAM harmonized CPTAC3 c50b159a-8d6b-4760-afff-db1dce9ff738 4b7f2e93e3699552bd91f60953be22b0 {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor"} -C3N-05135.WXS.N C3N-05135 GBM WXS blood_normal CPT0376440002 CPT0376440002.WholeExome.RP-1303.bam 25191303128 BAM aligned CPTAC3 1d01b9a3-f8de-43d8-9f28-277c29919db9 97b524051c0866f89b6af69556479a43 {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal"} -C3N-05135.WXS.N.hg38 C3N-05135 GBM WXS blood_normal CPT0376440002 d69369cc-a994-4e4f-af13-4948398b347b_wxs_gdc_realn.bam 34914215861 BAM harmonized CPTAC3 98ae81ee-90ef-4c56-8a69-5c5b73fecfec d964c89e7489825f5bee2d3443060b98 {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal"} -C3N-05135.WXS.T C3N-05135 GBM WXS tumor CPT0376380005 CPT0376380005.WholeExome.RP-1303.bam 23767669742 BAM aligned CPTAC3 9ae07a67-852d-4882-bd82-b1567a9d411d f7c5c2da7aa083b3a973b0e96b4111fd {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor"} -C3N-05135.WXS.T.hg38 C3N-05135 GBM WXS tumor CPT0376380005 f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wxs_gdc_realn.bam 31921769918 BAM harmonized CPTAC3 e098c85d-4df0-4dfb-84e9-3bf91a4e3491 979be17975014a8e5f5f960338f107be {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor"} -C3N-05629.MethArray.Green.A C3N-05629 LSCC Methylation_Array tissue_normal CPT0321770006 204372030090_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6b68145b-a296-4fab-8e94-f5f8d325faf7 607b624f10a0e5e83411f04c5aac528c {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.MethArray.Green.T C3N-05629 LSCC Methylation_Array tumor CPT0321760006 204367490066_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 543b66ab-9f4f-49d3-865e-e6cbafe9419a 4bc8903d923903e6cd7d14fe2168e384 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor"} -C3N-05629.MethArray.Red.A C3N-05629 LSCC Methylation_Array tissue_normal CPT0321770006 204372030090_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 a660e408-0bb5-45a3-b749-ea1709dd30b0 9d82b2850bada7be0d9751f1bc1b8532 {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.MethArray.Red.T C3N-05629 LSCC Methylation_Array tumor CPT0321760006 204367490066_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 a8a9573d-404b-4677-bc06-aa602cefba95 6455b01371f71d8c3ebc8e940ce04205 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor"} -C3N-05629.miRNA-Seq.A.hg38 C3N-05629 LSCC miRNA-Seq tissue_normal CPT0321770009 b2973002-6eba-4812-8ab4-d07288040c7f_mirnaseq_gdc_realn.bam 286232027 BAM harmonized CPTAC3 93aff772-d665-49d9-9065-0e34c106c1f2 be634416488ca5d3192b5af9a04a9660 {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.miRNA-Seq.S10_L001_R1.A C3N-05629 LSCC miRNA-Seq tissue_normal CPT0321770009 200325_UNC31-K00269_0272_AHHC2NBBXY_CATGGC_S10_L001_R1_001.unaln.bam 254242993 BAM S10_L001_R1 unaligned CPTAC3 fd7c5570-69f2-4cb7-a81b-69e968eac396 31335d0b958175dbfc1ec2791f95d87c {"aliquot_tag": "ALQ_13e13bcd", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.miRNA-Seq.S22_L008_R1.T C3N-05629 LSCC miRNA-Seq tumor CPT0321760009 200224_UNC31-K00269_0267_AHC722BBXY_CGTACG_S22_L008_R1_001.unaln.bam 173798048 BAM S22_L008_R1 unaligned CPTAC3 5514129f-9993-4002-83a2-ddeeeed401d7 ef606d3f015f18f809c0de4d154e4c64 {"aliquot_tag": "ALQ_2e81127d", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05629.miRNA-Seq.T.hg38 C3N-05629 LSCC miRNA-Seq tumor CPT0321760009 1028ebdd-8b23-4022-9c09-5bebcf3c748c_mirnaseq_gdc_realn.bam 198771303 BAM harmonized CPTAC3 a4946480-8392-418f-af8b-807af46b7059 f0176290212ef0c1f4b3360101f04243 {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor"} -C3N-05629.RNA-Seq.chimeric.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.chimeric.gdc_realn.bam 138675380 BAM chimeric harmonized CPTAC3 98cf8e88-ce0f-425b-8b68-ffe0fcf16479 864d42f073f6146746196732fec44326 {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.RNA-Seq.chimeric.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.chimeric.gdc_realn.bam 21157110 BAM chimeric harmonized CPTAC3 13a5856e-dbf1-473b-986c-b04505db208f b279b4c3753880630ac380e13ee4b200 {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor"} -C3N-05629.RNA-Seq.genomic.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.genomic.gdc_realn.bam 7593938163 BAM genomic harmonized CPTAC3 c5d4328f-15dc-4c1e-8ee3-b2e283ba4016 4d6ecc20d95cc5cf8855bd5bfa1dbafd {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.RNA-Seq.genomic.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.genomic.gdc_realn.bam 5104897290 BAM genomic harmonized CPTAC3 d253e112-22d6-4668-8263-14ee9d20b286 5da48197bf58e3beb7ae96bc91534dcf {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor"} -C3N-05629.RNA-Seq.S18_L005_R1.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R1_001.fastq.gz 3782320688 FASTQ S18_L005_R1 unaligned CPTAC3 1a8f0eef-c9ac-4a60-bb7f-d7898d725906 a062246f5bc7b5accf678c4f7a64e6bf {"aliquot_tag": "ALQ_13e13bcd", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.RNA-Seq.S18_L005_R2.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R2_001.fastq.gz 3985887125 FASTQ S18_L005_R2 unaligned CPTAC3 720bf299-c055-4193-98ef-eb0a651454bc 374a2a135288bb590ec601cb6dd22e81 {"aliquot_tag": "ALQ_13e13bcd", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.RNA-Seq.S6_L002_R1.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R1_001.fastq.gz 2467086846 FASTQ S6_L002_R1 unaligned CPTAC3 7f49c621-13e9-4e66-90e3-afc5545d86de de49766cbe860c648571c50083ee6fd3 {"aliquot_tag": "ALQ_2e81127d", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05629.RNA-Seq.S6_L002_R2.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R2_001.fastq.gz 2680135041 FASTQ S6_L002_R2 unaligned CPTAC3 8da05c95-0d72-4ac1-84f7-439baa0626f7 792bb14235051c7cc28529648f2e0c67 {"aliquot_tag": "ALQ_2e81127d", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05629.RNA-Seq.transcriptome.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.transcriptome.gdc_realn.bam 9859804329 BAM transcriptome harmonized CPTAC3 688c0d05-523c-4e6d-ab35-b53a434ac188 9865a5c4ce5b7ea5c7d6e8b0b0190bd0 {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.RNA-Seq.transcriptome.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.transcriptome.gdc_realn.bam 7492736514 BAM transcriptome harmonized CPTAC3 a241bd02-8323-45bf-b45d-3cf23e06568d ed83d7345ee7fd47fe625af5947a768b {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor"} -C3N-05629.WGS.N C3N-05629 LSCC WGS blood_normal CPT0321800002 CPT0321800002.WholeGenome.RP-2158.bam 25902474734 BAM aligned CPTAC3 b584ba5a-f4cf-45db-a416-bde48302c251 2c9e475210c1fc1695d7e8a9dcec44ad {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal"} -C3N-05629.WGS.N.hg38 C3N-05629 LSCC WGS blood_normal CPT0321800002 52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wgs_gdc_realn.bam 75748276047 BAM harmonized CPTAC3 f50609fc-9226-4f82-a225-48e4491d6e1a 9a6061f78f38ceb4c5d5eb36dbd2da82 {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal"} -C3N-05629.WGS.T C3N-05629 LSCC WGS tumor CPT0321760006 CPT0321760006.WholeGenome.RP-2158.bam 21989426422 BAM aligned CPTAC3 05d48fce-fcee-410e-a1c2-1eee0b197061 4f4736a09da0381d54c31b059942db96 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor"} -C3N-05629.WGS.T.hg38 C3N-05629 LSCC WGS tumor CPT0321760006 392cdd57-f49f-436c-88b4-556f2a60586a_wgs_gdc_realn.bam 64929840130 BAM harmonized CPTAC3 c1ae0af0-8e3d-48fd-81da-7364eaca0c00 27bfb8ba6367b5311312d96ea3e3f25d {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor"} -C3N-05629.WXS.A C3N-05629 LSCC WXS tissue_normal CPT0321770006 CPT0321770006.WholeExome.RP-1303.bam 22527659093 BAM aligned CPTAC3 fa90e122-5917-4f5c-b41e-1c2332206a71 0ab055497497378b3c1a65f8682ed14a {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.WXS.A.hg38 C3N-05629 LSCC WXS tissue_normal CPT0321770006 a1f770b1-af67-4346-bbc2-00c8da1ced09_wxs_gdc_realn.bam 31587980448 BAM harmonized CPTAC3 2f022282-6285-40d0-862f-a1785be0f24b 86614cd4394ab5527ab78e89e3f5c9fa {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05629.WXS.N C3N-05629 LSCC WXS blood_normal CPT0321800002 CPT0321800002.WholeExome.RP-1303.bam 22001185146 BAM aligned CPTAC3 b7cdef42-55a8-49c0-a8eb-b2c22fc4949b b955970b83e5bae0952a9b52f94d6126 {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal"} -C3N-05629.WXS.N.hg38 C3N-05629 LSCC WXS blood_normal CPT0321800002 52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wxs_gdc_realn.bam 29425665424 BAM harmonized CPTAC3 5858e7a0-8245-4e5f-ab44-f1d59930ba6d bd9e164b7a875d102890bfd88f369c55 {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal"} -C3N-05629.WXS.T C3N-05629 LSCC WXS tumor CPT0321760006 CPT0321760006.WholeExome.RP-1303.bam 41572110141 BAM aligned CPTAC3 129764fd-45fa-4597-81ab-84dec556f710 2fbd06437bf0f65caede964f3c0d1773 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor"} -C3N-05629.WXS.T.hg38 C3N-05629 LSCC WXS tumor CPT0321760006 392cdd57-f49f-436c-88b4-556f2a60586a_wxs_gdc_realn.bam 57779377757 BAM harmonized CPTAC3 602b4fc0-be3b-43af-9651-9b78edf6e935 05000c4b3736dfabdd08d13359258c36 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor"} -C3N-05911.MethArray.Green.A C3N-05911 LSCC Methylation_Array tissue_normal CPT0321870006 204930640042_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6671f685-f478-49c1-82f9-5149db689aa8 47285c88808e69081da0dff962854421 {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.MethArray.Green.T C3N-05911 LSCC Methylation_Array tumor CPT0384280006 204930640023_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cfd1a0cd-56f1-42d5-bc6b-8241577345ce e4666304efd25f98e755cc0aaa9a0a20 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor"} -C3N-05911.MethArray.Red.A C3N-05911 LSCC Methylation_Array tissue_normal CPT0321870006 204930640042_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 1c811e33-42b4-4103-8b83-324c955ebed9 d8075a08f703e6cd01a6fb9ca5948ed9 {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.MethArray.Red.T C3N-05911 LSCC Methylation_Array tumor CPT0384280006 204930640023_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 4446a24e-7b63-4a23-a69c-1b129b6da22a 420663b6f4796483e4f6e5b1e4f84893 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor"} -C3N-05911.miRNA-Seq.A.hg38 C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 8bbcbd7c-552f-4614-beb1-784a612d7a45_mirnaseq_gdc_realn.bam 229055485 BAM harmonized CPTAC3 47330cbc-de15-4de1-8354-2b54d3874d3c c9b363256874422940d5b30522885544 {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.miRNA-Seq.S24_L007_R1.T C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTCAA_S24_L007_R1_001.unaln.bam 335161236 BAM S24_L007_R1 unaligned CPTAC3 50689b11-63be-4b1b-aa4e-0bc0c1cbb938 44d4de901708dbca725a4c31f0c14135 {"aliquot_tag": "ALQ_2840ec0", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05911.miRNA-Seq.S27_L007_R1.A C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGATC_S27_L007_R1_001.unaln.bam 209412885 BAM S27_L007_R1 unaligned CPTAC3 e7ac4a78-57e6-4220-a4d7-102c432fb9cb c1dfa639e8c7cd83e82fe3740bcc92d3 {"aliquot_tag": "ALQ_e2b78918", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.miRNA-Seq.T.hg38 C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 982cb22a-ef85-47bb-ac67-3681731e6110_mirnaseq_gdc_realn.bam 359864120 BAM harmonized CPTAC3 cef06ca3-dc8e-4834-b757-e323a3abada9 a46f78f678929cac2590fec4db3d97e1 {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor"} -C3N-05911.RNA-Seq.chimeric.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.chimeric.gdc_realn.bam 431008863 BAM chimeric harmonized CPTAC3 b5aedd37-216f-4914-b920-e28be9faaba0 18fbde517880a9263748b07f104a4725 {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.RNA-Seq.chimeric.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.chimeric.gdc_realn.bam 348158223 BAM chimeric harmonized CPTAC3 1d8c14b3-fc56-475d-884d-ac9fc9cc0590 3dadb17d4350c32c0600c8d9d041fbd2 {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor"} -C3N-05911.RNA-Seq.genomic.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.genomic.gdc_realn.bam 10520732225 BAM genomic harmonized CPTAC3 9df5e8d2-2149-4f64-bda1-448835f49feb 5ef008a620c785764273c4a16b11aa1f {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.RNA-Seq.genomic.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.genomic.gdc_realn.bam 6778537793 BAM genomic harmonized CPTAC3 2f380c4a-a557-4be3-89cc-cf3bfc986c79 60e370d9dcf9de802a1ab32e09b63c9b {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor"} -C3N-05911.RNA-Seq.S4_L001_R1.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ S4_L001_R1 unaligned CPTAC3 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 {"aliquot_tag": "ALQ_2840ec0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05911.RNA-Seq.S4_L001_R2.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ S4_L001_R2 unaligned CPTAC3 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d {"aliquot_tag": "ALQ_2840ec0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05911.RNA-Seq.S7_L002_R1.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 5346921141 FASTQ S7_L002_R1 unaligned CPTAC3 a0f2d25e-3679-4976-a59f-b73553463131 5d56182edf28334b2142d3262555ea1c {"aliquot_tag": "ALQ_e2b78918", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.RNA-Seq.S7_L002_R2.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ S7_L002_R2 unaligned CPTAC3 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 {"aliquot_tag": "ALQ_e2b78918", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.RNA-Seq.transcriptome.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.transcriptome.gdc_realn.bam 14060414532 BAM transcriptome harmonized CPTAC3 53b33e29-fa56-4557-9429-367a8244e238 9a34daeb90a2a84bef8c37f161a9f6a7 {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.RNA-Seq.transcriptome.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.transcriptome.gdc_realn.bam 12220646917 BAM transcriptome harmonized CPTAC3 7a679205-3909-4152-9e18-ee23ce3e32cf 9f59655ba10889672857b945da48e9ac {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor"} -C3N-05911.WGS.N C3N-05911 LSCC WGS blood_normal CPT0321900002 CPT0321900002.WholeGenome.RP-2158.bam 25580109842 BAM aligned CPTAC3 8add1311-5ba7-4fa2-8591-ef551f8ea960 d061d6989aa02ee2496acc890a65d836 {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal"} -C3N-05911.WGS.N.hg38 C3N-05911 LSCC WGS blood_normal CPT0321900002 03bad097-34d3-4e30-ad80-825f378201a6_wgs_gdc_realn.bam 76481181886 BAM harmonized CPTAC3 f9f9435b-e4de-4034-90ef-6bc10e3ec92f 29e91ba7f23f27e64706e93083be9ddf {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal"} -C3N-05911.WGS.T C3N-05911 LSCC WGS tumor CPT0384280006 CPT0384280006.WholeGenome.RP-2158.bam 23760701955 BAM aligned CPTAC3 4b245764-6fae-4ee4-8f8a-5ea6a7da4a7f 6d6be5a3643206b7ea437f2390ebf2d5 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor"} -C3N-05911.WGS.T.hg38 C3N-05911 LSCC WGS tumor CPT0384280006 a583d581-59a9-473e-b9ab-bb07c3506991_wgs_gdc_realn.bam 66745255528 BAM harmonized CPTAC3 bd088e73-2480-4c6a-bfed-768b218e4dec cd781939af6d680f062758098493a277 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor"} -C3N-05911.WXS.A C3N-05911 LSCC WXS tissue_normal CPT0321870006 CPT0321870006.WholeExome.RP-1303.bam 21699064525 BAM aligned CPTAC3 d32c097e-ef8a-4061-ac06-da419499d068 e2712f3dda8a311665c7793a3a95eb0f {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.WXS.A.hg38 C3N-05911 LSCC WXS tissue_normal CPT0321870006 2e89b813-04a1-4093-be70-dd4300364617_wxs_gdc_realn.bam 29873356816 BAM harmonized CPTAC3 96b1c4dc-3a6c-476c-9e1f-2f063c7ca0be 0282945c5eaa84efa3bbf771b6d528a4 {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05911.WXS.N C3N-05911 LSCC WXS blood_normal CPT0321900002 CPT0321900002.WholeExome.RP-1303.bam 24715994767 BAM aligned CPTAC3 90062731-21cb-411a-aa06-8d645b53633d 4e4b5bb3703f9326579a013b4dc641a8 {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal"} -C3N-05911.WXS.N.hg38 C3N-05911 LSCC WXS blood_normal CPT0321900002 03bad097-34d3-4e30-ad80-825f378201a6_wxs_gdc_realn.bam 33849560140 BAM harmonized CPTAC3 28e7017c-0019-4497-b317-09ff85ce500c a57fd8791e8cf938dd7eeaeb36785a3e {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal"} -C3N-05911.WXS.T C3N-05911 LSCC WXS tumor CPT0384280006 CPT0384280006.WholeExome.RP-1303.bam 31272418772 BAM aligned CPTAC3 c88fe497-d5ef-4b4a-a28e-52f6e4d6834f d01995d54f1ea43faaaf551c1d0411de {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor"} -C3N-05911.WXS.T.hg38 C3N-05911 LSCC WXS tumor CPT0384280006 a583d581-59a9-473e-b9ab-bb07c3506991_wxs_gdc_realn.bam 43571314276 BAM harmonized CPTAC3 ad1b9d7f-9680-4c37-87e9-d9018c5e2487 31bdaf7ee5260907cdf9958ed6a8068c {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor"} -C3N-05914.MethArray.Green.A C3N-05914 LSCC Methylation_Array tissue_normal CPT0322020006 204372030090_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d0164af3-cefb-46d3-b903-c0b749106a98 31382a95b6296dd7c5cf380e9ea81842 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.MethArray.Green.T C3N-05914 LSCC Methylation_Array tumor CPT0322010006 204367490090_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 510ff8df-45b6-4d5e-b111-4e903d5bb900 99c11d9a89f102ac8fe9558ebb6013d0 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor"} -C3N-05914.MethArray.Red.A C3N-05914 LSCC Methylation_Array tissue_normal CPT0322020006 204372030090_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 d760444a-9029-4c3c-a9f5-8fc189c55243 9557107e7fd0e94d2ebb4cf77acca921 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.MethArray.Red.T C3N-05914 LSCC Methylation_Array tumor CPT0322010006 204367490090_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 b068e432-3af2-4377-adda-326276089788 6611e3789381f1c436b17e0bdd7897ab {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor"} -C3N-05914.miRNA-Seq.A.hg38 C3N-05914 LSCC miRNA-Seq tissue_normal CPT0322020009 1d7e1bbf-cfaa-4c41-a5aa-9421e23a7bb4_mirnaseq_gdc_realn.bam 280267722 BAM harmonized CPTAC3 80f93150-ede2-4400-ad96-b084ef83c68b b15e69eb9b1878a44291cc74cbfc24a2 {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.miRNA-Seq.S11_L001_R1.A C3N-05914 LSCC miRNA-Seq tissue_normal CPT0322020009 200325_UNC31-K00269_0272_AHHC2NBBXY_CATTTT_S11_L001_R1_001.unaln.bam 253845612 BAM S11_L001_R1 unaligned CPTAC3 d1bfcda8-a0e7-486c-a75c-c6aa2abf1d20 4ed74a0f2c122765a34923a0a6588e1c {"aliquot_tag": "ALQ_f7ec9e98", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.miRNA-Seq.S23_L008_R1.T C3N-05914 LSCC miRNA-Seq tumor CPT0322010009 200224_UNC31-K00269_0267_AHC722BBXY_GAGTGG_S23_L008_R1_001.unaln.bam 198641139 BAM S23_L008_R1 unaligned CPTAC3 3e90ad97-3e9f-4f35-b740-8dffbed311e6 b7f82613524d32ae6ab63b4377483c0e {"aliquot_tag": "ALQ_b04ce448", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05914.miRNA-Seq.T.hg38 C3N-05914 LSCC miRNA-Seq tumor CPT0322010009 62f8f709-a6e7-4603-b9c3-30bd40db2b18_mirnaseq_gdc_realn.bam 221125816 BAM harmonized CPTAC3 82538b6f-3a7c-4ff6-90f8-d353d6c692a6 04a019c5d388f33d5ba33c10eae93d93 {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor"} -C3N-05914.RNA-Seq.chimeric.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.chimeric.gdc_realn.bam 92153015 BAM chimeric harmonized CPTAC3 4b6d974b-c7cd-4a22-b08a-eb378dcd612e f5d99ca424e82a71047a27d3fbbf0818 {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.RNA-Seq.chimeric.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.chimeric.gdc_realn.bam 51184185 BAM chimeric harmonized CPTAC3 0efb96f4-6376-46ff-9339-e72bb6d8e355 b5544c4a6f324dae1c503dca7273cb16 {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor"} -C3N-05914.RNA-Seq.genomic.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.genomic.gdc_realn.bam 6937340639 BAM genomic harmonized CPTAC3 ea140e7b-bbb9-45cf-bd32-7cdbafc81b64 db4b851e0c32c5108dd3eb0c6b36747d {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.RNA-Seq.genomic.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.genomic.gdc_realn.bam 10907929736 BAM genomic harmonized CPTAC3 f147d42e-11a3-4081-a0c4-62f6e1726f9e ebfa067ad466bb9ab2c60ad33ec756dc {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor"} -C3N-05914.RNA-Seq.S19_L005_R1.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R1_001.fastq.gz 3400862397 FASTQ S19_L005_R1 unaligned CPTAC3 58847338-77fa-4225-ae9a-d7cabe9abcc3 cd894b5a439454dc9fe082165420865d {"aliquot_tag": "ALQ_f7ec9e98", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.RNA-Seq.S19_L005_R2.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R2_001.fastq.gz 3556116993 FASTQ S19_L005_R2 unaligned CPTAC3 a2209efe-30e2-43b0-88d0-736412de5aaa a1133fdf11e9e86422bd6148babb595c {"aliquot_tag": "ALQ_f7ec9e98", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.RNA-Seq.S7_L002_R1.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 5267685992 FASTQ S7_L002_R1 unaligned CPTAC3 42619f5f-391a-4775-a515-1b5714a90f1b 42e685f48158091e501cd860d394ce0b {"aliquot_tag": "ALQ_b04ce448", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05914.RNA-Seq.S7_L002_R2.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 5750197657 FASTQ S7_L002_R2 unaligned CPTAC3 3931c065-87df-472d-9583-a9be46390ee2 9d1cb10fc438db736a910c8425929c5f {"aliquot_tag": "ALQ_b04ce448", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05914.RNA-Seq.transcriptome.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.transcriptome.gdc_realn.bam 10082282876 BAM transcriptome harmonized CPTAC3 dac5a4b7-675e-40bc-a97c-9e8d99c680e3 9329e961518a9e5398fa394531d72bf4 {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.RNA-Seq.transcriptome.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.transcriptome.gdc_realn.bam 13983768268 BAM transcriptome harmonized CPTAC3 8aedb480-0860-4300-a50f-155b72675a8a b082aab384c8c6b0586d9dc4ddd367b3 {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor"} -C3N-05914.WGS.N C3N-05914 LSCC WGS blood_normal CPT0322050002 CPT0322050002.WholeGenome.RP-2158.bam 23229715209 BAM aligned CPTAC3 ed727cd1-4f92-4f4a-8de5-b393ef901fa5 c34e9e068a7f6d8675285ee98ea1ae61 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal"} -C3N-05914.WGS.N.hg38 C3N-05914 LSCC WGS blood_normal CPT0322050002 8f68f68a-13a5-4085-a115-17a6701ab6fd_wgs_gdc_realn.bam 67977021003 BAM harmonized CPTAC3 a5b9dad9-61b5-4b00-b76e-d1964d9932bb a842e826b2363e2677297c5c90a14f69 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal"} -C3N-05914.WGS.T C3N-05914 LSCC WGS tumor CPT0322010006 CPT0322010006.WholeGenome.RP-2158.bam 22813058414 BAM aligned CPTAC3 43e756e2-8ea2-4a9e-ba9b-81afc437782d 21a6f1c0b18a3ffb0180b59c02663bf6 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor"} -C3N-05914.WGS.T.hg38 C3N-05914 LSCC WGS tumor CPT0322010006 50080744-d8e0-430b-93a5-77eddd53834b_wgs_gdc_realn.bam 68191898266 BAM harmonized CPTAC3 e7d3a961-5650-41cd-856b-3073994a9331 ce3c392c4e1e02cbc9d22bc9c033ea69 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor"} -C3N-05914.WXS.A C3N-05914 LSCC WXS tissue_normal CPT0322020006 CPT0322020006.WholeExome.RP-1303.bam 36726728652 BAM aligned CPTAC3 5b551d44-9864-4f54-ad1d-b60ef1046e5c e66b2318a65cb185ddc76c37f7499c39 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.WXS.A.hg38 C3N-05914 LSCC WXS tissue_normal CPT0322020006 8a6133ec-b7d7-41cc-9f06-fdde732e96af_wxs_gdc_realn.bam 51266147966 BAM harmonized CPTAC3 ef2b7fbd-32ef-41cd-805d-e7b9365644e3 8300d936117be6717d8d645d9ad0c2c9 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05914.WXS.N C3N-05914 LSCC WXS blood_normal CPT0322050002 CPT0322050002.WholeExome.RP-1303.bam 23391847397 BAM aligned CPTAC3 0de1bd67-5646-4e9b-9fc8-131bf2c6a5fa a26eb2b149ce409c0534ba2d49665958 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal"} -C3N-05914.WXS.N.hg38 C3N-05914 LSCC WXS blood_normal CPT0322050002 8f68f68a-13a5-4085-a115-17a6701ab6fd_wxs_gdc_realn.bam 31782809625 BAM harmonized CPTAC3 94f7165c-e916-4787-a759-5344c20f038f d6f7e4c316a24771aeeafa0f7c563876 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal"} -C3N-05914.WXS.T C3N-05914 LSCC WXS tumor CPT0322010006 CPT0322010006.WholeExome.RP-1303.bam 38552678628 BAM aligned CPTAC3 ed188548-0bd3-4125-bf7d-80b0cea276a0 16edbf3efaa98faec8eccdb267f4b285 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor"} -C3N-05914.WXS.T.hg38 C3N-05914 LSCC WXS tumor CPT0322010006 50080744-d8e0-430b-93a5-77eddd53834b_wxs_gdc_realn.bam 54053523042 BAM harmonized CPTAC3 758fbdf5-bb70-49dc-99b1-380d4fb1fdda ab8fdc6f9401360497446f1f5d4d53d0 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor"} -C3N-05915.MethArray.Green.A C3N-05915 LSCC Methylation_Array tissue_normal CPT0322070006 204372030085_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e496ff1a-24db-4c8e-9f71-b923549cd0f5 4a07c179602ba2534170646570b3948e {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.MethArray.Green.T C3N-05915 LSCC Methylation_Array tumor CPT0322060006 204367490043_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5287386b-d2a2-42d0-8d2d-6e56e501ae42 98fb28112ccd94441e2ab2a1b550b963 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor"} -C3N-05915.MethArray.Red.A C3N-05915 LSCC Methylation_Array tissue_normal CPT0322070006 204372030085_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 c0ecf474-f85b-4d20-8c5d-1bfb8f78a032 5dc6110aaf3c487d5d87184a4309c674 {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.MethArray.Red.T C3N-05915 LSCC Methylation_Array tumor CPT0322060006 204367490043_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 c24c7ed8-0eb0-41fc-b553-283ecf7fe07d 729a5faa242dae3fec9a078b4860c8c3 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor"} -C3N-05915.miRNA-Seq.A.hg38 C3N-05915 LSCC miRNA-Seq tissue_normal CPT0322070009 85f8793d-2436-44cc-a6be-cb2f443896b8_mirnaseq_gdc_realn.bam 257121883 BAM harmonized CPTAC3 b61bdd84-a1f5-44b4-b65f-772becd8b2ae 017bc6503f9670661277fe34471c20f7 {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.miRNA-Seq.S12_L001_R1.A C3N-05915 LSCC miRNA-Seq tissue_normal CPT0322070009 200325_UNC31-K00269_0272_AHHC2NBBXY_CCAACA_S12_L001_R1_001.unaln.bam 228888808 BAM S12_L001_R1 unaligned CPTAC3 b7510650-9f2b-4af7-9f1e-d8088e5d593d 72db9eff9eb18fa8fc6afc5988224574 {"aliquot_tag": "ALQ_3f0c11e8", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.miRNA-Seq.S24_L008_R1.T C3N-05915 LSCC miRNA-Seq tumor CPT0322060009 200224_UNC31-K00269_0267_AHC722BBXY_GGTAGC_S24_L008_R1_001.unaln.bam 179125540 BAM S24_L008_R1 unaligned CPTAC3 b2f36d14-f9c2-4410-b7d6-15ea391ba8e1 f05f4845dfa1d6c005534ce9a515007a {"aliquot_tag": "ALQ_26c3858", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05915.miRNA-Seq.T.hg38 C3N-05915 LSCC miRNA-Seq tumor CPT0322060009 9e4e0903-c9f8-4cde-af37-8db1b1be8582_mirnaseq_gdc_realn.bam 197900557 BAM harmonized CPTAC3 c64ae0a9-1bc5-4048-9947-81f73debe2bf 801ff1439af5f64bcc3bb818867f78db {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor"} -C3N-05915.RNA-Seq.chimeric.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.chimeric.gdc_realn.bam 119521512 BAM chimeric harmonized CPTAC3 fd2758d9-6dc6-4f9e-b7cb-066b6dcfde70 3ffa0c503e575f6f8a54c9e15225570f {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.RNA-Seq.chimeric.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.chimeric.gdc_realn.bam 34731555 BAM chimeric harmonized CPTAC3 e4e5e752-c1e0-4bbf-8abb-9a35ce6db365 ac1570509c143945a55ab00c63cf6f0b {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor"} -C3N-05915.RNA-Seq.genomic.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.genomic.gdc_realn.bam 9198530696 BAM genomic harmonized CPTAC3 fc8b791b-d63a-47bf-987c-98c45971f926 573a187742a71aa248b55059335935af {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.RNA-Seq.genomic.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.genomic.gdc_realn.bam 7907000354 BAM genomic harmonized CPTAC3 93c0703c-7486-47d4-8668-fa1df6319baf 2f8e8125f77771c4818b009841f8f7d3 {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor"} -C3N-05915.RNA-Seq.S20_L005_R1.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R1_001.fastq.gz 4785620358 FASTQ S20_L005_R1 unaligned CPTAC3 2eb48e82-c9fb-49f0-8b86-8bfc59f07970 7b2906ab1ffb41a17fce3448c8bb540e {"aliquot_tag": "ALQ_3f0c11e8", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.RNA-Seq.S20_L005_R2.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R2_001.fastq.gz 4970327192 FASTQ S20_L005_R2 unaligned CPTAC3 feb2ffa1-b685-4ffb-a7b7-871bc446a2bb 5cb9adee585c1e71c515c4aa62765d9f {"aliquot_tag": "ALQ_3f0c11e8", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.RNA-Seq.S8_L002_R1.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R1_001.fastq.gz 3825956607 FASTQ S8_L002_R1 unaligned CPTAC3 75bdae0c-f147-4087-8fed-495747727c5a be9b707db66e2c34acd26a0b94f61c27 {"aliquot_tag": "ALQ_26c3858", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05915.RNA-Seq.S8_L002_R2.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R2_001.fastq.gz 4176622628 FASTQ S8_L002_R2 unaligned CPTAC3 2275b000-ab63-41d0-9239-28c5b2296c46 36d5d92c9beef9dbba0720a2cef36cdf {"aliquot_tag": "ALQ_26c3858", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05915.RNA-Seq.transcriptome.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.transcriptome.gdc_realn.bam 12490361166 BAM transcriptome harmonized CPTAC3 cf7a4cbd-210f-4112-adae-9970e06c60ae 876d35e2df9a6b1ec40312d281aaafeb {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.RNA-Seq.transcriptome.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.transcriptome.gdc_realn.bam 10760464255 BAM transcriptome harmonized CPTAC3 65be7d6c-868b-4523-b3b2-dcf2dbf9c671 c366b4759dc48cf3f4961b9ad1f5dc87 {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor"} -C3N-05915.WGS.N C3N-05915 LSCC WGS blood_normal CPT0322100002 CPT0322100002.WholeGenome.RP-2158.bam 24168918360 BAM aligned CPTAC3 4d992dd8-4561-44c4-9c73-502480f9ddd4 8d11c040902754b63c412a5d2bfb646f {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-05915.WGS.N.hg38 C3N-05915 LSCC WGS blood_normal CPT0322100002 559686d4-6154-46cb-9117-0f8891718a04_wgs_gdc_realn.bam 70275815907 BAM harmonized CPTAC3 e12e825f-4ce5-4a46-8f95-1c68bc93eb39 10f36d55587937a2d9c1bf4f0f9903db {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-05915.WGS.T C3N-05915 LSCC WGS tumor CPT0322060006 CPT0322060006.WholeGenome.RP-2158.bam 25921492516 BAM aligned CPTAC3 31afeab1-a2f4-461a-9540-a0158665c47d 5d3fa4285d4b39b4b7929281d7a0290e {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor"} -C3N-05915.WGS.T.hg38 C3N-05915 LSCC WGS tumor CPT0322060006 3c742abb-e129-49e8-92cf-6af9ce1804eb_wgs_gdc_realn.bam 75696480525 BAM harmonized CPTAC3 d5ffc59c-b2ae-4689-b4d0-6547a2d77ae3 0863ea98449f65908552fdbe92674481 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor"} -C3N-05915.WXS.A C3N-05915 LSCC WXS tissue_normal CPT0322070006 CPT0322070006.WholeExome.RP-1303.bam 22575022794 BAM aligned CPTAC3 0f5b1cba-7268-4789-9272-ece1d44539ef 80aa79192e35476bd8069d4adc71421a {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.WXS.A.hg38 C3N-05915 LSCC WXS tissue_normal CPT0322070006 ffbc2bf8-fd2e-40e0-9c3b-b6e8903358f9_wxs_gdc_realn.bam 31312040802 BAM harmonized CPTAC3 d31c6fb2-1de2-4327-87f0-e03b6ab10690 35f8ee92f75736518d89a619b60182f7 {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05915.WXS.N C3N-05915 LSCC WXS blood_normal CPT0322100002 CPT0322100002.WholeExome.RP-1303.bam 23205120507 BAM aligned CPTAC3 72e67ef4-4a2c-4389-911b-cc63a5ad2767 26b2b6b85701e2a2b8343a1612003f5c {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-05915.WXS.N.hg38 C3N-05915 LSCC WXS blood_normal CPT0322100002 559686d4-6154-46cb-9117-0f8891718a04_wxs_gdc_realn.bam 31382017809 BAM harmonized CPTAC3 6a2f9466-fbdb-46f9-b42b-4df45a6af31f 5bb9548ddc4dfbb5bee4c9a2b0d5cd6e {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal"} -C3N-05915.WXS.T C3N-05915 LSCC WXS tumor CPT0322060006 CPT0322060006.WholeExome.RP-1303.bam 40773877575 BAM aligned CPTAC3 6efec94b-63d6-41f1-b6ed-227d61a4847e 801de8a7014d3dc15f0385e10f168d84 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor"} -C3N-05915.WXS.T.hg38 C3N-05915 LSCC WXS tumor CPT0322060006 3c742abb-e129-49e8-92cf-6af9ce1804eb_wxs_gdc_realn.bam 56671609756 BAM harmonized CPTAC3 ab428707-e067-4fd9-9212-ba45fb831ea0 db7b4a1d130e7053b6bd31586b226418 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor"} -C3N-05919.RNA-Seq.chimeric.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.chimeric.gdc_realn.bam 86175370 BAM chimeric harmonized CPTAC3 b4de08d8-514f-40fd-9f79-0f8930bca1ea 093b1ad4fc6c4500e351c1557bd06105 {"aliquot_tag": "ALQ_3655213d", "gdc_sample_type": "Primary Tumor"} -C3N-05919.RNA-Seq.genomic.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.genomic.gdc_realn.bam 6556954948 BAM genomic harmonized CPTAC3 d41715a4-7109-4d1a-99f6-896fa4f180a7 f706bbe8edf201c88357d375208855cf {"aliquot_tag": "ALQ_3655213d", "gdc_sample_type": "Primary Tumor"} -C3N-05919.RNA-Seq.S25_R1.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R1_001.fastq.gz 4290202054 FASTQ S25_R1 unaligned CPTAC3 4b77fd39-4481-4d90-9eb3-bfa97b3b8c8c 4ee1759a952c3f5877c46416aa0b1c1a {"aliquot_tag": "ALQ_3655213d", "sample": "S25", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05919.RNA-Seq.S25_R2.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R2_001.fastq.gz 4440463017 FASTQ S25_R2 unaligned CPTAC3 c6435c1d-d80e-45c6-aeac-0b56a4cbd776 ae102947aeca231522eb29252b19fcc4 {"aliquot_tag": "ALQ_3655213d", "sample": "S25", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05919.RNA-Seq.transcriptome.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.transcriptome.gdc_realn.bam 5951335402 BAM transcriptome harmonized CPTAC3 cf2e2a5e-330f-45fc-85d0-f8671a96afaf 09623ee186dffb5a3d1d62abbbfe8caa {"aliquot_tag": "ALQ_3655213d", "gdc_sample_type": "Primary Tumor"} -C3N-05923.MethArray.Green.A C3N-05923 LSCC Methylation_Array tissue_normal CPT0322390006 204367490084_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 956ee02e-a209-466f-b9dc-fba625fd1e5f 483fc33fc8ae0908c19b35f3ab72d006 {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.MethArray.Green.T C3N-05923 LSCC Methylation_Array tumor CPT0322380006 204367400148_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 de90dddf-3cec-4c35-a334-4fc28caba173 3d0d263cbd0abbd6fa80401085e7dc59 {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor"} -C3N-05923.MethArray.Red.A C3N-05923 LSCC Methylation_Array tissue_normal CPT0322390006 204367490084_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 c31849cd-29c0-4ff0-85fb-e351e35ef81e 151c751b0332006d6e1519482da577fa {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.MethArray.Red.T C3N-05923 LSCC Methylation_Array tumor CPT0322380006 204367400148_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 f4b892f3-cc6e-492d-b6b5-7441308e5562 f044ead12d78d2d20bdcff5f7f66273f {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor"} -C3N-05923.miRNA-Seq.A.hg38 C3N-05923 LSCC miRNA-Seq tissue_normal CPT0322390009 a9fbb10b-f3c0-4b09-a69f-b0d801a91b67_mirnaseq_gdc_realn.bam 347724053 BAM harmonized CPTAC3 bf3183e3-2933-4d85-a6dd-220e06371af4 02a3a6695886e0087e7b4c913e2cf787 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.miRNA-Seq.S13_L001_R1.A C3N-05923 LSCC miRNA-Seq tissue_normal CPT0322390009 200325_UNC31-K00269_0272_AHHC2NBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 313226873 BAM S13_L001_R1 unaligned CPTAC3 6b1e3b20-36a1-4122-89b7-d2ea311c7aeb 269a1dd375bfd593ad90f4d4c023c2e4 {"aliquot_tag": "ALQ_6a8dd27", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.miRNA-Seq.S25_L007_R1.T C3N-05923 LSCC miRNA-Seq tumor CPT0322380009 200224_UNC31-K00269_0267_AHC722BBXY_ACTGAT_S25_L007_R1_001.unaln.bam 224888474 BAM S25_L007_R1 unaligned CPTAC3 e17c359f-1ae2-4368-af53-bda0db877ae1 4e74529e85d26ea997bcbbe640a4fa04 {"aliquot_tag": "ALQ_3bc8f497", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05923.miRNA-Seq.T.hg38 C3N-05923 LSCC miRNA-Seq tumor CPT0322380009 dcb10878-d254-428e-8de9-ad94d6729a25_mirnaseq_gdc_realn.bam 246121106 BAM harmonized CPTAC3 ba455b79-338d-4da7-944d-81f1f6482a9e c43594c34e5780d2915e010f42d4117c {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor"} -C3N-05923.RNA-Seq.chimeric.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.chimeric.gdc_realn.bam 56468768 BAM chimeric harmonized CPTAC3 86958c49-4aca-47e1-83d8-5b5a00237a92 8a3e221097655ac0463ecf41468e6559 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.RNA-Seq.chimeric.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.chimeric.gdc_realn.bam 43187938 BAM chimeric harmonized CPTAC3 0cdcf0a8-b207-4f72-b78e-dc99e41ea2bf e595d40ab1a7ae5d9af239efad1582f5 {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor"} -C3N-05923.RNA-Seq.genomic.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.genomic.gdc_realn.bam 6632162384 BAM genomic harmonized CPTAC3 4530b0b4-e78e-4613-acf2-26303aee1ada 7809bf0553a145b36b27f17dc6654319 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.RNA-Seq.genomic.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.genomic.gdc_realn.bam 9024575022 BAM genomic harmonized CPTAC3 debafeb8-d9bb-4c8a-879e-05b58cf14f2c ecd7298540bbd90871083e80ba24e496 {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor"} -C3N-05923.RNA-Seq.S21_L006_R1.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3354127044 FASTQ S21_L006_R1 unaligned CPTAC3 ee71d79c-d2b9-465c-9991-f983ec6ddb35 356bf90bcb8667fc649d6e3ca034623e {"aliquot_tag": "ALQ_6a8dd27", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.RNA-Seq.S21_L006_R2.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3498431789 FASTQ S21_L006_R2 unaligned CPTAC3 cce57f46-dee9-4d01-a95b-c25c7a52247c 2cb1a56bf88b16e827b08035d3cbe35a {"aliquot_tag": "ALQ_6a8dd27", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.RNA-Seq.S9_L003_R1.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4494548642 FASTQ S9_L003_R1 unaligned CPTAC3 90004f61-49e4-496c-9a0b-f1bdf504c25f 30629344159280d005291b178b60764a {"aliquot_tag": "ALQ_3bc8f497", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05923.RNA-Seq.S9_L003_R2.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4862205138 FASTQ S9_L003_R2 unaligned CPTAC3 8ba0686a-4c85-4ffa-a7dc-113295780a61 67289665fe5f4553f0bc84e774d93b1d {"aliquot_tag": "ALQ_3bc8f497", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05923.RNA-Seq.transcriptome.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.transcriptome.gdc_realn.bam 9256406149 BAM transcriptome harmonized CPTAC3 7d7a9877-39e3-462e-abcd-35e208a51fca 54b0776505b3abcd7eab207a77bc6cd0 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.RNA-Seq.transcriptome.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.transcriptome.gdc_realn.bam 12663647383 BAM transcriptome harmonized CPTAC3 893ea809-8f61-4c7e-a1d9-94138f614d22 a7668273d8797db8ac2108cef18cd32b {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor"} -C3N-05923.WGS.N C3N-05923 LSCC WGS blood_normal CPT0322420002 CPT0322420002.WholeGenome.RP-2158.bam 22247182076 BAM aligned CPTAC3 7db87f17-02a0-420f-8c8e-f850d21b4ab2 8f67aad530decb3015ae9daef4626791 {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal"} -C3N-05923.WGS.N C3N-05923 LSCC WGS blood_normal CPT0322420002 CPT0322420002.WholeGenome.RP-2158.bam 22277769516 BAM aligned CPTAC3 892869e2-683c-4db0-aec6-f1a626258b3b 597f1ae298e61d6135c7735f990a1d54 {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal"} -C3N-05923.WGS.N.hg38 C3N-05923 LSCC WGS blood_normal CPT0322420002 e7d93998-6d00-4922-885b-9cbf6087243a_wgs_gdc_realn.bam 66415570499 BAM harmonized CPTAC3 97e58f07-e0c8-401b-8cc0-ca458145607e 63e724ca8dda564470aec53949c1c7ce {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal"} -C3N-05923.WGS.T C3N-05923 LSCC WGS tumor CPT0322380006 CPT0322380006.WholeGenome.RP-2158.bam 31438543683 BAM aligned CPTAC3 436fc85b-cc65-47cc-860b-7dc3a0b30d97 379f6da52e61085d21de7c0c2b44009c {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor"} -C3N-05923.WGS.T C3N-05923 LSCC WGS tumor CPT0322380006 CPT0322380006.WholeGenome.RP-2158.bam 31478177831 BAM aligned CPTAC3 7b9c1d26-7f40-4daa-a16d-ba86c8ddc10c e44fbe0f7c7cb88846cde2806171647d {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor"} -C3N-05923.WGS.T.hg38 C3N-05923 LSCC WGS tumor CPT0322380006 c318d792-3d62-40bb-87bd-a98703d4c4b2_wgs_gdc_realn.bam 98152965775 BAM harmonized CPTAC3 5c0f4d7b-2228-4bb3-b955-0a61ba2b0705 09e356642cf0f519a2e87d5206d5d590 {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor"} -C3N-05923.WXS.A C3N-05923 LSCC WXS tissue_normal CPT0322390006 CPT0322390006.WholeExome.RP-1303.bam 22412655181 BAM aligned CPTAC3 03639ae7-4960-496c-bdc5-aefbb94e0a05 09f4142d7e6e7a66a1d66c495f1139a0 {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.WXS.A.hg38 C3N-05923 LSCC WXS tissue_normal CPT0322390006 03994d86-20b1-4fd7-9082-9b739f74e4f7_wxs_gdc_realn.bam 30999962689 BAM harmonized CPTAC3 b2853c26-c742-41ac-a4e6-f4eadb4db96a 9002d6aea8b0ab8a4d19f362b633ac3f {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05923.WXS.N C3N-05923 LSCC WXS blood_normal CPT0322420002 CPT0322420002.WholeExome.RP-1303.bam 29291931878 BAM aligned CPTAC3 a2e7c19e-e6d8-40dd-bb98-106e9b85aa16 60436c47f1458dd06a590ee41ab06c9e {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal"} -C3N-05923.WXS.N.hg38 C3N-05923 LSCC WXS blood_normal CPT0322420002 e7d93998-6d00-4922-885b-9cbf6087243a_wxs_gdc_realn.bam 39821748678 BAM harmonized CPTAC3 7d06c854-91cd-4691-81d7-c1b570e135ca dece657f9514f3069580e574f689c658 {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal"} -C3N-05923.WXS.T C3N-05923 LSCC WXS tumor CPT0322380006 CPT0322380006.WholeExome.RP-1303.bam 20110787287 BAM aligned CPTAC3 0230fd2c-4308-45cd-afa8-fbde0e94805d ec99fec6cbee0a773ae3a53da78fd583 {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor"} -C3N-05923.WXS.T.hg38 C3N-05923 LSCC WXS tumor CPT0322380006 c318d792-3d62-40bb-87bd-a98703d4c4b2_wxs_gdc_realn.bam 27398526372 BAM harmonized CPTAC3 1ee8bd8a-e70b-4363-8b6d-69688e36c4f3 3df2f15d4f03226266e364eb109b360b {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor"} -C3N-05929.MethArray.Green.A C3N-05929 LSCC Methylation_Array tissue_normal CPT0322540006 204367470157_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dcd7d99b-d2a3-4a56-a45f-170d02d45006 714dc474affc37ff07a6bd55415ed9d5 {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.MethArray.Green.T C3N-05929 LSCC Methylation_Array tumor CPT0322530006 204372030161_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 bace93d1-a6f3-4f17-be8f-f3db5e994bfd 962e3f0d702b05f1180ea90769d519d1 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor"} -C3N-05929.MethArray.Red.A C3N-05929 LSCC Methylation_Array tissue_normal CPT0322540006 204367470157_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 5323923c-786e-4dea-be03-333bce28e69b 03ffdef1308e31a9744f00bf4df5abae {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.MethArray.Red.T C3N-05929 LSCC Methylation_Array tumor CPT0322530006 204372030161_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 78e2f9c6-7c9c-47d7-ae3f-89d100775d9d b69e44302fd0d3ba81fd286d4e874c71 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor"} -C3N-05929.miRNA-Seq.A.hg38 C3N-05929 LSCC miRNA-Seq tissue_normal CPT0322540009 0cc8fee9-3beb-49c3-bc66-9a1684575608_mirnaseq_gdc_realn.bam 280114513 BAM harmonized CPTAC3 863c69ce-0329-4b1b-92a3-cd5980b4a794 0f6fb699100c3608b9f196ae4bb3fc90 {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.miRNA-Seq.S14_L001_R1.A C3N-05929 LSCC miRNA-Seq tissue_normal CPT0322540009 200325_UNC31-K00269_0272_AHHC2NBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 255308167 BAM S14_L001_R1 unaligned CPTAC3 a294d284-e383-47fd-81ae-d5b4ee89dd49 b47f993f240325c6d78a035537e05f94 {"aliquot_tag": "ALQ_2861fa8b", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.miRNA-Seq.S26_L007_R1.T C3N-05929 LSCC miRNA-Seq tumor CPT0322530009 200224_UNC31-K00269_0267_AHC722BBXY_ATGAGC_S26_L007_R1_001.unaln.bam 193939181 BAM S26_L007_R1 unaligned CPTAC3 a54ddf21-1e74-46d0-b623-0442f8a0ec8e c26f3fdb12b7bf7cdb00e22f555290b9 {"aliquot_tag": "ALQ_9a41269b", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05929.miRNA-Seq.T.hg38 C3N-05929 LSCC miRNA-Seq tumor CPT0322530009 4670cbb0-ebc9-4f28-a779-68fdb88be0b8_mirnaseq_gdc_realn.bam 218315510 BAM harmonized CPTAC3 c86d52ea-94a8-41b1-96a0-54edd2804dc7 6a005a756dcf208c5b583103449a91d3 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor"} -C3N-05929.RNA-Seq.chimeric.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.chimeric.gdc_realn.bam 72864518 BAM chimeric harmonized CPTAC3 5ad43e57-dff4-4223-bb03-23a8250e8fbf c98343d5f977bb1de9411ea75fd2bfde {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.RNA-Seq.chimeric.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.chimeric.gdc_realn.bam 34475110 BAM chimeric harmonized CPTAC3 3768fa94-17c2-4bdd-b1b9-8ca818aa313d be662e0dc4143572b5c914bf15475189 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor"} -C3N-05929.RNA-Seq.genomic.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.genomic.gdc_realn.bam 9311387050 BAM genomic harmonized CPTAC3 7e659049-b57c-4afa-b2b0-5f4824bd2231 57b82b3e4ca32d8f7c13c16e2b6a2575 {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.RNA-Seq.genomic.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.genomic.gdc_realn.bam 7277075094 BAM genomic harmonized CPTAC3 937cf40f-56e0-424f-a413-05258a0623d4 aa7b2720dfd5db75bf77d653cea5a2f8 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor"} -C3N-05929.RNA-Seq.S10_L003_R1.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R1_001.fastq.gz 3571465475 FASTQ S10_L003_R1 unaligned CPTAC3 d22afb8c-5cf5-4e98-b58b-39798d2cbae3 11d4edad3bcee1bd7b2361240a66b8c9 {"aliquot_tag": "ALQ_9a41269b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05929.RNA-Seq.S10_L003_R2.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R2_001.fastq.gz 3893882529 FASTQ S10_L003_R2 unaligned CPTAC3 200ade6e-45a6-4b14-b570-23c1adc6d051 68ad2bb5603cbbb5a26f3ede5a45cbd1 {"aliquot_tag": "ALQ_9a41269b", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05929.RNA-Seq.S22_L006_R1.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R1_001.fastq.gz 4806108331 FASTQ S22_L006_R1 unaligned CPTAC3 9cbe6635-995a-411f-883c-d8bcfaed58d2 6cca2a8f4caebb22319876f09fa0bd44 {"aliquot_tag": "ALQ_2861fa8b", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.RNA-Seq.S22_L006_R2.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R2_001.fastq.gz 5032367135 FASTQ S22_L006_R2 unaligned CPTAC3 374007a8-1849-4b79-be60-5bd503d26be3 5faeb707c72344111832a35e080aa426 {"aliquot_tag": "ALQ_2861fa8b", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.RNA-Seq.transcriptome.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.transcriptome.gdc_realn.bam 13515620244 BAM transcriptome harmonized CPTAC3 26bc131a-3f56-4978-959a-9bd5a93d149b ad19a8e8612c723673d5e640c2093721 {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.RNA-Seq.transcriptome.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.transcriptome.gdc_realn.bam 9463435440 BAM transcriptome harmonized CPTAC3 a7038143-8667-466f-a668-ecec7c56fa26 4bcfe09462f5ca8020dd6bdf8131d003 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor"} -C3N-05929.WGS.N C3N-05929 LSCC WGS blood_normal CPT0322570002 CPT0322570002.WholeGenome.RP-2158.bam 22255632877 BAM aligned CPTAC3 4541b197-1013-4503-8f42-4a85fb176f20 e780fde0db80098dd0d8793ee4b8262b {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-05929.WGS.N C3N-05929 LSCC WGS blood_normal CPT0322570002 CPT0322570002.WholeGenome.RP-2158.bam 22283419425 BAM aligned CPTAC3 2c32ce90-3d11-4bce-9c54-6fee6f91d558 a8c1f85a57740a9d92bc8daaf40bf598 {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-05929.WGS.N.hg38 C3N-05929 LSCC WGS blood_normal CPT0322570002 e3bf416b-3d08-4d1b-bec4-808e55c7788c_wgs_gdc_realn.bam 67323248287 BAM harmonized CPTAC3 823dda5b-ff15-4a66-b28b-de0632850623 89a756316e1456f058be89545b988157 {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-05929.WGS.T C3N-05929 LSCC WGS tumor CPT0322530006 CPT0322530006.WholeGenome.RP-2158.bam 22994658353 BAM aligned CPTAC3 03dfac78-cdb2-46b9-b3f9-bc719f4edfcc 6bff1e024b00edbdc61e1be903c8dad7 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor"} -C3N-05929.WGS.T C3N-05929 LSCC WGS tumor CPT0322530006 CPT0322530006.WholeGenome.RP-2158.bam 23024296541 BAM aligned CPTAC3 3ed5082c-0263-406c-bd80-059ccc944cba ea03736afb2e21c4f49576e6e550cbc3 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor"} -C3N-05929.WGS.T.hg38 C3N-05929 LSCC WGS tumor CPT0322530006 23fa88f9-9293-406b-bc21-2928ff12bc8b_wgs_gdc_realn.bam 68602850602 BAM harmonized CPTAC3 c5d518a3-fc69-4d7b-a719-0aad38abe43a 0dd66d087db160ca4fa172cb3974fa79 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor"} -C3N-05929.WXS.A C3N-05929 LSCC WXS tissue_normal CPT0322540006 CPT0322540006.WholeExome.RP-1303.bam 24478120658 BAM aligned CPTAC3 3709af27-dfe1-4ac4-a53c-d7574b1dbada 209141ed01dcc472d50b1a40199980d6 {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.WXS.A.hg38 C3N-05929 LSCC WXS tissue_normal CPT0322540006 86570644-b317-485c-bda9-6f773798a922_wxs_gdc_realn.bam 33407980667 BAM harmonized CPTAC3 93ab8025-d709-42d3-b04d-808d95806cb7 57ca6d02a628cd77968b5d7e9d01ee3e {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal"} -C3N-05929.WXS.N C3N-05929 LSCC WXS blood_normal CPT0322570002 CPT0322570002.WholeExome.RP-1303.bam 21754055864 BAM aligned CPTAC3 4ae105f1-5a5b-4893-bbdc-598f241495b1 701c6f1a37b11ebd618e1f935ecd8a7e {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-05929.WXS.N.hg38 C3N-05929 LSCC WXS blood_normal CPT0322570002 e3bf416b-3d08-4d1b-bec4-808e55c7788c_wxs_gdc_realn.bam 29330029854 BAM harmonized CPTAC3 df539074-52ef-4708-8e48-fef807654ea1 cf6102d7bb3013e59f8158bed10d1847 {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal"} -C3N-05929.WXS.T C3N-05929 LSCC WXS tumor CPT0322530006 CPT0322530006.WholeExome.RP-1303.bam 23508324471 BAM aligned CPTAC3 14a99afc-f095-46d1-9d1b-b1af3451575c c902f4e82f4031a8e4f0ef90971e7610 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor"} -C3N-05929.WXS.T.hg38 C3N-05929 LSCC WXS tumor CPT0322530006 23fa88f9-9293-406b-bc21-2928ff12bc8b_wxs_gdc_realn.bam 32069115005 BAM harmonized CPTAC3 7f31c9ed-2dd8-4bb3-a9bc-e3872219f915 88398555bd2d8e927ea2c6aa2484f2ae {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor"} -C3N-05991.MethArray.Green.T C3N-05991 GBM Methylation_Array tumor CPT0378550006 205555390157_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e1bd1e3c-68ca-4e80-a830-56bced50c141 311b8d158c6182081434d63131d7a0f2 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor"} -C3N-05991.MethArray.Red.T C3N-05991 GBM Methylation_Array tumor CPT0378550006 205555390157_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 32afbfd3-a0a5-4a19-8323-a110da686f9e ae187eb0e08c2e84707259fad3c03129 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor"} -C3N-05991.miRNA-Seq.S33_L007_R1.T C3N-05991 GBM miRNA-Seq tumor CPT0378550009 201209_UNC32-K00270_0265_AHJ55WBBXY_GTAGAG_S33_L007_R1_001.unaln.bam 330675528 BAM S33_L007_R1 unaligned CPTAC3 2063c44a-250e-4eb9-86ec-0fb033ec0fc3 8b4351e5a1b9d02a3fd68719d50b104e {"aliquot_tag": "ALQ_f9918211", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05991.miRNA-Seq.T.hg38 C3N-05991 GBM miRNA-Seq tumor CPT0378550009 abd9c74f-2f86-4d33-a671-88896aec0509_mirnaseq_gdc_realn.bam 377206395 BAM harmonized CPTAC3 d802bdcc-83a8-4d67-a3b5-51d07dae66c1 bcda18ea5b1b731f3bbc42149e7a1ebf {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor"} -C3N-05991.RNA-Seq.chimeric.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.chimeric.gdc_realn.bam 357388540 BAM chimeric harmonized CPTAC3 fd79f425-5690-4046-8e42-967c58119955 ead5b9312579cc65d0e98a34c52d3cf7 {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor"} -C3N-05991.RNA-Seq.genomic.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.genomic.gdc_realn.bam 7699962451 BAM genomic harmonized CPTAC3 5584991c-ac0e-4df5-add0-4f2303223862 27c4973201f1d1b05881a0165310bf25 {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor"} -C3N-05991.RNA-Seq.S24_L006_R1.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ S24_L006_R1 unaligned CPTAC3 f3fdfc5e-7311-4d86-ac76-83d954c22674 1d0265548cd94912e5ec5ba36bd713f6 {"aliquot_tag": "ALQ_f9918211", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C3N-05991.RNA-Seq.S24_L006_R2.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ S24_L006_R2 unaligned CPTAC3 8f4a08f1-2571-471f-9eac-c774275f33f4 fc645b0cbf17515a41a187a5ecb9018c {"aliquot_tag": "ALQ_f9918211", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C3N-05991.RNA-Seq.transcriptome.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.transcriptome.gdc_realn.bam 7843415219 BAM transcriptome harmonized CPTAC3 63be8b58-ce8a-4abf-b8b0-f010e1268ee1 effbd4a0fe748b03a1672c9dda690524 {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor"} -C3N-05991.WGS.N C3N-05991 GBM WGS blood_normal CPT0378610002 CPT0378610002.WholeGenome.RP-2158.bam 23981701662 BAM aligned CPTAC3 f5795e82-aba0-48f6-8047-c5c550426671 300e104dd130cac4fa652133a388e26b {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal"} -C3N-05991.WGS.N.hg38 C3N-05991 GBM WGS blood_normal CPT0378610002 099752ff-7fa5-4eb0-831a-09e5a211d5c3_wgs_gdc_realn.bam 71819625554 BAM harmonized CPTAC3 39243f84-1aee-49d4-8a00-32c396a850f3 c0b6bcaf135ae44980f7501e4341fa0c {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal"} -C3N-05991.WGS.T C3N-05991 GBM WGS tumor CPT0378550006 CPT0378550006.WholeGenome.RP-2158.bam 29842642374 BAM aligned CPTAC3 28a48366-c183-4b4b-ab8b-bdb8b3cc5b82 5c107443e870154fe136067aeb95f675 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor"} -C3N-05991.WGS.T.hg38 C3N-05991 GBM WGS tumor CPT0378550006 0ca72fda-2cdf-415a-b5a4-53470bf3af60_wgs_gdc_realn.bam 93840833290 BAM harmonized CPTAC3 050d8938-f282-41da-94a0-94fefe053d4e 4e782040321db5c4fb97cade03f42653 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor"} -C3N-05991.WXS.N C3N-05991 GBM WXS blood_normal CPT0378610002 CPT0378610002.WholeExome.RP-1303.bam 31487695247 BAM aligned CPTAC3 182ccfb9-6805-4994-ad0f-98fc9a780909 64f110db084d288037d5be7e0145804e {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal"} -C3N-05991.WXS.N.hg38 C3N-05991 GBM WXS blood_normal CPT0378610002 099752ff-7fa5-4eb0-831a-09e5a211d5c3_wxs_gdc_realn.bam 43082793097 BAM harmonized CPTAC3 0650ae98-e90e-4ce8-a835-703349dc966e 0c7196c7b6a771a012f6ec78d6dda36d {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal"} -C3N-05991.WXS.T C3N-05991 GBM WXS tumor CPT0378550006 CPT0378550006.WholeExome.RP-1303.bam 20864411998 BAM aligned CPTAC3 c7d2d028-afc9-491c-b8bc-5e4d86ec2394 46384f411226104fc08e84962f85a622 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor"} -C3N-05991.WXS.T.hg38 C3N-05991 GBM WXS tumor CPT0378550006 0ca72fda-2cdf-415a-b5a4-53470bf3af60_wxs_gdc_realn.bam 28678600810 BAM harmonized CPTAC3 7c48aae6-c19b-46e4-a8aa-205117088f07 8cdaac08309aab7889b8881c169b834d {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor"} -C464694.DUP_7319b796.MethArray.Green.T C464694 GBM Methylation_Array tumor 7316UP-1220 205854140144_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 212c2e15-a962-429c-bd1f-9f5f1177282d 50b3c3adde4024bdf3b8376f048cfcaf {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C464694.DUP_7319b796.MethArray.Red.T C464694 GBM Methylation_Array tumor 7316UP-1220 205854140144_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 4321c33c-0477-4178-8f26-4035aa8920e3 53a5efeb91fec196485c5d818b20cdf7 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C464694.DUP_7319b796.WGS.T C464694 GBM WGS tumor 7316UP-1220 7316UP-1220.WholeGenome.RP-2158.bam 50906731344 BAM aligned CPTAC3 2cfe9f7d-a40a-4b0d-92de-8dd2e369dfe9 5839ad43a00ff69295864978d1bfba47 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C464694.DUP_7319b796.WGS.T.hg38 C464694 GBM WGS tumor 7316UP-1220 737a37b7-31a5-4187-a4fa-5e7171bb6569_wgs_gdc_realn.bam 150532430539 BAM harmonized CPTAC3 77c6fb07-df6b-4048-a13a-4dd4df35c0e2 bc8ca27c36b93e32f2b52d9175adfd56 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C464694.DUP_7319b796.WXS.T C464694 GBM WXS tumor 7316UP-1220 7316UP-1220.WholeExome.RP-1303.bam 22942475909 BAM aligned CPTAC3 1b1eb9c9-e46d-4867-8ca9-7b90245fb6ac 023d4b7af206ae23cf22b1cef24f44e6 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C464694.DUP_7319b796.WXS.T.hg38 C464694 GBM WXS tumor 7316UP-1220 737a37b7-31a5-4187-a4fa-5e7171bb6569_wxs_gdc_realn.bam 31018496566 BAM harmonized CPTAC3 00eb9000-e8b4-4b57-8f08-45b92aaba916 b5f769d8312eda67025f8c777f7dab7b {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C464694.MethArray.Green.R C464694 GBM Methylation_Array recurrent_tumor 7316UP-2165 205854140148_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1d5b76d6-61d0-4d7e-b5f3-f9d1f6032a9b 26d0cb9fa695b6c5c1bee1d6fe1404af {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor"} -C464694.MethArray.Red.R C464694 GBM Methylation_Array recurrent_tumor 7316UP-2165 205854140148_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 ce4c594a-0bee-4a5f-b1be-4a8e5ee49bdb 88c6ccf21a239c159ac3a398483b3227 {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor"} -C464694.miRNA-Seq.S19_L003_R1.T C464694 GBM miRNA-Seq tumor 7316UP-1220-1104806 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 369818581 BAM S19_L003_R1 unaligned CPTAC3 c199d8d6-379a-4af8-a9d4-ed6e4b614fb0 ea112e1b36fed716827ebd89f58efe16 {"aliquot_tag": "ALQ_b4191726", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C464694.miRNA-Seq.T.hg38 C464694 GBM miRNA-Seq tumor 7316UP-1220-1104806 207cc3a9-ce33-45cd-ae40-b736dfee9de2_mirnaseq_gdc_realn.bam 450526376 BAM harmonized CPTAC3 497bbdbd-6e1b-40a6-b101-541d27a5a22c 61480a9842dbf1edc62578fb947ad66e {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor"} -C464694.RNA-Seq.chimeric.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.chimeric.gdc_realn.bam 87309393 BAM chimeric harmonized CPTAC3 e7928408-7006-428e-9833-d169af22ef92 718ce263befc7d86f9f63d16bf528d81 {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor"} -C464694.RNA-Seq.genomic.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.genomic.gdc_realn.bam 9062562582 BAM genomic harmonized CPTAC3 cd31d639-0b9c-406d-9849-bfef9baefc0a 195eedd31a17bed3a37067d36e755505 {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor"} -C464694.RNA-Seq.S17_L005_R1.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ S17_L005_R1 unaligned CPTAC3 e953a951-3a91-442e-ad44-8ebde2357ba1 5233571714b1ad08855987a0e21637bf {"aliquot_tag": "ALQ_b4191726", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C464694.RNA-Seq.S17_L005_R2.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R2_001.fastq.gz 4535404399 FASTQ S17_L005_R2 unaligned CPTAC3 dfd4d083-3696-4f1a-9a7b-9613cb26d82d 40639d47dfecbf5ca2bf8b47b9bb8e1a {"aliquot_tag": "ALQ_b4191726", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C464694.RNA-Seq.transcriptome.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.transcriptome.gdc_realn.bam 13857049571 BAM transcriptome harmonized CPTAC3 d7f8e5ba-68aa-421c-9c66-850b4d543f88 5e3e0cf4a2edf4bf941561b037f973cc {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor"} -C464694.WGS.N C464694 GBM WGS blood_normal 7316UP-1220-1105273 7316UP-1220-1105273.WholeGenome.RP-2158.bam 58056642254 BAM aligned CPTAC3 8de7ce32-b53a-4bd8-83f9-e8584ffa7bd4 5c2d8a5c6b7e42314c9f21c2f30ebe68 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal"} -C464694.WGS.N.hg38 C464694 GBM WGS blood_normal 7316UP-1220-1105273 79ab7960-710a-4fb4-b7fb-d8d374ac0273_wgs_gdc_realn.bam 171009546064 BAM harmonized CPTAC3 bd0412f4-6d85-4fde-a8da-4da9f281836f 70005d6b3f73fc939c811e7938fc4e91 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal"} -C464694.WGS.R C464694 GBM WGS recurrent_tumor 7316UP-2165 7316UP-2165.WholeGenome.RP-2158.bam 59730720406 BAM aligned CPTAC3 49907439-eaca-4bc0-bb26-e5cf4ef4b055 824010f782891f63355558dcd5d5afe4 {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor"} -C464694.WGS.R.hg38 C464694 GBM WGS recurrent_tumor 7316UP-2165 21f8608a-3452-4c72-be68-f12c4c3ec33a_wgs_gdc_realn.bam 180690918935 BAM harmonized CPTAC3 1de50e6a-57e7-497f-a6fb-33d85aeda79a 138f245ecf718706592d724eb90b87ad {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor"} -C464694.WXS.N C464694 GBM WXS blood_normal 7316UP-1220-1105273 7316UP-1220-1105273.WholeExome.RP-1303.bam 34171762075 BAM aligned CPTAC3 ae674995-a428-4617-a594-a46bd0a14690 d4813def900172a4870d1e6c6d0701c9 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal"} -C464694.WXS.N.hg38 C464694 GBM WXS blood_normal 7316UP-1220-1105273 79ab7960-710a-4fb4-b7fb-d8d374ac0273_wxs_gdc_realn.bam 46629574666 BAM harmonized CPTAC3 51e69507-c1db-4630-bbd3-dfb6e176132b ed215e962448dd6047279570cd656868 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal"} -C464694.WXS.R C464694 GBM WXS recurrent_tumor 7316UP-2165 7316UP-2165.WholeExome.RP-1303.bam 21435410858 BAM aligned CPTAC3 e065a5af-faad-4155-aebc-d191be6cc1fa 3e72c6c922523d3be5cb85fd89bcc47e {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor"} -C464694.WXS.R.hg38 C464694 GBM WXS recurrent_tumor 7316UP-2165 21f8608a-3452-4c72-be68-f12c4c3ec33a_wxs_gdc_realn.bam 29259564952 BAM harmonized CPTAC3 14392cb7-f165-4b08-8caf-bfd9a7875b72 16f16685f362bb5aa9303c0cdafe727d {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor"} -C464694.WXS.T C464694 GBM WXS tumor 7316UP-1220-1105271 7316UP-1220-1105271.WholeExome.RP-1303.bam 23752991278 BAM aligned CPTAC3 680f0ed2-f4b3-4831-afb6-1758fa985db4 188d88b682c63fd90a1737d0a62f4710 {"aliquot_tag": "ALQ_d017f6f1", "gdc_sample_type": "Primary Tumor"} -C464694.WXS.T.hg38 C464694 GBM WXS tumor 7316UP-1220-1105271 31b51dd4-c4fe-4d97-ae09-698217519667_wxs_gdc_realn.bam 32446858344 BAM harmonized CPTAC3 44dd95c6-0058-43cc-8f40-781d00ea6f46 1daeb9e1a5ca1de2c08b2905e5489b11 {"aliquot_tag": "ALQ_d017f6f1", "gdc_sample_type": "Primary Tumor"} -C524103.DUP_aee3de0f.MethArray.Green.T C524103 GBM Methylation_Array tumor 7316UP-1302 205705520032_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3304fdae-a424-42d5-b3a5-334d3f317c40 98f2561f12646c2454d007919c8b6410 {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C524103.DUP_aee3de0f.MethArray.Red.T C524103 GBM Methylation_Array tumor 7316UP-1302 205705520032_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 53deb417-0eb3-46a7-a244-8f0be240118c 309ebf6b6e6a476d7ecf43744a1a5ace {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C524103.DUP_aee3de0f.WGS.T C524103 GBM WGS tumor 7316UP-1302 7316UP-1302.WholeGenome.RP-2158.bam 55198852451 BAM aligned CPTAC3 fd71f293-e7f0-4982-abd7-1a510b432306 040393ee5d9d38028577bacd01834b1f {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C524103.DUP_aee3de0f.WGS.T.hg38 C524103 GBM WGS tumor 7316UP-1302 4c95a675-d17a-40a7-b77f-a2389895f7fe_wgs_gdc_realn.bam 171540870167 BAM harmonized CPTAC3 a6ec178b-fa93-4486-9b6f-3d1f0392fa4e d25074048cea82003311bbdf8de284bf {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C524103.DUP_aee3de0f.WXS.T C524103 GBM WXS tumor 7316UP-1302 7316UP-1302.WholeExome.RP-1303.bam 26476635087 BAM aligned CPTAC3 b9850345-daa3-4b02-af56-35927a4b6bab 4be8f0c6f0f30dba18708c1659351f58 {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C524103.DUP_aee3de0f.WXS.T.hg38 C524103 GBM WXS tumor 7316UP-1302 4c95a675-d17a-40a7-b77f-a2389895f7fe_wxs_gdc_realn.bam 35777446418 BAM harmonized CPTAC3 35d02b21-b274-4b7c-ac81-9f4a5dd1176d 8ba56fb7f694a2c4c8571ccb88d9f37a {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C524103.DUP_d3942a4a.MethArray.Green.R C524103 GBM Methylation_Array recurrent_tumor 7316UP-1352 205555380005_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 56256210-86b4-458e-b7b2-b827e6be87d4 3e939bf3a12cd6f231f3c0cc6b3d5d48 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C524103.DUP_d3942a4a.MethArray.Red.R C524103 GBM Methylation_Array recurrent_tumor 7316UP-1352 205555380005_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a819416b-204f-4b9f-ab2a-1f5cc4a5f5f5 d566d25faf9aaa6b4fab62f83556690a {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C524103.DUP_d3942a4a.WGS.R C524103 GBM WGS recurrent_tumor 7316UP-1352 7316UP-1352.WholeGenome.RP-2158.bam 59412790773 BAM aligned CPTAC3 2806f70f-3e38-44d6-9b0a-fde23338695e e7cfeb715ac64f4da7a9af13eef31124 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C524103.DUP_d3942a4a.WGS.R.hg38 C524103 GBM WGS recurrent_tumor 7316UP-1352 262ba396-1da5-4506-87a1-7f1c057067fd_wgs_gdc_realn.bam 175620533085 BAM harmonized CPTAC3 aeca55f7-fffe-481c-aec4-b35c0c520f17 90718821e3665c31c5c8270c419562d8 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C524103.DUP_d3942a4a.WXS.R C524103 GBM WXS recurrent_tumor 7316UP-1352 7316UP-1352.WholeExome.RP-1303.bam 31780811964 BAM aligned CPTAC3 8cf5d4a7-4910-4ebf-867d-53de994c51e9 4dcf76068de8dc456650925b21daa7c6 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C524103.DUP_d3942a4a.WXS.R.hg38 C524103 GBM WXS recurrent_tumor 7316UP-1352 262ba396-1da5-4506-87a1-7f1c057067fd_wxs_gdc_realn.bam 43148865520 BAM harmonized CPTAC3 90cbaa83-0603-40d1-82ad-5e0fe0328c15 3f57e83f5728156ddd6131ed7e4db023 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C524103.miRNA-Seq.R.hg38 C524103 GBM miRNA-Seq recurrent_tumor 7316UP-1352-1104794 2998ae4a-6249-4433-9396-64b6397ebc6f_mirnaseq_gdc_realn.bam 247802653 BAM harmonized CPTAC3 1b94a53a-0ef3-4a71-afa5-d2f214097cdc dbe1d8db3b86d44b5d0e460b8848830b {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor"} -C524103.miRNA-Seq.S26_L002_R1.R C524103 GBM miRNA-Seq recurrent_tumor 7316UP-1352-1104794 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGATC_S26_L002_R1_001.unaln.bam 208885492 BAM S26_L002_R1 unaligned CPTAC3 9c405e8f-aa7c-485a-8e25-06319707110f 1e0bb4246702c71b19016c72d50ff083 {"aliquot_tag": "ALQ_8d2d6641", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C524103.miRNA-Seq.S47_L003_R1.T C524103 GBM miRNA-Seq tumor 7316UP-1302-1104811 210817_UNC31-K00269_0302_AHLCTHBBXY_GGTAGC_S47_L003_R1_001.unaln.bam 327472214 BAM S47_L003_R1 unaligned CPTAC3 5d1e8951-7217-4a8c-8496-0c768deb3a80 14a020f5a81d7f56d1ea795881eac01d {"aliquot_tag": "ALQ_d8eb94bf", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C524103.miRNA-Seq.T.hg38 C524103 GBM miRNA-Seq tumor 7316UP-1302-1104811 d8eec5bf-4983-4450-ade1-13008e3fab41_mirnaseq_gdc_realn.bam 364888323 BAM harmonized CPTAC3 5733b734-1d9e-4f9d-960e-fc0bb59e3f24 db5f162c7682f5a306426f0469263908 {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor"} -C524103.RNA-Seq.chimeric.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.chimeric.gdc_realn.bam 29885194 BAM chimeric harmonized CPTAC3 8608c7fd-502d-487c-aff5-c3a208f761fe 6c3370dd204fede6e8bd5df63680ec9b {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor"} -C524103.RNA-Seq.chimeric.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.chimeric.gdc_realn.bam 23427159 BAM chimeric harmonized CPTAC3 eafef641-2356-4ff5-a189-76d635dd90c9 fde72fcc9525162e915efde7542aafac {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor"} -C524103.RNA-Seq.genomic.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.genomic.gdc_realn.bam 6665188457 BAM genomic harmonized CPTAC3 86de2fe4-4f4c-473a-9b3c-3ad8304105a2 54745cb7cc2aa266f0900a81d7836cec {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor"} -C524103.RNA-Seq.genomic.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.genomic.gdc_realn.bam 9347625606 BAM genomic harmonized CPTAC3 b563f90b-b773-4b13-b4cf-a219780019ac 99451fbaf0bfa429dab40d1dc67694d0 {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor"} -C524103.RNA-Seq.S18_L005_R1.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R1_001.fastq.gz 2870086974 FASTQ S18_L005_R1 unaligned CPTAC3 22a329b1-e16e-4f74-9776-f89111085a6e 75b51918415f8d52a6669e2a84032240 {"aliquot_tag": "ALQ_8d2d6641", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C524103.RNA-Seq.S18_L005_R2.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R2_001.fastq.gz 3112261192 FASTQ S18_L005_R2 unaligned CPTAC3 1c2a8eae-a280-4bda-8053-bd1f73695d64 e28ce306b4b78cb6397887d886fce547 {"aliquot_tag": "ALQ_8d2d6641", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C524103.RNA-Seq.S23_L006_R1.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R1_001.fastq.gz 3191813062 FASTQ S23_L006_R1 unaligned CPTAC3 afe00443-10de-4f18-b3cc-feda64a0ed5b 72421a542953b915705122033d30641b {"aliquot_tag": "ALQ_d8eb94bf", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C524103.RNA-Seq.S23_L006_R2.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R2_001.fastq.gz 3472543146 FASTQ S23_L006_R2 unaligned CPTAC3 bbbc3545-1937-4afe-9d74-28e653c9f64d c76216a3140723e8a1bc386bfda0c766 {"aliquot_tag": "ALQ_d8eb94bf", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C524103.RNA-Seq.transcriptome.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.transcriptome.gdc_realn.bam 14190096130 BAM transcriptome harmonized CPTAC3 11c689c7-8067-4932-80bc-954d9e41d076 7c6350a67434da864e9e972fc3acc3f5 {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor"} -C524103.RNA-Seq.transcriptome.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.transcriptome.gdc_realn.bam 13208122277 BAM transcriptome harmonized CPTAC3 c0490bff-0058-40ff-8392-4e820eff1acd 90259b5a439958c02641dc1f4082209a {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor"} -C524103.WGS.N C524103 GBM WGS blood_normal 7316UP-1302-1105274 7316UP-1302-1105274.WholeGenome.RP-2158.bam 48734475668 BAM aligned CPTAC3 19ffaaad-e881-46e2-9a11-aecc70e586e9 26e89fab98de5e8d3edf3405a9444fef {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal"} -C524103.WGS.N.hg38 C524103 GBM WGS blood_normal 7316UP-1302-1105274 38c9ec6a-22fe-4fc1-a8b7-1f34921007e1_wgs_gdc_realn.bam 145571506954 BAM harmonized CPTAC3 9e1d34a0-bb29-454f-846b-28c073c1adcf edfaa4cbf7deaacf4cbed9e8dbdd647f {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal"} -C524103.WGS.R C524103 GBM WGS recurrent_tumor 7316UP-1352-1105258 7316UP-1352-1105258.WholeGenome.RP-2158.bam 42916365920 BAM aligned CPTAC3 d25caa5c-4a24-45b8-8a75-10961ce9a232 4eb9b6ec7ff3656a7aed711fe6811069 {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor"} -C524103.WGS.R.hg38 C524103 GBM WGS recurrent_tumor 7316UP-1352-1105258 10c4c618-6b30-457c-8637-f9d771de41a6_wgs_gdc_realn.bam 128584101381 BAM harmonized CPTAC3 da74e522-7f6e-4a08-9e1d-30fb7c10dae8 2a11d7917486075522f3843b056ed56c {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor"} -C524103.WXS.N C524103 GBM WXS blood_normal 7316UP-1302-1105274 7316UP-1302-1105274.WholeExome.RP-1303.bam 27656891961 BAM aligned CPTAC3 6eaa6ac2-44b3-4444-8c0d-a25e08e96978 d10ea801452598fef6324db044192b52 {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal"} -C524103.WXS.N.hg38 C524103 GBM WXS blood_normal 7316UP-1302-1105274 38c9ec6a-22fe-4fc1-a8b7-1f34921007e1_wxs_gdc_realn.bam 37550402224 BAM harmonized CPTAC3 bb991570-6c92-416b-a859-6ead7c509eb3 2df2ddc06d31500b958c921489aea6ce {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal"} -C524103.WXS.R C524103 GBM WXS recurrent_tumor 7316UP-1352-1105258 7316UP-1352-1105258.WholeExome.RP-1303.bam 28254822885 BAM aligned CPTAC3 a987daf4-a1a0-4054-a9f2-53ef20187d07 9108f5e635dc411d943db3d5326f3667 {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor"} -C524103.WXS.R.hg38 C524103 GBM WXS recurrent_tumor 7316UP-1352-1105258 10c4c618-6b30-457c-8637-f9d771de41a6_wxs_gdc_realn.bam 38174594649 BAM harmonized CPTAC3 8c893ed0-d3bf-4019-8b73-afc8a5ab818f 895dc6884b5f3b7672dc37f3a9629757 {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor"} -C524103.WXS.T C524103 GBM WXS tumor 7316UP-1302-1105204 7316UP-1302-1105204.WholeExome.RP-1303.bam 24692723272 BAM aligned CPTAC3 cd8edce2-d841-4514-8c43-806379e3926f 150ea7817acf2a33804500465fc789aa {"aliquot_tag": "ALQ_4b1b3c2", "gdc_sample_type": "Primary Tumor"} -C524103.WXS.T.hg38 C524103 GBM WXS tumor 7316UP-1302-1105204 ffd6163a-085f-4213-89e4-5bbc68bca404_wxs_gdc_realn.bam 33667946602 BAM harmonized CPTAC3 2b0b81ce-7556-4be8-bf5f-6f359239cc39 cdbcfd33ec885b6a35e8b42d775c8b9a {"aliquot_tag": "ALQ_4b1b3c2", "gdc_sample_type": "Primary Tumor"} -C621273.DUP_58508890.MethArray.Green.R C621273 GBM Methylation_Array recurrent_tumor 7316UP-1614 205854150039_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d8cfbfe2-4d7c-44f0-9511-db0c4f24acbf d48c9598695f205531feb9e92ff05102 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C621273.DUP_58508890.MethArray.Red.R C621273 GBM Methylation_Array recurrent_tumor 7316UP-1614 205854150039_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a045d8ec-2939-4ab0-9efa-cf0136842163 f0b0c6cdca68232696d668581e0519cf {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C621273.DUP_58508890.WGS.R C621273 GBM WGS recurrent_tumor 7316UP-1614 7316UP-1614.WholeGenome.RP-2158.bam 49320276389 BAM aligned CPTAC3 8b170826-9dea-4e38-89df-f3e04a145981 a267e6fe122f985c0e268f6907294475 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C621273.DUP_58508890.WGS.R.hg38 C621273 GBM WGS recurrent_tumor 7316UP-1614 e9d2de13-33cd-4d7a-b218-763b81e81f25_wgs_gdc_realn.bam 143277667858 BAM harmonized CPTAC3 ec5d09c4-8da5-4e53-b3d9-5f2448acdff5 7085e87fbb69f5f127d646ff6f8129b7 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C621273.DUP_58508890.WXS.R C621273 GBM WXS recurrent_tumor 7316UP-1614 7316UP-1614.WholeExome.RP-1303.bam 22247999080 BAM aligned CPTAC3 5743f054-3db2-40c1-8933-1e6cf7f0f395 f6715fec951aacd2d79117970bd01189 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C621273.DUP_58508890.WXS.R.hg38 C621273 GBM WXS recurrent_tumor 7316UP-1614 e9d2de13-33cd-4d7a-b218-763b81e81f25_wxs_gdc_realn.bam 30296335794 BAM harmonized CPTAC3 8de145d0-7789-4cbe-bbc3-3c00a03d9daf 078a75a6e5baa58b3efe405f25ab972d {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C621273.miRNA-Seq.R.hg38 C621273 GBM miRNA-Seq recurrent_tumor 7316UP-1614-1104792 a10e0ee5-451e-4614-a438-6719a57b9dbf_mirnaseq_gdc_realn.bam 299013874 BAM harmonized CPTAC3 b3bd0565-6ef0-4f02-8e32-5b9e2241fe6e 52ebbc3a76573a7cfa65da88924740c7 {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor"} -C621273.miRNA-Seq.S22_L002_R1.R C621273 GBM miRNA-Seq recurrent_tumor 7316UP-1614-1104792 210817_UNC31-K00269_0302_AHLCTHBBXY_ACAGTG_S22_L002_R1_001.unaln.bam 252996380 BAM S22_L002_R1 unaligned CPTAC3 f854017d-3c0d-4e9e-9095-1cd25132dc95 ca4397fd5e5e20411f44fd0006020d2e {"aliquot_tag": "ALQ_6fe8b6c6", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C621273.RNA-Seq.chimeric.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.chimeric.gdc_realn.bam 56654506 BAM chimeric harmonized CPTAC3 b19f9043-8552-4f42-9290-a04f22d0242a 6e11c9fa1af40c8d15d1bc59a8746f4c {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor"} -C621273.RNA-Seq.genomic.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.genomic.gdc_realn.bam 7690057852 BAM genomic harmonized CPTAC3 5e634914-b72e-4e9c-ad83-1f7894b8bfa4 54a5a0a8cd018298f45a01549146463e {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor"} -C621273.RNA-Seq.S20_L005_R1.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R1_001.fastq.gz 3601840825 FASTQ S20_L005_R1 unaligned CPTAC3 d2076f19-ae18-4b0f-90c0-009d307bac68 808a29599743ca7aa0440a43576f0c72 {"aliquot_tag": "ALQ_6fe8b6c6", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C621273.RNA-Seq.S20_L005_R2.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R2_001.fastq.gz 3751660538 FASTQ S20_L005_R2 unaligned CPTAC3 208f978b-38ac-480f-ba8b-10672e7acf9d 5aaf59378fb20e4f5aaec8332e344222 {"aliquot_tag": "ALQ_6fe8b6c6", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C621273.RNA-Seq.transcriptome.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.transcriptome.gdc_realn.bam 16518723618 BAM transcriptome harmonized CPTAC3 02c38852-7cca-4f7e-acb9-22680509bc3f 0604d55eee6716b4cad532b366c437f1 {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor"} -C621273.WGS.N C621273 GBM WGS blood_normal 7316UP-1614-1105218 7316UP-1614-1105218.WholeGenome.RP-2158.bam 45901157027 BAM aligned CPTAC3 b9e0471e-bc5a-4f34-97ff-974f2200a169 d5cc3843ccc56f0d3f496611d8315419 {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal"} -C621273.WGS.N.hg38 C621273 GBM WGS blood_normal 7316UP-1614-1105218 75a887df-8b85-437d-9a2f-de23f833d084_wgs_gdc_realn.bam 132767966103 BAM harmonized CPTAC3 206b98ac-4f65-4b9e-9466-df037d335fda 1fee0ccd1a5d5f758760d9b1191f9743 {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal"} -C621273.WXS.N C621273 GBM WXS blood_normal 7316UP-1614-1105218 7316UP-1614-1105218.WholeExome.RP-1303.bam 20276203956 BAM aligned CPTAC3 5d3d6d7b-cca4-4002-837e-bad86e3a1a18 2e091433109db1addf0c857446f74279 {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal"} -C621273.WXS.N.hg38 C621273 GBM WXS blood_normal 7316UP-1614-1105218 75a887df-8b85-437d-9a2f-de23f833d084_wxs_gdc_realn.bam 27908882843 BAM harmonized CPTAC3 45c86f82-bcfc-4617-88fe-057ddca20656 21ad5fde86ef1197421daa92747e05af {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal"} -C621273.WXS.R C621273 GBM WXS recurrent_tumor 7316UP-1614-1105255 7316UP-1614-1105255.WholeExome.RP-1303.bam 25207962561 BAM aligned CPTAC3 682ffb5a-c41d-481c-890e-4eadbc23fb23 f55e27e3724705428c4e861319df1d0f {"aliquot_tag": "ALQ_e34ec9e7", "gdc_sample_type": "Recurrent Tumor"} -C621273.WXS.R.hg38 C621273 GBM WXS recurrent_tumor 7316UP-1614-1105255 4d9473f9-d9c4-4760-9eb4-4d1d2fad1300_wxs_gdc_realn.bam 34314709584 BAM harmonized CPTAC3 5b9fddc3-220e-4e53-ad75-a91acf6a54b8 a9032614cd87d4495467de4434917b29 {"aliquot_tag": "ALQ_e34ec9e7", "gdc_sample_type": "Recurrent Tumor"} -C621273.WXS.T C621273 GBM WXS tumor 7316UP-1405 7316UP-1405.WholeExome.RP-1303.bam 32756236316 BAM aligned CPTAC3 38c4cb2f-7d97-42b1-b7e5-7623a5c63d4c 52b9a5c73234edf7a6d3726c6d1c8f94 {"aliquot_tag": "ALQ_35c85d29", "gdc_sample_type": "Primary Tumor"} -C621273.WXS.T.hg38 C621273 GBM WXS tumor 7316UP-1405 3f83ce79-0cd9-4e7e-9352-726042aff7c8_wxs_gdc_realn.bam 44359010942 BAM harmonized CPTAC3 4daf5e7f-6a2a-4c49-a2cb-abb712bacfae 7a8d36bc1a00c6519bbc2bde6496ee0c {"aliquot_tag": "ALQ_35c85d29", "gdc_sample_type": "Primary Tumor"} -C685110.DUP_1d688b70.MethArray.Green.R C685110 GBM Methylation_Array recurrent_tumor 7316UP-1883 205707890115_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6a427e14-fd5d-408b-9e77-5829b1b658c6 fa958101b2ec015965e541c6d1490a5c {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C685110.DUP_1d688b70.MethArray.Red.R C685110 GBM Methylation_Array recurrent_tumor 7316UP-1883 205707890115_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 459707ac-4a86-4040-af4f-e26d1e5d17aa 8c445ad6b9fddc448039c0d7b34bd044 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C685110.DUP_1d688b70.WGS.R C685110 GBM WGS recurrent_tumor 7316UP-1883 7316UP-1883.WholeGenome.RP-2158.bam 45089603892 BAM aligned CPTAC3 a0633e65-c728-4b6f-82f1-d7a2cbbe5463 2b848756f864d1a8c4df51d0c893a141 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C685110.DUP_1d688b70.WGS.R.hg38 C685110 GBM WGS recurrent_tumor 7316UP-1883 8b9f135a-a4e8-4710-9e29-d7f8884e9931_wgs_gdc_realn.bam 136525178503 BAM harmonized CPTAC3 b9284c83-5df4-4457-9b4d-287385ba3ca2 d7a50e8cd6334102e59e87903c2ea799 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C685110.DUP_1d688b70.WXS.R C685110 GBM WXS recurrent_tumor 7316UP-1883 7316UP-1883.WholeExome.RP-1303.bam 30500869483 BAM aligned CPTAC3 04600742-4a51-4ad6-a18d-d4265c0dfad8 442d8d242df1c9b1fc51c4cd2b950340 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C685110.DUP_1d688b70.WXS.R.hg38 C685110 GBM WXS recurrent_tumor 7316UP-1883 8b9f135a-a4e8-4710-9e29-d7f8884e9931_wxs_gdc_realn.bam 41309267209 BAM harmonized CPTAC3 ac908356-15d9-4fe6-8300-4d6bfcbc4062 142a51ed7c2bf25f0fa579fe211600e5 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C685110.DUP_224ab8cc.MethArray.Green.T C685110 GBM Methylation_Array tumor 7316UP-1640 205705520087_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8517fdba-174e-4f15-8672-b5a9af370395 98ae986e4fd87ad603d438819ebb9ea6 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C685110.DUP_224ab8cc.MethArray.Red.T C685110 GBM Methylation_Array tumor 7316UP-1640 205705520087_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 8ce88b9b-065b-43ee-a50c-f11f75e60388 0b8faab7f4750ae4c1a72977e764a413 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C685110.DUP_224ab8cc.WGS.T C685110 GBM WGS tumor 7316UP-1640 7316UP-1640.WholeGenome.RP-2158.bam 52036892496 BAM aligned CPTAC3 bed75ef0-4e54-4a9d-99f5-ec221870fc82 7814414b25f3467cc474d853de8d0dc1 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C685110.DUP_224ab8cc.WGS.T.hg38 C685110 GBM WGS tumor 7316UP-1640 9cd89b80-7f2d-4caf-9599-4457c80de4cd_wgs_gdc_realn.bam 151360159146 BAM harmonized CPTAC3 8f94f328-8cf9-41b8-b087-10e5793ddcb8 016db991aebfd5173231b3dc684d2f24 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C685110.DUP_224ab8cc.WXS.T C685110 GBM WXS tumor 7316UP-1640 7316UP-1640.WholeExome.RP-1303.bam 31383164675 BAM aligned CPTAC3 e7d41a50-8623-40d3-8aed-23c140a7f820 bd7f3715c003c9664e481252d508b07d {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C685110.DUP_224ab8cc.WXS.T.hg38 C685110 GBM WXS tumor 7316UP-1640 9cd89b80-7f2d-4caf-9599-4457c80de4cd_wxs_gdc_realn.bam 42219310210 BAM harmonized CPTAC3 0da7ee04-c471-488a-900b-44c538d9b274 1a94c4f20680bd7907feb9c01765ea65 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C685110.miRNA-Seq.R.hg38 C685110 GBM miRNA-Seq recurrent_tumor 7316UP-1883-1104817 f03d7cbf-e849-42ad-8f5d-67e3822191ee_mirnaseq_gdc_realn.bam 349281951 BAM harmonized CPTAC3 81402dca-0775-4e8c-85fb-24f045f8d530 3b1ec58d4e2852c7f84554316f6ab472 {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor"} -C685110.miRNA-Seq.S44_L003_R1.T C685110 GBM miRNA-Seq tumor 7316UP-1640-1104801 210817_UNC31-K00269_0302_AHLCTHBBXY_AGTTCC_S44_L003_R1_001.unaln.bam 206155138 BAM S44_L003_R1 unaligned CPTAC3 dc4fd1b7-bf4d-43e5-89f2-478dde46ec37 b159dd6b7790632e3ff66ebdaa945528 {"aliquot_tag": "ALQ_97ba8140", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C685110.miRNA-Seq.S5_L003_R1.R C685110 GBM miRNA-Seq recurrent_tumor 7316UP-1883-1104817 210817_UNC31-K00269_0302_AHLCTHBBXY_CACCGG_S5_L003_R1_001.unaln.bam 299614913 BAM S5_L003_R1 unaligned CPTAC3 d362451e-c2ab-4bef-8d40-dcb37e87c4d1 4908088df251ed4ae27ddcbfd7a86e96 {"aliquot_tag": "ALQ_1605e279", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C685110.miRNA-Seq.T.hg38 C685110 GBM miRNA-Seq tumor 7316UP-1640-1104801 b0dcdc07-8305-4ab3-806d-f52eef38497c_mirnaseq_gdc_realn.bam 230886665 BAM harmonized CPTAC3 1dec6b08-d950-4aef-88a4-f953d384c9db e51517a4e110820c0e53ff04a26f7068 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor"} -C685110.RNA-Seq.chimeric.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.chimeric.gdc_realn.bam 45307028 BAM chimeric harmonized CPTAC3 6a7c419e-1639-4ed4-8475-39b042237fb2 6909c0002f72e7e660766c0b787ee2c1 {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor"} -C685110.RNA-Seq.chimeric.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.chimeric.gdc_realn.bam 116658331 BAM chimeric harmonized CPTAC3 8171d7d7-d344-4458-a039-2ced955f5f02 cd36e3bc7556ee4c24072bf861025ce1 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor"} -C685110.RNA-Seq.genomic.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.genomic.gdc_realn.bam 9672838007 BAM genomic harmonized CPTAC3 14d4bd12-48b5-4981-8c3d-9119a9a216c7 38a4f91682a5ff9dbf1e4e1e73d2ba6d {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor"} -C685110.RNA-Seq.genomic.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.genomic.gdc_realn.bam 8861269527 BAM genomic harmonized CPTAC3 2de6ee3b-51f5-4670-8a32-c6e5242c61ad 530cabd580efe772e1c59a44771ca566 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor"} -C685110.RNA-Seq.S1_L001_R1.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R1_001.fastq.gz 4410505069 FASTQ S1_L001_R1 unaligned CPTAC3 519a2bd8-5dba-4d6a-9ca0-3cc6855d0045 84e0bc351d31f9b4993e48be4fa21ef9 {"aliquot_tag": "ALQ_97ba8140", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C685110.RNA-Seq.S1_L001_R2.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R2_001.fastq.gz 4760327779 FASTQ S1_L001_R2 unaligned CPTAC3 131ac7f3-1651-4192-83cb-6f9a97cbc981 bb48a6309cb400fb8d671dfdc2012903 {"aliquot_tag": "ALQ_97ba8140", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C685110.RNA-Seq.S25_L007_R1.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 3583102105 FASTQ S25_L007_R1 unaligned CPTAC3 0ff23a92-6ade-4e6b-9867-2c64eb28c3de 0617ae40b2cca440a40a1fe8dc272127 {"aliquot_tag": "ALQ_1605e279", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C685110.RNA-Seq.S25_L007_R2.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 3728372708 FASTQ S25_L007_R2 unaligned CPTAC3 3652dfbb-4928-4636-9f9a-16069dc753ca c2b8a12c902c9d544c8f557f247faa15 {"aliquot_tag": "ALQ_1605e279", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C685110.RNA-Seq.transcriptome.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.transcriptome.gdc_realn.bam 13118774964 BAM transcriptome harmonized CPTAC3 27472be8-b1e4-44e3-bbe4-9010d686d585 e1da09031fb04370c01ffc94a3cca09f {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor"} -C685110.RNA-Seq.transcriptome.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.transcriptome.gdc_realn.bam 20035746462 BAM transcriptome harmonized CPTAC3 2922cc31-d43a-42e3-9eb2-79fa8376db87 b2a87983ec8ce320ed558c23cd8a0b08 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor"} -C685110.WGS.N C685110 GBM WGS blood_normal 7316UP-1640-1105277 7316UP-1640-1105277.WholeGenome.RP-2158.bam 46238585989 BAM aligned CPTAC3 fbea3bb4-541a-4972-ac52-526e12b87ed2 77edcf03df4527c3a8be2a3f11e49ea2 {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal"} -C685110.WGS.N.hg38 C685110 GBM WGS blood_normal 7316UP-1640-1105277 6ff375e3-b12b-4613-b2fa-92050083e4d4_wgs_gdc_realn.bam 137528306793 BAM harmonized CPTAC3 e25543a2-1b16-473c-880f-e6958968eaa9 1370a7932626ad488f113f966541c60f {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal"} -C685110.WGS.T C685110 GBM WGS tumor 7316UP-1640-1105266 7316UP-1640-1105266.WholeGenome.RP-2158.bam 52796552329 BAM aligned CPTAC3 b081720c-6818-4299-916b-e2895fa2bb0e 5b86bf9d2e253af28c91c58f920a8626 {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor"} -C685110.WGS.T.hg38 C685110 GBM WGS tumor 7316UP-1640-1105266 1e2e1134-2810-4845-91cb-feed8c0cb7af_wgs_gdc_realn.bam 146654906111 BAM harmonized CPTAC3 fbd79a73-b732-40ef-a0f4-958216263a3c a7d12620ecb52452d39acba5eedf1187 {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor"} -C685110.WXS.N C685110 GBM WXS blood_normal 7316UP-1640-1105277 7316UP-1640-1105277.WholeExome.RP-1303.bam 26076619092 BAM aligned CPTAC3 b5898748-110f-4c82-b9d6-1fcb24a9253c 2a9122df46791d6874c664830397fee6 {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal"} -C685110.WXS.N.hg38 C685110 GBM WXS blood_normal 7316UP-1640-1105277 6ff375e3-b12b-4613-b2fa-92050083e4d4_wxs_gdc_realn.bam 35274824769 BAM harmonized CPTAC3 5d4f21f6-d0a3-479d-a3fe-b84b1c27cfa4 d8cde9b75dacbca7b897eff91009ccc7 {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal"} -C685110.WXS.T C685110 GBM WXS tumor 7316UP-1640-1105266 7316UP-1640-1105266.WholeExome.RP-1303.bam 24916908755 BAM aligned CPTAC3 9d0a809c-159d-4108-bd85-d202c3174aa9 1d0e55a63658aba3ebbf261099d1cb60 {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor"} -C685110.WXS.T.hg38 C685110 GBM WXS tumor 7316UP-1640-1105266 1e2e1134-2810-4845-91cb-feed8c0cb7af_wxs_gdc_realn.bam 34019804973 BAM harmonized CPTAC3 533ec6cf-ac77-4d87-ad54-c8f34025c447 25588b15abcd9fb17d63e76733c6934b {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor"} -C760878.DUP_8e047fa6.MethArray.Green.R C760878 GBM Methylation_Array recurrent_tumor 7316UP-2726 205705520154_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35679230-1353-4e92-865c-2923a832f0ee 195673c04662146069558851d1c79c3e {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C760878.DUP_8e047fa6.MethArray.Red.R C760878 GBM Methylation_Array recurrent_tumor 7316UP-2726 205705520154_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 81c07275-a44f-4484-a191-7b6f69aa2856 2c9d85d67aa6fbfc85f71935defd8c65 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C760878.DUP_8e047fa6.WGS.R C760878 GBM WGS recurrent_tumor 7316UP-2726 7316UP-2726.WholeGenome.RP-2158.bam 51148367936 BAM aligned CPTAC3 86ad293f-7896-44da-b5ee-6136091f3ec1 a1f97f8051cd3de27ac0568c1889ea40 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C760878.DUP_8e047fa6.WGS.R.hg38 C760878 GBM WGS recurrent_tumor 7316UP-2726 9952742f-5995-4aa6-8b29-737ef9b7e3b3_wgs_gdc_realn.bam 153565762186 BAM harmonized CPTAC3 040387a5-52ee-4943-a357-5cfce917bdc4 0ae3f193c0f43b8c3b95ee2545eb7e45 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C760878.DUP_8e047fa6.WXS.R C760878 GBM WXS recurrent_tumor 7316UP-2726 7316UP-2726.WholeExome.RP-1303.bam 34826010175 BAM aligned CPTAC3 09bdc2a5-d466-4c7c-a812-a04762110d28 71f476c6099292d96fb9c2fe959bda31 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C760878.DUP_8e047fa6.WXS.R.hg38 C760878 GBM WXS recurrent_tumor 7316UP-2726 9952742f-5995-4aa6-8b29-737ef9b7e3b3_wxs_gdc_realn.bam 47319708005 BAM harmonized CPTAC3 803642be-4348-4ebb-93d9-8b74d13f6bf2 59ec82faec890a31abd94f7f234b00f4 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C760878.DUP_b1ddc47c.MethArray.Green.T C760878 GBM Methylation_Array tumor 7316UP-1843 205705520083_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 4996fa9a-a666-4f7b-a843-9be2a298d8dd 82332fa3845df5188180e0ef3087552f {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C760878.DUP_b1ddc47c.MethArray.Red.T C760878 GBM Methylation_Array tumor 7316UP-1843 205705520083_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 997ff62d-c2d5-4ce6-8aa1-7ed60e89724b a1702b5f70235508c5e7d911854b7d78 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C760878.DUP_b1ddc47c.WGS.T C760878 GBM WGS tumor 7316UP-1843 7316UP-1843.WholeGenome.RP-2158.bam 52659142864 BAM aligned CPTAC3 3521f7d5-7f2f-49a4-a056-677cf68534cf 13eed2638a303910faba6a6124bedd92 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C760878.DUP_b1ddc47c.WGS.T.hg38 C760878 GBM WGS tumor 7316UP-1843 9efda7a7-d54a-492b-9158-88f2644e909f_wgs_gdc_realn.bam 156692335603 BAM harmonized CPTAC3 76cfa23a-9aa9-41dd-945e-7806a9faa235 c420e8da770f1d5bb26651cbbdd26c44 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C760878.DUP_b1ddc47c.WXS.T C760878 GBM WXS tumor 7316UP-1843 7316UP-1843.WholeExome.RP-1303.bam 27174083246 BAM aligned CPTAC3 ccb3f38a-9134-4fc4-8a72-71f766a29c9d 156582dd20a1d821292563bf63984d9f {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C760878.DUP_b1ddc47c.WXS.T.hg38 C760878 GBM WXS tumor 7316UP-1843 9efda7a7-d54a-492b-9158-88f2644e909f_wxs_gdc_realn.bam 36863375757 BAM harmonized CPTAC3 dae070e2-2c6a-49ba-ae92-6f2319325e2a a6aaa3e042802eb411fef68ecd390913 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C760878.miRNA-Seq.R.hg38 C760878 GBM miRNA-Seq recurrent_tumor 7316UP-2726-1104803 e49855a4-003c-4264-9715-435c165ac24a_mirnaseq_gdc_realn.bam 322496254 BAM harmonized CPTAC3 89d11119-3e93-4197-8d57-6e3547e7bb77 ad82887f5280c62bfcc88391f35911fc {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor"} -C760878.miRNA-Seq.S41_L002_R1.T C760878 GBM miRNA-Seq tumor 7316UP-1843-1104791 210817_UNC31-K00269_0302_AHLCTHBBXY_TGACCA_S41_L002_R1_001.unaln.bam 169727575 BAM S41_L002_R1 unaligned CPTAC3 90bc24a4-cc91-42cf-9b26-4efacc9fac14 38b53d8a54763bd5af39b8fc092f4483 {"aliquot_tag": "ALQ_26df6af7", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C760878.miRNA-Seq.S46_L003_R1.R C760878 GBM miRNA-Seq recurrent_tumor 7316UP-2726-1104803 210817_UNC31-K00269_0302_AHLCTHBBXY_CCGTCC_S46_L003_R1_001.unaln.bam 279335716 BAM S46_L003_R1 unaligned CPTAC3 ba3e5fc9-e21d-4a7f-8dd8-ea9f4c476948 23fcadd519ecce30ed2a049b7bf24f89 {"aliquot_tag": "ALQ_b1a0e491", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C760878.miRNA-Seq.T.hg38 C760878 GBM miRNA-Seq tumor 7316UP-1843-1104791 b863722f-46c4-4aa5-a36f-c052b7c9822a_mirnaseq_gdc_realn.bam 193027906 BAM harmonized CPTAC3 1fb72deb-c4b8-4713-abdf-e8c2512da083 9e37bb0868d39278a328210c250b22a5 {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor"} -C760878.RNA-Seq.chimeric.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.chimeric.gdc_realn.bam 111407017 BAM chimeric harmonized CPTAC3 8b6d8957-5d0c-4c14-a23e-5f525ec51563 0f78dba424a5a2c931402f128e04b265 {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor"} -C760878.RNA-Seq.chimeric.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.chimeric.gdc_realn.bam 157411492 BAM chimeric harmonized CPTAC3 a643cc1e-9e00-4060-a13c-98d361d982da 84c2e42eb7ec4ad487c29ed219f098ce {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor"} -C760878.RNA-Seq.genomic.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.genomic.gdc_realn.bam 7958016593 BAM genomic harmonized CPTAC3 28620a9c-d98c-49c7-86e3-c1219b7851ba 2d1d3e8168bd0875ad959a815521a684 {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor"} -C760878.RNA-Seq.genomic.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.genomic.gdc_realn.bam 7122744863 BAM genomic harmonized CPTAC3 7a62d98d-5e1a-4bc5-81df-3e4ab96ca6e6 4449cc45acf2469538173fe8250ed877 {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor"} -C760878.RNA-Seq.S22_L006_R1.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3626934770 FASTQ S22_L006_R1 unaligned CPTAC3 c47b1200-7652-4875-9681-8bdcd0de7ac0 b4060c099fd3e7d50b945e2d3892b080 {"aliquot_tag": "ALQ_b1a0e491", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C760878.RNA-Seq.S22_L006_R2.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 3977519333 FASTQ S22_L006_R2 unaligned CPTAC3 b8645040-f99b-4031-88bb-231e179d10f0 98e22a784083a347faf55086f7ec6455 {"aliquot_tag": "ALQ_b1a0e491", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C760878.RNA-Seq.S6_L002_R1.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3428466031 FASTQ S6_L002_R1 unaligned CPTAC3 86b299c6-96ce-4d99-b32b-76a4bcd9ee4c f6b0d9add39f2e7b0c9e526595f213ee {"aliquot_tag": "ALQ_26df6af7", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C760878.RNA-Seq.S6_L002_R2.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3707998190 FASTQ S6_L002_R2 unaligned CPTAC3 51ca63ce-fa0b-4327-b258-dc34abd61afc c48910bc1037cfc3a36fb2eb3bb1dd7e {"aliquot_tag": "ALQ_26df6af7", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C760878.RNA-Seq.transcriptome.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.transcriptome.gdc_realn.bam 11373368602 BAM transcriptome harmonized CPTAC3 10efdc1b-8d45-42d1-95c0-01a7fcbf57aa 3b0b8854f28f9377ae002afb129be1ef {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor"} -C760878.RNA-Seq.transcriptome.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.transcriptome.gdc_realn.bam 14763470994 BAM transcriptome harmonized CPTAC3 c1fdcf21-75e0-412b-8f47-f4f9e01d4aa2 72f89b1128c1fba16068848d84597223 {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor"} -C760878.WGS.R C760878 GBM WGS recurrent_tumor 7316UP-2726-1105268 7316UP-2726-1105268.WholeGenome.RP-2158.bam 43181516048 BAM aligned CPTAC3 e87422a4-53c4-4a78-b552-e769f2560d10 952a50dc22c514c8d1324c81ad2ff0e3 {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor"} -C760878.WGS.R.hg38 C760878 GBM WGS recurrent_tumor 7316UP-2726-1105268 109d765d-2923-47ce-b9bc-cce594d1512c_wgs_gdc_realn.bam 126333949057 BAM harmonized CPTAC3 a01eb922-248a-40e9-9fe1-731c18c8cd9a 98abe63ee266261f6e627dd12adeafe2 {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor"} -C760878.WGS.T C760878 GBM WGS tumor 7316UP-1843-1105254 7316UP-1843-1105254.WholeGenome.RP-2158.bam 64521345577 BAM aligned CPTAC3 1450f6a2-0de0-4974-81fd-c7d489cee875 6291e068006afcd5a6b4637dc958717a {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor"} -C760878.WGS.T.hg38 C760878 GBM WGS tumor 7316UP-1843-1105254 ad3ce926-8ffc-46c4-87c9-64fba596ac12_wgs_gdc_realn.bam 181254456613 BAM harmonized CPTAC3 f90f44ce-8e3a-4a48-9595-0f118b7d2136 d70103eba72415ed913d2864a7dd026b {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor"} -C760878.WXS.N C760878 GBM WXS blood_normal 7316UP-1843-1105278 7316UP-1843-1105278.WholeExome.RP-1303.bam 25612276094 BAM aligned CPTAC3 4254f062-9dc7-489e-816a-23711fe63892 3cb3084c36f9c4044fcbcd4758015b57 {"aliquot_tag": "ALQ_7ff75a53", "gdc_sample_type": "Blood Derived Normal"} -C760878.WXS.N.hg38 C760878 GBM WXS blood_normal 7316UP-1843-1105278 0d3f7051-f710-4f75-801e-a163b2a7c958_wxs_gdc_realn.bam 34942652944 BAM harmonized CPTAC3 26a2fe79-198a-45a6-9329-ac32ed951da4 b63f9e35509de826d11dae0fd4b0f5c6 {"aliquot_tag": "ALQ_7ff75a53", "gdc_sample_type": "Blood Derived Normal"} -C760878.WXS.R C760878 GBM WXS recurrent_tumor 7316UP-2726-1105268 7316UP-2726-1105268.WholeExome.RP-1303.bam 36649596530 BAM aligned CPTAC3 4d2157f1-28d9-4e05-8f9d-a4424b09c858 8f124c78ab2e85e2f8312c3d32f3762b {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor"} -C760878.WXS.R.hg38 C760878 GBM WXS recurrent_tumor 7316UP-2726-1105268 109d765d-2923-47ce-b9bc-cce594d1512c_wxs_gdc_realn.bam 50407336546 BAM harmonized CPTAC3 6c4e1c9b-a2e2-4502-8e26-82b89fad92ae 61d385dfed7a1efec00331d0403e1dfd {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor"} -C760878.WXS.T C760878 GBM WXS tumor 7316UP-1843-1105254 7316UP-1843-1105254.WholeExome.RP-1303.bam 24231661236 BAM aligned CPTAC3 ae2999a1-41b5-4226-b4c7-47045e937235 5a40c541dfe91688a386b9c6050dd688 {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor"} -C760878.WXS.T.hg38 C760878 GBM WXS tumor 7316UP-1843-1105254 ad3ce926-8ffc-46c4-87c9-64fba596ac12_wxs_gdc_realn.bam 34062192234 BAM harmonized CPTAC3 5495a6ee-951b-4613-b9d3-3344fe76a916 9850ea6c26bdb95ab720a8ed7d6898e2 {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor"} -C761370.DUP_260f1df4.MethArray.Green.T C761370 GBM Methylation_Array tumor 7316UP-1848 205854150177_R07C01_Grn.idat 13677893 IDAT Green NA CPTAC3 79ce9446-5aad-4f6e-800c-870d5c7c856d 6e9b8ee86d408604c6a278d111065a6c {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C761370.DUP_260f1df4.MethArray.Red.T C761370 GBM Methylation_Array tumor 7316UP-1848 205854150177_R07C01_Red.idat 13677893 IDAT Red NA CPTAC3 b80ed94e-d5cb-43c0-9a9a-f697c73912d8 dcba89c93fbc81b5cc8ee006f88a7880 {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C761370.DUP_260f1df4.WGS.T C761370 GBM WGS tumor 7316UP-1848 7316UP-1848.WholeGenome.RP-2158.bam 51644080684 BAM aligned CPTAC3 3ff9d2fc-c389-4747-8648-f030c20b2c18 412c1506cb1068fc73b87256ba3d05e4 {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C761370.DUP_260f1df4.WGS.T.hg38 C761370 GBM WGS tumor 7316UP-1848 59ba09c2-abf4-46dd-b566-c703d8da80e5_wgs_gdc_realn.bam 153860990638 BAM harmonized CPTAC3 f5979a9a-e1e5-4b1e-8a6d-971a8619cdb2 ce9ca6d3af470190eb668840c3e77d89 {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C761370.DUP_260f1df4.WXS.T C761370 GBM WXS tumor 7316UP-1848 7316UP-1848.WholeExome.RP-1303.bam 31981438733 BAM aligned CPTAC3 6dce99c6-b5a5-4ee0-8ee6-1e02ebf260a2 6c5be4d787070125a99a4f6e292b78bd {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C761370.DUP_260f1df4.WXS.T.hg38 C761370 GBM WXS tumor 7316UP-1848 59ba09c2-abf4-46dd-b566-c703d8da80e5_wxs_gdc_realn.bam 44821987147 BAM harmonized CPTAC3 fd66e1f9-ce3b-4a76-9e48-23bf78568f41 a94ee7e68570950dc20cb0048c899e3e {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C761370.DUP_4b43218c.MethArray.Green.R C761370 GBM Methylation_Array recurrent_tumor 7316UP-2310 205854150169_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ff58beb8-e646-41a6-a815-0b18fb8a2519 5359f544f75f1d27c9ac8d6216c5abcd {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_4b43218c.MethArray.Red.R C761370 GBM Methylation_Array recurrent_tumor 7316UP-2310 205854150169_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 6a560bdc-9c45-48d1-aeba-0eeb3791ebb9 45c50335b876517e3110b2bf981e5554 {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_4b43218c.WGS.R C761370 GBM WGS recurrent_tumor 7316UP-2310 7316UP-2310.WholeGenome.RP-2158.bam 47338708829 BAM aligned CPTAC3 953902f7-b5d0-4995-b32c-744a5d69fd57 f1596834fd222bd076253d02243d81bb {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_4b43218c.WGS.R.hg38 C761370 GBM WGS recurrent_tumor 7316UP-2310 5ac7956a-d521-4b91-9211-8b98765fa4b0_wgs_gdc_realn.bam 139056330460 BAM harmonized CPTAC3 35de409f-b939-48b7-a446-1f71686bd915 b166f1579ba45d00ff5fc46aef8c77ce {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_4b43218c.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310 7316UP-2310.WholeExome.RP-1303.bam 47745759188 BAM aligned CPTAC3 7f3a3a5d-557b-4af6-aed2-7e7b2c9ddfed 98949ae96661939248fd4c79723bf6d6 {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_4b43218c.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310 5ac7956a-d521-4b91-9211-8b98765fa4b0_wxs_gdc_realn.bam 65618004180 BAM harmonized CPTAC3 59bd5a44-f128-4533-b8ee-41b318cebae9 7cc2edd115a612685126fede965b217b {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_d11a2397.WGS.R C761370 GBM WGS recurrent_tumor 7316UP-2310-1105240 7316UP-2310-1105240.WholeGenome.RP-2158.bam 50186159916 BAM aligned CPTAC3 541eba21-ad2a-4c21-ba54-688ccbd3ae91 a2248078c0926f5e5c00cb4e544f3f74 {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_d11a2397.WGS.R.hg38 C761370 GBM WGS recurrent_tumor 7316UP-2310-1105240 f90fe2dd-2e89-4710-b776-511427fa2a84_wgs_gdc_realn.bam 152510216231 BAM harmonized CPTAC3 7b3c75af-189f-4135-a095-4c8d7b85b34f bf4223e5267bb399b3a7b400cf3a803a {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_d11a2397.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310-1105240 7316UP-2310-1105240.WholeExome.RP-1303.bam 24522804264 BAM aligned CPTAC3 2f90a34c-c645-448d-a51b-b45d398c728a 3450f62644b64e0faf890f9c6101da2f {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.DUP_d11a2397.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310-1105240 f90fe2dd-2e89-4710-b776-511427fa2a84_wxs_gdc_realn.bam 33109931762 BAM harmonized CPTAC3 6b5e7c63-dd7e-474b-bb0b-1ac39be42e15 7256e2b172dc9abb2e6bf464a3cf81d8 {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C761370.miRNA-Seq.R.hg38 C761370 GBM miRNA-Seq recurrent_tumor 7316UP-2310-1104757 b133437a-b37d-429b-97c6-0c4af7d9b477_mirnaseq_gdc_realn.bam 317162321 BAM harmonized CPTAC3 e92f2767-6478-436b-99db-188911216cfc 21ea679eacd2b09ce52d90ef8d20447d {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor"} -C761370.miRNA-Seq.S18_L001_R1.R C761370 GBM miRNA-Seq recurrent_tumor 7316UP-2310-1104757 210817_UNC31-K00269_0302_AHLCTHBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 277481764 BAM S18_L001_R1 unaligned CPTAC3 d0acb96c-704f-4db7-b5df-116d52c68891 0bf880c98874ff6c5f8264ccbd6ec313 {"aliquot_tag": "ALQ_e81222fb", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C761370.miRNA-Seq.S27_L002_R1.T C761370 GBM miRNA-Seq tumor 7316UP-1848-1104789 210817_UNC31-K00269_0302_AHLCTHBBXY_CGATGT_S27_L002_R1_001.unaln.bam 90036960 BAM S27_L002_R1 unaligned CPTAC3 45a78742-a2e6-4c38-bb44-be65912f364c d63f00e1f669d2a6b3bb636b52ca1c44 {"aliquot_tag": "ALQ_b34a4d59", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C761370.miRNA-Seq.T.hg38 C761370 GBM miRNA-Seq tumor 7316UP-1848-1104789 fd0a2cb3-a195-4905-b5b5-ec1be9a356a7_mirnaseq_gdc_realn.bam 106309257 BAM harmonized CPTAC3 69589c0f-8265-4baf-b8ac-22282d21cda2 9ba3f193adf8025f7a072028faaeef82 {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor"} -C761370.RNA-Seq.chimeric.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.chimeric.gdc_realn.bam 79588049 BAM chimeric harmonized CPTAC3 af913e01-10a5-4b7f-943a-b16ff81cbd2d 5ddc882ef783108d47cb6cc26366b34e {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor"} -C761370.RNA-Seq.chimeric.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.chimeric.gdc_realn.bam 46178356 BAM chimeric harmonized CPTAC3 a2f556c0-75e5-47d1-b992-3e3dcbe4ce60 f832495810a9ffa921cd908c3ab6e9de {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor"} -C761370.RNA-Seq.genomic.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.genomic.gdc_realn.bam 9445323463 BAM genomic harmonized CPTAC3 6dcdcbe6-7208-4d07-b5c1-ef5fa8dda187 54a854be1c871fc2a2d2b8db3a0c9c6c {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor"} -C761370.RNA-Seq.genomic.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.genomic.gdc_realn.bam 9319554993 BAM genomic harmonized CPTAC3 151c4db5-7e2f-449f-b91d-1086a6ace6a5 270e958a0a4fff398b2c2c24180aaf6a {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor"} -C761370.RNA-Seq.S14_L004_R1.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R1_001.fastq.gz 3749935230 FASTQ S14_L004_R1 unaligned CPTAC3 5888865b-8b1c-409f-849d-a969b1c7d9f1 ab0f425080e0a1aba0f09caabed29e1c {"aliquot_tag": "ALQ_e81222fb", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C761370.RNA-Seq.S14_L004_R2.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R2_001.fastq.gz 4064864677 FASTQ S14_L004_R2 unaligned CPTAC3 31f61c3a-670a-4635-b769-0a5f9dd7d8f2 f2c7ffd07e321d8cf6672c240e01938e {"aliquot_tag": "ALQ_e81222fb", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C761370.RNA-Seq.S5_L002_R1.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R1_001.fastq.gz 3676602157 FASTQ S5_L002_R1 unaligned CPTAC3 dca91fcb-3f8f-44de-965d-65e921a02fd5 6e0e66b1e873676662e18e10ca06e71e {"aliquot_tag": "ALQ_b34a4d59", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C761370.RNA-Seq.S5_L002_R2.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R2_001.fastq.gz 4065964829 FASTQ S5_L002_R2 unaligned CPTAC3 f0d9622c-b439-4941-94bb-29baf4448bed 54876ba181e25a5bd27b37a8b70b60b5 {"aliquot_tag": "ALQ_b34a4d59", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C761370.RNA-Seq.transcriptome.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.transcriptome.gdc_realn.bam 13559423868 BAM transcriptome harmonized CPTAC3 a39c3e40-b755-4233-9e4e-bb9b3728e6c6 8ec20e16a45144fd6a277ee1c6a5878a {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor"} -C761370.RNA-Seq.transcriptome.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.transcriptome.gdc_realn.bam 12614732431 BAM transcriptome harmonized CPTAC3 e8abab16-c4a5-4d7a-9c03-4b05fa76ddac f81880dc354e7a4253504eaa0dfe64c8 {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor"} -C761370.WGS.N C761370 GBM WGS blood_normal 7316UP-1848-1105210 7316UP-1848-1105210.WholeGenome.RP-2158.bam 59941947727 BAM aligned CPTAC3 7d7f64b0-e6ca-4440-b1cb-408cc666bf7f c104956c161dc565fd1a656736d3b956 {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal"} -C761370.WGS.N.hg38 C761370 GBM WGS blood_normal 7316UP-1848-1105210 bb429402-6251-49ac-a5e1-ec64c0707765_wgs_gdc_realn.bam 180943302646 BAM harmonized CPTAC3 8d798315-d251-4b30-9ae8-46eef4166aaf 1e703bbbabe17a4029592c1015dd76a4 {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal"} -C761370.WGS.T C761370 GBM WGS tumor 7316UP-1848-1105252 7316UP-1848-1105252.WholeGenome.RP-2158.bam 52242174534 BAM aligned CPTAC3 b7a46c7c-1369-4b72-b781-d5b05e0c5d67 a1d299f96de11b27c06ca49d4ec7d30b {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor"} -C761370.WGS.T.hg38 C761370 GBM WGS tumor 7316UP-1848-1105252 94dc4f39-5f41-450e-bc88-b5efb574ab4b_wgs_gdc_realn.bam 155112892361 BAM harmonized CPTAC3 f6231081-86d3-4b91-9b78-69de532a74ef 5463218bb3d0c95d2e7ff92e4ce38405 {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor"} -C761370.WXS.N C761370 GBM WXS blood_normal 7316UP-1848-1105210 7316UP-1848-1105210.WholeExome.RP-1303.bam 25632609658 BAM aligned CPTAC3 8c32252a-765b-4a13-9be9-59adf0e39899 e88ecda84eb4c45dd039ce33c101a0ae {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal"} -C761370.WXS.N.hg38 C761370 GBM WXS blood_normal 7316UP-1848-1105210 bb429402-6251-49ac-a5e1-ec64c0707765_wxs_gdc_realn.bam 35051751247 BAM harmonized CPTAC3 a3f91b31-1981-4536-bea9-8789c28a0305 5bf375786759bbd98bb80bce2fe7d6b9 {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal"} -C761370.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310-1105220 7316UP-2310-1105220.WholeExome.RP-1303.bam 22328978006 BAM aligned CPTAC3 f382759e-25f0-4a31-8f29-81ad8af13155 da7740d4ac4f7d4cd6f9188c4473522a {"aliquot_tag": "ALQ_87408411", "gdc_sample_type": "Recurrent Tumor"} -C761370.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310-1105220 b14b1e47-08b6-42b7-bd19-383cbdd4d943_wxs_gdc_realn.bam 30196177408 BAM harmonized CPTAC3 37c7127f-01a5-43e3-8c85-dd62630aaf80 ec73e1342597494a8a0fed23adb516a3 {"aliquot_tag": "ALQ_87408411", "gdc_sample_type": "Recurrent Tumor"} -C761370.WXS.T C761370 GBM WXS tumor 7316UP-1848-1105252 7316UP-1848-1105252.WholeExome.RP-1303.bam 25751689208 BAM aligned CPTAC3 910901e4-d63f-41b2-b866-a602bc9a17d5 fa4331a6ad767ad0960dd52536ca5c71 {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor"} -C761370.WXS.T.hg38 C761370 GBM WXS tumor 7316UP-1848-1105252 94dc4f39-5f41-450e-bc88-b5efb574ab4b_wxs_gdc_realn.bam 34824648092 BAM harmonized CPTAC3 8541768d-a439-4abf-987e-d08039a4ec1d fc07bdda5aeda5dd9c8d189601c84f86 {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor"} -C827913.DUP_97c68cdd.miRNA-Seq.R.hg38 C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2527-1104816 a0414d6e-dfae-41ef-af95-8ada454e42bc_mirnaseq_gdc_realn.bam 201335189 BAM harmonized CPTAC3 39926bff-5c62-490b-9a58-cae66e2f2fce 2ed59e9f3af50280cf7c07fa586c9439 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_97c68cdd.miRNA-Seq.S4_L003_R1.R C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2527-1104816 210817_UNC31-K00269_0302_AHLCTHBBXY_CAACTA_S4_L003_R1_001.unaln.bam 177299449 BAM S4_L003_R1 unaligned CPTAC3 4809d41d-5cde-4587-b4c2-9cb160f50336 c88e1d18a82236a93e8d230203365288 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_97c68cdd.RNA-Seq.chimeric.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.chimeric.gdc_realn.bam 80665175 BAM chimeric harmonized CPTAC3 3bcb2523-bd25-4dee-bf24-9eb1d57a6626 ca028e3e9bf431e279ecf3a35706be5f {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_97c68cdd.RNA-Seq.genomic.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.genomic.gdc_realn.bam 10532417541 BAM genomic harmonized CPTAC3 bd9ede12-b516-4d3a-abec-5c7781905508 a0bf21c1af1f611171485026d194c8cb {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_97c68cdd.RNA-Seq.S8_L002_R1.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R1_001.fastq.gz 4131847766 FASTQ S8_L002_R1 unaligned CPTAC3 7d9d1934-c881-4f7f-868e-7ff2720591ce ce1a6ef739ee98aa460df864d4b29cc3 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_97c68cdd.RNA-Seq.S8_L002_R2.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R2_001.fastq.gz 4505545231 FASTQ S8_L002_R2 unaligned CPTAC3 81cfe120-ec7e-48d7-8468-c407c8fef01e 7dcd43d256201d30395355847bb0affe {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_97c68cdd.RNA-Seq.transcriptome.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.transcriptome.gdc_realn.bam 13825377767 BAM transcriptome harmonized CPTAC3 a343ed39-7d5d-43f7-a056-b4308ef98195 fd3f146a1cd82080689ce362a44ccc29 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_cd3f587f.WGS.R C827913 GBM WGS recurrent_tumor 7316UP-2333-1105221 7316UP-2333-1105221.WholeGenome.RP-2158.bam 50801966508 BAM aligned CPTAC3 49589c76-14e2-4739-a8ae-697ffa6e766d d76147ab25723eacbf809e74fe7626ce {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_cd3f587f.WGS.R.hg38 C827913 GBM WGS recurrent_tumor 7316UP-2333-1105221 90f0199a-aa4c-4d48-8997-f1c9eae013ef_wgs_gdc_realn.bam 146875053843 BAM harmonized CPTAC3 34fb7b33-5986-4a1c-bb81-d599e1689a6a 427f719e6ca33c72708882d39aa2e41b {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_cd3f587f.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2333-1105221 7316UP-2333-1105221.WholeExome.RP-1303.bam 25737528247 BAM aligned CPTAC3 e2e74c07-30bd-46c6-8342-53602855857b 1802d1a1cea35c6220e56e6521f5df6b {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_cd3f587f.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2333-1105221 90f0199a-aa4c-4d48-8997-f1c9eae013ef_wxs_gdc_realn.bam 35071520204 BAM harmonized CPTAC3 f4a1b799-9800-4149-b46e-8a07674ea891 2096675d9019402f616d0bbb7d848eab {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_fa879b5e.MethArray.Green.R C827913 GBM Methylation_Array recurrent_tumor 7316UP-2527 205705520162_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 2202b70f-e796-4046-908c-1ae86bc0fb59 e62e38f42b78fa26957401ae6f0649ce {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_fa879b5e.MethArray.Red.R C827913 GBM Methylation_Array recurrent_tumor 7316UP-2527 205705520162_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 22a9dc44-12b0-4423-a48c-a6ecad43c9a8 ea36ad1427e8d2875ffa17c638a0f82c {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_fa879b5e.WGS.R C827913 GBM WGS recurrent_tumor 7316UP-2527 7316UP-2527.WholeGenome.RP-2158.bam 52154368925 BAM aligned CPTAC3 de2c3484-c0cb-4e24-942a-23f0a8eb2ed3 e875aee1e02d798e798d3f890ee3383f {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_fa879b5e.WGS.R.hg38 C827913 GBM WGS recurrent_tumor 7316UP-2527 67934a81-f8c6-4acd-a3b3-40049799a709_wgs_gdc_realn.bam 156529037966 BAM harmonized CPTAC3 defb223c-cd77-4d8c-baec-bae879fc10b8 82e2b5dea032f57305cc7eb0305783a8 {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_fa879b5e.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2527 7316UP-2527.WholeExome.RP-1303.bam 26171566550 BAM aligned CPTAC3 06e0be11-40ec-4fd8-a9c5-bb169e9f21b1 e10f6c5d6d3772135983786d4459e1b5 {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.DUP_fa879b5e.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2527 67934a81-f8c6-4acd-a3b3-40049799a709_wxs_gdc_realn.bam 35289714577 BAM harmonized CPTAC3 cc70d409-ca55-4291-86ea-42a6392b7a38 701e3f2d79ce78dc71eee3c363d56e9d {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C827913.MethArray.Green.T C827913 GBM Methylation_Array tumor 7316UP-2058 205854150177_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 4576ef53-7a29-474c-b907-952e6af9d66e a5efa335b556449c9b57b4a0865f9f09 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor"} -C827913.MethArray.Red.T C827913 GBM Methylation_Array tumor 7316UP-2058 205854150177_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 20855ccc-7abe-48f3-bb76-223aa6dfc3cb 5fe1002571cb0ba8fbb4fe3a41f15d07 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor"} -C827913.miRNA-Seq.R.hg38 C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2333-1104758 906f97f4-bb26-4ae1-b1f0-9f56545b18b7_mirnaseq_gdc_realn.bam 256262620 BAM harmonized CPTAC3 2deaa3d3-59c6-4c0e-be74-87d39b9c7daa 773f581c1df4d7be0ec21ca6ccd58b10 {"aliquot_tag": "ALQ_45d5d392", "gdc_sample_type": "Recurrent Tumor"} -C827913.miRNA-Seq.S19_L001_R1.R C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2333-1104758 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 230796185 BAM S19_L001_R1 unaligned CPTAC3 b0c18c39-a865-464f-92bb-9182e0dd93bf bac1108e0a0f5b959487f7bfca1bd088 {"aliquot_tag": "ALQ_45d5d392", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C827913.WGS.N C827913 GBM WGS blood_normal 7316UP-2058-1105217 7316UP-2058-1105217.WholeGenome.RP-2158.bam 66390255486 BAM aligned CPTAC3 b77d8996-e5d1-4181-8115-bdb50a062ab5 c5760db656ccec3d5d74cfeee2f86ede {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal"} -C827913.WGS.N.hg38 C827913 GBM WGS blood_normal 7316UP-2058-1105217 d9f92625-c0ca-4040-bdda-9dfdbb0d898c_wgs_gdc_realn.bam 185504306702 BAM harmonized CPTAC3 f261a842-13a0-46c7-a457-6044eb7312a9 3735c87f2f1565ad2fb1121008842e3d {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal"} -C827913.WGS.T C827913 GBM WGS tumor 7316UP-2058 7316UP-2058.WholeGenome.RP-2158.bam 57079724828 BAM aligned CPTAC3 64c68951-6295-4e75-8222-6a09e134fab5 c8721c32734a6f9227bc0e4e28eb42c2 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor"} -C827913.WGS.T.hg38 C827913 GBM WGS tumor 7316UP-2058 04ca4248-176f-4eda-89af-30230af7817d_wgs_gdc_realn.bam 169228846020 BAM harmonized CPTAC3 7fa9454f-837a-4544-a1d8-091244567425 2c937d120be7056541f59b44c5c73f31 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor"} -C827913.WXS.N C827913 GBM WXS blood_normal 7316UP-2058-1105217 7316UP-2058-1105217.WholeExome.RP-1303.bam 27986255546 BAM aligned CPTAC3 f7344d7a-80b3-4e8c-8244-471c07ad98e8 8bd4d5c5bf0a6fa84b49156ce2b68e04 {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal"} -C827913.WXS.N.hg38 C827913 GBM WXS blood_normal 7316UP-2058-1105217 d9f92625-c0ca-4040-bdda-9dfdbb0d898c_wxs_gdc_realn.bam 38198004026 BAM harmonized CPTAC3 2dd56dbe-e71c-40cd-8c48-c799ef53aa66 50b9bba59f2900472573d46f720908e0 {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal"} -C827913.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2527-1105195 7316UP-2527-1105195.WholeExome.RP-1303.bam 24327000092 BAM aligned CPTAC3 53703239-f5a5-411e-a5ce-e239614380ce 57fb3d0d8e8383f562a5d722be746910 {"aliquot_tag": "ALQ_717b0b85", "gdc_sample_type": "Recurrent Tumor"} -C827913.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2527-1105195 8454ea62-6eaf-4365-9615-865f92181d00_wxs_gdc_realn.bam 32879863913 BAM harmonized CPTAC3 5b5e4d0b-4639-4fc2-8fdc-4c72efdd3b52 6a5aebddb43c876b93ff42d8ddf30732 {"aliquot_tag": "ALQ_717b0b85", "gdc_sample_type": "Recurrent Tumor"} -C827913.WXS.T C827913 GBM WXS tumor 7316UP-2058 7316UP-2058.WholeExome.RP-1303.bam 23498711738 BAM aligned CPTAC3 25e176fc-33df-4190-85fd-515ccfde7a96 2dcda56718006e351e610e43408386f0 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor"} -C827913.WXS.T.hg38 C827913 GBM WXS tumor 7316UP-2058 04ca4248-176f-4eda-89af-30230af7817d_wxs_gdc_realn.bam 31571237792 BAM harmonized CPTAC3 295d757c-a37e-49f5-9d26-65dff2dbbf13 c13745f2971101900b58802e5e91278b {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor"} -C846363.DUP_51dcc4a3.MethArray.Green.T C846363 GBM Methylation_Array tumor 7316UP-2100 205555380097_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35b93fcc-0db4-42fe-ae51-9b32bc6ae301 e36cedc96fdb37c5c6e0e73f95fe7c26 {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C846363.DUP_51dcc4a3.MethArray.Red.T C846363 GBM Methylation_Array tumor 7316UP-2100 205555380097_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 cadfb4ac-bc7a-4031-a17f-5c472255c296 3192c6758d68302e6c24de278757d65e {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C846363.DUP_51dcc4a3.WGS.T C846363 GBM WGS tumor 7316UP-2100 7316UP-2100.WholeGenome.RP-2158.bam 52394539987 BAM aligned CPTAC3 a94539e9-b4fb-4d53-b3a5-9bbede2615ff b1fd2ab0b4b6f62482e46532b56ca23f {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C846363.DUP_51dcc4a3.WGS.T.hg38 C846363 GBM WGS tumor 7316UP-2100 9dd34d93-e75b-4bc5-b49a-b095ba8daf3e_wgs_gdc_realn.bam 156855734828 BAM harmonized CPTAC3 f5321ae8-799c-4684-9c96-c41090f687d0 d5d75a4b88b098a6468ab0d6a402b5f0 {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C846363.DUP_51dcc4a3.WXS.T C846363 GBM WXS tumor 7316UP-2100 7316UP-2100.WholeExome.RP-1303.bam 35056319324 BAM aligned CPTAC3 12336b79-920e-441d-b2cb-de3f75f31fdd 1e7f2f490f374c9e9693c1ea22ce3d1c {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C846363.DUP_51dcc4a3.WXS.T.hg38 C846363 GBM WXS tumor 7316UP-2100 9dd34d93-e75b-4bc5-b49a-b095ba8daf3e_wxs_gdc_realn.bam 47361689745 BAM harmonized CPTAC3 83a989e8-836e-42b2-a240-f87f0858d189 aba7b19465de752e29e3ac56cf490885 {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor"} -C846363.DUP_a3686b92.MethArray.Green.R C846363 GBM Methylation_Array recurrent_tumor 7316UP-2843 205828590002_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 92f2414a-b6c1-41fe-874d-1ac6b51d3438 837f6503ca67b082eea484065e5615fa {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C846363.DUP_a3686b92.MethArray.Red.R C846363 GBM Methylation_Array recurrent_tumor 7316UP-2843 205828590002_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 ed169a03-fe11-4a60-ad81-dc345c430957 5318857f34c3a46b97a06677a86994a6 {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C846363.DUP_a3686b92.WGS.R C846363 GBM WGS recurrent_tumor 7316UP-2843 7316UP-2843.WholeGenome.RP-2158.bam 50765217165 BAM aligned CPTAC3 e7fc300f-d2ee-4eea-ab56-ddfb38150ba5 6c8994fe35d097a49c2a58ee2f9721ba {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C846363.DUP_a3686b92.WGS.R.hg38 C846363 GBM WGS recurrent_tumor 7316UP-2843 d879e30f-9892-4e5e-aafb-30cfe792f307_wgs_gdc_realn.bam 152173646997 BAM harmonized CPTAC3 27d4f02b-2288-42fb-98fb-020481d1a25f 993440c2ab0109581dcfe0c2653d80bc {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C846363.DUP_a3686b92.WXS.R C846363 GBM WXS recurrent_tumor 7316UP-2843 7316UP-2843.WholeExome.RP-1303.bam 33943432437 BAM aligned CPTAC3 31af42c6-e11c-49c5-ab77-dd8dd863bdcc 4b7a30c10f231ec886e6de47edd91a3a {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C846363.DUP_a3686b92.WXS.R.hg38 C846363 GBM WXS recurrent_tumor 7316UP-2843 d879e30f-9892-4e5e-aafb-30cfe792f307_wxs_gdc_realn.bam 46267651279 BAM harmonized CPTAC3 6fa6f528-cbe2-436f-8ae6-0e2c6fda665e 47b0f765b9f5a022864a1e51e0d86690 {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor"} -C846363.miRNA-Seq.R.hg38 C846363 GBM miRNA-Seq recurrent_tumor 7316UP-2843-1104781 6b9a74ef-7985-4b9c-b9ef-b9c04336797a_mirnaseq_gdc_realn.bam 363780993 BAM harmonized CPTAC3 f8bc6740-78b9-454f-bf61-36bb005d2b4f 247d15d262568def382dab4672c56014 {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor"} -C846363.miRNA-Seq.S10_L002_R1.R C846363 GBM miRNA-Seq recurrent_tumor 7316UP-2843-1104781 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L002_R1_001.unaln.bam 324967490 BAM S10_L002_R1 unaligned CPTAC3 26a84bda-5a37-4951-8a78-f77b7babb8da cb2ba09a4a8a243c4c12568701bb4d29 {"aliquot_tag": "ALQ_485a8946", "sample": "S10", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C846363.miRNA-Seq.S17_L001_R1.T C846363 GBM miRNA-Seq tumor 7316UP-2100-1104756 210817_UNC31-K00269_0302_AHLCTHBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 206124662 BAM S17_L001_R1 unaligned CPTAC3 2178becd-560c-4622-a785-7e4cc3f4f170 240fc2203bff324b9826013bfceb2c87 {"aliquot_tag": "ALQ_28bbc092", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C846363.miRNA-Seq.T.hg38 C846363 GBM miRNA-Seq tumor 7316UP-2100-1104756 50823f6f-290b-40cd-abda-b32f1b01a411_mirnaseq_gdc_realn.bam 241255644 BAM harmonized CPTAC3 e485b3c8-2d9d-4bf2-95ae-42c6b8cd1bdc f6a512354ea10d2ad63b865a7171493f {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor"} -C846363.RNA-Seq.chimeric.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.chimeric.gdc_realn.bam 98350894 BAM chimeric harmonized CPTAC3 99393235-61e6-4aa4-bb28-5d13771fd425 4566aec83559d0e7a8222794e054aff5 {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor"} -C846363.RNA-Seq.chimeric.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.chimeric.gdc_realn.bam 91119681 BAM chimeric harmonized CPTAC3 f99b08f6-acf4-4354-8ac7-1cebb0d8f95a f86cde1bc330198725cef5f9f4c21a82 {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor"} -C846363.RNA-Seq.genomic.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.genomic.gdc_realn.bam 8713657595 BAM genomic harmonized CPTAC3 ca8264d0-25c2-409e-b8ea-59f81acace26 c49c629716b727caa3e2af34f824317c {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor"} -C846363.RNA-Seq.genomic.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.genomic.gdc_realn.bam 7913953929 BAM genomic harmonized CPTAC3 36b7e9af-4115-4929-84b9-4a1fc44144bf 439d9f75e85bb8d939c38354c7f7300f {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor"} -C846363.RNA-Seq.S17_L005_R1.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R1_001.fastq.gz 3998179847 FASTQ S17_L005_R1 unaligned CPTAC3 ed500025-1eaf-4dde-8174-8803c579bb73 8631c4f69148ceb691f1273b8bfe69b7 {"aliquot_tag": "ALQ_485a8946", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor"} -C846363.RNA-Seq.S17_L005_R2.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R2_001.fastq.gz 4319818318 FASTQ S17_L005_R2 unaligned CPTAC3 f3c87ab0-01ca-4b90-8c82-bd999d775e65 070bd09e55b4e5f039cdabb69404ea58 {"aliquot_tag": "ALQ_485a8946", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor"} -C846363.RNA-Seq.S3_L001_R1.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R1_001.fastq.gz 3798490040 FASTQ S3_L001_R1 unaligned CPTAC3 05606bfc-9000-4aa7-a4d1-694fc9ad6410 2534e9e52e34bae5f5e46e835aa08896 {"aliquot_tag": "ALQ_28bbc092", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor"} -C846363.RNA-Seq.S3_L001_R2.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R2_001.fastq.gz 4184403140 FASTQ S3_L001_R2 unaligned CPTAC3 347ecdcb-c3a6-4292-9e5c-cf7f6e0c58ca cade5e883571d9a24519dc92a3cb5d0b {"aliquot_tag": "ALQ_28bbc092", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor"} -C846363.RNA-Seq.transcriptome.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.transcriptome.gdc_realn.bam 14593630517 BAM transcriptome harmonized CPTAC3 8a16d438-af31-4412-abb1-edf3892531db b1d8d9f216a64dba0ce32e4525485599 {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor"} -C846363.RNA-Seq.transcriptome.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.transcriptome.gdc_realn.bam 17800881750 BAM transcriptome harmonized CPTAC3 de568fae-4c3e-4133-b1a3-f85ead385635 7356bc5bcd574372727e2bbe6625a67a {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor"} -C846363.WGS.N C846363 GBM WGS blood_normal 7316UP-2100-1105216 7316UP-2100-1105216.WholeGenome.RP-2158.bam 45438721378 BAM aligned CPTAC3 42975547-bcff-41fb-a890-cc0fbe1b30c9 065d5dfc7f7234624c2d3eb7ee4a4647 {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal"} -C846363.WGS.N.hg38 C846363 GBM WGS blood_normal 7316UP-2100-1105216 1c7ec3f4-e1ac-4861-a0b3-7b9590b20b76_wgs_gdc_realn.bam 134274366455 BAM harmonized CPTAC3 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 4833ba43a257ff64f5ab6adf293caba3 {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal"} -C846363.WGS.T C846363 GBM WGS tumor 7316UP-2100-1105219 7316UP-2100-1105219.WholeGenome.RP-2158.bam 51804323984 BAM aligned CPTAC3 7fdcdd36-e083-470f-a770-6a005da83f68 682c7d43a1a8f2b5f53bf38d22eefcbd {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor"} -C846363.WGS.T.hg38 C846363 GBM WGS tumor 7316UP-2100-1105219 d895aa40-8999-4f0b-be15-694f1bdb380c_wgs_gdc_realn.bam 148362374967 BAM harmonized CPTAC3 0189a0e1-989c-4c4f-bac9-347ea63ce6d9 d6b84549d3efdff96a5823072f8c46b7 {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor"} -C846363.WXS.N C846363 GBM WXS blood_normal 7316UP-2100-1105216 7316UP-2100-1105216.WholeExome.RP-1303.bam 29207285501 BAM aligned CPTAC3 bd45cd04-f40e-405e-9bc2-1c42e8614cb1 4b81d4fab0d67c8ccd13a92280b158a9 {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal"} -C846363.WXS.N.hg38 C846363 GBM WXS blood_normal 7316UP-2100-1105216 1c7ec3f4-e1ac-4861-a0b3-7b9590b20b76_wxs_gdc_realn.bam 40366873272 BAM harmonized CPTAC3 1a0e8e5c-708a-45fd-853f-e8d2ceed7813 720a491d2c097a57f7f8a5693e4b72fe {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal"} -C846363.WXS.R C846363 GBM WXS recurrent_tumor 7316UP-2843-1105244 7316UP-2843-1105244.WholeExome.RP-1303.bam 23343495743 BAM aligned CPTAC3 b8590e83-d959-46b0-90aa-88bc644962fc f99e05802a978632cdb7d8a20b23ba84 {"aliquot_tag": "ALQ_2af2974b", "gdc_sample_type": "Recurrent Tumor"} -C846363.WXS.R.hg38 C846363 GBM WXS recurrent_tumor 7316UP-2843-1105244 c26c57b3-b748-4436-bc41-50eb6f46fcc2_wxs_gdc_realn.bam 31313947714 BAM harmonized CPTAC3 7137ecfb-10ec-467f-9073-534ae0f3b688 66737f31a1626d567422b78d8a6ad6e5 {"aliquot_tag": "ALQ_2af2974b", "gdc_sample_type": "Recurrent Tumor"} -C846363.WXS.T C846363 GBM WXS tumor 7316UP-2100-1105219 7316UP-2100-1105219.WholeExome.RP-1303.bam 15815239997 BAM aligned CPTAC3 57b43f3a-59cf-4057-9240-5c0965ff2f09 caa81a2c6b3a25623daaf3b4e3918b00 {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor"} -C846363.WXS.T.hg38 C846363 GBM WXS tumor 7316UP-2100-1105219 d895aa40-8999-4f0b-be15-694f1bdb380c_wxs_gdc_realn.bam 22124861490 BAM harmonized CPTAC3 e3e1eeb8-e749-4520-83e2-3ae1091a7207 464cfbd7492f2719709a8776d6c340ad {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor"} -GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 59a32933-dcc8-4347-b3ea-ac4f0b41a1ed_mirnaseq_gdc_realn.bam 186345250 BAM harmonized CPTAC3 8d438eb7-7ede-4df3-9f1e-47063e2c0428 5297814bbb233db6b16068da94dcac73 {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.S46_L004_R1.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTAGAG_S46_L004_R1_001.unaln.bam 164935939 BAM S46_L004_R1 unaligned CPTAC3 b04dd504-b320-4b74-8b55-245d542a1591 99204b51c7bca4b47061d2e1b9ab03a7 {"aliquot_tag": "ALQ_dbd9aa06", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.chimeric.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.chimeric.gdc_realn.bam 59007709 BAM chimeric harmonized CPTAC3 391ac2fa-396b-4067-86fa-fdb010f0f8d5 8d99f60cef1dc655309732b42f26461f {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.genomic.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.genomic.gdc_realn.bam 8042385019 BAM genomic harmonized CPTAC3 cabfadbd-5245-4403-8315-10e6982d9c8e 001e5954f3d632b0259a5a1fdf36a286 {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.S13_L005_R1.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R1_001.fastq.gz 3765743130 FASTQ S13_L005_R1 unaligned CPTAC3 bc06c745-5e1d-4360-98b5-5932622e5ad6 f8bdda1f1e5572a24b4ee3ce7b40fcd2 {"aliquot_tag": "ALQ_dbd9aa06", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.S13_L005_R2.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R2_001.fastq.gz 4079829284 FASTQ S13_L005_R2 unaligned CPTAC3 0c2c947c-f8b3-4cf4-aa09-c4a484c21efc 293130ebc12c8588458aa3f0f66623e9 {"aliquot_tag": "ALQ_dbd9aa06", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.transcriptome.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.transcriptome.gdc_realn.bam 10109767872 BAM transcriptome harmonized CPTAC3 0a27c83b-fa20-4694-92d9-07edc67cce35 32d6f2eafa0146bd48ff813ac59b89da {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 a1dfef8b-8633-4127-8bf3-ffb0038d94c3_mirnaseq_gdc_realn.bam 255528989 BAM harmonized CPTAC3 043612f4-af3a-4875-9e05-73a0cca6e184 3e850f62007829c7133df2f20422b51c {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.S5_L004_R1.A GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGGCC_S5_L004_R1_001.unaln.bam 232944125 BAM S5_L004_R1 unaligned CPTAC3 9215c9ae-265c-4863-b79c-2cefb9211a3b c4a772d8bfe747d235d6b36ef231b54f {"aliquot_tag": "ALQ_505dbad9", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.chimeric.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.chimeric.gdc_realn.bam 66511632 BAM chimeric harmonized CPTAC3 65568bf2-5e87-4828-8e9c-468db769f3e6 b0ac031872ef8c6f5adae5f2c7068798 {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.genomic.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.genomic.gdc_realn.bam 7999492501 BAM genomic harmonized CPTAC3 aade6614-661a-4070-87ef-938205656ddb cdecada683893afcab3540dfa0701a06 {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.S14_L004_R1.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R1_001.fastq.gz 3585455144 FASTQ S14_L004_R1 unaligned CPTAC3 eaee871f-6c1c-4b68-ae45-c02b26e03112 e43d9aa30db9773c7ec59aa287f8987c {"aliquot_tag": "ALQ_505dbad9", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.S14_L004_R2.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R2_001.fastq.gz 3823964368 FASTQ S14_L004_R2 unaligned CPTAC3 ac5d5942-5109-443b-a92f-a2cc70ea4764 03b608c12f6090518048609ae436d54a {"aliquot_tag": "ALQ_505dbad9", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.transcriptome.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.transcriptome.gdc_realn.bam 12363677026 BAM transcriptome harmonized CPTAC3 75842b27-96ac-4018-b1f3-469c4cc01c5f 17f4e1e58187c93d76a5ddd50f58932e {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.chimeric.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.chimeric.gdc_realn.bam 42694127 BAM chimeric harmonized CPTAC3 530ad5b6-dc87-4324-8628-f3e99b5a3e1d 275c0dc3b6882a09cb12a493aeebd86e {"aliquot_tag": "ALQ_59893dd7", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.genomic.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.genomic.gdc_realn.bam 7209390016 BAM genomic harmonized CPTAC3 03bd5ecf-022b-46b9-bf66-e39566aa5944 fdbd922682763dc88b9408d8a77bd7ef {"aliquot_tag": "ALQ_59893dd7", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.S20_L006_R1.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R1_001.fastq.gz 3415853912 FASTQ S20_L006_R1 unaligned CPTAC3 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0 1142a485efe83ea669c4dc28c77eeae2 {"aliquot_tag": "ALQ_59893dd7", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.S20_L006_R2.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R2_001.fastq.gz 3709398511 FASTQ S20_L006_R2 unaligned CPTAC3 222a2d66-7b96-4170-bf35-7b9c23d8953f 14cbbfc67bde2f79877cd7e8c927d607 {"aliquot_tag": "ALQ_59893dd7", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.transcriptome.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.transcriptome.gdc_realn.bam 8434383621 BAM transcriptome harmonized CPTAC3 a6dddff1-421e-4f4d-a2a9-162d370ce2da f154eb13a3657e23f809d783d9d6e10b {"aliquot_tag": "ALQ_59893dd7", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 fd4e6d5f-3714-4791-9122-7a56650788b5_mirnaseq_gdc_realn.bam 403589976 BAM harmonized CPTAC3 a51bec4b-ffa3-4c69-ac7d-d35fc070a93f 50f6f67ce92a34daa193d2f63f30514c {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.S42_L004_R1.A GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 190813_UNC32-K00270_0196_AH5MCWBBXY_AGTCAA_S42_L004_R1_001.unaln.bam 353147146 BAM S42_L004_R1 unaligned CPTAC3 46fdcb55-7313-4293-981a-ee424abf1681 57cbe3e56107a6921f3f3651e96ba6c4 {"aliquot_tag": "ALQ_1e294707", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.chimeric.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.chimeric.gdc_realn.bam 104086707 BAM chimeric harmonized CPTAC3 43efe9fa-08c0-4002-b79b-5c8fc5703098 ee0849b993110e33df96332fc428f02b {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.genomic.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.genomic.gdc_realn.bam 9804688719 BAM genomic harmonized CPTAC3 45c87aac-c1fa-4852-b50b-e9159328c34d 9671438ae68c85c36c409f7fa98dac34 {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.S17_L006_R1.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R1_001.fastq.gz 4465868783 FASTQ S17_L006_R1 unaligned CPTAC3 ebbf052b-938b-4978-87bb-e203ecd9ea8d e0733607fd2f05ad4932dd4d8cc6f597 {"aliquot_tag": "ALQ_1e294707", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.S17_L006_R2.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R2_001.fastq.gz 4376071746 FASTQ S17_L006_R2 unaligned CPTAC3 5493009c-4e84-42d1-845e-f597e8538bdf aaec4180b35509ed2ed4785de4a4a201 {"aliquot_tag": "ALQ_1e294707", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.transcriptome.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.transcriptome.gdc_realn.bam 10575695024 BAM transcriptome harmonized CPTAC3 865815aa-c9ea-4e3b-addd-cf113af77ac7 21c123a30d80e484dd094d68c0190327 {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 bec258dd-30cd-4908-b5f9-e00bf74e3cb9_mirnaseq_gdc_realn.bam 402752717 BAM harmonized CPTAC3 4ba89b6f-5b90-4449-987b-9ffaf6553cf2 16544569a2c93fbf721ae36eec78a069 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.S41_L004_R1.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 190813_UNC32-K00270_0196_AH5MCWBBXY_CTTGTA_S41_L004_R1_001.unaln.bam 362426253 BAM S41_L004_R1 unaligned CPTAC3 206ee6f5-9a67-413f-bf39-6973090d9318 a32c794f0004c67d13834a8a4ec2d67a {"aliquot_tag": "ALQ_23496eb7", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.chimeric.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.chimeric.gdc_realn.bam 157294935 BAM chimeric harmonized CPTAC3 0cb12c33-b3f1-4f16-926b-0cccd6f1a0db 05d132a3c99d4b6a27e5c9278c87df48 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.genomic.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.genomic.gdc_realn.bam 11745035991 BAM genomic harmonized CPTAC3 3c625917-2193-428f-b5fe-55ed7673ed57 b905abf4116596eef7bcb486ff946db1 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.S18_L006_R1.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R1_001.fastq.gz 5085066252 FASTQ S18_L006_R1 unaligned CPTAC3 ae85444e-59ad-43b5-bab7-4c138b7291af ad92a12cdcb9075829349f6c7ae37196 {"aliquot_tag": "ALQ_23496eb7", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.S18_L006_R2.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R2_001.fastq.gz 5392721495 FASTQ S18_L006_R2 unaligned CPTAC3 41592dab-9730-40dc-8c7a-1c164445e2fc c83c21e32099a08875aa8a1c13fee84e {"aliquot_tag": "ALQ_23496eb7", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.transcriptome.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.transcriptome.gdc_realn.bam 10901357061 BAM transcriptome harmonized CPTAC3 76fa07ec-8149-46d7-b1d7-5c97f55d6d4f 00d0da525632444e34fc0205b99fad69 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 6d2665ea-80dc-47cc-86ee-0689f34bacac_mirnaseq_gdc_realn.bam 241146961 BAM harmonized CPTAC3 73a5dc2c-3604-4360-a23c-c417a43b8f52 e891e693b2cbc468fb1d0097d16e7c20 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.S3_L004_R1.A GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTCCGC_S3_L004_R1_001.unaln.bam 216076917 BAM S3_L004_R1 unaligned CPTAC3 f8569758-ef9d-4d7c-bc10-2b2e8278dc5e bd6f1b1e46ab00c5a272389f9b35c476 {"aliquot_tag": "ALQ_2a9de9b9", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.chimeric.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.chimeric.gdc_realn.bam 66673576 BAM chimeric harmonized CPTAC3 375818fa-9ca9-45d6-a320-85dd98be6fc0 25baa2227f406ec047f92f5bee8913d0 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.genomic.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.genomic.gdc_realn.bam 9466463129 BAM genomic harmonized CPTAC3 52ac11b4-a30d-41af-a451-98d8fb381068 68b4578e14c4adb2a3fc0ea945735710 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.S16_L005_R1.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R1_001.fastq.gz 4343747954 FASTQ S16_L005_R1 unaligned CPTAC3 991c731a-f70e-46c6-82f8-fe5b1c4f2014 4e46a4a777ab0eaaf2339dd94a0ac815 {"aliquot_tag": "ALQ_2a9de9b9", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.S16_L005_R2.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R2_001.fastq.gz 4681867735 FASTQ S16_L005_R2 unaligned CPTAC3 169530bc-e43c-40b8-938d-55fc0c5afbb2 191d575dd05a76e0f293cdb4474a4c83 {"aliquot_tag": "ALQ_2a9de9b9", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.transcriptome.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.transcriptome.gdc_realn.bam 10306678253 BAM transcriptome harmonized CPTAC3 3b0ada5c-2071-4b17-91cf-0062a7bf1e81 8f0e68f2f86e1b51c6df72abbe958936 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 9b53c058-3e78-447b-bf8a-3ebd67b36176_mirnaseq_gdc_realn.bam 261541459 BAM harmonized CPTAC3 4a26be34-750c-41cf-ab2e-db70e3b1343f 93f7413eb052a2026331584c8ce2b968 {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.S44_L004_R1.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L004_R1_001.unaln.bam 222201696 BAM S44_L004_R1 unaligned CPTAC3 88011b61-b19a-4364-92dc-6bc5016b3431 4154040b94c7f71641e1e34aeb3df546 {"aliquot_tag": "ALQ_64e91467", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.chimeric.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.chimeric.gdc_realn.bam 44368182 BAM chimeric harmonized CPTAC3 caf4913a-c5a1-4c4a-9075-2513d1399728 c1c3d86d5e32c6c16482fac57a53e43a {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.genomic.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.genomic.gdc_realn.bam 6966540778 BAM genomic harmonized CPTAC3 d8688d61-cba6-44a2-a06e-9213e8ab7775 acc22dca3fad8ea277759185b1b9bbda {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.S15_L005_R1.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R1_001.fastq.gz 3264885576 FASTQ S15_L005_R1 unaligned CPTAC3 440b3a6f-55b1-4a6e-b60f-875dff4a1648 9096833e0ea58b49e95ffd713f9cc04c {"aliquot_tag": "ALQ_64e91467", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.S15_L005_R2.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R2_001.fastq.gz 3488807105 FASTQ S15_L005_R2 unaligned CPTAC3 f64b4605-5731-4f25-b62a-c0bb5e52402e e3f6403767708b7208df0fed4d20452a {"aliquot_tag": "ALQ_64e91467", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.transcriptome.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.transcriptome.gdc_realn.bam 7406868324 BAM transcriptome harmonized CPTAC3 fc3db4af-b992-4f88-8592-e98b37feded8 c699844f816f139a144d16f68bf168a7 {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 34c82ef7-3cfc-4161-89b4-9b20f770af83_mirnaseq_gdc_realn.bam 320278768 BAM harmonized CPTAC3 e9c05438-5dc3-4a20-8256-2086a96ef3e6 08b53e7ff898f19df423240b3614f853 {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.S143_L008_R1.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 190828_UNC32-K00270_0200_BH7GVJBBXY_GTTTCG_S143_L008_R1_001.unaln.bam 283348378 BAM S143_L008_R1 unaligned CPTAC3 a47b8637-33a3-4e49-8897-a5b08fec15de b0c874e7cb87ae81397803412e1d0c0a {"aliquot_tag": "ALQ_6d3d9369", "sample": "S143", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.chimeric.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.chimeric.gdc_realn.bam 69113219 BAM chimeric harmonized CPTAC3 985b268b-bb9e-4164-8e5b-f3d86092c5d6 0cd3bba3f6cec799f1692aadb1780049 {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.genomic.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.genomic.gdc_realn.bam 8913744384 BAM genomic harmonized CPTAC3 7eb17d7f-4774-4f4d-ab20-29f6b93aff6e 2022f1892b6a1686639155ba3034bb4c {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.S15_L004_R1.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R1_001.fastq.gz 4306549496 FASTQ S15_L004_R1 unaligned CPTAC3 cdf168a3-2eb6-4368-bf54-f23950626b10 b747d1bfc7eae3c1a2398a28dd15b788 {"aliquot_tag": "ALQ_6d3d9369", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.S15_L004_R2.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R2_001.fastq.gz 4425085797 FASTQ S15_L004_R2 unaligned CPTAC3 aec464aa-f28d-407d-a76f-869a3121d472 d079a6542e3381afde42c39e4e43dacf {"aliquot_tag": "ALQ_6d3d9369", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.transcriptome.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.transcriptome.gdc_realn.bam 18132165211 BAM transcriptome harmonized CPTAC3 12e50a13-341d-4b55-8407-9e6b3531c2af 9c12b6a62f1785b8647671617a17e8e0 {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 5be949d3-314a-4699-8cfc-c62cbbc00736_mirnaseq_gdc_realn.bam 421417241 BAM harmonized CPTAC3 fcbf1822-3a29-4f5f-b6f0-0bcb37d8b165 82ec6745b18d8b671eb1f25d5a08c81c {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.S4_L004_R1.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGAAA_S4_L004_R1_001.unaln.bam 352802300 BAM S4_L004_R1 unaligned CPTAC3 14842e9b-1fa3-423c-9e35-8a3ab1163b20 c72b90870ab495f5969953ea1103d188 {"aliquot_tag": "ALQ_17fdc009", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.chimeric.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.chimeric.gdc_realn.bam 92430606 BAM chimeric harmonized CPTAC3 1f26118d-f64a-42dd-b9c1-df63307eb0ef 9357f486ac5631b62a87f88ad7a65f97 {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.genomic.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.genomic.gdc_realn.bam 10268900215 BAM genomic harmonized CPTAC3 245574d1-0a50-4757-918d-e7bb7975c8db e49d4383ac60be77bce84d837e5c7f23 {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.S13_L004_R1.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R1_001.fastq.gz 4854888143 FASTQ S13_L004_R1 unaligned CPTAC3 682b4036-c822-40d0-9662-2c18077f8493 eb02f8ffcd30f1698dfff8249c6f1e4e {"aliquot_tag": "ALQ_17fdc009", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.S13_L004_R2.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R2_001.fastq.gz 5090597822 FASTQ S13_L004_R2 unaligned CPTAC3 43e9394a-420b-4a99-907a-2f0a293a9f1c 18d6aeee1c0f9ee6f99474eb9695c62b {"aliquot_tag": "ALQ_17fdc009", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.transcriptome.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.transcriptome.gdc_realn.bam 19120343598 BAM transcriptome harmonized CPTAC3 8f6a015f-cec5-44a4-b75d-647c3776794f 993d91df8b613f317a1bd48eeaaa5c40 {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal"} -PT-Q2AG.RNA-Seq.chimeric.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.chimeric.gdc_realn.bam 520499169 BAM chimeric harmonized CPTAC3 1aeffca0-c5c1-4fdf-8fd9-6e1fd5e27c80 0403e2a1e7493091610853067e8ffd0e {"aliquot_tag": "ALQ_879c0898", "gdc_sample_type": "Solid Tissue Normal"} -PT-Q2AG.RNA-Seq.genomic.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.genomic.gdc_realn.bam 13387407531 BAM genomic harmonized CPTAC3 bee133f1-204b-43e5-a0a4-cc48750a983a f4fdaaf7cb394d13133753db100982c5 {"aliquot_tag": "ALQ_879c0898", "gdc_sample_type": "Solid Tissue Normal"} -PT-Q2AG.RNA-Seq.S8_L003_R1.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R1_001.fastq.gz 5898206072 FASTQ S8_L003_R1 unaligned CPTAC3 624298d8-62b5-48e2-8dbb-114aa81b99b3 daa12bbc628c67bbe970376515961d18 {"aliquot_tag": "ALQ_879c0898", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal"} -PT-Q2AG.RNA-Seq.S8_L003_R2.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R2_001.fastq.gz 6587430382 FASTQ S8_L003_R2 unaligned CPTAC3 0fce5ae6-0a02-4802-8167-dd6405540e55 ad0d73b84334fddc373c6386f45998d8 {"aliquot_tag": "ALQ_879c0898", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal"} -PT-Q2AG.RNA-Seq.transcriptome.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.transcriptome.gdc_realn.bam 24323053743 BAM transcriptome harmonized CPTAC3 53b425a2-f98f-4a42-89bb-a9d1aa8d96c6 4e4bb8671642eaee0296da2766eaa009 {"aliquot_tag": "ALQ_879c0898", "gdc_sample_type": "Solid Tissue Normal"} +11LU013.MethArray.Green.T 11LU013 LUAD Methylation_Array tumor CPT0053040010 202176300111_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2ddd5fb8-54c2-4423-8e3c-51aa0fab87fe d9307aaeff5e7e26e023bfa8a79f94be {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.MethArray.Red.T 11LU013 LUAD Methylation_Array tumor CPT0053040010 202176300111_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 ece74f1e-055e-4fe0-8f5c-f971f331a103 18000d1b494085be685f110d3c37843a {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.miRNA-Seq.S28_L007_R1.T 11LU013 LUAD miRNA-Seq tumor CPT0053040007 181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L007_R1_001.unaln.bam 200267355 BAM S28_L007_R1 submitted_unaligned CPTAC3 422fd8f3-6a86-4ea8-a958-11eee7f05d06 7c4c68927aa7bb724ee4a4a301565191 {"aliquot_tag": "ALQ_a2b7857", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.miRNA-Seq.T.hg38 11LU013 LUAD miRNA-Seq tumor CPT0053040007 c99f30c5-cdd0-47b7-be22-b271c6c02124_mirnaseq_gdc_realn.bam 219234487 BAM harmonized CPTAC3 5cfe8c2c-6be5-4091-8997-3e0faf62ed83 4771396f8ed6db49384bbff636cc42d1 {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.RNA-Seq.chimeric.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.chimeric.gdc_realn.bam 254406270 BAM chimeric harmonized CPTAC3 55246224-11c0-415d-bd2f-06fd7cb53a16 f8a8550f7963d18257fdb8f5794976e7 {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.RNA-Seq.genomic.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.genomic.gdc_realn.bam 8729271900 BAM genomic harmonized CPTAC3 f4b41880-7801-486f-add7-651abe8201fb e931fc8cda5a76149e1649e7dbd57915 {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.RNA-Seq.S20_L005_R1.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R1_001.fastq.gz 4303659823 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 c01167e5-f61b-4816-8910-97d5f225122d 02f9a9654c38233f5db3e233042b4a9a {"aliquot_tag": "ALQ_a2b7857", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.RNA-Seq.S20_L005_R2.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R2_001.fastq.gz 4658332238 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 94a49466-5947-4dce-b1cb-616d50b84046 2a1ce1585265097c8591930b4431ec8f {"aliquot_tag": "ALQ_a2b7857", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.RNA-Seq.transcriptome.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.transcriptome.gdc_realn.bam 11774516982 BAM transcriptome harmonized CPTAC3 273e17dd-68b8-4930-8946-52b721114171 0c90eff0db42aa32269980d45822ba0a {"aliquot_tag": "ALQ_a2b7857", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.WGS.N 11LU013 LUAD WGS blood_normal CPT0040210002 CPT0040210002.WholeGenome.RP-1303.bam 63400815626 BAM submitted_aligned CPTAC3 44a17830-c27e-4c78-8754-0c0aa33ac33a 9f0120b2113fd9041bca569fe2462a87 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU013.WGS.N.hg38 11LU013 LUAD WGS blood_normal CPT0040210002 e04e7004-0cc8-42d0-9276-a290b24940ce_gdc_realn.bam 96565337883 BAM harmonized CPTAC3 89783e46-3269-42ad-8b4a-6b3de3fd47dc e71dbb924769e7145f4c80760b953d05 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU013.WGS.T 11LU013 LUAD WGS tumor CPT0053040010 CPT0053040010.WholeGenome.RP-1303.bam 87673499819 BAM submitted_aligned CPTAC3 5577f58b-1223-46da-8329-17df4700506c 27f2bb4e158490facee355fb469e4adf {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.WGS.T.hg38 11LU013 LUAD WGS tumor CPT0053040010 3e34414d-9614-4ad3-91e6-877b3758b5a1_gdc_realn.bam 132313633595 BAM harmonized CPTAC3 4b44af23-2fbe-4ff2-8f24-44080b6ec1d3 6ccb586d58ec437dc748cb423d8b07a0 {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.WXS.N 11LU013 LUAD WXS blood_normal CPT0040210002 CPT0040210002.WholeExome.RP-1303.bam 32888241174 BAM submitted_aligned CPTAC3 29f82e93-1da2-4c11-9cdb-5ee1aaf05549 0dcb3aa42e3fc50136ff87a763478695 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU013.WXS.N.hg38 11LU013 LUAD WXS blood_normal CPT0040210002 e04e7004-0cc8-42d0-9276-a290b24940ce_gdc_realn.bam 45154785185 BAM harmonized CPTAC3 91f48c07-d1a5-479b-9abe-06ec6218a849 8bcc571c9898af4f03fb042e2cf8c4d7 {"aliquot_tag": "ALQ_22bb8a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU013.WXS.T 11LU013 LUAD WXS tumor CPT0053040010 CPT0053040010.WholeExome.RP-1303.bam 36146820337 BAM submitted_aligned CPTAC3 8f7864c6-eaaa-48b7-8aac-3c5d2dbe3ccb 78efa6cfe0e9d60c25b8ec5996e0913a {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU013.WXS.T.hg38 11LU013 LUAD WXS tumor CPT0053040010 3e34414d-9614-4ad3-91e6-877b3758b5a1_gdc_realn.bam 49316216018 BAM harmonized CPTAC3 54a37bf4-20a9-4e4d-ae09-567a67e5ff3d 68a83c8fbf14b838ed8a726664952425 {"aliquot_tag": "ALQ_8d54dcb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.MethArray.Green.T 11LU016 LUAD Methylation_Array tumor CPT0052940010 202176300039_R03C01_Grn.idat 13676225 IDAT Green NA CPTAC3 ed984227-cba5-4d23-b3ae-5117d76c2c1c 93d77a11234a7a713f367a566ee6d1d3 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.MethArray.Red.T 11LU016 LUAD Methylation_Array tumor CPT0052940010 202176300039_R03C01_Red.idat 13676225 IDAT Red NA CPTAC3 d0c30a2b-fbfc-4f50-9aa2-bece1983c561 176dd33d90606344bc5e65df98620241 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.miRNA-Seq.S11_L006_R1.T 11LU016 LUAD miRNA-Seq tumor CPT0052940014 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L006_R1_001.unaln.bam 243245867 BAM S11_L006_R1 submitted_unaligned CPTAC3 d06b0f25-a5c1-4619-ada7-0e0ce91dc057 cf1f077583b09baa2ddf3a7f16ca3666 {"aliquot_tag": "ALQ_b4142d0", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.miRNA-Seq.T.hg38 11LU016 LUAD miRNA-Seq tumor CPT0052940014 fafce980-56e2-410d-b7ba-90dc0cba86d8_mirnaseq_gdc_realn.bam 266210538 BAM harmonized CPTAC3 ec8e6421-9f91-4a0b-a7cc-48ab55014c77 35898fe85e397f065fad089be49762e3 {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.RNA-Seq.chimeric.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.chimeric.gdc_realn.bam 59702054 BAM chimeric harmonized CPTAC3 d77e1d7a-c044-4132-aff0-bc40609cc581 7df7eb745b8ce3b7936ff553f0c7999f {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.RNA-Seq.genomic.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.genomic.gdc_realn.bam 9227315114 BAM genomic harmonized CPTAC3 6eee333f-eb7f-41a9-96e2-e090b6ad2a9c 69d3a869a930406f4d08e8d374c26c57 {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.RNA-Seq.S21_L006_R1.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 4031595548 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 4c8f74a2-3b16-46cc-b859-a9ecf7b9a621 3b423efa3ffcfc25a5dfc57525867af6 {"aliquot_tag": "ALQ_b4142d0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.RNA-Seq.S21_L006_R2.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 4399145149 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 7dbc18b1-12d7-4ba2-a87a-45c1e24d1e87 d52c47587cceea6adaf26d20ffdde53d {"aliquot_tag": "ALQ_b4142d0", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.RNA-Seq.transcriptome.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.transcriptome.gdc_realn.bam 10083402963 BAM transcriptome harmonized CPTAC3 9b37937d-4cf6-456b-9f8c-010a4862304a e62715c19874557102307db1c18e7c9b {"aliquot_tag": "ALQ_b4142d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.WGS.N 11LU016 LUAD WGS blood_normal CPT0037120002 CPT0037120002.WholeGenome.RP-1303.bam 65076536281 BAM submitted_aligned CPTAC3 aefcda0c-0224-4091-a489-f65fd1bb84a7 09b64fbeb7288371e7a90e1f590997f7 {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU016.WGS.N.hg38 11LU016 LUAD WGS blood_normal CPT0037120002 b200ba63-b414-4169-8712-eb726c784613_gdc_realn.bam 96485032091 BAM harmonized CPTAC3 e7d08220-93aa-4182-a19f-6ea9267b6ce8 35bd20a9b59b84b78df97b776d71ec69 {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU016.WGS.T 11LU016 LUAD WGS tumor CPT0052940010 CPT0052940010.WholeGenome.RP-1303.bam 86352420425 BAM submitted_aligned CPTAC3 60f4cd71-0a61-4c5b-931b-bdf79369b5ac ceaf4bb97b4639b41df27e193a905b9b {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.WGS.T.hg38 11LU016 LUAD WGS tumor CPT0052940010 e99345ff-01f8-4063-b178-d8e86181288c_gdc_realn.bam 127893888207 BAM harmonized CPTAC3 81eb34f5-f0af-4a2e-a4f4-4f5bcf07a91b 5b997ca99a9718f6d694b9e6e9cb4a56 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.WXS.N 11LU016 LUAD WXS blood_normal CPT0037120002 CPT0037120002.WholeExome.RP-1303.bam 26680468195 BAM submitted_aligned CPTAC3 099b3bdc-3df6-4ec4-93ac-6287a67734bc 2873a1b3f857354457a8b6a60568f6ad {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU016.WXS.N.hg38 11LU016 LUAD WXS blood_normal CPT0037120002 b200ba63-b414-4169-8712-eb726c784613_gdc_realn.bam 36299521229 BAM harmonized CPTAC3 4b4f7205-7616-43b0-a170-3240eadf0681 59fe7bf9cfae8372ba7dfcbbb6adb5a1 {"aliquot_tag": "ALQ_c7d8749", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU016.WXS.T 11LU016 LUAD WXS tumor CPT0052940010 CPT0052940010.WholeExome.RP-1303.bam 25728140319 BAM submitted_aligned CPTAC3 fcc8d0e0-5ddb-4c2f-806b-9ff4edfc0283 238fab784318692d8fc7c58b0cb4395f {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU016.WXS.T.hg38 11LU016 LUAD WXS tumor CPT0052940010 e99345ff-01f8-4063-b178-d8e86181288c_gdc_realn.bam 35226439856 BAM harmonized CPTAC3 2bc9c65b-3d97-4f0c-b76e-decfcbd14e77 a17c02bae4b55d97c29e5c253e28c844 {"aliquot_tag": "ALQ_c2c86c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.MethArray.Green.T 11LU022 LUAD Methylation_Array tumor CPT0052170010 202163530120_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a3695058-a2da-4484-9514-615d62043da9 213c042dc65e2cc10c960d868abc30fe {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.MethArray.Red.T 11LU022 LUAD Methylation_Array tumor CPT0052170010 202163530120_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 290b9ac4-6b40-485d-abe5-0f4eb430d139 5fc3a8d51de42bbd4bc75cd27572665a {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.miRNA-Seq.S10_L006_R1.T 11LU022 LUAD miRNA-Seq tumor CPT0052170014 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L006_R1_001.unaln.bam 275659119 BAM S10_L006_R1 submitted_unaligned CPTAC3 396f9bae-72c6-445d-89fb-332a9b023628 458e971e86f11d9ed56a95ec04ff85b5 {"aliquot_tag": "ALQ_a0b2ba6d", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.miRNA-Seq.T.hg38 11LU022 LUAD miRNA-Seq tumor CPT0052170014 aba40a2f-6d06-4f27-88e5-132f94e4b169_mirnaseq_gdc_realn.bam 299307293 BAM harmonized CPTAC3 0a7d4109-2998-480d-8f40-10d3093d63ee dc3709c42057ccc566d941ba49c677d0 {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.RNA-Seq.chimeric.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.chimeric.gdc_realn.bam 46108124 BAM chimeric harmonized CPTAC3 10c840ad-128a-4902-9b06-506ac4d77b25 fb9dc71e6dd6d2d68c7f51165533216e {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.RNA-Seq.genomic.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.genomic.gdc_realn.bam 9052031834 BAM genomic harmonized CPTAC3 0af6d9c6-c205-4b2f-9fd2-949dcd9e9f77 93d0ebe91f162ca62f547779990e16ee {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.RNA-Seq.S22_L006_R1.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4126753330 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 34d25352-c90a-4cf6-b61a-5d2f4666fa52 9971f48e1eef7d42debe3d1e7e54b095 {"aliquot_tag": "ALQ_a0b2ba6d", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.RNA-Seq.S22_L006_R2.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4493136826 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 f0b0ceaf-55a7-4f73-839b-f9ff940eefdc d3b1e90b40bb3a647be0e9bb49002fba {"aliquot_tag": "ALQ_a0b2ba6d", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.RNA-Seq.transcriptome.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.transcriptome.gdc_realn.bam 10587229256 BAM transcriptome harmonized CPTAC3 8677e614-683a-41e8-8486-aea5896632b9 9871b60a3869ba0c8c411b1913d1a0b9 {"aliquot_tag": "ALQ_a0b2ba6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.WGS.N 11LU022 LUAD WGS blood_normal CPT0038140002 CPT0038140002.WholeGenome.RP-1303.bam 63381145020 BAM submitted_aligned CPTAC3 368aff0a-d15f-49bd-b9d1-bb8583f037e7 76532fc386663ff7cc02ee8eeb196ac0 {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU022.WGS.N.hg38 11LU022 LUAD WGS blood_normal CPT0038140002 db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 95326322818 BAM harmonized CPTAC3 43393979-50c9-44e3-b75c-6792b1a20300 f7fd1ed4e5527727e41947713516a6eb {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU022.WGS.T 11LU022 LUAD WGS tumor CPT0052170010 CPT0052170010.WholeGenome.RP-1303.bam 91490629292 BAM submitted_aligned CPTAC3 6929e1e5-5f8f-4bed-adf7-741aeed44f85 f6c0950a08f5514b149da3e17b01b1bd {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.WGS.T.hg38 11LU022 LUAD WGS tumor CPT0052170010 1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 137841436758 BAM harmonized CPTAC3 bf94c671-5d26-4691-836c-1e89eab4adce 4aa75ed11b4382bb3887eb1fa56e518a {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.WXS.N 11LU022 LUAD WXS blood_normal CPT0038140002 CPT0038140002.WholeExome.RP-1303.bam 29473604295 BAM submitted_aligned CPTAC3 e63c4ef2-96d1-4054-9b8e-2b289edcfa5a 209d3a8f4cfa7267ed361511d91ffec1 {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU022.WXS.N.hg38 11LU022 LUAD WXS blood_normal CPT0038140002 db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 40504340932 BAM harmonized CPTAC3 afd56e8e-f82d-4fb1-b019-2b032c763b85 ffaf8a4fa08634b783faef7f89f50435 {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU022.WXS.T 11LU022 LUAD WXS tumor CPT0052170010 CPT0052170010.WholeExome.RP-1303.bam 28330934233 BAM submitted_aligned CPTAC3 c16296d2-2905-4ffd-a2ae-78e633da41b8 7705d783ff3553286142e89c33f813f3 {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU022.WXS.T.hg38 11LU022 LUAD WXS tumor CPT0052170010 1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 38175893642 BAM harmonized CPTAC3 8466e786-5981-421d-ab9a-a6553c5c8285 2e1c2e90519444ded5273a5a969a8407 {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.DUP_2bb40b73.WGS.T 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM submitted_aligned CPTAC3 c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +11LU035.DUP_2bb40b73.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM harmonized CPTAC3 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +11LU035.MethArray.Green.T 11LU035 LUAD Methylation_Array tumor CPT0051690010 202178770083_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 25cc7309-ee8a-48d8-8fbb-70cd964f6a1d 522d9ff949793e9570ffc3ce07f0297b {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.MethArray.Red.T 11LU035 LUAD Methylation_Array tumor CPT0051690010 202178770083_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 6b3c3944-68ae-40fd-b2ba-fdd81987c209 89a9dd12542058b29e141aee46a28f1c {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.miRNA-Seq.S29_L007_R1.T 11LU035 LUAD miRNA-Seq tumor CPT0051690007 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L007_R1_001.unaln.bam 205078054 BAM S29_L007_R1 submitted_unaligned CPTAC3 cc308aa7-1870-40e8-bb76-17dc251cae90 ddb4ac28d86cb306dfa20ad9dd6ee61d {"aliquot_tag": "ALQ_b37d4ed2", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.miRNA-Seq.T.hg38 11LU035 LUAD miRNA-Seq tumor CPT0051690007 834f8510-5890-4124-912e-192ee6bb31ea_mirnaseq_gdc_realn.bam 228321743 BAM harmonized CPTAC3 638ed836-c7f7-4610-9e1f-d4ee8311cb41 526a56bc331a315c14cab88dbbe3eba6 {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.RNA-Seq.chimeric.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.chimeric.gdc_realn.bam 314558536 BAM chimeric harmonized CPTAC3 83fbf7d4-dc37-478f-b0b4-e6d42bbc6446 a034e575ea3a0699b6b378793772f185 {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.RNA-Seq.genomic.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.genomic.gdc_realn.bam 6826942393 BAM genomic harmonized CPTAC3 581198f7-a5bb-48a1-8d3b-9178e2acc76e cb2e443afe10b015ca2edb3b5828bc8f {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.RNA-Seq.S3_L006_R1.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R1_001.fastq.gz 3301808869 FASTQ S3_L006_R1 submitted_unaligned CPTAC3 a4928a2b-40a7-4b3b-9215-6c18d7837f81 d6293df171e9d5fa20250fd11ebd3ce6 {"aliquot_tag": "ALQ_b37d4ed2", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.RNA-Seq.S3_L006_R2.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R2_001.fastq.gz 3590554117 FASTQ S3_L006_R2 submitted_unaligned CPTAC3 927e1a09-f4ff-462b-a771-23f82da02ac1 c90ea00f8e66514d41f005e20adf1de5 {"aliquot_tag": "ALQ_b37d4ed2", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.RNA-Seq.transcriptome.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.transcriptome.gdc_realn.bam 9284220107 BAM transcriptome harmonized CPTAC3 426ec756-7bc8-4167-8024-ddd61fc3af03 411c36fe376e951d98e0ecfd33f1cfd0 {"aliquot_tag": "ALQ_b37d4ed2", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.WGS.N 11LU035 LUAD WGS blood_normal CPT0034540002 CPT0034540002.WholeGenome.RP-1303.bam 63978250331 BAM submitted_aligned CPTAC3 09e8a72a-fa82-407e-b236-d3b502d695b6 1aa49f631002f8912a2a6f9988ecb0a0 {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU035.WGS.N.hg38 11LU035 LUAD WGS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 97616909143 BAM harmonized CPTAC3 051bf441-b940-4e4b-95a9-86f8f892090c 32790a3f4a9a5734fa765782c4bc1a42 {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU035.WGS.T 11LU035 LUAD WGS tumor CPT0051690010 CPT0051690010.WholeGenome.RP-1303.bam 74480616961 BAM submitted_aligned CPTAC3 0b0c0e88-1aa3-44f5-a012-1510e623540a 6e4ccb5b5f85cbf312ad1f091c6434b4 {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010 e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 113280187604 BAM harmonized CPTAC3 83b77360-ef94-43ea-9ac2-7229808e2512 b189b1c9f7d0de556e9cde70d6afa3fc {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.WXS.N 11LU035 LUAD WXS blood_normal CPT0034540002 CPT0034540002.WholeExome.RP-1303.bam 42687240835 BAM submitted_aligned CPTAC3 fc4c8b93-f6d9-4662-b524-66384d0666ed ac0049c8469d1f6adf872b0b9ed56c1a {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU035.WXS.N.hg38 11LU035 LUAD WXS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 58600852881 BAM harmonized CPTAC3 7ac15e13-9ad5-43ec-9ab4-85844b7d218b ba6f9157169f002d0e08e52f9e8cadab {"aliquot_tag": "ALQ_29442a62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +11LU035.WXS.T 11LU035 LUAD WXS tumor CPT0051690010 CPT0051690010.WholeExome.RP-1303.bam 27791488684 BAM submitted_aligned CPTAC3 356fcdf9-26cc-449f-a484-19e036aa9101 cb7bd87e3a98b5152d636af9eb322240 {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} +11LU035.WXS.T.hg38 11LU035 LUAD WXS tumor CPT0051690010 e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 38318471577 BAM harmonized CPTAC3 2e9b2402-dc62-4923-8447-f78414eee9d8 ca4f23ccc40c1e76c40247405fc40d57 {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C1230738.DUP_eb44394c.MethArray.Green.T C1230738 GBM Methylation_Array tumor 7316UP-2837 205707890073_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6a93a1a5-d1e4-44fd-911f-e0ec24aba2f7 f285f94bd015d1bca9869e6bce52c1d9 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.DUP_eb44394c.MethArray.Red.T C1230738 GBM Methylation_Array tumor 7316UP-2837 205707890073_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 ac35ebec-0748-4db0-a74d-1fecfae94bef b7ac056caac1e124cd2cad3e10c1e398 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.DUP_eb44394c.WGS.T C1230738 GBM WGS tumor 7316UP-2837 7316UP-2837.WholeGenome.RP-2158.bam 69746897192 BAM submitted_aligned CPTAC3 f35a206c-e451-4218-9c40-07dd239012b8 aac0b7f9c5c1cdc413ff818d5f79cfe3 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.DUP_eb44394c.WGS.T.hg38 C1230738 GBM WGS tumor 7316UP-2837 062a4cb7-1a73-4382-9f16-fdd891218a97_wgs_gdc_realn.bam 201008105730 BAM harmonized CPTAC3 49344d55-2c3a-412b-910b-1faebfcea48d 5dc96a48b2b4f9f17fa5fc7b1e4560f5 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.DUP_eb44394c.WXS.T C1230738 GBM WXS tumor 7316UP-2837 7316UP-2837.WholeExome.RP-1303.bam 25636693051 BAM submitted_aligned CPTAC3 f1e8f2ec-063c-4de6-9ed2-86f00ad6d39e 7634a3d954df41c984b2399f460868bf {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.DUP_eb44394c.WXS.T.hg38 C1230738 GBM WXS tumor 7316UP-2837 062a4cb7-1a73-4382-9f16-fdd891218a97_wxs_gdc_realn.bam 34561898412 BAM harmonized CPTAC3 f6c72dde-4426-4a98-9716-e4490b425df3 78f96737a8281fb8640fc18810963790 {"aliquot_tag": "DUP_eb44394c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C1230738.DUP_fe862ae6.MethArray.Green.R C1230738 GBM Methylation_Array recurrent_tumor 7316UP-3741 205705520083_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c0969500-6f4e-4238-828a-79c4f1479b75 152fe8be73d3340d64c202ae82754c7b {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.DUP_fe862ae6.MethArray.Red.R C1230738 GBM Methylation_Array recurrent_tumor 7316UP-3741 205705520083_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 bf3e1d3e-5796-47b1-866e-741021885bf1 08b96ccca58779e6d203477cd04704f1 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.DUP_fe862ae6.WGS.R C1230738 GBM WGS recurrent_tumor 7316UP-3741 7316UP-3741.WholeGenome.RP-2158.bam 50417576165 BAM submitted_aligned CPTAC3 dd3fd775-330c-43c8-bfbc-5e0ab6dff59a b2adb45bf2f29c1d498bf730f5db9950 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.DUP_fe862ae6.WGS.R.hg38 C1230738 GBM WGS recurrent_tumor 7316UP-3741 b8ffd3e5-14a9-4f6e-b750-9de2206ac247_wgs_gdc_realn.bam 152793323610 BAM harmonized CPTAC3 2bcaca05-b511-49e8-ac08-b3496d3823f6 5112b6db93081efce8bdf4be1e53cd47 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.DUP_fe862ae6.WXS.R C1230738 GBM WXS recurrent_tumor 7316UP-3741 7316UP-3741.WholeExome.RP-1303.bam 28694893121 BAM submitted_aligned CPTAC3 1d9c4ae4-85b5-4f7c-96d9-b0cf9ac46c84 508547b0d43977b0b8899528ce7c5155 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.DUP_fe862ae6.WXS.R.hg38 C1230738 GBM WXS recurrent_tumor 7316UP-3741 b8ffd3e5-14a9-4f6e-b750-9de2206ac247_wxs_gdc_realn.bam 38762633340 BAM harmonized CPTAC3 12adff22-d44c-42eb-bbfc-717e1e007fdc 5801c76b4fe444be84096b8c37a4fd19 {"aliquot_tag": "DUP_fe862ae6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C1230738.miRNA-Seq.R.hg38 C1230738 GBM miRNA-Seq recurrent_tumor 7316UP-3741-1104759 ca58d064-dbe4-4aff-aab1-a9e088d0b437_mirnaseq_gdc_realn.bam 170341951 BAM harmonized CPTAC3 43127eb1-0cb9-490e-b41a-be211f9f2c14 845f3a27a60b7695db365340b8e105ef {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.miRNA-Seq.S20_L001_R1.R C1230738 GBM miRNA-Seq recurrent_tumor 7316UP-3741-1104759 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L001_R1_001.unaln.bam 148674938 BAM S20_L001_R1 submitted_unaligned CPTAC3 75b31b5b-5e92-4c02-b477-2a372ee0ace1 44d6d72feeb2b3f78c77eec3c2fc474f {"aliquot_tag": "ALQ_d584ef16", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.miRNA-Seq.S6_L003_R1.T C1230738 GBM miRNA-Seq tumor 7316UP-2837-1104818 210817_UNC31-K00269_0302_AHLCTHBBXY_CACGAT_S6_L003_R1_001.unaln.bam 343545469 BAM S6_L003_R1 submitted_unaligned CPTAC3 36541208-7a9e-4320-bc15-c46bb9f0f472 e6a1251e8ab524a477e467c69f86b31b {"aliquot_tag": "ALQ_542887e3", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.miRNA-Seq.T.hg38 C1230738 GBM miRNA-Seq tumor 7316UP-2837-1104818 d5e99f68-1f9f-4206-83cf-d3d07f211362_mirnaseq_gdc_realn.bam 391240415 BAM harmonized CPTAC3 a06b121d-b515-4282-a75b-2928ebf75b52 69317c5d14c14e7b99ef1b657c87b8ca {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.RNA-Seq.chimeric.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.chimeric.gdc_realn.bam 95280051 BAM chimeric harmonized CPTAC3 2ae2966e-3642-4051-a775-6bb81f8aca1c d46625616304afc319565c88ef68a372 {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.RNA-Seq.chimeric.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.chimeric.gdc_realn.bam 71224577 BAM chimeric harmonized CPTAC3 d259f7fe-98e4-4650-9f9b-084a3335a069 90fb1b0cd29b0ddfb6342f71921660f4 {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.RNA-Seq.genomic.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.genomic.gdc_realn.bam 7653991217 BAM genomic harmonized CPTAC3 9d98c7a5-8279-40d9-9eb2-180fbe9a1393 2043e52c870ba6df76b366db67e8dd29 {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.RNA-Seq.genomic.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.genomic.gdc_realn.bam 7822256033 BAM genomic harmonized CPTAC3 5b01e091-a339-4f18-b246-8998deb25060 2a1cbcf816b58b7450790b8eee2f1143 {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.RNA-Seq.S14_L004_R1.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R1_001.fastq.gz 3719032466 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 a0573c53-73bc-4841-8fb6-e5ae0bf87740 d4af0cbb6491f7ca2f9d04d7eae96f00 {"aliquot_tag": "ALQ_d584ef16", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.RNA-Seq.S14_L004_R2.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R2_001.fastq.gz 4079189731 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 eb68c408-9b99-4474-a4aa-8e8282e65874 145c7446121fca6bc55785db95e22245 {"aliquot_tag": "ALQ_d584ef16", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.RNA-Seq.S21_L006_R1.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R1_001.fastq.gz 3446087771 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 bcedfbaa-90dd-4081-8704-a1cb34ec9275 232051111d19440ee5851807edaf351c {"aliquot_tag": "ALQ_542887e3", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.RNA-Seq.S21_L006_R2.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R2_001.fastq.gz 3752803777 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 455058a8-b378-4ffa-9f8f-0726862855e4 b562d3358ba8bb38d56a2002bd651b26 {"aliquot_tag": "ALQ_542887e3", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.RNA-Seq.transcriptome.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.transcriptome.gdc_realn.bam 13606920308 BAM transcriptome harmonized CPTAC3 194a9653-8758-4751-9efc-c6b3c36d412a ac98c00524ac9a8732c9dc1f7155e0b4 {"aliquot_tag": "ALQ_d584ef16", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1230738.RNA-Seq.transcriptome.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.transcriptome.gdc_realn.bam 11279278020 BAM transcriptome harmonized CPTAC3 ca011220-cb7d-4464-8263-53450eb3f42f 4a3f94d5f5123ab9e1f143b96c6a2699 {"aliquot_tag": "ALQ_542887e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.WGS.N C1230738 GBM WGS blood_normal 7316UP-2837-1105281 7316UP-2837-1105281.WholeGenome.RP-2158.bam 49814298292 BAM submitted_aligned CPTAC3 a9630601-73b3-4447-bcaf-0ef5d48a7afd 0623cc8c784793913037eae198a764e8 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C1230738.WGS.N.hg38 C1230738 GBM WGS blood_normal 7316UP-2837-1105281 50a02e53-a4d7-4e01-9505-1321cc9f0e32_wgs_gdc_realn.bam 145688610322 BAM harmonized CPTAC3 91fdb084-280b-4301-a2dd-9ebd845f862c e2087e6e30b5a27eb836770fa5f53611 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C1230738.WGS.T C1230738 GBM WGS tumor 7316UP-2837-1105198 7316UP-2837-1105198.WholeGenome.RP-2158.bam 63902215677 BAM submitted_aligned CPTAC3 49dc59e8-8e4b-4ee7-8da5-c8741457b41b ccdc01fe3bae129c5221dea16cd37526 {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.WGS.T.hg38 C1230738 GBM WGS tumor 7316UP-2837-1105198 aee72b24-81c3-47b5-856d-35ff22208f84_wgs_gdc_realn.bam 187148349528 BAM harmonized CPTAC3 4f59cd18-e160-40bc-b20f-d9b6d6b2a828 0ee0bcfcdbf5558a7e7f940cd7d57fc8 {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.WXS.N C1230738 GBM WXS blood_normal 7316UP-2837-1105281 7316UP-2837-1105281.WholeExome.RP-1303.bam 24752739546 BAM submitted_aligned CPTAC3 7c45e702-2e8c-4706-8e0a-f0c5a02d8883 6097b06f8e45394823438e12bf5abba6 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C1230738.WXS.N.hg38 C1230738 GBM WXS blood_normal 7316UP-2837-1105281 50a02e53-a4d7-4e01-9505-1321cc9f0e32_wxs_gdc_realn.bam 33591352572 BAM harmonized CPTAC3 55926090-7cd6-4cf3-b401-206767350691 2e85996c8fe1d3cd2479378893753e45 {"aliquot_tag": "ALQ_491d66bd", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C1230738.WXS.T C1230738 GBM WXS tumor 7316UP-2837-1105198 7316UP-2837-1105198.WholeExome.RP-1303.bam 25663974485 BAM submitted_aligned CPTAC3 1dfde80e-ad35-4698-8708-833ed9db67b4 e93bb4dfc367431c05478c8e10a3ac2c {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1230738.WXS.T.hg38 C1230738 GBM WXS tumor 7316UP-2837-1105198 aee72b24-81c3-47b5-856d-35ff22208f84_wxs_gdc_realn.bam 34971128893 BAM harmonized CPTAC3 b06c50fe-383f-4cce-a9b0-9f70f118d5e0 b68b3a59d8e6701a491f122a7771841a {"aliquot_tag": "ALQ_2b9c5101", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C1245129.DUP_bede5e24.MethArray.Green.R C1245129 GBM Methylation_Array recurrent_tumor 7316UP-3639 205854140168_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 729f75e3-173c-4573-a673-93b8ec3f9dd8 2d82e384b86dd99d081acae15155165d {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1245129.DUP_bede5e24.MethArray.Red.R C1245129 GBM Methylation_Array recurrent_tumor 7316UP-3639 205854140168_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 eef47373-b2a6-4bad-bafe-96fb3b8d1be2 c0decb4b2ff29ef67bfbcfd2f6b87860 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1245129.DUP_bede5e24.WGS.R C1245129 GBM WGS recurrent_tumor 7316UP-3639 7316UP-3639.WholeGenome.RP-2158.bam 54503635300 BAM submitted_aligned CPTAC3 bde92380-6a06-432a-8937-9558526363bd fcf78917dfc26a68ec0d369fd4ae64d3 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1245129.DUP_bede5e24.WGS.R.hg38 C1245129 GBM WGS recurrent_tumor 7316UP-3639 aae8553d-f3af-44ff-a229-af238c3646a9_wgs_gdc_realn.bam 163737938502 BAM harmonized CPTAC3 7ecdf616-2ad4-454c-bbac-5ebe26cfe88e 695ece41ede6417f77b7e37cb61c7d82 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1245129.DUP_bede5e24.WXS.R C1245129 GBM WXS recurrent_tumor 7316UP-3639 7316UP-3639.WholeExome.RP-1303.bam 33535885886 BAM submitted_aligned CPTAC3 67022a09-c8a0-42f2-8a24-975f86875723 e5d125c5c765b8003ae640b7bd930b11 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1245129.DUP_bede5e24.WXS.R.hg38 C1245129 GBM WXS recurrent_tumor 7316UP-3639 aae8553d-f3af-44ff-a229-af238c3646a9_wxs_gdc_realn.bam 45396231257 BAM harmonized CPTAC3 aaa8082f-1261-406c-a1a2-cee82991b186 fda1ed76057e788d18c3e3ca4920ddb6 {"aliquot_tag": "DUP_bede5e24", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C1245129.DUP_f4f0a623.MethArray.Green.T C1245129 GBM Methylation_Array tumor 7316UP-2923 205705520055_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 29018c15-545a-40ad-a61a-afb48a872f13 cdc4611636222a5d3113d3a2cd0599fd {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.DUP_f4f0a623.MethArray.Red.T C1245129 GBM Methylation_Array tumor 7316UP-2923 205705520055_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 0e0d494c-fbb4-4174-9243-04f3da23d763 9cd8ef47603503a149d443bc8d61967c {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.DUP_f4f0a623.WGS.T C1245129 GBM WGS tumor 7316UP-2923 7316UP-2923.WholeGenome.RP-2158.bam 68310898527 BAM submitted_aligned CPTAC3 9ea042b4-5220-487e-90c0-8b5fb62d514f a6c72432b14b5314b02d5c8c954c0d41 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.DUP_f4f0a623.WGS.T.hg38 C1245129 GBM WGS tumor 7316UP-2923 5b739159-0dff-476e-932e-8198cb3c76e4_wgs_gdc_realn.bam 207756327142 BAM harmonized CPTAC3 f3c78e93-c869-4b25-b43b-eb115a89b242 7c377d8a6d5704601e24c58d20e27558 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.DUP_f4f0a623.WXS.T C1245129 GBM WXS tumor 7316UP-2923 7316UP-2923.WholeExome.RP-1303.bam 27658601868 BAM submitted_aligned CPTAC3 758f7bab-339d-4faa-882d-9bde7a947266 04368db0063df5781c5c208155946f11 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.DUP_f4f0a623.WXS.T.hg38 C1245129 GBM WXS tumor 7316UP-2923 5b739159-0dff-476e-932e-8198cb3c76e4_wxs_gdc_realn.bam 37402084587 BAM harmonized CPTAC3 9e05a653-da61-49f4-b2a7-b58f4781e760 7bec7856621541c16a5ef928197fec98 {"aliquot_tag": "DUP_f4f0a623", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C1245129.miRNA-Seq.S25_L002_R1.T C1245129 GBM miRNA-Seq tumor 7316UP-2923-1104788 210817_UNC31-K00269_0302_AHLCTHBBXY_ATCACG_S25_L002_R1_001.unaln.bam 170850244 BAM S25_L002_R1 submitted_unaligned CPTAC3 4c6f9c29-cffd-4122-9105-749f5f157cbf d6b5cf48ec736a8c0b3ba8b4cea74bc2 {"aliquot_tag": "ALQ_fd169e65", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.miRNA-Seq.T.hg38 C1245129 GBM miRNA-Seq tumor 7316UP-2923-1104788 84c32801-ffb5-4041-afc7-b5d3d0d2662c_mirnaseq_gdc_realn.bam 199065248 BAM harmonized CPTAC3 6c761508-f62b-42c9-9d63-ade01e856e12 5275486da0bfc9fc0cf618650b754f6a {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.RNA-Seq.chimeric.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.chimeric.gdc_realn.bam 119660118 BAM chimeric harmonized CPTAC3 dad645e8-a9e1-4869-8815-29bcee15350a 3c1984a4f0a7dea71ea76ba4b1f7a8db {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.RNA-Seq.genomic.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.genomic.gdc_realn.bam 8972721168 BAM genomic harmonized CPTAC3 dba372d2-a95c-4f22-b47a-eb7be11c2041 28451c204fd1f145d8bfb1911b5e86ef {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.RNA-Seq.S5_L002_R1.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4113617678 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 9146c2dd-2d86-4d94-8fc4-b913e7ad8216 4886899a6f2dd2b1dcf557ce3b7e98ff {"aliquot_tag": "ALQ_fd169e65", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.RNA-Seq.S5_L002_R2.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4453892311 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 8f848e37-a739-4737-82e9-8773182905fa c6c2a80a3e779d7abedf6589df2750dc {"aliquot_tag": "ALQ_fd169e65", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.RNA-Seq.transcriptome.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.transcriptome.gdc_realn.bam 19705646268 BAM transcriptome harmonized CPTAC3 8e7327de-3be5-4c40-8956-c72db85c5097 23b41c6100ce50bc120f7b2bc2cddf11 {"aliquot_tag": "ALQ_fd169e65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.WGS.N C1245129 GBM WGS blood_normal 7316UP-2923-1105282 7316UP-2923-1105282.WholeGenome.RP-2158.bam 48169949339 BAM submitted_aligned CPTAC3 b4c0b12c-e914-477c-a18e-ab5053ec2576 54ebe62fa736119316354b00a9f89dc6 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C1245129.WGS.N.hg38 C1245129 GBM WGS blood_normal 7316UP-2923-1105282 20c88342-81c8-4764-9735-20ad94c112dc_wgs_gdc_realn.bam 133936311434 BAM harmonized CPTAC3 d016185e-cf6e-4b21-9841-554ef3d18e7a 1557ae68c0a5250a68848461daba5399 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C1245129.WGS.T C1245129 GBM WGS tumor 7316UP-2923-1105251 7316UP-2923-1105251.WholeGenome.RP-2158.bam 62969913054 BAM submitted_aligned CPTAC3 ff7d7322-8f44-4cca-a899-bc04dbf62e37 1db7d752ce00873db0601bf84c662060 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.WGS.T.hg38 C1245129 GBM WGS tumor 7316UP-2923-1105251 fb858b07-76dc-48b4-9096-adb0aed38c31_wgs_gdc_realn.bam 182853426065 BAM harmonized CPTAC3 c12354a1-3d98-4407-b4c3-17e3acf05bf4 b94d52f3320ae92bd3e05f4f38eb43a0 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.WXS.N C1245129 GBM WXS blood_normal 7316UP-2923-1105282 7316UP-2923-1105282.WholeExome.RP-1303.bam 27679924367 BAM submitted_aligned CPTAC3 334eab09-2429-4ae9-9af9-293d49f76501 7d7a86c6c917c358db9576262890de67 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C1245129.WXS.N.hg38 C1245129 GBM WXS blood_normal 7316UP-2923-1105282 20c88342-81c8-4764-9735-20ad94c112dc_wxs_gdc_realn.bam 37470562835 BAM harmonized CPTAC3 db118e85-6218-469d-8655-42d3bf3b75ef c3f2de02733894527425f39467432a13 {"aliquot_tag": "ALQ_a3b4d2f5", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C1245129.WXS.R C1245129 GBM WXS recurrent_tumor 7316UP-3639-1105256 7316UP-3639-1105256.WholeExome.RP-1303.bam 27204369067 BAM submitted_aligned CPTAC3 acb1e32e-2c88-4584-b71a-846497512ffd 2b0d84e73cb5774aff2cc45ab1a53135 {"aliquot_tag": "ALQ_63c631a8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C1245129.WXS.R.hg38 C1245129 GBM WXS recurrent_tumor 7316UP-3639-1105256 b08780d1-2e5b-4dd7-86b3-f49441486e5f_wxs_gdc_realn.bam 36724219417 BAM harmonized CPTAC3 66a0d8b1-6281-4cdc-a867-8727a76e7962 77d34f1105314cafca557a26b8c127d7 {"aliquot_tag": "ALQ_63c631a8", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C1245129.WXS.T C1245129 GBM WXS tumor 7316UP-2923-1105251 7316UP-2923-1105251.WholeExome.RP-1303.bam 28736155132 BAM submitted_aligned CPTAC3 da97bd44-e486-4792-a8ec-76f714fdda25 c4588eb5fefc18bc280d869ae76ccf96 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C1245129.WXS.T.hg38 C1245129 GBM WXS tumor 7316UP-2923-1105251 fb858b07-76dc-48b4-9096-adb0aed38c31_wxs_gdc_realn.bam 39273198570 BAM harmonized CPTAC3 923cea70-4973-4a54-ad99-151028fe7669 13416529cba9464b6534908edfad00a7 {"aliquot_tag": "ALQ_8f13fd02", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C204057.DUP_4a62de3d.miRNA-Seq.R.hg38 C204057 GBM miRNA-Seq recurrent_tumor 7316UP-662-1104774 60f1f3f8-fef8-45b2-beab-36c9291569e8_mirnaseq_gdc_realn.bam 606525934 BAM harmonized CPTAC3 d8dd1512-16f2-4b2d-81a2-b563e73cb9a4 00cbbda3a9d04359959c684b54bf7dae {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_4a62de3d.miRNA-Seq.S10_L001_R1.R C204057 GBM miRNA-Seq recurrent_tumor 7316UP-662-1104774 210817_UNC31-K00269_0302_AHLCTHBBXY_CATTTT_S10_L001_R1_001.unaln.bam 521415951 BAM S10_L001_R1 submitted_unaligned CPTAC3 8526c4eb-aaa0-4bb3-8812-56020639eb8b 5b7f1d2cfcbedc57992709d47484c72a {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_4a62de3d.RNA-Seq.chimeric.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.chimeric.gdc_realn.bam 101149130 BAM chimeric harmonized CPTAC3 f3cd4119-98cb-42d8-afd3-baf748aba113 69b68f372286292349146ffc08014616 {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_4a62de3d.RNA-Seq.genomic.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.genomic.gdc_realn.bam 8538882691 BAM genomic harmonized CPTAC3 2f69044c-80a0-4124-bcfa-77b65f6d2147 8f919ebf3674bb4667f5fa6171a8a35a {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_4a62de3d.RNA-Seq.S11_L003_R1.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R1_001.fastq.gz 3677881669 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 0e05465c-1a40-4992-b207-86b0751b0fed 1c1742725730066771d56ceb3cd1f302 {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_4a62de3d.RNA-Seq.S11_L003_R2.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R2_001.fastq.gz 3967445180 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 68b5d360-095b-4ca6-9658-6d780328b56f 54737ba751891af24d40b67fee0fec85 {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_4a62de3d.RNA-Seq.transcriptome.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.transcriptome.gdc_realn.bam 13237889741 BAM transcriptome harmonized CPTAC3 4b4b9a02-c1b9-4cc6-98e1-4be67f886c24 d101ba55cd060e00ce9c8708068490ff {"aliquot_tag": "DUP_4a62de3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_970ef0d.WGS.R C204057 GBM WGS recurrent_tumor 7316UP-662-1105237 7316UP-662-1105237.WholeGenome.RP-2158.bam 50399269668 BAM submitted_aligned CPTAC3 79cfad83-3cab-4f9a-9d9d-df2bc48e331f 229958594d27f7254f9dec482a2d7e4d {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_970ef0d.WGS.R.hg38 C204057 GBM WGS recurrent_tumor 7316UP-662-1105237 3465d400-3fc4-410a-b8ba-df88867c8746_wgs_gdc_realn.bam 151816440796 BAM harmonized CPTAC3 abd63736-34f5-4b4c-85fb-337bc843b718 7d40faeafebc5e1ddbea600d30f9daf6 {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_970ef0d.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662-1105237 7316UP-662-1105237.WholeExome.RP-1303.bam 22253872234 BAM submitted_aligned CPTAC3 ba464092-6b3e-4c16-9ae5-b57c4cd4b9db b751f66d8a0940dc4aa1ff12a0a05616 {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_970ef0d.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662-1105237 3465d400-3fc4-410a-b8ba-df88867c8746_wxs_gdc_realn.bam 30036095166 BAM harmonized CPTAC3 f37d39a7-a7ad-4c33-a814-680141a6239f b50a855a58a38cfd164f8d07dbd28348 {"aliquot_tag": "DUP_970ef0d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C204057.DUP_abe8b610.MethArray.Green.R C204057 GBM Methylation_Array recurrent_tumor 7316UP-662 205555380040_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b8cabc20-fe7d-49bc-8f84-8cf4b686eadb 071e228dcf30aa7e5e017e8518d906d7 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_abe8b610.MethArray.Red.R C204057 GBM Methylation_Array recurrent_tumor 7316UP-662 205555380040_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 e5a0ec82-28df-4167-9ca1-8b10f616c777 de9ab024a1d7857561dd629748efe052 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_abe8b610.WGS.R C204057 GBM WGS recurrent_tumor 7316UP-662 7316UP-662.WholeGenome.RP-2158.bam 53133400430 BAM submitted_aligned CPTAC3 e6e7d712-5903-433f-8773-05a95164edd4 089467a5cca96d4323fa8041906f002f {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_abe8b610.WGS.R.hg38 C204057 GBM WGS recurrent_tumor 7316UP-662 7a8212fb-e9ec-4fd6-a169-7e943ce00917_wgs_gdc_realn.bam 157725120601 BAM harmonized CPTAC3 5d04ac45-7cb4-4c31-a169-fa49f15ff49b 9ffa39c134aec763b8230d503b3577b2 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_abe8b610.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662 7316UP-662.WholeExome.RP-1303.bam 13295977421 BAM submitted_aligned CPTAC3 940f4454-bee3-47bd-ae39-72c2b13c0ca8 19ee3e35dcca8e5720463f0e508fcae7 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.DUP_abe8b610.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662 7a8212fb-e9ec-4fd6-a169-7e943ce00917_wxs_gdc_realn.bam 18177857084 BAM harmonized CPTAC3 647e7ef3-b315-4885-b6eb-952d56aa1429 ac154d0d05621b157aa2b0475577ce77 {"aliquot_tag": "DUP_abe8b610", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C204057.DUP_fb79d37d.MethArray.Green.T C204057 GBM Methylation_Array tumor 7316UP-302 205854150169_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9f1ca366-1265-475f-97c9-48b62502632d 946ffa94c50b57644f39a44d81ac8398 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.DUP_fb79d37d.MethArray.Red.T C204057 GBM Methylation_Array tumor 7316UP-302 205854150169_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 d11a04a3-1094-4ba1-92b1-55e4e101485b 3d55405504538e7af602fc5faa60742b {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.DUP_fb79d37d.WGS.T C204057 GBM WGS tumor 7316UP-302 7316UP-302.WholeGenome.RP-2158.bam 63043564130 BAM submitted_aligned CPTAC3 1a331d7c-1fdf-465a-8e6f-f0ea3e83c361 9f81c4d8a556b7dd7651381184fa2798 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.DUP_fb79d37d.WGS.T.hg38 C204057 GBM WGS tumor 7316UP-302 b1b62bc9-91c7-416b-92c8-35f6e197980a_wgs_gdc_realn.bam 188708361770 BAM harmonized CPTAC3 589369f6-0b4f-4252-87e1-bdc4aa0a235d 8bad76a8e5cdaa5ee4dff62c9b86ecc7 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.DUP_fb79d37d.WXS.T C204057 GBM WXS tumor 7316UP-302 7316UP-302.WholeExome.RP-1303.bam 26620556360 BAM submitted_aligned CPTAC3 fcdbdf5e-1e17-41ad-a0a0-1e91613c2e20 5b55167488303a570a6fe332955414ee {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.DUP_fb79d37d.WXS.T.hg38 C204057 GBM WXS tumor 7316UP-302 b1b62bc9-91c7-416b-92c8-35f6e197980a_wxs_gdc_realn.bam 36138400689 BAM harmonized CPTAC3 6a93dee0-802a-47cc-90a5-37f686a9aebf 4b02bda3ae09d43d5883c49bcfc720f6 {"aliquot_tag": "DUP_fb79d37d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C204057.miRNA-Seq.S3_L001_R1.T C204057 GBM miRNA-Seq tumor 7316UP-302-1104767 210817_UNC31-K00269_0302_AHLCTHBBXY_CAAAAG_S3_L001_R1_001.unaln.bam 509744176 BAM S3_L001_R1 submitted_unaligned CPTAC3 12cf72af-38ef-4d78-b56d-b92e82aa0f22 0dbd1e59b93dbb8604b58a45f7a3d254 {"aliquot_tag": "ALQ_b63962c3", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.miRNA-Seq.T.hg38 C204057 GBM miRNA-Seq tumor 7316UP-302-1104767 c54cbbf3-bc52-456c-b6a8-983443eb9293_mirnaseq_gdc_realn.bam 582705856 BAM harmonized CPTAC3 023c8b7c-be32-4652-a82a-c9ad989327f8 d462fc3608c74e8888d022648d383c49 {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.RNA-Seq.chimeric.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.chimeric.gdc_realn.bam 55525337 BAM chimeric harmonized CPTAC3 06f6e7eb-34b7-4119-8702-c03923b9ce1d fc708895f2bdc73179660bdec669b844 {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.RNA-Seq.genomic.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.genomic.gdc_realn.bam 9177202279 BAM genomic harmonized CPTAC3 049ce0cf-c9c6-40e6-83e1-a52724f9426a 2398a3473950bb4854e9ae005610c3c0 {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.RNA-Seq.S31_L008_R1.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 3528309965 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37 20ac0424955a7467b7fadccdcc466f33 {"aliquot_tag": "ALQ_b63962c3", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.RNA-Seq.S31_L008_R2.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 3876277963 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 8e892ebf-f748-4b16-b9fb-bad025c61d0b 3d8aa0695e65046ba351a65e72285d8b {"aliquot_tag": "ALQ_b63962c3", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.RNA-Seq.transcriptome.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.transcriptome.gdc_realn.bam 14324601436 BAM transcriptome harmonized CPTAC3 5a8fdf6e-4cd1-4b7d-be7c-6dd79cbf286a 47eec3014922df7c5ef61caedd4655cc {"aliquot_tag": "ALQ_b63962c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.WGS.N C204057 GBM WGS blood_normal 7316UP-302-1105284 7316UP-302-1105284.WholeGenome.RP-2158.bam 51382775991 BAM submitted_aligned CPTAC3 4fcea472-64ed-4e2a-ad0b-832dd6fba527 8a2cd1f84171daff22db4280eb748a97 {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C204057.WGS.N.hg38 C204057 GBM WGS blood_normal 7316UP-302-1105284 881dda1b-14e9-4952-875d-033de239cc69_wgs_gdc_realn.bam 156336585636 BAM harmonized CPTAC3 355b4d9c-302a-4ac1-a27f-8f6c38ab51b1 3262c4134467a2b4675c0dd3ced1ee2f {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C204057.WGS.T C204057 GBM WGS tumor 7316UP-302-1105230 7316UP-302-1105230.WholeGenome.RP-2158.bam 49458426510 BAM submitted_aligned CPTAC3 d4819119-dcc7-45f5-8c8e-70624744ed84 5d733d33aaea6ad5b973cc65e66a45ce {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.WGS.T.hg38 C204057 GBM WGS tumor 7316UP-302-1105230 73fbc689-0c62-4ccb-8aaf-6d3697fc06e1_wgs_gdc_realn.bam 148956827638 BAM harmonized CPTAC3 f1b9b874-d882-4b5b-9573-0bae4430d09b c07ed50271de01db0438a70627500071 {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.WXS.N C204057 GBM WXS blood_normal 7316UP-302-1105284 7316UP-302-1105284.WholeExome.RP-1303.bam 23573196077 BAM submitted_aligned CPTAC3 8564b3ee-d4dc-4ba1-9752-4ecd0fdb35af df125056956ed2568efd200039ac6237 {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C204057.WXS.N.hg38 C204057 GBM WXS blood_normal 7316UP-302-1105284 881dda1b-14e9-4952-875d-033de239cc69_wxs_gdc_realn.bam 32070630898 BAM harmonized CPTAC3 0c1806b6-b54a-45ab-8f07-881b500abb78 cfb6f5816d8280e3eab16b93e8bd1f78 {"aliquot_tag": "ALQ_fc4bb79", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C204057.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662-1105227 7316UP-662-1105227.WholeExome.RP-1303.bam 27949418001 BAM submitted_aligned CPTAC3 79856ba8-1268-4a1f-b2c6-728e2191df5f 71cca779179fc942f22a0d4a871bd001 {"aliquot_tag": "ALQ_106bde4c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C204057.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662-1105227 0f5d2f2b-4a5d-4e6f-bb16-f6e6775e77de_wxs_gdc_realn.bam 37856594228 BAM harmonized CPTAC3 87c465ee-3126-4912-a605-014c6495376e 15f5c8e13eef42d401e71828171b0cf2 {"aliquot_tag": "ALQ_106bde4c", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C204057.WXS.T C204057 GBM WXS tumor 7316UP-302-1105230 7316UP-302-1105230.WholeExome.RP-1303.bam 21477886080 BAM submitted_aligned CPTAC3 c42d58e9-87d7-434d-86d9-a8365d4d6f91 81d2e1d633bfe9d2321f7861e5e4d48f {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C204057.WXS.T.hg38 C204057 GBM WXS tumor 7316UP-302-1105230 73fbc689-0c62-4ccb-8aaf-6d3697fc06e1_wxs_gdc_realn.bam 29244557440 BAM harmonized CPTAC3 a3e622c4-b84b-41a3-810a-97bf521ba9a9 edb94b33da4781e99805e56a2b15e3de {"aliquot_tag": "ALQ_eb5da6ab", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C207624.DUP_39bda097.MethArray.Green.R C207624 GBM Methylation_Array recurrent_tumor 7316UP-961 205705530002_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 55a73a6f-675b-45e4-8c6d-8d001ef6dcf7 38556dc7fa206d58684e1f6213c05659 {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.DUP_39bda097.MethArray.Red.R C207624 GBM Methylation_Array recurrent_tumor 7316UP-961 205705530002_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 62e0eeb7-8d76-43c5-8383-c29d50644825 7fa0ebd2c193192003cb9af7b4c55f95 {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.DUP_39bda097.WGS.R C207624 GBM WGS recurrent_tumor 7316UP-961 7316UP-961.WholeGenome.RP-2158.bam 48539159794 BAM submitted_aligned CPTAC3 daec3268-ea08-44c8-856f-f42bff316c6b f6638cdd41f767130800eedcb7e57caf {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.DUP_39bda097.WGS.R.hg38 C207624 GBM WGS recurrent_tumor 7316UP-961 432a45a0-ae46-4a33-a465-0d3434e6093a_wgs_gdc_realn.bam 147035556436 BAM harmonized CPTAC3 e7077c1b-99cb-4498-9dfa-306b2f5415eb b2ac66692816068c3957d24ff573f6ed {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.DUP_39bda097.WXS.R C207624 GBM WXS recurrent_tumor 7316UP-961 7316UP-961.WholeExome.RP-1303.bam 31458355354 BAM submitted_aligned CPTAC3 82200a05-7175-45ac-b33a-023baec9c206 8d4741c4c8279ecd037b63d68ada06ee {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.DUP_39bda097.WXS.R.hg38 C207624 GBM WXS recurrent_tumor 7316UP-961 432a45a0-ae46-4a33-a465-0d3434e6093a_wxs_gdc_realn.bam 42379057118 BAM harmonized CPTAC3 e0c0f08d-5dac-4e2d-a50c-baa692a6d650 61dbc889ea21f421770ad9fd394c7573 {"aliquot_tag": "DUP_39bda097", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C207624.DUP_8ab52100.MethArray.Green.T C207624 GBM Methylation_Array tumor 7316UP-603 205707890115_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c1ce334d-2013-4766-bd07-27c9185511b9 bbad0355210ece1fe5696263ebf42038 {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.DUP_8ab52100.MethArray.Red.T C207624 GBM Methylation_Array tumor 7316UP-603 205707890115_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 608cb82b-4b05-44d7-b633-39965a9b2f9e 65669e8deaa5dd2247df0914fcf55467 {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.DUP_8ab52100.WGS.T C207624 GBM WGS tumor 7316UP-603 7316UP-603.WholeGenome.RP-2158.bam 44572387735 BAM submitted_aligned CPTAC3 6672f7c2-cdfc-4b49-a4a2-7c6268af8e3f 10674ff683bc6dd56de7f7763652142b {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.DUP_8ab52100.WGS.T.hg38 C207624 GBM WGS tumor 7316UP-603 fd0af1cc-2bd5-4433-b288-a8f95f0f4eb9_wgs_gdc_realn.bam 374013516593 BAM harmonized CPTAC3 4640f446-9179-43cd-b41c-5c5ef7251c59 d5e80e251cb012ced49804ef05a7a3ad {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.DUP_8ab52100.WXS.T C207624 GBM WXS tumor 7316UP-603 7316UP-603.WholeExome.RP-1303.bam 23500383490 BAM submitted_aligned CPTAC3 21f27e5a-f142-436a-b61f-acd923395bde e8246c5d1764e772adce1746ac746b68 {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.DUP_8ab52100.WXS.T.hg38 C207624 GBM WXS tumor 7316UP-603 fd0af1cc-2bd5-4433-b288-a8f95f0f4eb9_wxs_gdc_realn.bam 31950446410 BAM harmonized CPTAC3 370da836-9a04-4ad5-9b4f-11270f994e3c 7cb72144dfb577eb84955687b43f85df {"aliquot_tag": "DUP_8ab52100", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C207624.miRNA-Seq.R.hg38 C207624 GBM miRNA-Seq recurrent_tumor 7316UP-961-1104765 0c86d4ea-afa3-4129-8d63-928a637fc1ca_mirnaseq_gdc_realn.bam 337684567 BAM harmonized CPTAC3 38e154d0-8876-49b3-b54b-62f03e25303f e82e4d6b7e82a6c01de1f5b707312f3f {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.miRNA-Seq.S1_L001_R1.R C207624 GBM miRNA-Seq recurrent_tumor 7316UP-961-1104765 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGAGC_S1_L001_R1_001.unaln.bam 304375832 BAM S1_L001_R1 submitted_unaligned CPTAC3 d0e95499-39a8-4dd2-826d-ae5806ddeb02 3709435a958c3b08e12f848edfc4c50f {"aliquot_tag": "ALQ_8e0b17e9", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.miRNA-Seq.S8_L002_R1.T C207624 GBM miRNA-Seq tumor 7316UP-603-1104773 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L002_R1_001.unaln.bam 210809739 BAM S8_L002_R1 submitted_unaligned CPTAC3 b164fd3d-fae8-41e6-8616-7751408cef41 0194a737c2b426c6dc998aae583fe7a5 {"aliquot_tag": "ALQ_ce632f9a", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.miRNA-Seq.T.hg38 C207624 GBM miRNA-Seq tumor 7316UP-603-1104773 218558d0-28d6-49d4-bb9a-64ac1fb77cb7_mirnaseq_gdc_realn.bam 248178964 BAM harmonized CPTAC3 12e8682c-6e14-40f3-9a72-51fde1c95fdb 07b8a41b78d2b7890b8d8d0d2b52ad57 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.RNA-Seq.chimeric.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.chimeric.gdc_realn.bam 60234867 BAM chimeric harmonized CPTAC3 461747d9-96d8-40f6-afe7-d9be0c7ecf2e 9df1d8fb1f3c9b6edb8fea12e1c44d0e {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.RNA-Seq.chimeric.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.chimeric.gdc_realn.bam 119564683 BAM chimeric harmonized CPTAC3 57a68cca-2a51-4d43-b548-82013fcdad76 add78b09b0ff0b3d7085d6da5edfb955 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.RNA-Seq.genomic.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.genomic.gdc_realn.bam 8812826716 BAM genomic harmonized CPTAC3 9886fc0f-f118-47a7-a890-ae83f1754079 6f776a4b6c0b5a0e4e290a9c7c9cb8b0 {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.RNA-Seq.genomic.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.genomic.gdc_realn.bam 8906386377 BAM genomic harmonized CPTAC3 ecf3e22c-87fa-4521-b475-9f51005d3c57 b27847e36933c3cb51be9763ae5b4452 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.RNA-Seq.S24_L006_R1.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 4159870756 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 851d1582-47e3-4694-a4ce-54b4f0ca7865 11fce1b39c68ad5a90fe8c12b6dbb44f {"aliquot_tag": "ALQ_ce632f9a", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.RNA-Seq.S24_L006_R2.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 4566212973 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 e3e4c767-7287-4451-9f1c-8b00cd2f8dd1 6b9ab39deed7cf5f8de14be482b5a544 {"aliquot_tag": "ALQ_ce632f9a", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.RNA-Seq.S7_L002_R1.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R1_001.fastq.gz 3805401120 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 3f6a1a61-d46d-4ec0-9635-1501d10f1e92 c440a9bc1ce5b24d6eef6b8108d63c77 {"aliquot_tag": "ALQ_8e0b17e9", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.RNA-Seq.S7_L002_R2.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R2_001.fastq.gz 4104689026 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 2b27d4e4-a94c-47e7-92d3-f317938b113c 1c0e87382af67ba51c6fb226195f4a86 {"aliquot_tag": "ALQ_8e0b17e9", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.RNA-Seq.transcriptome.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.transcriptome.gdc_realn.bam 17709819823 BAM transcriptome harmonized CPTAC3 04953bce-c19e-4182-9e06-a54f0c3ff368 2141573c0f2880890d0b6e030a41bb50 {"aliquot_tag": "ALQ_8e0b17e9", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.RNA-Seq.transcriptome.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.transcriptome.gdc_realn.bam 15949289625 BAM transcriptome harmonized CPTAC3 4cf455f3-03b8-4c5e-8972-679bd4dbe32c 663502bdb532d157a1672fbf243999b9 {"aliquot_tag": "ALQ_ce632f9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.WGS.N C207624 GBM WGS blood_normal 7316UP-603-1105207 7316UP-603-1105207.WholeGenome.RP-2158.bam 48365906283 BAM submitted_aligned CPTAC3 5d553f09-86f8-4815-8cea-4173bcf82b4d 597298ebb33213e2bc64e8e294c03d3f {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C207624.WGS.N.hg38 C207624 GBM WGS blood_normal 7316UP-603-1105207 6b62ddb3-3254-4be1-a8b9-f4bdf604084f_wgs_gdc_realn.bam 147386095799 BAM harmonized CPTAC3 60ee616b-34ea-4cb4-a7b9-ee547438873e 69c52914a18e6b89770303afbb414cc5 {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C207624.WGS.R C207624 GBM WGS recurrent_tumor 7316UP-961-1105228 7316UP-961-1105228.WholeGenome.RP-2158.bam 51892018820 BAM submitted_aligned CPTAC3 86a56d79-40ac-47fe-8c62-7f854fa6fc68 22210c926a27db709a47b8da5c5df378 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.WGS.R.hg38 C207624 GBM WGS recurrent_tumor 7316UP-961-1105228 5ca71d91-4680-43ff-bd33-c3d8fa14a225_wgs_gdc_realn.bam 154953390320 BAM harmonized CPTAC3 7c11efdf-e845-4f94-a953-cb56dcd035bc 9ce8d219856560048b098f739cf35ad3 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.WXS.N C207624 GBM WXS blood_normal 7316UP-603-1105207 7316UP-603-1105207.WholeExome.RP-1303.bam 22981380825 BAM submitted_aligned CPTAC3 f5130800-4b65-43c8-a053-2b6e914c590b cb00ec231ffaa2f0905a240437480173 {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C207624.WXS.N.hg38 C207624 GBM WXS blood_normal 7316UP-603-1105207 6b62ddb3-3254-4be1-a8b9-f4bdf604084f_wxs_gdc_realn.bam 31201072361 BAM harmonized CPTAC3 79625f39-4daa-494d-8913-7ed53fc923a8 ad4fb03b09afb1d1e9156a25eb396faa {"aliquot_tag": "ALQ_3838d8ca", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C207624.WXS.R C207624 GBM WXS recurrent_tumor 7316UP-961-1105228 7316UP-961-1105228.WholeExome.RP-1303.bam 26058311240 BAM submitted_aligned CPTAC3 8845f830-2f50-42de-94fb-2f0a30ab221e 6f20b9db6058f7910af131aa19da6310 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C207624.WXS.R.hg38 C207624 GBM WXS recurrent_tumor 7316UP-961-1105228 5ca71d91-4680-43ff-bd33-c3d8fa14a225_wxs_gdc_realn.bam 35272049609 BAM harmonized CPTAC3 ef71d6a1-7f85-4bd4-8377-9d47ac79cd42 2473249ccd19449acc4e90e0a0f6ec23 {"aliquot_tag": "ALQ_2aa10bde", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C207624.WXS.T C207624 GBM WXS tumor 7316UP-603-1105236 7316UP-603-1105236.WholeExome.RP-1303.bam 21605528792 BAM submitted_aligned CPTAC3 22146368-cc6c-4e49-9e71-1447474fd49a d160d7fc288281652e2fb8c080522473 {"aliquot_tag": "ALQ_6412bb9f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C207624.WXS.T.hg38 C207624 GBM WXS tumor 7316UP-603-1105236 0af3abb3-d73f-47f4-9f8a-9ac41d230bca_wxs_gdc_realn.bam 29550234938 BAM harmonized CPTAC3 1252d351-fbb5-4716-b862-028f33399922 30c91c33118c9261f9509eb0c5165d3a {"aliquot_tag": "ALQ_6412bb9f", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C208854.DUP_15b44502.WGS.T C208854 GBM WGS tumor 7316UP-613-1105231 7316UP-613-1105231.WholeGenome.RP-2158.bam 53280267937 BAM submitted_aligned CPTAC3 8567ce1f-6929-4a83-b435-515b66d20482 fecadcabd3805c78f4c8058849d33403 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_15b44502.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613-1105231 eb327532-25bd-4c10-a414-185474bdb7ef_wgs_gdc_realn.bam 154892466395 BAM harmonized CPTAC3 ce084882-0179-4eff-8700-3f917d1a9f5f ef075ada7471d8b75fdb42aff21894e9 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_15b44502.WXS.T C208854 GBM WXS tumor 7316UP-613-1105231 7316UP-613-1105231.WholeExome.RP-1303.bam 23980456638 BAM submitted_aligned CPTAC3 590d290b-2003-4d87-b61f-4b6ad5d5b241 375876a5012e7a1e191e88ffaeff4528 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_15b44502.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613-1105231 eb327532-25bd-4c10-a414-185474bdb7ef_wxs_gdc_realn.bam 33178156314 BAM harmonized CPTAC3 18f09f19-5cc3-413d-968f-a574a8a6084d f6abe07ddf1a37a12ec488389acfc2c3 {"aliquot_tag": "DUP_15b44502", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C208854.DUP_2e7d19e4.MethArray.Green.R C208854 GBM Methylation_Array recurrent_tumor 7316UP-979 205705520023_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 27b06d69-8b8b-4c5b-b107-c5e32fd34da5 97be70c79ad40d2c8a267bd69268ef48 {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.DUP_2e7d19e4.MethArray.Red.R C208854 GBM Methylation_Array recurrent_tumor 7316UP-979 205705520023_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 b6538f9f-5cef-4150-8cc0-b0b860a5b4f9 4d9e84f77a171c9d2958611aec756b05 {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.DUP_2e7d19e4.WGS.R C208854 GBM WGS recurrent_tumor 7316UP-979 7316UP-979.WholeGenome.RP-2158.bam 55074581506 BAM submitted_aligned CPTAC3 78df3313-e73b-4af5-9f48-b6355a6a92d9 ad09713853c02104c8b8b13e20ce08e2 {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.DUP_2e7d19e4.WGS.R.hg38 C208854 GBM WGS recurrent_tumor 7316UP-979 4a081753-34c5-425c-834b-a58bf7f6852a_wgs_gdc_realn.bam 164232072640 BAM harmonized CPTAC3 1a3d7f15-88b2-4db5-8ee9-5165f73e6c95 f59b28067d3116019a8d36026559aa1d {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.DUP_2e7d19e4.WXS.R C208854 GBM WXS recurrent_tumor 7316UP-979 7316UP-979.WholeExome.RP-1303.bam 31361921312 BAM submitted_aligned CPTAC3 aa0cc5f9-9b08-4f3a-b55c-1db2b68f82db 0ad32e6dc8343e6dad27b661e87c1a1e {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.DUP_2e7d19e4.WXS.R.hg38 C208854 GBM WXS recurrent_tumor 7316UP-979 4a081753-34c5-425c-834b-a58bf7f6852a_wxs_gdc_realn.bam 43685335710 BAM harmonized CPTAC3 ee614c68-b0f8-4e3b-ac11-408cb4bc95ad 38cc108f534accd6814235ca15b0813c {"aliquot_tag": "DUP_2e7d19e4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C208854.DUP_93ae1041.MethArray.Green.T C208854 GBM Methylation_Array tumor 7316UP-613 205854140169_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 753dca8a-c538-4461-bbc9-6f428acf886e 47d2f3b2fcb8d627639ee5b02967915f {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_93ae1041.MethArray.Red.T C208854 GBM Methylation_Array tumor 7316UP-613 205854140169_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 42ef4394-bca9-4f06-b2c1-ee5917845ab2 1bc919e6626a14af3781cec9532dbad7 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_93ae1041.WGS.T C208854 GBM WGS tumor 7316UP-613 7316UP-613.WholeGenome.RP-2158.bam 51528547167 BAM submitted_aligned CPTAC3 27997ad0-1509-45b0-b324-54b37ae66cde f556e6fabac000b143bd95ec3517bcf9 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_93ae1041.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613 9c504d59-e2a4-492c-ae3a-993e3f802cef_wgs_gdc_realn.bam 150118668478 BAM harmonized CPTAC3 a3290f46-6977-427f-8c5b-0f3f02d4e85f ea26602504e929f820651ed2ef442f33 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_93ae1041.WXS.T C208854 GBM WXS tumor 7316UP-613 7316UP-613.WholeExome.RP-1303.bam 21743058805 BAM submitted_aligned CPTAC3 192f3f34-7cb3-489a-a136-46c1257a12d5 75b9bb757b9ef9b49c1cb54f80a4c066 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_93ae1041.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613 9c504d59-e2a4-492c-ae3a-993e3f802cef_wxs_gdc_realn.bam 29608380930 BAM harmonized CPTAC3 af9ba009-d30c-4629-98a5-80c96e605e94 6940fb901cfdb81d96801b9797288018 {"aliquot_tag": "DUP_93ae1041", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C208854.DUP_af68ac6d.miRNA-Seq.S4_L001_R1.T C208854 GBM miRNA-Seq tumor 7316UP-613-1104768 210817_UNC31-K00269_0302_AHLCTHBBXY_CAACTA_S4_L001_R1_001.unaln.bam 319124792 BAM S4_L001_R1 submitted_unaligned CPTAC3 96ae0e23-3609-4e92-8cce-73a084757155 000e987907995d7fd1b2e7a145e9feea {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_af68ac6d.miRNA-Seq.T.hg38 C208854 GBM miRNA-Seq tumor 7316UP-613-1104768 1ea38c56-1c4e-4b22-9384-c644f7f1107a_mirnaseq_gdc_realn.bam 370736800 BAM harmonized CPTAC3 b9141a66-07a2-43ba-911d-f233eadc77c6 f937d7d7814cd0d462091b1471adf7c8 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_af68ac6d.RNA-Seq.chimeric.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.chimeric.gdc_realn.bam 41387195 BAM chimeric harmonized CPTAC3 68cf86b4-f579-4b01-81f9-0c40f0b201d0 8b0bf8812debbf9d55af6c33dce4540e {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_af68ac6d.RNA-Seq.genomic.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.genomic.gdc_realn.bam 8963599820 BAM genomic harmonized CPTAC3 4dcbea11-1c0b-4af5-991c-61daa3d739d7 de62feb74f4c0d811f1f405ecf573b50 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_af68ac6d.RNA-Seq.S13_L004_R1.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R1_001.fastq.gz 3590219283 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 182139b3-ba15-4e62-b4c8-572f6aa6937c d4b703f1ea765e87cf8d1b211b2aa324 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_af68ac6d.RNA-Seq.S13_L004_R2.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R2_001.fastq.gz 3900126651 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 977243c2-78c9-4409-ba05-1a11d89b52d6 b546600dc9ba21a85e161dce03332352 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.DUP_af68ac6d.RNA-Seq.transcriptome.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.transcriptome.gdc_realn.bam 12833670943 BAM transcriptome harmonized CPTAC3 1e6a2353-ac07-41b8-a3e3-5d021c4f3e0c be387d3286327c25dc8d29a43ad133e1 {"aliquot_tag": "DUP_af68ac6d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.WGS.N C208854 GBM WGS blood_normal 7316UP-613-1105214 7316UP-613-1105214.WholeGenome.RP-2158.bam 50706461361 BAM submitted_aligned CPTAC3 72887f40-c864-4a38-943f-6bc9a23839c4 81fe6743c9a38180722f248082183268 {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C208854.WGS.N.hg38 C208854 GBM WGS blood_normal 7316UP-613-1105214 440c4098-c44d-412d-b0d1-217347a7a683_wgs_gdc_realn.bam 148979882282 BAM harmonized CPTAC3 27863cbe-e9e0-42ff-9e34-06102194bfdb 2e0d5552fd421494c582142a63ef433a {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C208854.WGS.R C208854 GBM WGS recurrent_tumor 7316UP-979-1105201 7316UP-979-1105201.WholeGenome.RP-2158.bam 48370888424 BAM submitted_aligned CPTAC3 8bcc6a08-0ddb-4227-b24a-f7d23929dd3f 7324b544174e1cbf714dcf200ff57d05 {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.WGS.R.hg38 C208854 GBM WGS recurrent_tumor 7316UP-979-1105201 ed410371-455e-4995-ad53-4f8193379aff_wgs_gdc_realn.bam 137547923224 BAM harmonized CPTAC3 cf4ad53c-33ca-4a7e-9603-1e00fd5a5bf8 63f7489229bddfdc49c91bdf42463599 {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.WGS.T C208854 GBM WGS tumor 7316UP-613-1105226 7316UP-613-1105226.WholeGenome.RP-2158.bam 46609557127 BAM submitted_aligned CPTAC3 fbecca03-1af4-4d30-8a2c-57d07c87feb4 f71dcb57813b35f8dbbaf134191ea679 {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613-1105226 39d0b9dc-ead3-409f-87fc-484fee59f592_wgs_gdc_realn.bam 135875851954 BAM harmonized CPTAC3 36aac09f-30e3-4464-a20e-33c90605fe83 044fa8f1136748bb5090c38121cec123 {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.WXS.N C208854 GBM WXS blood_normal 7316UP-613-1105214 7316UP-613-1105214.WholeExome.RP-1303.bam 26660154490 BAM submitted_aligned CPTAC3 754d5b7a-f637-46e2-a5e7-e58d62a1b43e 975865c45dd70776e36e2ba7f66f7b6c {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C208854.WXS.N.hg38 C208854 GBM WXS blood_normal 7316UP-613-1105214 440c4098-c44d-412d-b0d1-217347a7a683_wxs_gdc_realn.bam 36329064168 BAM harmonized CPTAC3 58560d7d-dc88-405c-ac9c-7a5af669cbcc b7fda3172d1f7ce9a7d3c834d3c729f4 {"aliquot_tag": "ALQ_57e8d30f", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C208854.WXS.R C208854 GBM WXS recurrent_tumor 7316UP-979-1105201 7316UP-979-1105201.WholeExome.RP-1303.bam 26993568783 BAM submitted_aligned CPTAC3 96bb342a-acb5-4474-9c48-b3e0274aec8c 2ba8d86df49e8f60212310530ec8996f {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C208854.WXS.R.hg38 C208854 GBM WXS recurrent_tumor 7316UP-979-1105201 ed410371-455e-4995-ad53-4f8193379aff_wxs_gdc_realn.bam 36170830486 BAM harmonized CPTAC3 db570295-2e88-4c1b-8707-cb7a7845a333 ece46867e053f705c7a4090c01e7ee08 {"aliquot_tag": "ALQ_355118de", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C208854.WXS.T C208854 GBM WXS tumor 7316UP-613-1105226 7316UP-613-1105226.WholeExome.RP-1303.bam 21215977915 BAM submitted_aligned CPTAC3 3b0a87eb-969e-45f3-bdda-a2cdf407801b c2060b256cbcfc2d14eb033e4f0d242a {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C208854.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613-1105226 39d0b9dc-ead3-409f-87fc-484fee59f592_wxs_gdc_realn.bam 28593895334 BAM harmonized CPTAC3 20773aad-0e5f-4b6d-8542-6981c9bf31a9 ec3d2b0754bcf3be4ad2391336fc1e6f {"aliquot_tag": "ALQ_92cbe1e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C217710.DUP_e91fb26d.MethArray.Green.T C217710 GBM Methylation_Array tumor 7316UP-19 205828590001_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 548a5d6b-1bc0-4166-8778-d53f6df4d1c4 ec5e61e9d039ae0390ebec509f5a6ae4 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.DUP_e91fb26d.MethArray.Red.T C217710 GBM Methylation_Array tumor 7316UP-19 205828590001_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 94bfa561-795f-4d14-89bb-010777414cc0 f74d110c0655caa899f0c2bcdd673487 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.DUP_e91fb26d.WGS.T C217710 GBM WGS tumor 7316UP-19 7316UP-19.WholeGenome.RP-2158.bam 52811565719 BAM submitted_aligned CPTAC3 63c71c95-7bf7-46cc-b049-5163af8dc1c6 ce37eebc60678844629443a0bde61899 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.DUP_e91fb26d.WGS.T.hg38 C217710 GBM WGS tumor 7316UP-19 cdfb6ee2-5d43-478c-8f60-80c3c5ef589e_wgs_gdc_realn.bam 156499832002 BAM harmonized CPTAC3 0c89d6fb-4969-4d9d-8d68-05a42e533868 909e9448f77fd07fcaaa733b011b1a6d {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.DUP_e91fb26d.WXS.T C217710 GBM WXS tumor 7316UP-19 7316UP-19.WholeExome.RP-1303.bam 43873823632 BAM submitted_aligned CPTAC3 870d14bf-8aaf-494a-81fe-947dfa11787d 9d057509664a0689ef71657720d6ad12 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.DUP_e91fb26d.WXS.T.hg38 C217710 GBM WXS tumor 7316UP-19 cdfb6ee2-5d43-478c-8f60-80c3c5ef589e_wxs_gdc_realn.bam 60153137014 BAM harmonized CPTAC3 8bbd9c83-206a-4547-93fb-1dbc329c4128 91df9202899a6864590d162d20c1a3c2 {"aliquot_tag": "DUP_e91fb26d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C217710.MethArray.Green.R C217710 GBM Methylation_Array recurrent_tumor 7316UP-1534 205707890105_R01C01_Grn.idat 13677915 IDAT Green NA CPTAC3 074ff276-a07e-43a9-8713-65dd020df158 9728aa6ab902b42e8b53e47ee538e75e {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C217710.MethArray.Red.R C217710 GBM Methylation_Array recurrent_tumor 7316UP-1534 205707890105_R01C01_Red.idat 13677915 IDAT Red NA CPTAC3 9093e6cd-83e4-474a-9031-b055f7d793ca fd622fa63dc80f4c8bfc1df7cf85220b {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C217710.miRNA-Seq.S34_L002_R1.T C217710 GBM miRNA-Seq tumor 7316UP-19-1104782 210817_UNC31-K00269_0302_AHLCTHBBXY_TACAGC_S34_L002_R1_001.unaln.bam 345645442 BAM S34_L002_R1 submitted_unaligned CPTAC3 2790ed60-cbc8-45e5-9163-ef8019d37857 f1bd90e904143056332314d26e16da55 {"aliquot_tag": "ALQ_cd27e51d", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.miRNA-Seq.T.hg38 C217710 GBM miRNA-Seq tumor 7316UP-19-1104782 6e87f138-74dd-46c7-915a-6ce609ca29a6_mirnaseq_gdc_realn.bam 396118233 BAM harmonized CPTAC3 746414a8-6c70-4dba-86a6-93bc3e699c0a ecf6caea7cac78566a2d41fba779d823 {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.RNA-Seq.chimeric.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.chimeric.gdc_realn.bam 61467451 BAM chimeric harmonized CPTAC3 82aaf8d3-749f-4ba4-9ebd-988daf8fbd8e 9698a626e612f984acc5b8096c4b0a2c {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.RNA-Seq.genomic.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.genomic.gdc_realn.bam 7636439461 BAM genomic harmonized CPTAC3 94288feb-dfc3-4639-98d5-effc4eb9920f dfac69da0fe353aa0992c1c813ef286b {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.RNA-Seq.S16_L004_R1.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R1_001.fastq.gz 3640299302 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 4b6817fd-a951-4eb0-bdac-687b93cf4b88 504b6c07619eca6f9337027810fa773f {"aliquot_tag": "ALQ_cd27e51d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.RNA-Seq.S16_L004_R2.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R2_001.fastq.gz 3908136926 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 4650c90e-4e22-48a5-942f-48a9cd2b854d 7b1e22caaeebf8d40e741a37c00f7fa1 {"aliquot_tag": "ALQ_cd27e51d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.RNA-Seq.transcriptome.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.transcriptome.gdc_realn.bam 14787508544 BAM transcriptome harmonized CPTAC3 4f07515b-4fee-4733-a45a-a8a22e614394 e6b2c95083fbf84ff4be06db948ca955 {"aliquot_tag": "ALQ_cd27e51d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.WGS.N C217710 GBM WGS blood_normal 7316UP-1534-1105276 7316UP-1534-1105276.WholeGenome.RP-2158.bam 42699047182 BAM submitted_aligned CPTAC3 3b672292-d46c-47d9-8a16-820be2a1df27 0904f3af943819db329520fd69fbd768 {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C217710.WGS.N.hg38 C217710 GBM WGS blood_normal 7316UP-1534-1105276 8bd03e60-c7e2-4f21-8618-3bbfbab14e0f_wgs_gdc_realn.bam 121781435218 BAM harmonized CPTAC3 8e4974c6-65c8-4808-ac4a-530f6da8f875 01ae5df8c4fdbaf429dd513672318bb8 {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C217710.WGS.R C217710 GBM WGS recurrent_tumor 7316UP-1534 7316UP-1534.WholeGenome.RP-2158.bam 52402219420 BAM submitted_aligned CPTAC3 646c8302-ec6c-4ae5-a4d6-f52e2ca0d427 7fcdbcb20ae688519a12ecc36571ebef {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C217710.WGS.R.hg38 C217710 GBM WGS recurrent_tumor 7316UP-1534 6fb6d874-58c7-4ece-afce-575d4231a62e_wgs_gdc_realn.bam 157037230451 BAM harmonized CPTAC3 0b49269a-f716-4dda-8dd4-8c7fc370e9d1 353f71c7b68e2fb6fdfef394fa07b920 {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C217710.WXS.N C217710 GBM WXS blood_normal 7316UP-1534-1105276 7316UP-1534-1105276.WholeExome.RP-1303.bam 28868330979 BAM submitted_aligned CPTAC3 4dd64fa5-6f9b-4fd5-90d7-d035a8671553 5675c85b2f625af9769b02a848ac62af {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C217710.WXS.N.hg38 C217710 GBM WXS blood_normal 7316UP-1534-1105276 8bd03e60-c7e2-4f21-8618-3bbfbab14e0f_wxs_gdc_realn.bam 39176044019 BAM harmonized CPTAC3 21d37f10-b599-4797-b425-f15427444632 eafb54a7a9f7d21b0dbca89d1cbc4066 {"aliquot_tag": "ALQ_d5664ce3", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C217710.WXS.R C217710 GBM WXS recurrent_tumor 7316UP-1534 7316UP-1534.WholeExome.RP-1303.bam 25203950308 BAM submitted_aligned CPTAC3 566329d7-f198-4924-bf01-6cdd00d692a8 08e4d0b6e868277ba65d5c289c1f1fa6 {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C217710.WXS.R.hg38 C217710 GBM WXS recurrent_tumor 7316UP-1534 6fb6d874-58c7-4ece-afce-575d4231a62e_wxs_gdc_realn.bam 34120833987 BAM harmonized CPTAC3 419f929c-e711-431e-bb23-a3a84f54c9bf e52bbe777d993096e10d151447aff4d3 {"aliquot_tag": "ALQ_6820544b", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C217710.WXS.T C217710 GBM WXS tumor 7316UP-19-1105245 7316UP-19-1105245.WholeExome.RP-1303.bam 22589791817 BAM submitted_aligned CPTAC3 87b51d25-9339-49ab-920f-ab8cecd367e5 ab4ce8b229b7648690e1887995435e07 {"aliquot_tag": "ALQ_41819a3c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C217710.WXS.T.hg38 C217710 GBM WXS tumor 7316UP-19-1105245 49aea928-c7da-432e-aa39-ec92de5d9f00_wxs_gdc_realn.bam 30329595462 BAM harmonized CPTAC3 1d5ad431-811e-436c-8f11-dc1badb61be6 270bd4c6171cc57b31517e57572b1b3b {"aliquot_tag": "ALQ_41819a3c", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C219555.DUP_3937258b.MethArray.Green.R C219555 GBM Methylation_Array recurrent_tumor 7316UP-334 205707890073_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8bc6c249-f73a-4625-8894-11c9596a944b 7dadbfb438a60b2b40584a2082214f59 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.DUP_3937258b.MethArray.Red.R C219555 GBM Methylation_Array recurrent_tumor 7316UP-334 205707890073_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 dd59ad96-eb19-422d-8076-b92099136c03 ad6ee965047fccdd0ce3950d68b50274 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.DUP_3937258b.WGS.R C219555 GBM WGS recurrent_tumor 7316UP-334 7316UP-334.WholeGenome.RP-2158.bam 58828061146 BAM submitted_aligned CPTAC3 882cde8a-9ed0-4fcf-84c5-4e5717afd1a7 0a98c904b0bf15dfbc619670b4a420c4 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.DUP_3937258b.WGS.R.hg38 C219555 GBM WGS recurrent_tumor 7316UP-334 dabfaa11-3cce-47d8-a945-c85d5c40a6a7_wgs_gdc_realn.bam 177402486286 BAM harmonized CPTAC3 8ae9de4a-75fa-4dfb-8c50-ff32c7cd8aa1 0d2596fd4a943e5e51af47a0d93fb81f {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.DUP_3937258b.WXS.R C219555 GBM WXS recurrent_tumor 7316UP-334 7316UP-334.WholeExome.RP-1303.bam 30187741761 BAM submitted_aligned CPTAC3 8672a141-dd74-4e0e-ab12-6ae1ea12d83a cbc3eb75d2d9d87e9bf45730d1dc655b {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.DUP_3937258b.WXS.R.hg38 C219555 GBM WXS recurrent_tumor 7316UP-334 dabfaa11-3cce-47d8-a945-c85d5c40a6a7_wxs_gdc_realn.bam 40425836799 BAM harmonized CPTAC3 f33c138f-4700-492b-a2ed-83c90af51614 65607677f1d267a17da977684ef77cc4 {"aliquot_tag": "DUP_3937258b", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C219555.DUP_d29f9cc4.MethArray.Green.T C219555 GBM Methylation_Array tumor 7316UP-35 205854140144_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 0098bf4f-cf5e-40ea-a6e2-6fa1a85ab19b 5d3b53e33ad753c495fdd175ee0d3e94 {"aliquot_tag": "DUP_d29f9cc4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C219555.DUP_d29f9cc4.MethArray.Red.T C219555 GBM Methylation_Array tumor 7316UP-35 205854140144_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a8b205bd-6ad7-40b0-8fb0-66bbe3041542 96cf5276b64dde5168bbf68a660b4141 {"aliquot_tag": "DUP_d29f9cc4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C219555.miRNA-Seq.R.hg38 C219555 GBM miRNA-Seq recurrent_tumor 7316UP-334-1104785 005136d4-8e1f-46b0-ba15-fb85ac76ce9a_mirnaseq_gdc_realn.bam 270599952 BAM harmonized CPTAC3 54f0a5f9-245f-43ed-9b41-c95021fe3e4b f9c8cfde1fa303d3004fe9a27390c509 {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.miRNA-Seq.S12_L002_R1.R C219555 GBM miRNA-Seq recurrent_tumor 7316UP-334-1104785 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L002_R1_001.unaln.bam 231707571 BAM S12_L002_R1 submitted_unaligned CPTAC3 edce9c26-b973-45a8-bf27-2ff3e76b3bd8 b2a68eae9357e9dfdb8c738d300137fe {"aliquot_tag": "ALQ_5e99ece8", "sample": "S12", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.RNA-Seq.chimeric.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.chimeric.gdc_realn.bam 163579955 BAM chimeric harmonized CPTAC3 3fc385bf-967b-4874-9a94-c564719270b7 cf3e156c005262f1c5984f50120e0b48 {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.RNA-Seq.genomic.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.genomic.gdc_realn.bam 10356729173 BAM genomic harmonized CPTAC3 247c5814-1fd5-4768-b249-75e4f069dbfd 0ca0134bae7a3031a97043505ed2bab9 {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.RNA-Seq.S23_L006_R1.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R1_001.fastq.gz 4651016359 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 ddde0a66-c5c5-4aa0-8021-f4c5039e1adf c51ff4e283343f5e95d6e196be14f6e2 {"aliquot_tag": "ALQ_5e99ece8", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.RNA-Seq.S23_L006_R2.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R2_001.fastq.gz 5060489472 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 1871abee-0aa8-4766-b001-d9c3b0c8ff27 ce12fe866e58d02be49343030d28825e {"aliquot_tag": "ALQ_5e99ece8", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.RNA-Seq.transcriptome.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.transcriptome.gdc_realn.bam 17756769933 BAM transcriptome harmonized CPTAC3 d9bc6712-c73c-49c9-9fd2-bb7a9ce5c333 51a4d96f7e7e86169fe619887514cdfe {"aliquot_tag": "ALQ_5e99ece8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.WGS.N C219555 GBM WGS blood_normal 7316UP-334-1105285 7316UP-334-1105285.WholeGenome.RP-2158.bam 68621543980 BAM submitted_aligned CPTAC3 8ab71475-b793-47d1-b19b-ed65b1ddd041 3c5c94a59bd9e5fd10c4de71fde732af {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C219555.WGS.N.hg38 C219555 GBM WGS blood_normal 7316UP-334-1105285 244e6c1e-b17a-4bec-ac27-4a2765b149f7_wgs_gdc_realn.bam 206388670880 BAM harmonized CPTAC3 d2a01326-0fde-420b-8a11-23df57892a50 ed25c32d9211835f48ea1ec01ee01fbb {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C219555.WGS.R C219555 GBM WGS recurrent_tumor 7316UP-334-1105248 7316UP-334-1105248.WholeGenome.RP-2158.bam 71429152493 BAM submitted_aligned CPTAC3 8f0e725e-7d31-48ac-8a04-c1526e8edeac 2e28d375752ba773f7d62ac1539ac13e {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.WGS.R.hg38 C219555 GBM WGS recurrent_tumor 7316UP-334-1105248 2fd672f1-2ae2-4ad7-832c-343cf9c0dc72_wgs_gdc_realn.bam 213545190846 BAM harmonized CPTAC3 873d00c3-e72a-4710-8cf7-728864c2eb28 0bd5563fb3823547caf37dda43ccc1a8 {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.WGS.T C219555 GBM WGS tumor 7316UP-35-1105259 7316UP-35-1105259.WholeGenome.RP-2158.bam 51612850770 BAM submitted_aligned CPTAC3 919b5f49-39de-41bb-abd9-6c04952e500d 67b88addfe5a45e13daa454928d625bc {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C219555.WGS.T.hg38 C219555 GBM WGS tumor 7316UP-35-1105259 b8cc75d6-b8c2-4e04-8808-9c99797b2115_wgs_gdc_realn.bam 154831970957 BAM harmonized CPTAC3 6715f699-6a80-427d-b2c8-07a09f0682ca 1d4a6fefb3649c8e0e840fef1b6de1a6 {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C219555.WXS.N C219555 GBM WXS blood_normal 7316UP-334-1105285 7316UP-334-1105285.WholeExome.RP-1303.bam 32358444473 BAM submitted_aligned CPTAC3 a05ce773-9b47-43c5-a3b7-95f94c23e6a3 8cab5397421be7e2824cf4eb16f92b5c {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C219555.WXS.N.hg38 C219555 GBM WXS blood_normal 7316UP-334-1105285 244e6c1e-b17a-4bec-ac27-4a2765b149f7_wxs_gdc_realn.bam 43938591482 BAM harmonized CPTAC3 6c88f523-a5c3-411d-9915-73415a0c6c10 d69eb0b38e756f5104da619d4d9df56d {"aliquot_tag": "ALQ_e0ee4966", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C219555.WXS.R C219555 GBM WXS recurrent_tumor 7316UP-334-1105248 7316UP-334-1105248.WholeExome.RP-1303.bam 25559525369 BAM submitted_aligned CPTAC3 7fbb52ea-e534-4842-a4e4-b732b66a7606 3bf6f503087985b2f93ea61f74a52a6b {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C219555.WXS.R.hg38 C219555 GBM WXS recurrent_tumor 7316UP-334-1105248 2fd672f1-2ae2-4ad7-832c-343cf9c0dc72_wxs_gdc_realn.bam 35015525938 BAM harmonized CPTAC3 e12410da-6165-46b0-bde6-6da7de7906f7 6fdf76109958da2814c41bf8f8195cd9 {"aliquot_tag": "ALQ_32ea7ad7", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C219555.WXS.T C219555 GBM WXS tumor 7316UP-35-1105259 7316UP-35-1105259.WholeExome.RP-1303.bam 23960204308 BAM submitted_aligned CPTAC3 869a1730-a19a-4fc9-98e7-077f14452b5b 99852b1ff85731f9126c5411f8a8aed5 {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C219555.WXS.T.hg38 C219555 GBM WXS tumor 7316UP-35-1105259 b8cc75d6-b8c2-4e04-8808-9c99797b2115_wxs_gdc_realn.bam 33230013329 BAM harmonized CPTAC3 1d6f28a8-c2fe-4259-b1ed-b59d4b65d934 d43238f7cbb4c60e1360c31503ea396c {"aliquot_tag": "ALQ_b3edc47f", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C223491.DUP_41e87f66.MethArray.Green.R C223491 GBM Methylation_Array recurrent_tumor 7316UP-483 205705520154_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9d9ff60a-1502-4e8c-a193-7bddf0ab3bbd aa971c7175a9c1163d0b4de7585e31c7 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.DUP_41e87f66.MethArray.Red.R C223491 GBM Methylation_Array recurrent_tumor 7316UP-483 205705520154_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 323b52cf-9e89-460c-9375-cb6f575b87f9 6eb0da419d54fecc35102fedd5ff85c6 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.DUP_41e87f66.WGS.R C223491 GBM WGS recurrent_tumor 7316UP-483 7316UP-483.WholeGenome.RP-2158.bam 48571709354 BAM submitted_aligned CPTAC3 b737472a-27fd-4458-81e1-b6951939289b 76c548d4af0f2e32f325ada5f4d79d88 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.DUP_41e87f66.WGS.R.hg38 C223491 GBM WGS recurrent_tumor 7316UP-483 522b9088-599b-4b9f-8508-bf4e7c39e09d_wgs_gdc_realn.bam 146855438705 BAM harmonized CPTAC3 53f52c5e-9e16-4b4f-80bb-d5cf3488bb7f 09b2565ff51feabc40a05315729ce04c {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.DUP_41e87f66.WXS.R C223491 GBM WXS recurrent_tumor 7316UP-483 7316UP-483.WholeExome.RP-1303.bam 30751621621 BAM submitted_aligned CPTAC3 8fb10564-d2e3-409b-9a06-042169259b88 9c43dda87e49a102bab58208a5a39247 {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.DUP_41e87f66.WXS.R.hg38 C223491 GBM WXS recurrent_tumor 7316UP-483 522b9088-599b-4b9f-8508-bf4e7c39e09d_wxs_gdc_realn.bam 41630615778 BAM harmonized CPTAC3 beb5a8d2-4ca2-4beb-90d3-68bff12b16ce d2631a4c8a5f2add80eac93d4e54085e {"aliquot_tag": "DUP_41e87f66", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C223491.miRNA-Seq.R.hg38 C223491 GBM miRNA-Seq recurrent_tumor 7316UP-483-1104812 aa2e8ef0-daae-48d4-9c37-59a4963dbff7_mirnaseq_gdc_realn.bam 403474199 BAM harmonized CPTAC3 72fc4bc7-6e69-4845-b074-95c067fa8275 52b9db6072480bcfeb009a1030999025 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.miRNA-Seq.S43_L003_R1.R C223491 GBM miRNA-Seq recurrent_tumor 7316UP-483-1104812 210817_UNC31-K00269_0302_AHLCTHBBXY_ACTGAT_S43_L003_R1_001.unaln.bam 361925118 BAM S43_L003_R1 submitted_unaligned CPTAC3 eaef7f8f-75b6-4467-b88e-0e5422639d63 081c88f5d0f73a5611bfa0d07d85c323 {"aliquot_tag": "ALQ_afd90682", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.RNA-Seq.chimeric.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.chimeric.gdc_realn.bam 36655213 BAM chimeric harmonized CPTAC3 499e0d3c-b835-473b-83d0-17875ce1fc6f 8d8971605bd70b7787854631d4287455 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.RNA-Seq.genomic.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.genomic.gdc_realn.bam 11405701389 BAM genomic harmonized CPTAC3 9df33640-601a-45cc-8889-20e6a483224f 269513a67aadc54bd11d677cd104a4e7 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.RNA-Seq.S19_L005_R1.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R1_001.fastq.gz 4037245471 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 1c436956-9492-4126-8ed6-160d0909e49e 9ffa94c73af728fd8eb0ebd074099352 {"aliquot_tag": "ALQ_afd90682", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.RNA-Seq.S19_L005_R2.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R2_001.fastq.gz 4283501940 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 a46bf346-0896-46e7-a3c2-ca63e1e137a0 bfa5879e591fba0a64a7405513531247 {"aliquot_tag": "ALQ_afd90682", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.RNA-Seq.transcriptome.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.transcriptome.gdc_realn.bam 17383707923 BAM transcriptome harmonized CPTAC3 535d00cf-915f-415e-a3a6-589456b31e1c bd761465cec00429ac5150c16189c2e4 {"aliquot_tag": "ALQ_afd90682", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.WGS.R C223491 GBM WGS recurrent_tumor 7316UP-483-1105191 7316UP-483-1105191.WholeGenome.RP-2158.bam 52692734505 BAM submitted_aligned CPTAC3 7fc1bd1b-2147-44ed-91d9-cf53b966f700 8841250ca3857d6c82ddd15f240e9209 {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.WGS.R.hg38 C223491 GBM WGS recurrent_tumor 7316UP-483-1105191 d235c25d-bb95-4dc9-a1b3-128f850fd737_wgs_gdc_realn.bam 158218502480 BAM harmonized CPTAC3 3618f1c0-bc30-4f7e-ae8c-b3e91d478cec d27dcd351a7166a98b261ca3a12319a0 {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.WGS.T C223491 GBM WGS tumor 7316UP-99 7316UP-99.WholeGenome.RP-2158.bam 49865930928 BAM submitted_aligned CPTAC3 cf5efe80-b78b-452d-8f15-b60678ac0fa8 f6ed1c9218fbcd62dae4e622cf245062 {"aliquot_tag": "ALQ_21c63865", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C223491.WGS.T.hg38 C223491 GBM WGS tumor 7316UP-99 7980012c-6c74-4d70-8946-86a3479417c0_wgs_gdc_realn.bam 432727220691 BAM harmonized CPTAC3 412e0e3f-8c87-4641-9204-126bc09e68ac f93c506e1db1d708fe3ffcdc4e57cb22 {"aliquot_tag": "ALQ_21c63865", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C223491.WXS.N C223491 GBM WXS blood_normal 7316UP-483-1105289 7316UP-483-1105289.WholeExome.RP-1303.bam 20512771626 BAM submitted_aligned CPTAC3 367f70e0-fa2a-4680-bc61-984611e74928 7932b754fb2c0bd80ccc9a514dd6f8ab {"aliquot_tag": "ALQ_5ce286f0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C223491.WXS.N.hg38 C223491 GBM WXS blood_normal 7316UP-483-1105289 49dcce64-3419-4987-952e-55d7cbd236e4_wxs_gdc_realn.bam 28176936824 BAM harmonized CPTAC3 6930c8e7-67ee-4f60-9feb-a4ea5410ffb7 387507faa86e14be753f0b81241db44d {"aliquot_tag": "ALQ_5ce286f0", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C223491.WXS.R C223491 GBM WXS recurrent_tumor 7316UP-483-1105191 7316UP-483-1105191.WholeExome.RP-1303.bam 15164145344 BAM submitted_aligned CPTAC3 fd8663d4-c762-4db2-b8a0-031382dc3666 20dee35180874ce7ded6069ea7c7aeba {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C223491.WXS.R.hg38 C223491 GBM WXS recurrent_tumor 7316UP-483-1105191 d235c25d-bb95-4dc9-a1b3-128f850fd737_wxs_gdc_realn.bam 20687623019 BAM harmonized CPTAC3 48495898-8b43-46dc-8dd4-da3253772b14 1ca886c2e3e1df682089cae43f0a453c {"aliquot_tag": "ALQ_496481da", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C224106.DUP_4208c7cd.WGS.T C224106 GBM WGS tumor 7316UP-287 7316UP-287.WholeGenome.RP-2158.bam 57941003136 BAM submitted_aligned CPTAC3 14a6ce1c-24ce-4888-bbac-7115538ed5fa 99d73dc54dd42710a392b852d8f89a9b {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.DUP_4208c7cd.WGS.T.hg38 C224106 GBM WGS tumor 7316UP-287 03758b31-f5e1-4bea-8001-a5147945dafa_wgs_gdc_realn.bam 169657009041 BAM harmonized CPTAC3 0c382407-5002-43eb-832a-57e8a14d039e 46d02d8f3e011c06c608fa192a5c7789 {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.DUP_4208c7cd.WXS.T C224106 GBM WXS tumor 7316UP-287 7316UP-287.WholeExome.RP-1303.bam 26187586378 BAM submitted_aligned CPTAC3 4e2edbeb-e029-4333-9431-a9d342ee7bff 533b74a6248fe294c445c8a905a140cf {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.DUP_4208c7cd.WXS.T.hg38 C224106 GBM WXS tumor 7316UP-287 03758b31-f5e1-4bea-8001-a5147945dafa_wxs_gdc_realn.bam 35883300355 BAM harmonized CPTAC3 68b960fe-389d-45f1-a5b1-4500a8670c48 8779d986550dac51903c0c6d53991808 {"aliquot_tag": "DUP_4208c7cd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C224106.DUP_b88a1276.MethArray.Green.R C224106 GBM Methylation_Array recurrent_tumor 7316UP-895 205555380005_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ee637352-7622-4e78-8f49-4cb6f331c81d 80dec5d35eebcaa1deb4e5bb7606bd47 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.DUP_b88a1276.MethArray.Red.R C224106 GBM Methylation_Array recurrent_tumor 7316UP-895 205555380005_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 d9924715-fa6d-4c08-b850-4512b5933c34 b995417ecc9afd4ecd1c21cdb1c9b668 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.DUP_b88a1276.WGS.R C224106 GBM WGS recurrent_tumor 7316UP-895 7316UP-895.WholeGenome.RP-2158.bam 56580658686 BAM submitted_aligned CPTAC3 bff5850e-413d-4144-9d2a-d86b489b09d5 b195758db70019dabe68ab3f3df6934a {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.DUP_b88a1276.WGS.R.hg38 C224106 GBM WGS recurrent_tumor 7316UP-895 cad5e2fe-1eac-4c95-9778-6936f202f45f_wgs_gdc_realn.bam 166463595508 BAM harmonized CPTAC3 2eea8e90-93af-4c4b-b5c5-dc7d0df38c79 0ec20d1521963c813506924172ab5972 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.DUP_b88a1276.WXS.R C224106 GBM WXS recurrent_tumor 7316UP-895 7316UP-895.WholeExome.RP-1303.bam 31935073467 BAM submitted_aligned CPTAC3 fad3c698-2343-44c6-964a-bc3ef345becc 10954a95e1303d746ae1dd550acf104b {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.DUP_b88a1276.WXS.R.hg38 C224106 GBM WXS recurrent_tumor 7316UP-895 cad5e2fe-1eac-4c95-9778-6936f202f45f_wxs_gdc_realn.bam 43570399546 BAM harmonized CPTAC3 fac107b0-84b9-43d3-9b61-b427d765c21e 2f1d414544357541c339f38282346855 {"aliquot_tag": "DUP_b88a1276", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C224106.miRNA-Seq.R.hg38 C224106 GBM miRNA-Seq recurrent_tumor 7316UP-895-1104770 10425193-5847-4cf7-a5ca-17100f107991_mirnaseq_gdc_realn.bam 480265592 BAM harmonized CPTAC3 460a3629-f722-4776-85dc-1869bf024432 28fb3354a3fa3b29081f8b52c82a1424 {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.miRNA-Seq.S1_L003_R1.T C224106 GBM miRNA-Seq tumor 7316UP-287-1104813 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGAGC_S1_L003_R1_001.unaln.bam 256591520 BAM S1_L003_R1 submitted_unaligned CPTAC3 943ff38d-a88f-4765-9d04-c8c525f3bfdd d6fd5d6e4dcf39d72fb4b256220a770f {"aliquot_tag": "ALQ_6d87ad5b", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.miRNA-Seq.S6_L001_R1.R C224106 GBM miRNA-Seq recurrent_tumor 7316UP-895-1104770 210817_UNC31-K00269_0302_AHLCTHBBXY_CACGAT_S6_L001_R1_001.unaln.bam 427802412 BAM S6_L001_R1 submitted_unaligned CPTAC3 295ba69a-2716-4ae2-b09e-198a6b014b76 5ecf4f1b00db068f403e38a85d3eb67a {"aliquot_tag": "ALQ_8a130766", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.miRNA-Seq.T.hg38 C224106 GBM miRNA-Seq tumor 7316UP-287-1104813 95379e20-dd9e-495e-be1c-ea43f37a3966_mirnaseq_gdc_realn.bam 285805780 BAM harmonized CPTAC3 f36ab729-410a-49cc-97b9-cf6b3b4bc706 08494ef2977d8fa82bde8cbd8ccbdb2c {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.RNA-Seq.chimeric.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.chimeric.gdc_realn.bam 82318793 BAM chimeric harmonized CPTAC3 8645fca5-9ceb-4d95-9f1f-1a5ade5e8725 8117bd6d73b80010fb48210bfc98e3fb {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.RNA-Seq.chimeric.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.chimeric.gdc_realn.bam 107879322 BAM chimeric harmonized CPTAC3 5cb73372-7217-4891-87c0-ad66e130ffc0 6a90be9bd1bdd8da16eb604beddaa434 {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.RNA-Seq.genomic.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.genomic.gdc_realn.bam 11315891908 BAM genomic harmonized CPTAC3 2ae0fcc0-fe9d-4c71-a3e8-b8062afe1710 c0cb175bbd9b33c9677e3b5c69b293c4 {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.RNA-Seq.genomic.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.genomic.gdc_realn.bam 9924215225 BAM genomic harmonized CPTAC3 d99f2d51-7f71-4145-bf9a-bd028efe6e6b 974b875a1479a3ed3fa56a3b60d6c24a {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.RNA-Seq.S1_L001_R1.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R1_001.fastq.gz 4455928117 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e 513da73b88e9f6b073b04630e292ccfc {"aliquot_tag": "ALQ_8a130766", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.RNA-Seq.S1_L001_R2.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R2_001.fastq.gz 5140415733 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 6dddfa45-9731-416b-b47f-be884511bc5b 595bdff955d047f1f467300fc23eb2ea {"aliquot_tag": "ALQ_8a130766", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.RNA-Seq.S20_L005_R1.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R1_001.fastq.gz 4345500965 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 286d824a-e222-4b66-a50f-83ba2dfb89f4 3f69ffb8ffe4ff268f2bdff3e571eef2 {"aliquot_tag": "ALQ_6d87ad5b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.RNA-Seq.S20_L005_R2.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R2_001.fastq.gz 4825520697 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 1f9ffd59-cfe7-4040-9d6a-68c01075fe7a ab1d7f7d4fdac2ccb0a2153afc3699d1 {"aliquot_tag": "ALQ_6d87ad5b", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.RNA-Seq.transcriptome.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.transcriptome.gdc_realn.bam 14515844936 BAM transcriptome harmonized CPTAC3 506bbf6b-7e4f-48a7-b0be-6d6014dd591a c322cf33e0acac48ec8b13b529d511f6 {"aliquot_tag": "ALQ_8a130766", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.RNA-Seq.transcriptome.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.transcriptome.gdc_realn.bam 19283757877 BAM transcriptome harmonized CPTAC3 48880a9f-0675-4e53-86d4-ae4c66b78062 c07dc7bbed242b2c10734d5e225fd511 {"aliquot_tag": "ALQ_6d87ad5b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.WGS.N C224106 GBM WGS blood_normal 7316UP-287-1105215 7316UP-287-1105215.WholeGenome.RP-2158.bam 60059311186 BAM submitted_aligned CPTAC3 e16365a8-367a-4945-a052-9125915293c1 4dee19ced6e06c643291f05488cf14f8 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C224106.WGS.N.hg38 C224106 GBM WGS blood_normal 7316UP-287-1105215 e7e95603-5344-4c1c-9521-c6170cd21afc_wgs_gdc_realn.bam 177393500318 BAM harmonized CPTAC3 27b129be-59e4-45b6-a760-37f62e4febe4 c557a9f2c0ff0e3e212174075315ca94 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C224106.WGS.R C224106 GBM WGS recurrent_tumor 7316UP-895-1105233 7316UP-895-1105233.WholeGenome.RP-2158.bam 65179748190 BAM submitted_aligned CPTAC3 ca7f9da0-0679-4be0-933f-f117d49d5089 b6ef7970c6c47d5b27832b599cce0fc3 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.WGS.R.hg38 C224106 GBM WGS recurrent_tumor 7316UP-895-1105233 3a5851ea-4c01-4e59-9b77-648f9049b8f5_wgs_gdc_realn.bam 190836116792 BAM harmonized CPTAC3 48289e74-5ce6-4ae3-879b-2e43605f75a8 b4776e0e7a1926310180c3859d1defc8 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.WGS.T C224106 GBM WGS tumor 7316UP-287-1105192 7316UP-287-1105192.WholeGenome.RP-2158.bam 49517781076 BAM submitted_aligned CPTAC3 fa03d5a2-d2cc-4688-bf42-61bec824f21c 050897226624b750777a305bdb623838 {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.WGS.T.hg38 C224106 GBM WGS tumor 7316UP-287-1105192 a5fb9d82-568c-4f92-9d20-ff80d6bce284_wgs_gdc_realn.bam 142815256943 BAM harmonized CPTAC3 4b8621c8-b515-46b2-be8b-6ae003ea0291 57928ee84391098ae6aff62ab601e720 {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.WXS.N C224106 GBM WXS blood_normal 7316UP-287-1105215 7316UP-287-1105215.WholeExome.RP-1303.bam 28440047682 BAM submitted_aligned CPTAC3 33ee6834-8406-45cc-ac7c-2f50544151bc aed1e3168ad3e0b30c4ec492cac763d0 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C224106.WXS.N.hg38 C224106 GBM WXS blood_normal 7316UP-287-1105215 e7e95603-5344-4c1c-9521-c6170cd21afc_wxs_gdc_realn.bam 38658005464 BAM harmonized CPTAC3 027df754-bfba-4dd3-a19e-66052fdfd928 daa060fafa614ee597a7886c022014b9 {"aliquot_tag": "ALQ_31cfeadd", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C224106.WXS.R C224106 GBM WXS recurrent_tumor 7316UP-895-1105233 7316UP-895-1105233.WholeExome.RP-1303.bam 20933872946 BAM submitted_aligned CPTAC3 597f884b-d907-4300-8505-658bee55f16f c60da75d2d6c71982090f7b645d81df0 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224106.WXS.R.hg38 C224106 GBM WXS recurrent_tumor 7316UP-895-1105233 3a5851ea-4c01-4e59-9b77-648f9049b8f5_wxs_gdc_realn.bam 28402074341 BAM harmonized CPTAC3 867233a4-8efd-4dbe-8ec6-bdd9c988c603 09855f3fbfdd7f14f90189c28a957821 {"aliquot_tag": "ALQ_c9013656", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C224106.WXS.T C224106 GBM WXS tumor 7316UP-287-1105192 7316UP-287-1105192.WholeExome.RP-1303.bam 19953957842 BAM submitted_aligned CPTAC3 3bf37e1a-b64b-422e-9a8e-615a7be715d1 bd66881d33a80743296fbe8bfaee4c8e {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224106.WXS.T.hg38 C224106 GBM WXS tumor 7316UP-287-1105192 a5fb9d82-568c-4f92-9d20-ff80d6bce284_wxs_gdc_realn.bam 27371401350 BAM harmonized CPTAC3 3345bb07-d0be-4306-be6e-ea632f8c5fc8 df80116e4bc22f698838a88d49993f27 {"aliquot_tag": "ALQ_65344b2f", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C224967.DUP_97671269.MethArray.Green.R C224967 GBM Methylation_Array recurrent_tumor 7316UP-1273 205828590069_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 4002cea1-cf8f-4e48-a219-cf7e1964c589 cd9f6a2ddcba09c12a31ea8f77faa598 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.DUP_97671269.MethArray.Red.R C224967 GBM Methylation_Array recurrent_tumor 7316UP-1273 205828590069_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 6d0d0709-3af1-4c8b-9500-49585579b21e 45dac0ea9d2079cd44bdcede08d04511 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.DUP_97671269.WXS.R C224967 GBM WXS recurrent_tumor 7316UP-1273 7316UP-1273.WholeExome.RP-1303.bam 27413593642 BAM submitted_aligned CPTAC3 f5a8ace0-8716-4e5d-af37-d12769d3edc6 e2741b38c4d431dfbaeb72013ed8aa51 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.DUP_97671269.WXS.R.hg38 C224967 GBM WXS recurrent_tumor 7316UP-1273 c520a681-f3c5-4157-8b67-364ad4104265_wxs_gdc_realn.bam 37149938502 BAM harmonized CPTAC3 e72af532-2544-456c-beb7-03e7c6285da4 dbd50a58144863afffb399615af92024 {"aliquot_tag": "DUP_97671269", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C224967.DUP_ef1b8e33.MethArray.Green.T C224967 GBM Methylation_Array tumor 7316UP-743 205705520055_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b500a541-9378-4e4c-88ab-66da85c4df36 79e729c911ac2d984e47d38769907d1b {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.DUP_ef1b8e33.MethArray.Red.T C224967 GBM Methylation_Array tumor 7316UP-743 205705520055_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2a4b881c-fbf2-4238-98a4-bd221e822821 f87bb0fe3dc909a45dfa8c8974b2b490 {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.DUP_ef1b8e33.WGS.T C224967 GBM WGS tumor 7316UP-743 7316UP-743.WholeGenome.RP-2158.bam 58240269975 BAM submitted_aligned CPTAC3 4578becb-41cf-4fc7-b259-ee6f44f09eaa aade7bc9761d2e3465391e09307baeff {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.DUP_ef1b8e33.WGS.T.hg38 C224967 GBM WGS tumor 7316UP-743 75069e02-ca1b-4e5d-bd9a-7e0996430dec_wgs_gdc_realn.bam 165788884307 BAM harmonized CPTAC3 fda005d3-c221-4963-8290-3cf5beadeb01 3c4dcb78ffde05188f0f602019a9bebe {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.DUP_ef1b8e33.WXS.T C224967 GBM WXS tumor 7316UP-743 7316UP-743.WholeExome.RP-1303.bam 31009431067 BAM submitted_aligned CPTAC3 dc44ea94-f178-4e1b-858b-a0f67cca2112 7e7177cc1a11ab3d1d8aa31148f43e5c {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.DUP_ef1b8e33.WXS.T.hg38 C224967 GBM WXS tumor 7316UP-743 75069e02-ca1b-4e5d-bd9a-7e0996430dec_wxs_gdc_realn.bam 109072739431 BAM harmonized CPTAC3 406c1599-e9aa-41f3-95d8-3126dece3c82 2d9000c96bf9f08e036ecb2cd60dd29c {"aliquot_tag": "DUP_ef1b8e33", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C224967.miRNA-Seq.R.hg38 C224967 GBM miRNA-Seq recurrent_tumor 7316UP-1273-1104786 83ba4279-220e-4b18-9b10-8685b9f3632c_mirnaseq_gdc_realn.bam 257329223 BAM harmonized CPTAC3 5203d565-a9f5-4627-aa5f-a7cad0cb9b99 6c3ee52eb0e13f62771fccf56afde2e2 {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.miRNA-Seq.S20_L003_R1.T C224967 GBM miRNA-Seq tumor 7316UP-743-1104807 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 172958302 BAM S20_L003_R1 submitted_unaligned CPTAC3 8ae6c6ac-748f-4128-8d10-da7b703c9372 a06f15f14946a73288679000d92852a5 {"aliquot_tag": "ALQ_457645c3", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.miRNA-Seq.S39_L002_R1.R C224967 GBM miRNA-Seq recurrent_tumor 7316UP-1273-1104786 210817_UNC31-K00269_0302_AHLCTHBBXY_TCGAAG_S39_L002_R1_001.unaln.bam 236059410 BAM S39_L002_R1 submitted_unaligned CPTAC3 3df7ec78-3abf-45d4-8ac4-8a098c64eb96 6d4c2ff744f1e41dfa6b467eda5daebf {"aliquot_tag": "ALQ_a8382d92", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.miRNA-Seq.T.hg38 C224967 GBM miRNA-Seq tumor 7316UP-743-1104807 4a7a1f43-b4f6-44af-bf0e-7b839d7ada84_mirnaseq_gdc_realn.bam 193530803 BAM harmonized CPTAC3 de37781b-ef07-4921-8f08-cabea685470c 7209c129ce4abb3658b033b1471973ca {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.RNA-Seq.chimeric.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.chimeric.gdc_realn.bam 30323269 BAM chimeric harmonized CPTAC3 364f4faa-f00e-49ef-970b-37b841ef8b35 51d631323f2820e8f88b9744e122b220 {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.RNA-Seq.chimeric.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.chimeric.gdc_realn.bam 68534413 BAM chimeric harmonized CPTAC3 c3170a42-816c-4778-80c3-02858a103744 765e0827faa846346d0c3fbd4c142eea {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.RNA-Seq.genomic.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.genomic.gdc_realn.bam 10839337672 BAM genomic harmonized CPTAC3 acbd502e-6250-448e-86a7-fdb7b3eb3ce7 74b3b2983ccbcd8eb18299bc2ba233dc {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.RNA-Seq.genomic.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.genomic.gdc_realn.bam 10096056490 BAM genomic harmonized CPTAC3 fc2459b2-3b27-4621-b7f6-523d85a24427 ffcba4d32fc9f9338b25ab46a9392413 {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.RNA-Seq.S2_L001_R1.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R1_001.fastq.gz 3216445001 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 10469910-29ac-4d88-bc8c-42a9bd4cedf1 467e08a3038933a37fd6b3889602d72a {"aliquot_tag": "ALQ_457645c3", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.RNA-Seq.S2_L001_R2.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R2_001.fastq.gz 3726614863 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 e408bab8-2f30-42ba-9eeb-cc5c74ccfa0c b4887b93df864da46fa378a4374ab08e {"aliquot_tag": "ALQ_457645c3", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.RNA-Seq.S30_L008_R1.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 3738509596 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c e6b731b3f4fe3e5e4f97863922b138d2 {"aliquot_tag": "ALQ_a8382d92", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.RNA-Seq.S30_L008_R2.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4177127662 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 f544bc29-8e0c-4054-b284-10d737bbf7fa b157aee2da7fad0c0a0bb826f0f7bfb9 {"aliquot_tag": "ALQ_a8382d92", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.RNA-Seq.transcriptome.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.transcriptome.gdc_realn.bam 14270529357 BAM transcriptome harmonized CPTAC3 480838d5-3629-40fd-9a36-7e76fc4a1616 c3a7810d475dffac045842130b0dd8dd {"aliquot_tag": "ALQ_a8382d92", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.RNA-Seq.transcriptome.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.transcriptome.gdc_realn.bam 9732982069 BAM transcriptome harmonized CPTAC3 99b32129-2c2b-477b-bda2-938c9d72c35a 9472de58eda5e23228c617ed54d6d4ab {"aliquot_tag": "ALQ_457645c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.WGS.R C224967 GBM WGS recurrent_tumor 7316UP-1273-1105249 7316UP-1273-1105249.WholeGenome.RP-2158.bam 45552404417 BAM submitted_aligned CPTAC3 44bc125a-5a87-4639-be3a-23e0d55a33cd 78c6125ab72d5a8d2f9714c84c9617c0 {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.WGS.R.hg38 C224967 GBM WGS recurrent_tumor 7316UP-1273-1105249 8147fe67-4eaa-416d-b5cd-88979695055e_wgs_gdc_realn.bam 131842304442 BAM harmonized CPTAC3 fb85341b-132c-487f-b999-2ca9bcd90f2f 6b78aad0b7e9308d92f34eb696f712e6 {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.WXS.N C224967 GBM WXS blood_normal 7316UP-743-1105291 7316UP-743-1105291.WholeExome.RP-1303.bam 26575645784 BAM submitted_aligned CPTAC3 9d3f989c-48b1-449b-9552-e9f9c47fd3be a62b4c12bea5582bb8552bb220518bb7 {"aliquot_tag": "ALQ_c8fcb90c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C224967.WXS.N.hg38 C224967 GBM WXS blood_normal 7316UP-743-1105291 de2d3f21-8506-44b5-b2d4-194b8393dffa_wxs_gdc_realn.bam 36031479017 BAM harmonized CPTAC3 d02d8d09-e626-45ba-b5d5-a1910e38405f 9f2d73f961840586b098a2f2a47fa6be {"aliquot_tag": "ALQ_c8fcb90c", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C224967.WXS.R C224967 GBM WXS recurrent_tumor 7316UP-1273-1105249 7316UP-1273-1105249.WholeExome.RP-1303.bam 21705660534 BAM submitted_aligned CPTAC3 399d85bf-b1d9-4b95-bef3-dc2eea0211c5 38fc15dc9b25761a83a4c9b9561126e7 {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C224967.WXS.R.hg38 C224967 GBM WXS recurrent_tumor 7316UP-1273-1105249 8147fe67-4eaa-416d-b5cd-88979695055e_wxs_gdc_realn.bam 29632840126 BAM harmonized CPTAC3 3d802adb-e376-49a5-815e-6eaaab1b1acd c24aeb6189e9dbfd03fcbecc59320d0c {"aliquot_tag": "ALQ_2a45da81", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C224967.WXS.T C224967 GBM WXS tumor 7316UP-743-1105199 7316UP-743-1105199.WholeExome.RP-1303.bam 25027597697 BAM submitted_aligned CPTAC3 4099c82e-80c2-44c2-935b-44c9ded7faae 861fcc1589cfb9b045ba18b016b949cf {"aliquot_tag": "ALQ_c4618f67", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C224967.WXS.T.hg38 C224967 GBM WXS tumor 7316UP-743-1105199 aac08359-e9fe-4cf7-b5e1-12cc6dfa6cf4_wxs_gdc_realn.bam 33904639770 BAM harmonized CPTAC3 63f77087-cd4f-4b87-a777-57a55abe245f e8e1c40752d291ee6756e5ca3ae00d69 {"aliquot_tag": "ALQ_c4618f67", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C229764.DUP_48c7f5e2.MethArray.Green.R C229764 GBM Methylation_Array recurrent_tumor 7316UP-2110 205705520162_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 08f543cf-ce57-48bc-89c6-7b5051512dc1 b4be3e822496aa84c80a03a5ca68cf94 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.DUP_48c7f5e2.MethArray.Red.R C229764 GBM Methylation_Array recurrent_tumor 7316UP-2110 205705520162_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a03c58df-4dd2-41f7-8304-884fa6247a34 d650a3dd44d60aa7e78cf1d679363114 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.DUP_48c7f5e2.WGS.R C229764 GBM WGS recurrent_tumor 7316UP-2110 7316UP-2110.WholeGenome.RP-2158.bam 48573711632 BAM submitted_aligned CPTAC3 8fa375f8-bd23-40c7-98b1-7f120b10f23c 7ba18414fc18d12a46b4d05a3e3eeb64 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.DUP_48c7f5e2.WGS.R.hg38 C229764 GBM WGS recurrent_tumor 7316UP-2110 95dbfbd1-8615-4dc6-bae8-046c386d254b_wgs_gdc_realn.bam 144409383521 BAM harmonized CPTAC3 57f3f9b0-e62f-4314-9797-0f674d15c40f 0d639daa07fbea46f25c8e0d357b76a2 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.DUP_48c7f5e2.WXS.R C229764 GBM WXS recurrent_tumor 7316UP-2110 7316UP-2110.WholeExome.RP-1303.bam 24570787243 BAM submitted_aligned CPTAC3 efe58f46-f317-4800-8c7c-bf88eae7ee03 f2fee4a072bc7f5bfba52f7016bd838c {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.DUP_48c7f5e2.WXS.R.hg38 C229764 GBM WXS recurrent_tumor 7316UP-2110 95dbfbd1-8615-4dc6-bae8-046c386d254b_wxs_gdc_realn.bam 33106683650 BAM harmonized CPTAC3 8e1d0018-334e-42c4-89de-8f59de3b608a 89990717ccc6bf754176683548238638 {"aliquot_tag": "DUP_48c7f5e2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C229764.miRNA-Seq.R.hg38 C229764 GBM miRNA-Seq recurrent_tumor 7316UP-2110-1104776 b3193f92-588e-49d1-9ef3-5516f775b677_mirnaseq_gdc_realn.bam 335094068 BAM harmonized CPTAC3 eb2eec14-d46f-40b7-b0ef-095c418130f0 4665a796ea51addca039778cf5455feb {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.miRNA-Seq.S12_L001_R1.R C229764 GBM miRNA-Seq recurrent_tumor 7316UP-2110-1104776 210817_UNC31-K00269_0302_AHLCTHBBXY_CGGAAT_S12_L001_R1_001.unaln.bam 301422328 BAM S12_L001_R1 submitted_unaligned CPTAC3 107a7e23-4b45-431a-808f-f24ff8bfd125 e96783b1b540c2fd9a3012479e67afa4 {"aliquot_tag": "ALQ_f54fc92e", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.miRNA-Seq.S15_L001_R1.T C229764 GBM miRNA-Seq tumor 7316UP-109-1104779 210817_UNC31-K00269_0302_AHLCTHBBXY_CTCAGA_S15_L001_R1_001.unaln.bam 234792723 BAM S15_L001_R1 submitted_unaligned CPTAC3 fbc18909-5047-49b6-b0b4-575bf1147844 6aed41a40f6789c5c6e499bb19a26447 {"aliquot_tag": "ALQ_92a35999", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.miRNA-Seq.T.hg38 C229764 GBM miRNA-Seq tumor 7316UP-109-1104779 d8a8ed73-29de-4eb0-93b6-b19f0634c0f0_mirnaseq_gdc_realn.bam 272723935 BAM harmonized CPTAC3 ee020aff-f14e-4e47-b639-41a927d9d037 0c98af92d9e600ceb4cb12711ef3bc65 {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.RNA-Seq.chimeric.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.chimeric.gdc_realn.bam 41099436 BAM chimeric harmonized CPTAC3 8524b6c4-5cfd-4339-aad2-b5643be343c7 2ab92d76d71267e1510ea69afc5bc8b1 {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.RNA-Seq.chimeric.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.chimeric.gdc_realn.bam 55566293 BAM chimeric harmonized CPTAC3 d4f71f9c-c2fc-410c-8207-9bc3665f33d1 9e2e8273f38235b9c134d162ae098bc7 {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.RNA-Seq.genomic.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.genomic.gdc_realn.bam 6839473839 BAM genomic harmonized CPTAC3 84b8535b-d50c-4972-9a69-834b0c496868 55d1be4ec81cd6e50ff701dc177c2d18 {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.RNA-Seq.genomic.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.genomic.gdc_realn.bam 8876149296 BAM genomic harmonized CPTAC3 10e482d1-5af7-4a99-bce4-eb0341dfa3ed 936974b06774a305f77a3421636966ae {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.RNA-Seq.S11_L003_R1.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R1_001.fastq.gz 4111525485 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 32c3d5c1-3381-4ec0-b60d-414d6275cbf0 695953ee28e4d63be93336ca22fe364f {"aliquot_tag": "ALQ_92a35999", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.RNA-Seq.S11_L003_R2.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R2_001.fastq.gz 4429273944 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 fda85eb9-8e12-427b-87f4-72c840b59a49 2c91fc7eafa8b73bef772fb316b27f41 {"aliquot_tag": "ALQ_92a35999", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.RNA-Seq.S9_L003_R1.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R1_001.fastq.gz 3252755048 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 c530183b-3935-4d0a-a887-aa028b77f774 a39446603df4a6096eddf88efb543341 {"aliquot_tag": "ALQ_f54fc92e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.RNA-Seq.S9_L003_R2.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R2_001.fastq.gz 3465575112 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 d5fbc2da-be05-466a-9433-309fcd49c80e 9035d0f028ee3596d830327f8e5eb75b {"aliquot_tag": "ALQ_f54fc92e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.RNA-Seq.transcriptome.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.transcriptome.gdc_realn.bam 15046438368 BAM transcriptome harmonized CPTAC3 d6b35596-8b2e-47b4-93c4-15ce78106712 06e8e91c9c46a13bc8b6568f55156b7a {"aliquot_tag": "ALQ_f54fc92e", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.RNA-Seq.transcriptome.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.transcriptome.gdc_realn.bam 19591889660 BAM transcriptome harmonized CPTAC3 f4434914-5527-4693-a117-71220abe2e40 a45ca7726ee04f2009d145eee43b7158 {"aliquot_tag": "ALQ_92a35999", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.WGS.N C229764 GBM WGS blood_normal 7316UP-1359-1105275 7316UP-1359-1105275.WholeGenome.RP-2158.bam 53215888402 BAM submitted_aligned CPTAC3 b9ba5b0f-051d-4473-a57f-ce4c49cfd25e 96ebd239c14cb582fcd4ec7574b6dd86 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C229764.WGS.N.hg38 C229764 GBM WGS blood_normal 7316UP-1359-1105275 7733096d-86eb-4bc6-b8a6-95b571be3af6_wgs_gdc_realn.bam 156335496900 BAM harmonized CPTAC3 3f00fbf7-325a-4da0-b5bc-307b35475f41 14a63a441b8e3be7186fa01c9ef47098 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C229764.WGS.R C229764 GBM WGS recurrent_tumor 7316UP-2110-1105239 7316UP-2110-1105239.WholeGenome.RP-2158.bam 69328226067 BAM submitted_aligned CPTAC3 469debd9-3972-41fa-b086-a3f552d60a0a e90361cb358d4070175f584d720920ef {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.WGS.R.hg38 C229764 GBM WGS recurrent_tumor 7316UP-2110-1105239 bd5d6c5d-8def-4f58-a5c6-a9b29d75deee_wgs_gdc_realn.bam 197192726740 BAM harmonized CPTAC3 9c8669b6-ad42-4dd7-828e-b4e6cf6f227e 8a8acd9e330b6438b700f44928dfbbe9 {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.WGS.T C229764 GBM WGS tumor 7316UP-109-1105242 7316UP-109-1105242.WholeGenome.RP-2158.bam 50355188086 BAM submitted_aligned CPTAC3 4d268b30-5092-4aa4-a709-49ceb721bf33 0fd9b2d4d618dba2bef0f4624985a881 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.WGS.T.hg38 C229764 GBM WGS tumor 7316UP-109-1105242 ac8d4e2a-cbf6-4679-b022-ab0518e1ae21_wgs_gdc_realn.bam 153712017045 BAM harmonized CPTAC3 91eeaff0-8519-4a8f-9860-bddad9f65edc cf29132d69dd3f72d2bd741579bc5844 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.WXS.N C229764 GBM WXS blood_normal 7316UP-1359-1105275 7316UP-1359-1105275.WholeExome.RP-1303.bam 26629160944 BAM submitted_aligned CPTAC3 ba1c0111-e1d0-412a-b58a-ba69241486f7 1aa2fa4ce21dd64c0fc1c3d5947788c0 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C229764.WXS.N.hg38 C229764 GBM WXS blood_normal 7316UP-1359-1105275 7733096d-86eb-4bc6-b8a6-95b571be3af6_wxs_gdc_realn.bam 36069064590 BAM harmonized CPTAC3 b39d806b-6907-4b17-b822-b9f17b2d8be2 e5656236bbf156f7efeba41bd7f76bc3 {"aliquot_tag": "ALQ_588b400a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C229764.WXS.R C229764 GBM WXS recurrent_tumor 7316UP-2110-1105239 7316UP-2110-1105239.WholeExome.RP-1303.bam 32693049354 BAM submitted_aligned CPTAC3 9443852b-2959-4d43-8e1f-4e88b44427bd 67142e1828686f7de45067b876d9dd39 {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C229764.WXS.R.hg38 C229764 GBM WXS recurrent_tumor 7316UP-2110-1105239 bd5d6c5d-8def-4f58-a5c6-a9b29d75deee_wxs_gdc_realn.bam 44015856796 BAM harmonized CPTAC3 b4845ff0-b4f1-4eaf-8157-904e149293a7 4f03f98f942e8a7d260ab3a47cbc87ba {"aliquot_tag": "ALQ_bfebb435", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C229764.WXS.T C229764 GBM WXS tumor 7316UP-109-1105242 7316UP-109-1105242.WholeExome.RP-1303.bam 29536235729 BAM submitted_aligned CPTAC3 0483328a-3997-42e0-b9a3-b05d5c0b3caa dc050ffac908ccc496dab85013be2c25 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C229764.WXS.T.hg38 C229764 GBM WXS tumor 7316UP-109-1105242 ac8d4e2a-cbf6-4679-b022-ab0518e1ae21_wxs_gdc_realn.bam 40270433118 BAM harmonized CPTAC3 0858e1ec-6d27-4654-9a9d-ac8d08173e1a c86dea33b23533eb22572c0dabbd7507 {"aliquot_tag": "ALQ_902b765c", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C231855.DUP_40a9c1b9.MethArray.Green.T C231855 GBM Methylation_Array tumor 7316UP-160 205707890106_R01C01_Grn.idat 13677901 IDAT Green NA CPTAC3 0901786f-574b-4f04-b20f-757e7f2faf74 6e05a44e895b04ec3f8e5ccb721ed8c2 {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.DUP_40a9c1b9.MethArray.Red.T C231855 GBM Methylation_Array tumor 7316UP-160 205707890106_R01C01_Red.idat 13677901 IDAT Red NA CPTAC3 a5d3cfa1-7532-41cf-bcd2-143b08da96f2 a5ed924d837365764d706b862619dc05 {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.DUP_40a9c1b9.WGS.T C231855 GBM WGS tumor 7316UP-160 7316UP-160.WholeGenome.RP-2158.bam 52825456796 BAM submitted_aligned CPTAC3 f0e32f34-00b0-429a-b9fc-697388a7c224 63b095da1dde6e564e64d109d7bd66b4 {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.DUP_40a9c1b9.WGS.T.hg38 C231855 GBM WGS tumor 7316UP-160 8b5d164f-881e-476b-ad10-84e8b23a9601_wgs_gdc_realn.bam 161707686407 BAM harmonized CPTAC3 2ff2adc1-3b80-4db3-99ab-edb05cd0e375 16bea488d8e0569c670cb10a19a6980a {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.DUP_40a9c1b9.WXS.T C231855 GBM WXS tumor 7316UP-160 7316UP-160.WholeExome.RP-1303.bam 22236292610 BAM submitted_aligned CPTAC3 11d145b2-db2c-459a-aceb-db63d81a4a5e 1e9410e4143f1673a6d51d68c543d85d {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.DUP_40a9c1b9.WXS.T.hg38 C231855 GBM WXS tumor 7316UP-160 8b5d164f-881e-476b-ad10-84e8b23a9601_wxs_gdc_realn.bam 30332109330 BAM harmonized CPTAC3 aea7e706-e796-4b1f-bb99-40a333b400e9 e2d8ec7eb8780e225fc375bb47f9175b {"aliquot_tag": "DUP_40a9c1b9", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C231855.miRNA-Seq.R.hg38 C231855 GBM miRNA-Seq recurrent_tumor 7316UP-421-1104795 f2d89a7e-919f-44da-af58-f12a713869e9_mirnaseq_gdc_realn.bam 192906602 BAM harmonized CPTAC3 ecb6a23b-da26-42db-81d2-af65b3cc26c4 56152873e6ee151d34b5790b27fe20cb {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.miRNA-Seq.S11_L002_R1.T C231855 GBM miRNA-Seq tumor 7316UP-160-1104784 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L002_R1_001.unaln.bam 307910922 BAM S11_L002_R1 submitted_unaligned CPTAC3 2873f023-f443-477c-8520-be60df760482 e35100b6aeabb9d3a4c83c7f838f9e68 {"aliquot_tag": "ALQ_ca37fff7", "sample": "S11", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.miRNA-Seq.S23_L002_R1.R C231855 GBM miRNA-Seq recurrent_tumor 7316UP-421-1104795 210817_UNC31-K00269_0302_AHLCTHBBXY_ACTTGA_S23_L002_R1_001.unaln.bam 168987687 BAM S23_L002_R1 submitted_unaligned CPTAC3 06659363-cbdb-4a45-b54f-69521e2def39 b75a10cdd03feb013a83b8c074bfa780 {"aliquot_tag": "ALQ_cbece65b", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.miRNA-Seq.T.hg38 C231855 GBM miRNA-Seq tumor 7316UP-160-1104784 7458187d-8cc9-4c51-9ff8-e1a981b7b656_mirnaseq_gdc_realn.bam 355835909 BAM harmonized CPTAC3 1e7f70bd-a31e-4f0c-891b-e272aa2fbc16 33b5b1335e080c26ec4ac2249d3ffea2 {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.RNA-Seq.chimeric.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.chimeric.gdc_realn.bam 66296900 BAM chimeric harmonized CPTAC3 b0a9653e-ea87-44f0-bc39-006de70245a0 eeb8ff6a619a6ce74cf864b6691679d0 {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.RNA-Seq.chimeric.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.chimeric.gdc_realn.bam 74542577 BAM chimeric harmonized CPTAC3 3230e199-e328-4dfe-81c3-1dffe38d3f24 ded2738ecbe906ccc61480fed64d91a0 {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.RNA-Seq.genomic.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.genomic.gdc_realn.bam 8833797711 BAM genomic harmonized CPTAC3 6bcf1557-1dfe-44cb-a005-536aadf106be 731372c496b7bd8794a416a062e597d2 {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.RNA-Seq.genomic.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.genomic.gdc_realn.bam 10544458404 BAM genomic harmonized CPTAC3 d78dc8a2-5618-4c76-93c8-05c1ff4a893a d2f1d5a4dba4f633c5294c26d11561cf {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.RNA-Seq.S3_L001_R1.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R1_001.fastq.gz 3391269224 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5b018459-1fb0-458c-8d4b-40d6ace7089e ce026a24fc6e1bbe4c13f441f94f55da {"aliquot_tag": "ALQ_cbece65b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.RNA-Seq.S3_L001_R2.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R2_001.fastq.gz 3882186982 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 9d90d560-17cb-4038-a922-8e5f8d738b82 44abf091804b24627965df3cf9e17648 {"aliquot_tag": "ALQ_cbece65b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.RNA-Seq.S9_L003_R1.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R1_001.fastq.gz 4752824534 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 6a569c62-2dfe-4109-803d-dab5026bfec2 b78042be5bd11ead6f84cfc811983fd3 {"aliquot_tag": "ALQ_ca37fff7", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.RNA-Seq.S9_L003_R2.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R2_001.fastq.gz 5069843304 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 e487d435-f110-46da-9ed6-58814f3d33c4 8d70933e52650efd4db13d48eac69199 {"aliquot_tag": "ALQ_ca37fff7", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.RNA-Seq.transcriptome.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.transcriptome.gdc_realn.bam 9492637133 BAM transcriptome harmonized CPTAC3 ffb5246f-3957-4b18-bcd8-3c26805809d6 e8e082d79c8bca6322c8dc24caab1137 {"aliquot_tag": "ALQ_cbece65b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.RNA-Seq.transcriptome.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.transcriptome.gdc_realn.bam 14972339378 BAM transcriptome harmonized CPTAC3 4cf0db20-dff2-4549-b0b9-ae91e8307fce a1942cccb63ec600136bc3a23a4a1747 {"aliquot_tag": "ALQ_ca37fff7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.WGS.R C231855 GBM WGS recurrent_tumor 7316UP-421-1105260 7316UP-421-1105260.WholeGenome.RP-2158.bam 71075559854 BAM submitted_aligned CPTAC3 d3f53b40-80ff-4eb2-bbba-451850dcd22b 08eba3c821f43a3e34f3c5853b0cda05 {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.WGS.R.hg38 C231855 GBM WGS recurrent_tumor 7316UP-421-1105260 0a571249-9aa4-462a-97bc-b7e5ff23877c_wgs_gdc_realn.bam 210393794712 BAM harmonized CPTAC3 f57977b1-d154-4977-83a8-40a159f17710 fc48472567b8950e24723b0809ea2b87 {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.WXS.N C231855 GBM WXS blood_normal 7316UP-421-1105288 7316UP-421-1105288.WholeExome.RP-1303.bam 20989442407 BAM submitted_aligned CPTAC3 a5f3e504-6c0f-4d0a-87a1-3d084a2f2734 b3327cf39590ba0487c935545ebd4238 {"aliquot_tag": "ALQ_12310e29", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C231855.WXS.N.hg38 C231855 GBM WXS blood_normal 7316UP-421-1105288 3fe163be-784a-408f-b167-9b1f65f2221e_wxs_gdc_realn.bam 28435638577 BAM harmonized CPTAC3 d03b4742-4fce-4819-8017-5644f76432ac 414556d35f7f730a2041b0ff93670c9a {"aliquot_tag": "ALQ_12310e29", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C231855.WXS.R C231855 GBM WXS recurrent_tumor 7316UP-421-1105260 7316UP-421-1105260.WholeExome.RP-1303.bam 27632790176 BAM submitted_aligned CPTAC3 cf798c5b-546f-48b6-ac81-c41d4bf465a0 22481c96d46b469c8a3953bcc8afa9dc {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C231855.WXS.R.hg38 C231855 GBM WXS recurrent_tumor 7316UP-421-1105260 0a571249-9aa4-462a-97bc-b7e5ff23877c_wxs_gdc_realn.bam 37396260309 BAM harmonized CPTAC3 c1fafb36-a4b7-4d78-9e52-11ad1f7d350f 6bd4353a2744383b64e96a16116fe204 {"aliquot_tag": "ALQ_8269ab95", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C231855.WXS.T C231855 GBM WXS tumor 7316UP-160-1105247 7316UP-160-1105247.WholeExome.RP-1303.bam 23334674687 BAM submitted_aligned CPTAC3 379396e7-9602-4738-a39c-05ba14b6b2d8 7e8015254903fead24fa6d7edea66100 {"aliquot_tag": "ALQ_41fc44cf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C231855.WXS.T.hg38 C231855 GBM WXS tumor 7316UP-160-1105247 ca322924-b07a-4fbb-8634-78e26e197671_wxs_gdc_realn.bam 32063571055 BAM harmonized CPTAC3 f12a807d-d1e9-4c32-a4ac-798ff0359c82 d47422753e5092d8f1b139f6aede15c0 {"aliquot_tag": "ALQ_41fc44cf", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C234192.DUP_27ea3fbd.WGS.R C234192 GBM WGS recurrent_tumor 7316UP-1206-1105262 7316UP-1206-1105262.WholeGenome.RP-2158.bam 76244971420 BAM submitted_aligned CPTAC3 aa9a65b4-2314-476e-900f-53f5982d3ae4 735e0c01070a39b3ecca8bc118111c2d {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_27ea3fbd.WGS.R.hg38 C234192 GBM WGS recurrent_tumor 7316UP-1206-1105262 cc53cc56-d2d1-4e0d-9abb-fdebc31cfefb_wgs_gdc_realn.bam 233125734014 BAM harmonized CPTAC3 43a2c88a-f40a-46dc-a8ff-31e4865e89ae bba708aef1f6e6fa807f4644f51dfed0 {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_27ea3fbd.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-1206-1105262 7316UP-1206-1105262.WholeExome.RP-1303.bam 31598002776 BAM submitted_aligned CPTAC3 8486ea12-0703-402e-98fe-20dc5fe589ae 7846bc703606e7a3d76f523668914855 {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_27ea3fbd.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-1206-1105262 cc53cc56-d2d1-4e0d-9abb-fdebc31cfefb_wxs_gdc_realn.bam 43324496713 BAM harmonized CPTAC3 55283a5b-910b-4090-a30b-3cab97864ea2 39523c20b3470c0fdb633ecf8730020a {"aliquot_tag": "DUP_27ea3fbd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C234192.DUP_34cd9d6c.MethArray.Green.R C234192 GBM Methylation_Array recurrent_tumor 7316UP-386 205854140148_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b5a41b87-53b1-4836-a68e-b450b02d2f05 fb61820aaf852ce65f1276cafe4accc3 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_34cd9d6c.MethArray.Red.R C234192 GBM Methylation_Array recurrent_tumor 7316UP-386 205854140148_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 b0c6a30e-810a-46c3-bdcb-9391383b91b9 a22e676d136207cd14470f2255ad7f06 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_34cd9d6c.WGS.R C234192 GBM WGS recurrent_tumor 7316UP-386 7316UP-386.WholeGenome.RP-2158.bam 47559885675 BAM submitted_aligned CPTAC3 cf5bb143-0b74-4d0d-a847-0eb11c1ca7a1 745bef1e90150ca2b3396edc36ef0aa9 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_34cd9d6c.WGS.R.hg38 C234192 GBM WGS recurrent_tumor 7316UP-386 718fac36-5644-4dff-a838-c2722578ac31_wgs_gdc_realn.bam 139319538853 BAM harmonized CPTAC3 fa6f4cf6-3d89-48d3-8505-765cfdf77f96 eb0fbbfd2ffd7b38175d84bea23c3065 {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_34cd9d6c.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-386 7316UP-386.WholeExome.RP-1303.bam 22730648817 BAM submitted_aligned CPTAC3 443f69b6-ca13-48ca-934b-a1a8e5b89703 221351910a8a5d5bde697e227d49498a {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_34cd9d6c.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-386 718fac36-5644-4dff-a838-c2722578ac31_wxs_gdc_realn.bam 30881439246 BAM harmonized CPTAC3 3a5e6d4c-ea90-43d6-8f40-c8f954c75eef 76e6f6472697d9236c6dbc6d0f2e99bc {"aliquot_tag": "DUP_34cd9d6c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C234192.DUP_35bb8e11.miRNA-Seq.R.hg38 C234192 GBM miRNA-Seq recurrent_tumor 7316UP-386-1104808 e1a91e29-39a5-4a32-aac4-d926ddd3db07_mirnaseq_gdc_realn.bam 231162912 BAM harmonized CPTAC3 dcb136eb-e500-4a94-99e6-46f5cb0454e5 a2123427afbb9e65c18b0eabc9acad53 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_35bb8e11.miRNA-Seq.S21_L003_R1.R C234192 GBM miRNA-Seq recurrent_tumor 7316UP-386-1104808 210817_UNC31-K00269_0302_AHLCTHBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 210647428 BAM S21_L003_R1 submitted_unaligned CPTAC3 3c87754d-a3ec-49f7-99d8-93c5db1e5e67 4c4c10cad82d6465c4fb6d309880e984 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_35bb8e11.RNA-Seq.chimeric.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.chimeric.gdc_realn.bam 31769534 BAM chimeric harmonized CPTAC3 42eef9de-27b5-4b71-b183-3d9e68cb99aa 4b9446aec5b78898a2d22281cdc99a76 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_35bb8e11.RNA-Seq.genomic.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.genomic.gdc_realn.bam 10506958714 BAM genomic harmonized CPTAC3 c57c71d3-45fc-4889-a770-d67120fd12d2 415a222ba9ae8213add79f8242f7fca4 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_35bb8e11.RNA-Seq.S32_L008_R1.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 3276824441 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 7d500c68-fbb2-4d68-b501-7cca903b17cf 0cc8ed8d553275159584e75a2ebe6d27 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_35bb8e11.RNA-Seq.S32_L008_R2.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 3631457607 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 6df26d5c-8487-48eb-aa55-66cb6c2b7da0 4bfd931358597f98ebded555d321642d {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_35bb8e11.RNA-Seq.transcriptome.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.transcriptome.gdc_realn.bam 13160264268 BAM transcriptome harmonized CPTAC3 30296540-b3cb-40be-a6c2-5b5f7acf8fdd 35c7f8930ea1ef638db2441e276fdca1 {"aliquot_tag": "DUP_35bb8e11", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.DUP_a92ddca1.MethArray.Green.T C234192 GBM Methylation_Array tumor 7316UP-181 205705520023_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9087bd0c-870f-4f08-a08a-7b09d07ee992 6663b656283a87a3e3307ed37ab14b35 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.DUP_a92ddca1.MethArray.Red.T C234192 GBM Methylation_Array tumor 7316UP-181 205705520023_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 986b983e-2949-4203-8176-2dc0c973c368 5469b4f417044838242b046b3b69921d {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.DUP_a92ddca1.WGS.T C234192 GBM WGS tumor 7316UP-181 7316UP-181.WholeGenome.RP-2158.bam 56435788273 BAM submitted_aligned CPTAC3 9b1b261c-695e-4a48-a3ad-9d7ec0a8f963 2c55f98e0ec18b4b558106797bcbaf38 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.DUP_a92ddca1.WGS.T.hg38 C234192 GBM WGS tumor 7316UP-181 4eae5599-7c20-444f-8253-fc4a0195d96f_wgs_gdc_realn.bam 171448754175 BAM harmonized CPTAC3 9d005027-e1bb-44f6-9d63-70a019164acd f544e25249f474a9084bac6a3c8240e1 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.DUP_a92ddca1.WXS.T C234192 GBM WXS tumor 7316UP-181 7316UP-181.WholeExome.RP-1303.bam 22982636961 BAM submitted_aligned CPTAC3 4474df2a-caa8-4b06-898a-397c1ac6da64 2c5d61ed98dbb5fa832eee0c6954eb41 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.DUP_a92ddca1.WXS.T.hg38 C234192 GBM WXS tumor 7316UP-181 4eae5599-7c20-444f-8253-fc4a0195d96f_wxs_gdc_realn.bam 31626617554 BAM harmonized CPTAC3 391bf1c9-43e5-4e52-b602-a8014c059dbc 76722e1a544e5627eccf19f801801a39 {"aliquot_tag": "DUP_a92ddca1", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C234192.miRNA-Seq.R.hg38 C234192 GBM miRNA-Seq recurrent_tumor 7316UP-1206-1104797 48be9f1d-0af2-4679-bc13-5c2929c33e70_mirnaseq_gdc_realn.bam 396603027 BAM harmonized CPTAC3 cb180774-a0fd-4bc7-ac91-f39af7f22073 a136d3732bd08aecfc28bd6fe994c3e1 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.miRNA-Seq.S35_L002_R1.R C234192 GBM miRNA-Seq recurrent_tumor 7316UP-1206-1104797 210817_UNC31-K00269_0302_AHLCTHBBXY_TAGCTT_S35_L002_R1_001.unaln.bam 337424563 BAM S35_L002_R1 submitted_unaligned CPTAC3 da2d041c-64f8-43f6-a183-bd7e72cbf810 74ab7b7629739583f329f94ccc219e2e {"aliquot_tag": "ALQ_6e6f7273", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.miRNA-Seq.S3_L003_R1.T C234192 GBM miRNA-Seq tumor 7316UP-181-1104815 210817_UNC31-K00269_0302_AHLCTHBBXY_CAAAAG_S3_L003_R1_001.unaln.bam 364681995 BAM S3_L003_R1 submitted_unaligned CPTAC3 5a67cf00-8cc1-44c0-ae73-eea18f081b02 ae10d60d23e649c6352a416d05322297 {"aliquot_tag": "ALQ_6e1c17e5", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.miRNA-Seq.T.hg38 C234192 GBM miRNA-Seq tumor 7316UP-181-1104815 0e75fd15-2035-496d-9d58-9c7d3fc8b62b_mirnaseq_gdc_realn.bam 415908166 BAM harmonized CPTAC3 a204c481-32de-4cb2-a68e-79dc9a33d63a a520cc79b05f2e27019a745dac2114d9 {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.RNA-Seq.chimeric.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.chimeric.gdc_realn.bam 64226114 BAM chimeric harmonized CPTAC3 ca080da5-cc19-424e-92b4-2d71120af556 fe5c53ed91086e9539aab2b94d418407 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.RNA-Seq.chimeric.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.chimeric.gdc_realn.bam 51744846 BAM chimeric harmonized CPTAC3 28deee9d-5c29-41a3-b0a5-ce3789712717 4d490bc5350b7eb5bda84c82e339072e {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.RNA-Seq.genomic.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.genomic.gdc_realn.bam 8269927080 BAM genomic harmonized CPTAC3 158def60-2226-4585-a3e7-e68c551de793 2c7f5366754af856bfc9c5350e0668f1 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.RNA-Seq.genomic.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.genomic.gdc_realn.bam 9553842168 BAM genomic harmonized CPTAC3 0acda018-6eab-45bb-ac39-40f65cecdcd7 3413c73d3058ad4f0e65d19f7f1ef856 {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.RNA-Seq.S12_L003_R1.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R1_001.fastq.gz 3736027921 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 c50ba18b-ea56-4579-a48e-bc82936d96c8 0f714076ff8ce7e1a1fdb40ff2c8f93d {"aliquot_tag": "ALQ_6e6f7273", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.RNA-Seq.S12_L003_R2.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R2_001.fastq.gz 4022993051 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 e1e78f00-8882-40ae-aba4-7ccfd12a4996 e55040492dc7e715c3103a443343026f {"aliquot_tag": "ALQ_6e6f7273", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.RNA-Seq.S29_L008_R1.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 3615865895 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 928d940f-3a8a-43aa-894f-792e0d1d5468 cbc162fede09e521a538235c9ea9d4e6 {"aliquot_tag": "ALQ_6e1c17e5", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.RNA-Seq.S29_L008_R2.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 3963289098 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 f419b308-3b44-43cd-8515-43e351c9b2a9 00b70bc3b175d5dcbc54737be6bc11ea {"aliquot_tag": "ALQ_6e1c17e5", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.RNA-Seq.transcriptome.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.transcriptome.gdc_realn.bam 13720404909 BAM transcriptome harmonized CPTAC3 479bb3b7-d7f0-4de3-b9ba-7d3da1d21516 d7a00bb07d8960f49a8c454651aa1379 {"aliquot_tag": "ALQ_6e6f7273", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.RNA-Seq.transcriptome.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.transcriptome.gdc_realn.bam 15348891760 BAM transcriptome harmonized CPTAC3 1377c10c-a411-47af-9326-0de1286ffd71 fc9288ca4f4cf94df3f60b643a7af441 {"aliquot_tag": "ALQ_6e1c17e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.WXS.N C234192 GBM WXS blood_normal 7316UP-386-1105286 7316UP-386-1105286.WholeExome.RP-1303.bam 24199574526 BAM submitted_aligned CPTAC3 f7aa4be1-0506-4b92-ab15-2c6aa8e84e10 a76ba70df3378021a952eaf51dd21279 {"aliquot_tag": "ALQ_aff1cbad", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C234192.WXS.N.hg38 C234192 GBM WXS blood_normal 7316UP-386-1105286 d8eaf68c-8262-4df9-86f0-853fe53f50da_wxs_gdc_realn.bam 32914041533 BAM harmonized CPTAC3 a4bab68e-9662-4e8a-8b06-8db9204db099 c7322cd652b839f68ee53126ca73de06 {"aliquot_tag": "ALQ_aff1cbad", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C234192.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-386-1105200 7316UP-386-1105200.WholeExome.RP-1303.bam 20806055854 BAM submitted_aligned CPTAC3 7da8daf1-63dc-454c-beae-7c7ddd6a8500 daa94493f545d94e1f2811ebc4522d34 {"aliquot_tag": "ALQ_8e4be490", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C234192.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-386-1105200 627c4b60-2f6f-4fbf-aed9-2d2d85c7bf5e_wxs_gdc_realn.bam 28225214010 BAM harmonized CPTAC3 a1d7b018-9c49-4102-9ddc-e9dbc8849188 090bdd835c10172092c05858f7790938 {"aliquot_tag": "ALQ_8e4be490", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C234192.WXS.T C234192 GBM WXS tumor 7316UP-181-1105194 7316UP-181-1105194.WholeExome.RP-1303.bam 25971653894 BAM submitted_aligned CPTAC3 b6c516d7-ef12-420e-8bf5-bde06419732f 6c206fd9b0e7b3d6819cd203cea7f2d5 {"aliquot_tag": "ALQ_66aff191", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C234192.WXS.T.hg38 C234192 GBM WXS tumor 7316UP-181-1105194 d774c07e-df68-4037-983e-1b21d267226b_wxs_gdc_realn.bam 35443786397 BAM harmonized CPTAC3 00d428d0-e8fc-4662-a0fa-cabc09e83c20 1aaf8e61a78f3f0f3751fa2e5c9b703e {"aliquot_tag": "ALQ_66aff191", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C2415597.DUP_6b347d64.WGS.T C2415597 GBM WGS tumor 7316UP-3213 7316UP-3213.WholeGenome.RP-2158.bam 46717989960 BAM submitted_aligned CPTAC3 6d9c3282-901f-4e5d-b88d-83dcb8420cf5 6af921d98ab4e2a69de87a906e701282 {"aliquot_tag": "DUP_6b347d64", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.DUP_6b347d64.WGS.T.hg38 C2415597 GBM WGS tumor 7316UP-3213 756fcc28-8e14-4f0e-8bf7-183faf9eac38_wgs_gdc_realn.bam 125043248439 BAM harmonized CPTAC3 80a726e3-4517-48d1-ae34-183300dc3541 1f617c5562eaf117d5cdc534fdf5aab6 {"aliquot_tag": "DUP_6b347d64", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.DUP_9de3473e.MethArray.Green.R C2415597 GBM Methylation_Array recurrent_tumor 7316UP-3301 205854120012_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 761bb9fa-b650-47b4-b493-c99cee85e208 2e05a5f0c43a60872a00d9b838abc221 {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.DUP_9de3473e.MethArray.Red.R C2415597 GBM Methylation_Array recurrent_tumor 7316UP-3301 205854120012_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2d4a84dc-f721-4129-97a9-a5c795530243 58cf9a92852a304891bfa66e2e8053dd {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.DUP_9de3473e.WGS.R C2415597 GBM WGS recurrent_tumor 7316UP-3301 7316UP-3301.WholeGenome.RP-2158.bam 40445705826 BAM submitted_aligned CPTAC3 5653b18d-31d5-42b5-95f8-94f92d8a9534 13df5b4dca993f2a65df41e61a738b78 {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.DUP_9de3473e.WGS.R.hg38 C2415597 GBM WGS recurrent_tumor 7316UP-3301 f8beab6f-a02c-4808-9525-1f031d13e85d_wgs_gdc_realn.bam 123926313636 BAM harmonized CPTAC3 da2fff2b-dc60-4c30-a008-70f698887d99 e5f2dfd9a39022a1645ade71c3d743fe {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.DUP_9de3473e.WXS.R C2415597 GBM WXS recurrent_tumor 7316UP-3301 7316UP-3301.WholeExome.RP-1303.bam 24074428846 BAM submitted_aligned CPTAC3 f020ea7e-b765-4680-bb04-a5d01cbb7445 fe3f5c635c9bb25c77c6e6c578813929 {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.DUP_9de3473e.WXS.R.hg38 C2415597 GBM WXS recurrent_tumor 7316UP-3301 f8beab6f-a02c-4808-9525-1f031d13e85d_wxs_gdc_realn.bam 32493296590 BAM harmonized CPTAC3 aeff0d2c-a961-4604-a89b-00568dd205d5 8c535ab1fbb64a874d9fa5d0babb0c1c {"aliquot_tag": "DUP_9de3473e", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C2415597.miRNA-Seq.R.hg38 C2415597 GBM miRNA-Seq recurrent_tumor 7316UP-3301-1104810 cc7c9eed-29f3-4a25-864d-4cd6f8071e96_mirnaseq_gdc_realn.bam 299239405 BAM harmonized CPTAC3 52ea6f91-1b1c-4c5a-b03e-81daa41ef9c0 772343054668900601a8cd5249c5e0ae {"aliquot_tag": "ALQ_7a5a0673", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.miRNA-Seq.S16_L003_R1.R C2415597 GBM miRNA-Seq recurrent_tumor 7316UP-3301-1104810 210817_UNC31-K00269_0302_AHLCTHBBXY_GAGTGG_S16_L003_R1_001.unaln.bam 261418307 BAM S16_L003_R1 submitted_unaligned CPTAC3 7fc389da-b7fc-4765-8e7b-78427f94fb81 422729d1f363c41e592fc0d92b09c7e5 {"aliquot_tag": "ALQ_7a5a0673", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.miRNA-Seq.S45_L003_R1.T C2415597 GBM miRNA-Seq tumor 7316UP-3213-1104802 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGTCA_S45_L003_R1_001.unaln.bam 221800320 BAM S45_L003_R1 submitted_unaligned CPTAC3 8246c90e-8b94-45c1-b838-4e352e69693a 0a1226bc33395cd83cf79a7b62c24796 {"aliquot_tag": "ALQ_8df5ca66", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.miRNA-Seq.T.hg38 C2415597 GBM miRNA-Seq tumor 7316UP-3213-1104802 356c884a-2197-4da2-89eb-88f60c882772_mirnaseq_gdc_realn.bam 252996886 BAM harmonized CPTAC3 a5e2090f-65d3-4ba3-adff-47f4294e7c92 9b8bd399dcb13d3afdad40bb58350b76 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.RNA-Seq.chimeric.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.chimeric.gdc_realn.bam 51464968 BAM chimeric harmonized CPTAC3 259f1515-9d2f-40a8-ac50-3739e6673220 21881365e78583ef786aa00948af7f53 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.RNA-Seq.genomic.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.genomic.gdc_realn.bam 9463100178 BAM genomic harmonized CPTAC3 81dcb229-7581-4325-a20f-08e0b18337d8 2964a452cf11a7077bbd99c19bd352c6 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.RNA-Seq.S15_L004_R1.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R1_001.fastq.gz 4016813028 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 65a4c75a-7f0b-440c-92db-a907010614d1 2ea4eaa426378eb26463e947e5b887eb {"aliquot_tag": "ALQ_8df5ca66", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.RNA-Seq.S15_L004_R2.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R2_001.fastq.gz 4342338020 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 bb7aa747-60b6-4342-aaa4-f076f360b67d 846577caa92152b93354ad27ef5579b6 {"aliquot_tag": "ALQ_8df5ca66", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.RNA-Seq.transcriptome.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.transcriptome.gdc_realn.bam 15629869679 BAM transcriptome harmonized CPTAC3 300ed4b2-5404-485b-bc6d-343f79caa015 2bdfc7ed2d2664edecb9ae74a1f921b1 {"aliquot_tag": "ALQ_8df5ca66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.WGS.N C2415597 GBM WGS blood_normal 7316UP-3213-1105205 7316UP-3213-1105205.WholeGenome.RP-2158.bam 50217161109 BAM submitted_aligned CPTAC3 0624d075-1b65-4bab-b6f2-1c9e0a21b6b4 81e1fe5d38e97c7e4c065c12a2fe6c45 {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C2415597.WGS.N.hg38 C2415597 GBM WGS blood_normal 7316UP-3213-1105205 919d4703-3f74-4005-8527-b799c88af446_wgs_gdc_realn.bam 151891127132 BAM harmonized CPTAC3 81a1a51b-92a2-4934-b3c7-21d141f6e0c3 f432f85771335baa303dbae8b0665782 {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C2415597.WGS.R C2415597 GBM WGS recurrent_tumor 7316UP-3301-1105203 7316UP-3301-1105203.WholeGenome.RP-2158.bam 55818050597 BAM submitted_aligned CPTAC3 e18c60c3-d0db-4475-ae0d-4c9908273151 76953b913614937c1c73ce8772320fbc {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.WGS.R.hg38 C2415597 GBM WGS recurrent_tumor 7316UP-3301-1105203 a2b4abb1-839e-4763-aa82-c754f118b220_wgs_gdc_realn.bam 167438335099 BAM harmonized CPTAC3 6ca6bc61-c0ba-40ab-b75f-a5bb2602af39 3279499b425a35ba86b1f2ee34922f9f {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.WXS.N C2415597 GBM WXS blood_normal 7316UP-3213-1105205 7316UP-3213-1105205.WholeExome.RP-1303.bam 26839308775 BAM submitted_aligned CPTAC3 00118ebe-547b-43c0-b0ef-8fd023ad31cd 645c7a2b32506b9b20217d48cf506f36 {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C2415597.WXS.N.hg38 C2415597 GBM WXS blood_normal 7316UP-3213-1105205 919d4703-3f74-4005-8527-b799c88af446_wxs_gdc_realn.bam 36750876656 BAM harmonized CPTAC3 dce2d5b9-9319-4e33-8a41-b9ead0147389 293c62a82a1a6e3e665cc6d5500e38de {"aliquot_tag": "ALQ_a6babd76", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C2415597.WXS.R C2415597 GBM WXS recurrent_tumor 7316UP-3301-1105203 7316UP-3301-1105203.WholeExome.RP-1303.bam 24495516950 BAM submitted_aligned CPTAC3 bf176280-c535-4b55-b936-21e7fedcb5de 92171bf6ca581390405d7ada7010b3e6 {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C2415597.WXS.R.hg38 C2415597 GBM WXS recurrent_tumor 7316UP-3301-1105203 a2b4abb1-839e-4763-aa82-c754f118b220_wxs_gdc_realn.bam 33287969940 BAM harmonized CPTAC3 40466bdf-bea3-4d9a-92de-729418cd7304 bb271aa6e6c20f2606d25f0eef82c8bf {"aliquot_tag": "ALQ_4f63843b", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C2415597.WXS.T C2415597 GBM WXS tumor 7316UP-3213-1105267 7316UP-3213-1105267.WholeExome.RP-1303.bam 22767710482 BAM submitted_aligned CPTAC3 0abd93c6-12d9-44b5-8d34-77397cbce77f 2d1d773c3bfee1ef5b9471f8f0714c50 {"aliquot_tag": "ALQ_1eee7bdc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C2415597.WXS.T.hg38 C2415597 GBM WXS tumor 7316UP-3213-1105267 bc166e0c-63e2-409c-a09f-7100fc4d0399_wxs_gdc_realn.bam 30930941832 BAM harmonized CPTAC3 d7016be0-b5fd-4b35-bfcb-b9f68116a669 727548c240b744043835255b03c65b9b {"aliquot_tag": "ALQ_1eee7bdc", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C243048.DUP_94a7b89d.MethArray.Green.T C243048 GBM Methylation_Array tumor 7316UP-213 205555380040_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 52b82f22-4b5b-42a6-9fc3-77dd32a3f8f7 bb109d79b16ccdaccb28ac0e25dc0a28 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.DUP_94a7b89d.MethArray.Red.T C243048 GBM Methylation_Array tumor 7316UP-213 205555380040_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 685bb2b2-efbd-4687-b197-07900da31d53 9c96e31e74e37d97a3f3045190d6bce7 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.DUP_94a7b89d.WGS.T C243048 GBM WGS tumor 7316UP-213 7316UP-213.WholeGenome.RP-2158.bam 61469132170 BAM submitted_aligned CPTAC3 f60141d2-88a5-4976-9b89-ab2648c18585 321bfdce2e3950202d1dce683a9d22d5 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.DUP_94a7b89d.WGS.T.hg38 C243048 GBM WGS tumor 7316UP-213 e4e6f65e-c590-48d7-8fba-1bfc0f10d029_wgs_gdc_realn.bam 186367798316 BAM harmonized CPTAC3 fc5d3bd7-69e2-435f-b278-290e6237aa47 d796aafe8acba81e478c8ead8868d9f8 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.DUP_94a7b89d.WXS.T C243048 GBM WXS tumor 7316UP-213 7316UP-213.WholeExome.RP-1303.bam 23332361777 BAM submitted_aligned CPTAC3 952c667a-4096-42a6-892b-d0e81731560f d59403f95ea36fb092e55b68f82e9278 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.DUP_94a7b89d.WXS.T.hg38 C243048 GBM WXS tumor 7316UP-213 e4e6f65e-c590-48d7-8fba-1bfc0f10d029_wxs_gdc_realn.bam 31637926754 BAM harmonized CPTAC3 ba5c13e9-a560-4436-90f2-011d77ee7531 55f5ee36af09a09db0b8b44f2809c2e8 {"aliquot_tag": "DUP_94a7b89d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C243048.miRNA-Seq.R.hg38 C243048 GBM miRNA-Seq recurrent_tumor 7316UP-1282-1104796 d05db3d5-b6be-4234-a3d2-7082bf8fa3d1_mirnaseq_gdc_realn.bam 322382405 BAM harmonized CPTAC3 b2965833-263a-4522-8383-619c45de06de c3f9e5b4f3657c05e5d8061cea10507b {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.miRNA-Seq.S13_L002_R1.R C243048 GBM miRNA-Seq recurrent_tumor 7316UP-1282-1104796 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L002_R1_001.unaln.bam 283713764 BAM S13_L002_R1 submitted_unaligned CPTAC3 03d33d85-051a-47ae-9c8b-b89b78fd4193 e1a8739e309877b12cafb4bcc0635e69 {"aliquot_tag": "ALQ_5753531d", "sample": "S13", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.miRNA-Seq.S36_L002_R1.T C243048 GBM miRNA-Seq tumor 7316UP-213-1104783 210817_UNC31-K00269_0302_AHLCTHBBXY_TATAAT_S36_L002_R1_001.unaln.bam 247388747 BAM S36_L002_R1 submitted_unaligned CPTAC3 596d52ea-e0db-433d-a082-0ea1d6919f9b 9da4910950727769133ad013195fddd9 {"aliquot_tag": "ALQ_16e02be9", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.miRNA-Seq.T.hg38 C243048 GBM miRNA-Seq tumor 7316UP-213-1104783 5a9c3046-135c-42ca-87c0-9e0456e85741_mirnaseq_gdc_realn.bam 276549197 BAM harmonized CPTAC3 d4df28d9-e66c-43a3-b2ae-a570abb38f71 3e54ecac5930fa3621dddc1de38368b4 {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.RNA-Seq.chimeric.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.chimeric.gdc_realn.bam 118922839 BAM chimeric harmonized CPTAC3 ccea4c60-5922-42dc-975c-9ab3d4ae1b6e d0e2e69c4b7621f9ed5cf2c926c8da49 {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.RNA-Seq.chimeric.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.chimeric.gdc_realn.bam 150848868 BAM chimeric harmonized CPTAC3 fcea2879-a76b-4382-bff1-6ee2e8f2a204 0aaef53ddd596db7d8f2eacfc809ff5e {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.RNA-Seq.genomic.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.genomic.gdc_realn.bam 8787059735 BAM genomic harmonized CPTAC3 2d6b8c8a-4796-4ae3-a41a-8c406f5f01dd 2aa4ff0e257c08aa8d657c441a29697e {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.RNA-Seq.genomic.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.genomic.gdc_realn.bam 9759936611 BAM genomic harmonized CPTAC3 822ba9f2-f945-486f-b42a-3e644ed48a6f 7a95e0fb48216a429726d96bf6752d02 {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.RNA-Seq.S10_L003_R1.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R1_001.fastq.gz 3441784538 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 363afde2-4960-4b58-9fb5-783487373231 93559bf7620c9800fea14ec277199af0 {"aliquot_tag": "ALQ_5753531d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.RNA-Seq.S10_L003_R2.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R2_001.fastq.gz 3779949435 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 94c8d23c-057f-4075-9b03-ebddc6c46e7c 3f85268ab56b70853e9635c77985f37c {"aliquot_tag": "ALQ_5753531d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.RNA-Seq.S28_L007_R1.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R1_001.fastq.gz 4481092171 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 098febb3-ede7-4533-b9f9-043c8d664e30 90390ef8dce83b1459486e2e9262deca {"aliquot_tag": "ALQ_16e02be9", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.RNA-Seq.S28_L007_R2.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R2_001.fastq.gz 4627017636 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 c7aab69b-f720-4820-9589-e1e033ef3ee3 2b427354fd9539ad44c24001b3e06ef1 {"aliquot_tag": "ALQ_16e02be9", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.RNA-Seq.transcriptome.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.transcriptome.gdc_realn.bam 9875620470 BAM transcriptome harmonized CPTAC3 90a85fcb-025e-46eb-9afc-22cf1846d9a3 9fd822ea75aad294c3d89acc88f0ce2b {"aliquot_tag": "ALQ_5753531d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.RNA-Seq.transcriptome.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.transcriptome.gdc_realn.bam 16610767095 BAM transcriptome harmonized CPTAC3 53c57a7e-e839-47be-bf28-ab94eb0bcb4f cb28b5b4f516a8414de224c1eccc16ef {"aliquot_tag": "ALQ_16e02be9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.WGS.N C243048 GBM WGS blood_normal 7316UP-1282-1105206 7316UP-1282-1105206.WholeGenome.RP-2158.bam 45626778138 BAM submitted_aligned CPTAC3 27ab3f0c-0f11-47a1-a9db-7d4672351791 22e72368489fa70abf16f8c73b729136 {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C243048.WGS.N.hg38 C243048 GBM WGS blood_normal 7316UP-1282-1105206 09888360-288f-45c9-9786-c44e6b9d9b58_wgs_gdc_realn.bam 138983449186 BAM harmonized CPTAC3 f5977d12-989d-4216-a674-474170a62e63 ca24f9765b5b07acf1d5554a81a4eb31 {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C243048.WGS.R C243048 GBM WGS recurrent_tumor 7316UP-1282-1105261 7316UP-1282-1105261.WholeGenome.RP-2158.bam 42877964474 BAM submitted_aligned CPTAC3 72db3c9f-efad-4791-b6d5-eec918651a42 28c94287dfe51f64cb70f4b7cccccd6a {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.WGS.R.hg38 C243048 GBM WGS recurrent_tumor 7316UP-1282-1105261 7a0bdee2-9e09-4c49-b4bb-34e1b8ca7d0c_wgs_gdc_realn.bam 123519800289 BAM harmonized CPTAC3 d38bdf35-5960-4c0c-963e-00dd73d155ef 6bb3fe974f58278c9b24b2dbfa6194e0 {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.WGS.T C243048 GBM WGS tumor 7316UP-213-1105246 7316UP-213-1105246.WholeGenome.RP-2158.bam 52268981914 BAM submitted_aligned CPTAC3 142d30eb-d2e2-4c33-8414-f2e9c84866ed 0d322df9cea5e94661c1167f487c7ecb {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.WGS.T.hg38 C243048 GBM WGS tumor 7316UP-213-1105246 6c5fd8de-99ba-4d63-8dd6-7587d7e72478_wgs_gdc_realn.bam 151231520143 BAM harmonized CPTAC3 e7f1591c-6ecb-4af1-a23d-5a38754f57b9 18e114022f5d853343634563f5008c82 {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.WXS.N C243048 GBM WXS blood_normal 7316UP-1282-1105206 7316UP-1282-1105206.WholeExome.RP-1303.bam 20741894205 BAM submitted_aligned CPTAC3 115a4ff0-cdd2-416e-95a5-1d5cf3fc1fb8 eca3dbe940600a2c789d0e3be9e93d3d {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C243048.WXS.N.hg38 C243048 GBM WXS blood_normal 7316UP-1282-1105206 09888360-288f-45c9-9786-c44e6b9d9b58_wxs_gdc_realn.bam 28402330953 BAM harmonized CPTAC3 8a82aa6f-8b08-4afa-8518-9a26dd06c832 2452f459bd2df60492cbba0c8d19887c {"aliquot_tag": "ALQ_38e64dda", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C243048.WXS.R C243048 GBM WXS recurrent_tumor 7316UP-1282-1105261 7316UP-1282-1105261.WholeExome.RP-1303.bam 25962713150 BAM submitted_aligned CPTAC3 cbd7c1e2-4e4a-42d8-9344-eb10d2c05922 4f05bbdb3b13dd01e751614a274e12ae {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243048.WXS.R.hg38 C243048 GBM WXS recurrent_tumor 7316UP-1282-1105261 7a0bdee2-9e09-4c49-b4bb-34e1b8ca7d0c_wxs_gdc_realn.bam 35071713175 BAM harmonized CPTAC3 52e8d865-92af-463f-8d7e-5c5580d8b31f 0e7c44d3c37b05aead22814ddbb5fa68 {"aliquot_tag": "ALQ_f0d87fff", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C243048.WXS.T C243048 GBM WXS tumor 7316UP-213-1105246 7316UP-213-1105246.WholeExome.RP-1303.bam 29270789494 BAM submitted_aligned CPTAC3 13cd0048-3145-4c19-be89-24bde2ca1da6 3d5ce2dab2f7a3db785e00a38c6a7b62 {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243048.WXS.T.hg38 C243048 GBM WXS tumor 7316UP-213-1105246 6c5fd8de-99ba-4d63-8dd6-7587d7e72478_wxs_gdc_realn.bam 39637473887 BAM harmonized CPTAC3 8bdfe531-ae92-49f4-87c0-02ee2ad09779 43befd5e6a5d038398510680d7bd10b5 {"aliquot_tag": "ALQ_744835e4", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C243909.DUP_74725183.MethArray.Green.T C243909 GBM Methylation_Array tumor 7316UP-219 205705520032_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6e3cf174-072b-459b-9eda-bff7d753af77 86b3ef18a85c1b9017470f67d5b9ac87 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.DUP_74725183.MethArray.Red.T C243909 GBM Methylation_Array tumor 7316UP-219 205705520032_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 0fbba5f6-90e0-47b5-96af-27f89ed93727 10000caf15718550a3869d169e189168 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.DUP_74725183.WGS.T C243909 GBM WGS tumor 7316UP-219 7316UP-219.WholeGenome.RP-2158.bam 52714327427 BAM submitted_aligned CPTAC3 c5ffcd00-ea30-4616-8b67-a26c7fea6802 e28ddb74754aaa304a972daebc9b6f05 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.DUP_74725183.WGS.T.hg38 C243909 GBM WGS tumor 7316UP-219 d013c55d-d3bd-488f-95cd-6c6e9228d817_wgs_gdc_realn.bam 154834136196 BAM harmonized CPTAC3 17a9a485-58c1-4724-a7ca-62cdbceabac0 520bd3d14a159061e99e55308130745c {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.DUP_74725183.WXS.T C243909 GBM WXS tumor 7316UP-219 7316UP-219.WholeExome.RP-1303.bam 27485029046 BAM submitted_aligned CPTAC3 65aea2ff-8477-463c-91eb-14b62c217e27 1f55e2e7a4d0da953e44275b63f1d071 {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.DUP_74725183.WXS.T.hg38 C243909 GBM WXS tumor 7316UP-219 d013c55d-d3bd-488f-95cd-6c6e9228d817_wxs_gdc_realn.bam 37111751144 BAM harmonized CPTAC3 fff94d78-afc1-4c90-9e46-7d90e2f05b5f 0b4982a9759a847be66a9571c3a911af {"aliquot_tag": "DUP_74725183", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C243909.DUP_a88bda53.MethArray.Green.R C243909 GBM Methylation_Array recurrent_tumor 7316UP-485 205854150029_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 34c8c910-6b6c-4c28-99b9-b40ec9783c89 28ebf2522af1a8d5d69904acda1cc70d {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.DUP_a88bda53.MethArray.Red.R C243909 GBM Methylation_Array recurrent_tumor 7316UP-485 205854150029_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 53f3efef-5605-48f6-9ec1-e5bccfb0c938 a9cd7bc80b05ac7c912d1105f4112a97 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.DUP_a88bda53.WGS.R C243909 GBM WGS recurrent_tumor 7316UP-485 7316UP-485.WholeGenome.RP-2158.bam 56426148983 BAM submitted_aligned CPTAC3 e62472d9-0680-4d19-be0f-59087d3ae5d8 77ee92da66a3ddd288a209ebfbc82a85 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.DUP_a88bda53.WGS.R.hg38 C243909 GBM WGS recurrent_tumor 7316UP-485 1dec43db-5c7f-401c-a558-bb9ba1bbec31_wgs_gdc_realn.bam 169112842557 BAM harmonized CPTAC3 50e449fa-badd-4c24-9f55-27d5ee51f76d bf739d1963fddfbb8fa5c3ff980a3fc2 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.DUP_a88bda53.WXS.R C243909 GBM WXS recurrent_tumor 7316UP-485 7316UP-485.WholeExome.RP-1303.bam 14857742498 BAM submitted_aligned CPTAC3 1df0c862-5d9b-4eef-948d-684bd79c2ffb eb3b8d7d6c31c06329fbca0add2a2928 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.DUP_a88bda53.WXS.R.hg38 C243909 GBM WXS recurrent_tumor 7316UP-485 1dec43db-5c7f-401c-a558-bb9ba1bbec31_wxs_gdc_realn.bam 20832210812 BAM harmonized CPTAC3 deabc5a0-a029-492c-ad8a-ee4a70087d40 efefa8ca6213f004af7e64ae8d832345 {"aliquot_tag": "DUP_a88bda53", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C243909.miRNA-Seq.R.hg38 C243909 GBM miRNA-Seq recurrent_tumor 7316UP-485-1104772 9c13cdcc-aaa0-4d11-92a0-c625ed228c94_mirnaseq_gdc_realn.bam 341848089 BAM harmonized CPTAC3 cc79e105-6d2b-45a1-8089-e59ed173e222 079add719e971dff6333e5332f064d80 {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.miRNA-Seq.S14_L001_R1.T C243909 GBM miRNA-Seq tumor 7316UP-219-1104778 210817_UNC31-K00269_0302_AHLCTHBBXY_CTATAC_S14_L001_R1_001.unaln.bam 178291052 BAM S14_L001_R1 submitted_unaligned CPTAC3 1f9bdb50-0ce4-4b83-8374-4ba3e3283372 c65997746e5f7504bab4be6708c94591 {"aliquot_tag": "ALQ_93846430", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.miRNA-Seq.S8_L001_R1.R C243909 GBM miRNA-Seq recurrent_tumor 7316UP-485-1104772 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L001_R1_001.unaln.bam 299105296 BAM S8_L001_R1 submitted_unaligned CPTAC3 fd7b50a5-0baa-47c1-806e-57a047867d69 d35f4485d829746c2cf806489f48a013 {"aliquot_tag": "ALQ_81c59fb3", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.miRNA-Seq.T.hg38 C243909 GBM miRNA-Seq tumor 7316UP-219-1104778 d01c8619-4be8-4420-ada0-60392a580e7f_mirnaseq_gdc_realn.bam 192115100 BAM harmonized CPTAC3 1d12e2ba-27ce-4f32-995c-67b4d1410c50 1ae9b4f88f8fc6b7e903b0454c8cec91 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.RNA-Seq.chimeric.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.chimeric.gdc_realn.bam 25850563 BAM chimeric harmonized CPTAC3 c577721e-485b-4e20-9d07-919ac8871392 6cacec3c4c69963a6152edd6c6c53d92 {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.RNA-Seq.chimeric.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.chimeric.gdc_realn.bam 85465820 BAM chimeric harmonized CPTAC3 47567744-d950-4cb5-9047-5f4c20a11578 3a7c9b0d25232c0cfe7d4c542a2f4e08 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.RNA-Seq.genomic.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.genomic.gdc_realn.bam 9096132246 BAM genomic harmonized CPTAC3 2561c9e4-45b1-4167-90ff-893804ca1fc4 562ce5ad3b1553f607872b82e4c40cd3 {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.RNA-Seq.genomic.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.genomic.gdc_realn.bam 8596757364 BAM genomic harmonized CPTAC3 a973f0e9-1f4b-480d-8417-4a6d90b8ebd3 462ca65a1cb3796f571508c8b87e3406 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.RNA-Seq.S24_L006_R1.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R1_001.fastq.gz 3996224097 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 8bfdab73-70f3-4d2b-8e02-8080bd13b2e9 895870b0856ed5f1a61597cf0351caec {"aliquot_tag": "ALQ_93846430", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.RNA-Seq.S24_L006_R2.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R2_001.fastq.gz 4320994288 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 88b1f7e9-068a-472e-bfd3-7b557881e6f9 afa333c33141fb786ee55df2d19d2ab7 {"aliquot_tag": "ALQ_93846430", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.RNA-Seq.S27_L007_R1.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R1_001.fastq.gz 3937677388 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d a97f8bdf42ac59123583f8489d8390be {"aliquot_tag": "ALQ_81c59fb3", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.RNA-Seq.S27_L007_R2.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R2_001.fastq.gz 4036597415 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 71ed75b3-d868-4335-b995-535c8d4f07c0 f1ef4a273848085f7986a3ee478a88c4 {"aliquot_tag": "ALQ_81c59fb3", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.RNA-Seq.transcriptome.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.transcriptome.gdc_realn.bam 16642488599 BAM transcriptome harmonized CPTAC3 b6fdc7c6-91e2-4ad7-bc08-03b6e3cead5e 1f1d7db0c196ef043ca1199ba88fdc5a {"aliquot_tag": "ALQ_81c59fb3", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.RNA-Seq.transcriptome.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.transcriptome.gdc_realn.bam 16797632365 BAM transcriptome harmonized CPTAC3 baac4c10-b397-46eb-a867-83372eee2d55 d4940a1a62c747d142b1e8ae0ed9c208 {"aliquot_tag": "ALQ_93846430", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.WGS.T C243909 GBM WGS tumor 7316UP-219-1105241 7316UP-219-1105241.WholeGenome.RP-2158.bam 56915003249 BAM submitted_aligned CPTAC3 54da4592-2a1c-4696-87e4-a0b8f2b0eaed 1f6438cd41793624a477b9365b64e503 {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.WGS.T.hg38 C243909 GBM WGS tumor 7316UP-219-1105241 87b93eca-6649-48fe-8311-56853e65a862_wgs_gdc_realn.bam 169274155921 BAM harmonized CPTAC3 71a00fb2-0e73-4980-88e1-ef84aaa36967 7928cb710bf51a4f89d4e849a94f0bea {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.WXS.N C243909 GBM WXS blood_normal 7316UP-219-1105279 7316UP-219-1105279.WholeExome.RP-1303.bam 28502225983 BAM submitted_aligned CPTAC3 d290276a-8306-4336-921a-16e61bdc4ead edcb9ca772b5efa4d7e7aa98e9bdcecc {"aliquot_tag": "ALQ_5af4f128", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C243909.WXS.N.hg38 C243909 GBM WXS blood_normal 7316UP-219-1105279 20ba330f-7c79-4384-b682-3ba33e885f88_wxs_gdc_realn.bam 38598238526 BAM harmonized CPTAC3 3dd2f03b-0318-4a8e-b8b6-531f33492686 91ad87884e692a1fa85f4d1c93380edc {"aliquot_tag": "ALQ_5af4f128", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C243909.WXS.R C243909 GBM WXS recurrent_tumor 7316UP-485-1105235 7316UP-485-1105235.WholeExome.RP-1303.bam 23297906342 BAM submitted_aligned CPTAC3 abe1406a-385e-4b82-bbe8-aac969c91966 0c2c2a852f2fab6e971960bc9f11754e {"aliquot_tag": "ALQ_c5ba6a9a", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C243909.WXS.R.hg38 C243909 GBM WXS recurrent_tumor 7316UP-485-1105235 5f67efbe-9bae-4857-9fd4-bb841ba534b4_wxs_gdc_realn.bam 31929269201 BAM harmonized CPTAC3 0d7be0a5-6d05-4f07-aad8-e54e2cf4d39e 12f99601414ba1401ff7177df87c3395 {"aliquot_tag": "ALQ_c5ba6a9a", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C243909.WXS.T C243909 GBM WXS tumor 7316UP-219-1105241 7316UP-219-1105241.WholeExome.RP-1303.bam 22953350618 BAM submitted_aligned CPTAC3 96c59667-865e-40c1-8dd9-cd08e128daeb 1f248af4f100a25c1ade22e8163687fc {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C243909.WXS.T.hg38 C243909 GBM WXS tumor 7316UP-219-1105241 87b93eca-6649-48fe-8311-56853e65a862_wxs_gdc_realn.bam 31562155891 BAM harmonized CPTAC3 c7bd5850-d12c-44e5-ab30-20b39a264488 ebe20581b4419d4c68f836313e136391 {"aliquot_tag": "ALQ_7f022ad9", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C247230.DUP_aa190bd.MethArray.Green.T C247230 GBM Methylation_Array tumor 7316UP-8 205854150029_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 597a93d3-033b-4efc-b7c7-7b7628f9d4c7 c936ea2788968a5d6e68c2f32854e1fb {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.DUP_aa190bd.MethArray.Red.T C247230 GBM Methylation_Array tumor 7316UP-8 205854150029_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 223ccfec-3713-4643-9c25-d02ff6f18c30 90fe9700ed81d0ee0361f4287b865bea {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.DUP_aa190bd.WGS.T C247230 GBM WGS tumor 7316UP-8 7316UP-8.WholeGenome.RP-2158.bam 53905269524 BAM submitted_aligned CPTAC3 65b28340-14d4-4169-a018-5edd58793a32 9aa1a40a87adf1df7f02a06060b6ddfe {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.DUP_aa190bd.WGS.T.hg38 C247230 GBM WGS tumor 7316UP-8 44d33820-4b25-4059-b10b-6f7b9038ed39_wgs_gdc_realn.bam 159958839057 BAM harmonized CPTAC3 a32f7c17-1eca-4dcd-92e8-f5b8068d72e7 c191e5bbb6a84be5bec8aaa8f04f1417 {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.DUP_aa190bd.WXS.T C247230 GBM WXS tumor 7316UP-8 7316UP-8.WholeExome.RP-1303.bam 27601184521 BAM submitted_aligned CPTAC3 ab95e72b-3a52-4b01-ab35-ac257492f4e9 201390b516a565baebba7e7d213fe036 {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.DUP_aa190bd.WXS.T.hg38 C247230 GBM WXS tumor 7316UP-8 44d33820-4b25-4059-b10b-6f7b9038ed39_wxs_gdc_realn.bam 37400388874 BAM harmonized CPTAC3 f79420a5-f8b3-4853-85e4-8103a56fc3f9 e68ed6aa02a67e4ddfa67d28b6809670 {"aliquot_tag": "DUP_aa190bd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C247230.DUP_e9d04cd8.MethArray.Green.R C247230 GBM Methylation_Array recurrent_tumor 7316UP-243 205705520056_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d7e68fbf-2764-46c9-80b6-ca329aa55bb8 7da17e3377f4bbf318eee4d289a72aea {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.DUP_e9d04cd8.MethArray.Red.R C247230 GBM Methylation_Array recurrent_tumor 7316UP-243 205705520056_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 42ef7b01-295b-480b-8609-5318ea68939a 4218880e132a549e17caabd5b827537b {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.DUP_e9d04cd8.WGS.R C247230 GBM WGS recurrent_tumor 7316UP-243 7316UP-243.WholeGenome.RP-2158.bam 47459738308 BAM submitted_aligned CPTAC3 8058370c-7e94-45d2-9131-6ff34cce28ed 897785648732aeff71efb9fc43d61849 {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.DUP_e9d04cd8.WGS.R.hg38 C247230 GBM WGS recurrent_tumor 7316UP-243 a16f7d3f-200b-49db-9909-c361c50a90c8_wgs_gdc_realn.bam 142694777571 BAM harmonized CPTAC3 6e46a682-eb97-4ac2-8d28-4726cae9a0b6 69fb984b60940e3dc29927d1ea3c5ad6 {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.DUP_e9d04cd8.WXS.R C247230 GBM WXS recurrent_tumor 7316UP-243 7316UP-243.WholeExome.RP-1303.bam 22789049179 BAM submitted_aligned CPTAC3 9ce277ba-4d70-49f1-9a79-517b1a0abde6 221dd5ca5dce51353687da7f99ec893d {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.DUP_e9d04cd8.WXS.R.hg38 C247230 GBM WXS recurrent_tumor 7316UP-243 a16f7d3f-200b-49db-9909-c361c50a90c8_wxs_gdc_realn.bam 31063908626 BAM harmonized CPTAC3 1e18a44f-e868-400d-bc06-212bb7f6d66a 6d0c6df460bbd54230cf217c8a87feda {"aliquot_tag": "DUP_e9d04cd8", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C247230.miRNA-Seq.R.hg38 C247230 GBM miRNA-Seq recurrent_tumor 7316UP-243-1104766 41832d73-f951-447d-964c-51645d636268_mirnaseq_gdc_realn.bam 503338290 BAM harmonized CPTAC3 b875033d-eb38-4314-a95a-0e22cb57b14a 9653a8ae06d0cee9f20f27cc9315fdf4 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.miRNA-Seq.S29_L002_R1.T C247230 GBM miRNA-Seq tumor 7316UP-8-1104780 210817_UNC31-K00269_0302_AHLCTHBBXY_GACGAC_S29_L002_R1_001.unaln.bam 213631329 BAM S29_L002_R1 submitted_unaligned CPTAC3 9d7396dc-8425-4efc-b911-f5ec4c08beae 4bef82499534e2579dbf913c3e5cce2c {"aliquot_tag": "ALQ_32a21592", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.miRNA-Seq.S2_L001_R1.R C247230 GBM miRNA-Seq recurrent_tumor 7316UP-243-1104766 210817_UNC31-K00269_0302_AHLCTHBBXY_ATTCCT_S2_L001_R1_001.unaln.bam 448212917 BAM S2_L001_R1 submitted_unaligned CPTAC3 aceea17e-293a-4fc7-8147-5579c2bde608 3bfd1d0aa3e1677901645211a608928f {"aliquot_tag": "ALQ_1e2039ac", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.miRNA-Seq.T.hg38 C247230 GBM miRNA-Seq tumor 7316UP-8-1104780 12e7bd82-0f76-49f3-ad81-19fde19d043f_mirnaseq_gdc_realn.bam 243425608 BAM harmonized CPTAC3 fcbacfb3-fd33-4485-a01f-5b58d2facb90 2d47dd93db6475358e362352c79b156f {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.RNA-Seq.chimeric.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.chimeric.gdc_realn.bam 40127402 BAM chimeric harmonized CPTAC3 a15555ad-244b-4796-bdea-b9a8da90d4ff 5034e933823c50808cfc44d1df8f0521 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.RNA-Seq.chimeric.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.chimeric.gdc_realn.bam 111055787 BAM chimeric harmonized CPTAC3 f5f3341f-37fe-473d-9481-0d59ae5ecff1 6ebd155a4239a6436978c16b68491ab8 {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.RNA-Seq.genomic.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.genomic.gdc_realn.bam 8685326882 BAM genomic harmonized CPTAC3 2e81b543-8da5-402d-bcc7-15ad86bcbf80 4abe0a2acb85bd15c8c651f033ae30b0 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.RNA-Seq.genomic.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.genomic.gdc_realn.bam 8834657872 BAM genomic harmonized CPTAC3 5479baec-5c9c-4c5d-b85c-23e24ddef741 fcdd729b6fbd50290e53309438f83ee6 {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.RNA-Seq.S22_L006_R1.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R1_001.fastq.gz 3837839898 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 4c52701e-f9d9-4fbf-9530-2d8e420b5078 6225a9ed63e76e993d364df634351f64 {"aliquot_tag": "ALQ_32a21592", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.RNA-Seq.S22_L006_R2.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R2_001.fastq.gz 4058273725 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 bd9ebef7-47a0-4365-a921-12a36feb035b a5e0407cc240f2db02daaf9a2406be4c {"aliquot_tag": "ALQ_32a21592", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.RNA-Seq.S7_L002_R1.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R1_001.fastq.gz 3300405304 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 982111f4-0501-4138-a072-3243d58dd670 3afa847dc8c859a8e4c76d6df90be1a3 {"aliquot_tag": "ALQ_1e2039ac", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.RNA-Seq.S7_L002_R2.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R2_001.fastq.gz 3601477757 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 25e17967-5374-45f3-a76c-1d236667a8b2 19ae8c3aa7e21f1b44a8e9dc35127b0f {"aliquot_tag": "ALQ_1e2039ac", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.RNA-Seq.transcriptome.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.transcriptome.gdc_realn.bam 12827689325 BAM transcriptome harmonized CPTAC3 fce0ad04-a793-4b5b-8ea8-a89ff03a7b56 7a98ec94084b660cbfb39c5b55859322 {"aliquot_tag": "ALQ_1e2039ac", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.RNA-Seq.transcriptome.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.transcriptome.gdc_realn.bam 14686014418 BAM transcriptome harmonized CPTAC3 ff2b3c82-7af6-469c-8d20-c866442b349c b63a76606e44298d41defe537def782f {"aliquot_tag": "ALQ_32a21592", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.WGS.N C247230 GBM WGS blood_normal 7316UP-243-1105280 7316UP-243-1105280.WholeGenome.RP-2158.bam 57314256084 BAM submitted_aligned CPTAC3 58a2b1ac-1bcf-4c3f-a404-678d5503f37a 621d9c9991da3c7be4cef6abbb190723 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C247230.WGS.N.hg38 C247230 GBM WGS blood_normal 7316UP-243-1105280 bafee300-6a7f-4e2a-b45d-0ae8e53655db_wgs_gdc_realn.bam 166548205017 BAM harmonized CPTAC3 af1de814-a89b-4044-9f65-925fe40aaf42 cf49c9f6f8635eaf50a6f9439182a354 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C247230.WXS.N C247230 GBM WXS blood_normal 7316UP-243-1105280 7316UP-243-1105280.WholeExome.RP-1303.bam 25993398731 BAM submitted_aligned CPTAC3 9b772baf-d183-401e-a925-bf90c0717c52 677cad82b6859274a120195b86169063 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C247230.WXS.N.hg38 C247230 GBM WXS blood_normal 7316UP-243-1105280 bafee300-6a7f-4e2a-b45d-0ae8e53655db_wxs_gdc_realn.bam 35512038256 BAM harmonized CPTAC3 086861a1-1e33-4c25-b509-38a0c0f4b1e6 c0cb3531811f0cdca9c143a6a2cdda29 {"aliquot_tag": "ALQ_d7b71499", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C247230.WXS.R C247230 GBM WXS recurrent_tumor 7316UP-243-1105229 7316UP-243-1105229.WholeExome.RP-1303.bam 22180737177 BAM submitted_aligned CPTAC3 b8807cca-8f0f-4399-861a-7a14e01a97f2 9a67b576423d633aab96f2e0cf9f723e {"aliquot_tag": "ALQ_548444b7", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C247230.WXS.R.hg38 C247230 GBM WXS recurrent_tumor 7316UP-243-1105229 98f71749-a68e-4bd9-930f-224f65a1bf8e_wxs_gdc_realn.bam 30087935083 BAM harmonized CPTAC3 92fc25a5-3390-42f3-93e8-117df6356e29 4225fa937d0669355ef887fed6fe109b {"aliquot_tag": "ALQ_548444b7", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C247230.WXS.T C247230 GBM WXS tumor 7316UP-8-1105243 7316UP-8-1105243.WholeExome.RP-1303.bam 27341900884 BAM submitted_aligned CPTAC3 dcba1f63-8aa5-4a23-8eae-e1c3b13a7335 8df0bbe77f7474d674effcd334ba7018 {"aliquot_tag": "ALQ_b969aeaa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C247230.WXS.T.hg38 C247230 GBM WXS tumor 7316UP-8-1105243 eafce93e-0fd9-44bb-942d-7820b6f68744_wxs_gdc_realn.bam 37210403279 BAM harmonized CPTAC3 94b2e77b-dacb-475b-bbef-febab3c064c2 c59b6e07e6379b603c8034be6df2aaab {"aliquot_tag": "ALQ_b969aeaa", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C259161.DUP_5c7e3295.MethArray.Green.T C259161 GBM Methylation_Array tumor 7316UP-293 205828590001_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 7620dc30-1581-4eb7-9cca-395334fb9aef f3ee23f2699b880db0cd9d5a408cef92 {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.DUP_5c7e3295.MethArray.Red.T C259161 GBM Methylation_Array tumor 7316UP-293 205828590001_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 d0e798e0-177c-4322-91bc-89928658380f f39c188f4affb12fec70c49ccfb99bec {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.DUP_5c7e3295.WGS.T C259161 GBM WGS tumor 7316UP-293 7316UP-293.WholeGenome.RP-2158.bam 51492350207 BAM submitted_aligned CPTAC3 b9dd5682-e558-42df-b76f-56dffe1d3e63 add9f5ad40c48a6ba4fe48fa34ea842a {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.DUP_5c7e3295.WGS.T.hg38 C259161 GBM WGS tumor 7316UP-293 71aff02e-d6dd-4292-8627-d33c7d95fea5_wgs_gdc_realn.bam 147762673467 BAM harmonized CPTAC3 88db0eef-aadc-4e7b-b6e9-20df18940bf3 806cf54a700a596a2fecbd4300aabc1b {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.DUP_5c7e3295.WXS.T C259161 GBM WXS tumor 7316UP-293 7316UP-293.WholeExome.RP-1303.bam 21468924973 BAM submitted_aligned CPTAC3 c06021b5-0843-46e8-a2f7-9bbdd7275f57 9afe38d231ab4feb975539d480fe835a {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.DUP_5c7e3295.WXS.T.hg38 C259161 GBM WXS tumor 7316UP-293 71aff02e-d6dd-4292-8627-d33c7d95fea5_wxs_gdc_realn.bam 29087943502 BAM harmonized CPTAC3 942805cd-2142-4c93-b3d2-a8980b14e829 710cabcd82da98962a19b73a0c963dd3 {"aliquot_tag": "DUP_5c7e3295", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C259161.miRNA-Seq.R.hg38 C259161 GBM miRNA-Seq recurrent_tumor 7316UP-349-1104793 28655cf0-3804-4657-abec-5cd024c18dc8_mirnaseq_gdc_realn.bam 539482740 BAM harmonized CPTAC3 99ce1cb7-e4c5-4231-b9a1-75933d5f6bb6 43fa79eff936e35a08298c3cab36f268 {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.miRNA-Seq.S31_L002_R1.R C259161 GBM miRNA-Seq recurrent_tumor 7316UP-349-1104793 210817_UNC31-K00269_0302_AHLCTHBBXY_GCCAAT_S31_L002_R1_001.unaln.bam 464236046 BAM S31_L002_R1 submitted_unaligned CPTAC3 e4bdd6d6-4248-414d-8170-525e360aa9c1 041723ba253799cd799629f1abd061e0 {"aliquot_tag": "ALQ_bd7284b2", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.miRNA-Seq.S40_L002_R1.T C259161 GBM miRNA-Seq tumor 7316UP-293-1104787 210817_UNC31-K00269_0302_AHLCTHBBXY_TCGGCA_S40_L002_R1_001.unaln.bam 330508572 BAM S40_L002_R1 submitted_unaligned CPTAC3 5f0cd3b6-67e2-460b-b629-26c99919328b 285da821920368a666e7806cc43c1235 {"aliquot_tag": "ALQ_25aaf04", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.miRNA-Seq.T.hg38 C259161 GBM miRNA-Seq tumor 7316UP-293-1104787 7091f748-633c-46ec-8ac6-19145dd1d5c0_mirnaseq_gdc_realn.bam 374385566 BAM harmonized CPTAC3 08dda8da-4c64-4913-8687-59e6961d514a 25c47af7f29f3d9fa0682a0ecdc3cc8d {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.RNA-Seq.chimeric.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.chimeric.gdc_realn.bam 53445744 BAM chimeric harmonized CPTAC3 13904bc4-8e3d-42a1-ae74-c1effec4b272 9927918acc4ba48190c619b86e1667eb {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.RNA-Seq.chimeric.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.chimeric.gdc_realn.bam 102727780 BAM chimeric harmonized CPTAC3 f7a4c4a5-df6a-4d3c-b004-bc1a579a37fc 4a0c322388b96d98563903bfeead603c {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.RNA-Seq.genomic.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.genomic.gdc_realn.bam 9556689537 BAM genomic harmonized CPTAC3 e0abe08b-c62c-4134-aa63-cfb21cfde381 54b04b340af667b159fde66107177188 {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.RNA-Seq.genomic.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.genomic.gdc_realn.bam 9477389368 BAM genomic harmonized CPTAC3 0185bf58-ee9b-44d5-89d1-a40b4cebf3a4 bf8ec446be511d11226c3b8b8b13cd79 {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.RNA-Seq.S16_L004_R1.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R1_001.fastq.gz 3933839190 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 04492d6a-768d-408d-8491-a3421e3d7fb1 2b1841386be1aaf0864d2ba5d322e649 {"aliquot_tag": "ALQ_bd7284b2", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.RNA-Seq.S16_L004_R2.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R2_001.fastq.gz 4236168874 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 66fc2918-baf1-4cce-951f-423eec4d3e30 12a10f749c89a2806297926dc66a83b3 {"aliquot_tag": "ALQ_bd7284b2", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.RNA-Seq.S21_L006_R1.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R1_001.fastq.gz 4076185110 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 99e448a9-f393-41a2-9c6a-46ed6a453a25 b0b53e1ae2abad3ee3d440aa67dff5a0 {"aliquot_tag": "ALQ_25aaf04", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.RNA-Seq.S21_L006_R2.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R2_001.fastq.gz 4363507516 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 ef415675-ebd8-43c7-94ea-63da5ebf9db3 1dd021d1a775ec867da4cbf019b515c3 {"aliquot_tag": "ALQ_25aaf04", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.RNA-Seq.transcriptome.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.transcriptome.gdc_realn.bam 15103656042 BAM transcriptome harmonized CPTAC3 e852e168-d979-445a-be59-d32afa63ebd4 c6f2848df594dd6262f54142fa0d894d {"aliquot_tag": "ALQ_bd7284b2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.RNA-Seq.transcriptome.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.transcriptome.gdc_realn.bam 16376632344 BAM transcriptome harmonized CPTAC3 8dbf338d-1e5d-4937-bc86-33a7ede035b0 dfc9fe5cdbc2141fdbcb33640a0563c9 {"aliquot_tag": "ALQ_25aaf04", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.WGS.N C259161 GBM WGS blood_normal 7316UP-293-1105283 7316UP-293-1105283.WholeGenome.RP-2158.bam 57896176406 BAM submitted_aligned CPTAC3 3da278c9-b808-4a2e-af20-5ba92f403ab0 19be2d8cdb31387309514ec0d57cf365 {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C259161.WGS.N.hg38 C259161 GBM WGS blood_normal 7316UP-293-1105283 603ac742-ade4-40ab-8520-057a0e4f8ecb_wgs_gdc_realn.bam 170408183425 BAM harmonized CPTAC3 957eecd3-4344-4afa-9bf2-b2af7d954a5e 12867c9c06bffa66e40949a6e653c86c {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C259161.WGS.R C259161 GBM WGS recurrent_tumor 7316UP-349-1105257 7316UP-349-1105257.WholeGenome.RP-2158.bam 50639596227 BAM submitted_aligned CPTAC3 9acde03d-85af-45b6-850f-fa97cc0c7340 0ef07a74f7de9c04f55f9c3bfaa25648 {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.WGS.R.hg38 C259161 GBM WGS recurrent_tumor 7316UP-349-1105257 9d818652-ee59-4e8b-84f0-d25532dd38cf_wgs_gdc_realn.bam 147986610083 BAM harmonized CPTAC3 0784f4d4-d647-403c-bf97-411858afc33f 16d7b51b39e2dbe2f17729db3f00f34d {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C259161.WGS.T C259161 GBM WGS tumor 7316UP-293-1105250 7316UP-293-1105250.WholeGenome.RP-2158.bam 57788463110 BAM submitted_aligned CPTAC3 74371bec-c399-456a-b912-e49ef8cf7290 893770295090e3ebf3c290994a74922f {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.WGS.T.hg38 C259161 GBM WGS tumor 7316UP-293-1105250 c72c1846-16af-4899-a429-9f5b7c954a58_wgs_gdc_realn.bam 168293940872 BAM harmonized CPTAC3 389e91a8-3b5c-4d4a-9e58-7f45e2698503 36c7d16cf5ee62c0c4f45ff16c4e50b2 {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.WXS.N C259161 GBM WXS blood_normal 7316UP-293-1105283 7316UP-293-1105283.WholeExome.RP-1303.bam 25717997268 BAM submitted_aligned CPTAC3 5fe5e6d3-0f58-49cf-b0f2-861cc836f83b 4eaed368a3d54ad6e801c0f1f467c88b {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C259161.WXS.N.hg38 C259161 GBM WXS blood_normal 7316UP-293-1105283 603ac742-ade4-40ab-8520-057a0e4f8ecb_wxs_gdc_realn.bam 34903240457 BAM harmonized CPTAC3 a5ab0154-a15f-43d2-971f-55ba37282546 eecea6a4090405c7cf77a06792fd8c75 {"aliquot_tag": "ALQ_bb40ce93", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C259161.WXS.R C259161 GBM WXS recurrent_tumor 7316UP-349-1105257 7316UP-349-1105257.WholeExome.RP-1303.bam 29700714795 BAM submitted_aligned CPTAC3 f12b0fa6-8ad9-4f0b-a9e6-e27e6e26bec5 ea4f85779c10bb585a5e94dec29a171a {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C259161.WXS.R.hg38 C259161 GBM WXS recurrent_tumor 7316UP-349-1105257 9d818652-ee59-4e8b-84f0-d25532dd38cf_wxs_gdc_realn.bam 40707347912 BAM harmonized CPTAC3 eb83d8e6-500f-4e99-82ac-fc4e079b3fb8 1b878d210610df8150929f6a221fdcae {"aliquot_tag": "ALQ_a8ddaa29", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C259161.WXS.T C259161 GBM WXS tumor 7316UP-293-1105250 7316UP-293-1105250.WholeExome.RP-1303.bam 29802893632 BAM submitted_aligned CPTAC3 f16c354e-4c82-4248-a6d1-2d52ed2aaf13 626cd0ab2494875a3491416c19c1eb74 {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C259161.WXS.T.hg38 C259161 GBM WXS tumor 7316UP-293-1105250 c72c1846-16af-4899-a429-9f5b7c954a58_wxs_gdc_realn.bam 40738250391 BAM harmonized CPTAC3 2fe9a9b8-b5c4-4e72-8fb7-71cac06dd773 fa2861e171552221e417540fa05b640b {"aliquot_tag": "ALQ_97e7e164", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C266664.DUP_5dbc58a2.MethArray.Green.T C266664 GBM Methylation_Array tumor 7316UP-393 205707890106_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a32c7219-318d-484b-8563-d9d3423acafc e353cda16efd4bf59828fecada5ed772 {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.DUP_5dbc58a2.MethArray.Red.T C266664 GBM Methylation_Array tumor 7316UP-393 205707890106_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 54fe2299-ad7e-4f6e-8309-3a0cd4713a35 0757f5170e984f025a74818a4003dfe4 {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.DUP_5dbc58a2.WGS.T C266664 GBM WGS tumor 7316UP-393 7316UP-393.WholeGenome.RP-2158.bam 61362965684 BAM submitted_aligned CPTAC3 455c35ce-ea41-4b99-bb0a-46816906b859 2209a014757265b8f731e786c2459948 {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.DUP_5dbc58a2.WGS.T.hg38 C266664 GBM WGS tumor 7316UP-393 670c02b3-383c-4ca4-9a0d-2fc479296d0c_wgs_gdc_realn.bam 177904424104 BAM harmonized CPTAC3 e04b8d09-5776-4725-b3f5-db58cd62f8f6 abcafa3a38b34a21bf0865858d3c647e {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.DUP_5dbc58a2.WXS.T C266664 GBM WXS tumor 7316UP-393 7316UP-393.WholeExome.RP-1303.bam 32889072571 BAM submitted_aligned CPTAC3 1b809ed9-7f11-4a12-9402-43c8f12c93c8 bd066a01085fa2594c1f047c7332b76f {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.DUP_5dbc58a2.WXS.T.hg38 C266664 GBM WXS tumor 7316UP-393 670c02b3-383c-4ca4-9a0d-2fc479296d0c_wxs_gdc_realn.bam 45112910713 BAM harmonized CPTAC3 ad1b5b7b-5c70-44e1-aa5c-f1e397fbb55a 7193b6a00c7e7379ccdfd63d14b0958b {"aliquot_tag": "DUP_5dbc58a2", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C266664.DUP_f5846b1c.MethArray.Green.R C266664 GBM Methylation_Array recurrent_tumor 7316UP-553 205705520056_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a5c8ec4f-e9b9-4dab-9777-b85dea6cd258 d513d197146776d07e147cd631af2cf4 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.DUP_f5846b1c.MethArray.Red.R C266664 GBM Methylation_Array recurrent_tumor 7316UP-553 205705520056_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 7fa9d505-f189-484a-90f6-3444297d0f05 867eb7e3c5a8d1321e1e8705fb50fd7c {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.DUP_f5846b1c.WGS.R C266664 GBM WGS recurrent_tumor 7316UP-553 7316UP-553.WholeGenome.RP-2158.bam 54234643027 BAM submitted_aligned CPTAC3 2ac25df6-1097-47be-ba43-a53283235015 1affa8e36e43be345ed26e06ad276e51 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.DUP_f5846b1c.WGS.R.hg38 C266664 GBM WGS recurrent_tumor 7316UP-553 76189e22-96ba-4eb1-8901-b9655aafb241_wgs_gdc_realn.bam 166973550960 BAM harmonized CPTAC3 3576132e-1814-4928-b431-292d202259ae d71b1f0b8a08561e2ef5826e16582575 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.DUP_f5846b1c.WXS.R C266664 GBM WXS recurrent_tumor 7316UP-553 7316UP-553.WholeExome.RP-1303.bam 24922371326 BAM submitted_aligned CPTAC3 11bcff0f-cb87-409b-b58e-ff8859203502 78f9623b2248c4ea51ec63398690b1ca {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.DUP_f5846b1c.WXS.R.hg38 C266664 GBM WXS recurrent_tumor 7316UP-553 76189e22-96ba-4eb1-8901-b9655aafb241_wxs_gdc_realn.bam 85867672951 BAM harmonized CPTAC3 c61e7ef0-1f5b-4b8a-8d31-0f7fd0b03141 afe556b9a173b78e4ffe03ebe49c9a84 {"aliquot_tag": "DUP_f5846b1c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C266664.miRNA-Seq.R.hg38 C266664 GBM miRNA-Seq recurrent_tumor 7316UP-553-1104771 3d0007d9-d52a-4daa-ba33-f6d5aea63443_mirnaseq_gdc_realn.bam 156242375 BAM harmonized CPTAC3 d94ead59-6712-4b0e-9e4d-f8f9318c04b1 e210e7a7af0313702a2851c1f78b86fd {"aliquot_tag": "ALQ_5fa6e3f3", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.miRNA-Seq.S17_L003_R1.T C266664 GBM miRNA-Seq tumor 7316UP-393-1104804 210817_UNC31-K00269_0302_AHLCTHBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 168626022 BAM S17_L003_R1 submitted_unaligned CPTAC3 a21dc826-feca-410d-9393-6ce5bb8ff9d6 cb4d3471b1842e3071474312b4f0a267 {"aliquot_tag": "ALQ_9958ec4b", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.miRNA-Seq.S7_L001_R1.R C266664 GBM miRNA-Seq recurrent_tumor 7316UP-553-1104771 210817_UNC31-K00269_0302_AHLCTHBBXY_CACTCA_S7_L001_R1_001.unaln.bam 134303715 BAM S7_L001_R1 submitted_unaligned CPTAC3 846ccca6-b823-4daa-81b1-3aaaba6e38d8 ece599e1b740f80b0e55f163122143a5 {"aliquot_tag": "ALQ_5fa6e3f3", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.miRNA-Seq.T.hg38 C266664 GBM miRNA-Seq tumor 7316UP-393-1104804 5151925a-52f2-4dbf-83ce-fff860e41e3d_mirnaseq_gdc_realn.bam 202471637 BAM harmonized CPTAC3 597ee29b-d771-4ad0-bcf9-19227dd4f906 d9d49260d93302fad8121e68a25c64d9 {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.RNA-Seq.chimeric.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.chimeric.gdc_realn.bam 79986402 BAM chimeric harmonized CPTAC3 083418d6-1b20-437f-b366-197418ec4056 bb25f03ff841586b027f1fd86c748260 {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.RNA-Seq.genomic.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.genomic.gdc_realn.bam 8262571082 BAM genomic harmonized CPTAC3 d58ecb4b-0513-41e1-9875-924f338eb487 4ecd120adb68fa070ab77e353d4a8ab3 {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.RNA-Seq.S2_L001_R1.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R1_001.fastq.gz 3742428699 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 d47ac642-9204-45da-a0b5-ea6a80d65139 597db318e3525ed903694fc8a8d25200 {"aliquot_tag": "ALQ_9958ec4b", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.RNA-Seq.S2_L001_R2.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R2_001.fastq.gz 4195942259 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 1671b3e1-6b22-4326-bf41-49312e3c6829 a77eced373b4b2ff82f3ce70b5856e2b {"aliquot_tag": "ALQ_9958ec4b", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.RNA-Seq.transcriptome.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.transcriptome.gdc_realn.bam 17009612181 BAM transcriptome harmonized CPTAC3 d765be70-b7b0-4f23-872e-8f50c16f3119 e961fae7f6b2f5f83e282c571f5023bd {"aliquot_tag": "ALQ_9958ec4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.WGS.N C266664 GBM WGS blood_normal 7316UP-393-1105287 7316UP-393-1105287.WholeGenome.RP-2158.bam 59038265208 BAM submitted_aligned CPTAC3 4933d676-52c9-43fe-8946-9946412334c6 095f26fa61ffec9eef27ad927a4a2acb {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C266664.WGS.N.hg38 C266664 GBM WGS blood_normal 7316UP-393-1105287 183166cb-a3d2-40ed-879f-4c904682b10c_wgs_gdc_realn.bam 172857422135 BAM harmonized CPTAC3 f92426ea-9a03-45c1-bece-4af8fc16d4b0 be071ef8353e08f2737e78363c8498b7 {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C266664.WGS.R C266664 GBM WGS recurrent_tumor 7316UP-553-1105234 7316UP-553-1105234.WholeGenome.RP-2158.bam 66530087101 BAM submitted_aligned CPTAC3 9c7c70af-1d81-42d2-859e-3b613a2c0d93 30b1c57fec53b1c25996f3a096ab49df {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.WGS.R.hg38 C266664 GBM WGS recurrent_tumor 7316UP-553-1105234 01ea1502-dd69-45cb-907b-cd10df01c80f_wgs_gdc_realn.bam 200097554810 BAM harmonized CPTAC3 a3ccc1c4-ddd9-49eb-9d70-10f4458808c0 05ef187e9b05fa3a334870ef54e78792 {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.WXS.N C266664 GBM WXS blood_normal 7316UP-393-1105287 7316UP-393-1105287.WholeExome.RP-1303.bam 20596651439 BAM submitted_aligned CPTAC3 d2dd83e7-1770-4ffa-bf6b-41ba9814306c 6c211d9fabce2892cf5da12bfb4abd5d {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C266664.WXS.N.hg38 C266664 GBM WXS blood_normal 7316UP-393-1105287 183166cb-a3d2-40ed-879f-4c904682b10c_wxs_gdc_realn.bam 27685143779 BAM harmonized CPTAC3 71300e5d-68de-495d-ba73-68637b1ff049 0a78bfc818e8e71956350c4fcc4e2d53 {"aliquot_tag": "ALQ_7da3d54a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C266664.WXS.R C266664 GBM WXS recurrent_tumor 7316UP-553-1105234 7316UP-553-1105234.WholeExome.RP-1303.bam 24219633494 BAM submitted_aligned CPTAC3 16f314d3-9c0d-4227-8af9-67e9e5027f8e 2c303e1557bd8d84beab270927f52e31 {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C266664.WXS.R.hg38 C266664 GBM WXS recurrent_tumor 7316UP-553-1105234 01ea1502-dd69-45cb-907b-cd10df01c80f_wxs_gdc_realn.bam 32896304820 BAM harmonized CPTAC3 93d9c6eb-04ed-488c-92db-d2e329cc4ed6 fdd12eb16d639e0c44a6b6753cc22a6a {"aliquot_tag": "ALQ_f5d777f6", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C266664.WXS.T C266664 GBM WXS tumor 7316UP-393-1105269 7316UP-393-1105269.WholeExome.RP-1303.bam 31877144001 BAM submitted_aligned CPTAC3 0b7af748-7592-49d9-957e-44e63c0f6e26 913e998c980dfa73b834dd0651a06704 {"aliquot_tag": "ALQ_498d5c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C266664.WXS.T.hg38 C266664 GBM WXS tumor 7316UP-393-1105269 3af09701-86aa-4741-aa59-9aed8b02f2bf_wxs_gdc_realn.bam 43507973790 BAM harmonized CPTAC3 7fa81b59-b344-463c-91a7-3bf91763635f df7122d0f7d1b182e5150b184946e4f8 {"aliquot_tag": "ALQ_498d5c3", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C283515.DUP_16970afa.MethArray.Green.T C283515 GBM Methylation_Array tumor 7316UP-504 205705520096_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d1433262-16e0-4b67-af26-d9bea0b7ab43 9b42994a87b1b31c26290ff2c5cc1b26 {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.DUP_16970afa.MethArray.Red.T C283515 GBM Methylation_Array tumor 7316UP-504 205705520096_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 3463d5d7-e0f6-4adb-b6b5-77299c6dd438 973980c1830fdb1d968701bbf9122cd9 {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.DUP_16970afa.WGS.T C283515 GBM WGS tumor 7316UP-504 7316UP-504.WholeGenome.RP-2158.bam 55266574890 BAM submitted_aligned CPTAC3 a2c6a65f-2824-4857-bee9-62b24c49d7de f9169f14213c88b33c991571fd353074 {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.DUP_16970afa.WGS.T.hg38 C283515 GBM WGS tumor 7316UP-504 2a1d8b76-daf0-4068-8ad2-61c163e545a3_wgs_gdc_realn.bam 166572784981 BAM harmonized CPTAC3 f01f616f-baae-41c6-bc30-d7baa888fca2 ba236a69e0e00fc1e2eeb70a5765cebd {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.DUP_16970afa.WXS.T C283515 GBM WXS tumor 7316UP-504 7316UP-504.WholeExome.RP-1303.bam 29107187041 BAM submitted_aligned CPTAC3 5c844fd6-1972-4f54-947f-9e802fba0a0c 6e2d29f1cdfc6bd359f87c98c9f0e68a {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.DUP_16970afa.WXS.T.hg38 C283515 GBM WXS tumor 7316UP-504 2a1d8b76-daf0-4068-8ad2-61c163e545a3_wxs_gdc_realn.bam 39488745732 BAM harmonized CPTAC3 fb59bee7-446d-4669-bd78-6234196d0153 48d0752142b31493c2e37ec0c14e59eb {"aliquot_tag": "DUP_16970afa", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C283515.DUP_d7547996.MethArray.Green.R C283515 GBM Methylation_Array recurrent_tumor 7316UP-984 205707890172_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9e3e7693-3b73-467b-8b4d-d3b39fd64d19 6201b7856c280184cdeaa69f198c00f2 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.DUP_d7547996.MethArray.Red.R C283515 GBM Methylation_Array recurrent_tumor 7316UP-984 205707890172_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 df1526d9-b8f9-4cbd-b2f6-3902c29d113e f98589d46cfc67ef0bb21db8c552a788 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.DUP_d7547996.WGS.R C283515 GBM WGS recurrent_tumor 7316UP-984 7316UP-984.WholeGenome.RP-2158.bam 57538611032 BAM submitted_aligned CPTAC3 03347b56-bd16-41d2-aa03-41d9bc0948e8 c00da0da73319343d312d409ceb16601 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.DUP_d7547996.WGS.R.hg38 C283515 GBM WGS recurrent_tumor 7316UP-984 e6afe946-db00-4032-bb12-f2e7776820a8_wgs_gdc_realn.bam 505434638875 BAM harmonized CPTAC3 6c868a5b-4408-40cf-86d7-aa6815f01158 47cb295a9306e8f54bcd2bc93ec1bcd7 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.DUP_d7547996.WXS.R C283515 GBM WXS recurrent_tumor 7316UP-984 7316UP-984.WholeExome.RP-1303.bam 41783529224 BAM submitted_aligned CPTAC3 2fa033b4-2cb4-4201-9f32-5b1f9bf295c8 273b984187750f3633d12b43c04e2c6a {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.DUP_d7547996.WXS.R.hg38 C283515 GBM WXS recurrent_tumor 7316UP-984 e6afe946-db00-4032-bb12-f2e7776820a8_wxs_gdc_realn.bam 57797248604 BAM harmonized CPTAC3 ebb8e701-0bcd-4507-b17e-bcffcd66a4f7 5fa425aaa027280c11b419006d5c72b7 {"aliquot_tag": "DUP_d7547996", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C283515.miRNA-Seq.R.hg38 C283515 GBM miRNA-Seq recurrent_tumor 7316UP-984-1104775 d52b65ea-506a-4ebf-a64c-0055cdb439d6_mirnaseq_gdc_realn.bam 159660973 BAM harmonized CPTAC3 77450024-c5c6-4398-bc39-7168fd9f72ae 70db5849e2a0ebc4bb35df3354b98cdb {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.miRNA-Seq.S11_L001_R1.R C283515 GBM miRNA-Seq recurrent_tumor 7316UP-984-1104775 210817_UNC31-K00269_0302_AHLCTHBBXY_CCAACA_S11_L001_R1_001.unaln.bam 139003163 BAM S11_L001_R1 submitted_unaligned CPTAC3 05ba2a84-bc05-4050-ad97-13ee22e23931 2c578aa7018fcd6f18e68c0faea323e6 {"aliquot_tag": "ALQ_c34e5354", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.miRNA-Seq.S2_L003_R1.T C283515 GBM miRNA-Seq tumor 7316UP-504-1104814 210817_UNC31-K00269_0302_AHLCTHBBXY_ATTCCT_S2_L003_R1_001.unaln.bam 468397806 BAM S2_L003_R1 submitted_unaligned CPTAC3 daffe531-d4de-49d7-a035-b56a098b7c89 d76d4f76d4b05a3e5b106b6923cdec21 {"aliquot_tag": "ALQ_f082514a", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.miRNA-Seq.T.hg38 C283515 GBM miRNA-Seq tumor 7316UP-504-1104814 cd9ddde9-a159-46ac-890a-e289dc221559_mirnaseq_gdc_realn.bam 577165282 BAM harmonized CPTAC3 c2a4f903-52c4-4110-a4a1-22ae072b0f3a 9784dd911262a70b2e9d9ff138b25762 {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.RNA-Seq.chimeric.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.chimeric.gdc_realn.bam 52068135 BAM chimeric harmonized CPTAC3 c49e3472-835c-4b19-9228-be22252f68b2 3ae1076b4bc66f5e6a854d32e9d6633a {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.RNA-Seq.chimeric.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.chimeric.gdc_realn.bam 42435047 BAM chimeric harmonized CPTAC3 8b7d8ba7-f2e1-4a63-9e6b-2837cd66ca51 455afe0399f25fcc9306c3974a6a57df {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.RNA-Seq.genomic.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.genomic.gdc_realn.bam 8996805447 BAM genomic harmonized CPTAC3 1f87bca4-8222-4279-85de-17b7fc809348 fe1699437bb946b9e5d35e68532044c3 {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.RNA-Seq.genomic.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.genomic.gdc_realn.bam 9269250037 BAM genomic harmonized CPTAC3 7c5a7f1f-7309-4643-b673-ae16e1e917f0 9effa10e394f583b4c7bcb7332ac06de {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.RNA-Seq.S10_L003_R1.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R1_001.fastq.gz 4296068185 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 543f557f-1beb-4456-a0fd-cec8d084ff20 cabfd9546a058e1d4982e38e22d6a325 {"aliquot_tag": "ALQ_c34e5354", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.RNA-Seq.S10_L003_R2.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R2_001.fastq.gz 4586968183 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 43aa9185-30e8-46cc-81ff-279a1e9f2350 7a52b03690b60a686b194eba8e775014 {"aliquot_tag": "ALQ_c34e5354", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.RNA-Seq.S13_L004_R1.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R1_001.fastq.gz 4256039693 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 788421a7-7d30-4bc6-b77a-688289cf5778 7e85eef9e8d32b12bc0aa9269e902593 {"aliquot_tag": "ALQ_f082514a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.RNA-Seq.S13_L004_R2.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R2_001.fastq.gz 4571169592 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 5bccff6e-1343-4834-b5ce-71abd40aa308 ba4d13962dfdcebd31aa1283c7283a1d {"aliquot_tag": "ALQ_f082514a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.RNA-Seq.transcriptome.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.transcriptome.gdc_realn.bam 18773302545 BAM transcriptome harmonized CPTAC3 e72b850a-f46a-47b5-b330-f3f7e563ad6d f056dd13e6da918510ac013d62a66b9e {"aliquot_tag": "ALQ_c34e5354", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.RNA-Seq.transcriptome.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.transcriptome.gdc_realn.bam 19716562028 BAM transcriptome harmonized CPTAC3 832d14ca-506e-4b78-93b2-1fa4d857ba90 9d384715b4e781467ad51bc34c0b195b {"aliquot_tag": "ALQ_f082514a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.WGS.N C283515 GBM WGS blood_normal 7316UP-504-1105290 7316UP-504-1105290.WholeGenome.RP-2158.bam 62174322060 BAM submitted_aligned CPTAC3 7055e943-91d1-49a2-9191-e55ab3342d77 f131f1eafa114d3fb6290627ae38941f {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C283515.WGS.N.hg38 C283515 GBM WGS blood_normal 7316UP-504-1105290 da35ca10-4e9e-4188-9b4e-ca18d4fa1471_wgs_gdc_realn.bam 189605242037 BAM harmonized CPTAC3 64ff8172-9477-49e2-aab6-53ed112aa73c 8631a0fc11e7da3cbf6e12372b5dddbb {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C283515.WGS.R C283515 GBM WGS recurrent_tumor 7316UP-984-1105238 7316UP-984-1105238.WholeGenome.RP-2158.bam 52101605944 BAM submitted_aligned CPTAC3 02afa2ed-7278-4978-828d-79cc756ab420 44bdf05312430f53b2a3db3e035eb1aa {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.WGS.R.hg38 C283515 GBM WGS recurrent_tumor 7316UP-984-1105238 a2d2d8dc-08c5-4deb-8129-51b2cfc557fd_wgs_gdc_realn.bam 156734344990 BAM harmonized CPTAC3 d3eb1721-73d8-4f03-a305-0751b0da55ca 69930aa1e1727d71dc45833cd2ab330f {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.WXS.N C283515 GBM WXS blood_normal 7316UP-504-1105290 7316UP-504-1105290.WholeExome.RP-1303.bam 30160128143 BAM submitted_aligned CPTAC3 57eb649b-72ad-45ff-81a0-def3c0c38505 fc4b503aefc35200b0d5bd0cf28e6603 {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C283515.WXS.N.hg38 C283515 GBM WXS blood_normal 7316UP-504-1105290 da35ca10-4e9e-4188-9b4e-ca18d4fa1471_wxs_gdc_realn.bam 40814897842 BAM harmonized CPTAC3 679408e2-ec25-4d10-add0-74685052f3f9 8b5ff6d930c2c4a45565ccc5ce6fabc2 {"aliquot_tag": "ALQ_8a1dfde8", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C283515.WXS.R C283515 GBM WXS recurrent_tumor 7316UP-984-1105238 7316UP-984-1105238.WholeExome.RP-1303.bam 23037540650 BAM submitted_aligned CPTAC3 ced68fb8-edc5-4d38-9719-92d95bc271e2 859bc500872b17eb12a8f526187a918c {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C283515.WXS.R.hg38 C283515 GBM WXS recurrent_tumor 7316UP-984-1105238 a2d2d8dc-08c5-4deb-8129-51b2cfc557fd_wxs_gdc_realn.bam 31071829645 BAM harmonized CPTAC3 fea11175-c790-4201-9d99-141f860b9db7 61b3c9bc3a9a18a8e00e8ac245e930c7 {"aliquot_tag": "ALQ_67e44f63", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C283515.WXS.T C283515 GBM WXS tumor 7316UP-504-1105193 7316UP-504-1105193.WholeExome.RP-1303.bam 20800549103 BAM submitted_aligned CPTAC3 87308625-5842-4300-9202-99ba70be896c 2a7feccbefc6149e138f275c9ed84120 {"aliquot_tag": "ALQ_1152120b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C283515.WXS.T.hg38 C283515 GBM WXS tumor 7316UP-504-1105193 e251ee1d-1c35-4852-89fe-50fc2a4ac948_wxs_gdc_realn.bam 28429320980 BAM harmonized CPTAC3 5aa549bf-6059-4691-9a1a-dc2e334019b0 9c1e35a723770f901d91c9ff8f526175 {"aliquot_tag": "ALQ_1152120b", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C287328.DUP_182ecc01.WGS.R C287328 GBM WGS recurrent_tumor 7316UP-1135 7316UP-1135.WholeGenome.RP-2158.bam 53870261548 BAM submitted_aligned CPTAC3 027df95d-7ce1-400b-bfbd-cc83e17b3d36 a64b2c596f6b949358c720da3bc13709 {"aliquot_tag": "DUP_182ecc01", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.DUP_182ecc01.WGS.R.hg38 C287328 GBM WGS recurrent_tumor 7316UP-1135 60ab3dbf-0ea9-415f-b3f9-ece94aa19527_wgs_gdc_realn.bam 150326239194 BAM harmonized CPTAC3 ac862633-7552-4aeb-87be-e495530b4d2a ac3319b04d60c3806e2c8d6928310364 {"aliquot_tag": "DUP_182ecc01", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.DUP_3dba5939.MethArray.Green.T C287328 GBM Methylation_Array tumor 7316UP-534 205854140169_R07C01_Grn.idat 13677901 IDAT Green NA CPTAC3 4b16a4f5-e3d9-4e0f-ba76-8958d4bdbb1d 31184fd8c96812e40ed5edbb55695e95 {"aliquot_tag": "DUP_3dba5939", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.DUP_3dba5939.MethArray.Red.T C287328 GBM Methylation_Array tumor 7316UP-534 205854140169_R07C01_Red.idat 13677901 IDAT Red NA CPTAC3 49f15721-6812-4e14-9501-6f457865857e 72f7da59a1b554faa9e67f8308a8ef6b {"aliquot_tag": "DUP_3dba5939", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.miRNA-Seq.R.hg38 C287328 GBM miRNA-Seq recurrent_tumor 7316UP-1135-1104790 777da03c-ca29-4efd-b7c2-4649e0ec4077_mirnaseq_gdc_realn.bam 369364097 BAM harmonized CPTAC3 39f3d534-e8b3-4249-89dd-f3a39a6046aa 9d96509c88b6b9dbf5486fc1c2c7d647 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.miRNA-Seq.S21_L001_R1.T C287328 GBM miRNA-Seq tumor 7316UP-534-1104760 210817_UNC31-K00269_0302_AHLCTHBBXY_GTTTCG_S21_L001_R1_001.unaln.bam 184222286 BAM S21_L001_R1 submitted_unaligned CPTAC3 18e06801-e85c-4849-be82-e07ac019cad0 9f9fc54c80582aea95011acf17584bc7 {"aliquot_tag": "ALQ_58c5ffaa", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.miRNA-Seq.S42_L002_R1.R C287328 GBM miRNA-Seq recurrent_tumor 7316UP-1135-1104790 210817_UNC31-K00269_0302_AHLCTHBBXY_TTAGGC_S42_L002_R1_001.unaln.bam 319199191 BAM S42_L002_R1 submitted_unaligned CPTAC3 2fa9a70d-1712-496a-9d14-4e6f844aa5e6 d6c1e358d22ebe37c6b9535913b9a776 {"aliquot_tag": "ALQ_bb530617", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.miRNA-Seq.T.hg38 C287328 GBM miRNA-Seq tumor 7316UP-534-1104760 9b407be1-010b-4c13-be84-c2dbacb91487_mirnaseq_gdc_realn.bam 213128225 BAM harmonized CPTAC3 960726d8-2892-4644-a503-cd3db12b5264 2a2cfb79f30162f33200e30fdcd83405 {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.RNA-Seq.chimeric.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.chimeric.gdc_realn.bam 60013403 BAM chimeric harmonized CPTAC3 7ba8b976-b83f-43da-b05f-cb77b0b32c3a a773957cabcb5a859ded9e69a9845dd1 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.RNA-Seq.chimeric.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.chimeric.gdc_realn.bam 154629104 BAM chimeric harmonized CPTAC3 03258bd7-d683-4dc8-bd6e-e6d1ee6e7e13 5ebb5aa37fb2e67342713c1b1b495db4 {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.RNA-Seq.genomic.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.genomic.gdc_realn.bam 10333048636 BAM genomic harmonized CPTAC3 da1d494b-44f0-4d5a-8782-4747759fb8be ce300bb3dcb2859d7f6cfd7e18251278 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.RNA-Seq.genomic.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.genomic.gdc_realn.bam 8476784443 BAM genomic harmonized CPTAC3 aaf5ce71-ec46-4424-a311-501e099d4b44 2e1c4bd66980dd615a5f87e1dfe121ea {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.RNA-Seq.S4_L001_R1.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R1_001.fastq.gz 3650680707 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 1500544e-8a1a-4d0d-a855-c856fd31993b 229fc5ee36a221a91f1159576d80a1ee {"aliquot_tag": "ALQ_bb530617", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.RNA-Seq.S4_L001_R1.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R1_001.fastq.gz 4021895606 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57 58b126fcbf37c33292d56137155292c3 {"aliquot_tag": "ALQ_58c5ffaa", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.RNA-Seq.S4_L001_R2.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R2_001.fastq.gz 4282999398 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 60d74915-2063-4467-930b-7845844fbd7b cb3087afa930b32fd23922a9c623fadf {"aliquot_tag": "ALQ_bb530617", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.RNA-Seq.S4_L001_R2.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R2_001.fastq.gz 4377680066 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 7bd1a599-d790-46ba-8d41-5c9532d1d232 ba61722d8b1b8d6d26596de4f1ef9a95 {"aliquot_tag": "ALQ_58c5ffaa", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.RNA-Seq.transcriptome.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.transcriptome.gdc_realn.bam 12437782701 BAM transcriptome harmonized CPTAC3 c27b66ae-17a0-433b-932f-95f65c86ed75 090f806dd83c1e9e88cf8261c680d5c3 {"aliquot_tag": "ALQ_bb530617", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.RNA-Seq.transcriptome.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.transcriptome.gdc_realn.bam 16569774458 BAM transcriptome harmonized CPTAC3 11a248ab-ba9d-4dbb-8a94-05c70d9dd30a e212c6e224c05f133352edc8766ad938 {"aliquot_tag": "ALQ_58c5ffaa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.WGS.T C287328 GBM WGS tumor 7316UP-534-1105223 7316UP-534-1105223.WholeGenome.RP-2158.bam 61841060561 BAM submitted_aligned CPTAC3 2f8bfbdb-c5ab-49f7-a398-3130a8a0f9ff 710f86254a1a9e9a702ceaaa9309c532 {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.WGS.T.hg38 C287328 GBM WGS tumor 7316UP-534-1105223 198d468f-807f-4fbc-80c3-db5d8d0b859f_wgs_gdc_realn.bam 182584284428 BAM harmonized CPTAC3 a3bcdd86-6bcb-408f-ba68-c4e56a8110ba 6510f6f33772d6d2c099f6216b400a88 {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.WXS.N C287328 GBM WXS blood_normal 7316UP-534-1105211 7316UP-534-1105211.WholeExome.RP-1303.bam 26048801345 BAM submitted_aligned CPTAC3 aa55c9e6-5f54-4642-a1f3-aa5110440f74 5dca536e5e11f8efadaadb3d771773d0 {"aliquot_tag": "ALQ_def4fc75", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C287328.WXS.N.hg38 C287328 GBM WXS blood_normal 7316UP-534-1105211 45e6c90a-cad9-48e8-825c-524447251d9d_wxs_gdc_realn.bam 35548163635 BAM harmonized CPTAC3 15e46e1d-5773-424e-9e9b-3707fd58322a 5f0b304e25a5054dcd3d2f02eb26b297 {"aliquot_tag": "ALQ_def4fc75", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C287328.WXS.R C287328 GBM WXS recurrent_tumor 7316UP-1135-1105253 7316UP-1135-1105253.WholeExome.RP-1303.bam 23940352912 BAM submitted_aligned CPTAC3 3c2e153d-dd81-4764-b6fd-a067c9a47d00 aa015c300f779af99554699383c99e68 {"aliquot_tag": "ALQ_3098bd2f", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C287328.WXS.R.hg38 C287328 GBM WXS recurrent_tumor 7316UP-1135-1105253 d95e214e-46ad-4a63-b086-330764303d0d_wxs_gdc_realn.bam 32463143532 BAM harmonized CPTAC3 0767b6c1-462b-482e-ae62-eead44df14b1 b27b580825b0ad97623eb1450a0f4573 {"aliquot_tag": "ALQ_3098bd2f", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C287328.WXS.T C287328 GBM WXS tumor 7316UP-534-1105223 7316UP-534-1105223.WholeExome.RP-1303.bam 22424204561 BAM submitted_aligned CPTAC3 0a3a21a5-e572-44f0-ad0b-3adcd908f5c9 95beb26fb18fa9b6d5521c618c2fd0c5 {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C287328.WXS.T.hg38 C287328 GBM WXS tumor 7316UP-534-1105223 198d468f-807f-4fbc-80c3-db5d8d0b859f_wxs_gdc_realn.bam 30300912433 BAM harmonized CPTAC3 bc0a38db-f504-49c1-b50f-25b1cc7af943 617d9b9a27b328d30a365d63c5b8039f {"aliquot_tag": "ALQ_1bd7ce9a", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C289419.DUP_4747d148.MethArray.Green.R C289419 GBM Methylation_Array recurrent_tumor 7316UP-587 205705520096_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 583ac14a-de77-42ed-8d3f-6baf457b0e47 b846053f197573329034273b1aa86a4e {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.DUP_4747d148.MethArray.Red.R C289419 GBM Methylation_Array recurrent_tumor 7316UP-587 205705520096_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 3323405a-948f-4042-80d5-2378ea7dedb7 02449a07c8599bc956fea32a0df1c222 {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.DUP_4747d148.WGS.R C289419 GBM WGS recurrent_tumor 7316UP-587 7316UP-587.WholeGenome.RP-2158.bam 55102241327 BAM submitted_aligned CPTAC3 78c622ca-de9d-4208-9ee5-7c5be7e50bcd c51145d3c43b87a842dddf9679f9f666 {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.DUP_4747d148.WGS.R.hg38 C289419 GBM WGS recurrent_tumor 7316UP-587 475005fe-89ac-4683-9abc-a6b861063f3d_wgs_gdc_realn.bam 163224253840 BAM harmonized CPTAC3 fdce7121-072b-4afc-bb06-141ac3a6abc3 31ed465910ff2a44bc04e0cdd258790e {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.DUP_4747d148.WXS.R C289419 GBM WXS recurrent_tumor 7316UP-587 7316UP-587.WholeExome.RP-1303.bam 25018513643 BAM submitted_aligned CPTAC3 77a7e8d5-aa0f-4598-891a-4bd243f8d40d b7dc79e71b7b53f82af6dcb4cbb2ee22 {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.DUP_4747d148.WXS.R.hg38 C289419 GBM WXS recurrent_tumor 7316UP-587 475005fe-89ac-4683-9abc-a6b861063f3d_wxs_gdc_realn.bam 86608571475 BAM harmonized CPTAC3 161cc500-79dd-44f1-a3be-d36f93361df7 1e7dd8bc3b0ed243891bc86fd7c0f2fe {"aliquot_tag": "DUP_4747d148", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C289419.DUP_ebf29e44.MethArray.Green.T C289419 GBM Methylation_Array tumor 7316UP-547 205555380097_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ed9668f6-8b96-4536-975f-51fc578f4702 ff7166a175272594659db42e8fbf97ad {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.DUP_ebf29e44.MethArray.Red.T C289419 GBM Methylation_Array tumor 7316UP-547 205555380097_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 06ca8f2e-4333-44c5-992a-44533882b195 8174e4829fdc0d2f4c083428d2a0bfd0 {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.DUP_ebf29e44.WGS.T C289419 GBM WGS tumor 7316UP-547 7316UP-547.WholeGenome.RP-2158.bam 54186350616 BAM submitted_aligned CPTAC3 fb931cb0-6b32-4e8f-b0b9-8bc0f8097750 597eddbc14f6e0d0f7df3b8918a88b3d {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.DUP_ebf29e44.WGS.T.hg38 C289419 GBM WGS tumor 7316UP-547 4d704111-c691-4670-b26a-c087157c5729_wgs_gdc_realn.bam 162941984332 BAM harmonized CPTAC3 87df8153-1621-45ef-84f6-475e6b344c45 86d0f1ae54c3427fe8bcb74c8ba3630d {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.DUP_ebf29e44.WXS.T C289419 GBM WXS tumor 7316UP-547 7316UP-547.WholeExome.RP-1303.bam 41078607528 BAM submitted_aligned CPTAC3 cc5a2977-b9a0-4292-9f2e-7e2fc2f183da 1773a62155a9c13ed4f01b9dd9af3c63 {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.DUP_ebf29e44.WXS.T.hg38 C289419 GBM WXS tumor 7316UP-547 4d704111-c691-4670-b26a-c087157c5729_wxs_gdc_realn.bam 57598635661 BAM harmonized CPTAC3 56d4c848-6cf4-4228-ad97-d3ab5056812d 1d2468e27f9d57ec272c6106350b1131 {"aliquot_tag": "DUP_ebf29e44", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C289419.miRNA-Seq.R.hg38 C289419 GBM miRNA-Seq recurrent_tumor 7316UP-587-1104762 8f969309-dc45-40b0-b623-00f7d7895b73_mirnaseq_gdc_realn.bam 420583627 BAM harmonized CPTAC3 2515679a-16a4-4c48-8e7c-27778bccf3ec 057ff54cef6050a312dd966d33054057 {"aliquot_tag": "ALQ_77a659b4", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.miRNA-Seq.S16_L001_R1.R C289419 GBM miRNA-Seq recurrent_tumor 7316UP-587-1104762 210817_UNC31-K00269_0302_AHLCTHBBXY_GAGTGG_S16_L001_R1_001.unaln.bam 358193007 BAM S16_L001_R1 submitted_unaligned CPTAC3 5c73e592-f5eb-461c-99c2-99d834cf8749 02e20b5d1c54f84a5eb198af8bdd6cf3 {"aliquot_tag": "ALQ_77a659b4", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.miRNA-Seq.S18_L003_R1.T C289419 GBM miRNA-Seq tumor 7316UP-547-1104805 210817_UNC31-K00269_0302_AHLCTHBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 189609311 BAM S18_L003_R1 submitted_unaligned CPTAC3 03b0c8c5-4ebc-43dc-b603-8b14995f8831 934836fc337e4e87305a531b0d5d8628 {"aliquot_tag": "ALQ_aef8cc22", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.miRNA-Seq.T.hg38 C289419 GBM miRNA-Seq tumor 7316UP-547-1104805 38fa8f97-9447-4e3e-b7bf-6fa003e798bc_mirnaseq_gdc_realn.bam 217779080 BAM harmonized CPTAC3 c5b80362-7fad-4c2b-a7ac-83abe32e9c3f 3e701c905cb6921fe6730cfe887ab932 {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.RNA-Seq.chimeric.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.chimeric.gdc_realn.bam 72317694 BAM chimeric harmonized CPTAC3 11b3a88b-5a03-4efb-95e7-d9a67cb204c4 bc548b3fbea02a43d4f0c3cfc61a91f3 {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.RNA-Seq.genomic.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.genomic.gdc_realn.bam 7955591268 BAM genomic harmonized CPTAC3 ae9fdcdd-bfb0-402d-9231-fb9cd8ec8544 916faea0ceea9e3e3235b423c701de64 {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.RNA-Seq.S18_L005_R1.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R1_001.fastq.gz 3682036039 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 31e45219-fd63-4028-9ca3-e3fa1ca82f60 c4ac7bb02c993a73d08b25f155dd0b73 {"aliquot_tag": "ALQ_aef8cc22", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.RNA-Seq.S18_L005_R2.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R2_001.fastq.gz 3881768353 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 cd0e07cb-3358-4e26-88fa-5cc0839cda33 daa166c1651c07a9f6cbb173c0f67278 {"aliquot_tag": "ALQ_aef8cc22", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.RNA-Seq.transcriptome.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.transcriptome.gdc_realn.bam 15674380411 BAM transcriptome harmonized CPTAC3 a8417476-7393-4f8f-9daa-215648417fa7 1153c3c1da2acca1bd8ad4069a7e6acf {"aliquot_tag": "ALQ_aef8cc22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.WGS.N C289419 GBM WGS blood_normal 7316UP-587-1105213 7316UP-587-1105213.WholeGenome.RP-2158.bam 52502221675 BAM submitted_aligned CPTAC3 e90c2130-4037-4410-8cb5-da284867906a d56b3b3bb5560ba9fe58e74871ce6f12 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C289419.WGS.N.hg38 C289419 GBM WGS blood_normal 7316UP-587-1105213 6d9ca0ff-6baf-4667-aada-5fc3f89a2cc0_wgs_gdc_realn.bam 152202150533 BAM harmonized CPTAC3 3206bc3b-648f-40f0-90d4-3914a2173ae6 23fd00960729f7e47d97f48dac532e06 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C289419.WGS.R C289419 GBM WGS recurrent_tumor 7316UP-587-1105225 7316UP-587-1105225.WholeGenome.RP-2158.bam 56534424736 BAM submitted_aligned CPTAC3 3ae88dfc-f9c8-465c-8f37-74196b627a80 70f5e0df7a795a4db9ea993fc3f5f8f6 {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.WGS.R.hg38 C289419 GBM WGS recurrent_tumor 7316UP-587-1105225 cc0ee50b-2361-4e4a-ba62-b66137405b80_wgs_gdc_realn.bam 159336122594 BAM harmonized CPTAC3 387f2766-5e69-4ca0-a98f-76ea8bac00a3 b4bb791e43434adfbe8bbde7b56139b6 {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.WGS.T C289419 GBM WGS tumor 7316UP-547-1105270 7316UP-547-1105270.WholeGenome.RP-2158.bam 54527158005 BAM submitted_aligned CPTAC3 849c3fa9-d265-4a34-b1c5-a6130045cb7a 1f87f8293ae9164dbbe959327d6cf54e {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.WGS.T.hg38 C289419 GBM WGS tumor 7316UP-547-1105270 1db3a7f3-a22c-4898-82e3-8957c1238080_wgs_gdc_realn.bam 158317583519 BAM harmonized CPTAC3 66088cb3-52d4-4923-80d8-c9f6467076ab 0af2da871705865d2ed9bbbfd873dcb0 {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.WXS.N C289419 GBM WXS blood_normal 7316UP-587-1105213 7316UP-587-1105213.WholeExome.RP-1303.bam 25496316378 BAM submitted_aligned CPTAC3 d0e8eefb-202d-4629-9acd-a94b4e1864a9 f0e7da22f9e92d614643f3de6a965016 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C289419.WXS.N.hg38 C289419 GBM WXS blood_normal 7316UP-587-1105213 6d9ca0ff-6baf-4667-aada-5fc3f89a2cc0_wxs_gdc_realn.bam 34647910087 BAM harmonized CPTAC3 2d7988a7-00be-41aa-89f9-05b70794185e 8e6c36a0088904377baa04a3b34e4c45 {"aliquot_tag": "ALQ_f1975a6b", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C289419.WXS.R C289419 GBM WXS recurrent_tumor 7316UP-587-1105225 7316UP-587-1105225.WholeExome.RP-1303.bam 22476273863 BAM submitted_aligned CPTAC3 39fd310f-e21d-484e-8764-95478d310803 be5b306cd0b545b5d3e9b9423d825f0d {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C289419.WXS.R.hg38 C289419 GBM WXS recurrent_tumor 7316UP-587-1105225 cc0ee50b-2361-4e4a-ba62-b66137405b80_wxs_gdc_realn.bam 30749277855 BAM harmonized CPTAC3 a3be227a-3efb-49fb-b435-1885f567a6e5 9e3a772df0d6106592442d4fdd8faabc {"aliquot_tag": "ALQ_33d9ac9d", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C289419.WXS.T C289419 GBM WXS tumor 7316UP-547-1105270 7316UP-547-1105270.WholeExome.RP-1303.bam 27840699156 BAM submitted_aligned CPTAC3 a28c6ed4-40bd-415b-b9c7-590a62ec8555 4f192acbc7a33bd084063a0e6de9ab52 {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C289419.WXS.T.hg38 C289419 GBM WXS tumor 7316UP-547-1105270 1db3a7f3-a22c-4898-82e3-8957c1238080_wxs_gdc_realn.bam 38434530527 BAM harmonized CPTAC3 7ca5f822-55be-4e81-81e4-5542cf2b6fe1 415deb3fc0d9dedd75888f8d951c99d6 {"aliquot_tag": "ALQ_24f84cd9", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C298152.DUP_59d69c3d.MethArray.Green.R C298152 GBM Methylation_Array recurrent_tumor 7316UP-574 205555380064_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 edaada5d-7321-4231-ad85-c55ca06dd1f0 fc651c84f9143e9d3cb969da5084bacd {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.DUP_59d69c3d.MethArray.Red.R C298152 GBM Methylation_Array recurrent_tumor 7316UP-574 205555380064_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 23407a16-a55f-4ac6-9250-7ce0718eca1f 786c81259392e0ac00b88d4feb94457f {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.DUP_59d69c3d.WGS.R C298152 GBM WGS recurrent_tumor 7316UP-574 7316UP-574.WholeGenome.RP-2158.bam 63229930879 BAM submitted_aligned CPTAC3 28e504fa-7e48-49d6-84bd-6f5ab234a166 1a2d41be9ed8fdd547ea211146b54333 {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.DUP_59d69c3d.WGS.R.hg38 C298152 GBM WGS recurrent_tumor 7316UP-574 7130d870-9836-4df0-a895-94a82a91781a_wgs_gdc_realn.bam 190684301834 BAM harmonized CPTAC3 e7c01984-0f48-489b-8644-5e8b61780d1a b2e6e1c7569b79655ee53130d3aa5d8a {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.DUP_59d69c3d.WXS.R C298152 GBM WXS recurrent_tumor 7316UP-574 7316UP-574.WholeExome.RP-1303.bam 22111980929 BAM submitted_aligned CPTAC3 39dcc1cd-5629-4b3b-9842-e60f92135a92 d0e7aa642f1dcfb5ab6cdf5567663ed4 {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.DUP_59d69c3d.WXS.R.hg38 C298152 GBM WXS recurrent_tumor 7316UP-574 7130d870-9836-4df0-a895-94a82a91781a_wxs_gdc_realn.bam 30062262908 BAM harmonized CPTAC3 2f2efdd7-991e-4ea9-96e0-e166ec2aa41b 5e1ca43bf089a5b7eaa0a1c6000622b1 {"aliquot_tag": "DUP_59d69c3d", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C298152.DUP_cb6d6363.MethArray.Green.T C298152 GBM Methylation_Array tumor 7316UP-426 205854150030_R01C01_Grn.idat 13677903 IDAT Green NA CPTAC3 67b08732-3e8e-443c-a0ff-890c3d056538 d23037edf01388fa9b3628ff39337e42 {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.DUP_cb6d6363.MethArray.Red.T C298152 GBM Methylation_Array tumor 7316UP-426 205854150030_R01C01_Red.idat 13677903 IDAT Red NA CPTAC3 84143f71-2af0-4fb1-84df-83d52574634d 6754a885a5cb2dbfdf33354c0df6e3ee {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.DUP_cb6d6363.WGS.T C298152 GBM WGS tumor 7316UP-426 7316UP-426.WholeGenome.RP-2158.bam 58796212790 BAM submitted_aligned CPTAC3 6cce2775-8b95-4d16-9214-9c8ea3941e00 ba0ee3e9e28eaaaf258434659d568a9f {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.DUP_cb6d6363.WGS.T.hg38 C298152 GBM WGS tumor 7316UP-426 2359e710-f546-4a7d-9b12-c9c3028c8b92_wgs_gdc_realn.bam 175199001890 BAM harmonized CPTAC3 fddc2fe2-8b91-4754-bf9c-cb63b03f66ae 88598256707fd8a08dbfc78aa78c8e5d {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.DUP_cb6d6363.WXS.T C298152 GBM WXS tumor 7316UP-426 7316UP-426.WholeExome.RP-1303.bam 29302896556 BAM submitted_aligned CPTAC3 7d0482ee-89c1-4be6-80d5-b182cac71f87 84f5f9e3cb5183ba0a37b845535cdf96 {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.DUP_cb6d6363.WXS.T.hg38 C298152 GBM WXS tumor 7316UP-426 2359e710-f546-4a7d-9b12-c9c3028c8b92_wxs_gdc_realn.bam 39654770362 BAM harmonized CPTAC3 96617688-1ee2-4e4a-b128-6e170cee9966 8e7d71c36ad0999daad8eb8ea266fe65 {"aliquot_tag": "DUP_cb6d6363", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C298152.miRNA-Seq.R.hg38 C298152 GBM miRNA-Seq recurrent_tumor 7316UP-574-1104761 a7688766-868f-4b62-b5e8-34c2a5d55256_mirnaseq_gdc_realn.bam 299273196 BAM harmonized CPTAC3 91799c2b-02c3-4303-9427-3dd47f4acaf1 3ca45c3c34aa1585baf25c847e1a166d {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.miRNA-Seq.S13_L001_R1.R C298152 GBM miRNA-Seq recurrent_tumor 7316UP-574-1104761 210817_UNC31-K00269_0302_AHLCTHBBXY_CGTACG_S13_L001_R1_001.unaln.bam 259115918 BAM S13_L001_R1 submitted_unaligned CPTAC3 9dcdfaea-d092-42e1-a687-95d151494b95 ce3ef63625f6f336770eea431e71dc86 {"aliquot_tag": "ALQ_26296f46", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.miRNA-Seq.S32_L002_R1.T C298152 GBM miRNA-Seq tumor 7316UP-426-1104798 210817_UNC31-K00269_0302_AHLCTHBBXY_GGCTAC_S32_L002_R1_001.unaln.bam 323725172 BAM S32_L002_R1 submitted_unaligned CPTAC3 13875ba7-959b-4cf8-950a-80da1a1fce6c e00929cd3417534f37b281689e6dccd3 {"aliquot_tag": "ALQ_d13cf72f", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.miRNA-Seq.T.hg38 C298152 GBM miRNA-Seq tumor 7316UP-426-1104798 3a90dd24-dab0-492d-b2a5-aef0575221ce_mirnaseq_gdc_realn.bam 379104263 BAM harmonized CPTAC3 f6d87ff9-7cf0-45b9-b81e-4f0643ef93ff 6634fdbdc3ad6400852be5d3d6c8e0e7 {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.RNA-Seq.chimeric.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.chimeric.gdc_realn.bam 57710791 BAM chimeric harmonized CPTAC3 4f6eee50-b75d-4cb5-850d-6e5d1c0935a4 6d5e30c4321ec01e1b4e6cda8fac3e62 {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.RNA-Seq.chimeric.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.chimeric.gdc_realn.bam 138598553 BAM chimeric harmonized CPTAC3 433783fb-5b4d-41bd-9d2b-11e1aa75f5bd 9059407aee331cc59efa70c633e2f0d7 {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.RNA-Seq.genomic.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.genomic.gdc_realn.bam 8402037730 BAM genomic harmonized CPTAC3 a95076f7-665f-4db1-bd24-92df0fab9f9d 81d677a79efa836e021742c99ff0ca2e {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.RNA-Seq.genomic.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.genomic.gdc_realn.bam 9092434487 BAM genomic harmonized CPTAC3 d550de2a-003c-4124-93d9-ecb3bc8ae815 5b34f2a1f44db529a2416d34f0156765 {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.RNA-Seq.S19_L005_R1.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R1_001.fastq.gz 4161951146 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 dbcc610d-609b-4631-a7fb-ce1d9879e0a1 d6288d6b5fc855cf5d326a658a70c4c6 {"aliquot_tag": "ALQ_d13cf72f", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.RNA-Seq.S19_L005_R2.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R2_001.fastq.gz 4490884067 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 96a07c32-d50d-48da-b9da-fdd6b37eac1c 45cf661e35c8c83818097b8cc6ff1945 {"aliquot_tag": "ALQ_d13cf72f", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.RNA-Seq.S8_L002_R1.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3775818479 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 cc854351-5e28-4fa1-ba76-ab67e8069f29 a1efd734093839f29919f5946bf12066 {"aliquot_tag": "ALQ_26296f46", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.RNA-Seq.S8_L002_R2.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4074073377 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 114ff49b-5eae-4fa1-8beb-1f4ae9cd8638 e349aa1bad948aafbbb6f63629cc8078 {"aliquot_tag": "ALQ_26296f46", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.RNA-Seq.transcriptome.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.transcriptome.gdc_realn.bam 17759110838 BAM transcriptome harmonized CPTAC3 c8a10008-2b2b-40e5-b0ed-1b56073ab93f d68cf029185bebcbc508e9d0a71befe8 {"aliquot_tag": "ALQ_26296f46", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.RNA-Seq.transcriptome.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.transcriptome.gdc_realn.bam 16035355872 BAM transcriptome harmonized CPTAC3 3e7aee56-96b3-4835-a10c-b08ee18db184 ac3790e2ea90a1ced79981a5a7ffd77d {"aliquot_tag": "ALQ_d13cf72f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.WGS.N C298152 GBM WGS blood_normal 7316UP-426-1105208 7316UP-426-1105208.WholeGenome.RP-2158.bam 52239643037 BAM submitted_aligned CPTAC3 9ff18167-b8d3-4e22-9eb1-629b71ec9e77 a15b0b8109d677e2370d43cb3fb6333e {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C298152.WGS.N.hg38 C298152 GBM WGS blood_normal 7316UP-426-1105208 d4007c3c-2941-40e3-a88d-57c532441433_wgs_gdc_realn.bam 152595568147 BAM harmonized CPTAC3 d58f2823-1d0b-4d87-a8cf-60d3880cad66 a8921378597d2f8871525aa2b2847aa7 {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C298152.WGS.R C298152 GBM WGS recurrent_tumor 7316UP-574-1105224 7316UP-574-1105224.WholeGenome.RP-2158.bam 41014723398 BAM submitted_aligned CPTAC3 c820d71e-45d9-42a5-afb5-f663772bf93d 082d90ab89f83e5c7d1ada5af831b00e {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.WGS.R.hg38 C298152 GBM WGS recurrent_tumor 7316UP-574-1105224 5474e855-4847-4ff2-a327-8538e6c5b855_wgs_gdc_realn.bam 120088532371 BAM harmonized CPTAC3 d90a6d1d-8815-4c36-bf25-7ac3437c9dc7 b83c3e505aeb361609c124d5af7edcf0 {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.WGS.T C298152 GBM WGS tumor 7316UP-426-1105263 7316UP-426-1105263.WholeGenome.RP-2158.bam 49286697852 BAM submitted_aligned CPTAC3 deecc9f5-4d5e-4279-8878-4dcf92b9cfee bf1510636c4b5b3ff54cfe5b7c7d406c {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.WGS.T.hg38 C298152 GBM WGS tumor 7316UP-426-1105263 45164d3a-0a7f-498f-a025-eae34981591f_wgs_gdc_realn.bam 144012196964 BAM harmonized CPTAC3 32e43bb8-4fb5-4435-99b0-f09f6f817dd0 e51d20ce4d30ade18f4081a28ea3c014 {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.WXS.N C298152 GBM WXS blood_normal 7316UP-426-1105208 7316UP-426-1105208.WholeExome.RP-1303.bam 25672742169 BAM submitted_aligned CPTAC3 7d887a99-c66a-4607-90ca-bb8dfd2859f6 e7f60cbe275f19228a27c22a4b43cd23 {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C298152.WXS.N.hg38 C298152 GBM WXS blood_normal 7316UP-426-1105208 d4007c3c-2941-40e3-a88d-57c532441433_wxs_gdc_realn.bam 34782271499 BAM harmonized CPTAC3 353a8df5-cb48-4786-81c4-74d7ad90a33d b50a53536c98c19fc5dc6bc0a008e3c8 {"aliquot_tag": "ALQ_be89e9e8", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C298152.WXS.R C298152 GBM WXS recurrent_tumor 7316UP-574-1105224 7316UP-574-1105224.WholeExome.RP-1303.bam 22495865946 BAM submitted_aligned CPTAC3 f94f3fac-a780-4952-9e78-6e1ef8bbec9d 0e68bc03268af8b4b48bc603833bea35 {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C298152.WXS.R.hg38 C298152 GBM WXS recurrent_tumor 7316UP-574-1105224 5474e855-4847-4ff2-a327-8538e6c5b855_wxs_gdc_realn.bam 30187839362 BAM harmonized CPTAC3 4931cd9f-a5c7-4482-9a7f-702b8eda4ab6 93b1439363e56482638b808097c0f8a2 {"aliquot_tag": "ALQ_8c58fb43", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C298152.WXS.T C298152 GBM WXS tumor 7316UP-426-1105263 7316UP-426-1105263.WholeExome.RP-1303.bam 23507037727 BAM submitted_aligned CPTAC3 df9aa884-5b5b-4f19-89e3-732c4a4a45f3 d9b5e1d6e45d8acc274a4be19ac51d4a {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C298152.WXS.T.hg38 C298152 GBM WXS tumor 7316UP-426-1105263 45164d3a-0a7f-498f-a025-eae34981591f_wxs_gdc_realn.bam 31745175469 BAM harmonized CPTAC3 83633780-d4aa-48d6-bf32-90efafb8eb91 6a3cf55a938afe32619c18e1acbbf2c7 {"aliquot_tag": "ALQ_7f0197e6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C317832.DUP_4b7f0398.MethArray.Green.T C317832 GBM Methylation_Array tumor 7316UP-435 205705520087_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d3bee606-2dd4-4825-8aaf-62a416cbdc44 3f48c6a17d87a4953d197e1ffd0fa080 {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.DUP_4b7f0398.MethArray.Red.T C317832 GBM Methylation_Array tumor 7316UP-435 205705520087_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 3917878c-105b-473b-bca9-10ebb2572b6e 27747077b0dc4bebc0038a9316758c48 {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.DUP_4b7f0398.WGS.T C317832 GBM WGS tumor 7316UP-435 7316UP-435.WholeGenome.RP-2158.bam 53288759776 BAM submitted_aligned CPTAC3 e46c08f7-a93d-4c16-b65a-040c13d4e967 5268fb201438283101da1715c0a3d98d {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.DUP_4b7f0398.WGS.T.hg38 C317832 GBM WGS tumor 7316UP-435 a8de32a7-4eaf-498c-8b3f-17a2c36aba44_wgs_gdc_realn.bam 160872598512 BAM harmonized CPTAC3 90d89778-ba90-4096-b585-894a2c7a81f2 1b8e6214b88cb7b9ce576374d831cd7b {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.DUP_4b7f0398.WXS.T C317832 GBM WXS tumor 7316UP-435 7316UP-435.WholeExome.RP-1303.bam 28697889466 BAM submitted_aligned CPTAC3 f7cc3fc4-a124-47a5-8153-75799ffb0d7b 1cf98d6fe9f802bc2e960d58c29c3d8a {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.DUP_4b7f0398.WXS.T.hg38 C317832 GBM WXS tumor 7316UP-435 a8de32a7-4eaf-498c-8b3f-17a2c36aba44_wxs_gdc_realn.bam 38774843412 BAM harmonized CPTAC3 5b5d151b-3c7f-423a-9684-a301d78e9be5 04fd3a018e77c40cae34efe02bd3c072 {"aliquot_tag": "DUP_4b7f0398", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C317832.MethArray.Green.R C317832 GBM Methylation_Array recurrent_tumor 7316UP-1110 205707890105_R02C01_Grn.idat 13677915 IDAT Green NA CPTAC3 c1a97839-5772-45fa-91e7-426e00766c41 1d3cf81fbea33c2bdfe529ca75754a4e {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C317832.MethArray.Red.R C317832 GBM Methylation_Array recurrent_tumor 7316UP-1110 205707890105_R02C01_Red.idat 13677915 IDAT Red NA CPTAC3 3710e0b6-75b9-466e-ba27-ee1120dca7e5 b4dc0f7f1242031ec281e7599ef03dda {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C317832.WGS.N C317832 GBM WGS blood_normal 7316UP-435-1105209 7316UP-435-1105209.WholeGenome.RP-2158.bam 50849044617 BAM submitted_aligned CPTAC3 91c2215c-9340-4ea4-a15e-783589faf7b6 5f75808e11126920dfc3de0631e194bd {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C317832.WGS.N.hg38 C317832 GBM WGS blood_normal 7316UP-435-1105209 304f74bd-879e-4f3c-bdb4-46d22910393e_wgs_gdc_realn.bam 153978766927 BAM harmonized CPTAC3 0fa25367-cd71-4bee-a9ce-c0487935bf1a 78ead454bfe95122ee9c6cef48b94146 {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C317832.WGS.R C317832 GBM WGS recurrent_tumor 7316UP-1110 7316UP-1110.WholeGenome.RP-2158.bam 56423818859 BAM submitted_aligned CPTAC3 02482033-178d-4b98-a21e-18bcd9afb7b1 3975b29b666a7d917f8fb6c2078c99a0 {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C317832.WGS.R.hg38 C317832 GBM WGS recurrent_tumor 7316UP-1110 3c191d52-d917-4258-97ff-2dabca4cf093_wgs_gdc_realn.bam 173377160966 BAM harmonized CPTAC3 b5586575-0b82-4089-9cc3-20236ae7f701 98ab8f4e1d4bc72f0b1c5b40a6a78ceb {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C317832.WGS.T C317832 GBM WGS tumor 7316UP-435-1105196 7316UP-435-1105196.WholeGenome.RP-2158.bam 44958525818 BAM submitted_aligned CPTAC3 84e61057-d0fb-4f04-b775-d961860a52f4 07cce07c15dcefaa9c313ada9d20d0f1 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.WGS.T.hg38 C317832 GBM WGS tumor 7316UP-435-1105196 88fc297c-04d4-4bbe-885c-794e65593177_wgs_gdc_realn.bam 133085101660 BAM harmonized CPTAC3 6c345d12-741e-4e98-abfd-337cc774d958 1282fec44ab93ffbcdd71fa7814eac82 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.WXS.N C317832 GBM WXS blood_normal 7316UP-435-1105209 7316UP-435-1105209.WholeExome.RP-1303.bam 26556342235 BAM submitted_aligned CPTAC3 dcb115cc-591d-4eb6-a360-64d4b9d86ef8 31456f5e09f8ed511edbdd6a0646c2ce {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C317832.WXS.N.hg38 C317832 GBM WXS blood_normal 7316UP-435-1105209 304f74bd-879e-4f3c-bdb4-46d22910393e_wxs_gdc_realn.bam 36135119685 BAM harmonized CPTAC3 2c9924aa-a2fe-4497-ad2d-c730d2f900b5 c7ff4648bf118a492abf66395a7adef8 {"aliquot_tag": "ALQ_1fc18e85", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C317832.WXS.R C317832 GBM WXS recurrent_tumor 7316UP-1110 7316UP-1110.WholeExome.RP-1303.bam 27081556019 BAM submitted_aligned CPTAC3 e447bddd-4fa5-4877-993f-40f7483e19ee 1f7687a300143d6162d55f88efeae176 {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C317832.WXS.R.hg38 C317832 GBM WXS recurrent_tumor 7316UP-1110 3c191d52-d917-4258-97ff-2dabca4cf093_wxs_gdc_realn.bam 36664412702 BAM harmonized CPTAC3 00db774a-2523-429b-9601-fdae463fcf73 c54f6f333989b0f6b41f7ec2c68c69a4 {"aliquot_tag": "ALQ_5a725a0c", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C317832.WXS.T C317832 GBM WXS tumor 7316UP-435-1105196 7316UP-435-1105196.WholeExome.RP-1303.bam 27481233727 BAM submitted_aligned CPTAC3 e02a9123-6688-4178-8677-89fd8134cc3d 9facaec81129600431524af4a6ec85f7 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C317832.WXS.T.hg38 C317832 GBM WXS tumor 7316UP-435-1105196 88fc297c-04d4-4bbe-885c-794e65593177_wxs_gdc_realn.bam 37645362593 BAM harmonized CPTAC3 a3eb79f6-7744-45d2-b66f-8ab2c0a4a670 26392d603ca5f88c08f64f445a8a3141 {"aliquot_tag": "ALQ_5cfa9604", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C330255.DUP_cf2197af.MethArray.Green.R C330255 GBM Methylation_Array recurrent_tumor 7316UP-498 205555380064_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 f056898d-a62b-41cf-8f41-e1f747de335a 44606b8afb25eef11bd58a01f2683361 {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.DUP_cf2197af.MethArray.Red.R C330255 GBM Methylation_Array recurrent_tumor 7316UP-498 205555380064_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 ef26f124-b6ed-42f6-8513-fba0981a6ffa 3db0ae3d87767243ed30bac608b469aa {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.DUP_cf2197af.WGS.R C330255 GBM WGS recurrent_tumor 7316UP-498 7316UP-498.WholeGenome.RP-2158.bam 50663364089 BAM submitted_aligned CPTAC3 1a97001f-3f96-4ab2-bafd-7f78447b6c12 6b11c21a0d16e74fe97ddd71179977f4 {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.DUP_cf2197af.WGS.R.hg38 C330255 GBM WGS recurrent_tumor 7316UP-498 cb5aa7cc-7710-4fdd-8180-2cf07fe00743_wgs_gdc_realn.bam 152493800449 BAM harmonized CPTAC3 34ec7de0-79a0-48e5-b5f1-1665a77af068 c5ed7a9e54e74fc4e058b297bce8821c {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.DUP_cf2197af.WXS.R C330255 GBM WXS recurrent_tumor 7316UP-498 7316UP-498.WholeExome.RP-1303.bam 26484461682 BAM submitted_aligned CPTAC3 876d22c5-5f4b-4d94-809c-6dab7df175e2 458841e0faa96bc69c5c974c2184b6dc {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.DUP_cf2197af.WXS.R.hg38 C330255 GBM WXS recurrent_tumor 7316UP-498 cb5aa7cc-7710-4fdd-8180-2cf07fe00743_wxs_gdc_realn.bam 36005302764 BAM harmonized CPTAC3 b563109a-5b09-47e5-b33e-f23abc5582f9 57ce2f0c321240879802212bf3fc665a {"aliquot_tag": "DUP_cf2197af", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C330255.MethArray.Green.T C330255 GBM Methylation_Array tumor 7316UP-361 205828590014_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 64be93e0-6886-4934-8215-1862791c5289 ca3f840a220234545df0e6700047cd9c {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C330255.MethArray.Red.T C330255 GBM Methylation_Array tumor 7316UP-361 205828590014_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 b781886f-f6d3-460f-96ba-f4bd9a8ae3ab 548700e0ab84223a9b30cab09345804f {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C330255.miRNA-Seq.R.hg38 C330255 GBM miRNA-Seq recurrent_tumor 7316UP-498-1104769 11cbdb74-6fe6-4d57-b070-ec7470bed595_mirnaseq_gdc_realn.bam 79795498 BAM harmonized CPTAC3 b7949a06-9676-4f42-963a-c589cd811445 a243d0d81f66eb91727a4b731a9ef13f {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.miRNA-Seq.S5_L001_R1.R C330255 GBM miRNA-Seq recurrent_tumor 7316UP-498-1104769 210817_UNC31-K00269_0302_AHLCTHBBXY_CACCGG_S5_L001_R1_001.unaln.bam 70142423 BAM S5_L001_R1 submitted_unaligned CPTAC3 8528346e-31c6-4861-bbca-ffa7da3dceb4 4e984059155327af142c59e423bd886c {"aliquot_tag": "ALQ_1181fb13", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.RNA-Seq.chimeric.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.chimeric.gdc_realn.bam 55456025 BAM chimeric harmonized CPTAC3 7842c4ec-cfa3-4461-a175-a49490a49bb9 3de373548a51fc3c5a5dff3e425a0f35 {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.RNA-Seq.genomic.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.genomic.gdc_realn.bam 7897525386 BAM genomic harmonized CPTAC3 f8c38202-af21-4e32-8b8f-0f39f4596057 1123c3095a6c764f0df7d5db38111047 {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.RNA-Seq.S12_L003_R1.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R1_001.fastq.gz 3725717285 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 ecde968c-8d85-48f1-9b99-adf4c4f9c39c 127d378f32cb62f791b7c600c1a1d704 {"aliquot_tag": "ALQ_1181fb13", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.RNA-Seq.S12_L003_R2.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R2_001.fastq.gz 3991687450 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 7d238885-5196-4422-9eed-12e61f4703be e4d93028a0615706eb24a91adebefa20 {"aliquot_tag": "ALQ_1181fb13", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.RNA-Seq.transcriptome.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.transcriptome.gdc_realn.bam 16547318557 BAM transcriptome harmonized CPTAC3 9d8eba1e-f23a-4be4-b161-3492044fb7ef 91a95ba03572d2c12f45eeb72ef3a3d6 {"aliquot_tag": "ALQ_1181fb13", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.WGS.N C330255 GBM WGS blood_normal 7316UP-361-1105212 7316UP-361-1105212.WholeGenome.RP-2158.bam 52965115662 BAM submitted_aligned CPTAC3 9a9eccce-70b8-4e66-85ab-24ec1508dee3 a4475bc46c1d95e0ba198b380171a8c2 {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C330255.WGS.N.hg38 C330255 GBM WGS blood_normal 7316UP-361-1105212 bd2a9034-9ef8-4f68-a2e7-cde91706a385_wgs_gdc_realn.bam 159124658027 BAM harmonized CPTAC3 417d7c29-a3f8-4a79-b384-d053f4b7051f 7653112000dea1c8a144b5ac92037e25 {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C330255.WGS.R C330255 GBM WGS recurrent_tumor 7316UP-498-1105232 7316UP-498-1105232.WholeGenome.RP-2158.bam 74755089697 BAM submitted_aligned CPTAC3 b958b9b4-1eff-4e71-ad0a-4c94548031bd 3577cd298869d9ba1cc20b817d9f6929 {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.WGS.R.hg38 C330255 GBM WGS recurrent_tumor 7316UP-498-1105232 13c5f1a2-7dd1-4951-a439-0901fb185e09_wgs_gdc_realn.bam 219426984821 BAM harmonized CPTAC3 89cbb37f-6652-4958-bf54-c796ac87b1f2 5414826ef41319e279cb42b74d13b701 {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.WGS.T C330255 GBM WGS tumor 7316UP-361 7316UP-361.WholeGenome.RP-2158.bam 58000841700 BAM submitted_aligned CPTAC3 c9c95e92-ea1e-4469-b76e-fadaab18848e 95d987bc52732f9878887fe72ceb0c5c {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C330255.WGS.T.hg38 C330255 GBM WGS tumor 7316UP-361 cad8ffba-1e4f-4f8f-9378-0bd507f2444a_wgs_gdc_realn.bam 171243999389 BAM harmonized CPTAC3 e809e615-2a38-4ebb-bb20-51d162b52ce6 ff4655cd31b5daec55c1c5175ffc0ec1 {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C330255.WXS.N C330255 GBM WXS blood_normal 7316UP-361-1105212 7316UP-361-1105212.WholeExome.RP-1303.bam 25256547678 BAM submitted_aligned CPTAC3 0a15376d-7a40-4bdb-a9b1-df6a0096be32 e8fb639a3aab2e4cad717bd947e4e349 {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C330255.WXS.N.hg38 C330255 GBM WXS blood_normal 7316UP-361-1105212 bd2a9034-9ef8-4f68-a2e7-cde91706a385_wxs_gdc_realn.bam 34450311649 BAM harmonized CPTAC3 79e34d08-036d-433f-97da-111f791d1978 4d156f82e05baa2099bdc144ce2fee7f {"aliquot_tag": "ALQ_3f6e987", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C330255.WXS.R C330255 GBM WXS recurrent_tumor 7316UP-498-1105232 7316UP-498-1105232.WholeExome.RP-1303.bam 22564329011 BAM submitted_aligned CPTAC3 083f8ddc-75e5-4195-a088-65c614df023a e3fede748f5077274fc1d7a362c9041f {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C330255.WXS.R.hg38 C330255 GBM WXS recurrent_tumor 7316UP-498-1105232 13c5f1a2-7dd1-4951-a439-0901fb185e09_wxs_gdc_realn.bam 30638579982 BAM harmonized CPTAC3 b071f1a3-9555-4530-8a58-09b927aa0b31 05e88fe9c38b53e561b5554f7870d4ca {"aliquot_tag": "ALQ_45537350", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C330255.WXS.T C330255 GBM WXS tumor 7316UP-361 7316UP-361.WholeExome.RP-1303.bam 47917286279 BAM submitted_aligned CPTAC3 2dac6b52-9e5f-4b31-a1b8-aa596110be2e 9b52545903db1810d4a91d365e782e6e {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C330255.WXS.T.hg38 C330255 GBM WXS tumor 7316UP-361 cad8ffba-1e4f-4f8f-9378-0bd507f2444a_wxs_gdc_realn.bam 66332593745 BAM harmonized CPTAC3 1342f51b-95be-4e96-9d04-5ce16089b486 98c59a5ed555083d5b491c8f51a9d065 {"aliquot_tag": "ALQ_342a2541", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C383391.DUP_4db2e37f.MethArray.Green.T C383391 GBM Methylation_Array tumor 7316UP-1108 205854150030_R02C01_Grn.idat 13677903 IDAT Green NA CPTAC3 3521889e-78ca-4e4a-98e7-8c6dd724c00c bcbab84275accce45a336e3e74a66fc2 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.DUP_4db2e37f.MethArray.Red.T C383391 GBM Methylation_Array tumor 7316UP-1108 205854150030_R02C01_Red.idat 13677903 IDAT Red NA CPTAC3 b9e8aade-469f-46c6-90b2-da1f3c8b802b 21e0f82d171a142997fa16d2290d4299 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.DUP_4db2e37f.WGS.T C383391 GBM WGS tumor 7316UP-1108 7316UP-1108.WholeGenome.RP-2158.bam 53823725687 BAM submitted_aligned CPTAC3 f06a9ad7-dbaf-432e-bca3-733aa9a56f20 95186712ff2e1473fd0b89c378b46c42 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.DUP_4db2e37f.WGS.T.hg38 C383391 GBM WGS tumor 7316UP-1108 0d5862af-2f59-42b9-b6d8-5c1d84d662e9_wgs_gdc_realn.bam 161247811251 BAM harmonized CPTAC3 e8b33610-74f2-4b5b-b067-8128fe7c1d6d d8342c01d821c368d4043f6d265d75db {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.DUP_4db2e37f.WXS.T C383391 GBM WXS tumor 7316UP-1108 7316UP-1108.WholeExome.RP-1303.bam 27298437644 BAM submitted_aligned CPTAC3 48566235-21fb-426d-aca8-c2940c9ff1a4 406338888942b347473a0421bff14c2b {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.DUP_4db2e37f.WXS.T.hg38 C383391 GBM WXS tumor 7316UP-1108 0d5862af-2f59-42b9-b6d8-5c1d84d662e9_wxs_gdc_realn.bam 36902746545 BAM harmonized CPTAC3 7341902c-8501-419d-a4a6-d88859d9a8d8 3ba39e451bf89be39753b44ac5dd78a9 {"aliquot_tag": "DUP_4db2e37f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C383391.DUP_7418231a.miRNA-Seq.R.hg38 C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1581-1104800 f72cb349-3949-4734-bbf7-1635337c9418_mirnaseq_gdc_realn.bam 547134343 BAM harmonized CPTAC3 505d5214-da5f-4d92-9c1f-ef10757af546 e48f89f2ee8f65ec6d03b06f2c1bb144 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_7418231a.miRNA-Seq.S24_L002_R1.R C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1581-1104800 210817_UNC31-K00269_0302_AHLCTHBBXY_AGTCAA_S24_L002_R1_001.unaln.bam 477694077 BAM S24_L002_R1 submitted_unaligned CPTAC3 01516117-25ed-48be-8247-f7b972bc9f10 3ccc03623424745c080912bdf78c07ae {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_7418231a.RNA-Seq.chimeric.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.chimeric.gdc_realn.bam 125167966 BAM chimeric harmonized CPTAC3 4230ea7e-deca-4550-a718-9ecdd8ae6690 e2f85fe93f8c8cc1558c21a4ded5ccc9 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_7418231a.RNA-Seq.genomic.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.genomic.gdc_realn.bam 10428848178 BAM genomic harmonized CPTAC3 152f351f-be9f-4c2d-823a-aeb5fb792399 0eab7fa79449dafc1de6a137cd438aa6 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_7418231a.RNA-Seq.S15_L004_R1.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R1_001.fastq.gz 4172474327 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 02d0d950-c97c-4179-8150-9154a973d456 f6ffbdef7d1b0d9dd73086215cceabe9 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_7418231a.RNA-Seq.S15_L004_R2.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R2_001.fastq.gz 4496680542 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 1d3003c2-2047-421b-9d96-18dd27804338 fc40324bfc2e65ab2507d87ee34ae194 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_7418231a.RNA-Seq.transcriptome.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.transcriptome.gdc_realn.bam 16034224270 BAM transcriptome harmonized CPTAC3 081659c6-8e1f-4173-9841-57ecc2fb2664 25dff08435a7074c6542df368daffb74 {"aliquot_tag": "DUP_7418231a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_e70392a0.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1581-1105265 7316UP-1581-1105265.WholeGenome.RP-2158.bam 58288588843 BAM submitted_aligned CPTAC3 10a5d77e-713b-43a6-93d5-a6e26be1aa59 efd43215c8ba00aa19ee89ee2768172f {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_e70392a0.WGS.R.hg38 C383391 GBM WGS recurrent_tumor 7316UP-1581-1105265 4ca00115-595c-4479-b2fc-65fc8f019098_wgs_gdc_realn.bam 163302965467 BAM harmonized CPTAC3 6fad7247-7b54-4d01-bfc4-a7317a7e89a2 6d1d7ad0dc491a00aa8fa5b765431391 {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_e70392a0.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1581-1105265 7316UP-1581-1105265.WholeExome.RP-1303.bam 26619962510 BAM submitted_aligned CPTAC3 7904fa5e-78b1-420f-bf6a-1c2297bc7895 a6c1f69cfc343d3053d10fb67a4aadcd {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_e70392a0.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1581-1105265 4ca00115-595c-4479-b2fc-65fc8f019098_wxs_gdc_realn.bam 35998073077 BAM harmonized CPTAC3 9787a83d-885f-49df-a7b3-b9ab787174bd a07c127be80b13ed9c58d919053d2449 {"aliquot_tag": "DUP_e70392a0", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C383391.DUP_f8dd154c.MethArray.Green.R C383391 GBM Methylation_Array recurrent_tumor 7316UP-1766 205705520154_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 dc711e37-2e4a-43c1-ad79-978e25d89615 02640c824fc98eeae20683755f9f8524 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_f8dd154c.MethArray.Red.R C383391 GBM Methylation_Array recurrent_tumor 7316UP-1766 205705520154_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2ec4977d-65bf-435b-acfb-142e5a9199eb 108fd44f259fc9136975baa5e1065574 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_f8dd154c.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766 7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM submitted_aligned CPTAC3 75d29a76-a9e8-4a57-b231-22c907d64783 f91acf3d6e5fbabf998e426aaae34369 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_f8dd154c.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766 7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM submitted_aligned CPTAC3 92903bf8-833a-4614-a6ea-00fcbb929ffd f91acf3d6e5fbabf998e426aaae34369 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_f8dd154c.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1766 7316UP-1766.WholeExome.RP-1303.bam 25087107391 BAM submitted_aligned CPTAC3 f63db56a-cf7f-49d6-b7ae-e112a8716197 16a5d8357e4fba2670e3901e3eb08093 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.DUP_f8dd154c.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1766 6b0b63d6-27fe-4b00-b98f-9797af281bca_wxs_gdc_realn.bam 34195042714 BAM harmonized CPTAC3 63475f5d-5f4d-4ec8-9ba0-25c3097029c8 abfc2bf71b43fa2fd024f9c779f5bc13 {"aliquot_tag": "DUP_f8dd154c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C383391.miRNA-Seq.R.hg38 C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1766-1104799 421ed8c5-aeaa-4370-99c0-80cf131453a2_mirnaseq_gdc_realn.bam 298959459 BAM harmonized CPTAC3 9e2d6b7a-f24b-454d-a429-3f1d0ba3455c cc2bab0c22e41825ba522e1cb4d38f18 {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.miRNA-Seq.S13_L003_R1.T C383391 GBM miRNA-Seq tumor 7316UP-1108-1104809 210817_UNC31-K00269_0302_AHLCTHBBXY_CGTACG_S13_L003_R1_001.unaln.bam 233137947 BAM S13_L003_R1 submitted_unaligned CPTAC3 b1b8898e-a098-4374-b71b-ed0554a4e9b9 7ff277f5e6b519f5687b9a0f360ffed9 {"aliquot_tag": "ALQ_2691e93", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.miRNA-Seq.S28_L002_R1.R C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1766-1104799 210817_UNC31-K00269_0302_AHLCTHBBXY_CTTGTA_S28_L002_R1_001.unaln.bam 254499278 BAM S28_L002_R1 submitted_unaligned CPTAC3 05fbc1ab-b459-443c-a7db-0e45167454f8 42808419f3287876e1fbbe088b7d6766 {"aliquot_tag": "ALQ_f59e8371", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.miRNA-Seq.T.hg38 C383391 GBM miRNA-Seq tumor 7316UP-1108-1104809 a2a41043-2045-469e-96fb-c3b847f0e947_mirnaseq_gdc_realn.bam 263453620 BAM harmonized CPTAC3 5fc9a290-d656-4257-af23-7bf7de94806e 10fc80ac302e0ce288d12a1ddf8ff18d {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.RNA-Seq.chimeric.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.chimeric.gdc_realn.bam 40534685 BAM chimeric harmonized CPTAC3 bf43135f-2c23-4375-beac-54696a80190f 5d8f5a82c786b3922fa0fe82ae220635 {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.RNA-Seq.chimeric.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.chimeric.gdc_realn.bam 28904609 BAM chimeric harmonized CPTAC3 56e879f5-098d-4695-bc49-52b8b39aecc3 78dc60c9b9778829eefa31c0dc4b3a29 {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.RNA-Seq.genomic.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.genomic.gdc_realn.bam 9875883138 BAM genomic harmonized CPTAC3 b82c95dc-d7e1-4bfb-9da7-491bfd6d7151 1cd35cf267835c0a0585b261264b3b4f {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.RNA-Seq.genomic.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.genomic.gdc_realn.bam 9968773736 BAM genomic harmonized CPTAC3 1deaf9de-16fd-4555-b5c4-f32e6a712ae0 cb012cdd47038dfa5b7870bdcbc628d7 {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.RNA-Seq.S26_L007_R1.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R1_001.fastq.gz 3545435152 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 a1cdfb94-8758-4d2b-92bf-db1bac25b7e9 97b9961eb892c507cdddcce58647ee5e {"aliquot_tag": "ALQ_2691e93", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.RNA-Seq.S26_L007_R2.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R2_001.fastq.gz 3726226989 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 e25981ec-ac52-4a07-a09e-f82495748135 f5022ed351e414de6244c3b55af62566 {"aliquot_tag": "ALQ_2691e93", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.RNA-Seq.S6_L002_R1.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 3361626903 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 67f1d243-6790-4916-8e93-e9712739d6d2 6464b69d7216ae3c9c480b3d15ffe329 {"aliquot_tag": "ALQ_f59e8371", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.RNA-Seq.S6_L002_R2.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 3793927938 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 79a1e05d-5544-4bb7-8d1b-0eb7ba887f43 c885a074cf3689694ee4cc000e8e5aad {"aliquot_tag": "ALQ_f59e8371", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.RNA-Seq.transcriptome.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.transcriptome.gdc_realn.bam 10918153358 BAM transcriptome harmonized CPTAC3 9a41e91a-db60-4c09-9473-1b1ab9c80354 73ecdfd6053f5f9c40d7e64b2195edd6 {"aliquot_tag": "ALQ_f59e8371", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.RNA-Seq.transcriptome.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.transcriptome.gdc_realn.bam 15135652948 BAM transcriptome harmonized CPTAC3 7c7f83a8-638f-4f16-849c-5731f693a351 9b679a9c88471ca42194aec4bea213d6 {"aliquot_tag": "ALQ_2691e93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766-1105264 7316UP-1766-1105264.WholeGenome.RP-2158.bam 56126633437 BAM submitted_aligned CPTAC3 7894b548-1983-4d54-85b5-1641d3af56d7 c6e855af105c24ad350bddb5a272a24b {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.WGS.R.hg38 C383391 GBM WGS recurrent_tumor 7316UP-1766-1105264 9898f83f-88c5-4800-b493-492972f33ed4_wgs_gdc_realn.bam 163724138183 BAM harmonized CPTAC3 f5415289-d4cd-4a4d-943f-10e3ce3aa9fb be465c656ccbd21e673dd7468ebb0424 {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.WXS.N C383391 GBM WXS blood_normal 7316UP-1108-1105272 7316UP-1108-1105272.WholeExome.RP-1303.bam 24745797287 BAM submitted_aligned CPTAC3 c0487dd4-37f2-4c32-93b6-0d0de66c547a afbd0aeb14c30296d4c6493f14e4b2fb {"aliquot_tag": "ALQ_6fd1b36f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C383391.WXS.N.hg38 C383391 GBM WXS blood_normal 7316UP-1108-1105272 64ed74c9-b20e-45aa-85c1-760c4f44451f_wxs_gdc_realn.bam 33659971750 BAM harmonized CPTAC3 5ddee6c2-988a-4b6a-9594-ffc03d9da680 e9d22f28667ef836ab8facfcd18ca399 {"aliquot_tag": "ALQ_6fd1b36f", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C383391.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1766-1105264 7316UP-1766-1105264.WholeExome.RP-1303.bam 29360557443 BAM submitted_aligned CPTAC3 6dab5b5b-d531-4577-99ae-34db7950f86f 81c59fcd899e2ee779778160b3afc61d {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C383391.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1766-1105264 9898f83f-88c5-4800-b493-492972f33ed4_wxs_gdc_realn.bam 39967648544 BAM harmonized CPTAC3 b621007c-7a1b-48ee-b428-7fb6164b3cec 306a7e09a3dc526b8ce96178fa137f24 {"aliquot_tag": "ALQ_b2c0468d", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C383391.WXS.T C383391 GBM WXS tumor 7316UP-1108-1105202 7316UP-1108-1105202.WholeExome.RP-1303.bam 27655982134 BAM submitted_aligned CPTAC3 49c281c9-1066-4546-828f-5e20879f0238 88fc1d8a859c9730a8b85e90465104d3 {"aliquot_tag": "ALQ_209025a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C383391.WXS.T.hg38 C383391 GBM WXS tumor 7316UP-1108-1105202 f7d2db47-e553-4569-b883-51d139f98ef5_wxs_gdc_realn.bam 37962672248 BAM harmonized CPTAC3 cff641f8-776b-4b10-8983-71008ed827f4 7e0c404c1e50d0ab862ab9e6e3cc518a {"aliquot_tag": "ALQ_209025a8", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-00001.MethArray.Green.A C3L-00001 LUAD Methylation_Array tissue_normal CPT0001590008 203027390118_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 df1ce98e-8ee2-4c56-beb4-0129824b2033 0641f2a152b850b53b2c7cc5dcf34425 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.MethArray.Green.T C3L-00001 LUAD Methylation_Array tumor CPT0001580165 201557560005_R01C01_Grn.idat 13676234 IDAT Green NA CPTAC3 c41ca2cf-b388-443c-9ca6-b51e9db97b45 739e69d1e358d4bdb485a2e1c8cbc531 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.MethArray.Red.A C3L-00001 LUAD Methylation_Array tissue_normal CPT0001590008 203027390118_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 b5971ca7-ad14-4c3a-9b33-eee83bd40ae3 9e53192a72676c77abb15cd0a508dfbc {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.MethArray.Red.T C3L-00001 LUAD Methylation_Array tumor CPT0001580165 201557560005_R01C01_Red.idat 13676234 IDAT Red NA CPTAC3 68f5b973-91b0-4262-8c51-b89917e3a6cd fe8b80f50ead938d36e2661c60cbb5a3 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.miRNA-Seq.A.hg38 C3L-00001 LUAD miRNA-Seq tissue_normal CPT0001590005 1f970bbc-0c72-4494-a07c-6614fee73147_mirnaseq_gdc_realn.bam 272125302 BAM harmonized CPTAC3 9e0ff60b-1065-44b7-9a81-f76610b1b320 53251eac83c8e042719ecd49c2bfbe58 {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.miRNA-Seq.S40_L002_R1.T C3L-00001 LUAD miRNA-Seq tumor CPT0001580164 181113_UNC31-K00269_0164_AH23NNBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 198156013 BAM S40_L002_R1 submitted_unaligned CPTAC3 7f8959ca-2250-4099-bed2-b85fb4b1fbd2 4eb52417fd4533fe85a5c07c2dcac03d {"aliquot_tag": "ALQ_8ef887a3", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.miRNA-Seq.S46_L002_R1.A C3L-00001 LUAD miRNA-Seq tissue_normal CPT0001590005 181108_UNC31-K00269_0163_BH23TVBBXY_TCCCGA_S46_L002_R1_001.unaln.bam 238885562 BAM S46_L002_R1 submitted_unaligned CPTAC3 18d260e2-519b-4e6d-b640-7205239ee964 c206ca7bed33f36b085c6d6fbe4a123b {"aliquot_tag": "ALQ_93075334", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.miRNA-Seq.T.hg38 C3L-00001 LUAD miRNA-Seq tumor CPT0001580164 5c89811b-9851-41e7-a0c2-a0e5e3090a54_mirnaseq_gdc_realn.bam 216661805 BAM harmonized CPTAC3 61ec239b-7461-44fb-bdb5-24bfe37dc7bd cca923dc83d2bc6598802a48fa22ca63 {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.RNA-Seq.chimeric.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.chimeric.gdc_realn.bam 63975785 BAM chimeric harmonized CPTAC3 85013de0-5d4c-40b2-b83d-611fa037ee0a e1af18c3bb4aae36040a8e1fc30c81d2 {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.RNA-Seq.chimeric.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.chimeric.gdc_realn.bam 70180049 BAM chimeric harmonized CPTAC3 7bebe96f-ec5a-4e67-8d0c-9e251ad9c68b 7c924fa5ec507286d56bc32a9d9d4ae2 {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.RNA-Seq.genomic.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.genomic.gdc_realn.bam 6565001896 BAM genomic harmonized CPTAC3 3776ea90-7e8f-4531-886f-d91fd56407a7 42265ab0abc521564a0f3165f6b1707e {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.RNA-Seq.genomic.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.genomic.gdc_realn.bam 7865654140 BAM genomic harmonized CPTAC3 bb209fc6-e49c-4dbf-aafd-935fae61ac6f 1579e9b7951d18a0b838ddd28765d47e {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.RNA-Seq.S12_L004_R1.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R1_001.fastq.gz 3170333423 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 6f1bf159-5c80-41dc-87c4-593ace9987d6 a4fe58f08f8c0e386d20ef46ffc21158 {"aliquot_tag": "ALQ_93075334", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.RNA-Seq.S12_L004_R2.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R2_001.fastq.gz 3377969387 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 a1647619-4448-4ea8-aa7e-6968fd2f61ad 33b752dd8aee17f45a4d3d22681e88ba {"aliquot_tag": "ALQ_93075334", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.RNA-Seq.S4_L006_R1.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 3467940463 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 8db05676-b96a-466a-bdbc-71db64e64c08 e603da80da9520f6f8f301fc50a344a3 {"aliquot_tag": "ALQ_8ef887a3", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.RNA-Seq.S4_L006_R2.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 3786676689 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 593e3888-d805-403e-813d-c10c9a34d539 015da0c7e5c477ca695055587c288e62 {"aliquot_tag": "ALQ_8ef887a3", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.RNA-Seq.transcriptome.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.transcriptome.gdc_realn.bam 7891830831 BAM transcriptome harmonized CPTAC3 2253f085-844e-4512-ad3a-190f020bb6fd 9c12d7b15f0fa790224238a87cafba24 {"aliquot_tag": "ALQ_93075334", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.RNA-Seq.transcriptome.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.transcriptome.gdc_realn.bam 8019945759 BAM transcriptome harmonized CPTAC3 28435e4b-f1a9-4668-ad9d-48247105f822 0adcce03060eadacfe861cf76a348a81 {"aliquot_tag": "ALQ_8ef887a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.WGS.A C3L-00001 LUAD WGS tissue_normal CPT0001590008 CPT0001590008.WholeGenome.RP-1303.bam 59764413161 BAM submitted_aligned CPTAC3 34d01163-72b1-4008-8bd7-33380906edff a66d553a599cd431ec3b6108fd4d8464 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.WGS.A.hg38 C3L-00001 LUAD WGS tissue_normal CPT0001590008 51f174e6-1be7-4819-9339-b95193c935bd_wgs_gdc_realn.bam 86803129008 BAM harmonized CPTAC3 7f516c95-70be-4add-9af9-19d6428edd44 5ae2b5f7db2e0ce311cdd5020c3d2d66 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00001.WGS.N C3L-00001 LUAD WGS blood_normal CPT0000150163 CPT0000150163.WholeGenome.RP-1303.bam 138602354329 BAM submitted_aligned CPTAC3 caa607a4-b0c5-4b5d-ba51-1e648a8e264a 42997e95d6df30d25c082c29e826cf6f {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00001.WGS.N.hg38 C3L-00001 LUAD WGS blood_normal CPT0000150163 2595f8ca-ef17-4bf0-984d-27caaa8ee608_gdc_realn.bam 202924825766 BAM harmonized CPTAC3 1d301dc5-ebb2-47e0-9a9f-e31ed41b4542 ad13fed3116916005024c89f12992913 {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00001.WGS.T C3L-00001 LUAD WGS tumor CPT0001580165 CPT0001580165.WholeGenome.RP-1303.bam 138347401746 BAM submitted_aligned CPTAC3 800c4053-2b67-4e66-bb97-474458635c21 20de25c08f2eb037f22fa2ad7379f58f {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.WGS.T.hg38 C3L-00001 LUAD WGS tumor CPT0001580165 1cc7a20f-b05e-4661-95ec-399b3080a02b_gdc_realn.bam 200258660209 BAM harmonized CPTAC3 b919a0f4-c85d-4fe0-9947-2b8cb9b9a2b4 8bfbc3d69159ab8efe370237b5610e85 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.WXS.A C3L-00001 LUAD WXS tissue_normal CPT0001590008 CPT0001590008.WholeExome.RP-1303.bam 40403928360 BAM submitted_aligned CPTAC3 6b61189d-0f3a-4b51-b988-1f063d107114 07a06c00b92ac282699591656789cf4f {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00001.WXS.A.hg38 C3L-00001 LUAD WXS tissue_normal CPT0001590008 51f174e6-1be7-4819-9339-b95193c935bd_wxs_gdc_realn.bam 55218252573 BAM harmonized CPTAC3 a4163684-cf9c-466f-ac3f-5a591ce9e9b9 d2634c52fb298bc6f92644c6f5008391 {"aliquot_tag": "ALQ_edb62f89", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00001.WXS.N C3L-00001 LUAD WXS blood_normal CPT0000150163 CPT0000150163.WholeExome.RP-1303.bam 27988092058 BAM submitted_aligned CPTAC3 f6a3f2f8-657d-48b3-9762-1ec60c50bd93 02b1b0ebbdc2e30306646ac254dc313c {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00001.WXS.N.hg38 C3L-00001 LUAD WXS blood_normal CPT0000150163 2595f8ca-ef17-4bf0-984d-27caaa8ee608_gdc_realn.bam 39542030390 BAM harmonized CPTAC3 df589c6d-37e7-4878-9453-ded1a3ca5e17 9fc32e83356b9db8f1ec0cbf202d7891 {"aliquot_tag": "ALQ_d5ea9f13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00001.WXS.T C3L-00001 LUAD WXS tumor CPT0001580165 CPT0001580165.WholeExome.RP-1303.bam 31774252273 BAM submitted_aligned CPTAC3 9048a65c-2312-4cae-bea6-d31a1c53bd39 b763a7bfde97cd1bb53673a2cd48452e {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00001.WXS.T.hg38 C3L-00001 LUAD WXS tumor CPT0001580165 1cc7a20f-b05e-4661-95ec-399b3080a02b_gdc_realn.bam 43659332939 BAM harmonized CPTAC3 a0e38199-402a-4ae1-b00d-ec9c67dd51df 537a4ba9f2f23ebb270e63d696ca6819 {"aliquot_tag": "ALQ_f9ffb735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.MethArray.Green.A C3L-00004 CCRCC Methylation_Array tissue_normal CPT0001550013 204930630113_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e5e09660-66b1-40f5-ba1f-110d1e5cb8a9 2c089f69fa120f37bb732a572bfe31fe {"aliquot_tag": "ALQ_a68f2a41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.MethArray.Green.T C3L-00004 CCRCC Methylation_Array tumor CPT0001540165 201557560049_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fbbafc2d-6792-4fae-bc55-819a05c6ad2a 5d5aca53a23c54b112dff078b399de9c {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.MethArray.Red.A C3L-00004 CCRCC Methylation_Array tissue_normal CPT0001550013 204930630113_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 65d4ab9d-8975-4cc2-9376-e9d8ba6fa335 f7b77e9a754e9b1b158019342c199dc6 {"aliquot_tag": "ALQ_a68f2a41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.MethArray.Red.T C3L-00004 CCRCC Methylation_Array tumor CPT0001540165 201557560049_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 6a0992ca-3d2a-4d1a-9368-74b56cfefbda 3d1e9062b0996fb803f76d776abfb9b6 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.miRNA-Seq.A.hg38 C3L-00004 CCRCC miRNA-Seq tissue_normal CPT0001550006 29c227bb-50a4-4d50-8d6f-52bc55219883_mirnaseq_gdc_realn.bam 219223793 BAM harmonized CPTAC3 1822ab71-6bca-4e5b-b55c-525ed7a78478 6647fd4f5d7d91d52153547ce3215b2b {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.miRNA-Seq.S13_L001_R1.T C3L-00004 CCRCC miRNA-Seq tumor CPT0001540164 181113_UNC31-K00269_0164_AH23NNBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 180028660 BAM S13_L001_R1 submitted_unaligned CPTAC3 e80a22fb-6a97-4163-ae09-a275db4464ec c0037661a69dc42a226a4b8acda6a223 {"aliquot_tag": "ALQ_4b086aa2", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.miRNA-Seq.S22_L005_R1.A C3L-00004 CCRCC miRNA-Seq tissue_normal CPT0001550006 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L005_R1_001.unaln.bam 194613679 BAM S22_L005_R1 submitted_unaligned CPTAC3 7bf6be8f-c202-4f7a-b9e6-556153052645 d1805347b4faaf2b87d8332846d3e341 {"aliquot_tag": "ALQ_cffeef8f", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.miRNA-Seq.T.hg38 C3L-00004 CCRCC miRNA-Seq tumor CPT0001540164 02fc9aea-63e7-4918-b494-82ab3ac41599_mirnaseq_gdc_realn.bam 196798551 BAM harmonized CPTAC3 f4df9261-f178-417c-a95c-b08ed5d5d965 a476b35219ca786fe90d17ad67fa407d {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.RNA-Seq.chimeric.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.chimeric.gdc_realn.bam 68660391 BAM chimeric harmonized CPTAC3 01b90b29-15d2-482d-8a27-fc3f70432df6 b28a1f8ea44450b0c72fe1f24a357d48 {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.RNA-Seq.chimeric.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.chimeric.gdc_realn.bam 91352854 BAM chimeric harmonized CPTAC3 7154c769-3d34-42b8-857b-5d14bd8ea2b2 e5801a02e63c454e88fd4362dde092df {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.RNA-Seq.genomic.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.genomic.gdc_realn.bam 8198531197 BAM genomic harmonized CPTAC3 6a829605-540c-4742-a7a5-b270dc137c45 4ed88ed7191ba9f8e14c801c71904ec2 {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.RNA-Seq.genomic.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.genomic.gdc_realn.bam 8003736717 BAM genomic harmonized CPTAC3 d4c152be-e48a-40b9-8b2d-afc1f4e7ca6d b58b740e672ce92e0e26896ed02d3944 {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.RNA-Seq.S14_L004_R1.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R1_001.fastq.gz 3583768830 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 287dfdf2-9db1-4216-bffb-1b0a91d91a18 938ee1cce13b5fb162d745e2728b4a76 {"aliquot_tag": "ALQ_4b086aa2", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.RNA-Seq.S14_L004_R2.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R2_001.fastq.gz 4011873670 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 b9e72d51-f52d-43b0-99fa-25c184f27a92 82f5aca80e5debf65d53c3ff985cfa2b {"aliquot_tag": "ALQ_4b086aa2", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.RNA-Seq.S57_L008_R1.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R1_001.fastq.gz 3956827023 FASTQ S57_L008_R1 submitted_unaligned CPTAC3 804bc1fd-f191-4415-985f-7572e367ccbb b645b63047f98ea399ccc89e945ffdb4 {"aliquot_tag": "ALQ_cffeef8f", "sample": "S57", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.RNA-Seq.S57_L008_R2.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R2_001.fastq.gz 4122366105 FASTQ S57_L008_R2 submitted_unaligned CPTAC3 eb0369b6-5af2-4066-a2b3-41f4d4a93719 4c3078869f5081425ce645dc23dcaeea {"aliquot_tag": "ALQ_cffeef8f", "sample": "S57", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.RNA-Seq.transcriptome.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.transcriptome.gdc_realn.bam 10571004205 BAM transcriptome harmonized CPTAC3 edd40709-83f2-40ff-a8d5-d5731f062785 97123e89ecc8f647e09f9da38a31af53 {"aliquot_tag": "ALQ_cffeef8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.RNA-Seq.transcriptome.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.transcriptome.gdc_realn.bam 10413867184 BAM transcriptome harmonized CPTAC3 7057ea6a-7aa4-4472-baad-215642ad7fc1 1bfcab8bb976d6aac1ca0df1a35dc7b2 {"aliquot_tag": "ALQ_4b086aa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.WGS.A C3L-00004 CCRCC WGS tissue_normal CPT0001550009 CPT0001550009.WholeGenome.RP-1303.bam 63270315022 BAM submitted_aligned CPTAC3 376bb37b-520f-4ac4-a035-1fdeb489fc4e ed48599f4986741b3bd1d47a7f003860 {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.WGS.A.hg38 C3L-00004 CCRCC WGS tissue_normal CPT0001550009 63327ba1-ba31-4984-81a3-725c0d7b2086_wgs_gdc_realn.bam 92499493937 BAM harmonized CPTAC3 fcb42e8c-30bc-48be-9a18-cfbf2af35e0a 7ade6a1855d98e7739d856f2b229ef26 {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.WGS.N C3L-00004 CCRCC WGS blood_normal CPT0000140163 CPT0000140163.WholeGenome.RP-1303.bam 137026519152 BAM submitted_aligned CPTAC3 59f284e7-cffa-4891-a76c-60dd8e46a01d c4f2f69bffed177e9412ba8559a37ecf {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00004.WGS.N.hg38 C3L-00004 CCRCC WGS blood_normal CPT0000140163 1561b97d-8c8f-4fe6-a244-06452760074d_gdc_realn.bam 200595183585 BAM harmonized CPTAC3 22a34772-76b0-4cab-af6f-43472bb74199 2e364cc284781a02c3edabbc75ca210e {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00004.WGS.T C3L-00004 CCRCC WGS tumor CPT0001540165 CPT0001540165.WholeGenome.RP-1303.bam 146090178289 BAM submitted_aligned CPTAC3 c336c120-966a-4ec0-9fc7-6d5c856bbc22 12e1fcaf3dd836872c2f665d08b37423 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.WGS.T.hg38 C3L-00004 CCRCC WGS tumor CPT0001540165 82ccdf4e-4527-47ca-8151-7e1248f1da09_gdc_realn.bam 212972511913 BAM harmonized CPTAC3 d3c54309-50b1-4257-8e90-4536dd45efe1 05dd981dd2007ec5b2620381f87205a2 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.WXS.A C3L-00004 CCRCC WXS tissue_normal CPT0001550009 CPT0001550009.WholeExome.RP-1303.bam 41922704371 BAM submitted_aligned CPTAC3 deef0198-312b-4c21-bff0-d761ca79fb71 c27d4b4eb957b298b3bcebeb9b3ab5be {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.WXS.A.hg38 C3L-00004 CCRCC WXS tissue_normal CPT0001550009 63327ba1-ba31-4984-81a3-725c0d7b2086_wxs_gdc_realn.bam 56631971986 BAM harmonized CPTAC3 40f1ab1f-5740-432a-94b2-ea466ec797e3 0a3631d858cfc95b3b11f6d63d4a45a1 {"aliquot_tag": "ALQ_5f41f21e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00004.WXS.N C3L-00004 CCRCC WXS blood_normal CPT0000140163 CPT0000140163.WholeExome.RP-1303.bam 29198662220 BAM submitted_aligned CPTAC3 e933d585-96d2-4ab6-89b1-2b542d07fa9e 4501fc3aeaa7c9b7533dcf9d8c9970ec {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00004.WXS.N.hg38 C3L-00004 CCRCC WXS blood_normal CPT0000140163 1561b97d-8c8f-4fe6-a244-06452760074d_gdc_realn.bam 40586776249 BAM harmonized CPTAC3 1dee4e84-b617-43a2-add1-c68c5e36bcec eac1811599dfed7cfe4f5abeb893cb66 {"aliquot_tag": "ALQ_e88ab6a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00004.WXS.T C3L-00004 CCRCC WXS tumor CPT0001540165 CPT0001540165.WholeExome.RP-1303.bam 39445446486 BAM submitted_aligned CPTAC3 baaf9523-3d3c-4c8a-979c-af8b86a1bc6d 98014f0fd20d3fffe8d13d46a275c4e9 {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00004.WXS.T.hg38 C3L-00004 CCRCC WXS tumor CPT0001540165 82ccdf4e-4527-47ca-8151-7e1248f1da09_gdc_realn.bam 53186219044 BAM harmonized CPTAC3 524d1cea-62cd-483c-8137-19450faf72b6 dbe4a9f30bfc2a0efe8ef710d074230c {"aliquot_tag": "ALQ_3c0f5a34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.MethArray.Green.T C3L-00006 UCEC Methylation_Array tumor CPT0001460007 201557540007_R08C01_Grn.idat 13676222 IDAT Green NA CPTAC3 1d7cb5a9-7648-437c-9b6c-12dfca48ca12 d40abf9cd21a7a110f23edd4afd67edd {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.MethArray.Red.T C3L-00006 UCEC Methylation_Array tumor CPT0001460007 201557540007_R08C01_Red.idat 13676222 IDAT Red NA CPTAC3 31d10d0d-1dcc-4897-a879-b4510b5ebd38 8b8fc66a49e50295807b36a685687bad {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.miRNA-Seq.A.hg38 C3L-00006 UCEC miRNA-Seq tissue_normal CPT0001470006 0978a8f5-c49c-44f0-a311-d4f89acd522e_mirnaseq_gdc_realn.bam 281830092 BAM harmonized CPTAC3 9bda888e-b50e-43c7-8961-2fbff09d71e8 ff41b26dae21aad4557f6f14a62282c3 {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.miRNA-Seq.S16_L006_R1.A C3L-00006 UCEC miRNA-Seq tissue_normal CPT0001470006 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L006_R1_001.unaln.bam 246964533 BAM S16_L006_R1 submitted_unaligned CPTAC3 837d8832-73b6-4fa3-99c8-f8d4d7a5a3c2 b9f889d11c718b4bb4307523eafaaa9e {"aliquot_tag": "ALQ_7e626f4a", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.miRNA-Seq.S39_L002_R1.T C3L-00006 UCEC miRNA-Seq tumor CPT0001460164 181113_UNC31-K00269_0164_AH23NNBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 186578806 BAM S39_L002_R1 submitted_unaligned CPTAC3 d0acbabd-f97d-4d5c-adec-b539edded0de 643223c47a7d53f453a0f59aa97470af {"aliquot_tag": "ALQ_fa94ea67", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.miRNA-Seq.T.hg38 C3L-00006 UCEC miRNA-Seq tumor CPT0001460164 fe67dd2b-fd0a-4918-b7f3-ebf2f10f6063_mirnaseq_gdc_realn.bam 202747726 BAM harmonized CPTAC3 67c467d3-fe50-4e94-aa91-4b4439224362 5d0c0966bb46ffa66b03aaf6e5730dbb {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.chimeric.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.chimeric.gdc_realn.bam 152631450 BAM chimeric harmonized CPTAC3 8c2f844a-76b3-4905-becd-e89798735152 d94abf26d37b1347a7268509f8a65fc2 {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.RNA-Seq.chimeric.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.chimeric.gdc_realn.bam 131557006 BAM chimeric harmonized CPTAC3 6f0b7990-0d6b-4e71-b033-51c7ae0e222c 8fbfb865f508c1a950cae4c95f02e799 {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.chimeric.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.chimeric.gdc_realn.bam 166551731 BAM chimeric harmonized CPTAC3 2da30e2a-eb43-4dfd-9e10-98100fcdc954 37522f6bccf6cd159e45a8b9928516d9 {"aliquot_tag": "ALQ_732bb609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.genomic.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.genomic.gdc_realn.bam 7664521391 BAM genomic harmonized CPTAC3 a60f01e3-f87e-4fb1-af2d-be6f707a1583 16f7371ba893134ffa891c5f47a7f1cf {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.RNA-Seq.genomic.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.genomic.gdc_realn.bam 7863180104 BAM genomic harmonized CPTAC3 32b121fd-d4b3-4a4d-85c8-8070f950314d e42687975b40fee286dc7666de7734f6 {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.genomic.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.genomic.gdc_realn.bam 8961910969 BAM genomic harmonized CPTAC3 0c60f4e6-2c87-4578-b073-886f8e7d6f28 26059fbea54352c8affe719d06b9f843 {"aliquot_tag": "ALQ_732bb609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.S17_L005_R1.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R1_001.fastq.gz 3875867464 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 8a1efc47-1c29-417f-a425-cdbd09565dcb 220251611f5168663d5273deffa65203 {"aliquot_tag": "ALQ_fa94ea67", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.S17_L005_R2.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R2_001.fastq.gz 4295485553 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 8c3fe9b7-7acd-4867-8d9c-a8e5d1516eda e651d3e28763687d67f1427d288681d1 {"aliquot_tag": "ALQ_fa94ea67", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.S39_L007_R1.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R1_001.fastq.gz 3462455668 FASTQ S39_L007_R1 submitted_unaligned CPTAC3 caea5e0c-f3be-4db4-8837-c3f5d89ac4a6 550f9dad913fb3cd970519800eb930d0 {"aliquot_tag": "ALQ_7e626f4a", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.RNA-Seq.S39_L007_R2.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R2_001.fastq.gz 3728425524 FASTQ S39_L007_R2 submitted_unaligned CPTAC3 d5b2b761-e82a-4829-8aab-a78d87cde2a1 c1a3c67d59e19c0875b3d75400dd8b61 {"aliquot_tag": "ALQ_7e626f4a", "sample": "S39", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.RNA-Seq.S65_R1.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R1_001.fastq.gz 5552900008 FASTQ S65_R1 submitted_unaligned CPTAC3 cdee2b7c-feac-42d4-9138-3f79952769ea 6233ac946dc6a8cb34fb65b817f41489 {"aliquot_tag": "ALQ_732bb609", "sample": "S65", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.S65_R2.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R2_001.fastq.gz 5759284017 FASTQ S65_R2 submitted_unaligned CPTAC3 66f24dcc-d4fc-482a-bef2-8252fc3537ca a6520e0879b241ef6e06f85b52cfba52 {"aliquot_tag": "ALQ_732bb609", "sample": "S65", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.transcriptome.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.transcriptome.gdc_realn.bam 8054263551 BAM transcriptome harmonized CPTAC3 1bf96578-4352-48ca-b131-c77f4095744a 988984a1394d31e9fe747e30884d84d3 {"aliquot_tag": "ALQ_7e626f4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.RNA-Seq.transcriptome.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.transcriptome.gdc_realn.bam 11243039828 BAM transcriptome harmonized CPTAC3 a522211c-1a38-477a-a725-e6b1bfa39e9f cef80bad497b0393e7b05e8fb6429f8a {"aliquot_tag": "ALQ_fa94ea67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.RNA-Seq.transcriptome.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.transcriptome.gdc_realn.bam 5602032600 BAM transcriptome harmonized CPTAC3 239b6173-9be4-4d4a-aaa7-f61d4b25759e 714c6523c1a163b9a20d149226532f79 {"aliquot_tag": "ALQ_732bb609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.WGS.A C3L-00006 UCEC WGS tissue_normal CPT0001470009 CPT0001470009.WholeGenome.RP-1303.bam 60673545385 BAM submitted_aligned CPTAC3 79bc45b0-4936-49db-b54d-462280db83e2 9d2bb378f89f0d21859762f7d6f8fb16 {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.WGS.A.hg38 C3L-00006 UCEC WGS tissue_normal CPT0001470009 cb385c27-1157-4877-b1ff-a06076715303_wgs_gdc_realn.bam 88996659007 BAM harmonized CPTAC3 8c74f9dc-e295-4db2-bc29-c25e896d7947 4bf38f3505d1860bdd14a20ad4baadef {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.WGS.N C3L-00006 UCEC WGS blood_normal CPT0000120163 CPT0000120163.WholeGenome.RP-1303.bam 151985198519 BAM submitted_aligned CPTAC3 14c0cb14-71e4-4f26-89f1-349ce26f0bf9 fe6d49f2c01725954df1fe15016c214a {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00006.WGS.N.hg38 C3L-00006 UCEC WGS blood_normal CPT0000120163 92b5e534-6cb0-43eb-8147-ce7d18526f5e_gdc_realn.bam 220869345161 BAM harmonized CPTAC3 9f29ebe1-de5d-47a8-a54d-d1e8441409c6 33700ef12c40c7a58d4703043fcb0669 {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00006.WGS.T C3L-00006 UCEC WGS tumor CPT0001460007 CPT0001460007.WholeGenome.RP-1303.bam 172574887163 BAM submitted_aligned CPTAC3 d7d6b810-7183-4cd3-8847-8794ec578fb9 8afb6a100ad07d5d8f6a53e13d16a919 {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.WGS.T.hg38 C3L-00006 UCEC WGS tumor CPT0001460007 d9975c5f-288d-417d-bdb3-f490d9a36401_gdc_realn.bam 252294227835 BAM harmonized CPTAC3 457f2c4d-ddf3-416e-bb50-b112eede02d5 5e2d7c20539c37862e35bc5504fc0741 {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.WXS.A C3L-00006 UCEC WXS tissue_normal CPT0001470009 CPT0001470009.WholeExome.RP-1303.bam 31416159484 BAM submitted_aligned CPTAC3 21602f93-05c5-4640-9180-f06adf97a7db 6f3a4f83de7626b9b54c37231e3b7a9b {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.WXS.A.hg38 C3L-00006 UCEC WXS tissue_normal CPT0001470009 cb385c27-1157-4877-b1ff-a06076715303_wxs_gdc_realn.bam 43851360793 BAM harmonized CPTAC3 8413d264-73bd-4c8a-a88e-5fe9869fe9ea 343ebab28bdfea6ddc645057c6975a37 {"aliquot_tag": "ALQ_eedd72db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00006.WXS.N C3L-00006 UCEC WXS blood_normal CPT0000120163 CPT0000120163.WholeExome.RP-1303.bam 34319355475 BAM submitted_aligned CPTAC3 cc3a2843-4c09-4270-a0be-62a0dfccce7f 6db1db1d9fa6cf47b9f89d86a2877015 {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00006.WXS.N.hg38 C3L-00006 UCEC WXS blood_normal CPT0000120163 92b5e534-6cb0-43eb-8147-ce7d18526f5e_gdc_realn.bam 47718784405 BAM harmonized CPTAC3 53dbb4d6-ce9d-4145-a33a-0c4d67e655df 1d7f719218ce0fb588d9a70e3d82a091 {"aliquot_tag": "ALQ_67ca4303", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00006.WXS.T C3L-00006 UCEC WXS tumor CPT0001460007 CPT0001460007.WholeExome.RP-1303.bam 33843236954 BAM submitted_aligned CPTAC3 b821093d-2551-4327-96d5-07bc91c6d8aa 2ff4d23084057ef0a6aadedaf00e9bea {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00006.WXS.T.hg38 C3L-00006 UCEC WXS tumor CPT0001460007 d9975c5f-288d-417d-bdb3-f490d9a36401_gdc_realn.bam 46442577649 BAM harmonized CPTAC3 96c07fe5-d530-4c9b-92ce-49408feacb2c 6e3985e72d7457a439eb722ab72e5d42 {"aliquot_tag": "ALQ_3405766c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.MethArray.Green.T C3L-00008 UCEC Methylation_Array tumor CPT0001300005 201557560049_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3b08c3db-8efb-4abe-a709-ab3195b5977f 0f184f200eb2844e0773317d23ebf783 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.MethArray.Red.T C3L-00008 UCEC Methylation_Array tumor CPT0001300005 201557560049_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 b37d8198-f27a-4562-a968-74df268a53c8 5f21a7c05a2b894500b9e506c20cab0d {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.miRNA-Seq.S7_L001_R1.T C3L-00008 UCEC miRNA-Seq tumor CPT0001300164 181113_UNC31-K00269_0164_AH23NNBBXY_CACGAT_S7_L001_R1_001.unaln.bam 229697943 BAM S7_L001_R1 submitted_unaligned CPTAC3 6cbb3340-95dc-4d9d-8fd1-275534f4750f 454ede5d467756fb7508e10f3550ef8d {"aliquot_tag": "ALQ_68d12f7f", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.miRNA-Seq.T.hg38 C3L-00008 UCEC miRNA-Seq tumor CPT0001300164 5ae6dc75-0ab0-4f22-bfde-8bdfcd09fe6c_mirnaseq_gdc_realn.bam 252462534 BAM harmonized CPTAC3 07c7f8c4-85be-4fde-b51b-5dea44a9204a 7fe1ec4b4e079f99fb0fdf50ea64d0da {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.RNA-Seq.chimeric.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.chimeric.gdc_realn.bam 91709053 BAM chimeric harmonized CPTAC3 1cfa6fb9-2c16-4cbb-8876-d4b3c383d4d1 b3bbaf1f96c1a955632bbc86853eedf6 {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.RNA-Seq.genomic.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.genomic.gdc_realn.bam 8027989531 BAM genomic harmonized CPTAC3 00f51241-f59f-471f-a3e9-a833ec21ecd6 b667aaf9b59d2f5eeb2782f11d07f98f {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.RNA-Seq.S22_L007_R1.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R1_001.fastq.gz 3737217002 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 555725e8-cba5-4676-9b0a-80100cbf9f47 05fe45687d115a7f053b31ece92174db {"aliquot_tag": "ALQ_68d12f7f", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.RNA-Seq.S22_L007_R2.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R2_001.fastq.gz 4246440834 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 15235b12-b67a-4678-acc4-ed03d642bd5e c582fc995be2c3e9b3b93c65b025e917 {"aliquot_tag": "ALQ_68d12f7f", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.RNA-Seq.transcriptome.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.transcriptome.gdc_realn.bam 12876827464 BAM transcriptome harmonized CPTAC3 b385f3d1-700b-4f49-887f-79f651fc3662 8a2e755af8a7d0f99a7c35ac910e4c56 {"aliquot_tag": "ALQ_68d12f7f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.WGS.N C3L-00008 UCEC WGS blood_normal CPT0000080163 CPT0000080163.WholeGenome.RP-1303.bam 140546547792 BAM submitted_aligned CPTAC3 65f1564f-5dd7-4fc5-ae7c-8522602435d9 c71568df169ce9daf86c6f148bfc9352 {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00008.WGS.N.hg38 C3L-00008 UCEC WGS blood_normal CPT0000080163 243bfb3c-d06b-4de5-a6c3-7fa7e2c5fb74_gdc_realn.bam 204714582211 BAM harmonized CPTAC3 846bf455-89b4-4840-b113-e529ffa13277 1df7341fbedeaec7cfd70438deb6107f {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00008.WGS.T C3L-00008 UCEC WGS tumor CPT0001300005 CPT0001300005.WholeGenome.RP-1303.bam 137189802725 BAM submitted_aligned CPTAC3 bcdaf5a3-d765-47d5-9ff5-fcaf48ebbfd1 26ada53c0c32ae4845ed63e7e1fde360 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.WGS.T.hg38 C3L-00008 UCEC WGS tumor CPT0001300005 f6924a26-a14f-45a3-b4bd-7a4592d34065_gdc_realn.bam 200107040765 BAM harmonized CPTAC3 1c0e0f84-4caf-4493-9b2f-8f5f9ef9231b ce34785301652aed694c42c38de87978 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.WXS.N C3L-00008 UCEC WXS blood_normal CPT0000080163 CPT0000080163.WholeExome.RP-1303.bam 28304294001 BAM submitted_aligned CPTAC3 185b6084-2a62-4469-8aa2-86a4e8601300 b25e096fd14c31312d15448370949afe {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00008.WXS.N.hg38 C3L-00008 UCEC WXS blood_normal CPT0000080163 243bfb3c-d06b-4de5-a6c3-7fa7e2c5fb74_gdc_realn.bam 39779821401 BAM harmonized CPTAC3 90257622-6bcc-43e7-a04f-f7397975d038 1961e136cd00d32b1554f5094a025513 {"aliquot_tag": "ALQ_e6268807", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00008.WXS.T C3L-00008 UCEC WXS tumor CPT0001300005 CPT0001300005.WholeExome.RP-1303.bam 29714332638 BAM submitted_aligned CPTAC3 d38806cb-be68-4219-ac60-2381e2ce6d0f eef2af6a9d28fbee37b490a19c996fce {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00008.WXS.T.hg38 C3L-00008 UCEC WXS tumor CPT0001300005 f6924a26-a14f-45a3-b4bd-7a4592d34065_gdc_realn.bam 40349955110 BAM harmonized CPTAC3 4501f315-bf8f-4611-821a-797ef180e25b e41bf35e915511a629b0ab1240aa9d61 {"aliquot_tag": "ALQ_484ed258", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.MethArray.Green.A C3L-00009 LUAD Methylation_Array tissue_normal CPT0001390009 203027390073_R08C01_Grn.idat 13676219 IDAT Green NA CPTAC3 997008dc-c32f-4744-b4f9-ae686e57d0ad 0a6aabbe00835a07114f5fbd49dfbc5f {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.MethArray.Green.T C3L-00009 LUAD Methylation_Array tumor CPT0001380005 202176290116_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c591d380-c82b-45dd-b809-af2d9214e847 91354521ade29959d797f9269cf17497 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.MethArray.Red.A C3L-00009 LUAD Methylation_Array tissue_normal CPT0001390009 203027390073_R08C01_Red.idat 13676219 IDAT Red NA CPTAC3 284f40cf-9af0-4089-ac56-984d35595355 293b56b936430b8cf372124f8fe679c1 {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.MethArray.Red.T C3L-00009 LUAD Methylation_Array tumor CPT0001380005 202176290116_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 e1c17f35-722e-4825-85d8-c6e5b1a8efa3 c5bd486abed09f8fdbd10b92de68f00a {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.miRNA-Seq.A.hg38 C3L-00009 LUAD miRNA-Seq tissue_normal CPT0001390013 df939cc8-fa38-4599-89b6-4c7e1ec9ccd5_mirnaseq_gdc_realn.bam 294110704 BAM harmonized CPTAC3 7df12822-c7b2-4b5e-9569-13052d7412a2 158483d66e0646b21c0a2502b2dda98c {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.miRNA-Seq.S1_L006_R1.A C3L-00009 LUAD miRNA-Seq tissue_normal CPT0001390013 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L006_R1_001.unaln.bam 270786454 BAM S1_L006_R1 submitted_unaligned CPTAC3 338a6eff-c4b9-48d6-94bb-0c7d70d8d538 f1c082e2910a8ac30b64f8d32a6e8395 {"aliquot_tag": "ALQ_b526245d", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.miRNA-Seq.S9_L001_R1.T C3L-00009 LUAD miRNA-Seq tumor CPT0001380164 181113_UNC31-K00269_0164_AH23NNBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 213059140 BAM S9_L001_R1 submitted_unaligned CPTAC3 211df8dd-c9f1-491c-8b4b-b7f045904121 4a429ffadac12451c1de3281a5a0e0ea {"aliquot_tag": "ALQ_58a164be", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.miRNA-Seq.T.hg38 C3L-00009 LUAD miRNA-Seq tumor CPT0001380164 296a7602-6d26-4bde-80aa-b3d2002dfe9b_mirnaseq_gdc_realn.bam 231050217 BAM harmonized CPTAC3 fc1d256a-776e-4b68-b8ad-92e9e7d73a68 c33a273b62862dcfd24370858a1c7161 {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.RNA-Seq.chimeric.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.chimeric.gdc_realn.bam 123702031 BAM chimeric harmonized CPTAC3 6ac290fa-5404-4c83-bfff-7c3509af9d60 7306acabc5d8a8019615e2c6e7c352d3 {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.RNA-Seq.chimeric.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.chimeric.gdc_realn.bam 76255951 BAM chimeric harmonized CPTAC3 7e933af3-e1c7-4825-bcba-9826a3124890 28dacd861e41352938a1fd3cc8a57478 {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.RNA-Seq.genomic.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.genomic.gdc_realn.bam 9297385735 BAM genomic harmonized CPTAC3 0960ebb9-18b2-4a68-9690-cc60abb4cc9c 88d2f7b9ab6bcdd4e4ef45f1408ccd34 {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.RNA-Seq.genomic.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.genomic.gdc_realn.bam 8563651123 BAM genomic harmonized CPTAC3 50fd5e8a-0e34-483d-9596-34ce0b2467e9 22209ed390b94e16d24eb557c5111f59 {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.RNA-Seq.S23_L007_R1.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R1_001.fastq.gz 4042964948 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 3b80e84e-5031-4d2c-b05d-d4cbb0559a37 4c44c82a1ec01a0ca194e9ab54bcafa1 {"aliquot_tag": "ALQ_58a164be", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.RNA-Seq.S23_L007_R2.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R2_001.fastq.gz 4378806570 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 5b06320e-6066-4ff2-a03f-dc2382327b61 187d9e60c600625f71f07790835a211d {"aliquot_tag": "ALQ_58a164be", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.RNA-Seq.S8_L003_R1.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R1_001.fastq.gz 4585414783 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 efaa698c-4015-4478-80ae-f13272b9adc7 583dfe6563a36065ef2bfc386888e974 {"aliquot_tag": "ALQ_b526245d", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.RNA-Seq.S8_L003_R2.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R2_001.fastq.gz 4422468276 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 cb333933-3aec-4350-b5ea-ec92a896c339 95ed5fb2995fefbc7e0b69a6b25525d4 {"aliquot_tag": "ALQ_b526245d", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.RNA-Seq.transcriptome.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.transcriptome.gdc_realn.bam 10819981592 BAM transcriptome harmonized CPTAC3 8279d729-f50f-4ea4-84c5-880791ad2df0 b89b349c175fe91ca59cc1d74164d2ef {"aliquot_tag": "ALQ_b526245d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.RNA-Seq.transcriptome.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.transcriptome.gdc_realn.bam 11450323150 BAM transcriptome harmonized CPTAC3 4acbd5af-996f-4803-ad69-a408baae5a74 6b1fe457f98fb844e93d6e1cfa0222eb {"aliquot_tag": "ALQ_58a164be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.WGS.A C3L-00009 LUAD WGS tissue_normal CPT0001390009 CPT0001390009.WholeGenome.RP-1303.bam 61674000927 BAM submitted_aligned CPTAC3 920307a7-8475-4380-98e6-5418204783b7 56dc82e1b85294761b2b6d2281a1aede {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.WGS.A.hg38 C3L-00009 LUAD WGS tissue_normal CPT0001390009 a1e4e390-bc4b-4cfa-9c0d-8070c50822d2_wgs_gdc_realn.bam 93370190488 BAM harmonized CPTAC3 eaebf3df-300a-43bc-8463-8471604a263b c1f79921f1401309ce5da5b2b0079f35 {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.WGS.N C3L-00009 LUAD WGS blood_normal CPT0000100163 CPT0000100163.WholeGenome.RP-1303.bam 67171233693 BAM submitted_aligned CPTAC3 b9d67ad5-b0bd-4f65-9c90-7a1ad9cef2be 57c04a7b536e181eb3ba5435ca825eb7 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00009.WGS.N.hg38 C3L-00009 LUAD WGS blood_normal CPT0000100163 0d13c28d-fc75-4de2-9890-036fdd5dab0f_gdc_realn.bam 99973734904 BAM harmonized CPTAC3 8a906d7e-9577-4d0e-a546-f1eff1300fd8 f6a8b55497bffcac916db08d00ef5353 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00009.WGS.T C3L-00009 LUAD WGS tumor CPT0001380005 CPT0001380005.WholeGenome.RP-1303.bam 64269200300 BAM submitted_aligned CPTAC3 a5f78b33-045b-41a0-8530-a61d42c99fa1 7186c41332111f4514d0ba01a0fbc4e5 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.WGS.T.hg38 C3L-00009 LUAD WGS tumor CPT0001380005 2889a82c-e8b3-475e-9285-1e103003debb_gdc_realn.bam 96101101945 BAM harmonized CPTAC3 bcfd36b4-5001-4ec8-9eae-49196998045a b720c7cdc6878138ffbbfd8f86b4d3c2 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.WXS.A C3L-00009 LUAD WXS tissue_normal CPT0001390009 CPT0001390009.WholeExome.RP-1303.bam 33466557543 BAM submitted_aligned CPTAC3 8460e8b2-cca7-43fc-958e-708d638d7488 f866116e34a2469bd5d319a590bf527b {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.WXS.A.hg38 C3L-00009 LUAD WXS tissue_normal CPT0001390009 a1e4e390-bc4b-4cfa-9c0d-8070c50822d2_wxs_gdc_realn.bam 45083741987 BAM harmonized CPTAC3 794e4ba8-ea79-4fc4-b80d-b911e017d7d0 51754a0cb016006420aca5583b85c4e3 {"aliquot_tag": "ALQ_4ce8fc02", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00009.WXS.N C3L-00009 LUAD WXS blood_normal CPT0000100163 CPT0000100163.WholeExome.RP-1303.bam 43728422006 BAM submitted_aligned CPTAC3 99bca056-fa86-4225-b692-f0ad5489ccad 895d96d7606c9483338cff86493595e9 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00009.WXS.N.hg38 C3L-00009 LUAD WXS blood_normal CPT0000100163 0d13c28d-fc75-4de2-9890-036fdd5dab0f_gdc_realn.bam 59795676584 BAM harmonized CPTAC3 34f2e628-bdf8-4762-8c67-cd5ae09a1d46 9a1cd1add2ca3931b4fe45e10a09ddd2 {"aliquot_tag": "ALQ_1d0a1063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00009.WXS.T C3L-00009 LUAD WXS tumor CPT0001380005 CPT0001380005.WholeExome.RP-1303.bam 29973586790 BAM submitted_aligned CPTAC3 a5f29984-5472-4d7b-b65c-d357260366d5 f572ee1dd539002dadbc269515cbfd40 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00009.WXS.T.hg38 C3L-00009 LUAD WXS tumor CPT0001380005 2889a82c-e8b3-475e-9285-1e103003debb_gdc_realn.bam 40869302911 BAM harmonized CPTAC3 8cc90cf4-2598-4a6c-b064-5670df7d2545 016a7579deccbba0ae9dd615d22e6683 {"aliquot_tag": "ALQ_783e9999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.MethArray.Green.A C3L-00010 CCRCC Methylation_Array tissue_normal CPT0001230014 204930630086_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9391225e-8665-428a-9ca3-9c831610cc45 d7142bb9335d910adecbaec98e95bc49 {"aliquot_tag": "ALQ_aaae7afa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.MethArray.Green.T C3L-00010 CCRCC Methylation_Array tumor CPT0001220165 201557560050_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 fbaed5d4-e5d9-4f86-a4c9-4216eba5fed8 8815a5b31d8b683b620b82114d12e022 {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.MethArray.Red.A C3L-00010 CCRCC Methylation_Array tissue_normal CPT0001230014 204930630086_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 252efb65-ebcc-4ae4-a271-11d9a3c70263 3de4ccefcbb5ded66a95ad61f26717f9 {"aliquot_tag": "ALQ_aaae7afa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.MethArray.Red.T C3L-00010 CCRCC Methylation_Array tumor CPT0001220165 201557560050_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 59b116f3-8cc8-42f5-b05c-b4ae5e98f452 b9f8dcdcfa64e3d25627e5c84a786bf7 {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.miRNA-Seq.A.hg38 C3L-00010 CCRCC miRNA-Seq tissue_normal CPT0001230006 87d459d7-11e8-4472-89ea-80933a608d6d_mirnaseq_gdc_realn.bam 196072447 BAM harmonized CPTAC3 2ca87fc2-2c12-4502-b5d1-a52443b1597a 077ba4b78085c307fac03a9a3e8586e0 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.miRNA-Seq.S23_L005_R1.A C3L-00010 CCRCC miRNA-Seq tissue_normal CPT0001230006 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L005_R1_001.unaln.bam 175083377 BAM S23_L005_R1 submitted_unaligned CPTAC3 c09d03ea-588b-40d4-bf75-3e427af44a2d 6d16f308ea9708c12bd67e1988864621 {"aliquot_tag": "ALQ_5dbb2a97", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.miRNA-Seq.S6_L001_R1.T C3L-00010 CCRCC miRNA-Seq tumor CPT0001220164 181113_UNC31-K00269_0164_AH23NNBBXY_CACCGG_S6_L001_R1_001.unaln.bam 212450833 BAM S6_L001_R1 submitted_unaligned CPTAC3 0d717e4f-0134-45fa-81ac-9e2a62643fcd 0a8e1d0dd1899b3858bf13be69a9ff06 {"aliquot_tag": "ALQ_d94dafba", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.miRNA-Seq.T.hg38 C3L-00010 CCRCC miRNA-Seq tumor CPT0001220164 a80f5793-7cd3-41dd-a968-c42680d1c27e_mirnaseq_gdc_realn.bam 233378024 BAM harmonized CPTAC3 ad839ba7-ac05-41a7-a0f8-040f27cc69c9 0d7cd443c8e85ca9af19463d6d8311e9 {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.RNA-Seq.chimeric.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.chimeric.gdc_realn.bam 69063375 BAM chimeric harmonized CPTAC3 3ba03655-73b1-41db-b467-9026bc7c0041 4c13738a5da4d3f830206f1477f39e37 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.RNA-Seq.chimeric.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.chimeric.gdc_realn.bam 123920973 BAM chimeric harmonized CPTAC3 f94a9111-d42e-47fd-be95-94bce16d4864 65edf98cbfc05cb8efac5e3d9eb113cf {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.RNA-Seq.genomic.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.genomic.gdc_realn.bam 8429928591 BAM genomic harmonized CPTAC3 19c437b4-f1c4-483a-a7f6-d147a72f6b12 48abd0fb2c13728ee7ff05e11debf571 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.RNA-Seq.genomic.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.genomic.gdc_realn.bam 9473523842 BAM genomic harmonized CPTAC3 5a0b3885-1bff-415f-aad8-1741d0d29d44 e9dbea8afe32bff1ea15409c96847821 {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.RNA-Seq.S20_L006_R1.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R1_001.fastq.gz 4528605062 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 15ae9b4c-fdc6-4698-b6cc-36a13a5b418f d72bd8978738fc9b51e9221c119b6073 {"aliquot_tag": "ALQ_d94dafba", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.RNA-Seq.S20_L006_R2.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R2_001.fastq.gz 4949848179 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 f02d442c-e43b-47a5-aac4-f2e422e24927 e0145074be56a89ad9575d00a012db49 {"aliquot_tag": "ALQ_d94dafba", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.RNA-Seq.S32_L006_R1.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R1_001.fastq.gz 4362594256 FASTQ S32_L006_R1 submitted_unaligned CPTAC3 d7dc0a9b-5d44-494e-89b2-0bf8591cef68 717ee4c5c48244b65f2b68bfa9e1b8b1 {"aliquot_tag": "ALQ_5dbb2a97", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.RNA-Seq.S32_L006_R2.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R2_001.fastq.gz 4773363521 FASTQ S32_L006_R2 submitted_unaligned CPTAC3 35d3cc70-0727-46c0-8146-3c51ae013279 9c7e511ba27dbd6ba6c25ad4241a1009 {"aliquot_tag": "ALQ_5dbb2a97", "sample": "S32", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.RNA-Seq.transcriptome.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.transcriptome.gdc_realn.bam 11728815747 BAM transcriptome harmonized CPTAC3 30c7bf3a-6965-4f13-85a1-f9aa263a4f31 98eb4b5ce138ede5c975bf52cb5cc8f2 {"aliquot_tag": "ALQ_5dbb2a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.RNA-Seq.transcriptome.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.transcriptome.gdc_realn.bam 12871973727 BAM transcriptome harmonized CPTAC3 ebc24c17-4d8c-4057-b632-ce5357e00a43 776450c35940e3b9c335f7ded10c63c5 {"aliquot_tag": "ALQ_d94dafba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.WGS.A C3L-00010 CCRCC WGS tissue_normal CPT0001230009 CPT0001230009.WholeGenome.RP-1303.bam 66170860688 BAM submitted_aligned CPTAC3 d6b039cb-4b4a-406d-ab6b-cb1f465c86b0 6c684546dd013110cc3cb459212e9f4b {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.WGS.A.hg38 C3L-00010 CCRCC WGS tissue_normal CPT0001230009 7164a927-f35a-48c9-ba0c-e4904b529ee8_wgs_gdc_realn.bam 97258598016 BAM harmonized CPTAC3 cc565e7b-6c80-4453-b6cd-1a92da1deebf 58f17cbf9c34ef84da724d9487ad9692 {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.WGS.N C3L-00010 CCRCC WGS blood_normal CPT0000060163 CPT0000060163.WholeGenome.RP-1303.bam 136842292513 BAM submitted_aligned CPTAC3 78d4debc-1fc1-4cb4-8f59-0a5bd2d8b36e 1c6042637351027b5dd1e4040ab1e02a {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00010.WGS.N.hg38 C3L-00010 CCRCC WGS blood_normal CPT0000060163 5fc376df-4539-47ef-9749-44d36230a941_gdc_realn.bam 201653726943 BAM harmonized CPTAC3 2c1805ba-8194-46a9-8862-15685b11a712 90b42ad469297f51368d7155c37f3f4b {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00010.WGS.T C3L-00010 CCRCC WGS tumor CPT0001220165 CPT0001220165.WholeGenome.RP-1303.bam 142012054480 BAM submitted_aligned CPTAC3 25cb4189-1b2f-4793-b52b-ec96c35567ca fff209b696e382b4d9b223576a68387b {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.WGS.T.hg38 C3L-00010 CCRCC WGS tumor CPT0001220165 7a2e2088-9a18-4694-a4ca-f688ebd5331f_gdc_realn.bam 208042756639 BAM harmonized CPTAC3 defd1a75-47c4-48d2-ace0-fced371c4933 da3897b30056b7e7959baa6b8126980b {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.WXS.A C3L-00010 CCRCC WXS tissue_normal CPT0001230009 CPT0001230009.WholeExome.RP-1303.bam 36613162203 BAM submitted_aligned CPTAC3 f46792ba-7c62-4fc0-b683-03199aa28c54 6acb792fe53f7d914d45c0ee02d89f0c {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.WXS.A.hg38 C3L-00010 CCRCC WXS tissue_normal CPT0001230009 7164a927-f35a-48c9-ba0c-e4904b529ee8_wxs_gdc_realn.bam 49556079733 BAM harmonized CPTAC3 e36a93f3-c700-4fb0-a133-65d5614ab5d5 efa111b83dc21413b5bc9856f6905add {"aliquot_tag": "ALQ_cd043706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00010.WXS.N C3L-00010 CCRCC WXS blood_normal CPT0000060163 CPT0000060163.WholeExome.RP-1303.bam 34454726881 BAM submitted_aligned CPTAC3 98558d41-ebe6-4b31-b6a0-bee3afacfa5f f533c2766454b78390b2c4a1d8de687d {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00010.WXS.N.hg38 C3L-00010 CCRCC WXS blood_normal CPT0000060163 5fc376df-4539-47ef-9749-44d36230a941_gdc_realn.bam 48023683747 BAM harmonized CPTAC3 4a19a2d9-2a54-4cb1-aaf9-99309b5fb30a 439efb505ef15a4282bb8af045cbff06 {"aliquot_tag": "ALQ_59163666", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00010.WXS.T C3L-00010 CCRCC WXS tumor CPT0001220165 CPT0001220165.WholeExome.RP-1303.bam 35415729734 BAM submitted_aligned CPTAC3 04dfca48-088d-480f-8c97-8b82c8626c68 230172cb1b0aa099b0360401878965ae {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00010.WXS.T.hg38 C3L-00010 CCRCC WXS tumor CPT0001220165 7a2e2088-9a18-4694-a4ca-f688ebd5331f_gdc_realn.bam 48553190444 BAM harmonized CPTAC3 438ef2e5-292c-43e1-a9bb-6c022cd537f4 304cbe56091bb055a28bb965b1f44b3d {"aliquot_tag": "ALQ_ae4a9f2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.MethArray.Green.A C3L-00011 CCRCC Methylation_Array tissue_normal CPT0001350014 204930630109_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9902e090-3922-466f-a989-7ef4cf5cec1d 4d6e830068fa2dce02e30eeb2797a338 {"aliquot_tag": "ALQ_eeb25cff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.MethArray.Green.T C3L-00011 CCRCC Methylation_Array tumor CPT0001340005 201557540007_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9e85224d-5077-40b6-92dc-091c83278d22 682ae8e6ccd58d1b866226f0556a9fa0 {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.MethArray.Red.A C3L-00011 CCRCC Methylation_Array tissue_normal CPT0001350014 204930630109_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 83364d59-a4b1-4183-b5bf-9941c1f7cdb5 c0d8b9375378e3505b4abac9a90706a5 {"aliquot_tag": "ALQ_eeb25cff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.MethArray.Red.T C3L-00011 CCRCC Methylation_Array tumor CPT0001340005 201557540007_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 e4fd8e80-aa20-41c8-a477-62fc988ccb97 d65c642e216ba0c03d113a14c4f3ede4 {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.miRNA-Seq.A.hg38 C3L-00011 CCRCC miRNA-Seq tissue_normal CPT0001350006 e04fbc84-8560-4ddd-9406-81537e5044e3_mirnaseq_gdc_realn.bam 184111167 BAM harmonized CPTAC3 1b0cea08-4514-492f-bd2c-6bb432b938b8 aaaf13ba135ddbf172f1c692c3b5ec18 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.miRNA-Seq.S24_L005_R1.A C3L-00011 CCRCC miRNA-Seq tissue_normal CPT0001350006 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L005_R1_001.unaln.bam 165562262 BAM S24_L005_R1 submitted_unaligned CPTAC3 d656d526-67ab-4a03-ba73-a3eeb9a8030b 47e368d4b65dfd59402ee28bf59978f4 {"aliquot_tag": "ALQ_19a70c92", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.miRNA-Seq.S8_L005_R1.T C3L-00011 CCRCC miRNA-Seq tumor CPT0001340164 181119_UNC31-K00269_0165_AH27WCBBXY_CACTCA_S8_L005_R1_001.unaln.bam 193164535 BAM S8_L005_R1 submitted_unaligned CPTAC3 f3f2fc21-6b00-48a0-a065-8aad3634040d ed743f995d7803d9c3e553f81743cd95 {"aliquot_tag": "ALQ_9d5189bf", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.miRNA-Seq.T.hg38 C3L-00011 CCRCC miRNA-Seq tumor CPT0001340164 ae175b52-c84d-415a-99c2-c30182ad6c99_mirnaseq_gdc_realn.bam 207460413 BAM harmonized CPTAC3 04d17f0d-2784-49b3-b339-ade6c6ff42f3 b641daf7d3afb6d1b9e00152ee94c766 {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.RNA-Seq.chimeric.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.chimeric.gdc_realn.bam 93920816 BAM chimeric harmonized CPTAC3 cde8b397-b14d-4551-887c-68ab73529cc8 a8f215fad0e55258fe22fe88fed798c2 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.RNA-Seq.chimeric.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.chimeric.gdc_realn.bam 76207014 BAM chimeric harmonized CPTAC3 3b99edfd-51f3-4015-9c35-b450b1a5e57c 4213dd6e1fa6419880aef4445ba52026 {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.RNA-Seq.genomic.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.genomic.gdc_realn.bam 8481564508 BAM genomic harmonized CPTAC3 28109c75-2874-4466-89b3-01623efb8918 aeaab4651a6dab15dc0aa83cafd93a92 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.RNA-Seq.genomic.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.genomic.gdc_realn.bam 9218028419 BAM genomic harmonized CPTAC3 d2d422f1-d398-4e60-b572-adfa9bd756e4 26946328f944a5713ef0b0dcd691b08f {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.RNA-Seq.S59_L008_R1.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R1_001.fastq.gz 4229587764 FASTQ S59_L008_R1 submitted_unaligned CPTAC3 a75e662a-1759-4c8d-a41a-ee2d0e37156b f88867fb6fe2bd6f526bc85105acd41c {"aliquot_tag": "ALQ_19a70c92", "sample": "S59", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.RNA-Seq.S59_L008_R2.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R2_001.fastq.gz 4450162125 FASTQ S59_L008_R2 submitted_unaligned CPTAC3 5fb7500f-aafe-4cf3-b932-cbb5894ca6ea 5c7959f56b1e8be2afaaba669c8ceead {"aliquot_tag": "ALQ_19a70c92", "sample": "S59", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.RNA-Seq.S5_L002_R1.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 4527861646 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 d252be0f-df6b-49c5-899a-ff49ae494734 48d02ecafb894ce49c96a5e6c8e08f90 {"aliquot_tag": "ALQ_9d5189bf", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.RNA-Seq.S5_L002_R2.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 5020359841 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 ec72b0a4-24ba-49e4-9b07-36302c576165 68175725cba52c59195e2bcbbc0803a9 {"aliquot_tag": "ALQ_9d5189bf", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.RNA-Seq.transcriptome.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.transcriptome.gdc_realn.bam 10575132510 BAM transcriptome harmonized CPTAC3 1b5715fb-31f3-46c3-82a0-9a3363d1ca33 61835de0c1a85dc320fd7ac9fd7f4f00 {"aliquot_tag": "ALQ_19a70c92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.RNA-Seq.transcriptome.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.transcriptome.gdc_realn.bam 14532670630 BAM transcriptome harmonized CPTAC3 13b2f844-a209-4255-925b-a3aa2231fb41 22a5be919d155cf915235ab3b60915c1 {"aliquot_tag": "ALQ_9d5189bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.WGS.A C3L-00011 CCRCC WGS tissue_normal CPT0001350009 CPT0001350009.WholeGenome.RP-1303.bam 63843661770 BAM submitted_aligned CPTAC3 e3a74633-2d2a-4ab4-bd6f-9b2ef354fa30 f825d81f1b7a871608c7423b0589a3b3 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.WGS.A.hg38 C3L-00011 CCRCC WGS tissue_normal CPT0001350009 5637db92-8716-4190-8c2e-9a32bb099cf6_wgs_gdc_realn.bam 94084523957 BAM harmonized CPTAC3 8f6c22b5-83c0-4518-bc4e-a5db09f87e97 70aef02d165226e2de6964d597e249d3 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.WGS.N C3L-00011 CCRCC WGS blood_normal CPT0000090163 CPT0000090163.WholeGenome.RP-1303.bam 145138045697 BAM submitted_aligned CPTAC3 8a4aa148-fa9f-4eee-80ab-9d649f2a6431 494a47fa5d3888cd0e5d003b42afe5f9 {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00011.WGS.N.hg38 C3L-00011 CCRCC WGS blood_normal CPT0000090163 1fd51af9-c67f-4c54-8c8e-db4aef40d5ad_gdc_realn.bam 211685129229 BAM harmonized CPTAC3 10bbe16c-ba5d-4489-84d1-dbdd5ffa54ed 9d47ddb068ca77e7c1acb85f3cc37971 {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00011.WGS.T C3L-00011 CCRCC WGS tumor CPT0001340005 CPT0001340005.WholeGenome.RP-1303.bam 131364438329 BAM submitted_aligned CPTAC3 17ea2f66-6dba-4b66-afa7-491b715b8865 d56a19f87cd3407d9928412ab137bfcc {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.WGS.T.hg38 C3L-00011 CCRCC WGS tumor CPT0001340005 f47b3035-cf5e-4905-8859-1459781618fc_gdc_realn.bam 189303516909 BAM harmonized CPTAC3 215cedd8-5ce2-4c50-a85d-9f7197e6472c 8dcd3747395595a93478b3b403a2c2ba {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.WXS.A C3L-00011 CCRCC WXS tissue_normal CPT0001350009 CPT0001350009.WholeExome.RP-1303.bam 29896555112 BAM submitted_aligned CPTAC3 96424254-ed70-443e-a152-bd43341aa7d0 abb894b1a949abbc1f2ca11acec8abd6 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.WXS.A.hg38 C3L-00011 CCRCC WXS tissue_normal CPT0001350009 5637db92-8716-4190-8c2e-9a32bb099cf6_wxs_gdc_realn.bam 40686299816 BAM harmonized CPTAC3 5d3c8984-b9d1-4002-9877-bde7004f5b20 da7121ceb1a842bb65d20516e8d5c6d8 {"aliquot_tag": "ALQ_89181103", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00011.WXS.N C3L-00011 CCRCC WXS blood_normal CPT0000090163 CPT0000090163.WholeExome.RP-1303.bam 31071504458 BAM submitted_aligned CPTAC3 905880de-2b08-4fb7-8e57-d3b79efc5fb7 8389b5c0be0eebec7db70d5388ecb44e {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00011.WXS.N.hg38 C3L-00011 CCRCC WXS blood_normal CPT0000090163 1fd51af9-c67f-4c54-8c8e-db4aef40d5ad_gdc_realn.bam 43773407484 BAM harmonized CPTAC3 c21dd423-3756-4eff-baac-5bba006dcddc cbcca342973ce66509ffce2f320a554b {"aliquot_tag": "ALQ_db46a1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00011.WXS.T C3L-00011 CCRCC WXS tumor CPT0001340005 CPT0001340005.WholeExome.RP-1303.bam 28970151226 BAM submitted_aligned CPTAC3 ecb947fc-fc74-4e9b-a11a-21cb025f50d9 af5b9bf38036a88238ab98a11e5f868c {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00011.WXS.T.hg38 C3L-00011 CCRCC WXS tumor CPT0001340005 f47b3035-cf5e-4905-8859-1459781618fc_gdc_realn.bam 39407921534 BAM harmonized CPTAC3 2f688f41-2b8e-4282-a2b8-ce07390d4c4b c21a7ea4231aff58360aa30c9ddaa11e {"aliquot_tag": "ALQ_bdce7498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.MethArray.Green.A C3L-00017 PDA Methylation_Array tissue_normal CPT0000270008 203561450017_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e9daa8b4-e05b-475f-a37c-efe598df3539 f547adfbac7c02930af0a769802b9107 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.MethArray.Green.T C3L-00017 PDA Methylation_Array tumor CPT0000250005 202178770006_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3efda741-accc-461e-a1e8-78c82d7c63eb ac101243e5cf64bf40ccdfa1945d8a08 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.MethArray.Red.A C3L-00017 PDA Methylation_Array tissue_normal CPT0000270008 203561450017_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 2661771e-2854-4c68-ba50-156b41fb6a72 ae21f85986577294ad25fa9d069a9299 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.MethArray.Red.T C3L-00017 PDA Methylation_Array tumor CPT0000250005 202178770006_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 b9f50267-3fc2-42dd-a9ad-6c6c12ddf8eb bb2209a84dc734daf865c09c252f13da {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.miRNA-Seq.A.hg38 C3L-00017 PDA miRNA-Seq tissue_normal CPT0000270006 25542831-ec73-47ac-bf88-7ff8da45c341_mirnaseq_gdc_realn.bam 281278348 BAM harmonized CPTAC3 79b378f0-968f-4d13-abe6-647051c980b7 b5b4d268e18463799e3e4b1dbec91e41 {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.miRNA-Seq.S31_L002_R1.T C3L-00017 PDA miRNA-Seq tumor CPT0000250008 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L002_R1_001.unaln.bam 314125962 BAM S31_L002_R1 submitted_unaligned CPTAC3 047b497c-8c8a-400f-9ccb-bba22c7a1c2f e3fc260b7605d8df7ea907dcb50bfbb7 {"aliquot_tag": "ALQ_9334f984", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.miRNA-Seq.S47_L002_R1.A C3L-00017 PDA miRNA-Seq tissue_normal CPT0000270006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 257328449 BAM S47_L002_R1 submitted_unaligned CPTAC3 89834361-a55f-4bee-a4c5-23ee9e95dbe6 d895bbf9dabed106b39294e6ea119759 {"aliquot_tag": "ALQ_e4c87e3", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.miRNA-Seq.T.hg38 C3L-00017 PDA miRNA-Seq tumor CPT0000250008 2ef609a6-cc14-4705-b02a-fb080fb25796_mirnaseq_gdc_realn.bam 342883849 BAM harmonized CPTAC3 bcdb1f0b-bbe9-4606-a0f6-29a116719508 9e7902427780f7dea55569106a11dc70 {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.RNA-Seq.chimeric.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.chimeric.gdc_realn.bam 139214517 BAM chimeric harmonized CPTAC3 143f0d4b-922f-4765-aa64-bc67a31ab800 8a88b166a19aae523f9ac3fcb2f1f57e {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.RNA-Seq.chimeric.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.chimeric.gdc_realn.bam 142374120 BAM chimeric harmonized CPTAC3 8326ad43-5805-4851-be31-c2861e6c9564 31de717431230667cccfff5136cea035 {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.genomic.gdc_realn.bam 9982605016 BAM genomic harmonized CPTAC3 5ab6faef-c481-4d0c-92f9-5944b7dfd039 986d14f57362a146f385d443ace2db4b {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.genomic.gdc_realn.bam 7422416912 BAM genomic harmonized CPTAC3 1ba99f67-3232-4c24-99d1-6e0e25129e33 6c0c18c9b39ea991cab51953849e8a2c {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.RNA-Seq.S14_L004_R1.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R1_001.fastq.gz 3555365035 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 d2b5f6b3-828b-4320-9e4d-4b2eaa4e7e6f 74d89675af92eec43b7f5347e678c16a {"aliquot_tag": "ALQ_9334f984", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.RNA-Seq.S14_L004_R2.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R2_001.fastq.gz 4020489440 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 4f7a1cdc-e30a-407f-927d-3eb0e4185534 cab2fec0f481139de189358c73230131 {"aliquot_tag": "ALQ_9334f984", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.RNA-Seq.S59_L007_R1.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R1_001.fastq.gz 4470007340 FASTQ S59_L007_R1 submitted_unaligned CPTAC3 7829f978-5fd7-436a-9ec2-2e58a7bcb1f7 82a71a50e8f0a2225e76b1edb78e1eae {"aliquot_tag": "ALQ_e4c87e3", "sample": "S59", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.RNA-Seq.S59_L007_R2.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R2_001.fastq.gz 4682486832 FASTQ S59_L007_R2 submitted_unaligned CPTAC3 8f7d0b77-134e-4216-9d8d-411f0d7ed0ed 41c922b894a8950361f502647b659222 {"aliquot_tag": "ALQ_e4c87e3", "sample": "S59", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.RNA-Seq.transcriptome.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.transcriptome.gdc_realn.bam 11565402806 BAM transcriptome harmonized CPTAC3 61e5bc4d-5850-4b8d-a324-9ab1101fec80 383c8a2a1900b8fbab791774f096fbbd {"aliquot_tag": "ALQ_e4c87e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.RNA-Seq.transcriptome.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.transcriptome.gdc_realn.bam 10322547280 BAM transcriptome harmonized CPTAC3 da0d3a7a-7e22-4a23-9111-7a2070097da3 3f2ccdf0a555de7c2640e255e8be5cc2 {"aliquot_tag": "ALQ_9334f984", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.Targeted.T C3L-00017 PDA Targeted_Sequencing tumor CPT0000250005_1 CPT0000250005_1.CustomSelection.RP-1303.PDO-18786.bam 5165621997 BAM submitted_aligned CPTAC3 30e70748-ade6-4d8e-a4a3-52abe0007a5d fd9ab30598aafba43c7f420a69828ad6 {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.Targeted.T.hg38 C3L-00017 PDA Targeted_Sequencing tumor CPT0000250005_1 b6dfbba3-5e2c-40c1-8246-1f47c70490a2_targetedsequencing_gdc_realn.bam 7174905772 BAM harmonized CPTAC3 3b901733-abe1-4210-b613-997ebf7d72e9 940cde595e1416d11fd832b0e3756154 {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.WGS.A C3L-00017 PDA WGS tissue_normal CPT0000270008 CPT0000270008.WholeGenome.RP-1303.bam 52958782756 BAM submitted_aligned CPTAC3 87f86471-d9bf-4b5c-90cb-60293a43c136 df7c547cce14141c44cd625ae944df1e {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.WGS.A.hg38 C3L-00017 PDA WGS tissue_normal CPT0000270008 3daadcf0-24a3-4f29-a9e3-cb177cc7004e_wgs_gdc_realn.bam 76800590904 BAM harmonized CPTAC3 f60e0cf4-9070-4d80-a522-e5eda6e81c1e 980cb7e57bef3448581e206efd02f804 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.WGS.N C3L-00017 PDA WGS blood_normal CPT0000580002 CPT0000580002.WholeGenome.RP-1303.bam 76912117733 BAM submitted_aligned CPTAC3 ccc889ff-4b3a-49d7-b85f-07698f9e3e07 56c2cdd84da291216a073f06f6d0271f {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00017.WGS.N.hg38 C3L-00017 PDA WGS blood_normal CPT0000580002 6aa9462a-bda4-4c7e-9049-dfd4e79fab18_gdc_realn.bam 113878540714 BAM harmonized CPTAC3 2eb95024-ed2d-471d-bcf7-199ef3348719 d4154cef93134009a0959471d11b21e4 {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00017.WGS.T C3L-00017 PDA WGS tumor CPT0000250005 CPT0000250005.WholeGenome.RP-1303.bam 75201379743 BAM submitted_aligned CPTAC3 6c5d60a8-05fa-4948-b3e6-386660b666da 70924c50764e234fd16dbb068a3f191e {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.WGS.T.hg38 C3L-00017 PDA WGS tumor CPT0000250005 90daf6b6-b405-431c-bb0d-6f52df3e6ef9_gdc_realn.bam 112204550063 BAM harmonized CPTAC3 ca8326ec-c84d-4efa-a39d-25f53e5a8c2a c21b73967367af42eec4a33235a64854 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.WXS.A C3L-00017 PDA WXS tissue_normal CPT0000270008 CPT0000270008.WholeExome.RP-1303.bam 29076941006 BAM submitted_aligned CPTAC3 197e3d81-c65e-4051-bcd2-e01c4ef1965f ea83a83ac48ef314c98437c8feaf61fd {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.WXS.A.hg38 C3L-00017 PDA WXS tissue_normal CPT0000270008 3daadcf0-24a3-4f29-a9e3-cb177cc7004e_wxs_gdc_realn.bam 40202532318 BAM harmonized CPTAC3 bcf4718c-781d-4f7b-befb-97091a44b9ad c1ee5a8ecd70bb4b5cb8999623ae1998 {"aliquot_tag": "ALQ_e9f4aae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00017.WXS.N C3L-00017 PDA WXS blood_normal CPT0000580002 CPT0000580002.WholeExome.RP-1303.bam 33108244009 BAM submitted_aligned CPTAC3 37992895-dbcb-434e-8fea-d04a35ae3512 78cff33f5c375d174cf690b6a3278758 {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00017.WXS.N.hg38 C3L-00017 PDA WXS blood_normal CPT0000580002 6aa9462a-bda4-4c7e-9049-dfd4e79fab18_gdc_realn.bam 46051956754 BAM harmonized CPTAC3 f99797be-7884-4f95-9052-7637fe7de122 a42e0531b66e75b5c86b75fdb29cd8b9 {"aliquot_tag": "ALQ_9674e493", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00017.WXS.T C3L-00017 PDA WXS tumor CPT0000250005_1 CPT0000250005_1.WholeExome.RP-1303.bam 52414701226 BAM submitted_aligned CPTAC3 6004cd9d-9c4e-4259-b57c-1ab203015d2a d9c4ba97a0e9b59eefec9558051348c4 {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.WXS.T C3L-00017 PDA WXS tumor CPT0000250005 CPT0000250005.WholeExome.RP-1303.bam 25526686050 BAM submitted_aligned CPTAC3 60b88883-2f6d-4cff-b714-d0f208331f8e a666a8d515b4c6f8243fc998bcfa03b7 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.WXS.T.hg38 C3L-00017 PDA WXS tumor CPT0000250005_1 b6dfbba3-5e2c-40c1-8246-1f47c70490a2_wxs_gdc_realn.bam 70928730248 BAM harmonized CPTAC3 4e2c5edf-8162-46f2-bb3e-11de6846c0e3 bacca1b690a7116b0e312469acf599ec {"aliquot_tag": "ALQ_be7244ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00017.WXS.T.hg38 C3L-00017 PDA WXS tumor CPT0000250005 90daf6b6-b405-431c-bb0d-6f52df3e6ef9_gdc_realn.bam 34757652255 BAM harmonized CPTAC3 83ea0e10-82b1-4092-b8a4-770e179ef4cd b29ccc6a9e383fd2a3b3cb96d1acb6c6 {"aliquot_tag": "ALQ_ed858539", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.MethArray.Green.A C3L-00026 CCRCC Methylation_Array tissue_normal CPT0001510014 204930640083_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 364ecfcb-69ae-48fe-a4cf-6f5234fc6071 94cc77c83d32ea9630ab070407f045d8 {"aliquot_tag": "ALQ_cd6b1922", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.MethArray.Green.T C3L-00026 CCRCC Methylation_Array tumor CPT0001500005 201557560049_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7c2b8116-e486-4120-b402-73f9e001f138 14147deb18e98d04f27dd3946930ccc7 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.MethArray.Red.A C3L-00026 CCRCC Methylation_Array tissue_normal CPT0001510014 204930640083_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 a10b34be-2a2f-4e6c-bcd4-31bab525e8ab 2173932ccbdf924dfafad1983b9078f0 {"aliquot_tag": "ALQ_cd6b1922", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.MethArray.Red.T C3L-00026 CCRCC Methylation_Array tumor CPT0001500005 201557560049_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 0733f93d-6e41-4445-93b1-eebb01f92aea b006c6e5ac4ed7c695332d56cd1cd700 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.miRNA-Seq.A.hg38 C3L-00026 CCRCC miRNA-Seq tissue_normal CPT0001510006 07135762-40dd-42ed-816f-04d268714d2f_mirnaseq_gdc_realn.bam 454025786 BAM harmonized CPTAC3 3915d84c-c84b-4667-8156-74428c58e041 6a09b0062adc8e9120e19eda47032ceb {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.miRNA-Seq.S11_L001_R1.T C3L-00026 CCRCC miRNA-Seq tumor CPT0001500164 181113_UNC31-K00269_0164_AH23NNBBXY_CATTTT_S11_L001_R1_001.unaln.bam 199590031 BAM S11_L001_R1 submitted_unaligned CPTAC3 2333fa94-9d2b-4475-a329-47f94361b99b 5fcb35b32e7c335f1b9e3a8f712a2e18 {"aliquot_tag": "ALQ_be88cc62", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.miRNA-Seq.S1_L005_R1.A C3L-00026 CCRCC miRNA-Seq tissue_normal CPT0001510006 181119_UNC31-K00269_0165_AH27WCBBXY_ACTGAT_S1_L005_R1_001.unaln.bam 424738050 BAM S1_L005_R1 submitted_unaligned CPTAC3 cc7863ce-6424-48a5-9694-a1d42e40dd07 9dc8993f433bd2cca2c04034576be71a {"aliquot_tag": "ALQ_3a7e494f", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.miRNA-Seq.T.hg38 C3L-00026 CCRCC miRNA-Seq tumor CPT0001500164 fe2247ec-0a0d-4f1a-a807-e6f64f9968fc_mirnaseq_gdc_realn.bam 215784336 BAM harmonized CPTAC3 6043cad4-0b59-46cf-8bd9-34fe7844c094 19d93cc6ded84e853a6bd36586528a03 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.RNA-Seq.chimeric.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.chimeric.gdc_realn.bam 70484774 BAM chimeric harmonized CPTAC3 c323dc33-9c51-4ecc-9548-17fe3ebc43dd c5f028e6b75eba2f2db38e40683155f0 {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.RNA-Seq.chimeric.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.chimeric.gdc_realn.bam 74899587 BAM chimeric harmonized CPTAC3 6999cb2d-3519-414b-a9bb-4caefca18b8c d182038f21995655d0c6aecf7ee1c753 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.RNA-Seq.genomic.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.genomic.gdc_realn.bam 8641894267 BAM genomic harmonized CPTAC3 c4b806cb-9ab2-406f-9347-b3b1a71d3eaa 51ca6cf6cb38f2cb247f7015fa3fc768 {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.RNA-Seq.genomic.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.genomic.gdc_realn.bam 8797894258 BAM genomic harmonized CPTAC3 755caff9-dc86-4e8e-bfdb-72a195611e5e 9f9e22ddd9d1b6bbb0f7c659e699e8c5 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.RNA-Seq.S16_L005_R1.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4211339697 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 aa4fa0b3-1708-4638-8bab-55b0ba3f5248 c080508a0dc489706dbf54f7ddfd08cd {"aliquot_tag": "ALQ_be88cc62", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.RNA-Seq.S16_L005_R2.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4627325177 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 b25a3a34-58ce-4d86-9e1b-c21a39ee91e4 390dd7454a32b452d70d6cc7b8028f3f {"aliquot_tag": "ALQ_be88cc62", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.RNA-Seq.S58_L008_R1.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R1_001.fastq.gz 4302255408 FASTQ S58_L008_R1 submitted_unaligned CPTAC3 4f85aa59-7db7-49dc-aa05-7b6b027b2791 c892c90f42d872f030f21f6ed7dbb631 {"aliquot_tag": "ALQ_3a7e494f", "sample": "S58", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.RNA-Seq.S58_L008_R2.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R2_001.fastq.gz 4209761756 FASTQ S58_L008_R2 submitted_unaligned CPTAC3 9648977f-b52a-4043-9b7a-04ecc1647e98 1ab4fdab8936f80704d22e59942ed13d {"aliquot_tag": "ALQ_3a7e494f", "sample": "S58", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.RNA-Seq.transcriptome.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.transcriptome.gdc_realn.bam 11270808038 BAM transcriptome harmonized CPTAC3 611def6f-a25a-4df0-8965-17c63547d3c2 4a5501aed8e4afff1b5999cc55da77df {"aliquot_tag": "ALQ_3a7e494f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.RNA-Seq.transcriptome.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.transcriptome.gdc_realn.bam 12490368435 BAM transcriptome harmonized CPTAC3 3552cc9a-e3b0-484b-862f-742d61253817 2997bde8d8afa17f7cb9b536d44c3995 {"aliquot_tag": "ALQ_be88cc62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.WGS.A C3L-00026 CCRCC WGS tissue_normal CPT0001510009 CPT0001510009.WholeGenome.RP-1303.bam 56827082574 BAM submitted_aligned CPTAC3 06d06fdd-e16f-4652-879b-9034a91626b7 6f39be937d7b1f47d32e3e3fc85374cb {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.WGS.A.hg38 C3L-00026 CCRCC WGS tissue_normal CPT0001510009 e7e7be46-4ae9-4c07-8354-c3c310ea060a_wgs_gdc_realn.bam 83508451153 BAM harmonized CPTAC3 29bdccbd-b072-49d0-bfe1-721c3319a29a 30ea7eef1f58ef0cfa7a7331907393fe {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.WGS.N C3L-00026 CCRCC WGS blood_normal CPT0000130163 CPT0000130163.WholeGenome.RP-1303.bam 130400091410 BAM submitted_aligned CPTAC3 05797578-9d15-4ef5-ad0d-b5858c14ae69 34bc341edb288474c17e138ac2de6dde {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00026.WGS.N.hg38 C3L-00026 CCRCC WGS blood_normal CPT0000130163 4f432fe5-856b-4678-bd0c-e3170f1bf7d5_gdc_realn.bam 189691572924 BAM harmonized CPTAC3 6dcb94c3-b18b-4a17-8c51-3bb6beafa8ba c4dc475403912e65d2335d10e7e114df {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00026.WGS.T C3L-00026 CCRCC WGS tumor CPT0001500005 CPT0001500005.WholeGenome.RP-1303.bam 142142287667 BAM submitted_aligned CPTAC3 5d8dbed5-8688-4b46-9373-e53449d3328e bf677a25af44e7a5409b8bc854aa15e4 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.WGS.T.hg38 C3L-00026 CCRCC WGS tumor CPT0001500005 7fb72fd0-9f8d-46d5-bd34-9216e4be58ff_gdc_realn.bam 205257026715 BAM harmonized CPTAC3 f195488e-ec5c-446b-8f99-ec53af93c25c f720d8c1798d5f39932ce309cda1f0cd {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.WXS.A C3L-00026 CCRCC WXS tissue_normal CPT0001510009 CPT0001510009.WholeExome.RP-1303.bam 32033874579 BAM submitted_aligned CPTAC3 1ad9c57c-6dbb-4899-92e2-aee7e5e6bca9 95e3b94a3698f8dbe0676d49e0d746bb {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.WXS.A.hg38 C3L-00026 CCRCC WXS tissue_normal CPT0001510009 e7e7be46-4ae9-4c07-8354-c3c310ea060a_wxs_gdc_realn.bam 43401231835 BAM harmonized CPTAC3 f8aabf06-5c24-4089-925f-93468d6b1f22 3564cbeef9fff98f09ac512dfba79b09 {"aliquot_tag": "ALQ_aac154de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00026.WXS.N C3L-00026 CCRCC WXS blood_normal CPT0000130163 CPT0000130163.WholeExome.RP-1303.bam 31499035907 BAM submitted_aligned CPTAC3 5328ec3b-0f91-474a-85b0-5848c90a4566 69a08b5d1e46ea3a0bc58f6b827d8467 {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00026.WXS.N.hg38 C3L-00026 CCRCC WXS blood_normal CPT0000130163 4f432fe5-856b-4678-bd0c-e3170f1bf7d5_gdc_realn.bam 44121009766 BAM harmonized CPTAC3 7186023a-8b56-425b-a815-9ca685189848 893f7aa4671225bcbc46044a1b1e0439 {"aliquot_tag": "ALQ_5aaa6ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00026.WXS.T C3L-00026 CCRCC WXS tumor CPT0001500005 CPT0001500005.WholeExome.RP-1303.bam 32854345076 BAM submitted_aligned CPTAC3 db80838b-a6a7-45b6-889e-7ea115fb9d65 b2727bceebf2e5746877029ff3deff1c {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00026.WXS.T.hg38 C3L-00026 CCRCC WXS tumor CPT0001500005 7fb72fd0-9f8d-46d5-bd34-9216e4be58ff_gdc_realn.bam 44648031817 BAM harmonized CPTAC3 46d9f1ef-7100-464b-9137-37f358f2c721 bdd63985347b28aec3bfc8410b700bd5 {"aliquot_tag": "ALQ_9e173145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00029.MethArray.Green.T C3L-00029 SAR Methylation_Array tumor CPT0001000005 202184990066_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3b324ab4-02c3-41e6-9518-07dcf98fc945 9c3179e96f044e5f416e04f71ac68ee3 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.MethArray.Red.T C3L-00029 SAR Methylation_Array tumor CPT0001000005 202184990066_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 29720c1c-ae42-4df2-a28a-3cc78c9fe7bb d2f3e118eb3263a12230b3b66e4e09a6 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.miRNA-Seq.S3_L001_R1.T C3L-00029 SAR miRNA-Seq tumor CPT0001000164 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 320594561 BAM S3_L001_R1 submitted_unaligned CPTAC3 981a34d1-38e1-4799-848f-de4fa4add2ca 79005404e980e57165072deb2465aced {"aliquot_tag": "ALQ_ee455dd1", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.miRNA-Seq.T.hg38 C3L-00029 SAR miRNA-Seq tumor CPT0001000164 5cebba2b-2399-4d25-ad36-a2cb54cf99df_mirnaseq_gdc_realn.bam 360391898 BAM harmonized CPTAC3 dfe79d0c-2cbf-41d4-95bb-7ff56135ae29 faf3413376ce2f3682c6980ad4aaa637 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.RNA-Seq.chimeric.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.chimeric.gdc_realn.bam 77023763 BAM chimeric harmonized CPTAC3 20c1cdba-eb9a-4cac-b6d4-de8ff07b6ae9 48086539c6e88e7a22e14e7b1f1e6677 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.RNA-Seq.genomic.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.genomic.gdc_realn.bam 7796614883 BAM genomic harmonized CPTAC3 307e1b0f-dcf7-4390-bb9a-1e04815080ce 39dfef6e55d7c67b780d7aa32b64ae34 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.RNA-Seq.S15_L005_R1.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3711574784 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 75f83913-b8dc-4d06-b26b-d9f3f8358054 8556730781b046f1090197d315e2b7c1 {"aliquot_tag": "ALQ_ee455dd1", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.RNA-Seq.S15_L005_R2.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4058006716 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 9f8cd923-494c-45f8-9519-4fb29f424b33 8bbf8654bfd2ac08513f24cf0bdadee2 {"aliquot_tag": "ALQ_ee455dd1", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.RNA-Seq.transcriptome.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.transcriptome.gdc_realn.bam 9886389928 BAM transcriptome harmonized CPTAC3 6dc883a5-4f0b-4327-a973-9e51a1932162 7d461994e396dc9b849101fd416a3df4 {"aliquot_tag": "ALQ_ee455dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.WGS.N C3L-00029 SAR WGS blood_normal CPT0000000163 CPT0000000163.WholeGenome.RP-1303.bam 79156050194 BAM submitted_aligned CPTAC3 7c9d3332-8812-4d65-a49b-aa48580f8575 21088a933be9c92ec769ccd7c563e849 {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00029.WGS.N.hg38 C3L-00029 SAR WGS blood_normal CPT0000000163 78e3baaf-7223-45a7-9126-5f5694c4e36a_gdc_realn.bam 121288730501 BAM harmonized CPTAC3 54554926-c19a-43cb-9bf6-896a1a6d6765 c95fdd97e2e7185ccef4f3c627c53cd1 {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00029.WGS.T C3L-00029 SAR WGS tumor CPT0001000005 CPT0001000005.WholeGenome.RP-1303.bam 75787194275 BAM submitted_aligned CPTAC3 95a6ffce-ecea-4832-96bc-945f36da4aeb ded2ee7994319804eacef38a5a00e8ef {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.WGS.T.hg38 C3L-00029 SAR WGS tumor CPT0001000005 86c234c7-1d32-4970-904d-0ba01fc84231_gdc_realn.bam 112595367333 BAM harmonized CPTAC3 e33f89a4-e6ee-404b-a2b6-497d6e5903e2 766e63b36cdb5c224cacb2932e5503ca {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.WXS.N C3L-00029 SAR WXS blood_normal CPT0000000163 CPT0000000163.WholeExome.RP-1303.bam 37015180104 BAM submitted_aligned CPTAC3 c4a2eef8-1400-4cf5-967a-33de4e420b48 6cfec46dbe530cb614906ac61127564f {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00029.WXS.N.hg38 C3L-00029 SAR WXS blood_normal CPT0000000163 78e3baaf-7223-45a7-9126-5f5694c4e36a_gdc_realn.bam 50703443140 BAM harmonized CPTAC3 2702a70c-54b3-4bb1-a3d4-bb4d1d106971 1c1da178ebbdb9ca43091d281e9640e7 {"aliquot_tag": "ALQ_d656c3c6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00029.WXS.T C3L-00029 SAR WXS tumor CPT0001000005 CPT0001000005.WholeExome.RP-1303.bam 26052343542 BAM submitted_aligned CPTAC3 8d2485ef-8595-4330-8d0b-9b3b81bf6886 ffe33326df4a53862a787766b4fe4181 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00029.WXS.T.hg38 C3L-00029 SAR WXS tumor CPT0001000005 86c234c7-1d32-4970-904d-0ba01fc84231_gdc_realn.bam 35331408597 BAM harmonized CPTAC3 2aee09e9-9c2d-4220-8e85-491686272958 797fabd550e86d84371e8b34798526e2 {"aliquot_tag": "ALQ_cedaa0f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00032.MethArray.Green.T C3L-00032 UCEC Methylation_Array tumor CPT0001420005 201557560056_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5d9a0392-3fac-49c1-ac4c-6f57b24dba21 89e30483920cbb3bb065c6af69b77ea3 {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.MethArray.Red.T C3L-00032 UCEC Methylation_Array tumor CPT0001420005 201557560056_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 6d7604ca-2f77-4c93-9053-ec08558ce19c ee636428e54e382e6561a2cf46a17947 {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.miRNA-Seq.S10_L001_R1.T C3L-00032 UCEC miRNA-Seq tumor CPT0001420164 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L001_R1_001.unaln.bam 225139167 BAM S10_L001_R1 submitted_unaligned CPTAC3 3b3e6020-a967-493f-b19b-86b14b28ee50 9c580bb8aac952f54ff62811b1bff4dc {"aliquot_tag": "ALQ_f144ca7", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.miRNA-Seq.T.hg38 C3L-00032 UCEC miRNA-Seq tumor CPT0001420164 f4a5b588-dee4-48b0-880a-e2ac2a5c87d7_mirnaseq_gdc_realn.bam 246200924 BAM harmonized CPTAC3 f7e768cd-245f-4f33-ac75-e874907d92a6 cfce7326413875bcf7eac441197588d2 {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.chimeric.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.chimeric.gdc_realn.bam 67237437 BAM chimeric harmonized CPTAC3 9a75895a-fbc9-464d-abab-4e4fd167d332 40ca6387bed0591d562b13ce1d920fbc {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.chimeric.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.chimeric.gdc_realn.bam 160872272 BAM chimeric harmonized CPTAC3 809fec11-69ae-498e-bc60-3f7da2d62afd b17dd31d3553a1fa2a0d93206bb58d37 {"aliquot_tag": "ALQ_f17b21d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.genomic.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.genomic.gdc_realn.bam 8489533560 BAM genomic harmonized CPTAC3 adba109d-cb97-4da2-a002-8c7c83e4dcfe 7102c0e1e214948bf602c4b5549f661b {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.genomic.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.genomic.gdc_realn.bam 8946329719 BAM genomic harmonized CPTAC3 2aea5b0a-4ab2-485f-88ae-624907c35405 414425ee8b26d75a559b25edd8a9abd0 {"aliquot_tag": "ALQ_f17b21d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.S18_L005_R1.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3824767824 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 9ae968f3-691d-4db3-9977-1ab3e5af9085 42601b29cb4c2d6a64cec25a7575ba62 {"aliquot_tag": "ALQ_f144ca7", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.S18_L005_R2.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4237608778 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 423b6b09-02aa-4f47-9241-f75c1dad1161 ba4d70b682cafb918c62b01756e4e3f4 {"aliquot_tag": "ALQ_f144ca7", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.S80_R1.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R1_001.fastq.gz 5571302043 FASTQ S80_R1 submitted_unaligned CPTAC3 bfcd83b0-f3bc-4d11-93a9-d207bdddc1ff 3300d0aac581bbe35103d0af6ec8b811 {"aliquot_tag": "ALQ_f17b21d8", "sample": "S80", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.S80_R2.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R2_001.fastq.gz 5840340576 FASTQ S80_R2 submitted_unaligned CPTAC3 d225c652-9193-4847-b2e0-cd4c88b77fbe 3471561b2096aa5ae3d2efaa52b52f71 {"aliquot_tag": "ALQ_f17b21d8", "sample": "S80", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.transcriptome.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.transcriptome.gdc_realn.bam 13224813437 BAM transcriptome harmonized CPTAC3 55be32c8-1226-4687-aa83-b45c3ee263f0 c29651b9e6c5f0871279256ef4783833 {"aliquot_tag": "ALQ_f144ca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.RNA-Seq.transcriptome.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.transcriptome.gdc_realn.bam 5730478956 BAM transcriptome harmonized CPTAC3 335a15c1-eee8-4b2b-821a-7844d4cc1781 edec900ff65ac7db32d0348142699f31 {"aliquot_tag": "ALQ_f17b21d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.WGS.N C3L-00032 UCEC WGS blood_normal CPT0000110163 CPT0000110163.WholeGenome.RP-1303.bam 126838678733 BAM submitted_aligned CPTAC3 27091176-c4d5-46a5-816c-ef22cf26f96c e4cfad074a9219c667a370468f9d82f8 {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00032.WGS.N.hg38 C3L-00032 UCEC WGS blood_normal CPT0000110163 97e153c1-7be4-4d7b-9d30-9545b56e6ddb_gdc_realn.bam 185157776977 BAM harmonized CPTAC3 a16b07d8-46c1-4fd9-8204-4f866aacfbec 70e523db56d68067e75bd952f710ce36 {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00032.WGS.T C3L-00032 UCEC WGS tumor CPT0001420005 CPT0001420005.WholeGenome.RP-1303.bam 131629095092 BAM submitted_aligned CPTAC3 4b7eee33-2cb9-4c54-b5e7-f8f72536f062 d7af1c291d9eb90b2644aaaa479dae48 {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.WGS.T.hg38 C3L-00032 UCEC WGS tumor CPT0001420005 9de43644-2816-4fac-8e1e-b49b18b2707b_gdc_realn.bam 188785671244 BAM harmonized CPTAC3 b93693c0-b88d-43d6-9b8b-97c8269982cc 17b88d6287bea206be2d60692d0e86af {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.WXS.N C3L-00032 UCEC WXS blood_normal CPT0000110163 CPT0000110163.WholeExome.RP-1303.bam 32387333790 BAM submitted_aligned CPTAC3 14ff5c48-84a3-4fb3-8d43-f148bf19c91a 4f84a2d8ce7c4ed9fb38fd80623a4a6c {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00032.WXS.N.hg38 C3L-00032 UCEC WXS blood_normal CPT0000110163 97e153c1-7be4-4d7b-9d30-9545b56e6ddb_gdc_realn.bam 45654381681 BAM harmonized CPTAC3 75a4369c-5247-427d-aabc-3157d08f2d8f 761727d7520f0b73f4b8b0d01a0c296b {"aliquot_tag": "ALQ_206a39d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00032.WXS.T C3L-00032 UCEC WXS tumor CPT0001420005 CPT0001420005.WholeExome.RP-1303.bam 46342883255 BAM submitted_aligned CPTAC3 f7c2228a-b4cd-42b4-b355-ce777d9c54be 68bf557a79c352d2e9abad110062138e {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00032.WXS.T.hg38 C3L-00032 UCEC WXS tumor CPT0001420005 9de43644-2816-4fac-8e1e-b49b18b2707b_gdc_realn.bam 63526051521 BAM harmonized CPTAC3 0ec56b8f-f64a-401e-be41-d873fa31776b 51e29eea221dd4ae2b55694033cde9dc {"aliquot_tag": "ALQ_2f8bb180", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00035.MethArray.Green.T C3L-00035 SAR Methylation_Array tumor CPT0001100005 202178770006_R06C01_Grn.idat 13676240 IDAT Green NA CPTAC3 2f216082-cd76-489b-a5c8-c26cd5f66979 94ca3ff833b189323aeb9d7e5911a3ff {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.MethArray.Red.T C3L-00035 SAR Methylation_Array tumor CPT0001100005 202178770006_R06C01_Red.idat 13676240 IDAT Red NA CPTAC3 104c301d-4d22-4f0a-8b85-d384651f31e9 86b829a4f61099ed41e01b8b43ac9dfe {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.miRNA-Seq.A.hg38 C3L-00035 SAR miRNA-Seq tissue_normal CPT0001110006 2eb73a27-f6b8-4f65-a2b5-b16d7924a1d0_mirnaseq_gdc_realn.bam 395686770 BAM harmonized CPTAC3 cdc020a9-c7d3-4c69-b64f-872485f411e2 8ae9dc7bf70db994a1b4a1da31dcd1f8 {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.miRNA-Seq.S26_L006_R1.A C3L-00035 SAR miRNA-Seq tissue_normal CPT0001110006 181113_UNC31-K00269_0164_AH23NNBBXY_CGATGT_S26_L006_R1_001.unaln.bam 342186576 BAM S26_L006_R1 submitted_unaligned CPTAC3 cd4a7809-05fa-42eb-b810-6290997b59e8 5cf9801cd9546806c56bd04cba14ea8b {"aliquot_tag": "ALQ_a1ef0b59", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.miRNA-Seq.S5_L001_R1.T C3L-00035 SAR miRNA-Seq tumor CPT0001100164 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L001_R1_001.unaln.bam 219852901 BAM S5_L001_R1 submitted_unaligned CPTAC3 60908000-3d5c-4a19-b2cb-8bf29dfda9f3 9f2bdffa360ea2fb826f066e7870dd13 {"aliquot_tag": "ALQ_25198e74", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.miRNA-Seq.T.hg38 C3L-00035 SAR miRNA-Seq tumor CPT0001100164 de1398ba-55b8-4db1-8b25-b16550168058_mirnaseq_gdc_realn.bam 241476818 BAM harmonized CPTAC3 6815f7be-12b8-4bbd-a2b3-5629764cc8b8 379fd4a8f12998801cc5103c2f5d46df {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.RNA-Seq.chimeric.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.chimeric.gdc_realn.bam 53495188 BAM chimeric harmonized CPTAC3 c1b80a3a-f004-4f8b-ab2d-c1951bc89c06 89e294c3aaf17caad82ce99f51eaaa2f {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.RNA-Seq.chimeric.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.chimeric.gdc_realn.bam 88862855 BAM chimeric harmonized CPTAC3 f9ce9f83-d141-485a-8eb1-c18c84ee815d 6c5d1e35a6dbcacdd34bb0738ba7a7fe {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.RNA-Seq.genomic.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.genomic.gdc_realn.bam 9453697706 BAM genomic harmonized CPTAC3 34b695d6-3877-4fb0-a8d9-0bec90b82667 3811cae77fa9086429b0d5b6049c8275 {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.RNA-Seq.genomic.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.genomic.gdc_realn.bam 8620653265 BAM genomic harmonized CPTAC3 458ffbe0-84b0-45bb-93a3-38832937e064 823f5edc397da0a11a20e14d5987c679 {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.RNA-Seq.S13_L004_R1.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R1_001.fastq.gz 4056843805 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 cbda050b-36e2-456a-a463-18a053c72b35 7ec3ebe7703206ed61cc502024c4a55f {"aliquot_tag": "ALQ_25198e74", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.RNA-Seq.S13_L004_R2.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R2_001.fastq.gz 4458423808 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 49de624d-41e8-48fc-a604-13c0567799af 1564c0e58f06407845e9b1a52caf93e7 {"aliquot_tag": "ALQ_25198e74", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.RNA-Seq.S2_L007_R1.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4378527741 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 b0438f96-71ec-49c0-9969-068f201232b0 9f0f748a7f55049d9b9621b38c7eaa0b {"aliquot_tag": "ALQ_a1ef0b59", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.RNA-Seq.S2_L007_R2.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4714952191 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 177c4c24-764b-42ee-9af8-6ec5825562f4 00372e7ed0a1b41176a2f06a62023eae {"aliquot_tag": "ALQ_a1ef0b59", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.RNA-Seq.transcriptome.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.transcriptome.gdc_realn.bam 11367309490 BAM transcriptome harmonized CPTAC3 b34e0f4e-7283-4120-83a6-0b3dd824f6aa e7fa11f0e5ab6257193ee925a2b35894 {"aliquot_tag": "ALQ_a1ef0b59", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.RNA-Seq.transcriptome.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.transcriptome.gdc_realn.bam 10483984278 BAM transcriptome harmonized CPTAC3 fae81c19-860c-4f28-a876-c7b72ad8f1ec 42abe89025173286b7ac40b11eeb391d {"aliquot_tag": "ALQ_25198e74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.WGS.A C3L-00035 SAR WGS tissue_normal CPT0001110009 CPT0001110009.WholeGenome.RP-1303.bam 60212243664 BAM submitted_aligned CPTAC3 3628cafc-ce00-40c1-a364-3f1a8ca449e7 e5a4d13d9e2f7dbdf5fcdf4e468538eb {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.WGS.A.hg38 C3L-00035 SAR WGS tissue_normal CPT0001110009 5b4f85ae-83e1-4911-b8a6-4dc07423dc41_wgs_gdc_realn.bam 87903887799 BAM harmonized CPTAC3 311a7aa0-a35f-4601-a6b7-cd1be6936913 90b8caa080ff1068f12d664328604528 {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.WGS.N C3L-00035 SAR WGS blood_normal CPT0000030163 CPT0000030163.WholeGenome.RP-1303.bam 84386892225 BAM submitted_aligned CPTAC3 a39fa45b-2a0a-4a0b-8157-42169bd6dfac 23ced97a5fa0b46043f1a71bc4fbe723 {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00035.WGS.N.hg38 C3L-00035 SAR WGS blood_normal CPT0000030163 4a5f302d-91e4-4652-acc3-f1d2e91446f0_gdc_realn.bam 126458038925 BAM harmonized CPTAC3 ae05a1de-b7d2-4e11-90eb-865b31f0bf19 e156dda675085f628aed8cc6e26a06fc {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00035.WGS.T C3L-00035 SAR WGS tumor CPT0001100005 CPT0001100005.WholeGenome.RP-1303.bam 68547475756 BAM submitted_aligned CPTAC3 f480b9ef-eedb-4955-bc97-d501681ab619 7554270dc9a3d4238078118d43d26f4d {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.WGS.T.hg38 C3L-00035 SAR WGS tumor CPT0001100005 ecad9357-04fa-473b-8a2e-65e183eb563e_gdc_realn.bam 102791396309 BAM harmonized CPTAC3 fccd40e0-f494-4d8e-a217-72e3a1dcdc5a 9e9760b6ebfb91eb09811a36c085ba26 {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.WXS.A C3L-00035 SAR WXS tissue_normal CPT0001110009 CPT0001110009.WholeExome.RP-1303.bam 33047547449 BAM submitted_aligned CPTAC3 f68ecf94-47a1-462a-b879-2ac334852cf4 c05942f2ffe95e94d72ab9c1c5c8dfd2 {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.WXS.A.hg38 C3L-00035 SAR WXS tissue_normal CPT0001110009 5b4f85ae-83e1-4911-b8a6-4dc07423dc41_wxs_gdc_realn.bam 43913167176 BAM harmonized CPTAC3 902c210f-e23e-4e2c-a03a-871f19dff855 d8694ddfd7181a7432aebc3540ae36a3 {"aliquot_tag": "ALQ_315016c8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00035.WXS.N C3L-00035 SAR WXS blood_normal CPT0000030163 CPT0000030163.WholeExome.RP-1303.bam 35926138813 BAM submitted_aligned CPTAC3 b694d42b-97f9-4cf3-95d1-f36b5e23ae44 94dda723d32f15aefb3b255d6cd1642e {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00035.WXS.N.hg38 C3L-00035 SAR WXS blood_normal CPT0000030163 4a5f302d-91e4-4652-acc3-f1d2e91446f0_gdc_realn.bam 49188054090 BAM harmonized CPTAC3 4afa74ce-f112-4dee-b0c6-340b2db90ec5 1f19979abb8d092a70499fd2a7d13618 {"aliquot_tag": "ALQ_91f6b916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00035.WXS.T C3L-00035 SAR WXS tumor CPT0001100005 CPT0001100005.WholeExome.RP-1303.bam 30942428083 BAM submitted_aligned CPTAC3 46cedf30-7d2d-4fe7-8c20-8b9ae74adf22 8d71a7fef3e81d9e9552975f259f99be {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00035.WXS.T.hg38 C3L-00035 SAR WXS tumor CPT0001100005 ecad9357-04fa-473b-8a2e-65e183eb563e_gdc_realn.bam 42787684371 BAM harmonized CPTAC3 3247a52c-2fe8-4c8d-b771-512adaf30cde c893823b5d36ea8e8ae302c0bd3f4851 {"aliquot_tag": "ALQ_5867353", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00079.MethArray.Green.A C3L-00079 CCRCC Methylation_Array tissue_normal CPT0001270014 204930630111_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1d4e92db-c33f-48ab-a854-d098c8b671a3 62886a81fe4541f18dab77fc0e4f5ef3 {"aliquot_tag": "ALQ_5f2edc3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.MethArray.Green.T C3L-00079 CCRCC Methylation_Array tumor CPT0001260005 201557560005_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0b4a56dd-b0dd-4fad-b4ff-0867fecac221 d2fd093f216110763e20c259b0066dfe {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.MethArray.Red.A C3L-00079 CCRCC Methylation_Array tissue_normal CPT0001270014 204930630111_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 d9f86ecd-c600-45ae-88b1-48bd6d48f4f8 258bef0a9b077698d2e63a9cd0c4c1f2 {"aliquot_tag": "ALQ_5f2edc3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.MethArray.Red.T C3L-00079 CCRCC Methylation_Array tumor CPT0001260005 201557560005_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 032603a3-4277-4b1f-88e3-433662c1afc4 f5e8a394dc258c6d1f9bae4943ef75c2 {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.miRNA-Seq.A.hg38 C3L-00079 CCRCC miRNA-Seq tissue_normal CPT0001270006 52937cb2-3c89-467e-9e4e-d8116146ff68_mirnaseq_gdc_realn.bam 211094160 BAM harmonized CPTAC3 78b59dd9-1c94-47f2-92dd-e7e92d8bfa26 d6d653d1e6bb64e3baacc5856253af1e {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.miRNA-Seq.S25_L004_R1.T C3L-00079 CCRCC miRNA-Seq tumor CPT0001260164 181113_UNC31-K00269_0164_AH23NNBBXY_ATCACG_S25_L004_R1_001.unaln.bam 174116959 BAM S25_L004_R1 submitted_unaligned CPTAC3 d5be5a79-be6c-4ae5-9f79-14a6d2a7ceaf b70f2df193b70bfda1cde324dfcebb8e {"aliquot_tag": "ALQ_2ccd097a", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.miRNA-Seq.S26_L004_R1.A C3L-00079 CCRCC miRNA-Seq tissue_normal CPT0001270006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L004_R1_001.unaln.bam 191504250 BAM S26_L004_R1 submitted_unaligned CPTAC3 f8468f33-edb8-4f0e-b9de-c5db1b338e80 b089d4769ecde0fbbe86ebde913fdfbe {"aliquot_tag": "ALQ_a83b8c57", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.miRNA-Seq.T.hg38 C3L-00079 CCRCC miRNA-Seq tumor CPT0001260164 98367696-9771-4a1d-af62-4e7bbe356ce8_mirnaseq_gdc_realn.bam 194675344 BAM harmonized CPTAC3 41838880-d581-443f-afb8-f8e0a7e7c81f 0a51cc6211f35a98d0dbb131d1f2f177 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.RNA-Seq.chimeric.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.chimeric.gdc_realn.bam 70075995 BAM chimeric harmonized CPTAC3 885db1d9-b636-4882-96cd-c41a503885fb 48508146230988713244d1894733fce8 {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.RNA-Seq.chimeric.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.chimeric.gdc_realn.bam 227050579 BAM chimeric harmonized CPTAC3 38c7bb30-383e-4103-b93b-5ce4161b0950 edf3fba316a8c971d97a8335424273f0 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.RNA-Seq.genomic.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.genomic.gdc_realn.bam 7938074317 BAM genomic harmonized CPTAC3 ef4131fa-9339-445d-89b8-2233f29252d9 1a4fc065ec2ab1f4487a49e8f7bf24f6 {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.RNA-Seq.genomic.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.genomic.gdc_realn.bam 7790430116 BAM genomic harmonized CPTAC3 3a7f21e6-a20c-4541-b7ef-dbd16a17a092 e5a7476bea5e23427b20d2ac8f701dc2 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.RNA-Seq.S24_L007_R1.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R1_001.fastq.gz 3940760935 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 e328d98d-fa50-475e-a1b0-b9df37891c4e ff6181d9102864bf12b78a67c03570a3 {"aliquot_tag": "ALQ_2ccd097a", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.RNA-Seq.S24_L007_R2.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R2_001.fastq.gz 4337346188 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 8dc8eb7a-c5f2-4bfd-a190-d62f38d82ada 2680b3778eaad97464eda1a61a1ae574 {"aliquot_tag": "ALQ_2ccd097a", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.RNA-Seq.S60_L008_R1.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R1_001.fastq.gz 3853474075 FASTQ S60_L008_R1 submitted_unaligned CPTAC3 90767875-a3ca-41b8-9528-a9728f3ca8ec cbcb67e23abbe576ddb4757922ae47cd {"aliquot_tag": "ALQ_a83b8c57", "sample": "S60", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.RNA-Seq.S60_L008_R2.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R2_001.fastq.gz 4192267366 FASTQ S60_L008_R2 submitted_unaligned CPTAC3 28d7f941-8d68-4955-a8ef-0a0d9c2b67ac cbac527244e14a14bb0ae30a07c52c19 {"aliquot_tag": "ALQ_a83b8c57", "sample": "S60", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.RNA-Seq.transcriptome.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.transcriptome.gdc_realn.bam 10037580390 BAM transcriptome harmonized CPTAC3 321d038f-86b1-4899-b168-80121e52a8c9 d683745c677a12cd61bc7210ff905ecf {"aliquot_tag": "ALQ_a83b8c57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.RNA-Seq.transcriptome.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.transcriptome.gdc_realn.bam 11312942767 BAM transcriptome harmonized CPTAC3 d130ff4e-24f5-4fac-b5aa-622de9aa6e43 f366d5a534f5c57ca58bf43ccbbaeee1 {"aliquot_tag": "ALQ_2ccd097a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.scRNA-Seq.S4_L004_R1.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+GAATGTTGTG_S4_L004_R1_001.fastq.gz 2444698172 FASTQ S4_L004_R1 submitted_unaligned CPTAC3 04cb9c3e-86fd-4699-aac6-b932a07b84fa f6e9b5312f168f441d86389ec46b57c6 {"aliquot_tag": "ALQ_624ef58a", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00079.scRNA-Seq.S4_L004_R2.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+GAATGTTGTG_S4_L004_R2_001.fastq.gz 8830325502 FASTQ S4_L004_R2 submitted_unaligned CPTAC3 c3a6d4d8-8bb1-4e88-b395-a099c9459783 6990d3f2551533a3f23d9ff5a8f9cd48 {"aliquot_tag": "ALQ_624ef58a", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00079.scRNA-Seq.S5_L004_R1.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+CACAACATTC_S5_L004_R1_001.fastq.gz 3290649461 FASTQ S5_L004_R1 submitted_unaligned CPTAC3 0c29f30c-1684-4639-a8a8-a138423d17ba 5af6dd1a8d37ffe75ff759aa57b73d30 {"aliquot_tag": "ALQ_624ef58a", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00079.scRNA-Seq.S5_L004_R2.T C3L-00079 CCRCC scRNA-Seq tumor CPT0001260014 20220404_WUSTL_TWHG-CPT0001260014-Y1N1Z1_1Bmn1_1_ATGGCTTGTG+CACAACATTC_S5_L004_R2_001.fastq.gz 11874489370 FASTQ S5_L004_R2 submitted_unaligned CPTAC3 0de46f5a-2c28-4451-b953-e8c06549aebd 0cabc36ed002a34925b3d48c1e24f6f0 {"aliquot_tag": "ALQ_624ef58a", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00079.WGS.A C3L-00079 CCRCC WGS tissue_normal CPT0001270009 CPT0001270009.WholeGenome.RP-1303.bam 54535504797 BAM submitted_aligned CPTAC3 fda8e552-9732-45cc-8c81-51ea6dceab92 c68d57c401181279f045ca0f33f137ac {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.WGS.A.hg38 C3L-00079 CCRCC WGS tissue_normal CPT0001270009 66a0c38b-0783-488a-946b-85127b719408_wgs_gdc_realn.bam 80842969899 BAM harmonized CPTAC3 f27a1987-e3ff-4f15-90bd-2c5054b92f62 4cb8ab424ad7641556b52924d50c485b {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.WGS.N C3L-00079 CCRCC WGS blood_normal CPT0000070163 CPT0000070163.WholeGenome.RP-1303.bam 102959018874 BAM submitted_aligned CPTAC3 089f0221-be6c-4088-9ec9-945b2282cee9 39d1734d63694fa4aa5fd95461862440 {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00079.WGS.N.hg38 C3L-00079 CCRCC WGS blood_normal CPT0000070163 86c228d6-3005-46fd-937d-5a773191167e_gdc_realn.bam 150268708302 BAM harmonized CPTAC3 3eb84438-8a49-4386-804e-7a32c10e9eb0 69b70b1c04b88adec9096e91df5d639e {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00079.WGS.T C3L-00079 CCRCC WGS tumor CPT0001260005 CPT0001260005.WholeGenome.RP-1303.bam 124778911717 BAM submitted_aligned CPTAC3 7a798aa2-c28a-4ae8-8e25-f17d7405dbd2 4e8fe78db27a2f6c542b4ad446f88e12 {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.WGS.T.hg38 C3L-00079 CCRCC WGS tumor CPT0001260005 edc8a006-f1d6-44c5-a097-02792f48391c_gdc_realn.bam 180750058537 BAM harmonized CPTAC3 abac465f-b18f-4fb0-b967-adfcc6bf17c1 d3bc48c4e802f3bebd906afd34f4968e {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.WXS.A C3L-00079 CCRCC WXS tissue_normal CPT0001270009 CPT0001270009.WholeExome.RP-1303.bam 32113812283 BAM submitted_aligned CPTAC3 4ec5115c-c33f-4fbd-b0cc-042fdf796b9b 29d603066e771083d5f9fc72698f1389 {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.WXS.A.hg38 C3L-00079 CCRCC WXS tissue_normal CPT0001270009 66a0c38b-0783-488a-946b-85127b719408_wxs_gdc_realn.bam 43433999078 BAM harmonized CPTAC3 cb58ee45-9b1e-44f0-9b4e-da652894e14d 6faef8605f0c5a1a5f6779013713c20e {"aliquot_tag": "ALQ_388491c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00079.WXS.N C3L-00079 CCRCC WXS blood_normal CPT0000070163 CPT0000070163.WholeExome.RP-1303.bam 34065306969 BAM submitted_aligned CPTAC3 265ae531-f831-4540-88cb-42cc26395260 3886f3aead80b7206bd7b38d33e17a8d {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00079.WXS.N.hg38 C3L-00079 CCRCC WXS blood_normal CPT0000070163 86c228d6-3005-46fd-937d-5a773191167e_gdc_realn.bam 48126576471 BAM harmonized CPTAC3 619c5835-bcd0-48e0-9b4c-742a607382e9 e26130b6e605bd8b56172cef855e2152 {"aliquot_tag": "ALQ_64761fd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00079.WXS.T C3L-00079 CCRCC WXS tumor CPT0001260005 CPT0001260005.WholeExome.RP-1303.bam 30057980227 BAM submitted_aligned CPTAC3 45d5dac7-ff6a-42f1-92a2-9521a4fad790 0d2c936fb05073b1903a7a85f25c3942 {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00079.WXS.T.hg38 C3L-00079 CCRCC WXS tumor CPT0001260005 edc8a006-f1d6-44c5-a097-02792f48391c_gdc_realn.bam 40786462717 BAM harmonized CPTAC3 a0b56912-d3f5-43c6-b105-47fb7e936580 b0f5b783cdcaf5764b66e86f56d7a92f {"aliquot_tag": "ALQ_c52f45d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.MethArray.Green.A C3L-00080 LUAD Methylation_Array tissue_normal CPT0001070009 203027390091_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e8daa52-8fea-4ab4-bb04-a372c5aa7151 c9e5c55c4a73d56fd400cb826269a433 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.MethArray.Green.T C3L-00080 LUAD Methylation_Array tumor CPT0001060005 201557560050_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 729981ed-3612-4da1-9f2a-b22b87ccb154 49d69501552c3e0cf6e3128aa4e79ed5 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.MethArray.Red.A C3L-00080 LUAD Methylation_Array tissue_normal CPT0001070009 203027390091_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 dfadb10b-f081-4e37-8d95-24a1131c22d0 4ff2dd332795ee7dbd2ce16dc57f496c {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.MethArray.Red.T C3L-00080 LUAD Methylation_Array tumor CPT0001060005 201557560050_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 2241c633-bcc6-45a4-b7c7-c35b57b81481 c33015317b967b3fc9ddcf92786f1d11 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.miRNA-Seq.A.hg38 C3L-00080 LUAD miRNA-Seq tissue_normal CPT0001070006 05107a4e-d208-4225-b989-59483fb418e5_mirnaseq_gdc_realn.bam 176936079 BAM harmonized CPTAC3 2a856858-385a-42fa-8b28-a476db62ef7e 1c4b6fd76599d25676268013a6eef49a {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.miRNA-Seq.S26_L004_R1.T C3L-00080 LUAD miRNA-Seq tumor CPT0001060164 181113_UNC31-K00269_0164_AH23NNBBXY_CGATGT_S26_L004_R1_001.unaln.bam 283629343 BAM S26_L004_R1 submitted_unaligned CPTAC3 a46a435b-8cab-46cc-bec5-ae1b68151577 b09195618085737bcd3f1a685f40bac3 {"aliquot_tag": "ALQ_6105a871", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.miRNA-Seq.S48_L002_R1.A C3L-00080 LUAD miRNA-Seq tissue_normal CPT0001070006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGGCA_S48_L002_R1_001.unaln.bam 158219058 BAM S48_L002_R1 submitted_unaligned CPTAC3 50568e06-a30e-4e0f-b4c5-b02f3e8cd8bf 4d1066462c69e5b55733b2a5c3e87717 {"aliquot_tag": "ALQ_e5f32d5c", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.miRNA-Seq.T.hg38 C3L-00080 LUAD miRNA-Seq tumor CPT0001060164 d06c2bcf-456a-4837-abe8-82c5ac7813cb_mirnaseq_gdc_realn.bam 307074111 BAM harmonized CPTAC3 fd9fc68c-db05-4978-914c-6b983431f86e 0c25309ef384afd393fff6e6f0cda22f {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.RNA-Seq.chimeric.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.chimeric.gdc_realn.bam 47170794 BAM chimeric harmonized CPTAC3 320a1fa4-0064-4823-a65e-a05e9effa70e 2f23ca9eaa4bd31d532b54314298ab86 {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.RNA-Seq.chimeric.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.chimeric.gdc_realn.bam 101277625 BAM chimeric harmonized CPTAC3 626bb6d6-0208-4320-862d-c7f3255659c9 274e0088acbbd88c247997d9c966d7d3 {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.RNA-Seq.genomic.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.genomic.gdc_realn.bam 7880695095 BAM genomic harmonized CPTAC3 0862eb68-daeb-4f61-8eb2-b41a8a99d0ef 5f9a08e9e64e342fcc9b12e146a1cbf5 {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.RNA-Seq.genomic.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.genomic.gdc_realn.bam 8365092954 BAM genomic harmonized CPTAC3 5cb3859a-bcd6-42f9-b243-c4987a9d5425 f4ce533c16f1dbcd799a068713227b36 {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.RNA-Seq.S8_L003_R1.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R1_001.fastq.gz 3788888230 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 e3b3eb09-d63a-405e-a75c-3f702efa99b5 8adc24bb5a64f3f5cca5a4087d7412b6 {"aliquot_tag": "ALQ_e5f32d5c", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.RNA-Seq.S8_L003_R2.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R2_001.fastq.gz 3994850528 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 24c67435-65d7-40b6-9797-98c2cff545a8 9a10a3a59aa4d54b7f007e8703f378f4 {"aliquot_tag": "ALQ_e5f32d5c", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.RNA-Seq.S9_L003_R1.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R1_001.fastq.gz 3470721198 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 5f907873-df4e-4a39-8a9d-93ac9dc6b092 94d499e0aab28e26d1086b484ac95020 {"aliquot_tag": "ALQ_6105a871", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.RNA-Seq.S9_L003_R2.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R2_001.fastq.gz 3858897033 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 8e3ee723-f497-403e-bdef-b8740041fcb2 f7c97492250d184db634ccfdb63368f0 {"aliquot_tag": "ALQ_6105a871", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.RNA-Seq.transcriptome.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.transcriptome.gdc_realn.bam 9682153173 BAM transcriptome harmonized CPTAC3 a9798e6c-60e3-4eda-8b64-705e4662a6e5 361a906340bbba92d9614aa8909eb8be {"aliquot_tag": "ALQ_e5f32d5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.RNA-Seq.transcriptome.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.transcriptome.gdc_realn.bam 8178279137 BAM transcriptome harmonized CPTAC3 52ddd213-2ad9-452f-b7c2-4065c106c94c 6cb015c120ed9e368216fff57ae33368 {"aliquot_tag": "ALQ_6105a871", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.WGS.A C3L-00080 LUAD WGS tissue_normal CPT0001070009 CPT0001070009.WholeGenome.RP-1303.bam 81206900517 BAM submitted_aligned CPTAC3 081a8d4d-792e-4a5b-af7a-8bd1d2e0963d afaea3669492bd7548772a2257c2a672 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.WGS.A.hg38 C3L-00080 LUAD WGS tissue_normal CPT0001070009 367111cb-498a-48db-8c12-5fb198c1f435_wgs_gdc_realn.bam 119427123874 BAM harmonized CPTAC3 39a75785-7d97-4ddc-9b7e-1b847d72e8e3 9af0c03f17216eb4979f84bfaad0ae88 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.WGS.N C3L-00080 LUAD WGS blood_normal CPT0000020163 CPT0000020163.WholeGenome.RP-1303.bam 136776714049 BAM submitted_aligned CPTAC3 31525b12-5d4d-40a2-a544-5e66ecc5a842 b9087d8cf3e0e3a41b22af3a86612d3b {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00080.WGS.N.hg38 C3L-00080 LUAD WGS blood_normal CPT0000020163 0884b190-2818-4687-9507-a6f34883c932_gdc_realn.bam 200634122075 BAM harmonized CPTAC3 9b0719f5-2549-466c-892c-df316fff7fe0 3c454203cd1b698fb4884af99f696ff4 {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00080.WGS.T C3L-00080 LUAD WGS tumor CPT0001060005 CPT0001060005.WholeGenome.RP-1303.bam 151394529400 BAM submitted_aligned CPTAC3 09c1eda8-63d4-4661-9b58-73b4a5115d0a e0b646ef749439aaaf8142993c505d9e {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.WGS.T.hg38 C3L-00080 LUAD WGS tumor CPT0001060005 402105a0-263d-474b-b32d-11a7ad92150f_gdc_realn.bam 217796501697 BAM harmonized CPTAC3 7b17e10f-1802-41a3-9d39-98d7f4f7ab40 8905b1a0a0723c234ae09de2cc0f0b23 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.WXS.A C3L-00080 LUAD WXS tissue_normal CPT0001070009 CPT0001070009.WholeExome.RP-1303.bam 38874016782 BAM submitted_aligned CPTAC3 914fe34c-9b40-45e0-9cf5-3aadc855e414 44ef2fe8ba3595d2cb7023f642d3754b {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.WXS.A.hg38 C3L-00080 LUAD WXS tissue_normal CPT0001070009 367111cb-498a-48db-8c12-5fb198c1f435_wxs_gdc_realn.bam 52841811322 BAM harmonized CPTAC3 b368558a-16fa-471a-8260-ec289700b984 25fb56e520438fb6004f8ebd70484095 {"aliquot_tag": "ALQ_754c30cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00080.WXS.N C3L-00080 LUAD WXS blood_normal CPT0000020163 CPT0000020163.WholeExome.RP-1303.bam 32862065320 BAM submitted_aligned CPTAC3 65d0559a-983e-4e87-a69d-d62cfac912c0 913df0d6546cddfcc02210a89c98809e {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00080.WXS.N.hg38 C3L-00080 LUAD WXS blood_normal CPT0000020163 0884b190-2818-4687-9507-a6f34883c932_gdc_realn.bam 47252445993 BAM harmonized CPTAC3 9412b5eb-4f3d-4c16-9901-fac1b339da5f 4097cdad785c1d1d39fa282ea924a79a {"aliquot_tag": "ALQ_ac9690a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00080.WXS.T C3L-00080 LUAD WXS tumor CPT0001060005 CPT0001060005.WholeExome.RP-1303.bam 35658339910 BAM submitted_aligned CPTAC3 7acc6d0a-8ba6-442b-9f43-001038cc8bd9 bcefb326dc0d016f3a528d3a0cc2f7a5 {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00080.WXS.T.hg38 C3L-00080 LUAD WXS tumor CPT0001060005 402105a0-263d-474b-b32d-11a7ad92150f_gdc_realn.bam 49069409933 BAM harmonized CPTAC3 af55e269-a75d-4392-9d5d-96faf2c0e04e 3c0b06c3a98766b4772126c864d25cda {"aliquot_tag": "ALQ_419a5556", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.MethArray.Green.A C3L-00081 LSCC Methylation_Array tissue_normal CPT0001030006 203219650157_R02C01_Grn.idat 13676223 IDAT Green NA CPTAC3 fe9c627b-314b-490a-991b-0d6375d7cbd6 921769b8ff67dca61223061a8e644253 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.MethArray.Green.T C3L-00081 LSCC Methylation_Array tumor CPT0001020005 201557560049_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 357449ad-f612-4325-beae-8a1427c252f8 d255a747dfb693cb2ab877b9c8f58a56 {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.MethArray.Red.A C3L-00081 LSCC Methylation_Array tissue_normal CPT0001030006 203219650157_R02C01_Red.idat 13676223 IDAT Red NA CPTAC3 78941176-9350-4b80-8dee-0c58a5cbd65b cfcfb5dabefe5d17802e5a0fc8cd83f4 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.MethArray.Red.T C3L-00081 LSCC Methylation_Array tumor CPT0001020005 201557560049_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 377de132-5df6-4bb3-aa26-334f984beb9c 562f3d069e3da47b711004b9e3997ce4 {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.miRNA-Seq.A.hg38 C3L-00081 LSCC miRNA-Seq tissue_normal CPT0001030009 ed82f2d1-eec1-4b9c-b734-bbdd0269b5c2_mirnaseq_gdc_realn.bam 217130182 BAM harmonized CPTAC3 5b303069-5a95-4cf0-a3c5-72405d286f8f 11d69d42b04fd40edcab4786d82f86d2 {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.miRNA-Seq.S36_L006_R1.A C3L-00081 LSCC miRNA-Seq tissue_normal CPT0001030009 181113_UNC31-K00269_0164_AH23NNBBXY_CTTGTA_S36_L006_R1_001.unaln.bam 189354960 BAM S36_L006_R1 submitted_unaligned CPTAC3 b37bf8e5-f653-4fd7-a5d7-26c8ec5b8cb1 b59441eb7925fc4829dae656742394ab {"aliquot_tag": "ALQ_80cc960d", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.miRNA-Seq.S4_L005_R1.T C3L-00081 LSCC miRNA-Seq tumor CPT0001020164 181119_UNC31-K00269_0165_AH27WCBBXY_CAAAAG_S4_L005_R1_001.unaln.bam 243860495 BAM S4_L005_R1 submitted_unaligned CPTAC3 bdff1579-a29f-4d82-829a-11008222efde 1ccf5244604c2c5c93965d280e79f610 {"aliquot_tag": "ALQ_94850eb1", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.miRNA-Seq.T.hg38 C3L-00081 LSCC miRNA-Seq tumor CPT0001020164 fab1e2b2-6cdf-4c57-bcb5-a471707cded4_mirnaseq_gdc_realn.bam 264975107 BAM harmonized CPTAC3 4e533072-0f76-49f6-a9a7-35cc549f3b2a 7c7f0b5382e9b99f5c374dad5ad398c4 {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.RNA-Seq.chimeric.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.chimeric.gdc_realn.bam 40154720 BAM chimeric harmonized CPTAC3 e2497a1b-9ce0-437a-af72-5931bf3365a0 fd59a502b286a5cc1ed424af706a0e0d {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.RNA-Seq.chimeric.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.chimeric.gdc_realn.bam 90588319 BAM chimeric harmonized CPTAC3 fef44227-e37d-4475-9f7e-9b9d1f67a959 1eec1a997cfd8db67d2cf92e8d9af339 {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.RNA-Seq.genomic.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.genomic.gdc_realn.bam 7538796519 BAM genomic harmonized CPTAC3 dc3b683c-5afe-48e8-bc0d-2db0168438b1 9ae288caa90b448ca5f4f9078b6b3791 {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.RNA-Seq.genomic.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.genomic.gdc_realn.bam 8439583099 BAM genomic harmonized CPTAC3 07efac59-ec65-41cc-91de-de2db3e51c95 59f694ee679475388d00345d8bb38d31 {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.RNA-Seq.S11_L003_R1.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R1_001.fastq.gz 3939456591 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 3421ad64-9741-4c1a-8566-1ed87be793ed 9208224ed41c98ee20b39ca69eaaf50b {"aliquot_tag": "ALQ_94850eb1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.RNA-Seq.S11_L003_R2.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R2_001.fastq.gz 4356640891 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 5bbe2459-83d0-4ec4-af3d-349c07dd3ef6 fd7b61a3b8f36f69582676b21d4b1df6 {"aliquot_tag": "ALQ_94850eb1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.RNA-Seq.S20_L005_R1.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3654893099 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 c6af85e7-26e8-4b47-b8af-dde2bec71986 fa7b748c426c7c571a2b2680d9a99a90 {"aliquot_tag": "ALQ_80cc960d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.RNA-Seq.S20_L005_R2.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3975945919 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 baa8c044-0465-4621-ad86-59a7fc812b9f 32105850f51c90749cdfe503156e32d7 {"aliquot_tag": "ALQ_80cc960d", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.RNA-Seq.transcriptome.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.transcriptome.gdc_realn.bam 9853763645 BAM transcriptome harmonized CPTAC3 0e640400-21fb-421d-895e-29167dae72ca 3315fcafdff0a40df0dd5cc65bfe51f0 {"aliquot_tag": "ALQ_80cc960d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.RNA-Seq.transcriptome.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.transcriptome.gdc_realn.bam 11092790707 BAM transcriptome harmonized CPTAC3 ebf3c06f-092e-465e-9f47-5a20dc208640 11fe9019b59a6bcfe595434af0db72fb {"aliquot_tag": "ALQ_94850eb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.WGS.A C3L-00081 LSCC WGS tissue_normal CPT0001030006 CPT0001030006.WholeGenome.RP-1303.bam 62530201240 BAM submitted_aligned CPTAC3 fd9c0561-e0b3-40c7-9adc-47a733e3e602 f2c086f7bf42366b2592b7a3490f2583 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.WGS.A.hg38 C3L-00081 LSCC WGS tissue_normal CPT0001030006 48433c5e-7746-4ae8-888a-3c9390b460d4_wgs_gdc_realn.bam 91867368039 BAM harmonized CPTAC3 c7de8530-f1ff-412e-8553-2f44dec09d49 c5c7a6c15cb28a25e8ce326b2d83ceb6 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.WGS.N C3L-00081 LSCC WGS blood_normal CPT0000010163 CPT0000010163.WholeGenome.RP-1303.bam 131968017841 BAM submitted_aligned CPTAC3 129e9b57-07c7-46d2-bc85-a33e58416247 f7f67b09904671f331e3168baac99093 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00081.WGS.N.hg38 C3L-00081 LSCC WGS blood_normal CPT0000010163 5e04faec-58e8-403f-942b-74e8c0053805_gdc_realn.bam 191650804479 BAM harmonized CPTAC3 4571e0d7-4c43-4ff8-aad2-f39bc4964cdf faa00b5450c027cd03c9235a4534c9b3 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00081.WGS.T C3L-00081 LSCC WGS tumor CPT0001020005 CPT0001020005.WholeGenome.RP-1303.bam 147973966366 BAM submitted_aligned CPTAC3 2169ab4f-5ca7-4f89-bca2-5cfd0e960adf 92d6c62a8a003542b1ba60d71993928b {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.WGS.T.hg38 C3L-00081 LSCC WGS tumor CPT0001020005 499d2ebb-679e-4720-8b86-3c989769d905_gdc_realn.bam 211055991444 BAM harmonized CPTAC3 cb4885fd-11cd-4eca-a876-35c74daf9feb 291cc8acd5d6259d368f514da09100fe {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.WXS.A C3L-00081 LSCC WXS tissue_normal CPT0001030006 CPT0001030006.WholeExome.RP-1303.bam 24579287594 BAM submitted_aligned CPTAC3 d93074c7-fe17-4586-ace5-b96ee03fcbcc 323d218052f4ed215a05efcf92b8be5d {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.WXS.A.hg38 C3L-00081 LSCC WXS tissue_normal CPT0001030006 48433c5e-7746-4ae8-888a-3c9390b460d4_wxs_gdc_realn.bam 33131414600 BAM harmonized CPTAC3 97148966-d2a9-414e-900b-7016bedf7075 07352ff0f6796f32189b69aed68a8e10 {"aliquot_tag": "ALQ_10738b9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00081.WXS.N C3L-00081 LSCC WXS blood_normal CPT0000010163 CPT0000010163.WholeExome.RP-1303.bam 27469447105 BAM submitted_aligned CPTAC3 8ee1153c-e13c-44e9-bc43-cc3503a0eb02 d345efbc6063857e337dbb145d525da0 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00081.WXS.N.hg38 C3L-00081 LSCC WXS blood_normal CPT0000010163 5e04faec-58e8-403f-942b-74e8c0053805_gdc_realn.bam 39312702311 BAM harmonized CPTAC3 ec948c00-910b-4c7b-82a7-4d209d377116 f49ba5dc8c8d17dab14f5fd156189351 {"aliquot_tag": "ALQ_eb36ea76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00081.WXS.T C3L-00081 LSCC WXS tumor CPT0001020005 CPT0001020005.WholeExome.RP-1303.bam 38606355959 BAM submitted_aligned CPTAC3 529c8f32-fe2c-46b4-a853-587e5b738cac b8a7512c320d6e18b9993037d10caba9 {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00081.WXS.T.hg38 C3L-00081 LSCC WXS tumor CPT0001020005 499d2ebb-679e-4720-8b86-3c989769d905_gdc_realn.bam 52293773887 BAM harmonized CPTAC3 16477a75-08b9-4c77-9117-30dbb59d9f84 7b90eaacf6adb2fd777331487c1533ff {"aliquot_tag": "ALQ_b41af396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.MethArray.Green.A C3L-00083 LUAD Methylation_Array tissue_normal CPT0091870009 203028200101_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 7bcc51bd-364a-4861-9d0d-1d7b59c796d0 861f4b66c68f591fec70837557a3ee32 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.MethArray.Green.T C3L-00083 LUAD Methylation_Array tumor CPT0091860013 202234380051_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c7995185-55a6-4f7f-9bbc-019fa7cc6878 a7c4911cbe36790166a67926eb111854 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.MethArray.Red.A C3L-00083 LUAD Methylation_Array tissue_normal CPT0091870009 203028200101_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 5772bfa3-9607-4e20-8d87-b335a6859a04 96bf555d2cc4dca73dc4b9f73c1dbea0 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.MethArray.Red.T C3L-00083 LUAD Methylation_Array tumor CPT0091860013 202234380051_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 eb0c248d-0734-4c1d-81bb-ab422452c614 5c8ed709e3695970e74aef3618796407 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.miRNA-Seq.A.hg38 C3L-00083 LUAD miRNA-Seq tissue_normal CPT0091870006 329e0523-ffcb-4ab6-ae07-db3ce2b6a586_mirnaseq_gdc_realn.bam 186261081 BAM harmonized CPTAC3 526ce0ef-dc4b-409b-b24c-fa488604b2ca 2642821e65bd31eab73d7b0ff02f1c06 {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.miRNA-Seq.S42_L002_R1.A C3L-00083 LUAD miRNA-Seq tissue_normal CPT0091870006 181108_UNC31-K00269_0163_BH23TVBBXY_TAATCG_S42_L002_R1_001.unaln.bam 166140861 BAM S42_L002_R1 submitted_unaligned CPTAC3 a90836a6-a2aa-4476-bbb6-8bd35e08b1b1 7b557cd714c72b10a4732469373581ca {"aliquot_tag": "ALQ_16efb41a", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.miRNA-Seq.S4_L006_R1.T C3L-00083 LUAD miRNA-Seq tumor CPT0091860006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTTGTA_S4_L006_R1_001.unaln.bam 210792312 BAM S4_L006_R1 submitted_unaligned CPTAC3 256f98a0-d3f7-4a5d-8941-69d5c73e49fa 277e88cc403c6f40061f0be8bad6ba9e {"aliquot_tag": "ALQ_2b8f9daa", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.miRNA-Seq.T.hg38 C3L-00083 LUAD miRNA-Seq tumor CPT0091860006 af1a7521-0fcd-4b95-a4ac-eb5250f78b5f_mirnaseq_gdc_realn.bam 234458225 BAM harmonized CPTAC3 862b8f68-36c9-4926-babc-5f3fcdc0f2e7 97a09bf11ff240f4e9074f6b9a417e02 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.RNA-Seq.chimeric.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.chimeric.gdc_realn.bam 40485528 BAM chimeric harmonized CPTAC3 8369df40-4495-4385-adf6-5b6b9625d6af eed157666e65803d583cb5970cf395ef {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.RNA-Seq.chimeric.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.chimeric.gdc_realn.bam 25066864 BAM chimeric harmonized CPTAC3 701fda35-1f6a-4b46-a55e-06fe71be9ac5 9fde023653449ca754e945e7a8af0221 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.RNA-Seq.genomic.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.genomic.gdc_realn.bam 6926438730 BAM genomic harmonized CPTAC3 5272ec5e-96fb-496d-9218-6057ccd7003f dcbb5f05e37d03e184c24d91f2b13c9d {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.RNA-Seq.genomic.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.genomic.gdc_realn.bam 9498180816 BAM genomic harmonized CPTAC3 2c30bab8-1ecd-4fbc-8469-adfb8244b54e 76d8c783b8b3f6f8634817f294c33d11 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.RNA-Seq.S23_L006_R1.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 3073545641 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 547747fd-bc4e-48f7-9b6d-cbd97b09c44a 98aeed38e3184adcbc4915e5e73b18cf {"aliquot_tag": "ALQ_16efb41a", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.RNA-Seq.S23_L006_R2.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 3050945016 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 9eb82bcc-2f71-42bd-b81c-dcce5574e105 dcb98f613af8764bf818240691a868f5 {"aliquot_tag": "ALQ_16efb41a", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.RNA-Seq.S7_L008_R1.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 3238569706 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 2c84bd2a-e9a9-4217-add6-56698c1c2a4f ac0a4d00d8b2a5ef0948a7341628bb59 {"aliquot_tag": "ALQ_2b8f9daa", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.RNA-Seq.S7_L008_R2.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 3504350542 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 869eced6-9373-4cf5-92f9-a3dc8cad7110 b25f8190cc6991bac89871d02ced1794 {"aliquot_tag": "ALQ_2b8f9daa", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.RNA-Seq.transcriptome.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.transcriptome.gdc_realn.bam 6789029029 BAM transcriptome harmonized CPTAC3 bfdce880-dd1c-4447-bcac-60f622493b6c e2fbb2f0d8d49a3cf5b0d688e44f8436 {"aliquot_tag": "ALQ_16efb41a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.RNA-Seq.transcriptome.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.transcriptome.gdc_realn.bam 6992588266 BAM transcriptome harmonized CPTAC3 53f5a336-e4fe-4de8-9cbf-5d04413a9b5f 0b2f92a28043dd370a80f1f73d9037c7 {"aliquot_tag": "ALQ_2b8f9daa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.WGS.A C3L-00083 LUAD WGS tissue_normal CPT0091870009 CPT0091870009.WholeGenome.RP-1303.bam 59141030706 BAM submitted_aligned CPTAC3 08a47d22-0245-4c34-9fd1-aaf65df2c403 e117a98905fad9e3c1f62fa77b8c537c {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.WGS.A.hg38 C3L-00083 LUAD WGS tissue_normal CPT0091870009 6aa4d1fe-35eb-4db1-9427-3398beedae1d_wgs_gdc_realn.bam 86037221741 BAM harmonized CPTAC3 8535bce5-31d8-4f7b-bbb7-ef9ed49c1517 5b5900863d6617530cac0ca56be77c20 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.WGS.N C3L-00083 LUAD WGS blood_normal CPT0093680002 CPT0093680002.WholeGenome.RP-1303.bam 66659002937 BAM submitted_aligned CPTAC3 a536a599-9dbc-477a-a179-1254a1cb5229 fbf4b3adc19aa6988a03717f04404ec1 {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00083.WGS.N.hg38 C3L-00083 LUAD WGS blood_normal CPT0093680002 2eddaefa-786d-42e4-ab02-e94a893a9441_wgs_gdc_realn.bam 97867709363 BAM harmonized CPTAC3 7ac479d6-5d12-4169-9908-a789d8fbe546 b4fd74622e2a415ccb82a4777dd35791 {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00083.WGS.T C3L-00083 LUAD WGS tumor CPT0091860013 CPT0091860013.WholeGenome.RP-1303.bam 65973252809 BAM submitted_aligned CPTAC3 932d3bfb-76b6-43da-89cb-97cded9be3de 47eca33968ba334c88edc63a3ec6ca36 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.WGS.T.hg38 C3L-00083 LUAD WGS tumor CPT0091860013 560018e3-da42-4581-b77d-db661cb3a7b4_wgs_gdc_realn.bam 96680796121 BAM harmonized CPTAC3 e1ea371a-d8a3-4b25-aee2-a384da065956 d16d711a031ec870eb0e13f60f513e9b {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.WXS.A C3L-00083 LUAD WXS tissue_normal CPT0091870009 CPT0091870009.WholeExome.RP-1303.bam 30889783270 BAM submitted_aligned CPTAC3 433c0bce-9668-42e0-9664-dcfc56e024eb 10f8e2bb8d7568a2d0e2c8d2ae2bdebd {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.WXS.A.hg38 C3L-00083 LUAD WXS tissue_normal CPT0091870009 6aa4d1fe-35eb-4db1-9427-3398beedae1d_wxs_gdc_realn.bam 41385747481 BAM harmonized CPTAC3 fe5bbd2e-0ea2-423b-8d37-55760086ffd7 400aa90e1a7a220998c657f7371a2722 {"aliquot_tag": "ALQ_8650a98b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00083.WXS.N C3L-00083 LUAD WXS blood_normal CPT0093680002 CPT0093680002.WholeExome.RP-1303.bam 38852616278 BAM submitted_aligned CPTAC3 0295a093-ad8d-4062-8742-62fd6a81066d 56d43baae8c10b24c10419c5a52f94ca {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00083.WXS.N.hg38 C3L-00083 LUAD WXS blood_normal CPT0093680002 2eddaefa-786d-42e4-ab02-e94a893a9441_wxs_gdc_realn.bam 51977545772 BAM harmonized CPTAC3 eb54888f-3169-491f-a385-0bbe85db98b3 f6aa032768b8e4718df4183b96d334c9 {"aliquot_tag": "ALQ_3e47978b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00083.WXS.T C3L-00083 LUAD WXS tumor CPT0091860013 CPT0091860013.WholeExome.RP-1303.bam 28072671557 BAM submitted_aligned CPTAC3 79089e6c-52a2-4d25-b3e4-e5830e3d6a87 d905106a65f5bf14535563034c63af15 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00083.WXS.T.hg38 C3L-00083 LUAD WXS tumor CPT0091860013 560018e3-da42-4581-b77d-db661cb3a7b4_wxs_gdc_realn.bam 38196988685 BAM harmonized CPTAC3 abcf3517-4f77-450e-8bbd-bd7bb7f40077 b32986eb2118352d97d386f6d44011f8 {"aliquot_tag": "ALQ_42fe5864", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00086.MethArray.Green.T C3L-00086 UCEC Methylation_Array tumor CPT0092460009 202234380064_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 daa042f4-bc3f-4ade-90fc-ec2f7d9e4761 dad11ef067eb42f44537035f5df1cd99 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.MethArray.Red.T C3L-00086 UCEC Methylation_Array tumor CPT0092460009 202234380064_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 45573c0d-dcf2-4ccc-a349-8eccefabcde2 28aeec7520ee22ef04551f8abc1f1e7c {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.miRNA-Seq.S11_L007_R1.T C3L-00086 UCEC miRNA-Seq tumor CPT0092460006 180724_UNC32-K00270_0106_BHWK3MBBXX_CATTTT_S11_L007_R1_001.unaln.bam 225683753 BAM S11_L007_R1 submitted_unaligned CPTAC3 f65c15fb-bfbd-46dc-8419-a358ccd647bf de9a591aeab42b85dfe67131a67504b6 {"aliquot_tag": "ALQ_6da5474c", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.miRNA-Seq.T.hg38 C3L-00086 UCEC miRNA-Seq tumor CPT0092460006 413bfaf5-6d1f-4a6b-8963-1225aff596b8_mirnaseq_gdc_realn.bam 244045794 BAM harmonized CPTAC3 e4b723b7-48a5-4d16-983e-381d38aab3be 7274089c3619eb0fc93ee9d89fc4d503 {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.RNA-Seq.chimeric.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.chimeric.gdc_realn.bam 43467899 BAM chimeric harmonized CPTAC3 8eea6359-4603-41a5-8091-25d7f1a08178 af9ba6fb8aa490410f00e324b5b8d875 {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.RNA-Seq.genomic.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.genomic.gdc_realn.bam 9340732260 BAM genomic harmonized CPTAC3 db6c9174-014c-41a0-bd95-8b8ca31f5b11 cf7c34261c5856d3240dd33cdacf0a2d {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.RNA-Seq.S17_L005_R1.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4232488401 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 22637e03-59ca-4f1d-9b27-8fd59c36a403 f34884fc23fb7a4bf6044b725adc9cfa {"aliquot_tag": "ALQ_6da5474c", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.RNA-Seq.S17_L005_R2.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836114269 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 a7f4b09e-21e5-4cff-b9ca-65af1932bf52 ac60929b8028f142898547c42ee3c5d8 {"aliquot_tag": "ALQ_6da5474c", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.RNA-Seq.transcriptome.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.transcriptome.gdc_realn.bam 10967522496 BAM transcriptome harmonized CPTAC3 a9e406ba-64d5-4463-9f2a-fef78f742a2b 9badc039019bf5abfdf9ca130be648c4 {"aliquot_tag": "ALQ_6da5474c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.WGS.N C3L-00086 UCEC WGS blood_normal CPT0093790002 CPT0093790002.WholeGenome.RP-1303.bam 62749203339 BAM submitted_aligned CPTAC3 8967dbcf-5b6b-4b39-a1d7-956b2af1546c 0353b6cc47c6174f3b9b0f0e53472194 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00086.WGS.N.hg38 C3L-00086 UCEC WGS blood_normal CPT0093790002 8fc6c425-9cb5-49f4-86da-ea1361e7a692_wgs_gdc_realn.bam 92368698049 BAM harmonized CPTAC3 5001f32e-96d1-4307-82d2-5eea376f4c5c bffa423070913bc443f9907877aa7286 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00086.WGS.T C3L-00086 UCEC WGS tumor CPT0092460009 CPT0092460009.WholeGenome.RP-1303.bam 62461041923 BAM submitted_aligned CPTAC3 d11bb755-9622-4be1-95f0-39d4fcc9574e b87abbed624c53ac9c555635e59e3114 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.WGS.T.hg38 C3L-00086 UCEC WGS tumor CPT0092460009 5eebe409-6c81-40fa-a496-e1fa53b2de64_wgs_gdc_realn.bam 91710617793 BAM harmonized CPTAC3 36c203cf-6035-41da-909d-466fc33a4315 7f3c1ea120969f720bce1f15c3f49751 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.WXS.N C3L-00086 UCEC WXS blood_normal CPT0093790002 CPT0093790002.WholeExome.RP-1303.bam 31710495865 BAM submitted_aligned CPTAC3 cb8e6606-ef3e-4733-a971-a8bca87139d0 2243f9cc3f7b7a67631e448a4b08c3f8 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00086.WXS.N.hg38 C3L-00086 UCEC WXS blood_normal CPT0093790002 8fc6c425-9cb5-49f4-86da-ea1361e7a692_wxs_gdc_realn.bam 43409145736 BAM harmonized CPTAC3 7df67033-820f-4c6c-acf8-648c2aa6a43d e2732af814c7b395aec73874295a76e5 {"aliquot_tag": "ALQ_c87b6d9e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00086.WXS.T C3L-00086 UCEC WXS tumor CPT0092460009 CPT0092460009.WholeExome.RP-1303.bam 41210403101 BAM submitted_aligned CPTAC3 6a22bae2-7150-4632-b422-0d68cd2cfb2d 229399d2a77e2845644273b86320cff4 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00086.WXS.T.hg38 C3L-00086 UCEC WXS tumor CPT0092460009 5eebe409-6c81-40fa-a496-e1fa53b2de64_wxs_gdc_realn.bam 55911276874 BAM harmonized CPTAC3 5c26bc75-efc0-4a98-8eef-0e9882478b64 60876c39406df617e030103e1e2032b7 {"aliquot_tag": "ALQ_fd1a5add", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00088.MethArray.Green.A C3L-00088 CCRCC Methylation_Array tissue_normal CPT0000890014 204930630114_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 eb13be6d-11ee-4f45-a05b-2a569b32cfe8 8f83dda9c2aab9ad10b26027a0f91da6 {"aliquot_tag": "ALQ_e7f24a89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.MethArray.Green.T C3L-00088 CCRCC Methylation_Array tumor CPT0000870012 201557540017_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6f821204-66ed-48c3-83fe-f5ac9837147a df5d45d1f0c027799824e8c6b05c73a3 {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.MethArray.Red.A C3L-00088 CCRCC Methylation_Array tissue_normal CPT0000890014 204930630114_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 16117f02-1315-4a29-9f63-e5b63c62b2f1 2de0bcfece08eb758984400ee4b5b8ab {"aliquot_tag": "ALQ_e7f24a89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.MethArray.Red.T C3L-00088 CCRCC Methylation_Array tumor CPT0000870012 201557540017_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 48979e81-0e72-40a3-b494-29ad6dcde119 3521aca6a8307d2d1d8cea9af60aadad {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.miRNA-Seq.A.hg38 C3L-00088 CCRCC miRNA-Seq tissue_normal CPT0000890006 764c25b1-67ec-49ea-b413-0e53393c692b_mirnaseq_gdc_realn.bam 225236823 BAM harmonized CPTAC3 457c8990-aad2-4d84-98dd-ce86d7eeff60 6831fa79609add0828d1c4ef0b5e27f1 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.miRNA-Seq.S29_L004_R1.A C3L-00088 CCRCC miRNA-Seq tissue_normal CPT0000890006 181108_UNC31-K00269_0163_BH23TVBBXY_CAACTA_S29_L004_R1_001.unaln.bam 203108666 BAM S29_L004_R1 submitted_unaligned CPTAC3 be7d571e-56fc-48f1-a6d3-fdedf541405b 24fad37fa23ebd12e039b3de6779dbeb {"aliquot_tag": "ALQ_10e71ae4", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.miRNA-Seq.S41_L002_R1.T C3L-00088 CCRCC miRNA-Seq tumor CPT0000870008 181113_UNC31-K00269_0164_AH23NNBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 295188721 BAM S41_L002_R1 submitted_unaligned CPTAC3 44cac622-9968-4206-9315-8c78488cb556 33c28355789a49fb8d11f7ed17959744 {"aliquot_tag": "ALQ_486f8982", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.miRNA-Seq.T.hg38 C3L-00088 CCRCC miRNA-Seq tumor CPT0000870008 2572e684-0287-4944-8956-cf2e2fd5b8c6_mirnaseq_gdc_realn.bam 323712065 BAM harmonized CPTAC3 2822be11-83da-4549-9745-a152a251b43f 41abe68bea7c6090842bc5ac081cee84 {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.RNA-Seq.chimeric.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.chimeric.gdc_realn.bam 81939442 BAM chimeric harmonized CPTAC3 2586eaa0-1e9c-4dd5-a985-57589a9be41c 4d6e1d508962643c043297c7b75bfeb0 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.RNA-Seq.chimeric.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.chimeric.gdc_realn.bam 182374354 BAM chimeric harmonized CPTAC3 22bf8200-96fa-41b3-b972-7601b76da9fa a0533b217bb2469cc1f8363a386ad5ef {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.RNA-Seq.genomic.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.genomic.gdc_realn.bam 7380540524 BAM genomic harmonized CPTAC3 2a90a484-cbbf-4b5a-b842-b4f5d0fe89cd b9490d89eb15bffc9e419d1e910a5622 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.RNA-Seq.genomic.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.genomic.gdc_realn.bam 8489368431 BAM genomic harmonized CPTAC3 d887e09e-3c02-4610-aaac-65fe046d72e2 ce58aed9319414eb2108a57b4d36e7a5 {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.RNA-Seq.S52_L007_R1.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R1_001.fastq.gz 3646165486 FASTQ S52_L007_R1 submitted_unaligned CPTAC3 b48eaeba-39e6-408e-8e4a-6e003e5d945a 6fe1d01d2d7027b3f0844290b0d11d91 {"aliquot_tag": "ALQ_10e71ae4", "sample": "S52", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.RNA-Seq.S52_L007_R2.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R2_001.fastq.gz 3863267802 FASTQ S52_L007_R2 submitted_unaligned CPTAC3 28922cc1-1760-4c38-9380-2e9ee349d1c4 d9fac49caf7018d47254cebe6f1a8334 {"aliquot_tag": "ALQ_10e71ae4", "sample": "S52", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.RNA-Seq.S6_L002_R1.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4092217558 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 d4bd8d64-d651-43d3-b970-c91274b7526e ff6f617fd3d58d93b437b6e115f921c1 {"aliquot_tag": "ALQ_486f8982", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.RNA-Seq.S6_L002_R2.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4594406093 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 894c40bf-32d7-470e-9f19-36a62b7e32ba ceeaae5306e39f5c53ea0d85c07e8244 {"aliquot_tag": "ALQ_486f8982", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.RNA-Seq.transcriptome.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.transcriptome.gdc_realn.bam 8926608929 BAM transcriptome harmonized CPTAC3 3f852cab-27aa-43e3-8e0c-76239b6273f8 a7880e9462c979af4b7b389127679d85 {"aliquot_tag": "ALQ_10e71ae4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.RNA-Seq.transcriptome.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.transcriptome.gdc_realn.bam 10544530884 BAM transcriptome harmonized CPTAC3 d0b2f263-874b-486c-a896-2e419c7c6c13 cc5751e021c3b936209c84dcf9a53ade {"aliquot_tag": "ALQ_486f8982", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.WGS.A C3L-00088 CCRCC WGS tissue_normal CPT0000890009 CPT0000890009.WholeGenome.RP-1303.bam 52451092032 BAM submitted_aligned CPTAC3 7cbadd0f-b100-4301-99b8-a3ee39999bd5 4ec51dd79d390096839afbf7e8da6740 {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.WGS.A.hg38 C3L-00088 CCRCC WGS tissue_normal CPT0000890009 60bdecd2-bd6f-4e64-a096-798dd3d5d945_wgs_gdc_realn.bam 77216653403 BAM harmonized CPTAC3 8bcbf89a-9b67-4003-ade8-1d46318a987e eb87bf4a280f036574f2a97f5235e2be {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.WGS.N C3L-00088 CCRCC WGS blood_normal CPT0003890002 CPT0003890002.WholeGenome.RP-1303.bam 127153243520 BAM submitted_aligned CPTAC3 03bf9f33-4543-44aa-bb88-0563daab731b 8388e91747d78f7d745e2bdb06264f29 {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00088.WGS.N.hg38 C3L-00088 CCRCC WGS blood_normal CPT0003890002 eb373147-2131-45e4-9aeb-06151460719b_gdc_realn.bam 187456117528 BAM harmonized CPTAC3 2eab4f64-7391-4465-a4e5-3714178ca4ad ea00518efd3954eb18ee0f80d3d2d42a {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00088.WGS.T C3L-00088 CCRCC WGS tumor CPT0000870012 CPT0000870012.WholeGenome.RP-1303.bam 128499240674 BAM submitted_aligned CPTAC3 ddd63a0c-60ea-47a1-9ba5-4aa2a5f5a7b4 ab92f4b42f2752a89bcc52d5f2ce1fbf {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.WGS.T.hg38 C3L-00088 CCRCC WGS tumor CPT0000870012 6d73cfe8-aedb-4984-b7a3-66a9a027d712_gdc_realn.bam 188160006784 BAM harmonized CPTAC3 89662f07-19b9-4dee-802b-810107d0dea5 89bdc97fbb5fbe77d336f84d29005dd9 {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.WXS.A C3L-00088 CCRCC WXS tissue_normal CPT0000890009 CPT0000890009.WholeExome.RP-1303.bam 40836554083 BAM submitted_aligned CPTAC3 dd6daaf0-ecf9-4d71-a561-26456b24c165 67e6d8b15ab93b3316cbf531c96d01fe {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.WXS.A.hg38 C3L-00088 CCRCC WXS tissue_normal CPT0000890009 60bdecd2-bd6f-4e64-a096-798dd3d5d945_wxs_gdc_realn.bam 55282630506 BAM harmonized CPTAC3 6a052578-ac0b-40a3-aa70-80a9ab4540cf ec9967bfb066738831fa08110975df13 {"aliquot_tag": "ALQ_80580775", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00088.WXS.N C3L-00088 CCRCC WXS blood_normal CPT0003890002 CPT0003890002.WholeExome.RP-1303.bam 40691725404 BAM submitted_aligned CPTAC3 62486955-7ba8-43a2-a5cf-46b03233ec0c c2993aa1ee23e451047445af11cce648 {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00088.WXS.N.hg38 C3L-00088 CCRCC WXS blood_normal CPT0003890002 eb373147-2131-45e4-9aeb-06151460719b_gdc_realn.bam 54923303429 BAM harmonized CPTAC3 ad30e491-1dcf-4c3e-8280-01316fcd183d 1394118e8443ab888a2275ef2655f779 {"aliquot_tag": "ALQ_2662c460", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00088.WXS.T C3L-00088 CCRCC WXS tumor CPT0000870012 CPT0000870012.WholeExome.RP-1303.bam 24565533059 BAM submitted_aligned CPTAC3 2207df61-a202-49e6-ad31-f89259a53771 f560a50a15f08cf595bbf8222a5e125b {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00088.WXS.T.hg38 C3L-00088 CCRCC WXS tumor CPT0000870012 6d73cfe8-aedb-4984-b7a3-66a9a027d712_gdc_realn.bam 34015262331 BAM harmonized CPTAC3 cd13d733-70d0-49de-bdb2-98e9ccf074af 72d1749ba2a6f638d984e0949f2d2e2c {"aliquot_tag": "ALQ_b1a151dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.MethArray.Green.T C3L-00090 UCEC Methylation_Array tumor CPT0001140005 201557560056_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2e90f820-39f9-4485-9c3f-72b8f3d5526b 6d9a997df815c9b2771d66848efed0c4 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.MethArray.Red.T C3L-00090 UCEC Methylation_Array tumor CPT0001140005 201557560056_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 fb420c34-1c43-4c6b-9d69-6c4cf9694e65 f7f232da4b473670cff76001f00c9a48 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.miRNA-Seq.S27_L004_R1.T C3L-00090 UCEC miRNA-Seq tumor CPT0001140164 181113_UNC31-K00269_0164_AH23NNBBXY_TTAGGC_S27_L004_R1_001.unaln.bam 207505667 BAM S27_L004_R1 submitted_unaligned CPTAC3 407b0ef1-2759-43ef-b9cf-39520e5122d3 c353ac360b9fc7a795d2ceab46d79092 {"aliquot_tag": "ALQ_d09928b4", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.miRNA-Seq.T.hg38 C3L-00090 UCEC miRNA-Seq tumor CPT0001140164 021faa88-c804-417e-841e-63ff35e1db2b_mirnaseq_gdc_realn.bam 229454835 BAM harmonized CPTAC3 7b65a140-e65e-47ae-b105-e5490b5fec71 be003779e722a749254850b5d994f6da {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.chimeric.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.chimeric.gdc_realn.bam 85462736 BAM chimeric harmonized CPTAC3 ddbcd435-effe-43f2-a9fc-ec1029627905 84a6a7947a1bd0b2cdf77d1f9b2adbef {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.chimeric.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.chimeric.gdc_realn.bam 309612395 BAM chimeric harmonized CPTAC3 453a7729-afda-4e12-bac4-e1941e46b03e f629f9cbca77e7a0a3e88190d9ac4790 {"aliquot_tag": "ALQ_cc1b0868", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.genomic.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.genomic.gdc_realn.bam 8171374218 BAM genomic harmonized CPTAC3 20e50197-5136-4359-94f9-36a4bd5e3869 523d931f2706117af3460e52eaaeb0b9 {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.genomic.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.genomic.gdc_realn.bam 14384877946 BAM genomic harmonized CPTAC3 417e9641-a165-4b26-a93e-38092e8a078f d18b4d43145e1df60a27066c64e44100 {"aliquot_tag": "ALQ_cc1b0868", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.S10_L003_R1.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R1_001.fastq.gz 4036659089 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 8ce5618d-9ff6-40f9-aeea-8d8e1633ae38 cc0e201ebbf5750cb68dff7f5cf1fb53 {"aliquot_tag": "ALQ_d09928b4", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.S10_L003_R2.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R2_001.fastq.gz 4410794510 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 06d3fd4a-a623-4146-8500-4f1f17235253 bccc1a8ca98b1774c680967caea81e18 {"aliquot_tag": "ALQ_d09928b4", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.S28_R1.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R1_001.fastq.gz 8350920829 FASTQ S28_R1 submitted_unaligned CPTAC3 fd744fdd-b608-466d-89c0-ac69b4ee336e b6ce9a3d2c0857b115de5bf37eb2e031 {"aliquot_tag": "ALQ_cc1b0868", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.S28_R2.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R2_001.fastq.gz 8717993624 FASTQ S28_R2 submitted_unaligned CPTAC3 9509ef16-9764-4c6d-8927-3cf065b2ec9c de00adb86b1f10ec8f0426a2ed4683e6 {"aliquot_tag": "ALQ_cc1b0868", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.transcriptome.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.transcriptome.gdc_realn.bam 10890734409 BAM transcriptome harmonized CPTAC3 5749aacf-4c29-44af-9319-85592d90686e a5fa5bdd469706f7c02f9e4c686b729b {"aliquot_tag": "ALQ_d09928b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.RNA-Seq.transcriptome.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.transcriptome.gdc_realn.bam 7560715137 BAM transcriptome harmonized CPTAC3 612946e1-cf35-436b-aad9-e11649bce532 f5a8b970ca342424afd9173cd76d3209 {"aliquot_tag": "ALQ_cc1b0868", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.WGS.N C3L-00090 UCEC WGS blood_normal CPT0000040163 CPT0000040163.WholeGenome.RP-1303.bam 150089355874 BAM submitted_aligned CPTAC3 ddb9ef12-d297-4868-a9d6-192874ce63d2 ba935e9828a5b9b5115e5903960284fb {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00090.WGS.N.hg38 C3L-00090 UCEC WGS blood_normal CPT0000040163 7959d3f4-80cb-45f5-99ea-248ac2059877_gdc_realn.bam 220754997092 BAM harmonized CPTAC3 833145ed-db94-4cb2-8429-df062a71bd8a de12ab4ba4f59524c4bb67c536a69bf3 {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00090.WGS.T C3L-00090 UCEC WGS tumor CPT0001140005 CPT0001140005.WholeGenome.RP-1303.bam 167494737156 BAM submitted_aligned CPTAC3 2fc76a58-9c13-4726-bbb9-3034c381ea5a 95982fb150b254215f49425f5103d173 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.WGS.T.hg38 C3L-00090 UCEC WGS tumor CPT0001140005 cfc5140e-1c15-4b9f-83e0-5613e427870e_gdc_realn.bam 240615180579 BAM harmonized CPTAC3 544edc00-ac31-47cf-9489-1a797eb22e53 e393ab18e572e3b8796d0ead36818bdf {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.WXS.N C3L-00090 UCEC WXS blood_normal CPT0000040163 CPT0000040163.WholeExome.RP-1303.bam 34454096383 BAM submitted_aligned CPTAC3 4d0d66b8-65d9-40d4-894b-6cf9bbead21b f3d3ae03dbfb3240bad6e67a087d4bee {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00090.WXS.N.hg38 C3L-00090 UCEC WXS blood_normal CPT0000040163 7959d3f4-80cb-45f5-99ea-248ac2059877_gdc_realn.bam 48271962279 BAM harmonized CPTAC3 d74368b7-1924-4c44-8079-1858f7ebf85a c5a24dbe94b8b02c98e2fa223c83ae6c {"aliquot_tag": "ALQ_23d66506", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00090.WXS.T C3L-00090 UCEC WXS tumor CPT0001140005 CPT0001140005.WholeExome.RP-1303.bam 36140880424 BAM submitted_aligned CPTAC3 f45d244b-6f8e-422e-b66a-ebab6c288193 8239581c966a0da2d5fe552ffbbcecef {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00090.WXS.T.hg38 C3L-00090 UCEC WXS tumor CPT0001140005 cfc5140e-1c15-4b9f-83e0-5613e427870e_gdc_realn.bam 49173156327 BAM harmonized CPTAC3 055e85d1-c36d-4fbd-b578-4fd23e81b9e5 873e12ce63b39ab28de201d144b81585 {"aliquot_tag": "ALQ_f006d593", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.MethArray.Green.A C3L-00093 LUAD Methylation_Array tissue_normal CPT0086320009 203027390040_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 de0c5eb3-ac50-4f0c-9bf9-3ef04e375cf4 5fa6e7ce7fb1d900fccb524479da76bf {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.MethArray.Green.T C3L-00093 LUAD Methylation_Array tumor CPT0086310009 202234370120_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7b397ebc-a322-4631-88d8-fba0ce00a042 a0d6efa455c5b0ab66997f6eda4af0b9 {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.MethArray.Red.A C3L-00093 LUAD Methylation_Array tissue_normal CPT0086320009 203027390040_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 3eb642e9-317e-40f1-9df7-6441b79380bc 6a3f71c31535539a98b88fdad9d56111 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.MethArray.Red.T C3L-00093 LUAD Methylation_Array tumor CPT0086310009 202234370120_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 79b44df3-6b13-4a02-aeb3-158d75e5aff2 f76847e610e762c71a9606065428a8eb {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.miRNA-Seq.A.hg38 C3L-00093 LUAD miRNA-Seq tissue_normal CPT0086320006 b974679d-1bb9-414c-b747-1b004980a12d_mirnaseq_gdc_realn.bam 297127765 BAM harmonized CPTAC3 3eccd98d-a875-476c-8b40-9bdeecf4b875 485c303e2ea750f74c44520c9d877ca1 {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.miRNA-Seq.S10_L005_R1.A C3L-00093 LUAD miRNA-Seq tissue_normal CPT0086320006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L005_R1_001.unaln.bam 262021390 BAM S10_L005_R1 submitted_unaligned CPTAC3 057c2207-4dfb-4152-8501-ac65d72c5182 15a214eafde23c50e3461adf1d132b91 {"aliquot_tag": "ALQ_bdc5f5b9", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.miRNA-Seq.S37_L004_R1.T C3L-00093 LUAD miRNA-Seq tumor CPT0086310006 181113_UNC31-K00269_0164_AH23NNBBXY_AGTCAA_S37_L004_R1_001.unaln.bam 280713350 BAM S37_L004_R1 submitted_unaligned CPTAC3 53a76505-fd6a-42b8-a7b7-534476565626 ba88dab5970d9320ec3c33a19127e900 {"aliquot_tag": "ALQ_fa658f69", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.miRNA-Seq.T.hg38 C3L-00093 LUAD miRNA-Seq tumor CPT0086310006 58e9ac0f-f386-43d0-a308-36b488096ff6_mirnaseq_gdc_realn.bam 303562733 BAM harmonized CPTAC3 d3c02672-94bd-472d-ab48-702e94c9a630 839a53a6c1f4bfe50a244a47b7b56c4a {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.RNA-Seq.chimeric.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.chimeric.gdc_realn.bam 104409662 BAM chimeric harmonized CPTAC3 a35673bd-94d3-4467-9640-1a0a0d562fd4 132223df74185645990e9c12857f47bb {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.RNA-Seq.chimeric.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.chimeric.gdc_realn.bam 33631134 BAM chimeric harmonized CPTAC3 c09ea0e7-cd82-4c04-b808-e4832f242476 0b4c4a75f225405212dc8271c690b6c1 {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.RNA-Seq.genomic.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.genomic.gdc_realn.bam 7790988728 BAM genomic harmonized CPTAC3 294385e2-5b06-4b04-a267-fd5051a49897 6659faf984f3b9be562b30bffccf4134 {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.RNA-Seq.genomic.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.genomic.gdc_realn.bam 8143415019 BAM genomic harmonized CPTAC3 d4069ad7-276f-4425-8633-0d700fe39c0b 964a3ce5884d16433dcf11468bd89d9f {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.RNA-Seq.S5_L002_R1.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 3969360844 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 50f03452-ea50-4a54-91e0-95acdff6f0cb 1f81174054de52607625c1be705e0609 {"aliquot_tag": "ALQ_fa658f69", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.RNA-Seq.S5_L002_R2.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4350518019 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 79f2bde6-3fe1-4311-92bd-94ae03050ea3 1437799c416c416e07dac4eca2f79a9d {"aliquot_tag": "ALQ_fa658f69", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.RNA-Seq.S9_L003_R1.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R1_001.fastq.gz 4144511696 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 99fb67eb-2ca7-414e-ae01-911a4f5e79b3 8b45d4a18da7b3fe80c6f7a48cee1d05 {"aliquot_tag": "ALQ_bdc5f5b9", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.RNA-Seq.S9_L003_R2.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R2_001.fastq.gz 4398493874 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 408f76e2-86c8-4b9f-b7d5-dbfbbfc73f8a 1298163cae708da92ec173fa4a707398 {"aliquot_tag": "ALQ_bdc5f5b9", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.RNA-Seq.transcriptome.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.transcriptome.gdc_realn.bam 9604153244 BAM transcriptome harmonized CPTAC3 c705a219-ac4f-4e45-af11-fe67c53d9d96 b060dac5e8ef66195210ee037df82377 {"aliquot_tag": "ALQ_bdc5f5b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.RNA-Seq.transcriptome.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.transcriptome.gdc_realn.bam 11989541712 BAM transcriptome harmonized CPTAC3 c17d5f94-b91d-4fa5-b9f1-ce31f7e3c7a0 6acb08e75f37cdacca2338bbdc1b3204 {"aliquot_tag": "ALQ_fa658f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.WGS.A C3L-00093 LUAD WGS tissue_normal CPT0086320009 CPT0086320009.WholeGenome.RP-1303.bam 58829759928 BAM submitted_aligned CPTAC3 17b6f5c7-3348-43ed-b08d-08ba79cbdd01 754daa9820384f109ef58a8713aa0686 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.WGS.A.hg38 C3L-00093 LUAD WGS tissue_normal CPT0086320009 957f5e10-59a8-4402-8c03-2fbfe508f403_wgs_gdc_realn.bam 85306167668 BAM harmonized CPTAC3 c8408009-b129-42b5-8fb3-239474950f2d 05c53ac15443b0261c38a9946910b259 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.WGS.N C3L-00093 LUAD WGS blood_normal CPT0087370002 CPT0087370002.WholeGenome.RP-1303.bam 55618405980 BAM submitted_aligned CPTAC3 2c933f4f-75a7-40c6-93d7-400c9e3703d2 5b5a20a21b59708c64e6fb1bd6cf71df {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00093.WGS.N.hg38 C3L-00093 LUAD WGS blood_normal CPT0087370002 75952a65-9864-45c6-9117-68c289bc412c_wgs_gdc_realn.bam 81332174860 BAM harmonized CPTAC3 325d2af5-9bd2-48e1-8802-25903c6b719f 64605a95beb2e9ec258f08de20982f85 {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00093.WGS.T C3L-00093 LUAD WGS tumor CPT0086310009 CPT0086310009.WholeGenome.RP-1303.bam 56985454789 BAM submitted_aligned CPTAC3 1c8395a6-6378-4559-817c-adb79e8a555b 8ee942e8841dddc2e728fedaa02f00bd {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.WGS.T.hg38 C3L-00093 LUAD WGS tumor CPT0086310009 c737a9df-b448-4aa0-a819-38fd00f06313_wgs_gdc_realn.bam 84805812639 BAM harmonized CPTAC3 d510c0c0-a514-40f1-8009-fdcdcc717668 5ae4ecb102c66716b88ece9c3a807521 {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.WXS.A C3L-00093 LUAD WXS tissue_normal CPT0086320009 CPT0086320009.WholeExome.RP-1303.bam 28134301830 BAM submitted_aligned CPTAC3 5096572a-3ba7-4644-b698-394b53d1b1ea 378f05d29a906cd759c9ffeb25eb70a2 {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.WXS.A.hg38 C3L-00093 LUAD WXS tissue_normal CPT0086320009 957f5e10-59a8-4402-8c03-2fbfe508f403_wxs_gdc_realn.bam 38433553922 BAM harmonized CPTAC3 14db3d62-2a98-4396-829c-04db7ab6e4df 2b96a23424fedbaff17cc985c74dc83b {"aliquot_tag": "ALQ_2d7ae828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00093.WXS.N C3L-00093 LUAD WXS blood_normal CPT0087370002 CPT0087370002.WholeExome.RP-1303.bam 25485391765 BAM submitted_aligned CPTAC3 6d38fe5c-0038-4bfe-876d-cc292458bd7b 5b54bf00f8e5bf1f3271c487269b81dc {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00093.WXS.N.hg38 C3L-00093 LUAD WXS blood_normal CPT0087370002 75952a65-9864-45c6-9117-68c289bc412c_wxs_gdc_realn.bam 34066825094 BAM harmonized CPTAC3 2f059402-756c-4b0a-a775-11bec5d96a98 d8ca907bd48c7fb358a8d0ab0f33c518 {"aliquot_tag": "ALQ_d43fb564", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00093.WXS.T C3L-00093 LUAD WXS tumor CPT0086310009 CPT0086310009.WholeExome.RP-1303.bam 43410525008 BAM submitted_aligned CPTAC3 c241d193-c65d-439f-bdec-10620a5ccbb3 d776e39f0e82afda41d9a04bc4a4df2a {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00093.WXS.T.hg38 C3L-00093 LUAD WXS tumor CPT0086310009 c737a9df-b448-4aa0-a819-38fd00f06313_wxs_gdc_realn.bam 58914624238 BAM harmonized CPTAC3 4e567f18-72ac-4b7a-93c2-041cd80db908 668e3eccc751b27c51b16d8552156aaf {"aliquot_tag": "ALQ_6ada92f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.MethArray.Green.A C3L-00094 LUAD Methylation_Array tissue_normal CPT0000930009 203028200093_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 42d9f4fe-5d2a-48cd-a520-79f64fff74ad e8a20c0b36add242d7cbd0d465a2451f {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.MethArray.Green.T C3L-00094 LUAD Methylation_Array tumor CPT0000920005 201557560050_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5350b401-32ad-44a4-9b51-3b215577821f 06998fdb961f0bc0563fae7233bed49e {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.MethArray.Red.A C3L-00094 LUAD Methylation_Array tissue_normal CPT0000930009 203028200093_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 5996f844-911f-4c23-839b-d21595b3c487 1079b7e37f050e1f0d454f8255b6b4f6 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.MethArray.Red.T C3L-00094 LUAD Methylation_Array tumor CPT0000920005 201557560050_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 b2b859b7-08b6-46b1-90c1-c4ae26e90f84 c74d2db72372f62477cfbdfb33715bac {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.miRNA-Seq.A.hg38 C3L-00094 LUAD miRNA-Seq tissue_normal CPT0000930006 9376c39c-11f6-4a59-b2eb-cfdf2f826e3d_mirnaseq_gdc_realn.bam 297551732 BAM harmonized CPTAC3 c6d76531-9636-4f46-9432-dfbf6ef805fa 4ab10b84314ad39483c479d223ecafc9 {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.miRNA-Seq.S26_L008_R1.A C3L-00094 LUAD miRNA-Seq tissue_normal CPT0000930006 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L008_R1_001.unaln.bam 270889793 BAM S26_L008_R1 submitted_unaligned CPTAC3 96f4cd6f-ec44-4921-9543-4297d7204fdb 82034f8ea49ee942f2ca77487d1e5334 {"aliquot_tag": "ALQ_910bd1e0", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.miRNA-Seq.S33_L002_R1.T C3L-00094 LUAD miRNA-Seq tumor CPT0000920012 181012_UNC32-K00270_0124_AH223CBBXY_CTTGTA_S33_L002_R1_001.unaln.bam 224311936 BAM S33_L002_R1 submitted_unaligned CPTAC3 24cd08ff-a5f8-4eae-aac5-9013efa62dd9 a7d2bb345eb28633ae94644a88a59026 {"aliquot_tag": "ALQ_b21d0d08", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.miRNA-Seq.T.hg38 C3L-00094 LUAD miRNA-Seq tumor CPT0000920012 4cd8df3f-175e-4c8a-bf32-dfc9490fb54b_mirnaseq_gdc_realn.bam 242962264 BAM harmonized CPTAC3 85a21e7e-dbbf-4092-bf9d-f0b1655b6f82 c7023e2c0dc1a531a8cb8f0f2b984023 {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.RNA-Seq.chimeric.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.chimeric.gdc_realn.bam 95346629 BAM chimeric harmonized CPTAC3 f4ac9fb5-d25d-41f2-8bcb-d7681cc3e441 489bfabe483cb054e143f55ae40d13b5 {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.RNA-Seq.chimeric.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.chimeric.gdc_realn.bam 113806740 BAM chimeric harmonized CPTAC3 0a8a85df-a671-4bf0-b32c-250b11e8ff78 adc1cb586de0605a76ebdd106561c8d2 {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.RNA-Seq.genomic.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.genomic.gdc_realn.bam 8640444843 BAM genomic harmonized CPTAC3 e7a5ddcf-ae66-4efc-9a1a-b70d0c715ecd a3289060dfca393b7afba2172272098e {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.RNA-Seq.genomic.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.genomic.gdc_realn.bam 8829381866 BAM genomic harmonized CPTAC3 f7c8b80f-a532-4190-92e2-391b359d5410 ba279bf2237c957ccadff9fe6fe2b5eb {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.RNA-Seq.S3_L001_R1.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3882737829 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 637c9c2b-25a7-484f-8c9e-b289ccb92ca0 1902d6751a2997b1fc862df5bb53bae6 {"aliquot_tag": "ALQ_b21d0d08", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.RNA-Seq.S3_L001_R2.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 4264164416 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 44f555cb-1abe-4062-acd5-83afe55fc8e4 89048493887faf90018f5308c9b4b1bd {"aliquot_tag": "ALQ_b21d0d08", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.RNA-Seq.S9_L003_R1.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R1_001.fastq.gz 4219590338 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 c38ccbc9-b426-4508-b494-0a9029f7ea4a 327e491bc904a0f99fe2b2c6d1e8ae56 {"aliquot_tag": "ALQ_910bd1e0", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.RNA-Seq.S9_L003_R2.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R2_001.fastq.gz 4537164488 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 b36c367b-dfd3-4390-b75c-96004aed8468 750383a193dea4394818c435f1e1e4bb {"aliquot_tag": "ALQ_910bd1e0", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.RNA-Seq.transcriptome.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.transcriptome.gdc_realn.bam 10456265799 BAM transcriptome harmonized CPTAC3 c5612d70-5f71-4d2a-9cf1-ec4b114fbd24 9c9a72133dd7c6cd2cb6418edc020acb {"aliquot_tag": "ALQ_910bd1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.RNA-Seq.transcriptome.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.transcriptome.gdc_realn.bam 9808994110 BAM transcriptome harmonized CPTAC3 933f0419-f937-4132-b93e-2db584fe916c 9d97aa07fe2ae8a94fac2275e0f443b0 {"aliquot_tag": "ALQ_b21d0d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.WGS.A C3L-00094 LUAD WGS tissue_normal CPT0000930009 CPT0000930009.WholeGenome.RP-1303.bam 59287011064 BAM submitted_aligned CPTAC3 79c0deec-ba69-47eb-8f0a-431da754ce18 6e13c7fb99e79d75604127e716ec4a45 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.WGS.A.hg38 C3L-00094 LUAD WGS tissue_normal CPT0000930009 691dec7d-c8ae-4f74-95e4-461cf442ac1d_wgs_gdc_realn.bam 86583779340 BAM harmonized CPTAC3 92182d9d-7eab-433b-bdd7-865004b01319 3f90e00c98265fc570214c439c5b82b4 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.WGS.N C3L-00094 LUAD WGS blood_normal CPT0003900002 CPT0003900002.WholeGenome.RP-1303.bam 143379345416 BAM submitted_aligned CPTAC3 7f8ed1af-c13e-44b5-9e83-e294703934d2 f6ffa74448fc94ca37b49ac788ba29c2 {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00094.WGS.N.hg38 C3L-00094 LUAD WGS blood_normal CPT0003900002 ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 209201510449 BAM harmonized CPTAC3 84077077-8bf8-4370-bea5-afd475908684 a16790ffb82c2b4ecbc1fb255fecc564 {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00094.WGS.T C3L-00094 LUAD WGS tumor CPT0000920005 CPT0000920005.WholeGenome.RP-1303.bam 139954482025 BAM submitted_aligned CPTAC3 e4999135-0d67-4a36-b098-48288e880042 59a48cace35f2b85f06cf841ae700fbf {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.WGS.T.hg38 C3L-00094 LUAD WGS tumor CPT0000920005 f4ce09d1-5d07-486d-9571-594f91df3a2c_gdc_realn.bam 203051531923 BAM harmonized CPTAC3 dd9acd24-b696-4367-a896-2424799b1cb8 3dd5bd75450df3ffff118770d3ccc72a {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.WXS.A C3L-00094 LUAD WXS tissue_normal CPT0000930009 CPT0000930009.WholeExome.RP-1303.bam 36987624475 BAM submitted_aligned CPTAC3 887fbde6-8268-40e5-805c-b9446f0dacf5 2f3fa2c6cc4d34e32ee69e613c35b980 {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.WXS.A.hg38 C3L-00094 LUAD WXS tissue_normal CPT0000930009 691dec7d-c8ae-4f74-95e4-461cf442ac1d_wxs_gdc_realn.bam 49609560684 BAM harmonized CPTAC3 1d87f398-b674-4c45-a1ef-8dff8e21a6af 63b83c955a78eb8b1088e0f35b32d69f {"aliquot_tag": "ALQ_1b4cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00094.WXS.N C3L-00094 LUAD WXS blood_normal CPT0003900002 CPT0003900002.WholeExome.RP-1303.bam 29033590086 BAM submitted_aligned CPTAC3 98b6fc0d-4a04-4f16-af00-eec20175107a cc2deb919b47668e5601f5923f49d60a {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00094.WXS.N.hg38 C3L-00094 LUAD WXS blood_normal CPT0003900002 ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 39049896925 BAM harmonized CPTAC3 328bd359-d972-4bbc-9fc7-541d883db07d 44d519fd30898915b33eab5686535926 {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00094.WXS.T C3L-00094 LUAD WXS tumor CPT0000920005 CPT0000920005.WholeExome.RP-1303.bam 33346843527 BAM submitted_aligned CPTAC3 7e42e5ac-ad12-4448-93f0-f20886330c14 db544ea830b6415d3ffeef608a12de2c {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00094.WXS.T.hg38 C3L-00094 LUAD WXS tumor CPT0000920005 f4ce09d1-5d07-486d-9571-594f91df3a2c_gdc_realn.bam 45847939308 BAM harmonized CPTAC3 3f162dd1-53ca-4295-ad07-cd7a796d8d3d 687180fb35d9cb9a1a9c21ea1c16d4a4 {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.DUP_85a21550.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM submitted_aligned CPTAC3 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00095.DUP_85a21550.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM harmonized CPTAC3 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00095.MethArray.Green.A C3L-00095 LUAD Methylation_Array tissue_normal CPT0001690009 203027390073_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4f198590-798f-4499-95c8-c45fccd0a879 ffce288a3d37a981972557f097e4bdfc {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.MethArray.Green.T C3L-00095 LUAD Methylation_Array tumor CPT0001660005 201557540007_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 d3890b3d-a816-4613-ad1f-0c270067e7bd f2ce7466c0e6dde209b3e11f3a4ed345 {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.MethArray.Red.A C3L-00095 LUAD Methylation_Array tissue_normal CPT0001690009 203027390073_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6a9689b1-9866-4771-93c7-05618d8714db 1439bc006cca0047ed73cdd2a74f94da {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.MethArray.Red.T C3L-00095 LUAD Methylation_Array tumor CPT0001660005 201557540007_R05C01_Red.idat 13676222 IDAT Red NA CPTAC3 3369e5ab-aec9-4a7e-967a-3aebe47d999e cf6af662b785bb61fecb2b6d9adab139 {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.miRNA-Seq.A.hg38 C3L-00095 LUAD miRNA-Seq tissue_normal CPT0001690006 e07d2ce3-0047-4b0c-aa7c-22c9c2381f48_mirnaseq_gdc_realn.bam 259141036 BAM harmonized CPTAC3 581903ca-528f-46de-9dce-406ff9d09197 a283b84436a1f3b37d2c8326819ed60f {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.miRNA-Seq.S24_L002_R1.T C3L-00095 LUAD miRNA-Seq tumor CPT0001660008 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L002_R1_001.unaln.bam 211540113 BAM S24_L002_R1 submitted_unaligned CPTAC3 4fd2de7a-e163-4c58-ae58-ec37809797d1 2cab0adc3355174d5036a4e5274f51c6 {"aliquot_tag": "ALQ_e972caf6", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.miRNA-Seq.S27_L008_R1.A C3L-00095 LUAD miRNA-Seq tissue_normal CPT0001690006 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L008_R1_001.unaln.bam 232574427 BAM S27_L008_R1 submitted_unaligned CPTAC3 273065be-bcaf-46f8-a791-e22359c7498b 29f09600c7bc6c707bfd2b085ebf7374 {"aliquot_tag": "ALQ_8c9a7020", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.miRNA-Seq.T.hg38 C3L-00095 LUAD miRNA-Seq tumor CPT0001660008 c289b80b-bb9e-4d22-8e82-0dc5dc24fcde_mirnaseq_gdc_realn.bam 233378893 BAM harmonized CPTAC3 585e4df7-d12e-4ef0-a77b-fc914e7649ff c15148c3d9cd0b079d5f205a5a2771a7 {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.RNA-Seq.chimeric.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.chimeric.gdc_realn.bam 128555111 BAM chimeric harmonized CPTAC3 fffc7dad-b234-49a4-a020-f39078dcc2dd 1e689b26b4b7f59921ed10227e244fd9 {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.RNA-Seq.chimeric.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.chimeric.gdc_realn.bam 66326939 BAM chimeric harmonized CPTAC3 ec7f6788-c89a-45c7-9a3e-f0030c858e12 b0279528666ceab317a31575f15f4418 {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.RNA-Seq.genomic.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.genomic.gdc_realn.bam 7604501464 BAM genomic harmonized CPTAC3 07a91b77-8385-4a47-9d5c-204284488e34 ca93b7aed10553067455bfd503c3dd17 {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.RNA-Seq.genomic.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.genomic.gdc_realn.bam 8022260193 BAM genomic harmonized CPTAC3 ff3e9462-796a-4405-872b-2ad51acfe0ee 329fe5cfc58340b8ec001404e6b1f7aa {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.RNA-Seq.S11_L003_R1.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R1_001.fastq.gz 3646684986 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 e1a8bf73-5ae2-45b8-a9ed-4c5381346902 81f18182db340bbf52930a96dd8323ff {"aliquot_tag": "ALQ_8c9a7020", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.RNA-Seq.S11_L003_R2.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R2_001.fastq.gz 3966899842 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 283a503b-f739-49f4-84e9-16216878381a 709c53cfed79cd6a41a3719ec89d5a14 {"aliquot_tag": "ALQ_8c9a7020", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.RNA-Seq.S7_L002_R1.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R1_001.fastq.gz 3710372720 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 7e020a14-2e15-4e88-b8d8-14f8e6e01cbe 3bc13e64396280f25d3702836e00ae08 {"aliquot_tag": "ALQ_e972caf6", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.RNA-Seq.S7_L002_R2.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4100936080 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 35cf770b-a392-4a21-b7cc-707a3aa5092c a8a45b7c2e426539eb1f580ab47c2d40 {"aliquot_tag": "ALQ_e972caf6", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.RNA-Seq.transcriptome.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.transcriptome.gdc_realn.bam 9355054145 BAM transcriptome harmonized CPTAC3 769ef4a5-9b5e-4c91-bb3f-3aaf4686a230 a9a42fad48babd17c58e8ca313b13597 {"aliquot_tag": "ALQ_8c9a7020", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.RNA-Seq.transcriptome.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.transcriptome.gdc_realn.bam 10141946868 BAM transcriptome harmonized CPTAC3 f785e31a-1cdd-43cd-84a6-76d857f32e3e 762d27554dc1b3537befdb5139b929b2 {"aliquot_tag": "ALQ_e972caf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.WGS.A C3L-00095 LUAD WGS tissue_normal CPT0001690009 CPT0001690009.WholeGenome.RP-1303.bam 56181467899 BAM submitted_aligned CPTAC3 9285b91a-9cc5-4501-a1ab-dabcbc20f91c e0785f5f8ff4df9509532cc68b1eef50 {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.WGS.A.hg38 C3L-00095 LUAD WGS tissue_normal CPT0001690009 8fe04429-c7db-4162-aad6-a408b805aa6d_wgs_gdc_realn.bam 81778809932 BAM harmonized CPTAC3 192d9a31-4dec-4ee2-8a66-6311552ad1e4 a48fce3d08ea6b23d04f50a74f00f833 {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.WGS.N C3L-00095 LUAD WGS blood_normal CPT0003910002 CPT0003910002.WholeGenome.RP-1303.bam 135592895181 BAM submitted_aligned CPTAC3 60e0676f-351c-465e-92e5-8273421c646d f9a9ed8e6a5d31d3eec161eb26ba58a3 {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00095.WGS.N.hg38 C3L-00095 LUAD WGS blood_normal CPT0003910002 758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 197918081619 BAM harmonized CPTAC3 fd525ceb-bac6-4283-9c24-73776b2451f6 5e142d4345d7787e94e6c04d394a8d2e {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00095.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005 CPT0001660005.WholeGenome.RP-1303.bam 148288840542 BAM submitted_aligned CPTAC3 21e65603-ef7f-43af-bd5d-c51efdba6d4d fc02ed037f6c4364c291966d120b1bfa {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005 e0e4eca2-5f90-4ae4-924f-4e5548af49b1_gdc_realn.bam 214912595561 BAM harmonized CPTAC3 ad7da10d-97cd-44e0-95ee-a71b1b488fcd f29196fe8021c623e5f0d96a5ad101de {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.WXS.A C3L-00095 LUAD WXS tissue_normal CPT0001690009 CPT0001690009.WholeExome.RP-1303.bam 76609175796 BAM submitted_aligned CPTAC3 383c93e4-a9a9-47f2-88f2-76ef669754c3 cd220380b9468f8a0f43a9c419f714ac {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.WXS.A.hg38 C3L-00095 LUAD WXS tissue_normal CPT0001690009 8fe04429-c7db-4162-aad6-a408b805aa6d_wxs_gdc_realn.bam 103305046426 BAM harmonized CPTAC3 b5f75ffd-bdff-4255-bd17-74dd003f190e 71770d7b5395aaa056469dc45ef2ea53 {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00095.WXS.N C3L-00095 LUAD WXS blood_normal CPT0003910002 CPT0003910002.WholeExome.RP-1303.bam 39096668759 BAM submitted_aligned CPTAC3 7080d591-3af7-44eb-963d-e9df4df9c776 494a271302d1ccae9ac1c880599bb753 {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00095.WXS.N.hg38 C3L-00095 LUAD WXS blood_normal CPT0003910002 758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 52870668721 BAM harmonized CPTAC3 e2c6dc65-722d-41fb-91ef-b4b968e0a846 23790503d0795e93e9cc912baaed3bfc {"aliquot_tag": "ALQ_dd4e5c04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00095.WXS.T C3L-00095 LUAD WXS tumor CPT0001660005 CPT0001660005.WholeExome.RP-1303.bam 30808445114 BAM submitted_aligned CPTAC3 771c46ef-bfd6-4017-8c96-fbaf565449b8 fa9875d7a89e5d1633935da74d97b89d {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00095.WXS.T.hg38 C3L-00095 LUAD WXS tumor CPT0001660005 e0e4eca2-5f90-4ae4-924f-4e5548af49b1_gdc_realn.bam 42441934601 BAM harmonized CPTAC3 114678a6-bb63-4c25-b546-1b595c70b199 ebc4c7aefeae6b8a34dfab9a56f08e03 {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.MethArray.Green.A C3L-00096 CCRCC Methylation_Array tissue_normal CPT0001190015 204930640122_R07C01_Grn.idat 13677965 IDAT Green NA CPTAC3 3e496b95-dc70-4992-9c13-62b562ff111a 62d9a1b41514950a4f88a3201546f254 {"aliquot_tag": "ALQ_118d2063", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.MethArray.Green.T C3L-00096 CCRCC Methylation_Array tumor CPT0001180005 201557560005_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 5fbb6b3c-5e06-4e00-a767-8716b85fe6b1 7bffc6d3585f07dea5d41cbd26568c72 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.MethArray.Red.A C3L-00096 CCRCC Methylation_Array tissue_normal CPT0001190015 204930640122_R07C01_Red.idat 13677965 IDAT Red NA CPTAC3 cedb2323-b350-4ba5-8120-10d3990c4a1f 589212220371a2e96718b810615d76fc {"aliquot_tag": "ALQ_118d2063", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.MethArray.Red.T C3L-00096 CCRCC Methylation_Array tumor CPT0001180005 201557560005_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 29cd4b14-cbb2-4e87-81ca-81eb935f8dba 5551bd488b819b1937475d21c1d711f8 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.miRNA-Seq.A.hg38 C3L-00096 CCRCC miRNA-Seq tissue_normal CPT0001190006 d2c260e2-32db-4c2b-a969-815c2b459e2d_mirnaseq_gdc_realn.bam 249887770 BAM harmonized CPTAC3 4a591f2b-ad51-4402-8808-daf56e1a56c7 45c91d4e5d2736158b64786fc851ad06 {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.miRNA-Seq.S27_L004_R1.A C3L-00096 CCRCC miRNA-Seq tissue_normal CPT0001190006 181108_UNC31-K00269_0163_BH23TVBBXY_ATTCCT_S27_L004_R1_001.unaln.bam 223167810 BAM S27_L004_R1 submitted_unaligned CPTAC3 dff2971b-03eb-4ced-a617-2eaf580f2437 2ba6f54cdbcc5ffcaa4357496cb4af3d {"aliquot_tag": "ALQ_919f4098", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.miRNA-Seq.S28_L004_R1.T C3L-00096 CCRCC miRNA-Seq tumor CPT0001180164 181113_UNC31-K00269_0164_AH23NNBBXY_TGACCA_S28_L004_R1_001.unaln.bam 185550467 BAM S28_L004_R1 submitted_unaligned CPTAC3 76500f41-b647-4092-b0b4-0ca3c7fa9472 9408b4511adc2f367a7b757bbd415e44 {"aliquot_tag": "ALQ_1569c5b5", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.miRNA-Seq.T.hg38 C3L-00096 CCRCC miRNA-Seq tumor CPT0001180164 b5ef2feb-6549-432b-a628-8250b520d2cf_mirnaseq_gdc_realn.bam 199587198 BAM harmonized CPTAC3 da7ebade-e4ea-49b5-b272-f1bdd504040b f69e3e82df3f08914f0320251e40915c {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.RNA-Seq.chimeric.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.chimeric.gdc_realn.bam 67692167 BAM chimeric harmonized CPTAC3 d2ff2306-5912-4d22-ac7c-da4e05742f1e eff37ba26b4ad358684ad3fc2139b410 {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.RNA-Seq.chimeric.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.chimeric.gdc_realn.bam 82634280 BAM chimeric harmonized CPTAC3 dab8ad89-89ab-479b-b851-0ea8739aeda7 5c6ebfe8cbea1d1beb16d9d2f87a7f22 {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.RNA-Seq.genomic.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.genomic.gdc_realn.bam 8903811157 BAM genomic harmonized CPTAC3 7d1b3868-a378-484b-b9cc-91f34c3a4843 60d2ca5571de4c02e75f876b769dd054 {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.RNA-Seq.genomic.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.genomic.gdc_realn.bam 8094021973 BAM genomic harmonized CPTAC3 3492d4e2-3b65-4f60-ae21-2084541a75af 0445d4b7b59bf1f244448c8cca4a22bc {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.RNA-Seq.S12_L003_R1.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R1_001.fastq.gz 3934187560 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 1fc59c06-7a5e-4273-b073-bddfa348fc5f 7b8be9dd298c3687df82dbc6e0e4cb1f {"aliquot_tag": "ALQ_1569c5b5", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.RNA-Seq.S12_L003_R2.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R2_001.fastq.gz 4273651772 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 baac50d4-1206-4e90-939e-0d9f286b75b1 7e680fd356291a9055f66e3d57a36386 {"aliquot_tag": "ALQ_1569c5b5", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.RNA-Seq.S54_L007_R1.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R1_001.fastq.gz 4229200870 FASTQ S54_L007_R1 submitted_unaligned CPTAC3 05b22361-64fa-4d7c-b888-fbfb1a9497e7 1275cae63cc7a947dd153d33233da4fc {"aliquot_tag": "ALQ_919f4098", "sample": "S54", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.RNA-Seq.S54_L007_R2.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R2_001.fastq.gz 4608215924 FASTQ S54_L007_R2 submitted_unaligned CPTAC3 2710d6dc-f819-4609-a304-f11578f515bf 7007a39cafe51e02692a79d284a8a788 {"aliquot_tag": "ALQ_919f4098", "sample": "S54", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.RNA-Seq.transcriptome.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.transcriptome.gdc_realn.bam 11002737747 BAM transcriptome harmonized CPTAC3 556163f5-82c3-4578-8f1a-3301eccd7e8a 3c273bfae6ffa1c8b16bff47fc4a36ab {"aliquot_tag": "ALQ_919f4098", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.RNA-Seq.transcriptome.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.transcriptome.gdc_realn.bam 12439367049 BAM transcriptome harmonized CPTAC3 d9053e6c-fd29-4349-a188-153977637e0a 1b0c3412e03c1c6c8c6d425894a2ba7c {"aliquot_tag": "ALQ_1569c5b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.WGS.A C3L-00096 CCRCC WGS tissue_normal CPT0001190009 CPT0001190009.WholeGenome.RP-1303.bam 49655475100 BAM submitted_aligned CPTAC3 b8cc1af2-6169-4a55-9fab-c787da5eae88 ba7110894d1afccde38b0b18891b861e {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.WGS.A.hg38 C3L-00096 CCRCC WGS tissue_normal CPT0001190009 c36837e7-a86b-4c6e-a7c0-e2315113b895_wgs_gdc_realn.bam 73767913835 BAM harmonized CPTAC3 7a8ecb6f-2da6-4c97-9a19-461bfee6e613 41b98fcf0d55a3aecb75f4e9483cbbf8 {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.WGS.N C3L-00096 CCRCC WGS blood_normal CPT0000050163 CPT0000050163.WholeGenome.RP-1303.bam 141867274277 BAM submitted_aligned CPTAC3 b613ddb7-bcef-436c-994e-566efe855479 1f34e0f11c0a74ef97ba8ac49ca94093 {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00096.WGS.N.hg38 C3L-00096 CCRCC WGS blood_normal CPT0000050163 5baa4fd3-9295-4f75-aab3-d51914261e92_gdc_realn.bam 208979691335 BAM harmonized CPTAC3 adf140e7-5132-4424-8a14-b9228f6a6ba3 af9a2cd5ed34fe96764f93f475587e31 {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00096.WGS.T C3L-00096 CCRCC WGS tumor CPT0001180005 CPT0001180005.WholeGenome.RP-1303.bam 132696403988 BAM submitted_aligned CPTAC3 272a4d54-38b1-4256-bc82-43a79234f44d 03137730b9c9ff16e8f5b70692e226e2 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.WGS.T.hg38 C3L-00096 CCRCC WGS tumor CPT0001180005 18e6a6e7-b473-42cb-adb5-e8745643eca7_gdc_realn.bam 190587716178 BAM harmonized CPTAC3 3fca41a9-e1bc-45d1-a872-6492b6ed987f 7cdaccf64a32b5b1e8ae97a16eec282b {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.WXS.A C3L-00096 CCRCC WXS tissue_normal CPT0001190009 CPT0001190009.WholeExome.RP-1303.bam 31810715459 BAM submitted_aligned CPTAC3 742c58c3-1bb1-4e07-a907-a8833f489ddd 22c9896a6fc188eb9b7ad55cfaee7c88 {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.WXS.A.hg38 C3L-00096 CCRCC WXS tissue_normal CPT0001190009 c36837e7-a86b-4c6e-a7c0-e2315113b895_wxs_gdc_realn.bam 43238144672 BAM harmonized CPTAC3 b723ccbb-b596-41fb-b66a-c9162570c47b c5b207197f6ba061fc211c454fad597e {"aliquot_tag": "ALQ_1205d09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00096.WXS.N C3L-00096 CCRCC WXS blood_normal CPT0000050163 CPT0000050163.WholeExome.RP-1303.bam 32504220524 BAM submitted_aligned CPTAC3 aed88bf8-1f5f-4a30-b8d8-165aed86cf6a 3a86ea1b1ba85d15bda377468df688bb {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00096.WXS.N.hg38 C3L-00096 CCRCC WXS blood_normal CPT0000050163 5baa4fd3-9295-4f75-aab3-d51914261e92_gdc_realn.bam 45054793814 BAM harmonized CPTAC3 50248eda-8eb5-4967-9473-d22c2836d494 a60b498965c5a5f30161e68031cf800a {"aliquot_tag": "ALQ_1eb64cb6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00096.WXS.T C3L-00096 CCRCC WXS tumor CPT0001180005 CPT0001180005.WholeExome.RP-1303.bam 30098206397 BAM submitted_aligned CPTAC3 be116ae4-b6a1-4110-8857-5c0bd861fa95 f34d9eb47f7420efe17d9c7f7696565f {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00096.WXS.T.hg38 C3L-00096 CCRCC WXS tumor CPT0001180005 18e6a6e7-b473-42cb-adb5-e8745643eca7_gdc_realn.bam 40124524024 BAM harmonized CPTAC3 a68482ba-c3df-48e7-80a9-b647285738e0 b576197f6fc3304a2c27e76ec1c39fb4 {"aliquot_tag": "ALQ_35f63892", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.MethArray.Green.T C3L-00097 CCRCC Methylation_Array tumor CPT0000780005 201557540007_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a36fc07e-2777-49a7-aff5-2919972fa007 250a6a05ce4abbac63efc48cfd0e9dab {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.MethArray.Red.T C3L-00097 CCRCC Methylation_Array tumor CPT0000780005 201557540007_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 5612e893-1c4f-4802-946c-a2551dbddc62 85cf2067af6c45816f95c8f9cf753650 {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.miRNA-Seq.A.hg38 C3L-00097 CCRCC miRNA-Seq tissue_normal CPT0000790006 0ac4c094-7fc0-4adc-9e93-9e806fcbcfa7_mirnaseq_gdc_realn.bam 181489717 BAM harmonized CPTAC3 d52c12fc-54fb-408a-896f-cfc761a33c38 abd54f691ced6a2e514b3a9f244dba67 {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.miRNA-Seq.S28_L004_R1.A C3L-00097 CCRCC miRNA-Seq tissue_normal CPT0000790006 181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L004_R1_001.unaln.bam 165603445 BAM S28_L004_R1 submitted_unaligned CPTAC3 ac6d63d7-899e-49ad-aa9a-129e6f6746da 98953252ba25bfd4b158b1d9c44ad91b {"aliquot_tag": "ALQ_e1b1a831", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.miRNA-Seq.S29_L004_R1.T C3L-00097 CCRCC miRNA-Seq tumor CPT0000780008 181113_UNC31-K00269_0164_AH23NNBBXY_ACAGTG_S29_L004_R1_001.unaln.bam 221981603 BAM S29_L004_R1 submitted_unaligned CPTAC3 c1cb1b6c-6984-48be-9006-fc1efa5fed3c c90433116d8381b69e55cc8d7257cb74 {"aliquot_tag": "ALQ_3b69ac86", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.miRNA-Seq.T.hg38 C3L-00097 CCRCC miRNA-Seq tumor CPT0000780008 5c85a222-d95f-406a-b092-bd4e0ffa25e3_mirnaseq_gdc_realn.bam 250549538 BAM harmonized CPTAC3 8e519958-8088-4566-b02e-c1855018f77e 8b9d816db9aecdda7abac33d32bced0a {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.RNA-Seq.chimeric.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.chimeric.gdc_realn.bam 78263645 BAM chimeric harmonized CPTAC3 9db869a4-ff77-4733-9294-267c5238d9e1 037f08d1dec2586a480ef777724c85f7 {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.RNA-Seq.chimeric.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.chimeric.gdc_realn.bam 77406668 BAM chimeric harmonized CPTAC3 dc32b0e4-0697-4774-8a7c-930cb80bf29f 964ffddcfc7aa0cb79a330f73f0075ec {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.RNA-Seq.genomic.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.genomic.gdc_realn.bam 8581234203 BAM genomic harmonized CPTAC3 f96ae298-74b9-4833-9cc4-8edc1769e909 d946319ecea2e74bdc138b0882f4fec0 {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.RNA-Seq.genomic.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.genomic.gdc_realn.bam 7881393716 BAM genomic harmonized CPTAC3 b056f6dd-17eb-41a5-9bc0-e8767eea1f11 334c77202c1d43e402661dd9ebf44944 {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.RNA-Seq.S55_L007_R1.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R1_001.fastq.gz 4179767101 FASTQ S55_L007_R1 submitted_unaligned CPTAC3 60970db8-5749-434f-90fc-1719fd5f0e51 68baf44c9f1d096a18f9e6c2dc4a4317 {"aliquot_tag": "ALQ_e1b1a831", "sample": "S55", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.RNA-Seq.S55_L007_R2.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R2_001.fastq.gz 4400479017 FASTQ S55_L007_R2 submitted_unaligned CPTAC3 5adf9903-68ab-4d57-b95f-0dd015b64107 2b28d556bee0a0e3081572e2f06615f0 {"aliquot_tag": "ALQ_e1b1a831", "sample": "S55", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.RNA-Seq.S6_L002_R1.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R1_001.fastq.gz 4042629868 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 571dd95a-2c63-4c72-83a5-69539b2aa695 6744def6ff0c4113d3a268ee7c9a7010 {"aliquot_tag": "ALQ_3b69ac86", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.RNA-Seq.S6_L002_R2.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R2_001.fastq.gz 4453379412 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 89f65d1c-ba11-4ab8-8f06-16d32be9f046 06df2896bb1d9facb5934349fc428261 {"aliquot_tag": "ALQ_3b69ac86", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.RNA-Seq.transcriptome.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.transcriptome.gdc_realn.bam 10805118483 BAM transcriptome harmonized CPTAC3 fa1fd22f-f405-4ec4-9008-131eb4066ed4 b1c9d20b1300a94facdd36608738a34b {"aliquot_tag": "ALQ_e1b1a831", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.RNA-Seq.transcriptome.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.transcriptome.gdc_realn.bam 10624318545 BAM transcriptome harmonized CPTAC3 42392459-08b6-44a9-bce0-8e26d0bd795a 9e5d75aef87ddf7019e99e780e3248a6 {"aliquot_tag": "ALQ_3b69ac86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.WGS.A C3L-00097 CCRCC WGS tissue_normal CPT0000790009 CPT0000790009.WholeGenome.RP-1303.bam 59809713640 BAM submitted_aligned CPTAC3 8faa0733-ddb1-4ad5-a73f-fa578084cdee c78cd4a787145429925235add821af84 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.WGS.A.hg38 C3L-00097 CCRCC WGS tissue_normal CPT0000790009 48b8f26b-8c03-4bd1-b2b2-faa3bb812572_wgs_gdc_realn.bam 87059397330 BAM harmonized CPTAC3 a44eb75b-ad4d-4936-b608-43e0b16e3f8d eead10b31f9a58ab2f3ac4a518d4fd58 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.WGS.N C3L-00097 CCRCC WGS blood_normal CPT0003920002 CPT0003920002.WholeGenome.RP-1303.bam 131756190552 BAM submitted_aligned CPTAC3 5433e300-93a8-449d-8ba9-160bcb196f6f 2edafc910baa5f083e4b79a400b7f5db {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00097.WGS.N.hg38 C3L-00097 CCRCC WGS blood_normal CPT0003920002 22e96e0d-3a4f-4d28-8b86-6fb61dc9a36c_gdc_realn.bam 192876806971 BAM harmonized CPTAC3 2d0e7b52-dd4a-47df-a683-83787a34a37b d0718ef4aec720ee80b28295b6331aa2 {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00097.WGS.T C3L-00097 CCRCC WGS tumor CPT0000780005 CPT0000780005.WholeGenome.RP-1303.bam 176299402581 BAM submitted_aligned CPTAC3 927f5e23-ccc8-4506-8cc3-0dc96ecbb835 15b46c62f969ab724e94fec17677d4f3 {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.WGS.T.hg38 C3L-00097 CCRCC WGS tumor CPT0000780005 26de720a-1e1d-42bc-ad0d-db5c3608e135_gdc_realn.bam 256770133938 BAM harmonized CPTAC3 b552663a-44c6-406d-b92e-89169c004bde 92909735ebeda85df360722eb941dfac {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.WXS.A C3L-00097 CCRCC WXS tissue_normal CPT0000790009 CPT0000790009.WholeExome.RP-1303.bam 41467314077 BAM submitted_aligned CPTAC3 e689915d-b72e-4020-8c41-b30b970aa566 589340beb1867cbf6a36aa8d346bb0c1 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.WXS.A.hg38 C3L-00097 CCRCC WXS tissue_normal CPT0000790009 48b8f26b-8c03-4bd1-b2b2-faa3bb812572_wxs_gdc_realn.bam 56319375807 BAM harmonized CPTAC3 6e57dae7-55b5-4149-95af-c8880402d7a5 88ec37e59c90cdcf136a0646b08e6b07 {"aliquot_tag": "ALQ_710eb5a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00097.WXS.N C3L-00097 CCRCC WXS blood_normal CPT0003920002 CPT0003920002.WholeExome.RP-1303.bam 28493216928 BAM submitted_aligned CPTAC3 cccc16a4-62d7-42ea-bc72-9a3cdb09a7c7 621144431b5300b42f42f551eb2bd9b5 {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00097.WXS.N.hg38 C3L-00097 CCRCC WXS blood_normal CPT0003920002 22e96e0d-3a4f-4d28-8b86-6fb61dc9a36c_gdc_realn.bam 38133754641 BAM harmonized CPTAC3 2dc2e0f2-c333-4724-af7c-280bb6d2b49f 84e385d532c0687473e17e436d028ae5 {"aliquot_tag": "ALQ_9aee26d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00097.WXS.T C3L-00097 CCRCC WXS tumor CPT0000780005 CPT0000780005.WholeExome.RP-1303.bam 27453741366 BAM submitted_aligned CPTAC3 380eef21-597c-443c-9524-131eb34ff659 4240616deefb5fb9f302273920ab5cbe {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00097.WXS.T.hg38 C3L-00097 CCRCC WXS tumor CPT0000780005 26de720a-1e1d-42bc-ad0d-db5c3608e135_gdc_realn.bam 37851171228 BAM harmonized CPTAC3 9d384af7-2bd0-4cc2-bdb0-e982c3c9a7e6 539bd9c043c2a0c974ef2268cdf40d6e {"aliquot_tag": "ALQ_45d8d03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.MethArray.Green.T C3L-00098 UCEC Methylation_Array tumor CPT0000980005 201557560050_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d8f4e11f-3841-4ddc-a95e-908e667be3eb e51b8caf01da8f70b3d4e30e72c9c6e9 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.MethArray.Red.T C3L-00098 UCEC Methylation_Array tumor CPT0000980005 201557560050_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 f306d40f-3262-410e-9e42-c366c6c2aa44 20f27572aeb10a3c408b3d1e7c9a41f9 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.miRNA-Seq.S23_L002_R1.T C3L-00098 UCEC miRNA-Seq tumor CPT0000980008 181012_UNC32-K00270_0124_AH223CBBXY_CGATGT_S23_L002_R1_001.unaln.bam 226813996 BAM S23_L002_R1 submitted_unaligned CPTAC3 ee5705ae-5929-4a94-9097-150ae4aec4a0 08e4cb7ab60af5703efe7c41a4f462ba {"aliquot_tag": "ALQ_163cdf6", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.miRNA-Seq.T.hg38 C3L-00098 UCEC miRNA-Seq tumor CPT0000980008 4ed6514b-c3af-40ad-bc76-335362e9e910_mirnaseq_gdc_realn.bam 246051874 BAM harmonized CPTAC3 6bd195ba-3421-41e1-b9f2-19b8157cfbc6 4cccaa7d2cb85bd3766070be2f7fa430 {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.chimeric.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.chimeric.gdc_realn.bam 89471173 BAM chimeric harmonized CPTAC3 69d23c44-50f9-4595-addf-c8d4b41638a0 8f866ba20c0fd85b0f17a12e560a1ca4 {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.chimeric.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.chimeric.gdc_realn.bam 158981237 BAM chimeric harmonized CPTAC3 6b4bf932-37fa-42d9-ba11-7e8dc25337e2 7ea36228f151e758ee05983d1ae6446d {"aliquot_tag": "ALQ_e16e7311", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.genomic.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.genomic.gdc_realn.bam 6832199181 BAM genomic harmonized CPTAC3 58d19e37-dbb9-4b31-b59c-24171d22ead4 0b57b235c415ec7af02f1f1a83ad6d7a {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.genomic.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.genomic.gdc_realn.bam 7475631078 BAM genomic harmonized CPTAC3 792c3c1a-2cbc-4272-a41e-69084b5ee635 f5c874f198f8943044b8bfba76d65623 {"aliquot_tag": "ALQ_e16e7311", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.S49_R1.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R1_001.fastq.gz 5378348437 FASTQ S49_R1 submitted_unaligned CPTAC3 abf7cbc1-260e-44e6-a0c8-0aa0cc62e80d 29083cfa93b403547d4fed2f4b405e3e {"aliquot_tag": "ALQ_e16e7311", "sample": "S49", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.S49_R2.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R2_001.fastq.gz 5567821485 FASTQ S49_R2 submitted_unaligned CPTAC3 0d616095-baa8-4e12-a6ad-20182be762fb 8d40e10abc743b62aa0c96adbc25ca8a {"aliquot_tag": "ALQ_e16e7311", "sample": "S49", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.S8_L002_R1.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3242317433 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 31252ba9-e052-4b77-809a-f936379ae00c d12bc29c9f283bfe877878c9fe7a4f8f {"aliquot_tag": "ALQ_163cdf6", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.S8_L002_R2.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 3679125276 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 23be22ae-de50-4d74-a7c0-c890adbc662a 91261da7c4c761e5090993746de3e419 {"aliquot_tag": "ALQ_163cdf6", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.transcriptome.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.transcriptome.gdc_realn.bam 9909890732 BAM transcriptome harmonized CPTAC3 4100aed3-8776-45f6-bfcd-067a87ee2692 f86f6ff154da3d03505666b9f412e077 {"aliquot_tag": "ALQ_163cdf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.RNA-Seq.transcriptome.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.transcriptome.gdc_realn.bam 4506420849 BAM transcriptome harmonized CPTAC3 81cca721-b45a-4f6a-b739-73e5f104e239 1c3e922cc87392c1b9558d59cc076db8 {"aliquot_tag": "ALQ_e16e7311", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.WGS.N C3L-00098 UCEC WGS blood_normal CPT0003930002 CPT0003930002.WholeGenome.RP-1303.bam 134189724250 BAM submitted_aligned CPTAC3 4e396754-9ddd-446e-ba62-da919ae9346d 0a096fe6186ad9a33c2271a430c889a5 {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00098.WGS.N.hg38 C3L-00098 UCEC WGS blood_normal CPT0003930002 0f46b9b0-6bff-4156-b505-669d72cc9428_gdc_realn.bam 196155902904 BAM harmonized CPTAC3 385cdfe0-fbae-486f-b333-4a88d1209afb e54a0eeb5225ccdacbc5fcf66680e271 {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00098.WGS.T C3L-00098 UCEC WGS tumor CPT0000980005 CPT0000980005.WholeGenome.RP-1303.bam 148178993129 BAM submitted_aligned CPTAC3 113891b2-abb7-49a4-b0ce-6638a3a6a803 5eee33956e07eefd69d2e8745fe78e69 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.WGS.T.hg38 C3L-00098 UCEC WGS tumor CPT0000980005 40c0a0d3-bdfd-4fa1-9aaa-9e8c747cc53c_gdc_realn.bam 214161107684 BAM harmonized CPTAC3 a64c4b72-0517-431f-8128-3a89ad7b387c 72e7f0a8e03daf6104ed69ca41d04dde {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.WXS.N C3L-00098 UCEC WXS blood_normal CPT0003930002 CPT0003930002.WholeExome.RP-1303.bam 28527718611 BAM submitted_aligned CPTAC3 cf61e0c2-8026-4223-a45e-c92d7b52b31c 0989616554b966610f0678e0bccdf3d7 {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00098.WXS.N.hg38 C3L-00098 UCEC WXS blood_normal CPT0003930002 0f46b9b0-6bff-4156-b505-669d72cc9428_gdc_realn.bam 38415338585 BAM harmonized CPTAC3 b58bdcce-b807-4958-814d-3576dee3ae0c 4ff284f153b5aa7d4ecdba9f403da57d {"aliquot_tag": "ALQ_a78e0f64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00098.WXS.T C3L-00098 UCEC WXS tumor CPT0000980005 CPT0000980005.WholeExome.RP-1303.bam 34289383100 BAM submitted_aligned CPTAC3 9481cd37-140a-458d-980e-a06d3bc2f479 6bf4834b8534792a6371c9af6c5f9e71 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00098.WXS.T.hg38 C3L-00098 UCEC WXS tumor CPT0000980005 40c0a0d3-bdfd-4fa1-9aaa-9e8c747cc53c_gdc_realn.bam 46886822297 BAM harmonized CPTAC3 bdde9d09-6a54-46d9-985b-aaf95799f6f9 543c8fedcd3601de1e5cd560bc3889c8 {"aliquot_tag": "ALQ_7fd2b14b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.MethArray.Green.A C3L-00102 PDA Methylation_Array tissue_normal CPT0001750009 203561450102_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9adac64b-e82d-47e2-b373-630ad82db322 02240e3d3688875e1be0d59d561b2eb6 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.MethArray.Green.T C3L-00102 PDA Methylation_Array tumor CPT0001730005 201557560005_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a9955ace-38e9-4702-8e26-33de7bcb77ba 22e78ee7ca200ff723f6cc5c11a8c844 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.MethArray.Red.A C3L-00102 PDA Methylation_Array tissue_normal CPT0001750009 203561450102_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 aa3a3b61-f310-48ed-870a-4552fac08fa0 704fac8db3ce689fcc16d92fad1f868f {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.MethArray.Red.T C3L-00102 PDA Methylation_Array tumor CPT0001730005 201557560005_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 8f326e68-5fb8-4be3-8ae3-960bdc96f716 6aa7b4df3c6a39ffa6166b733dac8b18 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.miRNA-Seq.A.hg38 C3L-00102 PDA miRNA-Seq tissue_normal CPT0001750006 c054f27d-d76c-433d-86bf-45d781be2046_mirnaseq_gdc_realn.bam 250907245 BAM harmonized CPTAC3 a2f01a29-55b8-4538-9137-7c639b5c252e 108894c52cb13f90d23393a62a6a048c {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.miRNA-Seq.S1_L001_R1.A C3L-00102 PDA miRNA-Seq tissue_normal CPT0001750006 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 228262816 BAM S1_L001_R1 submitted_unaligned CPTAC3 0a0eb34b-06f3-4149-bc33-19034de3a754 e1f2b5c832428e7c1fad505a7d4e34cc {"aliquot_tag": "ALQ_82364e84", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.miRNA-Seq.S25_L002_R1.T C3L-00102 PDA miRNA-Seq tumor CPT0001730008 181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L002_R1_001.unaln.bam 271601291 BAM S25_L002_R1 submitted_unaligned CPTAC3 0a559dbf-a8cc-4b1e-94c3-b340c09dd5f3 90d6021e051e189fbced085e6387c558 {"aliquot_tag": "ALQ_eace9623", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.miRNA-Seq.T.hg38 C3L-00102 PDA miRNA-Seq tumor CPT0001730008 bc3b9beb-00c2-4c0e-b2f4-1046e4e3b1dd_mirnaseq_gdc_realn.bam 301265231 BAM harmonized CPTAC3 e4d8f63b-7b60-4052-9eec-cc2ae227c9a5 b3ab3beaecd8eb83a840cde465bb9a92 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.RNA-Seq.chimeric.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.chimeric.gdc_realn.bam 104705092 BAM chimeric harmonized CPTAC3 91c303ba-b5ed-4f99-a38c-a3b8b46a410f 727963cc0b882fd84244f8e1f0f2b685 {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.RNA-Seq.chimeric.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.chimeric.gdc_realn.bam 83795294 BAM chimeric harmonized CPTAC3 b4b32485-98ff-4b4a-b0ba-c61cbcfc432a ad1ceeca816d15357f5be1cfbf93d145 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.RNA-Seq.genomic.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.genomic.gdc_realn.bam 8957352819 BAM genomic harmonized CPTAC3 40379d81-a9bf-4007-9473-e4f61e16ffd0 7ae55470bb0004176d1d2924dd989ed7 {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.RNA-Seq.genomic.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.genomic.gdc_realn.bam 7910671087 BAM genomic harmonized CPTAC3 76df7299-0d2b-469c-9f26-1cb15bd287ae 72a77a8fe8d5c99f2885954c2d7d04b1 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.RNA-Seq.S3_L001_R1.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3735627356 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5002990e-a20d-4114-93ea-c5c09f148fed 6ccfcbbda9048c6855fd04cf631e2b32 {"aliquot_tag": "ALQ_eace9623", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.RNA-Seq.S3_L001_R2.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4168581145 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 2090faff-ade5-48df-a986-2d0902b1ee27 cd50fc4e06775135eaad276fa22335dc {"aliquot_tag": "ALQ_eace9623", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.RNA-Seq.S57_L007_R1.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R1_001.fastq.gz 4097212793 FASTQ S57_L007_R1 submitted_unaligned CPTAC3 893b0db2-7d98-4d74-af8c-93039af57455 73bdc2cd750d59951b8f3dc1d84a5e75 {"aliquot_tag": "ALQ_82364e84", "sample": "S57", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.RNA-Seq.S57_L007_R2.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R2_001.fastq.gz 4030560886 FASTQ S57_L007_R2 submitted_unaligned CPTAC3 f51f3a38-4291-448f-a064-3215b323e437 3422dbd2446fe4fedee4c76a772425e8 {"aliquot_tag": "ALQ_82364e84", "sample": "S57", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.RNA-Seq.transcriptome.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.transcriptome.gdc_realn.bam 10158982956 BAM transcriptome harmonized CPTAC3 84c7bb0f-c886-46bd-aff9-3bca2ba705ed df7265cce92a9d7ea821396ab4e7fd1f {"aliquot_tag": "ALQ_82364e84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.RNA-Seq.transcriptome.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.transcriptome.gdc_realn.bam 10482851004 BAM transcriptome harmonized CPTAC3 96eaabfd-4722-4dc1-b09a-cbd966daed5d 260be76070cb9d55435d5f09a510e608 {"aliquot_tag": "ALQ_eace9623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.Targeted.T C3L-00102 PDA Targeted_Sequencing tumor CPT0001730005_1 CPT0001730005_1.CustomSelection.RP-1303.PDO-18786.bam 4268012966 BAM submitted_aligned CPTAC3 1c61d872-d871-49aa-9984-438fbe98f2cb 66c9ae2df5a9d136514351be27592a40 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.Targeted.T.hg38 C3L-00102 PDA Targeted_Sequencing tumor CPT0001730005_1 f69943e2-7588-45ab-99ac-48cba7813919_targetedsequencing_gdc_realn.bam 6121886369 BAM harmonized CPTAC3 c53e8ccb-6690-45e1-9faa-7be8dd8f9afa 39a3858f58f1c6d20b5e8f0b0a656fa3 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.WGS.A C3L-00102 PDA WGS tissue_normal CPT0001750009 CPT0001750009.WholeGenome.RP-1303.bam 66038463582 BAM submitted_aligned CPTAC3 c282e4cc-9b90-4e2f-bfe8-46f57d297d56 f7233dd29e6f119a89dd04a77ed4a8af {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.WGS.A.hg38 C3L-00102 PDA WGS tissue_normal CPT0001750009 80eecb4d-bf1d-43a1-886e-8956ecdc3ff2_wgs_gdc_realn.bam 96382478336 BAM harmonized CPTAC3 f1c22ede-fa58-45ef-8a11-b6a82cd3426a 1d9d56a08b823d109ee3a001c25ae442 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.WGS.N C3L-00102 PDA WGS blood_normal CPT0003940002 CPT0003940002.WholeGenome.RP-1303.bam 135032952332 BAM submitted_aligned CPTAC3 fa76ec3d-27f0-483d-bf6c-02b6a156295e 93e3d70abb9904e66e89381a4c8275c9 {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00102.WGS.N.hg38 C3L-00102 PDA WGS blood_normal CPT0003940002 b6b55db6-b2f3-4d98-b1d1-3958bf5ae28f_gdc_realn.bam 198828339729 BAM harmonized CPTAC3 0c563d66-bde5-445d-9a7a-909b4fdb2d8e 3f12a9b315874345f70168e504d59843 {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00102.WGS.T C3L-00102 PDA WGS tumor CPT0001730005 CPT0001730005.WholeGenome.RP-1303.bam 185554298141 BAM submitted_aligned CPTAC3 e7486158-9dfc-45bf-8fc8-56bb3ead2eb3 4e506f21bc474da09483686740e759b0 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.WGS.T.hg38 C3L-00102 PDA WGS tumor CPT0001730005 945dbda3-ac53-448a-abd8-96ebc5c55b48_gdc_realn.bam 265771172683 BAM harmonized CPTAC3 f122b006-ac29-4911-bbfa-05d08b8f35d8 208b29f56fe64662c92a44ae9912603d {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.WXS.A C3L-00102 PDA WXS tissue_normal CPT0001750009 CPT0001750009.WholeExome.RP-1303.bam 51288812851 BAM submitted_aligned CPTAC3 b8aaea0b-bfe3-4319-b65e-80f4f29ffa91 4c255d281bda32496097ded43e0d86d3 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.WXS.A.hg38 C3L-00102 PDA WXS tissue_normal CPT0001750009 80eecb4d-bf1d-43a1-886e-8956ecdc3ff2_wxs_gdc_realn.bam 69626016273 BAM harmonized CPTAC3 780aabc7-c22a-4239-b14b-9146f0a36549 12a045acea09b5ed3204c810e605b743 {"aliquot_tag": "ALQ_12895315", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00102.WXS.N C3L-00102 PDA WXS blood_normal CPT0003940002 CPT0003940002.WholeExome.RP-1303.bam 35236879549 BAM submitted_aligned CPTAC3 f469e20d-116c-4571-8deb-15033354d93e 2012bb93a2930089e5befde5bf2a2a46 {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00102.WXS.N.hg38 C3L-00102 PDA WXS blood_normal CPT0003940002 b6b55db6-b2f3-4d98-b1d1-3958bf5ae28f_gdc_realn.bam 46868278690 BAM harmonized CPTAC3 a4c9d5ea-87f2-4812-bf9e-2a21e0fbd265 28583b43975aca196921a96e9d43af6b {"aliquot_tag": "ALQ_15aed374", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00102.WXS.T C3L-00102 PDA WXS tumor CPT0001730005_1 CPT0001730005_1.WholeExome.RP-1303.bam 58721280023 BAM submitted_aligned CPTAC3 e6f8a14f-3831-4d9d-81d4-c3d9856022c9 c89714266e0f3aeefb53f158cc825c25 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.WXS.T C3L-00102 PDA WXS tumor CPT0001730005 CPT0001730005.WholeExome.RP-1303.bam 38336812583 BAM submitted_aligned CPTAC3 92c53583-901c-4210-ae65-bab5f04f0e7e da50e9c354f2faecfed237799d49f605 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.WXS.T.hg38 C3L-00102 PDA WXS tumor CPT0001730005_1 f69943e2-7588-45ab-99ac-48cba7813919_wxs_gdc_realn.bam 79964414419 BAM harmonized CPTAC3 d96f32f9-dd16-40de-b0bc-57996f25b99c 0603b8789840e093cf87decfe08ef6c2 {"aliquot_tag": "ALQ_82396bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00102.WXS.T.hg38 C3L-00102 PDA WXS tumor CPT0001730005 945dbda3-ac53-448a-abd8-96ebc5c55b48_gdc_realn.bam 52210107073 BAM harmonized CPTAC3 e4e743cb-4e2d-4ef3-92e9-b6f538ded0c9 97b8b598ebabcdb4c813e6f6216798c1 {"aliquot_tag": "ALQ_947fea9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_605d6335.MethArray.Green.T C3L-00103 CCRCC Methylation_Array tumor CPT0000630006 204372030070_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c8b1652b-e7b5-48ae-bdd2-930be43ddaf9 3a95d2249f7abb2d7edc36fdd2a0c5b3 {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_605d6335.MethArray.Red.T C3L-00103 CCRCC Methylation_Array tumor CPT0000630006 204372030070_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 b3d1ac80-1afe-4638-a9a5-7565d3d2cf3b 1b398689a7e891ca17e98ce19160a3c2 {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_605d6335.WGS.T C3L-00103 CCRCC WGS tumor CPT0000630006 CPT0000630006.WholeGenome.RP-2158.bam 26175355835 BAM submitted_aligned CPTAC3 3155a7a2-6a20-4050-801c-2f63bb959f8b f36f440d866e41d8c2bd98bd76dd9ac6 {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_605d6335.WGS.T.hg38 C3L-00103 CCRCC WGS tumor CPT0000630006 3990afc0-9acf-48ba-aa21-633574e6e9ad_wgs_gdc_realn.bam 76347572564 BAM harmonized CPTAC3 151d2b72-87d1-47e1-b1dc-4a1d08b5eb11 62a85bf63b61b2de373cef528915ecde {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_605d6335.WXS.T C3L-00103 CCRCC WXS tumor CPT0000630006 CPT0000630006.WholeExome.RP-1303.bam 24686273415 BAM submitted_aligned CPTAC3 deadd118-a5ab-4f01-abbb-601a5892aec4 9c91ecdf23540ffc63b0ffe03bafd76f {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_605d6335.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000630006 3990afc0-9acf-48ba-aa21-633574e6e9ad_wxs_gdc_realn.bam 34533234282 BAM harmonized CPTAC3 17cf226b-45ff-41dc-b4c0-fc0604922886 cf5a41e3cbc8ac70884880b69aef909a {"aliquot_tag": "DUP_605d6335", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_8a5bb92.miRNA-Seq.S34_L002_R1.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000650008 200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L002_R1_001.unaln.bam 261660434 BAM S34_L002_R1 submitted_unaligned CPTAC3 73d38500-a837-4cf8-80f8-8e61a7b49a51 ad297c8c923db7437f27b05bf2f25ec0 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_8a5bb92.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000650008 827db034-8884-434e-b7a2-02e3ada31709_mirnaseq_gdc_realn.bam 297445843 BAM harmonized CPTAC3 399cee47-430f-4e12-987a-756b8023b6bd 2702ef33f20b37932762147bdaa1511a {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_8a5bb92.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.chimeric.gdc_realn.bam 68654935 BAM chimeric harmonized CPTAC3 16f7ccee-2955-4f90-b7b2-1c388c84b8f3 b2125d752c86cc3801dc5fb861a066c7 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_8a5bb92.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.genomic.gdc_realn.bam 7897833348 BAM genomic harmonized CPTAC3 e17249a9-6cc6-4c11-8514-85095964fa6d 0d658952661819bee94dc205bc563ba9 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_8a5bb92.RNA-Seq.S19_L005_R1.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3714824575 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 4c0823f5-5c3b-4dff-9ae1-40a8210c1fc3 90f1b27ac35446f74e735895beabe104 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_8a5bb92.RNA-Seq.S19_L005_R2.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4342999494 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 fad68f1e-fa0e-4d25-a822-600c8a10afbb 61c15974438a5117c6d1c536bb60d3b8 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_8a5bb92.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.transcriptome.gdc_realn.bam 9700070197 BAM transcriptome harmonized CPTAC3 1895731f-76b8-4ff8-bf35-ad6b31e86054 a3314ebcdd616581488cc465da4570a3 {"aliquot_tag": "DUP_8a5bb92", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_ef1d9695.MethArray.Green.T C3L-00103 CCRCC Methylation_Array tumor CPT0000650006 204367490030_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1c3e5948-a555-47cc-821c-6ba3f483cda1 1726b54053742517a8a435761183e849 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_ef1d9695.MethArray.Red.T C3L-00103 CCRCC Methylation_Array tumor CPT0000650006 204367490030_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 236d7ab1-b6c7-466f-b39a-296ef1f3aa74 5785ed159188887f3851d3b2031e3cc2 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_ef1d9695.WGS.T C3L-00103 CCRCC WGS tumor CPT0000650006 CPT0000650006.WholeGenome.RP-2158.bam 32733454062 BAM submitted_aligned CPTAC3 0441718a-d113-4eb6-8882-8f054940c50a 05329f422ca1e63a932e185b419b1867 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_ef1d9695.WGS.T.hg38 C3L-00103 CCRCC WGS tumor CPT0000650006 6961ae42-bba0-4ef9-826d-13a2c00f863b_wgs_gdc_realn.bam 95061854424 BAM harmonized CPTAC3 280371ef-ef49-4f81-8651-6a98085bffbd 12cc0458f294026cda2661d38b7b1ab5 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_ef1d9695.WXS.T C3L-00103 CCRCC WXS tumor CPT0000650006 CPT0000650006.WholeExome.RP-1303.bam 28893546665 BAM submitted_aligned CPTAC3 eb8ef027-b6fa-40b8-a8fc-4a90b6fdc308 45170d8708140c7c2fc47b629544d186 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_ef1d9695.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000650006 6961ae42-bba0-4ef9-826d-13a2c00f863b_wxs_gdc_realn.bam 39013840060 BAM harmonized CPTAC3 4a89b7c5-1ee4-44d8-88b8-2d56d7e848f4 70ab102a7eba690cbe16c3c53a0dbd91 {"aliquot_tag": "DUP_ef1d9695", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_f0e27ea4.miRNA-Seq.S2_L006_R1.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000630009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATCACG_S2_L006_R1_001.unaln.bam 351081478 BAM S2_L006_R1 submitted_unaligned CPTAC3 267cdf14-4d04-4ebf-96a2-0e851d84846b 44659ea4f601d2e23cc090ff49e0f33a {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_f0e27ea4.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000630009 ef153bbc-c4a8-4364-930e-4d81d66878d2_mirnaseq_gdc_realn.bam 385914460 BAM harmonized CPTAC3 0a7a342a-b203-41a2-bf34-47edf859fe66 60305608aab6683698615d9917517070 {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_f0e27ea4.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.chimeric.gdc_realn.bam 175081205 BAM chimeric harmonized CPTAC3 2351b299-dd15-4471-bf13-60c794e52a40 6b3497cc29b2875f8db8f11aad84fbff {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_f0e27ea4.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.genomic.gdc_realn.bam 11771985515 BAM genomic harmonized CPTAC3 d7630516-45ab-4c5c-ab0f-50d6baf7e076 c0bc882bc7500de8f06c84fc0ee8fa9c {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_f0e27ea4.RNA-Seq.S29_L004_R1.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R1_001.fastq.gz 5570232704 FASTQ S29_L004_R1 submitted_unaligned CPTAC3 7dbef68a-aff2-402b-9665-24668fab5908 e8ebfe940dbeb0bb503f4e77fa52aabf {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_f0e27ea4.RNA-Seq.S29_L004_R2.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R2_001.fastq.gz 6449461194 FASTQ S29_L004_R2 submitted_unaligned CPTAC3 7f6794c3-542b-481f-9bfe-dd4781ec781c 2a7d5c3fbce2fb1963a8e8aeca20b1ea {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.DUP_f0e27ea4.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.transcriptome.gdc_realn.bam 14801677590 BAM transcriptome harmonized CPTAC3 551fb0b4-0289-4679-bd68-1337c7812345 016a906d5a57315d9dd5bec128198b8c {"aliquot_tag": "DUP_f0e27ea4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.MethArray.Green.A C3L-00103 CCRCC Methylation_Array tissue_normal CPT0000660014 204930640120_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3ca87442-f422-4dde-9b07-344f30a6c71f 78816ccd18d772fa3f6e542cb90817a4 {"aliquot_tag": "ALQ_5fa8bc28", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.MethArray.Green.T C3L-00103 CCRCC Methylation_Array tumor CPT0000640008 202184990069_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e5910ae5-bb8f-46c6-a1e8-b8da04dcbbc6 5bc97fd5c55b0cae9549144093da10f3 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.MethArray.Red.A C3L-00103 CCRCC Methylation_Array tissue_normal CPT0000660014 204930640120_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 e9418052-7457-42ca-9ec1-e49836a661b1 f636cc4b7f91f372e69979ccd1697019 {"aliquot_tag": "ALQ_5fa8bc28", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.MethArray.Red.T C3L-00103 CCRCC Methylation_Array tumor CPT0000640008 202184990069_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 a7436b52-d702-4260-a6fc-a81ff78e3bf0 21245f965c48b097a942e65360685903 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.miRNA-Seq.A.hg38 C3L-00103 CCRCC miRNA-Seq tissue_normal CPT0000660006 975c97b1-d946-4d40-8e1b-627fa5b359e4_mirnaseq_gdc_realn.bam 259414329 BAM harmonized CPTAC3 2becc6b3-ad3b-4e52-b0c0-5281fc22275c f0820ecb779d58437b702611f4cdddf4 {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.miRNA-Seq.S21_L003_R1.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000640005 181113_UNC31-K00269_0164_AH23NNBBXY_TCATTC_S21_L003_R1_001.unaln.bam 181353878 BAM S21_L003_R1 submitted_unaligned CPTAC3 7326dbe9-1164-434b-a9f2-fc1a2a954d32 6f461eb7149390a4d29d005f8ee4e168 {"aliquot_tag": "ALQ_4b74ee9f", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.miRNA-Seq.S30_L004_R1.A C3L-00103 CCRCC miRNA-Seq tissue_normal CPT0000660006 181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L004_R1_001.unaln.bam 233112878 BAM S30_L004_R1 submitted_unaligned CPTAC3 61ea1844-e06e-4fb4-87ce-8d14e25427d3 3667e6e5270f59888ffe11b885cf6228 {"aliquot_tag": "ALQ_a8bdec45", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000640005 ac4fb97a-7871-49d7-a46c-28033dff66af_mirnaseq_gdc_realn.bam 207346466 BAM harmonized CPTAC3 93fe19d1-56af-4f1b-8a4a-af3201a20654 71b06296a692b4e8885f316645cfe559 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.RNA-Seq.chimeric.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.chimeric.gdc_realn.bam 76593002 BAM chimeric harmonized CPTAC3 8714f2bb-8baf-49d0-8a69-302ccd0ec3fb 2dc750fed6e00387c39b6dacd961dbbe {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.chimeric.gdc_realn.bam 98645682 BAM chimeric harmonized CPTAC3 d4f2978b-042b-45bc-a95a-8f6c693461cb c72e5584de5295d70ff3a9de144196e6 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.RNA-Seq.genomic.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.genomic.gdc_realn.bam 7554731421 BAM genomic harmonized CPTAC3 bed49e6e-f261-496a-9048-1344983fa8d0 5cd48106a89b724b56a9d21329671c5f {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.genomic.gdc_realn.bam 9216583164 BAM genomic harmonized CPTAC3 14cf0a4f-2608-4401-9a59-5a8a6b4c3337 f391d7a608f10b4349c465ff36f720a5 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.RNA-Seq.S56_L007_R1.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R1_001.fastq.gz 3754354855 FASTQ S56_L007_R1 submitted_unaligned CPTAC3 7583c79b-d6d8-4669-b558-0aba2ba67054 bf840fc5bdff84842dce0e0b4fcb06cc {"aliquot_tag": "ALQ_a8bdec45", "sample": "S56", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.RNA-Seq.S56_L007_R2.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R2_001.fastq.gz 4014415458 FASTQ S56_L007_R2 submitted_unaligned CPTAC3 de108ae0-884f-4c53-a4ab-40681988ef5c 709f0274b47d76dce3281d7bd07dadb3 {"aliquot_tag": "ALQ_a8bdec45", "sample": "S56", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.RNA-Seq.S7_L002_R1.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 4211540733 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 0432802d-9155-45bd-90b8-8472a758eaa1 bd8f9e5aaa9f273eb3809656319ab627 {"aliquot_tag": "ALQ_4b74ee9f", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.RNA-Seq.S7_L002_R2.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 4462888273 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 a37d45d8-1c52-4fd2-906f-d70282c859ec 7a58098bfcbf3697639cd568dd0d3b8e {"aliquot_tag": "ALQ_4b74ee9f", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.RNA-Seq.transcriptome.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.transcriptome.gdc_realn.bam 8856601514 BAM transcriptome harmonized CPTAC3 694339b8-6cf4-4955-adf0-ef4f125c4400 8680231f395525b04f707122b7c4e16e {"aliquot_tag": "ALQ_a8bdec45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.transcriptome.gdc_realn.bam 10480913434 BAM transcriptome harmonized CPTAC3 63ce5123-4400-4aa1-a277-a5d6ce5cc6dd 7afea0aa2fd511333c1c7f04bcf3c6d0 {"aliquot_tag": "ALQ_4b74ee9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.WGS.A C3L-00103 CCRCC WGS tissue_normal CPT0000660009 CPT0000660009.WholeGenome.RP-1303.bam 54363989068 BAM submitted_aligned CPTAC3 b9e66dbc-c399-4024-acdf-8491a493dfe9 309ac08e7b1b007766d90b45ed14046a {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.WGS.A.hg38 C3L-00103 CCRCC WGS tissue_normal CPT0000660009 5e34b40b-83f7-4eb1-b42e-ffde801a6a4c_wgs_gdc_realn.bam 79788034613 BAM harmonized CPTAC3 2bb97d5f-bcf6-4ecb-89ab-3f2f9a7f0e64 6d0d680149f94817d5d4c98adf73cabd {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.WGS.N C3L-00103 CCRCC WGS blood_normal CPT0003850002 CPT0003850002.WholeGenome.RP-1303.bam 79382126911 BAM submitted_aligned CPTAC3 290f5cee-c397-4dbc-bfdc-b9a0aaedea27 56f18e3eebae4b6f82dbeb7705552cba {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00103.WGS.N.hg38 C3L-00103 CCRCC WGS blood_normal CPT0003850002 b35e7696-f8f2-4fdb-a2e7-e6b4842a4674_gdc_realn.bam 117135673578 BAM harmonized CPTAC3 62957d62-cf92-4457-84e0-a0c74dffd73f 28e06b003272f3f30da4ee6c4b77ca90 {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00103.WGS.T C3L-00103 CCRCC WGS tumor CPT0000640008 CPT0000640008.WholeGenome.RP-1303.bam 68572746909 BAM submitted_aligned CPTAC3 5a5e9f3e-2631-4ff2-8009-48d549d98114 c13f21092db0150c9542c4cccc37233a {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.WGS.T.hg38 C3L-00103 CCRCC WGS tumor CPT0000640008 c5a3c455-b1f3-4125-a6f5-401385ab2720_gdc_realn.bam 101056769537 BAM harmonized CPTAC3 1bc9301e-0f79-401d-9a81-e96a5675005e 4cdabbeecd850714fcfe287fb21c372e {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.WXS.A C3L-00103 CCRCC WXS tissue_normal CPT0000660009 CPT0000660009.WholeExome.RP-1303.bam 38364823448 BAM submitted_aligned CPTAC3 f5d342bd-ba86-47a5-9f9c-0c9fe650d3cf 5d908d47ce9e26716bef237e85cd4866 {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.WXS.A.hg38 C3L-00103 CCRCC WXS tissue_normal CPT0000660009 5e34b40b-83f7-4eb1-b42e-ffde801a6a4c_wxs_gdc_realn.bam 52639862514 BAM harmonized CPTAC3 1bcb4996-7610-4417-b648-bd9c7a34427e 23bf88201fad4be34640708442b749f9 {"aliquot_tag": "ALQ_3802f1d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00103.WXS.N C3L-00103 CCRCC WXS blood_normal CPT0003850002 CPT0003850002.WholeExome.RP-1303.bam 22186536977 BAM submitted_aligned CPTAC3 a5553301-99b3-478a-906f-2ae2158f9522 68a5a6707680b74140822cc1abb0eb70 {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00103.WXS.N.hg38 C3L-00103 CCRCC WXS blood_normal CPT0003850002 b35e7696-f8f2-4fdb-a2e7-e6b4842a4674_gdc_realn.bam 30381554017 BAM harmonized CPTAC3 be832dc4-0367-4d5a-aa34-b0dfafecaa92 66d2fa61d62c4898aea096bbde65ff95 {"aliquot_tag": "ALQ_e3922961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00103.WXS.T C3L-00103 CCRCC WXS tumor CPT0000640008 CPT0000640008.WholeExome.RP-1303.bam 24599619481 BAM submitted_aligned CPTAC3 327cded6-b729-4655-b620-b0dbb32912e7 9a557c35c9b7d0b0a0eb44d8e9846743 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00103.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000640008 c5a3c455-b1f3-4125-a6f5-401385ab2720_gdc_realn.bam 33390644310 BAM harmonized CPTAC3 01c91555-2c8b-462a-9814-236ea632e22f a7c494fad70fb0ca406291eaca330976 {"aliquot_tag": "ALQ_35c59222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.MethArray.Green.T C3L-00104 GBM Methylation_Array tumor CPT0092440009 202234360029_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c09365e6-ee32-4785-8d0c-fd22eab3a45e 7084c250e23b3bd1162385e57f8376c5 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.MethArray.Red.T C3L-00104 GBM Methylation_Array tumor CPT0092440009 202234360029_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 7a4dc34c-3dd7-4542-bd37-fe0afcb41075 85142311a89ca96785e492e9fe5cf668 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.miRNA-Seq.S10_L007_R1.T C3L-00104 GBM miRNA-Seq tumor CPT0092440006 180724_UNC32-K00270_0106_BHWK3MBBXX_CATGGC_S10_L007_R1_001.unaln.bam 267308905 BAM S10_L007_R1 submitted_unaligned CPTAC3 7efe0301-9ab5-4db5-9d92-6f0f4a564277 a632b5e01e4d74e47153e950a63085e1 {"aliquot_tag": "ALQ_1765142c", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.miRNA-Seq.T.hg38 C3L-00104 GBM miRNA-Seq tumor CPT0092440006 9d826494-858e-442a-ab02-cada2c0339fe_mirnaseq_gdc_realn.bam 306396698 BAM harmonized CPTAC3 b9664e75-7a85-4fa3-8a26-58a6468b3f78 e0c824397189b1894afc0b15d47ec89f {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.RNA-Seq.chimeric.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.chimeric.gdc_realn.bam 59604666 BAM chimeric harmonized CPTAC3 75b03c0d-de34-4c81-a33c-cef6b5401a93 678a6ae5078629d093ee238a8d1d4b47 {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.RNA-Seq.genomic.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.genomic.gdc_realn.bam 10833956033 BAM genomic harmonized CPTAC3 964b3452-2c6d-4b43-b091-8692fcfc39b5 23dd61a3b6546156e19a2097a2060eb2 {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.RNA-Seq.S18_L005_R1.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4795357750 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 a140b753-b805-40f4-90c0-25f726357d04 d1b67d538688145dc8dc7067843e6044 {"aliquot_tag": "ALQ_1765142c", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.RNA-Seq.S18_L005_R2.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 5281943263 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 ebd6b26a-bbec-485a-9700-9a26cd0c2402 6342a9ca11a2c8a3a20381683539e56c {"aliquot_tag": "ALQ_1765142c", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.RNA-Seq.transcriptome.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.transcriptome.gdc_realn.bam 11125515114 BAM transcriptome harmonized CPTAC3 0ce6ab22-36f3-4622-a67c-83722a1cc526 8cc801d8986a4ef43487205d7afa371b {"aliquot_tag": "ALQ_1765142c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.WGS.N C3L-00104 GBM WGS blood_normal CPT0093800002 CPT0093800002.WholeGenome.RP-1303.bam 66334077045 BAM submitted_aligned CPTAC3 73826e51-96a5-4216-aaf6-ae08fb5c3b49 e64d09a7a550f06482cbdaae9e80cd55 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00104.WGS.N.hg38 C3L-00104 GBM WGS blood_normal CPT0093800002 27b12d40-946d-4fc4-b336-b0edd9bcaa3c_wgs_gdc_realn.bam 96242353366 BAM harmonized CPTAC3 b671161a-35d8-41ec-af05-22e5d61df42a fc7cce96191e17bfba8c2104f1a931b8 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00104.WGS.T C3L-00104 GBM WGS tumor CPT0092440009 CPT0092440009.WholeGenome.RP-1303.bam 60975481512 BAM submitted_aligned CPTAC3 1a14cdb3-fc86-4cdf-9a9f-0f38768cb4ef 8b8e379fcd3ea5321c43fac56c568ca2 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.WGS.T.hg38 C3L-00104 GBM WGS tumor CPT0092440009 d36cf415-f716-4e50-a949-a06459cd5277_wgs_gdc_realn.bam 86365683446 BAM harmonized CPTAC3 d1be16bb-3b12-40f2-ac23-99fabddc615a e1de7a759d3f098737b206f69a6cfdca {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.WXS.N C3L-00104 GBM WXS blood_normal CPT0093800002 CPT0093800002.WholeExome.RP-1303.bam 31862370299 BAM submitted_aligned CPTAC3 ad5fe8fb-d478-4522-820f-4062170a3ce2 c7e5345ae2623f1b948dedf39cd15077 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00104.WXS.N.hg38 C3L-00104 GBM WXS blood_normal CPT0093800002 27b12d40-946d-4fc4-b336-b0edd9bcaa3c_wxs_gdc_realn.bam 42838462277 BAM harmonized CPTAC3 cd8ff448-91ea-44b2-9293-0c89f3b6c7a3 ff5559e623604cb69ebc1fcdab1c19f6 {"aliquot_tag": "ALQ_343dbd3a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00104.WXS.T C3L-00104 GBM WXS tumor CPT0092440009 CPT0092440009.WholeExome.RP-1303.bam 41370405160 BAM submitted_aligned CPTAC3 ae33607f-44c1-44b3-8e2a-fab785a71555 6fd25335a6a25156c3bef1dab0ac6266 {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00104.WXS.T.hg38 C3L-00104 GBM WXS tumor CPT0092440009 d36cf415-f716-4e50-a949-a06459cd5277_wxs_gdc_realn.bam 56263243160 BAM harmonized CPTAC3 fc6acfc5-97f2-405f-9fb7-7f1b6c1dce00 c1e862119e35fa33149230c7cd84e4ad {"aliquot_tag": "ALQ_87da09bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.MethArray.Green.T C3L-00136 UCEC Methylation_Array tumor CPT0000730008 202176290095_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bbe84fe1-79c6-45e6-b51e-b20f9f58d174 faaaed586d6ae48ef039d1411ef0186c {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.MethArray.Red.T C3L-00136 UCEC Methylation_Array tumor CPT0000730008 202176290095_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 55d23eb1-6473-448b-b804-19afccf1d0cd 246da85d7552f6cb8e9f69d8e63f2cbf {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.miRNA-Seq.S34_L002_R1.T C3L-00136 UCEC miRNA-Seq tumor CPT0000730005 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L002_R1_001.unaln.bam 244139774 BAM S34_L002_R1 submitted_unaligned CPTAC3 da03388e-40db-4ed3-bb7e-50c3b2306c16 978ab4784a5681d60629d8f057f66f85 {"aliquot_tag": "ALQ_3208e12a", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.miRNA-Seq.T.hg38 C3L-00136 UCEC miRNA-Seq tumor CPT0000730005 4369c1ee-e3bb-4298-9fe1-827c0fba9686_mirnaseq_gdc_realn.bam 268710737 BAM harmonized CPTAC3 504ca518-486f-41f1-b5de-cbae8b527af9 90e2927043f89d4d2d90faeb3444346d {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.chimeric.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.chimeric.gdc_realn.bam 175666620 BAM chimeric harmonized CPTAC3 a98b98a7-bc10-4e73-9865-4124fb75cbd2 8a6c6f0ab116748c822bf664832a0048 {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.chimeric.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.chimeric.gdc_realn.bam 269598174 BAM chimeric harmonized CPTAC3 78842188-850d-4e2d-93b3-0dd82060768b 6a6aca5dd8b153970dcdb995a173da2a {"aliquot_tag": "ALQ_298efc61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.genomic.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.genomic.gdc_realn.bam 9272924749 BAM genomic harmonized CPTAC3 53fc9e31-2468-418b-8c98-fdb7666e6054 2adea2f36c6dc07086db2a0257060e2d {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.genomic.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.genomic.gdc_realn.bam 11235437711 BAM genomic harmonized CPTAC3 30306281-27ff-49fc-8bf7-7e3b3cf6b838 68ead6d0cc1b9bd23eff4cb807b454f5 {"aliquot_tag": "ALQ_298efc61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.S10_L003_R1.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R1_001.fastq.gz 4224214315 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 df0e2942-c702-4135-81a0-fbec4439d753 10ec1edb237bcdf561196c4ad4af50eb {"aliquot_tag": "ALQ_3208e12a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.S10_L003_R2.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R2_001.fastq.gz 4672327244 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 4e1ad404-4646-4828-91b9-e3c35a4ce505 be0593f8b1d1d93f0bf703554a40a6af {"aliquot_tag": "ALQ_3208e12a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.S44_R1.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R1_001.fastq.gz 6629829146 FASTQ S44_R1 submitted_unaligned CPTAC3 1553b506-f502-4b5b-a7c9-e40af087a0b2 49a91f2118739b0e4e432a6ae53b318b {"aliquot_tag": "ALQ_298efc61", "sample": "S44", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.S44_R2.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R2_001.fastq.gz 6881683965 FASTQ S44_R2 submitted_unaligned CPTAC3 6565b68d-d783-4345-8e65-399ddce5cd26 8bfa5fe786c8871f07846699459692d4 {"aliquot_tag": "ALQ_298efc61", "sample": "S44", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.transcriptome.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.transcriptome.gdc_realn.bam 9940078016 BAM transcriptome harmonized CPTAC3 685522d2-ca12-44de-8ead-63ad2bff0b24 b89a9f0885347cd89891d129447ceacc {"aliquot_tag": "ALQ_3208e12a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.RNA-Seq.transcriptome.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.transcriptome.gdc_realn.bam 7793206924 BAM transcriptome harmonized CPTAC3 09f381fa-96f3-41bd-9793-9106df966350 0925fde68037946778a2abc6a9234d52 {"aliquot_tag": "ALQ_298efc61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.WGS.N C3L-00136 UCEC WGS blood_normal CPT0003860002 CPT0003860002.WholeGenome.RP-1303.bam 62399756235 BAM submitted_aligned CPTAC3 5a4abbc1-e0fb-441b-9d0a-1d52ba000b9a 6cd815872e7347b4c49ad5d52dbfbe59 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00136.WGS.N.hg38 C3L-00136 UCEC WGS blood_normal CPT0003860002 2a17380f-bcb1-4de3-8934-af1d4b914892_gdc_realn.bam 90461500957 BAM harmonized CPTAC3 df7dc177-6120-49ae-9046-fffbeed04583 0dcfadb09e3d2a15cb225497de5bba76 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00136.WGS.T C3L-00136 UCEC WGS tumor CPT0000730008 CPT0000730008.WholeGenome.RP-1303.bam 68745944247 BAM submitted_aligned CPTAC3 04d5974a-d29b-44f0-a707-11fa0c67e3b0 698ae074161617677e28efbffb8e2b95 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.WGS.T.hg38 C3L-00136 UCEC WGS tumor CPT0000730008 0da07c96-e95e-45df-b12f-8c745696f271_gdc_realn.bam 99707787740 BAM harmonized CPTAC3 9cb2d2f8-a700-4dbf-bc69-cb34274209b9 77328573a907cabc609ae1d4f8d81607 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.WXS.N C3L-00136 UCEC WXS blood_normal CPT0003860002 CPT0003860002.WholeExome.RP-1303.bam 25291505137 BAM submitted_aligned CPTAC3 d837ac33-bb34-43ee-9b1e-4474ed7a2e11 38363f6e3b0acc599f8699cac40084b3 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00136.WXS.N.hg38 C3L-00136 UCEC WXS blood_normal CPT0003860002 2a17380f-bcb1-4de3-8934-af1d4b914892_gdc_realn.bam 34634548427 BAM harmonized CPTAC3 27465b6e-6b30-429d-9e0b-cac09c0a8f91 8fdac56d42b1b3a5f0c38c48d9f7cbc2 {"aliquot_tag": "ALQ_a43253b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00136.WXS.T C3L-00136 UCEC WXS tumor CPT0000730008 CPT0000730008.WholeExome.RP-1303.bam 23972211476 BAM submitted_aligned CPTAC3 6f7512c3-23ab-42ae-855c-c27bc12b1304 b1d93dbcedc194f58e9c0c9121c5c438 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00136.WXS.T.hg38 C3L-00136 UCEC WXS tumor CPT0000730008 0da07c96-e95e-45df-b12f-8c745696f271_gdc_realn.bam 32954610799 BAM harmonized CPTAC3 5fc17a22-c109-4f25-8902-a7d9b7642915 9c25d99b8282fc8ad1eb26a8508d5c23 {"aliquot_tag": "ALQ_4cb99d97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.MethArray.Green.T C3L-00137 UCEC Methylation_Array tumor CPT0002010008 202184900149_R01C01_Grn.idat 13676256 IDAT Green NA CPTAC3 7c8e6110-aaf4-493a-b649-98f314bb1190 ff394664b432fdd6f23e6d21cb09ee53 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.MethArray.Red.T C3L-00137 UCEC Methylation_Array tumor CPT0002010008 202184900149_R01C01_Red.idat 13676256 IDAT Red NA CPTAC3 cbb5af60-8eee-4d59-804b-325d00d5bfec 35fe0b0f21e220197f62abdf237438f6 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.miRNA-Seq.S35_L002_R1.T C3L-00137 UCEC miRNA-Seq tumor CPT0002010005 181012_UNC32-K00270_0124_AH223CBBXY_AGTTCC_S35_L002_R1_001.unaln.bam 284600384 BAM S35_L002_R1 submitted_unaligned CPTAC3 4644ebff-133e-4c08-a7ee-a57888d4acf0 f95a96deccc91a13cebe2cd72b736c7d {"aliquot_tag": "ALQ_c25293db", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.miRNA-Seq.T.hg38 C3L-00137 UCEC miRNA-Seq tumor CPT0002010005 75ac0619-947a-427b-a53f-71e121a7ec8f_mirnaseq_gdc_realn.bam 310978156 BAM harmonized CPTAC3 436ca6d8-561c-4ac3-8077-30d1aa510e0d cdd53adfa9360f2c9e524156c1700b14 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.chimeric.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.chimeric.gdc_realn.bam 111661327 BAM chimeric harmonized CPTAC3 c0c4168b-aa72-43d4-bd3b-88448f1bc2a9 3b8b17c9ece1cc2da127c458e94c9928 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.chimeric.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.chimeric.gdc_realn.bam 90356480 BAM chimeric harmonized CPTAC3 28b1e297-b833-40fd-8185-a477c4d05d93 e7be30e5ab401c8017e94af84cc2a48b {"aliquot_tag": "ALQ_14eed5d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.genomic.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.genomic.gdc_realn.bam 7612430365 BAM genomic harmonized CPTAC3 cf4cc61c-5abc-4329-bad3-fd4fcca47f5c e8483ebe6c8c82c6f2033e8e66990e97 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.genomic.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.genomic.gdc_realn.bam 4523089566 BAM genomic harmonized CPTAC3 46e4de25-8450-4523-89b0-df1c6c38385f d76ff2e2c50320a3e09b7ee107d93a5e {"aliquot_tag": "ALQ_14eed5d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.S12_L003_R1.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R1_001.fastq.gz 3659451903 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 8fcdd6a1-a7c7-41b5-8b44-e41f2237b236 c009ef4a718199e56b76b314b6252819 {"aliquot_tag": "ALQ_c25293db", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.S12_L003_R2.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R2_001.fastq.gz 3840298846 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 2bea607d-6eb2-4583-90d7-7823a3d8a572 7264544de78960e1773bb35f652fb4bf {"aliquot_tag": "ALQ_c25293db", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.S92_R1.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R1_001.fastq.gz 2473873691 FASTQ S92_R1 submitted_unaligned CPTAC3 4bb31dc9-9c0d-4032-a05c-10997413d28d 5d551e696736fb3eb8b398cccf421ff6 {"aliquot_tag": "ALQ_14eed5d1", "sample": "S92", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.S92_R2.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R2_001.fastq.gz 2521759872 FASTQ S92_R2 submitted_unaligned CPTAC3 b3448565-fb30-4f54-a941-ecae99962a3c 9af4e5313ae1916bf0b5975ed14387a1 {"aliquot_tag": "ALQ_14eed5d1", "sample": "S92", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.transcriptome.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.transcriptome.gdc_realn.bam 8146343649 BAM transcriptome harmonized CPTAC3 5ef83376-8d2d-4e0a-b00e-2d91055b9e28 a38961ce7edc46a01dc2802243d5c7c0 {"aliquot_tag": "ALQ_c25293db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.RNA-Seq.transcriptome.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.transcriptome.gdc_realn.bam 2109065484 BAM transcriptome harmonized CPTAC3 ff0ded32-92b7-496e-b118-6629dd80e594 9c177dc1784db7bf3cb4e31827b9078b {"aliquot_tag": "ALQ_14eed5d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.WGS.N C3L-00137 UCEC WGS blood_normal CPT0003870002 CPT0003870002.WholeGenome.RP-1303.bam 59288908302 BAM submitted_aligned CPTAC3 1dc96ac6-f13c-421b-8cc6-68d58d4e740c 67c64d41efaf035653e96fbae2319415 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00137.WGS.N.hg38 C3L-00137 UCEC WGS blood_normal CPT0003870002 552d7534-1fd1-490b-8751-9dff1bf55569_gdc_realn.bam 86049366669 BAM harmonized CPTAC3 3183b3b5-5fdf-4f74-928e-7493bd04c1eb 412f5e349680da4215538cf003320448 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00137.WGS.T C3L-00137 UCEC WGS tumor CPT0002010008 CPT0002010008.WholeGenome.RP-1303.bam 63923614074 BAM submitted_aligned CPTAC3 09368818-a40e-486e-9fa4-789a50ea0afd 77c613ebbee6db766b556aa5fb904a05 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.WGS.T.hg38 C3L-00137 UCEC WGS tumor CPT0002010008 6b8b5928-258f-4f93-9e52-516db4562c2d_gdc_realn.bam 93619436588 BAM harmonized CPTAC3 be294530-6817-4729-b01c-e2845ddabf79 82f9a6104193106a109be36f438eeca4 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.WXS.N C3L-00137 UCEC WXS blood_normal CPT0003870002 CPT0003870002.WholeExome.RP-1303.bam 21412104249 BAM submitted_aligned CPTAC3 3df85f07-ff4f-467f-aba1-12c26b93d210 f8d848142f5e13227eeff1b9a92e63d9 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00137.WXS.N.hg38 C3L-00137 UCEC WXS blood_normal CPT0003870002 552d7534-1fd1-490b-8751-9dff1bf55569_gdc_realn.bam 29560881189 BAM harmonized CPTAC3 d5a11391-8b84-4be2-8a8e-62d1e646b786 e18b8d08c4f912024ec8c517e2171d65 {"aliquot_tag": "ALQ_99527a01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00137.WXS.T C3L-00137 UCEC WXS tumor CPT0002010008 CPT0002010008.WholeExome.RP-1303.bam 34185650145 BAM submitted_aligned CPTAC3 7c411bd7-7536-4f0b-9ae9-0522c5888e35 1082139e92d67862eee05db52504ef24 {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00137.WXS.T.hg38 C3L-00137 UCEC WXS tumor CPT0002010008 6b8b5928-258f-4f93-9e52-516db4562c2d_gdc_realn.bam 46556851624 BAM harmonized CPTAC3 24d0c8fa-2bb4-465b-96f7-680566a44c2f c3668448ad3b67eff00c2464e058fd9a {"aliquot_tag": "ALQ_bce3ef66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.MethArray.Green.T C3L-00139 UCEC Methylation_Array tumor CPT0001850005 201557560005_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 cb62464e-ad33-4639-8792-319bc26bc562 726530f84d24e09aa30f3e963345bc08 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.MethArray.Red.T C3L-00139 UCEC Methylation_Array tumor CPT0001850005 201557560005_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 fd16e330-9ef3-42fc-85f7-791612a2a0a0 31521fd80b9817ee82ffd9a4a3a4dd3c {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.miRNA-Seq.S27_L002_R1.T C3L-00139 UCEC miRNA-Seq tumor CPT0001850008 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L002_R1_001.unaln.bam 289948718 BAM S27_L002_R1 submitted_unaligned CPTAC3 df7fd901-8ef2-4d72-9e1b-108dbf4d1c39 7efc9cd0865709ff73c3aa42bed2e969 {"aliquot_tag": "ALQ_94d8d156", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.miRNA-Seq.T.hg38 C3L-00139 UCEC miRNA-Seq tumor CPT0001850008 c11f3a98-b4e3-4323-882a-10ca43c5bbef_mirnaseq_gdc_realn.bam 313021111 BAM harmonized CPTAC3 1ec286c9-2013-489e-955b-ca46f413f278 1619bf13678b2fdd27da45224bf43b46 {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.chimeric.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.chimeric.gdc_realn.bam 107371273 BAM chimeric harmonized CPTAC3 0ddfbffa-bc3f-4443-b29e-86af7d423392 629e90443a81de28c7c571b51740bb64 {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.chimeric.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.chimeric.gdc_realn.bam 240722743 BAM chimeric harmonized CPTAC3 69123dcb-aa0e-41ab-a0db-a4a36e9fd3ca 23c1658888e971f244b4b7204995dabb {"aliquot_tag": "ALQ_6e2e86b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.genomic.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.genomic.gdc_realn.bam 8354592829 BAM genomic harmonized CPTAC3 3e33dc26-ec91-497e-8e25-c3ceb2b49b72 18c52f45717f8ef16caa2bd4d275f5f5 {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.genomic.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.genomic.gdc_realn.bam 11072108238 BAM genomic harmonized CPTAC3 cabe9716-5bae-452c-ae7b-da0166a75f28 e9875cc63f4483ea49638e23e2622519 {"aliquot_tag": "ALQ_6e2e86b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.S1_L001_R1.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4174922373 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 7785d5a1-a60d-41f9-86f3-e4ebc100704c 685efdd279536e1199088a3dda3f9e9a {"aliquot_tag": "ALQ_94d8d156", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.S1_L001_R2.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4628430585 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 90ced367-0342-4739-93b2-4b1a4af800c4 160e900b66558d503da084fd6a46d424 {"aliquot_tag": "ALQ_94d8d156", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.S32_R1.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R1_001.fastq.gz 6140390107 FASTQ S32_R1 submitted_unaligned CPTAC3 39beb660-c454-472e-ba02-0cd8b7fa200c b0bee4991162326e9fae8d0b44039007 {"aliquot_tag": "ALQ_6e2e86b1", "sample": "S32", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.S32_R2.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R2_001.fastq.gz 6349933131 FASTQ S32_R2 submitted_unaligned CPTAC3 408d7d83-438d-4766-843d-7675fc0860ea d317bc0847480fe86036b4a090cf9a84 {"aliquot_tag": "ALQ_6e2e86b1", "sample": "S32", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.transcriptome.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.transcriptome.gdc_realn.bam 9728983723 BAM transcriptome harmonized CPTAC3 1ceb9e47-84ff-4b0e-9bcc-aaff32d03022 86321e186a34b9c554d072eec520f84d {"aliquot_tag": "ALQ_94d8d156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.RNA-Seq.transcriptome.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.transcriptome.gdc_realn.bam 5026049957 BAM transcriptome harmonized CPTAC3 fbbfebbf-ae9a-4bc7-acf7-ecfd9758bde9 45eef9f4884db1410eedaf26902a0c43 {"aliquot_tag": "ALQ_6e2e86b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.WGS.N C3L-00139 UCEC WGS blood_normal CPT0003950002 CPT0003950002.WholeGenome.RP-1303.bam 136523255484 BAM submitted_aligned CPTAC3 c2c55bf8-07d6-4aeb-9170-e1cc2d2d62b5 0d514f28a8fbf15fce7d56ed39937aaa {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00139.WGS.N.hg38 C3L-00139 UCEC WGS blood_normal CPT0003950002 f72de443-e927-4cbf-a81d-3c906af657db_gdc_realn.bam 196412539714 BAM harmonized CPTAC3 eaab07a2-6162-4605-a1ba-8ff3a0bebb60 961dccc950b8be247a26dfa2246aa50c {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00139.WGS.T C3L-00139 UCEC WGS tumor CPT0001850005 CPT0001850005.WholeGenome.RP-1303.bam 136209044545 BAM submitted_aligned CPTAC3 e61d5d13-7a19-4187-981e-18c1afcd1a85 2b3748571fad2a48f4adbc2d9f9923c1 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.WGS.T.hg38 C3L-00139 UCEC WGS tumor CPT0001850005 41bf607b-596b-4c43-9cd5-f245cf6e15fe_gdc_realn.bam 195288370394 BAM harmonized CPTAC3 e8a2f8dd-5e48-4ebe-a47f-b933e330fd60 a3d1c8f769198212ffa5a54fdac52a73 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.WXS.N C3L-00139 UCEC WXS blood_normal CPT0003950002 CPT0003950002.WholeExome.RP-1303.bam 27148390008 BAM submitted_aligned CPTAC3 0b6c6926-2144-4a6d-adf3-8e91775ab83c a1e099a561464d2c6b844fd640820186 {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00139.WXS.N.hg38 C3L-00139 UCEC WXS blood_normal CPT0003950002 f72de443-e927-4cbf-a81d-3c906af657db_gdc_realn.bam 36915211881 BAM harmonized CPTAC3 3e395930-3001-49bf-95ca-7c96e0204b57 c79101c61b4e5e08735575ac3bc1ba92 {"aliquot_tag": "ALQ_28cefac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00139.WXS.T C3L-00139 UCEC WXS tumor CPT0001850005 CPT0001850005.WholeExome.RP-1303.bam 38996148189 BAM submitted_aligned CPTAC3 b38279e5-8876-4c84-a1eb-7a4c215c5b63 438617b003c54b1069deb56dce9d654a {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00139.WXS.T.hg38 C3L-00139 UCEC WXS tumor CPT0001850005 41bf607b-596b-4c43-9cd5-f245cf6e15fe_gdc_realn.bam 53476418428 BAM harmonized CPTAC3 fb433f9d-bb8a-41e3-a5a0-997b16abd0fe 134a64d26b0b48f7e6af2e99f5babca7 {"aliquot_tag": "ALQ_ea69adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.MethArray.Green.A C3L-00140 LUAD Methylation_Array tissue_normal CPT0001810009 203027390078_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 24df4264-23c1-444d-929b-d50d1981fd1d 3c14ea212f3d5f30b74ca658d4981e30 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.MethArray.Green.T C3L-00140 LUAD Methylation_Array tumor CPT0001800005 201557560056_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e5815762-c027-4598-8f8f-491a68fea85d 21bf909344a966a7b2844b9f84a1fe65 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.MethArray.Red.A C3L-00140 LUAD Methylation_Array tissue_normal CPT0001810009 203027390078_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 64713670-5947-47b2-bd77-d3c111c9e8c9 2c3b8d40ec74245adc617e5a73debebf {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.MethArray.Red.T C3L-00140 LUAD Methylation_Array tumor CPT0001800005 201557560056_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 099483f9-6e51-45ef-928e-c4379ed7483a 6b6a20c0b1f8fb64d023223fcaf0e826 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.miRNA-Seq.A.hg38 C3L-00140 LUAD miRNA-Seq tissue_normal CPT0001810006 c097d901-143b-4ea4-bb0b-240fbe6bc862_mirnaseq_gdc_realn.bam 285628232 BAM harmonized CPTAC3 d28c6862-f37e-4e9b-9cc9-41aa2ec5157a 42c5503061fcbb3acf940acfebb59b10 {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.miRNA-Seq.S26_L002_R1.T C3L-00140 LUAD miRNA-Seq tumor CPT0001800008 181012_UNC32-K00270_0124_AH223CBBXY_ACAGTG_S26_L002_R1_001.unaln.bam 235880297 BAM S26_L002_R1 submitted_unaligned CPTAC3 a7009a8d-b48a-459c-81f7-e15971fd493a 08dcd112c9fba8835b3c806e03cf7625 {"aliquot_tag": "ALQ_5c385e26", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.miRNA-Seq.S28_L008_R1.A C3L-00140 LUAD miRNA-Seq tissue_normal CPT0001810006 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L008_R1_001.unaln.bam 261668762 BAM S28_L008_R1 submitted_unaligned CPTAC3 c9b8b2a9-4fd8-4061-a442-9c2ea10577de a83deaf6ecf9f07a23db32db17b8684b {"aliquot_tag": "ALQ_86e05a91", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.miRNA-Seq.T.hg38 C3L-00140 LUAD miRNA-Seq tumor CPT0001800008 3f67f903-8a57-48c9-aa0e-893412ed7cbb_mirnaseq_gdc_realn.bam 260201510 BAM harmonized CPTAC3 9df1d4ed-80aa-45d3-a0db-dfbc1c021a6a 9a2631ced61503f080e0e4a8486d6c10 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.RNA-Seq.chimeric.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.chimeric.gdc_realn.bam 117389400 BAM chimeric harmonized CPTAC3 b7920d02-c9a1-4ca5-8e50-087fb93d372b e74bf0fd22d6f5e41b69860a72c6ea34 {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.RNA-Seq.chimeric.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.chimeric.gdc_realn.bam 75470455 BAM chimeric harmonized CPTAC3 0f76a2e8-989c-450d-8600-5127c7fcc773 8eb563c994adfd9951a8250fc1d4a608 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.RNA-Seq.genomic.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.genomic.gdc_realn.bam 7301326470 BAM genomic harmonized CPTAC3 c3cfc7fb-bca6-44e5-98d3-4155b1cb83c0 efede67a5bcc5458735c5fba81841194 {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.RNA-Seq.genomic.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.genomic.gdc_realn.bam 8138447938 BAM genomic harmonized CPTAC3 149a23ec-044f-472c-8ec1-97c4567135c9 139f1c404f329a93d9732bd3804cc7e7 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.RNA-Seq.S2_L001_R1.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 3960123527 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 84aeb05a-3f3e-4ef9-9ef5-85bd7a955626 0105a3319f5b8fb0ded08e10ad7ef8db {"aliquot_tag": "ALQ_5c385e26", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.RNA-Seq.S2_L001_R2.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4439192184 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 7bd80abf-7ebf-475a-a875-e75809deada5 3c2483b293b6b483331fdcb7b6d5a91a {"aliquot_tag": "ALQ_5c385e26", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.RNA-Seq.S5_L002_R1.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R1_001.fastq.gz 3535142168 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 c22122d5-c707-4b0a-873b-03bafa9d6373 9c9e92db4f169af477887e07c19feab9 {"aliquot_tag": "ALQ_86e05a91", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.RNA-Seq.S5_L002_R2.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R2_001.fastq.gz 3822989925 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 48e9e1aa-da46-4ef8-8bb3-849c1e096850 889a044f9506aa166fed6d97523748e5 {"aliquot_tag": "ALQ_86e05a91", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.RNA-Seq.transcriptome.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.transcriptome.gdc_realn.bam 9271734756 BAM transcriptome harmonized CPTAC3 accd7efa-5523-4480-a8bc-1fd3163368fc 5ba4bbc7190789d01393edab64ed1a7d {"aliquot_tag": "ALQ_86e05a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.RNA-Seq.transcriptome.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.transcriptome.gdc_realn.bam 11583695064 BAM transcriptome harmonized CPTAC3 f10d0d29-2675-419c-b5b6-37fc19a2e310 eac5b541283b97a5f100ee77934cb129 {"aliquot_tag": "ALQ_5c385e26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.WGS.A C3L-00140 LUAD WGS tissue_normal CPT0001810009 CPT0001810009.WholeGenome.RP-1303.bam 52698744240 BAM submitted_aligned CPTAC3 d64d4ac4-c440-4bcf-8a64-4f7eeae51bbd 64dbbd61d8fa6f6f22796665570170e9 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.WGS.A.hg38 C3L-00140 LUAD WGS tissue_normal CPT0001810009 65540895-ccaa-40a2-ae4d-912f37356c1a_wgs_gdc_realn.bam 78009533362 BAM harmonized CPTAC3 a199b1e5-5139-4543-a8e4-fcfcebf60775 2cddb592b162dfbed58b7ca8bb1579a9 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.WGS.N C3L-00140 LUAD WGS blood_normal CPT0003960002 CPT0003960002.WholeGenome.RP-1303.bam 166874637864 BAM submitted_aligned CPTAC3 36882fe1-105b-41d9-a7ab-3f3c078c514a caab3024403180772c370c020649d928 {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00140.WGS.N.hg38 C3L-00140 LUAD WGS blood_normal CPT0003960002 d47d42c5-c6c1-4788-b66f-9e4eb2854c67_gdc_realn.bam 241077411568 BAM harmonized CPTAC3 0fafff35-2e4c-4f6e-8140-d839961a8379 d782912694c759bf7c3505be065ca474 {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00140.WGS.T C3L-00140 LUAD WGS tumor CPT0001800005 CPT0001800005.WholeGenome.RP-1303.bam 144252768053 BAM submitted_aligned CPTAC3 3be1750c-8327-47c1-aa09-94103dd50fcd 65c18767dd806c221bae4b77e34a00c9 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.WGS.T.hg38 C3L-00140 LUAD WGS tumor CPT0001800005 abd00977-e5b2-4ea2-9840-a0cbcc03e13c_gdc_realn.bam 208638607142 BAM harmonized CPTAC3 3848ef0d-faab-4e25-8922-159ce847fc23 5884da89a53b78a3508c126ae2309b8d {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.WXS.A C3L-00140 LUAD WXS tissue_normal CPT0001810009 CPT0001810009.WholeExome.RP-1303.bam 32340521211 BAM submitted_aligned CPTAC3 969b5dd2-b189-4f3d-a787-bd62f49eead7 9a7075afcaad21c3b59f6a91f744c5cd {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.WXS.A.hg38 C3L-00140 LUAD WXS tissue_normal CPT0001810009 65540895-ccaa-40a2-ae4d-912f37356c1a_wxs_gdc_realn.bam 43647007086 BAM harmonized CPTAC3 0c0313ce-2eb6-4ef7-b0d1-bd56323aba09 79ca94d30b9fd7076a71b895d63ea641 {"aliquot_tag": "ALQ_165f4700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00140.WXS.N C3L-00140 LUAD WXS blood_normal CPT0003960002 CPT0003960002.WholeExome.RP-1303.bam 32695746940 BAM submitted_aligned CPTAC3 b904410c-1fd2-4bb0-8009-5c13e58af1d4 c06da917ffa9b38f41e9334a9a44feed {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00140.WXS.N.hg38 C3L-00140 LUAD WXS blood_normal CPT0003960002 d47d42c5-c6c1-4788-b66f-9e4eb2854c67_gdc_realn.bam 44171055452 BAM harmonized CPTAC3 fe45ef91-129f-46ac-93b0-35a2c5dcd72d c910dfb62bb9a80cffd5033d41121927 {"aliquot_tag": "ALQ_6f6e8014", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00140.WXS.T C3L-00140 LUAD WXS tumor CPT0001800005 CPT0001800005.WholeExome.RP-1303.bam 29442643314 BAM submitted_aligned CPTAC3 be64f624-92d7-4757-b82f-66ffb1b35ed1 44f674c50573464baafb69eef105daa6 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00140.WXS.T.hg38 C3L-00140 LUAD WXS tumor CPT0001800005 abd00977-e5b2-4ea2-9840-a0cbcc03e13c_gdc_realn.bam 40943771958 BAM harmonized CPTAC3 0e90cce2-5f92-42fb-a908-20009bbcd4a0 56175fd4e6b5a28ec258a1b64e3c6168 {"aliquot_tag": "ALQ_2289229b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.MethArray.Green.T C3L-00143 UCEC Methylation_Array tumor CPT0001910012 201557560050_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c2c32dad-6099-42e8-9973-ab5f20d483ed 3a86dad74e0938dc02a239e2c4c0feda {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.MethArray.Red.T C3L-00143 UCEC Methylation_Array tumor CPT0001910012 201557560050_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 e5cceaf8-5555-4c76-996b-fd528b4db562 2cf03521ac3413c61571e49ca29a98c9 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.miRNA-Seq.S28_L002_R1.T C3L-00143 UCEC miRNA-Seq tumor CPT0001910008 181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L002_R1_001.unaln.bam 249275022 BAM S28_L002_R1 submitted_unaligned CPTAC3 f2254efa-2cbc-4b04-b8bb-e9bb070e2f31 63ac8d415b094a3db4e010fd59ba084e {"aliquot_tag": "ALQ_aa04a433", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.miRNA-Seq.T.hg38 C3L-00143 UCEC miRNA-Seq tumor CPT0001910008 861eae2d-bd5e-403c-babf-f7555093434d_mirnaseq_gdc_realn.bam 280086138 BAM harmonized CPTAC3 b340f64d-954f-4d24-9a84-b191d7811a4b 921fdf3c0c18d50f927390f2e8da8b53 {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.chimeric.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.chimeric.gdc_realn.bam 51352905 BAM chimeric harmonized CPTAC3 34b84b15-62e6-4122-92f5-d99a5d017e2f ea9cf55871025d1e4a2385f0c1680d47 {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.chimeric.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.chimeric.gdc_realn.bam 261111897 BAM chimeric harmonized CPTAC3 f10dfb3b-9686-41f9-a8cd-7301eb9f4ede 299b6d38b4e028ef48d859c46b876c94 {"aliquot_tag": "ALQ_d11e38d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.genomic.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.genomic.gdc_realn.bam 7045068204 BAM genomic harmonized CPTAC3 2f222b61-da36-4714-bc07-031f55557c67 ab4d6f65d6b03ca7c2272a856435237f {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.genomic.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.genomic.gdc_realn.bam 11869301324 BAM genomic harmonized CPTAC3 b5b88846-22aa-4d49-b490-79b77807abbe cb02fa95d3bde1311a098890bd138b0e {"aliquot_tag": "ALQ_d11e38d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.S4_L001_R1.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3552566535 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 6412838b-2f70-4b14-a6ee-3c7baca09fb0 1ddb4365965318c7d264d91d7d67860b {"aliquot_tag": "ALQ_aa04a433", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.S4_L001_R2.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3901719535 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 5d0a26e0-2739-4f38-9350-c685b44911d3 5477ff74d86c35fea3c93c1f862e1b8b {"aliquot_tag": "ALQ_aa04a433", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.S79_R1.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R1_001.fastq.gz 7457668481 FASTQ S79_R1 submitted_unaligned CPTAC3 01750b81-0d8b-4e20-97c8-5f0b9187fb22 b45c11f5e6e4654a9d65025c33f9276f {"aliquot_tag": "ALQ_d11e38d0", "sample": "S79", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.S79_R2.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R2_001.fastq.gz 7778507933 FASTQ S79_R2 submitted_unaligned CPTAC3 28cd52a0-bd1f-498b-a9f3-e8127475b8bd 393f2fc66b4598f5324e1cfe4e57475f {"aliquot_tag": "ALQ_d11e38d0", "sample": "S79", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.transcriptome.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.transcriptome.gdc_realn.bam 8263952666 BAM transcriptome harmonized CPTAC3 18404ddf-3ff3-4e0c-a4b3-fd80ff89373f fad98e7a896fc01fe6e8e8711c2df657 {"aliquot_tag": "ALQ_aa04a433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.RNA-Seq.transcriptome.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.transcriptome.gdc_realn.bam 6161381906 BAM transcriptome harmonized CPTAC3 3a6787f9-2ba0-4e35-9633-8eef881efa00 7ed7a3c85e98b74ba8a16b3582df00db {"aliquot_tag": "ALQ_d11e38d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.WGS.N C3L-00143 UCEC WGS blood_normal CPT0003970002 CPT0003970002.WholeGenome.RP-1303.bam 138410437612 BAM submitted_aligned CPTAC3 686e9641-ea5a-490c-b3ca-4373e0e6a76b 476cb8af9a6ffa7f48972486618caa1a {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00143.WGS.N.hg38 C3L-00143 UCEC WGS blood_normal CPT0003970002 c043b586-b3c2-4a81-a4f3-ccc22a2ec00d_gdc_realn.bam 200359369959 BAM harmonized CPTAC3 d4c330b5-d7f2-4f29-9002-e10479caa5ad e306de77507c37f3872e79ec7664c427 {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00143.WGS.T C3L-00143 UCEC WGS tumor CPT0001910012 CPT0001910012.WholeGenome.RP-1303.bam 128638627228 BAM submitted_aligned CPTAC3 f9ce1adc-bd1f-4a2e-89b2-5f30c1a76ac8 e61e966ed26bcd3b8492b1941807a647 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.WGS.T.hg38 C3L-00143 UCEC WGS tumor CPT0001910012 791db96f-984d-4482-bd0c-5691bef0b600_gdc_realn.bam 187360532420 BAM harmonized CPTAC3 699ff6b6-296d-4897-94c8-13d90dce5824 3e5569ccf68da2f4e572c7445291c7a3 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.WXS.N C3L-00143 UCEC WXS blood_normal CPT0003970002 CPT0003970002.WholeExome.RP-1303.bam 33346308113 BAM submitted_aligned CPTAC3 22657d1a-e86c-42ab-8d78-96ec68d47f81 a37880d19d7abc6a4da4c5303c532e0f {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00143.WXS.N.hg38 C3L-00143 UCEC WXS blood_normal CPT0003970002 c043b586-b3c2-4a81-a4f3-ccc22a2ec00d_gdc_realn.bam 44699785670 BAM harmonized CPTAC3 937a94b6-f52b-4bd0-a1e5-32b1d98e41ca f663e2897b22b251eaefc2aeeb4a3e95 {"aliquot_tag": "ALQ_520ea9a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00143.WXS.T C3L-00143 UCEC WXS tumor CPT0001910012 CPT0001910012.WholeExome.RP-1303.bam 28897594620 BAM submitted_aligned CPTAC3 2b9d0ef1-2613-4585-947b-bda648d9c758 aafc6b896e7a0a607a4c774931784bae {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00143.WXS.T.hg38 C3L-00143 UCEC WXS tumor CPT0001910012 791db96f-984d-4482-bd0c-5691bef0b600_gdc_realn.bam 39847331806 BAM harmonized CPTAC3 b44bbc36-16b3-431f-878e-c2f9110f580e 4e259305ca44fa2744ff67393ecabcb2 {"aliquot_tag": "ALQ_53ca7c6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.MethArray.Green.A C3L-00144 LUAD Methylation_Array tissue_normal CPT0001970009 203027390089_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 26f46096-2284-42f2-8e0a-4c7fb5a6e81e 46f64620c59fa1ae36b6c5d81ea32dcc {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.MethArray.Green.T C3L-00144 LUAD Methylation_Array tumor CPT0001960012 201557560005_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 22a6e242-e828-4c79-9603-bf898b02eb7d 6b0e024d059f8ecd7a7a8d513f179843 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.MethArray.Red.A C3L-00144 LUAD Methylation_Array tissue_normal CPT0001970009 203027390089_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 fd45c0b6-83ea-4e99-82b9-3b638ce91b5c 1c56657d1468f4353348bdbb5a9712a6 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.MethArray.Red.T C3L-00144 LUAD Methylation_Array tumor CPT0001960012 201557560005_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 3b7fa135-7355-4490-9308-c21559a3bcb1 4416b8e79bab876354e529cce63bbb7d {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.miRNA-Seq.A.hg38 C3L-00144 LUAD miRNA-Seq tissue_normal CPT0001970006 fe318230-76e7-45d2-ac6a-6ed497f9fe97_mirnaseq_gdc_realn.bam 226606364 BAM harmonized CPTAC3 7fce7759-7a59-4225-99bc-ff4c7fb9596c 30ca6c3d79fe9bc3bd98806ae9509be2 {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.miRNA-Seq.S29_L002_R1.T C3L-00144 LUAD miRNA-Seq tumor CPT0001960008 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L002_R1_001.unaln.bam 243494536 BAM S29_L002_R1 submitted_unaligned CPTAC3 1cfc0540-e547-4d25-b07d-efc52dc26886 5511d1a1ba79fe56a2447b5a6a8488dc {"aliquot_tag": "ALQ_18247823", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.miRNA-Seq.S29_L008_R1.A C3L-00144 LUAD miRNA-Seq tissue_normal CPT0001970006 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L008_R1_001.unaln.bam 207569976 BAM S29_L008_R1 submitted_unaligned CPTAC3 400425de-745d-426f-8ca0-b2d4addd8b00 aab52d3c3875cbb533ae2bf47088bf99 {"aliquot_tag": "ALQ_c2fc7c94", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.miRNA-Seq.T.hg38 C3L-00144 LUAD miRNA-Seq tumor CPT0001960008 7dd724fb-ad0a-4d76-adfc-ecccf45752bc_mirnaseq_gdc_realn.bam 264972717 BAM harmonized CPTAC3 139f48fc-cfb2-4876-adfc-264eea88e74a c0fe54405eba3dd655316380fee1b017 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.RNA-Seq.chimeric.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.chimeric.gdc_realn.bam 100871369 BAM chimeric harmonized CPTAC3 3ded4e49-7c01-40d5-b443-9a3b3cab9663 863bc8c7c1d3670bddda8d3ad0f4478f {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.RNA-Seq.chimeric.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.chimeric.gdc_realn.bam 114006005 BAM chimeric harmonized CPTAC3 da8024b3-3e22-4bf7-8ee4-193fb095020c ded7164ce2269bc1309da46027c44f69 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.RNA-Seq.genomic.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.genomic.gdc_realn.bam 6655943379 BAM genomic harmonized CPTAC3 671e72d6-fa5e-4dc0-a8ee-7119a73d13c4 1af60ea42c7122c84d115094c484514a {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.RNA-Seq.genomic.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.genomic.gdc_realn.bam 8564131775 BAM genomic harmonized CPTAC3 3feaeb70-1588-48cc-b0fe-e7ae3c4bb37b ba7afdac0b78eeffb2d7a34421a31556 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.RNA-Seq.S2_L002_R1.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R1_001.fastq.gz 2962348349 FASTQ S2_L002_R1 submitted_unaligned CPTAC3 28a0f947-13c5-4516-bf1f-5f19964a78fa 34dcc56269a61dc0274d1dee29d2c0cb {"aliquot_tag": "ALQ_c2fc7c94", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.RNA-Seq.S2_L002_R2.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R2_001.fastq.gz 3226200962 FASTQ S2_L002_R2 submitted_unaligned CPTAC3 61ddf30e-431b-4e87-b774-8ae1070bc7fe 00a9e8853ddc534b37bae5067162e6d3 {"aliquot_tag": "ALQ_c2fc7c94", "sample": "S2", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.RNA-Seq.S9_L003_R1.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R1_001.fastq.gz 3544821982 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 e54b8655-54e3-4933-9ad2-5a09910426fd 2313681b18e646152debb07a68c4f100 {"aliquot_tag": "ALQ_18247823", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.RNA-Seq.S9_L003_R2.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R2_001.fastq.gz 3887899247 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 6357ac54-9bdc-4da6-960b-0acd8769b0ee d5424c031c15b5dedd67f4626e7b5393 {"aliquot_tag": "ALQ_18247823", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.RNA-Seq.transcriptome.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.transcriptome.gdc_realn.bam 7179348975 BAM transcriptome harmonized CPTAC3 a2f79991-45cc-4e93-b89f-03dfd1900ffb 0d2722c44a3352ba7caa14735b7d77fe {"aliquot_tag": "ALQ_c2fc7c94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.RNA-Seq.transcriptome.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.transcriptome.gdc_realn.bam 8594160186 BAM transcriptome harmonized CPTAC3 d09135b5-ac0a-4868-8bc7-cb56166044ca 1e2e1fdc1e51a8a44d3986a5d6883ff1 {"aliquot_tag": "ALQ_18247823", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.Targeted.T C3L-00144 LUAD Targeted_Sequencing tumor CPT0001960012 CPT0001960012.CustomSelection.RP-1303.PDO-18786.bam 4481877861 BAM submitted_aligned CPTAC3 21651781-960c-4a4a-9351-4242240d62f0 2c090902ae0dac5aa3c38b217296d010 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.Targeted.T.hg38 C3L-00144 LUAD Targeted_Sequencing tumor CPT0001960012 1e8747dc-15dd-4c9c-a3aa-710a61988f6a_targetedsequencing_gdc_realn.bam 6179574350 BAM harmonized CPTAC3 3afe6ca8-7627-409a-b243-a9f811e32c0a 42fcfbabc34a5d0f302581f53fab7a21 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.WGS.A C3L-00144 LUAD WGS tissue_normal CPT0001970009 CPT0001970009.WholeGenome.RP-1303.bam 61851541075 BAM submitted_aligned CPTAC3 252eb565-4897-417f-9ea1-0311b8290027 03eb9e1defdcdc37874037ffecb8593d {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.WGS.A.hg38 C3L-00144 LUAD WGS tissue_normal CPT0001970009 050920fd-6b40-490c-ac47-3f716cf5bac8_wgs_gdc_realn.bam 90854671627 BAM harmonized CPTAC3 50db1919-888d-40ef-84c5-d420dc6334bc 8fbb8f9b50007f17aa72cfb9dd869990 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.WGS.N C3L-00144 LUAD WGS blood_normal CPT0003980002 CPT0003980002.WholeGenome.RP-1303.bam 132323895611 BAM submitted_aligned CPTAC3 537a5e45-1aaa-4581-9bca-e5074255c2e0 4b5d7073de40378f0e2079a603aab402 {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00144.WGS.N.hg38 C3L-00144 LUAD WGS blood_normal CPT0003980002 9560d92b-1aef-49fb-8013-5db2e948ad93_gdc_realn.bam 192669392884 BAM harmonized CPTAC3 14d3d74b-7e7e-48d6-bad7-a45fa32e8212 973ab8a371766a83e3a75b1dc5e8a78b {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00144.WGS.T C3L-00144 LUAD WGS tumor CPT0001960012 CPT0001960012.WholeGenome.RP-1303.bam 152774681259 BAM submitted_aligned CPTAC3 d3b6baee-a63b-4799-a0ca-8e4243d55d6e f24bd547b6a371c708baa93857194f6b {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.WGS.T.hg38 C3L-00144 LUAD WGS tumor CPT0001960012 1e8747dc-15dd-4c9c-a3aa-710a61988f6a_gdc_realn.bam 221972457006 BAM harmonized CPTAC3 9c1df8d2-59e3-473d-8954-3e9108ee4505 46f5ae30c38e0a7553814f30de81f091 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.WXS.A C3L-00144 LUAD WXS tissue_normal CPT0001970009 CPT0001970009.WholeExome.RP-1303.bam 38329979252 BAM submitted_aligned CPTAC3 d26533e3-04c0-438e-bcb6-a6aac0a234f9 73507b1112792fa11e61dfe156fe9293 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.WXS.A.hg38 C3L-00144 LUAD WXS tissue_normal CPT0001970009 050920fd-6b40-490c-ac47-3f716cf5bac8_wxs_gdc_realn.bam 52209162917 BAM harmonized CPTAC3 82953c89-ef19-4068-9569-4a08170279ae 486c08dd0a102de2a5df81d898dde3d0 {"aliquot_tag": "ALQ_52436105", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00144.WXS.N C3L-00144 LUAD WXS blood_normal CPT0003980002 CPT0003980002.WholeExome.RP-1303.bam 29973029078 BAM submitted_aligned CPTAC3 57fd3913-181a-4674-8c85-713a8adbe531 a62e7ddd67dac49935837d8c46fcb790 {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00144.WXS.N.hg38 C3L-00144 LUAD WXS blood_normal CPT0003980002 9560d92b-1aef-49fb-8013-5db2e948ad93_gdc_realn.bam 40576237253 BAM harmonized CPTAC3 29122fed-92c5-4c19-9a04-15760d169b42 a5703e4bf4a3addaaa41975d6ee68b48 {"aliquot_tag": "ALQ_d05e3e75", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00144.WXS.T C3L-00144 LUAD WXS tumor CPT0001960012 CPT0001960012.WholeExome.RP-1303.bam 35915018972 BAM submitted_aligned CPTAC3 29ec5115-405d-49cb-91f2-d0bdca6d4973 e912c831527ec3c429d62403af7874ed {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00144.WXS.T.hg38 C3L-00144 LUAD WXS tumor CPT0001960012 1e8747dc-15dd-4c9c-a3aa-710a61988f6a_gdc_realn.bam 50288879480 BAM harmonized CPTAC3 367e1821-44cf-467e-a85a-acf580a60959 c714bf6733f9e8a3dfa7cd4649657453 {"aliquot_tag": "ALQ_e1eaa07c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.MethArray.Green.T C3L-00145 UCEC Methylation_Array tumor CPT0002630009 202184990052_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cc18dc51-39d8-4a1e-9d9d-c0a03f6ff0a3 623cc82cf9340833d0596bd15780756e {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.MethArray.Red.T C3L-00145 UCEC Methylation_Array tumor CPT0002630009 202184990052_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 f5b16185-ca2b-4442-b4e6-29309b41028f 413d73798544ad095035de8eb6caf9ea {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.miRNA-Seq.S11_L005_R1.T C3L-00145 UCEC miRNA-Seq tumor CPT0002630006 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L005_R1_001.unaln.bam 243627542 BAM S11_L005_R1 submitted_unaligned CPTAC3 35c93f3e-930a-4658-ba59-6e71efca8a88 579223c53b0772c4a6e46825806fa86b {"aliquot_tag": "ALQ_f7c2721c", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.miRNA-Seq.T.hg38 C3L-00145 UCEC miRNA-Seq tumor CPT0002630006 2aa1a7c3-626f-4c8a-9717-4c101ce92488_mirnaseq_gdc_realn.bam 267471215 BAM harmonized CPTAC3 55dd35be-653a-4264-9e05-8d76e5f48ac2 e84c96315ae154d2e10ec3b9c966d774 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.chimeric.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.chimeric.gdc_realn.bam 58395710 BAM chimeric harmonized CPTAC3 6b60c10d-bbc9-4c50-96f1-9e9254fed33e 5d4b4360c2a8d5508b6a09b6656c6f05 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.chimeric.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.chimeric.gdc_realn.bam 82564088 BAM chimeric harmonized CPTAC3 b4472987-ea37-47d6-af91-cfa94a88f9a2 61bfa50ea190b17a6fc0d9e5620666fd {"aliquot_tag": "ALQ_6d92da64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.genomic.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.genomic.gdc_realn.bam 7803407511 BAM genomic harmonized CPTAC3 a6470d86-374c-473d-89de-d6962e349a2f 8a793556abbef128133ba019e38185a5 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.genomic.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.genomic.gdc_realn.bam 3957129161 BAM genomic harmonized CPTAC3 3a1f66ea-6e19-4df6-b8f4-39c09b17fffa 720c71bbbd7fa6d13b47103bce893f11 {"aliquot_tag": "ALQ_6d92da64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.S19_L005_R1.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R1_001.fastq.gz 3740187142 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 1f5e3577-dbc5-46f7-8615-86887337a97e 484030a7cb73d048b6ecb091260c81d6 {"aliquot_tag": "ALQ_f7c2721c", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.S19_L005_R2.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R2_001.fastq.gz 3942541227 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 1c7f3fd1-e321-45b0-8e70-7ecad29c0558 8ecc8f9dbb15c787054ed43bbedccf3a {"aliquot_tag": "ALQ_f7c2721c", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.S88_R1.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R1_001.fastq.gz 1981326537 FASTQ S88_R1 submitted_unaligned CPTAC3 80557067-49bd-4bd8-a44a-e919497268c7 e978c7283516463c702547d497a5dd21 {"aliquot_tag": "ALQ_6d92da64", "sample": "S88", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.S88_R2.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R2_001.fastq.gz 2006846413 FASTQ S88_R2 submitted_unaligned CPTAC3 18fd6f3b-dab4-40ae-8d60-b7cd1f40630c 75595d5bd74e85a61e10df775a59a9cf {"aliquot_tag": "ALQ_6d92da64", "sample": "S88", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.transcriptome.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.transcriptome.gdc_realn.bam 9643676586 BAM transcriptome harmonized CPTAC3 89a55d41-0845-4ae3-af77-71332c8f0439 5ef30bac9c03eeb20f60984c24e49503 {"aliquot_tag": "ALQ_f7c2721c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.RNA-Seq.transcriptome.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.transcriptome.gdc_realn.bam 1690175994 BAM transcriptome harmonized CPTAC3 7f7f5aa7-6adb-4d26-a93f-63dc1fc32d7e 0ae39af3cea1b56379c0505d45a4526f {"aliquot_tag": "ALQ_6d92da64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.WGS.N C3L-00145 UCEC WGS blood_normal CPT0007990002 CPT0007990002.WholeGenome.RP-1303.bam 73827837704 BAM submitted_aligned CPTAC3 1515821d-e980-4795-a258-2e1e59a319d9 f25869629024f240ade1096f784d4d85 {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00145.WGS.N.hg38 C3L-00145 UCEC WGS blood_normal CPT0007990002 2a8535dc-eb5a-4517-a7be-6d52d87a4233_gdc_realn.bam 108256083425 BAM harmonized CPTAC3 f0c2d7a9-4236-4c49-84bc-2c02169339dd 457fc2f840d99e8b669ec4ceee002fb6 {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00145.WGS.T C3L-00145 UCEC WGS tumor CPT0002630009 CPT0002630009.WholeGenome.RP-1303.bam 66801846019 BAM submitted_aligned CPTAC3 aae699b2-cff6-4ec0-a1ea-6ce71f6938f0 aeef4b290a3103de1563386752e8d9b6 {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.WGS.T.hg38 C3L-00145 UCEC WGS tumor CPT0002630009 24d1cc36-8239-4162-a2c2-6448607a4620_gdc_realn.bam 97481677484 BAM harmonized CPTAC3 fe66b253-513c-4b4d-a0fc-abd808170301 d55b5245da83c68a082d930ebedb361e {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.WXS.N C3L-00145 UCEC WXS blood_normal CPT0007990002 CPT0007990002.WholeExome.RP-1303.bam 24870597436 BAM submitted_aligned CPTAC3 723c54f1-5177-40a6-bc94-db897dcafbb9 ceb4322c0d618d83af3d5e494112a7da {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00145.WXS.N.hg38 C3L-00145 UCEC WXS blood_normal CPT0007990002 2a8535dc-eb5a-4517-a7be-6d52d87a4233_gdc_realn.bam 33928443362 BAM harmonized CPTAC3 a4663b3f-7399-4fb6-b11b-536983006cac 1d0dd754436d6ca7cf27b93576e76af1 {"aliquot_tag": "ALQ_197133d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00145.WXS.T C3L-00145 UCEC WXS tumor CPT0002630009 CPT0002630009.WholeExome.RP-1303.bam 25562273149 BAM submitted_aligned CPTAC3 e636078c-c9d4-4b0f-8a07-7bd845ea72e3 5d96ed00b275881a5069346bda26c618 {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00145.WXS.T.hg38 C3L-00145 UCEC WXS tumor CPT0002630009 24d1cc36-8239-4162-a2c2-6448607a4620_gdc_realn.bam 34448653810 BAM harmonized CPTAC3 aabae279-c40a-4c09-92bc-e2f9d662eed7 7e832cb3b960c4cfc097244f4aa28d8c {"aliquot_tag": "ALQ_677d6f8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.MethArray.Green.T C3L-00156 UCEC Methylation_Array tumor CPT0002080008 202163550076_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a75695f1-5e23-49e1-81a3-dc2db4b751b9 c6e6f5eda64a6baddb62b9a6df775a77 {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.MethArray.Red.T C3L-00156 UCEC Methylation_Array tumor CPT0002080008 202163550076_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 57cdcabf-99c0-4d03-9e2d-a4f68d5eb1d9 f9681f2a776db509f0e525c9538f4b13 {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.miRNA-Seq.S36_L002_R1.T C3L-00156 UCEC miRNA-Seq tumor CPT0002080005 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L002_R1_001.unaln.bam 211426620 BAM S36_L002_R1 submitted_unaligned CPTAC3 b4fdcc29-5a4e-4c6b-b551-c367014c0e18 4cbbff5e427d5620b9d43201505dfd89 {"aliquot_tag": "ALQ_cf42f1aa", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.miRNA-Seq.T.hg38 C3L-00156 UCEC miRNA-Seq tumor CPT0002080005 2c10a2cf-1c4e-4111-a771-a7bbbead738a_mirnaseq_gdc_realn.bam 230696492 BAM harmonized CPTAC3 b4cfa8a8-b8d2-4869-bd7d-8781e67f3ce0 d29fa73fd73f8f66a60af7e8e47e9fd7 {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.chimeric.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.chimeric.gdc_realn.bam 112082522 BAM chimeric harmonized CPTAC3 69f98007-da86-4db7-bf22-7aefe7b7181c 797b5a2f6f2ea4784d181b89fdeffc78 {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.chimeric.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.chimeric.gdc_realn.bam 110716280 BAM chimeric harmonized CPTAC3 db78ec5c-802d-49f1-b998-d01777f5f648 75c9a87b4556c9471145188d7c91597e {"aliquot_tag": "ALQ_e2d22fc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.genomic.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.genomic.gdc_realn.bam 10561241753 BAM genomic harmonized CPTAC3 7306c0f3-d6e9-4173-8442-e6813a64ec38 c1396dd8504b7d7c7cb3f2350197bac4 {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.genomic.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.genomic.gdc_realn.bam 6292376760 BAM genomic harmonized CPTAC3 c0948887-e85e-431a-81a3-e3e92132f4c9 3fc3425935f673e9c31ae5f2ac13bb0e {"aliquot_tag": "ALQ_e2d22fc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.S16_L004_R1.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R1_001.fastq.gz 4437257327 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 e1abab26-3582-4e7c-bbea-7cadbd0e36e5 48caf33885a7d3a87b5acc4083377d02 {"aliquot_tag": "ALQ_cf42f1aa", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.S16_L004_R2.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R2_001.fastq.gz 4884637755 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 b92610bf-9bcd-4f26-948d-448f963586de b483162d57628860eed6a9f135a94c01 {"aliquot_tag": "ALQ_cf42f1aa", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.S41_R1.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R1_001.fastq.gz 3527121504 FASTQ S41_R1 submitted_unaligned CPTAC3 4329d865-b7eb-4a69-81c6-ad985d3d8903 9f2f9f3386d71dc6b034f56bbe3fa235 {"aliquot_tag": "ALQ_e2d22fc4", "sample": "S41", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.S41_R2.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R2_001.fastq.gz 3566698561 FASTQ S41_R2 submitted_unaligned CPTAC3 bab3f4fd-3c7b-4243-bb17-d654045d57e8 39c4e15b74a2257424b7530bb0a158b4 {"aliquot_tag": "ALQ_e2d22fc4", "sample": "S41", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.transcriptome.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.transcriptome.gdc_realn.bam 10205256389 BAM transcriptome harmonized CPTAC3 00276494-28e3-4f1e-85e0-0e855aba0c68 6e9636d90137e19a2377084d527d55ef {"aliquot_tag": "ALQ_cf42f1aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.RNA-Seq.transcriptome.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.transcriptome.gdc_realn.bam 3028439459 BAM transcriptome harmonized CPTAC3 697d309e-54f6-42b8-a399-4a4f6e828068 eabb5e6153cf2209285c60d9dbe51758 {"aliquot_tag": "ALQ_e2d22fc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.WGS.N C3L-00156 UCEC WGS blood_normal CPT0004340002 CPT0004340002.WholeGenome.RP-1303.bam 64458479411 BAM submitted_aligned CPTAC3 e9941a9d-81c4-4a22-a8aa-b7a1adb43156 35594b8cdb9e5ec5d6a99cd5dad28f5b {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00156.WGS.N.hg38 C3L-00156 UCEC WGS blood_normal CPT0004340002 ee8e3dc1-6ec7-44fe-9e3e-a7455e9920ac_gdc_realn.bam 92962148927 BAM harmonized CPTAC3 75786b70-9e4a-42a8-892a-29812f7b0e20 601a4c556a29bfb9cfecd253f92d9d69 {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00156.WGS.T C3L-00156 UCEC WGS tumor CPT0002080008 CPT0002080008.WholeGenome.RP-1303.bam 62963631276 BAM submitted_aligned CPTAC3 537b957d-4f95-4ad5-b28e-744db945d383 2d882bf397c3b1790da6b6a534a9051f {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.WGS.T.hg38 C3L-00156 UCEC WGS tumor CPT0002080008 ed2b6a93-896d-4fc9-8e2b-00821b00fe58_gdc_realn.bam 92343052110 BAM harmonized CPTAC3 b2cf2d6b-1638-4d6b-8df3-8ebe30121041 82d90743fb0c903cd4bededf518d5f2d {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.WXS.N C3L-00156 UCEC WXS blood_normal CPT0004340002 CPT0004340002.WholeExome.RP-1303.bam 26158790565 BAM submitted_aligned CPTAC3 8df40c1d-ff3b-4889-aace-1174a97a7991 4a36c714194a52c19659daead89539e7 {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00156.WXS.N.hg38 C3L-00156 UCEC WXS blood_normal CPT0004340002 ee8e3dc1-6ec7-44fe-9e3e-a7455e9920ac_gdc_realn.bam 35735142458 BAM harmonized CPTAC3 a402cc2d-41ac-4d0a-ac99-3a014754fd49 e689934bba57a4c2e9f15a622cc53c9e {"aliquot_tag": "ALQ_7192ce9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00156.WXS.T C3L-00156 UCEC WXS tumor CPT0002080008 CPT0002080008.WholeExome.RP-1303.bam 19688315646 BAM submitted_aligned CPTAC3 48422f89-52d1-4a5c-b54d-80e512c1ab00 841d6b59490aacc0e938c7b0a90b9a6b {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00156.WXS.T.hg38 C3L-00156 UCEC WXS tumor CPT0002080008 ed2b6a93-896d-4fc9-8e2b-00821b00fe58_gdc_realn.bam 26988961538 BAM harmonized CPTAC3 799c73ad-e7de-45e6-9548-ac30072150e7 afc0484254a5e867617c3adb2277c870 {"aliquot_tag": "ALQ_b1f38d17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.MethArray.Green.T C3L-00157 UCEC Methylation_Array tumor CPT0002560009 202163550007_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1e076203-8ca0-4049-b9b3-3c2795db459e c70590139b78138c9ec22576ada19a54 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.MethArray.Red.T C3L-00157 UCEC Methylation_Array tumor CPT0002560009 202163550007_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 c2e90180-e083-407d-b2d7-29b90490d8ca c9dc7ef8394343b606fd1c88565c21f0 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.miRNA-Seq.S10_L005_R1.T C3L-00157 UCEC miRNA-Seq tumor CPT0002560006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L005_R1_001.unaln.bam 202820559 BAM S10_L005_R1 submitted_unaligned CPTAC3 f42b0e6b-1e37-4212-a152-2462ef8c955b 1e81da7ab4910d2a25db82a5674fb14d {"aliquot_tag": "ALQ_b9b68fc2", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.miRNA-Seq.T.hg38 C3L-00157 UCEC miRNA-Seq tumor CPT0002560006 9d3713aa-1a35-4fb2-a27d-3fb86e7d9bc2_mirnaseq_gdc_realn.bam 238921381 BAM harmonized CPTAC3 132d4d66-6d64-421f-9ab6-69cedeac8534 3b98268049877f142e4b77a95c4ec690 {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.RNA-Seq.chimeric.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.chimeric.gdc_realn.bam 47268822 BAM chimeric harmonized CPTAC3 1a5bccc4-cfca-4c36-9a39-2b916471e74b 3fa7e84703b1c1d9605564e76ae49eec {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.RNA-Seq.genomic.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.genomic.gdc_realn.bam 8627951661 BAM genomic harmonized CPTAC3 d80aa7d8-88e0-4ab7-b34c-e30326ccc253 5744079ff4be1f9110f13a45f51c7703 {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.RNA-Seq.S17_L005_R1.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R1_001.fastq.gz 3814953845 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 ea887db4-6dcb-4e75-b57f-5a0211fb4ba6 d7e9b2f56f5b5e69aa62f487307d7ce0 {"aliquot_tag": "ALQ_b9b68fc2", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.RNA-Seq.S17_L005_R2.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R2_001.fastq.gz 4116740879 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 9dd491c3-794c-4f2d-8010-512c90360b1b fc2f0a6bee442fd9b05968d573b1d857 {"aliquot_tag": "ALQ_b9b68fc2", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.RNA-Seq.transcriptome.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.transcriptome.gdc_realn.bam 12180357979 BAM transcriptome harmonized CPTAC3 79a571cb-a6a3-40e7-8281-d0961e68cfc1 ca52263291ba490e3cc2fef897f00a3c {"aliquot_tag": "ALQ_b9b68fc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.WGS.N C3L-00157 UCEC WGS blood_normal CPT0008040002 CPT0008040002.WholeGenome.RP-1303.bam 59993449555 BAM submitted_aligned CPTAC3 37c97c6f-16a9-49fd-b229-51906e952b33 16404cea8037b10973f3faa6c7c3e3ee {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00157.WGS.N.hg38 C3L-00157 UCEC WGS blood_normal CPT0008040002 8e4d5871-709e-49fa-aa5c-ab5e9060fca3_gdc_realn.bam 87407497914 BAM harmonized CPTAC3 4679e568-2b87-4f05-a67c-9d52f0143e05 fe81d6c5d2a21142600676627c4d0fdb {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00157.WGS.T C3L-00157 UCEC WGS tumor CPT0002560009 CPT0002560009.WholeGenome.RP-1303.bam 58835249688 BAM submitted_aligned CPTAC3 26a7ad97-9312-47fc-a98e-7fe77a556b6f fc1556303c6235e5bd2be0db16666566 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.WGS.T.hg38 C3L-00157 UCEC WGS tumor CPT0002560009 6fdfe226-a6b6-4836-a287-4b8b6e167e07_gdc_realn.bam 84892839149 BAM harmonized CPTAC3 a0a89248-1fe0-4b60-aaf3-49e1e971923d 9443749dda31ea5c61df77d943e7d3d1 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.WXS.N C3L-00157 UCEC WXS blood_normal CPT0008040002 CPT0008040002.WholeExome.RP-1303.bam 26510354868 BAM submitted_aligned CPTAC3 19057807-4b23-40a5-97bc-6dc121ea348f 8902fb759dd41a015b611c7cf03f92b5 {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00157.WXS.N.hg38 C3L-00157 UCEC WXS blood_normal CPT0008040002 8e4d5871-709e-49fa-aa5c-ab5e9060fca3_gdc_realn.bam 36889615521 BAM harmonized CPTAC3 6b7c566b-4693-4ea8-979c-26fb83949551 e2f4144ecd930d91c28a9756a2916794 {"aliquot_tag": "ALQ_30a6d646", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00157.WXS.T C3L-00157 UCEC WXS tumor CPT0002560009 CPT0002560009.WholeExome.RP-1303.bam 39500297975 BAM submitted_aligned CPTAC3 1f04632b-6bf3-477f-b006-7bbad3ca9995 8c1b36a0b78c3dd39a48cc17227f6901 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00157.WXS.T.hg38 C3L-00157 UCEC WXS tumor CPT0002560009 6fdfe226-a6b6-4836-a287-4b8b6e167e07_gdc_realn.bam 53922266720 BAM harmonized CPTAC3 fc36eee8-07a4-4ff9-9a4c-5dab053b833b 071ef060fcefb327618657e1def9d278 {"aliquot_tag": "ALQ_29099253", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.MethArray.Green.T C3L-00161 UCEC Methylation_Array tumor CPT0070380007 202178770006_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 c1fc3d56-9bb6-4c3c-962c-f0f316912ad8 3ee924ae8e001a446882a64baa74a8dd {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.MethArray.Red.T C3L-00161 UCEC Methylation_Array tumor CPT0070380007 202178770006_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 510d3c1f-5245-42b6-be03-db0788b7c61d 8675854043439c099663b5be44dfd9f0 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.miRNA-Seq.S48_L008_R1.T C3L-00161 UCEC miRNA-Seq tumor CPT0070380010 181012_UNC32-K00270_0124_AH223CBBXY_CAACTA_S48_L008_R1_001.unaln.bam 246787224 BAM S48_L008_R1 submitted_unaligned CPTAC3 9532979f-9a23-423a-b904-341f8bcb4d9d 11e9d4efddd42798a09776554b2c486a {"aliquot_tag": "ALQ_bdfd5efa", "sample": "S48", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.miRNA-Seq.T.hg38 C3L-00161 UCEC miRNA-Seq tumor CPT0070380010 bc9b2cdc-e66c-4b21-93a4-f83a2f61c5e2_mirnaseq_gdc_realn.bam 274065847 BAM harmonized CPTAC3 f584b14f-36cc-495c-895b-3d7b0c2ff1ee 9df5f3564aa5f5ba22ea7a8492376f86 {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.chimeric.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.chimeric.gdc_realn.bam 178156830 BAM chimeric harmonized CPTAC3 454cf1f1-2367-479e-9f36-0e7862ca9aad b5701cdbae5c2c32fb9208a9bbfdf2ba {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.chimeric.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.chimeric.gdc_realn.bam 111594232 BAM chimeric harmonized CPTAC3 0deea618-b027-4361-b094-3fb55211668a 0f86c811ab74f5f57a3d980f66676eda {"aliquot_tag": "ALQ_c99cd63f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.genomic.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.genomic.gdc_realn.bam 8293221158 BAM genomic harmonized CPTAC3 8c445589-5fd8-4445-a173-7554b817752e 1b6a6afc42c8350ba2f80b3ea899e230 {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.genomic.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.genomic.gdc_realn.bam 5294697129 BAM genomic harmonized CPTAC3 b9f11bf3-e1da-47c4-ad3a-58f9db4320ed be614c65715c42642816a0a5d1c5f1c0 {"aliquot_tag": "ALQ_c99cd63f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.S6_L008_R1.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4123381187 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 9e12b685-c46a-431b-bb9e-a90c6f7892ee 02437f3da56bd74fbe3cd4f416b6be0a {"aliquot_tag": "ALQ_bdfd5efa", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.S6_L008_R2.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4394831604 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 787253e0-0877-4bfa-98f5-9a258f8e1b57 b59dd2025a6ca6dfe94fe19fe9954808 {"aliquot_tag": "ALQ_bdfd5efa", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.S93_R1.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R1_001.fastq.gz 3660244988 FASTQ S93_R1 submitted_unaligned CPTAC3 a0ee2093-06c0-4ed6-a6f0-077b500b16e7 139a38001c31221ae95a235fcf4d0a4c {"aliquot_tag": "ALQ_c99cd63f", "sample": "S93", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.S93_R2.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R2_001.fastq.gz 3782759768 FASTQ S93_R2 submitted_unaligned CPTAC3 e9b68d40-d4ac-45b2-9c77-f5dd93260f41 96fc8c70018cfcdca028a20df00f4ead {"aliquot_tag": "ALQ_c99cd63f", "sample": "S93", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.transcriptome.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.transcriptome.gdc_realn.bam 11207030390 BAM transcriptome harmonized CPTAC3 e9753bfd-edd8-4b90-94c8-aa5b3c8e73c8 e5a56fe1c57163bae5f834696b638440 {"aliquot_tag": "ALQ_bdfd5efa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.RNA-Seq.transcriptome.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.transcriptome.gdc_realn.bam 4085358595 BAM transcriptome harmonized CPTAC3 308f2c10-e27d-4e24-96a9-e9665f1972e8 dccf6663327634eb067797fc665de665 {"aliquot_tag": "ALQ_c99cd63f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.WGS.N C3L-00161 UCEC WGS blood_normal CPT0070970002 CPT0070970002.WholeGenome.RP-1303.bam 56251859993 BAM submitted_aligned CPTAC3 ac0f1a57-086b-4668-8f3f-0f549d2f5e6b 73db9c5ef334869a8b556d609dbcbf83 {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00161.WGS.N.hg38 C3L-00161 UCEC WGS blood_normal CPT0070970002 86fb70f6-d13a-4fdf-80eb-a744902cbec2_gdc_realn.bam 84199931615 BAM harmonized CPTAC3 e8353960-b692-41e4-b7c3-007b1d54f4a2 769a1fecb953500eb6387685fb9f0cda {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00161.WGS.T C3L-00161 UCEC WGS tumor CPT0070380007 CPT0070380007.WholeGenome.RP-1303.bam 58857967742 BAM submitted_aligned CPTAC3 b52e923b-79c8-4d2f-9b82-a81758ddd036 098f34e8fbb6e71c5ed8746128b65478 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.WGS.T.hg38 C3L-00161 UCEC WGS tumor CPT0070380007 a9ccc7bf-8b4f-43bb-90ce-d943ea5bac6e_gdc_realn.bam 88806918668 BAM harmonized CPTAC3 58d48892-e06c-4389-8a66-efe483c39f35 4498a3320ca2003995c1b6c311c72359 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.WXS.N C3L-00161 UCEC WXS blood_normal CPT0070970002 CPT0070970002.WholeExome.RP-1303.bam 36566771134 BAM submitted_aligned CPTAC3 b771d847-25d3-4767-877c-c88eedf7a1ee a71df1901492e918ec8a80b4818e6864 {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00161.WXS.N.hg38 C3L-00161 UCEC WXS blood_normal CPT0070970002 86fb70f6-d13a-4fdf-80eb-a744902cbec2_gdc_realn.bam 49963852449 BAM harmonized CPTAC3 47d0c160-601e-445d-b19e-77a5d20d623f 07cba430cfa762365af0fa0cb6a88291 {"aliquot_tag": "ALQ_6923ba20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00161.WXS.T C3L-00161 UCEC WXS tumor CPT0070380007 CPT0070380007.WholeExome.RP-1303.bam 22219230983 BAM submitted_aligned CPTAC3 6d9960f6-caae-4a5d-a9c2-b6307c9c6dba 6270d97bd6b841cd32f1cb128b5c6624 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00161.WXS.T.hg38 C3L-00161 UCEC WXS tumor CPT0070380007 a9ccc7bf-8b4f-43bb-90ce-d943ea5bac6e_gdc_realn.bam 30611297837 BAM harmonized CPTAC3 b6c8e44f-c2d4-4353-b4a2-8859e573da0b 41c6c721ba2375ad9be5de4fc2c05980 {"aliquot_tag": "ALQ_3a82fa18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.MethArray.Green.A C3L-00165 CCRCC Methylation_Array tissue_normal CPT0186410006 204930630107_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 233ce963-5cca-420f-8f57-fcaa1cb46a87 6f365a4a1cfaa6029f8ba69d26884596 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.MethArray.Green.T C3L-00165 CCRCC Methylation_Array tumor CPT0186400006 203219750071_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b82ccdd3-43e6-426f-939f-0e576aae8c81 bbd636145b5c09af6ec2a8a5c6c19355 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.MethArray.Red.A C3L-00165 CCRCC Methylation_Array tissue_normal CPT0186410006 204930630107_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 5837090d-1935-4151-9850-4b1a7c83f7b9 b056c6de26061c0f26e12ec77980912f {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.MethArray.Red.T C3L-00165 CCRCC Methylation_Array tumor CPT0186400006 203219750071_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 f7ee8b65-0b1c-4886-8a03-ebb691f09f2e 2e20fe67418aeaf4c17e7cf6652fa590 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.miRNA-Seq.A.hg38 C3L-00165 CCRCC miRNA-Seq tissue_normal CPT0186410009 6a4f21ea-1d2f-47f3-8e0a-bad1b0cc214d_mirnaseq_gdc_realn.bam 231389323 BAM harmonized CPTAC3 ab9343c6-4a1c-4b25-874c-b93cbf5345bd 2530a597eeffc6b3b75e52299399f622 {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.miRNA-Seq.S10_L001_R1.A C3L-00165 CCRCC miRNA-Seq tissue_normal CPT0186410009 190206_UNC31-K00269_0191_AH2WY5BBXY_GACGAC_S10_L001_R1_001.unaln.bam 205116660 BAM S10_L001_R1 submitted_unaligned CPTAC3 d96e398c-9c2c-4e78-aad3-b4420be1f8f3 2a5a41aa80be63223bbe55967e68c45f {"aliquot_tag": "ALQ_60a4b603", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.miRNA-Seq.S38_L005_R1.T C3L-00165 CCRCC miRNA-Seq tumor CPT0186400009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L005_R1_001.unaln.bam 218806146 BAM S38_L005_R1 submitted_unaligned CPTAC3 fe303846-577a-4997-8d8d-ba40ba3ec256 d5ed397d23d2c838a6af94de55c7c847 {"aliquot_tag": "ALQ_5dc49fb3", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.miRNA-Seq.T.hg38 C3L-00165 CCRCC miRNA-Seq tumor CPT0186400009 cfc7eb08-5492-4b10-9145-d08790666fa7_mirnaseq_gdc_realn.bam 240007072 BAM harmonized CPTAC3 5d09a045-e956-46bb-bf9f-f6e9ea439f97 c72ec3b28eca2a2660752aeed00d3557 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.RNA-Seq.chimeric.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.chimeric.gdc_realn.bam 157463378 BAM chimeric harmonized CPTAC3 2cc5bd56-bfec-425c-a471-5d6bb129774e 45401e1ec45208818e29fd658f0aa575 {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.RNA-Seq.chimeric.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.chimeric.gdc_realn.bam 31536693 BAM chimeric harmonized CPTAC3 dacfe6af-56da-457b-9c5d-691c0ae66d99 6b25b7c4ef8827e2a8c3e52c3ea481b3 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.RNA-Seq.genomic.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.genomic.gdc_realn.bam 9574666143 BAM genomic harmonized CPTAC3 4a841075-15aa-43de-898b-8916af9ae108 f8799d18b4da9dc48a9a2a3ff56ef7fb {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.RNA-Seq.genomic.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.genomic.gdc_realn.bam 7414171794 BAM genomic harmonized CPTAC3 06192d88-a249-4cd5-9db5-76fa9ab44985 0d5f22fdf53a97af10fb81005354adf0 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.RNA-Seq.S1_L001_R1.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R1_001.fastq.gz 4271712663 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 1ca1d1d3-5991-4813-a874-ad3c597e8cb1 a935c54fd36ee7a5e4d518849da0ff98 {"aliquot_tag": "ALQ_60a4b603", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.RNA-Seq.S1_L001_R2.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R2_001.fastq.gz 4809428838 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 91571914-4ac2-43d9-a36d-da56a6f6302f 6b051ce295c2dde90a8a1c61a70b7ba0 {"aliquot_tag": "ALQ_60a4b603", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.RNA-Seq.S6_L008_R1.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R1_001.fastq.gz 3497861052 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 93af45b2-ef87-426d-90f3-0ba6a49db2cd 6412ad1ee7772ae607e24f7b3d91695c {"aliquot_tag": "ALQ_5dc49fb3", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.RNA-Seq.S6_L008_R2.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R2_001.fastq.gz 3737441772 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 5c3699a8-1547-4721-afd1-ce7b6b255bae a8a2631e2754fd61805d4ef268a9f1ef {"aliquot_tag": "ALQ_5dc49fb3", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.RNA-Seq.transcriptome.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.transcriptome.gdc_realn.bam 9931131741 BAM transcriptome harmonized CPTAC3 d1c44201-d707-4909-9d36-c1f6f7ee0148 38f96d2f99e9050a7487b4f36eb44224 {"aliquot_tag": "ALQ_60a4b603", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.RNA-Seq.transcriptome.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.transcriptome.gdc_realn.bam 9731555944 BAM transcriptome harmonized CPTAC3 7a7839ee-a10d-400b-a4ff-f6d675bfb181 f0ddb882ce2d2436116a4866b4471202 {"aliquot_tag": "ALQ_5dc49fb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.WGS.A C3L-00165 CCRCC WGS tissue_normal CPT0186410006 CPT0186410006.WholeGenome.RP-1303.bam 62757108017 BAM submitted_aligned CPTAC3 496a1cb5-14c0-483b-aa7f-a6efca09ac3a bd28e18de2f245a1110479d239edbfe1 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.WGS.A.hg38 C3L-00165 CCRCC WGS tissue_normal CPT0186410006 845de1bc-c19d-4e79-b659-8e94c54d890a_wgs_gdc_realn.bam 91595051026 BAM harmonized CPTAC3 deabddfe-8b5e-4228-be53-aeb271aad4f6 80d67c1bdef0e5ec76a833119f720ad2 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.WGS.N C3L-00165 CCRCC WGS blood_normal CPT0186540002 CPT0186540002.WholeGenome.RP-1303.bam 58444025148 BAM submitted_aligned CPTAC3 59a8677f-9a0a-45f1-9549-f65fe30ae060 657fee98f9946c677924070fefe6b741 {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00165.WGS.N.hg38 C3L-00165 CCRCC WGS blood_normal CPT0186540002 8b382730-80bf-4fd0-807b-06137f9e564d_wgs_gdc_realn.bam 86046739552 BAM harmonized CPTAC3 32b895ed-354d-4747-b4a0-ed92d73ab2b1 f8a58172954d0b9be12d2c84e7dd6d56 {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00165.WGS.T C3L-00165 CCRCC WGS tumor CPT0186400006 CPT0186400006.WholeGenome.RP-1303.bam 55110228436 BAM submitted_aligned CPTAC3 1132213f-8e46-4913-a46d-76ac000aed7a a8ff83ceda7ceb4ffb9bdb99511c7150 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.WGS.T.hg38 C3L-00165 CCRCC WGS tumor CPT0186400006 4bbcfd54-13ca-4f7b-a8f2-ff49b327a4cd_wgs_gdc_realn.bam 80412354616 BAM harmonized CPTAC3 e2bbeaa6-b347-4a7b-9947-9a87a6cda050 7809baa3e987ce5e259554197a5f0e9e {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.WXS.A C3L-00165 CCRCC WXS tissue_normal CPT0186410006 CPT0186410006.WholeExome.RP-1303.bam 28967966462 BAM submitted_aligned CPTAC3 c107df5d-6239-4595-b640-effe30bbb03a 11699804c0eef56b810c00fb14bd0553 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.WXS.A.hg38 C3L-00165 CCRCC WXS tissue_normal CPT0186410006 845de1bc-c19d-4e79-b659-8e94c54d890a_wxs_gdc_realn.bam 40249943363 BAM harmonized CPTAC3 bae91484-b8ee-4d49-81a1-0e8ff70155a4 d3a0993372bc501a01a17e7484f35f40 {"aliquot_tag": "ALQ_f01bab92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00165.WXS.N C3L-00165 CCRCC WXS blood_normal CPT0186540002 CPT0186540002.WholeExome.RP-1303.bam 26889634521 BAM submitted_aligned CPTAC3 d476d2a1-f97d-4cf2-9c21-daa49cc7744d 13c286b6b6bc10baeb68b14b1d75e533 {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00165.WXS.N.hg38 C3L-00165 CCRCC WXS blood_normal CPT0186540002 8b382730-80bf-4fd0-807b-06137f9e564d_wxs_gdc_realn.bam 37188205117 BAM harmonized CPTAC3 d940c53e-cebf-4ef6-84d2-75b562f72801 778e64d4c4c6c629a98de2766c3f5d2e {"aliquot_tag": "ALQ_f4ca335e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00165.WXS.T C3L-00165 CCRCC WXS tumor CPT0186400006 CPT0186400006.WholeExome.RP-1303.bam 25266615925 BAM submitted_aligned CPTAC3 db89efc7-0471-47be-bc68-286e7f38447c 37b52af434f1d193843573f295029c3a {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00165.WXS.T.hg38 C3L-00165 CCRCC WXS tumor CPT0186400006 4bbcfd54-13ca-4f7b-a8f2-ff49b327a4cd_wxs_gdc_realn.bam 35025434522 BAM harmonized CPTAC3 21303863-14ad-425a-9c44-a4520670c95e effd2cd11642420c6658239baaac7cc6 {"aliquot_tag": "ALQ_cd7b8222", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.MethArray.Green.T C3L-00183 CCRCC Methylation_Array tumor CPT0066470010 202184900140_R05C01_Grn.idat 13676261 IDAT Green NA CPTAC3 3c846f4c-e401-49bf-82c5-b5c59011e23f d3e17861dfd7b29921f982c6486d2f9b {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.MethArray.Red.T C3L-00183 CCRCC Methylation_Array tumor CPT0066470010 202184900140_R05C01_Red.idat 13676261 IDAT Red NA CPTAC3 d61f0e73-8c94-44c0-8945-f66ed59511e7 406153147cf6320087bd5361b6160d8d {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.miRNA-Seq.S32_L004_R1.T C3L-00183 CCRCC miRNA-Seq tumor CPT0066470007 181113_UNC31-K00269_0164_AH23NNBBXY_ACTTGA_S32_L004_R1_001.unaln.bam 310938237 BAM S32_L004_R1 submitted_unaligned CPTAC3 c03341ef-04e3-49c4-b043-68512e1d634d 7c9f6830374ecce72d9506d04005015e {"aliquot_tag": "ALQ_aad68d5", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.miRNA-Seq.T.hg38 C3L-00183 CCRCC miRNA-Seq tumor CPT0066470007 16fb7b4b-f3b6-4346-b6cd-d1699bcdfbee_mirnaseq_gdc_realn.bam 346567455 BAM harmonized CPTAC3 6d7e26fb-a0ef-4642-bee7-fdb666c3e459 6b779674376c106242e4e1a0e47a541b {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.RNA-Seq.chimeric.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.chimeric.gdc_realn.bam 27766425 BAM chimeric harmonized CPTAC3 26c0e9c9-d919-4dcd-8aed-6fead9be65a6 cc07c8e0a759827bf8b8c1ec93cffa6b {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.RNA-Seq.genomic.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.genomic.gdc_realn.bam 6978350735 BAM genomic harmonized CPTAC3 c729c68a-1ff5-45af-8f8a-5d48e944553e 2ef73e8222d8dd05bf3595b9764cef2d {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.RNA-Seq.S16_L004_R1.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R1_001.fastq.gz 3350745323 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 27bf8e37-426b-496f-8d9c-6ccc7c80b2f6 7ca067b09ef0dc310312523956720b0d {"aliquot_tag": "ALQ_aad68d5", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.RNA-Seq.S16_L004_R2.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R2_001.fastq.gz 3625849342 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 96db17cb-b531-47b3-98fc-a86921831781 f104151b9ec6f535fd1d8f2910359a20 {"aliquot_tag": "ALQ_aad68d5", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.RNA-Seq.transcriptome.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.transcriptome.gdc_realn.bam 8568426428 BAM transcriptome harmonized CPTAC3 833314d6-355a-4c72-8cde-4c16dcfac66d a07437671bfdf7fb9594c877cc512533 {"aliquot_tag": "ALQ_aad68d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.WGS.N C3L-00183 CCRCC WGS blood_normal CPT0070990002 CPT0070990002.WholeGenome.RP-1303.bam 67564483904 BAM submitted_aligned CPTAC3 b0c161c6-6fba-44be-bd64-1c31546075cb 4b10017086437fd5b4bfbd843224dd27 {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00183.WGS.N.hg38 C3L-00183 CCRCC WGS blood_normal CPT0070990002 dc74a374-6b12-4fd0-a4c4-4c261d93d256_gdc_realn.bam 100466078962 BAM harmonized CPTAC3 27c6f904-4480-4061-a7a0-fcbc39769da3 202891f935103696da57109962b1ce13 {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00183.WGS.T C3L-00183 CCRCC WGS tumor CPT0066470010 CPT0066470010.WholeGenome.RP-1303.bam 74232777433 BAM submitted_aligned CPTAC3 e1a95163-1d2b-4e4e-b4fe-68efba073ce8 7716909c0f9d11c5bf9d8227d72d02c8 {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.WGS.T.hg38 C3L-00183 CCRCC WGS tumor CPT0066470010 abe6c89c-34ab-4037-800a-e638f9dca8f5_gdc_realn.bam 109694799386 BAM harmonized CPTAC3 ad8048b7-703c-4e28-a054-f028abc49615 9d069b0b81fd9d848a6f2e06fb862bcf {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.WXS.N C3L-00183 CCRCC WXS blood_normal CPT0070990002 CPT0070990002.WholeExome.RP-1303.bam 29579806247 BAM submitted_aligned CPTAC3 f7978cff-b4a3-4c81-b74a-a2336b158d15 d2e7d5ba8f1fef83d21f0d2fb7085a32 {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00183.WXS.N.hg38 C3L-00183 CCRCC WXS blood_normal CPT0070990002 dc74a374-6b12-4fd0-a4c4-4c261d93d256_gdc_realn.bam 41364954086 BAM harmonized CPTAC3 b78ee226-375e-43cf-bd46-2a708bc2e7e8 e1dcc08d789d0d6343e305500042a5dd {"aliquot_tag": "ALQ_d6130441", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00183.WXS.T C3L-00183 CCRCC WXS tumor CPT0066470010 CPT0066470010.WholeExome.RP-1303.bam 30795576114 BAM submitted_aligned CPTAC3 33fe377c-a171-418b-9df0-12cca2f968b3 d61caf32e999cab66e55f135c0a8afbc {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00183.WXS.T.hg38 C3L-00183 CCRCC WXS tumor CPT0066470010 abe6c89c-34ab-4037-800a-e638f9dca8f5_gdc_realn.bam 42305483169 BAM harmonized CPTAC3 86049840-8897-4861-9659-15ccdef9f2b2 524c364176dcc9ceddd7265fd547b427 {"aliquot_tag": "ALQ_8dd2cc37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.MethArray.Green.T C3L-00189 PDA Methylation_Array tumor CPT0081060010 202184990063_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d7153ed5-88c9-4b49-be4b-8aa9f92781bc 715cc4d1bb2c1a260e94d891c441e3e3 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.MethArray.Red.T C3L-00189 PDA Methylation_Array tumor CPT0081060010 202184990063_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 60a29b8f-f794-4e40-9ca4-620fbbbb3fc5 9431ff8a6646414d691389bca266e294 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.miRNA-Seq.S17_L001_R1.T C3L-00189 PDA miRNA-Seq tumor CPT0081060007 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L001_R1_001.unaln.bam 264208048 BAM S17_L001_R1 submitted_unaligned CPTAC3 7e8d49fc-bf8d-457a-8510-f0dc6d9218a6 4253d56d758376a14d98deb8c216db18 {"aliquot_tag": "ALQ_7c712fcf", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.miRNA-Seq.T.hg38 C3L-00189 PDA miRNA-Seq tumor CPT0081060007 abf4b7e1-0639-49f1-afcb-a7bbaba06766_mirnaseq_gdc_realn.bam 290752183 BAM harmonized CPTAC3 96d11e31-189a-41cb-b974-fe1bb58e8abf 8be7815b33db224be98e67b14c1677e9 {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.RNA-Seq.chimeric.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.chimeric.gdc_realn.bam 88435931 BAM chimeric harmonized CPTAC3 33a1e39e-d01d-421d-bfa4-eb3e05a25375 0c10dec13f40c1fc87b77a8bbe673198 {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.RNA-Seq.genomic.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.genomic.gdc_realn.bam 8642159963 BAM genomic harmonized CPTAC3 75aad7c3-5b10-416a-874a-9d5ef40c8d96 d8bb0ed9589f3cef2a5168e91847e7ae {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.RNA-Seq.S11_L003_R1.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3733769690 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 beef0b1b-6b54-455b-914f-d774ee730e7b 60287ca7e875ea27b0336dd634563e8a {"aliquot_tag": "ALQ_7c712fcf", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.RNA-Seq.S11_L003_R2.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3871559073 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 5f5f8487-0642-4731-8db7-e1e194bdb9f5 d272028dbe7ba96625b19448a02c1e89 {"aliquot_tag": "ALQ_7c712fcf", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.RNA-Seq.transcriptome.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.transcriptome.gdc_realn.bam 9734664026 BAM transcriptome harmonized CPTAC3 aa5ebc03-8d2c-4c5a-81bd-d750d11bc477 3dd5e2eaeb280c6ba87db48a98d83d0e {"aliquot_tag": "ALQ_7c712fcf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.Targeted.T C3L-00189 PDA Targeted_Sequencing tumor CPT0081060010_1 CPT0081060010_1.CustomSelection.RP-1303.PDO-18786.bam 4649483802 BAM submitted_aligned CPTAC3 8c86649e-f00a-42c1-bc6a-9c9dd4052771 10a3267819ca05ad155ba7f1733493fc {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.Targeted.T.hg38 C3L-00189 PDA Targeted_Sequencing tumor CPT0081060010_1 9cb5b887-76b0-4202-8db8-b144665dc0e9_targetedsequencing_gdc_realn.bam 6707736616 BAM harmonized CPTAC3 cfece7cf-0ffd-4328-a9ba-30d718b088e2 3ee5d64106dbc536bc2640a2ea552aff {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.WGS.N C3L-00189 PDA WGS blood_normal CPT0081100002 CPT0081100002.WholeGenome.RP-1303.bam 64441785831 BAM submitted_aligned CPTAC3 8ab4f131-c646-41a9-a66b-5b525925854f d241407b40abfd6a87b684b72cf393e3 {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00189.WGS.N.hg38 C3L-00189 PDA WGS blood_normal CPT0081100002 7c72d1eb-35b2-4f3b-ac73-db99b0c1832c_gdc_realn.bam 96308933958 BAM harmonized CPTAC3 78aec529-8ed3-4b4f-9e78-37f02f82998f 5ebd0626ab7fd9e5b21672231dcdcbdd {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00189.WGS.T C3L-00189 PDA WGS tumor CPT0081060010 CPT0081060010.WholeGenome.RP-1303.bam 100619188858 BAM submitted_aligned CPTAC3 54f3a0fb-84b1-4813-869b-43f6688d0b5d a79243d21634d6e4505d3eba3d3257a0 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.WGS.T.hg38 C3L-00189 PDA WGS tumor CPT0081060010 89bd375b-f0de-4c53-bc3a-0857dd2a02ba_gdc_realn.bam 148094086812 BAM harmonized CPTAC3 c754b34f-3547-411c-8e38-fd847d23d130 e7cf6b49e9d398c1361d526721d78074 {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.WXS.N C3L-00189 PDA WXS blood_normal CPT0081100002 CPT0081100002.WholeExome.RP-1303.bam 33951565918 BAM submitted_aligned CPTAC3 572ea897-40f1-49f0-a013-667fb33d50ab f2784d24812ee40122e7b0a22af067eb {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00189.WXS.N.hg38 C3L-00189 PDA WXS blood_normal CPT0081100002 7c72d1eb-35b2-4f3b-ac73-db99b0c1832c_gdc_realn.bam 46704002870 BAM harmonized CPTAC3 82b6d795-c960-42e3-a2f6-fa488f4f4d3e d0f1813631b2d4e3ceb3e5baea419791 {"aliquot_tag": "ALQ_4807fd45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00189.WXS.T C3L-00189 PDA WXS tumor CPT0081060010_1 CPT0081060010_1.WholeExome.RP-1303.bam 55508875305 BAM submitted_aligned CPTAC3 f310171f-7ff0-414e-944d-0eee7e17476f 5996eae44e64bba5baa9de9a69a5c813 {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.WXS.T C3L-00189 PDA WXS tumor CPT0081060010 CPT0081060010.WholeExome.RP-1303.bam 28264677188 BAM submitted_aligned CPTAC3 f4db8d6f-620d-472d-8183-9a6f23b533cd 35ecc9b40c151933d12549bd4ae35f7b {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.WXS.T.hg38 C3L-00189 PDA WXS tumor CPT0081060010_1 9cb5b887-76b0-4202-8db8-b144665dc0e9_wxs_gdc_realn.bam 75973237529 BAM harmonized CPTAC3 c472c8ca-7039-47a3-9c0b-cdfd52e24658 b6d0eeac3b94d343f2d8debf828fd157 {"aliquot_tag": "ALQ_7764a817", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00189.WXS.T.hg38 C3L-00189 PDA WXS tumor CPT0081060010 89bd375b-f0de-4c53-bc3a-0857dd2a02ba_gdc_realn.bam 38881407155 BAM harmonized CPTAC3 64daa7de-55e4-4e5c-8844-6e834137bc83 92f3a4cae9c0942745db7cddda214a4c {"aliquot_tag": "ALQ_fb0e8b2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.MethArray.Green.A C3L-00263 LUAD Methylation_Array tissue_normal CPT0011750008 203027390091_R01C01_Grn.idat 13676230 IDAT Green NA CPTAC3 04c477b4-5881-46ea-8cf2-84f95174ae3e 43d0122a2f2f4b351e514f25d8b1bd16 {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.MethArray.Green.T C3L-00263 LUAD Methylation_Array tumor CPT0011710007 202163530120_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a30fa96e-8720-4738-87e7-34afc186242f dece399d00c03730b63a4bde01ad6647 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.MethArray.Red.A C3L-00263 LUAD Methylation_Array tissue_normal CPT0011750008 203027390091_R01C01_Red.idat 13676230 IDAT Red NA CPTAC3 4e57b96b-e36b-40b0-89cd-84da3ef3e546 8ac3a3a929546d1993cffb4f89d57bdd {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.MethArray.Red.T C3L-00263 LUAD Methylation_Array tumor CPT0011710007 202163530120_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 e2ca967f-19e0-4b35-a3c4-592af20e0031 bbd22be4e2b9d39c71ab25cee0ef4fa1 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.miRNA-Seq.A.hg38 C3L-00263 LUAD miRNA-Seq tissue_normal CPT0011750005 6b23c9a8-f480-45b6-a054-840514ab97d7_mirnaseq_gdc_realn.bam 245841621 BAM harmonized CPTAC3 515106a0-7ad1-45e7-9a64-ccbc35367c14 52824ac468040924378ff79ed4c4701c {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.miRNA-Seq.S32_L004_R1.A C3L-00263 LUAD miRNA-Seq tissue_normal CPT0011750005 181108_UNC31-K00269_0162_AH255GBBXY_ACTTGA_S32_L004_R1_001.unaln.bam 217445694 BAM S32_L004_R1 submitted_unaligned CPTAC3 ae63a261-62c0-435b-8a08-f26d966174a9 62ae0ace598d4c8b4498b1f04c292049 {"aliquot_tag": "ALQ_d7951fa0", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.miRNA-Seq.S47_L004_R1.T C3L-00263 LUAD miRNA-Seq tumor CPT0011710010 181012_UNC32-K00270_0124_AH223CBBXY_GTGAAA_S47_L004_R1_001.unaln.bam 248165457 BAM S47_L004_R1 submitted_unaligned CPTAC3 6e9e76f6-3daf-4f5c-a0e8-feb8476c3024 1719ae94a26d3a7f683ea5b0a6aaafef {"aliquot_tag": "ALQ_4b647cae", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.miRNA-Seq.T.hg38 C3L-00263 LUAD miRNA-Seq tumor CPT0011710010 9016621d-4146-4c2a-8f95-916408a40415_mirnaseq_gdc_realn.bam 270374034 BAM harmonized CPTAC3 d7720850-e941-450c-a200-0edb35c86587 bcc994c563243d31c159279112ad9fd0 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.RNA-Seq.chimeric.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.chimeric.gdc_realn.bam 68561378 BAM chimeric harmonized CPTAC3 b05578d5-6fac-48d2-8a9b-fed9d64c7aea 0081659b064ec7c6485064bd83050c31 {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.RNA-Seq.chimeric.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.chimeric.gdc_realn.bam 100568975 BAM chimeric harmonized CPTAC3 5f7fbca8-a43f-47fa-9faf-da89e8f24e15 5ba6f2495754014bc740a0fc2bbb17b6 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.RNA-Seq.genomic.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.genomic.gdc_realn.bam 8110047094 BAM genomic harmonized CPTAC3 22e9cd27-64a8-4be8-b0ce-443f10110e14 bf34ef5b9b71e6a4bd79576c5c9bc146 {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.RNA-Seq.genomic.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.genomic.gdc_realn.bam 9633453397 BAM genomic harmonized CPTAC3 184bb0ec-a71a-426e-8fa4-86a3860fc7ff 5975e67f094a8263c2fde07ecffb3ab6 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.RNA-Seq.S1_L007_R1.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R1_001.fastq.gz 3923290884 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 15b13260-897a-49f8-bcd4-e36d00b01952 7fda6d83453116a1457fc6b53f38b5b3 {"aliquot_tag": "ALQ_d7951fa0", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.RNA-Seq.S1_L007_R2.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R2_001.fastq.gz 4323645507 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 5aba71bd-ce6b-45fc-a93f-9609d7dd8d36 727fb2e4f2872db09a224769db6c8ef4 {"aliquot_tag": "ALQ_d7951fa0", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.RNA-Seq.S2_L001_R1.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R1_001.fastq.gz 4314730041 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 cc6bf841-0601-4903-9874-3baf8b90095d 6ec53e8709f56b3ce1e655c8be9c57eb {"aliquot_tag": "ALQ_4b647cae", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.RNA-Seq.S2_L001_R2.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R2_001.fastq.gz 4671472175 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 57cef113-2cda-4f74-b94c-08e9a2c79a4d fa8fd1fe146225ee1673bf8436233b7c {"aliquot_tag": "ALQ_4b647cae", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.RNA-Seq.transcriptome.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.transcriptome.gdc_realn.bam 11070459868 BAM transcriptome harmonized CPTAC3 ce03d437-ab00-4ef4-8057-38ad9488a6f9 bebaa710cbc98b1dc74f4323bda3bcba {"aliquot_tag": "ALQ_d7951fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.RNA-Seq.transcriptome.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.transcriptome.gdc_realn.bam 11568792638 BAM transcriptome harmonized CPTAC3 593c1d8c-8838-4292-93d2-4b4501bd79a3 ae702d4f1e9c0f22c39fc2e81b197159 {"aliquot_tag": "ALQ_4b647cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.WGS.N C3L-00263 LUAD WGS blood_normal CPT0012420002 CPT0012420002.WholeGenome.RP-1303.bam 57732601088 BAM submitted_aligned CPTAC3 9bea6d11-641b-4bc7-ac05-d6a3ab0f5258 f1ac4b7e0b364f5241038f8f7c7456a5 {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00263.WGS.N.hg38 C3L-00263 LUAD WGS blood_normal CPT0012420002 2a51eed2-4a78-45ad-8209-d87968005886_gdc_realn.bam 83185306069 BAM harmonized CPTAC3 6590064c-552c-46e9-b432-1689f86250c1 e69ca90c6720ee2af0e5b43b915f85c9 {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00263.WGS.T C3L-00263 LUAD WGS tumor CPT0011710007 CPT0011710007.WholeGenome.RP-1303.bam 64669275017 BAM submitted_aligned CPTAC3 9a1dec1c-64d4-4232-baae-67dc00d18415 5785ad93153010168864b31e972c1984 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.WGS.T.hg38 C3L-00263 LUAD WGS tumor CPT0011710007 f0c8f826-d8fd-4c98-9717-6cca974055dc_gdc_realn.bam 93780859548 BAM harmonized CPTAC3 4312fc01-aaf2-4c9e-998a-4aaf2bbf37ff 2ad260abd8bb662015e0de1a4303ea11 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.WXS.A C3L-00263 LUAD WXS tissue_normal CPT0011750008 CPT0011750008.WholeExome.RP-1303.bam 30220145931 BAM submitted_aligned CPTAC3 9e6f0269-2a60-4da9-adb9-0a932d3b88fc e8d9e119e9be7a339fab45d7e3e37d7e {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.WXS.A.hg38 C3L-00263 LUAD WXS tissue_normal CPT0011750008 a8887a87-88db-47e9-9f1a-c49f75ac8d6a_wxs_gdc_realn.bam 41569850743 BAM harmonized CPTAC3 673f8519-8dac-477f-917b-6f80a0f2c271 88d4cab34854e682f48a153aaf984972 {"aliquot_tag": "ALQ_a924631d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00263.WXS.N C3L-00263 LUAD WXS blood_normal CPT0012420002 CPT0012420002.WholeExome.RP-1303.bam 23762456667 BAM submitted_aligned CPTAC3 d2908439-b028-413a-9bcd-47b54a35c234 df0545c18a9928ed2290038b2ffbffbb {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00263.WXS.N.hg38 C3L-00263 LUAD WXS blood_normal CPT0012420002 2a51eed2-4a78-45ad-8209-d87968005886_gdc_realn.bam 32550839521 BAM harmonized CPTAC3 e00e1c39-2d9a-4cc3-98b4-1865ccf237ea cd3dd2464188b4ec0f5f39df6fe9c648 {"aliquot_tag": "ALQ_4cad3e20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00263.WXS.T C3L-00263 LUAD WXS tumor CPT0011710007 CPT0011710007.WholeExome.RP-1303.bam 25435515814 BAM submitted_aligned CPTAC3 c2150250-a1f4-47f9-83d4-6ac798b2248f ffc433c45ff837fc5b15e4eae67b04f1 {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00263.WXS.T.hg38 C3L-00263 LUAD WXS tumor CPT0011710007 f0c8f826-d8fd-4c98-9717-6cca974055dc_gdc_realn.bam 34897668803 BAM harmonized CPTAC3 f5f667d2-69bd-4d09-a03a-3cc9932bfcea 4b6d9dfe1ab977291dec24dad699160b {"aliquot_tag": "ALQ_cc1bd84c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.MethArray.Green.A C3L-00277 PDA Methylation_Array tissue_normal CPT0011540010 203561450100_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0b313bca-83ab-4697-b531-bec5ed9e7876 0a62cacfbf7a9eaffd6429d64f1be611 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00277.MethArray.Green.T C3L-00277 PDA Methylation_Array tumor CPT0011520006 202178770111_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 722a2690-7457-4024-841b-cd867b8d6c3f 61670a4a342e459cdc68fcbcd9c026fd {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.MethArray.Red.A C3L-00277 PDA Methylation_Array tissue_normal CPT0011540010 203561450100_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 3b5a1b08-ba1c-4c70-8f30-955798650cf5 819962c831fa7a43fe3e23c9e3089448 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00277.MethArray.Red.T C3L-00277 PDA Methylation_Array tumor CPT0011520006 202178770111_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 fb93588e-6fde-4ea9-a728-30f3b72d0673 36f66b22f7d17b766345694c42d73985 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.miRNA-Seq.S14_L001_R1.T C3L-00277 PDA miRNA-Seq tumor CPT0011520009 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 235999101 BAM S14_L001_R1 submitted_unaligned CPTAC3 316afba4-7e72-4cc3-bd61-a97f446cf36f 5ddb9ce7afb6201d719d0acec39425d4 {"aliquot_tag": "ALQ_21cb2e90", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.miRNA-Seq.T.hg38 C3L-00277 PDA miRNA-Seq tumor CPT0011520009 fcaf45f4-732b-403f-8aec-6bc44e26e703_mirnaseq_gdc_realn.bam 265445646 BAM harmonized CPTAC3 71b322f7-3927-4b7c-9562-c716c03dbb01 085f0243f294831a430a0dd4a7573ce8 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.RNA-Seq.chimeric.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.chimeric.gdc_realn.bam 93911055 BAM chimeric harmonized CPTAC3 fec42229-3b29-4790-81d7-70bef0c4e8a4 27d386a3be683fe7bf0e88a3b583e638 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.genomic.gdc_realn.bam 8057632753 BAM genomic harmonized CPTAC3 ed801705-746b-40d4-bb6d-44493abae816 8784ac32632b7c7affa3eaad56d48637 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.RNA-Seq.S4_L001_R1.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4216556912 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 a08adf4b-e3f8-4377-869e-aa7ce258cbdf 3d5fd4700bf1158d192bfb0832f9f352 {"aliquot_tag": "ALQ_21cb2e90", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.RNA-Seq.S4_L001_R2.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R2_001.fastq.gz 4554252121 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 12732716-1c43-41b3-9def-bffbe95e960b 99c464003b2810b5ee1da3ea33e7f40c {"aliquot_tag": "ALQ_21cb2e90", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.RNA-Seq.transcriptome.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.transcriptome.gdc_realn.bam 11688766873 BAM transcriptome harmonized CPTAC3 650938b7-16ef-4e23-8cd6-e416fe51d5de b9baea6918ed486476e1476560118817 {"aliquot_tag": "ALQ_21cb2e90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.Targeted.T C3L-00277 PDA Targeted_Sequencing tumor CPT0011520006_1 CPT0011520006_1.CustomSelection.RP-1303.PDO-18786.bam 3986545820 BAM submitted_aligned CPTAC3 90a6040d-6b8f-4e6e-9b92-cd0f1af9024b f7b72f2f15fa4dd808292ee191a02fb3 {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.Targeted.T.hg38 C3L-00277 PDA Targeted_Sequencing tumor CPT0011520006_1 58cdfc92-0d6b-46b3-94dd-28f1a5a247dd_targetedsequencing_gdc_realn.bam 5721713322 BAM harmonized CPTAC3 3d53590b-be46-4b35-906f-071f1156ce0a 4f495977eb19ea1d37a6c2a8d3bc551e {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.WGS.A C3L-00277 PDA WGS tissue_normal CPT0011540010 CPT0011540010.WholeGenome.RP-1303.bam 56527078367 BAM submitted_aligned CPTAC3 6366d373-ecbd-4ede-851f-898ef16e2dec ae7dbd017aad061ba693664764553c10 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00277.WGS.A.hg38 C3L-00277 PDA WGS tissue_normal CPT0011540010 c7dd538d-a66e-4698-8f58-d5c2f6863d0c_wgs_gdc_realn.bam 82522674490 BAM harmonized CPTAC3 bf7da377-8b18-4680-94f9-6eeea19620b7 106d139f2581096f2707bc2251890bfd {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00277.WGS.N C3L-00277 PDA WGS blood_normal CPT0012450002 CPT0012450002.WholeGenome.RP-1303.bam 63491090548 BAM submitted_aligned CPTAC3 196c3145-e1cf-401d-abb5-08bd97772545 067567c0684b8f0a39749fb9992bdd8d {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00277.WGS.N.hg38 C3L-00277 PDA WGS blood_normal CPT0012450002 596f83a1-5e9c-451b-9087-fbb18efe8447_gdc_realn.bam 95139814329 BAM harmonized CPTAC3 5a4be4e7-4ade-43d1-bf0d-05bf7f75f777 996d8cfc7d413793e7fc442a29e67801 {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00277.WGS.T C3L-00277 PDA WGS tumor CPT0011520006 CPT0011520006.WholeGenome.RP-1303.bam 81314543087 BAM submitted_aligned CPTAC3 e54a15bd-bfae-4908-88c4-a0d4440e3bc8 3d2440c4c14f04c2c872b0f430c59299 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.WGS.T.hg38 C3L-00277 PDA WGS tumor CPT0011520006 5d5bbdb1-74e4-4f1d-a025-df1959b77aa1_gdc_realn.bam 122527571156 BAM harmonized CPTAC3 fdc9052b-65b1-40bf-befd-3f8f2669f7b0 ded8082a70b002e2833239f97850d894 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.WXS.A C3L-00277 PDA WXS tissue_normal CPT0011540010 CPT0011540010.WholeExome.RP-1303.bam 28378209112 BAM submitted_aligned CPTAC3 7b344775-d99b-4b09-85ac-6e6e07afffcd 4368b04eab45b3cbb8cbf9078711e8b8 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00277.WXS.A.hg38 C3L-00277 PDA WXS tissue_normal CPT0011540010 c7dd538d-a66e-4698-8f58-d5c2f6863d0c_wxs_gdc_realn.bam 37935575374 BAM harmonized CPTAC3 d89c8782-bb0f-4521-95f6-3131321a9cbc 97e57b75aac6ac05cddea632d926b157 {"aliquot_tag": "ALQ_ce4c52d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00277.WXS.N C3L-00277 PDA WXS blood_normal CPT0012450002 CPT0012450002.WholeExome.RP-1303.bam 28800810674 BAM submitted_aligned CPTAC3 10206443-be9c-4768-853a-e83c11efd08d 951766d42ec63eef5138879c557aff09 {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00277.WXS.N.hg38 C3L-00277 PDA WXS blood_normal CPT0012450002 596f83a1-5e9c-451b-9087-fbb18efe8447_gdc_realn.bam 39387533918 BAM harmonized CPTAC3 19a7b0c7-b084-4936-8ffb-ebe9b8baf312 e032337143ef2f743f25936840aca425 {"aliquot_tag": "ALQ_fe8de230", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00277.WXS.T C3L-00277 PDA WXS tumor CPT0011520006_1 CPT0011520006_1.WholeExome.RP-1303.bam 55645657340 BAM submitted_aligned CPTAC3 db5a4047-cc88-4497-ac9b-8cdbb98f8f78 61d2f9d1fb3dd8624c68972e19c1e23c {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.WXS.T C3L-00277 PDA WXS tumor CPT0011520006 CPT0011520006.WholeExome.RP-1303.bam 25387244764 BAM submitted_aligned CPTAC3 230e1d7b-f89c-42ff-8f51-bd51ce7f1766 0f444882caaa8b78b2474db53567f112 {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.WXS.T.hg38 C3L-00277 PDA WXS tumor CPT0011520006_1 58cdfc92-0d6b-46b3-94dd-28f1a5a247dd_wxs_gdc_realn.bam 76363859370 BAM harmonized CPTAC3 5b6d0cc0-46f2-496c-8d5c-30b5a712ceaa c42b16534537e0a6200d02f457466995 {"aliquot_tag": "ALQ_8befb27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00277.WXS.T.hg38 C3L-00277 PDA WXS tumor CPT0011520006 5d5bbdb1-74e4-4f1d-a025-df1959b77aa1_gdc_realn.bam 34758091873 BAM harmonized CPTAC3 0fc758f7-93a6-40f6-a12a-1fa472439af0 34ba83eefe360258ad925e44eb03138e {"aliquot_tag": "ALQ_b1743301", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.MethArray.Green.A C3L-00279 LUAD Methylation_Array tissue_normal CPT0082770009 203027390034_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c66954a9-b6fb-46c2-a281-eaf582088084 82b4f3347729758c147804dd982e4ad2 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.MethArray.Green.T C3L-00279 LUAD Methylation_Array tumor CPT0082740010 202178770143_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 6472fb36-b647-44c2-9bf4-57453ce681eb 27fb5e82796d8bd41f8eca46d1a55536 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.MethArray.Red.A C3L-00279 LUAD Methylation_Array tissue_normal CPT0082770009 203027390034_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 08d47b87-c26f-4ad4-978b-fd00f868264f f522601c590bbdc5f4ba324e0741ca47 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.MethArray.Red.T C3L-00279 LUAD Methylation_Array tumor CPT0082740010 202178770143_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 11ba1620-6b68-493c-931c-3a1432fa2f62 8550a180617dffe2d5ee8ce6f33c4d81 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.miRNA-Seq.A.hg38 C3L-00279 LUAD miRNA-Seq tissue_normal CPT0082770006 35d8a59b-4e7b-4090-b12d-f2fce976aa35_mirnaseq_gdc_realn.bam 245263335 BAM harmonized CPTAC3 0a55b1b4-b5f2-4037-bf32-49cd0a1a560d 7f3a3d157afab4cc0d4f63143878ee5a {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.miRNA-Seq.S18_L001_R1.T C3L-00279 LUAD miRNA-Seq tumor CPT0082740007 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L001_R1_001.unaln.bam 209147188 BAM S18_L001_R1 submitted_unaligned CPTAC3 498eed2b-842d-4c39-a99c-f105a0b38893 4d0ad81f1818b9dbf727c433023f28bb {"aliquot_tag": "ALQ_2a5c568a", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.miRNA-Seq.S4_L007_R1.A C3L-00279 LUAD miRNA-Seq tissue_normal CPT0082770006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L007_R1_001.unaln.bam 220228592 BAM S4_L007_R1 submitted_unaligned CPTAC3 3c229d35-9491-4ca4-b2c6-2a8223812843 c45f3b3a11cc1510fbd32449a0f8192c {"aliquot_tag": "ALQ_1afb1ccc", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.miRNA-Seq.T.hg38 C3L-00279 LUAD miRNA-Seq tumor CPT0082740007 192a1051-da95-41d3-9ca7-f2704c857f5d_mirnaseq_gdc_realn.bam 234785839 BAM harmonized CPTAC3 b36d884a-fa3c-4cab-ab28-d9fe444d32fd 86c7952b5e9670b9726b9be5f6f9970b {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.RNA-Seq.chimeric.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.chimeric.gdc_realn.bam 83062208 BAM chimeric harmonized CPTAC3 f5f62921-e2aa-4436-a7e8-60850f31affc cd2abe9d5049da5e9b433b255779e377 {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.RNA-Seq.chimeric.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.chimeric.gdc_realn.bam 100666935 BAM chimeric harmonized CPTAC3 33dd46e5-df91-4f8f-9e5e-c42bc33f5cc5 d03048da366074f5236f23d34f883984 {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.RNA-Seq.genomic.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.genomic.gdc_realn.bam 7580237623 BAM genomic harmonized CPTAC3 12397568-ded5-4062-8efe-53a261cb21a5 45489e68f8d747277b389a26a073f719 {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.RNA-Seq.genomic.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.genomic.gdc_realn.bam 9379188414 BAM genomic harmonized CPTAC3 f8b4a8b9-b839-40bc-ac42-2c640d7e2ebf f0c9fc25fcb6f2641ce5650a69771719 {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.RNA-Seq.S10_L003_R1.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 3888955869 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 d2e501fe-3f46-4ec5-9e88-6ac1ebb6cac7 3071b4e394db6d1eac51244b89afe4e0 {"aliquot_tag": "ALQ_2a5c568a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.RNA-Seq.S10_L003_R2.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4222879215 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 2a89b090-c1d9-42a7-b163-5e7b9569b885 de1ddd51f4e424075a8b79c9fd051f37 {"aliquot_tag": "ALQ_2a5c568a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.RNA-Seq.S18_L005_R1.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R1_001.fastq.gz 3747727741 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 98db05ee-1271-42bc-84d4-5e6e88aa7a38 d00cf09e6305a2c7fdad358e0331d485 {"aliquot_tag": "ALQ_1afb1ccc", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.RNA-Seq.S18_L005_R2.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R2_001.fastq.gz 4128870042 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 9d2b72b2-fcc1-4ab9-9f05-57bbd64646d9 6c06c2d73c84403ee106a7a9359e8241 {"aliquot_tag": "ALQ_1afb1ccc", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.RNA-Seq.transcriptome.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.transcriptome.gdc_realn.bam 10466754934 BAM transcriptome harmonized CPTAC3 ed7c6441-9e9a-4274-89eb-d4b226f5c5b2 bc1ae606fcc1a5c5881360755bbe0e95 {"aliquot_tag": "ALQ_1afb1ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.RNA-Seq.transcriptome.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.transcriptome.gdc_realn.bam 10361892037 BAM transcriptome harmonized CPTAC3 001c022d-cc33-42ac-82a5-f27163f80e1c e394db813ed07eb2b6a718bc944bbbf7 {"aliquot_tag": "ALQ_2a5c568a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.WGS.A C3L-00279 LUAD WGS tissue_normal CPT0082770009 CPT0082770009.WholeGenome.RP-1303.bam 56073138564 BAM submitted_aligned CPTAC3 822f400f-0476-4e58-bfb5-fd796b3ef982 ef854be8bfd311bf79101178f62da7aa {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.WGS.A.hg38 C3L-00279 LUAD WGS tissue_normal CPT0082770009 59fb1c78-43fc-40d8-bdb5-4722c0670842_wgs_gdc_realn.bam 82603925963 BAM harmonized CPTAC3 5d8333a3-6e19-45b1-bbe8-a25e3e3d018c 1e52a862fee9631f5d15908165565cea {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.WGS.N C3L-00279 LUAD WGS blood_normal CPT0081730001 CPT0081730001.WholeGenome.RP-1303.bam 87832730629 BAM submitted_aligned CPTAC3 f4d2bb20-9dfa-439f-bcf8-7ead4a6cfa45 21a3fae4812bbe180c3c1fe7774be2a5 {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00279.WGS.N.hg38 C3L-00279 LUAD WGS blood_normal CPT0081730001 65e20a75-5878-465c-b516-43c5169cd45a_gdc_realn.bam 133995229320 BAM harmonized CPTAC3 22224aab-7f41-4ae5-8acd-a93d161cf396 d237f850620456d9df7b1c10574954b5 {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00279.WGS.T C3L-00279 LUAD WGS tumor CPT0082740010 CPT0082740010.WholeGenome.RP-1303.bam 68821389306 BAM submitted_aligned CPTAC3 fe94faf6-43c2-42c7-9d5f-38d4a5eb410d 2907c504ac791440872bbdbfaaf2e58d {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.WGS.T.hg38 C3L-00279 LUAD WGS tumor CPT0082740010 d974bcf0-cacc-4d3c-9ad7-c3851c1e2cb1_gdc_realn.bam 103365534756 BAM harmonized CPTAC3 1942b0b8-95ec-4524-b31c-f0a50f42708f cd4886dbebfc44b02481cbe742232bba {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.WXS.A C3L-00279 LUAD WXS tissue_normal CPT0082770009 CPT0082770009.WholeExome.RP-1303.bam 49620841842 BAM submitted_aligned CPTAC3 563908ac-7ad0-43fb-b22b-3dcac4288abe 4f7078dd9d52d8239599e62bbafeb569 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.WXS.A.hg38 C3L-00279 LUAD WXS tissue_normal CPT0082770009 59fb1c78-43fc-40d8-bdb5-4722c0670842_wxs_gdc_realn.bam 66944844275 BAM harmonized CPTAC3 c6774ea8-e4d7-443d-923b-f128be2ca46f ab01834f008e7dfde505b108f2388681 {"aliquot_tag": "ALQ_8a44015d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00279.WXS.N C3L-00279 LUAD WXS blood_normal CPT0081730001 CPT0081730001.WholeExome.RP-1303.bam 24630195284 BAM submitted_aligned CPTAC3 97a73118-47cd-4efb-9be0-c5a5f8802300 8411595970107816a6f703253b2e216f {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00279.WXS.N.hg38 C3L-00279 LUAD WXS blood_normal CPT0081730001 65e20a75-5878-465c-b516-43c5169cd45a_gdc_realn.bam 33803250245 BAM harmonized CPTAC3 35dc37bc-38cf-4431-a8da-347eb39ce8df 2ee08eb494dc27cdb58bb577118603b0 {"aliquot_tag": "ALQ_40f73532", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00279.WXS.T C3L-00279 LUAD WXS tumor CPT0082740010 CPT0082740010.WholeExome.RP-1303.bam 37022818850 BAM submitted_aligned CPTAC3 2a48e41f-9b72-4b17-b59e-6c5b6faa5b10 7105919ed8e804c190de5d7eef4cd975 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00279.WXS.T.hg38 C3L-00279 LUAD WXS tumor CPT0082740010 d974bcf0-cacc-4d3c-9ad7-c3851c1e2cb1_gdc_realn.bam 52184801332 BAM harmonized CPTAC3 c83272c0-2512-416f-8d44-3b280bd3e8b8 bed6bd356718c9bf3b9e14e46ba79d96 {"aliquot_tag": "ALQ_ad23f268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.ADD_eac742a4.miRNA-Seq.S9_L005_R1.T C3L-00356 UCEC miRNA-Seq tumor CPT0002130006 181012_UNC32-K00270_0124_AH223CBBXY_CCAACA_S9_L005_R1_001.unaln.bam 264043402 BAM S9_L005_R1 submitted_unaligned CPTAC3 fad45b6a-e837-4a4c-b65b-c65f366664bd 45b4263029dcfe885305ddcc6d3b33a0 {"aliquot_tag": "ADD_eac742a4", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.ADD_eac742a4.miRNA-Seq.T.hg38 C3L-00356 UCEC miRNA-Seq tumor CPT0002130006 65b95ebc-7fc3-4a49-b8e8-930e68ad8710_mirnaseq_gdc_realn.bam 294391082 BAM harmonized CPTAC3 f2ee8c90-1600-4fb8-99c8-d0b531bd94a2 694f6e0ede723c5f93aa108710eec8d3 {"aliquot_tag": "ADD_eac742a4", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.MethArray.Green.T C3L-00356 UCEC Methylation_Array tumor CPT0002130009 202178770100_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 01f9e9ac-db9c-4837-90ba-75355af366a7 f2afb3a50b1b8ef9fe91e7110e61ddc7 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.MethArray.Red.T C3L-00356 UCEC Methylation_Array tumor CPT0002130009 202178770100_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 4837df20-40a4-4d73-8c5c-2a14cd71cb0a d304a18a6fe94182844258a201119f83 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.RNA-Seq.chimeric.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.chimeric.gdc_realn.bam 104640104 BAM chimeric harmonized CPTAC3 9ddb2b73-9be2-48e1-a16e-5344c4ad3024 10b07d21d2659886b8f647c0370fca6d {"aliquot_tag": "ALQ_83b6876a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.RNA-Seq.genomic.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.genomic.gdc_realn.bam 13582643997 BAM genomic harmonized CPTAC3 2ee1a0a4-cfe5-4f08-a856-4dda30d08cb1 87a4ddf5cb17c31ee3ed03fa4b6f4caa {"aliquot_tag": "ALQ_83b6876a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.RNA-Seq.S11_L004_R1.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R1_001.fastq.gz 5604511930 FASTQ S11_L004_R1 submitted_unaligned CPTAC3 4b2a33c2-3d9a-405c-9d10-049bed615f1d 09115960c3f3635f2ee6960cfa86f8b8 {"aliquot_tag": "ALQ_83b6876a", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.RNA-Seq.S11_L004_R2.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R2_001.fastq.gz 6002121294 FASTQ S11_L004_R2 submitted_unaligned CPTAC3 2e91202d-2403-4619-8111-5f26fdf879b1 b0da9f1e031dd59cc019bcc05eaad954 {"aliquot_tag": "ALQ_83b6876a", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.RNA-Seq.transcriptome.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.transcriptome.gdc_realn.bam 11120549827 BAM transcriptome harmonized CPTAC3 d2404a74-0221-4f69-ad88-eb2f5298a439 af7d6f69bbd420873811f88343cb35ec {"aliquot_tag": "ALQ_83b6876a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.WGS.N C3L-00356 UCEC WGS blood_normal CPT0004350002 CPT0004350002.WholeGenome.RP-1303.bam 60372526845 BAM submitted_aligned CPTAC3 33cb8f29-0dd7-407b-9ca2-a361b0ecaab7 df40edaaa1c6d8c3a95b610eef8ef255 {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00356.WGS.N.hg38 C3L-00356 UCEC WGS blood_normal CPT0004350002 0d1a19ed-b1f4-4d0f-9eff-5922afcb6cbe_gdc_realn.bam 87764016454 BAM harmonized CPTAC3 8b2d66ef-8fc7-47b4-9717-2dc51259c0a6 808b584f1416372c7fdd76f3baed4b97 {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00356.WGS.T C3L-00356 UCEC WGS tumor CPT0002130009 CPT0002130009.WholeGenome.RP-1303.bam 62730697593 BAM submitted_aligned CPTAC3 ecca9891-f010-4571-99f2-591e8f983772 815a39265891bc7d83e6cfdb480f95b3 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.WGS.T.hg38 C3L-00356 UCEC WGS tumor CPT0002130009 e6e1c2a6-27c3-4d55-87ed-6cd0ab0fd6b6_gdc_realn.bam 91675515120 BAM harmonized CPTAC3 b841bd14-fc26-40a4-b89b-f7fc50cdc513 5ce2ebdf804a04e63051dab669a1a46d {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.WXS.N C3L-00356 UCEC WXS blood_normal CPT0004350002 CPT0004350002.WholeExome.RP-1303.bam 26356186952 BAM submitted_aligned CPTAC3 1a9a81f1-d4f9-4db8-803f-8257efa63abb 32ed9102277e4d4b468f6e01091c7f5f {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00356.WXS.N.hg38 C3L-00356 UCEC WXS blood_normal CPT0004350002 0d1a19ed-b1f4-4d0f-9eff-5922afcb6cbe_gdc_realn.bam 35793766827 BAM harmonized CPTAC3 b94ff0a4-127b-4fac-9a68-2ec50ce6c202 a159a0da836031f987c0d1084c039dd7 {"aliquot_tag": "ALQ_4cf2e72c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00356.WXS.T C3L-00356 UCEC WXS tumor CPT0002130009 CPT0002130009.WholeExome.RP-1303.bam 26328106268 BAM submitted_aligned CPTAC3 26d52a87-1615-499a-8ffc-16729ea129b8 085ca90980ab8d5a60ceba8852f20292 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00356.WXS.T.hg38 C3L-00356 UCEC WXS tumor CPT0002130009 e6e1c2a6-27c3-4d55-87ed-6cd0ab0fd6b6_gdc_realn.bam 36423305103 BAM harmonized CPTAC3 cece60fc-811e-4d03-9f7e-731f0b80212f 00d62ec2cee0878bdc28a571fd1bb609 {"aliquot_tag": "ALQ_7a785f35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.MethArray.Green.T C3L-00358 UCEC Methylation_Array tumor CPT0002210008 202184990013_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 5bf0f27b-fb0e-480b-a461-5a0fb07010a8 7ca1c1209076196f77ba0925bb720cd7 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.MethArray.Red.T C3L-00358 UCEC Methylation_Array tumor CPT0002210008 202184990013_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 2ae3240a-5ddd-4267-a158-02e27793c242 b5d642a979dd2a26e0c0758b7a3c1097 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.miRNA-Seq.S37_L002_R1.T C3L-00358 UCEC miRNA-Seq tumor CPT0002210005 181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L002_R1_001.unaln.bam 221821577 BAM S37_L002_R1 submitted_unaligned CPTAC3 32ab23db-669b-4c4f-83e0-dd2394439677 6779356f6ad79bd5b3cfc85fe30ba9e6 {"aliquot_tag": "ALQ_8f9a32d0", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.miRNA-Seq.T.hg38 C3L-00358 UCEC miRNA-Seq tumor CPT0002210005 79817c85-0532-476f-808f-7898a666d88e_mirnaseq_gdc_realn.bam 240296343 BAM harmonized CPTAC3 b698d69a-25d6-42e5-a6f0-1126e960daab c81cc2012c5647af4ffc31d2b139ded9 {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.chimeric.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.chimeric.gdc_realn.bam 174960065 BAM chimeric harmonized CPTAC3 9f3d0be2-4644-4560-8e45-82643657157b 40d9d238ce6b1c8a2ac409860a302553 {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.chimeric.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.chimeric.gdc_realn.bam 225422123 BAM chimeric harmonized CPTAC3 ebe80478-0721-4dfc-a87a-ad3af1900e20 dd0eee63ac242092ce28af63745a8768 {"aliquot_tag": "ALQ_1a42eb75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.genomic.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.genomic.gdc_realn.bam 7795991252 BAM genomic harmonized CPTAC3 7a112595-0e41-48b1-9116-98230107f6e9 b15e8ed0baf632c089d93d1d23de422d {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.genomic.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.genomic.gdc_realn.bam 12651700339 BAM genomic harmonized CPTAC3 b703471a-e131-4d58-843d-cf842c52f046 5c7783de6480b794de9487fc210465c9 {"aliquot_tag": "ALQ_1a42eb75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.S2_L001_R1.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R1_001.fastq.gz 3627523273 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 9cb3b6ce-7b2a-4225-b0e7-d32d47171740 8b45aa836ca5d2eb4c9973f35f084ceb {"aliquot_tag": "ALQ_8f9a32d0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.S2_L001_R2.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R2_001.fastq.gz 4010917518 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 e9a087df-10b2-498e-90d3-cd60747088b8 61239bd1607ed0691c3e77b6b8b4cf69 {"aliquot_tag": "ALQ_8f9a32d0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.S50_R1.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R1_001.fastq.gz 8061916888 FASTQ S50_R1 submitted_unaligned CPTAC3 66b6b1d6-7e9d-492f-8570-d85868a65f2b 733a6c82b4e61adc47619b4ad40af325 {"aliquot_tag": "ALQ_1a42eb75", "sample": "S50", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.S50_R2.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R2_001.fastq.gz 8453682484 FASTQ S50_R2 submitted_unaligned CPTAC3 d8b10f25-cf80-40cc-a3fe-e742556dfbd3 f9a993f886d3a439bcedb2ba34287223 {"aliquot_tag": "ALQ_1a42eb75", "sample": "S50", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.transcriptome.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.transcriptome.gdc_realn.bam 7751677585 BAM transcriptome harmonized CPTAC3 8de1e515-c337-4ce1-9747-d4257e0f6ed9 ca2a53a402e536e103b733de21ded148 {"aliquot_tag": "ALQ_8f9a32d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.RNA-Seq.transcriptome.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.transcriptome.gdc_realn.bam 8266821493 BAM transcriptome harmonized CPTAC3 6431c0af-6fd1-4d01-9cdb-0defdc5c8d5d f7e53e39ba5869e4d89b42e3aa1c9e93 {"aliquot_tag": "ALQ_1a42eb75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.WGS.N C3L-00358 UCEC WGS blood_normal CPT0004360002 CPT0004360002.WholeGenome.RP-1303.bam 57760979190 BAM submitted_aligned CPTAC3 d9717e6e-907b-43b2-be30-373b71c15f45 53e48324486fb3d19a579e5a187275f6 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00358.WGS.N.hg38 C3L-00358 UCEC WGS blood_normal CPT0004360002 8927cd25-7348-4319-8a9b-248fc0bc8e56_gdc_realn.bam 82314231902 BAM harmonized CPTAC3 bb62f2d2-b146-490a-bc13-b209c265d28d 836ee3fb801a75e299dd150fd9cb9fb5 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00358.WGS.T C3L-00358 UCEC WGS tumor CPT0002210008 CPT0002210008.WholeGenome.RP-1303.bam 63609725003 BAM submitted_aligned CPTAC3 02106d84-e6b8-465a-a063-a4e0e156d8c0 9b17dd421f56ac06ae0b1d844618b857 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.WGS.T.hg38 C3L-00358 UCEC WGS tumor CPT0002210008 ea49ecce-a8c3-410f-987b-07364fee8b18_gdc_realn.bam 92797415662 BAM harmonized CPTAC3 573df828-ddd8-43e5-9dc2-513911ee977f e9e5886106cab48ccb2f6d6178ff22c0 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.WXS.N C3L-00358 UCEC WXS blood_normal CPT0004360002 CPT0004360002.WholeExome.RP-1303.bam 24864786714 BAM submitted_aligned CPTAC3 4a96af62-483c-4bbc-bb86-eb38f5d37251 164f8987fb50c846c644f657e42f6a38 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00358.WXS.N.hg38 C3L-00358 UCEC WXS blood_normal CPT0004360002 8927cd25-7348-4319-8a9b-248fc0bc8e56_gdc_realn.bam 34941943089 BAM harmonized CPTAC3 70b053c6-05af-43b7-8393-bef10a4390a9 2239c348e2be0b164dcfd806ebc26b44 {"aliquot_tag": "ALQ_b529dfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00358.WXS.T C3L-00358 UCEC WXS tumor CPT0002210008 CPT0002210008.WholeExome.RP-1303.bam 22931743863 BAM submitted_aligned CPTAC3 768ceeea-3dfe-4365-81f8-25219f36a8de 122e6128bc08e61dff4b8fb2a6dc439e {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00358.WXS.T.hg38 C3L-00358 UCEC WXS tumor CPT0002210008 ea49ecce-a8c3-410f-987b-07364fee8b18_gdc_realn.bam 31448310154 BAM harmonized CPTAC3 15b5f6c6-6f94-43c2-951c-72df48f24ee2 637adcf4e1eeb0d7b66cd92ee0cbf338 {"aliquot_tag": "ALQ_f12b4e6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.MethArray.Green.T C3L-00359 CCRCC Methylation_Array tumor CPT0002270008 202176300039_R01C01_Grn.idat 13676225 IDAT Green NA CPTAC3 a89361b3-b27a-440c-97cc-f60a679c2cba 328e69a46dbc39a7e11c0dceb7b1a73c {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.MethArray.Red.T C3L-00359 CCRCC Methylation_Array tumor CPT0002270008 202176300039_R01C01_Red.idat 13676225 IDAT Red NA CPTAC3 15d70e8e-f96c-4d54-bb28-8e2796344ef8 220cbf5b37c650d104d6bfb2f92c74db {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.miRNA-Seq.S38_L002_R1.T C3L-00359 CCRCC miRNA-Seq tumor CPT0002270005 181012_UNC32-K00270_0124_AH223CBBXY_GTAGAG_S38_L002_R1_001.unaln.bam 189457572 BAM S38_L002_R1 submitted_unaligned CPTAC3 31af2861-46e8-4151-a58f-43d10ee462f0 c4596c0eaa5e586bda7a1df7ba99efd5 {"aliquot_tag": "ALQ_dac770", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.miRNA-Seq.T.hg38 C3L-00359 CCRCC miRNA-Seq tumor CPT0002270005 7208770e-fb7d-4ba3-8fe9-f457970e5a93_mirnaseq_gdc_realn.bam 206009268 BAM harmonized CPTAC3 650ac773-2699-4276-8545-6d688853fe1b f3ae69bbe4b864e45fcf5bc34689c983 {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.RNA-Seq.chimeric.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.chimeric.gdc_realn.bam 165366678 BAM chimeric harmonized CPTAC3 40f3b415-51a0-4663-8538-1283aaefe8f9 42c8e6dc2bd48b1e987a86567a7cdfc2 {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.RNA-Seq.genomic.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.genomic.gdc_realn.bam 8466214599 BAM genomic harmonized CPTAC3 cf3e24cf-45bc-4202-8c95-392fceaacd63 9737b1ef704b8c09ffde2c2ea7625ead {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.RNA-Seq.S1_L001_R1.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R1_001.fastq.gz 4039086396 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 c073cb50-b34c-44c9-9cd8-8f208cead367 6c29c74f79ce54494d283377e1397496 {"aliquot_tag": "ALQ_dac770", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.RNA-Seq.S1_L001_R2.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R2_001.fastq.gz 4454016060 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 031a45c7-e9b4-40e1-b98c-b8beed82aceb cd054cad63ab3c3e232d253d89d8a078 {"aliquot_tag": "ALQ_dac770", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.RNA-Seq.transcriptome.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.transcriptome.gdc_realn.bam 11666861023 BAM transcriptome harmonized CPTAC3 4647ae5d-25a5-48e5-8f15-0c3d444a6386 8c9ba466d86dd1f968d95059f5f8b70a {"aliquot_tag": "ALQ_dac770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.scRNA-Seq.S2_L002_R1.T C3L-00359 CCRCC scRNA-Seq tumor CPT0002270014 20220127_WUSTL_TWFU-CPT0002270014-Y1N1Z1_1Bn1_1_GCGGGTAAGT+TAGCACTAAG_S2_L002_R1_001.fastq.gz 7547280130 FASTQ S2_L002_R1 submitted_unaligned CPTAC3 d45a535b-43f6-464b-a147-822226dffe47 86f3f2c6ea254f8fc2ea6ae0da4dcc7e {"aliquot_tag": "ALQ_6ec6c6a7", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00359.scRNA-Seq.S2_L002_R2.T C3L-00359 CCRCC scRNA-Seq tumor CPT0002270014 20220127_WUSTL_TWFU-CPT0002270014-Y1N1Z1_1Bn1_1_GCGGGTAAGT+TAGCACTAAG_S2_L002_R2_001.fastq.gz 26570671557 FASTQ S2_L002_R2 submitted_unaligned CPTAC3 f1ac3437-676f-4f1f-9131-2f5c385d4688 ab0617133de2356ec8f3be1da955c50d {"aliquot_tag": "ALQ_6ec6c6a7", "sample": "S2", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00359.WGS.N C3L-00359 CCRCC WGS blood_normal CPT0004370002 CPT0004370002.WholeGenome.RP-1303.bam 57925172115 BAM submitted_aligned CPTAC3 e04ccac1-20a8-4b59-9734-8faa65a50ec4 8499ddb19b7b7bed443def520446675f {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00359.WGS.N.hg38 C3L-00359 CCRCC WGS blood_normal CPT0004370002 20ce17ce-fd19-4ec9-b64a-e95dd78aa155_gdc_realn.bam 84679395846 BAM harmonized CPTAC3 933fff32-75ec-45f1-a2d4-8ac2a99fdd60 2dcf143dc2534b72d14f4a88253f42d1 {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00359.WGS.T C3L-00359 CCRCC WGS tumor CPT0002270008 CPT0002270008.WholeGenome.RP-1303.bam 65220878541 BAM submitted_aligned CPTAC3 d234fee4-2d8e-4948-938e-b67922f1a814 d8900b6aec9d439e3d38b28447d2f701 {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.WGS.T.hg38 C3L-00359 CCRCC WGS tumor CPT0002270008 2eb1196d-5e6d-4223-953c-d558c75a8c2e_gdc_realn.bam 95102675354 BAM harmonized CPTAC3 38b72a67-e3fa-4a28-8000-23a1060e99a6 a91aa206ac1f08dd69b7617794ceaf5e {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.WXS.N C3L-00359 CCRCC WXS blood_normal CPT0004370002 CPT0004370002.WholeExome.RP-1303.bam 25506475593 BAM submitted_aligned CPTAC3 dcd5744a-5938-49a8-bd50-2cc5c3ec1044 35c925d73d9502d0d755a3ad5716bff0 {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00359.WXS.N.hg38 C3L-00359 CCRCC WXS blood_normal CPT0004370002 20ce17ce-fd19-4ec9-b64a-e95dd78aa155_gdc_realn.bam 35162318768 BAM harmonized CPTAC3 84236427-4959-4a6d-8b0a-4f80fcc5ca45 f253077dbeed4d455c406897302d5b92 {"aliquot_tag": "ALQ_3632b44c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00359.WXS.T C3L-00359 CCRCC WXS tumor CPT0002270008 CPT0002270008.WholeExome.RP-1303.bam 27439755361 BAM submitted_aligned CPTAC3 330583e4-6af5-442c-92de-637ea9dd0ec4 80072fe7433fdaa2883f770b57e5b230 {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00359.WXS.T.hg38 C3L-00359 CCRCC WXS tumor CPT0002270008 2eb1196d-5e6d-4223-953c-d558c75a8c2e_gdc_realn.bam 37339559252 BAM harmonized CPTAC3 fb5de978-c7e1-4cf9-b900-71bfed890af5 280f27720c5c8f500105c360b48e1999 {"aliquot_tag": "ALQ_7e6bbbcd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.MethArray.Green.A C3L-00360 CCRCC Methylation_Array tissue_normal CPT0002370014 204930640108_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 92838844-c7d2-47f7-836d-305db581e42a af122801613da8cc52148e5e7603e427 {"aliquot_tag": "ALQ_a59a1502", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.MethArray.Green.T C3L-00360 CCRCC Methylation_Array tumor CPT0002350008 202184990008_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 eb740923-3399-4976-b609-00265c751d18 64836f0fe0a72053ba17ac7e84a9f301 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.MethArray.Red.A C3L-00360 CCRCC Methylation_Array tissue_normal CPT0002370014 204930640108_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 1b600c9c-d890-491f-a3f7-b25088466a78 95b491999cbbc4ba4d4228e60ba27584 {"aliquot_tag": "ALQ_a59a1502", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.MethArray.Red.T C3L-00360 CCRCC Methylation_Array tumor CPT0002350008 202184990008_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6b316965-ed2e-4668-b789-553b96337cde b991c05e83edbd9f3c0e130b34a1dd86 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.miRNA-Seq.A.hg38 C3L-00360 CCRCC miRNA-Seq tissue_normal CPT0002370006 20e9c338-f48e-49c1-b25e-f7973f93b7ae_mirnaseq_gdc_realn.bam 229212354 BAM harmonized CPTAC3 ec619503-194f-43a2-a04a-f6eff9edc5e1 9d89a325b3965559acc930905fc98855 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.miRNA-Seq.S31_L004_R1.A C3L-00360 CCRCC miRNA-Seq tissue_normal CPT0002370006 181108_UNC31-K00269_0163_BH23TVBBXY_CACGAT_S31_L004_R1_001.unaln.bam 203742573 BAM S31_L004_R1 submitted_unaligned CPTAC3 1599f70a-8de2-4f3a-8dd5-906bfa49bbb4 5d425e49b94178155236908705eed651 {"aliquot_tag": "ALQ_528f456f", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.miRNA-Seq.S39_L002_R1.T C3L-00360 CCRCC miRNA-Seq tumor CPT0002350005 181012_UNC32-K00270_0124_AH223CBBXY_GTCCGC_S39_L002_R1_001.unaln.bam 248936204 BAM S39_L002_R1 submitted_unaligned CPTAC3 c48207f6-af02-443a-a0fa-0d27083440d0 3b6509b0cb1508abd72c782697f18d11 {"aliquot_tag": "ALQ_b14647b5", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.miRNA-Seq.T.hg38 C3L-00360 CCRCC miRNA-Seq tumor CPT0002350005 8cb2643c-ddee-478d-91cc-62e00ad4cfad_mirnaseq_gdc_realn.bam 276311003 BAM harmonized CPTAC3 76e65f35-c7fe-4b13-8458-910c428b7fc0 fb225c0db2f1522e2cc4b07d132e6802 {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.RNA-Seq.chimeric.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.chimeric.gdc_realn.bam 67214306 BAM chimeric harmonized CPTAC3 566dc661-0b18-4cac-abc7-97553b9edbe8 85c3f46f649931972d1e18bbc03ca2d9 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.RNA-Seq.chimeric.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.chimeric.gdc_realn.bam 108781022 BAM chimeric harmonized CPTAC3 6e14be8a-c0a6-475c-9920-63e63c221e8c 182014c2fed45a19b4a521c6796fa78e {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.RNA-Seq.genomic.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.genomic.gdc_realn.bam 6503036850 BAM genomic harmonized CPTAC3 82f30976-bcf5-4152-848f-6fa1a687873f 83eaff064e52da658ecede7ca76fed81 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.RNA-Seq.genomic.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.genomic.gdc_realn.bam 8256258590 BAM genomic harmonized CPTAC3 e4a85fd2-101f-43ca-a2d8-dc5e20dad70a 7e0296ebc3da5695c52a347e9f77b6a9 {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.RNA-Seq.S4_L001_R1.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4047258213 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 612b312e-cad7-4343-a5de-70aa004a2f76 6f2a787d860058409cb0e7ef613f145a {"aliquot_tag": "ALQ_b14647b5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.RNA-Seq.S4_L001_R2.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4427141226 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 a51b7537-6e96-4915-a318-2635338a0c86 775817174fe529fa7c17bb437491daf1 {"aliquot_tag": "ALQ_b14647b5", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.RNA-Seq.S50_L006_R1.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R1_001.fastq.gz 3411320093 FASTQ S50_L006_R1 submitted_unaligned CPTAC3 c828fde4-aec4-4a4c-8f3b-40850c03004e d236c97e9b2ef882ef81ad12ae94bd47 {"aliquot_tag": "ALQ_528f456f", "sample": "S50", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.RNA-Seq.S50_L006_R2.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R2_001.fastq.gz 3647868189 FASTQ S50_L006_R2 submitted_unaligned CPTAC3 b6786e42-a506-498d-9978-99028e70cf73 3b459cb22134a2ef1e5b1743be6b6ec1 {"aliquot_tag": "ALQ_528f456f", "sample": "S50", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.RNA-Seq.transcriptome.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.transcriptome.gdc_realn.bam 7964194482 BAM transcriptome harmonized CPTAC3 f5cf43a4-ae4a-4cd1-9d2f-7a42715095fe df966c7a565b89ed846cc62b123d3b95 {"aliquot_tag": "ALQ_528f456f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.RNA-Seq.transcriptome.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.transcriptome.gdc_realn.bam 10523403055 BAM transcriptome harmonized CPTAC3 df64cd3c-c39b-4b85-9b47-463b5b38555c b320006d620da8b11ca611b2c75ff5ee {"aliquot_tag": "ALQ_b14647b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.WGS.A C3L-00360 CCRCC WGS tissue_normal CPT0002370009 CPT0002370009.WholeGenome.RP-1303.bam 54772091219 BAM submitted_aligned CPTAC3 205e6833-4e12-4b82-88ac-9dc08bbad304 d4a99bf0f238c043858c82cc060486b1 {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.WGS.A.hg38 C3L-00360 CCRCC WGS tissue_normal CPT0002370009 3f5476f7-fc0c-4455-a55d-6ffc6a4e02b5_wgs_gdc_realn.bam 79956048951 BAM harmonized CPTAC3 4f2101d9-2938-48b8-976b-51e1a353ee07 36f21b4079e895bc5146ef47e645c884 {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.WGS.N C3L-00360 CCRCC WGS blood_normal CPT0004380002 CPT0004380002.WholeGenome.RP-1303.bam 78414656248 BAM submitted_aligned CPTAC3 7e1a183a-f96f-4177-a3ae-52b12139bc9b 1f9f2b904c4b0c0bb0585bf94fbc4015 {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00360.WGS.N.hg38 C3L-00360 CCRCC WGS blood_normal CPT0004380002 d370264e-8815-4dee-994f-7613984b621a_gdc_realn.bam 117087952595 BAM harmonized CPTAC3 6d047204-7723-4ef2-9b91-f16ed91c0eca f979247d5fd7e7fd79aac5f328522244 {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00360.WGS.T C3L-00360 CCRCC WGS tumor CPT0002350008 CPT0002350008.WholeGenome.RP-1303.bam 59747272963 BAM submitted_aligned CPTAC3 468e1d5b-2bb2-4dc7-b0db-ce9f7a94973b a07f6a91143f090ab56bc7baea61a418 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.WGS.T.hg38 C3L-00360 CCRCC WGS tumor CPT0002350008 a7108f05-c999-4aee-99a4-0412405cba81_gdc_realn.bam 88573586352 BAM harmonized CPTAC3 c9871d5b-d000-4fad-a0cb-f3e9b5138a18 c8bc269fcdb2b83e5661e5cfe70ce674 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.WXS.A C3L-00360 CCRCC WXS tissue_normal CPT0002370009 CPT0002370009.WholeExome.RP-1303.bam 32512914204 BAM submitted_aligned CPTAC3 86d0d52c-b823-4308-93bf-8bf53b0e8179 28a0a6760d82a335df14781d67f340f7 {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.WXS.A.hg38 C3L-00360 CCRCC WXS tissue_normal CPT0002370009 3f5476f7-fc0c-4455-a55d-6ffc6a4e02b5_wxs_gdc_realn.bam 44521519512 BAM harmonized CPTAC3 5ecc82de-4ccb-4c37-a3f4-dd908d9353bd 6e8b8907d3cd158585f79deb10f9f5ae {"aliquot_tag": "ALQ_c23058fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00360.WXS.N C3L-00360 CCRCC WXS blood_normal CPT0004380002 CPT0004380002.WholeExome.RP-1303.bam 36427633165 BAM submitted_aligned CPTAC3 bd88d750-afd9-4de2-9241-989d0bac76c9 1f3f504db3c30136f2b1477fdd9be0af {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00360.WXS.N.hg38 C3L-00360 CCRCC WXS blood_normal CPT0004380002 d370264e-8815-4dee-994f-7613984b621a_gdc_realn.bam 49558189942 BAM harmonized CPTAC3 b673a990-47db-4b4a-813a-575546df2de3 9dd4d81209dc9d83bcddc8a07c91e4d8 {"aliquot_tag": "ALQ_b462239d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00360.WXS.T C3L-00360 CCRCC WXS tumor CPT0002350008 CPT0002350008.WholeExome.RP-1303.bam 26427184361 BAM submitted_aligned CPTAC3 618fa734-7747-4e58-854f-10f03f91ddb7 9ffab05e6a5171324eb9969f5176d761 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00360.WXS.T.hg38 C3L-00360 CCRCC WXS tumor CPT0002350008 a7108f05-c999-4aee-99a4-0412405cba81_gdc_realn.bam 36945178660 BAM harmonized CPTAC3 b96b1dd9-08c3-4efb-9f24-9e725a2a9bf4 dd4580b00cb8dd95c29da0e56bdde0e3 {"aliquot_tag": "ALQ_cff73b08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.MethArray.Green.T C3L-00361 UCEC Methylation_Array tumor CPT0002430008 202178770111_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 50ed7b2d-110d-40d5-afbf-4d0f0b43dea0 857f238af5b82d5c71a52b6146c4fb2b {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.MethArray.Red.T C3L-00361 UCEC Methylation_Array tumor CPT0002430008 202178770111_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 5693fe81-ef12-4862-8045-3ec5a9fc5a0a 5d0d7b93d7ab288ebcbc3191f202f708 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.miRNA-Seq.A.hg38 C3L-00361 UCEC miRNA-Seq tissue_normal CPT0002450006 85d973dd-9126-4757-9da9-249a1672a302_mirnaseq_gdc_realn.bam 272509955 BAM harmonized CPTAC3 c0b05a45-0461-4470-8b4c-583bdf7790b4 21790b8e9658e2ccca1345da7f746f40 {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.miRNA-Seq.S38_L004_R1.T C3L-00361 UCEC miRNA-Seq tumor CPT0002430005 181113_UNC31-K00269_0164_AH23NNBBXY_AGTTCC_S38_L004_R1_001.unaln.bam 216368635 BAM S38_L004_R1 submitted_unaligned CPTAC3 149dafd1-2292-40a9-953a-a78daa4e8da2 3b1195603375418b3c4753f2cac717bb {"aliquot_tag": "ALQ_230382ad", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.miRNA-Seq.S3_L006_R1.A C3L-00361 UCEC miRNA-Seq tissue_normal CPT0002450006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L006_R1_001.unaln.bam 241020243 BAM S3_L006_R1 submitted_unaligned CPTAC3 cdf15b8d-33e8-4bb2-92b9-b8d7a46f0196 2070d932c4cd3ee9b6441925714ea033 {"aliquot_tag": "ALQ_354a26b7", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.miRNA-Seq.T.hg38 C3L-00361 UCEC miRNA-Seq tumor CPT0002430005 702cf184-69e8-49dd-a676-8928674e9e30_mirnaseq_gdc_realn.bam 241346400 BAM harmonized CPTAC3 4c39a2c1-330e-4f47-9147-9b8e48971ac0 3e726552f754405a72a5d4c103d59075 {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.chimeric.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.chimeric.gdc_realn.bam 83181310 BAM chimeric harmonized CPTAC3 7e21bfab-1f32-4b0c-86c3-9af2f9fea9a3 9dd36e3ee13b1beeec44be7ca845937d {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.RNA-Seq.chimeric.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.chimeric.gdc_realn.bam 72068577 BAM chimeric harmonized CPTAC3 64bde912-869f-465d-821c-cfe8a17cb9d0 ae6c0469bf828f4e4dcab0b6c192dd21 {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.chimeric.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.chimeric.gdc_realn.bam 150511531 BAM chimeric harmonized CPTAC3 c8b7bac9-d98b-473b-b300-69a3812cff50 01fca99505c2147d20d6565066cfccb3 {"aliquot_tag": "ALQ_aca6d21a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.genomic.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.genomic.gdc_realn.bam 8318240035 BAM genomic harmonized CPTAC3 78585552-9475-4781-b81a-95c1af3ba105 2b85d4ee144f79a9cbebb8b34d5ef825 {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.RNA-Seq.genomic.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.genomic.gdc_realn.bam 8835704503 BAM genomic harmonized CPTAC3 19bff5fc-d2dd-405e-9c30-731608412cda 17cd2af7d782459757c71503c5ddf879 {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.genomic.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.genomic.gdc_realn.bam 7958982536 BAM genomic harmonized CPTAC3 5918f830-d949-411b-b0b4-419963827a45 45c69980e829863bede655610a69c9af {"aliquot_tag": "ALQ_aca6d21a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.S12_L004_R1.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4230350271 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 d1c64f6f-aa85-463a-8773-69513cad82a7 50e7dbeb7f8ca22ed5b486b70bbebada {"aliquot_tag": "ALQ_230382ad", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.S12_L004_R2.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4666475221 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 c0cbd504-5d93-4f9d-bb5a-1cbe602f2a3d d0372523440b4b20434bab5697e1ada2 {"aliquot_tag": "ALQ_230382ad", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.S19_R1.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R1_001.fastq.gz 4966495044 FASTQ S19_R1 submitted_unaligned CPTAC3 cf665016-f9e0-4318-a158-97e8aeab1ff0 b8e4e9893d5ed174534bb70d6500ba6c {"aliquot_tag": "ALQ_aca6d21a", "sample": "S19", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.S19_R2.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R2_001.fastq.gz 5103386752 FASTQ S19_R2 submitted_unaligned CPTAC3 f70c4768-08e0-419f-a833-30374e1d6383 63c1034f1c028645d11ce50b8a5ba760 {"aliquot_tag": "ALQ_aca6d21a", "sample": "S19", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.S5_L002_R1.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R1_001.fastq.gz 3814374193 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 2bb0bf8f-ed23-4cc6-aaa6-f36f1d0811ab eccbf7dbf3be976626a875da5632c951 {"aliquot_tag": "ALQ_354a26b7", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.RNA-Seq.S5_L002_R2.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R2_001.fastq.gz 4351412567 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 6c30343e-37cb-40c2-898e-44c3125b5afd 1a1afe17633f93fb71d116972cf3db60 {"aliquot_tag": "ALQ_354a26b7", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.RNA-Seq.transcriptome.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.transcriptome.gdc_realn.bam 10337354686 BAM transcriptome harmonized CPTAC3 48050869-89a2-4715-bdda-78eb8e4d564f 5f62bc3fce229ff416e1c74bcc543429 {"aliquot_tag": "ALQ_354a26b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.RNA-Seq.transcriptome.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.transcriptome.gdc_realn.bam 9857137428 BAM transcriptome harmonized CPTAC3 fcfa21a6-2bac-4e5e-9522-b1036c472920 3330c854c76d966b3b0cc949d51020df {"aliquot_tag": "ALQ_230382ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.RNA-Seq.transcriptome.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.transcriptome.gdc_realn.bam 4028673360 BAM transcriptome harmonized CPTAC3 7cc8c798-d143-4c5f-a020-9b0b53db2187 7752dd842c2e9352057f51370939de48 {"aliquot_tag": "ALQ_aca6d21a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.WGS.A C3L-00361 UCEC WGS tissue_normal CPT0002450009 CPT0002450009.WholeGenome.RP-1303.bam 62097807058 BAM submitted_aligned CPTAC3 b8f00e54-fe4d-4eaf-bef3-26929ab348b3 44139d09951ae5d8d32fe7cd0df21786 {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.WGS.A.hg38 C3L-00361 UCEC WGS tissue_normal CPT0002450009 c2d3b52e-1e55-4d90-9dba-1b608de38b9b_wgs_gdc_realn.bam 92790473045 BAM harmonized CPTAC3 627dd9e0-a5a8-4744-a3e8-fcc6958021d7 d624f13a6979f94032c9259008b422b3 {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.WGS.N C3L-00361 UCEC WGS blood_normal CPT0004400002 CPT0004400002.WholeGenome.RP-1303.bam 62927689569 BAM submitted_aligned CPTAC3 32e51e53-9a3f-4f71-8517-2313f006ffc8 9991c982dcea99a3089c9c445a16db99 {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00361.WGS.N.hg38 C3L-00361 UCEC WGS blood_normal CPT0004400002 7df399c7-9281-4eb1-8e1b-9d88c80e5881_gdc_realn.bam 91896924902 BAM harmonized CPTAC3 294e6bb9-3965-42e0-8a2b-d954c16990f0 c3b578fdc1f344bcb9fef812a75b78dc {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00361.WGS.T C3L-00361 UCEC WGS tumor CPT0002430008 CPT0002430008.WholeGenome.RP-1303.bam 59369115660 BAM submitted_aligned CPTAC3 c3255cef-dfb8-43b7-89a4-741be1ec457b 78029aa68780d32f699cc1d25661662b {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.WGS.T.hg38 C3L-00361 UCEC WGS tumor CPT0002430008 8c244af7-4d0a-447d-8da2-af9d147718aa_gdc_realn.bam 87114823810 BAM harmonized CPTAC3 47f3fed4-4116-4843-9843-0ab433dad9a4 284a7ee8f7ba724a0c9cf205807ae708 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.WXS.A C3L-00361 UCEC WXS tissue_normal CPT0002450009 CPT0002450009.WholeExome.RP-1303.bam 30586780355 BAM submitted_aligned CPTAC3 7081dcb6-fb9d-4205-93fd-974c60de9de8 7283e6a039a4f47846dc20866a463438 {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.WXS.A.hg38 C3L-00361 UCEC WXS tissue_normal CPT0002450009 c2d3b52e-1e55-4d90-9dba-1b608de38b9b_wxs_gdc_realn.bam 41100600616 BAM harmonized CPTAC3 ca79e6ba-8198-4193-9670-6fa669fe2751 eb9a49cdef33dc196b3444e8385d7b5e {"aliquot_tag": "ALQ_a5f53b26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00361.WXS.N C3L-00361 UCEC WXS blood_normal CPT0004400002 CPT0004400002.WholeExome.RP-1303.bam 27744748115 BAM submitted_aligned CPTAC3 78abd9b6-8c68-4ddc-8216-1725bb3928a6 22ea1ae619617181d880cf9f2d07d0fd {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00361.WXS.N.hg38 C3L-00361 UCEC WXS blood_normal CPT0004400002 7df399c7-9281-4eb1-8e1b-9d88c80e5881_gdc_realn.bam 38157277616 BAM harmonized CPTAC3 9c34aa06-3655-49af-86ea-83132b1eb953 36624d0d0bc6328241b6e78e8705e316 {"aliquot_tag": "ALQ_991758e4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00361.WXS.T C3L-00361 UCEC WXS tumor CPT0002430008 CPT0002430008.WholeExome.RP-1303.bam 26772221243 BAM submitted_aligned CPTAC3 ada10dfa-45ec-42c5-94ef-f38364736db2 1e230f12e975aec26225d2b90d694cf5 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00361.WXS.T.hg38 C3L-00361 UCEC WXS tumor CPT0002430008 8c244af7-4d0a-447d-8da2-af9d147718aa_gdc_realn.bam 36892920165 BAM harmonized CPTAC3 15474b0b-f26e-4516-80ec-aca7986d8282 6f59c1ec246dbd1efba12188196e39a1 {"aliquot_tag": "ALQ_5db2fe10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.MethArray.Green.T C3L-00362 UCEC Methylation_Array tumor CPT0002500008 202184900105_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 721df2ff-3aa9-43e5-81ac-239df5f5034e b99be21e082907ec59f610c30df8cd64 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.MethArray.Red.T C3L-00362 UCEC Methylation_Array tumor CPT0002500008 202184900105_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 3410f9e9-fad9-4a67-8bdc-91a44497aa09 0143a66f9d6d3815a15840d531cad5a8 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.miRNA-Seq.S40_L002_R1.T C3L-00362 UCEC miRNA-Seq tumor CPT0002500005 181012_UNC32-K00270_0124_AH223CBBXY_GTGGCC_S40_L002_R1_001.unaln.bam 174299045 BAM S40_L002_R1 submitted_unaligned CPTAC3 ef5fddd1-3051-4ff8-94d0-2e6eca045fba c503beebe8980ab9fd3049e4ea66eb41 {"aliquot_tag": "ALQ_afff2bd8", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.miRNA-Seq.T.hg38 C3L-00362 UCEC miRNA-Seq tumor CPT0002500005 95c249fb-5a5b-4d79-93a6-f06938b7d0c0_mirnaseq_gdc_realn.bam 187844656 BAM harmonized CPTAC3 44575c0d-66ab-47d3-bbde-63dcfebea759 c73fddc48729fdf140283ad480853b42 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.chimeric.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.chimeric.gdc_realn.bam 115514849 BAM chimeric harmonized CPTAC3 aa95fa92-06a2-4ac9-b3bf-82bf17e0aa3a 265b9330d3b33d661d095ef0538c1639 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.chimeric.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.chimeric.gdc_realn.bam 184232820 BAM chimeric harmonized CPTAC3 4cbccd6c-4072-4f0d-8ea5-a4363c6bab6f 71ab8e3d033744da522c6573f1fa2a44 {"aliquot_tag": "ALQ_64465d6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.genomic.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.genomic.gdc_realn.bam 7441586660 BAM genomic harmonized CPTAC3 c9b3ea0a-21c2-415b-b0c6-4e2776c22184 565a3f70b242de7a00bb6e4556d5c110 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.genomic.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.genomic.gdc_realn.bam 10452182682 BAM genomic harmonized CPTAC3 3b1fed78-3e04-4a94-9510-0e223fece498 34aa58ce199855ce29e24a9ed9706e62 {"aliquot_tag": "ALQ_64465d6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.S62_R1.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R1_001.fastq.gz 6810927312 FASTQ S62_R1 submitted_unaligned CPTAC3 437dd343-d1c5-4221-93d4-a6267458b716 b2189a4f48b2ca509fde512d0981eb21 {"aliquot_tag": "ALQ_64465d6a", "sample": "S62", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.S62_R2.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R2_001.fastq.gz 7074047662 FASTQ S62_R2 submitted_unaligned CPTAC3 87ec48f8-0fb1-47c9-a167-e4559e4b3203 1f7544aa1343eb90d5be7490f108a8ad {"aliquot_tag": "ALQ_64465d6a", "sample": "S62", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.S6_L004_R1.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R1_001.fastq.gz 3723944064 FASTQ S6_L004_R1 submitted_unaligned CPTAC3 638dd879-a5ee-437c-9f30-c97dcfa19a09 713eaba1f82c2f8be83e77110ac94e69 {"aliquot_tag": "ALQ_afff2bd8", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.S6_L004_R2.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R2_001.fastq.gz 4179158272 FASTQ S6_L004_R2 submitted_unaligned CPTAC3 a02f460b-1cbd-4c92-a5ef-9928088c8c1e 5c299c57ea2cf59ecc87209391d5608c {"aliquot_tag": "ALQ_afff2bd8", "sample": "S6", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.transcriptome.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.transcriptome.gdc_realn.bam 8468250505 BAM transcriptome harmonized CPTAC3 5e7cef2b-4931-4255-a748-4e3f4c9e9c82 868059ae6c8ad98de4af392481e5dc03 {"aliquot_tag": "ALQ_afff2bd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.RNA-Seq.transcriptome.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.transcriptome.gdc_realn.bam 5939483357 BAM transcriptome harmonized CPTAC3 6456abc0-9881-44fe-9112-497d2e1e5e7f 86a117791657af9c1ba91627af1d561a {"aliquot_tag": "ALQ_64465d6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.WGS.N C3L-00362 UCEC WGS blood_normal CPT0002850002 CPT0002850002.WholeGenome.RP-1303.bam 63124633407 BAM submitted_aligned CPTAC3 0e98f024-52ac-4b53-9d4d-24d10982e0cc 4f66b04676a626c00576bdc3489db389 {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00362.WGS.N.hg38 C3L-00362 UCEC WGS blood_normal CPT0002850002 fabf7d4a-34b3-4c27-8921-035cace2795b_gdc_realn.bam 91996324718 BAM harmonized CPTAC3 40d09165-a271-453d-9bd0-1f6056b7b83d 6055763a132ca42fe3b194bdd3729e9e {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00362.WGS.T C3L-00362 UCEC WGS tumor CPT0002500008 CPT0002500008.WholeGenome.RP-1303.bam 71327810996 BAM submitted_aligned CPTAC3 1d04a0bc-d3f9-4b46-9328-7d8ca2e18176 f338de6c989d1cafd4fa0c7207a8dae3 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.WGS.T.hg38 C3L-00362 UCEC WGS tumor CPT0002500008 cc81280d-f906-4e45-a988-000aeb16fcdf_gdc_realn.bam 104618646070 BAM harmonized CPTAC3 3af7e6a3-594d-4830-a5ea-cef88e23f906 6e2d3322b28d5e2b48728cd5570fe317 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.WXS.N C3L-00362 UCEC WXS blood_normal CPT0002850002 CPT0002850002.WholeExome.RP-1303.bam 41276770981 BAM submitted_aligned CPTAC3 cab67bf8-4e1d-4b29-a729-5de136ec0ae3 e6409bd6bc2ce03988937890491cd5fb {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00362.WXS.N.hg38 C3L-00362 UCEC WXS blood_normal CPT0002850002 fabf7d4a-34b3-4c27-8921-035cace2795b_gdc_realn.bam 56310775407 BAM harmonized CPTAC3 20d5f472-7ada-4026-ad90-c4aee6490d47 4e89c45a10989e95a6eb90c6e372d14b {"aliquot_tag": "ALQ_45e522d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00362.WXS.T C3L-00362 UCEC WXS tumor CPT0002500008 CPT0002500008.WholeExome.RP-1303.bam 33589971678 BAM submitted_aligned CPTAC3 da57cb9d-9259-4263-85d9-c3289cd1e2d6 bc9be4d459450f4932a90e4a03d99b50 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00362.WXS.T.hg38 C3L-00362 UCEC WXS tumor CPT0002500008 cc81280d-f906-4e45-a988-000aeb16fcdf_gdc_realn.bam 46023406543 BAM harmonized CPTAC3 e297322a-2b1a-4610-a5d7-bb31fffd07bc 7836abe46932cf5b89f0cf010abad428 {"aliquot_tag": "ALQ_d14e5765", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.MethArray.Green.T C3L-00365 GBM Methylation_Array tumor CPT0002410008 202184990057_R06C01_Grn.idat 13676218 IDAT Green NA CPTAC3 cadf61f2-6afa-4c79-8e4c-5fc3e279e944 2e2d693b0ea7291e74f1c7179d794911 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.MethArray.Red.T C3L-00365 GBM Methylation_Array tumor CPT0002410008 202184990057_R06C01_Red.idat 13676218 IDAT Red NA CPTAC3 784c1981-e44d-456c-81c3-fb12c3f39e33 2c718865e37184762184374fb9175f5f {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.miRNA-Seq.S2_L003_R1.T C3L-00365 GBM miRNA-Seq tumor CPT0002410013 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L003_R1_001.unaln.bam 323705739 BAM S2_L003_R1 submitted_unaligned CPTAC3 a2b8dfda-39b4-442f-830a-424f7b5deac9 ce1ffd3167006d515cb3850f5d980f4a {"aliquot_tag": "ALQ_a9bb45b9", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.miRNA-Seq.T.hg38 C3L-00365 GBM miRNA-Seq tumor CPT0002410013 12930ba9-7a07-49a0-b399-419c7f2e972f_mirnaseq_gdc_realn.bam 364603447 BAM harmonized CPTAC3 9fc84e89-b538-4439-ba11-e9e81d9f78dc 6e822ae662e19f6a01e951a88266922d {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.RNA-Seq.chimeric.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.chimeric.gdc_realn.bam 134764796 BAM chimeric harmonized CPTAC3 f5d7855a-dc89-4580-913f-8b081ba5619f aa61fa388d39a9b0ff84d4efaac5ba33 {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.RNA-Seq.genomic.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.genomic.gdc_realn.bam 9238517517 BAM genomic harmonized CPTAC3 0630b56c-7dc4-453a-ac77-6b7871bf6fc0 ec1529ec7003043a828289da95b6faf3 {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.RNA-Seq.S9_L006_R1.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R1_001.fastq.gz 4305229627 FASTQ S9_L006_R1 submitted_unaligned CPTAC3 c44ed7f2-1622-46de-804c-9611500c3fc0 058c5ec317bc0f07be1ed923b76bab1f {"aliquot_tag": "ALQ_a9bb45b9", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.RNA-Seq.S9_L006_R2.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R2_001.fastq.gz 4633365552 FASTQ S9_L006_R2 submitted_unaligned CPTAC3 1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce e856937adfb077b937ca1e202a6dddd8 {"aliquot_tag": "ALQ_a9bb45b9", "sample": "S9", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.RNA-Seq.transcriptome.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.transcriptome.gdc_realn.bam 10531131546 BAM transcriptome harmonized CPTAC3 3f7a96f5-7cf3-4865-9d77-596dc181c697 19842b89cfa9da71effdc7e2fd947b02 {"aliquot_tag": "ALQ_a9bb45b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.WGS.N C3L-00365 GBM WGS blood_normal CPT0004390002 CPT0004390002.WholeGenome.RP-1303.bam 84728590605 BAM submitted_aligned CPTAC3 68cf4fa0-f1a1-4a08-aeb8-793af612f3aa 08ff7689a75e149393259ff5bab7f816 {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00365.WGS.N.hg38 C3L-00365 GBM WGS blood_normal CPT0004390002 1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 125945749891 BAM harmonized CPTAC3 4d6b2cf2-0e59-4d7e-8189-7ce030358a1e eb54f7be7de7ec32c383815dc26e68f0 {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00365.WGS.T C3L-00365 GBM WGS tumor CPT0002410008 CPT0002410008.WholeGenome.RP-1303.bam 83399791975 BAM submitted_aligned CPTAC3 a6fd34ee-2604-4612-bcc9-eef132918cee e2cc0cb00083ed1ca79f89f924a800e1 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.WGS.T.hg38 C3L-00365 GBM WGS tumor CPT0002410008 fded09b0-7908-4f9f-9f43-b3e8833bf39e_gdc_realn.bam 120800504632 BAM harmonized CPTAC3 0976b529-4cf1-4ce0-9777-5700dc51cede 1f5531986769a0657e884abfb1018431 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.WXS.N C3L-00365 GBM WXS blood_normal CPT0004390002 CPT0004390002.WholeExome.RP-1303.bam 28839874946 BAM submitted_aligned CPTAC3 b5a53750-bc0a-488f-89f0-97aadc8fffc5 b19a7134e4dd6f1b14510a2c0ae458f8 {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00365.WXS.N.hg38 C3L-00365 GBM WXS blood_normal CPT0004390002 1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 40164206329 BAM harmonized CPTAC3 4439be55-0fe8-4392-b430-fa195ca046a8 7c3a6f0e6dcd63cb301598825b477c1b {"aliquot_tag": "ALQ_89020a2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00365.WXS.T C3L-00365 GBM WXS tumor CPT0002410008 CPT0002410008.WholeExome.RP-1303.bam 24302982536 BAM submitted_aligned CPTAC3 6e2d402d-0216-4fe7-b758-a364bfc09808 e31a9d6357e49ffb4205257f31b4498c {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00365.WXS.T.hg38 C3L-00365 GBM WXS tumor CPT0002410008 fded09b0-7908-4f9f-9f43-b3e8833bf39e_gdc_realn.bam 33672976359 BAM harmonized CPTAC3 b86f23ec-d40a-46e3-af36-f0529449ea22 52fb45fe60b3f2a2b7cf4840444c77a5 {"aliquot_tag": "ALQ_2772ad70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.MethArray.Green.A C3L-00368 LUAD Methylation_Array tissue_normal CPT0063750009 203027390081_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f985071e-c654-4846-bfe3-c84176446eb8 1204da90b010fa91d3e2d49ecd93335b {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.MethArray.Green.T C3L-00368 LUAD Methylation_Array tumor CPT0063730006 202178770045_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 1ce25fe7-0600-46ce-bff8-8355b11394f1 097ddd6da51eb5c630133ceba351fcd3 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.MethArray.Red.A C3L-00368 LUAD Methylation_Array tissue_normal CPT0063750009 203027390081_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 9adbedec-6de7-4b24-9b46-14fe22689d76 e7185bb0f85c38a294bf2758b44e202c {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.MethArray.Red.T C3L-00368 LUAD Methylation_Array tumor CPT0063730006 202178770045_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 741c4a4a-3377-4e71-a802-c230202b0e4b 17b6b3768b55a8cc131c42655382043e {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.miRNA-Seq.A.hg38 C3L-00368 LUAD miRNA-Seq tissue_normal CPT0063750006 8a26268d-4fc1-4f53-84fc-99efdc9dbffb_mirnaseq_gdc_realn.bam 201200028 BAM harmonized CPTAC3 8a7f8894-1f8c-43a4-bfb0-3edafb67119d 2d800976dc8640bc1396ffa799348929 {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.miRNA-Seq.S10_L003_R1.T C3L-00368 LUAD miRNA-Seq tumor CPT0063730009 180924_UNC31-K00269_0154_AHWTMLBBXX_GTTTCG_S10_L003_R1_001.unaln.bam 184782157 BAM S10_L003_R1 submitted_unaligned CPTAC3 3d8ac9e6-3fec-4940-840d-8637bf570790 e5b103c579acc41de4a400d6ababc661 {"aliquot_tag": "ALQ_cc39be1b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.miRNA-Seq.S34_L002_R1.A C3L-00368 LUAD miRNA-Seq tissue_normal CPT0063750006 181108_UNC31-K00269_0163_BH23TVBBXY_CATGGC_S34_L002_R1_001.unaln.bam 175238655 BAM S34_L002_R1 submitted_unaligned CPTAC3 2920d38e-e089-4e97-803e-f2a634f9127d 423c902b6a04a7cf1795b3dbdc3e416c {"aliquot_tag": "ALQ_d3c6562a", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.miRNA-Seq.T.hg38 C3L-00368 LUAD miRNA-Seq tumor CPT0063730009 02170c19-619f-4aa1-aa80-dbd0ec624295_mirnaseq_gdc_realn.bam 204052767 BAM harmonized CPTAC3 011aa56d-9e75-4f69-bd7a-e8b9734c4f17 6913d5de56e013820257e765c1b3491c {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.RNA-Seq.chimeric.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.chimeric.gdc_realn.bam 47693097 BAM chimeric harmonized CPTAC3 db20d986-c5b2-4574-8930-f11c40de6ea6 d6e213a37d427f990502436f133f5293 {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.RNA-Seq.chimeric.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.chimeric.gdc_realn.bam 29752863 BAM chimeric harmonized CPTAC3 81247107-fe31-41c3-a037-f1fa313a01ad be16f674cfc670810fc09a3f59415937 {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.RNA-Seq.genomic.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.genomic.gdc_realn.bam 5491966389 BAM genomic harmonized CPTAC3 d938d19c-4d5c-4387-9400-591569fcec9a 861911a8fdcd2006a3c352b1207a8417 {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.RNA-Seq.genomic.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.genomic.gdc_realn.bam 8878353190 BAM genomic harmonized CPTAC3 9f2aed97-36c5-4c3e-a87c-da4908409163 c94521b636766655f9657ceb1392516a {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.RNA-Seq.S1_L007_R1.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R1_001.fastq.gz 2812587486 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 bc417a64-b28b-4b98-bceb-72290423edab 426ca13ff6c5d52900ecd4b1b2e34f45 {"aliquot_tag": "ALQ_d3c6562a", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.RNA-Seq.S1_L007_R2.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R2_001.fastq.gz 2954299519 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 d2677613-eac0-454b-bae2-d617f4d4499d b5570f80060e787e5bd976119c3dc60c {"aliquot_tag": "ALQ_d3c6562a", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.RNA-Seq.S8_L008_R1.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4191973381 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 bb8ea747-c1e3-4688-951e-2003f19d54ed ff0ba3fa3ac7e8f7d4d74043988036a3 {"aliquot_tag": "ALQ_cc39be1b", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.RNA-Seq.S8_L008_R2.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 4616759031 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 92f50d80-ee03-419b-bb18-47cb4c997113 de1192c95f1df4f098bfc5091a941e87 {"aliquot_tag": "ALQ_cc39be1b", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.RNA-Seq.transcriptome.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.transcriptome.gdc_realn.bam 6886798926 BAM transcriptome harmonized CPTAC3 d7ba9fa7-edf4-4765-ab93-04cb16d38a92 74fe8cb98630e929e78494df1a1777db {"aliquot_tag": "ALQ_d3c6562a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.RNA-Seq.transcriptome.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.transcriptome.gdc_realn.bam 11669083365 BAM transcriptome harmonized CPTAC3 c38af7d9-f51e-4248-81d7-b54e1d6c73e9 ab865476fa3d567bbcd9f13164c0675f {"aliquot_tag": "ALQ_cc39be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.WGS.A C3L-00368 LUAD WGS tissue_normal CPT0063750009 CPT0063750009.WholeGenome.RP-1303.bam 58946484941 BAM submitted_aligned CPTAC3 33927298-2a7f-48cb-a9e9-221a3ae7a983 45ba3cb2c5a9a6513791ba739cc37920 {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.WGS.A.hg38 C3L-00368 LUAD WGS tissue_normal CPT0063750009 eb9967de-974e-4c8b-b16c-4da0dd47f3ed_wgs_gdc_realn.bam 85674261409 BAM harmonized CPTAC3 434dac67-26a6-440c-83ac-a6a706b6c51f 1ae7d3d2d8a2fb2184ec29adc576c1db {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.WGS.N C3L-00368 LUAD WGS blood_normal CPT0065310002 CPT0065310002.WholeGenome.RP-1303.bam 66100290444 BAM submitted_aligned CPTAC3 be3b4e8c-8507-4c15-9e67-2bc6ca0ed2d1 7d5b17e0ce0f377fb72b4fd25ac0d273 {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00368.WGS.N.hg38 C3L-00368 LUAD WGS blood_normal CPT0065310002 d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 99365652695 BAM harmonized CPTAC3 d730cefc-a602-472e-8450-43a4ee8923b3 7cda3b16bb7e94c34c19ed1b681805dd {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00368.WGS.T C3L-00368 LUAD WGS tumor CPT0063730006 CPT0063730006.WholeGenome.RP-1303.bam 80464127238 BAM submitted_aligned CPTAC3 9dcd879a-8005-4da7-8e2b-ee978d0998aa a047186c4bcdb6acdb2a633042d2e7e8 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.WGS.T.hg38 C3L-00368 LUAD WGS tumor CPT0063730006 72483032-4ef4-40ef-b2f9-64a56252e57d_gdc_realn.bam 124826566318 BAM harmonized CPTAC3 52e3f28d-d03b-4a11-bc14-c9b906921610 0e66f822f1975ba89f284125f4b44400 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.WXS.A C3L-00368 LUAD WXS tissue_normal CPT0063750009 CPT0063750009.WholeExome.RP-1303.bam 34789610287 BAM submitted_aligned CPTAC3 bb6d58b3-a38c-4799-b2d5-5641b65616d4 6f806c4c146f41eff15e64c9aaf86679 {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.WXS.A.hg38 C3L-00368 LUAD WXS tissue_normal CPT0063750009 eb9967de-974e-4c8b-b16c-4da0dd47f3ed_wxs_gdc_realn.bam 46333355955 BAM harmonized CPTAC3 e754a0d2-732e-4e28-88f8-6028d778f89c 0b047ea689bde123f431787132f65e2d {"aliquot_tag": "ALQ_43794bbb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00368.WXS.N C3L-00368 LUAD WXS blood_normal CPT0065310002 CPT0065310002.WholeExome.RP-1303.bam 32993909222 BAM submitted_aligned CPTAC3 077d0759-ec93-45bb-aa1b-c1ea9df98089 0fcdafeec8172f9df1e5dc2f703130d8 {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00368.WXS.N.hg38 C3L-00368 LUAD WXS blood_normal CPT0065310002 d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 44407190653 BAM harmonized CPTAC3 cb0fb2a7-2c6b-4855-9a62-9350f0683bb8 7fc5b7ff275304bd11e00ef52290ab37 {"aliquot_tag": "ALQ_d96a43df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00368.WXS.T C3L-00368 LUAD WXS tumor CPT0063730006 CPT0063730006.WholeExome.RP-1303.bam 36689010964 BAM submitted_aligned CPTAC3 b9953f79-b2ba-42d1-84f6-8265ad6b0428 03ee50fd740341d2d0332a4c43f70ab5 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00368.WXS.T.hg38 C3L-00368 LUAD WXS tumor CPT0063730006 72483032-4ef4-40ef-b2f9-64a56252e57d_gdc_realn.bam 51264266651 BAM harmonized CPTAC3 85024923-5694-4461-81a3-100f9a44db27 7a88c058d9a5e90f4a2f541c8392e531 {"aliquot_tag": "ALQ_5c86a38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_28c61080.MethArray.Green.T C3L-00369 CCRCC Methylation_Array tumor CPT0006520009 204372030079_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f7e8073f-4936-42ef-9785-a3c69db7967b 72cffd398664a3e8a93c5c5493ed5bf2 {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_28c61080.MethArray.Red.T C3L-00369 CCRCC Methylation_Array tumor CPT0006520009 204372030079_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 fa97092d-7795-495a-b922-277f11222f01 a6ac2749c26c8275894b794dc482e617 {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_28c61080.WGS.T C3L-00369 CCRCC WGS tumor CPT0006520009 CPT0006520009.WholeGenome.RP-2158.bam 23335263242 BAM submitted_aligned CPTAC3 e4acd0e3-39ab-4d6e-8766-0d49e3c60060 dbcc69a264d008b7b4cfd8993bb423da {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_28c61080.WGS.T.hg38 C3L-00369 CCRCC WGS tumor CPT0006520009 5b2ddfa2-94c5-4401-82cc-0234f40efbd8_wgs_gdc_realn.bam 67911133198 BAM harmonized CPTAC3 998a6f8e-9e7d-4ae6-827a-f03c0e2b22ac 44f2f7a9b4c76ab56fbee8653f2f1fac {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_28c61080.WXS.T C3L-00369 CCRCC WXS tumor CPT0006520009 CPT0006520009.WholeExome.RP-1303.bam 26125950770 BAM submitted_aligned CPTAC3 50d2be36-0819-4205-90a0-c979ece6edc7 a2ade09a0cff9d5a1cf67d1b59b6b9d3 {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_28c61080.WXS.T.hg38 C3L-00369 CCRCC WXS tumor CPT0006520009 5b2ddfa2-94c5-4401-82cc-0234f40efbd8_wxs_gdc_realn.bam 37163130194 BAM harmonized CPTAC3 5f972828-11c0-481f-9bfa-eba23fd59e81 f3837f40b50bfa47f53c6845871f796f {"aliquot_tag": "DUP_28c61080", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_5c7d7cc3.miRNA-Seq.S30_L002_R1.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006470008 200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L002_R1_001.unaln.bam 362120248 BAM S30_L002_R1 submitted_unaligned CPTAC3 cb5085da-d0c5-479f-9a08-7ce9b20811de 067afb3ad069178de41242ef2b293982 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_5c7d7cc3.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006470008 6006cd1b-a544-401d-9e26-53e8883cfd57_mirnaseq_gdc_realn.bam 407563343 BAM harmonized CPTAC3 3f146d2a-25b7-4096-bf90-b4b83a7a6616 8519fab28046a2e977eec769948bd36b {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_5c7d7cc3.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.chimeric.gdc_realn.bam 82082378 BAM chimeric harmonized CPTAC3 4a0c09ed-4921-44f2-82fc-df17cac0a312 548ba24d457dd7281510a5cec7d022f9 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_5c7d7cc3.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.genomic.gdc_realn.bam 8759173161 BAM genomic harmonized CPTAC3 58bbb2e0-ebe8-4cf4-9c1e-f27e6c79777a 5b7915a106578c35ca6c75da71414dbb {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_5c7d7cc3.RNA-Seq.S17_L005_R1.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4333385636 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 0d8beac8-1680-43c5-aa5d-5420c89ba6ac 63228665471662aabac114c10e187bb9 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_5c7d7cc3.RNA-Seq.S17_L005_R2.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 4951122606 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 ca658797-2345-433f-8617-c14524027bba 14ed1ae3c587f6f678e0df6b1756e597 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_5c7d7cc3.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.transcriptome.gdc_realn.bam 11372129895 BAM transcriptome harmonized CPTAC3 006d661e-098c-4fa6-93c0-3cfb012a570c b48a6d002df7d2416e6a3da117364976 {"aliquot_tag": "DUP_5c7d7cc3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_b8790d11.miRNA-Seq.S2_L002_R1.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006520006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L002_R1_001.unaln.bam 315804563 BAM S2_L002_R1 submitted_unaligned CPTAC3 7cc1d94f-2d93-4563-bf32-6b36af1fa5dc b9bd45a0c03d682de9193636c4683152 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_b8790d11.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006520006 525f293d-47c9-4af3-b005-4da102c6d2dc_mirnaseq_gdc_realn.bam 354053785 BAM harmonized CPTAC3 b2398259-0678-4d41-a029-b7bb3bfa56f2 5fc2628ac0f318c04a7959121639aaa0 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_b8790d11.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.chimeric.gdc_realn.bam 73296706 BAM chimeric harmonized CPTAC3 406b33b7-b759-4693-bc13-c2a6d593d9c9 6b4000583afb12ee6978a3d5d7ff871c {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_b8790d11.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.genomic.gdc_realn.bam 9478777306 BAM genomic harmonized CPTAC3 eb2eeff1-7c1d-4cb6-a568-f8db07cc90a4 8d0ae70245f33fc80498986e4458432b {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_b8790d11.RNA-Seq.S21_L006_R1.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R1_001.fastq.gz 4559357071 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 0d4df7a3-0bc0-433a-b512-9693dcca677d e9471aa89498944c7ad52662062a54fb {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_b8790d11.RNA-Seq.S21_L006_R2.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R2_001.fastq.gz 5300994968 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 27a5d8ca-2413-4978-ac91-a446d558c6a5 2e154f68371eba5f05feca9bf23d21e0 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_b8790d11.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.transcriptome.gdc_realn.bam 14282881347 BAM transcriptome harmonized CPTAC3 d1cba7e0-cf47-4a55-a78b-0c556bdb6ea0 1d81d6f276ea7265a8a0b19be8b60a26 {"aliquot_tag": "DUP_b8790d11", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_bbc551c4.MethArray.Green.T C3L-00369 CCRCC Methylation_Array tumor CPT0006470006 204372030161_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 27e06e8e-4c71-4681-a329-88e8305d4c94 a90e8c1535b85e232ee2ac5cb8c1aa2e {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_bbc551c4.MethArray.Red.T C3L-00369 CCRCC Methylation_Array tumor CPT0006470006 204372030161_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 2e740af2-85d3-4aa1-9c41-64c3b4b8a057 0e2e40ce76968db8bc38ac7424d4141c {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_bbc551c4.WGS.T C3L-00369 CCRCC WGS tumor CPT0006470006 CPT0006470006.WholeGenome.RP-2158.bam 37269621161 BAM submitted_aligned CPTAC3 c9f064f3-af1d-47bc-aff6-e1a514e8cbb1 4127d6efe1865415c307826c32332952 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_bbc551c4.WGS.T.hg38 C3L-00369 CCRCC WGS tumor CPT0006470006 1f6d1b3a-55c4-4ddc-87f7-50506630f70b_wgs_gdc_realn.bam 108971086455 BAM harmonized CPTAC3 c9458f24-d83e-4a0d-8d3e-c264ea17f2fc 799a8c1a7972803d0337d6dcb5caf9b3 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_bbc551c4.WXS.T C3L-00369 CCRCC WXS tumor CPT0006470006 CPT0006470006.WholeExome.RP-1303.bam 21679163956 BAM submitted_aligned CPTAC3 2032f147-14db-4e67-9d69-6238e4372c99 fb61b9b6f13137b5fda87f72c1406eb9 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.DUP_bbc551c4.WXS.T.hg38 C3L-00369 CCRCC WXS tumor CPT0006470006 1f6d1b3a-55c4-4ddc-87f7-50506630f70b_wxs_gdc_realn.bam 31152139432 BAM harmonized CPTAC3 7e072ad2-a712-43f6-a8c5-719bb7b211f6 7f1b23621108fe6d76867354e0c29130 {"aliquot_tag": "DUP_bbc551c4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.MethArray.Green.A C3L-00369 CCRCC Methylation_Array tissue_normal CPT0006530014 204930640061_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 22160a33-99e2-4fb6-88b4-a9a84007e8a6 9eb0a556d1f8d1838f1c8a92b3545f61 {"aliquot_tag": "ALQ_720c74cc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.MethArray.Green.T C3L-00369 CCRCC Methylation_Array tumor CPT0006440009 202178770083_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 855b3fba-4d12-4402-bf16-7505e37991b2 b1283c4b83e0325ff4d733e2b01a2d01 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.MethArray.Red.A C3L-00369 CCRCC Methylation_Array tissue_normal CPT0006530014 204930640061_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 6b7c30c6-45a0-4d06-99d5-d031cc7f86e1 dba5fb482285c71153e0b75da1689508 {"aliquot_tag": "ALQ_720c74cc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.MethArray.Red.T C3L-00369 CCRCC Methylation_Array tumor CPT0006440009 202178770083_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 633f73b1-ac4d-4bc8-9e18-3caa9fa66816 05c80ddcc3ba288a273fdb73a7b00b8d {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.miRNA-Seq.A.hg38 C3L-00369 CCRCC miRNA-Seq tissue_normal CPT0006530006 0abf7c29-9417-4a74-8daa-c5f7fed1af2b_mirnaseq_gdc_realn.bam 251273350 BAM harmonized CPTAC3 453ffcf9-df43-45c8-a126-a5ae7cb25bb7 3912b0f3ced7b39c685674af63c9ec2c {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.miRNA-Seq.S12_L005_R1.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006440006 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L005_R1_001.unaln.bam 251099581 BAM S12_L005_R1 submitted_unaligned CPTAC3 c722db17-8629-4a0c-a3b6-225d8f8fc79a dbc67a4b9bdd559c938d3a90e4644b8e {"aliquot_tag": "ALQ_fc652b14", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.miRNA-Seq.S35_L004_R1.A C3L-00369 CCRCC miRNA-Seq tissue_normal CPT0006530006 181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L004_R1_001.unaln.bam 225042975 BAM S35_L004_R1 submitted_unaligned CPTAC3 49bde798-410f-4797-a5d8-45a0a0445f9b 8332e773c692336bdb76a99b6ee50d17 {"aliquot_tag": "ALQ_851924a1", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006440006 61568aa0-efba-4523-87eb-1b62c4de882e_mirnaseq_gdc_realn.bam 279556836 BAM harmonized CPTAC3 7f0c1a0b-1108-433c-8939-f48cdb0a9a46 9d44e675d1c9938646640a05deda39f2 {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.RNA-Seq.chimeric.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.chimeric.gdc_realn.bam 87208501 BAM chimeric harmonized CPTAC3 64a01db0-a325-4562-aa0d-613aff5af7d5 279797b1d93185e40c7080223b52903e {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.chimeric.gdc_realn.bam 83007770 BAM chimeric harmonized CPTAC3 5773d4e1-9a55-40b1-9a9f-71092e73cd7a 3d1c3028e3b84009f62d665718929bad {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.RNA-Seq.genomic.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.genomic.gdc_realn.bam 9141677465 BAM genomic harmonized CPTAC3 bead6e04-d70c-4590-b80c-57c3fc123704 88f15e7dd76a65759ce4b27ce5e39708 {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.genomic.gdc_realn.bam 8930209326 BAM genomic harmonized CPTAC3 58e37c20-2e25-4d3d-a1e3-06b59707fa6d 9fd3f2f19063a95e7e1a1ea3fce0564f {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.RNA-Seq.S15_L004_R1.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R1_001.fastq.gz 4385949568 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 ee01ad02-6971-4ec8-acd6-dd2c4b58b90e a107b01c30a2d6d45bda17df1faa5264 {"aliquot_tag": "ALQ_fc652b14", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.RNA-Seq.S15_L004_R2.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R2_001.fastq.gz 4589565712 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 21c6bcae-8c89-403c-942e-e017be8fcb22 b0c7fd309ab57f07800aa87151b1fd88 {"aliquot_tag": "ALQ_fc652b14", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.RNA-Seq.S46_L005_R1.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R1_001.fastq.gz 4378813042 FASTQ S46_L005_R1 submitted_unaligned CPTAC3 b4164ae8-fc6e-483a-962e-d069d7b7a6fa 8bbb53fd2b9445beff0b3e611daeda0d {"aliquot_tag": "ALQ_851924a1", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.RNA-Seq.S46_L005_R2.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R2_001.fastq.gz 4912455712 FASTQ S46_L005_R2 submitted_unaligned CPTAC3 88a62ef5-b642-4fbf-a2b5-06b61fb3e50a 2d206a373543db81f057b3e0321c8820 {"aliquot_tag": "ALQ_851924a1", "sample": "S46", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.RNA-Seq.transcriptome.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.transcriptome.gdc_realn.bam 11631459383 BAM transcriptome harmonized CPTAC3 d77cedfa-becc-4962-8ae1-a3602ce843f9 d16144e62332fed1ec781941d60f8054 {"aliquot_tag": "ALQ_851924a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.transcriptome.gdc_realn.bam 13529570135 BAM transcriptome harmonized CPTAC3 4eddd9e9-0f69-4baf-909a-3e55daf9faa0 ad1d7442e074910530972557f776dad6 {"aliquot_tag": "ALQ_fc652b14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.WGS.A C3L-00369 CCRCC WGS tissue_normal CPT0006530009 CPT0006530009.WholeGenome.RP-1303.bam 53812280342 BAM submitted_aligned CPTAC3 1897be88-4247-4f91-b7fc-d8d131a05162 f03f132600ff37aa1938eb4a413a2ad2 {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.WGS.A.hg38 C3L-00369 CCRCC WGS tissue_normal CPT0006530009 b757f6ca-1d53-48a2-bed1-a00e289f178d_wgs_gdc_realn.bam 78610257604 BAM harmonized CPTAC3 7b19fbaa-991a-4669-85e1-35478e64bf8b 4d6a2e14859f8d3f5f1d972d539701d0 {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.WGS.N C3L-00369 CCRCC WGS blood_normal CPT0002660002 CPT0002660002.WholeGenome.RP-1303.bam 66332014343 BAM submitted_aligned CPTAC3 fc5a5e9b-4dc3-490e-b35e-28e153a07361 7df8e46aa096e399bd4706fe5160e197 {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00369.WGS.N.hg38 C3L-00369 CCRCC WGS blood_normal CPT0002660002 e01d567c-94df-4606-95ff-13d11ca6d24d_gdc_realn.bam 97640529606 BAM harmonized CPTAC3 165da5ac-80f2-43c8-b596-21756c9000bd bfd4df10b86dc89f2985bab0bf70d7a5 {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00369.WGS.T C3L-00369 CCRCC WGS tumor CPT0006440009 CPT0006440009.WholeGenome.RP-1303.bam 59669223587 BAM submitted_aligned CPTAC3 f5dd9923-ffba-46b7-98cc-06b9716b5fdb b3aab1e1f6d98e24cd236408ac1b8556 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.WGS.T.hg38 C3L-00369 CCRCC WGS tumor CPT0006440009 c71f1be9-860c-4cb3-9215-a1a8e78355da_gdc_realn.bam 87033912220 BAM harmonized CPTAC3 de900400-d353-43ae-97c7-cbc296a6305a d737c4bf7567ecc3e17c4a645bb6500a {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.WXS.A C3L-00369 CCRCC WXS tissue_normal CPT0006530009 CPT0006530009.WholeExome.RP-1303.bam 45017738850 BAM submitted_aligned CPTAC3 f0968da9-35f1-4522-b291-56cda8c88b4f b99f032c1de989501b56f6f76781b607 {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.WXS.A.hg38 C3L-00369 CCRCC WXS tissue_normal CPT0006530009 b757f6ca-1d53-48a2-bed1-a00e289f178d_wxs_gdc_realn.bam 61241036030 BAM harmonized CPTAC3 c87b2dc4-2784-4a10-a51b-0899c45065d4 d248dfc8e437a98efe06e22be160f0bb {"aliquot_tag": "ALQ_15a63930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00369.WXS.N C3L-00369 CCRCC WXS blood_normal CPT0002660002 CPT0002660002.WholeExome.RP-1303.bam 26355620686 BAM submitted_aligned CPTAC3 223db7e4-9112-4d30-b77d-8ba2dff20231 2b8668d675278c7daaccf4269379d69f {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00369.WXS.N.hg38 C3L-00369 CCRCC WXS blood_normal CPT0002660002 e01d567c-94df-4606-95ff-13d11ca6d24d_gdc_realn.bam 36084206720 BAM harmonized CPTAC3 b23cc7c4-8879-4c59-9e9c-f8d52cf780a9 d6e36ad62b7038c033146a34649a9c06 {"aliquot_tag": "ALQ_384f3975", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00369.WXS.T C3L-00369 CCRCC WXS tumor CPT0006440009 CPT0006440009.WholeExome.RP-1303.bam 53308474586 BAM submitted_aligned CPTAC3 9d1618a7-c76f-4c28-b6d8-1c23384620af 2ff3baa26a3fece4fefda27562d79ab3 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00369.WXS.T.hg38 C3L-00369 CCRCC WXS tumor CPT0006440009 c71f1be9-860c-4cb3-9215-a1a8e78355da_gdc_realn.bam 73052393176 BAM harmonized CPTAC3 da894189-0a3e-4a36-8468-19941f32136a f0d1c7a5c2ff2055c36142e1eddb9d59 {"aliquot_tag": "ALQ_6cda3685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00395.MethArray.Green.T C3L-00395 PDA Methylation_Array tumor CPT0010020010 202176290095_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dad59a32-aebc-483b-bc24-7fc39ab108b6 c26b1edba06e52259e5dd9d8fd74dc47 {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.MethArray.Red.T C3L-00395 PDA Methylation_Array tumor CPT0010020010 202176290095_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3ad2b571-3dbd-4245-a2fa-d6becbb75b0f 07f54f59e6b317a51a7b6191b10834b2 {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.miRNA-Seq.A.hg38 C3L-00395 PDA miRNA-Seq tissue_normal CPT0019230006 ba9dcc2f-fdb1-476c-858c-b4b7c2efc1a3_mirnaseq_gdc_realn.bam 169090918 BAM harmonized CPTAC3 572d478f-cfbf-499d-9a22-a6731d54706c 113279af98b38e768551de2f04eeff1d {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00395.miRNA-Seq.S22_L004_R1.T C3L-00395 PDA miRNA-Seq tumor CPT0010020007 181012_UNC32-K00270_0124_AH223CBBXY_ATCACG_S22_L004_R1_001.unaln.bam 256935267 BAM S22_L004_R1 submitted_unaligned CPTAC3 c1f2cfc7-c79b-4e50-8a90-73c80e85d1cd 3f79a4136d45f5ca4fbce513edaed736 {"aliquot_tag": "ALQ_30c99990", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.miRNA-Seq.S48_L002_R1.A C3L-00395 PDA miRNA-Seq tissue_normal CPT0019230006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 151629135 BAM S48_L002_R1 submitted_unaligned CPTAC3 eef84af0-a30b-4712-874a-799c08eae7f0 f9356e29176f72cd9b584c5d3530ea54 {"aliquot_tag": "ALQ_a2fe646e", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00395.miRNA-Seq.T.hg38 C3L-00395 PDA miRNA-Seq tumor CPT0010020007 94654452-5c3a-461c-b21d-5fd3a9507db5_mirnaseq_gdc_realn.bam 292282611 BAM harmonized CPTAC3 efe7344b-c458-4e01-895c-98dae9b97004 891b80041c738ce9d0eee1484704d8e3 {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.RNA-Seq.chimeric.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.chimeric.gdc_realn.bam 143632907 BAM chimeric harmonized CPTAC3 bf320102-13e5-4c03-9880-a80741169cf0 a54907a7cd7240bc1ca9e4e5e6aebcce {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00395.RNA-Seq.chimeric.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.chimeric.gdc_realn.bam 108697458 BAM chimeric harmonized CPTAC3 79286d24-2db3-4187-a49a-7d19180ae31b cb7e9fd5a53523df66b095cf45fb8f01 {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.RNA-Seq.genomic.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.genomic.gdc_realn.bam 9148775730 BAM genomic harmonized CPTAC3 598c4675-b578-4a30-ac4d-2998eb2deee3 d34be33fb2518362aef3229cf59cc50a {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00395.RNA-Seq.genomic.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.genomic.gdc_realn.bam 9061163097 BAM genomic harmonized CPTAC3 a394c60a-d6d9-4b36-adf8-6d5691800b97 f5f414ea994813f6b4d741318aa20d1e {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.RNA-Seq.S18_L005_R1.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4821204983 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 ad5886c9-bb87-453c-bf23-854d27a5db90 ce3cc1e66f548312042dd66eaa7f199c {"aliquot_tag": "ALQ_30c99990", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.RNA-Seq.S18_L005_R2.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 5136961470 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 d43755e1-f5c2-4d7c-acd5-c860b264a4a2 231b46cc721c716dbd16ea9ab4320e3a {"aliquot_tag": "ALQ_30c99990", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.RNA-Seq.S58_L007_R1.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R1_001.fastq.gz 4051028052 FASTQ S58_L007_R1 submitted_unaligned CPTAC3 60af23f1-4a28-4fbe-a9da-547a52f9ae40 65be6133f09f239c920dc47135fc8e09 {"aliquot_tag": "ALQ_a2fe646e", "sample": "S58", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00395.RNA-Seq.S58_L007_R2.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R2_001.fastq.gz 4304355992 FASTQ S58_L007_R2 submitted_unaligned CPTAC3 b61189fc-f6bf-4922-bbab-20cbc75ddcbe 95e86e73a1901ca19531d55eef87f457 {"aliquot_tag": "ALQ_a2fe646e", "sample": "S58", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00395.RNA-Seq.transcriptome.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.transcriptome.gdc_realn.bam 11989906168 BAM transcriptome harmonized CPTAC3 31f0a9de-98d4-418a-af13-807e9b3c0967 ebe3cd80a8046fdcf0758982e5978988 {"aliquot_tag": "ALQ_a2fe646e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00395.RNA-Seq.transcriptome.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.transcriptome.gdc_realn.bam 13680904031 BAM transcriptome harmonized CPTAC3 90f593d6-bc7f-43c2-9bba-628636509d21 6a603a92519462f4df0650753522a39b {"aliquot_tag": "ALQ_30c99990", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.Targeted.T C3L-00395 PDA Targeted_Sequencing tumor CPT0010020010_1 CPT0010020010_1.CustomSelection.RP-1303.PDO-18786.bam 5203736509 BAM submitted_aligned CPTAC3 8856957a-cc82-49cb-9f53-9802d4e84818 14fe7961f1781df1d449f151d38801a0 {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.Targeted.T.hg38 C3L-00395 PDA Targeted_Sequencing tumor CPT0010020010_1 4b9596de-e4e8-4623-a83c-fa87759929d3_targetedsequencing_gdc_realn.bam 7255399917 BAM harmonized CPTAC3 d568922c-87b3-48dd-b38a-52a22d2c0ae8 7e478aba9e0c2c56a37fddac651f199b {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.WGS.N C3L-00395 PDA WGS blood_normal CPT0019280002 CPT0019280002.WholeGenome.RP-1303.bam 63333471823 BAM submitted_aligned CPTAC3 f22e6234-f0cd-44d9-b25e-7c9eba750448 5ab09ecc18e2e61880e71abebcaf8c0d {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00395.WGS.N.hg38 C3L-00395 PDA WGS blood_normal CPT0019280002 93b22d31-3cd3-4c13-bc7c-e52fe3a9d69f_gdc_realn.bam 94645348065 BAM harmonized CPTAC3 de7e53d9-cd5d-4a67-8a06-a83f39c52c70 239a615db091b9550f7d5fa3cd33c794 {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00395.WGS.T C3L-00395 PDA WGS tumor CPT0010020010 CPT0010020010.WholeGenome.RP-1303.bam 75135915006 BAM submitted_aligned CPTAC3 ceb738a4-b53e-4c1b-b4a2-26199337b60c 4befb1fd0f8dd43a02c6e37b767d22db {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.WGS.T.hg38 C3L-00395 PDA WGS tumor CPT0010020010 e6e523ac-1f81-4b60-bc4b-240d04fa2753_gdc_realn.bam 112256500404 BAM harmonized CPTAC3 fd960885-defd-4423-be11-9749d4f967fd 4b995aca1d111635c08a0db737cd6a3b {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.WXS.N C3L-00395 PDA WXS blood_normal CPT0019280002 CPT0019280002.WholeExome.RP-1303.bam 35532325280 BAM submitted_aligned CPTAC3 a9ef0559-6ed2-4d14-8488-d647ae32acd0 06794e1c4e1ca3506f53456fbb415e10 {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00395.WXS.N.hg38 C3L-00395 PDA WXS blood_normal CPT0019280002 93b22d31-3cd3-4c13-bc7c-e52fe3a9d69f_gdc_realn.bam 48728279573 BAM harmonized CPTAC3 aa7d45c9-329b-4891-8f8e-e1fce2b9bda5 88421996fdfc32717cb81822a97443a6 {"aliquot_tag": "ALQ_d2439166", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00395.WXS.T C3L-00395 PDA WXS tumor CPT0010020010_1 CPT0010020010_1.WholeExome.RP-1303.bam 57701385428 BAM submitted_aligned CPTAC3 c4753e97-7224-4d8b-8a9c-a19fcbd41b4b 37869e728c4e744d8f1774f1a456d74b {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.WXS.T C3L-00395 PDA WXS tumor CPT0010020010 CPT0010020010.WholeExome.RP-1303.bam 29199029063 BAM submitted_aligned CPTAC3 85ff3ecf-0a1b-491e-bfdf-11af2be2a9ea 3a13980886848413d37836aea3723f9f {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.WXS.T.hg38 C3L-00395 PDA WXS tumor CPT0010020010_1 4b9596de-e4e8-4623-a83c-fa87759929d3_wxs_gdc_realn.bam 78373781948 BAM harmonized CPTAC3 348402ae-edf8-4c5e-9e00-a9d8f3f9c751 192e8253fc321a175081298a7a2a5f9c {"aliquot_tag": "ALQ_6845b38d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00395.WXS.T.hg38 C3L-00395 PDA WXS tumor CPT0010020010 e6e523ac-1f81-4b60-bc4b-240d04fa2753_gdc_realn.bam 39814400832 BAM harmonized CPTAC3 f0d9cb1a-46f2-4b05-9917-abd752c8162b 4ecf62e3a7c628622eb47a1eca50022e {"aliquot_tag": "ALQ_b7b63d72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00401.MethArray.Green.T C3L-00401 PDA Methylation_Array tumor CPT0019300010 202176290046_R01C01_Grn.idat 13676215 IDAT Green NA CPTAC3 6105a4b4-a111-49cd-bdb2-dff96ff0bb54 eae36805fe97e07d192d99ad92ce0919 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.MethArray.Red.T C3L-00401 PDA Methylation_Array tumor CPT0019300010 202176290046_R01C01_Red.idat 13676215 IDAT Red NA CPTAC3 bae536dc-320c-44fb-ae20-8b51aedd0800 a67e8a5caf20586acd884e5517174db4 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.miRNA-Seq.S27_L004_R1.T C3L-00401 PDA miRNA-Seq tumor CPT0019300007 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L004_R1_001.unaln.bam 251182047 BAM S27_L004_R1 submitted_unaligned CPTAC3 b4717929-7e6d-4b4b-acc5-868415eb743c 2d28403f24c5fdd80444c42fc5a71f93 {"aliquot_tag": "ALQ_5905fd8d", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.miRNA-Seq.T.hg38 C3L-00401 PDA miRNA-Seq tumor CPT0019300007 1f5cd054-cbfa-431d-b707-c5b85c43b3ba_mirnaseq_gdc_realn.bam 276651158 BAM harmonized CPTAC3 87a834d0-99fe-4e42-8068-87c172a69968 d6985dfd482209937fae9a3bba9d386c {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.RNA-Seq.chimeric.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.chimeric.gdc_realn.bam 73491888 BAM chimeric harmonized CPTAC3 65cc94c0-a3f2-4999-b436-4f8814c7e740 29fcf2c86997c63ca32ecc9052e5e63a {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.RNA-Seq.genomic.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.genomic.gdc_realn.bam 6659507845 BAM genomic harmonized CPTAC3 eded2a3f-f0c8-42b8-9570-fc901b05d5d9 f57cc9b4bf8dcedcf4fcf48705f25338 {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.RNA-Seq.S17_L005_R1.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3189467493 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 64ca103c-f18f-44de-b8b1-123784233175 10adbfc1871badc04af9bba5add83438 {"aliquot_tag": "ALQ_5905fd8d", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.RNA-Seq.S17_L005_R2.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 3457497108 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 65b84802-756a-4188-8cee-262aac9e0685 c51f136a249f42b92cbd06c103986cb4 {"aliquot_tag": "ALQ_5905fd8d", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.RNA-Seq.transcriptome.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.transcriptome.gdc_realn.bam 9884280601 BAM transcriptome harmonized CPTAC3 18dc05c1-f25b-462f-8a33-514fa0458d1b 8219b48df175dc4b81a6bdc2f4e8ea51 {"aliquot_tag": "ALQ_5905fd8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.Targeted.T C3L-00401 PDA Targeted_Sequencing tumor CPT0019300010_1 CPT0019300010_1.CustomSelection.RP-1303.PDO-18786.bam 4033825505 BAM submitted_aligned CPTAC3 d71359fd-38e4-406f-aac4-4bb5d3ac5a8f 6b80ae1948f012fbc305f2f1a8b28ce2 {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.Targeted.T.hg38 C3L-00401 PDA Targeted_Sequencing tumor CPT0019300010_1 53031bb7-6216-4ea9-a7fd-86390fb1af88_targetedsequencing_gdc_realn.bam 5723151036 BAM harmonized CPTAC3 2472e2ee-f790-4f1c-a6fa-8a042c427208 a7d2dd5ce1659f341ea892ef770bd87e {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.WGS.N C3L-00401 PDA WGS blood_normal CPT0019380002 CPT0019380002.WholeGenome.RP-1303.bam 73376627678 BAM submitted_aligned CPTAC3 32355b44-6547-41bd-9a82-79e2fd7e2a08 f531463599548c497880e11cfcf08a54 {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00401.WGS.N.hg38 C3L-00401 PDA WGS blood_normal CPT0019380002 7d0ae575-2879-49bf-9b84-f049c7ea5f94_gdc_realn.bam 107918438859 BAM harmonized CPTAC3 313cdfd5-f6c7-4ee9-82b6-d7adad543708 06bb26d490b5d2e8bed5375341be022a {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00401.WGS.T C3L-00401 PDA WGS tumor CPT0019300010 CPT0019300010.WholeGenome.RP-1303.bam 70296074020 BAM submitted_aligned CPTAC3 6864f796-2fd8-43af-9efa-10d455ddfd9e 654dc87e96e1ba0fed3cf51594ba80a0 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.WGS.T.hg38 C3L-00401 PDA WGS tumor CPT0019300010 3656044a-0cdc-4745-8b5b-e7e2f65387a4_gdc_realn.bam 104830319242 BAM harmonized CPTAC3 e61e68e7-0d31-4376-af87-872ec005c6a6 6ee18c6b69f0e178c0860fe7b9be19f5 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.WXS.N C3L-00401 PDA WXS blood_normal CPT0019380002 CPT0019380002.WholeExome.RP-1303.bam 30823286444 BAM submitted_aligned CPTAC3 15ad03f5-e2f8-4309-8790-fdbed852279a 262aeb70b31d2057ef0bcc9350c2aef9 {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00401.WXS.N.hg38 C3L-00401 PDA WXS blood_normal CPT0019380002 7d0ae575-2879-49bf-9b84-f049c7ea5f94_gdc_realn.bam 42369388874 BAM harmonized CPTAC3 c465d059-cd64-4aa1-8446-3289da046032 d8096941bf2f162a4c6ae6ad3c1f9de3 {"aliquot_tag": "ALQ_191f42c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00401.WXS.T C3L-00401 PDA WXS tumor CPT0019300010_1 CPT0019300010_1.WholeExome.RP-1303.bam 82311480671 BAM submitted_aligned CPTAC3 13597774-6e3e-464c-b834-c543afc73d81 bdd3f010c632468a07f0f1610578dfcb {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.WXS.T C3L-00401 PDA WXS tumor CPT0019300010 CPT0019300010.WholeExome.RP-1303.bam 55762692551 BAM submitted_aligned CPTAC3 dacac610-800d-4c4f-8b65-2dfd0c7ccbbf 874bfe7215acbcc47c92e309c1b35584 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.WXS.T.hg38 C3L-00401 PDA WXS tumor CPT0019300010_1 53031bb7-6216-4ea9-a7fd-86390fb1af88_wxs_gdc_realn.bam 112778121060 BAM harmonized CPTAC3 9fd1fb54-1e8c-4f0f-93cf-db2c72a20ec1 a7824b3ba207e224cc442408fee04fa0 {"aliquot_tag": "ALQ_ddf6131c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00401.WXS.T.hg38 C3L-00401 PDA WXS tumor CPT0019300010 3656044a-0cdc-4745-8b5b-e7e2f65387a4_gdc_realn.bam 77006977130 BAM harmonized CPTAC3 cc0c9dac-72a5-4219-87bb-db8bbcba19b7 6f82817b778f9aea715ccbd7a8856769 {"aliquot_tag": "ALQ_de7a596f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.ADD_a922a197.miRNA-Seq.S41_L005_R1.T C3L-00412 LUAD miRNA-Seq tumor CPT0023310009 181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L005_R1_001.unaln.bam 168290432 BAM S41_L005_R1 submitted_unaligned CPTAC3 a8c5512f-637b-4fb8-8bb7-8ea4bd2b73dd b13c22cda213191b56251aa340ac5ba3 {"aliquot_tag": "ADD_a922a197", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.ADD_a922a197.miRNA-Seq.T.hg38 C3L-00412 LUAD miRNA-Seq tumor CPT0023310009 b6613d1e-1322-4a1c-a67e-5c9eb8d025e6_mirnaseq_gdc_realn.bam 188286665 BAM harmonized CPTAC3 8a00598b-3751-4b47-abbd-702bb7c36c13 08500db6876506c11422e00c3995468b {"aliquot_tag": "ADD_a922a197", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.MethArray.Green.A C3L-00412 LUAD Methylation_Array tissue_normal CPT0023320009 203028200093_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 255ff5f9-0e34-49c5-993f-60f52be885f5 0d97e5bf69464afebb3e276a8b358478 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.MethArray.Green.T C3L-00412 LUAD Methylation_Array tumor CPT0023310006 202176290087_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d34439f5-6796-4054-b19a-0179ad4c74a1 984a5931e319a4f71fafe6e4eda9a1ef {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.MethArray.Red.A C3L-00412 LUAD Methylation_Array tissue_normal CPT0023320009 203028200093_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f6726fe0-f7ae-4aa6-8b7d-7d70a54128f6 66983ccd2503a0f6c31e020fafec1675 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.MethArray.Red.T C3L-00412 LUAD Methylation_Array tumor CPT0023310006 202176290087_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 a1dbac11-c6c8-486a-8953-c5daa0b62b9d 60e71e6d0dd9690188ec6f216e34af31 {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.miRNA-Seq.A.hg38 C3L-00412 LUAD miRNA-Seq tissue_normal CPT0023320006 70098b82-d1c1-4d35-b466-cc950280cf8c_mirnaseq_gdc_realn.bam 224130132 BAM harmonized CPTAC3 68645745-d20f-4983-b31a-520b29f74d49 d40746da015ec06b0ad086e1e048c6aa {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.miRNA-Seq.S35_L002_R1.A C3L-00412 LUAD miRNA-Seq tissue_normal CPT0023320006 181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L002_R1_001.unaln.bam 198746146 BAM S35_L002_R1 submitted_unaligned CPTAC3 ac2678f3-1e47-46c8-88f6-c9f8bff35e31 84051983a708c0cf997f2fb8592a9eb8 {"aliquot_tag": "ALQ_7e3dc6d6", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.RNA-Seq.chimeric.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.chimeric.gdc_realn.bam 34048652 BAM chimeric harmonized CPTAC3 e30159c8-dc15-49a8-ad3c-ad7a58c4772b 7a25796947971e98b00bb0cabdbbf786 {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.RNA-Seq.chimeric.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.chimeric.gdc_realn.bam 74415639 BAM chimeric harmonized CPTAC3 1f3d1efa-bb27-4221-935b-aa235eb083a4 238ff15381be787dfe84866453bca078 {"aliquot_tag": "ALQ_50ec79c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.RNA-Seq.genomic.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.genomic.gdc_realn.bam 6069837862 BAM genomic harmonized CPTAC3 13691e74-e95b-43f0-9a95-9704f21f0163 58e1fb744db99d1c3f5f9c9857105749 {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.RNA-Seq.genomic.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.genomic.gdc_realn.bam 11536304849 BAM genomic harmonized CPTAC3 a2053cb6-0649-44b8-ab7c-c6abc798bf4f 6c7dc14d5cb1ca14e170938b1815f37c {"aliquot_tag": "ALQ_50ec79c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.RNA-Seq.S12_L004_R1.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R1_001.fastq.gz 4738712256 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 b950f8d9-f501-4715-86b8-1eafd595e548 18072ca6685be2b85dea21871794ace1 {"aliquot_tag": "ALQ_50ec79c8", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.RNA-Seq.S12_L004_R2.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R2_001.fastq.gz 5066567221 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 0e36cba6-2ded-4e79-a7ec-10ad7c1904f7 2897e6c316ed07ebcce8ac9c56dbe9f3 {"aliquot_tag": "ALQ_50ec79c8", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.RNA-Seq.S4_L007_R1.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R1_001.fastq.gz 2707979121 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 7a8c5c0f-4635-499c-a8cf-a2ecd6bfc5a9 3e0e963fd07a56f152a1c516ffc5f68b {"aliquot_tag": "ALQ_7e3dc6d6", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.RNA-Seq.S4_L007_R2.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R2_001.fastq.gz 3043817258 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 16d35297-a6f6-4651-b0b2-fad1ca63e804 0c73625e1ddff7b92e34ffe9679f0b62 {"aliquot_tag": "ALQ_7e3dc6d6", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.RNA-Seq.transcriptome.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.transcriptome.gdc_realn.bam 6720907953 BAM transcriptome harmonized CPTAC3 7c2c257c-cd1f-4891-9d1b-25c5e3e2da03 26051fbaf503a284a7f9f054af8ce683 {"aliquot_tag": "ALQ_7e3dc6d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.RNA-Seq.transcriptome.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.transcriptome.gdc_realn.bam 10490668218 BAM transcriptome harmonized CPTAC3 c4caf75b-d199-4050-a29d-d03d09b37b7c e27087db0f34d6b7afa6100091a5d3b8 {"aliquot_tag": "ALQ_50ec79c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.WGS.A C3L-00412 LUAD WGS tissue_normal CPT0023320009 CPT0023320009.WholeGenome.RP-1303.bam 60587993939 BAM submitted_aligned CPTAC3 6ffb1fc9-a512-40a9-b369-3f2e4f4dc4a5 d8695569b445735c60a7c37833a4ed2a {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.WGS.A.hg38 C3L-00412 LUAD WGS tissue_normal CPT0023320009 276865e9-3b98-4544-bc48-f3dba290537c_wgs_gdc_realn.bam 87470066194 BAM harmonized CPTAC3 ce8cadb7-753a-4d6c-95bf-0351c4cc5d54 e7ceef14cdfa85dbe89dc9f4a8ef8c98 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.WGS.N C3L-00412 LUAD WGS blood_normal CPT0024540002 CPT0024540002.WholeGenome.RP-1303.bam 70367211112 BAM submitted_aligned CPTAC3 428a6de4-444d-4637-86f8-5f0f4b57d3da d0f10fe284ac992593022d0a776e6ea4 {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00412.WGS.N.hg38 C3L-00412 LUAD WGS blood_normal CPT0024540002 93d63368-79fa-42d3-88df-cf070ac6460d_gdc_realn.bam 101875310751 BAM harmonized CPTAC3 a7fa51d9-6b5a-4674-9cff-60771fba8ce7 7ee3a2c79390ad9171203e726f25e5d4 {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00412.WGS.T C3L-00412 LUAD WGS tumor CPT0023310006 CPT0023310006.WholeGenome.RP-1303.bam 65303200246 BAM submitted_aligned CPTAC3 a4163f48-1d66-438f-8d51-0f417959d76d 7a8d5bb68002eb600333e16939c3a343 {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.WGS.T.hg38 C3L-00412 LUAD WGS tumor CPT0023310006 9cc4a810-0c4e-4b3e-a95c-bc041d77d81d_gdc_realn.bam 94600529937 BAM harmonized CPTAC3 f6057d4a-f89b-4a98-9ba2-b0eb23bc374d f0165bf5225f6ac60bc9209f2a482ebc {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.WXS.A C3L-00412 LUAD WXS tissue_normal CPT0023320009 CPT0023320009.WholeExome.RP-1303.bam 29984312788 BAM submitted_aligned CPTAC3 4cba5640-c791-4f85-980e-6444f54b0617 fbc86ae3f7400283b142ff411f392406 {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.WXS.A.hg38 C3L-00412 LUAD WXS tissue_normal CPT0023320009 276865e9-3b98-4544-bc48-f3dba290537c_wxs_gdc_realn.bam 40661049193 BAM harmonized CPTAC3 f7962626-53e9-42fa-b713-16f5ff08febe b9f14874c07b711966ae0917880b2cdf {"aliquot_tag": "ALQ_ee82db47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00412.WXS.N C3L-00412 LUAD WXS blood_normal CPT0024540002 CPT0024540002.WholeExome.RP-1303.bam 30250965669 BAM submitted_aligned CPTAC3 e26bfa84-a16a-480a-961c-4e88430bbe4b d33702b1260f8ce114d9ede2defd4b44 {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00412.WXS.N.hg38 C3L-00412 LUAD WXS blood_normal CPT0024540002 93d63368-79fa-42d3-88df-cf070ac6460d_gdc_realn.bam 41445003359 BAM harmonized CPTAC3 a03ee68b-c664-4f01-b336-068608fc760a 20c439a86df039cd97de814e14f6f9ec {"aliquot_tag": "ALQ_e5ee2afc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00412.WXS.T C3L-00412 LUAD WXS tumor CPT0023310006 CPT0023310006.WholeExome.RP-1303.bam 27174693245 BAM submitted_aligned CPTAC3 3ef204f0-d61b-4efb-9535-1df7ac65551d c301901caa31ec841112b8b8dd560cc0 {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00412.WXS.T.hg38 C3L-00412 LUAD WXS tumor CPT0023310006 9cc4a810-0c4e-4b3e-a95c-bc041d77d81d_gdc_realn.bam 37418463633 BAM harmonized CPTAC3 f725603f-013e-49ec-821e-bf3e38858aa2 34b2a7942030fa9c13c1f794894b4b6d {"aliquot_tag": "ALQ_399dbc06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.MethArray.Green.T C3L-00413 UCEC Methylation_Array tumor CPT0009980006 202178770006_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 503585b1-fd8e-4f8d-b453-976197936402 ebaa6642b761e2c4b1a77417927cef11 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.MethArray.Red.T C3L-00413 UCEC Methylation_Array tumor CPT0009980006 202178770006_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 e76175f9-bc4e-444d-97d5-a42fb29d762b 5d17a762863fe9cd8683b42b9628e85b {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.miRNA-Seq.S17_L003_R1.T C3L-00413 UCEC miRNA-Seq tumor CPT0009980009 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L003_R1_001.unaln.bam 251069247 BAM S17_L003_R1 submitted_unaligned CPTAC3 7a303066-7bd3-4824-923d-f4506de6f969 ccf0c0e4902104a1b32f578619783acf {"aliquot_tag": "ALQ_e3fcb8b3", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.miRNA-Seq.T.hg38 C3L-00413 UCEC miRNA-Seq tumor CPT0009980009 db2cda3a-7b8d-491a-b908-1a37bd9590a9_mirnaseq_gdc_realn.bam 273180278 BAM harmonized CPTAC3 067a65f4-8f74-4a74-875a-d43bbbea1dcc 2d1e1986fe05b69b0729e772072b1335 {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.chimeric.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.chimeric.gdc_realn.bam 154588183 BAM chimeric harmonized CPTAC3 b841f579-7837-4882-9d87-d5f30664c063 e35ca2cdd5c1c531151651c183a9ae58 {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.chimeric.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.chimeric.gdc_realn.bam 110013338 BAM chimeric harmonized CPTAC3 da4eb599-553c-46f5-8774-c10e66949cd2 e66ce6cf1c4f94c6560cad1c9fd3e13b {"aliquot_tag": "ALQ_592674da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.genomic.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.genomic.gdc_realn.bam 9222740317 BAM genomic harmonized CPTAC3 e8811547-39e4-4ca2-a9f8-35ebdd95091e c6de244a27448c7d06bebae77d671abe {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.genomic.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.genomic.gdc_realn.bam 7841772084 BAM genomic harmonized CPTAC3 1865e331-f1ac-45ae-b0d7-8703cdd66009 93fa34a7b1e69a68f2e24daa206d8c53 {"aliquot_tag": "ALQ_592674da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.S1_L006_R1.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R1_001.fastq.gz 4560838380 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 e46aae2a-0162-443c-9f2d-7f95cd2f132e 2bd22863df9cc960c017db0b9373d562 {"aliquot_tag": "ALQ_e3fcb8b3", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.S1_L006_R2.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R2_001.fastq.gz 4758626872 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 05b8da1e-d495-4023-9aca-b71417350ee1 03112225a37f051ba49f3b11df819282 {"aliquot_tag": "ALQ_e3fcb8b3", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.S50_R1.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R1_001.fastq.gz 4600956944 FASTQ S50_R1 submitted_unaligned CPTAC3 b1d02ba1-b318-4e37-afd5-0f71255be116 0824a04b3574d7ccb735dcbd688aad7a {"aliquot_tag": "ALQ_592674da", "sample": "S50", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.S50_R2.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R2_001.fastq.gz 4698611451 FASTQ S50_R2 submitted_unaligned CPTAC3 25a81b26-0732-4579-b846-46aa6439dcbd 79403ef590fbdec5559912b6fdb03d32 {"aliquot_tag": "ALQ_592674da", "sample": "S50", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.transcriptome.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.transcriptome.gdc_realn.bam 12036275147 BAM transcriptome harmonized CPTAC3 a2368177-78f5-4957-945e-e7b901cb17d3 5f0b8312bd8828849f5558e373120775 {"aliquot_tag": "ALQ_e3fcb8b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.RNA-Seq.transcriptome.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.transcriptome.gdc_realn.bam 4727373058 BAM transcriptome harmonized CPTAC3 afd60849-9ab4-4523-898a-f110d7c29cee b068a3de0f389cc68d30105fd3edbb6a {"aliquot_tag": "ALQ_592674da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.WGS.N C3L-00413 UCEC WGS blood_normal CPT0019850002 CPT0019850002.WholeGenome.RP-1303.bam 70009069294 BAM submitted_aligned CPTAC3 da80dcfd-41b5-4dc9-9c39-0e8c55ce7f7c ae16b8cad65b87212e0c7b7acb99bfd2 {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00413.WGS.N.hg38 C3L-00413 UCEC WGS blood_normal CPT0019850002 92bebf14-5fd0-453e-99a3-c7041b9cde22_gdc_realn.bam 100033312069 BAM harmonized CPTAC3 22c5648f-e238-4e98-b2d5-32d41ab94314 cd9d46c8e526305379aaf42a0b219bc0 {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00413.WGS.T C3L-00413 UCEC WGS tumor CPT0009980006 CPT0009980006.WholeGenome.RP-1303.bam 57534242825 BAM submitted_aligned CPTAC3 514c9e6e-510d-4f2e-871d-8876b8a91c4e b34cbf546578eb4fec9f960a5180ec08 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.WGS.T.hg38 C3L-00413 UCEC WGS tumor CPT0009980006 ef798c59-f595-45b8-960e-6b36c8169fb9_gdc_realn.bam 84393379739 BAM harmonized CPTAC3 7cd7dd5b-4c04-4f55-88c5-73a813a1b7a8 ff192bd497d73a375e8c16b590bd0f15 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.WXS.N C3L-00413 UCEC WXS blood_normal CPT0019850002 CPT0019850002.WholeExome.RP-1303.bam 27438219376 BAM submitted_aligned CPTAC3 ab051c87-a968-4d29-95ee-19a3f915f967 d0cc230241cc0637478d7f23e55a7b75 {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00413.WXS.N.hg38 C3L-00413 UCEC WXS blood_normal CPT0019850002 92bebf14-5fd0-453e-99a3-c7041b9cde22_gdc_realn.bam 37443124568 BAM harmonized CPTAC3 6058412c-d366-44dd-a0fc-4aad9f6166dc 60756ad869ac1870761651cc1209bebf {"aliquot_tag": "ALQ_8b4876b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00413.WXS.T C3L-00413 UCEC WXS tumor CPT0009980006 CPT0009980006.WholeExome.RP-1303.bam 24418130622 BAM submitted_aligned CPTAC3 acc3ff7e-787d-4a13-bb9d-28932a5ca8bb 689a909b07d6303634882adcf924d34d {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00413.WXS.T.hg38 C3L-00413 UCEC WXS tumor CPT0009980006 ef798c59-f595-45b8-960e-6b36c8169fb9_gdc_realn.bam 33283872888 BAM harmonized CPTAC3 f9bf7283-eb23-477d-bc36-b928c96ff1f2 cc3abfb0ba9d096359e5eb382e58c3c9 {"aliquot_tag": "ALQ_7343a522", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.MethArray.Green.A C3L-00415 LSCC Methylation_Array tissue_normal CPT0010060006 203219640102_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 685fe60c-2d8c-495c-a39a-384851c31b57 0a96ad1914098c401c0967fdc465474e {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.MethArray.Green.T C3L-00415 LSCC Methylation_Array tumor CPT0010050006 202184900111_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 97dfa8d8-e76f-4ecc-9bce-068862f97005 a640969765cba375703e85788460e2c6 {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.MethArray.Red.A C3L-00415 LSCC Methylation_Array tissue_normal CPT0010060006 203219640102_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 943aae45-c6d7-4c19-9bd7-c0f7713c2e01 b41e21aecf16552b0ff1ebce1ba3b7e8 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.MethArray.Red.T C3L-00415 LSCC Methylation_Array tumor CPT0010050006 202184900111_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 5bee55ac-1179-42be-8761-cc7e0d1a40d3 79b9ad1953a53140f657f9eae37563cc {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.miRNA-Seq.A.hg38 C3L-00415 LSCC miRNA-Seq tissue_normal CPT0010060009 ff68f43b-737b-4e67-923b-049c1c54b1d8_mirnaseq_gdc_realn.bam 188447500 BAM harmonized CPTAC3 b5a69756-fac6-4c34-929b-b52c970979c0 43f02b98c442aa5feaa9d2e8cd1b9f9f {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.miRNA-Seq.S18_L003_R1.T C3L-00415 LSCC miRNA-Seq tumor CPT0010050009 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L003_R1_001.unaln.bam 201734226 BAM S18_L003_R1 submitted_unaligned CPTAC3 e02e521a-e8e6-44a3-9f1c-490d382d6d9b 51fdab7ceda9c9de060419b9f3c3c42c {"aliquot_tag": "ALQ_65516887", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.miRNA-Seq.S40_L006_R1.A C3L-00415 LSCC miRNA-Seq tissue_normal CPT0010060009 181113_UNC31-K00269_0164_AH23NNBBXY_CCGTCC_S40_L006_R1_001.unaln.bam 166958626 BAM S40_L006_R1 submitted_unaligned CPTAC3 70c8df29-a643-480f-b7d1-914d7d9cbecb 76a26e883be33b540269e95bc8dbe2ed {"aliquot_tag": "ALQ_22f11257", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.miRNA-Seq.T.hg38 C3L-00415 LSCC miRNA-Seq tumor CPT0010050009 9f719a4a-a9b0-4a83-82b3-b1e1178dade5_mirnaseq_gdc_realn.bam 218047899 BAM harmonized CPTAC3 255eea37-2692-45c8-84cf-15fa9e7ff0ea 5b4f53c8b44b8773db58f48427ad278d {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.RNA-Seq.chimeric.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.chimeric.gdc_realn.bam 39453112 BAM chimeric harmonized CPTAC3 1b784dfa-f950-4018-a2e0-849b13d67960 41189350674453aa071289cae59182af {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.RNA-Seq.chimeric.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.chimeric.gdc_realn.bam 137800946 BAM chimeric harmonized CPTAC3 dee732dd-0d32-4c93-ac07-d04e479697e2 cddff14ad6dd368000bdea9a2072e901 {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.RNA-Seq.genomic.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.genomic.gdc_realn.bam 7539237893 BAM genomic harmonized CPTAC3 341e6ec1-fbed-4439-b762-da0b7fe11488 090a34bd90f3358a0a51b2d399774031 {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.RNA-Seq.genomic.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.genomic.gdc_realn.bam 7562413996 BAM genomic harmonized CPTAC3 96821645-887e-4362-b647-d3a28c813597 1c9745ad6af05f11728b83184ff00f78 {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.RNA-Seq.S16_L004_R1.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3647270243 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 8100a0ca-c430-4b33-85cf-3abe321fb359 31bd5bc98c869ec965c2ad2f9bd5fb52 {"aliquot_tag": "ALQ_22f11257", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.RNA-Seq.S16_L004_R2.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3753832644 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 dc450c88-d669-4441-a21f-5acc6150c721 19ee760a4cd348b15f5f52870352f024 {"aliquot_tag": "ALQ_22f11257", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.RNA-Seq.S4_L006_R1.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R1_001.fastq.gz 3765173950 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 49738f7f-2551-46ea-83e9-c36f55a2d3cb b6a35eecb42be2131547a5c3821bd9a6 {"aliquot_tag": "ALQ_65516887", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.RNA-Seq.S4_L006_R2.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R2_001.fastq.gz 4094701287 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 b04807f8-ed2a-4bba-8647-feb8bd679a10 f853d808443d3b17c63f134499ac1bf8 {"aliquot_tag": "ALQ_65516887", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.RNA-Seq.transcriptome.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.transcriptome.gdc_realn.bam 9440510215 BAM transcriptome harmonized CPTAC3 ffdf9074-4efd-4507-94a1-98601bb6627e 27410ab14ba2d44a3d886e71b381c3dd {"aliquot_tag": "ALQ_22f11257", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.RNA-Seq.transcriptome.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.transcriptome.gdc_realn.bam 10288975537 BAM transcriptome harmonized CPTAC3 a17cefd9-50c3-4ceb-95d2-8fc5ba6aa7ac 91e56e65d0d991a74dd8f1ce20c6287e {"aliquot_tag": "ALQ_65516887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.WGS.A C3L-00415 LSCC WGS tissue_normal CPT0010060006 CPT0010060006.WholeGenome.RP-1303.bam 56653408842 BAM submitted_aligned CPTAC3 3d5af375-53b4-4bd2-81ba-8d2fe82e3c0d 42a8deb9d43d03bc1e04127b4ed6f306 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.WGS.A.hg38 C3L-00415 LSCC WGS tissue_normal CPT0010060006 46ef162e-6ea4-45a1-adac-24b1615c7c8a_wgs_gdc_realn.bam 83752007066 BAM harmonized CPTAC3 06add90a-ada5-4b00-88a2-c23331fd9f55 271066884bfc6243d8629676f05dba72 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.WGS.N C3L-00415 LSCC WGS blood_normal CPT0019860002 CPT0019860002.WholeGenome.RP-1303.bam 72720325291 BAM submitted_aligned CPTAC3 5cac4905-b45a-438a-b0ef-a3bc37a0bb93 4a32d5bfe65969d6b108ccedb1526d3d {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00415.WGS.N.hg38 C3L-00415 LSCC WGS blood_normal CPT0019860002 ded35b91-a827-4d01-aba8-765d7ba7e4ac_gdc_realn.bam 107561633801 BAM harmonized CPTAC3 1415f178-da4e-478d-9909-53e201c259e4 5400a92ed7ddaa8e5aba963c266e19fb {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00415.WGS.T C3L-00415 LSCC WGS tumor CPT0010050006 CPT0010050006.WholeGenome.RP-1303.bam 72857802431 BAM submitted_aligned CPTAC3 3c76c2ea-8e4d-40cc-8ac2-696530e1487b 60f44517441cc90286e39efb77c8060d {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.WGS.T.hg38 C3L-00415 LSCC WGS tumor CPT0010050006 6acbde3c-8e88-4c38-85d5-8868552a6441_gdc_realn.bam 107285908367 BAM harmonized CPTAC3 51a9bfe4-562f-44a7-b1c5-e5237c92b927 d2d2d6bd38cfc87a09f48e8f318a1509 {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.WXS.A C3L-00415 LSCC WXS tissue_normal CPT0010060006 CPT0010060006.WholeExome.RP-1303.bam 48248833359 BAM submitted_aligned CPTAC3 9417d8cb-1b83-4b6f-a71a-a75c7b15a53f 92e19f144cd3b9ee5f4cd6abd4834fe1 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.WXS.A.hg38 C3L-00415 LSCC WXS tissue_normal CPT0010060006 46ef162e-6ea4-45a1-adac-24b1615c7c8a_wxs_gdc_realn.bam 64522643308 BAM harmonized CPTAC3 a8abf789-a228-4661-acba-b876daf59b53 6927db17f167636da3a5a10345164697 {"aliquot_tag": "ALQ_b24e0fc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00415.WXS.N C3L-00415 LSCC WXS blood_normal CPT0019860002 CPT0019860002.WholeExome.RP-1303.bam 27749597059 BAM submitted_aligned CPTAC3 8ddd3003-c366-42fe-8378-cd5ae2bb74c5 676d779b4ae7c1d4c114c263f75773e6 {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00415.WXS.N.hg38 C3L-00415 LSCC WXS blood_normal CPT0019860002 ded35b91-a827-4d01-aba8-765d7ba7e4ac_gdc_realn.bam 37758559568 BAM harmonized CPTAC3 9767a9c2-d36b-4cd8-b3bf-e007b9766cc1 153661539f607c30724b01a2b4da1d38 {"aliquot_tag": "ALQ_cce80c61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00415.WXS.T C3L-00415 LSCC WXS tumor CPT0010050006 CPT0010050006.WholeExome.RP-1303.bam 31372704890 BAM submitted_aligned CPTAC3 237555a6-64b3-4186-b811-b9a8c1e54956 9d286a61daf7dbaa01fb832c03a079c5 {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00415.WXS.T.hg38 C3L-00415 LSCC WXS tumor CPT0010050006 6acbde3c-8e88-4c38-85d5-8868552a6441_gdc_realn.bam 43394411617 BAM harmonized CPTAC3 b9f0018b-bfa8-4395-9459-f7adc1fe7cc3 47ab62f38071db31a4382b8b047a869a {"aliquot_tag": "ALQ_f5ee7516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.MethArray.Green.A C3L-00416 CCRCC Methylation_Array tissue_normal CPT0010120009 203027390029_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f87e68ad-e700-473a-8c31-96486ef574cc 145e153cb4ea6d495bcbb01655902d1c {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.MethArray.Green.T C3L-00416 CCRCC Methylation_Array tumor CPT0010110006 202184990063_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a566d64a-d48f-47a3-9050-a57809535ca1 30697ac2ca380d2830cf9990a921b5db {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.MethArray.Red.A C3L-00416 CCRCC Methylation_Array tissue_normal CPT0010120009 203027390029_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 d7b31127-223b-4c8d-92df-f497fb13767e 2d368b830a098045b9b0be3e5f1bee72 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.MethArray.Red.T C3L-00416 CCRCC Methylation_Array tumor CPT0010110006 202184990063_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 0c7fef6d-2e90-4ccd-b9cd-4761fe124b57 b5e0c35e960ec527e4f9f0020f18d9be {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.miRNA-Seq.A.hg38 C3L-00416 CCRCC miRNA-Seq tissue_normal CPT0010120006 0cc44aa0-99c3-4b03-b48a-962194fd24cd_mirnaseq_gdc_realn.bam 222206060 BAM harmonized CPTAC3 13542008-5225-4a0e-9703-e97a71d21553 afd12cc2e1c9a7af74888b1e38cee5ab {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.miRNA-Seq.S19_L004_R1.T C3L-00416 CCRCC miRNA-Seq tumor CPT0010110009 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L004_R1_001.unaln.bam 221983352 BAM S19_L004_R1 submitted_unaligned CPTAC3 5fd421fe-f0d3-487b-b0bc-b365c18f961b 257b3d974a9368f380c3e0397fc39b6d {"aliquot_tag": "ALQ_5b8d1de2", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.miRNA-Seq.S43_L004_R1.A C3L-00416 CCRCC miRNA-Seq tissue_normal CPT0010120006 181108_UNC31-K00269_0163_BH23TVBBXY_TACAGC_S43_L004_R1_001.unaln.bam 199527009 BAM S43_L004_R1 submitted_unaligned CPTAC3 49a2d1d2-0e41-4561-ab42-85f7dddfc5e3 57de0daf0c8d0269625e306c08310a14 {"aliquot_tag": "ALQ_8c927aa3", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.miRNA-Seq.T.hg38 C3L-00416 CCRCC miRNA-Seq tumor CPT0010110009 bd92802d-9e7d-4dd6-bf53-243b2d4a4421_mirnaseq_gdc_realn.bam 241424959 BAM harmonized CPTAC3 0f7cd17a-47f0-4096-862a-a839a2ece81a 43869dd7beb2b733526ff91f672283fc {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.RNA-Seq.chimeric.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.chimeric.gdc_realn.bam 82424783 BAM chimeric harmonized CPTAC3 7c18dcb1-8f59-4b71-ba57-bb0be19132b3 0bc8ade8005632cfb592822d9eada4c9 {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.RNA-Seq.chimeric.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.chimeric.gdc_realn.bam 103205184 BAM chimeric harmonized CPTAC3 9d818be3-95e7-4ddc-838d-97a3d39995d0 8ae9db32a089e263504c4853759a6be1 {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.RNA-Seq.genomic.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.genomic.gdc_realn.bam 8861154512 BAM genomic harmonized CPTAC3 0a904b33-982e-4502-a09e-5708c724239f 70cbcbcc718ffa51ce50007e92fcb80d {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.RNA-Seq.genomic.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.genomic.gdc_realn.bam 7075074193 BAM genomic harmonized CPTAC3 de2604b3-678a-4b6f-a9a2-3cfc60549b0d 10d03f0a7674dda878d52ac686041e3e {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.RNA-Seq.S21_L006_R1.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R1_001.fastq.gz 3776319086 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 2cb1f65c-8544-4a2e-8e53-72184f472a1a 4bbe25de640e3edb7e66600e87da6ab2 {"aliquot_tag": "ALQ_5b8d1de2", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.RNA-Seq.S21_L006_R2.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R2_001.fastq.gz 4118298802 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 ad8325a4-34b9-473f-946e-1a779f0bf08b 8a0499fcd68ec53c276c76dd8460749a {"aliquot_tag": "ALQ_5b8d1de2", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.RNA-Seq.S45_L004_R1.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R1_001.fastq.gz 4155676499 FASTQ S45_L004_R1 submitted_unaligned CPTAC3 3b4d239a-0a2d-426c-916d-d3a8a92b5573 6e8e90e689298ad85e0568fef8a125f7 {"aliquot_tag": "ALQ_8c927aa3", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.RNA-Seq.S45_L004_R2.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R2_001.fastq.gz 4301948352 FASTQ S45_L004_R2 submitted_unaligned CPTAC3 bc1b8613-80a4-4b79-ab7d-479448188861 4c686133dbd6213e5210f4071a527d31 {"aliquot_tag": "ALQ_8c927aa3", "sample": "S45", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.RNA-Seq.transcriptome.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.transcriptome.gdc_realn.bam 9710188396 BAM transcriptome harmonized CPTAC3 0fe65e04-9be9-42dd-aa6e-d4cedb07e4e8 eee66291e1325fca04020df23334b40c {"aliquot_tag": "ALQ_8c927aa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.RNA-Seq.transcriptome.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.transcriptome.gdc_realn.bam 10505420732 BAM transcriptome harmonized CPTAC3 2267b4d1-bda2-433a-a91f-bd24b9b5eb37 f4663cd02bbb95dbb8a85d55a838f3c2 {"aliquot_tag": "ALQ_5b8d1de2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.WGS.A C3L-00416 CCRCC WGS tissue_normal CPT0010120009 CPT0010120009.WholeGenome.RP-1303.bam 52231401379 BAM submitted_aligned CPTAC3 a3691232-f058-4e5b-9aca-ab8756a1cd82 e143204308a81d1630dde547bc22b254 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.WGS.A.hg38 C3L-00416 CCRCC WGS tissue_normal CPT0010120009 11addf54-be1c-4ab9-9aab-ddcd9708392b_wgs_gdc_realn.bam 77064710424 BAM harmonized CPTAC3 be631715-80a0-4730-9295-b69cfa13ff26 a56d21d8e0dae821c4dd53c7cac4dfb6 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.WGS.N C3L-00416 CCRCC WGS blood_normal CPT0019870002 CPT0019870002.WholeGenome.RP-1303.bam 61017682753 BAM submitted_aligned CPTAC3 8b88bfb2-c636-4b0c-8fa6-a739abafb23d c508881ee3bf7d7f0a45b929ab6ed3c7 {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00416.WGS.N.hg38 C3L-00416 CCRCC WGS blood_normal CPT0019870002 d0950d5e-e5ef-4f12-8c6f-3b28522b1778_gdc_realn.bam 87578282192 BAM harmonized CPTAC3 bc2be928-6599-4690-846a-2227c275d164 278206b628696f52d915fa7cea8e85b9 {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00416.WGS.T C3L-00416 CCRCC WGS tumor CPT0010110006 CPT0010110006.WholeGenome.RP-1303.bam 68133628114 BAM submitted_aligned CPTAC3 e5aa9737-b213-4046-99c8-1abea052a0b4 382b6f984bc4469f654e0715cc59157b {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.WGS.T.hg38 C3L-00416 CCRCC WGS tumor CPT0010110006 b6b85465-cb0b-4539-9e85-639a6fe66086_gdc_realn.bam 99980462249 BAM harmonized CPTAC3 27f56b06-46e8-45a5-8bb0-f4c91b69893d 28b5604a08c4533e4ec89d22435acfb4 {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.WXS.A C3L-00416 CCRCC WXS tissue_normal CPT0010120009 CPT0010120009.WholeExome.RP-1303.bam 36117625072 BAM submitted_aligned CPTAC3 2b8a9556-1b0f-44e1-8b7b-356206e38cd7 0f3e51c9ff93fe8e1af10da2fa1ee0cd {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.WXS.A.hg38 C3L-00416 CCRCC WXS tissue_normal CPT0010120009 11addf54-be1c-4ab9-9aab-ddcd9708392b_wxs_gdc_realn.bam 48912416010 BAM harmonized CPTAC3 d04199b0-57db-4f6d-9445-9f0128adbb1e d2fcd9748265d4828274e86d39bec0e5 {"aliquot_tag": "ALQ_1c2d6732", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00416.WXS.N C3L-00416 CCRCC WXS blood_normal CPT0019870002 CPT0019870002.WholeExome.RP-1303.bam 22962372228 BAM submitted_aligned CPTAC3 20c30303-310d-4741-af36-d228ac1c1273 5e8d8d9bab10b42383864eaafd2846bf {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00416.WXS.N.hg38 C3L-00416 CCRCC WXS blood_normal CPT0019870002 d0950d5e-e5ef-4f12-8c6f-3b28522b1778_gdc_realn.bam 31037809714 BAM harmonized CPTAC3 e2a72d3d-3c5f-4a0c-9edb-c6dd309c598d d6bf68de9da9bde686cef1222c7b99cb {"aliquot_tag": "ALQ_f18825d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00416.WXS.T C3L-00416 CCRCC WXS tumor CPT0010110006 CPT0010110006.WholeExome.RP-1303.bam 23982465233 BAM submitted_aligned CPTAC3 3eba30c4-6c5d-4ad0-8bd9-3d7702c3cc7a f1ec465a2f97614270cb63a0bd9061a0 {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00416.WXS.T.hg38 C3L-00416 CCRCC WXS tumor CPT0010110006 b6b85465-cb0b-4539-9e85-639a6fe66086_gdc_realn.bam 33078996768 BAM harmonized CPTAC3 c50c5bcd-3801-4fd5-b0df-b3a834542d18 da1330a496bb723b21d9889fca230a22 {"aliquot_tag": "ALQ_cb320073", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_2112978e.MethArray.Green.T C3L-00418 CCRCC Methylation_Array tumor CPT0006640009 204372030139_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 886efe6c-f014-41d7-844c-6e6be155d8a8 f37cfd3656659892d9b64966f9478578 {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_2112978e.MethArray.Red.T C3L-00418 CCRCC Methylation_Array tumor CPT0006640009 204372030139_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 0f262075-705b-42fd-b3fc-f0db3583afb2 e699a07b12de7279227a64dd5dfb627c {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_2112978e.WGS.T C3L-00418 CCRCC WGS tumor CPT0006640009 CPT0006640009.WholeGenome.RP-2158.bam 24559038885 BAM submitted_aligned CPTAC3 2a7fd171-50e7-432b-aa18-62beb344f20e b1fee4e6b5d952cea66bf91660ca3a9b {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_2112978e.WGS.T.hg38 C3L-00418 CCRCC WGS tumor CPT0006640009 8cf9a884-3e61-443f-8784-17e365f879cd_wgs_gdc_realn.bam 73968649734 BAM harmonized CPTAC3 42e95e0b-d1ea-435d-9ad5-912791b0ae11 dbb2cd3323f5f4f60bf65da1161b85b5 {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_2112978e.WXS.T C3L-00418 CCRCC WXS tumor CPT0006640009 CPT0006640009.WholeExome.RP-1303.bam 22814762937 BAM submitted_aligned CPTAC3 49efab1d-05c1-4860-8a71-1fc788f788af f92ec829b18ec0f790f72c5652fa2f4f {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_2112978e.WXS.T.hg38 C3L-00418 CCRCC WXS tumor CPT0006640009 8cf9a884-3e61-443f-8784-17e365f879cd_wxs_gdc_realn.bam 31109924748 BAM harmonized CPTAC3 05abe915-a00c-43a7-bb15-3cb854536aac 12ca7b694fe5313b3633a21b03139fd8 {"aliquot_tag": "DUP_2112978e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_66b2ed5e.MethArray.Green.T C3L-00418 CCRCC Methylation_Array tumor CPT0006670009 204372030164_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0f673095-3367-47e1-b142-09a66f0f5f62 d7a8cc4abf39ad424d67f15501fad40c {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_66b2ed5e.MethArray.Red.T C3L-00418 CCRCC Methylation_Array tumor CPT0006670009 204372030164_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 a12c43f5-1650-474c-ae88-63fa2302f3f8 9814878e48c58ea1ccacc1d29f8e45c7 {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_66b2ed5e.WGS.T C3L-00418 CCRCC WGS tumor CPT0006670009 CPT0006670009.WholeGenome.RP-2158.bam 22666825920 BAM submitted_aligned CPTAC3 27f10cd5-0080-4a60-b99c-14eaba27ccac d9f7ffbb4d44fc38a68a16e4ce8609ec {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_66b2ed5e.WGS.T.hg38 C3L-00418 CCRCC WGS tumor CPT0006670009 f14f7aeb-9755-4228-9d3a-8d6404e4b3a6_wgs_gdc_realn.bam 64837056758 BAM harmonized CPTAC3 c1ce01d8-738f-4c0d-bf26-e64f4dbfbc06 ad6a8a42a3fbe29546a65a22e04918fa {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_66b2ed5e.WXS.T C3L-00418 CCRCC WXS tumor CPT0006670009 CPT0006670009.WholeExome.RP-1303.bam 20956379244 BAM submitted_aligned CPTAC3 b1332c8f-0f93-4455-aeea-16129fdbb736 b6fe196def5015ab94284e5561e57bb6 {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_66b2ed5e.WXS.T.hg38 C3L-00418 CCRCC WXS tumor CPT0006670009 f14f7aeb-9755-4228-9d3a-8d6404e4b3a6_wxs_gdc_realn.bam 28702238233 BAM harmonized CPTAC3 bd81f716-dc87-41b3-ae23-d9fa25c37a30 97b9d25496f3c735c82ab15eb791f297 {"aliquot_tag": "DUP_66b2ed5e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_b1ad8a1f.miRNA-Seq.S23_L002_R1.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006640006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAAAAG_S23_L002_R1_001.unaln.bam 287268011 BAM S23_L002_R1 submitted_unaligned CPTAC3 4f962193-cd5a-42de-8fd0-df40f0f97db9 600f54223bda111cc1f81973566ad04a {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_b1ad8a1f.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006640006 d20c75ec-7738-49fd-bc04-5aecbb640490_mirnaseq_gdc_realn.bam 322795809 BAM harmonized CPTAC3 15af38d6-1b6c-47ec-905b-7cf6b6fba7bc 6463cb6312704a8be646fe1acbc3b4a4 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_b1ad8a1f.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.chimeric.gdc_realn.bam 45408799 BAM chimeric harmonized CPTAC3 b1b55e04-de3e-438b-82bd-67bfb34a5389 13a387070e7520d66e4661e1e52470aa {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_b1ad8a1f.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.genomic.gdc_realn.bam 7396376926 BAM genomic harmonized CPTAC3 0874e000-1854-475a-b8cb-af856d2a63ab 88e5410f2c566e8aba1dbe5263f65723 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_b1ad8a1f.RNA-Seq.S23_L006_R1.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R1_001.fastq.gz 3456249727 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 f86a8aa3-2366-4dec-81b2-bd0ac65a29f4 c2724b55d4115b06469f124d6120eaa7 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_b1ad8a1f.RNA-Seq.S23_L006_R2.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R2_001.fastq.gz 3947205801 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 998539bc-b93c-4779-b240-b7fd479bde71 fa3bfe113af2f158143009f248613980 {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_b1ad8a1f.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.transcriptome.gdc_realn.bam 10420873871 BAM transcriptome harmonized CPTAC3 a536a5c0-f912-4540-a3b1-75411bad868a 14ccc067b19a1e3900f07ffe4dbd929b {"aliquot_tag": "DUP_b1ad8a1f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_f60df0cf.miRNA-Seq.S24_L002_R1.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006670006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L002_R1_001.unaln.bam 423544457 BAM S24_L002_R1 submitted_unaligned CPTAC3 5a82f5a1-bcc8-4e7c-a660-100f26372508 ad8edad50aa6c7eeba2f81e3f7fb094d {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_f60df0cf.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006670006 99d7de39-a684-4871-9642-fa73ff1a33fa_mirnaseq_gdc_realn.bam 466240308 BAM harmonized CPTAC3 aef293e7-838b-4947-8f8f-9529091e2d2c 28ec4a0b8e619bb9e4231407eaf61cad {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_f60df0cf.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.chimeric.gdc_realn.bam 69517678 BAM chimeric harmonized CPTAC3 3c6366fa-cfcc-44c1-9f9b-a68fd5eb09df 0e118c5528cc246314613adf524eefcb {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_f60df0cf.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.genomic.gdc_realn.bam 8021560633 BAM genomic harmonized CPTAC3 bb26ddae-e83e-4492-b864-acff2028b900 6d2872bc8cb9bf2a33d9a8fd27f88485 {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_f60df0cf.RNA-Seq.S5_L002_R1.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R1_001.fastq.gz 3828295281 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 7976d875-054b-4336-83eb-2a71d65f8d01 d40b59135e3c30024bddeeeda56ea6d1 {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_f60df0cf.RNA-Seq.S5_L002_R2.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R2_001.fastq.gz 4380437830 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 d69436e3-48bf-48d3-b5b3-67fde49da61a 399363a6a726b4b1b373c351ee40ac5c {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.DUP_f60df0cf.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.transcriptome.gdc_realn.bam 11204754864 BAM transcriptome harmonized CPTAC3 429ca441-fb99-40d2-882c-d55a88e17139 4987b3db76f66a10b1f69c72ff36b656 {"aliquot_tag": "DUP_f60df0cf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.MethArray.Green.A C3L-00418 CCRCC Methylation_Array tissue_normal CPT0006730014 204930640051_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 73a1b9b9-7cdc-4790-b1f2-07edee1545bd 1b24aec57f707adb63329f00cc1cf5e6 {"aliquot_tag": "ALQ_3fc4d5c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.MethArray.Green.T C3L-00418 CCRCC Methylation_Array tumor CPT0006630009 202178770008_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8ec5886e-540b-4c06-9d6e-18cab5bd7a91 1b8b51a4f9e29580ca66c78476e50583 {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.MethArray.Red.A C3L-00418 CCRCC Methylation_Array tissue_normal CPT0006730014 204930640051_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 be152dca-4474-402c-80bc-331deb3e6556 00b1e6086b9797e5576de7a7c6a753b9 {"aliquot_tag": "ALQ_3fc4d5c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.MethArray.Red.T C3L-00418 CCRCC Methylation_Array tumor CPT0006630009 202178770008_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 35106cb3-71c4-4e6d-b36b-04e29bfe2723 7803d4c5a5ff122c1cfbc5ae69dca5cb {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.miRNA-Seq.A.hg38 C3L-00418 CCRCC miRNA-Seq tissue_normal CPT0006730006 01af162e-d248-447b-b306-4a10f0696ebf_mirnaseq_gdc_realn.bam 221884944 BAM harmonized CPTAC3 3523caff-06cf-4c7b-a511-14608b2d2ba0 dbc94c20d8479b720104c08dc6eb64e4 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.miRNA-Seq.S13_L005_R1.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006630006 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L005_R1_001.unaln.bam 241201505 BAM S13_L005_R1 submitted_unaligned CPTAC3 20d17324-834b-4935-a393-9e351a37d657 267e107ca5d9f505877da37bac050b34 {"aliquot_tag": "ALQ_38d560f", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.miRNA-Seq.S38_L004_R1.A C3L-00418 CCRCC miRNA-Seq tissue_normal CPT0006730006 181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L004_R1_001.unaln.bam 200119320 BAM S38_L004_R1 submitted_unaligned CPTAC3 5c27c7e9-d1d9-48dc-9dec-9669999b2823 de7cda061e4d8752e43fe9777e767881 {"aliquot_tag": "ALQ_c8d185aa", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006630006 46e647fb-3110-4a7b-b5e6-aee3d5bbe861_mirnaseq_gdc_realn.bam 265917439 BAM harmonized CPTAC3 24d34ef4-d4d5-47c1-96cc-858aca0ee4f3 a258dcd37d2b226f20c0ef4722a271b7 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.RNA-Seq.chimeric.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.chimeric.gdc_realn.bam 45098876 BAM chimeric harmonized CPTAC3 320d9b56-2e9c-4e94-9430-e1b96d8c9def 062d66befc0667f08bfd3f9883c36904 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.chimeric.gdc_realn.bam 66170138 BAM chimeric harmonized CPTAC3 19813f2e-0c87-4fca-8a09-a3be000dd7d5 bf07ba9a201db96e0de34b1e09dd9b34 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.RNA-Seq.genomic.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.genomic.gdc_realn.bam 8333248725 BAM genomic harmonized CPTAC3 cfac19df-712a-48d6-b5ff-85efe0f53ef2 bad1877ca134a2ff97f257681b21f577 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.genomic.gdc_realn.bam 6986256136 BAM genomic harmonized CPTAC3 24e959fe-5b8d-49e2-a105-d3b23452835b 6ad12e0f5a99f92e0bc0ac42c7a2ec87 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.RNA-Seq.S14_L004_R1.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R1_001.fastq.gz 3223751307 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 b67fdb10-3928-4421-894e-628861348b6c f01fe22ecf1155623af3c3f117c9bd01 {"aliquot_tag": "ALQ_38d560f", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.RNA-Seq.S14_L004_R2.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R2_001.fastq.gz 3402799451 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 a3a77dde-7a40-43fa-b991-10fa842d7115 aaf6b0054d2da887bdcef86bd0c1205c {"aliquot_tag": "ALQ_38d560f", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.RNA-Seq.S36_L007_R1.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R1_001.fastq.gz 4038425068 FASTQ S36_L007_R1 submitted_unaligned CPTAC3 e75e4811-3a6a-4467-a0d1-a0282b439dc1 ea76d279b70687eb7711ac703ac26975 {"aliquot_tag": "ALQ_c8d185aa", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.RNA-Seq.S36_L007_R2.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R2_001.fastq.gz 4475052648 FASTQ S36_L007_R2 submitted_unaligned CPTAC3 aeb417bd-16a8-4c0b-85ad-7b361d4a701f bddd330f3c6e36078e79b9451201a657 {"aliquot_tag": "ALQ_c8d185aa", "sample": "S36", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.RNA-Seq.transcriptome.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.transcriptome.gdc_realn.bam 9392721163 BAM transcriptome harmonized CPTAC3 d66c7add-6e8a-430a-bdcc-408e3d211a56 3baf094bf02c2d082c957e031a377a01 {"aliquot_tag": "ALQ_c8d185aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.transcriptome.gdc_realn.bam 9616156958 BAM transcriptome harmonized CPTAC3 7b56318d-01cb-462a-a98e-43a8794d2782 90516e740bd5d8c591f4df44370c7935 {"aliquot_tag": "ALQ_38d560f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.WGS.A C3L-00418 CCRCC WGS tissue_normal CPT0006730009 CPT0006730009.WholeGenome.RP-1303.bam 50879281885 BAM submitted_aligned CPTAC3 08697189-84ba-4286-aab4-91ece3a64da1 fcb000ac2f6b8a92b7c358bdaf69b91b {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.WGS.A.hg38 C3L-00418 CCRCC WGS tissue_normal CPT0006730009 0637f25d-c54f-4f85-b3b5-4fcb7f1d2598_wgs_gdc_realn.bam 74558657539 BAM harmonized CPTAC3 cdca1d3d-5076-4ca0-9881-aeff1631e5b0 f676ba24056a16d761f779dcd0424fc7 {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.WGS.N C3L-00418 CCRCC WGS blood_normal CPT0002730002 CPT0002730002.WholeGenome.RP-1303.bam 56793444132 BAM submitted_aligned CPTAC3 957488af-a20f-4449-afab-f5028fc67ab9 771db0066aa5f7b422ba003e26b3cae0 {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00418.WGS.N.hg38 C3L-00418 CCRCC WGS blood_normal CPT0002730002 a0658f29-2a4f-43c0-8d17-e351ea2f073f_gdc_realn.bam 83377414282 BAM harmonized CPTAC3 2cf61070-2be1-4d25-a4f8-df3b6c57533a f0b5dfc961874990c9f41d7a1dd11f9d {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00418.WGS.T C3L-00418 CCRCC WGS tumor CPT0006630009 CPT0006630009.WholeGenome.RP-1303.bam 71026184649 BAM submitted_aligned CPTAC3 dc49da0c-72ab-4bec-974d-eb5c9508b7ff 9e0cf4d14fd0cfcc25cf9e6ab4b7bc1c {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.WGS.T.hg38 C3L-00418 CCRCC WGS tumor CPT0006630009 1b9f819b-a488-4f4d-8b10-cd30e4ada90c_gdc_realn.bam 100303730473 BAM harmonized CPTAC3 a2dd065d-3f82-4931-a909-2fd96f0fbe58 791d79cc2ad20f37a23a311d46bfc5c0 {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.WXS.A C3L-00418 CCRCC WXS tissue_normal CPT0006730009 CPT0006730009.WholeExome.RP-1303.bam 35946467843 BAM submitted_aligned CPTAC3 a7f87611-4de5-46be-b938-2879ec0a4069 d300393bb6d347985d964cd4cfb928ae {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.WXS.A.hg38 C3L-00418 CCRCC WXS tissue_normal CPT0006730009 0637f25d-c54f-4f85-b3b5-4fcb7f1d2598_wxs_gdc_realn.bam 48630644987 BAM harmonized CPTAC3 b5ae8787-6022-4462-9451-bc8395c1d1f4 3659cfcc5a049864a32f81f7e3b2589c {"aliquot_tag": "ALQ_586e983b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00418.WXS.N C3L-00418 CCRCC WXS blood_normal CPT0002730002 CPT0002730002.WholeExome.RP-1303.bam 23336023161 BAM submitted_aligned CPTAC3 71f44c7a-8e13-4b2f-9a09-fba9d94785d6 e156c1ae08116edd2c757010186145bd {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00418.WXS.N.hg38 C3L-00418 CCRCC WXS blood_normal CPT0002730002 a0658f29-2a4f-43c0-8d17-e351ea2f073f_gdc_realn.bam 31921602535 BAM harmonized CPTAC3 f04b336a-904d-4844-8737-4d84c04119c9 9936d92f0adc6c956b91d67027d537eb {"aliquot_tag": "ALQ_3bf365a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00418.WXS.T C3L-00418 CCRCC WXS tumor CPT0006630009 CPT0006630009.WholeExome.RP-1303.bam 23093054793 BAM submitted_aligned CPTAC3 15bb9d8b-89c1-419f-b615-426795582dfe b718df15f46c6995cc6789c0bb7bb274 {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00418.WXS.T.hg38 C3L-00418 CCRCC WXS tumor CPT0006630009 1b9f819b-a488-4f4d-8b10-cd30e4ada90c_gdc_realn.bam 31097433856 BAM harmonized CPTAC3 4a9f8a4a-599a-4584-8a3f-172e1e4f4f4d 16dc7885f18a7f8be77af21316a3582d {"aliquot_tag": "ALQ_93324b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.MethArray.Green.A C3L-00422 LUAD Methylation_Array tissue_normal CPT0082890009 203028200034_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8a1461f0-4350-4d39-a000-3a009059dbc6 538b5c0f202b233681a0528d6aaa44c4 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.MethArray.Green.T C3L-00422 LUAD Methylation_Array tumor CPT0082850010 202163530118_R07C01_Grn.idat 13676245 IDAT Green NA CPTAC3 09b68940-ba36-4a90-9cf9-eadad4f179ff e0eba61cb20e7f2e293140810ca6ff0e {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.MethArray.Red.A C3L-00422 LUAD Methylation_Array tissue_normal CPT0082890009 203028200034_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 c53623ca-84c7-4437-9272-1bd68ef0fb44 6d703444dd6fc0d34ee3aeee0dc4553f {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.MethArray.Red.T C3L-00422 LUAD Methylation_Array tumor CPT0082850010 202163530118_R07C01_Red.idat 13676245 IDAT Red NA CPTAC3 8e4fd03c-d0a4-4b2c-8fdf-9c001c2dbad7 7a808442af495b20aba2734b39dc7e8e {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.miRNA-Seq.A.hg38 C3L-00422 LUAD miRNA-Seq tissue_normal CPT0082890006 8e97f524-44aa-4722-b069-0cdd0c608c70_mirnaseq_gdc_realn.bam 283797324 BAM harmonized CPTAC3 3479fd06-8375-40e7-86da-06d5af82ff97 77b2fdcf583e083b0f888aa221489418 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.miRNA-Seq.S19_L001_R1.T C3L-00422 LUAD miRNA-Seq tumor CPT0082850007 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L001_R1_001.unaln.bam 223017597 BAM S19_L001_R1 submitted_unaligned CPTAC3 f912e4dd-307c-4378-9c06-55b9c5ca6eba 8cb1209531be0bb40090fa78d397054b {"aliquot_tag": "ALQ_e66acdef", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.miRNA-Seq.S5_L007_R1.A C3L-00422 LUAD miRNA-Seq tissue_normal CPT0082890006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L007_R1_001.unaln.bam 254320575 BAM S5_L007_R1 submitted_unaligned CPTAC3 f808d03a-f796-4a55-8754-c33b52d551f8 91279000cd33cf1236f119fa67b1da84 {"aliquot_tag": "ALQ_549d1078", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.miRNA-Seq.T.hg38 C3L-00422 LUAD miRNA-Seq tumor CPT0082850007 56141fbf-9f28-49f5-be3b-4b85cabcca1e_mirnaseq_gdc_realn.bam 248304381 BAM harmonized CPTAC3 78cb47f4-8e43-4cc9-a66b-ed24982c1af0 5211a43833c1fe9ea4fec5fd3c577d73 {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.RNA-Seq.chimeric.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.chimeric.gdc_realn.bam 106898647 BAM chimeric harmonized CPTAC3 41edd814-dab1-4bd4-a187-b0701664b52f 48f0b0373afd516ba9a7c8959eef66a5 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.RNA-Seq.chimeric.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.chimeric.gdc_realn.bam 51467745 BAM chimeric harmonized CPTAC3 696b9a53-6482-4e05-84e9-74312c0bcbfc 3d5933c901bc5d6c9c9a7925e7530ced {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.RNA-Seq.genomic.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.genomic.gdc_realn.bam 8494366100 BAM genomic harmonized CPTAC3 6d849088-933c-4df8-9c07-556555ace5d6 944db3dec650d2618ce701bc95f65b37 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.RNA-Seq.genomic.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.genomic.gdc_realn.bam 10117344163 BAM genomic harmonized CPTAC3 35c4a4ad-40de-4345-b26b-cfbccbca07ae 6da68742e0601d49268f9533a8edea87 {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.RNA-Seq.S12_L003_R1.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3939767531 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 2e2c1c3d-c88d-4da0-831b-64c75634c028 0f020142ccc60cac81885eed3aceef62 {"aliquot_tag": "ALQ_e66acdef", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.RNA-Seq.S12_L003_R2.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4292587036 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 ff0c14f2-d588-418c-aee7-cde1c2d0626d 895c75a3c93cf973581b6ede2d7a2b70 {"aliquot_tag": "ALQ_e66acdef", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.RNA-Seq.S14_L005_R1.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R1_001.fastq.gz 4141870363 FASTQ S14_L005_R1 submitted_unaligned CPTAC3 b30ea0f2-faf1-4078-b0cd-40ed56bb3a94 403b72634b293f4334654a163ac61931 {"aliquot_tag": "ALQ_549d1078", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.RNA-Seq.S14_L005_R2.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R2_001.fastq.gz 4602244724 FASTQ S14_L005_R2 submitted_unaligned CPTAC3 689d2a3b-e398-4784-99c8-313b41a8a86d ca7949e245de4ab1dc992694fa82100c {"aliquot_tag": "ALQ_549d1078", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.RNA-Seq.transcriptome.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.transcriptome.gdc_realn.bam 10540194402 BAM transcriptome harmonized CPTAC3 3553d147-84de-4d9b-a5b9-4f2ebacec1ea 377e4115ac2d81dd360b90194f3ffe74 {"aliquot_tag": "ALQ_549d1078", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.RNA-Seq.transcriptome.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.transcriptome.gdc_realn.bam 10750414035 BAM transcriptome harmonized CPTAC3 3c0fef25-cd43-41b5-aeaa-9d4a10efdee0 6c38f046bd7e392d43c77f631addfa7f {"aliquot_tag": "ALQ_e66acdef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.WGS.A C3L-00422 LUAD WGS tissue_normal CPT0082890009 CPT0082890009.WholeGenome.RP-1303.bam 61601457533 BAM submitted_aligned CPTAC3 f421f40a-4209-4a54-b26a-e6f1c1cbe562 401c366c6e58188b1a4189376f5a56a5 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.WGS.A.hg38 C3L-00422 LUAD WGS tissue_normal CPT0082890009 1468d8d0-c4b4-4c00-b057-97b8d19a4bd8_wgs_gdc_realn.bam 90428630751 BAM harmonized CPTAC3 dbb6185c-c7a6-48ac-aae4-76f64052eae7 bf88cba96ec06138a4537df58f9f8c20 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.WGS.N C3L-00422 LUAD WGS blood_normal CPT0081740002 CPT0081740002.WholeGenome.RP-1303.bam 67954113413 BAM submitted_aligned CPTAC3 18acf0ad-1681-48f4-9431-9e6e83bde515 98a5b6aaa118aaf24b0d050fc8a6f6a1 {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00422.WGS.N.hg38 C3L-00422 LUAD WGS blood_normal CPT0081740002 37d21656-4deb-40ff-9aee-4f619a70bb4b_gdc_realn.bam 102785940242 BAM harmonized CPTAC3 844da3e5-7f5e-49be-843a-62ebc6fce4b5 e631912630e9681f0b4dffac0fe4e5b0 {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00422.WGS.T C3L-00422 LUAD WGS tumor CPT0082850010 CPT0082850010.WholeGenome.RP-1303.bam 66731324504 BAM submitted_aligned CPTAC3 99506e6a-6f6d-444e-ad3b-a91737d26500 0eb190d6a9cbb74fc90062411875f502 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.WGS.T.hg38 C3L-00422 LUAD WGS tumor CPT0082850010 d2779a54-6282-4c22-a689-d752fbdc3b21_gdc_realn.bam 100368722134 BAM harmonized CPTAC3 8ddc9c82-e2aa-46ca-b3cd-491c194219bb 4a76625a9ead3240861fa82cf6f68d40 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.WXS.A C3L-00422 LUAD WXS tissue_normal CPT0082890009 CPT0082890009.WholeExome.RP-1303.bam 40496744342 BAM submitted_aligned CPTAC3 845cfdff-a9b1-4ceb-bc45-0661a77acf6e 5d0e1f59665c1b6e28d7887f34c3bce9 {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.WXS.A.hg38 C3L-00422 LUAD WXS tissue_normal CPT0082890009 1468d8d0-c4b4-4c00-b057-97b8d19a4bd8_wxs_gdc_realn.bam 54298231140 BAM harmonized CPTAC3 2a2e8292-90a0-494b-af3c-6b78153e25a1 415842ee3ab78315aef99a8828232a5a {"aliquot_tag": "ALQ_c4220de9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00422.WXS.N C3L-00422 LUAD WXS blood_normal CPT0081740002 CPT0081740002.WholeExome.RP-1303.bam 24830161891 BAM submitted_aligned CPTAC3 1d864cea-5532-43a4-bb3c-b945a23e1532 98f43531853e710a9b984a6375b22d31 {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00422.WXS.N.hg38 C3L-00422 LUAD WXS blood_normal CPT0081740002 37d21656-4deb-40ff-9aee-4f619a70bb4b_gdc_realn.bam 34558769145 BAM harmonized CPTAC3 79be3375-4849-4bb2-ac6e-f30cba74c8c2 c1d1d45351fb8d28f5d4cd098cd037ee {"aliquot_tag": "ALQ_6bdeb898", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00422.WXS.T C3L-00422 LUAD WXS tumor CPT0082850010 CPT0082850010.WholeExome.RP-1303.bam 25543519280 BAM submitted_aligned CPTAC3 62080a81-fdcd-4f02-9bf7-b58574406d09 6a1397f074bcb68b64a109a65be18478 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00422.WXS.T.hg38 C3L-00422 LUAD WXS tumor CPT0082850010 d2779a54-6282-4c22-a689-d752fbdc3b21_gdc_realn.bam 34835997820 BAM harmonized CPTAC3 191ab7f2-92dc-450a-8860-7510e5210f53 2db57b5fdd009e6e1687cd83dba3c201 {"aliquot_tag": "ALQ_6115690d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.MethArray.Green.A C3L-00444 LUAD Methylation_Array tissue_normal CPT0130570006 203219650202_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c382b116-03f4-492c-ab44-96dbb8a83903 5f8f892ccceeaf01513010b1221ebf1e {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.MethArray.Green.T C3L-00444 LUAD Methylation_Array tumor CPT0130600006 203219640172_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ad4f9d96-a87c-4da2-bd1f-203cfaa4885e be1475635d47db2aeae0b95077fdf526 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.MethArray.Red.A C3L-00444 LUAD Methylation_Array tissue_normal CPT0130570006 203219650202_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 db816a66-4d33-4bf4-9a91-8a4af36bd199 f0768ce2a3f5a27e1d20bcea6422663d {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.MethArray.Red.T C3L-00444 LUAD Methylation_Array tumor CPT0130600006 203219640172_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 71085014-704a-4d62-b1ac-e39d87be7e58 aa8e8e2f4905c26f8be46ba2857ae224 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.miRNA-Seq.A.hg38 C3L-00444 LUAD miRNA-Seq tissue_normal CPT0130570009 ffab4bae-4ef2-4832-a194-52bef09b380c_mirnaseq_gdc_realn.bam 282031841 BAM harmonized CPTAC3 302b6318-7bfb-4c09-a0d3-a3833790c81c 8db076b9041f6893dd5e0ec2d5883709 {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.miRNA-Seq.S15_L004_R1.A C3L-00444 LUAD miRNA-Seq tissue_normal CPT0130570009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L004_R1_001.unaln.bam 252797529 BAM S15_L004_R1 submitted_unaligned CPTAC3 7cb8b27a-773a-4ddd-905c-619a99f07274 f592010eff2c12bb8e350f3b1e94b3c9 {"aliquot_tag": "ALQ_1a02b96a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.miRNA-Seq.S37_L007_R1.T C3L-00444 LUAD miRNA-Seq tumor CPT0130600009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L007_R1_001.unaln.bam 238012107 BAM S37_L007_R1 submitted_unaligned CPTAC3 4b5495c1-01a4-4503-a68d-949f4832688e ef6d9d995ec3ad1d02b92b7ec71fe3a9 {"aliquot_tag": "ALQ_2eb617d4", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.miRNA-Seq.T.hg38 C3L-00444 LUAD miRNA-Seq tumor CPT0130600009 3bef9438-f83c-451b-be66-749023f11e7a_mirnaseq_gdc_realn.bam 263817728 BAM harmonized CPTAC3 84c65ec5-a8bd-417b-ad23-9f456cad5b34 d6260a651892eee55ea6ed0da96e9e41 {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.RNA-Seq.chimeric.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.chimeric.gdc_realn.bam 33747280 BAM chimeric harmonized CPTAC3 39ce72a0-2e18-46c6-a823-50e5a6bf2a03 2bf9f160fa2941fa07b40c6bc4c6dccf {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.RNA-Seq.chimeric.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.chimeric.gdc_realn.bam 46533687 BAM chimeric harmonized CPTAC3 453997eb-0ad1-45c5-84d3-fce40cb7c22c c82c1c2f291bf2753e93d8967193fc14 {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.RNA-Seq.genomic.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.genomic.gdc_realn.bam 7765672002 BAM genomic harmonized CPTAC3 36b34e03-8d9f-4bc3-bbac-04a741ad8073 561be81362e51de649074c5dde1b65a2 {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.RNA-Seq.genomic.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.genomic.gdc_realn.bam 9300700164 BAM genomic harmonized CPTAC3 0493f327-f60c-4002-ab36-2a1b4ffbcc92 cfea4be5f51aa732bc32ac827950ea0a {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.RNA-Seq.S13_L004_R1.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R1_001.fastq.gz 4036401107 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 b6490610-1ed9-4419-ba29-bf212c549bf2 a03be3480e50456a3dbf1334031e5383 {"aliquot_tag": "ALQ_2eb617d4", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.RNA-Seq.S13_L004_R2.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R2_001.fastq.gz 4421338294 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 1ac9bf23-6370-44fd-8861-57ccb30bb6d0 d63287897bdb5f08c7454ee02f12670c {"aliquot_tag": "ALQ_2eb617d4", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.RNA-Seq.S6_L002_R1.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R1_001.fastq.gz 3670326581 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 331f7d00-b768-43d2-98ed-aa61ed897322 48eeecab45b4bf293ab6c531e71ba33d {"aliquot_tag": "ALQ_1a02b96a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.RNA-Seq.S6_L002_R2.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R2_001.fastq.gz 3948621402 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 155744ac-8c8c-4c44-bf98-dad598363c9e 204626595559b98a908c723dc7e05a2f {"aliquot_tag": "ALQ_1a02b96a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.RNA-Seq.transcriptome.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.transcriptome.gdc_realn.bam 9595016465 BAM transcriptome harmonized CPTAC3 0bf65306-7851-4d30-a143-1aebd393f317 e9679239832bb956a159f6f9c98c7a3d {"aliquot_tag": "ALQ_1a02b96a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.RNA-Seq.transcriptome.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.transcriptome.gdc_realn.bam 8968804196 BAM transcriptome harmonized CPTAC3 97224e73-39e0-40a7-88c3-33351cbcf878 ed460c9858e8e340962eac9be8f6859a {"aliquot_tag": "ALQ_2eb617d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.WGS.A C3L-00444 LUAD WGS tissue_normal CPT0130570006 CPT0130570006.WholeGenome.RP-1303.bam 55210446209 BAM submitted_aligned CPTAC3 79b224e0-a014-4040-828c-68b58c672ce2 353503fe828c36b6fce8873891facd19 {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.WGS.A.hg38 C3L-00444 LUAD WGS tissue_normal CPT0130570006 207dfc06-0684-4fb5-b41e-b086e29ed031_wgs_gdc_realn.bam 80353184323 BAM harmonized CPTAC3 52849fba-9ad9-4809-b5e3-7ecd13c8fe47 4ef1bb60cacdc2aec936d630613ea62d {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.WGS.N C3L-00444 LUAD WGS blood_normal CPT0130670001 CPT0130670001.WholeGenome.RP-1303.bam 61867552537 BAM submitted_aligned CPTAC3 f23e66f5-b0e5-401e-aa9a-bca9890eb875 a2a140affea4b96187f0608077681adc {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00444.WGS.N.hg38 C3L-00444 LUAD WGS blood_normal CPT0130670001 f18e1637-2c6e-4970-a4e5-bcf58991b13d_wgs_gdc_realn.bam 89460173970 BAM harmonized CPTAC3 871ed22a-9e21-48ce-a4a1-08eff04a2069 21d30f1d098eeda000fd1facfa24f401 {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00444.WGS.T C3L-00444 LUAD WGS tumor CPT0130600006 CPT0130600006.WholeGenome.RP-1303.bam 70129150399 BAM submitted_aligned CPTAC3 94dcc54c-a55a-4ac6-aad9-93811c620e9a efed3890a2e66e78df4abfc08da65c33 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.WGS.T.hg38 C3L-00444 LUAD WGS tumor CPT0130600006 3dbbf0d2-e67d-4401-8199-a2377fac5565_wgs_gdc_realn.bam 103668090021 BAM harmonized CPTAC3 7915db03-94ac-4cc3-85f2-b44fe4ed0296 4a5c6d240b7b030417d58c0b1120c548 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.WXS.A C3L-00444 LUAD WXS tissue_normal CPT0130570006 CPT0130570006.WholeExome.RP-1303.bam 23816901953 BAM submitted_aligned CPTAC3 0243e0ab-85b1-4bb8-a3dc-35e96ae1807f 96b2e88f9d5550a95cc26241de10a2e5 {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.WXS.A.hg38 C3L-00444 LUAD WXS tissue_normal CPT0130570006 207dfc06-0684-4fb5-b41e-b086e29ed031_wxs_gdc_realn.bam 33144843450 BAM harmonized CPTAC3 efaeff8a-b42e-49fa-8f89-a847b4cb67d5 1978074bb8fdba88da9e4a8b0bc1ecb8 {"aliquot_tag": "ALQ_8abda4fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00444.WXS.N C3L-00444 LUAD WXS blood_normal CPT0130670001 CPT0130670001.WholeExome.RP-1303.bam 22960006195 BAM submitted_aligned CPTAC3 8d5a6857-d8d5-4593-bd35-b53cf3f3ed9f b6fb0ee1df5224de9b41468c73fb67cd {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00444.WXS.N.hg38 C3L-00444 LUAD WXS blood_normal CPT0130670001 f18e1637-2c6e-4970-a4e5-bcf58991b13d_wxs_gdc_realn.bam 31263724202 BAM harmonized CPTAC3 bdfb9339-ba92-4f83-bad7-80168a77a95e 9d3b6a5e365f335fcda24b38a6c2c3f9 {"aliquot_tag": "ALQ_924d43f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00444.WXS.T C3L-00444 LUAD WXS tumor CPT0130600006 CPT0130600006.WholeExome.RP-1303.bam 24146657501 BAM submitted_aligned CPTAC3 2af5bcfa-9435-436c-89bd-39abf13cd815 41a02683d14cb8ebc85d75d509287466 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00444.WXS.T.hg38 C3L-00444 LUAD WXS tumor CPT0130600006 3dbbf0d2-e67d-4401-8199-a2377fac5565_wxs_gdc_realn.bam 32275079728 BAM harmonized CPTAC3 c71d112f-c054-4d0d-9081-9d9e664f18ee d9db4b25ca6d08cd5f1cdc19dd5c2b39 {"aliquot_tag": "ALQ_be090a45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.MethArray.Green.A C3L-00445 LSCC Methylation_Array tissue_normal CPT0130440007 203271750057_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 dbaf6739-bc9a-4c5c-bd6c-22d4505be790 77e76588c76b544152a690bdf78f37a8 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.MethArray.Green.T C3L-00445 LSCC Methylation_Array tumor CPT0130410009 203028200100_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c0bd6545-f450-4a73-88a7-1cb4a5e624ca f6a541ac2ef7934ad4a948f5b2feb32e {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.MethArray.Red.A C3L-00445 LSCC Methylation_Array tissue_normal CPT0130440007 203271750057_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 dbe747d9-2088-43d2-838c-b068505cb043 a5a81cff118a0632273972ab0b94bc23 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.MethArray.Red.T C3L-00445 LSCC Methylation_Array tumor CPT0130410009 203028200100_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 2b8e22f9-5a5e-4760-80c3-3bcc5d03084e d518e2ea09cb567c1f60579dd5f40a26 {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.miRNA-Seq.A.hg38 C3L-00445 LSCC miRNA-Seq tissue_normal CPT0130440010 f6a28d82-7623-4ef1-ace8-1b8fdb69ad09_mirnaseq_gdc_realn.bam 202593807 BAM harmonized CPTAC3 4964b500-bb90-4561-8540-4e4c20a82571 2dc28ef20c7a9aa777bfd6b2db3b11e0 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.miRNA-Seq.S19_L001_R1.T C3L-00445 LSCC miRNA-Seq tumor CPT0130410006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGAAA_S19_L001_R1_001.unaln.bam 246908244 BAM S19_L001_R1 submitted_unaligned CPTAC3 97f19311-0706-4ad2-977d-6bb44f259df6 c63597bea4e520905545504b940510bf {"aliquot_tag": "ALQ_cea182fe", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.miRNA-Seq.S26_L002_R1.A C3L-00445 LSCC miRNA-Seq tissue_normal CPT0130440010 181219_UNC31-K00269_0173_BHYGJJBBXX_ATTCCT_S26_L002_R1_001.unaln.bam 180559533 BAM S26_L002_R1 submitted_unaligned CPTAC3 bb5c491d-d7a2-4f5f-9dfc-381543bc0350 aad13b0b4a28811d255098ebb06d45d9 {"aliquot_tag": "ALQ_f63999fa", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.miRNA-Seq.T.hg38 C3L-00445 LSCC miRNA-Seq tumor CPT0130410006 525aa0a6-4323-442d-bf53-fd0458e5c174_mirnaseq_gdc_realn.bam 277882210 BAM harmonized CPTAC3 3ef8a762-8800-432f-aeb8-92988f49004d c2be7af2352f95f2aa8eaf72c3b7e1a1 {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.RNA-Seq.chimeric.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.chimeric.gdc_realn.bam 28371098 BAM chimeric harmonized CPTAC3 73fb63cd-84f8-4383-ae88-fe56f730b05e 778b92ebf83c5d74bb823ca022fb4169 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.RNA-Seq.chimeric.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.chimeric.gdc_realn.bam 27998406 BAM chimeric harmonized CPTAC3 5aa38bbf-064c-4b7c-adfb-dc62624315dc 69dc44b3e7995e1d6d8b1a25cd40175d {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.RNA-Seq.genomic.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.genomic.gdc_realn.bam 8828821078 BAM genomic harmonized CPTAC3 c9927615-1f3e-4fdd-b6ee-1856de5dc4be 6a4cfe98e93a51c5077c142a4426b634 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.RNA-Seq.genomic.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.genomic.gdc_realn.bam 8054442925 BAM genomic harmonized CPTAC3 a1c9522f-1281-40dc-a1a9-60c74dcebe79 5e6ecaed670b6779051b3dafa51e7600 {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.RNA-Seq.S10_L003_R1.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3969350594 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 adcf873e-8068-482d-86f6-c45269581947 6e01d754d63841208b1cad9bfc07630e {"aliquot_tag": "ALQ_f63999fa", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.RNA-Seq.S10_L003_R2.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 4181183944 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 a0e1915a-e37d-43c9-9057-a6ceb942130e 982c8009c6024ea1752513ae9c365b73 {"aliquot_tag": "ALQ_f63999fa", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.RNA-Seq.S1_L001_R1.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 3582948269 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 fe878db6-3333-4bca-9757-acca87223d7d b533a94727d3bf9727b8415e56f72159 {"aliquot_tag": "ALQ_cea182fe", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.RNA-Seq.S1_L001_R2.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 3993491560 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 ce3eb190-137f-44cc-8ee9-5427aa689226 23c7f0c5555ef4c90acc7948756e62e1 {"aliquot_tag": "ALQ_cea182fe", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.RNA-Seq.transcriptome.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.transcriptome.gdc_realn.bam 11810084243 BAM transcriptome harmonized CPTAC3 80ee4b0b-7df0-4556-b4f0-26c5afc6beca f972682fe6d259274cff556af2589650 {"aliquot_tag": "ALQ_f63999fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.RNA-Seq.transcriptome.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.transcriptome.gdc_realn.bam 9801766325 BAM transcriptome harmonized CPTAC3 82b187bc-93d5-4696-8b40-75fe2f72cd8b c9fe25709f872b963e24408a6beba3b9 {"aliquot_tag": "ALQ_cea182fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.WGS.A C3L-00445 LSCC WGS tissue_normal CPT0130440007 CPT0130440007.WholeGenome.RP-1303.bam 53123947589 BAM submitted_aligned CPTAC3 fc9c7dd2-24a7-4dc1-bd5c-4af36ee8fffd e5cc1aacc23be319f5e0a0327e653e7e {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.WGS.A.hg38 C3L-00445 LSCC WGS tissue_normal CPT0130440007 8e464f1c-a960-4810-a984-75d62f2086e8_wgs_gdc_realn.bam 77751126157 BAM harmonized CPTAC3 4a6a8d58-bc2b-4629-a6d5-a003bb1f77b8 b7ebebd1e41253f1bee3bb781230bd20 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.WGS.N C3L-00445 LSCC WGS blood_normal CPT0130530002 CPT0130530002.WholeGenome.RP-1303.bam 49804639138 BAM submitted_aligned CPTAC3 ba34a361-b5b3-4a95-a4ed-40c4eb0282da 67f11d0992e25b371d1ab994e74c825d {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00445.WGS.N.hg38 C3L-00445 LSCC WGS blood_normal CPT0130530002 671050aa-def8-4a5c-9101-f9e53d9e8fe4_wgs_gdc_realn.bam 72801510671 BAM harmonized CPTAC3 446f4c05-4489-4fcb-bdae-f7111851ad05 e4f881ebca6a5a26c469012a6a278545 {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00445.WGS.T C3L-00445 LSCC WGS tumor CPT0130410009 CPT0130410009.WholeGenome.RP-1303.bam 62582941204 BAM submitted_aligned CPTAC3 fc39d74e-4ef9-4e94-86af-ea6ebbc50c5d 8528561a37daf7fd5405f8c0ddbeb4da {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.WGS.T.hg38 C3L-00445 LSCC WGS tumor CPT0130410009 0a402562-24c6-4a9f-af18-9c5ac968f866_wgs_gdc_realn.bam 89533514743 BAM harmonized CPTAC3 f8228dc0-a129-4009-9833-236447a5e66d 83925aa4fda6dd25365449beeeb699c6 {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.WXS.A C3L-00445 LSCC WXS tissue_normal CPT0130440007 CPT0130440007.WholeExome.RP-1303.bam 24712302961 BAM submitted_aligned CPTAC3 a7262133-009d-487b-a3cb-5bc3f60fbb3d a50d0b5b45703ea3f619b8964b16ac3d {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.WXS.A.hg38 C3L-00445 LSCC WXS tissue_normal CPT0130440007 8e464f1c-a960-4810-a984-75d62f2086e8_wxs_gdc_realn.bam 33747938560 BAM harmonized CPTAC3 a2c16597-0c0a-4069-8386-d055bd2ad43d ff1f111a595f02ec5cd57904d369f9f4 {"aliquot_tag": "ALQ_71463d18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00445.WXS.N C3L-00445 LSCC WXS blood_normal CPT0130530002 CPT0130530002.WholeExome.RP-1303.bam 25736379859 BAM submitted_aligned CPTAC3 f4c454af-5ee4-4291-b0f6-5daa7241c94f 16dca8696e0dca7a52899ab03de96b92 {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00445.WXS.N.hg38 C3L-00445 LSCC WXS blood_normal CPT0130530002 671050aa-def8-4a5c-9101-f9e53d9e8fe4_wxs_gdc_realn.bam 35167405100 BAM harmonized CPTAC3 c84accfb-8a6a-4727-9b19-3ed0e410622e 93a1320f4d8e71e5d28f9948ee883b45 {"aliquot_tag": "ALQ_7850c622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00445.WXS.T C3L-00445 LSCC WXS tumor CPT0130410009 CPT0130410009.WholeExome.RP-1303.bam 27750445222 BAM submitted_aligned CPTAC3 0253b78c-0d24-498d-a701-38def1b50376 dec618b353ae6a14cce8a060a07368ac {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00445.WXS.T.hg38 C3L-00445 LSCC WXS tumor CPT0130410009 0a402562-24c6-4a9f-af18-9c5ac968f866_wxs_gdc_realn.bam 38846497772 BAM harmonized CPTAC3 bda0039c-16cd-49a8-82de-43a50339a47d c62a7aaa4560f982ab828e342310d338 {"aliquot_tag": "ALQ_5e1e9f6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.MethArray.Green.A C3L-00446 LUAD Methylation_Array tissue_normal CPT0129790006 203028200100_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6139b38e-c8e8-456f-9069-29edcb361594 c3f11b993832c320abd093e847d7f7b4 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.MethArray.Green.T C3L-00446 LUAD Methylation_Array tumor CPT0129030006 203220070082_R04C01_Grn.idat 13676225 IDAT Green NA CPTAC3 bc616636-7ef6-4f1c-ad2e-aff4b6636da9 80201cd8a70df0a65225e2ea62d248a0 {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.MethArray.Red.A C3L-00446 LUAD Methylation_Array tissue_normal CPT0129790006 203028200100_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 3e24dc21-7e4b-425a-b064-cbfb53648809 88ad4f1bcbf3691ce940dba5e45a31fd {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.MethArray.Red.T C3L-00446 LUAD Methylation_Array tumor CPT0129030006 203220070082_R04C01_Red.idat 13676225 IDAT Red NA CPTAC3 c6d9c570-5f67-4c1c-ae28-f70a8eec3a0b b6044131ad8952ed81196b65b73e083d {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.miRNA-Seq.A.hg38 C3L-00446 LUAD miRNA-Seq tissue_normal CPT0129790009 39f8d9cf-6a27-4a7b-8186-3d3cde93f184_mirnaseq_gdc_realn.bam 251490691 BAM harmonized CPTAC3 f137a364-3997-4b3a-91d9-9856502775c1 5f0f7a44a5477c298d905e1dd062591d {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.miRNA-Seq.S18_L006_R1.T C3L-00446 LUAD miRNA-Seq tumor CPT0129030009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L006_R1_001.unaln.bam 173612857 BAM S18_L006_R1 submitted_unaligned CPTAC3 68497aea-6170-4e14-9f69-ba138758b38f 71441cd1201245d8f225f42b30de5ffb {"aliquot_tag": "ALQ_e67dcb54", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.miRNA-Seq.S5_L008_R1.A C3L-00446 LUAD miRNA-Seq tissue_normal CPT0129790009 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L008_R1_001.unaln.bam 231612895 BAM S5_L008_R1 submitted_unaligned CPTAC3 1c8d6734-b092-40d4-b8ac-3c2eacbf7f13 ded1e74f9f37cf58136e85c60bb1039f {"aliquot_tag": "ALQ_b1c8e34d", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.miRNA-Seq.T.hg38 C3L-00446 LUAD miRNA-Seq tumor CPT0129030009 3d4e48fb-e1d8-4924-807e-e21825aab250_mirnaseq_gdc_realn.bam 190825628 BAM harmonized CPTAC3 5acc5aed-a59b-4989-b650-3a27d9560154 8156e6fbb7749d97ebfd08d783265a41 {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.RNA-Seq.chimeric.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.chimeric.gdc_realn.bam 398598616 BAM chimeric harmonized CPTAC3 5bc5b475-e014-40de-b403-3e8c9f711fd0 c80539fba3adcdd1ca5f6e611d18b81a {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.RNA-Seq.chimeric.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.chimeric.gdc_realn.bam 53943736 BAM chimeric harmonized CPTAC3 fbe1df05-8c7a-446b-be06-0df7fd0b3054 166f576843c6b8c6b94d545331631885 {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.RNA-Seq.genomic.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.genomic.gdc_realn.bam 8962548599 BAM genomic harmonized CPTAC3 8ea927fc-f5fb-4264-b33e-12eb0a193dff 431c3b0c45b658dc716097f691a9ef9e {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.RNA-Seq.genomic.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.genomic.gdc_realn.bam 11445245281 BAM genomic harmonized CPTAC3 565bb203-0fcb-42e6-bcb9-d9986ee8745b 886bcf45c04dffb6ffadc5eb17cb80bb {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.RNA-Seq.S20_L006_R1.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R1_001.fastq.gz 5082749836 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 6dc12a76-42da-4bb6-a37c-e7b2600633f0 116ffc92ade2da42358c167c56532627 {"aliquot_tag": "ALQ_e67dcb54", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.RNA-Seq.S20_L006_R2.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R2_001.fastq.gz 5819146639 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 7c60aa89-72b4-4919-b828-99f4a5a033e2 1f43bebe62f95497f6d1c268482b6473 {"aliquot_tag": "ALQ_e67dcb54", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.RNA-Seq.S21_L007_R1.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R1_001.fastq.gz 4029820827 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 d5219752-cb3f-4079-bef2-b7e0401b1cb9 d929713ddcafdc9a16763fb42dec783d {"aliquot_tag": "ALQ_b1c8e34d", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.RNA-Seq.S21_L007_R2.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R2_001.fastq.gz 4205733924 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 e720a590-dbd9-4648-9c4c-80155cfecff4 4378f03865d8fb92cd7812b4a2f458c3 {"aliquot_tag": "ALQ_b1c8e34d", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.RNA-Seq.transcriptome.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.transcriptome.gdc_realn.bam 8836701859 BAM transcriptome harmonized CPTAC3 7e01347b-f720-4ba6-8bc4-d25562f6bebd ea783a8213a35f877ece07ca323c5047 {"aliquot_tag": "ALQ_b1c8e34d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.RNA-Seq.transcriptome.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.transcriptome.gdc_realn.bam 12910183351 BAM transcriptome harmonized CPTAC3 8ae9c2c3-9bbf-4533-b2f6-a84f6c48b311 2540fab33e80bfe10d1544c3db8a1181 {"aliquot_tag": "ALQ_e67dcb54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.WGS.A C3L-00446 LUAD WGS tissue_normal CPT0129790006 CPT0129790006.WholeGenome.RP-1303.bam 57633000886 BAM submitted_aligned CPTAC3 6473b6f8-f5a0-42ef-9443-54414c9b7daf 7e70541d01e8444e758112da4fa60211 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.WGS.A.hg38 C3L-00446 LUAD WGS tissue_normal CPT0129790006 75048cfb-71f1-4fdf-b78c-aa86369f3619_wgs_gdc_realn.bam 84118607107 BAM harmonized CPTAC3 47fd5108-15bb-4eeb-9810-6a7a9a4ff02b 45eed63bc3a86879422a1a0db5cb4839 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.WGS.N C3L-00446 LUAD WGS blood_normal CPT0129890002 CPT0129890002.WholeGenome.RP-1303.bam 54829670427 BAM submitted_aligned CPTAC3 9b2acfe7-2ce3-452a-a5b2-95a5e3b1d546 c894d5cb1570601c74daabd4c7f7be11 {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00446.WGS.N.hg38 C3L-00446 LUAD WGS blood_normal CPT0129890002 99f55744-433e-48b2-bec7-34b3d3f1b297_wgs_gdc_realn.bam 80588309709 BAM harmonized CPTAC3 7560b484-dee8-4f0e-ac15-5f46d77cb5eb 104fbd2edf9545463779411827782ba0 {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00446.WGS.T C3L-00446 LUAD WGS tumor CPT0129030006 CPT0129030006.WholeGenome.RP-1303.bam 55539018349 BAM submitted_aligned CPTAC3 7d7605f9-40ab-4f07-902a-7a9b5bd3b66b 14cc8fff98e1ce1e72cadb7fe41d5092 {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.WGS.T.hg38 C3L-00446 LUAD WGS tumor CPT0129030006 8817b640-f385-4838-a90d-56e2deed4b68_wgs_gdc_realn.bam 80390375511 BAM harmonized CPTAC3 3dd2e673-ebc0-4df1-b382-8c0c45641738 c30a83c95c21671b88731d06bb59366e {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.WXS.A C3L-00446 LUAD WXS tissue_normal CPT0129790006 CPT0129790006.WholeExome.RP-1303.bam 38663792709 BAM submitted_aligned CPTAC3 cd1854e9-67ae-4cd8-8ea1-a5f0a822c7db 9045df6cfcd657d2d9ba4352a3d41f67 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.WXS.A.hg38 C3L-00446 LUAD WXS tissue_normal CPT0129790006 75048cfb-71f1-4fdf-b78c-aa86369f3619_wxs_gdc_realn.bam 53506884084 BAM harmonized CPTAC3 a34d7335-657d-47b2-b59a-7e9458bd2945 0c13e4af35a9e778184751b7c5ab4cf1 {"aliquot_tag": "ALQ_2177fedc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00446.WXS.N C3L-00446 LUAD WXS blood_normal CPT0129890002 CPT0129890002.WholeExome.RP-1303.bam 26236915513 BAM submitted_aligned CPTAC3 787b1233-1426-4028-9577-d0e076487f22 24db61d3ba5c81e18dd342644882a007 {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00446.WXS.N.hg38 C3L-00446 LUAD WXS blood_normal CPT0129890002 99f55744-433e-48b2-bec7-34b3d3f1b297_wxs_gdc_realn.bam 36158628285 BAM harmonized CPTAC3 04947b5f-dc66-4460-bff9-43d7e27fb097 697856d74e9fa6653b15fcaf4a8df35f {"aliquot_tag": "ALQ_d74c8810", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00446.WXS.T C3L-00446 LUAD WXS tumor CPT0129030006 CPT0129030006.WholeExome.RP-1303.bam 27949123385 BAM submitted_aligned CPTAC3 7cca201c-ce6d-4dc5-8da8-64fe394a3ba2 702d455475995e0a83fb581ea25c3dfa {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00446.WXS.T.hg38 C3L-00446 LUAD WXS tumor CPT0129030006 8817b640-f385-4838-a90d-56e2deed4b68_wxs_gdc_realn.bam 38601455048 BAM harmonized CPTAC3 19ea98c8-3932-4c17-9fe9-c2db50c1b277 ecd35252812d7968fe62b65a910aaef8 {"aliquot_tag": "ALQ_76c2d6c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.ANN_25c4839b.MethArray.Green.T C3L-00447 CCRCC Methylation_Array tumor CPT0006900009 202163550072_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 90dcff0b-8ea6-48cc-aa80-468c8d008295 308280c02bf7993326e61bafc9eae6f2 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.ANN_25c4839b.MethArray.Red.T C3L-00447 CCRCC Methylation_Array tumor CPT0006900009 202163550072_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 662536f1-4b03-4d05-99ed-76413c86db69 64cdbd550bf1b895fe5416d6f0fa1eaa {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.ANN_25c4839b.WGS.T C3L-00447 CCRCC WGS tumor CPT0006900009 CPT0006900009.WholeGenome.RP-1303.bam 64589818148 BAM submitted_aligned CPTAC3 08889ecf-1144-45f9-a2b2-788eab1878c0 06bd989cb3640479da2046820e88a3dc {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.ANN_25c4839b.WGS.T.hg38 C3L-00447 CCRCC WGS tumor CPT0006900009 51b9c76b-1f15-4493-9047-0d661fe133b6_gdc_realn.bam 94012938866 BAM harmonized CPTAC3 8f2765e2-9bb1-4389-9c21-4b2603e7d778 d671af92d4d28b7bfa2b96c08ca7a329 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.ANN_25c4839b.WXS.T C3L-00447 CCRCC WXS tumor CPT0006900009 CPT0006900009.WholeExome.RP-1303.bam 22912254096 BAM submitted_aligned CPTAC3 c564ce17-728a-45f0-afde-06061e1aff45 921b4613f831cbe80ee7b6e422571107 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.ANN_25c4839b.WXS.T.hg38 C3L-00447 CCRCC WXS tumor CPT0006900009 51b9c76b-1f15-4493-9047-0d661fe133b6_gdc_realn.bam 31067852101 BAM harmonized CPTAC3 532f1bc2-2f90-4838-a000-aa75969e323c 099a35bda961bcd2947e0c8ebbe02e26 {"aliquot_tag": "ANN_25c4839b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_18a4aa2b.MethArray.Green.T C3L-00447 CCRCC Methylation_Array tumor CPT0006910009 204367490082_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a0b2c3d0-ec99-445c-a66f-8423a4ffd0b5 cc000eca2a14d0b0b7f7536fdd255856 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_18a4aa2b.MethArray.Red.T C3L-00447 CCRCC Methylation_Array tumor CPT0006910009 204367490082_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 7fa1fdda-b818-4891-8ca1-71d28278bd2e 176c319dbca909c9474598976f35a6a1 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_18a4aa2b.WGS.T C3L-00447 CCRCC WGS tumor CPT0006910009 CPT0006910009.WholeGenome.RP-2158.bam 30525517897 BAM submitted_aligned CPTAC3 ff1095f4-7715-4739-9b27-be289c05e2a4 019b40ca01ece47931ea36e3c25b18f6 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_18a4aa2b.WGS.T.hg38 C3L-00447 CCRCC WGS tumor CPT0006910009 b83ac703-865f-4ab2-bc70-64b2aa2b0dc3_wgs_gdc_realn.bam 91857748028 BAM harmonized CPTAC3 cd3091b7-a8c0-4c4d-af7a-59ca029ed061 a6c040d4f602078628ecba3af90ef3b9 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_18a4aa2b.WXS.T C3L-00447 CCRCC WXS tumor CPT0006910009 CPT0006910009.WholeExome.RP-1303.bam 49548117424 BAM submitted_aligned CPTAC3 edad4172-5c85-4a93-aaff-46201aa1735e c2aaa9d00c14fe64c932937e04b8dde4 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_18a4aa2b.WXS.T.hg38 C3L-00447 CCRCC WXS tumor CPT0006910009 b83ac703-865f-4ab2-bc70-64b2aa2b0dc3_wxs_gdc_realn.bam 68337491521 BAM harmonized CPTAC3 8aa9a5f4-4769-4f4e-8e32-d7d1f634d01b c84d47c7e5939815b822fc64d561b874 {"aliquot_tag": "DUP_18a4aa2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_61d8a59e.MethArray.Green.T C3L-00447 CCRCC Methylation_Array tumor CPT0006860009 204367490151_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 76e867b5-95e0-4f06-bca4-a0822ba07174 cf7b6a2ce7f5ff10a88360ab3c1c3e54 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_61d8a59e.MethArray.Red.T C3L-00447 CCRCC Methylation_Array tumor CPT0006860009 204367490151_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 bcc90441-619b-452f-8e88-ee119dc5b378 080ebfbd7a647f0df5d67366635d2a2d {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_61d8a59e.WGS.T C3L-00447 CCRCC WGS tumor CPT0006860009 CPT0006860009.WholeGenome.RP-2158.bam 27008577940 BAM submitted_aligned CPTAC3 21a01e12-7b34-467c-8381-00b68b22df8c 7a4028450bcd03fb9590639f9173eb82 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_61d8a59e.WGS.T.hg38 C3L-00447 CCRCC WGS tumor CPT0006860009 8905f8f8-c66d-4893-ad4f-a158b3023f20_wgs_gdc_realn.bam 77143257414 BAM harmonized CPTAC3 44bb34eb-03ab-461f-96d7-dfd80c5bb507 26502373b87217369574bda182bdc58a {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_61d8a59e.WXS.T C3L-00447 CCRCC WXS tumor CPT0006860009 CPT0006860009.WholeExome.RP-1303.bam 20997947433 BAM submitted_aligned CPTAC3 83b7c6d0-5703-4399-adc1-75ccebd187df cc1517746f4be8c7a772721c37296d09 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_61d8a59e.WXS.T.hg38 C3L-00447 CCRCC WXS tumor CPT0006860009 8905f8f8-c66d-4893-ad4f-a158b3023f20_wxs_gdc_realn.bam 28971883153 BAM harmonized CPTAC3 9d5950fd-fe30-4c96-bbc9-e0bd350a3698 fd16b8d99a6ee0cf6bbca673e26aeee5 {"aliquot_tag": "DUP_61d8a59e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_881bb7ba.miRNA-Seq.S25_L002_R1.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006910006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACGAT_S25_L002_R1_001.unaln.bam 459652727 BAM S25_L002_R1 submitted_unaligned CPTAC3 edf69397-2751-4ef7-8150-4090301046e5 1f3ffabc1bbb61858e3ce0b4dc1dbe7f {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_881bb7ba.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006910006 4a4937df-521c-4d92-8bef-ed029f4f5f4a_mirnaseq_gdc_realn.bam 502929455 BAM harmonized CPTAC3 c678e232-a714-4b57-bfd1-1247329c8a8f dd2f98545ca0347d61d5487451cf6b10 {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_881bb7ba.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.chimeric.gdc_realn.bam 74371764 BAM chimeric harmonized CPTAC3 e7ad69ec-c0aa-4312-9b5a-57e99579d4fc d0fc1162bff5ab8e1eea5bb88a97d18c {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_881bb7ba.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.genomic.gdc_realn.bam 8344558021 BAM genomic harmonized CPTAC3 76792916-3f4e-457b-a37d-cf8cdafcbb81 d079814d7d83b124d280167183855e6e {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_881bb7ba.RNA-Seq.S7_L002_R1.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3933557689 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 e11e8977-2f36-41fa-89b5-ce5d4071ef1c 30c85b9af3d32f90ea0b640f216a0ca9 {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_881bb7ba.RNA-Seq.S7_L002_R2.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4568321600 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 0e933d02-8f5a-4490-af96-56d3d88d7c2f dee9ca9a943eeeca1fea3f1f0517f8bd {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_881bb7ba.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.transcriptome.gdc_realn.bam 11237389246 BAM transcriptome harmonized CPTAC3 2856e914-5a6c-4757-821a-36c824a825c1 50676ededab49eb09264654043d70f73 {"aliquot_tag": "DUP_881bb7ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_f167b80f.miRNA-Seq.S3_L002_R1.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006860006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L002_R1_001.unaln.bam 281773618 BAM S3_L002_R1 submitted_unaligned CPTAC3 1517c841-4eeb-4d80-8b70-a6ac61b7fde2 515b6b7f16a0737fd38cb9284f85f7ec {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_f167b80f.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006860006 f06b2a06-4874-418f-ac56-445c1553c9d2_mirnaseq_gdc_realn.bam 312853517 BAM harmonized CPTAC3 0ececd7e-cc13-4e78-bb59-75bc51439270 9bc772ccc6bba69fd0879c1fc09d97f1 {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_f167b80f.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.chimeric.gdc_realn.bam 64438220 BAM chimeric harmonized CPTAC3 52dcc0d3-49ee-4aec-8d32-06f3e4a92f5a 604b0077fb9748662a250c9e5a00e8b0 {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_f167b80f.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.genomic.gdc_realn.bam 7828047599 BAM genomic harmonized CPTAC3 3cc33ac0-ad9e-4d90-b519-9628790e9309 efebd75a51a22d0f7d3f71c2dbd61d0a {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_f167b80f.RNA-Seq.S6_L002_R1.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R1_001.fastq.gz 3734743600 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 274c496d-765e-4014-aa7a-d298cace23eb 98c2084c5b5c039ac465246c6d97ce6c {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_f167b80f.RNA-Seq.S6_L002_R2.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R2_001.fastq.gz 4225260777 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 6ca2d9b8-2ef8-4a01-a7a7-c62215ea68fd d68f04908a78bcdf6e6cd51e76578be0 {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.DUP_f167b80f.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.transcriptome.gdc_realn.bam 10106412268 BAM transcriptome harmonized CPTAC3 61c431dd-48da-4717-8804-2c8c7578ef35 bd5dcc5c867566e405e7393e51863ffa {"aliquot_tag": "DUP_f167b80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.MethArray.Green.A C3L-00447 CCRCC Methylation_Array tissue_normal CPT0006950014 204930630084_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 be349024-ec31-4e8c-bf5e-1207e8b254ea d16de51045a5a83cd1d3d1c8866f772c {"aliquot_tag": "ALQ_8a8e4117", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.MethArray.Red.A C3L-00447 CCRCC Methylation_Array tissue_normal CPT0006950014 204930630084_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 7a73a8fc-bbe7-40b1-bec2-a83a7fd0dba6 4ec0875163e51eb9ff7fddde94f9e388 {"aliquot_tag": "ALQ_8a8e4117", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.miRNA-Seq.A.hg38 C3L-00447 CCRCC miRNA-Seq tissue_normal CPT0006950006 59e90c96-de91-44b2-b044-984edc20044e_mirnaseq_gdc_realn.bam 206332528 BAM harmonized CPTAC3 add8dcbf-d451-4788-915f-5e468b203a97 1441fd50f3b063a6265c623d45759466 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.miRNA-Seq.S14_L005_R1.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006900006 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L005_R1_001.unaln.bam 198207328 BAM S14_L005_R1 submitted_unaligned CPTAC3 f4bee798-04aa-4916-a12b-3baff5c84f62 9efa6ab1688c9413ff6bdc12a28d94f4 {"aliquot_tag": "ALQ_b57b9e0a", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.miRNA-Seq.S39_L004_R1.A C3L-00447 CCRCC miRNA-Seq tissue_normal CPT0006950006 181108_UNC31-K00269_0163_BH23TVBBXY_CTATAC_S39_L004_R1_001.unaln.bam 184484485 BAM S39_L004_R1 submitted_unaligned CPTAC3 0e5e857a-40cf-4e10-a339-14007a0ea64e 439e340029f2e7ef32e96c90323647db {"aliquot_tag": "ALQ_7d9b117a", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006900006 359e8028-d344-4f5f-80aa-e2e0a76fdf61_mirnaseq_gdc_realn.bam 220556502 BAM harmonized CPTAC3 9bc49b4a-43c2-43ea-972b-5fdca4d22608 0f911137d3aabe7cbc7969a3d636ee51 {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.RNA-Seq.chimeric.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.chimeric.gdc_realn.bam 67887427 BAM chimeric harmonized CPTAC3 79b95f69-5e70-4c75-b57e-b6e21c58eed3 cce7c4f9f75d9a654970b2d5d4119fe2 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.chimeric.gdc_realn.bam 68008806 BAM chimeric harmonized CPTAC3 390c490d-f090-446c-96ff-36b313532938 66851ec8d5b001479d92074af0ef2487 {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.RNA-Seq.genomic.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.genomic.gdc_realn.bam 6208589454 BAM genomic harmonized CPTAC3 6c268e9f-ea29-4d66-976b-a5b54351443f 01ea9ab2a9fd1106fa5fa308ad3106f8 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.genomic.gdc_realn.bam 8040630704 BAM genomic harmonized CPTAC3 f9b4a6ed-4c5c-45d0-9b34-7276c2975cbc ca29289b04c566f99fd743e5318e6abe {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.RNA-Seq.S13_L004_R1.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R1_001.fastq.gz 3819481651 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 a408e8ca-1132-4cbf-bf67-5c76b012a2b7 2ebd59f8005dc4222e71005d293a9b86 {"aliquot_tag": "ALQ_b57b9e0a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.RNA-Seq.S13_L004_R2.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R2_001.fastq.gz 3892291967 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 4690c1e9-6e9e-4f8f-b36a-e88f0fc5eb44 ae8f79377081648b4e22ae70e18f3013 {"aliquot_tag": "ALQ_b57b9e0a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.RNA-Seq.S48_L005_R1.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R1_001.fastq.gz 3268525725 FASTQ S48_L005_R1 submitted_unaligned CPTAC3 2b47995f-8175-4d08-96ac-f52a5bc41aa5 24f670a190e51197348450229a4015fa {"aliquot_tag": "ALQ_7d9b117a", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.RNA-Seq.S48_L005_R2.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R2_001.fastq.gz 3459761848 FASTQ S48_L005_R2 submitted_unaligned CPTAC3 e0807d28-39f2-4c6c-bd40-371a132840a8 87667a71505a8e833e20817dec9110a8 {"aliquot_tag": "ALQ_7d9b117a", "sample": "S48", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.RNA-Seq.transcriptome.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.transcriptome.gdc_realn.bam 8094615375 BAM transcriptome harmonized CPTAC3 d0dbdc7c-d428-4e10-b7cc-c280ba6c4ffc df6ac44df30d4abb54cae96417afd433 {"aliquot_tag": "ALQ_7d9b117a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.transcriptome.gdc_realn.bam 10052022014 BAM transcriptome harmonized CPTAC3 deae93bf-2d6b-4164-a140-c0324af3d95d 671ac1fa9aa9e77cbf8010b755a16ec0 {"aliquot_tag": "ALQ_b57b9e0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00447.WGS.A C3L-00447 CCRCC WGS tissue_normal CPT0006950009 CPT0006950009.WholeGenome.RP-1303.bam 60240452401 BAM submitted_aligned CPTAC3 f3e6620b-16da-4707-be82-5b9be904677c b5f2ce9ecc1c05464409d264858889e8 {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.WGS.A.hg38 C3L-00447 CCRCC WGS tissue_normal CPT0006950009 675b1ebb-93a6-4a42-ba1f-aae866df5e02_wgs_gdc_realn.bam 88502185607 BAM harmonized CPTAC3 bc9ee663-4493-40b7-96c5-ebf358ce0d24 6d92c757a8270b46eac112e4bbfdc733 {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.WGS.N C3L-00447 CCRCC WGS blood_normal CPT0002760002 CPT0002760002.WholeGenome.RP-1303.bam 68003274140 BAM submitted_aligned CPTAC3 cd01374b-f105-4efc-aec2-2babfede450d c22f9c4990b36d59af98bab9818236d1 {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00447.WGS.N.hg38 C3L-00447 CCRCC WGS blood_normal CPT0002760002 2acf7759-a2bf-47a0-b5e9-f32f6d1dd576_gdc_realn.bam 101050468340 BAM harmonized CPTAC3 d2ec79c3-3ba9-4a98-b238-2a6dee356493 822c5e3b6b6bc9973b5fa55e0a0764bc {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00447.WXS.A C3L-00447 CCRCC WXS tissue_normal CPT0006950009 CPT0006950009.WholeExome.RP-1303.bam 32516193226 BAM submitted_aligned CPTAC3 f5847097-6ea7-4c1f-8185-9ab16c196a66 9dd1a2ca22badc92e953220e606ac1c0 {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.WXS.A.hg38 C3L-00447 CCRCC WXS tissue_normal CPT0006950009 675b1ebb-93a6-4a42-ba1f-aae866df5e02_wxs_gdc_realn.bam 44243834783 BAM harmonized CPTAC3 a303ecdb-a13a-4903-a1de-929f509971bc 913bd1675792b2047bacb194c7e6ad5c {"aliquot_tag": "ALQ_ed240ceb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00447.WXS.N C3L-00447 CCRCC WXS blood_normal CPT0002760002 CPT0002760002.WholeExome.RP-1303.bam 22369156445 BAM submitted_aligned CPTAC3 e13596df-ab0a-4528-9479-d471822c71ec 4713f5a633d12899666994c31fcffcb6 {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00447.WXS.N.hg38 C3L-00447 CCRCC WXS blood_normal CPT0002760002 2acf7759-a2bf-47a0-b5e9-f32f6d1dd576_gdc_realn.bam 30882813614 BAM harmonized CPTAC3 5fcfa123-8827-4519-aefb-b0189ae82dc8 cf9ad0b46f5678903e0c5c56eb827368 {"aliquot_tag": "ALQ_f313ead0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00448.MethArray.Green.A C3L-00448 CCRCC Methylation_Array tissue_normal CPT0010170009 204930640051_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 236cfcd2-d98a-48b6-8671-8038a401f9d0 c8920fc2a446ce461b49fb0ed1e186ae {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.MethArray.Green.T C3L-00448 CCRCC Methylation_Array tumor CPT0010160006 202163550115_R02C01_Grn.idat 13676230 IDAT Green NA CPTAC3 aa70c016-7c19-43bf-a766-58db0fe32bd8 b3ce3c97e2dab9315ebc99dae1c76400 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.MethArray.Red.A C3L-00448 CCRCC Methylation_Array tissue_normal CPT0010170009 204930640051_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 36b43a18-e01f-4290-9e6d-337f6c429788 9e9fc3bede5c5d3b51af15d8db2eb61b {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.MethArray.Red.T C3L-00448 CCRCC Methylation_Array tumor CPT0010160006 202163550115_R02C01_Red.idat 13676230 IDAT Red NA CPTAC3 d08e3acc-3ecf-479b-88a9-46b778805e24 583e07433f11ef7df28c9d102e451d44 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.miRNA-Seq.A.hg38 C3L-00448 CCRCC miRNA-Seq tissue_normal CPT0010170006 4ab7c4fd-0030-4364-9000-792fe1ca535f_mirnaseq_gdc_realn.bam 261612138 BAM harmonized CPTAC3 c632e773-060b-4e66-b327-d97aad68c219 811b73edc59bf80063f3a37078605f47 {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.miRNA-Seq.S20_L004_R1.T C3L-00448 CCRCC miRNA-Seq tumor CPT0010160009 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L004_R1_001.unaln.bam 221766038 BAM S20_L004_R1 submitted_unaligned CPTAC3 db5ecb7b-d039-478f-998f-84d02a69990c a98d0e5e854dbb9a8a26ac6889d4fb0c {"aliquot_tag": "ALQ_e9adc1f2", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.miRNA-Seq.S44_L004_R1.A C3L-00448 CCRCC miRNA-Seq tissue_normal CPT0010170006 181108_UNC31-K00269_0163_BH23TVBBXY_TATAAT_S44_L004_R1_001.unaln.bam 240097002 BAM S44_L004_R1 submitted_unaligned CPTAC3 c5d548fe-ffa4-4901-94ed-b0320a570814 263fff5f0607047bbe74861d911abaad {"aliquot_tag": "ALQ_4472f5d3", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.miRNA-Seq.T.hg38 C3L-00448 CCRCC miRNA-Seq tumor CPT0010160009 1f02511f-4274-47d0-aa08-8d6ad7b1e363_mirnaseq_gdc_realn.bam 245351635 BAM harmonized CPTAC3 1cd59866-09fa-46f6-be9a-70f79234b508 6a51d9599ca2b70a34da3d7acf2bf5d4 {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.RNA-Seq.chimeric.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.chimeric.gdc_realn.bam 92397272 BAM chimeric harmonized CPTAC3 3cd56efb-c2da-4541-9cf9-7a049daf672d 8c5f9b1920a6ee35739bd9fef9839ed2 {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.RNA-Seq.chimeric.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.chimeric.gdc_realn.bam 136401882 BAM chimeric harmonized CPTAC3 c1b3b543-38b4-4529-9ba6-1ae0993cb508 9b2d5e163af3f5c4abb2209815555e5f {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.RNA-Seq.genomic.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.genomic.gdc_realn.bam 8013111817 BAM genomic harmonized CPTAC3 6e148aff-5aba-42a2-b5ff-5f81f3d7d5da 8908c4a404b9496f11ae6fd498dfde4d {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.RNA-Seq.genomic.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.genomic.gdc_realn.bam 7211488627 BAM genomic harmonized CPTAC3 f9fa4f23-f59a-4e0c-8f68-f06b3f7d6119 0bee55218b03db2c07945397556ebeec {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.RNA-Seq.S22_L006_R1.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3754468444 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 d1a97b50-e454-4328-9721-c42b5b0fbf77 6db9e5ea09fc22134621e23ab91ae7d1 {"aliquot_tag": "ALQ_e9adc1f2", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.RNA-Seq.S22_L006_R2.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4057485300 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 f8cb4da2-4715-47ba-b2ce-6ca381286e33 d3b3c4616803057ecc473ebba596db7a {"aliquot_tag": "ALQ_e9adc1f2", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.RNA-Seq.S6_L008_R1.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R1_001.fastq.gz 3512494128 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 6e349078-0a09-424f-b71a-8b7828baef69 d1af5af64060798f4cc11fad695b034d {"aliquot_tag": "ALQ_4472f5d3", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.RNA-Seq.S6_L008_R2.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R2_001.fastq.gz 3947658167 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 155f1043-34af-4c84-8f61-0f31e6d74e78 068eb50eb8f964eea3c9c9a76c04811a {"aliquot_tag": "ALQ_4472f5d3", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.RNA-Seq.transcriptome.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.transcriptome.gdc_realn.bam 8662135619 BAM transcriptome harmonized CPTAC3 def89b91-aeaf-4d43-99e4-b40fb67c5660 f114a9d431f16cdfb32e539cbf61b1fc {"aliquot_tag": "ALQ_4472f5d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.RNA-Seq.transcriptome.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.transcriptome.gdc_realn.bam 10339706680 BAM transcriptome harmonized CPTAC3 a1a3add0-730d-4140-b98a-2581416c1e99 0cbab83304425a22c425d728fb143529 {"aliquot_tag": "ALQ_e9adc1f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.WGS.A C3L-00448 CCRCC WGS tissue_normal CPT0010170009 CPT0010170009.WholeGenome.RP-1303.bam 67511754016 BAM submitted_aligned CPTAC3 29fb0150-46f1-4dab-9623-f02ced83a3a1 d1ced1b8f153f1b08c46ad3592343a82 {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.WGS.A.hg38 C3L-00448 CCRCC WGS tissue_normal CPT0010170009 a1652ca5-7ad7-429a-ad21-e87be1f47801_wgs_gdc_realn.bam 98056521119 BAM harmonized CPTAC3 d85b0929-ca79-4a1d-930e-9ff3ea19ab19 d47f620ce617a4fc9e8d4c9c22b92140 {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.WGS.N C3L-00448 CCRCC WGS blood_normal CPT0019880002 CPT0019880002.WholeGenome.RP-1303.bam 56987130312 BAM submitted_aligned CPTAC3 a2eaaec0-542b-4405-8419-957c7fa17ae4 4dc039374f8c173fa596a76d5ef7903c {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00448.WGS.N.hg38 C3L-00448 CCRCC WGS blood_normal CPT0019880002 202bd835-a4df-46f0-b2d6-6494f37fead8_gdc_realn.bam 83459940966 BAM harmonized CPTAC3 315c8756-87ef-4620-a436-99ce446d9ca6 e674a6e819d1c8fee182cf4044d903de {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00448.WGS.T C3L-00448 CCRCC WGS tumor CPT0010160006 CPT0010160006.WholeGenome.RP-1303.bam 65252699548 BAM submitted_aligned CPTAC3 1f37730e-3748-4345-9b45-74dd338d727f db641b52fdabc6e830dc9462c0153b39 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.WGS.T.hg38 C3L-00448 CCRCC WGS tumor CPT0010160006 c3fde858-d1da-49bc-b32c-c10227fa28fb_gdc_realn.bam 95423542957 BAM harmonized CPTAC3 5fd869b5-46a2-416e-ad29-81af97074ef7 c5e55fd7969732b77923d8f8726294e8 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.WXS.A C3L-00448 CCRCC WXS tissue_normal CPT0010170009 CPT0010170009.WholeExome.RP-1303.bam 48601649839 BAM submitted_aligned CPTAC3 82584318-4734-408e-8fbb-aff6064d271d 3d194f57a44c0c251dccdaed0b59980d {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.WXS.A.hg38 C3L-00448 CCRCC WXS tissue_normal CPT0010170009 a1652ca5-7ad7-429a-ad21-e87be1f47801_wxs_gdc_realn.bam 66556653213 BAM harmonized CPTAC3 33f45a60-1b4d-4826-9e53-68f39203b9aa 09e01857d1742a815acf5695528453d8 {"aliquot_tag": "ALQ_d4cde842", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00448.WXS.N C3L-00448 CCRCC WXS blood_normal CPT0019880002 CPT0019880002.WholeExome.RP-1303.bam 23109357002 BAM submitted_aligned CPTAC3 24d0876b-0071-4559-b985-e0b1681c7d93 6d0361b0575383476f78d5bec97ac524 {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00448.WXS.N.hg38 C3L-00448 CCRCC WXS blood_normal CPT0019880002 202bd835-a4df-46f0-b2d6-6494f37fead8_gdc_realn.bam 31319090845 BAM harmonized CPTAC3 6a64be8d-b163-43be-bba5-ed310b4603df a3ec03a9ecd48e4d6de3475535b9cacd {"aliquot_tag": "ALQ_73d8b200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00448.WXS.T C3L-00448 CCRCC WXS tumor CPT0010160006 CPT0010160006.WholeExome.RP-1303.bam 22106746406 BAM submitted_aligned CPTAC3 4a37a5f3-2a43-4cbc-a246-6eb7ada48ee6 3c48e103fecf308ab7c02c52a559ebbc {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00448.WXS.T.hg38 C3L-00448 CCRCC WXS tumor CPT0010160006 c3fde858-d1da-49bc-b32c-c10227fa28fb_gdc_realn.bam 30021939338 BAM harmonized CPTAC3 1c240bd3-cd33-44a0-a46b-ac813412bb81 c7b1239e3a7bd05dd63757467ffaaf00 {"aliquot_tag": "ALQ_7912dc63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.MethArray.Green.T C3L-00449 UCEC Methylation_Array tumor CPT0007100009 202176300001_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7e08f48b-6753-4514-a243-d915eaf129da 7d1fdd788d30436885df2a035f9f5d1d {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.MethArray.Red.T C3L-00449 UCEC Methylation_Array tumor CPT0007100009 202176300001_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 561249a0-6ec0-47ae-9122-635692c38203 f84de308503a0b8c3a14a1ef6638fc33 {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.miRNA-Seq.S15_L005_R1.T C3L-00449 UCEC miRNA-Seq tumor CPT0007100006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L005_R1_001.unaln.bam 214438051 BAM S15_L005_R1 submitted_unaligned CPTAC3 e88f8cbc-1200-4154-94e7-7c16a5abaecb c55f9b2c507087c5ca63140d9e4674c0 {"aliquot_tag": "ALQ_ff5f17d3", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.miRNA-Seq.T.hg38 C3L-00449 UCEC miRNA-Seq tumor CPT0007100006 3cc09b8a-a2cf-4fe4-a333-f9f10fb7cee6_mirnaseq_gdc_realn.bam 237632892 BAM harmonized CPTAC3 73a3b68e-4cb7-4291-ad9a-63a975773791 85bc82d68a0828c714d34a5f258e5d7e {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.chimeric.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.chimeric.gdc_realn.bam 88485323 BAM chimeric harmonized CPTAC3 587ef1a4-dc28-4d53-a81e-c53df6c0108c 38e4df5f3326a22602ce4d1811aed978 {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.chimeric.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.chimeric.gdc_realn.bam 153084134 BAM chimeric harmonized CPTAC3 bb85598a-0292-4dde-9036-84a9a7a4db72 c259ff72e1a885cbfec1a3501910be6e {"aliquot_tag": "ALQ_23e627ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.genomic.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.genomic.gdc_realn.bam 8284152182 BAM genomic harmonized CPTAC3 7e293398-10dc-4689-a8e0-6a5567150eae 35749b6a79f0a700b9b7a0604db5e913 {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.genomic.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.genomic.gdc_realn.bam 7470227648 BAM genomic harmonized CPTAC3 ecd3fe52-ea4c-4791-8a9c-e2c6f34acb23 1671d352267e2f2c6e8eeac84650f75a {"aliquot_tag": "ALQ_23e627ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.S16_L004_R1.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R1_001.fastq.gz 3891984320 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 f77c5bff-f9df-4a57-a2e9-391fcd5a6ba2 4103f8be23739f9355b27a84122672cd {"aliquot_tag": "ALQ_ff5f17d3", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.S16_L004_R2.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R2_001.fastq.gz 4249237550 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 1faa1af4-b72b-4267-a86a-893fa2f67d7f 6b08d6e0720c2963040e16ffd6db3f7c {"aliquot_tag": "ALQ_ff5f17d3", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.S40_R1.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R1_001.fastq.gz 4197933703 FASTQ S40_R1 submitted_unaligned CPTAC3 ed0bf20a-e2ae-4473-a73a-dab717bbd173 84ae2ddb5700c0d64a416ba0cb8ceea1 {"aliquot_tag": "ALQ_23e627ba", "sample": "S40", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.S40_R2.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R2_001.fastq.gz 4350501314 FASTQ S40_R2 submitted_unaligned CPTAC3 88876704-973d-4605-b97f-b3dd61e4a2a1 0c11987b303fd4b8599005e92b18bbf1 {"aliquot_tag": "ALQ_23e627ba", "sample": "S40", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.transcriptome.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.transcriptome.gdc_realn.bam 11653781607 BAM transcriptome harmonized CPTAC3 d82c17aa-52cc-4f9c-a9d5-be2ddffda9af 70493903f32fb5d0f9b773660e0dd01d {"aliquot_tag": "ALQ_ff5f17d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.RNA-Seq.transcriptome.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.transcriptome.gdc_realn.bam 3770838634 BAM transcriptome harmonized CPTAC3 6f6f8d4a-065e-4ffe-a8a8-aa99d4a13240 7cd4b7bd4bf92e30117fe6411ecf8e7d {"aliquot_tag": "ALQ_23e627ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.WGS.N C3L-00449 UCEC WGS blood_normal CPT0002770002 CPT0002770002.WholeGenome.RP-1303.bam 81149681684 BAM submitted_aligned CPTAC3 dbc49891-a7fd-4ef3-8c4e-f4edc7a5024d 9173f9205964fba9b71dde665ba05631 {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00449.WGS.N.hg38 C3L-00449 UCEC WGS blood_normal CPT0002770002 5a75740b-ad5b-4f29-8b9e-1d011f50aac7_gdc_realn.bam 118804355054 BAM harmonized CPTAC3 688ef886-6324-46d5-89ee-11be2c3c3b8b 607a412c98955474a9c9e3d47b33cbbb {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00449.WGS.T C3L-00449 UCEC WGS tumor CPT0007100009 CPT0007100009.WholeGenome.RP-1303.bam 73060765257 BAM submitted_aligned CPTAC3 08044ed5-cb84-4e26-a145-702633db7ba7 6047a6151dad8e619fbca70c75a9a616 {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.WGS.T.hg38 C3L-00449 UCEC WGS tumor CPT0007100009 73d8e268-db73-4fa5-b943-4e99a762e81a_gdc_realn.bam 103412720618 BAM harmonized CPTAC3 79b0a390-f6b2-4eb1-a905-90f69c0104e5 31466ceef7546ef51cefbbfa32aa1981 {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.WXS.N C3L-00449 UCEC WXS blood_normal CPT0002770002 CPT0002770002.WholeExome.RP-1303.bam 25720873823 BAM submitted_aligned CPTAC3 8e1f0839-24bd-4c64-b5e8-0293806b40d1 46a5d328754f1d422ead186970cbdd8e {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00449.WXS.N.hg38 C3L-00449 UCEC WXS blood_normal CPT0002770002 5a75740b-ad5b-4f29-8b9e-1d011f50aac7_gdc_realn.bam 35187133651 BAM harmonized CPTAC3 e8723283-d74f-456f-90e8-7a54b0d8abe2 90022be88200bd38ee0fcd4c78c135c0 {"aliquot_tag": "ALQ_ce73c360", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00449.WXS.T C3L-00449 UCEC WXS tumor CPT0007100009 CPT0007100009.WholeExome.RP-1303.bam 30908952821 BAM submitted_aligned CPTAC3 ca52d893-7198-48a9-ae84-3b1a48b4f9af 13ced0cb3902f362088dbb2895c1627c {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00449.WXS.T.hg38 C3L-00449 UCEC WXS tumor CPT0007100009 73d8e268-db73-4fa5-b943-4e99a762e81a_gdc_realn.bam 42170411863 BAM harmonized CPTAC3 497a5093-f4f0-4fbd-b869-77bec7018f5b 642f8808b27adf38d0387d8876db381b {"aliquot_tag": "ALQ_6fe00a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00452.MethArray.Green.Tbm C3L-00452 AML Methylation_Array tumor_bone_marrow CPT0018070002 202234380024_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 4b1c09cd-0bb9-4c37-89ab-4e0738ca93eb 4f1cea79195b7c600a7ded227914e1f5 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.MethArray.Red.Tbm C3L-00452 AML Methylation_Array tumor_bone_marrow CPT0018070002 202234380024_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 a27cf150-1ded-489e-9971-0d934c6679ae 9d048321c4c56d52e62c8a4e736cf2c3 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.miRNA-Seq.S25_L008_R1.Tbm C3L-00452 AML miRNA-Seq tumor_bone_marrow CPT0018040002 180724_UNC32-K00270_0106_BHWK3MBBXX_ATCACG_S25_L008_R1_001.unaln.bam 254108921 BAM S25_L008_R1 submitted_unaligned CPTAC3 2d23609d-8720-40fd-b7ae-670be8d711c2 52851784909a78a98a19bd92b645161d {"aliquot_tag": "ALQ_fc0cd6d8", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.miRNA-Seq.Tbm.hg38 C3L-00452 AML miRNA-Seq tumor_bone_marrow CPT0018040002 8d705e15-d3cc-4cd6-a738-7e446393c1bd_mirnaseq_gdc_realn.bam 267589800 BAM harmonized CPTAC3 1e7d9791-3b5e-4cc1-8590-ce666d8633e1 207387a83ce8d373b305a24c0ad91e1e {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.RNA-Seq.chimeric.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.chimeric.gdc_realn.bam 59155781 BAM chimeric harmonized CPTAC3 b4ccc9bd-fb70-4bcb-bb30-37bd1becfbce f5e3e72099d18c116e49cca47a51477f {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.RNA-Seq.genomic.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.genomic.gdc_realn.bam 9490961278 BAM genomic harmonized CPTAC3 255db370-3dec-4150-958c-84bb88ba10ae 79a2dfcdba8d4eda13d18a402cc478de {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.RNA-Seq.S18_L005_R1.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R1_001.fastq.gz 4094003394 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 e3bcf26f-ee7e-479e-b957-e5ade5eca769 06954934d1fe26bbebfb2e67ad38166b {"aliquot_tag": "ALQ_fc0cd6d8", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.RNA-Seq.S18_L005_R2.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R2_001.fastq.gz 4032209570 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 5505543b-e537-4d2a-b0f3-3eef15780673 eb0d2cce7bab9d5b272724cb8cb1f033 {"aliquot_tag": "ALQ_fc0cd6d8", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.RNA-Seq.transcriptome.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.transcriptome.gdc_realn.bam 9657092178 BAM transcriptome harmonized CPTAC3 bceafe6a-4d5b-4ab5-b7e7-bf7f84a3775f 82ee5df8beab9936babc3c8f58c6dc20 {"aliquot_tag": "ALQ_fc0cd6d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.WGS.Tbm C3L-00452 AML WGS tumor_bone_marrow CPT0018070002 CPT0018070002.WholeGenome.RP-1303.bam 58958754833 BAM submitted_aligned CPTAC3 44b514c5-97cb-4380-9e8e-80be4c0c6519 febf425e09ac752d3344a86e793c83cb {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.WGS.Tbm.hg38 C3L-00452 AML WGS tumor_bone_marrow CPT0018070002 c6810a58-cb12-4f26-9a07-0cba34cf62a8_wgs_gdc_realn.bam 86060336124 BAM harmonized CPTAC3 4b990fbb-c678-4006-b5ff-860c9e6fd6d0 5726e50aa44847e5ec8b635a6d831688 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.WXS.Tbm C3L-00452 AML WXS tumor_bone_marrow CPT0018070002 CPT0018070002.WholeExome.RP-1303.bam 53756994754 BAM submitted_aligned CPTAC3 9b012fcc-5cf8-47d6-9470-00a73d8cce4a b267ad0dc19a006916298049b3829aff {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00452.WXS.Tbm.hg38 C3L-00452 AML WXS tumor_bone_marrow CPT0018070002 c6810a58-cb12-4f26-9a07-0cba34cf62a8_wxs_gdc_realn.bam 74034518289 BAM harmonized CPTAC3 45ed52e8-d48d-40a1-a344-8a473fbdcfe9 752c667ce9efc5c8edeaab16eb85e835 {"aliquot_tag": "ALQ_bbacac08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.MethArray.Green.Tbm C3L-00453 AML Methylation_Array tumor_bone_marrow CPT0054620002 202234370093_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a5877906-8dac-46ca-845e-f8cd95e3dff9 9aae04f7225010c2503d61b3e400a235 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.MethArray.Red.Tbm C3L-00453 AML Methylation_Array tumor_bone_marrow CPT0054620002 202234370093_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3f216486-99cd-4f94-87b1-33d152f5ff37 2c49def6e5889d3c8494853c5a0af02f {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.miRNA-Seq.S31_L008_R1.Tbm C3L-00453 AML miRNA-Seq tumor_bone_marrow CPT0054580002 180724_UNC32-K00270_0106_BHWK3MBBXX_ACTTGA_S31_L008_R1_001.unaln.bam 267558881 BAM S31_L008_R1 submitted_unaligned CPTAC3 f9ad2dbe-0e23-48e0-9f2f-d3509131436e 5cc143dda4869191bf808352fbe1b490 {"aliquot_tag": "ALQ_2adbcee4", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.miRNA-Seq.Tbm.hg38 C3L-00453 AML miRNA-Seq tumor_bone_marrow CPT0054580002 97c43712-4905-4115-a4fa-d0094bd3ef95_mirnaseq_gdc_realn.bam 278902804 BAM harmonized CPTAC3 a365c8be-f1ea-4e39-b113-5742d1a9bc15 c440058fc797698efdd5fbfbf41a42ef {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.RNA-Seq.chimeric.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.chimeric.gdc_realn.bam 40627112 BAM chimeric harmonized CPTAC3 c394c92b-7574-4b0b-a43b-3d0b1dbc258d 01e0d940b1a9f7492e1cda2e14c42dce {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.RNA-Seq.genomic.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.genomic.gdc_realn.bam 7074959042 BAM genomic harmonized CPTAC3 daa5c985-518e-4067-85f6-a9e5b2303c68 c864bef975acc627c661c86b4d60fe7f {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.RNA-Seq.S15_L004_R1.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3513795167 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 cee5ec12-9d91-4a34-b9e0-82664a162d63 f8030ec35bfebf7354a69f6befc19760 {"aliquot_tag": "ALQ_2adbcee4", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.RNA-Seq.S15_L004_R2.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 3898658561 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 391e6f40-e618-47c5-a577-2f1c49aa7f67 5b46cc6847db94def23bab46dedcc029 {"aliquot_tag": "ALQ_2adbcee4", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.RNA-Seq.transcriptome.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.transcriptome.gdc_realn.bam 10050460210 BAM transcriptome harmonized CPTAC3 28efe605-7567-4f9b-9b6e-ebe12995bc5f 047f8aa92ec3ac940e3e25abe6c9c67c {"aliquot_tag": "ALQ_2adbcee4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.WGS.Nbc C3L-00453 AML WGS buccal_normal CPT0054690005 CPT0054690005.WholeGenome.RP-1303.bam 61651871560 BAM submitted_aligned CPTAC3 d58d2353-a50e-4e4f-8635-bc82cabcfd67 7fb23178fe08d18d9d4f9901044ea148 {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00453.WGS.Nbc.hg38 C3L-00453 AML WGS buccal_normal CPT0054690005 f98a5d79-749c-4429-89c1-9d3851f5bf83_wgs_gdc_realn.bam 93094661051 BAM harmonized CPTAC3 81c4a2f0-222a-44be-94be-54b1c8095f79 1247bc31d676a154e871d12226590e2b {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00453.WGS.Tbm C3L-00453 AML WGS tumor_bone_marrow CPT0054620002 CPT0054620002.WholeGenome.RP-1303.bam 60288249137 BAM submitted_aligned CPTAC3 0f0ba2c8-dff7-4237-849a-e6ad1a93594f e4a3f80a0f4e3248222e9ccf1e877382 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.WGS.Tbm.hg38 C3L-00453 AML WGS tumor_bone_marrow CPT0054620002 c5fd73ad-144a-458c-9f91-f3fcb39a0fd1_wgs_gdc_realn.bam 88716398405 BAM harmonized CPTAC3 71e80e61-93ae-47a3-8528-d9f0b5ef6d84 554a7c00ddcbaa4596d41f33109f9c02 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.WXS.Nbc C3L-00453 AML WXS buccal_normal CPT0054690005 CPT0054690005.WholeExome.RP-1303.bam 24108265758 BAM submitted_aligned CPTAC3 a478cec3-9529-46f2-acaa-c99ad73fa1fb 45e12c095f94f524888ea6cc86a269fe {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00453.WXS.Nbc.hg38 C3L-00453 AML WXS buccal_normal CPT0054690005 f98a5d79-749c-4429-89c1-9d3851f5bf83_wxs_gdc_realn.bam 33184485044 BAM harmonized CPTAC3 1eec226f-34bd-41d9-a5d4-d8c4f28f34eb 7cfdd4847f656fca3f31d22f3cc84af6 {"aliquot_tag": "ALQ_f4b0059", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00453.WXS.Tbm C3L-00453 AML WXS tumor_bone_marrow CPT0054620002 CPT0054620002.WholeExome.RP-1303.bam 44048025211 BAM submitted_aligned CPTAC3 700a015c-f8c9-4533-926f-8bc97a884705 7af66084868b45e0e89ba5f91ab6af56 {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00453.WXS.Tbm.hg38 C3L-00453 AML WXS tumor_bone_marrow CPT0054620002 c5fd73ad-144a-458c-9f91-f3fcb39a0fd1_wxs_gdc_realn.bam 59373871154 BAM harmonized CPTAC3 2aa6541b-fbe2-4ae6-abd1-02fe1691cb97 6d32387170a694afbb533f7c246c634e {"aliquot_tag": "ALQ_e6ffa4eb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.MethArray.Green.Tbm C3L-00455 AML Methylation_Array tumor_bone_marrow CPT0054500002 202176290105_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 381d2935-b36d-403f-825c-817f0f4dd344 1d435c328b5253203b32ebf05e0a258c {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.MethArray.Red.Tbm C3L-00455 AML Methylation_Array tumor_bone_marrow CPT0054500002 202176290105_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b35ecbd-b2e6-4e54-9a01-c38778c7de36 f7e103cccaf6b845b2893f37ddc77d08 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.miRNA-Seq.S26_L002_R1.Tbm C3L-00455 AML miRNA-Seq tumor_bone_marrow CPT0054530002 180924_UNC31-K00269_0154_AHWTMLBBXX_TCCCGA_S26_L002_R1_001.unaln.bam 215904033 BAM S26_L002_R1 submitted_unaligned CPTAC3 6fe85f9c-b40f-4c6e-bda0-9281bfedd113 33013e9f05c0551a002daf2fa3b8055f {"aliquot_tag": "ALQ_5d0bfff5", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.miRNA-Seq.Tbm.hg38 C3L-00455 AML miRNA-Seq tumor_bone_marrow CPT0054530002 f401a998-3c9a-43e0-98b3-cb4c6f71a0a8_mirnaseq_gdc_realn.bam 228472783 BAM harmonized CPTAC3 491dddaa-5b75-48ad-bdab-6f8868570129 1a0e68714c104303cb9be9e1a63fb5b9 {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.RNA-Seq.chimeric.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.chimeric.gdc_realn.bam 44533448 BAM chimeric harmonized CPTAC3 4e1a6357-16a0-4eb2-8600-a35f05e243f8 cd86bb066f2456c678dd553f44e645f2 {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.RNA-Seq.genomic.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.genomic.gdc_realn.bam 11108676516 BAM genomic harmonized CPTAC3 dfdb4164-fe88-4631-8073-e68ee040fdc9 d55c9f0ecef45e1659295e9e8b2acce3 {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.RNA-Seq.S14_L004_R1.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4469739392 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 f0783087-c82a-4b61-aa63-73e600fc9795 8567b031328d5f0581e06f78647d7ff8 {"aliquot_tag": "ALQ_5d0bfff5", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.RNA-Seq.S14_L004_R2.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 4899302775 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 755b832b-3ed5-413b-b62b-8dd8ed6079b7 72f1e5fc9528c1dde7eed27dc107f61d {"aliquot_tag": "ALQ_5d0bfff5", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.RNA-Seq.transcriptome.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.transcriptome.gdc_realn.bam 12418844716 BAM transcriptome harmonized CPTAC3 246e55bd-01f6-4955-ab9c-cde5673b0177 d138c9801546d93ba667cfaf0a15587b {"aliquot_tag": "ALQ_5d0bfff5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.WGS.Nbc C3L-00455 AML WGS buccal_normal CPT0054550002 CPT0054550002.WholeGenome.RP-1303.bam 73069954598 BAM submitted_aligned CPTAC3 7146aec8-2c3d-43cc-891d-68dd6a9e2f16 339111a6162fa7f200c0f15375f662dd {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00455.WGS.Nbc.hg38 C3L-00455 AML WGS buccal_normal CPT0054550002 53b178ad-5458-411b-9495-2e35e186f2a3_gdc_realn.bam 110303377443 BAM harmonized CPTAC3 1210073b-32e5-4acf-a539-58eceab95e18 6bbfc03e5a9f2813dca66291460db5de {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00455.WGS.Tbm C3L-00455 AML WGS tumor_bone_marrow CPT0054500002 CPT0054500002.WholeGenome.RP-1303.bam 93285274251 BAM submitted_aligned CPTAC3 eeb5756a-d421-46bc-8f58-1f92a835e2c3 0223411553f70db90bc279c19d0c1207 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.WGS.Tbm.hg38 C3L-00455 AML WGS tumor_bone_marrow CPT0054500002 138acbf2-23a0-4723-ae5a-4389c719ea14_gdc_realn.bam 145149697232 BAM harmonized CPTAC3 2d456244-3a1d-4fe1-965b-91b3f50e85fb 0b574865a2b400233a9fdbd6cd5bb4f3 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.WXS.Nbc C3L-00455 AML WXS buccal_normal CPT0054550002 CPT0054550002.WholeExome.RP-1303.bam 22274428959 BAM submitted_aligned CPTAC3 594edd06-70da-41aa-aadf-9b58e365e9f4 71956c7bd2a5684153a2346987351bfb {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00455.WXS.Nbc.hg38 C3L-00455 AML WXS buccal_normal CPT0054550002 53b178ad-5458-411b-9495-2e35e186f2a3_gdc_realn.bam 30922805017 BAM harmonized CPTAC3 06d638fc-772d-4333-83ec-0251b848de46 c4da383cec6f26264dfecec0b9d45d12 {"aliquot_tag": "ALQ_d24b0a55", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00455.WXS.Tbm C3L-00455 AML WXS tumor_bone_marrow CPT0054500002 CPT0054500002.WholeExome.RP-1303.bam 34208032345 BAM submitted_aligned CPTAC3 a78bb699-0b97-4ca6-a2c4-ddca43bc5dda 03d6a175e64693dc4b3410b0116153b4 {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00455.WXS.Tbm.hg38 C3L-00455 AML WXS tumor_bone_marrow CPT0054500002 138acbf2-23a0-4723-ae5a-4389c719ea14_gdc_realn.bam 46435753511 BAM harmonized CPTAC3 847fcbbd-e8a4-464a-8e8f-3e65426a8afe 95609cf5a4bfd93bd196a4088170f9ab {"aliquot_tag": "ALQ_1aab8525", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.ADD_8a71df48.WGS.Nbc C3L-00457 AML WGS buccal_normal CPT0054870005 CPT0054870005.WholeGenome.RP-1303.bam 69698611334 BAM submitted_aligned CPTAC3 a0f47869-5aa2-4da5-9de2-acab2d008fc8 f21e42febb1f7c1d4e38b14300683fae {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00457.ADD_8a71df48.WGS.Nbc.hg38 C3L-00457 AML WGS buccal_normal CPT0054870005 4cfbc7ba-aeed-40f9-bd9e-cb7bdc0f1eea_wgs_gdc_realn.bam 102810790174 BAM harmonized CPTAC3 4786fe3f-0a54-4f8d-9a37-30116422748d b864745f49c32720ce91774a048ea93c {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00457.ADD_8a71df48.WXS.Nbc C3L-00457 AML WXS buccal_normal CPT0054870005 CPT0054870005.WholeExome.RP-1303.bam 27023691727 BAM submitted_aligned CPTAC3 6ffd72f5-aa4a-44c0-a313-d0aa83e41f7a dc44fa1deb68d66fd4f75eb1d219d1ab {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00457.ADD_8a71df48.WXS.Nbc.hg38 C3L-00457 AML WXS buccal_normal CPT0054870005 4cfbc7ba-aeed-40f9-bd9e-cb7bdc0f1eea_wxs_gdc_realn.bam 36356538540 BAM harmonized CPTAC3 f7352fa2-f8b2-48ff-8e77-a1850206d093 087f9633abb8e9eb8c16e934447631bf {"aliquot_tag": "ADD_8a71df48", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00457.MethArray.Green.Tbm C3L-00457 AML Methylation_Array tumor_bone_marrow CPT0054850002 202234380064_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e745772c-acd6-4886-864e-9c4522e97637 9b6789a8a5d985eb94cf4eba6c36b898 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.MethArray.Red.Tbm C3L-00457 AML Methylation_Array tumor_bone_marrow CPT0054850002 202234380064_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 abc0671f-cdbd-42fd-a021-468d4122a939 ab0d11b8e8a5a3d17ab13a110c61d7e3 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.miRNA-Seq.S23_L006_R1.Tbm C3L-00457 AML miRNA-Seq tumor_bone_marrow CPT0054830002 180828_UNC32-K00270_0112_AHWTLNBBXX_ATCACG_S23_L006_R1_001.unaln.bam 224690054 BAM S23_L006_R1 submitted_unaligned CPTAC3 18da77a0-292f-4e78-9b17-b9eb7afdfe09 0c9d3b515e4fbe840a32de1d2b70d16b {"aliquot_tag": "ALQ_e195ec2b", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.miRNA-Seq.Tbm.hg38 C3L-00457 AML miRNA-Seq tumor_bone_marrow CPT0054830002 7054e982-11d1-40cc-8a0f-bfd8dbcb2405_mirnaseq_gdc_realn.bam 241966461 BAM harmonized CPTAC3 deeecc20-3528-4881-bf5f-47a8bd845b20 01b36ca3f31d210a35d0c89b8d50fbc7 {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.RNA-Seq.chimeric.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.chimeric.gdc_realn.bam 50298528 BAM chimeric harmonized CPTAC3 fb91945d-a6e3-4c54-a96d-a949573e233c 80af84ad865ba479c62db74747e35718 {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.RNA-Seq.genomic.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.genomic.gdc_realn.bam 10861561464 BAM genomic harmonized CPTAC3 d96884b3-5acb-431a-8691-eea2f024e3e7 6b97c5361a7aa78b36762d01ceb7b353 {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.RNA-Seq.S5_L002_R1.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R1_001.fastq.gz 5237946882 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 7fbb57ea-ce5f-460f-926c-bcd3c497d48e a33def0b3a04518a9c29bfa98ba43292 {"aliquot_tag": "ALQ_e195ec2b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.RNA-Seq.S5_L002_R2.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R2_001.fastq.gz 5266271358 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 c2c12512-899d-403d-8eee-2bb9b031489b 7d0266cc7ee64672f0a6e36841e7aaa7 {"aliquot_tag": "ALQ_e195ec2b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.RNA-Seq.transcriptome.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.transcriptome.gdc_realn.bam 14406441392 BAM transcriptome harmonized CPTAC3 61e915b2-53d0-4fda-9358-33f963c1a6e0 ab27bdc887ff9d937b154ef90e9bf48f {"aliquot_tag": "ALQ_e195ec2b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.WGS.Tbm C3L-00457 AML WGS tumor_bone_marrow CPT0054850002 CPT0054850002.WholeGenome.RP-1303.bam 56262061965 BAM submitted_aligned CPTAC3 86f2966f-8004-4a17-a5c8-acbba5e47bd7 67ce2d33cbc3af62d8c6439564023da8 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.WGS.Tbm.hg38 C3L-00457 AML WGS tumor_bone_marrow CPT0054850002 6a3c7519-742a-4459-9abb-5c9a43c8d3f8_wgs_gdc_realn.bam 82332121109 BAM harmonized CPTAC3 34d5947e-1b54-49b7-a505-93fe5511f669 671b6e89cb2d352ea4947cb831476c54 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.WXS.Tbm C3L-00457 AML WXS tumor_bone_marrow CPT0054850002 CPT0054850002.WholeExome.RP-1303.bam 34186082977 BAM submitted_aligned CPTAC3 f5d8c6aa-ebab-4d81-89ec-82b9621b1d35 288540238740efeb4114faba2b8b6979 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00457.WXS.Tbm.hg38 C3L-00457 AML WXS tumor_bone_marrow CPT0054850002 6a3c7519-742a-4459-9abb-5c9a43c8d3f8_wxs_gdc_realn.bam 46247539036 BAM harmonized CPTAC3 f92e948a-b6de-4b65-8740-32a0736bb939 639a7e7f7658e71d5219baa30e341067 {"aliquot_tag": "ALQ_6ed5198b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.MethArray.Green.Tbm C3L-00458 AML Methylation_Array tumor_bone_marrow CPT0054750002 202176290087_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 10e504d1-a2ba-447b-8ddd-7b3c8149ebbe 3619538e1cfd65c627b6e683c3dda8ae {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.MethArray.Red.Tbm C3L-00458 AML Methylation_Array tumor_bone_marrow CPT0054750002 202176290087_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 696ecd16-72eb-4a38-b07f-5db23b46500d 8fde17be218c4de99f61f02f33cfd653 {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.miRNA-Seq.S7_L001_R1.Tbm C3L-00458 AML miRNA-Seq tumor_bone_marrow CPT0054770002 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L001_R1_001.unaln.bam 151314497 BAM S7_L001_R1 submitted_unaligned CPTAC3 af0a24c9-59f1-4096-b9c8-33304ed5c4ff 55468369d6ffa5d5aa1bd5b35c56b44b {"aliquot_tag": "ALQ_e543f83e", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.miRNA-Seq.Tbm.hg38 C3L-00458 AML miRNA-Seq tumor_bone_marrow CPT0054770002 adb5deb5-63a4-4682-800f-00b930679fa2_mirnaseq_gdc_realn.bam 170858505 BAM harmonized CPTAC3 af7ec801-2b30-43fb-b8cd-d9bf7ce7997b 1c7335f481b089ba197d29b755497017 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.RNA-Seq.chimeric.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.chimeric.gdc_realn.bam 78541356 BAM chimeric harmonized CPTAC3 3c9b3fbd-b06e-4d3f-a6fa-15f2695ebeb0 3d2ebed2d01b78ecd59e29a7729d3711 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.RNA-Seq.genomic.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.genomic.gdc_realn.bam 8644201287 BAM genomic harmonized CPTAC3 b8e034fb-56b2-44da-b961-587335bcf501 e2971592687f0955d7bff9ba33fef1e7 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.RNA-Seq.S21_L006_R1.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3829956645 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 b2975393-27f8-41e8-a678-07b90a3911b2 5d25526bb5ac03f6e70d11a607e7a050 {"aliquot_tag": "ALQ_e543f83e", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.RNA-Seq.S21_L006_R2.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4180610952 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 62eeaa76-736b-45c8-892d-67587a27288b 5ef5c0b17f1031291ce2bc21033649ee {"aliquot_tag": "ALQ_e543f83e", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.RNA-Seq.transcriptome.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.transcriptome.gdc_realn.bam 8045728661 BAM transcriptome harmonized CPTAC3 d8314fb8-1523-4c4e-adc1-303093441281 e74ce001081c125ff3f10ad794289691 {"aliquot_tag": "ALQ_e543f83e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.WGS.Nbc C3L-00458 AML WGS buccal_normal CPT0054800005 CPT0054800005.WholeGenome.RP-1303.bam 77742196684 BAM submitted_aligned CPTAC3 7f076ba7-def6-48f5-ab33-526f4b6d709f d09c92df5c2ec64ab3ba77db3d09ca34 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00458.WGS.Nbc.hg38 C3L-00458 AML WGS buccal_normal CPT0054800005 06571337-83f2-4bf5-bf4b-bf2bcf13aa60_gdc_realn.bam 121033703970 BAM harmonized CPTAC3 32240eef-9d20-4d0d-b2c1-05600a4784d7 0836b2c48812bc69535f5c7afb6a40e1 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00458.WGS.Tbm C3L-00458 AML WGS tumor_bone_marrow CPT0054750002 CPT0054750002.WholeGenome.RP-1303.bam 64315378512 BAM submitted_aligned CPTAC3 3be05a64-ff2e-45d7-9140-43ee8005d06e d7e036189048e26a80b2606e9290bf48 {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.WGS.Tbm.hg38 C3L-00458 AML WGS tumor_bone_marrow CPT0054750002 830679b3-3556-4351-9513-7f7f085d17c0_gdc_realn.bam 95724539832 BAM harmonized CPTAC3 32532239-85f8-42a4-8fa8-d7c513bc436a c1b56d992c54559b60200700c0324d1a {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.WXS.Nbc C3L-00458 AML WXS buccal_normal CPT0054800005 CPT0054800005.WholeExome.RP-1303.bam 26365505169 BAM submitted_aligned CPTAC3 844e0064-8820-46e0-9d01-299c738de57f c5293c5dee827a11375e98529a0f0bf0 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00458.WXS.Nbc.hg38 C3L-00458 AML WXS buccal_normal CPT0054800005 06571337-83f2-4bf5-bf4b-bf2bcf13aa60_gdc_realn.bam 36296893894 BAM harmonized CPTAC3 035bacd5-f005-46d0-a03e-5d6005892ba0 a0dbe3319ae50a5b05579cb5f135fc82 {"aliquot_tag": "ALQ_38510358", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00458.WXS.Tbm C3L-00458 AML WXS tumor_bone_marrow CPT0054750002 CPT0054750002.WholeExome.RP-1303.bam 33538956445 BAM submitted_aligned CPTAC3 80d77949-dea7-4471-9176-b20fc3c7b51f 673923190dda89872e5393886db7c46c {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00458.WXS.Tbm.hg38 C3L-00458 AML WXS tumor_bone_marrow CPT0054750002 830679b3-3556-4351-9513-7f7f085d17c0_gdc_realn.bam 45726066126 BAM harmonized CPTAC3 62a85f23-7204-40ea-af37-b5a6866764b8 2c443617becb7cbf3d1401c112858bf4 {"aliquot_tag": "ALQ_9f83ab5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.MethArray.Green.Tbm C3L-00459 AML Methylation_Array tumor_bone_marrow CPT0054960002 202234370079_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5b295a5f-f6b4-4706-b8a3-f97e0f4e1d31 65c6c9fe33b30093d7fee0601559c2d5 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.MethArray.Red.Tbm C3L-00459 AML Methylation_Array tumor_bone_marrow CPT0054960002 202234370079_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 169904d8-6b75-4e75-a9f7-4a0bec4ad37a 3b04660d626db0a67a808aa85f918736 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.miRNA-Seq.S45_L008_R1.Tbm C3L-00459 AML miRNA-Seq tumor_bone_marrow CPT0054940002 180724_UNC32-K00270_0106_BHWK3MBBXX_CGATGT_S45_L008_R1_001.unaln.bam 254001543 BAM S45_L008_R1 submitted_unaligned CPTAC3 c3e98187-c19f-49e6-8f4c-eaff3a00c8f7 5b4857e25762095c2dd0c214c973c0bf {"aliquot_tag": "ALQ_98e9e39e", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.miRNA-Seq.Tbm.hg38 C3L-00459 AML miRNA-Seq tumor_bone_marrow CPT0054940002 434b0798-2ca1-4fa1-9e11-8c37cb399965_mirnaseq_gdc_realn.bam 264738806 BAM harmonized CPTAC3 ef2e3342-ee47-4dfe-9368-59ad16d8dce1 6a4d1ae8bc85083646625f9346a76249 {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.RNA-Seq.chimeric.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.chimeric.gdc_realn.bam 34704169 BAM chimeric harmonized CPTAC3 a461f574-b1be-4a77-b6ad-8b7b8f86a34d c896782e96045ef5ac005a1445702d3d {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.RNA-Seq.genomic.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.genomic.gdc_realn.bam 12522127592 BAM genomic harmonized CPTAC3 1b8eee01-1f5b-4e21-9dc8-197a7dbc041b 7bc3cd188e2766e0569e32e03b0816e4 {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.RNA-Seq.S17_L005_R1.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R1_001.fastq.gz 3836207363 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 61333545-45a2-4cfd-b5c8-b95fbbbb875b 6d8309bc5abe4d5e815c68715007d420 {"aliquot_tag": "ALQ_98e9e39e", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.RNA-Seq.S17_L005_R2.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R2_001.fastq.gz 4242868726 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 22d6579a-2e1c-4606-b175-e79e8b4d96f6 f4a8a445a82e329d96f9e73023262d3c {"aliquot_tag": "ALQ_98e9e39e", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.RNA-Seq.transcriptome.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.transcriptome.gdc_realn.bam 10347940267 BAM transcriptome harmonized CPTAC3 b909f2c6-a858-43e5-9005-b5b1b19d6236 cc0cde24afa50abcb9ee2e83400dfdce {"aliquot_tag": "ALQ_98e9e39e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.WGS.Nbc C3L-00459 AML WGS buccal_normal CPT0054990002 CPT0054990002.WholeGenome.RP-1303.bam 56985933744 BAM submitted_aligned CPTAC3 6536db8c-f6e6-480b-817e-4407282925a0 f0f47d316ec63e392e984ca6a5ccada9 {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00459.WGS.Nbc.hg38 C3L-00459 AML WGS buccal_normal CPT0054990002 d7b806ba-b895-44e0-bbad-29203621615f_wgs_gdc_realn.bam 84608866721 BAM harmonized CPTAC3 8e608d7f-19fc-4ab3-86fa-61e96ce384bb 1ee0ef5b2c29f86a6fa8a16bfa138c1e {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00459.WGS.Tbm C3L-00459 AML WGS tumor_bone_marrow CPT0054960002 CPT0054960002.WholeGenome.RP-1303.bam 65478911353 BAM submitted_aligned CPTAC3 fd02a2ed-221b-4fcd-b036-87dc04b552fc 7ae9c294b63086f4e143908eecda4365 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.WGS.Tbm.hg38 C3L-00459 AML WGS tumor_bone_marrow CPT0054960002 a8ba6df1-a55b-44d5-b241-f8acaed07831_wgs_gdc_realn.bam 97208369470 BAM harmonized CPTAC3 09c32a71-39bd-49ab-8394-fdce4d6d0dd6 a6419e11839c5713436ede723fa28f8d {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.WXS.Nbc C3L-00459 AML WXS buccal_normal CPT0054990002 CPT0054990002.WholeExome.RP-1303.bam 45738513317 BAM submitted_aligned CPTAC3 43e5938e-8ee3-4f7c-96fe-ffdd50c387b6 54be27be5551548a6af0ea46867f78c1 {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00459.WXS.Nbc.hg38 C3L-00459 AML WXS buccal_normal CPT0054990002 d7b806ba-b895-44e0-bbad-29203621615f_wxs_gdc_realn.bam 62012980775 BAM harmonized CPTAC3 d2fe6d7c-2b20-4742-bb0e-3244cb99dbdc 66d767bc0ad2ae2eda60e9974f8203a3 {"aliquot_tag": "ALQ_6079272f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00459.WXS.Tbm C3L-00459 AML WXS tumor_bone_marrow CPT0054960002 CPT0054960002.WholeExome.RP-1303.bam 27850807579 BAM submitted_aligned CPTAC3 9212daf2-9f5d-4b18-a6ee-e895f905e365 c10159312032412341bad7001d45af39 {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00459.WXS.Tbm.hg38 C3L-00459 AML WXS tumor_bone_marrow CPT0054960002 a8ba6df1-a55b-44d5-b241-f8acaed07831_wxs_gdc_realn.bam 38411829896 BAM harmonized CPTAC3 d9cb9b36-252f-4f96-ba42-52a7cd0368eb 7a752e5ab8bf5a13b74f8a61aca5553c {"aliquot_tag": "ALQ_e229b0fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.MethArray.Green.Tbm C3L-00460 AML Methylation_Array tumor_bone_marrow CPT0054410002 202184900148_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 21ffe10e-291f-4e80-ac30-ec026105bfb8 708e8c7739cf95ca20c948ee75c44e1a {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.MethArray.Red.Tbm C3L-00460 AML Methylation_Array tumor_bone_marrow CPT0054410002 202184900148_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 646990a2-b29f-4911-a566-8dd143dea98b 37886503c963d0a6471c57d69c836ce2 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.miRNA-Seq.S21_L005_R1.Tbm C3L-00460 AML miRNA-Seq tumor_bone_marrow CPT0054420002 181119_UNC31-K00269_0165_AH27WCBBXY_TCATTC_S21_L005_R1_001.unaln.bam 180642004 BAM S21_L005_R1 submitted_unaligned CPTAC3 89695c8a-380c-423f-9abe-d9e4b3090f20 2702b93644d437ba3c0bbfb3934bae9b {"aliquot_tag": "ALQ_ab3705e0", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.miRNA-Seq.Tbm.hg38 C3L-00460 AML miRNA-Seq tumor_bone_marrow CPT0054420002 36ad3608-0b85-42d9-af68-65a437632a2f_mirnaseq_gdc_realn.bam 189740401 BAM harmonized CPTAC3 1ddaacb8-0ded-41c1-93f5-d5070a9f6984 447c4be6cb269a1e8b418aba1fc9baac {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.RNA-Seq.chimeric.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.chimeric.gdc_realn.bam 43407353 BAM chimeric harmonized CPTAC3 0d81ad10-8566-4031-a647-f5b6b2338a31 1407ccfced583853746d73e4955bb679 {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.RNA-Seq.genomic.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.genomic.gdc_realn.bam 9099967971 BAM genomic harmonized CPTAC3 b77f512e-c30a-453d-a900-8a7d2a94a45c b67cf63cc5ec9e51e27727745675ac6a {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.RNA-Seq.S7_L007_R1.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3602480988 FASTQ S7_L007_R1 submitted_unaligned CPTAC3 d5771179-7a98-4d85-aea4-eba182579f7f 27d1a72deef34885cf2594fec2aa37dd {"aliquot_tag": "ALQ_ab3705e0", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.RNA-Seq.S7_L007_R2.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3932864558 FASTQ S7_L007_R2 submitted_unaligned CPTAC3 dad7c54b-cfc7-44c4-887c-9804c31dbb37 071c5f4c748ec82aad8133fa91446e77 {"aliquot_tag": "ALQ_ab3705e0", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.RNA-Seq.transcriptome.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.transcriptome.gdc_realn.bam 8799287004 BAM transcriptome harmonized CPTAC3 6d9a5057-eaa5-44f2-9a5d-5eb66c7fefb0 32e30014824a5e8583a9567eaf19e49e {"aliquot_tag": "ALQ_ab3705e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.WGS.Nbc C3L-00460 AML WGS buccal_normal CPT0054450005 CPT0054450005.WholeGenome.RP-1303.bam 90462971647 BAM submitted_aligned CPTAC3 b9909725-552a-4ce8-a7a1-7f395d1b490a a3203c6819b6f7629af112db2f5eb353 {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00460.WGS.Nbc.hg38 C3L-00460 AML WGS buccal_normal CPT0054450005 36a133d1-3595-458b-bee7-074e8fde8f1a_gdc_realn.bam 145024505936 BAM harmonized CPTAC3 51d9eed2-d9fc-44cd-9bc3-dbe4a78c417e 89007bb4b0a423c96ca68a3ea4f2361e {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00460.WGS.Tbm C3L-00460 AML WGS tumor_bone_marrow CPT0054410002 CPT0054410002.WholeGenome.RP-1303.bam 62271791506 BAM submitted_aligned CPTAC3 d6b01114-9ea3-43d5-abad-09ee9ad8b4c7 72d79e7eb3f8f56423b00b76930bf6b6 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.WGS.Tbm.hg38 C3L-00460 AML WGS tumor_bone_marrow CPT0054410002 0b2f88a5-a90f-4487-b0fc-6c0a7ce74213_gdc_realn.bam 92646067441 BAM harmonized CPTAC3 fc54e75e-cafa-4100-90ee-f3aa654040dc e58f6d73d86b2b2c7bbdf96d19ba1509 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.WXS.Nbc C3L-00460 AML WXS buccal_normal CPT0054450005 CPT0054450005.WholeExome.RP-1303.bam 34875166864 BAM submitted_aligned CPTAC3 e0fcb8e7-3154-44c2-99b6-0b20478c9928 a9e0081586da48605c2b9dc4e730a090 {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00460.WXS.Nbc.hg38 C3L-00460 AML WXS buccal_normal CPT0054450005 36a133d1-3595-458b-bee7-074e8fde8f1a_gdc_realn.bam 47593333941 BAM harmonized CPTAC3 d4f13b45-e7dc-4e8e-bd9b-957ebdd22dbb 8d6885a1060abc056b6403e3617f73fb {"aliquot_tag": "ALQ_87734c53", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00460.WXS.Tbm C3L-00460 AML WXS tumor_bone_marrow CPT0054410002 CPT0054410002.WholeExome.RP-1303.bam 44072402866 BAM submitted_aligned CPTAC3 5b3ea394-6a70-4b57-8106-efe941084b64 9337b2d8ee404cef071ac7421b34b4a8 {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00460.WXS.Tbm.hg38 C3L-00460 AML WXS tumor_bone_marrow CPT0054410002 0b2f88a5-a90f-4487-b0fc-6c0a7ce74213_gdc_realn.bam 60125770663 BAM harmonized CPTAC3 3eaa6c75-3173-4349-8bbf-7c0a75ddf28e 7772dc7dd3831bad1813ab954d35e1cd {"aliquot_tag": "ALQ_ec977f30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.ADD_5296f39b.WGS.Nbc C3L-00461 AML WGS buccal_normal CPT0054300005 CPT0054300005.WholeGenome.RP-1303.bam 66376106285 BAM submitted_aligned CPTAC3 36c2788d-a5c2-49fb-a0d4-2f16d55df5a5 8bf4427d1e15a067bea2419377289ea8 {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00461.ADD_5296f39b.WGS.Nbc.hg38 C3L-00461 AML WGS buccal_normal CPT0054300005 576f9144-e4c0-4138-8b3c-a0e9dc35b87b_wgs_gdc_realn.bam 107116441783 BAM harmonized CPTAC3 fd05b6b1-0ac6-4bf9-8489-4a6590c46cb5 a97dd43c0b926d9009f4fc4847b52071 {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00461.ADD_5296f39b.WXS.Nbc C3L-00461 AML WXS buccal_normal CPT0054300005 CPT0054300005.WholeExome.RP-1303.bam 42192603154 BAM submitted_aligned CPTAC3 574c9ffc-0c42-45f6-98b9-0f7555d0eba9 6b494fc6bd3a8dfcf3e9195b95d1f65b {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00461.ADD_5296f39b.WXS.Nbc.hg38 C3L-00461 AML WXS buccal_normal CPT0054300005 576f9144-e4c0-4138-8b3c-a0e9dc35b87b_wxs_gdc_realn.bam 57883503780 BAM harmonized CPTAC3 bc5676e8-5b55-4959-b3e1-ed55610fd3f7 6eac084253a115cb998030053ea7d715 {"aliquot_tag": "ADD_5296f39b", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00461.MethArray.Green.Tbm C3L-00461 AML Methylation_Array tumor_bone_marrow CPT0054280002 202234380017_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b0116221-69db-4d05-a928-c63be9a015b2 ccdfd82806c2d7d8e9203145680aa332 {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.MethArray.Red.Tbm C3L-00461 AML Methylation_Array tumor_bone_marrow CPT0054280002 202234380017_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 accde596-435d-4897-bc37-00d41910308c 393a61d318e18c0046b7a44824f921dc {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.miRNA-Seq.S23_L007_R1.Tbm C3L-00461 AML miRNA-Seq tumor_bone_marrow CPT0018430002 180724_UNC32-K00270_0106_BHWK3MBBXX_TCGGCA_S23_L007_R1_001.unaln.bam 216191451 BAM S23_L007_R1 submitted_unaligned CPTAC3 c31cc2f3-2aca-4e22-9684-01717cfef908 e149c178af8ca7887393e9bdb2348f5e {"aliquot_tag": "ALQ_d5bd48de", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.miRNA-Seq.Tbm.hg38 C3L-00461 AML miRNA-Seq tumor_bone_marrow CPT0018430002 ed2d3dba-77a9-4063-9210-7ccd3bd58c09_mirnaseq_gdc_realn.bam 224008004 BAM harmonized CPTAC3 e3d80b94-530b-479b-8381-b1bea3569618 874ed830aeed3bedde5eb8084370c980 {"aliquot_tag": "ALQ_d5bd48de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.WGS.Tbm C3L-00461 AML WGS tumor_bone_marrow CPT0054280002 CPT0054280002.WholeGenome.RP-1303.bam 67791828203 BAM submitted_aligned CPTAC3 059b3518-b86e-447c-8af6-4217dbdf9462 409b31fafa0e434d9b639912550ba8ca {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.WGS.Tbm.hg38 C3L-00461 AML WGS tumor_bone_marrow CPT0054280002 b29cabaf-9072-4b83-ac90-f8507e088796_wgs_gdc_realn.bam 99882759725 BAM harmonized CPTAC3 db50286b-5a53-4a87-90a5-d4d825b89908 bde4180f68d04b7c54762d8ffacebb5b {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.WXS.Tbm C3L-00461 AML WXS tumor_bone_marrow CPT0054280002 CPT0054280002.WholeExome.RP-1303.bam 32968059012 BAM submitted_aligned CPTAC3 e5172578-a4bf-4d8c-ad2c-7138e373ca00 adad845b22cdb0fa1ebd4a0795833edb {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00461.WXS.Tbm.hg38 C3L-00461 AML WXS tumor_bone_marrow CPT0054280002 b29cabaf-9072-4b83-ac90-f8507e088796_wxs_gdc_realn.bam 44943072114 BAM harmonized CPTAC3 6e0d1eac-125f-4681-b45d-726b67b3bce2 1e88739ee7e6495eccee4f6122942f91 {"aliquot_tag": "ALQ_37defe5c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.MethArray.Green.Tbm C3L-00465 AML Methylation_Array tumor_bone_marrow CPT0055020002 202178770045_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d09228fb-fceb-43c7-a773-5e31c0b61b85 20f4f9be41897fbf933cc89ce7190956 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.MethArray.Red.Tbm C3L-00465 AML Methylation_Array tumor_bone_marrow CPT0055020002 202178770045_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 46fc25ef-fec8-4b16-bb7d-ee312af388a8 779108c49bbeb2792832895f633470d6 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.miRNA-Seq.S36_L004_R1.Tbm C3L-00465 AML miRNA-Seq tumor_bone_marrow CPT0055050002 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L004_R1_001.unaln.bam 235671604 BAM S36_L004_R1 submitted_unaligned CPTAC3 d632cbcd-9f6c-46ab-b1ba-5b1640d46cf7 a6f04b061b4306f41fd717e38f0760ff {"aliquot_tag": "ALQ_24f19052", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.miRNA-Seq.Tbm.hg38 C3L-00465 AML miRNA-Seq tumor_bone_marrow CPT0055050002 ff44f7dc-b87c-4bdc-b53f-6504dfea6e27_mirnaseq_gdc_realn.bam 263974054 BAM harmonized CPTAC3 8d2c7576-d2dc-42f2-af38-ed35aedec990 7d3767d98aceeae461f419d02ef73af6 {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.RNA-Seq.chimeric.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.chimeric.gdc_realn.bam 55156691 BAM chimeric harmonized CPTAC3 9060661b-2d53-405e-bf85-e86b9b818d0f b15e8fc5beb50c97c80632469be90d59 {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.RNA-Seq.genomic.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.genomic.gdc_realn.bam 9886467188 BAM genomic harmonized CPTAC3 493b0c87-f3f4-47d2-a001-68e4714ba78e b02c677c740bd8cffa6bddc71618173c {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.RNA-Seq.S3_L007_R1.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R1_001.fastq.gz 3935574971 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 c8af9b99-a55b-454f-a8fe-1804577dc952 378ffb032b41bc82dffac57022c5a364 {"aliquot_tag": "ALQ_24f19052", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.RNA-Seq.S3_L007_R2.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R2_001.fastq.gz 4372469194 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 9ed627c4-2979-4ec1-80c6-b42bf6b79455 924609ab82ee0007af3ea966a6ce9ee0 {"aliquot_tag": "ALQ_24f19052", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.RNA-Seq.transcriptome.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.transcriptome.gdc_realn.bam 8917954549 BAM transcriptome harmonized CPTAC3 fe495860-df5c-4714-9af8-0ca843a63c23 b37beead8fd7b088cabbc1e2a30c3360 {"aliquot_tag": "ALQ_24f19052", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.WGS.Nbc C3L-00465 AML WGS buccal_normal CPT0055070005 CPT0055070005.WholeGenome.RP-1303.bam 82399325119 BAM submitted_aligned CPTAC3 2afc1b9d-df1e-4edf-9ae6-7a7810fa37e3 e93923f75c962db5e31423a7282bfd4d {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00465.WGS.Nbc.hg38 C3L-00465 AML WGS buccal_normal CPT0055070005 9abef38d-b25c-45ce-aafd-86137db0e665_gdc_realn.bam 123716099969 BAM harmonized CPTAC3 888bd4f0-4d76-40f5-be2b-30f4a3f60e30 9f0874cd903a23e0ad5537115dc64a65 {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00465.WGS.Tbm C3L-00465 AML WGS tumor_bone_marrow CPT0055020002 CPT0055020002.WholeGenome.RP-1303.bam 76742860275 BAM submitted_aligned CPTAC3 10135270-7616-4c7b-9ea0-111b8faccbb5 4837281ecd0d6ef7c86c573386ce87a6 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.WGS.Tbm.hg38 C3L-00465 AML WGS tumor_bone_marrow CPT0055020002 bffe3110-5cfa-4f93-aae6-4b6300a289ac_gdc_realn.bam 119753775158 BAM harmonized CPTAC3 895e1970-8cb8-4ee6-a9da-666945f7527f b6323d2bc2ebfe362009e8c65392bac4 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.WXS.Nbc C3L-00465 AML WXS buccal_normal CPT0055070005 CPT0055070005.WholeExome.RP-1303.bam 32479979357 BAM submitted_aligned CPTAC3 816e5258-d064-487c-b5b0-44313d962384 9f512833352df9f18ff981894f09cc55 {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00465.WXS.Nbc.hg38 C3L-00465 AML WXS buccal_normal CPT0055070005 9abef38d-b25c-45ce-aafd-86137db0e665_gdc_realn.bam 44175527892 BAM harmonized CPTAC3 c01f4ba5-1030-49c0-902d-fec56a504d15 0321a8ef48472290d451550c597bedcd {"aliquot_tag": "ALQ_c0555691", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00465.WXS.Tbm C3L-00465 AML WXS tumor_bone_marrow CPT0055020002 CPT0055020002.WholeExome.RP-1303.bam 33458872634 BAM submitted_aligned CPTAC3 713d72e0-5510-4708-b676-6dcb0ee17d3e 684b708f2f5dfe95cdf2c782e96a4672 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00465.WXS.Tbm.hg38 C3L-00465 AML WXS tumor_bone_marrow CPT0055020002 bffe3110-5cfa-4f93-aae6-4b6300a289ac_gdc_realn.bam 46542908295 BAM harmonized CPTAC3 027a8df9-637e-4bf3-a12c-9c1e38dfa923 a1f2e3b01c7950ee8fb366f2b47cb309 {"aliquot_tag": "ALQ_96d14c42", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00503.MethArray.Green.A C3L-00503 LSCC Methylation_Array tissue_normal CPT0083010005 203219650127_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8f9125d5-27c7-4d6a-821e-fd240388e3e0 41a7496b40f712dfb5f16774650d8bf2 {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.MethArray.Green.T C3L-00503 LSCC Methylation_Array tumor CPT0082970010 202176300111_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8e88fa6d-eea1-42dc-b8f2-79fcdc241a2b 04a6b345f6ba1a95e1a141bda1e3aa40 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.MethArray.Red.A C3L-00503 LSCC Methylation_Array tissue_normal CPT0083010005 203219650127_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 c3fabd1f-d2dc-4101-9292-0321471e954b 81e96c52d17f1933e53280f81e19505a {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.MethArray.Red.T C3L-00503 LSCC Methylation_Array tumor CPT0082970010 202176300111_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 fe892c4b-e5b4-4c84-8751-00e701a426ef 963e173744ad366df3510af95e601ad6 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.miRNA-Seq.A.hg38 C3L-00503 LSCC miRNA-Seq tissue_normal CPT0083010007 99c65475-b1a2-45d4-a7cf-7d3d1b4a2671_mirnaseq_gdc_realn.bam 290357523 BAM harmonized CPTAC3 fb27f02c-9b46-4683-8068-7c587b77280b 3cdfb15f22087647871573073bb9d487 {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.miRNA-Seq.S1_L005_R1.A C3L-00503 LSCC miRNA-Seq tissue_normal CPT0083010007 181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L005_R1_001.unaln.bam 253723491 BAM S1_L005_R1 submitted_unaligned CPTAC3 b5fcb190-14be-4aa6-ba9c-a66fd5a0c22c 2b3693f811c3812777b891f1454ab0ed {"aliquot_tag": "ALQ_59cee2f6", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.miRNA-Seq.S20_L001_R1.T C3L-00503 LSCC miRNA-Seq tumor CPT0082970007 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L001_R1_001.unaln.bam 171813239 BAM S20_L001_R1 submitted_unaligned CPTAC3 ef78e8d3-9ceb-4a4c-a7e0-1e2291d881ea a88df740c9af83ef9182254b37d6d9e0 {"aliquot_tag": "ALQ_57f64d2a", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.miRNA-Seq.T.hg38 C3L-00503 LSCC miRNA-Seq tumor CPT0082970007 b3582bbd-11e1-44c4-842a-47b2ad632d31_mirnaseq_gdc_realn.bam 194835662 BAM harmonized CPTAC3 bd228905-c785-4856-9a71-0542be612807 d89376a16632a8c1f997baa7bf1ac8c3 {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.RNA-Seq.chimeric.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.chimeric.gdc_realn.bam 27849690 BAM chimeric harmonized CPTAC3 8ea6a1e1-f88b-4986-ab93-fa4fbe37e43c 68df87a04183a590b6300ea057cc94d9 {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.RNA-Seq.chimeric.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.chimeric.gdc_realn.bam 55133432 BAM chimeric harmonized CPTAC3 ffe3618f-5580-40d3-af1d-69a26db75170 c034c1dc2c24209782f2dd994ad1a204 {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.RNA-Seq.genomic.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.genomic.gdc_realn.bam 7776632564 BAM genomic harmonized CPTAC3 190aee81-b1b9-45e8-ac1c-6fc86d7b1331 4c5e32953440d002172f5a56f5d1860a {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.RNA-Seq.genomic.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.genomic.gdc_realn.bam 9603932757 BAM genomic harmonized CPTAC3 38be4f0e-28b7-4d72-af5e-c9358f154683 65e4913dd2c42ba23e70f1a269699da7 {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.RNA-Seq.S3_L001_R1.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3728782598 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 fdce22ee-161a-4432-ae86-7feb24ae101a 89beabaeca5f8f8e458eec0665ef9cd8 {"aliquot_tag": "ALQ_59cee2f6", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.RNA-Seq.S3_L001_R2.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3619344215 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 6eb0643b-579d-457a-838a-81f9f2dc72b7 3b93b5ee5b591123c3206a2b2a99acd3 {"aliquot_tag": "ALQ_59cee2f6", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.RNA-Seq.S5_L002_R1.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3874576899 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 d417ab83-b7a3-4d1f-a449-c5ef3dd1c622 39032deb230d45feb9f1b909f5bd0fd4 {"aliquot_tag": "ALQ_57f64d2a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.RNA-Seq.S5_L002_R2.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4268795449 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 4cc1e5db-b9b9-4181-9e63-e1b63e9de28c b7ab28d7bf2f20160472bf5a3f7f83aa {"aliquot_tag": "ALQ_57f64d2a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.RNA-Seq.transcriptome.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.transcriptome.gdc_realn.bam 9565474829 BAM transcriptome harmonized CPTAC3 45f28a88-0173-45de-ac76-d39dc650c21f df62e49be7b5cc189ee9b428df299152 {"aliquot_tag": "ALQ_59cee2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.RNA-Seq.transcriptome.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.transcriptome.gdc_realn.bam 10287037669 BAM transcriptome harmonized CPTAC3 189f7ecf-ede8-46c9-b3c9-3501642a72e6 cfe5a10a385bd04dd7641d3da802b98a {"aliquot_tag": "ALQ_57f64d2a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.WGS.N C3L-00503 LSCC WGS blood_normal CPT0081750001 CPT0081750001.WholeGenome.RP-1303.bam 74321480641 BAM submitted_aligned CPTAC3 0667fd6a-6acf-4a08-9021-dc3eda87bede b044c4973c57e9efe0fc07d8939cc704 {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00503.WGS.N.hg38 C3L-00503 LSCC WGS blood_normal CPT0081750001 9b1d1a96-4652-4b71-961a-1159746b2e10_gdc_realn.bam 114729660774 BAM harmonized CPTAC3 a8b7beaf-0808-4e2b-99ad-4981c2fca5c7 701e74d59b43e7398f39a4c09a2d452a {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00503.WGS.T C3L-00503 LSCC WGS tumor CPT0082970010 CPT0082970010.WholeGenome.RP-1303.bam 66101775183 BAM submitted_aligned CPTAC3 9f4baf4d-a9b9-428e-b0d9-b72c5ee00c85 c29d63a82269762e45aaef59e28aabdf {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.WGS.T.hg38 C3L-00503 LSCC WGS tumor CPT0082970010 e7d164b4-6504-4434-b466-31771b0cb8b6_gdc_realn.bam 99428718346 BAM harmonized CPTAC3 bc77e602-348c-4658-870a-f7b48274f3fa 2e73f645bc54112b2273fcde93b0093f {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.WXS.A C3L-00503 LSCC WXS tissue_normal CPT0083010005 CPT0083010005.WholeExome.RP-1303.bam 34751381322 BAM submitted_aligned CPTAC3 7744d123-95cb-487c-98e3-ecdca7448a4e 2060b8fd0dfaa1caf18a9a4a8843ba7d {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.WXS.A.hg38 C3L-00503 LSCC WXS tissue_normal CPT0083010005 a6cc9c02-0015-4192-8c47-0205c3fcbd87_wxs_gdc_realn.bam 46472612815 BAM harmonized CPTAC3 55cfbc38-2c3e-4285-86f5-3cbf45961ae9 f139fba5fabeba843612924d65223b61 {"aliquot_tag": "ALQ_b7c083da", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00503.WXS.N C3L-00503 LSCC WXS blood_normal CPT0081750001 CPT0081750001.WholeExome.RP-1303.bam 29547722174 BAM submitted_aligned CPTAC3 6c80638c-b611-42f0-81e0-2f5c8bdf930c 203213bb01791491d5fcc4f8d1421e96 {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00503.WXS.N.hg38 C3L-00503 LSCC WXS blood_normal CPT0081750001 9b1d1a96-4652-4b71-961a-1159746b2e10_gdc_realn.bam 40131980449 BAM harmonized CPTAC3 24b3b72d-c3cb-4dc9-96d2-3e8cf9230b52 2523576e12494509626d6de040890666 {"aliquot_tag": "ALQ_cfb7c092", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00503.WXS.T C3L-00503 LSCC WXS tumor CPT0082970010 CPT0082970010.WholeExome.RP-1303.bam 26560468225 BAM submitted_aligned CPTAC3 8648429a-cdb2-4366-8ecc-e8f579c3cbcf 1e6dd978629ce83894eafea533c17665 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00503.WXS.T.hg38 C3L-00503 LSCC WXS tumor CPT0082970010 e7d164b4-6504-4434-b466-31771b0cb8b6_gdc_realn.bam 36176673257 BAM harmonized CPTAC3 36693738-4fed-4e19-ad62-16391425c614 75a1f4f6101908766e81c527631b64f3 {"aliquot_tag": "ALQ_d089e9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00510.MethArray.Green.A C3L-00510 LUAD Methylation_Array tissue_normal CPT0011930009 203027390078_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ef0e40f7-131a-4cdf-a2cb-d2a2b838d129 56648d29c3bddc3dfbce4f94fe06ec14 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.MethArray.Green.T C3L-00510 LUAD Methylation_Array tumor CPT0011910007 202184990008_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5459d898-9b36-40a4-bf13-70429bc2552b e6c9ff8fc71bfbf33f7daad2485fd443 {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.MethArray.Red.A C3L-00510 LUAD Methylation_Array tissue_normal CPT0011930009 203027390078_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 1baceab8-4abe-4dd9-90fe-2e2ac7bec789 e92c3810160b9d4cfc142252a8dc93f7 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.MethArray.Red.T C3L-00510 LUAD Methylation_Array tumor CPT0011910007 202184990008_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 bab309b6-e5c1-44c3-a6dc-fc6195aca9b5 603af4b947be0761461c564b67c70c6b {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.miRNA-Seq.A.hg38 C3L-00510 LUAD miRNA-Seq tissue_normal CPT0011930006 fe02715c-f72b-4a74-b78c-9f29513e3270_mirnaseq_gdc_realn.bam 273923141 BAM harmonized CPTAC3 37240575-7ac8-40a1-a17a-b75f1564d780 11e636ae970ca05345adc359940d988e {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.miRNA-Seq.S31_L008_R1.A C3L-00510 LUAD miRNA-Seq tissue_normal CPT0011930006 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L008_R1_001.unaln.bam 248953041 BAM S31_L008_R1 submitted_unaligned CPTAC3 fa1d9bc7-5963-403c-9407-e7002bc3fccd 5ccf36772db9948b4bddb71a37da48d2 {"aliquot_tag": "ALQ_fbd6daca", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.miRNA-Seq.S37_L002_R1.T C3L-00510 LUAD miRNA-Seq tumor CPT0011910014 180924_UNC31-K00269_0154_AHWTMLBBXX_CATGGC_S37_L002_R1_001.unaln.bam 250673365 BAM S37_L002_R1 submitted_unaligned CPTAC3 cb332071-8079-410c-8e72-ac9da8a792a6 d2d56a0f13819829e5943f1218a5863c {"aliquot_tag": "ALQ_7603d9c7", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.miRNA-Seq.T.hg38 C3L-00510 LUAD miRNA-Seq tumor CPT0011910014 4ceda2f2-f727-4a1f-8adb-415fcc72cf77_mirnaseq_gdc_realn.bam 274000358 BAM harmonized CPTAC3 b9e883cb-d1d9-44ae-acf5-6d8fea09fabf 951cdb9b1843873234866d13f016cc84 {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.RNA-Seq.chimeric.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.chimeric.gdc_realn.bam 134699087 BAM chimeric harmonized CPTAC3 e15b954f-cd66-4f93-824f-193b5eb3aae4 40cc30efa0a61c315f34339e0a90afdc {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.RNA-Seq.chimeric.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.chimeric.gdc_realn.bam 48580010 BAM chimeric harmonized CPTAC3 d8045c48-181f-4a6f-b259-20fb48797068 f2626f87b4fbea73aeaec285d7bc5d1a {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.RNA-Seq.genomic.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.genomic.gdc_realn.bam 7142644479 BAM genomic harmonized CPTAC3 9d609eb1-ae04-4f60-8048-aae0e3d0063b ae6366f7d5a25c2d13435fd1af5f11ff {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.RNA-Seq.genomic.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.genomic.gdc_realn.bam 7658600162 BAM genomic harmonized CPTAC3 61e388dc-d8f4-419b-a322-4b42cf00ddb9 4935bab3d235911edfe676780189bff8 {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.RNA-Seq.S2_L001_R1.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R1_001.fastq.gz 3775735399 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 3c707e3d-ecc0-4eb2-9041-0d7049f7051d 908163235aaa9f53d3bab3ca40f53da3 {"aliquot_tag": "ALQ_7603d9c7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.RNA-Seq.S2_L001_R2.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R2_001.fastq.gz 4003271781 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 a47c1f9b-609e-4918-a421-2c0f025238f7 0aced7941cc0f05cc0a437609d04cc81 {"aliquot_tag": "ALQ_7603d9c7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.RNA-Seq.S6_L002_R1.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R1_001.fastq.gz 3384513131 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 03153020-a522-499f-b21c-8f591e4deac1 c6976d5f53715f7e2b048c26ee8ab5f8 {"aliquot_tag": "ALQ_fbd6daca", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.RNA-Seq.S6_L002_R2.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R2_001.fastq.gz 3690033007 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 bfd181a1-c5f3-40d6-946f-584b4640650a a8c2e98e7b3e2d1143e59a9e425dd1f7 {"aliquot_tag": "ALQ_fbd6daca", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.RNA-Seq.transcriptome.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.transcriptome.gdc_realn.bam 8863331752 BAM transcriptome harmonized CPTAC3 e1d26824-f324-43df-b4bd-98edaa4d6d68 1e646bdc453dd548d2fd4b1bb5923d9e {"aliquot_tag": "ALQ_fbd6daca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.RNA-Seq.transcriptome.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.transcriptome.gdc_realn.bam 8999938425 BAM transcriptome harmonized CPTAC3 a87d08d4-d1ea-4068-a003-aaa3337836be aa198475277f85902e0e97996a36338a {"aliquot_tag": "ALQ_7603d9c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.WGS.A C3L-00510 LUAD WGS tissue_normal CPT0011930009 CPT0011930009.WholeGenome.RP-1303.bam 55555268188 BAM submitted_aligned CPTAC3 0f850a83-9853-463e-b9b9-446ddb348621 50f29aca0ca87deee5889fa1c6b924b3 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.WGS.A.hg38 C3L-00510 LUAD WGS tissue_normal CPT0011930009 5647908e-8c82-4887-94db-e88fc075275d_wgs_gdc_realn.bam 80931299818 BAM harmonized CPTAC3 ca505e15-fc37-4072-b93a-480d15d6916d 9c52c7fe93f6968886fe7c55cb85549e {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.WGS.N C3L-00510 LUAD WGS blood_normal CPT0012490002 CPT0012490002.WholeGenome.RP-1303.bam 78712776110 BAM submitted_aligned CPTAC3 dd65cb4b-21ad-484a-a9c8-fbf3670cc1e5 b675a1d199358165b8449dbe6a4b8fee {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00510.WGS.N.hg38 C3L-00510 LUAD WGS blood_normal CPT0012490002 7877dbfe-0f47-4f17-8415-bbf4fac43aaa_gdc_realn.bam 115533506100 BAM harmonized CPTAC3 fa23d9da-e01e-488e-88e0-b64662d57826 ca600ec549a4fea6e6e743d9fae2a816 {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00510.WGS.T C3L-00510 LUAD WGS tumor CPT0011910007 CPT0011910007.WholeGenome.RP-1303.bam 60524578079 BAM submitted_aligned CPTAC3 66628b07-a624-4b7a-82bf-3f815aacd3c0 8c0672d144d1187783402ef221c2636a {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.WGS.T.hg38 C3L-00510 LUAD WGS tumor CPT0011910007 20dda897-e9c3-4180-bfae-686cff203424_gdc_realn.bam 86288638462 BAM harmonized CPTAC3 31bcd733-1f6a-4ae3-afc5-9503cde6821c 34df04c4f84e69e527807bfb2cd602dc {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.WXS.A C3L-00510 LUAD WXS tissue_normal CPT0011930009 CPT0011930009.WholeExome.RP-1303.bam 35630782170 BAM submitted_aligned CPTAC3 edaac88e-215e-43d3-b9e6-45ca11b3aaf7 b985f7e2fb0f88ac9f8c9501410549dd {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.WXS.A.hg38 C3L-00510 LUAD WXS tissue_normal CPT0011930009 5647908e-8c82-4887-94db-e88fc075275d_wxs_gdc_realn.bam 48904670313 BAM harmonized CPTAC3 170c8f25-85fe-4a66-8d41-cb9926cbc679 6e2264fff1e9606bc423957272e66f83 {"aliquot_tag": "ALQ_6b69c75b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00510.WXS.N C3L-00510 LUAD WXS blood_normal CPT0012490002 CPT0012490002.WholeExome.RP-1303.bam 33099797995 BAM submitted_aligned CPTAC3 626c2c65-cab6-4e5a-8e98-305c3a01f6f8 77f4a4996f96d1295918d257fa8c0626 {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00510.WXS.N.hg38 C3L-00510 LUAD WXS blood_normal CPT0012490002 7877dbfe-0f47-4f17-8415-bbf4fac43aaa_gdc_realn.bam 44901361910 BAM harmonized CPTAC3 88a680ac-60b4-473d-8a36-60159a789e3b b6b26c345f0f79e4f5577ee1d4f247f4 {"aliquot_tag": "ALQ_3b7d0f31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00510.WXS.T C3L-00510 LUAD WXS tumor CPT0011910007 CPT0011910007.WholeExome.RP-1303.bam 22383880769 BAM submitted_aligned CPTAC3 6061da9a-f2ca-42e7-92d6-523084944f95 9c9136c8af2e6192a674983a1ec99ea6 {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00510.WXS.T.hg38 C3L-00510 LUAD WXS tumor CPT0011910007 20dda897-e9c3-4180-bfae-686cff203424_gdc_realn.bam 30787897783 BAM harmonized CPTAC3 86533b96-e67b-4406-a7ff-10cc4ae81b6a 0a5caf7392401abf7b931408e7262c6f {"aliquot_tag": "ALQ_f611b93c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00540.MethArray.Green.Tpb C3L-00540 AML Methylation_Array tumor_peripheral_blood CPT0100710002 203561450073_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2ce50e32-d0a1-4741-91aa-b35ea43e233f e3798f98440b81506a1224aecfb59d0c {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.MethArray.Red.Tpb C3L-00540 AML Methylation_Array tumor_peripheral_blood CPT0100710002 203561450073_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 33fe8b6c-3189-47bb-a451-bbd771af5f3f 8cd52e7acdb994155f4c036140b3c2e9 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.miRNA-Seq.S17_L001_R1.Tpb C3L-00540 AML miRNA-Seq tumor_peripheral_blood CPT0100720002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 160283483 BAM S17_L001_R1 submitted_unaligned CPTAC3 c17bc6d5-2127-401d-8b53-f1b3f2a13d00 2d15c543bc106fced059886415887022 {"aliquot_tag": "ALQ_8677497a", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.miRNA-Seq.Tpb.hg38 C3L-00540 AML miRNA-Seq tumor_peripheral_blood CPT0100720002 2c428451-78bd-4dc5-9ea6-309e8635838b_mirnaseq_gdc_realn.bam 180745404 BAM harmonized CPTAC3 27e21ccd-54f9-4487-bf6d-c1d9932efb40 a03bce595bafd85f81a52cde31fa62e6 {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.RNA-Seq.chimeric.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.chimeric.gdc_realn.bam 19356422 BAM chimeric harmonized CPTAC3 bebfd95a-2c70-4a97-bfa2-1d69eb4380a8 8591fd90f61aacd265bd743d357d0da4 {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.RNA-Seq.genomic.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.genomic.gdc_realn.bam 18800119622 BAM genomic harmonized CPTAC3 deab4d03-2e34-4813-8b83-371814281496 b9bdb9fd6c7955a4e906976b19d2ec0c {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.RNA-Seq.S36_L006_R1.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R1_001.fastq.gz 4580057381 FASTQ S36_L006_R1 submitted_unaligned CPTAC3 41832e8e-3b03-4d30-9712-f64608fcbc7d ca3f2a03f31ced8dd5b08c0af9b3fe55 {"aliquot_tag": "ALQ_8677497a", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.RNA-Seq.S36_L006_R2.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R2_001.fastq.gz 5231080146 FASTQ S36_L006_R2 submitted_unaligned CPTAC3 132a48bf-35fb-44f6-b5c3-e3ca27975431 bbf27a139ae0d3a05f6ce52332b53b56 {"aliquot_tag": "ALQ_8677497a", "sample": "S36", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.RNA-Seq.transcriptome.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.transcriptome.gdc_realn.bam 8988812424 BAM transcriptome harmonized CPTAC3 bcbf0136-93a9-44fe-a0dd-fb22b0995789 ba730093c6247f8cd0b7062fa8cb0a21 {"aliquot_tag": "ALQ_8677497a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.WGS.Tpb C3L-00540 AML WGS tumor_peripheral_blood CPT0100710002 CPT0100710002.WholeGenome.RP-1303.bam 24415754014 BAM submitted_aligned CPTAC3 927912f8-65b3-4c01-a1f9-6352e835c5f0 ca59651a3efb3ed8d85899900d370851 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.WGS.Tpb.hg38 C3L-00540 AML WGS tumor_peripheral_blood CPT0100710002 3b978803-576d-458a-8e00-13b5e8935843_wgs_gdc_realn.bam 34323783240 BAM harmonized CPTAC3 6016e946-78ca-4212-b063-bc3a8556f11b e256fb3c89709c597b5eb90bf802c510 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.WXS.Nbc C3L-00540 AML WXS buccal_normal CPT0100630003 CPT0100630003.WholeExome.RP-1303.bam 16868710548 BAM submitted_aligned CPTAC3 181d72d8-36f3-40ae-8408-7f6e0b5efd18 b6fae0edeeac9d30ece4110c4bdd1870 {"aliquot_tag": "ALQ_74c83f9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00540.WXS.Nbc.hg38 C3L-00540 AML WXS buccal_normal CPT0100630003 f38bdb88-5103-4d22-9436-f9bb77ba3116_wxs_gdc_realn.bam 23807500097 BAM harmonized CPTAC3 da611fd3-6c53-4152-bf2e-4a6a4e9a9f0a f01b49874ca73ead0391d76176310450 {"aliquot_tag": "ALQ_74c83f9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00540.WXS.Tpb C3L-00540 AML WXS tumor_peripheral_blood CPT0100710002 CPT0100710002.WholeExome.RP-1303.bam 24415754086 BAM submitted_aligned CPTAC3 036a121a-3650-4a19-a32d-cc871e3265c0 f0d15cf016bd9d63659effd6447389ac {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00540.WXS.Tpb.hg38 C3L-00540 AML WXS tumor_peripheral_blood CPT0100710002 3b978803-576d-458a-8e00-13b5e8935843_wxs_gdc_realn.bam 34586447706 BAM harmonized CPTAC3 33fcee4a-7bcd-4297-8a60-c904b60d0542 67f7ca5b82d49b786fd3edeb18d2bba7 {"aliquot_tag": "ALQ_c1d733aa", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00561.MethArray.Green.T C3L-00561 CCRCC Methylation_Array tumor CPT0023350006 202184900140_R02C01_Grn.idat 13676261 IDAT Green NA CPTAC3 6a449a68-6568-4331-aa40-07d61408e374 12ae8ca83477a8617d61b8c35a8f1142 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.MethArray.Red.T C3L-00561 CCRCC Methylation_Array tumor CPT0023350006 202184900140_R02C01_Red.idat 13676261 IDAT Red NA CPTAC3 698f9174-e7e5-49f5-b5c5-5e67606eb616 ab669f65ab463858b4675266c6c5aa4b {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.miRNA-Seq.A.hg38 C3L-00561 CCRCC miRNA-Seq tissue_normal CPT0023360006 703aaad7-3056-4938-8099-108b6679ded4_mirnaseq_gdc_realn.bam 186189265 BAM harmonized CPTAC3 1908b205-c6a2-4b4f-8dc0-54a68f8560cb aacfdc9c6e9d56cd0e83a9fabc1efbcf {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.miRNA-Seq.S3_L003_R1.A C3L-00561 CCRCC miRNA-Seq tissue_normal CPT0023360006 181108_UNC31-K00269_0163_BH23TVBBXY_TTAGGC_S3_L003_R1_001.unaln.bam 165292329 BAM S3_L003_R1 submitted_unaligned CPTAC3 c1dedacc-cc33-41f8-996d-82ec5ac834b5 0e34dc2eec5a25ab282e69472b5a788a {"aliquot_tag": "ALQ_8bbd6016", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.miRNA-Seq.S43_L005_R1.T C3L-00561 CCRCC miRNA-Seq tumor CPT0023350009 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L005_R1_001.unaln.bam 183643474 BAM S43_L005_R1 submitted_unaligned CPTAC3 41b3c438-10a6-42ce-8f03-ca4d0953b6fb 0e2edbfb7070c584f406931e6265b5da {"aliquot_tag": "ALQ_5ca20757", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.miRNA-Seq.T.hg38 C3L-00561 CCRCC miRNA-Seq tumor CPT0023350009 da873fe0-1299-471c-9020-c61bd9b507dd_mirnaseq_gdc_realn.bam 200454944 BAM harmonized CPTAC3 07a0ae4d-ea22-4879-a010-3605fa3c7f7f 11949b57e842c347001845945ae1f260 {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.RNA-Seq.chimeric.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.chimeric.gdc_realn.bam 64741239 BAM chimeric harmonized CPTAC3 d291e3a8-e7e1-441e-947a-4ec27cadec6c b8ee9a0e30cfc3b2d1f868e45e0d28c1 {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.RNA-Seq.chimeric.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.chimeric.gdc_realn.bam 123801852 BAM chimeric harmonized CPTAC3 44c95e41-f49c-46dd-bab2-5e177164b2be 57aa2c81e55248fba47cdc1245ec2ad2 {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.RNA-Seq.genomic.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.genomic.gdc_realn.bam 6796733061 BAM genomic harmonized CPTAC3 3f107234-dc11-4e96-ab7c-07af9204b58c 6b5f87edce1a6696edbe8c6459cc60af {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.RNA-Seq.genomic.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.genomic.gdc_realn.bam 7758350409 BAM genomic harmonized CPTAC3 947fbc52-5128-471f-b4e4-b243b1f7b92a 7a0b24d455c200c5b92e7f79d3b0f35b {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.RNA-Seq.S19_L007_R1.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R1_001.fastq.gz 4208571272 FASTQ S19_L007_R1 submitted_unaligned CPTAC3 35c6b8a4-6a15-4e50-9dab-da1c77c77c74 5b4571cb31d8e1f3d58826b348cc03ca {"aliquot_tag": "ALQ_5ca20757", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.RNA-Seq.S19_L007_R2.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R2_001.fastq.gz 4515097532 FASTQ S19_L007_R2 submitted_unaligned CPTAC3 cf3c559c-9edf-464a-984b-14d4977ccfe5 bb0f5c6431281e22093fe58eca15971e {"aliquot_tag": "ALQ_5ca20757", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.RNA-Seq.S4_L006_R1.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R1_001.fastq.gz 3268340762 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 a3b123c4-9bdf-44b7-86b9-018ce64c95bb f5d04d063edde8bf5afc6fb9e030008a {"aliquot_tag": "ALQ_8bbd6016", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.RNA-Seq.S4_L006_R2.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R2_001.fastq.gz 3686578827 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 1a515eb3-e212-43d9-8bd4-89e3c259bf3a d40ac1112c80cbb189d650768a82d929 {"aliquot_tag": "ALQ_8bbd6016", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.RNA-Seq.transcriptome.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.transcriptome.gdc_realn.bam 8335079307 BAM transcriptome harmonized CPTAC3 e4657a9e-70c1-44ac-8fbe-46915b3808c2 e798e7405455d6bf9c131b83abb1aeba {"aliquot_tag": "ALQ_8bbd6016", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.RNA-Seq.transcriptome.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.transcriptome.gdc_realn.bam 11606147516 BAM transcriptome harmonized CPTAC3 1e587d74-506e-4c84-a0fa-67442580fff7 b0957fd7750031629048e0a4340d9d54 {"aliquot_tag": "ALQ_5ca20757", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.WGS.A C3L-00561 CCRCC WGS tissue_normal CPT0023360009 CPT0023360009.WholeGenome.RP-1303.bam 55449726555 BAM submitted_aligned CPTAC3 ef4150b5-203a-4eeb-b181-fc68cbc07714 0c7772c8c0524ec928e6f21c6970baec {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.WGS.A.hg38 C3L-00561 CCRCC WGS tissue_normal CPT0023360009 499db071-21c6-4e62-afb1-ab7b3b3f3d31_wgs_gdc_realn.bam 80272829983 BAM harmonized CPTAC3 19d99b83-9a48-40a8-ae3e-f387ebe4afa6 ecaa57e34fd8f69d364913abbe6db0b8 {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.WGS.N C3L-00561 CCRCC WGS blood_normal CPT0024550002 CPT0024550002.WholeGenome.RP-1303.bam 64950026176 BAM submitted_aligned CPTAC3 b29460eb-4c2d-4873-8b20-364cb4777b63 8fc1b3a383d6d9d39bab31ad18cf0885 {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00561.WGS.N.hg38 C3L-00561 CCRCC WGS blood_normal CPT0024550002 a54a0716-5554-41b5-8adf-70c76dedf8b7_gdc_realn.bam 93221503329 BAM harmonized CPTAC3 e75e68a9-7ea6-43b9-8da1-6a01f05acea8 91d1a5f9a07cfcb554d122c8055efadb {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00561.WGS.T C3L-00561 CCRCC WGS tumor CPT0023350006 CPT0023350006.WholeGenome.RP-1303.bam 61636129321 BAM submitted_aligned CPTAC3 b20f3266-d35b-4167-ab15-15b6bf8c1664 a9f13ed21f67a042713030e98a9596c0 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.WGS.T.hg38 C3L-00561 CCRCC WGS tumor CPT0023350006 56a6a879-3a4e-4e3b-a002-98c8be88c245_gdc_realn.bam 90244243768 BAM harmonized CPTAC3 44b4ef6c-47a3-485b-90b0-713dcc1c6e33 265272f69876b8d7acbdd8b9d2f9343e {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.WXS.A C3L-00561 CCRCC WXS tissue_normal CPT0023360009 CPT0023360009.WholeExome.RP-1303.bam 43546071810 BAM submitted_aligned CPTAC3 bc2f4062-00e3-4cfe-84ca-5bf1a33a31ff 32f49e6c6bf9d09252cbb15e88ba5198 {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.WXS.A.hg38 C3L-00561 CCRCC WXS tissue_normal CPT0023360009 499db071-21c6-4e62-afb1-ab7b3b3f3d31_wxs_gdc_realn.bam 59155317587 BAM harmonized CPTAC3 438208b8-38c6-4ef2-b2d3-f77098109a4f 007ea0fb7432fe89601d0134f9b295d9 {"aliquot_tag": "ALQ_1b027d87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00561.WXS.N C3L-00561 CCRCC WXS blood_normal CPT0024550002 CPT0024550002.WholeExome.RP-1303.bam 23648121454 BAM submitted_aligned CPTAC3 72aea9dd-43e4-4bb0-b5a4-8233be4e04e9 225da16baa1f88f0b2baea22d6138cd7 {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00561.WXS.N.hg38 C3L-00561 CCRCC WXS blood_normal CPT0024550002 a54a0716-5554-41b5-8adf-70c76dedf8b7_gdc_realn.bam 32241698422 BAM harmonized CPTAC3 17be3adb-c798-4e88-a32d-ee6614b361fb 03002a0b2d8040d1a348148cada04ead {"aliquot_tag": "ALQ_d88e034c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00561.WXS.T C3L-00561 CCRCC WXS tumor CPT0023350006 CPT0023350006.WholeExome.RP-1303.bam 23775960193 BAM submitted_aligned CPTAC3 1a92ed12-f911-47f9-873d-d7a2d9dea36d 281b461c4818e2de8aa9e09f636e6175 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00561.WXS.T.hg38 C3L-00561 CCRCC WXS tumor CPT0023350006 56a6a879-3a4e-4e3b-a002-98c8be88c245_gdc_realn.bam 32671779408 BAM harmonized CPTAC3 51b0205f-d289-4913-981d-e9cb6cc31cb6 c910fa9f3e6d760c4f2814c5b3fbc526 {"aliquot_tag": "ALQ_cc1d1ac6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.MethArray.Green.T C3L-00563 UCEC Methylation_Array tumor CPT0063250009 202184900105_R07C01_Grn.idat 13676222 IDAT Green NA CPTAC3 d1468514-1755-4401-b8b1-e619e09ff1cd 1c93fa4311ccfddfca3b6cc1c3797b03 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.MethArray.Red.T C3L-00563 UCEC Methylation_Array tumor CPT0063250009 202184900105_R07C01_Red.idat 13676222 IDAT Red NA CPTAC3 ee07481c-bd3c-49f1-b4e8-381958faefce 91f7854ee4ef58bb34129fdcfde5cdb0 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.miRNA-Seq.S16_L003_R1.T C3L-00563 UCEC miRNA-Seq tumor CPT0063250006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGTCA_S16_L003_R1_001.unaln.bam 231283210 BAM S16_L003_R1 submitted_unaligned CPTAC3 827f6a12-1cf5-4cd1-a7b8-d3f89ee207d5 d5c47f139f72f8d6af5a507f93fb2544 {"aliquot_tag": "ALQ_830bc799", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.miRNA-Seq.T.hg38 C3L-00563 UCEC miRNA-Seq tumor CPT0063250006 5bf7c495-ea4a-47fc-8de1-f5692ef9e25d_mirnaseq_gdc_realn.bam 254741872 BAM harmonized CPTAC3 a53fc6c7-56a1-45b6-9e40-4446042cedbb aaf8a80e04d872c5251d088906e91ea5 {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.chimeric.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.chimeric.gdc_realn.bam 33591624 BAM chimeric harmonized CPTAC3 48d674db-e9bb-4fd0-82e6-55647a1c58eb 42761b6ce036ae8185edea3ef7543501 {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.chimeric.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.chimeric.gdc_realn.bam 288454715 BAM chimeric harmonized CPTAC3 b8f7920b-6b31-46ba-b5c6-df90676c0a66 3e7889f020a367fa88d9cb82eeccd63d {"aliquot_tag": "ALQ_5a9a280f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.genomic.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.genomic.gdc_realn.bam 9578391817 BAM genomic harmonized CPTAC3 8f691e22-deb4-4e9e-ad1b-6654b9e5be17 ca99b4f200e8be4a0a80cae5b02215c9 {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.genomic.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.genomic.gdc_realn.bam 10763665344 BAM genomic harmonized CPTAC3 214f3768-2ea5-45ee-b754-8380e36c49f5 22485f5319509772a89accd39f4eb7cd {"aliquot_tag": "ALQ_5a9a280f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.S14_R1.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R1_001.fastq.gz 6381253574 FASTQ S14_R1 submitted_unaligned CPTAC3 fecefe79-a533-43c0-b94b-876fcc3a85d9 81ccaafbab86f7a848461e09c4557b02 {"aliquot_tag": "ALQ_5a9a280f", "sample": "S14", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.S14_R2.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R2_001.fastq.gz 6502247363 FASTQ S14_R2 submitted_unaligned CPTAC3 01efb671-0dd5-48a9-9deb-54713c876e19 6aaa05f572f1a551cc8228afe0a3e83b {"aliquot_tag": "ALQ_5a9a280f", "sample": "S14", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.S7_L002_R1.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4620585758 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 8b076b0a-e1a0-4215-ab01-2aa7e0a0d947 881f23dce41beb2fad34eb3e77d7a032 {"aliquot_tag": "ALQ_830bc799", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.S7_L002_R2.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4894573355 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 9c892a88-3d18-4757-8c0c-ae75966102c7 62a29338ac7805962ae73a94c7b29a72 {"aliquot_tag": "ALQ_830bc799", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.transcriptome.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.transcriptome.gdc_realn.bam 10986344753 BAM transcriptome harmonized CPTAC3 08a9a1cc-ab3b-4be9-8a92-ae1211a50b2e 395a1f81a3af168fbcd55a1e1acc2cfd {"aliquot_tag": "ALQ_830bc799", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.RNA-Seq.transcriptome.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.transcriptome.gdc_realn.bam 6486101873 BAM transcriptome harmonized CPTAC3 c0c95b71-f700-4106-b2d5-5f45410877b4 074d638c8f067db1a167f6493d215a84 {"aliquot_tag": "ALQ_5a9a280f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.WGS.N C3L-00563 UCEC WGS blood_normal CPT0065230002 CPT0065230002.WholeGenome.RP-1303.bam 68342694247 BAM submitted_aligned CPTAC3 11a6ba88-8c79-4c97-9661-341fd024746d de9088aabfacb8543f8a4bcf797838d6 {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00563.WGS.N.hg38 C3L-00563 UCEC WGS blood_normal CPT0065230002 f38738f1-ed43-4824-9c84-b23a66d122b2_gdc_realn.bam 102537189019 BAM harmonized CPTAC3 611aab51-5e8b-42a5-a07c-0f263c5b99cb 4158eb5a091433e280d999c30ce8ab34 {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00563.WGS.T C3L-00563 UCEC WGS tumor CPT0063250009 CPT0063250009.WholeGenome.RP-1303.bam 69042667663 BAM submitted_aligned CPTAC3 ea8c25ae-f685-4c9d-89b0-a74524e05571 03ce3a253ecb03df2a424fe8b76f5f6b {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.WGS.T.hg38 C3L-00563 UCEC WGS tumor CPT0063250009 e1743cdd-69f2-4643-810d-4f1c677560ac_gdc_realn.bam 105011002665 BAM harmonized CPTAC3 8135d8d2-1d84-43d2-ac41-4eec5cebb607 d6b141c6e2d074a87aa9278d9c45ded9 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.WXS.N C3L-00563 UCEC WXS blood_normal CPT0065230002 CPT0065230002.WholeExome.RP-1303.bam 34317449990 BAM submitted_aligned CPTAC3 448749b6-0e8b-453a-9ba9-5a1cc5e29180 80055f93af783c1c228f40b9d2b4329a {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00563.WXS.N.hg38 C3L-00563 UCEC WXS blood_normal CPT0065230002 f38738f1-ed43-4824-9c84-b23a66d122b2_gdc_realn.bam 46328877788 BAM harmonized CPTAC3 f80735d2-6a7e-4d58-965d-5b3b48520bd0 125c42c32209217978d7e1f1fa4120cd {"aliquot_tag": "ALQ_68f6c31a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00563.WXS.T C3L-00563 UCEC WXS tumor CPT0063250009 CPT0063250009.WholeExome.RP-1303.bam 33371397481 BAM submitted_aligned CPTAC3 b420d0ad-d133-4c1a-8506-5dffabc3e722 7eb15fec58320f750bc8536f6fc3d708 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00563.WXS.T.hg38 C3L-00563 UCEC WXS tumor CPT0063250009 e1743cdd-69f2-4643-810d-4f1c677560ac_gdc_realn.bam 45947584973 BAM harmonized CPTAC3 1b3536a2-9329-4dd7-a180-fdeb3e6c96e8 1e9daff48ca7dfe3b820229f6b14b650 {"aliquot_tag": "ALQ_13b4da08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.MethArray.Green.A C3L-00568 LSCC Methylation_Array tissue_normal CPT0023500006 203219650100_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a1304bb1-cc76-4935-b76c-c0707fd6194f 242f661acd7b35e5e3d5021ea5778b7d {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.MethArray.Green.T C3L-00568 LSCC Methylation_Array tumor CPT0023470005 202176290145_R06C01_Grn.idat 13676225 IDAT Green NA CPTAC3 bc833d31-8ebd-4e77-9d4b-4662f3bc9a94 da9d5c713db3098f8b57138cbdaf145b {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.MethArray.Red.A C3L-00568 LSCC Methylation_Array tissue_normal CPT0023500006 203219650100_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 1f498546-aa3b-49d6-bd3b-d0b2514e6b58 f18aac379b6282f5a9de293a931bb35d {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.MethArray.Red.T C3L-00568 LSCC Methylation_Array tumor CPT0023470005 202176290145_R06C01_Red.idat 13676225 IDAT Red NA CPTAC3 05229768-3047-4534-9de8-5ee2dcb7042c 02c2dcdc2e8d57bdfd4e50c317256ae9 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.miRNA-Seq.A.hg38 C3L-00568 LSCC miRNA-Seq tissue_normal CPT0023500009 33fb55c9-595d-4f68-b22d-79de99024037_mirnaseq_gdc_realn.bam 281134392 BAM harmonized CPTAC3 ae82e0ff-a25f-4463-97b1-58172bc4a381 2383d36c3d2e5695ed12693b95cd545a {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.miRNA-Seq.S1_L005_R1.T C3L-00568 LSCC miRNA-Seq tumor CPT0023470008 181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L005_R1_001.unaln.bam 228797197 BAM S1_L005_R1 submitted_unaligned CPTAC3 0ff60bec-6090-4e8c-b3b5-9c59ecc2dbc7 0684987aba1ef1df26eacae355de3d81 {"aliquot_tag": "ALQ_4c605419", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.miRNA-Seq.S41_L006_R1.A C3L-00568 LSCC miRNA-Seq tissue_normal CPT0023500009 181113_UNC31-K00269_0164_AH23NNBBXY_GTAGAG_S41_L006_R1_001.unaln.bam 254305543 BAM S41_L006_R1 submitted_unaligned CPTAC3 e8c1a0b6-13b1-481d-b53a-60ea5f9b18b0 bdd8127f8428c519fa41cf832289f34d {"aliquot_tag": "ALQ_421b6b3a", "sample": "S41", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.miRNA-Seq.T.hg38 C3L-00568 LSCC miRNA-Seq tumor CPT0023470008 6325c528-6915-40af-8fa1-f335b0ea1ad4_mirnaseq_gdc_realn.bam 260349419 BAM harmonized CPTAC3 e4a20327-e551-45d8-88da-5fd4c0451cb6 03c922198ccf49b529d3c0952b790c55 {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.RNA-Seq.chimeric.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.chimeric.gdc_realn.bam 27407910 BAM chimeric harmonized CPTAC3 71b7c70d-ce05-4912-aefb-fbe6c5df702f 875478df05ee5304c8e4eebaddbc5c0d {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.RNA-Seq.chimeric.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.chimeric.gdc_realn.bam 58041655 BAM chimeric harmonized CPTAC3 818715f1-43a0-4194-9328-e9b1665b7a18 0062ff6068fe03a6c057501c0042572b {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.RNA-Seq.genomic.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.genomic.gdc_realn.bam 9430125143 BAM genomic harmonized CPTAC3 a0d2d1b1-95fe-4a10-aee6-58c222acb979 46fa876edc1e78b3a9dc328f881d6816 {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.RNA-Seq.genomic.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.genomic.gdc_realn.bam 8397048862 BAM genomic harmonized CPTAC3 50db6d69-1727-4ee7-9eda-666507fa16c4 099a00d93fff3b6e5958625f018ba9a2 {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.RNA-Seq.S13_L008_R1.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R1_001.fastq.gz 3525236638 FASTQ S13_L008_R1 submitted_unaligned CPTAC3 703dcfe1-5b06-436f-aa6e-95e945ee9dcc 87b722d04c56b1ed8eef9478625780d4 {"aliquot_tag": "ALQ_4c605419", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.RNA-Seq.S13_L008_R2.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R2_001.fastq.gz 3776890380 FASTQ S13_L008_R2 submitted_unaligned CPTAC3 0bbd7e2e-fdaf-4465-bfa2-a40946256805 8dee08deb306bce2cea8ad97681ba060 {"aliquot_tag": "ALQ_4c605419", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.RNA-Seq.S9_L003_R1.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3555174352 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 71964440-fe3e-4d98-aa81-e03b1f107ef2 76794c2f107aa1eb16ba872ac0fffe92 {"aliquot_tag": "ALQ_421b6b3a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.RNA-Seq.S9_L003_R2.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 3943839493 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 799d7ef2-c594-44cd-93c5-d2644bd53034 7113549fca3d9cf138970e6f58228e4e {"aliquot_tag": "ALQ_421b6b3a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.RNA-Seq.transcriptome.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.transcriptome.gdc_realn.bam 9985252039 BAM transcriptome harmonized CPTAC3 230a5b13-aa7d-41a0-8c2d-271dd756dbdc 0e99a2700182e0c2df64496de782aa6e {"aliquot_tag": "ALQ_421b6b3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.RNA-Seq.transcriptome.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.transcriptome.gdc_realn.bam 8580749282 BAM transcriptome harmonized CPTAC3 b6ffeac0-dda0-4c75-ac76-51ad91274ec9 423eeb9b141108ada0453538bc3ac3a1 {"aliquot_tag": "ALQ_4c605419", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.WGS.A C3L-00568 LSCC WGS tissue_normal CPT0023500006 CPT0023500006.WholeGenome.RP-1303.bam 64731420005 BAM submitted_aligned CPTAC3 0b36ee5f-f074-4c5e-97f4-5f9b34419934 d928805e2ee42655312c67a50eef1658 {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.WGS.A.hg38 C3L-00568 LSCC WGS tissue_normal CPT0023500006 d6197e35-b862-4f90-8986-af1a6450b2f7_wgs_gdc_realn.bam 94810014779 BAM harmonized CPTAC3 aa870c2e-837e-4013-9eee-19a1c23bb28c ecbd0feec22737596095a7e17a6735aa {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.WGS.N C3L-00568 LSCC WGS blood_normal CPT0024570002 CPT0024570002.WholeGenome.RP-1303.bam 73714295706 BAM submitted_aligned CPTAC3 24c44882-146f-45a2-a14d-e96eb5a1aff1 57c47a4ffc5e072a1aba6e836144cce1 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00568.WGS.N.hg38 C3L-00568 LSCC WGS blood_normal CPT0024570002 556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 109357855846 BAM harmonized CPTAC3 a1415e5d-d67b-494a-9bc7-f2b1d7548803 4f51a92b8c4ad53bc5314c8f64cd8334 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00568.WGS.T C3L-00568 LSCC WGS tumor CPT0023470005 CPT0023470005.WholeGenome.RP-1303.bam 57803688645 BAM submitted_aligned CPTAC3 ff179454-3c74-4a74-8dae-3ee73051c277 e7858b497206e6284f3dc47a2d37186d {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.WGS.T.hg38 C3L-00568 LSCC WGS tumor CPT0023470005 a5b555c2-cf25-4110-829e-6d4d6ba23e1e_gdc_realn.bam 85102392288 BAM harmonized CPTAC3 53d1bac2-cd1f-4a52-919a-088825cfb7af 97e21c17a8e9d27063b2e357ebaae545 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.WXS.A C3L-00568 LSCC WXS tissue_normal CPT0023500006 CPT0023500006.WholeExome.RP-1303.bam 28375576199 BAM submitted_aligned CPTAC3 eb7e3821-9f2d-4f3f-861c-776a3018df2a 541b6a876984507ba85be55ff75ea5a7 {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.WXS.A.hg38 C3L-00568 LSCC WXS tissue_normal CPT0023500006 d6197e35-b862-4f90-8986-af1a6450b2f7_wxs_gdc_realn.bam 37682193705 BAM harmonized CPTAC3 83a5b91e-7e86-49c9-aa73-50784d8d6ed3 8c9a5a66438e7d1fc78be08ed40f75c3 {"aliquot_tag": "ALQ_d2a476ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00568.WXS.N C3L-00568 LSCC WXS blood_normal CPT0024570002 CPT0024570002.WholeExome.RP-1303.bam 38919555209 BAM submitted_aligned CPTAC3 593bd2b5-cfc7-48b3-8e38-f457c96c23c3 4002a601da48b450aa04adb728b9f4e1 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00568.WXS.N.hg38 C3L-00568 LSCC WXS blood_normal CPT0024570002 556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 53080986015 BAM harmonized CPTAC3 63c3f570-84a2-4548-b619-ed7c70a38485 3572184dff437eec1195f7b9fbd55979 {"aliquot_tag": "ALQ_a24e502c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00568.WXS.T C3L-00568 LSCC WXS tumor CPT0023470005 CPT0023470005.WholeExome.RP-1303.bam 42088904861 BAM submitted_aligned CPTAC3 7cc564c8-c20d-4b7e-8725-d497e149861c 5484c0ae748cbaac7b0d6ebe11df88a3 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00568.WXS.T.hg38 C3L-00568 LSCC WXS tumor CPT0023470005 a5b555c2-cf25-4110-829e-6d4d6ba23e1e_gdc_realn.bam 58982752050 BAM harmonized CPTAC3 8aa9bbda-91e8-44b1-aa01-0fd1c7cbef5f 89172bc01d20e9f3026b6664b76bc132 {"aliquot_tag": "ALQ_32d128a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_24db241.MethArray.Green.T C3L-00581 CCRCC Methylation_Array tumor CPT0007410009 204367490057_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 3a4c98c1-7bee-4735-bcb6-036effb9b606 335ec5ab5d52d74df30b93dc727d1987 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_24db241.MethArray.Red.T C3L-00581 CCRCC Methylation_Array tumor CPT0007410009 204367490057_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 678db087-bb05-44d4-893b-f02b46919fd2 edb1132b92f987f8baf961f8b7efb072 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_24db241.WGS.T C3L-00581 CCRCC WGS tumor CPT0007410009 CPT0007410009.WholeGenome.RP-2158.bam 26433659406 BAM submitted_aligned CPTAC3 4c113f9d-141a-4c10-807f-02498628d588 27692332388750e2a516bf0397c85c7a {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_24db241.WGS.T.hg38 C3L-00581 CCRCC WGS tumor CPT0007410009 0701a048-fa71-42c0-853d-329a0d5aa4f1_wgs_gdc_realn.bam 80105203428 BAM harmonized CPTAC3 e803e3c2-a5f5-43d7-983f-f0bb647cf2f8 439af0ba49e1adf98c4b99d47967e495 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_24db241.WXS.T C3L-00581 CCRCC WXS tumor CPT0007410009 CPT0007410009.WholeExome.RP-1303.bam 47988304333 BAM submitted_aligned CPTAC3 3ac6322d-2f80-4bb5-a400-6015566d0b72 cbccbb61a8fd46e5ce23da18b2b7a399 {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_24db241.WXS.T.hg38 C3L-00581 CCRCC WXS tumor CPT0007410009 0701a048-fa71-42c0-853d-329a0d5aa4f1_wxs_gdc_realn.bam 66698292996 BAM harmonized CPTAC3 a177df73-ff56-40e8-b1fa-680c3f6a94c7 de9f9e84cb85a0eb32a05baaf408a3ac {"aliquot_tag": "DUP_24db241", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_6588d199.MethArray.Green.T C3L-00581 CCRCC Methylation_Array tumor CPT0007330009 204372030015_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 b9229d25-50ab-4187-8767-1f6256976d6d 855a77a030564a11de332c6bc47dd08e {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_6588d199.MethArray.Red.T C3L-00581 CCRCC Methylation_Array tumor CPT0007330009 204372030015_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 e348080d-8087-4bbe-b34e-eb196589dd4e f354d5606005beec0ba2ab05c2bfd5c5 {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_6588d199.WGS.T C3L-00581 CCRCC WGS tumor CPT0007330009 CPT0007330009.WholeGenome.RP-2158.bam 23647325695 BAM submitted_aligned CPTAC3 8c03258a-4828-4f4e-b6d6-afa450450ac2 20f212fbd4c4d8691d8a4f23b2639a0d {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_6588d199.WGS.T.hg38 C3L-00581 CCRCC WGS tumor CPT0007330009 59865d46-a742-4ac0-88a1-2973bccead8e_wgs_gdc_realn.bam 68986127272 BAM harmonized CPTAC3 de0bba0c-65ae-49ac-b741-332b4af6ad8d 7f6cd0ee0975146838a8b980b356a298 {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_6588d199.WXS.T C3L-00581 CCRCC WXS tumor CPT0007330009 CPT0007330009.WholeExome.RP-1303.bam 19300326576 BAM submitted_aligned CPTAC3 6c49e2ec-c5ba-4d1e-b70e-49f7c5faa76f e327afa954140a8fba7bbe6dc189c4f8 {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_6588d199.WXS.T.hg38 C3L-00581 CCRCC WXS tumor CPT0007330009 59865d46-a742-4ac0-88a1-2973bccead8e_wxs_gdc_realn.bam 26370101952 BAM harmonized CPTAC3 6cb9dfeb-2e8a-4548-99d2-912e6bfb55bd 8e2176321a08bd8868d93d935673d70c {"aliquot_tag": "DUP_6588d199", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_92f2afd0.miRNA-Seq.S46_L003_R1.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007410006 200526_UNC32-K00270_0248_BHH7WFBBXY_TGACCA_S46_L003_R1_001.unaln.bam 260391663 BAM S46_L003_R1 submitted_unaligned CPTAC3 962009ea-88e0-4cc6-aed4-c36e53eabfcf c63b1129864b01b455de7ae0f97215aa {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_92f2afd0.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007410006 773f7ad4-601e-4cd8-b980-fc247390ce86_mirnaseq_gdc_realn.bam 290074511 BAM harmonized CPTAC3 b28e9fd3-ecdb-4710-a57e-1b6f5385d60c 315dae76d8fe64f5c44e4735222b0cd0 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_92f2afd0.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.chimeric.gdc_realn.bam 30936631 BAM chimeric harmonized CPTAC3 048f9ad5-096c-4054-b514-eb8f7917fe71 2bd2382368c0583cc763a7ab045410c3 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_92f2afd0.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.genomic.gdc_realn.bam 7045977940 BAM genomic harmonized CPTAC3 fc731756-9681-4dd2-83d6-11c046cf6b25 02afa27eff134b26b4ce630b4d3ad106 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_92f2afd0.RNA-Seq.S32_L008_R1.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R1_001.fastq.gz 3267825908 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 c270b0a2-869d-47f9-b418-39a5fc471781 557a9b4274b0ae876133285e1a3f7c54 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_92f2afd0.RNA-Seq.S32_L008_R2.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R2_001.fastq.gz 3872896238 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 758ec05b-4bf7-4841-a92a-63dd823807df 8c4c721ce8b765c5e2a088b7ead00c8f {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_92f2afd0.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.transcriptome.gdc_realn.bam 9111468254 BAM transcriptome harmonized CPTAC3 78bddf73-79ea-421b-bd14-1dc21c30e97f 67cbd2fa2c79a836ad67b8175f3fc9d3 {"aliquot_tag": "DUP_92f2afd0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_f537cc08.miRNA-Seq.S21_L006_R1.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007330006 201209_UNC32-K00270_0265_AHJ55WBBXY_TCGGCA_S21_L006_R1_001.unaln.bam 240886166 BAM S21_L006_R1 submitted_unaligned CPTAC3 f764d1a9-e933-45fd-9471-668e7239288d 6c892445c1e6e3efb40a0cbb0c0d37bc {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_f537cc08.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007330006 b47317d1-3276-4937-9eef-e6ffb7da72f1_mirnaseq_gdc_realn.bam 263587127 BAM harmonized CPTAC3 7993ff5f-98f2-4f10-a36b-d332e0a737c6 db80c70e137c02209f0ed72b3b905fdd {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_f537cc08.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.chimeric.gdc_realn.bam 42820477 BAM chimeric harmonized CPTAC3 208a8192-331b-4c00-81d9-305520ae73a4 b66b351daf03540da08da09f8b90d340 {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_f537cc08.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.genomic.gdc_realn.bam 8672788874 BAM genomic harmonized CPTAC3 aa457f88-fca8-4a20-b777-c7d413f2cb9f 7208e5c6036a925cce0f9c70e677be82 {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_f537cc08.RNA-Seq.S31_L008_R1.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R1_001.fastq.gz 4121114773 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 72c54741-3962-47fe-bd92-4f15eb675c54 5ae8594dd70dfd6ea5bd49b933afc7ce {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_f537cc08.RNA-Seq.S31_L008_R2.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R2_001.fastq.gz 4740809569 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 43b5c2c0-f3fb-4e36-bc50-a86a0f1af22f 1a7b550e7abfca70a5be2e59b83b589d {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.DUP_f537cc08.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.transcriptome.gdc_realn.bam 11562295471 BAM transcriptome harmonized CPTAC3 0f244c75-0418-4f25-8c11-e3d3d0153ea9 d609e250bbe23d581c910fdf9f91540a {"aliquot_tag": "DUP_f537cc08", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.MethArray.Green.A C3L-00581 CCRCC Methylation_Array tissue_normal CPT0007470009 204930640011_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e4624fea-a14e-4105-9f04-9d4d34c2a99e 62c980742a231d69cefbfcc90d24302a {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.MethArray.Green.T C3L-00581 CCRCC Methylation_Array tumor CPT0007320009 202184990069_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5e73e331-8d68-4aaa-ad4c-1b3d191049e7 9d504313344a14351de6aabce08c8fa0 {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.MethArray.Red.A C3L-00581 CCRCC Methylation_Array tissue_normal CPT0007470009 204930640011_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 84ff7851-f724-429e-b9a4-065fbaad94a8 04cf1fb9437e9047eb96e2e6514fec50 {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.MethArray.Red.T C3L-00581 CCRCC Methylation_Array tumor CPT0007320009 202184990069_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 3f181994-f6be-4497-8fe8-08fc9b75b0e4 77f4ddfe548d97e7ae782a8a156e55bd {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.miRNA-Seq.A.hg38 C3L-00581 CCRCC miRNA-Seq tissue_normal CPT0007470006 3f432bf7-06b8-454d-95d5-ad20706f41d3_mirnaseq_gdc_realn.bam 220194353 BAM harmonized CPTAC3 078d56d7-1b1c-4c6a-8427-4964106e6c11 89c7f079dbf6ce66e3b439c8c3490670 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.miRNA-Seq.S16_L005_R1.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007320006 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L005_R1_001.unaln.bam 211021100 BAM S16_L005_R1 submitted_unaligned CPTAC3 a978f53b-1e05-46e9-a0d6-32a9268da128 a5ffab99d53370d3266b3925aed62e88 {"aliquot_tag": "ALQ_c857e5b8", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.miRNA-Seq.S41_L004_R1.A C3L-00581 CCRCC miRNA-Seq tissue_normal CPT0007470006 181108_UNC31-K00269_0163_BH23TVBBXY_GACGAC_S41_L004_R1_001.unaln.bam 197084497 BAM S41_L004_R1 submitted_unaligned CPTAC3 9cbf526f-aa6c-4d3b-8808-2083db83d63d 3c9085b06e8bb80d97a636828bf88b12 {"aliquot_tag": "ALQ_1db25a70", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007320006 49001195-cda0-4c86-bdcc-1be1769e1206_mirnaseq_gdc_realn.bam 233410776 BAM harmonized CPTAC3 2f61908d-1e05-4b73-a1aa-cdbbb5666e93 0ffde20b2ccfdbaeec64f7e9595a3d6d {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.RNA-Seq.chimeric.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.chimeric.gdc_realn.bam 77030163 BAM chimeric harmonized CPTAC3 ad10fbea-861b-4a9d-8576-2e32f7c7462f f94b6810368ef1fb0615ac55033939e4 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.chimeric.gdc_realn.bam 87550110 BAM chimeric harmonized CPTAC3 fec1a19b-048c-4c75-8fbc-35d8e3862d35 cf65411006538336f2f589522c612f04 {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.RNA-Seq.genomic.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.genomic.gdc_realn.bam 9267981335 BAM genomic harmonized CPTAC3 1b849705-0426-4ac2-9d4b-c35af0b9098a 499a2d1b1b03115dbe09cbc05e9a1dc2 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.genomic.gdc_realn.bam 10470128420 BAM genomic harmonized CPTAC3 61d3c350-b42d-49bc-9006-4effc1335172 4b90437522455c150a258880cf644e35 {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.RNA-Seq.S44_L004_R1.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R1_001.fastq.gz 4482778225 FASTQ S44_L004_R1 submitted_unaligned CPTAC3 f761dab3-3ff1-4a49-9474-8036d27c9280 2659fecee1adbb3419bb2b1f24924b8e {"aliquot_tag": "ALQ_1db25a70", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.RNA-Seq.S44_L004_R2.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R2_001.fastq.gz 4732494986 FASTQ S44_L004_R2 submitted_unaligned CPTAC3 d3811f1e-b92a-4957-8381-aff5be4e16fe 00ede637a9549119d3153c28e75d4b75 {"aliquot_tag": "ALQ_1db25a70", "sample": "S44", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.RNA-Seq.S9_L003_R1.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R1_001.fastq.gz 5032213698 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 dcb8323b-2167-4006-b110-77be5dc764f2 b63a627569f61690073d8c9d4b46f9ff {"aliquot_tag": "ALQ_c857e5b8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.RNA-Seq.S9_L003_R2.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R2_001.fastq.gz 5480544572 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 9a5a64fa-d904-4a25-be8b-3ba527e2b306 bcba8db1fe5a531d42eb6957b6682fb4 {"aliquot_tag": "ALQ_c857e5b8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.RNA-Seq.transcriptome.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.transcriptome.gdc_realn.bam 10853877875 BAM transcriptome harmonized CPTAC3 1ed4301d-d4a4-45fc-9854-025749708b12 81449eab8315f0250438c49aa4ea81c5 {"aliquot_tag": "ALQ_1db25a70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.transcriptome.gdc_realn.bam 14499440378 BAM transcriptome harmonized CPTAC3 06c2c69a-b7f4-4bb2-a126-9354d98e3ead 301cfe25270522c0c1bb1d72315f1727 {"aliquot_tag": "ALQ_c857e5b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.WGS.A C3L-00581 CCRCC WGS tissue_normal CPT0007470009 CPT0007470009.WholeGenome.RP-1303.bam 63419664252 BAM submitted_aligned CPTAC3 e3c15a95-5d39-48ce-97ea-b7e2d4ae593c d7657c733c4c1418e9b170cdf41c4375 {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.WGS.A.hg38 C3L-00581 CCRCC WGS tissue_normal CPT0007470009 4f72a152-448d-4036-8ddb-a12576e7689c_wgs_gdc_realn.bam 91702661429 BAM harmonized CPTAC3 96faf309-d99a-4243-ba15-1fe8593487a8 0b5be141d31dd3e9480afd106e4e167a {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.WGS.N C3L-00581 CCRCC WGS blood_normal CPT0002780002 CPT0002780002.WholeGenome.RP-1303.bam 67649247463 BAM submitted_aligned CPTAC3 703f0a35-5acd-44fc-9bac-9174afc77d77 2c3c23e19702e73b3641b05cc10db911 {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00581.WGS.N.hg38 C3L-00581 CCRCC WGS blood_normal CPT0002780002 e9638496-3274-4e1b-b294-c8780236f749_gdc_realn.bam 100037637687 BAM harmonized CPTAC3 719061f9-20d5-428b-9615-9a6e3e092026 73c6b27fe9d31afb67ebfe82a7d6d178 {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00581.WGS.T C3L-00581 CCRCC WGS tumor CPT0007320009 CPT0007320009.WholeGenome.RP-1303.bam 63863521818 BAM submitted_aligned CPTAC3 46b1dfb7-bbff-4468-8422-97182dd5f6dc e799a9c3cf87d4139964f947372d749d {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.WGS.T.hg38 C3L-00581 CCRCC WGS tumor CPT0007320009 98006060-84ac-4906-b27b-6f95c0806ab4_gdc_realn.bam 94349859513 BAM harmonized CPTAC3 6651946e-d477-4929-81d8-4e7db9bf2f63 f3552146a1f9a1e4de89e4a546f1cd1b {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.WXS.A C3L-00581 CCRCC WXS tissue_normal CPT0007470009 CPT0007470009.WholeExome.RP-1303.bam 34833958680 BAM submitted_aligned CPTAC3 823443aa-3aca-4661-bdf5-d5b38f762f12 c6445763da4beb0b78eabd3c9b3e7a8e {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.WXS.A.hg38 C3L-00581 CCRCC WXS tissue_normal CPT0007470009 4f72a152-448d-4036-8ddb-a12576e7689c_wxs_gdc_realn.bam 47035802866 BAM harmonized CPTAC3 aa4ff124-2936-406e-bc5d-f74f82104810 c64592fcf86452b9e5ccca30c6c81e65 {"aliquot_tag": "ALQ_8d0d47e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00581.WXS.N C3L-00581 CCRCC WXS blood_normal CPT0002780002 CPT0002780002.WholeExome.RP-1303.bam 23676576506 BAM submitted_aligned CPTAC3 c6278968-ad2c-4f0d-baab-ccd25027a487 a73a85989072b413bf9c7f1ffa308f7a {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00581.WXS.N.hg38 C3L-00581 CCRCC WXS blood_normal CPT0002780002 e9638496-3274-4e1b-b294-c8780236f749_gdc_realn.bam 32109620470 BAM harmonized CPTAC3 4d6619b0-b9a1-409b-ada3-8331aa643148 454b01a056dbaed814a55dea3bb30a41 {"aliquot_tag": "ALQ_4c2354b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00581.WXS.T C3L-00581 CCRCC WXS tumor CPT0007320009 CPT0007320009.WholeExome.RP-1303.bam 26336411594 BAM submitted_aligned CPTAC3 68cf7a29-11e8-4715-bf81-d0f74367a928 2264b202957ed716f5b5cb18404b48e2 {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00581.WXS.T.hg38 C3L-00581 CCRCC WXS tumor CPT0007320009 98006060-84ac-4906-b27b-6f95c0806ab4_gdc_realn.bam 35804199649 BAM harmonized CPTAC3 4575fae3-b4ec-48c7-bfa4-db21f199403d 2a4dfc0dff76cb0776f412b67110b2d3 {"aliquot_tag": "ALQ_58e8f829", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_3b95fef1.MethArray.Green.T C3L-00583 CCRCC Methylation_Array tumor CPT0019150009 204372030071_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 9d1393b4-e23d-408c-8581-6fb605e189a2 423ed5ab13ca0ed22c768cfbeeeb76f6 {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_3b95fef1.MethArray.Red.T C3L-00583 CCRCC Methylation_Array tumor CPT0019150009 204372030071_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 4c5abb20-9bac-4c45-a828-a93f077c1e61 9e868f134b686c049b3fefe443d115e9 {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_3b95fef1.WGS.T C3L-00583 CCRCC WGS tumor CPT0019150009 CPT0019150009.WholeGenome.RP-2158.bam 28113681043 BAM submitted_aligned CPTAC3 bbb4eab6-e948-4507-91d6-1f968303c008 42a32e5ac72b0e5f36d031f82157245f {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_3b95fef1.WGS.T.hg38 C3L-00583 CCRCC WGS tumor CPT0019150009 9da9d6ff-b3d1-4979-b01a-2e7dd1bcd56c_wgs_gdc_realn.bam 83373247014 BAM harmonized CPTAC3 54a4c2e2-bfe4-4aec-a262-0d09c4ec0f4c bdeeb3d3f3321fe8fd881895c6cdc5d4 {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_3b95fef1.WXS.T C3L-00583 CCRCC WXS tumor CPT0019150009 CPT0019150009.WholeExome.RP-1303.bam 21372716267 BAM submitted_aligned CPTAC3 cdafe1e5-1437-4924-9e93-0faf02b273fc 393e8d2decdfe4e3a62f79aeb227de7c {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_3b95fef1.WXS.T.hg38 C3L-00583 CCRCC WXS tumor CPT0019150009 9da9d6ff-b3d1-4979-b01a-2e7dd1bcd56c_wxs_gdc_realn.bam 28850499468 BAM harmonized CPTAC3 5d1ccd8c-840d-4ed0-a421-26c51ef2d5f3 e01b062b40a3254cdd8ec1ac6eb0d4ed {"aliquot_tag": "DUP_3b95fef1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_6f5d741.MethArray.Green.T C3L-00583 CCRCC Methylation_Array tumor CPT0019140009 204372030070_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d3d08696-407a-4430-9590-b59f0121027e 056699239512341c040d39d0737b4e87 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_6f5d741.MethArray.Red.T C3L-00583 CCRCC Methylation_Array tumor CPT0019140009 204372030070_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 eb56e239-f3f5-4065-abb3-0a81996ede35 8b415cfd4607e01d991794aa7900e44b {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_6f5d741.WGS.T C3L-00583 CCRCC WGS tumor CPT0019140009 CPT0019140009.WholeGenome.RP-2158.bam 23457207212 BAM submitted_aligned CPTAC3 a8c23a32-6c63-4e4a-bca8-d4fd93fe83f2 446ca43c0724f2115e56d7f86221226a {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_6f5d741.WGS.T.hg38 C3L-00583 CCRCC WGS tumor CPT0019140009 d199a60b-540c-4728-969b-c420123d9b5a_wgs_gdc_realn.bam 70543419930 BAM harmonized CPTAC3 71e41219-5f78-41e4-8ab6-661120ee29f2 510006ccdba557b7b74c61aa48c5cc48 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_6f5d741.WXS.T C3L-00583 CCRCC WXS tumor CPT0019140009 CPT0019140009.WholeExome.RP-1303.bam 22034496721 BAM submitted_aligned CPTAC3 ccf7a2b6-6ce6-4653-bd20-d18384a04550 90ef3b720efce1f1219e448cf8c133c5 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_6f5d741.WXS.T.hg38 C3L-00583 CCRCC WXS tumor CPT0019140009 d199a60b-540c-4728-969b-c420123d9b5a_wxs_gdc_realn.bam 30310903890 BAM harmonized CPTAC3 1958160c-c671-4316-94d3-40c01456b2cc c01fa2383419a07dfe4a873f8b5a7942 {"aliquot_tag": "DUP_6f5d741", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_964acad0.miRNA-Seq.S42_L003_R1.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019140006 200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L003_R1_001.unaln.bam 246108794 BAM S42_L003_R1 submitted_unaligned CPTAC3 16f5c677-61be-478c-8e3e-5d658758b0b0 6e76a0a72139ccc3aa4a3fa600efbf3e {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_964acad0.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019140006 9757abf8-c157-46d7-aeee-dee1c9c1f003_mirnaseq_gdc_realn.bam 275161502 BAM harmonized CPTAC3 9be2e859-6707-4097-918f-8feb8aa4cf97 621437246a1505f35d859a40a7d21473 {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_964acad0.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.chimeric.gdc_realn.bam 149458493 BAM chimeric harmonized CPTAC3 4b263828-9b49-4d95-ab22-685511f79e4f 88dc5b299aba7c7f40a3b8619a4449fc {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_964acad0.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.genomic.gdc_realn.bam 8812068645 BAM genomic harmonized CPTAC3 a1695654-9841-488f-bd5a-59b881865e6a 7dcfb94547a6c772528c14623f724f3c {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_964acad0.RNA-Seq.S4_L001_R1.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R1_001.fastq.gz 4048728879 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 7f6e3889-42d1-4447-bf21-d3f2c94ebbb6 33ea3660cb0e30f15fb30486eda4793e {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_964acad0.RNA-Seq.S4_L001_R2.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R2_001.fastq.gz 4821507032 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 11afe406-9c2c-4e80-bc9e-999e5496cb66 97cb6315a4eea5078ce7b8ca4c39f198 {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_964acad0.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.transcriptome.gdc_realn.bam 10659953048 BAM transcriptome harmonized CPTAC3 0329fde9-2871-4394-a1b3-6b11821427e3 3dca72b4bea6f4a38bd56fb698064bc7 {"aliquot_tag": "DUP_964acad0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_ab2ae360.miRNA-Seq.S40_L003_R1.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019150006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGATC_S40_L003_R1_001.unaln.bam 277857726 BAM S40_L003_R1 submitted_unaligned CPTAC3 374be261-8f0a-4a0b-8ae2-b969a0c2b6d2 e84109a9baca5d637d042769b998d914 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_ab2ae360.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019150006 8f9416f7-24c8-4625-b035-bfcdc7c5daa0_mirnaseq_gdc_realn.bam 304615087 BAM harmonized CPTAC3 63ed9909-c01e-4889-b050-d7e975578b7e 8b6edc962c879f545d5670d2a5629c6c {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_ab2ae360.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.chimeric.gdc_realn.bam 96418205 BAM chimeric harmonized CPTAC3 e86d067d-5f63-44c8-8cac-c4e94ac9c962 74f87ffc6829d40748ef3229d0413348 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_ab2ae360.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.genomic.gdc_realn.bam 7754072494 BAM genomic harmonized CPTAC3 891630fd-e853-4dcc-8bb8-a68fadec7a6b 2f3a020b372a653f43fe1771850ab74e {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_ab2ae360.RNA-Seq.S1_L001_R1.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3425522215 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 d82386c1-ec69-4e98-a2f7-c25a703e1ce5 939af7cdbcdef5a099294735758deb93 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_ab2ae360.RNA-Seq.S1_L001_R2.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4130070234 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 001a222e-33a9-4117-a953-f7aa168ca968 8c0691f41290dc89209c91c462b86027 {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.DUP_ab2ae360.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.transcriptome.gdc_realn.bam 9834417639 BAM transcriptome harmonized CPTAC3 742f20cc-5f72-4bea-a6b5-9f2015de4745 699a77a86db019dee2ffcbfcc721471a {"aliquot_tag": "DUP_ab2ae360", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.MethArray.Green.A C3L-00583 CCRCC Methylation_Array tissue_normal CPT0019160009 204930640042_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e89e2788-674a-42ac-a292-0ce4179eefd5 8357e3905cc4b13b1c279f7cf94b4e87 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.MethArray.Green.T C3L-00583 CCRCC Methylation_Array tumor CPT0019130006 202178770109_R01C01_Grn.idat 13676233 IDAT Green NA CPTAC3 aa57cb7a-fd7f-48cf-bed7-97aa62cd11a5 ee9a74dd1f66a6d50e00f045b0bc2f0b {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.MethArray.Red.A C3L-00583 CCRCC Methylation_Array tissue_normal CPT0019160009 204930640042_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 30a02a5c-f87c-4f51-8ff6-9998260fbc99 69b8cc711368c780e20b72b58e0bbc05 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.MethArray.Red.T C3L-00583 CCRCC Methylation_Array tumor CPT0019130006 202178770109_R01C01_Red.idat 13676233 IDAT Red NA CPTAC3 41224284-2f94-4a27-abf9-29046edaf51e 5187fc1c511c776e7e5a0209237006c2 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.miRNA-Seq.A.hg38 C3L-00583 CCRCC miRNA-Seq tissue_normal CPT0019160006 63ead94e-d2a2-4cd3-a3a4-4b853f3f0491_mirnaseq_gdc_realn.bam 206650982 BAM harmonized CPTAC3 d75baaa6-3c41-45f8-b0e7-80a5900133fb 1b29800f375be481fe4b8843b2615835 {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.miRNA-Seq.S21_L004_R1.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019130009 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L004_R1_001.unaln.bam 200595190 BAM S21_L004_R1 submitted_unaligned CPTAC3 ed987edd-f4d5-4cfd-a391-d29d6c258afa a833477d306f86f1a1f9a69a1e67e16b {"aliquot_tag": "ALQ_b4d50b51", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.miRNA-Seq.S45_L004_R1.A C3L-00583 CCRCC miRNA-Seq tissue_normal CPT0019160006 181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L004_R1_001.unaln.bam 184482783 BAM S45_L004_R1 submitted_unaligned CPTAC3 60aa4c60-4495-48b4-bec4-bc9e8891931d 429b5d79f3bcf5895889d29c88d89541 {"aliquot_tag": "ALQ_ec8a99b0", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019130009 4f9f39c4-3d9a-4195-b6da-062c6869ea6f_mirnaseq_gdc_realn.bam 225848387 BAM harmonized CPTAC3 fecf2330-db5c-4a44-9943-9c23f9ccb4ff a8c9f8b1bbbaacd5f57d8e2a689c1d75 {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.RNA-Seq.chimeric.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.chimeric.gdc_realn.bam 114921560 BAM chimeric harmonized CPTAC3 8a82f76a-18bf-4bae-8530-89f6fe04a9d9 54145ddee3982281fdbbb8dfdac816cd {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.chimeric.gdc_realn.bam 131311013 BAM chimeric harmonized CPTAC3 807eca27-b105-4d9b-800b-8be148151901 72ec0e118193b466a7e2cf091ecdb718 {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.RNA-Seq.genomic.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.genomic.gdc_realn.bam 7261744127 BAM genomic harmonized CPTAC3 2827be6f-1597-4bb0-866c-81aea91ddd5e 2d3ff311eb9c6d30a1de31b7dd42dac2 {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.genomic.gdc_realn.bam 7589276581 BAM genomic harmonized CPTAC3 95dbe33a-0639-47bb-9049-19879f488840 3934cc22fdddc955298de417bb154529 {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.RNA-Seq.S19_L005_R1.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R1_001.fastq.gz 4073385982 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 3a6ea7b6-610e-4afa-9c10-d9019533a96b 520f1dce87b9651df7edad2c7c17b4eb {"aliquot_tag": "ALQ_b4d50b51", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.RNA-Seq.S19_L005_R2.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R2_001.fastq.gz 4392441326 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 0bb2dca8-6956-4024-ae6c-1a26c1fbf9f8 d3c9881903c1617289b4d94e3b7e6f9d {"aliquot_tag": "ALQ_b4d50b51", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.RNA-Seq.S8_L008_R1.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R1_001.fastq.gz 3519064040 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 5864effa-7bb3-434f-84ab-b726d8db1631 6407caaf67fd48f8a93e442e04c672a4 {"aliquot_tag": "ALQ_ec8a99b0", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.RNA-Seq.S8_L008_R2.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R2_001.fastq.gz 3934223727 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 bd0af26a-a13b-44ab-ae7d-26b25afd8513 bd92d11a61286f57347c96255d234a80 {"aliquot_tag": "ALQ_ec8a99b0", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.RNA-Seq.transcriptome.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.transcriptome.gdc_realn.bam 8486065405 BAM transcriptome harmonized CPTAC3 28c945cc-0059-43ff-829c-21176eddb47c 86b88dbd57f82af0eb7701dbca89af1f {"aliquot_tag": "ALQ_ec8a99b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.transcriptome.gdc_realn.bam 10339106718 BAM transcriptome harmonized CPTAC3 bec9103d-ed3d-4dc7-8651-8332221bd91c f2fdf8380ea79d348053bc288c6d082f {"aliquot_tag": "ALQ_b4d50b51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.WGS.A C3L-00583 CCRCC WGS tissue_normal CPT0019160009 CPT0019160009.WholeGenome.RP-1303.bam 76664662790 BAM submitted_aligned CPTAC3 2d7d2c03-e0a9-4020-be02-31a21d2118b7 842c1d69e581e83f778aa5158f292737 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.WGS.A.hg38 C3L-00583 CCRCC WGS tissue_normal CPT0019160009 9571ffd8-b1a8-4dc1-b1c8-e1fbe142cd15_wgs_gdc_realn.bam 112564806221 BAM harmonized CPTAC3 9481a533-44e9-45fc-b810-8e085953bbab f32ac3625d3b874bf93bdb980fe0200b {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.WGS.N C3L-00583 CCRCC WGS blood_normal CPT0019900002 CPT0019900002.WholeGenome.RP-1303.bam 61166932059 BAM submitted_aligned CPTAC3 589e7423-30d2-4238-baa3-158e055530ab d63042afad42dc387f068326fac12619 {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00583.WGS.N.hg38 C3L-00583 CCRCC WGS blood_normal CPT0019900002 4f7cf63d-7f7d-4b92-9616-d101839c5d0f_gdc_realn.bam 89075574047 BAM harmonized CPTAC3 2a23721a-3371-43b1-a4e8-6dd5b9aa75b2 b2ead1681c0b90bf00d7cef2ae1f6f1e {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00583.WGS.T C3L-00583 CCRCC WGS tumor CPT0019130006 CPT0019130006.WholeGenome.RP-1303.bam 62352400634 BAM submitted_aligned CPTAC3 40deb190-daac-4dec-97de-5840d0acdc68 6f13002fd4d2663ca11b8204e93994d8 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.WGS.T.hg38 C3L-00583 CCRCC WGS tumor CPT0019130006 b95aa1d8-289e-4fb5-8a7c-362ab610d931_gdc_realn.bam 90342462108 BAM harmonized CPTAC3 19ef21ed-ca14-4061-9228-e6fa1867841d f2c7bc31af2bba590dc2bcb5c0f3822f {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.WXS.A C3L-00583 CCRCC WXS tissue_normal CPT0019160009 CPT0019160009.WholeExome.RP-1303.bam 32173740433 BAM submitted_aligned CPTAC3 67779285-40bc-40b1-ba7d-4725272b0ae2 742f670f72d27348d1b4566a9a28f3f1 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.WXS.A.hg38 C3L-00583 CCRCC WXS tissue_normal CPT0019160009 9571ffd8-b1a8-4dc1-b1c8-e1fbe142cd15_wxs_gdc_realn.bam 43625085913 BAM harmonized CPTAC3 a9ca8a70-ba12-471d-847c-aaabd73f64ea e71a098b37ee36f5ed718171fada93b7 {"aliquot_tag": "ALQ_7c358421", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00583.WXS.N C3L-00583 CCRCC WXS blood_normal CPT0019900002 CPT0019900002.WholeExome.RP-1303.bam 28002865273 BAM submitted_aligned CPTAC3 ee030029-dc14-42ec-93f5-33a36af3c0c1 3c004991637a98e98ae1c8a61925248e {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00583.WXS.N.hg38 C3L-00583 CCRCC WXS blood_normal CPT0019900002 4f7cf63d-7f7d-4b92-9616-d101839c5d0f_gdc_realn.bam 38153859823 BAM harmonized CPTAC3 45d0d4d7-49d7-4693-b792-03bd82f50105 d62722e2c44d984858e1033c8fb761f1 {"aliquot_tag": "ALQ_88f42a64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00583.WXS.T C3L-00583 CCRCC WXS tumor CPT0019130006 CPT0019130006.WholeExome.RP-1303.bam 36543232034 BAM submitted_aligned CPTAC3 7a0d6fcc-f152-4926-b209-8c18dc2fc2fb 35e5096485dec8031968a67d82e07bb1 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00583.WXS.T.hg38 C3L-00583 CCRCC WXS tumor CPT0019130006 b95aa1d8-289e-4fb5-8a7c-362ab610d931_gdc_realn.bam 49483675931 BAM harmonized CPTAC3 2d63999a-b9eb-4a93-8f09-bb3df487f938 31cff4b066215643b9fe55e7dee28b39 {"aliquot_tag": "ALQ_246a16c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.MethArray.Green.T C3L-00586 UCEC Methylation_Array tumor CPT0023630006 202163550076_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 16464daf-4e9f-452a-bd44-708658e30f26 bf8cae4e6e35e2598122bd9ecf73ad33 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.MethArray.Red.T C3L-00586 UCEC Methylation_Array tumor CPT0023630006 202163550076_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 476434a3-bffb-43a0-ae51-1b2c73068b84 bbc8ae42753ba8cf62dcda200b236c00 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.miRNA-Seq.A.hg38 C3L-00586 UCEC miRNA-Seq tissue_normal CPT0023640006 39db0f0c-f022-4ba4-a268-6327645f7383_mirnaseq_gdc_realn.bam 277245387 BAM harmonized CPTAC3 cac3c813-2733-4dee-ae4c-033618c99669 b9f2565a5bdd8976694c21ddb791b5b7 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.miRNA-Seq.S43_L004_R1.T C3L-00586 UCEC miRNA-Seq tumor CPT0023630009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGAAA_S43_L004_R1_001.unaln.bam 310023797 BAM S43_L004_R1 submitted_unaligned CPTAC3 1897e24d-5eb1-4d93-b599-95b1bfbf3347 f5a936b1578b9c98c47262934ef7ed01 {"aliquot_tag": "ALQ_832f6344", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.miRNA-Seq.S6_L006_R1.A C3L-00586 UCEC miRNA-Seq tissue_normal CPT0023640006 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L006_R1_001.unaln.bam 246461781 BAM S6_L006_R1 submitted_unaligned CPTAC3 2285e7c0-8bdf-4039-8e8c-5b6b941e8148 e44a4f4478f5851d200f3fc16f1bf54b {"aliquot_tag": "ALQ_a1b0a2c5", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.miRNA-Seq.T.hg38 C3L-00586 UCEC miRNA-Seq tumor CPT0023630009 66c5443c-007d-42ff-9e84-68e6473416b1_mirnaseq_gdc_realn.bam 335633123 BAM harmonized CPTAC3 55f401cd-35a4-4de7-b73f-dd597cfd1b42 132dd65025fd08fdec666abb4baca5ea {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.chimeric.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.chimeric.gdc_realn.bam 168393348 BAM chimeric harmonized CPTAC3 d6a53639-3df2-48b4-8430-ac4bfa41ed01 6834b22a164047a4f0fe5eede5f5e837 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.RNA-Seq.chimeric.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.chimeric.gdc_realn.bam 103948340 BAM chimeric harmonized CPTAC3 5b44a7ab-546e-40c0-aad5-5dd4029d6845 b9a7becce210d89c78aa3eeeb7598531 {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.chimeric.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.chimeric.gdc_realn.bam 121934112 BAM chimeric harmonized CPTAC3 dc825739-c43e-4b9a-be2c-1a8d34cb159e ab3e99a3a18e8baccfa59cd2bf858c6d {"aliquot_tag": "ALQ_1d3a52df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.genomic.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.genomic.gdc_realn.bam 9073448496 BAM genomic harmonized CPTAC3 31baf514-c47c-4ebe-9fe3-f00b350b3193 4ec7675e89120d7c789c25fbf807a535 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.RNA-Seq.genomic.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.genomic.gdc_realn.bam 11724071805 BAM genomic harmonized CPTAC3 fe18b968-a91e-4eb3-bcba-8dd78c0c36d0 85fb4266d79abae44c3135d2aa1d74e3 {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.genomic.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.genomic.gdc_realn.bam 6416251513 BAM genomic harmonized CPTAC3 28f4ad82-e1ac-4968-b9af-3bd1aeaedabd 5683010182dda572ee0e7c40e2126bb5 {"aliquot_tag": "ALQ_1d3a52df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.S23_L008_R1.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R1_001.fastq.gz 5533994865 FASTQ S23_L008_R1 submitted_unaligned CPTAC3 20fcc809-dcdf-46c5-b40d-c1aa39c6791c 1f1a892b356db123b29f304287a4c339 {"aliquot_tag": "ALQ_832f6344", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.S23_L008_R2.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R2_001.fastq.gz 5988626529 FASTQ S23_L008_R2 submitted_unaligned CPTAC3 e731e945-44ae-4179-9672-a2a6a1fb2d94 81acbdadeb4a5aa1ae3674a58a26d710 {"aliquot_tag": "ALQ_832f6344", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.S3_R1.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R1_001.fastq.gz 3653714781 FASTQ S3_R1 submitted_unaligned CPTAC3 dde1a646-97dc-4db7-9765-daffe2080a3b a26d5f1b63e9c3926b60494c67287416 {"aliquot_tag": "ALQ_1d3a52df", "sample": "S3", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.S3_R2.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R2_001.fastq.gz 3775461393 FASTQ S3_R2 submitted_unaligned CPTAC3 8d4f92c4-9b34-48a5-ba92-c6f42ee61a11 821bda2fe423a3a5f8663065e34a05a7 {"aliquot_tag": "ALQ_1d3a52df", "sample": "S3", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.S7_L002_R1.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R1_001.fastq.gz 4142046687 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 52d135b5-6065-44c4-abc4-8245ce9694dd d380b254083dc3daad6ab5c8f32c91c5 {"aliquot_tag": "ALQ_a1b0a2c5", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.RNA-Seq.S7_L002_R2.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R2_001.fastq.gz 4623538411 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 9509bda6-905c-4583-b31a-debc0d5afc82 55b3285d91c377c273a68685fc969b29 {"aliquot_tag": "ALQ_a1b0a2c5", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.RNA-Seq.transcriptome.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.transcriptome.gdc_realn.bam 11122359889 BAM transcriptome harmonized CPTAC3 8db5bd40-0272-44b1-89f6-e2303b3f37f2 6ff54b978098d89227e5a78917b1ff02 {"aliquot_tag": "ALQ_a1b0a2c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.RNA-Seq.transcriptome.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.transcriptome.gdc_realn.bam 14974390499 BAM transcriptome harmonized CPTAC3 9bf7478e-be0d-4f4b-b630-ed80ed56c5ac 70fba5c453c409e4e75f8c2b65d27772 {"aliquot_tag": "ALQ_832f6344", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.RNA-Seq.transcriptome.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.transcriptome.gdc_realn.bam 3369515099 BAM transcriptome harmonized CPTAC3 770ab7f5-1730-4b63-bf9f-198462a38a36 f972f0ca027903947182874767a63b71 {"aliquot_tag": "ALQ_1d3a52df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.WGS.A C3L-00586 UCEC WGS tissue_normal CPT0023640009 CPT0023640009.WholeGenome.RP-1303.bam 50162386928 BAM submitted_aligned CPTAC3 ad055a5d-4a2d-476d-8945-6e83f747e9dc a8eabb88294b5f2ff805893f08c6d914 {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.WGS.A.hg38 C3L-00586 UCEC WGS tissue_normal CPT0023640009 6e12c1b5-5971-498b-b545-11e58f92afb9_wgs_gdc_realn.bam 74648740747 BAM harmonized CPTAC3 9f9384d6-fd9c-474b-82bb-db9843d45ba9 8b2451a2ddd87865a42da069c1c788ba {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.WGS.N C3L-00586 UCEC WGS blood_normal CPT0024590002 CPT0024590002.WholeGenome.RP-1303.bam 59347229383 BAM submitted_aligned CPTAC3 e6c394c5-bd99-43eb-9173-e887562dfef5 157e483d8e1e98f1316bc2ad48eb620b {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00586.WGS.N.hg38 C3L-00586 UCEC WGS blood_normal CPT0024590002 dde47804-86f0-4b49-b448-483e4353bc22_gdc_realn.bam 88150461300 BAM harmonized CPTAC3 cf887209-91e9-4a98-af3f-1559013596d4 025fa64a3c49a62d2990ab81d2a0f2d3 {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00586.WGS.T C3L-00586 UCEC WGS tumor CPT0023630006 CPT0023630006.WholeGenome.RP-1303.bam 72184465010 BAM submitted_aligned CPTAC3 0fe6067d-830a-4ebc-946e-5e5b0fb32676 8bf01992f360dcd980da3add414f549e {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.WGS.T.hg38 C3L-00586 UCEC WGS tumor CPT0023630006 c14109ad-a867-4f58-9e70-a7575597416a_gdc_realn.bam 104524961688 BAM harmonized CPTAC3 e9d15bfb-5cca-4f62-9cd6-247f8fe3e58e de3f790a1d34b6e06ac79138e699fbd1 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.WXS.A C3L-00586 UCEC WXS tissue_normal CPT0023640009 CPT0023640009.WholeExome.RP-1303.bam 31464314483 BAM submitted_aligned CPTAC3 47569a7d-ed81-43d4-a3c5-140e37165f41 56d171a8f641971f7f7f0a05bf1bed75 {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.WXS.A.hg38 C3L-00586 UCEC WXS tissue_normal CPT0023640009 6e12c1b5-5971-498b-b545-11e58f92afb9_wxs_gdc_realn.bam 42402953802 BAM harmonized CPTAC3 3992451b-f2a3-41cb-8a4f-8134032c777b 521bcc44220e60b2d462a698e24ec56d {"aliquot_tag": "ALQ_310fbf54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00586.WXS.N C3L-00586 UCEC WXS blood_normal CPT0024590002 CPT0024590002.WholeExome.RP-1303.bam 34268093947 BAM submitted_aligned CPTAC3 e36f3c86-e8e1-4391-92b7-e14d1e29a5f9 54a0d0adc84e00d33a41973e8152a7c1 {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00586.WXS.N.hg38 C3L-00586 UCEC WXS blood_normal CPT0024590002 dde47804-86f0-4b49-b448-483e4353bc22_gdc_realn.bam 46806822969 BAM harmonized CPTAC3 38df11e7-4962-4828-a4bb-556f360d21a3 14ee29efd0104f42472db8052f54b0e1 {"aliquot_tag": "ALQ_1d7eee4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00586.WXS.T C3L-00586 UCEC WXS tumor CPT0023630006 CPT0023630006.WholeExome.RP-1303.bam 26408536780 BAM submitted_aligned CPTAC3 785195c2-a137-4e95-8edc-3a97b61a1086 22ffe5ce44035bb37801408a432eb86f {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00586.WXS.T.hg38 C3L-00586 UCEC WXS tumor CPT0023630006 c14109ad-a867-4f58-9e70-a7575597416a_gdc_realn.bam 36358025676 BAM harmonized CPTAC3 8cf50c93-9dec-4515-82a7-1959f8e7f312 0df2e79d2802f099b337105363144c74 {"aliquot_tag": "ALQ_13907ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.MethArray.Green.A C3L-00589 PDA Methylation_Array tissue_normal CPT0063990009 203561620008_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9635a7dd-06ee-422e-8e00-d51bf5dd177d 656e2b0e8efcfe53d69d4016faa7e524 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.MethArray.Green.T C3L-00589 PDA Methylation_Array tumor CPT0063970007 202178770045_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 226c5a80-19f6-4d60-8f24-e81ededbcc47 a97d19bf8240a11647c6b109ce8bb058 {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.MethArray.Red.A C3L-00589 PDA Methylation_Array tissue_normal CPT0063990009 203561620008_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 9f8c17e6-572e-4874-b1f7-2cd589f9f0d6 5b89dabdf503b574dd0001707571187e {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.MethArray.Red.T C3L-00589 PDA Methylation_Array tumor CPT0063970007 202178770045_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 4fc435bf-4edd-4ff8-ae5d-60371b6bd147 5297ece86c0d672a511dcff0f795105f {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.miRNA-Seq.A.hg38 C3L-00589 PDA miRNA-Seq tissue_normal CPT0063990006 34aca5db-215b-4947-a043-6b063cb678ed_mirnaseq_gdc_realn.bam 216535930 BAM harmonized CPTAC3 0bcfbfc8-5d7e-4a85-8615-acd85710f533 ff6576e0dc36fb4be1bfdbb8490b498b {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.miRNA-Seq.S2_L001_R1.A C3L-00589 PDA miRNA-Seq tissue_normal CPT0063990006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 193572330 BAM S2_L001_R1 submitted_unaligned CPTAC3 3db49927-0fda-404f-a2e9-895c7fa9c617 e7beac7c4de7fcee2b417da2fc321e2f {"aliquot_tag": "ALQ_2c3cda5b", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.miRNA-Seq.S6_L003_R1.T C3L-00589 PDA miRNA-Seq tumor CPT0063970010 180924_UNC31-K00269_0154_AHWTMLBBXX_ACTGAT_S6_L003_R1_001.unaln.bam 306383475 BAM S6_L003_R1 submitted_unaligned CPTAC3 ee7ef5aa-5078-4618-a6eb-368d49a14bb2 c5a40572c8230bbec6875aea8b52541a {"aliquot_tag": "ALQ_6374f04e", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.miRNA-Seq.T.hg38 C3L-00589 PDA miRNA-Seq tumor CPT0063970010 65ddf445-e8d9-4c52-8e5c-67db9f898552_mirnaseq_gdc_realn.bam 338589852 BAM harmonized CPTAC3 bda3f741-1069-4724-beeb-0157e95cea10 ef390fbce4128deebba58dc56b4b5321 {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.RNA-Seq.chimeric.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.chimeric.gdc_realn.bam 117160477 BAM chimeric harmonized CPTAC3 0ab98563-88c6-4552-9039-d5b9fcec8b31 51536bf993dfa57169146437310b49df {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.RNA-Seq.chimeric.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.chimeric.gdc_realn.bam 30370816 BAM chimeric harmonized CPTAC3 57b40172-2518-41af-88f3-f6bca7dd0a38 8bb8f17093d93ad67409eb15f023ec6b {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.RNA-Seq.genomic.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.genomic.gdc_realn.bam 11076734966 BAM genomic harmonized CPTAC3 844b9e56-f9d2-4cad-aceb-80901eb74db8 941d45c8bbd0b1c965875858015c366a {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.genomic.gdc_realn.bam 7969424398 BAM genomic harmonized CPTAC3 646b57e8-9099-4970-96f3-6bb438efed46 e0118a31cde7ae57ea5804e977d8ddee {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.RNA-Seq.S11_L008_R1.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R1_001.fastq.gz 5066238960 FASTQ S11_L008_R1 submitted_unaligned CPTAC3 20d32d65-582a-4620-9c43-d2c7c245f584 f635942b6249b75a9667b01cf0c4dbd6 {"aliquot_tag": "ALQ_2c3cda5b", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.RNA-Seq.S11_L008_R2.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R2_001.fastq.gz 5740435397 FASTQ S11_L008_R2 submitted_unaligned CPTAC3 e4b1dbfa-3713-4c5e-9087-bbbcc1a51f54 5d0bdccf6ce6d88047dd5dff816a49c8 {"aliquot_tag": "ALQ_2c3cda5b", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.RNA-Seq.S24_L007_R1.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R1_001.fastq.gz 3920592967 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 9568d5b0-fb1c-47bc-bd22-e13e816f7a8d aa64764cda2e8edd6d9fa870090b7eca {"aliquot_tag": "ALQ_6374f04e", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.RNA-Seq.S24_L007_R2.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R2_001.fastq.gz 4141977042 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 da2c3763-55e0-4d4b-91d0-d0af716be826 6bbc74adb697094eeec86537597a25a6 {"aliquot_tag": "ALQ_6374f04e", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.RNA-Seq.transcriptome.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.transcriptome.gdc_realn.bam 12734282428 BAM transcriptome harmonized CPTAC3 8e0d9431-8e80-4b20-98ec-9df468109050 a0ff6bb2ca57373daacc797f5c83cd58 {"aliquot_tag": "ALQ_2c3cda5b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.RNA-Seq.transcriptome.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.transcriptome.gdc_realn.bam 11273775063 BAM transcriptome harmonized CPTAC3 32c47da8-0a84-496c-b4d9-4406b0be1964 7acadc097c55c05c75dd33688023a0d3 {"aliquot_tag": "ALQ_6374f04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.Targeted.T C3L-00589 PDA Targeted_Sequencing tumor CPT0063970007_1 CPT0063970007_1.CustomSelection.RP-1303.PDO-18786.bam 3329150514 BAM submitted_aligned CPTAC3 e429d415-c23f-4f61-bedc-18b5abb254ca 5643d6379852be7e6b11f629252ae5a3 {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.Targeted.T.hg38 C3L-00589 PDA Targeted_Sequencing tumor CPT0063970007_1 c8fdda8f-39ff-4740-b59c-7e680c4cb6a6_targetedsequencing_gdc_realn.bam 4646829639 BAM harmonized CPTAC3 86774abd-20af-4921-8059-1af1d566d1ca b12f8970e683fd44867add30ba995122 {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.WGS.A C3L-00589 PDA WGS tissue_normal CPT0063990009 CPT0063990009.WholeGenome.RP-1303.bam 79594847985 BAM submitted_aligned CPTAC3 597ef470-4073-40cc-9698-7e377d794fcb fc0def8beb2d4819cec23984dd032650 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.WGS.A.hg38 C3L-00589 PDA WGS tissue_normal CPT0063990009 02445bc7-10d8-415e-9f77-d527639fc06c_wgs_gdc_realn.bam 117123440776 BAM harmonized CPTAC3 36faf0bc-ac63-4994-b7b8-6788c21e3929 4266644834a9e70bd9c33fb061d58221 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.WGS.N C3L-00589 PDA WGS blood_normal CPT0065360002 CPT0065360002.WholeGenome.RP-1303.bam 80541019062 BAM submitted_aligned CPTAC3 5275aeef-4931-4bdb-98ee-331859d709d2 8bd07827f781972475f3ed34b3f02f87 {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00589.WGS.N.hg38 C3L-00589 PDA WGS blood_normal CPT0065360002 50495b8a-9bca-4f88-af7a-0d1181f82755_gdc_realn.bam 120115071198 BAM harmonized CPTAC3 0de0ca38-c970-40f3-aaab-4ef901ae99b1 9281af5d2e5a6a3aa278155dc8e1e565 {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00589.WGS.T C3L-00589 PDA WGS tumor CPT0063970007 CPT0063970007.WholeGenome.RP-1303.bam 67416487416 BAM submitted_aligned CPTAC3 2a1e0872-1529-43f8-aada-91cbac684632 9e5004e3ed1b5b79876b317f9abf445e {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.WGS.T.hg38 C3L-00589 PDA WGS tumor CPT0063970007 2fe897e3-129e-4d02-a5b7-a4f3e64192e7_gdc_realn.bam 102089108537 BAM harmonized CPTAC3 af432ac5-46f8-410c-9c96-033ef6bfe7fb 4c15f417ed6ec29fcd3a3ad1d48775b1 {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.WXS.A C3L-00589 PDA WXS tissue_normal CPT0063990009 CPT0063990009.WholeExome.RP-1303.bam 22646558869 BAM submitted_aligned CPTAC3 af630119-9b67-40cc-8e5e-6d3212101aeb c34323933cb4b62afd5113aac87f4859 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.WXS.A.hg38 C3L-00589 PDA WXS tissue_normal CPT0063990009 02445bc7-10d8-415e-9f77-d527639fc06c_wxs_gdc_realn.bam 30106344707 BAM harmonized CPTAC3 e45855f7-c5ef-4799-85f3-a6335244e71c 54bac20517a5bcf7b0fd01d61a827b75 {"aliquot_tag": "ALQ_bc83c7ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00589.WXS.N C3L-00589 PDA WXS blood_normal CPT0065360002 CPT0065360002.WholeExome.RP-1303.bam 29641473014 BAM submitted_aligned CPTAC3 065c8563-cc7c-4eb3-8884-b7f3ccca0844 62c164f011d9b45021ae1cb5ec888e24 {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00589.WXS.N.hg38 C3L-00589 PDA WXS blood_normal CPT0065360002 50495b8a-9bca-4f88-af7a-0d1181f82755_gdc_realn.bam 39944725059 BAM harmonized CPTAC3 c8d751bc-3908-4a87-8bf0-ac3784679c3c 1bc5ff58dec6ec2396fc88b982a95aae {"aliquot_tag": "ALQ_6b4a9fcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00589.WXS.T C3L-00589 PDA WXS tumor CPT0063970007_1 CPT0063970007_1.WholeExome.RP-1303.bam 53049437912 BAM submitted_aligned CPTAC3 22101c10-0134-411d-a5eb-61dc7332eb01 69903b672acef07d0ea32d18d75fcdfe {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.WXS.T C3L-00589 PDA WXS tumor CPT0063970007 CPT0063970007.WholeExome.RP-1303.bam 30833898793 BAM submitted_aligned CPTAC3 7e206726-ceae-49f3-befd-0e9c2bd49fd7 7036bd38e9ada3a7361766714e48e88b {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.WXS.T.hg38 C3L-00589 PDA WXS tumor CPT0063970007_1 c8fdda8f-39ff-4740-b59c-7e680c4cb6a6_wxs_gdc_realn.bam 73216789844 BAM harmonized CPTAC3 c918ad1a-40ca-43d2-b62d-ee06f9fdd26b 4b6b835f1b19497c874108cf1f10db42 {"aliquot_tag": "ALQ_4390d15d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00589.WXS.T.hg38 C3L-00589 PDA WXS tumor CPT0063970007 2fe897e3-129e-4d02-a5b7-a4f3e64192e7_gdc_realn.bam 42564104477 BAM harmonized CPTAC3 a12a0e97-4198-4de8-a22f-975bd2ded771 c15fc20cef0db502ba6c8e96dfbd2edb {"aliquot_tag": "ALQ_e40b54ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.ADD_fe1f4067.MethArray.Green.T C3L-00598 PDA Methylation_Array tumor CPT0019410010 202176290087_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bfd09202-b7de-4dc2-b517-93ac3704cdc0 565233a4e78c733a4d08b83d90bd94cb {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.ADD_fe1f4067.MethArray.Red.T C3L-00598 PDA Methylation_Array tumor CPT0019410010 202176290087_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3fc12e75-d229-44ce-ad2f-4a7677130b7c 2cc8e25bde9c75a3c4012a601eb53aab {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.ADD_fe1f4067.WGS.T C3L-00598 PDA WGS tumor CPT0019410010 CPT0019410010.WholeGenome.RP-1303.bam 71635096016 BAM submitted_aligned CPTAC3 8d518512-f286-446f-bedd-d7ed0c48270f ad47c1d5d4f40dd01fbbc9c497e8fc1c {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.ADD_fe1f4067.WGS.T.hg38 C3L-00598 PDA WGS tumor CPT0019410010 e7c86c73-63a8-4e75-b394-56dc2c0179ba_gdc_realn.bam 104996631654 BAM harmonized CPTAC3 5b203921-5eb7-4ab0-812a-76fe5353f9ec 1eaa85d282a1ad87e295ee187c0d61d3 {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.ADD_fe1f4067.WXS.T C3L-00598 PDA WXS tumor CPT0019410010 CPT0019410010.WholeExome.RP-1303.bam 38655092119 BAM submitted_aligned CPTAC3 3f2557c9-3e7f-4e60-bb5a-da109d437f53 7b3f2a59412666abeb91f0a0f12e9583 {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.ADD_fe1f4067.WXS.T.hg38 C3L-00598 PDA WXS tumor CPT0019410010 e7c86c73-63a8-4e75-b394-56dc2c0179ba_gdc_realn.bam 53045937423 BAM harmonized CPTAC3 977a6e57-0ca0-406d-b961-25bc29db9892 b1c40b426da9e0f6e6da7301d1b7c29a {"aliquot_tag": "ADD_fe1f4067", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.miRNA-Seq.S28_L004_R1.T C3L-00598 PDA miRNA-Seq tumor CPT0019410007 181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L004_R1_001.unaln.bam 218737465 BAM S28_L004_R1 submitted_unaligned CPTAC3 e1b0bfa6-bd6c-4ef5-bb84-efe879bd137a 8a42191575df0ff644a06976b1e5cba5 {"aliquot_tag": "ALQ_7960e485", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.miRNA-Seq.T.hg38 C3L-00598 PDA miRNA-Seq tumor CPT0019410007 dd5f8bd8-28d2-4fa0-bb1c-a1ceb26dfd16_mirnaseq_gdc_realn.bam 241100929 BAM harmonized CPTAC3 aa0de3bf-a63e-47fa-a199-f7aedd595e78 9b395544649c5638c2ef24a3f51138b2 {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.RNA-Seq.chimeric.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.chimeric.gdc_realn.bam 149022815 BAM chimeric harmonized CPTAC3 2f7ac88a-ff1d-4a8c-927d-8a436bd1782d c6973a67ccbb54eda116966fbda722e1 {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.RNA-Seq.genomic.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.genomic.gdc_realn.bam 8756876389 BAM genomic harmonized CPTAC3 acf7d2f3-3a7a-4939-a445-cf292d6822cf c45a25d3beb3f6479547d588b2c89e71 {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.RNA-Seq.S20_L005_R1.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3989517240 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 b478f334-dfb5-454c-86c3-bd69233ba106 633a83d0222cf18da91a12013650618c {"aliquot_tag": "ALQ_7960e485", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.RNA-Seq.S20_L005_R2.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R2_001.fastq.gz 4073723122 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 53a54935-e290-42a5-89c8-d983987b1fc3 059b3e94d876321111b7d7d071eac367 {"aliquot_tag": "ALQ_7960e485", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.RNA-Seq.transcriptome.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.transcriptome.gdc_realn.bam 10459971965 BAM transcriptome harmonized CPTAC3 b71a8aba-8323-4cf3-89c8-6333ef777bbf eecf94b05ccb03fde23a22ccd49250bf {"aliquot_tag": "ALQ_7960e485", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.Targeted.T C3L-00598 PDA Targeted_Sequencing tumor CPT0019410010_1 CPT0019410010_1.CustomSelection.RP-1303.PDO-18786.bam 5006116430 BAM submitted_aligned CPTAC3 fe200a18-cf92-48b3-a015-fb15ef6cae61 49d691358a4694ef1782fa70d2c39ae8 {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.Targeted.T.hg38 C3L-00598 PDA Targeted_Sequencing tumor CPT0019410010_1 c9763f30-8938-4c73-92a6-5e77b6085e89_targetedsequencing_gdc_realn.bam 7121502495 BAM harmonized CPTAC3 31c7d17c-43b4-494b-a69e-b058ac2e159f c686fb9ca477836c80f722b549949b9f {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.WGS.N C3L-00598 PDA WGS blood_normal CPT0019480002 CPT0019480002.WholeGenome.RP-1303.bam 71276773943 BAM submitted_aligned CPTAC3 57076ebe-b082-4baf-a180-7f416902087f 80e61aaa3fd8632976ff748e5870fa73 {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00598.WGS.N.hg38 C3L-00598 PDA WGS blood_normal CPT0019480002 033ec902-7b53-4260-ba74-cc11cdd77e17_gdc_realn.bam 106296469741 BAM harmonized CPTAC3 3807504c-554a-47af-b7ee-49701c01149e 67efbde2d3bffc6c4204c991b68e429b {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00598.WXS.N C3L-00598 PDA WXS blood_normal CPT0019480002 CPT0019480002.WholeExome.RP-1303.bam 34380498573 BAM submitted_aligned CPTAC3 81afc6ee-6698-4a2f-85c9-c85c26344cb7 29618bf44f4cee47bbe8a789e6537d66 {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00598.WXS.N.hg38 C3L-00598 PDA WXS blood_normal CPT0019480002 033ec902-7b53-4260-ba74-cc11cdd77e17_gdc_realn.bam 47512661135 BAM harmonized CPTAC3 803693f4-1923-4561-9f4f-624c62297c8e 75e3bed948b3c2c1446fc75d84cee0f9 {"aliquot_tag": "ALQ_41a727b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00598.WXS.T C3L-00598 PDA WXS tumor CPT0019410010_1 CPT0019410010_1.WholeExome.RP-1303.bam 68863445948 BAM submitted_aligned CPTAC3 bfda8955-911d-4cb7-8346-631ef644dae4 771c776da1ee5807067825c839760027 {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00598.WXS.T.hg38 C3L-00598 PDA WXS tumor CPT0019410010_1 c9763f30-8938-4c73-92a6-5e77b6085e89_wxs_gdc_realn.bam 94693187035 BAM harmonized CPTAC3 45d3fb68-6f0b-4aca-97cc-dbe03f9e358c 63974b94802db980061422e7901c4e4a {"aliquot_tag": "ALQ_714411b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.MethArray.Green.T C3L-00599 PDA Methylation_Array tumor CPT0081260007 202176290087_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 aeea580a-33d4-405a-9bd9-def98a86b0eb 99710e7806b82789e51e4cd5bb376edc {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.MethArray.Red.T C3L-00599 PDA Methylation_Array tumor CPT0081260007 202176290087_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 baae18ce-4098-49e6-8389-17caca30b575 28347e0fdded074c0c8c6b53d4ac199a {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.miRNA-Seq.S48_L006_R1.T C3L-00599 PDA miRNA-Seq tumor CPT0081260010 181012_UNC32-K00270_0124_AH223CBBXY_CAACTA_S48_L006_R1_001.unaln.bam 271321177 BAM S48_L006_R1 submitted_unaligned CPTAC3 20a1ef7f-a834-47cc-ae3d-169c44b255b9 226793fcef93be5b8dde15d858b4b217 {"aliquot_tag": "ALQ_b6c62a26", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.miRNA-Seq.T.hg38 C3L-00599 PDA miRNA-Seq tumor CPT0081260010 ed4847ac-5fc9-4b1d-81bb-b798ce90451a_mirnaseq_gdc_realn.bam 298462902 BAM harmonized CPTAC3 1db9c07f-db5c-4576-9343-e1b51aeafe00 34282c71c83ab78d260836d30794ddb3 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.RNA-Seq.chimeric.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.chimeric.gdc_realn.bam 44165885 BAM chimeric harmonized CPTAC3 db3f8e3e-0c30-4800-bd24-7ea7c62b4c28 76ea7903175e79712240279b0063c844 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.RNA-Seq.genomic.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.genomic.gdc_realn.bam 9799687205 BAM genomic harmonized CPTAC3 ae55d6c0-8741-4174-a264-8c5cf58be624 fb759cc0f8e29e90dfd24e28ddc360e4 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.RNA-Seq.S3_L001_R1.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3985199647 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 1670ad87-2708-4ed6-998a-782e7b346522 8ada48b6960e0e7ddf8f9e33d8705724 {"aliquot_tag": "ALQ_b6c62a26", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.RNA-Seq.S3_L001_R2.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3906051021 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 fe9a475f-851e-4d88-be9e-cf0ef2922c26 6a8d0943dae3931916b9d96153b0a965 {"aliquot_tag": "ALQ_b6c62a26", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.RNA-Seq.transcriptome.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.transcriptome.gdc_realn.bam 9831050625 BAM transcriptome harmonized CPTAC3 a7688bd4-e8e6-4195-91f9-3ea5bf837f71 d9abef8f784d6885cce0384407c44d72 {"aliquot_tag": "ALQ_b6c62a26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.Targeted.T C3L-00599 PDA Targeted_Sequencing tumor CPT0081260007_1 CPT0081260007_1.CustomSelection.RP-1303.PDO-18786.bam 4218438220 BAM submitted_aligned CPTAC3 4df464fc-bc8c-425a-949b-9b58fe143232 b2db3fbd382174d3cb180d7be6e322af {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.Targeted.T.hg38 C3L-00599 PDA Targeted_Sequencing tumor CPT0081260007_1 4c871aba-34a3-4b82-b9b7-7c7222835d7e_targetedsequencing_gdc_realn.bam 6094548138 BAM harmonized CPTAC3 26914441-5bef-4c50-93be-105befa27651 64826df31873d5bbc9cb985c30f596f6 {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.WGS.N C3L-00599 PDA WGS blood_normal CPT0081300002 CPT0081300002.WholeGenome.RP-1303.bam 59708039220 BAM submitted_aligned CPTAC3 12fed749-9601-44f7-8ab4-2ec891747852 3ced23af3161035536c1bf3593efb434 {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00599.WGS.N.hg38 C3L-00599 PDA WGS blood_normal CPT0081300002 23d02b3d-196e-4443-a75d-76965c81e787_gdc_realn.bam 89858071093 BAM harmonized CPTAC3 7b27366f-9c9d-43e1-873e-ab01d605b5f2 adaae8a365d7d95e275d8068ac2d2daf {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00599.WGS.T C3L-00599 PDA WGS tumor CPT0081260007 CPT0081260007.WholeGenome.RP-1303.bam 66864571015 BAM submitted_aligned CPTAC3 5d9fc3d5-0809-4fca-9d11-9d7617cdb958 fecac4d7d8fa99f5ca0151e8ff1b3b1a {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.WGS.T.hg38 C3L-00599 PDA WGS tumor CPT0081260007 51283b99-0eb7-47d9-9d41-fa7f4cb436e3_gdc_realn.bam 100865493022 BAM harmonized CPTAC3 bd565946-5fb1-47e4-995a-3614448430ce db280394ceb4669d22de883ab2ff79e1 {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.WXS.N C3L-00599 PDA WXS blood_normal CPT0081300002 CPT0081300002.WholeExome.RP-1303.bam 24590974633 BAM submitted_aligned CPTAC3 363e78cb-9042-40ea-af48-98ac7510f897 afb3f8378f6bbbef61a95ce1c19de24f {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00599.WXS.N.hg38 C3L-00599 PDA WXS blood_normal CPT0081300002 23d02b3d-196e-4443-a75d-76965c81e787_gdc_realn.bam 32963736653 BAM harmonized CPTAC3 10d55ec9-51c2-4c00-8a95-0cb25ce09736 1cc4275d480f0ea2cfb807875c348c46 {"aliquot_tag": "ALQ_5cf5c4e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00599.WXS.T C3L-00599 PDA WXS tumor CPT0081260007_1 CPT0081260007_1.WholeExome.RP-1303.bam 53749566976 BAM submitted_aligned CPTAC3 d4b1298b-8b88-4965-b0ec-09d47f69f329 9c8d7a4a2cba605877e0137d55620986 {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.WXS.T C3L-00599 PDA WXS tumor CPT0081260007 CPT0081260007.WholeExome.RP-1303.bam 30380355011 BAM submitted_aligned CPTAC3 2ceaf724-4525-481a-877f-609c12aee1eb 39c5b225be69ff3a7371cf5fe889d3fc {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.WXS.T.hg38 C3L-00599 PDA WXS tumor CPT0081260007_1 4c871aba-34a3-4b82-b9b7-7c7222835d7e_wxs_gdc_realn.bam 74295194610 BAM harmonized CPTAC3 ea5a9dbb-2d2e-42ed-9b19-c89445a3f21f 70b0174a1e274031835dc04736e45889 {"aliquot_tag": "ALQ_88b2de8a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00599.WXS.T.hg38 C3L-00599 PDA WXS tumor CPT0081260007 51283b99-0eb7-47d9-9d41-fa7f4cb436e3_gdc_realn.bam 42058408107 BAM harmonized CPTAC3 870183f8-ca45-4eac-949b-eecbdf753098 28a7d87a972e65d2ea662bbd712bce50 {"aliquot_tag": "ALQ_31b98ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.MethArray.Green.T C3L-00601 UCEC Methylation_Array tumor CPT0007600009 202176290105_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 99ad091d-778b-4a83-9d04-ba38d826fcfc 5ad4b4047a5f3952ec641575954a0eab {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.MethArray.Red.T C3L-00601 UCEC Methylation_Array tumor CPT0007600009 202176290105_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 f58c4978-d966-4e3e-8dc3-9a72f12e09e0 0e58a8e9168ff2db9250d85bf0569622 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.miRNA-Seq.A.hg38 C3L-00601 UCEC miRNA-Seq tissue_normal CPT0007660006 24eba2cd-428c-4263-b2f2-2f95dda7e6e5_mirnaseq_gdc_realn.bam 283773517 BAM harmonized CPTAC3 50c8117d-52f4-43fa-a6fe-797d52e7a1e6 278d007828b921281fb4931b7054f076 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.miRNA-Seq.S48_L003_R1.T C3L-00601 UCEC miRNA-Seq tumor CPT0007600006 181113_UNC31-K00269_0164_AH23NNBBXY_GGTAGC_S48_L003_R1_001.unaln.bam 181182387 BAM S48_L003_R1 submitted_unaligned CPTAC3 4d9686f5-e9e7-4ff5-9b33-f822709bc24c 39fb32d8fe3536cfcb1d882bfe153d7a {"aliquot_tag": "ALQ_e25a276b", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.miRNA-Seq.S5_L006_R1.A C3L-00601 UCEC miRNA-Seq tissue_normal CPT0007660006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L006_R1_001.unaln.bam 247075747 BAM S5_L006_R1 submitted_unaligned CPTAC3 ce0603d7-3f18-473f-9fae-f9c8101b261b 0dfdfe98b7e1f895ca6d27b2aabd8ba9 {"aliquot_tag": "ALQ_6d1ad2cb", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.miRNA-Seq.T.hg38 C3L-00601 UCEC miRNA-Seq tumor CPT0007600006 d80b23ed-a7f0-43d1-8a9e-4de509d98f35_mirnaseq_gdc_realn.bam 213328191 BAM harmonized CPTAC3 e0388603-863a-4448-a1db-be4bdcc2950c 3e538817c7b9dbebf292b12a6b1d1587 {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.chimeric.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.chimeric.gdc_realn.bam 138542319 BAM chimeric harmonized CPTAC3 e7ae3bfb-9e89-493e-8ef4-37f9072c584d f415bc5bebd47138dc214b3ded6004e5 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.RNA-Seq.chimeric.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.chimeric.gdc_realn.bam 107771724 BAM chimeric harmonized CPTAC3 ff51f8ff-5e04-4cf2-89aa-674768ba7acf 48ef2f36b2f10af65a6ef2779b8f812b {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.chimeric.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.chimeric.gdc_realn.bam 257658952 BAM chimeric harmonized CPTAC3 e015c3a0-200c-4312-bae8-39088a1993a5 a1e90150a19cc8a4eea7cc8915427f20 {"aliquot_tag": "ALQ_927aa77f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.genomic.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.genomic.gdc_realn.bam 8386612191 BAM genomic harmonized CPTAC3 5d961309-ae14-4228-a315-0c04b8005a9e d1c9a3bfd4488cc2e9b20f877b72c105 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.RNA-Seq.genomic.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.genomic.gdc_realn.bam 9429485148 BAM genomic harmonized CPTAC3 a22a032f-103c-4026-8393-569d7d56e4ff c23021a489b01ecd6f2ce0222d873532 {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.genomic.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.genomic.gdc_realn.bam 13435270649 BAM genomic harmonized CPTAC3 ff63675f-842e-4157-bd94-bc780dd55259 af873bd1657c0bc656b5450f4d3ea616 {"aliquot_tag": "ALQ_927aa77f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.S1_L002_R1.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R1_001.fastq.gz 3897339245 FASTQ S1_L002_R1 submitted_unaligned CPTAC3 15a20d32-beec-4388-9408-480db8a1ae5c 198f7d591856745d7a7d9660bb53aa5b {"aliquot_tag": "ALQ_6d1ad2cb", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.RNA-Seq.S1_L002_R2.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R2_001.fastq.gz 4367574210 FASTQ S1_L002_R2 submitted_unaligned CPTAC3 0a6f5a3c-53aa-41bc-8c68-7292e1e6b059 93ec51764c583ad7281bc1af97329dcb {"aliquot_tag": "ALQ_6d1ad2cb", "sample": "S1", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.RNA-Seq.S28_R1.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R1_001.fastq.gz 8307203143 FASTQ S28_R1 submitted_unaligned CPTAC3 efdad6a9-6787-4090-9eb6-40245601335e 7409f60a570095ae3578cfdfb440a81d {"aliquot_tag": "ALQ_927aa77f", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.S28_R2.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R2_001.fastq.gz 8825931211 FASTQ S28_R2 submitted_unaligned CPTAC3 d770eafb-e72c-4d56-8fa6-cc53765fa121 aff055cd0e9b730f9b407d86cb0c1973 {"aliquot_tag": "ALQ_927aa77f", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.S3_L001_R1.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4913164581 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 01b9fd20-8317-4067-84cf-e73dd8f92572 450ddc92bde3596b8317a5694b57ca0c {"aliquot_tag": "ALQ_e25a276b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.S3_L001_R2.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 5086037699 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 5efbd40c-4225-4a7f-9920-71357ccf41f0 1c90821349388d77a2d021e3d0410ce6 {"aliquot_tag": "ALQ_e25a276b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.transcriptome.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.transcriptome.gdc_realn.bam 9753659626 BAM transcriptome harmonized CPTAC3 90ce20bf-da8b-4842-a2ad-2b4e7da06bc1 1c989897a2107477d2440a38a2d19414 {"aliquot_tag": "ALQ_6d1ad2cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.RNA-Seq.transcriptome.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.transcriptome.gdc_realn.bam 13528075856 BAM transcriptome harmonized CPTAC3 30b2de31-566e-459f-bdc5-cb078fc15f25 b59592731839207cb58bdc31e514d3c4 {"aliquot_tag": "ALQ_e25a276b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.RNA-Seq.transcriptome.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.transcriptome.gdc_realn.bam 8731304008 BAM transcriptome harmonized CPTAC3 55b1b78d-6322-406c-9a97-6b99e0490fde c5237fa65aba83e7c7e036a502f1122b {"aliquot_tag": "ALQ_927aa77f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.WGS.A C3L-00601 UCEC WGS tissue_normal CPT0007660009 CPT0007660009.WholeGenome.RP-1303.bam 65241355364 BAM submitted_aligned CPTAC3 92df9e4d-bf90-4d35-ab50-f64891082576 ab0573cde3749647d7d271b4db9f5f4f {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.WGS.A.hg38 C3L-00601 UCEC WGS tissue_normal CPT0007660009 babcb183-1b5a-4b68-b09f-636e02e71030_wgs_gdc_realn.bam 94440078384 BAM harmonized CPTAC3 1563405d-7781-4421-a33d-07a7a7b786a5 ed4e49de9d640dacce7a311e9eb11295 {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.WGS.N C3L-00601 UCEC WGS blood_normal CPT0002900002 CPT0002900002.WholeGenome.RP-1303.bam 68273223071 BAM submitted_aligned CPTAC3 b169fcff-1091-4d23-beac-c0c65f00ca3b a6665cc731f7d5d0bfbba98a7b677ba7 {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00601.WGS.N.hg38 C3L-00601 UCEC WGS blood_normal CPT0002900002 50c4a6f8-9efd-4898-a962-a7d89078b9b5_gdc_realn.bam 99301680248 BAM harmonized CPTAC3 db638288-3dbf-436b-8444-56185109f1eb 4fa2b0dca21259d933aeeccce03e4cba {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00601.WGS.T C3L-00601 UCEC WGS tumor CPT0007600009 CPT0007600009.WholeGenome.RP-1303.bam 59224492246 BAM submitted_aligned CPTAC3 11e21e56-f407-45c8-9fca-899fb716f2b9 972322f05deb20d84deb776696ffdfb4 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.WGS.T.hg38 C3L-00601 UCEC WGS tumor CPT0007600009 84ccff59-af29-4cbf-8068-185a2e2b4c1f_gdc_realn.bam 87876886198 BAM harmonized CPTAC3 50107236-d227-4b6c-bd75-b9e860965ea2 6aa823f7bfd6286e20f4d3fbf1db9480 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.WXS.A C3L-00601 UCEC WXS tissue_normal CPT0007660009 CPT0007660009.WholeExome.RP-1303.bam 31116065931 BAM submitted_aligned CPTAC3 31722bbb-0ebb-4e40-804b-a9727ba9fa0f d4e9f8a4ea21d27dd1edd4a7cbec0f13 {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.WXS.A.hg38 C3L-00601 UCEC WXS tissue_normal CPT0007660009 babcb183-1b5a-4b68-b09f-636e02e71030_wxs_gdc_realn.bam 42017521402 BAM harmonized CPTAC3 6cdc37c9-2e78-4d61-b4eb-9abdf5776b9f 40f6c9682bd1a8eff1849753e9dc9f60 {"aliquot_tag": "ALQ_fda5cf5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00601.WXS.N C3L-00601 UCEC WXS blood_normal CPT0002900002 CPT0002900002.WholeExome.RP-1303.bam 24996669333 BAM submitted_aligned CPTAC3 234078e6-2b21-40f4-8aaa-2c1815f20157 8ccabd22c56efd7c69e2d5ac334b19a8 {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00601.WXS.N.hg38 C3L-00601 UCEC WXS blood_normal CPT0002900002 50c4a6f8-9efd-4898-a962-a7d89078b9b5_gdc_realn.bam 34027249380 BAM harmonized CPTAC3 b7d63e3b-56bd-446b-a6ef-c6197ef84a94 9adf404f85ef02c987a96710a04a6d3b {"aliquot_tag": "ALQ_46597e00", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00601.WXS.T C3L-00601 UCEC WXS tumor CPT0007600009 CPT0007600009.WholeExome.RP-1303.bam 25918710266 BAM submitted_aligned CPTAC3 d301c51c-52e8-4809-a1d3-8bb27f19c81e 7887a751d4deaeb3abbf868a0da3c0fa {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00601.WXS.T.hg38 C3L-00601 UCEC WXS tumor CPT0007600009 84ccff59-af29-4cbf-8068-185a2e2b4c1f_gdc_realn.bam 35177354356 BAM harmonized CPTAC3 52aa202f-2d6e-4b6d-bbae-49bdda1d0f3c dd2ce9a3fd7157d1e95c88a36055de20 {"aliquot_tag": "ALQ_72e53afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.MethArray.Green.A C3L-00603 LSCC Methylation_Array tissue_normal CPT0064050006 203219650136_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f3e6f156-2550-4950-b182-a0de65046ae9 0e33443cbfa2013b77988a0db32bf596 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.MethArray.Green.T C3L-00603 LSCC Methylation_Array tumor CPT0064040006 202163550115_R07C01_Grn.idat 13676230 IDAT Green NA CPTAC3 21499507-cb1f-40b1-aa64-885336756fda cb955e88407091e48c58fc172423d70b {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.MethArray.Red.A C3L-00603 LSCC Methylation_Array tissue_normal CPT0064050006 203219650136_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 8aa81d0b-c932-4a4c-9d2f-b41cc1c3b292 7e1bb25ffdc4a3877a4a1aeaa000fd6f {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.MethArray.Red.T C3L-00603 LSCC Methylation_Array tumor CPT0064040006 202163550115_R07C01_Red.idat 13676230 IDAT Red NA CPTAC3 f0019c3b-62e1-4fc7-abcc-a0b6303bbf36 b080f96f0ac0982143460a85f2dd9cdb {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.miRNA-Seq.A.hg38 C3L-00603 LSCC miRNA-Seq tissue_normal CPT0064050008 fa76f1e8-4a30-48cc-8bf5-06f328bcb1c0_mirnaseq_gdc_realn.bam 189650830 BAM harmonized CPTAC3 d7a190c3-91ad-4c2d-bb5e-79dfd559cb50 a0b59084d732d62c9557e5c6d3cc513e {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.miRNA-Seq.S48_L005_R1.A C3L-00603 LSCC miRNA-Seq tissue_normal CPT0064050008 181113_UNC31-K00269_0164_AH23NNBBXY_GGTAGC_S48_L005_R1_001.unaln.bam 167243604 BAM S48_L005_R1 submitted_unaligned CPTAC3 279278d0-8715-4494-8998-f857e5086560 7b1217e124395d8c41ee280d331e61ba {"aliquot_tag": "ALQ_ecdc751b", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.miRNA-Seq.S5_L003_R1.T C3L-00603 LSCC miRNA-Seq tumor CPT0064040009 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGAGC_S5_L003_R1_001.unaln.bam 273129140 BAM S5_L003_R1 submitted_unaligned CPTAC3 6a5bb61d-b8d0-473a-ac95-62fe22f07645 d561ed2ce02583fbd2844d14bca1f786 {"aliquot_tag": "ALQ_a6bb6c3d", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.miRNA-Seq.T.hg38 C3L-00603 LSCC miRNA-Seq tumor CPT0064040009 0d922fb6-ea4b-49e3-86ec-9096d5e86e2e_mirnaseq_gdc_realn.bam 293327578 BAM harmonized CPTAC3 7027cc7f-3200-46d8-85d0-d62bdf2392a4 93066d8d2c237aa5e2e885e955cd850d {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.RNA-Seq.chimeric.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.chimeric.gdc_realn.bam 41461935 BAM chimeric harmonized CPTAC3 f3c3292b-a903-4ec5-a89f-3847df5e9d26 8905e7cccee9b586576d3b6c2f2cb9ef {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.RNA-Seq.chimeric.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.chimeric.gdc_realn.bam 26188212 BAM chimeric harmonized CPTAC3 cf34df7b-6a44-482f-9f78-e529e575608b 6af2f175855a383a4edb285008643d76 {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.RNA-Seq.genomic.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.genomic.gdc_realn.bam 8200830182 BAM genomic harmonized CPTAC3 06905783-17eb-4236-9812-4c3fa13ec96a 23e2056ec6cecbc5c48abf5aa5050ba8 {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.RNA-Seq.genomic.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.genomic.gdc_realn.bam 7429993065 BAM genomic harmonized CPTAC3 a2235e4f-a3d9-4963-9dff-8950500a01b8 98900a19207da2e516453ff207cd01c8 {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.RNA-Seq.S2_L007_R1.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R1_001.fastq.gz 3679179574 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 6da4e491-3134-4e63-bec0-2cf5c58e0e93 85684c46e8a20607be0f235de3fe41f9 {"aliquot_tag": "ALQ_a6bb6c3d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.RNA-Seq.S2_L007_R2.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R2_001.fastq.gz 3790870120 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 5481f05c-19c7-4ecc-803b-8e18a2e9aa0e 80abcba7c54824bdbbcd4e199f0cce5c {"aliquot_tag": "ALQ_a6bb6c3d", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.RNA-Seq.S7_L002_R1.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3835017783 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 73708fbb-5e14-4ca1-9560-e6e5cb912924 4718e447b824572ea597a3a0de48bcc0 {"aliquot_tag": "ALQ_ecdc751b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.RNA-Seq.S7_L002_R2.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4240580558 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 b44f5c79-6a5d-4639-ba5e-5111379cff8a bb9d7f25a6b78743b57b580adf7b6acd {"aliquot_tag": "ALQ_ecdc751b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.RNA-Seq.transcriptome.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.transcriptome.gdc_realn.bam 9760775911 BAM transcriptome harmonized CPTAC3 58f321bf-4c20-4f71-99e9-b6c59a77c9ab 9d59c6ce72b92190876e4b529a7f0246 {"aliquot_tag": "ALQ_ecdc751b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.RNA-Seq.transcriptome.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.transcriptome.gdc_realn.bam 9258228899 BAM transcriptome harmonized CPTAC3 297dad74-85be-497b-881d-44b82d8ec0ed e28e626695c4e2d0271ebb70c0faea8f {"aliquot_tag": "ALQ_a6bb6c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.WGS.A C3L-00603 LSCC WGS tissue_normal CPT0064050006 CPT0064050006.WholeGenome.RP-1303.bam 55338774934 BAM submitted_aligned CPTAC3 7c330c81-95f4-4935-998d-309923ba5806 9173d9386e60e9d85f622d7e8b92f234 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.WGS.A.hg38 C3L-00603 LSCC WGS tissue_normal CPT0064050006 123bd489-c6dc-474d-8516-cb98dec889bb_wgs_gdc_realn.bam 80462415116 BAM harmonized CPTAC3 9e0a1264-08b2-4675-ae8f-df54b2455b55 38ab881c3939353fda5f61aaf22dd490 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.WGS.N C3L-00603 LSCC WGS blood_normal CPT0065370002 CPT0065370002.WholeGenome.RP-1303.bam 72610587825 BAM submitted_aligned CPTAC3 b4510f9d-53bc-4694-a026-8b26ab0db182 c19f9ab1458201a1fe455b5273dc0e50 {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00603.WGS.N.hg38 C3L-00603 LSCC WGS blood_normal CPT0065370002 f36cc437-ce45-4922-84b4-ce0b89a29787_gdc_realn.bam 113637734370 BAM harmonized CPTAC3 e257e919-586e-4b59-a437-cf85f7302a0a 255dcfccbe2f4a5a7511fe33b9d2532b {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00603.WGS.T C3L-00603 LSCC WGS tumor CPT0064040006 CPT0064040006.WholeGenome.RP-1303.bam 72064936285 BAM submitted_aligned CPTAC3 8eb04ec8-24a6-4dd0-9d00-b7ea9cb4c8c4 4fffb423e03a494830ccbad7608b2fb2 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.WGS.T.hg38 C3L-00603 LSCC WGS tumor CPT0064040006 07d0fbf7-5440-4262-965f-c1cc1a739ea4_gdc_realn.bam 114311172616 BAM harmonized CPTAC3 de305e9b-c689-46e7-8199-5a2201a711eb 67fde82187bc5144f9d7e08cf60b5326 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.WXS.A C3L-00603 LSCC WXS tissue_normal CPT0064050006 CPT0064050006.WholeExome.RP-1303.bam 32452930144 BAM submitted_aligned CPTAC3 416c420c-9dee-43c8-ad68-b065d1d72159 3ccddfe2771de5e6c4c2213e4fe54a28 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.WXS.A.hg38 C3L-00603 LSCC WXS tissue_normal CPT0064050006 123bd489-c6dc-474d-8516-cb98dec889bb_wxs_gdc_realn.bam 43564524459 BAM harmonized CPTAC3 4534d251-625c-42b2-bb08-616e868c8560 2a529cfda6897fb9d9e8a1b6089b3f85 {"aliquot_tag": "ALQ_b64581c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00603.WXS.N C3L-00603 LSCC WXS blood_normal CPT0065370002 CPT0065370002.WholeExome.RP-1303.bam 30701628980 BAM submitted_aligned CPTAC3 fddefc94-8efc-4b60-b2c3-a92b4ad5f20e 088a6f3a095fab48a4869e24b5cf145d {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00603.WXS.N.hg38 C3L-00603 LSCC WXS blood_normal CPT0065370002 f36cc437-ce45-4922-84b4-ce0b89a29787_gdc_realn.bam 40949474640 BAM harmonized CPTAC3 760d6f80-158b-4877-b7a9-4a9339da9b3f ca58dbed2fdcd4beefc56f748b059df6 {"aliquot_tag": "ALQ_562ab67f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00603.WXS.T C3L-00603 LSCC WXS tumor CPT0064040006 CPT0064040006.WholeExome.RP-1303.bam 27521261893 BAM submitted_aligned CPTAC3 6e2f9050-143d-4bc1-8814-88d5e39574ec 45e7a2add9ad2f5325ba07277a037d81 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00603.WXS.T.hg38 C3L-00603 LSCC WXS tumor CPT0064040006 07d0fbf7-5440-4262-965f-c1cc1a739ea4_gdc_realn.bam 37894491789 BAM harmonized CPTAC3 4f9fb2d6-54be-4eae-a522-6af470371606 3721460439deb1e0dab19f4a2a858e40 {"aliquot_tag": "ALQ_360471ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.MethArray.Green.A C3L-00604 LUAD Methylation_Array tissue_normal CPT0063840009 203028200048_R04C01_Grn.idat 13676238 IDAT Green NA CPTAC3 b7331e7b-ceeb-4867-b496-2a3c23893e5c e15c41969988fd2994e7ca4e867368c4 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.MethArray.Green.T C3L-00604 LUAD Methylation_Array tumor CPT0063810006 202184900111_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 80129805-9437-4f78-9140-824157dc791c 77f7fee856130e9cb7ed0665a477831b {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.MethArray.Red.A C3L-00604 LUAD Methylation_Array tissue_normal CPT0063840009 203028200048_R04C01_Red.idat 13676238 IDAT Red NA CPTAC3 72a2a5ca-fd73-4c87-bb02-e15fb974ac1a 0b45b139d034edbe7cc6d88eecbab27b {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.MethArray.Red.T C3L-00604 LUAD Methylation_Array tumor CPT0063810006 202184900111_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 934e88e6-ea6e-4fd0-b37b-109e5112ff3a 11b423104c5a498a9efc2cf1a4979110 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.miRNA-Seq.A.hg38 C3L-00604 LUAD miRNA-Seq tissue_normal CPT0063840006 bf663351-5534-48c9-ad5b-134accfff4d8_mirnaseq_gdc_realn.bam 208835270 BAM harmonized CPTAC3 836d5c42-7231-4aa6-bb0b-c51c3554092e 25f607cfa25b098bf9e34e24af93d73e {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.miRNA-Seq.S36_L002_R1.A C3L-00604 LUAD miRNA-Seq tissue_normal CPT0063840006 181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L002_R1_001.unaln.bam 181311716 BAM S36_L002_R1 submitted_unaligned CPTAC3 61ef0676-b2ca-4b98-9d83-845a15feeea6 339484b1a16a3e6b977f7606b7ac683d {"aliquot_tag": "ALQ_1ff0cd4f", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.miRNA-Seq.S8_L003_R1.T C3L-00604 LUAD miRNA-Seq tumor CPT0063810009 180924_UNC31-K00269_0154_AHWTMLBBXX_GAGTGG_S8_L003_R1_001.unaln.bam 286330505 BAM S8_L003_R1 submitted_unaligned CPTAC3 5efc63ba-37ea-49ec-b4a8-223ec3db888d 76f3bac271f66fba1f25f656f9bd7680 {"aliquot_tag": "ALQ_47af5fae", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.miRNA-Seq.T.hg38 C3L-00604 LUAD miRNA-Seq tumor CPT0063810009 b9761e98-e2a9-4256-8820-4d33050d97f9_mirnaseq_gdc_realn.bam 311491986 BAM harmonized CPTAC3 0095f685-ff26-47ee-a0b8-aef15ec4218e a2f6fea4a2627b8562c1e143671c9f2c {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.RNA-Seq.chimeric.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.chimeric.gdc_realn.bam 40562664 BAM chimeric harmonized CPTAC3 2c23a036-def4-4fba-a8ce-d19f0fa32e29 a11687fed784d46c2d611871be555fc4 {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.RNA-Seq.chimeric.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.chimeric.gdc_realn.bam 23259039 BAM chimeric harmonized CPTAC3 f173ba80-7513-462f-bdf5-f84e7726498a db3583b47e4a412218dc54c7837fdcc2 {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.RNA-Seq.genomic.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.genomic.gdc_realn.bam 6488680978 BAM genomic harmonized CPTAC3 5f750b49-c0de-45f4-9665-a3ce85f4bacf 8425f6870000976e09a81f34ceb8bfdb {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.RNA-Seq.genomic.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.genomic.gdc_realn.bam 7975043210 BAM genomic harmonized CPTAC3 0c2efc1e-e0e4-43b7-b6b5-98137148e2e1 235de44aefe3e1e3c9de72657550fabc {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.RNA-Seq.S22_L006_R1.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R1_001.fastq.gz 3279709309 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 a0a9cadd-f144-4e0c-853a-8b0abbc263cb f3356a80ba0af9d3ce20762e9a478390 {"aliquot_tag": "ALQ_1ff0cd4f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.RNA-Seq.S22_L006_R2.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R2_001.fastq.gz 3473897504 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 3c2dfe71-2560-439a-b977-5455f44a0947 10aa0489cd2fa537600459d15bf8a7de {"aliquot_tag": "ALQ_1ff0cd4f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.RNA-Seq.S3_L007_R1.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 3718960922 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 cddf0288-f8e6-4567-861e-c89f00177e9e e1d1369096e133aa3e50999dd099aa7b {"aliquot_tag": "ALQ_47af5fae", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.RNA-Seq.S3_L007_R2.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 3883610547 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 334c4106-ba70-4db1-94eb-4d7138a069bc e74ce0d733148feb4066d680c7ae4f07 {"aliquot_tag": "ALQ_47af5fae", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.RNA-Seq.transcriptome.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.transcriptome.gdc_realn.bam 7630674522 BAM transcriptome harmonized CPTAC3 76ef5b1f-33d3-4e68-8e96-635d51ea9c7e e24b0595fc85a8f970f78e48b2ac86ec {"aliquot_tag": "ALQ_1ff0cd4f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.RNA-Seq.transcriptome.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.transcriptome.gdc_realn.bam 10748389675 BAM transcriptome harmonized CPTAC3 f7ab1789-3212-4abd-9c34-02288b31cc4c fb7b52aef9fdfabd9e283d8ee05d22ed {"aliquot_tag": "ALQ_47af5fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.WGS.A C3L-00604 LUAD WGS tissue_normal CPT0063840009 CPT0063840009.WholeGenome.RP-1303.bam 57695442688 BAM submitted_aligned CPTAC3 b54c2d6c-cdbe-44d8-a1b2-0b22ba5a20fa 09a03d8410301c6cb7fe9b3220102a73 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.WGS.A.hg38 C3L-00604 LUAD WGS tissue_normal CPT0063840009 d7158a62-4b6b-4102-8459-56e0755e2751_wgs_gdc_realn.bam 85223667769 BAM harmonized CPTAC3 bf5851fc-243e-4d15-995d-be6fd603bea6 aa5d649402a7f3df4b5c3b799f143be3 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.WGS.N C3L-00604 LUAD WGS blood_normal CPT0065330002 CPT0065330002.WholeGenome.RP-1303.bam 63051276802 BAM submitted_aligned CPTAC3 9b9355e3-0415-44bc-a7b2-f3c6f9dd4d5f 2a07d170e2cceffc1a341b0d7b67f980 {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00604.WGS.N.hg38 C3L-00604 LUAD WGS blood_normal CPT0065330002 c8513c30-14af-4dac-89e8-03450586d9f6_gdc_realn.bam 94701123417 BAM harmonized CPTAC3 5f20f01b-b4e8-4e8a-9dba-8351c388f10c 69005120c5e3022710b1be163fa076ac {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00604.WGS.T C3L-00604 LUAD WGS tumor CPT0063810006 CPT0063810006.WholeGenome.RP-1303.bam 86859007316 BAM submitted_aligned CPTAC3 3552f7df-c6d5-4639-bf7a-5313b6669dbd 5c802b077e5d89e94003df1ec60bd48e {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.WGS.T.hg38 C3L-00604 LUAD WGS tumor CPT0063810006 1464b756-be16-4e28-a7c9-29d5bc6172e9_gdc_realn.bam 134796692358 BAM harmonized CPTAC3 a80207e6-c13e-478a-b5d0-62389c04ddb5 bb07af7aa1e65410cf8af7e1b3ca1da8 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.WXS.A C3L-00604 LUAD WXS tissue_normal CPT0063840009 CPT0063840009.WholeExome.RP-1303.bam 43452532752 BAM submitted_aligned CPTAC3 a009a68f-dab9-483c-8836-dd0aaac6b983 0f839a33bee1422ac200656c47fbe161 {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.WXS.A.hg38 C3L-00604 LUAD WXS tissue_normal CPT0063840009 d7158a62-4b6b-4102-8459-56e0755e2751_wxs_gdc_realn.bam 59404569432 BAM harmonized CPTAC3 39ce1d72-d7ba-4a33-8083-91f449344ff9 e01f681e3a905710bb6d974be29abe6f {"aliquot_tag": "ALQ_8f4fd0de", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00604.WXS.N C3L-00604 LUAD WXS blood_normal CPT0065330002 CPT0065330002.WholeExome.RP-1303.bam 25211390455 BAM submitted_aligned CPTAC3 87c92b86-e153-41f1-9d10-939568af2c6d e6939045db0c7ff4f32297bd34996654 {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00604.WXS.N.hg38 C3L-00604 LUAD WXS blood_normal CPT0065330002 c8513c30-14af-4dac-89e8-03450586d9f6_gdc_realn.bam 33615478070 BAM harmonized CPTAC3 6a6f0f73-df31-44b1-89c6-d871e4c7a050 f29a43175ff0f017cc65b9238b9865ef {"aliquot_tag": "ALQ_a3aa10bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00604.WXS.T C3L-00604 LUAD WXS tumor CPT0063810006 CPT0063810006.WholeExome.RP-1303.bam 32885805162 BAM submitted_aligned CPTAC3 5c3d6f28-560b-4a61-a5a6-572094032df8 ecff2c5d5b3bad9439038e9b11a58466 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00604.WXS.T.hg38 C3L-00604 LUAD WXS tumor CPT0063810006 1464b756-be16-4e28-a7c9-29d5bc6172e9_gdc_realn.bam 45869615210 BAM harmonized CPTAC3 8c6f6680-780f-4d40-9056-1a28f2d26d2a 09b6035ecae699b189aa19a08036c994 {"aliquot_tag": "ALQ_d710423f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.MethArray.Green.T C3L-00605 UCEC Methylation_Array tumor CPT0063890006 202176290047_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1bbe8e82-f96a-4892-aacc-19abebf6af55 ddd85365d158e2fbbdfa772d2f111614 {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.MethArray.Red.T C3L-00605 UCEC Methylation_Array tumor CPT0063890006 202176290047_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 ac50c261-0d45-4b0a-ac84-7d525463bb81 7a866d90b4519c649a77c178bf7338dc {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.miRNA-Seq.S7_L003_R1.T C3L-00605 UCEC miRNA-Seq tumor CPT0063890009 180924_UNC31-K00269_0154_AHWTMLBBXX_GGTAGC_S7_L003_R1_001.unaln.bam 193487607 BAM S7_L003_R1 submitted_unaligned CPTAC3 323821c6-8c52-4939-ab11-0157414cfcb4 581d81dae32c46c8ab2d32ba438d2b83 {"aliquot_tag": "ALQ_77df146f", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.miRNA-Seq.T.hg38 C3L-00605 UCEC miRNA-Seq tumor CPT0063890009 e9da758a-8f43-411d-8d6d-b0b58207f539_mirnaseq_gdc_realn.bam 214888088 BAM harmonized CPTAC3 6d273d51-1d22-4f71-8a64-39b1b6c4fd57 cd62d794fdd04f9dd79205b51468dbac {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.chimeric.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.chimeric.gdc_realn.bam 28767632 BAM chimeric harmonized CPTAC3 552566d9-44ec-4bcb-98f6-b8a6a1da22fd 25b9fdb5c3bc5fe53fe682dc264cb463 {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.chimeric.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.chimeric.gdc_realn.bam 139549793 BAM chimeric harmonized CPTAC3 707108e4-5f9a-456d-b3db-df64e863c6c4 466320a184cb0a4bbfe8e8952cde8f1f {"aliquot_tag": "ALQ_e8baf41f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.genomic.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.genomic.gdc_realn.bam 8893378244 BAM genomic harmonized CPTAC3 43bda321-b87d-4c61-8410-16f3632842c4 f381bdca52c057377fd34794f0771500 {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.genomic.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.genomic.gdc_realn.bam 6495962704 BAM genomic harmonized CPTAC3 465589e6-4bbe-40fe-ba94-7a04d63354e3 bc2a0a6d5d4b0b0d64d8d31b86e67d69 {"aliquot_tag": "ALQ_e8baf41f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.S22_L006_R1.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4308786861 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 2ef7f6a7-6298-4cd2-a38b-9b810905ab57 5179bb1dd99d937435b46a2854c0b82a {"aliquot_tag": "ALQ_77df146f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.S22_L006_R2.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4625219569 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 7056adfe-ff91-4228-91b4-9954ba0148dd 09e4b09c6e0a73586b432bde5addca07 {"aliquot_tag": "ALQ_77df146f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.S83_R1.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R1_001.fastq.gz 3385320872 FASTQ S83_R1 submitted_unaligned CPTAC3 f1ae59e2-f920-46aa-a78a-c3a726995937 6d9e3c24dec1128565def27208f53802 {"aliquot_tag": "ALQ_e8baf41f", "sample": "S83", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.S83_R2.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R2_001.fastq.gz 3495649700 FASTQ S83_R2 submitted_unaligned CPTAC3 de78178b-7053-420d-a2a5-b20065363be4 4e7ef53f82d27b4f474dce5143bd7c67 {"aliquot_tag": "ALQ_e8baf41f", "sample": "S83", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.transcriptome.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.transcriptome.gdc_realn.bam 11369339348 BAM transcriptome harmonized CPTAC3 fff6a6ec-a254-4703-8405-49b725b4cd9f b060095e9a102e14bcee582002df0bfc {"aliquot_tag": "ALQ_77df146f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.RNA-Seq.transcriptome.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.transcriptome.gdc_realn.bam 2820957856 BAM transcriptome harmonized CPTAC3 5362883c-7255-4f85-8a87-e98071ee09c8 e1b8a3a4055b4946184d75007d9d2a97 {"aliquot_tag": "ALQ_e8baf41f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.WGS.N C3L-00605 UCEC WGS blood_normal CPT0065340002 CPT0065340002.WholeGenome.RP-1303.bam 103126627116 BAM submitted_aligned CPTAC3 e60ba070-a4f5-4479-9eda-e259a62aa017 020fa3852fa060d397eaa67d1713c6ed {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00605.WGS.N.hg38 C3L-00605 UCEC WGS blood_normal CPT0065340002 9c7363c2-750a-408e-aa11-1bfaae41e7d0_gdc_realn.bam 160012713673 BAM harmonized CPTAC3 8f0c137b-dc5d-43c6-81e8-d728d8a1c5a8 a81cf67291109449a59197c14f7c79e0 {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00605.WGS.T C3L-00605 UCEC WGS tumor CPT0063890006 CPT0063890006.WholeGenome.RP-1303.bam 98055462108 BAM submitted_aligned CPTAC3 9c1798df-913b-40e8-aebd-f7864f01e283 4e75d2eefc503aa204a9f56682c1629e {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.WGS.T.hg38 C3L-00605 UCEC WGS tumor CPT0063890006 d9a888d9-211a-4a13-bbed-23dba208a9d2_gdc_realn.bam 152827782905 BAM harmonized CPTAC3 e8fc5d11-248f-4095-b9bd-e4f2c732e6fb 482536dc3574f0d8c3a97462d34c73a6 {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.WXS.N C3L-00605 UCEC WXS blood_normal CPT0065340002 CPT0065340002.WholeExome.RP-1303.bam 33043516916 BAM submitted_aligned CPTAC3 4988c33a-7ed3-499b-afa3-6f8c35e176a6 a43b5e81ba8b86f3877c0a6ddddd70b1 {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00605.WXS.N.hg38 C3L-00605 UCEC WXS blood_normal CPT0065340002 9c7363c2-750a-408e-aa11-1bfaae41e7d0_gdc_realn.bam 44867241203 BAM harmonized CPTAC3 54a0c2d4-cbb6-41f9-bfaa-e8c58c7f5362 54f9157d530564c4e68cb53594ddaab0 {"aliquot_tag": "ALQ_118accaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00605.WXS.T C3L-00605 UCEC WXS tumor CPT0063890006 CPT0063890006.WholeExome.RP-1303.bam 30992348867 BAM submitted_aligned CPTAC3 ac1f750a-fa75-4c5a-96f7-4c56d795082f a5857d72f19e72d564ffb821ac21c47f {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00605.WXS.T.hg38 C3L-00605 UCEC WXS tumor CPT0063890006 d9a888d9-211a-4a13-bbed-23dba208a9d2_gdc_realn.bam 42595336721 BAM harmonized CPTAC3 d3e79d6a-2baf-4059-9ecb-ec1073619f26 803898b2b0a345749b951be56191791e {"aliquot_tag": "ALQ_e76009fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_13415cf8.miRNA-Seq.S35_L003_R1.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079280006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L003_R1_001.unaln.bam 244651016 BAM S35_L003_R1 submitted_unaligned CPTAC3 ed840d13-64bd-4ed5-8416-ec7c2579bbc5 641987ac305b47bc20d878b067392faf {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_13415cf8.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079280006 a770c4ec-a4fe-4278-9784-c9269ddab9b7_mirnaseq_gdc_realn.bam 272216507 BAM harmonized CPTAC3 3c8bb34a-9486-4808-a4e0-75193ace261c 283841a6092b5624a4b3baff76578469 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_13415cf8.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.chimeric.gdc_realn.bam 137124607 BAM chimeric harmonized CPTAC3 9a8ce6f4-87ff-4803-a1f1-ae454e88c79b 8ab6e16439111d3c888b27192795ef83 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_13415cf8.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.genomic.gdc_realn.bam 7649688030 BAM genomic harmonized CPTAC3 01c7609e-633d-4571-aa01-b42a00d0a353 8d343860277c085d363c0935d1347a65 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_13415cf8.RNA-Seq.S2_L001_R1.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R1_001.fastq.gz 3161018660 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 09b97952-9927-4705-95f5-70dfc575427e b6756fa2265714870d117101977cc225 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_13415cf8.RNA-Seq.S2_L001_R2.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R2_001.fastq.gz 3815255893 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 a024c126-7dca-4417-9a95-60649b9384b2 8eae2d6d3447fe57d3ff36b990cde612 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_13415cf8.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.transcriptome.gdc_realn.bam 9545346936 BAM transcriptome harmonized CPTAC3 66d7a9f5-3565-4f42-aa56-66a6336b6707 31356088d6af74a92e190b49193bd340 {"aliquot_tag": "DUP_13415cf8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_2e217548.miRNA-Seq.S36_L003_R1.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079290006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L003_R1_001.unaln.bam 258462014 BAM S36_L003_R1 submitted_unaligned CPTAC3 14369cde-31ea-471c-b2cf-cac30a449f59 2b209e704d465ba453fe54a51123ae3f {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_2e217548.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079290006 e373db0f-f8a1-47a2-8a0e-ad812fac0621_mirnaseq_gdc_realn.bam 288617248 BAM harmonized CPTAC3 f7affb97-b962-4a5b-9617-200af34c07ff 33ae974b4288627d74db3d006e938a6e {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_2e217548.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.chimeric.gdc_realn.bam 93673355 BAM chimeric harmonized CPTAC3 c2770117-e211-4f05-8b38-5e6a796ce1f0 694aee2e5f5ce62a9da10424f9468bd4 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_2e217548.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.genomic.gdc_realn.bam 10760326638 BAM genomic harmonized CPTAC3 d501a752-470f-40ea-8063-97846aa49f14 03be0fc0115670d09f472d2ae62d4f29 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_2e217548.RNA-Seq.S3_L001_R1.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4766794011 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 35a41cff-30e6-444b-8e79-5ed6bcd0c649 713a5e045db17aff3327a2380796e673 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_2e217548.RNA-Seq.S3_L001_R2.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 5664402490 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 5f052edd-5f06-49f4-b792-f02153f1f13a 429523355c4f63e0f856bac11b41ad7e {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_2e217548.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.transcriptome.gdc_realn.bam 13976095062 BAM transcriptome harmonized CPTAC3 ab37dafb-9237-4130-b7a9-2a39a57f9ed1 1d360e4b4505e3a67b20a1b4606106c2 {"aliquot_tag": "DUP_2e217548", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_83fe4169.MethArray.Green.T C3L-00606 CCRCC Methylation_Array tumor CPT0079280009 204372030161_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 55abf0fc-a0a8-421e-b091-7547b1e9148e 034f38e559527475976685a2fef4ecf0 {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_83fe4169.MethArray.Red.T C3L-00606 CCRCC Methylation_Array tumor CPT0079280009 204372030161_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 d13a71a2-7aab-4182-9325-209cc33aea89 e519daa975a4ca095480e04b229d46df {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_83fe4169.WGS.T C3L-00606 CCRCC WGS tumor CPT0079280009 CPT0079280009.WholeGenome.RP-2158.bam 22856853246 BAM submitted_aligned CPTAC3 dfebdd7e-fd5d-4898-b82b-c3ae7eb5fa9f acc3ac455ebdd0a32db1950c554ae7db {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_83fe4169.WGS.T.hg38 C3L-00606 CCRCC WGS tumor CPT0079280009 d9ec0e40-42e1-48d3-a525-cf03f9c4aab8_wgs_gdc_realn.bam 68658339364 BAM harmonized CPTAC3 f14067f2-5f19-4893-a139-91d0e5c10548 6b06d77e84a18c5f5f8514142a1a911a {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_83fe4169.WXS.T C3L-00606 CCRCC WXS tumor CPT0079280009 CPT0079280009.WholeExome.RP-1303.bam 18200718527 BAM submitted_aligned CPTAC3 013942d6-758d-4b72-be74-b75db3e0078d 72f0169faf53b38616dc012529b2809d {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_83fe4169.WXS.T.hg38 C3L-00606 CCRCC WXS tumor CPT0079280009 d9ec0e40-42e1-48d3-a525-cf03f9c4aab8_wxs_gdc_realn.bam 25779851202 BAM harmonized CPTAC3 1e1b67d0-8998-4ee0-b971-15562e7d369e 74bec64e6decefbf1e60ea69203962b8 {"aliquot_tag": "DUP_83fe4169", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_be9e68d9.MethArray.Green.T C3L-00606 CCRCC Methylation_Array tumor CPT0079290009 204372030072_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e4d82f96-e089-4441-902c-cd182bf86f19 65e3e88a3a49d07043960a34afe1f4c6 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_be9e68d9.MethArray.Red.T C3L-00606 CCRCC Methylation_Array tumor CPT0079290009 204372030072_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 7a425473-3d0f-48df-a02f-4d0a8aea3aa1 dbe5c40e68b317edccbad92932f4036e {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_be9e68d9.WGS.T C3L-00606 CCRCC WGS tumor CPT0079290009 CPT0079290009.WholeGenome.RP-2158.bam 27316669249 BAM submitted_aligned CPTAC3 34693593-c490-431a-b8fa-9b797c71a48c 725e176214c1c78aa3b7bfc5fc90739e {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_be9e68d9.WGS.T.hg38 C3L-00606 CCRCC WGS tumor CPT0079290009 430ef314-65b1-465f-acbc-7e4460ed7f69_wgs_gdc_realn.bam 83198351556 BAM harmonized CPTAC3 b4b2a6cb-06fc-41be-8b53-aa8dfdfee364 d17b559770a0f59bbdf871c2614f2547 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_be9e68d9.WXS.T C3L-00606 CCRCC WXS tumor CPT0079290009 CPT0079290009.WholeExome.RP-1303.bam 17343605850 BAM submitted_aligned CPTAC3 cf6ce7ca-45ef-41f2-aec1-d67c9ca16460 70798709fb700dbc1eccc14a2df3bea2 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.DUP_be9e68d9.WXS.T.hg38 C3L-00606 CCRCC WXS tumor CPT0079290009 430ef314-65b1-465f-acbc-7e4460ed7f69_wxs_gdc_realn.bam 24048610611 BAM harmonized CPTAC3 2a2be233-043a-440b-99a5-4c5db94fd595 eebe2d5096963e2140990532f7c313a1 {"aliquot_tag": "DUP_be9e68d9", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.MethArray.Green.A C3L-00606 CCRCC Methylation_Array tissue_normal CPT0079300009 204930630040_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8eeafc77-715e-443c-a72c-8210cd7c92d9 afe75d05504432f98b754c6336489ec4 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.MethArray.Green.T C3L-00606 CCRCC Methylation_Array tumor CPT0079270009 202184990008_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 944d78ee-cb1c-4522-bab7-bdeba711649d a8cd4aa5be536fbdac34e3900d4f105a {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.MethArray.Red.A C3L-00606 CCRCC Methylation_Array tissue_normal CPT0079300009 204930630040_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 4e485a24-06f6-40e6-9fda-87e7336e0b2c 55eb5261bf4b9f71f9c0914b1ecc4f1e {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.MethArray.Red.T C3L-00606 CCRCC Methylation_Array tumor CPT0079270009 202184990008_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 a8be6067-ae24-495f-845e-c6e4d460afee f43b7965d77af67a447099d47bd85e12 {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.miRNA-Seq.A.hg38 C3L-00606 CCRCC miRNA-Seq tissue_normal CPT0079300006 77eb0557-89d0-448e-a0c6-a5e06c4575fe_mirnaseq_gdc_realn.bam 274684689 BAM harmonized CPTAC3 97d37385-c3fb-4568-b1b4-4483f1763fda 28a25dc01a32fc8a51e681c8aeddf9a2 {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.miRNA-Seq.S25_L007_R1.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079270006 181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L007_R1_001.unaln.bam 186801172 BAM S25_L007_R1 submitted_unaligned CPTAC3 5578cd29-c004-4a34-80d9-262c11eb3da3 256678e105a67f968539fdfe5bafa6a8 {"aliquot_tag": "ALQ_9111cb29", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.miRNA-Seq.S46_L004_R1.A C3L-00606 CCRCC miRNA-Seq tissue_normal CPT0079300006 181108_UNC31-K00269_0163_BH23TVBBXY_TCCCGA_S46_L004_R1_001.unaln.bam 245669922 BAM S46_L004_R1 submitted_unaligned CPTAC3 e2795bea-2f23-4bc3-86fc-4d667b1ebd0e 41243fdf1b4770eeba6cbeff83e86c78 {"aliquot_tag": "ALQ_e86dc49c", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079270006 d98c99f4-a0f7-45f6-9560-1d53ebe7ad3b_mirnaseq_gdc_realn.bam 209496188 BAM harmonized CPTAC3 d3e05074-b433-46e2-86d1-db0909c30852 75ad4abdc275b8d58d8c32b6d825dc2a {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.RNA-Seq.chimeric.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.chimeric.gdc_realn.bam 80680422 BAM chimeric harmonized CPTAC3 616007a7-db93-4b39-90db-2ca841917eac 7d67b3739a1d5a0f056f566b4571b85e {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.chimeric.gdc_realn.bam 213153686 BAM chimeric harmonized CPTAC3 ac33693a-b0cb-443e-a715-dea9cba11e5b 99535a43b88750c8be149d975d931ec6 {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.RNA-Seq.genomic.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.genomic.gdc_realn.bam 8732457205 BAM genomic harmonized CPTAC3 c3d45eb9-892d-43b7-8c30-180c79c76d84 b5203beb962c504a4d72cd9a7fd07504 {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.genomic.gdc_realn.bam 8206599368 BAM genomic harmonized CPTAC3 58a55672-a230-4a86-a79f-f990131d3457 51952f991dc1e6297b51e2abb14f1d62 {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.RNA-Seq.S14_L004_R1.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4073068847 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 c609497c-f015-409f-9cf7-3b466a1dd9e4 eddc2c5c057c54b5b21cc51105b88b7c {"aliquot_tag": "ALQ_9111cb29", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.RNA-Seq.S14_L004_R2.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4450605623 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 0f88b422-2196-4cc5-a77b-f48806ec407f 1923295b2cc2351e568326d497406712 {"aliquot_tag": "ALQ_9111cb29", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.RNA-Seq.S7_L008_R1.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R1_001.fastq.gz 4236947704 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 17763b60-3901-4f7f-8074-d075ec244076 702ea37e9267d8eb6e1ff246694978f8 {"aliquot_tag": "ALQ_e86dc49c", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.RNA-Seq.S7_L008_R2.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R2_001.fastq.gz 4683728721 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 e298efe4-16f4-46ec-af52-d098a306ee1d 45dff2f22f0c58a6acd3c30d959b4ba9 {"aliquot_tag": "ALQ_e86dc49c", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.RNA-Seq.transcriptome.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.transcriptome.gdc_realn.bam 10708518017 BAM transcriptome harmonized CPTAC3 e20fe32a-3eba-41cd-a315-6f970d4347e2 19e4a435291acc76b03aeb7954dc7441 {"aliquot_tag": "ALQ_e86dc49c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.transcriptome.gdc_realn.bam 12563184875 BAM transcriptome harmonized CPTAC3 ef24f8c1-661a-4dee-af08-b8eeb4f41fd2 1d6fb2a726b17a5f6678b4b360e446a7 {"aliquot_tag": "ALQ_9111cb29", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.S1_L001_R1.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R1_001.fastq.gz 5909535316 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 35f5df89-97ce-42bb-b877-b5895897264c e0e04b5a75fa7ac55f4cbe5958707e76 {"aliquot_tag": "ALQ_f8600ee7", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.S1_L001_R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R2_001.fastq.gz 20536180766 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 de34e27a-d64a-41a1-a883-d9ef33055b9f e668e6fa36aa61fd8dc615a657a642d0 {"aliquot_tag": "ALQ_f8600ee7", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.S1_L003_R1.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R1_001.fastq.gz 7006974487 FASTQ S1_L003_R1 submitted_unaligned CPTAC3 8e887aa1-f154-4df2-857c-3bdca0b7c9c6 6570d8dc19731d2c838493b57941e119 {"aliquot_tag": "ALQ_4750b086", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.S1_L003_R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R2_001.fastq.gz 25485703292 FASTQ S1_L003_R2 submitted_unaligned CPTAC3 423b2131-85be-4a3e-a8e3-7fd0a153c2db 9cc7e14fd80755b6c860e0e831b0a64f {"aliquot_tag": "ALQ_4750b086", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.S1_L004_R1.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R1_001.fastq.gz 9757383027 FASTQ S1_L004_R1 submitted_unaligned CPTAC3 28c6d96c-f9f7-4ceb-939d-fcd71cb40b97 994d4fef04770427c28ee90c5bd09903 {"aliquot_tag": "ALQ_7a309936", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.S1_L004_R2.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R2_001.fastq.gz 21071134741 FASTQ S1_L004_R2 submitted_unaligned CPTAC3 0601ec15-081d-418f-a6dd-510ed23c5337 0abc388faaf4746c1f3f363bf2a6cf67 {"aliquot_tag": "ALQ_7a309936", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.T.hg38 C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 possorted_genome_bam.bam 19025066241 BAM harmonized CPTAC3 96a35eb6-61b1-431f-838e-a09618450c75 26d2dc5446646d25caaf8e4b2c0c599d {"aliquot_tag": "ALQ_f8600ee7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.T.hg38 C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 possorted_genome_bam.bam 20245972318 BAM harmonized CPTAC3 af308212-f526-4940-850f-26a298579b11 830548722971018774d90b403188631e {"aliquot_tag": "ALQ_7a309936", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.scRNA-Seq.T.hg38 C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 possorted_genome_bam.bam 23849569805 BAM harmonized CPTAC3 0b956b04-5d23-49f8-9586-2ed71cbcc3fc 5699a009287f63d5f84ad90d1d5e5df3 {"aliquot_tag": "ALQ_4750b086", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.WGS.A C3L-00606 CCRCC WGS tissue_normal CPT0079300009 CPT0079300009.WholeGenome.RP-1303.bam 64686378157 BAM submitted_aligned CPTAC3 33590b57-3b79-4b8c-8774-5d2b1f0f0aec 7e7ced207601d653d781a16875370022 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.WGS.A.hg38 C3L-00606 CCRCC WGS tissue_normal CPT0079300009 e037f72e-e7a4-424c-b007-234c10e41d24_wgs_gdc_realn.bam 95254866972 BAM harmonized CPTAC3 352f0caa-a6cf-49be-8476-de93adaa9b94 5a864ef7d922fdfceff3da1f1d776d52 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.WGS.N C3L-00606 CCRCC WGS blood_normal CPT0080110002 CPT0080110002.WholeGenome.RP-1303.bam 62412835946 BAM submitted_aligned CPTAC3 66aa336c-f58c-4f03-a35f-93ade7810bda 820acfa47dc66cba54ea9db6a2fbc832 {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00606.WGS.N.hg38 C3L-00606 CCRCC WGS blood_normal CPT0080110002 b8fe112b-ae62-4c1f-8856-7599e851035c_gdc_realn.bam 92655478936 BAM harmonized CPTAC3 e8447ffd-deea-4bd1-be61-b76a467be683 7694314fa3d44a8fac1ce813b403d64b {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00606.WGS.T C3L-00606 CCRCC WGS tumor CPT0079270009 CPT0079270009.WholeGenome.RP-1303.bam 55148915318 BAM submitted_aligned CPTAC3 63bd5959-4380-4778-bafb-eacb1d33ba8d 26620a2577b3951165a48e7676cc77f1 {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.WGS.T.hg38 C3L-00606 CCRCC WGS tumor CPT0079270009 c873d23c-79cd-44f8-bfe1-1991e24a6f7d_gdc_realn.bam 81909662524 BAM harmonized CPTAC3 14bff2fb-447b-4af1-92b3-a23295dc64e0 85c0a9fc3c9604143d5d6832bbe8dcff {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.WXS.A C3L-00606 CCRCC WXS tissue_normal CPT0079300009 CPT0079300009.WholeExome.RP-1303.bam 40323998717 BAM submitted_aligned CPTAC3 adaabf36-6a44-4f41-a77f-cc65af098d64 8d4aee670c94e4273fd825db1f8f3998 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.WXS.A.hg38 C3L-00606 CCRCC WXS tissue_normal CPT0079300009 e037f72e-e7a4-424c-b007-234c10e41d24_wxs_gdc_realn.bam 54790485900 BAM harmonized CPTAC3 60040b86-fbf5-417b-94c0-c28fa846ad71 116eeaa4f852a16c4af336014a1cf419 {"aliquot_tag": "ALQ_78d2d90d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00606.WXS.N C3L-00606 CCRCC WXS blood_normal CPT0080110002 CPT0080110002.WholeExome.RP-1303.bam 22403374998 BAM submitted_aligned CPTAC3 f55b6f7a-e090-4784-a875-8f07dc6877ed db29df9155eb841ceb46d4f8278709ca {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00606.WXS.N.hg38 C3L-00606 CCRCC WXS blood_normal CPT0080110002 b8fe112b-ae62-4c1f-8856-7599e851035c_gdc_realn.bam 30061559684 BAM harmonized CPTAC3 e6c6780a-4cc7-432e-8431-5b59a15d11c6 d31757394104b36d985330030dffe089 {"aliquot_tag": "ALQ_d310df41", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00606.WXS.T C3L-00606 CCRCC WXS tumor CPT0079270009 CPT0079270009.WholeExome.RP-1303.bam 31587024929 BAM submitted_aligned CPTAC3 96a41058-8e54-4314-b1d1-72f3345bbf85 66a8167c24b878cb650309f4075445ab {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00606.WXS.T.hg38 C3L-00606 CCRCC WXS tumor CPT0079270009 c873d23c-79cd-44f8-bfe1-1991e24a6f7d_gdc_realn.bam 43524921618 BAM harmonized CPTAC3 08e74cee-0100-4130-8225-fd2b77b0e592 7f66a1f37f818061e7ebe553c6051e79 {"aliquot_tag": "ALQ_1aed6b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.MethArray.Green.A C3L-00607 CCRCC Methylation_Array tissue_normal CPT0025060009 204930640042_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 5711927d-256b-45c1-9389-e18dd0e0fb3b bde13bf9dcc157f21ff45667b3b19fd2 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.MethArray.Green.T C3L-00607 CCRCC Methylation_Array tumor CPT0025050009 202184990066_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cd8d2e9c-72fe-4001-99cb-1a1fdc57be21 f0143197839bdb1f161b47b67c93afc2 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.MethArray.Red.A C3L-00607 CCRCC Methylation_Array tissue_normal CPT0025060009 204930640042_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 10a6edee-e18b-4438-819e-8a91175bf28b 96f77735e75ad10dd6b83b04e37ba8bd {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.MethArray.Red.T C3L-00607 CCRCC Methylation_Array tumor CPT0025050009 202184990066_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 aa4503cd-1152-4820-b650-ab6191a56189 6d03c191db5ac79ff340dc5c754ccaa8 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.miRNA-Seq.A.hg38 C3L-00607 CCRCC miRNA-Seq tissue_normal CPT0025060006 ec49624e-ecaa-4cd6-9102-569c040e83c4_mirnaseq_gdc_realn.bam 179102975 BAM harmonized CPTAC3 99c05698-9681-4188-960e-66c304a46d0e 12ed361ad3f639a2f507d32acc2e554d {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.miRNA-Seq.S2_L001_R1.T C3L-00607 CCRCC miRNA-Seq tumor CPT0025050006 180924_UNC31-K00269_0154_AHWTMLBBXX_TTAGGC_S2_L001_R1_001.unaln.bam 159975026 BAM S2_L001_R1 submitted_unaligned CPTAC3 e7a932aa-0940-4b1c-8764-1495f30c3e66 8f4646d281d67b3e812070f7d8ce5a39 {"aliquot_tag": "ALQ_29595d52", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.miRNA-Seq.S8_L003_R1.A C3L-00607 CCRCC miRNA-Seq tissue_normal CPT0025060006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L003_R1_001.unaln.bam 160618685 BAM S8_L003_R1 submitted_unaligned CPTAC3 1c18822f-b0a1-42c8-af71-a4050a19545b e9e162095a8f32ba5c088f27fe993465 {"aliquot_tag": "ALQ_6ef92782", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.miRNA-Seq.T.hg38 C3L-00607 CCRCC miRNA-Seq tumor CPT0025050006 a00a647a-d53e-463a-8ea2-a2e2bb529866_mirnaseq_gdc_realn.bam 173595676 BAM harmonized CPTAC3 757ebf79-90fe-412c-8400-d0a00eb953e4 ff3c945a07a3e333de339bcfb0282d0e {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.RNA-Seq.chimeric.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.chimeric.gdc_realn.bam 32728424 BAM chimeric harmonized CPTAC3 d2541e8d-73c0-4f1b-b1ee-ba3ce58a6ca7 62a54aa9655bbd6013f153b1725d597b {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.RNA-Seq.chimeric.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.chimeric.gdc_realn.bam 64712169 BAM chimeric harmonized CPTAC3 b6043c1c-01ec-49e0-9ff5-efabd488dc39 c7eb6d34cca227f0ecc9be1fa362222e {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.RNA-Seq.genomic.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.genomic.gdc_realn.bam 7429344445 BAM genomic harmonized CPTAC3 d80a6bb0-dece-4eed-ba33-183cb0715938 009acd5ca8bca2844aa7c1cc22c47522 {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.RNA-Seq.genomic.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.genomic.gdc_realn.bam 7228486066 BAM genomic harmonized CPTAC3 186f46c2-77a3-4327-a4f3-27f42df0ca33 a4fbd701bc51fe1f565e2a0cd8a8d925 {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.RNA-Seq.S18_L005_R1.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R1_001.fastq.gz 3654075527 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 9d6e4b39-0d25-48da-bffe-f3df9ba5c2ee 8c620947f2147e50cd4eca7a44fe294e {"aliquot_tag": "ALQ_6ef92782", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.RNA-Seq.S18_L005_R2.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R2_001.fastq.gz 4031773432 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 4779af1c-584c-481b-90a0-b28c94879c8d 43cb877296159079221dec6d1917dca2 {"aliquot_tag": "ALQ_6ef92782", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.RNA-Seq.S2_L001_R1.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R1_001.fastq.gz 3565751071 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 1029d950-d46f-4ee3-adc7-fcedfaaa9934 5e87225e4eed403e981a7353bb7817d2 {"aliquot_tag": "ALQ_29595d52", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.RNA-Seq.S2_L001_R2.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R2_001.fastq.gz 3902396964 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 971e3386-6c90-4819-9eda-78abf0bd8792 678d02298f5419eabdef034520a146f4 {"aliquot_tag": "ALQ_29595d52", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.RNA-Seq.transcriptome.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.transcriptome.gdc_realn.bam 9296205585 BAM transcriptome harmonized CPTAC3 42f89af5-081f-4b1f-aab6-7a27bfd8a7e4 06b0446c565b2daf1d44c11927824d12 {"aliquot_tag": "ALQ_6ef92782", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.RNA-Seq.transcriptome.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.transcriptome.gdc_realn.bam 9809788419 BAM transcriptome harmonized CPTAC3 e4fb7776-1eb4-4224-afa8-1f1b99cbfbbd 4a3bfb02baabb672de934d93cf25de28 {"aliquot_tag": "ALQ_29595d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.WGS.A C3L-00607 CCRCC WGS tissue_normal CPT0025060009 CPT0025060009.WholeGenome.RP-1303.bam 60196224520 BAM submitted_aligned CPTAC3 ecbe26b8-e7db-43d2-bed3-e26fb65e0076 74c3173267f678a5f911dac8c63b7525 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.WGS.A.hg38 C3L-00607 CCRCC WGS tissue_normal CPT0025060009 946e20ea-7481-4aac-82f9-f4543083c284_wgs_gdc_realn.bam 87648399573 BAM harmonized CPTAC3 66304449-54ff-41a8-beff-2344d7956633 d36488d9b08fb5771479de62a76326fb {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.WGS.N C3L-00607 CCRCC WGS blood_normal CPT0029400002 CPT0029400002.WholeGenome.RP-1303.bam 55927105562 BAM submitted_aligned CPTAC3 e067c687-9855-4636-be48-0ca284a3fcee 0e8fef626403708aa124e33477b9c0c7 {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00607.WGS.N.hg38 C3L-00607 CCRCC WGS blood_normal CPT0029400002 13646ce6-d98b-4bb0-a5d8-4cd94406b688_gdc_realn.bam 80783683828 BAM harmonized CPTAC3 7593f7a3-e21c-4554-96cd-f10317c70c88 c8953fd187cc6b544d2d425bb312e77e {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00607.WGS.T C3L-00607 CCRCC WGS tumor CPT0025050009 CPT0025050009.WholeGenome.RP-1303.bam 60273775409 BAM submitted_aligned CPTAC3 092f044b-63b0-472a-95db-e7769dcc6b9c e0312022fa6575051b7b60295ae817c4 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.WGS.T.hg38 C3L-00607 CCRCC WGS tumor CPT0025050009 db516445-d4aa-4224-b80d-45896c0821ae_gdc_realn.bam 87815377665 BAM harmonized CPTAC3 67d4bd2c-9943-4a63-9166-067fb93babb2 0b9155ea8627c3bb75a3ca8de29ee464 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.WXS.A C3L-00607 CCRCC WXS tissue_normal CPT0025060009 CPT0025060009.WholeExome.RP-1303.bam 38378163241 BAM submitted_aligned CPTAC3 929e1fe1-ce4e-467f-8a20-cb91c6454d15 ea641765fa311935dd60ba06b16488e2 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.WXS.A.hg38 C3L-00607 CCRCC WXS tissue_normal CPT0025060009 946e20ea-7481-4aac-82f9-f4543083c284_wxs_gdc_realn.bam 51528018532 BAM harmonized CPTAC3 909b9c34-5d4a-40c6-b656-d8ba799edfd3 7a6f46acba61382dde49eb369fb0f324 {"aliquot_tag": "ALQ_fe463a13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00607.WXS.N C3L-00607 CCRCC WXS blood_normal CPT0029400002 CPT0029400002.WholeExome.RP-1303.bam 26190654241 BAM submitted_aligned CPTAC3 b1ba27cc-0929-4ddb-ab84-386c9c343dcf 31e4b8b41f142cb76fadd42bcd1e9b08 {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00607.WXS.N.hg38 C3L-00607 CCRCC WXS blood_normal CPT0029400002 13646ce6-d98b-4bb0-a5d8-4cd94406b688_gdc_realn.bam 35547680283 BAM harmonized CPTAC3 a9d8ee54-11e2-4725-876d-64a004b8dd78 6761fd732dd21bb53eadb5ebe44a533f {"aliquot_tag": "ALQ_bae53e59", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00607.WXS.T C3L-00607 CCRCC WXS tumor CPT0025050009 CPT0025050009.WholeExome.RP-1303.bam 24602618854 BAM submitted_aligned CPTAC3 9c6e1ade-1a72-46c2-98a1-af8d61790952 11fceed4648edb93e11e740f2ab44f93 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00607.WXS.T.hg38 C3L-00607 CCRCC WXS tumor CPT0025050009 db516445-d4aa-4224-b80d-45896c0821ae_gdc_realn.bam 33650890376 BAM harmonized CPTAC3 98e189cf-1d64-47af-a377-bf3dbfb7779f d8dc891218a56bd28085d86cae6dc958 {"aliquot_tag": "ALQ_b9e640c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00608.MethArray.Green.T C3L-00608 CCRCC Methylation_Array tumor CPT0390480006 205549610123_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 aecaa4be-99d8-4b30-bc9e-b6ac6b967aca 1c5523b5f3f73026a19aadc77d9f79c9 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.MethArray.Red.T C3L-00608 CCRCC Methylation_Array tumor CPT0390480006 205549610123_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 7c20a1e5-ca93-488d-ad31-bc922a0ba436 84abe10501d8f84d9df57fc87e3935f6 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.miRNA-Seq.S35_L002_R1.T C3L-00608 CCRCC miRNA-Seq tumor CPT0390480009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCATTC_S35_L002_R1_001.unaln.bam 296089951 BAM S35_L002_R1 submitted_unaligned CPTAC3 d25b1aad-c220-44e8-b8a4-8c77b7f14b70 5b8aa93ae0455ad6fcc1b890d2be6318 {"aliquot_tag": "ALQ_ec38c950", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.miRNA-Seq.T.hg38 C3L-00608 CCRCC miRNA-Seq tumor CPT0390480009 a5bef58a-6114-4f0d-a71a-0e62b6178dc9_mirnaseq_gdc_realn.bam 313775746 BAM harmonized CPTAC3 48cebf52-ad49-4413-8d5e-b306a03db662 3af76ec5f4cdc6ddd7236740b7953f64 {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.RNA-Seq.chimeric.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.chimeric.gdc_realn.bam 368342961 BAM chimeric harmonized CPTAC3 96c68208-626b-43f9-9c24-5c32a8c52813 b8afe0a99eefbaf9e2d72aa4411aefb8 {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.RNA-Seq.genomic.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.genomic.gdc_realn.bam 8407644954 BAM genomic harmonized CPTAC3 67c9747a-81cd-402e-949a-fa6a20a1aa77 3587ee382f5b36add7a782d1b19c8d3a {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.RNA-Seq.S19_L006_R1.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R1_001.fastq.gz 3965218141 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 fdcd0f9b-f5b3-48b2-9237-c3bf94ad1dc7 afbb9fe697f6e9681e4c193b91b135d0 {"aliquot_tag": "ALQ_ec38c950", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.RNA-Seq.S19_L006_R2.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R2_001.fastq.gz 4487009468 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 8ff2ace2-2f50-4d0d-a54e-adf709e8c2b1 09cd5aea9268bcd1f91856f302e2f25f {"aliquot_tag": "ALQ_ec38c950", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.RNA-Seq.transcriptome.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.transcriptome.gdc_realn.bam 9687433773 BAM transcriptome harmonized CPTAC3 34162df4-7490-4af1-8dff-ba2f42a6b067 23b4e5b68894649e72793a9498cc0c50 {"aliquot_tag": "ALQ_ec38c950", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.WGS.N C3L-00608 CCRCC WGS blood_normal CPT0390540002 CPT0390540002.WholeGenome.RP-2158.bam 22546245686 BAM submitted_aligned CPTAC3 d2e5b96d-d209-4a5f-9dfe-87bd9e63b3b4 e7f83cb4c3f31732961461507cb92fd4 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00608.WGS.N.hg38 C3L-00608 CCRCC WGS blood_normal CPT0390540002 8b563fdb-c01d-42e1-85c6-1e182545288b_wgs_gdc_realn.bam 70509286066 BAM harmonized CPTAC3 2b26c5d3-d8f9-47bf-8110-b7d21e25b580 7489e9fca5b258c44c69802e2b05b177 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00608.WGS.T C3L-00608 CCRCC WGS tumor CPT0390480006 CPT0390480006.WholeGenome.RP-2158.bam 21625592296 BAM submitted_aligned CPTAC3 46dbc208-0865-4f44-ad9c-5b89f0d0bbf5 a429100567b01415205e9749d2e39f73 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.WGS.T.hg38 C3L-00608 CCRCC WGS tumor CPT0390480006 e984c099-8c3b-4306-9fe6-14d31ad40b0c_wgs_gdc_realn.bam 65410149334 BAM harmonized CPTAC3 80597859-3d5a-4c58-82d5-0073c1fec878 946b04db5a926af8ba836bc3fc3993c5 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.WXS.N C3L-00608 CCRCC WXS blood_normal CPT0390540002 CPT0390540002.WholeExome.RP-1303.bam 16934604316 BAM submitted_aligned CPTAC3 d8e0dffa-269b-4f47-8136-a518a4194db7 c85297ee618821f4fcb3f34f03634b63 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00608.WXS.N.hg38 C3L-00608 CCRCC WXS blood_normal CPT0390540002 8b563fdb-c01d-42e1-85c6-1e182545288b_wxs_gdc_realn.bam 23283787675 BAM harmonized CPTAC3 5921110d-309e-4bfa-81de-fbb2351e5973 bf20eaa36d4e3ec0b14d41c7f204c902 {"aliquot_tag": "ALQ_75462e7c", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-00608.WXS.T C3L-00608 CCRCC WXS tumor CPT0390480006 CPT0390480006.WholeExome.RP-1303.bam 24329294109 BAM submitted_aligned CPTAC3 25f8d8af-08f8-4f3e-83e6-f1ab82949676 128ea77ba5016515138fa9a55c972d5c {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00608.WXS.T.hg38 C3L-00608 CCRCC WXS tumor CPT0390480006 e984c099-8c3b-4306-9fe6-14d31ad40b0c_wxs_gdc_realn.bam 34214979863 BAM harmonized CPTAC3 43df9351-95d7-4e54-a648-1617c8bd78a0 f72d75361537d6f1212a93bc575fb271 {"aliquot_tag": "ALQ_7c87d4c1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-00610.MethArray.Green.T C3L-00610 CCRCC Methylation_Array tumor CPT0025110009 202184900148_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 54af3b45-1b64-499a-bf89-6b1941391856 951134a1d97c75bc1b24588fd272d414 {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.MethArray.Red.T C3L-00610 CCRCC Methylation_Array tumor CPT0025110009 202184900148_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 81ed544e-524f-4d24-adff-3c9c520d676d d5e93674ef4c14488b5f0cead7adf99e {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.miRNA-Seq.S20_L001_R1.T C3L-00610 CCRCC miRNA-Seq tumor CPT0025110006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAGATC_S20_L001_R1_001.unaln.bam 258818398 BAM S20_L001_R1 submitted_unaligned CPTAC3 33a94643-d0ae-44d5-ad58-6adceb3387a8 cfceab7a5f5c88db39c8dd744bedcefa {"aliquot_tag": "ALQ_17852837", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.miRNA-Seq.T.hg38 C3L-00610 CCRCC miRNA-Seq tumor CPT0025110006 a326b125-78d5-4634-bab5-2fe733b4d68e_mirnaseq_gdc_realn.bam 291852118 BAM harmonized CPTAC3 25af5d47-4d77-4855-b905-359d8aef121a d7854887d3f833ba3dbb48d2ffb2e4d2 {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.RNA-Seq.chimeric.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.chimeric.gdc_realn.bam 71756286 BAM chimeric harmonized CPTAC3 4f84d918-ca4c-42b0-a36d-bdabc399406b 3018fa680aff9805d7f721695966c42d {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.RNA-Seq.genomic.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.genomic.gdc_realn.bam 8475367775 BAM genomic harmonized CPTAC3 c63c95ea-90c1-4ac6-b67f-d1451302d010 167f9a3b5c126bcff3b67862a153234e {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.RNA-Seq.S10_L008_R1.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R1_001.fastq.gz 3968452040 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 c0b30aa7-5d95-40a0-aea3-07e351caa9ec 8e66721b0056538073a37e704aaa00fb {"aliquot_tag": "ALQ_17852837", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.RNA-Seq.S10_L008_R2.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R2_001.fastq.gz 4244509339 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 f82c169d-d8f8-4e98-8664-330850a873ce 2b4f0df69b7b2e3309b8d498db315bbc {"aliquot_tag": "ALQ_17852837", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.RNA-Seq.transcriptome.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.transcriptome.gdc_realn.bam 10933765625 BAM transcriptome harmonized CPTAC3 df377a95-b492-4da4-a0aa-67615b852ccf 1d84c5757e0142e51382fd5b675599b6 {"aliquot_tag": "ALQ_17852837", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.WGS.N C3L-00610 CCRCC WGS blood_normal CPT0029410002 CPT0029410002.WholeGenome.RP-1303.bam 62433229820 BAM submitted_aligned CPTAC3 2641c950-f284-4ebb-8fd8-ee6812dbef19 f98f414e271fa393fc7b654bd9d7ca76 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00610.WGS.N.hg38 C3L-00610 CCRCC WGS blood_normal CPT0029410002 1306f9b0-9606-4058-8e52-3c55f55459fb_gdc_realn.bam 91350155166 BAM harmonized CPTAC3 cf1f561b-bcc6-4e40-b09b-d57b1b9b6c70 896f7e0553de406f4d837006d140b1a4 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00610.WGS.T C3L-00610 CCRCC WGS tumor CPT0025110009 CPT0025110009.WholeGenome.RP-1303.bam 65253453283 BAM submitted_aligned CPTAC3 f60d7606-0b11-49e8-97d9-16730a58fe67 978018f2e7897b2fc415f14fe6de3733 {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.WGS.T.hg38 C3L-00610 CCRCC WGS tumor CPT0025110009 017c4dbc-9f4e-4b39-a208-bf2b0f01e4e8_gdc_realn.bam 95136944720 BAM harmonized CPTAC3 ae06cc02-91b4-420a-b04f-1e76954d1de0 53b326831aedb4c646b029e37041d0af {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.WXS.N C3L-00610 CCRCC WXS blood_normal CPT0029410002 CPT0029410002.WholeExome.RP-1303.bam 25888873837 BAM submitted_aligned CPTAC3 69ab5280-c0b0-4471-96b4-cf691a894daf 40a750c760e3d7de22c582a094efcc33 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00610.WXS.N.hg38 C3L-00610 CCRCC WXS blood_normal CPT0029410002 1306f9b0-9606-4058-8e52-3c55f55459fb_gdc_realn.bam 35291193266 BAM harmonized CPTAC3 7d5b0498-e194-42ae-8401-0b33a3c095a1 68b14ec0c7bbaba509642f6f1e193ed5 {"aliquot_tag": "ALQ_878517e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00610.WXS.T C3L-00610 CCRCC WXS tumor CPT0025110009 CPT0025110009.WholeExome.RP-1303.bam 20143103775 BAM submitted_aligned CPTAC3 f4948fcd-1013-40d1-a7b7-27a9aeb36d11 23bc6aa3cba10d29a223f777dc0d07fb {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00610.WXS.T.hg38 C3L-00610 CCRCC WXS tumor CPT0025110009 017c4dbc-9f4e-4b39-a208-bf2b0f01e4e8_gdc_realn.bam 27007249350 BAM harmonized CPTAC3 0dfd6c4e-b55b-4ac1-8139-8e6679e5d213 1c6b08d3fdd8bdb7a80a52d202ac57b3 {"aliquot_tag": "ALQ_873a35a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00614.MethArray.Green.Tpb C3L-00614 AML Methylation_Array tumor_peripheral_blood CPT0100860002 203561620040_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d75d4ffc-354b-4454-8c4c-2fb42bf9ff89 5d55af85238f7c417bd200a3cdedff22 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.MethArray.Red.Tpb C3L-00614 AML Methylation_Array tumor_peripheral_blood CPT0100860002 203561620040_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 2254c51f-b519-43bb-9322-66eb77712179 1d68b6b921fe7575a6cfd3069c80a03b {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.miRNA-Seq.S19_L001_R1.Tpb C3L-00614 AML miRNA-Seq tumor_peripheral_blood CPT0100820002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 245076521 BAM S19_L001_R1 submitted_unaligned CPTAC3 4f344299-d412-49c0-af90-7d638f18ea03 cc5e3f404474e12da25b37c2fa39a574 {"aliquot_tag": "ALQ_7721fbaf", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.miRNA-Seq.Tpb.hg38 C3L-00614 AML miRNA-Seq tumor_peripheral_blood CPT0100820002 a5b9642f-7fb4-4c33-ae12-d762869424dd_mirnaseq_gdc_realn.bam 263823776 BAM harmonized CPTAC3 2bc8c941-d543-41f7-b470-3f9b3ef61bb2 2cbe9f9a7967b9f8b0332ccca2689187 {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.RNA-Seq.chimeric.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.chimeric.gdc_realn.bam 30522074 BAM chimeric harmonized CPTAC3 0fc68c4c-2a33-4196-9710-8956d5412518 0940c957a768e6d70bad140c06e49dab {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.RNA-Seq.genomic.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.genomic.gdc_realn.bam 8528536865 BAM genomic harmonized CPTAC3 94d79d00-012d-4628-a6c2-08efbacac471 6c43beed2c6efa960eabb72169e9ab00 {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.RNA-Seq.S38_L006_R1.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R1_001.fastq.gz 4135328135 FASTQ S38_L006_R1 submitted_unaligned CPTAC3 2bf8703d-5fed-4b22-b691-88cfb6878a75 19d0801147e8f62b84957502c20da50b {"aliquot_tag": "ALQ_7721fbaf", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.RNA-Seq.S38_L006_R2.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R2_001.fastq.gz 4804140710 FASTQ S38_L006_R2 submitted_unaligned CPTAC3 08bf4689-a42c-4109-a788-26b0d2b9b71f a645ef8c930dbf06eb9c0be3a1c920d4 {"aliquot_tag": "ALQ_7721fbaf", "sample": "S38", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.RNA-Seq.transcriptome.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.transcriptome.gdc_realn.bam 12600962689 BAM transcriptome harmonized CPTAC3 a483be44-186b-4bc7-99e4-6580d164a2c7 642ac11ce02c38531d0145414a186a9e {"aliquot_tag": "ALQ_7721fbaf", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.WGS.Nbc C3L-00614 AML WGS buccal_normal CPT0100780003 CPT0100780003.WholeGenome.RP-1303.bam 77844032437 BAM submitted_aligned CPTAC3 a11349ce-adc8-4f25-97ca-ce379191b64e 7709d0467634fd44d6573d106b974603 {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00614.WGS.Nbc.hg38 C3L-00614 AML WGS buccal_normal CPT0100780003 982cbe51-15db-4db8-a0d3-fbedac2e1964_wgs_gdc_realn.bam 111429457255 BAM harmonized CPTAC3 a8b1aad9-afac-494b-a513-91889fe8be96 d84fadc9b1ed394ccd79c8d896ef8ebf {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00614.WGS.Tpb C3L-00614 AML WGS tumor_peripheral_blood CPT0100860002 CPT0100860002.WholeGenome.RP-1303.bam 71597308162 BAM submitted_aligned CPTAC3 3db4f1be-37be-4292-92e6-953df83b6050 d2c34417819bae264ff575d480c3c098 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.WGS.Tpb.hg38 C3L-00614 AML WGS tumor_peripheral_blood CPT0100860002 d7f7dd24-3343-4822-9866-9fe2e596e709_wgs_gdc_realn.bam 103826110647 BAM harmonized CPTAC3 bf93279a-b4a9-4d9c-b217-b5d5fc9db592 663da1e1be736ef94166c67cb33789f7 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.WXS.Nbc C3L-00614 AML WXS buccal_normal CPT0100780003 CPT0100780003.WholeExome.RP-1303.bam 19816702382 BAM submitted_aligned CPTAC3 ef74f45a-e22f-4989-be61-24c4acab583a 59785fdaa338f6155375000c762ce2e9 {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00614.WXS.Nbc.hg38 C3L-00614 AML WXS buccal_normal CPT0100780003 982cbe51-15db-4db8-a0d3-fbedac2e1964_wxs_gdc_realn.bam 28053111464 BAM harmonized CPTAC3 5f205cdc-4bf7-429f-8eb7-12d1720e26ca cb3ba4c120aafc23f4f830c0aa2537d3 {"aliquot_tag": "ALQ_bbc0614d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00614.WXS.Tpb C3L-00614 AML WXS tumor_peripheral_blood CPT0100860002 CPT0100860002.WholeExome.RP-1303.bam 23274573543 BAM submitted_aligned CPTAC3 fffa13f2-9453-414c-8ef6-d8a831016614 50a6c1670cadad987ff25f70c88ea157 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00614.WXS.Tpb.hg38 C3L-00614 AML WXS tumor_peripheral_blood CPT0100860002 d7f7dd24-3343-4822-9866-9fe2e596e709_wxs_gdc_realn.bam 32660492612 BAM harmonized CPTAC3 74a7355e-e1eb-4907-8356-43c0e90c369b 4225e8a5ced03580fff08615d00c58d3 {"aliquot_tag": "ALQ_82a15d6f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00617.MethArray.Green.Tbm C3L-00617 AML Methylation_Array tumor_bone_marrow CPT0325330002 205555390174_R08C01_Grn.idat 13677965 IDAT Green NA CPTAC3 ec2153a6-4b78-43f3-86d0-14c6c964a51a 8c907d8e2273c2d4c22def19c4a31c64 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.MethArray.Red.Tbm C3L-00617 AML Methylation_Array tumor_bone_marrow CPT0325330002 205555390174_R08C01_Red.idat 13677965 IDAT Red NA CPTAC3 ac763702-5267-414c-aaa0-5c917bc1f409 2e8cbe8882dfbd1143eaf4dff34d0ffb {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.miRNA-Seq.S8_L001_R1.Tbm C3L-00617 AML miRNA-Seq tumor_bone_marrow CPT0325340002 210702_UNC32-K00270_0289_AHKJ22BBXY_CCGTCC_S8_L001_R1_001.unaln.bam 333211425 BAM S8_L001_R1 submitted_unaligned CPTAC3 7e113971-7604-4219-8f6c-966af249b834 917932c3d9dd714756686711c585c270 {"aliquot_tag": "ALQ_ac4dfe90", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.miRNA-Seq.Tbm.hg38 C3L-00617 AML miRNA-Seq tumor_bone_marrow CPT0325340002 5e68f287-7c56-4d45-aa85-3c130e8a250d_mirnaseq_gdc_realn.bam 361802466 BAM harmonized CPTAC3 f7e6b5f9-670b-4954-9703-0e2bd2e9c9cd a407dcbf9432d54ca00c5a0fa7498dc5 {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.RNA-Seq.chimeric.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.chimeric.gdc_realn.bam 141154956 BAM chimeric harmonized CPTAC3 6ec9393a-3873-4dbe-b686-34b5bbb031bd cf4896c829410b9504220a065b993f5d {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.RNA-Seq.genomic.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.genomic.gdc_realn.bam 8532145032 BAM genomic harmonized CPTAC3 ae3ab3e8-067b-46aa-b848-aada1942c5d7 1469c04181c8982918ca2374b7786f6f {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.RNA-Seq.S17_L005_R1.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R1_001.fastq.gz 4548910658 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 4481a421-93e2-4023-ab56-355dd1c209e4 75a42dcb6a2c27df4c3bc3136199a64e {"aliquot_tag": "ALQ_ac4dfe90", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.RNA-Seq.S17_L005_R2.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R2_001.fastq.gz 4846840395 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 38596d93-afca-4dea-b256-bc13577c67a5 ab0d509c400799b8576d09dfc989d5b2 {"aliquot_tag": "ALQ_ac4dfe90", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.RNA-Seq.transcriptome.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.transcriptome.gdc_realn.bam 14591943825 BAM transcriptome harmonized CPTAC3 778f0d2b-4800-4dd1-a1a5-6b07db75b890 29af8a0c74655ed460fef3bceb110af7 {"aliquot_tag": "ALQ_ac4dfe90", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.WGS.Nbc C3L-00617 AML WGS buccal_normal CPT0325360003 CPT0325360003.WholeGenome.RP-2158.bam 59907711900 BAM submitted_aligned CPTAC3 a199503b-401c-4823-8bfb-db4fa01fc84e 3f97328dc174e8b9bd20d314edbf2f2c {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00617.WGS.Nbc.hg38 C3L-00617 AML WGS buccal_normal CPT0325360003 a4794da6-1610-49ca-a3c9-b703572c2990_wgs_gdc_realn.bam 211054240907 BAM harmonized CPTAC3 4fe3fee3-b27e-4159-9dc8-088f09e974f5 0fad9eb32ed40412541406f46c0b3f0c {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00617.WGS.Tbm C3L-00617 AML WGS tumor_bone_marrow CPT0325330002 CPT0325330002.WholeGenome.RP-2158.bam 58236728537 BAM submitted_aligned CPTAC3 49d38d6a-f48d-484b-9ce2-40fff8f8110b 8cbecb676f9b966bfd1e48911c7e5578 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.WGS.Tbm.hg38 C3L-00617 AML WGS tumor_bone_marrow CPT0325330002 8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wgs_gdc_realn.bam 164255332846 BAM harmonized CPTAC3 98eaebef-92a8-4da4-96f8-21ef7564d427 518768f551539b7a1823442ffb7e7d40 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.WXS.Nbc C3L-00617 AML WXS buccal_normal CPT0325360003 CPT0325360003.WholeExome.RP-1303.bam 28022105365 BAM submitted_aligned CPTAC3 55803aaa-b8b3-498e-8358-a701f570a515 c11f4e2e9b39fe21bd23f8a2e5b5d9dd {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00617.WXS.Nbc.hg38 C3L-00617 AML WXS buccal_normal CPT0325360003 a4794da6-1610-49ca-a3c9-b703572c2990_wxs_gdc_realn.bam 37483160612 BAM harmonized CPTAC3 330d8216-962d-487b-9f5b-c57c7ffb7706 cb6baf43df330f79eef32a28d7cdf086 {"aliquot_tag": "ALQ_a18a9d66", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-00617.WXS.Tbm C3L-00617 AML WXS tumor_bone_marrow CPT0325330002 CPT0325330002.WholeExome.RP-1303.bam 24132715634 BAM submitted_aligned CPTAC3 d63ff93d-2633-4955-a867-891d78cb13ac 2d95831874cb348232d4ce7932460e0f {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-00617.WXS.Tbm.hg38 C3L-00617 AML WXS tumor_bone_marrow CPT0325330002 8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wxs_gdc_realn.bam 33271906056 BAM harmonized CPTAC3 39e6f6b4-818a-422f-8ffe-543ff935c9c2 00e7d8404f8b659168f12cd29ccd42b0 {"aliquot_tag": "ALQ_1e6d2280", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-00622.MethArray.Green.T C3L-00622 PDA Methylation_Array tumor CPT0081360007 202184990008_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6b6be9d3-137b-44b5-b042-61225f851152 a70fd682c14535b650498540b8bb3587 {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.MethArray.Red.T C3L-00622 PDA Methylation_Array tumor CPT0081360007 202184990008_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 a022ac28-5dda-41d3-8be3-f8550e900121 988adceb0cd0c47fe2ee2057014ae79c {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.miRNA-Seq.A.hg38 C3L-00622 PDA miRNA-Seq tissue_normal CPT0081390006 80de0482-2005-4cde-a090-787942b243e0_mirnaseq_gdc_realn.bam 209187470 BAM harmonized CPTAC3 fbb2c2db-3c3b-4ff0-b0d6-7809b313ae0c 54bcf466f910c24166c5a666e4123e7c {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00622.miRNA-Seq.S3_L006_R1.T C3L-00622 PDA miRNA-Seq tumor CPT0081360010 181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L006_R1_001.unaln.bam 252390847 BAM S3_L006_R1 submitted_unaligned CPTAC3 35721dfb-f66c-4b1d-aa0d-62db5655d72d cedec7614f89269f329cbb2a6dc696d4 {"aliquot_tag": "ALQ_7d9af983", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.miRNA-Seq.S5_L001_R1.A C3L-00622 PDA miRNA-Seq tissue_normal CPT0081390006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L001_R1_001.unaln.bam 188653161 BAM S5_L001_R1 submitted_unaligned CPTAC3 383a8f83-fe88-4901-bf49-94f1bae48e2e fce6215ed915c4b2a7188ff19f14eccc {"aliquot_tag": "ALQ_fb2fa26", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00622.miRNA-Seq.T.hg38 C3L-00622 PDA miRNA-Seq tumor CPT0081360010 1ec94e74-c048-41b0-9e1f-e40597ed3469_mirnaseq_gdc_realn.bam 282150491 BAM harmonized CPTAC3 fcad9da4-4fdc-49f4-9f0c-569f0fedd487 45ba281c2925424b1e9dae72b3bb126e {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.RNA-Seq.chimeric.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.chimeric.gdc_realn.bam 100940354 BAM chimeric harmonized CPTAC3 e2b49ca0-11e1-480d-a867-50d67295054e a291c681956bc922a218c04f8cb7cf83 {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00622.RNA-Seq.chimeric.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.chimeric.gdc_realn.bam 68534286 BAM chimeric harmonized CPTAC3 b7e8128a-1005-43e9-b241-15cdb1be4786 e2276cd0acf9fe90fc4ecba9f2139763 {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.RNA-Seq.genomic.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.genomic.gdc_realn.bam 8441057751 BAM genomic harmonized CPTAC3 b79f6597-a4be-4a2a-9aa8-86017f4946ad 15e11f9b9f0a87720cfda55c7044ac7b {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00622.RNA-Seq.genomic.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.genomic.gdc_realn.bam 9986173536 BAM genomic harmonized CPTAC3 fd760bc3-b653-4fdd-8d81-f1b1143b0950 52f30a0c6d92de64dcabf4df61b4248d {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.RNA-Seq.S2_L001_R1.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4356844919 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 49777911-e523-49e1-b3cd-8c9c7691a5d2 fb0833a672566e5cd72991c4f45da7d6 {"aliquot_tag": "ALQ_7d9af983", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.RNA-Seq.S2_L001_R2.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4718562450 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 c273c1af-0c01-462a-baf6-6503fc50bbec 9d19362e9bb8655b84ad125925940952 {"aliquot_tag": "ALQ_7d9af983", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.RNA-Seq.S5_L008_R1.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3332254867 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 ee0d436f-ad91-401e-9b1a-8b0633bbbfe9 74744a18b76304579abf0227c7c79666 {"aliquot_tag": "ALQ_fb2fa26", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00622.RNA-Seq.S5_L008_R2.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R2_001.fastq.gz 3763713751 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 a511911a-2894-4e73-bd51-e368bafbff63 b526082dbba6fec3ca36fc4274f7d615 {"aliquot_tag": "ALQ_fb2fa26", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00622.RNA-Seq.transcriptome.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.transcriptome.gdc_realn.bam 9094546256 BAM transcriptome harmonized CPTAC3 9a51f989-7ef5-482a-9c5e-fa1e3791d4ac 479e070d5715fac28fd4e80989a624cd {"aliquot_tag": "ALQ_fb2fa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00622.RNA-Seq.transcriptome.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.transcriptome.gdc_realn.bam 11342145682 BAM transcriptome harmonized CPTAC3 abb26467-2647-45a1-81a9-f1f96c65a4b6 cace5dcaacb3f2156ed0cf19a33ce666 {"aliquot_tag": "ALQ_7d9af983", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.Targeted.T C3L-00622 PDA Targeted_Sequencing tumor CPT0081360007_1 CPT0081360007_1.CustomSelection.RP-1303.PDO-18786.bam 5958499527 BAM submitted_aligned CPTAC3 940f5482-3c2b-473b-a0bc-7d0255567628 cbb1dcaad04a272b6e44f71b1893278b {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.Targeted.T.hg38 C3L-00622 PDA Targeted_Sequencing tumor CPT0081360007_1 f9b14e8c-b1f5-4114-b3ef-31a7ae5532e7_targetedsequencing_gdc_realn.bam 8257676538 BAM harmonized CPTAC3 4fab2ed1-e49d-4f1e-9e13-0fd486fec590 edda37645ab0cf313dd8fd85927e3154 {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.WGS.N C3L-00622 PDA WGS blood_normal CPT0081400002 CPT0081400002.WholeGenome.RP-1303.bam 79537407886 BAM submitted_aligned CPTAC3 ce8ce487-cfb1-4d83-a914-ae3adaeca46f 80f9f68422e1023e80e15dd6e0ccf4de {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00622.WGS.N.hg38 C3L-00622 PDA WGS blood_normal CPT0081400002 3b67b553-c193-4023-8753-eeb151ffae62_gdc_realn.bam 119052835810 BAM harmonized CPTAC3 286cd6a8-1673-4386-90d5-551bf89e2b6f e2394dc5c4e95ec5dc5ab31e6b805ccf {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00622.WGS.T C3L-00622 PDA WGS tumor CPT0081360007 CPT0081360007.WholeGenome.RP-1303.bam 71404693314 BAM submitted_aligned CPTAC3 ca711955-1bb3-4ee5-92d9-9d832998787d 5bf192a1c6bb57ff4755d15633175d4e {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.WGS.T.hg38 C3L-00622 PDA WGS tumor CPT0081360007 f9eb7dc2-04db-4c26-9015-b75706d9d7b6_gdc_realn.bam 106232789967 BAM harmonized CPTAC3 086ec943-b53a-4ccd-9594-bb20d5535f9b 92435e1207f68e608eec5c5a06347df9 {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.WXS.N C3L-00622 PDA WXS blood_normal CPT0081400002 CPT0081400002.WholeExome.RP-1303.bam 28035042477 BAM submitted_aligned CPTAC3 71f4bc3a-aaa0-4505-8d94-9fd88b56d182 bd83df1a5a48316b47c4b2b8de161928 {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00622.WXS.N.hg38 C3L-00622 PDA WXS blood_normal CPT0081400002 3b67b553-c193-4023-8753-eeb151ffae62_gdc_realn.bam 39029753174 BAM harmonized CPTAC3 5bd0d4cc-13f1-46e3-9a8e-2bd4949ecda8 d9b86c3210394201d39d882b32361385 {"aliquot_tag": "ALQ_18ca6cf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00622.WXS.T C3L-00622 PDA WXS tumor CPT0081360007_1 CPT0081360007_1.WholeExome.RP-1303.bam 54745524469 BAM submitted_aligned CPTAC3 352d339b-f5e3-4c40-a835-d11b7c5bd67f 3434740289ae4403a03e4fdffe1cc814 {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.WXS.T C3L-00622 PDA WXS tumor CPT0081360007 CPT0081360007.WholeExome.RP-1303.bam 28280088542 BAM submitted_aligned CPTAC3 0a6242eb-77c2-4a4c-bcc7-3bed05c0e450 e69eaa6786df152f5fc2fa61d266f5ad {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.WXS.T.hg38 C3L-00622 PDA WXS tumor CPT0081360007_1 f9b14e8c-b1f5-4114-b3ef-31a7ae5532e7_wxs_gdc_realn.bam 75703277911 BAM harmonized CPTAC3 d1bcfd14-e445-4d20-885b-e3b3a32daf0d 78e5845566242658199139e7cde0bd1e {"aliquot_tag": "ALQ_4418de14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00622.WXS.T.hg38 C3L-00622 PDA WXS tumor CPT0081360007 f9eb7dc2-04db-4c26-9015-b75706d9d7b6_gdc_realn.bam 39118512150 BAM harmonized CPTAC3 72d992cf-f5a3-4a05-a8c4-c087ab3c321a b506e20504315429020a94bf62b79955 {"aliquot_tag": "ALQ_fae55d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.MethArray.Green.A C3L-00625 PDA Methylation_Array tissue_normal CPT0081500010 203561620054_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4d313f52-532c-4fde-abde-fd0837de0979 0701b6c85557fc52a45c1032d25d7561 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00625.MethArray.Green.T C3L-00625 PDA Methylation_Array tumor CPT0081470007 202178770008_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cbc049f4-85fe-4b23-a38a-d0adee0fb3f5 f362d0bc88c1676d39f1ad1d0bfd0d45 {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.MethArray.Red.A C3L-00625 PDA Methylation_Array tissue_normal CPT0081500010 203561620054_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 ffd83c2b-979b-472a-987e-999f15cbae9c e897c8ff7ccfe0bb688f0f0fe0495e1d {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00625.MethArray.Red.T C3L-00625 PDA Methylation_Array tumor CPT0081470007 202178770008_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 bc8a8b7d-6f73-444a-8b90-086aba79b386 6224a769fe7e9b92591b719363b2754e {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.miRNA-Seq.S20_L001_R1.T C3L-00625 PDA miRNA-Seq tumor CPT0081470010 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L001_R1_001.unaln.bam 261216042 BAM S20_L001_R1 submitted_unaligned CPTAC3 81385cdc-dacc-4e70-825f-be2e84d1e46f 55570112a1ae7592c7e36a9d7b221684 {"aliquot_tag": "ALQ_5dffe08b", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.miRNA-Seq.T.hg38 C3L-00625 PDA miRNA-Seq tumor CPT0081470010 cefb842d-0eee-4a00-8ccb-541a4655d842_mirnaseq_gdc_realn.bam 287470974 BAM harmonized CPTAC3 ea0a3383-e4b2-4cfa-b2e3-ba930473d1b3 0fd3c5751e37ef298ed9d468998959c0 {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.RNA-Seq.chimeric.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.chimeric.gdc_realn.bam 40055294 BAM chimeric harmonized CPTAC3 2d69979a-35f7-4b4d-8b19-493a41330948 873e70376e244db0b05eab9e5302a44d {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.RNA-Seq.genomic.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.genomic.gdc_realn.bam 9261751336 BAM genomic harmonized CPTAC3 24ebd715-743a-4e7b-8a74-8772d7ada81c e8299e90e8070f3cc1b66c8ed0aa88a6 {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.RNA-Seq.S1_L001_R1.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3611516224 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 637a1123-2d19-4fb8-8c2b-62b5244519c7 a64ac1353e2b3dd303b2e4ab64aac463 {"aliquot_tag": "ALQ_5dffe08b", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.RNA-Seq.S1_L001_R2.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3919468106 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 cc431b64-163e-4e98-a110-cb5692802d83 a99a010e9102f83437abee79861afbc5 {"aliquot_tag": "ALQ_5dffe08b", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.RNA-Seq.transcriptome.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.transcriptome.gdc_realn.bam 9052602368 BAM transcriptome harmonized CPTAC3 951f536d-b743-4497-9555-113a6a4edc19 fc71a4c086c2fc267db9b51c4cd63ad9 {"aliquot_tag": "ALQ_5dffe08b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.Targeted.T C3L-00625 PDA Targeted_Sequencing tumor CPT0081470007_1 CPT0081470007_1.CustomSelection.RP-1303.PDO-18786.bam 6419961426 BAM submitted_aligned CPTAC3 e6b40928-551e-427f-9b54-5e97c72fb0dc dffc15ba072a185875679a104b831795 {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.Targeted.T.hg38 C3L-00625 PDA Targeted_Sequencing tumor CPT0081470007_1 e9f04d79-6cd2-4618-98ae-f75b2bf403bc_targetedsequencing_gdc_realn.bam 8980121130 BAM harmonized CPTAC3 88d073f8-53af-489c-bb3e-cf9ace8467b8 b9b2a455e3b0b6f4a43967309ed3fc74 {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.WGS.A C3L-00625 PDA WGS tissue_normal CPT0081500010 CPT0081500010.WholeGenome.RP-1303.bam 64292770574 BAM submitted_aligned CPTAC3 623c1eb9-f32a-4b05-8b04-5193c50e9ffe ca0414dd20520e369f4d49a85d9cb4d8 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00625.WGS.A.hg38 C3L-00625 PDA WGS tissue_normal CPT0081500010 c24e555d-bc33-4b9d-a08a-cfd379ed765d_wgs_gdc_realn.bam 94046916326 BAM harmonized CPTAC3 5cecebe2-588a-41d9-9604-ae02ff2a35ab 952f060df51c609c47a6e85ab107c145 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00625.WGS.N C3L-00625 PDA WGS blood_normal CPT0081510001 CPT0081510001.WholeGenome.RP-1303.bam 69553825997 BAM submitted_aligned CPTAC3 14f2aedf-486f-4d3a-aa79-58f86a5fe667 373238c1265387b9854a503ca1ee23ca {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00625.WGS.N.hg38 C3L-00625 PDA WGS blood_normal CPT0081510001 cd0605d3-9330-41c3-904c-3fd3f3724e98_gdc_realn.bam 104347332492 BAM harmonized CPTAC3 acb673c1-1691-4dc0-87df-c45130643e4f c7a2bde890a2707c60611da9c690b8d9 {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00625.WGS.T C3L-00625 PDA WGS tumor CPT0081470007 CPT0081470007.WholeGenome.RP-1303.bam 61598345610 BAM submitted_aligned CPTAC3 1d309b50-7c31-4a8e-a7d5-f6f3b40e239b e2b06af697523d05ed78362fe097f11a {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.WGS.T.hg38 C3L-00625 PDA WGS tumor CPT0081470007 35cbfe6b-e6d9-4191-8f9f-c1a53233e611_gdc_realn.bam 90292248464 BAM harmonized CPTAC3 9a5c7c77-02ed-4bf2-bf16-f08947fabadd 05a529fa3ca48147f3a97b8ca00a791d {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.WXS.A C3L-00625 PDA WXS tissue_normal CPT0081500010 CPT0081500010.WholeExome.RP-1303.bam 27140036698 BAM submitted_aligned CPTAC3 a807c72b-4d9a-4d2a-99dd-ed3253c85b1d 433fb6d866ce8a2bcb32948b22cd1635 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00625.WXS.A.hg38 C3L-00625 PDA WXS tissue_normal CPT0081500010 c24e555d-bc33-4b9d-a08a-cfd379ed765d_wxs_gdc_realn.bam 36565288826 BAM harmonized CPTAC3 729afdfb-b616-4667-9572-3a0a37785b44 f01f9107ee167ef7980a536337831219 {"aliquot_tag": "ALQ_2483ef3e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00625.WXS.N C3L-00625 PDA WXS blood_normal CPT0081510001 CPT0081510001.WholeExome.RP-1303.bam 27744451883 BAM submitted_aligned CPTAC3 74524b70-a2d6-403e-9c84-946656fc796c 455e1c14a7fe408ec303d49a7e22bf8c {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00625.WXS.N.hg38 C3L-00625 PDA WXS blood_normal CPT0081510001 cd0605d3-9330-41c3-904c-3fd3f3724e98_gdc_realn.bam 37252952356 BAM harmonized CPTAC3 b7634f4b-db0d-458d-9d20-2053b98254dd bc48ae8fc97bc0c224f322fe1c28c186 {"aliquot_tag": "ALQ_77ffc759", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00625.WXS.T C3L-00625 PDA WXS tumor CPT0081470007_1 CPT0081470007_1.WholeExome.RP-1303.bam 70487273351 BAM submitted_aligned CPTAC3 7c93d9f1-ada1-4085-8ce1-2cdbffcdae7c d35e91055738b5c8110e3f73b193e699 {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.WXS.T C3L-00625 PDA WXS tumor CPT0081470007 CPT0081470007.WholeExome.RP-1303.bam 41471447570 BAM submitted_aligned CPTAC3 41249878-7a9e-4e87-b6e6-308572dc2136 880e3f573f36b1410733426f6ee960aa {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.WXS.T.hg38 C3L-00625 PDA WXS tumor CPT0081470007_1 e9f04d79-6cd2-4618-98ae-f75b2bf403bc_wxs_gdc_realn.bam 97609436413 BAM harmonized CPTAC3 cc51d894-8cba-4bc0-a3ec-b1af4036ec11 b326b05e22bdfa376ebbbfc100ad3edc {"aliquot_tag": "ALQ_e8aadcb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00625.WXS.T.hg38 C3L-00625 PDA WXS tumor CPT0081470007 35cbfe6b-e6d9-4191-8f9f-c1a53233e611_gdc_realn.bam 57568809799 BAM harmonized CPTAC3 e3b859e5-ffba-400e-9e76-723f6d33bf7d 109a0dea3cf7b3cfd92666067c5f5566 {"aliquot_tag": "ALQ_da804469", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.MethArray.Green.A C3L-00640 PDA Methylation_Array tissue_normal CPT0064570009 203561450048_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d249d09d-c099-4b47-9972-66cd0cfb6158 47f175d9d2ad7a1ff604d65377f678d0 {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.MethArray.Green.T C3L-00640 PDA Methylation_Array tumor CPT0064520010 202176300001_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8efb1d21-214c-495d-a868-29fc3ec955ad 195a48d2b626c9f9d995205797d9324e {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.MethArray.Red.A C3L-00640 PDA Methylation_Array tissue_normal CPT0064570009 203561450048_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 8687f994-2caa-4f29-9195-7a4ad451dc7f 7957d50701953db661c30c9d8370cfec {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.MethArray.Red.T C3L-00640 PDA Methylation_Array tumor CPT0064520010 202176300001_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 3693c70d-f8e7-411e-8c92-58844c2f1f74 04f069265efc4c3cdc16f6b18054e1c7 {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.miRNA-Seq.A.hg38 C3L-00640 PDA miRNA-Seq tissue_normal CPT0064570006 9778b551-538d-49de-873d-3480ff36d93c_mirnaseq_gdc_realn.bam 256166602 BAM harmonized CPTAC3 03230024-88e7-4539-849f-3a2abeb8810f 6bb5c33028fa7e9f09500a7abe561991 {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.miRNA-Seq.S4_L001_R1.A C3L-00640 PDA miRNA-Seq tissue_normal CPT0064570006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 229860266 BAM S4_L001_R1 submitted_unaligned CPTAC3 89f0efd7-3d60-4441-ae4d-f2b4162c4708 27a9b7f22ffd0b323de43cb3b49ce066 {"aliquot_tag": "ALQ_21699acf", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.miRNA-Seq.S5_L001_R1.T C3L-00640 PDA miRNA-Seq tumor CPT0064520007 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L001_R1_001.unaln.bam 194343137 BAM S5_L001_R1 submitted_unaligned CPTAC3 48c801c5-36b7-4856-b0c0-18b130aa0e0d 564624e83cbd316c342c8b47b6c21157 {"aliquot_tag": "ALQ_9e8e2529", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.miRNA-Seq.T.hg38 C3L-00640 PDA miRNA-Seq tumor CPT0064520007 8e057a91-a53b-4e85-bdf9-3a8bd834f4b5_mirnaseq_gdc_realn.bam 216877342 BAM harmonized CPTAC3 47d0e081-f2e3-4f35-9c81-1516fe07dd8f a97f1c95ec2729455db0529caf76b5a6 {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.RNA-Seq.chimeric.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.chimeric.gdc_realn.bam 134305622 BAM chimeric harmonized CPTAC3 6f62f766-236c-4a05-b2ab-f473fffe6c4f 23b091067beaf6e8c6d41286c2f2a209 {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.RNA-Seq.chimeric.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.chimeric.gdc_realn.bam 51723158 BAM chimeric harmonized CPTAC3 d3b590f2-568e-4659-8d30-19cd6ae7ba99 68d033c8a3fcd84f3dcad83dd790a469 {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.genomic.gdc_realn.bam 8486025625 BAM genomic harmonized CPTAC3 9b857ade-e233-41cf-9075-1b03eb78bd0e 3bede5f6063622cd6b1b18aeefb5f1e7 {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.genomic.gdc_realn.bam 6470793023 BAM genomic harmonized CPTAC3 f2232260-0ac5-4572-9555-afc79d89a817 ac1a026859f5b849e4245158454ee8d6 {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.RNA-Seq.S12_L003_R1.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 2855966677 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 33806087-ff71-44e1-86ac-67e5e48af603 b076f55b38e4cfc909761c6e6765e54d {"aliquot_tag": "ALQ_9e8e2529", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.RNA-Seq.S12_L003_R2.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 3207024272 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 1aae486e-75c6-44a9-a69a-56459137c071 33fd77ce5f4979fd79b6c434e7e0fa5e {"aliquot_tag": "ALQ_9e8e2529", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.RNA-Seq.S12_L008_R1.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R1_001.fastq.gz 3689683237 FASTQ S12_L008_R1 submitted_unaligned CPTAC3 6cc3e251-b039-4f7a-9f24-f013c999082e 6ae014b2ae3de4b2e6e3b079baa1f4a6 {"aliquot_tag": "ALQ_21699acf", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.RNA-Seq.S12_L008_R2.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R2_001.fastq.gz 4124785029 FASTQ S12_L008_R2 submitted_unaligned CPTAC3 1dad8c71-f547-4abf-bfeb-4c82d1f0a3a9 afa49be09a1c4b8a3839816bcd6c8033 {"aliquot_tag": "ALQ_21699acf", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.RNA-Seq.transcriptome.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.transcriptome.gdc_realn.bam 10522513183 BAM transcriptome harmonized CPTAC3 a6aac9d9-ac79-44ba-8472-f08c2a04cd48 5015c37df4c7b6a89c6e5854cf92bf5c {"aliquot_tag": "ALQ_21699acf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.RNA-Seq.transcriptome.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.transcriptome.gdc_realn.bam 8085496375 BAM transcriptome harmonized CPTAC3 b009c09e-96fc-4787-8eb5-ce53724d3806 5cd4da70ad4dfe0134ae05ed5bde248b {"aliquot_tag": "ALQ_9e8e2529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.Targeted.T C3L-00640 PDA Targeted_Sequencing tumor CPT0064520010_1 CPT0064520010_1.CustomSelection.RP-1303.PDO-18786.bam 5235727527 BAM submitted_aligned CPTAC3 8f62a0d4-8d30-4371-88dc-992d7e461b9c cfb819810b19ea8390d146a455d569bb {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.Targeted.T.hg38 C3L-00640 PDA Targeted_Sequencing tumor CPT0064520010_1 9fbe723b-720d-444d-9bec-9a75c2f4022d_targetedsequencing_gdc_realn.bam 7404642989 BAM harmonized CPTAC3 c112a8bf-2d6f-4392-a623-187df2a1392b 99ce762056ab70bf6466e6c3950c5979 {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.WGS.A C3L-00640 PDA WGS tissue_normal CPT0064570009 CPT0064570009.WholeGenome.RP-1303.bam 60228791575 BAM submitted_aligned CPTAC3 41b2231a-a3fb-4305-a121-6b9f8581eab8 a0eecb8c4201f0e6882656a4fc3358d0 {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.WGS.A.hg38 C3L-00640 PDA WGS tissue_normal CPT0064570009 e3fcb2e6-a532-445e-98f1-aeb3cf3e457f_wgs_gdc_realn.bam 88123286830 BAM harmonized CPTAC3 d3612e91-212b-4111-93c8-ca8c374139c1 615a79f2d7d78fca1264a4f781db6e83 {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.WGS.N C3L-00640 PDA WGS blood_normal CPT0066660002 CPT0066660002.WholeGenome.RP-1303.bam 78711340644 BAM submitted_aligned CPTAC3 3be61cb4-925c-4226-a3a9-1ff25032edfc 1e2b6b2bf669f24a962a21a8acf74204 {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00640.WGS.N.hg38 C3L-00640 PDA WGS blood_normal CPT0066660002 7d8b1cc7-e9d2-406f-ad58-80a02eb2ad47_gdc_realn.bam 116404250023 BAM harmonized CPTAC3 d6c5a3a7-bd00-43a1-91c5-eb44e001f740 0a2003ee3dc2f410517b33655cd3f617 {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00640.WGS.T C3L-00640 PDA WGS tumor CPT0064520010 CPT0064520010.WholeGenome.RP-1303.bam 73949219579 BAM submitted_aligned CPTAC3 6ae0abc1-c9da-4e24-9002-661a4fc9c997 7361034c4f5017d06dc8eddf96bb1f9d {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.WGS.T.hg38 C3L-00640 PDA WGS tumor CPT0064520010 2998d128-cf02-44f9-a832-ee94ce2d4d56_gdc_realn.bam 108723052847 BAM harmonized CPTAC3 ef416433-6b55-4966-9547-7c6f5733c31a 96a18efc215dc004a870c6abfc18b31c {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.WXS.A C3L-00640 PDA WXS tissue_normal CPT0064570009 CPT0064570009.WholeExome.RP-1303.bam 23903774152 BAM submitted_aligned CPTAC3 943b86fd-d700-4335-815e-220a3faf58af 70790c62c89e708933bffec8cda7831a {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.WXS.A.hg38 C3L-00640 PDA WXS tissue_normal CPT0064570009 e3fcb2e6-a532-445e-98f1-aeb3cf3e457f_wxs_gdc_realn.bam 32292285221 BAM harmonized CPTAC3 ab91f1f8-1f1c-4c97-a264-36d19213dea0 6fb99e2464c4d6d82eaf6018556d3a6d {"aliquot_tag": "ALQ_b1d6875e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00640.WXS.N C3L-00640 PDA WXS blood_normal CPT0066660002 CPT0066660002.WholeExome.RP-1303.bam 27191680931 BAM submitted_aligned CPTAC3 856bc8a8-a9ad-44a3-b6b3-98f7fa5a3de7 996e85022ab28ce4e0dcefb0ba164906 {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00640.WXS.N.hg38 C3L-00640 PDA WXS blood_normal CPT0066660002 7d8b1cc7-e9d2-406f-ad58-80a02eb2ad47_gdc_realn.bam 38708777307 BAM harmonized CPTAC3 cfd64f47-be0f-4cea-b148-888daa793c72 bd55966d7762fa22f47160a2e9b9f1fe {"aliquot_tag": "ALQ_a6f14e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00640.WXS.T C3L-00640 PDA WXS tumor CPT0064520010_1 CPT0064520010_1.WholeExome.RP-1303.bam 50680026522 BAM submitted_aligned CPTAC3 21f10009-3430-41e7-965b-2b923c5d1484 095cf8a927e3988fe9f3635f74b3dc03 {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.WXS.T C3L-00640 PDA WXS tumor CPT0064520010 CPT0064520010.WholeExome.RP-1303.bam 24514036458 BAM submitted_aligned CPTAC3 ee02cc9e-644a-4e7c-b7b5-86dfd26c29b3 05968fca508542927ed91cb097bbc1de {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.WXS.T.hg38 C3L-00640 PDA WXS tumor CPT0064520010_1 9fbe723b-720d-444d-9bec-9a75c2f4022d_wxs_gdc_realn.bam 70016410810 BAM harmonized CPTAC3 bc0b29fb-cfaa-4edf-b9ef-b4534bfee27b de0fe95deeacea2d802db4114ee98986 {"aliquot_tag": "ALQ_9f95f79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00640.WXS.T.hg38 C3L-00640 PDA WXS tumor CPT0064520010 2998d128-cf02-44f9-a832-ee94ce2d4d56_gdc_realn.bam 34321665174 BAM harmonized CPTAC3 cf2f53d0-1e24-43ff-a364-5b81c2ce1bd2 4ed2da5e9946939cdfc836e1d7503397 {"aliquot_tag": "ALQ_19f181cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.MethArray.Green.T C3L-00674 GBM Methylation_Array tumor CPT0064650009 202178770143_R04C01_Grn.idat 13676242 IDAT Green NA CPTAC3 c662fdd1-56ac-44e1-a5a3-a39762630667 4c638ba9f951a47576eb80a9ab8ce5ed {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.MethArray.Red.T C3L-00674 GBM Methylation_Array tumor CPT0064650009 202178770143_R04C01_Red.idat 13676242 IDAT Red NA CPTAC3 ed051d00-7903-4c3e-8b7a-62f9481737b4 e5c8d285781de5f0e345c988155863a7 {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.miRNA-Seq.S19_L001_R1.T C3L-00674 GBM miRNA-Seq tumor CPT0064650006 181113_UNC31-K00269_0164_AH23NNBBXY_TACAGC_S19_L001_R1_001.unaln.bam 190407441 BAM S19_L001_R1 submitted_unaligned CPTAC3 871bc308-0400-45f3-8938-afca148bc753 668e27b4ab24f296cdf907fd31127615 {"aliquot_tag": "ALQ_dd3dbb01", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.miRNA-Seq.T.hg38 C3L-00674 GBM miRNA-Seq tumor CPT0064650006 30e4ac2a-bd5f-4644-a3d4-573cccac81f2_mirnaseq_gdc_realn.bam 211611405 BAM harmonized CPTAC3 a3f87ee0-718d-48c8-90b5-e79220afcb9d cb4a14fdf1700a0ec42429ef7b48f0aa {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.RNA-Seq.chimeric.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.chimeric.gdc_realn.bam 33800023 BAM chimeric harmonized CPTAC3 de076b7d-5570-47ce-9db2-e3b16c68d6e2 eb2ddf749418c1b9376729819cc0a93e {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.RNA-Seq.genomic.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.genomic.gdc_realn.bam 9280943548 BAM genomic harmonized CPTAC3 38b70c75-2f50-497c-8cba-35b3ef485f52 6d9e1f3aa013532f797b609847dd01dd {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.RNA-Seq.S11_L003_R1.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 4303463091 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 7e77417b-9b2c-4504-827c-af04a22624be 1090ca720babee6564cc6a44c5226cc4 {"aliquot_tag": "ALQ_dd3dbb01", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.RNA-Seq.S11_L003_R2.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4600073376 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 eaf91490-e4f5-470e-83fd-9df23bc5a93a e690d2d973a92790da8975f1bb2ed9d6 {"aliquot_tag": "ALQ_dd3dbb01", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.RNA-Seq.transcriptome.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.transcriptome.gdc_realn.bam 10733575831 BAM transcriptome harmonized CPTAC3 ac186626-d75d-4762-8615-31bd9bc75028 98af3812ca44421254bc9e6c5cabd793 {"aliquot_tag": "ALQ_dd3dbb01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.WGS.N C3L-00674 GBM WGS blood_normal CPT0066670002 CPT0066670002.WholeGenome.RP-1303.bam 78380437858 BAM submitted_aligned CPTAC3 eb6ec959-77c9-4c70-8bbd-726817a98b17 fefd1a15233b2e7d9f9bbd3b121bea2c {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00674.WGS.N.hg38 C3L-00674 GBM WGS blood_normal CPT0066670002 7a56ec48-005d-401e-b8fc-30a60472483d_gdc_realn.bam 117728414212 BAM harmonized CPTAC3 8eb43b54-434f-4d96-884d-0f1d3a9cdc7b 99d0c1701c0627cbcaba4e9c1a2c0037 {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00674.WGS.T C3L-00674 GBM WGS tumor CPT0064650009 CPT0064650009.WholeGenome.RP-1303.bam 64020468730 BAM submitted_aligned CPTAC3 3b33374e-f8d6-4233-8673-686df51e608c 49a7d1bbed3da649861f6e864a483da2 {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.WGS.T.hg38 C3L-00674 GBM WGS tumor CPT0064650009 6d3bba42-a739-401a-b95c-44a01c7780c0_gdc_realn.bam 97182893414 BAM harmonized CPTAC3 8c1b29a0-d802-44cc-8629-74050711a8fa 4ce20c9b8cde041841d155205857c93f {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.WXS.N C3L-00674 GBM WXS blood_normal CPT0066670002 CPT0066670002.WholeExome.RP-1303.bam 30945238520 BAM submitted_aligned CPTAC3 e8e21a83-8e17-4c01-b242-f9381dddf432 4b775f259eebdfecb43b5d05fb338006 {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00674.WXS.N.hg38 C3L-00674 GBM WXS blood_normal CPT0066670002 7a56ec48-005d-401e-b8fc-30a60472483d_gdc_realn.bam 42513543162 BAM harmonized CPTAC3 4e1e2254-11a7-4904-8519-98ac7b81c50e 2f3d803672bcfa3b29e2b7b8e75e7ba1 {"aliquot_tag": "ALQ_370f3d51", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00674.WXS.T C3L-00674 GBM WXS tumor CPT0064650009 CPT0064650009.WholeExome.RP-1303.bam 31295052178 BAM submitted_aligned CPTAC3 fd282c80-59d6-4c11-a2cf-5a5b4f88c7d7 4a56b01d0d45f188da14bc30ff637b6c {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00674.WXS.T.hg38 C3L-00674 GBM WXS tumor CPT0064650009 6d3bba42-a739-401a-b95c-44a01c7780c0_gdc_realn.bam 43320163729 BAM harmonized CPTAC3 c7b6dac9-d738-416d-b61a-74c2f1be77aa a73c8a8680efbd27d1697de20c47d1cb {"aliquot_tag": "ALQ_4d82a690", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.MethArray.Green.T C3L-00677 GBM Methylation_Array tumor CPT0071100006 202176290047_R07C01_Grn.idat 13676225 IDAT Green NA CPTAC3 0c116252-8f2d-4c8e-b84a-be332bf3a7e4 083370fe915f29d687c819e10e851bdb {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.MethArray.Red.T C3L-00677 GBM Methylation_Array tumor CPT0071100006 202176290047_R07C01_Red.idat 13676225 IDAT Red NA CPTAC3 672eb168-ce96-4715-993f-80e36f4e215e 4ae1eed3aad96297e3776840e6889666 {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.miRNA-Seq.S45_L006_R1.T C3L-00677 GBM miRNA-Seq tumor CPT0071100009 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L006_R1_001.unaln.bam 209563675 BAM S45_L006_R1 submitted_unaligned CPTAC3 ae052b15-588d-4596-af58-46662b3e852a e3cf384ff3306531dae0642a8ef564c7 {"aliquot_tag": "ALQ_6f53661", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.miRNA-Seq.T.hg38 C3L-00677 GBM miRNA-Seq tumor CPT0071100009 d7481d68-fcff-4ec1-a2d5-1c837aada39a_mirnaseq_gdc_realn.bam 233302361 BAM harmonized CPTAC3 e4ff461b-7daf-4037-9290-4ddab4fb139d 172fe0fc7da7a4287b9cebedc7feac3d {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.RNA-Seq.chimeric.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.chimeric.gdc_realn.bam 49364752 BAM chimeric harmonized CPTAC3 9e78092c-adea-46cc-97ee-14f67043faed 510701c2d7d05c76a187371623036b6c {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.RNA-Seq.genomic.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.genomic.gdc_realn.bam 9224989980 BAM genomic harmonized CPTAC3 1d031db5-efff-4ec6-af8e-7855b32cf89e 346abb978df452b60b6ed624401766fd {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.RNA-Seq.S4_L007_R1.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R1_001.fastq.gz 4173547985 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 304fea20-f8c8-4481-b569-d4f292f18ac7 488157bf931467293d12358ef83a4bb5 {"aliquot_tag": "ALQ_6f53661", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.RNA-Seq.S4_L007_R2.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4396146449 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 792f7658-8838-4de8-956f-b0680b8609eb 044db6c08036f03955215ebde642d940 {"aliquot_tag": "ALQ_6f53661", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.RNA-Seq.transcriptome.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.transcriptome.gdc_realn.bam 9050301878 BAM transcriptome harmonized CPTAC3 8872e6dd-cce4-43d4-ad39-419250d91479 83fabfa483431eb349ad6d85369e1cb4 {"aliquot_tag": "ALQ_6f53661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.WGS.N C3L-00677 GBM WGS blood_normal CPT0071960002 CPT0071960002.WholeGenome.RP-1303.bam 62320693548 BAM submitted_aligned CPTAC3 2bb7a42a-27a8-427d-98de-306a282eeabf 1febf3d5b690c27f5a87239397bd63ef {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00677.WGS.N.hg38 C3L-00677 GBM WGS blood_normal CPT0071960002 5cee818c-61e8-4441-bd9a-5c984cde9c6b_gdc_realn.bam 94179524762 BAM harmonized CPTAC3 3c36b7bb-4d3d-4702-94f1-4618d96cbe82 f69151043c0d0fd2cf73ae839fddbcfc {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00677.WGS.T C3L-00677 GBM WGS tumor CPT0071100006 CPT0071100006.WholeGenome.RP-1303.bam 70990599021 BAM submitted_aligned CPTAC3 3d537bed-dd28-4e5e-9133-8b6a476120d2 86e41b742e4fdef425c9ef1d5877337b {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.WGS.T.hg38 C3L-00677 GBM WGS tumor CPT0071100006 1d6c4f0f-09c4-4472-a19e-30ee7e0ecf64_gdc_realn.bam 104577851813 BAM harmonized CPTAC3 9bbac005-ca4b-48ba-b0c5-2cfa573227e1 5ffda9e8c4342bccf8a7e2a9fedece59 {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.WXS.N C3L-00677 GBM WXS blood_normal CPT0071960002 CPT0071960002.WholeExome.RP-1303.bam 43110731198 BAM submitted_aligned CPTAC3 27b62576-2c2e-4013-9183-a920444738b3 155911a049352c926ff5b1346020de47 {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00677.WXS.N.hg38 C3L-00677 GBM WXS blood_normal CPT0071960002 5cee818c-61e8-4441-bd9a-5c984cde9c6b_gdc_realn.bam 59030038633 BAM harmonized CPTAC3 f2db30f8-5dd8-464d-a551-bd630609a7a6 1bf81be7f76168167b17801e58c97ea3 {"aliquot_tag": "ALQ_f2349824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00677.WXS.T C3L-00677 GBM WXS tumor CPT0071100006 CPT0071100006.WholeExome.RP-1303.bam 30353255153 BAM submitted_aligned CPTAC3 d4ae9b28-630b-4ab2-8110-e84f230b856c 180b61c016d74376ef10f60ca83418ca {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00677.WXS.T.hg38 C3L-00677 GBM WXS tumor CPT0071100006 1d6c4f0f-09c4-4472-a19e-30ee7e0ecf64_gdc_realn.bam 42117378519 BAM harmonized CPTAC3 6b20358c-b500-4e51-92cb-a8cf84bc13db 96e12d1bac7c0120d1a8418ba5b1ba8f {"aliquot_tag": "ALQ_964a2bf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.MethArray.Green.T C3L-00765 CCRCC Methylation_Array tumor CPT0015910006 202184990066_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6fe6ed90-3714-48fd-8256-84793941ad6d b61f57780df63f2aa041094bc9a2189a {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.MethArray.Red.T C3L-00765 CCRCC Methylation_Array tumor CPT0015910006 202184990066_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 40b5ad16-c4b6-4b24-bfd8-9523ed75652e 22189bc949fc322c1a4acea1ce930e26 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.miRNA-Seq.S10_L003_R1.T C3L-00765 CCRCC miRNA-Seq tumor CPT0015910008 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L003_R1_001.unaln.bam 271893346 BAM S10_L003_R1 submitted_unaligned CPTAC3 daf7c5f2-42a6-4133-9f30-6d4efedc70cc b5efef11720d9c179e96b26eabd9ace0 {"aliquot_tag": "ALQ_92e180be", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.miRNA-Seq.T.hg38 C3L-00765 CCRCC miRNA-Seq tumor CPT0015910008 7106fd9b-ff19-427f-abec-4d9bb2dbce09_mirnaseq_gdc_realn.bam 309300392 BAM harmonized CPTAC3 b019bf27-084f-4150-a277-8d588282123f 1e350a8573cfa2446dde0449154808e7 {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.RNA-Seq.chimeric.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.chimeric.gdc_realn.bam 91205230 BAM chimeric harmonized CPTAC3 0c43f2a9-fc46-40c0-9361-50f0ae2990ff 25a9a4f2999e566717b236e5ee63b51b {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.RNA-Seq.genomic.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.genomic.gdc_realn.bam 7661869384 BAM genomic harmonized CPTAC3 462f7b46-4438-4602-97b1-8e12fe2a785c fc7d5b35a2e68da1d0c6b21e75b13f82 {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.RNA-Seq.S6_L002_R1.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3650442725 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 d87a8aa1-7a2a-4637-9b19-543b5bc959b2 04aae6c1231999eb788ed942c820bae8 {"aliquot_tag": "ALQ_92e180be", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.RNA-Seq.S6_L002_R2.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4016717982 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 3b56ffa0-2871-4d85-b663-d6c666343b72 47fcf06657f37f6ef5abfcda7b59571f {"aliquot_tag": "ALQ_92e180be", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.RNA-Seq.transcriptome.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.transcriptome.gdc_realn.bam 8730220593 BAM transcriptome harmonized CPTAC3 9cb7b9c0-9fbc-4f7b-94da-c0bfe2a64d5b 8df68a250501e62d2d9fdda0048ee55f {"aliquot_tag": "ALQ_92e180be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.WGS.N C3L-00765 CCRCC WGS blood_normal CPT0018310001 CPT0018310001.WholeGenome.RP-1303.bam 66991096444 BAM submitted_aligned CPTAC3 5d99c71e-0455-4d03-b145-c41209857978 e7f441a7f12daec7c30b9ce3c14a4259 {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00765.WGS.N.hg38 C3L-00765 CCRCC WGS blood_normal CPT0018310001 309ea7b2-acb9-483e-b522-14e1bcc1518f_gdc_realn.bam 100395994243 BAM harmonized CPTAC3 2da471be-93f2-4674-82d7-93c868ab4faa 23aeb79bd19d828bdff83d6be85040fc {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00765.WGS.T C3L-00765 CCRCC WGS tumor CPT0015910006 CPT0015910006.WholeGenome.RP-1303.bam 97534714650 BAM submitted_aligned CPTAC3 27bbda3c-ba5b-44d8-bc27-823e57115fc4 8e583fc55c49f127a05742eb7e8a89a5 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.WGS.T.hg38 C3L-00765 CCRCC WGS tumor CPT0015910006 f5b3f122-436a-45d1-bb80-ee76ceaf7d48_gdc_realn.bam 147999449972 BAM harmonized CPTAC3 c2c631e0-2f69-4f59-8b69-b6a7f1332a2d f964cb0b44e9eaf50e2cc292abde7921 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.WXS.N C3L-00765 CCRCC WXS blood_normal CPT0018310001 CPT0018310001.WholeExome.RP-1303.bam 25839792239 BAM submitted_aligned CPTAC3 af7ef614-e012-4d40-8c4d-8e3b71680e76 5c4de4c89782a3601fe91b6a66bf9417 {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00765.WXS.N.hg38 C3L-00765 CCRCC WXS blood_normal CPT0018310001 309ea7b2-acb9-483e-b522-14e1bcc1518f_gdc_realn.bam 35636938165 BAM harmonized CPTAC3 9ddb3d69-5e2b-4cf1-981a-2139cc5cd750 f9c84d21e55e17d297d50fbc5d6856bb {"aliquot_tag": "ALQ_2b717abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00765.WXS.T C3L-00765 CCRCC WXS tumor CPT0015910006 CPT0015910006.WholeExome.RP-1303.bam 39646267371 BAM submitted_aligned CPTAC3 c8b5c3d2-5565-4fb5-994d-813ce68545cd b69019c4838bf8fdbc4b8cde1f2bc6c4 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00765.WXS.T.hg38 C3L-00765 CCRCC WXS tumor CPT0015910006 f5b3f122-436a-45d1-bb80-ee76ceaf7d48_gdc_realn.bam 54196402121 BAM harmonized CPTAC3 4325aa80-b930-4155-b568-84d10dcd336e f0873bdaa844856ad1fa02b714fd76a4 {"aliquot_tag": "ALQ_7559adb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.MethArray.Green.T C3L-00766 CCRCC Methylation_Array tumor CPT0025170009 202176290046_R03C01_Grn.idat 13676215 IDAT Green NA CPTAC3 fdaa5128-203e-4f85-bfdb-de35e0b11839 c4e416e5074c418515da36495c6d6b89 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.MethArray.Red.T C3L-00766 CCRCC Methylation_Array tumor CPT0025170009 202176290046_R03C01_Red.idat 13676215 IDAT Red NA CPTAC3 b3525088-db4f-44f6-bdb3-05997ebaf04a 57eb7d47f666d628f6182400c3970d73 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.miRNA-Seq.S3_L003_R1.T C3L-00766 CCRCC miRNA-Seq tumor CPT0025170006 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L003_R1_001.unaln.bam 277923704 BAM S3_L003_R1 submitted_unaligned CPTAC3 ff007739-de65-4113-b468-e75bb802de5d a0560ffc50c7569738975453f76a4884 {"aliquot_tag": "ALQ_98c5dd97", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.miRNA-Seq.T.hg38 C3L-00766 CCRCC miRNA-Seq tumor CPT0025170006 ec13b3c7-3d76-44fd-985d-de6545a78064_mirnaseq_gdc_realn.bam 305366484 BAM harmonized CPTAC3 2e47f06e-082a-44c9-88b4-a7ee0a71a1ed a080ab8ff34220d85b0cba29ec852920 {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.RNA-Seq.chimeric.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.chimeric.gdc_realn.bam 67050574 BAM chimeric harmonized CPTAC3 de104199-26d3-4ba1-85fe-fe31ca2522cd 477de5ca2dbfd9f3a0cf240e9f9f83d3 {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.RNA-Seq.genomic.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.genomic.gdc_realn.bam 9701576714 BAM genomic harmonized CPTAC3 0c37a3ce-3851-4636-acfd-55357f1514d1 23ffb65ccedcefa3c20af6fa201ed9bb {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.RNA-Seq.S13_L008_R1.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R1_001.fastq.gz 4618158717 FASTQ S13_L008_R1 submitted_unaligned CPTAC3 440a7243-ea6e-46a5-99ac-cc1602d1d0de 1cd3bc6d5f805cc8fb484b58b5a713ee {"aliquot_tag": "ALQ_98c5dd97", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.RNA-Seq.S13_L008_R2.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R2_001.fastq.gz 5124550137 FASTQ S13_L008_R2 submitted_unaligned CPTAC3 698425b6-73ab-4bb5-a2c1-6e1cdeb6b719 7cc4270b6e1c60fd9df0ac0f858d1bb3 {"aliquot_tag": "ALQ_98c5dd97", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.RNA-Seq.transcriptome.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.transcriptome.gdc_realn.bam 12007593326 BAM transcriptome harmonized CPTAC3 49ac173f-8bfd-4362-a511-d1aabaf40b98 17c111b1b5c55c3a9cde346a7064faa5 {"aliquot_tag": "ALQ_98c5dd97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.WGS.N C3L-00766 CCRCC WGS blood_normal CPT0029430002 CPT0029430002.WholeGenome.RP-1303.bam 68238309334 BAM submitted_aligned CPTAC3 d1ac49e7-e991-45a4-9c54-29efd43be065 f685b7185a9c765c12279c6785eddf46 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00766.WGS.N.hg38 C3L-00766 CCRCC WGS blood_normal CPT0029430002 83ea1247-e8c1-4bfc-a980-ff6559c85880_gdc_realn.bam 98180727025 BAM harmonized CPTAC3 1803562e-4a8e-44e0-a4f7-dba1b397b9bd 161652ca2dc1c697e880fc0596246bf4 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00766.WGS.T C3L-00766 CCRCC WGS tumor CPT0025170009 CPT0025170009.WholeGenome.RP-1303.bam 59276547171 BAM submitted_aligned CPTAC3 d7ec8ce7-5cd8-4e13-b89f-02f2cdb700f4 a328e1634965147b8c75411d21503a15 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.WGS.T.hg38 C3L-00766 CCRCC WGS tumor CPT0025170009 00e60ad6-4363-47ae-9f34-5a1f52af5ee6_gdc_realn.bam 87514577592 BAM harmonized CPTAC3 2a317b42-9ee9-49cc-a580-757ea5ed7a81 8401adb446c28444f95cc1aeda2a0c12 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.WXS.N C3L-00766 CCRCC WXS blood_normal CPT0029430002 CPT0029430002.WholeExome.RP-1303.bam 29143037375 BAM submitted_aligned CPTAC3 1dd08fef-e2e1-41d5-a020-25232a708b00 98d2c47a743ceaf04cb36d87f7789201 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00766.WXS.N.hg38 C3L-00766 CCRCC WXS blood_normal CPT0029430002 83ea1247-e8c1-4bfc-a980-ff6559c85880_gdc_realn.bam 40060374962 BAM harmonized CPTAC3 1a157182-31af-4eaf-a020-5c05d9db0845 7a56a105a7b24df85006add044d64327 {"aliquot_tag": "ALQ_fd454489", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00766.WXS.T C3L-00766 CCRCC WXS tumor CPT0025170009 CPT0025170009.WholeExome.RP-1303.bam 25079821840 BAM submitted_aligned CPTAC3 5eda6402-884b-4931-bba4-3485e3bb9c7b 47ff398d78e53e6700d45dbbc2c02953 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00766.WXS.T.hg38 C3L-00766 CCRCC WXS tumor CPT0025170009 00e60ad6-4363-47ae-9f34-5a1f52af5ee6_gdc_realn.bam 33777289548 BAM harmonized CPTAC3 718c13b4-3d2c-4c14-b26b-e296227d7794 5250027ebfa2103507d2e2e79efa3392 {"aliquot_tag": "ALQ_87ac006", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.ADD_c60f079.miRNA-Seq.S9_L001_R1.T C3L-00767 UCEC miRNA-Seq tumor CPT0026430006 180924_UNC31-K00269_0154_AHWTMLBBXX_CGTACG_S9_L001_R1_001.unaln.bam 214810997 BAM S9_L001_R1 submitted_unaligned CPTAC3 1bd8a552-1204-4e63-9c90-6667da726b21 7bb11989f43ee9d491e7b9b992095df6 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.ADD_c60f079.miRNA-Seq.T.hg38 C3L-00767 UCEC miRNA-Seq tumor CPT0026430006 0ebbce9f-8bc0-4f19-8b09-642abd559498_mirnaseq_gdc_realn.bam 244027324 BAM harmonized CPTAC3 447c423d-bcb4-4bf9-bf07-44fdb98d3564 45c0d8b4b428618ed7526ac455b8a29f {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.ADD_c60f079.RNA-Seq.chimeric.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.chimeric.gdc_realn.bam 75486033 BAM chimeric harmonized CPTAC3 45154a1d-82d6-4285-b704-dd904f5cbbb2 e49329b8133f60d5b58802087b783428 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.ADD_c60f079.RNA-Seq.genomic.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.genomic.gdc_realn.bam 9707034661 BAM genomic harmonized CPTAC3 e0579e3f-adcb-4f52-a6ba-89303f2f2bd2 63f21c1ff247f5237f82b2e1cdfa2519 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.ADD_c60f079.RNA-Seq.S15_L004_R1.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R1_001.fastq.gz 4544135726 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 398b396a-17ba-4210-a645-a0f049b6e01e f9a76468eaf9fc4d899e61790c5f33a4 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.ADD_c60f079.RNA-Seq.S15_L004_R2.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R2_001.fastq.gz 5025015263 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 b906f8b8-457b-4eed-bcc9-e9fb458b8bfa f0011b33a0727cc97b7c7ae3ee1524a3 {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.ADD_c60f079.RNA-Seq.transcriptome.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.transcriptome.gdc_realn.bam 10921961536 BAM transcriptome harmonized CPTAC3 bb933eb5-68d0-4011-8056-d8b84c6e6adf d53e6b9dca6be1469fe2409ae1571fff {"aliquot_tag": "ADD_c60f079", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.MethArray.Green.T C3L-00767 UCEC Methylation_Array tumor CPT0026430009 202184900148_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a9416b12-9b20-49ee-b8d0-dc2e5344a34a 99c3e0302c956615da71f3e2519f45b6 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.MethArray.Red.T C3L-00767 UCEC Methylation_Array tumor CPT0026430009 202184900148_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 a33dbc52-6727-4876-b5ca-6870e9429740 43c92e06568a994b0d030436bdc9e00c {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.RNA-Seq.chimeric.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.chimeric.gdc_realn.bam 394827161 BAM chimeric harmonized CPTAC3 fbd770e0-ac4e-4587-8427-020071f1a0d4 6a2e0d83d921f548a13496c21a867b72 {"aliquot_tag": "ALQ_1d44907a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.RNA-Seq.genomic.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.genomic.gdc_realn.bam 19015397301 BAM genomic harmonized CPTAC3 b80a98cc-1bea-4ef5-9d18-020ababd0aac cb8acdb6976afba819f847af5c5150bd {"aliquot_tag": "ALQ_1d44907a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.RNA-Seq.S14_R1.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R1_001.fastq.gz 12540854338 FASTQ S14_R1 submitted_unaligned CPTAC3 601208b3-7ac6-4498-823a-6f210bbcf1c3 b8a1bf2642243b41d045a11ae26b2071 {"aliquot_tag": "ALQ_1d44907a", "sample": "S14", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.RNA-Seq.S14_R2.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R2_001.fastq.gz 13069973825 FASTQ S14_R2 submitted_unaligned CPTAC3 58677cc5-5e2b-44d3-a7c4-14089345548a 5208ad73ed8c68c377395cd80cf56c88 {"aliquot_tag": "ALQ_1d44907a", "sample": "S14", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.RNA-Seq.transcriptome.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.transcriptome.gdc_realn.bam 11354200616 BAM transcriptome harmonized CPTAC3 c3e3e645-8713-48c9-93da-656c9467ad0a 38921c401c1bebef2dfcab3d2faaa551 {"aliquot_tag": "ALQ_1d44907a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.WGS.N C3L-00767 UCEC WGS blood_normal CPT0026490002 CPT0026490002.WholeGenome.RP-1303.bam 62340321709 BAM submitted_aligned CPTAC3 ac0f0450-8a1b-4289-bddb-a9355d1930bf 56c8691ff162c5337f71d74475a540e6 {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00767.WGS.N.hg38 C3L-00767 UCEC WGS blood_normal CPT0026490002 7993ec03-5c3f-4f2a-920d-33dbf262d40a_gdc_realn.bam 89893607496 BAM harmonized CPTAC3 d859af69-ac8f-4a4a-a376-9a6af50c07f3 872ffd61ff2bb19f8bf9c3765d93b700 {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00767.WGS.T C3L-00767 UCEC WGS tumor CPT0026430009 CPT0026430009.WholeGenome.RP-1303.bam 61485896986 BAM submitted_aligned CPTAC3 4d067b52-b0b1-4b49-9d8e-e7af4777913b 54c0a47e8bcce16af3acb2ecb7f4d113 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.WGS.T.hg38 C3L-00767 UCEC WGS tumor CPT0026430009 bf2c19ca-4c02-444c-8137-65a17c479448_gdc_realn.bam 88747509309 BAM harmonized CPTAC3 87dc9106-3c23-4cd3-8a85-6992800a5673 923ade9f2b8fe757e93691aa5240bb83 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.WXS.N C3L-00767 UCEC WXS blood_normal CPT0026490002 CPT0026490002.WholeExome.RP-1303.bam 29769671644 BAM submitted_aligned CPTAC3 cb17fbf3-1a58-4f4e-99dc-247f6b9cf870 b6f453e295e03d3778174b181d578eec {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00767.WXS.N.hg38 C3L-00767 UCEC WXS blood_normal CPT0026490002 7993ec03-5c3f-4f2a-920d-33dbf262d40a_gdc_realn.bam 41003919583 BAM harmonized CPTAC3 07e62483-1397-4efc-be62-9009f7568709 5c62b34411f47a9b43cfbbd4355f1730 {"aliquot_tag": "ALQ_41bd2cc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00767.WXS.T C3L-00767 UCEC WXS tumor CPT0026430009 CPT0026430009.WholeExome.RP-1303.bam 26347373805 BAM submitted_aligned CPTAC3 388eee21-fd29-4fce-995a-a5aff2058aed c5c23ba7f11e42148e7cfacadfa0a6a9 {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00767.WXS.T.hg38 C3L-00767 UCEC WXS tumor CPT0026430009 bf2c19ca-4c02-444c-8137-65a17c479448_gdc_realn.bam 35926223132 BAM harmonized CPTAC3 30f59c0f-6d2c-4513-beb7-0d9792fa3edb 8b46cb93806987036df97bb8e2819ddd {"aliquot_tag": "ALQ_9cdfede8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.MethArray.Green.T C3L-00769 UCEC Methylation_Array tumor CPT0026530009 202178770079_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 9317eab7-524c-4303-b9a5-6768489dabda a6f84f64ac53af84be4fcdaa3e5f79db {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.MethArray.Red.T C3L-00769 UCEC Methylation_Array tumor CPT0026530009 202178770079_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 081bab2c-f927-4d2a-81e4-a4b7c31ff60f 807a7c674aae95dc2794dd0be12beb7a {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.miRNA-Seq.S8_L001_R1.T C3L-00769 UCEC miRNA-Seq tumor CPT0026530006 180924_UNC31-K00269_0154_AHWTMLBBXX_GAGTGG_S8_L001_R1_001.unaln.bam 216444782 BAM S8_L001_R1 submitted_unaligned CPTAC3 e1acca7e-e5ed-4af2-a65b-992f575aee8c 29ab4d5d9db36a681b7343574927e4d1 {"aliquot_tag": "ALQ_c73c23dc", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.miRNA-Seq.T.hg38 C3L-00769 UCEC miRNA-Seq tumor CPT0026530006 5bfa1a75-40ed-44b5-bf39-eb1ba3dc4ba7_mirnaseq_gdc_realn.bam 237465745 BAM harmonized CPTAC3 0940f627-2764-47c3-a4c1-d169ab9ebb40 5970490273e998e7d146e90237a69e83 {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.chimeric.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.chimeric.gdc_realn.bam 77376353 BAM chimeric harmonized CPTAC3 01dc5eae-43e9-4388-9339-b59ec85885a6 24d85e902c063233d12604b98f600d7c {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.chimeric.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.chimeric.gdc_realn.bam 323928308 BAM chimeric harmonized CPTAC3 2d9986ac-a556-479e-9bbb-7045bbcac19b c5a97a20a82881d0c9144ed658a24b56 {"aliquot_tag": "ALQ_d61843df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.genomic.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.genomic.gdc_realn.bam 9433071307 BAM genomic harmonized CPTAC3 6bfd49fd-0d01-438a-9ff7-16b4096e80cf 4095614d60da97bc65a9bea6a0b149cf {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.genomic.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.genomic.gdc_realn.bam 12926231069 BAM genomic harmonized CPTAC3 dcce8499-d25c-4d11-8d69-016b63054533 303fafb132b57d99f567dd9d8486d0b9 {"aliquot_tag": "ALQ_d61843df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.S14_L004_R1.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4643837806 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 b279cd43-c02c-42f0-8c35-aaf3a15d1d3d 322fd12b424c284c802fad37f8a6598f {"aliquot_tag": "ALQ_c73c23dc", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.S14_L004_R2.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 5109670711 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 89545c45-58a9-44f7-a03e-f0c0cf2a901f 1e53b36b0310c85debee24514f152407 {"aliquot_tag": "ALQ_c73c23dc", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.S66_R1.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R1_001.fastq.gz 8184559425 FASTQ S66_R1 submitted_unaligned CPTAC3 7e487c86-29a5-49b1-b338-55e7cd72a05c 7bece81738a9255579effa6b1363e75d {"aliquot_tag": "ALQ_d61843df", "sample": "S66", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.S66_R2.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R2_001.fastq.gz 8474620961 FASTQ S66_R2 submitted_unaligned CPTAC3 9fec309f-a1cf-4f7c-a7ea-56ab202f59c8 d07372a00c2aaca4e6ac43dd9c40af06 {"aliquot_tag": "ALQ_d61843df", "sample": "S66", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.transcriptome.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.transcriptome.gdc_realn.bam 12940117831 BAM transcriptome harmonized CPTAC3 bd49e87f-dd54-4fe4-a22a-ebc4552bc3d8 4e93eadd30747b8496fee3cd7b457ed9 {"aliquot_tag": "ALQ_c73c23dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.RNA-Seq.transcriptome.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.transcriptome.gdc_realn.bam 6697533387 BAM transcriptome harmonized CPTAC3 c5f858c8-b710-4918-bb85-2f14bd6b7f3d 2fbadbb76a77708f4e2527812f9b8d06 {"aliquot_tag": "ALQ_d61843df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.WGS.N C3L-00769 UCEC WGS blood_normal CPT0026590002 CPT0026590002.WholeGenome.RP-1303.bam 68636298310 BAM submitted_aligned CPTAC3 39ac855d-fd71-48d7-a2ca-21fe1b5c8b20 41adcffc4ee0863e80e3245b2fd5f5bb {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00769.WGS.N.hg38 C3L-00769 UCEC WGS blood_normal CPT0026590002 4f90dd58-4dc8-4338-95ae-ce993e9370e4_gdc_realn.bam 99025304511 BAM harmonized CPTAC3 3a884473-fe8a-45e8-ae2d-eaaeaae500da 38d41bb26ad359044a1ce6f964f18e00 {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00769.WGS.T C3L-00769 UCEC WGS tumor CPT0026530009 CPT0026530009.WholeGenome.RP-1303.bam 71018112728 BAM submitted_aligned CPTAC3 35ad67d5-eb77-40a1-b79b-b2d29a582f22 977461a151497a80090dca22c3cc62a1 {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.WGS.T.hg38 C3L-00769 UCEC WGS tumor CPT0026530009 a0c6d074-5bd3-4293-a7f7-fc4366b926a4_gdc_realn.bam 104392725033 BAM harmonized CPTAC3 d8f8126d-326b-43ee-b830-62377996a4d3 9a2bb6eb8656dc8e853eba936dbd7389 {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.WXS.N C3L-00769 UCEC WXS blood_normal CPT0026590002 CPT0026590002.WholeExome.RP-1303.bam 29849468446 BAM submitted_aligned CPTAC3 2d3390de-60ff-4dc9-8c32-5bad6614de1f 07bd739e444c21622bc7123608d638eb {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00769.WXS.N.hg38 C3L-00769 UCEC WXS blood_normal CPT0026590002 4f90dd58-4dc8-4338-95ae-ce993e9370e4_gdc_realn.bam 40541407730 BAM harmonized CPTAC3 72f9d84b-db67-4e8a-89ce-b5e9ce97c214 87dd7bd6fed06bc52a36ef40f8ead516 {"aliquot_tag": "ALQ_8ae1ff64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00769.WXS.T C3L-00769 UCEC WXS tumor CPT0026530009 CPT0026530009.WholeExome.RP-1303.bam 22424633286 BAM submitted_aligned CPTAC3 718e2460-1419-4f91-81bf-1f5952dc75a4 6fe3fc9d4f9961542d98184873502dde {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00769.WXS.T.hg38 C3L-00769 UCEC WXS tumor CPT0026530009 a0c6d074-5bd3-4293-a7f7-fc4366b926a4_gdc_realn.bam 30684823149 BAM harmonized CPTAC3 fe1bab24-7e25-4cf8-ac7e-09ee67eedaa6 00b7274d4b0b98bff49e2b5c73d207f6 {"aliquot_tag": "ALQ_57833e4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.MethArray.Green.T C3L-00770 UCEC Methylation_Array tumor CPT0026650009 202176290047_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3adeb3c3-5b76-4ba6-9d19-c946107725fd 82a6b6a161250a836c919668f29ec5ed {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.MethArray.Red.T C3L-00770 UCEC Methylation_Array tumor CPT0026650009 202176290047_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 425ecafd-f6bc-4f29-a5a6-397432b57d2c d42d69a25e717dde9e9d9e530effb283 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.miRNA-Seq.S7_L001_R1.T C3L-00770 UCEC miRNA-Seq tumor CPT0026650006 180924_UNC31-K00269_0154_AHWTMLBBXX_GGTAGC_S7_L001_R1_001.unaln.bam 177436684 BAM S7_L001_R1 submitted_unaligned CPTAC3 8c69637c-46f1-4ef6-ab98-1a0aa42d28d3 d28b5146685c5bb265271f2ad0f673f4 {"aliquot_tag": "ALQ_cee8a4d2", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.miRNA-Seq.T.hg38 C3L-00770 UCEC miRNA-Seq tumor CPT0026650006 9b7b6856-9ba1-461c-b8b5-a9aa8815e9ed_mirnaseq_gdc_realn.bam 193518630 BAM harmonized CPTAC3 c13f62b3-51d5-4c6c-a2d0-1224f34ab987 ba3e985aa3b8391571f507d65534d156 {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.chimeric.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.chimeric.gdc_realn.bam 98350728 BAM chimeric harmonized CPTAC3 96c33386-a857-4bd5-ab24-f264d1c29f71 c15fed709c57de8721d0c0f1686be2bc {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.chimeric.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.chimeric.gdc_realn.bam 259951023 BAM chimeric harmonized CPTAC3 9545c789-0ae7-45ab-b0da-d297207571d2 af63c89b3343ede1066f341c29a6e9e5 {"aliquot_tag": "ALQ_2a4c6211", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.genomic.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.genomic.gdc_realn.bam 6726406648 BAM genomic harmonized CPTAC3 da2d5579-ad0a-477d-a7d3-ebbafb7aef53 ca85ee4091530a89ae0dfe341f1d63ba {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.genomic.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.genomic.gdc_realn.bam 13725926085 BAM genomic harmonized CPTAC3 0ab620f5-5d54-4f14-9714-23df0fa84f16 7e101cd17a553b508cdbd2661849f0ac {"aliquot_tag": "ALQ_2a4c6211", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.S11_L003_R1.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R1_001.fastq.gz 3210855581 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 866a0af4-d611-4690-89f7-a6bd28807494 2b0d8c2841c710d214b480f4e783dc0d {"aliquot_tag": "ALQ_cee8a4d2", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.S11_L003_R2.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R2_001.fastq.gz 3533356604 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 f5bbe1ad-856b-4c71-bd70-e538c2b1898e 054d58bbb400b02266092663d9ce74e0 {"aliquot_tag": "ALQ_cee8a4d2", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.S26_R1.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R1_001.fastq.gz 8514648651 FASTQ S26_R1 submitted_unaligned CPTAC3 45945e5a-1afb-495d-8656-0b7775a335f8 768353d108bb130daa8269c1ca9135b2 {"aliquot_tag": "ALQ_2a4c6211", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.S26_R2.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R2_001.fastq.gz 8870217673 FASTQ S26_R2 submitted_unaligned CPTAC3 8531e973-c902-4900-98f4-bed7378c7f2d feed2cc7f725f8a5929f4e0a53f8a0eb {"aliquot_tag": "ALQ_2a4c6211", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.transcriptome.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.transcriptome.gdc_realn.bam 8717596652 BAM transcriptome harmonized CPTAC3 08706e07-c04d-4884-abf3-d49e065dbd38 980d30fd7c7b62205b1c08e74e0edcf0 {"aliquot_tag": "ALQ_cee8a4d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.RNA-Seq.transcriptome.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.transcriptome.gdc_realn.bam 8139116770 BAM transcriptome harmonized CPTAC3 5f29f19d-eafb-4031-936e-be11ecd972ba ae1400064405b24e36b960573e69ad4d {"aliquot_tag": "ALQ_2a4c6211", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.WGS.N C3L-00770 UCEC WGS blood_normal CPT0026710002 CPT0026710002.WholeGenome.RP-1303.bam 65695085940 BAM submitted_aligned CPTAC3 d55d3120-8759-48e2-81e6-b86614d51a92 6d8853743b6ee3dbaec8d2764c6bfee7 {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00770.WGS.N.hg38 C3L-00770 UCEC WGS blood_normal CPT0026710002 330d5168-11d4-4bd3-924c-00a48a2e77f6_gdc_realn.bam 95365597650 BAM harmonized CPTAC3 ee622934-1e17-44f8-8d8d-41011cc7e50e da43568284f052e6caa6411875e4fe80 {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00770.WGS.T C3L-00770 UCEC WGS tumor CPT0026650009 CPT0026650009.WholeGenome.RP-1303.bam 63965991515 BAM submitted_aligned CPTAC3 abb63dbc-2305-4844-88bc-3cd1a40551c7 996d3d12d383f23c9380c13c67b47d11 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.WGS.T.hg38 C3L-00770 UCEC WGS tumor CPT0026650009 9c061602-847f-499d-bc0d-1761c1964373_gdc_realn.bam 93839041742 BAM harmonized CPTAC3 f9d8547d-be92-461a-b9ce-30c2deb01239 64dcf95546c2b6b5b896178661f1ea62 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.WXS.N C3L-00770 UCEC WXS blood_normal CPT0026710002 CPT0026710002.WholeExome.RP-1303.bam 25397251267 BAM submitted_aligned CPTAC3 7d1c9a83-b71e-41e4-b9bf-2597f5cb7c3c 5b8e41d702ee655568e09381e3810a7a {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00770.WXS.N.hg38 C3L-00770 UCEC WXS blood_normal CPT0026710002 330d5168-11d4-4bd3-924c-00a48a2e77f6_gdc_realn.bam 35106407511 BAM harmonized CPTAC3 44017bf5-1244-4370-a7df-d8d40c18841c 2372ea9addc8afe5ab40da8d028225f2 {"aliquot_tag": "ALQ_f75915ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00770.WXS.T C3L-00770 UCEC WXS tumor CPT0026650009 CPT0026650009.WholeExome.RP-1303.bam 26987625447 BAM submitted_aligned CPTAC3 78dba76c-b8e6-448d-9176-2d289ccd5b6a 9ff6a17bc56cac2f78a34fd55ec975e8 {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00770.WXS.T.hg38 C3L-00770 UCEC WXS tumor CPT0026650009 9c061602-847f-499d-bc0d-1761c1964373_gdc_realn.bam 37064864893 BAM harmonized CPTAC3 8db62179-1b8d-4ed0-b1eb-e7145b9db850 b82011f931c96823e4fc19b9cf3fe12b {"aliquot_tag": "ALQ_5e57b943", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.MethArray.Green.T C3L-00771 UCEC Methylation_Array tumor CPT0026770009 202176300111_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a5cd2f59-69f7-401d-8aea-2f9c82dc9a39 310edd6dd053300a7af56e91fc396582 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.MethArray.Red.T C3L-00771 UCEC Methylation_Array tumor CPT0026770009 202176300111_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 83d578da-c08c-4205-b455-d63b9744a4e7 8f8642c69b5c2c3275ac2cb7bf56e17f {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.miRNA-Seq.S6_L001_R1.T C3L-00771 UCEC miRNA-Seq tumor CPT0026770006 180924_UNC31-K00269_0154_AHWTMLBBXX_ACTGAT_S6_L001_R1_001.unaln.bam 432174685 BAM S6_L001_R1 submitted_unaligned CPTAC3 76022649-a402-48a3-99e1-00fa16269af7 dbe3c86d0c8785a113b5495518f1f0be {"aliquot_tag": "ALQ_7f742417", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.miRNA-Seq.T.hg38 C3L-00771 UCEC miRNA-Seq tumor CPT0026770006 4198cf25-ebbc-4c0d-85b8-0a80244da6d4_mirnaseq_gdc_realn.bam 475189502 BAM harmonized CPTAC3 ebf8fb51-88d0-4930-a4f1-115c4c183918 d89157175fc0c6a719dcc63b849fa128 {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.chimeric.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.chimeric.gdc_realn.bam 88741331 BAM chimeric harmonized CPTAC3 d870b4dc-2fc9-4872-b20f-503b04afce34 d365c85faa7f7ae4e39cc74091b4138b {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.chimeric.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.chimeric.gdc_realn.bam 146132743 BAM chimeric harmonized CPTAC3 3b4cd5cd-6bb7-4627-a9bf-3db67505a309 80806bfe68607e30336059933ad5802f {"aliquot_tag": "ALQ_5e200fd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.genomic.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.genomic.gdc_realn.bam 9944518528 BAM genomic harmonized CPTAC3 454ff995-5066-45ea-a081-4cf8d412d854 64f8a73cee3908b479b7832be6cab379 {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.genomic.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.genomic.gdc_realn.bam 7783018799 BAM genomic harmonized CPTAC3 d1a3f6d5-f277-44d3-b594-96d43d376f26 b84c8db45a0f62d70533cd1454f02dab {"aliquot_tag": "ALQ_5e200fd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.S10_L003_R1.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4604348415 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 a6fab0ab-ce4b-44cb-bf38-b9db4caa2e70 965d78f080bfd9143a57c00b68165303 {"aliquot_tag": "ALQ_7f742417", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.S10_L003_R2.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 5028202029 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 8a6ab525-f78c-4814-89f3-4b487a4a847c 1d547bb9642d1b46c48ab12c8231ffeb {"aliquot_tag": "ALQ_7f742417", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.S30_R1.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R1_001.fastq.gz 5048975062 FASTQ S30_R1 submitted_unaligned CPTAC3 f3d56bee-b335-4134-9011-cde4ad2af5a4 bb1e7d3a70c09edc5c47934e384ac2a8 {"aliquot_tag": "ALQ_5e200fd5", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.S30_R2.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R2_001.fastq.gz 5265782827 FASTQ S30_R2 submitted_unaligned CPTAC3 7c4721c6-6937-45a9-8adc-48940035dfd7 c79856c213517e63623ae39f28241867 {"aliquot_tag": "ALQ_5e200fd5", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.transcriptome.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.transcriptome.gdc_realn.bam 11630073946 BAM transcriptome harmonized CPTAC3 60cc01c3-f236-47a4-b372-edc914c7f544 0ee302e37a6036cfeed85a555a5bfaf6 {"aliquot_tag": "ALQ_7f742417", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.RNA-Seq.transcriptome.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.transcriptome.gdc_realn.bam 6306927230 BAM transcriptome harmonized CPTAC3 665262e9-7d16-4f16-8057-87494c351150 b7de8f8669f3f68a62260a8512d44267 {"aliquot_tag": "ALQ_5e200fd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.WGS.N C3L-00771 UCEC WGS blood_normal CPT0026830002 CPT0026830002.WholeGenome.RP-1303.bam 61742891656 BAM submitted_aligned CPTAC3 a40b90b2-42f6-433b-8481-4d51c7b89547 de385d5717220e2f18debc4279732c5c {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00771.WGS.N.hg38 C3L-00771 UCEC WGS blood_normal CPT0026830002 2bbab210-8789-4844-9de7-509231db0e6c_gdc_realn.bam 89972848085 BAM harmonized CPTAC3 4b0f79f5-6bce-4af8-a6eb-a52a896cfe48 cb5b9293fe08b024f785eecc991f7c70 {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00771.WGS.T C3L-00771 UCEC WGS tumor CPT0026770009 CPT0026770009.WholeGenome.RP-1303.bam 63721913030 BAM submitted_aligned CPTAC3 f40669d0-1780-47a6-a351-c7cdf1b0c837 ebfe62fddc9cd2091512af90ff5d3b90 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.WGS.T.hg38 C3L-00771 UCEC WGS tumor CPT0026770009 506829d5-3821-445a-b4c7-083fb483e8dc_gdc_realn.bam 93865585666 BAM harmonized CPTAC3 0459b7a4-b983-423b-bdf6-f7d93f8f5cba b03dae708c888259d5fa9d9c78d73f29 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.WXS.N C3L-00771 UCEC WXS blood_normal CPT0026830002 CPT0026830002.WholeExome.RP-1303.bam 23414811323 BAM submitted_aligned CPTAC3 a4741ac9-5aa3-4393-9f37-17775cc03183 765b17f15c047b4a41436c2bc294def2 {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00771.WXS.N.hg38 C3L-00771 UCEC WXS blood_normal CPT0026830002 2bbab210-8789-4844-9de7-509231db0e6c_gdc_realn.bam 31864285185 BAM harmonized CPTAC3 e757f535-dfb5-452d-9796-87c50fa8a73b d03eefe65ae1cf5fb95d765a14c618a6 {"aliquot_tag": "ALQ_7ccff41b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00771.WXS.T C3L-00771 UCEC WXS tumor CPT0026770009 CPT0026770009.WholeExome.RP-1303.bam 21505946970 BAM submitted_aligned CPTAC3 5672e64e-b7e9-43fd-9929-d14b1fdc3c40 67d4dba75a28449b425f1f7751d32997 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00771.WXS.T.hg38 C3L-00771 UCEC WXS tumor CPT0026770009 506829d5-3821-445a-b4c7-083fb483e8dc_gdc_realn.bam 29286181648 BAM harmonized CPTAC3 319b9314-8f00-49f7-899e-727a6b5fafd4 bc38fef7de1f41638f4ac26014800c05 {"aliquot_tag": "ALQ_efcb3986", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.MethArray.Green.T C3L-00780 UCEC Methylation_Array tumor CPT0070330010 202178770111_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 72495009-5514-40d5-bc3e-32347ac3065e 5babdb0b20fa6912139a84aa9dc77e40 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.MethArray.Red.T C3L-00780 UCEC Methylation_Array tumor CPT0070330010 202178770111_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 42dada8a-2498-4b15-9ba4-2a8a2ee338bc df38b7d98ffef27fbd2061bc4100f2d1 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.miRNA-Seq.S32_L007_R1.T C3L-00780 UCEC miRNA-Seq tumor CPT0070330007 181012_UNC32-K00270_0124_AH223CBBXY_GGCTAC_S32_L007_R1_001.unaln.bam 168848746 BAM S32_L007_R1 submitted_unaligned CPTAC3 865180b3-9f65-4d28-8abd-15bdc3fe3dd3 05d2a854c5c28d7d77dd3fa8d67c0e24 {"aliquot_tag": "ALQ_4d52cb09", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.miRNA-Seq.T.hg38 C3L-00780 UCEC miRNA-Seq tumor CPT0070330007 dfbaf280-c587-45b8-ba12-a6ca72623a22_mirnaseq_gdc_realn.bam 188536458 BAM harmonized CPTAC3 5689272f-448d-41fe-b1a9-68177ffd4a66 42014c0764bf8f4453f9185c5396b118 {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.RNA-Seq.chimeric.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.chimeric.gdc_realn.bam 53256049 BAM chimeric harmonized CPTAC3 527afb00-8ccb-4bf9-bd2a-7c56d381f14b c7c37121f19da539b00937eacbb2fdc2 {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.RNA-Seq.genomic.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.genomic.gdc_realn.bam 8650767163 BAM genomic harmonized CPTAC3 7a7a291b-7a43-4e4e-a9cf-a9f3b6a5c39d 29386b5c59ddd28783321d23df6470be {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.RNA-Seq.S4_L006_R1.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R1_001.fastq.gz 4149226403 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 433f4fc5-843a-4a1b-b993-dd413244a03f b61cde914849aace27fc2f8722612662 {"aliquot_tag": "ALQ_4d52cb09", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.RNA-Seq.S4_L006_R2.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4444671341 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 0ad8238f-6db6-42c0-ae96-4d7a5f0e7e7b 278093ac8c4d98aa4e7641beed7d9b7d {"aliquot_tag": "ALQ_4d52cb09", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.RNA-Seq.transcriptome.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.transcriptome.gdc_realn.bam 10943566038 BAM transcriptome harmonized CPTAC3 8b4afef4-f65f-4553-b635-abccc540b042 ac2a5272c64565909eaabcf107dd88a9 {"aliquot_tag": "ALQ_4d52cb09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.WGS.N C3L-00780 UCEC WGS blood_normal CPT0071010002 CPT0071010002.WholeGenome.RP-1303.bam 74194572417 BAM submitted_aligned CPTAC3 21301d06-4d64-4205-9ad8-613998b0e5b7 7143defc8b08a9ff4fc4a21821bf19d7 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00780.WGS.N.hg38 C3L-00780 UCEC WGS blood_normal CPT0071010002 5b8ab142-f4da-4643-8c68-db13cfd072b2_gdc_realn.bam 110619360206 BAM harmonized CPTAC3 30d98464-2799-4a96-ac54-29b14e1512cc 53e7c9991a6a583bf6448c8273ced620 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00780.WGS.T C3L-00780 UCEC WGS tumor CPT0070330010 CPT0070330010.WholeGenome.RP-1303.bam 89473105086 BAM submitted_aligned CPTAC3 8d3ff099-3d93-421a-a156-f8b3d14e59db 5d034ebcc4f435863057ebf8f6759da6 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.WGS.T.hg38 C3L-00780 UCEC WGS tumor CPT0070330010 112790c0-190c-469d-9a8f-27abdcd1bea6_gdc_realn.bam 139364151558 BAM harmonized CPTAC3 8396af38-2c13-409d-a101-ea1a579fc1e7 ecafc91c4ae0f5fbb149e61eda3c579a {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.WXS.N C3L-00780 UCEC WXS blood_normal CPT0071010002 CPT0071010002.WholeExome.RP-1303.bam 37646949411 BAM submitted_aligned CPTAC3 c43591ad-8ea4-48dc-a993-19a339c73769 cea286a2f64b79a568e3b06fc5029f39 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00780.WXS.N.hg38 C3L-00780 UCEC WXS blood_normal CPT0071010002 5b8ab142-f4da-4643-8c68-db13cfd072b2_gdc_realn.bam 51120636409 BAM harmonized CPTAC3 c715d91e-8c73-4dfb-8bc8-7b40b85a66c3 d6311e13b52698d6014d23fff8c3be26 {"aliquot_tag": "ALQ_671b15fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00780.WXS.T C3L-00780 UCEC WXS tumor CPT0070330010 CPT0070330010.WholeExome.RP-1303.bam 23482556781 BAM submitted_aligned CPTAC3 14bde12d-beb9-43d7-be78-44127b3e34f8 ed8d9fe2316fe3826a060d8698a42adf {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00780.WXS.T.hg38 C3L-00780 UCEC WXS tumor CPT0070330010 112790c0-190c-469d-9a8f-27abdcd1bea6_gdc_realn.bam 32744912561 BAM harmonized CPTAC3 6ac5dcc3-1579-4f8f-9974-8183e970c433 1e69bace9d35af952147dedec865ed88 {"aliquot_tag": "ALQ_ca2d6feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.ANN_1ddb469c.WGS.N C3L-00781 UCEC WGS blood_normal CPT0071030002 CPT0071030002.WholeGenome.RP-1303.bam 76522999929 BAM submitted_aligned CPTAC3 327fb993-6554-45a4-b193-65d43fb3c42b d8d4ce4472f11aedcf72cbe65bda3e09 {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00781.ANN_1ddb469c.WGS.N.hg38 C3L-00781 UCEC WGS blood_normal CPT0071030002 f66e9c98-6bf9-401d-908e-6647373ab6ec_gdc_realn.bam 114863684048 BAM harmonized CPTAC3 a0b19c7e-733f-460c-969d-2e6954549afb 138fea9a86f7a09a7d0818998c45ef0e {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00781.ANN_1ddb469c.WXS.N C3L-00781 UCEC WXS blood_normal CPT0071030002 CPT0071030002.WholeExome.RP-1303.bam 35606198342 BAM submitted_aligned CPTAC3 c0d845c2-393e-4b9e-b34a-4e3b1bb166a3 87f6e19d503bfc8445c8fbbf32cca879 {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00781.ANN_1ddb469c.WXS.N.hg38 C3L-00781 UCEC WXS blood_normal CPT0071030002 f66e9c98-6bf9-401d-908e-6647373ab6ec_gdc_realn.bam 49744809841 BAM harmonized CPTAC3 337eceaf-f9ad-4aca-8ba6-501faf696188 95ca0fe960a07000aaf65d2f4ea3c3ac {"aliquot_tag": "ANN_1ddb469c", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00781.ANN_a956badb.MethArray.Green.T C3L-00781 UCEC Methylation_Array tumor CPT0070260009 202176290047_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 290a9e3a-67ab-4851-a507-94570aa3439c bac3e6a864770902817d1e10216a89d3 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.ANN_a956badb.MethArray.Red.T C3L-00781 UCEC Methylation_Array tumor CPT0070260009 202176290047_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 efa8dd50-9837-49e3-b6b7-d9034df3e4d8 6061482db63f53c7240b88d965a29ac6 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.ANN_a956badb.WGS.T C3L-00781 UCEC WGS tumor CPT0070260009 CPT0070260009.WholeGenome.RP-1303.bam 61713544130 BAM submitted_aligned CPTAC3 cfbec75e-6ba8-4141-8613-097815a13b49 e08bcaf607f5c15c4f2e535c068c05e0 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.ANN_a956badb.WGS.T.hg38 C3L-00781 UCEC WGS tumor CPT0070260009 10716ab4-7a85-4ad5-a1e0-ff7e1339aa0a_gdc_realn.bam 92149718911 BAM harmonized CPTAC3 c118fa04-a798-4523-b02f-4f292c61f47c 4954cfebbd8b817346d9fca56236cb88 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.ANN_a956badb.WXS.T C3L-00781 UCEC WXS tumor CPT0070260009 CPT0070260009.WholeExome.RP-1303.bam 30859526265 BAM submitted_aligned CPTAC3 3aafa910-9eeb-40ce-8373-8188414d1c9f 401abe17effc62381695e6c55d9b43a8 {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.ANN_a956badb.WXS.T.hg38 C3L-00781 UCEC WXS tumor CPT0070260009 10716ab4-7a85-4ad5-a1e0-ff7e1339aa0a_gdc_realn.bam 41882383613 BAM harmonized CPTAC3 44dc38c6-1db6-4fe2-9a78-154b71409bbd e246dd6f27d7abc6f038b174d37d83cb {"aliquot_tag": "ANN_a956badb", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.miRNA-Seq.S14_L001_R1.T C3L-00781 UCEC miRNA-Seq tumor CPT0070260006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L001_R1_001.unaln.bam 212368435 BAM S14_L001_R1 submitted_unaligned CPTAC3 9b016aeb-1877-4ca3-a4ef-13453361ce14 73410e463b6adff27b41f4db9a103c37 {"aliquot_tag": "ALQ_39e9a74a", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.miRNA-Seq.T.hg38 C3L-00781 UCEC miRNA-Seq tumor CPT0070260006 16c70fb3-9961-4d76-b7de-ddcab4904e92_mirnaseq_gdc_realn.bam 240387591 BAM harmonized CPTAC3 5a2e27da-e780-473a-bfa3-a19d506257b5 bf5aaaa444700fdbc18e89152762acf5 {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.chimeric.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.chimeric.gdc_realn.bam 28195554 BAM chimeric harmonized CPTAC3 745e57a9-b464-416e-acc8-e9b34f788f1b 5c3d64d2fcfc001182522644a4ebefd2 {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.chimeric.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.chimeric.gdc_realn.bam 282982914 BAM chimeric harmonized CPTAC3 ba8b9c3e-9bd2-454f-9d70-2b773a32b18e 9009d997387208df09562c96ccd37011 {"aliquot_tag": "ALQ_ba880251", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.genomic.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.genomic.gdc_realn.bam 8243971457 BAM genomic harmonized CPTAC3 1d2a5ae7-0f95-45a7-b532-56db7f5ee886 cdb5d156ca9cc5389abc44c585b2215b {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.genomic.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.genomic.gdc_realn.bam 12648938511 BAM genomic harmonized CPTAC3 9f27f7a8-f073-43d3-b51d-8fde9a6bc352 39470d2afcc1c629936c427f6ec67e98 {"aliquot_tag": "ALQ_ba880251", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.S78_R1.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R1_001.fastq.gz 7512681971 FASTQ S78_R1 submitted_unaligned CPTAC3 f2fd1066-0297-4db5-ac1d-cfb1f112b621 1dec72c0ba58db0fa222dcdc96728fac {"aliquot_tag": "ALQ_ba880251", "sample": "S78", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.S78_R2.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R2_001.fastq.gz 7669099669 FASTQ S78_R2 submitted_unaligned CPTAC3 f85377c2-8c07-46f7-aa32-f185e85b2027 1f606dea998b03b79b4a97c4742c18c9 {"aliquot_tag": "ALQ_ba880251", "sample": "S78", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.S9_L003_R1.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R1_001.fastq.gz 3804671211 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 0de24a9c-ebaa-45df-8405-9c753dce28b2 471bfdb06e9b5b3f5c9cf3c166134ce3 {"aliquot_tag": "ALQ_39e9a74a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.S9_L003_R2.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R2_001.fastq.gz 4098934685 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 8fe73704-391c-40df-b4ed-7ddab091670b db856df64751866496d961064ac5bd6b {"aliquot_tag": "ALQ_39e9a74a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.transcriptome.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.transcriptome.gdc_realn.bam 9858641230 BAM transcriptome harmonized CPTAC3 4502652f-9bcb-451f-a175-c6006ca2967e 3effbe59924585f0272a70f99237a8e7 {"aliquot_tag": "ALQ_39e9a74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00781.RNA-Seq.transcriptome.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.transcriptome.gdc_realn.bam 8486219451 BAM transcriptome harmonized CPTAC3 bb4f39ca-6a9b-487a-8450-814abb7b8d66 ac5aab64d25fd7ae36b6d0fb502cfcc1 {"aliquot_tag": "ALQ_ba880251", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.MethArray.Green.T C3L-00789 CCRCC Methylation_Array tumor CPT0016030017 202184900127_R08C01_Grn.idat 13676248 IDAT Green NA CPTAC3 cdf5b3c0-a599-4935-81e4-85c6e523e503 0eaff6d33ea8094057a10a37dd5283b6 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.MethArray.Red.T C3L-00789 CCRCC Methylation_Array tumor CPT0016030017 202184900127_R08C01_Red.idat 13676248 IDAT Red NA CPTAC3 57aeddb4-886d-4b50-a400-6398e0fa5852 ddfed4fb7bf9dc0cdd154f49d24f3367 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.miRNA-Seq.S25_L002_R1.T C3L-00789 CCRCC miRNA-Seq tumor CPT0016030014 180924_UNC31-K00269_0154_AHWTMLBBXX_TCGAAG_S25_L002_R1_001.unaln.bam 261982729 BAM S25_L002_R1 submitted_unaligned CPTAC3 d8ba475d-0704-4194-b079-f8f4ea57bfaf 1378c6ac9fd93aaa7aa0665702f7ac08 {"aliquot_tag": "ALQ_ee6be5e1", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.miRNA-Seq.T.hg38 C3L-00789 CCRCC miRNA-Seq tumor CPT0016030014 932e1b51-4093-4066-a97b-b1da465a8ded_mirnaseq_gdc_realn.bam 291421997 BAM harmonized CPTAC3 6583572e-16d7-4612-bfff-06ee418fb4ac e530c197808b5180ee8a011d4412c9c1 {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.RNA-Seq.chimeric.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.chimeric.gdc_realn.bam 94063903 BAM chimeric harmonized CPTAC3 31a31e53-1649-4068-8af3-b2839d2c844e 29c15e779257ef7351df05cd67e7dc2e {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.RNA-Seq.genomic.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.genomic.gdc_realn.bam 9471814083 BAM genomic harmonized CPTAC3 238eebab-bc5e-4b3d-a93a-37080a14684e addbf2238029522ea7a2cc1d1ce2ca13 {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.RNA-Seq.S11_L003_R1.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R1_001.fastq.gz 4725773409 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 21363c94-8e2c-4e7a-bcce-f2de1c193ca0 5cb34ccb175a341b22a5d9f6b484ce9b {"aliquot_tag": "ALQ_ee6be5e1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.RNA-Seq.S11_L003_R2.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R2_001.fastq.gz 5105086963 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 f0ad7dbf-4e74-4255-834d-45fe2ad1cf3d 409251892f28fc20ea45f31fdd6c5cb2 {"aliquot_tag": "ALQ_ee6be5e1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.RNA-Seq.transcriptome.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.transcriptome.gdc_realn.bam 12738859942 BAM transcriptome harmonized CPTAC3 34e36b40-1780-4d7e-bd4d-74dc5db21255 a2761dbaedd6dd62a7fe55f72d8a2812 {"aliquot_tag": "ALQ_ee6be5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.WGS.N C3L-00789 CCRCC WGS blood_normal CPT0018330002 CPT0018330002.WholeGenome.RP-1303.bam 82716651874 BAM submitted_aligned CPTAC3 bb42ca23-3c85-4856-81c4-4d65860bd11c 119bfe0b4dc03f4e24540e42514c00bb {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00789.WGS.N.hg38 C3L-00789 CCRCC WGS blood_normal CPT0018330002 ff246444-2891-4a80-938b-cf5062af1a48_gdc_realn.bam 129442613107 BAM harmonized CPTAC3 34b9834d-1f0d-40e6-ab43-1950a3b78fdb 597cedeec95e5180e3a6c710e6a10a0b {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00789.WGS.T C3L-00789 CCRCC WGS tumor CPT0016030017 CPT0016030017.WholeGenome.RP-1303.bam 82557681660 BAM submitted_aligned CPTAC3 fe731431-7a47-4b96-aca4-2310c2c8171c b95190e82959c488f4968ab8b105bbe6 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.WGS.T.hg38 C3L-00789 CCRCC WGS tumor CPT0016030017 b0685694-85b6-45dc-bb9b-c08706fe4ea6_gdc_realn.bam 123206352643 BAM harmonized CPTAC3 e69186ee-6ff0-4a41-ba3d-f32c31a57671 b4f4a66909e4ce6cbc9fa82812d5e833 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.WXS.N C3L-00789 CCRCC WXS blood_normal CPT0018330002 CPT0018330002.WholeExome.RP-1303.bam 28792493119 BAM submitted_aligned CPTAC3 df9838a4-c512-4d05-b7c4-fd8c6c293e8d 3c976ede356e2a7afb362ddf0c3a229f {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00789.WXS.N.hg38 C3L-00789 CCRCC WXS blood_normal CPT0018330002 ff246444-2891-4a80-938b-cf5062af1a48_gdc_realn.bam 39223534652 BAM harmonized CPTAC3 b3cfca38-2252-40ee-bca6-65fd3b6d87aa cd52248375b0bc0e6a6559f52f09b115 {"aliquot_tag": "ALQ_c8b87866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00789.WXS.T C3L-00789 CCRCC WXS tumor CPT0016030017 CPT0016030017.WholeExome.RP-1303.bam 30532282451 BAM submitted_aligned CPTAC3 da7170c3-49ad-4208-a561-ff04c41c4a09 157581e4dc10ec710ab13710a58bb9de {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00789.WXS.T.hg38 C3L-00789 CCRCC WXS tumor CPT0016030017 b0685694-85b6-45dc-bb9b-c08706fe4ea6_gdc_realn.bam 41450274277 BAM harmonized CPTAC3 af1efd5b-f80e-4846-ab9f-49ba2fd90423 15cf98db8d31a7638c6f09451d099407 {"aliquot_tag": "ALQ_7762b45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.MethArray.Green.T C3L-00790 CCRCC Methylation_Array tumor CPT0065690009 202184900104_R06C01_Grn.idat 13676259 IDAT Green NA CPTAC3 ad87cbfa-d771-49b0-bc18-deebf7ebfb4a 3179636a681317a6cfb1c17174814704 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.MethArray.Red.T C3L-00790 CCRCC Methylation_Array tumor CPT0065690009 202184900104_R06C01_Red.idat 13676259 IDAT Red NA CPTAC3 9a3b4ca1-d4f9-491b-bc7e-9a702f3fd4d8 068464270f5ccc591ccdb5d900328e1e {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.miRNA-Seq.S7_L001_R1.T C3L-00790 CCRCC miRNA-Seq tumor CPT0065690006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L001_R1_001.unaln.bam 246331250 BAM S7_L001_R1 submitted_unaligned CPTAC3 df596c29-932f-4da5-885a-1e5c29ff1373 3f3eb22a34d25c043286e3e5c3eeb8df {"aliquot_tag": "ALQ_beba5db4", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.miRNA-Seq.T.hg38 C3L-00790 CCRCC miRNA-Seq tumor CPT0065690006 fd1efbfd-2a8f-44c5-bcc9-f18374d178ef_mirnaseq_gdc_realn.bam 272473846 BAM harmonized CPTAC3 a1d075d8-11df-47bd-bb9a-1a2fd16d4e3e f55ddc578d5accf9dbea3074deffa175 {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.RNA-Seq.chimeric.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.chimeric.gdc_realn.bam 35063478 BAM chimeric harmonized CPTAC3 cde4ca04-8951-4837-90fc-0d795dd25a2e 95a6f63b218df2e1c8abf8a4c7a462d5 {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.RNA-Seq.genomic.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.genomic.gdc_realn.bam 8104226435 BAM genomic harmonized CPTAC3 ab59bdd1-aa9c-4950-a966-7818068a6ad1 b8772cb405a5c650686332227aabec40 {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.RNA-Seq.S7_L002_R1.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3979549623 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 972efe5e-789a-4322-abc9-54d270c2529d 312664197ad286db9cc29e042e61a6e1 {"aliquot_tag": "ALQ_beba5db4", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.RNA-Seq.S7_L002_R2.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4230683498 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 5fe9ea2b-9e26-4437-8b2c-594d7c523abe 671d625060a8c06a362539b7a66438bf {"aliquot_tag": "ALQ_beba5db4", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.RNA-Seq.transcriptome.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.transcriptome.gdc_realn.bam 9729050387 BAM transcriptome harmonized CPTAC3 f760d5ae-2f9c-480e-b439-797461a974da f75313e188faa4f3ec2467e235fa6cea {"aliquot_tag": "ALQ_beba5db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.WGS.N C3L-00790 CCRCC WGS blood_normal CPT0067650002 CPT0067650002.WholeGenome.RP-1303.bam 78244877560 BAM submitted_aligned CPTAC3 71ea60b9-caff-4226-a26b-0e287c2c8a50 1eed2a9378eb7a8d18dfab8d84eaa27e {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00790.WGS.N.hg38 C3L-00790 CCRCC WGS blood_normal CPT0067650002 cbeac8df-cedf-4e5a-9bbc-c16131c07ff6_gdc_realn.bam 123197442724 BAM harmonized CPTAC3 b29fae35-80ac-4cfb-8f2f-28396e2b3665 865bcd43601cb13276a4aced9e6caf0a {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00790.WGS.T C3L-00790 CCRCC WGS tumor CPT0065690009 CPT0065690009.WholeGenome.RP-1303.bam 67760143626 BAM submitted_aligned CPTAC3 0aae4948-9dd3-4a19-80ae-49b89cd3c5db 3be3c9aa7c5ce3619e2ad7dbc03f1ff2 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.WGS.T.hg38 C3L-00790 CCRCC WGS tumor CPT0065690009 5c91dbd2-6b5f-4899-aca2-48b765a4913c_gdc_realn.bam 102514963865 BAM harmonized CPTAC3 6d1af02f-7afc-4111-ab65-5014b33de8cd 03100e0975f0fac4356eef3a428b5739 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.WXS.N C3L-00790 CCRCC WXS blood_normal CPT0067650002 CPT0067650002.WholeExome.RP-1303.bam 35497354835 BAM submitted_aligned CPTAC3 229d7c2b-e850-4a3a-843e-745d87a9814c b12f59a67b49898c6a1fda5ccd462f99 {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00790.WXS.N.hg38 C3L-00790 CCRCC WXS blood_normal CPT0067650002 cbeac8df-cedf-4e5a-9bbc-c16131c07ff6_gdc_realn.bam 48513889388 BAM harmonized CPTAC3 43a08971-e8ec-46e4-9650-3a7f38fe3f5c c28ada034f930e94cb3825c70603c000 {"aliquot_tag": "ALQ_ebb86585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00790.WXS.T C3L-00790 CCRCC WXS tumor CPT0065690009 CPT0065690009.WholeExome.RP-1303.bam 37857914309 BAM submitted_aligned CPTAC3 cff5ae5e-91db-4b16-acc8-efa0bb4a942e 775207a873f6567e4ac0c61dbc3472c9 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00790.WXS.T.hg38 C3L-00790 CCRCC WXS tumor CPT0065690009 5c91dbd2-6b5f-4899-aca2-48b765a4913c_gdc_realn.bam 52440372058 BAM harmonized CPTAC3 71f9aa43-cc7e-416d-96a2-f0477bb1ae40 72d9366046a60c9460b042c773117ff7 {"aliquot_tag": "ALQ_2e054025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.MethArray.Green.T C3L-00791 CCRCC Methylation_Array tumor CPT0026410009 202176290145_R02C01_Grn.idat 13676224 IDAT Green NA CPTAC3 fe1cfca4-3274-4804-a49c-c86aca2ae120 9b10f8853a8b080f2dc529202ceb5aba {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.MethArray.Red.T C3L-00791 CCRCC Methylation_Array tumor CPT0026410009 202176290145_R02C01_Red.idat 13676224 IDAT Red NA CPTAC3 13af420c-5d07-44cc-a06f-bc7e6406e9ab 151f73a82878b9e991944dacc240afe7 {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.miRNA-Seq.S10_L001_R1.T C3L-00791 CCRCC miRNA-Seq tumor CPT0026410006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTTTCG_S10_L001_R1_001.unaln.bam 228587952 BAM S10_L001_R1 submitted_unaligned CPTAC3 b3285815-ef1b-41da-b812-8a377a84af64 6524d1700565fbcd33ff8724a5ea5836 {"aliquot_tag": "ALQ_76a0a319", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.miRNA-Seq.T.hg38 C3L-00791 CCRCC miRNA-Seq tumor CPT0026410006 d27767bf-3f96-4dfb-a538-e7b72eb5aaa8_mirnaseq_gdc_realn.bam 253208220 BAM harmonized CPTAC3 3f28babb-e7ae-4508-ac9d-3bdc373db1e7 e8965c924f368d703a67d2f0e0387c54 {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.RNA-Seq.chimeric.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.chimeric.gdc_realn.bam 77148667 BAM chimeric harmonized CPTAC3 f1e4d839-c438-4246-a512-dc26769f4d55 4e0cbc81e812e2fbffb6066aaecda4ea {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.RNA-Seq.genomic.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.genomic.gdc_realn.bam 8935972151 BAM genomic harmonized CPTAC3 07edb122-6acd-4436-a6aa-eb3a587538f6 f52edd36a4001431d78b7b4f30cbca54 {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.RNA-Seq.S9_L003_R1.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 4300418853 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 6ddce4ca-3b32-4573-b613-e588b9b34b87 fa39c02805b59066fb2e13c89b3d65c0 {"aliquot_tag": "ALQ_76a0a319", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.RNA-Seq.S9_L003_R2.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4714136255 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 846dd412-1ec5-420d-8961-dcdc94f110ba 9f626d4e474d5bf403a93be091751db3 {"aliquot_tag": "ALQ_76a0a319", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.RNA-Seq.transcriptome.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.transcriptome.gdc_realn.bam 12896173617 BAM transcriptome harmonized CPTAC3 72f81126-be40-491d-9896-cfb45ea4b16d c854cf906e0faa2c67572d856059646a {"aliquot_tag": "ALQ_76a0a319", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.WGS.N C3L-00791 CCRCC WGS blood_normal CPT0029500002 CPT0029500002.WholeGenome.RP-1303.bam 70104973680 BAM submitted_aligned CPTAC3 7af0d581-f94f-4b0e-b1bf-78d0eff14506 8c588a46837bd6eef9f6ab8382dba3f1 {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00791.WGS.N.hg38 C3L-00791 CCRCC WGS blood_normal CPT0029500002 03f0c034-cfab-4864-bfcf-fcdeabec1493_gdc_realn.bam 101621896998 BAM harmonized CPTAC3 4b23c136-5d2a-4cd0-8df6-a89b4f0fd28d 5187ecbde68c37031028b23b75c21c35 {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00791.WGS.T C3L-00791 CCRCC WGS tumor CPT0026410009 CPT0026410009.WholeGenome.RP-1303.bam 72831008675 BAM submitted_aligned CPTAC3 ebf9b25a-f1d0-4be1-830d-004432793355 9b88a3329fd23ba6273079a2d87f651b {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.WGS.T.hg38 C3L-00791 CCRCC WGS tumor CPT0026410009 91a5b1e6-a1b8-4402-b8ce-842c721fdbcc_gdc_realn.bam 106586916548 BAM harmonized CPTAC3 f8df22ae-47eb-44f1-9cd5-d454bb132100 ccb1581fb771bbd037d60ecea63f5c6d {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.WXS.N C3L-00791 CCRCC WXS blood_normal CPT0029500002 CPT0029500002.WholeExome.RP-1303.bam 29710393770 BAM submitted_aligned CPTAC3 acdb5f29-a1ce-48a6-8a91-5f790691bfa4 0d7b110c20e8d65854383a843b6a27a2 {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00791.WXS.N.hg38 C3L-00791 CCRCC WXS blood_normal CPT0029500002 03f0c034-cfab-4864-bfcf-fcdeabec1493_gdc_realn.bam 40523806713 BAM harmonized CPTAC3 f6b5a86d-d09d-48a5-8605-0bebc1aff8d3 5cbce6d058777219d4a7e8fe1f82925d {"aliquot_tag": "ALQ_71b9edfc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00791.WXS.T C3L-00791 CCRCC WXS tumor CPT0026410009 CPT0026410009.WholeExome.RP-1303.bam 26900995481 BAM submitted_aligned CPTAC3 b081727c-55e9-4c3b-8de2-9daa0637634b 2da6505e742ffe582f8bb5fb8b511f3d {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00791.WXS.T.hg38 C3L-00791 CCRCC WXS tumor CPT0026410009 91a5b1e6-a1b8-4402-b8ce-842c721fdbcc_gdc_realn.bam 36855681931 BAM harmonized CPTAC3 e344d21b-8d68-4f4a-b990-3fa7a28da155 6f11cc2a936e6a7b5c54762dff18189e {"aliquot_tag": "ALQ_e61fbe88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.MethArray.Green.T C3L-00792 CCRCC Methylation_Array tumor CPT0015730006 202184900111_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a2dbf534-3b7f-48eb-b142-910ea11a0984 5aabade64489d61dfb349aaf241ab0c6 {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.MethArray.Red.T C3L-00792 CCRCC Methylation_Array tumor CPT0015730006 202184900111_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 0f860e8c-d7ef-4a3e-a0ac-081dad06af2f 8b8ce2b87ab77b62f462bfdbc2098e6c {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.miRNA-Seq.S33_L002_R1.T C3L-00792 CCRCC miRNA-Seq tumor CPT0015730009 180924_UNC31-K00269_0154_AHWTMLBBXX_CTATAC_S33_L002_R1_001.unaln.bam 286415302 BAM S33_L002_R1 submitted_unaligned CPTAC3 534db37f-36d2-473f-9e3b-a8a24f80ed3c 7d82320f857dcde49db7fdea492b785b {"aliquot_tag": "ALQ_a52c8238", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.miRNA-Seq.T.hg38 C3L-00792 CCRCC miRNA-Seq tumor CPT0015730009 91926337-d909-4f0a-8631-204cb3371bb7_mirnaseq_gdc_realn.bam 313583836 BAM harmonized CPTAC3 93be8f91-ad86-492c-8e2f-b1d64e950062 00defc2e05377f1f830f63122b07d440 {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.RNA-Seq.chimeric.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.chimeric.gdc_realn.bam 91996674 BAM chimeric harmonized CPTAC3 6850ecc8-6a66-4df8-8d92-4b371644a019 32b32470065c9c8abd2be32339ac9edd {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.RNA-Seq.genomic.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.genomic.gdc_realn.bam 9587669259 BAM genomic harmonized CPTAC3 701595ac-dbbb-4bc9-a824-d7db1e11b6f5 04650b1f3ab6f5e0f795842c3b476d0b {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.RNA-Seq.S8_L002_R1.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R1_001.fastq.gz 4724301911 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 418b4a44-7b5c-4d1a-b591-58e9bc0b2057 45529a36ef1468a1be8192f61ef0da54 {"aliquot_tag": "ALQ_a52c8238", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.RNA-Seq.S8_L002_R2.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R2_001.fastq.gz 5148534146 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 d48b1dd6-ab67-46ea-b1c7-0620df168c0c 543955e15dfe9624f89d06c40f365988 {"aliquot_tag": "ALQ_a52c8238", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.RNA-Seq.transcriptome.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.transcriptome.gdc_realn.bam 12933075148 BAM transcriptome harmonized CPTAC3 0f544acc-e1e3-43d4-b3d5-740b77df3237 e909bf5c99e578a22b306442e57c876e {"aliquot_tag": "ALQ_a52c8238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.WGS.N C3L-00792 CCRCC WGS blood_normal CPT0018270002 CPT0018270002.WholeGenome.RP-1303.bam 69328786507 BAM submitted_aligned CPTAC3 804253ff-772b-4bff-827f-6e3e71c65778 b9d17ae042e3b0c716c2401517dd6ae2 {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00792.WGS.N.hg38 C3L-00792 CCRCC WGS blood_normal CPT0018270002 401e7be3-c452-497d-8b39-8e935cbd9717_gdc_realn.bam 102365948134 BAM harmonized CPTAC3 04c2befc-0ce9-49f9-8502-375f912c7e42 b79c47dd7e0d993281c597d9fbb28e28 {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00792.WGS.T C3L-00792 CCRCC WGS tumor CPT0015730006 CPT0015730006.WholeGenome.RP-1303.bam 59467085845 BAM submitted_aligned CPTAC3 164e099a-35b5-43bb-a408-351c08634e66 1f8569556fcbb03e31b2b0476210f473 {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.WGS.T.hg38 C3L-00792 CCRCC WGS tumor CPT0015730006 8b094979-2a4a-4add-93f2-51bb3752ee1d_gdc_realn.bam 84813853196 BAM harmonized CPTAC3 17dc6e04-a833-465a-ad35-16c8d4a4b232 26b33aa4e5ae4330befcb8ee7aea857e {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.WXS.N C3L-00792 CCRCC WXS blood_normal CPT0018270002 CPT0018270002.WholeExome.RP-1303.bam 32473993083 BAM submitted_aligned CPTAC3 700c9f3e-f18f-4600-bfad-3eb7a66f03a7 0fe1368cb165229c7982c43b0d69ded2 {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00792.WXS.N.hg38 C3L-00792 CCRCC WXS blood_normal CPT0018270002 401e7be3-c452-497d-8b39-8e935cbd9717_gdc_realn.bam 44240617871 BAM harmonized CPTAC3 c3ee4122-c0a6-45db-ae00-190c0a982ec5 668c527e6d489e0cb7a1a2f65f22fe6a {"aliquot_tag": "ALQ_f6640d03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00792.WXS.T C3L-00792 CCRCC WXS tumor CPT0015730006 CPT0015730006.WholeExome.RP-1303.bam 20772832372 BAM submitted_aligned CPTAC3 b9af592c-9659-4292-8f4c-4a6f2fed8ac3 2e8bb4daff1283a87d58cbef3a0e39ab {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00792.WXS.T.hg38 C3L-00792 CCRCC WXS tumor CPT0015730006 8b094979-2a4a-4add-93f2-51bb3752ee1d_gdc_realn.bam 28067539296 BAM harmonized CPTAC3 902d5260-8d92-4c33-8258-3fb9ccf54d6e 506b811f1088c6b9abff2e3cac595b86 {"aliquot_tag": "ALQ_35939fa9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00795.MethArray.Green.T C3L-00795 CCRCC Methylation_Array tumor CPT0390400006 205589740003_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 506ca660-c198-4360-aa15-420355fa61e9 48106e96e6ebb24e2554909c9a13324e {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.MethArray.Red.T C3L-00795 CCRCC Methylation_Array tumor CPT0390400006 205589740003_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 ceba3f63-9317-4d7d-af9a-4c255c7e28b5 3f0bd1c4773b6f683e791574f6d51327 {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.miRNA-Seq.A.hg38 C3L-00795 CCRCC miRNA-Seq tissue_normal CPT0390410005 2314f6b4-b677-4aec-b0fb-1db76a89ffed_mirnaseq_gdc_realn.bam 238913478 BAM harmonized CPTAC3 f0e70095-58b1-4a77-b047-8b14bfccf657 f037eb64118ba083f96442a930ae1edb {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00795.miRNA-Seq.S29_L002_R1.A C3L-00795 CCRCC miRNA-Seq tissue_normal CPT0390410005 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTATAC_S29_L002_R1_001.unaln.bam 221661557 BAM S29_L002_R1 submitted_unaligned CPTAC3 c4ac5314-b5c2-4107-8aea-40600b7ff419 445c9000a8b38f06bac9635a7e5e4a64 {"aliquot_tag": "ALQ_e89ee70a", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00795.miRNA-Seq.S34_L002_R1.T C3L-00795 CCRCC miRNA-Seq tumor CPT0390400009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TATAAT_S34_L002_R1_001.unaln.bam 291501428 BAM S34_L002_R1 submitted_unaligned CPTAC3 e13aa51d-bb66-433f-b04c-0906333bc1a7 6accaaa449154a2247c681d08a001663 {"aliquot_tag": "ALQ_dc488291", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.miRNA-Seq.T.hg38 C3L-00795 CCRCC miRNA-Seq tumor CPT0390400009 62c7350c-4c81-4740-8a8f-1f87aa165372_mirnaseq_gdc_realn.bam 307543489 BAM harmonized CPTAC3 a02620b4-4aa9-400e-8bcf-e92291c583a8 23bb0f0fe9215dea6042ed5cc8572df4 {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.RNA-Seq.chimeric.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.chimeric.gdc_realn.bam 304646200 BAM chimeric harmonized CPTAC3 4e23a54e-3838-4d5b-be3a-44498a37d071 ef340fbe194457c9da4218c57f9d9fd5 {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00795.RNA-Seq.chimeric.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.chimeric.gdc_realn.bam 462636042 BAM chimeric harmonized CPTAC3 769b59df-52f5-42d5-a967-dcdbb0800063 9c6e8e0e25da2a0f7f943a8dbf9debab {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.RNA-Seq.genomic.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.genomic.gdc_realn.bam 8283598547 BAM genomic harmonized CPTAC3 bf57d7e1-34cf-4d60-86ec-fa021329db57 5e8e7f96e4a7cf6e94d2904fe670abbc {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00795.RNA-Seq.genomic.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.genomic.gdc_realn.bam 7995674794 BAM genomic harmonized CPTAC3 d8338ba0-e107-45ef-b449-14ea19c0cc1b 900eeb532de21a46c36bdc7ac15ff05c {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.RNA-Seq.S25_L007_R1.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R1_001.fastq.gz 3803721233 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 d8c01c7d-aae7-4d23-a437-15b0457b2291 1a4ec24c816e4656037343e989082e0e {"aliquot_tag": "ALQ_dc488291", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.RNA-Seq.S25_L007_R2.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R2_001.fastq.gz 4333563120 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 22e60829-f5a8-4b30-963e-dd6b19069950 8f5d0783d62899c2c5de2471ab4af6f6 {"aliquot_tag": "ALQ_dc488291", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.RNA-Seq.S28_L008_R1.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R1_001.fastq.gz 3749868315 FASTQ S28_L008_R1 submitted_unaligned CPTAC3 60da8d69-0096-4500-8d40-963b42393608 29cd37cd5a7a97b21a22d8750133d661 {"aliquot_tag": "ALQ_e89ee70a", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00795.RNA-Seq.S28_L008_R2.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R2_001.fastq.gz 4344051452 FASTQ S28_L008_R2 submitted_unaligned CPTAC3 0acef3b0-f83f-4558-ae54-1f6658fed925 1fbc5b5d00af59bd97928fa7d8cb6a92 {"aliquot_tag": "ALQ_e89ee70a", "sample": "S28", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00795.RNA-Seq.transcriptome.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.transcriptome.gdc_realn.bam 9771607477 BAM transcriptome harmonized CPTAC3 9eda9824-88b1-4959-8e60-18faa81214ad 5eefd7dc27e7b3f7d5c61f4c96f4eb7e {"aliquot_tag": "ALQ_e89ee70a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00795.RNA-Seq.transcriptome.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.transcriptome.gdc_realn.bam 8668082954 BAM transcriptome harmonized CPTAC3 1eb2ddbd-92cc-445e-a43a-aa0b9de63219 3908c3ac7aab4f6284baf47388e247fe {"aliquot_tag": "ALQ_dc488291", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.WGS.N C3L-00795 CCRCC WGS blood_normal CPT0390460002 CPT0390460002.WholeGenome.RP-2158.bam 21458217924 BAM submitted_aligned CPTAC3 ecab0bd2-3f38-4371-a9af-493c780372de 6bbd3b9a319b3726a3b610f78f1f3878 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00795.WGS.N.hg38 C3L-00795 CCRCC WGS blood_normal CPT0390460002 9446dc9c-5b27-485b-9a28-8d42137fb140_wgs_gdc_realn.bam 64722217360 BAM harmonized CPTAC3 4562b7fe-e382-4a9b-8bb4-628d45bfadbf 2049f2ec76a808e2be8cd826de2c6e45 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00795.WGS.T C3L-00795 CCRCC WGS tumor CPT0390400006 CPT0390400006.WholeGenome.RP-2158.bam 23686428322 BAM submitted_aligned CPTAC3 d9386648-669f-4d93-a317-6e0a59a55e7b 7e8edc0d8a4d74f95b3c94790ed403ff {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.WGS.T.hg38 C3L-00795 CCRCC WGS tumor CPT0390400006 57ee5463-b1e2-443b-ab6c-9f709719b72f_wgs_gdc_realn.bam 73073736353 BAM harmonized CPTAC3 6c844a04-ef09-4910-81cc-a8734b084606 70f48c0a4c10f6a3d3109f34db2440fa {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.WXS.N C3L-00795 CCRCC WXS blood_normal CPT0390460002 CPT0390460002.WholeExome.RP-1303.bam 24282585847 BAM submitted_aligned CPTAC3 e11f3ff3-ad7f-4c27-abb1-eed950172a55 166f9a9e05fdf08278da64f997fdc887 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00795.WXS.N.hg38 C3L-00795 CCRCC WXS blood_normal CPT0390460002 9446dc9c-5b27-485b-9a28-8d42137fb140_wxs_gdc_realn.bam 33578428857 BAM harmonized CPTAC3 d3996481-36ad-4d20-a7d1-27dfe659cd47 e2999bdc2c602409b7fdbc7288c11136 {"aliquot_tag": "ALQ_c4daaeb9", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-00795.WXS.T C3L-00795 CCRCC WXS tumor CPT0390400006 CPT0390400006.WholeExome.RP-1303.bam 25719729084 BAM submitted_aligned CPTAC3 6a000c4c-13c1-44c7-b234-932ba520ae28 0576d7a65f2055b426ea8bd31b2437a9 {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00795.WXS.T.hg38 C3L-00795 CCRCC WXS tumor CPT0390400006 57ee5463-b1e2-443b-ab6c-9f709719b72f_wxs_gdc_realn.bam 35515622713 BAM harmonized CPTAC3 749e5303-c654-4a1b-ae97-63c72e94875b 72f083430c1ad9c8b5662d26f008c598 {"aliquot_tag": "ALQ_4cf79f00", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-00796.MethArray.Green.T C3L-00796 CCRCC Methylation_Array tumor CPT0065750009 202184900149_R04C01_Grn.idat 13676256 IDAT Green NA CPTAC3 350d1fb3-357f-4e96-953b-2a6adff0c741 8f5088c3cad078121b46272c101fc499 {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.MethArray.Red.T C3L-00796 CCRCC Methylation_Array tumor CPT0065750009 202184900149_R04C01_Red.idat 13676256 IDAT Red NA CPTAC3 e700b1c8-927b-44af-a90b-87e5b8451b42 73068316e545af9c5012ef8c306e496b {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.miRNA-Seq.S18_L001_R1.T C3L-00796 CCRCC miRNA-Seq tumor CPT0065750006 181113_UNC31-K00269_0164_AH23NNBBXY_TAATCG_S18_L001_R1_001.unaln.bam 196623341 BAM S18_L001_R1 submitted_unaligned CPTAC3 6cb98829-1a47-40c2-ab0f-2fb74922cb59 3c91ee25e1322b56e8eae76503550f7f {"aliquot_tag": "ALQ_b0166310", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.miRNA-Seq.T.hg38 C3L-00796 CCRCC miRNA-Seq tumor CPT0065750006 7d00c1eb-9dc9-430a-93e6-dcef4d869fca_mirnaseq_gdc_realn.bam 219148533 BAM harmonized CPTAC3 fbd0dfb8-40b8-4587-aeed-642c8eb0ab1b c209f4f55220fa21c1490e2d5189acad {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.RNA-Seq.chimeric.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.chimeric.gdc_realn.bam 25085483 BAM chimeric harmonized CPTAC3 00ca68d2-a1cb-489d-9e18-aa55763f0306 6762b77ea81f50ed815594f5d22ba116 {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.RNA-Seq.genomic.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.genomic.gdc_realn.bam 7213439475 BAM genomic harmonized CPTAC3 42f8ee7e-aff7-4e7a-a9cf-fa04d6926c42 7305c84b717f5168875ccd4e76ac75c1 {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.RNA-Seq.S3_L001_R1.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 3647739042 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 b85c5a99-7f85-4c3b-bb05-186d0a4b4dbc dce9a92f7368c36a9ac9bf382e5444b2 {"aliquot_tag": "ALQ_b0166310", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.RNA-Seq.S3_L001_R2.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 3877592392 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 f624070c-7dde-4481-afb4-c2b17f00d0db 6b73fbad230321c283c932346a9e128b {"aliquot_tag": "ALQ_b0166310", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.RNA-Seq.transcriptome.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.transcriptome.gdc_realn.bam 9704683776 BAM transcriptome harmonized CPTAC3 fea91530-3577-4a70-998a-8da1cafc97f0 cd97fcc8ef5bca645ef1975b137aee4f {"aliquot_tag": "ALQ_b0166310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.WGS.N C3L-00796 CCRCC WGS blood_normal CPT0067670002 CPT0067670002.WholeGenome.RP-1303.bam 76610002151 BAM submitted_aligned CPTAC3 e88b9810-f079-404e-b530-39e3180769bc bef134487350d135fd5ba0617e872d8e {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00796.WGS.N.hg38 C3L-00796 CCRCC WGS blood_normal CPT0067670002 84092027-a164-403e-9910-428f99097697_gdc_realn.bam 116014166470 BAM harmonized CPTAC3 09da6812-c956-4b0a-8197-22750ad5fe22 beb9292b8d6e66d462fa160af817d1ba {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00796.WGS.T C3L-00796 CCRCC WGS tumor CPT0065750009 CPT0065750009.WholeGenome.RP-1303.bam 65204025377 BAM submitted_aligned CPTAC3 ef249278-d922-45d4-ae27-5147cf4fb7d4 883d353ffc4a8685f2912314497db6ee {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.WGS.T.hg38 C3L-00796 CCRCC WGS tumor CPT0065750009 b4d752c8-7996-433f-8e5b-4b9d748eefa5_gdc_realn.bam 97312376207 BAM harmonized CPTAC3 7a1b9d0e-3801-4de2-b9a9-c33bfc996948 9a7c3bcff39f078b516137d4960d2dfd {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.WXS.N C3L-00796 CCRCC WXS blood_normal CPT0067670002 CPT0067670002.WholeExome.RP-1303.bam 33188081381 BAM submitted_aligned CPTAC3 1c7b2184-d1e0-4f43-ad8d-805fe9311986 11bf552a78f0570cc528c759e6641b94 {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00796.WXS.N.hg38 C3L-00796 CCRCC WXS blood_normal CPT0067670002 84092027-a164-403e-9910-428f99097697_gdc_realn.bam 46190370414 BAM harmonized CPTAC3 f671cd0d-6c12-48ee-80fd-44bf196617fa 2856118b05f2c17f569f7cd22393fc5f {"aliquot_tag": "ALQ_917836e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00796.WXS.T C3L-00796 CCRCC WXS tumor CPT0065750009 CPT0065750009.WholeExome.RP-1303.bam 23714519779 BAM submitted_aligned CPTAC3 782754e0-2609-4f23-bd92-2337a483358b 55826c471914aaabecf0bc9dbccc8c31 {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00796.WXS.T.hg38 C3L-00796 CCRCC WXS tumor CPT0065750009 b4d752c8-7996-433f-8e5b-4b9d748eefa5_gdc_realn.bam 32725995134 BAM harmonized CPTAC3 1be1b056-c206-40a4-a86a-c4e9f0603acb 008d87722a68720251017759ea8a78b7 {"aliquot_tag": "ALQ_20a97e81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.MethArray.Green.T C3L-00799 CCRCC Methylation_Array tumor CPT0025230009 202163550115_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a6b1aa3c-a6a8-4af1-ae0c-a777debeb0c2 a2e1267cdad5541187a3cb4a902b592b {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.MethArray.Red.T C3L-00799 CCRCC Methylation_Array tumor CPT0025230009 202163550115_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 6a75eaa6-6e76-4a96-9cd2-69a47cf3b2ee 0789b4b826d4ddd7b5ae254cb4f0dbc3 {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.miRNA-Seq.S19_L001_R1.T C3L-00799 CCRCC miRNA-Seq tumor CPT0025230006 180924_UNC31-K00269_0154_AHWTMLBBXX_GATCAG_S19_L001_R1_001.unaln.bam 232714153 BAM S19_L001_R1 submitted_unaligned CPTAC3 4cd3f600-db95-44ee-aeaa-23fe5be8bd90 705f5fd507ba2f77778bcaf44b7d44fb {"aliquot_tag": "ALQ_ebd109f9", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.miRNA-Seq.T.hg38 C3L-00799 CCRCC miRNA-Seq tumor CPT0025230006 b97d1a52-3605-4daa-a7fa-247b05699086_mirnaseq_gdc_realn.bam 253452078 BAM harmonized CPTAC3 e36313e1-ff0d-4ddf-88ba-8fd349ed4725 17055b29f459ca39f4bb12e6038e9efc {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.RNA-Seq.chimeric.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.chimeric.gdc_realn.bam 89190442 BAM chimeric harmonized CPTAC3 48a067c5-7bd3-4012-8af6-539d8a27473d 73bedfe701d440c651d6eba6b438b724 {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.RNA-Seq.genomic.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.genomic.gdc_realn.bam 8898103423 BAM genomic harmonized CPTAC3 930ff244-9aaf-4df1-82b7-c4efa9da77da b9e34d8294317221654a8767e036820f {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.RNA-Seq.S16_L007_R1.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R1_001.fastq.gz 4340817274 FASTQ S16_L007_R1 submitted_unaligned CPTAC3 6909bf98-cfab-4785-94df-39493636749c 935ac003bc9de2ee577a554f451f0117 {"aliquot_tag": "ALQ_ebd109f9", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.RNA-Seq.S16_L007_R2.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R2_001.fastq.gz 4586496523 FASTQ S16_L007_R2 submitted_unaligned CPTAC3 8640020d-5e63-47cb-a682-379ef0c43911 073bd722ba008c5e943654b3d72ce097 {"aliquot_tag": "ALQ_ebd109f9", "sample": "S16", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.RNA-Seq.transcriptome.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.transcriptome.gdc_realn.bam 11869499232 BAM transcriptome harmonized CPTAC3 b7f6be2b-ac37-4121-8672-5f6201770835 2aa685a70a4b91146170f95af28535c5 {"aliquot_tag": "ALQ_ebd109f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.WGS.N C3L-00799 CCRCC WGS blood_normal CPT0029440002 CPT0029440002.WholeGenome.RP-1303.bam 65751060077 BAM submitted_aligned CPTAC3 da8ed29c-ecaa-41e1-acd8-2311fb4fdf07 2b49ae3a02bd092df735c51cfa0e8218 {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00799.WGS.N.hg38 C3L-00799 CCRCC WGS blood_normal CPT0029440002 d621aff7-2313-4cf3-b903-47e3694c13e5_gdc_realn.bam 95506295695 BAM harmonized CPTAC3 159b4afe-b1e0-4e35-8645-02057350c16c db758732436214f6a8ddeb52dad9be4b {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00799.WGS.T C3L-00799 CCRCC WGS tumor CPT0025230009 CPT0025230009.WholeGenome.RP-1303.bam 61332219647 BAM submitted_aligned CPTAC3 a4454836-e5db-48d7-8da2-6c75e34ece79 c8e1fe93f64da050d265231eb4cdc9ba {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.WGS.T.hg38 C3L-00799 CCRCC WGS tumor CPT0025230009 fcd2143a-2187-492c-95fc-c6d971f11153_gdc_realn.bam 89139045955 BAM harmonized CPTAC3 80c01f95-c3a9-42fa-911b-308c7e2406b5 21b0630a48b1009fc7a67c8b94483f21 {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.WXS.N C3L-00799 CCRCC WXS blood_normal CPT0029440002 CPT0029440002.WholeExome.RP-1303.bam 47460992977 BAM submitted_aligned CPTAC3 b526cd1f-8bd3-4747-99fa-51ddb16f800e d82872156b761bffa0d884f31b7c032d {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00799.WXS.N.hg38 C3L-00799 CCRCC WXS blood_normal CPT0029440002 d621aff7-2313-4cf3-b903-47e3694c13e5_gdc_realn.bam 63433737246 BAM harmonized CPTAC3 35d4a4d5-b1d1-40f8-80ec-95b563912a40 2efdb237f1e00923769beddc89693f84 {"aliquot_tag": "ALQ_4f659899", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00799.WXS.T C3L-00799 CCRCC WXS tumor CPT0025230009 CPT0025230009.WholeExome.RP-1303.bam 21813981067 BAM submitted_aligned CPTAC3 d210ad88-363b-47cc-9032-0f9a8d9b21d3 7d87d673cd4beaa231b459831b32ac6b {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00799.WXS.T.hg38 C3L-00799 CCRCC WXS tumor CPT0025230009 fcd2143a-2187-492c-95fc-c6d971f11153_gdc_realn.bam 29717919086 BAM harmonized CPTAC3 6f4bb964-9069-47a2-9330-0329623d85e8 6224db207d5c0ce15ebb1fcd289540c3 {"aliquot_tag": "ALQ_7b6e1468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.MethArray.Green.T C3L-00800 CCRCC Methylation_Array tumor CPT0025290009 202184990059_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b5a546a7-f70f-4923-909a-34c2399d73c2 03c49e87fbf05dab176e8a81e526d8fc {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.MethArray.Red.T C3L-00800 CCRCC Methylation_Array tumor CPT0025290009 202184990059_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 8e1ac8f6-787a-4db2-9597-3d4176836f12 10c933e95405f3a1098fdf0c1afbe5ba {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.miRNA-Seq.S4_L003_R1.T C3L-00800 CCRCC miRNA-Seq tumor CPT0025290006 181113_UNC31-K00269_0164_AH23NNBBXY_CAAAAG_S4_L003_R1_001.unaln.bam 228444479 BAM S4_L003_R1 submitted_unaligned CPTAC3 6ac9f63f-8162-49e1-9961-2415fd56f30d 3661ba9799a9ae9f1dbb46570eaff4be {"aliquot_tag": "ALQ_a1611158", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.miRNA-Seq.T.hg38 C3L-00800 CCRCC miRNA-Seq tumor CPT0025290006 244f0e46-7475-4cfb-a38c-002a96971108_mirnaseq_gdc_realn.bam 251011501 BAM harmonized CPTAC3 ba96ac4c-6cea-4f45-8665-1ef148c97da3 57e7e6d0e280f440719ef62c11dc505b {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.RNA-Seq.chimeric.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.chimeric.gdc_realn.bam 99963060 BAM chimeric harmonized CPTAC3 8ceeeba1-a02b-442d-b32c-b068d64a860b ea63bb20c9bb8071437e26bd87fdf332 {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.RNA-Seq.genomic.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.genomic.gdc_realn.bam 9738450300 BAM genomic harmonized CPTAC3 5c41ce48-f87a-44b0-86ef-a7c6663f0ec6 44db48e22a80ce968ebfab920973a29c {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.RNA-Seq.S4_L001_R1.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4662823186 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 85a4efc7-01aa-438e-b67c-9a1329b3ee90 6a04593f5aaa43bdc823c83e3941ddf0 {"aliquot_tag": "ALQ_a1611158", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.RNA-Seq.S4_L001_R2.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R2_001.fastq.gz 5118016100 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 571b76da-154b-46a3-9d5e-e65eec367ce8 2a2cde4da616bdd92a98643001236c22 {"aliquot_tag": "ALQ_a1611158", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.RNA-Seq.transcriptome.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.transcriptome.gdc_realn.bam 12379856707 BAM transcriptome harmonized CPTAC3 e454d907-96a1-4127-98b8-65f35dad9468 e2b9272c5d89ac2dadc0c0dbccc921e7 {"aliquot_tag": "ALQ_a1611158", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.WGS.N C3L-00800 CCRCC WGS blood_normal CPT0029460002 CPT0029460002.WholeGenome.RP-1303.bam 60806556141 BAM submitted_aligned CPTAC3 f4e34d62-76d7-445b-a97c-52ae65438301 c31fa45c1316afd538f8e87b64e312d2 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00800.WGS.N.hg38 C3L-00800 CCRCC WGS blood_normal CPT0029460002 315ae7de-a352-42c6-84df-468470b72af9_gdc_realn.bam 89799621222 BAM harmonized CPTAC3 0beccacb-bc6e-4118-af83-5c807c3aae8f b787319093521f3b32248c3d1dcc1272 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00800.WGS.T C3L-00800 CCRCC WGS tumor CPT0025290009 CPT0025290009.WholeGenome.RP-1303.bam 58573135912 BAM submitted_aligned CPTAC3 2a635586-9f40-49c4-875a-fe76a5c53e2e 0ba267732aa0d07d2cd3fc5c3e7a4a0a {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.WGS.T.hg38 C3L-00800 CCRCC WGS tumor CPT0025290009 fb0a5b93-cf6f-4913-a95f-3f650242406e_gdc_realn.bam 86315808411 BAM harmonized CPTAC3 04349d60-1055-4080-8835-8635d3734b15 700d91814b1f92199468113558b8fe88 {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.WXS.N C3L-00800 CCRCC WXS blood_normal CPT0029460002 CPT0029460002.WholeExome.RP-1303.bam 23006578443 BAM submitted_aligned CPTAC3 7b65b620-7dbc-4721-ad63-8d2d3c201e8d ae14f2a115cb527dbabf686f2cad5464 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00800.WXS.N.hg38 C3L-00800 CCRCC WXS blood_normal CPT0029460002 315ae7de-a352-42c6-84df-468470b72af9_gdc_realn.bam 31174972580 BAM harmonized CPTAC3 e4502b00-9363-45db-91de-98f49c8c032b f3ce4c7ef4f3f27c4eb260d487295f24 {"aliquot_tag": "ALQ_35a5cbf9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00800.WXS.T C3L-00800 CCRCC WXS tumor CPT0025290009 CPT0025290009.WholeExome.RP-1303.bam 26288979934 BAM submitted_aligned CPTAC3 d7288e76-c38e-47a0-a9ac-a4b22af8ad35 697a36922b513fb07030b0e71e9488a6 {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00800.WXS.T.hg38 C3L-00800 CCRCC WXS tumor CPT0025290009 fb0a5b93-cf6f-4913-a95f-3f650242406e_gdc_realn.bam 36282163449 BAM harmonized CPTAC3 248e2530-f079-46bd-9aa0-fe592a878707 b510707b479b56631bf21eccff21f75a {"aliquot_tag": "ALQ_31de0cc9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00807.MethArray.Green.Tpb C3L-00807 AML Methylation_Array tumor_peripheral_blood CPT0262160002 203561450006_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b4c7b3eb-951f-4f06-badb-0468fdcdbc00 678c7b103684e2c9d9572cc465a98192 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.MethArray.Red.Tpb C3L-00807 AML Methylation_Array tumor_peripheral_blood CPT0262160002 203561450006_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9850a500-269c-432d-904e-739307380342 19751057e1268af936916108dfbba2d0 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.miRNA-Seq.S8_L004_R1.Tpb C3L-00807 AML miRNA-Seq tumor_peripheral_blood CPT0262170002 190813_UNC32-K00270_0196_AH5MCWBBXY_GAGTGG_S8_L004_R1_001.unaln.bam 167813813 BAM S8_L004_R1 submitted_unaligned CPTAC3 39758953-6c41-49d8-bda2-ff1447bb0f94 e1994ca6e692dce9cf954ca550d97c4a {"aliquot_tag": "ALQ_f0b3017c", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.miRNA-Seq.Tpb.hg38 C3L-00807 AML miRNA-Seq tumor_peripheral_blood CPT0262170002 62e606e2-f304-4820-9096-2302b3b8adb3_mirnaseq_gdc_realn.bam 196363962 BAM harmonized CPTAC3 a735b069-fdb8-4013-8878-496dc5492c50 4be4610840c5267c9c6e5f4a800a762f {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.RNA-Seq.chimeric.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.chimeric.gdc_realn.bam 26913190 BAM chimeric harmonized CPTAC3 39535f49-fd42-405f-92ac-6894b66a960e b1b4748ae031388a009b1d0af56817eb {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.RNA-Seq.genomic.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.genomic.gdc_realn.bam 6896604411 BAM genomic harmonized CPTAC3 2ffffb00-947a-4ea4-acff-5b494edd200f aeddebcd07bfe9ef91394b0c5e8b07d2 {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.RNA-Seq.S9_L003_R1.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R1_001.fastq.gz 3247473070 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 8a747393-0639-4d97-ac15-1707590bb135 2dbe4aad3ae30c444d920353c1dc0085 {"aliquot_tag": "ALQ_f0b3017c", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.RNA-Seq.S9_L003_R2.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R2_001.fastq.gz 3560938323 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 c116d373-027e-4a79-a055-94b61358e8a3 06e1067c45d56e4a6e085e65272ae156 {"aliquot_tag": "ALQ_f0b3017c", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.RNA-Seq.transcriptome.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.transcriptome.gdc_realn.bam 6363558457 BAM transcriptome harmonized CPTAC3 c36e4031-a022-4172-bca2-fee36c561b00 9ab41c93bd0347bdafdf004164ef78c1 {"aliquot_tag": "ALQ_f0b3017c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.WGS.Nbc C3L-00807 AML WGS buccal_normal CPT0262150002 CPT0262150002.WholeGenome.RP-1303.bam 75552605388 BAM submitted_aligned CPTAC3 a4b6dd61-cd08-4d49-bbf2-d0a99323dca6 320ab01cca65a1d94a9d049816148cb0 {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00807.WGS.Nbc.hg38 C3L-00807 AML WGS buccal_normal CPT0262150002 479d2c1e-82ce-44c1-8ac1-1bb7c4435048_wgs_gdc_realn.bam 110378245946 BAM harmonized CPTAC3 701200bb-b981-401f-8c0f-60733974b257 950cc96697d0d3aaf1f5fa72b09b3b14 {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00807.WGS.Tpb C3L-00807 AML WGS tumor_peripheral_blood CPT0262160002 CPT0262160002.WholeGenome.RP-1303.bam 71785925582 BAM submitted_aligned CPTAC3 42fa2d10-0798-4450-99f9-5523b1dacaf3 f8b8557832c1becb0f0a02c9d0ef4e4d {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.WGS.Tpb.hg38 C3L-00807 AML WGS tumor_peripheral_blood CPT0262160002 f1ff1a75-6145-4e73-b317-92ba9804e58d_wgs_gdc_realn.bam 106678655022 BAM harmonized CPTAC3 5301fffb-fbba-437b-8ad1-18d5252a1f8e 1768b5b04585ee6c7771fa9c3e8e550e {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.WXS.Nbc C3L-00807 AML WXS buccal_normal CPT0262150002 CPT0262150002.WholeExome.RP-1303.bam 29123805835 BAM submitted_aligned CPTAC3 2f0f63c1-0930-45a3-a092-046a08598b64 8feccc6ae87c9a0623089d29d382d3fc {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00807.WXS.Nbc.hg38 C3L-00807 AML WXS buccal_normal CPT0262150002 479d2c1e-82ce-44c1-8ac1-1bb7c4435048_wxs_gdc_realn.bam 40517157349 BAM harmonized CPTAC3 ed532c19-95de-41e3-91b8-a96ac0770176 a96720a2fbffae073d7cf6e9e15fbf3f {"aliquot_tag": "ALQ_8a73521c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00807.WXS.Tpb C3L-00807 AML WXS tumor_peripheral_blood CPT0262160002 CPT0262160002.WholeExome.RP-1303.bam 22776600667 BAM submitted_aligned CPTAC3 ed7b153a-3881-4a38-a74c-494a31d95ce9 522d8890c9d45055b55eaba1cf4022f4 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00807.WXS.Tpb.hg38 C3L-00807 AML WXS tumor_peripheral_blood CPT0262160002 f1ff1a75-6145-4e73-b317-92ba9804e58d_wxs_gdc_realn.bam 31074696718 BAM harmonized CPTAC3 e06ccd34-1fcb-45f5-9293-08c3bf9e0fd1 4cf08e49edd68a5fda572bec571b17b7 {"aliquot_tag": "ALQ_cdd328cc", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.MethArray.Green.Tpb C3L-00810 AML Methylation_Array tumor_peripheral_blood CPT0262010002 203561450020_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 50fac287-4b80-4c88-9228-6606228b180c 563edf87c0bd03aea864756944920734 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.MethArray.Red.Tpb C3L-00810 AML Methylation_Array tumor_peripheral_blood CPT0262010002 203561450020_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 dfec6065-90ed-45f0-82c2-bdeb2d62d830 8f6e76ecd74d3ef3fe9b2580227d90de {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.miRNA-Seq.S7_L004_R1.Tpb C3L-00810 AML miRNA-Seq tumor_peripheral_blood CPT0262020002 190813_UNC32-K00270_0196_AH5MCWBBXY_CGTACG_S7_L004_R1_001.unaln.bam 166691946 BAM S7_L004_R1 submitted_unaligned CPTAC3 b7eaa002-a923-4f17-ab4b-7c30ea1ea83f 7c98cd13e3c5f7eab37a5ad0adee4019 {"aliquot_tag": "ALQ_f30f5da9", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.miRNA-Seq.Tpb.hg38 C3L-00810 AML miRNA-Seq tumor_peripheral_blood CPT0262020002 fb63b178-fa49-40b5-b159-3829a22d3891_mirnaseq_gdc_realn.bam 193044938 BAM harmonized CPTAC3 3900303f-44f5-476d-b2c8-ba8cac4389c7 6abf7286d1f62af5c6eba4670d787baa {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.RNA-Seq.chimeric.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.chimeric.gdc_realn.bam 33784209 BAM chimeric harmonized CPTAC3 5c37ff33-2e10-48d9-972a-e603591f037a b808e0ba937ef5c93ad0b2478cffd724 {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.RNA-Seq.genomic.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.genomic.gdc_realn.bam 6058300861 BAM genomic harmonized CPTAC3 bfca4bd8-f71a-4221-9c8d-ce5f91c4ed48 9d90974c0fc397a1832478b1701cfc9f {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.RNA-Seq.S16_L004_R1.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R1_001.fastq.gz 2913159678 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 bfe8cb7e-970f-4949-ae57-48159f412d82 86a1fa8c6e44654622856f61fdfee4b6 {"aliquot_tag": "ALQ_f30f5da9", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.RNA-Seq.S16_L004_R2.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R2_001.fastq.gz 3160832095 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 59239c3a-eb53-418a-9c4d-45f19dfa72d6 4b1435e26eccc4c7cfaae6d530b19ab2 {"aliquot_tag": "ALQ_f30f5da9", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.RNA-Seq.transcriptome.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.transcriptome.gdc_realn.bam 4573701080 BAM transcriptome harmonized CPTAC3 6a8159e8-5c33-4ed1-b363-1b49efcd2ba7 5df28e559088399a3035ef82dc8ac7b7 {"aliquot_tag": "ALQ_f30f5da9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.WGS.Nbc C3L-00810 AML WGS buccal_normal CPT0262000002 CPT0262000002.WholeGenome.RP-1303.bam 80588637814 BAM submitted_aligned CPTAC3 d7cf7b44-30e6-476c-bb34-d428a5974d5a 3504cc7a6253e5f83710a5158f502f47 {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00810.WGS.Nbc.hg38 C3L-00810 AML WGS buccal_normal CPT0262000002 a98b51e2-67be-4afb-8bfa-ff5c19ed0b8c_wgs_gdc_realn.bam 117141414310 BAM harmonized CPTAC3 0fad2924-7c7b-4dfe-92b0-bde428f1823a 763cfcf43cf5e5fb07a85490fc245943 {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00810.WGS.Tpb C3L-00810 AML WGS tumor_peripheral_blood CPT0262010002 CPT0262010002.WholeGenome.RP-1303.bam 72142513624 BAM submitted_aligned CPTAC3 de0973e4-f656-4983-b48c-2141bb0ce061 4f7ebedee9ada0487c970a0190cf5745 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.WGS.Tpb.hg38 C3L-00810 AML WGS tumor_peripheral_blood CPT0262010002 416ca4c8-5a7e-4aeb-a376-321e8fe88a51_wgs_gdc_realn.bam 103985892606 BAM harmonized CPTAC3 a0fa533d-0c42-4be2-aeab-5fe971c6bd0b 019bff3a8282bf32fee3b0bebf841349 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.WXS.Nbc C3L-00810 AML WXS buccal_normal CPT0262000002 CPT0262000002.WholeExome.RP-1303.bam 25128191741 BAM submitted_aligned CPTAC3 d0e0d23d-ccc6-4dca-9129-d939fb0c0747 07c72d7edcbb770914d0d69fa9d40a5f {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00810.WXS.Nbc.hg38 C3L-00810 AML WXS buccal_normal CPT0262000002 a98b51e2-67be-4afb-8bfa-ff5c19ed0b8c_wxs_gdc_realn.bam 34749647940 BAM harmonized CPTAC3 95b24b1e-a608-40d0-ae95-f20672efac6d 1047a328721c05d416c80f8232f7b6e8 {"aliquot_tag": "ALQ_89cf0ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-00810.WXS.Tpb C3L-00810 AML WXS tumor_peripheral_blood CPT0262010002 CPT0262010002.WholeExome.RP-1303.bam 22135928415 BAM submitted_aligned CPTAC3 40e7013c-e358-4709-82fa-3a636d78a2cb 76402bcff328f0a7aa8b4e2b1d0f3937 {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00810.WXS.Tpb.hg38 C3L-00810 AML WXS tumor_peripheral_blood CPT0262010002 416ca4c8-5a7e-4aeb-a376-321e8fe88a51_wxs_gdc_realn.bam 29913315490 BAM harmonized CPTAC3 cd4b8592-4d3e-4d27-84e8-14adcbffb9d1 cc3dd39d78f60bc4eb82a28dd73ac84b {"aliquot_tag": "ALQ_b4af2779", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-00812.MethArray.Green.T C3L-00812 CCRCC Methylation_Array tumor CPT0025350009 202184900149_R02C01_Grn.idat 13676256 IDAT Green NA CPTAC3 9c002298-3da4-40ce-a41e-d5425f821e00 9143d8df043be7c8319b407812675ce3 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.MethArray.Red.T C3L-00812 CCRCC Methylation_Array tumor CPT0025350009 202184900149_R02C01_Red.idat 13676256 IDAT Red NA CPTAC3 9d1f5316-2e3c-4786-a9fc-0c996aee078b ffdb1e7965d867d504b7c48722ce0e63 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.miRNA-Seq.S5_L003_R1.T C3L-00812 CCRCC miRNA-Seq tumor CPT0025350006 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L003_R1_001.unaln.bam 250037965 BAM S5_L003_R1 submitted_unaligned CPTAC3 fa22b9bf-14a8-40e4-a9a9-586049f1f3f1 57374c28a0d78d1e02e911b85eb4d234 {"aliquot_tag": "ALQ_afcd2ffc", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.miRNA-Seq.T.hg38 C3L-00812 CCRCC miRNA-Seq tumor CPT0025350006 94abf4fb-3d8f-49c5-94ba-fede597f1f03_mirnaseq_gdc_realn.bam 279250047 BAM harmonized CPTAC3 2121ec54-c1fb-44b5-bbd2-6aab2b5525a8 d774296caa08c50572ac9c20b46e16e1 {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.RNA-Seq.chimeric.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.chimeric.gdc_realn.bam 66262745 BAM chimeric harmonized CPTAC3 c16178d5-8570-4140-868b-3ff2d5095149 b37d1fb2e49512e306bf32e8da2f853f {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.RNA-Seq.genomic.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.genomic.gdc_realn.bam 8200783169 BAM genomic harmonized CPTAC3 610fc761-4059-4aa4-92e4-6697715ffe32 28e76aa3fbd287ad95fccd9b3422279d {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.RNA-Seq.S5_L007_R1.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R1_001.fastq.gz 3612405094 FASTQ S5_L007_R1 submitted_unaligned CPTAC3 abf42781-c4d0-4a52-b329-8de564805f8b a5cc76493fc2cdcd2eff8488b2fe4de2 {"aliquot_tag": "ALQ_afcd2ffc", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.RNA-Seq.S5_L007_R2.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R2_001.fastq.gz 3957100302 FASTQ S5_L007_R2 submitted_unaligned CPTAC3 e3515d50-bb69-4fb5-89f7-441d3db64a27 046424cf21232c1d12431dc25ed7d571 {"aliquot_tag": "ALQ_afcd2ffc", "sample": "S5", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.RNA-Seq.transcriptome.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.transcriptome.gdc_realn.bam 9358430075 BAM transcriptome harmonized CPTAC3 3a4e0cef-744e-424a-a447-bfdf72b7d0b4 bc6828684cd576dd61881d97999432ec {"aliquot_tag": "ALQ_afcd2ffc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.WGS.N C3L-00812 CCRCC WGS blood_normal CPT0029480002 CPT0029480002.WholeGenome.RP-1303.bam 59951874176 BAM submitted_aligned CPTAC3 317bf541-ff75-4160-b7a3-3f40e0a6dba1 020d386009ba09c7bce6a4aee221f382 {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00812.WGS.N.hg38 C3L-00812 CCRCC WGS blood_normal CPT0029480002 eef37503-1d13-474e-a21e-14f85891bfb6_gdc_realn.bam 86532498944 BAM harmonized CPTAC3 7ee344ee-0ee5-450d-a98f-59ea2d43bfed c0c38aead18e3f88730766f46ac26bba {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00812.WGS.T C3L-00812 CCRCC WGS tumor CPT0025350009 CPT0025350009.WholeGenome.RP-1303.bam 75172277693 BAM submitted_aligned CPTAC3 56e33164-49f8-4ccd-ac01-9ac87513740c 38979c6db969e1eeaed15aa5f8ced2e8 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.WGS.T.hg38 C3L-00812 CCRCC WGS tumor CPT0025350009 b00a1765-5cf8-4aba-a08e-93084f908210_gdc_realn.bam 109260393866 BAM harmonized CPTAC3 74f2bc12-d0cf-4af4-a8be-759799d519a7 db6a2032a3d16a34bfe8a5278ea79f68 {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.WXS.N C3L-00812 CCRCC WXS blood_normal CPT0029480002 CPT0029480002.WholeExome.RP-1303.bam 24330564906 BAM submitted_aligned CPTAC3 fedb2686-52a2-42d4-a35b-d9baa00a8a86 debde633bac5c28a263d1a897bc021c0 {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00812.WXS.N.hg38 C3L-00812 CCRCC WXS blood_normal CPT0029480002 eef37503-1d13-474e-a21e-14f85891bfb6_gdc_realn.bam 34054782081 BAM harmonized CPTAC3 50ce4759-7b32-46df-a29b-85f815322c83 a5936d1595b2a041f6867354d51bd55a {"aliquot_tag": "ALQ_8a957598", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00812.WXS.T C3L-00812 CCRCC WXS tumor CPT0025350009 CPT0025350009.WholeExome.RP-1303.bam 22047195802 BAM submitted_aligned CPTAC3 2cc11eaa-9599-4654-8e07-00e4fa0dc828 4e67ddac1f774904e380cc467260b3ed {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00812.WXS.T.hg38 C3L-00812 CCRCC WXS tumor CPT0025350009 b00a1765-5cf8-4aba-a08e-93084f908210_gdc_realn.bam 30188260694 BAM harmonized CPTAC3 cd47be26-4d00-4834-92bc-7aa9331ff9df b1160405a2ae906877ea1b7273a525bc {"aliquot_tag": "ALQ_3f72326d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.MethArray.Green.T C3L-00813 CCRCC Methylation_Array tumor CPT0015810013 202176290145_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6c52c574-51e0-4c7c-a61c-aa9e75b3d61f a0448bd68cd31687add96f2e11c18549 {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.MethArray.Red.T C3L-00813 CCRCC Methylation_Array tumor CPT0015810013 202176290145_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 97e3585a-b426-4bd0-a256-72411ee2cd8b 62ee257ebf5fe84ce4540a4a5cef76b1 {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.miRNA-Seq.S16_L001_R1.T C3L-00813 CCRCC miRNA-Seq tumor CPT0015810009 181113_UNC31-K00269_0164_AH23NNBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 224887107 BAM S16_L001_R1 submitted_unaligned CPTAC3 8d127064-4c1c-4121-a39e-6548377381f7 4fd52da108f6d198ad26f9ccb6d6f676 {"aliquot_tag": "ALQ_2eba638d", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.miRNA-Seq.T.hg38 C3L-00813 CCRCC miRNA-Seq tumor CPT0015810009 96e347cf-b5c6-46af-a8c6-8ffc8cb0288e_mirnaseq_gdc_realn.bam 254067251 BAM harmonized CPTAC3 6af3875d-53e6-41dd-af28-77921b289be5 d17892b1c4da0cc381cf0c5c5b1abea2 {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.RNA-Seq.chimeric.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.chimeric.gdc_realn.bam 61593527 BAM chimeric harmonized CPTAC3 04200873-03c3-482f-b737-a2701fdc6561 2d21053528fb9290e7d442837b8e9d81 {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.RNA-Seq.genomic.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.genomic.gdc_realn.bam 7978272108 BAM genomic harmonized CPTAC3 fc92ce18-2a1d-44f7-bd47-b01a9b0440ca 5b5d3df5048092e6ea8977365a70cb1c {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.RNA-Seq.S7_L002_R1.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R1_001.fastq.gz 3946073267 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 a117dea5-d8bb-459c-bc39-6f343d8d5b72 8a35a64608d5091d5f0740620827b370 {"aliquot_tag": "ALQ_2eba638d", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.RNA-Seq.S7_L002_R2.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R2_001.fastq.gz 4283241334 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 834c6145-bfcf-4387-9477-668190a210d3 1a3e6cd526c49d49c885118989e9f974 {"aliquot_tag": "ALQ_2eba638d", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.RNA-Seq.transcriptome.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.transcriptome.gdc_realn.bam 11836945306 BAM transcriptome harmonized CPTAC3 040ea4d1-2c07-4980-acbc-22b349903c5d 9906dd195631e15ac92e98a1f28fe47f {"aliquot_tag": "ALQ_2eba638d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.WGS.N C3L-00813 CCRCC WGS blood_normal CPT0018370002 CPT0018370002.WholeGenome.RP-1303.bam 70121087469 BAM submitted_aligned CPTAC3 d30961cd-9174-4858-8fcb-90a118c0db08 fbc3766fc88cf1e4cc89ac74eb05528d {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00813.WGS.N.hg38 C3L-00813 CCRCC WGS blood_normal CPT0018370002 0bbc61b3-23ba-496e-a17b-742f0fd3c780_gdc_realn.bam 111257920827 BAM harmonized CPTAC3 792744c0-d9c5-4271-a6a7-8fe408482ff2 9224c85a13f920c3564420ede78b14df {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00813.WGS.T C3L-00813 CCRCC WGS tumor CPT0015810013 CPT0015810013.WholeGenome.RP-1303.bam 62869567864 BAM submitted_aligned CPTAC3 e109d012-510d-4963-9e27-93e66afa83b0 362dbcb37234b07a6bd093c069b3044b {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.WGS.T.hg38 C3L-00813 CCRCC WGS tumor CPT0015810013 72ea324c-4896-476d-9083-b68b4858a157_gdc_realn.bam 94010650600 BAM harmonized CPTAC3 ee8d8148-4eb3-4858-b4b2-e27cef547c9c 3508251fa4c8792041418aab65c7886e {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.WXS.N C3L-00813 CCRCC WXS blood_normal CPT0018370002 CPT0018370002.WholeExome.RP-1303.bam 26260258076 BAM submitted_aligned CPTAC3 0a5fb154-0fef-4420-99fa-ab9bd0eb0ec6 2c1aae9074482f00d1afbde17f0a494b {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00813.WXS.N.hg38 C3L-00813 CCRCC WXS blood_normal CPT0018370002 0bbc61b3-23ba-496e-a17b-742f0fd3c780_gdc_realn.bam 35090202937 BAM harmonized CPTAC3 9fe97cd7-d49a-45db-af65-a0a28862b539 5d7dd205740be158d577efea3f350fae {"aliquot_tag": "ALQ_3d38dea6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00813.WXS.T C3L-00813 CCRCC WXS tumor CPT0015810013 CPT0015810013.WholeExome.RP-1303.bam 36899336702 BAM submitted_aligned CPTAC3 228d94be-09e4-49b9-a93b-ba46bd521397 7b77dbb331b094c7efae701eb04b147d {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00813.WXS.T.hg38 C3L-00813 CCRCC WXS tumor CPT0015810013 72ea324c-4896-476d-9083-b68b4858a157_gdc_realn.bam 52374356457 BAM harmonized CPTAC3 72b80bc9-60ad-49fd-96e1-811ffb846fa8 581f6608660f251ecbe3d0791d2e0fd2 {"aliquot_tag": "ALQ_d774bbd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.MethArray.Green.A C3L-00814 CCRCC Methylation_Array tissue_normal CPT0065820009 204930640064_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9b88da7d-981a-439f-a0be-ec8b93ab044d f45f9e06579e2c98e6bfc80067b45adb {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.MethArray.Green.T C3L-00814 CCRCC Methylation_Array tumor CPT0065810009 202163530118_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 9de8b8d5-ba07-4de2-b3f7-706e57bbc2c8 aff34a6a40bca7b3ad516089a71e3766 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.MethArray.Red.A C3L-00814 CCRCC Methylation_Array tissue_normal CPT0065820009 204930640064_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 60197d69-056f-40ed-b3c6-0fda30cb672b 01e12e691307c5d2794f20362b7656bf {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.MethArray.Red.T C3L-00814 CCRCC Methylation_Array tumor CPT0065810009 202163530118_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 4ab9c2b1-15db-4bcc-80a8-6e2fe752c7d9 cae8af198b88fdc00b5d94a8bcd1e155 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.miRNA-Seq.A.hg38 C3L-00814 CCRCC miRNA-Seq tissue_normal CPT0065820006 9478b81c-4959-4780-b5e1-57ea6bfb5c6b_mirnaseq_gdc_realn.bam 195255300 BAM harmonized CPTAC3 f8726fb5-f22a-4b0b-be5c-a60956a97a06 fada1ba07c45562f6bcb4fe2dec93bdb {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.miRNA-Seq.S8_L001_R1.T C3L-00814 CCRCC miRNA-Seq tumor CPT0065810006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L001_R1_001.unaln.bam 160101992 BAM S8_L001_R1 submitted_unaligned CPTAC3 ed1fbc80-6ea2-4466-8730-0e0b3c5ec0b9 a318ca619cd7b80a831b10a9346bfb31 {"aliquot_tag": "ALQ_b4c07705", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.miRNA-Seq.S9_L003_R1.A C3L-00814 CCRCC miRNA-Seq tissue_normal CPT0065820006 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L003_R1_001.unaln.bam 179140511 BAM S9_L003_R1 submitted_unaligned CPTAC3 b9bd98bd-c506-4103-8682-be9a52a1035f 58f302c7efdeeae8ff91533ef4547f49 {"aliquot_tag": "ALQ_f3600dd5", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.miRNA-Seq.T.hg38 C3L-00814 CCRCC miRNA-Seq tumor CPT0065810006 511b4c0c-e2e6-4a9f-aa8e-917474e1751a_mirnaseq_gdc_realn.bam 176374221 BAM harmonized CPTAC3 468554f1-be76-4a7d-b35d-1287f9454487 24b293d977f1d82df325f1f647c9f006 {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.RNA-Seq.chimeric.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.chimeric.gdc_realn.bam 41540068 BAM chimeric harmonized CPTAC3 6eeba53f-ec0f-4fc1-91aa-fb85346b9a88 ffe100853daf8804c84348754aa44ac7 {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.RNA-Seq.chimeric.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.chimeric.gdc_realn.bam 31329232 BAM chimeric harmonized CPTAC3 6810b495-6b67-433b-9663-5243b3c05fb0 5c8b28f79e0846fe23779fdf7d764641 {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.RNA-Seq.genomic.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.genomic.gdc_realn.bam 7499589853 BAM genomic harmonized CPTAC3 ebd9749b-c0fd-4e43-8ce7-0ca8e93bda45 3cd956357872c81f5d13472c42edef51 {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.RNA-Seq.genomic.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.genomic.gdc_realn.bam 7535796418 BAM genomic harmonized CPTAC3 59c383ee-a015-484b-9533-97e868305503 ec1e065f6c087585a6f4941a7bc2537e {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.RNA-Seq.S15_L004_R1.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R1_001.fastq.gz 3709278929 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 39918e6c-f138-416c-b920-ad55050089e9 2d0ffb776bf851cdd877b22544693fa7 {"aliquot_tag": "ALQ_b4c07705", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.RNA-Seq.S15_L004_R2.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R2_001.fastq.gz 3989624906 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 de1b355e-e95d-4d9e-b78d-1158f45d334a 4496183825d92ca20d99c72709954e39 {"aliquot_tag": "ALQ_b4c07705", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.RNA-Seq.S17_L005_R1.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R1_001.fastq.gz 3652042216 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 37f96ce9-71ea-4623-821b-3a70e23ca2ec 1a42796668b7be956c9b7680e8cba0c4 {"aliquot_tag": "ALQ_f3600dd5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.RNA-Seq.S17_L005_R2.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R2_001.fastq.gz 4004692485 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 9af9f0fe-0a10-4b2d-90fc-74d26a2c4766 7b7cccb26aeb1bb3285119cdd20b8b41 {"aliquot_tag": "ALQ_f3600dd5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.RNA-Seq.transcriptome.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.transcriptome.gdc_realn.bam 9173524185 BAM transcriptome harmonized CPTAC3 979c4778-1ba1-43ba-b6d8-f82184438e92 d30be2ed04c71c24842684371f584183 {"aliquot_tag": "ALQ_f3600dd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.RNA-Seq.transcriptome.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.transcriptome.gdc_realn.bam 10398097711 BAM transcriptome harmonized CPTAC3 9a1eef21-784f-4a54-88e7-4e7732fe9575 fdb48bd768465f6a4f9393c87980a1e0 {"aliquot_tag": "ALQ_b4c07705", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.WGS.A C3L-00814 CCRCC WGS tissue_normal CPT0065820009 CPT0065820009.WholeGenome.RP-1303.bam 58881456077 BAM submitted_aligned CPTAC3 1c3c83d8-d68f-4fa9-8d02-6085ba865e71 b30c628f7965a3f1a6ee7c634d1ac326 {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.WGS.A.hg38 C3L-00814 CCRCC WGS tissue_normal CPT0065820009 20cace74-309d-4fb2-9fc3-f84353279a68_wgs_gdc_realn.bam 86709582133 BAM harmonized CPTAC3 54b744e5-fe56-484b-9ea4-524fd9f80618 eebfdd6e57e73a6defdc432aadf275c6 {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.WGS.N C3L-00814 CCRCC WGS blood_normal CPT0067690002 CPT0067690002.WholeGenome.RP-1303.bam 83902431250 BAM submitted_aligned CPTAC3 e209c1ff-90ad-4051-92d9-a81f18629db4 83217d52bcd3b9a6e4a111821b346e3d {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00814.WGS.N.hg38 C3L-00814 CCRCC WGS blood_normal CPT0067690002 b43ccc67-58a3-4638-acfa-b59101456087_gdc_realn.bam 126492416442 BAM harmonized CPTAC3 ec37c8d6-0724-46b6-b268-9901a9f66c31 c389235b35f68d7d70da6bb325bc6f46 {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00814.WGS.T C3L-00814 CCRCC WGS tumor CPT0065810009 CPT0065810009.WholeGenome.RP-1303.bam 72146434732 BAM submitted_aligned CPTAC3 7134050c-931f-4511-99f6-f604d79bdfef b92993a02b8dd19ba6f3486ff055eff0 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.WGS.T.hg38 C3L-00814 CCRCC WGS tumor CPT0065810009 6f1646a7-8d91-43c9-8419-d296bbcc8d8a_gdc_realn.bam 107345027299 BAM harmonized CPTAC3 d0a9421e-60aa-4111-88b1-5803bb5dbb17 5ddc87e4638669b4ae4f3722221c1a4d {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.WXS.A C3L-00814 CCRCC WXS tissue_normal CPT0065820009 CPT0065820009.WholeExome.RP-1303.bam 35875777194 BAM submitted_aligned CPTAC3 49d17b8a-0ffe-4ef7-b273-66cb6ddd9145 d962ee61daa6fc22de529f22d7c6a2eb {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.WXS.A.hg38 C3L-00814 CCRCC WXS tissue_normal CPT0065820009 20cace74-309d-4fb2-9fc3-f84353279a68_wxs_gdc_realn.bam 47751031748 BAM harmonized CPTAC3 2bf925ad-7db0-473b-a0fc-5c72735642df df855e5b4819d083d5480cee624d2881 {"aliquot_tag": "ALQ_63df1044", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00814.WXS.N C3L-00814 CCRCC WXS blood_normal CPT0067690002 CPT0067690002.WholeExome.RP-1303.bam 39169511337 BAM submitted_aligned CPTAC3 c3ff1d40-0d4e-463a-a696-58ead61b586b 35057c0d98f3b7820cd0157679d376f1 {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00814.WXS.N.hg38 C3L-00814 CCRCC WXS blood_normal CPT0067690002 b43ccc67-58a3-4638-acfa-b59101456087_gdc_realn.bam 54241635583 BAM harmonized CPTAC3 8660d0f5-aeaf-4fbd-9a83-9bfb0ab32442 9236d7a4542846c2924c9f446c53d2bc {"aliquot_tag": "ALQ_2e488884", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00814.WXS.T C3L-00814 CCRCC WXS tumor CPT0065810009 CPT0065810009.WholeExome.RP-1303.bam 31409743304 BAM submitted_aligned CPTAC3 eb49b605-f187-49e7-9d75-d9759162b195 489a07e3ecb3a0760ec996daa615c70b {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00814.WXS.T.hg38 C3L-00814 CCRCC WXS tumor CPT0065810009 6f1646a7-8d91-43c9-8419-d296bbcc8d8a_gdc_realn.bam 44268563558 BAM harmonized CPTAC3 1abd1b8e-e04c-4cd8-ab14-a4b2c8ddec89 d1e3efac997e184ac70ce3e79291c427 {"aliquot_tag": "ALQ_247f6a94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.MethArray.Green.T C3L-00815 CCRCC Methylation_Array tumor CPT0085730009 202176290095_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1e89e884-25c6-402c-9ddd-910244cb8436 e0a47a9388bf56ee6d704b2686891960 {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.MethArray.Red.T C3L-00815 CCRCC Methylation_Array tumor CPT0085730009 202176290095_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 3f604877-5694-4114-a757-3893ac4e135f 1fa7d1976c637e255826ceb62daa6ae3 {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.miRNA-Seq.S4_L008_R1.T C3L-00815 CCRCC miRNA-Seq tumor CPT0085730006 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L008_R1_001.unaln.bam 227973893 BAM S4_L008_R1 submitted_unaligned CPTAC3 e6c9171d-7dc0-43e9-93fe-7d0b98ef6d6b 4bd69a5e4a66d9846b5acb39814c5ff9 {"aliquot_tag": "ALQ_2adc8482", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.miRNA-Seq.T.hg38 C3L-00815 CCRCC miRNA-Seq tumor CPT0085730006 12c50653-4b54-401e-bb6b-fc87aad92208_mirnaseq_gdc_realn.bam 244333825 BAM harmonized CPTAC3 4c3b43b3-da00-493c-a7d0-94ac6258a23d b721b0ec69cfd00aac2489120db8707a {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.RNA-Seq.chimeric.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.chimeric.gdc_realn.bam 42879216 BAM chimeric harmonized CPTAC3 328186b1-03a3-47ea-a5f9-41f0119bee9b 6266caabf77cf098069c94358a708284 {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.RNA-Seq.genomic.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.genomic.gdc_realn.bam 9766323011 BAM genomic harmonized CPTAC3 a9dd1414-1baf-4974-975b-9fe3f288e02f f8f3cfa3c8dbc8451994c162ecbc42ea {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.RNA-Seq.S6_L002_R1.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4856376651 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 2ff4b902-07d3-45ad-a880-5808b1b9d437 d9180e8304f2ba38ebe776d72e69d946 {"aliquot_tag": "ALQ_2adc8482", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.RNA-Seq.S6_L002_R2.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R2_001.fastq.gz 5336892992 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 1e009da5-b71d-4d50-80e6-f002f6ccd12e 25b2f70e5c1df404322ff8c12f304026 {"aliquot_tag": "ALQ_2adc8482", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.RNA-Seq.transcriptome.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.transcriptome.gdc_realn.bam 14061603448 BAM transcriptome harmonized CPTAC3 cc671560-e75a-46d2-b915-1f10bf645d43 62d0f8f17a32159a1908de22cc2bb4fa {"aliquot_tag": "ALQ_2adc8482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.WGS.N C3L-00815 CCRCC WGS blood_normal CPT0086630002 CPT0086630002.WholeGenome.RP-1303.bam 85458167247 BAM submitted_aligned CPTAC3 cac10480-9df6-408b-8523-430d5ad8a090 4c6b22f38e31cd67694673fb2388e30d {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00815.WGS.N.hg38 C3L-00815 CCRCC WGS blood_normal CPT0086630002 ddeb7283-32f0-4c57-82df-5ab00872ee85_gdc_realn.bam 127875515573 BAM harmonized CPTAC3 8818b1b6-0755-4b63-a605-3bc287c78736 23575c65dab0a9d364ffcb3731a885cf {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00815.WGS.T C3L-00815 CCRCC WGS tumor CPT0085730009 CPT0085730009.WholeGenome.RP-1303.bam 66865376825 BAM submitted_aligned CPTAC3 a32ab6f5-3ac7-4b24-9f2e-667e738b906b 4d17141e93021e60d7ac8fa971e1aebc {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.WGS.T.hg38 C3L-00815 CCRCC WGS tumor CPT0085730009 537cf171-816c-4aa5-a19a-874cebf60b29_gdc_realn.bam 99213229185 BAM harmonized CPTAC3 86c9916f-ba15-4ac5-9560-579568e81527 6a6f52d33fa3373e06dc8cfda678c90d {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.WXS.N C3L-00815 CCRCC WXS blood_normal CPT0086630002 CPT0086630002.WholeExome.RP-1303.bam 32563146603 BAM submitted_aligned CPTAC3 37814fbd-e2aa-48db-8389-b880add2cc2e af234a5d45f72edcfa18f3c51a3d6665 {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00815.WXS.N.hg38 C3L-00815 CCRCC WXS blood_normal CPT0086630002 ddeb7283-32f0-4c57-82df-5ab00872ee85_gdc_realn.bam 44563181263 BAM harmonized CPTAC3 c3779695-f6f6-4f42-a0a5-c09fc064b89e 135fe406459a79f8faf467cfdef50f65 {"aliquot_tag": "ALQ_d70589a3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00815.WXS.T C3L-00815 CCRCC WXS tumor CPT0085730009 CPT0085730009.WholeExome.RP-1303.bam 37682615581 BAM submitted_aligned CPTAC3 38362fc4-23fa-46ac-aaca-d1955f189548 f16fc527c8aa5fdf67546d27cb174a72 {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00815.WXS.T.hg38 C3L-00815 CCRCC WXS tumor CPT0085730009 537cf171-816c-4aa5-a19a-874cebf60b29_gdc_realn.bam 52175705196 BAM harmonized CPTAC3 b4c401c4-da2e-458e-883e-798c51e12ac3 0c00f1e52da97e2d87957734ee9e281f {"aliquot_tag": "ALQ_ba639913", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.MethArray.Green.T C3L-00817 CCRCC Methylation_Array tumor CPT0065870009 202184900111_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 0d6ae836-f2b9-4aab-9bf2-613cb6157a3c fdf04bb41764d25c26e2681cec774be1 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.MethArray.Red.T C3L-00817 CCRCC Methylation_Array tumor CPT0065870009 202184900111_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 4a67b550-4110-409c-8ea9-5ebf21a34770 bc72e668882414e280f71fd25b3c7016 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.miRNA-Seq.S9_L001_R1.T C3L-00817 CCRCC miRNA-Seq tumor CPT0065870006 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L001_R1_001.unaln.bam 193820422 BAM S9_L001_R1 submitted_unaligned CPTAC3 cb545abc-4114-4447-a42f-f050bd961856 2e0da21febf7952fdd7142daf229f1eb {"aliquot_tag": "ALQ_3b8082a5", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.miRNA-Seq.T.hg38 C3L-00817 CCRCC miRNA-Seq tumor CPT0065870006 ed31bdbf-f13f-4d3a-bd4c-e6ed56bcda7a_mirnaseq_gdc_realn.bam 214421811 BAM harmonized CPTAC3 e9758466-aebc-45ad-b315-00db376791fe c2571cab51d546f409c6a98bd03f624e {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.RNA-Seq.chimeric.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.chimeric.gdc_realn.bam 30121023 BAM chimeric harmonized CPTAC3 664e5354-9e87-410b-9ccc-1819c5f48061 52d029fecfdb7686438be0fc199cb092 {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.RNA-Seq.genomic.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.genomic.gdc_realn.bam 7843937519 BAM genomic harmonized CPTAC3 7cfee693-b15f-4961-bf83-b53b804d1ca5 5e8b723fa086487918a07efc9d7dd4e8 {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.RNA-Seq.S14_L004_R1.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R1_001.fastq.gz 3900525958 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 62cf4129-5b75-4b79-b8b8-1a6419447193 b22e173e5615aa92300bf86e163afcd1 {"aliquot_tag": "ALQ_3b8082a5", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.RNA-Seq.S14_L004_R2.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R2_001.fastq.gz 4207616546 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 a50f0fbc-6696-4221-87c8-5189b3b668e0 eca75bf307831c9d48d1bb3a8867e04b {"aliquot_tag": "ALQ_3b8082a5", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.RNA-Seq.transcriptome.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.transcriptome.gdc_realn.bam 10130355545 BAM transcriptome harmonized CPTAC3 ec8da02d-9626-4c16-882f-e85330146dc2 be106d148dee5347698ea0fda36b2436 {"aliquot_tag": "ALQ_3b8082a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.WGS.N C3L-00817 CCRCC WGS blood_normal CPT0067710002 CPT0067710002.WholeGenome.RP-1303.bam 74356696274 BAM submitted_aligned CPTAC3 468234ba-5e33-40f9-820b-25fbea5d3638 0f5078147712598d77a0ef9408c1bf61 {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00817.WGS.N.hg38 C3L-00817 CCRCC WGS blood_normal CPT0067710002 cb8f35b5-827c-471e-8b72-b9430f2df9a7_gdc_realn.bam 112200297661 BAM harmonized CPTAC3 02393fcd-7994-41be-abc4-28cf5c63d384 36d6dac6266fc6ee6c6022a462209a46 {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00817.WGS.T C3L-00817 CCRCC WGS tumor CPT0065870009 CPT0065870009.WholeGenome.RP-1303.bam 71253608870 BAM submitted_aligned CPTAC3 032d7376-9bf2-4042-b3d6-fbf2db60bd5d 104d88d2b1e2e41fbf212a3f0a7d5337 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.WGS.T.hg38 C3L-00817 CCRCC WGS tumor CPT0065870009 4f0458b3-ec64-40f2-9332-0a3ecc0ddf46_gdc_realn.bam 107152169446 BAM harmonized CPTAC3 dae673f2-f8f8-439b-b914-961734f38857 35e49c0a8a7b67595f464c74719be7e1 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.WXS.N C3L-00817 CCRCC WXS blood_normal CPT0067710002 CPT0067710002.WholeExome.RP-1303.bam 25525067199 BAM submitted_aligned CPTAC3 fb6cf86f-3e44-45b0-bc4c-35ad27b756be ecb19c5f45ba9780d207c0758faacc5e {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00817.WXS.N.hg38 C3L-00817 CCRCC WXS blood_normal CPT0067710002 cb8f35b5-827c-471e-8b72-b9430f2df9a7_gdc_realn.bam 34524671166 BAM harmonized CPTAC3 672f5d93-b536-4613-8a48-ec5cbfaec36f d6cee80aa8eb20f4957ebaf7d45a65c7 {"aliquot_tag": "ALQ_d56410e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00817.WXS.T C3L-00817 CCRCC WXS tumor CPT0065870009 CPT0065870009.WholeExome.RP-1303.bam 29133509940 BAM submitted_aligned CPTAC3 2f1f0ba1-57ab-4216-b904-173923492ce1 e65371f9486ca98d889dead371b576c5 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00817.WXS.T.hg38 C3L-00817 CCRCC WXS tumor CPT0065870009 4f0458b3-ec64-40f2-9332-0a3ecc0ddf46_gdc_realn.bam 39832687866 BAM harmonized CPTAC3 5306b8f7-ea8b-4305-9958-c8a8e7f41cb9 b31cfe47aa0c1fdf8702f10857c09022 {"aliquot_tag": "ALQ_ab3f9f34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.MethArray.Green.A C3L-00819 PDA Methylation_Array tissue_normal CPT0064110009 203561450062_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 140c9080-35b4-4777-ab78-4341639f0803 a010f58c8fc98e3bc787f6fc2efb200a {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.MethArray.Green.T C3L-00819 PDA Methylation_Array tumor CPT0064090006 202163530120_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 73d82ed8-9a69-4936-b6e0-ddda701f3984 166f12872e1800c34ae77a5c30a74441 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.MethArray.Red.A C3L-00819 PDA Methylation_Array tissue_normal CPT0064110009 203561450062_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5722fef-5183-464a-9be6-13e908273eee 1a1520fea5beb030e58dc7aeba3b1260 {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.MethArray.Red.T C3L-00819 PDA Methylation_Array tumor CPT0064090006 202163530120_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 6bf63db9-982a-4c6f-ae9f-192ef652b68b 14401a3be64ba9866a2e4ea0eb64398e {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.miRNA-Seq.A.hg38 C3L-00819 PDA miRNA-Seq tissue_normal CPT0064110006 2bc43f48-0905-4772-8196-4c44362af840_mirnaseq_gdc_realn.bam 292007947 BAM harmonized CPTAC3 780854af-cb5b-4a9d-9266-5aa19b9092e4 e5eaa903890cd4d02e4cc4937a518018 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.miRNA-Seq.S1_L001_R1.T C3L-00819 PDA miRNA-Seq tumor CPT0064090009 181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L001_R1_001.unaln.bam 255318469 BAM S1_L001_R1 submitted_unaligned CPTAC3 fca7cf7d-9e91-47b6-aee9-286bb135a755 f91837f7805dd4c5434ef183d7896f11 {"aliquot_tag": "ALQ_5e2ba88c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.miRNA-Seq.S3_L001_R1.A C3L-00819 PDA miRNA-Seq tissue_normal CPT0064110006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 262846131 BAM S3_L001_R1 submitted_unaligned CPTAC3 40063f7a-e927-4f97-8e89-99ee4edce0a3 7398236dae7711ca8d9838f715636848 {"aliquot_tag": "ALQ_35b82d79", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.miRNA-Seq.T.hg38 C3L-00819 PDA miRNA-Seq tumor CPT0064090009 83b73a69-429c-4bcd-a1a3-b10278a2bbaa_mirnaseq_gdc_realn.bam 287605283 BAM harmonized CPTAC3 482a084e-1b7c-454d-a2f1-3d750ca9b21e a3a430091246c131c32f9c49996ee2ee {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.RNA-Seq.chimeric.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.chimeric.gdc_realn.bam 112422623 BAM chimeric harmonized CPTAC3 79f1cc17-4a16-47b6-9574-6d7921c58cd0 0ef310deddbc4519a8bb94108fe12567 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.RNA-Seq.chimeric.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.chimeric.gdc_realn.bam 33273642 BAM chimeric harmonized CPTAC3 cb78cfff-2e67-46ad-af4a-00972028b93f b45cef61a588963c90615e57300742c8 {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.RNA-Seq.genomic.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.genomic.gdc_realn.bam 8365765141 BAM genomic harmonized CPTAC3 bb19aa2d-af49-4925-b0d8-a4e2f4168ebf d9a3dd903584bfc3a607a9c2da848f04 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.RNA-Seq.genomic.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.genomic.gdc_realn.bam 8581491176 BAM genomic harmonized CPTAC3 ee03dd97-2d6d-4f60-977d-f9694141cc88 480ee434035214cd608f45b69e218074 {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.RNA-Seq.S10_L008_R1.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R1_001.fastq.gz 3659327584 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 75647260-8a87-4afb-80d6-c24bceee3d65 007731421183be2dec77f7bd8dde346d {"aliquot_tag": "ALQ_35b82d79", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.RNA-Seq.S10_L008_R2.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R2_001.fastq.gz 4213337668 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 dbabf608-5e8b-4202-916e-d6ed4b3015d2 2e8cef57f6756131748974946f465167 {"aliquot_tag": "ALQ_35b82d79", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.RNA-Seq.S1_L006_R1.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R1_001.fastq.gz 4041893731 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 314fa25c-3fa1-406b-a83e-184923a9a843 c274b755280b79070cb4cb06b8c52dad {"aliquot_tag": "ALQ_5e2ba88c", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.RNA-Seq.S1_L006_R2.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R2_001.fastq.gz 4418417585 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 b181b107-249a-4136-954f-0a3022387edc b257678e46388ae27a9a63dad2475307 {"aliquot_tag": "ALQ_5e2ba88c", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.RNA-Seq.transcriptome.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.transcriptome.gdc_realn.bam 10340402864 BAM transcriptome harmonized CPTAC3 713edd23-5b9b-4512-9553-d0bb628d7aa1 d7a6508cb10620048f00f637c021d1c0 {"aliquot_tag": "ALQ_35b82d79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.RNA-Seq.transcriptome.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.transcriptome.gdc_realn.bam 12652726539 BAM transcriptome harmonized CPTAC3 6f32276a-992e-468a-9819-afdcd14ba8a4 fe77d890850062198c74170cea6994d0 {"aliquot_tag": "ALQ_5e2ba88c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.Targeted.T C3L-00819 PDA Targeted_Sequencing tumor CPT0064090006_1 CPT0064090006_1.CustomSelection.RP-1303.PDO-18786.bam 4221294593 BAM submitted_aligned CPTAC3 c6cbcd24-61f5-4991-82ce-3f4f2c9c2801 805fa5999bd513094faf18572ea64c51 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.Targeted.T.hg38 C3L-00819 PDA Targeted_Sequencing tumor CPT0064090006_1 74bafef4-c6ea-4079-94d1-272f647dc377_targetedsequencing_gdc_realn.bam 6105872936 BAM harmonized CPTAC3 035ca893-49e4-4b59-8f08-ea13e64c7b9c c6f62061fef0afeac829046eff0c80f2 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.WGS.A C3L-00819 PDA WGS tissue_normal CPT0064110009 CPT0064110009.WholeGenome.RP-1303.bam 63231664648 BAM submitted_aligned CPTAC3 078fe182-65b8-4baf-998b-3319bb9d26b6 221d5ff78ab7c44cc8914094e892520b {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.WGS.A.hg38 C3L-00819 PDA WGS tissue_normal CPT0064110009 5538bcc6-592f-41c1-9ec1-6282083bbaf2_wgs_gdc_realn.bam 92480690338 BAM harmonized CPTAC3 3c785d1f-f764-4b8e-bc38-bd0be5845d2d 636b7ead016799d8a1d051905ac8beb6 {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.WGS.N C3L-00819 PDA WGS blood_normal CPT0065380002 CPT0065380002.WholeGenome.RP-1303.bam 94778941343 BAM submitted_aligned CPTAC3 75d13112-a83c-4d9c-87d6-705935549bc3 d91be836869b37e12fd1c62cecc8df15 {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00819.WGS.N.hg38 C3L-00819 PDA WGS blood_normal CPT0065380002 83f3c4ba-426e-4a3f-89ab-188cc9b36b61_gdc_realn.bam 148940124149 BAM harmonized CPTAC3 a8b28d95-7d4d-4a5f-8f3d-683f43f71073 8ef960a1344b1dd2735e3211fc707c5c {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00819.WGS.T C3L-00819 PDA WGS tumor CPT0064090006 CPT0064090006.WholeGenome.RP-1303.bam 83238972736 BAM submitted_aligned CPTAC3 f160f51e-87df-4e8e-8fa7-8c0da0a101b0 275597ee2b7ba4e59b03baf8b7a98e12 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.WGS.T.hg38 C3L-00819 PDA WGS tumor CPT0064090006 1b8aafd9-2b75-483d-a424-d7137b43fbdd_gdc_realn.bam 130143942155 BAM harmonized CPTAC3 61085e57-824b-4cc5-ac7e-5896ab9d9c62 0320e284cd911dbdf0a4fc5b12b00da0 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.WXS.A C3L-00819 PDA WXS tissue_normal CPT0064110009 CPT0064110009.WholeExome.RP-1303.bam 22528644853 BAM submitted_aligned CPTAC3 9e708c18-faba-4b5f-a8b3-b5695f19f16e 1603b5910f0bdcf7ad5eb55fb680c0ba {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.WXS.A.hg38 C3L-00819 PDA WXS tissue_normal CPT0064110009 5538bcc6-592f-41c1-9ec1-6282083bbaf2_wxs_gdc_realn.bam 30143624734 BAM harmonized CPTAC3 53e4607e-1957-4988-8007-862376d52e50 c24a3abb6607caa9e2124c688f140adb {"aliquot_tag": "ALQ_a50730e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00819.WXS.N C3L-00819 PDA WXS blood_normal CPT0065380002 CPT0065380002.WholeExome.RP-1303.bam 30551993211 BAM submitted_aligned CPTAC3 75d4513b-0ed9-4455-b7fa-85a58e3987bb e08dfb670a9621bded972a78e690fec2 {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00819.WXS.N.hg38 C3L-00819 PDA WXS blood_normal CPT0065380002 83f3c4ba-426e-4a3f-89ab-188cc9b36b61_gdc_realn.bam 40942297167 BAM harmonized CPTAC3 f327a307-e1d6-4db6-a753-303c420d06bb dece519f92f5abda151f0804a08e7430 {"aliquot_tag": "ALQ_d47a21ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00819.WXS.T C3L-00819 PDA WXS tumor CPT0064090006_1 CPT0064090006_1.WholeExome.RP-1303.bam 60580904130 BAM submitted_aligned CPTAC3 0e891689-22a7-42d4-87f9-7b2375f85876 4870bd37bb6c41756d6ce0a8d2ee5bf2 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.WXS.T C3L-00819 PDA WXS tumor CPT0064090006 CPT0064090006.WholeExome.RP-1303.bam 37010704765 BAM submitted_aligned CPTAC3 dc65945f-cffe-49af-98ab-290a0b4e0e84 be23155dd5bf0c6e1e533bfe995e34e2 {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.WXS.T.hg38 C3L-00819 PDA WXS tumor CPT0064090006_1 74bafef4-c6ea-4079-94d1-272f647dc377_wxs_gdc_realn.bam 84091557788 BAM harmonized CPTAC3 edbc307d-b7a4-4d75-8ee9-0d12df207688 4a0c50fc545926c1f72a5387a4cdf525 {"aliquot_tag": "ALQ_6943b6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00819.WXS.T.hg38 C3L-00819 PDA WXS tumor CPT0064090006 1b8aafd9-2b75-483d-a424-d7137b43fbdd_gdc_realn.bam 50976568926 BAM harmonized CPTAC3 a7f0d7f7-c73c-40f5-a7b5-94a77588088d 934c9687f03792b7b1c6da7aebc9c8bb {"aliquot_tag": "ALQ_ce94b51d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.MethArray.Green.A C3L-00881 PDA Methylation_Array tissue_normal CPT0017130006 203561450054_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7a1b614e-f590-4bb9-a70d-14b4962cc0e7 9cb2a00e1d75c91ef86df08b1575a85a {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00881.MethArray.Green.T C3L-00881 PDA Methylation_Array tumor CPT0017040007 202178770008_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2b71b0bb-1f7d-47ff-a331-192a2675bd30 2dbd9f507e59a0ae3919ee732e65b2b4 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.MethArray.Red.A C3L-00881 PDA Methylation_Array tissue_normal CPT0017130006 203561450054_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 af81c781-bc2d-43ac-8935-b641b66caf26 2f7b3bf328b339820bd0139ced1572a8 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00881.MethArray.Red.T C3L-00881 PDA Methylation_Array tumor CPT0017040007 202178770008_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 b9f60daa-d40a-43ee-a8eb-4062e4ca4625 c748ce8c0b574a421cbb911559e4ab27 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.miRNA-Seq.S34_L002_R1.T C3L-00881 PDA miRNA-Seq tumor CPT0017040010 180924_UNC31-K00269_0154_AHWTMLBBXX_CTAGCT_S34_L002_R1_001.unaln.bam 310191925 BAM S34_L002_R1 submitted_unaligned CPTAC3 cf7231b4-66b9-4278-bef8-03bf63def1cf a5b63a2361f14ba268c1ad4e40ae6c53 {"aliquot_tag": "ALQ_fd51f65c", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.miRNA-Seq.T.hg38 C3L-00881 PDA miRNA-Seq tumor CPT0017040010 226b9c1a-2f7b-49c7-92ff-c7d7b485d135_mirnaseq_gdc_realn.bam 342136754 BAM harmonized CPTAC3 1202a48e-468d-471f-9c95-99318507407d 81aa90063dc452ae9898f55558edeb43 {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.RNA-Seq.chimeric.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.chimeric.gdc_realn.bam 148038164 BAM chimeric harmonized CPTAC3 5e79c1cc-4bed-40ff-8fda-f5badb3f1a3c 21f8bf457c94aa587d9903c2d8a6700e {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.RNA-Seq.genomic.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.genomic.gdc_realn.bam 8446089318 BAM genomic harmonized CPTAC3 43dc629e-c53b-4bf0-b493-468f4289de00 db51b1a54cc23b2c4c68646b3d9c278b {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.RNA-Seq.S12_L003_R1.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3945688574 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 061532ad-114c-49c6-bb96-1c35ce0849e6 3e7ecde932c35908a7d749bfa30c355f {"aliquot_tag": "ALQ_fd51f65c", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.RNA-Seq.S12_L003_R2.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 4400702461 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 0715a7e9-7782-4a70-893f-3b504345a2c7 d62486ff23a7cbafe28dc56ff49e8d5e {"aliquot_tag": "ALQ_fd51f65c", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.RNA-Seq.transcriptome.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.transcriptome.gdc_realn.bam 10274496037 BAM transcriptome harmonized CPTAC3 5520129d-a834-45c6-885a-531b0bd49d57 5b4e00f153763a173b2edb483b5f2db4 {"aliquot_tag": "ALQ_fd51f65c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.Targeted.T C3L-00881 PDA Targeted_Sequencing tumor CPT0017040007_1 CPT0017040007_1.CustomSelection.RP-1303.PDO-18786.bam 5041708878 BAM submitted_aligned CPTAC3 83a7c2e4-431d-425e-b052-c1373209d1bb d856aee3f726585861d057044c8770a5 {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.Targeted.T.hg38 C3L-00881 PDA Targeted_Sequencing tumor CPT0017040007_1 91520624-6be3-4d93-9269-6fce7a30d3c5_targetedsequencing_gdc_realn.bam 7149007745 BAM harmonized CPTAC3 fdcbaa06-a8c3-47da-be7d-28ba600a156b 73cd662d1a76807ca341984a12ed2bd8 {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.WGS.A C3L-00881 PDA WGS tissue_normal CPT0017130006 CPT0017130006.WholeGenome.RP-1303.bam 62384590246 BAM submitted_aligned CPTAC3 c93c682b-d693-4f51-bdfc-3fa5e4453d43 3f787b251f63b3bf7bcefc311059bbf3 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00881.WGS.A.hg38 C3L-00881 PDA WGS tissue_normal CPT0017130006 3ea2fa57-a34d-47b2-bef3-bcfc36caa1ea_wgs_gdc_realn.bam 90320102144 BAM harmonized CPTAC3 7c92c6c9-e04d-42c9-933c-0602a6fda4f4 fdaf1d9bade3f8fe5af5b6b2af7c8190 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00881.WGS.N C3L-00881 PDA WGS blood_normal CPT0015340002 CPT0015340002.WholeGenome.RP-1303.bam 70621132255 BAM submitted_aligned CPTAC3 456bd6d7-0155-4cee-a822-63791fd617e4 9125cef0dd3e15cc3aff1686fa98cf16 {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00881.WGS.N.hg38 C3L-00881 PDA WGS blood_normal CPT0015340002 8d1649d4-c0ae-4223-bf7d-c6e492008dba_gdc_realn.bam 108348965208 BAM harmonized CPTAC3 cf3d2897-c1c8-4965-944d-b091e7563047 1c94acfe66287664ae79c88536a46868 {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00881.WGS.T C3L-00881 PDA WGS tumor CPT0017040007 CPT0017040007.WholeGenome.RP-1303.bam 69072126109 BAM submitted_aligned CPTAC3 fab2adea-079f-4c97-a160-a03f03da9460 d4f28c1e50b5befaed21e93ab1025134 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.WGS.T.hg38 C3L-00881 PDA WGS tumor CPT0017040007 6b6491db-c497-45a7-b98d-f4d43f89435c_gdc_realn.bam 104162893384 BAM harmonized CPTAC3 13af20a3-5702-49be-9374-c78873eedf1c df53b36ea5f0fe5fda46ad9ad9bb379e {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.WXS.A C3L-00881 PDA WXS tissue_normal CPT0017130006 CPT0017130006.WholeExome.RP-1303.bam 25240077061 BAM submitted_aligned CPTAC3 6348ac58-80ff-4697-a0db-51aa65929a51 c3bf3d454adec582c0193baa42f4da23 {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00881.WXS.A.hg38 C3L-00881 PDA WXS tissue_normal CPT0017130006 3ea2fa57-a34d-47b2-bef3-bcfc36caa1ea_wxs_gdc_realn.bam 34268110297 BAM harmonized CPTAC3 508bab91-68e9-401e-9f19-b5c168329b4a bba805c1268d028b8a02ba7f3672c79b {"aliquot_tag": "ALQ_74556d9d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00881.WXS.N C3L-00881 PDA WXS blood_normal CPT0015340002 CPT0015340002.WholeExome.RP-1303.bam 24305811129 BAM submitted_aligned CPTAC3 3cef8db3-6457-4427-b580-cba5f52e46c2 158aea37171740cf4c6a34ceac458e84 {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00881.WXS.N.hg38 C3L-00881 PDA WXS blood_normal CPT0015340002 8d1649d4-c0ae-4223-bf7d-c6e492008dba_gdc_realn.bam 32853733152 BAM harmonized CPTAC3 b0c0a7b2-aa20-4671-8ef1-5c12cbd57e7f 8f4bdaf6f785c334c8847e577455e5ed {"aliquot_tag": "ALQ_1b4fc5b6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00881.WXS.T C3L-00881 PDA WXS tumor CPT0017040007_1 CPT0017040007_1.WholeExome.RP-1303.bam 69347372832 BAM submitted_aligned CPTAC3 d4e52e9c-2fc8-45d3-8644-d3d90924dfd8 a715ca63fef161276560c4523bf90f4b {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.WXS.T C3L-00881 PDA WXS tumor CPT0017040007 CPT0017040007.WholeExome.RP-1303.bam 39243772764 BAM submitted_aligned CPTAC3 e498972d-4191-406e-8174-372d915dec42 025b49b63848cf715ad1e5e6a46296ca {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.WXS.T.hg38 C3L-00881 PDA WXS tumor CPT0017040007_1 91520624-6be3-4d93-9269-6fce7a30d3c5_wxs_gdc_realn.bam 95750084176 BAM harmonized CPTAC3 cb6b8621-e1dc-40f0-85f0-893dc8b58c2c a1dad0e9d94b6ade0936e1264acbc25b {"aliquot_tag": "ALQ_d2079a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00881.WXS.T.hg38 C3L-00881 PDA WXS tumor CPT0017040007 6b6491db-c497-45a7-b98d-f4d43f89435c_gdc_realn.bam 53942362364 BAM harmonized CPTAC3 4bf075b8-1f5f-4305-8429-15c3ea760aa6 92f645883bc275509b2792a7e0301595 {"aliquot_tag": "ALQ_7a2e52be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.MethArray.Green.A C3L-00893 LUAD Methylation_Array tissue_normal CPT0083140009 203027390113_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b44d61f3-1864-486b-ae1c-967b537b6cec 11299e503800511a38688ff15d410ee1 {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.MethArray.Green.T C3L-00893 LUAD Methylation_Array tumor CPT0083100009 202184990069_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c2383c0b-9458-44ab-ae9e-a2e0d6bbd425 404e9093d99dcb9e31094e1cfc10d759 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.MethArray.Red.A C3L-00893 LUAD Methylation_Array tissue_normal CPT0083140009 203027390113_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 e2d50619-fbf6-4966-b505-d40adca18ffb a7299a1b9697b607788c045a77453e1c {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.MethArray.Red.T C3L-00893 LUAD Methylation_Array tumor CPT0083100009 202184990069_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 1c530bf8-83ae-492a-b67e-da86a3979bf4 d627950a03be463bc3036a263268176e {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.miRNA-Seq.A.hg38 C3L-00893 LUAD miRNA-Seq tissue_normal CPT0083140006 e5055dff-627f-4b38-9427-33077e393d61_mirnaseq_gdc_realn.bam 255366313 BAM harmonized CPTAC3 fa7a1580-638e-4e59-b862-ff50fcb55aad 074ab594a28e9855320510e286641cd6 {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.miRNA-Seq.S21_L001_R1.T C3L-00893 LUAD miRNA-Seq tumor CPT0083100006 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L001_R1_001.unaln.bam 216450342 BAM S21_L001_R1 submitted_unaligned CPTAC3 ba88b1ab-a624-476d-b0fd-bac157f3eca9 7949de36ca82347ef0dab06c760b3592 {"aliquot_tag": "ALQ_d8f52875", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.miRNA-Seq.S6_L007_R1.A C3L-00893 LUAD miRNA-Seq tissue_normal CPT0083140006 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L007_R1_001.unaln.bam 231879293 BAM S6_L007_R1 submitted_unaligned CPTAC3 b0e83773-fcb4-4212-9392-33e21d600d33 394be91a3ad27db2037450ed6521e6ea {"aliquot_tag": "ALQ_2d758eb5", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.miRNA-Seq.T.hg38 C3L-00893 LUAD miRNA-Seq tumor CPT0083100006 bc3063e0-2ca9-44e1-858f-13fb74d8dfcf_mirnaseq_gdc_realn.bam 243932470 BAM harmonized CPTAC3 4acd9725-90c1-42e7-b611-c4e3c79e1467 9d660dab6485f5d08544f4657cf8d4d7 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.RNA-Seq.chimeric.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.chimeric.gdc_realn.bam 112918676 BAM chimeric harmonized CPTAC3 77da31b2-8e19-4b61-b5ca-22ec7fa2b8c2 0b0e4c7a7c97eb6ba8c6d6f136f8c722 {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.RNA-Seq.chimeric.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.chimeric.gdc_realn.bam 56390524 BAM chimeric harmonized CPTAC3 7bd87519-87f1-4d89-a89c-f61440512af3 c8ed8a5a17de0871e51f0a28be3e0e85 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.RNA-Seq.genomic.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.genomic.gdc_realn.bam 9009882323 BAM genomic harmonized CPTAC3 df9dea58-a308-4bbf-84d7-593da5713273 b04e3b3376641c1fec692985b318d805 {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.RNA-Seq.genomic.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.genomic.gdc_realn.bam 9907751154 BAM genomic harmonized CPTAC3 3f152507-ee28-442b-a91d-f4a57eab5fc6 e6ac581a9ddfb63aa7031cffb90aa257 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.RNA-Seq.S17_L005_R1.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R1_001.fastq.gz 4401515590 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 48c56ccb-774e-4b7d-92cb-701679ef1560 4bfff3be82c03a71ed3cd697cdd116f7 {"aliquot_tag": "ALQ_2d758eb5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.RNA-Seq.S17_L005_R2.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R2_001.fastq.gz 4891480539 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 9c6b9a75-9890-48b5-9776-5ea84e1bf64d 1e1f56185072a2f2f07600538a387e4e {"aliquot_tag": "ALQ_2d758eb5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.RNA-Seq.S6_L002_R1.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4240500605 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 eb47292d-387e-404a-a89d-c8fe3f247112 f068d342ab97a4fef0f33270de6b2ae0 {"aliquot_tag": "ALQ_d8f52875", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.RNA-Seq.S6_L002_R2.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4628651253 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 0b9baab7-6603-4477-9086-ae8e5deebad8 85678114bb1c49b70eeb85283da49d13 {"aliquot_tag": "ALQ_d8f52875", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.RNA-Seq.transcriptome.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.transcriptome.gdc_realn.bam 11551227790 BAM transcriptome harmonized CPTAC3 94631469-19c9-4c8a-9700-6acab9d910cd 38e56cb5f6d1a29a8daf3ee7770181bd {"aliquot_tag": "ALQ_2d758eb5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.RNA-Seq.transcriptome.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.transcriptome.gdc_realn.bam 9110919598 BAM transcriptome harmonized CPTAC3 130aca1e-f8e8-43ec-b72e-1eed796ebfc1 a50a00ef6190fc7fcebab82e5a4f9de0 {"aliquot_tag": "ALQ_d8f52875", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.WGS.A C3L-00893 LUAD WGS tissue_normal CPT0083140009 CPT0083140009.WholeGenome.RP-1303.bam 61042797031 BAM submitted_aligned CPTAC3 e65030a9-be65-438e-a7f2-3906a97f24df 1475dd98fe6dbd0885f7f76190f50c2f {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.WGS.A.hg38 C3L-00893 LUAD WGS tissue_normal CPT0083140009 f9d3dec0-e554-43a7-9957-c29b88eac369_wgs_gdc_realn.bam 90430430809 BAM harmonized CPTAC3 50c9d84a-d21b-4b4f-8dc8-f54d13fc45ab 8ad1fc4f571acdc818c4b89b0fd0427e {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.WGS.N C3L-00893 LUAD WGS blood_normal CPT0081760002 CPT0081760002.WholeGenome.RP-1303.bam 70874580144 BAM submitted_aligned CPTAC3 84d5e015-a8f1-4306-8ecc-dfb3655afe78 bbf4a66c3d7d36037aeb49f93a3a3257 {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00893.WGS.N.hg38 C3L-00893 LUAD WGS blood_normal CPT0081760002 b686ec16-3532-4c19-83d2-0f7c2a36000b_gdc_realn.bam 107603964270 BAM harmonized CPTAC3 7dd408b2-233e-4bd4-874d-3cec3956d5fe 777e0b3cc7c446cfbbf1a355984bd6f1 {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00893.WGS.T C3L-00893 LUAD WGS tumor CPT0083100009 CPT0083100009.WholeGenome.RP-1303.bam 61282457932 BAM submitted_aligned CPTAC3 02871ad7-333f-48ec-b256-b52f6995f057 b8811d1dd736e96da378ebd5e96c8f51 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.WGS.T.hg38 C3L-00893 LUAD WGS tumor CPT0083100009 0815b3bb-c9ee-4804-9f51-05014a8e5fbe_gdc_realn.bam 91255988938 BAM harmonized CPTAC3 e561b251-3d7a-46f4-9efc-7c7bdaebeabd 9e9c8fc0e52fd495a90b7779af21e4d6 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.WXS.A C3L-00893 LUAD WXS tissue_normal CPT0083140009 CPT0083140009.WholeExome.RP-1303.bam 33156369570 BAM submitted_aligned CPTAC3 4acb3e05-ab4b-4039-82dc-1392c21b6866 962b972e0482224d722d74ca905cb91b {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.WXS.A.hg38 C3L-00893 LUAD WXS tissue_normal CPT0083140009 f9d3dec0-e554-43a7-9957-c29b88eac369_wxs_gdc_realn.bam 44979507116 BAM harmonized CPTAC3 acdc6114-f6a0-4a02-a650-8850d38e22ff 400abcb3aa50b0ae237e384d8e49e99e {"aliquot_tag": "ALQ_bdca9324", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00893.WXS.N C3L-00893 LUAD WXS blood_normal CPT0081760002 CPT0081760002.WholeExome.RP-1303.bam 25386583694 BAM submitted_aligned CPTAC3 06bdc846-d8a2-49dc-a3d6-34119c752384 13abec784279b1043c67bea3add1e8fe {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00893.WXS.N.hg38 C3L-00893 LUAD WXS blood_normal CPT0081760002 b686ec16-3532-4c19-83d2-0f7c2a36000b_gdc_realn.bam 35026634971 BAM harmonized CPTAC3 5f337a1b-c618-421e-86de-2d2d4fc2b689 ddb17870c97fadf364579f17f84208eb {"aliquot_tag": "ALQ_111eebf8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00893.WXS.T C3L-00893 LUAD WXS tumor CPT0083100009 CPT0083100009.WholeExome.RP-1303.bam 35943652683 BAM submitted_aligned CPTAC3 c8470aba-106d-48f3-ad68-ad0d8fb8b98a b9377fc5395aa8ef197719da600303a3 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00893.WXS.T.hg38 C3L-00893 LUAD WXS tumor CPT0083100009 0815b3bb-c9ee-4804-9f51-05014a8e5fbe_gdc_realn.bam 49062295437 BAM harmonized CPTAC3 a0116323-3a81-4e30-8fda-42ef92d0b231 f28e52952a79caab7b126a66958e8538 {"aliquot_tag": "ALQ_484a35e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00898.DUP_132682c9.WGS.N C3L-00898 UCEC WGS blood_normal CPT0172430002_1 CPT0172430002_1.WholeGenome.RP-1303.bam 64392514987 BAM submitted_aligned CPTAC3 6017b281-cd44-48d1-a891-18acf653c42f e79104d93f778cf363f256afb3f02b9c {"aliquot_tag": "DUP_132682c9", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00898.DUP_132682c9.WGS.N.hg38 C3L-00898 UCEC WGS blood_normal CPT0172430002_1 33f58282-84bc-49ef-9122-2f2765e6b392_wgs_gdc_realn.bam 91754531420 BAM harmonized CPTAC3 65a09d23-1b89-492f-a17d-49fcc4365290 e1ef81d859d38a841ea0fb0d9415e051 {"aliquot_tag": "DUP_132682c9", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00898.MethArray.Green.T C3L-00898 UCEC Methylation_Array tumor CPT0172200011 203561450008_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 edcd5bd3-6733-4bd0-844d-7bd54a7a88db c46cc948bad963d998dd9f159cbde71f {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.MethArray.Red.T C3L-00898 UCEC Methylation_Array tumor CPT0172200011 203561450008_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 e1c8ea38-78d3-4e36-aa29-fbc4d0ecd4bd 6d829bc3138787db9ae1b02cf72c1efb {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.miRNA-Seq.S41_L004_R1.T C3L-00898 UCEC miRNA-Seq tumor CPT0172200017 190508_UNC31-K00269_0215_BH7FYKBBXY_GACGAC_S41_L004_R1_001.unaln.bam 159712108 BAM S41_L004_R1 submitted_unaligned CPTAC3 8edb4b1d-6cfd-4d0a-a1bf-02ba972e9834 0523213fdc88d85fb37ae5cfc97a3845 {"aliquot_tag": "ALQ_58515657", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.miRNA-Seq.T.hg38 C3L-00898 UCEC miRNA-Seq tumor CPT0172200017 01d9c7c1-092f-41d9-948a-f8f5851a70b1_mirnaseq_gdc_realn.bam 176218513 BAM harmonized CPTAC3 64346efc-9a69-45a9-a7a7-ca279f41ee66 86db75e9c0f5aa59892c173773f48d1e {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.chimeric.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.chimeric.gdc_realn.bam 50684832 BAM chimeric harmonized CPTAC3 8a3105c3-2c08-4b84-8cef-745066bc6d61 b91f47fcb9209aa11300b6881f03af13 {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.chimeric.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.chimeric.gdc_realn.bam 118439231 BAM chimeric harmonized CPTAC3 c45e866a-6f8a-4eff-8657-7bf7cd1fcbcf cc71d9754f871022cdf897b8c3b2813d {"aliquot_tag": "ALQ_985989e2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.genomic.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.genomic.gdc_realn.bam 10929379469 BAM genomic harmonized CPTAC3 dc959e48-0485-4f7f-8bea-10016dc9134e 67a2de3ebd24ec1f511f6844676a3bae {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.genomic.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.genomic.gdc_realn.bam 5512946461 BAM genomic harmonized CPTAC3 1a22c46d-cda1-4781-a002-73d0f0bd69e2 e79b0b1caa7d93deb38b6ce6d78020a7 {"aliquot_tag": "ALQ_985989e2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.S9_L003_R1.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R1_001.fastq.gz 5187718239 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 86f179d9-4c0f-4695-a5b9-9c1451edb1c1 7cf3b5c36c46219db87107dafce69e4c {"aliquot_tag": "ALQ_58515657", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.S9_L003_R2.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R2_001.fastq.gz 5955392897 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 29ec5877-3a1c-4187-b46b-02690a5bb354 b72dfe0e06ba49ae5260a1ed117d6cc5 {"aliquot_tag": "ALQ_58515657", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.S9_R1.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R1_001.fastq.gz 3035053534 FASTQ S9_R1 submitted_unaligned CPTAC3 da4bde3d-79c5-4b90-a498-41d570e47e04 0832d21c91e851c140a9695052dfb3df {"aliquot_tag": "ALQ_985989e2", "sample": "S9", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.S9_R2.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R2_001.fastq.gz 3108167528 FASTQ S9_R2 submitted_unaligned CPTAC3 6099cd8d-c4e9-4e6d-aeed-eff21a86bc4e 8ec904c537b10427dbea56d4818dbff4 {"aliquot_tag": "ALQ_985989e2", "sample": "S9", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.transcriptome.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.transcriptome.gdc_realn.bam 11430072706 BAM transcriptome harmonized CPTAC3 9b202a97-8e71-4f96-ab4a-27e7f918b66c 5c454c70b1cf9a587979b5a240a82385 {"aliquot_tag": "ALQ_58515657", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.RNA-Seq.transcriptome.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.transcriptome.gdc_realn.bam 2811211711 BAM transcriptome harmonized CPTAC3 a2c55288-9c38-4b8b-9e90-2b54797ae8e0 8cd18d695f6c761374c64e3d1af1b282 {"aliquot_tag": "ALQ_985989e2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.WGS.N C3L-00898 UCEC WGS blood_normal CPT0172430002 CPT0172430002.WholeGenome.RP-1303.bam 21007836542 BAM submitted_aligned CPTAC3 25c292bc-6ae5-4331-90d5-6183ed40082d 6c69a49f68ed7507479825dbb98de57c {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00898.WGS.N.hg38 C3L-00898 UCEC WGS blood_normal CPT0172430002 7e0ba421-e26e-4869-8c26-a4e464b8c5a7_wgs_gdc_realn.bam 28837418601 BAM harmonized CPTAC3 7a0392d8-d5f1-4f26-9589-887b70da45c1 f2d7b48d7845d52f8bc31101033fbb4d {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00898.WGS.T C3L-00898 UCEC WGS tumor CPT0172200011 CPT0172200011.WholeGenome.RP-1303.bam 65983164800 BAM submitted_aligned CPTAC3 75c4b0fe-6834-47c7-88dc-1c6cb29100f9 7f8fbd13cef41bb2bf6573fff8eb3c1c {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.WGS.T.hg38 C3L-00898 UCEC WGS tumor CPT0172200011 35e6ac61-a963-40d1-a82d-adbb38eb860e_wgs_gdc_realn.bam 97769861947 BAM harmonized CPTAC3 5d28b983-e8d3-4307-b06c-4184124fe80e 2f686c3a9928df802ef7ccaf8dc257ce {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.WXS.N C3L-00898 UCEC WXS blood_normal CPT0172430002 CPT0172430002.WholeExome.RP-1303.bam 21007836606 BAM submitted_aligned CPTAC3 752fbca6-d6f9-452a-a57b-0623fe5e284a d2eb4508a48c6bcb7606863135cb6930 {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00898.WXS.N.hg38 C3L-00898 UCEC WXS blood_normal CPT0172430002 7e0ba421-e26e-4869-8c26-a4e464b8c5a7_wxs_gdc_realn.bam 28932109551 BAM harmonized CPTAC3 f7d8faf3-fd07-4b24-96e0-cafed09c54cb 35194204cabfc4d4b38482f47a1af06e {"aliquot_tag": "ALQ_a0d90a54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00898.WXS.T C3L-00898 UCEC WXS tumor CPT0172200011 CPT0172200011.WholeExome.RP-1303.bam 24656420442 BAM submitted_aligned CPTAC3 14e250a0-2ecb-41c9-8676-28d8a7bbc003 9f3cc3f09f4841c4830213d628116ce0 {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00898.WXS.T.hg38 C3L-00898 UCEC WXS tumor CPT0172200011 35e6ac61-a963-40d1-a82d-adbb38eb860e_wxs_gdc_realn.bam 34829592452 BAM harmonized CPTAC3 2f9900ee-7937-42a9-a4f4-7499378c8057 39a98ecb26700587bd8fa2964998b691 {"aliquot_tag": "ALQ_b132f362", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00902.MethArray.Green.A C3L-00902 CCRCC Methylation_Array tissue_normal CPT0063330009 204930640120_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6ecc69d2-a99a-44d0-8674-084802182194 823997404e6363ed4ca0f7007971b48e {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.MethArray.Green.T C3L-00902 CCRCC Methylation_Array tumor CPT0063320009 202178770109_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d66ce126-5bbe-45a7-9dfb-ac16d0bacb99 44c57e031777c8391d0f454a33afc7fb {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.MethArray.Red.A C3L-00902 CCRCC Methylation_Array tissue_normal CPT0063330009 204930640120_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 3d0666f1-1269-475a-a412-d1bf4438fa6b 600954a76c4a426780254a9c5ec9c0c2 {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.MethArray.Red.T C3L-00902 CCRCC Methylation_Array tumor CPT0063320009 202178770109_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 ef4b2888-1b80-4205-9d61-07cbdf6e1a34 2e3ab248731cf68639bcfbf6e496f6b4 {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.miRNA-Seq.A.hg38 C3L-00902 CCRCC miRNA-Seq tissue_normal CPT0063330006 efada245-7f9f-424d-a8b1-043be0220e71_mirnaseq_gdc_realn.bam 214863463 BAM harmonized CPTAC3 bf157aac-7409-44f5-b7a5-b950e938aac4 22eda3aec57ef26dbd7b07575678220c {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.miRNA-Seq.S12_L003_R1.T C3L-00902 CCRCC miRNA-Seq tumor CPT0063320005 181113_UNC31-K00269_0164_AH23NNBBXY_CCAACA_S12_L003_R1_001.unaln.bam 213365537 BAM S12_L003_R1 submitted_unaligned CPTAC3 7d1f3581-5cfa-477e-bc28-cf91954de514 6a284e466eb148acadef54d65a331d81 {"aliquot_tag": "ALQ_637e9996", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.miRNA-Seq.S40_L004_R1.A C3L-00902 CCRCC miRNA-Seq tissue_normal CPT0063330006 181108_UNC31-K00269_0163_BH23TVBBXY_CTCAGA_S40_L004_R1_001.unaln.bam 193130666 BAM S40_L004_R1 submitted_unaligned CPTAC3 0132c717-95e1-4d26-92bb-1250686277e2 79ce8ff4392fa0a2ddf2bbab3598c21d {"aliquot_tag": "ALQ_c717e19c", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.miRNA-Seq.T.hg38 C3L-00902 CCRCC miRNA-Seq tumor CPT0063320005 5399457f-af35-4a63-b286-cb9d6253a0bf_mirnaseq_gdc_realn.bam 240534685 BAM harmonized CPTAC3 36439450-b0ff-4c55-9f66-a62e4250c37b a6e79b2f4074956c37e50a3fde5489e9 {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.RNA-Seq.chimeric.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.chimeric.gdc_realn.bam 64709570 BAM chimeric harmonized CPTAC3 4c365daf-afac-4539-877d-6d8b22cacca8 efd679db9bc2b398350c6b2d4adf39eb {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.RNA-Seq.chimeric.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.chimeric.gdc_realn.bam 38323353 BAM chimeric harmonized CPTAC3 0a9c9b1e-12b4-48e0-acff-dd9d1254c74b db378e7f8ef70ce66a572e5e20fde437 {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.RNA-Seq.genomic.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.genomic.gdc_realn.bam 6423979907 BAM genomic harmonized CPTAC3 d59247dd-094b-4760-8083-74cf9a0960d6 a6ede082cd167412f07ef1f87e34714b {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.RNA-Seq.genomic.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.genomic.gdc_realn.bam 7883566909 BAM genomic harmonized CPTAC3 0ece7793-f954-4fe0-8dfa-bf1876db7d70 c35d6cffeb2240500e3f780c05383e4e {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.RNA-Seq.S3_L001_R1.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3901575779 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 f005f1f9-a95f-4535-8188-f7193cb8ea9a d5d4d3c67970e6b2b27ba3128343b06f {"aliquot_tag": "ALQ_637e9996", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.RNA-Seq.S3_L001_R2.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4198357331 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 8035f7d9-434d-419a-84b8-72f10ef4ef14 48ee3412b295994b74c3e92a0fafab6d {"aliquot_tag": "ALQ_637e9996", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.RNA-Seq.S42_L004_R1.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R1_001.fastq.gz 3385998758 FASTQ S42_L004_R1 submitted_unaligned CPTAC3 03cff90c-7629-42c0-a7e2-177f233d0735 9abcc0b543ae0aabdf7e4c26136a8dc1 {"aliquot_tag": "ALQ_c717e19c", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.RNA-Seq.S42_L004_R2.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R2_001.fastq.gz 3417553994 FASTQ S42_L004_R2 submitted_unaligned CPTAC3 1a425e40-5d58-422a-8b44-3cc975f4153c 10c3ed47effb67a3b97dbc0ae05eac9d {"aliquot_tag": "ALQ_c717e19c", "sample": "S42", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.RNA-Seq.transcriptome.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.transcriptome.gdc_realn.bam 8491249659 BAM transcriptome harmonized CPTAC3 a79b45b9-6b08-4aff-9ae2-2981868de263 f0c502069c61c59ec8408581515777da {"aliquot_tag": "ALQ_c717e19c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.RNA-Seq.transcriptome.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.transcriptome.gdc_realn.bam 10895775979 BAM transcriptome harmonized CPTAC3 bc4cfafc-4a3f-40a1-a69d-5d7f095137ba 71dd46fa58087cc225db0ccecbb7058c {"aliquot_tag": "ALQ_637e9996", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.WGS.A C3L-00902 CCRCC WGS tissue_normal CPT0063330009 CPT0063330009.WholeGenome.RP-1303.bam 63962526544 BAM submitted_aligned CPTAC3 a6f53632-4a1d-4ad7-855e-6e1eaf41b414 8ecb57077bd8991c50386d1ba8a261ef {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.WGS.A.hg38 C3L-00902 CCRCC WGS tissue_normal CPT0063330009 a0f2851f-dfab-44c6-8f10-c08b22b05af9_wgs_gdc_realn.bam 93809506184 BAM harmonized CPTAC3 d81d1664-abb5-440f-9cde-ff2ff5a98070 23b125bb9f947f132a034235d1bfa3b0 {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.WGS.N C3L-00902 CCRCC WGS blood_normal CPT0065240002 CPT0065240002.WholeGenome.RP-1303.bam 77253380927 BAM submitted_aligned CPTAC3 16af8034-7ce4-4c5a-bac0-3a4989e70c3b 3149c0d853808ac5d0326e2c7e143e7f {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00902.WGS.N.hg38 C3L-00902 CCRCC WGS blood_normal CPT0065240002 cc4b8a38-f97c-4cc2-b2d6-4f5d4b135ec3_gdc_realn.bam 114460676121 BAM harmonized CPTAC3 be4390e5-10ce-459b-b1a7-acc51c8997e5 7a7199cc31db1fb99de208d20a7a8ccc {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00902.WGS.T C3L-00902 CCRCC WGS tumor CPT0063320009 CPT0063320009.WholeGenome.RP-1303.bam 85957721659 BAM submitted_aligned CPTAC3 ad89bf79-1f07-41d6-ac99-21f7f271bd16 03577328c4f8bfd2959de2859a634d2b {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.WGS.T.hg38 C3L-00902 CCRCC WGS tumor CPT0063320009 42d54beb-4782-41f3-961e-9e2410b43eb3_gdc_realn.bam 133426690584 BAM harmonized CPTAC3 7f9f3c60-6d35-48dd-9ed0-576ad6ec0ece 2fde89fac5c850e94aa03b0774d6302b {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.WXS.A C3L-00902 CCRCC WXS tissue_normal CPT0063330009 CPT0063330009.WholeExome.RP-1303.bam 29888220864 BAM submitted_aligned CPTAC3 914c7a22-a1a0-4078-9fa2-3c3d58724ab3 99563f49ac514807ca5d3d1d77cade6a {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.WXS.A.hg38 C3L-00902 CCRCC WXS tissue_normal CPT0063330009 a0f2851f-dfab-44c6-8f10-c08b22b05af9_wxs_gdc_realn.bam 40883515092 BAM harmonized CPTAC3 c9a67b61-c022-4ada-b7d2-3e27e71572fc 3a2922f319b041f911e90250f105b7c5 {"aliquot_tag": "ALQ_57a8fc0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00902.WXS.N C3L-00902 CCRCC WXS blood_normal CPT0065240002 CPT0065240002.WholeExome.RP-1303.bam 29902129581 BAM submitted_aligned CPTAC3 fbe85c64-5f4a-4f36-8596-dcec225d4fe2 ee6fda31076d00ec5bfcee38f28582c4 {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00902.WXS.N.hg38 C3L-00902 CCRCC WXS blood_normal CPT0065240002 cc4b8a38-f97c-4cc2-b2d6-4f5d4b135ec3_gdc_realn.bam 41233176755 BAM harmonized CPTAC3 63b8df56-736c-4cc2-93cd-c95776e71305 bcb8d4246f11d9f345ef5ec554ede78c {"aliquot_tag": "ALQ_dad61f0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00902.WXS.T C3L-00902 CCRCC WXS tumor CPT0063320009 CPT0063320009.WholeExome.RP-1303.bam 35571001123 BAM submitted_aligned CPTAC3 7aa45333-b393-427b-a64e-bc77b24f3d7a 4f93e8b6b56a1cc0af9160940ae87714 {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00902.WXS.T.hg38 C3L-00902 CCRCC WXS tumor CPT0063320009 42d54beb-4782-41f3-961e-9e2410b43eb3_gdc_realn.bam 47930609964 BAM harmonized CPTAC3 bd67c388-cbb5-459d-babe-e6a80bd7715c 035816a73dddd79a69cb3572f29b65f3 {"aliquot_tag": "ALQ_6ac8d5bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.MethArray.Green.A C3L-00904 LSCC Methylation_Array tissue_normal CPT0007760006 203219650164_R02C01_Grn.idat 13676235 IDAT Green NA CPTAC3 36c934ec-a0cb-450b-a0e8-85ecf72c357f 5dbbb45a485b9732d4b37129bf80586d {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.MethArray.Green.T C3L-00904 LSCC Methylation_Array tumor CPT0007740009 202176300039_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3f0a8dae-2300-44d0-8935-f2747877c97c e5654fb651e516848c1505c8cde2296f {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.MethArray.Red.A C3L-00904 LSCC Methylation_Array tissue_normal CPT0007760006 203219650164_R02C01_Red.idat 13676235 IDAT Red NA CPTAC3 eaab04f5-d4cb-428b-8cb2-c28b8aedd4a7 6ef44fb5968048f214cea68b58309b1e {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.MethArray.Red.T C3L-00904 LSCC Methylation_Array tumor CPT0007740009 202176300039_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 9feaeb80-d28d-4a33-86c4-aa9b22066e07 c3b11901242a976cf361ef1cfab57a20 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.miRNA-Seq.A.hg38 C3L-00904 LSCC miRNA-Seq tissue_normal CPT0007760009 b2fdfbde-d43d-46fe-99cc-1553b4ca36a5_mirnaseq_gdc_realn.bam 262842936 BAM harmonized CPTAC3 3a79a7e9-71b5-4fb7-b37b-72f004deeca0 1c8c94b19bbfea04d1302e5f4f2f6b59 {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.miRNA-Seq.S19_L005_R1.T C3L-00904 LSCC miRNA-Seq tumor CPT0007740006 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L005_R1_001.unaln.bam 238326843 BAM S19_L005_R1 submitted_unaligned CPTAC3 bf94712e-aa4f-4fd4-8329-fd5c6f9aa5b2 df264131dd48d98677c95961ff8fcfdc {"aliquot_tag": "ALQ_dc86520e", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.miRNA-Seq.S38_L006_R1.A C3L-00904 LSCC miRNA-Seq tissue_normal CPT0007760009 181113_UNC31-K00269_0164_AH23NNBBXY_AGTTCC_S38_L006_R1_001.unaln.bam 235631687 BAM S38_L006_R1 submitted_unaligned CPTAC3 158b29c6-a7d8-44cf-8d8c-b89fde097ffa cc31eaab87c5285490dac0491f74dfd3 {"aliquot_tag": "ALQ_36f91cff", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.miRNA-Seq.T.hg38 C3L-00904 LSCC miRNA-Seq tumor CPT0007740006 fc2abf5c-a300-4149-bfb8-bc4f6bc83f83_mirnaseq_gdc_realn.bam 256755826 BAM harmonized CPTAC3 b74b5168-6e97-4520-b9e7-c9564cbe6e54 4ed98bb7906e236e8a1f229f9e4086a8 {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.RNA-Seq.chimeric.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.chimeric.gdc_realn.bam 33820208 BAM chimeric harmonized CPTAC3 6ee74ee0-1251-4707-b58c-79ab783b547d 63ee042a93904e7322eaaa2a3a3af773 {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.RNA-Seq.chimeric.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.chimeric.gdc_realn.bam 41884459 BAM chimeric harmonized CPTAC3 b852209f-9607-42ab-b926-7f94f18feee2 a767502348120eba3de0357022d6172e {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.RNA-Seq.genomic.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.genomic.gdc_realn.bam 9099740154 BAM genomic harmonized CPTAC3 688e61b5-032e-45f4-af46-e97d1d6db861 35448fd9e8662be0ca4d7bc112426a31 {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.RNA-Seq.genomic.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.genomic.gdc_realn.bam 6120898859 BAM genomic harmonized CPTAC3 9051f596-46ea-42a5-a182-8503da184523 ca36dc5960183b12db02ff15a1bafebd {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.RNA-Seq.S12_L003_R1.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R1_001.fastq.gz 2727114433 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 9dd16445-d61f-49cf-b3e9-4cb91784328d 8b0d04ea27a07635ef7bc23caaac9e73 {"aliquot_tag": "ALQ_dc86520e", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.RNA-Seq.S12_L003_R2.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R2_001.fastq.gz 2940186419 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 be15c178-1d81-4dc3-b11e-e8864691aac8 184492704686ab8c9c8c4bd0d6e06354 {"aliquot_tag": "ALQ_dc86520e", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.RNA-Seq.S14_L004_R1.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 3861950975 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 f9a108ec-99ab-458e-9584-4dbc4b407ef6 fcbb0db89c18c94cbea3410b15b97c4c {"aliquot_tag": "ALQ_36f91cff", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.RNA-Seq.S14_L004_R2.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4211599234 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 31cf3e68-7d16-4aa7-831e-b90a31a3c991 e99cccc9fa9fddcfe7e928a298e7e841 {"aliquot_tag": "ALQ_36f91cff", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.RNA-Seq.transcriptome.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.transcriptome.gdc_realn.bam 10547513577 BAM transcriptome harmonized CPTAC3 26dbff98-9da7-4751-915a-16ec723a5a8f 169a6e5404c2de9377916444f0c6768b {"aliquot_tag": "ALQ_36f91cff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.RNA-Seq.transcriptome.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.transcriptome.gdc_realn.bam 7147040902 BAM transcriptome harmonized CPTAC3 1355f188-f019-4347-812b-c6c18ce1b0e5 8daf2a6d63da284c2799796819d7cf5d {"aliquot_tag": "ALQ_dc86520e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.WGS.A C3L-00904 LSCC WGS tissue_normal CPT0007760006 CPT0007760006.WholeGenome.RP-1303.bam 53190749844 BAM submitted_aligned CPTAC3 fffe6c73-7d0b-4600-9a90-2e92ffe2653e 0161e445308c13df6a5e37749ff784dd {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.WGS.A.hg38 C3L-00904 LSCC WGS tissue_normal CPT0007760006 32e37138-84ae-40e3-9533-7d9be547c627_wgs_gdc_realn.bam 77587305561 BAM harmonized CPTAC3 c2be35bc-1af5-4fd0-933f-22f152880ca8 69654f6e65acfa9acbf5c292cb3c7050 {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.WGS.N C3L-00904 LSCC WGS blood_normal CPT0002920002 CPT0002920002.WholeGenome.RP-1303.bam 78100597618 BAM submitted_aligned CPTAC3 28f4e495-4cc8-4e51-b981-482aa8b852b7 e064ff6c5a1512f2abcb1325b2d3df0d {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00904.WGS.N.hg38 C3L-00904 LSCC WGS blood_normal CPT0002920002 a8847ec8-8718-435a-a1df-77690c4a60f1_gdc_realn.bam 116634762187 BAM harmonized CPTAC3 321d197d-86f3-4d3a-8434-2b621da14ed4 a9b3b1e780b818c04ce0f3f65c52fc93 {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00904.WGS.T C3L-00904 LSCC WGS tumor CPT0007740009 CPT0007740009.WholeGenome.RP-1303.bam 77689478636 BAM submitted_aligned CPTAC3 8c430265-6f06-4395-83f8-62e5026185f5 0eb5dd8c7eb16a61949c61d294cef935 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.WGS.T.hg38 C3L-00904 LSCC WGS tumor CPT0007740009 c643b5b9-f774-44bb-bb8c-a6ab9d1e0d29_gdc_realn.bam 116181554915 BAM harmonized CPTAC3 8cfd2c1c-4306-45b7-b393-c542321edf01 f803561c538cd0c27fd9bdfef3df037b {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.WXS.A C3L-00904 LSCC WXS tissue_normal CPT0007760006 CPT0007760006.WholeExome.RP-1303.bam 23276730135 BAM submitted_aligned CPTAC3 5a4ee34d-d226-4ce0-9709-951b14e55b9d c7416e99e065e297a7f8caa6fd3c87f1 {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.WXS.A.hg38 C3L-00904 LSCC WXS tissue_normal CPT0007760006 32e37138-84ae-40e3-9533-7d9be547c627_wxs_gdc_realn.bam 31242822161 BAM harmonized CPTAC3 d7c71375-e58a-4539-b9a3-b4adc306e9ad e0bec7ab994833ef57167dc869c85159 {"aliquot_tag": "ALQ_a646016e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00904.WXS.N C3L-00904 LSCC WXS blood_normal CPT0002920002 CPT0002920002.WholeExome.RP-1303.bam 38625652500 BAM submitted_aligned CPTAC3 9db4423c-9921-4c09-b851-e45b82d8e942 d5faf4fd5bc4e162f414ffc0689b5683 {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00904.WXS.N.hg38 C3L-00904 LSCC WXS blood_normal CPT0002920002 a8847ec8-8718-435a-a1df-77690c4a60f1_gdc_realn.bam 52673035957 BAM harmonized CPTAC3 cb1142be-7646-47db-a541-3f6d19484c41 eec634d85483e1f702e664a7ee4ec242 {"aliquot_tag": "ALQ_3c992d60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00904.WXS.T C3L-00904 LSCC WXS tumor CPT0007740009 CPT0007740009.WholeExome.RP-1303.bam 38675301772 BAM submitted_aligned CPTAC3 faa875dd-7949-46ac-a2de-3afebfcad054 873ae42064900a529ba3d9ccaac202b2 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00904.WXS.T.hg38 C3L-00904 LSCC WXS tumor CPT0007740009 c643b5b9-f774-44bb-bb8c-a6ab9d1e0d29_gdc_realn.bam 52926343476 BAM harmonized CPTAC3 cc52b89d-2749-4217-b120-7dfb692d90fd 19a0aeda8c491fd57552c06bab5cf2c4 {"aliquot_tag": "ALQ_4c394f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.MethArray.Green.T C3L-00905 UCEC Methylation_Array tumor CPT0063380009 202184900127_R07C01_Grn.idat 13676247 IDAT Green NA CPTAC3 1a504680-547d-4cea-b104-424eb540a8ee b4c29d864c164c13669bf270a06f2fcd {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.MethArray.Red.T C3L-00905 UCEC Methylation_Array tumor CPT0063380009 202184900127_R07C01_Red.idat 13676247 IDAT Red NA CPTAC3 c86ccc49-b9da-47da-827a-3f96e1d04209 c51fab3dce53fdabe04e282e5fe31f5a {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.miRNA-Seq.S15_L003_R1.T C3L-00905 UCEC miRNA-Seq tumor CPT0063380006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCGTCC_S15_L003_R1_001.unaln.bam 176942130 BAM S15_L003_R1 submitted_unaligned CPTAC3 2c13ec78-1664-4361-80c4-c5ab987b3fc3 1e33be868fc5f8db2a7eb6d09bcdb854 {"aliquot_tag": "ALQ_b0c7d08d", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.miRNA-Seq.T.hg38 C3L-00905 UCEC miRNA-Seq tumor CPT0063380006 e3a9cb39-7876-43e0-a669-66479a9c979b_mirnaseq_gdc_realn.bam 192164908 BAM harmonized CPTAC3 25b5df8f-16ae-40ab-ade1-d6f5faf037b8 d4f7e13b575f09f25b371b2356522cfc {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.chimeric.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.chimeric.gdc_realn.bam 35656142 BAM chimeric harmonized CPTAC3 ddea5f5b-d102-4d1e-88ae-b3bcd13e718d 13faa286d880d2661a29be6a75dca02e {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.chimeric.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.chimeric.gdc_realn.bam 233099082 BAM chimeric harmonized CPTAC3 a200218e-a911-41eb-ada8-40ccb25fcabe 0e1f0d84d95c1de847c3e2bf784a5480 {"aliquot_tag": "ALQ_578a4a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.genomic.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.genomic.gdc_realn.bam 9415295543 BAM genomic harmonized CPTAC3 9d918c73-afd0-4ed6-8545-9803bd9cc2da 05386e284f1cf2b823568ba2fbf67b53 {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.genomic.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.genomic.gdc_realn.bam 12312818817 BAM genomic harmonized CPTAC3 5118e854-6106-40d1-ba51-6707c87a2ff2 d13832c01bde08aff4f9c35d8b85aa62 {"aliquot_tag": "ALQ_578a4a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.S2_L001_R1.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4353715474 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 f8d21c9d-a65c-4aba-9cae-71eadbe611ff 3b04d0003a8e2d2e9c6cd16880d6a1d9 {"aliquot_tag": "ALQ_b0c7d08d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.S2_L001_R2.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4698026762 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 b84dc177-6c03-40d2-ae16-83bb9e772349 7cca988f91f0effbc11250c8ea6d5115 {"aliquot_tag": "ALQ_b0c7d08d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.S56_R1.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R1_001.fastq.gz 7819556652 FASTQ S56_R1 submitted_unaligned CPTAC3 5a30bf74-cc23-4321-9d8a-ae2c550cda4c e98dd564429aceb5e8b0d5c46bc4e018 {"aliquot_tag": "ALQ_578a4a7e", "sample": "S56", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.S56_R2.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R2_001.fastq.gz 8127817898 FASTQ S56_R2 submitted_unaligned CPTAC3 da43598b-38df-4f50-815b-de5cea1e0172 23b5829f23c3c611f0a83a842580d28d {"aliquot_tag": "ALQ_578a4a7e", "sample": "S56", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.transcriptome.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.transcriptome.gdc_realn.bam 12317201178 BAM transcriptome harmonized CPTAC3 1acfadcb-28d3-4a48-b3c5-f86abc5ecf5f b33cb13405ce54f72d6c540254d6f9ac {"aliquot_tag": "ALQ_b0c7d08d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.RNA-Seq.transcriptome.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.transcriptome.gdc_realn.bam 7700146006 BAM transcriptome harmonized CPTAC3 3f8f94c8-ca1b-4a92-b08b-ded6169dfc1e 63b8493a2ba304f7cc2f01c75818555e {"aliquot_tag": "ALQ_578a4a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.WGS.N C3L-00905 UCEC WGS blood_normal CPT0065250002 CPT0065250002.WholeGenome.RP-1303.bam 85081215327 BAM submitted_aligned CPTAC3 f804af1b-448e-4337-8ede-071f7c20dec1 d0c1cc0f3d050e2e9704d811a167ec2d {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00905.WGS.N.hg38 C3L-00905 UCEC WGS blood_normal CPT0065250002 609e24b7-042b-4088-a100-b55d5f0beaf5_gdc_realn.bam 130867023487 BAM harmonized CPTAC3 8db9ff3a-558c-4fdb-88e7-310c92350b3b b1dae9b03045d133a510fb724ec6e5c5 {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00905.WGS.T C3L-00905 UCEC WGS tumor CPT0063380009 CPT0063380009.WholeGenome.RP-1303.bam 77862105677 BAM submitted_aligned CPTAC3 b6580310-d583-46dc-ae4a-ad324d67abd7 d1274c00f9b2aca0248bb89479b9321e {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.WGS.T.hg38 C3L-00905 UCEC WGS tumor CPT0063380009 d678d221-9dbd-4e9f-8f94-9aaef5f7092f_gdc_realn.bam 120086520020 BAM harmonized CPTAC3 239efdc5-6656-41bd-acd4-c6ba3c99c4d0 546839f1f93050af7021508f3ba08563 {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.WXS.N C3L-00905 UCEC WXS blood_normal CPT0065250002 CPT0065250002.WholeExome.RP-1303.bam 37526675952 BAM submitted_aligned CPTAC3 bdecef95-6b45-4bb7-999b-c7685bce7a95 e6aad76a0dfe6e3467fe3a7b3d4e4300 {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00905.WXS.N.hg38 C3L-00905 UCEC WXS blood_normal CPT0065250002 609e24b7-042b-4088-a100-b55d5f0beaf5_gdc_realn.bam 50418178617 BAM harmonized CPTAC3 faace15d-2171-48b5-9abb-8eb89ca66633 509c443104258cf827f64332d0203f99 {"aliquot_tag": "ALQ_e7b636ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00905.WXS.T C3L-00905 UCEC WXS tumor CPT0063380009 CPT0063380009.WholeExome.RP-1303.bam 34460884251 BAM submitted_aligned CPTAC3 4a895a1d-f59c-4fd0-a759-929c8581c5dc e34cd1b2f1ddd589619a6b655e11516f {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00905.WXS.T.hg38 C3L-00905 UCEC WXS tumor CPT0063380009 d678d221-9dbd-4e9f-8f94-9aaef5f7092f_gdc_realn.bam 47057271603 BAM harmonized CPTAC3 e6585c40-504d-419a-b31d-bacbfadc10da 1ad1602013faea8f8556211d8d200d34 {"aliquot_tag": "ALQ_2078cd1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_4800c7b3.miRNA-Seq.S46_L005_R1.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064390006 200526_UNC32-K00270_0248_BHH7WFBBXY_TGACCA_S46_L005_R1_001.unaln.bam 210415246 BAM S46_L005_R1 submitted_unaligned CPTAC3 8e67a76b-8ab6-42e9-aa05-80c273d239fb 3553fa22fb259e75de8318f63fa8120e {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_4800c7b3.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064390006 35f9aacb-ffa9-4ec3-bbd7-e4e7f6087b73_mirnaseq_gdc_realn.bam 234059849 BAM harmonized CPTAC3 37d610e4-68c9-472b-9691-6a13bf1f6fe5 4baf645764070d0aaa2c1f3b7c7ab8eb {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_4800c7b3.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.chimeric.gdc_realn.bam 159872582 BAM chimeric harmonized CPTAC3 a58fbc89-5abc-4991-82ae-55904834ab94 c0cc72f57cf391ce402b306a8c6dd3f4 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_4800c7b3.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.genomic.gdc_realn.bam 6564599358 BAM genomic harmonized CPTAC3 bfb7339d-aa5c-4936-a8fa-92050d326e89 8b12f64e38a24dee6bd5c4f89c3a4ed4 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_4800c7b3.RNA-Seq.S28_L004_R1.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R1_001.fastq.gz 2953592785 FASTQ S28_L004_R1 submitted_unaligned CPTAC3 355dd7a7-51a6-45e8-994d-ab93fc4e99d7 606116e17c7f259a78022e253870d868 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_4800c7b3.RNA-Seq.S28_L004_R2.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R2_001.fastq.gz 3482612086 FASTQ S28_L004_R2 submitted_unaligned CPTAC3 d14ba0d0-db53-4b1a-8b2a-08d713dec9b2 455b041d2dfbd31acfd041986f77e413 {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_4800c7b3.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.transcriptome.gdc_realn.bam 8188327581 BAM transcriptome harmonized CPTAC3 10edba28-0451-466a-bf85-9555f0f07efb 3d2eadccb52007ebd723f6745fe7ca8e {"aliquot_tag": "DUP_4800c7b3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_7560ee03.miRNA-Seq.S47_L005_R1.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064380006 200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L005_R1_001.unaln.bam 191519127 BAM S47_L005_R1 submitted_unaligned CPTAC3 9d07b5de-5ebb-4127-9dd5-9a8c7fc5df1c f5a6c5458a79c6d903f762380add573c {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_7560ee03.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064380006 9101a748-ac4f-4aa3-8abd-c6e4a3691619_mirnaseq_gdc_realn.bam 213798651 BAM harmonized CPTAC3 9816537d-3f5a-43a7-8e43-059f4f68d35a 1f9e4daf18948106d67bb08388d1b572 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_7560ee03.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.chimeric.gdc_realn.bam 94438029 BAM chimeric harmonized CPTAC3 52c36b7a-c3c9-489a-862d-e85c6482a31c 7819bf41e81720f650eb6308ad91e4b0 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_7560ee03.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.genomic.gdc_realn.bam 8535126053 BAM genomic harmonized CPTAC3 cb9423d8-22e7-423c-ab08-0d13d05f4507 0f488a4f07905e84f0c86d2350b9b775 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_7560ee03.RNA-Seq.S30_L004_R1.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R1_001.fastq.gz 3901703095 FASTQ S30_L004_R1 submitted_unaligned CPTAC3 26820d22-be01-42dd-a1a1-748d7932a7a8 caba787a84a06364298a07eda2b886c9 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_7560ee03.RNA-Seq.S30_L004_R2.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R2_001.fastq.gz 4614033820 FASTQ S30_L004_R2 submitted_unaligned CPTAC3 bdea7f13-83db-4fc4-93ff-f770fd4f0859 5d3ee7df4f3514b0bd4d281beb3ed2f7 {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_7560ee03.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.transcriptome.gdc_realn.bam 11884504071 BAM transcriptome harmonized CPTAC3 a2ea7b64-7cb5-4a08-8b58-666f8bf1170b 1b07c9bf516a50e902194a35043a444b {"aliquot_tag": "DUP_7560ee03", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_d8bfda22.MethArray.Green.T C3L-00907 CCRCC Methylation_Array tumor CPT0064390009 204367460011_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6da1c805-b648-4d6d-881c-f05953da1760 899bd7010562363fd8d1b0828ffa20ad {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_d8bfda22.MethArray.Red.T C3L-00907 CCRCC Methylation_Array tumor CPT0064390009 204367460011_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 82484ee2-aadf-4c2c-8b92-5cb15a76c2c3 8e6deba29866e52e23ec0b7dbd0e1bbd {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_d8bfda22.WGS.T C3L-00907 CCRCC WGS tumor CPT0064390009 CPT0064390009.WholeGenome.RP-2158.bam 30013877702 BAM submitted_aligned CPTAC3 430cbc2f-d139-40e5-bc51-46ff4d499090 93cb0e2665edbadffbf51c093547b301 {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_d8bfda22.WGS.T.hg38 C3L-00907 CCRCC WGS tumor CPT0064390009 4c8a309f-acb1-4487-a2eb-69dcca1c3f3c_wgs_gdc_realn.bam 89345289973 BAM harmonized CPTAC3 90fc70a4-9ddb-4be1-b8a9-16c673ad8617 378c6cf9c7e105928022b430bea5b18b {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_d8bfda22.WXS.T C3L-00907 CCRCC WXS tumor CPT0064390009 CPT0064390009.WholeExome.RP-1303.bam 22086387660 BAM submitted_aligned CPTAC3 91890fd2-a52c-4107-a505-28abfc524cf7 33af2da0ae0511fc3afc67c438a2a9ad {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_d8bfda22.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064390009 4c8a309f-acb1-4487-a2eb-69dcca1c3f3c_wxs_gdc_realn.bam 30991151835 BAM harmonized CPTAC3 02cd1e72-e1ca-4196-8117-cb27e7e95a43 52432e3f77e3f70cdf1ed9ee126c3f87 {"aliquot_tag": "DUP_d8bfda22", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_e5dff392.MethArray.Green.T C3L-00907 CCRCC Methylation_Array tumor CPT0064380009 204367490066_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e456fd25-c0ca-4a73-8a29-eafddc945ced 8db358b6ce23ca2c9c17c40aa4816693 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_e5dff392.MethArray.Red.T C3L-00907 CCRCC Methylation_Array tumor CPT0064380009 204367490066_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 382461a5-fb01-4644-8a02-154378e5224b 182712e63f7039c4b2dd9ae8340c95b1 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_e5dff392.WGS.T C3L-00907 CCRCC WGS tumor CPT0064380009 CPT0064380009.WholeGenome.RP-2158.bam 20601813023 BAM submitted_aligned CPTAC3 e04dd5ed-b752-451f-9d0c-9538c7075329 9f6286f527a649986053aca9ac444ce4 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_e5dff392.WGS.T.hg38 C3L-00907 CCRCC WGS tumor CPT0064380009 3bd9e2f6-ff3d-4e3a-86f3-9f790485e5b3_wgs_gdc_realn.bam 61226087823 BAM harmonized CPTAC3 36247662-605e-41a6-a11c-c21d65b9810f 16dc0aa7b85b47c03a8d7be4b84c6fdd {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_e5dff392.WXS.T C3L-00907 CCRCC WXS tumor CPT0064380009 CPT0064380009.WholeExome.RP-1303.bam 22329579570 BAM submitted_aligned CPTAC3 5e991954-3604-478b-aa3a-da2587b3a2e4 1d3b8b409fb421f1cd5bac210dc1d857 {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.DUP_e5dff392.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064380009 3bd9e2f6-ff3d-4e3a-86f3-9f790485e5b3_wxs_gdc_realn.bam 30703740535 BAM harmonized CPTAC3 279b7249-0824-4011-875b-d68eea9bd141 1031e41375d1bdea124b273b2d425b4e {"aliquot_tag": "DUP_e5dff392", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.MethArray.Green.A C3L-00907 CCRCC Methylation_Array tissue_normal CPT0064400009 203027380024_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 66404e28-1762-4b50-b93f-2cffeb05d3d0 16ad1934b92f02f20d339077dcf23de8 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.MethArray.Green.T C3L-00907 CCRCC Methylation_Array tumor CPT0064370006 202184990057_R07C01_Grn.idat 13676220 IDAT Green NA CPTAC3 2be4b73f-7c38-4e75-a90f-a28a47706fde ea8b4daf384a2e1b7215e169a211566a {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.MethArray.Red.A C3L-00907 CCRCC Methylation_Array tissue_normal CPT0064400009 203027380024_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 11973091-3dbe-40cc-bb3f-2ffa23d1316e f84eb2b9483169660cf02d00292a08d6 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.MethArray.Red.T C3L-00907 CCRCC Methylation_Array tumor CPT0064370006 202184990057_R07C01_Red.idat 13676220 IDAT Red NA CPTAC3 ca5bb86d-a65f-4dc8-b9e6-a26b23b189a5 50e26c02f7fac1eaa886f323b2ff0903 {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.miRNA-Seq.A.hg38 C3L-00907 CCRCC miRNA-Seq tissue_normal CPT0064400006 7d2fa96f-8c77-41ea-b87e-18c9fdee1e18_mirnaseq_gdc_realn.bam 263829993 BAM harmonized CPTAC3 3894e123-8f6f-4382-8ec0-6c2bc560f2ae 579faae718991c927a77667563c64a08 {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.miRNA-Seq.S23_L001_R1.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064370009 181113_UNC31-K00269_0164_AH23NNBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 198149818 BAM S23_L001_R1 submitted_unaligned CPTAC3 ddfbd273-8d32-4cbb-b0a4-29fc4dc150d7 3e0f4f8d69ed59753e01527bae860798 {"aliquot_tag": "ALQ_678f6443", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.miRNA-Seq.S6_L003_R1.A C3L-00907 CCRCC miRNA-Seq tissue_normal CPT0064400006 181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L003_R1_001.unaln.bam 235584971 BAM S6_L003_R1 submitted_unaligned CPTAC3 1fe3ad17-7b95-4b88-900f-cbfe636ef4f2 623ff7c7e53b0c0cc08030ef3d143a9d {"aliquot_tag": "ALQ_5815957a", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064370009 925ef109-71f3-481f-9ced-2381347c7acf_mirnaseq_gdc_realn.bam 217482390 BAM harmonized CPTAC3 e46a663f-66ee-4999-b00b-c6a80637e657 0d002596b826807586f23aa3bea8d19e {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.RNA-Seq.chimeric.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.chimeric.gdc_realn.bam 68201596 BAM chimeric harmonized CPTAC3 ac6952a8-6c86-4b80-ab6f-02bc718abaaa c34695384e85e0c473d16f5c56c437be {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.chimeric.gdc_realn.bam 28869846 BAM chimeric harmonized CPTAC3 f525d3db-5657-4c2d-a54f-1f1938005a71 51e9bcf572a9d460937c46a72fa082f8 {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.RNA-Seq.genomic.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.genomic.gdc_realn.bam 7977871036 BAM genomic harmonized CPTAC3 10ca97a7-9252-45ec-b052-b485d660a8a5 bc83a72903f38f9e811542a63df5af86 {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.genomic.gdc_realn.bam 7938993537 BAM genomic harmonized CPTAC3 7a09c5b9-3e7b-4ecc-80c2-0ed177908e7a 71fe80d94bf973c356a87ba1499724b8 {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.RNA-Seq.S19_L005_R1.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R1_001.fastq.gz 3806635927 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 feff905e-00f6-45d8-a067-6d887961203d ab9709335139fcdb2bf7bb6c1523b380 {"aliquot_tag": "ALQ_678f6443", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.RNA-Seq.S19_L005_R2.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R2_001.fastq.gz 4134224462 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 1ba5d8a7-958c-40af-958c-4d7c070debe4 00b0f359b42308f1f4fe23b44abc8dd3 {"aliquot_tag": "ALQ_678f6443", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.RNA-Seq.S22_L006_R1.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4116509305 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 91e9deed-abfa-4e77-b5d0-771da7e6042c 4ab19a6ec5ecb68b7ddb4310aa5dfd64 {"aliquot_tag": "ALQ_5815957a", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.RNA-Seq.S22_L006_R2.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4550943116 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 fb84b43b-fbda-42e2-a32a-9f031db8feff 3405b30fc9b9d748d43adfef6c94adfc {"aliquot_tag": "ALQ_5815957a", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.RNA-Seq.transcriptome.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.transcriptome.gdc_realn.bam 10693311581 BAM transcriptome harmonized CPTAC3 29b23fdc-51a9-49b0-a335-613a8d46b86d 90cc1ed9c4b8df53d0ca48505d1f0f62 {"aliquot_tag": "ALQ_5815957a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.transcriptome.gdc_realn.bam 10885847771 BAM transcriptome harmonized CPTAC3 ef975ef0-8011-4c55-bc34-97f88b4a5248 dcdc1474825ef9bb40a9ed9f2a3d3680 {"aliquot_tag": "ALQ_678f6443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.WGS.A C3L-00907 CCRCC WGS tissue_normal CPT0064400009 CPT0064400009.WholeGenome.RP-1303.bam 50519355214 BAM submitted_aligned CPTAC3 fa85506d-33dc-4156-9e80-46997b4d3de7 e91cbd580f8b719ee439b2da79bc870c {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.WGS.A.hg38 C3L-00907 CCRCC WGS tissue_normal CPT0064400009 bba5ddc0-4f69-4f42-a1c0-e4b9d9e6d3a8_wgs_gdc_realn.bam 73494321854 BAM harmonized CPTAC3 09e37da2-947b-4d6f-a750-189425191c8d e6c0dd4405f12fabcc912b55af3bc9de {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.WGS.N C3L-00907 CCRCC WGS blood_normal CPT0065420002 CPT0065420002.WholeGenome.RP-1303.bam 82098221617 BAM submitted_aligned CPTAC3 85f07b61-30ea-4a70-8c3e-69054183ffd0 01e6a9a3600401d607c308a4f57575d6 {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00907.WGS.N.hg38 C3L-00907 CCRCC WGS blood_normal CPT0065420002 9e37fe3b-588b-4e4b-87fb-8e427490226e_gdc_realn.bam 122362789392 BAM harmonized CPTAC3 46e1706a-3c72-49ff-b113-ee5dbd3d54cd 98436f094b55f8dc1636ee2011f55926 {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00907.WGS.T C3L-00907 CCRCC WGS tumor CPT0064370006 CPT0064370006.WholeGenome.RP-1303.bam 86634452438 BAM submitted_aligned CPTAC3 41a3173d-a77e-4d81-a19c-a1551badf77c 8072a06e5c4b280e9f478b1275bc1b4b {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.WGS.T.hg38 C3L-00907 CCRCC WGS tumor CPT0064370006 f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 133378094319 BAM harmonized CPTAC3 830945b1-40a1-4310-8c6a-d79dbbfb76d3 57f9311ddfc4c7af4815acaac4a644dc {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.WXS.A C3L-00907 CCRCC WXS tissue_normal CPT0064400009 CPT0064400009.WholeExome.RP-1303.bam 27602413638 BAM submitted_aligned CPTAC3 4b79ac8e-7a0a-4561-ba2c-0433d41ae2b9 03edcca0b00a4ba53fe0d590b3488ee0 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.WXS.A.hg38 C3L-00907 CCRCC WXS tissue_normal CPT0064400009 bba5ddc0-4f69-4f42-a1c0-e4b9d9e6d3a8_wxs_gdc_realn.bam 37587035086 BAM harmonized CPTAC3 135097d2-ba2f-4501-9f64-455c96ce7002 92de3954f79f6fed9471bbf621577926 {"aliquot_tag": "ALQ_c8aa88eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00907.WXS.N C3L-00907 CCRCC WXS blood_normal CPT0065420002 CPT0065420002.WholeExome.RP-1303.bam 31957245596 BAM submitted_aligned CPTAC3 98078c72-93d6-49b1-9d19-93ed16ee1393 166f4b6cc556066519811d7190094c61 {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00907.WXS.N.hg38 C3L-00907 CCRCC WXS blood_normal CPT0065420002 9e37fe3b-588b-4e4b-87fb-8e427490226e_gdc_realn.bam 43540660835 BAM harmonized CPTAC3 fd93766a-9f13-4593-8ef2-48d84271719c 6f55b9a84c93e42b9aca3f16f324fefe {"aliquot_tag": "ALQ_83cf09b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00907.WXS.T C3L-00907 CCRCC WXS tumor CPT0064370006 CPT0064370006.WholeExome.RP-1303.bam 30791920405 BAM submitted_aligned CPTAC3 3c893cd0-8fcc-4193-8720-c43a53a4ac19 ea9ef374baf0ae54946dfe1b93719dc5 {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00907.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064370006 f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 42988709588 BAM harmonized CPTAC3 5b8f478a-209f-47bc-893b-5d7302cd4f79 73e343702883bd9a89a67d572341d3a7 {"aliquot_tag": "ALQ_f73079d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.MethArray.Green.A C3L-00908 CCRCC Methylation_Array tissue_normal CPT0086370009 204930640120_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f014e7c0-4c1b-4617-abe5-91ded63ed4bc e8759bfcc75666c3142c4c5f0cab1ecb {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086360009 202184900140_R04C01_Grn.idat 13676261 IDAT Green NA CPTAC3 098f45d0-13aa-4ca2-bffb-34c3a6cf0d5c 422f67f93dce0336fc874f8268f16de0 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.MethArray.Red.A C3L-00908 CCRCC Methylation_Array tissue_normal CPT0086370009 204930640120_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 a850babf-9a42-4309-9233-7b545bf65142 22dc71b942b4c69cbd329eeddaebca01 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086360009 202184900140_R04C01_Red.idat 13676261 IDAT Red NA CPTAC3 b3e7012a-66b0-4023-a59d-a89ceb1b3118 b9cacbd7ef67594fc80421d8902b71de {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.miRNA-Seq.A.hg38 C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 173c0d6a-bc67-4a72-b6d3-b2a411e24785_mirnaseq_gdc_realn.bam 243270795 BAM harmonized CPTAC3 7e41687b-c9d2-451f-bd6c-473cc0c58f3d a33bf2470cb149afc4d3515a6ce83eff {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.miRNA-Seq.S13_L005_R1.A C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L005_R1_001.unaln.bam 213873054 BAM S13_L005_R1 submitted_unaligned CPTAC3 83df97b4-0757-4d5f-8698-cb7ea7a5feaf 64a1b3e4b04f3c60c019b96eb4768514 {"aliquot_tag": "ALQ_75257ac9", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.REP_9f5a3438.miRNA-Seq.S10_L005_R1.T C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L005_R1_001.unaln.bam 159592216 BAM S10_L005_R1 submitted_unaligned CPTAC3 c7baf5bf-ac47-4c48-8613-d1740624348a 918420f6333943bca22ee271d18db2a3 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_9f5a3438.miRNA-Seq.T.hg38 C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 33c921ea-b743-4d32-9c56-875de6028c71_mirnaseq_gdc_realn.bam 179925405 BAM harmonized CPTAC3 35b76590-bc93-4d51-86cc-58ea39c678b1 d9bb5104e97c611b1218318f1e27ea16 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_9f5a3438.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.chimeric.gdc_realn.bam 45129040 BAM chimeric harmonized CPTAC3 a6b2589f-1f32-4752-87b9-ac13b6d33182 3c245f4afa68d0aed264b220dcfb34db {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_9f5a3438.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.genomic.gdc_realn.bam 9460036479 BAM genomic harmonized CPTAC3 efedb251-7150-41ca-a7c7-cff5d9a558b3 f3607f5b80b51e4568f518bf7e8991cf {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R1.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R1_001.fastq.gz 4497335523 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 7b04f1ce-15c3-43d2-9286-7a6d1f15e302 c0eb97ce345891af6daf78e0298b2701 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R2.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R2_001.fastq.gz 4812306259 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 4ba00e47-13e7-4f56-b8c4-77d73ba76363 13c2d5dd46289aeb707903a147444417 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_9f5a3438.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.transcriptome.gdc_realn.bam 13467018138 BAM transcriptome harmonized CPTAC3 a45675b4-d9dd-434e-bf60-1f1ba99bb365 0ef4e483876a03dc88f363f98b2ed0a0 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM submitted_aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM submitted_aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.RNA-Seq.chimeric.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.chimeric.gdc_realn.bam 81729999 BAM chimeric harmonized CPTAC3 15e54e5d-8151-45de-bedf-5c5b377f8cd1 2dbd687ffb1b37045ce45d0aaac7a94a {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.chimeric.gdc_realn.bam 41299237 BAM chimeric harmonized CPTAC3 27290952-fff8-42ed-a3aa-1876caa8dd40 0fde308c07c0790ad4c285ac0f4451ba {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.RNA-Seq.genomic.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.genomic.gdc_realn.bam 6920830541 BAM genomic harmonized CPTAC3 1358f298-f323-4428-ab6c-4c9c0d1a1c36 e8aebf888d077c9b4dc6a3e6aca0e56b {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.genomic.gdc_realn.bam 8713498273 BAM genomic harmonized CPTAC3 d6a6daab-f92b-4280-aef4-5754730368fd 403e5a66072f7c810ca03ffbb9afe13a {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.RNA-Seq.S12_L003_R1.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R1_001.fastq.gz 3538178356 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 d7f5f1c4-4092-45ab-95f7-571f2aeb4b58 3be4f172a7798a029e44faabab7e5aec {"aliquot_tag": "ALQ_75257ac9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.RNA-Seq.S12_L003_R2.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R2_001.fastq.gz 3745507489 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 d69e6d8c-0db1-43d0-817e-71306ba1e0b6 f9a0af7c4a60f562e361e9d71128b85f {"aliquot_tag": "ALQ_75257ac9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.RNA-Seq.S9_L006_R1.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R1_001.fastq.gz 4675518805 FASTQ S9_L006_R1 submitted_unaligned CPTAC3 afd5ee0e-563c-4238-876a-a1f103037d5b 18912a5c516d47a67af05aebd310cb6b {"aliquot_tag": "ALQ_48455379", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.RNA-Seq.S9_L006_R2.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R2_001.fastq.gz 5005750144 FASTQ S9_L006_R2 submitted_unaligned CPTAC3 0e355758-ba51-4012-8001-df2c458e6742 2266ab7b0e9619b251438371ca3c2118 {"aliquot_tag": "ALQ_48455379", "sample": "S9", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.RNA-Seq.transcriptome.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.transcriptome.gdc_realn.bam 8745017212 BAM transcriptome harmonized CPTAC3 d74134a6-43a0-4785-a963-2aa9076ae796 53bbccb224fcbd94a1ec370d6cee8cf8 {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.transcriptome.gdc_realn.bam 10307359310 BAM transcriptome harmonized CPTAC3 50c099e3-f37b-4e62-bf61-9f3730126961 96e93b8900ad9d3dc3ec5f7bdf06768b {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.WGS.A C3L-00908 CCRCC WGS tissue_normal CPT0086370009 CPT0086370009.WholeGenome.RP-1303.bam 55614160288 BAM submitted_aligned CPTAC3 cfc1cfce-10fe-4132-8a7d-f0c17f9769dc d53670a31e44a2b09fffee26ada8728e {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.WGS.A.hg38 C3L-00908 CCRCC WGS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wgs_gdc_realn.bam 83858918538 BAM harmonized CPTAC3 b76815f5-7f34-444f-b515-073f3c0fd55d bff453956793aeb5cb46435f151ba533 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.WGS.N C3L-00908 CCRCC WGS blood_normal CPT0087380001 CPT0087380001.WholeGenome.RP-1303.bam 69005389034 BAM submitted_aligned CPTAC3 54774f95-e0ed-4a0b-902c-c384803cae33 fd939819ecd82cdff5f16167e19f9c32 {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00908.WGS.N.hg38 C3L-00908 CCRCC WGS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 105491829001 BAM harmonized CPTAC3 d439db67-28d0-4b23-acfb-e87f913d6ada 5176c8427cd82b2796bd0e61c6334fcc {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00908.WGS.T C3L-00908 CCRCC WGS tumor CPT0086360009 CPT0086360009.WholeGenome.RP-1303.bam 89053374471 BAM submitted_aligned CPTAC3 b501f200-b532-4a5c-b0f2-7f0ff1c6bd64 536341c7701d23e9c9334d1e55743944 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 136492159740 BAM harmonized CPTAC3 4702b461-f88e-4036-87cd-c8fc4ee0b733 ed3f6a0865cdf184a800f7b9f5dfe402 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.WXS.A C3L-00908 CCRCC WXS tissue_normal CPT0086370009 CPT0086370009.WholeExome.RP-1303.bam 30544588614 BAM submitted_aligned CPTAC3 d4991d91-01ce-45a4-9b10-485aad476e6a b751d56da3f7b0ebb47da449ef7ed358 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.WXS.A.hg38 C3L-00908 CCRCC WXS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wxs_gdc_realn.bam 41542806405 BAM harmonized CPTAC3 07483db5-5911-49c3-ba62-ddbeb3f36763 a3f02afe2a04ad9f9a5262654dd86718 {"aliquot_tag": "ALQ_e59a6758", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00908.WXS.N C3L-00908 CCRCC WXS blood_normal CPT0087380001 CPT0087380001.WholeExome.RP-1303.bam 30365609689 BAM submitted_aligned CPTAC3 5e5c70f1-421b-455e-974a-a7f7782c2ddc d73d36afe6381f4b44e0561f695473a9 {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00908.WXS.N.hg38 C3L-00908 CCRCC WXS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 41730911569 BAM harmonized CPTAC3 9cf12b3e-3b97-4c25-ad51-d1eb46e5680d af151bc10b06cf1ddfa2b553fb3e4863 {"aliquot_tag": "ALQ_cf66730f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00908.WXS.T C3L-00908 CCRCC WXS tumor CPT0086360009 CPT0086360009.WholeExome.RP-1303.bam 29790261749 BAM submitted_aligned CPTAC3 f4f582bd-83a1-4d41-a4cb-8664d0d070a4 cd447af368efb58b7861fbbd2930fe80 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 41321920933 BAM harmonized CPTAC3 7b0b6dc8-1437-4e91-a429-7bd9a48baa58 1f015c2e7f09eb87b9b567a4ac6bddc9 {"aliquot_tag": "ALQ_d8fa4ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.MethArray.Green.A C3L-00910 CCRCC Methylation_Array tissue_normal CPT0007870009 203027390029_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 ce7a64d5-0c3d-4257-beae-974cf92bb974 ec32b0d8c542bf62478b8eef6c75e8e3 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.MethArray.Green.T C3L-00910 CCRCC Methylation_Array tumor CPT0007860009 202176290145_R03C01_Grn.idat 13676225 IDAT Green NA CPTAC3 da68f598-4293-4596-a38d-f04ed4cac2f8 b48a389dd72389b89727940929a235bf {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.MethArray.Red.A C3L-00910 CCRCC Methylation_Array tissue_normal CPT0007870009 203027390029_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 8a8605ac-fc32-4c40-bfa8-8f3df83d6a5b 47e4a67e542be95248284df8095e60f0 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.MethArray.Red.T C3L-00910 CCRCC Methylation_Array tumor CPT0007860009 202176290145_R03C01_Red.idat 13676225 IDAT Red NA CPTAC3 d723e119-becf-46ad-9696-9d49c38341d1 a5434b3a3350c0494894f2160b390011 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.miRNA-Seq.A.hg38 C3L-00910 CCRCC miRNA-Seq tissue_normal CPT0007870006 45aa7950-289e-47d5-a2e0-d276d46c5cf7_mirnaseq_gdc_realn.bam 219696000 BAM harmonized CPTAC3 fddaff9a-3ede-4884-99a3-e47ab867179a 3aca61e4d4308943465f546a1aa2ce6d {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.miRNA-Seq.S20_L005_R1.T C3L-00910 CCRCC miRNA-Seq tumor CPT0007860006 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L005_R1_001.unaln.bam 199920397 BAM S20_L005_R1 submitted_unaligned CPTAC3 4e3119e6-0699-437c-8b8d-406f74e35d58 f413db9a867c3267c23c80e607a60301 {"aliquot_tag": "ALQ_5710b3bb", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.miRNA-Seq.S42_L004_R1.A C3L-00910 CCRCC miRNA-Seq tissue_normal CPT0007870006 181108_UNC31-K00269_0163_BH23TVBBXY_TAATCG_S42_L004_R1_001.unaln.bam 195964642 BAM S42_L004_R1 submitted_unaligned CPTAC3 9e0546ae-feba-46f5-aea7-7dc39be9637c eb2b18c265992cdd44b1a0d045e81c49 {"aliquot_tag": "ALQ_6a709a0b", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.miRNA-Seq.T.hg38 C3L-00910 CCRCC miRNA-Seq tumor CPT0007860006 c1279fe0-477e-4cd6-a74b-8bafe92fa5ac_mirnaseq_gdc_realn.bam 220116694 BAM harmonized CPTAC3 9d91442b-8805-4b04-8ccf-17a01e1ee523 82dfb686ef393a717826d2d0e211699a {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.RNA-Seq.chimeric.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.chimeric.gdc_realn.bam 95399916 BAM chimeric harmonized CPTAC3 78d37770-7c21-478c-a132-29966cc2f161 3f1c82364c1c1f7002ad013ef80a868b {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.RNA-Seq.chimeric.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.chimeric.gdc_realn.bam 83131684 BAM chimeric harmonized CPTAC3 d77172d2-cf31-4c33-865a-d089e8bb0fa5 d28a80d58082e0ad9c9c2c750a13eaa4 {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.RNA-Seq.genomic.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.genomic.gdc_realn.bam 7908935065 BAM genomic harmonized CPTAC3 0e814afa-6f21-491a-a029-ae264e9bc6d7 690643d8fe0fe6faa196d1c70ed2b42e {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.RNA-Seq.genomic.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.genomic.gdc_realn.bam 10518278293 BAM genomic harmonized CPTAC3 f005ebf1-b806-4ec5-ae90-6cdd4a4499c2 dff01841d5195bea110c3d8da7843c54 {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.RNA-Seq.S43_L004_R1.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R1_001.fastq.gz 4001058274 FASTQ S43_L004_R1 submitted_unaligned CPTAC3 3730b063-50d4-4a07-aecc-38fa8c8cb9d7 87ee7cc241a1ae8d6989f2fc8d4465a7 {"aliquot_tag": "ALQ_6a709a0b", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.RNA-Seq.S43_L004_R2.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R2_001.fastq.gz 4005216188 FASTQ S43_L004_R2 submitted_unaligned CPTAC3 d2dc565a-5504-487a-bcf8-76a09155b440 5867f39f14427ba58e0f5146f1e4aaab {"aliquot_tag": "ALQ_6a709a0b", "sample": "S43", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.RNA-Seq.S5_L002_R1.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R1_001.fastq.gz 5135403695 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 0a8bfa04-4555-4df3-9b8c-6b889b56e524 4b4d3f2f9ceffcedbeb21b9278fa5521 {"aliquot_tag": "ALQ_5710b3bb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.RNA-Seq.S5_L002_R2.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R2_001.fastq.gz 5573420983 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 9fcf3a6b-36d5-487e-b884-ed8fd820cef1 b2b252b6f29be49cc56c00116848e710 {"aliquot_tag": "ALQ_5710b3bb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.RNA-Seq.transcriptome.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.transcriptome.gdc_realn.bam 9815764250 BAM transcriptome harmonized CPTAC3 7144c502-5db2-47d5-b185-6eac8513758e b2c8cf5ee63de27c5084fe79f3b7244d {"aliquot_tag": "ALQ_6a709a0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.RNA-Seq.transcriptome.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.transcriptome.gdc_realn.bam 14513257300 BAM transcriptome harmonized CPTAC3 a37bcda9-2d50-4030-89f7-b2a496979ff7 1f35bc3fc8776b2fa125e09ae340aff0 {"aliquot_tag": "ALQ_5710b3bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.WGS.A C3L-00910 CCRCC WGS tissue_normal CPT0007870009 CPT0007870009.WholeGenome.RP-1303.bam 60782507590 BAM submitted_aligned CPTAC3 78ec418d-7830-4f16-8159-04d973c573b8 fb0e39710ace281073c4d0b46e3ec50f {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.WGS.A.hg38 C3L-00910 CCRCC WGS tissue_normal CPT0007870009 9039addf-b905-4979-b0ec-8d2f9424bbff_wgs_gdc_realn.bam 89398034499 BAM harmonized CPTAC3 5fe2f086-d372-4df1-9803-27e162da85b3 2626851fbff14c269107de022134c197 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.WGS.N C3L-00910 CCRCC WGS blood_normal CPT0002930002 CPT0002930002.WholeGenome.RP-1303.bam 59612869733 BAM submitted_aligned CPTAC3 3250f607-2070-4438-9a47-7621a55740f2 53444d2a7f3d356d491e524422ede787 {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00910.WGS.N.hg38 C3L-00910 CCRCC WGS blood_normal CPT0002930002 bae124ef-545f-4ee7-b213-6cc7a8318785_gdc_realn.bam 87466587126 BAM harmonized CPTAC3 3a79d49e-03d5-4684-9fb2-7039f09e059a 7497e1b9bc3238ae0ee4f50c9c3b9eef {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00910.WGS.T C3L-00910 CCRCC WGS tumor CPT0007860009 CPT0007860009.WholeGenome.RP-1303.bam 57272428769 BAM submitted_aligned CPTAC3 1ecf027d-0067-4bb6-bf58-66df2d234179 d9a01f3f8a7de017329e3747783870f6 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.WGS.T.hg38 C3L-00910 CCRCC WGS tumor CPT0007860009 0e1ef677-2bda-46f2-b966-2aeecae64ba3_gdc_realn.bam 83031536236 BAM harmonized CPTAC3 6e016003-caf6-4de6-9e9c-c661a806ef59 e6b08d9262f3e9eb1217277a11ff9c4f {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.WXS.A C3L-00910 CCRCC WXS tissue_normal CPT0007870009 CPT0007870009.WholeExome.RP-1303.bam 37100414017 BAM submitted_aligned CPTAC3 afb6cc79-fa0d-4e72-b7be-84b7f5d78f07 2568e02d09b4563ec6254ef173b58b03 {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.WXS.A.hg38 C3L-00910 CCRCC WXS tissue_normal CPT0007870009 9039addf-b905-4979-b0ec-8d2f9424bbff_wxs_gdc_realn.bam 51473588558 BAM harmonized CPTAC3 27fbdf8a-939a-4ca9-80e3-b4c793e5a834 bbe3cbe1ee5a00a70b0e5e3c37cabade {"aliquot_tag": "ALQ_facf879a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00910.WXS.N C3L-00910 CCRCC WXS blood_normal CPT0002930002 CPT0002930002.WholeExome.RP-1303.bam 29345694268 BAM submitted_aligned CPTAC3 957e9fda-2c54-4fe9-bb1d-6e83f0a2fb22 9fe91e402686029a915279ac4976ce7f {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00910.WXS.N.hg38 C3L-00910 CCRCC WXS blood_normal CPT0002930002 bae124ef-545f-4ee7-b213-6cc7a8318785_gdc_realn.bam 40941856182 BAM harmonized CPTAC3 a830ee67-80a9-452b-8f2c-7c54d60e85bc 94cec3489b57aa0412db09083dd35897 {"aliquot_tag": "ALQ_1f904d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00910.WXS.T C3L-00910 CCRCC WXS tumor CPT0007860009 CPT0007860009.WholeExome.RP-1303.bam 28406604859 BAM submitted_aligned CPTAC3 8bc9b1cb-7112-412d-8b22-439db34e8446 d86cf084a4e8d0f2cb3360a73da68211 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00910.WXS.T.hg38 C3L-00910 CCRCC WXS tumor CPT0007860009 0e1ef677-2bda-46f2-b966-2aeecae64ba3_gdc_realn.bam 38709980772 BAM harmonized CPTAC3 f4679565-9c0b-4a57-81dd-a7874201e89a c6a2e38aa580dea330782b45bf7efd05 {"aliquot_tag": "ALQ_c7afae2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.MethArray.Green.A C3L-00913 LUAD Methylation_Array tissue_normal CPT0106100008 203027390120_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e0ef6852-4b26-445f-b98c-0cac27ef97a8 887369a7a9a5d319a739c41fae2138b1 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.MethArray.Green.T C3L-00913 LUAD Methylation_Array tumor CPT0106110009 202234380054_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e7da3749-5514-4f72-a487-f1b6a9fe1206 d6f4d812357052c1662ed46815b08d43 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.MethArray.Red.A C3L-00913 LUAD Methylation_Array tissue_normal CPT0106100008 203027390120_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 561aa0c4-594b-4c5c-83ad-bc7893e19b04 27abc183eae8e951ce5ba9b81d2ad762 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.MethArray.Red.T C3L-00913 LUAD Methylation_Array tumor CPT0106110009 202234380054_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 ebbc91fd-10e1-4dbb-a7c3-213220b1920a fc72f7138ed51b2a4da881b37a81fa31 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.miRNA-Seq.A.hg38 C3L-00913 LUAD miRNA-Seq tissue_normal CPT0106100006 af35fe2c-577f-4af2-8f10-f09337793517_mirnaseq_gdc_realn.bam 257554622 BAM harmonized CPTAC3 f4d531ec-fa88-40d7-9df0-58b778598f03 b29b254b5c9b3e0b1df9c2c267cf4999 {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.miRNA-Seq.S14_L007_R1.A C3L-00913 LUAD miRNA-Seq tissue_normal CPT0106100006 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L007_R1_001.unaln.bam 235493064 BAM S14_L007_R1 submitted_unaligned CPTAC3 c3f1a783-7f56-480c-a737-951cb964ad44 c702577743b3a93b0ac52305407f707b {"aliquot_tag": "ALQ_4e530824", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.miRNA-Seq.S43_L007_R1.T C3L-00913 LUAD miRNA-Seq tumor CPT0106110006 181108_UNC31-K00269_0163_BH23TVBBXY_TACAGC_S43_L007_R1_001.unaln.bam 176735347 BAM S43_L007_R1 submitted_unaligned CPTAC3 786242cb-2575-4e71-a955-a10cb47e508d 53877f8c03a857556efec796dbcc1353 {"aliquot_tag": "ALQ_73332194", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.miRNA-Seq.T.hg38 C3L-00913 LUAD miRNA-Seq tumor CPT0106110006 f9312019-a312-4c83-b179-ce0a3bac8624_mirnaseq_gdc_realn.bam 197483472 BAM harmonized CPTAC3 aa7890fa-113f-4b8c-a989-c2434e60991b 551ba297c9a37d6fcb87f1868d5d820b {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.RNA-Seq.chimeric.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.chimeric.gdc_realn.bam 94964374 BAM chimeric harmonized CPTAC3 37bfaf8a-7416-4385-b40f-88fb06c45f87 5bfd8db8624594bfc866dbfdb92fac43 {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.RNA-Seq.chimeric.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.chimeric.gdc_realn.bam 35924762 BAM chimeric harmonized CPTAC3 974cb715-8c29-4e2f-a4c8-19beb2bf43e1 80b79bf9bc19c237b302bc951f088851 {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.RNA-Seq.genomic.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.genomic.gdc_realn.bam 8270843262 BAM genomic harmonized CPTAC3 e1dff40e-5128-4d74-a0a6-715ea7967504 0798306b74c27ee46509527f1e0a16ed {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.RNA-Seq.genomic.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.genomic.gdc_realn.bam 8283900773 BAM genomic harmonized CPTAC3 f37213f9-6f72-4684-84c8-487854b332d6 4762e17fc08cf653e20e5f6120e0694c {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.RNA-Seq.S10_L003_R1.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R1_001.fastq.gz 4198775387 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 ca975c52-262a-4714-acaa-fc16d9c42fe8 8c5a0684028d94b51b317d40f0ddb225 {"aliquot_tag": "ALQ_4e530824", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.RNA-Seq.S10_L003_R2.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R2_001.fastq.gz 4651665309 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 b5734aa7-9f6b-43f4-b1db-2bae2c858440 17a73b0372abaa7477c7b37882313cf1 {"aliquot_tag": "ALQ_4e530824", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.RNA-Seq.S19_L005_R1.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3513974649 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 8bd0cbdd-4252-47f9-9abe-b62369d87078 755591d5785a65391bb22e66cfdfa0d5 {"aliquot_tag": "ALQ_73332194", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.RNA-Seq.S19_L005_R2.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3932200443 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 768234aa-5b23-49f2-a44e-c51d7fad1ba8 c74d3e24b12310885a72a84660bece7f {"aliquot_tag": "ALQ_73332194", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.RNA-Seq.transcriptome.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.transcriptome.gdc_realn.bam 10624508966 BAM transcriptome harmonized CPTAC3 53a4c409-846c-4d4e-bf25-c70065f47a5f 13c60f454f1e24492ab38fd4c6cbf4ed {"aliquot_tag": "ALQ_4e530824", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.RNA-Seq.transcriptome.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.transcriptome.gdc_realn.bam 10418999370 BAM transcriptome harmonized CPTAC3 02459e8f-2abe-412d-affa-46cb665ab3d1 9ba500efdb66ff7fd34fbab3d686f155 {"aliquot_tag": "ALQ_73332194", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.WGS.A C3L-00913 LUAD WGS tissue_normal CPT0106100008 CPT0106100008.WholeGenome.RP-1303.bam 57899224769 BAM submitted_aligned CPTAC3 9c1f4a13-9395-4399-9cf6-e3cef8c7996b 03e5d24386042b1cb59efe4899d09cb5 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.WGS.A.hg38 C3L-00913 LUAD WGS tissue_normal CPT0106100008 1cc1dfd5-2037-4c9f-91de-bb275a30e38e_wgs_gdc_realn.bam 85213498620 BAM harmonized CPTAC3 ad01a95f-3c61-44da-aa07-f063e6c82e3b 2db9621d161b3524ceab93538fe682a7 {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.WGS.N C3L-00913 LUAD WGS blood_normal CPT0107080002 CPT0107080002.WholeGenome.RP-1303.bam 65787204824 BAM submitted_aligned CPTAC3 cf2a1ac2-8256-4355-a11b-f7312b0d8a93 7c93e4b3a0b62c0da721879a512311f2 {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00913.WGS.N.hg38 C3L-00913 LUAD WGS blood_normal CPT0107080002 84a2ecc7-55f4-4985-810f-c38e9258e6bb_wgs_gdc_realn.bam 96270239900 BAM harmonized CPTAC3 113ddb52-9242-45d9-a09f-fef793fefa30 ab9364d90f7db635aca5e74a3c01add5 {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00913.WGS.T C3L-00913 LUAD WGS tumor CPT0106110009 CPT0106110009.WholeGenome.RP-1303.bam 71418925914 BAM submitted_aligned CPTAC3 1f5662dd-f2b7-4e53-8094-3e848944110a 1c17f23dcc608bba8007b721aee8fa60 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.WGS.T.hg38 C3L-00913 LUAD WGS tumor CPT0106110009 875fe663-c1d0-4ea7-825e-a718f4a7c4a2_wgs_gdc_realn.bam 104860154604 BAM harmonized CPTAC3 1475f55f-5ead-4a97-adc7-667b5ccd60ce d0f7a894e16af98a95275a8fe68f5ede {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.WXS.A C3L-00913 LUAD WXS tissue_normal CPT0106100008 CPT0106100008.WholeExome.RP-1303.bam 34916961122 BAM submitted_aligned CPTAC3 29c787d9-7666-435a-9a12-3e29fe113264 2de62eed28bf400ed8f9d37453dce01d {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.WXS.A.hg38 C3L-00913 LUAD WXS tissue_normal CPT0106100008 1cc1dfd5-2037-4c9f-91de-bb275a30e38e_wxs_gdc_realn.bam 47339339748 BAM harmonized CPTAC3 a95a7ee7-b3fe-4eef-afbd-d504d39a6f92 840446376cc5395e368e4ad65049230b {"aliquot_tag": "ALQ_a9eb2523", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00913.WXS.N C3L-00913 LUAD WXS blood_normal CPT0107080002 CPT0107080002.WholeExome.RP-1303.bam 34088375727 BAM submitted_aligned CPTAC3 58613a1c-49a7-40dd-956b-531bc4361272 a79d5ffa9df908666475e80a8c28da61 {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00913.WXS.N.hg38 C3L-00913 LUAD WXS blood_normal CPT0107080002 84a2ecc7-55f4-4985-810f-c38e9258e6bb_wxs_gdc_realn.bam 44439910332 BAM harmonized CPTAC3 8718dc36-49b1-434b-8b54-112473c424fb fd046b4052279829d58e7dc0e078db4a {"aliquot_tag": "ALQ_14655fed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00913.WXS.T C3L-00913 LUAD WXS tumor CPT0106110009 CPT0106110009.WholeExome.RP-1303.bam 39572813513 BAM submitted_aligned CPTAC3 51c23287-762d-4687-a202-6a359fa4dad1 bdb8c45d82bf162482ab175ac1db2981 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00913.WXS.T.hg38 C3L-00913 LUAD WXS tumor CPT0106110009 875fe663-c1d0-4ea7-825e-a718f4a7c4a2_wxs_gdc_realn.bam 55521480077 BAM harmonized CPTAC3 08a37787-06e2-4bf3-8918-08cd27e8f024 63d285329a2cebc8b104fbe938da21e1 {"aliquot_tag": "ALQ_e38c3c05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.MethArray.Green.A C3L-00917 CCRCC Methylation_Array tissue_normal CPT0023710009 203027380024_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 0254d96d-d35d-4bcf-bddd-53b1c5a133b5 fb7b9854a85e64948044be75a21dda8c {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.MethArray.Green.T C3L-00917 CCRCC Methylation_Array tumor CPT0023690006 202163530118_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a4acdcb7-ceef-455c-b95b-e0c26c96ff77 611ae5a3f17f3398efbc7ce9b6c441b2 {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.MethArray.Red.A C3L-00917 CCRCC Methylation_Array tissue_normal CPT0023710009 203027380024_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 d81a2c35-7db0-4310-96e7-f6e0daf6c504 b820c92e5d69f73573829fc2c198fb05 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.MethArray.Red.T C3L-00917 CCRCC Methylation_Array tumor CPT0023690006 202163530118_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 6b008140-64d6-4179-9185-90f44e012e09 9d03ed061a8321af4221e6fb9e423188 {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.miRNA-Seq.A.hg38 C3L-00917 CCRCC miRNA-Seq tissue_normal CPT0023710006 61fd5b56-5683-4f1a-bb58-b55e17697515_mirnaseq_gdc_realn.bam 184383902 BAM harmonized CPTAC3 521935a3-6a08-4ca9-adf3-8e8e8610b203 1f4e870084d1597bf52dd4d6df2f9ff3 {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.miRNA-Seq.S44_L004_R1.T C3L-00917 CCRCC miRNA-Seq tumor CPT0023690009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGGCC_S44_L004_R1_001.unaln.bam 179568053 BAM S44_L004_R1 submitted_unaligned CPTAC3 d03a8b3c-b15c-4fcd-ab8e-4ce5ebe6b27b 48e1adebf562ea202286ba5d5db9e275 {"aliquot_tag": "ALQ_c99f7be5", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.miRNA-Seq.S4_L003_R1.A C3L-00917 CCRCC miRNA-Seq tissue_normal CPT0023710006 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L003_R1_001.unaln.bam 167528156 BAM S4_L003_R1 submitted_unaligned CPTAC3 41cb9eb5-6f16-4727-8631-18063710fef8 a8d70d47124ca3758c1c832c7cc26792 {"aliquot_tag": "ALQ_a20cfe10", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.miRNA-Seq.T.hg38 C3L-00917 CCRCC miRNA-Seq tumor CPT0023690009 12d298f2-5f27-4c87-888c-2ee9f6d11062_mirnaseq_gdc_realn.bam 202177662 BAM harmonized CPTAC3 6a475c9c-bfd8-4ba9-a21f-507e6a3b344c b55852efddb82e9d1cb023a1f99a53c2 {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.RNA-Seq.chimeric.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.chimeric.gdc_realn.bam 59891779 BAM chimeric harmonized CPTAC3 eeda21d1-e364-41fb-aef5-09cbea506248 6f4dda04fc3a7cdad73c79bbad29157e {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.RNA-Seq.chimeric.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.chimeric.gdc_realn.bam 50591479 BAM chimeric harmonized CPTAC3 650e7638-3a47-45a8-9f38-b9203d3d8a87 4a0778659f4f350cd82e6bb07d9089c2 {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.RNA-Seq.genomic.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.genomic.gdc_realn.bam 7589080173 BAM genomic harmonized CPTAC3 21105199-9c22-40b7-bbe2-2afdaff7df6a aca73a1c18d87797a1c1821647276cef {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.RNA-Seq.genomic.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.genomic.gdc_realn.bam 6841282923 BAM genomic harmonized CPTAC3 8e4c6f57-04d1-463d-b956-84b9af13b922 7b27edad141e7cda9b99788a8008891a {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.RNA-Seq.S12_L008_R1.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R1_001.fastq.gz 3118278132 FASTQ S12_L008_R1 submitted_unaligned CPTAC3 1ed2a869-4360-4d55-bd87-c57a892bc3f3 00deeae1442e1c427fec97538998270d {"aliquot_tag": "ALQ_c99f7be5", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.RNA-Seq.S12_L008_R2.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R2_001.fastq.gz 3416970953 FASTQ S12_L008_R2 submitted_unaligned CPTAC3 03e6f81f-9409-49d1-ba62-339159496523 2c695063e80464d6b3d8fb1fd2da49b3 {"aliquot_tag": "ALQ_c99f7be5", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.RNA-Seq.S21_L006_R1.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R1_001.fastq.gz 3859648612 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 22c8d9e9-33e6-4d4b-beaa-b4f1dfcc58ae 4b975fd02e5a59ea986772428e19ccb9 {"aliquot_tag": "ALQ_a20cfe10", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.RNA-Seq.S21_L006_R2.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R2_001.fastq.gz 4263783129 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 c146ca79-3096-425f-ad59-0c5fe7967560 2a95304b5d3139787fdebf0def84b20a {"aliquot_tag": "ALQ_a20cfe10", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.RNA-Seq.transcriptome.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.transcriptome.gdc_realn.bam 9865971585 BAM transcriptome harmonized CPTAC3 9cbc32b2-07c1-4b3a-9384-41542a6cfd8a 663abbb3afebbf4280d5367c299e7500 {"aliquot_tag": "ALQ_a20cfe10", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.RNA-Seq.transcriptome.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.transcriptome.gdc_realn.bam 8285211558 BAM transcriptome harmonized CPTAC3 b90bc3f2-aca8-4167-aa9d-6b0e4cfc8083 7b410e0ea3cea322bfdb996e2ef7a0bd {"aliquot_tag": "ALQ_c99f7be5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.WGS.A C3L-00917 CCRCC WGS tissue_normal CPT0023710009 CPT0023710009.WholeGenome.RP-1303.bam 64447326962 BAM submitted_aligned CPTAC3 5cbc0f98-0158-473e-94a4-fa97231d503a ffd51e3a65e29578bfda0abecf411e5c {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.WGS.A.hg38 C3L-00917 CCRCC WGS tissue_normal CPT0023710009 429fb668-d2e2-4795-a428-381b42a59d9c_wgs_gdc_realn.bam 93068977366 BAM harmonized CPTAC3 2e205986-8edc-41d8-9b3a-014c403e74b9 eba526029b13318a7cb8f97e42aad117 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.WGS.N C3L-00917 CCRCC WGS blood_normal CPT0024600002 CPT0024600002.WholeGenome.RP-1303.bam 58201632564 BAM submitted_aligned CPTAC3 a8d5ae99-06e4-4e77-9a8e-852d5bc94c40 c6de275523e0a018d39e878bf1d5e8d9 {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00917.WGS.N.hg38 C3L-00917 CCRCC WGS blood_normal CPT0024600002 cc236dce-92c9-4fa9-ad90-39b91962c931_gdc_realn.bam 83977506410 BAM harmonized CPTAC3 e48eecca-694f-4ede-9b35-bc42b70d4e1a 083336ddcc766cfee1f8674731fd5b45 {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00917.WGS.T C3L-00917 CCRCC WGS tumor CPT0023690006 CPT0023690006.WholeGenome.RP-1303.bam 68503465181 BAM submitted_aligned CPTAC3 f93778fd-48f3-4e90-83e4-07cf758bd62f ecec69ac43f48e6510acef95380939ef {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.WGS.T.hg38 C3L-00917 CCRCC WGS tumor CPT0023690006 308dd895-cf14-467d-93c0-50c795c9a126_gdc_realn.bam 99465304548 BAM harmonized CPTAC3 b2fe9d25-dbb5-4e32-a93f-dd0cbb75a4f0 d23463ce53a5bfeb1db42c30eddb1728 {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.WXS.A C3L-00917 CCRCC WXS tissue_normal CPT0023710009 CPT0023710009.WholeExome.RP-1303.bam 25317917691 BAM submitted_aligned CPTAC3 cc05937b-444e-45d1-b035-df0cc1d8e207 eaa14310fe162d0d28e4bb720e463f52 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.WXS.A.hg38 C3L-00917 CCRCC WXS tissue_normal CPT0023710009 429fb668-d2e2-4795-a428-381b42a59d9c_wxs_gdc_realn.bam 34708479588 BAM harmonized CPTAC3 b58c26a8-238d-45d4-9edb-eccbd286fac0 f57732ab746109d9e309a0c1ec6874b3 {"aliquot_tag": "ALQ_32b3e381", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00917.WXS.N C3L-00917 CCRCC WXS blood_normal CPT0024600002 CPT0024600002.WholeExome.RP-1303.bam 26657264094 BAM submitted_aligned CPTAC3 fb25c67e-3318-4905-a1ba-276fcd36de38 810c25ea093a3efb61933c581fbf9141 {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00917.WXS.N.hg38 C3L-00917 CCRCC WXS blood_normal CPT0024600002 cc236dce-92c9-4fa9-ad90-39b91962c931_gdc_realn.bam 36499893934 BAM harmonized CPTAC3 a1d33167-c9e0-4071-a1d3-4b562d355f98 b54403942f05b99a5948c1807ec946ac {"aliquot_tag": "ALQ_96fafe92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00917.WXS.T C3L-00917 CCRCC WXS tumor CPT0023690006 CPT0023690006.WholeExome.RP-1303.bam 19899553372 BAM submitted_aligned CPTAC3 9ba4ef5f-56c3-46b9-a920-ad499fb80b72 e218a35cd6167026b826e7aa12b5ac4f {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00917.WXS.T.hg38 C3L-00917 CCRCC WXS tumor CPT0023690006 308dd895-cf14-467d-93c0-50c795c9a126_gdc_realn.bam 27011736708 BAM harmonized CPTAC3 0efdc6a1-9dec-4891-8a54-43cd13d0b2d7 71991c1a7d80438c640af45ed6628bbe {"aliquot_tag": "ALQ_59206674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.MethArray.Green.T C3L-00918 UCEC Methylation_Array tumor CPT0063790006 202184900128_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bd8499ce-cc04-40ff-a759-3a22d1372c91 0e28d1e0a2d0bd01125fb37294537a91 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.MethArray.Red.T C3L-00918 UCEC Methylation_Array tumor CPT0063790006 202184900128_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 fcb08e1f-7577-4eb9-8f28-56b92d41baf0 5ba0c13441821b360431f4d25ece38a1 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.miRNA-Seq.S9_L003_R1.T C3L-00918 UCEC miRNA-Seq tumor CPT0063790009 180924_UNC31-K00269_0154_AHWTMLBBXX_CGTACG_S9_L003_R1_001.unaln.bam 160340862 BAM S9_L003_R1 submitted_unaligned CPTAC3 1da37b31-2a59-420e-b06f-e1d2f968f0f3 5614070dfbd976de1be45760feb33591 {"aliquot_tag": "ALQ_8689a6ba", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.miRNA-Seq.T.hg38 C3L-00918 UCEC miRNA-Seq tumor CPT0063790009 37e43244-d726-4ce9-b0e3-b7f3491f30b1_mirnaseq_gdc_realn.bam 176368410 BAM harmonized CPTAC3 73dc29a5-63ea-4b2e-88ba-8e62702b9c4b 35f7cdae02eb2d1b9f3370b42bfe3e1a {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.RNA-Seq.chimeric.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.chimeric.gdc_realn.bam 27457584 BAM chimeric harmonized CPTAC3 d3fed3a7-c320-4efc-ad5e-6a72fd6c3607 8a6e4b0e51ff2754b7f7839ab7313301 {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.RNA-Seq.genomic.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.genomic.gdc_realn.bam 8762291204 BAM genomic harmonized CPTAC3 d30d9a23-8eb8-4b4b-9599-da8bd63d182a 1580e516534f1ac43b833e12f2d39568 {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.RNA-Seq.S7_L008_R1.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 4242039089 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 3d47af04-fe23-4f4d-8ec2-66420dd82fef 1a8666ab9cfac332927285822c8d2098 {"aliquot_tag": "ALQ_8689a6ba", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.RNA-Seq.S7_L008_R2.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 4500612852 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 83a66e82-d19f-4dcd-bf04-33397c2160a9 feb25e2ab02df40ea16d2708d0086b64 {"aliquot_tag": "ALQ_8689a6ba", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.RNA-Seq.transcriptome.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.transcriptome.gdc_realn.bam 11919775610 BAM transcriptome harmonized CPTAC3 d955648a-ee6d-4bda-89f7-0c9fc4044875 624f5d3242d8622b99fecf3ecaa92567 {"aliquot_tag": "ALQ_8689a6ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.WGS.N C3L-00918 UCEC WGS blood_normal CPT0065320002 CPT0065320002.WholeGenome.RP-1303.bam 78838790842 BAM submitted_aligned CPTAC3 c3ee861e-3b26-4c51-9575-01f0f1973a6a 39067f406b2e2c07ce9a8aba12c2271e {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00918.WGS.N.hg38 C3L-00918 UCEC WGS blood_normal CPT0065320002 58bc0d8e-4cae-4a40-bc4a-2025637ff81d_gdc_realn.bam 122382006922 BAM harmonized CPTAC3 c04969da-c28a-4e6b-9b1a-cec0d56df395 f858811d394f1e75cc7fb715b6bb1114 {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00918.WGS.T C3L-00918 UCEC WGS tumor CPT0063790006 CPT0063790006.WholeGenome.RP-1303.bam 76722463278 BAM submitted_aligned CPTAC3 7fc416ab-e022-4409-8271-ac2a219895db 56b415d183ae355ed99ce02c072fbcbd {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.WGS.T.hg38 C3L-00918 UCEC WGS tumor CPT0063790006 2d192478-8285-48eb-855b-40b8ce2a42a0_gdc_realn.bam 115292505756 BAM harmonized CPTAC3 10d59b04-f3be-4df0-a5ad-217de279d020 a660000bc457204229c14a21c26c9aa5 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.WXS.N C3L-00918 UCEC WXS blood_normal CPT0065320002 CPT0065320002.WholeExome.RP-1303.bam 30378403177 BAM submitted_aligned CPTAC3 06bba088-33da-4c30-a61f-36044f8c44df f4cf038415b9841a644c61f122e24c1d {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00918.WXS.N.hg38 C3L-00918 UCEC WXS blood_normal CPT0065320002 58bc0d8e-4cae-4a40-bc4a-2025637ff81d_gdc_realn.bam 41113568078 BAM harmonized CPTAC3 b667c012-ee1a-4ddc-aee2-81635b8e37f4 8bf6aab77d8f935cbde489f43971d9ab {"aliquot_tag": "ALQ_9eca390f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00918.WXS.T C3L-00918 UCEC WXS tumor CPT0063790006 CPT0063790006.WholeExome.RP-1303.bam 41546438695 BAM submitted_aligned CPTAC3 789f0264-328e-4abc-bafe-07e555bb67e5 6b9fdfe42bd2e442d02f29a2285b1327 {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00918.WXS.T.hg38 C3L-00918 UCEC WXS tumor CPT0063790006 2d192478-8285-48eb-855b-40b8ce2a42a0_gdc_realn.bam 57688324627 BAM harmonized CPTAC3 dbc8d39f-66cc-4ec1-8988-d6997c19f80d 03db8746cee8f48f92979dd9794ece0f {"aliquot_tag": "ALQ_1636bb2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.ADD_30401fcd.miRNA-Seq.S2_L001_R1.T C3L-00921 UCEC miRNA-Seq tumor CPT0064150010 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L001_R1_001.unaln.bam 238853710 BAM S2_L001_R1 submitted_unaligned CPTAC3 f50bdf16-aa07-47d8-93dd-a13c78da85a5 5d142354e3bd4ca127fedc3141aa1ac9 {"aliquot_tag": "ADD_30401fcd", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.ADD_30401fcd.miRNA-Seq.T.hg38 C3L-00921 UCEC miRNA-Seq tumor CPT0064150010 b15faee2-7b32-4b28-9e58-b2feedd33cdf_mirnaseq_gdc_realn.bam 265239591 BAM harmonized CPTAC3 2b2cc310-0297-418b-b584-63db336bfcd6 a691105049edc1a8dde9e7da3de1ea35 {"aliquot_tag": "ADD_30401fcd", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.MethArray.Green.T C3L-00921 UCEC Methylation_Array tumor CPT0064150007 202184990057_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1ef8c0c1-a75d-4a93-a5cb-e2fe55858fbd 27b4956ae0ece26a38447f50018deb6f {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.MethArray.Red.T C3L-00921 UCEC Methylation_Array tumor CPT0064150007 202184990057_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 ec5b4e0e-9dcf-4431-82bc-ac86de5e6929 77738d0f37ad2827171c4862fa5f0a98 {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.chimeric.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.chimeric.gdc_realn.bam 63624121 BAM chimeric harmonized CPTAC3 05e91977-049d-455b-8c2d-4ffb3f83af8b 33516c0c4a14245db8238e010518c9f3 {"aliquot_tag": "ALQ_372ddbd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.chimeric.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.chimeric.gdc_realn.bam 143318674 BAM chimeric harmonized CPTAC3 595c6e54-a5c2-4934-93f4-ec912de3348d 4de7f4d889df7069afcece6d7b9a85f3 {"aliquot_tag": "ALQ_d10cc9ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.genomic.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.genomic.gdc_realn.bam 8017495229 BAM genomic harmonized CPTAC3 d3a11e83-7421-4b6f-97fc-5fd979326040 66f064f64bf01d676153fe88abbb0082 {"aliquot_tag": "ALQ_372ddbd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.genomic.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.genomic.gdc_realn.bam 7397003899 BAM genomic harmonized CPTAC3 249c366f-fd14-4068-b350-e7350e238f19 c34a06ace33f9e73ae52bbb3a34d6194 {"aliquot_tag": "ALQ_d10cc9ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.S47_R1.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R1_001.fastq.gz 4407530940 FASTQ S47_R1 submitted_unaligned CPTAC3 8a82365e-f5b9-4c4b-a9e1-901c71b6e37e c361dcf7ba6f61da6e6463345021a88c {"aliquot_tag": "ALQ_d10cc9ba", "sample": "S47", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.S47_R2.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R2_001.fastq.gz 4493903995 FASTQ S47_R2 submitted_unaligned CPTAC3 b44e884b-0b39-4fdc-bbad-5ff5c3b2a386 ace8ece2fa59d36a83229fda2a21c4a4 {"aliquot_tag": "ALQ_d10cc9ba", "sample": "S47", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.S7_L003_R1.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R1_001.fastq.gz 3584191981 FASTQ S7_L003_R1 submitted_unaligned CPTAC3 c8ac958e-2e20-4379-9568-7cc508e311de cd93965ee5b94e1f26b660f265784c4a {"aliquot_tag": "ALQ_372ddbd4", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.S7_L003_R2.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R2_001.fastq.gz 3766771238 FASTQ S7_L003_R2 submitted_unaligned CPTAC3 e292b646-ce77-45a1-a535-cb0dd26898e8 237962fbcb5e9e07fd8b865bfe4379e9 {"aliquot_tag": "ALQ_372ddbd4", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.transcriptome.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.transcriptome.gdc_realn.bam 6083886466 BAM transcriptome harmonized CPTAC3 4d19d87a-c449-462f-90aa-c5c5de468de7 313524262219902b6935c23a260e22dc {"aliquot_tag": "ALQ_372ddbd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.RNA-Seq.transcriptome.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.transcriptome.gdc_realn.bam 3108352788 BAM transcriptome harmonized CPTAC3 59c97a9a-ff51-45aa-b0b6-61c80b4ff46d 71f37f9f8ee038ca729a2069219ae6da {"aliquot_tag": "ALQ_d10cc9ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.WGS.N C3L-00921 UCEC WGS blood_normal CPT0065390002 CPT0065390002.WholeGenome.RP-1303.bam 74478942121 BAM submitted_aligned CPTAC3 04f2f715-5b80-41ac-ba2e-9c59a18b1a73 002f6b742ec792990b0dc6d96fd37743 {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00921.WGS.N.hg38 C3L-00921 UCEC WGS blood_normal CPT0065390002 5af0168b-bb1a-4771-a478-cb4f8ec8fde8_gdc_realn.bam 116281837995 BAM harmonized CPTAC3 4d726701-04ed-4a0a-bcab-495568a316e5 b865bf1bac6d0899f2292b787b4800c8 {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00921.WGS.T C3L-00921 UCEC WGS tumor CPT0064150007 CPT0064150007.WholeGenome.RP-1303.bam 66982886372 BAM submitted_aligned CPTAC3 046967f9-2fa5-4bc0-b032-9dec4caf1cad 95084754cecbe5ac36c052415c7b0bb0 {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.WGS.T.hg38 C3L-00921 UCEC WGS tumor CPT0064150007 b9d8510c-3b0e-49fb-98a3-c7db2cd05da7_gdc_realn.bam 101518905800 BAM harmonized CPTAC3 fa13139a-3e2c-49cd-9318-1d7dc55f2f19 5beb2b8dd8b81ee5abb419d26ee772ca {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.WXS.N C3L-00921 UCEC WXS blood_normal CPT0065390002 CPT0065390002.WholeExome.RP-1303.bam 21022096387 BAM submitted_aligned CPTAC3 c8287e6d-4867-410b-98f2-30f66d47beea d62e19ccdaf64e4f5e874279b29b4eee {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00921.WXS.N.hg38 C3L-00921 UCEC WXS blood_normal CPT0065390002 5af0168b-bb1a-4771-a478-cb4f8ec8fde8_gdc_realn.bam 28356223871 BAM harmonized CPTAC3 2bb81d8c-9d4e-441e-ad35-b5c5474a8559 a8f78a9da29320bc4980ee6d363295dd {"aliquot_tag": "ALQ_e91a081e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00921.WXS.T C3L-00921 UCEC WXS tumor CPT0064150007 CPT0064150007.WholeExome.RP-1303.bam 26912544724 BAM submitted_aligned CPTAC3 2e22b0b0-8496-4694-b710-1cd7c98b5c66 32d45712c769d93e4529707aefe8dd32 {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00921.WXS.T.hg38 C3L-00921 UCEC WXS tumor CPT0064150007 b9d8510c-3b0e-49fb-98a3-c7db2cd05da7_gdc_realn.bam 36702146113 BAM harmonized CPTAC3 08f80502-5363-432c-93ae-25f87330cf9e bc0794425a7cabe08efafd531631964a {"aliquot_tag": "ALQ_b73fbb2f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.MethArray.Green.A C3L-00923 LSCC Methylation_Array tissue_normal CPT0063440006 203219760074_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 332d2f00-9e4c-4d4f-92ab-71d70d57017c 8fe8356401e7522974dc6f54de7bedef {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.MethArray.Green.T C3L-00923 LSCC Methylation_Array tumor CPT0063430009 202184990059_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b109556c-a144-4b9e-824d-7599e0a6b39b 834a1a156184a06a20822fa0710f581f {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.MethArray.Red.A C3L-00923 LSCC Methylation_Array tissue_normal CPT0063440006 203219760074_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 c7ff11f7-1ffd-46c5-8d68-0d0f9f3f1ba6 1ec638e860163b8a628520257e52b9d6 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.MethArray.Red.T C3L-00923 LSCC Methylation_Array tumor CPT0063430009 202184990059_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b6ac61c-e187-4f22-89fa-6828191e5ced af10b011784888eb01efa58e64b517c8 {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.miRNA-Seq.A.hg38 C3L-00923 LSCC miRNA-Seq tissue_normal CPT0063440009 e0c4c91e-2ec8-44a1-8656-9da7b994ff18_mirnaseq_gdc_realn.bam 291382609 BAM harmonized CPTAC3 70fbdc95-bb4e-490d-bfa1-27bd52f26e02 af65b893dbad506b74188cd84d4c4a46 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.miRNA-Seq.S14_L003_R1.T C3L-00923 LSCC miRNA-Seq tumor CPT0063430006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTAGAG_S14_L003_R1_001.unaln.bam 205878063 BAM S14_L003_R1 submitted_unaligned CPTAC3 85a5f639-90bc-4bfe-9311-0c9d12f41c34 be160f5a6b9067a9737ab3f5805721e6 {"aliquot_tag": "ALQ_da12d124", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.miRNA-Seq.S37_L006_R1.A C3L-00923 LSCC miRNA-Seq tissue_normal CPT0063440009 181113_UNC31-K00269_0164_AH23NNBBXY_AGTCAA_S37_L006_R1_001.unaln.bam 261455917 BAM S37_L006_R1 submitted_unaligned CPTAC3 81c240af-3dab-4c85-9ef2-82b0c40db1e4 07a8f11ca358d22bd5ce47e2706bb145 {"aliquot_tag": "ALQ_f88d10a5", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.miRNA-Seq.T.hg38 C3L-00923 LSCC miRNA-Seq tumor CPT0063430006 8b92affc-6c61-42fd-84ef-13b076d67b90_mirnaseq_gdc_realn.bam 230685844 BAM harmonized CPTAC3 4d5a7ed5-66d8-48fb-95f8-596d85ef10a3 43f272fa0171451254a1b6548cf26cc4 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.RNA-Seq.chimeric.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.chimeric.gdc_realn.bam 33315321 BAM chimeric harmonized CPTAC3 8fd531d1-6066-49a1-8d4a-54f8ef731e4a a36503387037b9c40b1f54debeed46e1 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.RNA-Seq.chimeric.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.chimeric.gdc_realn.bam 26768539 BAM chimeric harmonized CPTAC3 deb7e3eb-e397-4f71-83c9-b0024aa123b7 2359d5c2ae5b46b466b9f9009b3ae2e3 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.RNA-Seq.genomic.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.genomic.gdc_realn.bam 9185614731 BAM genomic harmonized CPTAC3 8a30910a-d091-48f5-9e62-bba53e345ae6 f3866ae276b113ad4e609a2b269a7a87 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.RNA-Seq.genomic.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.genomic.gdc_realn.bam 7323439249 BAM genomic harmonized CPTAC3 f43bd82c-94bf-42a7-95f7-1dbf10139938 9781f9aab4a97503fac761e0f692b122 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.RNA-Seq.S15_L004_R1.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3964127226 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 80bee658-8280-48cb-9ace-c7a990192093 caf1af1c39d580c4175c8e410272cc32 {"aliquot_tag": "ALQ_f88d10a5", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.RNA-Seq.S15_L004_R2.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4270849254 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 8ebfb07d-48ff-4371-a25a-d32d0acda130 5a5a7351f8be4dbd849d1488c6359c68 {"aliquot_tag": "ALQ_f88d10a5", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.RNA-Seq.S1_L001_R1.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R1_001.fastq.gz 3401781752 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 c5e03418-2572-4583-995b-9f5d154a3c5b bdce6159c7d1321f76cd53ddbc2dece8 {"aliquot_tag": "ALQ_da12d124", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.RNA-Seq.S1_L001_R2.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R2_001.fastq.gz 3664390440 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 160068e2-67b7-400f-9626-5cc7f21ac002 12811d7295a344183a4332ce3d0d0e8f {"aliquot_tag": "ALQ_da12d124", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.RNA-Seq.transcriptome.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.transcriptome.gdc_realn.bam 10742569675 BAM transcriptome harmonized CPTAC3 810bfaec-273c-4b1d-9ca1-3ef6470fafd2 1f473ee433e7028498b83179beebaa69 {"aliquot_tag": "ALQ_f88d10a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.RNA-Seq.transcriptome.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.transcriptome.gdc_realn.bam 9008398539 BAM transcriptome harmonized CPTAC3 bbaea97c-0ce1-4e9f-9e19-0d6ed35e1410 83f8fe5a9c3b172df89af541683d4b43 {"aliquot_tag": "ALQ_da12d124", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.WGS.A C3L-00923 LSCC WGS tissue_normal CPT0063440006 CPT0063440006.WholeGenome.RP-1303.bam 63456923319 BAM submitted_aligned CPTAC3 2746a3e8-ca4b-48b0-8fd2-34e1fe7e306d 2e4046edfc4eaf229767854457aba989 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.WGS.A.hg38 C3L-00923 LSCC WGS tissue_normal CPT0063440006 152edad9-88f9-4902-b4b5-259a03f52797_wgs_gdc_realn.bam 94028001435 BAM harmonized CPTAC3 52213dc3-dfbc-460a-95be-341b26d47b64 79b56fdec45cc74b11f95410662f52a3 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.WGS.N C3L-00923 LSCC WGS blood_normal CPT0065260002 CPT0065260002.WholeGenome.RP-1303.bam 60712966354 BAM submitted_aligned CPTAC3 6bd776b2-b69e-44a2-9f5e-4a60b22a8967 af58b54c55227dad3cdc1ead758b7138 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00923.WGS.N.hg38 C3L-00923 LSCC WGS blood_normal CPT0065260002 d3a17aae-7ccc-4e62-b6f9-7a7f0bfb20eb_gdc_realn.bam 92854181272 BAM harmonized CPTAC3 b4357651-c5f4-4003-a4e5-a7833f5b82eb d8e21c77eb171e53033948de2e9e9151 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00923.WGS.T C3L-00923 LSCC WGS tumor CPT0063430009 CPT0063430009.WholeGenome.RP-1303.bam 70514493202 BAM submitted_aligned CPTAC3 07c690fb-0cce-4785-adee-af98df8caaed 657e801bc2c50ed9ab2761238c91a856 {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.WGS.T.hg38 C3L-00923 LSCC WGS tumor CPT0063430009 4fe1aac3-4bf0-4ceb-a371-c129d5fac28d_gdc_realn.bam 105578059870 BAM harmonized CPTAC3 19b0cf04-990a-4dd4-ab3d-2ee864f209db 31784a056b91d994f322accfc1d00bd7 {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.WXS.A C3L-00923 LSCC WXS tissue_normal CPT0063440006 CPT0063440006.WholeExome.RP-1303.bam 32470650022 BAM submitted_aligned CPTAC3 c4932b2e-d4e7-4f29-98fd-5607e6558de6 19da042da315a4e9a39dc1f6fa7a6ec1 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.WXS.A.hg38 C3L-00923 LSCC WXS tissue_normal CPT0063440006 152edad9-88f9-4902-b4b5-259a03f52797_wxs_gdc_realn.bam 43482022374 BAM harmonized CPTAC3 07a69b64-a3fe-4e58-b7fc-8fa6276b2c36 90a534d984f18e22fa96bf35c6f9f8d2 {"aliquot_tag": "ALQ_68320d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00923.WXS.N C3L-00923 LSCC WXS blood_normal CPT0065260002 CPT0065260002.WholeExome.RP-1303.bam 29924878688 BAM submitted_aligned CPTAC3 58e7cf1b-498c-404d-aaba-e70e290c7025 1993ec200cf00791b16f61676bc6fcb5 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00923.WXS.N.hg38 C3L-00923 LSCC WXS blood_normal CPT0065260002 d3a17aae-7ccc-4e62-b6f9-7a7f0bfb20eb_gdc_realn.bam 40082091718 BAM harmonized CPTAC3 4a059854-cff6-4dba-a57b-83aed6d94595 b99b8375fa566652c335174c17adf499 {"aliquot_tag": "ALQ_a0164c6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00923.WXS.T C3L-00923 LSCC WXS tumor CPT0063430009 CPT0063430009.WholeExome.RP-1303.bam 37586024746 BAM submitted_aligned CPTAC3 72fe54a2-974b-49d6-9a27-1193a8f93632 7b2352b10f5f19325c5afe009e38ca4e {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00923.WXS.T.hg38 C3L-00923 LSCC WXS tumor CPT0063430009 4fe1aac3-4bf0-4ceb-a371-c129d5fac28d_gdc_realn.bam 51157216279 BAM harmonized CPTAC3 a3368d17-8c03-4876-96e1-63c5e1154323 2e21285e719e72db758e175a4d72fe3d {"aliquot_tag": "ALQ_4aadccb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.MethArray.Green.A C3L-00927 LSCC Methylation_Array tissue_normal CPT0063500006 203219640133_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7a471876-4e26-4b2d-a164-246c8c153f4f b315960a5a74ed9e65c852ff42d35876 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.MethArray.Green.T C3L-00927 LSCC Methylation_Array tumor CPT0063480009 202163550072_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 56184550-b133-4e3f-875e-d89832fef4af cb26a163b2d2eee6129ff056b137769d {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.MethArray.Red.A C3L-00927 LSCC Methylation_Array tissue_normal CPT0063500006 203219640133_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 9ee2e934-65e1-46ad-bd5d-264e1c1f8f11 039f17486d5a1413135774b41288b39e {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.MethArray.Red.T C3L-00927 LSCC Methylation_Array tumor CPT0063480009 202163550072_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 44cec8f0-c620-4cb7-beb5-ffd96173d4c4 d091e658efe1771b3e14e654b12999b4 {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.miRNA-Seq.A.hg38 C3L-00927 LSCC miRNA-Seq tissue_normal CPT0063500009 99566db1-261b-4899-b59b-ca9b8ab8ae04_mirnaseq_gdc_realn.bam 253085620 BAM harmonized CPTAC3 57cab561-1806-40c8-801c-6a67d30fcd31 a25cf7d2f5562fe9ba63f3ed8cc2ed4e {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.miRNA-Seq.S13_L003_R1.T C3L-00927 LSCC miRNA-Seq tumor CPT0063480006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTCCGC_S13_L003_R1_001.unaln.bam 212061135 BAM S13_L003_R1 submitted_unaligned CPTAC3 a8c94c61-da8b-40c1-8a14-9566724ce8d8 6e02913d3b2f53ca113c3e9bc32a19d1 {"aliquot_tag": "ALQ_adc2e035", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.miRNA-Seq.S39_L006_R1.A C3L-00927 LSCC miRNA-Seq tissue_normal CPT0063500009 181113_UNC31-K00269_0164_AH23NNBBXY_ATGTCA_S39_L006_R1_001.unaln.bam 223769765 BAM S39_L006_R1 submitted_unaligned CPTAC3 9ae9b91f-8da4-431c-b2bb-21c8ea065ae8 1f819645f2c4fd76e11e4134d6c97d89 {"aliquot_tag": "ALQ_c65165c0", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.miRNA-Seq.T.hg38 C3L-00927 LSCC miRNA-Seq tumor CPT0063480006 1b177121-ace3-409b-9a8f-2867ebb86c20_mirnaseq_gdc_realn.bam 233035781 BAM harmonized CPTAC3 99053ce8-73ed-48b6-bed3-13caa144b12d e4e1b74b449de3edfbc5d3a240a311ec {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.RNA-Seq.chimeric.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.chimeric.gdc_realn.bam 39049047 BAM chimeric harmonized CPTAC3 339e48ac-e51b-4a2c-a91d-5aa6d09befe5 a410ba42bd08c7582530503414d08057 {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.RNA-Seq.chimeric.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.chimeric.gdc_realn.bam 30853424 BAM chimeric harmonized CPTAC3 59ab7776-2eea-4759-bac7-e8c38bdc9658 6b14aed3ca34eaa8300f54e92a4009df {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.RNA-Seq.genomic.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.genomic.gdc_realn.bam 8952118275 BAM genomic harmonized CPTAC3 44954497-1630-4392-b613-579d65f0fa1b 0969c4d20abcf80f581a9d70fb603441 {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.RNA-Seq.genomic.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.genomic.gdc_realn.bam 7871752266 BAM genomic harmonized CPTAC3 1f6cb7cb-c0b0-40cb-bd7d-fcac050a27b0 11a22f2b6df04c0aa1bfc19a3b852748 {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.RNA-Seq.S13_L004_R1.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4086185678 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 d59edba7-cf24-4806-a08e-2b737b0860d6 5b0b0fd4c2be303ec11a7b8a1f5ced1b {"aliquot_tag": "ALQ_c65165c0", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.RNA-Seq.S13_L004_R2.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4470037308 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 114a806a-0150-4c9f-a94d-e1176503c96a 96d99c9c21e4ff76d1d9a29a48fce88c {"aliquot_tag": "ALQ_c65165c0", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.RNA-Seq.S4_L001_R1.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3710780116 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 45c4199e-9f5e-4059-a802-a1c6e62655e0 f7f2465b974e14f97bb3626628783812 {"aliquot_tag": "ALQ_adc2e035", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.RNA-Seq.S4_L001_R2.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3999654743 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 aed7d802-d0a4-4422-a402-c0ea057d51bc 789857a3956d305a6cee021ae0a10eb4 {"aliquot_tag": "ALQ_adc2e035", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.RNA-Seq.transcriptome.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.transcriptome.gdc_realn.bam 11223351816 BAM transcriptome harmonized CPTAC3 39235af9-f191-4760-aeba-b8783fdb3581 875f64dc28b8342125bb400b4b6c4a39 {"aliquot_tag": "ALQ_c65165c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.RNA-Seq.transcriptome.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.transcriptome.gdc_realn.bam 11412343519 BAM transcriptome harmonized CPTAC3 c905ac3e-fd59-439e-bbee-96a6190f6868 ef0ad316790468be61317cebce0cdad8 {"aliquot_tag": "ALQ_adc2e035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.WGS.A C3L-00927 LSCC WGS tissue_normal CPT0063500006 CPT0063500006.WholeGenome.RP-1303.bam 70608489871 BAM submitted_aligned CPTAC3 04e5bcd9-6e98-4ca4-9917-f1eb712e5595 0a7b88a7f3b9c3154843e1738c7fbeb0 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.WGS.A.hg38 C3L-00927 LSCC WGS tissue_normal CPT0063500006 5b5b4d6b-ebe0-4b3b-ad1e-4b99c11dfa76_wgs_gdc_realn.bam 102599646323 BAM harmonized CPTAC3 83134601-004d-441e-8b34-d4522d8bcdd4 43c4b268e57a1198bea85aaddbc209bb {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.WGS.N C3L-00927 LSCC WGS blood_normal CPT0065270002 CPT0065270002.WholeGenome.RP-1303.bam 89837184712 BAM submitted_aligned CPTAC3 44ffa5b8-67c4-4ec1-9558-725f5f0bf808 c1b2f011e508dc093f901d1d8fa5698e {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00927.WGS.N.hg38 C3L-00927 LSCC WGS blood_normal CPT0065270002 b41c0aec-0ac2-4394-843c-def04c66212e_gdc_realn.bam 139557671252 BAM harmonized CPTAC3 5f20d768-3910-41ba-916c-9dae17838d8a 9188cf9819398da868b865ecb517ff6d {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00927.WGS.T C3L-00927 LSCC WGS tumor CPT0063480009 CPT0063480009.WholeGenome.RP-1303.bam 73789438687 BAM submitted_aligned CPTAC3 3cb31f39-3919-4896-a587-2168747abfab bd03bb8e8852a54569d522d91b07b7cb {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.WGS.T.hg38 C3L-00927 LSCC WGS tumor CPT0063480009 57bdf35e-fa6d-4379-b4bc-1baa1e07fec3_gdc_realn.bam 110977423149 BAM harmonized CPTAC3 f270ceaa-bb11-460c-83ac-7085f601fc48 6479d3ff57603c80ff045483a7196fc1 {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.WXS.A C3L-00927 LSCC WXS tissue_normal CPT0063500006 CPT0063500006.WholeExome.RP-1303.bam 24225516433 BAM submitted_aligned CPTAC3 293f6d94-479c-4c90-945a-a9b8e3a7ef33 6db367ebb034f07bf2568dfd9665e4a9 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.WXS.A.hg38 C3L-00927 LSCC WXS tissue_normal CPT0063500006 5b5b4d6b-ebe0-4b3b-ad1e-4b99c11dfa76_wxs_gdc_realn.bam 32157948112 BAM harmonized CPTAC3 2513958e-cacf-43bb-8952-153456239ee5 3da466e94409eeef3a849109d929e041 {"aliquot_tag": "ALQ_56ee7851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00927.WXS.N C3L-00927 LSCC WXS blood_normal CPT0065270002 CPT0065270002.WholeExome.RP-1303.bam 37562201584 BAM submitted_aligned CPTAC3 a055f400-f271-4190-b936-5e4114ede20c 295ac2bae23bd1b09f69ef16d81c74b4 {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00927.WXS.N.hg38 C3L-00927 LSCC WXS blood_normal CPT0065270002 b41c0aec-0ac2-4394-843c-def04c66212e_gdc_realn.bam 52274879999 BAM harmonized CPTAC3 ca299aae-7e7f-4ea7-a08f-9025151ccbd4 917e25a7e74d5ca5030e2d75a8646491 {"aliquot_tag": "ALQ_9d7665da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00927.WXS.T C3L-00927 LSCC WXS tumor CPT0063480009 CPT0063480009.WholeExome.RP-1303.bam 21545119640 BAM submitted_aligned CPTAC3 c08e4df5-08f4-4b92-9e1d-3e6f240890a4 d0cb365ad41c5fe9f67491c4d01da84c {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00927.WXS.T.hg38 C3L-00927 LSCC WXS tumor CPT0063480009 57bdf35e-fa6d-4379-b4bc-1baa1e07fec3_gdc_realn.bam 30246060444 BAM harmonized CPTAC3 b93fc4ee-6d67-44f3-a9ff-ecd30aa1eb76 3b5edfec5995ee98a08e94eff3402c14 {"aliquot_tag": "ALQ_3d7dfda4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.MethArray.Green.A C3L-00928 PDA Methylation_Array tissue_normal CPT0063580006 203561620050_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2de87158-0799-4fe4-9e5e-15634812ea4d 46409bc332d2bef42e425a7b61fd2cba {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00928.MethArray.Green.T C3L-00928 PDA Methylation_Array tumor CPT0063570009 202176300001_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ba3ab4e3-4347-4cc6-a941-0c59805b0185 8bd5148b36aacde10fbb84d501df9d5d {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.MethArray.Red.A C3L-00928 PDA Methylation_Array tissue_normal CPT0063580006 203561620050_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 30cc2e49-d431-43fb-8671-013def0fd51a 78c3d6ef8b4ba154122d9dca6cb0a0c3 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00928.MethArray.Red.T C3L-00928 PDA Methylation_Array tumor CPT0063570009 202176300001_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 24bb6c8b-f717-4a66-8388-5d6f6fd9fa08 e2667816950ffb95323b34a54daf61eb {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.miRNA-Seq.S12_L003_R1.T C3L-00928 PDA miRNA-Seq tumor CPT0063570006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGAAA_S12_L003_R1_001.unaln.bam 326389033 BAM S12_L003_R1 submitted_unaligned CPTAC3 3713d65b-aa72-4e81-bc17-dcba312e3b9a 1374d0c4bdeebc3d2a7e9b2c33627b52 {"aliquot_tag": "ALQ_e4cea441", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.miRNA-Seq.T.hg38 C3L-00928 PDA miRNA-Seq tumor CPT0063570006 edc64397-dd53-46a9-a3db-b0fc2853e9df_mirnaseq_gdc_realn.bam 362867737 BAM harmonized CPTAC3 cf12de48-ec42-4d2c-8329-301b9c760e06 d09f39223714648abe2070dacb994928 {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.RNA-Seq.chimeric.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.chimeric.gdc_realn.bam 53456513 BAM chimeric harmonized CPTAC3 feefeb71-0102-4985-8154-f4a7d5ae3889 7257b26e8202af3b78c5906d2aa0cf41 {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.genomic.gdc_realn.bam 6476440452 BAM genomic harmonized CPTAC3 e5ecefe4-349b-41e0-a282-fbdb146b2d41 7fa7117870fb628705ff798e943f8b5d {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.RNA-Seq.S5_L008_R1.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R1_001.fastq.gz 3117828591 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 b8776601-597c-4419-ab0e-c770b20442a4 7d0ddde0d011d7963de6a1ac5c370e42 {"aliquot_tag": "ALQ_e4cea441", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.RNA-Seq.S5_L008_R2.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R2_001.fastq.gz 3383277976 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 34286639-b4c7-4600-9fe2-49fe02c4fd10 e219d6410d48ff238d7bad7a92731fea {"aliquot_tag": "ALQ_e4cea441", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.RNA-Seq.transcriptome.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.transcriptome.gdc_realn.bam 8552602745 BAM transcriptome harmonized CPTAC3 44e17d16-a8b0-4c9b-bc3b-8884d8dbee84 c9a0c63606c61b09b7a9c2828c95e862 {"aliquot_tag": "ALQ_e4cea441", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.Targeted.T C3L-00928 PDA Targeted_Sequencing tumor CPT0063570009_1 CPT0063570009_1.CustomSelection.RP-1303.PDO-18786.bam 4040420667 BAM submitted_aligned CPTAC3 04602530-f401-4c21-aa13-79f3b667507c 2c688204e4118def99033ca03d4f31dd {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.Targeted.T.hg38 C3L-00928 PDA Targeted_Sequencing tumor CPT0063570009_1 bd1adbbd-9936-40c2-8a9e-83f1b1078106_targetedsequencing_gdc_realn.bam 5536450301 BAM harmonized CPTAC3 9f61c2ae-c71b-4e10-bda8-7b77e29ab4d9 6b6639ae3e86292f685671efe4d4c165 {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.WGS.A C3L-00928 PDA WGS tissue_normal CPT0063580006 CPT0063580006.WholeGenome.RP-1303.bam 63678850370 BAM submitted_aligned CPTAC3 5d117eb3-4e6a-4f9e-b484-ebdc182ff994 79b77a8f19fa8e1ef33876508e2de615 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00928.WGS.A.hg38 C3L-00928 PDA WGS tissue_normal CPT0063580006 3bddfbe5-3fe9-4c16-9d0d-441b180f9f2e_wgs_gdc_realn.bam 93160451048 BAM harmonized CPTAC3 43b1561d-30ba-4d8f-ad12-d06a7ae196ea 63ede544e0f9ca4bab1d1c23e7266f50 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00928.WGS.N C3L-00928 PDA WGS blood_normal CPT0065280002 CPT0065280002.WholeGenome.RP-1303.bam 80327205919 BAM submitted_aligned CPTAC3 6038c351-aaca-490b-a60b-27e85b1e8f3a 83c4fb6b3d0bb8ee1023f27dee186e6f {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00928.WGS.N.hg38 C3L-00928 PDA WGS blood_normal CPT0065280002 4d28d79b-7cbb-4ad9-af4c-13e4de70ebeb_gdc_realn.bam 120097649872 BAM harmonized CPTAC3 e2ead13a-53f6-48a4-beae-6eb532cddbff e5490dbd2e7d35075db2fdf64bec2984 {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00928.WGS.T C3L-00928 PDA WGS tumor CPT0063570009 CPT0063570009.WholeGenome.RP-1303.bam 72981546055 BAM submitted_aligned CPTAC3 5f9521f6-b68d-49e7-a0e8-c10e183f7a78 22d2f7484cfedf77884a9bea86b09000 {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.WGS.T.hg38 C3L-00928 PDA WGS tumor CPT0063570009 0b9a91bc-a425-4324-94f9-a5b3bb4078a6_gdc_realn.bam 107491950009 BAM harmonized CPTAC3 e793f13c-835b-46f7-8d5c-87f4f7759c53 23700338f4c171b3c5529d6f6d0e8286 {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.WXS.A C3L-00928 PDA WXS tissue_normal CPT0063580006 CPT0063580006.WholeExome.RP-1303.bam 34657522317 BAM submitted_aligned CPTAC3 95743e57-32e4-4577-b319-6c4cc4fc8a3a 21ce46fe94bcd96350016cae67ae1fb4 {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00928.WXS.A.hg38 C3L-00928 PDA WXS tissue_normal CPT0063580006 3bddfbe5-3fe9-4c16-9d0d-441b180f9f2e_wxs_gdc_realn.bam 45961452219 BAM harmonized CPTAC3 fffc64ec-180f-4b30-bb1a-e4e4d3a37d3e 66d7ac289238f57547f01010542d52bb {"aliquot_tag": "ALQ_669e3390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00928.WXS.N C3L-00928 PDA WXS blood_normal CPT0065280002 CPT0065280002.WholeExome.RP-1303.bam 33777986717 BAM submitted_aligned CPTAC3 5d36c6ff-97ef-4d43-bebd-61663d23d046 2592ceff4a36528e728f572d735c506d {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00928.WXS.N.hg38 C3L-00928 PDA WXS blood_normal CPT0065280002 4d28d79b-7cbb-4ad9-af4c-13e4de70ebeb_gdc_realn.bam 45789204493 BAM harmonized CPTAC3 459d0ef1-4d17-4aaa-9555-6c45cd62f3ca 3a560e3c9300b572105a32f16f4e3d4c {"aliquot_tag": "ALQ_1f26f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00928.WXS.T C3L-00928 PDA WXS tumor CPT0063570009_1 CPT0063570009_1.WholeExome.RP-1303.bam 63574954251 BAM submitted_aligned CPTAC3 1440e66f-6321-445d-9412-3f8ac0d35cff fa9de49173ee6b6453faa2ecacf6bde6 {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.WXS.T C3L-00928 PDA WXS tumor CPT0063570009 CPT0063570009.WholeExome.RP-1303.bam 35078491175 BAM submitted_aligned CPTAC3 f4f416a9-64ae-4d0c-b804-3bfa9288780f 6bd1cc6ee38d6e0b4bc2b6659f56706b {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.WXS.T.hg38 C3L-00928 PDA WXS tumor CPT0063570009 0b9a91bc-a425-4324-94f9-a5b3bb4078a6_gdc_realn.bam 48971675541 BAM harmonized CPTAC3 4b6f2f9b-f555-4a4e-92be-24f26bbe98ee 22377c27070a58f6792e97ca9ac406de {"aliquot_tag": "ALQ_7471b9d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00928.WXS.T.hg38 C3L-00928 PDA WXS tumor CPT0063570009_1 bd1adbbd-9936-40c2-8a9e-83f1b1078106_wxs_gdc_realn.bam 88118093845 BAM harmonized CPTAC3 c4e455fe-3215-4d18-bd8a-16787b11fc04 d8f07fead4f61714dc8ada5064a5fae5 {"aliquot_tag": "ALQ_1ea1e918", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.MethArray.Green.T C3L-00932 UCEC Methylation_Array tumor CPT0027120009 202178770079_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d6b0ac87-a0f4-4a64-9827-b3df7f28959d 3b3f15088d4f4891aab80c1568710f49 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.MethArray.Red.T C3L-00932 UCEC Methylation_Array tumor CPT0027120009 202178770079_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 2c844208-f405-42f2-b1cd-aca9f9b6009a 0155c001b902490b6cbaaa9276fb2d1b {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.miRNA-Seq.A.hg38 C3L-00932 UCEC miRNA-Seq tissue_normal CPT0027130006 344ad7cb-ad0d-4942-84b4-bb4722511c8b_mirnaseq_gdc_realn.bam 270019014 BAM harmonized CPTAC3 26444362-5688-4649-9d12-8120a01e8968 4b4d065b2043785db76bd02a98c10aa4 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.miRNA-Seq.S4_L001_R1.T C3L-00932 UCEC miRNA-Seq tumor CPT0027120006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATTCCT_S4_L001_R1_001.unaln.bam 317613650 BAM S4_L001_R1 submitted_unaligned CPTAC3 19337004-d8a5-4423-8bd5-102b04bd5f46 ec1c94c6f5ffb8c44356c92eefbf58fa {"aliquot_tag": "ALQ_c7ba43ce", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.miRNA-Seq.S9_L006_R1.A C3L-00932 UCEC miRNA-Seq tissue_normal CPT0027130006 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L006_R1_001.unaln.bam 242042636 BAM S9_L006_R1 submitted_unaligned CPTAC3 d067ea26-6f5b-4756-9be0-1b648d1b8067 d192559a1eaa876d963ab9095b59ef8d {"aliquot_tag": "ALQ_fada6a7e", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.miRNA-Seq.T.hg38 C3L-00932 UCEC miRNA-Seq tumor CPT0027120006 cbc4e222-8b77-43d9-8991-2ad9365e88a9_mirnaseq_gdc_realn.bam 353491131 BAM harmonized CPTAC3 f67c082b-f590-494e-9b4e-69cdecb64684 440682db7c0d526257559a24dab72ca5 {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.chimeric.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.chimeric.gdc_realn.bam 121751845 BAM chimeric harmonized CPTAC3 80237dd7-1563-4577-8f65-1272e8441be9 cef1521ee5207f8072a1491230d71f07 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.RNA-Seq.chimeric.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.chimeric.gdc_realn.bam 68129413 BAM chimeric harmonized CPTAC3 7e934827-ab90-4444-85c1-3e49c4150fb2 1da24c76f8b054beaddcd837d3802b0e {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.chimeric.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.chimeric.gdc_realn.bam 295720641 BAM chimeric harmonized CPTAC3 3dcea495-8df3-49c2-a2d5-da3638a68b9d f7ec8d209bf46ac5eeb479851fb0a393 {"aliquot_tag": "ALQ_d69e23cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.genomic.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.genomic.gdc_realn.bam 8239682827 BAM genomic harmonized CPTAC3 8725e3cd-0431-4c02-8670-d7717104d239 5eab7ba73c654aeb7ac712e9a599a3c9 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.RNA-Seq.genomic.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.genomic.gdc_realn.bam 6678600354 BAM genomic harmonized CPTAC3 f4ffb295-e382-4fe3-ba99-aae10d3130bb 16a23bc257c6a455fb896abc6881963c {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.genomic.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.genomic.gdc_realn.bam 13402278524 BAM genomic harmonized CPTAC3 f1146142-d36e-4752-ac19-acf6ef70bfe2 fd7de9ffc2e1a0e8387702310fe8c8be {"aliquot_tag": "ALQ_d69e23cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.S13_L004_R1.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 3180273949 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 dd5354a9-7c2a-48a3-8381-96ed8ee9ea08 eb18f81d5c1f76a728419059e4f50067 {"aliquot_tag": "ALQ_c7ba43ce", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.S13_L004_R2.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 3523214854 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 14fc8a67-8464-475b-9c69-0ab40757f0d7 7391742e9e5224d3133e6ffb940d1c1d {"aliquot_tag": "ALQ_c7ba43ce", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.S1_L001_R1.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R1_001.fastq.gz 3903358995 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 db54b077-a421-4528-9067-5fdc52ee5366 d0abb28786e6e4c58e724c1f62539bdd {"aliquot_tag": "ALQ_fada6a7e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.RNA-Seq.S1_L001_R2.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R2_001.fastq.gz 4432981778 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 1d2625d3-cb72-4722-aee4-b522a30139e0 c913df384d4455f3379e6a6146ddb28e {"aliquot_tag": "ALQ_fada6a7e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.RNA-Seq.S74_R1.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R1_001.fastq.gz 8404847400 FASTQ S74_R1 submitted_unaligned CPTAC3 34d82b78-5f6f-46cd-aae7-ef8249ddbd81 e880eb8bd8c202aef6035803e3119eae {"aliquot_tag": "ALQ_d69e23cd", "sample": "S74", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.S74_R2.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R2_001.fastq.gz 8495375424 FASTQ S74_R2 submitted_unaligned CPTAC3 aae7f0ef-68aa-4bd1-86da-060e264ba3ab d643bc71eb36240b2fdc7a4bf98c3937 {"aliquot_tag": "ALQ_d69e23cd", "sample": "S74", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.transcriptome.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.transcriptome.gdc_realn.bam 9665728375 BAM transcriptome harmonized CPTAC3 a2c7f35a-1010-49ad-9f2c-bf7ec4bc2b9d 9b814e067d86f0f2f2385b2e3c0b2611 {"aliquot_tag": "ALQ_fada6a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.RNA-Seq.transcriptome.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.transcriptome.gdc_realn.bam 8913668661 BAM transcriptome harmonized CPTAC3 06212c20-4c1f-4032-955c-9ef86960e54e 5b348ed747d48782a4001feba33b9156 {"aliquot_tag": "ALQ_c7ba43ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.RNA-Seq.transcriptome.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.transcriptome.gdc_realn.bam 7898797823 BAM transcriptome harmonized CPTAC3 25be226f-4468-4dc4-ac4c-428cd91a91cb 8406921bb15497bb23229ffa6cf91c90 {"aliquot_tag": "ALQ_d69e23cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.WGS.A C3L-00932 UCEC WGS tissue_normal CPT0027130009 CPT0027130009.WholeGenome.RP-1303.bam 56354902148 BAM submitted_aligned CPTAC3 03167521-c05a-4895-b1e0-254f06812837 1f5a6d5b7d7f9a3c00cebc4d902b98e3 {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.WGS.A.hg38 C3L-00932 UCEC WGS tissue_normal CPT0027130009 b79e342b-9467-45ba-8e99-d467ddfc6747_wgs_gdc_realn.bam 81594243258 BAM harmonized CPTAC3 c111a067-1178-4466-a0c4-0c3dec761db2 6385fc88d8ed2d7435a43ae960705083 {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.WGS.N C3L-00932 UCEC WGS blood_normal CPT0027180002 CPT0027180002.WholeGenome.RP-1303.bam 62695472060 BAM submitted_aligned CPTAC3 2180b05a-5913-4416-8645-6b802ab705f0 679a012766a12849307ef8c14929e6b1 {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00932.WGS.N.hg38 C3L-00932 UCEC WGS blood_normal CPT0027180002 2b46f8aa-89b0-472b-969d-2ddd7b6266a5_gdc_realn.bam 91245920520 BAM harmonized CPTAC3 81b1a4f5-dcab-4985-bdda-f1dfbca21017 6474413338f2ba1e01412bbab3d5a26a {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00932.WGS.T C3L-00932 UCEC WGS tumor CPT0027120009 CPT0027120009.WholeGenome.RP-1303.bam 76435662176 BAM submitted_aligned CPTAC3 e3cd4385-ef9b-4cce-acc2-626d01333474 61f6368bde0e1cd184dca6cb36ec7ec6 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.WGS.T.hg38 C3L-00932 UCEC WGS tumor CPT0027120009 6fea7283-a05f-4452-bcfc-4489af212782_gdc_realn.bam 111642907072 BAM harmonized CPTAC3 c1e1965b-85d8-40d2-a084-afa2886d1da3 9405ad432ebf1d84a3a9312c2304b2d7 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.WXS.A C3L-00932 UCEC WXS tissue_normal CPT0027130009 CPT0027130009.WholeExome.RP-1303.bam 30486399167 BAM submitted_aligned CPTAC3 f8ec6690-b460-47e8-b70f-fd66538978c3 b7aa8a78041d67c93e9aff7fc32eeab4 {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.WXS.A.hg38 C3L-00932 UCEC WXS tissue_normal CPT0027130009 b79e342b-9467-45ba-8e99-d467ddfc6747_wxs_gdc_realn.bam 41274794428 BAM harmonized CPTAC3 69163639-0ded-4218-a19b-3f03308f5c97 625d0e7a62600e2e5f4c7e3d68b89f7d {"aliquot_tag": "ALQ_6a6577ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00932.WXS.N C3L-00932 UCEC WXS blood_normal CPT0027180002 CPT0027180002.WholeExome.RP-1303.bam 28606181245 BAM submitted_aligned CPTAC3 22a61fbf-a8af-4360-8ddd-2146432a5ac5 417bf0f397e392b0c458b631a73680c7 {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00932.WXS.N.hg38 C3L-00932 UCEC WXS blood_normal CPT0027180002 2b46f8aa-89b0-472b-969d-2ddd7b6266a5_gdc_realn.bam 38893377530 BAM harmonized CPTAC3 727b0893-cc84-4b7e-b139-ea00f0a60d42 29c5f88374140222b72f878b0d1a584b {"aliquot_tag": "ALQ_8a679f76", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00932.WXS.T C3L-00932 UCEC WXS tumor CPT0027120009 CPT0027120009.WholeExome.RP-1303.bam 25374416872 BAM submitted_aligned CPTAC3 3fb1df82-1f6e-4e56-84c2-3b56d905ac84 537a43a88c7f844fefe4a441e913ab84 {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00932.WXS.T.hg38 C3L-00932 UCEC WXS tumor CPT0027120009 6fea7283-a05f-4452-bcfc-4489af212782_gdc_realn.bam 34576735449 BAM harmonized CPTAC3 9dbeb6c5-ec18-4cda-b9a0-170ac1f547ac b249abf99c47051f686eface034a1c8e {"aliquot_tag": "ALQ_57055e5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.MethArray.Green.T C3L-00938 UCEC Methylation_Array tumor CPT0016260006 202184990066_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1adc7222-b0b2-4258-9cb6-1229f5ff685b df63391128f3dc2256046d466b3b13d1 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.MethArray.Red.T C3L-00938 UCEC Methylation_Array tumor CPT0016260006 202184990066_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 4efbbc9b-59b1-433b-9744-a7f055a71d53 0f731b46fe07d2b422d868bd830d2403 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.miRNA-Seq.S32_L002_R1.T C3L-00938 UCEC miRNA-Seq tumor CPT0016260009 180924_UNC31-K00269_0154_AHWTMLBBXX_CTCAGA_S32_L002_R1_001.unaln.bam 307830642 BAM S32_L002_R1 submitted_unaligned CPTAC3 ef1cfd7c-3e08-4cb3-8321-2927e3f0741e edf3db4a4042bb76abf044e7c5de9c7d {"aliquot_tag": "ALQ_ce98666", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.miRNA-Seq.T.hg38 C3L-00938 UCEC miRNA-Seq tumor CPT0016260009 dffd83fd-efde-4b43-9544-eb226f1c4186_mirnaseq_gdc_realn.bam 347228868 BAM harmonized CPTAC3 c0964842-3204-4180-9eed-223c597697f3 b500ca8c307d1f10509c25831b5bd5cd {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.chimeric.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.chimeric.gdc_realn.bam 54848196 BAM chimeric harmonized CPTAC3 ebf23fd0-5fd1-4a04-8af0-f777e1ca09b1 f541b5035b93b7d24eaac2905d8a38ec {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.chimeric.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.chimeric.gdc_realn.bam 207605213 BAM chimeric harmonized CPTAC3 5671c417-c941-41a4-8160-8f9397da3407 9b7531e9868b73bdd758c4721f5fb603 {"aliquot_tag": "ALQ_bd02b035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.genomic.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.genomic.gdc_realn.bam 7384677369 BAM genomic harmonized CPTAC3 4d42a9f7-c633-445a-922a-97dcca5f118d 2067df00570a1502fdf17b9b7d4e7f19 {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.genomic.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.genomic.gdc_realn.bam 9777313866 BAM genomic harmonized CPTAC3 942c2caa-277e-4d46-890d-1d4ee07ed79e 669e6a001eee062271ff0c734cf1d3fa {"aliquot_tag": "ALQ_bd02b035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.S2_R1.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R1_001.fastq.gz 6623175677 FASTQ S2_R1 submitted_unaligned CPTAC3 5dd1c5e5-3c23-4f23-af78-4352f0117659 7869b1643a8dfc599e8f56dbc7e46ef4 {"aliquot_tag": "ALQ_bd02b035", "sample": "S2", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.S2_R2.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R2_001.fastq.gz 6889280939 FASTQ S2_R2 submitted_unaligned CPTAC3 fa6757e1-5383-4cf1-997e-22520a884d18 311b4350733824c87ecf391290b85183 {"aliquot_tag": "ALQ_bd02b035", "sample": "S2", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.S3_L001_R1.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R1_001.fastq.gz 3539868300 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 893adafa-41f8-4469-9c19-4b3c91b82e20 a948e6ab716698a9f4663533687c1ad7 {"aliquot_tag": "ALQ_ce98666", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.S3_L001_R2.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R2_001.fastq.gz 3696913766 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 aafe7ff3-0502-4175-a4a9-887ae8c2ec5b 839cb9653b389fe1ffac5b9bbb0d27eb {"aliquot_tag": "ALQ_ce98666", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.transcriptome.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.transcriptome.gdc_realn.bam 10828986762 BAM transcriptome harmonized CPTAC3 afe2b31c-280f-4eb1-9a25-cd618ff5c0b0 43d518f9f8b6fb8afdf5cbfcfa2939b0 {"aliquot_tag": "ALQ_ce98666", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.RNA-Seq.transcriptome.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.transcriptome.gdc_realn.bam 5155121958 BAM transcriptome harmonized CPTAC3 666360c0-b2e5-4bc7-8a01-60a54cd7c6e7 bc864c3b0a5728f18354943d35ec7b39 {"aliquot_tag": "ALQ_bd02b035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.WGS.N C3L-00938 UCEC WGS blood_normal CPT0016330002 CPT0016330002.WholeGenome.RP-1303.bam 72234854172 BAM submitted_aligned CPTAC3 bbedd5fa-dc3f-4e76-91bc-01924c74d8e9 e4e1a4028572549a10ddb1c9ae1e9b9a {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00938.WGS.N.hg38 C3L-00938 UCEC WGS blood_normal CPT0016330002 354aacf4-4f9f-4177-8882-d3f996822ad9_gdc_realn.bam 105008388487 BAM harmonized CPTAC3 382e74bf-0a8c-439e-95c7-88d8d22024fc 038db377db1f2f1a497942e48aabdd21 {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00938.WGS.T C3L-00938 UCEC WGS tumor CPT0016260006 CPT0016260006.WholeGenome.RP-1303.bam 61957211213 BAM submitted_aligned CPTAC3 3f25525d-4230-4c07-8d73-73907f1d3dec d8ad87fb0178341dc62671f83a012402 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.WGS.T.hg38 C3L-00938 UCEC WGS tumor CPT0016260006 56a3cbdb-5dad-4d22-af0f-f56075c412b9_gdc_realn.bam 88926367833 BAM harmonized CPTAC3 e4e1ff6a-e89a-4351-969b-1d7c583f21f4 a2485a51f3cbe1cf2caba64a2b978fbb {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.WXS.N C3L-00938 UCEC WXS blood_normal CPT0016330002 CPT0016330002.WholeExome.RP-1303.bam 30362035027 BAM submitted_aligned CPTAC3 f39b8a04-7400-4564-a764-0ea82dc9495b 63cebe806e385838a5a48a70c0e9bab8 {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00938.WXS.N.hg38 C3L-00938 UCEC WXS blood_normal CPT0016330002 354aacf4-4f9f-4177-8882-d3f996822ad9_gdc_realn.bam 41929157127 BAM harmonized CPTAC3 98c830a5-8735-4f5f-812d-3e7f7c3aa514 c14deaf5525b552a2f54c151a10674c1 {"aliquot_tag": "ALQ_9887033b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00938.WXS.T C3L-00938 UCEC WXS tumor CPT0016260006 CPT0016260006.WholeExome.RP-1303.bam 23793668698 BAM submitted_aligned CPTAC3 332a85b8-bd0a-4610-9bc3-c19e9e7c7924 98defd9f5f62160351511e172742d1c4 {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00938.WXS.T.hg38 C3L-00938 UCEC WXS tumor CPT0016260006 56a3cbdb-5dad-4d22-af0f-f56075c412b9_gdc_realn.bam 32374048491 BAM harmonized CPTAC3 94e9963b-ecb8-490c-854c-2043f19224f1 b5a9c289bed5434d2646d8f2194dea9b {"aliquot_tag": "ALQ_9c569bf7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.MethArray.Green.T C3L-00942 UCEC Methylation_Array tumor CPT0016830006 202163550076_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6e416876-40b5-4313-83ab-c565de5dbf81 33c6bbd4535f6e4a0e6228026ed8f865 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.MethArray.Red.T C3L-00942 UCEC Methylation_Array tumor CPT0016830006 202163550076_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 1c434e2b-2dc1-495c-a882-b6669effd8e0 f3158e4ef6df75d5229e9621f3126d36 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.miRNA-Seq.S31_L002_R1.T C3L-00942 UCEC miRNA-Seq tumor CPT0016830009 180924_UNC31-K00269_0154_AHWTMLBBXX_GACGAC_S31_L002_R1_001.unaln.bam 206696570 BAM S31_L002_R1 submitted_unaligned CPTAC3 d4a5b4f8-3430-4899-b34d-44f0871a1b3e 9c7894a5ee3bd31b83f470e616f764a8 {"aliquot_tag": "ALQ_65922a70", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.miRNA-Seq.T.hg38 C3L-00942 UCEC miRNA-Seq tumor CPT0016830009 c92c29f2-7d8f-4e69-93f0-9b70035e1852_mirnaseq_gdc_realn.bam 230553897 BAM harmonized CPTAC3 642099d3-d13e-40a4-8f83-fb7fefa2f8fa 5f01a976eae785d908292405a72a2328 {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.chimeric.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.chimeric.gdc_realn.bam 59797038 BAM chimeric harmonized CPTAC3 4c06fc88-57f0-4704-b27c-3c8a3863a46d c727a146985af3eeb43815a979b59d7d {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.chimeric.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.chimeric.gdc_realn.bam 247514354 BAM chimeric harmonized CPTAC3 0b581312-6e69-4eed-80a4-ab576baa5191 e60fc701eea6f35d49dea831df408f4c {"aliquot_tag": "ALQ_9ec90482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.genomic.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.genomic.gdc_realn.bam 6378649257 BAM genomic harmonized CPTAC3 c6d643ec-26da-41e8-a5e4-672cb791ed9f 0d4b2b5cd4219e1f96b4adf7d5eaaf50 {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.genomic.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.genomic.gdc_realn.bam 9832406211 BAM genomic harmonized CPTAC3 8f11b9d5-71f5-47b4-87fe-1baf46ddefad 3799f86cfba8ccdef3320a8d141a3f40 {"aliquot_tag": "ALQ_9ec90482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.S14_L008_R1.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R1_001.fastq.gz 2896353667 FASTQ S14_L008_R1 submitted_unaligned CPTAC3 34b5b547-c104-4c3b-b809-8c5fc7bf841d 1ad17193bed47fd521691cdd5039d879 {"aliquot_tag": "ALQ_65922a70", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.S14_L008_R2.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R2_001.fastq.gz 3169457788 FASTQ S14_L008_R2 submitted_unaligned CPTAC3 54fe3f69-db4c-4bb1-bfe6-957aab9aaf4b e3ad151853b6a56504b10b014ee3bbe4 {"aliquot_tag": "ALQ_65922a70", "sample": "S14", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.S90_R1.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R1_001.fastq.gz 5974470498 FASTQ S90_R1 submitted_unaligned CPTAC3 c60ad6c9-1351-437e-943a-a9cd15498bb0 d6c4c360a49a1aa1354d5da8312ad7a4 {"aliquot_tag": "ALQ_9ec90482", "sample": "S90", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.S90_R2.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R2_001.fastq.gz 6247733754 FASTQ S90_R2 submitted_unaligned CPTAC3 ce02755a-7232-4c6f-a022-9db0389308c5 7c9005ed067e8f64d18789fa005b801a {"aliquot_tag": "ALQ_9ec90482", "sample": "S90", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.transcriptome.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.transcriptome.gdc_realn.bam 7517137242 BAM transcriptome harmonized CPTAC3 52f06d64-9236-4b15-8644-6479d2deeb15 a6692ac855c5012c06515edc0397b3dd {"aliquot_tag": "ALQ_65922a70", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.RNA-Seq.transcriptome.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.transcriptome.gdc_realn.bam 4125085670 BAM transcriptome harmonized CPTAC3 e37f60b9-63f1-4a6d-9752-f0876f6dc322 5c2ecd5519aa189a160947cb5be2a0c9 {"aliquot_tag": "ALQ_9ec90482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.WGS.N C3L-00942 UCEC WGS blood_normal CPT0016970001 CPT0016970001.WholeGenome.RP-1303.bam 94045928911 BAM submitted_aligned CPTAC3 699cb50e-8973-4018-b27f-e5ce28faf4c4 671945127ca0494db87ac9a84274d88a {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00942.WGS.N.hg38 C3L-00942 UCEC WGS blood_normal CPT0016970001 3bf4671c-36c5-4987-a7f4-7afefe6422cf_gdc_realn.bam 138875632087 BAM harmonized CPTAC3 e1b5b9a4-609d-4bb6-a61e-c0c9e499f9ef 88564a3c2759e1788fb02a580df25cb3 {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00942.WGS.T C3L-00942 UCEC WGS tumor CPT0016830006 CPT0016830006.WholeGenome.RP-1303.bam 76115022922 BAM submitted_aligned CPTAC3 6c9a46b8-8e19-48dc-baa2-4822c8d913a4 2ee0e72b196a2fe05c30898071969460 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.WGS.T.hg38 C3L-00942 UCEC WGS tumor CPT0016830006 c87a0a06-a7c7-46b7-acf9-42ee5469ff63_gdc_realn.bam 113548936344 BAM harmonized CPTAC3 b3f61b74-c4f8-4a05-883f-9e04a3b70cdb bad5d0e6cf2f4efc7e6ac332be26a9e5 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.WXS.N C3L-00942 UCEC WXS blood_normal CPT0016970001 CPT0016970001.WholeExome.RP-1303.bam 37461678280 BAM submitted_aligned CPTAC3 60bb0611-e14f-4042-b148-492cff530e9c 7f18746d40baf123b3c4fe012da9c22a {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00942.WXS.N.hg38 C3L-00942 UCEC WXS blood_normal CPT0016970001 3bf4671c-36c5-4987-a7f4-7afefe6422cf_gdc_realn.bam 51267355549 BAM harmonized CPTAC3 06ebf4f1-4419-4dc0-a0c5-cf71457d6008 69ad24bf7f4f2384d9dda3396323d20e {"aliquot_tag": "ALQ_5595d727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00942.WXS.T C3L-00942 UCEC WXS tumor CPT0016830006 CPT0016830006.WholeExome.RP-1303.bam 33122950311 BAM submitted_aligned CPTAC3 e4a34a68-cdb6-40b9-ac1b-a1328f72b67d 7763a3df8a07728bd25dbf776a854041 {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00942.WXS.T.hg38 C3L-00942 UCEC WXS tumor CPT0016830006 c87a0a06-a7c7-46b7-acf9-42ee5469ff63_gdc_realn.bam 44986333832 BAM harmonized CPTAC3 408ac551-237e-4ba3-8fe9-f9dc6c007ad6 e247926ebb6f502138c1fd038146637b {"aliquot_tag": "ALQ_f52d37e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00943.MethArray.Green.T C3L-00943 UCEC Methylation_Array tumor CPT0086090009 202234380058_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cee0a78f-fed7-4263-8758-90cd5b0ae19e 17e2c35d60c2285142ce2fb22c2011ce {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.MethArray.Red.T C3L-00943 UCEC Methylation_Array tumor CPT0086090009 202234380058_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 5627ddc3-7600-4858-a215-dbcb4b1bccdb 690a1326d272150b7c0ae8aa1f36023e {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.miRNA-Seq.S32_L008_R1.T C3L-00943 UCEC miRNA-Seq tumor CPT0086090006 180724_UNC32-K00270_0106_BHWK3MBBXX_GATCAG_S32_L008_R1_001.unaln.bam 255536402 BAM S32_L008_R1 submitted_unaligned CPTAC3 3c917f5b-8192-4e22-97d3-1ae1cd15285f 2d49a8d111dcb0d70d8fb01752e6b26a {"aliquot_tag": "ALQ_4c81b606", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.miRNA-Seq.T.hg38 C3L-00943 UCEC miRNA-Seq tumor CPT0086090006 07fdaf0d-a052-477e-ad56-a585a813b0c9_mirnaseq_gdc_realn.bam 276430120 BAM harmonized CPTAC3 8b3fe42a-3875-4754-b748-c84ed8d3c4db 2dcf6ccbb04c35baf02e816b2eed0309 {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.chimeric.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.chimeric.gdc_realn.bam 327480248 BAM chimeric harmonized CPTAC3 d3088620-dc05-4a60-a55f-baec5770e4f0 a6ffc6370dce0f3a6f47fdf897f86b8f {"aliquot_tag": "ALQ_6dd59dc4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.chimeric.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.chimeric.gdc_realn.bam 70305438 BAM chimeric harmonized CPTAC3 c721f5f5-cd6b-4d48-8be9-4d1e50eae3d9 df6ac955f904a79c477c80326002d106 {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.genomic.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.genomic.gdc_realn.bam 11251318137 BAM genomic harmonized CPTAC3 5e9e74e3-9d5c-4d02-8bbe-be948424c2cf 577b468e7a5c0636b2813f9466674700 {"aliquot_tag": "ALQ_6dd59dc4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.genomic.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.genomic.gdc_realn.bam 7145458617 BAM genomic harmonized CPTAC3 b2d8644b-9bf6-43a3-8285-e274b405f3f7 8bd11af06d6d4820142d41c1c57507ae {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.S80_R1.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R1_001.fastq.gz 7371117167 FASTQ S80_R1 submitted_unaligned CPTAC3 12c5191b-bf12-4fa8-9e15-497e520d35dd b0b230b12c9a6d5f3c3737f91a596341 {"aliquot_tag": "ALQ_6dd59dc4", "sample": "S80", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.S80_R2.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R2_001.fastq.gz 7602330886 FASTQ S80_R2 submitted_unaligned CPTAC3 00c92a65-49da-4f88-b983-6262fcb6f5cf a691e643e85cddfe82cf54adb0ad8d8d {"aliquot_tag": "ALQ_6dd59dc4", "sample": "S80", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.S9_L003_R1.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3588825985 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 4e6d387e-8645-431c-b5ff-74e4a39bed90 d947dcc47a7d44183ec92821415e8123 {"aliquot_tag": "ALQ_4c81b606", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.S9_L003_R2.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R2_001.fastq.gz 3982335018 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 61c01c7a-0467-4ea4-ab1f-6f572386b121 3524ee9720bb38bdcac9020fec5816bf {"aliquot_tag": "ALQ_4c81b606", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.transcriptome.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.transcriptome.gdc_realn.bam 4781371295 BAM transcriptome harmonized CPTAC3 334fbce9-812f-4e83-8fd0-d5c0840bcc66 c8141661700e47cad6fed5ae3fc15f72 {"aliquot_tag": "ALQ_6dd59dc4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.RNA-Seq.transcriptome.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.transcriptome.gdc_realn.bam 9567662221 BAM transcriptome harmonized CPTAC3 169779ad-bb4e-406e-8ed0-a02fed44ca1a b673816d80602bdedd951dc1402e9ef3 {"aliquot_tag": "ALQ_4c81b606", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.WGS.N C3L-00943 UCEC WGS blood_normal CPT0086140002 CPT0086140002.WholeGenome.RP-1303.bam 62746150540 BAM submitted_aligned CPTAC3 97384739-e8d4-40a9-a50f-33874596b8a3 47e47f94b292a067d2167c8615ddc2fc {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00943.WGS.N.hg38 C3L-00943 UCEC WGS blood_normal CPT0086140002 9a358cdb-35b4-4339-8210-04b5286ab070_wgs_gdc_realn.bam 92031799752 BAM harmonized CPTAC3 af343e31-2784-4d31-bc05-9d3b53d1f04e f717ef7c28413fad94af630edec6a9f2 {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00943.WGS.T C3L-00943 UCEC WGS tumor CPT0086090009 CPT0086090009.WholeGenome.RP-1303.bam 55812238224 BAM submitted_aligned CPTAC3 07a4aa7f-17c6-4e24-a832-43f97963fd35 616a31583d860e5e9af5a2f247d35f85 {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.WGS.T.hg38 C3L-00943 UCEC WGS tumor CPT0086090009 9068e310-b7ee-4c10-b678-ec27dcfb9e0f_wgs_gdc_realn.bam 82387690448 BAM harmonized CPTAC3 ba586765-c91c-491d-a0b6-9b3271bf5c41 5cb93f725e107544e6983873949d28ee {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.WXS.N C3L-00943 UCEC WXS blood_normal CPT0086140002 CPT0086140002.WholeExome.RP-1303.bam 30729116910 BAM submitted_aligned CPTAC3 69d84040-5a3b-4377-b2be-f6552e2f27e7 ed3c6cafeba1a5cbb479f223f8f38cae {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00943.WXS.N.hg38 C3L-00943 UCEC WXS blood_normal CPT0086140002 9a358cdb-35b4-4339-8210-04b5286ab070_wxs_gdc_realn.bam 42962161491 BAM harmonized CPTAC3 7dd28d1b-b86f-42e4-80fd-2ecd678081fb f05a3f40a76c0cd30e4e1f0ffb26288a {"aliquot_tag": "ALQ_7820650b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-00943.WXS.T C3L-00943 UCEC WXS tumor CPT0086090009 CPT0086090009.WholeExome.RP-1303.bam 26927974673 BAM submitted_aligned CPTAC3 a51d0fdf-24ed-4ffb-b875-5a75356702e1 68b8bbdeb4cc53beab54564e66b9d4eb {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00943.WXS.T.hg38 C3L-00943 UCEC WXS tumor CPT0086090009 9068e310-b7ee-4c10-b678-ec27dcfb9e0f_wxs_gdc_realn.bam 36393192181 BAM harmonized CPTAC3 79de16ab-3818-4678-8657-2ccb7ac746a5 74c8d543d9ed835c5d2c62aae2d24477 {"aliquot_tag": "ALQ_dc3eab97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00946.MethArray.Green.T C3L-00946 UCEC Methylation_Array tumor CPT0027520009 202163550072_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a2fc4547-bca7-46f6-bf4c-803dec265c61 394f1e1386aadde29ba6eddcef41da72 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.MethArray.Red.T C3L-00946 UCEC Methylation_Array tumor CPT0027520009 202163550072_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 50afbc9a-5eaf-426f-9500-c8d07dc07f7b b4b68090ce200510b6e60d535d148256 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.miRNA-Seq.S15_L001_R1.T C3L-00946 UCEC miRNA-Seq tumor CPT0027520006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCGTCC_S15_L001_R1_001.unaln.bam 209047356 BAM S15_L001_R1 submitted_unaligned CPTAC3 7cd5384f-0fd0-4407-a9f7-2cdbdfdca618 33b90713d991e24f3ad38e7e616dc537 {"aliquot_tag": "ALQ_5c2b01d8", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.miRNA-Seq.T.hg38 C3L-00946 UCEC miRNA-Seq tumor CPT0027520006 0540fe96-6ec6-45a9-a48c-6675ca9f47a6_mirnaseq_gdc_realn.bam 233739284 BAM harmonized CPTAC3 31e8c244-42b6-4ceb-b328-683034cf8d8b e24539950342a52c1e40952e136fa66e {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.chimeric.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.chimeric.gdc_realn.bam 135103244 BAM chimeric harmonized CPTAC3 939cd22e-4d5b-4dab-a1b1-78aae8f7cb1f 0bf5878120207867d44c2c1a634ba02e {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.chimeric.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.chimeric.gdc_realn.bam 283930672 BAM chimeric harmonized CPTAC3 39b99730-da5e-4432-8089-bd8d4f656890 7f236a2f57b6ccb809d3004d66bce08c {"aliquot_tag": "ALQ_4d0f61db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.genomic.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.genomic.gdc_realn.bam 11524076004 BAM genomic harmonized CPTAC3 cca4f58c-0f22-4a5b-9abb-6cc752be7630 a16cfd4d09eedd559abff78f67387a2a {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.genomic.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.genomic.gdc_realn.bam 11664465795 BAM genomic harmonized CPTAC3 17b47546-cb1e-4c0a-b695-578e947f7816 86f4eb86d027855941b6d273da2396f9 {"aliquot_tag": "ALQ_4d0f61db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.S2_L001_R1.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R1_001.fastq.gz 5950419367 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 dd5912cb-695c-487b-9267-291f8ebb54bb 1fcff343eead4d530f98ef15b90def44 {"aliquot_tag": "ALQ_5c2b01d8", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.S2_L001_R2.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R2_001.fastq.gz 5558684265 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 39a421b8-2826-44af-8ee6-af72e9a27cfa c96c6726f5d433105231d268e6354252 {"aliquot_tag": "ALQ_5c2b01d8", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.S89_R1.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R1_001.fastq.gz 6505326446 FASTQ S89_R1 submitted_unaligned CPTAC3 ac52d771-37f1-4899-9e00-0a6248c37e33 c2053969ea9fd6dbddc07d805fff56ea {"aliquot_tag": "ALQ_4d0f61db", "sample": "S89", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.S89_R2.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R2_001.fastq.gz 6663983224 FASTQ S89_R2 submitted_unaligned CPTAC3 21b6d4b8-a3e8-47e3-8970-0eec3c5f3c9b f47cc602429af43bf8870aa28490c0f6 {"aliquot_tag": "ALQ_4d0f61db", "sample": "S89", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.transcriptome.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.transcriptome.gdc_realn.bam 14962275384 BAM transcriptome harmonized CPTAC3 20fd7b28-1286-41c8-a07a-1b884cae5f24 d8c8ca1f3fe591e0da371d5016885466 {"aliquot_tag": "ALQ_5c2b01d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.RNA-Seq.transcriptome.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.transcriptome.gdc_realn.bam 4921456850 BAM transcriptome harmonized CPTAC3 baba9c67-4a3a-47d5-849e-b839006756e3 d22f70473b7354c49a9ccbc9bca4bcb1 {"aliquot_tag": "ALQ_4d0f61db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.WGS.N C3L-00946 UCEC WGS blood_normal CPT0027580002 CPT0027580002.WholeGenome.RP-1303.bam 62247276419 BAM submitted_aligned CPTAC3 b4dc461c-f9ee-4508-8954-382337fa1a8f 5faf1bb33ea21fcb9a9c7d4f0cca93ea {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00946.WGS.N.hg38 C3L-00946 UCEC WGS blood_normal CPT0027580002 e1096e9c-9941-455a-861b-af3afbfaf88d_gdc_realn.bam 90120362745 BAM harmonized CPTAC3 8b361ca4-6848-4ba3-9c16-5c2cf1872ff4 3736cb1ffe412e727aef25d4b76f04ce {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00946.WGS.T C3L-00946 UCEC WGS tumor CPT0027520009 CPT0027520009.WholeGenome.RP-1303.bam 57202953682 BAM submitted_aligned CPTAC3 4d5b4aee-3c6b-4dae-967e-72ca14c3a78c eaac5ce633ba3d7862b174ae91515c06 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.WGS.T.hg38 C3L-00946 UCEC WGS tumor CPT0027520009 49c45165-41d4-4682-b984-8dee018efa9a_gdc_realn.bam 82264304404 BAM harmonized CPTAC3 ba76dbf1-372a-4b71-aaac-d4c267ebbaa3 72fbc0a9978d687746ab59161f94bb00 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.WXS.N C3L-00946 UCEC WXS blood_normal CPT0027580002 CPT0027580002.WholeExome.RP-1303.bam 27050601725 BAM submitted_aligned CPTAC3 2df9b35b-bbe9-435b-97be-1bb9695d3946 f9795d8af1867e49b5c8a9819c8148ba {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00946.WXS.N.hg38 C3L-00946 UCEC WXS blood_normal CPT0027580002 e1096e9c-9941-455a-861b-af3afbfaf88d_gdc_realn.bam 36954979763 BAM harmonized CPTAC3 ae16fac3-238d-44ad-8b5f-c41ad8f2a58c 885fb09e772e4e3f32c37149f92e2765 {"aliquot_tag": "ALQ_11f6dd60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00946.WXS.T C3L-00946 UCEC WXS tumor CPT0027520009 CPT0027520009.WholeExome.RP-1303.bam 21613777190 BAM submitted_aligned CPTAC3 e3c6f555-f860-4a9f-a8b1-7f4bc0b2c2a4 6fc31c67671795298e91528f874d5d82 {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00946.WXS.T.hg38 C3L-00946 UCEC WXS tumor CPT0027520009 49c45165-41d4-4682-b984-8dee018efa9a_gdc_realn.bam 29713192922 BAM harmonized CPTAC3 9f7c16e3-2d73-42a0-9d4b-61270a1169d9 b7631f330fede5f3de583032014e4b4a {"aliquot_tag": "ALQ_cc941c49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.MethArray.Green.T C3L-00947 UCEC Methylation_Array tumor CPT0027420009 202184900105_R02C01_Grn.idat 13676228 IDAT Green NA CPTAC3 374f688c-a335-411f-ba57-c155b563db65 0824573f5e705b2915e5cbc67d4e5faa {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.MethArray.Red.T C3L-00947 UCEC Methylation_Array tumor CPT0027420009 202184900105_R02C01_Red.idat 13676228 IDAT Red NA CPTAC3 8dffd3b4-ba94-43a6-843f-c9ac3a8e8c4d b4fc200e9a0ef7b59090d3a4e3450f3d {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.miRNA-Seq.S16_L001_R1.T C3L-00947 UCEC miRNA-Seq tumor CPT0027420006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGTCA_S16_L001_R1_001.unaln.bam 172293814 BAM S16_L001_R1 submitted_unaligned CPTAC3 aedbde74-6381-44dd-af70-4db06ef78383 f1ca742369d6d9faecf70b042e3816da {"aliquot_tag": "ALQ_9777d27d", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.miRNA-Seq.T.hg38 C3L-00947 UCEC miRNA-Seq tumor CPT0027420006 916e0ee6-ebc5-4440-9998-f1a50281dc0e_mirnaseq_gdc_realn.bam 184179227 BAM harmonized CPTAC3 669d0afd-483a-4933-9259-5abb6d5ff387 8712f94ccc7381b720921112de89bf58 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.chimeric.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.chimeric.gdc_realn.bam 82170474 BAM chimeric harmonized CPTAC3 04ae95bc-a285-46b0-b94c-94956caf568d 1c357b02b8526c0f574db5aa160c9a89 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.chimeric.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.chimeric.gdc_realn.bam 259508630 BAM chimeric harmonized CPTAC3 4f2bb531-e3aa-402a-9289-03a9ebcf9ba3 99b8b0fa721521b7749deae98a905a69 {"aliquot_tag": "ALQ_8653b27e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.genomic.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.genomic.gdc_realn.bam 9257848676 BAM genomic harmonized CPTAC3 73b1e3f2-d5ec-43b4-9648-b33c056bdb38 c97b42fbc31ed71820532b34ed91cf71 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.genomic.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.genomic.gdc_realn.bam 11209530702 BAM genomic harmonized CPTAC3 c35cc2ab-4e32-4383-b8a0-c6058a4d0f2d 44c9a834ec5d4a0d2a7e07fca8ca7f1b {"aliquot_tag": "ALQ_8653b27e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.S55_R1.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R1_001.fastq.gz 6552628601 FASTQ S55_R1 submitted_unaligned CPTAC3 2464f4dd-d975-48f9-9c70-0d01c8325476 a3d52214d4925dc08ca2716f6ddeebe6 {"aliquot_tag": "ALQ_8653b27e", "sample": "S55", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.S55_R2.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R2_001.fastq.gz 6669345606 FASTQ S55_R2 submitted_unaligned CPTAC3 19e6b95f-827c-403d-bf30-e22dd7f47708 06570160bf4ca5db527d04df11fceeb9 {"aliquot_tag": "ALQ_8653b27e", "sample": "S55", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.S5_L002_R1.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R1_001.fastq.gz 5110657108 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 989082f5-abb2-4d47-a6b3-e3560b9b38d3 53c6cad957e16ec901de39e21bd50995 {"aliquot_tag": "ALQ_9777d27d", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.S5_L002_R2.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R2_001.fastq.gz 5411220746 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 8d9b3ee8-b37d-4e67-856c-149dcd51f602 9a91285ca4406c7a3e01b672836d086f {"aliquot_tag": "ALQ_9777d27d", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.transcriptome.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.transcriptome.gdc_realn.bam 12966401715 BAM transcriptome harmonized CPTAC3 01f4bf07-f31f-4b48-86e7-7189950d8ee0 9b5b1f6cf0c441314b6b78cca789def8 {"aliquot_tag": "ALQ_9777d27d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.RNA-Seq.transcriptome.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.transcriptome.gdc_realn.bam 4667227382 BAM transcriptome harmonized CPTAC3 0f0f845a-3e2f-4240-a4b4-32661325fd31 ff6af52a19fb217fdc616f686fd12b2f {"aliquot_tag": "ALQ_8653b27e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.WGS.N C3L-00947 UCEC WGS blood_normal CPT0027480002 CPT0027480002.WholeGenome.RP-1303.bam 55317293102 BAM submitted_aligned CPTAC3 19785a4b-f66f-4abd-8cc2-ab14e8109fc2 8bfd398a91d172f5cf0c7ac09c4fdedc {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00947.WGS.N.hg38 C3L-00947 UCEC WGS blood_normal CPT0027480002 151447ea-0a29-4f5b-b2b5-c844ecd8e530_gdc_realn.bam 81089926362 BAM harmonized CPTAC3 f09df81d-7521-4c7f-ade2-c7c64f7f6146 0c837c6492f13ace6cff1668c62e8d2c {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00947.WGS.T C3L-00947 UCEC WGS tumor CPT0027420009 CPT0027420009.WholeGenome.RP-1303.bam 63014999039 BAM submitted_aligned CPTAC3 df70395e-da71-4a02-87ce-e79bb382caa2 2b6f280fb11e3b7ee43da06384b5d2e0 {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.WGS.T.hg38 C3L-00947 UCEC WGS tumor CPT0027420009 8d88f32c-d396-4335-a5bf-6071ae72e740_gdc_realn.bam 91233144365 BAM harmonized CPTAC3 766f7db5-1abd-45f6-b662-27fd77070be2 0179981c18b5ac06a410084be9a925c6 {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.WXS.N C3L-00947 UCEC WXS blood_normal CPT0027480002 CPT0027480002.WholeExome.RP-1303.bam 28118387601 BAM submitted_aligned CPTAC3 c707d921-31f0-4460-8dcd-f000420b0b8c cf7d309cc16fd212d7e5375c5c9d7848 {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00947.WXS.N.hg38 C3L-00947 UCEC WXS blood_normal CPT0027480002 151447ea-0a29-4f5b-b2b5-c844ecd8e530_gdc_realn.bam 38437084434 BAM harmonized CPTAC3 0a956166-4f53-45a7-afcd-27ff6a956bb4 a6088f6e9a8394dae3a3b73866aecab1 {"aliquot_tag": "ALQ_daaa0ec5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00947.WXS.T C3L-00947 UCEC WXS tumor CPT0027420009 CPT0027420009.WholeExome.RP-1303.bam 25529744354 BAM submitted_aligned CPTAC3 c20cc1ed-0cee-4d29-b4f7-bd705b2faa78 fd5f4ac10319d886a7c1b5158ea0b52c {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00947.WXS.T.hg38 C3L-00947 UCEC WXS tumor CPT0027420009 8d88f32c-d396-4335-a5bf-6071ae72e740_gdc_realn.bam 35533060762 BAM harmonized CPTAC3 d60d7a82-029f-47bc-82b9-0bdd09cbb8f3 24f8adfd41a48f2022bb96bb7c14eaca {"aliquot_tag": "ALQ_7c8cfec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.MethArray.Green.T C3L-00949 UCEC Methylation_Array tumor CPT0016370006 202178770079_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 609e163b-3b10-4737-97d7-1db655ef5877 db3771d530028121de25e42d49ec611b {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.MethArray.Red.T C3L-00949 UCEC Methylation_Array tumor CPT0016370006 202178770079_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 336281fc-8187-45df-8768-c09d9901df00 676b3a812fb0e76d5af0934a935b7c06 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.miRNA-Seq.S30_L002_R1.T C3L-00949 UCEC miRNA-Seq tumor CPT0016370009 180924_UNC31-K00269_0154_AHWTMLBBXX_TAATCG_S30_L002_R1_001.unaln.bam 221452962 BAM S30_L002_R1 submitted_unaligned CPTAC3 529c7573-c354-4f1c-9147-141fd25186df eb5882cf07a7579000a512feef51d7f0 {"aliquot_tag": "ALQ_fad57c73", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.miRNA-Seq.T.hg38 C3L-00949 UCEC miRNA-Seq tumor CPT0016370009 d5d13eda-ff6a-438a-af78-ac34964bf567_mirnaseq_gdc_realn.bam 244702440 BAM harmonized CPTAC3 2bb636e5-2fce-4e76-b9b1-470455d37f81 500dd257ba1d3533f0c8c12097957b74 {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.RNA-Seq.chimeric.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.chimeric.gdc_realn.bam 51855651 BAM chimeric harmonized CPTAC3 029d1552-cd3b-4f2a-8e11-3be02d934820 3db3eabb8616e5a12973f106cb5970b3 {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.RNA-Seq.genomic.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.genomic.gdc_realn.bam 6944574659 BAM genomic harmonized CPTAC3 cd43b890-f398-4ec0-ade6-e517484509eb 03da8998a24e400e10d3ed7d9120846a {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.RNA-Seq.S5_L008_R1.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R1_001.fastq.gz 3317808630 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 acc81064-08f0-457b-9629-1bb742e4ceb6 cec89f2c90023f22c7b5a5578fb1c8f8 {"aliquot_tag": "ALQ_fad57c73", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.RNA-Seq.S5_L008_R2.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R2_001.fastq.gz 3611007600 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 1e750be5-488d-4a05-9c08-928700638328 2699aec1b8188078122714e85a954337 {"aliquot_tag": "ALQ_fad57c73", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.RNA-Seq.transcriptome.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.transcriptome.gdc_realn.bam 8138050527 BAM transcriptome harmonized CPTAC3 64f4d299-38ab-4bea-8f8b-df361e54fbe3 5a7bb78b378bf2c253d99d1ae2265c60 {"aliquot_tag": "ALQ_fad57c73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.WGS.N C3L-00949 UCEC WGS blood_normal CPT0016440002 CPT0016440002.WholeGenome.RP-1303.bam 82245907149 BAM submitted_aligned CPTAC3 da40b327-c2d2-4b9b-9f0a-643e9705a431 6094f3ad0f6fb4d3d436c91b87260b4d {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00949.WGS.N.hg38 C3L-00949 UCEC WGS blood_normal CPT0016440002 ff9ecfd3-1cb1-4fbc-b644-7060d84c4df2_gdc_realn.bam 123260864011 BAM harmonized CPTAC3 bb4ccd90-f05f-48bc-b1bf-31420ea52bff 750639949f023e4a2d73b24ada90c7c1 {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00949.WGS.T C3L-00949 UCEC WGS tumor CPT0016370006 CPT0016370006.WholeGenome.RP-1303.bam 83779699681 BAM submitted_aligned CPTAC3 bbc437ca-859d-4584-bf1a-afd645df394b 223044a9865feef28fd8450ba1e2a68a {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.WGS.T.hg38 C3L-00949 UCEC WGS tumor CPT0016370006 b4f80061-4d26-41c1-9931-7423d6eb4b8a_gdc_realn.bam 125849666138 BAM harmonized CPTAC3 f027559a-6562-4a93-a278-256e1a8d6bf7 6da3e80578f0ac7f83f1733ac0078615 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.WXS.N C3L-00949 UCEC WXS blood_normal CPT0016440002 CPT0016440002.WholeExome.RP-1303.bam 30252831574 BAM submitted_aligned CPTAC3 7d65bd6b-fd23-4d09-8555-9dcd266dc171 b426988a2ab0846721ef8f42f94718a5 {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00949.WXS.N.hg38 C3L-00949 UCEC WXS blood_normal CPT0016440002 ff9ecfd3-1cb1-4fbc-b644-7060d84c4df2_gdc_realn.bam 41464319368 BAM harmonized CPTAC3 6dd56638-c056-487f-a7fe-f446da41b8e2 f27c83b98b9f8db3b7d2633415bb4ca3 {"aliquot_tag": "ALQ_37a2ef93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00949.WXS.T C3L-00949 UCEC WXS tumor CPT0016370006 CPT0016370006.WholeExome.RP-1303.bam 31179165388 BAM submitted_aligned CPTAC3 a748c37a-854b-404b-a0cc-57ca932c74c3 110b2220d1f9eb2d37b7a78720b7cc00 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00949.WXS.T.hg38 C3L-00949 UCEC WXS tumor CPT0016370006 b4f80061-4d26-41c1-9931-7423d6eb4b8a_gdc_realn.bam 42521749377 BAM harmonized CPTAC3 182fea04-02cf-4d59-a7b5-ea460b167acc 18d07dee617eb71bb2b79c3da76632d9 {"aliquot_tag": "ALQ_6a6a61e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.MethArray.Green.T C3L-00961 UCEC Methylation_Array tumor CPT0027320009 202176290046_R02C01_Grn.idat 13676215 IDAT Green NA CPTAC3 ffd31bae-327f-4ec8-9213-4a6c72ba2496 de7322980d91448694880525cba905d2 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.MethArray.Red.T C3L-00961 UCEC Methylation_Array tumor CPT0027320009 202176290046_R02C01_Red.idat 13676215 IDAT Red NA CPTAC3 a376ca0b-7c97-48a2-972f-92937def182b d2860bffa5ed916dc74a34083ce5d223 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.miRNA-Seq.S17_L001_R1.T C3L-00961 UCEC miRNA-Seq tumor CPT0027320006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTTCC_S17_L001_R1_001.unaln.bam 212988736 BAM S17_L001_R1 submitted_unaligned CPTAC3 8099e457-9d97-4562-901f-9684a0c2f382 547eebcd321b149879498ce1922f5b8a {"aliquot_tag": "ALQ_8a72e2c5", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.miRNA-Seq.T.hg38 C3L-00961 UCEC miRNA-Seq tumor CPT0027320006 fe9075dd-a20e-4b0b-8af4-e964e6d13057_mirnaseq_gdc_realn.bam 235008497 BAM harmonized CPTAC3 eefb9752-6654-44b7-9870-6f955c1515d8 07572d5f05fe5d8bb7a92808ac740c6f {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.chimeric.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.chimeric.gdc_realn.bam 71262395 BAM chimeric harmonized CPTAC3 06be8c4e-f81a-45ad-ad1b-2fffb4bedf5f 5ae922c5588e8fc27832cf1fb8bded2e {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.chimeric.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.chimeric.gdc_realn.bam 179475928 BAM chimeric harmonized CPTAC3 7635e40c-1c63-42ba-998b-f90265dd952f d614407377218ee35e914ea085653cc0 {"aliquot_tag": "ALQ_9b5682c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.genomic.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.genomic.gdc_realn.bam 8547994668 BAM genomic harmonized CPTAC3 d4945a21-7218-4289-8e9f-c1ec6890ac71 7f82499df2cdaa638b77a4ce2e54cf46 {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.genomic.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.genomic.gdc_realn.bam 8192626608 BAM genomic harmonized CPTAC3 d22b0369-37e8-45ea-86df-d1db2591f637 ef35a414f02889c984513814efd74203 {"aliquot_tag": "ALQ_9b5682c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.S38_R1.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R1_001.fastq.gz 5095479961 FASTQ S38_R1 submitted_unaligned CPTAC3 f9cae9a1-a916-4a89-9381-65360e61bbcb e1d12fdb9868dc208bb94cd854871b24 {"aliquot_tag": "ALQ_9b5682c6", "sample": "S38", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.S38_R2.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R2_001.fastq.gz 5294472018 FASTQ S38_R2 submitted_unaligned CPTAC3 1c4d29fb-ba85-44b4-bda6-e6873ba2e6a9 6be5584577c27c241e073e2c4c1baed2 {"aliquot_tag": "ALQ_9b5682c6", "sample": "S38", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.S4_L002_R1.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R1_001.fastq.gz 4938190260 FASTQ S4_L002_R1 submitted_unaligned CPTAC3 339ad507-4d3e-4c9e-ae1c-5a207645cf9b 4d3b7b6a99a762b8ba3ccb26346f49cf {"aliquot_tag": "ALQ_8a72e2c5", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.S4_L002_R2.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R2_001.fastq.gz 5192890639 FASTQ S4_L002_R2 submitted_unaligned CPTAC3 6af2d835-4e67-4d59-9cf9-da8f0d197f44 7b9d93fe7b35fde68b0b14b2e72c7705 {"aliquot_tag": "ALQ_8a72e2c5", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.transcriptome.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.transcriptome.gdc_realn.bam 13186227979 BAM transcriptome harmonized CPTAC3 92083679-d782-4662-bcf6-ef2f368d86aa 9b5819b1bb375c7b133d2db77d353047 {"aliquot_tag": "ALQ_8a72e2c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.RNA-Seq.transcriptome.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.transcriptome.gdc_realn.bam 3953062528 BAM transcriptome harmonized CPTAC3 94ca974c-9019-4bd0-9a21-757e1f996d9b ac97877a8cf06ee89db5df8e267f5251 {"aliquot_tag": "ALQ_9b5682c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.WGS.N C3L-00961 UCEC WGS blood_normal CPT0027380002 CPT0027380002.WholeGenome.RP-1303.bam 57575239957 BAM submitted_aligned CPTAC3 653769e1-f0d2-4dce-a6a9-50e1cc4e8eb8 32c2d8185dd0f7405711be3d65cc820a {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00961.WGS.N.hg38 C3L-00961 UCEC WGS blood_normal CPT0027380002 2ebebf6f-5324-4914-b811-16b21e534c86_gdc_realn.bam 84725365572 BAM harmonized CPTAC3 7ede6f1d-f31a-4122-b9a4-efec55776a69 9df0331b6048403d2ec6d346daae70fc {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00961.WGS.T C3L-00961 UCEC WGS tumor CPT0027320009 CPT0027320009.WholeGenome.RP-1303.bam 66266176258 BAM submitted_aligned CPTAC3 03e4932b-6f46-45ab-a6f2-332ecb7fdfc4 681ab60530c0556a57d31816bb6e64a9 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.WGS.T.hg38 C3L-00961 UCEC WGS tumor CPT0027320009 56a0a87f-0053-436e-be1c-a0a3c975e19e_gdc_realn.bam 95919916981 BAM harmonized CPTAC3 2c79d829-0805-426f-bde9-d7862506dc75 405b21b4b92150008baa4613e484773a {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.WXS.N C3L-00961 UCEC WXS blood_normal CPT0027380002 CPT0027380002.WholeExome.RP-1303.bam 20211022629 BAM submitted_aligned CPTAC3 5cb5ae6c-4a2d-471f-8f28-11c1622d7d2a 5fde4f714c91640b6dc9825cb2ffcf73 {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00961.WXS.N.hg38 C3L-00961 UCEC WXS blood_normal CPT0027380002 2ebebf6f-5324-4914-b811-16b21e534c86_gdc_realn.bam 27732495438 BAM harmonized CPTAC3 4d3a50d1-30e2-41fa-bea1-18e48bb47d4f 19d715de0602a0ebb5d80e743bc8ef30 {"aliquot_tag": "ALQ_c7af3e7d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00961.WXS.T C3L-00961 UCEC WXS tumor CPT0027320009 CPT0027320009.WholeExome.RP-1303.bam 25445873092 BAM submitted_aligned CPTAC3 f6887135-5cc9-4373-92d0-658826ad5f5e 6bb22560e9ec82b04467bf259db3c52b {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00961.WXS.T.hg38 C3L-00961 UCEC WXS tumor CPT0027320009 56a0a87f-0053-436e-be1c-a0a3c975e19e_gdc_realn.bam 34761278162 BAM harmonized CPTAC3 266c147a-cbf1-4b6d-8bb7-2497f2ad9013 13663d7f7ced023c1dcb82a841ab8b63 {"aliquot_tag": "ALQ_1acdff54", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00962.miRNA-Seq.S38_L002_R1.T C3L-00962 UCEC miRNA-Seq tumor CPT0016680021 190508_UNC31-K00269_0215_BH7FYKBBXY_CTAGCT_S38_L002_R1_001.unaln.bam 386861758 BAM S38_L002_R1 submitted_unaligned CPTAC3 1730f0aa-3cb4-43c6-920a-f097760e35c7 b563f4ceb25ce01a68d30eac065747bf {"aliquot_tag": "ALQ_14a590a1", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00962.miRNA-Seq.T.hg38 C3L-00962 UCEC miRNA-Seq tumor CPT0016680021 f5d78104-3d2f-4211-b445-4407c4eb18bd_mirnaseq_gdc_realn.bam 443899159 BAM harmonized CPTAC3 61c78bc2-2199-465f-b1b7-aaa1213defe6 6c15ef2423e2c10049037844cabff57f {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00962.RNA-Seq.chimeric.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.chimeric.gdc_realn.bam 37530634 BAM chimeric harmonized CPTAC3 d021d1ea-12e2-4b0a-ba31-e4424d58cf8d 29a7515773ff9d0b2fcd09dbce9cc1c1 {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00962.RNA-Seq.genomic.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.genomic.gdc_realn.bam 8033278072 BAM genomic harmonized CPTAC3 1388d22d-2b34-4d1d-a8e6-aba74f9f4b00 0c4b20e607fc1490398dba44ea819959 {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00962.RNA-Seq.S24_L006_R1.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R1_001.fastq.gz 3871623999 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 8b61732b-9c39-47e9-bdb2-944ac0f2c32d d184dd1b169d6f224d35113760b29a82 {"aliquot_tag": "ALQ_14a590a1", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00962.RNA-Seq.S24_L006_R2.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R2_001.fastq.gz 4329264982 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 e7278e12-717f-48e4-a8ea-b52d1f793018 4d5626be2773cda2241f2cf41657e34b {"aliquot_tag": "ALQ_14a590a1", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00962.RNA-Seq.transcriptome.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.transcriptome.gdc_realn.bam 10598535450 BAM transcriptome harmonized CPTAC3 0e578f05-cf30-4a1a-b694-b72196ffa961 2ed785f63c0673ab8bf147404dc01320 {"aliquot_tag": "ALQ_14a590a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00963.MethArray.Green.T C3L-00963 UCEC Methylation_Array tumor CPT0016490006 202163550007_R02C01_Grn.idat 13676228 IDAT Green NA CPTAC3 eefcb0a2-3e9f-403e-b957-1869dc3205c0 0627ebc13840e3fc60462d43290aea51 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.MethArray.Red.T C3L-00963 UCEC Methylation_Array tumor CPT0016490006 202163550007_R02C01_Red.idat 13676228 IDAT Red NA CPTAC3 f9fe6baf-fddd-4b17-a545-198c6717e92a 348745e27ff737e41398af0c5ed36594 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.miRNA-Seq.S29_L002_R1.T C3L-00963 UCEC miRNA-Seq tumor CPT0016490009 180924_UNC31-K00269_0154_AHWTMLBBXX_TACAGC_S29_L002_R1_001.unaln.bam 310633478 BAM S29_L002_R1 submitted_unaligned CPTAC3 0646f0bb-c0e5-4311-9d4a-e202a1b037cb c5a0b24c3b989b3eacccd4f2aaeaa223 {"aliquot_tag": "ALQ_58e0f2aa", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.miRNA-Seq.T.hg38 C3L-00963 UCEC miRNA-Seq tumor CPT0016490009 88aa1c93-b21b-4c2a-989e-e7f1368ebed7_mirnaseq_gdc_realn.bam 339423165 BAM harmonized CPTAC3 c72873ad-9dbd-4969-911f-b48f1f1ef185 c30e3f1d4ca7ade863255eb9c5a06714 {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.chimeric.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.chimeric.gdc_realn.bam 60165141 BAM chimeric harmonized CPTAC3 24ff4bbc-4124-4607-8927-5fe91f7e996f 9c2e96c1f6ffed0f1853d17edf9f4dba {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.chimeric.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.chimeric.gdc_realn.bam 209802031 BAM chimeric harmonized CPTAC3 f2187924-4aa3-4a59-8fdd-24555170eac8 10c51e6485e59c4ede28a8d266033128 {"aliquot_tag": "ALQ_65f76d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.genomic.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.genomic.gdc_realn.bam 8452431023 BAM genomic harmonized CPTAC3 14d998a3-3299-4006-9509-09df67e2ebd9 fa581f5dec9a482863774fc3e422ed49 {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.genomic.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.genomic.gdc_realn.bam 9869329856 BAM genomic harmonized CPTAC3 3dcc8471-0832-429d-a9d6-3da5557e85f1 d9d915891d82e8d8816c4a5ceccdb580 {"aliquot_tag": "ALQ_65f76d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.S17_R1.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R1_001.fastq.gz 5716287588 FASTQ S17_R1 submitted_unaligned CPTAC3 c61ccb46-6090-460c-9c41-b170f803b8f4 fad8cfe1057f4e64f5b9cb54172760df {"aliquot_tag": "ALQ_65f76d8c", "sample": "S17", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.S17_R2.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R2_001.fastq.gz 5940140719 FASTQ S17_R2 submitted_unaligned CPTAC3 c805f186-cdd7-4009-99a2-7366db342610 fc429bb3f22b13a7782c62637c6570a9 {"aliquot_tag": "ALQ_65f76d8c", "sample": "S17", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.S2_L007_R1.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R1_001.fastq.gz 3797154043 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 1041d695-f7af-49a9-a30c-b81115bd4ea7 3da454cb1e8393c1765a51dd6bc8b68c {"aliquot_tag": "ALQ_58e0f2aa", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.S2_L007_R2.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R2_001.fastq.gz 4039874386 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 dfa1ae1e-a25a-483a-8e30-29a16c5d9939 c7236fd8c2c13c39b2312bdf3855b650 {"aliquot_tag": "ALQ_58e0f2aa", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.transcriptome.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.transcriptome.gdc_realn.bam 9363329659 BAM transcriptome harmonized CPTAC3 79cd168b-089b-4aac-aa54-226be23b304c 54b78452e5a1219c7ba4971739f63f97 {"aliquot_tag": "ALQ_58e0f2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.RNA-Seq.transcriptome.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.transcriptome.gdc_realn.bam 5524432082 BAM transcriptome harmonized CPTAC3 99bd4a65-0c5b-44ba-adbe-3e83c64cb525 90db3f02873bedd7c404b224d1d9a3af {"aliquot_tag": "ALQ_65f76d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.WGS.N C3L-00963 UCEC WGS blood_normal CPT0016580002 CPT0016580002.WholeGenome.RP-1303.bam 60363727193 BAM submitted_aligned CPTAC3 fd16df5e-b67d-403c-ae08-940c67f7e5ff 267aab00104a26f562ca4d576d4d7ecf {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00963.WGS.N.hg38 C3L-00963 UCEC WGS blood_normal CPT0016580002 6bf834f1-56da-43d9-98d1-6430d3011f86_gdc_realn.bam 88258777385 BAM harmonized CPTAC3 1fc95228-bfef-4385-8139-e212a669da09 ce879ca6271c285b11743d20fad69954 {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00963.WGS.T C3L-00963 UCEC WGS tumor CPT0016490006 CPT0016490006.WholeGenome.RP-1303.bam 73735451887 BAM submitted_aligned CPTAC3 b69e38c7-928b-4f01-82c8-ec8858b478b8 0b88c93e421d4f48ec93a6c76123b8bb {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.WGS.T.hg38 C3L-00963 UCEC WGS tumor CPT0016490006 8dd015d6-ae3a-40d5-bc79-798ae6e58d69_gdc_realn.bam 106051183348 BAM harmonized CPTAC3 5df1af76-66e7-4bf2-af84-e795e172fc9b c0048572a26437dfc73a0a3d2c224847 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.WXS.N C3L-00963 UCEC WXS blood_normal CPT0016580002 CPT0016580002.WholeExome.RP-1303.bam 34058665649 BAM submitted_aligned CPTAC3 3b1346b2-15c4-426d-9a84-80205c0cedb4 4342b4a9a7f06d3ea167e8ce98638d09 {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00963.WXS.N.hg38 C3L-00963 UCEC WXS blood_normal CPT0016580002 6bf834f1-56da-43d9-98d1-6430d3011f86_gdc_realn.bam 45909974051 BAM harmonized CPTAC3 36a10350-2017-46dc-ae84-9d87036edd79 762fcb700407644d63aa0a9f3c1affbb {"aliquot_tag": "ALQ_390ed137", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00963.WXS.T C3L-00963 UCEC WXS tumor CPT0016490006 CPT0016490006.WholeExome.RP-1303.bam 25100549844 BAM submitted_aligned CPTAC3 317010d0-d173-46e5-92db-8b5c77f6e444 5cd2b2b56005d51edd38b6f627251d19 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00963.WXS.T.hg38 C3L-00963 UCEC WXS tumor CPT0016490006 8dd015d6-ae3a-40d5-bc79-798ae6e58d69_gdc_realn.bam 33896115966 BAM harmonized CPTAC3 ab63ee96-3de7-40ee-92a4-1ca8a2bca48d 352453cfbc4edb6630bd5554ea3764f8 {"aliquot_tag": "ALQ_c85fef3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.MethArray.Green.T C3L-00965 LSCC Methylation_Array tumor CPT0101130009 202234380050_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f1453f2d-2bba-4bc0-8b71-6b9412a83ae8 4c76d2a234be68116f01ffb30f54b6ee {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.MethArray.Red.T C3L-00965 LSCC Methylation_Array tumor CPT0101130009 202234380050_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 5d9cc785-d78b-4c06-be22-e6afc79fde6d 57932c1abf568813bafe0164093886e9 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.miRNA-Seq.S28_L002_R1.T C3L-00965 LSCC miRNA-Seq tumor CPT0101130006 181113_UNC31-K00269_0164_AH23NNBBXY_TGACCA_S28_L002_R1_001.unaln.bam 205935743 BAM S28_L002_R1 submitted_unaligned CPTAC3 da2d8c25-c2d7-4adb-b33a-3f04472a2256 d39a79917a2593429a1e67543a9f3316 {"aliquot_tag": "ALQ_cc544c7a", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.miRNA-Seq.T.hg38 C3L-00965 LSCC miRNA-Seq tumor CPT0101130006 bfe72a51-c186-42dc-b528-ba4c78d4797d_mirnaseq_gdc_realn.bam 223610232 BAM harmonized CPTAC3 feb74597-8032-4d6c-b535-dd82c8af5641 eefd46bbc6f9a6ebb68c941e6ea33539 {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.RNA-Seq.chimeric.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.chimeric.gdc_realn.bam 40063747 BAM chimeric harmonized CPTAC3 becfbf52-c050-4acd-92e2-742f71e4264f 0274c6bbba4abe9fd5946480ef4e53c4 {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.RNA-Seq.genomic.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.genomic.gdc_realn.bam 8029246621 BAM genomic harmonized CPTAC3 5851f61d-fc25-451e-b54d-9c341bffa7b1 5c0b39e09b6629fffc5e5ab80468a011 {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.RNA-Seq.S11_L003_R1.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3866276780 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 0020d643-33e0-4d2f-bbbe-ac2b1d7be8af f4f7205be9d06502d325754024c3a8b4 {"aliquot_tag": "ALQ_cc544c7a", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.RNA-Seq.S11_L003_R2.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 4009720420 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 3b6c31b7-7ef7-4306-81ae-f568f7a8bbba 7fed5e595cf2c40340627f3bf452d648 {"aliquot_tag": "ALQ_cc544c7a", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.RNA-Seq.transcriptome.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.transcriptome.gdc_realn.bam 10174284530 BAM transcriptome harmonized CPTAC3 b24aa827-35aa-44fe-ba36-284fffbfc6c5 52cfbbc114c39a43b6b19f4d0e97f56d {"aliquot_tag": "ALQ_cc544c7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.WGS.N C3L-00965 LSCC WGS blood_normal CPT0100930002 CPT0100930002.WholeGenome.RP-1303.bam 63111872939 BAM submitted_aligned CPTAC3 d5bc519c-4660-47c5-b386-e423496cd875 10d61df0fcb2244a3c16b5102bb9f4f0 {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00965.WGS.N.hg38 C3L-00965 LSCC WGS blood_normal CPT0100930002 fb9fa687-6ff7-445d-8f04-b7831151cb3b_wgs_gdc_realn.bam 93380029224 BAM harmonized CPTAC3 178064bc-5caa-486d-a646-d6cb4dcb1eda e5ad8f5512f0f96700ff0f8c591ccfc4 {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00965.WGS.T C3L-00965 LSCC WGS tumor CPT0101130009 CPT0101130009.WholeGenome.RP-1303.bam 60741165959 BAM submitted_aligned CPTAC3 2039e496-24d9-498c-a489-3bd8d79f0707 bf2154683ee402545d82234e132f94d9 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.WGS.T.hg38 C3L-00965 LSCC WGS tumor CPT0101130009 12efcab8-04a7-4ae6-ac66-34cac3484d19_wgs_gdc_realn.bam 88689987555 BAM harmonized CPTAC3 e1cc3450-d82b-43e3-ab48-ea2b88a33932 96e1ee56f87d7f1067cf0156c709ad6d {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.WXS.N C3L-00965 LSCC WXS blood_normal CPT0100930002 CPT0100930002.WholeExome.RP-1303.bam 33595056807 BAM submitted_aligned CPTAC3 ea948740-a8db-4509-a89c-815f08794c24 91d0c6476330fa7b6f8bbd09735c336d {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00965.WXS.N.hg38 C3L-00965 LSCC WXS blood_normal CPT0100930002 fb9fa687-6ff7-445d-8f04-b7831151cb3b_wxs_gdc_realn.bam 45644011184 BAM harmonized CPTAC3 b482fcb7-3eed-4ae7-949f-51438a7a2f53 d19691b41d889fcbb03d03e56aac9a63 {"aliquot_tag": "ALQ_811d01ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00965.WXS.T C3L-00965 LSCC WXS tumor CPT0101130009 CPT0101130009.WholeExome.RP-1303.bam 38420631618 BAM submitted_aligned CPTAC3 bb8ecac8-5b08-4ca8-b25e-83468578fda1 682f0fa64592633da02a569d4fe11c03 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00965.WXS.T.hg38 C3L-00965 LSCC WXS tumor CPT0101130009 12efcab8-04a7-4ae6-ac66-34cac3484d19_wxs_gdc_realn.bam 52570455626 BAM harmonized CPTAC3 2bf65b88-0fdd-4b8d-a72e-49a5e41e4167 19b9d4c8fed79b9bf3e284af48ee2a71 {"aliquot_tag": "ALQ_5ceb51eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.MethArray.Green.A C3L-00966 CCRCC Methylation_Array tissue_normal CPT0101350006 204373100109_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 30f398a4-d0c7-4d00-b7bd-e18045e25308 dc4a53431a6d8c424835f2fdceb70bb6 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.MethArray.Green.T C3L-00966 CCRCC Methylation_Array tumor CPT0101310009 202234370086_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b41aa881-37ba-44bc-9382-6b2bb9d3782c 766af71521874c8d46e1755955b98459 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.MethArray.Red.A C3L-00966 CCRCC Methylation_Array tissue_normal CPT0101350006 204373100109_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 4a8d875a-65fc-44a4-b293-45cd69434f39 2935f9c9aa67219eaa3dff25147b2736 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.MethArray.Red.T C3L-00966 CCRCC Methylation_Array tumor CPT0101310009 202234370086_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 576c21e1-8333-429a-8502-9cc55e26466b 72d28ce61d58e508ff3037c03c7c872b {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.miRNA-Seq.A.hg38 C3L-00966 CCRCC miRNA-Seq tissue_normal CPT0101350009 eeadf540-b8fb-44b6-8396-aed8fbb188b3_mirnaseq_gdc_realn.bam 202213923 BAM harmonized CPTAC3 1d83c6a2-e74d-4c1d-a154-3eac6b0088d5 9b837dee17c71a1c96448c017087a7fd {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.miRNA-Seq.S29_L002_R1.T C3L-00966 CCRCC miRNA-Seq tumor CPT0101310006 181113_UNC31-K00269_0164_AH23NNBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 193289668 BAM S29_L002_R1 submitted_unaligned CPTAC3 1bf4951c-cb13-45a1-b1f0-f8c1b368327c 9f36d32285955d166372748b5b0f7251 {"aliquot_tag": "ALQ_fb5cbe11", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.miRNA-Seq.S32_L002_R1.A C3L-00966 CCRCC miRNA-Seq tissue_normal CPT0101350009 181119_UNC31-K00269_0165_AH27WCBBXY_ACTTGA_S32_L002_R1_001.unaln.bam 179310237 BAM S32_L002_R1 submitted_unaligned CPTAC3 f8baf566-e666-4cb9-a4aa-a6233975fb4d 42d6bd67b97544059619d262f824a55c {"aliquot_tag": "ALQ_9e630540", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.miRNA-Seq.T.hg38 C3L-00966 CCRCC miRNA-Seq tumor CPT0101310006 29114b93-e2f5-4465-a98e-583d4e4b41f3_mirnaseq_gdc_realn.bam 214305707 BAM harmonized CPTAC3 6ce08308-9cf5-478a-9ff5-830befeeef54 a55b45a63091acf232458e5fc4a7f0da {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.RNA-Seq.chimeric.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.chimeric.gdc_realn.bam 38687143 BAM chimeric harmonized CPTAC3 7851cae6-9328-4c96-914b-d1e36de82ed1 61039463e6ae3c7b7689385f5e893406 {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.RNA-Seq.chimeric.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.chimeric.gdc_realn.bam 47217173 BAM chimeric harmonized CPTAC3 a3dc2e8e-1c60-4bb1-bf81-7286d0361c27 2004ad771420e52966b6db56a34c636c {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.RNA-Seq.genomic.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.genomic.gdc_realn.bam 9257768115 BAM genomic harmonized CPTAC3 589948a1-4285-473d-bf58-fb7fd8edf228 0f9a1065ca7fd4596edda31c0c0815dd {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.RNA-Seq.genomic.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.genomic.gdc_realn.bam 9161683533 BAM genomic harmonized CPTAC3 931d8e81-db84-4160-99bd-ef5e6f60d9e9 7ac9298c32e21febbaf0ab62c8860aed {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.RNA-Seq.S10_L003_R1.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4398111732 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 59d5dee9-9811-432f-89b6-0ac178febae1 51f483b8268085b0d226855bb70d6062 {"aliquot_tag": "ALQ_fb5cbe11", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.RNA-Seq.S10_L003_R2.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4776142266 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 0a7e3be2-b23c-41b9-965a-c84966ab661a 2b5ef0232e88aaa30074283c96856123 {"aliquot_tag": "ALQ_fb5cbe11", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.RNA-Seq.S7_L002_R1.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R1_001.fastq.gz 4370927479 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 3edfa9a1-3ee2-4193-9f85-465eb53d860c 816b76b8742e6afeea0bcb655b6d6804 {"aliquot_tag": "ALQ_9e630540", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.RNA-Seq.S7_L002_R2.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R2_001.fastq.gz 4880561349 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 d88fb2f1-ad91-4ecc-ab43-f8cca98dcb13 212c6d1b529d1566036df648c6ed162b {"aliquot_tag": "ALQ_9e630540", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.RNA-Seq.transcriptome.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.transcriptome.gdc_realn.bam 12039267077 BAM transcriptome harmonized CPTAC3 b95b6769-5aea-4147-99c4-4562ffe25a95 97a45f1395b536ff61a2f73dd251e000 {"aliquot_tag": "ALQ_9e630540", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.RNA-Seq.transcriptome.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.transcriptome.gdc_realn.bam 12692578325 BAM transcriptome harmonized CPTAC3 b6c72d32-7ebd-46b9-889c-bca4f0da54fe 1836757a5dc43983d9523b75d97dfc6a {"aliquot_tag": "ALQ_fb5cbe11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.WGS.A C3L-00966 CCRCC WGS tissue_normal CPT0101350006 CPT0101350006.WholeGenome.RP-1303.bam 63170432043 BAM submitted_aligned CPTAC3 869d1ba0-df18-45b0-a73e-c72be914db9a 12a049daef305ea73478bc31dccc4ad1 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.WGS.A.hg38 C3L-00966 CCRCC WGS tissue_normal CPT0101350006 20b0ba65-fa9c-49ad-850d-d9f3e644a617_wgs_gdc_realn.bam 94012045685 BAM harmonized CPTAC3 133a9d5f-bfdc-4fd2-901c-ab3b32aa4758 4a39d08a5a40d1454739864552d6b5fd {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.WGS.N C3L-00966 CCRCC WGS blood_normal CPT0100950002 CPT0100950002.WholeGenome.RP-1303.bam 61571459125 BAM submitted_aligned CPTAC3 e369dfe9-986e-4ead-937a-57312c164f01 758852865163076aeaa5672ff58158fa {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00966.WGS.N.hg38 C3L-00966 CCRCC WGS blood_normal CPT0100950002 ba2edf2f-c23f-47cb-a8c8-cf0110df4fe0_wgs_gdc_realn.bam 91384310737 BAM harmonized CPTAC3 0034826b-bd5e-40a7-9918-cba39f52d6ec 56f00268940520ccc8f32cfa2ac68a9a {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00966.WGS.T C3L-00966 CCRCC WGS tumor CPT0101310009 CPT0101310009.WholeGenome.RP-1303.bam 56129398017 BAM submitted_aligned CPTAC3 2891584e-7573-48d6-b30f-46451afbece6 7d102db70dc3bace4ac49b10f82742f5 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.WGS.T.hg38 C3L-00966 CCRCC WGS tumor CPT0101310009 f26c7002-5320-4a51-9f26-f8b0e703f019_wgs_gdc_realn.bam 81771555164 BAM harmonized CPTAC3 da5bbbe6-8e0f-43b9-a885-7c78b8fb698e 2b665f091545e483a7b04f26226b2530 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.WXS.A C3L-00966 CCRCC WXS tissue_normal CPT0101350006 CPT0101350006.WholeExome.RP-1303.bam 26539221363 BAM submitted_aligned CPTAC3 f0adb25b-1db8-43d5-be50-9175752371cb 2dbd19aad3a584ba717809c62ce415dc {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.WXS.A.hg38 C3L-00966 CCRCC WXS tissue_normal CPT0101350006 20b0ba65-fa9c-49ad-850d-d9f3e644a617_wxs_gdc_realn.bam 35906905747 BAM harmonized CPTAC3 1468e028-cb5d-468d-8873-459532bbe7b6 a2244c107dde5ebbcd33898130cf3d38 {"aliquot_tag": "ALQ_edc18d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00966.WXS.N C3L-00966 CCRCC WXS blood_normal CPT0100950002 CPT0100950002.WholeExome.RP-1303.bam 37253184915 BAM submitted_aligned CPTAC3 12a15929-a647-4a36-954f-3af32fef0155 87c46fdd9ff8b0b4922381c32f7020d6 {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00966.WXS.N.hg38 C3L-00966 CCRCC WXS blood_normal CPT0100950002 ba2edf2f-c23f-47cb-a8c8-cf0110df4fe0_wxs_gdc_realn.bam 51799214449 BAM harmonized CPTAC3 d73cde4d-17b5-44ea-9c2b-00e50d3f5f5b aea6f4df0abb2cc96ce503216d152fa2 {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00966.WXS.T C3L-00966 CCRCC WXS tumor CPT0101310009 CPT0101310009.WholeExome.RP-1303.bam 34346536786 BAM submitted_aligned CPTAC3 a876152a-33bb-42f0-b328-423dd2d625e8 fc2fbea8ca0dedf2d6b74e815c098c41 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00966.WXS.T.hg38 C3L-00966 CCRCC WXS tumor CPT0101310009 f26c7002-5320-4a51-9f26-f8b0e703f019_wxs_gdc_realn.bam 46758625621 BAM harmonized CPTAC3 c66a189e-1417-4892-8ef2-a8777f0cc796 2a839c653f2a1b0f696bfd16dbc4e7a9 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.MethArray.Green.A C3L-00968 CCRCC Methylation_Array tissue_normal CPT0101740006 204930630034_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7f386d4e-ce25-45e9-aa74-91f3dcb315a5 6068d83f77bc233919ac522ca5b4e700 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.MethArray.Green.T C3L-00968 CCRCC Methylation_Array tumor CPT0101710009 202234380099_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5a8536f4-7a02-40f6-9acf-90db94685872 dad4ce7ce307f69f1356214c6bffdb3d {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.MethArray.Red.A C3L-00968 CCRCC Methylation_Array tissue_normal CPT0101740006 204930630034_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 fc7b2404-e518-495b-bfd8-c9d2e72d2c43 5e24a94e8b9543da8ae37f67573ab6e7 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.MethArray.Red.T C3L-00968 CCRCC Methylation_Array tumor CPT0101710009 202234380099_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 29167e47-dda7-44d2-979a-97182d918686 0033d9cb22268c883a3446552e11e4e2 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.miRNA-Seq.A.hg38 C3L-00968 CCRCC miRNA-Seq tissue_normal CPT0101740009 f90cadf2-bfb9-4f16-aaf5-47e8fed1b7a0_mirnaseq_gdc_realn.bam 247004353 BAM harmonized CPTAC3 63177da8-2ff0-4c5e-9cf5-bc0734af7730 ec488034242a3fadfeb0d4e217e0c923 {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.miRNA-Seq.S30_L002_R1.T C3L-00968 CCRCC miRNA-Seq tumor CPT0101710006 181113_UNC31-K00269_0164_AH23NNBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 211803055 BAM S30_L002_R1 submitted_unaligned CPTAC3 a0e35251-59e8-418e-8473-329edb85840f 53e870be247594f0772346c5693928f3 {"aliquot_tag": "ALQ_60cdfc07", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.miRNA-Seq.S33_L002_R1.A C3L-00968 CCRCC miRNA-Seq tissue_normal CPT0101740009 181119_UNC31-K00269_0165_AH27WCBBXY_GATCAG_S33_L002_R1_001.unaln.bam 221301934 BAM S33_L002_R1 submitted_unaligned CPTAC3 d6354f59-2829-407e-a313-15cd0293cc41 3eedba0e36139e3b696e976f9d336d44 {"aliquot_tag": "ALQ_38926ee6", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.miRNA-Seq.T.hg38 C3L-00968 CCRCC miRNA-Seq tumor CPT0101710006 51d0bb48-1228-43c8-a28d-e59389184d55_mirnaseq_gdc_realn.bam 227413825 BAM harmonized CPTAC3 5df763c2-3928-44d2-83d2-0cca7dfb93a9 a46d4e1075333a48baadd021df78f1bc {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.RNA-Seq.chimeric.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.chimeric.gdc_realn.bam 31571200 BAM chimeric harmonized CPTAC3 e5666130-248d-46fc-a1d5-dcb91e304ad3 d4994640645bb9616cccf6e87255f9e5 {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.RNA-Seq.chimeric.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.chimeric.gdc_realn.bam 29913692 BAM chimeric harmonized CPTAC3 ce0fe8d6-e327-4044-834d-b5be266445e4 a40ff7c1be0619d8a389beebafdd6601 {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.RNA-Seq.genomic.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.genomic.gdc_realn.bam 8282559979 BAM genomic harmonized CPTAC3 f7123d95-e1c2-4493-9fae-14b392a62249 82c109e55966fc1b927b64d10a71328b {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.RNA-Seq.genomic.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.genomic.gdc_realn.bam 7513282715 BAM genomic harmonized CPTAC3 5c30d6cb-bb0d-4c72-906f-4076718518b1 01bf6aae3ab6089d7761763fd6a9a72d {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.RNA-Seq.S12_L003_R1.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3575855610 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 f25b9f8f-5e30-4124-afe0-729d77b3d245 edf6699fd96b019720bae13ca2ea7b58 {"aliquot_tag": "ALQ_60cdfc07", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.RNA-Seq.S12_L003_R2.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3924284333 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 2f1c5a8f-a3c4-4da6-ae04-a15168219c03 ffcddcd03fac5afa4ca5b7b3674cf1a8 {"aliquot_tag": "ALQ_60cdfc07", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.RNA-Seq.S3_L001_R1.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R1_001.fastq.gz 3713275274 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 7ae1bd60-dbef-45c0-85d7-e1d774293b68 0a27abd9e0d80b422f2a221ff20ee690 {"aliquot_tag": "ALQ_38926ee6", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.RNA-Seq.S3_L001_R2.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R2_001.fastq.gz 4213712821 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 63d85413-58af-4f8d-a1ad-6b3ddd79769e 8e35d753c5eee96e9dd89aaadbd15d5d {"aliquot_tag": "ALQ_38926ee6", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.RNA-Seq.transcriptome.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.transcriptome.gdc_realn.bam 10250163686 BAM transcriptome harmonized CPTAC3 70de3055-793f-4938-9a9a-87f2123a8ce9 f174738c90a813724815cbfb4d9c3c2f {"aliquot_tag": "ALQ_38926ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.RNA-Seq.transcriptome.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.transcriptome.gdc_realn.bam 11916801924 BAM transcriptome harmonized CPTAC3 67844d0f-b68b-49e6-8984-de7b4a343fff 35702d2c1f7180807a072b34a999d066 {"aliquot_tag": "ALQ_60cdfc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.scRNA-Seq.S6_L004_R1.T C3L-00968 CCRCC scRNA-Seq tumor CPT0101710013 20220404_WUSTL_TWHG-CPT0101710013-Y1N1Z1_1Bmn1_1_TTCTCGATGA+GTGCCCGACA_S6_L004_R1_001.fastq.gz 9796769135 FASTQ S6_L004_R1 submitted_unaligned CPTAC3 2206bb21-411a-46ab-94e6-a0ca92959b70 4b12c1ebc0206dd887ec78c954c7c867 {"aliquot_tag": "ALQ_9bc39c9", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00968.scRNA-Seq.S6_L004_R2.T C3L-00968 CCRCC scRNA-Seq tumor CPT0101710013 20220404_WUSTL_TWHG-CPT0101710013-Y1N1Z1_1Bmn1_1_TTCTCGATGA+GTGCCCGACA_S6_L004_R2_001.fastq.gz 36120752405 FASTQ S6_L004_R2 submitted_unaligned CPTAC3 0d553c4a-d2a9-4ba1-a33c-9cf52485f235 6ec355ac0249cb0750a062141fba2bd3 {"aliquot_tag": "ALQ_9bc39c9", "sample": "S6", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00968.WGS.A C3L-00968 CCRCC WGS tissue_normal CPT0101740006 CPT0101740006.WholeGenome.RP-1303.bam 64142342151 BAM submitted_aligned CPTAC3 8df5d7c8-7ce6-413b-8677-fd9d8b05a5e3 7edcd9272a53a65904aa5baff044f1ca {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.WGS.A.hg38 C3L-00968 CCRCC WGS tissue_normal CPT0101740006 19f28427-afc9-4483-8b66-c9593725b3c4_wgs_gdc_realn.bam 93567774209 BAM harmonized CPTAC3 cd580ac5-9490-4f80-9df4-e6b4dffafafd 99d68718ab415395cb89b7641b8d284f {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.WGS.N C3L-00968 CCRCC WGS blood_normal CPT0100990002 CPT0100990002.WholeGenome.RP-1303.bam 62557230591 BAM submitted_aligned CPTAC3 e8bf7eed-0992-4ca6-98e8-398383296d38 0d770e60779329c04469b572325ec29b {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00968.WGS.N.hg38 C3L-00968 CCRCC WGS blood_normal CPT0100990002 94ea658f-de60-479f-b2f0-349ba240d3b8_wgs_gdc_realn.bam 90953451881 BAM harmonized CPTAC3 ff053493-07cc-4998-859b-04ce0fdc824c 088965418353095579b685e550aacb7f {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00968.WGS.T C3L-00968 CCRCC WGS tumor CPT0101710009 CPT0101710009.WholeGenome.RP-1303.bam 55534194728 BAM submitted_aligned CPTAC3 82726a2b-b81c-4472-b4ec-56638150d8e4 6b311d6a4e5c003208f2bc09f24596b0 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.WGS.T.hg38 C3L-00968 CCRCC WGS tumor CPT0101710009 1193e39c-6246-46b6-9f68-5a45897acd51_wgs_gdc_realn.bam 82674648239 BAM harmonized CPTAC3 43ca03a2-8737-48c4-87ea-b2a3b63be2e9 cce0bd900dfc0ba91fced101f2913a63 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.WXS.A C3L-00968 CCRCC WXS tissue_normal CPT0101740006 CPT0101740006.WholeExome.RP-1303.bam 24847703772 BAM submitted_aligned CPTAC3 8cd98e0b-b702-4254-be80-6d5f046675db da88c6c43a3bc07df957e21ccc8a2f9f {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.WXS.A.hg38 C3L-00968 CCRCC WXS tissue_normal CPT0101740006 19f28427-afc9-4483-8b66-c9593725b3c4_wxs_gdc_realn.bam 33111006809 BAM harmonized CPTAC3 a7309acf-d34c-4d20-b364-a8616a69f303 28fa958d3f26822f7ca4f1f45c937678 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00968.WXS.N C3L-00968 CCRCC WXS blood_normal CPT0100990002 CPT0100990002.WholeExome.RP-1303.bam 41792116594 BAM submitted_aligned CPTAC3 80705b8a-f650-411a-9798-7eaa21f9b4ef 242280c80bdf46474370bdd978ca5410 {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00968.WXS.N.hg38 C3L-00968 CCRCC WXS blood_normal CPT0100990002 94ea658f-de60-479f-b2f0-349ba240d3b8_wxs_gdc_realn.bam 58084121165 BAM harmonized CPTAC3 2f8c2b97-e1b3-42ab-8177-8b3f86a9b5a9 2e8a858ee5c539e6e838e126381f01f3 {"aliquot_tag": "ALQ_cbad191b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00968.WXS.T C3L-00968 CCRCC WXS tumor CPT0101710009 CPT0101710009.WholeExome.RP-1303.bam 44712945733 BAM submitted_aligned CPTAC3 09ffe93b-e6e8-42e7-8618-91b1f6612e4a 39b0ff3cb08132b1f0976b2c9c333b35 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00968.WXS.T.hg38 C3L-00968 CCRCC WXS tumor CPT0101710009 1193e39c-6246-46b6-9f68-5a45897acd51_wxs_gdc_realn.bam 61368490861 BAM harmonized CPTAC3 2eeb7056-5840-4b0f-818e-ff1507aafcb8 f507cca900b1bb3e8f6962bc34fda9e4 {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.MethArray.Green.A C3L-00969 CCRCC Methylation_Array tissue_normal CPT0102070006 204930630068_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f3a1c364-449e-47ec-91f9-c31481345a5d f96271e039d1f6d50c5f0b47a55b99b3 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.MethArray.Green.T C3L-00969 CCRCC Methylation_Array tumor CPT0102010009 202234370086_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 45cd8dc5-88bc-4940-b403-b9e85e07c800 02031e64ea99ac7cf0b2df8896e51065 {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.MethArray.Red.A C3L-00969 CCRCC Methylation_Array tissue_normal CPT0102070006 204930630068_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 e88b106f-bdde-4fd5-b774-3c15c75724cb 0397e9e929349262005efdd45a38c444 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.MethArray.Red.T C3L-00969 CCRCC Methylation_Array tumor CPT0102010009 202234370086_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 4cd692b1-944d-4a2f-a559-48aebd54cca2 faf5733483f408a15b5caaadeddc138c {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.miRNA-Seq.A.hg38 C3L-00969 CCRCC miRNA-Seq tissue_normal CPT0102070009 314cf241-dd1b-4ba7-b766-b0e5aebf580a_mirnaseq_gdc_realn.bam 334939539 BAM harmonized CPTAC3 f82b516a-0b97-431e-a142-d5c04679213b 6edd687e2fc7fa178c3624b877786997 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.miRNA-Seq.S31_L002_R1.T C3L-00969 CCRCC miRNA-Seq tumor CPT0102010006 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L002_R1_001.unaln.bam 202629795 BAM S31_L002_R1 submitted_unaligned CPTAC3 8876b598-a49e-48a8-a442-a3dff5e22382 2f667b9dde90408d45ff9265db56a579 {"aliquot_tag": "ALQ_4c20d622", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.miRNA-Seq.S34_L002_R1.A C3L-00969 CCRCC miRNA-Seq tissue_normal CPT0102070009 181119_UNC31-K00269_0165_AH27WCBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 303659022 BAM S34_L002_R1 submitted_unaligned CPTAC3 255b014f-7444-4ae8-a81f-8dfdd7d786d9 e2939c35013ef487d863160e5e3ce4c7 {"aliquot_tag": "ALQ_53df3e13", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.miRNA-Seq.T.hg38 C3L-00969 CCRCC miRNA-Seq tumor CPT0102010006 246f1ea6-1f65-4e69-b2c0-a20b857add8e_mirnaseq_gdc_realn.bam 221832152 BAM harmonized CPTAC3 97d80874-3688-4bed-a230-82dfff16a264 3d050c54b2382378607a10dbe5728570 {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.RNA-Seq.chimeric.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.chimeric.gdc_realn.bam 42524755 BAM chimeric harmonized CPTAC3 95f819c0-3b31-4885-a9ac-bffa5c5c225f 6fbdb0e989382006a0bdfad13ce6a0d8 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.RNA-Seq.chimeric.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.chimeric.gdc_realn.bam 34791597 BAM chimeric harmonized CPTAC3 54c198d0-e61b-4183-a574-148aae7b17a4 e0bbcecef72b44bc4dad1cc3ade072bf {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.RNA-Seq.genomic.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.genomic.gdc_realn.bam 10941203631 BAM genomic harmonized CPTAC3 3d43c9f0-42f6-4a20-aa92-3e1fa18bc28a 7f2fe87026538bff840bc17dd9c8dab5 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.RNA-Seq.genomic.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.genomic.gdc_realn.bam 7892654597 BAM genomic harmonized CPTAC3 760d3675-ca15-4273-8250-23cd9f942b75 5b5099867570634ef26696dc428d2bc2 {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.RNA-Seq.S2_L001_R1.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4811687033 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 d71baec0-9645-4ba4-b0d4-beeeca043e61 a10de27f8c708243c5e9c6a2ecbf2465 {"aliquot_tag": "ALQ_53df3e13", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.RNA-Seq.S2_L001_R2.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5410316871 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 b14bd60b-7a02-408b-94fe-8ac900127f90 b44a9ebac612944e58dccb8614169988 {"aliquot_tag": "ALQ_53df3e13", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.RNA-Seq.S5_L002_R1.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3585790853 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 8191da59-7fb9-4d92-ab19-e29a27ff7618 955b1f2950215aa77673aa69540314e6 {"aliquot_tag": "ALQ_4c20d622", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.RNA-Seq.S5_L002_R2.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3975192505 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 86cbda91-e68a-44a8-9843-b4058c8dd7cf 9464d30a6406808ef9bf13f0f747dae8 {"aliquot_tag": "ALQ_4c20d622", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.RNA-Seq.transcriptome.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.transcriptome.gdc_realn.bam 13070353075 BAM transcriptome harmonized CPTAC3 550e9268-9515-411e-884e-a99f265f4ad3 e25ba5ae90d2677a6176de0eb650d797 {"aliquot_tag": "ALQ_53df3e13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.RNA-Seq.transcriptome.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.transcriptome.gdc_realn.bam 10800068983 BAM transcriptome harmonized CPTAC3 885f4961-a198-4610-a1ac-7409e715d73e 964ce6a885d058f0cc7888efc056ee1d {"aliquot_tag": "ALQ_4c20d622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.WGS.A C3L-00969 CCRCC WGS tissue_normal CPT0102070006 CPT0102070006.WholeGenome.RP-1303.bam 54316001799 BAM submitted_aligned CPTAC3 15587d85-160e-4f50-aeca-10533661811c a8c8809691f83ddd9c323361f7359c89 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.WGS.A.hg38 C3L-00969 CCRCC WGS tissue_normal CPT0102070006 5a206a66-23fe-4f18-a875-9f36ee98058a_wgs_gdc_realn.bam 78647664150 BAM harmonized CPTAC3 c959ca04-34c3-46b8-8326-bb8d625e9f53 1f4923fbbb105ae368bfc47a37e756c9 {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.WGS.N C3L-00969 CCRCC WGS blood_normal CPT0101010002 CPT0101010002.WholeGenome.RP-1303.bam 67580610441 BAM submitted_aligned CPTAC3 c78869ef-6540-4d9d-82cc-412b3ba1626e f4582d48e9707fecb553a1989c569362 {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00969.WGS.N.hg38 C3L-00969 CCRCC WGS blood_normal CPT0101010002 5611d5c1-d2cf-4543-9aac-b4e554d5c5d6_wgs_gdc_realn.bam 100038847882 BAM harmonized CPTAC3 50b726a5-d7ac-4259-8722-1b4176af3ec5 5ecf3cd0ae2636636ab24befe8cfeb3b {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00969.WGS.T C3L-00969 CCRCC WGS tumor CPT0102010009 CPT0102010009.WholeGenome.RP-1303.bam 61067151832 BAM submitted_aligned CPTAC3 e1d12569-e2af-4c41-b1d6-04551fbdf95b 6bf54be13c3741735ab500427744b99f {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.WGS.T.hg38 C3L-00969 CCRCC WGS tumor CPT0102010009 0504094f-f1e5-4452-802b-54858371ebf4_wgs_gdc_realn.bam 89445654775 BAM harmonized CPTAC3 e9ab4e32-b8b7-4d50-87a9-e041a11fbbd8 ec792c41b1ffe0e31af473db4e5b934e {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.WXS.A C3L-00969 CCRCC WXS tissue_normal CPT0102070006 CPT0102070006.WholeExome.RP-1303.bam 32562978510 BAM submitted_aligned CPTAC3 1bf29e4f-d77f-456b-b889-40db77569f35 542663a374d9d70e712f53a5aab0320c {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.WXS.A.hg38 C3L-00969 CCRCC WXS tissue_normal CPT0102070006 5a206a66-23fe-4f18-a875-9f36ee98058a_wxs_gdc_realn.bam 43985573761 BAM harmonized CPTAC3 3ca6ae90-5f4e-4798-922a-327b23ee9f30 9390db2518b5f39b371417f7ccf7c07a {"aliquot_tag": "ALQ_c3602382", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00969.WXS.N C3L-00969 CCRCC WXS blood_normal CPT0101010002 CPT0101010002.WholeExome.RP-1303.bam 42047154970 BAM submitted_aligned CPTAC3 1dd59b72-34a9-4717-b5b4-be0746b4a220 7600f6ff2f5f4a712cd2d2d35d1c2c5c {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00969.WXS.N.hg38 C3L-00969 CCRCC WXS blood_normal CPT0101010002 5611d5c1-d2cf-4543-9aac-b4e554d5c5d6_wxs_gdc_realn.bam 56889971179 BAM harmonized CPTAC3 932a51c9-7f60-4c9d-912a-15b1c13ea0c1 3eec0b9b8d53a1eb4e44492b05d38e07 {"aliquot_tag": "ALQ_7aa508a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00969.WXS.T C3L-00969 CCRCC WXS tumor CPT0102010009 CPT0102010009.WholeExome.RP-1303.bam 26081709366 BAM submitted_aligned CPTAC3 15661192-9662-4e3d-b959-106b5d864f6c 75c9b790ae563c8fd6138716be1adc73 {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00969.WXS.T.hg38 C3L-00969 CCRCC WXS tumor CPT0102010009 0504094f-f1e5-4452-802b-54858371ebf4_wxs_gdc_realn.bam 35300972086 BAM harmonized CPTAC3 8657feac-38e8-480b-95da-c939e6e56ab0 71dd983a69df31eba889f3189d0a2f44 {"aliquot_tag": "ALQ_dc9fcbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.MethArray.Green.A C3L-00970 CCRCC Methylation_Array tissue_normal CPT0102280006 204930630114_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d732b7d4-3051-446e-982b-9c1fbe290bc3 6d992735635e408ccd60e2764495aaa6 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.MethArray.Green.T C3L-00970 CCRCC Methylation_Array tumor CPT0102240009 202234380017_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 003a7878-09f2-4d1c-8b13-05d519b8b52e b4050ff34851b81c24ffb8d75555f728 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.MethArray.Red.A C3L-00970 CCRCC Methylation_Array tissue_normal CPT0102280006 204930630114_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 e21901a8-a915-4296-9164-bbafb5c7999a f37abdf18590c05d5cc85d3826c62745 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.MethArray.Red.T C3L-00970 CCRCC Methylation_Array tumor CPT0102240009 202234380017_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 60f6078e-d7b2-46d3-9c32-1f7bedea4df8 b7764ba30cf14d02df57a582367cbff7 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.miRNA-Seq.A.hg38 C3L-00970 CCRCC miRNA-Seq tissue_normal CPT0102280009 8f5ed2ae-3b7e-458d-8295-c5a0b4bc3686_mirnaseq_gdc_realn.bam 316468477 BAM harmonized CPTAC3 8dcc72ff-7332-4f47-8f45-aed9b76ac4ac f0bf32a860415e13bb9bf78653e91a57 {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.miRNA-Seq.S16_L003_R1.T C3L-00970 CCRCC miRNA-Seq tumor CPT0102240006 181113_UNC31-K00269_0164_AH23NNBBXY_CTCAGA_S16_L003_R1_001.unaln.bam 221501923 BAM S16_L003_R1 submitted_unaligned CPTAC3 c250f932-1279-4482-ba5e-1d42498e6df2 34b5c6e42659e29081c6a783a0b91df2 {"aliquot_tag": "ALQ_c908f859", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.miRNA-Seq.S35_L002_R1.A C3L-00970 CCRCC miRNA-Seq tissue_normal CPT0102280009 181119_UNC31-K00269_0165_AH27WCBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 282502606 BAM S35_L002_R1 submitted_unaligned CPTAC3 1a535b1e-fdad-4548-8c5a-aeb3cecd4656 eae0e8f4da84715c2ac57988d9a1d46a {"aliquot_tag": "ALQ_9c4708c9", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.miRNA-Seq.T.hg38 C3L-00970 CCRCC miRNA-Seq tumor CPT0102240006 3700ab0e-8fc8-49c0-af61-d0a6164cd3c8_mirnaseq_gdc_realn.bam 250267244 BAM harmonized CPTAC3 4f12ce47-19d4-46a0-b5bf-3c161bd7948d 1f2a2d809abefae8a96006b5d2c7dc1b {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.RNA-Seq.chimeric.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.chimeric.gdc_realn.bam 36258165 BAM chimeric harmonized CPTAC3 1e5971c9-ebee-4497-ae12-c153010f3003 b7b37e2d9613ac25dbf9ad63de45f3ac {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.RNA-Seq.chimeric.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.chimeric.gdc_realn.bam 31458537 BAM chimeric harmonized CPTAC3 5116e40f-3d11-488f-8a57-07e4fa9c7dee 17d2e306cda25b2e655820c68823aeed {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.RNA-Seq.genomic.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.genomic.gdc_realn.bam 10256570338 BAM genomic harmonized CPTAC3 2bc7677d-d44a-408e-8e14-81fa7e18da87 fb45123c43a430bb266743ab4526d393 {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.RNA-Seq.genomic.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.genomic.gdc_realn.bam 8404271926 BAM genomic harmonized CPTAC3 394817ae-5d79-426e-8689-e056772dcaee 2cab4e4a751ab69e17f34298ee3ca5cf {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.RNA-Seq.S1_L001_R1.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4103117952 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 c72b97fd-e051-471e-a83c-37674479d7e8 21723dc9204ae71b3ee585708221d5cf {"aliquot_tag": "ALQ_9c4708c9", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.RNA-Seq.S1_L001_R2.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4789445691 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 2388d568-7a9a-41db-93db-8e173548c323 883fccf9a035e9876b0ef7a9a18eb67a {"aliquot_tag": "ALQ_9c4708c9", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.RNA-Seq.S6_L002_R1.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3904880581 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 eee4375e-6405-43a0-9df9-dd7c1dc7a590 74195878379f842127951832ba71646a {"aliquot_tag": "ALQ_c908f859", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.RNA-Seq.S6_L002_R2.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4363680591 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 eb10a154-b057-416d-ba22-2d8e09b5ba67 ef2b610e9d0cf943bf23ad068d6e00c6 {"aliquot_tag": "ALQ_c908f859", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.RNA-Seq.transcriptome.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.transcriptome.gdc_realn.bam 10779807311 BAM transcriptome harmonized CPTAC3 11379878-7d32-4248-a1bd-5cb168aab363 a6eaf1080ef1082e66b1ce283a80c010 {"aliquot_tag": "ALQ_9c4708c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.RNA-Seq.transcriptome.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.transcriptome.gdc_realn.bam 10838156962 BAM transcriptome harmonized CPTAC3 aef26d2e-3fa0-45f1-a774-34c95182d436 21c77edad21d781679011e0cb20247fa {"aliquot_tag": "ALQ_c908f859", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.WGS.A C3L-00970 CCRCC WGS tissue_normal CPT0102280006 CPT0102280006.WholeGenome.RP-1303.bam 61604359960 BAM submitted_aligned CPTAC3 2bd25292-8fcf-4f09-b252-13a378b310e8 c6aecf4d1995b5512e3708d260bdfea0 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.WGS.A.hg38 C3L-00970 CCRCC WGS tissue_normal CPT0102280006 2b440467-5dea-4683-8499-db738bd1eba9_wgs_gdc_realn.bam 89305971491 BAM harmonized CPTAC3 f230596d-752e-4c3e-875a-275b904eddc7 a9aaf5ae97db9bed067d9252b8a44196 {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.WGS.N C3L-00970 CCRCC WGS blood_normal CPT0101030002 CPT0101030002.WholeGenome.RP-1303.bam 56917246510 BAM submitted_aligned CPTAC3 2f4ce378-9e82-49bc-b041-cd5e15812b2c cab80dfedb96bb66e0dfaa365818bdb4 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00970.WGS.N.hg38 C3L-00970 CCRCC WGS blood_normal CPT0101030002 136f342e-618f-48c7-9789-e627a84526d6_wgs_gdc_realn.bam 85039427128 BAM harmonized CPTAC3 2dda5d69-9a9e-45a1-ad6b-745268c1c5e4 6c2a6b1d6e33a01c49643eb2f05cb3a1 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00970.WGS.T C3L-00970 CCRCC WGS tumor CPT0102240009 CPT0102240009.WholeGenome.RP-1303.bam 62871430614 BAM submitted_aligned CPTAC3 0b3f0a19-ba06-4b3c-8250-3fb083e6dae8 e76ecb9a89c0415d5ed494f417cd5354 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.WGS.T.hg38 C3L-00970 CCRCC WGS tumor CPT0102240009 6e2e4c4a-3686-4a3d-b09f-b7c7a212ce65_wgs_gdc_realn.bam 91983045766 BAM harmonized CPTAC3 e6757b3d-ca42-43b2-91b5-2564f2fc038a c7d249eeea3c04df6eda6188e93cbc89 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.WXS.A C3L-00970 CCRCC WXS tissue_normal CPT0102280006 CPT0102280006.WholeExome.RP-1303.bam 30668611346 BAM submitted_aligned CPTAC3 d5507536-6c94-4274-abb8-df585c1663f7 243a79fe40b2008084cd636d4863798b {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.WXS.A.hg38 C3L-00970 CCRCC WXS tissue_normal CPT0102280006 2b440467-5dea-4683-8499-db738bd1eba9_wxs_gdc_realn.bam 40701316796 BAM harmonized CPTAC3 cceb8df3-3ce8-40b7-a15f-19f6c601b90a 1b223413331cfe109505cd1348a7235f {"aliquot_tag": "ALQ_cf81558", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00970.WXS.N C3L-00970 CCRCC WXS blood_normal CPT0101030002 CPT0101030002.WholeExome.RP-1303.bam 42193316538 BAM submitted_aligned CPTAC3 7a7e348b-9850-4823-92ae-3be19e49fdb3 02f1003cc5ed9fff58270a218460d729 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00970.WXS.N.hg38 C3L-00970 CCRCC WXS blood_normal CPT0101030002 136f342e-618f-48c7-9789-e627a84526d6_wxs_gdc_realn.bam 57510266487 BAM harmonized CPTAC3 18f64221-b89d-419e-ac37-b2c97aefeb2a 7ff43be7487e2cf0f6acd162d89d29c4 {"aliquot_tag": "ALQ_655bc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00970.WXS.T C3L-00970 CCRCC WXS tumor CPT0102240009 CPT0102240009.WholeExome.RP-1303.bam 30660620816 BAM submitted_aligned CPTAC3 c254b35d-f836-445b-b507-31dfc59f1bb0 8c8025134267de130523faea253d6c6c {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00970.WXS.T.hg38 C3L-00970 CCRCC WXS tumor CPT0102240009 6e2e4c4a-3686-4a3d-b09f-b7c7a212ce65_wxs_gdc_realn.bam 41661750429 BAM harmonized CPTAC3 d131ff80-06ff-430c-bcc6-05ab73189502 a58e12a2615e4f0398900ff3960ea282 {"aliquot_tag": "ALQ_59b7e5c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.MethArray.Green.A C3L-00973 LUAD Methylation_Array tissue_normal CPT0102480009 203028200048_R03C01_Grn.idat 13676238 IDAT Green NA CPTAC3 2f855940-b18f-4a2d-8a62-95714cc3512c d5617255152a32fc31e6ea877a62bddd {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.MethArray.Green.T C3L-00973 LUAD Methylation_Array tumor CPT0102450009 202234380062_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e8fe55fe-b2e0-4377-8638-239311067b24 2451a41674be52342db2e24b902fc57a {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.MethArray.Red.A C3L-00973 LUAD Methylation_Array tissue_normal CPT0102480009 203028200048_R03C01_Red.idat 13676238 IDAT Red NA CPTAC3 445b072b-44a4-4ae3-95c2-2f8a290ccc96 3acdf50b6d3863a5227ad2ee19dbf6fa {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.MethArray.Red.T C3L-00973 LUAD Methylation_Array tumor CPT0102450009 202234380062_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 adf481be-f7c0-478b-8e6c-92a2627150f3 3f64f6b33220426853457ac05d40dbb0 {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.miRNA-Seq.A.hg38 C3L-00973 LUAD miRNA-Seq tissue_normal CPT0102480006 1c15f6bb-bf66-4c73-a140-e6735d73181b_mirnaseq_gdc_realn.bam 205995660 BAM harmonized CPTAC3 5f4de5ba-00d7-4ece-b731-ed8688ed7d2a 24d835128b75395e6a5ea99f4d478b8b {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.miRNA-Seq.S32_L002_R1.T C3L-00973 LUAD miRNA-Seq tumor CPT0102450006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTTGA_S32_L002_R1_001.unaln.bam 201419237 BAM S32_L002_R1 submitted_unaligned CPTAC3 faf5b1f6-a765-4f43-ad06-3b0f9e33bfc1 ea8926bd1dfca5cd4d33204d2151127f {"aliquot_tag": "ALQ_223132f4", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.miRNA-Seq.S43_L002_R1.A C3L-00973 LUAD miRNA-Seq tissue_normal CPT0102480006 181108_UNC31-K00269_0163_BH23TVBBXY_TACAGC_S43_L002_R1_001.unaln.bam 183330432 BAM S43_L002_R1 submitted_unaligned CPTAC3 fd7e0fc5-d407-44ea-b8a0-0c8d7b483787 574237ea956fb8bbc37b00033946429e {"aliquot_tag": "ALQ_daa1f645", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.miRNA-Seq.T.hg38 C3L-00973 LUAD miRNA-Seq tumor CPT0102450006 53d196ae-c941-42cb-ab49-b231ae30842e_mirnaseq_gdc_realn.bam 223681438 BAM harmonized CPTAC3 34fe47a5-d41f-48a6-8c2d-0efeeb6e1d31 8ab08a032207065c16c69b8c5c79a437 {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.RNA-Seq.chimeric.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.chimeric.gdc_realn.bam 38606310 BAM chimeric harmonized CPTAC3 7fad1b0b-1a71-4373-a8eb-554755c2b5e1 ea4f20f87bfced1418034848de24b5bb {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.RNA-Seq.chimeric.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.chimeric.gdc_realn.bam 30242420 BAM chimeric harmonized CPTAC3 846dac18-82ef-4259-9b12-e5b7e1cf3010 03852364f8a4feb286b9364d2e8ab24f {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.RNA-Seq.genomic.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.genomic.gdc_realn.bam 6629267678 BAM genomic harmonized CPTAC3 9f751729-e50f-4f16-8ba8-cde05b7ea90f 5307f351af35e059f51ade024850cc56 {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.RNA-Seq.genomic.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.genomic.gdc_realn.bam 8909848053 BAM genomic harmonized CPTAC3 24217a82-e4dd-4444-893b-4f88e3035383 7163c60ef4834d15d3bcb057a349d056 {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.RNA-Seq.S19_L005_R1.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 3382647784 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 6afb7982-855b-4f29-8cb9-65348024e16b 602079e37788350e38b4dd1f574d2c3b {"aliquot_tag": "ALQ_daa1f645", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.RNA-Seq.S19_L005_R2.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 3570586126 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 8a6f24e8-d172-4d34-a3a5-34aaf06cc554 deccf68219918a1b8decc2ec33daff32 {"aliquot_tag": "ALQ_daa1f645", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.RNA-Seq.S8_L002_R1.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4080024026 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 dde76172-11ea-42ed-b376-abb20a41fcbd c5539a84f7a8f742be3ecf56853efe39 {"aliquot_tag": "ALQ_223132f4", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.RNA-Seq.S8_L002_R2.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4508756621 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 f5ac887f-57cc-4f16-97af-b2bc03591d05 5542f1f80c8a85261d325eac3170bb78 {"aliquot_tag": "ALQ_223132f4", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.RNA-Seq.transcriptome.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.transcriptome.gdc_realn.bam 8169214512 BAM transcriptome harmonized CPTAC3 80e20b9a-73da-44f4-b028-c9163eb81fbe b39444c52e3876a5b6c5081a93427007 {"aliquot_tag": "ALQ_daa1f645", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.RNA-Seq.transcriptome.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.transcriptome.gdc_realn.bam 10761312468 BAM transcriptome harmonized CPTAC3 0bbe28e7-e2fa-4073-8a52-1d8be82c899f cbd8ad736e4794fe5e82ebfa162d0f91 {"aliquot_tag": "ALQ_223132f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.WGS.A C3L-00973 LUAD WGS tissue_normal CPT0102480009 CPT0102480009.WholeGenome.RP-1303.bam 62289238241 BAM submitted_aligned CPTAC3 2ec77b83-b306-4799-a3a5-59f553416ea3 96b90b77e40958d11241780486bc651d {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.WGS.A.hg38 C3L-00973 LUAD WGS tissue_normal CPT0102480009 a5d626de-da00-4c72-877a-1d9e2a6ea6d0_wgs_gdc_realn.bam 90654770367 BAM harmonized CPTAC3 3fe84cdc-f13d-43e0-8bfa-6608e8bb45b3 8bd6d70dcdf443ecfbb26807fa547cf8 {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.WGS.N C3L-00973 LUAD WGS blood_normal CPT0101050002 CPT0101050002.WholeGenome.RP-1303.bam 56530670347 BAM submitted_aligned CPTAC3 3c30835c-01ee-4b84-94e4-58796cfc1965 5ade04d2c1a7f3dbbff3035dcde08578 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00973.WGS.N.hg38 C3L-00973 LUAD WGS blood_normal CPT0101050002 4ae4f34f-1fdd-46ce-8b23-e7558b3f2a92_wgs_gdc_realn.bam 82060420662 BAM harmonized CPTAC3 471ef584-8629-4a6a-9bdb-1e4631cc1123 2c8f7c5b154a0bd91e44e3d0fcfba508 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00973.WGS.T C3L-00973 LUAD WGS tumor CPT0102450009 CPT0102450009.WholeGenome.RP-1303.bam 56092350571 BAM submitted_aligned CPTAC3 a0bcb953-f458-4012-8ccf-577dcf4acbc6 581707c1c3686e879320e6f4247b8765 {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.WGS.T.hg38 C3L-00973 LUAD WGS tumor CPT0102450009 d76dbd49-7705-404a-a526-36c29dc4b2e5_wgs_gdc_realn.bam 82744436486 BAM harmonized CPTAC3 5eeb8459-f031-4c2b-b235-381c69f26c22 2ba2a0f9b12335233c6b3d8d45c6c22c {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.WXS.A C3L-00973 LUAD WXS tissue_normal CPT0102480009 CPT0102480009.WholeExome.RP-1303.bam 42590522427 BAM submitted_aligned CPTAC3 b7ffbcdd-9493-4578-83e4-9de9147d5929 bd980190efcba1bf6fb38c893f0bb331 {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.WXS.A.hg38 C3L-00973 LUAD WXS tissue_normal CPT0102480009 a5d626de-da00-4c72-877a-1d9e2a6ea6d0_wxs_gdc_realn.bam 57135015167 BAM harmonized CPTAC3 2e16175d-3a13-434e-b3f9-8f266f19e9fb 2d3f8d2406e30943164f3f07eddd1960 {"aliquot_tag": "ALQ_4a1eebd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00973.WXS.N C3L-00973 LUAD WXS blood_normal CPT0101050002 CPT0101050002.WholeExome.RP-1303.bam 31805651609 BAM submitted_aligned CPTAC3 a8d2cf1a-472a-4bc7-8c01-aec55455ea9c 11c0765b9d6bef5666eec6fb4b441ed0 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00973.WXS.N.hg38 C3L-00973 LUAD WXS blood_normal CPT0101050002 4ae4f34f-1fdd-46ce-8b23-e7558b3f2a92_wxs_gdc_realn.bam 42320130711 BAM harmonized CPTAC3 bbf65579-b6c1-4b1f-81fa-8baad63d7e19 c3f53d17333590a1d012e59272e55706 {"aliquot_tag": "ALQ_8f25ae66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00973.WXS.T C3L-00973 LUAD WXS tumor CPT0102450009 CPT0102450009.WholeExome.RP-1303.bam 37014647299 BAM submitted_aligned CPTAC3 ce191997-0781-421a-b02e-8ae870697ae0 fcd91c7eb2f228cab571283fc79e2479 {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00973.WXS.T.hg38 C3L-00973 LUAD WXS tumor CPT0102450009 d76dbd49-7705-404a-a526-36c29dc4b2e5_wxs_gdc_realn.bam 50342118691 BAM harmonized CPTAC3 0e52d04e-f841-4e3b-9a00-00bfbb5b4fae 47c6daf09722b7411d84a16a7d95a67a {"aliquot_tag": "ALQ_b28e2f65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.MethArray.Green.A C3L-00976 CCRCC Methylation_Array tissue_normal CPT0169550006 204930630081_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 d70df072-73c1-458a-936b-ae328d3c0806 4b9e5d41e4ea6c40ebd58b61d5be1535 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.MethArray.Green.T C3L-00976 CCRCC Methylation_Array tumor CPT0169530006 203219670180_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 e4e38ce9-5760-461f-bc8d-a30c476ccbcd 48fd4e7a20f08ed78ed6ef7a045bbc13 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.MethArray.Red.A C3L-00976 CCRCC Methylation_Array tissue_normal CPT0169550006 204930630081_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 ad68da72-2f16-458e-bc0a-654247a02d37 6a03da3a768ac5b94d53dedc054c20e5 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.MethArray.Red.T C3L-00976 CCRCC Methylation_Array tumor CPT0169530006 203219670180_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 cc37f90f-3e9e-4c95-ba3b-32fdc5eee367 bea1dee857d019f91174c582192392a1 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.miRNA-Seq.A.hg38 C3L-00976 CCRCC miRNA-Seq tissue_normal CPT0169550009 74470bc5-dd47-4fe4-ad5a-fea836abe0cf_mirnaseq_gdc_realn.bam 250763002 BAM harmonized CPTAC3 f6e90b1d-7d87-401e-a1f6-a6a2e846420f a8081b1c31a8c54dceebd66454caf6a7 {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.miRNA-Seq.S15_L002_R1.A C3L-00976 CCRCC miRNA-Seq tissue_normal CPT0169550009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L002_R1_001.unaln.bam 230806608 BAM S15_L002_R1 submitted_unaligned CPTAC3 9ab665e7-0f7a-4638-8a58-12ecfac17a45 fcc17fde43dbf4ce561774eaa68f4ca6 {"aliquot_tag": "ALQ_bdbaa1bd", "sample": "S15", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.RNA-Seq.chimeric.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.chimeric.gdc_realn.bam 130694466 BAM chimeric harmonized CPTAC3 4829958d-2b27-42c4-be06-49b712bb2a22 0b9e3eda36462fb4ba268cc1b222c82c {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.RNA-Seq.chimeric.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.chimeric.gdc_realn.bam 26652714 BAM chimeric harmonized CPTAC3 14d03110-7a33-44fe-9b93-5c3ed7fc4f39 78afc6df01a842c65c28d8edad09aa0f {"aliquot_tag": "ALQ_32fa541d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.RNA-Seq.genomic.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.genomic.gdc_realn.bam 9861345934 BAM genomic harmonized CPTAC3 8f9f35a1-ad88-44ae-b825-72831cd9f353 9a6f421cb3c44647a2691157c3bb33a3 {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.RNA-Seq.genomic.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.genomic.gdc_realn.bam 6007219957 BAM genomic harmonized CPTAC3 eaf2fb8f-a701-46e2-bb0f-51153e72e7f4 264ed2db2f3436b533f7d3fe4b7d5d52 {"aliquot_tag": "ALQ_32fa541d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.RNA-Seq.S10_L003_R1.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 3081439503 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 8a2053e0-f076-466e-b4f4-d543d905dab2 7790b01c910f96e4cfe33efd8f7ee851 {"aliquot_tag": "ALQ_32fa541d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.RNA-Seq.S10_L003_R2.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 3227003334 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 e1950e0d-42f3-46c4-8263-22f695311fab 2a7061e876114259268c6b268f69b562 {"aliquot_tag": "ALQ_32fa541d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.RNA-Seq.S14_L006_R1.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R1_001.fastq.gz 4347968784 FASTQ S14_L006_R1 submitted_unaligned CPTAC3 1a199184-989d-43da-b65f-0465fd0cb533 e306418eb5e8ecc117e0256197bbee0f {"aliquot_tag": "ALQ_bdbaa1bd", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.RNA-Seq.S14_L006_R2.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R2_001.fastq.gz 4723750748 FASTQ S14_L006_R2 submitted_unaligned CPTAC3 7358fbaa-cace-45ef-9ee9-6c16db5ad038 c5bcb5e02a6904776da704d22c3fa7c7 {"aliquot_tag": "ALQ_bdbaa1bd", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.RNA-Seq.transcriptome.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.transcriptome.gdc_realn.bam 10906745804 BAM transcriptome harmonized CPTAC3 2edea369-f9ed-4def-8ff0-19270acda64d 98af7358fd40e7558cb4af9bd534fdb9 {"aliquot_tag": "ALQ_bdbaa1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.RNA-Seq.transcriptome.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.transcriptome.gdc_realn.bam 8513342764 BAM transcriptome harmonized CPTAC3 5db823b1-523b-45a0-9c94-60c505c7af34 50ad5117c67851794e703e0f324c29ff {"aliquot_tag": "ALQ_32fa541d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.WGS.A C3L-00976 CCRCC WGS tissue_normal CPT0169550006 CPT0169550006.WholeGenome.RP-1303.bam 60104283764 BAM submitted_aligned CPTAC3 4585ff5a-8aab-417a-ba31-6f05adcebadc 9c60ce4ea5986550712f4f3991952090 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.WGS.A.hg38 C3L-00976 CCRCC WGS tissue_normal CPT0169550006 12b82e88-1e23-48e6-8d3d-e180d3d952be_wgs_gdc_realn.bam 87834237905 BAM harmonized CPTAC3 963033ca-b255-486d-80bc-854752529110 1030202bc8e2afae98c6b00c8510add8 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.WGS.N C3L-00976 CCRCC WGS blood_normal CPT0167130002 CPT0167130002.WholeGenome.RP-1303.bam 55013882431 BAM submitted_aligned CPTAC3 e61e0379-f61b-4a88-af05-638b3bce2256 edeb86d81a4acc7bd107eaf6a894f747 {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00976.WGS.N.hg38 C3L-00976 CCRCC WGS blood_normal CPT0167130002 f1ebce9b-ce42-47c8-a9f6-ab986671ea3b_wgs_gdc_realn.bam 80787995548 BAM harmonized CPTAC3 5ff39522-a8d7-48f6-9bb8-5adfca2172e2 7905d4cd95691620b1a79e6cae67cf0b {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00976.WGS.T C3L-00976 CCRCC WGS tumor CPT0169530006 CPT0169530006.WholeGenome.RP-1303.bam 53782560741 BAM submitted_aligned CPTAC3 6731e1fe-a32b-458d-89f8-264e5482fbc3 304c521016ce9c1fbe4f1f1ced814167 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.WGS.T.hg38 C3L-00976 CCRCC WGS tumor CPT0169530006 52ac9c21-85f5-4f76-8527-2dbab9167bc0_wgs_gdc_realn.bam 78516368830 BAM harmonized CPTAC3 fd7bebcd-98c7-4723-b549-9f3a2416342f f0b1b092e65b6fa14255ce30466ed3bc {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.WXS.A C3L-00976 CCRCC WXS tissue_normal CPT0169550006 CPT0169550006.WholeExome.RP-1303.bam 19995620092 BAM submitted_aligned CPTAC3 b0a1603b-89fc-4fe3-b282-239312503ea5 8c8c56e341b53770180bbbea755c4628 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.WXS.A.hg38 C3L-00976 CCRCC WXS tissue_normal CPT0169550006 12b82e88-1e23-48e6-8d3d-e180d3d952be_wxs_gdc_realn.bam 28275463252 BAM harmonized CPTAC3 1905b40e-cfca-4b56-8dc8-182514ad646a 71a31a6055a2527f29245e618c9da818 {"aliquot_tag": "ALQ_2d05bc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00976.WXS.N C3L-00976 CCRCC WXS blood_normal CPT0167130002 CPT0167130002.WholeExome.RP-1303.bam 23215594839 BAM submitted_aligned CPTAC3 eae50e77-d7d0-407e-a035-66b077d86b5f d21d920ad40f335efddc3a9a057dbff6 {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00976.WXS.N.hg38 C3L-00976 CCRCC WXS blood_normal CPT0167130002 f1ebce9b-ce42-47c8-a9f6-ab986671ea3b_wxs_gdc_realn.bam 32609491520 BAM harmonized CPTAC3 d1591991-7fdb-41c0-899b-4377dccb1337 a79c767ae35e4dd4aa0a0cdebca6a7b5 {"aliquot_tag": "ALQ_6e86b4de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00976.WXS.T C3L-00976 CCRCC WXS tumor CPT0169530006 CPT0169530006.WholeExome.RP-1303.bam 23165365637 BAM submitted_aligned CPTAC3 f868468c-e8c0-4ba1-8f14-a2cad87f332d d339079ed7f8780f288a1f766dae5d85 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00976.WXS.T.hg38 C3L-00976 CCRCC WXS tumor CPT0169530006 52ac9c21-85f5-4f76-8527-2dbab9167bc0_wxs_gdc_realn.bam 31915013237 BAM harmonized CPTAC3 a47eb566-f097-4d1b-af60-df129ec5e11c d723fa0bf9eedd254d2797a38b9bafb5 {"aliquot_tag": "ALQ_a245498c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.MethArray.Green.A C3L-00977 HNSCC Methylation_Array tissue_normal CPT0169650006 203271750010_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e99695cc-399a-4c57-a6af-d33f4c6eed9d cf4639cd88858bbcd555a1da4069acd4 {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.MethArray.Green.T C3L-00977 HNSCC Methylation_Array tumor CPT0169640006 203219650071_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d8f0ba41-ae39-482a-a362-c20391bd9c9d 085d799bb33520c6c52c00e5b25fe6d1 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.MethArray.Red.A C3L-00977 HNSCC Methylation_Array tissue_normal CPT0169650006 203271750010_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 675cb06a-d96f-4f3a-9f70-f37595ea532d ee9bfd64fcb1987aeb6445927a4ffdae {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.MethArray.Red.T C3L-00977 HNSCC Methylation_Array tumor CPT0169640006 203219650071_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 cf417715-8bca-4196-940c-265902d9db00 852dfa5bc3fef9d0544902299feb3d52 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.miRNA-Seq.A.hg38 C3L-00977 HNSCC miRNA-Seq tissue_normal CPT0169650008 07c1c0e7-a96e-4ed8-8a9a-f12764790406_mirnaseq_gdc_realn.bam 252960813 BAM harmonized CPTAC3 a4556e08-acca-4132-b972-3c3b9efb2471 50ffa194e5b3f0da8a70dd692ef8be88 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.miRNA-Seq.S36_L002_R1.T C3L-00977 HNSCC miRNA-Seq tumor CPT0169640009 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L002_R1_001.unaln.bam 273428688 BAM S36_L002_R1 submitted_unaligned CPTAC3 a3c9b316-3105-4136-82e5-202db7a69a5b 051ca6cb6eeb09a73117f1fb461e4796 {"aliquot_tag": "ALQ_64efaa3", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.miRNA-Seq.S40_L002_R1.A C3L-00977 HNSCC miRNA-Seq tissue_normal CPT0169650008 190228_UNC32-K00270_0151_AHYLY3BBXX_CTCAGA_S40_L002_R1_001.unaln.bam 221320582 BAM S40_L002_R1 submitted_unaligned CPTAC3 565cb06c-4fce-4e60-a44a-1a435f03a674 2c3786574e36cc96924596b06b4c0c80 {"aliquot_tag": "ALQ_4c29e385", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.miRNA-Seq.T.hg38 C3L-00977 HNSCC miRNA-Seq tumor CPT0169640009 0992ab07-5423-4e81-8a70-f97ace23d8e7_mirnaseq_gdc_realn.bam 303737852 BAM harmonized CPTAC3 596b3c93-1e7b-44e1-9df6-add41ec22dad a7dae07e528c85c12fb66ad6eb636ded {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.chimeric.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.chimeric.gdc_realn.bam 55928106 BAM chimeric harmonized CPTAC3 57f2bd66-6fd0-4e77-b76b-450cf306797a b7d08bfcdbfff1a560b6c4de63bf0651 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.RNA-Seq.chimeric.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.chimeric.gdc_realn.bam 107431441 BAM chimeric harmonized CPTAC3 2cb0f4eb-fe24-422c-b593-f46a9f70cda4 1fe0c2154843a4313b50c9ff15223e28 {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.chimeric.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.chimeric.gdc_realn.bam 296388281 BAM chimeric harmonized CPTAC3 1546a2f1-4c1c-46e8-af5d-77db2626ba52 95cac5489ddbc2d6a8412df728edfb6a {"aliquot_tag": "ALQ_6b4e10b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.genomic.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.genomic.gdc_realn.bam 10466619322 BAM genomic harmonized CPTAC3 2b88edaf-1573-4db7-853c-f252f99dc340 3a99d43d85b83bd55fb785797763afd1 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.RNA-Seq.genomic.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.genomic.gdc_realn.bam 6019043954 BAM genomic harmonized CPTAC3 af70ae99-c234-4ed3-a914-e7bcd908457d 5ef919f48c586c4284eac6e26ea8f29a {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.genomic.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.genomic.gdc_realn.bam 13455538795 BAM genomic harmonized CPTAC3 a93e1421-41fa-432f-a74a-c0ce9ac46c23 1b79c33b60d4e33860ae56fc3185a9a8 {"aliquot_tag": "ALQ_6b4e10b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.S13_L006_R1.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R1_001.fastq.gz 2863764169 FASTQ S13_L006_R1 submitted_unaligned CPTAC3 c245d3cc-c13b-4994-b900-6245c3e884be 2fc9cc8335b762d15410b50b13929aeb {"aliquot_tag": "ALQ_64efaa3", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.S13_L006_R2.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R2_001.fastq.gz 3033744251 FASTQ S13_L006_R2 submitted_unaligned CPTAC3 92811538-48b6-40b2-b1ba-2a103a3df2ce 1a35feabe8c2a8bafd3a5ec691ba3a31 {"aliquot_tag": "ALQ_64efaa3", "sample": "S13", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.S22_L004_R1.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R1_001.fastq.gz 3381706751 FASTQ S22_L004_R1 submitted_unaligned CPTAC3 4a048fad-1dbb-459b-a65a-fc8ee83ab8e6 75842975ea7b232240639150eca17540 {"aliquot_tag": "ALQ_4c29e385", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.RNA-Seq.S22_L004_R2.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R2_001.fastq.gz 3624735725 FASTQ S22_L004_R2 submitted_unaligned CPTAC3 f18369ea-04a4-40be-9170-fda75c86bf23 57cac5526792bf55f1aed88dab6b4195 {"aliquot_tag": "ALQ_4c29e385", "sample": "S22", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.RNA-Seq.S62_R1.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R1_001.fastq.gz 8382418397 FASTQ S62_R1 submitted_unaligned CPTAC3 707bfb28-545e-4216-b52a-d0d46a339a48 9fd29cba26dcc7dbcf0243c1687ab3fa {"aliquot_tag": "ALQ_6b4e10b0", "sample": "S62", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.S62_R2.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R2_001.fastq.gz 8646625499 FASTQ S62_R2 submitted_unaligned CPTAC3 753c36a3-366e-495f-82c6-c08d38947b86 5b854d95d85e07b08972c5875ddd2e22 {"aliquot_tag": "ALQ_6b4e10b0", "sample": "S62", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.transcriptome.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.transcriptome.gdc_realn.bam 12347170732 BAM transcriptome harmonized CPTAC3 4da12269-3f3d-4061-b7d5-786c27f32161 8fcbe90a4b7b79661a311defdb256231 {"aliquot_tag": "ALQ_4c29e385", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.RNA-Seq.transcriptome.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.transcriptome.gdc_realn.bam 9166232245 BAM transcriptome harmonized CPTAC3 a53ceb32-2c67-4c2c-a854-c4f5050f9dc0 1f0c5bd3ba1d7eb0908c8caf5025f937 {"aliquot_tag": "ALQ_64efaa3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.RNA-Seq.transcriptome.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.transcriptome.gdc_realn.bam 8766445937 BAM transcriptome harmonized CPTAC3 fba31566-ad62-4241-b287-860adeee7ec8 9164202b970ec371dea87ebf67d2046f {"aliquot_tag": "ALQ_6b4e10b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.WGS.N C3L-00977 HNSCC WGS blood_normal CPT0167150002 CPT0167150002.WholeGenome.RP-1303.bam 60919079201 BAM submitted_aligned CPTAC3 1cf1c5ec-8888-474a-ab1f-08733b376fd3 a440e488ebfadf32770d809ff7ecb27a {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00977.WGS.N.hg38 C3L-00977 HNSCC WGS blood_normal CPT0167150002 2339475d-cf4f-45bb-adba-cadfb3acca30_wgs_gdc_realn.bam 89539320285 BAM harmonized CPTAC3 dd3fd04d-7f8b-4a9b-a5b6-441eec97d3cb 5cfdcffe609e91997388d1b11ea4d9c4 {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00977.WGS.T C3L-00977 HNSCC WGS tumor CPT0169640006 CPT0169640006.WholeGenome.RP-1303.bam 62239156267 BAM submitted_aligned CPTAC3 1d634f27-00ac-4bec-b1fa-1ea4eabb3829 339457a58bf1bf53b58e1fad16d3e2db {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.WGS.T.hg38 C3L-00977 HNSCC WGS tumor CPT0169640006 c123a154-adec-48b6-923a-9bc5a29d1601_wgs_gdc_realn.bam 92106610656 BAM harmonized CPTAC3 c1a3dd1b-9b37-45fd-a089-b7d05864986e 394388cb6ecaa6f141771785c5732dcb {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.WXS.A C3L-00977 HNSCC WXS tissue_normal CPT0169650006 CPT0169650006.WholeExome.RP-1303.bam 25810255751 BAM submitted_aligned CPTAC3 7e78c2d2-0d1a-482b-bfc8-1145360258d1 3efcba4c8b80da1e5f6d5dbbe3be6a7a {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.WXS.A.hg38 C3L-00977 HNSCC WXS tissue_normal CPT0169650006 55028363-67ad-4c70-91bc-4a69a46cd152_wxs_gdc_realn.bam 35856807669 BAM harmonized CPTAC3 bf4c2a9d-1b3c-48ca-8103-59249a83c40f 16c983007ea085c9e8c0fd56c6e4cf76 {"aliquot_tag": "ALQ_ab91ce82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00977.WXS.N C3L-00977 HNSCC WXS blood_normal CPT0167150002 CPT0167150002.WholeExome.RP-1303.bam 21100378877 BAM submitted_aligned CPTAC3 5b82e2d1-19f6-4f13-b61d-aa3e1aa2440b 23ee256119a90f19b1ebb2dfea0509f7 {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00977.WXS.N.hg38 C3L-00977 HNSCC WXS blood_normal CPT0167150002 2339475d-cf4f-45bb-adba-cadfb3acca30_wxs_gdc_realn.bam 28786992198 BAM harmonized CPTAC3 e3e06dc2-dc61-4a68-89f2-aa6dc6f5cdb6 6695475e5af082bee06ee0cdc11fc3e4 {"aliquot_tag": "ALQ_e1c6417e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00977.WXS.T C3L-00977 HNSCC WXS tumor CPT0169640006 CPT0169640006.WholeExome.RP-1303.bam 39044315096 BAM submitted_aligned CPTAC3 a3fbc7c5-f81e-405f-b83c-f2dafb93bec2 09949143b9099368e46f59ce0f51e313 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00977.WXS.T.hg38 C3L-00977 HNSCC WXS tumor CPT0169640006 c123a154-adec-48b6-923a-9bc5a29d1601_wxs_gdc_realn.bam 54065141888 BAM harmonized CPTAC3 38dfabd0-45ce-4434-80af-0d625e9a0cba 23e5d484d4aa3923d3bc19ae9e479f58 {"aliquot_tag": "ALQ_96f1e732", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.MethArray.Green.A C3L-00980 CCRCC Methylation_Array tissue_normal CPT0122670006 204930640051_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 445e9271-141e-4a87-990c-78dd42c67360 3ba8182f1c62f5c0c0554196d72f7482 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.MethArray.Green.T C3L-00980 CCRCC Methylation_Array tumor CPT0122660009 203219640133_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6a3be711-98ea-4055-94fa-8d63474fc886 d528ac0aac7631dfc7bb5404f7c08ae2 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.MethArray.Red.A C3L-00980 CCRCC Methylation_Array tissue_normal CPT0122670006 204930640051_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 19d47e14-fc58-4087-8f5f-05e2e8f15a2f c36ffe7076e055ff4702f6adc71d3756 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.MethArray.Red.T C3L-00980 CCRCC Methylation_Array tumor CPT0122660009 203219640133_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 2de39c93-4698-446e-8c75-c90d6a7ff086 bd73d6bfdcd7320ce29bba0e61b4c6a0 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.miRNA-Seq.A.hg38 C3L-00980 CCRCC miRNA-Seq tissue_normal CPT0122670009 168108b3-17e7-46e2-96fe-faa6052a6b5a_mirnaseq_gdc_realn.bam 187386491 BAM harmonized CPTAC3 04276a67-a665-44eb-8112-f14bbe3eb473 3d756345090a27685bc82ae229c0fa42 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.miRNA-Seq.S21_L002_R1.A C3L-00980 CCRCC miRNA-Seq tissue_normal CPT0122670009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L002_R1_001.unaln.bam 172064311 BAM S21_L002_R1 submitted_unaligned CPTAC3 55072446-3d54-451b-9020-bfd96756a8aa ac666873551f74e812eecb1129337914 {"aliquot_tag": "ALQ_c7a3da73", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.miRNA-Seq.S34_L003_R1.T C3L-00980 CCRCC miRNA-Seq tumor CPT0122660006 190108_UNC31-K00269_0176_AHYGLVBBXX_CATGGC_S34_L003_R1_001.unaln.bam 211465288 BAM S34_L003_R1 submitted_unaligned CPTAC3 8dbb5ff8-eacb-47b7-af44-11b945762777 63f8afe0ed09a8d0c15cc729755deda0 {"aliquot_tag": "ALQ_6a7cee52", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.miRNA-Seq.T.hg38 C3L-00980 CCRCC miRNA-Seq tumor CPT0122660006 2218d3e1-0267-4650-828b-ee8a9ac8689a_mirnaseq_gdc_realn.bam 230926310 BAM harmonized CPTAC3 fd90a5e7-f84f-483c-9caf-cff8dd9fc305 88338f854dbc15bfadfe0b7ccd028a95 {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.RNA-Seq.chimeric.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.chimeric.gdc_realn.bam 124217789 BAM chimeric harmonized CPTAC3 993c8779-425b-4d08-b211-daaeb4222c3d bff97abaf327d2c116ce8c6e6684aef8 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.RNA-Seq.chimeric.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.chimeric.gdc_realn.bam 34489858 BAM chimeric harmonized CPTAC3 f639bbd5-6d6a-4117-ae39-7b4e3ad31fbd 94c11bf5e1f40471d12c1d8a4d9aeef9 {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.RNA-Seq.genomic.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.genomic.gdc_realn.bam 9607400096 BAM genomic harmonized CPTAC3 4f007e54-9d2d-4832-a12d-431ab805e66e 261347685580831cb79f3158b774f783 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.RNA-Seq.genomic.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.genomic.gdc_realn.bam 9173298602 BAM genomic harmonized CPTAC3 c000f5f5-e01f-403e-8b5d-2f001a24554b e39717bbc0f9fce4f22e6ff4fc971e3a {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.RNA-Seq.S21_L008_R1.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R1_001.fastq.gz 3897154563 FASTQ S21_L008_R1 submitted_unaligned CPTAC3 5cd302e9-3738-470e-b604-9c8f04952960 1e156989623a03f2ebc49943661345d9 {"aliquot_tag": "ALQ_c7a3da73", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.RNA-Seq.S21_L008_R2.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R2_001.fastq.gz 4383426143 FASTQ S21_L008_R2 submitted_unaligned CPTAC3 7cd4aeb6-87df-4a6a-9b5f-b10da78930a6 df32756f263dce4065b606dc8ff55ad3 {"aliquot_tag": "ALQ_c7a3da73", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.RNA-Seq.S6_L002_R1.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4220398038 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 dad5c72a-177a-41be-a022-08ae25920b5b e632fd8ccfb615781b0f320d1837ad6a {"aliquot_tag": "ALQ_6a7cee52", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.RNA-Seq.S6_L002_R2.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4591618438 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 b3f276fe-dc9f-4064-b313-a2699d1556dd d02225402b05a2508b62bd5864a8e04f {"aliquot_tag": "ALQ_6a7cee52", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.RNA-Seq.transcriptome.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.transcriptome.gdc_realn.bam 9532588099 BAM transcriptome harmonized CPTAC3 9c5e868c-c22b-47c9-8e63-2a1a798971ab 336e762a5dc1ac9c9dd6417f72312037 {"aliquot_tag": "ALQ_c7a3da73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.RNA-Seq.transcriptome.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.transcriptome.gdc_realn.bam 11562950211 BAM transcriptome harmonized CPTAC3 3715a0b7-0a45-4659-9141-121f2a8d66b7 56af81cd3cee38ea3d3cbdb388f5c417 {"aliquot_tag": "ALQ_6a7cee52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.WGS.A C3L-00980 CCRCC WGS tissue_normal CPT0122670006 CPT0122670006.WholeGenome.RP-1303.bam 51481052168 BAM submitted_aligned CPTAC3 296c4494-34b0-4733-8a7a-d74897aa8664 7ae17b00df51ff4c514646efc91ac33a {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.WGS.A.hg38 C3L-00980 CCRCC WGS tissue_normal CPT0122670006 7e05bf2c-1413-4148-abaa-7ead4aaa8419_wgs_gdc_realn.bam 74893150523 BAM harmonized CPTAC3 4e21269a-e2bc-48c5-8cb6-25af9a7872f5 1f6876fa892cdba474f83c6024f10b20 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.WGS.N C3L-00980 CCRCC WGS blood_normal CPT0124660002 CPT0124660002.WholeGenome.RP-1303.bam 53540831918 BAM submitted_aligned CPTAC3 a57d308e-c71c-4856-9d5b-656f26b4c609 10aef80848efd1f9ad61f9918d8e7de3 {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00980.WGS.N.hg38 C3L-00980 CCRCC WGS blood_normal CPT0124660002 3590cb67-b85f-433b-858b-b0a6a1e22251_wgs_gdc_realn.bam 78218121829 BAM harmonized CPTAC3 5b252611-9dc9-409b-98e1-4da69f0b52a9 0a1b4e97634a471ddb0e402e7c2ce3b6 {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00980.WGS.T C3L-00980 CCRCC WGS tumor CPT0122660009 CPT0122660009.WholeGenome.RP-1303.bam 58442128486 BAM submitted_aligned CPTAC3 2940aad4-9780-4036-bfd8-363c9fc2dfac 123ee8b02530dc180d642301579bad64 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.WGS.T.hg38 C3L-00980 CCRCC WGS tumor CPT0122660009 f0b90e6a-aa5b-4137-afab-034bcc3e5eca_wgs_gdc_realn.bam 86146951967 BAM harmonized CPTAC3 116201d6-d812-4eed-a6ee-31c55a8fc6a0 3c338f7f7b6a0bbf8bd564177905a809 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.WXS.A C3L-00980 CCRCC WXS tissue_normal CPT0122670006 CPT0122670006.WholeExome.RP-1303.bam 20004085076 BAM submitted_aligned CPTAC3 03478a71-89d3-4ff7-ab9a-3fa0adab3e37 f1f0a5a33d3328b4c0f9e5d85f1bea24 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.WXS.A.hg38 C3L-00980 CCRCC WXS tissue_normal CPT0122670006 7e05bf2c-1413-4148-abaa-7ead4aaa8419_wxs_gdc_realn.bam 27771555892 BAM harmonized CPTAC3 5812edfe-38be-43ae-b557-084abfa365c2 8dcfb6b16fd543a206f1e7ad063605e2 {"aliquot_tag": "ALQ_571cc7e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00980.WXS.N C3L-00980 CCRCC WXS blood_normal CPT0124660002 CPT0124660002.WholeExome.RP-1303.bam 30002017759 BAM submitted_aligned CPTAC3 7f99545d-99f9-4c7d-9003-e47fa3a77900 6cd4f17eedc0e0dc1a3d5d54a585e2cb {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00980.WXS.N.hg38 C3L-00980 CCRCC WXS blood_normal CPT0124660002 3590cb67-b85f-433b-858b-b0a6a1e22251_wxs_gdc_realn.bam 41502307993 BAM harmonized CPTAC3 5852753a-c7e1-4445-ae1e-6962f4dc97c3 6a4f71e61cebdf6e700042b776993691 {"aliquot_tag": "ALQ_ec11f71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00980.WXS.T C3L-00980 CCRCC WXS tumor CPT0122660009 CPT0122660009.WholeExome.RP-1303.bam 19353671717 BAM submitted_aligned CPTAC3 8ba60fd4-577e-433e-8939-98f863b25be7 6489dea2756df5169b75104f3be3ed82 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00980.WXS.T.hg38 C3L-00980 CCRCC WXS tumor CPT0122660009 f0b90e6a-aa5b-4137-afab-034bcc3e5eca_wxs_gdc_realn.bam 26436910114 BAM harmonized CPTAC3 0a44ba6a-01e5-447d-b59e-bc3bc45f401a 3a709fd164dd044072c3700a226bf853 {"aliquot_tag": "ALQ_fac3f3c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.MethArray.Green.A C3L-00981 CCRCC Methylation_Array tissue_normal CPT0122730005 204930640065_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6e53f809-06da-4b54-869c-f0a340ca4c60 ada8ed392456d26c18c75e1064463308 {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.MethArray.Green.T C3L-00981 CCRCC Methylation_Array tumor CPT0122720009 203219670054_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c66ab6a0-dc55-47f5-95c0-dad2ac3446d9 3fbbd034e8a1500a4d40d37bc211056d {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.MethArray.Red.A C3L-00981 CCRCC Methylation_Array tissue_normal CPT0122730005 204930640065_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 607535fc-8bf5-4e4a-bfce-21f9bd66dec0 8358880f93925d8a9da6125e7915bfda {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.MethArray.Red.T C3L-00981 CCRCC Methylation_Array tumor CPT0122720009 203219670054_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 0a8cd70e-511e-4929-a50b-8da0d0dc9a81 1c7b0d381e7107f9cdb6fc034d3c065e {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.miRNA-Seq.A.hg38 C3L-00981 CCRCC miRNA-Seq tissue_normal CPT0122730008 c659aa75-e18f-4eba-9cb7-e3cdf58ed5cc_mirnaseq_gdc_realn.bam 250763845 BAM harmonized CPTAC3 2a8637b8-54f4-4f3b-8879-414b901a77f5 bd67f39f06e9080dbd21382faf414330 {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.miRNA-Seq.S25_L002_R1.A C3L-00981 CCRCC miRNA-Seq tissue_normal CPT0122730008 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L002_R1_001.unaln.bam 232340616 BAM S25_L002_R1 submitted_unaligned CPTAC3 8068d046-a6b2-40f0-89a9-1a8abe382417 f5c7dbe66c3ca45318f7431e9b52f3f3 {"aliquot_tag": "ALQ_8e789f80", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.miRNA-Seq.S35_L003_R1.T C3L-00981 CCRCC miRNA-Seq tumor CPT0122720006 190108_UNC31-K00269_0176_AHYGLVBBXX_CATTTT_S35_L003_R1_001.unaln.bam 209078400 BAM S35_L003_R1 submitted_unaligned CPTAC3 bc622217-25aa-48f4-9829-90d68614aaf3 07ef6213ab4744457ec996116861c2cd {"aliquot_tag": "ALQ_54a09b37", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.miRNA-Seq.T.hg38 C3L-00981 CCRCC miRNA-Seq tumor CPT0122720006 63cfaa5b-9db2-4be6-a21e-ce71341cddba_mirnaseq_gdc_realn.bam 222858407 BAM harmonized CPTAC3 52cda274-970f-4ba7-ae48-0652eebb0c3d e9bec1da6cb5425f53077128a211c3eb {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.RNA-Seq.chimeric.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.chimeric.gdc_realn.bam 132781401 BAM chimeric harmonized CPTAC3 f99aebe3-7921-4cde-8171-1cec61c289d6 0c22b9a6b5866f087566f75ef048fcf9 {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.RNA-Seq.chimeric.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.chimeric.gdc_realn.bam 30424804 BAM chimeric harmonized CPTAC3 8e0c5af0-5f11-4b81-9d97-9d4184577fe6 c04dc3dd003530d6a9c987b820216144 {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.RNA-Seq.genomic.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.genomic.gdc_realn.bam 11428268122 BAM genomic harmonized CPTAC3 bca92fed-dd71-4183-b37c-62a1251de672 1d34abe35fd22a401017021a0650038a {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.RNA-Seq.genomic.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.genomic.gdc_realn.bam 9589469035 BAM genomic harmonized CPTAC3 e51cbe25-6da2-43f6-900f-be082a7ed2aa 1b499051e039a3ac0c1528154080fcf2 {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.RNA-Seq.S22_L008_R1.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R1_001.fastq.gz 4007834300 FASTQ S22_L008_R1 submitted_unaligned CPTAC3 f8d14556-7d50-49c6-9374-0703df20e889 01fd6a70ddac8cc82b756f52c5281534 {"aliquot_tag": "ALQ_8e789f80", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.RNA-Seq.S22_L008_R2.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R2_001.fastq.gz 4416298272 FASTQ S22_L008_R2 submitted_unaligned CPTAC3 414fcc44-18a7-422e-a5a9-23dd315d3684 38e0d7b7214892f04b69f6fed3bb3245 {"aliquot_tag": "ALQ_8e789f80", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.RNA-Seq.S8_L002_R1.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4291633654 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 6327b471-3bc6-40e4-bc9a-616f9ab3961c 621b6c236bfc44a55969ddfe0308719d {"aliquot_tag": "ALQ_54a09b37", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.RNA-Seq.S8_L002_R2.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4809071727 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 7b19eb0c-2d5c-4580-9073-3d5a69e74b4c 57006cfa7a2dbf91cadc5640bd8e139a {"aliquot_tag": "ALQ_54a09b37", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.RNA-Seq.transcriptome.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.transcriptome.gdc_realn.bam 8473834516 BAM transcriptome harmonized CPTAC3 e90a37d0-1118-4359-9c18-87e218bda402 801dea9fc6527a6e885a5b7d13792782 {"aliquot_tag": "ALQ_8e789f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.RNA-Seq.transcriptome.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.transcriptome.gdc_realn.bam 10668031609 BAM transcriptome harmonized CPTAC3 1fcf84f0-6e32-4189-97bd-824eb0c2b233 735926986f91d3496669542609b8ff30 {"aliquot_tag": "ALQ_54a09b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.WGS.A C3L-00981 CCRCC WGS tissue_normal CPT0122730005 CPT0122730005.WholeGenome.RP-1303.bam 55047052121 BAM submitted_aligned CPTAC3 e7dd30ef-612e-45da-acea-917eab9a6588 48420a272a3a8b3e189438b97e605e9a {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.WGS.A.hg38 C3L-00981 CCRCC WGS tissue_normal CPT0122730005 2c0c4eae-a2e7-4de1-a18c-3445e2dac4e1_wgs_gdc_realn.bam 80053245255 BAM harmonized CPTAC3 56701e56-f395-4dec-8f12-b88421351250 0f1ab15eb55561ff0fcd6bcf31799840 {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.WGS.N C3L-00981 CCRCC WGS blood_normal CPT0124680002 CPT0124680002.WholeGenome.RP-1303.bam 52665215353 BAM submitted_aligned CPTAC3 9ad4daa3-ea60-48d2-a7f6-cddfe59d94bc aa5f84108a479941f4c9007f670d380f {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00981.WGS.N.hg38 C3L-00981 CCRCC WGS blood_normal CPT0124680002 b1629af4-40df-4bc4-baf0-409e073d886f_wgs_gdc_realn.bam 76855046584 BAM harmonized CPTAC3 19007927-e844-41e8-b689-0962e6f9c171 1624d450bf52482658daf389dda6aa4c {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00981.WGS.T C3L-00981 CCRCC WGS tumor CPT0122720009 CPT0122720009.WholeGenome.RP-1303.bam 57378867729 BAM submitted_aligned CPTAC3 c7ddf096-468f-433e-9b37-7e24790fdaec ffa69a7a498f55c9dc9f195e02bac4cf {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.WGS.T.hg38 C3L-00981 CCRCC WGS tumor CPT0122720009 3f9b2567-37c5-40aa-b04f-8e2e9057292f_wgs_gdc_realn.bam 83575801850 BAM harmonized CPTAC3 62afb454-c7f5-4ef9-b06f-762c8522301a 4eb3c9a636d38a1e30c7cd083404e53c {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.WXS.A C3L-00981 CCRCC WXS tissue_normal CPT0122730005 CPT0122730005.WholeExome.RP-1303.bam 25514825241 BAM submitted_aligned CPTAC3 e1397312-1454-4af0-a433-1756c3bcbb74 58eb23ea0a0253bbc576614263986a46 {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.WXS.A.hg38 C3L-00981 CCRCC WXS tissue_normal CPT0122730005 2c0c4eae-a2e7-4de1-a18c-3445e2dac4e1_wxs_gdc_realn.bam 35154719239 BAM harmonized CPTAC3 1d6f39fa-4d43-41c1-a60a-908d00af64f1 c800a435cd415bd243ab4f6d360beeae {"aliquot_tag": "ALQ_f0c9e33d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00981.WXS.N C3L-00981 CCRCC WXS blood_normal CPT0124680002 CPT0124680002.WholeExome.RP-1303.bam 26818367322 BAM submitted_aligned CPTAC3 d4688a68-9418-4063-9027-7c7c2860af51 8f8b1fa56566fe480319758494f568d9 {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00981.WXS.N.hg38 C3L-00981 CCRCC WXS blood_normal CPT0124680002 b1629af4-40df-4bc4-baf0-409e073d886f_wxs_gdc_realn.bam 36963053347 BAM harmonized CPTAC3 dc4a66ef-32ec-42a5-b889-9392e80f7aea 3cd3bda456949a4332548b4a2456f617 {"aliquot_tag": "ALQ_b1f1a110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00981.WXS.T C3L-00981 CCRCC WXS tumor CPT0122720009 CPT0122720009.WholeExome.RP-1303.bam 40348258261 BAM submitted_aligned CPTAC3 e9f236e1-c4a7-4c35-a321-0c7d2796c33e 953825c08d6e635f5abab9e2ca6b2b67 {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00981.WXS.T.hg38 C3L-00981 CCRCC WXS tumor CPT0122720009 3f9b2567-37c5-40aa-b04f-8e2e9057292f_wxs_gdc_realn.bam 56661316031 BAM harmonized CPTAC3 152873b4-a322-402c-8cb1-07d1d2f8d034 65a96e18c893504e8090765860fa607d {"aliquot_tag": "ALQ_c41f86a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.MethArray.Green.A C3L-00982 CCRCC Methylation_Array tissue_normal CPT0126920006 204373100047_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 775aca0c-977f-4d1e-99e9-01187017be3b 59f69ba3789e4815647da284033401e3 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.MethArray.Green.T C3L-00982 CCRCC Methylation_Array tumor CPT0124160006 203219650005_R04C01_Grn.idat 13676225 IDAT Green NA CPTAC3 65dc8be5-c0af-4742-b1d6-08bafa470332 7858a575a1ef7967fb295bdb0cb1a8a1 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.MethArray.Red.A C3L-00982 CCRCC Methylation_Array tissue_normal CPT0126920006 204373100047_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 0bd50225-c999-4d98-9572-c24b07889665 6cb40a2f801a1991840b82d57b25f84f {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.MethArray.Red.T C3L-00982 CCRCC Methylation_Array tumor CPT0124160006 203219650005_R04C01_Red.idat 13676225 IDAT Red NA CPTAC3 cd5520ca-c5d2-4d81-9ea1-eef0b5be8c03 4042199cdb100c4ede66685d57638d17 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.miRNA-Seq.A.hg38 C3L-00982 CCRCC miRNA-Seq tissue_normal CPT0126920009 68fe19aa-9f42-458e-b414-560ee02dfe4b_mirnaseq_gdc_realn.bam 191881013 BAM harmonized CPTAC3 6ea1add4-5023-4c72-86e9-b47209878868 49da40aaa653c11d6a19e32df721b965 {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.miRNA-Seq.S14_L004_R1.T C3L-00982 CCRCC miRNA-Seq tumor CPT0124160009 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTTCC_S14_L004_R1_001.unaln.bam 266325487 BAM S14_L004_R1 submitted_unaligned CPTAC3 b8f6b883-26e0-4869-b58d-f4204e5fb9e3 8faddb2e101a2a9080ed58c05a51924d {"aliquot_tag": "ALQ_8416f641", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.miRNA-Seq.S29_L003_R1.A C3L-00982 CCRCC miRNA-Seq tissue_normal CPT0126920009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L003_R1_001.unaln.bam 174408096 BAM S29_L003_R1 submitted_unaligned CPTAC3 63685cdb-8f84-4caf-9c2d-fe1c58e12be6 ebc6d4e2255721be860106c6de878a6c {"aliquot_tag": "ALQ_a5ac3c5", "sample": "S29", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.miRNA-Seq.T.hg38 C3L-00982 CCRCC miRNA-Seq tumor CPT0124160009 589f51f3-65d8-4a7e-8e2d-4c66174293cb_mirnaseq_gdc_realn.bam 289429534 BAM harmonized CPTAC3 a55a1b90-dcf9-4f53-84a3-562380a22aa3 1e94ea4e56d8c070b05ee33f610fe962 {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.RNA-Seq.chimeric.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.chimeric.gdc_realn.bam 130625464 BAM chimeric harmonized CPTAC3 1d0180a3-55b2-4048-9651-733aaabdeed1 0d0107d437cae9d8cbbe7acdb39aa76d {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.RNA-Seq.chimeric.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.chimeric.gdc_realn.bam 46879905 BAM chimeric harmonized CPTAC3 404b41ef-217d-4782-aa5f-efa76c7623bb 101da4dacd67fcfdb36d7518584b005e {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.RNA-Seq.genomic.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.genomic.gdc_realn.bam 9146962599 BAM genomic harmonized CPTAC3 6b4153d3-2efc-4a51-a9e2-c496fe028eda 28c69de8019d69725f36ea2b1b3f1e9f {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.RNA-Seq.genomic.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.genomic.gdc_realn.bam 10645538607 BAM genomic harmonized CPTAC3 d7061043-5b89-4a80-91d7-de59e806cd67 4c3e81460e530076ed45e9f4dce3bf04 {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.RNA-Seq.S10_L004_R1.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R1_001.fastq.gz 4528048033 FASTQ S10_L004_R1 submitted_unaligned CPTAC3 e10d235c-59e2-4665-91d7-37b2e882385c a6d8553da3a838c4408f5d4d4be6c785 {"aliquot_tag": "ALQ_8416f641", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.RNA-Seq.S10_L004_R2.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R2_001.fastq.gz 4922189461 FASTQ S10_L004_R2 submitted_unaligned CPTAC3 51b9b038-236c-42f8-a09f-4d447dbdf7c3 184ff57769c6ee959a9f5a4f719ba081 {"aliquot_tag": "ALQ_8416f641", "sample": "S10", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.RNA-Seq.S9_L005_R1.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R1_001.fastq.gz 4161300881 FASTQ S9_L005_R1 submitted_unaligned CPTAC3 cc3f49ba-2f48-40ef-ad20-6bed1d96942f c348fb2bb1189d01e5f93bb42e456c2b {"aliquot_tag": "ALQ_a5ac3c5", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.RNA-Seq.S9_L005_R2.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R2_001.fastq.gz 4332346638 FASTQ S9_L005_R2 submitted_unaligned CPTAC3 c22b6562-57d3-4cdb-b4d1-6ae71d4bc48d f567fa5a355a98e801f14cf14816abaa {"aliquot_tag": "ALQ_a5ac3c5", "sample": "S9", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.RNA-Seq.transcriptome.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.transcriptome.gdc_realn.bam 10816873856 BAM transcriptome harmonized CPTAC3 b40d4b25-1554-4f04-9a0e-4993eef39fef 7fd5a4a5dd4b333065aa5ad824d8fd1d {"aliquot_tag": "ALQ_a5ac3c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.RNA-Seq.transcriptome.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.transcriptome.gdc_realn.bam 12281404272 BAM transcriptome harmonized CPTAC3 4cd43330-e55f-4d4e-b1ad-de36eb29e9c4 b5d169f9370ad9c2390fbc024c48e343 {"aliquot_tag": "ALQ_8416f641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.WGS.A C3L-00982 CCRCC WGS tissue_normal CPT0126920006 CPT0126920006.WholeGenome.RP-1303.bam 60546605674 BAM submitted_aligned CPTAC3 ea7bc515-b171-47bd-8790-85f63ded1798 784f95caff10ead628652f02b45e5dd8 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.WGS.A.hg38 C3L-00982 CCRCC WGS tissue_normal CPT0126920006 0340c8df-bdc2-48fe-8415-056a4dc10d4f_wgs_gdc_realn.bam 88845324612 BAM harmonized CPTAC3 d91cb755-8625-4324-9779-408c49da2978 67d7b902409a6c15940da8f6c181befa {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.WGS.N C3L-00982 CCRCC WGS blood_normal CPT0128480002 CPT0128480002.WholeGenome.RP-1303.bam 53329214688 BAM submitted_aligned CPTAC3 c96c3bf2-5a11-424a-90ee-1f70083487dd ca56656c9ae9a446715857a99fedf8a4 {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00982.WGS.N.hg38 C3L-00982 CCRCC WGS blood_normal CPT0128480002 cd93f6a7-0847-467e-8b11-a57e13f24e89_wgs_gdc_realn.bam 76660803578 BAM harmonized CPTAC3 60d362c8-e216-4de2-b2f2-2dcfc9d3bf5a 82e877bdcc2d488597f7a55390e6fc8c {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00982.WGS.T C3L-00982 CCRCC WGS tumor CPT0124160006 CPT0124160006.WholeGenome.RP-1303.bam 54344381877 BAM submitted_aligned CPTAC3 ddf5218f-410b-4753-80d4-c6f82adc1d10 b4832a50a4e65355e4b9ec662b78d3a9 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.WGS.T.hg38 C3L-00982 CCRCC WGS tumor CPT0124160006 978a7840-abc1-46bb-bacc-a094faafd7d4_wgs_gdc_realn.bam 78975085369 BAM harmonized CPTAC3 b613648a-5dc2-4833-bd02-3bf7111ba5bd 98f4b94b00dcaf40b2125be06906f6df {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.WXS.A C3L-00982 CCRCC WXS tissue_normal CPT0126920006 CPT0126920006.WholeExome.RP-1303.bam 26692872449 BAM submitted_aligned CPTAC3 0138797c-368e-432d-acff-fb8abb20a692 cd896ec2439d68472299137c5a663478 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.WXS.A.hg38 C3L-00982 CCRCC WXS tissue_normal CPT0126920006 0340c8df-bdc2-48fe-8415-056a4dc10d4f_wxs_gdc_realn.bam 36856451042 BAM harmonized CPTAC3 58705889-61fe-492d-8e0e-ae36335feb27 ac1170a72ed598a4afbf64ff13a600f1 {"aliquot_tag": "ALQ_9ae5de54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00982.WXS.N C3L-00982 CCRCC WXS blood_normal CPT0128480002 CPT0128480002.WholeExome.RP-1303.bam 26330901421 BAM submitted_aligned CPTAC3 3904d3e9-53aa-4be8-a181-6ff96d8191f4 886e325045ae01ab93e07c928527ca31 {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00982.WXS.N.hg38 C3L-00982 CCRCC WXS blood_normal CPT0128480002 cd93f6a7-0847-467e-8b11-a57e13f24e89_wxs_gdc_realn.bam 36930833440 BAM harmonized CPTAC3 9d65cd34-ee64-40f4-a90e-2bd0c1c4e9cc a5314dfa471f74cc8df1be3cd8dcd3ba {"aliquot_tag": "ALQ_3b996a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00982.WXS.T C3L-00982 CCRCC WXS tumor CPT0124160006 CPT0124160006.WholeExome.RP-1303.bam 26949361644 BAM submitted_aligned CPTAC3 91ef683c-ca7a-4d60-8a7a-8ff51bba87e2 42f67c4732551e62a417961b7724c5b1 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00982.WXS.T.hg38 C3L-00982 CCRCC WXS tumor CPT0124160006 978a7840-abc1-46bb-bacc-a094faafd7d4_wxs_gdc_realn.bam 37474641163 BAM harmonized CPTAC3 4d885d06-e088-438b-a5f1-07562763bc13 30b3decc995a9428c50476e58eb8da71 {"aliquot_tag": "ALQ_14a9ebd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.MethArray.Green.T C3L-00987 HNSCC Methylation_Array tumor CPT0127050006 203219650047_R02C01_Grn.idat 13676207 IDAT Green NA CPTAC3 b0e6f1b9-7bd2-4ae4-941d-bb2ea1b2fecf 4bdc798b5b072a6c95101e0e10f91583 {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.MethArray.Red.T C3L-00987 HNSCC Methylation_Array tumor CPT0127050006 203219650047_R02C01_Red.idat 13676207 IDAT Red NA CPTAC3 cb42655d-731e-4175-b2d8-f392de515b03 08780de191b6ad5c8b4029566241b64c {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.miRNA-Seq.S6_L001_R1.T C3L-00987 HNSCC miRNA-Seq tumor CPT0127050009 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L001_R1_001.unaln.bam 260071189 BAM S6_L001_R1 submitted_unaligned CPTAC3 0fbb8f21-fb34-4299-a384-6e41a0f7e9a7 02a28c02a1c6ac834d13c0b9250da671 {"aliquot_tag": "ALQ_390245a9", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.miRNA-Seq.T.hg38 C3L-00987 HNSCC miRNA-Seq tumor CPT0127050009 62114f12-269e-4bba-9f39-95746b6fd550_mirnaseq_gdc_realn.bam 285804174 BAM harmonized CPTAC3 5b9b8f8b-e58e-4512-a33d-e7d240244506 c53cd941403953324d78513b0bf294fb {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.chimeric.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.chimeric.gdc_realn.bam 296619401 BAM chimeric harmonized CPTAC3 9de51fc5-1ace-4e5c-94d1-3c8d539df983 620591d7fb41589606853671740f1007 {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.chimeric.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.chimeric.gdc_realn.bam 193987319 BAM chimeric harmonized CPTAC3 0fa9b8cd-d024-4e33-b4da-6776ffb77d0a b1f497c5c5a2f5d2328fc1e0fa1b2d46 {"aliquot_tag": "ALQ_e59e2f7f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.genomic.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.genomic.gdc_realn.bam 8697626433 BAM genomic harmonized CPTAC3 eef95d52-f97b-412b-9dc7-ad876edb7f89 52e1f2097d50dcc9927fdd98ccaf1434 {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.genomic.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.genomic.gdc_realn.bam 10427410648 BAM genomic harmonized CPTAC3 7722501e-ecce-4afc-8b78-76bc8144d1a4 c56391a3f67a2564ee36e485c34eb780 {"aliquot_tag": "ALQ_e59e2f7f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.S63_R1.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R1_001.fastq.gz 6763131204 FASTQ S63_R1 submitted_unaligned CPTAC3 0afb49f7-b185-4364-83e8-8dd278265bb6 a171659dbcfbf46ddc8e16ae7b74fc36 {"aliquot_tag": "ALQ_e59e2f7f", "sample": "S63", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.S63_R2.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R2_001.fastq.gz 6946642256 FASTQ S63_R2 submitted_unaligned CPTAC3 7d16f3ea-2079-49c1-9522-e17e6edfc217 0c378ae5299b8caef9e7584e271256c2 {"aliquot_tag": "ALQ_e59e2f7f", "sample": "S63", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.S6_L002_R1.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4130454898 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 20884bd2-15d1-4e47-8c38-797daa6c002b c374929b934ed298dfa09153d089eae2 {"aliquot_tag": "ALQ_390245a9", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.S6_L002_R2.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4567521275 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 85b3c3d8-903d-463d-94bf-0443bae53c57 8fa5abf9bbe7232b146062c981f87afe {"aliquot_tag": "ALQ_390245a9", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.transcriptome.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.transcriptome.gdc_realn.bam 11064885083 BAM transcriptome harmonized CPTAC3 18e0c4c2-f24d-4583-993b-6c52db9e85be 230cd9463db7a43aadb4d7fbc27a60d0 {"aliquot_tag": "ALQ_390245a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.RNA-Seq.transcriptome.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.transcriptome.gdc_realn.bam 6330216976 BAM transcriptome harmonized CPTAC3 896a6653-5e9f-4a74-a7a1-4dbcd3f62522 19e9b59f9fba47a02dd1b371e6b8fe17 {"aliquot_tag": "ALQ_e59e2f7f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.WGS.N C3L-00987 HNSCC WGS blood_normal CPT0128500002 CPT0128500002.WholeGenome.RP-1303.bam 75967541992 BAM submitted_aligned CPTAC3 e46e023c-8f43-4435-94f2-39d8d1fb3a0d 754073ad55667e6c37b3c553374a8778 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00987.WGS.N.hg38 C3L-00987 HNSCC WGS blood_normal CPT0128500002 3dcd0253-ff02-4908-b27c-128e54c93560_wgs_gdc_realn.bam 112696502067 BAM harmonized CPTAC3 8f414a09-7ec3-4247-a058-0ec60a8bad7f db12501c2173ac071d4d8cf5b20fbc52 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00987.WGS.T C3L-00987 HNSCC WGS tumor CPT0127050006 CPT0127050006.WholeGenome.RP-1303.bam 60978252350 BAM submitted_aligned CPTAC3 90f03ea3-b2bd-4053-aab7-48cf5199e3bf afc3f5d9f0bc7d4dedc138a6736c3b04 {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.WGS.T.hg38 C3L-00987 HNSCC WGS tumor CPT0127050006 eb51741c-873e-42b7-98a1-79136ea048eb_wgs_gdc_realn.bam 89844587112 BAM harmonized CPTAC3 8aa4b17f-c0f0-4c56-828a-7226b253d483 2955c6f6a3cc072ead0119691d8bbeb3 {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.WXS.N C3L-00987 HNSCC WXS blood_normal CPT0128500002 CPT0128500002.WholeExome.RP-1303.bam 43059580348 BAM submitted_aligned CPTAC3 215e7a38-371d-4bc7-8d5f-9ebdc9e925e6 cf425b70eeb792da9321ca827d803944 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00987.WXS.N.hg38 C3L-00987 HNSCC WXS blood_normal CPT0128500002 3dcd0253-ff02-4908-b27c-128e54c93560_wxs_gdc_realn.bam 59934678432 BAM harmonized CPTAC3 69927b12-f3d1-44d7-a4fe-4e1105cdac23 68ee17686267d946611526456be307c9 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00987.WXS.T C3L-00987 HNSCC WXS tumor CPT0127050006 CPT0127050006.WholeExome.RP-1303.bam 22898854690 BAM submitted_aligned CPTAC3 a9481942-2d76-49d4-8068-98f2bae38cfa fe4e343a442518a519bcb901b0a8283e {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00987.WXS.T.hg38 C3L-00987 HNSCC WXS tumor CPT0127050006 eb51741c-873e-42b7-98a1-79136ea048eb_wxs_gdc_realn.bam 31616417280 BAM harmonized CPTAC3 f3505d85-c1c5-417f-b519-7be074af6657 e60cbc524e7db36da85fa50ad3c7464f {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.MethArray.Green.A C3L-00991 CCRCC Methylation_Array tissue_normal CPT0123030006 204930640122_R08C01_Grn.idat 13677965 IDAT Green NA CPTAC3 562edd46-4d7e-49fe-9c9b-76db95b72d28 8170d4463d074a7b8e55c2415122c8d0 {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.MethArray.Green.T C3L-00991 CCRCC Methylation_Array tumor CPT0122990009 203219650174_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b20f069a-a02f-4de8-a009-6a81b3192967 9f1bcb9ca2699ce2962c8af2a724d6e7 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.MethArray.Red.A C3L-00991 CCRCC Methylation_Array tissue_normal CPT0123030006 204930640122_R08C01_Red.idat 13677965 IDAT Red NA CPTAC3 3e21cad3-46c4-4e30-b09c-3a914acb7ead 54323a405c5ee78990d81cf72603550d {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.MethArray.Red.T C3L-00991 CCRCC Methylation_Array tumor CPT0122990009 203219650174_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 b2351dea-f061-4642-9db0-ec9dc280e452 0bae70807f1828ba1e606d25d5c9dcb9 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.miRNA-Seq.A.hg38 C3L-00991 CCRCC miRNA-Seq tissue_normal CPT0123030009 ec90ac3c-7a32-4480-8393-b446c32f01ad_mirnaseq_gdc_realn.bam 239198742 BAM harmonized CPTAC3 4d706cfc-b101-4277-a20a-217009768348 f687a956442fc680c12b89407d583282 {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.miRNA-Seq.S26_L002_R1.A C3L-00991 CCRCC miRNA-Seq tissue_normal CPT0123030009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L002_R1_001.unaln.bam 219281923 BAM S26_L002_R1 submitted_unaligned CPTAC3 24edf11e-9854-43a5-9ac8-2e7f313b2198 3ff0d322038eabe15f5d0b16e6b41346 {"aliquot_tag": "ALQ_420d941a", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.miRNA-Seq.S36_L003_R1.T C3L-00991 CCRCC miRNA-Seq tumor CPT0122990006 190108_UNC31-K00269_0176_AHYGLVBBXX_CCAACA_S36_L003_R1_001.unaln.bam 260086874 BAM S36_L003_R1 submitted_unaligned CPTAC3 bc6e200a-529b-40b7-a608-ae912254e0fb fd47694cfec1892bda667783e398a228 {"aliquot_tag": "ALQ_197acb56", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.miRNA-Seq.T.hg38 C3L-00991 CCRCC miRNA-Seq tumor CPT0122990006 d837bccb-3af6-4351-91e1-8762f2a03cff_mirnaseq_gdc_realn.bam 282861768 BAM harmonized CPTAC3 d4e8bcfd-03ca-4bae-a0eb-5ef9b81b505e 4a59736d55bb7f0d51f577094c04f5dc {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.RNA-Seq.chimeric.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.chimeric.gdc_realn.bam 89337729 BAM chimeric harmonized CPTAC3 75389fc1-8934-4fc9-be90-297aa03da8d4 4117b01d19eaa0b654df11eefc0255f7 {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.RNA-Seq.chimeric.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.chimeric.gdc_realn.bam 28854809 BAM chimeric harmonized CPTAC3 39e40bf8-34a6-433b-9c26-a84f683f8eda a94d62d60fcb6c7912be342085544635 {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.RNA-Seq.genomic.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.genomic.gdc_realn.bam 8679998034 BAM genomic harmonized CPTAC3 449daecd-4a76-4af7-adc7-f1e22964de70 f65928e2553ef996dfc3d15a5cec1cd5 {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.RNA-Seq.genomic.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.genomic.gdc_realn.bam 8299406564 BAM genomic harmonized CPTAC3 b269464f-cecf-4825-8d41-18e793d874ab c67004f8243ea1689824981970e187bb {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.RNA-Seq.S23_L008_R1.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R1_001.fastq.gz 3591976132 FASTQ S23_L008_R1 submitted_unaligned CPTAC3 549226f6-346a-4c61-b085-5d74c4622f80 6bca4d32d1ccab451642d1435ec6468f {"aliquot_tag": "ALQ_420d941a", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.RNA-Seq.S23_L008_R2.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R2_001.fastq.gz 3959759959 FASTQ S23_L008_R2 submitted_unaligned CPTAC3 eda73d8e-4803-4257-87c9-184b83c50146 08fee1810eeec07b3227098282726a15 {"aliquot_tag": "ALQ_420d941a", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.RNA-Seq.S7_L002_R1.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 3858780381 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 39d58648-1c5a-4633-8a93-db1ca405a8ad 4f25c17760159304d766cfc6ed26f398 {"aliquot_tag": "ALQ_197acb56", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.RNA-Seq.S7_L002_R2.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 4187342036 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 e67c30fb-f01c-48c7-9e96-9d57d6cd4080 92873608b4c85be3f5f5080ec19efc00 {"aliquot_tag": "ALQ_197acb56", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.RNA-Seq.transcriptome.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.transcriptome.gdc_realn.bam 9708481350 BAM transcriptome harmonized CPTAC3 e47f9176-5fc4-48a6-aaa9-bf9c63ae6729 cc7828a84d1bd9f5e2616e9f8a8ea9cd {"aliquot_tag": "ALQ_420d941a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.RNA-Seq.transcriptome.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.transcriptome.gdc_realn.bam 10886684443 BAM transcriptome harmonized CPTAC3 5c3b50c2-5280-41c4-b938-13c25a4e59b6 0d27ed4281a3d00119a47a6595bd5cec {"aliquot_tag": "ALQ_197acb56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.WGS.A C3L-00991 CCRCC WGS tissue_normal CPT0123030006 CPT0123030006.WholeGenome.RP-1303.bam 55842017460 BAM submitted_aligned CPTAC3 eb3a2ba7-79ea-4def-b470-b46a57286fff 605e297c16f529f82a4e0e5f1371bce0 {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.WGS.A.hg38 C3L-00991 CCRCC WGS tissue_normal CPT0123030006 ec283004-af44-4c9e-a7dd-b612be07284b_wgs_gdc_realn.bam 82372480584 BAM harmonized CPTAC3 cf49c113-1eb3-460c-b6a0-2589250bcb81 7230215b4cbed86168689c162ae74f1d {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.WGS.N C3L-00991 CCRCC WGS blood_normal CPT0124740002 CPT0124740002.WholeGenome.RP-1303.bam 66166571178 BAM submitted_aligned CPTAC3 c09e75ff-f8f9-4255-8456-3a3f0f5cc736 f5e534dd32b101b220ce09b0180e25bd {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00991.WGS.N.hg38 C3L-00991 CCRCC WGS blood_normal CPT0124740002 8dc92f70-9830-4d9d-8e77-288406b2abee_wgs_gdc_realn.bam 94992767464 BAM harmonized CPTAC3 09a1599a-a1ba-4578-8bf9-9cfb1ad63679 bf41f27227bfd759c75efb53834dd86a {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00991.WGS.T C3L-00991 CCRCC WGS tumor CPT0122990009 CPT0122990009.WholeGenome.RP-1303.bam 63736921351 BAM submitted_aligned CPTAC3 47df8a69-641c-4e02-bf18-4acb9d6111e0 dcbfb75a70c651b2c3f4eac82c2d9554 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.WGS.T.hg38 C3L-00991 CCRCC WGS tumor CPT0122990009 bbfd62a1-2f6a-41f0-a8c6-015b6132e2c2_wgs_gdc_realn.bam 93295082003 BAM harmonized CPTAC3 f3cfdb11-a523-4cdb-a060-e18f80a42e0c 1954f723f062d949c08153a08d0f8184 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.WXS.A C3L-00991 CCRCC WXS tissue_normal CPT0123030006 CPT0123030006.WholeExome.RP-1303.bam 19041451147 BAM submitted_aligned CPTAC3 914ce933-d67a-4653-bb22-10ed8abaee12 08d7f055ad75d912f962ddab2e010b7d {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.WXS.A.hg38 C3L-00991 CCRCC WXS tissue_normal CPT0123030006 ec283004-af44-4c9e-a7dd-b612be07284b_wxs_gdc_realn.bam 27275807458 BAM harmonized CPTAC3 b9001265-a3b9-4ce3-b0f1-a39da2142783 112486d25c746d42965cbe7bbe8a8d67 {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00991.WXS.N C3L-00991 CCRCC WXS blood_normal CPT0124740002 CPT0124740002.WholeExome.RP-1303.bam 23668181045 BAM submitted_aligned CPTAC3 db18b725-374e-4a05-a0de-8d642c2d06c2 5fa6136a50e9e50b1718452220987c68 {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00991.WXS.N.hg38 C3L-00991 CCRCC WXS blood_normal CPT0124740002 8dc92f70-9830-4d9d-8e77-288406b2abee_wxs_gdc_realn.bam 32469409236 BAM harmonized CPTAC3 ab6f1c7f-d40f-4d65-9842-9328dff1ed0e 1b70f1abd571befb53a6b67d1dfdbff5 {"aliquot_tag": "ALQ_bf5d9fb4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00991.WXS.T C3L-00991 CCRCC WXS tumor CPT0122990009 CPT0122990009.WholeExome.RP-1303.bam 26588890894 BAM submitted_aligned CPTAC3 ba8b9366-48e3-4b49-ad49-e63c28f9b4a7 2e2b1b8472aa6316608b8b4b4b83724f {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00991.WXS.T.hg38 C3L-00991 CCRCC WXS tumor CPT0122990009 bbfd62a1-2f6a-41f0-a8c6-015b6132e2c2_wxs_gdc_realn.bam 36458132374 BAM harmonized CPTAC3 37800cf7-2080-446f-b4a4-c97fb5987f72 5fd1b7481d53bd1e18b9fe2006528a8e {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.MethArray.Green.A C3L-00993 LSCC Methylation_Array tissue_normal CPT0102840006 203219670180_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5e81c0c2-3b88-44f0-b35e-52b40bd2fc47 8334710c9d8735602427275dbe67934b {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.MethArray.Green.T C3L-00993 LSCC Methylation_Array tumor CPT0102790009 202234370093_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 43e44a0a-7a10-4d53-adde-a6c41ce88ce8 a6ddf3a9f66a711ba16300fdf97cedd5 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.MethArray.Red.A C3L-00993 LSCC Methylation_Array tissue_normal CPT0102840006 203219670180_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 0fab6ab4-f949-47da-9f7a-1cd13f4f3c65 a55de677671485ab7389a4a3f557be4f {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.MethArray.Red.T C3L-00993 LSCC Methylation_Array tumor CPT0102790009 202234370093_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 7b4a0c5a-412a-488c-930b-d625fb7c40d5 a83fa92aac6f96da9f69df6681cfb8a7 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.miRNA-Seq.A.hg38 C3L-00993 LSCC miRNA-Seq tissue_normal CPT0102840009 650c8c92-99e0-4002-97a4-6d287e02493e_mirnaseq_gdc_realn.bam 218940587 BAM harmonized CPTAC3 4464affe-f5c8-429a-a47c-a78fd7a4f87b 1aee49ac0be7ca56081d57125311d33a {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.miRNA-Seq.S33_L002_R1.T C3L-00993 LSCC miRNA-Seq tumor CPT0102790006 181113_UNC31-K00269_0164_AH23NNBBXY_GATCAG_S33_L002_R1_001.unaln.bam 182453994 BAM S33_L002_R1 submitted_unaligned CPTAC3 12945339-8808-4936-b250-276d834653a7 55ee2e91e042776a19e7dcf54c9c5666 {"aliquot_tag": "ALQ_6155ad5b", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.miRNA-Seq.S45_L006_R1.A C3L-00993 LSCC miRNA-Seq tissue_normal CPT0102840009 181113_UNC31-K00269_0164_AH23NNBBXY_GTTTCG_S45_L006_R1_001.unaln.bam 197105625 BAM S45_L006_R1 submitted_unaligned CPTAC3 e107e5b3-108f-4e6e-ae1e-a9b3772aab18 b6bc51e32fca29fcd0cb8ec7c9b2ea42 {"aliquot_tag": "ALQ_f82cc6ae", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.miRNA-Seq.T.hg38 C3L-00993 LSCC miRNA-Seq tumor CPT0102790006 c9bb1cb0-b7d4-4d7e-af14-df2a429ada87_mirnaseq_gdc_realn.bam 202991666 BAM harmonized CPTAC3 4b1aae6a-2c5f-4f68-8bb1-46486625fce2 75424d08bdd82c2049ba64eba230aeb7 {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.RNA-Seq.chimeric.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.chimeric.gdc_realn.bam 35525076 BAM chimeric harmonized CPTAC3 c6d46788-d48c-4607-be4e-67f3dec07f69 b59f0d92c06d8f3e493c7ef2629423fd {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.RNA-Seq.chimeric.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.chimeric.gdc_realn.bam 37687079 BAM chimeric harmonized CPTAC3 7aac7099-fedf-48e4-b686-8eeb8539fa76 87eadd49282b56b10a00ae0679f47b8d {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.RNA-Seq.genomic.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.genomic.gdc_realn.bam 9079085742 BAM genomic harmonized CPTAC3 df3b7c54-052d-4a18-91ff-3365e54bf533 f1023d32324824df1770e111372f4c04 {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.RNA-Seq.genomic.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.genomic.gdc_realn.bam 9204798768 BAM genomic harmonized CPTAC3 2de6a69b-c230-42bd-af91-befe2bfcdfd4 00a28fa922072aadcb0c24e082b51b83 {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.RNA-Seq.S5_L002_R1.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3706316344 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 637b3574-f585-443c-b572-ed4666ea9cd0 5a724cf8f18e1b66e1eddbe07a3cd99b {"aliquot_tag": "ALQ_f82cc6ae", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.RNA-Seq.S5_L002_R2.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4169140451 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 b9971ca9-1778-4bef-8cee-f8bf3ac70d3f 13e9812e6f73a6f1cd1f19ea9b5cb82d {"aliquot_tag": "ALQ_f82cc6ae", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.RNA-Seq.S7_L002_R1.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4197150006 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 e494363c-c751-4544-a3de-9c0312e0c932 b46b822aadd3c3318ae9cdc54f690704 {"aliquot_tag": "ALQ_6155ad5b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.RNA-Seq.S7_L002_R2.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4629977018 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 b0317768-74e0-455b-9a99-694fda26d085 2a6cdee89b7462705c553b3f8f33f8ea {"aliquot_tag": "ALQ_6155ad5b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.RNA-Seq.transcriptome.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.transcriptome.gdc_realn.bam 10480542526 BAM transcriptome harmonized CPTAC3 c0640328-71cb-41b0-95ab-76cc4e8abf0e 909105a1630fac087e88ac51c9e85d77 {"aliquot_tag": "ALQ_f82cc6ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.RNA-Seq.transcriptome.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.transcriptome.gdc_realn.bam 12574905571 BAM transcriptome harmonized CPTAC3 9f811fda-fd08-44d0-89f2-40e808054b86 04d89d7e06388984a2eabccc53812b7d {"aliquot_tag": "ALQ_6155ad5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.WGS.A C3L-00993 LSCC WGS tissue_normal CPT0102840006 CPT0102840006.WholeGenome.RP-1303.bam 61579664372 BAM submitted_aligned CPTAC3 cc337913-ce02-4643-930e-c535498c308f 1b7a3105e362c16d83979f33bfa75652 {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.WGS.A.hg38 C3L-00993 LSCC WGS tissue_normal CPT0102840006 9d07d0b9-db86-441c-996a-990a6389901b_wgs_gdc_realn.bam 89148307376 BAM harmonized CPTAC3 7c6178b4-86dc-4293-9fbd-54a318af355a 2a0a547afa01467d596c23050695c0eb {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.WGS.N C3L-00993 LSCC WGS blood_normal CPT0101090002 CPT0101090002.WholeGenome.RP-1303.bam 59203209015 BAM submitted_aligned CPTAC3 5a7445d6-8aee-4461-aae9-4bfca6dc37e3 af70b7f1303cfead49ba64a4b98d7340 {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00993.WGS.N.hg38 C3L-00993 LSCC WGS blood_normal CPT0101090002 3a95c365-c7ec-44e1-88cf-1a5a9711d928_wgs_gdc_realn.bam 87027263680 BAM harmonized CPTAC3 6d7b2df0-5008-4cef-922e-58fa9be16ba8 a0c6890c034b55bf1ef36bf9b73eec1e {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00993.WGS.T C3L-00993 LSCC WGS tumor CPT0102790009 CPT0102790009.WholeGenome.RP-1303.bam 65098328039 BAM submitted_aligned CPTAC3 6f930eb6-ec95-4b35-b7dd-eb27755ed3dd 9c36cb52561f65714a49cbb801c7a7e1 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.WGS.T.hg38 C3L-00993 LSCC WGS tumor CPT0102790009 a6c3d626-63a7-41ce-9c86-7bb0d30a71b6_wgs_gdc_realn.bam 94828036229 BAM harmonized CPTAC3 552fe02d-6fc3-4253-a4bf-8f3bbf62e6a0 042d5dcb7e9f706175b2f9c71e40d94c {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.WXS.A C3L-00993 LSCC WXS tissue_normal CPT0102840006 CPT0102840006.WholeExome.RP-1303.bam 27217497400 BAM submitted_aligned CPTAC3 ce7e2445-a343-4346-aca1-1e142edcc127 e9c7e60bfd1b65ce8b80be272f58672b {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.WXS.A.hg38 C3L-00993 LSCC WXS tissue_normal CPT0102840006 9d07d0b9-db86-441c-996a-990a6389901b_wxs_gdc_realn.bam 37013582027 BAM harmonized CPTAC3 7421956e-ccc2-4ee4-bc40-d3c66b8037e1 145b74f79fe0ad27aa408c2383faef7e {"aliquot_tag": "ALQ_6893db3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00993.WXS.N C3L-00993 LSCC WXS blood_normal CPT0101090002 CPT0101090002.WholeExome.RP-1303.bam 36366298176 BAM submitted_aligned CPTAC3 45487eba-afb4-4429-bb0b-cac4dd1fbb0b 8960a2aa41de3821539102d1a9e54e9f {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00993.WXS.N.hg38 C3L-00993 LSCC WXS blood_normal CPT0101090002 3a95c365-c7ec-44e1-88cf-1a5a9711d928_wxs_gdc_realn.bam 50723184715 BAM harmonized CPTAC3 d018d51f-b828-424a-ad81-074aa8e5ae61 d91da6075c0f49747b14f592863b10b4 {"aliquot_tag": "ALQ_4ad54367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00993.WXS.T C3L-00993 LSCC WXS tumor CPT0102790009 CPT0102790009.WholeExome.RP-1303.bam 40215943803 BAM submitted_aligned CPTAC3 4dd5f41e-3285-495e-bc0d-4288b88ded3f c1bb766b17e93523f6d9d6709d0586f9 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00993.WXS.T.hg38 C3L-00993 LSCC WXS tumor CPT0102790009 a6c3d626-63a7-41ce-9c86-7bb0d30a71b6_wxs_gdc_realn.bam 54205971202 BAM harmonized CPTAC3 b3f92006-fc40-402c-afb4-1f68b89ed7b8 0f0897430139306e9f4f9af785ca2867 {"aliquot_tag": "ALQ_f1eab0ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.MethArray.Green.A C3L-00994 HNSCC Methylation_Array tissue_normal CPT0169750006 203271750057_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8e77d3f5-0501-4757-8050-83f815634ecf f7563f2359f4e3bbfc2a9d8801fb9b5d {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.MethArray.Green.T C3L-00994 HNSCC Methylation_Array tumor CPT0169730006 203220070165_R01C01_Grn.idat 13676209 IDAT Green NA CPTAC3 62423bee-bdae-4ae7-9b1c-968de44ba7c4 c5273d4f6315308c8536c482ce231151 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.MethArray.Red.A C3L-00994 HNSCC Methylation_Array tissue_normal CPT0169750006 203271750057_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 6a8aaf9e-41cd-4873-88c3-2d3040290cd7 e9334d8b786e509a2f940f433a04bc36 {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.MethArray.Red.T C3L-00994 HNSCC Methylation_Array tumor CPT0169730006 203220070165_R01C01_Red.idat 13676209 IDAT Red NA CPTAC3 ad7a5fc9-36db-4b3c-9d56-17dc34185886 cecb0eefccdad11776c0ec775af1872b {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.miRNA-Seq.A.hg38 C3L-00994 HNSCC miRNA-Seq tissue_normal CPT0169750009 88e2f5ac-2bb3-48ad-b8de-c50211958189_mirnaseq_gdc_realn.bam 276657208 BAM harmonized CPTAC3 58d374d5-0ae8-41c7-83b8-baa2535b1b83 096588e4225e08f38620fdeca8df0f38 {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.miRNA-Seq.S18_L001_R1.A C3L-00994 HNSCC miRNA-Seq tissue_normal CPT0169750009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L001_R1_001.unaln.bam 247125672 BAM S18_L001_R1 submitted_unaligned CPTAC3 70b590f9-5397-4de7-a1df-2936a1df1b0f d91b978df116f0e337cfadc8341d933d {"aliquot_tag": "ALQ_f07200b6", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.miRNA-Seq.S37_L002_R1.T C3L-00994 HNSCC miRNA-Seq tumor CPT0169730009 190228_UNC32-K00270_0151_AHYLY3BBXX_CGGAAT_S37_L002_R1_001.unaln.bam 387002369 BAM S37_L002_R1 submitted_unaligned CPTAC3 e9d96586-db44-4b56-9cc9-a53675c8e4c2 0b53c8c26da8e5d56929d3efc3467b1b {"aliquot_tag": "ALQ_7f32f516", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.miRNA-Seq.T.hg38 C3L-00994 HNSCC miRNA-Seq tumor CPT0169730009 f68e23ce-f8c2-40af-a8f2-0fb851d699dd_mirnaseq_gdc_realn.bam 424262120 BAM harmonized CPTAC3 6d8be5bb-a629-45b0-bd4d-7db45639ed57 32a8a26e4ce8069d9bceecc1a9c229a0 {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.chimeric.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.chimeric.gdc_realn.bam 196006791 BAM chimeric harmonized CPTAC3 084f2b1a-f7fc-4d11-999e-a3a33bfdc27e efbd12db4b77501d374745fd91b6c23c {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.RNA-Seq.chimeric.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.chimeric.gdc_realn.bam 314836841 BAM chimeric harmonized CPTAC3 d7cc85a4-9751-470b-8a02-33b557513b64 c40c5686b27113cc147e0663905a7792 {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.chimeric.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.chimeric.gdc_realn.bam 61614622 BAM chimeric harmonized CPTAC3 748288ad-ef82-4371-880e-66e107afb011 8cea7f6371973515441a224ac317252d {"aliquot_tag": "ALQ_224254c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.genomic.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.genomic.gdc_realn.bam 8505972456 BAM genomic harmonized CPTAC3 a1227660-6d93-4e70-9623-cb73d9aad442 8de9d081898c40702ebfaa803f8aeb59 {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.RNA-Seq.genomic.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.genomic.gdc_realn.bam 6397735944 BAM genomic harmonized CPTAC3 a6c3ede7-97d1-4c46-82e8-79c7ae5b4a81 495368fe9a137f9a65dfbcdc4064be5a {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.genomic.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.genomic.gdc_realn.bam 5915856923 BAM genomic harmonized CPTAC3 ef02eb00-c97b-423e-8113-386e7f25bfac b842cd673dcb7908f49470e3c6abc975 {"aliquot_tag": "ALQ_224254c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.S15_L006_R1.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R1_001.fastq.gz 2961714196 FASTQ S15_L006_R1 submitted_unaligned CPTAC3 e244d40f-dc82-4b79-8b15-3718db683b05 4298da6093d4ee3247849123c9f64ace {"aliquot_tag": "ALQ_7f32f516", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.S15_L006_R2.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R2_001.fastq.gz 3137682375 FASTQ S15_L006_R2 submitted_unaligned CPTAC3 ebb0beb1-26e0-4250-8a86-f82f9caa3ad7 4e2bddd939fd51d48b542f5a587025c3 {"aliquot_tag": "ALQ_7f32f516", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.S16_L004_R1.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R1_001.fastq.gz 4217012607 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 b337afe8-58ea-45c3-8bd5-9ef868ded7ac 335145046fa9ad17e9b884c2907f141e {"aliquot_tag": "ALQ_f07200b6", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.RNA-Seq.S16_L004_R2.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R2_001.fastq.gz 4193730244 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 d24d1924-a1df-48fc-8ab9-746672bce798 090cf8be2c85d5b5d82dff2aeaabe9ca {"aliquot_tag": "ALQ_f07200b6", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.RNA-Seq.S52_R1.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R1_001.fastq.gz 3746814112 FASTQ S52_R1 submitted_unaligned CPTAC3 940b307f-9b3c-4731-9590-a4789bff91c0 6abff3cca169f78d2e52c2816d969826 {"aliquot_tag": "ALQ_224254c4", "sample": "S52", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.S52_R2.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R2_001.fastq.gz 3865482261 FASTQ S52_R2 submitted_unaligned CPTAC3 f0141521-60b6-41fc-ab98-9ec99250a71c 994c91fea2318c0f6f9a5c3db3e8bd56 {"aliquot_tag": "ALQ_224254c4", "sample": "S52", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.transcriptome.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.transcriptome.gdc_realn.bam 11929725435 BAM transcriptome harmonized CPTAC3 c4477800-81c1-4144-858e-2ef31f051ad2 eae99bc93ca5bde4155323df456283e3 {"aliquot_tag": "ALQ_f07200b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.RNA-Seq.transcriptome.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.transcriptome.gdc_realn.bam 8645692363 BAM transcriptome harmonized CPTAC3 6f549774-6abc-469c-b4a5-2f0b99d0ad84 eb8f506b18063ba1a44d2eefc259ead8 {"aliquot_tag": "ALQ_7f32f516", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.RNA-Seq.transcriptome.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.transcriptome.gdc_realn.bam 4029279110 BAM transcriptome harmonized CPTAC3 4aa6ba32-1a8f-4f90-a2cd-28ed5e0760c2 396c00844fba5445ecf3ba42e5c5e18b {"aliquot_tag": "ALQ_224254c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.WGS.N C3L-00994 HNSCC WGS blood_normal CPT0167170002 CPT0167170002.WholeGenome.RP-1303.bam 59024863551 BAM submitted_aligned CPTAC3 d428871e-0688-4547-ac0d-a03ae50c8712 6581cd39092de8a590be4a4de7c9a794 {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00994.WGS.N.hg38 C3L-00994 HNSCC WGS blood_normal CPT0167170002 822985be-35ff-4ffe-a7d7-0a85c7a5fe75_wgs_gdc_realn.bam 85957923457 BAM harmonized CPTAC3 858d63f6-daf4-4edc-a5fc-e9ff916949f9 22b8b2318c8092781a5e65edaad78f98 {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00994.WGS.T C3L-00994 HNSCC WGS tumor CPT0169730006 CPT0169730006.WholeGenome.RP-1303.bam 60918189969 BAM submitted_aligned CPTAC3 118f0c2b-a602-4881-803c-768495bfdd12 07073baf7d6f536f56f0ac8dbf192dff {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.WGS.T.hg38 C3L-00994 HNSCC WGS tumor CPT0169730006 69b38344-d664-4be3-9f4a-c8d3607e70fe_wgs_gdc_realn.bam 88786072849 BAM harmonized CPTAC3 feeb7f38-d1d8-4c52-a882-407ee0b58088 8639b653698f5c333df73c0b32d19353 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.WXS.A C3L-00994 HNSCC WXS tissue_normal CPT0169750006 CPT0169750006.WholeExome.RP-1303.bam 27340081550 BAM submitted_aligned CPTAC3 e9e82ea0-2964-4b83-a9da-e0179bd92dd9 2bf06370c2d227fe8efdfe44ba0ecbdc {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.WXS.A.hg38 C3L-00994 HNSCC WXS tissue_normal CPT0169750006 7ea517d3-dbc3-487e-bb41-27787d8635d1_wxs_gdc_realn.bam 37169542182 BAM harmonized CPTAC3 8e702766-c074-4a33-8954-94c2d414c475 1e216ad80242684bbe440f53db9d9b61 {"aliquot_tag": "ALQ_60cd1d27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00994.WXS.N C3L-00994 HNSCC WXS blood_normal CPT0167170002 CPT0167170002.WholeExome.RP-1303.bam 29610465613 BAM submitted_aligned CPTAC3 9e7c9a54-3a0d-4a34-a7ee-d65faeea0871 76d66c3c6ea558f8de86d6b11af62e4e {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00994.WXS.N.hg38 C3L-00994 HNSCC WXS blood_normal CPT0167170002 822985be-35ff-4ffe-a7d7-0a85c7a5fe75_wxs_gdc_realn.bam 39722638944 BAM harmonized CPTAC3 4a6e487b-6680-482a-a3f2-4cee465cc37b ce3625fc9f5cdec9ac6ddd2218170a01 {"aliquot_tag": "ALQ_9b06121e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00994.WXS.T C3L-00994 HNSCC WXS tumor CPT0169730006 CPT0169730006.WholeExome.RP-1303.bam 18564511393 BAM submitted_aligned CPTAC3 b7120e57-5545-4694-bcd5-271367a7b19e f65d409dca952a327494a96a99af1c01 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00994.WXS.T.hg38 C3L-00994 HNSCC WXS tumor CPT0169730006 69b38344-d664-4be3-9f4a-c8d3607e70fe_wxs_gdc_realn.bam 26145917869 BAM harmonized CPTAC3 4713ef7e-1a03-4d1c-99d4-8133272e5128 98893daa31914dafd0873631df869580 {"aliquot_tag": "ALQ_ef8de887", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.MethArray.Green.A C3L-00995 HNSCC Methylation_Array tissue_normal CPT0169920006 203271740101_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 b0f0dbfe-90bf-418e-b599-733321bccbb2 ccbc59ca31d4b132c53e51eb06a3fef0 {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.MethArray.Green.T C3L-00995 HNSCC Methylation_Array tumor CPT0169890006 203271750047_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 bfd8031b-27ae-4297-b706-e0e3fa77af1f dae233e577c9dbbed9f8fecc325e8337 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.MethArray.Red.A C3L-00995 HNSCC Methylation_Array tissue_normal CPT0169920006 203271740101_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 d03b8f30-4f9e-4cf7-884d-bca0914531e1 bf2126e2f7898da00fc7c898f5174efe {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.MethArray.Red.T C3L-00995 HNSCC Methylation_Array tumor CPT0169890006 203271750047_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 023b72c2-b4f6-4457-b805-3465618b5287 fc6497185010fc94f25e04d2e063fb06 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.miRNA-Seq.A.hg38 C3L-00995 HNSCC miRNA-Seq tissue_normal CPT0169920009 880fcd0d-5a68-4068-8988-9908e4441e48_mirnaseq_gdc_realn.bam 385742960 BAM harmonized CPTAC3 f877d995-5d57-460a-928b-f52d0b7acc81 59d4b5f4162d705baecfb9618e220b3f {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.miRNA-Seq.S19_L001_R1.A C3L-00995 HNSCC miRNA-Seq tissue_normal CPT0169920009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L001_R1_001.unaln.bam 350087292 BAM S19_L001_R1 submitted_unaligned CPTAC3 19a238a0-a19e-415d-b979-a19651a8ce45 ea7b8d5f68b43436a0f33b1a271cd430 {"aliquot_tag": "ALQ_7858bdd6", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.miRNA-Seq.S38_L002_R1.T C3L-00995 HNSCC miRNA-Seq tumor CPT0169890009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTAGCT_S38_L002_R1_001.unaln.bam 180891992 BAM S38_L002_R1 submitted_unaligned CPTAC3 11ed9438-0236-4f97-8b36-1fc053747cb9 959deb25ff655674977af1d3fe6681c1 {"aliquot_tag": "ALQ_c4d45f62", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.miRNA-Seq.T.hg38 C3L-00995 HNSCC miRNA-Seq tumor CPT0169890009 56281c94-e3c5-411f-8b46-bb226dd7c05d_mirnaseq_gdc_realn.bam 199670875 BAM harmonized CPTAC3 8412d8e6-2c54-4f36-a495-8f0cd706507f 0ca0075d0b4adb9d0a5d3fec119b74d1 {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.chimeric.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.chimeric.gdc_realn.bam 221554086 BAM chimeric harmonized CPTAC3 985764a7-2efd-445b-bdec-bd4dacc134e1 4a53d639b5d89ae5805380227682a478 {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.RNA-Seq.chimeric.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.chimeric.gdc_realn.bam 145630119 BAM chimeric harmonized CPTAC3 98f8463b-8fde-4028-9382-ec405c9fddbe ab6988686d62614d10492bbc52be590f {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.chimeric.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.chimeric.gdc_realn.bam 58375583 BAM chimeric harmonized CPTAC3 9cc5a715-8ef5-4172-8fb4-a70a3f00b268 1f61173699ac767036da723a7aa35068 {"aliquot_tag": "ALQ_ddb8d8b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.genomic.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.genomic.gdc_realn.bam 8938218625 BAM genomic harmonized CPTAC3 d3f4c17a-a5a4-4af4-a72e-9ea52bfd58af adb1fc0a3169666aa3b37c0741ee30fa {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.RNA-Seq.genomic.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.genomic.gdc_realn.bam 8285061305 BAM genomic harmonized CPTAC3 4f87e75b-6334-4dfe-81d9-24cc8233b4de 9efb6422ab491d9ca82918f71bd7e345 {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.genomic.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.genomic.gdc_realn.bam 7947243908 BAM genomic harmonized CPTAC3 03d9218c-f24c-4373-a678-d6be47169bb2 fbf8b3c03cf9882106c1eaca5a7e72b0 {"aliquot_tag": "ALQ_ddb8d8b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.S17_L005_R1.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R1_001.fastq.gz 4299287502 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 d0bbae3e-1e20-4d97-9a66-e366b90dff85 fed91d4c7c7d95cd49325845b5b6d160 {"aliquot_tag": "ALQ_7858bdd6", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.RNA-Seq.S17_L005_R2.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R2_001.fastq.gz 4566648611 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 ce96da42-476f-476d-be5a-b92165f58e40 1108b82d873cf489c50328cbb6d16b92 {"aliquot_tag": "ALQ_7858bdd6", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.RNA-Seq.S19_L004_R1.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R1_001.fastq.gz 3727644853 FASTQ S19_L004_R1 submitted_unaligned CPTAC3 90a2979f-da7f-4f3a-a98b-4c7b755dc644 5159361960c03e18a455db775cae9f9f {"aliquot_tag": "ALQ_c4d45f62", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.S19_L004_R2.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R2_001.fastq.gz 4118706214 FASTQ S19_L004_R2 submitted_unaligned CPTAC3 066d4958-eb61-4cdc-bae4-2eb44cf13186 68360d56dea8b89a5bb7e5d70189c3fe {"aliquot_tag": "ALQ_c4d45f62", "sample": "S19", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.S8_R1.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R1_001.fastq.gz 4414270538 FASTQ S8_R1 submitted_unaligned CPTAC3 b155dbb0-3dc1-4731-b673-04c5f8a90f97 8e13dcd2d3907c9b06d30881014e6845 {"aliquot_tag": "ALQ_ddb8d8b5", "sample": "S8", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.S8_R2.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R2_001.fastq.gz 4816856524 FASTQ S8_R2 submitted_unaligned CPTAC3 cf720689-f11f-4d47-9b22-3b7f7026f43d 09f2f9144964118937d030c19ab1924d {"aliquot_tag": "ALQ_ddb8d8b5", "sample": "S8", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.transcriptome.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.transcriptome.gdc_realn.bam 14899315227 BAM transcriptome harmonized CPTAC3 a03df94b-b19d-46d4-b3bc-30ffe32451ae fad134891462c822fd622d5e4fcd656b {"aliquot_tag": "ALQ_7858bdd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.RNA-Seq.transcriptome.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.transcriptome.gdc_realn.bam 9815105765 BAM transcriptome harmonized CPTAC3 f026fb0e-96cc-4471-9da5-9b02454ed580 05af477a65a69011cc247a7b16b6b8c6 {"aliquot_tag": "ALQ_c4d45f62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.RNA-Seq.transcriptome.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.transcriptome.gdc_realn.bam 5071105679 BAM transcriptome harmonized CPTAC3 c7cd18c3-c92b-44d0-85fd-74765cbf1988 03800c7dfeed42e4d0ae8ab62d7819e6 {"aliquot_tag": "ALQ_ddb8d8b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.WGS.N C3L-00995 HNSCC WGS blood_normal CPT0167190002 CPT0167190002.WholeGenome.RP-1303.bam 65106845144 BAM submitted_aligned CPTAC3 d048bced-1b1c-4aa9-b252-ff0569ecba94 b2b6ba5342e6676921eab55ac0f7c3a6 {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00995.WGS.N.hg38 C3L-00995 HNSCC WGS blood_normal CPT0167190002 bc308dfe-70e7-4a18-932d-5364e9fd4277_wgs_gdc_realn.bam 94454936875 BAM harmonized CPTAC3 da1895a5-e4ba-4b9f-ac70-93112be64086 ae2b9f11ca07ac171e90aa26da895a1b {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00995.WGS.T C3L-00995 HNSCC WGS tumor CPT0169890006 CPT0169890006.WholeGenome.RP-1303.bam 67106050453 BAM submitted_aligned CPTAC3 e9a133b1-91d3-4965-a6f1-41acbd891748 762d0c978f28bd31aaccf799888ef8a6 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.WGS.T.hg38 C3L-00995 HNSCC WGS tumor CPT0169890006 d1ac8e9f-e534-48b3-b4cc-5d74769b6ba9_wgs_gdc_realn.bam 99517944673 BAM harmonized CPTAC3 41b2e6d4-1554-41b7-8519-d948242af2fc 4fae4dc1c8499d11cf4f7d999ff19f8f {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.WXS.A C3L-00995 HNSCC WXS tissue_normal CPT0169920006 CPT0169920006.WholeExome.RP-1303.bam 27800050084 BAM submitted_aligned CPTAC3 dc4a3926-666b-45b2-b6b5-610e044131a5 fc0861e3fa0bd99f65adc6e1afa606e2 {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.WXS.A.hg38 C3L-00995 HNSCC WXS tissue_normal CPT0169920006 3a35d3c6-8915-4e92-b506-d23012a9f135_wxs_gdc_realn.bam 38657167753 BAM harmonized CPTAC3 d00b0b3c-d540-4ae0-91ac-6f43d6b7da69 dd46f0438dd832b12935d7379416f01a {"aliquot_tag": "ALQ_e8e7a047", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00995.WXS.N C3L-00995 HNSCC WXS blood_normal CPT0167190002 CPT0167190002.WholeExome.RP-1303.bam 30730050395 BAM submitted_aligned CPTAC3 c8703501-069e-4426-8e0f-f2e3ae2cef13 a52aa4ea6a056612726724f74790ae37 {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00995.WXS.N.hg38 C3L-00995 HNSCC WXS blood_normal CPT0167190002 bc308dfe-70e7-4a18-932d-5364e9fd4277_wxs_gdc_realn.bam 42310137746 BAM harmonized CPTAC3 95593db0-5663-4645-9a44-c18afc0a3369 e780553d4637a64b93dd587123f7552c {"aliquot_tag": "ALQ_2436ac7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00995.WXS.T C3L-00995 HNSCC WXS tumor CPT0169890006 CPT0169890006.WholeExome.RP-1303.bam 46960390971 BAM submitted_aligned CPTAC3 ac86554a-ad12-4426-9eb2-28b651af049d ecf54932122f359c3f7242201064e1c7 {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00995.WXS.T.hg38 C3L-00995 HNSCC WXS tumor CPT0169890006 d1ac8e9f-e534-48b3-b4cc-5d74769b6ba9_wxs_gdc_realn.bam 64715647525 BAM harmonized CPTAC3 c237f1ce-c10b-45db-ac75-63a3eade8b46 e23d951a2b4af541ba6384a5dd4b1e6f {"aliquot_tag": "ALQ_546b42f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.MethArray.Green.A C3L-00997 HNSCC Methylation_Array tissue_normal CPT0123190006 203271740101_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 22b26113-4864-48f2-a271-04d12ed3483c 65d2a239c79dd3f3972807c95644901c {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.MethArray.Green.T C3L-00997 HNSCC Methylation_Array tumor CPT0123180009 203220070102_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 3479ff9b-45e7-402e-8819-6a33e0837ae1 1ec2efbde450ffd091f18e389bbaceb2 {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.MethArray.Red.A C3L-00997 HNSCC Methylation_Array tissue_normal CPT0123190006 203271740101_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 95c65fc7-f810-4531-98d2-5be92df6643a 872ecb1deb63c4e611950144747d925b {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.MethArray.Red.T C3L-00997 HNSCC Methylation_Array tumor CPT0123180009 203220070102_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 1896c6ae-dcbe-43c3-a3cb-5cc83519f9a4 cf884be794e5b0d7ba13533938f32c1f {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.miRNA-Seq.A.hg38 C3L-00997 HNSCC miRNA-Seq tissue_normal CPT0123190009 b7485020-ac57-460c-b918-a4879a6e21d5_mirnaseq_gdc_realn.bam 370745340 BAM harmonized CPTAC3 1090ce1e-a212-4085-a07f-7366de9f7f51 2e44c63fe1a9c20ca0a3db3250a4ba9e {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.miRNA-Seq.S12_L001_R1.A C3L-00997 HNSCC miRNA-Seq tissue_normal CPT0123190009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L001_R1_001.unaln.bam 335507147 BAM S12_L001_R1 submitted_unaligned CPTAC3 04f0eca5-9e37-47c7-8296-51fb0d56069b b4c0ba533f2954b90ae53acd2ef69c01 {"aliquot_tag": "ALQ_c3e15f1e", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.miRNA-Seq.S2_L001_R1.T C3L-00997 HNSCC miRNA-Seq tumor CPT0123180006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L001_R1_001.unaln.bam 250731825 BAM S2_L001_R1 submitted_unaligned CPTAC3 fd309374-f78b-4073-8127-11fb15c724b7 2fa2692a0c929cacf8b9f90a301b4aed {"aliquot_tag": "ALQ_6e3e6b3f", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.miRNA-Seq.T.hg38 C3L-00997 HNSCC miRNA-Seq tumor CPT0123180006 f62af030-f3fc-4074-a870-c4d7a1c2ef6a_mirnaseq_gdc_realn.bam 276759940 BAM harmonized CPTAC3 d5cb05ad-b9c3-44f0-82cd-5089f3ceab03 89dced2df143f9c1af97641724989992 {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.chimeric.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.chimeric.gdc_realn.bam 254757366 BAM chimeric harmonized CPTAC3 5924a67e-f0ac-4df4-b817-540cf45bc77c d1be4743a2fc1a88f55f5521e97c409e {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.RNA-Seq.chimeric.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.chimeric.gdc_realn.bam 194798415 BAM chimeric harmonized CPTAC3 37a380c3-db77-4512-8b1d-d59c291cf806 604be24e40a007f8e1f0defc270b005b {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.chimeric.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.chimeric.gdc_realn.bam 75855906 BAM chimeric harmonized CPTAC3 ecddbc67-110c-4a45-8f9c-efbd627197f0 44701f7d11c93e484fe93f5536749d13 {"aliquot_tag": "ALQ_62c5df02", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.genomic.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.genomic.gdc_realn.bam 7663241469 BAM genomic harmonized CPTAC3 aeb41b7e-9b4a-4a9e-975f-4703a28089dc 7baee70c5b1912682e1377660ff09322 {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.RNA-Seq.genomic.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.genomic.gdc_realn.bam 9992095331 BAM genomic harmonized CPTAC3 8b331167-4527-4b17-a06f-ba09b797d589 aadffbe64ee5a6b8b726fb2e6aa9e809 {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.genomic.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.genomic.gdc_realn.bam 5471374481 BAM genomic harmonized CPTAC3 f19434ac-e240-4efd-8204-5bb10671c2b0 95e48db7c47b6e58401aea7b062e0532 {"aliquot_tag": "ALQ_62c5df02", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.S15_L004_R1.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R1_001.fastq.gz 3484526883 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 f0707248-e2d8-4937-a79c-f20c13e7782c 0df32523c667a511dd7cea49bc6a5d1d {"aliquot_tag": "ALQ_c3e15f1e", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.RNA-Seq.S15_L004_R2.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R2_001.fastq.gz 3807487833 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 6e7b46a9-26db-4a37-be5f-ee0231a4f4a9 cbcf5d8d3df3c31e3871696a638db43f {"aliquot_tag": "ALQ_c3e15f1e", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.RNA-Seq.S26_R1.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R1_001.fastq.gz 3098836931 FASTQ S26_R1 submitted_unaligned CPTAC3 432f3505-e901-4f8e-9b4e-09f93d4394e9 4e5198458ce2eb1ebe477e4c2fb7986d {"aliquot_tag": "ALQ_62c5df02", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.S26_R2.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R2_001.fastq.gz 3235165857 FASTQ S26_R2 submitted_unaligned CPTAC3 44b39e6a-efa0-41d6-887d-0d38e600640b cf806bbe4c51979f880db77b754c334f {"aliquot_tag": "ALQ_62c5df02", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.S2_L001_R1.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R1_001.fastq.gz 4736766213 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 ecf832e9-e81b-4dfa-8ab3-d97644678800 35d7c875ff514764d81bc90813f869fe {"aliquot_tag": "ALQ_6e3e6b3f", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.S2_L001_R2.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R2_001.fastq.gz 5164997370 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 edfdf8c7-5c05-41a7-a9ac-156d17ed29b8 019211054f0e133b73c9d14d922a1764 {"aliquot_tag": "ALQ_6e3e6b3f", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.transcriptome.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.transcriptome.gdc_realn.bam 9856931868 BAM transcriptome harmonized CPTAC3 ea83c9b8-0062-40fc-8b68-193f7c2ced7d e3590e3d87655a0f8e3eda602366e91c {"aliquot_tag": "ALQ_c3e15f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.RNA-Seq.transcriptome.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.transcriptome.gdc_realn.bam 13125928254 BAM transcriptome harmonized CPTAC3 5f893703-b6df-4b34-a3bd-7ac96f394337 c2f8ff78ea2b1f9052a4ace9af50b948 {"aliquot_tag": "ALQ_6e3e6b3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.RNA-Seq.transcriptome.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.transcriptome.gdc_realn.bam 2049994455 BAM transcriptome harmonized CPTAC3 9ff88287-ad08-496c-8226-91b39f87d868 d28f1d7d052922220fda08ef222beaee {"aliquot_tag": "ALQ_62c5df02", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.WGS.N C3L-00997 HNSCC WGS blood_normal CPT0124760002 CPT0124760002.WholeGenome.RP-1303.bam 60254780382 BAM submitted_aligned CPTAC3 fc38aa9c-e395-4060-b519-a28e277483d5 f5c06d6418788f1baa328c5100287fba {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00997.WGS.N.hg38 C3L-00997 HNSCC WGS blood_normal CPT0124760002 92aa3418-7075-4520-ae3b-21a3ebbe0b27_wgs_gdc_realn.bam 87076793354 BAM harmonized CPTAC3 74db5359-40ee-4ae9-b386-3e6b79800f6e a978e5ad8595706c0ef11e2d481115b7 {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00997.WGS.T C3L-00997 HNSCC WGS tumor CPT0123180009 CPT0123180009.WholeGenome.RP-1303.bam 56145305636 BAM submitted_aligned CPTAC3 c9c33913-d553-4fbb-b527-0929fc2e4afe 0db402d433be9178eae3a7642ac1fb14 {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.WGS.T.hg38 C3L-00997 HNSCC WGS tumor CPT0123180009 1e3b8e97-6196-4930-9588-abbe7c613637_wgs_gdc_realn.bam 84230097730 BAM harmonized CPTAC3 6479db6e-982c-42cd-9c0c-f4b7c6bf74ae 0ef43b8d05b1c8c74ba0c5c0b3c8761e {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.WXS.A C3L-00997 HNSCC WXS tissue_normal CPT0123190006 CPT0123190006.WholeExome.RP-1303.bam 43664963011 BAM submitted_aligned CPTAC3 1a1a8d17-a6bd-43ad-9956-4109bd93c40b 7679f1a793134ffa5e3a4d39b3893783 {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.WXS.A.hg38 C3L-00997 HNSCC WXS tissue_normal CPT0123190006 0e973753-0624-4e38-bc17-6d7a27df99ba_wxs_gdc_realn.bam 60210487103 BAM harmonized CPTAC3 572349f9-41b8-4a46-94f3-63bae49c8107 0b83f9a61aed34b3eac9f4b134595463 {"aliquot_tag": "ALQ_535e428f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00997.WXS.N C3L-00997 HNSCC WXS blood_normal CPT0124760002 CPT0124760002.WholeExome.RP-1303.bam 26786173310 BAM submitted_aligned CPTAC3 32834f55-f0a2-4377-90a0-29af056722fa 70965e4fc05b30d67aba154b043da91a {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00997.WXS.N.hg38 C3L-00997 HNSCC WXS blood_normal CPT0124760002 92aa3418-7075-4520-ae3b-21a3ebbe0b27_wxs_gdc_realn.bam 37729106888 BAM harmonized CPTAC3 65627bf0-c463-49ed-950f-2a18a61e68b1 8f3204bd910fc04863ed0a7f08068e93 {"aliquot_tag": "ALQ_c59dccd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00997.WXS.T C3L-00997 HNSCC WXS tumor CPT0123180009 CPT0123180009.WholeExome.RP-1303.bam 31902550358 BAM submitted_aligned CPTAC3 93d0aef7-022f-4037-a1ed-ff103eb59e48 e81a1057b01f3947d21d2ff43f211bad {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00997.WXS.T.hg38 C3L-00997 HNSCC WXS tumor CPT0123180009 1e3b8e97-6196-4930-9588-abbe7c613637_wxs_gdc_realn.bam 42996853634 BAM harmonized CPTAC3 2b9de4e4-0f34-4dba-b986-2957d4a3c088 a54114cc6a9a0d876777e9fc319e97b0 {"aliquot_tag": "ALQ_fe8176ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.MethArray.Green.A C3L-00999 HNSCC Methylation_Array tissue_normal CPT0123280006 203219640047_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4e77463e-43b5-4c5d-9be6-273c97af00e0 35de9d87473fd05ad2a3e9a41133125f {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.MethArray.Green.T C3L-00999 HNSCC Methylation_Array tumor CPT0123260009 203271740111_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f3132582-a2f9-48e1-99d6-634e9188fbd7 038fe512ac18ef0e02c27c776b3645e6 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.MethArray.Red.A C3L-00999 HNSCC Methylation_Array tissue_normal CPT0123280006 203219640047_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 e626ad2f-463f-4a76-9d7b-c3502acbfe42 50230aaf46d58c8d9fccfa1a930891a7 {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.MethArray.Red.T C3L-00999 HNSCC Methylation_Array tumor CPT0123260009 203271740111_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 a6c43a04-3fa4-4607-9906-c553f15edf79 7000967821d3348ce8c1ec4438264962 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.miRNA-Seq.A.hg38 C3L-00999 HNSCC miRNA-Seq tissue_normal CPT0123280009 8cbf1670-c9c1-4bfb-bdf9-1ce8eb26d394_mirnaseq_gdc_realn.bam 266111168 BAM harmonized CPTAC3 a3b771e5-2f99-4153-8d80-fefc5e57fa7c 8e7a2ffaf975058bd4086a59942f3138 {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.miRNA-Seq.S3_L001_R1.T C3L-00999 HNSCC miRNA-Seq tumor CPT0123260006 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L001_R1_001.unaln.bam 216113765 BAM S3_L001_R1 submitted_unaligned CPTAC3 3db16914-0d20-4846-9435-c42d7d9e58c3 d593c993b265f2d0f03add2cf4823752 {"aliquot_tag": "ALQ_579aa7f0", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.miRNA-Seq.S41_L002_R1.A C3L-00999 HNSCC miRNA-Seq tissue_normal CPT0123280009 190228_UNC32-K00270_0151_AHYLY3BBXX_GACGAC_S41_L002_R1_001.unaln.bam 239055138 BAM S41_L002_R1 submitted_unaligned CPTAC3 c06a93a1-1123-436d-ad13-b3d3ea8aabeb fb8374872ce50f959f34d4d3683c6b5f {"aliquot_tag": "ALQ_78150400", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.miRNA-Seq.T.hg38 C3L-00999 HNSCC miRNA-Seq tumor CPT0123260006 381a8e67-2de2-4837-b7a9-98378c91c6f8_mirnaseq_gdc_realn.bam 234271060 BAM harmonized CPTAC3 cff6fd71-8897-48c9-a471-f45f031e0db1 ece753ad9a21e0100291d0fdbbf4aa3f {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.chimeric.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.chimeric.gdc_realn.bam 140187098 BAM chimeric harmonized CPTAC3 6739ce5f-fe50-4d8a-8ea7-33ee85371043 9510fe0d3cf3105d8a221b5a05731144 {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.RNA-Seq.chimeric.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.chimeric.gdc_realn.bam 262651946 BAM chimeric harmonized CPTAC3 a23575d6-877a-4f63-92ce-c01feabeb44b 929b3939cfccc12154f1d2fb76c474a8 {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.chimeric.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.chimeric.gdc_realn.bam 50079793 BAM chimeric harmonized CPTAC3 f9bef0e9-efd3-44e2-9a12-70a220251f4e 425771ec3edac2b99bebb6689e076f04 {"aliquot_tag": "ALQ_52b594c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.genomic.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.genomic.gdc_realn.bam 8257335894 BAM genomic harmonized CPTAC3 f360f6f7-1035-4c20-82ea-be95f440322d 311dd2f2a6a9a9235456ac7f59380615 {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.RNA-Seq.genomic.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.genomic.gdc_realn.bam 7997407135 BAM genomic harmonized CPTAC3 7ac9f8d0-7fdf-4108-88c0-d54a03a2add2 6c3316742d5677589a7654fed405e8c5 {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.genomic.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.genomic.gdc_realn.bam 30378571373 BAM genomic harmonized CPTAC3 f8500269-6ebd-4f90-9be6-289de1adbb32 f72d3a529d8c83bf848094bde579edfd {"aliquot_tag": "ALQ_52b594c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.S1_L001_R1.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R1_001.fastq.gz 3602337799 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 14ecbf5e-c51a-43e9-9b63-bb84351fde6b 2e042203720deb4df207d8cb1202b2bf {"aliquot_tag": "ALQ_579aa7f0", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.S1_L001_R2.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R2_001.fastq.gz 3982917594 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 5e996749-5d5a-455f-9bf5-ca45e9d5da48 3c82b0ffe38f86f4911fdd1a32c54755 {"aliquot_tag": "ALQ_579aa7f0", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.S26_R1.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R1_001.fastq.gz 5986804492 FASTQ S26_R1 submitted_unaligned CPTAC3 0c36ce5c-ad53-4928-a55c-e2a256d211d6 362e02d2c2fb69dded0466c1c68d84ce {"aliquot_tag": "ALQ_52b594c3", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.S26_R2.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R2_001.fastq.gz 5838493414 FASTQ S26_R2 submitted_unaligned CPTAC3 b50ef8cf-0b84-48a5-8a5e-5ba00ab97f46 ea53c22b118abee045e3ae7fc7e0df6d {"aliquot_tag": "ALQ_52b594c3", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.S4_L001_R1.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R1_001.fastq.gz 3767723611 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 95ea98d0-3858-4fb3-808a-c1ead8fcb4e6 6a630e20fd727a48aab6c1d71c4a2f2a {"aliquot_tag": "ALQ_78150400", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.RNA-Seq.S4_L001_R2.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R2_001.fastq.gz 4296533978 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 c04fed22-64f2-4f6d-80de-e10160ddef1f 480ccf50a7cf70c815b7806f5fabc218 {"aliquot_tag": "ALQ_78150400", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.RNA-Seq.transcriptome.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.transcriptome.gdc_realn.bam 12308461069 BAM transcriptome harmonized CPTAC3 1e6b1678-ee8b-485f-97ab-6bd547829fad a9f21c3c103d9ca9efdab64d7ac84cfe {"aliquot_tag": "ALQ_78150400", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.RNA-Seq.transcriptome.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.transcriptome.gdc_realn.bam 9764784210 BAM transcriptome harmonized CPTAC3 a68da4aa-466b-492e-b033-f85bfd2025bc 090bd5627a274ab109e751bd5d023a95 {"aliquot_tag": "ALQ_579aa7f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.RNA-Seq.transcriptome.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.transcriptome.gdc_realn.bam 4492905466 BAM transcriptome harmonized CPTAC3 89076a3b-2a25-4498-bf64-f53952f87fd2 030cf9f329e0ba517ed2299130f4b2de {"aliquot_tag": "ALQ_52b594c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.WGS.N C3L-00999 HNSCC WGS blood_normal CPT0124780002 CPT0124780002.WholeGenome.RP-1303.bam 61102256664 BAM submitted_aligned CPTAC3 45384f8b-7271-44cc-8188-e6e24235becd e1455436fc1292edc0ab798a480bc4ac {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00999.WGS.N.hg38 C3L-00999 HNSCC WGS blood_normal CPT0124780002 a78e438f-2565-4383-b625-43310079ac32_wgs_gdc_realn.bam 88876590392 BAM harmonized CPTAC3 03d51c99-8605-4ad4-8427-0e0c40a00af6 45312d18ec85ac4d06425a4bbcca2c8e {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00999.WGS.T C3L-00999 HNSCC WGS tumor CPT0123260009 CPT0123260009.WholeGenome.RP-1303.bam 57573204745 BAM submitted_aligned CPTAC3 67dd609a-95b4-4cf6-9c89-4376a8904f63 a2ff8d83e6d3e93ad624ac60144afd3b {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.WGS.T.hg38 C3L-00999 HNSCC WGS tumor CPT0123260009 ab838072-d27e-4066-9e36-7ff17592c06c_wgs_gdc_realn.bam 84804024704 BAM harmonized CPTAC3 1511a82d-85d0-49dc-bd4f-52c99a00de36 c6eecc69ab81284c26df98ddf61ca408 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.WXS.A C3L-00999 HNSCC WXS tissue_normal CPT0123280006 CPT0123280006.WholeExome.RP-1303.bam 43947148246 BAM submitted_aligned CPTAC3 2736c656-017f-46da-931a-754fed073771 7afcac5250219b4d6603c01153de46a9 {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.WXS.A.hg38 C3L-00999 HNSCC WXS tissue_normal CPT0123280006 240c0e02-7920-4bdf-8a45-a537c91bc17b_wxs_gdc_realn.bam 60189199742 BAM harmonized CPTAC3 34a82836-23d2-45bf-b43a-1b5816207e9d 8c2f5f4729f3005b4486242178702265 {"aliquot_tag": "ALQ_e8aa1991", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-00999.WXS.N C3L-00999 HNSCC WXS blood_normal CPT0124780002 CPT0124780002.WholeExome.RP-1303.bam 29439996368 BAM submitted_aligned CPTAC3 980428d7-2ffe-4b11-b34c-efdc78f8d362 b7ce658bf1d1fe45e4340376f49bc9cc {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00999.WXS.N.hg38 C3L-00999 HNSCC WXS blood_normal CPT0124780002 a78e438f-2565-4383-b625-43310079ac32_wxs_gdc_realn.bam 40331707482 BAM harmonized CPTAC3 a0a3d309-499c-4af7-85a8-42b7de90f595 300d43cb6adc7658552d1d0e38bf1dc6 {"aliquot_tag": "ALQ_7aad72b5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-00999.WXS.T C3L-00999 HNSCC WXS tumor CPT0123260009 CPT0123260009.WholeExome.RP-1303.bam 23126509704 BAM submitted_aligned CPTAC3 4ee1d8ca-7235-4a4e-b2e0-9fee1ef9c6c1 b76ca12b56820d223f27d0aa73fce3e5 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00999.WXS.T.hg38 C3L-00999 HNSCC WXS tumor CPT0123260009 ab838072-d27e-4066-9e36-7ff17592c06c_wxs_gdc_realn.bam 31829941925 BAM harmonized CPTAC3 863d8326-034e-4eee-af13-3f6d836825ac ccf48e148459d40bebdb091af7a984a3 {"aliquot_tag": "ALQ_c725ba61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.MethArray.Green.A C3L-01000 LSCC Methylation_Array tissue_normal CPT0123370006 203219650176_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a8770a56-42ab-4a55-80b0-f28c29e625d3 ecf296400bb8a3421bd845afa8d45661 {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.MethArray.Green.T C3L-01000 LSCC Methylation_Array tumor CPT0123350009 203219650221_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5c4f3868-df1c-4d12-b6a1-407330c73d42 398c308999974390ab2b391779d2497d {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.MethArray.Red.A C3L-01000 LSCC Methylation_Array tissue_normal CPT0123370006 203219650176_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 b2afef51-5806-4ffc-9a09-d1d914124ca9 bfcb5b90871ca2e98ceebbb26cafb233 {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.MethArray.Red.T C3L-01000 LSCC Methylation_Array tumor CPT0123350009 203219650221_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 31a802d8-8491-487a-af8c-a9c14107ddd9 6c587cf2ea6b2f660cfa3bd4a435b7fe {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.miRNA-Seq.A.hg38 C3L-01000 LSCC miRNA-Seq tissue_normal CPT0123370009 21fa34fd-0fd7-4924-8a09-542f0ed4c3bf_mirnaseq_gdc_realn.bam 251801149 BAM harmonized CPTAC3 e95e30a1-445e-469f-abce-e49e3e80caed 081915d9244efd0f879d76a513209e23 {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.miRNA-Seq.S25_L002_R1.A C3L-01000 LSCC miRNA-Seq tissue_normal CPT0123370009 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGAGC_S25_L002_R1_001.unaln.bam 227157999 BAM S25_L002_R1 submitted_unaligned CPTAC3 211d0c0f-9e09-4a78-9c85-1f7c3fee8dce 5c5558c909633356b37829740f003f4e {"aliquot_tag": "ALQ_31194074", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.miRNA-Seq.S8_L001_R1.T C3L-01000 LSCC miRNA-Seq tumor CPT0123350006 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTTGA_S8_L001_R1_001.unaln.bam 231814799 BAM S8_L001_R1 submitted_unaligned CPTAC3 138e7dda-1a38-4895-b82b-6f64b56f49b2 e30f8253962cf41af0e801e6ed3c3c94 {"aliquot_tag": "ALQ_db660e85", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.miRNA-Seq.T.hg38 C3L-01000 LSCC miRNA-Seq tumor CPT0123350006 779d5564-8d58-415c-afe5-20565a018e30_mirnaseq_gdc_realn.bam 255553070 BAM harmonized CPTAC3 5d9ebe83-4420-4257-8139-f1a0d85194be a322a78c20f9e7b708c883a6eded3e20 {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.RNA-Seq.chimeric.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.chimeric.gdc_realn.bam 36279625 BAM chimeric harmonized CPTAC3 6a30ff94-5ed4-471d-9e0b-d359112c9395 b70d95ee2828b8432f66c0eccdc37044 {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.RNA-Seq.chimeric.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.chimeric.gdc_realn.bam 40232863 BAM chimeric harmonized CPTAC3 1775fda5-e51f-4e2b-8dc7-93762dc3c621 9b9fcf37a469ce33701a96f60f46dd9d {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.RNA-Seq.genomic.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.genomic.gdc_realn.bam 9974367835 BAM genomic harmonized CPTAC3 4ec53294-5416-421d-b8e9-e7cbb6e2a75c 4197ff36aab8d755b7d8146079200443 {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.RNA-Seq.genomic.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.genomic.gdc_realn.bam 9093928103 BAM genomic harmonized CPTAC3 683cd9f3-dcc4-409f-a29c-edbb3c0a6e3e 86faf7722df51a352f731c9ebd45a90f {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.RNA-Seq.S11_L003_R1.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4738534771 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 84652f9c-24e8-4689-806b-b782c8223291 983add528c7229b541481549bf8d6d1c {"aliquot_tag": "ALQ_31194074", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.RNA-Seq.S11_L003_R2.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5002039235 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 d5b739c6-d2b8-48ef-be80-dbeb2933596a ddf33b50efdad5fce677a5c0f128d170 {"aliquot_tag": "ALQ_31194074", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.RNA-Seq.S24_L006_R1.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R1_001.fastq.gz 4155612489 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 d36bfa58-2428-4e27-9746-0edb7b070682 5af94a04acca392a8e2fe2acc82584c7 {"aliquot_tag": "ALQ_db660e85", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.RNA-Seq.S24_L006_R2.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4399334101 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 b1f9fcb7-9569-49ed-a5c4-10d7f4ba73fa 7c0ff3b69f6b17a25be73ce9a87e008a {"aliquot_tag": "ALQ_db660e85", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.RNA-Seq.transcriptome.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.transcriptome.gdc_realn.bam 12524703182 BAM transcriptome harmonized CPTAC3 806c269a-3304-4f8a-90cf-fdce3f74a6eb e49cec3d44b1aa0916782a58521a4e6f {"aliquot_tag": "ALQ_31194074", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.RNA-Seq.transcriptome.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.transcriptome.gdc_realn.bam 10419126278 BAM transcriptome harmonized CPTAC3 1ed09984-d83f-47a8-8d13-e91e812d7d13 fa2755d164b87398296ad91a21a47926 {"aliquot_tag": "ALQ_db660e85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.WGS.A C3L-01000 LSCC WGS tissue_normal CPT0123370006 CPT0123370006.WholeGenome.RP-1303.bam 58108600663 BAM submitted_aligned CPTAC3 191a5c8c-1380-4b7c-b754-419066421ad1 9d7b3e1aee2428c2d21fa24e8a832b4c {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.WGS.A.hg38 C3L-01000 LSCC WGS tissue_normal CPT0123370006 e847cd05-b1e9-4333-bc61-45fbc0c69179_wgs_gdc_realn.bam 84434318781 BAM harmonized CPTAC3 0ad90838-2ef4-47a6-83d7-16c82d4eeba8 5e03af8b2c7e29fc0b0ea71638f92a4f {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.WGS.N C3L-01000 LSCC WGS blood_normal CPT0124800002 CPT0124800002.WholeGenome.RP-1303.bam 68095363146 BAM submitted_aligned CPTAC3 eceaa181-d940-4654-8608-9fa99223c88c b3c35891bb378d03cedfc981b2b7959d {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01000.WGS.N.hg38 C3L-01000 LSCC WGS blood_normal CPT0124800002 11276d27-830d-4769-ad1b-c68676e58625_wgs_gdc_realn.bam 97368795130 BAM harmonized CPTAC3 e8856e7c-0843-494a-af8e-39e107a3d76c fb3c8c1112d839336ccb7ffa185655f5 {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01000.WGS.T C3L-01000 LSCC WGS tumor CPT0123350009 CPT0123350009.WholeGenome.RP-1303.bam 60885631565 BAM submitted_aligned CPTAC3 2a371257-e30f-4e74-a17a-26ba34ccad62 3b5281f129d6096d901d07be43bbff52 {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.WGS.T.hg38 C3L-01000 LSCC WGS tumor CPT0123350009 85d26179-d508-42a7-96c2-c030e69c8600_wgs_gdc_realn.bam 89628862053 BAM harmonized CPTAC3 07bf958a-9383-4a54-8aae-39f24c5ecc8d 637c02fde3f131b6ec312bce8943e2fe {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.WXS.A C3L-01000 LSCC WXS tissue_normal CPT0123370006 CPT0123370006.WholeExome.RP-1303.bam 21323240386 BAM submitted_aligned CPTAC3 feafd43b-a790-4828-b0ff-76b37a096cef 2aa60096afe512552e4d99dc8cc11706 {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.WXS.A.hg38 C3L-01000 LSCC WXS tissue_normal CPT0123370006 e847cd05-b1e9-4333-bc61-45fbc0c69179_wxs_gdc_realn.bam 29507870591 BAM harmonized CPTAC3 ad78c3eb-5dc6-4554-97c1-6b4e6eb43775 f8296afe0496961bceb9e3241687584e {"aliquot_tag": "ALQ_a1a65de5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01000.WXS.N C3L-01000 LSCC WXS blood_normal CPT0124800002 CPT0124800002.WholeExome.RP-1303.bam 27246814658 BAM submitted_aligned CPTAC3 e097e590-c48a-4f84-9405-bc8819f01159 c10c916e40082d31775fa2fe85050005 {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01000.WXS.N.hg38 C3L-01000 LSCC WXS blood_normal CPT0124800002 11276d27-830d-4769-ad1b-c68676e58625_wxs_gdc_realn.bam 37186794701 BAM harmonized CPTAC3 a75e05d6-84aa-404a-a7e6-23e76a4fdc89 9e17785427d9db3dd43fc2fb5aae6bd2 {"aliquot_tag": "ALQ_bb8b8ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01000.WXS.T C3L-01000 LSCC WXS tumor CPT0123350009 CPT0123350009.WholeExome.RP-1303.bam 42024315173 BAM submitted_aligned CPTAC3 2e631234-e4ee-4263-a2b6-517f7f001874 b707e98a9aa4dc452b4b6bc9fab2b39b {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01000.WXS.T.hg38 C3L-01000 LSCC WXS tumor CPT0123350009 85d26179-d508-42a7-96c2-c030e69c8600_wxs_gdc_realn.bam 57160573198 BAM harmonized CPTAC3 d793c326-a30f-4dc6-848d-bb47a385666a 7f4c2fb3f890fa97f9532eda218bf8d3 {"aliquot_tag": "ALQ_4bd91314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.MethArray.Green.A C3L-01031 PDA Methylation_Array tissue_normal CPT0127290006 203561450008_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a96b353e-f242-43e3-bc77-60795d79ec5d 038feda476a9c04bf1572eda46f15193 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01031.MethArray.Green.T C3L-01031 PDA Methylation_Array tumor CPT0127270006 203220070082_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e55bf806-fe3c-4e25-a511-53445c576257 3b6d74cbb038fdd23761a132c5cca9f5 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.MethArray.Red.A C3L-01031 PDA Methylation_Array tissue_normal CPT0127290006 203561450008_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 6438ab48-a230-41cb-a065-48ea3550dc85 93ac9caee3511ab21cae54e9f0605d50 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01031.MethArray.Red.T C3L-01031 PDA Methylation_Array tumor CPT0127270006 203220070082_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 d4d319d9-911c-4a15-b818-b3bf2133a66e ee72067a507f7c1ab3e7710bbb114768 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.miRNA-Seq.S43_L002_R1.T C3L-01031 PDA miRNA-Seq tumor CPT0127270009 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 227915261 BAM S43_L002_R1 submitted_unaligned CPTAC3 1aa17a45-f236-4e1a-8aac-2cc50045a892 c8385ee061a7d348f828403668a3f7c5 {"aliquot_tag": "ALQ_e0ab7c2", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.miRNA-Seq.T.hg38 C3L-01031 PDA miRNA-Seq tumor CPT0127270009 721c9c8a-a3bd-45c3-a48f-4deca349a523_mirnaseq_gdc_realn.bam 249699282 BAM harmonized CPTAC3 df290789-88d2-40c9-8cd2-7b45e1503108 c7862d2e5212fa1a78a8be73d64bfc35 {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.RNA-Seq.chimeric.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.chimeric.gdc_realn.bam 114485904 BAM chimeric harmonized CPTAC3 dedd8a89-b9a6-4962-a44d-feff733a6b12 03e8335099081fbeaff6d540e2c9b0ea {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.genomic.gdc_realn.bam 8725779320 BAM genomic harmonized CPTAC3 5841f0bd-509d-4d70-841d-d6248b0afdcb 372a77f200d986e940f0fb1b7a4699cc {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.RNA-Seq.S56_L007_R1.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R1_001.fastq.gz 4124718224 FASTQ S56_L007_R1 submitted_unaligned CPTAC3 a26dd3d2-e43c-4e14-a1ed-3bfdf45e8a1a d76b0c3d24fc8fbaeb967716cf219c86 {"aliquot_tag": "ALQ_e0ab7c2", "sample": "S56", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.RNA-Seq.S56_L007_R2.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R2_001.fastq.gz 4413825785 FASTQ S56_L007_R2 submitted_unaligned CPTAC3 91301da0-ce18-46c8-af66-e47970a76390 ea35c50ac27801d429e0129ff5b85b95 {"aliquot_tag": "ALQ_e0ab7c2", "sample": "S56", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.RNA-Seq.transcriptome.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.transcriptome.gdc_realn.bam 12564205246 BAM transcriptome harmonized CPTAC3 f26b581f-deba-4e09-8140-fc915beb3844 d83e4cd6e5aece283b727fd645c6fd13 {"aliquot_tag": "ALQ_e0ab7c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.Targeted.T C3L-01031 PDA Targeted_Sequencing tumor CPT0127270006_1 CPT0127270006_1.CustomSelection.RP-1303.PDO-18786.bam 5045331329 BAM submitted_aligned CPTAC3 9297de8f-2235-468f-bda8-39a96769338c 62bbea559cf4dd21d2a9bbf6cfb9da4a {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.Targeted.T.hg38 C3L-01031 PDA Targeted_Sequencing tumor CPT0127270006_1 00638581-641f-489f-b9a7-e3977e1f205a_targetedsequencing_gdc_realn.bam 7031936170 BAM harmonized CPTAC3 16db0593-aa61-4760-9a5f-7e7e45335e30 f3cda9152aeb15ace714b0965c027b67 {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.WGS.A C3L-01031 PDA WGS tissue_normal CPT0127290006 CPT0127290006.WholeGenome.RP-1303.bam 68947923606 BAM submitted_aligned CPTAC3 2d367b28-03d9-4037-aaa5-43eaa6564933 c25a4b01dd63b082d161bd1073be94e7 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01031.WGS.A.hg38 C3L-01031 PDA WGS tissue_normal CPT0127290006 1387c555-23d6-476a-9447-1cc6a66dd065_wgs_gdc_realn.bam 102484139312 BAM harmonized CPTAC3 35da4930-c750-40b2-8ed1-755994133099 59ccc6574cb5e2739f46daff1adc4d1e {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01031.WGS.N C3L-01031 PDA WGS blood_normal CPT0128520002 CPT0128520002.WholeGenome.RP-1303.bam 65600126839 BAM submitted_aligned CPTAC3 4c5cd2a3-2060-4848-998a-a541d4143ac0 52d7b7da53265d13b1cfe4743aefb261 {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01031.WGS.N.hg38 C3L-01031 PDA WGS blood_normal CPT0128520002 f2683a7b-a49a-48af-91ee-c9185ea9ee2b_wgs_gdc_realn.bam 95686085424 BAM harmonized CPTAC3 9e025f7e-69fd-4ead-b0ec-3fd303ed6950 156bf9e31befae29f552b6ade6d860f6 {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01031.WGS.T C3L-01031 PDA WGS tumor CPT0127270006 CPT0127270006.WholeGenome.RP-1303.bam 69119612211 BAM submitted_aligned CPTAC3 1ecb6992-9789-47e0-ad65-c5e077e9ff39 dff466e27359dfb064f5ad5eaca3b5bc {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.WGS.T.hg38 C3L-01031 PDA WGS tumor CPT0127270006 1f3f0768-6250-4695-8d3f-989ec70b0b7a_wgs_gdc_realn.bam 101716793422 BAM harmonized CPTAC3 64832014-185f-4fb8-8412-aae7839a6afb d3de2609268a9e6344ec912430520774 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.WXS.A C3L-01031 PDA WXS tissue_normal CPT0127290006 CPT0127290006.WholeExome.RP-1303.bam 30699872085 BAM submitted_aligned CPTAC3 d77b2d08-c63b-4d57-afb9-c1e5a07f470c 75671c7aa25700efc36cfecc0e24eff0 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01031.WXS.A.hg38 C3L-01031 PDA WXS tissue_normal CPT0127290006 1387c555-23d6-476a-9447-1cc6a66dd065_wxs_gdc_realn.bam 41698060907 BAM harmonized CPTAC3 e8676515-3278-40ac-94bf-49e1d866f496 83e46f80f22412c0384f217626ec3825 {"aliquot_tag": "ALQ_21851432", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01031.WXS.N C3L-01031 PDA WXS blood_normal CPT0128520002 CPT0128520002.WholeExome.RP-1303.bam 32529297464 BAM submitted_aligned CPTAC3 538aacf8-df4b-4c51-a7be-497704541baa 01f9fa7e761232c7648126e8e07a21db {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01031.WXS.N.hg38 C3L-01031 PDA WXS blood_normal CPT0128520002 f2683a7b-a49a-48af-91ee-c9185ea9ee2b_wxs_gdc_realn.bam 44380355106 BAM harmonized CPTAC3 9b512fa1-7285-4601-b1bd-2e7420eb1887 2eaa6d6dd1142585d77914823be6cc14 {"aliquot_tag": "ALQ_ba75a16b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01031.WXS.T C3L-01031 PDA WXS tumor CPT0127270006_1 CPT0127270006_1.WholeExome.RP-1303.bam 79057839542 BAM submitted_aligned CPTAC3 a6a35f8f-ef5f-4955-8022-fa8e688a01f6 5046ed28769b476596f5bc4282547461 {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.WXS.T C3L-01031 PDA WXS tumor CPT0127270006 CPT0127270006.WholeExome.RP-1303.bam 43194782152 BAM submitted_aligned CPTAC3 558879b4-6489-4c7b-b61a-3a9c4c2431d7 ca363a7d5e0ce2ecca8adec4ba2ce9ee {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.WXS.T.hg38 C3L-01031 PDA WXS tumor CPT0127270006_1 00638581-641f-489f-b9a7-e3977e1f205a_wxs_gdc_realn.bam 108982492276 BAM harmonized CPTAC3 de67e714-bfec-421b-8a64-30b7cc83d5d3 63a2b68c103461fb02bacb20e2cb2d15 {"aliquot_tag": "ALQ_8ab1898a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01031.WXS.T.hg38 C3L-01031 PDA WXS tumor CPT0127270006 1f3f0768-6250-4695-8d3f-989ec70b0b7a_wxs_gdc_realn.bam 59367704682 BAM harmonized CPTAC3 a4149f81-c773-48bf-98dd-65252c5b8e19 fb6ad71bfe1e6547a36b90ed0c276200 {"aliquot_tag": "ALQ_9eb5aa53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_8137371.WXS.T C3L-01032 PDA WXS tumor CPT0170510019 CPT0170510019.WholeExome.RP-1303.bam 60472160349 BAM submitted_aligned CPTAC3 cdeb2cfd-8a06-455e-8e84-b7b9235d2373 2c34dc6a2e82796659661516ba3a1f7a {"aliquot_tag": "DUP_8137371", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_8137371.WXS.T.hg38 C3L-01032 PDA WXS tumor CPT0170510019 d30ab124-bcd9-49ba-bf31-10a7bfa5cfdb_wxs_gdc_realn.bam 84162158646 BAM harmonized CPTAC3 a5f1081e-8347-481c-8f09-cc68fdaa2e48 38a14481029991254a3f23154899fbe2 {"aliquot_tag": "DUP_8137371", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.MethArray.Green.T C3L-01032 PDA Methylation_Array tumor CPT0170510026 203561620054_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5352929d-5535-4b00-b982-878411b63c06 c2b60e544fbf0e10ab4c2ca97379b977 {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.MethArray.Red.T C3L-01032 PDA Methylation_Array tumor CPT0170510026 203561620054_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 7b6f794c-f6e3-4b16-ab8e-00ba973c4b65 4715356352c05a8be9e4cf3a452d582c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.Targeted.T C3L-01032 PDA Targeted_Sequencing tumor CPT0170510026 CPT0170510026.CustomSelection.RP-1303.PDO-18786.bam 4846685904 BAM submitted_aligned CPTAC3 3eca7225-1860-4f9a-9ce4-56488aaffd20 a3dfd3370f3416b63564657217a685aa {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.Targeted.T.hg38 C3L-01032 PDA Targeted_Sequencing tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_targetedsequencing_gdc_realn.bam 6929108652 BAM harmonized CPTAC3 ae1f69ba-fd3f-4e13-9b35-45da1f05b555 efc7937dd955a0f266a2684382de7c1c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.WGS.T C3L-01032 PDA WGS tumor CPT0170510026 CPT0170510026.WholeGenome.RP-1303.bam 65030423125 BAM submitted_aligned CPTAC3 cd756237-e800-4591-a9f5-e23142047d4b 91cacd2ceb0bf819b2a9a70e671ff29f {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.WGS.T.hg38 C3L-01032 PDA WGS tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_wgs_gdc_realn.bam 95856631733 BAM harmonized CPTAC3 aeb6c92c-5a7b-4439-b74d-b2c0fba9d359 c38c190e4a26b47361ecb5f0eef5c96c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.WXS.T C3L-01032 PDA WXS tumor CPT0170510026 CPT0170510026.WholeExome.RP-1303.bam 45869354525 BAM submitted_aligned CPTAC3 b37b103a-d2b2-45a4-86f2-b26464796cfb 4679ab3cbdaef3d21174352ca48f7440 {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.DUP_b3813d23.WXS.T.hg38 C3L-01032 PDA WXS tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_wxs_gdc_realn.bam 63667596295 BAM harmonized CPTAC3 e31e9424-a0b1-41c1-b75c-f3af979cc6f0 438e2c980054b4a65e3528fa4c5f954c {"aliquot_tag": "DUP_b3813d23", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.miRNA-Seq.S5_L002_R1.T C3L-01032 PDA miRNA-Seq tumor CPT0170510016 190108_UNC31-K00269_0176_AHYGLVBBXX_ACAGTG_S5_L002_R1_001.unaln.bam 202131610 BAM S5_L002_R1 submitted_unaligned CPTAC3 97f69125-efcc-4e5a-9416-5510fff2fd5a 8522ffb627d0623e984b028cca8d2a55 {"aliquot_tag": "ALQ_98ac6ee0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.miRNA-Seq.T.hg38 C3L-01032 PDA miRNA-Seq tumor CPT0170510016 89b8448a-02ed-45c9-9838-b41e58a9dfbe_mirnaseq_gdc_realn.bam 223690190 BAM harmonized CPTAC3 532ec148-d2c3-42df-8d24-b9a4a378fb83 041f9c1c038cc4a0b7866e5014d68830 {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.RNA-Seq.chimeric.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.chimeric.gdc_realn.bam 23880671 BAM chimeric harmonized CPTAC3 e908fecf-8666-4795-b2f6-655b6c20e2a0 77a7bed59ae28d41102bded1f6b1bcbc {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.RNA-Seq.genomic.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.genomic.gdc_realn.bam 17036357259 BAM genomic harmonized CPTAC3 435b8294-0b07-4ee7-a327-0b9780e9212d 70c99b79aad0bff32cdaad40e35a2088 {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.RNA-Seq.S3_L001_R1.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4897431197 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 7a970896-a786-4466-8b48-f0fc47eb3573 9b6ddcb70a653398f6933d4ba2185b9e {"aliquot_tag": "ALQ_98ac6ee0", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.RNA-Seq.S3_L001_R2.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 5416472857 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 178f804a-0edc-4761-9125-5104b06a2443 308e5b22074d74b762d68cc3523e63da {"aliquot_tag": "ALQ_98ac6ee0", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.RNA-Seq.transcriptome.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.transcriptome.gdc_realn.bam 11875234210 BAM transcriptome harmonized CPTAC3 54a5d162-6269-4b2b-a882-b1578b1ee6b9 656c51283fa8df3364c6e33b89b0e81f {"aliquot_tag": "ALQ_98ac6ee0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01032.WGS.N C3L-01032 PDA WGS blood_normal CPT0167270002 CPT0167270002.WholeGenome.RP-1303.bam 59559164807 BAM submitted_aligned CPTAC3 ec689404-8366-4793-aa48-7d7faacc975f b6156467e3763b1c39238fdb86bfd9ab {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01032.WGS.N.hg38 C3L-01032 PDA WGS blood_normal CPT0167270002 39fbddfe-218a-4a59-865e-4e4d45f136f7_wgs_gdc_realn.bam 87485264872 BAM harmonized CPTAC3 fd2f7033-bbf5-4123-8239-e441e0142ef6 e1d24bcd2aa88684e95827a5c8540617 {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01032.WXS.A C3L-01032 PDA WXS tissue_normal CPT0170530038 CPT0170530038.WholeExome.RP-1303.bam 40072417441 BAM submitted_aligned CPTAC3 345637cd-f638-430c-af43-683b3ad7aff4 62ad5892185785e4e45ee1529a7402d7 {"aliquot_tag": "ALQ_37e27205", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01032.WXS.N C3L-01032 PDA WXS blood_normal CPT0167270002 CPT0167270002.WholeExome.RP-1303.bam 29254406550 BAM submitted_aligned CPTAC3 6f5110f3-ee1b-4870-846a-e4a07daaf8c7 7a98e97bea7a0b25e892afd9bb57eec9 {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01032.WXS.N.hg38 C3L-01032 PDA WXS blood_normal CPT0167270002 39fbddfe-218a-4a59-865e-4e4d45f136f7_wxs_gdc_realn.bam 39785289287 BAM harmonized CPTAC3 985e5e24-550a-4d9e-967b-108945601415 53570089d284b757275d1ab61df4aaab {"aliquot_tag": "ALQ_1d9260b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01032.WXS.T C3L-01032 PDA WXS tumor CPT0170510022 CPT0170510022.WholeExome.RP-1303.bam 60768919984 BAM submitted_aligned CPTAC3 4758f275-76bd-41b2-b57e-361d3f2006ce c2f5f95b5679db758c682621402355c1 {"aliquot_tag": "ALQ_b4ecf93a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.MethArray.Green.A C3L-01033 CCRCC Methylation_Array tissue_normal CPT0170080006 204930640024_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2838755c-4fcc-4325-b639-4932a9124cc0 702329e80c15ebbd01eadfb785908458 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01033.MethArray.Green.T C3L-01033 CCRCC Methylation_Array tumor CPT0170070006 203219670117_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c3c45cb5-bf4b-400f-8066-8bef2305bc3d fe98a1d6bfc517cd89b8d5e32a1634d2 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.MethArray.Red.A C3L-01033 CCRCC Methylation_Array tissue_normal CPT0170080006 204930640024_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 83303f71-605d-4728-8896-a1bc1b170493 4e38f9731ec292b3792e0a0aaff70c94 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01033.MethArray.Red.T C3L-01033 CCRCC Methylation_Array tumor CPT0170070006 203219670117_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 72ccf6d5-df17-4ed4-8b87-b4f8111d1b10 a35f5f79c831c40816b23bc24da0ff8f {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.miRNA-Seq.S1_L004_R1.T C3L-01033 CCRCC miRNA-Seq tumor CPT0170070009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L004_R1_001.unaln.bam 180494762 BAM S1_L004_R1 submitted_unaligned CPTAC3 ae1f5daf-b9de-413f-a7ab-b43744eb7076 20a4192b9759a32fac43129e31f7b5df {"aliquot_tag": "ALQ_ce852623", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.miRNA-Seq.T.hg38 C3L-01033 CCRCC miRNA-Seq tumor CPT0170070009 6ee3b524-eec5-451d-b5ba-c8e7b3862ceb_mirnaseq_gdc_realn.bam 204821721 BAM harmonized CPTAC3 e598e820-da3f-4d73-bb7f-665c07693337 e02347ddf297303698f41eb11891180d {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.RNA-Seq.chimeric.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.chimeric.gdc_realn.bam 24375190 BAM chimeric harmonized CPTAC3 3887c181-c6ec-47a0-8ebc-bf25d516ad25 67897cd688b144f41a295ffc7ee796d9 {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.RNA-Seq.genomic.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.genomic.gdc_realn.bam 7121413280 BAM genomic harmonized CPTAC3 d404661f-3dbc-4573-8446-474faa57c529 ec326118c4c461ed641cfcddbeb9818f {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.RNA-Seq.S12_L003_R1.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R1_001.fastq.gz 2451910737 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 e38b3802-04bf-4acb-a507-5398bd0c38d6 058413bfd5e42c4a39e20abda7b64583 {"aliquot_tag": "ALQ_ce852623", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.RNA-Seq.S12_L003_R2.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R2_001.fastq.gz 2532703481 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 101f387e-adb0-41c3-b47b-697ed9e6c824 1e889409e07ca374018c18197bf13692 {"aliquot_tag": "ALQ_ce852623", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.RNA-Seq.transcriptome.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.transcriptome.gdc_realn.bam 4536007255 BAM transcriptome harmonized CPTAC3 a457d146-0fc1-48e0-9d07-2b94c8395fe7 4a5f62234ed37183d35d7baa7cce2778 {"aliquot_tag": "ALQ_ce852623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.WGS.A C3L-01033 CCRCC WGS tissue_normal CPT0170080006 CPT0170080006.WholeGenome.RP-1303.bam 53352077053 BAM submitted_aligned CPTAC3 9d567de8-7b59-4bde-8905-de41261a16c8 dfbddb130de96bf994c9f07493309a82 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01033.WGS.A.hg38 C3L-01033 CCRCC WGS tissue_normal CPT0170080006 def2791d-a9ad-4d15-bc61-270a0c65c93d_wgs_gdc_realn.bam 79050022509 BAM harmonized CPTAC3 15b580b3-c8b4-4ec9-9811-6a4b5f86547d 05d6a71a348ed27d1c7b381b464c2bbd {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01033.WGS.N C3L-01033 CCRCC WGS blood_normal CPT0167210002 CPT0167210002.WholeGenome.RP-1303.bam 55979296355 BAM submitted_aligned CPTAC3 ae674e66-66f8-41ae-ba48-f8ed10b21000 f7f76364427f4d5e8b8cf5feea20f669 {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01033.WGS.N.hg38 C3L-01033 CCRCC WGS blood_normal CPT0167210002 60dcb85e-983c-4697-ac38-d4cd8052dc7c_wgs_gdc_realn.bam 80065490022 BAM harmonized CPTAC3 04bcb590-fb18-4a6f-a08d-3c16b32f07ec 046b8d72c1e0eca707e30efa5bb7a976 {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01033.WGS.T C3L-01033 CCRCC WGS tumor CPT0170070006 CPT0170070006.WholeGenome.RP-1303.bam 59525687307 BAM submitted_aligned CPTAC3 3422d03d-dc06-4d8b-970c-54bd03ebd89c d6746cd18e40f19d34d03f9d111bdcb7 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.WGS.T.hg38 C3L-01033 CCRCC WGS tumor CPT0170070006 a1a969cc-5503-4353-b0e5-76d3049a73fe_wgs_gdc_realn.bam 85901287477 BAM harmonized CPTAC3 15b1f404-ce56-44b5-b29a-33da9c80918c 724a298ee3a9e92d5eab0a0ed34fc8e1 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.WXS.A C3L-01033 CCRCC WXS tissue_normal CPT0170080006 CPT0170080006.WholeExome.RP-1303.bam 18697649766 BAM submitted_aligned CPTAC3 af65270a-2299-4b79-9670-dfe23d4a17c6 2c2dd283473fab694f917bec4a768ef6 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01033.WXS.A.hg38 C3L-01033 CCRCC WXS tissue_normal CPT0170080006 def2791d-a9ad-4d15-bc61-270a0c65c93d_wxs_gdc_realn.bam 25411218094 BAM harmonized CPTAC3 c3dcd4d1-11c7-42ab-b153-4ccb0147a632 3f44924b68cd1bd5ac765ef85818c015 {"aliquot_tag": "ALQ_dc6aac63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01033.WXS.N C3L-01033 CCRCC WXS blood_normal CPT0167210002 CPT0167210002.WholeExome.RP-1303.bam 21265594693 BAM submitted_aligned CPTAC3 d5c23347-7734-411d-b977-2865e212e292 df5e428b95e0c39d0523dda1d4980224 {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01033.WXS.N.hg38 C3L-01033 CCRCC WXS blood_normal CPT0167210002 60dcb85e-983c-4697-ac38-d4cd8052dc7c_wxs_gdc_realn.bam 29773842604 BAM harmonized CPTAC3 dc9b34f0-38cc-4e37-ab69-37b521840441 a6ffa19748825dd9f9afb86bc8f5305a {"aliquot_tag": "ALQ_92d29510", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01033.WXS.T C3L-01033 CCRCC WXS tumor CPT0170070006 CPT0170070006.WholeExome.RP-1303.bam 24878033548 BAM submitted_aligned CPTAC3 6cb1a2ae-e31c-45f2-9e4a-9aef419ea6e1 66e4ef5e2e882ba51bd9821a334ad953 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01033.WXS.T.hg38 C3L-01033 CCRCC WXS tumor CPT0170070006 a1a969cc-5503-4353-b0e5-76d3049a73fe_wxs_gdc_realn.bam 33867502350 BAM harmonized CPTAC3 cb74367a-1056-41d6-846e-a5089e194132 b39393bfe8501b676a9b9890e8b69778 {"aliquot_tag": "ALQ_5e3a3bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.MethArray.Green.A C3L-01034 CCRCC Methylation_Array tissue_normal CPT0170170006 204930640064_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 5f300c77-ce5b-48dd-9152-21198b07af9d 9f8933c396af91d5db7870b96c57fa98 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01034.MethArray.Green.T C3L-01034 CCRCC Methylation_Array tumor CPT0170150006 203219640102_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 f9454ce6-48cb-4988-b35b-3251129e63cc 4619b5dc1ab077a1a1a18504859848de {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.MethArray.Red.A C3L-01034 CCRCC Methylation_Array tissue_normal CPT0170170006 204930640064_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 731fffa0-3769-4f8f-8ca2-eed59b4d93d8 995f8d61e38ee5ac2102872cd59e6d4e {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01034.MethArray.Red.T C3L-01034 CCRCC Methylation_Array tumor CPT0170150006 203219640102_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 4d6dd61f-c8c4-44f5-af6a-ac55be663715 b6efd4e976d203f12ae1e840e0c36a89 {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.miRNA-Seq.S43_L008_R1.T C3L-01034 CCRCC miRNA-Seq tumor CPT0170150009 190228_UNC32-K00270_0151_AHYLY3BBXX_TACAGC_S43_L008_R1_001.unaln.bam 202897670 BAM S43_L008_R1 submitted_unaligned CPTAC3 2d97c31e-2179-4a86-901d-bd5e86a1f66f 28d461d8ec28b45d4dc7cb25652703e1 {"aliquot_tag": "ALQ_7f19a6e6", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.miRNA-Seq.T.hg38 C3L-01034 CCRCC miRNA-Seq tumor CPT0170150009 e1781859-e635-43e6-863e-f20117458466_mirnaseq_gdc_realn.bam 222681790 BAM harmonized CPTAC3 791d25a6-6275-4cdc-9eb4-3b59e2d7c43a d246698fce6a12bef529c0984f5b4ae1 {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.RNA-Seq.chimeric.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.chimeric.gdc_realn.bam 93685922 BAM chimeric harmonized CPTAC3 a75d144b-8203-40c4-8fee-fa9fe3042978 0e71ff0756a6bc106bf470caebeb66ad {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.RNA-Seq.genomic.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.genomic.gdc_realn.bam 17660128092 BAM genomic harmonized CPTAC3 325a7a28-0498-4d38-8c5e-563eab23727d 05b117fbd53bd917d63b5802c02e578a {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.RNA-Seq.S21_L005_R1.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R1_001.fastq.gz 6080726118 FASTQ S21_L005_R1 submitted_unaligned CPTAC3 8c012fbf-51f4-47cc-b6f5-a7b3a12f036d 062c207b63e32d77c4bee167e3d7db8c {"aliquot_tag": "ALQ_7f19a6e6", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.RNA-Seq.S21_L005_R2.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R2_001.fastq.gz 6700154478 FASTQ S21_L005_R2 submitted_unaligned CPTAC3 3f9aa847-0e4b-4f04-98b6-c9ae16cc5353 a669bb7aa43354029eb425ac985980f0 {"aliquot_tag": "ALQ_7f19a6e6", "sample": "S21", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.RNA-Seq.transcriptome.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.transcriptome.gdc_realn.bam 14175252882 BAM transcriptome harmonized CPTAC3 1bbd4d91-5bbd-406a-8d7a-b739a6964b64 de99ccf852bb192529df8df0415ecba0 {"aliquot_tag": "ALQ_7f19a6e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.WGS.A C3L-01034 CCRCC WGS tissue_normal CPT0170170006 CPT0170170006.WholeGenome.RP-1303.bam 57533202244 BAM submitted_aligned CPTAC3 72bd9590-888e-495a-bfc3-da45925fa3c9 7f3eb13f749c0bca659f2fd425efad2f {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01034.WGS.A.hg38 C3L-01034 CCRCC WGS tissue_normal CPT0170170006 9705577c-f81b-4343-aee5-5569cc25fa7b_wgs_gdc_realn.bam 83907377011 BAM harmonized CPTAC3 e553eb5a-0c45-4152-9d79-106a0a1ad9d3 ead8d7ebadf629defb58473dab7c30e5 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01034.WGS.N C3L-01034 CCRCC WGS blood_normal CPT0167220002 CPT0167220002.WholeGenome.RP-1303.bam 52770253632 BAM submitted_aligned CPTAC3 9d3e244b-fe48-4903-93a9-b553c18f0779 fb6d84756754cb77322b9544d517bb3c {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01034.WGS.N.hg38 C3L-01034 CCRCC WGS blood_normal CPT0167220002 f67ab883-2ab3-4021-94a9-bfed6ab9f6e0_wgs_gdc_realn.bam 77804628667 BAM harmonized CPTAC3 1a8ff0ee-dfc1-4f0a-b9c2-65cbd33fdb85 caf41340bcba0cd35afb13cafa4d4a06 {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01034.WGS.T C3L-01034 CCRCC WGS tumor CPT0170150006 CPT0170150006.WholeGenome.RP-1303.bam 51970197915 BAM submitted_aligned CPTAC3 207273ae-8a46-4e00-9290-ef62e09e1a88 7dc5edd5b6e30f34fabb2df5681e725b {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.WGS.T.hg38 C3L-01034 CCRCC WGS tumor CPT0170150006 bc4ff1ea-5fe6-4e6e-9daf-9155e051b53d_wgs_gdc_realn.bam 76561470671 BAM harmonized CPTAC3 568d4b93-adf2-4dc4-9217-646936a7d76d 21c24f9df867024ebb925621ada059f1 {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.WXS.A C3L-01034 CCRCC WXS tissue_normal CPT0170170006 CPT0170170006.WholeExome.RP-1303.bam 19787048701 BAM submitted_aligned CPTAC3 6bc65cd0-ba7e-4c32-a5ac-ff8e5a1a2492 f0f81c90bf0fb6a28f1b483f36784924 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01034.WXS.A.hg38 C3L-01034 CCRCC WXS tissue_normal CPT0170170006 9705577c-f81b-4343-aee5-5569cc25fa7b_wxs_gdc_realn.bam 27357198044 BAM harmonized CPTAC3 cd6ee819-98f4-434d-8664-1445451f9a89 d386202bf0a0a21992d9591ecd66c7f6 {"aliquot_tag": "ALQ_9566e817", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01034.WXS.N C3L-01034 CCRCC WXS blood_normal CPT0167220002 CPT0167220002.WholeExome.RP-1303.bam 26832708037 BAM submitted_aligned CPTAC3 74cfeb0c-7018-4868-a6c5-01339a3084d8 db4bb4cf99107e4fdbb55a0cb520e5ce {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01034.WXS.N.hg38 C3L-01034 CCRCC WXS blood_normal CPT0167220002 f67ab883-2ab3-4021-94a9-bfed6ab9f6e0_wxs_gdc_realn.bam 37537648155 BAM harmonized CPTAC3 f0848e58-afdc-48d2-b14d-20ad1ed8de59 3f74e5c78dc24a3eaccc3cb2aa278940 {"aliquot_tag": "ALQ_d572efc0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01034.WXS.T C3L-01034 CCRCC WXS tumor CPT0170150006 CPT0170150006.WholeExome.RP-1303.bam 22094965300 BAM submitted_aligned CPTAC3 99ca73c6-e540-4ee5-b7b7-2cf37a7d09b7 0db5a9150700b057173910b60994c774 {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01034.WXS.T.hg38 C3L-01034 CCRCC WXS tumor CPT0170150006 bc4ff1ea-5fe6-4e6e-9daf-9155e051b53d_wxs_gdc_realn.bam 30573023513 BAM harmonized CPTAC3 a4bddd92-9d39-4dad-aa6c-f94a75345674 866d79534a67ec026adbf233b9cd6d1e {"aliquot_tag": "ALQ_efa6bb77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.MethArray.Green.A C3L-01036 PDA Methylation_Array tissue_normal CPT0123460006 203561450041_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bc270ef7-5cef-4896-b4c0-c89b728d8802 870be6896677a2fa25a5c1e94080631b {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01036.MethArray.Green.T C3L-01036 PDA Methylation_Array tumor CPT0123440006 203027390073_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c73f4fb8-6c5c-4519-9256-39bd0fbb9c06 e349d90261b254e0f92731c1eed80e96 {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.MethArray.Red.A C3L-01036 PDA Methylation_Array tissue_normal CPT0123460006 203561450041_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 818fa865-e939-4db7-b4c4-4ed7add0ca11 ff23ffd8c87c166e251c381955beec55 {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01036.MethArray.Red.T C3L-01036 PDA Methylation_Array tumor CPT0123440006 203027390073_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 c5e62c41-8e1c-462a-a468-cf131d7d055a bb7fb6d4ecd6fa05768fe383fb4a3827 {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.miRNA-Seq.S6_L001_R1.T C3L-01036 PDA miRNA-Seq tumor CPT0123440009 181119_UNC31-K00269_0165_AH27WCBBXY_CACCGG_S6_L001_R1_001.unaln.bam 221932435 BAM S6_L001_R1 submitted_unaligned CPTAC3 d4849fc1-7178-44c7-91bc-50b9e876468b a669b9600df36c407e5257705e0594de {"aliquot_tag": "ALQ_6bbc0a1c", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.miRNA-Seq.T.hg38 C3L-01036 PDA miRNA-Seq tumor CPT0123440009 61c7f248-2692-4cef-82c8-bdbeaf1b2c98_mirnaseq_gdc_realn.bam 241469725 BAM harmonized CPTAC3 1e2e2400-a414-438a-abba-2694928fe06e c0a2093e0883f82d8cf190f42d3863a4 {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.RNA-Seq.chimeric.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.chimeric.gdc_realn.bam 30434923 BAM chimeric harmonized CPTAC3 f4991f5d-168e-4233-a226-a5236a0b686e 0ffbc5294de8b5871ab4f2ada3b08eba {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.RNA-Seq.genomic.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.genomic.gdc_realn.bam 11521885212 BAM genomic harmonized CPTAC3 23342272-c1a8-42bb-87ea-dff20adb5831 cfa9beecd45f3d189926a17e0b490ec3 {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.RNA-Seq.S14_L004_R1.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4073317106 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 d03e3533-6c67-48c2-a635-ec324bc96beb 885acb514a9e33553efa34223e5020e3 {"aliquot_tag": "ALQ_6bbc0a1c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.RNA-Seq.S14_L004_R2.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4452262134 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 a78acbaf-7957-4de1-a5e0-a1bd7aad774e 200a651297b1365cfce41f111c63eebb {"aliquot_tag": "ALQ_6bbc0a1c", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.RNA-Seq.transcriptome.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.transcriptome.gdc_realn.bam 8524552389 BAM transcriptome harmonized CPTAC3 58e7db4c-d018-48b2-83f3-3b83b33f4363 e9783eed330d9cc58d8e480e1cb3500e {"aliquot_tag": "ALQ_6bbc0a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.WGS.A C3L-01036 PDA WGS tissue_normal CPT0123460006 CPT0123460006.WholeGenome.RP-1303.bam 54847673805 BAM submitted_aligned CPTAC3 9b726a7c-f420-4dbd-881e-38004d05a608 4f77a7a290dd3a478e0bb200af80944d {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01036.WGS.A.hg38 C3L-01036 PDA WGS tissue_normal CPT0123460006 601671fe-f66b-46bc-b927-b10d29a4fa86_wgs_gdc_realn.bam 79993139965 BAM harmonized CPTAC3 85559fe7-569f-41bf-a1b3-cb6b4b073cff 3288901116a1ee779f60b52ce4b3c129 {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01036.WGS.N C3L-01036 PDA WGS blood_normal CPT0124820002 CPT0124820002.WholeGenome.RP-1303.bam 67375148457 BAM submitted_aligned CPTAC3 b8d13aab-5e7a-46fa-aa2f-7f5adce3c41a bb780b461b493bd1f32f7a881629e14e {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01036.WGS.N.hg38 C3L-01036 PDA WGS blood_normal CPT0124820002 4d2cc1eb-ce1b-4e8c-ad2a-480c13132e7e_wgs_gdc_realn.bam 98956825416 BAM harmonized CPTAC3 cb3fda2c-bf86-4a53-a2e1-4f6974f00aff 86ae0850bfe01f60c6682c790455fd36 {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01036.WGS.T C3L-01036 PDA WGS tumor CPT0123440006 CPT0123440006.WholeGenome.RP-1303.bam 56929679464 BAM submitted_aligned CPTAC3 b056e723-a87c-4ffa-9258-a003fb3704de 8d2bfcff76bbd7c3972c97c1020cd36b {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.WGS.T.hg38 C3L-01036 PDA WGS tumor CPT0123440006 9d31e864-c820-47e5-9c21-ecc35e853916_wgs_gdc_realn.bam 82858276595 BAM harmonized CPTAC3 b9bd5528-b55c-478a-9b3b-96e7b6f02e6c 2804ea273c5b8636dd3ca14c4c4cb25f {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.WXS.A C3L-01036 PDA WXS tissue_normal CPT0123460006 CPT0123460006.WholeExome.RP-1303.bam 29057245628 BAM submitted_aligned CPTAC3 6d3b43ff-2bb9-45f2-b208-cf19eb6a2421 ecd6b05a421fe3b7afdff95b9096d1cc {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01036.WXS.A.hg38 C3L-01036 PDA WXS tissue_normal CPT0123460006 601671fe-f66b-46bc-b927-b10d29a4fa86_wxs_gdc_realn.bam 38571251418 BAM harmonized CPTAC3 bb9d2fa6-30a7-42ca-af8f-2d4c65133085 9aba5bfe7ae7600a15c4b5c274cda88c {"aliquot_tag": "ALQ_81c344ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01036.WXS.N C3L-01036 PDA WXS blood_normal CPT0124820002 CPT0124820002.WholeExome.RP-1303.bam 35027856377 BAM submitted_aligned CPTAC3 e7def171-c213-4139-b271-f4a850686683 47a957ddf12943bb3d9b009c47d38760 {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01036.WXS.N.hg38 C3L-01036 PDA WXS blood_normal CPT0124820002 4d2cc1eb-ce1b-4e8c-ad2a-480c13132e7e_wxs_gdc_realn.bam 47525314642 BAM harmonized CPTAC3 12528f89-6ab5-41b4-b24b-bd41c5656379 ff700a38b631fc3bb678d98ba8a3e320 {"aliquot_tag": "ALQ_c14bd8c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01036.WXS.T C3L-01036 PDA WXS tumor CPT0123440006_1 CPT0123440006_1.WholeExome.RP-1303.bam 54857899614 BAM submitted_aligned CPTAC3 30cbf47d-5cd5-4279-92e1-59c8bc0982e9 f5b94ce7334684d66be13742ca85d686 {"aliquot_tag": "ALQ_20dacb9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.WXS.T C3L-01036 PDA WXS tumor CPT0123440006 CPT0123440006.WholeExome.RP-1303.bam 30086080228 BAM submitted_aligned CPTAC3 a0029efa-6a90-466c-b75a-1a49899b36e3 e54a1a8cba9faaf4434a8a03feb7443c {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.WXS.T.hg38 C3L-01036 PDA WXS tumor CPT0123440006_1 eb3473d6-b6f5-43ef-8950-2d1c236750ed_wxs_gdc_realn.bam 74434475492 BAM harmonized CPTAC3 5c3caa94-08b0-4499-a747-c4a9211818e6 3f0034b77cee607abee64722385b4cb6 {"aliquot_tag": "ALQ_20dacb9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01036.WXS.T.hg38 C3L-01036 PDA WXS tumor CPT0123440006 9d31e864-c820-47e5-9c21-ecc35e853916_wxs_gdc_realn.bam 40333856827 BAM harmonized CPTAC3 e8b8fd03-2155-4338-a5cc-7d0b0219a89a 17e8802e6b5554ec4328f3ba8fb6e066 {"aliquot_tag": "ALQ_fb03178d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.MethArray.Green.A C3L-01037 PDA Methylation_Array tissue_normal CPT0170260007 203561620049_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4b187400-f6c5-4bdc-b7d7-763e508d4070 82af5acff2da2e8bab84ea0d5aa81974 {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01037.MethArray.Green.T C3L-01037 PDA Methylation_Array tumor CPT0170240007 203561620077_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5ba58da8-a5b9-42db-8d9f-ef94d763900c c3cb250407779af66572f47007cce2bf {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.MethArray.Red.A C3L-01037 PDA Methylation_Array tissue_normal CPT0170260007 203561620049_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 3989e7d6-537c-4762-94e9-9d52e63bded8 0a32310ba2c346d7ccbf04d96b432faf {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01037.MethArray.Red.T C3L-01037 PDA Methylation_Array tumor CPT0170240007 203561620077_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 3f6096b2-5a99-4120-9a01-ee58d95b7c32 f4adf616a90565a3c62a7752d9b1e89a {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.miRNA-Seq.S15_L006_R1.T C3L-01037 PDA miRNA-Seq tumor CPT0170240010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTATAC_S15_L006_R1_001.unaln.bam 177920787 BAM S15_L006_R1 submitted_unaligned CPTAC3 27d6e65b-dc4f-42d8-a9ee-10e248c9fddd 87ddf10882e89485ccc0b5d8f78bc5c0 {"aliquot_tag": "ALQ_a42a741d", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.miRNA-Seq.T.hg38 C3L-01037 PDA miRNA-Seq tumor CPT0170240010 94cf66d7-3b58-430d-a806-a583536c2c03_mirnaseq_gdc_realn.bam 202211778 BAM harmonized CPTAC3 97d6d853-4ca0-496e-819c-c3a632002b70 d588326158afc00a9d44654ce4ef962a {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.RNA-Seq.chimeric.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.chimeric.gdc_realn.bam 49166409 BAM chimeric harmonized CPTAC3 22f733b1-2436-485b-b2c8-42a14f5c34b6 2d36f48f59314739f8cd61339b2473a8 {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.RNA-Seq.genomic.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.genomic.gdc_realn.bam 11191249005 BAM genomic harmonized CPTAC3 6c8ad372-41d8-486e-aa4b-8213f8a483e8 cc9bc2f463ad9fa06ba9385e080aba9b {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.RNA-Seq.S16_L004_R1.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R1_001.fastq.gz 4300142452 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 0b07e406-3fb4-48ad-82cf-b98ced8f6506 c597076e4dd2080b4db4df0e391e5ba3 {"aliquot_tag": "ALQ_a42a741d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.RNA-Seq.S16_L004_R2.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R2_001.fastq.gz 4860566795 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 5f1ee857-f891-4c24-b22a-6af08f1adf46 ac462e3786d8f531275f39ee4b3f5fd6 {"aliquot_tag": "ALQ_a42a741d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.RNA-Seq.transcriptome.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.transcriptome.gdc_realn.bam 11873752722 BAM transcriptome harmonized CPTAC3 ee6306cd-93ee-42dc-a39c-4a5d0476836b 49e4feeef1755c8e5a2a20d60415a74d {"aliquot_tag": "ALQ_a42a741d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.Targeted.T C3L-01037 PDA Targeted_Sequencing tumor CPT0170240007 CPT0170240007.CustomSelection.RP-1303.PDO-18786.bam 4768677801 BAM submitted_aligned CPTAC3 7774f8e0-2d87-4602-acb8-7629b8f9d35f 0e741d0f6427a5e2965015fbe5c6d9d5 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.Targeted.T.hg38 C3L-01037 PDA Targeted_Sequencing tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_targetedsequencing_gdc_realn.bam 6557863924 BAM harmonized CPTAC3 eeb23c1d-2d13-4da0-a3d3-4452350f66dd 6f6c0e2569b19cf5e50a2133b5799c8c {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.WGS.N C3L-01037 PDA WGS blood_normal CPT0167230002 CPT0167230002.WholeGenome.RP-1303.bam 65603979454 BAM submitted_aligned CPTAC3 a79b3eaa-89d9-43e3-bcd4-85ee7c3985ac d98389fdfbfa3e7896beb094c64c6d25 {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01037.WGS.N.hg38 C3L-01037 PDA WGS blood_normal CPT0167230002 52ceffda-2a7b-4682-a7fe-3adfa2a3c703_wgs_gdc_realn.bam 95303132482 BAM harmonized CPTAC3 c2e19429-79f8-4751-b240-8101b261fa88 544b43bd86700262d19f1da30154f813 {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01037.WGS.T C3L-01037 PDA WGS tumor CPT0170240007 CPT0170240007.WholeGenome.RP-1303.bam 69003983185 BAM submitted_aligned CPTAC3 d92ed921-3053-44c6-814e-3a601e82122c 3c7ba31812b34696b38746df6f5fa3c2 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.WGS.T.hg38 C3L-01037 PDA WGS tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_wgs_gdc_realn.bam 99618467523 BAM harmonized CPTAC3 31c3a193-02db-4201-b892-f875dc956fbf 8e143d3da24bbb546ac6ac8d279d1bc6 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.WXS.A C3L-01037 PDA WXS tissue_normal CPT0170260007 CPT0170260007.WholeExome.RP-1303.bam 21799716268 BAM submitted_aligned CPTAC3 67803cfa-225f-46a6-97fb-81618264ed35 3b149ac8e90780a05f7e2d0c1d95e601 {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01037.WXS.A.hg38 C3L-01037 PDA WXS tissue_normal CPT0170260007 6e292940-a77d-4376-971f-c09a0232f2fc_wxs_gdc_realn.bam 29606641644 BAM harmonized CPTAC3 5cd663aa-5d37-4f40-a7b6-ce8b8aaed96c 324cf68c8e41a8b96ad8bee5159ed2fd {"aliquot_tag": "ALQ_5995839f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01037.WXS.N C3L-01037 PDA WXS blood_normal CPT0167230002 CPT0167230002.WholeExome.RP-1303.bam 27970977019 BAM submitted_aligned CPTAC3 5efb6db1-8287-418a-ad09-0850ba8208c3 d5507426b0c61c85e203e2a930748ac3 {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01037.WXS.N.hg38 C3L-01037 PDA WXS blood_normal CPT0167230002 52ceffda-2a7b-4682-a7fe-3adfa2a3c703_wxs_gdc_realn.bam 38308740048 BAM harmonized CPTAC3 d226760d-70d7-48be-a71f-14e4d5b6b65d 02008cfb97a45624a013a7f108af84bd {"aliquot_tag": "ALQ_e812c670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01037.WXS.T C3L-01037 PDA WXS tumor CPT0170240007 CPT0170240007.WholeExome.RP-1303.bam 46916744201 BAM submitted_aligned CPTAC3 887b4768-2410-4457-9d7d-a5c5ea3348f1 d56f5ab857cc0437a879896439b68b45 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01037.WXS.T.hg38 C3L-01037 PDA WXS tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_wxs_gdc_realn.bam 64811583822 BAM harmonized CPTAC3 e9428ff1-b9b0-4d71-bac4-ad733aa7dab8 63f5435ff5f94ccd72454e2816c46b07 {"aliquot_tag": "ALQ_2355d0ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.ANN_2a47f5ac.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.chimeric.gdc_realn.bam 207291912 BAM chimeric harmonized CPTAC3 4474ef2f-184c-49c7-8b95-bd2587088d58 e228644556ff943741cd930c1014a3ff {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.ANN_2a47f5ac.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.genomic.gdc_realn.bam 9416347355 BAM genomic harmonized CPTAC3 e5cc20a7-c3d3-42fa-bab2-844ac2c53983 ad2b61322fb7c05e9ad0820179f0c871 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.ANN_2a47f5ac.RNA-Seq.S7_L006_R1.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R1_001.fastq.gz 3261916364 FASTQ S7_L006_R1 submitted_unaligned CPTAC3 42a2998d-a333-4029-a3bb-140902ba6638 90fa6a68d5808cfb203a1c6e33c3b649 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.ANN_2a47f5ac.RNA-Seq.S7_L006_R2.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R2_001.fastq.gz 3658194729 FASTQ S7_L006_R2 submitted_unaligned CPTAC3 98741507-9f87-456c-8803-a2e4472b65e0 fc3204195784878fa93c30866a2d96f5 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S7", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.ANN_2a47f5ac.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.transcriptome.gdc_realn.bam 6871342205 BAM transcriptome harmonized CPTAC3 488d1935-f3a2-4789-adad-1ac5819b78d1 1fffba7ac010a65280948dd072953d62 {"aliquot_tag": "ANN_2a47f5ac", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_2d2a31b5.WXS.T C3L-01039 PDA WXS tumor CPT0170340035 CPT0170340035.WholeExome.RP-1303.bam 30516946825 BAM submitted_aligned CPTAC3 df6d849d-4e3b-4746-8958-9df41e86a551 11f1206021a88e2c2ea5581ac904a541 {"aliquot_tag": "DUP_2d2a31b5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_2d2a31b5.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340035 a13a2bb2-ee5e-4079-8ac8-0f24b1a6c0be_wxs_gdc_realn.bam 41850552115 BAM harmonized CPTAC3 8a834e96-c126-45c4-91d1-a55ac01ecf42 4e8691b47d1d74a3547d1af8232d1249 {"aliquot_tag": "DUP_2d2a31b5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_2f617a4d.RNA-Seq.chimeric.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.chimeric.gdc_realn.bam 124272541 BAM chimeric harmonized CPTAC3 7adb0387-2d40-4670-93e2-37f733ba2b67 1d15063cbfde0c254bc3b07ee2e57b0d {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_2f617a4d.RNA-Seq.genomic.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.genomic.gdc_realn.bam 12433296896 BAM genomic harmonized CPTAC3 4815809e-bd63-4ff7-8704-df0e7ea3df67 7b25ef134499540c9193b02b6a760182 {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_2f617a4d.RNA-Seq.S2_L001_R1.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 3972095998 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 948663db-655e-404c-bad1-9f173b3f66fb 3691eef2d97f9f8f9a0d0b16a029ef2a {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_2f617a4d.RNA-Seq.S2_L001_R2.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 4594486433 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 e598b3c9-60b8-4676-88f4-cdb8890d0b65 1ac00656d1158ec823cb2b736a56f9f6 {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_2f617a4d.RNA-Seq.transcriptome.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.transcriptome.gdc_realn.bam 8799967350 BAM transcriptome harmonized CPTAC3 20d8c8a6-735a-4384-a9ff-bdd5ff8ff7ed 14ededcb44b853977124c71adbda76d2 {"aliquot_tag": "DUP_2f617a4d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_5a2d0123.WXS.T C3L-01039 PDA WXS tumor CPT0170340034 CPT0170340034.WholeExome.RP-1303.bam 27497673579 BAM submitted_aligned CPTAC3 a4a6fa41-09d6-4dcd-ba05-d45ee6b0c47f 1fcb486b82b41731a998485462d766cf {"aliquot_tag": "DUP_5a2d0123", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_5a2d0123.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340034 eaffb165-64c1-40c2-a368-9a6791c8a11d_wxs_gdc_realn.bam 37717698204 BAM harmonized CPTAC3 d1bc5688-1af4-49ca-9b19-cad9a7cdc45c c33f4057fa14ddfd1dcbe506913279c6 {"aliquot_tag": "DUP_5a2d0123", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_5a321a60.WXS.N C3L-01039 PDA WXS blood_normal CPT0167240002 CPT0167240002.WholeExome.RP-1303.bam 26241879069 BAM submitted_aligned CPTAC3 3fb2c2c7-ea70-408c-aacb-964a08477bf5 d5087319fab0561f73f6436e1b464a68 {"aliquot_tag": "DUP_5a321a60", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01039.DUP_5a321a60.WXS.N.hg38 C3L-01039 PDA WXS blood_normal CPT0167240002 e1e83029-f44d-49b3-9c90-9b7b42934974_wxs_gdc_realn.bam 36998045601 BAM harmonized CPTAC3 3d9d35d6-5d4c-4585-bdd9-7fd46867519f 86baa17e36813663f7245cb4dc9abad9 {"aliquot_tag": "DUP_5a321a60", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01039.DUP_626ba772.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.chimeric.gdc_realn.bam 499986198 BAM chimeric harmonized CPTAC3 ec6fcf79-fa9b-4c3f-9c19-3bc0066468c3 d7038b7a2d72c8b09e394aed5c140297 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_626ba772.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.genomic.gdc_realn.bam 11620625604 BAM genomic harmonized CPTAC3 8fe59329-7913-4b64-a043-babfb59db171 6df43e6791cca593130944ee10b3bf62 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_626ba772.RNA-Seq.S26_L008_R1.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R1_001.fastq.gz 4555787969 FASTQ S26_L008_R1 submitted_unaligned CPTAC3 5d248abd-d856-44e6-a1ef-9f1ef862b4c3 d572667b4b546670fe6f373138b0df39 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_626ba772.RNA-Seq.S26_L008_R2.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R2_001.fastq.gz 5082040632 FASTQ S26_L008_R2 submitted_unaligned CPTAC3 388511d0-bfc8-402d-9559-93dbd45bbbf9 2bbc0f604abf2ce26fcb5e654d3a8d54 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S26", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_626ba772.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.transcriptome.gdc_realn.bam 12516431251 BAM transcriptome harmonized CPTAC3 2cea3948-55f8-445d-aa45-7a95fdc4dd3d 80353a011c1c05441470d70d115dbc15 {"aliquot_tag": "DUP_626ba772", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_b423600f.WXS.T C3L-01039 PDA WXS tumor CPT0170340036 CPT0170340036.WholeExome.RP-1303.bam 22556838103 BAM submitted_aligned CPTAC3 2d3cd8f9-8839-4079-b317-662471472b13 b4872754d55a0c09b1cc10fb8766aaa2 {"aliquot_tag": "DUP_b423600f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_b423600f.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340036 7c37f754-0d9c-4a21-a84c-38978e8f57a4_wxs_gdc_realn.bam 30465875706 BAM harmonized CPTAC3 cb8ecc77-fd9d-439b-b0ab-ae2a0450768d 3b835c0dc3c6fdcd74dd9beadcf6cfa9 {"aliquot_tag": "DUP_b423600f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_b6682bf7.RNA-Seq.chimeric.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.chimeric.gdc_realn.bam 42451664 BAM chimeric harmonized CPTAC3 55988630-c1da-4993-bcea-f420fe12da24 0d7d096050ee7b514bf9dc8a65a92cae {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_b6682bf7.RNA-Seq.genomic.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.genomic.gdc_realn.bam 21240819041 BAM genomic harmonized CPTAC3 7db42090-b0b4-4f50-bfc7-f779c5e651ec 8119707e4848d312610cb19ca77cbbd0 {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_b6682bf7.RNA-Seq.S28_L008_R1.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R1_001.fastq.gz 4342609058 FASTQ S28_L008_R1 submitted_unaligned CPTAC3 92607562-3a29-4eed-8216-6a50a98744d8 8e04e79ba528fa0c3abe55850d35ab7b {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_b6682bf7.RNA-Seq.S28_L008_R2.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R2_001.fastq.gz 5183019633 FASTQ S28_L008_R2 submitted_unaligned CPTAC3 6f553b66-19ae-4806-9119-d1754ea0631e 749286eec5118d2b9ec33f1e6dd1575d {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S28", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_b6682bf7.RNA-Seq.transcriptome.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.transcriptome.gdc_realn.bam 11772859789 BAM transcriptome harmonized CPTAC3 e6b85898-0b14-47fb-83a6-bb06cbd453fe c7283b111797dffe064c0c3ef8ef1e75 {"aliquot_tag": "DUP_b6682bf7", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01039.DUP_fc0f32d1.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.chimeric.gdc_realn.bam 249298102 BAM chimeric harmonized CPTAC3 5e604064-378e-4c48-a083-be60e05f56cf ad95f8c3f2c87aa7c81d206b7756bd86 {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_fc0f32d1.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.genomic.gdc_realn.bam 9440433214 BAM genomic harmonized CPTAC3 5bd7420d-f3ec-44c0-9b31-e32b25cce299 56bec64de3c825b6b539a051215df87e {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_fc0f32d1.RNA-Seq.S3_L001_R1.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 3699419632 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 4c40895f-fc34-4160-836f-3aac7e1442ce 40d10a04e15ca2783b63f5389eadc04a {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_fc0f32d1.RNA-Seq.S3_L001_R2.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 4183122327 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 2d98122a-4dd8-47f4-b5e1-56599339abb5 fe4c422b6b78796ec272a0080ec13505 {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01039.DUP_fc0f32d1.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.transcriptome.gdc_realn.bam 9029569895 BAM transcriptome harmonized CPTAC3 687f0583-b55d-49dd-a916-5b7ff04e6563 dec58bc1def552a275f433bcdaa4d5fb {"aliquot_tag": "DUP_fc0f32d1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.MethArray.Green.T C3L-01040 GBM Methylation_Array tumor CPT0171580011 203027390028_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7561727f-2db5-4d54-9e80-3dbec1e10bd6 38257262072b97dc7e7eae8db1206955 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.MethArray.Red.T C3L-01040 GBM Methylation_Array tumor CPT0171580011 203027390028_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 ff017231-75df-49ff-a006-59a6d68b665d b6e358cfd565bc881e7c3e9f03e38ad9 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.miRNA-Seq.S44_L002_R1.T C3L-01040 GBM miRNA-Seq tumor CPT0171580014 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 276089687 BAM S44_L002_R1 submitted_unaligned CPTAC3 81cef73b-464c-4fda-ba9f-d4300b045a3b 1014fa18be9388a12bcdc0f8b8503cd1 {"aliquot_tag": "ALQ_ddc56609", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.miRNA-Seq.T.hg38 C3L-01040 GBM miRNA-Seq tumor CPT0171580014 9b5c6c8d-687c-4ffb-b2a7-acd3bddafab5_mirnaseq_gdc_realn.bam 311212639 BAM harmonized CPTAC3 b4fc18c5-8c94-413a-bb7a-1033dbbe55b6 cae01bccea351997e5f29efb0193fc42 {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.RNA-Seq.chimeric.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.chimeric.gdc_realn.bam 30312050 BAM chimeric harmonized CPTAC3 c286d70d-80ab-4011-b72b-1ca10ac0595b ffd18856d82ed2cab83a3ed6512ea1cd {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.RNA-Seq.genomic.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.genomic.gdc_realn.bam 7289994249 BAM genomic harmonized CPTAC3 1a437fda-91bc-4bcb-8896-37243fe041c3 8b366375b0402434360cf06e53876512 {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.RNA-Seq.S4_L007_R1.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3363074490 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 c8a6c392-49e3-4c4f-8713-3c6d44123580 e418a2487af982eec5356b237c0a0513 {"aliquot_tag": "ALQ_ddc56609", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.RNA-Seq.S4_L007_R2.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3630546908 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 ff922fb1-2b12-4723-ad48-e33ab23fdbab 44c68228bc8a94bc35068b70c642058e {"aliquot_tag": "ALQ_ddc56609", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.RNA-Seq.transcriptome.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.transcriptome.gdc_realn.bam 8024284595 BAM transcriptome harmonized CPTAC3 c019e3db-d405-446b-b77b-67138c367aca 27422530be51d4daed1000ecaceff666 {"aliquot_tag": "ALQ_ddc56609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.WGS.N C3L-01040 GBM WGS blood_normal CPT0171540002 CPT0171540002.WholeGenome.RP-1303.bam 60117320334 BAM submitted_aligned CPTAC3 aeedc25a-2e51-4a78-8ef3-f84eabeb3126 1f4ede43087665746c76cc2b5ac97089 {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01040.WGS.N.hg38 C3L-01040 GBM WGS blood_normal CPT0171540002 30d0d5fe-c267-4b3a-b5a0-b634438c5f22_wgs_gdc_realn.bam 88428000831 BAM harmonized CPTAC3 3c45f433-c594-4e0f-90e0-e7533a606720 72dea06187f1710a77e53b7c43b58497 {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01040.WGS.T C3L-01040 GBM WGS tumor CPT0171580011 CPT0171580011.WholeGenome.RP-1303.bam 69153051054 BAM submitted_aligned CPTAC3 64826a79-9148-4509-9a22-1bf1b5867b92 93c9c7ef01b9ce502b34b3da4ed6cf7f {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.WGS.T.hg38 C3L-01040 GBM WGS tumor CPT0171580011 82659d5a-a5f5-43bd-86ed-b64dcc4d4503_wgs_gdc_realn.bam 100556072773 BAM harmonized CPTAC3 4ac3b5d9-b876-4575-80ac-d915973981de f3a7b06f5be794fd0ef06febfdc7cf98 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.WXS.N C3L-01040 GBM WXS blood_normal CPT0171540002 CPT0171540002.WholeExome.RP-1303.bam 25395481075 BAM submitted_aligned CPTAC3 03eb9141-6b98-49f3-a0e2-0697a80c96a4 8b49956fc28380605aff72f7d70112bb {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01040.WXS.N.hg38 C3L-01040 GBM WXS blood_normal CPT0171540002 30d0d5fe-c267-4b3a-b5a0-b634438c5f22_wxs_gdc_realn.bam 33852424105 BAM harmonized CPTAC3 d00be458-3366-43f0-a538-ba8c4e4125e4 26695577f86451ec2b08e3dd702e4ebb {"aliquot_tag": "ALQ_e84d1f7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01040.WXS.T C3L-01040 GBM WXS tumor CPT0171580011 CPT0171580011.WholeExome.RP-1303.bam 44377338423 BAM submitted_aligned CPTAC3 c85bc39c-b252-4e73-8f4b-a3cc50f1d8ce 350bdeb2d6c8ab959da78420ba097cea {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01040.WXS.T.hg38 C3L-01040 GBM WXS tumor CPT0171580011 82659d5a-a5f5-43bd-86ed-b64dcc4d4503_wxs_gdc_realn.bam 61052820347 BAM harmonized CPTAC3 6414ef56-04b4-4628-b074-9a4e9f1578c5 d0cc21d881ed47256c0c2233d47ed061 {"aliquot_tag": "ALQ_adaf9286", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.MethArray.Green.T C3L-01043 GBM Methylation_Array tumor CPT0127420006 203027390040_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 f8529195-9b9d-4300-8d64-84e154b0e229 c6b637b7e98398f9d7d38a56ccd2dc8f {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.MethArray.Red.T C3L-01043 GBM Methylation_Array tumor CPT0127420006 203027390040_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 3563f0ec-364e-4ba9-8a7b-8ca9476835bb 044f1e861914d0764dcdf2bc41052aea {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.miRNA-Seq.S44_L002_R1.T C3L-01043 GBM miRNA-Seq tumor CPT0127420009 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 242251931 BAM S44_L002_R1 submitted_unaligned CPTAC3 c73a90b5-7d20-4ef1-ac2c-f02707e080c6 df9121f79f9997cb323357fad8274c86 {"aliquot_tag": "ALQ_10b3dbaf", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.miRNA-Seq.T.hg38 C3L-01043 GBM miRNA-Seq tumor CPT0127420009 54f04b84-723b-444e-a180-46cb20c66670_mirnaseq_gdc_realn.bam 270837958 BAM harmonized CPTAC3 48895769-328c-4c55-9fb7-a72c16cb40ce 4ebdfe6d57781f5ba30cb2a15427431f {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.RNA-Seq.chimeric.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.chimeric.gdc_realn.bam 137852159 BAM chimeric harmonized CPTAC3 35071519-7704-4a72-876a-013521847174 b0e15661746833239005d8b308340f28 {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.RNA-Seq.genomic.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.genomic.gdc_realn.bam 8515582394 BAM genomic harmonized CPTAC3 1b07260c-8e40-42cc-9aa2-fe5a5381fef4 ee3a0f1927465f7f4069c2aea051fcaa {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.RNA-Seq.S61_L008_R1.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R1_001.fastq.gz 3865603145 FASTQ S61_L008_R1 submitted_unaligned CPTAC3 36ad73db-0ba7-4485-9c22-3ea0b8e4e6bf 55143397b69ea49a41e7ee84f5730969 {"aliquot_tag": "ALQ_10b3dbaf", "sample": "S61", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.RNA-Seq.S61_L008_R2.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R2_001.fastq.gz 4224633366 FASTQ S61_L008_R2 submitted_unaligned CPTAC3 ac0dfa9c-403e-4bc5-a36a-e06c5504187a cfe41dc389b8968ccf998ccd66ea4fc0 {"aliquot_tag": "ALQ_10b3dbaf", "sample": "S61", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.RNA-Seq.transcriptome.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.transcriptome.gdc_realn.bam 10632696788 BAM transcriptome harmonized CPTAC3 f2cef2ea-e008-4ae3-a190-0c51eb979882 043cf9cdb957d35f0247da871df5d671 {"aliquot_tag": "ALQ_10b3dbaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.WGS.N C3L-01043 GBM WGS blood_normal CPT0128550002 CPT0128550002.WholeGenome.RP-1303.bam 63355745989 BAM submitted_aligned CPTAC3 ddb6b503-bdde-443e-b66a-d9c91e1b125c 61a1d41ba1875e4615c54edbbf162e7a {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01043.WGS.N.hg38 C3L-01043 GBM WGS blood_normal CPT0128550002 a79dbdd5-f75c-475d-9779-9b789365a607_wgs_gdc_realn.bam 92189444626 BAM harmonized CPTAC3 44c2286d-e07c-4871-9f20-b4bcca0adba6 e2f3be0992ac9a7ce6986edf88a4cf47 {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01043.WGS.T C3L-01043 GBM WGS tumor CPT0127420006 CPT0127420006.WholeGenome.RP-1303.bam 59583257286 BAM submitted_aligned CPTAC3 b81e30d8-9983-4605-9066-22bb3ef50373 415dbbcd0cdb7a8b33ad268fc156b4eb {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.WGS.T.hg38 C3L-01043 GBM WGS tumor CPT0127420006 27e86e11-a91a-4a57-a421-e890ea7eced1_wgs_gdc_realn.bam 86215273880 BAM harmonized CPTAC3 37242c27-ad2c-41eb-b802-26b0a5cdcd19 c88245c4ad177b786caa71c74a7b7462 {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.WXS.N C3L-01043 GBM WXS blood_normal CPT0128550002 CPT0128550002.WholeExome.RP-1303.bam 22962039272 BAM submitted_aligned CPTAC3 3fc87b6d-21af-4960-bad5-a01a81b1e160 c4262a8ae7c9ce9e111a772b7e8ab7e3 {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01043.WXS.N.hg38 C3L-01043 GBM WXS blood_normal CPT0128550002 a79dbdd5-f75c-475d-9779-9b789365a607_wxs_gdc_realn.bam 30877335548 BAM harmonized CPTAC3 6542e2b4-503a-41dd-aea3-44b2a54f6cb5 e035557507e534724598cb046e4db675 {"aliquot_tag": "ALQ_8557d7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01043.WXS.T C3L-01043 GBM WXS tumor CPT0127420006 CPT0127420006.WholeExome.RP-1303.bam 25733223786 BAM submitted_aligned CPTAC3 c6d57e50-b14e-42d8-8abc-53937dc20726 e9e51ab78610c498bff4c7121c4f5615 {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01043.WXS.T.hg38 C3L-01043 GBM WXS tumor CPT0127420006 27e86e11-a91a-4a57-a421-e890ea7eced1_wxs_gdc_realn.bam 34796094421 BAM harmonized CPTAC3 062c9841-aff4-4519-9bc9-3deab664f5ce 34e47571fd104086abb4ec93b08796b4 {"aliquot_tag": "ALQ_800cc63e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.MethArray.Green.T C3L-01045 GBM Methylation_Array tumor CPT0123530009 203028200034_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 59ff8d06-da8d-4b5a-9245-873e79227792 d552344208d9a75fa36b0c28700de5b1 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.MethArray.Red.T C3L-01045 GBM Methylation_Array tumor CPT0123530009 203028200034_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 513a03b8-9a35-4a36-8b13-25894303b9a1 6ed66217259dee42d5be46f11f5c5eda {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.miRNA-Seq.S42_L004_R1.T C3L-01045 GBM miRNA-Seq tumor CPT0123530006 181108_UNC31-K00269_0162_AH255GBBXY_GTCCGC_S42_L004_R1_001.unaln.bam 226873124 BAM S42_L004_R1 submitted_unaligned CPTAC3 c8282e06-79d9-4740-9329-39a350ba9142 6ba2a14d50cfe6727e00759a77697cd8 {"aliquot_tag": "ALQ_827f1838", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.miRNA-Seq.T.hg38 C3L-01045 GBM miRNA-Seq tumor CPT0123530006 52412cf8-e6db-4630-b01d-0e0d34b84780_mirnaseq_gdc_realn.bam 262084693 BAM harmonized CPTAC3 0e9a344a-195f-480d-8b60-4bcf8ba40140 db275f7f4fb02d638eb6bd13d737e383 {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.RNA-Seq.chimeric.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.chimeric.gdc_realn.bam 55852122 BAM chimeric harmonized CPTAC3 63bc410a-62a8-4f6f-b0cb-33328d4a4e5d f9453bf239177de9594130839dbe10ad {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.RNA-Seq.genomic.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.genomic.gdc_realn.bam 8833936145 BAM genomic harmonized CPTAC3 6b1cf0a9-cfca-45d7-ac89-d41f525f541b bbccc842394d9c95e9dae9be4cee9c61 {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.RNA-Seq.S14_L004_R1.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R1_001.fastq.gz 3756365950 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 cf9158dd-fc4c-494a-a933-1eb497bfa401 99466af112260f9d85b0a46eada02b02 {"aliquot_tag": "ALQ_827f1838", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.RNA-Seq.S14_L004_R2.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R2_001.fastq.gz 3835368061 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 bfc91f64-f77a-4aca-a218-bd14e6152eaa f24b68fe34c8b5123535932f9f52262a {"aliquot_tag": "ALQ_827f1838", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.RNA-Seq.transcriptome.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.transcriptome.gdc_realn.bam 8822593820 BAM transcriptome harmonized CPTAC3 6faa6cd7-9135-429a-85a1-f115774888af b3fe60ccd69825527a1d330158285396 {"aliquot_tag": "ALQ_827f1838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.WGS.N C3L-01045 GBM WGS blood_normal CPT0124830002 CPT0124830002.WholeGenome.RP-1303.bam 56031587983 BAM submitted_aligned CPTAC3 e8bf7a9c-6b7a-4139-9b31-9b6feedfe9b6 be660084ecacdbe62fb1c8dd4ab93a8b {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01045.WGS.N.hg38 C3L-01045 GBM WGS blood_normal CPT0124830002 ba98100e-1c34-4d68-8b1a-f5f5114d6d7f_wgs_gdc_realn.bam 82160164266 BAM harmonized CPTAC3 18051194-5341-4e37-8c41-52ebb75a1c10 e5df46ddd707a9708078212aa14c1a40 {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01045.WGS.T C3L-01045 GBM WGS tumor CPT0123530009 CPT0123530009.WholeGenome.RP-1303.bam 57783207672 BAM submitted_aligned CPTAC3 8fa60afd-93ef-4252-9ce2-28fed207d6a5 78dfcae390f31d2d98ad5d7a12725399 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.WGS.T.hg38 C3L-01045 GBM WGS tumor CPT0123530009 b9f6bf00-d9af-4281-a9a8-e3e734cf4497_wgs_gdc_realn.bam 83135673504 BAM harmonized CPTAC3 0c2a03ad-4ae2-4b8c-9f29-38232d19a992 c7445f2ed347d4fbc79e141c5fa6b957 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.WXS.N C3L-01045 GBM WXS blood_normal CPT0124830002 CPT0124830002.WholeExome.RP-1303.bam 27947335750 BAM submitted_aligned CPTAC3 7e9e404a-0183-460b-af63-93c4670f297f 4e4bbf0247d700dbf70a8a501829446b {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01045.WXS.N.hg38 C3L-01045 GBM WXS blood_normal CPT0124830002 ba98100e-1c34-4d68-8b1a-f5f5114d6d7f_wxs_gdc_realn.bam 37436711004 BAM harmonized CPTAC3 a2f404c5-79a1-43c2-ac96-47681646b923 5fc57a66be88796660e57ac0418acac3 {"aliquot_tag": "ALQ_fc2bf171", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01045.WXS.T C3L-01045 GBM WXS tumor CPT0123530009 CPT0123530009.WholeExome.RP-1303.bam 26338867096 BAM submitted_aligned CPTAC3 7338bd83-083e-4100-9caf-f049ee5e6021 b92dadcb1d3f883a1d42e0f0406c4065 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01045.WXS.T.hg38 C3L-01045 GBM WXS tumor CPT0123530009 b9f6bf00-d9af-4281-a9a8-e3e734cf4497_wxs_gdc_realn.bam 35122766722 BAM harmonized CPTAC3 e5dc6626-57aa-4fac-8edb-150455e296bf 3b50eb0d9e243c88b305bc223d3d8a15 {"aliquot_tag": "ALQ_12c005a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.MethArray.Green.T C3L-01046 GBM Methylation_Array tumor CPT0127480007 203027390120_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 40f17f36-bcf5-4feb-8584-2bdca21398e4 3830e6bc1f3d88682793840eb6fd3f8c {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.MethArray.Red.T C3L-01046 GBM Methylation_Array tumor CPT0127480007 203027390120_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 6a7d51a6-df0c-4fea-928a-12aebbc09769 42b73a3993346ca315140ceed8139d15 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.miRNA-Seq.S45_L002_R1.T C3L-01046 GBM miRNA-Seq tumor CPT0127480010 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 233364755 BAM S45_L002_R1 submitted_unaligned CPTAC3 3d643f15-5359-457e-b972-b8b1afb32564 1464535623c9e8dea4db25e241cb22e1 {"aliquot_tag": "ALQ_3ac44aeb", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.miRNA-Seq.T.hg38 C3L-01046 GBM miRNA-Seq tumor CPT0127480010 16f58f3b-7a0a-460b-9d3d-3c4e8188c33b_mirnaseq_gdc_realn.bam 264137937 BAM harmonized CPTAC3 fe98d6a4-fd75-4175-afcd-847a1c1bcfe6 37f864197390822f44ca146af53cb008 {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.RNA-Seq.chimeric.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.chimeric.gdc_realn.bam 103005764 BAM chimeric harmonized CPTAC3 3b92d885-2426-4650-b63a-f7576eb17015 ee75fd209291560b0516f8d56bc0d85d {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.RNA-Seq.genomic.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.genomic.gdc_realn.bam 9101666864 BAM genomic harmonized CPTAC3 fba8c096-7004-4db4-98f1-e041089229cc 33513a84aece751e07a6cd2e0e55d9af {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.RNA-Seq.S60_L008_R1.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R1_001.fastq.gz 3915392286 FASTQ S60_L008_R1 submitted_unaligned CPTAC3 17f3f9f8-56ce-4669-bd4c-870295c951d5 415d6601e65602a38312a1bf70e73179 {"aliquot_tag": "ALQ_3ac44aeb", "sample": "S60", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.RNA-Seq.S60_L008_R2.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R2_001.fastq.gz 4262863355 FASTQ S60_L008_R2 submitted_unaligned CPTAC3 430cad38-35cd-4fb6-b511-eac776b17c2a a318f0b25bf6f78f9523e11692c1a5d7 {"aliquot_tag": "ALQ_3ac44aeb", "sample": "S60", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.RNA-Seq.transcriptome.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.transcriptome.gdc_realn.bam 10920664590 BAM transcriptome harmonized CPTAC3 f7052fcd-aba3-46e9-a846-ed2a3489fec5 4b8d5588d18aed2de742773e4872baa8 {"aliquot_tag": "ALQ_3ac44aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.WGS.N C3L-01046 GBM WGS blood_normal CPT0128570002 CPT0128570002.WholeGenome.RP-1303.bam 52816280424 BAM submitted_aligned CPTAC3 a03caad0-1a0c-4bf8-8b59-02b55bb142e8 9850ea7a6ca2164004835b775b863921 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01046.WGS.N.hg38 C3L-01046 GBM WGS blood_normal CPT0128570002 1cd7030a-e45b-4933-a33a-8b9695c7f05d_wgs_gdc_realn.bam 77049093776 BAM harmonized CPTAC3 ebb12c39-da23-41fa-a0a0-5acef3da13d2 056426862a51a2f27d3b834aa3a00b95 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01046.WGS.T C3L-01046 GBM WGS tumor CPT0127480007 CPT0127480007.WholeGenome.RP-1303.bam 64313443905 BAM submitted_aligned CPTAC3 518529a5-4df2-4645-a569-e7b9e0a44ad1 9f3d225b1c54d167258e065a0ce90e64 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.WGS.T.hg38 C3L-01046 GBM WGS tumor CPT0127480007 dde307c7-34d6-4c40-8adb-ab3d526d3d1d_wgs_gdc_realn.bam 93632121974 BAM harmonized CPTAC3 2472e1fe-6275-45b8-a0fa-d70d34f740df a35995d763d39539dbd18777e91c5b49 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.WXS.N C3L-01046 GBM WXS blood_normal CPT0128570002 CPT0128570002.WholeExome.RP-1303.bam 29967665044 BAM submitted_aligned CPTAC3 000f42f2-409f-4c1c-a1c4-4018044ada5e 7fc2a9436acc5a0fc9dabcfd78c621f3 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01046.WXS.N.hg38 C3L-01046 GBM WXS blood_normal CPT0128570002 1cd7030a-e45b-4933-a33a-8b9695c7f05d_wxs_gdc_realn.bam 39891340010 BAM harmonized CPTAC3 d7bba6b0-7bd3-4829-bc19-7b735f2ceb11 ea896a64bfba0ce9d47112561378d5e1 {"aliquot_tag": "ALQ_72952e1b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01046.WXS.T C3L-01046 GBM WXS tumor CPT0127480007 CPT0127480007.WholeExome.RP-1303.bam 26961608410 BAM submitted_aligned CPTAC3 3cd98b30-13fa-4d6a-a371-f2bd8150994f 8113c4a44feaab086c56e0090e40ee29 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01046.WXS.T.hg38 C3L-01046 GBM WXS tumor CPT0127480007 dde307c7-34d6-4c40-8adb-ab3d526d3d1d_wxs_gdc_realn.bam 36414305538 BAM harmonized CPTAC3 026f0b65-3379-478b-8272-6df4dda40a61 990dabd03043421236e2634eeb4bc7f1 {"aliquot_tag": "ALQ_bdbbee09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.MethArray.Green.T C3L-01048 GBM Methylation_Array tumor CPT0217190006 203219650127_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4c05d423-5a8f-4310-a023-7eff292eebbd 1098829aa7eb883e7de58c2e49d20f4c {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.MethArray.Red.T C3L-01048 GBM Methylation_Array tumor CPT0217190006 203219650127_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 81062485-340e-4a7e-8006-ca05b23a541f 663a98a857a362c840e3b315ed8528aa {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.miRNA-Seq.S22_L008_R1.T C3L-01048 GBM miRNA-Seq tumor CPT0217190009 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L008_R1_001.unaln.bam 256829737 BAM S22_L008_R1 submitted_unaligned CPTAC3 be545d00-e37e-43ad-a4e5-93c875ccbf5c 8201ceaae7ede574aa29847af798c3de {"aliquot_tag": "ALQ_80ac402b", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.miRNA-Seq.T.hg38 C3L-01048 GBM miRNA-Seq tumor CPT0217190009 6e9382f6-62a8-4d40-8655-6dca5034c3d2_mirnaseq_gdc_realn.bam 295833382 BAM harmonized CPTAC3 94b064b1-4113-4f1a-8f01-9a2b0ae2e724 ac9ba3a3eece5ddcacceeae3f59fecb9 {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.RNA-Seq.chimeric.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.chimeric.gdc_realn.bam 41047462 BAM chimeric harmonized CPTAC3 890637b9-ed1f-4d2c-aaa8-f216b59b5428 30566c0c90fe03106a8a3fabc3795919 {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.RNA-Seq.genomic.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.genomic.gdc_realn.bam 8457256253 BAM genomic harmonized CPTAC3 55b9eeb2-9e4c-4f2c-a9cb-7462e97639a0 eae375941f4b73b4f555b809a22b9f7d {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.RNA-Seq.S9_L007_R1.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R1_001.fastq.gz 3999600510 FASTQ S9_L007_R1 submitted_unaligned CPTAC3 027d5266-ce0a-4a61-bcc4-5afd0b31ea6b 4956b7f1ca26616f39758340b12e6090 {"aliquot_tag": "ALQ_80ac402b", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.RNA-Seq.S9_L007_R2.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R2_001.fastq.gz 4137948301 FASTQ S9_L007_R2 submitted_unaligned CPTAC3 1c544c27-8c98-451e-9a9f-0027fda725f9 32ed3b01530c33f9bedc4d8322dcb80b {"aliquot_tag": "ALQ_80ac402b", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.RNA-Seq.transcriptome.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.transcriptome.gdc_realn.bam 9239831720 BAM transcriptome harmonized CPTAC3 f91140bf-5960-40ba-af89-4e7b8a06175f e1970e6d7d6c50de178c346560274b6b {"aliquot_tag": "ALQ_80ac402b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.WGS.N C3L-01048 GBM WGS blood_normal CPT0220100002 CPT0220100002.WholeGenome.RP-1303.bam 64064878335 BAM submitted_aligned CPTAC3 5de49997-9916-4e86-9452-e4b289b10023 fe50d8c56a13609c31d97813356acbd7 {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01048.WGS.N.hg38 C3L-01048 GBM WGS blood_normal CPT0220100002 9866d68b-ff3e-47b2-9d84-30ce5a8cfdf4_wgs_gdc_realn.bam 91768712836 BAM harmonized CPTAC3 db210706-5e05-4ef3-b3e7-9d61b6338696 eaa455f10411d23aecf97b2433ce8592 {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01048.WGS.T C3L-01048 GBM WGS tumor CPT0217190006 CPT0217190006.WholeGenome.RP-1303.bam 51428571431 BAM submitted_aligned CPTAC3 dc0430d5-c213-4dea-83b1-edcb99d0fe95 3bc7728437a6d1cf3e23aae7f56574df {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.WGS.T.hg38 C3L-01048 GBM WGS tumor CPT0217190006 b11600b7-18e3-46a2-9e8e-f3221be28d81_wgs_gdc_realn.bam 74059258955 BAM harmonized CPTAC3 9963a8bd-a5d7-4fb2-b085-17c47001d415 1275a262c9144046a68d12e53d543817 {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.WXS.N C3L-01048 GBM WXS blood_normal CPT0220100002 CPT0220100002.WholeExome.RP-1303.bam 37314648463 BAM submitted_aligned CPTAC3 7a5002e2-4867-4006-83f7-5930022cce8c 84a6f0b009d2e72ffd6dd70fee3bf0e4 {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01048.WXS.N.hg38 C3L-01048 GBM WXS blood_normal CPT0220100002 9866d68b-ff3e-47b2-9d84-30ce5a8cfdf4_wxs_gdc_realn.bam 50682476717 BAM harmonized CPTAC3 f509f5a3-8679-4450-8a6b-9eb54a869c4e b7985051da0f5056929cacdf31997cdd {"aliquot_tag": "ALQ_5146c2bf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01048.WXS.T C3L-01048 GBM WXS tumor CPT0217190006 CPT0217190006.WholeExome.RP-1303.bam 29173769305 BAM submitted_aligned CPTAC3 3b4dce75-c83a-4965-b7cb-23e482788d8e c46d7e0c9558f84ada08e32e58c49f63 {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01048.WXS.T.hg38 C3L-01048 GBM WXS tumor CPT0217190006 b11600b7-18e3-46a2-9e8e-f3221be28d81_wxs_gdc_realn.bam 40199259354 BAM harmonized CPTAC3 44d6fbd0-8502-4695-ab2d-672192e0e655 e58f01d0911f56b499d34f23ce62e971 {"aliquot_tag": "ALQ_10135dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.MethArray.Green.T C3L-01049 GBM Methylation_Array tumor CPT0217430011 203219670147_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b669f22e-3552-44d9-9498-f9cec6480849 9168db8f2616644027e623ea9843964d {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.MethArray.Red.T C3L-01049 GBM Methylation_Array tumor CPT0217430011 203219670147_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 9b9ae1a4-c1d8-47dc-abf5-988f9454141d 219f360897defcdcda1b4e8e84426c72 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.miRNA-Seq.S23_L008_R1.T C3L-01049 GBM miRNA-Seq tumor CPT0217430014 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L008_R1_001.unaln.bam 333071684 BAM S23_L008_R1 submitted_unaligned CPTAC3 6ea23d36-8a17-42f7-9688-eff19f71602b 97ff17e95b09cc1e3ab6700438813271 {"aliquot_tag": "ALQ_fd7b84c5", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.miRNA-Seq.T.hg38 C3L-01049 GBM miRNA-Seq tumor CPT0217430014 1d611dfb-8fc5-45f5-a9a9-784c88828539_mirnaseq_gdc_realn.bam 372486917 BAM harmonized CPTAC3 3e18b753-091b-4411-9a60-523b280d07fc 0d2df50b223ddfbbdca4d2ca44fbdd79 {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.RNA-Seq.chimeric.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.chimeric.gdc_realn.bam 31309129 BAM chimeric harmonized CPTAC3 f69d9d0e-eab0-4cf8-b7ce-a562fa1d0416 da8828d5e37994491475de7b95d2f078 {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.RNA-Seq.genomic.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.genomic.gdc_realn.bam 7826198976 BAM genomic harmonized CPTAC3 46d91cb7-b2e5-4719-b7e0-1bc465bab407 2ee21bad4e28297bd714f9dad956d41e {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.RNA-Seq.S11_L007_R1.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R1_001.fastq.gz 3664572534 FASTQ S11_L007_R1 submitted_unaligned CPTAC3 61ee058b-1a61-4d46-baf4-be7ade0664e7 fbc77c4f9b23efeed20fc12d1610b92a {"aliquot_tag": "ALQ_fd7b84c5", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.RNA-Seq.S11_L007_R2.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R2_001.fastq.gz 3808741372 FASTQ S11_L007_R2 submitted_unaligned CPTAC3 c72c7346-e3c9-48f2-be17-8a9c7fc649de 154f6606ec2a44d48e19306c4b6c9c51 {"aliquot_tag": "ALQ_fd7b84c5", "sample": "S11", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.RNA-Seq.transcriptome.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.transcriptome.gdc_realn.bam 10768110944 BAM transcriptome harmonized CPTAC3 093e1a07-81d6-48f4-833c-34587b0c5e2d 2bc61a3a8352f29f96bb1f9ab9a753b0 {"aliquot_tag": "ALQ_fd7b84c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.WGS.N C3L-01049 GBM WGS blood_normal CPT0220120002 CPT0220120002.WholeGenome.RP-1303.bam 62955891917 BAM submitted_aligned CPTAC3 d118e7e1-8e32-48d8-a87a-7a1a3e38247c 7caf47880e139d4f656adb4eb3727376 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01049.WGS.N.hg38 C3L-01049 GBM WGS blood_normal CPT0220120002 6166ddc6-db74-45c1-a5cc-d3514c4ae107_wgs_gdc_realn.bam 90939929389 BAM harmonized CPTAC3 c8e3c1a8-998c-4c1e-a46d-a79800017fdb 2851a6e9eb3b91992c8e2f7b39827940 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01049.WGS.T C3L-01049 GBM WGS tumor CPT0217430011 CPT0217430011.WholeGenome.RP-1303.bam 69756927253 BAM submitted_aligned CPTAC3 cd745430-8d00-4f45-a932-fba22187db9e 6c374450b536e0d8827050d4f4b36547 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.WGS.T.hg38 C3L-01049 GBM WGS tumor CPT0217430011 9ebeb445-d973-4f09-b7eb-4e09e0c05e63_wgs_gdc_realn.bam 101047614346 BAM harmonized CPTAC3 b869642c-ccbd-4df0-aad7-73f165487f79 71e255b8f1750003368bda595baaaac0 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.WXS.N C3L-01049 GBM WXS blood_normal CPT0220120002 CPT0220120002.WholeExome.RP-1303.bam 25172472327 BAM submitted_aligned CPTAC3 acbdcbc5-ce0e-4fd9-a84c-0e6cff22a9cc 69bc12681a0c514893b1650b68476ae6 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01049.WXS.N.hg38 C3L-01049 GBM WXS blood_normal CPT0220120002 6166ddc6-db74-45c1-a5cc-d3514c4ae107_wxs_gdc_realn.bam 34210449752 BAM harmonized CPTAC3 b761d324-20aa-40d8-a667-510741906e7a fec34d2e4dbd1b618f1992d4e02fe487 {"aliquot_tag": "ALQ_2b8691df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01049.WXS.T C3L-01049 GBM WXS tumor CPT0217430011 CPT0217430011.WholeExome.RP-1303.bam 25768843041 BAM submitted_aligned CPTAC3 6f83a67d-4cc1-4e37-9107-a216a7a37c39 a786ff49fadc1b0789ce57f68c1ca086 {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01049.WXS.T.hg38 C3L-01049 GBM WXS tumor CPT0217430011 9ebeb445-d973-4f09-b7eb-4e09e0c05e63_wxs_gdc_realn.bam 35881460709 BAM harmonized CPTAC3 b8f6b182-1b4f-467f-899a-f60d73542567 b2da6f0dc9e7e20736943d196392335c {"aliquot_tag": "ALQ_8d11704a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.MethArray.Green.A C3L-01051 PDA Methylation_Array tissue_normal CPT0123670006 203273630258_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e132aa1f-4539-4cc5-a679-b3e49bfb1385 8c6dad085cbea0f4f8e7799fcb720cde {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01051.MethArray.Green.T C3L-01051 PDA Methylation_Array tumor CPT0123650009 203028200104_R03C01_Grn.idat 13676238 IDAT Green NA CPTAC3 54a7a2b7-ff65-4806-a9eb-9504e4eff526 42df3bed4224176f20c174439ecdb840 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.MethArray.Red.A C3L-01051 PDA Methylation_Array tissue_normal CPT0123670006 203273630258_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 d55c7c51-5191-49bc-8d45-3e60bbf63d92 248da51e256738248b3656085ef758e9 {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01051.MethArray.Red.T C3L-01051 PDA Methylation_Array tumor CPT0123650009 203028200104_R03C01_Red.idat 13676238 IDAT Red NA CPTAC3 ae553b2b-bec3-4beb-b56b-1b85dbb12a5f e42abeb601a1043c49f0f707321c7295 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.miRNA-Seq.S43_L004_R1.T C3L-01051 PDA miRNA-Seq tumor CPT0123650006 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L004_R1_001.unaln.bam 237231392 BAM S43_L004_R1 submitted_unaligned CPTAC3 e2e76107-273e-44c7-ad07-f4a2912ccbd2 fe2d13778aff8f71cdf05bca25656f98 {"aliquot_tag": "ALQ_8bab9f36", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.miRNA-Seq.T.hg38 C3L-01051 PDA miRNA-Seq tumor CPT0123650006 d2c5b88f-3965-46b5-af3f-e3bfbb3a22f0_mirnaseq_gdc_realn.bam 264400126 BAM harmonized CPTAC3 6bcd9512-1f8c-4c94-baa2-0fe0b7d6bf3b c104d24918e27458a3275342aab672ec {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.RNA-Seq.chimeric.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.chimeric.gdc_realn.bam 58388385 BAM chimeric harmonized CPTAC3 1519019a-d955-4bb4-a230-400976db64cb fc3bced24516077a8f35a9b5562dfd7c {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.RNA-Seq.genomic.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.genomic.gdc_realn.bam 9011577543 BAM genomic harmonized CPTAC3 4763601c-e7be-4879-9961-9ff2a6591b87 a02c6bfaea65f83afc29bf8f9da8451b {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.RNA-Seq.S9_L003_R1.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R1_001.fastq.gz 3851822716 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 ebe96da7-8ff0-44df-972f-a39af48988fc 458286664c4f0f037c1364bb8b123fb6 {"aliquot_tag": "ALQ_8bab9f36", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.RNA-Seq.S9_L003_R2.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R2_001.fastq.gz 4221160862 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 f960daa9-575a-4dbd-9361-7d39ac4d98ee 0fa6d8d5bcc1f4610c3139104243b486 {"aliquot_tag": "ALQ_8bab9f36", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.RNA-Seq.transcriptome.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.transcriptome.gdc_realn.bam 10910056002 BAM transcriptome harmonized CPTAC3 3f62fd10-e9e2-4e26-a06d-88cace567816 7807d6e6d009d7b5a1a77ff15483a89d {"aliquot_tag": "ALQ_8bab9f36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.Targeted.T C3L-01051 PDA Targeted_Sequencing tumor CPT0123650009_1 CPT0123650009_1.CustomSelection.RP-1303.PDO-18786.bam 4491199262 BAM submitted_aligned CPTAC3 89fe3652-aafe-4f66-8c25-d9203156f908 178b48cdc2859dd8463f88ac24095be2 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.Targeted.T.hg38 C3L-01051 PDA Targeted_Sequencing tumor CPT0123650009_1 a295bcde-bfa0-492b-99ad-3fa2b7a8c6ec_targetedsequencing_gdc_realn.bam 6498004543 BAM harmonized CPTAC3 135f45bf-729a-41ef-9cb9-85b0697cf11e f62df71f3187ac1d1a1b12bde7a86b82 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.WGS.A C3L-01051 PDA WGS tissue_normal CPT0123670006 CPT0123670006.WholeGenome.RP-1303.bam 63839370401 BAM submitted_aligned CPTAC3 faa13175-71f3-48a3-b01f-899758fa3233 8e4fdae102fd58e1c9790a4facbcc09e {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01051.WGS.A.hg38 C3L-01051 PDA WGS tissue_normal CPT0123670006 5b317e2e-e13f-4ddf-ab07-1ae7b428336c_wgs_gdc_realn.bam 92616864491 BAM harmonized CPTAC3 ea3d3ddb-1c20-4db4-9a9f-26169ba0b67e 658f5d15b06e8829ea7dbc7ec3466810 {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01051.WGS.N C3L-01051 PDA WGS blood_normal CPT0124870002 CPT0124870002.WholeGenome.RP-1303.bam 56526700442 BAM submitted_aligned CPTAC3 03ddb2c0-de08-4c05-b2d5-ffcbdb4d0679 5a3751a47e8a85b6b119e69b416bd001 {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01051.WGS.N.hg38 C3L-01051 PDA WGS blood_normal CPT0124870002 bec76c94-3da0-4689-9357-39119f6b1418_wgs_gdc_realn.bam 83055133465 BAM harmonized CPTAC3 ccb17c28-2526-49c4-8f13-63f57a26b124 f762c0d7efe100ee718fb30488115775 {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01051.WGS.T C3L-01051 PDA WGS tumor CPT0123650009 CPT0123650009.WholeGenome.RP-1303.bam 69983458480 BAM submitted_aligned CPTAC3 3686868f-ff02-402b-ac89-327c16d17f7d 9064877922dcd977acae343f102edfb4 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.WGS.T.hg38 C3L-01051 PDA WGS tumor CPT0123650009 7b562d7e-e216-447d-aea0-dec192194ad4_wgs_gdc_realn.bam 102470145435 BAM harmonized CPTAC3 bf1cb6c2-acb0-440b-83b1-686aeae120b8 7073c2ba20712efee871d579ddf7e418 {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.WXS.A C3L-01051 PDA WXS tissue_normal CPT0123670006 CPT0123670006.WholeExome.RP-1303.bam 22275115021 BAM submitted_aligned CPTAC3 fb71d9b2-017d-405e-81d2-cf523e39a3a7 add51c46a603c564d11555b87bea6c7b {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01051.WXS.A.hg38 C3L-01051 PDA WXS tissue_normal CPT0123670006 5b317e2e-e13f-4ddf-ab07-1ae7b428336c_wxs_gdc_realn.bam 30088753918 BAM harmonized CPTAC3 22697ae7-c81d-4f53-82a4-fda88d1b72f5 f7e4c73f3e414f33ff87f8be9ffa8d07 {"aliquot_tag": "ALQ_f16bcc56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01051.WXS.N C3L-01051 PDA WXS blood_normal CPT0124870002 CPT0124870002.WholeExome.RP-1303.bam 45998555952 BAM submitted_aligned CPTAC3 5c55f171-9bdb-41d8-b26e-11f4bddc2bfb d75283f2550bafb5762e3ea53a00c95a {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01051.WXS.N.hg38 C3L-01051 PDA WXS blood_normal CPT0124870002 bec76c94-3da0-4689-9357-39119f6b1418_wxs_gdc_realn.bam 60540772898 BAM harmonized CPTAC3 5f451ce9-d848-4cc4-89ec-7583da6184ca 24881c9bedf4f081108ac49ac5cafc0c {"aliquot_tag": "ALQ_9ab57b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01051.WXS.T C3L-01051 PDA WXS tumor CPT0123650009_1 CPT0123650009_1.WholeExome.RP-1303.bam 64442690199 BAM submitted_aligned CPTAC3 b94944ef-3fcf-49e4-b55b-0f1d04a70162 588f331c29d0775a1d0ee0379f1cf820 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.WXS.T C3L-01051 PDA WXS tumor CPT0123650009 CPT0123650009.WholeExome.RP-1303.bam 37513070756 BAM submitted_aligned CPTAC3 63e61b29-84fa-436b-8319-409682698194 89ddc8f0d459e6532671b36fee8f109f {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.WXS.T.hg38 C3L-01051 PDA WXS tumor CPT0123650009_1 a295bcde-bfa0-492b-99ad-3fa2b7a8c6ec_wxs_gdc_realn.bam 89435623390 BAM harmonized CPTAC3 18ddcf93-bd5a-4f5b-a8a4-e000a4c6468c a54f519bddbc711fadc67f013e829765 {"aliquot_tag": "ALQ_cfd48068", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01051.WXS.T.hg38 C3L-01051 PDA WXS tumor CPT0123650009 7b562d7e-e216-447d-aea0-dec192194ad4_wxs_gdc_realn.bam 52145975959 BAM harmonized CPTAC3 b28b3661-1cac-4932-99f1-a2e3e688d544 d8c98696a467bf9f7ed65d54c05ce52d {"aliquot_tag": "ALQ_1b1482a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.MethArray.Green.A C3L-01052 PDA Methylation_Array tissue_normal CPT0123770006 203561450099_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 98b16edc-bf2a-4a3b-8d1c-ab7da728fbb1 8d7fc638813a3b211335624602733723 {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01052.MethArray.Green.T C3L-01052 PDA Methylation_Array tumor CPT0123750006 203028200101_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 539c98b6-fe9e-48ef-bf2e-f52b02051cce 8a913ff6d8415c8a7f45453e4eb7a660 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.MethArray.Red.A C3L-01052 PDA Methylation_Array tissue_normal CPT0123770006 203561450099_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 3f7a731e-1375-4f50-9454-c6355312daf7 f56ae63500e54545f081193d82ce4e6c {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01052.MethArray.Red.T C3L-01052 PDA Methylation_Array tumor CPT0123750006 203028200101_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 d3499a96-7f33-48dc-9837-36ce8cac375a a4bcb0b276ab5164304a085688dd6db4 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.miRNA-Seq.S7_L001_R1.T C3L-01052 PDA miRNA-Seq tumor CPT0123750009 181119_UNC31-K00269_0165_AH27WCBBXY_CACGAT_S7_L001_R1_001.unaln.bam 263435489 BAM S7_L001_R1 submitted_unaligned CPTAC3 dabaad35-3eb7-4bc7-b044-6527769c7727 049a001857674cfc2842b82d3d1fa55d {"aliquot_tag": "ALQ_d0485102", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.miRNA-Seq.T.hg38 C3L-01052 PDA miRNA-Seq tumor CPT0123750009 e30bdd9b-fb52-4072-9d55-f7ec866497c6_mirnaseq_gdc_realn.bam 291425399 BAM harmonized CPTAC3 54b65e26-16ba-4eec-86c0-3be0b363b559 c848f3091382fcbb12914d4da0caefd5 {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.RNA-Seq.chimeric.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.chimeric.gdc_realn.bam 27728126 BAM chimeric harmonized CPTAC3 e34e194e-40be-412d-9388-abfbe95889ae ae354ba80158db64d3639bff8cf0694d {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.RNA-Seq.genomic.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.genomic.gdc_realn.bam 9050051212 BAM genomic harmonized CPTAC3 57f9faeb-2682-455b-a7b6-379a23256c69 138c7c5cd6f7059987e7540867618c2f {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.RNA-Seq.S13_L004_R1.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3824714033 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 d9a41fa8-0081-4609-92ee-7c2b2279a26e b3d6198b6165a0d8de828ce30212faa9 {"aliquot_tag": "ALQ_d0485102", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.RNA-Seq.S13_L004_R2.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4182715612 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 04e48ed4-f66d-4f12-b305-2115e55f0c4d 4033563896912edd370c9595a6c261a8 {"aliquot_tag": "ALQ_d0485102", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.RNA-Seq.transcriptome.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.transcriptome.gdc_realn.bam 11593992511 BAM transcriptome harmonized CPTAC3 031c30c7-cdda-4bb3-9374-2f21e60a6636 510d3c93409345c45cc86500b8346d7c {"aliquot_tag": "ALQ_d0485102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.Targeted.T C3L-01052 PDA Targeted_Sequencing tumor CPT0123750006_1 CPT0123750006_1.CustomSelection.RP-1303.PDO-18786.bam 4757345248 BAM submitted_aligned CPTAC3 2dd8da54-f233-4eee-a270-08cdbe522cda 864f930c77491330e1c5cb654335aab2 {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.Targeted.T.hg38 C3L-01052 PDA Targeted_Sequencing tumor CPT0123750006_1 cb7c42f5-cf99-4123-8a5d-fbdd71717020_targetedsequencing_gdc_realn.bam 6642237150 BAM harmonized CPTAC3 e6c9309a-9bae-4a8f-abf3-7d367f5852ea 50917290e701df9039c284dcf796b0a9 {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.WGS.A C3L-01052 PDA WGS tissue_normal CPT0123770006 CPT0123770006.WholeGenome.RP-1303.bam 56013973571 BAM submitted_aligned CPTAC3 d664a657-b1b4-4552-aad6-fd135437e86c 847bd5f35bb2c7ac2a6cf0f853e2a8ad {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01052.WGS.A.hg38 C3L-01052 PDA WGS tissue_normal CPT0123770006 e783a2a0-db2f-422a-9b25-081d2b84928c_wgs_gdc_realn.bam 81692115281 BAM harmonized CPTAC3 1733c592-12e1-4cee-8dfc-65a8057d3987 72ed58f3bfaacc8bd28974f770f94549 {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01052.WGS.N C3L-01052 PDA WGS blood_normal CPT0124880002 CPT0124880002.WholeGenome.RP-1303.bam 57347743883 BAM submitted_aligned CPTAC3 ee1bb425-42c4-419e-b7a5-f18074a85070 d63977ab2629a74ddebf3c87b24ba9b0 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01052.WGS.N.hg38 C3L-01052 PDA WGS blood_normal CPT0124880002 4db3dd84-d8b5-417e-af2c-95dc3951e5e9_wgs_gdc_realn.bam 83378423667 BAM harmonized CPTAC3 dac0b305-ab51-4275-b5cc-3a6f08e04d66 e07504314fabc3635d9fb66efacdfd42 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01052.WGS.T C3L-01052 PDA WGS tumor CPT0123750006 CPT0123750006.WholeGenome.RP-1303.bam 69355797854 BAM submitted_aligned CPTAC3 faa6a330-28ad-4398-9546-b32d24cd3797 0e33c3876c485906ff1c78095c30d939 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.WGS.T.hg38 C3L-01052 PDA WGS tumor CPT0123750006 8ce479b5-92c6-49e0-a431-93e66637a186_wgs_gdc_realn.bam 101691493738 BAM harmonized CPTAC3 9023f46b-f2de-4ddd-bb28-4e91ada3e15e 0d7f1ed103759d579e3f31c5fe92c5a8 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.WXS.A C3L-01052 PDA WXS tissue_normal CPT0123770006 CPT0123770006.WholeExome.RP-1303.bam 29206385450 BAM submitted_aligned CPTAC3 2d196ed7-3a8b-489b-b015-44dfacdf6872 cefd15eea063c270a0ce596b5bb6af3e {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01052.WXS.A.hg38 C3L-01052 PDA WXS tissue_normal CPT0123770006 e783a2a0-db2f-422a-9b25-081d2b84928c_wxs_gdc_realn.bam 40116993461 BAM harmonized CPTAC3 ac42e9d3-b139-48e3-9595-bfdcf5e31617 2356f9ed58dbc41aaf25ed3519f48af2 {"aliquot_tag": "ALQ_3a371ff3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01052.WXS.N C3L-01052 PDA WXS blood_normal CPT0124880002 CPT0124880002.WholeExome.RP-1303.bam 32122942747 BAM submitted_aligned CPTAC3 4973d0d4-0321-43eb-92db-48a75e718178 b4924cf64ec03d27b1419ce4b6e45822 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01052.WXS.N.hg38 C3L-01052 PDA WXS blood_normal CPT0124880002 4db3dd84-d8b5-417e-af2c-95dc3951e5e9_wxs_gdc_realn.bam 42886290222 BAM harmonized CPTAC3 d537b6e6-a491-4bc3-9d0e-5f653e1f8fac d9d6c6496e3dbcd2b095b5a0a1ded657 {"aliquot_tag": "ALQ_8bfbc060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01052.WXS.T C3L-01052 PDA WXS tumor CPT0123750006_1 CPT0123750006_1.WholeExome.RP-1303.bam 53060062627 BAM submitted_aligned CPTAC3 dc8329c3-0b68-4d01-8fcd-8b44ff0081ca b341a089c2b117e81845db7f9eda8e7d {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.WXS.T C3L-01052 PDA WXS tumor CPT0123750006 CPT0123750006.WholeExome.RP-1303.bam 26714482973 BAM submitted_aligned CPTAC3 30d933e6-89d2-434b-bf6f-820a163eea8a e668721b404da6d8584a7d9bf39021e2 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.WXS.T.hg38 C3L-01052 PDA WXS tumor CPT0123750006_1 cb7c42f5-cf99-4123-8a5d-fbdd71717020_wxs_gdc_realn.bam 72178355521 BAM harmonized CPTAC3 33f1faf2-4b69-4241-8ee3-2c2fa9df5759 c6e186ecb90610bb8a2eb24d3ac392ee {"aliquot_tag": "ALQ_822c7cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01052.WXS.T.hg38 C3L-01052 PDA WXS tumor CPT0123750006 8ce479b5-92c6-49e0-a431-93e66637a186_wxs_gdc_realn.bam 35710272737 BAM harmonized CPTAC3 4134c963-cb73-491a-bf7d-70862650105e 74e70b7105a95b08a3bceef1bca90003 {"aliquot_tag": "ALQ_40f74c93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.MethArray.Green.A C3L-01053 PDA Methylation_Array tissue_normal CPT0123890006 203273630048_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a611fa61-956f-4c58-a490-90f80272d028 60031ef20ce85fa9ddd5eaef545da8d0 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01053.MethArray.Green.T C3L-01053 PDA Methylation_Array tumor CPT0123860009 203219720211_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2385b9a1-10a1-486f-9127-3ce11be22986 0bd572198c4d8e413d90c7f4efb17d90 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.MethArray.Red.A C3L-01053 PDA Methylation_Array tissue_normal CPT0123890006 203273630048_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 9a225351-469e-40f5-afd4-ac8c61011074 86b2c086c60e7760b001ca33d7864fe9 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01053.MethArray.Red.T C3L-01053 PDA Methylation_Array tumor CPT0123860009 203219720211_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 f382c2a8-6a9d-4fdd-a77e-7833bc0b93a8 9acfd73529c2f2957ed296f7dfefa01a {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.miRNA-Seq.S44_L004_R1.T C3L-01053 PDA miRNA-Seq tumor CPT0123860006 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L004_R1_001.unaln.bam 247830813 BAM S44_L004_R1 submitted_unaligned CPTAC3 17493bc9-781b-4e63-9401-8f5ebf85fa5b 30c9ba07d6f65acd6a40b290405f0a08 {"aliquot_tag": "ALQ_f6018496", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.miRNA-Seq.T.hg38 C3L-01053 PDA miRNA-Seq tumor CPT0123860006 85694142-7852-4d41-aaa5-615c4ad67ae8_mirnaseq_gdc_realn.bam 282270192 BAM harmonized CPTAC3 da7d969a-78ad-4fec-a296-248fe46a2f73 e5b5a47a3799073e08b67e876823b91f {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.RNA-Seq.chimeric.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.chimeric.gdc_realn.bam 59064682 BAM chimeric harmonized CPTAC3 c055be0f-965f-4e20-847a-b45aed6bc9fa 9b75338cf93e96cdadfe1ec0acf7f97b {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.RNA-Seq.genomic.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.genomic.gdc_realn.bam 9471469221 BAM genomic harmonized CPTAC3 e1db1cae-3065-4591-af7a-6f3434526e92 f0826e8978e3f8934257695620c197a0 {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.RNA-Seq.S13_L004_R1.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 4191047540 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 cbb94b79-ed5d-42e8-989a-a66d75de8aa3 8799d6e44c5e1691a2a9d1b3373be2ac {"aliquot_tag": "ALQ_f6018496", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.RNA-Seq.S13_L004_R2.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4568537065 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 020b2b6d-f3b9-4fd8-94b2-29ab99d7550d 9bc83a56bb84631d081ac86a064910a3 {"aliquot_tag": "ALQ_f6018496", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.RNA-Seq.transcriptome.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.transcriptome.gdc_realn.bam 12623593859 BAM transcriptome harmonized CPTAC3 2cb3e951-6aca-4118-b3df-6d057e4b8d6a 1a5d156160d6da1989bee14aa71b620e {"aliquot_tag": "ALQ_f6018496", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.Targeted.T C3L-01053 PDA Targeted_Sequencing tumor CPT0123860009_1 CPT0123860009_1.CustomSelection.RP-1303.PDO-18786.bam 4166814508 BAM submitted_aligned CPTAC3 9203c7c3-ba09-475e-8fd8-ef87d8de2e88 cfaf212a05f9e6eedf4ba43e42c50547 {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.Targeted.T.hg38 C3L-01053 PDA Targeted_Sequencing tumor CPT0123860009_1 85a52aa4-9a42-4110-9983-0b9394f9b34d_targetedsequencing_gdc_realn.bam 5819188749 BAM harmonized CPTAC3 52a71ae9-cddb-47bb-addc-1eda6e714a3b d22f3ff72354bdec330d15de17bc2ece {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.WGS.A C3L-01053 PDA WGS tissue_normal CPT0123890006 CPT0123890006.WholeGenome.RP-1303.bam 66671610164 BAM submitted_aligned CPTAC3 3fcb1867-978e-4d14-8cc5-c43ee2cf13d1 db40f0d5814a936d4b5f8c808da13957 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01053.WGS.A.hg38 C3L-01053 PDA WGS tissue_normal CPT0123890006 d33aa65a-2310-44fe-ba3a-b522c4f8102e_wgs_gdc_realn.bam 97699394992 BAM harmonized CPTAC3 bcb91cb8-5a48-49ac-bb38-333355e7dab0 8b53b0cfd13e0084db7f58ef38704c89 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01053.WGS.N C3L-01053 PDA WGS blood_normal CPT0124900002 CPT0124900002.WholeGenome.RP-1303.bam 54013068396 BAM submitted_aligned CPTAC3 20370486-ad56-42de-8690-705d09cc6fb1 75a1f187df041449e4ba57a8e322af33 {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01053.WGS.N.hg38 C3L-01053 PDA WGS blood_normal CPT0124900002 0cb3af1d-60e7-4998-8168-e0ea79b3d994_wgs_gdc_realn.bam 78129671363 BAM harmonized CPTAC3 6c8cd51e-aa0d-4224-9c65-47ef4156ba1b 593fb37f1d4baf4b71b933d66e934fac {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01053.WGS.T C3L-01053 PDA WGS tumor CPT0123860009 CPT0123860009.WholeGenome.RP-1303.bam 56603515635 BAM submitted_aligned CPTAC3 7e3f3f59-bca2-4839-bfa8-c37d2cbebb61 41f62e0205d1629f69687efddaa0ac95 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.WGS.T.hg38 C3L-01053 PDA WGS tumor CPT0123860009 6412d507-b30e-4801-a6aa-3ef3d3eccd4d_wgs_gdc_realn.bam 81981797494 BAM harmonized CPTAC3 d402d6cc-177f-4ff3-a866-7cde5f65dffc 2b6491f4465467df0e3fba37f8696ff4 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.WXS.A C3L-01053 PDA WXS tissue_normal CPT0123890006 CPT0123890006.WholeExome.RP-1303.bam 27600689330 BAM submitted_aligned CPTAC3 ab099de5-0800-4f2f-9638-2974dd9258bb 25a37d4696fb44c18e3bf5c90298cb84 {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01053.WXS.A.hg38 C3L-01053 PDA WXS tissue_normal CPT0123890006 d33aa65a-2310-44fe-ba3a-b522c4f8102e_wxs_gdc_realn.bam 37066111501 BAM harmonized CPTAC3 bde31af1-31c7-41fc-bde1-4db5ad395ede 30186d65f2fe30c86b9cd56f6f026bea {"aliquot_tag": "ALQ_74511347", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01053.WXS.N C3L-01053 PDA WXS blood_normal CPT0124900002 CPT0124900002.WholeExome.RP-1303.bam 27328041990 BAM submitted_aligned CPTAC3 7915a4ed-9f58-4d91-9def-d4c804943f11 268a50bb6606dfd934c824156d9b339a {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01053.WXS.N.hg38 C3L-01053 PDA WXS blood_normal CPT0124900002 0cb3af1d-60e7-4998-8168-e0ea79b3d994_wxs_gdc_realn.bam 37203908781 BAM harmonized CPTAC3 6ac77010-7aa6-4994-a6e3-d1adbb8747ed 9fbcf3de892f10ffee7496d79c218585 {"aliquot_tag": "ALQ_70d75804", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01053.WXS.T C3L-01053 PDA WXS tumor CPT0123860009_1 CPT0123860009_1.WholeExome.RP-1303.bam 51976532637 BAM submitted_aligned CPTAC3 46388278-3174-4051-859d-45baf448ef1e 004be6d4646f85793798d1b064f7de93 {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.WXS.T C3L-01053 PDA WXS tumor CPT0123860009 CPT0123860009.WholeExome.RP-1303.bam 24471996738 BAM submitted_aligned CPTAC3 936c36c1-d597-4a95-a69e-01c434db3625 60e7c98e9194ce68812f8be5ed07d197 {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.WXS.T.hg38 C3L-01053 PDA WXS tumor CPT0123860009_1 85a52aa4-9a42-4110-9983-0b9394f9b34d_wxs_gdc_realn.bam 70977695583 BAM harmonized CPTAC3 5eeb3066-7ca5-4f68-a8bc-5e45437b2d41 de41c30aa3c027bc11ff9e908d35d9ea {"aliquot_tag": "ALQ_ebb688c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01053.WXS.T.hg38 C3L-01053 PDA WXS tumor CPT0123860009 6412d507-b30e-4801-a6aa-3ef3d3eccd4d_wxs_gdc_realn.bam 33071697691 BAM harmonized CPTAC3 02faeb22-ff81-4fd8-99e1-d0fc1dd15a29 b1f67f018dfbe0f3db596fca2722a5fb {"aliquot_tag": "ALQ_66be9907", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.MethArray.Green.A C3L-01054 PDA Methylation_Array tissue_normal CPT0124000006 203561620016_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 63b73522-ec47-4bff-9a73-ddd22812f0d7 f662f23b5eaf058f3e7e0a627adbd39a {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01054.MethArray.Green.T C3L-01054 PDA Methylation_Array tumor CPT0123990009 203219670066_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 daf415ed-645b-405d-b0ad-43d1369977d7 8c7414308bef79852e3d1fe250a29692 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.MethArray.Red.A C3L-01054 PDA Methylation_Array tissue_normal CPT0124000006 203561620016_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 a4c64f26-a06e-4c3a-88f6-7671daa275e4 ad5847cf82717469adbecb46f97c52a0 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01054.MethArray.Red.T C3L-01054 PDA Methylation_Array tumor CPT0123990009 203219670066_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 14446b2c-fdb7-4e5b-aa76-75d2ad61a290 7a2c36773dea804ac6c0a8aca6dd817e {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.miRNA-Seq.S45_L004_R1.T C3L-01054 PDA miRNA-Seq tumor CPT0123990006 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L004_R1_001.unaln.bam 186836891 BAM S45_L004_R1 submitted_unaligned CPTAC3 709f007c-0e3c-4eb2-8f05-076f621cf56b 81133c1fcc3f06a4d296cd86acae9ac8 {"aliquot_tag": "ALQ_bf0dc0e2", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.miRNA-Seq.T.hg38 C3L-01054 PDA miRNA-Seq tumor CPT0123990006 a08a48e3-77f1-41b7-b958-73a210dce709_mirnaseq_gdc_realn.bam 209682332 BAM harmonized CPTAC3 30a3b9f9-0b6c-49c3-abd6-47ea295a56d7 8c599614ca39c036a58cc380df0d57e0 {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.RNA-Seq.chimeric.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.chimeric.gdc_realn.bam 95092841 BAM chimeric harmonized CPTAC3 b04f1e73-d007-4faa-a05b-301f73a7bfb3 ec42361026f55b04b9313dfcbbd6eb4b {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.RNA-Seq.genomic.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.genomic.gdc_realn.bam 9726168176 BAM genomic harmonized CPTAC3 50d79e4a-806a-40f9-b963-bc65ce09369d b543118be5bdebb9ac4b5febfdd10ada {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.RNA-Seq.S16_L004_R1.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4313520630 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 3961ed21-b1d8-4af8-9383-6254a76b29bf d68d25d7eb25da341bf946b71fe922dd {"aliquot_tag": "ALQ_bf0dc0e2", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.RNA-Seq.S16_L004_R2.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4704123667 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 29aeea9d-75f1-4897-82d9-de9d1d348270 d08ac772ad7d394613a5ffc3fb5345fb {"aliquot_tag": "ALQ_bf0dc0e2", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.RNA-Seq.transcriptome.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.transcriptome.gdc_realn.bam 13180705491 BAM transcriptome harmonized CPTAC3 b2b7e424-05c2-407a-824d-6d98d3800e66 9c0dafbaf76391d57d788a43bd0884b2 {"aliquot_tag": "ALQ_bf0dc0e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.Targeted.T C3L-01054 PDA Targeted_Sequencing tumor CPT0123990009_1 CPT0123990009_1.CustomSelection.RP-1303.PDO-18786.bam 4683548101 BAM submitted_aligned CPTAC3 f399b246-a8e2-4edb-8d82-a3213d724941 91462903ddebd6e11e9fa3eadb6a9f76 {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.Targeted.T.hg38 C3L-01054 PDA Targeted_Sequencing tumor CPT0123990009_1 41d322a3-5478-4793-a2a7-3886912a57d6_targetedsequencing_gdc_realn.bam 6739467167 BAM harmonized CPTAC3 2d005188-75b0-4c53-8c13-33a2897f2d79 86b613e9d0f2435a09759ee12fcbb8b0 {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.WGS.A C3L-01054 PDA WGS tissue_normal CPT0124000006 CPT0124000006.WholeGenome.RP-1303.bam 63331231363 BAM submitted_aligned CPTAC3 fcb2c7f7-f991-456c-aa87-37839a124dae 44a020b9ed5ef2f5b64a1d45295f5bbe {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01054.WGS.A.hg38 C3L-01054 PDA WGS tissue_normal CPT0124000006 b9ae1ee8-2851-4628-8472-5788b6c984fd_wgs_gdc_realn.bam 92529719915 BAM harmonized CPTAC3 d07d850e-1e9b-40eb-9344-cd148eedfb72 f1a1e0953ddf4f4e21059dc78a64d692 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01054.WGS.N C3L-01054 PDA WGS blood_normal CPT0124920002 CPT0124920002.WholeGenome.RP-1303.bam 60710219730 BAM submitted_aligned CPTAC3 1000a332-1897-4be5-9df5-1058b3a0fe3f 200770c5f80514ee0c0dad62035540e4 {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01054.WGS.N.hg38 C3L-01054 PDA WGS blood_normal CPT0124920002 093123f9-294f-44b6-92ed-fc06a8acffc2_wgs_gdc_realn.bam 86957468038 BAM harmonized CPTAC3 bef0622e-0a80-4466-bc58-35e3b51a7185 1977a54d8fc7400b47035b2315485c0d {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01054.WGS.T C3L-01054 PDA WGS tumor CPT0123990009 CPT0123990009.WholeGenome.RP-1303.bam 62208757838 BAM submitted_aligned CPTAC3 fd096248-3b6d-45fa-815a-b6a6c5f0177b 239349c5bb152225feb9fdc84326bbd0 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.WGS.T.hg38 C3L-01054 PDA WGS tumor CPT0123990009 7cb00551-b12e-4311-ab3d-fc4e0d6f02ad_wgs_gdc_realn.bam 90983712726 BAM harmonized CPTAC3 62ffb2c8-68c0-40dd-b44e-4e2c48b291c8 2bee08b8476eb0dbfa32b05fe3d84002 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.WXS.A C3L-01054 PDA WXS tissue_normal CPT0124000006 CPT0124000006.WholeExome.RP-1303.bam 23082463206 BAM submitted_aligned CPTAC3 58b96586-298b-4f82-a4ea-40e2daff7c6b 933198db42741e47eaedae46b0860eb3 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01054.WXS.A.hg38 C3L-01054 PDA WXS tissue_normal CPT0124000006 b9ae1ee8-2851-4628-8472-5788b6c984fd_wxs_gdc_realn.bam 32407544699 BAM harmonized CPTAC3 b1a3b05d-d6c7-4bd3-a123-4b472f21011b 64f60f8e070c8f52ede10e7a893981d6 {"aliquot_tag": "ALQ_50b5cdd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01054.WXS.N C3L-01054 PDA WXS blood_normal CPT0124920002 CPT0124920002.WholeExome.RP-1303.bam 37885385596 BAM submitted_aligned CPTAC3 77ee8be7-5602-4bcd-94bb-21f2ae8e5905 1c4296a53621aff9e05cf416875e42be {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01054.WXS.N.hg38 C3L-01054 PDA WXS blood_normal CPT0124920002 093123f9-294f-44b6-92ed-fc06a8acffc2_wxs_gdc_realn.bam 51342868848 BAM harmonized CPTAC3 810aa2a0-d3ea-4914-9cbb-752f6610e6d8 4459178d28736d877efa53e5acefc98f {"aliquot_tag": "ALQ_a170b64", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01054.WXS.T C3L-01054 PDA WXS tumor CPT0123990009_1 CPT0123990009_1.WholeExome.RP-1303.bam 49746838948 BAM submitted_aligned CPTAC3 8b3a6ebb-4462-447a-a3e6-6551d16f3335 fb7f3417708ad18a99aae7a44a32ec03 {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.WXS.T C3L-01054 PDA WXS tumor CPT0123990009 CPT0123990009.WholeExome.RP-1303.bam 22316046973 BAM submitted_aligned CPTAC3 321c9829-e693-4ffc-a517-48b95a0d4c3b fdd2568eccceadbc2ca45beeedb673d4 {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.WXS.T.hg38 C3L-01054 PDA WXS tumor CPT0123990009_1 41d322a3-5478-4793-a2a7-3886912a57d6_wxs_gdc_realn.bam 68367699957 BAM harmonized CPTAC3 d5c9f374-feb0-417d-a149-a5e5a4bcc6bd e811257a061676df51002df01d4ffa3d {"aliquot_tag": "ALQ_d154f8b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01054.WXS.T.hg38 C3L-01054 PDA WXS tumor CPT0123990009 7cb00551-b12e-4311-ab3d-fc4e0d6f02ad_wxs_gdc_realn.bam 30837311936 BAM harmonized CPTAC3 583d6f3b-97ce-44d5-94f3-8348a7cfe64f 6c85b7dce4a7747a10a1f764193d008d {"aliquot_tag": "ALQ_2fb2dd73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.MethArray.Green.T C3L-01061 GBM Methylation_Array tumor CPT0217710011 203219640068_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0a61b7ca-f718-449c-ac47-cb9d701168f9 7c2416ba0baf239d7ca9d313e7490d01 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.MethArray.Red.T C3L-01061 GBM Methylation_Array tumor CPT0217710011 203219640068_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 927ff2a1-01cd-45b5-98d4-ac80bcb07417 bd26c303e2b602de4223746f1c58647a {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.miRNA-Seq.S24_L008_R1.T C3L-01061 GBM miRNA-Seq tumor CPT0217710014 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L008_R1_001.unaln.bam 334003471 BAM S24_L008_R1 submitted_unaligned CPTAC3 fde4a079-68f5-432d-affc-1e280fe18aad 161b10d476680f21f7ad40ff2b337c81 {"aliquot_tag": "ALQ_12fa50b", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.miRNA-Seq.T.hg38 C3L-01061 GBM miRNA-Seq tumor CPT0217710014 096fc590-7c82-45a9-96f2-a5d1dbe37560_mirnaseq_gdc_realn.bam 381318696 BAM harmonized CPTAC3 9103f978-63c6-493a-b31f-ded6a6dfd383 1432cdebcdf3bed1464c6d91eee69d32 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.RNA-Seq.chimeric.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.chimeric.gdc_realn.bam 35738517 BAM chimeric harmonized CPTAC3 a8592d49-58bf-4320-90a7-458d0bc5b935 198df90d61c569abe72653df72404705 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.RNA-Seq.genomic.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.genomic.gdc_realn.bam 8748684141 BAM genomic harmonized CPTAC3 70bbd906-338d-4e91-ab88-318a4c4870e3 63c741ccb0dbc6b7a89b3fdca8576ca5 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.RNA-Seq.S10_L007_R1.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R1_001.fastq.gz 3999682712 FASTQ S10_L007_R1 submitted_unaligned CPTAC3 ffb5df03-6c34-4b8f-90cb-eb3acb1f5c5e 1da0a5547bfcd230367c2d65eab19005 {"aliquot_tag": "ALQ_12fa50b", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.RNA-Seq.S10_L007_R2.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R2_001.fastq.gz 4169173074 FASTQ S10_L007_R2 submitted_unaligned CPTAC3 b6dd7a62-bb7b-4b6d-b9c8-f4058ce4609e 333748ef344708ab090aec0ea16f11ae {"aliquot_tag": "ALQ_12fa50b", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.RNA-Seq.transcriptome.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.transcriptome.gdc_realn.bam 10506971302 BAM transcriptome harmonized CPTAC3 c4c2db40-0310-4908-8876-b7debce75ae6 2b18985e7c15e89a358dcb91f2bfd9d0 {"aliquot_tag": "ALQ_12fa50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.WGS.N C3L-01061 GBM WGS blood_normal CPT0220160002 CPT0220160002.WholeGenome.RP-1303.bam 63410960366 BAM submitted_aligned CPTAC3 d8b8c72d-2e59-4139-9746-21a256a8b688 61fdf1def52a7151bca9aa591abda5e0 {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01061.WGS.N.hg38 C3L-01061 GBM WGS blood_normal CPT0220160002 a33bef57-71c4-434e-8a4c-24b1ed593dd1_wgs_gdc_realn.bam 90566363330 BAM harmonized CPTAC3 5920915c-87e0-407e-a422-02d3f8803b68 0f9575294f2bffe621085626b90c3a11 {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01061.WGS.T C3L-01061 GBM WGS tumor CPT0217710011 CPT0217710011.WholeGenome.RP-1303.bam 63493272955 BAM submitted_aligned CPTAC3 e3a4cb2c-5618-442e-8b73-59784ec10c40 877a2793195ffbdd9c781cfe469e5c91 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.WGS.T.hg38 C3L-01061 GBM WGS tumor CPT0217710011 dff6198d-3541-426b-b894-d26b18d87c23_wgs_gdc_realn.bam 91897409662 BAM harmonized CPTAC3 c9ba1998-cf81-4dc5-afcc-a42c8dc3ab1f e38fd1db374c63ba4169e0d83ff7daa4 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.WXS.N C3L-01061 GBM WXS blood_normal CPT0220160002 CPT0220160002.WholeExome.RP-1303.bam 25898528106 BAM submitted_aligned CPTAC3 deff7591-9409-4f60-9f27-4ddd763fc8a8 3dee6542633120270af32372e4dba07f {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01061.WXS.N.hg38 C3L-01061 GBM WXS blood_normal CPT0220160002 a33bef57-71c4-434e-8a4c-24b1ed593dd1_wxs_gdc_realn.bam 35226033324 BAM harmonized CPTAC3 9b3f0c7a-b5b0-4a5c-b40e-303d858ed6a6 0dd8b4e03f99e59104965424ec149a35 {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01061.WXS.T C3L-01061 GBM WXS tumor CPT0217710011 CPT0217710011.WholeExome.RP-1303.bam 29621741414 BAM submitted_aligned CPTAC3 cb28d084-86fb-40f1-91e8-f7db9e0e7fe0 63c48def84921d989f8ef65f5befd9ed {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01061.WXS.T.hg38 C3L-01061 GBM WXS tumor CPT0217710011 dff6198d-3541-426b-b894-d26b18d87c23_wxs_gdc_realn.bam 41045036469 BAM harmonized CPTAC3 dc60f5d5-fa33-4c3a-87b3-11225a35871f e7b66def080d57f285cf968d428d6fc3 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01064.MethArray.Green.T C3L-01064 UCEC Methylation_Array tumor CPT0113430010 203219670147_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3b1735a5-8976-4fd5-a76d-6bab9d764a88 23e3079cd6fac67e96e012c76cdd90c5 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.MethArray.Red.T C3L-01064 UCEC Methylation_Array tumor CPT0113430010 203219670147_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 1bcb2750-06d0-4b20-b9ba-135877abc877 45bd52288486e8f805c4661c007e4abd {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.miRNA-Seq.S22_L002_R1.T C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L002_R1_001.unaln.bam 264217578 BAM S22_L002_R1 submitted_unaligned CPTAC3 05a6be11-eb40-49fb-9115-826064a9a5a6 e451c65b34491d3ac145d728ae990dfa {"aliquot_tag": "ALQ_b0abfce8", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.miRNA-Seq.T.hg38 C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 ff0aaa9f-d2ce-412c-b63b-d54b8e12183f_mirnaseq_gdc_realn.bam 282572116 BAM harmonized CPTAC3 8ac3cc6e-3457-48cb-a7d4-df087e11c418 576d3acaf0f270caecafa8e620f0c39e {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.chimeric.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.chimeric.gdc_realn.bam 29571147 BAM chimeric harmonized CPTAC3 37a514c4-2cdb-44ce-9004-f09ff8d27ef3 7b49232e1094321450ce489b3603bbcd {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.chimeric.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.chimeric.gdc_realn.bam 302057748 BAM chimeric harmonized CPTAC3 527e2753-cd42-4b1a-95a6-559db32f4393 5bf539154e45077f6d3cd6e70f102e82 {"aliquot_tag": "ALQ_96671a3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.genomic.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.genomic.gdc_realn.bam 9201880615 BAM genomic harmonized CPTAC3 156bb8a8-0c9d-4d7d-8dac-d5c2f0932603 7f817b6b25d14f1be0fd94ee65b4ac29 {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.genomic.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.genomic.gdc_realn.bam 10877720163 BAM genomic harmonized CPTAC3 f1766caf-a5a6-417a-a4e7-fdf6ad21a1bd ba8f84309af5411c5aa22c79e71e454a {"aliquot_tag": "ALQ_96671a3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.S18_L005_R1.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3922335259 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 28100153-4171-4e1e-91d2-b0ad0baef05c 5d2a22eff38f2e1ea65e1498ef3538f2 {"aliquot_tag": "ALQ_b0abfce8", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.S18_L005_R2.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4254448836 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 66b69b3d-3ab0-4b3f-834d-4413c1321080 5d42b0b30ef0631cdf4ffb66dcd56ab6 {"aliquot_tag": "ALQ_b0abfce8", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.S44_R1.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R1_001.fastq.gz 6098681542 FASTQ S44_R1 submitted_unaligned CPTAC3 37632942-0a23-4d71-95cb-eabc0462d5b9 bb84c8d0357b2c23cdd88f6666cc404c {"aliquot_tag": "ALQ_96671a3e", "sample": "S44", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.S44_R2.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R2_001.fastq.gz 6297394584 FASTQ S44_R2 submitted_unaligned CPTAC3 93e373e6-d716-4957-bb10-f4c9fb53a2f0 b44d81e584514293d1d4390b4796615f {"aliquot_tag": "ALQ_96671a3e", "sample": "S44", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.transcriptome.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.transcriptome.gdc_realn.bam 11062682128 BAM transcriptome harmonized CPTAC3 b0f3890e-03db-46c0-a227-559cea486ee4 ff0190488a935fa00a06ff87bafab542 {"aliquot_tag": "ALQ_b0abfce8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.RNA-Seq.transcriptome.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.transcriptome.gdc_realn.bam 4527275225 BAM transcriptome harmonized CPTAC3 6d1f29c6-bda1-417b-a401-38e900cc5c00 b32da0182a1843673dd79e20e32a4559 {"aliquot_tag": "ALQ_96671a3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.WGS.N C3L-01064 UCEC WGS blood_normal CPT0114370002 CPT0114370002.WholeGenome.RP-1303.bam 55958152470 BAM submitted_aligned CPTAC3 6c503586-a88c-47d0-8741-d069acda8628 01b5c2494b48378538814bf2f0611583 {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01064.WGS.N.hg38 C3L-01064 UCEC WGS blood_normal CPT0114370002 81727297-3a76-417c-8eef-b40e0a9619eb_wgs_gdc_realn.bam 80325381252 BAM harmonized CPTAC3 fdc4ca59-46ac-4d19-a43a-6221686dba54 0c1e578f2af968f8d0b6e891cf5cdd27 {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01064.WGS.T C3L-01064 UCEC WGS tumor CPT0113430010 CPT0113430010.WholeGenome.RP-1303.bam 55036132160 BAM submitted_aligned CPTAC3 a6846445-701e-4826-a4d3-54792334d242 c46aedba383deffb9eedb39bac0b0534 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.WGS.T.hg38 C3L-01064 UCEC WGS tumor CPT0113430010 b8c569be-3c89-4eaa-9ce6-f138f3911575_wgs_gdc_realn.bam 81509794862 BAM harmonized CPTAC3 0bb4b939-4ae9-4d85-86f2-fe4ce24a87a1 158601e57882be7547519537fb586903 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.WXS.N C3L-01064 UCEC WXS blood_normal CPT0114370002 CPT0114370002.WholeExome.RP-1303.bam 26836680696 BAM submitted_aligned CPTAC3 25054e38-b8d9-45a9-866d-d92bd1b90441 c0d030ca3b57f6dc6226dd6e2ec85a95 {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01064.WXS.N.hg38 C3L-01064 UCEC WXS blood_normal CPT0114370002 81727297-3a76-417c-8eef-b40e0a9619eb_wxs_gdc_realn.bam 37167933603 BAM harmonized CPTAC3 6a5233c5-c3a7-4563-82d6-52c4baef5f7c aa0d0def1aecd88a502e411f3a2b2d0d {"aliquot_tag": "ALQ_ede3a091", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01064.WXS.T C3L-01064 UCEC WXS tumor CPT0113430010 CPT0113430010.WholeExome.RP-1303.bam 27749172225 BAM submitted_aligned CPTAC3 4aad2b8e-3460-4380-ba5a-4366fa2702b7 d24469216f94a0c7fafc154a134d3169 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01064.WXS.T.hg38 C3L-01064 UCEC WXS tumor CPT0113430010 b8c569be-3c89-4eaa-9ce6-f138f3911575_wxs_gdc_realn.bam 37537407858 BAM harmonized CPTAC3 e910a927-98d9-4cb1-b6cc-f84522711509 91dabb34f35cfb50c82a01b6bcf3d0af {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01102.MethArray.Green.A C3L-01102 CCRCC Methylation_Array tissue_normal CPT0124090006 204373100109_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 95aea250-3842-42fd-8bcb-06fc35e6c320 d655748ea48dbb907ad13822c209a888 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.MethArray.Green.T C3L-01102 CCRCC Methylation_Array tumor CPT0124070007 203219760074_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 5d2d4660-6cd2-4cfd-9be8-2b1de73e6209 2ee9196fa0227c164b55df8d4d96a0a4 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.MethArray.Red.A C3L-01102 CCRCC Methylation_Array tissue_normal CPT0124090006 204373100109_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 bc955f13-d2ed-4aeb-a6c6-864f5a8f4974 50a948de4c511275e7fb1dc95abeed1f {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.MethArray.Red.T C3L-01102 CCRCC Methylation_Array tumor CPT0124070007 203219760074_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 38e83df9-e283-4f61-a580-f3f6eb493196 f214f2119dbbe417d1fcdcd965f94916 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.miRNA-Seq.A.hg38 C3L-01102 CCRCC miRNA-Seq tissue_normal CPT0124090012 bb0d457c-1c6d-41be-a228-deddeef11a82_mirnaseq_gdc_realn.bam 290050846 BAM harmonized CPTAC3 eea389f1-bfa5-4243-9a56-2a2982e19fec ca803c116c9f0b446f85c343fd0ceac6 {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.miRNA-Seq.S11_L004_R1.A C3L-01102 CCRCC miRNA-Seq tissue_normal CPT0124090012 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L004_R1_001.unaln.bam 266871954 BAM S11_L004_R1 submitted_unaligned CPTAC3 c92e92ee-605b-46d2-b7f0-20f569171bcd 5c2a39f3a9de86574416ad46f24b6a2f {"aliquot_tag": "ALQ_43d35afc", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.miRNA-Seq.S37_L003_R1.T C3L-01102 CCRCC miRNA-Seq tumor CPT0124070010 190108_UNC31-K00269_0176_AHYGLVBBXX_CGGAAT_S37_L003_R1_001.unaln.bam 313437565 BAM S37_L003_R1 submitted_unaligned CPTAC3 8dae7e2f-446b-4da1-b004-1af5f887e64e cf8a35db06f8746f7608e24ec6511b3d {"aliquot_tag": "ALQ_12ed85b1", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.miRNA-Seq.T.hg38 C3L-01102 CCRCC miRNA-Seq tumor CPT0124070010 d2027cde-2dcb-4c5b-9614-35edbd6dc5e1_mirnaseq_gdc_realn.bam 346493685 BAM harmonized CPTAC3 5f06abfc-6744-4614-bea9-53d035e8c8be 007bf775ef9b35ff83db00fd7c7b6df0 {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.RNA-Seq.chimeric.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.chimeric.gdc_realn.bam 36986673 BAM chimeric harmonized CPTAC3 8a17c6b8-540a-40ac-b7c6-51a8a51cfcfb e67cb50fd3152599200447bb85f8a5df {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.RNA-Seq.chimeric.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.chimeric.gdc_realn.bam 31998066 BAM chimeric harmonized CPTAC3 f4578bdc-7e5c-4a33-9b8a-47a4fd8f2144 0a20d570593a773b557fa871294fee98 {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.RNA-Seq.genomic.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.genomic.gdc_realn.bam 8715175503 BAM genomic harmonized CPTAC3 8b6e137b-d0ff-4fd3-87c5-f903c58135ea 5eb15b5be9c90fd930b0698811948583 {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.RNA-Seq.genomic.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.genomic.gdc_realn.bam 9563355114 BAM genomic harmonized CPTAC3 7f954625-cdac-402e-a356-a59b43fffc49 112ad668a756857e0464568f768e5a9f {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.RNA-Seq.S2_L001_R1.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3977448493 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 15c6d436-2531-4144-ad44-2d9cea6f4cfb ec4a053e2f5fea2fe0fb4cb63a4f0be1 {"aliquot_tag": "ALQ_43d35afc", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.RNA-Seq.S2_L001_R2.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4267594053 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 3928a34d-4197-4ab2-8070-59aa0efaa5c6 711f734e2aac3a968933a0af700ce73f {"aliquot_tag": "ALQ_43d35afc", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.RNA-Seq.S3_L001_R1.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R1_001.fastq.gz 4114621517 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5bab197d-6934-4b22-9e53-ccb4a5ac7f9c c60dda1109d94d38c77aec101af37109 {"aliquot_tag": "ALQ_12ed85b1", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.RNA-Seq.S3_L001_R2.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R2_001.fastq.gz 4436265795 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 ce713796-8952-4fb0-a57b-fb24597957d8 9ac83ee47093fd3103191f552a62a21d {"aliquot_tag": "ALQ_12ed85b1", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.RNA-Seq.transcriptome.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.transcriptome.gdc_realn.bam 10909384897 BAM transcriptome harmonized CPTAC3 2378848c-e766-4c48-baab-e85a8a27f112 0c5631a283ded16e2c74a4b0533bd557 {"aliquot_tag": "ALQ_43d35afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.RNA-Seq.transcriptome.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.transcriptome.gdc_realn.bam 10697134943 BAM transcriptome harmonized CPTAC3 01223823-0396-4a60-86ef-18a18ba24473 95b1201c1fa970c54d99878f0335954a {"aliquot_tag": "ALQ_12ed85b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.WGS.A C3L-01102 CCRCC WGS tissue_normal CPT0124090006 CPT0124090006.WholeGenome.RP-1303.bam 64575505733 BAM submitted_aligned CPTAC3 647894e1-c594-478b-8e26-9b7cafa182a4 cce30a87dd9d543630c1a7b7f9b84009 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.WGS.A.hg38 C3L-01102 CCRCC WGS tissue_normal CPT0124090006 924bf40d-ea3b-4aa8-8197-a3a373492211_wgs_gdc_realn.bam 94064630023 BAM harmonized CPTAC3 0b5bdcfa-a0dc-4027-9e8a-245800a46269 485f8507fc4874f2ee0601c27237d9d5 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.WGS.N C3L-01102 CCRCC WGS blood_normal CPT0124930002 CPT0124930002.WholeGenome.RP-1303.bam 52285725912 BAM submitted_aligned CPTAC3 7d6e38d1-493f-4391-a730-2a86d99d958d 14a5b852036e418d8d603499da714672 {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01102.WGS.N.hg38 C3L-01102 CCRCC WGS blood_normal CPT0124930002 035720c2-a7a8-4fec-a799-784a70e924ae_wgs_gdc_realn.bam 76438304870 BAM harmonized CPTAC3 09fb2c63-e242-4811-8647-7f4f62bef48b 57acb12b6c1906e066256c2eb114565f {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01102.WGS.T C3L-01102 CCRCC WGS tumor CPT0124070007 CPT0124070007.WholeGenome.RP-1303.bam 57779417416 BAM submitted_aligned CPTAC3 8b3dbf08-4ff0-4a57-8077-5c6357cbf99a f03d07e86cc319eeb06c2b6d4743582b {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.WGS.T.hg38 C3L-01102 CCRCC WGS tumor CPT0124070007 ea5ca229-570f-447b-8d68-2ae9e3de0d06_wgs_gdc_realn.bam 84021409865 BAM harmonized CPTAC3 3ce412b1-8223-4389-8041-06f1f9d90ab2 7bab6b3bcc85e9ed80312d98d587a4a8 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.WXS.A C3L-01102 CCRCC WXS tissue_normal CPT0124090006 CPT0124090006.WholeExome.RP-1303.bam 24657536376 BAM submitted_aligned CPTAC3 139dd574-8c22-4dd7-8ae2-ea1deeb12e70 5c35a5bbbb6c25d085c8013aa3e2d9f2 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.WXS.A.hg38 C3L-01102 CCRCC WXS tissue_normal CPT0124090006 924bf40d-ea3b-4aa8-8197-a3a373492211_wxs_gdc_realn.bam 33226501637 BAM harmonized CPTAC3 eea1cebe-edfd-4804-8fc3-997fe5566719 ca455b086e71f793303d4de9a67af073 {"aliquot_tag": "ALQ_5da5afa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01102.WXS.N C3L-01102 CCRCC WXS blood_normal CPT0124930002 CPT0124930002.WholeExome.RP-1303.bam 23869199451 BAM submitted_aligned CPTAC3 f9a04005-faa6-4222-93b2-6ed47e35bc1a e5166e0aec51e1b3ce2d5046dea25e2e {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01102.WXS.N.hg38 C3L-01102 CCRCC WXS blood_normal CPT0124930002 035720c2-a7a8-4fec-a799-784a70e924ae_wxs_gdc_realn.bam 33860362410 BAM harmonized CPTAC3 03ee1d44-01b4-4905-83bc-0f086c838bd0 9c801e277a58577350aad228ab8aa117 {"aliquot_tag": "ALQ_377722d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01102.WXS.T C3L-01102 CCRCC WXS tumor CPT0124070007 CPT0124070007.WholeExome.RP-1303.bam 31181342398 BAM submitted_aligned CPTAC3 0a24710e-8204-4fb9-aba9-3084a1381490 41aabb5cd81ff2c3d83cc0dbac297d39 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01102.WXS.T.hg38 C3L-01102 CCRCC WXS tumor CPT0124070007 ea5ca229-570f-447b-8d68-2ae9e3de0d06_wxs_gdc_realn.bam 43159555100 BAM harmonized CPTAC3 515c81d5-b85d-4666-b713-f247d2e22182 f2cd4c11a8bdd82489f7b9c78919df86 {"aliquot_tag": "ALQ_95922153", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.MethArray.Green.A C3L-01106 CCRCC Methylation_Array tissue_normal CPT0127560006 204930640023_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a0a60f23-0f34-4c62-b040-09bf39dd0993 4f38b419ccf531b21079f7613284431c {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.MethArray.Green.T C3L-01106 CCRCC Methylation_Array tumor CPT0127540007 203219670106_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 4bee1a1b-36fb-4b3e-84a5-f04867f38240 26109848902818842b084fdc853d0fa0 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.MethArray.Red.A C3L-01106 CCRCC Methylation_Array tissue_normal CPT0127560006 204930640023_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 3f8142ba-623d-4a6c-acc3-6943f8de56ae e90b9f00439bc19ad4566e420a6813f9 {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.MethArray.Red.T C3L-01106 CCRCC Methylation_Array tumor CPT0127540007 203219670106_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 be063999-36ee-4ef2-9948-2d791528039c 740fc898db02bd22b4075e360b8468da {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.miRNA-Seq.A.hg38 C3L-01106 CCRCC miRNA-Seq tissue_normal CPT0127560009 e6f73fe8-adf7-4ea1-a3c5-1e3cee8758f9_mirnaseq_gdc_realn.bam 309292566 BAM harmonized CPTAC3 81732bf0-44c2-4be3-ae2f-53d254c0c3ea a3d764bbd90c3d46d259f1d4310a321f {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.miRNA-Seq.S18_L004_R1.T C3L-01106 CCRCC miRNA-Seq tumor CPT0127540010 190108_UNC31-K00269_0176_AHYGLVBBXX_GTCCGC_S18_L004_R1_001.unaln.bam 211791575 BAM S18_L004_R1 submitted_unaligned CPTAC3 100cdc4f-4148-4f16-bcc1-d18b1c256fa1 3555e524b5ca404327bf96c3d16007e9 {"aliquot_tag": "ALQ_3468744f", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.miRNA-Seq.S8_L002_R1.A C3L-01106 CCRCC miRNA-Seq tissue_normal CPT0127560009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L002_R1_001.unaln.bam 284398114 BAM S8_L002_R1 submitted_unaligned CPTAC3 789ea562-16cc-4b7e-97bd-8a6b851146fb e07a8de36c86dc74c75ed389a9bf9b6c {"aliquot_tag": "ALQ_2e6faeca", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.miRNA-Seq.T.hg38 C3L-01106 CCRCC miRNA-Seq tumor CPT0127540010 9ae51e96-97ba-4091-a19a-1f4b6a409753_mirnaseq_gdc_realn.bam 229601716 BAM harmonized CPTAC3 c0d79f69-a4c3-4548-9271-23f49a89dbeb 56ad7f5ea224f8c858b7889f2ed10378 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.RNA-Seq.chimeric.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.chimeric.gdc_realn.bam 242326235 BAM chimeric harmonized CPTAC3 e259ae29-f95f-4154-8824-05ccdf8ead9e 4f623bc38f41d6bbb93caa88c7361560 {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.RNA-Seq.chimeric.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.chimeric.gdc_realn.bam 149274133 BAM chimeric harmonized CPTAC3 5bbe0022-c4b4-4b34-968c-b28051503c7f 901b38d24bc5b421c076ab655ff177c3 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.RNA-Seq.genomic.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.genomic.gdc_realn.bam 8753843433 BAM genomic harmonized CPTAC3 d4a845d5-cd90-4bdf-80c0-6b6c9cdc20dc efc246265482f0d6e07c0657d96757f2 {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.RNA-Seq.genomic.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.genomic.gdc_realn.bam 8970359014 BAM genomic harmonized CPTAC3 257fe451-6068-4690-a269-877ddc9fa67c fb8f4b4e6576b1de4f1dfe7264dc4002 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.RNA-Seq.S14_L005_R1.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R1_001.fastq.gz 3719343077 FASTQ S14_L005_R1 submitted_unaligned CPTAC3 87d37919-909f-4599-8b5a-fa783c56971e c39a6288b1128abfd597319e8ba21e9a {"aliquot_tag": "ALQ_3468744f", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.RNA-Seq.S14_L005_R2.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R2_001.fastq.gz 3839056192 FASTQ S14_L005_R2 submitted_unaligned CPTAC3 466ffb31-b95e-47d9-b0b8-a4dfbfe0ed51 77142614cb9c7bba97b233ac937cac16 {"aliquot_tag": "ALQ_3468744f", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.RNA-Seq.S8_L004_R1.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R1_001.fastq.gz 3645256312 FASTQ S8_L004_R1 submitted_unaligned CPTAC3 1f45622f-4621-4a65-a293-39d333d45578 114e174595490dac74ffd12cc27b8a62 {"aliquot_tag": "ALQ_2e6faeca", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.RNA-Seq.S8_L004_R2.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R2_001.fastq.gz 4142286117 FASTQ S8_L004_R2 submitted_unaligned CPTAC3 6142a971-a49e-4090-a077-a8e5d34727a6 443332cfdaf02b01b9f6e266b55171e9 {"aliquot_tag": "ALQ_2e6faeca", "sample": "S8", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.RNA-Seq.transcriptome.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.transcriptome.gdc_realn.bam 9510027754 BAM transcriptome harmonized CPTAC3 5663bb71-a5a7-45af-bf65-b15fce4b9e78 08d449ca473d807d706cfb87bcc6088a {"aliquot_tag": "ALQ_2e6faeca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.RNA-Seq.transcriptome.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.transcriptome.gdc_realn.bam 10102732524 BAM transcriptome harmonized CPTAC3 5f741bab-2c68-47c0-a871-ba5e4e50046a f6c7b3a2c1673b4b2f25c82d9aba9528 {"aliquot_tag": "ALQ_3468744f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.WGS.A C3L-01106 CCRCC WGS tissue_normal CPT0127560006 CPT0127560006.WholeGenome.RP-1303.bam 63750521126 BAM submitted_aligned CPTAC3 0629d538-5b82-4639-9b77-e6e581fea8a9 cd0d9187de5f645a00120b3183967629 {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.WGS.A.hg38 C3L-01106 CCRCC WGS tissue_normal CPT0127560006 86515b8e-a388-4458-9ffd-0029a990e22c_wgs_gdc_realn.bam 92913603357 BAM harmonized CPTAC3 a53a8442-903b-4713-895f-9063244469ad 5779d8ea7ea55bcb2546e09f502999ae {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.WGS.N C3L-01106 CCRCC WGS blood_normal CPT0128590002 CPT0128590002.WholeGenome.RP-1303.bam 100045212935 BAM submitted_aligned CPTAC3 c6d37ac1-316c-45db-aad5-c344e23aa741 d53c93eec2b85ce852ed95b12b13281b {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01106.WGS.N.hg38 C3L-01106 CCRCC WGS blood_normal CPT0128590002 e4a3dd00-3c13-495b-9e94-6557df14332b_wgs_gdc_realn.bam 146274454410 BAM harmonized CPTAC3 9b40e1fc-b8be-4345-a743-91a94b641537 b1853043d6f15945a377e2ec4a7af4ec {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01106.WGS.T C3L-01106 CCRCC WGS tumor CPT0127540007 CPT0127540007.WholeGenome.RP-1303.bam 55709090478 BAM submitted_aligned CPTAC3 e576cdf8-06bb-434a-834a-ddaf068d56d3 add9a9c6055ec182c0ce7ea196c96b36 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.WGS.T.hg38 C3L-01106 CCRCC WGS tumor CPT0127540007 35453c5b-636f-40d1-841d-8dcc50a0e539_wgs_gdc_realn.bam 82044190208 BAM harmonized CPTAC3 82e51d4e-22ce-4f4d-95cb-56ef38885ad2 575852f67676a475b9d750572054f019 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.WXS.A C3L-01106 CCRCC WXS tissue_normal CPT0127560006 CPT0127560006.WholeExome.RP-1303.bam 19706807132 BAM submitted_aligned CPTAC3 40f3cabd-eaba-45d8-b83d-e8ae5775afe4 e98cd70aaac965daf4efeab1bc6069dc {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.WXS.A.hg38 C3L-01106 CCRCC WXS tissue_normal CPT0127560006 86515b8e-a388-4458-9ffd-0029a990e22c_wxs_gdc_realn.bam 27896632428 BAM harmonized CPTAC3 37e6dfc4-351d-4d78-942b-718fc7d6ef9c 5d5a269b79f72ff129aab58505899a6f {"aliquot_tag": "ALQ_bed0b35b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01106.WXS.N C3L-01106 CCRCC WXS blood_normal CPT0128590002 CPT0128590002.WholeExome.RP-1303.bam 23525731420 BAM submitted_aligned CPTAC3 32798656-2a8f-447f-956b-2a3a92abe4ba e2aa0476106e7b606952b5422e68eb10 {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01106.WXS.N.hg38 C3L-01106 CCRCC WXS blood_normal CPT0128590002 e4a3dd00-3c13-495b-9e94-6557df14332b_wxs_gdc_realn.bam 32362030026 BAM harmonized CPTAC3 71de9483-4c90-4f22-b6ea-e8b168d60e2a 5cd68d5f8adea43e5e11f4187df185e1 {"aliquot_tag": "ALQ_cda5907a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01106.WXS.T C3L-01106 CCRCC WXS tumor CPT0127540007 CPT0127540007.WholeExome.RP-1303.bam 24872901312 BAM submitted_aligned CPTAC3 c0c30237-d1f7-49aa-af81-a09ccec5c0ba 9926be2b339263433274f3c304c669a5 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01106.WXS.T.hg38 C3L-01106 CCRCC WXS tumor CPT0127540007 35453c5b-636f-40d1-841d-8dcc50a0e539_wxs_gdc_realn.bam 34710626657 BAM harmonized CPTAC3 1e8e590d-84be-4297-adfc-ef68aefbc6b6 57e130912b431ddcfdac46b49d855020 {"aliquot_tag": "ALQ_b317d0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.MethArray.Green.A C3L-01107 CCRCC Methylation_Array tissue_normal CPT0128220006 204930640061_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 aa7f9e40-2be2-448d-bc21-039b0e159f38 5a64e1f9deb62b96090be3f170428dc8 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.MethArray.Green.T C3L-01107 CCRCC Methylation_Array tumor CPT0128200006 203219720176_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1007ea1e-7bff-4029-9e33-1d5b1c6718e4 a8fd322ea68e152eadd78f68505eede2 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.MethArray.Red.A C3L-01107 CCRCC Methylation_Array tissue_normal CPT0128220006 204930640061_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 93d604ca-cc24-4e5d-8cbd-451c06a27968 d6386253cd34fc3102d9e8c21b2d9134 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.MethArray.Red.T C3L-01107 CCRCC Methylation_Array tumor CPT0128200006 203219720176_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 04203123-b27f-4c7f-ab1d-08fc1c829c3b 76d1f45b3b051de73bc5040e4d5c70d2 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.miRNA-Seq.A.hg38 C3L-01107 CCRCC miRNA-Seq tissue_normal CPT0128220009 b7e341b4-3318-4ebd-a8c6-689d7bef03c4_mirnaseq_gdc_realn.bam 224872362 BAM harmonized CPTAC3 d79a6ea7-8091-4dac-976d-a379f6838984 353e6f3319b1632a79c314a5efbd08e2 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.miRNA-Seq.S19_L004_R1.T C3L-01107 CCRCC miRNA-Seq tumor CPT0128200009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGAAA_S19_L004_R1_001.unaln.bam 299467308 BAM S19_L004_R1 submitted_unaligned CPTAC3 edd94b7d-368c-4ff5-9dc8-28fd14b2e2f6 8d59ef71f5efdd4038dfaac4933ba4bb {"aliquot_tag": "ALQ_4a621b3b", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.miRNA-Seq.S9_L002_R1.A C3L-01107 CCRCC miRNA-Seq tissue_normal CPT0128220009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L002_R1_001.unaln.bam 201318306 BAM S9_L002_R1 submitted_unaligned CPTAC3 651c73fc-a310-4b62-98d6-7391da4a44aa 3ef43052b2ede85cc3e2e6d705841fa1 {"aliquot_tag": "ALQ_30a2485b", "sample": "S9", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.miRNA-Seq.T.hg38 C3L-01107 CCRCC miRNA-Seq tumor CPT0128200009 bf6f1cc2-d9d6-4476-8e44-57bc52f22fb6_mirnaseq_gdc_realn.bam 327583224 BAM harmonized CPTAC3 d610852e-9f88-4501-9c93-b907d829b59d 488aeddbcbe6666ff37635264e0d4cf5 {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.RNA-Seq.chimeric.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.chimeric.gdc_realn.bam 178455688 BAM chimeric harmonized CPTAC3 0660560e-60e4-4a2e-8da8-9ea4adabde17 91bff53ab8bfa3914efcda89b7b1bfd3 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.RNA-Seq.chimeric.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.chimeric.gdc_realn.bam 299457948 BAM chimeric harmonized CPTAC3 a85f52c8-d02d-4f3e-9b86-1bb6a693722f 3a7af14b56ee5b803decc574dae4abca {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.RNA-Seq.genomic.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.genomic.gdc_realn.bam 9556818666 BAM genomic harmonized CPTAC3 31880cb7-f309-4803-8bfd-70e46e9a64f9 21c08546c54f3ce908203692c604a1b2 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.RNA-Seq.genomic.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.genomic.gdc_realn.bam 9795322559 BAM genomic harmonized CPTAC3 1e24632e-0a4e-48a8-8e1b-713a0f10f022 8a63fecdf3bb409f7045a4d513e08166 {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.RNA-Seq.S16_L005_R1.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R1_001.fastq.gz 4285834213 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 32bb4c82-91e8-486a-aef8-abc7dba1ead8 166a102e34b7b04ff78666b1cb7d9418 {"aliquot_tag": "ALQ_4a621b3b", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.RNA-Seq.S16_L005_R2.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R2_001.fastq.gz 4794507671 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 fe116b10-f7df-46ac-8bc5-6d74f714a258 e3703894aa8f09856ca27fbd654b1b91 {"aliquot_tag": "ALQ_4a621b3b", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.RNA-Seq.S7_L004_R1.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R1_001.fastq.gz 4056775217 FASTQ S7_L004_R1 submitted_unaligned CPTAC3 f3dc1ccc-d860-4956-9913-ffe18bb92a04 1fbb996178e9a011d2a82c5dd1c3476f {"aliquot_tag": "ALQ_30a2485b", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.RNA-Seq.S7_L004_R2.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R2_001.fastq.gz 4406269700 FASTQ S7_L004_R2 submitted_unaligned CPTAC3 20f6261f-79e8-44ad-8b11-38fafb6099c0 5894100c33d5006a4abd7e52b9c26a1a {"aliquot_tag": "ALQ_30a2485b", "sample": "S7", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.RNA-Seq.transcriptome.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.transcriptome.gdc_realn.bam 9714805768 BAM transcriptome harmonized CPTAC3 d933f4a8-fea7-48bc-88c4-624200cf703d d3558c5449502eeb46ea760007e139d5 {"aliquot_tag": "ALQ_30a2485b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.RNA-Seq.transcriptome.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.transcriptome.gdc_realn.bam 9653012184 BAM transcriptome harmonized CPTAC3 f877c0d2-8cee-4c9f-b55d-a43c5c194f18 8369ce524113993d56ad01d579a2a41d {"aliquot_tag": "ALQ_4a621b3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.WGS.A C3L-01107 CCRCC WGS tissue_normal CPT0128220006 CPT0128220006.WholeGenome.RP-1303.bam 57950576185 BAM submitted_aligned CPTAC3 0ac806f4-7541-4a2e-a997-0a8c013c956e c09605546f14800b17c09c3ae450a33a {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.WGS.A.hg38 C3L-01107 CCRCC WGS tissue_normal CPT0128220006 9484c82f-51d6-4a28-91ed-c2cddd51d56f_wgs_gdc_realn.bam 83482721157 BAM harmonized CPTAC3 bea0d5f9-81dc-4ceb-a1ba-de66a4592802 4d5d07f61f80716a2a87160e5b8cf1ed {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.WGS.N C3L-01107 CCRCC WGS blood_normal CPT0128600002 CPT0128600002.WholeGenome.RP-1303.bam 59861252316 BAM submitted_aligned CPTAC3 e7c83446-9419-4ab6-a3ad-a90d0f66dab8 6ce8062d5d7bd46ca0cbe28d42b34bf0 {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01107.WGS.N.hg38 C3L-01107 CCRCC WGS blood_normal CPT0128600002 870dca40-6bd2-474b-95d6-4a101ccb79b5_wgs_gdc_realn.bam 84860624551 BAM harmonized CPTAC3 13b2f0f1-40e8-4315-b453-8a092d20a850 47af80ce5740d40f826cab2c5e875db0 {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01107.WGS.T C3L-01107 CCRCC WGS tumor CPT0128200006 CPT0128200006.WholeGenome.RP-1303.bam 92836706292 BAM submitted_aligned CPTAC3 ced7609a-58b8-4939-91b2-1ebe91ba340d 94b1175837f22ab50d5bdd30c0b50561 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.WGS.T.hg38 C3L-01107 CCRCC WGS tumor CPT0128200006 8567dad7-eaef-4b7b-b098-5997eb5939df_wgs_gdc_realn.bam 134622575575 BAM harmonized CPTAC3 7263cc94-ae08-470b-88c5-f0714352622a 1649da5c397533eb4335322711b81cf5 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.WXS.A C3L-01107 CCRCC WXS tissue_normal CPT0128220006 CPT0128220006.WholeExome.RP-1303.bam 15904175109 BAM submitted_aligned CPTAC3 24648a4c-36b7-45f8-a97f-583a4e0717cb f21b1d8ded2ead4f121aff1254a7d4d6 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.WXS.A.hg38 C3L-01107 CCRCC WXS tissue_normal CPT0128220006 9484c82f-51d6-4a28-91ed-c2cddd51d56f_wxs_gdc_realn.bam 22269794026 BAM harmonized CPTAC3 d04959f7-9e82-468f-b283-1e3b8d296be6 9a0d2f14d37c9fbdc6c61b12f50affe5 {"aliquot_tag": "ALQ_a01d55ca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01107.WXS.N C3L-01107 CCRCC WXS blood_normal CPT0128600002 CPT0128600002.WholeExome.RP-1303.bam 28276859478 BAM submitted_aligned CPTAC3 cec90ac5-7aa4-40b6-a882-764469f62abe 5c891948ecfcc1d2f82514263ca6ec1d {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01107.WXS.N.hg38 C3L-01107 CCRCC WXS blood_normal CPT0128600002 870dca40-6bd2-474b-95d6-4a101ccb79b5_wxs_gdc_realn.bam 38398606235 BAM harmonized CPTAC3 d17ede88-086b-4361-a8d6-ac04a0bda13b 5bd6e0a41b8fce172907460ab9b648a7 {"aliquot_tag": "ALQ_462180a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01107.WXS.T C3L-01107 CCRCC WXS tumor CPT0128200006 CPT0128200006.WholeExome.RP-1303.bam 21901878891 BAM submitted_aligned CPTAC3 dff09d53-27f1-414d-ab91-a1c7c08a6cca f339ac718700dc8a1dbbf52919dfc9b0 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01107.WXS.T.hg38 C3L-01107 CCRCC WXS tumor CPT0128200006 8567dad7-eaef-4b7b-b098-5997eb5939df_wxs_gdc_realn.bam 30218005264 BAM harmonized CPTAC3 32740adf-4629-4837-a6e7-4fa3e1280546 7193c00a9363f057cbcd07e7daa3d9a2 {"aliquot_tag": "ALQ_dadd06aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.MethArray.Green.A C3L-01124 PDA Methylation_Array tissue_normal CPT0218220007 203561450054_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7c7487e7-afb2-4569-ae21-62fafe23e69b 67ab7102764898f4cb491e69fdf862e6 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01124.MethArray.Red.A C3L-01124 PDA Methylation_Array tissue_normal CPT0218220007 203561450054_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 76f868e2-7e25-43da-9780-966481f95482 65f50c02c7f84bcca22f03e128f15f09 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01124.miRNA-Seq.S11_L004_R1.T C3L-01124 PDA miRNA-Seq tumor CPT0218200010 190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L004_R1_001.unaln.bam 237728064 BAM S11_L004_R1 submitted_unaligned CPTAC3 083f9e15-2e46-464c-a823-e0ee4801319b 9c922e952b0b7a19ca6252a12eb1f127 {"aliquot_tag": "ALQ_9da7a9f8", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.miRNA-Seq.T.hg38 C3L-01124 PDA miRNA-Seq tumor CPT0218200010 9e9a91c6-6afb-41e2-856a-b8da7f41b36d_mirnaseq_gdc_realn.bam 268526312 BAM harmonized CPTAC3 6dec9110-8399-4520-b914-92abe16c6c99 9a60e1e985a376777b0c9bc80d198e8b {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.RNA-Seq.chimeric.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.chimeric.gdc_realn.bam 30521533 BAM chimeric harmonized CPTAC3 f898eec7-152d-4fcf-8a0c-88ae631ce6ea bccb472ba13bda56a5c24eb77a647ee9 {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.RNA-Seq.genomic.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.genomic.gdc_realn.bam 7761088890 BAM genomic harmonized CPTAC3 4703d5af-4821-4cf4-a0a1-e475d1075f84 e98efd43d1ad8972257d6e08d8fedc72 {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.RNA-Seq.S4_L001_R1.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3634837869 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 34e81818-13cd-4293-8928-7b2ccf25029e f30cd0593ca08a1bb79312a919c99385 {"aliquot_tag": "ALQ_9da7a9f8", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.RNA-Seq.S4_L001_R2.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 3980733627 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 96f94f29-ca45-4603-98e8-22d9374e57c7 b40d8e58dadd51b51df3d67c5d4b1e70 {"aliquot_tag": "ALQ_9da7a9f8", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.RNA-Seq.transcriptome.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.transcriptome.gdc_realn.bam 9465846694 BAM transcriptome harmonized CPTAC3 81f74fa9-b630-4803-a0fa-1b7645958820 d1c1aa84083583abf425806af5dbe2a6 {"aliquot_tag": "ALQ_9da7a9f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.WGS.N C3L-01124 PDA WGS blood_normal CPT0220240002 CPT0220240002.WholeGenome.RP-1303.bam 66538715820 BAM submitted_aligned CPTAC3 b81ac938-96bc-4ef4-b90c-c79c20ab61dc d541cd218b80e5cd840b0c78dda5f4b5 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01124.WGS.N.hg38 C3L-01124 PDA WGS blood_normal CPT0220240002 8b168954-0caa-4c8b-8c1f-0521f4da89ec_wgs_gdc_realn.bam 95701406517 BAM harmonized CPTAC3 1fbe8af1-8b73-4ad2-99eb-43fb406d4331 1413e11fcb3546698ec8fda545457868 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01124.WGS.T C3L-01124 PDA WGS tumor CPT0218200007 CPT0218200007.WholeGenome.RP-1303.bam 59452997748 BAM submitted_aligned CPTAC3 e82ed373-4668-400c-ab79-3dbfa4d5c48e 3d1b6162f7aabedd70bc3181ecd11d6f {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.WGS.T.hg38 C3L-01124 PDA WGS tumor CPT0218200007 41359c2a-31d1-41b7-8c7e-226fdd046c56_wgs_gdc_realn.bam 88498045827 BAM harmonized CPTAC3 256a810d-17cb-428d-b864-94539732f0ef 91d4eaed0a40fd1d17e5e5710d8f9f33 {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.WXS.A C3L-01124 PDA WXS tissue_normal CPT0218220007 CPT0218220007.WholeExome.RP-1303.bam 16673780926 BAM submitted_aligned CPTAC3 618b173a-2d88-435d-b334-96df1c547da5 d88aafc611fa8bf39db98c11adac8a49 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01124.WXS.A.hg38 C3L-01124 PDA WXS tissue_normal CPT0218220007 1560960d-b1c2-4d40-8c2f-1158d80cb958_wxs_gdc_realn.bam 22666139296 BAM harmonized CPTAC3 96f75467-42da-4f1a-97ea-e91be4c2a5df 167aa98da762b9bcbf12fbb55fcc0689 {"aliquot_tag": "ALQ_60185e7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01124.WXS.N C3L-01124 PDA WXS blood_normal CPT0220240002 CPT0220240002.WholeExome.RP-1303.bam 29856336671 BAM submitted_aligned CPTAC3 155c6a65-d2f7-44c2-9f3d-e0e58692c80b ac8c15bb4218de513355b5aabc1ea7a7 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01124.WXS.N.hg38 C3L-01124 PDA WXS blood_normal CPT0220240002 8b168954-0caa-4c8b-8c1f-0521f4da89ec_wxs_gdc_realn.bam 41450362710 BAM harmonized CPTAC3 9b7144fa-d001-41bd-a5b1-c5e70f281cdf e308719c7e7602e0bdf0d2a7f6469895 {"aliquot_tag": "ALQ_225216d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01124.WXS.T C3L-01124 PDA WXS tumor CPT0218200007 CPT0218200007.WholeExome.RP-1303.bam 24367837733 BAM submitted_aligned CPTAC3 ad86dbd0-abbe-47df-adce-a3a1a00f6437 8c6dbf8a84f2feeef9c28e1ecff3c2ef {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01124.WXS.T.hg38 C3L-01124 PDA WXS tumor CPT0218200007 41359c2a-31d1-41b7-8c7e-226fdd046c56_wxs_gdc_realn.bam 33847621746 BAM harmonized CPTAC3 56c79b6e-5551-49c8-b767-04dd7a30d08a f1a903fa82fc74bac5a7afca4a686ffd {"aliquot_tag": "ALQ_1ad80d1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.MethArray.Green.A C3L-01138 HNSCC Methylation_Array tissue_normal CPT0199710006 203273200080_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 29fd5fa6-e314-4ba7-9b96-5cb5a014b13a 5955bee82bd786d84c849677f848362e {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.MethArray.Green.T C3L-01138 HNSCC Methylation_Array tumor CPT0199700006 203271750047_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 49e300f2-6285-49fe-847f-cabc805965e4 52a830aa8c75b76559d99da0dcf4aee1 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.MethArray.Red.A C3L-01138 HNSCC Methylation_Array tissue_normal CPT0199710006 203273200080_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 1ff5feaf-8ee4-4dbf-b454-f4c0b5a48eac c5ae4d1097e613f2a039c24d392d5455 {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.MethArray.Red.T C3L-01138 HNSCC Methylation_Array tumor CPT0199700006 203271750047_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 90d3af24-57a8-4034-9b82-fdfceddfb93f 28a0900b8280ffd80c1c68f5079e7568 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.miRNA-Seq.A.hg38 C3L-01138 HNSCC miRNA-Seq tissue_normal CPT0199710009 5f03f58e-b9dd-4896-aa98-d2302331711c_mirnaseq_gdc_realn.bam 200017582 BAM harmonized CPTAC3 9928cac7-ad76-4906-94f4-a960a459bdc8 59a574f4fad7d2d505f024dacf8d65fa {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.miRNA-Seq.S13_L003_R1.A C3L-01138 HNSCC miRNA-Seq tissue_normal CPT0199710009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L003_R1_001.unaln.bam 180600074 BAM S13_L003_R1 submitted_unaligned CPTAC3 0c8b12a6-2386-47c5-9712-dfed3a6b04b1 7d7bb37122a2a75b86a40924eddf0080 {"aliquot_tag": "ALQ_dcd2b4da", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.miRNA-Seq.S4_L003_R1.T C3L-01138 HNSCC miRNA-Seq tumor CPT0199700009 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L003_R1_001.unaln.bam 273191804 BAM S4_L003_R1 submitted_unaligned CPTAC3 34933fdd-e314-4e9b-98a4-84917ac5f252 eb46998fbb5c8b85d3b5c16694a53c77 {"aliquot_tag": "ALQ_e1b29d6a", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.miRNA-Seq.T.hg38 C3L-01138 HNSCC miRNA-Seq tumor CPT0199700009 c5e57c44-c650-466a-a82f-e42445cfd4c0_mirnaseq_gdc_realn.bam 319207444 BAM harmonized CPTAC3 d41b9b5f-973f-4a69-abff-147e4c719703 4cee68c414676cc995faf8795a9fab01 {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.chimeric.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.chimeric.gdc_realn.bam 175019185 BAM chimeric harmonized CPTAC3 50e3f844-0234-4b28-b16b-13178fd6336f a538d8d08a410f5c2af439029ad447c0 {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.RNA-Seq.chimeric.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.chimeric.gdc_realn.bam 364114353 BAM chimeric harmonized CPTAC3 e7f4aaa7-e8b2-49ab-943f-64566063607a 2e2881fb7a4d3f7a8440ad1fb2735e82 {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.chimeric.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.chimeric.gdc_realn.bam 54851581 BAM chimeric harmonized CPTAC3 09743d32-814c-4199-a7ef-c9377929d734 e0e1cbd42b38fffe9ce7b5471827c7c0 {"aliquot_tag": "ALQ_8cb27779", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.genomic.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.genomic.gdc_realn.bam 8212393467 BAM genomic harmonized CPTAC3 7e69c9b6-049c-4d7a-8484-ed180d891b1e 33584fb87768ac36f54688a676c38709 {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.RNA-Seq.genomic.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.genomic.gdc_realn.bam 9048925675 BAM genomic harmonized CPTAC3 80a66e75-5568-40d0-a2e1-18af7c74029b 44766b3bc7a377f272e17b0417267d4e {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.genomic.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.genomic.gdc_realn.bam 6264169674 BAM genomic harmonized CPTAC3 96734a75-38a3-4ee8-8c8d-1f76fa126096 f14b112d4d45a1a95eccc59578db1e60 {"aliquot_tag": "ALQ_8cb27779", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.S10_R1.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R1_001.fastq.gz 3262539991 FASTQ S10_R1 submitted_unaligned CPTAC3 7ac9df57-5261-4e4d-97d0-f89ebe26e2bc 727dfae420e8bef9a73295f6dbba4740 {"aliquot_tag": "ALQ_8cb27779", "sample": "S10", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.S10_R2.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R2_001.fastq.gz 3525874971 FASTQ S10_R2 submitted_unaligned CPTAC3 44574794-ab0a-4ff0-b924-2e211433a67e a704da6730f1d1d68de240a690b92cbb {"aliquot_tag": "ALQ_8cb27779", "sample": "S10", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.S2_L007_R1.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R1_001.fastq.gz 3671894922 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 7385e76e-77e3-42c8-bffa-6512ac6f1c7f e2b1df6b8b388012fc49ca7f2972f9c8 {"aliquot_tag": "ALQ_dcd2b4da", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.RNA-Seq.S2_L007_R2.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R2_001.fastq.gz 4034713163 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 274a4d30-85cd-45be-a44a-92b9bbad39e4 24ef7e84f816653a899756e2d6cd2149 {"aliquot_tag": "ALQ_dcd2b4da", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.RNA-Seq.S5_L002_R1.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R1_001.fastq.gz 4269875054 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 87b6c3bd-006e-4541-8788-e6fe36fb4bc0 9e46cfefd601e26d91016c1d87b8a49d {"aliquot_tag": "ALQ_e1b29d6a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.S5_L002_R2.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R2_001.fastq.gz 4674041813 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 f88801c9-0c9b-4504-8766-7fb28da9af70 94e855fce1170ccef102b33f749782c4 {"aliquot_tag": "ALQ_e1b29d6a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.transcriptome.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.transcriptome.gdc_realn.bam 9978171313 BAM transcriptome harmonized CPTAC3 df8bdf5c-4048-4978-9bd0-41b451a3e739 06f39c400304f24ce45594928677c2df {"aliquot_tag": "ALQ_dcd2b4da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.RNA-Seq.transcriptome.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.transcriptome.gdc_realn.bam 11425020060 BAM transcriptome harmonized CPTAC3 c2698e12-de0f-426a-9efa-6eee95660f39 2154bfa4f33ad95f0a339ff26dc474f6 {"aliquot_tag": "ALQ_e1b29d6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.RNA-Seq.transcriptome.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.transcriptome.gdc_realn.bam 3889752068 BAM transcriptome harmonized CPTAC3 b99b7bfe-86bd-470e-bcfd-2768a18fea06 3448565d0c3bc6593834815ab79ed36c {"aliquot_tag": "ALQ_8cb27779", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.WGS.N C3L-01138 HNSCC WGS blood_normal CPT0200380002 CPT0200380002.WholeGenome.RP-1303.bam 61869468074 BAM submitted_aligned CPTAC3 5b6736d9-5077-4616-99ec-ffbdfa828a1c 3d437144be6df81fdc6bc10bf3483356 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01138.WGS.N.hg38 C3L-01138 HNSCC WGS blood_normal CPT0200380002 90e939ef-35e2-4b4c-98a8-0f6e22d7e0dc_wgs_gdc_realn.bam 89572705207 BAM harmonized CPTAC3 56b144c0-61e4-4cf6-bce8-bc633c8a0a3c 6eee5b3720adfbc33728e0a987a81e27 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01138.WGS.T C3L-01138 HNSCC WGS tumor CPT0199700006 CPT0199700006.WholeGenome.RP-1303.bam 60823750266 BAM submitted_aligned CPTAC3 745955ab-97a7-421f-90a0-d7bd1441be61 e3d35d8f02b9cdc62471f359342f7889 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.WGS.T.hg38 C3L-01138 HNSCC WGS tumor CPT0199700006 52e9042a-995c-48e4-9642-470e44271aab_wgs_gdc_realn.bam 95079733142 BAM harmonized CPTAC3 701902a5-1c1d-464a-8d1e-ae612216d6a2 255205c6710a044e75d7fe536823dfbc {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.WXS.A C3L-01138 HNSCC WXS tissue_normal CPT0199710006 CPT0199710006.WholeExome.RP-1303.bam 21097786156 BAM submitted_aligned CPTAC3 5c429b30-e109-4574-8861-b499a5df0090 ed7739d0db9190d6ec4501c90ebb5923 {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.WXS.A.hg38 C3L-01138 HNSCC WXS tissue_normal CPT0199710006 345ca072-dab1-4991-9133-4435ef50ed04_wxs_gdc_realn.bam 28706687459 BAM harmonized CPTAC3 a5a2f64b-933b-49b8-92d8-ced442149456 b0107efdd35de6a45ebf4c97f47a3b00 {"aliquot_tag": "ALQ_4c6da94b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01138.WXS.N C3L-01138 HNSCC WXS blood_normal CPT0200380002 CPT0200380002.WholeExome.RP-1303.bam 24342075803 BAM submitted_aligned CPTAC3 70f26752-d0e9-404b-8047-f6b6f7b52a83 9134a35b68f4b82bccfa1c0ed4ad4dd1 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01138.WXS.N.hg38 C3L-01138 HNSCC WXS blood_normal CPT0200380002 90e939ef-35e2-4b4c-98a8-0f6e22d7e0dc_wxs_gdc_realn.bam 32909913703 BAM harmonized CPTAC3 de0941fa-7202-41bc-a95e-92575c7afd81 a92438e3ceaa82134266c4d512503401 {"aliquot_tag": "ALQ_6edb2f08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01138.WXS.T C3L-01138 HNSCC WXS tumor CPT0199700006 CPT0199700006.WholeExome.RP-1303.bam 22482975124 BAM submitted_aligned CPTAC3 2571bf6e-d1fa-494a-ba84-b2a8fe125027 f662c52d42110997d9f4e1a29c265511 {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01138.WXS.T.hg38 C3L-01138 HNSCC WXS tumor CPT0199700006 52e9042a-995c-48e4-9642-470e44271aab_wxs_gdc_realn.bam 31133128038 BAM harmonized CPTAC3 6313ed8e-0de5-4670-a5a0-ba169390009b 4c5af86daf081b0ba07af399318d73bd {"aliquot_tag": "ALQ_710d80fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.MethArray.Green.T C3L-01142 GBM Methylation_Array tumor CPT0218330007 203219650065_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 eb552352-37bf-488d-b9b2-a10ed1323b07 31807fecb4a32391ad236a784780aaa3 {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.MethArray.Red.T C3L-01142 GBM Methylation_Array tumor CPT0218330007 203219650065_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 68873253-43d2-434b-aa2a-7ab2bc165141 d78733ba26c8cc75db3a1be5f01e0398 {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.miRNA-Seq.S161_L008_R1.T C3L-01142 GBM miRNA-Seq tumor CPT0218330010 190828_UNC32-K00270_0200_BH7GVJBBXY_ACTGAT_S161_L008_R1_001.unaln.bam 349353716 BAM S161_L008_R1 submitted_unaligned CPTAC3 a63900ea-f195-4548-97f1-850b5d92ce5a 37cb68a049b8abce9b98ff2a3a13a9ac {"aliquot_tag": "ALQ_115b008d", "sample": "S161", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.miRNA-Seq.T.hg38 C3L-01142 GBM miRNA-Seq tumor CPT0218330010 9adba7d6-14f0-462c-a00c-7e7b5b1dbb95_mirnaseq_gdc_realn.bam 382838184 BAM harmonized CPTAC3 a0c7caa5-f562-42ad-aa27-a6f91756f27c 755bbe959ff2ec2392ba0a20068da487 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.RNA-Seq.chimeric.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.chimeric.gdc_realn.bam 41795427 BAM chimeric harmonized CPTAC3 50a2f654-a2fd-4e92-820e-66f41a7ff96b 6c8c9e2a8493bf645ca17c4028973a40 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.RNA-Seq.genomic.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.genomic.gdc_realn.bam 9076364435 BAM genomic harmonized CPTAC3 1e9a6446-8dad-4efd-8641-7e56a007a11c 3a60bf9277ff74de1b1da0513782ade4 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.RNA-Seq.S12_L007_R1.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R1_001.fastq.gz 3877177502 FASTQ S12_L007_R1 submitted_unaligned CPTAC3 715d946d-0833-4686-b27c-4328f177eb3a 72e71f6fafe8aeb6dc2bd68f17ad84a0 {"aliquot_tag": "ALQ_115b008d", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.RNA-Seq.S12_L007_R2.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R2_001.fastq.gz 3984707975 FASTQ S12_L007_R2 submitted_unaligned CPTAC3 4d99975d-30c1-4664-b97e-5fc047d1e034 0b7ff7ae791bd42dc14e245cea13a260 {"aliquot_tag": "ALQ_115b008d", "sample": "S12", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.RNA-Seq.transcriptome.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.transcriptome.gdc_realn.bam 9702009127 BAM transcriptome harmonized CPTAC3 505951df-f743-40e1-bcee-e5931893923c 1e0c93e6c644322263d32891485b8675 {"aliquot_tag": "ALQ_115b008d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.WGS.N C3L-01142 GBM WGS blood_normal CPT0220250002 CPT0220250002.WholeGenome.RP-1303.bam 55787583476 BAM submitted_aligned CPTAC3 7263c993-9921-4057-ab49-fc22479b3e39 3176ca815514ef507d12a64055965974 {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01142.WGS.N.hg38 C3L-01142 GBM WGS blood_normal CPT0220250002 25d298e0-e9cb-4417-967b-e12bd47aed51_wgs_gdc_realn.bam 80145635598 BAM harmonized CPTAC3 3d8c241d-0d89-43e9-b612-0b8ebd6f56d8 6efa5b17715c71720150d84ac7f03281 {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01142.WGS.T C3L-01142 GBM WGS tumor CPT0218330007 CPT0218330007.WholeGenome.RP-1303.bam 56569499517 BAM submitted_aligned CPTAC3 4ca24cd2-23ea-4fad-8a60-22f64db04e2b d6c53347235ea0e268c4e78effb48b8b {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.WGS.T.hg38 C3L-01142 GBM WGS tumor CPT0218330007 89c5f9a8-85a9-4834-8bd6-6d1150e76f5a_wgs_gdc_realn.bam 84862166502 BAM harmonized CPTAC3 f7b6229b-8f20-4369-b1f0-6f776c32066b 407ea5d74d96c1e91c13e63d69affdf4 {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.WXS.N C3L-01142 GBM WXS blood_normal CPT0220250002 CPT0220250002.WholeExome.RP-1303.bam 23494813684 BAM submitted_aligned CPTAC3 b5bb57ce-b8a7-4e9f-9232-5b4276e2996a d29640e3d19546b9de780053e84bd0ca {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01142.WXS.N.hg38 C3L-01142 GBM WXS blood_normal CPT0220250002 25d298e0-e9cb-4417-967b-e12bd47aed51_wxs_gdc_realn.bam 31812849426 BAM harmonized CPTAC3 9c589f2d-4f6d-4a78-88a4-76b158d267ff 04f2290e0ac0f0c4cdd63694ca5891f1 {"aliquot_tag": "ALQ_1f323f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01142.WXS.T C3L-01142 GBM WXS tumor CPT0218330007 CPT0218330007.WholeExome.RP-1303.bam 22596567202 BAM submitted_aligned CPTAC3 a2233662-d93b-484c-a3de-16565c079245 802d4c531596054876276d7c0a782b7d {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01142.WXS.T.hg38 C3L-01142 GBM WXS tumor CPT0218330007 89c5f9a8-85a9-4834-8bd6-6d1150e76f5a_wxs_gdc_realn.bam 31249485287 BAM harmonized CPTAC3 bad9c1ce-9a47-4f48-9d8f-7e1bf288c96b 4eab9dc5c7fb8ab6bc1143564dc6a3fc {"aliquot_tag": "ALQ_9624a46f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.miRNA-Seq.S26_L008_R1.T C3L-01146 GBM miRNA-Seq tumor CPT0218690010 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L008_R1_001.unaln.bam 155751630 BAM S26_L008_R1 submitted_unaligned CPTAC3 b07808cc-ac0c-43b2-9f43-3a3032f32c8a b4163176b312cc72e433ad44ef28be26 {"aliquot_tag": "ALQ_b26899f", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.miRNA-Seq.T.hg38 C3L-01146 GBM miRNA-Seq tumor CPT0218690010 62a24bf2-715e-42b4-8738-7a7c3fe9da72_mirnaseq_gdc_realn.bam 180320865 BAM harmonized CPTAC3 9b19d6b4-2c06-4592-a201-f6189d715ae3 69f8242581f67f14bb40627fe735e9dd {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.RNA-Seq.chimeric.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.chimeric.gdc_realn.bam 33068431 BAM chimeric harmonized CPTAC3 7da0cf40-ae43-4cc0-95b5-27864fe0eb0c 9eb9d942ebf5213cafad694bc51078f2 {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.RNA-Seq.genomic.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.genomic.gdc_realn.bam 9296103786 BAM genomic harmonized CPTAC3 dece33e2-6f3b-4e7d-a1cc-35b0f412328c 0c85ca323d464e81ea551e3e0ad3e2b2 {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.RNA-Seq.S17_L008_R1.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R1_001.fastq.gz 3810099551 FASTQ S17_L008_R1 submitted_unaligned CPTAC3 7ee15def-b3f5-4f9f-876a-d5b5d58db477 3fe567036d72189bb6288d65bc76b492 {"aliquot_tag": "ALQ_b26899f", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.RNA-Seq.S17_L008_R2.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R2_001.fastq.gz 3989925929 FASTQ S17_L008_R2 submitted_unaligned CPTAC3 4c23a61a-de61-41ba-99e8-23400a3f9234 e1d60990962ad440c491a14a5652d57b {"aliquot_tag": "ALQ_b26899f", "sample": "S17", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.RNA-Seq.transcriptome.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.transcriptome.gdc_realn.bam 10846646271 BAM transcriptome harmonized CPTAC3 347bf7b8-f195-4505-aad0-60f16ca806aa 4dd7b7f585edb1b2c798bb43b57db833 {"aliquot_tag": "ALQ_b26899f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.WGS.N C3L-01146 GBM WGS blood_normal CPT0220330002 CPT0220330002.WholeGenome.RP-1303.bam 56384831654 BAM submitted_aligned CPTAC3 3c6b675e-92c2-45c4-9862-bc4ac9546252 425ad7bb0c9a2f73ba64fe3525a630de {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01146.WGS.N.hg38 C3L-01146 GBM WGS blood_normal CPT0220330002 222678a1-f4f8-4082-991a-ebd1f9181d29_wgs_gdc_realn.bam 80924153122 BAM harmonized CPTAC3 a48a7d58-0369-4a39-afaf-8eefb1a4fcfb edba4150e2fefb9d61d136700cf1f6d1 {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01146.WGS.T C3L-01146 GBM WGS tumor CPT0218690007 CPT0218690007.WholeGenome.RP-1303.bam 64115180365 BAM submitted_aligned CPTAC3 d044ac6e-83b9-4442-953a-6c14e8171c5c 22ebce54797da0165760bdc35ef2ca9a {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.WGS.T.hg38 C3L-01146 GBM WGS tumor CPT0218690007 613b02e9-7089-4a69-b2c4-cd5914dc1882_wgs_gdc_realn.bam 92341306186 BAM harmonized CPTAC3 880f6e26-7395-485f-92f9-0a0e6feea3be 4a1b858d842b84e022f231d9f2b16e26 {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.WXS.N C3L-01146 GBM WXS blood_normal CPT0220330002 CPT0220330002.WholeExome.RP-1303.bam 23907417802 BAM submitted_aligned CPTAC3 9a47bad9-ce3f-46ff-a351-cf38d6ca2ffd dc1267d0bd486a0eab326580fc82816b {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01146.WXS.N.hg38 C3L-01146 GBM WXS blood_normal CPT0220330002 222678a1-f4f8-4082-991a-ebd1f9181d29_wxs_gdc_realn.bam 32646232524 BAM harmonized CPTAC3 fb97e443-3b6c-4156-97e8-4f868101e43e 27d3f2d8bb00c512fa6f6fe4f5ea3ac8 {"aliquot_tag": "ALQ_5b2e1964", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01146.WXS.T C3L-01146 GBM WXS tumor CPT0218690007 CPT0218690007.WholeExome.RP-1303.bam 39434517183 BAM submitted_aligned CPTAC3 6851536b-8fcc-45cb-ba33-77c2d940c3af 013a1c1d5aba5579a5c636d6102fb99e {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01146.WXS.T.hg38 C3L-01146 GBM WXS tumor CPT0218690007 613b02e9-7089-4a69-b2c4-cd5914dc1882_wxs_gdc_realn.bam 54232476538 BAM harmonized CPTAC3 d575657c-bd3d-46d5-bdbb-24192c872bcb 3e5dfb153c37df7efa94eaecb017675f {"aliquot_tag": "ALQ_8c592d7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.MethArray.Green.T C3L-01149 GBM Methylation_Array tumor CPT0218770006 203219720203_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9581a906-6ce2-4f43-bdfa-3b2c347b4270 56712286143337f942835accf5a48f98 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.MethArray.Red.T C3L-01149 GBM Methylation_Array tumor CPT0218770006 203219720203_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 1a0bc888-438f-4319-8c9f-ce0fc4b1d2da 923d61c6ba24ffe36f0bc7ac7b469498 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.miRNA-Seq.S149_L008_R1.T C3L-01149 GBM miRNA-Seq tumor CPT0218770009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATTCCT_S149_L008_R1_001.unaln.bam 321003796 BAM S149_L008_R1 submitted_unaligned CPTAC3 41f3cc14-bb45-4bb7-af50-1ffbf2148458 6e27eb90f5f1c624c6b9040c59d37daa {"aliquot_tag": "ALQ_1f8d6dbe", "sample": "S149", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.miRNA-Seq.T.hg38 C3L-01149 GBM miRNA-Seq tumor CPT0218770009 809a4d7b-851b-4e75-a804-ea7f22491064_mirnaseq_gdc_realn.bam 365282860 BAM harmonized CPTAC3 0190e19a-11ed-46c2-a133-06de89fe8c32 34be33b317bbc8115dfa488e841b53f9 {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.RNA-Seq.chimeric.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.chimeric.gdc_realn.bam 38765553 BAM chimeric harmonized CPTAC3 795a75fe-009f-484b-8aa4-e3d6f808fada 62ddb49125ee746984cba86c69e7349a {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.RNA-Seq.genomic.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.genomic.gdc_realn.bam 8407495391 BAM genomic harmonized CPTAC3 4abbebf3-def3-46ff-ad15-d0a936e2a69d 6e648a30102c3f27333cac69ececa8e0 {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.RNA-Seq.S18_L008_R1.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R1_001.fastq.gz 3863346811 FASTQ S18_L008_R1 submitted_unaligned CPTAC3 0c930cce-77e8-4ebd-b0bd-bc7cfa4473be f72e1db3d8c26cb88fe11804fcdb1b29 {"aliquot_tag": "ALQ_1f8d6dbe", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.RNA-Seq.S18_L008_R2.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R2_001.fastq.gz 3971137906 FASTQ S18_L008_R2 submitted_unaligned CPTAC3 c28cab64-66d0-4d12-a7d3-d7005c4886ef 37263fea70dc1c8a7561b78b44de3170 {"aliquot_tag": "ALQ_1f8d6dbe", "sample": "S18", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.RNA-Seq.transcriptome.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.transcriptome.gdc_realn.bam 8479716847 BAM transcriptome harmonized CPTAC3 db261598-764d-4940-b0cf-bacb81de1210 3f7bc025e8a6ffdbe15960f4503ed668 {"aliquot_tag": "ALQ_1f8d6dbe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.WGS.N C3L-01149 GBM WGS blood_normal CPT0220350002 CPT0220350002.WholeGenome.RP-1303.bam 69210422044 BAM submitted_aligned CPTAC3 09a8205e-ea2b-4465-aa6f-747e5dcbf078 05d4b9d32ebeabffe1fbf7ce1234e409 {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01149.WGS.N.hg38 C3L-01149 GBM WGS blood_normal CPT0220350002 28c09c40-a98f-4641-af84-2405ce473f60_wgs_gdc_realn.bam 99593736756 BAM harmonized CPTAC3 9f432dfa-d7d8-4d94-a885-2a60769ebcc4 a6342af0a6ba0246b1eba3caa0cf6efd {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01149.WGS.T C3L-01149 GBM WGS tumor CPT0218770006 CPT0218770006.WholeGenome.RP-1303.bam 50872173628 BAM submitted_aligned CPTAC3 19aa4ef2-396a-4bf7-9f4a-83937de473cb 623d4c88a1a464b4cb9f754a122d14a9 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.WGS.T.hg38 C3L-01149 GBM WGS tumor CPT0218770006 30ae1a29-cd48-4ee5-81be-215510402651_wgs_gdc_realn.bam 74660152817 BAM harmonized CPTAC3 bbe70dd2-1790-40e6-b036-5088f864cea6 f5db38a66171e229e79f4092b3e6e01f {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.WXS.N C3L-01149 GBM WXS blood_normal CPT0220350002 CPT0220350002.WholeExome.RP-1303.bam 29203566040 BAM submitted_aligned CPTAC3 523337f3-bae4-4369-b1aa-bd18dfad6168 b10dbbb60406dbb00a22cf44a23782d2 {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01149.WXS.N.hg38 C3L-01149 GBM WXS blood_normal CPT0220350002 28c09c40-a98f-4641-af84-2405ce473f60_wxs_gdc_realn.bam 39911861543 BAM harmonized CPTAC3 736f213c-7fc6-49ac-811d-7e0a5d8e3b7b b7a7a8ee483521e806e0c94737199a90 {"aliquot_tag": "ALQ_d46eecc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01149.WXS.T C3L-01149 GBM WXS tumor CPT0218770006 CPT0218770006.WholeExome.RP-1303.bam 21953723039 BAM submitted_aligned CPTAC3 3035caa4-5ba7-446f-8a3e-d1d290e4ee4a 80b004712309f52dbef6e304bd1bdefc {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01149.WXS.T.hg38 C3L-01149 GBM WXS tumor CPT0218770006 30ae1a29-cd48-4ee5-81be-215510402651_wxs_gdc_realn.bam 30030929550 BAM harmonized CPTAC3 48348c7c-03b5-44fc-9877-a226d2a15102 284a579379e709a370cf2cb16c54b5b3 {"aliquot_tag": "ALQ_8f32702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.MethArray.Green.T C3L-01154 GBM Methylation_Array tumor CPT0218830007 203219650218_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a1c97f2b-4b8d-4915-be2f-152106b7d439 5c88ba605403346f112f6a483c2885af {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.MethArray.Red.T C3L-01154 GBM Methylation_Array tumor CPT0218830007 203219650218_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8b4e0d55-8d5c-4ccf-86c5-644b55e8cd69 237d4a5bc4e5dd100b4392120987d1e8 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.miRNA-Seq.S28_L008_R1.T C3L-01154 GBM miRNA-Seq tumor CPT0218830010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L008_R1_001.unaln.bam 199070786 BAM S28_L008_R1 submitted_unaligned CPTAC3 99885ab8-6dfb-422e-bd76-45f997ef5e4d 71e38aced63a2fe8c954b274a6d5a48f {"aliquot_tag": "ALQ_7b9cf04e", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.miRNA-Seq.T.hg38 C3L-01154 GBM miRNA-Seq tumor CPT0218830010 47cf00e8-baba-4301-b699-54e933962e88_mirnaseq_gdc_realn.bam 225908043 BAM harmonized CPTAC3 a8cb9240-cf12-4de4-8706-79c8dee51891 a8aa92ce324cf5a8e3ed4dbef578ce02 {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.RNA-Seq.chimeric.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.chimeric.gdc_realn.bam 36811277 BAM chimeric harmonized CPTAC3 51037884-0310-4419-9d36-dd2b2ee1623b bdfa81ffc351eaffc715e0142153fcba {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.RNA-Seq.genomic.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.genomic.gdc_realn.bam 8986583163 BAM genomic harmonized CPTAC3 034a07e2-2dfb-4c94-8c5a-7dcea3321e79 e08b8e4c8b1a351c84de2153d15e66a6 {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.RNA-Seq.S19_L008_R1.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R1_001.fastq.gz 4182412620 FASTQ S19_L008_R1 submitted_unaligned CPTAC3 60583fa7-45f0-40c0-97db-2d5320e7decf 3fdf3e2fa6428af994b30a5873b71216 {"aliquot_tag": "ALQ_7b9cf04e", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.RNA-Seq.S19_L008_R2.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R2_001.fastq.gz 4348545918 FASTQ S19_L008_R2 submitted_unaligned CPTAC3 5832bc32-dfa3-484e-b142-cfdf7230220d f28e8e869d805eca8d889ed587060dc2 {"aliquot_tag": "ALQ_7b9cf04e", "sample": "S19", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.RNA-Seq.transcriptome.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.transcriptome.gdc_realn.bam 11293531194 BAM transcriptome harmonized CPTAC3 279f022e-9e25-4132-b4cb-8492bce9f594 1b298ba0f1ee5e705a33f2ce91a6efc4 {"aliquot_tag": "ALQ_7b9cf04e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.WGS.N C3L-01154 GBM WGS blood_normal CPT0220370002 CPT0220370002.WholeGenome.RP-1303.bam 54192901483 BAM submitted_aligned CPTAC3 b7267ba6-8f3b-438d-a26a-509a259829a5 f20840127e097056f2b5ea429d518983 {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01154.WGS.N.hg38 C3L-01154 GBM WGS blood_normal CPT0220370002 c3419dee-0a62-41b8-934c-b713bc7f713b_wgs_gdc_realn.bam 77363570233 BAM harmonized CPTAC3 c073a2bc-7cd9-47f2-a35f-bc52103a704c c638ded3a0e33021ea861b7b199fcc23 {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01154.WGS.T C3L-01154 GBM WGS tumor CPT0218830007 CPT0218830007.WholeGenome.RP-1303.bam 65854263311 BAM submitted_aligned CPTAC3 49f75696-a836-4833-bf5c-8f8e3ac2f4c6 d92f81b6178f9b3b8874bcf4492341b4 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.WGS.T.hg38 C3L-01154 GBM WGS tumor CPT0218830007 484d1154-cec5-4f8d-8e15-9de7e69d5d22_wgs_gdc_realn.bam 96740046225 BAM harmonized CPTAC3 20c6e2a4-6efe-4671-81e6-f8d9e1b4d393 444a751217d2fe3754f13c760b29eebe {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.WXS.N C3L-01154 GBM WXS blood_normal CPT0220370002 CPT0220370002.WholeExome.RP-1303.bam 27568043796 BAM submitted_aligned CPTAC3 2277f162-dd70-41c4-971e-f2a07e4da2d2 c185b82d858c8bb9afa2d325a1402c3c {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01154.WXS.N.hg38 C3L-01154 GBM WXS blood_normal CPT0220370002 c3419dee-0a62-41b8-934c-b713bc7f713b_wxs_gdc_realn.bam 37553331517 BAM harmonized CPTAC3 bf78d24e-4513-4faf-8499-7428f295d217 70301c5bb188066f42a27e7f50584fa6 {"aliquot_tag": "ALQ_aeaebfa4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01154.WXS.T C3L-01154 GBM WXS tumor CPT0218830007 CPT0218830007.WholeExome.RP-1303.bam 30811232723 BAM submitted_aligned CPTAC3 897dae8d-bfee-41bf-8a11-f30a70e02333 7a729c74c45d9a980c4ba4f7340171c2 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01154.WXS.T.hg38 C3L-01154 GBM WXS tumor CPT0218830007 484d1154-cec5-4f8d-8e15-9de7e69d5d22_wxs_gdc_realn.bam 42581008063 BAM harmonized CPTAC3 f3ba5853-3a43-42a8-97c0-1fd821f5c8e7 434e149d6823a30c0132603fd21e25a1 {"aliquot_tag": "ALQ_fce354ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.MethArray.Green.T C3L-01155 GBM Methylation_Array tumor CPT0218890007 203028200100_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 e9a8f834-9b8e-4c98-a203-cb1a4bf46422 bf192615b5230d1eca4ccba0afffd536 {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.MethArray.Red.T C3L-01155 GBM Methylation_Array tumor CPT0218890007 203028200100_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 a1549404-5555-45fe-a6be-e6babf179014 68dd40c872d57e26b0ec3d82740e3b55 {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.miRNA-Seq.S29_L008_R1.T C3L-01155 GBM miRNA-Seq tumor CPT0218890010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L008_R1_001.unaln.bam 156401444 BAM S29_L008_R1 submitted_unaligned CPTAC3 36b26a13-5142-4de1-b985-235ddc0b93e3 08a85acc579f03d24b1e3fbbf30942ee {"aliquot_tag": "ALQ_312ce8ef", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.miRNA-Seq.T.hg38 C3L-01155 GBM miRNA-Seq tumor CPT0218890010 090b9b60-2c19-48a1-bce3-09650174e989_mirnaseq_gdc_realn.bam 179917307 BAM harmonized CPTAC3 a0a9d0af-d92b-4e92-b250-a6a636bd60ab 70edcc04989d3209da6c092161e25744 {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.RNA-Seq.chimeric.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.chimeric.gdc_realn.bam 30991552 BAM chimeric harmonized CPTAC3 6e65aec2-3f07-4f24-9cf1-0f08b236987f 7017fd65594747f398fdf690bd3d1fd7 {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.RNA-Seq.genomic.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.genomic.gdc_realn.bam 8068721698 BAM genomic harmonized CPTAC3 56b88a54-e69f-402d-9d71-81ab8e469f36 b5a18d738627d224e6c4606b6fd34aae {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.RNA-Seq.S20_L008_R1.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R1_001.fastq.gz 3502370250 FASTQ S20_L008_R1 submitted_unaligned CPTAC3 d71d8418-991d-4703-927e-878e1ea001f6 052b626e8053a49f2f6c554b5d2665d9 {"aliquot_tag": "ALQ_312ce8ef", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.RNA-Seq.S20_L008_R2.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R2_001.fastq.gz 3655076132 FASTQ S20_L008_R2 submitted_unaligned CPTAC3 e0720488-9d71-4fea-94a6-9cc46b89a41c 95e729570b607c411ce3733484530c09 {"aliquot_tag": "ALQ_312ce8ef", "sample": "S20", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.RNA-Seq.transcriptome.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.transcriptome.gdc_realn.bam 9189011863 BAM transcriptome harmonized CPTAC3 0bbf7ebf-c71a-47e6-953a-e066c3bc57cf 146a81d009400d6d3f344cb7d271858d {"aliquot_tag": "ALQ_312ce8ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.WGS.N C3L-01155 GBM WGS blood_normal CPT0220390002 CPT0220390002.WholeGenome.RP-1303.bam 56404646991 BAM submitted_aligned CPTAC3 20d670db-fa04-4af2-a354-c8dc2e617f57 4dca9c66aa4fd55fb6a62714da7e0693 {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01155.WGS.N.hg38 C3L-01155 GBM WGS blood_normal CPT0220390002 48de787e-f39f-4052-920f-45a36255ba7b_wgs_gdc_realn.bam 81369207898 BAM harmonized CPTAC3 c4bced1d-cb6c-4837-b4eb-dad1507de56a 899c4fecfaa86449234d5ea64755e986 {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01155.WGS.T C3L-01155 GBM WGS tumor CPT0218890007 CPT0218890007.WholeGenome.RP-1303.bam 58325560961 BAM submitted_aligned CPTAC3 707e72e0-9e98-415d-858f-2cd9e7f8a010 4dd90d2092acc540506b3d7e15ae4803 {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.WGS.T.hg38 C3L-01155 GBM WGS tumor CPT0218890007 5edb7cc0-ff25-4b38-b386-cb8815496b27_wgs_gdc_realn.bam 84867521223 BAM harmonized CPTAC3 896fec72-4491-44f1-b185-b216dcb77b5a 7ef9ec792974068b7c000bf85635ae3e {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.WXS.N C3L-01155 GBM WXS blood_normal CPT0220390002 CPT0220390002.WholeExome.RP-1303.bam 23280404211 BAM submitted_aligned CPTAC3 9ef2d5a1-b304-4dce-bf5a-99be7b42eb79 c3dc0aeb346701f88111dbb2d769f32c {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01155.WXS.N.hg38 C3L-01155 GBM WXS blood_normal CPT0220390002 48de787e-f39f-4052-920f-45a36255ba7b_wxs_gdc_realn.bam 31676628010 BAM harmonized CPTAC3 5d38a524-d69b-423d-a29c-a371940b7c9d 5a859bb7917450fdddb8adae723716ce {"aliquot_tag": "ALQ_119e01c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01155.WXS.T C3L-01155 GBM WXS tumor CPT0218890007 CPT0218890007.WholeExome.RP-1303.bam 25791767177 BAM submitted_aligned CPTAC3 4b3af174-d7f3-40a9-ac37-50fcb73c5a7b 4c42dd054f4dc4d32aab06ff4f9163eb {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01155.WXS.T.hg38 C3L-01155 GBM WXS tumor CPT0218890007 5edb7cc0-ff25-4b38-b386-cb8815496b27_wxs_gdc_realn.bam 35866522533 BAM harmonized CPTAC3 8add108d-632a-4914-8497-49eb33871f3c 57319f02ea797d2dfe3c95ca0325e1cd {"aliquot_tag": "ALQ_b6534c0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.MethArray.Green.T C3L-01156 GBM Methylation_Array tumor CPT0218960006 203219650217_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8df14385-ea6f-45e0-9254-e0ec676505e2 b911afbe18ff61f0ef9cf3037e7d5d2f {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.MethArray.Red.T C3L-01156 GBM Methylation_Array tumor CPT0218960006 203219650217_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5298b6a-ff43-4e79-9fa6-60d65b0e174d 46d47d684d69713551f31d664266de57 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.miRNA-Seq.S30_L008_R1.T C3L-01156 GBM miRNA-Seq tumor CPT0218960010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L008_R1_001.unaln.bam 199293552 BAM S30_L008_R1 submitted_unaligned CPTAC3 89a80b73-715e-4411-9e76-ab0f8068677c 036a985f07cbddae5b5888051288913f {"aliquot_tag": "ALQ_7820ac9b", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.miRNA-Seq.T.hg38 C3L-01156 GBM miRNA-Seq tumor CPT0218960010 8995e2de-85d8-41ac-be42-74c2dca76894_mirnaseq_gdc_realn.bam 226123858 BAM harmonized CPTAC3 a51a049a-baed-4a38-979f-9c89750522b7 e721112d98c8accc4d439b96e3edded1 {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.RNA-Seq.chimeric.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.chimeric.gdc_realn.bam 35379215 BAM chimeric harmonized CPTAC3 ed233da3-8575-4bd3-9119-09c1328e689a f921c0a42513f641c1dc6652273d8bfd {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.RNA-Seq.genomic.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.genomic.gdc_realn.bam 7883382580 BAM genomic harmonized CPTAC3 59578824-6d48-44eb-ade3-4e5255e01626 2aae05cd7744a9f62cbc6c7b02e64951 {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.RNA-Seq.S29_L008_R1.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R1_001.fastq.gz 3528330279 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 c8f2ee66-29ac-4764-aa67-7e2ecd91ce3a b313e3afbdfdf7f7583c173dd291cfd9 {"aliquot_tag": "ALQ_7820ac9b", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.RNA-Seq.S29_L008_R2.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R2_001.fastq.gz 3828609242 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 052af4e4-ac86-48ea-8da0-a47bc581918f 63819791cd1762b5061e6ebc471c5f78 {"aliquot_tag": "ALQ_7820ac9b", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.RNA-Seq.transcriptome.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.transcriptome.gdc_realn.bam 9327551476 BAM transcriptome harmonized CPTAC3 ef5bb1d1-43f9-4406-be71-b88ef1a154e7 aac5cfa0f4394e95a8b1e8bda6a00645 {"aliquot_tag": "ALQ_7820ac9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.WGS.N C3L-01156 GBM WGS blood_normal CPT0220410002 CPT0220410002.WholeGenome.RP-1303.bam 53662836231 BAM submitted_aligned CPTAC3 bbc10dd1-8fc4-4ad6-a0bc-aaf15a1fe21b a1702ae08bab6e483dacd0070add2891 {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01156.WGS.N.hg38 C3L-01156 GBM WGS blood_normal CPT0220410002 27f1a6ae-b936-4581-8779-c3fa551c1650_wgs_gdc_realn.bam 76810545077 BAM harmonized CPTAC3 f9c7d2a9-08af-4b2c-b473-cbd25a09e5d8 828730be71f1dc4c60218562f1493cb9 {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01156.WGS.T C3L-01156 GBM WGS tumor CPT0218960006 CPT0218960006.WholeGenome.RP-1303.bam 54646620934 BAM submitted_aligned CPTAC3 b4e5e78d-0515-493b-bfa1-07a4a0dfb7d4 00c65988723a8815a26fc93c56ef12d1 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.WGS.T.hg38 C3L-01156 GBM WGS tumor CPT0218960006 e098b073-e9cc-4344-a7b7-fe7cf5ecc7c3_wgs_gdc_realn.bam 78332236781 BAM harmonized CPTAC3 659dfe0f-91c9-4100-b133-c90d2658ed50 3b2be44e871cb5408eade072024343c5 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.WXS.N C3L-01156 GBM WXS blood_normal CPT0220410002 CPT0220410002.WholeExome.RP-1303.bam 25688978138 BAM submitted_aligned CPTAC3 9ed7bea2-2056-4944-bb33-069102c8b545 3314d6da2db3cab50d260bdae38a702d {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01156.WXS.N.hg38 C3L-01156 GBM WXS blood_normal CPT0220410002 27f1a6ae-b936-4581-8779-c3fa551c1650_wxs_gdc_realn.bam 35112087309 BAM harmonized CPTAC3 a01efd96-c5e2-443c-91d0-fe67c00d2b7e 1b905e1aedd5c871c8000bc0d3f3e4d8 {"aliquot_tag": "ALQ_3ceb7abc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01156.WXS.T C3L-01156 GBM WXS tumor CPT0218960006 CPT0218960006.WholeExome.RP-1303.bam 26758612392 BAM submitted_aligned CPTAC3 d25eadf2-462e-4fb4-a306-6b29d6147cbd 37e9c211311a5c8bffa388a08aa9f7e4 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01156.WXS.T.hg38 C3L-01156 GBM WXS tumor CPT0218960006 e098b073-e9cc-4344-a7b7-fe7cf5ecc7c3_wxs_gdc_realn.bam 37326398795 BAM harmonized CPTAC3 09665d61-6cc6-41b8-9612-e22a37ede079 3bf8617213c5e9fcecc7c3b003573844 {"aliquot_tag": "ALQ_885838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.MethArray.Green.T C3L-01157 GBM Methylation_Array tumor CPT0199770006 203219650164_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 32b90b79-a686-424a-aba7-33b9a5eba8d7 98f0589afa8268f76c94823ade110985 {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.MethArray.Red.T C3L-01157 GBM Methylation_Array tumor CPT0199770006 203219650164_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 194b1060-7838-4d55-8798-56c161fa3572 4d623b371e72d37693782ac2c2629b0d {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.miRNA-Seq.S38_L004_R1.T C3L-01157 GBM miRNA-Seq tumor CPT0199770009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTATAC_S38_L004_R1_001.unaln.bam 309033588 BAM S38_L004_R1 submitted_unaligned CPTAC3 9f76f86c-e302-4c89-ab78-1a6d70b491c7 94b3e5aea7f318468ea2e0f239d4e0c4 {"aliquot_tag": "ALQ_5392417a", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.miRNA-Seq.T.hg38 C3L-01157 GBM miRNA-Seq tumor CPT0199770009 75bee588-b666-4c4e-9561-44b468392f94_mirnaseq_gdc_realn.bam 342668233 BAM harmonized CPTAC3 5ed674b4-7728-413e-9025-13c5c07cca2b 2010acf6d0a49a6b80f633af1095060b {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.RNA-Seq.chimeric.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.chimeric.gdc_realn.bam 138899945 BAM chimeric harmonized CPTAC3 3b73be6d-da58-49eb-9f98-3d3cd30a7cb1 e1f14425b8282adf56c2e83173a892d9 {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.RNA-Seq.genomic.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.genomic.gdc_realn.bam 6263357662 BAM genomic harmonized CPTAC3 bd70d52d-8d95-4df2-b59c-5c0486c5aaa0 88767002a2dfe7e8f9d3d19a09c99dda {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.RNA-Seq.S10_L003_R1.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R1_001.fastq.gz 2746501963 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 7e17f145-b0f4-4db5-8739-87119b0d9500 4ceb14bb56c9758debb290628dfdb78e {"aliquot_tag": "ALQ_5392417a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.RNA-Seq.S10_L003_R2.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R2_001.fastq.gz 2884065208 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 f9a967f9-6406-40e3-8843-662f83c5f38d 7d9ab6671af4af8f9134b42e377be9b2 {"aliquot_tag": "ALQ_5392417a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.RNA-Seq.transcriptome.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.transcriptome.gdc_realn.bam 6390703144 BAM transcriptome harmonized CPTAC3 d3f2edc5-6400-49c5-87e1-2ba173c74919 69ced2aa37bdae93e87cef6397e821c7 {"aliquot_tag": "ALQ_5392417a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.WGS.N C3L-01157 GBM WGS blood_normal CPT0200400002 CPT0200400002.WholeGenome.RP-1303.bam 62002874799 BAM submitted_aligned CPTAC3 285ca7b1-1d00-43db-a2cf-62c62859b02b 5f54a1e824d383af84f481f6ff89f26d {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01157.WGS.N.hg38 C3L-01157 GBM WGS blood_normal CPT0200400002 c3b0e158-5c09-4c05-9fb8-32f6b08c8b63_wgs_gdc_realn.bam 87977564481 BAM harmonized CPTAC3 656415e5-82ea-4184-8840-8dfb1cfa8c75 e6227bb570e2f65d0ffd43bfa4262a41 {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01157.WGS.T C3L-01157 GBM WGS tumor CPT0199770006 CPT0199770006.WholeGenome.RP-1303.bam 71598419519 BAM submitted_aligned CPTAC3 a0d6f247-4deb-4b78-8769-9d0180bf4769 5c190565c5a8d92ecbf67db2d161809b {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.WGS.T.hg38 C3L-01157 GBM WGS tumor CPT0199770006 05f468bf-e2ce-480d-ad81-68644619e4ee_wgs_gdc_realn.bam 103506832881 BAM harmonized CPTAC3 3ce52428-a149-4c44-bf49-49b978eed662 4a5477925d78940eb9b79c5f3dfdf0fb {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.WXS.N C3L-01157 GBM WXS blood_normal CPT0200400002 CPT0200400002.WholeExome.RP-1303.bam 22487358946 BAM submitted_aligned CPTAC3 6f2ff738-0f87-4e29-afca-e835c35e53a0 1f79f603b20fe1b9cfc3e6fd91d59da6 {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01157.WXS.N.hg38 C3L-01157 GBM WXS blood_normal CPT0200400002 c3b0e158-5c09-4c05-9fb8-32f6b08c8b63_wxs_gdc_realn.bam 30552698394 BAM harmonized CPTAC3 4c548d4d-a644-43a2-ae5d-7d7b7ba59ac6 3f490db8b1f9c75f6053da6616b3b6e4 {"aliquot_tag": "ALQ_43ae5471", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01157.WXS.T C3L-01157 GBM WXS tumor CPT0199770006 CPT0199770006.WholeExome.RP-1303.bam 28639693248 BAM submitted_aligned CPTAC3 2ce3e40c-e135-4c00-84eb-01bc70835751 69ca4149a07826f66d93a368ce8d788f {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01157.WXS.T.hg38 C3L-01157 GBM WXS tumor CPT0199770006 05f468bf-e2ce-480d-ad81-68644619e4ee_wxs_gdc_realn.bam 39984156211 BAM harmonized CPTAC3 493a7d81-351a-4cfa-a114-c691d7b968ed e49f436c2b7759089f213c99fe57afd7 {"aliquot_tag": "ALQ_c32d5ceb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_c1b26c.MethArray.Green.T C3L-01158 PDA Methylation_Array tumor CPT0171630020 203561450030_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 338e41cb-94cf-4e70-a201-5d728d4eaa94 a53456874ba3215ce87da536db04b3b4 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_c1b26c.MethArray.Red.T C3L-01158 PDA Methylation_Array tumor CPT0171630020 203561450030_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 f5c99572-c417-4d5f-b190-6be9d47555fb 95e0608c10f97e72a32790db8511fecc {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_c1b26c.WGS.T C3L-01158 PDA WGS tumor CPT0171630020 CPT0171630020.WholeGenome.RP-1303.bam 77947699392 BAM submitted_aligned CPTAC3 fcbf52e0-3eaa-48f0-8f02-2628928080df 8dfd876c2a4bb02a45f48aabcc314d33 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_c1b26c.WGS.T.hg38 C3L-01158 PDA WGS tumor CPT0171630020 a3da4c4a-e715-44c1-bc5a-2a1cfbd0c4ee_wgs_gdc_realn.bam 110266028424 BAM harmonized CPTAC3 9829625a-e392-4560-b898-c677a3afbbb9 c5a9cece0cbb8c5823957ee9a5738595 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_c1b26c.WXS.T C3L-01158 PDA WXS tumor CPT0171630020 CPT0171630020.WholeExome.RP-1303.bam 70747936289 BAM submitted_aligned CPTAC3 a9c6ef7e-e552-48bf-8d86-ad97cd828c25 18c43c10e1f1ef68d5353e30a6373750 {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_c1b26c.WXS.T.hg38 C3L-01158 PDA WXS tumor CPT0171630020 a3da4c4a-e715-44c1-bc5a-2a1cfbd0c4ee_wxs_gdc_realn.bam 97100762718 BAM harmonized CPTAC3 0026fb13-a3e7-405e-a4ac-7f108096399b 83a8504ac01cb52f1fa1bfd443c6c56c {"aliquot_tag": "DUP_c1b26c", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.MethArray.Green.T C3L-01158 PDA Methylation_Array tumor CPT0171630026 203561620053_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 95ad2839-4704-49d4-8290-4e356c8936e5 6e725c1321fefa8010d529f2b0c1028d {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.MethArray.Red.T C3L-01158 PDA Methylation_Array tumor CPT0171630026 203561620053_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 e3f3ac72-1acc-4901-8cf1-69dcc575d8a0 844599bd6c04df52fdc5b24e1d6bf616 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.Targeted.T C3L-01158 PDA Targeted_Sequencing tumor CPT0171630026 CPT0171630026.CustomSelection.RP-1303.PDO-18786.bam 4828424084 BAM submitted_aligned CPTAC3 26b3e792-b801-48b8-9b91-0ae139fcc555 00061f66746ff4d5a795986cf7c142eb {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.Targeted.T.hg38 C3L-01158 PDA Targeted_Sequencing tumor CPT0171630026 d50fb1bc-2197-437c-b9d6-b142fe878df6_targetedsequencing_gdc_realn.bam 6651381470 BAM harmonized CPTAC3 440a790c-7e9f-48ed-bdbc-b0483e7f8d35 3d0990eb0ec88f25f41b0927ea8e95a5 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.WGS.T C3L-01158 PDA WGS tumor CPT0171630026 CPT0171630026.WholeGenome.RP-1303.bam 54567905966 BAM submitted_aligned CPTAC3 2107111f-8f36-45e4-b3d3-dea6a8a4c90c 52f961df7ddf63a74007d75c3614ecf2 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.WGS.T.hg38 C3L-01158 PDA WGS tumor CPT0171630026 d50fb1bc-2197-437c-b9d6-b142fe878df6_wgs_gdc_realn.bam 77965649620 BAM harmonized CPTAC3 dd325470-f95e-4515-92b7-b6e3f9f61b42 b8cac53ce1e5bf66be39df53b68ca8a4 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.WXS.T C3L-01158 PDA WXS tumor CPT0171630026 CPT0171630026.WholeExome.RP-1303.bam 43909051885 BAM submitted_aligned CPTAC3 cc0b88e0-7026-4b54-bbb6-a3a09d280386 d624417699c5b6a927dee701a6a97103 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.DUP_e9a21759.WXS.T.hg38 C3L-01158 PDA WXS tumor CPT0171630026 d50fb1bc-2197-437c-b9d6-b142fe878df6_wxs_gdc_realn.bam 62459308600 BAM harmonized CPTAC3 f72ee660-de37-46ad-840e-a64487b77e77 c7c301f7d5ee379ab96e331ea806c7c2 {"aliquot_tag": "DUP_e9a21759", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.MethArray.Green.A C3L-01158 PDA Methylation_Array tissue_normal CPT0171650055 203561620153_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b4269624-ab84-4381-8ab1-d084614b9d0a d5d83b0dbde41c16d94677eeb9b9d265 {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01158.MethArray.Red.A C3L-01158 PDA Methylation_Array tissue_normal CPT0171650055 203561620153_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 5cf053e3-3e92-4953-8783-a9ad3517e4ee 41b1219fb0eb58583c059c8daca9c11a {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01158.miRNA-Seq.S1_L002_R1.T C3L-01158 PDA miRNA-Seq tumor CPT0171630017 190108_UNC31-K00269_0176_AHYGLVBBXX_ATCACG_S1_L002_R1_001.unaln.bam 167468804 BAM S1_L002_R1 submitted_unaligned CPTAC3 31e8c10f-13ab-47a2-9e10-ed7187e28df0 e0663ca80e250032ea26c2c0b4267e70 {"aliquot_tag": "ALQ_b588740c", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.miRNA-Seq.T.hg38 C3L-01158 PDA miRNA-Seq tumor CPT0171630017 390f11e4-d8d0-41ba-8e37-b4ceceb124f4_mirnaseq_gdc_realn.bam 187473717 BAM harmonized CPTAC3 9ab97b2e-880d-4227-87d9-68f84972e2bf eb249f93efbf5796e833c1ad441887e7 {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.RNA-Seq.chimeric.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.chimeric.gdc_realn.bam 32806523 BAM chimeric harmonized CPTAC3 185743d3-1be8-4521-ad84-7cc1a154c145 86f19f8ce147d5cd426df03bb7af6dd4 {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.genomic.gdc_realn.bam 12190257066 BAM genomic harmonized CPTAC3 cb20a257-7164-436b-b223-1fa8fed27ca1 0f6b3a14f336a7601115e4c5fbd89dce {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.RNA-Seq.S7_L002_R1.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R1_001.fastq.gz 4754861470 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 ece270eb-efc7-440c-9a45-8c8000ba796c 8faa449e5cf9a16a7b19da3b82f0291e {"aliquot_tag": "ALQ_b588740c", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.RNA-Seq.S7_L002_R2.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 cc148b01-aa6a-40cf-ac6c-75d6bbedd59b da1dd6c3a66dda928dcc199d64c8dc64 {"aliquot_tag": "ALQ_b588740c", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.RNA-Seq.transcriptome.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.transcriptome.gdc_realn.bam 11045165290 BAM transcriptome harmonized CPTAC3 4c0e48ec-5528-4754-a11a-acd621e5515a 2624bbe2737aa5714ade3097e889f8d8 {"aliquot_tag": "ALQ_b588740c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01158.WGS.N C3L-01158 PDA WGS blood_normal CPT0171560002 CPT0171560002.WholeGenome.RP-1303.bam 60515833377 BAM submitted_aligned CPTAC3 301ba45f-36aa-44d0-a7de-d3b450ca4f2e 10ebe6de3cefc7cbc144f9941165eb1e {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01158.WGS.N.hg38 C3L-01158 PDA WGS blood_normal CPT0171560002 81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wgs_gdc_realn.bam 87190218525 BAM harmonized CPTAC3 4b59a227-4b74-463b-b8c6-964f07c841b7 474da798a5c01d369023b994496dd8a6 {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01158.WXS.A C3L-01158 PDA WXS tissue_normal CPT0171650055 CPT0171650055.WholeExome.RP-1303.bam 39910866153 BAM submitted_aligned CPTAC3 f6b0e467-6f94-47b2-975d-e6a11ec14ad7 b756fa7b81328859d82c0f4eeff048ce {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01158.WXS.A C3L-01158 PDA WXS tissue_normal CPT0171650057 CPT0171650057.WholeExome.RP-1303.bam 58423074859 BAM submitted_aligned CPTAC3 30c7d156-27fd-4dd5-9de1-f34c9b2cc1f5 7502a81ce9204216b87a382f043d859d {"aliquot_tag": "ALQ_5ea444a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01158.WXS.A.hg38 C3L-01158 PDA WXS tissue_normal CPT0171650055 1e789670-d307-4a56-99ab-7bd348c1555e_wxs_gdc_realn.bam 55878504036 BAM harmonized CPTAC3 d80b306c-5c0c-470d-a762-4b277f9acb66 dc01eb5993765358f8e4dcfd528d93fc {"aliquot_tag": "ALQ_b0aa2584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01158.WXS.N C3L-01158 PDA WXS blood_normal CPT0171560002 CPT0171560002.WholeExome.RP-1303.bam 27117657273 BAM submitted_aligned CPTAC3 c989a5e9-3ec9-4d76-9896-665db392d8fd 449f6308f9eedcec5f87e21573c19783 {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01158.WXS.N.hg38 C3L-01158 PDA WXS blood_normal CPT0171560002 81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wxs_gdc_realn.bam 36792322242 BAM harmonized CPTAC3 65ade05f-b8cc-4d7d-b501-cd91d08e5885 7609959f62306cac59f64122f92c48aa {"aliquot_tag": "ALQ_928d4c1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01158.WXS.T C3L-01158 PDA WXS tumor CPT0171630022 CPT0171630022.WholeExome.RP-1303.bam 58476666614 BAM submitted_aligned CPTAC3 88698e11-6693-4808-9a68-754b4bade5d4 d1626f094063b8260c8c982171edaf59 {"aliquot_tag": "ALQ_eecfd340", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_c4e018f9.MethArray.Green.T C3L-01160 PDA Methylation_Array tumor CPT0170600018 203561450020_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 7f160d98-c8ee-45b8-882f-9c3dd3af128d 252e8a869042a262cbfccd0e2c232fa5 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_c4e018f9.MethArray.Red.T C3L-01160 PDA Methylation_Array tumor CPT0170600018 203561450020_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 20da77de-bb22-4592-b9d5-8d6703d68dc9 eb683dcc135d39b487529e749a8ea4b8 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_c4e018f9.WGS.T C3L-01160 PDA WGS tumor CPT0170600018 CPT0170600018.WholeGenome.RP-1303.bam 64661419007 BAM submitted_aligned CPTAC3 e4454b36-afcf-4a80-a7a8-18d4b3af4cf0 3b727abd21ea98718412b97f20157e8e {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_c4e018f9.WGS.T.hg38 C3L-01160 PDA WGS tumor CPT0170600018 a8c4506f-92ba-4202-9c7b-ad08ebfb3b64_wgs_gdc_realn.bam 92384111277 BAM harmonized CPTAC3 1000b82e-99a4-4743-90b4-625b6dc12984 7277b4142209956bb6558dfa255dd487 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_c4e018f9.WXS.T C3L-01160 PDA WXS tumor CPT0170600018 CPT0170600018.WholeExome.RP-1303.bam 65639438807 BAM submitted_aligned CPTAC3 3ad0348b-748f-4318-83ca-d3e13e2a42db 4e2044d8fb0a94391757a5f185fc32c5 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_c4e018f9.WXS.T.hg38 C3L-01160 PDA WXS tumor CPT0170600018 a8c4506f-92ba-4202-9c7b-ad08ebfb3b64_wxs_gdc_realn.bam 91330545140 BAM harmonized CPTAC3 b515de0e-fcee-4a88-85f6-29e4dc115ccc eb74f04693eb9011204a648f9a831134 {"aliquot_tag": "DUP_c4e018f9", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.MethArray.Green.T C3L-01160 PDA Methylation_Array tumor CPT0170600024 203561450073_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1951c2f6-4401-471c-803e-6fd787e360cf 2159d6b1bed93b26f41cff198a082633 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.MethArray.Red.T C3L-01160 PDA Methylation_Array tumor CPT0170600024 203561450073_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 0435ae8c-b09a-4e10-b693-36024236cc65 e1b46ce99fbe74a7d1a2a56b2e4b46d9 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.Targeted.T C3L-01160 PDA Targeted_Sequencing tumor CPT0170600024 CPT0170600024.CustomSelection.RP-1303.PDO-18786.bam 5303930441 BAM submitted_aligned CPTAC3 c32325ff-ec0c-485c-b6e4-d3423aa3f678 56f548b3c3e0f10e2462a1147c48e09c {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.Targeted.T.hg38 C3L-01160 PDA Targeted_Sequencing tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_targetedsequencing_gdc_realn.bam 7459835184 BAM harmonized CPTAC3 9b3f874f-9473-4d99-b4bd-69cb37f0dc0d 824b087c5c223fae159e438cbd1286ca {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.WGS.T C3L-01160 PDA WGS tumor CPT0170600024 CPT0170600024.WholeGenome.RP-1303.bam 67952930675 BAM submitted_aligned CPTAC3 df08c8cd-0ab1-4ea0-9471-4dd7458247d9 c5d6274f471be852614a3a9f0b07e813 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.WGS.T.hg38 C3L-01160 PDA WGS tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_wgs_gdc_realn.bam 96428254780 BAM harmonized CPTAC3 05cb8a97-9225-4a2c-b9e4-048375f3478d 808a5270db25c341e14c9d040aaa7e33 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.WXS.T C3L-01160 PDA WXS tumor CPT0170600024 CPT0170600024.WholeExome.RP-1303.bam 56175912575 BAM submitted_aligned CPTAC3 9de76634-b251-4bdd-805d-5070367b7dc9 6b6a142e029fa48832df21f540d3509a {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.DUP_e67b0711.WXS.T.hg38 C3L-01160 PDA WXS tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_wxs_gdc_realn.bam 80069242436 BAM harmonized CPTAC3 ad37577b-d536-4929-9cbc-cb39d4bb9969 7a58e168809bef442c484ba5f55020b2 {"aliquot_tag": "DUP_e67b0711", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.miRNA-Seq.S2_L002_R1.T C3L-01160 PDA miRNA-Seq tumor CPT0170600015 190108_UNC31-K00269_0176_AHYGLVBBXX_CGATGT_S2_L002_R1_001.unaln.bam 221634763 BAM S2_L002_R1 submitted_unaligned CPTAC3 e3473974-ec7c-4133-b635-1ca02d4721c9 85eea2ca93ffcd5d5695ed13c472576e {"aliquot_tag": "ALQ_ba516444", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.miRNA-Seq.T.hg38 C3L-01160 PDA miRNA-Seq tumor CPT0170600015 fad624ff-e1cb-4c9f-a5fd-4c771225127d_mirnaseq_gdc_realn.bam 241614413 BAM harmonized CPTAC3 313d4c80-9294-44eb-b9a3-a782d4529e2b 687f82ec4c1361fbfe46948ca80e5cdc {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.RNA-Seq.chimeric.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.chimeric.gdc_realn.bam 33464846 BAM chimeric harmonized CPTAC3 b2322eef-0e56-43c9-89fe-13fe52c61fc1 851c54dccde689630c014b17724744bc {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.RNA-Seq.genomic.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.genomic.gdc_realn.bam 13484325163 BAM genomic harmonized CPTAC3 76085a29-ab12-480b-b221-6e936e8fc759 4d3159a5259a0069062acfa1f693f9d7 {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.RNA-Seq.S6_L002_R1.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4360439785 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b 7438c37cc32841ff81f6c2df1ddb69d0 {"aliquot_tag": "ALQ_ba516444", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.RNA-Seq.S6_L002_R2.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4741609485 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 20a9db35-056d-43aa-b71d-dea448930ef0 be78f4274c931011a1fcdb9a22845c67 {"aliquot_tag": "ALQ_ba516444", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.RNA-Seq.transcriptome.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.transcriptome.gdc_realn.bam 10090542222 BAM transcriptome harmonized CPTAC3 b5657438-0e30-4433-b161-390a1aedcd35 1b1e7117d4c9f3976b748c3ba7295a52 {"aliquot_tag": "ALQ_ba516444", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01160.WGS.N C3L-01160 PDA WGS blood_normal CPT0167290002 CPT0167290002.WholeGenome.RP-1303.bam 64378887116 BAM submitted_aligned CPTAC3 3bc55e0a-e5f9-498b-9516-e25f1b171625 6a31044e1774ec0f6a28050718155cd5 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01160.WGS.N.hg38 C3L-01160 PDA WGS blood_normal CPT0167290002 07384100-195f-4071-a266-1ba880b66180_wgs_gdc_realn.bam 92607286794 BAM harmonized CPTAC3 159ed349-6664-4f63-a807-2c0ec490012b f33f7b553e8b8abcc48964a03f773c99 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01160.WXS.A C3L-01160 PDA WXS tissue_normal CPT0170620038 CPT0170620038.WholeExome.RP-1303.bam 60073456569 BAM submitted_aligned CPTAC3 a51fa67d-e540-4267-aa16-d72a3465ba9a 4d9377bf87ca2aa4b9dbb6f2b4292705 {"aliquot_tag": "ALQ_8c16291b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01160.WXS.N C3L-01160 PDA WXS blood_normal CPT0167290002 CPT0167290002.WholeExome.RP-1303.bam 24421148529 BAM submitted_aligned CPTAC3 afa7c130-3731-41ca-a718-fbdf0600a69a d111ad4dc20f7c2bd14b5f08e61f54e6 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01160.WXS.N.hg38 C3L-01160 PDA WXS blood_normal CPT0167290002 07384100-195f-4071-a266-1ba880b66180_wxs_gdc_realn.bam 33237579668 BAM harmonized CPTAC3 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 8f69626d2497a615179f52cf6589d1b6 {"aliquot_tag": "ALQ_a2a2ded1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01160.WXS.T C3L-01160 PDA WXS tumor CPT0170600020 CPT0170600020.WholeExome.RP-1303.bam 47421435720 BAM submitted_aligned CPTAC3 4f64a688-7914-4871-97f8-40c38bc3bfc0 4dc9caa67b8f17185b3caa5e2bda076a {"aliquot_tag": "ALQ_e116c308", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01182.MethArray.Green.Tpb C3L-01182 AML Methylation_Array tumor_peripheral_blood CPT0338160001 205707890143_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e5428025-e008-40fe-9537-e0748fe03957 9627f2fbd75c66f1a19c6dfcd9a254db {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.MethArray.Red.Tpb C3L-01182 AML Methylation_Array tumor_peripheral_blood CPT0338160001 205707890143_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 2356c956-4851-4e4f-b0d6-c52da5b2c3c1 1be172b40339f9431643eefcd6bc25cc {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.miRNA-Seq.S22_L001_R1.Tpb C3L-01182 AML miRNA-Seq tumor_peripheral_blood CPT0338140004 220125_UNC32-K00270_0311_AHMNYYBBXY_TGACCA_S22_L001_R1_001.unaln.bam 318733137 BAM S22_L001_R1 submitted_unaligned CPTAC3 fa6fc1c3-ff21-4339-84c4-8566715d6a19 dac3a5718cd1fa4aec3ab39f8c440df0 {"aliquot_tag": "ALQ_a59b9bf0", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.miRNA-Seq.Tpb.hg38 C3L-01182 AML miRNA-Seq tumor_peripheral_blood CPT0338140004 c3b964ae-40af-4dbe-b2c2-0eda709dd565_mirnaseq_gdc_realn.bam 364034201 BAM harmonized CPTAC3 1ee59aa3-3d19-464d-8236-d88b0e2c31b4 cb995f374208280f8d51ad400f8c85e0 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.RNA-Seq.chimeric.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.chimeric.gdc_realn.bam 223102924 BAM chimeric harmonized CPTAC3 18d6fcdc-5d27-4490-9eb5-7af91ede22f7 fdbd6a14f06ef240edd4baafb6fdeff8 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.RNA-Seq.genomic.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.genomic.gdc_realn.bam 5572543578 BAM genomic harmonized CPTAC3 4689e2e4-10aa-472a-b7b0-897370f61311 77b3a953a442e7dad921686c77edcfe7 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.RNA-Seq.S29_L008_R1.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R1_001.fastq.gz 2683736462 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 3364d291-2534-49ae-b9e4-536ea85d6c47 f5e6873856eb9d9565d38a4343804916 {"aliquot_tag": "ALQ_a59b9bf0", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.RNA-Seq.S29_L008_R2.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R2_001.fastq.gz 2896718250 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 22838a11-4def-4406-a04d-b9cfdfee17d2 a08725d2efc48ee9599d2e866c1483fb {"aliquot_tag": "ALQ_a59b9bf0", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.RNA-Seq.transcriptome.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.transcriptome.gdc_realn.bam 4297487254 BAM transcriptome harmonized CPTAC3 9b295ada-4f40-424b-b26e-1e89960bf526 e9d005081f333ca887a3e2f0671c0023 {"aliquot_tag": "ALQ_a59b9bf0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.WGS.Nbc C3L-01182 AML WGS buccal_normal CPT0338180003 CPT0338180003.WholeGenome.RP-2158.bam 49209749471 BAM submitted_aligned CPTAC3 3086d82e-74c9-4bba-a245-98cf41b540dd fee5a8fa4379875c9aa7052a0f9b4bb7 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01182.WGS.Nbc.hg38 C3L-01182 AML WGS buccal_normal CPT0338180003 a3d7c356-f06c-42e9-86d5-945264790f85_wgs_gdc_realn.bam 166664638598 BAM harmonized CPTAC3 d7132b30-16af-41cd-a0be-7ed4971b0d12 70013bbe24fc361615e7cc2eed287f95 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01182.WGS.Tpb C3L-01182 AML WGS tumor_peripheral_blood CPT0338160001 CPT0338160001.WholeGenome.RP-2158.bam 41162131471 BAM submitted_aligned CPTAC3 7457b708-7968-445d-92b4-77f9294e1f8b f174c0b511291e33a5ec38f124172ac4 {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.WGS.Tpb.hg38 C3L-01182 AML WGS tumor_peripheral_blood CPT0338160001 204def57-8086-4ef1-b2e8-1eec67459146_wgs_gdc_realn.bam 118587662579 BAM harmonized CPTAC3 9203d3b3-eb05-4923-989d-1c8abb8a42ea d08994bb9daa2c53ad35f9d54350887b {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.WXS.Nbc C3L-01182 AML WXS buccal_normal CPT0338180003 CPT0338180003.WholeExome.RP-1303.bam 19894836681 BAM submitted_aligned CPTAC3 9c4439c5-4676-4a10-b988-b46075f1174e 2bdbc35672ab27cd2a1058f9af984fe0 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01182.WXS.Nbc.hg38 C3L-01182 AML WXS buccal_normal CPT0338180003 a3d7c356-f06c-42e9-86d5-945264790f85_wxs_gdc_realn.bam 27428631714 BAM harmonized CPTAC3 22ab3498-8a5a-40a2-ae0d-5a1c43a40b3e 2180cc91bc81295bc527d220d1268e39 {"aliquot_tag": "ALQ_fe0fe352", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01182.WXS.Tpb C3L-01182 AML WXS tumor_peripheral_blood CPT0338160001 CPT0338160001.WholeExome.RP-1303.bam 28816819387 BAM submitted_aligned CPTAC3 017cd4a9-15f2-4e98-b6aa-b98512225763 e93d2ece70c157dfb8bf00d6c71d551f {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01182.WXS.Tpb.hg38 C3L-01182 AML WXS tumor_peripheral_blood CPT0338160001 204def57-8086-4ef1-b2e8-1eec67459146_wxs_gdc_realn.bam 39867603059 BAM harmonized CPTAC3 785e0821-0b17-45c6-bd0b-669c180df2fc 5d527931c13ffc3a059c57ec085bcd96 {"aliquot_tag": "ALQ_af313c1f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-01187.MethArray.Green.Tbm C3L-01187 AML Methylation_Array tumor_bone_marrow CPT0338430002 205555390128_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 c2e662b9-310e-4962-aa84-1ec287040472 b89172c2372c1dca44f03966f295332e {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.MethArray.Red.Tbm C3L-01187 AML Methylation_Array tumor_bone_marrow CPT0338430002 205555390128_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 e3428ba2-22b9-4a68-9dba-3f948a7b2c24 2e0bd190d81f9b9eb0ffcff2089e3b89 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.miRNA-Seq.S29_L007_R1.Tbm C3L-01187 AML miRNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCATTC_S29_L007_R1_001.unaln.bam 312695347 BAM S29_L007_R1 submitted_unaligned CPTAC3 868e5fcb-7d24-4d1a-803d-b0226a570ff5 0d348ddcfd8341266194b4976890563a {"aliquot_tag": "ALQ_93755ad6", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-01187.miRNA-Seq.Tbm.hg38 C3L-01187 AML miRNA-Seq tumor_bone_marrow CPT0338420002 88f604d7-a73b-4c2c-8ecd-033cf6ae804b_mirnaseq_gdc_realn.bam 339311267 BAM harmonized CPTAC3 487793ef-e987-409e-9305-f6cbd65c7566 b2431e8cbdddac7b72d702f6034502a4 {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-01187.RNA-Seq.chimeric.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.chimeric.gdc_realn.bam 101722919 BAM chimeric harmonized CPTAC3 771ce5b4-6775-4d0b-b121-650de0c6bba1 bff44ad986fbbe867297cf834333f029 {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.RNA-Seq.genomic.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.genomic.gdc_realn.bam 7315628890 BAM genomic harmonized CPTAC3 9c5d12b5-97f0-419e-82bf-f2efc4f298e7 b649309c87ff09c570223d858f528ea1 {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.RNA-Seq.S15_L004_R1.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R1_001.fastq.gz 3753235852 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 36a6daf5-34a1-4963-b49d-99fedf970fb3 1a4ea75c3b533461ca692906319f11e0 {"aliquot_tag": "ALQ_93755ad6", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-01187.RNA-Seq.S15_L004_R2.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R2_001.fastq.gz 4042840966 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 b0aace93-074d-4c07-9e93-9c9e28d62cd3 4cfd0c04ff16b563c7e11b6d15595e12 {"aliquot_tag": "ALQ_93755ad6", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-01187.RNA-Seq.transcriptome.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.transcriptome.gdc_realn.bam 9775894952 BAM transcriptome harmonized CPTAC3 eb15d193-e667-4e5a-b06f-b653db49fc92 29b1923ade6b7bb80c11b5c58c6b9d6c {"aliquot_tag": "ALQ_93755ad6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.WGS.Tbm C3L-01187 AML WGS tumor_bone_marrow CPT0338430002 CPT0338430002.WholeGenome.RP-2158.bam 43790738502 BAM submitted_aligned CPTAC3 1a0e092d-c61e-4f76-95e0-20bb2377ad0a 839a1b10357a233811e0a8f44811f824 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.WGS.Tbm.hg38 C3L-01187 AML WGS tumor_bone_marrow CPT0338430002 1863f9ce-3290-488b-9291-8325fe6a6608_wgs_gdc_realn.bam 126568595557 BAM harmonized CPTAC3 7d3e6c79-f869-4a7a-a1d6-fb496853d8e8 ee4178624b4ec3ca4f521b4ba2aecbf0 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.WXS.Nbc C3L-01187 AML WXS buccal_normal CPT0338440004 CPT0338440004.WholeExome.RP-1303.bam 26631554741 BAM submitted_aligned CPTAC3 c758d3d2-48c8-45ed-baee-38459fa1b9dd 492171df2f5ffe3075e3685b9521d7c2 {"aliquot_tag": "ALQ_f5560a43", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01187.WXS.Nbc.hg38 C3L-01187 AML WXS buccal_normal CPT0338440004 0511313c-45b8-4efc-ada5-2ba9a2cc67a3_wxs_gdc_realn.bam 35989060288 BAM harmonized CPTAC3 ec6f0fdb-2025-4824-8be4-aea9c55ebb72 430a24383d3fd8b4d29b285fb91e1ceb {"aliquot_tag": "ALQ_f5560a43", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01187.WXS.Tbm C3L-01187 AML WXS tumor_bone_marrow CPT0338430002 CPT0338430002.WholeExome.RP-1303.bam 30138786215 BAM submitted_aligned CPTAC3 9b909215-8af2-4abd-bc19-aa8ab6cc55b6 5c7dc01877c0d62944f24ec340ebd76c {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01187.WXS.Tbm.hg38 C3L-01187 AML WXS tumor_bone_marrow CPT0338430002 1863f9ce-3290-488b-9291-8325fe6a6608_wxs_gdc_realn.bam 41773581801 BAM harmonized CPTAC3 921dcbd0-ce38-4af9-aea5-8c31b4105cce 5585d5e2ca8ecd94230dd3bdcee29173 {"aliquot_tag": "ALQ_ae157366", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-01188.MethArray.Green.Tbm C3L-01188 AML Methylation_Array tumor_bone_marrow CPT0338510002 205589740003_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a627a14e-bb18-49a0-bb48-0da69eb679f3 87f0ad020cd6a9352c067c05dc409b5a {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.MethArray.Red.Tbm C3L-01188 AML Methylation_Array tumor_bone_marrow CPT0338510002 205589740003_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 87350985-31e0-4a03-8095-a430e169f6b4 80306902795351d65009b3ec6116e330 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.miRNA-Seq.S30_L007_R1.Tbm C3L-01188 AML miRNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCCCGA_S30_L007_R1_001.unaln.bam 250272970 BAM S30_L007_R1 submitted_unaligned CPTAC3 98da385e-768d-4444-9f28-cea94bb1e460 bfd13b6fc1fb4e9af5766d74482ae844 {"aliquot_tag": "ALQ_d9c54277", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.miRNA-Seq.Tbm.hg38 C3L-01188 AML miRNA-Seq tumor_bone_marrow CPT0338480002 7fc7f4c0-1683-4b62-be1e-d3b1e56cb736_mirnaseq_gdc_realn.bam 265557404 BAM harmonized CPTAC3 c226ddd7-e030-4a51-accf-a0b774d321e2 b5a0ed88ed6bf6fec5ad4690dc6e8a59 {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.RNA-Seq.chimeric.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.chimeric.gdc_realn.bam 78291770 BAM chimeric harmonized CPTAC3 f6d2dea8-8d00-4100-829d-f6118be15db9 0b7427e92237825e4791c14c9f00ab06 {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.RNA-Seq.genomic.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.genomic.gdc_realn.bam 7695454826 BAM genomic harmonized CPTAC3 5654dad6-c513-4469-b5ab-9b4ea7d44b4f 92f4eff4953a144a166827407e51e7da {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.RNA-Seq.S13_L004_R1.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R1_001.fastq.gz 3897699936 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 65a13af0-794a-4f67-954b-26d8b22325fe bf6c28a5ff3561252a6dcade63632f54 {"aliquot_tag": "ALQ_d9c54277", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.RNA-Seq.S13_L004_R2.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R2_001.fastq.gz 4168713236 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 716b4d9b-71cf-41ad-828b-d289d663f9bc eedbe4404faf802761e0a0f7af59f46a {"aliquot_tag": "ALQ_d9c54277", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.RNA-Seq.transcriptome.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.transcriptome.gdc_realn.bam 11090586487 BAM transcriptome harmonized CPTAC3 7984b743-45a7-44b8-8832-89be083c290c f6faf59c526937348257172c9aeb0a19 {"aliquot_tag": "ALQ_d9c54277", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.WGS.Nbc C3L-01188 AML WGS buccal_normal CPT0338520002 CPT0338520002.WholeGenome.RP-2158.bam 49609623456 BAM submitted_aligned CPTAC3 9422e5ad-348f-40cd-a879-d8c6f0a9a302 4a9722d2a6d63a8296dc03ba21ac4cf0 {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01188.WGS.Nbc.hg38 C3L-01188 AML WGS buccal_normal CPT0338520002 3bdffbda-35b4-4a13-a102-3979d363b53d_wgs_gdc_realn.bam 147582359097 BAM harmonized CPTAC3 f50beef2-41e8-4cab-828a-3d2adc6d21eb 86f513926e55d6650a76d0c8325b0277 {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01188.WGS.Tbm C3L-01188 AML WGS tumor_bone_marrow CPT0338510002 CPT0338510002.WholeGenome.RP-2158.bam 49742579452 BAM submitted_aligned CPTAC3 fbf77026-e596-45fa-9ca6-9d851fde1ec7 1a65f4de79e172f851a016b2a80ec690 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.WGS.Tbm.hg38 C3L-01188 AML WGS tumor_bone_marrow CPT0338510002 52d511e6-0272-45e6-a597-06aae5d26918_wgs_gdc_realn.bam 151199148802 BAM harmonized CPTAC3 443d5fcc-56db-4bb1-8765-0b2ae5399577 cb608e06ba219880bd6b43c26ce96ddc {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.WXS.Nbc C3L-01188 AML WXS buccal_normal CPT0338520002 CPT0338520002.WholeExome.RP-1303.bam 20317600042 BAM submitted_aligned CPTAC3 f37ee0e5-4b23-4a2f-bf96-333435ef3ea2 6add0a75b800b2fb442511c02b0d8cbe {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01188.WXS.Nbc.hg38 C3L-01188 AML WXS buccal_normal CPT0338520002 3bdffbda-35b4-4a13-a102-3979d363b53d_wxs_gdc_realn.bam 27611894401 BAM harmonized CPTAC3 ff371b49-e65e-4800-bbe1-788160cc302d 04c86f103ae901f0a16f1e5f5b84ce47 {"aliquot_tag": "ALQ_58298973", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01188.WXS.Tbm C3L-01188 AML WXS tumor_bone_marrow CPT0338510002 CPT0338510002.WholeExome.RP-1303.bam 21800123676 BAM submitted_aligned CPTAC3 96328a39-5c15-45ab-bed0-86402faf7893 9145b511fb9791cbefb1cbc856c8b864 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01188.WXS.Tbm.hg38 C3L-01188 AML WXS tumor_bone_marrow CPT0338510002 52d511e6-0272-45e6-a597-06aae5d26918_wxs_gdc_realn.bam 29793720760 BAM harmonized CPTAC3 f56befc9-9d5c-4c40-8602-a1cd336fbb93 527dab6e7665e461a19c18b9b4f197d6 {"aliquot_tag": "ALQ_1f89f3a3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-01201.MethArray.Green.Tbm C3L-01201 AML Methylation_Array tumor_bone_marrow CPT0325890002 205555380136_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fc91136f-88dd-45f7-b8a3-99da25f997a5 31dd9db67e75561365d165f9d0ba23f6 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.MethArray.Red.Tbm C3L-01201 AML Methylation_Array tumor_bone_marrow CPT0325890002 205555380136_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 489fcf92-cd4a-4d7b-9bd3-f7e9dba97221 aa51471d278fe4915769157b7abf2147 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.miRNA-Seq.S14_L001_R1.Tbm C3L-01201 AML miRNA-Seq tumor_bone_marrow CPT0325900002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTAGAG_S14_L001_R1_001.unaln.bam 359438691 BAM S14_L001_R1 submitted_unaligned CPTAC3 a082c4d8-77aa-4cde-95cd-71bb441de330 3bfd471b3a4d4cff7876012eac3826dd {"aliquot_tag": "ALQ_f8567b36", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.miRNA-Seq.Tbm.hg38 C3L-01201 AML miRNA-Seq tumor_bone_marrow CPT0325900002 3e12d953-0f85-4566-852e-fcb6f9e0b131_mirnaseq_gdc_realn.bam 377852908 BAM harmonized CPTAC3 8d6e447d-2937-48e2-969f-52c9b29a07f1 1dce1ded02dba5a1104f50c9924d4df1 {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.RNA-Seq.chimeric.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.chimeric.gdc_realn.bam 111970743 BAM chimeric harmonized CPTAC3 e5eab3cf-25fe-4c70-893c-19a4b7826949 7b8ef01095acdbb6f6115768eabf4732 {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.RNA-Seq.genomic.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.genomic.gdc_realn.bam 7486083855 BAM genomic harmonized CPTAC3 68b2ccb5-2e54-4666-b93b-27c8bd0e1eb2 557d24bf4e61660cc5f4f288310fc382 {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.RNA-Seq.S13_L004_R1.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 3769469819 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 1ee6cfbe-280d-411c-bf00-f541cc3ff6db 3fe22e7f0d3d31675aa26029e7ad09fd {"aliquot_tag": "ALQ_f8567b36", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-01201.RNA-Seq.S13_L004_R2.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 3999973406 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 02d60360-a6a6-409f-bf80-438b462b4daf 5231906217fed12fa6b697f3117e4b70 {"aliquot_tag": "ALQ_f8567b36", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-01201.RNA-Seq.transcriptome.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.transcriptome.gdc_realn.bam 9225521000 BAM transcriptome harmonized CPTAC3 83e0ba3a-6c81-4aa5-9dfe-c118c39cff23 6b7fb6626141775db5e7995b908f6a5f {"aliquot_tag": "ALQ_f8567b36", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.WGS.Tbm C3L-01201 AML WGS tumor_bone_marrow CPT0325890002 CPT0325890002.WholeGenome.RP-2158.bam 51898633882 BAM submitted_aligned CPTAC3 e2abcbb2-9bb3-43ed-90dc-8503740d56d8 34e304e13b731b5b861a0163192c9203 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.WGS.Tbm.hg38 C3L-01201 AML WGS tumor_bone_marrow CPT0325890002 21f6264c-abd6-4c1f-9874-2b8fffda42c9_wgs_gdc_realn.bam 155628477659 BAM harmonized CPTAC3 5127a5c1-38bf-47ea-82da-200b0fb36795 c20fab3db3a39a0c8989fd182ff140c0 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.WXS.Nbc C3L-01201 AML WXS buccal_normal CPT0325970003 CPT0325970003.WholeExome.RP-1303.bam 24228241310 BAM submitted_aligned CPTAC3 c4a364ad-618c-4685-a2e1-cd988655c576 ac8017b0ce7e6d064f6d56903ab09fd8 {"aliquot_tag": "ALQ_3d7197b0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01201.WXS.Nbc.hg38 C3L-01201 AML WXS buccal_normal CPT0325970003 04a42e33-ba61-4888-9dc5-0b8abd04d924_wxs_gdc_realn.bam 33562656252 BAM harmonized CPTAC3 606c41b0-38ac-411d-81a7-5cb0ab967a8e 430cd31d3df995155d6bc119fcc2955c {"aliquot_tag": "ALQ_3d7197b0", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01201.WXS.Tbm C3L-01201 AML WXS tumor_bone_marrow CPT0325890002 CPT0325890002.WholeExome.RP-1303.bam 21901032174 BAM submitted_aligned CPTAC3 68682607-d80c-4590-8a6b-d98d6a061931 45fc365b1c435df4a2440f90d5edf5b2 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01201.WXS.Tbm.hg38 C3L-01201 AML WXS tumor_bone_marrow CPT0325890002 21f6264c-abd6-4c1f-9874-2b8fffda42c9_wxs_gdc_realn.bam 30710997531 BAM harmonized CPTAC3 34f6ef17-ed26-477a-bc53-301f862bd5bd 9cdeced8d69b40c75e8a9382eae31945 {"aliquot_tag": "ALQ_3e1acae2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-01202.MethArray.Green.Tbm C3L-01202 AML Methylation_Array tumor_bone_marrow CPT0165960002 203561450027_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62175ef4-cfcd-4364-8e2c-37184338e00b 81fc5e9bc94d063007e4d4d5418b5cd8 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.MethArray.Red.Tbm C3L-01202 AML Methylation_Array tumor_bone_marrow CPT0165960002 203561450027_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 c3f19b2b-2f81-4cc7-9858-c6497256b3b5 e0fb1f3bd9170c56cc3c1eef06cb84e1 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.miRNA-Seq.S20_L001_R1.Tbm C3L-01202 AML miRNA-Seq tumor_bone_marrow CPT0165970002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGGCC_S20_L001_R1_001.unaln.bam 178549955 BAM S20_L001_R1 submitted_unaligned CPTAC3 e4e9be38-fe77-43fd-b134-d38b87ee7fae 006034522f39f43e180a70fff60bef3b {"aliquot_tag": "ALQ_e0ca815a", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.miRNA-Seq.Tbm.hg38 C3L-01202 AML miRNA-Seq tumor_bone_marrow CPT0165970002 698980c1-3c87-457e-8702-d7201948ffa8_mirnaseq_gdc_realn.bam 198988702 BAM harmonized CPTAC3 6d8f0390-9547-4a31-ae2b-7fc8c064ad52 268c6384e8a09296cbeadf6e74628da3 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.RNA-Seq.chimeric.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.chimeric.gdc_realn.bam 31884098 BAM chimeric harmonized CPTAC3 0b0fcf3d-7e8a-4dc6-856e-6c86f129ef7c 8cf19f3f038a2c6c6334b566426f7b04 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.RNA-Seq.genomic.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.genomic.gdc_realn.bam 8476261747 BAM genomic harmonized CPTAC3 14b0cfaa-c6e7-4ee9-84b6-b4c7efe91ae1 c7e367bd3d7559020a497371f6e55b46 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.RNA-Seq.S35_L006_R1.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R1_001.fastq.gz 4009177377 FASTQ S35_L006_R1 submitted_unaligned CPTAC3 671428b2-fc87-432e-9bbc-d2690fea4ec0 fa097c1134dea83e06b4cebb1e22cde2 {"aliquot_tag": "ALQ_e0ca815a", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.RNA-Seq.S35_L006_R2.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R2_001.fastq.gz 4733260248 FASTQ S35_L006_R2 submitted_unaligned CPTAC3 ca4c00d1-c8a6-4326-8e11-c02894955b93 df65615b341165f0068200216b709488 {"aliquot_tag": "ALQ_e0ca815a", "sample": "S35", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.RNA-Seq.transcriptome.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.transcriptome.gdc_realn.bam 9295673688 BAM transcriptome harmonized CPTAC3 afd7c1e9-b6b1-4010-ae3c-5a4484476c62 d711dc1bac7c4c558fd0526fbfe82071 {"aliquot_tag": "ALQ_e0ca815a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.WGS.Nbc C3L-01202 AML WGS buccal_normal CPT0166020003 CPT0166020003.WholeGenome.RP-1303.bam 71226752030 BAM submitted_aligned CPTAC3 212831ff-a243-416b-8d61-46dd8cdbcb8a 3aebfbd36374b266376d5ef29c29bc81 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01202.WGS.Nbc.hg38 C3L-01202 AML WGS buccal_normal CPT0166020003 1bb452c0-b720-4f49-a565-b4aae0d35af8_wgs_gdc_realn.bam 105629343475 BAM harmonized CPTAC3 dc06e74b-457a-466a-96eb-bae0b949c050 101c9835a06e028bad900c5d27d41870 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01202.WGS.Tbm C3L-01202 AML WGS tumor_bone_marrow CPT0165960002 CPT0165960002.WholeGenome.RP-1303.bam 66510350843 BAM submitted_aligned CPTAC3 edeaa0f0-0b05-4fa0-86c2-18f3ca66753e eed6ff9ce3099c5583156f0c660d7fd2 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.WGS.Tbm.hg38 C3L-01202 AML WGS tumor_bone_marrow CPT0165960002 eea66d9d-5e3f-4738-9bde-970a7b4c5365_wgs_gdc_realn.bam 95869349549 BAM harmonized CPTAC3 c4e035b2-76ee-4d67-843d-1f18990e3bb1 ed0cc36c7135fe31ab7f33e75ec4a777 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.WXS.Nbc C3L-01202 AML WXS buccal_normal CPT0166020003 CPT0166020003.WholeExome.RP-1303.bam 22704168968 BAM submitted_aligned CPTAC3 cb1fdf79-bd08-43b0-9e60-3e8a4351cf65 bbf8b0818b99f5b992574f3d2f83ffa6 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01202.WXS.Nbc.hg38 C3L-01202 AML WXS buccal_normal CPT0166020003 1bb452c0-b720-4f49-a565-b4aae0d35af8_wxs_gdc_realn.bam 31344317683 BAM harmonized CPTAC3 27a3e95a-5366-4bd7-949d-a684996b8f00 c27f3534a37bf870d2025dc3fd179636 {"aliquot_tag": "ALQ_49ca75e9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01202.WXS.Tbm C3L-01202 AML WXS tumor_bone_marrow CPT0165960002 CPT0165960002.WholeExome.RP-1303.bam 18187135593 BAM submitted_aligned CPTAC3 4d81aae4-3d53-46b6-a9cf-c03c950b61e1 10a8da47ef26e1ebe77bb15031c1b691 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01202.WXS.Tbm.hg38 C3L-01202 AML WXS tumor_bone_marrow CPT0165960002 eea66d9d-5e3f-4738-9bde-970a7b4c5365_wxs_gdc_realn.bam 25309624795 BAM harmonized CPTAC3 f646b462-2c4e-4530-a55a-0b86c3b28f3e 5cc01f191f82e7f2f1af0511dd4b1518 {"aliquot_tag": "ALQ_ddaaa8ea", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.MethArray.Green.Tbm C3L-01205 AML Methylation_Array tumor_bone_marrow CPT0166060002 203561450020_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0496a747-2b80-4a9d-ba5c-9bd215950dc4 e935f79707fd2a41932bd411923253cb {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.MethArray.Red.Tbm C3L-01205 AML Methylation_Array tumor_bone_marrow CPT0166060002 203561450020_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 8c24098b-aa96-4bee-8f5b-a25f970d2a0a 5518c59ba65114de794c0bde6ee1ab70 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.miRNA-Seq.S21_L001_R1.Tbm C3L-01205 AML miRNA-Seq tumor_bone_marrow CPT0166070002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTTTCG_S21_L001_R1_001.unaln.bam 149405344 BAM S21_L001_R1 submitted_unaligned CPTAC3 3785387e-4d09-4f75-aa0c-231f7e6f687c 8c5516987f8a77a2b25ad10f4c3814c0 {"aliquot_tag": "ALQ_f62dca0f", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.miRNA-Seq.Tbm.hg38 C3L-01205 AML miRNA-Seq tumor_bone_marrow CPT0166070002 98e6da3e-258a-4ed5-97e6-d569372a7ee3_mirnaseq_gdc_realn.bam 167273187 BAM harmonized CPTAC3 0a970929-4ebc-45cb-ad12-5b7b5f8448d6 8a888b4514c1b6b0ee8cf7892cb48bf9 {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.RNA-Seq.chimeric.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.chimeric.gdc_realn.bam 30297795 BAM chimeric harmonized CPTAC3 d156b2f0-8607-48e2-a571-a36cffea66e1 c98bd925e01c0523c72c8b3a0aa91300 {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.RNA-Seq.genomic.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.genomic.gdc_realn.bam 9912729752 BAM genomic harmonized CPTAC3 6590ba57-8695-4126-924c-6e9d488f990a b986eed777248df1a93b270ecd3c5add {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.RNA-Seq.S39_L007_R1.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R1_001.fastq.gz 4121313094 FASTQ S39_L007_R1 submitted_unaligned CPTAC3 ea097e68-4b09-4511-b477-a23aba708ea8 bf258dd5f35bd10ca355d6c697401a10 {"aliquot_tag": "ALQ_f62dca0f", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.RNA-Seq.S39_L007_R2.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R2_001.fastq.gz 4699564011 FASTQ S39_L007_R2 submitted_unaligned CPTAC3 204844aa-3ac0-4c3d-9e14-df05ac393091 15c740f7583e9bd77ce98c2077c00971 {"aliquot_tag": "ALQ_f62dca0f", "sample": "S39", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.RNA-Seq.transcriptome.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.transcriptome.gdc_realn.bam 10093508801 BAM transcriptome harmonized CPTAC3 2e96b365-7865-4aa8-a3d6-e9bbacf340b5 2e63c7017b08e4640ee7a98bbed66844 {"aliquot_tag": "ALQ_f62dca0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.WGS.Nbc C3L-01205 AML WGS buccal_normal CPT0166100002 CPT0166100002.WholeGenome.RP-1303.bam 92186318736 BAM submitted_aligned CPTAC3 a5bffa45-3250-4de7-a007-40c26069060d 2ee73e5ca5aebc0ad28fd602b32d28d0 {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01205.WGS.Nbc.hg38 C3L-01205 AML WGS buccal_normal CPT0166100002 63ed98ef-951d-4914-b17f-d6728cb962f3_wgs_gdc_realn.bam 181015257320 BAM harmonized CPTAC3 78af2650-07ba-4252-853f-22a0e4f310d5 d21259e224e8fb6d5d92e094ca01d0af {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01205.WGS.Tbm C3L-01205 AML WGS tumor_bone_marrow CPT0166060002 CPT0166060002.WholeGenome.RP-1303.bam 65860631035 BAM submitted_aligned CPTAC3 fd90b68b-d860-4e1d-9fef-f706b5b514e8 9693b703b858e4181c3e63529295753e {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.WGS.Tbm.hg38 C3L-01205 AML WGS tumor_bone_marrow CPT0166060002 f37cc409-ca73-4af1-8375-8d7be570de2f_wgs_gdc_realn.bam 97996923897 BAM harmonized CPTAC3 fadcb315-1cbc-498d-8835-f6828b2d3ee0 c0950e4510645a11bcbfec79e8655fd4 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.WXS.Nbc C3L-01205 AML WXS buccal_normal CPT0166100002 CPT0166100002.WholeExome.RP-1303.bam 18171519238 BAM submitted_aligned CPTAC3 c3a211c4-2ffb-40ca-8221-346d345701cb a9fb104306c3e019d2003a97777a2368 {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01205.WXS.Nbc.hg38 C3L-01205 AML WXS buccal_normal CPT0166100002 63ed98ef-951d-4914-b17f-d6728cb962f3_wxs_gdc_realn.bam 24951502465 BAM harmonized CPTAC3 671e95de-5f1a-4e05-8d45-2a0a3c129ea4 c13c8e6419a5f8117728a420dea928cc {"aliquot_tag": "ALQ_8f51c5ba", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01205.WXS.Tbm C3L-01205 AML WXS tumor_bone_marrow CPT0166060002 CPT0166060002.WholeExome.RP-1303.bam 23320952086 BAM submitted_aligned CPTAC3 59d47ce1-0a9f-400b-b735-8143a3689514 69956ed1007ac496cb16933817267c57 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01205.WXS.Tbm.hg38 C3L-01205 AML WXS tumor_bone_marrow CPT0166060002 f37cc409-ca73-4af1-8375-8d7be570de2f_wxs_gdc_realn.bam 33074466692 BAM harmonized CPTAC3 12cc671b-78a3-445f-835a-33611c8cd599 43861c3469f509b239078e54e020f9b2 {"aliquot_tag": "ALQ_cb4de3bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.MethArray.Green.Tbm C3L-01210 AML Methylation_Array tumor_bone_marrow CPT0166140002 203561450106_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 95481890-32e0-4bc9-b89a-954c0742b7fb 96a0fb499e8fe71f7e1a879676f5fafb {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.MethArray.Red.Tbm C3L-01210 AML Methylation_Array tumor_bone_marrow CPT0166140002 203561450106_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 47bb6375-8859-4fab-b190-62737a6bf05c b7863d9d3a9c05a8691c4e816aa48acd {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.miRNA-Seq.S22_L001_R1.Tbm C3L-01210 AML miRNA-Seq tumor_bone_marrow CPT0166150002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L001_R1_001.unaln.bam 192662894 BAM S22_L001_R1 submitted_unaligned CPTAC3 de24c088-fdd7-4713-99a7-63cfe077d51e 6116c5d190917008c67a6961820419a1 {"aliquot_tag": "ALQ_47b14aca", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.miRNA-Seq.Tbm.hg38 C3L-01210 AML miRNA-Seq tumor_bone_marrow CPT0166150002 cd251c3c-9410-471b-a3fe-d52bba236230_mirnaseq_gdc_realn.bam 214569311 BAM harmonized CPTAC3 ce541b35-86af-467f-9d50-bbf0d5276ebd 5f975b0c449b0287826db3f98b0af0ae {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.RNA-Seq.chimeric.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.chimeric.gdc_realn.bam 26113404 BAM chimeric harmonized CPTAC3 a88f9953-f024-4fdb-a677-1df1ec4f353c 97ddce89bd1f6f781ae34256a2b74c31 {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.RNA-Seq.genomic.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.genomic.gdc_realn.bam 6664865158 BAM genomic harmonized CPTAC3 18a2cc49-e01f-46dc-81ae-84d7b780c122 e25b5c6d4d5c997ba26944ef1236e878 {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.RNA-Seq.S40_L007_R1.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R1_001.fastq.gz 3096308737 FASTQ S40_L007_R1 submitted_unaligned CPTAC3 ee4ac6f0-8979-4910-89d3-2ce3de279076 bf329ee1ac4dc3d56d30ee1020274794 {"aliquot_tag": "ALQ_47b14aca", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.RNA-Seq.S40_L007_R2.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R2_001.fastq.gz 3567220988 FASTQ S40_L007_R2 submitted_unaligned CPTAC3 23dd19d7-e29c-458d-b8fb-fc639375381d 28fe84bb1afedb1313b5611cb734f29c {"aliquot_tag": "ALQ_47b14aca", "sample": "S40", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.RNA-Seq.transcriptome.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.transcriptome.gdc_realn.bam 8462795790 BAM transcriptome harmonized CPTAC3 a78e6e64-5256-4509-a4bd-cd0937f33733 c79a0968ef0640e4fac77ef664660e24 {"aliquot_tag": "ALQ_47b14aca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.WGS.Nbc C3L-01210 AML WGS buccal_normal CPT0166180003 CPT0166180003.WholeGenome.RP-1303.bam 95970148092 BAM submitted_aligned CPTAC3 0584d4d3-1164-4b64-80ca-86ebc698e668 a6b7cc95a4aba6a9d0bb0b4e36a50268 {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01210.WGS.Nbc.hg38 C3L-01210 AML WGS buccal_normal CPT0166180003 d211af53-0fe2-4296-986b-b469767aa8d4_wgs_gdc_realn.bam 147740708513 BAM harmonized CPTAC3 158d759d-6b3c-4dc3-a3d7-59930a885d0a 60b8162c037ac9d4746ea4f1ee525beb {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01210.WGS.Tbm C3L-01210 AML WGS tumor_bone_marrow CPT0166140002 CPT0166140002.WholeGenome.RP-1303.bam 71802167729 BAM submitted_aligned CPTAC3 3f642c86-8145-4b69-bec5-a1a769cfd6f9 0891f7206b110fca79fa206926d4e7bc {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.WGS.Tbm.hg38 C3L-01210 AML WGS tumor_bone_marrow CPT0166140002 a4379688-5a88-45a9-9856-d9a9bd56a53c_wgs_gdc_realn.bam 106084112316 BAM harmonized CPTAC3 3a8f7279-b2aa-4861-b5b2-6e49b38b6d78 ba6eb74ae373291d90b9b8a064598b03 {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.WXS.Nbc C3L-01210 AML WXS buccal_normal CPT0166180003 CPT0166180003.WholeExome.RP-1303.bam 27606034233 BAM submitted_aligned CPTAC3 17af10d2-35c1-43c7-a083-fd299f92e983 f2722e810ce00e10e78f3a13b6a7200e {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01210.WXS.Nbc.hg38 C3L-01210 AML WXS buccal_normal CPT0166180003 d211af53-0fe2-4296-986b-b469767aa8d4_wxs_gdc_realn.bam 38260840505 BAM harmonized CPTAC3 f122fdef-99c4-4d86-be9f-080233cf4113 bdc55a1ac16faeb3d85e483c53fef865 {"aliquot_tag": "ALQ_c826beed", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01210.WXS.Tbm C3L-01210 AML WXS tumor_bone_marrow CPT0166140002 CPT0166140002.WholeExome.RP-1303.bam 26883020796 BAM submitted_aligned CPTAC3 ea63cd67-5d17-403a-8a05-c7989ee996a9 d9bd33c9163f1cd8853c6338c5579059 {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01210.WXS.Tbm.hg38 C3L-01210 AML WXS tumor_bone_marrow CPT0166140002 a4379688-5a88-45a9-9856-d9a9bd56a53c_wxs_gdc_realn.bam 37173298863 BAM harmonized CPTAC3 b71ffbe9-4c35-49bc-958d-406ec97bfb7b 3ce4897e40274774e458bce454b08905 {"aliquot_tag": "ALQ_7ad1637a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01232.MethArray.Green.T C3L-01232 GBM Methylation_Array tumor CPT0239440006 204367490030_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 21235a2e-482a-4aad-abef-4875ab0ca191 bc96f40fefaa93539852a72d63cfd997 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.MethArray.Red.T C3L-01232 GBM Methylation_Array tumor CPT0239440006 204367490030_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 a2af8f4d-3709-46c3-819d-fc09ea4efe0e 167140dd9bd8138c41efe1144811f91f {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.miRNA-Seq.S18_L001_R1.T C3L-01232 GBM miRNA-Seq tumor CPT0239440013 200526_UNC32-K00270_0248_BHH7WFBBXY_TCATTC_S18_L001_R1_001.unaln.bam 221470799 BAM S18_L001_R1 submitted_unaligned CPTAC3 b69ad4d2-7b40-4777-8d11-b5aa1a525c36 6d53a2b2d6a7c1f97432fc15d6f1437d {"aliquot_tag": "ALQ_c325b156", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.miRNA-Seq.S21_L001_R1.T C3L-01232 GBM miRNA-Seq tumor CPT0239440013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCATTC_S21_L001_R1_001.unaln.bam 178837862 BAM S21_L001_R1 submitted_unaligned CPTAC3 8bd3ce56-9e85-4c4c-a91c-d38d324cdcdc 8fcb897efbc5f2b729c1ba23854bdeef {"aliquot_tag": "ALQ_c325b156", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.miRNA-Seq.T.hg38 C3L-01232 GBM miRNA-Seq tumor CPT0239440013 d7d2ec7d-2dd5-4495-a268-59b938e3b56a_mirnaseq_gdc_realn.bam 448941138 BAM harmonized CPTAC3 44b43e7e-3843-4584-9693-3992f1243359 404f58d97dd3fc86c55bebc9538d1c9a {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.RNA-Seq.chimeric.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.chimeric.gdc_realn.bam 25146666 BAM chimeric harmonized CPTAC3 e14a8f1b-705a-4e70-a4c0-e7b1e071e3ae 3566bac8655a02ec6107fee365f5ec75 {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.RNA-Seq.genomic.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.genomic.gdc_realn.bam 7910483374 BAM genomic harmonized CPTAC3 e41c6d41-29dc-478d-b421-d6e3cbe45ab9 cdc55996c4547a7a6823d69cee1f2242 {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.RNA-Seq.S16_L005_R1.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R1_001.fastq.gz 3741665722 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 1b412bf7-dfe6-46ce-8351-540dfc2698d5 ca430e7624c7f4e9558a2dfedf55dc57 {"aliquot_tag": "ALQ_c325b156", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.RNA-Seq.S16_L005_R2.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 64276f84-695c-4a6a-bde8-0b0378f17656 1d8674b8ac8a9674ea77abd5d143bf6a {"aliquot_tag": "ALQ_c325b156", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.RNA-Seq.transcriptome.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.transcriptome.gdc_realn.bam 9488608876 BAM transcriptome harmonized CPTAC3 0fd36f42-f9b2-4db8-8a91-1f5a8fe88e90 ce7b4c7693637e6e23dd0998cc9b5afe {"aliquot_tag": "ALQ_c325b156", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.WGS.N C3L-01232 GBM WGS blood_normal CPT0240430002 CPT0240430002.WholeGenome.RP-2158.bam 23484726875 BAM submitted_aligned CPTAC3 c3630728-631d-4c32-b3b8-4d764a9edc96 0501a0a077c2879fc992c60b8710eed5 {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01232.WGS.N.hg38 C3L-01232 GBM WGS blood_normal CPT0240430002 54352f31-de32-4a52-b0c0-1ab882496fc3_wgs_gdc_realn.bam 67565943172 BAM harmonized CPTAC3 c7777e0c-2447-4d47-aa47-e65bed9a8e47 9d4d7f696d14065132ceb994591df7fd {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01232.WGS.T C3L-01232 GBM WGS tumor CPT0239440006 CPT0239440006.WholeGenome.RP-2158.bam 25689260792 BAM submitted_aligned CPTAC3 62c0cb54-b429-4b6d-b1ef-4f0217a50eb0 6a8016adbd37a06820918b2e009b4f90 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.WGS.T.hg38 C3L-01232 GBM WGS tumor CPT0239440006 218349a8-16e2-4bcd-9c9a-690bc5152441_wgs_gdc_realn.bam 74541963072 BAM harmonized CPTAC3 7794e4ec-ebc2-40ca-9e51-a0a869ecc2be b6472a153f6389f17d1ac7d25bccdc55 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.WXS.N C3L-01232 GBM WXS blood_normal CPT0240430002 CPT0240430002.WholeExome.RP-1303.bam 32725473162 BAM submitted_aligned CPTAC3 543de157-2e71-4709-9fec-91f43bd4cc9e 71a55f8a3369b9970eb081f7274bb241 {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01232.WXS.N.hg38 C3L-01232 GBM WXS blood_normal CPT0240430002 54352f31-de32-4a52-b0c0-1ab882496fc3_wxs_gdc_realn.bam 45532138913 BAM harmonized CPTAC3 a65f1db8-170a-4ec2-a20b-e6deff964e2c b8c4d39e8261cbad80d47d1f3dbbc852 {"aliquot_tag": "ALQ_8044205b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01232.WXS.T C3L-01232 GBM WXS tumor CPT0239440006 CPT0239440006.WholeExome.RP-1303.bam 22882723649 BAM submitted_aligned CPTAC3 9983b071-cda4-4712-8dea-9f1a086c30a4 0f1f807ba4ae153aa8cd98468094ccbe {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01232.WXS.T.hg38 C3L-01232 GBM WXS tumor CPT0239440006 218349a8-16e2-4bcd-9c9a-690bc5152441_wxs_gdc_realn.bam 32795800931 BAM harmonized CPTAC3 6da28b7b-b148-4c49-97ee-d4587b058a46 66477eb21c6097aa8f16370738fcd0b0 {"aliquot_tag": "ALQ_aa547498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01237.MethArray.Green.A C3L-01237 HNSCC Methylation_Array tissue_normal CPT0199830006 203273200155_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7d9b376f-b14f-44de-8271-d469b55c8890 2590cafad4b7bcd5bb276191be239ec0 {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.MethArray.Green.T C3L-01237 HNSCC Methylation_Array tumor CPT0199820006 203219640047_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2e856fcc-39d2-490e-803d-75e0170e82e7 47c8d102baa488dc3c20af6e97c84527 {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.MethArray.Red.A C3L-01237 HNSCC Methylation_Array tissue_normal CPT0199830006 203273200155_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 4ce881d0-0896-49f4-817e-3cd737ebc658 a9ce64c35bc0c529568596dc97d00f6c {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.MethArray.Red.T C3L-01237 HNSCC Methylation_Array tumor CPT0199820006 203219640047_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 a1f0a4a6-324c-44ba-93c7-2d8a64b077d4 293a286fe7e62785e5066136a4ef38af {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.miRNA-Seq.A.hg38 C3L-01237 HNSCC miRNA-Seq tissue_normal CPT0199830009 32d13737-7523-4c63-bd82-b0e452aa1628_mirnaseq_gdc_realn.bam 305240772 BAM harmonized CPTAC3 e16723f4-70b7-4404-a53a-de99b83c01db d68c72d69e40a59fb56f49908ad8022d {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.miRNA-Seq.S14_L003_R1.A C3L-01237 HNSCC miRNA-Seq tissue_normal CPT0199830009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L003_R1_001.unaln.bam 273200637 BAM S14_L003_R1 submitted_unaligned CPTAC3 13c87f64-17e5-4f68-b046-7178eac7b35c 7aa425985525df7fbe2d8135e2d7c14f {"aliquot_tag": "ALQ_5744556f", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.miRNA-Seq.S5_L003_R1.T C3L-01237 HNSCC miRNA-Seq tumor CPT0199820009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L003_R1_001.unaln.bam 193206492 BAM S5_L003_R1 submitted_unaligned CPTAC3 16035066-497b-46f1-94ed-2a761311c475 eb5dd7da644857b8823334b80ad26f26 {"aliquot_tag": "ALQ_6a247cdf", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.miRNA-Seq.T.hg38 C3L-01237 HNSCC miRNA-Seq tumor CPT0199820009 eac8c70e-50cf-4c55-84da-0b782bb9d4b9_mirnaseq_gdc_realn.bam 212777769 BAM harmonized CPTAC3 a0451139-539c-4c25-a84a-fdcbeb2aeb47 5490fdea59b3bad28ad91b989cef5f83 {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.chimeric.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.chimeric.gdc_realn.bam 175136593 BAM chimeric harmonized CPTAC3 e1f68fc9-ac06-41b8-830b-6a6a1f1fc57f b8166404a55dc1c2a3c8b6a3f973bea9 {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.RNA-Seq.chimeric.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.chimeric.gdc_realn.bam 312811256 BAM chimeric harmonized CPTAC3 f474f41d-cc65-46da-b2c6-c5bc3e9fcca2 34f94dfc013bb0c4656cd0f95e6f246f {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.chimeric.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.chimeric.gdc_realn.bam 197864069 BAM chimeric harmonized CPTAC3 194e33b5-2d21-48e0-9611-f9c412df4047 f196e63030557521a4fe6c5ee1bb18ac {"aliquot_tag": "ALQ_f2a4300c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.genomic.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.genomic.gdc_realn.bam 7925658616 BAM genomic harmonized CPTAC3 593e9aa8-e42a-4cca-a447-fddeb351d809 cec675ee5d95f1bccfaa60558efba72e {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.RNA-Seq.genomic.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.genomic.gdc_realn.bam 7458178489 BAM genomic harmonized CPTAC3 e7d4b40f-3c5a-4c61-a5e2-05e56ff8387a 6ce3fd60140a68c7d382bd3ed67cd9b0 {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.genomic.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.genomic.gdc_realn.bam 10169150739 BAM genomic harmonized CPTAC3 9cbede46-1a61-4938-ba77-27a07dd51f80 c352ef3421557838cad300e8985fa12b {"aliquot_tag": "ALQ_f2a4300c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.S1_L001_R1.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R1_001.fastq.gz 3478633298 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 752226f3-1c80-431f-b226-0255a510059c 73986fcf62470ac6f72f0a2b8d037398 {"aliquot_tag": "ALQ_6a247cdf", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.S1_L001_R2.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R2_001.fastq.gz 3961895738 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 a071a665-427a-42db-9a57-085a46c8ff32 2ac2c2cd39b6d8c2a77e2d998899fc30 {"aliquot_tag": "ALQ_6a247cdf", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.S23_L006_R1.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R1_001.fastq.gz 3867848237 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 ba80215c-4900-4015-9279-3f316050e22e 0ca0d04a04a479b71dea4f8d835d3401 {"aliquot_tag": "ALQ_5744556f", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.RNA-Seq.S23_L006_R2.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R2_001.fastq.gz 4208634306 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 ed2d3b8d-4c33-4ae2-8372-37435993da2c ee1c651d045e92af7384f69897af498e {"aliquot_tag": "ALQ_5744556f", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.RNA-Seq.S69_R1.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R1_001.fastq.gz 6419510492 FASTQ S69_R1 submitted_unaligned CPTAC3 5ea19e8e-ebfc-490f-beac-c742feca0bfc 439bfc1b0885f432e985a29bda7034b3 {"aliquot_tag": "ALQ_f2a4300c", "sample": "S69", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.S69_R2.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R2_001.fastq.gz 6672477808 FASTQ S69_R2 submitted_unaligned CPTAC3 246ab387-5a7d-4d72-83f5-537cf75f7b7a 517a0c5ce253b7544be9fd489c9f5b1f {"aliquot_tag": "ALQ_f2a4300c", "sample": "S69", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.transcriptome.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.transcriptome.gdc_realn.bam 11581709075 BAM transcriptome harmonized CPTAC3 239a5ecd-0799-4b3d-9a84-5c2fa95f37e9 082af2ffd7fd53ac46320f10e147eaa3 {"aliquot_tag": "ALQ_5744556f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.RNA-Seq.transcriptome.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.transcriptome.gdc_realn.bam 9541506776 BAM transcriptome harmonized CPTAC3 bf5d4594-5826-43d0-8b7d-f8bfaa8f224f 39f3d83aa92bb1c65782ac5e6c6d6628 {"aliquot_tag": "ALQ_6a247cdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.RNA-Seq.transcriptome.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.transcriptome.gdc_realn.bam 6774165353 BAM transcriptome harmonized CPTAC3 cc499595-87f2-41ae-ac0f-6ab1e6f8a2f0 90a76829a3615aba21250843341abc5c {"aliquot_tag": "ALQ_f2a4300c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.WGS.N C3L-01237 HNSCC WGS blood_normal CPT0200410002 CPT0200410002.WholeGenome.RP-1303.bam 60530526355 BAM submitted_aligned CPTAC3 286fbb40-44ae-4b3f-8c20-baa1d9f3163d c754682142c9d7fb9dc3c30814bd45bb {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01237.WGS.N.hg38 C3L-01237 HNSCC WGS blood_normal CPT0200410002 ca8c763c-557a-4aa1-a964-de58741b0d53_wgs_gdc_realn.bam 91797654199 BAM harmonized CPTAC3 41d7d80d-8a51-4bd3-a74d-774a81f7d260 d78e4289662a66c0381a80b8256d2f15 {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01237.WGS.T C3L-01237 HNSCC WGS tumor CPT0199820006 CPT0199820006.WholeGenome.RP-1303.bam 72153751219 BAM submitted_aligned CPTAC3 d84bf169-4d32-430a-b32f-eae75dd09cf4 1bc27cccbbe013671cdc43ef95baf234 {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.WGS.T.hg38 C3L-01237 HNSCC WGS tumor CPT0199820006 7d484ca5-118e-4823-ab4e-255cac947459_wgs_gdc_realn.bam 109069239559 BAM harmonized CPTAC3 4ac05268-23c5-4dd9-933f-37598dccc518 fb62334c01af9bbc1df893a60fcebeac {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.WXS.A C3L-01237 HNSCC WXS tissue_normal CPT0199830006 CPT0199830006.WholeExome.RP-1303.bam 22954644192 BAM submitted_aligned CPTAC3 ba6b86c7-64d5-49c1-872a-934fd017862d f38bc4da9892cb4281ba169496f84bd1 {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.WXS.A.hg38 C3L-01237 HNSCC WXS tissue_normal CPT0199830006 ee7007f9-8e79-404b-837c-8add77c85a5a_wxs_gdc_realn.bam 31618396714 BAM harmonized CPTAC3 e9ae0d04-d833-4d6e-b9c5-835d4390d21a 9865a7d101d396ea785e1ce7719722cb {"aliquot_tag": "ALQ_c7fb48fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01237.WXS.N C3L-01237 HNSCC WXS blood_normal CPT0200410002 CPT0200410002.WholeExome.RP-1303.bam 34327237279 BAM submitted_aligned CPTAC3 744ae575-e04a-405a-aa5b-2955b17279fe d22830bcf064dd955f53e76ab21b62d6 {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01237.WXS.N.hg38 C3L-01237 HNSCC WXS blood_normal CPT0200410002 ca8c763c-557a-4aa1-a964-de58741b0d53_wxs_gdc_realn.bam 46705377151 BAM harmonized CPTAC3 40c6aa8c-c701-4687-af81-78a019003241 ffbeb39594fee8266d97216c0cc90d56 {"aliquot_tag": "ALQ_7ece7dc1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01237.WXS.T C3L-01237 HNSCC WXS tumor CPT0199820006 CPT0199820006.WholeExome.RP-1303.bam 27401634894 BAM submitted_aligned CPTAC3 d5e88461-e9b8-451b-a5ea-b875ced114db 8e431350f8248595766621e947c63355 {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01237.WXS.T.hg38 C3L-01237 HNSCC WXS tumor CPT0199820006 7d484ca5-118e-4823-ab4e-255cac947459_wxs_gdc_realn.bam 38025603063 BAM harmonized CPTAC3 81f3c16c-d03f-440d-9785-1f8b052761a7 ba3176f6782723454240a78409cb5d9e {"aliquot_tag": "ALQ_fa9b614e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.MethArray.Green.T C3L-01246 UCEC Methylation_Array tumor CPT0080980009 202176300111_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 90413679-a332-4fb0-8f65-c13ff2bffa89 fcd636d5c4aaba50a69b6ecdde4cb89f {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.MethArray.Red.T C3L-01246 UCEC Methylation_Array tumor CPT0080980009 202176300111_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 8c35ae7b-2ce1-4db5-b51c-1a280a017120 2ab8a2338f06f4ecea3ce37a6ea64c9d {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.miRNA-Seq.S34_L004_R1.T C3L-01246 UCEC miRNA-Seq tumor CPT0080980006 181113_UNC31-K00269_0164_AH23NNBBXY_TAGCTT_S34_L004_R1_001.unaln.bam 319432738 BAM S34_L004_R1 submitted_unaligned CPTAC3 f2788ac3-b71d-4165-beb8-2a9c6c38d27b 5bb15590615ad0c13010709110bfd648 {"aliquot_tag": "ALQ_353efb44", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.miRNA-Seq.T.hg38 C3L-01246 UCEC miRNA-Seq tumor CPT0080980006 ae6e918a-4d40-4f1b-b20e-01979b47a301_mirnaseq_gdc_realn.bam 355271067 BAM harmonized CPTAC3 bcc59900-98ac-48d6-b8d8-3a7a1f93406e a691160698e59645476c37a0e03231e4 {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.chimeric.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.chimeric.gdc_realn.bam 253405436 BAM chimeric harmonized CPTAC3 01341863-e08b-48af-9a19-08724dbabcac 4614d408a0bab49dcf713a653a1a4723 {"aliquot_tag": "ALQ_1307149f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.chimeric.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.chimeric.gdc_realn.bam 59133488 BAM chimeric harmonized CPTAC3 0fe31849-e387-4e8a-adfc-0a8b042d3af4 f2a52af636ddb0f5b00a8a966e978aa3 {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.genomic.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.genomic.gdc_realn.bam 10593869149 BAM genomic harmonized CPTAC3 315374fa-c01d-4eb1-9cc9-dca18969c40a 4ecbc3dbb98388928f66596db636b342 {"aliquot_tag": "ALQ_1307149f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.genomic.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.genomic.gdc_realn.bam 9778289174 BAM genomic harmonized CPTAC3 98adea27-0226-4877-b5dc-36bb65ee6101 a7fb33e8c7d0182f2338517b90420cce {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.S10_R1.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R1_001.fastq.gz 6159434659 FASTQ S10_R1 submitted_unaligned CPTAC3 8e4de314-c539-430b-8db6-0b930a1da13a 5bc646ffdaa34ad7d30a0995a9ff9c0a {"aliquot_tag": "ALQ_1307149f", "sample": "S10", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.S10_R2.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R2_001.fastq.gz 6427382071 FASTQ S10_R2 submitted_unaligned CPTAC3 9a421c93-4a5c-4612-835d-0eeffcbb0097 223f71f9ee30cd33215a0e8939db2e40 {"aliquot_tag": "ALQ_1307149f", "sample": "S10", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.S20_L005_R1.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4167982014 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 150efab8-0b73-4f1e-be49-e317b0d739ee a90d25cadf0d348bf0564667cda252d5 {"aliquot_tag": "ALQ_353efb44", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.S20_L005_R2.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4523805912 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 f5b7c2a1-9ed4-451e-880b-9ad37fda8ddb 57c86be853c9aae1c8023a7c4916b63b {"aliquot_tag": "ALQ_353efb44", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.transcriptome.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.transcriptome.gdc_realn.bam 7451176205 BAM transcriptome harmonized CPTAC3 27cb0e05-5942-46f4-a4ea-484c8616f032 fe18b5ca4dce68781a83e95ccf70c508 {"aliquot_tag": "ALQ_1307149f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.RNA-Seq.transcriptome.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.transcriptome.gdc_realn.bam 10935857645 BAM transcriptome harmonized CPTAC3 24d2ddaa-4d05-4658-b4da-d6d6c04e6352 a1e89d851b8e94eb22919a99ab6a1faf {"aliquot_tag": "ALQ_353efb44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.WGS.N C3L-01246 UCEC WGS blood_normal CPT0081030002 CPT0081030002.WholeGenome.RP-1303.bam 64234276853 BAM submitted_aligned CPTAC3 cdcde9e9-8922-4b0e-b36b-9d445b4b67cd a7d34f0dfc3a824e9a8c7941be50b080 {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01246.WGS.N.hg38 C3L-01246 UCEC WGS blood_normal CPT0081030002 69f5bb55-732f-438f-bd16-8a465e97d464_gdc_realn.bam 96605874864 BAM harmonized CPTAC3 2dac5fa1-c56c-4425-ba61-8270014816ca 4115a8d017852db6a1438074e2956768 {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01246.WGS.T C3L-01246 UCEC WGS tumor CPT0080980009 CPT0080980009.WholeGenome.RP-1303.bam 65828333887 BAM submitted_aligned CPTAC3 d62d5f7b-2d0e-4b5c-858b-cc973789062b 14aaeda6236ecaf2bfa9d45fb44f5b0f {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.WGS.T.hg38 C3L-01246 UCEC WGS tumor CPT0080980009 a1aa4887-909b-4409-a7cb-96399f56632b_gdc_realn.bam 99712788526 BAM harmonized CPTAC3 989fb585-18b1-4e94-8d2d-48cc86534d73 492ac628a0419a16bdccd60a9ee4278f {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.WXS.N C3L-01246 UCEC WXS blood_normal CPT0081030002 CPT0081030002.WholeExome.RP-1303.bam 34668655549 BAM submitted_aligned CPTAC3 2b17f82f-6232-45c1-8403-dfb743b7c345 8a6b49598f8b9e28f147fdb5ce8a9c83 {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01246.WXS.N.hg38 C3L-01246 UCEC WXS blood_normal CPT0081030002 69f5bb55-732f-438f-bd16-8a465e97d464_gdc_realn.bam 47916311931 BAM harmonized CPTAC3 e51f6394-96cc-4d48-954b-a578ccea4a6b 73fb34950a83aff4322f4325fd2e146f {"aliquot_tag": "ALQ_c4fb5430", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01246.WXS.T C3L-01246 UCEC WXS tumor CPT0080980009 CPT0080980009.WholeExome.RP-1303.bam 29063882736 BAM submitted_aligned CPTAC3 266bc8ac-06f0-4e08-a183-b089bc18a036 d61d4fd275706ac8f660c20fd5c12ea0 {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01246.WXS.T.hg38 C3L-01246 UCEC WXS tumor CPT0080980009 a1aa4887-909b-4409-a7cb-96399f56632b_gdc_realn.bam 40532055118 BAM harmonized CPTAC3 67ae0bf3-c217-40d2-9e0f-031c88d3d165 3d18ee08997e2c7b599225d7eb10bb66 {"aliquot_tag": "ALQ_a581e6d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.MethArray.Green.T C3L-01247 UCEC Methylation_Array tumor CPT0080700009 202163530120_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3879c664-2197-427f-a8a5-7676963cf63d f3fd0f1f542d73c762ae487f1a34425d {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.MethArray.Red.T C3L-01247 UCEC Methylation_Array tumor CPT0080700009 202163530120_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5dfec6de-ac1b-4c6b-91a4-2f01c18e7703 5dd2bec20feb3ca9bdbfcee9246dab2d {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.miRNA-Seq.S10_L001_R1.T C3L-01247 UCEC miRNA-Seq tumor CPT0080700006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L001_R1_001.unaln.bam 330031240 BAM S10_L001_R1 submitted_unaligned CPTAC3 3112196e-5604-4c28-b3f1-861cd110a85c c0d7079a977c1297bb6bcf69f2adbd11 {"aliquot_tag": "ALQ_3f44d1f5", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.miRNA-Seq.T.hg38 C3L-01247 UCEC miRNA-Seq tumor CPT0080700006 a025ecc5-b0de-4d11-b983-72db1443df67_mirnaseq_gdc_realn.bam 376859508 BAM harmonized CPTAC3 b7ff4e1c-7ef1-4b8e-b2b2-ad311d5ecd46 9631344185d37ac5bf3458a7ebf9a34f {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.RNA-Seq.chimeric.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.chimeric.gdc_realn.bam 73723520 BAM chimeric harmonized CPTAC3 daa49622-d7cb-4fcf-a3ee-b325ce3008a6 faea94bfbe9c2a08f465a7e1edffd4b3 {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.RNA-Seq.genomic.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.genomic.gdc_realn.bam 10011589989 BAM genomic harmonized CPTAC3 42f3d3e5-ffec-4314-a9b6-4d09df5d17e5 c82664543be70869ceec11999a367d25 {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.RNA-Seq.S18_L005_R1.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4439511718 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 20f8e780-92e0-43e6-b7a4-6e84f39235c8 00dff419075951f9894a19708c4a94bd {"aliquot_tag": "ALQ_3f44d1f5", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.RNA-Seq.S18_L005_R2.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4823429751 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 340e18d4-ab3f-4a19-8efa-19a46955ea2f 56e8d20e4f9af8cc49dc39f53d26c6b2 {"aliquot_tag": "ALQ_3f44d1f5", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.RNA-Seq.transcriptome.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.transcriptome.gdc_realn.bam 10926972606 BAM transcriptome harmonized CPTAC3 07729ccc-3096-498b-8b2c-f019df1a56a6 218bae9b316a8b3f0ab19761a3bd8635 {"aliquot_tag": "ALQ_3f44d1f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.WGS.N C3L-01247 UCEC WGS blood_normal CPT0080800002 CPT0080800002.WholeGenome.RP-1303.bam 67754672037 BAM submitted_aligned CPTAC3 bad4aa98-ea70-474a-988b-da532dc8b98b 6a0443389c9b8c5e858e86376cc733bf {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01247.WGS.N.hg38 C3L-01247 UCEC WGS blood_normal CPT0080800002 75350a75-f96e-4de2-a8df-44298992a35d_gdc_realn.bam 103329625643 BAM harmonized CPTAC3 9a71ebf5-d978-4980-8894-e3b597321b3f 88bb68283cc9bab95a50cceacdc8eeac {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01247.WGS.T C3L-01247 UCEC WGS tumor CPT0080700009 CPT0080700009.WholeGenome.RP-1303.bam 62033902946 BAM submitted_aligned CPTAC3 6a24e69e-ff0b-4265-8721-cf3e574cd602 2fb45f62d9385dab7955f43e8a807c3b {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.WGS.T.hg38 C3L-01247 UCEC WGS tumor CPT0080700009 18a5e367-653a-430f-95b3-4d6b504e6c55_gdc_realn.bam 92783302296 BAM harmonized CPTAC3 f8d1546e-8793-48a7-9853-31626061778f a11e6325b28852f5e6b405ae54138457 {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.WXS.N C3L-01247 UCEC WXS blood_normal CPT0080800002 CPT0080800002.WholeExome.RP-1303.bam 38353017139 BAM submitted_aligned CPTAC3 042952fd-d733-4298-bd7e-804f68a03328 de85fff50f944a078cb70ae686f6f99f {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01247.WXS.N.hg38 C3L-01247 UCEC WXS blood_normal CPT0080800002 75350a75-f96e-4de2-a8df-44298992a35d_gdc_realn.bam 53013036861 BAM harmonized CPTAC3 7e9c5ca9-4e5b-475a-b3f9-beb59939743b 63e6c565f00ee2c93ae574b6691de9a5 {"aliquot_tag": "ALQ_c97fa739", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01247.WXS.T C3L-01247 UCEC WXS tumor CPT0080700009 CPT0080700009.WholeExome.RP-1303.bam 28961376728 BAM submitted_aligned CPTAC3 8dea3157-8e37-4333-b9cc-6ced8fc244ec 75375a5d7763b73c83aa59b4849dbfef {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01247.WXS.T.hg38 C3L-01247 UCEC WXS tumor CPT0080700009 18a5e367-653a-430f-95b3-4d6b504e6c55_gdc_realn.bam 39899925042 BAM harmonized CPTAC3 faab2e37-4298-4c8d-9e97-f916b328eb3a 0ce56a16cee33e071bf0ef0f7089bd13 {"aliquot_tag": "ALQ_affbcc64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.MethArray.Green.T C3L-01248 UCEC Methylation_Array tumor CPT0080300006 202176300039_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d55dee16-fa74-4072-8277-7ca710b2636d 0f7b52a10f6e8f6f24a311b897455277 {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.MethArray.Red.T C3L-01248 UCEC Methylation_Array tumor CPT0080300006 202176300039_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 93e53802-e409-4f85-aa0f-f91acddefe3b 465b6ca75d1a8e2642d371e338df219f {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.miRNA-Seq.S12_L006_R1.T C3L-01248 UCEC miRNA-Seq tumor CPT0080300009 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L006_R1_001.unaln.bam 257802616 BAM S12_L006_R1 submitted_unaligned CPTAC3 64e6b0d9-4419-4c88-8aa9-0c3cc1a7951b d07b8326331751194c40df1bc0f15c64 {"aliquot_tag": "ALQ_346a8e72", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.miRNA-Seq.T.hg38 C3L-01248 UCEC miRNA-Seq tumor CPT0080300009 5019e699-3871-4164-91c8-19d0db444516_mirnaseq_gdc_realn.bam 292439770 BAM harmonized CPTAC3 148b1b55-582d-4dd2-8e74-32bde1376918 d5847959be90e291396f14cc8db58e0c {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.chimeric.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.chimeric.gdc_realn.bam 134273161 BAM chimeric harmonized CPTAC3 fb368ce1-bf7e-4c42-abd7-50402cd229d0 b247fc000c82ffa6a4ff299e78760e3b {"aliquot_tag": "ALQ_c19d9e24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.chimeric.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.chimeric.gdc_realn.bam 37652055 BAM chimeric harmonized CPTAC3 e1ca580e-59e6-4a2f-82b5-96bf1f3249fe d6fa913b532a5d0630e15908f46d184a {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.genomic.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.genomic.gdc_realn.bam 7340244385 BAM genomic harmonized CPTAC3 b4ea4663-634d-45bf-a0e2-50b25355c922 e9724059e48a8914925a6f74e0d0a650 {"aliquot_tag": "ALQ_c19d9e24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.genomic.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.genomic.gdc_realn.bam 9607548448 BAM genomic harmonized CPTAC3 28e3d8d7-cabd-49be-9109-a1a894916fb0 a3627405cb8e38ed509a866cbbab385f {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.S24_L006_R1.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R1_001.fastq.gz 4011901122 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 f19a6801-b116-4e0d-b755-5f72f604f648 50c29a95b28c6f7462b867aa0c65af7f {"aliquot_tag": "ALQ_346a8e72", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.S24_L006_R2.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4207615645 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 848dfac4-6067-4a87-8e2c-887b5e4a3272 68df1714ba940d7ddff0150fddaa71a1 {"aliquot_tag": "ALQ_346a8e72", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.S51_R1.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R1_001.fastq.gz 5200763996 FASTQ S51_R1 submitted_unaligned CPTAC3 93ce543e-b959-4850-8a56-834233adbb89 5f3374f08623680080bc752408eabd1d {"aliquot_tag": "ALQ_c19d9e24", "sample": "S51", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.S51_R2.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R2_001.fastq.gz 5328946655 FASTQ S51_R2 submitted_unaligned CPTAC3 189e1a4a-71bc-4175-9118-531dc6ceef62 294e27a543d2d4985c9aa2dcc798fe47 {"aliquot_tag": "ALQ_c19d9e24", "sample": "S51", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.transcriptome.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.transcriptome.gdc_realn.bam 5147730555 BAM transcriptome harmonized CPTAC3 2333a8df-892e-4c67-b833-f6e2da61e5dc a1d166374431af06fbaf4a5e4dda530b {"aliquot_tag": "ALQ_c19d9e24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.RNA-Seq.transcriptome.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.transcriptome.gdc_realn.bam 11269096203 BAM transcriptome harmonized CPTAC3 1cd59efe-8e81-46f3-9ecd-75d7c987774b ebe55204c98120161f4d0f80e3379d30 {"aliquot_tag": "ALQ_346a8e72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.WGS.N C3L-01248 UCEC WGS blood_normal CPT0080340001 CPT0080340001.WholeGenome.RP-1303.bam 79987862462 BAM submitted_aligned CPTAC3 25a020c8-6c7c-482f-89ef-a5782cf926d0 332b3c2d92ff0bbb5318e7144d9feff7 {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01248.WGS.N.hg38 C3L-01248 UCEC WGS blood_normal CPT0080340001 4524e78f-96c8-41f1-a6a8-e96abbd54c27_gdc_realn.bam 119266584582 BAM harmonized CPTAC3 9aae580f-d6ae-4920-8e2f-a249be96c57f 46f69fbe05a286462854f1d532731546 {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01248.WGS.T C3L-01248 UCEC WGS tumor CPT0080300006 CPT0080300006.WholeGenome.RP-1303.bam 72735805423 BAM submitted_aligned CPTAC3 972f7751-3152-4642-9553-ec70ee3c20be 36f55e7d767aa45b07c5c411fb69788b {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.WGS.T.hg38 C3L-01248 UCEC WGS tumor CPT0080300006 e014ed4a-7325-4e39-b236-f63b6a17e319_gdc_realn.bam 110751611067 BAM harmonized CPTAC3 3aa26966-41cf-4ab9-9446-0e19fa01b054 62e83991fa3a7d0ab61983d5b6859e08 {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.WXS.N C3L-01248 UCEC WXS blood_normal CPT0080340001 CPT0080340001.WholeExome.RP-1303.bam 25984881494 BAM submitted_aligned CPTAC3 6c3c775a-35d5-4418-84c1-9e6421287e19 181ba2e9c864b4ea24a7c0475cb67f0d {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01248.WXS.N.hg38 C3L-01248 UCEC WXS blood_normal CPT0080340001 4524e78f-96c8-41f1-a6a8-e96abbd54c27_gdc_realn.bam 35106770520 BAM harmonized CPTAC3 2b85a1a0-d4be-4eb0-9424-4ad4d38c853e 95b0b35d0cf679f12a14673eba1b6418 {"aliquot_tag": "ALQ_cf31a080", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01248.WXS.T C3L-01248 UCEC WXS tumor CPT0080300006 CPT0080300006.WholeExome.RP-1303.bam 33766570479 BAM submitted_aligned CPTAC3 9da0f4ae-f3e7-4e37-b1fc-b16f7b0600d7 f4915740beca0641d08465ebc598fadc {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01248.WXS.T.hg38 C3L-01248 UCEC WXS tumor CPT0080300006 e014ed4a-7325-4e39-b236-f63b6a17e319_gdc_realn.bam 45868541197 BAM harmonized CPTAC3 ec333f4b-3db0-4c11-a38f-4795b11bb47f 79b2e181d86f0e1c6081670cf6e165df {"aliquot_tag": "ALQ_a4d593e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.MethArray.Green.T C3L-01249 UCEC Methylation_Array tumor CPT0080880009 202176290087_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9a8c7065-b5a6-4c4a-b221-fcd0903a00c3 19497ccb50d3720e3d095ceb5ee0b840 {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.MethArray.Red.T C3L-01249 UCEC Methylation_Array tumor CPT0080880009 202176290087_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 959a6d62-520c-4488-bef8-04f0bc93280e 5cc68c39fc15cb574beb8742600e960d {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.miRNA-Seq.S14_L005_R1.T C3L-01249 UCEC miRNA-Seq tumor CPT0080880006 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L005_R1_001.unaln.bam 210911662 BAM S14_L005_R1 submitted_unaligned CPTAC3 f8c868fc-848d-4614-9c91-20bbb327e8cc b9731b2f811ea1249ed75a136799b135 {"aliquot_tag": "ALQ_fe6228e1", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.miRNA-Seq.T.hg38 C3L-01249 UCEC miRNA-Seq tumor CPT0080880006 89ace656-6665-44bf-8fe3-9d0e425565e5_mirnaseq_gdc_realn.bam 226570494 BAM harmonized CPTAC3 d00f1386-e3dd-4d60-97f5-5c0f8248589e 5d004562f19ea0e420fd12cbaf9b18da {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.chimeric.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.chimeric.gdc_realn.bam 178842707 BAM chimeric harmonized CPTAC3 9c1847bd-8033-4597-aaf5-a3b8e63f8f9e 1abe6286546f2fbd78ab42e26c227b69 {"aliquot_tag": "ALQ_df360323", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.chimeric.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.chimeric.gdc_realn.bam 57854177 BAM chimeric harmonized CPTAC3 3e444495-b96f-46b5-b75c-5fc26876f792 201ecccd88d33bea2d3a8016256f6a16 {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.genomic.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.genomic.gdc_realn.bam 8693213991 BAM genomic harmonized CPTAC3 ea260d31-bdec-4e72-8425-61c3f2346c6f 0b1040f7f781161d9d8a58f37110470e {"aliquot_tag": "ALQ_df360323", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.genomic.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.genomic.gdc_realn.bam 10982393783 BAM genomic harmonized CPTAC3 31927cca-d2a1-4852-a3b8-1997e191ecf3 7fdb61bf2f73957aa03e63c25baf41f8 {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.S17_L005_R1.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4071816231 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 5bdc0383-216a-479a-b641-502eed2b241a 7edca60bb008ac919de7f6f6ce6be663 {"aliquot_tag": "ALQ_fe6228e1", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.S17_L005_R2.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4558825534 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 1e55bad8-2e97-4693-9859-81d5834c997f a05b68dac5618c6b0d3a230d5dad71a7 {"aliquot_tag": "ALQ_fe6228e1", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.S27_R1.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R1_001.fastq.gz 5458667756 FASTQ S27_R1 submitted_unaligned CPTAC3 1d4175fb-198a-4096-bcbc-bc419aa0339a d437fa122b94283e8e210bbc0af50396 {"aliquot_tag": "ALQ_df360323", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.S27_R2.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R2_001.fastq.gz 5640350978 FASTQ S27_R2 submitted_unaligned CPTAC3 3adfd2e8-60a7-428d-9bf1-a587d087adf4 39af81948c62b326e6afaa4028703c47 {"aliquot_tag": "ALQ_df360323", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.transcriptome.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.transcriptome.gdc_realn.bam 6538790482 BAM transcriptome harmonized CPTAC3 a46ad20f-1760-4cb2-bb2d-3b50dc7b1e98 1708f0aac657f0907d5a7fa8f06eae5e {"aliquot_tag": "ALQ_df360323", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.RNA-Seq.transcriptome.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.transcriptome.gdc_realn.bam 9997713022 BAM transcriptome harmonized CPTAC3 aed58eb1-f945-4791-b63f-9d1cbab8c7db 48502fefdf49e239cb171c5c021db1dc {"aliquot_tag": "ALQ_fe6228e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.WGS.N C3L-01249 UCEC WGS blood_normal CPT0080920002 CPT0080920002.WholeGenome.RP-1303.bam 69641060479 BAM submitted_aligned CPTAC3 ad5d34b4-11e4-41b5-97c4-f55c899dd358 cb9d272e13f9a213cb313ef3f7fad48e {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01249.WGS.N.hg38 C3L-01249 UCEC WGS blood_normal CPT0080920002 a9dfb9b8-ccc8-4c7f-8658-9bc8098e270e_gdc_realn.bam 108062107807 BAM harmonized CPTAC3 04c9b457-112e-4e52-ac06-eac47fa8a994 18ba9fd14b64e9124ffa559c5652a3d8 {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01249.WGS.T C3L-01249 UCEC WGS tumor CPT0080880009 CPT0080880009.WholeGenome.RP-1303.bam 62482099576 BAM submitted_aligned CPTAC3 9c0416f0-d281-4bc0-9e88-b87665e25287 f1e1579ea4814af41cb110bf9db9ea90 {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.WGS.T.hg38 C3L-01249 UCEC WGS tumor CPT0080880009 03268ce1-fb36-4573-ae32-127e717098ac_gdc_realn.bam 93325953219 BAM harmonized CPTAC3 cfac3e22-503c-461b-82b7-95451aa8dcf3 97ae537a40ff3fa1f449e4f8b9cc65c5 {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.WXS.N C3L-01249 UCEC WXS blood_normal CPT0080920002 CPT0080920002.WholeExome.RP-1303.bam 38090435822 BAM submitted_aligned CPTAC3 33dbc85d-be68-4786-9ad8-967e528491d3 81b6f1268ba9287f7bac230201534d37 {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01249.WXS.N.hg38 C3L-01249 UCEC WXS blood_normal CPT0080920002 a9dfb9b8-ccc8-4c7f-8658-9bc8098e270e_gdc_realn.bam 52485968783 BAM harmonized CPTAC3 806818d2-ac05-4017-a2f5-56b1cd9f8c22 4a7325f7d8cc4ca8f932269f4a1733d9 {"aliquot_tag": "ALQ_78e327fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01249.WXS.T C3L-01249 UCEC WXS tumor CPT0080880009 CPT0080880009.WholeExome.RP-1303.bam 36969305378 BAM submitted_aligned CPTAC3 c5e6c695-c1ff-48bf-af3d-18e2d48347c3 a2b2942483c7ff3a87479a6855dc5dcd {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01249.WXS.T.hg38 C3L-01249 UCEC WXS tumor CPT0080880009 03268ce1-fb36-4573-ae32-127e717098ac_gdc_realn.bam 50456795195 BAM harmonized CPTAC3 cf4aa5f9-c779-4b63-a58a-11b5bcf1365c 8bd55d6bb39854b12f409e8a43534bca {"aliquot_tag": "ALQ_6edd3570", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.MethArray.Green.T C3L-01252 UCEC Methylation_Array tumor CPT0080610009 202184900111_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 08233026-5b15-465b-b42d-45f201da7790 700303e8a5734f2620ca6b462879f980 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.MethArray.Red.T C3L-01252 UCEC Methylation_Array tumor CPT0080610009 202184900111_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 10514250-40d1-483e-a501-fa4eec5399cf 7359237721159c2e14646e516e8f0a28 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.miRNA-Seq.S9_L001_R1.T C3L-01252 UCEC miRNA-Seq tumor CPT0080610006 181012_UNC32-K00270_0124_AH223CBBXY_CCAACA_S9_L001_R1_001.unaln.bam 251820717 BAM S9_L001_R1 submitted_unaligned CPTAC3 9a2d5576-502d-4d16-a488-c33670ed521b 0e954d6b646c35edb93b6a46ba389dae {"aliquot_tag": "ALQ_c9782be0", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.miRNA-Seq.T.hg38 C3L-01252 UCEC miRNA-Seq tumor CPT0080610006 f9adcd01-545e-4802-8164-4691fd1237c8_mirnaseq_gdc_realn.bam 283330891 BAM harmonized CPTAC3 20593497-5cf9-4cd0-a99d-b6a531d813f8 2eae90d921fbce9699eebac811eae602 {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.chimeric.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.chimeric.gdc_realn.bam 157905783 BAM chimeric harmonized CPTAC3 0a57b77a-1051-4da7-a6e3-b8c7211f2c41 411f44c76debb096eba4cbf949a3cae8 {"aliquot_tag": "ALQ_e1f8872c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.chimeric.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.chimeric.gdc_realn.bam 38694690 BAM chimeric harmonized CPTAC3 50d19882-897a-4652-90a9-efa495e7b8be 80063419b46128b84b59735463571018 {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.genomic.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.genomic.gdc_realn.bam 7032996467 BAM genomic harmonized CPTAC3 312ab9c6-0597-46e7-a156-d6a0c4a5070f 08e371c9e63b9c02a2698195cf45c09e {"aliquot_tag": "ALQ_e1f8872c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.genomic.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.genomic.gdc_realn.bam 7111648119 BAM genomic harmonized CPTAC3 f90a0c31-ab89-4454-8a94-e7ee3331fbab b20a1882b242ff51f9ce71d47064167b {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.S19_L005_R1.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3161984688 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 d36d42d2-afb4-4098-bac2-2c0d503c2f67 dba1d6c262220e1371b36688618bce98 {"aliquot_tag": "ALQ_c9782be0", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.S19_L005_R2.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3432877942 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 992384ee-8c0e-4c30-8732-561df93e281a 2e391643618800eccaf568786060e977 {"aliquot_tag": "ALQ_c9782be0", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.S71_R1.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R1_001.fastq.gz 3972718635 FASTQ S71_R1 submitted_unaligned CPTAC3 e78da239-1ee6-4300-b765-3645b33c77c3 4faa2ad97e139e14bf5c344555f07a32 {"aliquot_tag": "ALQ_e1f8872c", "sample": "S71", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.S71_R2.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R2_001.fastq.gz 4065574970 FASTQ S71_R2 submitted_unaligned CPTAC3 e0c4ba9d-44ae-4f26-81d3-a8b1c715fa2f 4d8183b3278042304eaf984cdb8cd0b7 {"aliquot_tag": "ALQ_e1f8872c", "sample": "S71", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.transcriptome.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.transcriptome.gdc_realn.bam 3091923725 BAM transcriptome harmonized CPTAC3 3e794f69-c637-4c3d-afdb-9c38bb7aff9c 52dd5c25794ee1dd924db3d608c15b75 {"aliquot_tag": "ALQ_e1f8872c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.RNA-Seq.transcriptome.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.transcriptome.gdc_realn.bam 7475567129 BAM transcriptome harmonized CPTAC3 ab817c77-d856-4e08-9600-b429d549cdc6 0a9d7f047655c0c4b688af20ce72d1ec {"aliquot_tag": "ALQ_c9782be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.WGS.N C3L-01252 UCEC WGS blood_normal CPT0080660002 CPT0080660002.WholeGenome.RP-1303.bam 63347976899 BAM submitted_aligned CPTAC3 c48c0495-bdfc-4133-9094-e61a2ad71eb2 35812c1b2e69cab30d6a7ec03381988a {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01252.WGS.N.hg38 C3L-01252 UCEC WGS blood_normal CPT0080660002 a7a105df-d4f7-4bef-87b3-01819d8bcf0b_gdc_realn.bam 94343461651 BAM harmonized CPTAC3 b738031e-17f5-4a3d-b10e-963d5cc0eab8 0d153e4b04e65d59af2be4ed86456169 {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01252.WGS.T C3L-01252 UCEC WGS tumor CPT0080610009 CPT0080610009.WholeGenome.RP-1303.bam 65191313280 BAM submitted_aligned CPTAC3 efa92c27-f019-42d8-80ff-22f192d8be50 6d1535eb454b11f01d0425097e69214d {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.WGS.T.hg38 C3L-01252 UCEC WGS tumor CPT0080610009 006c3a0a-73c6-45b5-9520-cffaf0a8cbff_gdc_realn.bam 98043168966 BAM harmonized CPTAC3 0a71692b-69f2-4d45-9740-59e1b1025326 188d093b870c55c186610d8d04407439 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.WXS.N C3L-01252 UCEC WXS blood_normal CPT0080660002 CPT0080660002.WholeExome.RP-1303.bam 31717353456 BAM submitted_aligned CPTAC3 107f1193-5129-4ebc-a826-cb3619de39b7 caa140385bccc3692f001cd8bd6ceb5a {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01252.WXS.N.hg38 C3L-01252 UCEC WXS blood_normal CPT0080660002 a7a105df-d4f7-4bef-87b3-01819d8bcf0b_gdc_realn.bam 43066284618 BAM harmonized CPTAC3 ca598d4d-9330-4293-9d63-45a5a19c02db d0d28a6e38833c82632426ddff82cd1b {"aliquot_tag": "ALQ_7c3533e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01252.WXS.T C3L-01252 UCEC WXS tumor CPT0080610009 CPT0080610009.WholeExome.RP-1303.bam 33791445822 BAM submitted_aligned CPTAC3 408d28c0-f5ef-4f57-8f2b-58203af65413 c85de98576ca33473735886a0487f5d0 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01252.WXS.T.hg38 C3L-01252 UCEC WXS tumor CPT0080610009 006c3a0a-73c6-45b5-9520-cffaf0a8cbff_gdc_realn.bam 46981368893 BAM harmonized CPTAC3 fcd8e9ca-8399-4824-9e79-e6c582f7dc53 c85f2035976259f364e443eebb523e59 {"aliquot_tag": "ALQ_59c73671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.MethArray.Green.T C3L-01253 UCEC Methylation_Array tumor CPT0080400009 202176290046_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 30a1bb1b-911d-4372-a0d1-83f57fc80d43 58a7383e89fdf76b094c652538c6ebad {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.MethArray.Red.T C3L-01253 UCEC Methylation_Array tumor CPT0080400009 202176290046_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a3195d6e-24cc-4fce-a714-b51ea3ac7235 6277f91b12fca4bd44823c06e65c906d {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.miRNA-Seq.S8_L001_R1.T C3L-01253 UCEC miRNA-Seq tumor CPT0080400006 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L001_R1_001.unaln.bam 521394542 BAM S8_L001_R1 submitted_unaligned CPTAC3 a01f2e15-a2e2-43a0-a1f9-1c6ea955ceb4 3d449ba9814bcc2cb19b9920ef0066a4 {"aliquot_tag": "ALQ_b9d0a35b", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.miRNA-Seq.T.hg38 C3L-01253 UCEC miRNA-Seq tumor CPT0080400006 16a16f75-33a5-4160-9435-92686a4dc20d_mirnaseq_gdc_realn.bam 606421909 BAM harmonized CPTAC3 5d696a15-b436-4a0f-8be4-8e0feba3f69e e6281ea1548657cec57423a7f3204f3e {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.RNA-Seq.chimeric.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.chimeric.gdc_realn.bam 52348636 BAM chimeric harmonized CPTAC3 f85dd2ee-2fd8-4e0f-ae74-6b6e0161d9d4 8dbbe5e3c7afff9996de6113c0bcf515 {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.RNA-Seq.genomic.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.genomic.gdc_realn.bam 8544852998 BAM genomic harmonized CPTAC3 9a8e751d-8788-4764-bbd9-adc0952709d4 4099ba7972aad850851eabd0536687ea {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.RNA-Seq.S24_L006_R1.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3839033718 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 947060cd-6c80-47b7-8330-3b0d802d9d50 bbc181db753aeea14e4faa9662211276 {"aliquot_tag": "ALQ_b9d0a35b", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.RNA-Seq.S24_L006_R2.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4206420875 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 430e7fee-c564-4b6d-9c18-3249e79c57d1 ed47e1d2b44c6f028bb619bb1a4dffc5 {"aliquot_tag": "ALQ_b9d0a35b", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.RNA-Seq.transcriptome.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.transcriptome.gdc_realn.bam 9606319162 BAM transcriptome harmonized CPTAC3 e206cca9-3ff7-4d3d-a21d-a31d8a92c251 8fed546c5f20713295b0641a03701b6b {"aliquot_tag": "ALQ_b9d0a35b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.WGS.N C3L-01253 UCEC WGS blood_normal CPT0080440002 CPT0080440002.WholeGenome.RP-1303.bam 82233081012 BAM submitted_aligned CPTAC3 f454962f-9d2b-4adc-8462-874506a367b6 330ff46fad8665b0e9034b54000ccf41 {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01253.WGS.N.hg38 C3L-01253 UCEC WGS blood_normal CPT0080440002 0ccc9616-79cc-4ff5-b33b-2eac15b4078d_gdc_realn.bam 124998072987 BAM harmonized CPTAC3 b5ce9048-1883-4704-9b11-e8ac3738a5e9 daa0f972fdb2d8e83800866ef8fef88b {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01253.WGS.T C3L-01253 UCEC WGS tumor CPT0080400009 CPT0080400009.WholeGenome.RP-1303.bam 65285678740 BAM submitted_aligned CPTAC3 28e3a9ca-be71-45fd-af41-44b17398265f 572e45e19af09e3aa11c5e5cc0c2d87c {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.WGS.T.hg38 C3L-01253 UCEC WGS tumor CPT0080400009 a22d7330-2df5-4cad-9469-65de69d006eb_gdc_realn.bam 97355867158 BAM harmonized CPTAC3 dc7fc77c-0ce3-4ae4-9800-583943850fe9 d169ec156465c76620e4660f607d76d1 {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.WXS.N C3L-01253 UCEC WXS blood_normal CPT0080440002 CPT0080440002.WholeExome.RP-1303.bam 34875474480 BAM submitted_aligned CPTAC3 1f4b8c6c-efac-49b0-a09c-7c8eced9bc5e 90e247df493ae0dc2e99a9bb9380a97d {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01253.WXS.N.hg38 C3L-01253 UCEC WXS blood_normal CPT0080440002 0ccc9616-79cc-4ff5-b33b-2eac15b4078d_gdc_realn.bam 47833112363 BAM harmonized CPTAC3 b0341a83-609c-4901-ba96-f76af59d0ec9 b0ae4e9fbe8aea88f775bd4db25d7772 {"aliquot_tag": "ALQ_4b3dc182", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01253.WXS.T C3L-01253 UCEC WXS tumor CPT0080400009 CPT0080400009.WholeExome.RP-1303.bam 32459559994 BAM submitted_aligned CPTAC3 bfc5eee1-fa36-4b16-990a-a7ab210b093f 508aa04027b31a12f2ee623a8ce81147 {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01253.WXS.T.hg38 C3L-01253 UCEC WXS tumor CPT0080400009 a22d7330-2df5-4cad-9469-65de69d006eb_gdc_realn.bam 45088213611 BAM harmonized CPTAC3 b35bb305-3e5f-450b-b7d7-53063757be27 549bf32623291df352ead23887d4bcb8 {"aliquot_tag": "ALQ_296fbeca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.MethArray.Green.T C3L-01256 UCEC Methylation_Array tumor CPT0073450009 202184990013_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 798148fa-08e4-4a62-8dff-38d3fcc48b51 fd6d149430d5173c52efd46a65102d16 {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.MethArray.Red.T C3L-01256 UCEC Methylation_Array tumor CPT0073450009 202184990013_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 0ae65b57-e706-4671-8699-99e009975589 5112c0ad07a8de2e342ec67d0632b09b {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.miRNA-Seq.S35_L007_R1.T C3L-01256 UCEC miRNA-Seq tumor CPT0073450006 181012_UNC32-K00270_0124_AH223CBBXY_AGTTCC_S35_L007_R1_001.unaln.bam 252718413 BAM S35_L007_R1 submitted_unaligned CPTAC3 a060cd8c-a085-4f78-a248-18a246871bce cc09d4e29333e78868113fa688afd7fc {"aliquot_tag": "ALQ_99f8241a", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.miRNA-Seq.T.hg38 C3L-01256 UCEC miRNA-Seq tumor CPT0073450006 26fb9ce8-40d6-458a-9571-7c14764c6710_mirnaseq_gdc_realn.bam 284445834 BAM harmonized CPTAC3 c8d26989-1990-46b1-bfb0-e70a00622e0a 5a80dfeaf014d1b3d132dfc2bf98dcd9 {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.chimeric.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.chimeric.gdc_realn.bam 177920071 BAM chimeric harmonized CPTAC3 1dd2c3fb-15af-471d-8fc5-094e9ff42795 0f675952a207290c3e48fa8b4df74ee9 {"aliquot_tag": "ALQ_f21c1779", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.chimeric.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.chimeric.gdc_realn.bam 192235173 BAM chimeric harmonized CPTAC3 4d12ffd5-b78d-4c65-95bf-d3918e26b82f 0fcae649d067a6274874f0abaa711a2e {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.genomic.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.genomic.gdc_realn.bam 7428031802 BAM genomic harmonized CPTAC3 69eb43cc-231b-4cee-a5ae-a6d887940ea4 8faf2cccc8a49a2f237ce39ee252e6f5 {"aliquot_tag": "ALQ_f21c1779", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.genomic.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.genomic.gdc_realn.bam 7390728914 BAM genomic harmonized CPTAC3 648d8dc2-262f-4de9-ad8e-fc0e0fe8c28d 13a78fa40fb0f42e42c885df6a63de39 {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.S23_L007_R1.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R1_001.fastq.gz 3761318240 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 aafd76a4-f0d2-4e99-bc97-34a7f2c06846 b2195e17b5f26f35a28a0f9ed7bc62b5 {"aliquot_tag": "ALQ_99f8241a", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.S23_L007_R2.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R2_001.fastq.gz 4072906223 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 9c0ad385-aa72-4df1-a53b-57f77602a7d7 547473f5a415e5355a94075df9067340 {"aliquot_tag": "ALQ_99f8241a", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.S38_R1.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R1_001.fastq.gz 4634004887 FASTQ S38_R1 submitted_unaligned CPTAC3 a2286070-1ca0-4220-995d-4b52f21b7ac1 f07d157075a49ea9ffc6aa4ba68e01fb {"aliquot_tag": "ALQ_f21c1779", "sample": "S38", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.S38_R2.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R2_001.fastq.gz 4805766274 FASTQ S38_R2 submitted_unaligned CPTAC3 23da0ca3-9d18-4cef-b71a-1bb7fcc09d40 f84d1f6edbf02c8f19e161fba380d0f5 {"aliquot_tag": "ALQ_f21c1779", "sample": "S38", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.transcriptome.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.transcriptome.gdc_realn.bam 3641956382 BAM transcriptome harmonized CPTAC3 e2c24711-513e-48fc-947a-4003a0c44409 331dee5df5599c00f349c35539a428aa {"aliquot_tag": "ALQ_f21c1779", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.RNA-Seq.transcriptome.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.transcriptome.gdc_realn.bam 9325669305 BAM transcriptome harmonized CPTAC3 f15ac041-7682-4434-9920-1247535ee939 f030c2ab9c1d2d8ef1477e3f10f569fe {"aliquot_tag": "ALQ_99f8241a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.WGS.N C3L-01256 UCEC WGS blood_normal CPT0073470002 CPT0073470002.WholeGenome.RP-1303.bam 84063332371 BAM submitted_aligned CPTAC3 710decdb-c33e-481e-845c-951c5833bcc7 514cd022db160a9b9599afc777672c1f {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01256.WGS.N.hg38 C3L-01256 UCEC WGS blood_normal CPT0073470002 2df1178d-478f-43e4-9bb3-69c9cb9bc38e_gdc_realn.bam 126776835461 BAM harmonized CPTAC3 01b7fb65-f024-4aaa-8f7c-ae8d5457633a ab00e86b8ac40e67c8503f749d6fb2b7 {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01256.WGS.T C3L-01256 UCEC WGS tumor CPT0073450009 CPT0073450009.WholeGenome.RP-1303.bam 67582100912 BAM submitted_aligned CPTAC3 2b69b85e-dd11-41d1-9f4f-785b6d853589 5e1aec39556a4283aeba4a6df2ec3491 {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.WGS.T.hg38 C3L-01256 UCEC WGS tumor CPT0073450009 cb2e92de-4d9e-4273-bb97-d5310fd76b5b_gdc_realn.bam 101615829449 BAM harmonized CPTAC3 dfc183e0-7cd4-4b7d-b213-902bb7a9daee d8216950762f5f3fa0856a42ec70a1bc {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.WXS.N C3L-01256 UCEC WXS blood_normal CPT0073470002 CPT0073470002.WholeExome.RP-1303.bam 25711309740 BAM submitted_aligned CPTAC3 1044b951-8e3a-4772-a4ed-a38c6715f4df bcf9cb644f5ce3ef88c5c6787a178e64 {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01256.WXS.N.hg38 C3L-01256 UCEC WXS blood_normal CPT0073470002 2df1178d-478f-43e4-9bb3-69c9cb9bc38e_gdc_realn.bam 34596967278 BAM harmonized CPTAC3 709a7bc9-9f91-46a9-99e0-0f1f5c8879a1 d8e432cf5997c53dab0c3e6895a5e483 {"aliquot_tag": "ALQ_e455b363", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01256.WXS.T C3L-01256 UCEC WXS tumor CPT0073450009 CPT0073450009.WholeExome.RP-1303.bam 26404562688 BAM submitted_aligned CPTAC3 2dd3138f-f66e-431c-8401-bbc8ced59226 b01b3ae805eeadff17a0491c00ab789e {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01256.WXS.T.hg38 C3L-01256 UCEC WXS tumor CPT0073450009 cb2e92de-4d9e-4273-bb97-d5310fd76b5b_gdc_realn.bam 36406792655 BAM harmonized CPTAC3 e3ac065a-67d7-4f3d-a9ad-ea2a35806d87 7c22d7caa58b841f94174f5c8d05bd06 {"aliquot_tag": "ALQ_947398b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.MethArray.Green.T C3L-01257 UCEC Methylation_Array tumor CPT0073520009 202184990052_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dc9e3e10-bf6d-4518-8de0-1adb9cdef92d cf0bc4be9a5ddd4bbfc29af227b946a6 {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.MethArray.Red.T C3L-01257 UCEC Methylation_Array tumor CPT0073520009 202184990052_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 9c45a574-5d54-496a-ac41-6a1bd87498b9 b6dde5b64889098624f51d99f85ba4f4 {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.miRNA-Seq.S16_L005_R1.T C3L-01257 UCEC miRNA-Seq tumor CPT0073520013 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L005_R1_001.unaln.bam 215713343 BAM S16_L005_R1 submitted_unaligned CPTAC3 b5d0b452-b17f-4b87-9dee-273f2fcb876b 1f82938289c696a780bdccec9cba7a3c {"aliquot_tag": "ALQ_89f5ee61", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.miRNA-Seq.T.hg38 C3L-01257 UCEC miRNA-Seq tumor CPT0073520013 d72e1f5e-5cf3-4cee-8054-0599526852df_mirnaseq_gdc_realn.bam 231985536 BAM harmonized CPTAC3 ed635a3f-a4f4-42b8-acba-cca5db91866d 2cb1d52c9ee369c3d3a87b8d37fc2647 {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.chimeric.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.chimeric.gdc_realn.bam 44719522 BAM chimeric harmonized CPTAC3 0f2933f0-b3d1-4096-a356-fe6d17896036 8891bce0c06eb26ce2b1deaba53066be {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.chimeric.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.chimeric.gdc_realn.bam 196067454 BAM chimeric harmonized CPTAC3 ebfe9851-1962-4704-8441-5a57bc1f1de8 df7348da07a8e7d7a7dde96fa02a564a {"aliquot_tag": "ALQ_f1a04bac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.genomic.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.genomic.gdc_realn.bam 8823544951 BAM genomic harmonized CPTAC3 76d94c5d-68d6-4627-a33c-f218eb5b1f68 a5b5791b5335353c0f4b4b56a6c064b9 {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.genomic.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.genomic.gdc_realn.bam 8826823183 BAM genomic harmonized CPTAC3 95da19fb-a5e1-4f8b-8b44-9b33f98a05c3 ab0a97cd868cca5fe0af7ac1dc6ba615 {"aliquot_tag": "ALQ_f1a04bac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.S14_L004_R1.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4063064419 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 7c9d4661-f204-4d60-b0da-9de70a2d29b7 4552109fe2428b3fc155d6a57682aaaf {"aliquot_tag": "ALQ_89f5ee61", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.S14_L004_R2.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4399535512 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 b802ec84-9a75-4c16-bf86-e3b4e2e29561 22e55e021e0dbae07b4935faf9bcf661 {"aliquot_tag": "ALQ_89f5ee61", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.S83_R1.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R1_001.fastq.gz 5281490822 FASTQ S83_R1 submitted_unaligned CPTAC3 785c0243-009c-49d7-b4c0-be4734323d54 c212748c4bd31b344f26ee789ad8241a {"aliquot_tag": "ALQ_f1a04bac", "sample": "S83", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.S83_R2.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R2_001.fastq.gz 5478369987 FASTQ S83_R2 submitted_unaligned CPTAC3 22101653-18f1-4704-a537-6963329ab127 0b2957b1de3a8cac70a7d71aab820a33 {"aliquot_tag": "ALQ_f1a04bac", "sample": "S83", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.transcriptome.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.transcriptome.gdc_realn.bam 10054871273 BAM transcriptome harmonized CPTAC3 098eba98-9539-4c22-af7e-e224fb708750 d6b24f9e4799070a131bdf0ce95e8c53 {"aliquot_tag": "ALQ_89f5ee61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.RNA-Seq.transcriptome.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.transcriptome.gdc_realn.bam 4916961531 BAM transcriptome harmonized CPTAC3 d2779095-87a6-445a-a390-6fa7fa0820c2 024812a6324854f7224962c00cdaed42 {"aliquot_tag": "ALQ_f1a04bac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.WGS.N C3L-01257 UCEC WGS blood_normal CPT0073580002 CPT0073580002.WholeGenome.RP-1303.bam 65827543164 BAM submitted_aligned CPTAC3 3214d542-a601-4cb3-a721-456702e26547 e1944eba1e5d38f667e840796a43ac8f {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01257.WGS.N.hg38 C3L-01257 UCEC WGS blood_normal CPT0073580002 3db8446e-2099-484b-8423-a49189910b49_gdc_realn.bam 98058524518 BAM harmonized CPTAC3 54d040a9-00d4-4a18-bad6-bdeaa1a758ba 40d4d3ca0557435218d6fb40cd8ceac9 {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01257.WGS.T C3L-01257 UCEC WGS tumor CPT0073520009 CPT0073520009.WholeGenome.RP-1303.bam 70868851460 BAM submitted_aligned CPTAC3 c2dcc5f6-cf1b-4412-ace3-32e83634dbae 19bc11859a6429cabbfa2c8645d982bc {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.WGS.T.hg38 C3L-01257 UCEC WGS tumor CPT0073520009 e2d35a3b-cb54-4f5f-a99f-5453033ff93f_gdc_realn.bam 105829904013 BAM harmonized CPTAC3 6caaa45a-4ac6-479c-adb2-e947066663f7 50634d804971801003225a3d5de24fd7 {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.WXS.N C3L-01257 UCEC WXS blood_normal CPT0073580002 CPT0073580002.WholeExome.RP-1303.bam 33213302421 BAM submitted_aligned CPTAC3 a034b8b1-e2f4-40c3-b003-b6cde631088e bbe354bc8d007ca2628365d5aacac836 {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01257.WXS.N.hg38 C3L-01257 UCEC WXS blood_normal CPT0073580002 3db8446e-2099-484b-8423-a49189910b49_gdc_realn.bam 44941828927 BAM harmonized CPTAC3 fd6b0c0e-dba4-47e8-aa1a-24b2a702de0e 08e4a8b5cc088d663a15220f2a5f8301 {"aliquot_tag": "ALQ_ad59f717", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01257.WXS.T C3L-01257 UCEC WXS tumor CPT0073520009 CPT0073520009.WholeExome.RP-1303.bam 27603797956 BAM submitted_aligned CPTAC3 ef0001d3-0686-4ba7-9c1d-fbeac4338b84 b62de8380db3949ff2d3be871a9753aa {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01257.WXS.T.hg38 C3L-01257 UCEC WXS tumor CPT0073520009 e2d35a3b-cb54-4f5f-a99f-5453033ff93f_gdc_realn.bam 37863459985 BAM harmonized CPTAC3 bba2fa86-ecf4-484d-b7f8-d59cf9dd055c 2b0d72b303503bd4adee48b711caaa2f {"aliquot_tag": "ALQ_703b363e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01274.MethArray.Green.T C3L-01274 UCEC Methylation_Array tumor CPT0073630009 202176290047_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79ff47c2-6f1f-4e12-b1e1-aa3a5afb1950 7637021fefa24a0bc11c537d3d53abee {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.MethArray.Red.T C3L-01274 UCEC Methylation_Array tumor CPT0073630009 202176290047_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 5578bb07-2dfc-480c-97c4-eae213ec9da2 13632deb3184892a7239c5f798e70c54 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.miRNA-Seq.S33_L005_R1.T C3L-01274 UCEC miRNA-Seq tumor CPT0073630006 181119_UNC31-K00269_0165_AH27WCBBXY_GATCAG_S33_L005_R1_001.unaln.bam 173198260 BAM S33_L005_R1 submitted_unaligned CPTAC3 9e983688-405e-4887-bf2d-527ebeb08657 cc62011da1687f1f6b7a10bcbc7d5708 {"aliquot_tag": "ALQ_5b7070b1", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.miRNA-Seq.T.hg38 C3L-01274 UCEC miRNA-Seq tumor CPT0073630006 6649e770-5ea3-4a10-85ea-c3e169a97213_mirnaseq_gdc_realn.bam 193417284 BAM harmonized CPTAC3 bb060084-7061-40ee-9995-30354766cd92 3a8aa87addbdabeb17407f8ce45e0f83 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.chimeric.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.chimeric.gdc_realn.bam 167678268 BAM chimeric harmonized CPTAC3 a8487de5-e6bf-464a-9b04-713d42eb795d 2adaede6e6928bf3460ce4316506b557 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.chimeric.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.chimeric.gdc_realn.bam 76168275 BAM chimeric harmonized CPTAC3 e6659dd0-abee-4103-876f-102f24927342 cd8f15b1107b7dbee5c33b79095ccde2 {"aliquot_tag": "ALQ_77343902", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.genomic.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.genomic.gdc_realn.bam 8721980831 BAM genomic harmonized CPTAC3 6e0bacc8-4b7e-4052-bd39-e92d5f142cf8 f0760f2604e9c12ce1652ef5a03b8422 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.genomic.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.genomic.gdc_realn.bam 7601166536 BAM genomic harmonized CPTAC3 2b76149b-7cab-4c01-a67a-dab19c3c8019 d7c734f60ab9239a4d820c5fbbb91898 {"aliquot_tag": "ALQ_77343902", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.S11_R1.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R1_001.fastq.gz 3944111426 FASTQ S11_R1 submitted_unaligned CPTAC3 5bf7b772-62ed-4b85-a451-550bf9543c19 39ec777b7d1f8072938ada17049cfc9f {"aliquot_tag": "ALQ_77343902", "sample": "S11", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.S11_R2.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R2_001.fastq.gz 4117441845 FASTQ S11_R2 submitted_unaligned CPTAC3 03b7e483-eb54-4ae5-8c12-affc5515cafd c4fb5dfdc66d1814020201becaad00ea {"aliquot_tag": "ALQ_77343902", "sample": "S11", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.S2_L006_R1.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4334850295 FASTQ S2_L006_R1 submitted_unaligned CPTAC3 adabf69c-bc64-42c6-84cc-40e6c940bfc4 7fe44679100399223ba35cb066eeab6d {"aliquot_tag": "ALQ_5b7070b1", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.S2_L006_R2.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4663453182 FASTQ S2_L006_R2 submitted_unaligned CPTAC3 ddfc032c-927c-4358-b288-650e4f767de7 df35bb904dc8b430e0c15680be9cf6a0 {"aliquot_tag": "ALQ_5b7070b1", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.transcriptome.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.transcriptome.gdc_realn.bam 12460186371 BAM transcriptome harmonized CPTAC3 37ecdcb4-60c8-4570-a92f-083c650f022c ed85e856d0ff3a1a336f9921235f0148 {"aliquot_tag": "ALQ_5b7070b1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.RNA-Seq.transcriptome.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.transcriptome.gdc_realn.bam 3970319237 BAM transcriptome harmonized CPTAC3 a2e89930-c87e-4a32-88fd-f2342efe6ac7 8f141ab25f2698ad6fcdb8c9584b0b2f {"aliquot_tag": "ALQ_77343902", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.WGS.N C3L-01274 UCEC WGS blood_normal CPT0073650002 CPT0073650002.WholeGenome.RP-1303.bam 60948052243 BAM submitted_aligned CPTAC3 b1c0693f-e5ba-4d07-9d6f-f0f2cea3e4ae 14ce0518b46dcd5b8595152e62727c75 {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01274.WGS.N.hg38 C3L-01274 UCEC WGS blood_normal CPT0073650002 a173b565-312c-4c20-bd59-afb066c1d7b3_gdc_realn.bam 90075253528 BAM harmonized CPTAC3 17108db7-3252-4f5f-a60a-79a9000ddb69 5aab335a7ee1357cf59ba1c86f843c77 {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01274.WGS.T C3L-01274 UCEC WGS tumor CPT0073630009 CPT0073630009.WholeGenome.RP-1303.bam 77523757306 BAM submitted_aligned CPTAC3 2c8e5a8f-d394-4c0b-83a5-d71515148bfe e2ef4248cfc7157947b7ee068e239676 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.WGS.T.hg38 C3L-01274 UCEC WGS tumor CPT0073630009 bf666116-f576-4e26-a536-c70e0cbeaef4_gdc_realn.bam 117764818112 BAM harmonized CPTAC3 7a4f3b93-3970-42cb-9bd5-3baf02a98b8f 26f6ecb82c39a2ff15c0d4972e8e0344 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.WXS.N C3L-01274 UCEC WXS blood_normal CPT0073650002 CPT0073650002.WholeExome.RP-1303.bam 26348679933 BAM submitted_aligned CPTAC3 d28c4c08-12e7-4b5c-bb81-9ac9eaa5c198 ef9bd41709a4c010d11a642eb40a1831 {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01274.WXS.N.hg38 C3L-01274 UCEC WXS blood_normal CPT0073650002 a173b565-312c-4c20-bd59-afb066c1d7b3_gdc_realn.bam 35494592471 BAM harmonized CPTAC3 2b16a412-31aa-48a0-a720-3406d1bc0767 2077e36ce977af34ed2c79ab08d55e1b {"aliquot_tag": "ALQ_d35d4108", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01274.WXS.T C3L-01274 UCEC WXS tumor CPT0073630009 CPT0073630009.WholeExome.RP-1303.bam 27953926575 BAM submitted_aligned CPTAC3 8115a41a-3255-430b-bb65-bd78329f5564 8b6fe34ccc6e66c7eeaf15ea93fa296b {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01274.WXS.T.hg38 C3L-01274 UCEC WXS tumor CPT0073630009 bf666116-f576-4e26-a536-c70e0cbeaef4_gdc_realn.bam 38436779438 BAM harmonized CPTAC3 e928f628-a038-4f35-90f2-32109731213c ac2b07b68e677df24c49afc251c953a9 {"aliquot_tag": "ALQ_cbcf6d20", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01275.MethArray.Green.T C3L-01275 UCEC Methylation_Array tumor CPT0073730009 202178770006_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 dc19257a-e92d-484d-8706-13dfd7e81c0b 9c59ae687ddd40287147efe5ac496d91 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.MethArray.Red.T C3L-01275 UCEC Methylation_Array tumor CPT0073730009 202178770006_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 b8ba33c7-9157-43cc-a81b-56c96fdc8dbe a38ca5dbf73585e34b3ddd5b4a0b457a {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.miRNA-Seq.S31_L007_R1.T C3L-01275 UCEC miRNA-Seq tumor CPT0073730006 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L007_R1_001.unaln.bam 252093420 BAM S31_L007_R1 submitted_unaligned CPTAC3 7cd73eb0-8381-4c03-9354-953341045ba2 8694a7ae8b49f2a27f14d940238c67f1 {"aliquot_tag": "ALQ_902ca314", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.miRNA-Seq.T.hg38 C3L-01275 UCEC miRNA-Seq tumor CPT0073730006 fc67a81a-e459-4391-b965-b3734bc593a3_mirnaseq_gdc_realn.bam 278918188 BAM harmonized CPTAC3 5f4112c3-dd69-4d1a-ad02-1d0a3a4faced 2da98d84f762ee363e86f5be006cd86d {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.chimeric.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.chimeric.gdc_realn.bam 166745410 BAM chimeric harmonized CPTAC3 10915be1-d552-4c25-8f41-41c4765a6358 832d405c5cfb8ef354d6769bccb88d58 {"aliquot_tag": "ALQ_8fa4fdb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.chimeric.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.chimeric.gdc_realn.bam 91827027 BAM chimeric harmonized CPTAC3 e2687044-cf34-4a95-9f5e-d08d8362b15b 36832a08ce0327390c5bdee5be72981c {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.genomic.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.genomic.gdc_realn.bam 8758709819 BAM genomic harmonized CPTAC3 1cd02c63-89ed-4ded-94b6-1245219f3112 f2da1b905033856ad34ef099ac6ea5b6 {"aliquot_tag": "ALQ_8fa4fdb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.genomic.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.genomic.gdc_realn.bam 8326569091 BAM genomic harmonized CPTAC3 994f4781-3aff-4fac-bcc9-bf03c5d59609 1470d85e8d2d9278e2d112e76320185f {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.S1_L006_R1.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R1_001.fastq.gz 3988434359 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 4b44bd70-9e38-452a-878f-4875577eaa2c 3f6c5593444f3ae3799f8456de20316d {"aliquot_tag": "ALQ_902ca314", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.S1_L006_R2.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R2_001.fastq.gz 4442041976 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 555f14f3-dae8-486d-8306-df6603731765 2562397a52a1f4ea004b767e8887713a {"aliquot_tag": "ALQ_902ca314", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.S40_R1.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R1_001.fastq.gz 5661768051 FASTQ S40_R1 submitted_unaligned CPTAC3 084e10ac-9706-41cc-961e-13473e82b21d 372ed36604bb3ae33e03e226cd6a863b {"aliquot_tag": "ALQ_8fa4fdb3", "sample": "S40", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.S40_R2.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R2_001.fastq.gz 5905290807 FASTQ S40_R2 submitted_unaligned CPTAC3 34921176-558d-46f8-9cf2-ed74cebffb7b b944db3781bb90a1ab66ae388e4f9e11 {"aliquot_tag": "ALQ_8fa4fdb3", "sample": "S40", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.transcriptome.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.transcriptome.gdc_realn.bam 4975839940 BAM transcriptome harmonized CPTAC3 169e8e1d-d016-49a9-9a8a-75200752f4bc ab0a78884707a3620496d2c06413655b {"aliquot_tag": "ALQ_8fa4fdb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.RNA-Seq.transcriptome.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.transcriptome.gdc_realn.bam 11206180008 BAM transcriptome harmonized CPTAC3 ab655e77-80b7-4fe5-8014-538f00f27fe0 4b25a9c7d2f4586457825e9c8f2f4ac4 {"aliquot_tag": "ALQ_902ca314", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.WGS.N C3L-01275 UCEC WGS blood_normal CPT0073760002 CPT0073760002.WholeGenome.RP-1303.bam 71113217665 BAM submitted_aligned CPTAC3 f76c6579-cf1d-4c7f-b9da-4f1c6b66c6df dba684d8f37b16c150b837d1edcd7fbb {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01275.WGS.N.hg38 C3L-01275 UCEC WGS blood_normal CPT0073760002 069a9d12-aaae-41f8-bcb3-4b2de10d0aec_gdc_realn.bam 105241008960 BAM harmonized CPTAC3 269d555e-a19b-42bf-81bf-4e0c26c978a4 4ef6c5da9891e5c0362335a7b2ef973d {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01275.WGS.T C3L-01275 UCEC WGS tumor CPT0073730009 CPT0073730009.WholeGenome.RP-1303.bam 81276089887 BAM submitted_aligned CPTAC3 661241c8-d0d5-4ed5-964c-d6999bdf98fa 4bafbcf6c806ab8b962bb2260a7a3040 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.WGS.T.hg38 C3L-01275 UCEC WGS tumor CPT0073730009 a9da5378-f198-4cde-a619-1b7834af72a6_gdc_realn.bam 119824973740 BAM harmonized CPTAC3 d3bcdff3-cc7d-4d33-8256-862a2135fca6 9350c0e9de8958a895133103a481a6f0 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.WXS.N C3L-01275 UCEC WXS blood_normal CPT0073760002 CPT0073760002.WholeExome.RP-1303.bam 25717296407 BAM submitted_aligned CPTAC3 ab514c97-e709-4ebc-8e68-728782297243 f73984228aca74fed0e99ad953082d0d {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01275.WXS.N.hg38 C3L-01275 UCEC WXS blood_normal CPT0073760002 069a9d12-aaae-41f8-bcb3-4b2de10d0aec_gdc_realn.bam 34487844815 BAM harmonized CPTAC3 8b94a041-a634-4162-8b99-11f5a880e871 be1f34effa2eca500e84aea2457e3509 {"aliquot_tag": "ALQ_5fa1e87d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01275.WXS.T C3L-01275 UCEC WXS tumor CPT0073730009 CPT0073730009.WholeExome.RP-1303.bam 28370087326 BAM submitted_aligned CPTAC3 1ebdcb02-870f-49bb-bf92-81e1c1d0099b 7fc65a78ecb31f88fd742d2cd303699e {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01275.WXS.T.hg38 C3L-01275 UCEC WXS tumor CPT0073730009 a9da5378-f198-4cde-a619-1b7834af72a6_gdc_realn.bam 39287303390 BAM harmonized CPTAC3 dfa0615b-3d51-4baa-9381-5d7bd4140b88 b124a14e9d6edabc2434854f1a3461b7 {"aliquot_tag": "ALQ_93be85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01277.MethArray.Green.T C3L-01277 UCEC Methylation_Array tumor CPT0093170009 202234380050_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b000bbfb-c49c-4eb9-ba19-1af8221f21f1 45928b813b8ee42d9e943165af710fdc {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.MethArray.Red.T C3L-01277 UCEC Methylation_Array tumor CPT0093170009 202234380050_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 92f2b402-3216-4279-8eb7-9a32e9d45fdd 9df3badcc34acb528128c9379214dba2 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.miRNA-Seq.A.hg38 C3L-01277 UCEC miRNA-Seq tissue_normal CPT0093180006 5af1a647-cc68-4174-b107-bbb8abbeb296_mirnaseq_gdc_realn.bam 333047883 BAM harmonized CPTAC3 0cdf7d00-7f77-4dfe-ba9f-0f6927394f21 e9cd00ea186f973c6bda77ae6a270701 {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01277.miRNA-Seq.S21_L007_R1.T C3L-01277 UCEC miRNA-Seq tumor CPT0093170006 180724_UNC32-K00270_0106_BHWK3MBBXX_TCCCGA_S21_L007_R1_001.unaln.bam 197025026 BAM S21_L007_R1 submitted_unaligned CPTAC3 99fcdb54-5c29-4a88-bee5-6e77f57e76f0 584a6bcc7449e0d9543a89b3fd561a18 {"aliquot_tag": "ALQ_a67ff4fb", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.miRNA-Seq.S46_L006_R1.A C3L-01277 UCEC miRNA-Seq tissue_normal CPT0093180006 181113_UNC31-K00269_0164_AH23NNBBXY_CGTACG_S46_L006_R1_001.unaln.bam 288696791 BAM S46_L006_R1 submitted_unaligned CPTAC3 c62302d2-4b7e-4fcd-9d55-d72efcc2c12e d064f907de0905a2f62c0002148c21c3 {"aliquot_tag": "ALQ_242f632a", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01277.miRNA-Seq.T.hg38 C3L-01277 UCEC miRNA-Seq tumor CPT0093170006 49236849-0f5c-4cbd-a4a6-80215dc69604_mirnaseq_gdc_realn.bam 207749386 BAM harmonized CPTAC3 450c193b-64d6-4465-afb4-7973f0bb8238 daff1337250a85cd6b585335a2e09b86 {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.chimeric.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.chimeric.gdc_realn.bam 45253936 BAM chimeric harmonized CPTAC3 f912b67c-d2c7-425f-8985-cd13419859ad 61654022ef03ade4fce287ec0b5d96f6 {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01277.RNA-Seq.chimeric.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.chimeric.gdc_realn.bam 220263486 BAM chimeric harmonized CPTAC3 2fd1d141-4747-4143-bd80-7a4d323f51e8 7d2593e57b95dc7bccce8884effb2410 {"aliquot_tag": "ALQ_42db3238", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.chimeric.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.chimeric.gdc_realn.bam 71902090 BAM chimeric harmonized CPTAC3 63d25305-dd52-4c32-b28b-840244a26b6e a39c4834ba1ca7bc7f3ffc23ad52a5dd {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.genomic.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.genomic.gdc_realn.bam 8814124542 BAM genomic harmonized CPTAC3 18911020-a935-49cf-ad84-ccbe534b572b 2dfc23b8aa544193566b9e64cc20731a {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01277.RNA-Seq.genomic.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.genomic.gdc_realn.bam 10646099031 BAM genomic harmonized CPTAC3 d880a5d3-9b55-4e5a-ac52-7ee767cfc3f3 88cdee32b09c5573670bff234ab86f34 {"aliquot_tag": "ALQ_42db3238", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.genomic.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.genomic.gdc_realn.bam 11023109274 BAM genomic harmonized CPTAC3 bec4273a-cba7-4f84-ba67-7036f06841af ac48e5d37618b1786b3a8b1600b79c1d {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.S17_R1.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R1_001.fastq.gz 6550911602 FASTQ S17_R1 submitted_unaligned CPTAC3 22f78b1b-1060-4f26-9f8a-05805179ede5 c7abaef3612ab638d26436cbfb291d74 {"aliquot_tag": "ALQ_42db3238", "sample": "S17", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.S17_R2.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R2_001.fastq.gz 6658284782 FASTQ S17_R2 submitted_unaligned CPTAC3 e4971913-2357-4935-925d-992233dc2d90 bafbb7de3dbd33d0123489c52bb399cd {"aliquot_tag": "ALQ_42db3238", "sample": "S17", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.S21_L006_R1.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 5322892009 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 63924d9c-a45f-4223-9e38-6970fea9b0d7 30f50f35f2e1590425d71e5ce8ff74d7 {"aliquot_tag": "ALQ_a67ff4fb", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.S21_L006_R2.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 5627790362 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 48205079-1e88-4dba-a40b-04f5a828438b 3c282e6cb12748c6a9412001cee04238 {"aliquot_tag": "ALQ_a67ff4fb", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.S6_L002_R1.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4011758070 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 17b6bccb-914a-478f-90f9-4058651af31f 4e55fd03effbd2517d6418ff0a76484e {"aliquot_tag": "ALQ_242f632a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01277.RNA-Seq.S6_L002_R2.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4417437742 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 e84ff705-b0c1-4d60-80c5-2c343ff44b85 a650e62dc665e325a620c365120cc6af {"aliquot_tag": "ALQ_242f632a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01277.RNA-Seq.transcriptome.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.transcriptome.gdc_realn.bam 10530454755 BAM transcriptome harmonized CPTAC3 12f28388-aa08-4eaf-b273-01e85a939ea4 1b8990983173549bcc6d112881be80ec {"aliquot_tag": "ALQ_242f632a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01277.RNA-Seq.transcriptome.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.transcriptome.gdc_realn.bam 5162538711 BAM transcriptome harmonized CPTAC3 8fcbd240-efee-4550-8232-9da147340319 527eb346842dff88c2d1e159faeb5069 {"aliquot_tag": "ALQ_42db3238", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.RNA-Seq.transcriptome.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.transcriptome.gdc_realn.bam 12386909355 BAM transcriptome harmonized CPTAC3 0dceb543-1b4c-4091-a680-9bef508cb1a2 6b85539b48b296000eae70989f7e5480 {"aliquot_tag": "ALQ_a67ff4fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.WGS.N C3L-01277 UCEC WGS blood_normal CPT0093220002 CPT0093220002.WholeGenome.RP-1303.bam 58733749970 BAM submitted_aligned CPTAC3 4889c188-fb41-42db-8018-99fe16ff5545 7f50e38fabdd8dd4f5a2716f4b19c87e {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01277.WGS.N.hg38 C3L-01277 UCEC WGS blood_normal CPT0093220002 3c638e9f-be3f-4094-81b6-f66e67e4ce03_wgs_gdc_realn.bam 84968599555 BAM harmonized CPTAC3 7aa49cd4-a2b8-4263-910d-bef68dade24d 9b2e49c2edbf90e008a88da24eb7d815 {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01277.WGS.T C3L-01277 UCEC WGS tumor CPT0093170009 CPT0093170009.WholeGenome.RP-1303.bam 76600796882 BAM submitted_aligned CPTAC3 2b16171b-081d-45e9-b06e-981f863c4a87 ae237973164a1a6e49869600931f02e3 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.WGS.T.hg38 C3L-01277 UCEC WGS tumor CPT0093170009 f5c81226-3d13-46c6-8324-68bb1aa89a20_wgs_gdc_realn.bam 112328648739 BAM harmonized CPTAC3 16230cf1-74be-49bd-a49e-7962f8d00ea3 b035b789611be48a460ceeccdf387774 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.WXS.N C3L-01277 UCEC WXS blood_normal CPT0093220002 CPT0093220002.WholeExome.RP-1303.bam 37175288490 BAM submitted_aligned CPTAC3 05b96701-139b-47b2-a975-9587bda92574 5dde9cac4d8b1daf062873224a3cd42b {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01277.WXS.N.hg38 C3L-01277 UCEC WXS blood_normal CPT0093220002 3c638e9f-be3f-4094-81b6-f66e67e4ce03_wxs_gdc_realn.bam 49567708392 BAM harmonized CPTAC3 29525b06-1f04-457c-b20d-b635ed2e5ad3 aa4d4ee3b4b2439ffe9923e717d60c32 {"aliquot_tag": "ALQ_ef66cd3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01277.WXS.T C3L-01277 UCEC WXS tumor CPT0093170009 CPT0093170009.WholeExome.RP-1303.bam 37763127712 BAM submitted_aligned CPTAC3 a13fd0b4-44d3-4d68-82ec-f734c0a1fec2 089ca4a3b578b80e261b9d7ba32907eb {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01277.WXS.T.hg38 C3L-01277 UCEC WXS tumor CPT0093170009 f5c81226-3d13-46c6-8324-68bb1aa89a20_wxs_gdc_realn.bam 52945949501 BAM harmonized CPTAC3 5918a3f7-4181-4570-99a1-512b072ca1e9 77e166ebb26ff4b9e116ff20c9f843a6 {"aliquot_tag": "ALQ_36c0e96a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.MethArray.Green.A C3L-01279 CCRCC Methylation_Array tissue_normal CPT0104170006 204373100108_R01C01_Grn.idat 13677950 IDAT Green NA CPTAC3 5edf682c-5474-4e08-a9a8-c5f2e8bd6ec1 27496d7b2860928ba401edb25d6e04c3 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.MethArray.Green.T C3L-01279 CCRCC Methylation_Array tumor CPT0104160009 202234380061_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2f165a98-c2d4-402e-a306-bbfd152e6c93 1b96bd4c27f4d0a7740dbac4dfd12da8 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.MethArray.Red.A C3L-01279 CCRCC Methylation_Array tissue_normal CPT0104170006 204373100108_R01C01_Red.idat 13677950 IDAT Red NA CPTAC3 fdb66106-7b62-43a0-9655-36de7d382f68 a73289185d87761fdad9bcf2d187b603 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.MethArray.Red.T C3L-01279 CCRCC Methylation_Array tumor CPT0104160009 202234380061_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 3515802d-69c2-48b2-8914-07d2f31ae5fc d150cb4aced99e7291ed4d2c5b6634b0 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.miRNA-Seq.A.hg38 C3L-01279 CCRCC miRNA-Seq tissue_normal CPT0104170009 3e319e8a-911b-4d22-a27b-e9889f3c8f8f_mirnaseq_gdc_realn.bam 308417943 BAM harmonized CPTAC3 dc42a43d-7456-43f0-b2e7-beebe76bfa14 0fc04401cb67559d0d0400eeb7aeaa9e {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.miRNA-Seq.S34_L007_R1.T C3L-01279 CCRCC miRNA-Seq tumor CPT0104160006 181108_UNC31-K00269_0163_BH23TVBBXY_CATGGC_S34_L007_R1_001.unaln.bam 165457148 BAM S34_L007_R1 submitted_unaligned CPTAC3 9067e0e8-fc5e-4f77-ba22-41d4f2a0d353 4e47ac0f1e1044996c2f79509d4e733b {"aliquot_tag": "ALQ_568cecad", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.miRNA-Seq.S36_L002_R1.A C3L-01279 CCRCC miRNA-Seq tissue_normal CPT0104170009 181119_UNC31-K00269_0165_AH27WCBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 275035347 BAM S36_L002_R1 submitted_unaligned CPTAC3 164a5a41-d359-4322-bc0c-4db78b1d6d4b c14974b2aa6c491b5ecffc1190803277 {"aliquot_tag": "ALQ_fb53d88c", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.miRNA-Seq.T.hg38 C3L-01279 CCRCC miRNA-Seq tumor CPT0104160006 4184687b-7cad-4881-a135-03bc99541f09_mirnaseq_gdc_realn.bam 178914838 BAM harmonized CPTAC3 10a85ba2-27d3-4c41-9b9e-42bc3cad5a40 4bca88e088464e077d3bae3aeb96e2ed {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.RNA-Seq.chimeric.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.chimeric.gdc_realn.bam 37390527 BAM chimeric harmonized CPTAC3 9451df8c-e07f-4330-b8dc-edf00f12d6f7 f1f28fec227d05d404c94f96f87f7fa4 {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.RNA-Seq.chimeric.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.chimeric.gdc_realn.bam 32234199 BAM chimeric harmonized CPTAC3 5db9a400-b665-4d9a-a451-3e2ef9317d16 617a517900e02428590948975cfc6e7c {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.RNA-Seq.genomic.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.genomic.gdc_realn.bam 7988193379 BAM genomic harmonized CPTAC3 8980f50b-d5f9-4428-bb66-ad4bdcd1ab8f fc992719e0f6d44c3c3c3afb8e462ea7 {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.RNA-Seq.genomic.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.genomic.gdc_realn.bam 8751377407 BAM genomic harmonized CPTAC3 61c93a62-8bae-4348-a552-6b4e7e68c4d3 1071f4f80c7cd7daf7e2c3fc3d3c4a35 {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.RNA-Seq.S4_L001_R1.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3400040430 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 870735e3-75f8-488e-af4e-7a82e32779b9 b130ebf753bfadbf68933f6473e44853 {"aliquot_tag": "ALQ_fb53d88c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.RNA-Seq.S4_L001_R2.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R2_001.fastq.gz 3828397539 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 202b2906-4d82-4826-9f5a-3c346d5c472d 050c0a68c2161b5f9c7f5a17f8190a55 {"aliquot_tag": "ALQ_fb53d88c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.RNA-Seq.S8_L008_R1.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4227581240 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 530e230a-03eb-4b12-9d82-26ddff07506f 82ea9c629def27c9075968c6262cb450 {"aliquot_tag": "ALQ_568cecad", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.RNA-Seq.S8_L008_R2.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4627360370 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 66952eeb-be7d-4534-bf10-ca74c617ff26 fb4866af1384780e7ad4d0680f61f75b {"aliquot_tag": "ALQ_568cecad", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.RNA-Seq.transcriptome.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.transcriptome.gdc_realn.bam 8631925290 BAM transcriptome harmonized CPTAC3 9b5ee0c6-1239-4a68-aa74-863eb49157c4 2a225a010f766e73913ff8920e6937a7 {"aliquot_tag": "ALQ_fb53d88c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.RNA-Seq.transcriptome.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.transcriptome.gdc_realn.bam 11538013499 BAM transcriptome harmonized CPTAC3 d9054789-6efe-4791-99c8-4c7f42e5bb34 5c812fa0d2ec183b4afbf3a591b103dc {"aliquot_tag": "ALQ_568cecad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.WGS.A C3L-01279 CCRCC WGS tissue_normal CPT0104170006 CPT0104170006.WholeGenome.RP-1303.bam 54572911192 BAM submitted_aligned CPTAC3 05c884d8-efe8-4fd9-baa1-09ae55d49619 3ec2e75ccd8ed3536235b0d0206c6539 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.WGS.A.hg38 C3L-01279 CCRCC WGS tissue_normal CPT0104170006 891b282e-7f35-4107-ab81-dd592aae747d_wgs_gdc_realn.bam 80028293427 BAM harmonized CPTAC3 87baf592-72d8-4c27-ae81-5c9a34b9df2d 41d352e3385f54c9ebc2a4d7c62a5c2f {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.WGS.N C3L-01279 CCRCC WGS blood_normal CPT0105080002 CPT0105080002.WholeGenome.RP-1303.bam 66683602118 BAM submitted_aligned CPTAC3 c8da66cb-698f-42c2-b656-2ddf0412c6e1 49d9cdaa466d90a7281d552814c98e53 {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01279.WGS.N.hg38 C3L-01279 CCRCC WGS blood_normal CPT0105080002 f98a44f1-f2f1-41a6-8824-d0695bf6038f_wgs_gdc_realn.bam 98555196739 BAM harmonized CPTAC3 a3ce5196-7dcf-4fd1-9293-1a08b5e56acc b79b9ee69be5f8d5e42c5822c6a2919b {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01279.WGS.T C3L-01279 CCRCC WGS tumor CPT0104160009 CPT0104160009.WholeGenome.RP-1303.bam 58391419913 BAM submitted_aligned CPTAC3 7000d4ab-c5cb-4f07-9aaf-c2ee683bd7a2 d148509a84fe559e0dee5046cc2b4bc3 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.WGS.T.hg38 C3L-01279 CCRCC WGS tumor CPT0104160009 cba61413-75c2-4ecd-9ff4-4197eb753a73_wgs_gdc_realn.bam 86792752160 BAM harmonized CPTAC3 7bbf3271-9c54-4db8-8283-5adec290de65 1b2ba19c2d33ab08773e00475e6d29ba {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.WXS.A C3L-01279 CCRCC WXS tissue_normal CPT0104170006 CPT0104170006.WholeExome.RP-1303.bam 21112542920 BAM submitted_aligned CPTAC3 c25771ca-26e4-422a-8a80-2996e65f334b 3ca6f5387b3dab2091c9eadca7bd2d7a {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.WXS.A.hg38 C3L-01279 CCRCC WXS tissue_normal CPT0104170006 891b282e-7f35-4107-ab81-dd592aae747d_wxs_gdc_realn.bam 28383396538 BAM harmonized CPTAC3 880eb33a-2e7d-4ee3-a968-854bfe281777 69513cb6969af0f988efe0693d672954 {"aliquot_tag": "ALQ_6becc51d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01279.WXS.N C3L-01279 CCRCC WXS blood_normal CPT0105080002 CPT0105080002.WholeExome.RP-1303.bam 25707909632 BAM submitted_aligned CPTAC3 e5f593e7-0503-478a-a6c7-88e85cc00a0e d0c31008eddbb6217bc5b1c2281985f6 {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01279.WXS.N.hg38 C3L-01279 CCRCC WXS blood_normal CPT0105080002 f98a44f1-f2f1-41a6-8824-d0695bf6038f_wxs_gdc_realn.bam 35199849533 BAM harmonized CPTAC3 4e26774d-5eed-477a-8aef-6d0b446d3286 90b632d9e1a2e9a626501ad0a8857bdc {"aliquot_tag": "ALQ_83fa4ec4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01279.WXS.T C3L-01279 CCRCC WXS tumor CPT0104160009 CPT0104160009.WholeExome.RP-1303.bam 35855707257 BAM submitted_aligned CPTAC3 ac5d0429-3c52-4711-822f-6cd99084bf1d 330a9700a9800c45c1424026e28b4392 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01279.WXS.T.hg38 C3L-01279 CCRCC WXS tumor CPT0104160009 cba61413-75c2-4ecd-9ff4-4197eb753a73_wxs_gdc_realn.bam 50315552628 BAM harmonized CPTAC3 7eea3e6d-95c4-4a7b-803a-6fd37db3c087 e98cb11cef00eeac72561786aaa2c346 {"aliquot_tag": "ALQ_c633f13c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01281.MethArray.Green.A C3L-01281 CCRCC Methylation_Array tissue_normal CPT0079510009 204930640041_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c4329e50-45af-4e10-8766-0a03f4578e13 0c90a9d55d9d6bafeeef3daca5f11078 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.MethArray.Green.T C3L-01281 CCRCC Methylation_Array tumor CPT0079480009 202184900149_R03C01_Grn.idat 13676256 IDAT Green NA CPTAC3 3cccb205-c27b-4880-9a81-dd3177f6b458 8d2b9ee6cecad55bb0f4ab7f080a36e4 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.MethArray.Red.A C3L-01281 CCRCC Methylation_Array tissue_normal CPT0079510009 204930640041_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 ee540abc-f386-40ff-8e86-46f33b73f942 cc1d0adfa4131b907103097b09db01e5 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.MethArray.Red.T C3L-01281 CCRCC Methylation_Array tumor CPT0079480009 202184900149_R03C01_Red.idat 13676256 IDAT Red NA CPTAC3 60a079ca-7b46-4840-9a95-94ca8310def6 39cab6810d07e895fbe3caeba794940e {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.miRNA-Seq.A.hg38 C3L-01281 CCRCC miRNA-Seq tissue_normal CPT0079510006 2bf7a146-8f6b-46a3-8191-1f4d4ab28ab1_mirnaseq_gdc_realn.bam 272646604 BAM harmonized CPTAC3 d92ce0bb-625b-4063-97ef-d0955beb0470 291edf4f414b6221b576c69f20644df5 {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.miRNA-Seq.S5_L001_R1.T C3L-01281 CCRCC miRNA-Seq tumor CPT0079480006 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L001_R1_001.unaln.bam 199167904 BAM S5_L001_R1 submitted_unaligned CPTAC3 1a4ace81-70a6-4c15-a49d-42f8e2129ca6 42b859374d5224e5114af9b79594425d {"aliquot_tag": "ALQ_c518bfe5", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.miRNA-Seq.S5_L003_R1.A C3L-01281 CCRCC miRNA-Seq tissue_normal CPT0079510006 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L003_R1_001.unaln.bam 243016468 BAM S5_L003_R1 submitted_unaligned CPTAC3 5a022b03-d04d-4c92-98ca-0113be3c4ed2 e2be600e56af375368734e816117c1a4 {"aliquot_tag": "ALQ_3540e31", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.miRNA-Seq.T.hg38 C3L-01281 CCRCC miRNA-Seq tumor CPT0079480006 ddea8669-9eb1-4bbc-a9e5-649178e0ecb7_mirnaseq_gdc_realn.bam 228024609 BAM harmonized CPTAC3 7713735b-7304-482d-8ba8-6487c0c1f3c0 5c43f4563c8c02d2d5cda6b0fb7501c2 {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.RNA-Seq.chimeric.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.chimeric.gdc_realn.bam 71283780 BAM chimeric harmonized CPTAC3 8d121a08-3e6e-4b95-90c6-25b22fa9cbdd 577ce2f4116322b6126929212e95d1ce {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.RNA-Seq.chimeric.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.chimeric.gdc_realn.bam 163461926 BAM chimeric harmonized CPTAC3 96e56b01-4c53-48de-95e6-bda491a1dbc9 2ab6c6493220c7b42f2e98a98e2c013d {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.RNA-Seq.genomic.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.genomic.gdc_realn.bam 8012830528 BAM genomic harmonized CPTAC3 9b05f2b1-b83b-4baf-8c93-b0cd4202a813 87d3cfd7d40b2ef947a7d7c7c5613fa5 {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.RNA-Seq.genomic.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.genomic.gdc_realn.bam 6898729666 BAM genomic harmonized CPTAC3 2086af95-28ee-420f-a171-1926ac1648b8 963338855e86f9cc0b2fad6730487d00 {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.RNA-Seq.S17_L006_R1.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R1_001.fastq.gz 4049717564 FASTQ S17_L006_R1 submitted_unaligned CPTAC3 87a20970-f166-43c5-9f58-37ab02eb9c3e 189459a22de3fc3bac09f59f550c33da {"aliquot_tag": "ALQ_3540e31", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.RNA-Seq.S17_L006_R2.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R2_001.fastq.gz 4494267024 FASTQ S17_L006_R2 submitted_unaligned CPTAC3 29346dc3-bac8-4a23-9e20-d435e4b8ba61 75bceeca2ec62c4aaab7e815f357ad2b {"aliquot_tag": "ALQ_3540e31", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.RNA-Seq.S19_L005_R1.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3586263589 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 bb1a5e66-0f58-405f-892f-6734850101b3 9170f2f88db5ebbcc42d352ccc68184a {"aliquot_tag": "ALQ_c518bfe5", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.RNA-Seq.S19_L005_R2.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3921737446 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 fff48a4b-fe3e-4a6b-aca4-1a6086a61d98 f8b7dbb40850bd5ea21faec09683d2a5 {"aliquot_tag": "ALQ_c518bfe5", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.RNA-Seq.transcriptome.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.transcriptome.gdc_realn.bam 10159928168 BAM transcriptome harmonized CPTAC3 044dce65-de28-4ff3-8e7e-a36524f9d839 e2d83b1358690b31138ed4a99062799b {"aliquot_tag": "ALQ_3540e31", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.RNA-Seq.transcriptome.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.transcriptome.gdc_realn.bam 9818117886 BAM transcriptome harmonized CPTAC3 5155350a-ec77-4133-83a8-bada87304689 a07b9f321a52f90c4b113754986dae0d {"aliquot_tag": "ALQ_c518bfe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.WGS.A C3L-01281 CCRCC WGS tissue_normal CPT0079510009 CPT0079510009.WholeGenome.RP-1303.bam 53481861821 BAM submitted_aligned CPTAC3 a34e7c15-55ce-4a4c-9117-1a1eb6492963 a6958c699d447cf71e5fef76471e8b21 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.WGS.A.hg38 C3L-01281 CCRCC WGS tissue_normal CPT0079510009 1e0ea22d-76f2-4782-812b-820d5cf5aeb0_wgs_gdc_realn.bam 78347934899 BAM harmonized CPTAC3 14935819-bbcc-4a45-83d1-96b70ef73e02 9b0b8df7acedf1f7b848aa4b8879803c {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.WGS.N C3L-01281 CCRCC WGS blood_normal CPT0080150002 CPT0080150002.WholeGenome.RP-1303.bam 78130486181 BAM submitted_aligned CPTAC3 e4cd6fa8-5083-47d0-b680-974edd1b35e0 41d77592cfb53def70bc25cdc01f6bc4 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01281.WGS.N.hg38 C3L-01281 CCRCC WGS blood_normal CPT0080150002 8b4cb88a-2ab8-4fe1-8d63-083b17a8c14c_gdc_realn.bam 115837193515 BAM harmonized CPTAC3 4581fd53-4084-4c65-b665-3bf6b29f4c4d 385e2250e278c6050a698db31ccdd828 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01281.WGS.T C3L-01281 CCRCC WGS tumor CPT0079480009 CPT0079480009.WholeGenome.RP-1303.bam 85021529181 BAM submitted_aligned CPTAC3 0bf76a55-1e51-498b-bb9e-39e3a28b362c b65e101d7cac36ea7abe65d31e9d31ff {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.WGS.T.hg38 C3L-01281 CCRCC WGS tumor CPT0079480009 2b0a1c97-c220-422d-9579-2721457ce7c2_gdc_realn.bam 126827513998 BAM harmonized CPTAC3 ceaa0651-71c6-4269-a06d-4d335b6eca43 f94a8293765a4f39a4697541e053ae61 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.WXS.A C3L-01281 CCRCC WXS tissue_normal CPT0079510009 CPT0079510009.WholeExome.RP-1303.bam 30784553922 BAM submitted_aligned CPTAC3 25b81c9c-88a6-403a-9b10-3b4840b9fe49 26031be2da65e0ec038d3de95f6bc844 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.WXS.A.hg38 C3L-01281 CCRCC WXS tissue_normal CPT0079510009 1e0ea22d-76f2-4782-812b-820d5cf5aeb0_wxs_gdc_realn.bam 41984371343 BAM harmonized CPTAC3 2eb52c8e-83cb-4af4-a249-10370b3dfa8e 0f8cc4757437bca5a18103f1b69db6a1 {"aliquot_tag": "ALQ_93eb13a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01281.WXS.N C3L-01281 CCRCC WXS blood_normal CPT0080150002 CPT0080150002.WholeExome.RP-1303.bam 20981415531 BAM submitted_aligned CPTAC3 cad76c53-f5d0-452e-b36b-914e84da6a88 548cac988bee0a6caf5806fc66ef4840 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01281.WXS.N.hg38 C3L-01281 CCRCC WXS blood_normal CPT0080150002 8b4cb88a-2ab8-4fe1-8d63-083b17a8c14c_gdc_realn.bam 28106214520 BAM harmonized CPTAC3 35e20688-de92-443f-812b-9fced7fffcaa e0a2ef73d8c979c8e7228e9bd37bb588 {"aliquot_tag": "ALQ_26907981", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01281.WXS.T C3L-01281 CCRCC WXS tumor CPT0079480009 CPT0079480009.WholeExome.RP-1303.bam 29764350523 BAM submitted_aligned CPTAC3 0933d598-56ef-46e5-a4a1-ccc0b14f6e58 f0c26ee45baca02432ebaf60d554f211 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01281.WXS.T.hg38 C3L-01281 CCRCC WXS tumor CPT0079480009 2b0a1c97-c220-422d-9579-2721457ce7c2_gdc_realn.bam 41110958463 BAM harmonized CPTAC3 2a742c4c-b8e5-4ca6-a1d3-3cba3b62f273 da61f0a98300e7574c1f8cc0068211c5 {"aliquot_tag": "ALQ_55a7a274", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.MethArray.Green.T C3L-01282 UCEC Methylation_Array tumor CPT0077650006 202184900127_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 407d1d96-b7a5-4511-873e-cf0a08add8bc f803b6f63704855c722e57796a51ed81 {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.MethArray.Red.T C3L-01282 UCEC Methylation_Array tumor CPT0077650006 202184900127_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 dbec14a7-1a8a-4103-a819-37700b4b41ac 9e6fc4a2393a88c055f69ce2f18caccb {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.miRNA-Seq.A.hg38 C3L-01282 UCEC miRNA-Seq tissue_normal CPT0077660006 b6c46c53-683d-4eb2-803d-61943a9bca66_mirnaseq_gdc_realn.bam 270375214 BAM harmonized CPTAC3 1f5c3152-3875-4821-8cef-69a0c43212a9 9b2794033479193b347a8521eb8255b7 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.miRNA-Seq.S2_L006_R1.A C3L-01282 UCEC miRNA-Seq tissue_normal CPT0077660006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L006_R1_001.unaln.bam 239196277 BAM S2_L006_R1 submitted_unaligned CPTAC3 e055929f-c7b3-46ab-b70e-64d759619101 6022870733cb7b13f9074396da99a862 {"aliquot_tag": "ALQ_67dfdbd2", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.miRNA-Seq.S9_L006_R1.T C3L-01282 UCEC miRNA-Seq tumor CPT0077650009 181012_UNC32-K00270_0124_AH223CBBXY_CCAACA_S9_L006_R1_001.unaln.bam 201715314 BAM S9_L006_R1 submitted_unaligned CPTAC3 f1cfc03c-fddf-4891-af91-15d508892fc9 04bfd923956a622dfa4fc23606e2cc5e {"aliquot_tag": "ALQ_b0c0bc93", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.miRNA-Seq.T.hg38 C3L-01282 UCEC miRNA-Seq tumor CPT0077650009 d0e7ff6f-5eeb-434d-b37f-1cc2b1974b7f_mirnaseq_gdc_realn.bam 222539338 BAM harmonized CPTAC3 30ef5cb4-256d-401c-a270-2ca009809f12 349118fe0d15cbe00c02958098a094fd {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.chimeric.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.chimeric.gdc_realn.bam 187886582 BAM chimeric harmonized CPTAC3 a48dac8c-8a3b-40f0-af46-31c715c645f5 7b081299555c4180c11958bdc9239be5 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.RNA-Seq.chimeric.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.chimeric.gdc_realn.bam 45155422 BAM chimeric harmonized CPTAC3 125c907f-6175-4772-b7f2-ad909f233b4b 72fe1ef384edf3749bc088f2618ecfe6 {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.chimeric.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.chimeric.gdc_realn.bam 235181996 BAM chimeric harmonized CPTAC3 fdf7a2a9-e7f8-4b56-847a-b0b42f967fd2 cce56632b1a15ec5d9f3b0350e98066e {"aliquot_tag": "ALQ_ec6ce00a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.genomic.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.genomic.gdc_realn.bam 9190073298 BAM genomic harmonized CPTAC3 9e179bc4-884b-4ae8-b7d3-2afa329f7895 38b864c4bc13c259310ac6d7c21105e5 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.RNA-Seq.genomic.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.genomic.gdc_realn.bam 8427907700 BAM genomic harmonized CPTAC3 25175c36-6361-4908-997a-838eacef7bf5 efa8360760378ae58c2c47739d132463 {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.genomic.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.genomic.gdc_realn.bam 11489593331 BAM genomic harmonized CPTAC3 e7b90a57-4b21-4cd9-8ba4-7fa8f8a4021a 69e57383c3a32beef6e714767ab893bc {"aliquot_tag": "ALQ_ec6ce00a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.S10_L003_R1.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R1_001.fastq.gz 4353349155 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 b75aa815-18fc-4f67-8bd8-e80d70bf58d7 94f2cc6fa1864f9fdc6ce48bf85a9a85 {"aliquot_tag": "ALQ_67dfdbd2", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.RNA-Seq.S10_L003_R2.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R2_001.fastq.gz 4791112274 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 6c986f25-4352-4b8d-9f37-2de28762849a 820d743011d3bedb801b2963f942c7d3 {"aliquot_tag": "ALQ_67dfdbd2", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.RNA-Seq.S23_L006_R1.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3941841299 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 1055a2ed-0ffd-4a47-b98d-31f79271fecc 98ad26388ca7d1c301c5c2cd64b3bc0c {"aliquot_tag": "ALQ_b0c0bc93", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.S23_L006_R2.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4245797200 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 0d5983fb-0657-4a02-8a14-3606ea81b0d8 a63cd802cfa3c3163d50caa400b91656 {"aliquot_tag": "ALQ_b0c0bc93", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.S3_R1.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R1_001.fastq.gz 7280251156 FASTQ S3_R1 submitted_unaligned CPTAC3 363597da-f27e-4aca-86a4-13194b2e28c3 950005b7bba3d0d583dc5faf5a8b3f08 {"aliquot_tag": "ALQ_ec6ce00a", "sample": "S3", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.S3_R2.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R2_001.fastq.gz 7567392704 FASTQ S3_R2 submitted_unaligned CPTAC3 7d678625-0da7-4b47-9c0e-bbd21840b73d cfa90c94e61605bfed7e153d6e50172d {"aliquot_tag": "ALQ_ec6ce00a", "sample": "S3", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.transcriptome.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.transcriptome.gdc_realn.bam 11138518448 BAM transcriptome harmonized CPTAC3 9b173ff0-3d39-49b3-a29e-2ba275bb95e6 7bf3826eee47b1ae6a9bc1c0cbbcbaf6 {"aliquot_tag": "ALQ_67dfdbd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.RNA-Seq.transcriptome.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.transcriptome.gdc_realn.bam 8911439619 BAM transcriptome harmonized CPTAC3 8511d705-71c0-4633-bce6-feeb6414bde9 8d5c0639f8d7d25e0c65374c5ad1ca30 {"aliquot_tag": "ALQ_b0c0bc93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.RNA-Seq.transcriptome.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.transcriptome.gdc_realn.bam 6443706109 BAM transcriptome harmonized CPTAC3 ec9bc92d-e0ec-4b75-9d13-0699cfb26b53 733a829ea73281df5045115e908b50ec {"aliquot_tag": "ALQ_ec6ce00a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.WGS.A C3L-01282 UCEC WGS tissue_normal CPT0077660009 CPT0077660009.WholeGenome.RP-1303.bam 62732216484 BAM submitted_aligned CPTAC3 cbcb4407-f6ba-411a-aeac-9dce5be9de95 9cec5c4cef03838759f3393ccda2e0fb {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.WGS.A.hg38 C3L-01282 UCEC WGS tissue_normal CPT0077660009 ecb5ce69-21c6-425d-bdb6-11324b8875f9_wgs_gdc_realn.bam 92021527934 BAM harmonized CPTAC3 b9bf3672-ae78-450d-a3e9-76ce6611866c b8dc4a536cc0a6e887f257e7fce741e7 {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.WGS.N C3L-01282 UCEC WGS blood_normal CPT0080070001 CPT0080070001.WholeGenome.RP-1303.bam 71596914409 BAM submitted_aligned CPTAC3 7fc79f05-0d6b-4279-82d2-d9730cbffef7 213513cf3c1644afde1daac0350fa9df {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01282.WGS.N.hg38 C3L-01282 UCEC WGS blood_normal CPT0080070001 c7d1a1e3-525d-4ba3-85fe-f27b9c31a232_gdc_realn.bam 110743527474 BAM harmonized CPTAC3 2b3e454f-b10f-4fa3-be38-5be8b26150e4 a7e78ede3297a39be504c9ad021a804f {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01282.WGS.T C3L-01282 UCEC WGS tumor CPT0077650006 CPT0077650006.WholeGenome.RP-1303.bam 63409623659 BAM submitted_aligned CPTAC3 b60e793a-e912-4f99-af58-327b8a7059a3 41589cb809bad9e7491edc8371c415fa {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.WGS.T.hg38 C3L-01282 UCEC WGS tumor CPT0077650006 bdb69ab0-ab7e-42b7-a661-ddf5a6001729_gdc_realn.bam 94461339679 BAM harmonized CPTAC3 58cbc0e7-4448-4ecc-807e-f7386431c790 60559592806fd8a6c8d4ea45d43afc0d {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.WXS.A C3L-01282 UCEC WXS tissue_normal CPT0077660009 CPT0077660009.WholeExome.RP-1303.bam 35148629841 BAM submitted_aligned CPTAC3 b341a996-4fc3-4154-a6f7-0fb0025cc402 a121d3e79912eb66d86c2cb262e6bb23 {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.WXS.A.hg38 C3L-01282 UCEC WXS tissue_normal CPT0077660009 ecb5ce69-21c6-425d-bdb6-11324b8875f9_wxs_gdc_realn.bam 47546542875 BAM harmonized CPTAC3 8290011a-66a1-4eae-935b-28682276f577 1ce8a351520614a98b2aff6c29406a85 {"aliquot_tag": "ALQ_f760c643", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01282.WXS.N C3L-01282 UCEC WXS blood_normal CPT0080070001 CPT0080070001.WholeExome.RP-1303.bam 26655479726 BAM submitted_aligned CPTAC3 c9435953-c43f-4d11-9d66-af1c5b100aaf ffe340c876c2e5e81692edc9baf3380a {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01282.WXS.N.hg38 C3L-01282 UCEC WXS blood_normal CPT0080070001 c7d1a1e3-525d-4ba3-85fe-f27b9c31a232_gdc_realn.bam 35643618252 BAM harmonized CPTAC3 66b11653-2708-4457-a500-f5c599cdc2d0 36a0f297ffea6fdd9057d7d2e72208a6 {"aliquot_tag": "ALQ_e05a8fe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01282.WXS.T C3L-01282 UCEC WXS tumor CPT0077650006 CPT0077650006.WholeExome.RP-1303.bam 29311902267 BAM submitted_aligned CPTAC3 0deb5f00-8493-433d-a994-78fb8b5ad7b3 4a80e0cec4e867534d7d24bc64a39178 {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01282.WXS.T.hg38 C3L-01282 UCEC WXS tumor CPT0077650006 bdb69ab0-ab7e-42b7-a661-ddf5a6001729_gdc_realn.bam 40723764826 BAM harmonized CPTAC3 17017778-73ee-4163-8c32-767f45e148d9 be8cf8eb40fae9b700640c69e0436042 {"aliquot_tag": "ALQ_207fa102", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.MethArray.Green.T C3L-01283 CCRCC Methylation_Array tumor CPT0079380009 202178770079_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 dd2c0439-0851-48e4-b142-7f15a2cdb7e8 389925146065e0304a317d3edd184a18 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.MethArray.Red.T C3L-01283 CCRCC Methylation_Array tumor CPT0079380009 202178770079_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 415154e1-82c6-4df0-a1b0-d1c8eec90ed2 66501c78a41ed5c538e61cb17064d2a6 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.miRNA-Seq.S26_L007_R1.T C3L-01283 CCRCC miRNA-Seq tumor CPT0079380006 181012_UNC32-K00270_0124_AH223CBBXY_ACAGTG_S26_L007_R1_001.unaln.bam 228171810 BAM S26_L007_R1 submitted_unaligned CPTAC3 d08205ca-0db8-4769-af6e-48d5c7be7256 ab4e756e66f883cdaee1ffe3d12c9ccb {"aliquot_tag": "ALQ_d81d8f5d", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.miRNA-Seq.T.hg38 C3L-01283 CCRCC miRNA-Seq tumor CPT0079380006 f2f944fa-496c-4caa-a09f-b9f4f91a264e_mirnaseq_gdc_realn.bam 253663718 BAM harmonized CPTAC3 ca111531-0ab0-4185-8157-58bc231d7545 0e4707a32faa2194978f6a4dcb52c2cf {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.RNA-Seq.chimeric.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.chimeric.gdc_realn.bam 134928172 BAM chimeric harmonized CPTAC3 22cc5a7b-bb23-452b-bad9-90eb3557d522 e692fab237da8bd2231eaa794cf00545 {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.RNA-Seq.genomic.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.genomic.gdc_realn.bam 7242651177 BAM genomic harmonized CPTAC3 cdd2074f-1d25-494e-8b0a-7d7dd0c21ffd 4fbd8f8a020da978327fe555254501ca {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.RNA-Seq.S13_L004_R1.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3706511563 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 4cd023ec-9cf8-4808-a620-5ba0a21f54ae c8291f0af138ab346dbd453084d5cf4d {"aliquot_tag": "ALQ_d81d8f5d", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.RNA-Seq.S13_L004_R2.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3998841470 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 56176ec2-2e38-4022-b4aa-3bd26b8a9b89 5d15ad34118c975659b71dfcce824d32 {"aliquot_tag": "ALQ_d81d8f5d", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.RNA-Seq.transcriptome.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.transcriptome.gdc_realn.bam 9784353976 BAM transcriptome harmonized CPTAC3 ccd88077-b72e-479f-8a95-5dd43f85398d 15743111e10a56f61d9313ae524ca13d {"aliquot_tag": "ALQ_d81d8f5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.WGS.N C3L-01283 CCRCC WGS blood_normal CPT0080120001 CPT0080120001.WholeGenome.RP-1303.bam 76650176414 BAM submitted_aligned CPTAC3 56c3411f-c3e5-4c4f-8e1c-ec6937e6126f 94ea3254c7e686bc825415197e1ae523 {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01283.WGS.N.hg38 C3L-01283 CCRCC WGS blood_normal CPT0080120001 e8c358f4-8994-4b68-aa8a-521b69eee0f9_gdc_realn.bam 113942588506 BAM harmonized CPTAC3 897b6ee0-2fdb-4563-af8e-ff9ffed0170e 74ba4854ed4b884ed344b4ac2f07a9bc {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01283.WGS.T C3L-01283 CCRCC WGS tumor CPT0079380009 CPT0079380009.WholeGenome.RP-1303.bam 74320762577 BAM submitted_aligned CPTAC3 eb9dd8cf-fe3a-48b1-8090-cf0f584eec71 ea2340bb59bc131979926a7aac1538b1 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.WGS.T.hg38 C3L-01283 CCRCC WGS tumor CPT0079380009 378ea411-3d58-4f9a-803d-8b7b89c9a5b3_gdc_realn.bam 110635260938 BAM harmonized CPTAC3 26c17bc9-eea5-4ec9-80b1-6a9e04d5221e 1697253761ed17db477412ff7a51cdb9 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.WXS.N C3L-01283 CCRCC WXS blood_normal CPT0080120001 CPT0080120001.WholeExome.RP-1303.bam 32085522774 BAM submitted_aligned CPTAC3 708bc783-46c9-4bf8-aa04-6ebbbe5410d6 0ec33070d652319d635e1ddcf7584512 {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01283.WXS.N.hg38 C3L-01283 CCRCC WXS blood_normal CPT0080120001 e8c358f4-8994-4b68-aa8a-521b69eee0f9_gdc_realn.bam 43112561185 BAM harmonized CPTAC3 8d29cc75-bf30-4b44-a15e-5612ff9ca054 8558ef5ede01abfabb4088b776278fa8 {"aliquot_tag": "ALQ_db9f42b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01283.WXS.T C3L-01283 CCRCC WXS tumor CPT0079380009 CPT0079380009.WholeExome.RP-1303.bam 25497345225 BAM submitted_aligned CPTAC3 4c1d75f1-1fbb-4b4d-848d-7ebf03f36720 c071a89fb78060cd94d719bd41c3d532 {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01283.WXS.T.hg38 C3L-01283 CCRCC WXS tumor CPT0079380009 378ea411-3d58-4f9a-803d-8b7b89c9a5b3_gdc_realn.bam 34985381875 BAM harmonized CPTAC3 b2e8bff6-307d-4f95-902d-f89c6b0a2401 10f6bce2d07135a569a8013d3508b32f {"aliquot_tag": "ALQ_48a292cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.ADD_b1157386.MethArray.Green.T C3L-01285 LSCC Methylation_Array tumor CPT0087190009 203219720203_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 22ed4990-0f17-4b9b-85fe-1058026ad5c7 7658406412d9bf25d3fdb12d0ce8cd47 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.ADD_b1157386.MethArray.Red.T C3L-01285 LSCC Methylation_Array tumor CPT0087190009 203219720203_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 f3861979-fe9e-4ff2-892a-192fc5fdb2f9 21a8f7d1f8bb8311651d9b9a71657157 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.ADD_b1157386.WGS.T C3L-01285 LSCC WGS tumor CPT0087190009 CPT0087190009.WholeGenome.RP-1303.bam 56749005869 BAM submitted_aligned CPTAC3 e3ce3d5c-db6b-4b43-9de6-f5dd8f63b249 754a03006cecd35177cf7c2e35967cc2 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.ADD_b1157386.WGS.T.hg38 C3L-01285 LSCC WGS tumor CPT0087190009 09f170eb-d0fd-4f2c-818f-20bdfa042fb6_wgs_gdc_realn.bam 83723210431 BAM harmonized CPTAC3 86676d44-42fe-4224-b835-65d8597dd17f c6f05f99b444e512814ce0ffad402391 {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.ADD_b1157386.WXS.T C3L-01285 LSCC WXS tumor CPT0087190009 CPT0087190009.WholeExome.RP-1303.bam 31154542517 BAM submitted_aligned CPTAC3 9d8fdc95-e214-4ede-8da1-f4785ee6ec91 8ba4ff6a3c7e9b568ee41d000bd7310a {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.ADD_b1157386.WXS.T.hg38 C3L-01285 LSCC WXS tumor CPT0087190009 09f170eb-d0fd-4f2c-818f-20bdfa042fb6_wxs_gdc_realn.bam 42998316223 BAM harmonized CPTAC3 6d6e2b9d-4d1c-42b4-a6cb-756b8d0ca803 be5dc34c60fce9b5e95de68c3136e91f {"aliquot_tag": "ADD_b1157386", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.MethArray.Green.A C3L-01285 LSCC Methylation_Array tissue_normal CPT0087210006 203219670106_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 484d19ae-e7cf-4748-a344-c3fe37f5a647 9929bc792e4080d37c3fb66079cac973 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.MethArray.Red.A C3L-01285 LSCC Methylation_Array tissue_normal CPT0087210006 203219670106_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 ad8b17b9-ed6e-4faa-90de-499605c390ee 371a6f8c68d882e59c4e38b4a86ba493 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.miRNA-Seq.A.hg38 C3L-01285 LSCC miRNA-Seq tissue_normal CPT0087210009 ba7e3a8d-cdfe-4931-94bb-c511097ad500_mirnaseq_gdc_realn.bam 263692028 BAM harmonized CPTAC3 58f9f58d-8859-4ee0-9295-a2042a127f1c 1865177a46e1aaa2757d64d373062789 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.miRNA-Seq.S38_L008_R1.T C3L-01285 LSCC miRNA-Seq tumor CPT0087190006 180724_UNC32-K00270_0106_BHWK3MBBXX_CCGTCC_S38_L008_R1_001.unaln.bam 225495030 BAM S38_L008_R1 submitted_unaligned CPTAC3 2cd86fa8-c2ec-4f82-b51a-bf56525aaff9 4ef2d6f6589fdff19f8e29bab3780628 {"aliquot_tag": "ALQ_21aa6e17", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.miRNA-Seq.S44_L006_R1.A C3L-01285 LSCC miRNA-Seq tissue_normal CPT0087210009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGGCC_S44_L006_R1_001.unaln.bam 234051497 BAM S44_L006_R1 submitted_unaligned CPTAC3 c04dd017-f07b-4d8b-b0e9-bf4e614c7ed9 9d7a002f3164bcf65b9690818a647f6a {"aliquot_tag": "ALQ_7f14ae9", "sample": "S44", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.miRNA-Seq.T.hg38 C3L-01285 LSCC miRNA-Seq tumor CPT0087190006 7ee852f2-56c1-424a-9699-50528125019c_mirnaseq_gdc_realn.bam 242606284 BAM harmonized CPTAC3 31b811ec-b22e-41e1-8dec-8b518a373e0a a109a9a16eca8b60f8af92cbee457e99 {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.RNA-Seq.chimeric.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.chimeric.gdc_realn.bam 33247562 BAM chimeric harmonized CPTAC3 9bfb1269-2950-4f6b-8c51-04cac43d7ae1 aafb806e90a2a964cc0c6e9635bae515 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.RNA-Seq.chimeric.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.chimeric.gdc_realn.bam 43576811 BAM chimeric harmonized CPTAC3 fec913ce-39ee-4da5-aaef-0f9d499f5dfa 04361fec1e400b0558014187b6cfc476 {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.RNA-Seq.genomic.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.genomic.gdc_realn.bam 6565682993 BAM genomic harmonized CPTAC3 7b9c4a5c-337f-49dd-917c-d306bf11a7e9 a8ee808331beb93d15126f90769fc476 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.RNA-Seq.genomic.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.genomic.gdc_realn.bam 7522829351 BAM genomic harmonized CPTAC3 1fe1f83f-9784-4356-90b2-c795609b32f5 e02c6601d2460dee118a6ad0b35cf420 {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.RNA-Seq.S12_L003_R1.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3037892491 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 3580e292-7009-461f-87fe-52b973745274 39188ea5e46f2aaa9d93558ca5069897 {"aliquot_tag": "ALQ_7f14ae9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.RNA-Seq.S12_L003_R2.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3332813643 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 e3e636bb-f22b-4dca-8c05-1190386bd6d7 8b8db290f814c7e7c33961e9e14d8af9 {"aliquot_tag": "ALQ_7f14ae9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.RNA-Seq.S7_L002_R1.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3722565553 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 6d178311-7b59-4974-b5e1-96e7944378e3 3d72470d99eac46e53d57200c6818315 {"aliquot_tag": "ALQ_21aa6e17", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.RNA-Seq.S7_L002_R2.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3925972669 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 6b06b248-5a0e-4709-af77-0bfebc899a0a 7223fea0208e26b4f1e9b57215238f2b {"aliquot_tag": "ALQ_21aa6e17", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.RNA-Seq.transcriptome.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.transcriptome.gdc_realn.bam 8235406334 BAM transcriptome harmonized CPTAC3 ab21406d-2a66-42c2-9080-d7428e8bfdbd 04f4db55060e4c79f72cda6638e249e0 {"aliquot_tag": "ALQ_7f14ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.RNA-Seq.transcriptome.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.transcriptome.gdc_realn.bam 9630903231 BAM transcriptome harmonized CPTAC3 dc6debc2-7f99-4575-9836-99cf2dfb3b91 1272799b75cb2efb89437151b12f465f {"aliquot_tag": "ALQ_21aa6e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01285.WGS.A C3L-01285 LSCC WGS tissue_normal CPT0087210006 CPT0087210006.WholeGenome.RP-1303.bam 60404295878 BAM submitted_aligned CPTAC3 9975e347-f468-4c4f-918f-e9e573902eec 061dd03e80c738ebca9c689f3f158454 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.WGS.A.hg38 C3L-01285 LSCC WGS tissue_normal CPT0087210006 68478f98-036d-4812-9b6d-a8a850925cb3_wgs_gdc_realn.bam 87580693686 BAM harmonized CPTAC3 8cb38e1a-2a6d-43f1-92d4-0f101237408f 1c9aaad48bc05e706216bf202d4aadc2 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.WGS.N C3L-01285 LSCC WGS blood_normal CPT0087480002 CPT0087480002.WholeGenome.RP-1303.bam 68319294486 BAM submitted_aligned CPTAC3 05bc5d98-4031-43df-b125-c3d66da4c6de e172062cb9d41b3305212cad9af17ce1 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01285.WGS.N.hg38 C3L-01285 LSCC WGS blood_normal CPT0087480002 e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wgs_gdc_realn.bam 100210891212 BAM harmonized CPTAC3 f52e8430-6879-4a01-b417-9f9221970f98 05d2d3adb5691e5c9a6cd5bcfe486307 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01285.WXS.A C3L-01285 LSCC WXS tissue_normal CPT0087210006 CPT0087210006.WholeExome.RP-1303.bam 37894290150 BAM submitted_aligned CPTAC3 0963b06c-23c2-4249-9bdf-40d806fd19e9 d85c4ed1c1383785d516c4350b163045 {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.WXS.A.hg38 C3L-01285 LSCC WXS tissue_normal CPT0087210006 68478f98-036d-4812-9b6d-a8a850925cb3_wxs_gdc_realn.bam 49934861081 BAM harmonized CPTAC3 84c740d9-f1dc-4b7d-91a1-010e2aa16846 e40f3cdee528e612cc1cbaf8c6b29f0b {"aliquot_tag": "ALQ_974e5778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01285.WXS.N C3L-01285 LSCC WXS blood_normal CPT0087480002 CPT0087480002.WholeExome.RP-1303.bam 27836285935 BAM submitted_aligned CPTAC3 795cbd55-5fda-4e77-8702-d3920da20c1d b33bab09f4e0dc17390fa112eceb5f51 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01285.WXS.N.hg38 C3L-01285 LSCC WXS blood_normal CPT0087480002 e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wxs_gdc_realn.bam 38641817752 BAM harmonized CPTAC3 425b6b9a-af16-45d3-995d-790e291ca478 4a9d765443cf73073029e5f7d8a9d2a6 {"aliquot_tag": "ALQ_4b6a120d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01286.DUP_3a13eee.MethArray.Green.T C3L-01286 CCRCC Methylation_Array tumor CPT0086940009 204367470124_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 b44e188c-0878-400f-af62-52165e0b9fa8 da7b16ec5d5b96b8a95662838fee0ee4 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_3a13eee.MethArray.Red.T C3L-01286 CCRCC Methylation_Array tumor CPT0086940009 204367470124_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 9858e47c-fcd6-41fa-9d99-1e69bab6674d 65abd3e59355ca7c4ebb0f388f69bb6e {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_3a13eee.WGS.T C3L-01286 CCRCC WGS tumor CPT0086940009 CPT0086940009.WholeGenome.RP-2158.bam 24064476755 BAM submitted_aligned CPTAC3 1de59e38-405c-4bd1-8668-1ef5cc069e75 345ea743562c2c0ac5f6fd2d9c452898 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_3a13eee.WGS.T.hg38 C3L-01286 CCRCC WGS tumor CPT0086940009 3273386b-8642-4645-8d20-da00c02430dd_wgs_gdc_realn.bam 72262014428 BAM harmonized CPTAC3 b5c44ee3-a80a-4278-8fbf-8ccb26dc6907 8f72eb6f31502a47508eccb8e9f14fb1 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_3a13eee.WXS.T C3L-01286 CCRCC WXS tumor CPT0086940009 CPT0086940009.WholeExome.RP-1303.bam 20984438578 BAM submitted_aligned CPTAC3 87f6237d-f3fa-4114-a385-7c234844f66d 1db24985f0f3468195c2d1c14f0c87f3 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_3a13eee.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086940009 3273386b-8642-4645-8d20-da00c02430dd_wxs_gdc_realn.bam 28411448324 BAM harmonized CPTAC3 2bb02a3b-f6dc-43fb-ab33-d235bfdba3d5 40ce1318b6fd3f8806659af642168c07 {"aliquot_tag": "DUP_3a13eee", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_79616d8e.MethArray.Green.T C3L-01286 CCRCC Methylation_Array tumor CPT0086960009 204372030085_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 58be5587-c8b0-4d17-9b24-14151a8f1678 754c0ead494da4e11eec0e2a65c02e6a {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_79616d8e.MethArray.Red.T C3L-01286 CCRCC Methylation_Array tumor CPT0086960009 204372030085_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 34e3608c-0ec3-49da-b67b-a6debc61555d 03b71cebab52bbf4bd97405a75a80c83 {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_79616d8e.WGS.T C3L-01286 CCRCC WGS tumor CPT0086960009 CPT0086960009.WholeGenome.RP-2158.bam 28387083981 BAM submitted_aligned CPTAC3 897c4ce8-0551-4454-b473-624a1664080e 471c5f19483825d3bcec6b7d5cd5ff91 {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_79616d8e.WGS.T.hg38 C3L-01286 CCRCC WGS tumor CPT0086960009 020028de-c4ec-4699-a174-79639c6ee6bd_wgs_gdc_realn.bam 85450385411 BAM harmonized CPTAC3 601ed550-d4e7-41c9-9aac-91462165fac0 6b2e3bf208a66a1b44c85c1f085a0a50 {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_79616d8e.WXS.T C3L-01286 CCRCC WXS tumor CPT0086960009 CPT0086960009.WholeExome.RP-1303.bam 48709874164 BAM submitted_aligned CPTAC3 d4c353ab-065e-4b2e-a4d5-f245b69b437c 039df81f98053427f6d11b5c1a372cce {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_79616d8e.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086960009 020028de-c4ec-4699-a174-79639c6ee6bd_wxs_gdc_realn.bam 68537385151 BAM harmonized CPTAC3 d2badeed-7ed0-451b-bcd8-4f78fb2b265b b9595721352345ead8aeb8b49a33ef5d {"aliquot_tag": "DUP_79616d8e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_931e237f.miRNA-Seq.S12_L004_R1.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086940006 200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L004_R1_001.unaln.bam 183791928 BAM S12_L004_R1 submitted_unaligned CPTAC3 12897640-8046-49f3-97d3-2141b7a0fbd7 fd9f3e2bd13a2f8ac92d16063760276c {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_931e237f.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086940006 9e98a4b6-d3c1-4be6-abf7-8c3b23660024_mirnaseq_gdc_realn.bam 201336741 BAM harmonized CPTAC3 60675bcc-4a1f-491d-8d3c-f1d2255c5a7b 0957034e6a8916e3af766467e4576ab4 {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_931e237f.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.chimeric.gdc_realn.bam 208678659 BAM chimeric harmonized CPTAC3 ba6acc72-6c4b-4072-b477-e6bfe3618510 fdf5500d82a28f548b053e9c78f992dc {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_931e237f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.genomic.gdc_realn.bam 8016068559 BAM genomic harmonized CPTAC3 62455dc5-e7f4-47f9-a13d-be311c9ed9d2 a552d649a301be7545d74e85b34111df {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_931e237f.RNA-Seq.S22_L006_R1.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R1_001.fastq.gz 3975358314 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 8cde48de-4e58-439a-8be7-9df3c665e913 b95083e19f5390ae9fe0128b3e29c77f {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_931e237f.RNA-Seq.S22_L006_R2.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R2_001.fastq.gz 4553952342 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 05abf494-6e36-49bc-82b0-c00d8d43bba4 b3ba7a79233838cb1a0bf5fc1da64ac3 {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_931e237f.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.transcriptome.gdc_realn.bam 11555576846 BAM transcriptome harmonized CPTAC3 ea2f47a0-9eb0-4791-b3ee-a3ee6fc32348 6e1b1b97f8be4d4567db346f827dc200 {"aliquot_tag": "DUP_931e237f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_e9de701f.miRNA-Seq.S15_L004_R1.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086960006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAATCG_S15_L004_R1_001.unaln.bam 251964153 BAM S15_L004_R1 submitted_unaligned CPTAC3 9daa5cb1-886d-4531-9bf3-054ca6131646 3408905f3ec4a4de772b9b475f875255 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_e9de701f.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086960006 9cb77589-64a9-4033-93a3-d92790f43def_mirnaseq_gdc_realn.bam 274032277 BAM harmonized CPTAC3 5479f99a-a7d4-453b-8367-77eb676a68fc 92549aa7e606c4e4132baec8dd889923 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_e9de701f.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.chimeric.gdc_realn.bam 271581567 BAM chimeric harmonized CPTAC3 a9e60890-0667-4938-8ce2-dae95fc45b0d 95aa104702793b10519ba7957574634a {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_e9de701f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.genomic.gdc_realn.bam 7740888311 BAM genomic harmonized CPTAC3 962d235e-7805-4702-b4e2-f1da8cf96cee 609a78b1aff6e24a2f1e6a0aca71ada6 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_e9de701f.RNA-Seq.S23_L006_R1.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R1_001.fastq.gz 3713606868 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 13262c45-16ad-4c4d-8b2f-332613c9e5af bb7c9748587fc60489576a46895273a0 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_e9de701f.RNA-Seq.S23_L006_R2.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R2_001.fastq.gz 4364596156 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 d81807be-d2cb-4a97-83f0-6999d9282f5a 660cd4e0691f9d182fcac6a84897b527 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.DUP_e9de701f.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.transcriptome.gdc_realn.bam 10500467641 BAM transcriptome harmonized CPTAC3 80c1e594-f077-41bd-a787-bc96f4f453cf b8ab4166b7e918205ee5b5cce0239e71 {"aliquot_tag": "DUP_e9de701f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.MethArray.Green.A C3L-01286 CCRCC Methylation_Array tissue_normal CPT0086970009 203027390029_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 df2ff300-0973-4f0d-a656-9e7b855d5186 64f4d08a6330af43260e99f87aa4a2fc {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.MethArray.Green.T C3L-01286 CCRCC Methylation_Array tumor CPT0086950009 202176300001_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0a817c99-ca6f-4012-9afa-f115ff0859e4 71f5e7158c7d9c2d63769e54a60cba16 {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.MethArray.Red.A C3L-01286 CCRCC Methylation_Array tissue_normal CPT0086970009 203027390029_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 e02f45ab-52f2-4795-84e4-1fccdca7b231 5259347b0bcb0ac31de51746208567a0 {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.MethArray.Red.T C3L-01286 CCRCC Methylation_Array tumor CPT0086950009 202176300001_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 66262ed3-30d1-4cbc-bb0c-d4ba644df1ca 324972838adbf66dca108731e6eeb709 {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.miRNA-Seq.A.hg38 C3L-01286 CCRCC miRNA-Seq tissue_normal CPT0086970006 999675db-cee5-4c69-984a-3ceb6f854f7c_mirnaseq_gdc_realn.bam 175265370 BAM harmonized CPTAC3 338cd42a-1ab2-4891-b578-273d60bfcc21 258ba7ab946c26fc989c35ad23a51e64 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.miRNA-Seq.S16_L005_R1.A C3L-01286 CCRCC miRNA-Seq tissue_normal CPT0086970006 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L005_R1_001.unaln.bam 152344550 BAM S16_L005_R1 submitted_unaligned CPTAC3 eb0c04ae-dd29-4342-b668-3bfffabf2775 0154b3054edcf4386d5af2052bc34034 {"aliquot_tag": "ALQ_d4be59af", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.miRNA-Seq.S2_L001_R1.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086950006 181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 233567705 BAM S2_L001_R1 submitted_unaligned CPTAC3 e590a1e3-dd10-4e73-aa9a-c48bbaf21566 16ead761e1f969794fd18c334ffd59f1 {"aliquot_tag": "ALQ_ae7e0acf", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086950006 57a78a5e-e720-45b9-a768-56f624f814b8_mirnaseq_gdc_realn.bam 252515829 BAM harmonized CPTAC3 d605c5e3-1362-4a41-89f6-8a132fb81df0 872decc857fa8982a12307da225c3d01 {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.RNA-Seq.chimeric.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.chimeric.gdc_realn.bam 107978724 BAM chimeric harmonized CPTAC3 9a6d581b-4809-4a1a-aa47-0f265b8cce26 cdd6c0113dd21f51b298cef0fa531da3 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.chimeric.gdc_realn.bam 35282551 BAM chimeric harmonized CPTAC3 f64aef9a-e33f-4536-bae9-c5e164228100 3b30b81fb3059b15f4a3846ecc3eee64 {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.RNA-Seq.genomic.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.genomic.gdc_realn.bam 8751369807 BAM genomic harmonized CPTAC3 76b4a2ac-6047-4cb9-8ad5-11f99d50316e cdf74474a0ff1614dfe37ca82774f550 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.genomic.gdc_realn.bam 7522799887 BAM genomic harmonized CPTAC3 f5d18902-48ae-4f5e-9709-fc17291894ce 78738c022396f00717123c8218812fea {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.RNA-Seq.S6_L006_R1.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R1_001.fastq.gz 3814402880 FASTQ S6_L006_R1 submitted_unaligned CPTAC3 0d7011ca-0c48-43ef-8143-4c0b5e342cc8 c4459cd61fbc128c058245f75b23e434 {"aliquot_tag": "ALQ_ae7e0acf", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.RNA-Seq.S6_L006_R2.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R2_001.fastq.gz 4005785828 FASTQ S6_L006_R2 submitted_unaligned CPTAC3 c07931d4-4634-4705-8c0f-f7c78ce8b017 cc8008b6ab1670339bb95d90e6cec480 {"aliquot_tag": "ALQ_ae7e0acf", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.RNA-Seq.S8_L002_R1.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R1_001.fastq.gz 4256220377 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 7c03923c-a1f3-44cc-a70c-89a22a27f780 d29be8e3b9a01e412920400d1695d87b {"aliquot_tag": "ALQ_d4be59af", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.RNA-Seq.S8_L002_R2.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R2_001.fastq.gz 4199001179 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 387efbbe-ed80-4e0d-a72d-bc8dad68a2e5 7fb35cffe86c84e18681d75baa58122e {"aliquot_tag": "ALQ_d4be59af", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.RNA-Seq.transcriptome.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.transcriptome.gdc_realn.bam 10000734072 BAM transcriptome harmonized CPTAC3 a7bdd739-52bd-40ef-adf5-3b3f24672ab6 77db7c9866ab21e249191bc88f9cf5e1 {"aliquot_tag": "ALQ_d4be59af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.transcriptome.gdc_realn.bam 11504963563 BAM transcriptome harmonized CPTAC3 80db8ae3-6e95-49e2-8819-f399d9364b79 75692990618d49f62c3fbac21d8ddf06 {"aliquot_tag": "ALQ_ae7e0acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.WGS.A C3L-01286 CCRCC WGS tissue_normal CPT0086970009 CPT0086970009.WholeGenome.RP-1303.bam 53853615673 BAM submitted_aligned CPTAC3 7bfa8592-7045-45f3-8026-4fcb84a90abc 3a52d40c6e8f1cc59ff749087c207783 {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.WGS.A.hg38 C3L-01286 CCRCC WGS tissue_normal CPT0086970009 76a1e6c8-1257-40b0-b2e0-941a1a66b0da_wgs_gdc_realn.bam 79057723249 BAM harmonized CPTAC3 1dcd48c0-d3b4-4655-8954-ff719cc20919 511012405b36ddd218b48a1547d4be4d {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.WGS.N C3L-01286 CCRCC WGS blood_normal CPT0087450002 CPT0087450002.WholeGenome.RP-1303.bam 70732044450 BAM submitted_aligned CPTAC3 2d7cda6e-14d2-4361-8d0c-1b23a4774337 8d6ab47db7dc36df6c09068a272f0d05 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01286.WGS.N.hg38 C3L-01286 CCRCC WGS blood_normal CPT0087450002 d82565ca-eaa7-41fe-8a36-6cd4ec201b64_gdc_realn.bam 105941787422 BAM harmonized CPTAC3 bf602db8-93c8-4773-b99a-7078fae45412 973138a015a03605c15350214d23c3e4 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01286.WGS.T C3L-01286 CCRCC WGS tumor CPT0086950009 CPT0086950009.WholeGenome.RP-1303.bam 67552549913 BAM submitted_aligned CPTAC3 85dafd55-c89e-4ce8-a69e-155d23806c67 dcbfa3a8b98416a0525af540e77c065a {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.WGS.T.hg38 C3L-01286 CCRCC WGS tumor CPT0086950009 055ee558-21d4-4aff-8edd-54f646918acc_gdc_realn.bam 101583923015 BAM harmonized CPTAC3 c58468f9-c36e-4bbb-af61-73e0f75f125d 006aae8bc5729572dbe98c42ee7ba96a {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.WXS.A C3L-01286 CCRCC WXS tissue_normal CPT0086970009 CPT0086970009.WholeExome.RP-1303.bam 41429659386 BAM submitted_aligned CPTAC3 16e163ea-bb0d-49e7-abb5-9e969c580287 f096ebe11672bdf888874bfc19636d75 {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.WXS.A.hg38 C3L-01286 CCRCC WXS tissue_normal CPT0086970009 76a1e6c8-1257-40b0-b2e0-941a1a66b0da_wxs_gdc_realn.bam 55832622700 BAM harmonized CPTAC3 738ac470-1442-499d-949e-ec07e8738a1c 39d11fb345933402dff46953c090cd2f {"aliquot_tag": "ALQ_4401443e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01286.WXS.N C3L-01286 CCRCC WXS blood_normal CPT0087450002 CPT0087450002.WholeExome.RP-1303.bam 30524990035 BAM submitted_aligned CPTAC3 0320078f-441a-4022-8054-801fb802626c d7434b87d2f8b158e9587fbd2551fab8 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01286.WXS.N.hg38 C3L-01286 CCRCC WXS blood_normal CPT0087450002 d82565ca-eaa7-41fe-8a36-6cd4ec201b64_gdc_realn.bam 41430327836 BAM harmonized CPTAC3 c44e27d0-9c27-42c1-8a29-760ae836bab5 ca8c38e7d8e4fa0609b9f54cae8f3c33 {"aliquot_tag": "ALQ_b3fad6bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01286.WXS.T C3L-01286 CCRCC WXS tumor CPT0086950009 CPT0086950009.WholeExome.RP-1303.bam 31052727047 BAM submitted_aligned CPTAC3 815a8e47-a93e-441f-abde-23b93423d09d 626ce0f0cb5d435326ea8df6123674de {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01286.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086950009 055ee558-21d4-4aff-8edd-54f646918acc_gdc_realn.bam 43614684455 BAM harmonized CPTAC3 b7647bbe-e07f-45e9-84e3-1d0073c81f28 2c5cf62ff951ac58c9baabd5ee157953 {"aliquot_tag": "ALQ_3ec1175e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_1f17bad5.miRNA-Seq.S22_L005_R1.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079420009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L005_R1_001.unaln.bam 295681447 BAM S22_L005_R1 submitted_unaligned CPTAC3 b415b5e9-0f18-40bc-a775-76ff89768368 1ba5b2ae546c368ed9bafe44b5d70844 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_1f17bad5.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079420009 b4f80031-9316-4c99-a31f-74effdca81ea_mirnaseq_gdc_realn.bam 323901188 BAM harmonized CPTAC3 c000d894-8dce-4352-bea2-16e204ddab90 6f02ab2aad9d509fc27cdc8d24b45b55 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_1f17bad5.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.chimeric.gdc_realn.bam 234239446 BAM chimeric harmonized CPTAC3 aac9f80d-988a-4555-991c-85ff1a3db48f b75a81d2b06ef121a576afed0511512d {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_1f17bad5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.genomic.gdc_realn.bam 8212188292 BAM genomic harmonized CPTAC3 1c29e8dc-0079-475f-b549-7a9fa011a9ba 32607385d8f5dac0b3f29ea6378abe51 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_1f17bad5.RNA-Seq.S41_L007_R1.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R1_001.fastq.gz 3848758785 FASTQ S41_L007_R1 submitted_unaligned CPTAC3 61a7995b-61cc-4d4c-a894-3cf34cf6428d d95e5224758e8daf721d3024190e3f9a {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_1f17bad5.RNA-Seq.S41_L007_R2.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R2_001.fastq.gz 4414315910 FASTQ S41_L007_R2 submitted_unaligned CPTAC3 0fae67c7-b141-487b-a4af-d45b25b6f81d bf0fca031df63f28a05f799f061f43e4 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_1f17bad5.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.transcriptome.gdc_realn.bam 10705082462 BAM transcriptome harmonized CPTAC3 e2354afd-1e54-4a8e-b078-531b6a0274b2 84116fa03c03a098cf08be910f282a99 {"aliquot_tag": "DUP_1f17bad5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_65d7e9b5.miRNA-Seq.S38_L005_R1.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079400009 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L005_R1_001.unaln.bam 313342157 BAM S38_L005_R1 submitted_unaligned CPTAC3 098a5f29-49cd-4a32-ba63-c8488549e5e5 52ec2debd04b53ac113deb148916598a {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_65d7e9b5.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079400009 89e836ab-cb30-435a-9c66-64939e3252d8_mirnaseq_gdc_realn.bam 349946578 BAM harmonized CPTAC3 1dab0cb1-8f81-4aff-919c-c1bb877657de 3bfa447290c82429c14b799c702c0413 {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_65d7e9b5.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.chimeric.gdc_realn.bam 167757996 BAM chimeric harmonized CPTAC3 cd28fae3-5efb-4259-abb4-2fa80181ccf2 7459f6235410d478edafc9cbc5cf9ec2 {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_65d7e9b5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.genomic.gdc_realn.bam 7929939281 BAM genomic harmonized CPTAC3 9057c15b-ceca-4d3e-b95e-71bcd30e893a 5537b5629098135a0edbd8bf2ba98fdb {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_65d7e9b5.RNA-Seq.S42_L007_R1.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R1_001.fastq.gz 3684659898 FASTQ S42_L007_R1 submitted_unaligned CPTAC3 d65261b4-8bde-4d0e-8575-7eaf615c6e5d 11d1a6c9f3b6bbe9b8bede163cafd22c {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_65d7e9b5.RNA-Seq.S42_L007_R2.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R2_001.fastq.gz 4314615042 FASTQ S42_L007_R2 submitted_unaligned CPTAC3 054227df-d99a-4fe5-a411-061ccb226e8c 11c53a4c81289676b26a7344a44b709f {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_65d7e9b5.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.transcriptome.gdc_realn.bam 11048732152 BAM transcriptome harmonized CPTAC3 c116682f-59a7-4e32-b863-3b7f3b4f3431 cca5331d0e4d0db892cb7e67951e741c {"aliquot_tag": "DUP_65d7e9b5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_91de521c.MethArray.Green.T C3L-01287 CCRCC Methylation_Array tumor CPT0079420012 204367470127_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 3d25a9c8-5e6a-442f-92e0-1df43e0f6f01 f9983238c92621bba2ebc5be0320e141 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_91de521c.MethArray.Red.T C3L-01287 CCRCC Methylation_Array tumor CPT0079420012 204367470127_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 2f8ecc89-5f68-4dc8-aa7f-18098edd5edc cb0802801194fe570ba9fd95f3625815 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_91de521c.WGS.T C3L-01287 CCRCC WGS tumor CPT0079420012 CPT0079420012.WholeGenome.RP-2158.bam 29385157935 BAM submitted_aligned CPTAC3 af5307d9-20fe-41bb-a020-206be88995c6 e806b64a6a04fd1b3e9646382f4d582d {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_91de521c.WGS.T.hg38 C3L-01287 CCRCC WGS tumor CPT0079420012 b633f5e7-ed74-4749-a8c7-8469862e148a_wgs_gdc_realn.bam 88840400832 BAM harmonized CPTAC3 2e33ced0-8140-405c-be51-187c29548aba 3568ced3033f9c366728135ce0f94cc8 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_91de521c.WXS.T C3L-01287 CCRCC WXS tumor CPT0079420012 CPT0079420012.WholeExome.RP-1303.bam 18616711740 BAM submitted_aligned CPTAC3 2112b0a9-7037-4c84-be14-36d997228bf4 39f4aa62d9ff197749151b9b94eb22ba {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_91de521c.WXS.T.hg38 C3L-01287 CCRCC WXS tumor CPT0079420012 b633f5e7-ed74-4749-a8c7-8469862e148a_wxs_gdc_realn.bam 26408331070 BAM harmonized CPTAC3 61d8dd60-193e-4e48-957c-044881c90985 9444bfd76a4b6f12b4e935b79f343392 {"aliquot_tag": "DUP_91de521c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_eb1e017c.MethArray.Green.T C3L-01287 CCRCC Methylation_Array tumor CPT0079400012 204372030011_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 f3a8e55b-36f0-4dc8-90b0-97e107689fd8 82583ad704445cdbdbb64236676b98b4 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_eb1e017c.MethArray.Red.T C3L-01287 CCRCC Methylation_Array tumor CPT0079400012 204372030011_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 327b06ce-2bf4-47c1-b2c2-274db67130a2 9d931a94cd5037b85e109b540a2e4f41 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_eb1e017c.WGS.T C3L-01287 CCRCC WGS tumor CPT0079400012 CPT0079400012.WholeGenome.RP-2158.bam 27466933230 BAM submitted_aligned CPTAC3 1bb59817-5af1-483d-8a79-4aa026930be5 c4a62a82661bce0b7d93cc8e493e54b3 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_eb1e017c.WGS.T.hg38 C3L-01287 CCRCC WGS tumor CPT0079400012 c92a1f84-f7a3-4332-8ab9-b64859f501cf_wgs_gdc_realn.bam 79439566813 BAM harmonized CPTAC3 5c7ec8ba-8b38-47c7-b5d5-fd82bb3774a2 a49f3bbc2e4da818144c43cae37814c8 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_eb1e017c.WXS.T C3L-01287 CCRCC WXS tumor CPT0079400012 CPT0079400012.WholeExome.RP-1303.bam 19704483775 BAM submitted_aligned CPTAC3 b607e677-46be-4a1a-9dc6-953e88ea1638 2c3baa5f7ace8181b827f9d7056c6348 {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.DUP_eb1e017c.WXS.T.hg38 C3L-01287 CCRCC WXS tumor CPT0079400012 c92a1f84-f7a3-4332-8ab9-b64859f501cf_wxs_gdc_realn.bam 26662031760 BAM harmonized CPTAC3 16a1b3db-e208-446c-a4ac-f22b36aa7fd8 6cc1b11202e9ce236c8c1e35469a32eb {"aliquot_tag": "DUP_eb1e017c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.MethArray.Green.T C3L-01287 CCRCC Methylation_Array tumor CPT0079410009 202178770045_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3accc92b-f813-4e0b-ad5e-fb260d344300 1c7c8f8695257d4b72f9f1b06df9b9bc {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.MethArray.Red.T C3L-01287 CCRCC Methylation_Array tumor CPT0079410009 202178770045_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 56eff7b2-bcdd-4eb1-9758-3b553c2b6d27 57a859e71cf11d740b5fcf0281f73bc7 {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.miRNA-Seq.A.hg38 C3L-01287 CCRCC miRNA-Seq tissue_normal CPT0079430006 ee722bb1-db91-46ff-bbf7-989ee5954824_mirnaseq_gdc_realn.bam 242693626 BAM harmonized CPTAC3 9d428339-03c6-493a-ae84-749e238d750e 602c61a2b0725dc56772f14e23e2b3e8 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.miRNA-Seq.S2_L003_R1.A C3L-01287 CCRCC miRNA-Seq tissue_normal CPT0079430006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L003_R1_001.unaln.bam 219604775 BAM S2_L003_R1 submitted_unaligned CPTAC3 11a4b592-52f8-41bc-a8ef-4885dca97bab 676672b128153c720935ab1e6b08b56f {"aliquot_tag": "ALQ_b2c88ef4", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.miRNA-Seq.S4_L001_R1.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079410006 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L001_R1_001.unaln.bam 159949140 BAM S4_L001_R1 submitted_unaligned CPTAC3 384b760a-1bc5-4dac-8c46-b16c3d289001 d02093f0e43fafee76b4671fc0ea6c50 {"aliquot_tag": "ALQ_c808dd94", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079410006 3197d373-5a6f-4e45-bc8e-2f5a6c7186e8_mirnaseq_gdc_realn.bam 183581269 BAM harmonized CPTAC3 78cd47d3-01cf-40a0-846d-eb6712102401 72db28b2372e357e95b2685f51ce651d {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.RNA-Seq.chimeric.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.chimeric.gdc_realn.bam 86909169 BAM chimeric harmonized CPTAC3 1d5c7868-82bc-416a-8cd3-89142eae09bf b40cdb788fd12260713c718db7de7be1 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.chimeric.gdc_realn.bam 151200069 BAM chimeric harmonized CPTAC3 eda17d6d-f9a0-4bb9-b779-a9888210400a b1760ba9aede3628a332e75d48c0e062 {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.RNA-Seq.genomic.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.genomic.gdc_realn.bam 8770191947 BAM genomic harmonized CPTAC3 2bcc7552-a0f6-4edf-8b85-be8054074ed8 5dcdf5751b30d08701a4b44e369e0e59 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.genomic.gdc_realn.bam 7474290808 BAM genomic harmonized CPTAC3 16bdf1e7-f4e1-42cd-a958-23fb4e5681e4 eb7929923b60290775650c2baf2783e2 {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.RNA-Seq.S16_L004_R1.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3997328288 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 ffb43c31-d570-4796-8b3a-fcc3cd19c884 b7ffb509ade29296d2cd5e3aa4f5de09 {"aliquot_tag": "ALQ_c808dd94", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.RNA-Seq.S16_L004_R2.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R2_001.fastq.gz 4217433923 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 123a7b3b-32f8-4460-910d-f05757a239a8 8dc222d65c0fe33bbe5890758209cca6 {"aliquot_tag": "ALQ_c808dd94", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.RNA-Seq.S1_L007_R1.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R1_001.fastq.gz 4432088711 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 35c21dfb-4da7-4c62-961a-5724f2353fa6 93c66831374cb06dcbaad11e9fde49d4 {"aliquot_tag": "ALQ_b2c88ef4", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.RNA-Seq.S1_L007_R2.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R2_001.fastq.gz 4684276351 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 e45e4ad2-c8e1-4c06-81e8-647f36e01b5d 64ae7dcfc12825e67f90bbafeb8399f1 {"aliquot_tag": "ALQ_b2c88ef4", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.RNA-Seq.transcriptome.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.transcriptome.gdc_realn.bam 11724674064 BAM transcriptome harmonized CPTAC3 a7df5e56-90e7-44f1-82db-08b189b19547 801c3f3b70af1d8f23dd3db24601d839 {"aliquot_tag": "ALQ_b2c88ef4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.transcriptome.gdc_realn.bam 11513130066 BAM transcriptome harmonized CPTAC3 3b6662df-abd1-4a97-84b0-4a2d1f3aab4d 14403efadc77dfd5c96a7b4fde712f2c {"aliquot_tag": "ALQ_c808dd94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.scRNA-Seq.S1_L003_R1.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R1_001.fastq.gz 5310421935 FASTQ S1_L003_R1 submitted_unaligned CPTAC3 17ae6831-89e0-48ac-9494-c0eef843ee1b 7a22317d94393a81ff10ce36a767b68a {"aliquot_tag": "ALQ_ffc253cb", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.scRNA-Seq.S1_L003_R2.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R2_001.fastq.gz 19330724940 FASTQ S1_L003_R2 submitted_unaligned CPTAC3 ac65806e-14d3-490f-82ba-695246eb1d4f 00ab2fa11267b6df5834984eff54242b {"aliquot_tag": "ALQ_ffc253cb", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01287.scRNA-Seq.S2_L003_R1.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R1_001.fastq.gz 5772404933 FASTQ S2_L003_R1 submitted_unaligned CPTAC3 c4ab83b0-c2ae-41b4-b8be-8e869ae4a29b aed9ea0bade87afdf697eb6dfe1f1260 {"aliquot_tag": "ALQ_850200ab", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.scRNA-Seq.S2_L003_R2.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R2_001.fastq.gz 20767153821 FASTQ S2_L003_R2 submitted_unaligned CPTAC3 beb30d25-bd64-4eac-a89f-6994cc5c79e2 447d7709baeab287d036a97ad43168c6 {"aliquot_tag": "ALQ_850200ab", "sample": "S2", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.scRNA-Seq.T.hg38 C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 possorted_genome_bam.bam 19460451941 BAM harmonized CPTAC3 ea814df0-bcbd-462c-9d32-8791efe6d671 8695e51973303d29fe98e6d0c49bd90b {"aliquot_tag": "ALQ_850200ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.WGS.A C3L-01287 CCRCC WGS tissue_normal CPT0079430009 CPT0079430009.WholeGenome.RP-1303.bam 56547235872 BAM submitted_aligned CPTAC3 db50ab6f-f97c-4f2e-8f50-5f2aa394cf58 6a9149181c133576f46c726ac5722b27 {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.WGS.A.hg38 C3L-01287 CCRCC WGS tissue_normal CPT0079430009 3d55cf96-5355-4926-a2ad-a0d585794c90_wgs_gdc_realn.bam 82914064751 BAM harmonized CPTAC3 41dac961-197a-4e4e-a974-eb27f7be69a7 bfd9ded39444ac9e2ca459f8c9dd1782 {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.WGS.N C3L-01287 CCRCC WGS blood_normal CPT0080130002 CPT0080130002.WholeGenome.RP-1303.bam 67898864269 BAM submitted_aligned CPTAC3 936e07f1-b6c0-4bf7-bff2-8deb40ae9cc6 19b4ebf9d9df52e3729a87a84dad1093 {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01287.WGS.N.hg38 C3L-01287 CCRCC WGS blood_normal CPT0080130002 5ed32977-dc68-4499-91a2-14b00a4c0c9e_gdc_realn.bam 100728101712 BAM harmonized CPTAC3 29f7f641-3124-4a9f-8ca3-9470781a8cce 4cff788f53e36810742f3e22c0796d3a {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01287.WGS.T C3L-01287 CCRCC WGS tumor CPT0079410009 CPT0079410009.WholeGenome.RP-1303.bam 62240059423 BAM submitted_aligned CPTAC3 b77bb41a-4465-471e-ba89-af4993df7cb0 8ac4acab05c1e1c14dba9cc8ccecb5fd {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.WGS.T.hg38 C3L-01287 CCRCC WGS tumor CPT0079410009 07514a87-8290-46cf-9276-ed86d25cafcb_gdc_realn.bam 93389218671 BAM harmonized CPTAC3 e7f02283-8e98-450f-8c1e-132e9f78cee2 66e07a11a7d0dc1e6f3b15546ebdb55a {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.WXS.A C3L-01287 CCRCC WXS tissue_normal CPT0079430009 CPT0079430009.WholeExome.RP-1303.bam 38075391370 BAM submitted_aligned CPTAC3 e919dd9f-54cc-44ce-91fe-994cd321702f 31627758c7accd77242970fe1f6b4a93 {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.WXS.A.hg38 C3L-01287 CCRCC WXS tissue_normal CPT0079430009 3d55cf96-5355-4926-a2ad-a0d585794c90_wxs_gdc_realn.bam 51929128191 BAM harmonized CPTAC3 97295447-04b9-40eb-a949-97523ed5a81d 9d32a85447151f5a2ea3d9241f605d0b {"aliquot_tag": "ALQ_22779365", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01287.WXS.N C3L-01287 CCRCC WXS blood_normal CPT0080130002 CPT0080130002.WholeExome.RP-1303.bam 25563735605 BAM submitted_aligned CPTAC3 3dca7d9d-4a61-4f5e-b755-95f91bbd6ca3 2d30c42c54aa54380f5ec724dc49a020 {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01287.WXS.N.hg38 C3L-01287 CCRCC WXS blood_normal CPT0080130002 5ed32977-dc68-4499-91a2-14b00a4c0c9e_gdc_realn.bam 34480365456 BAM harmonized CPTAC3 8f61ee95-ee30-47d2-b678-3b345ff918f8 2454f7475519c8e355157183ecc72b8b {"aliquot_tag": "ALQ_a9d08c21", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01287.WXS.T C3L-01287 CCRCC WXS tumor CPT0079410009 CPT0079410009.WholeExome.RP-1303.bam 35485000060 BAM submitted_aligned CPTAC3 4e7b65e8-2d77-41a3-9e4a-0e3c0af81d85 94b61a270fa8bc8371820f3a6238aeeb {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01287.WXS.T.hg38 C3L-01287 CCRCC WXS tumor CPT0079410009 07514a87-8290-46cf-9276-ed86d25cafcb_gdc_realn.bam 48626755556 BAM harmonized CPTAC3 e58d856a-e047-41f2-8700-4a7f61158cd4 f4329505e84451bfd3d0a0d67ecaf261 {"aliquot_tag": "ALQ_58b7c005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.MethArray.Green.T C3L-01288 CCRCC Methylation_Array tumor CPT0079230009 202184900128_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 28d6b96b-846f-4d74-a865-066d2a1d421a 6da87a08c1594b842b0767c04ae42755 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.MethArray.Red.T C3L-01288 CCRCC Methylation_Array tumor CPT0079230009 202184900128_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cdd2b2b3-62be-4dda-9a18-51b2e701105f 5c171d47ccbcba4e7951c79648264267 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.miRNA-Seq.S24_L007_R1.T C3L-01288 CCRCC miRNA-Seq tumor CPT0079230006 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L007_R1_001.unaln.bam 149132347 BAM S24_L007_R1 submitted_unaligned CPTAC3 9a4d074f-077b-4b6a-b4af-9b2c9948d0b5 9474f28fe8007640b5bfe6f02d5d07a4 {"aliquot_tag": "ALQ_64916de9", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.miRNA-Seq.T.hg38 C3L-01288 CCRCC miRNA-Seq tumor CPT0079230006 45d65852-13f3-4d05-99f0-a18e9c9174c7_mirnaseq_gdc_realn.bam 168793325 BAM harmonized CPTAC3 f45471c5-1cf4-4248-b242-8224d5517790 ecdd6e9b09d6bcfed39d7ef3fe5b634d {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.RNA-Seq.chimeric.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.chimeric.gdc_realn.bam 52246743 BAM chimeric harmonized CPTAC3 eb10902a-f88a-4fc1-9a18-c3fff7f44050 90fc93d5b9750b1bb731123cbd815384 {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.RNA-Seq.genomic.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.genomic.gdc_realn.bam 11319138521 BAM genomic harmonized CPTAC3 7ad9fbcb-45ab-4151-9671-7ea590408cac 3b08e91f498a195144bb81c5c27d6f86 {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.RNA-Seq.S6_L002_R1.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 5509930403 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 f10b5dcd-3ffd-4d4c-972b-20ba92377a81 e91482cef71c9cc79b546c7c5aedc694 {"aliquot_tag": "ALQ_64916de9", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.RNA-Seq.S6_L002_R2.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 6071919181 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 2209dd0f-5712-41c4-be2f-0ba58ab9e5fa 03f7b2df5e8c42352f5649f1be15c9e9 {"aliquot_tag": "ALQ_64916de9", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.RNA-Seq.transcriptome.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.transcriptome.gdc_realn.bam 13006831595 BAM transcriptome harmonized CPTAC3 1bdc5f95-392b-45c8-9187-df01d6d04291 ae626de958844d044d88859650794360 {"aliquot_tag": "ALQ_64916de9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.WGS.N C3L-01288 CCRCC WGS blood_normal CPT0080100002 CPT0080100002.WholeGenome.RP-1303.bam 67692111209 BAM submitted_aligned CPTAC3 ef3d1579-93d0-4454-898e-e1e5f5be3404 da302559aa00b38746492c059389d197 {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01288.WGS.N.hg38 C3L-01288 CCRCC WGS blood_normal CPT0080100002 1e21fdd2-dd02-487f-abdb-65cb903a98a8_gdc_realn.bam 100846997469 BAM harmonized CPTAC3 96d483cc-1a1f-458b-a88f-6e118f623f95 266fdeab6895e3382c42835c9d92a1ab {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01288.WGS.T C3L-01288 CCRCC WGS tumor CPT0079230009 CPT0079230009.WholeGenome.RP-1303.bam 65734262723 BAM submitted_aligned CPTAC3 4ffd0e06-626b-47b4-9ae2-7bf50f08d41a 684f746f144eda0a6b96bbae5a87331f {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.WGS.T.hg38 C3L-01288 CCRCC WGS tumor CPT0079230009 2d4e2a23-1ec6-4c78-a6d2-7ad28408eaf1_gdc_realn.bam 97224628121 BAM harmonized CPTAC3 8c9e2f29-7b5b-44bd-8573-cbe28288cc8a b6fa90374085fb837bc7d9f9c01ed5f7 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.WXS.N C3L-01288 CCRCC WXS blood_normal CPT0080100002 CPT0080100002.WholeExome.RP-1303.bam 29128019620 BAM submitted_aligned CPTAC3 b095fe94-306d-4d74-aef1-ff2c955eb758 9ca829159ace6f205f997c44cc360fed {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01288.WXS.N.hg38 C3L-01288 CCRCC WXS blood_normal CPT0080100002 1e21fdd2-dd02-487f-abdb-65cb903a98a8_gdc_realn.bam 39908849913 BAM harmonized CPTAC3 30271039-79b2-4395-8541-6dea8620563e 29f42b0753ce70eac83b61b8b10e6107 {"aliquot_tag": "ALQ_ee70f6f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01288.WXS.T C3L-01288 CCRCC WXS tumor CPT0079230009 CPT0079230009.WholeExome.RP-1303.bam 36706443166 BAM submitted_aligned CPTAC3 199cae48-66ce-475a-8a83-8f690d2b615e 6c2cc357d248ac1df26352abf6c8ef23 {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01288.WXS.T.hg38 C3L-01288 CCRCC WXS tumor CPT0079230009 2d4e2a23-1ec6-4c78-a6d2-7ad28408eaf1_gdc_realn.bam 50558535263 BAM harmonized CPTAC3 793b9e3b-e9e1-4cb9-b6d1-be313f148496 9e713a92b3b1e574dd995feca282a68c {"aliquot_tag": "ALQ_f42e7078", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01291.MethArray.Green.Tbm C3L-01291 AML Methylation_Array tumor_bone_marrow CPT0099810002 202234370079_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 56e7c98e-a198-48dd-95e2-d307afe98c41 7ba9ac503d0406bb0328ff78e9ead15f {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.MethArray.Red.Tbm C3L-01291 AML Methylation_Array tumor_bone_marrow CPT0099810002 202234370079_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 16db58d2-c935-464b-9a9e-a45ebd7fc70a b19ec7798c66b91ec31fc4e97107d61c {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.miRNA-Seq.S34_L007_R1.Tbm C3L-01291 AML miRNA-Seq tumor_bone_marrow CPT0099790002 180828_UNC32-K00270_0112_AHWTLNBBXX_CAAAAG_S34_L007_R1_001.unaln.bam 164805317 BAM S34_L007_R1 submitted_unaligned CPTAC3 4941b821-201b-49fb-a6fc-84edac279fea ebf5d6066ebf62dbb887a9bb071db61d {"aliquot_tag": "ALQ_6c0b32d0", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.miRNA-Seq.Tbm.hg38 C3L-01291 AML miRNA-Seq tumor_bone_marrow CPT0099790002 27bfb728-b328-4fd1-bb28-074920b66f5b_mirnaseq_gdc_realn.bam 179499135 BAM harmonized CPTAC3 56a109fa-774d-46c1-8100-7b6d982b416d 84d1f9216bbedcebb6c50d4ed2ea4b1f {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.RNA-Seq.chimeric.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.chimeric.gdc_realn.bam 30330179 BAM chimeric harmonized CPTAC3 8ed5822a-0479-4bce-a9ea-447b77e0e912 4441efb70ab70c0c0cffb83b0c465b11 {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.RNA-Seq.genomic.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.genomic.gdc_realn.bam 10736691195 BAM genomic harmonized CPTAC3 21ac8878-d58e-42e8-b79a-1e96c125d3ef e074cc07c30a81edcdc9dd47ee771c69 {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.RNA-Seq.S15_L004_R1.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R1_001.fastq.gz 4011534935 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 8b726895-9862-4f65-a913-2df01d1a57e0 78164f4784045199a0184fe99545ca24 {"aliquot_tag": "ALQ_6c0b32d0", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.RNA-Seq.S15_L004_R2.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R2_001.fastq.gz 4152938671 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 64d7172a-a162-4a19-99a4-9eadddc740ed d9d9ccd15045658b0f3017d958aa1cef {"aliquot_tag": "ALQ_6c0b32d0", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.RNA-Seq.transcriptome.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.transcriptome.gdc_realn.bam 8531366846 BAM transcriptome harmonized CPTAC3 a2f98dc9-4b60-49be-b841-53481b62f315 4d29376a661b9a40352489e1c7838db2 {"aliquot_tag": "ALQ_6c0b32d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.WGS.Nbc C3L-01291 AML WGS buccal_normal CPT0099850002 CPT0099850002.WholeGenome.RP-1303.bam 58351280119 BAM submitted_aligned CPTAC3 5a6b11d5-bf6f-4299-a58c-46f34444fe54 6ecf883ac6a248ea7af52306c464a262 {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01291.WGS.Nbc.hg38 C3L-01291 AML WGS buccal_normal CPT0099850002 b6a573c2-ac71-49ff-b6d8-37af02a19190_wgs_gdc_realn.bam 87081454542 BAM harmonized CPTAC3 64af057d-dddd-4424-910c-d04e4aa2254e acf20e5a59d8449a15191509c280f48e {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01291.WGS.Tbm C3L-01291 AML WGS tumor_bone_marrow CPT0099810002 CPT0099810002.WholeGenome.RP-1303.bam 61415592115 BAM submitted_aligned CPTAC3 da4a7ade-b8f0-4dbe-acfd-fb4705b4ff9e a46407a89046b399f9337cd03e41257a {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.WGS.Tbm.hg38 C3L-01291 AML WGS tumor_bone_marrow CPT0099810002 3705c530-4e59-4f9d-8670-937aea579564_wgs_gdc_realn.bam 91241409196 BAM harmonized CPTAC3 1a5442a8-1e85-42b4-912f-93073a8b589a c8bfb6c3e50202d0cde2106e70e1cbfb {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.WXS.Nbc C3L-01291 AML WXS buccal_normal CPT0099850002 CPT0099850002.WholeExome.RP-1303.bam 31781536296 BAM submitted_aligned CPTAC3 c8a6968d-e486-4975-af04-ad36908e6c94 af414d47e1bd8b311a5b2d7b20a7aa94 {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01291.WXS.Nbc.hg38 C3L-01291 AML WXS buccal_normal CPT0099850002 b6a573c2-ac71-49ff-b6d8-37af02a19190_wxs_gdc_realn.bam 43126659337 BAM harmonized CPTAC3 ce1cd257-2854-48af-b7e7-0e6abe9c0ddc 26b72c84031fd71434cdc60dd76cc65d {"aliquot_tag": "ALQ_58ad6d04", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01291.WXS.Tbm C3L-01291 AML WXS tumor_bone_marrow CPT0099810002 CPT0099810002.WholeExome.RP-1303.bam 50013254965 BAM submitted_aligned CPTAC3 0a70f6a2-646b-4aca-9a20-b637fe496005 89cd8d39b8783ea61e11065b1c5c1ee0 {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01291.WXS.Tbm.hg38 C3L-01291 AML WXS tumor_bone_marrow CPT0099810002 3705c530-4e59-4f9d-8670-937aea579564_wxs_gdc_realn.bam 68238529569 BAM harmonized CPTAC3 29d40427-ebf5-4487-993e-99d03f36a7d2 c0c46678fa9549b512f579f6516613d1 {"aliquot_tag": "ALQ_ad2dcbc4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.MethArray.Green.Tbm C3L-01295 AML Methylation_Array tumor_bone_marrow CPT0099560002 203561450041_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d9145ffe-4346-41c8-8759-2a7685b303ea ed39029cf9a28bcf8eff19dd0e16d58a {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.MethArray.Red.Tbm C3L-01295 AML Methylation_Array tumor_bone_marrow CPT0099560002 203561450041_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 60b3c41f-ba1e-4e6c-8dd5-fe906a72e9c7 09db68e9359f19cba46cbc7fb2f4f84f {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.miRNA-Seq.S18_L001_R1.Tbm C3L-01295 AML miRNA-Seq tumor_bone_marrow CPT0099620002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 223961762 BAM S18_L001_R1 submitted_unaligned CPTAC3 6845511c-51d2-4798-8d85-605c81779be5 ad70d18887f8aae6fe9270a121c37119 {"aliquot_tag": "ALQ_d087d064", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.miRNA-Seq.Tbm.hg38 C3L-01295 AML miRNA-Seq tumor_bone_marrow CPT0099620002 31740841-2cf4-4c63-b232-5c92beac050e_mirnaseq_gdc_realn.bam 246973616 BAM harmonized CPTAC3 ba2e9140-1a3d-4d91-b2fa-36e18f3eed6c e0830ba2aef5c5bd1e347f6e36a4a542 {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.RNA-Seq.chimeric.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.chimeric.gdc_realn.bam 25448865 BAM chimeric harmonized CPTAC3 43cd3f1c-b5c1-4f37-bed3-d2347025c2e0 97384711a56566e36bff1ce63467edd9 {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.RNA-Seq.genomic.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.genomic.gdc_realn.bam 7236075199 BAM genomic harmonized CPTAC3 e2b99947-4d6f-4531-b351-8b943dc2a576 e8bf92b70978e9656152db713b68816f {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.RNA-Seq.S37_L006_R1.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R1_001.fastq.gz 3345270077 FASTQ S37_L006_R1 submitted_unaligned CPTAC3 316b0d56-7a4e-4eea-967f-5f9121bcc64e a6050176a86af92bedf2fe46c11d0d40 {"aliquot_tag": "ALQ_d087d064", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.RNA-Seq.S37_L006_R2.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R2_001.fastq.gz 3949844136 FASTQ S37_L006_R2 submitted_unaligned CPTAC3 afdc6d9d-0099-4f29-8952-6be3a1bc0bbb 66c3990a6d1c039d6ab528a117241f8f {"aliquot_tag": "ALQ_d087d064", "sample": "S37", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.RNA-Seq.transcriptome.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.transcriptome.gdc_realn.bam 9797479170 BAM transcriptome harmonized CPTAC3 4cbf7064-6ceb-4594-8882-1ed2616518fc 84d7a548c5537492b6a65a03c7f42be0 {"aliquot_tag": "ALQ_d087d064", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.WGS.Nbc C3L-01295 AML WGS buccal_normal CPT0099640002 CPT0099640002.WholeGenome.RP-1303.bam 76761225904 BAM submitted_aligned CPTAC3 3bddb539-0a22-4d55-9a18-6c66904ab784 1cb0305de7784767c8970f1590c261fe {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01295.WGS.Nbc.hg38 C3L-01295 AML WGS buccal_normal CPT0099640002 d594d3a4-c362-45a5-9283-92b99a78469d_wgs_gdc_realn.bam 109628472544 BAM harmonized CPTAC3 c224d7f9-818d-4419-bfcc-ba20830a688d 7f4d5e8387cdcf37d720b9d7697d8a60 {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002_1 CPT0099560002_1.WholeGenome.RP-1303.bam 68763622262 BAM submitted_aligned CPTAC3 078f15a6-9fab-4bb8-9138-0e57a1759319 31554b889b5d9f6db6d8dc43edf9eb87 {"aliquot_tag": "ALQ_d0a6dc5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 CPT0099560002.WholeGenome.RP-1303.bam 23922175268 BAM submitted_aligned CPTAC3 a049a44a-1bf7-4741-bc21-66ace36d90a6 be7f66ebb2ca2193bc197fcebbe7a969 {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.WGS.Tbm.hg38 C3L-01295 AML WGS tumor_bone_marrow CPT0099560002_1 3205a569-ab23-4c2e-9e2f-1a47c4450295_wgs_gdc_realn.bam 99827023129 BAM harmonized CPTAC3 89be8230-404f-41ec-8b81-c223f12201bd 1934411b7a3ea1c44764c0a3b4baa616 {"aliquot_tag": "ALQ_d0a6dc5e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-01295.WGS.Tbm.hg38 C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 fc805067-c5dc-4e24-85cc-f584a58b2728_wgs_gdc_realn.bam 34126293284 BAM harmonized CPTAC3 5d51ea11-528e-49dc-8ffd-d1b6f4d15a59 e165039de7a40b065eee395a87321bdb {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.WXS.Nbc C3L-01295 AML WXS buccal_normal CPT0099640002 CPT0099640002.WholeExome.RP-1303.bam 22563264860 BAM submitted_aligned CPTAC3 2c75c437-a748-4e8d-a82a-900eec51eaf3 b1a2289886dd037e8573b9e3b2d510b2 {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01295.WXS.Nbc.hg38 C3L-01295 AML WXS buccal_normal CPT0099640002 d594d3a4-c362-45a5-9283-92b99a78469d_wxs_gdc_realn.bam 32074188187 BAM harmonized CPTAC3 c0286d1a-54de-4aa6-a763-290c5d4d7436 23b1f0fe6698e6280e7a1a7ca5a49b91 {"aliquot_tag": "ALQ_5fc725c4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01295.WXS.Tbm C3L-01295 AML WXS tumor_bone_marrow CPT0099560002 CPT0099560002.WholeExome.RP-1303.bam 23922175342 BAM submitted_aligned CPTAC3 66c7f637-442c-4825-9596-fb054bf01e2e 953adbe6cbbd02bad0fe404a477483ad {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01295.WXS.Tbm.hg38 C3L-01295 AML WXS tumor_bone_marrow CPT0099560002 fc805067-c5dc-4e24-85cc-f584a58b2728_wxs_gdc_realn.bam 34518957797 BAM harmonized CPTAC3 9b4a0fda-6245-4696-95e2-236053b5f6d9 f20a56aca0e8e01aba1c4238f82411fb {"aliquot_tag": "ALQ_a393040a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.MethArray.Green.Tbm C3L-01296 AML Methylation_Array tumor_bone_marrow CPT0099700002 202234360028_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2fb014e2-fd77-4dde-a8ab-b55543574b7a d553fcabdff70f7f1e19b37d91dd68e0 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.MethArray.Red.Tbm C3L-01296 AML Methylation_Array tumor_bone_marrow CPT0099700002 202234360028_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 2ebb1b1c-a115-49e2-a32c-2f408ec94d59 4b7b84a516695178752030d59e6b1745 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.miRNA-Seq.S33_L007_R1.Tbm C3L-01296 AML miRNA-Seq tumor_bone_marrow CPT0099680002 180828_UNC32-K00270_0112_AHWTLNBBXX_ATTCCT_S33_L007_R1_001.unaln.bam 204384371 BAM S33_L007_R1 submitted_unaligned CPTAC3 eff0d314-1628-4c18-8ce1-5a906e53f873 c4f55634747facfb312f4a1ff2983a5a {"aliquot_tag": "ALQ_9a37c8c5", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.miRNA-Seq.Tbm.hg38 C3L-01296 AML miRNA-Seq tumor_bone_marrow CPT0099680002 6e25f2a9-6a91-4373-86b5-39d92dd56b92_mirnaseq_gdc_realn.bam 228160966 BAM harmonized CPTAC3 e44a077d-e7dc-4b58-8428-bb1ea794037e 6bebc987d14515be12132c678b49f94a {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.RNA-Seq.chimeric.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.chimeric.gdc_realn.bam 40155333 BAM chimeric harmonized CPTAC3 71816ce7-6d4e-476a-aab8-7fd0776b22dc 9c2a01d1ae24bb10c55c135f0b91b329 {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.RNA-Seq.genomic.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.genomic.gdc_realn.bam 9528587497 BAM genomic harmonized CPTAC3 bb82b0d7-38cf-4f81-9436-ec1edb2857be ae3dd1f3ac93d1ab677d628b6468c276 {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.RNA-Seq.S12_L004_R1.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R1_001.fastq.gz 4352150797 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 3dc35af9-cc1a-4e33-9653-245460e0ff17 6f12fb2f8e62b2d2dc1210163ae6cbd8 {"aliquot_tag": "ALQ_9a37c8c5", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.RNA-Seq.S12_L004_R2.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R2_001.fastq.gz 4602841642 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 bf7675cf-0611-47f4-a8b5-ac33d7823daf 86b66306b85d3886b53892c6a246129b {"aliquot_tag": "ALQ_9a37c8c5", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.RNA-Seq.transcriptome.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.transcriptome.gdc_realn.bam 8312413627 BAM transcriptome harmonized CPTAC3 d18a211d-5533-4dbc-b651-9b2b1bfc8a99 aa57f377ef2d05e27f797dc4d1598fe0 {"aliquot_tag": "ALQ_9a37c8c5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.WGS.Nbc C3L-01296 AML WGS buccal_normal CPT0099710002 CPT0099710002.WholeGenome.RP-1303.bam 64723290652 BAM submitted_aligned CPTAC3 ec32edcd-460e-45e1-8f04-a73377524120 605fa54479b288add03bb07bf4f87ddc {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01296.WGS.Nbc.hg38 C3L-01296 AML WGS buccal_normal CPT0099710002 31ff8266-efb4-40b9-a2a8-4ada70d0214b_wgs_gdc_realn.bam 101000745877 BAM harmonized CPTAC3 6119f941-dd13-4396-b18f-fcd7301ec242 52c846a6e87ddb67d6e73c34a3ace011 {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01296.WGS.Tbm C3L-01296 AML WGS tumor_bone_marrow CPT0099700002 CPT0099700002.WholeGenome.RP-1303.bam 60635436675 BAM submitted_aligned CPTAC3 bac22b68-25d3-42d5-bd60-97133cca97cd f2c15786da68d8879159fb10dc35a028 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.WGS.Tbm.hg38 C3L-01296 AML WGS tumor_bone_marrow CPT0099700002 163018aa-1ddb-491b-aee7-e7c8e3404e02_wgs_gdc_realn.bam 89908601730 BAM harmonized CPTAC3 2f18abf7-fc76-485c-ae37-838137ae7ab1 12f65982f14d452d1c091aa6eb4c2cdd {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.WXS.Nbc C3L-01296 AML WXS buccal_normal CPT0099710002 CPT0099710002.WholeExome.RP-1303.bam 38668913230 BAM submitted_aligned CPTAC3 7c88daf5-a0f5-4016-bc0b-8a6ca67a6477 9f1829106b9349f714a635361da4f2b5 {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01296.WXS.Nbc.hg38 C3L-01296 AML WXS buccal_normal CPT0099710002 31ff8266-efb4-40b9-a2a8-4ada70d0214b_wxs_gdc_realn.bam 52304144298 BAM harmonized CPTAC3 59dbd329-6f4d-4083-a95a-7fda90c46df9 412bd4bb5ee003ce383b452ba8e00ad2 {"aliquot_tag": "ALQ_5c7b7911", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01296.WXS.Tbm C3L-01296 AML WXS tumor_bone_marrow CPT0099700002 CPT0099700002.WholeExome.RP-1303.bam 38263904488 BAM submitted_aligned CPTAC3 656f9f4c-8cc6-4563-9754-0ca0b8a3ca1e 0633633aa725405f8be4892d5f4117f7 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01296.WXS.Tbm.hg38 C3L-01296 AML WXS tumor_bone_marrow CPT0099700002 163018aa-1ddb-491b-aee7-e7c8e3404e02_wxs_gdc_realn.bam 52523286014 BAM harmonized CPTAC3 95be4e99-82b0-4a37-b764-9403df736448 5026781b49efbc31c4ff9ced3e17bb28 {"aliquot_tag": "ALQ_611b50a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01302.MethArray.Green.A C3L-01302 CCRCC Methylation_Array tissue_normal CPT0063640009 204930640083_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9d43a624-14c4-4f7b-8afa-179cd4815474 bec2395d08eee9953de723869655e407 {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.MethArray.Green.T C3L-01302 CCRCC Methylation_Array tumor CPT0063630006 202184900140_R08C01_Grn.idat 13676261 IDAT Green NA CPTAC3 358ac1f3-c2f6-4238-9936-ce3af059d439 a5aba19ac192df60a04840c447c74e13 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.MethArray.Red.A C3L-01302 CCRCC Methylation_Array tissue_normal CPT0063640009 204930640083_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 23436783-c5d7-47fb-808a-57d4d338f14e f0a212a42006bc1a4e5a7ede3c88566a {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.MethArray.Red.T C3L-01302 CCRCC Methylation_Array tumor CPT0063630006 202184900140_R08C01_Red.idat 13676261 IDAT Red NA CPTAC3 7ab0866e-1690-47f9-9b29-d460b5965c3f f724e972e8f9b6905efd23d63b08e02d {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.miRNA-Seq.A.hg38 C3L-01302 CCRCC miRNA-Seq tissue_normal CPT0063640006 37239aec-6d6a-45c5-8346-d6c96f5f9fad_mirnaseq_gdc_realn.bam 217023543 BAM harmonized CPTAC3 3b262e48-353f-4662-9568-d0a103c63655 0582eee2b0f5c12d96b368bb8f29edcc {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.miRNA-Seq.S13_L003_R1.T C3L-01302 CCRCC miRNA-Seq tumor CPT0063630008 181113_UNC31-K00269_0164_AH23NNBBXY_CGGAAT_S13_L003_R1_001.unaln.bam 245071630 BAM S13_L003_R1 submitted_unaligned CPTAC3 e6651836-5233-4bb7-9b9f-eb5df7e25347 15c1286b8d0140c3bc0c5b1462d3dd9e {"aliquot_tag": "ALQ_70625d28", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.miRNA-Seq.S47_L004_R1.A C3L-01302 CCRCC miRNA-Seq tissue_normal CPT0063640006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGAAG_S47_L004_R1_001.unaln.bam 192691031 BAM S47_L004_R1 submitted_unaligned CPTAC3 7855e183-5531-4958-a275-231672fbadc0 ff8c356cba5e7d418bedfee9f36e5574 {"aliquot_tag": "ALQ_25faac3f", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.miRNA-Seq.T.hg38 C3L-01302 CCRCC miRNA-Seq tumor CPT0063630008 429a0241-f773-4042-aaac-fc43c77e9446_mirnaseq_gdc_realn.bam 273796446 BAM harmonized CPTAC3 fce57a82-222a-46ed-9bd8-8b28253d54a4 54abbbb03bf050b1acc085e76c91e152 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.RNA-Seq.chimeric.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.chimeric.gdc_realn.bam 82615566 BAM chimeric harmonized CPTAC3 2fed6653-4f54-4e23-ae92-d8249a05d549 dc781a131b487f2144ad24dd20e3ae1e {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.RNA-Seq.chimeric.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.chimeric.gdc_realn.bam 39680750 BAM chimeric harmonized CPTAC3 c2060b0e-83bb-4c85-abfb-60c9a4dae55c 5b3a39686144d4a4ee6364008f1f4027 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.RNA-Seq.genomic.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.genomic.gdc_realn.bam 9505579073 BAM genomic harmonized CPTAC3 77648444-c206-4e88-b6ea-674bff67941c 01001e015783cb902f6a334db05fce6e {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.RNA-Seq.genomic.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.genomic.gdc_realn.bam 8999034324 BAM genomic harmonized CPTAC3 f7bc271f-d936-4e7c-bdd3-995b0a951957 82c8165a32aa31bd4b73a74f5ecbcac8 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.RNA-Seq.S18_L005_R1.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R1_001.fastq.gz 4463196137 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 1557a8aa-c6e9-4a10-8481-ef3e858bacc1 ca3906a4679aab622ef17bb0da32aae9 {"aliquot_tag": "ALQ_70625d28", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.RNA-Seq.S18_L005_R2.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R2_001.fastq.gz 4786222120 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 061c0b4a-2f52-49b7-8d34-fa4960c9bead 660f996c7f83a0024a95cd8ec5b399ab {"aliquot_tag": "ALQ_70625d28", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.RNA-Seq.S23_L008_R1.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R1_001.fastq.gz 4760766335 FASTQ S23_L008_R1 submitted_unaligned CPTAC3 fdb44060-23a7-4e59-a702-a5283b8bee2d 834a24370ebae93d0a53955b20efd25e {"aliquot_tag": "ALQ_25faac3f", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.RNA-Seq.S23_L008_R2.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R2_001.fastq.gz 5222034489 FASTQ S23_L008_R2 submitted_unaligned CPTAC3 b22a8f99-90ba-40b6-9a43-dad2607758d8 d9958fc21931bcfc6164dcd664f9bcb8 {"aliquot_tag": "ALQ_25faac3f", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.RNA-Seq.transcriptome.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.transcriptome.gdc_realn.bam 12684334705 BAM transcriptome harmonized CPTAC3 61078b84-26b0-4e00-9bc8-615df09c55c2 a45ab195a452f763f567b7f3184901fe {"aliquot_tag": "ALQ_25faac3f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.RNA-Seq.transcriptome.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.transcriptome.gdc_realn.bam 11594598277 BAM transcriptome harmonized CPTAC3 607104a6-3b49-465c-b64e-b726ebac44c7 3878f1e80c1f1f9bbe815aa5748a1315 {"aliquot_tag": "ALQ_70625d28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.WGS.A C3L-01302 CCRCC WGS tissue_normal CPT0063640009 CPT0063640009.WholeGenome.RP-1303.bam 54531714605 BAM submitted_aligned CPTAC3 fce2654f-cc83-45fe-bbe4-88b9575e364d cdfd9b532ecf6085bdbb2e13fcad6f1b {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.WGS.A.hg38 C3L-01302 CCRCC WGS tissue_normal CPT0063640009 bddf8de7-d36e-4ca2-bb9e-a120a6626a4d_wgs_gdc_realn.bam 79407212649 BAM harmonized CPTAC3 9a44d465-5c23-467d-aab9-b511c28f5946 2909a643221fbb4a18aa4053facf762c {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.WGS.N C3L-01302 CCRCC WGS blood_normal CPT0065290002 CPT0065290002.WholeGenome.RP-1303.bam 72151680228 BAM submitted_aligned CPTAC3 525102e5-40da-477a-83e7-7a1003b62d0a 477726db84d5b4486776f247d9072836 {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01302.WGS.N.hg38 C3L-01302 CCRCC WGS blood_normal CPT0065290002 5574f004-37c9-4009-826f-ed228d1cdf46_gdc_realn.bam 108660008377 BAM harmonized CPTAC3 f692e57d-ea3f-4774-b5ab-659e80fd1158 9d95c7a7611e5e4540d5417444eab2a8 {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01302.WGS.T C3L-01302 CCRCC WGS tumor CPT0063630006 CPT0063630006.WholeGenome.RP-1303.bam 71570929239 BAM submitted_aligned CPTAC3 31653ed4-9db1-4026-b25f-cd6e2a583fff aab58e6ff77642f63dd7191f291928e9 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.WGS.T.hg38 C3L-01302 CCRCC WGS tumor CPT0063630006 d38dd99a-b263-46fa-a4e7-c98a1e795486_gdc_realn.bam 110086960509 BAM harmonized CPTAC3 d3ab66da-9f01-46c2-8219-22706f867ad2 586e8a9299a74d3667149e20e1c13c48 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.WXS.A C3L-01302 CCRCC WXS tissue_normal CPT0063640009 CPT0063640009.WholeExome.RP-1303.bam 33454183168 BAM submitted_aligned CPTAC3 8d2149fe-77ed-40e0-af94-256b516602bd 41aafe4176e286827ba617934c937646 {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.WXS.A.hg38 C3L-01302 CCRCC WXS tissue_normal CPT0063640009 bddf8de7-d36e-4ca2-bb9e-a120a6626a4d_wxs_gdc_realn.bam 45720867099 BAM harmonized CPTAC3 2824de9a-b455-4718-a372-62716a0e949f 8abdac87d061a4c37ab42d1d7beb7b92 {"aliquot_tag": "ALQ_b545b1ae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01302.WXS.N C3L-01302 CCRCC WXS blood_normal CPT0065290002 CPT0065290002.WholeExome.RP-1303.bam 27393249999 BAM submitted_aligned CPTAC3 f5fed662-c35b-4503-ac76-88facbe769d6 ab1140c58b724a3a778c99dc4bccee10 {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01302.WXS.N.hg38 C3L-01302 CCRCC WXS blood_normal CPT0065290002 5574f004-37c9-4009-826f-ed228d1cdf46_gdc_realn.bam 36976231244 BAM harmonized CPTAC3 12676e7d-1514-4931-8e91-855e1cc3169d 4ff10c1c8476bdcad18b5dba6cf9a1ae {"aliquot_tag": "ALQ_2246dbbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01302.WXS.T C3L-01302 CCRCC WXS tumor CPT0063630006 CPT0063630006.WholeExome.RP-1303.bam 28702584205 BAM submitted_aligned CPTAC3 da44fd61-c27e-4453-a7c6-dc3111cbb434 0a570215036d351096761136041760c7 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01302.WXS.T.hg38 C3L-01302 CCRCC WXS tumor CPT0063630006 d38dd99a-b263-46fa-a4e7-c98a1e795486_gdc_realn.bam 38571518807 BAM harmonized CPTAC3 d891cd39-a2a4-4c81-b8db-35da9d0188f3 c57ea97d26a540a94424dc1c6c3fa0b9 {"aliquot_tag": "ALQ_97da702f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.MethArray.Green.T C3L-01304 UCEC Methylation_Array tumor CPT0064210006 202176290145_R07C01_Grn.idat 13676225 IDAT Green NA CPTAC3 708a1828-e677-4e09-b0e5-920bdc9397fd 5f24936a53daf8bf20da61c0f9da7b41 {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.MethArray.Red.T C3L-01304 UCEC Methylation_Array tumor CPT0064210006 202176290145_R07C01_Red.idat 13676225 IDAT Red NA CPTAC3 ef84bc18-6452-472c-bc14-44eeec0ea02b 37346d9c4cac51baf7dfd6da48c086fa {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.miRNA-Seq.A.hg38 C3L-01304 UCEC miRNA-Seq tissue_normal CPT0064240006 b482bb54-1a6a-4b1d-be90-b6e1cf2f2e8a_mirnaseq_gdc_realn.bam 340105062 BAM harmonized CPTAC3 7cc7083e-64f0-464a-9266-f5a2d3dc4acc 7fbd9556787a123a224667ae0eb9c647 {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.miRNA-Seq.S7_L006_R1.A C3L-01304 UCEC miRNA-Seq tissue_normal CPT0064240006 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L006_R1_001.unaln.bam 306760222 BAM S7_L006_R1 submitted_unaligned CPTAC3 3d7de543-bc0e-47a0-b17c-210a719f47d7 2375e815b98d06b1c6de424fcb761de3 {"aliquot_tag": "ALQ_7bccd0a7", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.miRNA-Seq.S9_L003_R1.T C3L-01304 UCEC miRNA-Seq tumor CPT0064210009 181113_UNC31-K00269_0164_AH23NNBBXY_CAGGCG_S9_L003_R1_001.unaln.bam 192983593 BAM S9_L003_R1 submitted_unaligned CPTAC3 e3e8d63f-89a8-4ee8-964c-03f9d5c6d5da cde149e92e8f4b08e38716bb99fd6442 {"aliquot_tag": "ALQ_23934246", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.miRNA-Seq.T.hg38 C3L-01304 UCEC miRNA-Seq tumor CPT0064210009 fa1301f4-557f-43d5-ad43-cbc52228f68b_mirnaseq_gdc_realn.bam 209807970 BAM harmonized CPTAC3 5d052749-1297-4a7a-a28d-e3b18fb87b8d 05c5737f7ddc990a003deecb5e266e5e {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.chimeric.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.chimeric.gdc_realn.bam 145502872 BAM chimeric harmonized CPTAC3 b36c9cda-1b7e-4de7-92a2-9173e8ae708d cb09ced6c80f9bafe939fd13846a95c8 {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.RNA-Seq.chimeric.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.chimeric.gdc_realn.bam 30617955 BAM chimeric harmonized CPTAC3 f34b20e4-c978-450b-b3b6-199776dfafd9 366841fb7e13eaa119021c0519eea234 {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.chimeric.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.chimeric.gdc_realn.bam 272050564 BAM chimeric harmonized CPTAC3 4533f48f-e2f4-4050-9487-c09395b09b55 9929050f29c6718c4f9716f22ba86550 {"aliquot_tag": "ALQ_5e4c3c1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.genomic.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.genomic.gdc_realn.bam 9176137857 BAM genomic harmonized CPTAC3 bbe94b72-3cbc-4549-b696-917a0afd89af 134e951fce1976b6c1659d5aa00f12cd {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.RNA-Seq.genomic.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.genomic.gdc_realn.bam 8171274027 BAM genomic harmonized CPTAC3 7bf4aa8f-916b-4b5f-af38-184d26a65a51 2ae306d9ac1b245d64755969f2ddfc8a {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.genomic.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.genomic.gdc_realn.bam 13040293482 BAM genomic harmonized CPTAC3 4dde8489-0320-4f59-bc10-6f43ae92d581 8193132728d370a442a55b3800c09f1b {"aliquot_tag": "ALQ_5e4c3c1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.S21_L006_R1.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R1_001.fastq.gz 3796845587 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 2c0d1a81-0278-4dcf-99b1-8b846369e7a2 6f2201edc2b985abf0157fc34fb77f4c {"aliquot_tag": "ALQ_23934246", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.S21_L006_R2.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R2_001.fastq.gz 4071894153 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 06f5c317-1033-4c7a-b439-095b129762d6 44043ee45cc72e68674581e5dadda24b {"aliquot_tag": "ALQ_23934246", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.S38_R1.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R1_001.fastq.gz 7713671923 FASTQ S38_R1 submitted_unaligned CPTAC3 c114febc-6ef4-4c4a-8058-afef0e30d834 38eab746c7cc22283e75c50f40c6e1a8 {"aliquot_tag": "ALQ_5e4c3c1a", "sample": "S38", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.S38_R2.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R2_001.fastq.gz 7866103332 FASTQ S38_R2 submitted_unaligned CPTAC3 e40e052c-bd9e-4551-8c7f-f0437c260e39 eb281d5c100ea9d34d4e279d2c196008 {"aliquot_tag": "ALQ_5e4c3c1a", "sample": "S38", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.S3_L001_R1.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R1_001.fastq.gz 4128559320 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 fb12c9f3-e9e4-4234-b1ea-b652ea9e064d 1262f3df654e8927fa130cf296bddb36 {"aliquot_tag": "ALQ_7bccd0a7", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.RNA-Seq.S3_L001_R2.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R2_001.fastq.gz 4712930558 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 9272b657-6b27-4628-adff-898271064f68 549196aad6f244bb99468d4b500d5068 {"aliquot_tag": "ALQ_7bccd0a7", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.RNA-Seq.transcriptome.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.transcriptome.gdc_realn.bam 10477901118 BAM transcriptome harmonized CPTAC3 fab9f52f-f2e6-438c-83b5-b4c76fef7fc9 2947cfa832c90c2b99277892b2a62bb0 {"aliquot_tag": "ALQ_7bccd0a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.RNA-Seq.transcriptome.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.transcriptome.gdc_realn.bam 8746992454 BAM transcriptome harmonized CPTAC3 a00e97b8-eb7c-459a-9f3d-12f951ac2d29 b1b30244beca54b8e145d0831051c397 {"aliquot_tag": "ALQ_23934246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.RNA-Seq.transcriptome.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.transcriptome.gdc_realn.bam 6270689646 BAM transcriptome harmonized CPTAC3 9fc830a3-969d-4fae-8ffe-184b2450750d 0ec57a02f6af2e88487b4ebaae5398c2 {"aliquot_tag": "ALQ_5e4c3c1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.WGS.A C3L-01304 UCEC WGS tissue_normal CPT0064240009 CPT0064240009.WholeGenome.RP-1303.bam 51306084781 BAM submitted_aligned CPTAC3 dfd2667d-e4b4-4fe6-9cc4-39e87e65637a 827473cfd79b4d88b7697968f10ca7fe {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.WGS.A.hg38 C3L-01304 UCEC WGS tissue_normal CPT0064240009 fd423c83-6aaf-431a-8d73-d73f358928cb_wgs_gdc_realn.bam 77117474013 BAM harmonized CPTAC3 6c3358e5-f144-4dff-af39-440329b2eec6 3e5f0b3b2b45944f94802bad013512c3 {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.WGS.N C3L-01304 UCEC WGS blood_normal CPT0065400002 CPT0065400002.WholeGenome.RP-1303.bam 72928606541 BAM submitted_aligned CPTAC3 48de75d2-2757-494f-8280-98b81e98b4f9 39c2fb2f423443959f268084b31e0075 {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01304.WGS.N.hg38 C3L-01304 UCEC WGS blood_normal CPT0065400002 3f01a5d9-4b5b-4aa5-a6db-3d2786936bde_gdc_realn.bam 113321539042 BAM harmonized CPTAC3 105d699b-2118-4678-8fe5-c056e33b374b 650c4d37287f0365bb861be99fb4d16b {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01304.WGS.T C3L-01304 UCEC WGS tumor CPT0064210006 CPT0064210006.WholeGenome.RP-1303.bam 78924246395 BAM submitted_aligned CPTAC3 e4418310-9a6f-4e01-a655-08cc87058882 5922adda7fc758169f892cd7443dbd3d {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.WGS.T.hg38 C3L-01304 UCEC WGS tumor CPT0064210006 3866d5e5-efed-427b-bc34-b5a9bb070eb6_gdc_realn.bam 122310009125 BAM harmonized CPTAC3 f61a20f0-253a-4b03-822e-17e43cd61cd4 2d56c21133828083a1d79e0c08572ec6 {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.WXS.A C3L-01304 UCEC WXS tissue_normal CPT0064240009 CPT0064240009.WholeExome.RP-1303.bam 35372706891 BAM submitted_aligned CPTAC3 361452bc-480a-463c-bd99-832657c2b91a 5094cd8d05108df6ca31d03474783f1e {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.WXS.A.hg38 C3L-01304 UCEC WXS tissue_normal CPT0064240009 fd423c83-6aaf-431a-8d73-d73f358928cb_wxs_gdc_realn.bam 47352439152 BAM harmonized CPTAC3 dc2f1cf3-0ad4-4dae-ae77-b9569121bd12 19a00cb59ed6fb4fe5a74f178377abae {"aliquot_tag": "ALQ_eb73cd36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01304.WXS.N C3L-01304 UCEC WXS blood_normal CPT0065400002 CPT0065400002.WholeExome.RP-1303.bam 29499082808 BAM submitted_aligned CPTAC3 b490469f-6983-4d55-b6f8-b884587b3bfc 3307ef8978f2ddaf18ad63ee95a2eff3 {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01304.WXS.N.hg38 C3L-01304 UCEC WXS blood_normal CPT0065400002 3f01a5d9-4b5b-4aa5-a6db-3d2786936bde_gdc_realn.bam 39556371465 BAM harmonized CPTAC3 abdfac63-1c07-4f0b-878b-e230e90fa27a 91295a24b2b704f72dd33472bf199e47 {"aliquot_tag": "ALQ_f90f5ad7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01304.WXS.T C3L-01304 UCEC WXS tumor CPT0064210006 CPT0064210006.WholeExome.RP-1303.bam 33181523891 BAM submitted_aligned CPTAC3 16007f80-3a3a-47cd-95c6-eb725c6db78c 4120686667e7bb1840c8be04eebf9e5e {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01304.WXS.T.hg38 C3L-01304 UCEC WXS tumor CPT0064210006 3866d5e5-efed-427b-bc34-b5a9bb070eb6_gdc_realn.bam 45757606642 BAM harmonized CPTAC3 3df8fea4-d4ec-484d-a89c-33fe123dedc8 45fa5d4416358182aa7ca7ffdd8beaa3 {"aliquot_tag": "ALQ_b32c5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.MethArray.Green.T C3L-01307 UCEC Methylation_Array tumor CPT0064290007 202184990013_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 07134e7a-cede-4844-84ac-4f3d165fdb6d fcda67c64fbbb83753bdf45484025694 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.MethArray.Red.T C3L-01307 UCEC Methylation_Array tumor CPT0064290007 202184990013_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6ff9d82e-49c7-44e7-9ebf-440c5a58c981 2e19176e11e60cca2dc00ce4140c8cd7 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.miRNA-Seq.A.hg38 C3L-01307 UCEC miRNA-Seq tissue_normal CPT0064320006 e21af149-a3f3-47d8-88d4-91e9fb64a536_mirnaseq_gdc_realn.bam 261314566 BAM harmonized CPTAC3 e20d3d35-ea3e-4d27-a0af-003822cb3fa2 46b1ef4a68dca5516781e655657563e3 {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.miRNA-Seq.S6_L005_R1.T C3L-01307 UCEC miRNA-Seq tumor CPT0064290010 181119_UNC31-K00269_0165_AH27WCBBXY_CACCGG_S6_L005_R1_001.unaln.bam 242466279 BAM S6_L005_R1 submitted_unaligned CPTAC3 a4c2f102-fa71-4db8-84a5-00f605e56ab2 fbaaa9c5716979e11bbead5e9a738e03 {"aliquot_tag": "ALQ_73248062", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.miRNA-Seq.S8_L006_R1.A C3L-01307 UCEC miRNA-Seq tissue_normal CPT0064320006 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L006_R1_001.unaln.bam 223927271 BAM S8_L006_R1 submitted_unaligned CPTAC3 594643fb-9194-4465-b0d8-aa705d3dcf79 6794f6dfb1f550e3eea31c9274557917 {"aliquot_tag": "ALQ_3fd0f6a2", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.miRNA-Seq.T.hg38 C3L-01307 UCEC miRNA-Seq tumor CPT0064290010 ea57121d-52ad-4d55-9c0a-58036fc976dc_mirnaseq_gdc_realn.bam 263452475 BAM harmonized CPTAC3 37468c3c-69bd-45e0-9ca1-e6c8bce709df acce7c00e625252b6e4f1c0697c0e8da {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.chimeric.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.chimeric.gdc_realn.bam 51068073 BAM chimeric harmonized CPTAC3 606d940b-1b19-401f-ab37-61288b7ae517 44b63231c069221a87c2a7df33bd14bd {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.RNA-Seq.chimeric.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.chimeric.gdc_realn.bam 25818318 BAM chimeric harmonized CPTAC3 28cb6cd2-4790-4359-9974-133894caa5b5 ffedcf31a2a041121b3637b3834ec609 {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.chimeric.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.chimeric.gdc_realn.bam 251487502 BAM chimeric harmonized CPTAC3 aa78218b-dd01-41ef-aea0-f00ea39387b2 35fa90dd5f6f0230296489176e0a3d18 {"aliquot_tag": "ALQ_a6dcf8ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.genomic.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.genomic.gdc_realn.bam 7629721973 BAM genomic harmonized CPTAC3 96239e4f-6e09-4866-8194-eab8bc3e3a50 d9e99b0b97485db31002e36b8e1af71b {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.RNA-Seq.genomic.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.genomic.gdc_realn.bam 8504785377 BAM genomic harmonized CPTAC3 4accf41b-0a00-45b2-b55b-bf1bd045c4f3 10989975e146f21cce9f553f2297958e {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.genomic.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.genomic.gdc_realn.bam 12715573127 BAM genomic harmonized CPTAC3 adc68649-9239-4234-a4b7-5cb87ed40680 03a846b05f576d305f8dcd2542614061 {"aliquot_tag": "ALQ_a6dcf8ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.S23_L006_R1.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 3544549729 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 7eae300f-fe7f-4059-876c-659d575a8f34 d9083db11e8d95ed29853119c2840627 {"aliquot_tag": "ALQ_73248062", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.S23_L006_R2.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 3814839038 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 9ad113e3-3bed-4906-a9d0-adc6e81379b4 1165c13796ba9c5c61101ec5a399f029 {"aliquot_tag": "ALQ_73248062", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.S2_L001_R1.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R1_001.fastq.gz 3555781101 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 636ef258-acbd-443f-99c4-8966ebf303af 56a95f391518662af36b081d90da9b64 {"aliquot_tag": "ALQ_3fd0f6a2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.RNA-Seq.S2_L001_R2.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R2_001.fastq.gz 4035262942 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 8b68efdb-23b2-4936-8426-1d26933f64a5 926db222d273df86768252ab576ec3de {"aliquot_tag": "ALQ_3fd0f6a2", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.RNA-Seq.S6_R1.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R1_001.fastq.gz 7130401343 FASTQ S6_R1 submitted_unaligned CPTAC3 12e75f64-1024-486b-a2f2-c5ac91f686a9 0aadaab03bdcfa6e190b3b2e14e258c7 {"aliquot_tag": "ALQ_a6dcf8ab", "sample": "S6", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.S6_R2.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R2_001.fastq.gz 7271813472 FASTQ S6_R2 submitted_unaligned CPTAC3 4c195d07-8889-4931-8640-43d82b4a8980 f9ed4fec112123140fdff1d1ad1ab8bc {"aliquot_tag": "ALQ_a6dcf8ab", "sample": "S6", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.transcriptome.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.transcriptome.gdc_realn.bam 9810130636 BAM transcriptome harmonized CPTAC3 40cb9726-0b5d-4e15-96ca-40cd38f2eb7f 5cfed833d07790c09ac9714d6459de85 {"aliquot_tag": "ALQ_3fd0f6a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.RNA-Seq.transcriptome.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.transcriptome.gdc_realn.bam 8420796920 BAM transcriptome harmonized CPTAC3 a0a87df8-f7a9-4750-8bb0-97a63d55e5c3 3ed38774a505a86fae85e4031aaf5e79 {"aliquot_tag": "ALQ_73248062", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.RNA-Seq.transcriptome.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.transcriptome.gdc_realn.bam 6556240377 BAM transcriptome harmonized CPTAC3 206703f0-488e-4a8a-9d48-c902f9ec3989 a100f7ae1835e4c68847dd0080c40768 {"aliquot_tag": "ALQ_a6dcf8ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.WGS.A C3L-01307 UCEC WGS tissue_normal CPT0064320009 CPT0064320009.WholeGenome.RP-1303.bam 68419765531 BAM submitted_aligned CPTAC3 79d6ad3c-2b59-462f-9757-5fa72f1c582c f571d62c265f86101014c297e4ea1a37 {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.WGS.A.hg38 C3L-01307 UCEC WGS tissue_normal CPT0064320009 31bfb1b0-4534-4f58-ad1c-77ca6cd3ffbe_wgs_gdc_realn.bam 99278989048 BAM harmonized CPTAC3 414b2b53-2c2a-4fac-8822-d56bf42d8914 b6d194349edcde0027432c9aaa76581a {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.WGS.N C3L-01307 UCEC WGS blood_normal CPT0065410002 CPT0065410002.WholeGenome.RP-1303.bam 82558697786 BAM submitted_aligned CPTAC3 11093004-4cec-48c3-9144-c14118e21192 66868665750d62465bf00abb7ec1c7d8 {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01307.WGS.N.hg38 C3L-01307 UCEC WGS blood_normal CPT0065410002 40844e74-4b1b-46ff-a4ea-d8f743dce828_gdc_realn.bam 129569422027 BAM harmonized CPTAC3 ac906496-2d2a-4621-b8f6-c4ee338878d8 e4df34036860890f16b1c1fc19469f24 {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01307.WGS.T C3L-01307 UCEC WGS tumor CPT0064290007 CPT0064290007.WholeGenome.RP-1303.bam 85876861238 BAM submitted_aligned CPTAC3 19cdb27b-ae67-4bd7-9d28-e350b5d1f7c4 6e2269244a4c7adf00dd86a0ae2d2997 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.WGS.T.hg38 C3L-01307 UCEC WGS tumor CPT0064290007 c764cdc8-80c6-4b7a-a170-309fe582f17e_gdc_realn.bam 130657765184 BAM harmonized CPTAC3 ae515f49-8fe2-4239-a18a-241d6cb28f2d df95b664ea177a6c3e9065f7d99d7dbf {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.WXS.A C3L-01307 UCEC WXS tissue_normal CPT0064320009 CPT0064320009.WholeExome.RP-1303.bam 29159627485 BAM submitted_aligned CPTAC3 f7e3de87-876e-4489-85e3-35c751520108 970171288762894ed6e7706345fdd9f2 {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.WXS.A.hg38 C3L-01307 UCEC WXS tissue_normal CPT0064320009 31bfb1b0-4534-4f58-ad1c-77ca6cd3ffbe_wxs_gdc_realn.bam 39437623653 BAM harmonized CPTAC3 7c419047-ddb0-4f20-a71c-8a6ec782e741 0d03b86eeb626e509b692e47db35698c {"aliquot_tag": "ALQ_af6feb33", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01307.WXS.N C3L-01307 UCEC WXS blood_normal CPT0065410002 CPT0065410002.WholeExome.RP-1303.bam 28387073560 BAM submitted_aligned CPTAC3 347e1925-154e-4498-9fd8-9761a9429e33 36702fa0a596ceb67172c9ed48008b14 {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01307.WXS.N.hg38 C3L-01307 UCEC WXS blood_normal CPT0065410002 40844e74-4b1b-46ff-a4ea-d8f743dce828_gdc_realn.bam 38685675474 BAM harmonized CPTAC3 88cb812e-8dbb-4315-b15d-2209fadb6c43 40ff908b2903357fe193199b4d66c31e {"aliquot_tag": "ALQ_c46f7367", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01307.WXS.T C3L-01307 UCEC WXS tumor CPT0064290007 CPT0064290007.WholeExome.RP-1303.bam 27894006956 BAM submitted_aligned CPTAC3 a183c0c4-67d7-4c30-9c5e-3d7bbf8e8e02 84679cafdab56d4679b84397acefb188 {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01307.WXS.T.hg38 C3L-01307 UCEC WXS tumor CPT0064290007 c764cdc8-80c6-4b7a-a170-309fe582f17e_gdc_realn.bam 38574187176 BAM harmonized CPTAC3 25baf71c-839d-4432-9960-59f47e1c37d7 90bc3f914a8e5ba3820dabdab4db151b {"aliquot_tag": "ALQ_f45b2480", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.MethArray.Green.T C3L-01311 UCEC Methylation_Array tumor CPT0077770013 202163550007_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a1d12177-b44a-46c8-957a-1b9a91b80b90 fc6a39ffc92644b5ef4fd706d7d9681c {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.MethArray.Red.T C3L-01311 UCEC Methylation_Array tumor CPT0077770013 202163550007_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 037b5b91-d633-4858-8e90-516b4d68793d 49b6c360e4eac9d589b639428d9cb1e8 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.miRNA-Seq.A.hg38 C3L-01311 UCEC miRNA-Seq tissue_normal CPT0077780006 30ed4d25-e17c-4705-b4d4-57cca75465bf_mirnaseq_gdc_realn.bam 251923275 BAM harmonized CPTAC3 23296869-3f11-4568-9ac4-f6f0393b5329 84222dc7b711b99e0fdb7f8d4ba0cebd {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.miRNA-Seq.S23_L007_R1.T C3L-01311 UCEC miRNA-Seq tumor CPT0077770006 181012_UNC32-K00270_0124_AH223CBBXY_CGATGT_S23_L007_R1_001.unaln.bam 279800636 BAM S23_L007_R1 submitted_unaligned CPTAC3 5899ae4e-6f9e-4f95-bf07-c2802d547cb8 684ac9733c60cd32f343d4d8265103dc {"aliquot_tag": "ALQ_91e321c7", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.miRNA-Seq.S4_L006_R1.A C3L-01311 UCEC miRNA-Seq tissue_normal CPT0077780006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L006_R1_001.unaln.bam 224512143 BAM S4_L006_R1 submitted_unaligned CPTAC3 12e70d8a-1a82-4ac6-9773-9f1647918cb9 31fcb5c3c4fa6572374be6180191ad08 {"aliquot_tag": "ALQ_13b3b616", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.miRNA-Seq.T.hg38 C3L-01311 UCEC miRNA-Seq tumor CPT0077770006 c4cec702-2a15-4315-8a3c-559d3c2243f8_mirnaseq_gdc_realn.bam 313353360 BAM harmonized CPTAC3 8a98ede5-315c-43e5-b16e-8ff4c80c7591 63f0e304526f9e4a2afde4e882d4ba0d {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.chimeric.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.chimeric.gdc_realn.bam 139650560 BAM chimeric harmonized CPTAC3 48afa087-478a-4c9f-bcc8-4cad98ebc34b b634de80285375b734d682d184e1a4cb {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.RNA-Seq.chimeric.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.chimeric.gdc_realn.bam 172410517 BAM chimeric harmonized CPTAC3 0c75c3cf-50e8-4eb6-b3ba-0dcf679c8a67 ff9efb36245c2f5b8701e6b1ad3021ef {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.chimeric.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.chimeric.gdc_realn.bam 197448413 BAM chimeric harmonized CPTAC3 55f4ee24-73dc-44d2-992a-6886eba79056 c2c5ee04ac41814398bc68b0d63f2b2f {"aliquot_tag": "ALQ_6090497f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.genomic.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.genomic.gdc_realn.bam 8507029863 BAM genomic harmonized CPTAC3 f7b48b5f-af28-48b3-8dcf-21924924a42e f43035ed5d7bd0a9c245eae51fd74b3a {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.RNA-Seq.genomic.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.genomic.gdc_realn.bam 8518332242 BAM genomic harmonized CPTAC3 51ef905e-ffb6-4d76-8e88-d5216ddd2509 f74b97aa9e1d50bc102d3d97cedea8aa {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.genomic.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.genomic.gdc_realn.bam 9488373231 BAM genomic harmonized CPTAC3 6995645a-6603-4f9f-81dc-7be65068ed38 6dfc19bf7a0d883788fb886f68781943 {"aliquot_tag": "ALQ_6090497f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.S12_L003_R1.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R1_001.fastq.gz 4125388941 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 391b8dfd-1857-41ff-8af2-ea0830668f60 b4ed34ecfec57540151a185a7c998536 {"aliquot_tag": "ALQ_91e321c7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.S12_L003_R2.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4477169908 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 5b4f8676-cead-4e7a-b932-58fb3d37f3a1 95fba85ae6b9d7d6548a736e8e8db3da {"aliquot_tag": "ALQ_91e321c7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.S6_L002_R1.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R1_001.fastq.gz 4055784418 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 46a9c137-590c-40f8-83a9-848a8d0437a5 68d00a6f09931f5e051fcb0d445ca958 {"aliquot_tag": "ALQ_13b3b616", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.RNA-Seq.S6_L002_R2.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R2_001.fastq.gz 4516971985 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 7bcd0306-0e63-4202-88b1-1ed2497e3547 6c5e7e0df2ed004d82923b6c5ef2d475 {"aliquot_tag": "ALQ_13b3b616", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.RNA-Seq.S88_R1.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R1_001.fastq.gz 6177807684 FASTQ S88_R1 submitted_unaligned CPTAC3 f0441d62-5b57-436f-9024-09fdb1312f4a e722f1fadf82e8ad4c9c7226cfaeef34 {"aliquot_tag": "ALQ_6090497f", "sample": "S88", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.S88_R2.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R2_001.fastq.gz 6375668356 FASTQ S88_R2 submitted_unaligned CPTAC3 e64eac34-5a52-4ed5-a7c8-ab8841b16c69 5ce5f69c445db083389086c9d3d88c19 {"aliquot_tag": "ALQ_6090497f", "sample": "S88", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.transcriptome.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.transcriptome.gdc_realn.bam 9840938984 BAM transcriptome harmonized CPTAC3 3f1a626b-5e02-497a-80ad-4ff633bc2911 90c0e2764a36319ee9f5690dbdbd497f {"aliquot_tag": "ALQ_13b3b616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.RNA-Seq.transcriptome.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.transcriptome.gdc_realn.bam 11280475073 BAM transcriptome harmonized CPTAC3 f0f40f39-a6da-4da1-8fad-8e9d7c9a9677 4fc3eab76c2b83e34625fbae5ec0d366 {"aliquot_tag": "ALQ_91e321c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.RNA-Seq.transcriptome.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.transcriptome.gdc_realn.bam 5060040897 BAM transcriptome harmonized CPTAC3 c956bd5f-c932-47f4-8b3c-acc87bdbf130 10550093ee493aca6e0936ad79cae2ba {"aliquot_tag": "ALQ_6090497f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.WGS.A C3L-01311 UCEC WGS tissue_normal CPT0077780009 CPT0077780009.WholeGenome.RP-1303.bam 51982784575 BAM submitted_aligned CPTAC3 f140760d-3c58-4cda-856d-334d58cfb2e2 73944346b013ec120e9fba76b8fb6c4f {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.WGS.A.hg38 C3L-01311 UCEC WGS tissue_normal CPT0077780009 86110805-316c-40e9-b3f6-1801b343cf7b_wgs_gdc_realn.bam 77353099444 BAM harmonized CPTAC3 4d910b82-92f6-42e4-a27f-2e134d0a894f 0881274e85ac6368006ada4220d24ae1 {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.WGS.N C3L-01311 UCEC WGS blood_normal CPT0080090002 CPT0080090002.WholeGenome.RP-1303.bam 63605626281 BAM submitted_aligned CPTAC3 663f16bf-4fc8-4e95-9a89-90facb986d7c 68a800564f7106404ed8e9c99c9b935f {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01311.WGS.N.hg38 C3L-01311 UCEC WGS blood_normal CPT0080090002 20730bb0-a420-4cc3-91ea-80c765ccd3cf_gdc_realn.bam 96932135255 BAM harmonized CPTAC3 d373e6d9-c4a8-4c0b-953d-49aa71477f7f 20080f46b2f05d74acaf1dc285c3ad11 {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01311.WGS.T C3L-01311 UCEC WGS tumor CPT0077770013 CPT0077770013.WholeGenome.RP-1303.bam 59591177517 BAM submitted_aligned CPTAC3 b565a608-3019-41c6-a015-7549626b03f6 09dfa5d60b9ceba1bbd9be36ba983b23 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.WGS.T.hg38 C3L-01311 UCEC WGS tumor CPT0077770013 b56bd2bb-ba83-4a80-835e-1c42b477fb0a_gdc_realn.bam 88896147208 BAM harmonized CPTAC3 9b170866-2a3a-4ad9-bc1e-cf0d2804648c e2baba26b60857b1f992096a5f911336 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.WXS.A C3L-01311 UCEC WXS tissue_normal CPT0077780009 CPT0077780009.WholeExome.RP-1303.bam 32431469010 BAM submitted_aligned CPTAC3 70230cba-5a36-4c1d-9c76-12a6e0b34af1 b3243b4302e3d6c098f9b0528018bd13 {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.WXS.A.hg38 C3L-01311 UCEC WXS tissue_normal CPT0077780009 86110805-316c-40e9-b3f6-1801b343cf7b_wxs_gdc_realn.bam 44443850256 BAM harmonized CPTAC3 07cb7b76-b359-4681-bcfa-28ee682197b2 99f3b993f7036971554dd41a939d3949 {"aliquot_tag": "ALQ_830cab87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01311.WXS.N C3L-01311 UCEC WXS blood_normal CPT0080090002 CPT0080090002.WholeExome.RP-1303.bam 28632828882 BAM submitted_aligned CPTAC3 cf8616a6-22c6-4235-80b4-9e85d9f6ad40 ff35e77040602c0270ce5b51d3e7a6e7 {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01311.WXS.N.hg38 C3L-01311 UCEC WXS blood_normal CPT0080090002 20730bb0-a420-4cc3-91ea-80c765ccd3cf_gdc_realn.bam 39721766046 BAM harmonized CPTAC3 1186aea4-bfdd-45ef-bc0a-683c289fd617 988be087a9f99901cda098bb30284b2f {"aliquot_tag": "ALQ_283c4725", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01311.WXS.T C3L-01311 UCEC WXS tumor CPT0077770013 CPT0077770013.WholeExome.RP-1303.bam 31241352549 BAM submitted_aligned CPTAC3 11cc9aab-415f-42be-9fd2-f9e4d9b0e21c 4df409a4d5f78240e5c12157f370d911 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01311.WXS.T.hg38 C3L-01311 UCEC WXS tumor CPT0077770013 b56bd2bb-ba83-4a80-835e-1c42b477fb0a_gdc_realn.bam 42837152533 BAM harmonized CPTAC3 b56d2614-afdd-4be1-8629-69a7cf24d6ce b64adfa6b2d5857c64e8a4ed0a299db0 {"aliquot_tag": "ALQ_f892e409", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.MethArray.Green.T C3L-01312 UCEC Methylation_Array tumor CPT0063670006 202184990063_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7e031175-be9b-4c61-9282-e9191861924b f4c1a7dba40c74f7b78ee94acbfbd20b {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.MethArray.Red.T C3L-01312 UCEC Methylation_Array tumor CPT0063670006 202184990063_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 a7db2c15-4a19-40b0-b0d6-4a205e46ad59 ae619626592082372da1c9134dc483ab {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.miRNA-Seq.S11_L003_R1.T C3L-01312 UCEC miRNA-Seq tumor CPT0063670009 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGGCC_S11_L003_R1_001.unaln.bam 335971058 BAM S11_L003_R1 submitted_unaligned CPTAC3 e7f4bba8-f1fe-44fd-a59e-b57367b586a6 d4d28e1ba7b6db1b3d3dec29e3573d59 {"aliquot_tag": "ALQ_f2e5cb7e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.miRNA-Seq.T.hg38 C3L-01312 UCEC miRNA-Seq tumor CPT0063670009 4d40f8e1-8327-4d33-bf81-ce287c04b086_mirnaseq_gdc_realn.bam 366281372 BAM harmonized CPTAC3 38d39888-62da-40fb-a17f-fd85c69ca7fa 6f72c44568bc7312877c7cd90b65b9ca {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.chimeric.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.chimeric.gdc_realn.bam 35009826 BAM chimeric harmonized CPTAC3 dc958f85-338f-46da-866e-0c5be631351d cc5f3dc1e33a8a38ff6de25e3633b034 {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.chimeric.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.chimeric.gdc_realn.bam 111928471 BAM chimeric harmonized CPTAC3 b831018b-5dea-4c27-bf10-b1bf04b8df0b 3a649323e2cb22c8c2550aa591019036 {"aliquot_tag": "ALQ_5df060cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.genomic.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.genomic.gdc_realn.bam 8806227526 BAM genomic harmonized CPTAC3 5f2d09f6-084f-4623-983b-3dd81be032bb 6cb8b0ff2f274e98e2e1508b074f9e3b {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.genomic.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.genomic.gdc_realn.bam 5934755667 BAM genomic harmonized CPTAC3 a3bb00e9-b296-4967-b002-151f861ca95e b8dc3c7393e43eb9da96dc7ae9bb9aab {"aliquot_tag": "ALQ_5df060cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.S6_L008_R1.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4294742113 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 bcbd006a-fd60-43db-905d-aa6e729f314a 1586574a96d8358b8d3a0adc95a5126a {"aliquot_tag": "ALQ_f2e5cb7e", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.S6_L008_R2.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 4571900403 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 f3db77a2-db19-4942-8c2e-3b69f81a956b 94122c45f1902b6bb6e30b9a161ad66e {"aliquot_tag": "ALQ_f2e5cb7e", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.S93_R1.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R1_001.fastq.gz 3293285610 FASTQ S93_R1 submitted_unaligned CPTAC3 1086fe42-7b9a-4e51-ae28-ad047ae45940 dcc7bba3d34e2615c1d40424bca060b6 {"aliquot_tag": "ALQ_5df060cf", "sample": "S93", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.S93_R2.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R2_001.fastq.gz 3410281180 FASTQ S93_R2 submitted_unaligned CPTAC3 33574452-d1cb-4331-b99a-ce281a7fd7ec f5a8e12d1fbab56cfbadc84230a2755a {"aliquot_tag": "ALQ_5df060cf", "sample": "S93", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.transcriptome.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.transcriptome.gdc_realn.bam 12044310676 BAM transcriptome harmonized CPTAC3 95656a10-6ddd-41f7-9053-32763798b318 8fc19ffdf24b498f42f6c37ae0f28cd1 {"aliquot_tag": "ALQ_f2e5cb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.RNA-Seq.transcriptome.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.transcriptome.gdc_realn.bam 2839108855 BAM transcriptome harmonized CPTAC3 98dee3b4-f428-4f63-aa88-0e9c6b8093dd e5a14f8197ef3f1d0ab89e4e0b37aacc {"aliquot_tag": "ALQ_5df060cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.WGS.N C3L-01312 UCEC WGS blood_normal CPT0065300002 CPT0065300002.WholeGenome.RP-1303.bam 63433344995 BAM submitted_aligned CPTAC3 2e824a60-afa4-4bce-b300-2704302d6be1 de910e770dd86d82247cbc588cd7c7ff {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01312.WGS.N.hg38 C3L-01312 UCEC WGS blood_normal CPT0065300002 21d6d362-118e-4dfe-9130-7aeb1bf82058_gdc_realn.bam 95091191377 BAM harmonized CPTAC3 76e906be-7778-4801-9ae9-6200be0649d4 ddca55caedf3485d6834c064c3a01297 {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01312.WGS.T C3L-01312 UCEC WGS tumor CPT0063670006 CPT0063670006.WholeGenome.RP-1303.bam 71881836416 BAM submitted_aligned CPTAC3 322484a4-e91b-494d-a6c1-c31c6c218369 ab463fd668cffdaeff5f1e0aa1a997cf {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.WGS.T.hg38 C3L-01312 UCEC WGS tumor CPT0063670006 36a47ab1-152f-4078-855e-82e726b1778f_gdc_realn.bam 112424600224 BAM harmonized CPTAC3 5eacf3e4-6cc2-48d0-ac48-cdd70d4f591b 2204ab91fc86fa3d7a99944760537a9c {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.WXS.N C3L-01312 UCEC WXS blood_normal CPT0065300002 CPT0065300002.WholeExome.RP-1303.bam 26389205103 BAM submitted_aligned CPTAC3 f4e766bd-7f64-420a-9972-da5865c8deb0 4ca3dc8368620b81fa6c502a1855f162 {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01312.WXS.N.hg38 C3L-01312 UCEC WXS blood_normal CPT0065300002 21d6d362-118e-4dfe-9130-7aeb1bf82058_gdc_realn.bam 35415091350 BAM harmonized CPTAC3 142a53dc-3e84-4a26-8b71-e3c0926a54b7 444a29c6f13fccc01823c3c406fa47fc {"aliquot_tag": "ALQ_e40a6a6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01312.WXS.T C3L-01312 UCEC WXS tumor CPT0063670006 CPT0063670006.WholeExome.RP-1303.bam 39966626130 BAM submitted_aligned CPTAC3 3761c9f6-ed8b-461c-b3a9-4d657d4a503c edf79d95b405f20320c1fc4a2c85acd5 {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01312.WXS.T.hg38 C3L-01312 UCEC WXS tumor CPT0063670006 36a47ab1-152f-4078-855e-82e726b1778f_gdc_realn.bam 55759767131 BAM harmonized CPTAC3 c03828a8-c41d-4fc6-a3ba-6ec5908a4f7a 269d9ddbd25bedfd022e8310438dce49 {"aliquot_tag": "ALQ_625ad6ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.MethArray.Green.A C3L-01313 CCRCC Methylation_Array tissue_normal CPT0086830009 204930640023_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 80472c8c-9600-4080-a14b-c11b204e2887 b5db1f4dd00ad66429529e7b8f0c9349 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.MethArray.Green.T C3L-01313 CCRCC Methylation_Array tumor CPT0086820009 202184990066_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1230aad5-4680-4138-baf2-33b96500b9cc be35c9ac0d2dac99ca6e1d49d1073c4b {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.MethArray.Red.A C3L-01313 CCRCC Methylation_Array tissue_normal CPT0086830009 204930640023_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 937e6d30-7cc1-4939-9e76-270553101819 b9f254bb5bfd97afe265d83fd33685e2 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.MethArray.Red.T C3L-01313 CCRCC Methylation_Array tumor CPT0086820009 202184990066_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 bfdf6ffa-d768-45b9-9790-702d9d55cb8a 59f47c96b83890e38198a65c31189ac0 {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.miRNA-Seq.A.hg38 C3L-01313 CCRCC miRNA-Seq tissue_normal CPT0086830006 c1b9066d-3de9-4ff1-b2ee-0e570749b670_mirnaseq_gdc_realn.bam 218048315 BAM harmonized CPTAC3 7a76515b-e440-4349-bdd5-fc8c71269f5e 6ec6824d21a64d748379eb2e6bf17fc8 {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.miRNA-Seq.S13_L008_R1.T C3L-01313 CCRCC miRNA-Seq tumor CPT0086820006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L008_R1_001.unaln.bam 197906171 BAM S13_L008_R1 submitted_unaligned CPTAC3 915b50fb-1893-43e0-ad93-8700605bd8bf 1246b8831bd1a981795781e9d3129e32 {"aliquot_tag": "ALQ_d702057a", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.miRNA-Seq.S14_L005_R1.A C3L-01313 CCRCC miRNA-Seq tissue_normal CPT0086830006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L005_R1_001.unaln.bam 191457892 BAM S14_L005_R1 submitted_unaligned CPTAC3 951eb655-9535-42b2-9fbf-4184d779cac1 68c2b8372630329528ef7f7ff59ac96c {"aliquot_tag": "ALQ_ea622cca", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.miRNA-Seq.T.hg38 C3L-01313 CCRCC miRNA-Seq tumor CPT0086820006 a27e2d9d-f555-4914-af17-a0dc87ebb2bd_mirnaseq_gdc_realn.bam 217922284 BAM harmonized CPTAC3 7f271074-ce07-4dec-9c49-2b5d31494b29 acb91b5908c4bf12d3adc0d6230a82fa {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.RNA-Seq.chimeric.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.chimeric.gdc_realn.bam 100727254 BAM chimeric harmonized CPTAC3 48f4bf52-0191-4cb6-ad9b-7c9da13078c7 bc6b76bdaa18e0aae6410aa9988c9c2f {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.RNA-Seq.chimeric.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.chimeric.gdc_realn.bam 33125804 BAM chimeric harmonized CPTAC3 ccaa2820-38f9-41f4-aef4-5e71acfccb0f 0e164daa4ffebb6c1a9f96118ba73273 {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.RNA-Seq.genomic.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.genomic.gdc_realn.bam 7524182379 BAM genomic harmonized CPTAC3 f90df0c9-b7fc-48cd-9fee-5219d4c1a7f2 e40a34778bc048fadf2fae1594b42b78 {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.RNA-Seq.genomic.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.genomic.gdc_realn.bam 6936812821 BAM genomic harmonized CPTAC3 ea0c3adb-0bdd-46de-b8af-cc34683a7150 7387ffddc74528b245aecea46dfa4100 {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.RNA-Seq.S16_L006_R1.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R1_001.fastq.gz 3527851467 FASTQ S16_L006_R1 submitted_unaligned CPTAC3 0138a8d4-1eda-45fc-9516-eee215e5cebc 678860e5bf2251e7dd80f8285266feb3 {"aliquot_tag": "ALQ_d702057a", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.RNA-Seq.S16_L006_R2.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R2_001.fastq.gz 3424569482 FASTQ S16_L006_R2 submitted_unaligned CPTAC3 d6018ec3-38ff-4147-9cac-d0a9fea156af 4be6aa54f97646399eaf46d8934344c5 {"aliquot_tag": "ALQ_d702057a", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.RNA-Seq.S5_L002_R1.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 3913365668 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 352bd1f3-e4b4-4883-8b16-2bca8faa3175 2ed8f09a9f96c899f50f9a71ac572b7e {"aliquot_tag": "ALQ_ea622cca", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.RNA-Seq.S5_L002_R2.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 4071605231 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 c617733c-0b14-473b-a21d-fd0849bac86e 5203e7fc8ce62bc54478b6edb4ca477b {"aliquot_tag": "ALQ_ea622cca", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.RNA-Seq.transcriptome.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.transcriptome.gdc_realn.bam 9340158325 BAM transcriptome harmonized CPTAC3 50984d04-0e92-4100-9bac-ba5a765e0869 0ce81d51a9a5715c0063737f9531e6aa {"aliquot_tag": "ALQ_ea622cca", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.RNA-Seq.transcriptome.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.transcriptome.gdc_realn.bam 8374258014 BAM transcriptome harmonized CPTAC3 5db23ec9-f508-4820-982d-a2e8be25acf3 6c33f92a46732421f9f3422111a5e9f4 {"aliquot_tag": "ALQ_d702057a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.WGS.A C3L-01313 CCRCC WGS tissue_normal CPT0086830009 CPT0086830009.WholeGenome.RP-1303.bam 59317828295 BAM submitted_aligned CPTAC3 93f2881a-6349-43e7-b3c2-1d931dec29ca 08d919ad65982f8c564d0b9ddb072ddf {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.WGS.A.hg38 C3L-01313 CCRCC WGS tissue_normal CPT0086830009 2b45a2a4-b594-48fa-9a93-5e8951b43fef_wgs_gdc_realn.bam 86280542011 BAM harmonized CPTAC3 17b79fe5-a496-4fe8-bd42-d376e45645c4 971a7dbe9d9a14ecb92bc5beb6f9e1b8 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.WGS.N C3L-01313 CCRCC WGS blood_normal CPT0087430002 CPT0087430002.WholeGenome.RP-1303.bam 81713181657 BAM submitted_aligned CPTAC3 5c680bf0-9de3-4084-97f5-6c3cab7d292f 4c2a62b4517ece3dbf7f7279bc817b31 {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01313.WGS.N.hg38 C3L-01313 CCRCC WGS blood_normal CPT0087430002 7c8a6a6d-4e27-40d7-af65-aed871abbd2f_gdc_realn.bam 120624062236 BAM harmonized CPTAC3 5bef9e8b-801e-41ac-88f3-affa923acc17 5f567cd6a683da2dd72ee94361948131 {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01313.WGS.T C3L-01313 CCRCC WGS tumor CPT0086820009 CPT0086820009.WholeGenome.RP-1303.bam 76592271706 BAM submitted_aligned CPTAC3 a6d7168d-70e4-415f-a690-cf925d71a7ff cea37781eadee70103f25cbe2d346d2e {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.WGS.T.hg38 C3L-01313 CCRCC WGS tumor CPT0086820009 3f1962c7-2a1e-4ac9-b8e0-3e0ab8150728_gdc_realn.bam 114858412722 BAM harmonized CPTAC3 3c75357f-8172-4bd1-b5af-3028766f001b 9cbe72ccaec8d65583a7883d836a6860 {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.WXS.A C3L-01313 CCRCC WXS tissue_normal CPT0086830009 CPT0086830009.WholeExome.RP-1303.bam 34509592760 BAM submitted_aligned CPTAC3 9b13a1f0-bae0-4397-8add-fb4f0af433aa aed88f52dcfe1122e1c9d9428c7ede9b {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.WXS.A.hg38 C3L-01313 CCRCC WXS tissue_normal CPT0086830009 2b45a2a4-b594-48fa-9a93-5e8951b43fef_wxs_gdc_realn.bam 46451072602 BAM harmonized CPTAC3 e48fa87a-11bb-464a-a2e6-21b8f2380a2c 9d1dceb945111bc08cd3e23a22fe79e0 {"aliquot_tag": "ALQ_7add315b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01313.WXS.N C3L-01313 CCRCC WXS blood_normal CPT0087430002 CPT0087430002.WholeExome.RP-1303.bam 31467584141 BAM submitted_aligned CPTAC3 91f3c0c1-33da-401e-aa32-e34f6f665f01 75b536233de608155da19099d3535877 {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01313.WXS.N.hg38 C3L-01313 CCRCC WXS blood_normal CPT0087430002 7c8a6a6d-4e27-40d7-af65-aed871abbd2f_gdc_realn.bam 42662768467 BAM harmonized CPTAC3 915b1b1c-c564-4511-a687-ae0855339a53 1a950ab0ffa33a1c5d0206f2db6c26fd {"aliquot_tag": "ALQ_3cba231c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01313.WXS.T C3L-01313 CCRCC WXS tumor CPT0086820009 CPT0086820009.WholeExome.RP-1303.bam 27615905367 BAM submitted_aligned CPTAC3 09d4fa8f-eba7-4cc2-941c-23874b0669f5 d89e827ddeb303571edd0623325c72bf {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01313.WXS.T.hg38 C3L-01313 CCRCC WXS tumor CPT0086820009 3f1962c7-2a1e-4ac9-b8e0-3e0ab8150728_gdc_realn.bam 38219874416 BAM harmonized CPTAC3 fe34a8b3-5910-4280-8b98-49283ddeac24 60209796a062ab1a7444428016daf3fa {"aliquot_tag": "ALQ_47bd18eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.MethArray.Green.T C3L-01327 GBM Methylation_Array tumor CPT0064890009 202176290116_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 31e535e0-b739-4d85-9324-43c5a29ce04e 5c0355455b4dd6970a7fa13f8edfb17a {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.MethArray.Red.T C3L-01327 GBM Methylation_Array tumor CPT0064890009 202176290116_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 225be72f-872f-4b41-8d96-87fac9886439 72d1e8f4ad50b868d512bbe4e0c9523e {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.miRNA-Seq.S26_L002_R1.T C3L-01327 GBM miRNA-Seq tumor CPT0064890006 190813_UNC32-K00270_0196_AH5MCWBBXY_TACAGC_S26_L002_R1_001.unaln.bam 361198347 BAM S26_L002_R1 submitted_unaligned CPTAC3 5f062fad-d76d-468e-83a2-8d2172dd47c1 dad64fab9fe516c1abfd5739fbb3e0a4 {"aliquot_tag": "ALQ_22c73770", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.miRNA-Seq.T.hg38 C3L-01327 GBM miRNA-Seq tumor CPT0064890006 914c4fc7-6eea-4447-bf89-935a8413127f_mirnaseq_gdc_realn.bam 411930135 BAM harmonized CPTAC3 4557d3fc-d131-4113-95cb-b05b678df87c d02957605e56158d865b69df51bcc7ac {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.RNA-Seq.chimeric.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.chimeric.gdc_realn.bam 55092457 BAM chimeric harmonized CPTAC3 3e76f536-6c0e-424d-a2a8-db17f680ee49 0267da1562730ba06a41cb6221efaf0e {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.RNA-Seq.genomic.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.genomic.gdc_realn.bam 6675174478 BAM genomic harmonized CPTAC3 f733a605-f6bb-46c1-b8c6-8ede10e46469 5437ee79dce72a4389a87555945a5857 {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.RNA-Seq.S16_L004_R1.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3051942729 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 2a69a48b-eeeb-473c-9ff9-9ea09cb43090 0226c8a27d40d95208f055973a0f713d {"aliquot_tag": "ALQ_22c73770", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.RNA-Seq.S16_L004_R2.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3385695454 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 00d4635f-27ee-4351-a39c-230ebb366fd7 c1a9850e5714332b6cc981d4bb245585 {"aliquot_tag": "ALQ_22c73770", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.RNA-Seq.transcriptome.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.transcriptome.gdc_realn.bam 7317150938 BAM transcriptome harmonized CPTAC3 82f3738c-617d-4c62-990c-c9743bcc5050 5c6f769caf7578b29ac2d2f956ef4227 {"aliquot_tag": "ALQ_22c73770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.WGS.N C3L-01327 GBM WGS blood_normal CPT0066690002 CPT0066690002.WholeGenome.RP-1303.bam 82382827555 BAM submitted_aligned CPTAC3 d8c9db7c-5839-4683-9f24-281ca8833824 c33bc934a9e94ac32c05aac02e667c40 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01327.WGS.N.hg38 C3L-01327 GBM WGS blood_normal CPT0066690002 d0dc9d75-a40c-4673-af55-912e85b82593_gdc_realn.bam 125494357631 BAM harmonized CPTAC3 dbe76591-1276-49d4-a0d5-22878b05c8f9 0e329b7f4aecdb45661fa05760ce5467 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01327.WGS.T C3L-01327 GBM WGS tumor CPT0064890009 CPT0064890009.WholeGenome.RP-1303.bam 65492288640 BAM submitted_aligned CPTAC3 ae894eaf-82cb-4156-9586-f3f6c45b7963 8c94526fb092064aa38ee0b18711f66c {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.WGS.T.hg38 C3L-01327 GBM WGS tumor CPT0064890009 3b2c4984-e1ca-4748-bb09-e62be4918bae_gdc_realn.bam 98566544991 BAM harmonized CPTAC3 f573ff27-2c76-4d3a-92fa-050676487f52 964990d241cd579db228249e4af16ee0 {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.WXS.N C3L-01327 GBM WXS blood_normal CPT0066690002 CPT0066690002.WholeExome.RP-1303.bam 27511617665 BAM submitted_aligned CPTAC3 8343af23-a3e6-4286-8508-2520ed91a050 4a157725929bed2c666edd6957d63697 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01327.WXS.N.hg38 C3L-01327 GBM WXS blood_normal CPT0066690002 d0dc9d75-a40c-4673-af55-912e85b82593_gdc_realn.bam 37433145662 BAM harmonized CPTAC3 601034a1-3239-4052-8b81-1acd2c84904f 725ab04b59d19abaceabb285ef855970 {"aliquot_tag": "ALQ_883f8330", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01327.WXS.T C3L-01327 GBM WXS tumor CPT0064890009 CPT0064890009.WholeExome.RP-1303.bam 30037298440 BAM submitted_aligned CPTAC3 e3a8cd87-24fe-454c-ad24-03efd48adf1a ad5b05e996bc969da41ef10d19b15a81 {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01327.WXS.T.hg38 C3L-01327 GBM WXS tumor CPT0064890009 3b2c4984-e1ca-4748-bb09-e62be4918bae_gdc_realn.bam 41361369093 BAM harmonized CPTAC3 d97f54cc-c55d-4ec5-839b-c331b0f96e5a eff844ef99b8046c30e4d972486f4d61 {"aliquot_tag": "ALQ_b2782ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.MethArray.Green.A C3L-01328 PDA Methylation_Array tissue_normal CPT0083290006 203561450106_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4819a418-2991-4bc9-b5dd-958b15373632 501afcbb2b89e94a6367ad80001b47ee {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.MethArray.Green.T C3L-01328 PDA Methylation_Array tumor CPT0083270006 202176290095_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4734d09b-b696-4180-adc1-f7a2d944551f 47855d0f70bac6fda6bb3bbfe6a747a5 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.MethArray.Red.A C3L-01328 PDA Methylation_Array tissue_normal CPT0083290006 203561450106_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 562266a1-64bf-4071-be3e-161bf6d497e2 6954905ac80a95ef592868c9e143a407 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.MethArray.Red.T C3L-01328 PDA Methylation_Array tumor CPT0083270006 202176290095_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 79c25674-f522-4e5b-8230-38aa6747463c a15abf2a2987a462a2f1a8b8910c6b88 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.miRNA-Seq.A.hg38 C3L-01328 PDA miRNA-Seq tissue_normal CPT0083290009 bb421dec-3cf1-49b2-8ac4-478dd4812a1a_mirnaseq_gdc_realn.bam 305343322 BAM harmonized CPTAC3 4611d35f-f9ff-4025-9c32-cc4ae1596b21 8124d9a5b7fbf9c27f3fa03ff1a83e38 {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.miRNA-Seq.S26_L002_R1.A C3L-01328 PDA miRNA-Seq tissue_normal CPT0083290009 181119_UNC31-K00269_0165_AH27WCBBXY_CGATGT_S26_L002_R1_001.unaln.bam 276927989 BAM S26_L002_R1 submitted_unaligned CPTAC3 23f6bd8f-e5ba-41f6-832d-4c0446f279c3 b70b591c06112a04069f8b1b6332e111 {"aliquot_tag": "ALQ_c3ce253b", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.miRNA-Seq.S2_L006_R1.T C3L-01328 PDA miRNA-Seq tumor CPT0083270009 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L006_R1_001.unaln.bam 204572258 BAM S2_L006_R1 submitted_unaligned CPTAC3 464ff502-358d-43ec-99d7-a53966b0bf23 1fa718e80a799bc5918743b00f03d6d4 {"aliquot_tag": "ALQ_7cfe9b5a", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.miRNA-Seq.T.hg38 C3L-01328 PDA miRNA-Seq tumor CPT0083270009 0dd6d435-ec09-4873-890a-8c250eee5961_mirnaseq_gdc_realn.bam 224339939 BAM harmonized CPTAC3 776ade15-0a7d-47ad-a266-abe67d006f65 90e6d5df791a5629db4edd551c15dba7 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.RNA-Seq.chimeric.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.chimeric.gdc_realn.bam 45003326 BAM chimeric harmonized CPTAC3 45b4fd42-dc20-4e2b-b452-cc7fe8f4fcda deeddc0692c04349475fde14b8e97f48 {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.RNA-Seq.chimeric.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.chimeric.gdc_realn.bam 48393175 BAM chimeric harmonized CPTAC3 fef0110f-d6af-482d-8640-ddba28f504fb 165c14d782fa82baf49e8fc304c12bd4 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.genomic.gdc_realn.bam 11355970334 BAM genomic harmonized CPTAC3 015d71b1-0bd1-4a19-a9e6-715d3af57314 72b9a5a1fed8b9a3172f9e9203172dde {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.genomic.gdc_realn.bam 9452358062 BAM genomic harmonized CPTAC3 56ea54d2-2bf3-44ed-8650-8c269098d1e4 72ed694485df0f8a461397ee529b6244 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.RNA-Seq.S11_L003_R1.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4773594378 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 140c920a-1034-4bd0-b3ae-cda59eaf729d 3d5e5e2368c9c968e6e7cbec398b1757 {"aliquot_tag": "ALQ_c3ce253b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.RNA-Seq.S11_L003_R2.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5326317172 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 91373e81-5d8e-4e0e-b776-da23ccc8165e 22ffceec080d1fc3630ad454238b14cc {"aliquot_tag": "ALQ_c3ce253b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.RNA-Seq.S8_L002_R1.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3929468307 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 50af033e-efd9-4223-9105-cec0998a7665 d489146b34a7bb64803dd33af8c197b4 {"aliquot_tag": "ALQ_7cfe9b5a", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.RNA-Seq.S8_L002_R2.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4292836821 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 f79a8648-7ffd-4985-9510-96f6275e7ba8 0006119e9f3531c97f6c70f3ba2fe190 {"aliquot_tag": "ALQ_7cfe9b5a", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.RNA-Seq.transcriptome.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.transcriptome.gdc_realn.bam 14212831115 BAM transcriptome harmonized CPTAC3 3f040ad1-8c12-488c-8822-b3f15b60624b c8d15d2376b86ff3d691a8e15973152d {"aliquot_tag": "ALQ_c3ce253b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.RNA-Seq.transcriptome.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.transcriptome.gdc_realn.bam 11075845406 BAM transcriptome harmonized CPTAC3 f9cacae2-3526-4222-a87b-55ffceb8a6f0 e714a7323c657787bb565860762a1af3 {"aliquot_tag": "ALQ_7cfe9b5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.Targeted.T C3L-01328 PDA Targeted_Sequencing tumor CPT0083270006_1 CPT0083270006_1.CustomSelection.RP-1303.PDO-18786.bam 5323434123 BAM submitted_aligned CPTAC3 5bfb3cd8-1ec0-4ae2-849d-4c936eeaa99e 486676aef465fcff63495c3ea8d4d442 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.Targeted.T.hg38 C3L-01328 PDA Targeted_Sequencing tumor CPT0083270006_1 a1f1790d-0bc6-422f-bbec-1da8e59c9ecf_targetedsequencing_gdc_realn.bam 7473606650 BAM harmonized CPTAC3 2080cc6a-6458-4aa8-b09c-a7f1bd01735d 015ea5eceb0597733a108c42c55d2051 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.WGS.A C3L-01328 PDA WGS tissue_normal CPT0083290006 CPT0083290006.WholeGenome.RP-1303.bam 61081151406 BAM submitted_aligned CPTAC3 ac226008-2859-418f-a203-483dbf17fc3a e6f124e91249b209d510ccb9b66ec124 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.WGS.A.hg38 C3L-01328 PDA WGS tissue_normal CPT0083290006 6a5398e0-434f-4dea-8c9e-75cd3d1069a8_wgs_gdc_realn.bam 88259026630 BAM harmonized CPTAC3 80c596a7-1280-418b-962e-dc2db04052b8 b483ad2b3026f25fca6cf40c0fce7155 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.WGS.N C3L-01328 PDA WGS blood_normal CPT0081770002 CPT0081770002.WholeGenome.RP-1303.bam 79408684555 BAM submitted_aligned CPTAC3 f36cdc19-cffd-4fd2-97b5-91965c5f702f 7880e18388872305f19dc99d25f5d11a {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01328.WGS.N.hg38 C3L-01328 PDA WGS blood_normal CPT0081770002 f4f770b4-5f7c-42d2-a70b-ff0c35d237c8_gdc_realn.bam 118470215977 BAM harmonized CPTAC3 0e221953-4887-4bfb-88c0-68bda3757521 5b2e28d193d40ce53f6041e74a1675a1 {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01328.WGS.T C3L-01328 PDA WGS tumor CPT0083270006 CPT0083270006.WholeGenome.RP-1303.bam 75862906771 BAM submitted_aligned CPTAC3 d299db9c-814c-4342-b75a-f14472fd8f86 e5914b9743ff49ba31cb603ce10184c4 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.WGS.T.hg38 C3L-01328 PDA WGS tumor CPT0083270006 47bd35c7-9eca-4f60-b46b-0edc44d0ff36_gdc_realn.bam 112948045987 BAM harmonized CPTAC3 3cc251c7-c906-413a-8970-ea5cb3ffa7a3 e01c5e8284bd133b041477bded1ddfa3 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.WXS.A C3L-01328 PDA WXS tissue_normal CPT0083290006 CPT0083290006.WholeExome.RP-1303.bam 30304163670 BAM submitted_aligned CPTAC3 0274efe6-c32a-4920-a787-d2da72067492 53d281253982bdaf82247c1fd66991b5 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.WXS.A.hg38 C3L-01328 PDA WXS tissue_normal CPT0083290006 6a5398e0-434f-4dea-8c9e-75cd3d1069a8_wxs_gdc_realn.bam 41208665135 BAM harmonized CPTAC3 38e2caa6-68aa-4336-842d-53d785bff024 0a11e92b78da1c1be5183629a14eb418 {"aliquot_tag": "ALQ_537138aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01328.WXS.N C3L-01328 PDA WXS blood_normal CPT0081770002 CPT0081770002.WholeExome.RP-1303.bam 48496685019 BAM submitted_aligned CPTAC3 84d3a925-65d0-4d90-8166-f1f488174b90 ac92f5775131190acf6ac4ba7b252e21 {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01328.WXS.N.hg38 C3L-01328 PDA WXS blood_normal CPT0081770002 f4f770b4-5f7c-42d2-a70b-ff0c35d237c8_gdc_realn.bam 65877688796 BAM harmonized CPTAC3 848fb576-3673-4f63-b817-ec7185ceeab0 8ab463df8df33a12c9aa96bb4f50c24a {"aliquot_tag": "ALQ_2c7ec248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01328.WXS.T C3L-01328 PDA WXS tumor CPT0083270006_1 CPT0083270006_1.WholeExome.RP-1303.bam 71250892669 BAM submitted_aligned CPTAC3 095f2dfb-9a49-458f-ac99-4613112062b6 151dfd4a2b7e8b9218206f20a46ced00 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.WXS.T C3L-01328 PDA WXS tumor CPT0083270006 CPT0083270006.WholeExome.RP-1303.bam 38332381975 BAM submitted_aligned CPTAC3 7ba64b27-cf63-499f-ab23-af86f4531be0 11dd16242dc7fd8396d76f43b5d58411 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.WXS.T.hg38 C3L-01328 PDA WXS tumor CPT0083270006_1 a1f1790d-0bc6-422f-bbec-1da8e59c9ecf_wxs_gdc_realn.bam 97390411350 BAM harmonized CPTAC3 5024d5b1-2feb-4db3-9d62-a83177088a02 3459aac65bfc7354c4dc06869a6c7387 {"aliquot_tag": "ALQ_1f1978f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01328.WXS.T.hg38 C3L-01328 PDA WXS tumor CPT0083270006 47bd35c7-9eca-4f60-b46b-0edc44d0ff36_gdc_realn.bam 52406988643 BAM harmonized CPTAC3 7d6d2d3b-98b9-41e4-8f4c-014245b7f8c7 06ec42946a687667c79db3d5626545b3 {"aliquot_tag": "ALQ_ec4186cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.MethArray.Green.A C3L-01330 LUAD Methylation_Array tissue_normal CPT0083420009 203027390105_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 eb12575f-a8a8-4c8c-a40d-f2e7331419f3 7405795f1cc1a6222bba3884c2d025bf {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.MethArray.Green.T C3L-01330 LUAD Methylation_Array tumor CPT0083390007 202184900105_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0e25f43d-c19f-418d-bba3-f7bafbc9680f 99e03f41182df75ae84ce42dc5200fbd {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.MethArray.Red.A C3L-01330 LUAD Methylation_Array tissue_normal CPT0083420009 203027390105_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 951f8d11-0a97-4f3d-9d4a-8f3a501f5eb3 e64685dd0cc1b7de36a4d676878716b3 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.MethArray.Red.T C3L-01330 LUAD Methylation_Array tumor CPT0083390007 202184900105_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 5c88b9de-bff8-4d0f-b025-bebcfece98e0 e57eab8000846dc9ca210e90d474cfb5 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.miRNA-Seq.A.hg38 C3L-01330 LUAD miRNA-Seq tissue_normal CPT0083420006 5e709685-9e7b-4202-930f-8c36041fe599_mirnaseq_gdc_realn.bam 326362591 BAM harmonized CPTAC3 8269dd40-a887-4c38-9c35-b8ddf051bd09 2ae9adb58900594938bef138f7796b17 {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.miRNA-Seq.S35_L004_R1.T C3L-01330 LUAD miRNA-Seq tumor CPT0083390010 181113_UNC31-K00269_0164_AH23NNBBXY_GGCTAC_S35_L004_R1_001.unaln.bam 246971522 BAM S35_L004_R1 submitted_unaligned CPTAC3 e74c51bc-ddc7-4240-9f75-bc35bbdac630 400d4477c23e690cc4a9dc1140cf4a62 {"aliquot_tag": "ALQ_68557f7b", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.miRNA-Seq.S7_L007_R1.A C3L-01330 LUAD miRNA-Seq tissue_normal CPT0083420006 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L007_R1_001.unaln.bam 297353857 BAM S7_L007_R1 submitted_unaligned CPTAC3 fac3f593-46b2-48c3-b8cf-f5ed21242709 7fe112286eeaa5796392b8caaa80e212 {"aliquot_tag": "ALQ_f2f8eaa6", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.miRNA-Seq.T.hg38 C3L-01330 LUAD miRNA-Seq tumor CPT0083390010 ae2442d3-78c2-430c-9169-37e1298be8c1_mirnaseq_gdc_realn.bam 270474251 BAM harmonized CPTAC3 57a2d059-d437-40f0-8053-0e1a5fbb7c2d 9088ab596785ef23e2cf7153ceac3580 {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.RNA-Seq.chimeric.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.chimeric.gdc_realn.bam 98096619 BAM chimeric harmonized CPTAC3 0ef08e7d-2510-44e9-bdc9-97d22649a6ef 0e7cf791608b73ac8800da2619cbe472 {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.RNA-Seq.chimeric.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.chimeric.gdc_realn.bam 51268071 BAM chimeric harmonized CPTAC3 c3e97123-df6f-46f0-a19e-602e821942e0 193aabb71744adfadb82bf5d6ec2e8b5 {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.RNA-Seq.genomic.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.genomic.gdc_realn.bam 8097589480 BAM genomic harmonized CPTAC3 167e253d-3971-4b0b-8280-9750d8429ca0 362fd09229cd64a815e50b38f64cf44b {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.RNA-Seq.genomic.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.genomic.gdc_realn.bam 7597482780 BAM genomic harmonized CPTAC3 6a70e252-3c2e-4a86-af4a-24347b7d96ff dba4970b248a9ffa0746ec35fbbe4fca {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.RNA-Seq.S19_L005_R1.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3906878362 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 2253d6b5-fa0e-423d-91f6-91a89072f35e 5c9527c46df65690ba274dff6d2d04cd {"aliquot_tag": "ALQ_f2f8eaa6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.RNA-Seq.S19_L005_R2.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R2_001.fastq.gz 4345483539 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 b104ca9a-741d-4e71-b3bc-9a26a9cd6db1 7a4df832ce0d016c9fad40f19d41f4a8 {"aliquot_tag": "ALQ_f2f8eaa6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.RNA-Seq.S7_L002_R1.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3486312091 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 d6b0d5a1-ca0a-40f6-8339-8652aab7a234 9d74e88f66c1945a3598a0d599e0f8a2 {"aliquot_tag": "ALQ_68557f7b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.RNA-Seq.S7_L002_R2.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 3818273723 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 15dc97a0-f911-4f6d-ad2d-97be1e037095 7b23e63fc3b0ec35faffe123d9dd189a {"aliquot_tag": "ALQ_68557f7b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.RNA-Seq.transcriptome.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.transcriptome.gdc_realn.bam 9274754717 BAM transcriptome harmonized CPTAC3 9491022f-4097-478f-b029-0c26078e61b9 351d3380f1e72ef7d73a3ee1c11e5975 {"aliquot_tag": "ALQ_f2f8eaa6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.RNA-Seq.transcriptome.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.transcriptome.gdc_realn.bam 8622090820 BAM transcriptome harmonized CPTAC3 6426e075-6df1-473d-9478-dba0b016c769 3f41d46e5126bdbd8be615f428d5ad95 {"aliquot_tag": "ALQ_68557f7b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.WGS.A C3L-01330 LUAD WGS tissue_normal CPT0083420009 CPT0083420009.WholeGenome.RP-1303.bam 53911713193 BAM submitted_aligned CPTAC3 a3c71cce-a36b-4a68-8f44-d6c96d1a7e6d 76a5cc7bcabf49b4b50d5ac768f066d8 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.WGS.A.hg38 C3L-01330 LUAD WGS tissue_normal CPT0083420009 6bab03bf-7fa4-4ae3-8554-97dd689f7270_wgs_gdc_realn.bam 80989491801 BAM harmonized CPTAC3 8e2830fc-e09d-4efb-a6fa-c017609373a7 0d1b0f9b7ca1c49ab249031b7a51f484 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.WGS.N C3L-01330 LUAD WGS blood_normal CPT0081800001 CPT0081800001.WholeGenome.RP-1303.bam 73117793685 BAM submitted_aligned CPTAC3 91381ec2-87b3-4c81-8392-8f83ed6fff9f 8a9a24d00d13f027bb5214272b98fb68 {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01330.WGS.N.hg38 C3L-01330 LUAD WGS blood_normal CPT0081800001 845737d4-d42e-46e9-bf0d-6679c70156c2_gdc_realn.bam 109286955067 BAM harmonized CPTAC3 2f32ee67-a737-4c5a-b786-9c32514f0ad4 b586e79cadf1b55629af6bd839035c4c {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01330.WGS.T C3L-01330 LUAD WGS tumor CPT0083390007 CPT0083390007.WholeGenome.RP-1303.bam 85247928288 BAM submitted_aligned CPTAC3 5ce55ca6-525e-4ca5-84c4-a512b7a0f9db 362ad4bd9714b85b4f1bad82672ddf69 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.WGS.T.hg38 C3L-01330 LUAD WGS tumor CPT0083390007 593a72ce-4932-42bd-b701-d62a7220ee4f_gdc_realn.bam 128008303471 BAM harmonized CPTAC3 516252fe-c547-437e-8df9-b8aca24870ea 4d1f9684f6dd6a2260fe19d7a81dda11 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.WXS.A C3L-01330 LUAD WXS tissue_normal CPT0083420009 CPT0083420009.WholeExome.RP-1303.bam 30717519389 BAM submitted_aligned CPTAC3 ddd75610-48a0-48e9-ae1f-f07cfcb52628 5446fe937b35d67566421ad58bfdd339 {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.WXS.A.hg38 C3L-01330 LUAD WXS tissue_normal CPT0083420009 6bab03bf-7fa4-4ae3-8554-97dd689f7270_wxs_gdc_realn.bam 42008059950 BAM harmonized CPTAC3 91d991b0-7b23-47d3-b331-fff02de35f91 13408aa85a1fa9966b87dccfc594d45a {"aliquot_tag": "ALQ_6247f737", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01330.WXS.N C3L-01330 LUAD WXS blood_normal CPT0081800001 CPT0081800001.WholeExome.RP-1303.bam 24224823633 BAM submitted_aligned CPTAC3 cd0a3946-ef66-4f19-91e2-8a89868d229d 1e3dfd8ebfc311d41fac78f0b3c7e967 {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01330.WXS.N.hg38 C3L-01330 LUAD WXS blood_normal CPT0081800001 845737d4-d42e-46e9-bf0d-6679c70156c2_gdc_realn.bam 32739288707 BAM harmonized CPTAC3 b2a0c4ca-7c82-4d36-bc9a-7dd28ec4f7b9 8cc68d246dd8d857c4277358a75e1d65 {"aliquot_tag": "ALQ_f601fd37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01330.WXS.T C3L-01330 LUAD WXS tumor CPT0083390007 CPT0083390007.WholeExome.RP-1303.bam 29053272817 BAM submitted_aligned CPTAC3 ebc57c90-a04c-4d03-8d53-310074283237 12723505ade9526183c0ab73f0bb8027 {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01330.WXS.T.hg38 C3L-01330 LUAD WXS tumor CPT0083390007 593a72ce-4932-42bd-b701-d62a7220ee4f_gdc_realn.bam 39865882180 BAM harmonized CPTAC3 88b8007a-10b1-4e99-954b-2e99921214bb c3a30c50b26d0c67f734e457bfce02ea {"aliquot_tag": "ALQ_ef2adb99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.MethArray.Green.T C3L-01352 CCRCC Methylation_Array tumor CPT0071150010 202184990069_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 14108a35-d9dd-4954-af0a-fc3f842a1f32 8dae5d0689dbbe0ad65dcc25a840d896 {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.MethArray.Red.T C3L-01352 CCRCC Methylation_Array tumor CPT0071150010 202184990069_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6bc71a50-de58-411c-a3ff-a5b181b1d679 23cfb41f4bfcc7959ba85571c8be7304 {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.miRNA-Seq.S33_L007_R1.T C3L-01352 CCRCC miRNA-Seq tumor CPT0071150007 181012_UNC32-K00270_0124_AH223CBBXY_CTTGTA_S33_L007_R1_001.unaln.bam 271742881 BAM S33_L007_R1 submitted_unaligned CPTAC3 376cd891-acfe-4464-9d73-89f8489b29d9 41e3e62040286f1bcd363ace38fd6a85 {"aliquot_tag": "ALQ_29ad9416", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.miRNA-Seq.T.hg38 C3L-01352 CCRCC miRNA-Seq tumor CPT0071150007 35f853c0-d953-4408-814c-72c5ef86ff9b_mirnaseq_gdc_realn.bam 300657639 BAM harmonized CPTAC3 9208dc62-31ea-4b18-95ba-74cd33acd407 87fe5d1140bd54de7fbefbbe5e3f7ddc {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.RNA-Seq.chimeric.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.chimeric.gdc_realn.bam 94465062 BAM chimeric harmonized CPTAC3 948b8676-dc41-42b0-9f89-a36897d45ee8 a25e69f8979ce44b200c4dd79bd18f0c {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.RNA-Seq.genomic.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.genomic.gdc_realn.bam 7861795197 BAM genomic harmonized CPTAC3 e031a800-6f71-460a-afa1-860ddc304a3b d6373c4e1c58d9bb3daccd97a6cdab3e {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.RNA-Seq.S21_L007_R1.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R1_001.fastq.gz 4028105922 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 22ee7030-3274-461a-941b-04ab673308f8 d882364856508783318d3b707e693b30 {"aliquot_tag": "ALQ_29ad9416", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.RNA-Seq.S21_L007_R2.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R2_001.fastq.gz 4308194705 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 8d9def8e-edcc-46fe-ad1a-246d5e8d6e82 8ea359967697730c23a9d1299897159a {"aliquot_tag": "ALQ_29ad9416", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.RNA-Seq.transcriptome.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.transcriptome.gdc_realn.bam 11753340601 BAM transcriptome harmonized CPTAC3 9b3da46e-7754-4e3a-9d05-64739bc6b29c 8e6fa6bd261427e7def78007612fde4f {"aliquot_tag": "ALQ_29ad9416", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.WGS.N C3L-01352 CCRCC WGS blood_normal CPT0071980002 CPT0071980002.WholeGenome.RP-1303.bam 61487552634 BAM submitted_aligned CPTAC3 8b3feb25-5077-4529-81ef-f1ea352c4c1d 5b8937b72c49da7a07a4a6ec5546844a {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01352.WGS.N.hg38 C3L-01352 CCRCC WGS blood_normal CPT0071980002 3268319a-ab4b-47bb-ad7f-bb2aa22d92c5_gdc_realn.bam 93021309930 BAM harmonized CPTAC3 e1794f91-7fab-4a26-a71f-500a69109dd8 74eb8801cacac0117494bd479096ea8a {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01352.WGS.T C3L-01352 CCRCC WGS tumor CPT0071150010 CPT0071150010.WholeGenome.RP-1303.bam 69607051479 BAM submitted_aligned CPTAC3 1eff860e-449b-4f19-987c-8736e3ac0050 ac2c7c390b443bb31378cc1991e8086d {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.WGS.T.hg38 C3L-01352 CCRCC WGS tumor CPT0071150010 01390bfe-15c8-4608-9785-7f9d51990f6c_gdc_realn.bam 105489621672 BAM harmonized CPTAC3 dcf55fde-e9f3-4ccd-9971-e97570a1d43e 5c540521f638ecbe5585df63bf2edcfd {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.WXS.N C3L-01352 CCRCC WXS blood_normal CPT0071980002 CPT0071980002.WholeExome.RP-1303.bam 32350824470 BAM submitted_aligned CPTAC3 4484d0df-7717-48a3-9cf3-3956651bec7a 781546a2565e3da356d6334f5efc482d {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01352.WXS.N.hg38 C3L-01352 CCRCC WXS blood_normal CPT0071980002 3268319a-ab4b-47bb-ad7f-bb2aa22d92c5_gdc_realn.bam 43822799988 BAM harmonized CPTAC3 cb9822ae-c9a9-46ee-aef6-30addbcc01fa 91eff4310e8dd4bba638558f3cacf964 {"aliquot_tag": "ALQ_4d042645", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01352.WXS.T C3L-01352 CCRCC WXS tumor CPT0071150010 CPT0071150010.WholeExome.RP-1303.bam 39999661126 BAM submitted_aligned CPTAC3 2bde7340-b645-4af2-9ce4-838144ba8e67 3ddd593b7f3aed6b2c5e80314af8c6ac {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01352.WXS.T.hg38 C3L-01352 CCRCC WXS tumor CPT0071150010 01390bfe-15c8-4608-9785-7f9d51990f6c_gdc_realn.bam 56134206583 BAM harmonized CPTAC3 d4b55f23-23ae-4a7f-9fb3-50607c36436f 679466854def2259e0f22579110abe9d {"aliquot_tag": "ALQ_aed230f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01355.MethArray.Green.T C3L-01355 UCEC Methylation_Array tumor CPT0083580006 202184900110_R08C01_Grn.idat 13676256 IDAT Green NA CPTAC3 e26b86eb-d469-463d-aa18-83153d02cef8 2b15ca8c51a08af40c233f832e3a90d1 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.MethArray.Red.T C3L-01355 UCEC Methylation_Array tumor CPT0083580006 202184900110_R08C01_Red.idat 13676256 IDAT Red NA CPTAC3 4442ddbb-827e-40e3-ae49-4c482a5b8469 b51ab62e6d3cad26d1e007f1a152e319 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.miRNA-Seq.S11_L008_R1.T C3L-01355 UCEC miRNA-Seq tumor CPT0083580013 181108_UNC31-K00269_0163_BH23TVBBXY_GGCTAC_S11_L008_R1_001.unaln.bam 178699422 BAM S11_L008_R1 submitted_unaligned CPTAC3 c8ee366b-11de-42f5-904b-b9bbb94a9aaf ddb3d51a56cf18ddb3805d7f3b8dde25 {"aliquot_tag": "ALQ_1a65e46c", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.miRNA-Seq.T.hg38 C3L-01355 UCEC miRNA-Seq tumor CPT0083580013 7085c267-55fe-4e9f-8a05-b54de98594e6_mirnaseq_gdc_realn.bam 195925602 BAM harmonized CPTAC3 83e075a3-fc5f-4bf1-a719-74edeea36539 ef85b229d81fe1aeb39371d4f4cbd8f0 {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.chimeric.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.chimeric.gdc_realn.bam 36090080 BAM chimeric harmonized CPTAC3 25b0264d-607a-4bd9-91b0-506015b2886d 74bae35b808b30d5fb44c026f7fc3369 {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.chimeric.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.chimeric.gdc_realn.bam 81495737 BAM chimeric harmonized CPTAC3 61505e17-4e3a-460b-9092-4c597ad72e31 192eccf81564230e55152d4a1e85c124 {"aliquot_tag": "ALQ_ae142bae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.genomic.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.genomic.gdc_realn.bam 7742458443 BAM genomic harmonized CPTAC3 5d1447a6-ebd3-4546-a05c-18e751ba6d05 e09ddfb88872f3fc0663f1631286507d {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.genomic.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.genomic.gdc_realn.bam 4437674831 BAM genomic harmonized CPTAC3 fd5f4068-db5e-4a8b-aef5-1a9c3637e4be eb274a60c0f745d50b9d9ebbfcb8061e {"aliquot_tag": "ALQ_ae142bae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.S17_L007_R1.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R1_001.fastq.gz 4204285748 FASTQ S17_L007_R1 submitted_unaligned CPTAC3 864ac672-b31c-41c7-a472-f6ca7977e107 923a7e9f350cc83d472ba8accf9ae0eb {"aliquot_tag": "ALQ_1a65e46c", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.S17_L007_R2.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R2_001.fastq.gz 4378833707 FASTQ S17_L007_R2 submitted_unaligned CPTAC3 aa9b3c1e-498b-4e3e-8bb3-1242ba69dac3 1e853117bc13d0518aa7bf8e14d8bfaf {"aliquot_tag": "ALQ_1a65e46c", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.S56_R1.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R1_001.fastq.gz 2525735226 FASTQ S56_R1 submitted_unaligned CPTAC3 acd51a1a-6e7b-49ef-ac8b-80c28a6f3822 2efb6b4eb4ece9b9b05f5b1dd79b6c45 {"aliquot_tag": "ALQ_ae142bae", "sample": "S56", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.S56_R2.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R2_001.fastq.gz 2582486984 FASTQ S56_R2 submitted_unaligned CPTAC3 11d10042-d46f-4f41-a373-ff51eed11d6a e5195587823a70b3e0a90c061158173c {"aliquot_tag": "ALQ_ae142bae", "sample": "S56", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.transcriptome.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.transcriptome.gdc_realn.bam 10997884589 BAM transcriptome harmonized CPTAC3 d93e1d6e-8e28-41a6-b3da-37b5990af0a3 5deb9fbda416e39c4b6b935a7a401d66 {"aliquot_tag": "ALQ_1a65e46c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.RNA-Seq.transcriptome.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.transcriptome.gdc_realn.bam 1809595174 BAM transcriptome harmonized CPTAC3 378645e2-8fc0-4c8b-97fc-a3976bbb0484 1796d079ccac41edcab7ef6198aeaabb {"aliquot_tag": "ALQ_ae142bae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.WGS.N C3L-01355 UCEC WGS blood_normal CPT0081810002 CPT0081810002.WholeGenome.RP-1303.bam 72208884210 BAM submitted_aligned CPTAC3 a8a8600a-34d9-4693-865a-6ae8957ccbab 1110ae6806d1c7d6436864fc1a0d07c8 {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01355.WGS.N.hg38 C3L-01355 UCEC WGS blood_normal CPT0081810002 38f93d50-f23b-4b2c-9add-b7a8b225357b_gdc_realn.bam 107263824204 BAM harmonized CPTAC3 c683c8b1-6683-46a0-b7a3-43c153a8ef5c b161a8c374d72975ca99366da3637c81 {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01355.WGS.T C3L-01355 UCEC WGS tumor CPT0083580006 CPT0083580006.WholeGenome.RP-1303.bam 64473052121 BAM submitted_aligned CPTAC3 89fdecb0-51f2-45c5-bade-23f61f62b677 7f0fca1a7f0b0027344af085905b8658 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.WGS.T.hg38 C3L-01355 UCEC WGS tumor CPT0083580006 b11dd0cb-f42c-4c2e-87af-aedc2e5f8272_gdc_realn.bam 96346291928 BAM harmonized CPTAC3 c6e73847-d928-4be5-9688-e38ae6742870 ac9abb95f20659e9c397869313b1ec3f {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.WXS.N C3L-01355 UCEC WXS blood_normal CPT0081810002 CPT0081810002.WholeExome.RP-1303.bam 31253657004 BAM submitted_aligned CPTAC3 db4b3c08-5c98-497f-9127-bb31a5620db4 54c3558388306c8437795a9fa110d89c {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01355.WXS.N.hg38 C3L-01355 UCEC WXS blood_normal CPT0081810002 38f93d50-f23b-4b2c-9add-b7a8b225357b_gdc_realn.bam 42743830072 BAM harmonized CPTAC3 ac192f91-2c4f-4a62-a243-1a6c2e120380 70b4f79537dc07d03069a509744bbc11 {"aliquot_tag": "ALQ_5268853d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01355.WXS.T C3L-01355 UCEC WXS tumor CPT0083580006 CPT0083580006.WholeExome.RP-1303.bam 30346724366 BAM submitted_aligned CPTAC3 fb594274-f82d-42c0-b1ad-a23f14319a36 70beaed118534893aa702ec5827a50d1 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01355.WXS.T.hg38 C3L-01355 UCEC WXS tumor CPT0083580006 b11dd0cb-f42c-4c2e-87af-aedc2e5f8272_gdc_realn.bam 40577707227 BAM harmonized CPTAC3 565ab56b-fe08-49b2-92cd-8666c15dc61f 229dd64b9388ec51059c6371b9924f37 {"aliquot_tag": "ALQ_731421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01425.MethArray.Green.Tbm C3L-01425 AML Methylation_Array tumor_bone_marrow CPT0274230002 205555380130_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fc129fa4-defc-41d9-9f13-baf89e165ebb 37482e01e07e920ff5c9121d031a4167 {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.MethArray.Red.Tbm C3L-01425 AML Methylation_Array tumor_bone_marrow CPT0274230002 205555380130_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 01a1a579-eae0-45d8-8a48-2db566a227b0 f8e81688a7346e00c3f4c5ddbef346a8 {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.miRNA-Seq.S5_L001_R1.Tbm C3L-01425 AML miRNA-Seq tumor_bone_marrow CPT0274240002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L001_R1_001.unaln.bam 192936481 BAM S5_L001_R1 submitted_unaligned CPTAC3 9358392d-dfaf-40ef-b45c-94157adec7b7 8e817df7963ed0cbc03c24fe97f5ff99 {"aliquot_tag": "ALQ_9efd3ca6", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.miRNA-Seq.Tbm.hg38 C3L-01425 AML miRNA-Seq tumor_bone_marrow CPT0274240002 fb218c91-d107-49bb-ad62-a86b30f3517a_mirnaseq_gdc_realn.bam 212839610 BAM harmonized CPTAC3 0633e282-be72-4001-a15e-d59db46233b0 e95fc10c11508834b14b61ef22bf1b97 {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.RNA-Seq.chimeric.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.chimeric.gdc_realn.bam 51555637 BAM chimeric harmonized CPTAC3 8f626e89-02bc-46c5-bacf-fd5febe43938 8d092dd8c546404eb3203d79add93125 {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.RNA-Seq.genomic.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.genomic.gdc_realn.bam 8290250700 BAM genomic harmonized CPTAC3 35362d20-50a1-41df-8d01-2d6f7c8bcb93 b4b3ad13ecf52b4495870e72ad7a845c {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.RNA-Seq.S62_L008_R1.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R1_001.fastq.gz 3746499264 FASTQ S62_L008_R1 submitted_unaligned CPTAC3 4d5c2e00-b36f-4fa5-8b86-888dce250da2 79a7c28e97103dbefa149b94c968bef7 {"aliquot_tag": "ALQ_9efd3ca6", "sample": "S62", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.RNA-Seq.S62_L008_R2.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R2_001.fastq.gz 4281876354 FASTQ S62_L008_R2 submitted_unaligned CPTAC3 e7d86046-cfb4-4b3b-b891-c28b1571226e ae2907da366c10ffeadf70ff7faf10d4 {"aliquot_tag": "ALQ_9efd3ca6", "sample": "S62", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.RNA-Seq.transcriptome.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.transcriptome.gdc_realn.bam 7699137357 BAM transcriptome harmonized CPTAC3 14f8c8bc-e5de-4e34-ad81-8ee90d981a32 a13cb5a974dfe4f009e6309835f10dfe {"aliquot_tag": "ALQ_9efd3ca6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.WGS.Nbc C3L-01425 AML WGS buccal_normal CPT0274300002 CPT0274300002.WholeGenome.RP-2158.bam 62074873853 BAM submitted_aligned CPTAC3 d946a253-44d8-4c7b-bd21-0dc5960c0ec1 ef1735d4e54e9b849b72b0f205543fea {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01425.WGS.Nbc.hg38 C3L-01425 AML WGS buccal_normal CPT0274300002 09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wgs_gdc_realn.bam 210091772785 BAM harmonized CPTAC3 3289b16b-0383-4ece-914c-5ae5fa903955 e949c9dd89b7c0c5fbbffcd96dfcda39 {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01425.WGS.Tbm C3L-01425 AML WGS tumor_bone_marrow CPT0274230002 CPT0274230002.WholeGenome.RP-2158.bam 50386399339 BAM submitted_aligned CPTAC3 a1185370-8fe3-49e6-a4d3-358a846227a2 193be1b828217a4b61f3f226d733847a {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.WGS.Tbm.hg38 C3L-01425 AML WGS tumor_bone_marrow CPT0274230002 e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wgs_gdc_realn.bam 152059527928 BAM harmonized CPTAC3 3634e8ee-419e-422b-a492-b63f07b3840a 7836e6dad357bba9d57888eaf5a1535d {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.WXS.Nbc C3L-01425 AML WXS buccal_normal CPT0274300002 CPT0274300002.WholeExome.RP-1303.bam 40847720232 BAM submitted_aligned CPTAC3 4993a91a-acfc-496b-b990-fa96274c1c66 8a2fcd56841da0c64adb88fa29bb8fff {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01425.WXS.Nbc.hg38 C3L-01425 AML WXS buccal_normal CPT0274300002 09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wxs_gdc_realn.bam 56301198713 BAM harmonized CPTAC3 0beb5388-ac5c-42d6-afc4-478ba0a192d0 18b007c281a12b6ccdb209efc2080d23 {"aliquot_tag": "ALQ_a02149c3", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01425.WXS.Tbm C3L-01425 AML WXS tumor_bone_marrow CPT0274230002 CPT0274230002.WholeExome.RP-1303.bam 51575026777 BAM submitted_aligned CPTAC3 1b173ed7-cf59-4cd1-8bcc-c2508f4a44ef 99ef2003503a055f8e54e48a58967fde {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01425.WXS.Tbm.hg38 C3L-01425 AML WXS tumor_bone_marrow CPT0274230002 e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wxs_gdc_realn.bam 72395346430 BAM harmonized CPTAC3 1089fe15-b965-4a52-8fbe-c43ac6fdab80 6a25d25d47f51b089424dc71cf88b04a {"aliquot_tag": "ALQ_2cdde0b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-01426.MethArray.Green.Tpb C3L-01426 AML Methylation_Array tumor_peripheral_blood CPT0284650002 205987780094_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 cf4d30f0-f95d-4e99-b079-4f9cc4ed75ce cb22d08cb8868c30b3a40926555e6fba {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.MethArray.Red.Tpb C3L-01426 AML Methylation_Array tumor_peripheral_blood CPT0284650002 205987780094_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 3119403c-fc14-4ee5-a1ca-bfb840a78d5e e2b34d647f7b4ed586fbd4374ec03094 {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.miRNA-Seq.S5_L001_R1.Tpb C3L-01426 AML miRNA-Seq tumor_peripheral_blood CPT0284660002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGGCG_S5_L001_R1_001.unaln.bam 226938523 BAM S5_L001_R1 submitted_unaligned CPTAC3 9e900849-381e-47ea-8126-b12952f6ebd6 ee0173e9489a88dd82f9806a03fabf2e {"aliquot_tag": "ALQ_a68c3f7c", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.miRNA-Seq.Tpb.hg38 C3L-01426 AML miRNA-Seq tumor_peripheral_blood CPT0284660002 58cdb69a-8732-4879-a59c-6c9cec72ecb2_mirnaseq_gdc_realn.bam 245138572 BAM harmonized CPTAC3 86be831c-6f39-46fa-a21d-4a7c191cdbf5 3d0b391a22aff5c3f98676274085c808 {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.RNA-Seq.chimeric.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.chimeric.gdc_realn.bam 283168028 BAM chimeric harmonized CPTAC3 a13c6e4e-18e8-4d5c-8f33-7abe83673e81 515afb84d43dd67dea3e86b938c7e67d {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.RNA-Seq.genomic.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.genomic.gdc_realn.bam 7504924340 BAM genomic harmonized CPTAC3 31d09381-5988-47a9-b430-6a91bd4d59b3 3ce6f241a844f4b8e4c9bb0c39a8bf3b {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.RNA-Seq.S3_L001_R1.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R1_001.fastq.gz 3181868063 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 8968ac3f-af34-49ac-bda9-abfc9b0e6373 ce02dffddecb3732cd3ae4b802013210 {"aliquot_tag": "ALQ_a68c3f7c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.RNA-Seq.S3_L001_R2.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R2_001.fastq.gz 3581567319 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 fe29e9a1-2fc3-4f7d-a588-d6a803878000 36d7c0f424e6cd19c0dbc5e2af66a0ba {"aliquot_tag": "ALQ_a68c3f7c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.RNA-Seq.transcriptome.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.transcriptome.gdc_realn.bam 9573441156 BAM transcriptome harmonized CPTAC3 00c1d202-c4b5-483e-8c2f-59f53b5dd802 49923519a076f1ef8fe8133b64aacb7c {"aliquot_tag": "ALQ_a68c3f7c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.WGS.Nbc C3L-01426 AML WGS buccal_normal CPT0284710001 CPT0284710001.WholeGenome.RP-2158.bam 50194555609 BAM submitted_aligned CPTAC3 4e0d3d0a-58e1-4a97-960f-ace505493569 54662c220d4adb94bf64c7e76aa7e201 {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01426.WGS.Nbc.hg38 C3L-01426 AML WGS buccal_normal CPT0284710001 d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wgs_gdc_realn.bam 151915395331 BAM harmonized CPTAC3 d6162a5c-7200-4643-ad34-2f17276ad642 8cd265d2705abe514a772f4305a89a8a {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01426.WGS.Tpb C3L-01426 AML WGS tumor_peripheral_blood CPT0284650002 CPT0284650002.WholeGenome.RP-2158.bam 40851704572 BAM submitted_aligned CPTAC3 303de2ae-ea0b-4686-9934-409f3408e8a5 b36b3de45cff1c9f57ad34ec2cbfb533 {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.WGS.Tpb.hg38 C3L-01426 AML WGS tumor_peripheral_blood CPT0284650002 0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wgs_gdc_realn.bam 123766292830 BAM harmonized CPTAC3 600534ec-3fd0-420d-9d39-45bf59abea96 9b3db6128aa8c6322111ebe55e60fe45 {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.WXS.Nbc C3L-01426 AML WXS buccal_normal CPT0284710001 CPT0284710001.WholeExome.RP-1303.bam 27252005698 BAM submitted_aligned CPTAC3 bc33252a-2427-4340-840e-321f869c4272 6ed100c19f1b48df69f42a7c0322468f {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01426.WXS.Nbc.hg38 C3L-01426 AML WXS buccal_normal CPT0284710001 d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wxs_gdc_realn.bam 36774705127 BAM harmonized CPTAC3 fd8ed386-d649-451f-bc9d-c3f7122c67d4 aa59eed52efa807a72652a391637072f {"aliquot_tag": "ALQ_46f96173", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01426.WXS.Tpb C3L-01426 AML WXS tumor_peripheral_blood CPT0284650002 CPT0284650002.WholeExome.RP-1303.bam 25186131845 BAM submitted_aligned CPTAC3 c29afc3d-4702-4aff-8d7c-76e05dd9aaf6 21f7488a3e7fcc324dac5ecc6964765b {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01426.WXS.Tpb.hg38 C3L-01426 AML WXS tumor_peripheral_blood CPT0284650002 0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wxs_gdc_realn.bam 34689978278 BAM harmonized CPTAC3 47de7679-eeae-4887-9f0d-948efbe6eb3e 70076f6f667b56045057a6ff48ee903a {"aliquot_tag": "ALQ_e12c45ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-01427.MethArray.Green.Tpb C3L-01427 AML Methylation_Array tumor_peripheral_blood CPT0275410002 205987780094_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e839fca1-4f3f-48d9-98a0-cd31e19d0fed f6c68eae91703cf3c3e238f1458e74e4 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.MethArray.Red.Tpb C3L-01427 AML Methylation_Array tumor_peripheral_blood CPT0275410002 205987780094_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 deb0eb13-4caf-4ff5-9501-9068f34b3699 351db33d6f26d0ba4c3f686484ecd99f {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.miRNA-Seq.S6_L001_R1.Tpb C3L-01427 AML miRNA-Seq tumor_peripheral_blood CPT0275430002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L001_R1_001.unaln.bam 201593405 BAM S6_L001_R1 submitted_unaligned CPTAC3 5c32f9dd-27ac-4985-a009-0b729eb323f0 2c012983a0ecc1d2cf1db655bc1d4d5b {"aliquot_tag": "ALQ_5cf3081f", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.miRNA-Seq.Tpb.hg38 C3L-01427 AML miRNA-Seq tumor_peripheral_blood CPT0275430002 b5278fdd-0909-4723-95ca-71f8809bba4a_mirnaseq_gdc_realn.bam 216865124 BAM harmonized CPTAC3 11396689-7b80-4245-ac54-bc978ca7e9ed 854ae17acf817526d7e5e47379d25aa3 {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.RNA-Seq.chimeric.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.chimeric.gdc_realn.bam 554449558 BAM chimeric harmonized CPTAC3 e9655a39-6841-4039-b75f-e5d8023e6f49 0ff636ba1f22e2f87188f8688f99fcac {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.RNA-Seq.genomic.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.genomic.gdc_realn.bam 9362616231 BAM genomic harmonized CPTAC3 313c0d92-b237-4dd9-89d4-42b8c830c644 6b0277de6d346bf86093da49a5f7681e {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.RNA-Seq.S1_L001_R1.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R1_001.fastq.gz 4438127361 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 7874f5f7-1f87-491e-9daa-b1367b31131e c7a65f6270a55da3a96ef29faf025c14 {"aliquot_tag": "ALQ_5cf3081f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.RNA-Seq.S1_L001_R2.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R2_001.fastq.gz 4801249773 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 28292aa9-7a99-4b48-9e8a-dcc7410d30f9 33b4ed659cfa735ca9caa916207f410e {"aliquot_tag": "ALQ_5cf3081f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.RNA-Seq.transcriptome.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.transcriptome.gdc_realn.bam 10628196789 BAM transcriptome harmonized CPTAC3 e6fc1eb4-2ca4-4674-a344-01fe2f87451b 727b5dbdf6e5f46c79117cdbec9d648a {"aliquot_tag": "ALQ_5cf3081f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.WGS.Nbc C3L-01427 AML WGS buccal_normal CPT0274390002 CPT0274390002.WholeGenome.RP-2158.bam 47139336118 BAM submitted_aligned CPTAC3 b067252c-e827-48f8-8eca-642918057770 91a3881fc13ebbc6482ee67ed6414706 {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01427.WGS.Nbc.hg38 C3L-01427 AML WGS buccal_normal CPT0274390002 3a131fec-e5c3-4f69-a650-79f405d9122f_wgs_gdc_realn.bam 145700879645 BAM harmonized CPTAC3 769c53ae-858c-4c6f-b0b5-4733b5d3be14 6370f08f7ef6f7d074ae7a5ef73b808f {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01427.WGS.Tpb C3L-01427 AML WGS tumor_peripheral_blood CPT0275410002 CPT0275410002.WholeGenome.RP-2158.bam 44251140875 BAM submitted_aligned CPTAC3 d3705a16-00aa-4ab7-9bdb-3af2fe58efb2 8e1dd06cf44e467e9b6f5b037ff91e84 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.WGS.Tpb.hg38 C3L-01427 AML WGS tumor_peripheral_blood CPT0275410002 cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wgs_gdc_realn.bam 130747771504 BAM harmonized CPTAC3 4e6e8a93-e0e6-4259-9227-345d4526b521 e1ca9dd3dd6e4a0691b82a52c89b9d31 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.WXS.Nbc C3L-01427 AML WXS buccal_normal CPT0274390002 CPT0274390002.WholeExome.RP-1303.bam 23949907101 BAM submitted_aligned CPTAC3 3ee4eebd-452c-443a-91d9-600cf32edc43 3ce4f0337716e348a041e0f8539aafc2 {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01427.WXS.Nbc.hg38 C3L-01427 AML WXS buccal_normal CPT0274390002 3a131fec-e5c3-4f69-a650-79f405d9122f_wxs_gdc_realn.bam 34638950956 BAM harmonized CPTAC3 c9de71de-5b62-4097-b051-80bc9e639eec 0c10ea3946e06e235ae0f545784ac495 {"aliquot_tag": "ALQ_ad312bb2", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01427.WXS.Tpb C3L-01427 AML WXS tumor_peripheral_blood CPT0275410002 CPT0275410002.WholeExome.RP-1303.bam 26955710136 BAM submitted_aligned CPTAC3 1ffb9452-dd02-474e-b861-a4a979a17887 d33652c693820578bf9c7e7ec2d6edb2 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01427.WXS.Tpb.hg38 C3L-01427 AML WXS tumor_peripheral_blood CPT0275410002 cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wxs_gdc_realn.bam 37273526505 BAM harmonized CPTAC3 272ef040-6001-45d8-8805-ae7028ab00ed 249653ad8393697d2c16fb1d01ec49c0 {"aliquot_tag": "ALQ_26335b7f", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-01453.ADD_de1eff5b.MethArray.Green.T C3L-01453 PDA Methylation_Array tumor CPT0108400009 202234370119_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1761f611-bae6-46e7-b78a-08d3970f8efd ae863cf0469b9fa40261f6fc5a0d2566 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.ADD_de1eff5b.MethArray.Red.T C3L-01453 PDA Methylation_Array tumor CPT0108400009 202234370119_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 bfad5e5e-07eb-4e58-a472-2b436013f27e 3afcb931fcc347854e44236ce9f27e7e {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.ADD_de1eff5b.WGS.T C3L-01453 PDA WGS tumor CPT0108400009 CPT0108400009.WholeGenome.RP-1303.bam 68032391689 BAM submitted_aligned CPTAC3 fd9a1805-9250-4504-9779-f049675ed072 d68f211967ff6ba8fe3b05cc761f4a86 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.ADD_de1eff5b.WGS.T.hg38 C3L-01453 PDA WGS tumor CPT0108400009 4494960c-3f83-48f8-8cd8-265f77a5aaa6_wgs_gdc_realn.bam 99095446357 BAM harmonized CPTAC3 18f0a656-615a-417e-92b1-953fbfd4afd6 70ff4a1b09a4ee957488980726b40440 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.ADD_de1eff5b.WXS.T C3L-01453 PDA WXS tumor CPT0108400009 CPT0108400009.WholeExome.RP-1303.bam 30673538693 BAM submitted_aligned CPTAC3 3d2bb53e-b0a8-497c-ac5b-0ae1e8f14e77 3528aac2a1d97b58067a2ba89e396db7 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.ADD_de1eff5b.WXS.T.hg38 C3L-01453 PDA WXS tumor CPT0108400009 4494960c-3f83-48f8-8cd8-265f77a5aaa6_wxs_gdc_realn.bam 41048585017 BAM harmonized CPTAC3 42c0a07c-097d-46be-a3e7-185f8e91c8a9 32675fbd59876b4b6d7a22524ef746d5 {"aliquot_tag": "ADD_de1eff5b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.miRNA-Seq.A.hg38 C3L-01453 PDA miRNA-Seq tissue_normal CPT0108410009 bea7c68d-6582-42af-a2cc-8943e5c8f07b_mirnaseq_gdc_realn.bam 257514526 BAM harmonized CPTAC3 5765fa1e-1ca3-4ef1-bfb1-d5f9fd22d598 c619cf656fd624d108bce264ef0e5c26 {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.miRNA-Seq.S15_L001_R1.A C3L-01453 PDA miRNA-Seq tissue_normal CPT0108410009 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L001_R1_001.unaln.bam 233520484 BAM S15_L001_R1 submitted_unaligned CPTAC3 d861a4f5-55af-497b-a82b-8928194cc44f 99063b49c1358df3da3d35baa8227e1f {"aliquot_tag": "ALQ_e37ed6eb", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.miRNA-Seq.S37_L003_R1.T C3L-01453 PDA miRNA-Seq tumor CPT0108400006 181119_UNC31-K00269_0165_AH27WCBBXY_AGTCAA_S37_L003_R1_001.unaln.bam 268638469 BAM S37_L003_R1 submitted_unaligned CPTAC3 32a4c03f-0e98-441e-ab8e-95f0f410cdd7 a196001647454d477c3461ecf6c0546f {"aliquot_tag": "ALQ_4ea1e2ca", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.miRNA-Seq.T.hg38 C3L-01453 PDA miRNA-Seq tumor CPT0108400006 f7551238-09df-4fe1-a946-b8b981e2a833_mirnaseq_gdc_realn.bam 292556040 BAM harmonized CPTAC3 d9493524-f5e8-4750-9ee4-66e091be72e9 3533f807673efef0b581cbe9fc0dcac0 {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.RNA-Seq.chimeric.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.chimeric.gdc_realn.bam 133319336 BAM chimeric harmonized CPTAC3 2e3d8141-1b6e-4b23-9b39-cd515cb7b190 1ca33fc5d82cdcf80242db735cf79e3e {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.RNA-Seq.chimeric.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.chimeric.gdc_realn.bam 74228570 BAM chimeric harmonized CPTAC3 8ffc4f11-c5a8-4e5e-9896-db046f6f4bd1 2ad923cb4934338b130869eea7bc40bb {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.RNA-Seq.genomic.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.genomic.gdc_realn.bam 10071949725 BAM genomic harmonized CPTAC3 79ac452b-2c22-4e9d-95d7-fb67ff5e690d 0e12c743788f027a18cdf6e750420ee7 {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.RNA-Seq.genomic.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.genomic.gdc_realn.bam 8166968229 BAM genomic harmonized CPTAC3 c6bf43b8-0abc-4b1f-8538-a9267edc3b56 48144bfc5cb066abfccdb04aea6b3cc6 {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.RNA-Seq.S18_L005_R1.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 4551298023 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 f6205c77-f737-451c-875e-f652c4e5512d ba0a445e7ff01b6f111fc11d00ed9659 {"aliquot_tag": "ALQ_e37ed6eb", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.RNA-Seq.S18_L005_R2.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 5028019962 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 3c23d217-08a0-4c70-87d6-a8f654143a21 7bfea299988b310ed6f5376147b68b00 {"aliquot_tag": "ALQ_e37ed6eb", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.RNA-Seq.S4_L007_R1.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R1_001.fastq.gz 3644119512 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 c281e89f-9c99-416f-acec-621a455321c1 3f74154189f79fada7f54e0f2fe5582d {"aliquot_tag": "ALQ_4ea1e2ca", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.RNA-Seq.S4_L007_R2.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4098243447 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 489b6a66-d9ad-4f86-8571-00e2aa811643 97f3e2d388a9b377512922fa23f5ffe9 {"aliquot_tag": "ALQ_4ea1e2ca", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.RNA-Seq.transcriptome.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.transcriptome.gdc_realn.bam 10762405173 BAM transcriptome harmonized CPTAC3 5fdd330f-73c7-4051-9133-cf962306ba18 c9693e79568540242277780c7b5cd0f7 {"aliquot_tag": "ALQ_e37ed6eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.RNA-Seq.transcriptome.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.transcriptome.gdc_realn.bam 9692242266 BAM transcriptome harmonized CPTAC3 e4058a97-b71e-489c-838d-dcd3367942b4 d2ee31dbd93d09d8c959cdf724acafc3 {"aliquot_tag": "ALQ_4ea1e2ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.Targeted.T C3L-01453 PDA Targeted_Sequencing tumor CPT0108400009_1 CPT0108400009_1.CustomSelection.RP-1303.PDO-18786.bam 4060470419 BAM submitted_aligned CPTAC3 78e1f9ea-e48e-455f-951f-1449e5cccf23 959b8afaa1703662d21e32ea7b2799ae {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.Targeted.T.hg38 C3L-01453 PDA Targeted_Sequencing tumor CPT0108400009_1 9b68ed20-1ebc-417a-acb0-2c684a84c39c_targetedsequencing_gdc_realn.bam 5858496818 BAM harmonized CPTAC3 e7926789-8d0c-44f7-89b8-b83c18541ef6 91c842a7dc63c04f82d57d312f89e22b {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.WGS.A C3L-01453 PDA WGS tissue_normal CPT0108410006 CPT0108410006.WholeGenome.RP-1303.bam 65896731565 BAM submitted_aligned CPTAC3 c895e660-878a-4f02-bfeb-f2d801c884e6 88b4c06f24cbd0d9be4039402aa7ebbb {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.WGS.A.hg38 C3L-01453 PDA WGS tissue_normal CPT0108410006 b5c2ce79-efc4-4838-a64b-d10699c59075_wgs_gdc_realn.bam 96938177064 BAM harmonized CPTAC3 2f57bd77-2dce-4c3f-8eb4-b391d8f07345 df0e40f061e780cc6269c13291624bd1 {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.WGS.N C3L-01453 PDA WGS blood_normal CPT0108330002 CPT0108330002.WholeGenome.RP-1303.bam 73130536542 BAM submitted_aligned CPTAC3 67e40708-f6bb-4afd-b712-e4fcbb78567e fb20214de19c9b0464e515db7c9705b1 {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01453.WGS.N.hg38 C3L-01453 PDA WGS blood_normal CPT0108330002 dc6ce414-625c-4290-b5c9-b46f72582478_wgs_gdc_realn.bam 107577882836 BAM harmonized CPTAC3 cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d 841206d8299c2adb35cf2e05772fa6dc {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01453.WXS.A C3L-01453 PDA WXS tissue_normal CPT0108410006 CPT0108410006.WholeExome.RP-1303.bam 27503878831 BAM submitted_aligned CPTAC3 98532fec-93e1-4496-92cc-7fcb2d2a5170 e21a29220bbffab9ec3d583b6cc1d80e {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.WXS.A.hg38 C3L-01453 PDA WXS tissue_normal CPT0108410006 b5c2ce79-efc4-4838-a64b-d10699c59075_wxs_gdc_realn.bam 36755861699 BAM harmonized CPTAC3 caeb87d8-96b7-4a47-9065-1b68e6943418 b88d596d388c1c8ba0f984ff1cf84d77 {"aliquot_tag": "ALQ_73c1cb7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01453.WXS.N C3L-01453 PDA WXS blood_normal CPT0108330002 CPT0108330002.WholeExome.RP-1303.bam 35080355508 BAM submitted_aligned CPTAC3 0dee4e23-e89c-4eb8-916d-c9d43276bb16 c3a7549f9f7c362b48b99b3be94e3de2 {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01453.WXS.N.hg38 C3L-01453 PDA WXS blood_normal CPT0108330002 dc6ce414-625c-4290-b5c9-b46f72582478_wxs_gdc_realn.bam 47787570422 BAM harmonized CPTAC3 587a23b3-2719-4158-9561-88037fd381a2 48c714ab125ed473acf2356fefb77182 {"aliquot_tag": "ALQ_13696cbb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01453.WXS.T C3L-01453 PDA WXS tumor CPT0108400009_1 CPT0108400009_1.WholeExome.RP-1303.bam 57007759908 BAM submitted_aligned CPTAC3 f24036e7-4034-429f-a129-bbaaeded4b41 b8bf55cdf5c105e2850e20760b6833f2 {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01453.WXS.T.hg38 C3L-01453 PDA WXS tumor CPT0108400009_1 9b68ed20-1ebc-417a-acb0-2c684a84c39c_wxs_gdc_realn.bam 76881888207 BAM harmonized CPTAC3 f15f08bf-e6a2-41f6-bafe-76f50b389ef6 bb508e58924894a2064b0e467418f5bd {"aliquot_tag": "ALQ_5969e652", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.MethArray.Green.A C3L-01455 LSCC Methylation_Array tissue_normal CPT0108600006 203220070157_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0c6af48c-d42d-421d-9464-f9042040a6a4 bd023000b4d7131002d232944cab797a {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.MethArray.Green.T C3L-01455 LSCC Methylation_Array tumor CPT0108560009 202234380069_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f27a0620-189e-492e-9f4b-ed13f2a24a01 d405a549efb312a1a5a9f6c181c1bd4b {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.MethArray.Red.A C3L-01455 LSCC Methylation_Array tissue_normal CPT0108600006 203220070157_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 3aa6a606-e750-4bba-855c-e9e5a1888690 a86b49b558b18f4359905aebbb9dd9a3 {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.MethArray.Red.T C3L-01455 LSCC Methylation_Array tumor CPT0108560009 202234380069_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 ef7029ba-dc99-435e-b2e7-37191af51b17 99e428832e8e9ee4c0c5db874960b129 {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.miRNA-Seq.A.hg38 C3L-01455 LSCC miRNA-Seq tissue_normal CPT0108600009 284507b5-32e7-4e2a-ba74-07d3ec53a487_mirnaseq_gdc_realn.bam 262480174 BAM harmonized CPTAC3 ce9a55ed-cbea-46dc-9398-c7e741814293 83c79e75c655fb5e62faa3fcac8cb7b4 {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.miRNA-Seq.S38_L003_R1.T C3L-01455 LSCC miRNA-Seq tumor CPT0108560006 181119_UNC31-K00269_0165_AH27WCBBXY_AGTTCC_S38_L003_R1_001.unaln.bam 210619484 BAM S38_L003_R1 submitted_unaligned CPTAC3 2502959c-aba5-46ef-bf26-4ad5a1ed7d33 d05773e8024bb54ffab6188f8f5486f7 {"aliquot_tag": "ALQ_abdc4cf", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.miRNA-Seq.S47_L006_R1.A C3L-01455 LSCC miRNA-Seq tissue_normal CPT0108600009 181113_UNC31-K00269_0164_AH23NNBBXY_GAGTGG_S47_L006_R1_001.unaln.bam 233263172 BAM S47_L006_R1 submitted_unaligned CPTAC3 4ad0a1fa-df15-4008-bd09-b41be5fd20e1 a45292bc7be960e504d69f4501223c52 {"aliquot_tag": "ALQ_93d65e50", "sample": "S47", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.miRNA-Seq.T.hg38 C3L-01455 LSCC miRNA-Seq tumor CPT0108560006 d40aab85-d14e-4420-a7b6-8c87cffdf9bf_mirnaseq_gdc_realn.bam 231010181 BAM harmonized CPTAC3 d7f3b2fd-501f-463b-80f6-108b6ac988e8 8bd83c4b1811443e37fa6ab9bafef4ae {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.RNA-Seq.chimeric.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.chimeric.gdc_realn.bam 43187413 BAM chimeric harmonized CPTAC3 158430a1-3d24-407e-82b7-c10bfee1b6c3 88fdb659b69dc9903ee228ea2b28ae1a {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.RNA-Seq.chimeric.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.chimeric.gdc_realn.bam 99210508 BAM chimeric harmonized CPTAC3 70d587de-64b4-49ec-8f83-bb6fdd4861bf 5d56a611ed5f6f93e93f0b62ec2568b9 {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.RNA-Seq.genomic.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.genomic.gdc_realn.bam 8576021050 BAM genomic harmonized CPTAC3 3beb7749-6b69-491c-920a-67c57ced9685 891c80c66ec858467bd1c97bd12d0641 {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.RNA-Seq.genomic.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.genomic.gdc_realn.bam 9837935642 BAM genomic harmonized CPTAC3 ba04ca77-3093-4e6a-8937-33c7dc072eae ad76afb78f9f1d0518501c8e9d55301b {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.RNA-Seq.S22_L006_R1.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 4042577316 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 9f009ff0-5b5b-4355-9421-1d98b9d4310c e630217a5d49f66e1c9854fdb781d750 {"aliquot_tag": "ALQ_abdc4cf", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.RNA-Seq.S22_L006_R2.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 4516104896 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 b416578f-5d0e-49fc-be46-ad8150cfb1b9 a30a76295104381b122be5a7a5c33efb {"aliquot_tag": "ALQ_abdc4cf", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.RNA-Seq.S8_L002_R1.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3998696668 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 ee74ec6a-6226-4430-bf1b-f96aa946931d aaeb229421c05122c3714ebd8ea3fedd {"aliquot_tag": "ALQ_93d65e50", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.RNA-Seq.S8_L002_R2.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4361133643 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 fad524b8-265f-4b7b-bcc9-d2cddba083c6 9d5d76a84fff086fcbbcd36b05ec5c1f {"aliquot_tag": "ALQ_93d65e50", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.RNA-Seq.transcriptome.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.transcriptome.gdc_realn.bam 10753406411 BAM transcriptome harmonized CPTAC3 9f95629b-5e03-4b5f-a06a-3f75710feac3 ea14758e4a7b509283f99c0b73b00e22 {"aliquot_tag": "ALQ_93d65e50", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.RNA-Seq.transcriptome.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.transcriptome.gdc_realn.bam 10859607228 BAM transcriptome harmonized CPTAC3 6a25b28f-d43d-4481-a64e-64f18294590e 551bfce6687128be28f17cb7e9b85618 {"aliquot_tag": "ALQ_abdc4cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.WGS.A C3L-01455 LSCC WGS tissue_normal CPT0108600006 CPT0108600006.WholeGenome.RP-1303.bam 59875554142 BAM submitted_aligned CPTAC3 9b8f7cfd-6b58-4b5a-9d42-2c6f71865400 40cf8c8cd3df93fa9a3cbc75dc9b048f {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.WGS.A.hg38 C3L-01455 LSCC WGS tissue_normal CPT0108600006 23e914a3-9538-4816-90ca-95ef0960b86d_wgs_gdc_realn.bam 87546027787 BAM harmonized CPTAC3 b11a1346-850e-4233-8a96-ed1e6ff0de8d 00bde5d5a33cec11afc26d82001db3d8 {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.WGS.N C3L-01455 LSCC WGS blood_normal CPT0108340002 CPT0108340002.WholeGenome.RP-1303.bam 52020666434 BAM submitted_aligned CPTAC3 32396f9d-037a-4418-8a15-cf7d70d05571 08d7e63aef62a8a0cb723aacc9f2b0b0 {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01455.WGS.N.hg38 C3L-01455 LSCC WGS blood_normal CPT0108340002 cf3222f7-40e1-48fa-af77-ec1ca37435c2_wgs_gdc_realn.bam 78130530534 BAM harmonized CPTAC3 2166ea32-e285-4f46-babf-70f7c19fea16 fc9faf6df5edf1ba7289cec5e280a1ca {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01455.WGS.T C3L-01455 LSCC WGS tumor CPT0108560009 CPT0108560009.WholeGenome.RP-1303.bam 70474121486 BAM submitted_aligned CPTAC3 a998f39c-1c86-48b2-b0f9-e703e0c90a5c 85db4ad7010a08f2d9e2a43be3e386ae {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.WGS.T.hg38 C3L-01455 LSCC WGS tumor CPT0108560009 d300f0c0-0904-42c8-bddc-973ff46f5994_wgs_gdc_realn.bam 104646376857 BAM harmonized CPTAC3 820aac6d-53f3-4c65-a26b-f7a5217ad15b 32e873fc65226beab42a914965901bd8 {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.WXS.A C3L-01455 LSCC WXS tissue_normal CPT0108600006 CPT0108600006.WholeExome.RP-1303.bam 21825838800 BAM submitted_aligned CPTAC3 20d9cac2-5f36-4691-a3ff-05303c6a7290 6347102959476f66f7226ebbc961b8bc {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.WXS.A.hg38 C3L-01455 LSCC WXS tissue_normal CPT0108600006 23e914a3-9538-4816-90ca-95ef0960b86d_wxs_gdc_realn.bam 29364664090 BAM harmonized CPTAC3 e1a65824-32c1-49d6-98fb-67ad79f957f1 20ac83b5b4afde528256729d03d23193 {"aliquot_tag": "ALQ_36943c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01455.WXS.N C3L-01455 LSCC WXS blood_normal CPT0108340002 CPT0108340002.WholeExome.RP-1303.bam 21980901072 BAM submitted_aligned CPTAC3 192a8730-ee42-4e91-b7c1-5200a8375b2a 1243a5fc4b90b3ef16ae7dc6661eb19e {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01455.WXS.N.hg38 C3L-01455 LSCC WXS blood_normal CPT0108340002 cf3222f7-40e1-48fa-af77-ec1ca37435c2_wxs_gdc_realn.bam 30131827599 BAM harmonized CPTAC3 7c9485dc-7433-471e-8298-d48100d5c895 2bea4b275d6f2f0de6450d5050a777b5 {"aliquot_tag": "ALQ_a149b0ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01455.WXS.T C3L-01455 LSCC WXS tumor CPT0108560009 CPT0108560009.WholeExome.RP-1303.bam 23456814712 BAM submitted_aligned CPTAC3 d9e5cd29-acdc-4962-915b-a4ecfc689086 c7f98c84736f132c4103d5eb8763a99e {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01455.WXS.T.hg38 C3L-01455 LSCC WXS tumor CPT0108560009 d300f0c0-0904-42c8-bddc-973ff46f5994_wxs_gdc_realn.bam 32089993008 BAM harmonized CPTAC3 268f70e1-1b4d-498d-b9dc-54a99b3a161c a31347033a485fc9da71ca030ca7c4ca {"aliquot_tag": "ALQ_9a02d95e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01458.MethArray.Green.T C3L-01458 CCRCC Methylation_Array tumor CPT0390170006 205549610122_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 81a8b531-c51f-410c-880e-4e5c59f889e6 e47c42ebc388b6a023ce9d957ecf757d {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.MethArray.Red.T C3L-01458 CCRCC Methylation_Array tumor CPT0390170006 205549610122_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e1dcf797-6543-440f-93d5-e9c95424e87c a1cd6d81014723fa9808a81c3e193ff9 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.miRNA-Seq.S31_L002_R1.T C3L-01458 CCRCC miRNA-Seq tumor CPT0390170009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GACGAC_S31_L002_R1_001.unaln.bam 217992675 BAM S31_L002_R1 submitted_unaligned CPTAC3 5eb469ed-6035-4abd-a844-d267773d4872 3ceeb2c1b381c9f653d2b2ed7a136557 {"aliquot_tag": "ALQ_3ea5cf32", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.miRNA-Seq.T.hg38 C3L-01458 CCRCC miRNA-Seq tumor CPT0390170009 714cc837-dd3c-4cf3-8a4f-f0696f0c73cf_mirnaseq_gdc_realn.bam 233164726 BAM harmonized CPTAC3 5f58803d-6d53-4a44-9071-2138fc09ae95 4aefb3e8e3f5c2db61c963742ca9bb27 {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.RNA-Seq.chimeric.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.chimeric.gdc_realn.bam 445680814 BAM chimeric harmonized CPTAC3 93228a4e-ec5a-4079-8a88-d7a998c682aa c08f03f32b80d3245e2d64f33936cf30 {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.RNA-Seq.genomic.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.genomic.gdc_realn.bam 9578086078 BAM genomic harmonized CPTAC3 127d008c-6a01-4fca-89b8-750b8b2a2c83 052cc0242c0656f91f3c9f8d45073efe {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.RNA-Seq.S23_L007_R1.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R1_001.fastq.gz 4660415968 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 4bf103dd-9eae-436b-8760-fca54c6ac329 92167d0cc77257eaf73d5a6e62297c19 {"aliquot_tag": "ALQ_3ea5cf32", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.RNA-Seq.S23_L007_R2.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R2_001.fastq.gz 5178408148 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 3d08172e-06e8-43f7-a9ab-7df17eec4f52 d3324dad7730abe39030a5b61e5c2488 {"aliquot_tag": "ALQ_3ea5cf32", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.RNA-Seq.transcriptome.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.transcriptome.gdc_realn.bam 11216396346 BAM transcriptome harmonized CPTAC3 9b7d08cf-d205-4029-99c4-5cda2d363a0e 3f183859be479a64d5319d3ddd42aabf {"aliquot_tag": "ALQ_3ea5cf32", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.WGS.N C3L-01458 CCRCC WGS blood_normal CPT0390230002 CPT0390230002.WholeGenome.RP-2158.bam 23037302434 BAM submitted_aligned CPTAC3 b1e67fc4-3b73-4f2b-a294-b9c4bd32e829 e6fdf358726d81efa2cf762b85fa2a2d {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01458.WGS.N.hg38 C3L-01458 CCRCC WGS blood_normal CPT0390230002 d6925774-b5fa-4272-8e37-e92825c5af19_wgs_gdc_realn.bam 70652559004 BAM harmonized CPTAC3 2e2868ab-fdbf-44d2-a472-a0ca6a1cbc48 29ab65a6abf17f241a24bbb4560b0e79 {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01458.WGS.T C3L-01458 CCRCC WGS tumor CPT0390170006 CPT0390170006.WholeGenome.RP-2158.bam 24529184603 BAM submitted_aligned CPTAC3 dd8e2cb5-9a0f-496e-972a-c8b452c1f121 290e7de644d28978308bdb50baba9f19 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.WGS.T.hg38 C3L-01458 CCRCC WGS tumor CPT0390170006 adcd2461-33e3-4a63-b714-f7e86d5a1171_wgs_gdc_realn.bam 75815051472 BAM harmonized CPTAC3 01a2640e-f288-4711-b415-7ad5dbbdc94e fac7aa1b37c4f7fb8ec937987b471b62 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.WXS.N C3L-01458 CCRCC WXS blood_normal CPT0390230002 CPT0390230002.WholeExome.RP-1303.bam 21128885189 BAM submitted_aligned CPTAC3 55420536-61d8-49ba-b799-b8690b1f8256 30a0a65119934abdf75377b3936ff901 {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01458.WXS.N.hg38 C3L-01458 CCRCC WXS blood_normal CPT0390230002 d6925774-b5fa-4272-8e37-e92825c5af19_wxs_gdc_realn.bam 28881154243 BAM harmonized CPTAC3 99bed505-d683-4fe1-a2e2-e9e155902126 93cd423fc67ef04e0b8d2a4a41dd303c {"aliquot_tag": "ALQ_da63c2d4", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01458.WXS.T C3L-01458 CCRCC WXS tumor CPT0390170006 CPT0390170006.WholeExome.RP-1303.bam 23258545826 BAM submitted_aligned CPTAC3 f2f32a58-25f8-4950-98eb-ac9893ba0eb4 13f627bcdbb6d69b236997f98f2135a7 {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01458.WXS.T.hg38 C3L-01458 CCRCC WXS tumor CPT0390170006 adcd2461-33e3-4a63-b714-f7e86d5a1171_wxs_gdc_realn.bam 31757442182 BAM harmonized CPTAC3 5802f71d-b31b-4ba2-9d52-17bb361deba2 4ec33600ee33caa80ca68d2c807c88cd {"aliquot_tag": "ALQ_ae1ad2a3", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01459.MethArray.Green.T C3L-01459 CCRCC Methylation_Array tumor CPT0085630009 202176290147_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e16965db-4c9d-48a2-a55d-e210dff0d141 a1bfb7ba6b16a9c575c8128b0da1eb22 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.MethArray.Red.T C3L-01459 CCRCC Methylation_Array tumor CPT0085630009 202176290147_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b7156ac6-a374-4733-aea6-fd27041db955 6ef422c108c05372251a3f2fcb068649 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.miRNA-Seq.S36_L004_R1.T C3L-01459 CCRCC miRNA-Seq tumor CPT0085630005 181113_UNC31-K00269_0164_AH23NNBBXY_CTTGTA_S36_L004_R1_001.unaln.bam 217477479 BAM S36_L004_R1 submitted_unaligned CPTAC3 2145088f-9eb1-4a4f-a4a2-8d64aeea7b55 4a9db9ec82b67f336138f886d9c4079d {"aliquot_tag": "ALQ_7889069d", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.miRNA-Seq.T.hg38 C3L-01459 CCRCC miRNA-Seq tumor CPT0085630005 a9eb74cd-1353-4747-9c64-7969dbfc41fc_mirnaseq_gdc_realn.bam 236675980 BAM harmonized CPTAC3 4f09e913-c72d-45d6-a480-a471e025c414 093b8abc6b908a04c80974a2062c9ae1 {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.RNA-Seq.chimeric.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.chimeric.gdc_realn.bam 43606472 BAM chimeric harmonized CPTAC3 d0eb822d-f947-4cb5-beeb-c4cf3aef5092 a1e03805af5680719dd4b0826058f329 {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.RNA-Seq.genomic.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.genomic.gdc_realn.bam 8900532806 BAM genomic harmonized CPTAC3 19e9c84d-cf4e-40d5-af9b-0bad3d839402 cee1f2b392f5b40332878509d765e087 {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.RNA-Seq.S19_L005_R1.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R1_001.fastq.gz 4146216879 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 fb9d15da-1e77-4e47-b202-e8240c7b9b60 e56f0368ab9e3e84a30e418a8a7f6b5f {"aliquot_tag": "ALQ_7889069d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.RNA-Seq.S19_L005_R2.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R2_001.fastq.gz 4542324144 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 88270c78-1ebe-4947-9bb6-7ac901ea33f7 0a6834455a345b77ca3ff0fadd33c6dd {"aliquot_tag": "ALQ_7889069d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.RNA-Seq.transcriptome.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.transcriptome.gdc_realn.bam 11331639475 BAM transcriptome harmonized CPTAC3 156226cc-5d9c-42c8-b9cf-91200eeb1f5c 1483439f10b993963a4f96fc098ce1ab {"aliquot_tag": "ALQ_7889069d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.WGS.N C3L-01459 CCRCC WGS blood_normal CPT0086590002 CPT0086590002.WholeGenome.RP-1303.bam 73659720846 BAM submitted_aligned CPTAC3 ae717143-e888-47b6-81c0-8a07380ee8d6 f609f774bbe9a1f1abcfa914966af063 {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01459.WGS.N.hg38 C3L-01459 CCRCC WGS blood_normal CPT0086590002 04b86eab-b41c-4b80-bf4f-ca867afe4c02_gdc_realn.bam 111782579047 BAM harmonized CPTAC3 c36ff144-2cea-4141-91a3-0d71ee37dcb7 c2c1944548d73706260e9aa1c2397dc6 {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01459.WGS.T C3L-01459 CCRCC WGS tumor CPT0085630009 CPT0085630009.WholeGenome.RP-1303.bam 68012162148 BAM submitted_aligned CPTAC3 6a512ea4-a345-416a-8a52-da9501e3c5f0 3c866a13da74b6006700ef71c256bc82 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.WGS.T.hg38 C3L-01459 CCRCC WGS tumor CPT0085630009 a9a00193-10b4-48f5-a3d5-8946a4710f20_gdc_realn.bam 100283837250 BAM harmonized CPTAC3 581ac66f-7cf9-43a7-a2c0-cf7b4be5bce7 979529788083d6fe51de7cd1727f1361 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.WXS.N C3L-01459 CCRCC WXS blood_normal CPT0086590002 CPT0086590002.WholeExome.RP-1303.bam 30507944514 BAM submitted_aligned CPTAC3 21f3fa79-8956-4201-97b8-0b05be0f23b1 fea44b948826408a91987d55f4068a86 {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01459.WXS.N.hg38 C3L-01459 CCRCC WXS blood_normal CPT0086590002 04b86eab-b41c-4b80-bf4f-ca867afe4c02_gdc_realn.bam 42834088251 BAM harmonized CPTAC3 f1c0ee5c-3198-40ad-bedd-2339285e9f34 c36aba45de6fe907da0f28676a0d684e {"aliquot_tag": "ALQ_1b21e3ac", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01459.WXS.T C3L-01459 CCRCC WXS tumor CPT0085630009 CPT0085630009.WholeExome.RP-1303.bam 26350328050 BAM submitted_aligned CPTAC3 9b48648e-5f85-40a9-ae3e-8f348c1bb1ac 80d18681f7d53b6daf6140e12afc3d16 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01459.WXS.T.hg38 C3L-01459 CCRCC WXS tumor CPT0085630009 a9a00193-10b4-48f5-a3d5-8946a4710f20_gdc_realn.bam 36484894246 BAM harmonized CPTAC3 e616a85f-603b-4425-9c79-c8eae5e9a22b 4edcae8a9a19f4d566ef9936d7db8b97 {"aliquot_tag": "ALQ_713f4ab6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01460.MethArray.Green.T C3L-01460 CCRCC Methylation_Array tumor CPT0390250006 205549610122_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 50315ce9-3bd0-41e5-befb-4c66a891d100 f3be2b1d7fa69540b2849b156f27a524 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.MethArray.Red.T C3L-01460 CCRCC Methylation_Array tumor CPT0390250006 205549610122_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 11713cbb-f4fc-4f15-9b1f-1088d7c0e9b6 7abdd1e581c2794c8e25c5c8b46879bc {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.miRNA-Seq.S32_L002_R1.T C3L-01460 CCRCC miRNA-Seq tumor CPT0390250009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAATCG_S32_L002_R1_001.unaln.bam 299349773 BAM S32_L002_R1 submitted_unaligned CPTAC3 d3e59793-3c02-417b-bede-5bb6f94d3964 6660810d0f05557f6b4f8ca89745edc4 {"aliquot_tag": "ALQ_c2f1eefc", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.miRNA-Seq.T.hg38 C3L-01460 CCRCC miRNA-Seq tumor CPT0390250009 bf650281-c3ce-4239-9e5e-1a671946a345_mirnaseq_gdc_realn.bam 323150786 BAM harmonized CPTAC3 00ed8973-b493-431a-9b35-7944f52b0a7e 1997d84f0538b70af9b964e92d8f4cb0 {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.RNA-Seq.chimeric.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.chimeric.gdc_realn.bam 394482866 BAM chimeric harmonized CPTAC3 8af9ba9d-5a1b-4c9c-b214-97692ceb9c6f f5ee6b0cb592ed8ecea6838dc2a69eeb {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.RNA-Seq.genomic.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.genomic.gdc_realn.bam 7593381016 BAM genomic harmonized CPTAC3 a7f0dd8e-d8b9-4133-b59e-1e8f90131834 8c94303235e8e4778590058f73331f67 {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.RNA-Seq.S24_L007_R1.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R1_001.fastq.gz 3574421309 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 fd69960a-6ac1-4877-9eb5-5c2bfcc295a0 0410834c24ab75685e0a64dba91f9f15 {"aliquot_tag": "ALQ_c2f1eefc", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.RNA-Seq.S24_L007_R2.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R2_001.fastq.gz 4062071642 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 725de49b-912a-41fb-8024-5525d5d1d883 fd277bf8d54d829e388d61f3ff56eb1d {"aliquot_tag": "ALQ_c2f1eefc", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.RNA-Seq.transcriptome.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.transcriptome.gdc_realn.bam 10201743660 BAM transcriptome harmonized CPTAC3 ff3aeaaf-4f9a-4ff5-9920-e4f9122f6a9e 0cbe70b599957e8940272bf08550e599 {"aliquot_tag": "ALQ_c2f1eefc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.WGS.N C3L-01460 CCRCC WGS blood_normal CPT0390310002 CPT0390310002.WholeGenome.RP-2158.bam 24866628305 BAM submitted_aligned CPTAC3 5fd5900f-59d8-4c13-a25e-dc6a00adf09f 6aa71a683370cfdc8eee909210c4f83c {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01460.WGS.N.hg38 C3L-01460 CCRCC WGS blood_normal CPT0390310002 795eb542-2268-44b0-b585-6d9d188d430d_wgs_gdc_realn.bam 76972115849 BAM harmonized CPTAC3 e4a6947d-14e6-4e28-b437-abb70a71835a b93d7a7f1bdcd6190d7005c8d2148588 {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01460.WGS.T C3L-01460 CCRCC WGS tumor CPT0390250006 CPT0390250006.WholeGenome.RP-2158.bam 25988028703 BAM submitted_aligned CPTAC3 4026e525-20ac-4da4-b61d-5688fa74e610 ab5dfa3555addf17084f14a11533d013 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.WGS.T.hg38 C3L-01460 CCRCC WGS tumor CPT0390250006 07ff092d-87f8-4b25-8b13-ce34a694f1dc_wgs_gdc_realn.bam 76648042371 BAM harmonized CPTAC3 3449c4f5-4aea-4999-af41-8fb6632cc3da 4023674b1ab3e698f399c9115d9cd4d6 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.WXS.N C3L-01460 CCRCC WXS blood_normal CPT0390310002 CPT0390310002.WholeExome.RP-1303.bam 21608656394 BAM submitted_aligned CPTAC3 7005c8ea-209e-4776-9a8a-d3afaee24caf c3e7e7d3d4aa0dc1a42acf45e895d67e {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01460.WXS.N.hg38 C3L-01460 CCRCC WXS blood_normal CPT0390310002 795eb542-2268-44b0-b585-6d9d188d430d_wxs_gdc_realn.bam 29257405595 BAM harmonized CPTAC3 9e51038c-0b99-44c3-bf6b-8077ae2996e3 1ee12a7f2b89e2e9269940cecc4b6156 {"aliquot_tag": "ALQ_6bff4211", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01460.WXS.T C3L-01460 CCRCC WXS tumor CPT0390250006 CPT0390250006.WholeExome.RP-1303.bam 20315924405 BAM submitted_aligned CPTAC3 b222774c-7c96-489d-8dd4-cd9ba4ad3525 1af05e5cece51ad470e41075094529a8 {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01460.WXS.T.hg38 C3L-01460 CCRCC WXS tumor CPT0390250006 07ff092d-87f8-4b25-8b13-ce34a694f1dc_wxs_gdc_realn.bam 27712423384 BAM harmonized CPTAC3 8ac1990d-7d5a-4ac3-82d3-4ab65566ec40 f6925cfaa7c35b7b0a1291a0684e141a {"aliquot_tag": "ALQ_524ef36d", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01461.MethArray.Green.T C3L-01461 CCRCC Methylation_Array tumor CPT0390120006 205589730117_R02C01_Grn.idat 13677957 IDAT Green NA CPTAC3 0c2a1829-5a6f-4649-b60a-0aa1e5927839 1d18f953419f1d34b516b2b185228ae8 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.MethArray.Red.T C3L-01461 CCRCC Methylation_Array tumor CPT0390120006 205589730117_R02C01_Red.idat 13677957 IDAT Red NA CPTAC3 c6ec4c77-afce-4c28-8f6a-457f84639947 1fd21c75d4a8d160215f16a0112d4708 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.miRNA-Seq.S30_L002_R1.T C3L-01461 CCRCC miRNA-Seq tumor CPT0390120009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTCAGA_S30_L002_R1_001.unaln.bam 323140418 BAM S30_L002_R1 submitted_unaligned CPTAC3 b5ccd7c5-2353-492d-8669-81f8235d80f4 0afbfc217a46b0ed7aadf170e12af736 {"aliquot_tag": "ALQ_f6454042", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.miRNA-Seq.T.hg38 C3L-01461 CCRCC miRNA-Seq tumor CPT0390120009 04c565f1-c871-4aab-9060-222c76b3871e_mirnaseq_gdc_realn.bam 347007377 BAM harmonized CPTAC3 ae0cc7e9-27e4-4d76-844e-bf0fe1f8576b 5229110c9366ebbefb649228d04f8390 {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.RNA-Seq.chimeric.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.chimeric.gdc_realn.bam 188127124 BAM chimeric harmonized CPTAC3 49dc05e7-f122-43a9-a1b0-fff178a8dcaa 4dfe01f39f699f996fe24da362307f2e {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.RNA-Seq.genomic.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.genomic.gdc_realn.bam 10090382210 BAM genomic harmonized CPTAC3 9ce9e638-56b7-4662-ae8a-d7da37a0618d 0af18631488e67cf3c98db4f5e7e0158 {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.RNA-Seq.S26_L008_R1.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R1_001.fastq.gz 4612691095 FASTQ S26_L008_R1 submitted_unaligned CPTAC3 f93d5186-f118-4b95-acc1-cfd33dd98295 caddad3386d9fb3ef80ef4a75e08b214 {"aliquot_tag": "ALQ_f6454042", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.RNA-Seq.S26_L008_R2.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R2_001.fastq.gz 5371389379 FASTQ S26_L008_R2 submitted_unaligned CPTAC3 2f49c25f-4a47-447a-a280-8a7d960a5bcf 7de17d51fd78d0ad7f9774ffaefe8b84 {"aliquot_tag": "ALQ_f6454042", "sample": "S26", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.RNA-Seq.transcriptome.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.transcriptome.gdc_realn.bam 13077757305 BAM transcriptome harmonized CPTAC3 0ba97631-fea9-4dcf-8e63-36e12115f325 3de3bbe0ba018509ec8aebbbdc870622 {"aliquot_tag": "ALQ_f6454042", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.WGS.N C3L-01461 CCRCC WGS blood_normal CPT0390150002 CPT0390150002.WholeGenome.RP-2158.bam 30115048116 BAM submitted_aligned CPTAC3 e1c7c94c-53d8-44b0-8c38-d19133acdef1 dc260b4737642f570dcc6b02b5986ee0 {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01461.WGS.N.hg38 C3L-01461 CCRCC WGS blood_normal CPT0390150002 ca4a04a0-4e64-4d60-9f0f-fabe7756fdb3_wgs_gdc_realn.bam 91707793151 BAM harmonized CPTAC3 81901f2a-f293-4c5f-8af0-b7cd5481e3fe d64cda4e26b7539675a180454ede22c3 {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01461.WGS.T C3L-01461 CCRCC WGS tumor CPT0390120006 CPT0390120006.WholeGenome.RP-2158.bam 42988952501 BAM submitted_aligned CPTAC3 ace67552-c0a4-461b-b2dd-76292ea8106e 031268e0fff39cb79559cc8c12bc661e {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.WGS.T.hg38 C3L-01461 CCRCC WGS tumor CPT0390120006 87d7bb11-a9d2-4421-a8e2-b24966d25ab4_wgs_gdc_realn.bam 130083406218 BAM harmonized CPTAC3 b62cd747-c117-4728-9504-c239b9ad49a6 67d097707dd27fb6039369c49d88eeb0 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.WXS.N C3L-01461 CCRCC WXS blood_normal CPT0390150002 CPT0390150002.WholeExome.RP-1303.bam 25972597012 BAM submitted_aligned CPTAC3 9278484e-fb6d-4052-92db-f24e81006b60 27cea09266734ef84ea52dfefe3b2da9 {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01461.WXS.N.hg38 C3L-01461 CCRCC WXS blood_normal CPT0390150002 ca4a04a0-4e64-4d60-9f0f-fabe7756fdb3_wxs_gdc_realn.bam 35581755690 BAM harmonized CPTAC3 6ac8eeed-0fc0-438f-938f-8aa959f533e1 8b4080205a7b59718b243e4dd65a494e {"aliquot_tag": "ALQ_d3b745da", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01461.WXS.T C3L-01461 CCRCC WXS tumor CPT0390120006 CPT0390120006.WholeExome.RP-1303.bam 21162930423 BAM submitted_aligned CPTAC3 a7d725aa-e38c-4a1d-8d41-c775536d2bdb 581b585c59fed6303151a56a43a84cd7 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01461.WXS.T.hg38 C3L-01461 CCRCC WXS tumor CPT0390120006 87d7bb11-a9d2-4421-a8e2-b24966d25ab4_wxs_gdc_realn.bam 28989072068 BAM harmonized CPTAC3 ebfcdeac-d093-4b09-b47e-9992e39ad0ed 318ffe92222f6efd7bea957588fc5d49 {"aliquot_tag": "ALQ_66fa5dd3", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01462.MethArray.Green.A C3L-01462 CCRCC Methylation_Array tissue_normal CPT0085920006 204930630034_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 77caa79b-e7f4-4c19-a8b3-e3cec28174ee ad220b46c3ef53f43223bab61adb4756 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.MethArray.Green.T C3L-01462 CCRCC Methylation_Array tumor CPT0085910009 202184900148_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 e04f2328-d8bf-4103-9b38-491f148cd18f dc00292cd2cb7c11483bb5a0dd15d78a {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.MethArray.Red.A C3L-01462 CCRCC Methylation_Array tissue_normal CPT0085920006 204930630034_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 182f8593-f748-494b-a8f3-0016fc827473 21f911e892257abef91c3315be18a030 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.MethArray.Red.T C3L-01462 CCRCC Methylation_Array tumor CPT0085910009 202184900148_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 095cc1db-7c1b-4bfe-b663-3c5f51b2e37c 700a3d923a2933caaa912ae5fdb918cb {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.miRNA-Seq.A.hg38 C3L-01462 CCRCC miRNA-Seq tissue_normal CPT0085920009 91f2cf9c-a3bd-4cb0-816d-9bc85db47e5f_mirnaseq_gdc_realn.bam 290454430 BAM harmonized CPTAC3 1ac44bc3-897a-47c6-8883-b374d35763ee 9a6e55266cc9a52ff31b340a25299557 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.miRNA-Seq.S31_L002_R1.A C3L-01462 CCRCC miRNA-Seq tissue_normal CPT0085920009 181119_UNC31-K00269_0165_AH27WCBBXY_CAGATC_S31_L002_R1_001.unaln.bam 261713975 BAM S31_L002_R1 submitted_unaligned CPTAC3 e15c8f50-e1d0-4f5a-8f10-3018e4f2f12a cba4c56412e2ec24bb7c8a8bead56df6 {"aliquot_tag": "ALQ_bd09d1d3", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.miRNA-Seq.S7_L008_R1.T C3L-01462 CCRCC miRNA-Seq tumor CPT0085910006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L008_R1_001.unaln.bam 208347610 BAM S7_L008_R1 submitted_unaligned CPTAC3 001169ab-0092-4b70-9b28-219ccbf41e91 153d9b28e255c5bf369f78a9d811e46c {"aliquot_tag": "ALQ_6a16b692", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.miRNA-Seq.T.hg38 C3L-01462 CCRCC miRNA-Seq tumor CPT0085910006 50c13503-4e56-4ddb-86ac-9e08bbbe7601_mirnaseq_gdc_realn.bam 232216587 BAM harmonized CPTAC3 020eca9b-f121-42c5-ba31-e19dd7aa7124 bae759fb572165d8588ff16a63bc3ee8 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.RNA-Seq.chimeric.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.chimeric.gdc_realn.bam 32018835 BAM chimeric harmonized CPTAC3 9a49be90-675c-4a89-8b9d-018164974e71 7ced1d268b45d884286d330c1abe2a78 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.RNA-Seq.chimeric.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.chimeric.gdc_realn.bam 29178606 BAM chimeric harmonized CPTAC3 5a371033-9b4b-4cd7-a1dc-e172cbe95b30 805f3d3befb1a342ad43a389c6fe6341 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.RNA-Seq.genomic.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.genomic.gdc_realn.bam 8584848822 BAM genomic harmonized CPTAC3 65566e6e-c747-44a7-9843-5f802ff1415a 43bef0cf0c9e38c49721d7500ffbb613 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.RNA-Seq.genomic.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.genomic.gdc_realn.bam 6151467388 BAM genomic harmonized CPTAC3 f32a6c26-c4df-4a9a-b9e5-4c4b256ea7c6 35c3221afb3ceb79543b75647fad7f83 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.RNA-Seq.S3_L001_R1.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3212761487 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 a8022275-c8f1-46ed-be4f-0421566af10f 177782413bda1c5604a4098108537834 {"aliquot_tag": "ALQ_6a16b692", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.RNA-Seq.S3_L001_R2.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3534510896 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 ee816a7e-c352-4b0c-9def-97ee54d8a321 8bc16895ad6f44d6543493fb120f0010 {"aliquot_tag": "ALQ_6a16b692", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.RNA-Seq.S8_L002_R1.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R1_001.fastq.gz 3861104781 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 f5114053-a779-46ef-a9b4-a54f9bd0e2cf 8163b7292ea6d408e4c2a8e8b0e54dc7 {"aliquot_tag": "ALQ_bd09d1d3", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.RNA-Seq.S8_L002_R2.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R2_001.fastq.gz 4324001669 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 bce94f76-62a9-470e-80b7-d4dec77a27ac fa5e5b97e34b7c7d229f4487a450163c {"aliquot_tag": "ALQ_bd09d1d3", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.RNA-Seq.transcriptome.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.transcriptome.gdc_realn.bam 10778072042 BAM transcriptome harmonized CPTAC3 26faa851-47dc-4857-bf2f-e7816c70a5d8 1af46bbe4bf146f71d540fae0d65a184 {"aliquot_tag": "ALQ_bd09d1d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.RNA-Seq.transcriptome.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.transcriptome.gdc_realn.bam 8608448961 BAM transcriptome harmonized CPTAC3 56f2e984-4a86-481a-90dd-00de2aafb5dd 4a29b7492ed2ef1b7f8ad6621fe514b0 {"aliquot_tag": "ALQ_6a16b692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.WGS.A C3L-01462 CCRCC WGS tissue_normal CPT0085920006 CPT0085920006.WholeGenome.RP-1303.bam 68955077857 BAM submitted_aligned CPTAC3 8a8dae8d-e22b-42e3-9eef-e642fbd64da0 fa0d417303c1c93ca71a1172a26b8c3d {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.WGS.A.hg38 C3L-01462 CCRCC WGS tissue_normal CPT0085920006 cf413cfe-d871-4dc4-88b0-42d82a1aaea2_wgs_gdc_realn.bam 100860850101 BAM harmonized CPTAC3 0a54d990-6fe2-40ca-afc2-5df1c3f8ef65 268c9de26d10e2fb46bfcc6412c2b9c9 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.WGS.N C3L-01462 CCRCC WGS blood_normal CPT0086690002 CPT0086690002.WholeGenome.RP-1303.bam 69593254605 BAM submitted_aligned CPTAC3 f7012e04-e836-4f8f-8f8b-8e625c7a3331 53d8019f77d502049b255ab1b007dbbe {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01462.WGS.N.hg38 C3L-01462 CCRCC WGS blood_normal CPT0086690002 8a49d5b0-ba51-492e-bb4f-5d26926217f3_gdc_realn.bam 104255210494 BAM harmonized CPTAC3 65cadd28-f668-4c01-8622-fac85370f41d dcb7890feb4ada2cee595d7df686c555 {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01462.WGS.T C3L-01462 CCRCC WGS tumor CPT0085910009 CPT0085910009.WholeGenome.RP-1303.bam 73983297871 BAM submitted_aligned CPTAC3 5917bc67-3b68-424e-a470-2205b6b71384 b8342b1f20284fe0f29b4a88bc1dda1e {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.WGS.T.hg38 C3L-01462 CCRCC WGS tumor CPT0085910009 79218677-07e3-4468-8147-7a555f00fc8e_gdc_realn.bam 111479512745 BAM harmonized CPTAC3 7c6f34ad-430e-4948-961d-3f9154ae7c98 2b66e184b24e70b0d1511d17f51a2f67 {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.WXS.A C3L-01462 CCRCC WXS tissue_normal CPT0085920006 CPT0085920006.WholeExome.RP-1303.bam 23991825061 BAM submitted_aligned CPTAC3 620b92cd-5f59-42f7-afd7-4f1ad62a0632 c9285fbf8414af53892d7c32a39b4bc6 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.WXS.A.hg38 C3L-01462 CCRCC WXS tissue_normal CPT0085920006 cf413cfe-d871-4dc4-88b0-42d82a1aaea2_wxs_gdc_realn.bam 31928088018 BAM harmonized CPTAC3 c2fd77e1-8e9f-4f08-bf9f-25dfa3bedf70 6f32b723a8d7e28a0a9d16838755ec98 {"aliquot_tag": "ALQ_2db6cc42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01462.WXS.N C3L-01462 CCRCC WXS blood_normal CPT0086690002 CPT0086690002.WholeExome.RP-1303.bam 40435515133 BAM submitted_aligned CPTAC3 003f303d-be5a-4cf1-baaf-a48b4e3e208c 22ab71ba121570ff9ca68c6bbb04a09d {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01462.WXS.N.hg38 C3L-01462 CCRCC WXS blood_normal CPT0086690002 8a49d5b0-ba51-492e-bb4f-5d26926217f3_gdc_realn.bam 56231659746 BAM harmonized CPTAC3 5ee3189f-c623-453e-847f-57a172e4c994 6c8c433b2de0cbd10153a8858c372277 {"aliquot_tag": "ALQ_9db59102", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01462.WXS.T C3L-01462 CCRCC WXS tumor CPT0085910009 CPT0085910009.WholeExome.RP-1303.bam 28150974593 BAM submitted_aligned CPTAC3 a0105491-3dd6-45a2-ad59-8ea93499c09b d5580c70855701f055414cc75f4d4dc7 {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01462.WXS.T.hg38 C3L-01462 CCRCC WXS tumor CPT0085910009 79218677-07e3-4468-8147-7a555f00fc8e_gdc_realn.bam 38436778496 BAM harmonized CPTAC3 0a25364d-3b29-4bbe-b6ba-d97a2fac610a 575ee1f4c465ec7231ef7aacec1eb76b {"aliquot_tag": "ALQ_faa9ab03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01463.MethArray.Green.T C3L-01463 CCRCC Methylation_Array tumor CPT0389910006 205549600088_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b89cfdb8-5bb9-4a31-ab36-09a56f0d2185 b89f410f18317746fe8202e8c702ef17 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.MethArray.Red.T C3L-01463 CCRCC Methylation_Array tumor CPT0389910006 205549600088_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 07f2f382-60ae-4850-90c0-0bc3cb2ee998 d2f05630cbe1b662041742aee07d7e17 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.miRNA-Seq.S24_L002_R1.T C3L-01463 CCRCC miRNA-Seq tumor CPT0389910009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CATGGC_S24_L002_R1_001.unaln.bam 227444146 BAM S24_L002_R1 submitted_unaligned CPTAC3 6f165cb3-c803-4a07-b597-e81c7496198d 060495a5b26a32ae00dc8004b920b00c {"aliquot_tag": "ALQ_484fdb2", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.miRNA-Seq.T.hg38 C3L-01463 CCRCC miRNA-Seq tumor CPT0389910009 3ed4f5fa-2dc6-42b3-afbf-c5b57dcb36f8_mirnaseq_gdc_realn.bam 242281242 BAM harmonized CPTAC3 727f5038-9b36-4715-80f2-659cb3bf5a45 54785c9329c1ebdd0c70f8b9377ca10a {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.RNA-Seq.chimeric.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.chimeric.gdc_realn.bam 449451682 BAM chimeric harmonized CPTAC3 e2f2ea20-20cc-46f3-ad56-fe9bbde310e7 6f6598bb541d07523b245afbd80b58ac {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.RNA-Seq.genomic.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.genomic.gdc_realn.bam 8487329424 BAM genomic harmonized CPTAC3 1c432eb1-b099-4d18-adc7-d41f71ee2726 2df6d79ee9459daa2b6096c54099c1ec {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.RNA-Seq.S2_L001_R1.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 3991979989 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 5a7080ad-235d-4cec-9d79-7730f6d35e84 c532d4fcd52808ed04dba0149612d9a3 {"aliquot_tag": "ALQ_484fdb2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.RNA-Seq.S2_L001_R2.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 4584028673 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 cd19d919-00ce-4cf7-b2a5-6e277a4f9cf4 60ae278e23693155793b7df348a41d6f {"aliquot_tag": "ALQ_484fdb2", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.RNA-Seq.transcriptome.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.transcriptome.gdc_realn.bam 10771862448 BAM transcriptome harmonized CPTAC3 bc2218e0-aeb9-4ea5-89c5-c49384c13720 945368986449e5e0a791f9de724b5d05 {"aliquot_tag": "ALQ_484fdb2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.WGS.N C3L-01463 CCRCC WGS blood_normal CPT0389940002 CPT0389940002.WholeGenome.RP-2158.bam 30188703362 BAM submitted_aligned CPTAC3 f395b1b2-c45a-486c-9309-52a2fd623ac2 2494f9d0212978537f2bb5f7355d5e2f {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01463.WGS.N.hg38 C3L-01463 CCRCC WGS blood_normal CPT0389940002 a658bf66-1d71-4145-a226-364cde057592_wgs_gdc_realn.bam 91947223451 BAM harmonized CPTAC3 3e46fc89-f1a6-4e5b-90dc-3487fa9b40f3 53096321d158dde60c5e2795a7b17c7e {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01463.WGS.T C3L-01463 CCRCC WGS tumor CPT0389910006 CPT0389910006.WholeGenome.RP-2158.bam 21643399483 BAM submitted_aligned CPTAC3 fec7d88b-4a6d-466a-9a84-7d6a97d34807 7c901270d365478fc6a1c9f870c28097 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.WGS.T.hg38 C3L-01463 CCRCC WGS tumor CPT0389910006 674f292d-e5a4-496b-a718-fe8222badafd_wgs_gdc_realn.bam 63744696691 BAM harmonized CPTAC3 e3c08d48-d181-46c3-88ae-970a53c6f6a2 281f83f87e952b96c06141dbb4bbecda {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.WXS.N C3L-01463 CCRCC WXS blood_normal CPT0389940002 CPT0389940002.WholeExome.RP-1303.bam 18832180161 BAM submitted_aligned CPTAC3 4d32b567-30fb-45f3-8d06-76f6cd300676 2df5914122f3d2c1d6c391dc36631501 {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01463.WXS.N.hg38 C3L-01463 CCRCC WXS blood_normal CPT0389940002 a658bf66-1d71-4145-a226-364cde057592_wxs_gdc_realn.bam 25094190269 BAM harmonized CPTAC3 ddd80cbe-d39c-4d63-9629-1fb886973d52 eaefd5f012f6914bbfc099b06d09b6f1 {"aliquot_tag": "ALQ_5bb6ab4a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01463.WXS.T C3L-01463 CCRCC WXS tumor CPT0389910006 CPT0389910006.WholeExome.RP-1303.bam 22575329255 BAM submitted_aligned CPTAC3 317cb7a9-baad-4356-b010-6a0f60681b1e 039873a0ab4df61bee7c98a121b790dd {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01463.WXS.T.hg38 C3L-01463 CCRCC WXS tumor CPT0389910006 674f292d-e5a4-496b-a718-fe8222badafd_wxs_gdc_realn.bam 31008234112 BAM harmonized CPTAC3 6c410b50-bd62-41df-a431-3cc93e1c54d1 678fc0c13d224755cc5e832e06df6588 {"aliquot_tag": "ALQ_943be023", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01464.MethArray.Green.T C3L-01464 CCRCC Methylation_Array tumor CPT0085850009 202163530118_R03C01_Grn.idat 13676245 IDAT Green NA CPTAC3 6a30ccdd-b358-401e-8434-9a2635db0895 05973bab435b65e288c1be58e3539107 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.MethArray.Red.T C3L-01464 CCRCC Methylation_Array tumor CPT0085850009 202163530118_R03C01_Red.idat 13676245 IDAT Red NA CPTAC3 8a0829ca-169d-4602-a872-dc9163603b10 54492d5eef16629d7b2c71db73cd8395 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.miRNA-Seq.A.hg38 C3L-01464 CCRCC miRNA-Seq tissue_normal CPT0085860009 4bb5590a-11d4-4184-992a-f7358df31986_mirnaseq_gdc_realn.bam 280270146 BAM harmonized CPTAC3 04ed47e2-0ed4-4788-98c6-ffa575e82eb8 337c974285f746422a7348a300916b3c {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01464.miRNA-Seq.S30_L002_R1.A C3L-01464 CCRCC miRNA-Seq tissue_normal CPT0085860009 181119_UNC31-K00269_0165_AH27WCBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 251560244 BAM S30_L002_R1 submitted_unaligned CPTAC3 2952d094-7bfc-44a9-843a-93a06f18be45 c4e6fa35f96b131a4a1f218fbb06f7af {"aliquot_tag": "ALQ_83d5a4b6", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01464.miRNA-Seq.S6_L008_R1.T C3L-01464 CCRCC miRNA-Seq tumor CPT0085850006 181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L008_R1_001.unaln.bam 204616261 BAM S6_L008_R1 submitted_unaligned CPTAC3 c8a88f19-1333-43ef-970d-ae2cf4c324af ae9aa70cde39bad74a0bfacc4eda42d0 {"aliquot_tag": "ALQ_54cac3f7", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.miRNA-Seq.T.hg38 C3L-01464 CCRCC miRNA-Seq tumor CPT0085850006 597bbb20-01b4-482a-b1a0-446ca8aaf441_mirnaseq_gdc_realn.bam 228665363 BAM harmonized CPTAC3 22c178be-157b-483b-82c5-ba9057260b5f b0907e4b9a15d9222e4d95eb468f918e {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.RNA-Seq.chimeric.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.chimeric.gdc_realn.bam 35607866 BAM chimeric harmonized CPTAC3 e46ec14b-a29b-465e-b113-1dc9ad869817 b60395d998ecca159bf43345abc680f7 {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01464.RNA-Seq.chimeric.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.chimeric.gdc_realn.bam 31387972 BAM chimeric harmonized CPTAC3 42035def-b36f-4fe8-ae71-54c4ca518073 4478167703a3aa71afbd25ad96ba92f3 {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.RNA-Seq.genomic.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.genomic.gdc_realn.bam 9471288364 BAM genomic harmonized CPTAC3 ddaabd09-7a70-4dfd-9473-632f02a80b4a 3ba156da07543eaef456a92c93086b9d {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01464.RNA-Seq.genomic.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.genomic.gdc_realn.bam 6769503083 BAM genomic harmonized CPTAC3 0c417f46-e5bd-4143-8cc9-828ffdb579f0 96bb51540b9e0bb9dee3958887943a2f {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.RNA-Seq.S6_L002_R1.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4352087275 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 fb0e7125-51da-4ad9-b07e-35cc204246d5 246fa6a4d862128dc9b4ab749a7495c7 {"aliquot_tag": "ALQ_83d5a4b6", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01464.RNA-Seq.S6_L002_R2.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R2_001.fastq.gz 4861027895 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 9c383d87-d079-4963-aa4a-a0780b26f958 365c007f927af570e223f0e31df1541e {"aliquot_tag": "ALQ_83d5a4b6", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01464.RNA-Seq.S7_L002_R1.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R1_001.fastq.gz 3433675698 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 9a39a5e4-189c-4f57-9095-2966a3eeb2ac 920386420aea91898d9aecab8637f4a2 {"aliquot_tag": "ALQ_54cac3f7", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.RNA-Seq.S7_L002_R2.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R2_001.fastq.gz 3793634944 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 267a5494-aa7e-40ba-9351-7ae0b2f86e48 cc4c51fa08288c4102fda5cc6e1abc7e {"aliquot_tag": "ALQ_54cac3f7", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.RNA-Seq.transcriptome.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.transcriptome.gdc_realn.bam 12179713533 BAM transcriptome harmonized CPTAC3 3f24d2df-e08e-4788-bf91-2f7949c69d0f 786e14af98bdc9247f02adc1d1d6913f {"aliquot_tag": "ALQ_83d5a4b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01464.RNA-Seq.transcriptome.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.transcriptome.gdc_realn.bam 10135239972 BAM transcriptome harmonized CPTAC3 6fe1e177-70d2-478a-8951-5d55bc8a4d3e e928a515ebaca6ee6dc9fbe51f84d1ff {"aliquot_tag": "ALQ_54cac3f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.WGS.N C3L-01464 CCRCC WGS blood_normal CPT0086670002 CPT0086670002.WholeGenome.RP-1303.bam 72187580351 BAM submitted_aligned CPTAC3 5698916f-6992-45ef-ab48-6d2e39126e7c 0903aeccb08d1042c3095ed9b4d0b521 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01464.WGS.N.hg38 C3L-01464 CCRCC WGS blood_normal CPT0086670002 49943e71-0b50-4e83-9188-24c2276c82b0_gdc_realn.bam 109870889316 BAM harmonized CPTAC3 1498828b-94e0-4ffe-a58b-e9dca8fedeb2 9c758c23f9a92ba1c053b598797f7d39 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01464.WGS.T C3L-01464 CCRCC WGS tumor CPT0085850009 CPT0085850009.WholeGenome.RP-1303.bam 63899222677 BAM submitted_aligned CPTAC3 bdd2519e-8447-48f1-a4ff-ee9630f1667b 43504571019d6469d834bfc101dfd5bb {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.WGS.T.hg38 C3L-01464 CCRCC WGS tumor CPT0085850009 cc24601c-c3d5-4ce5-8761-bbbf4af8b9b6_gdc_realn.bam 94774680054 BAM harmonized CPTAC3 25480987-1cb0-47b2-81cc-360d8843d0a2 4b9c84d7a67701211cc302c68b4c8cb2 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.WXS.N C3L-01464 CCRCC WXS blood_normal CPT0086670002 CPT0086670002.WholeExome.RP-1303.bam 31040762627 BAM submitted_aligned CPTAC3 e56134ec-afd3-4209-a299-3204df0d8815 2c69ae4a9b16a42b74fb3bde0c148575 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01464.WXS.N.hg38 C3L-01464 CCRCC WXS blood_normal CPT0086670002 49943e71-0b50-4e83-9188-24c2276c82b0_gdc_realn.bam 42456022187 BAM harmonized CPTAC3 6ddcc35d-1398-42a2-8fcf-299f838a4993 6e9e83803de3ec1de601ba8e54cb35f3 {"aliquot_tag": "ALQ_22852f63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01464.WXS.T C3L-01464 CCRCC WXS tumor CPT0085850009 CPT0085850009.WholeExome.RP-1303.bam 22249812023 BAM submitted_aligned CPTAC3 7330ac90-2950-4612-b197-11b4b29c7dc0 75ffab4114892ce175bc2fd9eb00aa0f {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01464.WXS.T.hg38 C3L-01464 CCRCC WXS tumor CPT0085850009 cc24601c-c3d5-4ce5-8761-bbbf4af8b9b6_gdc_realn.bam 30883548830 BAM harmonized CPTAC3 b7cab8fb-fdf3-4710-98df-98774bb11ef3 b1efa208ad9e46fc69c18cbc192304c9 {"aliquot_tag": "ALQ_c475de66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.MethArray.Green.T C3L-01465 CCRCC Methylation_Array tumor CPT0085790009 202176290116_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d4e46b04-9963-4f43-90a6-a2ce448c283b 7db39fc9941e93544f640e9b825597e5 {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.MethArray.Red.T C3L-01465 CCRCC Methylation_Array tumor CPT0085790009 202176290116_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 c61aa502-afbd-4b56-8551-7d111fa71a46 0c47fed04c6eaef3c9feb61d0accf61c {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.miRNA-Seq.S5_L008_R1.T C3L-01465 CCRCC miRNA-Seq tumor CPT0085790006 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L008_R1_001.unaln.bam 166602306 BAM S5_L008_R1 submitted_unaligned CPTAC3 719561e5-8f90-44d4-bed1-9a1e6450a960 ee839f188cf5731c2ae257942f70bce7 {"aliquot_tag": "ALQ_606c9c23", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.miRNA-Seq.T.hg38 C3L-01465 CCRCC miRNA-Seq tumor CPT0085790006 b25d4c2b-2259-4c39-a55e-960823f1b8b2_mirnaseq_gdc_realn.bam 181743265 BAM harmonized CPTAC3 8ab15484-5389-4724-966a-b6f8e84668b7 22e10ab921428ef517c19bd23ee0c7bb {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.RNA-Seq.chimeric.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.chimeric.gdc_realn.bam 30447079 BAM chimeric harmonized CPTAC3 d8c7e438-1547-49a7-9f49-f342855f2748 ea9098762fa0f99b811d7c66fac900d2 {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.RNA-Seq.genomic.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.genomic.gdc_realn.bam 7109623545 BAM genomic harmonized CPTAC3 e504fd4f-7542-498a-aa49-be26c2f7a243 46e7d5ccc475806174c0b5b9ab481ece {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.RNA-Seq.S8_L002_R1.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R1_001.fastq.gz 3582870850 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 157eba3a-9261-4bc0-a5b6-778d0ef4015a 9419e25aaff5db7a3323ea91e9abee05 {"aliquot_tag": "ALQ_606c9c23", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.RNA-Seq.S8_L002_R2.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R2_001.fastq.gz 3964297654 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 a125db0a-87a5-4799-b24e-87cd8a248114 e697eb5b3064587f3d8002686f712e14 {"aliquot_tag": "ALQ_606c9c23", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.RNA-Seq.transcriptome.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.transcriptome.gdc_realn.bam 9958219909 BAM transcriptome harmonized CPTAC3 42b91cac-15ad-4391-88d9-046808b23dfe 24dcf36b20961c423a79d234c8afecef {"aliquot_tag": "ALQ_606c9c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.WGS.N C3L-01465 CCRCC WGS blood_normal CPT0086650002 CPT0086650002.WholeGenome.RP-1303.bam 71131354301 BAM submitted_aligned CPTAC3 b05dd77d-34ae-4616-a386-57e1ba2a9849 8ab3463e3a9c15795f5cfa55060776ec {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01465.WGS.N.hg38 C3L-01465 CCRCC WGS blood_normal CPT0086650002 7637521b-2766-41f0-a52a-ee21470742f8_gdc_realn.bam 107003199874 BAM harmonized CPTAC3 93b7d297-0402-49c4-9e9b-7d042bdf0835 734e53083a85c091640be007641ce3fe {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01465.WGS.T C3L-01465 CCRCC WGS tumor CPT0085790009 CPT0085790009.WholeGenome.RP-1303.bam 60889121893 BAM submitted_aligned CPTAC3 b7549863-fad3-4bcb-b025-5fbd91bbee87 9a4a60a8f9dabefbf88af51b678aba4c {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.WGS.T.hg38 C3L-01465 CCRCC WGS tumor CPT0085790009 f6aa2c77-2e64-4f87-ad54-445898578c3b_gdc_realn.bam 91795040015 BAM harmonized CPTAC3 1199eab5-2c3c-4ba9-9bc2-7a304a1020c4 fa787b999894251f43628436615bc74e {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.WXS.N C3L-01465 CCRCC WXS blood_normal CPT0086650002 CPT0086650002.WholeExome.RP-1303.bam 31326233183 BAM submitted_aligned CPTAC3 83202203-bade-4b94-845c-102741af1cd1 8dae158f62659f60f2c265b73336eb71 {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01465.WXS.N.hg38 C3L-01465 CCRCC WXS blood_normal CPT0086650002 7637521b-2766-41f0-a52a-ee21470742f8_gdc_realn.bam 42728680230 BAM harmonized CPTAC3 3292c635-792d-4fed-98a0-427b642aa691 b0d701ed1f0ad3847d9837d0887569ca {"aliquot_tag": "ALQ_58457c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01465.WXS.T C3L-01465 CCRCC WXS tumor CPT0085790009 CPT0085790009.WholeExome.RP-1303.bam 33766499675 BAM submitted_aligned CPTAC3 316b019b-b9ad-4134-bf68-882625f2489f 3a5601a245f958d97885df731762eda2 {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01465.WXS.T.hg38 C3L-01465 CCRCC WXS tumor CPT0085790009 f6aa2c77-2e64-4f87-ad54-445898578c3b_gdc_realn.bam 45861128809 BAM harmonized CPTAC3 4d8cf70f-c721-4a29-a9de-175fb4691bdc f18321a5675ed5355c81a997694bb7fc {"aliquot_tag": "ALQ_f0d381b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01467.MethArray.Green.T C3L-01467 CCRCC Methylation_Array tumor CPT0390040006 205589730117_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 cee054dc-22c5-41be-aa4a-4b2266a62eb2 eebc1f37fd69a72e93e543751f285d8a {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.MethArray.Red.T C3L-01467 CCRCC Methylation_Array tumor CPT0390040006 205589730117_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 26e14475-786f-4fe8-86a8-53d77b48c786 45a1732cc60399a9f5c63823a1b5c1ba {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.miRNA-Seq.A.hg38 C3L-01467 CCRCC miRNA-Seq tissue_normal CPT0390050005 0fdb2983-e3c7-45fe-b73b-b536aa47b225_mirnaseq_gdc_realn.bam 315260295 BAM harmonized CPTAC3 b8fe47f6-872a-40e0-937d-d37b2e71d22c fc48ee52509f428d13fe5578896250b5 {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01467.miRNA-Seq.S26_L002_R1.T C3L-01467 CCRCC miRNA-Seq tumor CPT0390040009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CCAACA_S26_L002_R1_001.unaln.bam 195288244 BAM S26_L002_R1 submitted_unaligned CPTAC3 6341bdc9-d815-46e0-96a5-c63b4525a4d2 2951c8d6598ad68b5061137b6311980b {"aliquot_tag": "ALQ_b2596647", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.miRNA-Seq.S28_L002_R1.A C3L-01467 CCRCC miRNA-Seq tissue_normal CPT0390050005 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTAGCT_S28_L002_R1_001.unaln.bam 287738370 BAM S28_L002_R1 submitted_unaligned CPTAC3 f302e14a-4a54-4614-a19f-ef8a560754a9 cf57c250492fd11e74c452744416a570 {"aliquot_tag": "ALQ_868f03dc", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01467.miRNA-Seq.T.hg38 C3L-01467 CCRCC miRNA-Seq tumor CPT0390040009 e3ef9cf7-a65f-4135-b87f-c23e9de7698d_mirnaseq_gdc_realn.bam 208245230 BAM harmonized CPTAC3 2b4f0c0c-3265-4cd2-98c4-a02a748d1bc3 541886a29903f1c24be8a004d35f2a18 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.RNA-Seq.chimeric.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.chimeric.gdc_realn.bam 142207145 BAM chimeric harmonized CPTAC3 3821acbb-c54d-4c11-9d94-9055b9c565fa 3c252fdfac499a96e513b92d5a3f6ff9 {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01467.RNA-Seq.chimeric.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.chimeric.gdc_realn.bam 276061689 BAM chimeric harmonized CPTAC3 bbdcb953-4bb0-419b-b279-1ca4b5fa6ff5 9a6ed9527dcb1f68cf0d6edc34bc9635 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.RNA-Seq.genomic.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.genomic.gdc_realn.bam 7854810328 BAM genomic harmonized CPTAC3 90c2c56b-8957-4d56-9a5a-1bfdb058b22f 19ed9cb10f031dfb4dc7f08ed1874d10 {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01467.RNA-Seq.genomic.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.genomic.gdc_realn.bam 6322300556 BAM genomic harmonized CPTAC3 ef8ce927-5591-495f-96be-0d71f0e89af3 f2e07ad85499701761453b99df544f15 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.RNA-Seq.S27_L008_R1.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R1_001.fastq.gz 3268952339 FASTQ S27_L008_R1 submitted_unaligned CPTAC3 3a0120b5-e773-43d4-8328-608c5be239f3 50805782a013a9cdf71598097f8d2249 {"aliquot_tag": "ALQ_868f03dc", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01467.RNA-Seq.S27_L008_R2.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R2_001.fastq.gz 3821259301 FASTQ S27_L008_R2 submitted_unaligned CPTAC3 b852f3ee-407f-4d93-b0a5-c9f0ab8ad7a9 870353d5da9bf80fd527b3e13da89bf9 {"aliquot_tag": "ALQ_868f03dc", "sample": "S27", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01467.RNA-Seq.S3_L001_R1.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R1_001.fastq.gz 3034562105 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 57e34763-07a5-43f4-ba53-dade7666af99 970d0cb99b1e5acae1cee63791ad4bd0 {"aliquot_tag": "ALQ_b2596647", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.RNA-Seq.S3_L001_R2.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R2_001.fastq.gz 3413737915 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 7c5f4de5-8492-4b48-a285-86cfb5ec1c64 eed8622986b7cfa85b023bf933123d22 {"aliquot_tag": "ALQ_b2596647", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.RNA-Seq.transcriptome.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.transcriptome.gdc_realn.bam 8552369332 BAM transcriptome harmonized CPTAC3 7be9299c-dbf9-4fac-b5c4-81ec131df495 3bf1cedad1c6436fd56df023a178cbab {"aliquot_tag": "ALQ_868f03dc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01467.RNA-Seq.transcriptome.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.transcriptome.gdc_realn.bam 7995471615 BAM transcriptome harmonized CPTAC3 2fbf54da-25fd-4837-a8eb-7445e012113b 3c0789dce8f71e1d18468e0446aede21 {"aliquot_tag": "ALQ_b2596647", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.WGS.N C3L-01467 CCRCC WGS blood_normal CPT0390100002 CPT0390100002.WholeGenome.RP-2158.bam 23990076711 BAM submitted_aligned CPTAC3 8c86baec-7920-4697-93ea-433329756c00 420bbee15032655281670e7b1e71dcc9 {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01467.WGS.N.hg38 C3L-01467 CCRCC WGS blood_normal CPT0390100002 ef088a03-f3d5-4820-bc88-4836e07d98a4_wgs_gdc_realn.bam 73997069577 BAM harmonized CPTAC3 67827a64-47cf-4d3b-9c40-848baac6bce7 4c6cb4b7a61d691fc13ae8c3cbeb7d8b {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01467.WGS.T C3L-01467 CCRCC WGS tumor CPT0390040006 CPT0390040006.WholeGenome.RP-2158.bam 23708116710 BAM submitted_aligned CPTAC3 9f6cbe45-54a8-4b89-b4e7-f56634aff1a3 f4b1d1f59265922dfa5004373931e9f1 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.WGS.T.hg38 C3L-01467 CCRCC WGS tumor CPT0390040006 cd6dcb7c-3bbc-4839-b740-6189d822de00_wgs_gdc_realn.bam 71659386497 BAM harmonized CPTAC3 545b486f-acb4-40d2-b216-07c65845d02f 319b61265d3e7af797e950c2375ad7e4 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.WXS.N C3L-01467 CCRCC WXS blood_normal CPT0390100002 CPT0390100002.WholeExome.RP-1303.bam 21727867412 BAM submitted_aligned CPTAC3 168984e7-8ec0-4e6e-a1f2-00f1a3200fc8 452346678719cd1044a190d91f5d50f4 {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01467.WXS.N.hg38 C3L-01467 CCRCC WXS blood_normal CPT0390100002 ef088a03-f3d5-4820-bc88-4836e07d98a4_wxs_gdc_realn.bam 29908468127 BAM harmonized CPTAC3 face21d7-0412-46e2-92aa-e635885fb1ea 8c2fa6f0f05cc771043389266f72be94 {"aliquot_tag": "ALQ_1b57caaa", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01467.WXS.T C3L-01467 CCRCC WXS tumor CPT0390040006 CPT0390040006.WholeExome.RP-1303.bam 20389902793 BAM submitted_aligned CPTAC3 4db07585-1cef-40aa-bfd5-6874be906d0d 3f99d47db5a8917b7a7c39fbcfd7cc45 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01467.WXS.T.hg38 C3L-01467 CCRCC WXS tumor CPT0390040006 cd6dcb7c-3bbc-4839-b740-6189d822de00_wxs_gdc_realn.bam 28248985952 BAM harmonized CPTAC3 dd799f72-6585-4287-a674-bcfe0874b089 ccb7777eb8c68ee220301565e232ea46 {"aliquot_tag": "ALQ_22e67bd6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01469.MethArray.Green.T C3L-01469 CCRCC Methylation_Array tumor CPT0389960006 205555390118_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 427f2666-5ff1-4dc0-a12c-c4ee21b33758 d817b16f2f8ade701d08eb9b1076eac9 {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.MethArray.Red.T C3L-01469 CCRCC Methylation_Array tumor CPT0389960006 205555390118_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 bb3a613b-7585-497b-9126-5ebfbe237ebd e8bb1ead9ad41a34e6d8626695c7969d {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.miRNA-Seq.S25_L002_R1.T C3L-01469 CCRCC miRNA-Seq tumor CPT0389960009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CATTTT_S25_L002_R1_001.unaln.bam 313865480 BAM S25_L002_R1 submitted_unaligned CPTAC3 fb48fef1-a7e0-4bde-808a-c8816a4f42c9 af36f1abc6a8dfa0a21cb33d27bd6f6c {"aliquot_tag": "ALQ_b6a421a2", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.miRNA-Seq.T.hg38 C3L-01469 CCRCC miRNA-Seq tumor CPT0389960009 53070b5a-b6ef-43cb-ae80-09ed97d059fa_mirnaseq_gdc_realn.bam 342368308 BAM harmonized CPTAC3 6ca7807a-e585-4fb0-ae94-c344e65fc34e 53caf9c0d6bd3c5cf2458ac61108b9d2 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.RNA-Seq.chimeric.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.chimeric.gdc_realn.bam 350046696 BAM chimeric harmonized CPTAC3 91fcfdbb-c615-4bb4-ad40-b5a965d31b5d c776af278b888c7ece187c551c6d3ef9 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.RNA-Seq.genomic.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.genomic.gdc_realn.bam 8722053084 BAM genomic harmonized CPTAC3 40a1a365-79d3-4867-959e-3dad8a8ddd31 44a796bb6a4847d734fca5ead6498013 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.RNA-Seq.S1_L001_R1.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R1_001.fastq.gz 4226089393 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 faac51ac-ce75-4211-be32-823eccae23b7 d96f217fc43b7905a9e1d3a711fe1d09 {"aliquot_tag": "ALQ_b6a421a2", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.RNA-Seq.S1_L001_R2.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R2_001.fastq.gz 4704241839 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 50ffd64f-4028-4dd2-b0b4-1101ccfdbc75 6b33d1e85274580fab92a553fc8931c5 {"aliquot_tag": "ALQ_b6a421a2", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.RNA-Seq.transcriptome.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.transcriptome.gdc_realn.bam 11528882076 BAM transcriptome harmonized CPTAC3 51e4693f-214f-44ab-b9a5-326d4b59ec7c 2819c7f02416bafef124f421566f8a49 {"aliquot_tag": "ALQ_b6a421a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.WGS.N C3L-01469 CCRCC WGS blood_normal CPT0390020002 CPT0390020002.WholeGenome.RP-2158.bam 32850453077 BAM submitted_aligned CPTAC3 d798d145-0d37-4cd7-a6ff-1a90178a7b20 de5df9b56ac85c47b4889a945f86e625 {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01469.WGS.N.hg38 C3L-01469 CCRCC WGS blood_normal CPT0390020002 c4919502-2b51-4cfa-9567-c6e3a211db9c_wgs_gdc_realn.bam 98876399452 BAM harmonized CPTAC3 ad9572e1-9b79-492c-b977-cc80307f7251 006e1c1f87a9dc18abe3be4791f44938 {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01469.WGS.T C3L-01469 CCRCC WGS tumor CPT0389960006 CPT0389960006.WholeGenome.RP-2158.bam 21520810421 BAM submitted_aligned CPTAC3 2853c525-61b4-46e9-8e02-8a0193ad8844 b1eff032f4c4c827d27b6b14218ff9cc {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.WGS.T.hg38 C3L-01469 CCRCC WGS tumor CPT0389960006 9f7f784f-fa97-4bc3-86d5-11a092887c00_wgs_gdc_realn.bam 64460051254 BAM harmonized CPTAC3 a1a1ac80-239b-425d-bd78-1dc1f86f5b13 254ae4e80dbe32cbdf4ed98798b26e4e {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.WXS.N C3L-01469 CCRCC WXS blood_normal CPT0390020002 CPT0390020002.WholeExome.RP-1303.bam 20844981276 BAM submitted_aligned CPTAC3 20de96fc-8a55-4803-9011-559296403a64 5939fff51294783180d105b08141e373 {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01469.WXS.N.hg38 C3L-01469 CCRCC WXS blood_normal CPT0390020002 c4919502-2b51-4cfa-9567-c6e3a211db9c_wxs_gdc_realn.bam 28562187347 BAM harmonized CPTAC3 75b766d2-7151-484c-88cc-6b6827b089d7 1d6566c66912fdc4ba70fbdd6f61d56f {"aliquot_tag": "ALQ_aacb4a6f", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01469.WXS.T C3L-01469 CCRCC WXS tumor CPT0389960006 CPT0389960006.WholeExome.RP-1303.bam 22120202968 BAM submitted_aligned CPTAC3 d46aa473-23c6-4b55-9c09-618bba0f1766 398a576bbcf5510e850efff0c76a7021 {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01469.WXS.T.hg38 C3L-01469 CCRCC WXS tumor CPT0389960006 9f7f784f-fa97-4bc3-86d5-11a092887c00_wxs_gdc_realn.bam 30928051642 BAM harmonized CPTAC3 41ef7dab-f67b-46f8-9914-a63a47605833 d1b2c14ff7678fcbbc01fe38e3e5c9c2 {"aliquot_tag": "ALQ_261b3c33", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01470.MethArray.Green.T C3L-01470 CCRCC Methylation_Array tumor CPT0085580009 202184900148_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 18d7bbe4-9acb-41d8-ab34-c09300866e2b df487d6675a0c3aedb706125dec9576c {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.MethArray.Red.T C3L-01470 CCRCC Methylation_Array tumor CPT0085580009 202184900148_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 6abd0a90-4a0a-4bbe-b5ce-cd823dd377bf 62c0cd4521cac6433ea44459704a1202 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.miRNA-Seq.S2_L008_R1.T C3L-01470 CCRCC miRNA-Seq tumor CPT0085580006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L008_R1_001.unaln.bam 215195902 BAM S2_L008_R1 submitted_unaligned CPTAC3 780f34d5-751b-445a-ab41-9710245248e5 c71ed73dd86181d4303ad3299be50bda {"aliquot_tag": "ALQ_10c41498", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.miRNA-Seq.T.hg38 C3L-01470 CCRCC miRNA-Seq tumor CPT0085580006 7d2010ed-2a00-4b43-9842-55711f93dfca_mirnaseq_gdc_realn.bam 241866693 BAM harmonized CPTAC3 6d7d13d9-1c87-4e95-bc78-def1e64a702e 68f6deff5695d4dc28dd977d3643ed71 {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.RNA-Seq.chimeric.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.chimeric.gdc_realn.bam 38223622 BAM chimeric harmonized CPTAC3 8f2b6cd2-8680-4f9c-895a-af871e70704f d49d6949ab48055297d0ff5dbd82036f {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.RNA-Seq.genomic.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.genomic.gdc_realn.bam 7504186886 BAM genomic harmonized CPTAC3 1bb96681-6ef7-41e0-8605-8a47ce88d99a 0497b5e3d958cfff7ca04c75f9041808 {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.RNA-Seq.S12_L003_R1.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R1_001.fastq.gz 3744221386 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 9759d0b4-497d-49dc-8200-22451570cf81 3b7053905860a23cfd9b81485c9982dc {"aliquot_tag": "ALQ_10c41498", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.RNA-Seq.S12_L003_R2.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R2_001.fastq.gz 3972253455 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 f769572b-2a4b-4b8e-8ff6-7b0a8a404c62 ba19d9523882db3ecc2e4d2708cd989d {"aliquot_tag": "ALQ_10c41498", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.RNA-Seq.transcriptome.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.transcriptome.gdc_realn.bam 9803460582 BAM transcriptome harmonized CPTAC3 19e35587-48bc-4f78-acb9-d1d2adea67d2 f1df9f1008c4eda20e1440a7f14974c3 {"aliquot_tag": "ALQ_10c41498", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.WGS.N C3L-01470 CCRCC WGS blood_normal CPT0086570002 CPT0086570002.WholeGenome.RP-1303.bam 65595805215 BAM submitted_aligned CPTAC3 e93011d0-0dbd-4ec8-9c16-0e3eb738b6fe ed2b3e22bbe6fe582213fffc4a8ec6ff {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01470.WGS.N.hg38 C3L-01470 CCRCC WGS blood_normal CPT0086570002 8de44709-a946-4db7-b5da-59703abe93b4_gdc_realn.bam 99349797270 BAM harmonized CPTAC3 55ed3ee4-ba5f-4347-83d4-98e7d1cabcad 8be281239022adac1276a0c4b6d44511 {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01470.WGS.T C3L-01470 CCRCC WGS tumor CPT0085580009 CPT0085580009.WholeGenome.RP-1303.bam 82740323787 BAM submitted_aligned CPTAC3 17aa60d9-0a28-4a9a-bde3-255a85fac974 7cfe30688fe069edb0017206f112a468 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.WGS.T.hg38 C3L-01470 CCRCC WGS tumor CPT0085580009 1102bb6d-67fa-48a6-a346-798aecc937ee_gdc_realn.bam 127101126454 BAM harmonized CPTAC3 d5e709d5-4b10-41f4-9585-882f49a81e8c 6d0dd33ee551f9093c32a6be74ace209 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.WXS.N C3L-01470 CCRCC WXS blood_normal CPT0086570002 CPT0086570002.WholeExome.RP-1303.bam 33538106243 BAM submitted_aligned CPTAC3 49bf25e6-8283-4e82-bc4c-7d5284a5d5cd 7be331af366e9598cd329fb3af8fcd62 {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01470.WXS.N.hg38 C3L-01470 CCRCC WXS blood_normal CPT0086570002 8de44709-a946-4db7-b5da-59703abe93b4_gdc_realn.bam 46736447632 BAM harmonized CPTAC3 a6077b6b-e305-49c3-b57d-05f967a1f938 75874174f1441953fce88ea9fcc63b8d {"aliquot_tag": "ALQ_a4115dcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01470.WXS.T C3L-01470 CCRCC WXS tumor CPT0085580009 CPT0085580009.WholeExome.RP-1303.bam 37494557851 BAM submitted_aligned CPTAC3 7d7d9780-9ad1-4a9d-a508-99281570bfde f570d37472e47723aed282ad5aa54215 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01470.WXS.T.hg38 C3L-01470 CCRCC WXS tumor CPT0085580009 1102bb6d-67fa-48a6-a346-798aecc937ee_gdc_realn.bam 51708510156 BAM harmonized CPTAC3 4586a671-da98-4185-b28b-875b72f5773e b65567aa6c7810790aa34196bb2f4729 {"aliquot_tag": "ALQ_807b0909", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.MethArray.Green.T C3L-01553 CCRCC Methylation_Array tumor CPT0065930009 202163550072_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 1d7b5bc3-3cd0-4c8e-acab-844f4a428399 9cd58d2a2969ba55d02590347c3517ad {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.MethArray.Red.T C3L-01553 CCRCC Methylation_Array tumor CPT0065930009 202163550072_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 23ef3c24-3779-4993-b0e1-bc66fa6c0ce5 6a2064a8ecf2edfdbdc4d2bfc530010c {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.miRNA-Seq.S10_L001_R1.T C3L-01553 CCRCC miRNA-Seq tumor CPT0065930006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L001_R1_001.unaln.bam 215893831 BAM S10_L001_R1 submitted_unaligned CPTAC3 6862d8f3-bfd6-4c78-b2a3-131c6de57de9 13e8433429f29ab94dac732d96e1658a {"aliquot_tag": "ALQ_55cf7c0", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.miRNA-Seq.T.hg38 C3L-01553 CCRCC miRNA-Seq tumor CPT0065930006 cf3e0964-5b63-4083-88be-e6b111e7a110_mirnaseq_gdc_realn.bam 239044225 BAM harmonized CPTAC3 80b98e17-edae-4854-895f-8e6e7603ac15 88373e9e5a219f682b6cc05123dbe0cc {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.RNA-Seq.chimeric.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.chimeric.gdc_realn.bam 22312832 BAM chimeric harmonized CPTAC3 65cc76d9-4003-4bff-9d87-2e1ab9409f5b b42954bf5d75515a2429a7346c92297a {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.RNA-Seq.genomic.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.genomic.gdc_realn.bam 6317313849 BAM genomic harmonized CPTAC3 39839e30-dc84-4973-b222-94b7d6f96582 c014c47b8d5fa2fcc0ed4a75b895b853 {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.RNA-Seq.S2_L001_R1.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R1_001.fastq.gz 2898004043 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 88f1547d-1fe2-4d7f-b9d9-0e31082648e4 455fa6275226b7092eb689e41fe67cf2 {"aliquot_tag": "ALQ_55cf7c0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.RNA-Seq.S2_L001_R2.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R2_001.fastq.gz 3031203940 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 b95d6272-2af8-4cdb-8af2-3e30c8cca1fc 1ea0adf66c4b42d4e613a23494afde89 {"aliquot_tag": "ALQ_55cf7c0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.RNA-Seq.transcriptome.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.transcriptome.gdc_realn.bam 9391726705 BAM transcriptome harmonized CPTAC3 49c53332-89a7-4e08-8b11-a501ef82e231 d73d0454c12e66cabd005a950b30252a {"aliquot_tag": "ALQ_55cf7c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.WGS.N C3L-01553 CCRCC WGS blood_normal CPT0067730002 CPT0067730002.WholeGenome.RP-1303.bam 62449487609 BAM submitted_aligned CPTAC3 de931e73-d1d6-401e-8ffb-6e7bab8792a6 9d6b2c4e332199544a071c6172f44d4c {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01553.WGS.N.hg38 C3L-01553 CCRCC WGS blood_normal CPT0067730002 f6acdb05-d0ca-4749-8b17-c1af50669ffd_gdc_realn.bam 95102968730 BAM harmonized CPTAC3 5701e656-f407-4a48-9540-92e70295ee88 95f4682dec0ce92351822a27c8284fa3 {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01553.WGS.T C3L-01553 CCRCC WGS tumor CPT0065930009 CPT0065930009.WholeGenome.RP-1303.bam 85787134965 BAM submitted_aligned CPTAC3 5dd8ab2b-f85f-4f0d-ba06-440f2d3d51e0 fa39a2c29dc898f03331c86357015b5c {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.WGS.T.hg38 C3L-01553 CCRCC WGS tumor CPT0065930009 e1873371-dfb8-4bcf-9862-d45b58e04f41_gdc_realn.bam 126318259401 BAM harmonized CPTAC3 ca0c26c3-7726-4424-978d-05e3957d2108 a072513f017eada44448c971fb0bf4bd {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.WXS.N C3L-01553 CCRCC WXS blood_normal CPT0067730002 CPT0067730002.WholeExome.RP-1303.bam 29388884992 BAM submitted_aligned CPTAC3 9959f8af-0878-4873-8c27-5384217b2fb1 bb4f3d852452ec8d359f2b7f542785c5 {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01553.WXS.N.hg38 C3L-01553 CCRCC WXS blood_normal CPT0067730002 f6acdb05-d0ca-4749-8b17-c1af50669ffd_gdc_realn.bam 39340329503 BAM harmonized CPTAC3 c251e128-10bd-4cac-956d-3bee70e4114e 693c4ff92fc3b47e5fba47e6111bfd3f {"aliquot_tag": "ALQ_afa44380", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01553.WXS.T C3L-01553 CCRCC WXS tumor CPT0065930009 CPT0065930009.WholeExome.RP-1303.bam 21329147214 BAM submitted_aligned CPTAC3 7540d89c-32dd-4231-83dc-9c8e6b799ff3 b91c2ca540652038454337cc3850c244 {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01553.WXS.T.hg38 C3L-01553 CCRCC WXS tumor CPT0065930009 e1873371-dfb8-4bcf-9862-d45b58e04f41_gdc_realn.bam 29376112728 BAM harmonized CPTAC3 4d2af406-3837-4470-b125-a4c2ecb3140b f0db9bc5a780e8a3e8ef0a833dd27bc3 {"aliquot_tag": "ALQ_95e3ea51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.MethArray.Green.T C3L-01557 CCRCC Methylation_Array tumor CPT0085670009 202184900105_R04C01_Grn.idat 13676222 IDAT Green NA CPTAC3 bb9c029b-8648-4b5c-b0c8-2b9d40ebc204 ece52f8f4f3f91e009b5cb1c1690d6c9 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.MethArray.Red.T C3L-01557 CCRCC Methylation_Array tumor CPT0085670009 202184900105_R04C01_Red.idat 13676222 IDAT Red NA CPTAC3 3cb4c9a7-1ca6-4738-a15c-8c72abc70401 753edbce384aa37bdcb3f7013f7cf00e {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.miRNA-Seq.S3_L008_R1.T C3L-01557 CCRCC miRNA-Seq tumor CPT0085670006 181108_UNC31-K00269_0163_BH23TVBBXY_TTAGGC_S3_L008_R1_001.unaln.bam 183355573 BAM S3_L008_R1 submitted_unaligned CPTAC3 4ac0cee1-2bd2-4bb5-8816-c955b0482422 6e4dcd295e11592388ac8d8cd220c2b5 {"aliquot_tag": "ALQ_1400f1e7", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.miRNA-Seq.T.hg38 C3L-01557 CCRCC miRNA-Seq tumor CPT0085670006 e411f73b-a242-423c-84bd-922e951d45c6_mirnaseq_gdc_realn.bam 201372835 BAM harmonized CPTAC3 e7264cdc-6baa-498b-aa94-e7e677528f22 20c9fea387c0bc74fcd9ac0e20bf65ff {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.RNA-Seq.chimeric.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.chimeric.gdc_realn.bam 38561353 BAM chimeric harmonized CPTAC3 f81c31fc-1820-4f05-98c1-bbe5b28724d5 8c88289721e8cb247392c873ae21f23f {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.RNA-Seq.genomic.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.genomic.gdc_realn.bam 8109427041 BAM genomic harmonized CPTAC3 ad9a640c-4ef0-4807-b39d-91681525d287 e9f7000e38f26bc8d38f74c067b77660 {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.RNA-Seq.S5_L002_R1.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 4010965070 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 9737ca2e-f500-45d5-b19f-d14a424cb8af 254ca5607eaad506a2ffb799bd9be0a8 {"aliquot_tag": "ALQ_1400f1e7", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.RNA-Seq.S5_L002_R2.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4415237814 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 34d4bcaf-18d8-4e02-aeee-8e3c0e0aafac 579650b06a6816424e407d28b263454e {"aliquot_tag": "ALQ_1400f1e7", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.RNA-Seq.transcriptome.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.transcriptome.gdc_realn.bam 11484970206 BAM transcriptome harmonized CPTAC3 7ad37908-042c-4aa5-a244-8a5f293bf210 3552a5544aaff5f0838fa8f2984bd204 {"aliquot_tag": "ALQ_1400f1e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.WGS.N C3L-01557 CCRCC WGS blood_normal CPT0086610002 CPT0086610002.WholeGenome.RP-1303.bam 81848564729 BAM submitted_aligned CPTAC3 b5f15ceb-e464-40c3-ba3f-80b6a129bd86 0471f6a2497aa29292b3a416d2dc0aad {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01557.WGS.N.hg38 C3L-01557 CCRCC WGS blood_normal CPT0086610002 61c4ce19-1344-4ae6-be82-de54cc998174_gdc_realn.bam 122945078992 BAM harmonized CPTAC3 ed4f7914-5f9c-4f7f-9cea-57c3509be67b 69dcf827e3a823db2a81690c9d44e06b {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01557.WGS.T C3L-01557 CCRCC WGS tumor CPT0085670009 CPT0085670009.WholeGenome.RP-1303.bam 60851485870 BAM submitted_aligned CPTAC3 1a0d04d2-3eb3-4a9d-93c0-70888e7a4b03 d58af2e3cf042ffdd3037e1e732c2167 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.WGS.T.hg38 C3L-01557 CCRCC WGS tumor CPT0085670009 6e1356e3-0fdb-49b2-b2b9-b40c87cc3ba4_gdc_realn.bam 91106368828 BAM harmonized CPTAC3 55fd5faf-4191-42b1-a81c-2a01d6135dec b77d5b8b3ee966079a4f8c8e08408676 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.WXS.N C3L-01557 CCRCC WXS blood_normal CPT0086610002 CPT0086610002.WholeExome.RP-1303.bam 33048989827 BAM submitted_aligned CPTAC3 7e3fad0a-794a-4f3d-98f1-90a255deacbc ce71a91941b367683c964e78ed2cb3be {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01557.WXS.N.hg38 C3L-01557 CCRCC WXS blood_normal CPT0086610002 61c4ce19-1344-4ae6-be82-de54cc998174_gdc_realn.bam 44820370719 BAM harmonized CPTAC3 4f8096cc-4038-4ce5-a4fe-54fe805d544a d334d8414477ec25490b3c78007305cc {"aliquot_tag": "ALQ_adc5dac3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01557.WXS.T C3L-01557 CCRCC WXS tumor CPT0085670009 CPT0085670009.WholeExome.RP-1303.bam 29713910902 BAM submitted_aligned CPTAC3 bfc7eaa6-b9be-412c-a742-19f574e08dc1 e7f8ef69b56e6fc4d37abce95347e589 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01557.WXS.T.hg38 C3L-01557 CCRCC WXS tumor CPT0085670009 6e1356e3-0fdb-49b2-b2b9-b40c87cc3ba4_gdc_realn.bam 41192205755 BAM harmonized CPTAC3 9438e085-90a5-4548-a9cf-05ccc6153f25 78a931c1065dd54cf4c41f893dfc3d09 {"aliquot_tag": "ALQ_84bfec76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01558.MethArray.Green.T C3L-01558 CCRCC Methylation_Array tumor CPT0390330006 205555380179_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5223e1b9-93d1-4efd-b786-b3bb5cb13720 cd5f0d88fcfb719fdbcf6488fb6de6fd {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.MethArray.Red.T C3L-01558 CCRCC Methylation_Array tumor CPT0390330006 205555380179_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 7328d370-0913-4e10-8d70-789d61ef625d 0fa7aee71ef39d924ba0d4934494f21b {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.miRNA-Seq.S33_L002_R1.T C3L-01558 CCRCC miRNA-Seq tumor CPT0390330009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TACAGC_S33_L002_R1_001.unaln.bam 321717925 BAM S33_L002_R1 submitted_unaligned CPTAC3 2a1ecc42-c6a1-43d5-8cdd-a23fe6823867 7dd5bae1412d1417632476ecaba431cc {"aliquot_tag": "ALQ_86edc8f9", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.miRNA-Seq.T.hg38 C3L-01558 CCRCC miRNA-Seq tumor CPT0390330009 83796f24-269d-454d-a138-462667cd5454_mirnaseq_gdc_realn.bam 339645710 BAM harmonized CPTAC3 a9933d44-40ef-4c50-9cc7-b223968846f7 5cad7a1ab5b67499497ad3f57826986c {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.RNA-Seq.chimeric.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.chimeric.gdc_realn.bam 472896402 BAM chimeric harmonized CPTAC3 d74809bb-952a-473f-b60d-cd93e3e32dbc 9ed773f210c406f7ad5240f9534221dd {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.RNA-Seq.genomic.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.genomic.gdc_realn.bam 8100669314 BAM genomic harmonized CPTAC3 24bca6a1-0fc7-45ec-b881-b587302e39d7 e94229a06334a06277b9c705dbac83e4 {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.RNA-Seq.S22_L007_R1.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R1_001.fastq.gz 3977878573 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 93c8433b-f362-440f-894a-3483f9ae9373 aa045fc124118949a1f6c3f3ef3d8d4e {"aliquot_tag": "ALQ_86edc8f9", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.RNA-Seq.S22_L007_R2.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R2_001.fastq.gz 4353477130 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 efd6bdca-6cde-4b15-9195-90190ed25cc9 d4921d2acf9d37367ab2358300f02831 {"aliquot_tag": "ALQ_86edc8f9", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.RNA-Seq.transcriptome.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.transcriptome.gdc_realn.bam 9955619486 BAM transcriptome harmonized CPTAC3 77b19519-4d0a-454b-9487-88d376098a81 53259e266364c1fa798c38a5da4989e7 {"aliquot_tag": "ALQ_86edc8f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.WGS.N C3L-01558 CCRCC WGS blood_normal CPT0390390002 CPT0390390002.WholeGenome.RP-2158.bam 26076992044 BAM submitted_aligned CPTAC3 f49c8a56-2ff4-42a9-9777-bd288d6bf342 5d3e79cabe9257988332e823e8298ce4 {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01558.WGS.N.hg38 C3L-01558 CCRCC WGS blood_normal CPT0390390002 5a2482f4-c011-4f2f-80e5-dbfee08aae1b_wgs_gdc_realn.bam 80433406157 BAM harmonized CPTAC3 a0ed1560-7e6a-4e0a-8c70-b20982be37de b4940386e8933065a5a3082d9723c00a {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01558.WGS.T C3L-01558 CCRCC WGS tumor CPT0390330006 CPT0390330006.WholeGenome.RP-2158.bam 25751515320 BAM submitted_aligned CPTAC3 38182611-5069-4cd7-a7c7-6067da7af6b1 c08a993a0b5c74477566bd2534c70cfa {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.WGS.T.hg38 C3L-01558 CCRCC WGS tumor CPT0390330006 f849a79f-ed8e-4585-8ed7-621eb60f38cd_wgs_gdc_realn.bam 77063641349 BAM harmonized CPTAC3 8678e299-7b61-4a05-80a6-9d99bca86dd3 d71c0e5efacf2a760c4b606410ceb29c {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.WXS.N C3L-01558 CCRCC WXS blood_normal CPT0390390002 CPT0390390002.WholeExome.RP-1303.bam 34225155112 BAM submitted_aligned CPTAC3 a8caa63e-d3cc-412b-8456-f7c11638f0ba cb9bfc6dae9d94ebc1691d5377c8829f {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01558.WXS.N.hg38 C3L-01558 CCRCC WXS blood_normal CPT0390390002 5a2482f4-c011-4f2f-80e5-dbfee08aae1b_wxs_gdc_realn.bam 46058570956 BAM harmonized CPTAC3 f46d2e18-eaf2-4fee-abd6-7bd4b48614b1 e71014fa596d83dcdf993d7247c56edc {"aliquot_tag": "ALQ_5b8f09d0", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01558.WXS.T C3L-01558 CCRCC WXS tumor CPT0390330006 CPT0390330006.WholeExome.RP-1303.bam 27629571305 BAM submitted_aligned CPTAC3 079f83c3-4342-4592-a54e-44a5a7f13742 f26713ed65dbc98a37cc2f3aec0c6fcc {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01558.WXS.T.hg38 C3L-01558 CCRCC WXS tumor CPT0390330006 f849a79f-ed8e-4585-8ed7-621eb60f38cd_wxs_gdc_realn.bam 37797735335 BAM harmonized CPTAC3 e4985b2c-c4a9-4ea8-8011-38979341cca8 4c4c491bae1f9147d3e8c0fa1359f0dd {"aliquot_tag": "ALQ_1652d568", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01560.MethArray.Green.T C3L-01560 CCRCC Methylation_Array tumor CPT0086030009 202176290087_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 605a6eaf-2a65-4d44-8fce-27c7e0616992 2105a5aebbf18e24df679430dac19288 {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.MethArray.Red.T C3L-01560 CCRCC Methylation_Array tumor CPT0086030009 202176290087_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 9f38d43a-834a-4e04-9372-e242dc319db4 8902b0f5924ed7892fa2755ba8097ddf {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.miRNA-Seq.S48_L002_R1.T C3L-01560 CCRCC miRNA-Seq tumor CPT0086030006 181113_UNC31-K00269_0164_AH23NNBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 210241325 BAM S48_L002_R1 submitted_unaligned CPTAC3 2fefd23c-3065-4b98-a1c2-e7481148bdf9 7eb36f7360e1fbb051630c32487e4408 {"aliquot_tag": "ALQ_631aea7", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.miRNA-Seq.T.hg38 C3L-01560 CCRCC miRNA-Seq tumor CPT0086030006 3d506b8a-4f54-46eb-b3d6-6a793bec1640_mirnaseq_gdc_realn.bam 229601597 BAM harmonized CPTAC3 1781d3a0-f0d4-4258-aea9-5169b06806fe ef797b9b399a7f77674c467c505fb726 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.RNA-Seq.chimeric.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.chimeric.gdc_realn.bam 44035878 BAM chimeric harmonized CPTAC3 288438a6-79f6-4806-86b1-2e3d4c32d27b cc5a9322d088f7c369612e3b2993be67 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.RNA-Seq.genomic.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.genomic.gdc_realn.bam 9612780829 BAM genomic harmonized CPTAC3 9c2c397f-23fd-4643-b6f4-1e3af764f572 fe423768bc6788fbb820d636be2137a5 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.RNA-Seq.S2_L001_R1.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4641575499 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 db9b8954-51ad-4c21-8c8e-3f2469dfa347 617f48e835b8d6f8ac012f596684d039 {"aliquot_tag": "ALQ_631aea7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.RNA-Seq.S2_L001_R2.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5081432549 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 accf0284-6fcf-48c4-8438-5d31e3b84768 281f7e4ed4a8ae214b06162a4942fc7b {"aliquot_tag": "ALQ_631aea7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.RNA-Seq.transcriptome.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.transcriptome.gdc_realn.bam 12794964599 BAM transcriptome harmonized CPTAC3 9d601fb9-8ab9-4e6c-bf9f-8d7996b85094 b0400fbc0bff561f761f552ffe086ab4 {"aliquot_tag": "ALQ_631aea7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.WGS.N C3L-01560 CCRCC WGS blood_normal CPT0086720001 CPT0086720001.WholeGenome.RP-1303.bam 64782999863 BAM submitted_aligned CPTAC3 8548b067-86ed-4035-aecd-a144f09ba55d 12264e5b37e3075a152528c85119a39b {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01560.WGS.N.hg38 C3L-01560 CCRCC WGS blood_normal CPT0086720001 91858a3e-1ed3-4dd8-ae19-b5cf5123ce6f_gdc_realn.bam 97760578671 BAM harmonized CPTAC3 0b520f15-e3fb-431e-bc04-bb471589cceb 51768fab5c2206c29a6fac253d644435 {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01560.WGS.T C3L-01560 CCRCC WGS tumor CPT0086030009 CPT0086030009.WholeGenome.RP-1303.bam 75565265727 BAM submitted_aligned CPTAC3 f473f386-fd67-433c-8d5b-63faae871e87 48d50ce37fffc2ec8143180ff74eec5c {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.WGS.T.hg38 C3L-01560 CCRCC WGS tumor CPT0086030009 6fb2d180-e432-450f-81c9-2905ce7fc8af_gdc_realn.bam 112550979446 BAM harmonized CPTAC3 b7c6ca7c-21db-4103-ae6f-0de9389ece8b 5d309b6e940d01ad5a64a376c49cc3f8 {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.WXS.N C3L-01560 CCRCC WXS blood_normal CPT0086720001 CPT0086720001.WholeExome.RP-1303.bam 34680641576 BAM submitted_aligned CPTAC3 78009786-949d-47d6-928e-4411f0d74f27 b3d0846e70f1f56af25a83f4a4df7760 {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01560.WXS.N.hg38 C3L-01560 CCRCC WXS blood_normal CPT0086720001 91858a3e-1ed3-4dd8-ae19-b5cf5123ce6f_gdc_realn.bam 47512651042 BAM harmonized CPTAC3 9394759e-b0e8-4e64-89d6-04a796969793 7b413dfd0a03822a6682ca3c40087b23 {"aliquot_tag": "ALQ_b830220c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01560.WXS.T C3L-01560 CCRCC WXS tumor CPT0086030009 CPT0086030009.WholeExome.RP-1303.bam 30606178111 BAM submitted_aligned CPTAC3 dc50a2bc-2a57-410e-b5bc-2be5143c1640 8fc56c0c135ec6a94a7ecac294b7a574 {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01560.WXS.T.hg38 C3L-01560 CCRCC WXS tumor CPT0086030009 6fb2d180-e432-450f-81c9-2905ce7fc8af_gdc_realn.bam 42239001120 BAM harmonized CPTAC3 9300a20b-9b5b-4882-b110-4589f417a06d 723ace31f701785de5c40f31cd43008b {"aliquot_tag": "ALQ_968eb336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.ADD_813ae14b.MethArray.Green.T C3L-01598 PDA Methylation_Array tumor CPT0091660009 202234370091_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 27baaf53-cf76-46d1-b6ce-7b3ad19f0448 9386dae645bd95b14aafe08342aa0abb {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.ADD_813ae14b.MethArray.Red.T C3L-01598 PDA Methylation_Array tumor CPT0091660009 202234370091_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 287d8fca-94a2-46f4-acac-8cbb4939ba11 4000d8fb8e54c01217bea32d0e9e6ea6 {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.ADD_813ae14b.WGS.T C3L-01598 PDA WGS tumor CPT0091660009 CPT0091660009.WholeGenome.RP-1303.bam 62518760424 BAM submitted_aligned CPTAC3 d4d6ca7f-9541-431a-9cd3-3eb3d6708ff8 7a487acd0878480351aa16846666e64a {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.ADD_813ae14b.WGS.T.hg38 C3L-01598 PDA WGS tumor CPT0091660009 bac77f65-6e9c-4500-aebb-e5a01555c606_wgs_gdc_realn.bam 90821592426 BAM harmonized CPTAC3 8fd1e997-179f-45e1-9fd4-6b0568213065 5e3dd3e988891a85813be9609ce6039b {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.ADD_813ae14b.WXS.T C3L-01598 PDA WXS tumor CPT0091660009 CPT0091660009.WholeExome.RP-1303.bam 42562720654 BAM submitted_aligned CPTAC3 c4d5e807-e4e0-43f2-8c32-de2e48cffa13 955ece3c35f222b8eec518aaa94e0dda {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.ADD_813ae14b.WXS.T.hg38 C3L-01598 PDA WXS tumor CPT0091660009 bac77f65-6e9c-4500-aebb-e5a01555c606_wxs_gdc_realn.bam 58520503197 BAM harmonized CPTAC3 e7220b9c-9aa8-42e8-8edc-4a01172ae221 4d5a1fd85f64281e7d8990ee73ee794c {"aliquot_tag": "ADD_813ae14b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.MethArray.Green.A C3L-01598 PDA Methylation_Array tissue_normal CPT0091680006 203561620091_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 5b8f2849-6a6f-42e0-89fe-443a53fcd1ce af6b5bf13476b062951ae16ab36f9efc {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01598.MethArray.Red.A C3L-01598 PDA Methylation_Array tissue_normal CPT0091680006 203561620091_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 6af79e4b-983a-4cc3-bf30-b6a044b297db 30c536430e9692fca4a91329585d1a2f {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01598.miRNA-Seq.S16_L006_R1.T C3L-01598 PDA miRNA-Seq tumor CPT0091660006 180828_UNC32-K00270_0112_AHWTLNBBXX_ACTTGA_S16_L006_R1_001.unaln.bam 230053299 BAM S16_L006_R1 submitted_unaligned CPTAC3 ccae5475-86c2-4a4a-9ba5-6d471b414810 9ecafc8e6218277a9df29e836b6845f7 {"aliquot_tag": "ALQ_1185fcda", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.miRNA-Seq.T.hg38 C3L-01598 PDA miRNA-Seq tumor CPT0091660006 96fdce6d-82ff-4882-bd92-2156325ae4eb_mirnaseq_gdc_realn.bam 259370167 BAM harmonized CPTAC3 a0f984c1-b0eb-4061-b328-97194a630664 b9a2591cbb13d7fe85a1b3db3d3eecd2 {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.RNA-Seq.chimeric.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.chimeric.gdc_realn.bam 43173440 BAM chimeric harmonized CPTAC3 ac6185fb-1287-4efd-bedd-1654533be2a2 9e6f2070d1ae298857c203ef958319dc {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.RNA-Seq.genomic.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.genomic.gdc_realn.bam 9944112917 BAM genomic harmonized CPTAC3 18fd8c43-23d4-4f49-ae1f-ba2a698713cd 965e7dd258aa87725d978f0801173951 {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.RNA-Seq.S4_L001_R1.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 4147745309 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 db006b75-16be-4d3c-8eb1-7f37bb7992a5 89b5ab5a01bff50a67fd37db0e56143d {"aliquot_tag": "ALQ_1185fcda", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.RNA-Seq.S4_L001_R2.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 4720778051 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 6a133ab8-8d0f-4a87-abde-f9e1fe9ac3bf 491359935c6df43908dab9c189901b74 {"aliquot_tag": "ALQ_1185fcda", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.RNA-Seq.transcriptome.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.transcriptome.gdc_realn.bam 12140412834 BAM transcriptome harmonized CPTAC3 ccda1c8e-31f5-45dc-84f1-9bc3965ba9d9 99307777d31f6e3495da4be896b0428d {"aliquot_tag": "ALQ_1185fcda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.Targeted.T C3L-01598 PDA Targeted_Sequencing tumor CPT0091660009_1 CPT0091660009_1.CustomSelection.RP-1303.PDO-18786.bam 5297055391 BAM submitted_aligned CPTAC3 036c4a6e-89f6-4723-a1d0-0d1dbe0965bc 1f4bc27f72b4ddba53f10b3cf596c1d9 {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.Targeted.T.hg38 C3L-01598 PDA Targeted_Sequencing tumor CPT0091660009_1 15814773-2f11-40f1-a6fb-d14270400e3a_targetedsequencing_gdc_realn.bam 7432931261 BAM harmonized CPTAC3 255efabd-6585-4f44-b2c4-5dd0c810fe8c b02e12348e0bc5ed7a513844cd95677a {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.WGS.A C3L-01598 PDA WGS tissue_normal CPT0091680006 CPT0091680006.WholeGenome.RP-1303.bam 58034459122 BAM submitted_aligned CPTAC3 55cc1725-7f27-43d7-999a-adc68eba46ce 8d5d79eb325a90eae27746883b257943 {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01598.WGS.A.hg38 C3L-01598 PDA WGS tissue_normal CPT0091680006 fd5ef7cc-8d76-4619-bb47-38e0b0cc00f7_wgs_gdc_realn.bam 85420353269 BAM harmonized CPTAC3 a9641e05-ac5c-4ec4-9a45-6ec957ad6171 8d2d2eb5b4634a6301345306428e641e {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01598.WGS.N C3L-01598 PDA WGS blood_normal CPT0093640002 CPT0093640002.WholeGenome.RP-1303.bam 57975403250 BAM submitted_aligned CPTAC3 9ea06234-c50a-42ce-9586-195deb3249f7 190385afa2616399fb33f0bcff1eb97c {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01598.WGS.N.hg38 C3L-01598 PDA WGS blood_normal CPT0093640002 95e7a2ce-67b2-45c6-b20e-d9ae349d508a_wgs_gdc_realn.bam 84849812961 BAM harmonized CPTAC3 b159c90f-e348-4daa-a4cb-180d7ef7638b 339e94366a207b5d1c9bce4ac6ae0c46 {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01598.WXS.A C3L-01598 PDA WXS tissue_normal CPT0091680006 CPT0091680006.WholeExome.RP-1303.bam 28005938891 BAM submitted_aligned CPTAC3 26f794f8-6e06-4ff5-8048-2fd07c28a0ee c2bbdacbadb1c86d1f22d807246e5ebb {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01598.WXS.A.hg38 C3L-01598 PDA WXS tissue_normal CPT0091680006 fd5ef7cc-8d76-4619-bb47-38e0b0cc00f7_wxs_gdc_realn.bam 37969740605 BAM harmonized CPTAC3 24e8e247-b58d-4b2d-ae7c-8155b7f22c85 77e96264e6c98ef70f77f45a7fa3ba3f {"aliquot_tag": "ALQ_aeb542bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01598.WXS.N C3L-01598 PDA WXS blood_normal CPT0093640002 CPT0093640002.WholeExome.RP-1303.bam 42428952772 BAM submitted_aligned CPTAC3 a068c125-251e-490e-bf38-a426bb839c39 7b0ed7af37b64f91a9cbd8998c350b25 {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01598.WXS.N.hg38 C3L-01598 PDA WXS blood_normal CPT0093640002 95e7a2ce-67b2-45c6-b20e-d9ae349d508a_wxs_gdc_realn.bam 58217784254 BAM harmonized CPTAC3 a90fde09-f8af-4195-b625-30d504f8d1e2 a654d0f92d8191b18598d7e2f27df10b {"aliquot_tag": "ALQ_fbb77a8a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01598.WXS.T C3L-01598 PDA WXS tumor CPT0091660009_1 CPT0091660009_1.WholeExome.RP-1303.bam 69160189378 BAM submitted_aligned CPTAC3 414e19b6-b45b-470d-bed4-be5259166039 2a70655ea6b6e7346419c8eb9cb09562 {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01598.WXS.T.hg38 C3L-01598 PDA WXS tumor CPT0091660009_1 15814773-2f11-40f1-a6fb-d14270400e3a_wxs_gdc_realn.bam 94515099740 BAM harmonized CPTAC3 a8c21a6b-9229-475c-a9a3-6497efa02c38 7c72ee72821625863bbc7fd2482ecf6a {"aliquot_tag": "ALQ_e9a49644", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01599.MethArray.Green.T C3L-01599 UCEC Methylation_Array tumor CPT0087260009 202184900148_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 7fa67a9f-76f0-414e-a58b-ce8624051be7 c65184e5cb4ef4b3c7439d31cee97441 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.MethArray.Red.T C3L-01599 UCEC Methylation_Array tumor CPT0087260009 202184900148_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 54f67752-b6c5-4243-ba79-e3bb1462c888 8e3cef59067945dc1617dfb8175c1741 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.miRNA-Seq.S1_L008_R1.T C3L-01599 UCEC miRNA-Seq tumor CPT0087260006 181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L008_R1_001.unaln.bam 190013701 BAM S1_L008_R1 submitted_unaligned CPTAC3 604485c8-d180-41f4-bff9-3e554b4888e0 2ae9b6e347ceb8e4662bca5351cc9d05 {"aliquot_tag": "ALQ_256e8b68", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.miRNA-Seq.T.hg38 C3L-01599 UCEC miRNA-Seq tumor CPT0087260006 606bc1eb-f5a2-4460-8bbe-22251e7afab4_mirnaseq_gdc_realn.bam 208376458 BAM harmonized CPTAC3 6fb0c4a5-f822-440f-b85c-61f911bc447f c504cccdfbd199c59f2f47ab9b0edad4 {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.chimeric.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.chimeric.gdc_realn.bam 27404951 BAM chimeric harmonized CPTAC3 270d5218-fcc6-4902-b15e-ce9e8918f7b0 9483f52dfa868955f10ecd7d368993dc {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.chimeric.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.chimeric.gdc_realn.bam 148009597 BAM chimeric harmonized CPTAC3 b9773c17-d00d-4f87-9eca-1c93af409dd2 7d79c1abbfc46ba04d1897692d32e81f {"aliquot_tag": "ALQ_273033af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.genomic.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.genomic.gdc_realn.bam 7093176807 BAM genomic harmonized CPTAC3 af6c1d49-05d2-4aa2-8495-5e5a0dc80b4b 1d5ca2e7c44b754ca000a6808c859359 {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.genomic.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.genomic.gdc_realn.bam 8270590150 BAM genomic harmonized CPTAC3 b1f37ba8-32ae-4acc-afb2-48b4e437cf85 3124ec34cbd83c50866be67d256ee53f {"aliquot_tag": "ALQ_273033af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.S10_L003_R1.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3425773606 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 20741a92-c13e-4dfb-85e3-6726c46ad318 b353f22c29f4e1a2cbaffd5e1e9e4c5a {"aliquot_tag": "ALQ_256e8b68", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.S10_L003_R2.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3732759221 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 ed63223c-b578-4071-bdf8-178a21e5e032 ef1115825dff6c567a46fb27593dc62e {"aliquot_tag": "ALQ_256e8b68", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.S58_R1.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R1_001.fastq.gz 4969455566 FASTQ S58_R1 submitted_unaligned CPTAC3 09f10941-42fe-47bb-a170-3fa0970bead9 63820604b14480ed90179b176f2f94eb {"aliquot_tag": "ALQ_273033af", "sample": "S58", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.S58_R2.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R2_001.fastq.gz 5158381706 FASTQ S58_R2 submitted_unaligned CPTAC3 22dae48f-7718-4bf3-93ad-607e94aa2e4d f551918aa0634f528968b0559d279da6 {"aliquot_tag": "ALQ_273033af", "sample": "S58", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.transcriptome.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.transcriptome.gdc_realn.bam 9422437080 BAM transcriptome harmonized CPTAC3 0468d872-7864-400b-a755-c198977095fe 188ca5ca6a1fa9f60a5ba741eaf6a58e {"aliquot_tag": "ALQ_256e8b68", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.RNA-Seq.transcriptome.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.transcriptome.gdc_realn.bam 4512065970 BAM transcriptome harmonized CPTAC3 1036b394-d65f-4f93-bb2c-09d8642d0846 60e1531db0c6289cba1126a34d28832a {"aliquot_tag": "ALQ_273033af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.WGS.N C3L-01599 UCEC WGS blood_normal CPT0087490002 CPT0087490002.WholeGenome.RP-1303.bam 64880951881 BAM submitted_aligned CPTAC3 2e88df73-279b-4d95-b0c8-00f6976cac60 c45467e6d0bd3d3ffbd258da795a720d {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01599.WGS.N.hg38 C3L-01599 UCEC WGS blood_normal CPT0087490002 340897a3-7324-4f04-a62c-b558e04fe62f_gdc_realn.bam 98063789736 BAM harmonized CPTAC3 4f2b06b9-64f0-4dfd-8ca7-e999e3e29975 9fc79af32666fcd7f7d2863a1ca12d00 {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01599.WGS.T C3L-01599 UCEC WGS tumor CPT0087260009 CPT0087260009.WholeGenome.RP-1303.bam 77658358712 BAM submitted_aligned CPTAC3 8dc08441-35f4-4635-a111-3860af695f52 7548ba8a4177d90a57117f70f9b9c188 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.WGS.T.hg38 C3L-01599 UCEC WGS tumor CPT0087260009 839e2341-52aa-4d86-8ea6-1a99976252cd_gdc_realn.bam 118541187758 BAM harmonized CPTAC3 18761edb-f5c8-4078-8d9e-29cb128c81f3 dde49aafdf2479c40071d49b29daef61 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.WXS.N C3L-01599 UCEC WXS blood_normal CPT0087490002 CPT0087490002.WholeExome.RP-1303.bam 33392050676 BAM submitted_aligned CPTAC3 07071966-270e-4f9c-8ca9-d172e6c0862b 2379654ebe37088d6070923a317f06b4 {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01599.WXS.N.hg38 C3L-01599 UCEC WXS blood_normal CPT0087490002 340897a3-7324-4f04-a62c-b558e04fe62f_gdc_realn.bam 46041078356 BAM harmonized CPTAC3 fc190a8b-9024-4876-ad9f-5b4d4482bc31 069492ff1c65df1ed213495bb2218a6f {"aliquot_tag": "ALQ_760a3bbd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01599.WXS.T C3L-01599 UCEC WXS tumor CPT0087260009 CPT0087260009.WholeExome.RP-1303.bam 30324942739 BAM submitted_aligned CPTAC3 d50d87a2-f56a-4946-b31e-4a67b38807ba 4f0da3071bba65e004d41153201a39b1 {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01599.WXS.T.hg38 C3L-01599 UCEC WXS tumor CPT0087260009 839e2341-52aa-4d86-8ea6-1a99976252cd_gdc_realn.bam 41722120312 BAM harmonized CPTAC3 9c4957ae-3d94-4e31-8faa-961265d3781c d9ea0ea12a8d9768f2c0df7930eced2a {"aliquot_tag": "ALQ_b5d196f9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.MethArray.Green.T C3L-01601 SAR Methylation_Array tumor CPT0087120009 202234360028_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 76261262-fb6f-4700-9f7c-64e92acb2e15 93f4f869def9164b7e582a6820a6bad1 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.MethArray.Red.T C3L-01601 SAR Methylation_Array tumor CPT0087120009 202234360028_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 0533c299-4ca6-495b-8a63-fcb49c1a1a28 7bfe175cd585580629cfad59465e00c9 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.miRNA-Seq.A.hg38 C3L-01601 SAR miRNA-Seq tissue_normal CPT0087130009 b57c0c5a-0c59-4cd2-9004-9d63bd81e9a1_mirnaseq_gdc_realn.bam 207409118 BAM harmonized CPTAC3 cfd48c02-6c15-4249-82a4-bf0ab7629173 7ab6ded46df155d9c42274ae6da333f1 {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.miRNA-Seq.S21_L005_R1.A C3L-01601 SAR miRNA-Seq tissue_normal CPT0087130009 181113_UNC31-K00269_0164_AH23NNBBXY_TCATTC_S21_L005_R1_001.unaln.bam 185600074 BAM S21_L005_R1 submitted_unaligned CPTAC3 ef54f3bd-9e86-4583-85b9-7e5e775607f9 c4b01a94ac7cad7972c2e0fc9cb2f6f2 {"aliquot_tag": "ALQ_fba56b27", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.miRNA-Seq.S37_L008_R1.T C3L-01601 SAR miRNA-Seq tumor CPT0087120006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATGTCA_S37_L008_R1_001.unaln.bam 258542822 BAM S37_L008_R1 submitted_unaligned CPTAC3 801b0079-b8ff-4855-874c-f030d22b16c4 b930cc024f700bdc72a25affa0d6b56a {"aliquot_tag": "ALQ_567a5f06", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.miRNA-Seq.T.hg38 C3L-01601 SAR miRNA-Seq tumor CPT0087120006 9985e417-d960-446a-b62f-5aeccc6d9498_mirnaseq_gdc_realn.bam 281238757 BAM harmonized CPTAC3 fdc1963b-9410-4239-886e-c612b55305cb 4946bf68631c95fb5fea7ad6d63d16bb {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.RNA-Seq.chimeric.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.chimeric.gdc_realn.bam 31309899 BAM chimeric harmonized CPTAC3 fa5ec2ad-5767-484c-8992-19902bb790f7 8c2c5b0d8ae3740e53bada6f343bb761 {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.RNA-Seq.chimeric.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.chimeric.gdc_realn.bam 36455540 BAM chimeric harmonized CPTAC3 9fe2a27b-fc47-4081-849e-d86fdae09e1d b1634046d670fce8421638180b0c8335 {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.RNA-Seq.genomic.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.genomic.gdc_realn.bam 9287870555 BAM genomic harmonized CPTAC3 99e26486-825b-4120-b028-3ea2e35ad155 cab9ae140a27078088b7358f63df8d5d {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.RNA-Seq.genomic.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.genomic.gdc_realn.bam 7342315684 BAM genomic harmonized CPTAC3 458f9cef-37d0-4659-84ad-dc68f77061eb 9ee8628581e0462a432158de6f00011e {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.RNA-Seq.S14_L004_R1.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R1_001.fastq.gz 3867660485 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 270ff7ed-03d6-482f-819d-c1192ac3dd79 62ba0c90a9c19fa0c6d8890c98f393b1 {"aliquot_tag": "ALQ_fba56b27", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.RNA-Seq.S14_L004_R2.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4348466857 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 79b04c28-861b-49c8-96d0-3deccc138236 7c2b634e47291234f8431254adc5b2f1 {"aliquot_tag": "ALQ_fba56b27", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.RNA-Seq.S8_L002_R1.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R1_001.fastq.gz 3655471469 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 74bd7423-bd88-4774-b5af-1969b53a8aa8 5c486172ade84e6975ff680338cc0181 {"aliquot_tag": "ALQ_567a5f06", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.RNA-Seq.S8_L002_R2.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R2_001.fastq.gz 4038026134 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 7b9fccf0-a718-492b-8698-8a72a2c2a719 cee817b6927a12926e2612fbfa049790 {"aliquot_tag": "ALQ_567a5f06", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.RNA-Seq.transcriptome.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.transcriptome.gdc_realn.bam 10047655932 BAM transcriptome harmonized CPTAC3 528f5269-049c-4961-a57d-bb950e877dc1 f627d34749d4fab3e55201e32b72a122 {"aliquot_tag": "ALQ_fba56b27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.RNA-Seq.transcriptome.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.transcriptome.gdc_realn.bam 9223491278 BAM transcriptome harmonized CPTAC3 010643ad-1652-49b8-98ec-3d034274423b d67dd6bf1d760b4da49044002e46522e {"aliquot_tag": "ALQ_567a5f06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.WGS.A C3L-01601 SAR WGS tissue_normal CPT0087130006 CPT0087130006.WholeGenome.RP-1303.bam 64370288294 BAM submitted_aligned CPTAC3 31f40d4f-2521-436e-a794-6f96f61b37b6 8111331e637c564e39b1b9669f9b85f6 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.WGS.A.hg38 C3L-01601 SAR WGS tissue_normal CPT0087130006 78f95fc8-6b51-4a22-936d-ed0ac5991af7_wgs_gdc_realn.bam 92673874222 BAM harmonized CPTAC3 11256f24-6f95-4715-80a0-ca88eddffeab d018c287df38c57ed1e1a3118b2bee95 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.WGS.N C3L-01601 SAR WGS blood_normal CPT0087470002 CPT0087470002.WholeGenome.RP-1303.bam 56631961543 BAM submitted_aligned CPTAC3 0c7ed95e-c127-4a49-bee7-0202bdc1213a 579a1764fd125537bbb8dc93781f10cb {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01601.WGS.N.hg38 C3L-01601 SAR WGS blood_normal CPT0087470002 4c1f1c41-8b18-463f-acfe-c56b9ce4892d_wgs_gdc_realn.bam 81162540030 BAM harmonized CPTAC3 f17aa749-8f0d-4a1e-90f8-2f0d84fe0855 9c082692792ec0eb35b1bd118d479712 {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01601.WGS.T C3L-01601 SAR WGS tumor CPT0087120009 CPT0087120009.WholeGenome.RP-1303.bam 64336308899 BAM submitted_aligned CPTAC3 f1fd1db6-e551-4dac-9d45-0a2de70928fe e579e871f07fcdc8cf689a9eba2805cb {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.WGS.T.hg38 C3L-01601 SAR WGS tumor CPT0087120009 08f3ad26-1794-4e19-afbf-a29ac219dd65_wgs_gdc_realn.bam 93772592784 BAM harmonized CPTAC3 c2a69d6b-b0c9-43ed-a333-fb2cae7a1980 efc3de1141d5e5155f1c9b2f63393d68 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.WXS.A C3L-01601 SAR WXS tissue_normal CPT0087130006 CPT0087130006.WholeExome.RP-1303.bam 28511767852 BAM submitted_aligned CPTAC3 24741d34-5f7c-4e95-b4da-d6667e17b774 cefae5d5cdbc7ee1a330d98b5a9ed988 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.WXS.A.hg38 C3L-01601 SAR WXS tissue_normal CPT0087130006 78f95fc8-6b51-4a22-936d-ed0ac5991af7_wxs_gdc_realn.bam 38656662117 BAM harmonized CPTAC3 e35a03ad-99ea-483a-9d5e-32d53fea0e8b 7245f0e89fab96d91e94f9d2a66730e3 {"aliquot_tag": "ALQ_6b1a76b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01601.WXS.N C3L-01601 SAR WXS blood_normal CPT0087470002 CPT0087470002.WholeExome.RP-1303.bam 33535947551 BAM submitted_aligned CPTAC3 8d537c6a-e9b0-4a16-a80d-c56a2f7f2af3 f4da5ce7aa10eae4c5d70960bb6734ce {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01601.WXS.N.hg38 C3L-01601 SAR WXS blood_normal CPT0087470002 4c1f1c41-8b18-463f-acfe-c56b9ce4892d_wxs_gdc_realn.bam 45336795504 BAM harmonized CPTAC3 16fd2f3b-4299-4029-81b0-c9f0dda771b9 1f347606cb27e78e40b5583de82bf0db {"aliquot_tag": "ALQ_c93a85dc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01601.WXS.T C3L-01601 SAR WXS tumor CPT0087120009 CPT0087120009.WholeExome.RP-1303.bam 38989719880 BAM submitted_aligned CPTAC3 656f74bc-11ec-49c9-9ea1-fdad3858cb3e 9e243448eafa28ffb316a3177d787cf0 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01601.WXS.T.hg38 C3L-01601 SAR WXS tumor CPT0087120009 08f3ad26-1794-4e19-afbf-a29ac219dd65_wxs_gdc_realn.bam 52315019689 BAM harmonized CPTAC3 838016fb-cc31-41b9-9e75-b89ba3ac6ea0 8e6b816170fc638730fc31b90e2196b6 {"aliquot_tag": "ALQ_c6c54297", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01603.DUP_30f9b882.MethArray.Green.T C3L-01603 CCRCC Methylation_Array tumor CPT0087030009 204372030139_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d5c255a4-c167-4b53-aec3-57d5847b3a42 d390266d7c78e689fdcd93d935ff134a {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_30f9b882.MethArray.Red.T C3L-01603 CCRCC Methylation_Array tumor CPT0087030009 204372030139_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 dc5276c9-1105-4c26-9645-666f288a0f06 d623322ce5dff565661c72eb4fc54b70 {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_30f9b882.WGS.T C3L-01603 CCRCC WGS tumor CPT0087030009 CPT0087030009.WholeGenome.RP-2158.bam 28365915469 BAM submitted_aligned CPTAC3 90ec5ffe-98b7-491f-bc3c-48275e6af3a5 86ea49ac9ab4723d7879b7b952f6337f {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_30f9b882.WGS.T.hg38 C3L-01603 CCRCC WGS tumor CPT0087030009 aaedabcc-7240-4ff3-91ed-4a68ff39c3c9_wgs_gdc_realn.bam 81926898476 BAM harmonized CPTAC3 574e9d8a-9f96-4111-84f9-b20009293f10 acdcf1c55ea82cede91ed6cd48a1e9f6 {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_30f9b882.WXS.T C3L-01603 CCRCC WXS tumor CPT0087030009 CPT0087030009.WholeExome.RP-1303.bam 25134536872 BAM submitted_aligned CPTAC3 06a293d4-4b40-43c7-8c8a-e1a7e8b4cb21 54c85c7b3bd9d49169145cee8e33e38b {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_30f9b882.WXS.T.hg38 C3L-01603 CCRCC WXS tumor CPT0087030009 aaedabcc-7240-4ff3-91ed-4a68ff39c3c9_wxs_gdc_realn.bam 35629788580 BAM harmonized CPTAC3 fd3812ba-d8e3-4fd2-a53c-6b51847f315e a44c39a3fdc26dc0c58a240b9c31886f {"aliquot_tag": "DUP_30f9b882", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_9d268ca3.miRNA-Seq.S16_L003_R1.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087020006 200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L003_R1_001.unaln.bam 384606700 BAM S16_L003_R1 submitted_unaligned CPTAC3 2b19c8c6-da19-4267-a82c-a2d1e5662c47 59489140551a5b400a599c83c9899a0b {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_9d268ca3.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087020006 0bcb4164-b4f9-44a5-b3bf-1fd03c033263_mirnaseq_gdc_realn.bam 427498345 BAM harmonized CPTAC3 95c24783-f0ce-462c-b0a8-789b74b60781 3469a82562a3fac48b8a9d8a8de1f338 {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_9d268ca3.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.chimeric.gdc_realn.bam 364215582 BAM chimeric harmonized CPTAC3 ee0f5d21-bc3c-4b68-a40d-47aa32943716 be6d6d805d88f60cca964c90117468fb {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_9d268ca3.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.genomic.gdc_realn.bam 7987420674 BAM genomic harmonized CPTAC3 66d0cb3f-8b8b-4147-87c3-39eb66ebc2c0 641034ccda33d62e90d0c67c2a5ebebd {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_9d268ca3.RNA-Seq.S21_L006_R1.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R1_001.fastq.gz 3934128919 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 cb95c513-52ca-4641-aa21-ee16ecb9bf76 f56386f3d8fb504aed1ac65158a68ee0 {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_9d268ca3.RNA-Seq.S21_L006_R2.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R2_001.fastq.gz 4490562842 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 dbfcd61d-13bd-434f-88f8-39a69e5c0460 8b19beb1eb3bfe6833994642280f021f {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_9d268ca3.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.transcriptome.gdc_realn.bam 9324220490 BAM transcriptome harmonized CPTAC3 3fe76094-046d-4278-85c4-22b527cd9a81 78b03da328882256d22017833eedd577 {"aliquot_tag": "DUP_9d268ca3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_a046a513.miRNA-Seq.S17_L003_R1.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087030006 200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L003_R1_001.unaln.bam 342183985 BAM S17_L003_R1 submitted_unaligned CPTAC3 d2f2dee4-4830-4dea-adfd-0c59e72eebd5 e1f8edecafef59b24174e3b094cdd3e1 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_a046a513.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087030006 f7f7bcd1-cbd2-402d-8190-57ec78f8bd44_mirnaseq_gdc_realn.bam 378581708 BAM harmonized CPTAC3 2f260463-6f6d-44e7-80f2-7004f5cac59d ae1f8fc40bcf69417cb618bbedf93f66 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_a046a513.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.chimeric.gdc_realn.bam 299806412 BAM chimeric harmonized CPTAC3 77bc937a-7d22-4491-ad45-2492cb49fa0f 454d1e7d0e9fb534c61d68a2781b3953 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_a046a513.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.genomic.gdc_realn.bam 7989861670 BAM genomic harmonized CPTAC3 6348e12d-44c3-4b85-8566-fd49c4352462 e60115da860e299d65d65212d8977419 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_a046a513.RNA-Seq.S24_L006_R1.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R1_001.fastq.gz 3759773869 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 8b099758-d7e9-4d93-8efb-f32ec126a22f 92d362c3dd39f1c97cef0f9fb74ce604 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_a046a513.RNA-Seq.S24_L006_R2.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R2_001.fastq.gz 4442281635 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 0d1f8769-7831-4527-9fad-7baeb5269902 a208dde55f923b1fe68b33769cd92021 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_a046a513.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.transcriptome.gdc_realn.bam 9884765044 BAM transcriptome harmonized CPTAC3 6c86fbd9-0579-442c-bbb4-bd45dd1e586b d602860fb3c218f9adc9b56016dd9122 {"aliquot_tag": "DUP_a046a513", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_d999132.MethArray.Green.T C3L-01603 CCRCC Methylation_Array tumor CPT0087020009 204367470132_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 027f2f66-c51f-4876-9234-8c39721c605a f134a683d4f790e2e9494047664b89a1 {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_d999132.MethArray.Red.T C3L-01603 CCRCC Methylation_Array tumor CPT0087020009 204367470132_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 3c154978-4a64-4756-add3-4600afc99de0 a227e27fa39ae3ca8eb5399e1a660276 {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_d999132.WGS.T C3L-01603 CCRCC WGS tumor CPT0087020009 CPT0087020009.WholeGenome.RP-2158.bam 20633584429 BAM submitted_aligned CPTAC3 6cbef3a9-bcee-43e0-abe2-ff4a07deac53 50663d307a4de4f6c2767e93ba2085b9 {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_d999132.WGS.T.hg38 C3L-01603 CCRCC WGS tumor CPT0087020009 9be1846a-7ec6-4fa3-861e-5505d3402179_wgs_gdc_realn.bam 59066720417 BAM harmonized CPTAC3 2ec7bdd1-cad3-4f0c-939c-474457ac5aee f0e7247352e9b51083a7d2359c2384ea {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_d999132.WXS.T C3L-01603 CCRCC WXS tumor CPT0087020009 CPT0087020009.WholeExome.RP-1303.bam 21348531179 BAM submitted_aligned CPTAC3 e5e31d36-6c04-4fbf-b38c-f1faaa13f39b 3ec8036a10927808f381667f65055bae {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.DUP_d999132.WXS.T.hg38 C3L-01603 CCRCC WXS tumor CPT0087020009 9be1846a-7ec6-4fa3-861e-5505d3402179_wxs_gdc_realn.bam 29546693577 BAM harmonized CPTAC3 25660fe8-ec5f-4e50-9045-d142648e35e7 0d38e9623d8d732fecb5da8a4090309a {"aliquot_tag": "DUP_d999132", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.MethArray.Green.A C3L-01603 CCRCC Methylation_Array tissue_normal CPT0087050009 204930640108_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99446ba5-7827-4e5c-a46a-6a9a326da2dd b1ea65840db52a4e976aa70a768a9d3a {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.MethArray.Green.T C3L-01603 CCRCC Methylation_Array tumor CPT0087040009 202176290095_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 87caae1f-10fc-44a8-9331-584b73ab0f61 efd3e7e298f1928c6743c03ecdc2cfac {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.MethArray.Red.A C3L-01603 CCRCC Methylation_Array tissue_normal CPT0087050009 204930640108_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 279e831b-cf56-4e34-8e59-777cf1315a96 f9a897dd98d2a23d9527572577b4c6dc {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.MethArray.Red.T C3L-01603 CCRCC Methylation_Array tumor CPT0087040009 202176290095_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6e142cb4-4c18-4900-ae6d-e05c1a5403db 6c737dfd5913fa7e3657b4f5b94d2d71 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.miRNA-Seq.A.hg38 C3L-01603 CCRCC miRNA-Seq tissue_normal CPT0087050006 fcd433c7-1b54-4b52-b566-50a0983a1810_mirnaseq_gdc_realn.bam 188004296 BAM harmonized CPTAC3 276d592b-8cd8-46f6-8405-5628d7621c30 392d3de278fce660fa5a09c8a030f0b5 {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.miRNA-Seq.S15_L008_R1.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087040006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L008_R1_001.unaln.bam 215307960 BAM S15_L008_R1 submitted_unaligned CPTAC3 c2952661-cc69-4792-870f-e15cef2ddfb4 4bada8e95e570997aa9d5096a9b13516 {"aliquot_tag": "ALQ_12667903", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.miRNA-Seq.S17_L005_R1.A C3L-01603 CCRCC miRNA-Seq tissue_normal CPT0087050006 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L005_R1_001.unaln.bam 163344795 BAM S17_L005_R1 submitted_unaligned CPTAC3 4a2a5ef9-7b5c-4386-8c59-078df6b4d8ae 400ee91f3ca3b40658fedbd06d6b3095 {"aliquot_tag": "ALQ_2f0650b3", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087040006 99d67dc7-cbc4-4b62-a36f-73ef4819de16_mirnaseq_gdc_realn.bam 237606656 BAM harmonized CPTAC3 2e5f44ac-d682-4d51-a436-4647f8a0a67f b9214798234cf374674f1edf2cef51e9 {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.RNA-Seq.chimeric.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.chimeric.gdc_realn.bam 90081201 BAM chimeric harmonized CPTAC3 8f41e2eb-892b-4c05-bdf2-59aa9ee24538 eaccd3fb9e764d5d2cbbf33b3cefbb5d {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.chimeric.gdc_realn.bam 33819771 BAM chimeric harmonized CPTAC3 dd0be843-5aa8-4a2b-902b-2cceeffdbc98 68ea749895fa8ab0478f8ebd25977858 {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.RNA-Seq.genomic.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.genomic.gdc_realn.bam 9736260643 BAM genomic harmonized CPTAC3 e6cbaffc-d26d-44a9-800e-5642fad52678 5ebaf3b36a9c48f2f8d4bc5522e4c645 {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.genomic.gdc_realn.bam 6788163686 BAM genomic harmonized CPTAC3 51b8cd08-4b69-4563-86c4-398312b917d6 546b3fd65949d50ded4373b5577c89ca {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.RNA-Seq.S15_L005_R1.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R1_001.fastq.gz 3431472766 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 2fec763c-44ca-4f62-ac76-cf3f28d272c4 2a77623a01dd9519ecd8789144a45ce1 {"aliquot_tag": "ALQ_12667903", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.RNA-Seq.S15_L005_R2.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R2_001.fastq.gz 3674265253 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 d09aa237-4266-4f20-b503-82f401998031 64ed16d58ca5fd37c3ffb016bc78e833 {"aliquot_tag": "ALQ_12667903", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.RNA-Seq.S7_L002_R1.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R1_001.fastq.gz 4805210218 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 e138348f-c1aa-4865-a8bc-1784557a4f89 b78996c2974732454a71b01d0bbc3993 {"aliquot_tag": "ALQ_2f0650b3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.RNA-Seq.S7_L002_R2.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R2_001.fastq.gz 5008820276 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 23bf8a0e-ebc4-4f6a-978f-a04a170d9979 d914b98c27bc4ffb723f619c6e34f5ee {"aliquot_tag": "ALQ_2f0650b3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.RNA-Seq.transcriptome.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.transcriptome.gdc_realn.bam 11969381174 BAM transcriptome harmonized CPTAC3 d2a7d806-0c48-4784-b8a9-1bee7db7ca9a a5529929ea6fb2525da14c0d14d231df {"aliquot_tag": "ALQ_2f0650b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.transcriptome.gdc_realn.bam 9765004309 BAM transcriptome harmonized CPTAC3 3299a8ff-578a-4d77-b479-83dc462a0ded bb5352e04e1a99cc026fdba81a3b3e97 {"aliquot_tag": "ALQ_12667903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.WGS.A C3L-01603 CCRCC WGS tissue_normal CPT0087050009 CPT0087050009.WholeGenome.RP-1303.bam 55672970227 BAM submitted_aligned CPTAC3 8e2132c0-346c-4a09-8519-6550d31b072e be9d4a19a5590a71cced5166f2b7a8ec {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.WGS.A.hg38 C3L-01603 CCRCC WGS tissue_normal CPT0087050009 92c6bca3-e903-4b6a-b994-b4711ebbf5ba_wgs_gdc_realn.bam 81779110488 BAM harmonized CPTAC3 937cbe61-83ec-4f78-9e9c-d93772b6ce40 19df8d8aa63b8f9c0e3d2d14bf0be4af {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.WGS.N C3L-01603 CCRCC WGS blood_normal CPT0087460001 CPT0087460001.WholeGenome.RP-1303.bam 61997537192 BAM submitted_aligned CPTAC3 0e14e638-9360-48b6-a696-f3cf51de4667 f348d17952e4c9c79d57a6f9dc147371 {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01603.WGS.N.hg38 C3L-01603 CCRCC WGS blood_normal CPT0087460001 0bf76841-56c0-4d7b-9ac8-404463eebb19_gdc_realn.bam 93459821358 BAM harmonized CPTAC3 a7d95b1a-7ca4-4ebf-8439-976b8f1e2191 896d1373a17d001189538da11c7bbe9d {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01603.WGS.T C3L-01603 CCRCC WGS tumor CPT0087040009 CPT0087040009.WholeGenome.RP-1303.bam 66225313479 BAM submitted_aligned CPTAC3 0983c22e-89ef-4790-a0bd-4a14fa4ec2c1 b469854ed51185857c74a50c7eaa0600 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.WGS.T.hg38 C3L-01603 CCRCC WGS tumor CPT0087040009 68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 99249775539 BAM harmonized CPTAC3 0f347105-b500-4cdd-8a0e-d931f4a6b999 df7698c8bc12a7d2486e4a464ee22f54 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.WXS.A C3L-01603 CCRCC WXS tissue_normal CPT0087050009 CPT0087050009.WholeExome.RP-1303.bam 26634202131 BAM submitted_aligned CPTAC3 41ca9931-a7fc-4dd1-b1bc-3c5fd9d7ac2a cbfc4c8ca0fa7890d997abe8c70036f4 {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.WXS.A.hg38 C3L-01603 CCRCC WXS tissue_normal CPT0087050009 92c6bca3-e903-4b6a-b994-b4711ebbf5ba_wxs_gdc_realn.bam 36443694772 BAM harmonized CPTAC3 78d90952-0702-4498-babd-304a8883bc65 9f6a2d5431c541b6f661ed6527490c89 {"aliquot_tag": "ALQ_bfb94d22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01603.WXS.N C3L-01603 CCRCC WXS blood_normal CPT0087460001 CPT0087460001.WholeExome.RP-1303.bam 33839393409 BAM submitted_aligned CPTAC3 7aba65f0-d3c6-4f7b-8a1f-74aa7c88a6ea 89fec373e24c2670fe747f6c743a0353 {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01603.WXS.N.hg38 C3L-01603 CCRCC WXS blood_normal CPT0087460001 0bf76841-56c0-4d7b-9ac8-404463eebb19_gdc_realn.bam 47249064201 BAM harmonized CPTAC3 dc692a2f-c698-4e56-a99c-4de2ab303ec1 21934223cbd08bf8d042803c2db8e7ab {"aliquot_tag": "ALQ_6d53fdd6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01603.WXS.T C3L-01603 CCRCC WXS tumor CPT0087040009 CPT0087040009.WholeExome.RP-1303.bam 47255286396 BAM submitted_aligned CPTAC3 4d240691-aab4-46d5-bb2f-77628dea885b 5db289b37fdcb98517e8e6c6fc688a59 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01603.WXS.T.hg38 C3L-01603 CCRCC WXS tumor CPT0087040009 68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 65921297500 BAM harmonized CPTAC3 9cf6e0c1-e777-4ca3-b956-07947dce8216 1e88d381a9c082b9cab126fd0f16f276 {"aliquot_tag": "ALQ_82d96492", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.MethArray.Green.A C3L-01606 LSCC Methylation_Array tissue_normal CPT0086270006 203219650004_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 532023b2-776a-4ec7-817f-cf2da8e4b73d 2ec37c99153e1ff0d3c3fd759865d9df {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.MethArray.Green.T C3L-01606 LSCC Methylation_Array tumor CPT0086260009 202234380064_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7dd8d9c3-640e-4222-844f-887078a86084 ecee926d810ef9fd00e08d77ff388dbf {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.MethArray.Red.A C3L-01606 LSCC Methylation_Array tissue_normal CPT0086270006 203219650004_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 fd2a3cc2-4213-4313-b576-cc14025e48b1 6fb36fb494ebb775493bdafec6058678 {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.MethArray.Red.T C3L-01606 LSCC Methylation_Array tumor CPT0086260009 202234380064_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 842f72fd-fdb1-4c0e-94e2-fe8fc4197b62 83b88f8dd2669bb079669f22f4ec221d {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.miRNA-Seq.A.hg38 C3L-01606 LSCC miRNA-Seq tissue_normal CPT0086270009 af87779b-f1be-4969-be76-8c39a570fb75_mirnaseq_gdc_realn.bam 287805965 BAM harmonized CPTAC3 d2c5a0ca-2f58-427f-9c70-4dc27dc54cdc 280d2ce7215b89dfad42ba8a55db9094 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.miRNA-Seq.S35_L008_R1.T C3L-01606 LSCC miRNA-Seq tumor CPT0086260006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTTGTA_S35_L008_R1_001.unaln.bam 237276803 BAM S35_L008_R1 submitted_unaligned CPTAC3 2eaa4d32-0807-4b41-a0c1-da6a63f5e21e 6d850eeff40f8a3f7051965b952c2e31 {"aliquot_tag": "ALQ_831980dc", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.miRNA-Seq.S43_L006_R1.A C3L-01606 LSCC miRNA-Seq tissue_normal CPT0086270009 181113_UNC31-K00269_0164_AH23NNBBXY_GTGAAA_S43_L006_R1_001.unaln.bam 256671741 BAM S43_L006_R1 submitted_unaligned CPTAC3 d4416694-7a82-413e-916d-6a8ef57254b9 d63a1f68145049ec51105f04be823fb9 {"aliquot_tag": "ALQ_2ec6b4fd", "sample": "S43", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.miRNA-Seq.T.hg38 C3L-01606 LSCC miRNA-Seq tumor CPT0086260006 f966dbf7-37a2-4484-ad14-d3af77efa634_mirnaseq_gdc_realn.bam 253899386 BAM harmonized CPTAC3 16174d89-5ba0-44e7-b183-550c2a23f894 79fc73c3db914fbc5ed47c88b75a3e94 {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.RNA-Seq.chimeric.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.chimeric.gdc_realn.bam 68104428 BAM chimeric harmonized CPTAC3 431751d3-009c-4e46-b77f-603184b4e08b c8a80206945be970442ee7ffeba63608 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.RNA-Seq.chimeric.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.chimeric.gdc_realn.bam 49434752 BAM chimeric harmonized CPTAC3 140454bd-9b93-473f-8dee-5009aea3778e 0f7089906935e901f2958a484f41a544 {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.RNA-Seq.genomic.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.genomic.gdc_realn.bam 13213850824 BAM genomic harmonized CPTAC3 3acae410-e9ea-43dd-94fa-99be8461fe43 8296ad0e45f867c87b5bf8fcad32bc57 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.RNA-Seq.genomic.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.genomic.gdc_realn.bam 7864484823 BAM genomic harmonized CPTAC3 e9dfed0c-8b6a-48ef-bfd5-31633e3eaf32 f0dcd0df7f5d454e2300ae0366cf29cf {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.RNA-Seq.S10_L003_R1.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 5799637191 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 1931113f-9002-4201-ad55-f44a17b154c9 49ee978274a24c04fb493077ec3e45b8 {"aliquot_tag": "ALQ_2ec6b4fd", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.RNA-Seq.S10_L003_R2.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 6356112632 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 9b575cdb-efc4-4b96-8ff9-7554429c7731 15a060e8801c4146d85868b514cbba54 {"aliquot_tag": "ALQ_2ec6b4fd", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.RNA-Seq.S12_L003_R1.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3687206451 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 528c9b3b-16a5-43b4-b247-d51421959853 2766cdc423074162385abefccb1796e9 {"aliquot_tag": "ALQ_831980dc", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.RNA-Seq.S12_L003_R2.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 4081591925 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 e741edb3-6ff0-457f-9cbe-4de09b7919f7 0e3c8008716009ea58bb0278c58c9575 {"aliquot_tag": "ALQ_831980dc", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.RNA-Seq.transcriptome.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.transcriptome.gdc_realn.bam 15342947586 BAM transcriptome harmonized CPTAC3 6ac96a4e-fdae-4280-891d-2448ec5a2e01 56288463329be6e79bf5cdf52ece9d94 {"aliquot_tag": "ALQ_2ec6b4fd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.RNA-Seq.transcriptome.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.transcriptome.gdc_realn.bam 9073473362 BAM transcriptome harmonized CPTAC3 214cefdd-5fd7-4ec2-ba6a-00dbf3f9b9b4 defe0346e67def904253f2920dc04ff7 {"aliquot_tag": "ALQ_831980dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.WGS.A C3L-01606 LSCC WGS tissue_normal CPT0086270006 CPT0086270006.WholeGenome.RP-1303.bam 53290753540 BAM submitted_aligned CPTAC3 27312ecd-da82-4fc6-8d47-f7b99851071c 7109f25120b550e320fdd1c84fcc47cf {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.WGS.A.hg38 C3L-01606 LSCC WGS tissue_normal CPT0086270006 1a00f5ef-418f-466c-a02c-3fd5f9af96ac_wgs_gdc_realn.bam 77494669498 BAM harmonized CPTAC3 e0d9c5d2-44de-42f7-b2b0-69ac2f7d7b64 75412ef999cff4abedfeaae47ce5080c {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.WGS.N C3L-01606 LSCC WGS blood_normal CPT0087360002 CPT0087360002.WholeGenome.RP-1303.bam 64729368137 BAM submitted_aligned CPTAC3 311bb059-814e-4785-8719-63895e8a02a2 44d2f7af87962ca293576519b4da6766 {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01606.WGS.N.hg38 C3L-01606 LSCC WGS blood_normal CPT0087360002 14f61799-01e6-4bc3-8da4-8d52b448bdaf_wgs_gdc_realn.bam 94768225643 BAM harmonized CPTAC3 44226526-d229-4949-9534-14dc2e600f7d 0aab006010a60a60bce78aa8d7e96018 {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01606.WGS.T C3L-01606 LSCC WGS tumor CPT0086260009 CPT0086260009.WholeGenome.RP-1303.bam 66557006353 BAM submitted_aligned CPTAC3 85e46f96-962e-47dd-a638-e43ce35e9b74 bf735d4e28d495a226cded13801ccecb {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.WGS.T.hg38 C3L-01606 LSCC WGS tumor CPT0086260009 ae2ea600-3419-45eb-a7cc-e397a4f13e2e_wgs_gdc_realn.bam 96237422798 BAM harmonized CPTAC3 1549df6f-6d6c-472b-b597-a5b04336b9d1 ecda8e7ae7c8b9c9ecff7679daac3d5f {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.WXS.A C3L-01606 LSCC WXS tissue_normal CPT0086270006 CPT0086270006.WholeExome.RP-1303.bam 30700626776 BAM submitted_aligned CPTAC3 b2baea8e-53da-4d3b-ad0b-6a00069eb853 bf9e5131f3b14342186f22240ffbf587 {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.WXS.A.hg38 C3L-01606 LSCC WXS tissue_normal CPT0086270006 1a00f5ef-418f-466c-a02c-3fd5f9af96ac_wxs_gdc_realn.bam 40925187576 BAM harmonized CPTAC3 9c5754ff-1b55-40e6-bacc-5fabb58aa7c5 a7978d77cb67ba026df017c0554f1435 {"aliquot_tag": "ALQ_be79a96c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01606.WXS.N C3L-01606 LSCC WXS blood_normal CPT0087360002 CPT0087360002.WholeExome.RP-1303.bam 30049030554 BAM submitted_aligned CPTAC3 d30c8360-0ac2-4195-b643-b6b8066a9f93 5d1a86f707e09e01dcb2104deff4924e {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01606.WXS.N.hg38 C3L-01606 LSCC WXS blood_normal CPT0087360002 14f61799-01e6-4bc3-8da4-8d52b448bdaf_wxs_gdc_realn.bam 40451984185 BAM harmonized CPTAC3 ba67c547-f229-44c3-b97d-8a8caea30e47 37816d2783380e7a9c57a5970b3ebbe9 {"aliquot_tag": "ALQ_e95f9cd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01606.WXS.T C3L-01606 LSCC WXS tumor CPT0086260009 CPT0086260009.WholeExome.RP-1303.bam 31391267209 BAM submitted_aligned CPTAC3 13b8c9b1-6cf8-4915-ae94-3fce0f3c09e7 df5513a4bedaeb43e9586b5b053d0dd7 {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01606.WXS.T.hg38 C3L-01606 LSCC WXS tumor CPT0086260009 ae2ea600-3419-45eb-a7cc-e397a4f13e2e_wxs_gdc_realn.bam 42392754674 BAM harmonized CPTAC3 6cef75a3-5204-4914-948c-673047273d59 7148ae4f25752282e10de9de3ee863af {"aliquot_tag": "ALQ_13a69d4d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.ANN_add7cb6e.MethArray.Green.T C3L-01607 CCRCC Methylation_Array tumor CPT0092160009 202234380069_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f2629a18-c437-4c62-9f0f-f1c0ddd24ca1 2b2ee282b495ac554a2c50c37af09232 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.ANN_add7cb6e.MethArray.Red.T C3L-01607 CCRCC Methylation_Array tumor CPT0092160009 202234380069_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 35c3fd9f-2b85-478a-b539-0d15519c3b73 ec40e145910d41e33776dd948277cb41 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.ANN_add7cb6e.WGS.T C3L-01607 CCRCC WGS tumor CPT0092160009 CPT0092160009.WholeGenome.RP-1303.bam 58074331772 BAM submitted_aligned CPTAC3 c3a0dc8e-2b96-4e3d-949a-26248bb322ca 53e933a5073647ae08e3b6553a7c13d3 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.ANN_add7cb6e.WGS.T.hg38 C3L-01607 CCRCC WGS tumor CPT0092160009 0787b6cc-fab1-4c71-8db6-10d6093ce29d_wgs_gdc_realn.bam 85641289703 BAM harmonized CPTAC3 baf65777-56c8-40be-a13d-b74c6fa34388 554b3e997f19a57a5b8e0b4b97b30284 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.ANN_add7cb6e.WXS.T C3L-01607 CCRCC WXS tumor CPT0092160009 CPT0092160009.WholeExome.RP-1303.bam 33833188091 BAM submitted_aligned CPTAC3 16b4ad52-019f-45b8-af82-cf884e1421dd 7e3d9e7d1f5f981f227baecbfe7325a9 {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.ANN_add7cb6e.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092160009 0787b6cc-fab1-4c71-8db6-10d6093ce29d_wxs_gdc_realn.bam 46732242259 BAM harmonized CPTAC3 78055e79-e0e9-4a8d-989f-1c30f31745cd dc9b4d279ba71377e1bbd9d4812b6ead {"aliquot_tag": "ANN_add7cb6e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_12e7750f.MethArray.Green.T C3L-01607 CCRCC Methylation_Array tumor CPT0092180009 204367470131_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 80a96047-b286-4d7e-aebb-66788fe9b08b 3fd94b17cb3d0ef7d7c4b7c2ce5d8bda {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_12e7750f.MethArray.Red.T C3L-01607 CCRCC Methylation_Array tumor CPT0092180009 204367470131_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 b821d0f1-413f-45ce-a27d-da8c0a283ca2 813fb5718554e37fb02ffda4a1d13233 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_12e7750f.WGS.T C3L-01607 CCRCC WGS tumor CPT0092180009 CPT0092180009.WholeGenome.RP-2158.bam 28531084531 BAM submitted_aligned CPTAC3 8eae0546-2d83-40c9-897c-fdcec1250fb1 c40cbc85b3dd9e66353d7368f52c04bd {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_12e7750f.WGS.T.hg38 C3L-01607 CCRCC WGS tumor CPT0092180009 9a22a752-6b30-46f1-82b8-65d20b385a02_wgs_gdc_realn.bam 83711726608 BAM harmonized CPTAC3 cb9be0a8-2f2f-42d0-9f2b-da90d9b56abc 7e4f188250e22fc450795d0df67b2291 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_12e7750f.WXS.T C3L-01607 CCRCC WXS tumor CPT0092180009 CPT0092180009.WholeExome.RP-1303.bam 24306445394 BAM submitted_aligned CPTAC3 830cee91-b9a4-4798-ab66-9997ea42afaa e87f0cee5c45640d2430c575a2084019 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_12e7750f.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092180009 9a22a752-6b30-46f1-82b8-65d20b385a02_wxs_gdc_realn.bam 33253902428 BAM harmonized CPTAC3 1b7bab7c-3042-407d-a4c5-7e9dc15add88 ff09e09f89631623a24391a602f1edb5 {"aliquot_tag": "DUP_12e7750f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_8ff4f.miRNA-Seq.S18_L003_R1.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092170006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCATTC_S18_L003_R1_001.unaln.bam 289966674 BAM S18_L003_R1 submitted_unaligned CPTAC3 3fd361a6-5a7d-45f9-bea2-45fdce426b5d d488f18e64dead8901de6383750cc1eb {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_8ff4f.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092170006 a8f0aa9e-bac0-4c1e-9cfe-561107c699ef_mirnaseq_gdc_realn.bam 322983752 BAM harmonized CPTAC3 45cdfd0b-c214-454c-a16e-71bb1cb1a411 97e1d3501d102a9e510b9a645d27a6a8 {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_8ff4f.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.chimeric.gdc_realn.bam 251117851 BAM chimeric harmonized CPTAC3 b3be073a-1dfc-457f-ba86-a6c943163f84 ebd40a764dfbd62d880e7cb17c4ccb7b {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_8ff4f.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.genomic.gdc_realn.bam 7339179496 BAM genomic harmonized CPTAC3 6fcffcdb-798f-45f6-962b-f019488244c8 9415506a3aae32c03194b0ccf3108d8c {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_8ff4f.RNA-Seq.S26_L007_R1.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R1_001.fastq.gz 3424823977 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 d7b825fc-a5a5-415e-bd76-2356d4df3d64 41c50f86e6ebcf768515e24c08a75a60 {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_8ff4f.RNA-Seq.S26_L007_R2.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R2_001.fastq.gz 4061944604 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 fc584b2b-cb19-41da-a8bd-fe57c972f412 1f5f4e75bdc1b2690a7aa502a8e687e3 {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_8ff4f.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.transcriptome.gdc_realn.bam 8818792404 BAM transcriptome harmonized CPTAC3 ef4bd076-568b-456d-a282-db0584dee055 9204fb04f9521750af2e54601c04665d {"aliquot_tag": "DUP_8ff4f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_90b7e2de.MethArray.Green.T C3L-01607 CCRCC Methylation_Array tumor CPT0092170009 204372030071_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 6a552b5f-0ba7-4469-a729-981ce12973bc 17aae55469e47ecfe65d831d255b27d5 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_90b7e2de.MethArray.Red.T C3L-01607 CCRCC Methylation_Array tumor CPT0092170009 204372030071_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 4b5e8dc3-a4ee-4066-9c3a-06502aa123a2 a0ee2bb9b8830104f090aef70b5c1250 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_90b7e2de.WGS.T C3L-01607 CCRCC WGS tumor CPT0092170009 CPT0092170009.WholeGenome.RP-2158.bam 27883544958 BAM submitted_aligned CPTAC3 2b865606-d10c-46fd-af6a-a6cb6b4878c1 495173a5debc66679ebabd3220900cc1 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_90b7e2de.WGS.T.hg38 C3L-01607 CCRCC WGS tumor CPT0092170009 6374c0d5-ac85-4991-98c8-b1cc0c3160f2_wgs_gdc_realn.bam 80388252737 BAM harmonized CPTAC3 9b270c4c-4dca-4ca5-9775-3dc642e2a249 57196301cc0beb3bac0330bae2a578bf {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_90b7e2de.WXS.T C3L-01607 CCRCC WXS tumor CPT0092170009 CPT0092170009.WholeExome.RP-1303.bam 24010665875 BAM submitted_aligned CPTAC3 63adb4cd-ded6-405b-8aea-373f6f498595 3aae08ea7d8922f6782dc6dca5402118 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_90b7e2de.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092170009 6374c0d5-ac85-4991-98c8-b1cc0c3160f2_wxs_gdc_realn.bam 32449558479 BAM harmonized CPTAC3 27fecece-21f4-4ac6-a9ce-f528c514f6ac c7ddbe51b61be50082e1596bc99de3f5 {"aliquot_tag": "DUP_90b7e2de", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_eb29ad50.miRNA-Seq.S17_L001_R1.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092180013 200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L001_R1_001.unaln.bam 209689675 BAM S17_L001_R1 submitted_unaligned CPTAC3 9a4d4eab-a784-41bc-af14-9f222a157562 f30b3b172328e96bd7a2dd8e5bd3fdae {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_eb29ad50.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092180013 32a27a3c-e117-4113-a61c-700353fa31ee_mirnaseq_gdc_realn.bam 235840984 BAM harmonized CPTAC3 45f1077a-9184-48a9-b14b-4b8d5ea99a16 ee6832e71cbca027c91f8fcab6740e2e {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_eb29ad50.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.chimeric.gdc_realn.bam 56427916 BAM chimeric harmonized CPTAC3 4ceb66af-fb92-444a-a211-9c027df5adc9 0bf66247f8363211a7b70d4a98e77248 {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_eb29ad50.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.genomic.gdc_realn.bam 8938712235 BAM genomic harmonized CPTAC3 16b85f10-a4da-47d3-be5e-15baca5c1057 6f5651f3ee80c57701d49c5545ceac5a {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_eb29ad50.RNA-Seq.S4_L001_R1.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R1_001.fastq.gz 4209730181 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 e028725b-d0c9-4181-8f50-fd1c079da914 4383ded30dc76421e5a4c844782c60bc {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_eb29ad50.RNA-Seq.S4_L001_R2.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R2_001.fastq.gz 5046398238 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 5613d162-73a9-4540-9011-1d9ae35f221d f6e0ace8886ef6d64e8b4e08718f6066 {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.DUP_eb29ad50.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.transcriptome.gdc_realn.bam 12406412615 BAM transcriptome harmonized CPTAC3 6468f73f-e77e-40ec-a78c-73fd506e5732 457f0e8766028b158e35654370d42ce2 {"aliquot_tag": "DUP_eb29ad50", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.MethArray.Green.A C3L-01607 CCRCC Methylation_Array tissue_normal CPT0092190013 204930630078_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 853bc0e7-3685-4de3-9b7a-cba250a37598 e835313cfed0886b486593a99352da7c {"aliquot_tag": "ALQ_d64984e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.MethArray.Red.A C3L-01607 CCRCC Methylation_Array tissue_normal CPT0092190013 204930630078_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 b8a339b9-6c5b-4db4-8a20-8552ba81718c 8ba8efc7d6b6c45cfbf49020303e3bd6 {"aliquot_tag": "ALQ_d64984e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.miRNA-Seq.A.hg38 C3L-01607 CCRCC miRNA-Seq tissue_normal CPT0092190006 64c8338f-f7fa-498c-83e0-a88a38ff2966_mirnaseq_gdc_realn.bam 219474974 BAM harmonized CPTAC3 c2f94ba3-1f47-4ae6-a4d2-d642b79c675c 1367c412424ce8ae73c8a936c82b824d {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.miRNA-Seq.S18_L005_R1.A C3L-01607 CCRCC miRNA-Seq tissue_normal CPT0092190006 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L005_R1_001.unaln.bam 193654998 BAM S18_L005_R1 submitted_unaligned CPTAC3 6c77cf2f-97e5-4465-91cb-c70d5b2e6dd6 25b8ea5f1d61c9ed7900df460ad1d997 {"aliquot_tag": "ALQ_bf38412e", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.miRNA-Seq.S7_L007_R1.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092160006 180724_UNC32-K00270_0106_BHWK3MBBXX_CACGAT_S7_L007_R1_001.unaln.bam 258690073 BAM S7_L007_R1 submitted_unaligned CPTAC3 2d5021e4-fbff-4675-9d3d-13b676f53324 636e5b0329300aa8c5b847335d200f75 {"aliquot_tag": "ALQ_3d68d6ff", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092160006 c856b4cb-1fe4-4390-9158-a520a64b47e8_mirnaseq_gdc_realn.bam 278056745 BAM harmonized CPTAC3 c207fcab-e82e-46cb-a603-ecb0798bee61 5094da17f3bbc4db5c3c5150864855f9 {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.RNA-Seq.chimeric.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.chimeric.gdc_realn.bam 74029524 BAM chimeric harmonized CPTAC3 8e1b3c27-b517-4472-98d2-03818b5da016 b14f0b1fb13b65202895b666162c4229 {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.chimeric.gdc_realn.bam 52200658 BAM chimeric harmonized CPTAC3 3313853c-bd8a-40fb-9490-9b7b52c642fc 81b5847310591108ae7423b6b1097ed6 {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.RNA-Seq.genomic.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.genomic.gdc_realn.bam 8936840514 BAM genomic harmonized CPTAC3 fd4a3d86-92f3-4842-9ee7-ed69ec93d0f2 d875092aa76563186a331285a4181f9c {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.genomic.gdc_realn.bam 9458200955 BAM genomic harmonized CPTAC3 1366de85-d946-4fc8-96ad-9b0dfbc7b3de fbcd9407a6b997678e0fe46cc96aa052 {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.RNA-Seq.S1_L006_R1.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R1_001.fastq.gz 4333613798 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 0cca5899-0e8e-48ad-86dd-613e61876cc8 65720f28e278fac21ca213bfcca00a30 {"aliquot_tag": "ALQ_3d68d6ff", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.RNA-Seq.S1_L006_R2.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R2_001.fastq.gz 4832978770 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 ce2ab1d4-c67d-4eed-9a1a-66e753edff5b b9fe0d53ed8adcf4d869080224e7f7fc {"aliquot_tag": "ALQ_3d68d6ff", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.RNA-Seq.S3_L001_R1.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R1_001.fastq.gz 4412072551 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 6c109f03-8177-45d3-a4a2-f19074ee4ed6 ebab80ce522598c42e935cac7151baa6 {"aliquot_tag": "ALQ_bf38412e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.RNA-Seq.S3_L001_R2.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R2_001.fastq.gz 4324449781 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 8c20a402-e741-42c8-9f58-d50da87cef25 1d6db40d0d4da9d28e097406d4000d1b {"aliquot_tag": "ALQ_bf38412e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.RNA-Seq.transcriptome.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.transcriptome.gdc_realn.bam 10707839341 BAM transcriptome harmonized CPTAC3 da0435a2-0d93-4a66-9d52-f9de2ca38133 78d2d467f8198804fbce8480de295279 {"aliquot_tag": "ALQ_bf38412e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.transcriptome.gdc_realn.bam 10636384156 BAM transcriptome harmonized CPTAC3 05eb2c95-329c-4d9b-a8ee-72d991eb000f f58ea6b915530f4d50b9d3097c680bec {"aliquot_tag": "ALQ_3d68d6ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01607.WGS.A C3L-01607 CCRCC WGS tissue_normal CPT0092190009 CPT0092190009.WholeGenome.RP-1303.bam 67316449992 BAM submitted_aligned CPTAC3 f01f2bf7-452f-4cbe-bf9d-dff68e34d85b abaa019e8fca4f995cdedfa95d595cf9 {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.WGS.A.hg38 C3L-01607 CCRCC WGS tissue_normal CPT0092190009 db922bd9-8bd7-408d-b971-bdafbf4a08ce_wgs_gdc_realn.bam 99501129833 BAM harmonized CPTAC3 4c725d63-9de7-4561-b68b-9ad43f8d16a5 64a907828008321f56f4aaaf25654f91 {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.WGS.N C3L-01607 CCRCC WGS blood_normal CPT0093750002 CPT0093750002.WholeGenome.RP-1303.bam 67868807508 BAM submitted_aligned CPTAC3 3249ca0d-16ec-4691-8fe4-9d63c59df5d7 3443a22b50b837331766eb090d7b4aa1 {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01607.WGS.N.hg38 C3L-01607 CCRCC WGS blood_normal CPT0093750002 2986b7c9-3b40-46f8-a85a-4160c153fb79_wgs_gdc_realn.bam 99746668230 BAM harmonized CPTAC3 7192e800-b3ae-4f0b-9bf1-f5ecd0e6fa51 081e9d078029ca790a6aa8bba225b15f {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01607.WXS.A C3L-01607 CCRCC WXS tissue_normal CPT0092190009 CPT0092190009.WholeExome.RP-1303.bam 47923394079 BAM submitted_aligned CPTAC3 4350688c-c085-4797-aa45-e72166263108 71f4000a70d64e4560cb3a417c34bd42 {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.WXS.A.hg38 C3L-01607 CCRCC WXS tissue_normal CPT0092190009 db922bd9-8bd7-408d-b971-bdafbf4a08ce_wxs_gdc_realn.bam 64759989249 BAM harmonized CPTAC3 d58995c2-6ee3-4c19-992f-94c236ece00d f88af4842e364280c37edfdab893fa8f {"aliquot_tag": "ALQ_2f875cbf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01607.WXS.N C3L-01607 CCRCC WXS blood_normal CPT0093750002 CPT0093750002.WholeExome.RP-1303.bam 33070394038 BAM submitted_aligned CPTAC3 ef20087f-66d0-4768-9c24-e6e6f40f8002 8073031393d1bcc08341053a81c82421 {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01607.WXS.N.hg38 C3L-01607 CCRCC WXS blood_normal CPT0093750002 2986b7c9-3b40-46f8-a85a-4160c153fb79_wxs_gdc_realn.bam 45394535909 BAM harmonized CPTAC3 e3ad46da-7db1-40bd-b135-ceeeb270d8e5 b9e879d99cbedcefaf44f4e427113364 {"aliquot_tag": "ALQ_d8b809f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01631.MethArray.Green.T C3L-01631 UCEC Methylation_Array tumor CPT0091720009 202234380051_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 810c3000-3a91-4e59-ab17-2a5b3abedc4a 8a5111726a8af5afadf751e3832d9f73 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.MethArray.Red.T C3L-01631 UCEC Methylation_Array tumor CPT0091720009 202234380051_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 6c51a1b7-3ff1-4fcd-8d34-91bf052be2db 705481c9b73bfa4b1059ec4ab294b9bb {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.miRNA-Seq.S1_L006_R1.T C3L-01631 UCEC miRNA-Seq tumor CPT0091720006 180828_UNC32-K00270_0112_AHWTLNBBXX_GATCAG_S1_L006_R1_001.unaln.bam 199721113 BAM S1_L006_R1 submitted_unaligned CPTAC3 9f1e509d-1e57-413f-8f8c-5615d31b0486 44f8cfd37888a3b019cca8ac0b48499c {"aliquot_tag": "ALQ_2f5989bf", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.miRNA-Seq.T.hg38 C3L-01631 UCEC miRNA-Seq tumor CPT0091720006 be1ed6c4-0a9f-48bb-aec7-ec8f38f73059_mirnaseq_gdc_realn.bam 220292982 BAM harmonized CPTAC3 0f9d05aa-c597-4f2b-b2d7-7e0275cf54b3 a95e2f0aa75c98c64f63a7364384a054 {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.chimeric.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.chimeric.gdc_realn.bam 126789377 BAM chimeric harmonized CPTAC3 b3d5d80b-4fa5-4413-b41b-4a8347423de0 927c6a7b292c0e344a3323ec34f4756f {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.chimeric.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.chimeric.gdc_realn.bam 64940527 BAM chimeric harmonized CPTAC3 d1962bc8-672c-44c6-9b57-62898d8a58c1 49cab8f3d231ea1ecff925a7f2797c27 {"aliquot_tag": "ALQ_a870c60f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.genomic.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.genomic.gdc_realn.bam 9301532953 BAM genomic harmonized CPTAC3 e3664d14-0795-4f54-b9af-8767742dd695 4413be060442582fa6b510511c0e4f4e {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.genomic.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.genomic.gdc_realn.bam 5311578967 BAM genomic harmonized CPTAC3 7b72c326-1336-429a-a295-e14db153ff98 9616c6384bce12e27777da2f88544fd1 {"aliquot_tag": "ALQ_a870c60f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.S47_R1.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R1_001.fastq.gz 3289724055 FASTQ S47_R1 submitted_unaligned CPTAC3 64a800c9-ba0d-455c-8252-c3adcfe79c20 1b5dca46e578b487d1ca25fc9c0ffc08 {"aliquot_tag": "ALQ_a870c60f", "sample": "S47", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.S47_R2.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R2_001.fastq.gz 3447026446 FASTQ S47_R2 submitted_unaligned CPTAC3 d3b7677d-3ed1-48d8-b582-b4f091ed5138 909caaef578847b982c8a496f9c059aa {"aliquot_tag": "ALQ_a870c60f", "sample": "S47", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.S5_L008_R1.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 4370972526 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 0e012214-9883-4e4e-9d90-4ef8a046e5e8 a19bd3792ed583ebb024e21e47efefab {"aliquot_tag": "ALQ_2f5989bf", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.S5_L008_R2.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4766242841 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 9c8feb8a-c27d-4ffd-bb1c-352547902da7 426559d644521491bb2f5c34ae903852 {"aliquot_tag": "ALQ_2f5989bf", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.transcriptome.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.transcriptome.gdc_realn.bam 11548739091 BAM transcriptome harmonized CPTAC3 916abc25-9de5-49a3-8d2e-a459a8279b58 e1a706dba16b09636401023cf71bf6b8 {"aliquot_tag": "ALQ_2f5989bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.RNA-Seq.transcriptome.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.transcriptome.gdc_realn.bam 3203964968 BAM transcriptome harmonized CPTAC3 3c92465a-6cfd-484a-9b03-a2ee95de3f39 e52a1b2a2e65d0c38086802fab4aeaed {"aliquot_tag": "ALQ_a870c60f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.WGS.N C3L-01631 UCEC WGS blood_normal CPT0093650002 CPT0093650002.WholeGenome.RP-1303.bam 72888688170 BAM submitted_aligned CPTAC3 d461fece-090d-41ef-8a7b-06e67dca3b31 802d45a1b894df2b9652832ca69ea0b7 {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01631.WGS.N.hg38 C3L-01631 UCEC WGS blood_normal CPT0093650002 b79a44e8-8e7c-49bb-9f8e-b16971f96338_wgs_gdc_realn.bam 106827500798 BAM harmonized CPTAC3 1a1e12a8-8bc5-45f0-9367-8f7cc32e5d97 fc6e456451a4556483fe93c0adf79ae6 {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01631.WGS.T C3L-01631 UCEC WGS tumor CPT0091720009 CPT0091720009.WholeGenome.RP-1303.bam 65555996884 BAM submitted_aligned CPTAC3 0e4b564d-78c5-4765-9da3-97f050d4406d 8f83189be6a19baa42a1a48b88db9af0 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.WGS.T.hg38 C3L-01631 UCEC WGS tumor CPT0091720009 cfbdbdd3-6e47-49ae-93f0-da90cf5ceafb_wgs_gdc_realn.bam 94952692423 BAM harmonized CPTAC3 3eb9b2fc-035c-41e2-9dd3-3d443b073f1a 3ac7641754163e142fa58ba977d54cb0 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.WXS.N C3L-01631 UCEC WXS blood_normal CPT0093650002 CPT0093650002.WholeExome.RP-1303.bam 28878783826 BAM submitted_aligned CPTAC3 15788e85-ba65-49aa-9afa-b71f26d84e01 4c59e1611adddc4f09bcf4a68a0cedbd {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01631.WXS.N.hg38 C3L-01631 UCEC WXS blood_normal CPT0093650002 b79a44e8-8e7c-49bb-9f8e-b16971f96338_wxs_gdc_realn.bam 39922843919 BAM harmonized CPTAC3 fec156ec-e298-4158-9439-c2f5a3122b5b 502419525144e6aa81729a0f627ad702 {"aliquot_tag": "ALQ_c6d7533a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01631.WXS.T C3L-01631 UCEC WXS tumor CPT0091720009 CPT0091720009.WholeExome.RP-1303.bam 37506165067 BAM submitted_aligned CPTAC3 be363008-e86e-4886-98c3-ae739dc3d0ee 61831169089ac9446dd63c360f0482fe {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01631.WXS.T.hg38 C3L-01631 UCEC WXS tumor CPT0091720009 cfbdbdd3-6e47-49ae-93f0-da90cf5ceafb_wxs_gdc_realn.bam 52366911499 BAM harmonized CPTAC3 fbcbeae5-7f42-4190-86d5-f040f8542b4c 487e5a83e579125ab1b3afdd9704bff8 {"aliquot_tag": "ALQ_bfe6942e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01632.MethArray.Green.A C3L-01632 LUAD Methylation_Array tissue_normal CPT0086770009 203027390091_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 786fa7b1-fe4f-4d3d-aec5-92324237c4a9 b3bb7e04129cf0391462dd5c1fa9e4e2 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.MethArray.Green.T C3L-01632 LUAD Methylation_Array tumor CPT0086750009 202234380064_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 535b99b7-5727-40e6-8082-a076f3fffbf6 327f8525b23f454b4230df00f8d3236e {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.MethArray.Red.A C3L-01632 LUAD Methylation_Array tissue_normal CPT0086770009 203027390091_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 d20fe21d-3f46-47b9-8cb1-c0f844e2e64f 8985589153bc8d133bd369c5e799ad52 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.MethArray.Red.T C3L-01632 LUAD Methylation_Array tumor CPT0086750009 202234380064_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 83812f03-3bcc-4f2f-bc15-726c4a73df5d 4e35475be2d2a32813490fe9851d9a13 {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.miRNA-Seq.A.hg38 C3L-01632 LUAD miRNA-Seq tissue_normal CPT0086770006 fd1884ab-888d-4545-bc62-888642b4ad29_mirnaseq_gdc_realn.bam 202115569 BAM harmonized CPTAC3 eefa88bb-35b6-4e91-9a1e-1f6ff26d883b c34258d1337a379ccea2b26f12504f03 {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.miRNA-Seq.S36_L008_R1.T C3L-01632 LUAD miRNA-Seq tumor CPT0086750006 180724_UNC32-K00270_0106_BHWK3MBBXX_AGTTCC_S36_L008_R1_001.unaln.bam 292897415 BAM S36_L008_R1 submitted_unaligned CPTAC3 380b5d79-0add-4c56-afb4-4a9a320b8ce6 9e7ed6177a6c04f4b05e48d17d5f12ea {"aliquot_tag": "ALQ_94746bbf", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.miRNA-Seq.S41_L002_R1.A C3L-01632 LUAD miRNA-Seq tissue_normal CPT0086770006 181108_UNC31-K00269_0163_BH23TVBBXY_GACGAC_S41_L002_R1_001.unaln.bam 179745000 BAM S41_L002_R1 submitted_unaligned CPTAC3 43cc03d3-13e6-461e-9c58-4b86f4e18355 1e710075162d678ef72dfb548fdedca4 {"aliquot_tag": "ALQ_eeb438df", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.miRNA-Seq.T.hg38 C3L-01632 LUAD miRNA-Seq tumor CPT0086750006 8ade91d7-15cb-48ce-96dd-383a44f40dc2_mirnaseq_gdc_realn.bam 314633998 BAM harmonized CPTAC3 afdd682e-2f68-4781-ab72-1a164ac4d98d 90de9b1b57affa06f4d621c97c85f704 {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.RNA-Seq.chimeric.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.chimeric.gdc_realn.bam 41984843 BAM chimeric harmonized CPTAC3 f23935db-d7b7-4431-9d6b-e0a2ed7d8f0b c166d9cc89b91902bf1ca45b2e846bcc {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.RNA-Seq.chimeric.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.chimeric.gdc_realn.bam 33690784 BAM chimeric harmonized CPTAC3 ce1b8d6c-9df8-4b47-888f-502d4ab69baa 2a6eef6963d4f688ac86bb7672e639f8 {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.RNA-Seq.genomic.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.genomic.gdc_realn.bam 7978630316 BAM genomic harmonized CPTAC3 4b2cb14d-cdfc-46d2-a477-a6529f5bb874 cb65911a8260c37589b3945fbf0518f6 {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.RNA-Seq.genomic.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.genomic.gdc_realn.bam 9378195136 BAM genomic harmonized CPTAC3 b7f76a51-ce8e-4c04-94b8-16b4a9a04f9f 515cb4670b3cac64fcc3cb6ba330c28b {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.RNA-Seq.S16_L005_R1.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R1_001.fastq.gz 3797039600 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 239dc351-b231-4420-ad73-28f73918717c e4beff19033cea9201c3f1b354e7e641 {"aliquot_tag": "ALQ_eeb438df", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.RNA-Seq.S16_L005_R2.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R2_001.fastq.gz 4082882284 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 93f7e830-e290-4baa-8f75-e8d789413ca6 91c00a9e1ad893917a4a0fc4ccbfc872 {"aliquot_tag": "ALQ_eeb438df", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.RNA-Seq.S6_L002_R1.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4446087855 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 4597a475-1afc-401c-a790-e2e641db12e8 560c00e727976be0a5cff70f16a03bcc {"aliquot_tag": "ALQ_94746bbf", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.RNA-Seq.S6_L002_R2.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4965556419 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 7e688d8a-3506-4ff6-971c-3c1e5b717659 73a815bd039133773b8167edd9ac4a44 {"aliquot_tag": "ALQ_94746bbf", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.RNA-Seq.transcriptome.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.transcriptome.gdc_realn.bam 9358861161 BAM transcriptome harmonized CPTAC3 c561992d-d50a-4af5-a6ef-b0678f395063 b366c243e2abad0b7090d830d7a6081a {"aliquot_tag": "ALQ_eeb438df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.RNA-Seq.transcriptome.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.transcriptome.gdc_realn.bam 15665397640 BAM transcriptome harmonized CPTAC3 ba0e999f-b01d-4c83-a145-85c39f631385 ee36502fcd48e8234e61c48b4d350abf {"aliquot_tag": "ALQ_94746bbf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.WGS.A C3L-01632 LUAD WGS tissue_normal CPT0086770009 CPT0086770009.WholeGenome.RP-1303.bam 64368846526 BAM submitted_aligned CPTAC3 6c6c6bef-9dbe-4f6a-a6f7-b340915d3caa 86466e046f2b9f8a63fda06b5f5a9c46 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.WGS.A.hg38 C3L-01632 LUAD WGS tissue_normal CPT0086770009 2db62d68-1c8d-4571-9533-90d9fdb67f20_wgs_gdc_realn.bam 95101198958 BAM harmonized CPTAC3 1930902f-859c-4a48-932d-0cf76b2ff832 b70d6055024efc2ae5426c856c99c063 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.WGS.N C3L-01632 LUAD WGS blood_normal CPT0087410002 CPT0087410002.WholeGenome.RP-1303.bam 75839296153 BAM submitted_aligned CPTAC3 2ebced9f-e2f5-434b-8986-3913a77e3107 d18cee005234c1f82b7793e1a64edaba {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01632.WGS.N.hg38 C3L-01632 LUAD WGS blood_normal CPT0087410002 a1c9700f-78b5-49f7-bb98-15cfdb375f93_wgs_gdc_realn.bam 111279348247 BAM harmonized CPTAC3 f811062c-073b-4f15-8c0d-fc6b28a245dc 420e0c948bf4575ac214d70bc516978f {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01632.WGS.T C3L-01632 LUAD WGS tumor CPT0086750009 CPT0086750009.WholeGenome.RP-1303.bam 64284526074 BAM submitted_aligned CPTAC3 ef59b8ce-0e98-47d1-a9be-b88446b17fbb 11e0d0ca11493e99c0c3379087b965b7 {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.WGS.T.hg38 C3L-01632 LUAD WGS tumor CPT0086750009 e4173c2d-432b-4e6b-9681-448384e946e0_wgs_gdc_realn.bam 92966785855 BAM harmonized CPTAC3 32538bb6-26cc-4064-82c6-1d9540d515d7 20fd5251d8a78234060c6e19a957f1ba {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.WXS.A C3L-01632 LUAD WXS tissue_normal CPT0086770009 CPT0086770009.WholeExome.RP-1303.bam 32555380405 BAM submitted_aligned CPTAC3 6f367226-38c1-4ed0-aea6-60547ecb616c 866fb73191d42548e00628d00f0a2960 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.WXS.A.hg38 C3L-01632 LUAD WXS tissue_normal CPT0086770009 2db62d68-1c8d-4571-9533-90d9fdb67f20_wxs_gdc_realn.bam 44223152920 BAM harmonized CPTAC3 e700b7a2-85f4-498f-bcbe-a0f87fa1c97f c3a8be1cd37057bc3081572cec7a1a93 {"aliquot_tag": "ALQ_7e0b254e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01632.WXS.N C3L-01632 LUAD WXS blood_normal CPT0087410002 CPT0087410002.WholeExome.RP-1303.bam 43650327813 BAM submitted_aligned CPTAC3 29e6ed0b-12f1-44b4-8b11-de43855a313f 3d806ba8489130c45b6f7dc0d6b42916 {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01632.WXS.N.hg38 C3L-01632 LUAD WXS blood_normal CPT0087410002 a1c9700f-78b5-49f7-bb98-15cfdb375f93_wxs_gdc_realn.bam 59505667335 BAM harmonized CPTAC3 ac5e4172-54a7-4027-a859-dbf0b22c4976 bbc6daf6c8be538cf662f86eda014933 {"aliquot_tag": "ALQ_467a707c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01632.WXS.T C3L-01632 LUAD WXS tumor CPT0086750009 CPT0086750009.WholeExome.RP-1303.bam 28078104818 BAM submitted_aligned CPTAC3 a5ef49b1-e7b9-4837-a838-b828b76aa85c 37959ed1c2be2cf1f6a9979b0d14f2be {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01632.WXS.T.hg38 C3L-01632 LUAD WXS tumor CPT0086750009 e4173c2d-432b-4e6b-9681-448384e946e0_wxs_gdc_realn.bam 38147978709 BAM harmonized CPTAC3 f2ec66b0-d52f-42f1-ba7a-1084eac1e079 37055c087eaf119e2d403c7ca36f0eff {"aliquot_tag": "ALQ_4cb762e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01633.MethArray.Green.T C3L-01633 UCEC Methylation_Array tumor CPT0091910009 202234380062_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3cc557db-2d5e-4fe6-8c25-8fc346bffc78 3a27604b807bb62047a9acc4e600233c {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.MethArray.Red.T C3L-01633 UCEC Methylation_Array tumor CPT0091910009 202234380062_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 b40d3abd-0bd1-45a5-a6a9-292f5163df77 97fc9c06c17f4922e14af23d4ca14408 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.miRNA-Seq.S5_L006_R1.T C3L-01633 UCEC miRNA-Seq tumor CPT0091910006 180828_UNC32-K00270_0112_AHWTLNBBXX_AGTCAA_S5_L006_R1_001.unaln.bam 240468549 BAM S5_L006_R1 submitted_unaligned CPTAC3 374eb2c1-9edb-4afb-9c6f-78add2b0319e 449f507f10b8243d2f615493bb27d1ec {"aliquot_tag": "ALQ_52f3921f", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.miRNA-Seq.T.hg38 C3L-01633 UCEC miRNA-Seq tumor CPT0091910006 bb3b5934-335c-47e6-8c79-fba826085b93_mirnaseq_gdc_realn.bam 267277597 BAM harmonized CPTAC3 6bde9c8f-6e4d-4f03-9359-9b8876c52598 bef4633116c2e92c240bd78fd04ad6e0 {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.chimeric.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.chimeric.gdc_realn.bam 37655641 BAM chimeric harmonized CPTAC3 f7a18eec-8087-4d66-9340-f09b9723546e 78bd65e2534b2353543bbfe7a5cb5767 {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.chimeric.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.chimeric.gdc_realn.bam 181743091 BAM chimeric harmonized CPTAC3 ca395e24-91f5-45d7-bb5d-7ced649b0b71 b412ed9312b779de2788b9742cd85289 {"aliquot_tag": "ALQ_d2b0956f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.genomic.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.genomic.gdc_realn.bam 9504914517 BAM genomic harmonized CPTAC3 b5d8adf6-ef6a-40b1-a196-eaaa3c11d899 caf42b335f26ae526286b27833220f00 {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.genomic.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.genomic.gdc_realn.bam 9575192904 BAM genomic harmonized CPTAC3 5818adb7-1824-41eb-a95b-90e4415311c9 6e72ba76f17ac9d8bfc3be17b47587b1 {"aliquot_tag": "ALQ_d2b0956f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.S3_L007_R1.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 4452423395 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 ff305587-2591-40e3-83a9-fdd4cb6f7d0b c5ed0ba4d3e15378e2cb3a90ecc2dd83 {"aliquot_tag": "ALQ_52f3921f", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.S3_L007_R2.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 4766776796 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 9624b90f-a7c0-4a46-9317-a2a0cf016fe8 d00760341add419284aac35fe6bcd50b {"aliquot_tag": "ALQ_52f3921f", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.S94_R1.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R1_001.fastq.gz 6096845634 FASTQ S94_R1 submitted_unaligned CPTAC3 ffe93cac-8d42-4933-81ce-05d1f33a19e9 59afd75fb1ce83c4bb9c6fa2f46b6f0d {"aliquot_tag": "ALQ_d2b0956f", "sample": "S94", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.S94_R2.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R2_001.fastq.gz 6348850234 FASTQ S94_R2 submitted_unaligned CPTAC3 8458ced5-99a4-4695-b82f-ab063ba599c8 2f4090fa76a735a89c3dc33cae5fe0da {"aliquot_tag": "ALQ_d2b0956f", "sample": "S94", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.transcriptome.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.transcriptome.gdc_realn.bam 10465743240 BAM transcriptome harmonized CPTAC3 b26cb27a-e494-408e-a726-2886dc721618 1dbb3ce3a66a05a3ffdca5c857d7e61e {"aliquot_tag": "ALQ_52f3921f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.RNA-Seq.transcriptome.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.transcriptome.gdc_realn.bam 5011680619 BAM transcriptome harmonized CPTAC3 fe485078-a264-4a53-b094-cdd94fc404e0 9aa908f0fc6a7ebb5adf85aacbef3629 {"aliquot_tag": "ALQ_d2b0956f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.WGS.N C3L-01633 UCEC WGS blood_normal CPT0093690002 CPT0093690002.WholeGenome.RP-1303.bam 61130833842 BAM submitted_aligned CPTAC3 6c7812b2-1bb0-41c1-ae41-0668dc5cb7d7 ae89f70d4c240fdd0f80324e8bc44024 {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01633.WGS.N.hg38 C3L-01633 UCEC WGS blood_normal CPT0093690002 642bdd21-0fca-4840-bc9d-17e7c8d1ae6c_wgs_gdc_realn.bam 88990464652 BAM harmonized CPTAC3 259d2e1b-0e58-4d98-b661-fb82f53fc01c 9ad70a37bbab501cb63eca9364f1dadd {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01633.WGS.T C3L-01633 UCEC WGS tumor CPT0091910009 CPT0091910009.WholeGenome.RP-1303.bam 67725350566 BAM submitted_aligned CPTAC3 51b220e1-97ee-44e8-bac9-7de00d0bdb8c 55b9e37bb61272b7f2da669e443dc515 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.WGS.T.hg38 C3L-01633 UCEC WGS tumor CPT0091910009 df0ba400-4c87-462a-857f-72314f913d7d_wgs_gdc_realn.bam 98622471129 BAM harmonized CPTAC3 6403e3c2-f49b-4e8d-a9f6-ae1f61138987 ef74f4fe3580e7c3cee495932ca6492a {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.WXS.N C3L-01633 UCEC WXS blood_normal CPT0093690002 CPT0093690002.WholeExome.RP-1303.bam 40921988553 BAM submitted_aligned CPTAC3 d605d750-36e1-483b-84ac-560465cf27b0 e10bd399667b9e958ec9526944d876a7 {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01633.WXS.N.hg38 C3L-01633 UCEC WXS blood_normal CPT0093690002 642bdd21-0fca-4840-bc9d-17e7c8d1ae6c_wxs_gdc_realn.bam 56410933444 BAM harmonized CPTAC3 f4086270-5508-420c-8f10-9a358b012151 cecd9b7a8d8cdc53e306338bbbbbe1da {"aliquot_tag": "ALQ_327be3b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01633.WXS.T C3L-01633 UCEC WXS tumor CPT0091910009 CPT0091910009.WholeExome.RP-1303.bam 32380677009 BAM submitted_aligned CPTAC3 df3b907c-8c19-43f3-b7b3-fccd15951299 82f47df717a0a12b6c12c756eb267082 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01633.WXS.T.hg38 C3L-01633 UCEC WXS tumor CPT0091910009 df0ba400-4c87-462a-857f-72314f913d7d_wxs_gdc_realn.bam 44945424256 BAM harmonized CPTAC3 02568b9d-c100-4e27-8e6d-4a1d4094ed20 45e3747ba1a793c74dc5aaad33c30189 {"aliquot_tag": "ALQ_c24c8f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01637.ADD_77a5f1d7.MethArray.Green.T C3L-01637 PDA Methylation_Array tumor CPT0086190010 202234380094_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8ff5e44b-839b-46d9-b452-5282ac24a21b 376ef9fe429e0e667d1303f94c651409 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.ADD_77a5f1d7.MethArray.Red.T C3L-01637 PDA Methylation_Array tumor CPT0086190010 202234380094_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 b04a5c58-6604-403c-b348-54885c8afa45 4af78a3c5d01e5680f2f84a1f7e1e847 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.ADD_77a5f1d7.WGS.T C3L-01637 PDA WGS tumor CPT0086190010 CPT0086190010.WholeGenome.RP-1303.bam 54986970867 BAM submitted_aligned CPTAC3 0d348c17-aa25-43f4-a56d-0847fb8d32b1 2040a34493dd0020ba16a4b59adcaf60 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.ADD_77a5f1d7.WGS.T.hg38 C3L-01637 PDA WGS tumor CPT0086190010 5715552c-426e-4d4d-a0bf-9bcbe73be6bc_wgs_gdc_realn.bam 81281606863 BAM harmonized CPTAC3 dff13367-5082-43de-a47b-b507d7245a80 a5d54b559d6a8696bfc4edbcf2443ebb {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.ADD_77a5f1d7.WXS.T C3L-01637 PDA WXS tumor CPT0086190010 CPT0086190010.WholeExome.RP-1303.bam 40757632012 BAM submitted_aligned CPTAC3 da92ef37-50af-4c1d-9734-a3fe9f73b4e0 d522b9400cbfb7a5887846f378b6d739 {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.ADD_77a5f1d7.WXS.T.hg38 C3L-01637 PDA WXS tumor CPT0086190010 5715552c-426e-4d4d-a0bf-9bcbe73be6bc_wxs_gdc_realn.bam 56222723082 BAM harmonized CPTAC3 cd9336c1-3b80-4550-b90c-3f74778c936a 197111a62281522de45829fcfdd4483a {"aliquot_tag": "ADD_77a5f1d7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.MethArray.Green.A C3L-01637 PDA Methylation_Array tissue_normal CPT0086210006 203561620072_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cf076a2e-4db8-43ac-b0c1-ce742395b8f7 bbf7684c2352c14d54c0b44163a06946 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.MethArray.Red.A C3L-01637 PDA Methylation_Array tissue_normal CPT0086210006 203561620072_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b000d67f-53eb-4fcc-82c5-0c4f4686ebed 75efadc06cbeace0b0a8a99fd04cc33a {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.miRNA-Seq.A.hg38 C3L-01637 PDA miRNA-Seq tissue_normal CPT0086210009 783bd6ee-102c-4778-bb1e-b2af80b71dc5_mirnaseq_gdc_realn.bam 239574490 BAM harmonized CPTAC3 027f406d-df5b-4241-9b5f-daf329925572 46be579c36a9de2d12062a4e3e7a0915 {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.miRNA-Seq.S14_L001_R1.A C3L-01637 PDA miRNA-Seq tissue_normal CPT0086210009 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 217868198 BAM S14_L001_R1 submitted_unaligned CPTAC3 47daf1ae-4c2a-41af-b8a9-daf307b08a3c 7c8e3a671578d91bf4fbac3b673bd942 {"aliquot_tag": "ALQ_a186415d", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.miRNA-Seq.S34_L008_R1.T C3L-01637 PDA miRNA-Seq tumor CPT0086190007 180724_UNC32-K00270_0106_BHWK3MBBXX_GGCTAC_S34_L008_R1_001.unaln.bam 297668846 BAM S34_L008_R1 submitted_unaligned CPTAC3 5dde1548-8e04-4445-ad93-f60ef3bb2fbb 6f3d667b071d5f7e17a3f26e0213fa56 {"aliquot_tag": "ALQ_f0da5535", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.miRNA-Seq.T.hg38 C3L-01637 PDA miRNA-Seq tumor CPT0086190007 c3e06381-19cc-40d8-9d04-09863dd38aac_mirnaseq_gdc_realn.bam 316856389 BAM harmonized CPTAC3 f51c8113-8dc0-4b9e-983d-094063c6faaa ca57da6e487d3b739d3669d52040204f {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.RNA-Seq.chimeric.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.chimeric.gdc_realn.bam 128121013 BAM chimeric harmonized CPTAC3 55b6428e-de9b-4db3-8df5-6d85171abf71 8f47594d8e55902e554db4e04ae3e9ba {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.RNA-Seq.chimeric.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.chimeric.gdc_realn.bam 31099964 BAM chimeric harmonized CPTAC3 c2044790-867b-4f46-bbf0-2f7a19238ddb 1dcb34920b7be27e04ac81a6fdb86e3c {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.RNA-Seq.genomic.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.genomic.gdc_realn.bam 9875410016 BAM genomic harmonized CPTAC3 8db0a3bd-7aa8-4aea-9fb8-eece18479eae cefbdbde5e9002a57005d2c7ddc69be2 {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.RNA-Seq.genomic.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.genomic.gdc_realn.bam 8927040724 BAM genomic harmonized CPTAC3 2cc7fd2c-3a8e-4167-a5df-773a7d386f16 6d0a8ada6ac1acb0a81309b9a460c6bd {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.RNA-Seq.S10_L003_R1.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R1_001.fastq.gz 4127858067 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 e29fc9d5-e08c-44d7-9612-a6309a767e50 130f6f8abf5e4adac98b0f8539ff56e4 {"aliquot_tag": "ALQ_f0da5535", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.RNA-Seq.S10_L003_R2.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R2_001.fastq.gz 4754292520 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 84cb105d-3e3d-42e5-a250-bb4aa20ce824 6412966593342f89fa54dc6c84ad04e2 {"aliquot_tag": "ALQ_f0da5535", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.RNA-Seq.S19_L005_R1.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 4055868945 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 e6168402-60ed-4ae8-8b31-78c510877930 ac0eb072deaadaf2370aad9e6e460696 {"aliquot_tag": "ALQ_a186415d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.RNA-Seq.S19_L005_R2.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 4460444987 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 8047c467-d41a-4ecb-9698-1dd8007aa4a8 096e52b84b8e1dcb0470365352ed6854 {"aliquot_tag": "ALQ_a186415d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.RNA-Seq.transcriptome.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.transcriptome.gdc_realn.bam 10231142589 BAM transcriptome harmonized CPTAC3 636177a1-8569-4086-b582-4facf6af065e be4871b9f577e35dc71ba18ffa173885 {"aliquot_tag": "ALQ_a186415d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.RNA-Seq.transcriptome.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.transcriptome.gdc_realn.bam 13741567201 BAM transcriptome harmonized CPTAC3 85797a6c-9d70-4d55-8e57-0be3b2ad8d78 e8840be71eb72fdfb1908d9d0f188bfd {"aliquot_tag": "ALQ_f0da5535", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.Targeted.T C3L-01637 PDA Targeted_Sequencing tumor CPT0086190010_1 CPT0086190010_1.CustomSelection.RP-1303.PDO-18786.bam 6846991472 BAM submitted_aligned CPTAC3 c0dff626-aa16-4e58-b243-52617cedb920 5634e7ca7f4427e543b897dd0e89326a {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.Targeted.T.hg38 C3L-01637 PDA Targeted_Sequencing tumor CPT0086190010_1 43df9f52-8514-4599-8ee0-ddf44db2324c_targetedsequencing_gdc_realn.bam 9536392146 BAM harmonized CPTAC3 5f5b4b2c-d536-4a0d-b307-600b8aaf1e58 1b2270153271417841dec14a3d299b61 {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.WGS.A C3L-01637 PDA WGS tissue_normal CPT0086210006 CPT0086210006.WholeGenome.RP-1303.bam 61965696683 BAM submitted_aligned CPTAC3 5fbce78f-98e6-42fb-8ba7-67a262fa65fd 9d46359a8b65387694e1fba888a625d1 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.WGS.A.hg38 C3L-01637 PDA WGS tissue_normal CPT0086210006 c053a6a4-f6f4-4654-8983-0ce308df090c_wgs_gdc_realn.bam 90956173717 BAM harmonized CPTAC3 23feb2c6-7d75-4509-aabb-d2bc99004ba7 92515c125606958499be534884d98d38 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.WGS.N C3L-01637 PDA WGS blood_normal CPT0087390002 CPT0087390002.WholeGenome.RP-1303.bam 62112483282 BAM submitted_aligned CPTAC3 09b55453-c647-4e15-90f4-bbb59cb97296 d9b914dcd85176f500e009542e1cef65 {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01637.WGS.N.hg38 C3L-01637 PDA WGS blood_normal CPT0087390002 c502c419-51a2-4235-a80b-213211cb1285_wgs_gdc_realn.bam 91268074583 BAM harmonized CPTAC3 b0958b14-258a-42c8-9208-a0d1224b16b4 44ef7c1bf4c00830c996229b6f3d6b29 {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01637.WXS.A C3L-01637 PDA WXS tissue_normal CPT0086210006 CPT0086210006.WholeExome.RP-1303.bam 24285591771 BAM submitted_aligned CPTAC3 2fc93a01-1f6c-454e-a665-251af39833a9 9b07a2e624d43b31515c5fb6de0a1684 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.WXS.A.hg38 C3L-01637 PDA WXS tissue_normal CPT0086210006 c053a6a4-f6f4-4654-8983-0ce308df090c_wxs_gdc_realn.bam 33108672711 BAM harmonized CPTAC3 5d2c4008-b76c-41a9-870d-172ef5194bff 5cef185b99e3dec5cad02409f9faa7f9 {"aliquot_tag": "ALQ_31395ccc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01637.WXS.N C3L-01637 PDA WXS blood_normal CPT0087390002 CPT0087390002.WholeExome.RP-1303.bam 35419211739 BAM submitted_aligned CPTAC3 a681fc62-53f4-4496-bb8a-7846e1a35f20 4c11b8634e2cc9902b0dafc26df58de8 {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01637.WXS.N.hg38 C3L-01637 PDA WXS blood_normal CPT0087390002 c502c419-51a2-4235-a80b-213211cb1285_wxs_gdc_realn.bam 48148385522 BAM harmonized CPTAC3 0b5b49f8-940f-4f67-bcdb-8f16a38ada10 92d0f4100ae7f7ce87a47286ccc2bd6d {"aliquot_tag": "ALQ_6b0f0b05", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01637.WXS.T C3L-01637 PDA WXS tumor CPT0086190010_1 CPT0086190010_1.WholeExome.RP-1303.bam 69015497243 BAM submitted_aligned CPTAC3 b80b63f6-7a70-4c26-935d-88f1f17964fc 077adafee790a66e0081593cbffa0ed3 {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01637.WXS.T.hg38 C3L-01637 PDA WXS tumor CPT0086190010_1 43df9f52-8514-4599-8ee0-ddf44db2324c_wxs_gdc_realn.bam 94491110315 BAM harmonized CPTAC3 14900b7d-0fc5-4480-a94d-a42ed86e0a01 0ac1a0fb40349aff836726630129939e {"aliquot_tag": "ALQ_29e7b5a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01639.MethArray.Green.T C3L-01639 UCEC Methylation_Array tumor CPT0091780009 202234380054_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 80a05653-270a-4d9b-b0a7-4c4f2580fd71 db780019b29481c995c48e62755f51b4 {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.MethArray.Red.T C3L-01639 UCEC Methylation_Array tumor CPT0091780009 202234380054_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 538fbf9d-3d45-4297-b2b1-91cdbb47d7a0 76d16b24aabbfcce605b72a9b54ed778 {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.miRNA-Seq.A.hg38 C3L-01639 UCEC miRNA-Seq tissue_normal CPT0091790009 d1969a4c-7011-49d4-9d90-33986d5f5934_mirnaseq_gdc_realn.bam 301663258 BAM harmonized CPTAC3 5b7b6e7c-3e0c-4157-a152-a6b31f71d107 d24da330e53e0089783f95ef505f9119 {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.miRNA-Seq.S22_L005_R1.A C3L-01639 UCEC miRNA-Seq tissue_normal CPT0091790009 181113_UNC31-K00269_0164_AH23NNBBXY_TCCCGA_S22_L005_R1_001.unaln.bam 265418180 BAM S22_L005_R1 submitted_unaligned CPTAC3 368d2166-92bc-48be-860d-f935236a4ccb 3ab7ede3b7a3ac8a46e303bc5985a654 {"aliquot_tag": "ALQ_c836a53f", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.miRNA-Seq.S2_L006_R1.T C3L-01639 UCEC miRNA-Seq tumor CPT0091780006 180828_UNC32-K00270_0112_AHWTLNBBXX_TAGCTT_S2_L006_R1_001.unaln.bam 256432667 BAM S2_L006_R1 submitted_unaligned CPTAC3 b28c5abf-4076-4071-b444-e3771b21ed2a 52b7c625b1d96788eda84ca5a90a71ba {"aliquot_tag": "ALQ_65e9911e", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.miRNA-Seq.T.hg38 C3L-01639 UCEC miRNA-Seq tumor CPT0091780006 8564e10c-07b6-4a18-ba76-91445ed9d078_mirnaseq_gdc_realn.bam 282493696 BAM harmonized CPTAC3 5ce5a181-8386-4268-99af-b6f7af82999b cd38cf7bd1da4ef9fe6dde187090b93e {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.chimeric.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.chimeric.gdc_realn.bam 37892782 BAM chimeric harmonized CPTAC3 3942208c-033f-430a-a291-655bb6ce9977 f8f4e06caf18d414a6fd069def59337e {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.RNA-Seq.chimeric.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.chimeric.gdc_realn.bam 41166393 BAM chimeric harmonized CPTAC3 1b0601ea-3e49-48da-bf76-8c267388d21a 7122ff4ec669892393e03381510d1ce6 {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.chimeric.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.chimeric.gdc_realn.bam 265210569 BAM chimeric harmonized CPTAC3 1a345f59-45c0-4ae7-a61c-b75ab7cab282 4fdcb8749b802da64679cec20fdc7c92 {"aliquot_tag": "ALQ_6d802b0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.genomic.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.genomic.gdc_realn.bam 9804456650 BAM genomic harmonized CPTAC3 e856f494-c144-4016-b657-2a9dba02fd01 e3823455665556dd532e02da6c9ec8ba {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.RNA-Seq.genomic.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.genomic.gdc_realn.bam 10609031851 BAM genomic harmonized CPTAC3 db3fc1d7-6286-4cf3-9f3f-982cc185efe4 0d23f97acb6fdc575fe4bd58276e9f19 {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.genomic.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.genomic.gdc_realn.bam 11216178044 BAM genomic harmonized CPTAC3 cc771ecb-f4d3-4a70-ab3d-c91976ee4967 b2d3a3ded0781de29da28eb7c78fa36f {"aliquot_tag": "ALQ_6d802b0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.S13_L004_R1.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 4219194039 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 464f159b-5e28-455d-ad4c-e804d7891f38 915b5894e76d198e87707aeef5891151 {"aliquot_tag": "ALQ_c836a53f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.RNA-Seq.S13_L004_R2.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4617092075 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 beb2f356-caaf-41d2-8bdb-3b7a63094247 39aeef49003dfde9dff244d6ae5de009 {"aliquot_tag": "ALQ_c836a53f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.RNA-Seq.S6_L008_R1.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4893948768 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 816781bb-3b5f-46a9-9f46-c39afa6ff2e5 5e230b1960121e7212685d6177ecc616 {"aliquot_tag": "ALQ_65e9911e", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.S6_L008_R2.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 5349775554 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 8d511897-c67c-4325-b924-c90d6d6b38d3 f30bfad0b41a56e4caa776685ecf0d1f {"aliquot_tag": "ALQ_65e9911e", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.S85_R1.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R1_001.fastq.gz 6969742686 FASTQ S85_R1 submitted_unaligned CPTAC3 ae0bf109-1bd2-49b1-a4e0-190613a29dbb bd4fe80a32bb3df130f203d395756149 {"aliquot_tag": "ALQ_6d802b0e", "sample": "S85", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.S85_R2.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R2_001.fastq.gz 7296880555 FASTQ S85_R2 submitted_unaligned CPTAC3 8b6b17e4-cffd-48ed-9db2-751bfdb8b22a af7be891a534056c0ca21f1bf5ab77a8 {"aliquot_tag": "ALQ_6d802b0e", "sample": "S85", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.transcriptome.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.transcriptome.gdc_realn.bam 11821399776 BAM transcriptome harmonized CPTAC3 22cde8be-57d4-4594-8434-db26bc40d5ff 02e457540023be95195459d93bd62b7d {"aliquot_tag": "ALQ_c836a53f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.RNA-Seq.transcriptome.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.transcriptome.gdc_realn.bam 13379930032 BAM transcriptome harmonized CPTAC3 b82bb41a-6d7b-4d00-8ab2-f11c0a1e5f47 d0cf1488ae5a38ed155d87b9934ef3e5 {"aliquot_tag": "ALQ_65e9911e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.RNA-Seq.transcriptome.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.transcriptome.gdc_realn.bam 6269449426 BAM transcriptome harmonized CPTAC3 04570948-2386-408d-86b3-66d9be1da42f 1add702d844d4c12038ac83f1e467328 {"aliquot_tag": "ALQ_6d802b0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.WGS.A C3L-01639 UCEC WGS tissue_normal CPT0091790006 CPT0091790006.WholeGenome.RP-1303.bam 52934139541 BAM submitted_aligned CPTAC3 25e53d0a-437c-4c0c-9a8a-576453423932 401d8309cce17e665f0bbcb9e235b94f {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.WGS.A.hg38 C3L-01639 UCEC WGS tissue_normal CPT0091790006 1ab11a59-3815-4127-9b4c-4dc9f026aec9_wgs_gdc_realn.bam 78213779820 BAM harmonized CPTAC3 0a22bbdd-efb0-4918-84c3-ec98a5bafa9b 6c2b0928d6936072eb960ad8f15ed28b {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.WGS.N C3L-01639 UCEC WGS blood_normal CPT0093660002 CPT0093660002.WholeGenome.RP-1303.bam 67527712837 BAM submitted_aligned CPTAC3 7eaa3e77-d329-4721-842c-1c18597e24f5 615e92a02df31231eccd2d57f38bde11 {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01639.WGS.N.hg38 C3L-01639 UCEC WGS blood_normal CPT0093660002 82fa485a-068e-486a-aa8c-878ed3a81d8a_wgs_gdc_realn.bam 99800594570 BAM harmonized CPTAC3 36ca42be-b102-4493-a3f3-6300f4de1ace 22c8d26cfdd5ad9ff5df3ce43c9aa54d {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01639.WGS.T C3L-01639 UCEC WGS tumor CPT0091780009 CPT0091780009.WholeGenome.RP-1303.bam 57840401909 BAM submitted_aligned CPTAC3 61448e2b-e8f6-48f0-9799-91d664eee44a ba7f1722873dbfb08b713b655813eecb {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.WGS.T.hg38 C3L-01639 UCEC WGS tumor CPT0091780009 80dbf861-e83b-4e9a-be3a-05613a4e9b17_wgs_gdc_realn.bam 84438577936 BAM harmonized CPTAC3 d3866b3d-f2ae-441d-9ac4-1df2f6c6cb87 8e63d1272811da3a4266b44a2394eb8b {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.WXS.A C3L-01639 UCEC WXS tissue_normal CPT0091790006 CPT0091790006.WholeExome.RP-1303.bam 21128498239 BAM submitted_aligned CPTAC3 7ebac9cd-cf60-412e-ad31-6aa53a12c8e1 8b86ef21a0d7709df1ed70955a9bb77a {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.WXS.A.hg38 C3L-01639 UCEC WXS tissue_normal CPT0091790006 1ab11a59-3815-4127-9b4c-4dc9f026aec9_wxs_gdc_realn.bam 28967625898 BAM harmonized CPTAC3 368351e0-8755-47e0-8397-59ae0db162d1 24e915cac716ee2045ec583972d3d269 {"aliquot_tag": "ALQ_5889b8ae", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01639.WXS.N C3L-01639 UCEC WXS blood_normal CPT0093660002 CPT0093660002.WholeExome.RP-1303.bam 29730589996 BAM submitted_aligned CPTAC3 04bef61d-bc46-48e0-ae71-be0047c813da 9933a67892ff986d3fa3ad609a02d9fc {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01639.WXS.N.hg38 C3L-01639 UCEC WXS blood_normal CPT0093660002 82fa485a-068e-486a-aa8c-878ed3a81d8a_wxs_gdc_realn.bam 40768753602 BAM harmonized CPTAC3 d29e9681-fd30-4c8f-85b9-401a73fdb4d1 3544e7ddefe7aaae811c35d1bddf197f {"aliquot_tag": "ALQ_817729ea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01639.WXS.T C3L-01639 UCEC WXS tumor CPT0091780009 CPT0091780009.WholeExome.RP-1303.bam 34381824182 BAM submitted_aligned CPTAC3 c6b36fc6-ef8b-459c-a012-a150a8c5755e 4f83d9c67a05a02e4184ed7c2cdc2c6a {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01639.WXS.T.hg38 C3L-01639 UCEC WXS tumor CPT0091780009 80dbf861-e83b-4e9a-be3a-05613a4e9b17_wxs_gdc_realn.bam 48328828649 BAM harmonized CPTAC3 8b72f9d2-2e8e-4d11-b59d-c82e17c0f788 287829e1f0053f6f5bc6f20792a1b227 {"aliquot_tag": "ALQ_f5568c8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01662.MethArray.Green.T C3L-01662 PDA Methylation_Array tumor CPT0092630009 202234380099_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 585e9252-150c-4c04-8cce-a42245938452 02bdc017649cadbad35bd0a93adc39eb {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.MethArray.Red.T C3L-01662 PDA Methylation_Array tumor CPT0092630009 202234380099_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 5f4946e1-9fc2-4fc0-8fb6-97f13358cd07 dad40a3bd091bd2a40b2f967976e305d {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.miRNA-Seq.S13_L007_R1.T C3L-01662 PDA miRNA-Seq tumor CPT0092630006 180724_UNC32-K00270_0106_BHWK3MBBXX_CGGAAT_S13_L007_R1_001.unaln.bam 296493159 BAM S13_L007_R1 submitted_unaligned CPTAC3 065c8287-8f6b-4f41-be00-a8adc12ef45a 02eed21b541f4be0d62418d8e212eb69 {"aliquot_tag": "ALQ_e88d6937", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.miRNA-Seq.T.hg38 C3L-01662 PDA miRNA-Seq tumor CPT0092630006 e7b35aee-bee6-4beb-98ff-70f9b107c7dd_mirnaseq_gdc_realn.bam 320023181 BAM harmonized CPTAC3 4b5f4348-a236-40b0-896e-46d76c9f3364 04e8d3543d60ebdb127c48e3d82b820d {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.RNA-Seq.chimeric.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.chimeric.gdc_realn.bam 37008871 BAM chimeric harmonized CPTAC3 419f757d-c444-4c25-a2f1-b31cfb3f7a31 4f5f89f57ed35fc0b0173d78829e87f5 {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.RNA-Seq.genomic.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.genomic.gdc_realn.bam 9832151069 BAM genomic harmonized CPTAC3 249e02ac-fd25-4f8c-a81a-66b738a5b9c3 9a584ea77456c86918637ca74bb0fea2 {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.RNA-Seq.S15_L004_R1.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 4293253378 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 b8342ecf-6779-436c-bcfa-55abd631e62e 124f285e0a9ee351c55c8f54beff952e {"aliquot_tag": "ALQ_e88d6937", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.RNA-Seq.S15_L004_R2.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4707365099 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 a55017a7-697e-4dba-b4db-e3e7c6399e88 2ee26c40454fed188c98d6269884249a {"aliquot_tag": "ALQ_e88d6937", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.RNA-Seq.transcriptome.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.transcriptome.gdc_realn.bam 12256923833 BAM transcriptome harmonized CPTAC3 00763025-7410-4dd4-b50b-6e3d8cbecb42 d65f35a4b4a0e90ec3fe996a69119e84 {"aliquot_tag": "ALQ_e88d6937", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.Targeted.T C3L-01662 PDA Targeted_Sequencing tumor CPT0092630009_1 CPT0092630009_1.CustomSelection.RP-1303.PDO-18786.bam 3495479155 BAM submitted_aligned CPTAC3 514194dd-d0d5-45fa-920d-ba2e810c9035 a2fceb03d18f47f46ebc23b08151398d {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.Targeted.T.hg38 C3L-01662 PDA Targeted_Sequencing tumor CPT0092630009_1 2a4a409b-1e69-4ada-82ca-aa5fb68d80e2_targetedsequencing_gdc_realn.bam 4803356895 BAM harmonized CPTAC3 2cadca36-b201-438a-9ddf-742404cb856f fcdb91749718d0c145e81d3b99bbe331 {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.WGS.N C3L-01662 PDA WGS blood_normal CPT0093720002 CPT0093720002.WholeGenome.RP-1303.bam 58777685282 BAM submitted_aligned CPTAC3 0788de23-154b-4c6e-ba64-1e34d4f37a5b 615767e3030a747b71167435f270a714 {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01662.WGS.N.hg38 C3L-01662 PDA WGS blood_normal CPT0093720002 2f5a49e9-c6f0-445e-80b9-b66e560c5255_wgs_gdc_realn.bam 85057139736 BAM harmonized CPTAC3 b7414b32-3c62-4400-9382-f438829f3c30 c7d8a93371bddc0e373eec37d56b40b9 {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01662.WGS.T C3L-01662 PDA WGS tumor CPT0092630009 CPT0092630009.WholeGenome.RP-1303.bam 66777477206 BAM submitted_aligned CPTAC3 d29f671f-4c7b-46ff-ac2f-d5192404cc76 8d567f99ea1d72c297b378ca76208d47 {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.WGS.T.hg38 C3L-01662 PDA WGS tumor CPT0092630009 d4ac8568-7108-410e-ae03-a8596a8482b8_wgs_gdc_realn.bam 99047758223 BAM harmonized CPTAC3 9de1387c-9399-40e4-8c83-9f4e6dcde134 939522d26a8b849f4b38ae07077659e2 {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.WXS.N C3L-01662 PDA WXS blood_normal CPT0093720002 CPT0093720002.WholeExome.RP-1303.bam 33637402878 BAM submitted_aligned CPTAC3 3bb889aa-f7b8-4d4a-a29b-d0c523965f30 4c184d3a9787e115ece9a86eb6819328 {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01662.WXS.N.hg38 C3L-01662 PDA WXS blood_normal CPT0093720002 2f5a49e9-c6f0-445e-80b9-b66e560c5255_wxs_gdc_realn.bam 46191000322 BAM harmonized CPTAC3 79fd961c-df7e-4735-bf0b-a4bf65c7b2d2 224109e97ca1c88eae36f05954ff2bab {"aliquot_tag": "ALQ_bfab5c8f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01662.WXS.T C3L-01662 PDA WXS tumor CPT0092630009_1 CPT0092630009_1.WholeExome.RP-1303.bam 69841485124 BAM submitted_aligned CPTAC3 376fdfac-0fb2-49fc-b668-cba1db9819b6 6626e2f5d62a7b4eed8f943fcf8e2a21 {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.WXS.T C3L-01662 PDA WXS tumor CPT0092630009 CPT0092630009.WholeExome.RP-1303.bam 46214200542 BAM submitted_aligned CPTAC3 c043fb0c-d2f2-4974-bbd5-f2b0aad49eff ecc881fe79171a529da2c99c4068fb5b {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.WXS.T.hg38 C3L-01662 PDA WXS tumor CPT0092630009_1 2a4a409b-1e69-4ada-82ca-aa5fb68d80e2_wxs_gdc_realn.bam 97320065371 BAM harmonized CPTAC3 7e9f0e06-ebe2-430c-9c76-af6cfd10c833 feeb0dec12275750982a9836af7c6e1a {"aliquot_tag": "ALQ_82118526", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01662.WXS.T.hg38 C3L-01662 PDA WXS tumor CPT0092630009 d4ac8568-7108-410e-ae03-a8596a8482b8_wxs_gdc_realn.bam 64928295924 BAM harmonized CPTAC3 0b47149d-59b4-4b38-a4da-09b45b194dc7 dd94f82e05ced20765e8dd48e223eaf8 {"aliquot_tag": "ALQ_783274a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.MethArray.Green.A C3L-01663 LSCC Methylation_Array tissue_normal CPT0091620006 203219670117_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 43779177-009b-4b30-bc32-d708f0e8e81b c56388df98c0ef1fb6e76b8d644b499a {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.MethArray.Green.T C3L-01663 LSCC Methylation_Array tumor CPT0091610009 202234370095_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8b0ec21a-0810-46b3-874b-c2d2639661b3 d6e69f5ec327a78cdb9df936681615bf {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.MethArray.Red.A C3L-01663 LSCC Methylation_Array tissue_normal CPT0091620006 203219670117_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 0bd65a19-f8cf-4d41-abad-a95c7c0ee18a 33f5df1c831d3d190fdbbe9f881dcabd {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.MethArray.Red.T C3L-01663 LSCC Methylation_Array tumor CPT0091610009 202234370095_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 9a6ed0f4-f442-4e2c-9926-fb9faf0d2c46 8b1ef7c9d2f0e415244328e036477b1e {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.miRNA-Seq.A.hg38 C3L-01663 LSCC miRNA-Seq tissue_normal CPT0091620009 110cb655-fe8b-4831-8419-895782fa8c1f_mirnaseq_gdc_realn.bam 241753043 BAM harmonized CPTAC3 c6970efc-61ee-485c-8d5f-2b89c2661fcd 426cb64eef9dde97e2a67dfead61374e {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.miRNA-Seq.S17_L006_R1.T C3L-01663 LSCC miRNA-Seq tumor CPT0091610006 180828_UNC32-K00270_0112_AHWTLNBBXX_CAGATC_S17_L006_R1_001.unaln.bam 248078949 BAM S17_L006_R1 submitted_unaligned CPTAC3 94024610-80a1-4c51-bf4f-4770302fa6aa d00c3580ae5f324cef6c76a01040f944 {"aliquot_tag": "ALQ_a3a520ca", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.miRNA-Seq.S42_L006_R1.A C3L-01663 LSCC miRNA-Seq tissue_normal CPT0091620009 181113_UNC31-K00269_0164_AH23NNBBXY_GTCCGC_S42_L006_R1_001.unaln.bam 216683449 BAM S42_L006_R1 submitted_unaligned CPTAC3 8573ec1a-2dbd-4e32-8d74-49af6a8ecfc6 f62e5254caf5fff1a75ebd77f1c3c51c {"aliquot_tag": "ALQ_74ba478b", "sample": "S42", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.miRNA-Seq.T.hg38 C3L-01663 LSCC miRNA-Seq tumor CPT0091610006 1edce407-e371-4a95-9f8b-7d3a95969381_mirnaseq_gdc_realn.bam 273527978 BAM harmonized CPTAC3 6ca2320b-c0dc-4a07-8179-0cfdae5a4f7a 5e33aef34ce4e8bdb3743f418baee079 {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.RNA-Seq.chimeric.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.chimeric.gdc_realn.bam 26527097 BAM chimeric harmonized CPTAC3 de2e4ee5-e3d2-4631-bc2a-34dde385d02e c0b95b99e9640a7de1d54fff8cd566f8 {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.RNA-Seq.chimeric.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.chimeric.gdc_realn.bam 34595374 BAM chimeric harmonized CPTAC3 ab709015-f458-454b-b089-64fe11f59ecd 2e1ffe422cbac7839318723526d4d60a {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.RNA-Seq.genomic.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.genomic.gdc_realn.bam 6839774564 BAM genomic harmonized CPTAC3 2776a5f6-132b-49a1-840b-88d6fa627183 311205b535d9acf66d7c8b6e8d32ba4b {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.RNA-Seq.genomic.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.genomic.gdc_realn.bam 9887406355 BAM genomic harmonized CPTAC3 ce880781-f3ec-4b45-b9f8-d4e41f1ae4f5 ca16b6f5cdf1632e5ad72aeb87cd0c4b {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.RNA-Seq.S11_L003_R1.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3096565657 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 0c2f8c50-d1f7-452f-b323-5ec3d9e85455 374d200c8f44ec2f621c394c37a34f4b {"aliquot_tag": "ALQ_74ba478b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.RNA-Seq.S11_L003_R2.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3155433011 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 1f657838-9efc-4444-b1b3-8f0addcb0122 dd6b6af503eb40465a99ff67ffda7248 {"aliquot_tag": "ALQ_74ba478b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.RNA-Seq.S1_L001_R1.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4137297556 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 73ef597b-8bcb-4b29-8e1a-be4927a883ea 863344a5ae77fc7495f7ee9a21c590aa {"aliquot_tag": "ALQ_a3a520ca", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.RNA-Seq.S1_L001_R2.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4728508029 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 9592a8a9-47d8-4648-a59a-dcf9b503f518 a5c2cce86e9489c28887beb28e16190d {"aliquot_tag": "ALQ_a3a520ca", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.RNA-Seq.transcriptome.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.transcriptome.gdc_realn.bam 8512764587 BAM transcriptome harmonized CPTAC3 e5c738bc-a26c-4544-bc92-09a8f280f535 7b5c0ec073aab38c02527175cf2c8dee {"aliquot_tag": "ALQ_74ba478b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.RNA-Seq.transcriptome.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.transcriptome.gdc_realn.bam 10320070617 BAM transcriptome harmonized CPTAC3 240558c1-105c-4422-9517-473e9e3ec797 08a9e7b653c5e944f92aec745feeac40 {"aliquot_tag": "ALQ_a3a520ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.WGS.A C3L-01663 LSCC WGS tissue_normal CPT0091620006 CPT0091620006.WholeGenome.RP-1303.bam 57205192238 BAM submitted_aligned CPTAC3 65b1cd43-76b8-4d0d-b2e1-3a3fb5d9e236 33008d233ac97006bcf72457a6bf2fbb {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.WGS.A.hg38 C3L-01663 LSCC WGS tissue_normal CPT0091620006 d0ea30eb-f465-4c37-86f7-c259ea148c28_wgs_gdc_realn.bam 82854517176 BAM harmonized CPTAC3 d7dfe8b2-35b7-4f03-9cf7-406dee195ed6 ede187914fe0f6bf9add5211bdba055f {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.WGS.N C3L-01663 LSCC WGS blood_normal CPT0093630002 CPT0093630002.WholeGenome.RP-1303.bam 65339829388 BAM submitted_aligned CPTAC3 ba4c7980-a360-4c39-b785-891f741e83b3 d7f28f820b3ccdbfc4608afc8e02c880 {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01663.WGS.N.hg38 C3L-01663 LSCC WGS blood_normal CPT0093630002 c0be2772-0404-43bf-87d1-057321de4a1c_wgs_gdc_realn.bam 96362297417 BAM harmonized CPTAC3 2ef0c346-cfe6-4acb-9e4f-8eafe124472b 1ed7a1673c4ad054155377f8ae324eb9 {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01663.WGS.T C3L-01663 LSCC WGS tumor CPT0091610009 CPT0091610009.WholeGenome.RP-1303.bam 68729293186 BAM submitted_aligned CPTAC3 2cbe5098-db19-40f0-a8ed-4ee54c608538 40b828a445696232a8937b77045484b3 {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.WGS.T.hg38 C3L-01663 LSCC WGS tumor CPT0091610009 e712b7fc-5d1d-49f9-b0c7-ec951cf20427_wgs_gdc_realn.bam 97768099192 BAM harmonized CPTAC3 fc1694b8-a22e-4f70-89c7-1fe64d2195b0 dc4b529ec4d6d3c6f72a7bd1f9282a3d {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.WXS.A C3L-01663 LSCC WXS tissue_normal CPT0091620006 CPT0091620006.WholeExome.RP-1303.bam 36154949954 BAM submitted_aligned CPTAC3 72ce16a8-06ed-4ede-b8b6-47765f61d8ab 4646c51a6cdcbeb89acf44d5eb2dda29 {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.WXS.A.hg38 C3L-01663 LSCC WXS tissue_normal CPT0091620006 d0ea30eb-f465-4c37-86f7-c259ea148c28_wxs_gdc_realn.bam 48410809586 BAM harmonized CPTAC3 7aa6f8a1-aee9-445d-94b1-e2ae8b5150b9 ee599c93f8678ede2dc1a70acdb3db59 {"aliquot_tag": "ALQ_e4055a1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01663.WXS.N C3L-01663 LSCC WXS blood_normal CPT0093630002 CPT0093630002.WholeExome.RP-1303.bam 34448333125 BAM submitted_aligned CPTAC3 ddd41190-142d-4aa9-be15-2267f38000f7 f61904f655e8ada9e74edeee7c3ec10a {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01663.WXS.N.hg38 C3L-01663 LSCC WXS blood_normal CPT0093630002 c0be2772-0404-43bf-87d1-057321de4a1c_wxs_gdc_realn.bam 46637050281 BAM harmonized CPTAC3 d739bead-c5df-4370-a6c2-028cd01cca60 b267de4b231630314b18f86cde855195 {"aliquot_tag": "ALQ_4997a69a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01663.WXS.T C3L-01663 LSCC WXS tumor CPT0091610009 CPT0091610009.WholeExome.RP-1303.bam 31745699084 BAM submitted_aligned CPTAC3 b8f04fb5-6980-49c2-9c12-d99122b3672f 7f6b789c9588bce3ee5a86abfe2ab6c0 {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01663.WXS.T.hg38 C3L-01663 LSCC WXS tumor CPT0091610009 e712b7fc-5d1d-49f9-b0c7-ec951cf20427_wxs_gdc_realn.bam 44357975751 BAM harmonized CPTAC3 2fea0ef4-a5dc-4fae-b932-caac7d74dd9b 3fc8399b64309443e044256ea38c0a73 {"aliquot_tag": "ALQ_331a3d5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01664.MethArray.Green.T C3L-01664 UCEC Methylation_Array tumor CPT0086490009 202178770111_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f7241a29-1c3c-4896-8480-945ad0721ffc a4c7c09af91ad6d2194fd433686c6c2e {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.MethArray.Red.T C3L-01664 UCEC Methylation_Array tumor CPT0086490009 202178770111_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 12606df3-3146-4fee-a50f-b24422b40f49 745b948e4dad3098915016d233823795 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.miRNA-Seq.S21_L006_R1.T C3L-01664 UCEC miRNA-Seq tumor CPT0086490006 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L006_R1_001.unaln.bam 197020247 BAM S21_L006_R1 submitted_unaligned CPTAC3 2c7a4e07-ee3e-4fce-bece-9559c232930e 9d1d0e93ca8d25ba3f4573291708c747 {"aliquot_tag": "ALQ_d710f410", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.miRNA-Seq.T.hg38 C3L-01664 UCEC miRNA-Seq tumor CPT0086490006 8b056760-06af-4dcd-8113-fc5b634f877e_mirnaseq_gdc_realn.bam 222222001 BAM harmonized CPTAC3 53b40765-b907-4fa3-8127-b36b13955efa 6d54ec84ace5accfe3426e13218063a7 {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.chimeric.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.chimeric.gdc_realn.bam 42293514 BAM chimeric harmonized CPTAC3 8904a35e-e49c-4162-a2ef-c24b4b745cd7 04207dab627dbc27a74dce0e26ce4184 {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.chimeric.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.chimeric.gdc_realn.bam 208877927 BAM chimeric harmonized CPTAC3 8ca4effc-5c3d-43b9-b5e1-6611949220a1 2f51305cafea66187c329f82509f58ba {"aliquot_tag": "ALQ_1ead5dfa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.genomic.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.genomic.gdc_realn.bam 9451445756 BAM genomic harmonized CPTAC3 e056ea08-71ff-4135-b77b-df5dfa1c132a 34089186b168de167e5631f89d5dad64 {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.genomic.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.genomic.gdc_realn.bam 10170037976 BAM genomic harmonized CPTAC3 78c08458-d1f7-48a8-bae4-482f7d518195 435e93a568b00d8ec4255e4ada812612 {"aliquot_tag": "ALQ_1ead5dfa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.S11_L003_R1.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R1_001.fastq.gz 4664158765 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 55a1e215-8b97-4a2b-bda6-cf10ad5dd700 afb829fcf49f763429d92d75c2ff1f0e {"aliquot_tag": "ALQ_d710f410", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.S11_L003_R2.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R2_001.fastq.gz 5016265899 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 a76c2357-4795-47e4-846d-432085fadd08 47c43542e1359583c1f4a55bed10cabb {"aliquot_tag": "ALQ_d710f410", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.S35_R1.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R1_001.fastq.gz 6081444164 FASTQ S35_R1 submitted_unaligned CPTAC3 e01e49a0-7a2d-4860-a623-34ff543494a7 6cab759ffa1b0aef16314d8aa3ef6ea3 {"aliquot_tag": "ALQ_1ead5dfa", "sample": "S35", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.S35_R2.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R2_001.fastq.gz 6328288764 FASTQ S35_R2 submitted_unaligned CPTAC3 5323af2a-134a-455d-ac16-929b33788c9a b45a888a6aa123979a7e1274658ed60d {"aliquot_tag": "ALQ_1ead5dfa", "sample": "S35", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.transcriptome.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.transcriptome.gdc_realn.bam 12441898934 BAM transcriptome harmonized CPTAC3 ad555ea6-6f1e-42bb-96f0-29796d23ae23 5d27ea279167b74c408021972090756c {"aliquot_tag": "ALQ_d710f410", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.RNA-Seq.transcriptome.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.transcriptome.gdc_realn.bam 5000160717 BAM transcriptome harmonized CPTAC3 43346e71-c94e-4dad-a8ac-50ead9592ab1 9669f1e854b025fa68974b2457473f1f {"aliquot_tag": "ALQ_1ead5dfa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.WGS.N C3L-01664 UCEC WGS blood_normal CPT0087420002 CPT0087420002.WholeGenome.RP-1303.bam 66771549643 BAM submitted_aligned CPTAC3 8750d8e9-0f1e-4a8c-9d94-fce59c248e33 ed973243b791b60a5476b02a6bee761c {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01664.WGS.N.hg38 C3L-01664 UCEC WGS blood_normal CPT0087420002 d500ddc5-7e3c-4e3b-89a1-ac32ae7d24a5_gdc_realn.bam 100355349082 BAM harmonized CPTAC3 a1dcd820-778b-4d02-92ef-68dd5ba837b5 084a2679ad734620db58eb2b2f761d2e {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01664.WGS.T C3L-01664 UCEC WGS tumor CPT0086490009 CPT0086490009.WholeGenome.RP-1303.bam 74574387437 BAM submitted_aligned CPTAC3 3cde246e-6bfc-4997-be3e-f9631fe34483 0f99618f38fb4284e3b30b8a0f2deb65 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.WGS.T.hg38 C3L-01664 UCEC WGS tumor CPT0086490009 4cf4fb4b-35b7-4431-a8e3-dce12eddc6a3_gdc_realn.bam 113222203524 BAM harmonized CPTAC3 2576642e-2fbe-4c9f-a0b3-57dd90a3219f ac0309239dc451e04b930c02046989e5 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.WXS.N C3L-01664 UCEC WXS blood_normal CPT0087420002 CPT0087420002.WholeExome.RP-1303.bam 31939741209 BAM submitted_aligned CPTAC3 405a059a-1189-4e25-ad7e-8d59cc9c773c c66c96fd263762eaf4c43b123eddc0c0 {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01664.WXS.N.hg38 C3L-01664 UCEC WXS blood_normal CPT0087420002 d500ddc5-7e3c-4e3b-89a1-ac32ae7d24a5_gdc_realn.bam 43771169053 BAM harmonized CPTAC3 9edec9b2-58d2-4207-bc2f-ab81a82195e9 976459e1598cf6c618d340a81e2d5fdf {"aliquot_tag": "ALQ_1da0aac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01664.WXS.T C3L-01664 UCEC WXS tumor CPT0086490009 CPT0086490009.WholeExome.RP-1303.bam 29048575031 BAM submitted_aligned CPTAC3 ce2ad533-6347-4a2b-a86f-f7b518ce6e4b 1b36ecbfe3facdaff6bdc6ab2bba3766 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01664.WXS.T.hg38 C3L-01664 UCEC WXS tumor CPT0086490009 4cf4fb4b-35b7-4431-a8e3-dce12eddc6a3_gdc_realn.bam 40141706420 BAM harmonized CPTAC3 01eb5b56-cd11-4123-b34d-3b18fe9d16ad 32674cb35dc6f480cddddd8e69089962 {"aliquot_tag": "ALQ_47afe981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01665.MethArray.Green.A C3L-01665 CCRCC Methylation_Array tissue_normal CPT0104510006 204930640024_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e0ce84ce-0181-43dd-9852-3b900e18255b 1364a23e2cc359651ed85e275d74d960 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.MethArray.Green.T C3L-01665 CCRCC Methylation_Array tumor CPT0104500009 202234380054_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 91ea2a78-29c9-410a-9d6e-1fdc75e1e541 92a3ca1bfff926a2c2a5a4b51a577d5d {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.MethArray.Red.A C3L-01665 CCRCC Methylation_Array tissue_normal CPT0104510006 204930640024_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 24a47833-f921-42e2-bded-681e1ff94eef ddfc0b57345597f4538bafed02ff8d64 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.MethArray.Red.T C3L-01665 CCRCC Methylation_Array tumor CPT0104500009 202234380054_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 7ec5c187-240e-44b3-a9cb-c57487ccc6b9 e03320341e7826cdfaf7878ec8bde34e {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.miRNA-Seq.A.hg38 C3L-01665 CCRCC miRNA-Seq tissue_normal CPT0104510009 25037772-4350-4114-a3f0-6c2f7d201ed9_mirnaseq_gdc_realn.bam 251945683 BAM harmonized CPTAC3 410d2c5c-9c1a-40d7-b5d2-f7109eb80655 39e568b8f7e2ad24e2a75fded0404779 {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.miRNA-Seq.S37_L007_R1.T C3L-01665 CCRCC miRNA-Seq tumor CPT0104500006 181108_UNC31-K00269_0163_BH23TVBBXY_CGGAAT_S37_L007_R1_001.unaln.bam 239318696 BAM S37_L007_R1 submitted_unaligned CPTAC3 5b1d5c50-312a-465e-a5d0-4a0951f0515d b55d5cefed67db3c25bcff9a0a8630f6 {"aliquot_tag": "ALQ_425d5b1b", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.miRNA-Seq.S39_L002_R1.A C3L-01665 CCRCC miRNA-Seq tissue_normal CPT0104510009 181119_UNC31-K00269_0165_AH27WCBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 226595441 BAM S39_L002_R1 submitted_unaligned CPTAC3 aaaf640f-8356-4aad-b31a-53c443627289 a2291d18e0cc0d5b00a83eadba08ec59 {"aliquot_tag": "ALQ_ef826f3a", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.miRNA-Seq.T.hg38 C3L-01665 CCRCC miRNA-Seq tumor CPT0104500006 eee234ed-d72e-4b0e-bfce-5e6b0e45443f_mirnaseq_gdc_realn.bam 268004909 BAM harmonized CPTAC3 27fc5186-7de1-4475-906e-031f1f0e406b 3929894cd1b6c8c35594483a831a5d51 {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.RNA-Seq.chimeric.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.chimeric.gdc_realn.bam 33623886 BAM chimeric harmonized CPTAC3 5d095f41-f963-4a99-a095-cd0225165b5b 5b5c8006074d75e47f22a71da957a9d4 {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.RNA-Seq.chimeric.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.chimeric.gdc_realn.bam 33973531 BAM chimeric harmonized CPTAC3 715a8b31-2ab4-4cec-b05c-d63d7fe6eceb 701c8e8777bf763b908db8e0fb58729b {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.RNA-Seq.genomic.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.genomic.gdc_realn.bam 9974667232 BAM genomic harmonized CPTAC3 01c21cba-a9af-46d1-a80f-0795be983fb1 ba2ac44736e5b8e29d1c913f5378ca47 {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.RNA-Seq.genomic.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.genomic.gdc_realn.bam 7860687362 BAM genomic harmonized CPTAC3 53a53704-7666-4a21-a7a2-b403ed4024b5 2be2bdd2a2eee3b685800ce72405d41c {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.RNA-Seq.S1_L007_R1.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3552229163 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 979f0067-3aaa-4ce5-82be-18c59b92d745 20fef6485dfa03166c23467d8681f872 {"aliquot_tag": "ALQ_425d5b1b", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.RNA-Seq.S1_L007_R2.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3910020008 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 59769f43-2edb-4653-a37e-326fb6ebf5f4 017b62b2c5ea53ccc6801385a8fd8194 {"aliquot_tag": "ALQ_425d5b1b", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.RNA-Seq.S8_L008_R1.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 4406130660 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 d2e0e613-b766-4a33-afd9-9b711e97ba5e 87e27cb24c698f77ec3621d1da97537f {"aliquot_tag": "ALQ_ef826f3a", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.RNA-Seq.S8_L008_R2.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4842367319 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 0f866237-d0e1-4239-b0af-ffe14fa9c06c e004cabccf30ee1e6982966870d89fb8 {"aliquot_tag": "ALQ_ef826f3a", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.RNA-Seq.transcriptome.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.transcriptome.gdc_realn.bam 10824252346 BAM transcriptome harmonized CPTAC3 6cf98e30-a8da-4c7e-8ef1-74b52fc231f7 0834a7acd5a32add2688a6ed80bbb0bc {"aliquot_tag": "ALQ_ef826f3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.RNA-Seq.transcriptome.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.transcriptome.gdc_realn.bam 10135166468 BAM transcriptome harmonized CPTAC3 124be1dc-170b-43fd-929b-e7e40dc23282 28dcb680371d04d92cb8371ed192fa65 {"aliquot_tag": "ALQ_425d5b1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.WGS.A C3L-01665 CCRCC WGS tissue_normal CPT0104510006 CPT0104510006.WholeGenome.RP-1303.bam 59047137473 BAM submitted_aligned CPTAC3 ffd1877a-9571-41bd-b749-a8205538bc67 b1447e24274e097a134773c5240dd2d7 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.WGS.A.hg38 C3L-01665 CCRCC WGS tissue_normal CPT0104510006 c192eb5a-01f5-4795-a4dc-57cb22564607_wgs_gdc_realn.bam 86257749071 BAM harmonized CPTAC3 36f7e42f-807d-4005-afee-172278bb5369 57e63b2ffe896e43ef53bed95ba1844f {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.WGS.N C3L-01665 CCRCC WGS blood_normal CPT0105140002 CPT0105140002.WholeGenome.RP-1303.bam 69057605719 BAM submitted_aligned CPTAC3 def0a483-8bd3-4ef2-a744-bf79aebdc898 055024d716e5a5ca5787723a7f71635c {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01665.WGS.N.hg38 C3L-01665 CCRCC WGS blood_normal CPT0105140002 f33295b5-1e46-4afb-b768-3c61712548e0_wgs_gdc_realn.bam 100834153895 BAM harmonized CPTAC3 3a5bf9ec-f875-40ae-b887-d5449db41a21 7d26b99f87a7dbd34b142fd535290aac {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01665.WGS.T C3L-01665 CCRCC WGS tumor CPT0104500009 CPT0104500009.WholeGenome.RP-1303.bam 60568149548 BAM submitted_aligned CPTAC3 85a360d3-a835-435b-ad64-2370e07603c6 e583f929adbabf6b8c95a8a6bc749dd1 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.WGS.T.hg38 C3L-01665 CCRCC WGS tumor CPT0104500009 7c1b396d-0542-4277-b15d-852e7886f4f3_wgs_gdc_realn.bam 90587408380 BAM harmonized CPTAC3 5d037ebb-0e4c-4354-a6b1-91f55663dd3d 597a6e5df30e5e1780536277815e4866 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.WXS.A C3L-01665 CCRCC WXS tissue_normal CPT0104510006 CPT0104510006.WholeExome.RP-1303.bam 21291307658 BAM submitted_aligned CPTAC3 96d587b6-b209-441f-b786-89346419036c d697d84e018dde39f578b313a2ce1e96 {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.WXS.A.hg38 C3L-01665 CCRCC WXS tissue_normal CPT0104510006 c192eb5a-01f5-4795-a4dc-57cb22564607_wxs_gdc_realn.bam 28571748041 BAM harmonized CPTAC3 acfcd1f7-fb4d-4ce0-a12e-2d73ac5b33a9 6e3693723228437d4584e7b49515d57c {"aliquot_tag": "ALQ_7f3d72ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01665.WXS.N C3L-01665 CCRCC WXS blood_normal CPT0105140002 CPT0105140002.WholeExome.RP-1303.bam 31012727015 BAM submitted_aligned CPTAC3 bc7f9a9b-4e74-4c23-a635-20f744e86463 1b494929dd386f761a836fa902ed8e17 {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01665.WXS.N.hg38 C3L-01665 CCRCC WXS blood_normal CPT0105140002 f33295b5-1e46-4afb-b768-3c61712548e0_wxs_gdc_realn.bam 42166935318 BAM harmonized CPTAC3 3a2d1689-a42e-478c-b5e7-f282dfa2f372 1c347ab73b5dfa9a20c31095583f58e5 {"aliquot_tag": "ALQ_8d567060", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01665.WXS.T C3L-01665 CCRCC WXS tumor CPT0104500009 CPT0104500009.WholeExome.RP-1303.bam 40408339915 BAM submitted_aligned CPTAC3 61902771-e805-41d4-bf8d-cb9f18d7d177 07b3319adaea533cd32efb8692c03293 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01665.WXS.T.hg38 C3L-01665 CCRCC WXS tumor CPT0104500009 7c1b396d-0542-4277-b15d-852e7886f4f3_wxs_gdc_realn.bam 54750168929 BAM harmonized CPTAC3 374d2a79-d433-48f5-9a5c-312e0619f875 afc26a3f2ff58c4ce8b44aa5fcd1d2c0 {"aliquot_tag": "ALQ_d2e2468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01668.MethArray.Green.T C3L-01668 UCEC Methylation_Array tumor CPT0186560011 203561450025_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 047926fe-5b32-42f0-90c0-ea6fa3386665 1a212332e18251146ab60a276938a275 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.MethArray.Red.T C3L-01668 UCEC Methylation_Array tumor CPT0186560011 203561450025_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 6ed44b55-cf51-4653-a85e-89f797f8c78e 285531f7cd5ec3985886aec25e230437 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.miRNA-Seq.S2_L001_R1.T C3L-01668 UCEC miRNA-Seq tumor CPT0186560014 190508_UNC31-K00269_0215_BH7FYKBBXY_CGATGT_S2_L001_R1_001.unaln.bam 250990473 BAM S2_L001_R1 submitted_unaligned CPTAC3 e6381bfe-9317-445f-befb-7e2e5ec57e38 08e0142a2cacf92fd2c887f53cfaa917 {"aliquot_tag": "ALQ_7e72f44a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.miRNA-Seq.T.hg38 C3L-01668 UCEC miRNA-Seq tumor CPT0186560014 0b06ee24-8939-49a3-bbc2-cb464fe9bd96_mirnaseq_gdc_realn.bam 277832460 BAM harmonized CPTAC3 2b4af245-9385-4ae8-ae41-7f4cb28ed119 983e5c23457aba0e8e8d2800b6f563fb {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.RNA-Seq.chimeric.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.chimeric.gdc_realn.bam 36969658 BAM chimeric harmonized CPTAC3 1f87d162-cffc-4d4a-bd6f-83a9e8fd8002 9204f075f4cbf3740c67b5e6611d7fca {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.RNA-Seq.genomic.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.genomic.gdc_realn.bam 9138462326 BAM genomic harmonized CPTAC3 ce1f34cf-fa01-403b-afad-7049a089ed6d 47637f278261c69b709005be1589d211 {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.RNA-Seq.S12_L004_R1.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R1_001.fastq.gz 4529984647 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 625ba623-69d4-478f-b201-9c67d3b25697 9c188eaed1b09d15824a51330af22db7 {"aliquot_tag": "ALQ_7e72f44a", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.RNA-Seq.S12_L004_R2.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R2_001.fastq.gz 4574905222 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 1a33f8a2-429e-4d65-b7a5-b02cff29c0c3 4d30b7df5f062cdc692ad321b137f69f {"aliquot_tag": "ALQ_7e72f44a", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.RNA-Seq.transcriptome.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.transcriptome.gdc_realn.bam 9695303637 BAM transcriptome harmonized CPTAC3 b1bf11f6-4546-4609-a651-9d9fcd2ce3ef a4a3adf8bb6825ab2c2ddf4af588d4e3 {"aliquot_tag": "ALQ_7e72f44a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.WGS.N C3L-01668 UCEC WGS blood_normal CPT0186620002 CPT0186620002.WholeGenome.RP-1303.bam 67417683678 BAM submitted_aligned CPTAC3 62958839-ad4e-44c4-a193-a8cb95a12a69 d729e1031afa672dab79bb47c031236d {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01668.WGS.N.hg38 C3L-01668 UCEC WGS blood_normal CPT0186620002 d15a2060-bdd7-4fab-84f1-fb50911e1a3c_wgs_gdc_realn.bam 99214437041 BAM harmonized CPTAC3 76afbc49-f923-4965-b75d-e9b490e41ad8 83eab647ccb2fa560acbfe2f818e7dc0 {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01668.WGS.T C3L-01668 UCEC WGS tumor CPT0186560011 CPT0186560011.WholeGenome.RP-1303.bam 72799004197 BAM submitted_aligned CPTAC3 8adee160-175a-44ec-9e2b-604920cefc4e f3942d20dce9200b63e6c359e101bc8a {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.WGS.T.hg38 C3L-01668 UCEC WGS tumor CPT0186560011 d3fde119-0b54-4bc9-b3f4-77e6b213f325_wgs_gdc_realn.bam 105216593317 BAM harmonized CPTAC3 d7f180a3-c67a-46da-8a7f-8a9028048c24 16bc2b1a5aacb7160d29b6e67a8f4c55 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.WXS.N C3L-01668 UCEC WXS blood_normal CPT0186620002 CPT0186620002.WholeExome.RP-1303.bam 20513283858 BAM submitted_aligned CPTAC3 acce20ef-33a9-49c8-9d3a-08f363a67d7e 54cda6128c25195ff651e30f016e5194 {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01668.WXS.N.hg38 C3L-01668 UCEC WXS blood_normal CPT0186620002 d15a2060-bdd7-4fab-84f1-fb50911e1a3c_wxs_gdc_realn.bam 27974290875 BAM harmonized CPTAC3 4c645c19-7e12-4aed-bf4c-840dc1068395 6dd7a08e9653235baecc1655be0f907d {"aliquot_tag": "ALQ_fd1eb450", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01668.WXS.T C3L-01668 UCEC WXS tumor CPT0186560011 CPT0186560011.WholeExome.RP-1303.bam 19009740486 BAM submitted_aligned CPTAC3 1873cb5f-8fad-475d-b18f-ec3d5632c304 d278f90df418ff505dd45c926423a52d {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01668.WXS.T.hg38 C3L-01668 UCEC WXS tumor CPT0186560011 d3fde119-0b54-4bc9-b3f4-77e6b213f325_wxs_gdc_realn.bam 27331543974 BAM harmonized CPTAC3 b9c1dff2-b3f3-448f-9985-0616ba2075cc 0476e948909867a0697fbb4213ce26f3 {"aliquot_tag": "ALQ_e1800c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.MethArray.Green.T C3L-01672 UCEC Methylation_Array tumor CPT0172460011 203561620016_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 acd61c9e-fbbc-42d9-a088-e4f28a52f9ef c9a4998d8f6898496bfe4ba3f7d2955f {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.MethArray.Red.T C3L-01672 UCEC Methylation_Array tumor CPT0172460011 203561620016_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9ec1aa0a-29da-4f92-8ba6-27cf54c584e8 bcaa1cbbdf20eb092af92713352425fb {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.miRNA-Seq.S42_L004_R1.T C3L-01672 UCEC miRNA-Seq tumor CPT0172460018 190508_UNC31-K00269_0215_BH7FYKBBXY_TAATCG_S42_L004_R1_001.unaln.bam 165180931 BAM S42_L004_R1 submitted_unaligned CPTAC3 bed92036-e146-4596-b122-0c2e725aac10 3a677e52539630c8bc070b267a7b2005 {"aliquot_tag": "ALQ_91f75d7b", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.miRNA-Seq.T.hg38 C3L-01672 UCEC miRNA-Seq tumor CPT0172460018 2ee1eb34-2ef8-4278-88b0-bf4e04c1513d_mirnaseq_gdc_realn.bam 184568905 BAM harmonized CPTAC3 bb426802-86d8-408e-b8da-9d11f7bca3d8 fa2fcfa28e2009d739e2681e921daefd {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.chimeric.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.chimeric.gdc_realn.bam 41765908 BAM chimeric harmonized CPTAC3 9e7cda70-b121-439e-abbb-8154d3103ab8 6a672623897c5d667c992c70b35ec3e0 {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.chimeric.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.chimeric.gdc_realn.bam 441475212 BAM chimeric harmonized CPTAC3 c008fee3-eb7e-41e9-aba7-1f8a07406eb6 a8af066521e780e01be02115fcdb827b {"aliquot_tag": "ALQ_cc50fd2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.genomic.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.genomic.gdc_realn.bam 9862605327 BAM genomic harmonized CPTAC3 b43262d9-ed69-49dc-ac16-3c9791f58c5c 9207e294a6920174e078ed95358feca3 {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.genomic.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.genomic.gdc_realn.bam 18179364563 BAM genomic harmonized CPTAC3 462604c2-2ff0-4f23-ac85-dae0197a0a42 1998f149a0549b2abb85cf14bde8e369 {"aliquot_tag": "ALQ_cc50fd2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.S11_L003_R1.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R1_001.fastq.gz 4779290704 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 91c8e4fd-03c5-467b-84b9-adb60fa651ac 3998b157177ea6ca48a73aa53c227b55 {"aliquot_tag": "ALQ_91f75d7b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.S11_L003_R2.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R2_001.fastq.gz 5485309573 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 12e50250-2bdb-4be7-a42d-ae3973e5629c 8cc3d2c6045aba21aa82b70a29ac4d99 {"aliquot_tag": "ALQ_91f75d7b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.S26_R1.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R1_001.fastq.gz 12293193288 FASTQ S26_R1 submitted_unaligned CPTAC3 4546350d-fe05-418e-888d-aff3b8305d7d 7e33734613eab2f9163783430c47f80b {"aliquot_tag": "ALQ_cc50fd2e", "sample": "S26", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.S26_R2.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R2_001.fastq.gz 12669018946 FASTQ S26_R2 submitted_unaligned CPTAC3 ca0fa8b1-fbe0-467b-a655-de2b70930144 41f28187ab0e1cefc74756ac5719a971 {"aliquot_tag": "ALQ_cc50fd2e", "sample": "S26", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.transcriptome.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.transcriptome.gdc_realn.bam 10661343612 BAM transcriptome harmonized CPTAC3 5a3abcc3-b1ff-4d7f-8ab2-34fcd005404d e458f864bf48154d1e473a6dd08795dd {"aliquot_tag": "ALQ_91f75d7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.RNA-Seq.transcriptome.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.transcriptome.gdc_realn.bam 11615774782 BAM transcriptome harmonized CPTAC3 7a6afaf6-da92-411c-8cd1-14efbbc34e38 35a60b92778d0fd614378a70c8104862 {"aliquot_tag": "ALQ_cc50fd2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.WGS.N C3L-01672 UCEC WGS blood_normal CPT0172490002 CPT0172490002.WholeGenome.RP-1303.bam 57878542213 BAM submitted_aligned CPTAC3 e76157ff-6a65-4ce6-8840-a110d5e4df0b 876b509b7e0f62f3810d546eadde7bd3 {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01672.WGS.N.hg38 C3L-01672 UCEC WGS blood_normal CPT0172490002 e9e086cf-40bd-436f-8233-c40dbcfe1fd2_wgs_gdc_realn.bam 86518489674 BAM harmonized CPTAC3 3b4d126d-5e06-4439-96d0-2c5deeef44b0 959ac4b4ec06336ba1f0052b06a0b3d4 {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01672.WGS.T C3L-01672 UCEC WGS tumor CPT0172460011 CPT0172460011.WholeGenome.RP-1303.bam 83051373450 BAM submitted_aligned CPTAC3 e9f81954-c511-4028-8603-704c8afcbee8 da634277ee702b15e61b5646655557fa {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.WGS.T.hg38 C3L-01672 UCEC WGS tumor CPT0172460011 7b548498-e34a-4e42-9213-f4b61db549a5_wgs_gdc_realn.bam 123141626976 BAM harmonized CPTAC3 dce38f35-63ef-446a-8a20-c2cd1257433b 5d0806c287a24ded5b587454160bd4c9 {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.WXS.N C3L-01672 UCEC WXS blood_normal CPT0172490002 CPT0172490002.WholeExome.RP-1303.bam 22665652407 BAM submitted_aligned CPTAC3 e0983366-a4fd-4d79-95cd-e2e5bb6cdbb6 326951655b6f0a9ad83e18166d7074a9 {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01672.WXS.N.hg38 C3L-01672 UCEC WXS blood_normal CPT0172490002 e9e086cf-40bd-436f-8233-c40dbcfe1fd2_wxs_gdc_realn.bam 30998837574 BAM harmonized CPTAC3 e3a987c7-7077-45c4-9623-8c56f9041710 8b0d597056cd37c8109341e82e1c802b {"aliquot_tag": "ALQ_ea6912f5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01672.WXS.T C3L-01672 UCEC WXS tumor CPT0172460011 CPT0172460011.WholeExome.RP-1303.bam 28681981291 BAM submitted_aligned CPTAC3 c3053f1c-f936-4b92-a899-d54448c74d73 07eece8dac2ad38ce0b1dcc69da4b32f {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01672.WXS.T.hg38 C3L-01672 UCEC WXS tumor CPT0172460011 7b548498-e34a-4e42-9213-f4b61db549a5_wxs_gdc_realn.bam 40485656584 BAM harmonized CPTAC3 2f5cb639-8ded-4dd3-99c1-663ced095941 7882ead2f1333017d4fcefbd0cc7b8ee {"aliquot_tag": "ALQ_e82be5df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01676.MethArray.Green.A C3L-01676 CCRCC Methylation_Array tissue_normal CPT0172660007 204373100050_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 357a3467-4eb6-4495-aa4d-ba91edcc1c92 1440733daf9ec7b0920f1119e2fa4894 {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.MethArray.Green.T C3L-01676 CCRCC Methylation_Array tumor CPT0172630006 203219650127_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e195a0fb-b5d9-4183-a063-d13de18ce558 97d0425ee23e94b2f6283d094497699d {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.MethArray.Red.A C3L-01676 CCRCC Methylation_Array tissue_normal CPT0172660007 204373100050_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 01605887-bb1f-4a3b-a8c1-6fb31e0e2e67 d60ac0dd2c29fa3ab27bde802cd621ec {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.MethArray.Red.T C3L-01676 CCRCC Methylation_Array tumor CPT0172630006 203219650127_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 8f1b595d-59ed-4c8e-bcb7-1366a9402d79 d7a2710efd53beef0ffd386248e5a1be {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.miRNA-Seq.A.hg38 C3L-01676 CCRCC miRNA-Seq tissue_normal CPT0172660010 daaa4cda-d850-47f9-a8e0-54d9e81ff020_mirnaseq_gdc_realn.bam 282084382 BAM harmonized CPTAC3 a2a51cc6-0f87-4fc8-87a5-58d04d0788d5 5df1c93fbc310dac3c1bf2d8d8682b50 {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.miRNA-Seq.S28_L005_R1.T C3L-01676 CCRCC miRNA-Seq tumor CPT0172630009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L005_R1_001.unaln.bam 202871219 BAM S28_L005_R1 submitted_unaligned CPTAC3 6eb54d5a-5a1a-4314-b4fa-a1fbd9e39429 b8ef9fc5a144ec4d40161ce2ef8655cd {"aliquot_tag": "ALQ_7ac372d7", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.miRNA-Seq.S7_L004_R1.A C3L-01676 CCRCC miRNA-Seq tissue_normal CPT0172660010 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L004_R1_001.unaln.bam 259140680 BAM S7_L004_R1 submitted_unaligned CPTAC3 028e96a2-13d6-4fca-9119-9105481662b0 17af6c6fe26a139b4302e0ff91f1b487 {"aliquot_tag": "ALQ_d2e47442", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.miRNA-Seq.T.hg38 C3L-01676 CCRCC miRNA-Seq tumor CPT0172630009 73de7a28-0678-4948-b6be-909118a3b666_mirnaseq_gdc_realn.bam 220750088 BAM harmonized CPTAC3 4782b961-a23e-4541-8762-666b4872b20c 327024361f52951577abcac86f2acc99 {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.RNA-Seq.chimeric.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.chimeric.gdc_realn.bam 31848678 BAM chimeric harmonized CPTAC3 bbf9210e-7f08-41a8-9c23-fa694aff216c 5c4001aaaaba85c3b5fd14992f0d8c9c {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.RNA-Seq.chimeric.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.chimeric.gdc_realn.bam 36771874 BAM chimeric harmonized CPTAC3 7ff20692-055c-493b-8ba2-1354c097c27c 048b2f81e7846c7fdd847252da7fd2a1 {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.RNA-Seq.genomic.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.genomic.gdc_realn.bam 8794901139 BAM genomic harmonized CPTAC3 f2e23202-7def-42c4-9bbc-5e5932d81380 f3bf8e5d28823760bd6dfffc9984febb {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.RNA-Seq.genomic.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.genomic.gdc_realn.bam 8153520511 BAM genomic harmonized CPTAC3 6594eadc-77b4-4244-b63c-7bec55ae47d0 2728edb918e57ca6abfde276e65c66ef {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.RNA-Seq.S19_L005_R1.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3941964007 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 ec31cd8d-5b2f-4750-9054-397c28aeb765 f9494c39b9a9f8bc56fda3b50217ec32 {"aliquot_tag": "ALQ_7ac372d7", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.RNA-Seq.S19_L005_R2.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3669981710 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 b553063c-7214-4005-a709-2b5b654793a2 02fa289642cc62cf2bfbfdec44d02767 {"aliquot_tag": "ALQ_7ac372d7", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.RNA-Seq.S6_L008_R1.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3725556577 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 f077dc87-d26e-4e05-b323-58693f76fafa c4d68d4dc44a93bad65f995e92ee43a9 {"aliquot_tag": "ALQ_d2e47442", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.RNA-Seq.S6_L008_R2.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 3900855135 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 de87a9ab-7626-4dae-bb03-68f10e68c9a2 3d3f07687efb9cb3dba9e2a5340fbb39 {"aliquot_tag": "ALQ_d2e47442", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.RNA-Seq.transcriptome.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.transcriptome.gdc_realn.bam 9326080858 BAM transcriptome harmonized CPTAC3 ff953ec8-486c-435c-b2a8-deb138b0be53 397e0f6027b50645e1aa2d5237411cb2 {"aliquot_tag": "ALQ_d2e47442", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.RNA-Seq.transcriptome.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.transcriptome.gdc_realn.bam 10044575740 BAM transcriptome harmonized CPTAC3 a6368e4a-e72d-4b28-9a7b-52c650e2c253 303b249efc715eeead54f85efa9079ad {"aliquot_tag": "ALQ_7ac372d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.WGS.A C3L-01676 CCRCC WGS tissue_normal CPT0172660007 CPT0172660007.WholeGenome.RP-1303.bam 59331331744 BAM submitted_aligned CPTAC3 fd41199f-ac5c-4870-8265-aa02ac939968 88183a12e913b27d30e8ddb5b53b0e68 {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.WGS.A.hg38 C3L-01676 CCRCC WGS tissue_normal CPT0172660007 4a485c4d-1de8-4da1-b84c-5baaba33a343_wgs_gdc_realn.bam 87258780249 BAM harmonized CPTAC3 4b24dd59-07d0-4fdf-8191-b4dca33e4ca2 9879a0de371bcaafe73bb2425ba2f33a {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.WGS.N C3L-01676 CCRCC WGS blood_normal CPT0172830002 CPT0172830002.WholeGenome.RP-1303.bam 55472008185 BAM submitted_aligned CPTAC3 25158770-d2a5-48cf-bcdd-a97f3785437c 41dd701c2fcc3b3d3a06f71b2232dd3a {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01676.WGS.N.hg38 C3L-01676 CCRCC WGS blood_normal CPT0172830002 89a7075e-37f1-4cc5-b8cc-5bb619b9f4f0_wgs_gdc_realn.bam 82233989049 BAM harmonized CPTAC3 2cd2799a-39c1-48c1-82b9-d04200b0474f 7565756b9707b4f3449adbfe3b37dc67 {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01676.WGS.T C3L-01676 CCRCC WGS tumor CPT0172630006 CPT0172630006.WholeGenome.RP-1303.bam 55433955838 BAM submitted_aligned CPTAC3 07a9940a-82dc-4137-adfb-a11873ac8bca 1ff97b342694c07a62468a82f18716be {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.WGS.T.hg38 C3L-01676 CCRCC WGS tumor CPT0172630006 d6aa10d7-ba56-4740-a789-8ce3ee1cffda_wgs_gdc_realn.bam 80963500060 BAM harmonized CPTAC3 980761ef-3600-4972-aa79-f44fba3572e8 5e1aedc9c606cd3d220aae69696ef7a4 {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.WXS.A C3L-01676 CCRCC WXS tissue_normal CPT0172660007 CPT0172660007.WholeExome.RP-1303.bam 23882318238 BAM submitted_aligned CPTAC3 0632dd77-5899-49b7-b2db-873bb33191a9 e4c246dacd9acf6f7bfa05aea6bf2eef {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.WXS.A.hg38 C3L-01676 CCRCC WXS tissue_normal CPT0172660007 4a485c4d-1de8-4da1-b84c-5baaba33a343_wxs_gdc_realn.bam 33033743972 BAM harmonized CPTAC3 274f04e2-6949-4971-9fb7-6b260e349ddb 142ae98d4e53b745b80ad92d04e1930c {"aliquot_tag": "ALQ_559bd0a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01676.WXS.N C3L-01676 CCRCC WXS blood_normal CPT0172830002 CPT0172830002.WholeExome.RP-1303.bam 25765743850 BAM submitted_aligned CPTAC3 c5fbf334-229b-4d10-a720-1401414101dc aece49602c326425d40bad43da278652 {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01676.WXS.N.hg38 C3L-01676 CCRCC WXS blood_normal CPT0172830002 89a7075e-37f1-4cc5-b8cc-5bb619b9f4f0_wxs_gdc_realn.bam 36025813820 BAM harmonized CPTAC3 ff8b64f8-a1ff-4ae1-8944-6137db291d24 6306401149074c9f9aea8dd884c27183 {"aliquot_tag": "ALQ_d71bca2f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01676.WXS.T C3L-01676 CCRCC WXS tumor CPT0172630006 CPT0172630006.WholeExome.RP-1303.bam 31229545360 BAM submitted_aligned CPTAC3 ae93e9fd-d7de-45ac-900a-d42813254f9b 8423947828d1d6063c8ce742bba9978e {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01676.WXS.T.hg38 C3L-01676 CCRCC WXS tumor CPT0172630006 d6aa10d7-ba56-4740-a789-8ce3ee1cffda_wxs_gdc_realn.bam 44029815081 BAM harmonized CPTAC3 d1c60a98-e2c6-4e70-9012-55de7a7280cb 4adeb87c804b22d0c261ba9908063ff5 {"aliquot_tag": "ALQ_ea7c6f46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.MethArray.Green.A C3L-01681 CCRCC Methylation_Array tissue_normal CPT0110770006 204930640041_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a8bd52b4-f853-4648-af06-2da110a127ce 0530d9092af9f32a2f54f5967b5f571c {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.MethArray.Green.T C3L-01681 CCRCC Methylation_Array tumor CPT0110740008 203219640068_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8626f87c-2a54-4ee0-85ca-730077bbaf2e 7b94bc7e7acb43bffb1a785da5515be2 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.MethArray.Red.A C3L-01681 CCRCC Methylation_Array tissue_normal CPT0110770006 204930640041_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 add9de3b-b9da-421b-8aca-3ee237f82b90 21595fa2b3f12f8ee4dad0418581da34 {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.MethArray.Red.T C3L-01681 CCRCC Methylation_Array tumor CPT0110740008 203219640068_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 7c79b027-d3d7-4f90-a550-85ab0d7ec985 705f5517d00b2c48a648be1fca40d5cc {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.miRNA-Seq.A.hg38 C3L-01681 CCRCC miRNA-Seq tissue_normal CPT0110770009 b6a5e4c3-9c33-409f-a91c-f09927496e46_mirnaseq_gdc_realn.bam 195520436 BAM harmonized CPTAC3 0a8c457e-3037-44a8-8deb-0053142eb6aa 0bb8e2317b204799636712c0a1b39735 {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.miRNA-Seq.S10_L002_R1.A C3L-01681 CCRCC miRNA-Seq tissue_normal CPT0110770009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L002_R1_001.unaln.bam 178999558 BAM S10_L002_R1 submitted_unaligned CPTAC3 96903ed9-a6e8-4a4e-9eb2-e1a72f721c9d 64929867675a03f870f92c582800b7bb {"aliquot_tag": "ALQ_15ef1f1c", "sample": "S10", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.miRNA-Seq.S21_L002_R1.T C3L-01681 CCRCC miRNA-Seq tumor CPT0110740005 190108_UNC31-K00269_0176_AHYGLVBBXX_GTTTCG_S21_L002_R1_001.unaln.bam 224730095 BAM S21_L002_R1 submitted_unaligned CPTAC3 2d07cf93-56cf-44bb-9fa2-fcb91f47c33c 3bb1cbaf414e79e43438302ea534e019 {"aliquot_tag": "ALQ_5bf929e7", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.miRNA-Seq.T.hg38 C3L-01681 CCRCC miRNA-Seq tumor CPT0110740005 188a62e5-7279-462f-9183-b6e33c7dcb5a_mirnaseq_gdc_realn.bam 246011848 BAM harmonized CPTAC3 5d808e77-eddd-4b96-9a99-348e480ca12d 91d11c4768f1bd0467963a84fc051ec9 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.RNA-Seq.chimeric.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.chimeric.gdc_realn.bam 168371847 BAM chimeric harmonized CPTAC3 f7864bb8-5a9e-4a18-bff5-916c786002df 548fdcc8fb7bdc809844cfef5974e827 {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.RNA-Seq.chimeric.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.chimeric.gdc_realn.bam 25362326 BAM chimeric harmonized CPTAC3 ebaaec90-cd75-4769-b277-241279624b11 81d455149b3d540c715c5a21d633cdb5 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.RNA-Seq.genomic.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.genomic.gdc_realn.bam 7574739653 BAM genomic harmonized CPTAC3 ab20fbbc-cd8c-4424-bfc4-5273727b3390 39061d9454532644e51bf5b903ead04e {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.RNA-Seq.genomic.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.genomic.gdc_realn.bam 7248781651 BAM genomic harmonized CPTAC3 523e6d0f-0240-4ec3-bf42-bf621e3befdf 4e1d02ab8d0f806a911e050274272272 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.RNA-Seq.S19_L005_R1.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R1_001.fastq.gz 3216346993 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 909a8bf9-8afb-4658-818e-9249d1572e7b 3f327224030881f28b2472b09ac5488a {"aliquot_tag": "ALQ_5bf929e7", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.RNA-Seq.S19_L005_R2.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3622505559 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 d4531d2e-9dc0-4119-8684-94045307a733 cc0aa22f508f06d7f472a1ce3f5662a6 {"aliquot_tag": "ALQ_5bf929e7", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.RNA-Seq.S3_L005_R1.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R1_001.fastq.gz 3297944588 FASTQ S3_L005_R1 submitted_unaligned CPTAC3 608c1ec2-9e22-4426-81d3-3c984c3364e6 9179aaeb0559171f131684b6cb25dbc8 {"aliquot_tag": "ALQ_15ef1f1c", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.RNA-Seq.S3_L005_R2.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R2_001.fastq.gz 3684169657 FASTQ S3_L005_R2 submitted_unaligned CPTAC3 94364a31-4b41-48af-9fe0-ae8ca7d2317b 691473d3773d5fb1f8b9b8cf2062319a {"aliquot_tag": "ALQ_15ef1f1c", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.RNA-Seq.transcriptome.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.transcriptome.gdc_realn.bam 7935237069 BAM transcriptome harmonized CPTAC3 35014a73-3b04-429e-8fed-d3714f2e9af5 1112cb963674fe59d178b6bdc7827e37 {"aliquot_tag": "ALQ_15ef1f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.RNA-Seq.transcriptome.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.transcriptome.gdc_realn.bam 9047242911 BAM transcriptome harmonized CPTAC3 f55f5d96-f96d-407a-be31-0e8a2173f3fe 34cf6b607a1a5576d3b48e1ed46955b9 {"aliquot_tag": "ALQ_5bf929e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.WGS.A C3L-01681 CCRCC WGS tissue_normal CPT0110770006 CPT0110770006.WholeGenome.RP-1303.bam 59572690162 BAM submitted_aligned CPTAC3 9c5dd328-de58-4ca0-9970-9a6ce3367e7a 39b093fe38f25e41ba6c5c8276de737c {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.WGS.A.hg38 C3L-01681 CCRCC WGS tissue_normal CPT0110770006 04fdbf6b-d048-4d4f-b92e-6705a35015da_wgs_gdc_realn.bam 85641191076 BAM harmonized CPTAC3 9bd6246f-f65e-48ff-a227-be1fe643a524 3af39fe0d1c711800652d39a44d37820 {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.WGS.N C3L-01681 CCRCC WGS blood_normal CPT0112350002 CPT0112350002.WholeGenome.RP-1303.bam 58863039638 BAM submitted_aligned CPTAC3 504b1fec-584c-485f-ba4e-ab06c9942a7c 796a790d991d51db9e1fb4fe53e18870 {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01681.WGS.N.hg38 C3L-01681 CCRCC WGS blood_normal CPT0112350002 e7ad9a46-6978-4799-b0cb-f3a3e04f4fd5_wgs_gdc_realn.bam 87050578120 BAM harmonized CPTAC3 ccd12dad-e18b-4520-a3a6-19efce292540 f33ca20df4957047f8376fc30283026a {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01681.WGS.T C3L-01681 CCRCC WGS tumor CPT0110740008 CPT0110740008.WholeGenome.RP-1303.bam 58289105076 BAM submitted_aligned CPTAC3 d36bc2a0-8cf9-426a-83a9-cc919871c709 4cc7610f6aa6cdcf2fdf170ce6020319 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.WGS.T.hg38 C3L-01681 CCRCC WGS tumor CPT0110740008 6071c180-edd1-48e7-b575-e1c5620dae9b_wgs_gdc_realn.bam 85002553513 BAM harmonized CPTAC3 9e7cfa9f-553f-4d13-ae77-652f29acb9a7 404ba3e082e5690667d8cdcecdf0f5c0 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.WXS.A C3L-01681 CCRCC WXS tissue_normal CPT0110770006 CPT0110770006.WholeExome.RP-1303.bam 24015608569 BAM submitted_aligned CPTAC3 f0ddce34-3bb5-4c7e-885a-071232ffdac5 8520603d6de665b4912a5604484e3c0b {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.WXS.A.hg38 C3L-01681 CCRCC WXS tissue_normal CPT0110770006 04fdbf6b-d048-4d4f-b92e-6705a35015da_wxs_gdc_realn.bam 32586461739 BAM harmonized CPTAC3 0e701273-2615-4ea5-b312-55091ed83814 a4196b6717f9a4d370f84db9c18ad7d3 {"aliquot_tag": "ALQ_8550028d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01681.WXS.N C3L-01681 CCRCC WXS blood_normal CPT0112350002 CPT0112350002.WholeExome.RP-1303.bam 20221851968 BAM submitted_aligned CPTAC3 8bcc288e-6b54-42bb-91f6-d646db30c9bd e90e1769ec2c708479423aabed203957 {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01681.WXS.N.hg38 C3L-01681 CCRCC WXS blood_normal CPT0112350002 e7ad9a46-6978-4799-b0cb-f3a3e04f4fd5_wxs_gdc_realn.bam 27592992346 BAM harmonized CPTAC3 0525db50-8a29-4d93-b3d3-636df7427c6c eb232122321dd8054c20f7aa2bd35740 {"aliquot_tag": "ALQ_f4f3c6cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01681.WXS.T C3L-01681 CCRCC WXS tumor CPT0110740008 CPT0110740008.WholeExome.RP-1303.bam 26986109206 BAM submitted_aligned CPTAC3 347619bd-a665-488a-bbd5-ce4623a4fef3 dfd47261b3e404e3d921ad0586e5ce5e {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01681.WXS.T.hg38 C3L-01681 CCRCC WXS tumor CPT0110740008 6071c180-edd1-48e7-b575-e1c5620dae9b_wxs_gdc_realn.bam 36777716326 BAM harmonized CPTAC3 75a28e10-ea97-49d0-9474-c957ad022d9b af0ba4767f1ccebde88baba7eafba3f1 {"aliquot_tag": "ALQ_2548555a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.MethArray.Green.A C3L-01682 LUAD Methylation_Array tissue_normal CPT0110890009 203028200101_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 fb219fb9-bb96-4ca6-84a2-4aa2dd176b33 ab000fa962be01b6cf49831631f4908c {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.MethArray.Green.T C3L-01682 LUAD Methylation_Array tumor CPT0110860010 202234380058_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e2470b4c-a8c8-4bd7-bd00-3b4869774f0c 1643e802b455849f948491ff687b4d35 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.MethArray.Red.A C3L-01682 LUAD Methylation_Array tissue_normal CPT0110890009 203028200101_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 56aa2fb9-3e6a-4ba8-8a86-cac04001b58b a7a781ac8ed8c1c2b6bf0d9822ac8203 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.MethArray.Red.T C3L-01682 LUAD Methylation_Array tumor CPT0110860010 202234380058_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 8d6e719e-9507-4990-ba2f-7a701d53e392 2e65ab69c01def9e2338c6d854161345 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.miRNA-Seq.A.hg38 C3L-01682 LUAD miRNA-Seq tissue_normal CPT0110890006 2a031798-bc6d-4e44-9aa8-efd024562a4b_mirnaseq_gdc_realn.bam 239023129 BAM harmonized CPTAC3 13cb8753-b43d-425f-82fa-363c20b06d8c ee9318051f7497ae87ac7dda5619994f {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.miRNA-Seq.S33_L005_R1.A C3L-01682 LUAD miRNA-Seq tissue_normal CPT0110890006 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L005_R1_001.unaln.bam 214639483 BAM S33_L005_R1 submitted_unaligned CPTAC3 c3e04e60-e7aa-4c4b-b427-ea874cd4e9c7 a9524799061fc369081cc7444efe41b6 {"aliquot_tag": "ALQ_cb360e39", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.miRNA-Seq.S42_L003_R1.T C3L-01682 LUAD miRNA-Seq tumor CPT0110860007 181119_UNC31-K00269_0165_AH27WCBBXY_GTCCGC_S42_L003_R1_001.unaln.bam 188391884 BAM S42_L003_R1 submitted_unaligned CPTAC3 d3d103b3-2591-45c6-a129-25032ab67762 afb45d63762c9074ca1d9de7222af3a6 {"aliquot_tag": "ALQ_3e61a97e", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.miRNA-Seq.T.hg38 C3L-01682 LUAD miRNA-Seq tumor CPT0110860007 8d034691-fdd2-42ea-8cd1-f057530d414f_mirnaseq_gdc_realn.bam 206196176 BAM harmonized CPTAC3 40ae77c1-b150-468e-bf05-8bdf72cff661 3997d306e39eb9b942db34805d35d8c8 {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.RNA-Seq.chimeric.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.chimeric.gdc_realn.bam 129043099 BAM chimeric harmonized CPTAC3 98341ec1-460d-4c92-8ebb-30416caf4422 6ee13a34559033a338def0b9dbe3e073 {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.RNA-Seq.chimeric.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.chimeric.gdc_realn.bam 146727319 BAM chimeric harmonized CPTAC3 b0e6cd52-6c61-49dc-8255-69acf215c65e db89d4fd8cfd0f16dadf408b605005f0 {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.RNA-Seq.genomic.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.genomic.gdc_realn.bam 7968347815 BAM genomic harmonized CPTAC3 feb6007f-ef8e-4541-bef4-f0104ff30a55 209026fbace34f5740c11581e3f0df67 {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.RNA-Seq.genomic.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.genomic.gdc_realn.bam 8356835607 BAM genomic harmonized CPTAC3 b663e8c2-9d45-4d60-b311-1ef89b7f09d4 06e5c8af21f5f0d0b79882378c1572d8 {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.RNA-Seq.S17_L005_R1.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 3717744196 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 283b1517-8776-49a9-a806-0d20a241039f 7e24c4bcddb090cd48c91288f356359e {"aliquot_tag": "ALQ_3e61a97e", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.RNA-Seq.S17_L005_R2.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 3960909708 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 d9c52ed7-9493-4e3e-a21e-3dba392b3c57 332cc0678499a4ad7de5c7bfd3708beb {"aliquot_tag": "ALQ_3e61a97e", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.RNA-Seq.S1_L003_R1.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R1_001.fastq.gz 3788560229 FASTQ S1_L003_R1 submitted_unaligned CPTAC3 9334bab4-7c2b-4cf2-a4c7-d93abab614d7 d6c22de22a59d537c44a0a4d8f80464e {"aliquot_tag": "ALQ_cb360e39", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.RNA-Seq.S1_L003_R2.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R2_001.fastq.gz 4123819563 FASTQ S1_L003_R2 submitted_unaligned CPTAC3 678fb586-7d73-45c1-9180-691619007710 b0e34508c61d1768354cafc5e1931d3e {"aliquot_tag": "ALQ_cb360e39", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.RNA-Seq.transcriptome.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.transcriptome.gdc_realn.bam 9378602137 BAM transcriptome harmonized CPTAC3 388a1231-a9fc-4671-b19f-d5804810cb9f d4cdd53620263ece88da27a35f10067c {"aliquot_tag": "ALQ_cb360e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.RNA-Seq.transcriptome.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.transcriptome.gdc_realn.bam 9515046692 BAM transcriptome harmonized CPTAC3 072ad95e-7852-4536-bc85-2c39f2ed4f9d ddfdbe55069f67d69ed990e454c316dd {"aliquot_tag": "ALQ_3e61a97e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.WGS.A C3L-01682 LUAD WGS tissue_normal CPT0110890009 CPT0110890009.WholeGenome.RP-1303.bam 53869757710 BAM submitted_aligned CPTAC3 fb716f55-ca56-4082-bfa3-3818372ee252 02ce72e78439ca2d6ca1a2f578a1f9d0 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.WGS.A.hg38 C3L-01682 LUAD WGS tissue_normal CPT0110890009 6ac1e42c-c406-45e7-8b33-b63cd943a9e5_wgs_gdc_realn.bam 79217335350 BAM harmonized CPTAC3 79e2c183-5547-4f3c-b003-10cc84e361f9 fc8a93680e7b9e0d82f2c1fae6de57c0 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.WGS.N C3L-01682 LUAD WGS blood_normal CPT0112370002 CPT0112370002.WholeGenome.RP-1303.bam 61560934962 BAM submitted_aligned CPTAC3 7ad390dd-8a7b-4679-bdd8-45fe84201b78 62f7cda6b438d80cb9b81f9aae9a07e8 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01682.WGS.N.hg38 C3L-01682 LUAD WGS blood_normal CPT0112370002 48e1f0b6-8ec2-4192-a798-6d9f6f8ab5b2_wgs_gdc_realn.bam 90215753913 BAM harmonized CPTAC3 019fc47f-94a4-4b17-bfe1-3a84f91efb19 135d1627e2c78b1c34f40e5afcf0d108 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01682.WGS.T C3L-01682 LUAD WGS tumor CPT0110860010 CPT0110860010.WholeGenome.RP-1303.bam 53859947246 BAM submitted_aligned CPTAC3 d2b75177-b40b-4381-bd45-180f6985cf0f bfa2f81b68aea330563859cec08cebe3 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.WGS.T.hg38 C3L-01682 LUAD WGS tumor CPT0110860010 6ce2608b-d1a9-4ad5-b588-b5b746f9307e_wgs_gdc_realn.bam 78347615892 BAM harmonized CPTAC3 495e68f7-8222-4674-9bcb-62b52f116b52 ebd217a095e8b930ac32e9504d037eae {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.WXS.A C3L-01682 LUAD WXS tissue_normal CPT0110890009 CPT0110890009.WholeExome.RP-1303.bam 31950439102 BAM submitted_aligned CPTAC3 f9c480c8-1d0c-4995-9778-ce90388fa084 d428dbc12ad5391396e15bdc0b8bb5f6 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.WXS.A.hg38 C3L-01682 LUAD WXS tissue_normal CPT0110890009 6ac1e42c-c406-45e7-8b33-b63cd943a9e5_wxs_gdc_realn.bam 44139925893 BAM harmonized CPTAC3 a7137df5-0292-44b3-bab4-759718de311e 7d135727612f4eaa24715b154f58ffc6 {"aliquot_tag": "ALQ_5b8913a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01682.WXS.N C3L-01682 LUAD WXS blood_normal CPT0112370002 CPT0112370002.WholeExome.RP-1303.bam 38544868015 BAM submitted_aligned CPTAC3 0712cbb8-c37a-4e92-8309-66e62838d4f5 4922892ce3eb240a55ec3e244f6f5855 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01682.WXS.N.hg38 C3L-01682 LUAD WXS blood_normal CPT0112370002 48e1f0b6-8ec2-4192-a798-6d9f6f8ab5b2_wxs_gdc_realn.bam 52634128339 BAM harmonized CPTAC3 53086b68-387b-472c-a6d6-518f32328be7 4b0c9ad94335a9b89f82d00cef0dc222 {"aliquot_tag": "ALQ_8e3395ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01682.WXS.T C3L-01682 LUAD WXS tumor CPT0110860010 CPT0110860010.WholeExome.RP-1303.bam 39888154698 BAM submitted_aligned CPTAC3 eee1da64-ae5d-49ad-b7fe-279a424c1222 6eedf83bef526e04506d58adcafcd705 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01682.WXS.T.hg38 C3L-01682 LUAD WXS tumor CPT0110860010 6ce2608b-d1a9-4ad5-b588-b5b746f9307e_wxs_gdc_realn.bam 53997971540 BAM harmonized CPTAC3 0d294e19-0b54-4b90-b951-b4517c8c6270 0c60317fa268ade14a906364ae3a9b09 {"aliquot_tag": "ALQ_b91e0d9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.MethArray.Green.A C3L-01683 LUAD Methylation_Array tissue_normal CPT0111590009 203027390105_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5e2ed43a-0af9-4b76-8dba-29489f7df007 c79ce508c83fa17d6c0f78108407def8 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.MethArray.Green.T C3L-01683 LUAD Methylation_Array tumor CPT0110980010 202234370119_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 85c30e11-d9f0-421b-bdd6-7390cd27bd5c 716c13a8131df8d9aaef7b0f73f6f165 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.MethArray.Red.A C3L-01683 LUAD Methylation_Array tissue_normal CPT0111590009 203027390105_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 23ede73f-c93f-41c2-92a7-064e08d196b1 70a5e43eba003cee8bff621ffd1df585 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.MethArray.Red.T C3L-01683 LUAD Methylation_Array tumor CPT0110980010 202234370119_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 ef87fae7-a6c9-4281-9f4f-600aa37b0042 95836b2028ee83ebb23c5b1cc0782853 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.miRNA-Seq.A.hg38 C3L-01683 LUAD miRNA-Seq tissue_normal CPT0111590006 752396fa-1755-4613-b234-4ef886a0635c_mirnaseq_gdc_realn.bam 248139481 BAM harmonized CPTAC3 3447fbff-e1d8-4350-95db-6a3f29035d45 76bd778e7a8a3a01a6fd174cbc0bfbdb {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.miRNA-Seq.S19_L007_R1.A C3L-01683 LUAD miRNA-Seq tissue_normal CPT0111590006 181108_UNC31-K00269_0162_AH255GBBXY_TACAGC_S19_L007_R1_001.unaln.bam 223682067 BAM S19_L007_R1 submitted_unaligned CPTAC3 0560df4c-1cd1-40e7-80b6-db4e5a8b4f3f 9b2e3fd134400ff049b1c3d409fa4af1 {"aliquot_tag": "ALQ_d1df1653", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.miRNA-Seq.S43_L003_R1.T C3L-01683 LUAD miRNA-Seq tumor CPT0110980007 181119_UNC31-K00269_0165_AH27WCBBXY_GTGAAA_S43_L003_R1_001.unaln.bam 227936822 BAM S43_L003_R1 submitted_unaligned CPTAC3 89c501f8-d22e-44c7-968a-0d05c2ea72d5 4d9e5ecc7ce00f2f6fc2f17eac9a046b {"aliquot_tag": "ALQ_4a0dc4ba", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.miRNA-Seq.T.hg38 C3L-01683 LUAD miRNA-Seq tumor CPT0110980007 68464e96-7107-406d-a855-112871d0b621_mirnaseq_gdc_realn.bam 247744610 BAM harmonized CPTAC3 256b3937-bad2-4d41-8d5f-12645155a1ac 4a613dbc1f9a6d997cde9020d0eb90d8 {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.RNA-Seq.chimeric.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.chimeric.gdc_realn.bam 78533877 BAM chimeric harmonized CPTAC3 c7a6f0fe-c7af-4c2d-b059-65b975e2fa8b c82d203c31084704232a7e37d93e2611 {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.RNA-Seq.chimeric.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.chimeric.gdc_realn.bam 89356086 BAM chimeric harmonized CPTAC3 68e66c3b-989e-4d02-8aac-02632aa1178e 5cabe2a78de27429165df2820188b6fe {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.RNA-Seq.genomic.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.genomic.gdc_realn.bam 9116261795 BAM genomic harmonized CPTAC3 7da7a8a9-e817-42d7-8ff5-b709164c336c 0166b8928793added1a7814f7f21f441 {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.RNA-Seq.genomic.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.genomic.gdc_realn.bam 10026209133 BAM genomic harmonized CPTAC3 5ec371ad-e9b2-4ba9-a14d-c0d8f3ee765d 293829018d56eb3e0e2d56e9f4a6f005 {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.RNA-Seq.S16_L005_R1.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R1_001.fastq.gz 4185079045 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 8ae50b60-0799-4883-9569-f4cca6b21954 f51b87dc113969a9095c3eaf8dfd963e {"aliquot_tag": "ALQ_4a0dc4ba", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.RNA-Seq.S16_L005_R2.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4637712849 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 cefddaae-c3db-4a31-925a-32c6dc095613 550d2f1011ee4dbb71d37fb725cf3c00 {"aliquot_tag": "ALQ_4a0dc4ba", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.RNA-Seq.S3_L001_R1.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4215965437 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 7747f420-f998-412b-b1d4-cdd41c2d2b87 8b5944aa42f885febf2ef1c50d355316 {"aliquot_tag": "ALQ_d1df1653", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.RNA-Seq.S3_L001_R2.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4713960213 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 f797dd82-4b0f-4bac-b00b-e03ef2ecbec9 efbe3761f3fd232510b87d92a46c974e {"aliquot_tag": "ALQ_d1df1653", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.RNA-Seq.transcriptome.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.transcriptome.gdc_realn.bam 10419663043 BAM transcriptome harmonized CPTAC3 f5a8d8fc-96b1-4c24-a73f-5c420357bb88 c00548c49fc5fa69ea3e812379cc7f33 {"aliquot_tag": "ALQ_d1df1653", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.RNA-Seq.transcriptome.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.transcriptome.gdc_realn.bam 10160365080 BAM transcriptome harmonized CPTAC3 bddff0d4-d93d-49bf-907f-405fef141ea1 cae68a62ceda2b30e03a81ea1585f3a5 {"aliquot_tag": "ALQ_4a0dc4ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.Targeted.T C3L-01683 LUAD Targeted_Sequencing tumor CPT0110980010 CPT0110980010.CustomSelection.RP-1303.PDO-18786.bam 6328057921 BAM submitted_aligned CPTAC3 32e32b84-b915-48f1-9b3c-7c34f27c3644 22616d8aba00b738e44d121620ed8823 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.Targeted.T.hg38 C3L-01683 LUAD Targeted_Sequencing tumor CPT0110980010 aaf33d60-8d89-4373-9f8e-1514cf2bf2ec_targetedsequencing_gdc_realn.bam 8776211007 BAM harmonized CPTAC3 6ce8de38-0e11-48d7-9c2d-1c5f4ab39c47 12bcd9f9975e556e6e9827f30c19395e {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.WGS.A C3L-01683 LUAD WGS tissue_normal CPT0111590009 CPT0111590009.WholeGenome.RP-1303.bam 62288927899 BAM submitted_aligned CPTAC3 b158f4bc-197a-481c-9520-a4aca3f30a83 e7df43b9b44ca031e2194c7be35eb623 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.WGS.A.hg38 C3L-01683 LUAD WGS tissue_normal CPT0111590009 361abfae-63f8-4950-94d6-d9301022b9d9_wgs_gdc_realn.bam 91346505851 BAM harmonized CPTAC3 70279bd0-28f5-4353-adf4-745d958ff8ad c92958dbaeeaf317fa8b603e64623766 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.WGS.N C3L-01683 LUAD WGS blood_normal CPT0112390002 CPT0112390002.WholeGenome.RP-1303.bam 58402661655 BAM submitted_aligned CPTAC3 6429d570-adcb-47f4-afe1-572a90ec4484 89494c1c5ade795b9fe828bbabb3a5a2 {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01683.WGS.N.hg38 C3L-01683 LUAD WGS blood_normal CPT0112390002 4b0c9eb2-41c6-4dee-8f50-05493e5cae42_wgs_gdc_realn.bam 85536536289 BAM harmonized CPTAC3 da75beb8-878b-472e-a0bb-86b06f1c468b 689ad8f0bdf464a6b911f7487589640c {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01683.WGS.T C3L-01683 LUAD WGS tumor CPT0110980010 CPT0110980010.WholeGenome.RP-1303.bam 51773085909 BAM submitted_aligned CPTAC3 1f09ba6c-8d4f-49a3-973f-3cf25690999d 0de0cae8026b0a04bd55eaecfefb51cc {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.WGS.T.hg38 C3L-01683 LUAD WGS tumor CPT0110980010 aaf33d60-8d89-4373-9f8e-1514cf2bf2ec_wgs_gdc_realn.bam 77053495470 BAM harmonized CPTAC3 a9598aa7-bcca-4dde-910f-5ee315ff16a4 ddf05d48bbb76756cb37baf715a3b774 {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.WXS.A C3L-01683 LUAD WXS tissue_normal CPT0111590009 CPT0111590009.WholeExome.RP-1303.bam 25474473530 BAM submitted_aligned CPTAC3 6b4ad8ab-f8b4-4b5f-9d6a-cf89e087ec61 fb505b8ad3c2e402a2d93c5db12dfeb9 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.WXS.A.hg38 C3L-01683 LUAD WXS tissue_normal CPT0111590009 361abfae-63f8-4950-94d6-d9301022b9d9_wxs_gdc_realn.bam 34678766575 BAM harmonized CPTAC3 b6f8a71c-4c18-4802-86fa-63fd5dbb2d73 5dd09ca16273843b533d8242f48be803 {"aliquot_tag": "ALQ_41600bc2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01683.WXS.N C3L-01683 LUAD WXS blood_normal CPT0112390002 CPT0112390002.WholeExome.RP-1303.bam 35992690582 BAM submitted_aligned CPTAC3 c0f1ac4e-c7ce-41aa-90c5-08ed263fecb9 16ac6af64bb08a8f117ea480e3038703 {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01683.WXS.N.hg38 C3L-01683 LUAD WXS blood_normal CPT0112390002 4b0c9eb2-41c6-4dee-8f50-05493e5cae42_wxs_gdc_realn.bam 49176119220 BAM harmonized CPTAC3 c794fbcc-e3c1-4bc7-b627-bd941df92fa2 36ef7056c55306296620f0c7d9860ab6 {"aliquot_tag": "ALQ_31032bca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01683.WXS.T C3L-01683 LUAD WXS tumor CPT0110980010 CPT0110980010.WholeExome.RP-1303.bam 31019292341 BAM submitted_aligned CPTAC3 05714eed-81f0-48c4-9219-3dd152fad062 5e6687df85e57a30d45f9721e9e50dcc {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01683.WXS.T.hg38 C3L-01683 LUAD WXS tumor CPT0110980010 aaf33d60-8d89-4373-9f8e-1514cf2bf2ec_wxs_gdc_realn.bam 41752200762 BAM harmonized CPTAC3 921e71d0-4543-4669-b2bb-82b6039f5927 d9dfdef94a0a42c5b9494ef28d2d7c3a {"aliquot_tag": "ALQ_cd726058", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.ADD_7b25c879.MethArray.Green.T C3L-01687 PDA Methylation_Array tumor CPT0094630010 202234370091_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9bf7f925-8f47-492b-80a0-2e90cf68d773 063cbe0d1a3059ccd4f67f65c7e653e9 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.ADD_7b25c879.MethArray.Red.T C3L-01687 PDA Methylation_Array tumor CPT0094630010 202234370091_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 0cf7d962-68c5-4e53-98af-8e1c93ac7b31 9f36c9e3fcc613c8a15f1c5d44a96999 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.ADD_7b25c879.WGS.T C3L-01687 PDA WGS tumor CPT0094630010 CPT0094630010.WholeGenome.RP-1303.bam 64067472974 BAM submitted_aligned CPTAC3 4d66b8e3-e6bc-46cf-8270-63462a2fc99e ab5ebee495fe0ea6a39c768bb7a77169 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.ADD_7b25c879.WGS.T.hg38 C3L-01687 PDA WGS tumor CPT0094630010 c1d8b688-7c23-466a-8885-f6fa38811bac_wgs_gdc_realn.bam 95381576935 BAM harmonized CPTAC3 fb2c5c36-3522-435b-956e-5a141c175fa8 e3da622294804d05283b80b77461422c {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.ADD_7b25c879.WXS.T C3L-01687 PDA WXS tumor CPT0094630010 CPT0094630010.WholeExome.RP-1303.bam 43732761409 BAM submitted_aligned CPTAC3 777f06c3-5b2d-4fdc-bbff-e310b656485d 639ae4d9d142bd79fc7a5e021b907261 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.ADD_7b25c879.WXS.T.hg38 C3L-01687 PDA WXS tumor CPT0094630010 c1d8b688-7c23-466a-8885-f6fa38811bac_wxs_gdc_realn.bam 60376134555 BAM harmonized CPTAC3 f1631497-e49f-4e81-a80a-a79d521e3fdd d7ae3e411cd2cc8971aeb8bd92712301 {"aliquot_tag": "ADD_7b25c879", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.miRNA-Seq.S7_L006_R1.T C3L-01687 PDA miRNA-Seq tumor CPT0094630007 180828_UNC32-K00270_0112_AHWTLNBBXX_ATGTCA_S7_L006_R1_001.unaln.bam 275072884 BAM S7_L006_R1 submitted_unaligned CPTAC3 5f576970-48a9-4e50-ae00-b0cb6ef0ed7a 458dc48f76cfc9446f72f0e83c6ed9ae {"aliquot_tag": "ALQ_fc5a6c9b", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.miRNA-Seq.T.hg38 C3L-01687 PDA miRNA-Seq tumor CPT0094630007 4f465a6a-7726-486b-9a47-0d9ba0f7054c_mirnaseq_gdc_realn.bam 306088175 BAM harmonized CPTAC3 8795eac6-d7ec-4d20-8ad2-363ff7f85087 a6a415c370ceafb5c1f6534628e84ba1 {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.RNA-Seq.chimeric.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.chimeric.gdc_realn.bam 33935122 BAM chimeric harmonized CPTAC3 ebd09d53-df7b-4356-a8c5-860525215a38 3f36b711f36fb96467903e5a1e22dba7 {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.RNA-Seq.genomic.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.genomic.gdc_realn.bam 8774793417 BAM genomic harmonized CPTAC3 0508ba6b-1018-4eeb-ab86-9c9e7b89dd32 9d5594f42142c427351abd59785e3e3e {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.RNA-Seq.S1_L007_R1.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3954237874 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 9545cf4f-5b01-43a6-b003-ef20185af5e4 a9d5e104750661c71c0f822e525809b3 {"aliquot_tag": "ALQ_fc5a6c9b", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.RNA-Seq.S1_L007_R2.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R2_001.fastq.gz 4265724748 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 bad2a3a3-78be-44a8-906a-1572ebf2422c 9fe6d12fa3f7d6f897dec2a8cf78a2da {"aliquot_tag": "ALQ_fc5a6c9b", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.RNA-Seq.transcriptome.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.transcriptome.gdc_realn.bam 10172760667 BAM transcriptome harmonized CPTAC3 f4ed9934-7403-4a56-a834-0a23dfedc6ef ff6f9caf637da6998f775fdf24436a3d {"aliquot_tag": "ALQ_fc5a6c9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.Targeted.T C3L-01687 PDA Targeted_Sequencing tumor CPT0094630010_1 CPT0094630010_1.CustomSelection.RP-1303.PDO-18786.bam 6042277368 BAM submitted_aligned CPTAC3 8b005314-53d4-4033-9b22-99bf08de8bb4 75ca37707163d3e3c567e55e92c9108a {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.Targeted.T.hg38 C3L-01687 PDA Targeted_Sequencing tumor CPT0094630010_1 8f41faed-4885-470d-999b-4d4944b7eb8b_targetedsequencing_gdc_realn.bam 8588382403 BAM harmonized CPTAC3 8f28ad35-3a3f-4234-9080-b4775bfe3600 2852a8eb6f87bfb5a201dcecc83ca9ac {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.WGS.N C3L-01687 PDA WGS blood_normal CPT0094670002 CPT0094670002.WholeGenome.RP-1303.bam 59918366925 BAM submitted_aligned CPTAC3 d59ddcea-7cbb-46c2-bb05-88a1b82da943 24f8e408bc7949d9c801d06083d68c43 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01687.WGS.N.hg38 C3L-01687 PDA WGS blood_normal CPT0094670002 e1a71e63-7248-4ca7-a7a5-be2a7c90de9f_wgs_gdc_realn.bam 90074313556 BAM harmonized CPTAC3 1f705ea1-bfc3-4ef4-9471-861e4105d2cd 4402f5504d60a5daea49fdc8708a9041 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01687.WXS.N C3L-01687 PDA WXS blood_normal CPT0094670002 CPT0094670002.WholeExome.RP-1303.bam 31470431551 BAM submitted_aligned CPTAC3 b72b4257-f1c5-4fdf-ac21-9e7311fb7cc7 f32cc526443e1fa820b4ada479dc73c7 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01687.WXS.N.hg38 C3L-01687 PDA WXS blood_normal CPT0094670002 e1a71e63-7248-4ca7-a7a5-be2a7c90de9f_wxs_gdc_realn.bam 43745579904 BAM harmonized CPTAC3 94700395-e6b7-424a-aefd-5004e6dd355d 3ab33096a30126a12f29227284a87009 {"aliquot_tag": "ALQ_79b03ed4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01687.WXS.T C3L-01687 PDA WXS tumor CPT0094630010_1 CPT0094630010_1.WholeExome.RP-1303.bam 66577887109 BAM submitted_aligned CPTAC3 3273a7e8-466f-44b2-aadb-1b6477c36066 0ea9ff414e792e92f2cc285ceda3989c {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01687.WXS.T.hg38 C3L-01687 PDA WXS tumor CPT0094630010_1 8f41faed-4885-470d-999b-4d4944b7eb8b_wxs_gdc_realn.bam 91626753914 BAM harmonized CPTAC3 eb0e7968-bb03-4b70-9b0f-75f724afd227 134e669f4ccad6d2f35e67e0cc2b4026 {"aliquot_tag": "ALQ_4666a046", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.ADD_259c7cc.MethArray.Green.T C3L-01689 PDA Methylation_Array tumor CPT0094740010 202234380062_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d5168e96-b2d1-4ddf-80ff-07e54c04c511 e6c78b55bc9c20a290b98a6877d688d4 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.ADD_259c7cc.MethArray.Red.T C3L-01689 PDA Methylation_Array tumor CPT0094740010 202234380062_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 4fe5994c-9ba5-41d2-8124-759aad6ad09e b6291088ac3acc3e58b66f296418ba05 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.ADD_259c7cc.WGS.T C3L-01689 PDA WGS tumor CPT0094740010 CPT0094740010.WholeGenome.RP-1303.bam 73456602702 BAM submitted_aligned CPTAC3 f8165680-b07f-4708-a3e8-e97af131b4fd 4e22dc94ef615a543c444b230ff26042 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.ADD_259c7cc.WGS.T.hg38 C3L-01689 PDA WGS tumor CPT0094740010 9c14f2c0-7b52-4168-8622-3dea77dc1c8c_wgs_gdc_realn.bam 108304178142 BAM harmonized CPTAC3 7e8efdd4-7fad-4e46-aa74-5e1bf4b2f149 07128dd863255b7f6ebb6577fbca80b3 {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.ADD_259c7cc.WXS.T C3L-01689 PDA WXS tumor CPT0094740010 CPT0094740010.WholeExome.RP-1303.bam 35996325264 BAM submitted_aligned CPTAC3 e23087d7-1fd1-40d7-9480-d756b398de93 9c3384701d5052e7efbbcaa0abcc6dfc {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.ADD_259c7cc.WXS.T.hg38 C3L-01689 PDA WXS tumor CPT0094740010 9c14f2c0-7b52-4168-8622-3dea77dc1c8c_wxs_gdc_realn.bam 49728274691 BAM harmonized CPTAC3 fda1347e-80b9-4cac-ab47-d6625b0fed2f f12ef1dd33e48b7e63003d88ba70413d {"aliquot_tag": "ADD_259c7cc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.MethArray.Green.A C3L-01689 PDA Methylation_Array tissue_normal CPT0094760006 203561450025_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8d6337ec-3e04-4302-9a12-46473942c8d4 2fa6749bc5f732aeae6fbf407099fab5 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.MethArray.Red.A C3L-01689 PDA Methylation_Array tissue_normal CPT0094760006 203561450025_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 6628ff3f-ced2-44ba-98f1-b97790950cd4 b68413f489ac78cd9f492c45b55ac121 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.miRNA-Seq.A.hg38 C3L-01689 PDA miRNA-Seq tissue_normal CPT0094760009 6020a21d-600e-483b-81f8-cfee57009e80_mirnaseq_gdc_realn.bam 227635769 BAM harmonized CPTAC3 cd0d1fb0-f328-4498-97d0-6c20795379ba b208ee543105575f2f24fad0b10be4b6 {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.miRNA-Seq.S22_L001_R1.A C3L-01689 PDA miRNA-Seq tissue_normal CPT0094760009 181108_UNC31-K00269_0162_AH255GBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 200019046 BAM S22_L001_R1 submitted_unaligned CPTAC3 7d72c29e-97f0-4518-9fc3-757049274b7f 2b465238eb477e928b10a6cdc43c7be1 {"aliquot_tag": "ALQ_185e1d49", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.miRNA-Seq.S8_L006_R1.T C3L-01689 PDA miRNA-Seq tumor CPT0094740007 180828_UNC32-K00270_0112_AHWTLNBBXX_CCGTCC_S8_L006_R1_001.unaln.bam 267704212 BAM S8_L006_R1 submitted_unaligned CPTAC3 8a60cbfb-3cfe-4d46-a90e-e13bf0c6dae5 56342d5cce78fa7f1c3808cc42d86d0b {"aliquot_tag": "ALQ_8526632e", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.miRNA-Seq.T.hg38 C3L-01689 PDA miRNA-Seq tumor CPT0094740007 293a311e-ac24-4afa-a7ad-d5e0b261bd70_mirnaseq_gdc_realn.bam 296343268 BAM harmonized CPTAC3 60a8ea10-52e3-46af-a979-5b312f6752c8 8bc79d0cbda06565a6b4f756f784853f {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.RNA-Seq.chimeric.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.chimeric.gdc_realn.bam 56173937 BAM chimeric harmonized CPTAC3 7ba26246-9eda-48ed-9395-1b48443b55e5 b4b83b0514141826dd6092ae5c4664b3 {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.RNA-Seq.chimeric.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.chimeric.gdc_realn.bam 51591775 BAM chimeric harmonized CPTAC3 e02c7c12-09ec-472c-9edc-51771507af9a 5f8671cf8473f3da766d88afbf348db6 {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.RNA-Seq.genomic.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.genomic.gdc_realn.bam 12241655876 BAM genomic harmonized CPTAC3 7851b824-ed1c-4d77-95a1-2b723fbd3cdb cf81ffc8ebfba4afd3dc1b8f34ab087b {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.RNA-Seq.genomic.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.genomic.gdc_realn.bam 9680847491 BAM genomic harmonized CPTAC3 9f10c714-81a4-4ea3-8310-85770c84720f 34a40554e2945c6d1affabad56deaa74 {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.RNA-Seq.S1_L008_R1.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R1_001.fastq.gz 4885591906 FASTQ S1_L008_R1 submitted_unaligned CPTAC3 2e215877-8133-4956-9365-afcc86b208e6 e842830b60c4b842aa66e50b9376427d {"aliquot_tag": "ALQ_185e1d49", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.RNA-Seq.S1_L008_R2.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R2_001.fastq.gz 5133168728 FASTQ S1_L008_R2 submitted_unaligned CPTAC3 dcb43335-d796-4abf-b95e-0519563eba77 e67e79c73b1d85f37c5f6bc9c0823ef3 {"aliquot_tag": "ALQ_185e1d49", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.RNA-Seq.S4_L007_R1.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R1_001.fastq.gz 4423527277 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 c6fa2be8-70e6-4a3b-82a4-911ee2a935c7 54499d4be416ef66178ba2c775e33d78 {"aliquot_tag": "ALQ_8526632e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.RNA-Seq.S4_L007_R2.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R2_001.fastq.gz 4577352236 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 314c5ece-ac0c-43cb-9cb9-5074c5ddd17f f87675967cee23ae83412a17ed448dfb {"aliquot_tag": "ALQ_8526632e", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.RNA-Seq.transcriptome.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.transcriptome.gdc_realn.bam 10923965553 BAM transcriptome harmonized CPTAC3 870a6366-9bcd-4d0e-82b9-fe01900087c1 bf2205782952edcd55e0682a6c43fcb6 {"aliquot_tag": "ALQ_185e1d49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.RNA-Seq.transcriptome.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.transcriptome.gdc_realn.bam 11964216053 BAM transcriptome harmonized CPTAC3 069c257d-c29a-416b-9705-79d1b31b8946 3cfd0cf16d54a2ac0ac903c9df01569b {"aliquot_tag": "ALQ_8526632e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.Targeted.T C3L-01689 PDA Targeted_Sequencing tumor CPT0094740010_1 CPT0094740010_1.CustomSelection.RP-1303.PDO-18786.bam 4439399359 BAM submitted_aligned CPTAC3 70c010c1-3ea8-428e-9e88-afb515b48312 03ab59b65576a0388510c0682f97ecee {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.Targeted.T.hg38 C3L-01689 PDA Targeted_Sequencing tumor CPT0094740010_1 70a35058-7366-48fe-9d20-279e5067a318_targetedsequencing_gdc_realn.bam 6083786730 BAM harmonized CPTAC3 605039a3-c9c3-405f-ae49-211caaf8cfc0 26d9285b247ef641f46b2baa99bf941a {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.WGS.A C3L-01689 PDA WGS tissue_normal CPT0094760006 CPT0094760006.WholeGenome.RP-1303.bam 63001515275 BAM submitted_aligned CPTAC3 a1898ab0-2eb1-4f32-ab8e-079c0537e1d0 da3adc3f889dcd4ebc30d7c8ad866407 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.WGS.A.hg38 C3L-01689 PDA WGS tissue_normal CPT0094760006 956c67e8-45fd-4182-adde-a1f05cbfc38d_wgs_gdc_realn.bam 93123693968 BAM harmonized CPTAC3 5436e6cd-254a-4c6c-9774-9e794fb1104e 14e8281e22d52e02f9bb3ede6f979fb2 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.WGS.N C3L-01689 PDA WGS blood_normal CPT0094770002 CPT0094770002.WholeGenome.RP-1303.bam 60299258990 BAM submitted_aligned CPTAC3 2af53dea-8364-4253-8427-c9441ee4f662 f84cb711fb665d0097e096ace27f2778 {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01689.WGS.N.hg38 C3L-01689 PDA WGS blood_normal CPT0094770002 46e8ae07-a169-4f32-b287-765baebdb791_wgs_gdc_realn.bam 88927334534 BAM harmonized CPTAC3 e39d2edb-7a85-49c1-bafd-9ed460b73941 b90739ced10f36da759036a4ee28218e {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01689.WXS.A C3L-01689 PDA WXS tissue_normal CPT0094760006 CPT0094760006.WholeExome.RP-1303.bam 25392784181 BAM submitted_aligned CPTAC3 bffe1464-9611-4005-bfc2-f4f0b0976050 4613499ab6af9ffc87e5bab04dd64d36 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.WXS.A.hg38 C3L-01689 PDA WXS tissue_normal CPT0094760006 956c67e8-45fd-4182-adde-a1f05cbfc38d_wxs_gdc_realn.bam 34356297034 BAM harmonized CPTAC3 ae0b772c-cb89-4b3e-b335-42118c516745 c1318deeb864d1c18c7e8ba4fbce23b9 {"aliquot_tag": "ALQ_88e100d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01689.WXS.N C3L-01689 PDA WXS blood_normal CPT0094770002 CPT0094770002.WholeExome.RP-1303.bam 46245118461 BAM submitted_aligned CPTAC3 f01c91c8-f14b-433e-8085-acdcedc77e32 b28f0157e05e40d39bf36312df385bba {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01689.WXS.N.hg38 C3L-01689 PDA WXS blood_normal CPT0094770002 46e8ae07-a169-4f32-b287-765baebdb791_wxs_gdc_realn.bam 64223755589 BAM harmonized CPTAC3 642cddf7-2f67-4d03-9635-06c554458f3c fa235e4d741a8bb10d3a65b5f8af2caf {"aliquot_tag": "ALQ_b2eced71", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01689.WXS.T C3L-01689 PDA WXS tumor CPT0094740010_1 CPT0094740010_1.WholeExome.RP-1303.bam 63058697539 BAM submitted_aligned CPTAC3 00bf0247-9154-461a-ba35-264fb2cb6687 0b346609719287308266ff0043185737 {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01689.WXS.T.hg38 C3L-01689 PDA WXS tumor CPT0094740010_1 70a35058-7366-48fe-9d20-279e5067a318_wxs_gdc_realn.bam 86331664244 BAM harmonized CPTAC3 84b33e50-751c-41df-a998-e13d2d37eed0 1cb7b06936f48ed62bea4726d3ce80a7 {"aliquot_tag": "ALQ_4f6b9e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01694.MethArray.Green.Tpb C3L-01694 AML Methylation_Array tumor_peripheral_blood CPT0340290002 205987770157_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 48156c23-8317-497f-a605-f8a66b6c22bc d9757abe7b3856c763fcaf91becb14f9 {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.MethArray.Red.Tpb C3L-01694 AML Methylation_Array tumor_peripheral_blood CPT0340290002 205987770157_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 dbffa38d-f416-45c3-9131-abedc39db0e9 696f71e78308dfa0a99cf160d51f8f5f {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.miRNA-Seq.S2_L001_R1.Tpb C3L-01694 AML miRNA-Seq tumor_peripheral_blood CPT0340300002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATCACG_S2_L001_R1_001.unaln.bam 189361792 BAM S2_L001_R1 submitted_unaligned CPTAC3 2155728d-fbac-4451-9b0b-107fa7725bb6 ab8f08c58a583b408187ad638697e25d {"aliquot_tag": "ALQ_cd9a7e70", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.miRNA-Seq.Tpb.hg38 C3L-01694 AML miRNA-Seq tumor_peripheral_blood CPT0340300002 8d58eaa9-17bb-49a0-a318-79716ba9e98f_mirnaseq_gdc_realn.bam 208032669 BAM harmonized CPTAC3 87984535-3a20-458a-a4d0-64320baac44a 6a601eeace0214fa8f305da9ca11f8a8 {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.RNA-Seq.chimeric.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.chimeric.gdc_realn.bam 768880379 BAM chimeric harmonized CPTAC3 0944b400-af0f-4325-844b-cf3428029bf6 48ff1836d4fa88d9c00a87a5c82167e5 {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.RNA-Seq.genomic.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.genomic.gdc_realn.bam 7955895641 BAM genomic harmonized CPTAC3 02e9515d-6f20-4bff-a425-f93ec92c05c8 f982bc482c750aac19707d3317cf34ce {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.RNA-Seq.S25_L007_R1.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R1_001.fastq.gz 3641677214 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 c23e84a2-04e9-43f2-985b-066d931b4eb6 9c80e939fd70eda7d92249e404905283 {"aliquot_tag": "ALQ_cd9a7e70", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.RNA-Seq.S25_L007_R2.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R2_001.fastq.gz 3955993600 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 9495c32c-577f-4f2d-b673-9a76a4830300 8f3928807d30f4e34f3c5c3aa09818e8 {"aliquot_tag": "ALQ_cd9a7e70", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.RNA-Seq.transcriptome.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.transcriptome.gdc_realn.bam 5977978782 BAM transcriptome harmonized CPTAC3 e899a5f8-a05a-4649-af17-a515e6707883 58ab4b032c5659eab627a89a462f66eb {"aliquot_tag": "ALQ_cd9a7e70", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.WGS.Nbc C3L-01694 AML WGS buccal_normal CPT0340260002 CPT0340260002.WholeGenome.RP-2158.bam 45058029150 BAM submitted_aligned CPTAC3 d23ef466-36f2-485c-8ca0-a5c8ac78628e a324d7b30f0532a3bd55f840fe7caa86 {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01694.WGS.Nbc.hg38 C3L-01694 AML WGS buccal_normal CPT0340260002 5d684f4c-80fc-44b7-926a-af49366523b2_wgs_gdc_realn.bam 136284225494 BAM harmonized CPTAC3 f0e9d729-028a-44d1-938a-8c48e13b96da 8cef655714b2ca92c8f7c8276f347a0d {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01694.WGS.Tpb C3L-01694 AML WGS tumor_peripheral_blood CPT0340290002 CPT0340290002.WholeGenome.RP-2158.bam 45406211217 BAM submitted_aligned CPTAC3 fd0bf4c3-3cdd-466e-881b-892b1f699a21 6be1481d176cd14b000b8d46be88ded7 {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.WGS.Tpb.hg38 C3L-01694 AML WGS tumor_peripheral_blood CPT0340290002 6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wgs_gdc_realn.bam 138048227737 BAM harmonized CPTAC3 98a43f31-aa70-4a90-aad4-4f12a5fad7ab 1793e87c5204e5f42dc7d24818cbf6b8 {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.WXS.Nbc C3L-01694 AML WXS buccal_normal CPT0340260002 CPT0340260002.WholeExome.RP-1303.bam 26013305775 BAM submitted_aligned CPTAC3 573d421a-41ab-4cea-a4b7-867f77741f5f 8d2b1d5cc72d4c848557457a6d70fc53 {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01694.WXS.Nbc.hg38 C3L-01694 AML WXS buccal_normal CPT0340260002 5d684f4c-80fc-44b7-926a-af49366523b2_wxs_gdc_realn.bam 35293704480 BAM harmonized CPTAC3 07fdceb1-5120-4aa7-b3ff-6f3e17d6fa7f 578de5efc0c76e55f2a7e3e50d0dc88e {"aliquot_tag": "ALQ_89865875", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01694.WXS.Tpb C3L-01694 AML WXS tumor_peripheral_blood CPT0340290002 CPT0340290002.WholeExome.RP-1303.bam 31286388274 BAM submitted_aligned CPTAC3 c56f92f5-a1de-4bd8-a3f6-eeb898485791 38835ff793931fea3c5bbf45665ab71a {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-01694.WXS.Tpb.hg38 C3L-01694 AML WXS tumor_peripheral_blood CPT0340290002 6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wxs_gdc_realn.bam 43163559785 BAM harmonized CPTAC3 236a0476-77cc-4842-b611-7d8ae76256db d0e980372f3d5e9506b37d35126e5a6b {"aliquot_tag": "ALQ_bd6cfa4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-01696.MethArray.Green.Tbm C3L-01696 AML Methylation_Array tumor_bone_marrow CPT0166290002 203561620054_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 090922bd-5325-4c89-9a7c-3b5fac7b9ca9 93eeadd0c007c600927a318eeb2d19ec {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.MethArray.Red.Tbm C3L-01696 AML Methylation_Array tumor_bone_marrow CPT0166290002 203561620054_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 409f54a9-1c4c-4fb5-b1d1-923d91aa7a6a a71dc0d86bd67b27f4a4f400b7bf34dc {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.miRNA-Seq.S24_L002_R1.Tbm C3L-01696 AML miRNA-Seq tumor_bone_marrow CPT0166320002 190508_UNC31-K00269_0215_BH7FYKBBXY_GGTAGC_S24_L002_R1_001.unaln.bam 145264302 BAM S24_L002_R1 submitted_unaligned CPTAC3 c16d36d4-f969-441d-b156-abe0c1479113 bd20c2533cc6389772efecc1a214f1f3 {"aliquot_tag": "ALQ_b85937d1", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.miRNA-Seq.Tbm.hg38 C3L-01696 AML miRNA-Seq tumor_bone_marrow CPT0166320002 a4cc8781-7dc6-44ba-b92e-cc5b45c46036_mirnaseq_gdc_realn.bam 159904342 BAM harmonized CPTAC3 2c8a855a-94b5-462d-846a-fa90dbe4478b b36ee77505072204afbe8a7d1a6a8903 {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.RNA-Seq.chimeric.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.chimeric.gdc_realn.bam 32661277 BAM chimeric harmonized CPTAC3 c15dd4fe-c5f2-48a8-b116-cf1a0e10d00c df30cdd26d0d4382845983dd185fc9fd {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.RNA-Seq.genomic.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.genomic.gdc_realn.bam 8651452145 BAM genomic harmonized CPTAC3 53abe101-df2d-4ec6-8b55-8a6ded923d48 b44588024015e5e4d5eb3be601e7cae6 {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.RNA-Seq.S42_L007_R1.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R1_001.fastq.gz 4068452902 FASTQ S42_L007_R1 submitted_unaligned CPTAC3 96152e05-9a90-41d0-8aad-96fcd8a9abad 769e93bf91b3afcf3bf9e09dfc33e139 {"aliquot_tag": "ALQ_b85937d1", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.RNA-Seq.S42_L007_R2.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R2_001.fastq.gz 4695883551 FASTQ S42_L007_R2 submitted_unaligned CPTAC3 52f743ca-17e2-4e87-8e66-69f9224c4139 a69be6ef52b83a21f5f9b8c793d176a6 {"aliquot_tag": "ALQ_b85937d1", "sample": "S42", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.RNA-Seq.transcriptome.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.transcriptome.gdc_realn.bam 10137569179 BAM transcriptome harmonized CPTAC3 38d0ace6-95fb-489a-9d93-eb5450ce6f7d ef53d104d6cbed36b7651e20bc6c0a7f {"aliquot_tag": "ALQ_b85937d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003_1 CPT0166350003_1.WholeGenome.RP-1303.bam 69838458599 BAM submitted_aligned CPTAC3 a4410206-057d-44ce-9819-37f992dfbdfb 7250d270ad5940fcedf44e80eac90df6 {"aliquot_tag": "ALQ_c9dfeeef", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003 CPT0166350003.WholeGenome.RP-1303.bam 21981937874 BAM submitted_aligned CPTAC3 de97474c-7074-43bd-a1f8-e98800f27ada dca8f62c04ec10e9985a6ef1fe3cc710 {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01696.WGS.Nbc.hg38 C3L-01696 AML WGS buccal_normal CPT0166350003_1 062dc65b-0cfc-4f1d-b5f4-64bff4bbc805_wgs_gdc_realn.bam 101206605126 BAM harmonized CPTAC3 75f30131-c76d-41f4-aeca-63d39aa3215b 0479455432fb8e7bec43c5651e775fa3 {"aliquot_tag": "ALQ_c9dfeeef", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-01696.WGS.Nbc.hg38 C3L-01696 AML WGS buccal_normal CPT0166350003 a1ab108e-f673-4cce-862e-77fa87d4a4f5_wgs_gdc_realn.bam 30140254960 BAM harmonized CPTAC3 19666272-672e-45f8-98e1-10baefb2e231 80ff1d5bae4c11a6f21909f953dfded1 {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01696.WGS.Tbm C3L-01696 AML WGS tumor_bone_marrow CPT0166290002 CPT0166290002.WholeGenome.RP-1303.bam 84446246342 BAM submitted_aligned CPTAC3 7c30eb6a-4f4c-40fa-8565-27f50456a49c c9e6d9ca88f0cf06605b35a2e5cf0b05 {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.WGS.Tbm.hg38 C3L-01696 AML WGS tumor_bone_marrow CPT0166290002 eeae1365-1d8d-4397-b2ba-bf7aae4883ae_wgs_gdc_realn.bam 123011651132 BAM harmonized CPTAC3 30772786-a9c8-40f0-b5c8-1853d6bd440b 86dd95f30662cdf418e4e48bf27fbf5a {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.WXS.Nbc C3L-01696 AML WXS buccal_normal CPT0166350003 CPT0166350003.WholeExome.RP-1303.bam 21981937940 BAM submitted_aligned CPTAC3 8faf9d47-a91d-42ec-835f-d32440ce8abd 7823453d1082dd3ae3d5cf43a587aca5 {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01696.WXS.Nbc.hg38 C3L-01696 AML WXS buccal_normal CPT0166350003 a1ab108e-f673-4cce-862e-77fa87d4a4f5_wxs_gdc_realn.bam 30206011598 BAM harmonized CPTAC3 291df1e9-343e-40f1-8819-22284ab7b9ab a1ab573aac1c9c4fe7359c010956514b {"aliquot_tag": "ALQ_7d7edb57", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01696.WXS.Tbm C3L-01696 AML WXS tumor_bone_marrow CPT0166290002 CPT0166290002.WholeExome.RP-1303.bam 25455818959 BAM submitted_aligned CPTAC3 313ee02e-41af-44b9-9d1a-59f4a81af55f 8c5d437e116af81a3abb5d4d330c54f0 {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01696.WXS.Tbm.hg38 C3L-01696 AML WXS tumor_bone_marrow CPT0166290002 eeae1365-1d8d-4397-b2ba-bf7aae4883ae_wxs_gdc_realn.bam 34893541717 BAM harmonized CPTAC3 fdcb0e80-77b9-452e-8101-0cbf5ae73ca6 a2effead85d1cd3d361982a1a3dc4414 {"aliquot_tag": "ALQ_4d5d565", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.MethArray.Green.Tbm C3L-01700 AML Methylation_Array tumor_bone_marrow CPT0200690002 203561450106_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 27044b14-54c1-42cf-973c-9f332b585614 7ced8590abbff8c33d8331f21823d1c4 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.MethArray.Red.Tbm C3L-01700 AML Methylation_Array tumor_bone_marrow CPT0200690002 203561450106_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 f6eec611-fdfb-4b26-a30c-13ec6db7ebb2 119ba3868fb765f144df6bc353322902 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.miRNA-Seq.S27_L002_R1.Tbm C3L-01700 AML miRNA-Seq tumor_bone_marrow CPT0200700002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATTCCT_S27_L002_R1_001.unaln.bam 229207078 BAM S27_L002_R1 submitted_unaligned CPTAC3 134d1fa9-4d15-45fa-9bf2-eb795f83e933 786a1a82a5a53b8d41686befbd638c4a {"aliquot_tag": "ALQ_c53a26df", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.miRNA-Seq.Tbm.hg38 C3L-01700 AML miRNA-Seq tumor_bone_marrow CPT0200700002 665d766e-2604-4434-b02f-d8895d315e53_mirnaseq_gdc_realn.bam 252873972 BAM harmonized CPTAC3 796254fa-8bbd-4214-a151-62dc2acb24ef 524aca3a29cc829ec944a5fcb65771aa {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.RNA-Seq.chimeric.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.chimeric.gdc_realn.bam 31799306 BAM chimeric harmonized CPTAC3 25c2a4b6-2d3f-47cc-86a7-4c047a428774 50ab8e5039334a4d99e4431c0f5915c9 {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.RNA-Seq.genomic.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.genomic.gdc_realn.bam 7755034841 BAM genomic harmonized CPTAC3 9a2d45b9-e371-4407-8b31-63c684b65cd4 84a8580d8b265ce715928ba3c89525c7 {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.RNA-Seq.S21_L006_R1.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R1_001.fastq.gz 3805045729 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 f456c6d9-3147-4e10-ad0a-c4125bc6a38b abfe9184fb20c422610fa0ec7f60d632 {"aliquot_tag": "ALQ_c53a26df", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.RNA-Seq.S21_L006_R2.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R2_001.fastq.gz 4349536713 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 80547ec7-4f9f-45e6-baa4-36be1dbd9965 c41cb44d081fbb446aab8e25c74bba45 {"aliquot_tag": "ALQ_c53a26df", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.RNA-Seq.transcriptome.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.transcriptome.gdc_realn.bam 9106457661 BAM transcriptome harmonized CPTAC3 77c631d1-8a00-4b06-aad6-e8569f69ff14 0763389605c76e0975b55dc47ef174c6 {"aliquot_tag": "ALQ_c53a26df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.WGS.Nbc C3L-01700 AML WGS buccal_normal CPT0200790002 CPT0200790002.WholeGenome.RP-1303.bam 80790915888 BAM submitted_aligned CPTAC3 2612ec86-28e4-4395-ae9d-39a5c2a3af4c d656e4ceb20bc268d367593638d864ff {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01700.WGS.Nbc.hg38 C3L-01700 AML WGS buccal_normal CPT0200790002 7516f386-c88b-4bb7-8387-3973bf607a6b_wgs_gdc_realn.bam 117965029474 BAM harmonized CPTAC3 c9ca3855-56ab-43b4-94ba-b9be6a3bba97 d2953f95329a9d4392ee6da729b98eb8 {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01700.WGS.Tbm C3L-01700 AML WGS tumor_bone_marrow CPT0200690002 CPT0200690002.WholeGenome.RP-1303.bam 60445639298 BAM submitted_aligned CPTAC3 1955550f-7238-4c76-ae95-4d55ccbeeaaa 9767b4f424f6ade993cb458f1ef30357 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.WGS.Tbm.hg38 C3L-01700 AML WGS tumor_bone_marrow CPT0200690002 033d0e2c-f775-4175-af88-e5ee38b6f78d_wgs_gdc_realn.bam 87131472032 BAM harmonized CPTAC3 b0dc159d-ba72-46f7-a292-b64202b41de3 74623237c4d108edf1da4b8f288befa3 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.WXS.Nbc C3L-01700 AML WXS buccal_normal CPT0200790002 CPT0200790002.WholeExome.RP-1303.bam 26154482324 BAM submitted_aligned CPTAC3 8fdc46cf-d09a-4f44-b1c6-070aca873442 78ae31b04db4a727a18d39477106e4cb {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01700.WXS.Nbc.hg38 C3L-01700 AML WXS buccal_normal CPT0200790002 7516f386-c88b-4bb7-8387-3973bf607a6b_wxs_gdc_realn.bam 36212867962 BAM harmonized CPTAC3 676720f7-87ab-4d27-b690-8f1cb45a3553 afdd5e21c53151158bdc27d2c9a888ef {"aliquot_tag": "ALQ_c82a44ae", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-01700.WXS.Tbm C3L-01700 AML WXS tumor_bone_marrow CPT0200690002 CPT0200690002.WholeExome.RP-1303.bam 26681592219 BAM submitted_aligned CPTAC3 a2706344-3c5a-4879-897c-c32c49e7ccdc 4d47f41b6bc01a2656ae1536084c84d9 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01700.WXS.Tbm.hg38 C3L-01700 AML WXS tumor_bone_marrow CPT0200690002 033d0e2c-f775-4175-af88-e5ee38b6f78d_wxs_gdc_realn.bam 37431702287 BAM harmonized CPTAC3 373bc943-3146-4c77-920e-ce7624d3eb57 5639417bf248ba887c4e3d09bd29d595 {"aliquot_tag": "ALQ_376970b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-01702.ADD_412fa909.MethArray.Green.T C3L-01702 PDA Methylation_Array tumor CPT0094830010 202234380050_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 438bc4df-f421-4585-9a47-b5cee9667812 40e25dc510c47f3a5334f50798c98044 {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.ADD_412fa909.MethArray.Red.T C3L-01702 PDA Methylation_Array tumor CPT0094830010 202234380050_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 bd493cff-cbf2-48e4-865b-07287c6dab44 609fd297afae6407598ad5a9799e402f {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.ADD_412fa909.WGS.T C3L-01702 PDA WGS tumor CPT0094830010 CPT0094830010.WholeGenome.RP-1303.bam 58687941397 BAM submitted_aligned CPTAC3 a602cf67-ca06-48a6-8338-30ee4d1d77b4 4b055203fddf86aa982d869c6cebddf7 {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.ADD_412fa909.WGS.T.hg38 C3L-01702 PDA WGS tumor CPT0094830010 55cb86b0-a9bf-4ebe-a6e1-4980151e80cf_wgs_gdc_realn.bam 87944993380 BAM harmonized CPTAC3 07e5550b-cc74-4209-a752-5ca156d2362a 5ce8012f60ebeed2c60a150b07a29a9b {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.ADD_412fa909.WXS.T C3L-01702 PDA WXS tumor CPT0094830010 CPT0094830010.WholeExome.RP-1303.bam 29146374479 BAM submitted_aligned CPTAC3 44ee9592-592d-41d3-87b7-4b1ed91b0ba4 ec00986e72bcbb460f8b4a0a58e41e69 {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.ADD_412fa909.WXS.T.hg38 C3L-01702 PDA WXS tumor CPT0094830010 55cb86b0-a9bf-4ebe-a6e1-4980151e80cf_wxs_gdc_realn.bam 39992771737 BAM harmonized CPTAC3 72ae9b49-9baa-4db9-a3be-46eebb8e3589 fb452736937f3b109c7137b6899dc5af {"aliquot_tag": "ADD_412fa909", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.miRNA-Seq.S9_L006_R1.T C3L-01702 PDA miRNA-Seq tumor CPT0094830007 180828_UNC32-K00270_0112_AHWTLNBBXX_GTAGAG_S9_L006_R1_001.unaln.bam 284932613 BAM S9_L006_R1 submitted_unaligned CPTAC3 f074102a-9da6-4f33-b66e-f8649ab346ce ff50a265da27e73f5175a9e10f7fc64a {"aliquot_tag": "ALQ_c6500deb", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.miRNA-Seq.T.hg38 C3L-01702 PDA miRNA-Seq tumor CPT0094830007 1353f095-3b61-4410-a77f-43f4b366bc82_mirnaseq_gdc_realn.bam 311898874 BAM harmonized CPTAC3 77c2bae3-6a6c-455f-8c9e-f26b0b8a8ab5 48bd491445ad0f17eb4b60c3920d34b2 {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.RNA-Seq.chimeric.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.chimeric.gdc_realn.bam 114389081 BAM chimeric harmonized CPTAC3 66d1cb7a-5f92-4e45-83ae-20f0bf2c6ca8 295233efc141bf685ce7338b579f3287 {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.RNA-Seq.genomic.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.genomic.gdc_realn.bam 9542431073 BAM genomic harmonized CPTAC3 cff79f85-0bdc-4a14-886d-b0f3b48156a6 8174110d2f130d943e0d4cd0b8a2bf45 {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.RNA-Seq.S22_L006_R1.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R1_001.fastq.gz 4259382174 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 a8bbcd02-1dbd-4841-9abf-147a007025ab 257f300b83231fe9b1f75ec0d8aa9bd7 {"aliquot_tag": "ALQ_c6500deb", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.RNA-Seq.S22_L006_R2.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R2_001.fastq.gz 4636593997 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 2a6ed8fb-e80c-497b-aa15-fff187d6e3a7 bf8c20e6a4b4a5a52665fb86b7980b0d {"aliquot_tag": "ALQ_c6500deb", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.RNA-Seq.transcriptome.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.transcriptome.gdc_realn.bam 10224696208 BAM transcriptome harmonized CPTAC3 7ac0abb1-d731-42f9-a6f8-337ca8a75ce0 2f2bfa21582175b3b77f50e7f856a06f {"aliquot_tag": "ALQ_c6500deb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.Targeted.T C3L-01702 PDA Targeted_Sequencing tumor CPT0094830010_1 CPT0094830010_1.CustomSelection.RP-1303.PDO-18786.bam 5580823428 BAM submitted_aligned CPTAC3 1be815f0-15eb-414a-adcf-81aaed2aa4cf f667b424e85b355fecb907b88526ce20 {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.Targeted.T.hg38 C3L-01702 PDA Targeted_Sequencing tumor CPT0094830010_1 76607a42-17bf-4fe3-b086-c68c0b5f857b_targetedsequencing_gdc_realn.bam 7641156919 BAM harmonized CPTAC3 62f9f32d-fbdb-4d3c-8dce-77d92ac76b7e 9150a76b1755729ab3265178bc6d4469 {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.WGS.N C3L-01702 PDA WGS blood_normal CPT0094880007 CPT0094880007.WholeGenome.RP-1303.bam 66603108727 BAM submitted_aligned CPTAC3 0a8e9af3-adc6-478f-bc4b-4398e6ad20fb 123e112a505af678905f81b6f2f73504 {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01702.WGS.N.hg38 C3L-01702 PDA WGS blood_normal CPT0094880007 bd447a9a-1de1-4b99-83b1-bc021ce634f8_wgs_gdc_realn.bam 98616070203 BAM harmonized CPTAC3 f10fc8b4-5c83-4b4a-a27c-4f42bb53aff5 e419f9c997c7fc2cbf3d4631537073a9 {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01702.WXS.N C3L-01702 PDA WXS blood_normal CPT0094880007 CPT0094880007.WholeExome.RP-1303.bam 35445807566 BAM submitted_aligned CPTAC3 12468c4b-d9ce-4d7b-a291-49628aaf34e4 eebbb203b9b82fa7867829ce9991d4ea {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01702.WXS.N.hg38 C3L-01702 PDA WXS blood_normal CPT0094880007 bd447a9a-1de1-4b99-83b1-bc021ce634f8_wxs_gdc_realn.bam 49848189087 BAM harmonized CPTAC3 60696094-cd7b-40cf-9e6d-d51915c7a511 c0c776af9f146669ffa4b939f87ba52a {"aliquot_tag": "ALQ_b1803cfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01702.WXS.T C3L-01702 PDA WXS tumor CPT0094830010_1 CPT0094830010_1.WholeExome.RP-1303.bam 54828665281 BAM submitted_aligned CPTAC3 477cb053-f14e-4957-85c4-9029aa12e15a e7ab5296f7ce22a87483e2f6670ef93c {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01702.WXS.T.hg38 C3L-01702 PDA WXS tumor CPT0094830010_1 76607a42-17bf-4fe3-b086-c68c0b5f857b_wxs_gdc_realn.bam 74973388821 BAM harmonized CPTAC3 6a4fd777-cb3b-4fc1-9eb0-3e65847a51f9 3e0178881d6382bea22a28e27dde1582 {"aliquot_tag": "ALQ_53ecb274", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01703.ADD_3853a6bc.MethArray.Green.T C3L-01703 PDA Methylation_Array tumor CPT0094940010 202234380064_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 714472e8-9bfe-4fe9-bed3-21e1a5715cbe 145d08ad4ce0bd56b6758865c4af47a7 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.ADD_3853a6bc.MethArray.Red.T C3L-01703 PDA Methylation_Array tumor CPT0094940010 202234380064_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6b86d69c-78a1-4f81-9f5c-bd4f709b74c2 0ad8053a266b06764e611fffffef2d96 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.ADD_3853a6bc.WGS.T C3L-01703 PDA WGS tumor CPT0094940010 CPT0094940010.WholeGenome.RP-1303.bam 63236078790 BAM submitted_aligned CPTAC3 1c6c1eac-4121-4b8f-a3c3-ed1ed2894bfb 5b9c11cb417cd04464f141846f63ed44 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.ADD_3853a6bc.WGS.T.hg38 C3L-01703 PDA WGS tumor CPT0094940010 22e84ec7-9a85-4e63-9eb2-93c3df982d12_wgs_gdc_realn.bam 93446960059 BAM harmonized CPTAC3 e4b8c2ab-d38f-4be2-b18b-f49825caa583 92906f7ff2c8101ff39a67ae07f4400d {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.ADD_3853a6bc.WXS.T C3L-01703 PDA WXS tumor CPT0094940010 CPT0094940010.WholeExome.RP-1303.bam 39561107744 BAM submitted_aligned CPTAC3 72386d2d-a0a6-425b-adf2-685b36e513c0 0b2846784642c667c46ed27b5a673d5b {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.ADD_3853a6bc.WXS.T.hg38 C3L-01703 PDA WXS tumor CPT0094940010 22e84ec7-9a85-4e63-9eb2-93c3df982d12_wxs_gdc_realn.bam 54828452093 BAM harmonized CPTAC3 b6c9c622-0812-4e42-8935-59c9d8f6d127 fbf6ca882de3c35d62e43ab9ebcbc876 {"aliquot_tag": "ADD_3853a6bc", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.MethArray.Green.A C3L-01703 PDA Methylation_Array tissue_normal CPT0094960010 203561450023_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f38ae311-48b0-44a7-8169-9884a6658642 98586614749abf7edcf3193d697fb84f {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.MethArray.Red.A C3L-01703 PDA Methylation_Array tissue_normal CPT0094960010 203561450023_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 3fd23c44-da6f-47f4-a499-0d8cdd15fc99 91339c86e8175f208d771ae8ecc744ea {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.miRNA-Seq.A.hg38 C3L-01703 PDA miRNA-Seq tissue_normal CPT0094960008 87a356a4-beb8-4f93-baee-d84614c8416a_mirnaseq_gdc_realn.bam 275503606 BAM harmonized CPTAC3 2b4d7f10-2222-45c1-bf14-8064c2518c0a 50cb66e33451e19310cf68f8d5d9b889 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.miRNA-Seq.S10_L006_R1.T C3L-01703 PDA miRNA-Seq tumor CPT0094940007 180828_UNC32-K00270_0112_AHWTLNBBXX_GTCCGC_S10_L006_R1_001.unaln.bam 252951231 BAM S10_L006_R1 submitted_unaligned CPTAC3 b41bc34e-54fa-4cd5-8441-cf3b3e435207 57d9194b7ad7fb0d6f643a979c7dac49 {"aliquot_tag": "ALQ_bf2c025e", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.miRNA-Seq.S12_L001_R1.A C3L-01703 PDA miRNA-Seq tissue_normal CPT0094960008 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L001_R1_001.unaln.bam 245669243 BAM S12_L001_R1 submitted_unaligned CPTAC3 6ad9c5c3-d9e8-4d87-93fd-17970e8bd8c8 284ada4734f65e116e6823808135c07a {"aliquot_tag": "ALQ_55534caf", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.miRNA-Seq.T.hg38 C3L-01703 PDA miRNA-Seq tumor CPT0094940007 759c4173-56fc-4b7f-b390-9e1e3bef9bac_mirnaseq_gdc_realn.bam 284109858 BAM harmonized CPTAC3 7d697178-c538-4198-8df0-5a10262a5ca6 782762999f57cb9f28c696d254733a70 {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.RNA-Seq.chimeric.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.chimeric.gdc_realn.bam 159451161 BAM chimeric harmonized CPTAC3 2c8f346b-e1a9-40b5-a9d6-d39620b4c087 4897599effd3aac89f23755033c5a510 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.RNA-Seq.chimeric.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.chimeric.gdc_realn.bam 43518699 BAM chimeric harmonized CPTAC3 7ee463b4-d71b-4f05-a883-335cb02ffa89 e9171fd359886ad568a51b3115a1caea {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.RNA-Seq.genomic.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.genomic.gdc_realn.bam 8063932648 BAM genomic harmonized CPTAC3 499310fd-4883-4546-9233-d357c8a6fcc2 8acc823938075a45340e5b898c09ebe5 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.RNA-Seq.genomic.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.genomic.gdc_realn.bam 9166205172 BAM genomic harmonized CPTAC3 9e585e5e-33f4-4c83-aff5-cc45b6250bc3 c8438503dbeb684057b8edfa3aa93320 {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.RNA-Seq.S21_L006_R1.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R1_001.fastq.gz 3842278146 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 007cdbeb-bf0e-4fd4-9474-6946c1b1c757 69e8d6edd5a68f79325fbe5e3ce579af {"aliquot_tag": "ALQ_bf2c025e", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.RNA-Seq.S21_L006_R2.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R2_001.fastq.gz 3983446937 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 bc7fc91d-9d25-466f-9b13-3d875f3c0592 e2418050057230c1759525b1b5ca69b4 {"aliquot_tag": "ALQ_bf2c025e", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.RNA-Seq.S4_L006_R1.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R1_001.fastq.gz 3645287458 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 be348100-73f3-4d89-99f1-2776e58503ef 16b1a0aabb120cdaeb27cee49e2756d2 {"aliquot_tag": "ALQ_55534caf", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.RNA-Seq.S4_L006_R2.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4079220631 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 b7dd80aa-f652-4fad-a6de-425cebcd7616 e6aee5b5200dc63cc98f7f9cbadcb3f6 {"aliquot_tag": "ALQ_55534caf", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.RNA-Seq.transcriptome.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.transcriptome.gdc_realn.bam 9517166534 BAM transcriptome harmonized CPTAC3 50863830-af99-4048-97b8-219ec783969d f40046c49a33eff92ce3a12c6c03b4b8 {"aliquot_tag": "ALQ_55534caf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.RNA-Seq.transcriptome.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.transcriptome.gdc_realn.bam 10122856775 BAM transcriptome harmonized CPTAC3 4eb62ba1-7294-4596-b1ea-f05e73fb522b a08a05e76e0edf5ef81ceaaf03be797d {"aliquot_tag": "ALQ_bf2c025e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.Targeted.T C3L-01703 PDA Targeted_Sequencing tumor CPT0094940010_1 CPT0094940010_1.CustomSelection.RP-1303.PDO-18786.bam 4809621426 BAM submitted_aligned CPTAC3 7468a6f6-9521-4af0-8608-c32a74e0984f 380776795bbaef6d8839b6e2a35b560b {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.Targeted.T.hg38 C3L-01703 PDA Targeted_Sequencing tumor CPT0094940010_1 80f4521f-2a80-40db-a560-2a54130807f4_targetedsequencing_gdc_realn.bam 6824307186 BAM harmonized CPTAC3 04ce72ee-9cde-4769-925c-f4600a9851b5 9aca35dc743ebad441fbdb5ef08f0b80 {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.WGS.N C3L-01703 PDA WGS blood_normal CPT0094970002 CPT0094970002.WholeGenome.RP-1303.bam 66459083198 BAM submitted_aligned CPTAC3 05fe0bad-2316-4316-a574-c472ad54509a 45407d626a7e4410700a26cd442e7be3 {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01703.WGS.N.hg38 C3L-01703 PDA WGS blood_normal CPT0094970002 7c47a0a7-9a2f-4006-8f6a-3e28003ad4ba_wgs_gdc_realn.bam 96521300507 BAM harmonized CPTAC3 430334ce-61c4-44bd-86e4-30a9b853a35f 994e11bc666e4c3b31b873c1a475aa45 {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01703.WXS.A C3L-01703 PDA WXS tissue_normal CPT0094960010 CPT0094960010.WholeExome.RP-1303.bam 30385230653 BAM submitted_aligned CPTAC3 bf6703e9-667f-454d-aad3-98475ade9384 3a3fad650f9a6f647afa138138804cb8 {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.WXS.A.hg38 C3L-01703 PDA WXS tissue_normal CPT0094960010 2d4951d2-7c59-4a5b-80c3-7633bcc001ee_wxs_gdc_realn.bam 40587209626 BAM harmonized CPTAC3 3bffc900-69df-4e45-b830-8d9f7a197754 2fa931afff54f85f2b98275a0556b7e0 {"aliquot_tag": "ALQ_4293f5dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01703.WXS.N C3L-01703 PDA WXS blood_normal CPT0094970002 CPT0094970002.WholeExome.RP-1303.bam 43038313993 BAM submitted_aligned CPTAC3 f2819075-c3ae-4c80-b049-5502bc6ca5fb b846cb0bace37ad667bc4e93d73da07b {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01703.WXS.N.hg38 C3L-01703 PDA WXS blood_normal CPT0094970002 7c47a0a7-9a2f-4006-8f6a-3e28003ad4ba_wxs_gdc_realn.bam 59541678927 BAM harmonized CPTAC3 6569b796-8c93-48a0-8c44-44bf35568138 88bac0db3756afc86bf3bfc9cc5c53b4 {"aliquot_tag": "ALQ_88e68c01", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01703.WXS.T C3L-01703 PDA WXS tumor CPT0094940010_1 CPT0094940010_1.WholeExome.RP-1303.bam 64073774411 BAM submitted_aligned CPTAC3 aef819e4-e52e-4823-8a33-2e7425725a03 0c82c1ef61fc069c3d7644eb38450978 {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01703.WXS.T.hg38 C3L-01703 PDA WXS tumor CPT0094940010_1 80f4521f-2a80-40db-a560-2a54130807f4_wxs_gdc_realn.bam 87982640686 BAM harmonized CPTAC3 5c1ec140-50a7-49ee-9344-a08b57aa0ad5 b15dc15af7c04363f7fa64f1229c4c5d {"aliquot_tag": "ALQ_5ae18c64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01729.MethArray.Green.T C3L-01729 UCEC Methylation_Array tumor CPT0127610006 203219650157_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 df1d7fed-defc-4b3e-9fb5-f36758a13276 7e706f8e053dd93198c2cfe18c300b39 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.MethArray.Red.T C3L-01729 UCEC Methylation_Array tumor CPT0127610006 203219650157_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 57da63e9-15ac-44bd-aa02-6698acc66fc2 617931fbe729ae9bce59a69274c75a9a {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.miRNA-Seq.S34_L002_R1.T C3L-01729 UCEC miRNA-Seq tumor CPT0127610009 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 287627244 BAM S34_L002_R1 submitted_unaligned CPTAC3 08841f34-39ae-453f-8da5-4081186260ba 2eaf9fbdcf96058063da858998062610 {"aliquot_tag": "ALQ_1adb0074", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.miRNA-Seq.T.hg38 C3L-01729 UCEC miRNA-Seq tumor CPT0127610009 f631e862-5911-4a72-8e3d-9a396b5845ea_mirnaseq_gdc_realn.bam 322114732 BAM harmonized CPTAC3 311deff7-3564-43b3-8b81-18b95b24fa40 07e04376a5a84ff9b84c76a6d2e762fa {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.chimeric.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.chimeric.gdc_realn.bam 163417062 BAM chimeric harmonized CPTAC3 04013ab8-ebd6-4e57-b7fc-b7f6c6134297 67f7b514d2968b370fca6775fd561ad7 {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.chimeric.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.chimeric.gdc_realn.bam 244298549 BAM chimeric harmonized CPTAC3 0a4c9f05-4524-4283-a0e2-03895c60b6ad a559ea667bccf598b2ee947d8a76f571 {"aliquot_tag": "ALQ_6ec0db26", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.genomic.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.genomic.gdc_realn.bam 9807675667 BAM genomic harmonized CPTAC3 73648173-962b-4917-82b5-96674cb59322 080310ad375c0257af4a2e89accd62b4 {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.genomic.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.genomic.gdc_realn.bam 10712819572 BAM genomic harmonized CPTAC3 14563c82-25f2-4092-a235-0a17a1c06b6a 2553566039eeb378d123bde1b4a9e960 {"aliquot_tag": "ALQ_6ec0db26", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.S22_R1.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R1_001.fastq.gz 7123899589 FASTQ S22_R1 submitted_unaligned CPTAC3 11fd98bd-7fc6-4c55-b059-b82b7aa5d264 f77f6c3adb8213333012867556367539 {"aliquot_tag": "ALQ_6ec0db26", "sample": "S22", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.S22_R2.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R2_001.fastq.gz 7407847324 FASTQ S22_R2 submitted_unaligned CPTAC3 c54fd92c-25f8-49ec-b779-1b162bb2cf37 f3870e6f2342b3a11b6f6e47cbdded95 {"aliquot_tag": "ALQ_6ec0db26", "sample": "S22", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.S5_L002_R1.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R1_001.fastq.gz 4610458129 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 4604b126-1f14-4d78-8c65-2b2bdcfd1d3b ffdf9ac65ab11db58dd4cb6d1b7e24a2 {"aliquot_tag": "ALQ_1adb0074", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.S5_L002_R2.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R2_001.fastq.gz 4958931305 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 25f71782-2738-4f40-a72b-68b2b1520e64 59e85c8dca23e73a83a5e2221e273741 {"aliquot_tag": "ALQ_1adb0074", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.transcriptome.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.transcriptome.gdc_realn.bam 12529261231 BAM transcriptome harmonized CPTAC3 20fb1b07-6ce5-458c-9d02-a94a7e4d97b0 9e104e3df85524415161fcccbc31ca31 {"aliquot_tag": "ALQ_1adb0074", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.RNA-Seq.transcriptome.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.transcriptome.gdc_realn.bam 7433671458 BAM transcriptome harmonized CPTAC3 f1bfb3bf-c1d2-4bf1-9550-ead18b8eeb9e 524af9de239fe4abdf8c353a018761a0 {"aliquot_tag": "ALQ_6ec0db26", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.WGS.N C3L-01729 UCEC WGS blood_normal CPT0127680002 CPT0127680002.WholeGenome.RP-1303.bam 64426051726 BAM submitted_aligned CPTAC3 cc1cab01-5f68-48f1-ac83-d165ddb1f6fc cd07c3716e13c95d59b3c6703c9cfe08 {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01729.WGS.N.hg38 C3L-01729 UCEC WGS blood_normal CPT0127680002 7d95a659-ce2d-4ee3-a215-15999a007cc7_wgs_gdc_realn.bam 92867993921 BAM harmonized CPTAC3 0279c5ef-e231-4e28-b084-647b4c9eca0b 07f0ce3021d7f395cc92555b55cbe0b6 {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01729.WGS.T C3L-01729 UCEC WGS tumor CPT0127610006 CPT0127610006.WholeGenome.RP-1303.bam 65092057252 BAM submitted_aligned CPTAC3 ae7e6799-e503-41e7-b344-dfa95d819699 60d6782f2c6c9d08142309ee6ef87382 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.WGS.T.hg38 C3L-01729 UCEC WGS tumor CPT0127610006 ed31068d-d96f-4462-8e44-093998b8ec69_wgs_gdc_realn.bam 95091300301 BAM harmonized CPTAC3 ddf73173-ff17-4d73-96fa-ba7f34e63eca 76ce1331ed70356999b017c889e96d47 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.WXS.N C3L-01729 UCEC WXS blood_normal CPT0127680002 CPT0127680002.WholeExome.RP-1303.bam 35630084599 BAM submitted_aligned CPTAC3 ce7c1208-405d-48c4-95fd-6659226739cd 325399ebfecb46ec2650b37561c73e8e {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01729.WXS.N.hg38 C3L-01729 UCEC WXS blood_normal CPT0127680002 7d95a659-ce2d-4ee3-a215-15999a007cc7_wxs_gdc_realn.bam 47892515805 BAM harmonized CPTAC3 ddb1476d-74cf-4cea-a572-ea11374996b3 07d3f31f0c22265b9f2632ebfb81cf22 {"aliquot_tag": "ALQ_8019bb8d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01729.WXS.T C3L-01729 UCEC WXS tumor CPT0127610006 CPT0127610006.WholeExome.RP-1303.bam 21381192947 BAM submitted_aligned CPTAC3 23636be8-09de-44c4-a949-368ccb81b6b6 63dbed20a904b0cebc1241980c0ab437 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01729.WXS.T.hg38 C3L-01729 UCEC WXS tumor CPT0127610006 ed31068d-d96f-4462-8e44-093998b8ec69_wxs_gdc_realn.bam 28807695812 BAM harmonized CPTAC3 769e18cd-4e3c-4e63-a99a-2d2dd3dbc9b8 e501511fcaa1a826446f642640931026 {"aliquot_tag": "ALQ_8a641de5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.MethArray.Green.T C3L-01732 UCEC Methylation_Array tumor CPT0099910009 202234360025_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b4896c60-9995-47c9-9e7f-511f64f60dd3 a2246c94648bf289922eb64b3cdeaaec {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.MethArray.Red.T C3L-01732 UCEC Methylation_Array tumor CPT0099910009 202234360025_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 2b4dc5b4-ad8a-4450-807b-b2f017f148d0 eabc2cab47406ae15dfe3452bff6cff5 {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.miRNA-Seq.S11_L006_R1.T C3L-01732 UCEC miRNA-Seq tumor CPT0099910006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTGAAA_S11_L006_R1_001.unaln.bam 232386137 BAM S11_L006_R1 submitted_unaligned CPTAC3 9c7ad01c-9c11-48dc-be8e-1fc8f6dd6f85 c80d4b006fbea1e7828783d94a74d855 {"aliquot_tag": "ALQ_611cdc78", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.miRNA-Seq.T.hg38 C3L-01732 UCEC miRNA-Seq tumor CPT0099910006 fa39dc1c-7f56-4522-afff-862d568909eb_mirnaseq_gdc_realn.bam 255872199 BAM harmonized CPTAC3 1d8f2117-81bc-4f4e-8c66-52c21c865d1d eac00c3f6f126cc43589e653b4a5107b {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.chimeric.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.chimeric.gdc_realn.bam 124815586 BAM chimeric harmonized CPTAC3 4b8d5576-fec3-4471-8cd7-132c9f52ad16 cfd4812d3fb6703940ddeb9a04190c90 {"aliquot_tag": "ALQ_454d1bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.chimeric.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.chimeric.gdc_realn.bam 33438327 BAM chimeric harmonized CPTAC3 7484e710-0345-47c8-9085-adfbe50dfa5f aa404ba8493fcba83f38f43b6ce80bd0 {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.genomic.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.genomic.gdc_realn.bam 7257655565 BAM genomic harmonized CPTAC3 c4a8086c-03b3-42c5-a3fe-880bcf9b9774 4b691a24215cb7d7efff181a27124ee1 {"aliquot_tag": "ALQ_454d1bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.genomic.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.genomic.gdc_realn.bam 10254152483 BAM genomic harmonized CPTAC3 d2af1771-9a11-4140-ad02-7f72a3e91b63 31e3c46e2dc18e69334ac92a7ec65cf8 {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.S20_L006_R1.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R1_001.fastq.gz 4733741687 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 b1bc0d03-c4da-4cbf-83f0-9923e34453b7 66c535fd473dec04be7ad375624b9e83 {"aliquot_tag": "ALQ_611cdc78", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.S20_L006_R2.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R2_001.fastq.gz 5089579238 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 0f92fa3d-9fe1-47f1-8ceb-74db455e05c2 a87bb4871bbb50acc627b2ad75c76e23 {"aliquot_tag": "ALQ_611cdc78", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.S68_R1.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R1_001.fastq.gz 4648651866 FASTQ S68_R1 submitted_unaligned CPTAC3 f4b5e327-f0aa-40b5-9888-e4c9159558cf aad3affb0edd03bf5b3aaa8021309f48 {"aliquot_tag": "ALQ_454d1bf", "sample": "S68", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.S68_R2.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R2_001.fastq.gz 4795746454 FASTQ S68_R2 submitted_unaligned CPTAC3 852dd373-aefb-490e-9576-3ff9416b97be 4e2cf96d85655034faacbccbe4d29e46 {"aliquot_tag": "ALQ_454d1bf", "sample": "S68", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.transcriptome.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.transcriptome.gdc_realn.bam 5850951997 BAM transcriptome harmonized CPTAC3 ae5b151e-c2ff-4948-9495-deaafcb4f9f0 03ab77e919bcc194870588cfc41f1507 {"aliquot_tag": "ALQ_454d1bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.RNA-Seq.transcriptome.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.transcriptome.gdc_realn.bam 12240145051 BAM transcriptome harmonized CPTAC3 e49fd28f-86db-420f-a7d7-4409a0289437 6ed45525a66098763fe3a69d996644fa {"aliquot_tag": "ALQ_611cdc78", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.WGS.N C3L-01732 UCEC WGS blood_normal CPT0099960002 CPT0099960002.WholeGenome.RP-1303.bam 67425693923 BAM submitted_aligned CPTAC3 f46ec9fe-a543-4e29-979a-b2ecf67af771 9bd8247fa78748c0b805e180b897cb53 {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01732.WGS.N.hg38 C3L-01732 UCEC WGS blood_normal CPT0099960002 0722e4e7-531f-414f-9618-b845877762ad_wgs_gdc_realn.bam 97748914052 BAM harmonized CPTAC3 4df6151e-2e7b-485a-b75e-f8ddafeb1f57 ba83a970b0d9f832172c97ad60324a8c {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01732.WGS.T C3L-01732 UCEC WGS tumor CPT0099910009 CPT0099910009.WholeGenome.RP-1303.bam 55855023178 BAM submitted_aligned CPTAC3 061f73c9-9bb3-437b-a248-274d40400cbd 6e37d6c4d35462a7b37b073347f6ee2a {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.WGS.T.hg38 C3L-01732 UCEC WGS tumor CPT0099910009 c228864c-d4bb-4ab9-bf32-0c233cb7fc93_wgs_gdc_realn.bam 80671456253 BAM harmonized CPTAC3 332816b7-0a2d-4655-b650-cb7734827885 6412e536d0edaad2ac95d77ba88898d2 {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.WXS.N C3L-01732 UCEC WXS blood_normal CPT0099960002 CPT0099960002.WholeExome.RP-1303.bam 30842109459 BAM submitted_aligned CPTAC3 fff36643-e8ba-44b0-88c0-0c20d98b78db 91426ef54cb54ab6dd4eedca7fa89bee {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01732.WXS.N.hg38 C3L-01732 UCEC WXS blood_normal CPT0099960002 0722e4e7-531f-414f-9618-b845877762ad_wxs_gdc_realn.bam 41422060855 BAM harmonized CPTAC3 e5e3670b-8686-4b6b-b1b0-6fcb8449d564 58a901c0b3d5cbe6b18f2c313f682ed7 {"aliquot_tag": "ALQ_d451c471", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01732.WXS.T C3L-01732 UCEC WXS tumor CPT0099910009 CPT0099910009.WholeExome.RP-1303.bam 35096509600 BAM submitted_aligned CPTAC3 69f5db63-9fca-4c12-a9b9-138ee23b7654 624202c5697742d10ab3d680b3dfcd0d {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01732.WXS.T.hg38 C3L-01732 UCEC WXS tumor CPT0099910009 c228864c-d4bb-4ab9-bf32-0c233cb7fc93_wxs_gdc_realn.bam 47428526184 BAM harmonized CPTAC3 fa860b98-c244-49e9-bfaa-2db56979641d f530a563b2a0eaa9a7595e13390e1c52 {"aliquot_tag": "ALQ_f1a3c1e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.MethArray.Green.T C3L-01739 UCEC Methylation_Array tumor CPT0100100009 202234380050_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 79692d4b-70c0-404e-998b-c60dac49dc61 17a4900123c2b2c4eaac7bdb80d0a916 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.MethArray.Red.T C3L-01739 UCEC Methylation_Array tumor CPT0100100009 202234380050_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 87eacc2d-1bdf-456a-99bf-ca5e5d14524e 5c0a43cb433870e5bdc136b71247c179 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.miRNA-Seq.S12_L006_R1.T C3L-01739 UCEC miRNA-Seq tumor CPT0100100006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTGGCC_S12_L006_R1_001.unaln.bam 201420446 BAM S12_L006_R1 submitted_unaligned CPTAC3 d8d2eafe-cf4a-44e5-9594-f30789b79c0a 4cda17bd4024bdcd937797803c70931e {"aliquot_tag": "ALQ_2d833d1e", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.miRNA-Seq.T.hg38 C3L-01739 UCEC miRNA-Seq tumor CPT0100100006 f507146e-3dba-4627-8d65-80f54fbbb79b_mirnaseq_gdc_realn.bam 222583307 BAM harmonized CPTAC3 c3696ff1-33c2-4772-80da-9ec2b061e852 7e27ede8047a60d781f2315557e7aa07 {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.chimeric.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.chimeric.gdc_realn.bam 278151028 BAM chimeric harmonized CPTAC3 e056af85-2fdb-41d1-8860-d7ed8456ef53 50e518799f5be108b2ee8d58540a8481 {"aliquot_tag": "ALQ_48cb30d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.chimeric.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.chimeric.gdc_realn.bam 37284080 BAM chimeric harmonized CPTAC3 eb249ccd-9dc5-426f-ac78-9f88c8f7cb36 f1cd4e0fd7424cd983ac9ce37d64da6d {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.genomic.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.genomic.gdc_realn.bam 11830628399 BAM genomic harmonized CPTAC3 f96a68f5-1458-444e-82f5-0f7f9a0f8bf8 ccd15340ec6b40aa815d7fe6474101ec {"aliquot_tag": "ALQ_48cb30d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.genomic.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.genomic.gdc_realn.bam 9557950272 BAM genomic harmonized CPTAC3 c81ba1ba-d541-467e-a7f3-b71d2ef4d603 5e1648f78f4cab7f1797c1b744296e77 {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.S23_L006_R1.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 4518577327 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 d95f57a9-4a63-4b0b-96cc-9648528d0bcf 6e1a33f929b683e4173797579034cbe7 {"aliquot_tag": "ALQ_2d833d1e", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.S23_L006_R2.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 4925058504 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 0dea6d6e-bb3f-4413-973c-e323be312921 7592dbdc60b6f127ea72b2fd693e6973 {"aliquot_tag": "ALQ_2d833d1e", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.S30_R1.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R1_001.fastq.gz 7193537019 FASTQ S30_R1 submitted_unaligned CPTAC3 dcefc962-c9a5-41d0-aa6b-bdf0d39268b5 b564ec71e7e5932d67c554670ce4fc2d {"aliquot_tag": "ALQ_48cb30d9", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.S30_R2.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R2_001.fastq.gz 7397365680 FASTQ S30_R2 submitted_unaligned CPTAC3 bf10e4b6-ff52-48c8-b16a-835a3cc3f5bd a90f37b28b50030c7b9088665bfc3506 {"aliquot_tag": "ALQ_48cb30d9", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.transcriptome.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.transcriptome.gdc_realn.bam 5826531711 BAM transcriptome harmonized CPTAC3 c6c68c75-e72b-46d5-9a4e-eb2b878f6589 2c3e9fcccc67f3e65252db2b4a48d320 {"aliquot_tag": "ALQ_48cb30d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.RNA-Seq.transcriptome.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.transcriptome.gdc_realn.bam 12324883320 BAM transcriptome harmonized CPTAC3 87d4bed9-03ad-4f3a-8b3a-333cd2250f22 7bf9eac8968e6b8da42907e6418779a8 {"aliquot_tag": "ALQ_2d833d1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.WGS.N C3L-01739 UCEC WGS blood_normal CPT0100140002 CPT0100140002.WholeGenome.RP-1303.bam 58244167790 BAM submitted_aligned CPTAC3 eac6c29e-4587-4f2a-ad3c-ba4eff1adc6d cb1d99b40e720b8f9c7d2f637a77ac11 {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01739.WGS.N.hg38 C3L-01739 UCEC WGS blood_normal CPT0100140002 34b6ff5e-3acd-4b44-a635-060ce8ef0f4a_wgs_gdc_realn.bam 85287636797 BAM harmonized CPTAC3 9a8754ae-98f3-4361-ab03-42c306872deb 771fb50895150cf0af4730068c61705c {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01739.WGS.T C3L-01739 UCEC WGS tumor CPT0100100009 CPT0100100009.WholeGenome.RP-1303.bam 65824019064 BAM submitted_aligned CPTAC3 d9c266f8-9989-40ce-807d-b944678c25f3 171a89872b1be76a739ce91024b7c583 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.WGS.T.hg38 C3L-01739 UCEC WGS tumor CPT0100100009 198a52d3-9a16-4843-a995-9c29e2007678_wgs_gdc_realn.bam 94404624833 BAM harmonized CPTAC3 4d2f9570-69e8-4c2c-ad1e-2697e637c682 e070066db09eee709c336042d80a1598 {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.WXS.N C3L-01739 UCEC WXS blood_normal CPT0100140002 CPT0100140002.WholeExome.RP-1303.bam 27560706196 BAM submitted_aligned CPTAC3 3f23eef4-7990-4e4b-9080-66bab31ba0a5 3ff47fb526fed3578fc799d3b03dec11 {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01739.WXS.N.hg38 C3L-01739 UCEC WXS blood_normal CPT0100140002 34b6ff5e-3acd-4b44-a635-060ce8ef0f4a_wxs_gdc_realn.bam 37027242763 BAM harmonized CPTAC3 b119fa15-ca77-42d1-89c8-6ee2cb72696f 25a4c1892cf49133ed1a819c65f7220c {"aliquot_tag": "ALQ_df6e5fc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01739.WXS.T C3L-01739 UCEC WXS tumor CPT0100100009 CPT0100100009.WholeExome.RP-1303.bam 36758203683 BAM submitted_aligned CPTAC3 2dd848ae-257b-44e7-ba25-dba20133a956 bfe243365f400d40c55365368e1df1fb {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01739.WXS.T.hg38 C3L-01739 UCEC WXS tumor CPT0100100009 198a52d3-9a16-4843-a995-9c29e2007678_wxs_gdc_realn.bam 50435269298 BAM harmonized CPTAC3 d8877efc-26df-42c7-b661-6008edf03ae4 5864fdaeadee25f918c599491e05088a {"aliquot_tag": "ALQ_bd3c208f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01744.MethArray.Green.T C3L-01744 UCEC Methylation_Array tumor CPT0093280009 202234370093_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 19a373d8-419c-4ce4-8d4b-662efd454251 3d83f7ae28ab2de6c17470b56cd0842d {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.MethArray.Red.T C3L-01744 UCEC Methylation_Array tumor CPT0093280009 202234370093_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 eda68eec-1496-4ae1-b4da-f61b5f0452d7 2f3fe696e40fa4a03335766be25850d3 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.miRNA-Seq.S22_L007_R1.T C3L-01744 UCEC miRNA-Seq tumor CPT0093280006 180724_UNC32-K00270_0106_BHWK3MBBXX_TCGAAG_S22_L007_R1_001.unaln.bam 175096830 BAM S22_L007_R1 submitted_unaligned CPTAC3 261cd912-f937-4cd4-a7df-1194e435bba4 18a418a2ba74a0533f025ebe90426c64 {"aliquot_tag": "ALQ_a2bb1184", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.miRNA-Seq.T.hg38 C3L-01744 UCEC miRNA-Seq tumor CPT0093280006 7a57a25f-1d9d-4823-9731-805c24799fc7_mirnaseq_gdc_realn.bam 190977432 BAM harmonized CPTAC3 deb6071c-b4de-4b20-aaa1-471649b6d866 19407bfb55816763457d4849dcb825e8 {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.chimeric.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.chimeric.gdc_realn.bam 290289941 BAM chimeric harmonized CPTAC3 6fca9b8e-2a92-4ef4-8d21-eda576a7012a 63464ffd8aea3a8a5dc75da892a62a9a {"aliquot_tag": "ALQ_83ef3a46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.chimeric.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.chimeric.gdc_realn.bam 73059443 BAM chimeric harmonized CPTAC3 4ee217a1-20e5-4e43-a622-a5f16ab3f60c 759067fe1e1f375d001537e1039d1a7e {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.genomic.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.genomic.gdc_realn.bam 11702739929 BAM genomic harmonized CPTAC3 3535d479-a02a-4c35-b932-dbe52cd7b66f 31868a502d8ba2b09913abf7c6d8032d {"aliquot_tag": "ALQ_83ef3a46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.genomic.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.genomic.gdc_realn.bam 12383061917 BAM genomic harmonized CPTAC3 fadf4b9e-ac98-4373-a816-de2b32bcb90d e2463b9afd2cb60f1258b54acb1a174b {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.S22_L006_R1.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R1_001.fastq.gz 5831041874 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 0eefe67a-b297-4c2f-87ad-d25b83e43a2b c340f987a8602c9626ef8e9dd8ae7ec8 {"aliquot_tag": "ALQ_a2bb1184", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.S22_L006_R2.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R2_001.fastq.gz 6144467611 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 6d97b258-2fc8-4b10-9c6c-d1e7dac46106 55488fc235fa581548202d6655ecdb15 {"aliquot_tag": "ALQ_a2bb1184", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.S53_R1.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R1_001.fastq.gz 6860518341 FASTQ S53_R1 submitted_unaligned CPTAC3 61ac0a53-a6a4-485b-b66b-5943ad25c674 baf73826b29853fb4170e8711575cb4d {"aliquot_tag": "ALQ_83ef3a46", "sample": "S53", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.S53_R2.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R2_001.fastq.gz 7051724252 FASTQ S53_R2 submitted_unaligned CPTAC3 1aa7308c-d11a-4363-b635-fe438693eadc f76e0ec43b5bd45755038cb8034c1861 {"aliquot_tag": "ALQ_83ef3a46", "sample": "S53", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.transcriptome.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.transcriptome.gdc_realn.bam 4802412909 BAM transcriptome harmonized CPTAC3 7c73e7db-9ebc-4800-b54e-f26b3e9087e5 0aa3b3779ae2af9e56979055fde9a45a {"aliquot_tag": "ALQ_83ef3a46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.RNA-Seq.transcriptome.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.transcriptome.gdc_realn.bam 15402670786 BAM transcriptome harmonized CPTAC3 9baff2d1-700a-45a7-9d68-aa9a963d2fb1 9b02bca772886ffcdd1a1cd551477528 {"aliquot_tag": "ALQ_a2bb1184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.WGS.N C3L-01744 UCEC WGS blood_normal CPT0093320002 CPT0093320002.WholeGenome.RP-1303.bam 65328130664 BAM submitted_aligned CPTAC3 fad09c9a-b5aa-4676-839e-627828a404b8 b20edd1955d6238df934e74d7200efee {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01744.WGS.N.hg38 C3L-01744 UCEC WGS blood_normal CPT0093320002 e3b971ec-48d2-431f-ae8b-719525fa1716_wgs_gdc_realn.bam 95904828699 BAM harmonized CPTAC3 59d5779f-3b81-49d3-9e1e-c081765a3df5 3b466849292659da30c8d40d07625717 {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01744.WGS.T C3L-01744 UCEC WGS tumor CPT0093280009 CPT0093280009.WholeGenome.RP-1303.bam 68825917887 BAM submitted_aligned CPTAC3 8dfd6085-73aa-462e-a3a8-e9d28a0f53fb b2dd89ecf3e0ceeb9a6c4dedc713eddf {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.WGS.T.hg38 C3L-01744 UCEC WGS tumor CPT0093280009 f52882fc-8b4f-47c1-bd89-bf72d116b7e6_wgs_gdc_realn.bam 101248759017 BAM harmonized CPTAC3 551e9aca-4705-4f05-8d2a-8f2dbc11eff7 5d5d3543ac254a8e62d8f2c7ecae6840 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.WXS.N C3L-01744 UCEC WXS blood_normal CPT0093320002 CPT0093320002.WholeExome.RP-1303.bam 37071618175 BAM submitted_aligned CPTAC3 df7c3154-2716-4dde-90aa-3424cabac508 85e5fd2c7c41edd25f99a9d976d00de3 {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01744.WXS.N.hg38 C3L-01744 UCEC WXS blood_normal CPT0093320002 e3b971ec-48d2-431f-ae8b-719525fa1716_wxs_gdc_realn.bam 51619385397 BAM harmonized CPTAC3 8b2f6755-245b-40fc-907d-062a356a39f3 307e6e4570daf59ab42ed002145445fc {"aliquot_tag": "ALQ_243a1e99", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01744.WXS.T C3L-01744 UCEC WXS tumor CPT0093280009 CPT0093280009.WholeExome.RP-1303.bam 39779090097 BAM submitted_aligned CPTAC3 a977336f-32d5-4311-bfc0-16c88e46776a d0c3b90f63d6b42cb0a166f730e52335 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01744.WXS.T.hg38 C3L-01744 UCEC WXS tumor CPT0093280009 f52882fc-8b4f-47c1-bd89-bf72d116b7e6_wxs_gdc_realn.bam 53211653788 BAM harmonized CPTAC3 e3388e0d-3dd6-4fab-81e0-5fd54ced76b3 48f2e70407f90cd5bf99c438a4e725e7 {"aliquot_tag": "ALQ_32040c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01749.MethArray.Green.T C3L-01749 UCEC Methylation_Array tumor CPT0127700006 203027380028_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 248a55d1-df53-42a0-b042-bd42d384e194 e83da0b789307069a6a3953fe64ad2d6 {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.MethArray.Red.T C3L-01749 UCEC Methylation_Array tumor CPT0127700006 203027380028_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 04268f32-5039-4d79-a361-f8a088481d15 7960feeecd613a486ffe49ce56f4c89d {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.miRNA-Seq.S40_L002_R1.T C3L-01749 UCEC miRNA-Seq tumor CPT0127700009 181108_UNC31-K00269_0162_AH255GBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 210482874 BAM S40_L002_R1 submitted_unaligned CPTAC3 b66630ca-12fc-4bbd-9e5c-a920b11e851a 2ad76097701d21a09c8c0981d2035dbb {"aliquot_tag": "ALQ_ece7fa61", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.miRNA-Seq.T.hg38 C3L-01749 UCEC miRNA-Seq tumor CPT0127700009 d2bf54fc-f8ea-4337-af00-25596053eef7_mirnaseq_gdc_realn.bam 234113415 BAM harmonized CPTAC3 30afe505-277f-4b75-8e2e-027e3b999e75 f6516ae2475cf65654ef1fceb088d8b0 {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.chimeric.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.chimeric.gdc_realn.bam 100937072 BAM chimeric harmonized CPTAC3 e44f686f-b670-4200-b112-581b1a94b44c 82fe7c946e84c21e6e6be4295a07662b {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.chimeric.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.chimeric.gdc_realn.bam 171318692 BAM chimeric harmonized CPTAC3 7491d510-62ca-44e1-b243-23f84382fe65 92b00894852f71bebc265b58e2c7ebb2 {"aliquot_tag": "ALQ_98fc2133", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.genomic.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.genomic.gdc_realn.bam 8623158934 BAM genomic harmonized CPTAC3 1bb9defb-674a-465e-9b60-207349539ce4 82a7fc9da016196114cb88c7f84dc8b6 {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.genomic.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.genomic.gdc_realn.bam 7754384329 BAM genomic harmonized CPTAC3 8abef200-b6bd-4551-99c5-97e8864ccdaf 66f89e3f3082be04a89ed0ed6141014a {"aliquot_tag": "ALQ_98fc2133", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.S1_L001_R1.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R1_001.fastq.gz 3938416423 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 9dd3ea5a-a3bd-4434-9f0b-0d35cc305330 193ae2547b9384d86d8d21272240b153 {"aliquot_tag": "ALQ_ece7fa61", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.S1_L001_R2.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R2_001.fastq.gz 4035920408 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 f7d79deb-c383-4e3b-b841-893600b4cfe7 6eaf595d0e0ed3f2f06a7f9e7b72f157 {"aliquot_tag": "ALQ_ece7fa61", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.S85_R1.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R1_001.fastq.gz 4798529068 FASTQ S85_R1 submitted_unaligned CPTAC3 d465c70b-65d3-4567-b275-b6c0caaedca1 08ceb0ce73dcfc3024fa7093215b4e97 {"aliquot_tag": "ALQ_98fc2133", "sample": "S85", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.S85_R2.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R2_001.fastq.gz 4946296881 FASTQ S85_R2 submitted_unaligned CPTAC3 fcaf44bb-0f9f-42bb-8163-b547d44eef1c 22248d8c4281e87d7555509ee0a37ec7 {"aliquot_tag": "ALQ_98fc2133", "sample": "S85", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.transcriptome.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.transcriptome.gdc_realn.bam 9086829853 BAM transcriptome harmonized CPTAC3 bd1b7fd9-ff8e-463e-ba6d-6264e77a3449 efc54362e3c13cbb1eaeb89ea2101dd2 {"aliquot_tag": "ALQ_ece7fa61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.RNA-Seq.transcriptome.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.transcriptome.gdc_realn.bam 3946812640 BAM transcriptome harmonized CPTAC3 485b46ad-42c1-44ce-a7fd-316378a911f8 77b53fa06191c698e0f2e1de592371c1 {"aliquot_tag": "ALQ_98fc2133", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.WGS.N C3L-01749 UCEC WGS blood_normal CPT0127770002 CPT0127770002.WholeGenome.RP-1303.bam 59558409752 BAM submitted_aligned CPTAC3 d6747ee1-2d39-42b4-8fc6-5196110d9ae3 566453450f7af82f47e989bdc39024d4 {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01749.WGS.N.hg38 C3L-01749 UCEC WGS blood_normal CPT0127770002 048cef20-9b2d-4d4c-9662-0670ae87b014_wgs_gdc_realn.bam 84872635100 BAM harmonized CPTAC3 a8139c38-f0e8-4ff9-8243-81abd2d2d0e4 dcbf57794b12445bd7b319e2cc0ecc5a {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01749.WGS.T C3L-01749 UCEC WGS tumor CPT0127700006 CPT0127700006.WholeGenome.RP-1303.bam 64695334394 BAM submitted_aligned CPTAC3 7962d164-12f2-4a02-aac3-96ff165145ab 0528158e89919857e5089d4424040fe4 {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.WGS.T.hg38 C3L-01749 UCEC WGS tumor CPT0127700006 324ac6b5-8497-41d9-9c93-718e3af445df_wgs_gdc_realn.bam 94705051513 BAM harmonized CPTAC3 28696064-855a-4300-9824-4f5c562ea351 1f0af4b036bc4606af905f5638b5af65 {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.WXS.N C3L-01749 UCEC WXS blood_normal CPT0127770002 CPT0127770002.WholeExome.RP-1303.bam 45237761076 BAM submitted_aligned CPTAC3 b81d02d1-bf5c-4c64-9807-f6035ff339f7 304ccecfc60904e4de483f8974901099 {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01749.WXS.N.hg38 C3L-01749 UCEC WXS blood_normal CPT0127770002 048cef20-9b2d-4d4c-9662-0670ae87b014_wxs_gdc_realn.bam 61223798352 BAM harmonized CPTAC3 acc3c5e1-9eb7-4c26-85ee-225283fe228c 9c3d18b7c33fe539654e187361193588 {"aliquot_tag": "ALQ_c915fff9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01749.WXS.T C3L-01749 UCEC WXS tumor CPT0127700006 CPT0127700006.WholeExome.RP-1303.bam 22073915714 BAM submitted_aligned CPTAC3 88f9e224-6797-4b84-9bf1-73d5398d9705 1481cc244a955d6e6900163a8820bbda {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01749.WXS.T.hg38 C3L-01749 UCEC WXS tumor CPT0127700006 324ac6b5-8497-41d9-9c93-718e3af445df_wxs_gdc_realn.bam 30065806580 BAM harmonized CPTAC3 103f447d-e215-4736-948b-d0162689a878 b7e77f74a20cc04a6b98bde959393d4a {"aliquot_tag": "ALQ_7c58e7f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.MethArray.Green.T C3L-01833 UCEC Methylation_Array tumor CPT0100010009 202234380050_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8a0bfdad-e5cd-43bd-992c-0fd3aaaef501 b215ad50ee8f63ad4559411884532eee {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.MethArray.Red.T C3L-01833 UCEC Methylation_Array tumor CPT0100010009 202234380050_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 3929fc71-3a4a-4a1a-8c74-5bcde498eb37 81c4c02bed5ff59e3abf287c7b3598f7 {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.miRNA-Seq.S13_L006_R1.T C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTTTCG_S13_L006_R1_001.unaln.bam 146463421 BAM S13_L006_R1 submitted_unaligned CPTAC3 0cf0de75-cdd0-4928-b012-ca1f218966e8 b4efd5649c81e001ad30ea072db25aed {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.miRNA-Seq.S21_L007_R1.T C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L007_R1_001.unaln.bam 148613148 BAM S21_L007_R1 submitted_unaligned CPTAC3 347ad43c-a905-4559-8b83-f32b5e9a1bc4 df40b2401f1b6eabce22697d44b63342 {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.miRNA-Seq.T.hg38 C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 bcd4ffbb-6a17-428a-b2c4-98eda37c0113_mirnaseq_gdc_realn.bam 325294046 BAM harmonized CPTAC3 abde0a82-8dfb-4244-9706-39f4d14a34e0 35029d3918916ff8bda13a6316ae9456 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.chimeric.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.chimeric.gdc_realn.bam 274367645 BAM chimeric harmonized CPTAC3 e80c2008-3d88-4972-8d3d-132057991da9 9b5f4f11977f88acc05acfc8139c76fd {"aliquot_tag": "ALQ_cf08021a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.chimeric.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.chimeric.gdc_realn.bam 32824644 BAM chimeric harmonized CPTAC3 cebbd4c1-6a36-4739-a8c0-5454552c0271 00a55c6f09777a48dbf228fadcaf0742 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.genomic.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.genomic.gdc_realn.bam 11934785924 BAM genomic harmonized CPTAC3 986f83d4-3621-4608-9443-fbf89d84fd90 ad401d990257eede137455816242d35e {"aliquot_tag": "ALQ_cf08021a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.genomic.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.genomic.gdc_realn.bam 8648961019 BAM genomic harmonized CPTAC3 07452e69-4720-47ec-a06d-6cc69f1ab6e1 faad28f9f12d52921337ca4fe29b8337 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.S18_L005_R1.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R1_001.fastq.gz 3954979116 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 0707c2e3-fe4a-447e-88a1-7ebf9897403f 995ff954e0008799d5bc05782309af2b {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.S18_L005_R2.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R2_001.fastq.gz 4378439977 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 c1ac3838-34f1-4b28-ab69-c4c2a8b92594 88dc2c19a8619fe49d3c3b886735baa7 {"aliquot_tag": "ALQ_dbbfc70b", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.S6_R1.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R1_001.fastq.gz 7227952247 FASTQ S6_R1 submitted_unaligned CPTAC3 5bc8af46-2f1d-4e9f-96c1-31f1e0d584cb 70aa399ec00f6ac27ace2ab1b360a9b9 {"aliquot_tag": "ALQ_cf08021a", "sample": "S6", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.S6_R2.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R2_001.fastq.gz 7547116685 FASTQ S6_R2 submitted_unaligned CPTAC3 5382cf03-129b-4518-a0e8-62e8897f4013 1fdb05b96132c0f136ffc71a7a99ea38 {"aliquot_tag": "ALQ_cf08021a", "sample": "S6", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.transcriptome.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.transcriptome.gdc_realn.bam 8757240736 BAM transcriptome harmonized CPTAC3 72b5eefe-a827-4371-9a23-8346015d5e31 e2eba3be1088d073637138f9dbd50559 {"aliquot_tag": "ALQ_cf08021a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.RNA-Seq.transcriptome.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.transcriptome.gdc_realn.bam 8391566878 BAM transcriptome harmonized CPTAC3 c661091b-e011-40d1-b837-f72430d15bf8 1467f1a4e68ce2e49d67758e09d494c1 {"aliquot_tag": "ALQ_dbbfc70b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.WGS.N C3L-01833 UCEC WGS blood_normal CPT0100050002 CPT0100050002.WholeGenome.RP-1303.bam 65311854468 BAM submitted_aligned CPTAC3 8df5e346-ef96-4b0e-b33a-08b3a205a41e 54069c42f48ac41235dc809e99cdd0f2 {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01833.WGS.N.hg38 C3L-01833 UCEC WGS blood_normal CPT0100050002 82cd6dc4-3a55-4dda-bead-8ad25b691833_wgs_gdc_realn.bam 96105426093 BAM harmonized CPTAC3 5b726450-60f7-4028-8d82-fe1e6d026f4e 39d3ce83f15a11ea89d841854b30ed75 {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01833.WGS.T C3L-01833 UCEC WGS tumor CPT0100010009 CPT0100010009.WholeGenome.RP-1303.bam 57633770826 BAM submitted_aligned CPTAC3 e903fcf2-11c8-418e-963a-d0a0875efd72 6fdd59ad154b8c96eed54b5e142f887a {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.WGS.T.hg38 C3L-01833 UCEC WGS tumor CPT0100010009 e1bf75ae-709e-484b-b4d7-2d589861b32c_wgs_gdc_realn.bam 83963530671 BAM harmonized CPTAC3 8e6318bc-bb0f-41a9-8595-059ccfda8f71 06ee2e2296e456af1a3251e2c6872985 {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.WXS.N C3L-01833 UCEC WXS blood_normal CPT0100050002 CPT0100050002.WholeExome.RP-1303.bam 43229235900 BAM submitted_aligned CPTAC3 adc0ead7-9e1c-4188-ac0c-7fbaeb332a54 211d21908a31b4d8898a08be8ccc1778 {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01833.WXS.N.hg38 C3L-01833 UCEC WXS blood_normal CPT0100050002 82cd6dc4-3a55-4dda-bead-8ad25b691833_wxs_gdc_realn.bam 59479282409 BAM harmonized CPTAC3 ac95ef0d-244f-4321-b071-e9cc28f73bde 6a3e28368ca67035aacd50a34a04c76e {"aliquot_tag": "ALQ_2952a5d2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01833.WXS.T C3L-01833 UCEC WXS tumor CPT0100010009 CPT0100010009.WholeExome.RP-1303.bam 42621531080 BAM submitted_aligned CPTAC3 7b8b5412-c020-4abd-a1f1-99bb4faec5c7 9496331af01461ff265f5b8a253ced64 {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01833.WXS.T.hg38 C3L-01833 UCEC WXS tumor CPT0100010009 e1bf75ae-709e-484b-b4d7-2d589861b32c_wxs_gdc_realn.bam 57838495653 BAM harmonized CPTAC3 3b7748e1-6351-471b-aca7-0f34d5e5dbc6 f6ba992ecbf516ad7cecfa5de67a8aeb {"aliquot_tag": "ALQ_4b00da9a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01834.ADD_d5e0acb7.MethArray.Green.T C3L-01834 GBM Methylation_Array tumor CPT0104220010 203027390049_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 a72dcd64-cc36-494c-9e15-21061834ab9d 1736dee091a53c995f1ea0588109103b {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.ADD_d5e0acb7.MethArray.Red.T C3L-01834 GBM Methylation_Array tumor CPT0104220010 203027390049_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 b70aedb4-4609-4fd4-9088-7bb8fa2319e6 0fec5faba0e5b4cd2fdcc721181e14dc {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.ADD_d5e0acb7.WXS.T C3L-01834 GBM WXS tumor CPT0104220010 CPT0104220010.WholeExome.RP-1303.bam 22939639897 BAM submitted_aligned CPTAC3 bd78ec3d-c033-4257-b250-2b90eeea5bca 9173bbf5b04c6e1d72559c968f06ac08 {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.ADD_d5e0acb7.WXS.T.hg38 C3L-01834 GBM WXS tumor CPT0104220010 c0308317-bfca-4564-bc9a-9e31ec5b1336_wxs_gdc_realn.bam 31018736739 BAM harmonized CPTAC3 18d26f34-47b9-4b58-81da-48f777001d49 607ea328e3a892bd3a0217d691cf9e35 {"aliquot_tag": "ADD_d5e0acb7", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.miRNA-Seq.S26_L004_R1.T C3L-01834 GBM miRNA-Seq tumor CPT0104220005 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L004_R1_001.unaln.bam 284212433 BAM S26_L004_R1 submitted_unaligned CPTAC3 8fb02a71-c6db-4a66-b59b-d7003c8811bb 6b6b19fa0a38a3e0838f5eb9a2a3cfcd {"aliquot_tag": "ALQ_bc916979", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.miRNA-Seq.T.hg38 C3L-01834 GBM miRNA-Seq tumor CPT0104220005 64ad87dc-140c-4030-a5b6-eda1a9946f2f_mirnaseq_gdc_realn.bam 317703220 BAM harmonized CPTAC3 fda976ec-7f45-426b-9846-274b67db15e0 839e19cde7f656fd5523460555afb52f {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.RNA-Seq.chimeric.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.chimeric.gdc_realn.bam 107259703 BAM chimeric harmonized CPTAC3 98ffd472-6c70-461f-9998-b921d4107960 5fd75cc49d54c034c5ad146bb7195c61 {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.RNA-Seq.genomic.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.genomic.gdc_realn.bam 9284663508 BAM genomic harmonized CPTAC3 5aeb675f-28a9-48a9-bd27-3c503ab09fbd 3d64cd7f804b30e57b28c7a94f2289b3 {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.RNA-Seq.S6_L008_R1.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4205998241 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 bddce258-f479-4064-a83d-48bd5125aa0b 77e04d082814a887f1f71e4bad24219d {"aliquot_tag": "ALQ_bc916979", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.RNA-Seq.S6_L008_R2.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4708620005 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 0ee9ed9c-5178-49a5-b72c-b8ca17b7f496 1c9801c14c49eca03d9cf651e788f620 {"aliquot_tag": "ALQ_bc916979", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.RNA-Seq.transcriptome.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.transcriptome.gdc_realn.bam 10850312525 BAM transcriptome harmonized CPTAC3 5b689fcc-2597-4e00-a891-896d3a4782cd 692ff95dc98ce75ffa2447a368a079e0 {"aliquot_tag": "ALQ_bc916979", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01834.WGS.N C3L-01834 GBM WGS blood_normal CPT0105090002 CPT0105090002.WholeGenome.RP-1303.bam 58510830219 BAM submitted_aligned CPTAC3 f48150ec-f2a3-40a2-9d9b-52193cfb7574 3c0ea3caf8dcef90aadb5de8bafffbd1 {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01834.WGS.N.hg38 C3L-01834 GBM WGS blood_normal CPT0105090002 7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wgs_gdc_realn.bam 85614011228 BAM harmonized CPTAC3 758f901a-f6be-4f59-bc5d-50185c78a336 fd09145a1ed87d8e44b4d6334ab4a88c {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01834.WXS.N C3L-01834 GBM WXS blood_normal CPT0105090002 CPT0105090002.WholeExome.RP-1303.bam 34684127259 BAM submitted_aligned CPTAC3 9844e3be-cc8e-4838-91a7-c7792ae4970d 18fed23c3f06c32eaafd90dfcc8b47fc {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01834.WXS.N.hg38 C3L-01834 GBM WXS blood_normal CPT0105090002 7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wxs_gdc_realn.bam 47769398348 BAM harmonized CPTAC3 2ce1baf3-67b6-4de5-bb81-51f89abbf1c6 9081d6e991c74b4121072a467b279d89 {"aliquot_tag": "ALQ_be9a6774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01836.DUP_2282a3ba.miRNA-Seq.S10_L004_R1.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086860006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L004_R1_001.unaln.bam 219403427 BAM S10_L004_R1 submitted_unaligned CPTAC3 2d61528b-198d-4dac-8a54-a6d1e4716a81 4abe6fabe89e020a6a57b0db404e5769 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_2282a3ba.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086860006 865e1117-eb6f-48f0-960c-c540c4a83445_mirnaseq_gdc_realn.bam 246767334 BAM harmonized CPTAC3 308077ab-01a2-4b4d-899f-54d6c7ca644e 9f10b1adb864e5a4b68809067c305087 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_2282a3ba.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.chimeric.gdc_realn.bam 134205822 BAM chimeric harmonized CPTAC3 03add013-04e7-40ac-a1e5-caa00da4474a 623a33c5d8c65c5a7c19fb1d2fe348aa {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_2282a3ba.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.genomic.gdc_realn.bam 8451361187 BAM genomic harmonized CPTAC3 8a02f335-5824-4c70-a010-62b282d536a2 0c16b459c496d207d0d4e532cf466c34 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_2282a3ba.RNA-Seq.S19_L005_R1.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R1_001.fastq.gz 4097422514 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 768aa7e6-69e3-4feb-8b45-1c6858776a7d 9177f43c3205b114180a7fddc4cb4599 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_2282a3ba.RNA-Seq.S19_L005_R2.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R2_001.fastq.gz 4752243493 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 859c5418-0c86-4271-b106-c1baebf4cbb7 e4aebe9a4e8aed197423f9fce1fe1475 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_2282a3ba.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.transcriptome.gdc_realn.bam 12185116241 BAM transcriptome harmonized CPTAC3 15ac5439-95a2-420f-b2a2-edb66874843c 0b7b4de3e399beaf3f91df1f782a0d98 {"aliquot_tag": "DUP_2282a3ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_9db21ddb.miRNA-Seq.S11_L004_R1.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086880006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L004_R1_001.unaln.bam 291075684 BAM S11_L004_R1 submitted_unaligned CPTAC3 253cf67e-a8ac-4980-8f79-82b2e6774950 e7a49ca00ef4139c45581378431659f5 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_9db21ddb.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086880006 a3866871-2b4d-4e46-a658-3ff43ed80465_mirnaseq_gdc_realn.bam 327307751 BAM harmonized CPTAC3 5bda4365-d781-49bb-9d2d-b0e84848e3b2 154fee12fe0b7de4581267cb54844e84 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_9db21ddb.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.chimeric.gdc_realn.bam 119558976 BAM chimeric harmonized CPTAC3 82634c1f-66fb-4eb1-b98e-2d33af73389d 80653a3235d0d0b8762a29e0164af2e1 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_9db21ddb.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.genomic.gdc_realn.bam 8919727513 BAM genomic harmonized CPTAC3 400ae53f-c8ba-463c-8570-01369329b98b 1843b028d7caa6c5c2e44cf31b73f2e9 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_9db21ddb.RNA-Seq.S17_L005_R1.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R1_001.fastq.gz 4285952667 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 29ae1811-9252-44f8-aee8-7419a6f881f0 36543875e7c1859bdebe2ab624f9fb1b {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_9db21ddb.RNA-Seq.S17_L005_R2.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R2_001.fastq.gz 5055432049 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 17b69746-ad1c-4716-9bc4-ff423e8bbc65 f3911931c4097bdd20b234f1d816c2af {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_9db21ddb.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.transcriptome.gdc_realn.bam 12824461403 BAM transcriptome harmonized CPTAC3 01ec33e8-1758-48e0-a23c-8756a37c3dcd 10e89d3ccbad6e58712e2c7b7dd97a38 {"aliquot_tag": "DUP_9db21ddb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_b23dbe2b.MethArray.Green.T C3L-01836 CCRCC Methylation_Array tumor CPT0086860009 204372030074_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0ffe1538-3497-4520-93ca-12ac44151a15 d615c52d695266737cdeea8f9b103b04 {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_b23dbe2b.MethArray.Red.T C3L-01836 CCRCC Methylation_Array tumor CPT0086860009 204372030074_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 058b7baf-b6a8-4904-a13c-6f32d3cc9d7b 1027929d67ee4e34fed2d9e081579b26 {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_b23dbe2b.WGS.T C3L-01836 CCRCC WGS tumor CPT0086860009 CPT0086860009.WholeGenome.RP-2158.bam 21598653374 BAM submitted_aligned CPTAC3 a1363c44-5733-4673-b0a9-eeb950648173 94bdaea4a63da160fc0e29bd9ec0116e {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_b23dbe2b.WGS.T.hg38 C3L-01836 CCRCC WGS tumor CPT0086860009 54465230-bd1f-4cc6-a884-b66f9745bb61_wgs_gdc_realn.bam 62480126275 BAM harmonized CPTAC3 4c5e98e5-af52-4c77-b36c-f9180c2dfee9 e053c814ccaaf65edbe9f0dda1708454 {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_b23dbe2b.WXS.T C3L-01836 CCRCC WXS tumor CPT0086860009 CPT0086860009.WholeExome.RP-1303.bam 19200935637 BAM submitted_aligned CPTAC3 0ed67501-c064-48ef-a2db-ce415df7eaed 49f0f07ef90fad39182f9d7ac41e1b5f {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_b23dbe2b.WXS.T.hg38 C3L-01836 CCRCC WXS tumor CPT0086860009 54465230-bd1f-4cc6-a884-b66f9745bb61_wxs_gdc_realn.bam 26608149911 BAM harmonized CPTAC3 3b9fef0c-5740-4962-899d-981d61a33e98 2a92f9d544e1a39a7729a8b601739cfe {"aliquot_tag": "DUP_b23dbe2b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_d0d004a.MethArray.Green.T C3L-01836 CCRCC Methylation_Array tumor CPT0086880009 204367490090_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4b24c5f2-9ea4-4ecb-bfb2-aa0a597f1ef2 58a7a71180dceab351426fa8c460114a {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_d0d004a.MethArray.Red.T C3L-01836 CCRCC Methylation_Array tumor CPT0086880009 204367490090_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 400d51ff-1295-4a0a-b2df-1f1a0a975b9f c52a16d8ccb18c2653e6e03b08f3b63d {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_d0d004a.WGS.T C3L-01836 CCRCC WGS tumor CPT0086880009 CPT0086880009.WholeGenome.RP-2158.bam 26326595995 BAM submitted_aligned CPTAC3 705e1c3c-7f56-4433-b8b6-aac36844aaeb 7cd6ce78039d2452b92b46d94642b7ef {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_d0d004a.WGS.T.hg38 C3L-01836 CCRCC WGS tumor CPT0086880009 39647b55-0a9b-4c6b-83e3-6810740239ce_wgs_gdc_realn.bam 78187110312 BAM harmonized CPTAC3 e843476a-adf0-4879-8aa5-29ecd51f854d c41abe63cb721341e10bf2685fd68767 {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_d0d004a.WXS.T C3L-01836 CCRCC WXS tumor CPT0086880009 CPT0086880009.WholeExome.RP-1303.bam 23858097221 BAM submitted_aligned CPTAC3 841b31a6-3923-4a45-a5e2-a6d91ba61821 4422b4d78b97e88ca80a14d00fb1e247 {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.DUP_d0d004a.WXS.T.hg38 C3L-01836 CCRCC WXS tumor CPT0086880009 39647b55-0a9b-4c6b-83e3-6810740239ce_wxs_gdc_realn.bam 33298026502 BAM harmonized CPTAC3 f6e9e0d0-018f-4d1e-9e11-2f2c5b0c2f76 1c78da04f61f3bbc18627034adaf67f0 {"aliquot_tag": "DUP_d0d004a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.MethArray.Green.A C3L-01836 CCRCC Methylation_Array tissue_normal CPT0086890009 203027390029_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 78fb1b7a-7014-4667-90f1-8955462cbf39 0d4673d1e154b891a3c0d446095bd0de {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.MethArray.Green.T C3L-01836 CCRCC Methylation_Array tumor CPT0086870009 202184900127_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 0fc6c07f-eaec-44a6-bf1a-935915738899 2db1ccec5f2d3df09e51d561b7a3d8ee {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.MethArray.Red.A C3L-01836 CCRCC Methylation_Array tissue_normal CPT0086890009 203027390029_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 7e96551c-9ef4-4fa7-b344-67290ae7819d d22fd008570df3e705cdba8a4d817f17 {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.MethArray.Red.T C3L-01836 CCRCC Methylation_Array tumor CPT0086870009 202184900127_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 b68bf43a-b285-41a0-b622-39d35dce7808 bb1434cf2b7fb1ca45f8f75a600cb37a {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.miRNA-Seq.A.hg38 C3L-01836 CCRCC miRNA-Seq tissue_normal CPT0086890006 d67f5da3-1037-48ed-8a1d-9bfac58f4f3b_mirnaseq_gdc_realn.bam 181773195 BAM harmonized CPTAC3 32fdc8a1-413b-48c2-8c1a-ac97a1744d44 535949b8dd865b36650aaa65f2016293 {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.miRNA-Seq.S14_L008_R1.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086870006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L008_R1_001.unaln.bam 226158135 BAM S14_L008_R1 submitted_unaligned CPTAC3 8bc4d187-1dd6-4a76-aa51-f0e158ad0590 0b19fa6b6498dfd7e2bf31ad751c1a5c {"aliquot_tag": "ALQ_1fe28a0a", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.miRNA-Seq.S15_L005_R1.A C3L-01836 CCRCC miRNA-Seq tissue_normal CPT0086890006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L005_R1_001.unaln.bam 159544806 BAM S15_L005_R1 submitted_unaligned CPTAC3 d03167d7-e706-45ae-b4ac-1baea839b683 7804559e58b5a8f19a6e5a29a4b4b46d {"aliquot_tag": "ALQ_a0d2346b", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086870006 b3fdbe20-e876-440c-b8bb-0be8e6c9fe45_mirnaseq_gdc_realn.bam 251310992 BAM harmonized CPTAC3 dcebd156-4fda-4bf7-b632-beb00fa63347 16fd776ddbadca96c4cbe6d3acea6f5f {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.RNA-Seq.chimeric.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.chimeric.gdc_realn.bam 81264706 BAM chimeric harmonized CPTAC3 ea40b216-fba2-4f3e-bd18-b6086a86da5a cc5b4d497d40a66818d184845c1e563b {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.chimeric.gdc_realn.bam 31913672 BAM chimeric harmonized CPTAC3 9ec9fb52-0db0-4426-b1d5-509ee762a225 b3146a5629a2b1d1d1204849221b92b3 {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.RNA-Seq.genomic.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.genomic.gdc_realn.bam 6927250969 BAM genomic harmonized CPTAC3 21f809f4-0c1f-44f5-a979-f3c89699c9a8 8e0ccd68095e1c5a2518ae9de32693c8 {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.genomic.gdc_realn.bam 6926457769 BAM genomic harmonized CPTAC3 2285bc37-7e20-4da5-9548-79aec0eb6b2e 3b4107f7e4b870279fda63fae9850475 {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.RNA-Seq.S6_L002_R1.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R1_001.fastq.gz 3550419957 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 2aeeecab-38f1-4ac1-b075-46ae5151bd1a 2694dbf6dcec1866f50ba4bcc74c3cc6 {"aliquot_tag": "ALQ_a0d2346b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.RNA-Seq.S6_L002_R2.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R2_001.fastq.gz 3690039175 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 9c8f1419-35ba-4a6f-b41f-57473a598e05 0cdbc1a4dcae435ef2e5c269f9352657 {"aliquot_tag": "ALQ_a0d2346b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.RNA-Seq.S8_L006_R1.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R1_001.fastq.gz 3635126627 FASTQ S8_L006_R1 submitted_unaligned CPTAC3 a3e2839a-6453-485b-9a7d-e085f009d98a 21587f001b00b3d8bb52502ed93e85fb {"aliquot_tag": "ALQ_1fe28a0a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.RNA-Seq.S8_L006_R2.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R2_001.fastq.gz 3808781355 FASTQ S8_L006_R2 submitted_unaligned CPTAC3 9bcfe727-df26-44e6-89dd-9cd978ec3659 52964799643cff572b7aafa08ebc261a {"aliquot_tag": "ALQ_1fe28a0a", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.RNA-Seq.transcriptome.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.transcriptome.gdc_realn.bam 8595903548 BAM transcriptome harmonized CPTAC3 44feda4e-11bb-468a-9e70-dbefc99518d1 14746574bee23bcfc13fa6a48cebfa39 {"aliquot_tag": "ALQ_a0d2346b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.transcriptome.gdc_realn.bam 10457787471 BAM transcriptome harmonized CPTAC3 b3180315-db0a-44fb-8a65-d77c1e5945cc dd84357d5a0bbb5dbb753d9b84e9a264 {"aliquot_tag": "ALQ_1fe28a0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.WGS.A C3L-01836 CCRCC WGS tissue_normal CPT0086890009 CPT0086890009.WholeGenome.RP-1303.bam 57254202470 BAM submitted_aligned CPTAC3 579790bd-9932-4308-a476-2423456bd269 7c9fabafc9d0323aa52e8d540086848b {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.WGS.A.hg38 C3L-01836 CCRCC WGS tissue_normal CPT0086890009 79324909-5b7b-47bf-a656-6578f9b68759_wgs_gdc_realn.bam 83602021242 BAM harmonized CPTAC3 cddc27b7-2431-4f34-a52a-91a3268a227c 62cba56792cc52f9ab0c7feb5441123c {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.WGS.N C3L-01836 CCRCC WGS blood_normal CPT0087440002 CPT0087440002.WholeGenome.RP-1303.bam 76901474727 BAM submitted_aligned CPTAC3 4d179cd1-590e-403e-801b-b3a4489a0c05 3d8f681a58e7f4d3f5b57c6154d95d99 {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01836.WGS.N.hg38 C3L-01836 CCRCC WGS blood_normal CPT0087440002 d8619652-f544-49a1-83ca-bf3bdaaea21c_gdc_realn.bam 117651557299 BAM harmonized CPTAC3 79c2dd57-7f81-496a-b6cf-5e864f1690fd f60f8cc26b0c56aff484038c3745008b {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01836.WGS.T C3L-01836 CCRCC WGS tumor CPT0086870009 CPT0086870009.WholeGenome.RP-1303.bam 68546236862 BAM submitted_aligned CPTAC3 1a29b6aa-349b-48bb-9cfd-4bd8a680f2ee 6387b58e328a38e29301e29de1436689 {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.WGS.T.hg38 C3L-01836 CCRCC WGS tumor CPT0086870009 8ec46333-92ee-4b6a-9b5f-3cd668959bcb_gdc_realn.bam 102442208131 BAM harmonized CPTAC3 d462889b-a998-467a-8296-17046b7ab4ea b1edf15a6a716cf8da51d12563becd3f {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.WXS.A C3L-01836 CCRCC WXS tissue_normal CPT0086890009 CPT0086890009.WholeExome.RP-1303.bam 36508652073 BAM submitted_aligned CPTAC3 8703334b-55b5-4824-b182-c152c5e21cd4 d9de32c11ee420d21d14212ef52574ff {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.WXS.A.hg38 C3L-01836 CCRCC WXS tissue_normal CPT0086890009 79324909-5b7b-47bf-a656-6578f9b68759_wxs_gdc_realn.bam 50383903841 BAM harmonized CPTAC3 0393e507-06cc-4442-ae26-31291ad8bdee 22ac4d951c3fedadc179347039f7fc25 {"aliquot_tag": "ALQ_306d29fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01836.WXS.N C3L-01836 CCRCC WXS blood_normal CPT0087440002 CPT0087440002.WholeExome.RP-1303.bam 39690857130 BAM submitted_aligned CPTAC3 a3fbead7-ec05-4d25-9845-69f6c96d3597 d1cfd6e84762f8d139c17d4a5ea68869 {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01836.WXS.N.hg38 C3L-01836 CCRCC WXS blood_normal CPT0087440002 d8619652-f544-49a1-83ca-bf3bdaaea21c_gdc_realn.bam 54929211870 BAM harmonized CPTAC3 247f32de-8c96-4795-9a98-7a342e6570ec 64de381b67e8460d6952fa565c726eea {"aliquot_tag": "ALQ_8e9aff0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01836.WXS.T C3L-01836 CCRCC WXS tumor CPT0086870009 CPT0086870009.WholeExome.RP-1303.bam 36090835109 BAM submitted_aligned CPTAC3 75996363-a0cf-4d94-87c0-ffa5c2005fbf fdfff1915210bf8cd0c4ba0f4ba1ea53 {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01836.WXS.T.hg38 C3L-01836 CCRCC WXS tumor CPT0086870009 8ec46333-92ee-4b6a-9b5f-3cd668959bcb_gdc_realn.bam 49992051960 BAM harmonized CPTAC3 c889a7bb-fcd6-4246-94a8-324b1d86ef07 9b758db4fdbd1f793dd570dba1b22083 {"aliquot_tag": "ALQ_8f5d979b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.MethArray.Green.T C3L-01838 LSCC Methylation_Array tumor CPT0091820009 202234380058_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1c79268e-2033-4b85-9641-002a3087b56f 9cd2bd200b0e85b7b327e243708ce66e {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.MethArray.Red.T C3L-01838 LSCC Methylation_Array tumor CPT0091820009 202234380058_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 2af5d015-67e8-4ae1-821a-0a42e719e528 d8c64a670bf005e60bbaf89394fcd951 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.miRNA-Seq.S3_L006_R1.T C3L-01838 LSCC miRNA-Seq tumor CPT0091820006 180828_UNC32-K00270_0112_AHWTLNBBXX_GGCTAC_S3_L006_R1_001.unaln.bam 233166935 BAM S3_L006_R1 submitted_unaligned CPTAC3 d2792c66-ec60-4dc7-b24f-75f62d3e72e8 a36d72d72ad2417bd352dc6bb64d3360 {"aliquot_tag": "ALQ_de0f3b6a", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.miRNA-Seq.T.hg38 C3L-01838 LSCC miRNA-Seq tumor CPT0091820006 f349a9e2-4d76-458c-8889-4ba8d4baadbc_mirnaseq_gdc_realn.bam 262973659 BAM harmonized CPTAC3 026ec557-4962-4393-91b6-fee194896444 985ce00a1285d7f5d785102a8215ed54 {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.RNA-Seq.chimeric.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.chimeric.gdc_realn.bam 53299158 BAM chimeric harmonized CPTAC3 4cb42143-9348-4ce2-99fb-84b00d1c6e35 3112735c2858f99ccf5cb88ad50c88be {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.RNA-Seq.genomic.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.genomic.gdc_realn.bam 10812141007 BAM genomic harmonized CPTAC3 aabba18e-8308-4a90-8f92-355d3bd9f299 51c6b39fc144d62ae745c943beeb378f {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.RNA-Seq.S8_L008_R1.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4492368263 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 ae3a8cb3-0eee-4094-a16e-f943a1c700ea 409c103b9709861f7d70a0965529a851 {"aliquot_tag": "ALQ_de0f3b6a", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.RNA-Seq.S8_L008_R2.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 5173657114 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 9a365c54-2bdb-472a-9800-389b12714b78 cdce14b60208e7f64ed4cc5cebee537e {"aliquot_tag": "ALQ_de0f3b6a", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.RNA-Seq.transcriptome.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.transcriptome.gdc_realn.bam 13325369178 BAM transcriptome harmonized CPTAC3 70954a78-d547-430c-a617-0106ad06674d b21aab8d2e1fb99dd0f47930a782f2e8 {"aliquot_tag": "ALQ_de0f3b6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.WGS.N C3L-01838 LSCC WGS blood_normal CPT0093670002 CPT0093670002.WholeGenome.RP-1303.bam 81248814771 BAM submitted_aligned CPTAC3 fcd4cd9a-1955-45d4-b3d2-55fc58e4f675 00cc35627c266b97b1377fa4041561a3 {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01838.WGS.N.hg38 C3L-01838 LSCC WGS blood_normal CPT0093670002 c4403a57-0f50-47aa-8620-5271d576d48b_wgs_gdc_realn.bam 120173391896 BAM harmonized CPTAC3 803648bc-6df2-4e23-a5aa-16f4425989e8 97826738d87ca00e8eff5228afcd5eb5 {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01838.WGS.T C3L-01838 LSCC WGS tumor CPT0091820009 CPT0091820009.WholeGenome.RP-1303.bam 60802840335 BAM submitted_aligned CPTAC3 7fdbb7c0-e01d-47ca-9d3d-dc55d55a1a72 448af82b919ef1e3114d6bbb9355a76e {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.WGS.T.hg38 C3L-01838 LSCC WGS tumor CPT0091820009 1860169f-3c25-44c2-b9fd-6349950c3dc8_wgs_gdc_realn.bam 89892819518 BAM harmonized CPTAC3 26bf5415-148f-4c56-ab0f-42a7b68c8cde 838c9a13d485c5771f53e76778fa2608 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.WXS.N C3L-01838 LSCC WXS blood_normal CPT0093670002 CPT0093670002.WholeExome.RP-1303.bam 43133249661 BAM submitted_aligned CPTAC3 681808b0-97bb-4e34-a313-2af14dbb0bc9 9c93f3a16b12e0096a98bc50e08ec7cf {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01838.WXS.N.hg38 C3L-01838 LSCC WXS blood_normal CPT0093670002 c4403a57-0f50-47aa-8620-5271d576d48b_wxs_gdc_realn.bam 58339632345 BAM harmonized CPTAC3 a0fdf089-7e23-4c80-9512-fac6fa5d0f88 168aed7b8e6801bdc57b06da1ad7f58b {"aliquot_tag": "ALQ_bc17005a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01838.WXS.T C3L-01838 LSCC WXS tumor CPT0091820009 CPT0091820009.WholeExome.RP-1303.bam 44183316114 BAM submitted_aligned CPTAC3 36ec7bb1-8d1b-4cef-90d9-186cb8b52162 7d7654720c1f3a9d9185ed9c70b9d808 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01838.WXS.T.hg38 C3L-01838 LSCC WXS tumor CPT0091820009 1860169f-3c25-44c2-b9fd-6349950c3dc8_wxs_gdc_realn.bam 60706591081 BAM harmonized CPTAC3 33238c06-e075-4303-a204-659c4c9971bd 81c1e3d8f28409f19f70abeb5c765192 {"aliquot_tag": "ALQ_4eb026fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01840.MethArray.Green.T C3L-01840 UCEC Methylation_Array tumor CPT0091990009 202234360025_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 52a6aba9-c755-4059-8dbd-eb1b71fc37ce 80dd7960a727f464931ddb5b80481f4f {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.MethArray.Red.T C3L-01840 UCEC Methylation_Array tumor CPT0091990009 202234360025_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 1b77be27-d938-4d22-8275-1538bcd305b3 a1b445701dcac1006189f4942e21e61c {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.miRNA-Seq.S6_L006_R1.T C3L-01840 UCEC miRNA-Seq tumor CPT0091990006 180828_UNC32-K00270_0112_AHWTLNBBXX_AGTTCC_S6_L006_R1_001.unaln.bam 225668641 BAM S6_L006_R1 submitted_unaligned CPTAC3 7616cd16-5a17-44a5-a524-72a5bf2f4c5c a0d45909240f92319d4a5ed52332e2d7 {"aliquot_tag": "ALQ_6283d9de", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.miRNA-Seq.T.hg38 C3L-01840 UCEC miRNA-Seq tumor CPT0091990006 253e0dee-58fa-4e26-81cd-1368ea66d9b6_mirnaseq_gdc_realn.bam 247236043 BAM harmonized CPTAC3 5a025ce8-5b98-400b-85b7-96c9113f0a9e 1447808b271533bced7c594e245426d9 {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.chimeric.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.chimeric.gdc_realn.bam 35425210 BAM chimeric harmonized CPTAC3 3331c1f6-20b6-4e95-849b-f81497ef5b73 5d7da8a4a3f116b99d48a6d89729bd4e {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.chimeric.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.chimeric.gdc_realn.bam 301898505 BAM chimeric harmonized CPTAC3 dba5816f-93e9-4b59-a6ff-ce7fdabc34e8 a27bb05b385486f92cc782a7d48f3f0f {"aliquot_tag": "ALQ_eb2dfb3a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.genomic.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.genomic.gdc_realn.bam 12691718143 BAM genomic harmonized CPTAC3 fc92c486-a111-4c25-9b77-f23185acc501 23a46d513d0ab3231de26b772855325a {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.genomic.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.genomic.gdc_realn.bam 12205925575 BAM genomic harmonized CPTAC3 f8bb1dcb-08bd-4ec1-be7e-6324b951960b 8befb16ab3371072f24020b862834047 {"aliquot_tag": "ALQ_eb2dfb3a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.S2_L007_R1.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R1_001.fastq.gz 4630240820 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 0453fd6a-3eb4-45d5-95c6-85f9496c7816 1699f648db9048e19858ab1cc604bbdb {"aliquot_tag": "ALQ_6283d9de", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.S2_L007_R2.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R2_001.fastq.gz 4980375095 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 c597fc23-4760-408f-822f-6ae417004de0 b86ab7726dd458fb446f3891c09c963e {"aliquot_tag": "ALQ_6283d9de", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.S69_R1.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R1_001.fastq.gz 7209610000 FASTQ S69_R1 submitted_unaligned CPTAC3 79d96fc6-28e8-4eec-9bb2-f63b5f8bb671 c47b389172290554f7db21b6e4813528 {"aliquot_tag": "ALQ_eb2dfb3a", "sample": "S69", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.S69_R2.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R2_001.fastq.gz 7494257986 FASTQ S69_R2 submitted_unaligned CPTAC3 75d39f00-6ffd-48ac-a597-817d1d48a87f fa137b763a241fb7f7dce97388fb2236 {"aliquot_tag": "ALQ_eb2dfb3a", "sample": "S69", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.transcriptome.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.transcriptome.gdc_realn.bam 10193459073 BAM transcriptome harmonized CPTAC3 c782b126-d765-4f89-8c6f-6be6feb9ffb3 daf35b8712a81718983b7fd828c87c43 {"aliquot_tag": "ALQ_6283d9de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.RNA-Seq.transcriptome.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.transcriptome.gdc_realn.bam 6122928045 BAM transcriptome harmonized CPTAC3 8f24fc44-4fb9-4662-8d87-df3f11a7a761 9de31fd28742fb3f6bc00df2c26c384d {"aliquot_tag": "ALQ_eb2dfb3a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.WGS.N C3L-01840 UCEC WGS blood_normal CPT0093700002 CPT0093700002.WholeGenome.RP-1303.bam 59905144586 BAM submitted_aligned CPTAC3 31866f3a-8bf4-4379-8f0d-92bb5e249fef 33ab0d1b47f7e465540b210486eca9be {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01840.WGS.N.hg38 C3L-01840 UCEC WGS blood_normal CPT0093700002 bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wgs_gdc_realn.bam 87572684580 BAM harmonized CPTAC3 832dd017-471c-48ab-8b81-1d4ee65f4a4b 2aabdb017a96cf672dbb2c45b6cd9806 {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01840.WGS.T C3L-01840 UCEC WGS tumor CPT0091990009 CPT0091990009.WholeGenome.RP-1303.bam 59655339206 BAM submitted_aligned CPTAC3 7d35187b-5f0f-476b-bd17-7a53d67cde34 7cd2f8ae588fc2758b7c457673ede1fe {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.WGS.T.hg38 C3L-01840 UCEC WGS tumor CPT0091990009 b5e15343-b733-4c14-87d8-161b1e37c3be_wgs_gdc_realn.bam 87308457395 BAM harmonized CPTAC3 810231c7-c588-4775-9973-a2356a1ddfc2 5204b24b8952c3306e88d21c8307a825 {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.WXS.N C3L-01840 UCEC WXS blood_normal CPT0093700002 CPT0093700002.WholeExome.RP-1303.bam 27219695857 BAM submitted_aligned CPTAC3 f15d6774-ad3d-4381-9a40-364396208dd5 56f0d92631593c7e96c14ea14e67218a {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01840.WXS.N.hg38 C3L-01840 UCEC WXS blood_normal CPT0093700002 bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wxs_gdc_realn.bam 36252189767 BAM harmonized CPTAC3 4774dc1a-c467-46bc-8fd5-57b71339bb49 bfccad9d14f542bb7638985d64c5dd37 {"aliquot_tag": "ALQ_c56b0fef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01840.WXS.T C3L-01840 UCEC WXS tumor CPT0091990009 CPT0091990009.WholeExome.RP-1303.bam 40383125982 BAM submitted_aligned CPTAC3 7bda8c3f-4d26-45f5-921e-4014d62112dd 0a004ff8a2e75227c9716822e52bbc94 {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01840.WXS.T.hg38 C3L-01840 UCEC WXS tumor CPT0091990009 b5e15343-b733-4c14-87d8-161b1e37c3be_wxs_gdc_realn.bam 56398414014 BAM harmonized CPTAC3 7f428eb9-3cb6-45b0-bdac-3391556ecacd 3a285e41af7998f357d3beff2a3e4d58 {"aliquot_tag": "ALQ_f23cc44f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01861.DUP_4cc1a30.miRNA-Seq.S9_L001_R1.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092280006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTAGCT_S9_L001_R1_001.unaln.bam 315870709 BAM S9_L001_R1 submitted_unaligned CPTAC3 73a38291-2a86-46da-9627-836d76c79ce3 5e8b3d138cf8a1047821f36cb684024b {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_4cc1a30.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092280006 cb298910-251c-4263-aa0c-954590b3b533_mirnaseq_gdc_realn.bam 348131454 BAM harmonized CPTAC3 6ebeb278-c9b7-46dc-965b-6e4f61631b1c b6744e6383f4d86609ea39fe12a4b32f {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_4cc1a30.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.chimeric.gdc_realn.bam 51456700 BAM chimeric harmonized CPTAC3 2cc3ac24-cf16-4234-baa9-ebb44e16635b 8e94fe45b6cdef4870c65dccd3ce06cd {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_4cc1a30.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.genomic.gdc_realn.bam 7454009525 BAM genomic harmonized CPTAC3 02b7d40f-e69f-4744-b5c6-ac3ad03db668 5875a1db7d51a10f6af48dfc6000c3d9 {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_4cc1a30.RNA-Seq.S31_L008_R1.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R1_001.fastq.gz 3603210624 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 e05ca40e-28a6-4ed3-acad-dcaccee06f9f 6f494948de699e7f20d4e4a7b5f325d8 {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_4cc1a30.RNA-Seq.S31_L008_R2.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R2_001.fastq.gz 4096244295 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 bcfffcc7-8d6f-4195-825e-48d10cbc2ad5 4e5d8dd50c0a9d7040a08709edc8b995 {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_4cc1a30.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.transcriptome.gdc_realn.bam 9642037744 BAM transcriptome harmonized CPTAC3 f9fcb7ca-55a9-4a5e-9ef2-d1a9f25802fb 55b19746d6375beed05ece55914b6bcf {"aliquot_tag": "DUP_4cc1a30", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_6f5f9fc5.MethArray.Green.T C3L-01861 CCRCC Methylation_Array tumor CPT0092300009 204367460011_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 53730193-2e1b-4f6b-abeb-e59fd4f35588 53b2fb80eafb45d760d6a1e94c774b7f {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_6f5f9fc5.MethArray.Red.T C3L-01861 CCRCC Methylation_Array tumor CPT0092300009 204367460011_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 260c9ecb-f5a1-4371-af85-6fb8e6417def b4ad457112d9240ce8e117dc00eb8cc4 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_6f5f9fc5.WGS.T C3L-01861 CCRCC WGS tumor CPT0092300009 CPT0092300009.WholeGenome.RP-2158.bam 23790404592 BAM submitted_aligned CPTAC3 64d854fe-f993-4254-8a8b-fa1a9b762494 bec5f519120672a4fc03b0a1d91dceef {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_6f5f9fc5.WGS.T.hg38 C3L-01861 CCRCC WGS tumor CPT0092300009 6eea291f-724e-4891-a6d7-a1244823d6c8_wgs_gdc_realn.bam 68767554170 BAM harmonized CPTAC3 d744d7f9-95ca-4a9b-808f-eac7bcccdb1c 3708eb9ef0cc770a93ad2580ae0a82d5 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_6f5f9fc5.WXS.T C3L-01861 CCRCC WXS tumor CPT0092300009 CPT0092300009.WholeExome.RP-1303.bam 22750019576 BAM submitted_aligned CPTAC3 fcf5c23e-6d46-4394-9762-2987efcd5b53 5e58ad39b8a0d214d840febdd6e1e729 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_6f5f9fc5.WXS.T.hg38 C3L-01861 CCRCC WXS tumor CPT0092300009 6eea291f-724e-4891-a6d7-a1244823d6c8_wxs_gdc_realn.bam 31344431338 BAM harmonized CPTAC3 4948a696-6c97-40ad-9a89-88797d538070 e4763062d80a9a6af6fb65ad1dbb68b2 {"aliquot_tag": "DUP_6f5f9fc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_947307a1.MethArray.Green.T C3L-01861 CCRCC Methylation_Array tumor CPT0092280009 204372030070_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c6896b39-cccf-4a62-a074-5f136c62596b 13eca5262159d97016c3a58a7bd814c0 {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_947307a1.MethArray.Red.T C3L-01861 CCRCC Methylation_Array tumor CPT0092280009 204372030070_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 f739728a-d1f8-4cb2-9b81-718b8766df47 cc9b62d0a073e77cb303ea408811dfe9 {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_947307a1.WGS.T C3L-01861 CCRCC WGS tumor CPT0092280009 CPT0092280009.WholeGenome.RP-2158.bam 25385069979 BAM submitted_aligned CPTAC3 b77d317c-3a68-439e-bcce-1ad8b64403d2 004102c5ffb02de5a91db37a65548731 {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_947307a1.WGS.T.hg38 C3L-01861 CCRCC WGS tumor CPT0092280009 5c4f72e3-5b4e-4abb-9db7-82f0cacab835_wgs_gdc_realn.bam 74010938863 BAM harmonized CPTAC3 32af36fc-90ac-4133-abd0-436f6e689515 9ddf8f430b13e30ebce3db2a8d2afefd {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_947307a1.WXS.T C3L-01861 CCRCC WXS tumor CPT0092280009 CPT0092280009.WholeExome.RP-1303.bam 17401476180 BAM submitted_aligned CPTAC3 23775c6b-7f49-4893-9920-202bce04f5ca 5ea43ea4fe23e6fe069ef89f906997bf {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_947307a1.WXS.T.hg38 C3L-01861 CCRCC WXS tumor CPT0092280009 5c4f72e3-5b4e-4abb-9db7-82f0cacab835_wxs_gdc_realn.bam 24174719767 BAM harmonized CPTAC3 7fac0c5e-9201-483b-be8b-a7591e07c0b2 cfcb213808c65a220492507171a464ad {"aliquot_tag": "DUP_947307a1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_ffe08254.miRNA-Seq.S10_L001_R1.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092300006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L001_R1_001.unaln.bam 234550563 BAM S10_L001_R1 submitted_unaligned CPTAC3 cc0a8d45-43d8-4734-a275-2e8e7d5d9fa3 fea748c721e314f9d1e401311c0d1d38 {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_ffe08254.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092300006 6ea257b2-6e28-40b8-8560-9fda136b89ad_mirnaseq_gdc_realn.bam 259073209 BAM harmonized CPTAC3 11eb2f89-9378-4184-8b05-695dc9cc9d79 bba8757e736b63b106216ffc3ad9aa2b {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_ffe08254.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.chimeric.gdc_realn.bam 44867305 BAM chimeric harmonized CPTAC3 7186d3da-6de8-4435-986e-78a98b3b094d 208ab766bc70233e9249eb56a51bb861 {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_ffe08254.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.genomic.gdc_realn.bam 7872779832 BAM genomic harmonized CPTAC3 40884817-f053-4fc4-9811-69cbc3e4e3e8 b9522af5982f6f24d458041c8f2c2e0d {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_ffe08254.RNA-Seq.S30_L008_R1.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R1_001.fastq.gz 3568920690 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 1ad2341c-5b62-4ec7-b0da-7b417d931840 61fcdc951d6b7dbff76b9e69546b149b {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_ffe08254.RNA-Seq.S30_L008_R2.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R2_001.fastq.gz 4321608798 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 0d63abc1-54c4-447f-8687-683eeec387a5 dc6ecc722b0d1958c152c1f670e12a3e {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.DUP_ffe08254.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.transcriptome.gdc_realn.bam 9172557324 BAM transcriptome harmonized CPTAC3 25aad822-7ac0-4d62-9fd1-794852401f15 e7b159c232d657a11ddc08edd653fad8 {"aliquot_tag": "DUP_ffe08254", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.MethArray.Green.A C3L-01861 CCRCC Methylation_Array tissue_normal CPT0092310009 204930630107_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9fdb30f0-efe8-4aa7-803a-0b52259b3077 d803622eea9ab01be29030547ff0e6ba {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.MethArray.Green.T C3L-01861 CCRCC Methylation_Array tumor CPT0092290008 202234370091_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e29fb20a-4aa3-4941-a00f-bff79be1f5af 742add2ac72655365caba9dea3f88533 {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.MethArray.Red.A C3L-01861 CCRCC Methylation_Array tissue_normal CPT0092310009 204930630107_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 42953785-ebdc-49de-81a6-8f6b5b68eb4f a46165af4a76a26e8d8b3e30e0ec683c {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.MethArray.Red.T C3L-01861 CCRCC Methylation_Array tumor CPT0092290008 202234370091_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 6f57a2a7-e892-46ab-9465-536de9d0e0e6 21d0d3455617582cb62608b44052303e {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.miRNA-Seq.A.hg38 C3L-01861 CCRCC miRNA-Seq tissue_normal CPT0092310006 c78059d0-f010-4e55-bdb4-7a8c7cb61d65_mirnaseq_gdc_realn.bam 215400882 BAM harmonized CPTAC3 b8170273-f602-4c81-8520-00b4d711152a ea3de70640c304bf2a6e78194526c270 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.miRNA-Seq.S19_L005_R1.A C3L-01861 CCRCC miRNA-Seq tissue_normal CPT0092310006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L005_R1_001.unaln.bam 194998969 BAM S19_L005_R1 submitted_unaligned CPTAC3 97d610c5-3236-48ac-80d0-a9d6bd344354 c94197ab089cdaca4229910aca7280c5 {"aliquot_tag": "ALQ_c280abe4", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.miRNA-Seq.S26_L003_R1.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092290005 181119_UNC31-K00269_0165_AH27WCBBXY_CGATGT_S26_L003_R1_001.unaln.bam 270625391 BAM S26_L003_R1 submitted_unaligned CPTAC3 ad88944a-abb8-4ac6-825a-88fdf2daf161 93a13168d557355dca01c02fcd9d2dc9 {"aliquot_tag": "ALQ_a0a5623a", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092290005 38be969b-47f9-4081-b857-ddcb771518ff_mirnaseq_gdc_realn.bam 300992995 BAM harmonized CPTAC3 d81c620c-2331-456d-bb55-c816b9d72785 8a3f3ca7c80554380aeb3cbaa6b72635 {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.RNA-Seq.chimeric.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.chimeric.gdc_realn.bam 93740365 BAM chimeric harmonized CPTAC3 3e81d439-6672-4a2c-8b7e-4c32421257e3 49e976c037d9bc63eb404e4cd32051f9 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.chimeric.gdc_realn.bam 39528028 BAM chimeric harmonized CPTAC3 662ad4f1-9e68-4347-b9f2-4aef9a45ce9c 26869220a1d4662dc4c70a7d57fe2bfa {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.RNA-Seq.genomic.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.genomic.gdc_realn.bam 8157494376 BAM genomic harmonized CPTAC3 bb2907c6-d8e6-4caa-9ef2-863a585c902b 5f9da83d37a9d52dc447d416d9d0d545 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.genomic.gdc_realn.bam 9538428600 BAM genomic harmonized CPTAC3 cdd14852-a7be-4c3f-a0e7-0f65b34e01e5 1e133bb29c4c9d532f4c894c99ebe6f7 {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.RNA-Seq.S2_L001_R1.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R1_001.fastq.gz 4271755155 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 2ecc3a28-7e0e-4680-9f69-77060ad2835f 0de5c2276244549a54adf7ac155dd629 {"aliquot_tag": "ALQ_c280abe4", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.RNA-Seq.S2_L001_R2.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R2_001.fastq.gz 4468740133 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 7ea16c75-8f3d-40ac-83cb-eb1b8103e5ba 4255d648ff6836ed5ea677abcaa57074 {"aliquot_tag": "ALQ_c280abe4", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.RNA-Seq.S49_L004_R1.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R1_001.fastq.gz 4425587923 FASTQ S49_L004_R1 submitted_unaligned CPTAC3 dad117ab-2b82-4007-8738-65dd691734bc 5191b5d2dcb74677829ba66f04c61265 {"aliquot_tag": "ALQ_a0a5623a", "sample": "S49", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.RNA-Seq.S49_L004_R2.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R2_001.fastq.gz 4907942717 FASTQ S49_L004_R2 submitted_unaligned CPTAC3 f0a3c65b-b19d-4dd2-b374-45f0bc1056dd def617a813991ec92a4fe62a3da74d31 {"aliquot_tag": "ALQ_a0a5623a", "sample": "S49", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.RNA-Seq.transcriptome.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.transcriptome.gdc_realn.bam 10321800248 BAM transcriptome harmonized CPTAC3 ac7769d6-7148-4c7a-9f31-0e4bfcf7d843 eee8aa13fb9f396ef8a9180f43dd47c3 {"aliquot_tag": "ALQ_c280abe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.transcriptome.gdc_realn.bam 10900309173 BAM transcriptome harmonized CPTAC3 722b81c2-4f10-4f15-8789-20cb3e4cb239 b64f0ddcfa4ac3275108261da84337d6 {"aliquot_tag": "ALQ_a0a5623a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.WGS.A C3L-01861 CCRCC WGS tissue_normal CPT0092310009 CPT0092310009.WholeGenome.RP-1303.bam 63933194648 BAM submitted_aligned CPTAC3 bd6271df-8a20-4b2e-811d-47bbecfd7693 ca6e520e348905ff61f085e8a7ad007c {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.WGS.A.hg38 C3L-01861 CCRCC WGS tissue_normal CPT0092310009 12053926-97e3-4dab-ba27-56a85edfa7ff_wgs_gdc_realn.bam 92682235660 BAM harmonized CPTAC3 bdd3b337-fe3e-4276-9aa3-2bc249cbca53 508399c4e8993fa27288992ec56c9316 {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.WGS.N C3L-01861 CCRCC WGS blood_normal CPT0093770002 CPT0093770002.WholeGenome.RP-1303.bam 68324502586 BAM submitted_aligned CPTAC3 783791b8-e6ad-4a3e-b5fd-69fe58e77d56 60a927a41946e1dbc75aa2ffbff704e3 {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01861.WGS.N.hg38 C3L-01861 CCRCC WGS blood_normal CPT0093770002 f912ddc2-0ba2-4be5-aad6-aa64ad5fa1b4_wgs_gdc_realn.bam 101514670414 BAM harmonized CPTAC3 1445162e-5fb8-408f-825e-2e75513b98f5 2e2de7192c2173b2c4e0809ae5d85642 {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01861.WGS.T C3L-01861 CCRCC WGS tumor CPT0092290008 CPT0092290008.WholeGenome.RP-1303.bam 66852587518 BAM submitted_aligned CPTAC3 bdf302fe-63f2-4a75-b6d4-bf71afae7ab9 7b9c64b5c79cdf247a4b47d4aec39075 {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.WGS.T.hg38 C3L-01861 CCRCC WGS tumor CPT0092290008 b35c7cca-5e9e-4445-8b60-2427084ce2b7_wgs_gdc_realn.bam 97659798132 BAM harmonized CPTAC3 cfe57b0d-4483-421e-9820-cf02e9269548 579ecab3514d3a0cb1c15f44633fc14b {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.WXS.A C3L-01861 CCRCC WXS tissue_normal CPT0092310009 CPT0092310009.WholeExome.RP-1303.bam 55192751095 BAM submitted_aligned CPTAC3 120b7b9c-91da-4504-a5fb-d8256208615d 367ab4ccc2fb52bbeeba8ff8f88648c8 {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.WXS.A.hg38 C3L-01861 CCRCC WXS tissue_normal CPT0092310009 12053926-97e3-4dab-ba27-56a85edfa7ff_wxs_gdc_realn.bam 74920230427 BAM harmonized CPTAC3 8cfd084b-29ed-4b39-bbf9-721ee40a728b d9528608c87c84c754bf0ff648b9339e {"aliquot_tag": "ALQ_523fb675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01861.WXS.N C3L-01861 CCRCC WXS blood_normal CPT0093770002 CPT0093770002.WholeExome.RP-1303.bam 37631380019 BAM submitted_aligned CPTAC3 80f3070d-1937-4b77-b4c0-7ba621b18f1e 28bd80f0d20f065087005d4598c3815c {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01861.WXS.N.hg38 C3L-01861 CCRCC WXS blood_normal CPT0093770002 f912ddc2-0ba2-4be5-aad6-aa64ad5fa1b4_wxs_gdc_realn.bam 51585129445 BAM harmonized CPTAC3 3cc6f8b6-730c-4a45-8475-4f6818ee920b 02f29ea6f8f5d613ae09a44f2570b3c3 {"aliquot_tag": "ALQ_774bd3ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01861.WXS.T C3L-01861 CCRCC WXS tumor CPT0092290008 CPT0092290008.WholeExome.RP-1303.bam 37674706888 BAM submitted_aligned CPTAC3 0c01bc5e-6fa1-4692-ae47-2f027a0cafa2 4907d449efa78445c462ace2df16638b {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01861.WXS.T.hg38 C3L-01861 CCRCC WXS tumor CPT0092290008 b35c7cca-5e9e-4445-8b60-2427084ce2b7_wxs_gdc_realn.bam 52960795936 BAM harmonized CPTAC3 eca71105-fdc4-4bd6-957e-ab0bd45d633a ba01eb183415e6d5c377a65d0050078e {"aliquot_tag": "ALQ_de141e87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.MethArray.Green.T C3L-01862 LUAD Methylation_Array tumor CPT0092530009 202234370079_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e848e74e-5a73-4f4a-a916-b33930a82636 9592ec24abeeb545c4f7c364bb3f6d45 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.MethArray.Red.T C3L-01862 LUAD Methylation_Array tumor CPT0092530009 202234370079_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d7de1cac-0c4f-4e22-8c58-872d137e44fd 63e1a73037da8bad1150b7669233cda8 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.miRNA-Seq.S12_L007_R1.T C3L-01862 LUAD miRNA-Seq tumor CPT0092530006 180724_UNC32-K00270_0106_BHWK3MBBXX_CCAACA_S12_L007_R1_001.unaln.bam 235287641 BAM S12_L007_R1 submitted_unaligned CPTAC3 2ffff661-1587-474c-a731-2b9cf09022f4 1f51102365f8c7893268f63d1ff51c72 {"aliquot_tag": "ALQ_6e191b99", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.miRNA-Seq.T.hg38 C3L-01862 LUAD miRNA-Seq tumor CPT0092530006 ececbc0c-233e-484d-ae47-d4470a3c1ca9_mirnaseq_gdc_realn.bam 255210704 BAM harmonized CPTAC3 2329767b-6ef7-472d-bbfc-6dc9e88ffbb7 4b2e392752a71270b9f43b7a10caca28 {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.RNA-Seq.chimeric.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.chimeric.gdc_realn.bam 36820813 BAM chimeric harmonized CPTAC3 d9addc7d-ae44-4f76-af16-e46988b7af99 51b92a40cec2ea9689084bc805c76b3e {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.RNA-Seq.genomic.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.genomic.gdc_realn.bam 8965761700 BAM genomic harmonized CPTAC3 ed0e9d1c-9308-46d1-b61d-85674973c0c0 7a9c73e663fd926e81be2ab36da69669 {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.RNA-Seq.S19_L005_R1.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 4120978178 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 4219c6a3-ebfd-44b3-9d38-201568490256 dad67421df5aa53e348b262a9e5b23a7 {"aliquot_tag": "ALQ_6e191b99", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.RNA-Seq.S19_L005_R2.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4548879892 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 465e52f3-5a50-4f1e-808a-6778c1c318d5 aa50cc07d36a5f0c62e78c0cea5a6eef {"aliquot_tag": "ALQ_6e191b99", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.RNA-Seq.transcriptome.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.transcriptome.gdc_realn.bam 11340324515 BAM transcriptome harmonized CPTAC3 bb608a20-80f0-4e79-9424-21013332753c b60bf4c2ce7f9ae7911b9c227d290750 {"aliquot_tag": "ALQ_6e191b99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.WGS.N C3L-01862 LUAD WGS blood_normal CPT0093710002 CPT0093710002.WholeGenome.RP-1303.bam 58849921309 BAM submitted_aligned CPTAC3 b17ae2c3-1c0f-408a-97b5-912d614bf173 b2ed7f7b2f9ade022a26eaafbfa0a00f {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01862.WGS.N.hg38 C3L-01862 LUAD WGS blood_normal CPT0093710002 57736f53-612c-4e10-a5f2-2bb931276189_wgs_gdc_realn.bam 86753067559 BAM harmonized CPTAC3 a4c24fbd-b085-4bbd-b8d1-068c9eb717aa 9dfe75789bd28fcba3eca63737bb67c5 {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01862.WGS.T C3L-01862 LUAD WGS tumor CPT0092530009 CPT0092530009.WholeGenome.RP-1303.bam 63378526865 BAM submitted_aligned CPTAC3 0fbb3ceb-3e6b-4ebb-8269-b0f54b71a7a3 2b959ae2936c017f779ea6b9a7a4520a {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.WGS.T.hg38 C3L-01862 LUAD WGS tumor CPT0092530009 fb3d8bc7-276c-4e3d-a25d-f45f8cacb57d_wgs_gdc_realn.bam 94849261597 BAM harmonized CPTAC3 06d683c0-4e34-4b3a-8267-45c25c2f77e8 273a5b175c2abf059225471ba977a726 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.WXS.N C3L-01862 LUAD WXS blood_normal CPT0093710002 CPT0093710002.WholeExome.RP-1303.bam 35082825490 BAM submitted_aligned CPTAC3 23d06b44-e152-4908-84b3-dc1b4ad0f436 1ef07b48360f36f18b1b0086cecf18ab {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01862.WXS.N.hg38 C3L-01862 LUAD WXS blood_normal CPT0093710002 57736f53-612c-4e10-a5f2-2bb931276189_wxs_gdc_realn.bam 46554500635 BAM harmonized CPTAC3 de85bf55-9dcb-4a92-b85b-218d58916de2 23cdbaedfe721c0f47512808fb4e2b47 {"aliquot_tag": "ALQ_f80b265f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01862.WXS.T C3L-01862 LUAD WXS tumor CPT0092530009 CPT0092530009.WholeExome.RP-1303.bam 28515107949 BAM submitted_aligned CPTAC3 7d3f7e24-3283-46f4-8c3b-7f885c74d3cc 3aee21b99ea46c66fd864ade7986f007 {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01862.WXS.T.hg38 C3L-01862 LUAD WXS tumor CPT0092530009 fb3d8bc7-276c-4e3d-a25d-f45f8cacb57d_wxs_gdc_realn.bam 38665774426 BAM harmonized CPTAC3 181112d7-77a9-4439-b080-af2cdad07dd1 72dee14d942d453eb123b506bcacec0d {"aliquot_tag": "ALQ_fea60608", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01864.ADD_8ad89aa6.MethArray.Green.T C3L-01864 UCEC Methylation_Array tumor CPT0092860009 202234370086_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9053923b-97db-47b6-a689-68dcd46935e5 e7fe1190d307dfe9a39a1ae706669d20 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.ADD_8ad89aa6.MethArray.Red.T C3L-01864 UCEC Methylation_Array tumor CPT0092860009 202234370086_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 b72a0ee1-7d4f-4a0f-b222-896d4e27c81e aa3d3b9b41517299588021a6a31abcfd {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.ADD_8ad89aa6.WGS.T C3L-01864 UCEC WGS tumor CPT0092860009 CPT0092860009.WholeGenome.RP-1303.bam 66887616993 BAM submitted_aligned CPTAC3 1c9ccf54-f825-4b68-ad00-163ac120bdc7 a3f930ecceefabdaa55f1d4315926712 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.ADD_8ad89aa6.WGS.T.hg38 C3L-01864 UCEC WGS tumor CPT0092860009 31aa7828-c230-4711-a349-8bf53fd585a3_wgs_gdc_realn.bam 99867810467 BAM harmonized CPTAC3 4fce4f98-6af5-4951-98ad-86af45cf17ca 51109657b8a39074a5610e79fbb9ddb1 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.ADD_8ad89aa6.WXS.T C3L-01864 UCEC WXS tumor CPT0092860009 CPT0092860009.WholeExome.RP-1303.bam 49492814707 BAM submitted_aligned CPTAC3 06b1e0d9-a81e-4fc8-b99a-f44330cac9e7 42042f257a742cb5d10c5d1c10c7c168 {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.ADD_8ad89aa6.WXS.T.hg38 C3L-01864 UCEC WXS tumor CPT0092860009 31aa7828-c230-4711-a349-8bf53fd585a3_wxs_gdc_realn.bam 67184302768 BAM harmonized CPTAC3 f931272e-d6b4-4528-9ae0-d0c0b4bf2607 188a5270182a447b69c9b2c7095b843d {"aliquot_tag": "ADD_8ad89aa6", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.miRNA-Seq.S17_L007_R1.T C3L-01864 UCEC miRNA-Seq tumor CPT0092860006 180724_UNC32-K00270_0106_BHWK3MBBXX_GACGAC_S17_L007_R1_001.unaln.bam 250664341 BAM S17_L007_R1 submitted_unaligned CPTAC3 f971a0b1-88cb-41b0-a113-7bac19d2b90e d2660864ede4f24aeddbe03b1d96b2b1 {"aliquot_tag": "ALQ_1a678737", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.miRNA-Seq.T.hg38 C3L-01864 UCEC miRNA-Seq tumor CPT0092860006 da25a4de-2fe7-4937-9172-37a99df7da2f_mirnaseq_gdc_realn.bam 266255007 BAM harmonized CPTAC3 d8ed9995-3186-482b-85c4-3ae4b3f56cf1 2e9dfeaddd49491fb3eb562b67a275de {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.chimeric.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.chimeric.gdc_realn.bam 50344139 BAM chimeric harmonized CPTAC3 b28deb90-4d19-48ee-b78a-1b93b489e44d 884e9dd43e00291dd1d4256264190cfc {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.chimeric.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.chimeric.gdc_realn.bam 198100560 BAM chimeric harmonized CPTAC3 919cc0e6-205c-4f6a-bc5e-9598c91c4bb5 71766bd14491886ad501cb7b6e644d29 {"aliquot_tag": "ALQ_ac8d81ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.genomic.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.genomic.gdc_realn.bam 9784918294 BAM genomic harmonized CPTAC3 357c63dd-ecd1-49f6-8cfd-c5c9b6d877c5 1d033b6854eb9e1e9b1de35126b4c634 {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.genomic.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.genomic.gdc_realn.bam 10087932541 BAM genomic harmonized CPTAC3 16410db8-c28a-4a16-896e-ce6e490d5a97 e3a31dea13fa2f4850ea0e91b091bd5b {"aliquot_tag": "ALQ_ac8d81ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.S7_R1.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R1_001.fastq.gz 5945382344 FASTQ S7_R1 submitted_unaligned CPTAC3 747b9cc5-9795-488c-b15b-68c836c9c7a1 cf69aee1759d7053bb031a6ed55f1cb9 {"aliquot_tag": "ALQ_ac8d81ea", "sample": "S7", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.S7_R2.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R2_001.fastq.gz 6194710624 FASTQ S7_R2 submitted_unaligned CPTAC3 06e4023e-2f67-47f8-bfc1-c3c4048e9439 e37adee3309539f70472cc4382350f6c {"aliquot_tag": "ALQ_ac8d81ea", "sample": "S7", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.S9_L003_R1.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4601825908 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 1e51c9a1-a6ee-41d5-b3bc-9b61f6615133 101c490bc789383adf71b8a5ed5b52cf {"aliquot_tag": "ALQ_1a678737", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.S9_L003_R2.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 5164853456 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 4d4b982f-8785-4328-a444-2bd0a18f44bc d4d95800eeb9b06f7cff199b8a964a1f {"aliquot_tag": "ALQ_1a678737", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.transcriptome.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.transcriptome.gdc_realn.bam 13215413605 BAM transcriptome harmonized CPTAC3 c3f2efb3-b3e1-4413-b442-b8e18a64a105 1065bc3860760da80667e78e068e267d {"aliquot_tag": "ALQ_1a678737", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.RNA-Seq.transcriptome.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.transcriptome.gdc_realn.bam 5923225814 BAM transcriptome harmonized CPTAC3 4ab216eb-2070-460b-85d6-a8aae458bac2 58e7e89ea543b7368a90831a187afdca {"aliquot_tag": "ALQ_ac8d81ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01864.WGS.N C3L-01864 UCEC WGS blood_normal CPT0093840002 CPT0093840002.WholeGenome.RP-1303.bam 61379417141 BAM submitted_aligned CPTAC3 88ed8c9f-aea6-479b-a9ba-f8904ec7c833 46e843566813fbff4d46d0e0a4a68984 {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01864.WGS.N.hg38 C3L-01864 UCEC WGS blood_normal CPT0093840002 ebcd3c59-6e3a-4913-8bc4-50fe264a0f67_wgs_gdc_realn.bam 89371314010 BAM harmonized CPTAC3 bcbc24e7-469a-41ab-8589-f6481dcd15f6 9c649ac132e23f543b351da4a76c88e2 {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01864.WXS.N C3L-01864 UCEC WXS blood_normal CPT0093840002 CPT0093840002.WholeExome.RP-1303.bam 32526733430 BAM submitted_aligned CPTAC3 d93ada75-e013-4c14-9945-0a8dde071738 09a5b854eeb821aa15211636d5021587 {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01864.WXS.N.hg38 C3L-01864 UCEC WXS blood_normal CPT0093840002 ebcd3c59-6e3a-4913-8bc4-50fe264a0f67_wxs_gdc_realn.bam 44181681486 BAM harmonized CPTAC3 12f4261d-c0e1-4088-8f69-003acb306e5a 8c8ec4f147d1c4a1648bf011bb3a2d9a {"aliquot_tag": "ALQ_c1bd1bfa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01865.MethArray.Green.A C3L-01865 CCRCC Methylation_Array tissue_normal CPT0392290006 205549610122_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 239350e6-b2c5-4672-8bcb-e13c4e094cd1 5a58e27eed41164e60b443bfcb24226f {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.MethArray.Green.T C3L-01865 CCRCC Methylation_Array tumor CPT0392260006 205589730117_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 01f3f3db-494e-4efa-b2cc-d54399d7fb15 e57e393956a4d5b43d31dfdb93380086 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.MethArray.Red.A C3L-01865 CCRCC Methylation_Array tissue_normal CPT0392290006 205549610122_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 a10b3844-4666-4a81-b133-08fbd32ebb60 4ae9ccef39955f6f3eb21ebca2332200 {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.MethArray.Red.T C3L-01865 CCRCC Methylation_Array tumor CPT0392260006 205589730117_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 079039ad-a3b1-47a3-a3fb-1cd8c7f10aab d815d3d5129e3575f855948c22d7d3fa {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.miRNA-Seq.A.hg38 C3L-01865 CCRCC miRNA-Seq tissue_normal CPT0392290009 83131548-9c7d-4f78-a54c-66276dae8545_mirnaseq_gdc_realn.bam 367302843 BAM harmonized CPTAC3 7048228b-e5a6-4780-a997-81a65b244571 662c14b8a0320a6f4a83248b5cafee8a {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.miRNA-Seq.S36_L002_R1.T C3L-01865 CCRCC miRNA-Seq tumor CPT0392260009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCCCGA_S36_L002_R1_001.unaln.bam 231692977 BAM S36_L002_R1 submitted_unaligned CPTAC3 8780f5ff-7010-45e0-ad0e-d4e47cef0421 9f81e6bd88d49bd683db76c67e5a7614 {"aliquot_tag": "ALQ_12ce8505", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.miRNA-Seq.S37_L002_R1.A C3L-01865 CCRCC miRNA-Seq tissue_normal CPT0392290009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGAAG_S37_L002_R1_001.unaln.bam 335941419 BAM S37_L002_R1 submitted_unaligned CPTAC3 6b9d6623-bdec-495a-81cd-40e1e631d61c e67ece03c7fd21a2d9a6eafe2b0feb79 {"aliquot_tag": "ALQ_909e12d4", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.miRNA-Seq.T.hg38 C3L-01865 CCRCC miRNA-Seq tumor CPT0392260009 cd5754c0-0bd2-4470-aa09-f411a7d1d1b1_mirnaseq_gdc_realn.bam 250578124 BAM harmonized CPTAC3 120b5166-f72b-4032-8943-2f6af8e8803a 6f4bfff14f936acee945daf24cf71172 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.RNA-Seq.chimeric.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.chimeric.gdc_realn.bam 437214999 BAM chimeric harmonized CPTAC3 17be6839-c07c-4314-a659-6937ed574411 152e606ab1db5a7d111a6822a4be05c7 {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.RNA-Seq.chimeric.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.chimeric.gdc_realn.bam 288024570 BAM chimeric harmonized CPTAC3 71840ad2-fa35-4166-9ce3-4c502e82200c 5e03d7d78026fff79c4c22d64c2a46a9 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.RNA-Seq.genomic.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.genomic.gdc_realn.bam 9332146569 BAM genomic harmonized CPTAC3 c578bda2-2c37-4111-9612-69b9c1f579ef 223eca59b884f6a90d03394e92fcc6cf {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.RNA-Seq.genomic.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.genomic.gdc_realn.bam 7224821838 BAM genomic harmonized CPTAC3 3c6ee22c-38d9-4af8-9976-f4b576ade5a8 b3fa7ae4ce1902fd468b8e07d0250ab3 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.RNA-Seq.S20_L006_R1.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R1_001.fastq.gz 3456379596 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 5e02e48c-21d8-458d-88cf-c84adca0d5de e6cda8722316fe5a6cea838f4860a35f {"aliquot_tag": "ALQ_12ce8505", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.RNA-Seq.S20_L006_R2.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R2_001.fastq.gz 3829029386 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 dc84f53c-25fd-489e-b417-f5645d72840c 767a53e4e1e2f7bbf32af458db2e9836 {"aliquot_tag": "ALQ_12ce8505", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.RNA-Seq.S21_L006_R1.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4476794263 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 f5b3d245-d6ed-44e1-a413-2530f7807c26 19fa092c74a002c1cdf0384195024f57 {"aliquot_tag": "ALQ_909e12d4", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.RNA-Seq.S21_L006_R2.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 4988372571 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 bf810b10-9635-4312-b143-3183e225d9d3 f878af3417517c09ba5abd6510cc9f48 {"aliquot_tag": "ALQ_909e12d4", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.RNA-Seq.transcriptome.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.transcriptome.gdc_realn.bam 12031452817 BAM transcriptome harmonized CPTAC3 157271a4-31a5-406e-8d81-aea218b00b61 f1d72ef7d924bd6e962f6a82eb93ad57 {"aliquot_tag": "ALQ_909e12d4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.RNA-Seq.transcriptome.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.transcriptome.gdc_realn.bam 10305449476 BAM transcriptome harmonized CPTAC3 efbed705-7bdf-493d-a9e1-66ddf1e0b77d 64fff06b82cb42704d1b5f8f3fce06f4 {"aliquot_tag": "ALQ_12ce8505", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.WGS.N C3L-01865 CCRCC WGS blood_normal CPT0392340002 CPT0392340002.WholeGenome.RP-2158.bam 25740747985 BAM submitted_aligned CPTAC3 a7a9ffb6-c195-4abe-b96e-c4286ab30f4f 6e184f9edd13fae7b9c43b6f53e1bfd3 {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01865.WGS.N.hg38 C3L-01865 CCRCC WGS blood_normal CPT0392340002 c8f6b46e-e17d-46dc-9b9e-cc78f9700bec_wgs_gdc_realn.bam 77793818370 BAM harmonized CPTAC3 58cd4cf6-7437-4a6f-9691-2d3f0f263ecc 3a4e1fe4f00627a364751487a3aacdce {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01865.WGS.T C3L-01865 CCRCC WGS tumor CPT0392260006 CPT0392260006.WholeGenome.RP-2158.bam 41294115179 BAM submitted_aligned CPTAC3 d245af47-abec-4707-af46-1e92b6f8d339 3948f0a2b3bd04aa7abab4871bb06335 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.WGS.T.hg38 C3L-01865 CCRCC WGS tumor CPT0392260006 33f7ef4e-f5f4-487d-8ef7-0262212153cf_wgs_gdc_realn.bam 111685812126 BAM harmonized CPTAC3 cea48399-24d7-403c-b78c-e920235c065b 9e38d7cfb8970a2084b5d6d2408e6616 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.WXS.A C3L-01865 CCRCC WXS tissue_normal CPT0392290006 CPT0392290006.WholeExome.RP-1303.bam 20606064608 BAM submitted_aligned CPTAC3 a02f802e-0d14-4294-8b71-a2d30796b163 8098ea474c3a81e597b7df242d798235 {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01865.WXS.A.hg38 C3L-01865 CCRCC WXS tissue_normal CPT0392290006 29573401-69fb-43a0-b47d-d98f21a41542_wxs_gdc_realn.bam 28701279594 BAM harmonized CPTAC3 32cf0421-c323-420d-93ef-60fd37a075cd 981ed2436d5c73655422b089bd50715c {"aliquot_tag": "ALQ_210f45", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3L-01865.WXS.N C3L-01865 CCRCC WXS blood_normal CPT0392340002 CPT0392340002.WholeExome.RP-1303.bam 18017369678 BAM submitted_aligned CPTAC3 73270234-24b0-440b-a3cb-756ee1fc87dc a7d7dfac3515506dbb5321ec1d9b834c {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01865.WXS.N.hg38 C3L-01865 CCRCC WXS blood_normal CPT0392340002 c8f6b46e-e17d-46dc-9b9e-cc78f9700bec_wxs_gdc_realn.bam 24582706361 BAM harmonized CPTAC3 00d892ae-f0a8-49e2-b5a3-c6f70aff6470 b74770d3c3894400e42e78d767ca51e6 {"aliquot_tag": "ALQ_3480dc48", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01865.WXS.T C3L-01865 CCRCC WXS tumor CPT0392260006 CPT0392260006.WholeExome.RP-1303.bam 22560631340 BAM submitted_aligned CPTAC3 9869eb65-8ef4-4a7a-91d9-e20dcec1f998 c5dc910adea038a58e5695d28adb88be {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01865.WXS.T.hg38 C3L-01865 CCRCC WXS tumor CPT0392260006 33f7ef4e-f5f4-487d-8ef7-0262212153cf_wxs_gdc_realn.bam 30956994329 BAM harmonized CPTAC3 3a564ae6-ef6d-4316-9f78-16e77557a03a ed0ae76862c7b3066931903d842108e7 {"aliquot_tag": "ALQ_82719894", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01869.MethArray.Green.A C3L-01869 CCRCC Methylation_Array tissue_normal CPT0104270006 204930630068_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e20d9adb-9271-44da-aa4e-aaae6759d022 f5eeed67cb00f57a59c6297a48c9f89a {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.MethArray.Green.T C3L-01869 CCRCC Methylation_Array tumor CPT0104250009 202234370086_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f4768230-8e2d-4fb1-9e53-2071321b17af 0ebecaffb99dad9b6ba3f8418220f117 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.MethArray.Red.A C3L-01869 CCRCC Methylation_Array tissue_normal CPT0104270006 204930630068_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 8d4433b7-56ee-4c11-8322-b47ebb9d8db2 9cae606ccefee15e096fd9e1f091be28 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.MethArray.Red.T C3L-01869 CCRCC Methylation_Array tumor CPT0104250009 202234370086_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 22baa7c0-a0bb-47ae-97b8-e646105cfb72 9f09fae744d33c3c3133d9194080a49c {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.miRNA-Seq.A.hg38 C3L-01869 CCRCC miRNA-Seq tissue_normal CPT0104270009 a0d3acf0-e9f4-4dc6-8c9d-085616be5bc6_mirnaseq_gdc_realn.bam 249660018 BAM harmonized CPTAC3 e3cda1fb-936b-4f0e-8027-603b4d3613c5 3d6e8330afe757348f4ef6c2466eee05 {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.miRNA-Seq.S35_L007_R1.T C3L-01869 CCRCC miRNA-Seq tumor CPT0104250006 181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L007_R1_001.unaln.bam 242625895 BAM S35_L007_R1 submitted_unaligned CPTAC3 5bcc7f57-ca20-4d18-9b00-85a2260ee225 4142dee5106f6090f182df0544a3fc18 {"aliquot_tag": "ALQ_97b8e4d3", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.miRNA-Seq.S37_L002_R1.A C3L-01869 CCRCC miRNA-Seq tissue_normal CPT0104270009 181119_UNC31-K00269_0165_AH27WCBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 224640156 BAM S37_L002_R1 submitted_unaligned CPTAC3 b58c4bf7-c9bf-4a4f-805d-fa9431ff031f 403c3ae49a29e4cb6f2a1cc5d2a6bc7b {"aliquot_tag": "ALQ_7dc7aa22", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.miRNA-Seq.T.hg38 C3L-01869 CCRCC miRNA-Seq tumor CPT0104250006 73fbeec4-2d33-4c70-8077-81ce50676dcd_mirnaseq_gdc_realn.bam 267057928 BAM harmonized CPTAC3 45acf4bf-8ec8-4180-a5bb-1ea86fd4a3b7 20a8856e1bb0a8c73ac348fded92333b {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.RNA-Seq.chimeric.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.chimeric.gdc_realn.bam 32824012 BAM chimeric harmonized CPTAC3 0f3255c4-eadc-4a8a-ada9-a61bbcd50a5a bf4ba1d01f5dcfa9f0b41dd38c53b793 {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.RNA-Seq.chimeric.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.chimeric.gdc_realn.bam 33364352 BAM chimeric harmonized CPTAC3 0e841d2e-3e6c-4b3e-a5d1-9eddd245e06a 890e3d9998ff5f0be0a018f45b5553cd {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.RNA-Seq.genomic.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.genomic.gdc_realn.bam 10169834126 BAM genomic harmonized CPTAC3 1b06973d-4fe1-478e-a32b-d1f3ba97128d 73b8f918f99020a28b09c80275289f88 {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.RNA-Seq.genomic.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.genomic.gdc_realn.bam 8187868495 BAM genomic harmonized CPTAC3 c1c7ff21-425e-4e92-a906-0722a7d64cc5 659beec4bc0a08d67d4ca6bdc60bca1d {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.RNA-Seq.S5_L008_R1.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R1_001.fastq.gz 4407540594 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 ed8efa89-263f-41cf-ae47-b38d9488d76d 9894820cce6ec97bcc496a4338572e6a {"aliquot_tag": "ALQ_7dc7aa22", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.RNA-Seq.S5_L008_R2.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R2_001.fastq.gz 4732447620 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 5341987b-d880-4778-8c4a-6c74cb1dfaf8 00303a2a5e8395d6ab3991973808744c {"aliquot_tag": "ALQ_7dc7aa22", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.RNA-Seq.S7_L008_R1.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3720636191 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 d36d5d2c-b956-4ffa-b021-18fc146e7a86 9c16c05ae9c3faa4770997dcad085112 {"aliquot_tag": "ALQ_97b8e4d3", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.RNA-Seq.S7_L008_R2.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4160535503 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 88b9a1b5-a8ef-4650-9369-cb6e7a1e32cc d9d0236c47489c172b7143a5535868b1 {"aliquot_tag": "ALQ_97b8e4d3", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.RNA-Seq.transcriptome.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.transcriptome.gdc_realn.bam 11413765443 BAM transcriptome harmonized CPTAC3 405f27d9-b4e8-4fe3-894c-bbdab1d16e60 91cd46d091cf82522f75b7d5eae67ffc {"aliquot_tag": "ALQ_7dc7aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.RNA-Seq.transcriptome.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.transcriptome.gdc_realn.bam 10603146099 BAM transcriptome harmonized CPTAC3 ccdcc420-82e9-498b-a364-7c1160dc5746 956b694d14390d6fec9451f29a68f37b {"aliquot_tag": "ALQ_97b8e4d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.WGS.A C3L-01869 CCRCC WGS tissue_normal CPT0104270006 CPT0104270006.WholeGenome.RP-1303.bam 67473244432 BAM submitted_aligned CPTAC3 1e84ec1b-f768-410a-b7d9-a90607f0245d 670cc125c56c3c4cb0f28ea3c6be34f1 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.WGS.A.hg38 C3L-01869 CCRCC WGS tissue_normal CPT0104270006 a4151231-1f11-41ef-b08f-fd3dff72745f_wgs_gdc_realn.bam 99435484503 BAM harmonized CPTAC3 f1cce340-3372-4bd7-8145-64bf86ece248 f6eca2a15018fdfca601019f0099c17c {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.WGS.N C3L-01869 CCRCC WGS blood_normal CPT0105100002 CPT0105100002.WholeGenome.RP-1303.bam 61375473413 BAM submitted_aligned CPTAC3 007c2364-f04d-460a-baac-76702d6b96cb 5886b28232ddda8c51e554f43145644a {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01869.WGS.N.hg38 C3L-01869 CCRCC WGS blood_normal CPT0105100002 9b332c9c-537c-4302-a00f-d7fa4e3f3dc0_wgs_gdc_realn.bam 90807633512 BAM harmonized CPTAC3 9ae25d19-908b-4c60-a336-e63e6c868a7d f0b1e42061339efec0d5bee166b7c931 {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01869.WGS.T C3L-01869 CCRCC WGS tumor CPT0104250009 CPT0104250009.WholeGenome.RP-1303.bam 71540240227 BAM submitted_aligned CPTAC3 d7620ab3-b24d-4881-82a3-4f26e1c90729 86495c1508c61ce1c2273679cbaae4aa {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.WGS.T.hg38 C3L-01869 CCRCC WGS tumor CPT0104250009 290c6799-4bd2-4db8-b47d-94574d5dfb01_wgs_gdc_realn.bam 106274646689 BAM harmonized CPTAC3 de5683b1-1b2b-41ba-bff5-03d993845d7a a4d31094441c78be675d10efeea28051 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.WXS.A C3L-01869 CCRCC WXS tissue_normal CPT0104270006 CPT0104270006.WholeExome.RP-1303.bam 29673619092 BAM submitted_aligned CPTAC3 64c1177c-6d9a-44e8-b588-8b4b96a74954 b44ef7bb1a0682b57059ea65501bbc91 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.WXS.A.hg38 C3L-01869 CCRCC WXS tissue_normal CPT0104270006 a4151231-1f11-41ef-b08f-fd3dff72745f_wxs_gdc_realn.bam 40684023447 BAM harmonized CPTAC3 6b9492e7-f4d2-4128-bf11-8053780d7879 5ca9247f20211dbb8931ce0cb74b7c63 {"aliquot_tag": "ALQ_ed78b7b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01869.WXS.N C3L-01869 CCRCC WXS blood_normal CPT0105100002 CPT0105100002.WholeExome.RP-1303.bam 30410678533 BAM submitted_aligned CPTAC3 ad71aa26-b9f9-4831-b7b6-25115e8e1f6b 721ad4b6f99b38fb25e721fae4c021a5 {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01869.WXS.N.hg38 C3L-01869 CCRCC WXS blood_normal CPT0105100002 9b332c9c-537c-4302-a00f-d7fa4e3f3dc0_wxs_gdc_realn.bam 42278073368 BAM harmonized CPTAC3 62d4fe45-74cd-4e15-aa3d-edf573ba08cd c7ef73abb7e210ea323bf2fafc37f65a {"aliquot_tag": "ALQ_78d6d6a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01869.WXS.T C3L-01869 CCRCC WXS tumor CPT0104250009 CPT0104250009.WholeExome.RP-1303.bam 39603256600 BAM submitted_aligned CPTAC3 0405dffa-1cc5-4329-a1e9-e699b4aee9e1 900a5c56caaf59423c6a91db36d8d8e7 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01869.WXS.T.hg38 C3L-01869 CCRCC WXS tumor CPT0104250009 290c6799-4bd2-4db8-b47d-94574d5dfb01_wxs_gdc_realn.bam 54177015426 BAM harmonized CPTAC3 83206c18-5d5d-4798-8c47-7b79d5ab60d4 f7d02c1e42e3768f119ca024245d1bf0 {"aliquot_tag": "ALQ_707f942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.MethArray.Green.A C3L-01882 CCRCC Methylation_Array tissue_normal CPT0092740013 204930640082_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a6de06e0-8dc1-4cb9-8ea0-20e0a4f19b46 672efaeda23e3146edb8c6860ca0d783 {"aliquot_tag": "ALQ_f880a34c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.MethArray.Green.T C3L-01882 CCRCC Methylation_Array tumor CPT0092730009 202234370120_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 73900a4a-0407-4876-9f0c-911f4f0adba5 075563f96e2edf5cf6f75cc2ea4b96c2 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.MethArray.Red.A C3L-01882 CCRCC Methylation_Array tissue_normal CPT0092740013 204930640082_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 fd3ddf2e-a25e-4b39-b932-c8678f134138 52709f42e78b0e984a31fe3f970bbd10 {"aliquot_tag": "ALQ_f880a34c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.MethArray.Red.T C3L-01882 CCRCC Methylation_Array tumor CPT0092730009 202234370120_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b6c1c25-f154-4694-8360-a8c70f586941 71f7c33edaab86f1b32fedf1d59c0716 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.miRNA-Seq.A.hg38 C3L-01882 CCRCC miRNA-Seq tissue_normal CPT0092740006 ec31792c-7507-46b9-8aab-b12d52ae34df_mirnaseq_gdc_realn.bam 194311550 BAM harmonized CPTAC3 9152255c-3a9e-4d06-b791-d218b4360b59 778246d42f7e90bf69aba16bfed9d948 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.miRNA-Seq.S15_L007_R1.T C3L-01882 CCRCC miRNA-Seq tumor CPT0092730006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTATAC_S15_L007_R1_001.unaln.bam 260998710 BAM S15_L007_R1 submitted_unaligned CPTAC3 cf9dd235-67af-41c8-b341-19a6cb3d1d91 d38226f2e1c4a67515ca527e4f6ed1f4 {"aliquot_tag": "ALQ_23d1ba92", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.miRNA-Seq.S20_L005_R1.A C3L-01882 CCRCC miRNA-Seq tissue_normal CPT0092740006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGGCC_S20_L005_R1_001.unaln.bam 173281681 BAM S20_L005_R1 submitted_unaligned CPTAC3 d91fbb00-a01e-4ea1-9583-eea7a02a4d8f 6c36b1f767c25dcdf17137761c705797 {"aliquot_tag": "ALQ_91f16682", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.miRNA-Seq.T.hg38 C3L-01882 CCRCC miRNA-Seq tumor CPT0092730006 fc6180e6-500c-4e64-9b04-fe9eb97cfcfc_mirnaseq_gdc_realn.bam 284267447 BAM harmonized CPTAC3 d774bab3-3eb9-42b7-bfd5-0ddab9a570eb 51fcc378654f6d52e53892b9032eaf27 {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.RNA-Seq.chimeric.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.chimeric.gdc_realn.bam 71307096 BAM chimeric harmonized CPTAC3 87d6ce5b-40bd-4222-84d9-450ecd294e53 51bb62368ed18232767356b62cc08a52 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.RNA-Seq.chimeric.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.chimeric.gdc_realn.bam 45389622 BAM chimeric harmonized CPTAC3 ad3a41b5-9ee0-43f2-831d-298614817ff6 cc177e893d686da703e483d83328d8cc {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.RNA-Seq.genomic.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.genomic.gdc_realn.bam 7442170549 BAM genomic harmonized CPTAC3 8a5afd30-60db-49f0-806c-d7d2428c4f25 78435707b98734fb85e60daee9645e30 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.RNA-Seq.genomic.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.genomic.gdc_realn.bam 8657991142 BAM genomic harmonized CPTAC3 acfdb98a-2944-47dd-9667-eee2a172371d 65eda33d34b51320ae64a702c1a6b4ad {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.RNA-Seq.S13_L004_R1.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4021499098 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 0d439a00-5449-44f7-875e-94f947fbd83f 31d702430c220d1ef1aee666f09aa792 {"aliquot_tag": "ALQ_23d1ba92", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.RNA-Seq.S13_L004_R2.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4422279627 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 1a47feb8-dcc3-40b3-8f04-36356277c7c7 dac4e8d4607f79938c21531f3c98b7a1 {"aliquot_tag": "ALQ_23d1ba92", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.RNA-Seq.S1_L001_R1.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R1_001.fastq.gz 3765358803 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 97dc1c10-d86c-44f4-986a-a65ba31e7fb2 399cf004e5280326830f8f015788784e {"aliquot_tag": "ALQ_91f16682", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.RNA-Seq.S1_L001_R2.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R2_001.fastq.gz 3941652019 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 e9485e74-53cb-4c32-a6f2-21ff934c3a10 7ac5025f0e2e30101e71f8464ab34e6f {"aliquot_tag": "ALQ_91f16682", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.RNA-Seq.transcriptome.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.transcriptome.gdc_realn.bam 9740008583 BAM transcriptome harmonized CPTAC3 53a676c8-c4fc-4059-9d20-b5a5c86f5270 36b602a505a8ed53e74c7a4071211a49 {"aliquot_tag": "ALQ_91f16682", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.RNA-Seq.transcriptome.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.transcriptome.gdc_realn.bam 9957814251 BAM transcriptome harmonized CPTAC3 582a2a36-71ec-45cc-88ed-8faa9aa4952b aaae4bd6328eda24c1bef76c620a2f92 {"aliquot_tag": "ALQ_23d1ba92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.WGS.A C3L-01882 CCRCC WGS tissue_normal CPT0092740009 CPT0092740009.WholeGenome.RP-1303.bam 69775688544 BAM submitted_aligned CPTAC3 ad17b3b3-6fa0-4a4f-943c-e5212e739d99 23d33f11fcff1c373518715a1222da90 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.WGS.A.hg38 C3L-01882 CCRCC WGS tissue_normal CPT0092740009 b48fb663-54c2-494d-8864-8c4ab1f84f1f_wgs_gdc_realn.bam 102876480695 BAM harmonized CPTAC3 e301db22-a1cd-450c-b1af-9db77a662b7c 3e89eeec9e8c80f0920d161431d04b78 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.WGS.N C3L-01882 CCRCC WGS blood_normal CPT0093820002 CPT0093820002.WholeGenome.RP-1303.bam 55919177615 BAM submitted_aligned CPTAC3 adc1dd9f-1396-4377-b2d8-a76da4e04cff 87b1fdee27dcf37b33589e649e34aa79 {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01882.WGS.N.hg38 C3L-01882 CCRCC WGS blood_normal CPT0093820002 57cd12ae-3813-4ebc-8afb-7369a9367c0a_wgs_gdc_realn.bam 83253606900 BAM harmonized CPTAC3 8798c0d1-4288-45c5-8b71-b4c9bb22dec2 dc863cf7e674165f34b7414bc7986272 {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01882.WGS.T C3L-01882 CCRCC WGS tumor CPT0092730009 CPT0092730009.WholeGenome.RP-1303.bam 58270353756 BAM submitted_aligned CPTAC3 c4da78ea-d26a-4b0e-8bbf-b6b5f3a3c3ff 179b6405a69c90155f3960eec968f477 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.WGS.T.hg38 C3L-01882 CCRCC WGS tumor CPT0092730009 efba470d-46ea-4677-97ff-8db35dd946d0_wgs_gdc_realn.bam 85950651273 BAM harmonized CPTAC3 6eff53a9-7c67-47a1-acb6-b432d4fdd593 d2e4c48c139a197eb7a32ccc77c02c54 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.WXS.A C3L-01882 CCRCC WXS tissue_normal CPT0092740009 CPT0092740009.WholeExome.RP-1303.bam 36709160220 BAM submitted_aligned CPTAC3 c08107d6-49b3-4a39-97b6-0ceb91a0648f 6c81754bb481bf259e5986ab30b26518 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.WXS.A.hg38 C3L-01882 CCRCC WXS tissue_normal CPT0092740009 b48fb663-54c2-494d-8864-8c4ab1f84f1f_wxs_gdc_realn.bam 49855636385 BAM harmonized CPTAC3 7b418aac-85d2-492b-bbcf-0c5d5f0f97af a5709b20f350f954e21c4d32c5ee5cb3 {"aliquot_tag": "ALQ_14e7b13", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01882.WXS.N C3L-01882 CCRCC WXS blood_normal CPT0093820002 CPT0093820002.WholeExome.RP-1303.bam 33693344338 BAM submitted_aligned CPTAC3 7c1b01c5-90fe-4d91-b069-3f46aca05a6a fb1e16bef3a8e62746984b673655ef08 {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01882.WXS.N.hg38 C3L-01882 CCRCC WXS blood_normal CPT0093820002 57cd12ae-3813-4ebc-8afb-7369a9367c0a_wxs_gdc_realn.bam 44875544218 BAM harmonized CPTAC3 aa8dcb5c-c43c-43b3-a6b5-6e4fda57c932 8c2f936c006afd45a05f2d16dcb0a99f {"aliquot_tag": "ALQ_4efdee5a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01882.WXS.T C3L-01882 CCRCC WXS tumor CPT0092730009 CPT0092730009.WholeExome.RP-1303.bam 35464277386 BAM submitted_aligned CPTAC3 472a62b4-06c8-4d13-aae3-32121d73942b 95d55deaac6d23495eb05ed72aca175f {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01882.WXS.T.hg38 C3L-01882 CCRCC WXS tumor CPT0092730009 efba470d-46ea-4677-97ff-8db35dd946d0_wxs_gdc_realn.bam 48769615200 BAM harmonized CPTAC3 3617bf1b-0525-4015-b764-cc38abe3bc6a 3fb0e89c2acee13327d8eca08c90b6e8 {"aliquot_tag": "ALQ_b36ea703", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.MethArray.Green.A C3L-01884 LSCC Methylation_Array tissue_normal CPT0104380006 203219670122_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3b3b7050-dac2-49bc-8f69-f46fcf3ff0f9 278a5ca3b4ceb70e9c52c743fbc6b9e2 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.MethArray.Green.T C3L-01884 LSCC Methylation_Array tumor CPT0104360011 203219720211_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 73575268-aacc-4d39-94f1-5b5c893f9e89 f79dc5ac83f4d7c98cbf6276ba903277 {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.MethArray.Red.A C3L-01884 LSCC Methylation_Array tissue_normal CPT0104380006 203219670122_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 c96528d5-45a2-445a-be4c-56166ed42320 9a1df26d79a69b56dc29f497d2e32fbb {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.MethArray.Red.T C3L-01884 LSCC Methylation_Array tumor CPT0104360011 203219720211_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 2d991295-bd8c-4c5e-85ef-da593d86009f 03be6e63a78c806b94b9ec4e93908ddc {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.miRNA-Seq.A.hg38 C3L-01884 LSCC miRNA-Seq tissue_normal CPT0104380009 7475035a-b4a1-41ed-aa82-ad4f37ee5da0_mirnaseq_gdc_realn.bam 245225051 BAM harmonized CPTAC3 2ff2b0c2-fe99-42de-9baa-ad7e1b195f35 7a248f3538da5597d4422c941c00c6a5 {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.miRNA-Seq.S1_L001_R1.T C3L-01884 LSCC miRNA-Seq tumor CPT0104360006 181219_UNC31-K00269_0173_BHYGJJBBXX_ATCACG_S1_L001_R1_001.unaln.bam 206913950 BAM S1_L001_R1 submitted_unaligned CPTAC3 12a570ff-5890-496c-babc-1e4d7a985c5b 886ac8bd9fcbd40c01b353f317644d80 {"aliquot_tag": "ALQ_1b444da6", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.miRNA-Seq.S27_L002_R1.A C3L-01884 LSCC miRNA-Seq tissue_normal CPT0104380009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAAAAG_S27_L002_R1_001.unaln.bam 223358140 BAM S27_L002_R1 submitted_unaligned CPTAC3 22f9eda2-2a37-4d95-ac8a-f06783826019 70b502a574478f625695d36e64717d72 {"aliquot_tag": "ALQ_34cbee56", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.miRNA-Seq.T.hg38 C3L-01884 LSCC miRNA-Seq tumor CPT0104360006 eeeff780-3306-4ff3-8420-ff4f4024d228_mirnaseq_gdc_realn.bam 231672049 BAM harmonized CPTAC3 97a3cb6b-faf1-4129-8585-d500708c82a0 f63d0c8dbfe2ef4fe6f87ec8c3654bba {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.RNA-Seq.chimeric.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.chimeric.gdc_realn.bam 19911106 BAM chimeric harmonized CPTAC3 1c3875b4-68f8-47bf-83d5-5216b82577ca 7bf8b846f8e5685663d939084acaaf24 {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.RNA-Seq.chimeric.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.chimeric.gdc_realn.bam 41282836 BAM chimeric harmonized CPTAC3 659701b8-02c9-48f4-a3b7-ec69816a7d04 9c3333d0199534e9e674734151e29a94 {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.RNA-Seq.genomic.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.genomic.gdc_realn.bam 9071450802 BAM genomic harmonized CPTAC3 5343564d-df3d-4f3f-be2c-5d3408a6bc95 081c16fc18c608887a4a7e0855ed1d31 {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.RNA-Seq.genomic.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.genomic.gdc_realn.bam 9335307402 BAM genomic harmonized CPTAC3 dbdf3663-c3ff-4e3e-aefb-8bff5a2a382f 2da5b054cc0cc3dde49f38646947dab1 {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.RNA-Seq.S12_L003_R1.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R1_001.fastq.gz 3235983057 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 afdaedbd-53e9-4e2c-93ea-77935e66b214 05f183e855eeadd4306de17aa60ed4f4 {"aliquot_tag": "ALQ_34cbee56", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.RNA-Seq.S12_L003_R2.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R2_001.fastq.gz 3390937207 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 f626297e-f4a8-4afb-9804-39a21a85a5e6 0fe4653ff9e1b6532701a562f1bc5d13 {"aliquot_tag": "ALQ_34cbee56", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.RNA-Seq.S19_L005_R1.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R1_001.fastq.gz 4138015549 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 c0102389-3ddf-4d9d-bb6b-dd40fbc85ffe ef434050f9edbf27d4a48b2d35a8108b {"aliquot_tag": "ALQ_1b444da6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.RNA-Seq.S19_L005_R2.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R2_001.fastq.gz 4042165006 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 fb0a0c82-2ab6-46ea-bbc0-3841d4997d70 feef7ec8bbcb62b1c3f33cd25c321946 {"aliquot_tag": "ALQ_1b444da6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.RNA-Seq.transcriptome.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.transcriptome.gdc_realn.bam 8684651052 BAM transcriptome harmonized CPTAC3 40c55b74-6d45-4a5c-9de4-059c08085736 86826f118f3193bb6a655ad39e98dd3d {"aliquot_tag": "ALQ_34cbee56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.RNA-Seq.transcriptome.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.transcriptome.gdc_realn.bam 10617597163 BAM transcriptome harmonized CPTAC3 e0506fad-2f0f-460f-a171-1c3cc2c45454 d4097b9022b3fc8b2ca030f163efbecd {"aliquot_tag": "ALQ_1b444da6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.WGS.A C3L-01884 LSCC WGS tissue_normal CPT0104380006 CPT0104380006.WholeGenome.RP-1303.bam 62682836844 BAM submitted_aligned CPTAC3 c0dd0a04-175f-4d3b-a402-715a16e7a913 9362823195e3ed7ef575634ab4bd0430 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.WGS.A.hg38 C3L-01884 LSCC WGS tissue_normal CPT0104380006 7ac07dcd-9f3c-4723-84de-6673ff7d4e05_wgs_gdc_realn.bam 92104161515 BAM harmonized CPTAC3 23c71a11-f980-4b70-8819-dbeb96cc02e7 09c2feb427e9ca511ba79d18f12d4412 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.WGS.N C3L-01884 LSCC WGS blood_normal CPT0105120002 CPT0105120002.WholeGenome.RP-1303.bam 60040420424 BAM submitted_aligned CPTAC3 c3a3e25e-0da6-4af1-8365-898fcf5bce47 059083553962b6a87f514e77048ef74b {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01884.WGS.N.hg38 C3L-01884 LSCC WGS blood_normal CPT0105120002 fb1f04c2-11b4-46b5-9102-75c435c66d06_wgs_gdc_realn.bam 87466633512 BAM harmonized CPTAC3 6f566337-e30d-446d-ab64-36ac1f18d5ec 874d643021131657e327b718076e256c {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01884.WGS.T C3L-01884 LSCC WGS tumor CPT0104360011 CPT0104360011.WholeGenome.RP-1303.bam 60512658939 BAM submitted_aligned CPTAC3 c4a5d353-a5d1-4a6c-a07d-1cf6f6d13a2e 7c57779793a1edd39dcab3722d893cce {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.WGS.T.hg38 C3L-01884 LSCC WGS tumor CPT0104360011 8df61ace-1d12-451f-b246-d43e6e2a026e_wgs_gdc_realn.bam 87501645409 BAM harmonized CPTAC3 e667336b-a6c8-4bbc-864c-7256ba2fdcb4 c5da51aff8b580ee2a2ce78004efe295 {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.WXS.A C3L-01884 LSCC WXS tissue_normal CPT0104380006 CPT0104380006.WholeExome.RP-1303.bam 21565487570 BAM submitted_aligned CPTAC3 c58c1e63-2f3a-4def-b12c-a9498b1c94c6 805b8d6629f14f3f13a130adae063de9 {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.WXS.A.hg38 C3L-01884 LSCC WXS tissue_normal CPT0104380006 7ac07dcd-9f3c-4723-84de-6673ff7d4e05_wxs_gdc_realn.bam 29765627728 BAM harmonized CPTAC3 46092fe0-a33e-4f27-a099-028cd19319e2 91cf1b23a4413ee4a41981162121d51a {"aliquot_tag": "ALQ_a474f3c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01884.WXS.N C3L-01884 LSCC WXS blood_normal CPT0105120002 CPT0105120002.WholeExome.RP-1303.bam 21459893394 BAM submitted_aligned CPTAC3 a0138b2b-afcb-4e51-b50a-7bb8dbb8d7b5 f6cec62b583321d7a41ee19fe8ec2126 {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01884.WXS.N.hg38 C3L-01884 LSCC WXS blood_normal CPT0105120002 fb1f04c2-11b4-46b5-9102-75c435c66d06_wxs_gdc_realn.bam 29548707041 BAM harmonized CPTAC3 50490bfc-a7ba-4b19-b06d-9cd958a4e0e2 487dd17343f02399f7cf354a7b321af9 {"aliquot_tag": "ALQ_21685c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01884.WXS.T C3L-01884 LSCC WXS tumor CPT0104360011 CPT0104360011.WholeExome.RP-1303.bam 23153486816 BAM submitted_aligned CPTAC3 4ff10626-5fe2-497e-8abe-dab2734cf4ec 55ff704e94a011c37b05260b2f346945 {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01884.WXS.T.hg38 C3L-01884 LSCC WXS tumor CPT0104360011 8df61ace-1d12-451f-b246-d43e6e2a026e_wxs_gdc_realn.bam 32129329427 BAM harmonized CPTAC3 7fadc599-50aa-4f5a-84b1-83da53b9fe43 3808dfaf9a8347b509fa9cafd4f0eebf {"aliquot_tag": "ALQ_9c3be944", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.MethArray.Green.A C3L-01885 CCRCC Methylation_Array tissue_normal CPT0092800013 204930630082_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a3e7f623-5fb6-43ce-955b-78c567d0318e 6c7d791e969cf6ac3a604493475af47e {"aliquot_tag": "ALQ_fc56b759", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.MethArray.Green.T C3L-01885 CCRCC Methylation_Array tumor CPT0092790009 202234380102_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3b6d789c-0ad8-4e4b-b230-d52d352de56f c3283c7d1e3177e33995c7c0139274f7 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.MethArray.Red.A C3L-01885 CCRCC Methylation_Array tissue_normal CPT0092800013 204930630082_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 342fc6b3-d049-4243-a41b-4afe3ba89b06 a5dba37e368b301dcb91237e04010c4e {"aliquot_tag": "ALQ_fc56b759", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.MethArray.Red.T C3L-01885 CCRCC Methylation_Array tumor CPT0092790009 202234380102_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 63c47dc7-5bb0-4449-824d-6c8726e19691 a3f8d1425e600d7a8c511a7242668171 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.miRNA-Seq.A.hg38 C3L-01885 CCRCC miRNA-Seq tissue_normal CPT0092800006 11a45a5b-c734-4a2f-a5e4-a44999fc8107_mirnaseq_gdc_realn.bam 168176872 BAM harmonized CPTAC3 ae46c856-582a-4607-8c13-8b8cb449ebc5 8c4ab6e074441136d703e3764cb88cb7 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.miRNA-Seq.S16_L007_R1.T C3L-01885 CCRCC miRNA-Seq tumor CPT0092790006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTCAGA_S16_L007_R1_001.unaln.bam 204752895 BAM S16_L007_R1 submitted_unaligned CPTAC3 907459a1-4b5f-4588-a87f-56982c7e7304 c099f33123a3ff79f45f0a683066a0d3 {"aliquot_tag": "ALQ_6961a233", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.miRNA-Seq.S21_L005_R1.A C3L-01885 CCRCC miRNA-Seq tissue_normal CPT0092800006 181108_UNC31-K00269_0163_BH23TVBBXY_GTTTCG_S21_L005_R1_001.unaln.bam 148049505 BAM S21_L005_R1 submitted_unaligned CPTAC3 d2a6782d-63e9-47ca-b54c-b6da05164896 84f75ff203896f22237c50eb3111db38 {"aliquot_tag": "ALQ_95277297", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.miRNA-Seq.T.hg38 C3L-01885 CCRCC miRNA-Seq tumor CPT0092790006 c5a04b18-0fcf-4eea-82b7-86172fd92e37_mirnaseq_gdc_realn.bam 224463536 BAM harmonized CPTAC3 f01efc28-95d9-4086-8b7e-347f3e2f2990 b5cd7282d814d468eebba122afd53eba {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.RNA-Seq.chimeric.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.chimeric.gdc_realn.bam 60436984 BAM chimeric harmonized CPTAC3 05f9d01f-9b67-4424-b465-8f03519d778a 4269f843954f37c7244c1ab28dd97633 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.RNA-Seq.chimeric.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.chimeric.gdc_realn.bam 50627938 BAM chimeric harmonized CPTAC3 0db3c1f5-94ba-430d-afd2-2639c5a6ff61 7eec9bbcaefdbe1037a96745c04e73ee {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.RNA-Seq.genomic.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.genomic.gdc_realn.bam 7835750260 BAM genomic harmonized CPTAC3 5b0e358f-9ad2-4170-b20a-337b6c8d1b8c f4780cdae650f4332488a11de5798e35 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.RNA-Seq.genomic.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.genomic.gdc_realn.bam 9097580946 BAM genomic harmonized CPTAC3 19cc5d15-ba85-4a25-a0fd-db92dcbbceaa 29a185cda41c5afea50eda2f991de181 {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.RNA-Seq.S16_L004_R1.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4220191441 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 8575eff6-7058-4a99-a065-66fa758b86a4 cba610ccba8a9b1b9149b4137cdde931 {"aliquot_tag": "ALQ_6961a233", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.RNA-Seq.S16_L004_R2.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4439395784 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 c791a7fd-0554-4433-9ad9-9ec6349d8abc 7bd1ccc7e35f9b365a0f5404b2039c4c {"aliquot_tag": "ALQ_6961a233", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.RNA-Seq.S4_L001_R1.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R1_001.fastq.gz 3956939721 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 971ddf62-477c-4dda-8d41-d480ec464f34 5bf53ed716e5461fab0ddde829c90f2b {"aliquot_tag": "ALQ_95277297", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.RNA-Seq.S4_L001_R2.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R2_001.fastq.gz 4129271682 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 4e94b33d-c89e-4bd3-9066-f3cc316401c3 6eeee13d3357fed23c310bbf6ab59a53 {"aliquot_tag": "ALQ_95277297", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.RNA-Seq.transcriptome.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.transcriptome.gdc_realn.bam 9968158425 BAM transcriptome harmonized CPTAC3 6b354bc7-10e7-47b6-8595-7708a1282489 18ce9face4639c0e817fce84c03b3269 {"aliquot_tag": "ALQ_95277297", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.RNA-Seq.transcriptome.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.transcriptome.gdc_realn.bam 10764286878 BAM transcriptome harmonized CPTAC3 16d41a78-5a7b-4888-84dc-83efff69e35e 7e066dfcbc2d9dfa7bad1561029c200a {"aliquot_tag": "ALQ_6961a233", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.WGS.A C3L-01885 CCRCC WGS tissue_normal CPT0092800009 CPT0092800009.WholeGenome.RP-1303.bam 57460839967 BAM submitted_aligned CPTAC3 de478ac0-eb77-430e-9492-82031bbdcf19 1a0c1696b01fca50ee0a2e6825bafe2d {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.WGS.A.hg38 C3L-01885 CCRCC WGS tissue_normal CPT0092800009 6d5aa340-f9fd-4f7e-9a82-0970e7137e07_wgs_gdc_realn.bam 83269364748 BAM harmonized CPTAC3 b796069e-101a-4925-97cb-c0cc114e0818 3103eb157c85ab55fe77179ced537674 {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.WGS.N C3L-01885 CCRCC WGS blood_normal CPT0093830002 CPT0093830002.WholeGenome.RP-1303.bam 55235000334 BAM submitted_aligned CPTAC3 531aa4c5-b87d-41e1-9a07-32db757ea1ee 6197eaa69178ff248ca61db3b2f3c34e {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01885.WGS.N.hg38 C3L-01885 CCRCC WGS blood_normal CPT0093830002 4433997d-8aed-4464-ac3c-2895df2e69b4_wgs_gdc_realn.bam 80335173667 BAM harmonized CPTAC3 e041ad49-5dd4-4378-b7f3-31dffbfe5f0e 9050c3e75520ff279da322550538f497 {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01885.WGS.T C3L-01885 CCRCC WGS tumor CPT0092790009 CPT0092790009.WholeGenome.RP-1303.bam 66987147894 BAM submitted_aligned CPTAC3 1f7ecaae-ba83-45a0-824e-d8e104d63cc3 920989c02cd814ef80248f5261d93f1c {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.WGS.T.hg38 C3L-01885 CCRCC WGS tumor CPT0092790009 26c6c792-50dc-4611-8888-d9baa193ac21_wgs_gdc_realn.bam 98749716402 BAM harmonized CPTAC3 95cc0b3f-00c6-4022-8bf0-ac779b158514 4d4cbf3c86e6cd790b2e0a9b88216a37 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.WXS.A C3L-01885 CCRCC WXS tissue_normal CPT0092800009 CPT0092800009.WholeExome.RP-1303.bam 33114132161 BAM submitted_aligned CPTAC3 3ad095d6-b73e-4d8c-8381-6d1f5b1bc571 2629abf6c94c0d4e762c7f78534f869c {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.WXS.A.hg38 C3L-01885 CCRCC WXS tissue_normal CPT0092800009 6d5aa340-f9fd-4f7e-9a82-0970e7137e07_wxs_gdc_realn.bam 44677632650 BAM harmonized CPTAC3 53229c75-1fe4-49e6-a6e9-76c78f54cb96 985e91aa7c03d9248dda8a3d929d944e {"aliquot_tag": "ALQ_5986f06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01885.WXS.N C3L-01885 CCRCC WXS blood_normal CPT0093830002 CPT0093830002.WholeExome.RP-1303.bam 36363186218 BAM submitted_aligned CPTAC3 bd1f8d22-b08c-48f1-81de-d1e570b2cb39 cbed23fbe994b6460ad84d1142c9d1a3 {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01885.WXS.N.hg38 C3L-01885 CCRCC WXS blood_normal CPT0093830002 4433997d-8aed-4464-ac3c-2895df2e69b4_wxs_gdc_realn.bam 48067773726 BAM harmonized CPTAC3 3a89ac5a-fb2d-4be7-bf48-6af9f0b0e1d5 0af18b44e04bfe66c1434ce607e0f8f2 {"aliquot_tag": "ALQ_739dc7ea", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01885.WXS.T C3L-01885 CCRCC WXS tumor CPT0092790009 CPT0092790009.WholeExome.RP-1303.bam 33405693413 BAM submitted_aligned CPTAC3 e1704ea1-c74b-46ff-a772-9d990983bd50 2c4ccd034070e283104ed437b52586f9 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01885.WXS.T.hg38 C3L-01885 CCRCC WXS tumor CPT0092790009 26c6c792-50dc-4611-8888-d9baa193ac21_wxs_gdc_realn.bam 46155658740 BAM harmonized CPTAC3 3d72262d-e02e-4573-9e5a-d5af15dcbdc4 3d7b904e401b3321c4726cf729d35792 {"aliquot_tag": "ALQ_f9debfa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.MethArray.Green.T C3L-01887 GBM Methylation_Array tumor CPT0104330009 202234370120_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9dca1e69-3fe0-4187-8875-e1c101e6f4d0 4c96771f532677a7e2e88de4c1c85e1e {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.MethArray.Red.T C3L-01887 GBM Methylation_Array tumor CPT0104330009 202234370120_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 23bb3544-d1d8-4d9d-aaeb-c662f35ce180 41122b09792d77e95aab859d08ea42d1 {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.miRNA-Seq.S36_L007_R1.T C3L-01887 GBM miRNA-Seq tumor CPT0104330006 181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L007_R1_001.unaln.bam 201220264 BAM S36_L007_R1 submitted_unaligned CPTAC3 a3d53839-634b-4530-a0aa-3c0e170c6419 e82ecbe61300e6be4784b3aabd98dac6 {"aliquot_tag": "ALQ_d3a4c2d6", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.miRNA-Seq.T.hg38 C3L-01887 GBM miRNA-Seq tumor CPT0104330006 aa8c421b-296d-405e-b0a5-c1d210400066_mirnaseq_gdc_realn.bam 223138231 BAM harmonized CPTAC3 ba0536c7-b28a-4b31-86de-55c9ee4f64bc bb0a22725472c138a9cd295a1c9f5321 {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.RNA-Seq.chimeric.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.chimeric.gdc_realn.bam 34844321 BAM chimeric harmonized CPTAC3 33b7f6c2-4d17-4242-b8a7-bcc791d9f6e3 e78ba6a667f9c60fe3c72deef08f527b {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.RNA-Seq.genomic.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.genomic.gdc_realn.bam 8258643698 BAM genomic harmonized CPTAC3 e4029310-5fd8-41eb-ad59-fd99323be308 af4b38a0515d136c902a7f37382b93f0 {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.RNA-Seq.S3_L007_R1.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R1_001.fastq.gz 3752130477 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 d3c22860-6d90-470c-afbb-b47b75db5f09 8752c59cd37e70e0ba526fdca7e740ba {"aliquot_tag": "ALQ_d3a4c2d6", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.RNA-Seq.S3_L007_R2.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R2_001.fastq.gz 3825927354 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 7d80520b-a0a8-4768-a8c0-2b23b35b0341 373f47bf8be5ffd5887a827e46a764de {"aliquot_tag": "ALQ_d3a4c2d6", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.RNA-Seq.transcriptome.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.transcriptome.gdc_realn.bam 8592920683 BAM transcriptome harmonized CPTAC3 c8b120d3-7e99-4297-9482-38fcbf72c334 769e1b529cdef656a3bea313e54aaf41 {"aliquot_tag": "ALQ_d3a4c2d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.WGS.N C3L-01887 GBM WGS blood_normal CPT0105110002 CPT0105110002.WholeGenome.RP-1303.bam 55815489246 BAM submitted_aligned CPTAC3 5b7726df-2f6c-4db6-a780-cdd80ecce462 a476b0ae3faa7f088a6483fd12029053 {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01887.WGS.N.hg38 C3L-01887 GBM WGS blood_normal CPT0105110002 030a80ff-6a29-4599-b87a-c0811c028057_wgs_gdc_realn.bam 83145630508 BAM harmonized CPTAC3 9f992d65-6bb5-473e-a664-1a817a7eec2e 99dfed0b5847e5fa3099ffe113d0af21 {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01887.WGS.T C3L-01887 GBM WGS tumor CPT0104330009 CPT0104330009.WholeGenome.RP-1303.bam 78887252807 BAM submitted_aligned CPTAC3 ee9f7819-83f0-462f-9ff4-969da6ea9409 a150d19f185c9aad6ffc2c6853db0bcc {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.WGS.T.hg38 C3L-01887 GBM WGS tumor CPT0104330009 e50eb6e0-6790-44d4-a6e8-6f9f4f561ee2_wgs_gdc_realn.bam 116396076820 BAM harmonized CPTAC3 59e0b276-24b6-4bf5-80fc-ff074f3eba57 c2ea3202b9f5d835fda442dc1c35923e {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.WXS.N C3L-01887 GBM WXS blood_normal CPT0105110002 CPT0105110002.WholeExome.RP-1303.bam 30407460834 BAM submitted_aligned CPTAC3 a486528c-3b8e-43a6-b2b0-afb801c4f80b c3a300ccf8f014b80b9059cb03413eea {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01887.WXS.N.hg38 C3L-01887 GBM WXS blood_normal CPT0105110002 030a80ff-6a29-4599-b87a-c0811c028057_wxs_gdc_realn.bam 41928830556 BAM harmonized CPTAC3 da78769f-76f2-4083-bdc1-c51f09fa28ac d507e8e13e1c23e5e325223bdad062ce {"aliquot_tag": "ALQ_45b6ff10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01887.WXS.T C3L-01887 GBM WXS tumor CPT0104330009 CPT0104330009.WholeExome.RP-1303.bam 55248086562 BAM submitted_aligned CPTAC3 16b7f8c5-3428-4d6c-ac01-2f00a50abe76 f8df5d74d3b4428d17753e6ce9e5ef9f {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01887.WXS.T.hg38 C3L-01887 GBM WXS tumor CPT0104330009 e50eb6e0-6790-44d4-a6e8-6f9f4f561ee2_wxs_gdc_realn.bam 76002207187 BAM harmonized CPTAC3 f7ca027d-17a7-4874-98bb-46c97b5abc2d 51157405e5cf1844b4c78723fc3f6572 {"aliquot_tag": "ALQ_431bdf47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.MethArray.Green.A C3L-01889 LUAD Methylation_Array tissue_normal CPT0092250009 203027390034_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0bd13c10-4d4a-424a-b7ec-8ff7723cc25a cd146877888ae8d5d42aba2331982219 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.MethArray.Green.T C3L-01889 LUAD Methylation_Array tumor CPT0092240009 202234360025_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 67d7d90d-379c-4ec6-bec0-fe82b13dcd65 1fdb334356ea2ac291132a23ffd24594 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.MethArray.Red.A C3L-01889 LUAD Methylation_Array tissue_normal CPT0092250009 203027390034_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 98cc833e-cad5-421d-a4f1-adbe87fddddf ff0d9d32e1c426aee5b0b8741989ea6d {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.MethArray.Red.T C3L-01889 LUAD Methylation_Array tumor CPT0092240009 202234360025_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 4db6cf89-f079-4a4d-99c8-bf15cb207647 3519ab37086bec229f48fcebab8fa02c {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.miRNA-Seq.A.hg38 C3L-01889 LUAD miRNA-Seq tissue_normal CPT0092250006 1276ed77-f8f4-4a58-ac02-74b2e081c593_mirnaseq_gdc_realn.bam 229702934 BAM harmonized CPTAC3 3faadb48-311e-4c00-be4d-0c9cef55dd2c 6d5f3f929d4f5f8db44f6c752995e283 {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.miRNA-Seq.S44_L002_R1.A C3L-01889 LUAD miRNA-Seq tissue_normal CPT0092250006 181108_UNC31-K00269_0163_BH23TVBBXY_TATAAT_S44_L002_R1_001.unaln.bam 204008851 BAM S44_L002_R1 submitted_unaligned CPTAC3 a3a6e106-38ae-4832-8f5c-48574f36354f 2d6096d57eb21d0e0f2dac4496f856ec {"aliquot_tag": "ALQ_fc5cde81", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.miRNA-Seq.S8_L007_R1.T C3L-01889 LUAD miRNA-Seq tumor CPT0092240006 180724_UNC32-K00270_0106_BHWK3MBBXX_CACTCA_S8_L007_R1_001.unaln.bam 211382583 BAM S8_L007_R1 submitted_unaligned CPTAC3 fef410d2-9e32-416c-afaf-1b2223478780 e1bdff6068ea754b2aad8a014d807475 {"aliquot_tag": "ALQ_c13cf731", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.miRNA-Seq.T.hg38 C3L-01889 LUAD miRNA-Seq tumor CPT0092240006 1ebfaf10-1622-4d07-8bc5-87b730c272dc_mirnaseq_gdc_realn.bam 227760459 BAM harmonized CPTAC3 bbf74c6b-0a54-42a1-bd66-80e2acba0432 34992fa0433b7e70a0a1a2dd546b5dbe {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.RNA-Seq.chimeric.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.chimeric.gdc_realn.bam 55526078 BAM chimeric harmonized CPTAC3 9e7f971a-ceed-4c1c-9ea3-daec4f723e79 7bf20940a06a046eebe4377001bacfc0 {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.RNA-Seq.chimeric.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.chimeric.gdc_realn.bam 49578563 BAM chimeric harmonized CPTAC3 70d6995b-bedd-4387-a85b-42e0739c414d 27507ebeb2f40b973f42866ee2fa5850 {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.RNA-Seq.genomic.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.genomic.gdc_realn.bam 5295154842 BAM genomic harmonized CPTAC3 1d3a9e67-d8a2-447e-94c1-86a7b5199814 e0285763c58880e7d3619d749fa2d79c {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.RNA-Seq.genomic.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.genomic.gdc_realn.bam 9665624018 BAM genomic harmonized CPTAC3 2b2d6f9d-75b6-43df-9316-20bbf5597167 65101670220ef31204a2a06bb17e3a8d {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.RNA-Seq.S14_L004_R1.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R1_001.fastq.gz 2593602299 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 b451f11f-f844-4236-9ba0-116e8a60eb8e 80cffe4785b536d2d21ea903b57c957f {"aliquot_tag": "ALQ_fc5cde81", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.RNA-Seq.S14_L004_R2.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R2_001.fastq.gz 2825476482 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 682eb12d-02fc-48e0-b83e-fb4dbeac16a6 9e3359cfa3b7a25fd83721ddb6ab3438 {"aliquot_tag": "ALQ_fc5cde81", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.RNA-Seq.S4_L006_R1.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 4426449980 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 82fdf3eb-3eb7-4306-b018-0301e1a5d687 9f2f3d54c949a2671d8a76424d4f79cf {"aliquot_tag": "ALQ_c13cf731", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.RNA-Seq.S4_L006_R2.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 4894117818 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 c247d46d-1ef8-48a2-9564-41c2122d671d c66726f80411991f948d2d17a8481160 {"aliquot_tag": "ALQ_c13cf731", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.RNA-Seq.transcriptome.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.transcriptome.gdc_realn.bam 6657334396 BAM transcriptome harmonized CPTAC3 8e1c5dab-450e-4570-a2ee-18ecf268dea1 fc039e918d42f08836dc51c451676e21 {"aliquot_tag": "ALQ_fc5cde81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.RNA-Seq.transcriptome.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.transcriptome.gdc_realn.bam 10851206630 BAM transcriptome harmonized CPTAC3 bf34f99e-a69b-469a-8e93-ce1e03090e6d 606a2874046b4a2238b8b1c2cfca55a2 {"aliquot_tag": "ALQ_c13cf731", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.WGS.A C3L-01889 LUAD WGS tissue_normal CPT0092250009 CPT0092250009.WholeGenome.RP-1303.bam 61028379434 BAM submitted_aligned CPTAC3 ebb51687-65a8-403a-b0b3-78a47c6386bb 19186c781814180f4765665089450428 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.WGS.A.hg38 C3L-01889 LUAD WGS tissue_normal CPT0092250009 7e191962-9279-4ced-bad0-d13f9562894c_wgs_gdc_realn.bam 89725055194 BAM harmonized CPTAC3 ad21af02-0870-40bb-b0bb-d3ff3919022f 2f47a976c1f2142ea634180ba3dde85e {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.WGS.N C3L-01889 LUAD WGS blood_normal CPT0093760002 CPT0093760002.WholeGenome.RP-1303.bam 76616365139 BAM submitted_aligned CPTAC3 ac570ca9-5f2d-4b60-ac77-c93f909f1c94 ac52472c3e9bae27afa4c20a66e63bfe {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01889.WGS.N.hg38 C3L-01889 LUAD WGS blood_normal CPT0093760002 c2c323c4-a8f3-46e7-8eaf-28154ed2dbd9_wgs_gdc_realn.bam 114785133755 BAM harmonized CPTAC3 d8620204-9330-4def-9095-858dd79f1a8f 6ff1eba2a0cc25cc9d4fec5453d7218a {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01889.WGS.T C3L-01889 LUAD WGS tumor CPT0092240009 CPT0092240009.WholeGenome.RP-1303.bam 62461446369 BAM submitted_aligned CPTAC3 d0833140-79e6-4c3c-85c2-c0a4b8b4bb6f 83d1ed9d82c178288ffd8e116d3e525d {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.WGS.T.hg38 C3L-01889 LUAD WGS tumor CPT0092240009 e370556f-98bc-4182-8a75-9ef866159d07_wgs_gdc_realn.bam 92198541467 BAM harmonized CPTAC3 df83e48f-7069-4f85-a1ea-f4099cdc90c9 01b0b11d1949a0480cad0671b0663fd1 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.WXS.A C3L-01889 LUAD WXS tissue_normal CPT0092250009 CPT0092250009.WholeExome.RP-1303.bam 36469410792 BAM submitted_aligned CPTAC3 757e3556-4620-454d-ad84-543aaeacd5aa a9ee5e81fbba7c465116ce8b9037ead4 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.WXS.A.hg38 C3L-01889 LUAD WXS tissue_normal CPT0092250009 7e191962-9279-4ced-bad0-d13f9562894c_wxs_gdc_realn.bam 48938467272 BAM harmonized CPTAC3 fa5e9e3f-d86f-49df-ad4f-b35bbb76980e 3864178066a42a0cbdf0bd810a6dc286 {"aliquot_tag": "ALQ_6ce3c310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01889.WXS.N C3L-01889 LUAD WXS blood_normal CPT0093760002 CPT0093760002.WholeExome.RP-1303.bam 27702647558 BAM submitted_aligned CPTAC3 ccd4a461-26fc-463c-911e-ecf935332ecd 7c04db5aa57e8f5b48c109f849f76848 {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01889.WXS.N.hg38 C3L-01889 LUAD WXS blood_normal CPT0093760002 c2c323c4-a8f3-46e7-8eaf-28154ed2dbd9_wxs_gdc_realn.bam 37297195375 BAM harmonized CPTAC3 0cfc8eaa-d556-40d2-b131-5ade59b469c8 0ccfbb8682592b2f1c093d666196ce5a {"aliquot_tag": "ALQ_4a2bfa4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01889.WXS.T C3L-01889 LUAD WXS tumor CPT0092240009 CPT0092240009.WholeExome.RP-1303.bam 30787306794 BAM submitted_aligned CPTAC3 185599fb-8254-49a4-b905-d1bfe7f8e817 0185640f80513cb6bf742d56364ac211 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01889.WXS.T.hg38 C3L-01889 LUAD WXS tumor CPT0092240009 e370556f-98bc-4182-8a75-9ef866159d07_wxs_gdc_realn.bam 42591807846 BAM harmonized CPTAC3 88d6418c-49f7-4ff8-a22a-ce1d0a783d68 81dd7faed1bb96a424e9bd808cf55e74 {"aliquot_tag": "ALQ_5183eaa0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.MethArray.Green.A C3L-01890 LUAD Methylation_Array tissue_normal CPT0092940009 203027390049_R02C01_Grn.idat 13676238 IDAT Green NA CPTAC3 1002be1a-2354-4f20-8a79-c1a26f786102 7232826ba996fd16ec3f9e66b0213612 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.MethArray.Red.A C3L-01890 LUAD Methylation_Array tissue_normal CPT0092940009 203027390049_R02C01_Red.idat 13676238 IDAT Red NA CPTAC3 956c15f9-5ac8-4067-b8b6-6d41edc9a71c 3f41b46c9b081715bd53eafa889bde82 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.miRNA-Seq.A.hg38 C3L-01890 LUAD miRNA-Seq tissue_normal CPT0092940006 3d5a36e2-3ce8-4fc6-806f-dec073ccd83d_mirnaseq_gdc_realn.bam 250776939 BAM harmonized CPTAC3 d8c10451-883d-447d-8ab5-aa31ddfca7a9 14d2794105fd7240aa1fce24f418ec84 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.miRNA-Seq.S10_L007_R1.A C3L-01890 LUAD miRNA-Seq tissue_normal CPT0092940006 181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L007_R1_001.unaln.bam 227465907 BAM S10_L007_R1 submitted_unaligned CPTAC3 daed6137-c7ca-4c0c-a5d3-91ee7d77407e 238ccac2680eb8c4690a649190334fcb {"aliquot_tag": "ALQ_abfb07f2", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.miRNA-Seq.S18_L007_R1.T C3L-01890 LUAD miRNA-Seq tumor CPT0092930006 180724_UNC32-K00270_0106_BHWK3MBBXX_TAATCG_S18_L007_R1_001.unaln.bam 230939181 BAM S18_L007_R1 submitted_unaligned CPTAC3 63e7ba48-114f-4de9-96d3-b8c8ebc4b4e3 933f82b765010428c3e0177fd2fe0ab4 {"aliquot_tag": "ALQ_19dbdbe2", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.miRNA-Seq.T.hg38 C3L-01890 LUAD miRNA-Seq tumor CPT0092930006 03d6b2d3-9a7d-4181-ac0b-efa7cc361c93_mirnaseq_gdc_realn.bam 250156689 BAM harmonized CPTAC3 1a252833-2300-4e45-87c8-5d1b7ef8bc9a 054543751cd4bee43c501f5464aa161f {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.RNA-Seq.chimeric.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.chimeric.gdc_realn.bam 92646272 BAM chimeric harmonized CPTAC3 6f91d261-89ec-46de-9cae-60e50d645d0a 38e77f64c115779de030a351059c5475 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.RNA-Seq.chimeric.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.chimeric.gdc_realn.bam 39090557 BAM chimeric harmonized CPTAC3 3a67231f-5a10-4daf-a94e-d4dbce61a40a 32fedb5be6e415320f3f694d89e8a20b {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.RNA-Seq.genomic.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.genomic.gdc_realn.bam 10855732567 BAM genomic harmonized CPTAC3 5038cfb2-bc06-4d21-b31c-43602ebd71c1 d1f3d6580b06907c58c019bebf15ffc3 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.RNA-Seq.genomic.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.genomic.gdc_realn.bam 7575863907 BAM genomic harmonized CPTAC3 74a683e7-c344-4b25-be72-36ee200a7b5d 623f2e2e6ea20ce178e22fd9a402ceec {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.RNA-Seq.S11_L003_R1.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3018396631 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 2544d040-1537-4cb8-a8da-61e9395d927a cdbf156d5c59972ec3d44c05a9942872 {"aliquot_tag": "ALQ_19dbdbe2", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.RNA-Seq.S11_L003_R2.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3102211399 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 b7e27776-3943-4b5f-898c-646a79090347 f2a74b28ac0754c2f1b4647faa8251df {"aliquot_tag": "ALQ_19dbdbe2", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.RNA-Seq.S13_L004_R1.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R1_001.fastq.gz 4705946368 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 351b2fd3-ccff-4eff-8739-78092fee6813 2cd21dd60598aa5bd19bfc688e87abc8 {"aliquot_tag": "ALQ_abfb07f2", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.RNA-Seq.S13_L004_R2.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R2_001.fastq.gz 5205121434 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 a366c7b2-49ec-434d-9877-0dacdd9d19f7 eae830c709b45615f3339ba5f3a06d12 {"aliquot_tag": "ALQ_abfb07f2", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.RNA-Seq.transcriptome.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.transcriptome.gdc_realn.bam 10847448525 BAM transcriptome harmonized CPTAC3 4bc48cd2-6761-4b44-a8db-17d3f041c11a 57363c9939bf56b746c364eaafcddf09 {"aliquot_tag": "ALQ_abfb07f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.RNA-Seq.transcriptome.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.transcriptome.gdc_realn.bam 6389278993 BAM transcriptome harmonized CPTAC3 54c44c5f-5174-40de-8237-0c58daa18ddb 9d0c1e0d07ee63cffb22ca683dc2251a {"aliquot_tag": "ALQ_19dbdbe2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.WGS.A C3L-01890 LUAD WGS tissue_normal CPT0092940009 CPT0092940009.WholeGenome.RP-1303.bam 51906006480 BAM submitted_aligned CPTAC3 88d4a2be-69ec-4bfa-a48e-d94afd394cf8 1f687922e0a7c508adc30135e68b89cd {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.WGS.A.hg38 C3L-01890 LUAD WGS tissue_normal CPT0092940009 3cb61a96-02d8-427f-98b7-e02ccd6b15c6_wgs_gdc_realn.bam 75953152085 BAM harmonized CPTAC3 9214b79c-6b23-44be-ac92-9cdc13f22bcb 2c14136d80e8d39562087a2e78683c3c {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.WGS.N C3L-01890 LUAD WGS blood_normal CPT0093850002 CPT0093850002.WholeGenome.RP-1303.bam 62077605321 BAM submitted_aligned CPTAC3 b4112a26-7dcb-48ed-93da-b13a16b2817f 5a50e02b9ce3e39ea4452a4d5027e8bf {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01890.WGS.N.hg38 C3L-01890 LUAD WGS blood_normal CPT0093850002 aac3f36d-d012-4c6e-b245-62831ab85bcb_wgs_gdc_realn.bam 91322732909 BAM harmonized CPTAC3 95dc5389-e394-4d6a-a698-3a6deac14ac1 4c4bca067add17b74ab22300982d3dff {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01890.WGS.T C3L-01890 LUAD WGS tumor CPT0092930008 CPT0092930008.WholeGenome.RP-1303.bam 68952334953 BAM submitted_aligned CPTAC3 f761657b-5463-4563-ac5c-71527fc1ce04 8a6a9a17ee666ce46189555d25bf6fcd {"aliquot_tag": "ALQ_fe63f6e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.WGS.T.hg38 C3L-01890 LUAD WGS tumor CPT0092930008 aa0f3c6a-a011-424c-a1e1-4d1ae831708a_wgs_gdc_realn.bam 99889462884 BAM harmonized CPTAC3 61096ec5-cd2b-460a-bed8-f4dc97df91d5 dda11da65707c8c30b7d11e97344f7a6 {"aliquot_tag": "ALQ_fe63f6e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01890.WXS.A C3L-01890 LUAD WXS tissue_normal CPT0092940009 CPT0092940009.WholeExome.RP-1303.bam 30761907963 BAM submitted_aligned CPTAC3 09b8b545-e4e8-4c6e-bc91-ab4582f6486a e2af9063edfce52fffef29f01913d488 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.WXS.A.hg38 C3L-01890 LUAD WXS tissue_normal CPT0092940009 3cb61a96-02d8-427f-98b7-e02ccd6b15c6_wxs_gdc_realn.bam 42255875881 BAM harmonized CPTAC3 42372ca8-ef72-4b16-841b-3eebce0523c3 9e1843219bec05bd0a5cb58e67516498 {"aliquot_tag": "ALQ_3b441a63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01890.WXS.N C3L-01890 LUAD WXS blood_normal CPT0093850002 CPT0093850002.WholeExome.RP-1303.bam 32848814340 BAM submitted_aligned CPTAC3 043821c6-aa8b-4c1d-845c-b8f990330d21 34bd3e7c7fa0f8a81a62e3c8dd2a3b38 {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01890.WXS.N.hg38 C3L-01890 LUAD WXS blood_normal CPT0093850002 aac3f36d-d012-4c6e-b245-62831ab85bcb_wxs_gdc_realn.bam 44814605858 BAM harmonized CPTAC3 79626fd7-3aa0-4a5d-924e-3a40123766b3 69946a0acae7f8237d99ea6c159115ff {"aliquot_tag": "ALQ_fcdd324a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01913.MethArray.Green.T C3L-01913 UCEC Methylation_Array tumor CPT0092690009 202234380058_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 db7cc806-9a36-4f2b-b29f-7ac462e65b9c 4f96c4013bd64eb8becd41d259a2d2a4 {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.MethArray.Red.T C3L-01913 UCEC Methylation_Array tumor CPT0092690009 202234380058_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e74878ce-4ce8-4615-9b1e-313117a458f7 df9a43e8bad7ed12b5e9f3fb85b31a0f {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.miRNA-Seq.S14_L007_R1.T C3L-01913 UCEC miRNA-Seq tumor CPT0092690006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTAGCT_S14_L007_R1_001.unaln.bam 231214334 BAM S14_L007_R1 submitted_unaligned CPTAC3 8e105962-6212-430c-bb5b-a95b3e2257ce 54f8d6ef8971d4e2c1a7ad2de2175600 {"aliquot_tag": "ALQ_a23d7196", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.miRNA-Seq.T.hg38 C3L-01913 UCEC miRNA-Seq tumor CPT0092690006 c1f2d755-1831-41fc-adcf-d9b578376cca_mirnaseq_gdc_realn.bam 248897404 BAM harmonized CPTAC3 2a35f378-03be-4621-a9e8-47efd7292f3f b60cc714b102bdd9b3c4143bdc15940c {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.chimeric.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.chimeric.gdc_realn.bam 59515210 BAM chimeric harmonized CPTAC3 8c99de2d-07b7-43f0-9466-824e59fcc106 b85e799344b28d56025c07d0351818cb {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.chimeric.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.chimeric.gdc_realn.bam 163055348 BAM chimeric harmonized CPTAC3 a95dd0d9-bcb6-442e-b41e-1c3facce340f bbfc9ecbc944b45f31f795e8a9d595d5 {"aliquot_tag": "ALQ_13bd3f8b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.genomic.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.genomic.gdc_realn.bam 9453913298 BAM genomic harmonized CPTAC3 839e2de6-e1ba-497f-83b9-e244231370d7 e5816f51c07a2ea8edfc228568e96528 {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.genomic.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.genomic.gdc_realn.bam 7803910955 BAM genomic harmonized CPTAC3 9115a129-a44b-4e5a-b7a1-42ab0f8ded86 4ba58ed82c4c8df7fdbe567e38bc08fe {"aliquot_tag": "ALQ_13bd3f8b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.S14_L004_R1.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4601248333 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 70e30d18-6c3f-4549-b219-5b0e97be092c 869c7634d9254cb68190cce263b39932 {"aliquot_tag": "ALQ_a23d7196", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.S14_L004_R2.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 5047006926 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 8df62ec5-cdc4-40d0-8b10-161dd4b1efb2 cc2081d3c861e2a1c532c5477076f67e {"aliquot_tag": "ALQ_a23d7196", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.S67_R1.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R1_001.fastq.gz 4350941540 FASTQ S67_R1 submitted_unaligned CPTAC3 bd2fe1cb-dbc2-4498-a69e-fe07a9f191f1 86eb626e5e17b342c1b8b78f12710555 {"aliquot_tag": "ALQ_13bd3f8b", "sample": "S67", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.S67_R2.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R2_001.fastq.gz 4480725024 FASTQ S67_R2 submitted_unaligned CPTAC3 0213df11-ce3d-41e5-aa14-b5654801f0a7 95477b65b6d1cbd7e59b78222cbc5e80 {"aliquot_tag": "ALQ_13bd3f8b", "sample": "S67", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.transcriptome.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.transcriptome.gdc_realn.bam 11496008526 BAM transcriptome harmonized CPTAC3 d57ecc7e-a94d-43ee-87f1-b732d3178c8c b8ac8ecf1b397a8192b47a746b98e0c3 {"aliquot_tag": "ALQ_a23d7196", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.RNA-Seq.transcriptome.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.transcriptome.gdc_realn.bam 3846723872 BAM transcriptome harmonized CPTAC3 bcf719bd-bf97-49cf-b714-02aacd63959d b22c6042d44d68bc23895f4d99948136 {"aliquot_tag": "ALQ_13bd3f8b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.WGS.N C3L-01913 UCEC WGS blood_normal CPT0093810002 CPT0093810002.WholeGenome.RP-1303.bam 62236482235 BAM submitted_aligned CPTAC3 854e3fe8-3cc8-40fd-a73e-f565dae25be6 78ecee61d995d88609332e857dcc44be {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01913.WGS.N.hg38 C3L-01913 UCEC WGS blood_normal CPT0093810002 4801be53-7ce4-439a-8b46-0bfed31c515d_wgs_gdc_realn.bam 90000306221 BAM harmonized CPTAC3 191d2fa1-f55d-42e0-bb15-2849f3b31368 50c627ab36cf21c2c9d620cbb80df1c9 {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01913.WGS.T C3L-01913 UCEC WGS tumor CPT0092690009 CPT0092690009.WholeGenome.RP-1303.bam 61328268688 BAM submitted_aligned CPTAC3 63b6033e-9ca5-4e1d-a38e-f09f5ed8ba01 ccb4a6682afbc24442d4d700baf907fb {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.WGS.T.hg38 C3L-01913 UCEC WGS tumor CPT0092690009 7513413b-82b1-40da-b449-fd38788a2ab4_wgs_gdc_realn.bam 89756660322 BAM harmonized CPTAC3 7adb2d81-bcc8-45d5-96cb-aab61b369f61 3f5ffe5e7e1b417c3eaa31bc696764ae {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.WXS.N C3L-01913 UCEC WXS blood_normal CPT0093810002 CPT0093810002.WholeExome.RP-1303.bam 27719214392 BAM submitted_aligned CPTAC3 dd6f2082-f428-4329-901b-e4728ad62480 c307b45c5c268bd83fe5086e64f16ace {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01913.WXS.N.hg38 C3L-01913 UCEC WXS blood_normal CPT0093810002 4801be53-7ce4-439a-8b46-0bfed31c515d_wxs_gdc_realn.bam 37801903274 BAM harmonized CPTAC3 3d24c2e4-e333-44f8-ba03-82c17755ee54 92787da5f00ffba5b57bb912291466fe {"aliquot_tag": "ALQ_95d948a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01913.WXS.T C3L-01913 UCEC WXS tumor CPT0092690009 CPT0092690009.WholeExome.RP-1303.bam 48206997086 BAM submitted_aligned CPTAC3 499bf192-5955-4cb3-9f05-640e9f656df0 604e894f2fc15a9e6205aa7f87827d25 {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01913.WXS.T.hg38 C3L-01913 UCEC WXS tumor CPT0092690009 7513413b-82b1-40da-b449-fd38788a2ab4_wxs_gdc_realn.bam 65710695751 BAM harmonized CPTAC3 a1eed798-0d7a-4bbd-b5b7-c331152cfba7 c1cb28d5d20b227baf912a7889df778e {"aliquot_tag": "ALQ_32826c07", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01924.MethArray.Green.A C3L-01924 LUAD Methylation_Array tissue_normal CPT0114690009 203027390120_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1f98cade-fee7-43b1-b319-236bb8050d7d 2e740ce347700d9b5dc2aa1045f997ad {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.MethArray.Green.T C3L-01924 LUAD Methylation_Array tumor CPT0114660010 202234370091_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 09524f6f-44d9-4e5b-af2f-1ad058186b78 14d0f01084991b41de77ab7832ea6f14 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.MethArray.Red.A C3L-01924 LUAD Methylation_Array tissue_normal CPT0114690009 203027390120_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 7c1f7c6e-ebcb-4245-9cda-3463fab0dca4 d9bfab30da715ba42599ba2a442797a2 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.MethArray.Red.T C3L-01924 LUAD Methylation_Array tumor CPT0114660010 202234370091_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 0b72db74-0f84-4ea4-8d62-558a93da521c 62e62c18d693e9b2df074e2bd775724e {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.miRNA-Seq.A.hg38 C3L-01924 LUAD miRNA-Seq tissue_normal CPT0114690006 5829500d-3be7-4dc3-a300-4fbdf0d513e0_mirnaseq_gdc_realn.bam 260442739 BAM harmonized CPTAC3 e1763d26-101b-4c30-b94b-e4c45ec6fcba 54b7d2dc3b478a8cb62cb588dce05d78 {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.miRNA-Seq.S44_L003_R1.T C3L-01924 LUAD miRNA-Seq tumor CPT0114660007 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L003_R1_001.unaln.bam 184333576 BAM S44_L003_R1 submitted_unaligned CPTAC3 595e1d46-46b6-4b33-ba34-2ce155351d09 d06ef6b3e8fec83e67ed15333320f8c6 {"aliquot_tag": "ALQ_f024ec1d", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.miRNA-Seq.S48_L006_R1.A C3L-01924 LUAD miRNA-Seq tissue_normal CPT0114690006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L006_R1_001.unaln.bam 234681361 BAM S48_L006_R1 submitted_unaligned CPTAC3 348869eb-4fd9-40ad-8b36-515230d07ad9 efb073880e952aec005e4a0952f53a14 {"aliquot_tag": "ALQ_5734b5a", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.miRNA-Seq.T.hg38 C3L-01924 LUAD miRNA-Seq tumor CPT0114660007 1796a55a-9b75-4a91-9a9d-e7477fd6bec7_mirnaseq_gdc_realn.bam 198915394 BAM harmonized CPTAC3 136d153c-b01c-4e8b-a7ce-88089157062e 61f29a75709c26af705ad9612f343b01 {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.RNA-Seq.chimeric.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.chimeric.gdc_realn.bam 142559969 BAM chimeric harmonized CPTAC3 92d17ce8-95d1-434d-8f6e-4f73c12e8eec 866adfd379c44bd8894737a75495ad31 {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.RNA-Seq.chimeric.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.chimeric.gdc_realn.bam 79399414 BAM chimeric harmonized CPTAC3 155e1674-741c-41ce-b48f-6939615b6b94 928a1a1a94a42403a4e9d96274c22a35 {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.RNA-Seq.genomic.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.genomic.gdc_realn.bam 8413520089 BAM genomic harmonized CPTAC3 a4f764e0-433b-41fd-ba71-69794e1e043d a9b6b4231fa6fccc9b3870a6582c7940 {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.RNA-Seq.genomic.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.genomic.gdc_realn.bam 9538924291 BAM genomic harmonized CPTAC3 3c6a5d52-3f28-4b1c-aeaf-fa1b2c045c4c 9f4ce346fb4817b425ad555c319c2a28 {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.RNA-Seq.S19_L005_R1.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 3944862404 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 f3202189-6188-4c2c-b30b-220fb8f873a4 b43861f14178bf3ac1b3c89982c19326 {"aliquot_tag": "ALQ_f024ec1d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.RNA-Seq.S19_L005_R2.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 4424759148 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 42468ec2-89bb-4647-8314-6eb5b72c5dcf 116bfd3908240d30f9e66ffbbc96d3b7 {"aliquot_tag": "ALQ_f024ec1d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.RNA-Seq.S9_L003_R1.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R1_001.fastq.gz 3994393963 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 47ebb3cc-4874-43d7-9b49-d50364c8f922 d1a393a9a8e1e9c364e37d11a7cf4bcc {"aliquot_tag": "ALQ_5734b5a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.RNA-Seq.S9_L003_R2.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R2_001.fastq.gz 4364633215 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 c7c5c55f-b29e-4831-8e07-8474fd44a183 1e2cb1dcec4337de9d4b1f95e2e95bfc {"aliquot_tag": "ALQ_5734b5a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.RNA-Seq.transcriptome.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.transcriptome.gdc_realn.bam 10646268618 BAM transcriptome harmonized CPTAC3 5c3952b3-5264-4d88-abe0-1533130f61a3 bdc748c92aa105f6b6c3046a62c4b64d {"aliquot_tag": "ALQ_5734b5a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.RNA-Seq.transcriptome.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.transcriptome.gdc_realn.bam 10236643935 BAM transcriptome harmonized CPTAC3 14848eaa-c911-4baf-8db8-b67adc810aae 5911948072817af288626e99d49e2cfe {"aliquot_tag": "ALQ_f024ec1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.WGS.A C3L-01924 LUAD WGS tissue_normal CPT0114690009 CPT0114690009.WholeGenome.RP-1303.bam 57910130683 BAM submitted_aligned CPTAC3 498223a9-65b4-477f-95d5-69bccc62285d 9d905a6e92feda1d84bd49cca36dded3 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.WGS.A.hg38 C3L-01924 LUAD WGS tissue_normal CPT0114690009 6181eeb8-6921-444e-94a1-4da0098707a5_wgs_gdc_realn.bam 86292484787 BAM harmonized CPTAC3 87ee1a55-5be9-4225-b678-17ab3e0a8dcf be8b3c04ae38b790dccbd9e4dbd12027 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.WGS.N C3L-01924 LUAD WGS blood_normal CPT0116660002 CPT0116660002.WholeGenome.RP-1303.bam 58979459237 BAM submitted_aligned CPTAC3 f2111973-d0c2-46dd-952a-8e4caba7ea3d 159affc40d123c61bbfe2100037f7417 {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01924.WGS.N.hg38 C3L-01924 LUAD WGS blood_normal CPT0116660002 d7d49f54-2e47-4f16-a3ee-48c85116d4ca_wgs_gdc_realn.bam 86087021911 BAM harmonized CPTAC3 0298bc8f-6f52-40d5-bbd1-73c180fb6c47 93849891685345e9eee33eb95eb1b36d {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01924.WGS.T C3L-01924 LUAD WGS tumor CPT0114660010 CPT0114660010.WholeGenome.RP-1303.bam 62409666015 BAM submitted_aligned CPTAC3 9c4ea902-9b89-4359-a08e-76d20863da2f 28c8bc4e73bea940a5032186c2af8c25 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.WGS.T.hg38 C3L-01924 LUAD WGS tumor CPT0114660010 6ff5d3f7-220b-41fc-9a8b-71827ce106df_wgs_gdc_realn.bam 90279306194 BAM harmonized CPTAC3 573e2944-f036-408f-acb7-2cbb0af8b135 0c3e46519d0d48a23a39deba717e5e4c {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.WXS.A C3L-01924 LUAD WXS tissue_normal CPT0114690009 CPT0114690009.WholeExome.RP-1303.bam 29316634742 BAM submitted_aligned CPTAC3 035496a1-538e-4d52-94af-cfa04ee56958 0d32c4ee24007845b453c62b4930ef66 {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.WXS.A.hg38 C3L-01924 LUAD WXS tissue_normal CPT0114690009 6181eeb8-6921-444e-94a1-4da0098707a5_wxs_gdc_realn.bam 40173227093 BAM harmonized CPTAC3 fe136d24-0401-4307-bc8f-10f69de15286 f5349162db1eca3849dd5ac2ea0aedac {"aliquot_tag": "ALQ_95cc56cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01924.WXS.N C3L-01924 LUAD WXS blood_normal CPT0116660002 CPT0116660002.WholeExome.RP-1303.bam 36295245306 BAM submitted_aligned CPTAC3 94983a82-c77a-4958-b3af-54761109262b 86252e48251e2d0e001fa287b8a6e67f {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01924.WXS.N.hg38 C3L-01924 LUAD WXS blood_normal CPT0116660002 d7d49f54-2e47-4f16-a3ee-48c85116d4ca_wxs_gdc_realn.bam 48511497104 BAM harmonized CPTAC3 c923a07f-99a1-41fc-8981-dd61f7965f1a 005d34649d455b029b9520dd53a2c936 {"aliquot_tag": "ALQ_17d109bb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01924.WXS.T C3L-01924 LUAD WXS tumor CPT0114660010 CPT0114660010.WholeExome.RP-1303.bam 29126868563 BAM submitted_aligned CPTAC3 c2f846fe-8368-4169-a5c9-1242598cee24 0f3ffc82acb5b88d3e6d452f3ef3b372 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01924.WXS.T.hg38 C3L-01924 LUAD WXS tumor CPT0114660010 6ff5d3f7-220b-41fc-9a8b-71827ce106df_wxs_gdc_realn.bam 39612866816 BAM harmonized CPTAC3 b626240c-4a92-4c1d-ae72-391ed665a517 ccbfd051ceac4e25f413d8c514084e86 {"aliquot_tag": "ALQ_775b48ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.MethArray.Green.T C3L-01925 UCEC Methylation_Array tumor CPT0113690009 203027390073_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3653f810-7c65-4137-b569-e0eb57fa057a 2a942cf7acaa1f7b0cdfbfc9f376b60f {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.MethArray.Red.T C3L-01925 UCEC Methylation_Array tumor CPT0113690009 203027390073_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 f6e60b09-b5b0-4788-bcb7-3c8b371b8f52 fc2193cb87a96194482115de8b93db7d {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.miRNA-Seq.S37_L004_R1.T C3L-01925 UCEC miRNA-Seq tumor CPT0113690006 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L004_R1_001.unaln.bam 202959171 BAM S37_L004_R1 submitted_unaligned CPTAC3 53d2cd8d-025a-4aeb-bc20-29bd7ef4a5c6 31d5f181957a71900a9784fbf5497316 {"aliquot_tag": "ALQ_c0d475d4", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.miRNA-Seq.T.hg38 C3L-01925 UCEC miRNA-Seq tumor CPT0113690006 972e8bb4-5fec-49fd-bd6d-6b093a08df46_mirnaseq_gdc_realn.bam 225094293 BAM harmonized CPTAC3 3b339dc9-3143-47bb-ba30-818ed527d98b 0178952e6d0261260067afe6df4cb6d3 {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.chimeric.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.chimeric.gdc_realn.bam 48830455 BAM chimeric harmonized CPTAC3 d6361c40-2b19-4b6b-982d-bb7059e8ebe2 9ee49b4bc66393cfb8e8d38b26f938af {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.chimeric.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.chimeric.gdc_realn.bam 175052870 BAM chimeric harmonized CPTAC3 52e794ea-f43a-4b0f-9852-91873a884fb4 3218cb527ce52be136e5214f25077a85 {"aliquot_tag": "ALQ_910d52fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.genomic.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.genomic.gdc_realn.bam 8757986045 BAM genomic harmonized CPTAC3 f9ab070f-0beb-411c-ae08-fe5248d6561f 822a050770e6b7c5ba56c5c4c47e1e63 {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.genomic.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.genomic.gdc_realn.bam 7956687894 BAM genomic harmonized CPTAC3 46706ee6-9035-4e09-adf8-4f883ccb4f70 8db5c47fe72c4604d81d3e7e238dc9c6 {"aliquot_tag": "ALQ_910d52fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.S23_L006_R1.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3863935837 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 49190371-ec2a-420f-a804-0931a346d206 945e2f9be6d5f170d69db929e6086bfd {"aliquot_tag": "ALQ_c0d475d4", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.S23_L006_R2.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4262715660 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 c8dfbe14-a49c-4838-95c7-c9b9ed81633a fae4ed3c02b64640231cd03f7dcc312f {"aliquot_tag": "ALQ_c0d475d4", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.S68_R1.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R1_001.fastq.gz 4891982146 FASTQ S68_R1 submitted_unaligned CPTAC3 ab378c65-4d59-4ed0-82ac-73788de1353f db42dfa5823b255b8538d1734700e74b {"aliquot_tag": "ALQ_910d52fe", "sample": "S68", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.S68_R2.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R2_001.fastq.gz 5017968745 FASTQ S68_R2 submitted_unaligned CPTAC3 94266dde-525d-4c68-b8a1-366c98c8e111 ecfa7fa003e15f31c1345614075f2721 {"aliquot_tag": "ALQ_910d52fe", "sample": "S68", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.transcriptome.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.transcriptome.gdc_realn.bam 9065647464 BAM transcriptome harmonized CPTAC3 c1410f03-1891-482d-a942-73e9d6e53e3e f200aabb4a82792cd87c01cf7a3b1262 {"aliquot_tag": "ALQ_c0d475d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.RNA-Seq.transcriptome.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.transcriptome.gdc_realn.bam 3997983105 BAM transcriptome harmonized CPTAC3 b251751e-165d-4af3-bcd9-73eb541c9846 da3d5c006eba49bc25c542591f1d909c {"aliquot_tag": "ALQ_910d52fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.WGS.N C3L-01925 UCEC WGS blood_normal CPT0114410002 CPT0114410002.WholeGenome.RP-1303.bam 57704354295 BAM submitted_aligned CPTAC3 7a638708-ec54-448f-b793-18ff020a1f05 b242adf3001144e732d81e6c9abb5842 {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01925.WGS.N.hg38 C3L-01925 UCEC WGS blood_normal CPT0114410002 d354fd4a-1f75-4174-b0c9-10575ed3a4d5_wgs_gdc_realn.bam 83787352428 BAM harmonized CPTAC3 580c3cce-5125-41fd-933b-52017d1279e0 2f0da2b71921150ac5863fc13419055b {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01925.WGS.T C3L-01925 UCEC WGS tumor CPT0113690009 CPT0113690009.WholeGenome.RP-1303.bam 58877766330 BAM submitted_aligned CPTAC3 09eb163d-b367-4bee-8e85-fd7eb92e0af7 04bd955d6f46cd141d2acc2379d057c5 {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.WGS.T.hg38 C3L-01925 UCEC WGS tumor CPT0113690009 45a3f0fe-0662-4dfd-9f5e-f5b62faef683_wgs_gdc_realn.bam 87035481832 BAM harmonized CPTAC3 70147939-557e-46d7-852f-38e1c1e7be31 74e33f1fab9a5b616dd572a0d7b9dd5f {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.WXS.N C3L-01925 UCEC WXS blood_normal CPT0114410002 CPT0114410002.WholeExome.RP-1303.bam 34625203015 BAM submitted_aligned CPTAC3 38c5bbb9-3142-418c-ad0c-d74c8f2e217a 3cbef20b5c3df860b68a89462041bb76 {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01925.WXS.N.hg38 C3L-01925 UCEC WXS blood_normal CPT0114410002 d354fd4a-1f75-4174-b0c9-10575ed3a4d5_wxs_gdc_realn.bam 47051357678 BAM harmonized CPTAC3 ffc37f27-76c2-4df1-aaad-ed6f7d8e8ffb f795268cc58302eb9f0d7a71640d03b7 {"aliquot_tag": "ALQ_7fa66589", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01925.WXS.T C3L-01925 UCEC WXS tumor CPT0113690009 CPT0113690009.WholeExome.RP-1303.bam 24839083207 BAM submitted_aligned CPTAC3 3d47985c-6c06-4b8b-ba91-cbe7815892a8 77189b687068cbc75909bae522e6ac70 {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01925.WXS.T.hg38 C3L-01925 UCEC WXS tumor CPT0113690009 45a3f0fe-0662-4dfd-9f5e-f5b62faef683_wxs_gdc_realn.bam 34356391143 BAM harmonized CPTAC3 dcefad95-d4c9-4736-b67e-7270c9e16673 d10e153a523be655b456dd1ac1a1a91b {"aliquot_tag": "ALQ_506b6845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.MethArray.Green.T C3L-01929 CCRCC Methylation_Array tumor CPT0093020009 202234370086_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 da75b476-f87b-45f7-adc4-2ba0729666d8 e15fbc0eb31409ff1529e0c4fda770cf {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.MethArray.Red.T C3L-01929 CCRCC Methylation_Array tumor CPT0093020009 202234370086_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 14df697c-7230-4b7e-8218-e8882c66f20a 4790d209db2fe76110a5b913b1097c59 {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.miRNA-Seq.S20_L007_R1.T C3L-01929 CCRCC miRNA-Seq tumor CPT0093020006 180724_UNC32-K00270_0106_BHWK3MBBXX_TATAAT_S20_L007_R1_001.unaln.bam 300858536 BAM S20_L007_R1 submitted_unaligned CPTAC3 a7003ec8-f78b-4d06-9397-98fa109cbb70 91e415e008abc0d6973402e007f7f8f8 {"aliquot_tag": "ALQ_a5c3a82e", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.miRNA-Seq.T.hg38 C3L-01929 CCRCC miRNA-Seq tumor CPT0093020006 b2e497fa-18f1-4e2c-921b-75347f8dc258_mirnaseq_gdc_realn.bam 321524603 BAM harmonized CPTAC3 7a434fbf-c7f8-490b-8f0f-db3c382d25c6 92c363478f93948a4705117718523d2c {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.RNA-Seq.chimeric.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.chimeric.gdc_realn.bam 46870592 BAM chimeric harmonized CPTAC3 a11ee217-73fb-4ce6-a5e6-012b38ab6bb7 5a900bd9674c8b2d0b4d377ec83f1631 {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.RNA-Seq.genomic.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.genomic.gdc_realn.bam 9094283421 BAM genomic harmonized CPTAC3 236e4d69-c52a-423f-94ac-ee2178131c8a a88c4ed2c6bae61319076b98c15dca84 {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.RNA-Seq.S12_L003_R1.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 4262434556 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 425cb3c9-c46d-4679-bffd-1112c63e7d35 401009e81efe18e0db8070c3e81d7274 {"aliquot_tag": "ALQ_a5c3a82e", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.RNA-Seq.S12_L003_R2.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4752782066 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 0d41aaec-d8a2-48d3-983f-58be18dc53dd fc175ae6f60314b52a289bdf8f4cc2f7 {"aliquot_tag": "ALQ_a5c3a82e", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.RNA-Seq.transcriptome.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.transcriptome.gdc_realn.bam 11962873368 BAM transcriptome harmonized CPTAC3 c51a6746-7683-4f3d-8f5f-55c599ae0379 941b1d84becbb2e78a2d4cd7157f67a6 {"aliquot_tag": "ALQ_a5c3a82e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.WGS.N C3L-01929 CCRCC WGS blood_normal CPT0092450002 CPT0092450002.WholeGenome.RP-1303.bam 67886167849 BAM submitted_aligned CPTAC3 d4c45b6e-1006-4ed0-b075-c3585b19c960 529cf52992b28f4c0d7a2f390c279d18 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01929.WGS.N.hg38 C3L-01929 CCRCC WGS blood_normal CPT0092450002 ca6848da-0250-4723-987d-9c5ecd76b3dd_wgs_gdc_realn.bam 99318565296 BAM harmonized CPTAC3 9454f0db-f2e5-4396-82a5-18e8e6e37aa1 067d89a67018ddf5888ff6eebec325a7 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01929.WGS.T C3L-01929 CCRCC WGS tumor CPT0093020009 CPT0093020009.WholeGenome.RP-1303.bam 67894329757 BAM submitted_aligned CPTAC3 0100d080-7b6c-4c76-8738-b3e7e3c11956 adff5524f377abe32e484b7927823b0b {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.WGS.T.hg38 C3L-01929 CCRCC WGS tumor CPT0093020009 4804b657-2af6-424f-a834-9a1f96b91ac6_wgs_gdc_realn.bam 99873185052 BAM harmonized CPTAC3 219385da-fb51-4f43-812f-b5bffdc1298b b2dd3a1cdd7db3bb1d08b38a7280a271 {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.WXS.N C3L-01929 CCRCC WXS blood_normal CPT0092450002 CPT0092450002.WholeExome.RP-1303.bam 38069337126 BAM submitted_aligned CPTAC3 bc3633da-2c19-469c-8a74-330f854f35e6 d3071ef99740a1fb712a87559a30dc77 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01929.WXS.N.hg38 C3L-01929 CCRCC WXS blood_normal CPT0092450002 ca6848da-0250-4723-987d-9c5ecd76b3dd_wxs_gdc_realn.bam 50849395912 BAM harmonized CPTAC3 5daa1c3f-9f66-4450-a73f-638f1944e667 d47be072ca7f81ac9e2030d2f88d76f2 {"aliquot_tag": "ALQ_2d68f985", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01929.WXS.T C3L-01929 CCRCC WXS tumor CPT0093020009 CPT0093020009.WholeExome.RP-1303.bam 38984431848 BAM submitted_aligned CPTAC3 da6b6bee-c1c0-4503-ab4c-0113ded61b06 f9670a96773c0cc16b3db32f3fb2751c {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01929.WXS.T.hg38 C3L-01929 CCRCC WXS tumor CPT0093020009 4804b657-2af6-424f-a834-9a1f96b91ac6_wxs_gdc_realn.bam 52906726695 BAM harmonized CPTAC3 e60c90ca-2366-49ef-9924-8d8a02fff0fd 5113b37114bbbdeec2345268cf301cf9 {"aliquot_tag": "ALQ_357cb5bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.MethArray.Green.T C3L-01951 CCRCC Methylation_Array tumor CPT0092680009 202234380051_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 57d23684-46c5-46e4-bdd9-7ae1f4ec617b 6f1f7802f7b7090c67446e48047f9bed {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.MethArray.Red.T C3L-01951 CCRCC Methylation_Array tumor CPT0092680009 202234380051_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 0a87bfde-b667-4aef-a18a-a58d1a849707 c4f6e8d09c00f5f4bb528efbed42cd6d {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.miRNA-Seq.S19_L007_R1.T C3L-01951 CCRCC miRNA-Seq tumor CPT0092680006 180724_UNC32-K00270_0106_BHWK3MBBXX_TACAGC_S19_L007_R1_001.unaln.bam 240017858 BAM S19_L007_R1 submitted_unaligned CPTAC3 666291bb-adce-4738-91c7-b82ee7ebc250 cdd723918ef410b868fd85a01c55e1cb {"aliquot_tag": "ALQ_9f5d5826", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.miRNA-Seq.T.hg38 C3L-01951 CCRCC miRNA-Seq tumor CPT0092680006 7959928f-94f4-4777-9047-b79b60fa5c31_mirnaseq_gdc_realn.bam 264062183 BAM harmonized CPTAC3 5151591e-c4b2-4ba4-b4d4-c24a18eb1449 2dc89b79272966bb857be7936be2c003 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.RNA-Seq.chimeric.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.chimeric.gdc_realn.bam 53657126 BAM chimeric harmonized CPTAC3 20cfd6ad-e0df-4ac7-bdb1-fe732ad938f3 42e741bd0666c200c8829367c08d43d4 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.RNA-Seq.genomic.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.genomic.gdc_realn.bam 9932412366 BAM genomic harmonized CPTAC3 a8fd2ef9-68b7-4d6f-bded-8dc75f77d1eb 93019ce09ea3315f8c1d8ee83bd3fc33 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.RNA-Seq.S10_L003_R1.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4841246897 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 abfe4735-2c06-4aae-bde6-b1e11bfdcb76 a15e34a299d1eb9754c938544df0e2c4 {"aliquot_tag": "ALQ_9f5d5826", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.RNA-Seq.S10_L003_R2.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 5357433664 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 8b135a11-9e76-4ae6-bc74-6709f1a08a78 1cf931f2b869eaddf85323a8b91dfbe1 {"aliquot_tag": "ALQ_9f5d5826", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.RNA-Seq.transcriptome.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.transcriptome.gdc_realn.bam 11966698842 BAM transcriptome harmonized CPTAC3 1855acac-a809-437d-a8a0-12a9e60b28b9 245382c8fed70d285eebd8a6d5606c29 {"aliquot_tag": "ALQ_9f5d5826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.WGS.N C3L-01951 CCRCC WGS blood_normal CPT0092080002 CPT0092080002.WholeGenome.RP-1303.bam 60990182128 BAM submitted_aligned CPTAC3 9711e3ee-860b-4047-85ee-8f78aa9cb392 068beb58a53c68f3ebc1d330de070b6b {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01951.WGS.N.hg38 C3L-01951 CCRCC WGS blood_normal CPT0092080002 8a1463a4-c097-44d5-90f9-12a9de165331_wgs_gdc_realn.bam 89111027479 BAM harmonized CPTAC3 8be84ec2-69b2-4790-b39b-c12bd66be181 4f27f0452e91c2c7caf537e503970b0a {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01951.WGS.T C3L-01951 CCRCC WGS tumor CPT0092680009 CPT0092680009.WholeGenome.RP-1303.bam 62525625914 BAM submitted_aligned CPTAC3 d57e7fcf-16e8-41ac-a089-367c886db14c 7c50b3f6de02260a093bbd68756ea9a3 {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.WGS.T.hg38 C3L-01951 CCRCC WGS tumor CPT0092680009 d573dd3c-2423-44de-a547-d6695634a28d_wgs_gdc_realn.bam 91420814247 BAM harmonized CPTAC3 b25c1abb-6812-4b71-89ff-bfb299abf74f 22e3c2f98e6a19c18679e0c5376a71f5 {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.WXS.N C3L-01951 CCRCC WXS blood_normal CPT0092080002 CPT0092080002.WholeExome.RP-1303.bam 24503399630 BAM submitted_aligned CPTAC3 c1a62e2d-1e4f-474e-b8d4-c7cf148d4c78 ecbe3e15269f7485b7a059dc9d102f90 {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01951.WXS.N.hg38 C3L-01951 CCRCC WXS blood_normal CPT0092080002 8a1463a4-c097-44d5-90f9-12a9de165331_wxs_gdc_realn.bam 33905559933 BAM harmonized CPTAC3 5de50014-322e-4443-a2b4-a35c13f7d07b b52b288e73191bd7d461052530d5330e {"aliquot_tag": "ALQ_4e697f22", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01951.WXS.T C3L-01951 CCRCC WXS tumor CPT0092680009 CPT0092680009.WholeExome.RP-1303.bam 38620542818 BAM submitted_aligned CPTAC3 a3ea9cdf-db2d-43e1-be6e-b3287b614ec8 8adba934a6aaa662e8c105aa9965b57f {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01951.WXS.T.hg38 C3L-01951 CCRCC WXS tumor CPT0092680009 d573dd3c-2423-44de-a547-d6695634a28d_wxs_gdc_realn.bam 52353981097 BAM harmonized CPTAC3 a288c0c0-4928-491c-a473-f5ad4c302779 1c37e8a7aba3234adaff76125f5119bd {"aliquot_tag": "ALQ_fe245b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.MethArray.Green.T C3L-01952 CCRCC Methylation_Array tumor CPT0093070009 202234380054_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c978540f-11a8-4ff6-82d2-e56274fbe61f 6001b6a13a77a779644f2ed5cea08d6d {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.MethArray.Red.T C3L-01952 CCRCC Methylation_Array tumor CPT0093070009 202234380054_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 3e40f216-e93e-4ea2-8548-7cba6396d781 84e9ff23a82cfbad98cbbec428b75ce4 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.miRNA-Seq.S14_L003_R1.T C3L-01952 CCRCC miRNA-Seq tumor CPT0093070006 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L003_R1_001.unaln.bam 197421541 BAM S14_L003_R1 submitted_unaligned CPTAC3 4d364adb-11d1-4aaa-864d-000bb20b57a4 80c2d14cf4d5bbc00a7f31815c7c011a {"aliquot_tag": "ALQ_6d23275e", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.miRNA-Seq.T.hg38 C3L-01952 CCRCC miRNA-Seq tumor CPT0093070006 6f623f89-6cfd-45f4-9e4c-228af8eaa4d3_mirnaseq_gdc_realn.bam 222580225 BAM harmonized CPTAC3 b5bc07b2-2d4e-4576-9972-3ebb62fd592a 717db379792924137241674429852d55 {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.RNA-Seq.chimeric.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.chimeric.gdc_realn.bam 57314023 BAM chimeric harmonized CPTAC3 226a01ae-c415-47cc-9dd5-49e125592e6d 3700ec2f8f90804867abf6e06555aac1 {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.RNA-Seq.genomic.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.genomic.gdc_realn.bam 9945047073 BAM genomic harmonized CPTAC3 43cef7f6-da31-432f-9bb3-d5a2e44b906d 4fd99a8f04c9782883ed300d95df0bc3 {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.RNA-Seq.S4_L006_R1.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R1_001.fastq.gz 4909231779 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 5ef0270e-595b-4181-94d2-c72989ab949b 2434d48463804ed70bd60d478779de65 {"aliquot_tag": "ALQ_6d23275e", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.RNA-Seq.S4_L006_R2.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R2_001.fastq.gz 5276145027 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 849811f6-e2aa-4a1d-9965-f3e31f03ee6a a9ed5ff43bb228dab1d75f4220818d05 {"aliquot_tag": "ALQ_6d23275e", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.RNA-Seq.transcriptome.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.transcriptome.gdc_realn.bam 12766365814 BAM transcriptome harmonized CPTAC3 d4198276-1145-41b6-a3e7-bf22c730ce36 5c388b3b4be4b0da2b971556db7052de {"aliquot_tag": "ALQ_6d23275e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.WGS.N C3L-01952 CCRCC WGS blood_normal CPT0092580002 CPT0092580002.WholeGenome.RP-1303.bam 57783014868 BAM submitted_aligned CPTAC3 ec0377f4-5eb5-46b9-a2aa-385d5b40fd0e 5523a2529ad14620fe3f30a46efdce37 {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01952.WGS.N.hg38 C3L-01952 CCRCC WGS blood_normal CPT0092580002 1f0715e3-3fde-4e61-b248-4c7dcb86886d_wgs_gdc_realn.bam 86444512659 BAM harmonized CPTAC3 bcd8f8b3-ee1f-4cf9-88d7-090b2f390918 9f9ae4bc92eee80e6680a47bd03ed1cf {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01952.WGS.T C3L-01952 CCRCC WGS tumor CPT0093070009 CPT0093070009.WholeGenome.RP-1303.bam 59887820196 BAM submitted_aligned CPTAC3 5f7f0673-6e13-48f4-b044-e80b7247c12b afc3d2cacf17cfe625bf32c3905966a4 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.WGS.T.hg38 C3L-01952 CCRCC WGS tumor CPT0093070009 2b640f2a-eb23-4508-8593-b4d76c73913b_wgs_gdc_realn.bam 88685411162 BAM harmonized CPTAC3 d01beacc-7cf3-4842-b022-2bd110be5620 de46f98fc05406dc174237f4a139481a {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.WXS.N C3L-01952 CCRCC WXS blood_normal CPT0092580002 CPT0092580002.WholeExome.RP-1303.bam 31073872171 BAM submitted_aligned CPTAC3 ad5ff4fc-557d-4d5a-ae20-59f12148864d 108c5c7265855cd6ebf3dcb9a6892787 {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01952.WXS.N.hg38 C3L-01952 CCRCC WXS blood_normal CPT0092580002 1f0715e3-3fde-4e61-b248-4c7dcb86886d_wxs_gdc_realn.bam 43287658280 BAM harmonized CPTAC3 0c74a6b2-f9f1-4641-9c8c-dbad0f39ba14 1a942d70534983af5c77efed80642769 {"aliquot_tag": "ALQ_1ea4ee91", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01952.WXS.T C3L-01952 CCRCC WXS tumor CPT0093070009 CPT0093070009.WholeExome.RP-1303.bam 43009120927 BAM submitted_aligned CPTAC3 5405428d-730c-4738-8858-b5217a9f781a fbcad3a633bf2dc7f5f3b367971e8301 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01952.WXS.T.hg38 C3L-01952 CCRCC WXS tumor CPT0093070009 2b640f2a-eb23-4508-8593-b4d76c73913b_wxs_gdc_realn.bam 58512009824 BAM harmonized CPTAC3 3d413a47-b5a9-4091-bace-ce74e528532c a93f5b6cccbe5c937b600242503443a3 {"aliquot_tag": "ALQ_fd9c3acf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01953.MethArray.Green.T C3L-01953 CCRCC Methylation_Array tumor CPT0389860006 205555380161_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 2a05a35c-6466-4b83-913a-9d1f02a67848 1f465a42268cab3b3b896d5e4a35128f {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.MethArray.Red.T C3L-01953 CCRCC Methylation_Array tumor CPT0389860006 205555380161_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 da5a0e20-9508-4c2c-a7b1-c48051d91cfa 6f26a4b030db2b47564ba2bbfe97df70 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.miRNA-Seq.S23_L002_R1.T C3L-01953 CCRCC miRNA-Seq tumor CPT0389860009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAGGCG_S23_L002_R1_001.unaln.bam 256144230 BAM S23_L002_R1 submitted_unaligned CPTAC3 f792aa6c-6350-4ec2-89b6-2502b2a307d5 485450dd3ee89c1661575ff34bdf6953 {"aliquot_tag": "ALQ_7df8f207", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.miRNA-Seq.T.hg38 C3L-01953 CCRCC miRNA-Seq tumor CPT0389860009 60364281-c8a1-4ea1-9fa0-d0b864c35ab2_mirnaseq_gdc_realn.bam 283007837 BAM harmonized CPTAC3 0c378294-0b05-4ecc-a186-8a560ca5e0e0 b8290527af5def33baffdcafafe4fe0c {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.RNA-Seq.chimeric.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.chimeric.gdc_realn.bam 304469429 BAM chimeric harmonized CPTAC3 2ea7da44-eff0-49c0-b16f-329c2402a394 3930ac3d0e347697027a445434052105 {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.RNA-Seq.genomic.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.genomic.gdc_realn.bam 8744668672 BAM genomic harmonized CPTAC3 33b2846b-8899-4abc-b8f3-b5e5d46a40b7 737837aee72e92b8b38d5c340d5284b6 {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.RNA-Seq.S4_L001_R1.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R1_001.fastq.gz 4046894466 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 c6c161f7-0723-4a50-ae25-7fd30c277842 19e9f466177c3efc508f7f87c2984892 {"aliquot_tag": "ALQ_7df8f207", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.RNA-Seq.S4_L001_R2.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R2_001.fastq.gz 4687825641 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 df994857-d183-4299-8120-f79f0f49d65b 41ee0b0038c1bee5dae4785153c7880a {"aliquot_tag": "ALQ_7df8f207", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.RNA-Seq.transcriptome.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.transcriptome.gdc_realn.bam 12282526354 BAM transcriptome harmonized CPTAC3 37f421a0-a5c1-465d-ad1a-faab75e940d3 df705c33a8314e024578b3050d9969ef {"aliquot_tag": "ALQ_7df8f207", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.scRNA-Seq.S3_L003_R1.T C3L-01953 CCRCC scRNA-Seq tumor CPT0389860004 20220127_WUSTL_TWFU-CPT0389860004-Y1N1Z1_1Bn1_1_AAGATTGGAT+AGCGGGATTT_S3_L003_R1_001.fastq.gz 7360193697 FASTQ S3_L003_R1 submitted_unaligned CPTAC3 922c40e4-ec33-448f-809f-1ca0014ed955 d8d2d87458c989a9bcdc758afd682e26 {"aliquot_tag": "ALQ_3498eba", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.scRNA-Seq.S3_L003_R2.T C3L-01953 CCRCC scRNA-Seq tumor CPT0389860004 20220127_WUSTL_TWFU-CPT0389860004-Y1N1Z1_1Bn1_1_AAGATTGGAT+AGCGGGATTT_S3_L003_R2_001.fastq.gz 25768579998 FASTQ S3_L003_R2 submitted_unaligned CPTAC3 15d0b6de-9266-4945-a12b-792e1f1a1324 96b85fed617368af64446fbc1e28ca4a {"aliquot_tag": "ALQ_3498eba", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.WGS.N C3L-01953 CCRCC WGS blood_normal CPT0389890002 CPT0389890002.WholeGenome.RP-2158.bam 24317435491 BAM submitted_aligned CPTAC3 55eab932-5116-4113-b926-0efad3c05d3b 02d455349dc8c7aeb14ef8aee8f7413d {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01953.WGS.N.hg38 C3L-01953 CCRCC WGS blood_normal CPT0389890002 3cb5aaf6-03d9-4719-abde-4112902ed551_wgs_gdc_realn.bam 74701967279 BAM harmonized CPTAC3 4911fc07-7453-4114-9e31-8f1dbd44e011 692eb62bade20d5934b5c85e61a1a5ee {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01953.WGS.T C3L-01953 CCRCC WGS tumor CPT0389860006 CPT0389860006.WholeGenome.RP-2158.bam 26360311209 BAM submitted_aligned CPTAC3 4498028a-bc11-4d4b-8946-2dae351f9681 39e9a204114370658c170d2030cb6e23 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.WGS.T.hg38 C3L-01953 CCRCC WGS tumor CPT0389860006 71dffcf8-bc0e-41c8-b340-0b3ecb450063_wgs_gdc_realn.bam 80714218630 BAM harmonized CPTAC3 8c0b42ed-ed2e-42c4-97b2-b5483caf96aa 237be51ca5a54a7532f006ed3aec1f96 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.WXS.N C3L-01953 CCRCC WXS blood_normal CPT0389890002 CPT0389890002.WholeExome.RP-1303.bam 22501581223 BAM submitted_aligned CPTAC3 a70298c3-bc36-44c7-810d-aa929f1df0c9 9ac57fda136b647906ad78eb666bc778 {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01953.WXS.N.hg38 C3L-01953 CCRCC WXS blood_normal CPT0389890002 3cb5aaf6-03d9-4719-abde-4112902ed551_wxs_gdc_realn.bam 30922073614 BAM harmonized CPTAC3 771a2d1e-15f6-4eb0-9625-2d5fc985a518 e861fa107a1522aff07eac2329f14034 {"aliquot_tag": "ALQ_687abc5e", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01953.WXS.T C3L-01953 CCRCC WXS tumor CPT0389860006 CPT0389860006.WholeExome.RP-1303.bam 22690457134 BAM submitted_aligned CPTAC3 c37d63b7-910d-45ca-87bf-31a8de545288 4f5c21473960a0a438250fa63c4def71 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01953.WXS.T.hg38 C3L-01953 CCRCC WXS tumor CPT0389860006 71dffcf8-bc0e-41c8-b340-0b3ecb450063_wxs_gdc_realn.bam 31455006235 BAM harmonized CPTAC3 2eff19f5-fb55-486a-b882-78868c62c88c e4ac5c77847c2e7b5f74320b75d458f9 {"aliquot_tag": "ALQ_ed47ef96", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01954.MethArray.Green.T C3L-01954 CCRCC Methylation_Array tumor CPT0100590009 202234380094_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b98c16ac-0776-45fe-a685-f0fd8d31acbd 88704ad21ecd4402f5f7e800945caeb2 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.MethArray.Red.T C3L-01954 CCRCC Methylation_Array tumor CPT0100590009 202234380094_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 fd3081ef-f85f-4a0b-a041-41beb60988c5 1543d9abb8f4bbcfecf7fff604880d88 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.miRNA-Seq.S14_L006_R1.T C3L-01954 CCRCC miRNA-Seq tumor CPT0100590006 180828_UNC32-K00270_0112_AHWTLNBBXX_CGTACG_S14_L006_R1_001.unaln.bam 200639592 BAM S14_L006_R1 submitted_unaligned CPTAC3 3aa306ca-80e6-46f7-b94d-d857144bc047 cb5b65338452b878eece8db4f16b7e13 {"aliquot_tag": "ALQ_bb021d79", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.miRNA-Seq.T.hg38 C3L-01954 CCRCC miRNA-Seq tumor CPT0100590006 5cbfd8b9-a462-4b06-b992-aa1e6e06d1b4_mirnaseq_gdc_realn.bam 228179884 BAM harmonized CPTAC3 301c14bb-2d45-429d-bb93-c0780171e3e8 55fd44f4bf696bc38a04257f07b35b9b {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.RNA-Seq.chimeric.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.chimeric.gdc_realn.bam 41246956 BAM chimeric harmonized CPTAC3 052933d7-49c0-47a2-9624-fa65e5f45692 0c458f42fa963c7c8bbb9f18ae58098f {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.RNA-Seq.genomic.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.genomic.gdc_realn.bam 9639771665 BAM genomic harmonized CPTAC3 180be7f0-49e5-4a4f-8b9b-257a326ddf58 9d89fa401f43162ec143661fca01933f {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.RNA-Seq.S17_L005_R1.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R1_001.fastq.gz 4305539235 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 a075910a-daa2-4e5c-b542-062ee3c4eb3e cb66ad943636d2f4cc3facea5c13a7f3 {"aliquot_tag": "ALQ_bb021d79", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.RNA-Seq.S17_L005_R2.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R2_001.fastq.gz 4731489217 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 1b07305e-9e61-48dc-bca3-bb14bda008b4 5b4c9f23f031a93f4db5daf8302ae062 {"aliquot_tag": "ALQ_bb021d79", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.RNA-Seq.transcriptome.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.transcriptome.gdc_realn.bam 11182131610 BAM transcriptome harmonized CPTAC3 a15fe031-54c3-43dd-b8be-5e735092a246 d2a5e4b017e48cbb0d5ce08715f66e55 {"aliquot_tag": "ALQ_bb021d79", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.WGS.N C3L-01954 CCRCC WGS blood_normal CPT0101990002 CPT0101990002.WholeGenome.RP-1303.bam 59783206052 BAM submitted_aligned CPTAC3 21f6b6db-086f-4084-8f81-b190aa6fec25 3ea138fe035c58891592c3f007c2194a {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01954.WGS.N.hg38 C3L-01954 CCRCC WGS blood_normal CPT0101990002 70e1b9a5-a805-4e1b-920b-f770dbfa406f_wgs_gdc_realn.bam 88173375107 BAM harmonized CPTAC3 c8c18a96-89ad-4f46-924c-ef352ed45dbc 3316530c8a6e57dcf32c674a134e17f2 {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01954.WGS.T C3L-01954 CCRCC WGS tumor CPT0100590009 CPT0100590009.WholeGenome.RP-1303.bam 60629016496 BAM submitted_aligned CPTAC3 3003724c-137d-4762-b7dd-5e0cd39956c7 eda81227978ebcab8e43abfef85e0111 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.WGS.T.hg38 C3L-01954 CCRCC WGS tumor CPT0100590009 87bfb077-3dcd-4d12-ab63-68aec924ee5e_wgs_gdc_realn.bam 89494675722 BAM harmonized CPTAC3 58c061c5-bfd6-4c75-9a52-c51b3d514343 72b99f65b057a00db30243a886c0c093 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.WXS.N C3L-01954 CCRCC WXS blood_normal CPT0101990002 CPT0101990002.WholeExome.RP-1303.bam 30763940607 BAM submitted_aligned CPTAC3 6a6de6d3-9728-47c4-abdf-925252741668 3c1ea07e42452f95bed677c0577c1fe7 {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01954.WXS.N.hg38 C3L-01954 CCRCC WXS blood_normal CPT0101990002 70e1b9a5-a805-4e1b-920b-f770dbfa406f_wxs_gdc_realn.bam 42121746883 BAM harmonized CPTAC3 37e28a21-c26c-40e8-a686-d360af87b69f 3a0d8f7439c452ad9984333dfc1f3475 {"aliquot_tag": "ALQ_6dda12af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01954.WXS.T C3L-01954 CCRCC WXS tumor CPT0100590009 CPT0100590009.WholeExome.RP-1303.bam 48784482855 BAM submitted_aligned CPTAC3 1d5012f4-05aa-4bce-a9fb-6a6b0a3ee22f 9d8dd76247f51ad59b6cb7b80809af6a {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01954.WXS.T.hg38 C3L-01954 CCRCC WXS tumor CPT0100590009 87bfb077-3dcd-4d12-ab63-68aec924ee5e_wxs_gdc_realn.bam 68034931222 BAM harmonized CPTAC3 9696cdca-4cf4-48fd-840e-e8d94ab23047 33404d8f05769f68d20f76a7e2db8556 {"aliquot_tag": "ALQ_2bbd00e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01955.MethArray.Green.T C3L-01955 CCRCC Methylation_Array tumor CPT0389780006 205549610122_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 f4bab191-c7d3-414c-96bd-4d15a2855e02 4320e6ea495099a75a84904036d42aca {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.MethArray.Red.T C3L-01955 CCRCC Methylation_Array tumor CPT0389780006 205549610122_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 eb45e4c6-ec4c-4ec2-81e2-3598659940ca 29cf7bce451a79f4d6e62b313f83daed {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.miRNA-Seq.A.hg38 C3L-01955 CCRCC miRNA-Seq tissue_normal CPT0389790006 69120396-3160-4423-a01e-78816e1e54c6_mirnaseq_gdc_realn.bam 260186350 BAM harmonized CPTAC3 c80e2aff-16a5-4317-8888-14119d244303 2bee806e989fc7f31d9e587f4f6779ba {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01955.miRNA-Seq.S21_L002_R1.T C3L-01955 CCRCC miRNA-Seq tumor CPT0389780009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACGAT_S21_L002_R1_001.unaln.bam 350267548 BAM S21_L002_R1 submitted_unaligned CPTAC3 91fa9483-6b94-440c-b359-d1b9fff67fb0 e11276d538f55fe0b7671d0bf15ea6c5 {"aliquot_tag": "ALQ_339efeb3", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.miRNA-Seq.S22_L002_R1.A C3L-01955 CCRCC miRNA-Seq tissue_normal CPT0389790006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACTCA_S22_L002_R1_001.unaln.bam 240548230 BAM S22_L002_R1 submitted_unaligned CPTAC3 f54e4800-5397-48a3-9385-b9e862b6b2f4 6d270cfb27046cb80fccaf670b10535f {"aliquot_tag": "ALQ_9e41ca92", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01955.miRNA-Seq.T.hg38 C3L-01955 CCRCC miRNA-Seq tumor CPT0389780009 2c4adf73-52b1-49e4-85bf-bb5dd4fe926e_mirnaseq_gdc_realn.bam 368055796 BAM harmonized CPTAC3 71285416-c4d2-4391-ad03-cf18bbf14633 6839e1c865705b787c71021f8d1f67bf {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.RNA-Seq.chimeric.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.chimeric.gdc_realn.bam 360701574 BAM chimeric harmonized CPTAC3 4d478c73-6512-49b3-bf4a-e7262b723d96 a01a2d77fc2428574f8f347e0363a3d9 {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01955.RNA-Seq.chimeric.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.chimeric.gdc_realn.bam 316056498 BAM chimeric harmonized CPTAC3 9535c628-859c-4dbc-a73e-c4adfd57917c a8e90349718af9e85d953873606c44c4 {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.RNA-Seq.genomic.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.genomic.gdc_realn.bam 9395468569 BAM genomic harmonized CPTAC3 0bff5c0b-6db6-4c40-9ce7-1824bbc39bda c4750c2b4de32359aea30c2d64b8284b {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01955.RNA-Seq.genomic.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.genomic.gdc_realn.bam 7708085510 BAM genomic harmonized CPTAC3 9f7624ac-3af5-424d-818f-911a2f252807 2606b1fee1796e2a36a7f4b72ec4dfcb {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.RNA-Seq.S5_L002_R1.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4386644868 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 f0027f05-021f-4d6d-9cd9-cab0b7c749be 11054fbb78120adcc2d406a63dd4a1a5 {"aliquot_tag": "ALQ_9e41ca92", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01955.RNA-Seq.S5_L002_R2.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4865849887 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 002dd006-1655-4802-9903-4b3ac4867ab7 de18cf0dc168d671ae30253c8ef02642 {"aliquot_tag": "ALQ_9e41ca92", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01955.RNA-Seq.S7_L002_R1.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3596194595 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 7bc34a21-c808-4b08-a241-bb54f02949e7 4e60c5b554a7bec630e8e9b8ac9ea062 {"aliquot_tag": "ALQ_339efeb3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.RNA-Seq.S7_L002_R2.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3970339191 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 46af4790-fdce-4e91-bce0-b64ff7e6adcb 7854b11c933fa83c98dca9b821e398af {"aliquot_tag": "ALQ_339efeb3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.RNA-Seq.transcriptome.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.transcriptome.gdc_realn.bam 10437159748 BAM transcriptome harmonized CPTAC3 23238661-c52b-4498-8af6-97c073cfa000 079834374717d6a59b179dc4083ae35d {"aliquot_tag": "ALQ_9e41ca92", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01955.RNA-Seq.transcriptome.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.transcriptome.gdc_realn.bam 8441188424 BAM transcriptome harmonized CPTAC3 088076ea-9de3-4458-9e98-940f0c38bde7 9249d29464c24df62de81e307b6d9dd2 {"aliquot_tag": "ALQ_339efeb3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.WGS.N C3L-01955 CCRCC WGS blood_normal CPT0389840002 CPT0389840002.WholeGenome.RP-2158.bam 28916531149 BAM submitted_aligned CPTAC3 e624d77b-e026-44ce-8b5b-d8358b47f666 cd56cb98a860eff28ddf503d9aa0f981 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01955.WGS.N.hg38 C3L-01955 CCRCC WGS blood_normal CPT0389840002 09ce9065-3d14-4688-8f2e-578363c79726_wgs_gdc_realn.bam 87155275545 BAM harmonized CPTAC3 cd1599ab-6829-4e95-aee2-e90f1ac79260 a0844ae9ac64db75dc59d027b8b54312 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01955.WGS.T C3L-01955 CCRCC WGS tumor CPT0389780006 CPT0389780006.WholeGenome.RP-2158.bam 25254646585 BAM submitted_aligned CPTAC3 c6d71be3-07fd-480d-8d4e-f22986c94e73 9e35de08f0e3ab948a78b24da19c1105 {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.WGS.T.hg38 C3L-01955 CCRCC WGS tumor CPT0389780006 b3334be3-cf54-432a-9d4e-e9623216be67_wgs_gdc_realn.bam 79640211812 BAM harmonized CPTAC3 8236977f-2539-4521-9af2-5440e358e7aa 346246aaaec4f84c9bdb895b4fb67cbb {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.WXS.N C3L-01955 CCRCC WXS blood_normal CPT0389840002 CPT0389840002.WholeExome.RP-1303.bam 24480024582 BAM submitted_aligned CPTAC3 1686df8d-6217-4b19-a388-23a3463095e5 0af5e394fcd7829674407a4fa931e7b9 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01955.WXS.N.hg38 C3L-01955 CCRCC WXS blood_normal CPT0389840002 09ce9065-3d14-4688-8f2e-578363c79726_wxs_gdc_realn.bam 34025730562 BAM harmonized CPTAC3 45b12b7e-770c-4851-a2a0-1d16f8370938 4a8b651b7973cac5c3681d866845ef08 {"aliquot_tag": "ALQ_90ea78ef", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01955.WXS.T C3L-01955 CCRCC WXS tumor CPT0389780006 CPT0389780006.WholeExome.RP-1303.bam 21008085563 BAM submitted_aligned CPTAC3 31c6acfb-03d2-4006-bc63-2b72543a5278 6de7d0a0114ba0d5ba869d5ae07a54f8 {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01955.WXS.T.hg38 C3L-01955 CCRCC WXS tumor CPT0389780006 b3334be3-cf54-432a-9d4e-e9623216be67_wxs_gdc_realn.bam 28932542789 BAM harmonized CPTAC3 b2f9dad3-a7ff-4e78-8da9-ba96e502227a 671d671874b3aa07790b1173d84b028a {"aliquot_tag": "ALQ_a321e322", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01958.MethArray.Green.T C3L-01958 CCRCC Methylation_Array tumor CPT0100370009 202234370093_R07C01_Grn.idat 13676232 IDAT Green NA CPTAC3 7d551149-867c-41c1-b93f-38671df0d1da 6bff14c1632f474cb9ee390daa67f420 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.MethArray.Red.T C3L-01958 CCRCC Methylation_Array tumor CPT0100370009 202234370093_R07C01_Red.idat 13676232 IDAT Red NA CPTAC3 60d6724c-7605-4f36-90a8-418fb04a1ec2 dbbf5f053db8da308fd108749de11387 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.miRNA-Seq.S15_L006_R1.T C3L-01958 CCRCC miRNA-Seq tumor CPT0100370006 180828_UNC32-K00270_0112_AHWTLNBBXX_GAGTGG_S15_L006_R1_001.unaln.bam 218019570 BAM S15_L006_R1 submitted_unaligned CPTAC3 b9f0fa0c-4d9e-4816-9d7b-b85a057c7f55 3ad0811576c2d2a180d629b704158a59 {"aliquot_tag": "ALQ_d26b4005", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.miRNA-Seq.T.hg38 C3L-01958 CCRCC miRNA-Seq tumor CPT0100370006 1ed7261a-2b75-446e-8776-7341d971b3ab_mirnaseq_gdc_realn.bam 243518404 BAM harmonized CPTAC3 3521c557-f4d6-4054-b2bf-1563ca358b3e dd18df604c1a086fb075eedf21314ca8 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.RNA-Seq.chimeric.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.chimeric.gdc_realn.bam 44269243 BAM chimeric harmonized CPTAC3 e769880c-f5b7-409a-9f3d-8838e49dd9b0 02c7f7167c3e03d5d3f3b8e60505be93 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.RNA-Seq.genomic.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.genomic.gdc_realn.bam 10278615093 BAM genomic harmonized CPTAC3 f45c852c-757c-4a82-aef0-9e926aeea512 7381d45f22778871d7be911990b3d038 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.RNA-Seq.S16_L005_R1.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R1_001.fastq.gz 4642650499 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 a39f2ceb-b3dd-4206-8ab9-2a5137d085ab 03e619253d7e149384f8300ad37dcfbf {"aliquot_tag": "ALQ_d26b4005", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.RNA-Seq.S16_L005_R2.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R2_001.fastq.gz 5063056216 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 01c44fbd-7f32-429d-8a5e-2c67c5a759ed b0a20dddec5cbec498a0e831617fe24a {"aliquot_tag": "ALQ_d26b4005", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.RNA-Seq.transcriptome.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.transcriptome.gdc_realn.bam 11841049764 BAM transcriptome harmonized CPTAC3 b70b95f5-cac9-487f-a45e-2ca67725ba31 e1995c82e8b3960399be90482da6d1f0 {"aliquot_tag": "ALQ_d26b4005", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.WGS.N C3L-01958 CCRCC WGS blood_normal CPT0101910002 CPT0101910002.WholeGenome.RP-1303.bam 67325535791 BAM submitted_aligned CPTAC3 b3f2013f-8f4c-48e9-84d6-751ded37f432 b87cdfe83dd28979e813e69b22838222 {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01958.WGS.N.hg38 C3L-01958 CCRCC WGS blood_normal CPT0101910002 168bdd2c-ded5-4d4c-a41d-77745479c8f2_wgs_gdc_realn.bam 99482728827 BAM harmonized CPTAC3 47012a9e-ed95-4b84-af10-a0a005f17350 0156e1c544a6c398418e028ebeea5e7a {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01958.WGS.T C3L-01958 CCRCC WGS tumor CPT0100370009 CPT0100370009.WholeGenome.RP-1303.bam 65920073001 BAM submitted_aligned CPTAC3 ab704686-2c71-48ad-a981-4ddf4208e415 9915b7aebf33ba6b99ace60accd9820e {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.WGS.T.hg38 C3L-01958 CCRCC WGS tumor CPT0100370009 0d7c2c0c-688e-4521-8b39-9836aeb1acda_wgs_gdc_realn.bam 96488007264 BAM harmonized CPTAC3 806ffb37-8559-49c0-81ac-b558d53465d3 a6765bdea02e942284262251b8213b05 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.WXS.N C3L-01958 CCRCC WXS blood_normal CPT0101910002 CPT0101910002.WholeExome.RP-1303.bam 34078045552 BAM submitted_aligned CPTAC3 7f07c74a-1854-4f3a-8309-6ffe040dfc20 3245ff68cd743dfb97e335b7b391ca6b {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01958.WXS.N.hg38 C3L-01958 CCRCC WXS blood_normal CPT0101910002 168bdd2c-ded5-4d4c-a41d-77745479c8f2_wxs_gdc_realn.bam 46404902534 BAM harmonized CPTAC3 858619a9-99b8-4821-86eb-1bdb1aabd5c3 23cccdb824117d8f055a0d188cc340f4 {"aliquot_tag": "ALQ_5daa596e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01958.WXS.T C3L-01958 CCRCC WXS tumor CPT0100370009 CPT0100370009.WholeExome.RP-1303.bam 61703658210 BAM submitted_aligned CPTAC3 fb56d799-032f-48dc-8872-b19af156a8e2 e173b0ef7af68ed099c1ea0d8b428827 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01958.WXS.T.hg38 C3L-01958 CCRCC WXS tumor CPT0100370009 0d7c2c0c-688e-4521-8b39-9836aeb1acda_wxs_gdc_realn.bam 83944813030 BAM harmonized CPTAC3 123fa4fd-83ea-40c5-833b-55d85631ff63 4c8657ffae716325d3a2235d7a907b50 {"aliquot_tag": "ALQ_42d45d94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01960.MethArray.Green.T C3L-01960 CCRCC Methylation_Array tumor CPT0389730006 205589730117_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 52b91dca-f739-4871-9913-ddeaafb58cf7 5243f9a3ff4ca14852a0bacff22da691 {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.MethArray.Red.T C3L-01960 CCRCC Methylation_Array tumor CPT0389730006 205589730117_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 34293d5d-63b7-466a-99d2-1713bbbb573e 96e7696f450e2a3b752ba5e01a12d011 {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.miRNA-Seq.S20_L002_R1.T C3L-01960 CCRCC miRNA-Seq tumor CPT0389730009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACCGG_S20_L002_R1_001.unaln.bam 297332196 BAM S20_L002_R1 submitted_unaligned CPTAC3 572a453b-e4e4-4f46-a525-69d45bdfbb3e 308665336798af82a5143ea3d6ecfa70 {"aliquot_tag": "ALQ_444ecfa2", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.miRNA-Seq.T.hg38 C3L-01960 CCRCC miRNA-Seq tumor CPT0389730009 bd1efb40-71b7-49ca-b594-846aa4daa916_mirnaseq_gdc_realn.bam 319601340 BAM harmonized CPTAC3 a65302eb-446d-4efe-b8bf-cb204e702cb2 654add8c90bd7aa9a474cf1abb1dd512 {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.RNA-Seq.chimeric.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.chimeric.gdc_realn.bam 266584673 BAM chimeric harmonized CPTAC3 710aebc6-13cd-4075-8032-b7d90984df90 a07d2f99f511e0f788c30d92b67e5a7d {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.RNA-Seq.genomic.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.genomic.gdc_realn.bam 7047435524 BAM genomic harmonized CPTAC3 8143f24d-a1b4-419b-9df8-5454e99aa5b4 0f316888a729a585069ce65c7a412fc7 {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.RNA-Seq.S8_L002_R1.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3417662865 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 6f89d1ac-ee31-4f03-b888-45a45b31ab8e 2fe5bb20496332613357847114d31302 {"aliquot_tag": "ALQ_444ecfa2", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.RNA-Seq.S8_L002_R2.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3747889595 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 35f43882-1777-4ac0-b321-b12a62270471 53568e85f6482057a62103bb94371aa4 {"aliquot_tag": "ALQ_444ecfa2", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.RNA-Seq.transcriptome.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.transcriptome.gdc_realn.bam 9358008687 BAM transcriptome harmonized CPTAC3 b9088eab-80d1-4184-a9b5-f3daf0a7a975 4829121a6d9744f7fbb0349abd757f3c {"aliquot_tag": "ALQ_444ecfa2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.WGS.N C3L-01960 CCRCC WGS blood_normal CPT0389760002 CPT0389760002.WholeGenome.RP-2158.bam 21502252470 BAM submitted_aligned CPTAC3 66a44ce2-a925-4e87-aedb-e3c8c80f7741 a029cbf43288aec12b5bb2bae12f5a49 {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01960.WGS.N.hg38 C3L-01960 CCRCC WGS blood_normal CPT0389760002 103e51f0-bea5-404a-a5f6-7857f9a4cb19_wgs_gdc_realn.bam 65846421329 BAM harmonized CPTAC3 20e975e7-309a-416a-995a-1d024372fad2 fa0db1d0ded9ddf4ef061804b8a33e97 {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01960.WGS.T C3L-01960 CCRCC WGS tumor CPT0389730006 CPT0389730006.WholeGenome.RP-2158.bam 24635084665 BAM submitted_aligned CPTAC3 b3407d1c-249b-4be7-80e0-491766c1e818 2006f45a0d2bd7f4c01662e9775a29bc {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.WGS.T.hg38 C3L-01960 CCRCC WGS tumor CPT0389730006 8b155356-2973-4d95-bd1e-cb3dd8e469eb_wgs_gdc_realn.bam 74728993999 BAM harmonized CPTAC3 c069fc11-5807-47e5-b6aa-6f7cd52d10a9 f2179ace052b56dc8d702727d33f8aaa {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.WXS.N C3L-01960 CCRCC WXS blood_normal CPT0389760002 CPT0389760002.WholeExome.RP-1303.bam 22696151198 BAM submitted_aligned CPTAC3 16e5320c-51fd-458d-bef3-7259c66a2913 f2e29cc11b7de0f94642de9cbb00690d {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01960.WXS.N.hg38 C3L-01960 CCRCC WXS blood_normal CPT0389760002 103e51f0-bea5-404a-a5f6-7857f9a4cb19_wxs_gdc_realn.bam 31452058983 BAM harmonized CPTAC3 513fcf84-cf8e-40fa-81d1-e091b9918d69 0f5fdb1974c5949b4382a35716a192c3 {"aliquot_tag": "ALQ_1b7c995a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01960.WXS.T C3L-01960 CCRCC WXS tumor CPT0389730006 CPT0389730006.WholeExome.RP-1303.bam 19318347818 BAM submitted_aligned CPTAC3 0678c325-0f45-4168-9d77-ae3d7ecf45d0 a2a8784c9ae37c7801373f30d7498a1c {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01960.WXS.T.hg38 C3L-01960 CCRCC WXS tumor CPT0389730006 8b155356-2973-4d95-bd1e-cb3dd8e469eb_wxs_gdc_realn.bam 26941033475 BAM harmonized CPTAC3 0aa4f0f8-4d18-4448-8429-51c919f6527a 7dec001c7017dbb9e6cd339c9eee2826 {"aliquot_tag": "ALQ_d4f1d233", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01962.MethArray.Green.A C3L-01962 CCRCC Methylation_Array tissue_normal CPT0389660006 205549610123_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b4900224-6b64-47cf-9d26-907cc0b2d4fc d1febca0545af445410611e7fa3598b1 {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.MethArray.Green.T C3L-01962 CCRCC Methylation_Array tumor CPT0389650006 205589740002_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4a3c3d92-d81d-411b-93dc-05d70074f649 847eb01869886888b10576abc3af69ec {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.MethArray.Red.A C3L-01962 CCRCC Methylation_Array tissue_normal CPT0389660006 205549610123_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 aa20aa00-6145-41ab-a1ab-e9926ed0049d 2f50471f7cdda22ceadb7d067d8bbd7a {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.MethArray.Red.T C3L-01962 CCRCC Methylation_Array tumor CPT0389650006 205589740002_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 e3901159-70a9-40c1-93e7-5c611d25ae76 83282b9d4986dfce10d3d069d0bfcaea {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.miRNA-Seq.A.hg38 C3L-01962 CCRCC miRNA-Seq tissue_normal CPT0389660009 094296a8-a39f-4924-9396-166e3632e352_mirnaseq_gdc_realn.bam 361233849 BAM harmonized CPTAC3 6e7803a9-cd77-443b-845f-c20fa24a87af ea626fd378bc7f9f14b7658a5edd95d3 {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.miRNA-Seq.S7_L001_R1.T C3L-01962 CCRCC miRNA-Seq tumor CPT0389650009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAAAAG_S7_L001_R1_001.unaln.bam 355437813 BAM S7_L001_R1 submitted_unaligned CPTAC3 e26747ae-fbdd-40a6-b121-e61453deeb61 68e0641de1a317604e64fc78151237e9 {"aliquot_tag": "ALQ_52e9a7", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.miRNA-Seq.S8_L001_R1.A C3L-01962 CCRCC miRNA-Seq tissue_normal CPT0389660009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAACTA_S8_L001_R1_001.unaln.bam 339399776 BAM S8_L001_R1 submitted_unaligned CPTAC3 bcb30709-4e92-4be8-afd7-a7cf36132381 cd41b17d782174f6f5b85c61fce25bb8 {"aliquot_tag": "ALQ_47f29377", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.miRNA-Seq.T.hg38 C3L-01962 CCRCC miRNA-Seq tumor CPT0389650009 18b1b3a8-e009-419e-8d59-c657b80864a9_mirnaseq_gdc_realn.bam 387327722 BAM harmonized CPTAC3 0dceab24-1b8b-422d-a1f0-49cab95390b3 ef23e7f7c90a4e37b2f9c03c633278c8 {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.RNA-Seq.chimeric.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.chimeric.gdc_realn.bam 390703292 BAM chimeric harmonized CPTAC3 37337098-7634-4d67-842a-03145dfc6c4a 16924c393860bf87095bbe209c6642ff {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.RNA-Seq.chimeric.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.chimeric.gdc_realn.bam 376996206 BAM chimeric harmonized CPTAC3 6dd07296-f035-49ae-9dc6-caaa0dc1a08d 77b6669150dfcfaf2c41c408df959921 {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.RNA-Seq.genomic.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.genomic.gdc_realn.bam 8846093949 BAM genomic harmonized CPTAC3 ae2a2448-e7eb-40a9-9d96-41219190bb02 165a90cec317acfc7a484bb498f19ae9 {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.RNA-Seq.genomic.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.genomic.gdc_realn.bam 7859613123 BAM genomic harmonized CPTAC3 7076a2c3-3eb1-46a1-9bc8-d2d806b87a2b e1aeffca54084416917d8dba8139db3e {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.RNA-Seq.S12_L003_R1.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3725953474 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 7851811d-d666-4e23-b58f-7f40da924e59 8eb7097d3bbabb8607751e9a5cf9d139 {"aliquot_tag": "ALQ_52e9a7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.RNA-Seq.S12_L003_R2.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4245517766 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 9ea5fe71-b337-4238-ac51-a6cf1c2364a4 6359f1e857ff53cb206fd5b5c6e6ef4a {"aliquot_tag": "ALQ_52e9a7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.RNA-Seq.S6_L002_R1.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 4129963228 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 90163ff4-00c6-4827-9052-5ab802f312b8 f1cd9f7ba08ddb088545e2dbbd957700 {"aliquot_tag": "ALQ_47f29377", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.RNA-Seq.S6_L002_R2.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 4563350768 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 740424a0-f73a-4662-85df-6f97ee2a2a87 ffdb68d72fcfbf2a322627fe5fa347b0 {"aliquot_tag": "ALQ_47f29377", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.RNA-Seq.transcriptome.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.transcriptome.gdc_realn.bam 10121543876 BAM transcriptome harmonized CPTAC3 e648be29-d633-4dac-937c-97db0bd1e275 17b3e1d0d4fd7db60a6cce2f5207fdd9 {"aliquot_tag": "ALQ_47f29377", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.RNA-Seq.transcriptome.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.transcriptome.gdc_realn.bam 9858214132 BAM transcriptome harmonized CPTAC3 70ceab75-b58a-48b8-880d-d2bdef26405a cf77087bab2344bd141a3880bba74704 {"aliquot_tag": "ALQ_52e9a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.WGS.N C3L-01962 CCRCC WGS blood_normal CPT0389710002 CPT0389710002.WholeGenome.RP-2158.bam 33702716635 BAM submitted_aligned CPTAC3 ae6f1ff3-5cc6-4f8e-9ce5-6c76761de7d6 2c86e5342f796eb045240a37c3cd42e4 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01962.WGS.N.hg38 C3L-01962 CCRCC WGS blood_normal CPT0389710002 f8213505-75c6-4165-8bd8-72b44f0d5f35_wgs_gdc_realn.bam 103228384049 BAM harmonized CPTAC3 962d01a8-afc6-4290-b289-004e4b84fdde 7e7149496fa014cb9bf002ee7b784061 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01962.WGS.T C3L-01962 CCRCC WGS tumor CPT0389650006 CPT0389650006.WholeGenome.RP-2158.bam 23513442958 BAM submitted_aligned CPTAC3 e781ef67-f7bf-44ee-8cac-3f0299c18830 fb7322b786f83508993209908c2b1d42 {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.WGS.T.hg38 C3L-01962 CCRCC WGS tumor CPT0389650006 9d82817b-c087-4cac-8474-b25b40e6fb5d_wgs_gdc_realn.bam 69314644404 BAM harmonized CPTAC3 459e2d6f-4d70-46cf-9dfc-5ede02e1e1da 27183dc1f35143c7f2bb30ac82aaaec0 {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.WXS.A C3L-01962 CCRCC WXS tissue_normal CPT0389660006 CPT0389660006.WholeExome.RP-1303.bam 22364873936 BAM submitted_aligned CPTAC3 25e0f4fb-e4ae-42ea-ac92-c713d2c7b800 40f394e6d1c6c347240b9a817c1bbf50 {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01962.WXS.A.hg38 C3L-01962 CCRCC WXS tissue_normal CPT0389660006 2f69adeb-8c46-4c39-90bc-28494f9ab598_wxs_gdc_realn.bam 31210482407 BAM harmonized CPTAC3 51d89d20-cc4c-429f-a469-6d553bdc29ca 25811e2897e57d225f3ba7d2ae5bddaa {"aliquot_tag": "ALQ_d74d8ee6", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3L-01962.WXS.N C3L-01962 CCRCC WXS blood_normal CPT0389710002 CPT0389710002.WholeExome.RP-1303.bam 25313791905 BAM submitted_aligned CPTAC3 91eda32e-6d9f-4cd2-8a0e-979fedf553f9 ea12edfce5d28edcffb52dc88ad0f103 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01962.WXS.N.hg38 C3L-01962 CCRCC WXS blood_normal CPT0389710002 f8213505-75c6-4165-8bd8-72b44f0d5f35_wxs_gdc_realn.bam 34885708851 BAM harmonized CPTAC3 1b608b94-5ab6-4e4b-b49c-db61e74b9fa3 dacfcffd058116297360f89c0325b8b9 {"aliquot_tag": "ALQ_a95c454a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-01962.WXS.T C3L-01962 CCRCC WXS tumor CPT0389650006 CPT0389650006.WholeExome.RP-1303.bam 24253324908 BAM submitted_aligned CPTAC3 ab112e18-7371-4a6f-9c7a-fcfef238430e 8cc9defe97a14be169db1ed94f7e0aa7 {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01962.WXS.T.hg38 C3L-01962 CCRCC WXS tumor CPT0389650006 9d82817b-c087-4cac-8474-b25b40e6fb5d_wxs_gdc_realn.bam 33826704965 BAM harmonized CPTAC3 0d9b48e5-13a7-4640-958a-493acc3b51f8 2bfcb74f168f60db9d634a750f2f74de {"aliquot_tag": "ALQ_90edf436", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-01963.MethArray.Green.T C3L-01963 CCRCC Methylation_Array tumor CPT0100320009 202234380061_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 2418bf10-125a-4119-b9d7-9198aae769a0 c5adf80188fb165662f06c121439daae {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.MethArray.Red.T C3L-01963 CCRCC Methylation_Array tumor CPT0100320009 202234380061_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 0beb978e-7125-44c1-8b67-0fa402a4e474 d1984f5e405774c1ccf19270afc22fde {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.miRNA-Seq.S24_L006_R1.T C3L-01963 CCRCC miRNA-Seq tumor CPT0100320006 180828_UNC32-K00270_0112_AHWTLNBBXX_GGTAGC_S24_L006_R1_001.unaln.bam 217559799 BAM S24_L006_R1 submitted_unaligned CPTAC3 6f318922-92a6-4561-8ded-a0b69fb67306 47905586566cb927804a02b56785874e {"aliquot_tag": "ALQ_1a8bcf75", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.miRNA-Seq.T.hg38 C3L-01963 CCRCC miRNA-Seq tumor CPT0100320006 65f7612f-047e-483c-a42a-f4c9c7a36c69_mirnaseq_gdc_realn.bam 248090391 BAM harmonized CPTAC3 446dfafa-e69f-4181-b8b4-0be48ae9e441 24c0900dd0f564fb0203936dc9ca4a01 {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.RNA-Seq.chimeric.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.chimeric.gdc_realn.bam 57726143 BAM chimeric harmonized CPTAC3 4042b991-f328-41d9-9ddb-88644dd415ba db80f05085e122624c2adbfab42e5069 {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.RNA-Seq.genomic.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.genomic.gdc_realn.bam 8942399393 BAM genomic harmonized CPTAC3 fee8019a-c930-4717-8300-a9d6ccbfd767 b27904a7b8fb9844efaf500b787d8643 {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.RNA-Seq.S19_L005_R1.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R1_001.fastq.gz 4172171312 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 8505c1ca-c192-4185-9488-e05ca000bb7c 78cf2904dbfd4d0a7d06f58a890df66a {"aliquot_tag": "ALQ_1a8bcf75", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.RNA-Seq.S19_L005_R2.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R2_001.fastq.gz 4569844205 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 e7918878-b95e-4723-bbae-29e7cb71f8d5 2cab707b1e13ba60a1471970cabbd879 {"aliquot_tag": "ALQ_1a8bcf75", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.RNA-Seq.transcriptome.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.transcriptome.gdc_realn.bam 10113415072 BAM transcriptome harmonized CPTAC3 137c4d86-3e0f-4204-961d-cce26c7be5a0 522b8f91098df19a0fb82fbc97363f2f {"aliquot_tag": "ALQ_1a8bcf75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.WGS.N C3L-01963 CCRCC WGS blood_normal CPT0101890002 CPT0101890002.WholeGenome.RP-1303.bam 57256663390 BAM submitted_aligned CPTAC3 97240d1b-b129-4537-9dd8-58a254581fba 5fa188314d68f500231bfad2e5c85c99 {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01963.WGS.N.hg38 C3L-01963 CCRCC WGS blood_normal CPT0101890002 e2755a99-ff45-4a2c-9d57-0a01d0e2e979_wgs_gdc_realn.bam 83056219291 BAM harmonized CPTAC3 92d8e354-101d-45fe-9bf8-6c6a0488de8d 2caf4682739754b0def022340f043b8f {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01963.WGS.T C3L-01963 CCRCC WGS tumor CPT0100320009 CPT0100320009.WholeGenome.RP-1303.bam 64104547237 BAM submitted_aligned CPTAC3 95ea6301-37a6-4a87-9347-3c8891c6dc4e 44fe72ef37ec5e291cd19c8d4f607cbd {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.WGS.T.hg38 C3L-01963 CCRCC WGS tumor CPT0100320009 4855d4ef-58e9-4bf3-87e1-e0b8abf8bc3e_wgs_gdc_realn.bam 93414197377 BAM harmonized CPTAC3 e05ebd44-d635-464b-b1c6-3d462f1a7ca6 27c2603091ff3a52892c75b8ebad9885 {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.WXS.N C3L-01963 CCRCC WXS blood_normal CPT0101890002 CPT0101890002.WholeExome.RP-1303.bam 48258674957 BAM submitted_aligned CPTAC3 91f8f1eb-bdc1-4523-accb-f7ef76cac38d 6ef928692846dcc62775d97821812e17 {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01963.WXS.N.hg38 C3L-01963 CCRCC WXS blood_normal CPT0101890002 e2755a99-ff45-4a2c-9d57-0a01d0e2e979_wxs_gdc_realn.bam 66630719157 BAM harmonized CPTAC3 d677dba6-e623-4daa-8694-32e9892c1f49 7de3cc3d67abfd302cf55f811ed36e87 {"aliquot_tag": "ALQ_a686c10a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01963.WXS.T C3L-01963 CCRCC WXS tumor CPT0100320009 CPT0100320009.WholeExome.RP-1303.bam 34620699107 BAM submitted_aligned CPTAC3 9070cb92-719d-4b54-8403-0b1381053022 fcbcdbe4846a24842d1b903b4a5ea8fa {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01963.WXS.T.hg38 C3L-01963 CCRCC WXS tumor CPT0100320009 4855d4ef-58e9-4bf3-87e1-e0b8abf8bc3e_wxs_gdc_realn.bam 47921463207 BAM harmonized CPTAC3 1704d3d8-2fcb-4348-92fd-e272ef888df1 be9ca08ca007246fa87290da8340d9e3 {"aliquot_tag": "ALQ_8a34d2e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01967.MethArray.Green.T C3L-01967 UCEC Methylation_Array tumor CPT0108750009 202234370091_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a0d8eb4d-19d2-40ae-a979-972449bfefea d8907de22059e7e41a5c0e296db30c42 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.MethArray.Red.T C3L-01967 UCEC Methylation_Array tumor CPT0108750009 202234370091_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 a315cd32-c387-49a0-b01c-6a8033e4e616 db7ddd18ae3c1bc8295f9e3e5b91048f {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.miRNA-Seq.A.hg38 C3L-01967 UCEC miRNA-Seq tissue_normal CPT0108790006 c0d6a909-d5e6-4b49-9101-dcc3724f02bd_mirnaseq_gdc_realn.bam 336455431 BAM harmonized CPTAC3 6d6b1402-a5ed-4cf9-bb2a-a10ca58f0ef1 3a9bfb554d1f614f02161546ac604c70 {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.miRNA-Seq.S39_L003_R1.T C3L-01967 UCEC miRNA-Seq tumor CPT0108750006 181119_UNC31-K00269_0165_AH27WCBBXY_ATGTCA_S39_L003_R1_001.unaln.bam 260907202 BAM S39_L003_R1 submitted_unaligned CPTAC3 bf363d7f-59bb-4f9e-b78f-16c21d8233ea 97db5b09267a887cbde9555ace65b487 {"aliquot_tag": "ALQ_d51f14", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.miRNA-Seq.S9_L001_R1.A C3L-01967 UCEC miRNA-Seq tissue_normal CPT0108790006 181119_UNC31-K00269_0165_AH27WCBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 290260691 BAM S9_L001_R1 submitted_unaligned CPTAC3 0862c880-6543-4e18-815c-0cc43727236a 2862bc41cb7be59d4448dc0c1d473f81 {"aliquot_tag": "ALQ_c525f215", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.miRNA-Seq.T.hg38 C3L-01967 UCEC miRNA-Seq tumor CPT0108750006 e29719d5-95c7-4146-a893-993d51692d1e_mirnaseq_gdc_realn.bam 289379267 BAM harmonized CPTAC3 9c272b1a-54bb-47b9-88a2-5cc2993862be 182669cc9bab2a30fef2df8d646ed118 {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.chimeric.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.chimeric.gdc_realn.bam 67348615 BAM chimeric harmonized CPTAC3 0adffc77-c782-4c8b-a330-e0821a70af08 6982a7156aae5142218188fbaa5344ff {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.RNA-Seq.chimeric.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.chimeric.gdc_realn.bam 68459647 BAM chimeric harmonized CPTAC3 67f98baf-efb3-4417-8ec1-33440a845386 69717a7437cd1b5da337237cf1654fff {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.chimeric.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.chimeric.gdc_realn.bam 121443503 BAM chimeric harmonized CPTAC3 4c34f079-a05f-4749-8b35-cfbb673ba83d 3e31d5178d545a6c4bde26ab8b3ec299 {"aliquot_tag": "ALQ_9a679ea2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.genomic.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.genomic.gdc_realn.bam 8922883280 BAM genomic harmonized CPTAC3 95d741d5-838c-4037-8e9a-f75d09a3ecc7 0bd6eafcef8221a235d14ec647c6e432 {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.RNA-Seq.genomic.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.genomic.gdc_realn.bam 9859230876 BAM genomic harmonized CPTAC3 211ba8b7-93de-40ce-b67b-902f65f8febe 20e50f3f5c59a11f31851982de214ca9 {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.genomic.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.genomic.gdc_realn.bam 5850682957 BAM genomic harmonized CPTAC3 4d82d3cb-dfdb-4b2e-86d4-8adfba8808ec 7d43eca6bed6bf05196c4be38baa1330 {"aliquot_tag": "ALQ_9a679ea2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.S21_L006_R1.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 4413815726 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 d7ed9bb4-a7f6-4516-86ec-e6cf1fa395ad 3bedda0c94387ac59b87029e11af9cd7 {"aliquot_tag": "ALQ_d51f14", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.S21_L006_R2.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 4970728519 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 22a3da5a-689e-494d-be36-0f9c0b42a263 1eee68799d2ce9ac647999f406126619 {"aliquot_tag": "ALQ_d51f14", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.S8_R1.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R1_001.fastq.gz 3757601817 FASTQ S8_R1 submitted_unaligned CPTAC3 46da3bde-ee2c-4a41-98e3-098cd192dd03 c57a776a3a335312cd2b4060a13a18db {"aliquot_tag": "ALQ_9a679ea2", "sample": "S8", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.S8_R2.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R2_001.fastq.gz 3840259151 FASTQ S8_R2 submitted_unaligned CPTAC3 95c0b8d9-5c4c-40db-8544-7eeeb9fbedfc b99164984591f066588cacdc0bc97c9f {"aliquot_tag": "ALQ_9a679ea2", "sample": "S8", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.S9_L003_R1.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R1_001.fastq.gz 4097490512 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 74d46258-f21a-4f4e-b04e-96340efb60e3 50aacef8aeb92136a900926e8caa2e98 {"aliquot_tag": "ALQ_c525f215", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.RNA-Seq.S9_L003_R2.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R2_001.fastq.gz 4491544632 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 fccdf1bc-36b2-4923-b46d-591968fc7c8b 477dfefb4072f2f5cb4769b9fc3dd40c {"aliquot_tag": "ALQ_c525f215", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.RNA-Seq.transcriptome.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.transcriptome.gdc_realn.bam 11233841877 BAM transcriptome harmonized CPTAC3 53d12e64-ae56-453c-9870-068a8a479843 a7ec409a09facc00d52752b81d2dba05 {"aliquot_tag": "ALQ_c525f215", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.RNA-Seq.transcriptome.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.transcriptome.gdc_realn.bam 12454204394 BAM transcriptome harmonized CPTAC3 33c9cf08-fe8d-42f0-ad0e-2decc737046f 2d793e099b305ee54037523443f00c59 {"aliquot_tag": "ALQ_d51f14", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.RNA-Seq.transcriptome.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.transcriptome.gdc_realn.bam 3333635265 BAM transcriptome harmonized CPTAC3 2c8b0ce8-f193-4e67-a517-a5b180df6428 708d3235efe40456576da2e91bf35f3f {"aliquot_tag": "ALQ_9a679ea2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.WGS.A C3L-01967 UCEC WGS tissue_normal CPT0108790009 CPT0108790009.WholeGenome.RP-1303.bam 60116612201 BAM submitted_aligned CPTAC3 959f0294-1ba2-476c-991c-07f1bbf75e05 55b80d12183c2fe5429b0456f29583e2 {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.WGS.A.hg38 C3L-01967 UCEC WGS tissue_normal CPT0108790009 e783f1a5-04c3-4885-9700-d31847165b48_wgs_gdc_realn.bam 87786339082 BAM harmonized CPTAC3 55fdfd29-dcdd-4f5e-872f-ed3b2fc4391e c97723b49f64e5ac2c56fd1f57f78981 {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.WGS.N C3L-01967 UCEC WGS blood_normal CPT0108350002 CPT0108350002.WholeGenome.RP-1303.bam 73651233491 BAM submitted_aligned CPTAC3 61b10ca7-d61d-4ae0-83c2-c6971a632aea 607f0857465ed92eab97e034940ba694 {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01967.WGS.N.hg38 C3L-01967 UCEC WGS blood_normal CPT0108350002 04b3ef7b-97cf-41be-9f9a-e48bed492011_wgs_gdc_realn.bam 108368952406 BAM harmonized CPTAC3 f92832c1-0ead-4605-9a5f-eee3cc519642 3aedeca4fffaf05e1f790eec896d1f7b {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01967.WGS.T C3L-01967 UCEC WGS tumor CPT0108750009 CPT0108750009.WholeGenome.RP-1303.bam 61617277944 BAM submitted_aligned CPTAC3 5e6d7a8b-7356-4698-9342-79dc14ea2488 8179ba29caf68eb36557df17d352f834 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.WGS.T.hg38 C3L-01967 UCEC WGS tumor CPT0108750009 86b015e8-a868-4af3-af5c-4e389fb1b08d_wgs_gdc_realn.bam 90892462734 BAM harmonized CPTAC3 4dc40709-0504-4ef3-ba5c-e7a2394d801e 7663a68a3d3ef616a75d7c89c532f42a {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.WXS.A C3L-01967 UCEC WXS tissue_normal CPT0108790009 CPT0108790009.WholeExome.RP-1303.bam 35528371729 BAM submitted_aligned CPTAC3 15d286ff-6a8d-4bf2-bd84-4cd6649fdac2 9c7b55cbdf10ad339365bb8e9f4ed79c {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.WXS.A.hg38 C3L-01967 UCEC WXS tissue_normal CPT0108790009 e783f1a5-04c3-4885-9700-d31847165b48_wxs_gdc_realn.bam 47364862076 BAM harmonized CPTAC3 6b7ea7b3-8533-406a-956b-0bd46448a581 526caf7738fd715465f45a880666ae58 {"aliquot_tag": "ALQ_559aef84", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-01967.WXS.N C3L-01967 UCEC WXS blood_normal CPT0108350002 CPT0108350002.WholeExome.RP-1303.bam 31983276564 BAM submitted_aligned CPTAC3 2712a15a-edcf-4559-81a7-47ee0d7c0173 7750798458329972bdc668e7a5a65b05 {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01967.WXS.N.hg38 C3L-01967 UCEC WXS blood_normal CPT0108350002 04b3ef7b-97cf-41be-9f9a-e48bed492011_wxs_gdc_realn.bam 42766142501 BAM harmonized CPTAC3 7aeeee65-9ff9-4013-9fda-10c47bdd7c02 9a8ca98dfbcefba699a34c54d05492af {"aliquot_tag": "ALQ_9c29991b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-01967.WXS.T C3L-01967 UCEC WXS tumor CPT0108750009 CPT0108750009.WholeExome.RP-1303.bam 37557669150 BAM submitted_aligned CPTAC3 37f8410d-ca55-4bb3-b2d1-90e78b8f4b38 6a075086e70f72b07056a9b8bd6f03f9 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01967.WXS.T.hg38 C3L-01967 UCEC WXS tumor CPT0108750009 86b015e8-a868-4af3-af5c-4e389fb1b08d_wxs_gdc_realn.bam 51372016726 BAM harmonized CPTAC3 d1da335f-7177-42d6-8417-1a67ce3d6f45 f81b5f13ee9b1b9d679b4edf2d060356 {"aliquot_tag": "ALQ_906a0285", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01971.MethArray.Green.T C3L-01971 PDA Methylation_Array tumor CPT0108930009 202234380061_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9d294240-9007-4d6b-9627-730d952ca936 35ce2d0c7598d5a7cfc869dcb0621923 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.MethArray.Red.T C3L-01971 PDA Methylation_Array tumor CPT0108930009 202234380061_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 2c972e44-074c-45ce-ab4a-398d46f5d0b8 57cdb555c4ff1f83f3c9a2e0a0b590e4 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.miRNA-Seq.S40_L003_R1.T C3L-01971 PDA miRNA-Seq tumor CPT0108930006 181119_UNC31-K00269_0165_AH27WCBBXY_CCGTCC_S40_L003_R1_001.unaln.bam 247259075 BAM S40_L003_R1 submitted_unaligned CPTAC3 8662e5d7-4605-42bf-8640-e6ff9b241480 8064ac373aecf8b4296c0062af7ff63e {"aliquot_tag": "ALQ_b59f8bc4", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.miRNA-Seq.T.hg38 C3L-01971 PDA miRNA-Seq tumor CPT0108930006 6196237e-70c1-4ac0-9ff4-b38520c8a854_mirnaseq_gdc_realn.bam 268553445 BAM harmonized CPTAC3 5469e56a-4901-444d-a077-ea11a415faaf 95c3e5d15a7ea75f1f6a58366d4d668e {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.RNA-Seq.chimeric.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.chimeric.gdc_realn.bam 68651865 BAM chimeric harmonized CPTAC3 4ecf2ce1-d070-4961-bfef-f3ce3d3362ce 77b13fdf0b8d5c2807447e9f949aad3f {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.RNA-Seq.genomic.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.genomic.gdc_realn.bam 8684543702 BAM genomic harmonized CPTAC3 9b4a6db6-7979-4107-9899-591d1e052b8d ec2207d90db2e682f772a5ad2dff2648 {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.RNA-Seq.S20_L006_R1.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3546049460 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 99349916-a315-4682-9e02-d9afda5b73b3 d736e1109f9314b9d9247e4e58479111 {"aliquot_tag": "ALQ_b59f8bc4", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.RNA-Seq.S20_L006_R2.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3998905656 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 04d12709-918a-43df-82c7-07bf8c3e52f3 f9b3351b7f725009e1818ec80504ec12 {"aliquot_tag": "ALQ_b59f8bc4", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.RNA-Seq.transcriptome.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.transcriptome.gdc_realn.bam 9766378217 BAM transcriptome harmonized CPTAC3 86a8d0ee-9d1b-4bfe-af3d-8bdfc11ecd6c 5a2476da11fc0dbfbccb72d4e358bfe8 {"aliquot_tag": "ALQ_b59f8bc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.Targeted.T C3L-01971 PDA Targeted_Sequencing tumor CPT0108930009_1 CPT0108930009_1.CustomSelection.RP-1303.PDO-18786.bam 4484410057 BAM submitted_aligned CPTAC3 269718aa-9795-4b90-ac93-7de66d298740 174d3fd87b63369719364c8c4dd6aba3 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.Targeted.T.hg38 C3L-01971 PDA Targeted_Sequencing tumor CPT0108930009_1 9a04e944-5951-497c-ba61-38fb9e5ca2a3_targetedsequencing_gdc_realn.bam 6286950402 BAM harmonized CPTAC3 eeec3718-62ab-4369-bf1e-40d82a03eb7b 18df9d3550f5f6ab583ba731a51bb835 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.WGS.N C3L-01971 PDA WGS blood_normal CPT0108360002 CPT0108360002.WholeGenome.RP-1303.bam 60795890745 BAM submitted_aligned CPTAC3 fab6874f-a7d7-4416-9d2c-5d4eb3c8eaf5 c4f7552c9598b73e111e51b90a7e2108 {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01971.WGS.N.hg38 C3L-01971 PDA WGS blood_normal CPT0108360002 ad281038-bcbb-4201-9846-b392a6494955_wgs_gdc_realn.bam 90181199558 BAM harmonized CPTAC3 79937411-d12e-47a2-86d7-ce399dc0d66a 1c716c25df85228be955c15b60b30776 {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01971.WGS.T C3L-01971 PDA WGS tumor CPT0108930009 CPT0108930009.WholeGenome.RP-1303.bam 60100816919 BAM submitted_aligned CPTAC3 916b7040-9bc3-457f-8536-c0e958a13dc0 7ced3992bb8f153b3e866b1f0a8f5595 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.WGS.T.hg38 C3L-01971 PDA WGS tumor CPT0108930009 bc19da78-4f82-4968-b4cc-826951d40d98_wgs_gdc_realn.bam 89530185663 BAM harmonized CPTAC3 b07bfa8f-80a1-4da0-8725-d23f86842dba 167cb293388bc8dab15026b9b63c9641 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.WXS.N C3L-01971 PDA WXS blood_normal CPT0108360002 CPT0108360002.WholeExome.RP-1303.bam 27890058638 BAM submitted_aligned CPTAC3 de5645fb-43fb-48a4-a761-0d4c8885f8ea 80e34b3ffd273e7484ac47a7e6675eaf {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01971.WXS.N.hg38 C3L-01971 PDA WXS blood_normal CPT0108360002 ad281038-bcbb-4201-9846-b392a6494955_wxs_gdc_realn.bam 37906135513 BAM harmonized CPTAC3 5afb9d9c-6484-4b80-b6c7-c4d1a6ba1521 7e813e801ee8cfe29a8ee244001afc11 {"aliquot_tag": "ALQ_db89e3cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01971.WXS.T C3L-01971 PDA WXS tumor CPT0108930009_1 CPT0108930009_1.WholeExome.RP-1303.bam 61961316294 BAM submitted_aligned CPTAC3 840525a9-c7d6-4055-acf2-192737318c58 0bf7729754fef695449863bd806e3e01 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.WXS.T C3L-01971 PDA WXS tumor CPT0108930009 CPT0108930009.WholeExome.RP-1303.bam 36411365774 BAM submitted_aligned CPTAC3 064a0511-89ba-423f-95c8-f48d27de81d3 9453ad7a61c369304481cdb3a69d9359 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.WXS.T.hg38 C3L-01971 PDA WXS tumor CPT0108930009_1 9a04e944-5951-497c-ba61-38fb9e5ca2a3_wxs_gdc_realn.bam 84116389220 BAM harmonized CPTAC3 4b877c78-cb6e-45b3-acf9-c5eb6ea1d9e6 0a7b6cbf876aef95eecf770aebd7eaf8 {"aliquot_tag": "ALQ_f384e91e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01971.WXS.T.hg38 C3L-01971 PDA WXS tumor CPT0108930009 bc19da78-4f82-4968-b4cc-826951d40d98_wxs_gdc_realn.bam 49265841421 BAM harmonized CPTAC3 fafd38cf-c1b0-446e-ac0b-4ba3d97983f5 bfd01e416e8d112c8a5a1124b5e51776 {"aliquot_tag": "ALQ_25209655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.MethArray.Green.A C3L-01976 CCRCC Methylation_Array tissue_normal CPT0109530006 204930630071_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ad69af07-961d-428a-9981-99835e28b454 5e5445ecd7b3b92f8448c85f4f983072 {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.MethArray.Green.T C3L-01976 CCRCC Methylation_Array tumor CPT0109500009 202234380058_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 df60cad6-f204-4ac5-943b-1994d8573676 b54e86387843c4b4b6773ba0c9d8c4a6 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.MethArray.Red.A C3L-01976 CCRCC Methylation_Array tissue_normal CPT0109530006 204930630071_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 46c339b7-fc6c-4032-9431-86fd5b167626 7ad347639958ae0a592f00143da461fe {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.MethArray.Red.T C3L-01976 CCRCC Methylation_Array tumor CPT0109500009 202234380058_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 1d636947-9e6c-4cc4-bb1e-1ce2b9e2735f 9039027bb5470489dffd4df1ee9bb426 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.miRNA-Seq.A.hg38 C3L-01976 CCRCC miRNA-Seq tissue_normal CPT0109530009 435ef1e6-d700-4c20-b73f-c512c5f66db7_mirnaseq_gdc_realn.bam 314882085 BAM harmonized CPTAC3 b723d432-be91-458c-bb29-0a6b11f10671 19d8bbed1469a4554ec086384603d960 {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.miRNA-Seq.S41_L002_R1.A C3L-01976 CCRCC miRNA-Seq tissue_normal CPT0109530009 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 280822664 BAM S41_L002_R1 submitted_unaligned CPTAC3 28b103a1-4559-494a-a9ad-660fb967da61 19272522084494a1f6d29703a30e23c0 {"aliquot_tag": "ALQ_f4955d9a", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.miRNA-Seq.S41_L003_R1.T C3L-01976 CCRCC miRNA-Seq tumor CPT0109500006 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L003_R1_001.unaln.bam 255307578 BAM S41_L003_R1 submitted_unaligned CPTAC3 094999fb-a564-4e6e-a52f-20a79bad8349 5816f3d98d3069c15d14d747fe277bcb {"aliquot_tag": "ALQ_238a3adb", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.miRNA-Seq.T.hg38 C3L-01976 CCRCC miRNA-Seq tumor CPT0109500006 0e47b09a-d85a-44e4-b5f7-9d199b542f2b_mirnaseq_gdc_realn.bam 282240999 BAM harmonized CPTAC3 60a893cf-3482-497a-b92b-7007e806dcf6 f2c4a8013201aabd3fc83b6e2b27e0cb {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.RNA-Seq.chimeric.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.chimeric.gdc_realn.bam 37462774 BAM chimeric harmonized CPTAC3 5dd64d81-7997-47e6-a513-e74f33bcc79e 6155515e010059dea8b1263064eadd8c {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.RNA-Seq.chimeric.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.chimeric.gdc_realn.bam 72275246 BAM chimeric harmonized CPTAC3 657baab4-fa64-4c8d-bf19-2ae4a3af5101 484504fcd861568087c19675a4a2b16d {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.RNA-Seq.genomic.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.genomic.gdc_realn.bam 9213999713 BAM genomic harmonized CPTAC3 45ced5be-a2ac-422f-a26b-ebbf0ef14207 cecce13600e89aff8e7964c4ac28f327 {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.RNA-Seq.genomic.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.genomic.gdc_realn.bam 7882694965 BAM genomic harmonized CPTAC3 44b9d533-a8bd-4d9b-9be2-adba7c1a6dc3 93a8e82ab3445511a8776dd4c6788b4f {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.RNA-Seq.S23_L006_R1.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R1_001.fastq.gz 3691412699 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 b3250e07-0bc6-42c7-a8dd-02fb49cf327f f52874ecf094b15e3cb14f17c4f39317 {"aliquot_tag": "ALQ_238a3adb", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.RNA-Seq.S23_L006_R2.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R2_001.fastq.gz 4047054751 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 f25a7b5e-7268-4eb4-84ae-4692e3c8d1ea a39d6ea2286eddbf62e0318ac8e4053d {"aliquot_tag": "ALQ_238a3adb", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.RNA-Seq.S3_L007_R1.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 4344531327 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 267560c1-339b-41b6-98b4-64fc6f6d3b32 1dce5f8585059c68f9a258fa2ce16ee1 {"aliquot_tag": "ALQ_f4955d9a", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.RNA-Seq.S3_L007_R2.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4730697904 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 7a9e9a56-7d15-4694-b96f-7ccd5e6047a7 2078a0b99bf23876074f75dd80aa7369 {"aliquot_tag": "ALQ_f4955d9a", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.RNA-Seq.transcriptome.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.transcriptome.gdc_realn.bam 11387371805 BAM transcriptome harmonized CPTAC3 5904465d-07e9-4d4f-a61c-e9ab238000ca 3297fa724515742efc03502dff4874fe {"aliquot_tag": "ALQ_f4955d9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.RNA-Seq.transcriptome.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.transcriptome.gdc_realn.bam 10021089163 BAM transcriptome harmonized CPTAC3 99e50577-26de-4fe6-828f-deaab4d20227 9465981924449a0c9bce7e047302d71a {"aliquot_tag": "ALQ_238a3adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.WGS.A C3L-01976 CCRCC WGS tissue_normal CPT0109530006 CPT0109530006.WholeGenome.RP-1303.bam 61506261562 BAM submitted_aligned CPTAC3 7c299825-c1cf-49bf-9650-0b3eb9f58f57 9d5e191b85278ec98aa886ff2acfc04d {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.WGS.A.hg38 C3L-01976 CCRCC WGS tissue_normal CPT0109530006 efd244f3-df56-42d6-bd3c-5450de8d34d2_wgs_gdc_realn.bam 89284417837 BAM harmonized CPTAC3 43d6f523-0230-49a2-8251-2177d23678c8 e48490c84a586d020c9dca3c003ed8ff {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.WGS.N C3L-01976 CCRCC WGS blood_normal CPT0108370002 CPT0108370002.WholeGenome.RP-1303.bam 54539482360 BAM submitted_aligned CPTAC3 5d4b7ca8-6f78-4e4e-8d67-da3551f19794 0d1ad833c36be03acf8b3120049af3cf {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01976.WGS.N.hg38 C3L-01976 CCRCC WGS blood_normal CPT0108370002 ab15bc51-38bc-48e9-a7e0-0eff0ea0b193_wgs_gdc_realn.bam 79226057036 BAM harmonized CPTAC3 eaef90be-e8f9-4d83-9d1d-80d58722df04 0fbbf547bcf8ac2805d67280b6f7ca63 {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01976.WGS.T C3L-01976 CCRCC WGS tumor CPT0109500009 CPT0109500009.WholeGenome.RP-1303.bam 66873289818 BAM submitted_aligned CPTAC3 4b42962e-d5ef-4f2d-9f4a-f2b1bf20ea48 3b6ced6591848f7e17396c6eeed58b07 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.WGS.T.hg38 C3L-01976 CCRCC WGS tumor CPT0109500009 b4417085-0f60-4be4-8863-aed4c91e929a_wgs_gdc_realn.bam 98551827815 BAM harmonized CPTAC3 59fe693a-b558-4aa3-8e93-524279abe773 4aa37fd59a074b33770f94f31aed53a3 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.WXS.A C3L-01976 CCRCC WXS tissue_normal CPT0109530006 CPT0109530006.WholeExome.RP-1303.bam 31998837806 BAM submitted_aligned CPTAC3 e431bb6c-f644-40d8-bfdf-97c776ccd67e 11b8c27be227b8a4845a2349a3c5480e {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.WXS.A.hg38 C3L-01976 CCRCC WXS tissue_normal CPT0109530006 efd244f3-df56-42d6-bd3c-5450de8d34d2_wxs_gdc_realn.bam 44581154421 BAM harmonized CPTAC3 e0aae0de-b507-4bcd-a983-d53cde0496e7 4e16500dc2455e5a56af8188413e1047 {"aliquot_tag": "ALQ_642a400b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01976.WXS.N C3L-01976 CCRCC WXS blood_normal CPT0108370002 CPT0108370002.WholeExome.RP-1303.bam 37151772775 BAM submitted_aligned CPTAC3 4a6946a9-477c-46ab-be34-c95052e57c3f 19c911d86e4c74c6f84dc039dae940db {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01976.WXS.N.hg38 C3L-01976 CCRCC WXS blood_normal CPT0108370002 ab15bc51-38bc-48e9-a7e0-0eff0ea0b193_wxs_gdc_realn.bam 51325964618 BAM harmonized CPTAC3 090e6f43-0f8d-421b-98cd-70ebde1573cc 21ecd3f70ecfddff3be704bad8786e4e {"aliquot_tag": "ALQ_e6e9ca7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01976.WXS.T C3L-01976 CCRCC WXS tumor CPT0109500009 CPT0109500009.WholeExome.RP-1303.bam 39452809913 BAM submitted_aligned CPTAC3 5c68a215-39b6-4e79-bcb1-b89590ae9381 550a0e6099edc3ce9b1b77d36818b76d {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01976.WXS.T.hg38 C3L-01976 CCRCC WXS tumor CPT0109500009 b4417085-0f60-4be4-8863-aed4c91e929a_wxs_gdc_realn.bam 53778951363 BAM harmonized CPTAC3 ff3a4653-7af8-4f81-af13-a56e420438ac 334432833ca3c09a7c6eab0b8fd648b6 {"aliquot_tag": "ALQ_b335274a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.MethArray.Green.A C3L-01978 CCRCC Methylation_Array tissue_normal CPT0125660006 204930630034_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a04a7bc5-cf67-4e2a-9c2c-6d52f7dd984c bef4af59fd78f51124dd481164685ce5 {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.MethArray.Green.T C3L-01978 CCRCC Methylation_Array tumor CPT0125620007 203219720211_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a0340940-c79f-4488-8676-2b7c0abc5ea6 38a8955e58f0074c1dd4ac67a9dd426d {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.MethArray.Red.A C3L-01978 CCRCC Methylation_Array tissue_normal CPT0125660006 204930630034_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 390ea357-f6d4-46c5-83f4-c39944d71315 23ebec007b1705385468f91fe7b9f746 {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.MethArray.Red.T C3L-01978 CCRCC Methylation_Array tumor CPT0125620007 203219720211_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 3f6f9673-8880-4e6d-9484-2ce31d180edd 98829e3b54e5ddfca18998944388e06a {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.miRNA-Seq.A.hg38 C3L-01978 CCRCC miRNA-Seq tissue_normal CPT0125660009 de604bf7-e7a3-4170-a30f-a7af5cb79e5d_mirnaseq_gdc_realn.bam 221505679 BAM harmonized CPTAC3 1808f412-3e50-488e-b564-f3c3b0cde43b 56382ee3f8f97a67a3ba532f30d6b283 {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.miRNA-Seq.S11_L004_R1.T C3L-01978 CCRCC miRNA-Seq tumor CPT0125620010 190108_UNC31-K00269_0176_AHYGLVBBXX_GGCTAC_S11_L004_R1_001.unaln.bam 272069745 BAM S11_L004_R1 submitted_unaligned CPTAC3 e78076a7-62a8-4e9f-b780-86dd0c4ee7dc 4bc0767924078b5eaafc110293667972 {"aliquot_tag": "ALQ_aa23e268", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.miRNA-Seq.S18_L002_R1.A C3L-01978 CCRCC miRNA-Seq tissue_normal CPT0125660009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L002_R1_001.unaln.bam 202843613 BAM S18_L002_R1 submitted_unaligned CPTAC3 83ace193-77a0-43e7-ad7c-eb3bf2c4d568 eaeae8c7fec5c76a23a060ee520c7c21 {"aliquot_tag": "ALQ_3f64cd4d", "sample": "S18", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.miRNA-Seq.T.hg38 C3L-01978 CCRCC miRNA-Seq tumor CPT0125620010 142a5f7e-4684-4297-be81-8a9910d8632e_mirnaseq_gdc_realn.bam 305255760 BAM harmonized CPTAC3 40655f76-9397-44b3-b54f-5bbedc49642c f2344f094266f08556c4e6414fb45882 {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.RNA-Seq.chimeric.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.chimeric.gdc_realn.bam 113294334 BAM chimeric harmonized CPTAC3 e94c42e3-5161-4428-8f8d-a60940758216 871c2b680b7ecd29224f391b7f079eba {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.RNA-Seq.chimeric.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.chimeric.gdc_realn.bam 131803739 BAM chimeric harmonized CPTAC3 92d98c67-0bf6-46bf-9555-3e9591d0747b 851147de18e2cf5868f06254c3c510fa {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.RNA-Seq.genomic.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.genomic.gdc_realn.bam 10058073545 BAM genomic harmonized CPTAC3 07f14926-7ba4-4b45-93c9-4d727976932c f784b30ae3e9fca0a489c5541c1c41c9 {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.RNA-Seq.genomic.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.genomic.gdc_realn.bam 8517179899 BAM genomic harmonized CPTAC3 56f7d745-20aa-4d05-9bb1-5a5b43b7e73a f65ecd8d5cd134e19cf6ea5372bea941 {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.RNA-Seq.S17_L007_R1.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R1_001.fastq.gz 4460922507 FASTQ S17_L007_R1 submitted_unaligned CPTAC3 a2c04b44-bb70-4906-8b11-c4f786a3b3f8 7a979f05a9520bf0f46ee6b9252efac8 {"aliquot_tag": "ALQ_3f64cd4d", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.RNA-Seq.S17_L007_R2.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R2_001.fastq.gz 4895935748 FASTQ S17_L007_R2 submitted_unaligned CPTAC3 38933543-6714-41fb-9689-2cfbb8a1a0ae 66c54ba685e6cc926b0647597c66ff95 {"aliquot_tag": "ALQ_3f64cd4d", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.RNA-Seq.S1_L001_R1.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3819803528 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 2b31b66f-409d-46bd-8dbb-b15fac6a8758 9fc76f5f0164e5c83794db8b35d39d59 {"aliquot_tag": "ALQ_aa23e268", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.RNA-Seq.S1_L001_R2.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4399810119 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 f3b47899-289b-4f3a-9f10-c3c5120bb9b7 91482be9a190429f6f0ebbd8f633f97c {"aliquot_tag": "ALQ_aa23e268", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.RNA-Seq.transcriptome.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.transcriptome.gdc_realn.bam 10978742330 BAM transcriptome harmonized CPTAC3 2d26873c-ecb1-4665-8ea5-0ddd7f03f6bb 9af01096f4f97d03e1b762147fc37ca3 {"aliquot_tag": "ALQ_3f64cd4d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.RNA-Seq.transcriptome.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.transcriptome.gdc_realn.bam 9935084661 BAM transcriptome harmonized CPTAC3 91c336d3-72b6-4b0d-9756-2057bf9c260a d4ca7d01dbfe603fb5eb60b9bc606c0b {"aliquot_tag": "ALQ_aa23e268", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.WGS.A C3L-01978 CCRCC WGS tissue_normal CPT0125660006 CPT0125660006.WholeGenome.RP-1303.bam 58720387517 BAM submitted_aligned CPTAC3 274d285c-e32e-4527-91e1-7f356cec8e1e 5967bc9dfa0acfdbdc1b4573dfdf325d {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.WGS.A.hg38 C3L-01978 CCRCC WGS tissue_normal CPT0125660006 35b30ca5-34d6-493c-b5e4-732210bd3650_wgs_gdc_realn.bam 83589696983 BAM harmonized CPTAC3 3453c2e7-e52f-40d4-a11c-e11bb52cd27c dfa0fbf79c3e729d70f36014623c61df {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.WGS.N C3L-01978 CCRCC WGS blood_normal CPT0124260002 CPT0124260002.WholeGenome.RP-1303.bam 61569685388 BAM submitted_aligned CPTAC3 4adc358c-5dd2-4d67-a2dc-cf6cb5920d87 34d3cddc2709bc5e44124692247b71a7 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01978.WGS.N.hg38 C3L-01978 CCRCC WGS blood_normal CPT0124260002 d3c7ef1e-8ca2-458d-bbe1-08c9be2d33c9_wgs_gdc_realn.bam 89017386053 BAM harmonized CPTAC3 855e6376-eac5-4ed4-9276-ae6763fc9359 507db13839d838a44430962268229b55 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01978.WGS.T C3L-01978 CCRCC WGS tumor CPT0125620007 CPT0125620007.WholeGenome.RP-1303.bam 49162760412 BAM submitted_aligned CPTAC3 05897f56-2050-4750-8dc3-30f727f9f32e b49951f077b31cf93d2dc7424b571030 {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.WGS.T.hg38 C3L-01978 CCRCC WGS tumor CPT0125620007 0c1c2a5e-1bcd-477f-8f3d-0a9493fff631_wgs_gdc_realn.bam 71356471541 BAM harmonized CPTAC3 97ff763d-d813-46ba-bc51-02a874fee3c8 8baf9b7cb65a2a618c07058fafea4bae {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.WXS.A C3L-01978 CCRCC WXS tissue_normal CPT0125660006 CPT0125660006.WholeExome.RP-1303.bam 26288364696 BAM submitted_aligned CPTAC3 e13a258a-5ff3-4891-9d6d-0de08c4a4ac0 6d9f94fea687613d4348b1915fa865ed {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.WXS.A.hg38 C3L-01978 CCRCC WXS tissue_normal CPT0125660006 35b30ca5-34d6-493c-b5e4-732210bd3650_wxs_gdc_realn.bam 36179796339 BAM harmonized CPTAC3 a0a121c5-6889-4bce-ba6b-faa8f1aea5b3 4da1111b3b18e0027d923d4bae9bda5d {"aliquot_tag": "ALQ_afdbd0dc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-01978.WXS.N C3L-01978 CCRCC WXS blood_normal CPT0124260002 CPT0124260002.WholeExome.RP-1303.bam 24849696567 BAM submitted_aligned CPTAC3 9103376d-be27-4e5c-81d3-aad67b724005 b713df418a0a52431271316b91c6c1a4 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01978.WXS.N.hg38 C3L-01978 CCRCC WXS blood_normal CPT0124260002 d3c7ef1e-8ca2-458d-bbe1-08c9be2d33c9_wxs_gdc_realn.bam 34353940480 BAM harmonized CPTAC3 115c9a39-1093-40e6-9cf8-d346e7b40c5f e34cfb22f2481a9fafaa3bb31e1a2d35 {"aliquot_tag": "ALQ_95505d67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-01978.WXS.T C3L-01978 CCRCC WXS tumor CPT0125620007 CPT0125620007.WholeExome.RP-1303.bam 21060408848 BAM submitted_aligned CPTAC3 f6343e42-44ac-4d58-8644-fb94a67fefb0 3e0d9ff19333f97f51fe8e5378eb08dd {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01978.WXS.T.hg38 C3L-01978 CCRCC WXS tumor CPT0125620007 0c1c2a5e-1bcd-477f-8f3d-0a9493fff631_wxs_gdc_realn.bam 29003463196 BAM harmonized CPTAC3 8071b698-5b98-4cfa-8d0d-f101ad2da860 4e678feef5e9879fd6a8c77ad6d42181 {"aliquot_tag": "ALQ_2d5c468a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.MethArray.Green.T C3L-02041 GBM Methylation_Array tumor CPT0125510009 203273200110_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 79158a18-f3c0-4aac-aee2-3184f882c7c2 6c570878bbae57bf42b3db1ed69fca97 {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.MethArray.Red.T C3L-02041 GBM Methylation_Array tumor CPT0125510009 203273200110_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 c6db8273-09b4-4f2e-bc85-8e4138d9ac97 15474172fd83723e9b46c61c92ad53ab {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.miRNA-Seq.S39_L004_R1.T C3L-02041 GBM miRNA-Seq tumor CPT0125510006 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L004_R1_001.unaln.bam 265035362 BAM S39_L004_R1 submitted_unaligned CPTAC3 e5f84412-2221-4c91-bcca-a7e10b553632 aea1ffffb6d3cd25402b3a9247d94a58 {"aliquot_tag": "ALQ_9b6f7e62", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.miRNA-Seq.T.hg38 C3L-02041 GBM miRNA-Seq tumor CPT0125510006 4a05c2ea-890d-45e3-8dce-4be90e5d3022_mirnaseq_gdc_realn.bam 298015066 BAM harmonized CPTAC3 3b853de2-35ca-4b89-ab96-be5b7124109a ae8b05eb1a785ce53bf5ce3b646c5366 {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.RNA-Seq.chimeric.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.chimeric.gdc_realn.bam 48349366 BAM chimeric harmonized CPTAC3 4a6a0511-42fc-42a4-a02b-90874930631f 9c5d87cb973d01e82c1177c697addd82 {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.RNA-Seq.genomic.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.genomic.gdc_realn.bam 8188525949 BAM genomic harmonized CPTAC3 c4d214c0-723f-4355-b575-c1aeb2f1412f 148f54a129fe4071efc457fada973f3f {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.RNA-Seq.S17_L005_R1.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R1_001.fastq.gz 3831582154 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 1da7dff2-8bad-4a10-9b89-de71e20efb67 a22616c520d16f04a41ffcb4de597709 {"aliquot_tag": "ALQ_9b6f7e62", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.RNA-Seq.S17_L005_R2.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R2_001.fastq.gz 4207462558 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 5bb2b2d1-b7a2-4028-84bd-0b8603028e4b be84a670ab034caed2ea0452c546e5ec {"aliquot_tag": "ALQ_9b6f7e62", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.RNA-Seq.transcriptome.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.transcriptome.gdc_realn.bam 8390028143 BAM transcriptome harmonized CPTAC3 6a87434c-8d6a-4d34-b925-416d8800d219 a717b85d45fae4eea156e54f82299d71 {"aliquot_tag": "ALQ_9b6f7e62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.WGS.N C3L-02041 GBM WGS blood_normal CPT0124240002 CPT0124240002.WholeGenome.RP-1303.bam 56509025370 BAM submitted_aligned CPTAC3 985fcf02-2005-4781-afb7-fbe2e5c0ed20 e595372c2461e93aeed76ead0f945b8b {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02041.WGS.N.hg38 C3L-02041 GBM WGS blood_normal CPT0124240002 413408c0-fdd9-4e15-85da-132bfe999cb2_wgs_gdc_realn.bam 82504136941 BAM harmonized CPTAC3 5e4208c9-c462-4b08-8e72-a5842dae8f86 e459941c3ce01efe495bbb498cc36efa {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02041.WGS.T C3L-02041 GBM WGS tumor CPT0125510009 CPT0125510009.WholeGenome.RP-1303.bam 66143376831 BAM submitted_aligned CPTAC3 919c7df1-4f22-414e-a282-be607f711f01 7b16a36bc02e5c2b555038dd26408689 {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.WGS.T.hg38 C3L-02041 GBM WGS tumor CPT0125510009 e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wgs_gdc_realn.bam 96364360840 BAM harmonized CPTAC3 b5a9cb82-9dba-4166-ac51-13c08ab9bb23 5c5852bb7d309f57a0dfec13c2c2a46d {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.WXS.N C3L-02041 GBM WXS blood_normal CPT0124240002 CPT0124240002.WholeExome.RP-1303.bam 32194046670 BAM submitted_aligned CPTAC3 b6efe144-59e9-4b34-ae37-a40b15756890 674c8024136c90b966396664a23a350f {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02041.WXS.N.hg38 C3L-02041 GBM WXS blood_normal CPT0124240002 413408c0-fdd9-4e15-85da-132bfe999cb2_wxs_gdc_realn.bam 43967043277 BAM harmonized CPTAC3 f9e7a4d9-9f89-495b-9db9-502200a26d09 96f8add96545e56f76e69cf5acf546ea {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02041.WXS.T C3L-02041 GBM WXS tumor CPT0125510009 CPT0125510009.WholeExome.RP-1303.bam 40627967636 BAM submitted_aligned CPTAC3 bc28db96-ebdf-4abd-b7ef-eae25253aa77 b878d73dab800cfca228b98e37bea62e {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02041.WXS.T.hg38 C3L-02041 GBM WXS tumor CPT0125510009 e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wxs_gdc_realn.bam 55570315591 BAM harmonized CPTAC3 b9073c62-2ed2-4bfe-8ecc-154068508194 460ea9bafc0811bfa41a621332f18a6d {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.MethArray.Green.T C3L-02109 PDA Methylation_Array tumor CPT0109010010 203028200014_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dfb41a80-435f-4a0a-9645-d0bd560b9f4e 78938de5ed3e11063e914ff9e482325c {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.MethArray.Red.T C3L-02109 PDA Methylation_Array tumor CPT0109010010 203028200014_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 bd0493ee-c227-4a7a-996c-786526f7918d 1fb3ed571fbe29a95efb4aacde8f7804 {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.miRNA-Seq.S33_L004_R1.T C3L-02109 PDA miRNA-Seq tumor CPT0109010007 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L004_R1_001.unaln.bam 220206075 BAM S33_L004_R1 submitted_unaligned CPTAC3 714a8d2c-00e4-41f2-b7ab-97e83963f5e4 b5e95c879717e9cf666c94d8a6c1f66a {"aliquot_tag": "ALQ_3920b24e", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.miRNA-Seq.T.hg38 C3L-02109 PDA miRNA-Seq tumor CPT0109010007 36fd5dcf-c8e1-4a17-88fd-d0f54b250cf9_mirnaseq_gdc_realn.bam 247619653 BAM harmonized CPTAC3 e54bcfa0-9eb7-4075-9fc4-ea86be5a1b72 64361a773ca51c7d71653d50fb2e0529 {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.RNA-Seq.chimeric.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.chimeric.gdc_realn.bam 45036488 BAM chimeric harmonized CPTAC3 9a4cfce6-d21f-4f31-a075-dbf068e104d1 1c24dc9d7435f918224f22d22b90542c {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.genomic.gdc_realn.bam 7204774029 BAM genomic harmonized CPTAC3 e3bd1a3a-62c0-4733-94b3-4f703d09793f 72bc09f145f91931f9c6ed4080943c84 {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.RNA-Seq.S4_L006_R1.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R1_001.fastq.gz 3150820705 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 0143fe73-deea-484e-8fd5-6bdf9fd73640 d8156845d50e4fe92caa41161ec526b1 {"aliquot_tag": "ALQ_3920b24e", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.RNA-Seq.S4_L006_R2.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R2_001.fastq.gz 3461729862 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 02819eb9-c422-4438-a0b7-44bbfbb1bec0 2cc7acf9123b68eaa1c05690fdff3928 {"aliquot_tag": "ALQ_3920b24e", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.RNA-Seq.transcriptome.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.transcriptome.gdc_realn.bam 8329425662 BAM transcriptome harmonized CPTAC3 a1a6b0bb-0dcc-466c-878f-bbf904d8b9d4 0f73ab853aec13006f1f8fdd0842ee5e {"aliquot_tag": "ALQ_3920b24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.Targeted.T C3L-02109 PDA Targeted_Sequencing tumor CPT0109010010_1 CPT0109010010_1.CustomSelection.RP-1303.PDO-18786.bam 4426058308 BAM submitted_aligned CPTAC3 4c280297-e9c2-42ae-9f98-c6e6d91a53a5 6351fd8a1e97bb31b88defe1d76dbda3 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.Targeted.T.hg38 C3L-02109 PDA Targeted_Sequencing tumor CPT0109010010_1 f3517079-507e-475a-9fd1-b355d59be341_targetedsequencing_gdc_realn.bam 6203999862 BAM harmonized CPTAC3 9dee973f-9a14-4a81-942d-259632ee75cc ac848ec9d99ed3d2d8eea18f3f653f68 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.WGS.N C3L-02109 PDA WGS blood_normal CPT0109040002 CPT0109040002.WholeGenome.RP-1303.bam 56637976369 BAM submitted_aligned CPTAC3 abf92be9-5662-4ba3-b668-861eb6136ff4 d1f2fa29faf8a060ca4223f7268d5f9e {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02109.WGS.N.hg38 C3L-02109 PDA WGS blood_normal CPT0109040002 c38b9acb-52d8-4fd9-8ee7-2e4ac8175fcc_wgs_gdc_realn.bam 83298578297 BAM harmonized CPTAC3 9d00e599-0b48-4775-b3aa-746c0bafe349 c2a5db840506d17c7d872d74c3a3c850 {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02109.WGS.T C3L-02109 PDA WGS tumor CPT0109010010 CPT0109010010.WholeGenome.RP-1303.bam 61141379630 BAM submitted_aligned CPTAC3 4aa2671f-f84c-457e-8c65-a8ab15e04770 b47a0d9eff8aaf0a7c3bc44837d2157b {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.WGS.T.hg38 C3L-02109 PDA WGS tumor CPT0109010010 ce17f9d1-748e-4d5e-a4bc-031ea3ea0291_wgs_gdc_realn.bam 88656281572 BAM harmonized CPTAC3 d241dea6-9bc0-4a63-9d58-3390f4287e7b 319221d494d47547066d13a43da88a47 {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.WXS.N C3L-02109 PDA WXS blood_normal CPT0109040002 CPT0109040002.WholeExome.RP-1303.bam 25258775197 BAM submitted_aligned CPTAC3 21dbc454-2918-4685-a1fd-502c22e2d7ac b0bd38512c5e299e6459f80461de111a {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02109.WXS.N.hg38 C3L-02109 PDA WXS blood_normal CPT0109040002 c38b9acb-52d8-4fd9-8ee7-2e4ac8175fcc_wxs_gdc_realn.bam 33521438633 BAM harmonized CPTAC3 3af84bd1-f6a6-4024-addb-6000472700c1 a8878ee3995e984b709754888abd931b {"aliquot_tag": "ALQ_81aac9b1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02109.WXS.T C3L-02109 PDA WXS tumor CPT0109010010_1 CPT0109010010_1.WholeExome.RP-1303.bam 49545726309 BAM submitted_aligned CPTAC3 a0c829f5-3e9b-4a9b-a64f-98fd4b8ff7ca 88219f07464458afc83019f9b5d28707 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.WXS.T C3L-02109 PDA WXS tumor CPT0109010010 CPT0109010010.WholeExome.RP-1303.bam 20841707975 BAM submitted_aligned CPTAC3 31c3e690-5713-44ee-85f5-d743db10bfbf 341173f96cbe210b7a7c72f5546fc16d {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.WXS.T.hg38 C3L-02109 PDA WXS tumor CPT0109010010_1 f3517079-507e-475a-9fd1-b355d59be341_wxs_gdc_realn.bam 67713192099 BAM harmonized CPTAC3 4de48751-0ef3-49a4-8f1e-8100f28f6859 2db8f7c8d4bc38851550cfa6405db9a7 {"aliquot_tag": "ALQ_db42abb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02109.WXS.T.hg38 C3L-02109 PDA WXS tumor CPT0109010010 ce17f9d1-748e-4d5e-a4bc-031ea3ea0291_wxs_gdc_realn.bam 28266730503 BAM harmonized CPTAC3 dcd7888d-9b18-4db5-8167-75cae4b4d0e9 6d1be9b1222a859da56614c7eae0082d {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.MethArray.Green.A C3L-02112 PDA Methylation_Array tissue_normal CPT0124430011 203561620064_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 90aad1ed-9609-463c-a103-cf01b5a256c1 33757a9f3b265090707493e94ca7f2b0 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.MethArray.Green.T C3L-02112 PDA Methylation_Array tumor CPT0124410007 203028200023_R08C01_Grn.idat 13676229 IDAT Green NA CPTAC3 6f5f39d4-1e79-4a60-9afb-e85866b9f328 fff362f93595ef850d6fda29483b8cca {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.MethArray.Red.A C3L-02112 PDA Methylation_Array tissue_normal CPT0124430011 203561620064_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 01568ef5-bb13-49e9-a85a-af3ff2b739de 9753d650ea5e6392ab2e2ca7313541d8 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.MethArray.Red.T C3L-02112 PDA Methylation_Array tumor CPT0124410007 203028200023_R08C01_Red.idat 13676229 IDAT Red NA CPTAC3 8ffcf38b-5769-44da-a5ba-31dd4d45d547 612a07bdf5ebdefacc21e4165f4a7295 {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.miRNA-Seq.A.hg38 C3L-02112 PDA miRNA-Seq tissue_normal CPT0124430008 6020dd97-e5da-4d02-87f5-bee7f09de2db_mirnaseq_gdc_realn.bam 215799276 BAM harmonized CPTAC3 744524ab-3e96-4b9c-943f-0176c138696f 8f2c760967f703d62420c59ed1343664 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.miRNA-Seq.S16_L001_R1.A C3L-02112 PDA miRNA-Seq tissue_normal CPT0124430008 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 191093849 BAM S16_L001_R1 submitted_unaligned CPTAC3 950cbff0-7545-434d-8600-1b77ded10a8b d2bf50bafa95146a088544eb070f50df {"aliquot_tag": "ALQ_6b3cd814", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.miRNA-Seq.S35_L002_R1.T C3L-02112 PDA miRNA-Seq tumor CPT0124410010 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 209343639 BAM S35_L002_R1 submitted_unaligned CPTAC3 aecfbf98-4320-4605-a744-971c2b5e44a0 5b8890a8b145332be3a827a3ecd7097c {"aliquot_tag": "ALQ_63c3207", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.miRNA-Seq.T.hg38 C3L-02112 PDA miRNA-Seq tumor CPT0124410010 811ef88c-9863-4dc9-8e02-4f229ef9f96f_mirnaseq_gdc_realn.bam 235270543 BAM harmonized CPTAC3 dc021f94-7b2d-47af-a1d2-3c288f548229 0d38244f88317c6553013b9296e83fb6 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.RNA-Seq.chimeric.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.chimeric.gdc_realn.bam 112253047 BAM chimeric harmonized CPTAC3 20aac09e-d950-4f10-bc3a-1dc38be8c611 91a1d05c38250e4c8d5f3b6f7e6db540 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.RNA-Seq.chimeric.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.chimeric.gdc_realn.bam 99870007 BAM chimeric harmonized CPTAC3 578ba582-18de-4278-a9ca-659c9c32e1c7 902164d47b0353a84ce6b8199cbe94a6 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.RNA-Seq.genomic.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.genomic.gdc_realn.bam 9543308198 BAM genomic harmonized CPTAC3 7f2da68c-f986-46f5-9c89-d435bae29878 b2b6733ecc74480142bd3648f5bedce5 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.RNA-Seq.genomic.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.genomic.gdc_realn.bam 9669088708 BAM genomic harmonized CPTAC3 2c2c40e8-d8b7-4922-8c32-d50a6924d099 d6a83ec6df4456dc3fb5960c557491b7 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.RNA-Seq.S17_L005_R1.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 4315806975 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 574ea695-bb46-4fc7-9680-7ffd773b2f72 24b98ae5234da1298fe1b74a838f0b6c {"aliquot_tag": "ALQ_6b3cd814", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.RNA-Seq.S17_L005_R2.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 4552166247 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 f612c15d-b0a2-48aa-8ed7-af9e12408f94 b2ebe85adc4da144678d7a3bf5fbb923 {"aliquot_tag": "ALQ_6b3cd814", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.RNA-Seq.S6_L002_R1.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R1_001.fastq.gz 4221573662 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 3450378b-d704-4637-b48b-acf54fd1485b 9ff705383fafc759ded658b2cc5d9af3 {"aliquot_tag": "ALQ_63c3207", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.RNA-Seq.S6_L002_R2.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R2_001.fastq.gz 4746498476 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 2d971539-16b6-4ea0-8290-7af54175280c c4123b5fc102de1fec32cda07076df38 {"aliquot_tag": "ALQ_63c3207", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.RNA-Seq.transcriptome.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.transcriptome.gdc_realn.bam 11430455793 BAM transcriptome harmonized CPTAC3 adce7cb8-a6c3-4546-aebb-3ff8143de5a0 56324553978006e4d19aac73960c5214 {"aliquot_tag": "ALQ_6b3cd814", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.RNA-Seq.transcriptome.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.transcriptome.gdc_realn.bam 11871501094 BAM transcriptome harmonized CPTAC3 f111b1ce-7b2d-47c8-acf8-ce30d8153410 7d4fc6342c5a7d41d906997a9d245875 {"aliquot_tag": "ALQ_63c3207", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.Targeted.T C3L-02112 PDA Targeted_Sequencing tumor CPT0124410007_1 CPT0124410007_1.CustomSelection.RP-1303.PDO-18786.bam 5456931630 BAM submitted_aligned CPTAC3 ef77fe0e-d225-4af8-8388-7cfa9219301a afcca643a40c9237446821074084fa32 {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.Targeted.T.hg38 C3L-02112 PDA Targeted_Sequencing tumor CPT0124410007_1 336738ee-9add-4799-8fed-16489f9792e4_targetedsequencing_gdc_realn.bam 7582470024 BAM harmonized CPTAC3 4486247e-7572-444c-871f-2afca0664cfd 1ea517a396138803ee82ee56f659bc0e {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.WGS.A C3L-02112 PDA WGS tissue_normal CPT0124430011 CPT0124430011.WholeGenome.RP-1303.bam 61066549973 BAM submitted_aligned CPTAC3 cfef31d6-8355-437a-aae6-5b6a4789f5b4 f322ee5d63eb248d5b6abe94d3c12dd0 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.WGS.A.hg38 C3L-02112 PDA WGS tissue_normal CPT0124430011 950a0e79-88ac-4d32-b1c3-ad47c68422f2_wgs_gdc_realn.bam 88958552201 BAM harmonized CPTAC3 0d670d40-cbf3-4042-95b7-4929bbb370da eb77d8974133f5c6b9cfba2b247f2fff {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.WGS.N C3L-02112 PDA WGS blood_normal CPT0124440002 CPT0124440002.WholeGenome.RP-1303.bam 54427953706 BAM submitted_aligned CPTAC3 d52d31c0-2ee1-4284-b8a4-88b782b3eafe 5be2dd7d100323597cca6641486a9c2b {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02112.WGS.N.hg38 C3L-02112 PDA WGS blood_normal CPT0124440002 3703f210-c6e8-4a95-bf68-bd1ad882b248_wgs_gdc_realn.bam 79077026174 BAM harmonized CPTAC3 06d11f16-218f-4694-a3d2-dcde95df7cc1 7c2da4ab6190a82b71996e6baff4f57f {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02112.WGS.T C3L-02112 PDA WGS tumor CPT0124410007 CPT0124410007.WholeGenome.RP-1303.bam 68303889254 BAM submitted_aligned CPTAC3 b1c069a0-fa00-46d9-9b40-f7a3b515ad60 859bda3c8977e1965cfa537a2dff866a {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.WGS.T.hg38 C3L-02112 PDA WGS tumor CPT0124410007 aaeec78e-a832-47ac-9eed-95f9f4e49890_wgs_gdc_realn.bam 99967840663 BAM harmonized CPTAC3 f6500cdd-1fb6-4ad7-8f36-52ea91cbb6da d40a3df4967a5b2ee1aada51dbd57cdb {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.WXS.A C3L-02112 PDA WXS tissue_normal CPT0124430011 CPT0124430011.WholeExome.RP-1303.bam 22752298033 BAM submitted_aligned CPTAC3 caa5d357-b20e-4f00-af3e-a65c8e64cf31 6fdeea0f0384e3cc0dfaf7337ceb5c1c {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.WXS.A.hg38 C3L-02112 PDA WXS tissue_normal CPT0124430011 950a0e79-88ac-4d32-b1c3-ad47c68422f2_wxs_gdc_realn.bam 31030604193 BAM harmonized CPTAC3 b0aa3d1e-133e-4f25-ba32-76899e2ff72d 0b5b71783f345b089528cc98ba74e343 {"aliquot_tag": "ALQ_bfb51f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02112.WXS.N C3L-02112 PDA WXS blood_normal CPT0124440002 CPT0124440002.WholeExome.RP-1303.bam 34869369271 BAM submitted_aligned CPTAC3 4fa02a6b-f0b7-4511-8736-72d1bd1cf400 26eae754f39cb8ad71a19dcd04db92a3 {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02112.WXS.N.hg38 C3L-02112 PDA WXS blood_normal CPT0124440002 3703f210-c6e8-4a95-bf68-bd1ad882b248_wxs_gdc_realn.bam 47158727938 BAM harmonized CPTAC3 4b5e32b3-4a94-46ad-99d0-145fa0930d9b da207e9e86a8d11cb506ca3dfa8ca74f {"aliquot_tag": "ALQ_39c9ed1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02112.WXS.T C3L-02112 PDA WXS tumor CPT0124410007_1 CPT0124410007_1.WholeExome.RP-1303.bam 49261502253 BAM submitted_aligned CPTAC3 17a27987-6867-41cd-8755-89366a5ded55 344eb2ecdf3b30ef52d15ab3e6569427 {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.WXS.T C3L-02112 PDA WXS tumor CPT0124410007 CPT0124410007.WholeExome.RP-1303.bam 24193728328 BAM submitted_aligned CPTAC3 ff36b18f-518f-4177-9f05-7fe9c02a4030 25bb5f55dbf60ee8d6308423b8de11a6 {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.WXS.T.hg38 C3L-02112 PDA WXS tumor CPT0124410007_1 336738ee-9add-4799-8fed-16489f9792e4_wxs_gdc_realn.bam 67051374873 BAM harmonized CPTAC3 1e1a3f35-07db-473d-b908-3a02e2247cb6 f1bab9f3018389c2394ad299b73e8637 {"aliquot_tag": "ALQ_1741e3c5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02112.WXS.T.hg38 C3L-02112 PDA WXS tumor CPT0124410007 aaeec78e-a832-47ac-9eed-95f9f4e49890_wxs_gdc_realn.bam 32571497520 BAM harmonized CPTAC3 39753220-4d9e-487b-ae86-b30c5e9bfa3e 7b547116ec24cd940fb7105d3c037aee {"aliquot_tag": "ALQ_814396e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.MethArray.Green.A C3L-02115 PDA Methylation_Array tissue_normal CPT0109130006 203561620159_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 975bef82-84b3-4b03-a0ab-dfdb94fbc972 dc688d16588d6f18c0fa78c23ff2ce9f {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02115.MethArray.Green.T C3L-02115 PDA Methylation_Array tumor CPT0109110012 203027390081_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 27f383a2-96b4-46b4-bef9-4716d1bc22d7 495f6b237f7c174b4a19a8eac86ff0ce {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.MethArray.Red.A C3L-02115 PDA Methylation_Array tissue_normal CPT0109130006 203561620159_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1d53a6a7-c3c1-416e-89a7-96507183a3f0 6b625f0bd74f6aa568b174144ae87a75 {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02115.MethArray.Red.T C3L-02115 PDA Methylation_Array tumor CPT0109110012 203027390081_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 327f444d-e70a-4aaa-9e88-412cbf93eb32 bd02ba291f5d5dfa884fd970202cd60f {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.miRNA-Seq.S34_L004_R1.T C3L-02115 PDA miRNA-Seq tumor CPT0109110007 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L004_R1_001.unaln.bam 251095764 BAM S34_L004_R1 submitted_unaligned CPTAC3 5c2de421-27da-4b6f-b5f1-e9d6591a75f5 118db2bdaa48372566e1d94101a37e13 {"aliquot_tag": "ALQ_f27c61eb", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.miRNA-Seq.T.hg38 C3L-02115 PDA miRNA-Seq tumor CPT0109110007 9036480e-0b70-4225-9958-2cd4b8047daa_mirnaseq_gdc_realn.bam 277355365 BAM harmonized CPTAC3 8bc99a91-dc76-4f7f-bbbd-78b3e40b0fbf 44bbfb11777b33efabf33edd54652b7c {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.RNA-Seq.chimeric.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.chimeric.gdc_realn.bam 34660769 BAM chimeric harmonized CPTAC3 2b7412fb-ef42-4102-bc41-f116c5e70167 0607dbe1d682c5a2ae5ec7030ff8e106 {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.RNA-Seq.genomic.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.genomic.gdc_realn.bam 10904557177 BAM genomic harmonized CPTAC3 54353d74-983f-4983-a9b5-d202935cd102 8d6017c23fccb5c6707e4129d351d4ed {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.RNA-Seq.S22_L006_R1.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R1_001.fastq.gz 4698507359 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 ed7a42f9-50e2-4d06-a6e5-beab067a59ea 7e5a67e118ae2fd4b85ea6c0df02f295 {"aliquot_tag": "ALQ_f27c61eb", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.RNA-Seq.S22_L006_R2.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R2_001.fastq.gz 5150077127 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 b0b93f1a-895c-4d8d-884f-0dbc09f12d23 a785ac4f5b3f7f80df99d922e12581bb {"aliquot_tag": "ALQ_f27c61eb", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.RNA-Seq.transcriptome.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.transcriptome.gdc_realn.bam 14649203886 BAM transcriptome harmonized CPTAC3 d19666b4-455f-4ea7-b25c-fd2eaccf0afd fe339709116cd1d6d98b7e4d27105be5 {"aliquot_tag": "ALQ_f27c61eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.WGS.A C3L-02115 PDA WGS tissue_normal CPT0109130006 CPT0109130006.WholeGenome.RP-1303.bam 54336516730 BAM submitted_aligned CPTAC3 09f9358c-b391-4d57-9d75-ed5f01740355 f13c38945f66dc1509e1fd1492796d8e {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02115.WGS.A.hg38 C3L-02115 PDA WGS tissue_normal CPT0109130006 2bec91ff-e669-4703-be26-6b2666ec0e5b_wgs_gdc_realn.bam 80297670525 BAM harmonized CPTAC3 6d55db3e-eac1-4349-b6c7-277469bec1fc e6534eef59139bd9a3531768fda8953c {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02115.WGS.N C3L-02115 PDA WGS blood_normal CPT0109140002 CPT0109140002.WholeGenome.RP-1303.bam 56774028684 BAM submitted_aligned CPTAC3 c50a6152-4221-4f27-91c4-4012ca031c59 22c89c98898ae7656ae8ad516f86661d {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02115.WGS.N.hg38 C3L-02115 PDA WGS blood_normal CPT0109140002 ee07d9ad-7e3e-475e-828b-e949994a32ee_wgs_gdc_realn.bam 83289381182 BAM harmonized CPTAC3 4cd1cde5-41f6-40bc-9ab6-8a99f48bf61c 668df90b0af9b6ba5df98c5686050d3b {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02115.WGS.T C3L-02115 PDA WGS tumor CPT0109110012 CPT0109110012.WholeGenome.RP-1303.bam 67259747287 BAM submitted_aligned CPTAC3 b8ea5716-276f-4ffc-9c28-bd89d3c9a851 6d7f08dd5bfa76303e2bec5516df4caf {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.WGS.T.hg38 C3L-02115 PDA WGS tumor CPT0109110012 15188d57-8f0a-4864-a5a7-df81b6ecc496_wgs_gdc_realn.bam 97097446413 BAM harmonized CPTAC3 bfe80275-f58c-4873-8361-b305d7815db9 8ab9f9b15942cb4bcf8cff0dcc8e2e25 {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.WXS.A C3L-02115 PDA WXS tissue_normal CPT0109130006 CPT0109130006.WholeExome.RP-1303.bam 30167228875 BAM submitted_aligned CPTAC3 2a21c93f-b958-4ae9-b469-4b8f8607f477 42102d25123b5222363488f4f0165fd9 {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02115.WXS.A.hg38 C3L-02115 PDA WXS tissue_normal CPT0109130006 2bec91ff-e669-4703-be26-6b2666ec0e5b_wxs_gdc_realn.bam 40270859359 BAM harmonized CPTAC3 c2db38d9-4da4-41ec-a299-1580323c1927 f2c4e208178cbc6c1a4bd6f50db83ac3 {"aliquot_tag": "ALQ_ffbb021d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02115.WXS.N C3L-02115 PDA WXS blood_normal CPT0109140002 CPT0109140002.WholeExome.RP-1303.bam 36842946570 BAM submitted_aligned CPTAC3 7da6e50d-5ae7-4e34-a6ff-23e88a87fb02 6e660d4ee6b399209b95ea77b663ce43 {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02115.WXS.N.hg38 C3L-02115 PDA WXS blood_normal CPT0109140002 ee07d9ad-7e3e-475e-828b-e949994a32ee_wxs_gdc_realn.bam 50901641303 BAM harmonized CPTAC3 d57672bf-cc23-41f7-92f7-187470512dd9 a4b5623a3bf1aacafb6fb4aac25e49b6 {"aliquot_tag": "ALQ_4af61a14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02115.WXS.T C3L-02115 PDA WXS tumor CPT0109110012_1 CPT0109110012_1.WholeExome.RP-1303.bam 48355182202 BAM submitted_aligned CPTAC3 8eb8b68a-7175-4027-a344-a3853a8caef6 ceefad04012c0af8d05b634b18679b91 {"aliquot_tag": "ALQ_146c7f45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.WXS.T C3L-02115 PDA WXS tumor CPT0109110012 CPT0109110012.WholeExome.RP-1303.bam 22649241520 BAM submitted_aligned CPTAC3 fba175ce-db11-4ed9-8e9a-9f1bf3a85889 fcc11621ad4b595496009601ea0745c3 {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.WXS.T.hg38 C3L-02115 PDA WXS tumor CPT0109110012 15188d57-8f0a-4864-a5a7-df81b6ecc496_wxs_gdc_realn.bam 30506090335 BAM harmonized CPTAC3 2b1cb0ec-609b-47fe-b871-31e39bc6f956 e11ad3c40f89c434d4c0ed60d83bc2b0 {"aliquot_tag": "ALQ_9b0da425", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02115.WXS.T.hg38 C3L-02115 PDA WXS tumor CPT0109110012_1 edb8d178-232e-4b8d-84a6-9edfca5a2d9d_wxs_gdc_realn.bam 66312709335 BAM harmonized CPTAC3 a354736d-1fbd-46b9-8b25-56c2f91d32f3 31a9963505ec67609325111bb66e3c5d {"aliquot_tag": "ALQ_146c7f45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.MethArray.Green.A C3L-02116 PDA Methylation_Array tissue_normal CPT0109230006 203561620087_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8c63ed6e-49a1-4e16-a086-c5f1cee491b6 fdd1033dbdbfb6dfd22afe744ca3b56c {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02116.MethArray.Green.T C3L-02116 PDA Methylation_Array tumor CPT0109200010 203028200101_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 722b5f66-7681-494d-af76-3ba8cf9200b6 3f75f93488788a588da548f37b075744 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.MethArray.Red.A C3L-02116 PDA Methylation_Array tissue_normal CPT0109230006 203561620087_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 07127304-36e8-4a99-8acb-9c93248df496 17ffe09919752eb0ff67252c2967f33e {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02116.MethArray.Red.T C3L-02116 PDA Methylation_Array tumor CPT0109200010 203028200101_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 9a44a46c-7353-4639-957f-1cd0a1cb6ec7 d751bb5b16942cad9a5d99bed534e4e8 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.miRNA-Seq.S35_L004_R1.T C3L-02116 PDA miRNA-Seq tumor CPT0109200007 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L004_R1_001.unaln.bam 262528202 BAM S35_L004_R1 submitted_unaligned CPTAC3 fe76ebe1-37c2-48f7-acc5-14005a284cec 097dd20b62cd83cc7d6d9620b56fb3cf {"aliquot_tag": "ALQ_49883af5", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.miRNA-Seq.T.hg38 C3L-02116 PDA miRNA-Seq tumor CPT0109200007 5fffd144-574e-454e-abe3-b73e2514c048_mirnaseq_gdc_realn.bam 289437655 BAM harmonized CPTAC3 fd170de7-b55a-4655-a6dc-3917a689be41 c288ad3b5f66e5b071aca4c8cba61780 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.RNA-Seq.chimeric.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.chimeric.gdc_realn.bam 82575725 BAM chimeric harmonized CPTAC3 100cb736-0d25-4eb9-9e9a-149a6f93506d 4b5bf1c942ee7dc30a3597df190a0985 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.RNA-Seq.genomic.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.genomic.gdc_realn.bam 10053463791 BAM genomic harmonized CPTAC3 32a85492-7c1b-4ee8-b15b-5ee057c2b61e 010d10bae578eba36319447f3a67ee05 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.RNA-Seq.S21_L006_R1.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R1_001.fastq.gz 4382020124 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 1640e2fc-33d7-48a9-921b-17f243d88846 c523c8435df9de0b9ba2b115f403bc39 {"aliquot_tag": "ALQ_49883af5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.RNA-Seq.S21_L006_R2.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R2_001.fastq.gz 4996451746 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 163f8210-0192-4ab8-90d7-26998a55b7f1 682c53cfde6187933ae30c61d4692562 {"aliquot_tag": "ALQ_49883af5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.RNA-Seq.transcriptome.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.transcriptome.gdc_realn.bam 11435911118 BAM transcriptome harmonized CPTAC3 9fbac401-480c-4466-9a28-7fbba95cee62 85835dc8ba0aab73c87ad093d5990e65 {"aliquot_tag": "ALQ_49883af5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.WGS.A C3L-02116 PDA WGS tissue_normal CPT0109230006 CPT0109230006.WholeGenome.RP-1303.bam 59609816462 BAM submitted_aligned CPTAC3 16834d19-39a1-47cd-a09e-f5599bb8584a e290fc0aba24dde5240df4a2af8fc408 {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02116.WGS.A.hg38 C3L-02116 PDA WGS tissue_normal CPT0109230006 03fa49d8-dd1c-4f64-b093-9a49407a4985_wgs_gdc_realn.bam 88041679732 BAM harmonized CPTAC3 743d77d9-287c-4bb1-b2bf-0cfd6d85da4b 4992a827712240c07d1b4e3c97d9b382 {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02116.WGS.N C3L-02116 PDA WGS blood_normal CPT0109240002 CPT0109240002.WholeGenome.RP-1303.bam 57907195983 BAM submitted_aligned CPTAC3 2a39cb28-1564-4e9e-b27c-6a39468829d0 bea304f5c0c55f797381b244c1a43886 {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02116.WGS.N.hg38 C3L-02116 PDA WGS blood_normal CPT0109240002 9ab8dcd1-3f06-4847-b8f2-37ecd4b2d4a7_wgs_gdc_realn.bam 84845033742 BAM harmonized CPTAC3 e6c29fee-0963-4eea-8cd9-5442284864c6 ae919fe22246733950d117e3650221f6 {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02116.WGS.T C3L-02116 PDA WGS tumor CPT0109200010 CPT0109200010.WholeGenome.RP-1303.bam 65134074764 BAM submitted_aligned CPTAC3 1ad66aaf-18b1-4e7f-b45b-a62cc3ce718e 2b01517561d4c96cd8830a66e20ba523 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.WGS.T.hg38 C3L-02116 PDA WGS tumor CPT0109200010 95ce0b5d-523c-45e5-9a1c-c006a30ca478_wgs_gdc_realn.bam 95049331673 BAM harmonized CPTAC3 47b1c8d5-0706-4be6-a029-db71b4a94777 a4e3f6b0a548d71ad722d6d17cbd62ad {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.WXS.A C3L-02116 PDA WXS tissue_normal CPT0109230006 CPT0109230006.WholeExome.RP-1303.bam 47848881896 BAM submitted_aligned CPTAC3 52e00a5d-2746-4fe2-bc93-6580165e9d0c 11f7f4f1ba9d902608e149a0e535437b {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02116.WXS.A.hg38 C3L-02116 PDA WXS tissue_normal CPT0109230006 03fa49d8-dd1c-4f64-b093-9a49407a4985_wxs_gdc_realn.bam 65773814436 BAM harmonized CPTAC3 32bdc885-4abb-425b-a6e8-c8955bd06692 2944638e824ed78c3475e3fa3c57aab1 {"aliquot_tag": "ALQ_792f70b3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02116.WXS.N C3L-02116 PDA WXS blood_normal CPT0109240002 CPT0109240002.WholeExome.RP-1303.bam 48054164596 BAM submitted_aligned CPTAC3 0020b81f-7c94-41dc-9e04-e37f2dbe5a15 38b0231ecbe1f82a79a53e60ac8474fc {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02116.WXS.N.hg38 C3L-02116 PDA WXS blood_normal CPT0109240002 9ab8dcd1-3f06-4847-b8f2-37ecd4b2d4a7_wxs_gdc_realn.bam 64053592597 BAM harmonized CPTAC3 12fa2c87-8461-4cc3-92a9-18ece6cf978e 0ea8b45b2d1bc74cf98a685de7f956c3 {"aliquot_tag": "ALQ_cc6268ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02116.WXS.T C3L-02116 PDA WXS tumor CPT0109200010_1 CPT0109200010_1.WholeExome.RP-1303.bam 58225672727 BAM submitted_aligned CPTAC3 e01bd257-f403-4696-8f26-2881ff140683 c1a98038b7db2929870991b8fccae913 {"aliquot_tag": "ALQ_3f10a77c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.WXS.T C3L-02116 PDA WXS tumor CPT0109200010 CPT0109200010.WholeExome.RP-1303.bam 26506340513 BAM submitted_aligned CPTAC3 be31c0e2-1b5c-46bc-bd8b-de1f02518516 a1a2ad45742bddd541177dcfaee127d2 {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.WXS.T.hg38 C3L-02116 PDA WXS tumor CPT0109200010_1 8c4729b0-7ceb-4ed0-8358-9b41b4a2d294_wxs_gdc_realn.bam 78928515249 BAM harmonized CPTAC3 4bb41eb0-ac39-4d0e-ad67-7fbfec2b3f7d 61fb38082ea6bd56951f18d463ae7120 {"aliquot_tag": "ALQ_3f10a77c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02116.WXS.T.hg38 C3L-02116 PDA WXS tumor CPT0109200010 95ce0b5d-523c-45e5-9a1c-c006a30ca478_wxs_gdc_realn.bam 35525830723 BAM harmonized CPTAC3 78fece78-c1c2-49a8-8024-008019ae68a0 959804cd9e0b26d2e46338411b17cb5e {"aliquot_tag": "ALQ_cef79e17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.MethArray.Green.T C3L-02118 PDA Methylation_Array tumor CPT0109300010 203028200048_R02C01_Grn.idat 13676232 IDAT Green NA CPTAC3 69ba3ede-139e-4cee-83d8-44786be7ad93 5b6e0a67895c93177b20acdf73460a68 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.MethArray.Red.T C3L-02118 PDA Methylation_Array tumor CPT0109300010 203028200048_R02C01_Red.idat 13676232 IDAT Red NA CPTAC3 b6b2a99e-6936-4b38-9e29-57072598e880 5462147a90f0090e7e7dd93914b1e101 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.miRNA-Seq.S36_L004_R1.T C3L-02118 PDA miRNA-Seq tumor CPT0109300007 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L004_R1_001.unaln.bam 297335988 BAM S36_L004_R1 submitted_unaligned CPTAC3 68eb480b-6427-48c7-844a-3bf76e003342 da72a0c3f86d33e7d4755c50df81531e {"aliquot_tag": "ALQ_82d4e950", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.miRNA-Seq.T.hg38 C3L-02118 PDA miRNA-Seq tumor CPT0109300007 50b67588-62f4-42e0-a9b4-fcd672ad7466_mirnaseq_gdc_realn.bam 329588832 BAM harmonized CPTAC3 d4aeb1e3-a3b3-4098-9fe2-e2dbe311aa5c 8ce58c37c7a580b05e59cc0a56967ed0 {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.RNA-Seq.chimeric.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.chimeric.gdc_realn.bam 48433028 BAM chimeric harmonized CPTAC3 628f3358-0d1b-4e84-b0de-d74d3403f87f d7877376b966c9f0406882b93f33c8bb {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.RNA-Seq.genomic.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.genomic.gdc_realn.bam 8343084789 BAM genomic harmonized CPTAC3 07d8def6-ca76-4062-93eb-1b751939fa06 2579fe89f93c5d69aa5b31148f82437e {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.RNA-Seq.S19_L005_R1.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 3950659348 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 e4e8ef9b-f4c0-417a-9c0f-838050aa29e2 263b3a753011eb458451edd1969f2113 {"aliquot_tag": "ALQ_82d4e950", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.RNA-Seq.S19_L005_R2.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4291714218 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 ea082c2d-babd-4dbb-8a36-4d8aa6ed65e7 da4fe6c7c2ee00e7df2bb3def5d54181 {"aliquot_tag": "ALQ_82d4e950", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.RNA-Seq.transcriptome.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.transcriptome.gdc_realn.bam 11031472476 BAM transcriptome harmonized CPTAC3 822243a2-b1a8-4b86-8615-184c1ab4b8a1 8d630497ead408659a8f367e8ba1451b {"aliquot_tag": "ALQ_82d4e950", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.WGS.N C3L-02118 PDA WGS blood_normal CPT0109340002 CPT0109340002.WholeGenome.RP-1303.bam 59071471393 BAM submitted_aligned CPTAC3 a5d367f5-42c1-4c56-b014-c4dbedc9cd61 576033be3aee71152093663858acb513 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02118.WGS.N.hg38 C3L-02118 PDA WGS blood_normal CPT0109340002 ee262e1d-0560-4720-9270-41ed676d887b_wgs_gdc_realn.bam 87128184483 BAM harmonized CPTAC3 0851b674-0d5c-4984-84fb-3fbb214abcf6 64e45abd7b2290195a7c7557869c9698 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02118.WGS.T C3L-02118 PDA WGS tumor CPT0109300010 CPT0109300010.WholeGenome.RP-1303.bam 60436678158 BAM submitted_aligned CPTAC3 84cb2c32-f172-4dfd-ab15-3c23f196a749 5e98d91b71ada81de68a88a6b5ed8585 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.WGS.T.hg38 C3L-02118 PDA WGS tumor CPT0109300010 bdad17b5-f936-4294-82f1-a0d922da7fcc_wgs_gdc_realn.bam 90414159313 BAM harmonized CPTAC3 5046bb4c-818c-4cbb-992b-8958d1905954 68b91a315f23b44eb83dfcb8bb03ca31 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.WXS.N C3L-02118 PDA WXS blood_normal CPT0109340002 CPT0109340002.WholeExome.RP-1303.bam 27852548440 BAM submitted_aligned CPTAC3 5f43736d-d36e-411d-994d-9f9b34b32470 b1b5258209d9e533ce573136cdd36b20 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02118.WXS.N.hg38 C3L-02118 PDA WXS blood_normal CPT0109340002 ee262e1d-0560-4720-9270-41ed676d887b_wxs_gdc_realn.bam 37443559906 BAM harmonized CPTAC3 ca828a78-e361-42c7-ab37-b394a4ff7d34 b06d234aee85f2a93225e9a6b3bec567 {"aliquot_tag": "ALQ_73ebb1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02118.WXS.T C3L-02118 PDA WXS tumor CPT0109300010_1 CPT0109300010_1.WholeExome.RP-1303.bam 37277055816 BAM submitted_aligned CPTAC3 fc8b3a09-7c00-423b-a51b-92864f739586 359d6ab726cd2dbce28a8f674abc169c {"aliquot_tag": "ALQ_f3baa7e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.WXS.T C3L-02118 PDA WXS tumor CPT0109300010 CPT0109300010.WholeExome.RP-1303.bam 20959585729 BAM submitted_aligned CPTAC3 93310813-8e7b-4e29-b2ef-c2fb69948d7f d1a64d9fc26df6282256f35d25634268 {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.WXS.T.hg38 C3L-02118 PDA WXS tumor CPT0109300010_1 c074f11c-7f29-462e-a800-82ffc1cb8ca2_wxs_gdc_realn.bam 51642895017 BAM harmonized CPTAC3 248d6a11-0789-45dc-8ac6-f352b41f4883 2d764c1bcbd63bbbb58bdcd90ecec5f9 {"aliquot_tag": "ALQ_f3baa7e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02118.WXS.T.hg38 C3L-02118 PDA WXS tumor CPT0109300010 bdad17b5-f936-4294-82f1-a0d922da7fcc_wxs_gdc_realn.bam 28993875884 BAM harmonized CPTAC3 9a7e13c4-8cdf-4867-8dbe-ab939c4ef8dc 197ae03f36b5cabb6a78714482f95b5b {"aliquot_tag": "ALQ_5ab4db2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02119.MethArray.Green.T C3L-02119 UCEC Methylation_Array tumor CPT0114340009 203281980233_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 cdeea995-aad5-4591-bc96-a8f04168e77d 8eefa5ba6d87e3c75603853786e37763 {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.MethArray.Red.T C3L-02119 UCEC Methylation_Array tumor CPT0114340009 203281980233_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 417ee91e-518b-4a81-846e-218a5a731ab6 6dd4990a31ce09c49a474f8c128fe3ce {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.miRNA-Seq.S24_L002_R1.T C3L-02119 UCEC miRNA-Seq tumor CPT0114340006 190108_UNC31-K00269_0176_AHYGLVBBXX_GGTAGC_S24_L002_R1_001.unaln.bam 303658243 BAM S24_L002_R1 submitted_unaligned CPTAC3 4a9f0068-655c-4132-bf94-b492eaa66d96 d37c059867da517d4c9b99360953a369 {"aliquot_tag": "ALQ_ad2e1e58", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.miRNA-Seq.T.hg38 C3L-02119 UCEC miRNA-Seq tumor CPT0114340006 883fcdb5-a7b1-4d87-9cf9-6a6a70f913c0_mirnaseq_gdc_realn.bam 324630427 BAM harmonized CPTAC3 8c70855c-ab1c-41ce-a7d5-fd3e5e8d8248 afb28eb1dcdc01e3d3af0281083d158e {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.chimeric.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.chimeric.gdc_realn.bam 32481170 BAM chimeric harmonized CPTAC3 0a2f23b1-21ef-477f-8dfe-38683848bdb0 388499b7fc9ba248c397f9ec663d0cf1 {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.chimeric.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.chimeric.gdc_realn.bam 142348899 BAM chimeric harmonized CPTAC3 3e56bfa8-ddc4-4e92-bd0f-e3c4b686bf78 5c6340439d79c69fd03ec7a430b21ec1 {"aliquot_tag": "ALQ_132f92f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.genomic.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.genomic.gdc_realn.bam 10805924998 BAM genomic harmonized CPTAC3 8bd2e211-4269-4a71-8d77-d6e5fed8796b 14d6f610961be95980d251cfbf9f94d1 {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.genomic.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.genomic.gdc_realn.bam 8430924443 BAM genomic harmonized CPTAC3 a9482e2d-d147-4cc3-9f2e-6db867eb3385 7991c4bac11d92fd3a4a94691b9fb254 {"aliquot_tag": "ALQ_132f92f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.S20_L005_R1.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 4545023323 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 256c5657-c1a4-4d03-bc9e-74efb01b5dd0 c73d1247929f7d1a290420ededbfc0dc {"aliquot_tag": "ALQ_ad2e1e58", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.S20_L005_R2.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4917687906 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 60f04f66-07de-40a8-9215-0b8937336e38 71e9abce8a7a073347c293afa7e67a47 {"aliquot_tag": "ALQ_ad2e1e58", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.S86_R1.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R1_001.fastq.gz 5017337379 FASTQ S86_R1 submitted_unaligned CPTAC3 d5501f0a-89f0-429e-89f8-2ccbf21fed06 ec38de04c390a9f697c4cc76623e5f72 {"aliquot_tag": "ALQ_132f92f3", "sample": "S86", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.S86_R2.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R2_001.fastq.gz 5174843340 FASTQ S86_R2 submitted_unaligned CPTAC3 e4c3ed17-b6a9-4027-bdee-ba9826c6582d bc9d4a5d29ddace54c2f567f7add5066 {"aliquot_tag": "ALQ_132f92f3", "sample": "S86", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.transcriptome.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.transcriptome.gdc_realn.bam 11767625488 BAM transcriptome harmonized CPTAC3 a9e79415-63cb-47b7-8c11-c26d97e627a2 b2b1c1d266f607273680a919cfd20a63 {"aliquot_tag": "ALQ_ad2e1e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.RNA-Seq.transcriptome.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.transcriptome.gdc_realn.bam 6447553665 BAM transcriptome harmonized CPTAC3 64726da3-9ffe-4981-a08d-76f851eaa93f c29d9bfcba84629d8ef59de84ba21411 {"aliquot_tag": "ALQ_132f92f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.WGS.N C3L-02119 UCEC WGS blood_normal CPT0116070002 CPT0116070002.WholeGenome.RP-1303.bam 55338054810 BAM submitted_aligned CPTAC3 99d1c0ff-a64d-4b13-8134-8fa535ca6963 d8f4d91cef357bc191167881418093da {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02119.WGS.N.hg38 C3L-02119 UCEC WGS blood_normal CPT0116070002 8858dc7e-092e-4403-85cd-3caf6919cb3f_wgs_gdc_realn.bam 79047960040 BAM harmonized CPTAC3 4c124cde-0a02-4f6c-bab2-0094dd44a24a 85b525d7c5dc6094b0b0a36047dd948d {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02119.WGS.T C3L-02119 UCEC WGS tumor CPT0114340009 CPT0114340009.WholeGenome.RP-1303.bam 56933733093 BAM submitted_aligned CPTAC3 f4d9e5f6-42f6-4493-b334-c0c8c72d6d72 fec2e3e0b44f3fb51e7a5d79c1e3a1c8 {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.WGS.T.hg38 C3L-02119 UCEC WGS tumor CPT0114340009 7ddb8194-33fe-4321-8c12-7388f7a9cf23_wgs_gdc_realn.bam 84448628487 BAM harmonized CPTAC3 2930bc20-95cd-4ecc-b917-ce2819d812d4 dfededd1f452784d81cba5be6b67101c {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.WXS.N C3L-02119 UCEC WXS blood_normal CPT0116070002 CPT0116070002.WholeExome.RP-1303.bam 23726468802 BAM submitted_aligned CPTAC3 561f25e9-4c3b-4ab4-a273-eccde8ed0ffa 371bad299f23315a69666276569f690f {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02119.WXS.N.hg38 C3L-02119 UCEC WXS blood_normal CPT0116070002 8858dc7e-092e-4403-85cd-3caf6919cb3f_wxs_gdc_realn.bam 32551996573 BAM harmonized CPTAC3 2520e95b-6d19-4a37-bce3-6c71043ab9d8 85c18ab087ecd11a7feb151f36b40d44 {"aliquot_tag": "ALQ_fce8c316", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02119.WXS.T C3L-02119 UCEC WXS tumor CPT0114340009 CPT0114340009.WholeExome.RP-1303.bam 27351585875 BAM submitted_aligned CPTAC3 d9110074-0397-4fd4-9332-e5d4a0354754 f37634e050e21fbf0ffeafd2a5369378 {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02119.WXS.T.hg38 C3L-02119 UCEC WXS tumor CPT0114340009 7ddb8194-33fe-4321-8c12-7388f7a9cf23_wxs_gdc_realn.bam 38116818168 BAM harmonized CPTAC3 e7a20128-409f-4612-8cf4-c5186c84fa71 eea9ef2a9a3a3ea51907892bee76c55c {"aliquot_tag": "ALQ_3d9103c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.MethArray.Green.T C3L-02121 UCEC Methylation_Array tumor CPT0114100009 203220070151_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7d1ca296-b80c-4f2b-8e3f-722934ac6f81 000af280ff115a742693e304c091e0e7 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.MethArray.Red.T C3L-02121 UCEC Methylation_Array tumor CPT0114100009 203220070151_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 dfe3d3c6-1057-4e96-9a72-207039a07eb0 29a8dd64b1d71edeb1954de7702653dd {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.miRNA-Seq.A.hg38 C3L-02121 UCEC miRNA-Seq tissue_normal CPT0114180009 94495c31-1e3d-4656-8ee6-34e3334c9c3c_mirnaseq_gdc_realn.bam 227078076 BAM harmonized CPTAC3 a0f92b84-d15e-4e47-a0b2-2dca706145b2 1aa8738269defbb25741e9b338271955 {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.miRNA-Seq.S10_L004_R1.A C3L-02121 UCEC miRNA-Seq tissue_normal CPT0114180009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L004_R1_001.unaln.bam 197300627 BAM S10_L004_R1 submitted_unaligned CPTAC3 55d6eb31-32b5-44f5-bbe4-5997678571ab fe11aee6aa4256fdf16f2a700c804ae8 {"aliquot_tag": "ALQ_b5a94fc3", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.miRNA-Seq.S23_L002_R1.T C3L-02121 UCEC miRNA-Seq tumor CPT0114100006 190108_UNC31-K00269_0176_AHYGLVBBXX_GAGTGG_S23_L002_R1_001.unaln.bam 178952739 BAM S23_L002_R1 submitted_unaligned CPTAC3 f634478d-79c5-4130-acfb-8a302283441b 0c791ab7ea5ec9d5f446685856708fb6 {"aliquot_tag": "ALQ_15661993", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.miRNA-Seq.T.hg38 C3L-02121 UCEC miRNA-Seq tumor CPT0114100006 8c916da0-b0b2-411f-8af1-54528a63df57_mirnaseq_gdc_realn.bam 192618105 BAM harmonized CPTAC3 21ee99dc-29e2-4e59-a7aa-2ab441c9277b f9d45fed1ec76a89b1fccf045873e885 {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.chimeric.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.chimeric.gdc_realn.bam 46578017 BAM chimeric harmonized CPTAC3 fa3e554c-e843-431f-89d1-9bba674ed6e9 0b6906a66bf493c491641dc98690ce36 {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.RNA-Seq.chimeric.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.chimeric.gdc_realn.bam 29152732 BAM chimeric harmonized CPTAC3 4b5e42ca-fec3-48f1-8963-79c267b0718d 7cc75f90ae67a8240a58c3f07ba58c86 {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.chimeric.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.chimeric.gdc_realn.bam 131883766 BAM chimeric harmonized CPTAC3 db1173d7-38dd-4db7-8f81-454a0e27e26d d36b65d7e1b4df182206fb25e0fd402e {"aliquot_tag": "ALQ_b662a580", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.genomic.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.genomic.gdc_realn.bam 7784515531 BAM genomic harmonized CPTAC3 c3902643-b7bc-4409-9984-091c9558fccd 1586bc3c4542a6220129c53b6c1d5cab {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.RNA-Seq.genomic.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.genomic.gdc_realn.bam 9689659409 BAM genomic harmonized CPTAC3 e409ad0e-5b72-4944-b641-c0c6eba89139 339539aa4782f341a60b10380d4abe0d {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.genomic.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.genomic.gdc_realn.bam 6504198618 BAM genomic harmonized CPTAC3 1e1622cc-8426-4d8e-9a8a-c1ce6276ff5a dc2b427bc595cf05e0569c6366df3370 {"aliquot_tag": "ALQ_b662a580", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.S17_L005_R1.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4396825485 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 d68f2587-ca3d-41ee-a28c-2b610806cea3 f55a8cda5db37c047981477174d969aa {"aliquot_tag": "ALQ_15661993", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.S17_L005_R2.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 4689841555 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 0ab21403-3cac-4604-b86d-2b019f06a40c de14ccaf184ea56adb6754e962645f59 {"aliquot_tag": "ALQ_15661993", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.S3_L001_R1.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3575278323 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 cb0e2dc0-8870-47c4-9aeb-b8bbed4415bf 16542ddc0f57ad063219719083ccca70 {"aliquot_tag": "ALQ_b5a94fc3", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.RNA-Seq.S3_L001_R2.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3847646986 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 81259fe6-e7b3-450f-9ee5-fd32787426dd ac73954dedf12f00b2aa4de2b8700c47 {"aliquot_tag": "ALQ_b5a94fc3", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.RNA-Seq.S45_R1.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R1_001.fastq.gz 4233986735 FASTQ S45_R1 submitted_unaligned CPTAC3 87fd6962-8658-47a8-929b-e49996ac2b9a 19a1c8ff68109662578b3120962d88e9 {"aliquot_tag": "ALQ_b662a580", "sample": "S45", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.S45_R2.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R2_001.fastq.gz 4420810011 FASTQ S45_R2 submitted_unaligned CPTAC3 9743d6b6-48f6-45cb-b6e1-a371a74c3b95 7b27b8b1d4208399cb2b5cadbdcdb0ff {"aliquot_tag": "ALQ_b662a580", "sample": "S45", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.transcriptome.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.transcriptome.gdc_realn.bam 10891459186 BAM transcriptome harmonized CPTAC3 bd98b851-da00-42d3-8066-90134c8fa293 a35923329252f59b6505dc564d6d5aa9 {"aliquot_tag": "ALQ_b5a94fc3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.RNA-Seq.transcriptome.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.transcriptome.gdc_realn.bam 12627985794 BAM transcriptome harmonized CPTAC3 1da0748d-feb1-4a24-85c3-33ec4e18ec45 67fb4556596dfbe1c08ff8170f833f2d {"aliquot_tag": "ALQ_15661993", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.RNA-Seq.transcriptome.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.transcriptome.gdc_realn.bam 4866177581 BAM transcriptome harmonized CPTAC3 169c3ac4-42ab-4916-83ea-6ff1dc2dac31 e779630312fcede9217580ff90e2fd7e {"aliquot_tag": "ALQ_b662a580", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.WGS.A C3L-02121 UCEC WGS tissue_normal CPT0114180006 CPT0114180006.WholeGenome.RP-1303.bam 60069332148 BAM submitted_aligned CPTAC3 d81df8f4-b649-44ff-a403-8f42241d6b84 06403672f2f43e22f11825a7de394c37 {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.WGS.A.hg38 C3L-02121 UCEC WGS tissue_normal CPT0114180006 a1d530af-8ad8-4c00-b483-1d3f8b71465e_wgs_gdc_realn.bam 88868521307 BAM harmonized CPTAC3 e9ff7aae-1009-4158-869d-06615ccac09c c1c7308970b8fbcf381045ae80e9a47f {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.WGS.N C3L-02121 UCEC WGS blood_normal CPT0116060002 CPT0116060002.WholeGenome.RP-1303.bam 59258106616 BAM submitted_aligned CPTAC3 51b62346-cdba-45e2-af64-ae3eb31bc8c1 126bd7247e481b594c99957261e1f173 {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02121.WGS.N.hg38 C3L-02121 UCEC WGS blood_normal CPT0116060002 35ab08b8-2bd6-4d4c-9c49-5dba075be8a7_wgs_gdc_realn.bam 86900531069 BAM harmonized CPTAC3 5e779a0b-cff6-473e-b153-900b1ca70e7e 730d25cb8de068bbad83504ff8a6e050 {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02121.WGS.T C3L-02121 UCEC WGS tumor CPT0114100009 CPT0114100009.WholeGenome.RP-1303.bam 51826373313 BAM submitted_aligned CPTAC3 0322c5dc-cc74-4707-b8cb-4d1a5d34fc64 e6842968ec9006a7c60a0e768239bde0 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.WGS.T.hg38 C3L-02121 UCEC WGS tumor CPT0114100009 97676e1b-baf7-4ce8-a31c-85f48297f123_wgs_gdc_realn.bam 76382345939 BAM harmonized CPTAC3 92637f7f-aec4-421b-a39d-b6cf62f11aee 03c01efdba30b779ab1a1810b7fa3b84 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.WXS.A C3L-02121 UCEC WXS tissue_normal CPT0114180006 CPT0114180006.WholeExome.RP-1303.bam 22577521495 BAM submitted_aligned CPTAC3 93fd08af-b452-4ca4-b7a9-3dff28b6a278 4aee05941c30ec3d672cbd99529737af {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.WXS.A.hg38 C3L-02121 UCEC WXS tissue_normal CPT0114180006 a1d530af-8ad8-4c00-b483-1d3f8b71465e_wxs_gdc_realn.bam 30609295813 BAM harmonized CPTAC3 7ffd63e3-ef20-4e1a-b0b2-2611bd23cd42 734956bac0d895f306ab7e90e75e66b2 {"aliquot_tag": "ALQ_25165252", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02121.WXS.N C3L-02121 UCEC WXS blood_normal CPT0116060002 CPT0116060002.WholeExome.RP-1303.bam 24615364045 BAM submitted_aligned CPTAC3 0e1f6439-ddad-4b43-8c65-38c0eed99f87 2ca9e14789e3ec7850141c77086885ab {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02121.WXS.N.hg38 C3L-02121 UCEC WXS blood_normal CPT0116060002 35ab08b8-2bd6-4d4c-9c49-5dba075be8a7_wxs_gdc_realn.bam 32856448171 BAM harmonized CPTAC3 c0d73bdd-c501-4b1b-bfdd-ba2774557350 62e7e78ba98032ec04806838ea849245 {"aliquot_tag": "ALQ_c188eaa6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02121.WXS.T C3L-02121 UCEC WXS tumor CPT0114100009 CPT0114100009.WholeExome.RP-1303.bam 40599308494 BAM submitted_aligned CPTAC3 6fdcefaa-f5b3-44e7-b434-31dfd2061f71 be0e59c75350bb85e809f47690481838 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02121.WXS.T.hg38 C3L-02121 UCEC WXS tumor CPT0114100009 97676e1b-baf7-4ce8-a31c-85f48297f123_wxs_gdc_realn.bam 57017045966 BAM harmonized CPTAC3 609caaa7-9840-4008-bb43-c1262e27bd2c 34b86f61c8a9114c202b12440f00beb9 {"aliquot_tag": "ALQ_85d90402", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.MethArray.Green.T C3L-02125 UCEC Methylation_Array tumor CPT0197250006 203561450114_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2373039c-4783-419a-84cc-4440fdae66a6 4e569c00cf70b73fd247f8b97944c6cc {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.MethArray.Red.T C3L-02125 UCEC Methylation_Array tumor CPT0197250006 203561450114_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 08e6589a-7142-488a-84c0-dfcc279c73aa 45956f84059adf55a94bad35fe332279 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.miRNA-Seq.S31_L004_R1.T C3L-02125 UCEC miRNA-Seq tumor CPT0197250009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACGAT_S31_L004_R1_001.unaln.bam 215015791 BAM S31_L004_R1 submitted_unaligned CPTAC3 5e49d0fb-d7b6-49f3-8d4d-5e53226c15c1 c97e2e34038427b1f4666591f3718732 {"aliquot_tag": "ALQ_29a0f8f4", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.miRNA-Seq.T.hg38 C3L-02125 UCEC miRNA-Seq tumor CPT0197250009 e05b7e01-2f91-4830-a8ee-4ad22cc0baae_mirnaseq_gdc_realn.bam 238701998 BAM harmonized CPTAC3 803fab09-269e-4b67-820d-577064bfcbef 57afcaa01fb4e88f46b6cc904cd7b50c {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.chimeric.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.chimeric.gdc_realn.bam 47822194 BAM chimeric harmonized CPTAC3 693b785a-206c-40d6-a436-418d8c5f1099 e2ec5110169b869592d038b8f4592b3f {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.chimeric.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.chimeric.gdc_realn.bam 296740344 BAM chimeric harmonized CPTAC3 b6a84151-5490-400d-8b67-9206135d947a 992ab392aa4c2975b62631b90e1bc955 {"aliquot_tag": "ALQ_24c72c13", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.genomic.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.genomic.gdc_realn.bam 10416676275 BAM genomic harmonized CPTAC3 368ea975-5e25-4d7e-8b52-643c90f3e699 46d1b3422663e12e08798dba0e9e8c65 {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.genomic.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.genomic.gdc_realn.bam 13784536045 BAM genomic harmonized CPTAC3 cbe0aba0-dfda-4800-8983-6f16badadd2f 7a453741c0314134f53d7e493b5fac35 {"aliquot_tag": "ALQ_24c72c13", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.S10_L003_R1.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R1_001.fastq.gz 4880274619 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 efaf4cdf-25d0-4b27-b293-fef28bf1053a b0f5672a8ce70bdd8b714eac32df2cae {"aliquot_tag": "ALQ_29a0f8f4", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.S10_L003_R2.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R2_001.fastq.gz 5667449252 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 537d3e81-c180-4152-8499-eb54a0832699 9f6dc1614cf4fd143f7d8105cac40b02 {"aliquot_tag": "ALQ_29a0f8f4", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.S31_R1.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R1_001.fastq.gz 8281172775 FASTQ S31_R1 submitted_unaligned CPTAC3 d49f0352-6fa8-461c-a6c2-d2544e78436a 9c0a0652482272c6ffa6c7d456873485 {"aliquot_tag": "ALQ_24c72c13", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.S31_R2.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R2_001.fastq.gz 8391356759 FASTQ S31_R2 submitted_unaligned CPTAC3 5deb2b3a-1f29-4347-8ed1-932e2b675506 86c97c647b8d2ed1caf83918ecc8eeee {"aliquot_tag": "ALQ_24c72c13", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.transcriptome.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.transcriptome.gdc_realn.bam 13280505478 BAM transcriptome harmonized CPTAC3 22032269-1d84-4c77-b7ae-bfe6aca31278 92bb0ad37790f68aa85863e98dfa614e {"aliquot_tag": "ALQ_29a0f8f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.RNA-Seq.transcriptome.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.transcriptome.gdc_realn.bam 7668844757 BAM transcriptome harmonized CPTAC3 1a0a349c-9f63-4c86-aca4-2ed56646aa89 7ec6f8711d0b9fd1a45e4f5fb7e73fbb {"aliquot_tag": "ALQ_24c72c13", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.WGS.N C3L-02125 UCEC WGS blood_normal CPT0199940002 CPT0199940002.WholeGenome.RP-1303.bam 80092949119 BAM submitted_aligned CPTAC3 d54d5504-a551-479e-9aa3-d6149b167f89 b7d5a8e53379e5acb1e52c4f460c0c16 {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02125.WGS.N.hg38 C3L-02125 UCEC WGS blood_normal CPT0199940002 4b853998-7ba1-4649-9783-e09a313508c2_wgs_gdc_realn.bam 117834340024 BAM harmonized CPTAC3 9e47245d-af78-4698-a4f6-296f06c099a5 36089f4c3d05b677c0f903aaa42741f3 {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02125.WGS.T C3L-02125 UCEC WGS tumor CPT0197250006 CPT0197250006.WholeGenome.RP-1303.bam 60455257706 BAM submitted_aligned CPTAC3 b1bd6f6e-c0b5-4219-9871-b988dd54f85e 1d3df0d6556ce512671b1197da2e6e13 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.WGS.T.hg38 C3L-02125 UCEC WGS tumor CPT0197250006 78aac7c2-2610-4aab-9451-3949fd11a120_wgs_gdc_realn.bam 86696677535 BAM harmonized CPTAC3 12e8ad0c-70f9-4626-96bb-124451c75302 213f36bdaf01a0fb71c0334274afb97b {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.WXS.N C3L-02125 UCEC WXS blood_normal CPT0199940002 CPT0199940002.WholeExome.RP-1303.bam 26966093780 BAM submitted_aligned CPTAC3 4f4b2786-a32f-4e07-a935-6b9ceb9a0c73 e51bca08905ec008165b87ee65465d4c {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02125.WXS.N.hg38 C3L-02125 UCEC WXS blood_normal CPT0199940002 4b853998-7ba1-4649-9783-e09a313508c2_wxs_gdc_realn.bam 36506921854 BAM harmonized CPTAC3 6fff8d96-caf5-4bc7-a4d7-fc090baf8bcc 3d4da4476f15af7962bfc7db6aa84e2f {"aliquot_tag": "ALQ_b9ea8352", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02125.WXS.T C3L-02125 UCEC WXS tumor CPT0197250006 CPT0197250006.WholeExome.RP-1303.bam 23833666598 BAM submitted_aligned CPTAC3 2161e56a-4993-4a79-8018-9654a653ebcb 645848e780f77ea66d24afe2496c4148 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02125.WXS.T.hg38 C3L-02125 UCEC WXS tumor CPT0197250006 78aac7c2-2610-4aab-9451-3949fd11a120_wxs_gdc_realn.bam 32929063394 BAM harmonized CPTAC3 789bdc1b-c5f2-45a1-a8d6-ae3798faf717 c16e3b202012f74700fad1bea830fe13 {"aliquot_tag": "ALQ_b91fe565", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02127.MethArray.Green.A C3L-02127 LSCC Methylation_Array tissue_normal CPT0130310006 203219650098_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f118df5f-8943-477b-8041-550c0eef65ce bb5673d1cdc4bf56167396a032a98551 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.MethArray.Green.T C3L-02127 LSCC Methylation_Array tumor CPT0130270009 203219650003_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a51f8246-5771-4c72-9181-80a545b740bf f663f5abfb38319ac8beea9b4e3fc712 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.MethArray.Red.A C3L-02127 LSCC Methylation_Array tissue_normal CPT0130310006 203219650098_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 f4b8c798-5828-4feb-863d-955c2d35c0ea 08af5beda97e62481678dafe4062d062 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.MethArray.Red.T C3L-02127 LSCC Methylation_Array tumor CPT0130270009 203219650003_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 b8f6bb7a-2e68-45b1-8dc6-875af1f5c085 3dc6bbf68f1bf31dc90c8928a53c2b46 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.miRNA-Seq.A.hg38 C3L-02127 LSCC miRNA-Seq tissue_normal CPT0130310009 672fd801-e521-4197-891a-b37af728d01c_mirnaseq_gdc_realn.bam 262596817 BAM harmonized CPTAC3 62df9d51-9776-410c-bfe0-19d041ef0a1c fd9e96d167045bb1f44b026ed94dcc10 {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.miRNA-Seq.S17_L001_R1.T C3L-02127 LSCC miRNA-Seq tumor CPT0130270006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTAGAG_S17_L001_R1_001.unaln.bam 202632741 BAM S17_L001_R1 submitted_unaligned CPTAC3 c02682f7-bea9-4544-ae4e-f1c46dace82a 034101fd97eaaaa7c79c4ee7ca982bb1 {"aliquot_tag": "ALQ_97b89443", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.miRNA-Seq.S29_L002_R1.A C3L-02127 LSCC miRNA-Seq tissue_normal CPT0130310009 181219_UNC31-K00269_0173_BHYGJJBBXX_CACCGG_S29_L002_R1_001.unaln.bam 235476047 BAM S29_L002_R1 submitted_unaligned CPTAC3 20153ffd-d532-457b-9806-18509d671c6f 21ef4df3858728c506a5afe179720baf {"aliquot_tag": "ALQ_431bafd7", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.miRNA-Seq.T.hg38 C3L-02127 LSCC miRNA-Seq tumor CPT0130270006 dac911b3-3edb-4ae9-aebf-36d40ebdcfb9_mirnaseq_gdc_realn.bam 221405100 BAM harmonized CPTAC3 28c2dde0-6117-4c4c-8358-000b1453a5b6 1e64e821b9b96295e8c5178d9a7dca33 {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.RNA-Seq.chimeric.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.chimeric.gdc_realn.bam 26162229 BAM chimeric harmonized CPTAC3 43465a87-dd53-4f82-ab90-ff6ef778f4e3 ead47cefa2ab7869b23578dab396026c {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.RNA-Seq.chimeric.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.chimeric.gdc_realn.bam 20578482 BAM chimeric harmonized CPTAC3 071586bd-1ba2-430b-b07b-f988b9eab9dd 2a868e87bec8847209d03d3c3ccdce38 {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.RNA-Seq.genomic.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.genomic.gdc_realn.bam 8839599012 BAM genomic harmonized CPTAC3 62d5f993-c87f-47de-b9d9-54d703c81a8e bb4e84c92357daeac8fd32948b350e57 {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.RNA-Seq.genomic.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.genomic.gdc_realn.bam 7085279116 BAM genomic harmonized CPTAC3 c5ee1831-e077-4d65-9e00-eddde81b73de 2d77b51128124311e138b89796228baa {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.RNA-Seq.S14_L004_R1.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 3915032456 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 9957ff37-0881-44a5-892b-fa8d3697c021 f81cafcd1265a952a187a3aa1bd00603 {"aliquot_tag": "ALQ_431bafd7", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.RNA-Seq.S14_L004_R2.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4181211727 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 3dce36d1-1b06-44c0-b873-f03f20211de0 70c7f63e79acc3567f92d4a2ad098b24 {"aliquot_tag": "ALQ_431bafd7", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.RNA-Seq.S3_L001_R1.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 2841702805 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 c4b9fd5d-3909-4c12-8990-cb87061b1380 246739eed48663e1fb88b87e25d9cc8f {"aliquot_tag": "ALQ_97b89443", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.RNA-Seq.S3_L001_R2.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 3041525879 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 8176ddcf-aac5-40dc-a77d-03995569d300 612f44b23bffd4ac71f50511850f78cf {"aliquot_tag": "ALQ_97b89443", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.RNA-Seq.transcriptome.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.transcriptome.gdc_realn.bam 10178772733 BAM transcriptome harmonized CPTAC3 b8703f9e-a2d3-4131-9c10-708646528456 29ecf90d9393628c175297f627aec911 {"aliquot_tag": "ALQ_431bafd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.RNA-Seq.transcriptome.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.transcriptome.gdc_realn.bam 7398487412 BAM transcriptome harmonized CPTAC3 aa82d367-9bef-4d02-a2ba-4659524224e6 56d54a65171faa15b20ae20c0c41d83c {"aliquot_tag": "ALQ_97b89443", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.WGS.A C3L-02127 LSCC WGS tissue_normal CPT0130310006 CPT0130310006.WholeGenome.RP-1303.bam 72236691527 BAM submitted_aligned CPTAC3 75d1e423-c026-4b55-a8e5-191dd56b007b 1300743801c878e629c9d635b0871668 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.WGS.A.hg38 C3L-02127 LSCC WGS tissue_normal CPT0130310006 ad26fa70-8b09-48f7-bb6b-df942821f368_wgs_gdc_realn.bam 105012116107 BAM harmonized CPTAC3 22c40f7a-50a2-4bbf-817c-292f69b9d0f5 898d9a076eb7ebedc74b1ee04cc0ef73 {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.WGS.N C3L-02127 LSCC WGS blood_normal CPT0130390002 CPT0130390002.WholeGenome.RP-1303.bam 56341457869 BAM submitted_aligned CPTAC3 671d8e8f-9210-45a6-93e4-86c55a3419c0 8d89a3d8352fc2b0e293705e5e8e2f1c {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02127.WGS.N.hg38 C3L-02127 LSCC WGS blood_normal CPT0130390002 5e39c390-85ac-4582-9f12-a6792994fc69_wgs_gdc_realn.bam 81925801403 BAM harmonized CPTAC3 caa9bd32-438d-4827-9835-351c908f2e9e a959f628da8203165cc2bdacf0a1b3c0 {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02127.WGS.T C3L-02127 LSCC WGS tumor CPT0130270009 CPT0130270009.WholeGenome.RP-1303.bam 59874928258 BAM submitted_aligned CPTAC3 7e7f69a0-e645-416f-9021-883149d8ead3 0873c23ebf70cc0bc8efd5c961e77f3d {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.WGS.T.hg38 C3L-02127 LSCC WGS tumor CPT0130270009 735d360a-8d51-45b9-817e-d97c12e86c0a_wgs_gdc_realn.bam 87027711471 BAM harmonized CPTAC3 95577ed9-ef52-4e17-aaf4-61d940480231 f113866a6630c0c95376b569a7de9396 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.WXS.A C3L-02127 LSCC WXS tissue_normal CPT0130310006 CPT0130310006.WholeExome.RP-1303.bam 25980309286 BAM submitted_aligned CPTAC3 aefbd553-d968-4477-9310-c7a08c5b360d 00be24ed73da21316ed0df9a2f5b58ee {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.WXS.A.hg38 C3L-02127 LSCC WXS tissue_normal CPT0130310006 ad26fa70-8b09-48f7-bb6b-df942821f368_wxs_gdc_realn.bam 35034813962 BAM harmonized CPTAC3 618028bc-272c-484b-bc85-0d3321ec3feb 572d36a98b41ca046b79ef9a7c1459ea {"aliquot_tag": "ALQ_d3a4b246", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02127.WXS.N C3L-02127 LSCC WXS blood_normal CPT0130390002 CPT0130390002.WholeExome.RP-1303.bam 26454152238 BAM submitted_aligned CPTAC3 7d47fd62-d45c-43f0-b58b-c522f8d91296 1bdcb909e6755f749833c7a4365b7785 {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02127.WXS.N.hg38 C3L-02127 LSCC WXS blood_normal CPT0130390002 5e39c390-85ac-4582-9f12-a6792994fc69_wxs_gdc_realn.bam 36129229246 BAM harmonized CPTAC3 e51e79c4-6465-4d37-834a-06eb40ebcfdc e63ea659fce854892917438bcb69163e {"aliquot_tag": "ALQ_e4b93d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02127.WXS.T C3L-02127 LSCC WXS tumor CPT0130270009 CPT0130270009.WholeExome.RP-1303.bam 32357133262 BAM submitted_aligned CPTAC3 d00b7dc0-8dbd-4595-a0d4-59f5970255a1 b2665a8a6fa8fd58295b4e0abc5b0031 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02127.WXS.T.hg38 C3L-02127 LSCC WXS tumor CPT0130270009 735d360a-8d51-45b9-817e-d97c12e86c0a_wxs_gdc_realn.bam 44656383085 BAM harmonized CPTAC3 c464bc7c-0990-477d-8ad0-c18fce5e8b70 6eeba310543f33b53deb706bc783b5f2 {"aliquot_tag": "ALQ_70789d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.MethArray.Green.T C3L-02129 LUAD Methylation_Array tumor CPT0130170012 203219650157_R04C01_Grn.idat 13676222 IDAT Green NA CPTAC3 4e8245fb-5cf3-44a1-86bc-20c4b59089c1 f31953a1e14b9be082744019653f4f20 {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.MethArray.Red.T C3L-02129 LUAD Methylation_Array tumor CPT0130170012 203219650157_R04C01_Red.idat 13676222 IDAT Red NA CPTAC3 662ab00c-0426-4daa-9a7e-ad7ead3d93a7 d7b5f380528a9fb19f1f5ccae64bf60f {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.miRNA-Seq.S28_L002_R1.T C3L-02129 LUAD miRNA-Seq tumor CPT0130170015 190813_UNC32-K00270_0196_AH5MCWBBXY_TAATCG_S28_L002_R1_001.unaln.bam 239292413 BAM S28_L002_R1 submitted_unaligned CPTAC3 5950b9a6-c7df-494e-b031-f75dff85f9a5 cb55ded7b4ba0cc98eee866236513c76 {"aliquot_tag": "ALQ_913e8616", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.miRNA-Seq.T.hg38 C3L-02129 LUAD miRNA-Seq tumor CPT0130170015 1864c1c4-11a4-4d0d-bc0d-7c28a5c2a5b7_mirnaseq_gdc_realn.bam 266404864 BAM harmonized CPTAC3 86d5089b-c255-4ba5-9f2f-f7a604809482 29b4028e213817fd211e53d19f57a129 {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.RNA-Seq.chimeric.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.chimeric.gdc_realn.bam 41050560 BAM chimeric harmonized CPTAC3 79945f22-80e2-4896-968f-1bf91a7b9e16 29989a6380e74bcfe23ad4e3b5e73abb {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.RNA-Seq.genomic.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.genomic.gdc_realn.bam 9236441100 BAM genomic harmonized CPTAC3 0b84726f-a0e9-4ae9-bd36-ace5e5c06970 915ff99dc2161e2636889e5f37b1cb6d {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.RNA-Seq.S14_L004_R1.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R1_001.fastq.gz 3661479542 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 510fed09-e6bd-4552-9aed-5cdbdd7f3455 b55925418a1d1585339bad8b69d2a08d {"aliquot_tag": "ALQ_913e8616", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.RNA-Seq.S14_L004_R2.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R2_001.fastq.gz 3982175347 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 08cd008c-0097-41a8-98a9-bcf66204ce25 ac4ccdfefcf1302a13bc7e80d5908c8a {"aliquot_tag": "ALQ_913e8616", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.RNA-Seq.transcriptome.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.transcriptome.gdc_realn.bam 8287017486 BAM transcriptome harmonized CPTAC3 f3cf8e8f-6bc2-457e-bb95-1124c6c22ad3 f68def1662a35fc4807d255c94035d35 {"aliquot_tag": "ALQ_913e8616", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.WGS.N C3L-02129 LUAD WGS blood_normal CPT0130250002 CPT0130250002.WholeGenome.RP-1303.bam 60585646851 BAM submitted_aligned CPTAC3 4902af61-ef23-4fdb-a17c-b3b21ee0f138 e06232534471cb8e3b6a81fc71bc5532 {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02129.WGS.N.hg38 C3L-02129 LUAD WGS blood_normal CPT0130250002 475e3abc-03e4-4447-b6ac-839fc068f5ea_wgs_gdc_realn.bam 87886343876 BAM harmonized CPTAC3 5a1e0a78-70c6-4118-a60c-4ef220ea1e8f fae0dbb491d6a849e635760bc859f14a {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02129.WGS.T C3L-02129 LUAD WGS tumor CPT0130170012 CPT0130170012.WholeGenome.RP-1303.bam 60695904226 BAM submitted_aligned CPTAC3 e061ff1a-f063-45c8-b850-d93e17911a58 a798969d5373d395ef56ae5eae595f0b {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.WGS.T.hg38 C3L-02129 LUAD WGS tumor CPT0130170012 5f10744c-0ae5-4f7e-a3bc-34a201b73375_wgs_gdc_realn.bam 86520391931 BAM harmonized CPTAC3 547fac6d-d3fe-4c63-ba95-8fdb364e5df8 7a8dcf7ebfa9ab596491cd88a23e30bf {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.WXS.N C3L-02129 LUAD WXS blood_normal CPT0130250002 CPT0130250002.WholeExome.RP-1303.bam 22841936688 BAM submitted_aligned CPTAC3 ab2480d9-c3c0-4f0a-afc7-ea6e5b27e541 75f5b9f3d2adaa839109af8adf8f798f {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02129.WXS.N.hg38 C3L-02129 LUAD WXS blood_normal CPT0130250002 475e3abc-03e4-4447-b6ac-839fc068f5ea_wxs_gdc_realn.bam 31165027289 BAM harmonized CPTAC3 d708f0fa-314a-48f6-a20c-60c78c15aa2e 30adb9330d820776ef3c51b71eec8bcf {"aliquot_tag": "ALQ_ea15033a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02129.WXS.T C3L-02129 LUAD WXS tumor CPT0130170012 CPT0130170012.WholeExome.RP-1303.bam 23429569181 BAM submitted_aligned CPTAC3 5f5432a7-e8e8-42d2-99be-6562654b733d ac3235af9096f05c8e175f22799392f4 {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02129.WXS.T.hg38 C3L-02129 LUAD WXS tumor CPT0130170012 5f10744c-0ae5-4f7e-a3bc-34a201b73375_wxs_gdc_realn.bam 32314276515 BAM harmonized CPTAC3 55b1ffba-76ba-4e18-9598-3f316509545c 0114a258314158fdeaf7e10faddf4621 {"aliquot_tag": "ALQ_f5a13b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.MethArray.Green.A C3L-02130 LSCC Methylation_Array tissue_normal CPT0130070006 203219760081_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bd48f61a-6186-4696-8fac-cb82f268c6d1 3a62ca8d232306e3cf86c89c47358d72 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.MethArray.Green.T C3L-02130 LSCC Methylation_Array tumor CPT0130030009 203219750071_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fff65125-d8e9-443c-9e9d-be7ca60e53f5 63eb0e905163151a2f3f2d3bfbb8faf0 {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.MethArray.Red.A C3L-02130 LSCC Methylation_Array tissue_normal CPT0130070006 203219760081_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 ec5d1732-9a91-45e0-ad27-a01af32d12af 03a42d6a674fda6b8587eaa5afcec074 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.MethArray.Red.T C3L-02130 LSCC Methylation_Array tumor CPT0130030009 203219750071_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5be2521f-1d01-4930-8763-eaa6b5ff1c8e da01ebf798b0e32e3b68ba6e543c0fab {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.miRNA-Seq.A.hg38 C3L-02130 LSCC miRNA-Seq tissue_normal CPT0130070009 27b0c0e9-d6c0-470e-820d-af7237efce21_mirnaseq_gdc_realn.bam 300462621 BAM harmonized CPTAC3 cdacca9a-bfe7-4d53-a2b5-d365265436cc bcc74effe7d80a0c98734d938cf6a111 {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.miRNA-Seq.S16_L001_R1.T C3L-02130 LSCC miRNA-Seq tumor CPT0130030006 181219_UNC31-K00269_0173_BHYGJJBBXX_CCGTCC_S16_L001_R1_001.unaln.bam 212302035 BAM S16_L001_R1 submitted_unaligned CPTAC3 ee01cb0b-2e9f-40f7-ae6e-07d890fb37ca 713857a55b6852e70c9ebf8e374a31b3 {"aliquot_tag": "ALQ_2ff09388", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.miRNA-Seq.S28_L002_R1.A C3L-02130 LSCC miRNA-Seq tissue_normal CPT0130070009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAACTA_S28_L002_R1_001.unaln.bam 269798808 BAM S28_L002_R1 submitted_unaligned CPTAC3 0d0528c1-df07-416e-9f3b-207179930332 b18b9d0427e976fd8c1025338e962174 {"aliquot_tag": "ALQ_4acf28d9", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.miRNA-Seq.T.hg38 C3L-02130 LSCC miRNA-Seq tumor CPT0130030006 f8cb59f3-dd72-4bf0-80fb-ace07a0effb5_mirnaseq_gdc_realn.bam 235791142 BAM harmonized CPTAC3 a005c82c-5c0e-42ac-a9c0-e7f4d4f5ccea dbf9f28826e826d813fb0e3259f75ac1 {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.RNA-Seq.chimeric.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.chimeric.gdc_realn.bam 29322562 BAM chimeric harmonized CPTAC3 5da11f1b-7d3f-461c-9028-d954cc79f25a 9afc3ed2cb39550cb197321a937f53c6 {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.RNA-Seq.chimeric.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.chimeric.gdc_realn.bam 29312648 BAM chimeric harmonized CPTAC3 0acfc0da-14d1-4b7c-9a97-49fea86dae32 e91bdbaec38d9dfc02e63454090cab44 {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.RNA-Seq.genomic.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.genomic.gdc_realn.bam 8310262144 BAM genomic harmonized CPTAC3 f9e360f3-1aba-47db-a2f1-b447a03d5db4 401d17d04706e7d5add9eb04c4fe5077 {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.RNA-Seq.genomic.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.genomic.gdc_realn.bam 9702220727 BAM genomic harmonized CPTAC3 f28fa833-bd23-43e6-b190-ca214cce44e0 825d4443fec53b06a514f680bf2b331a {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.RNA-Seq.S15_L004_R1.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 3917047406 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 cc1e3364-5b6f-4dc8-be97-3496bf3ba60d 1dd82c9733186e997500088f356cd2e3 {"aliquot_tag": "ALQ_4acf28d9", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.RNA-Seq.S15_L004_R2.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4154778989 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 34c7bf3f-2c72-4179-92da-1226ffc50028 d1b94adacee6ce64b64b69a986cbb9e5 {"aliquot_tag": "ALQ_4acf28d9", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.RNA-Seq.S32_L008_R1.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R1_001.fastq.gz 4141732636 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 67d963d6-5c15-4837-bfb3-a05ae934c587 e5e76fbe9a5c767816d27c53ececbaa8 {"aliquot_tag": "ALQ_2ff09388", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.RNA-Seq.S32_L008_R2.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R2_001.fastq.gz 4449174303 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 8633e580-d501-4c45-9e20-46a6251a4934 77bb2c7c9270d7184223667269fc17a3 {"aliquot_tag": "ALQ_2ff09388", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.RNA-Seq.transcriptome.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.transcriptome.gdc_realn.bam 10589584400 BAM transcriptome harmonized CPTAC3 bbe8aca1-d32d-4b10-bfbb-ae83e8264021 c3b86d89c2d4aeaa00f0355029feb58a {"aliquot_tag": "ALQ_4acf28d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.RNA-Seq.transcriptome.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.transcriptome.gdc_realn.bam 12440581893 BAM transcriptome harmonized CPTAC3 b564c588-88a6-484b-b218-4b4af1a121ad cb6d0a9e83c6b1460623e5daf4ebf9a6 {"aliquot_tag": "ALQ_2ff09388", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.WGS.A C3L-02130 LSCC WGS tissue_normal CPT0130070006 CPT0130070006.WholeGenome.RP-1303.bam 54498950725 BAM submitted_aligned CPTAC3 9c4eee78-b063-42e7-996b-a25212cd3512 b77e1d627a5af09aea3041b7560faeec {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.WGS.A.hg38 C3L-02130 LSCC WGS tissue_normal CPT0130070006 5c4867de-abc1-4ab3-8bb5-07733e3b7008_wgs_gdc_realn.bam 79528417690 BAM harmonized CPTAC3 da1049ff-fde1-4fe0-bb79-228b165b09d4 1e8c814b7f5d45c719af3995975ca41d {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.WGS.N C3L-02130 LSCC WGS blood_normal CPT0130150002 CPT0130150002.WholeGenome.RP-1303.bam 54597845065 BAM submitted_aligned CPTAC3 72a6b351-35bb-4315-9948-3d928ed4a33e 6f0a7b34ce1d21c32cf4be1554e43a30 {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02130.WGS.N.hg38 C3L-02130 LSCC WGS blood_normal CPT0130150002 c742c34f-6323-463f-97b2-8670c2f4e950_wgs_gdc_realn.bam 79570021758 BAM harmonized CPTAC3 8490c690-dac7-4a72-b2bf-1991fbe05c36 ba2bd9342dcb0bd05fcf3536b82094a1 {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02130.WGS.T C3L-02130 LSCC WGS tumor CPT0130030009 CPT0130030009.WholeGenome.RP-1303.bam 57445643489 BAM submitted_aligned CPTAC3 82f42504-5d7e-43b7-81a2-41fa109eb385 5e5dc73eb4f530a3fb5620e8e012073e {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.WGS.T.hg38 C3L-02130 LSCC WGS tumor CPT0130030009 d8ab669a-e58a-4f91-8d3a-0ab143c4a2ad_wgs_gdc_realn.bam 84163312700 BAM harmonized CPTAC3 6d9c3c11-0d28-481a-9392-86755de63ad3 fe594a254c078f8395736d3bdec8c550 {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.WXS.A C3L-02130 LSCC WXS tissue_normal CPT0130070006 CPT0130070006.WholeExome.RP-1303.bam 26173733731 BAM submitted_aligned CPTAC3 85fa515f-4aff-43c1-9921-96abafbda279 792d13e65e8ae0987e295e17f6182537 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.WXS.A.hg38 C3L-02130 LSCC WXS tissue_normal CPT0130070006 5c4867de-abc1-4ab3-8bb5-07733e3b7008_wxs_gdc_realn.bam 35778833954 BAM harmonized CPTAC3 6613cf8f-3279-41cf-90b8-63e39e604e8e b5e7a7d73e50ac963573d085950d5857 {"aliquot_tag": "ALQ_da703548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02130.WXS.N C3L-02130 LSCC WXS blood_normal CPT0130150002 CPT0130150002.WholeExome.RP-1303.bam 36624186917 BAM submitted_aligned CPTAC3 8c5ae47d-97d6-4ed3-bb1d-3f4e93ec7d47 7a92e8622f2c44cf215edb3dc4b6d993 {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02130.WXS.N.hg38 C3L-02130 LSCC WXS blood_normal CPT0130150002 c742c34f-6323-463f-97b2-8670c2f4e950_wxs_gdc_realn.bam 49700178986 BAM harmonized CPTAC3 22df6e39-0947-4591-82c0-6be07cbb8dbe e1774ab2078375f560246784eb66798f {"aliquot_tag": "ALQ_6c817194", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02130.WXS.T C3L-02130 LSCC WXS tumor CPT0130030009 CPT0130030009.WholeExome.RP-1303.bam 31273765628 BAM submitted_aligned CPTAC3 e931cf02-874a-4512-9f98-dce8dd42575c cf3d4f42fb9c2bf3a68a815c98573680 {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02130.WXS.T.hg38 C3L-02130 LSCC WXS tumor CPT0130030009 d8ab669a-e58a-4f91-8d3a-0ab143c4a2ad_wxs_gdc_realn.bam 42913664306 BAM harmonized CPTAC3 a8b8f6dd-6bba-4cb8-9e54-0b994c32c452 a120ebc05f965c43097608a34f7b0d2a {"aliquot_tag": "ALQ_bf4f8e19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02132.MethArray.Green.Tbm C3L-02132 AML Methylation_Array tumor_bone_marrow CPT0166390002 203561450073_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62489ff6-d3ef-4bdb-acc2-a1d987ae15da 4e8d1d37e8ce444dca822fa2d6d8594e {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.MethArray.Red.Tbm C3L-02132 AML Methylation_Array tumor_bone_marrow CPT0166390002 203561450073_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 f7ed3484-ee2d-46ee-baae-bd5e42634619 f7f9e569ee846cfca04fd5c3d28e5552 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.miRNA-Seq.S23_L001_R1.Tbm C3L-02132 AML miRNA-Seq tumor_bone_marrow CPT0166400002 190508_UNC31-K00269_0215_BH7FYKBBXY_GAGTGG_S23_L001_R1_001.unaln.bam 224626564 BAM S23_L001_R1 submitted_unaligned CPTAC3 2c892be2-0f25-4124-9ee4-f9ef0297af38 d9daab35a3ccf3cfcdce146608fb5751 {"aliquot_tag": "ALQ_df9c5409", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.miRNA-Seq.Tbm.hg38 C3L-02132 AML miRNA-Seq tumor_bone_marrow CPT0166400002 045cdf65-de62-454d-82d0-bbde2cb7a8d4_mirnaseq_gdc_realn.bam 248262404 BAM harmonized CPTAC3 0c134d0b-fbb5-475c-80c5-b55d40ed13e5 1c5a97f6c87f7cb0bb3843716ab4e937 {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.RNA-Seq.chimeric.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.chimeric.gdc_realn.bam 36900317 BAM chimeric harmonized CPTAC3 6a489844-6894-47d6-9842-e6b0da252a93 33d46845888a581e2553ce3489fd1333 {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.RNA-Seq.genomic.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.genomic.gdc_realn.bam 9168018809 BAM genomic harmonized CPTAC3 6303ff9d-25bc-4d9e-a114-bd07d7a23a17 fe5e8eb19d566553f92acb7bcbd65105 {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.RNA-Seq.S41_L007_R1.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R1_001.fastq.gz 4402299308 FASTQ S41_L007_R1 submitted_unaligned CPTAC3 5ced447e-e845-49a9-b617-bd26a1eae460 28cfccb8e77f6999e2dd9483b3051bfb {"aliquot_tag": "ALQ_df9c5409", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.RNA-Seq.S41_L007_R2.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R2_001.fastq.gz 5022283422 FASTQ S41_L007_R2 submitted_unaligned CPTAC3 db5d73c2-53c6-4ba8-9fa4-255cd1a208fd 613bc36426a0db8c25442900d5de07f6 {"aliquot_tag": "ALQ_df9c5409", "sample": "S41", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.RNA-Seq.transcriptome.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.transcriptome.gdc_realn.bam 11649027096 BAM transcriptome harmonized CPTAC3 4b4530ab-b074-45be-b142-8b8e4fa5931f 2c0902c989a9baf16cbcd989c3ecfb5f {"aliquot_tag": "ALQ_df9c5409", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.WGS.Nbc C3L-02132 AML WGS buccal_normal CPT0166490003 CPT0166490003.WholeGenome.RP-1303.bam 66785394922 BAM submitted_aligned CPTAC3 a96fd759-37a7-40e6-8d08-ee0663269e50 6a3d0f762b9099132f00a517c2fd1dd6 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02132.WGS.Nbc.hg38 C3L-02132 AML WGS buccal_normal CPT0166490003 baa4fc21-86c9-493d-bf8c-a097720cf807_wgs_gdc_realn.bam 95512500931 BAM harmonized CPTAC3 8daf64b3-8a34-4191-a33e-4b6b6c38592f 565abfdbfa1c7e3db7d685e66a3d3c86 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002_1 CPT0166390002_1.WholeGenome.RP-1303.bam 69862755075 BAM submitted_aligned CPTAC3 520e8c0a-2acb-4f74-8f27-2a4fa497a7af 493a63ed96e40162b986c089eb4bee69 {"aliquot_tag": "ALQ_fbdeeac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 CPT0166390002.WholeGenome.RP-1303.bam 26137683857 BAM submitted_aligned CPTAC3 37fa043b-64db-419d-8042-713e5097c910 01452d76f9db936e33ba2d56ed65e014 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.WGS.Tbm.hg38 C3L-02132 AML WGS tumor_bone_marrow CPT0166390002_1 3de89c45-6ec1-4509-b9e8-6a3e8d874eac_wgs_gdc_realn.bam 103302272675 BAM harmonized CPTAC3 78c5577f-05e9-46c6-9376-5ee607145665 0c7c44a8f580fa2bc655edd3300fc34f {"aliquot_tag": "ALQ_fbdeeac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-02132.WGS.Tbm.hg38 C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 5ebcb838-b5be-4a97-83ad-ee91f207b385_wgs_gdc_realn.bam 35974705542 BAM harmonized CPTAC3 85d7287e-1a59-4f46-bb72-b244838ff573 b1f45d0b0240723de5c84c101a51eb53 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.WXS.Nbc C3L-02132 AML WXS buccal_normal CPT0166490003 CPT0166490003.WholeExome.RP-1303.bam 25321497026 BAM submitted_aligned CPTAC3 2615c697-f758-4edf-96f4-2fd271a22c61 1f388eb31ac56025f506c6ed2f8f4646 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02132.WXS.Nbc.hg38 C3L-02132 AML WXS buccal_normal CPT0166490003 baa4fc21-86c9-493d-bf8c-a097720cf807_wxs_gdc_realn.bam 35166611065 BAM harmonized CPTAC3 944c53f5-4f80-46ae-ac76-fed39b14b783 9bb72d1a9bc4d15b711981a43ce2f859 {"aliquot_tag": "ALQ_a58b06ee", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02132.WXS.Tbm C3L-02132 AML WXS tumor_bone_marrow CPT0166390002 CPT0166390002.WholeExome.RP-1303.bam 26137683925 BAM submitted_aligned CPTAC3 bb0efc8a-b390-4dbe-a702-4db8d43478f1 0697527e15187d152852d71d0e409886 {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02132.WXS.Tbm.hg38 C3L-02132 AML WXS tumor_bone_marrow CPT0166390002 5ebcb838-b5be-4a97-83ad-ee91f207b385_wxs_gdc_realn.bam 36002080635 BAM harmonized CPTAC3 1c3ecf5e-2355-4379-9ec4-cd5543003f4d 2ff521ca0a51b85db60d7f85e45c122a {"aliquot_tag": "ALQ_cf8906c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.MethArray.Green.Tbm C3L-02135 AML Methylation_Array tumor_bone_marrow CPT0200830002 203561450017_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a7db38d2-a69d-4690-8e64-f8e42d233c20 f8bc13d353ba6e8115dd9213f9665533 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.MethArray.Red.Tbm C3L-02135 AML Methylation_Array tumor_bone_marrow CPT0200830002 203561450017_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 3d4a8155-3fd2-467b-9d0e-b1504948450c 18f63d30bf5e3ea7759ff45903fb36ea {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.miRNA-Seq.S28_L002_R1.Tbm C3L-02135 AML miRNA-Seq tumor_bone_marrow CPT0200840002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAAAAG_S28_L002_R1_001.unaln.bam 265210622 BAM S28_L002_R1 submitted_unaligned CPTAC3 8e435e18-48b5-4be8-ae7a-3fe71929f2da 4c4d0ffd87c619dc37bf9dc67cef1e8d {"aliquot_tag": "ALQ_c1ec32ca", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.miRNA-Seq.Tbm.hg38 C3L-02135 AML miRNA-Seq tumor_bone_marrow CPT0200840002 5696161b-eaec-4e97-a553-948c4fb8d473_mirnaseq_gdc_realn.bam 312092119 BAM harmonized CPTAC3 956d66e6-9f62-4b41-8ce8-7ded3d9ae533 2ba7a461f38a0236985a70634589f7de {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.RNA-Seq.chimeric.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.chimeric.gdc_realn.bam 44753755 BAM chimeric harmonized CPTAC3 0de4f969-05fb-4d58-9f97-c1b13277bb91 74ccdf46c1e0f0d0ddc703c210bb62db {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.RNA-Seq.genomic.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.genomic.gdc_realn.bam 8732647369 BAM genomic harmonized CPTAC3 85c82043-3285-4421-a2e9-0c309feb7f12 c3550b820bed2d57016bcad71e0064cb {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.RNA-Seq.S22_L006_R1.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R1_001.fastq.gz 4158410268 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 fec039da-21f5-4b68-8a65-3859f6aca7ca bcba513e38c12af9e7238b12a615b4f5 {"aliquot_tag": "ALQ_c1ec32ca", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.RNA-Seq.S22_L006_R2.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R2_001.fastq.gz 4847420316 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 abe55041-2ae7-40eb-8ccc-6c5a2cae51fb 25d1836e59cbde273cd6ef4a84173134 {"aliquot_tag": "ALQ_c1ec32ca", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.RNA-Seq.transcriptome.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.transcriptome.gdc_realn.bam 8344014008 BAM transcriptome harmonized CPTAC3 562f922d-27c1-4244-a53a-227169975312 ea59404f44bbfa8190060a639028548c {"aliquot_tag": "ALQ_c1ec32ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.WGS.Nbc C3L-02135 AML WGS buccal_normal CPT0200930006 CPT0200930006.WholeGenome.RP-1303.bam 94613467073 BAM submitted_aligned CPTAC3 17f377a7-202d-4773-b656-0948e15ef0ef 5b87130e0db21fe84e2e2c0937facd51 {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02135.WGS.Nbc.hg38 C3L-02135 AML WGS buccal_normal CPT0200930006 a5ec5e8b-c663-4691-aa2d-4a3d1a6f8488_wgs_gdc_realn.bam 136567337787 BAM harmonized CPTAC3 c9d4d913-31bd-4903-9df4-f09fdb1303f4 6f00ae7c51e01c22864d36192f24a89e {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02135.WGS.Tbm C3L-02135 AML WGS tumor_bone_marrow CPT0200830002 CPT0200830002.WholeGenome.RP-1303.bam 85714834242 BAM submitted_aligned CPTAC3 6dea8d70-422f-49a2-9c57-4209acc1f5a8 2f1f6fa0e5d4e6ceca83b8bf445c1c13 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.WGS.Tbm.hg38 C3L-02135 AML WGS tumor_bone_marrow CPT0200830002 9a5cd084-731d-474f-9d8d-088af9f0731c_wgs_gdc_realn.bam 125556447074 BAM harmonized CPTAC3 2acdb97f-754a-4cb9-acb6-f113aa9ae369 02a038d23c7a8bd7303ba4653c81bd95 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.WXS.Nbc C3L-02135 AML WXS buccal_normal CPT0200930006 CPT0200930006.WholeExome.RP-1303.bam 31185544566 BAM submitted_aligned CPTAC3 3f72103b-68e0-4ed1-9bfb-4ebc00390f1c dd0a6fe3cf4f6e9535dfd6f561048284 {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02135.WXS.Nbc.hg38 C3L-02135 AML WXS buccal_normal CPT0200930006 a5ec5e8b-c663-4691-aa2d-4a3d1a6f8488_wxs_gdc_realn.bam 43153393135 BAM harmonized CPTAC3 b67743e8-1d2b-41c4-8804-cafc31c7dfd4 9f6606398ec4b3995eda4d0135c2e980 {"aliquot_tag": "ALQ_bffdf966", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02135.WXS.Tbm C3L-02135 AML WXS tumor_bone_marrow CPT0200830002 CPT0200830002.WholeExome.RP-1303.bam 24078705991 BAM submitted_aligned CPTAC3 94891d00-196e-4c89-860c-150ec13910f2 770a26c3459a145a13670cf9b88a2915 {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02135.WXS.Tbm.hg38 C3L-02135 AML WXS tumor_bone_marrow CPT0200830002 9a5cd084-731d-474f-9d8d-088af9f0731c_wxs_gdc_realn.bam 33960767507 BAM harmonized CPTAC3 d81d0a6f-c812-4a35-bff1-4b2a8795d532 9bc5a84b9be0cb0298e8a2a430fa0aee {"aliquot_tag": "ALQ_73cceeda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.MethArray.Green.Tbm C3L-02136 AML Methylation_Array tumor_bone_marrow CPT0230490001 203561620089_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 8f26f53c-abb2-44bc-8695-a3bde663ab20 9d120527e8e514e4cb67c90e2cec3cef {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.MethArray.Red.Tbm C3L-02136 AML Methylation_Array tumor_bone_marrow CPT0230490001 203561620089_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 da80bfb3-931f-4015-aadd-b09f899c2c0e 64f12eeb9afb7f46db9f11c42149f59e {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.miRNA-Seq.S33_L002_R1.Tbm C3L-02136 AML miRNA-Seq tumor_bone_marrow CPT0230500002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGGCG_S33_L002_R1_001.unaln.bam 197324017 BAM S33_L002_R1 submitted_unaligned CPTAC3 f20bbfbf-e033-41b9-b015-62078740293c 175c3d7a69c8644fc5133a781638aad5 {"aliquot_tag": "ALQ_67d8037", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.miRNA-Seq.Tbm.hg38 C3L-02136 AML miRNA-Seq tumor_bone_marrow CPT0230500002 55ef6cd2-cf75-4bbe-b85c-712a7b1f4bd9_mirnaseq_gdc_realn.bam 225196754 BAM harmonized CPTAC3 b64b028a-398c-4272-a69e-5051f3d0158b 2c029d482289578780e8180167657455 {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.RNA-Seq.chimeric.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.chimeric.gdc_realn.bam 37614216 BAM chimeric harmonized CPTAC3 e02a0c20-8dc7-4e03-af3f-fcf74f0623d3 3660800f834f357e6165c11c3a7ba89b {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.RNA-Seq.genomic.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.genomic.gdc_realn.bam 8411859891 BAM genomic harmonized CPTAC3 4b354905-8ac1-4719-8b3b-e993d38650a2 fb06261c2b4604ea95da9c5b86684c99 {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.RNA-Seq.S24_L008_R1.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R1_001.fastq.gz 4055831703 FASTQ S24_L008_R1 submitted_unaligned CPTAC3 93909162-a668-410b-8941-d515c441dd77 67534072d9a498cf421c6ac4a0dd3b16 {"aliquot_tag": "ALQ_67d8037", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.RNA-Seq.S24_L008_R2.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R2_001.fastq.gz 4695840850 FASTQ S24_L008_R2 submitted_unaligned CPTAC3 b1063253-4dc8-4b9f-8a58-cc0a86a8be4c dd207f5449155ad6033c8f723decd4bb {"aliquot_tag": "ALQ_67d8037", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.RNA-Seq.transcriptome.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.transcriptome.gdc_realn.bam 10174893559 BAM transcriptome harmonized CPTAC3 772f9fad-f617-4ae6-b035-80085f364fe9 61048e65aac0b7113e8c7318a778e1dd {"aliquot_tag": "ALQ_67d8037", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.WGS.Tbm C3L-02136 AML WGS tumor_bone_marrow CPT0230490001 CPT0230490001.WholeGenome.RP-1303.bam 78296980483 BAM submitted_aligned CPTAC3 06e7712c-8d5b-4395-8bae-2b6445a787cd 7e907cbee3666f6e92280ea35f58536e {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.WGS.Tbm.hg38 C3L-02136 AML WGS tumor_bone_marrow CPT0230490001 a91e6365-7948-4ae6-b105-3ce45da83555_wgs_gdc_realn.bam 116860046661 BAM harmonized CPTAC3 e36d8313-abf7-49ae-9960-268a9a234493 6955e077684bf9a5ea8a46ac7cac5770 {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.WXS.Nbc C3L-02136 AML WXS buccal_normal CPT0230590002 CPT0230590002.WholeExome.RP-1303.bam 23615636918 BAM submitted_aligned CPTAC3 43ecffb5-d0e0-451a-87c2-dd10438e632f d9231ad9ed08d47347078fe7c1365069 {"aliquot_tag": "ALQ_b6de246", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02136.WXS.Nbc.hg38 C3L-02136 AML WXS buccal_normal CPT0230590002 04809c7c-238b-40b5-a87f-3c37e75545cf_wxs_gdc_realn.bam 33075538427 BAM harmonized CPTAC3 ef54310e-87bb-46f0-b8ba-c029b4be97cc 8197745270131887e4b969f46e4330b8 {"aliquot_tag": "ALQ_b6de246", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02136.WXS.Tbm C3L-02136 AML WXS tumor_bone_marrow CPT0230490001 CPT0230490001.WholeExome.RP-1303.bam 25432740364 BAM submitted_aligned CPTAC3 ca7a576f-f5c7-41e5-9adc-54dbf9b3ed71 6f8e75540f6abdea59ab640d1fb51cc9 {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02136.WXS.Tbm.hg38 C3L-02136 AML WXS tumor_bone_marrow CPT0230490001 a91e6365-7948-4ae6-b105-3ce45da83555_wxs_gdc_realn.bam 35381787903 BAM harmonized CPTAC3 fe10d155-2ee0-43e9-ad96-bb770e51f219 928650dc90f4dc9b96e4b49038bd5a7d {"aliquot_tag": "ALQ_59386059", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.MethArray.Green.Tbm C3L-02137 AML Methylation_Array tumor_bone_marrow CPT0201080002 203561620153_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 7fe34bf4-f898-4db3-a604-81486a5e5700 dfb8a915f7e9d1bda70754b59a76a220 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.MethArray.Red.Tbm C3L-02137 AML Methylation_Array tumor_bone_marrow CPT0201080002 203561620153_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 df33c0ab-09ab-4ab7-ad53-8e9626e38233 8394d18967769906933914301932d3db {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.miRNA-Seq.S29_L002_R1.Tbm C3L-02137 AML miRNA-Seq tumor_bone_marrow CPT0201090002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAACTA_S29_L002_R1_001.unaln.bam 236898385 BAM S29_L002_R1 submitted_unaligned CPTAC3 f1be098d-ae0a-4a1c-adcd-12080da5bc6a 98cfc9d8eb5cd77d45f215c1a4101b89 {"aliquot_tag": "ALQ_73587fa2", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.miRNA-Seq.Tbm.hg38 C3L-02137 AML miRNA-Seq tumor_bone_marrow CPT0201090002 cf87ae14-740d-4064-bf50-e99d12db6189_mirnaseq_gdc_realn.bam 249534340 BAM harmonized CPTAC3 b848bcc2-e071-405f-a7c0-09466578adc9 18d7a8c0dafc4290175acb47c12077d2 {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.RNA-Seq.chimeric.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.chimeric.gdc_realn.bam 37060120 BAM chimeric harmonized CPTAC3 4e2920c4-2bf6-4b58-adb9-34bd9343a317 ce877d5e37e82ed2261f98e76197e30a {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.RNA-Seq.genomic.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.genomic.gdc_realn.bam 8391637479 BAM genomic harmonized CPTAC3 bf3765b6-62c6-4842-9b4a-1294d154e677 d8b0e8015629a0efe85af317c6c72615 {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.RNA-Seq.S2_L007_R1.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R1_001.fastq.gz 3695423280 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 ff7ac451-2cf4-4e4a-b9ea-e931703cc80c 4eaaa8f628a3156282c1743ad328a0b3 {"aliquot_tag": "ALQ_73587fa2", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.RNA-Seq.S2_L007_R2.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R2_001.fastq.gz 4055355031 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 c21ae1be-157e-4641-8e90-886929f1a59d 63d44be17d68252ca1360ad2965da74a {"aliquot_tag": "ALQ_73587fa2", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.RNA-Seq.transcriptome.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.transcriptome.gdc_realn.bam 11203758229 BAM transcriptome harmonized CPTAC3 09d9e30f-3fb6-42d0-9082-e48b4fbce998 4b2d901b91f99e21da137b021c9e19de {"aliquot_tag": "ALQ_73587fa2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.WGS.Tbm C3L-02137 AML WGS tumor_bone_marrow CPT0201080002 CPT0201080002.WholeGenome.RP-1303.bam 59522615984 BAM submitted_aligned CPTAC3 333ae522-3bcd-4cb5-aff1-71dd16888993 b9d680a917fb112cba2eea0ed1c2a0d9 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.WGS.Tbm.hg38 C3L-02137 AML WGS tumor_bone_marrow CPT0201080002 3ee3c9e8-3e28-4f35-b7d7-d90497a50bdb_wgs_gdc_realn.bam 86778064337 BAM harmonized CPTAC3 085f975e-7081-44d8-ab72-cb1341ba9ee7 525387dfd2088720736ffb15230481b7 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.WXS.Nbc C3L-02137 AML WXS buccal_normal CPT0201120003 CPT0201120003.WholeExome.RP-1303.bam 26684903177 BAM submitted_aligned CPTAC3 10583595-74c3-4d4d-867a-eec0337e54bc 2922a2ae9db6de52bdb19f22087cc032 {"aliquot_tag": "ALQ_b8d3ad80", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02137.WXS.Nbc.hg38 C3L-02137 AML WXS buccal_normal CPT0201120003 f9fa6343-7ebe-4ffe-8de1-77a88e06609b_wxs_gdc_realn.bam 36434313363 BAM harmonized CPTAC3 dbc64b57-2e3c-41c5-b4f3-c37d2ea0526c 6de7738cf13378414c8ab2bd2e16f6b8 {"aliquot_tag": "ALQ_b8d3ad80", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02137.WXS.Tbm C3L-02137 AML WXS tumor_bone_marrow CPT0201080002 CPT0201080002.WholeExome.RP-1303.bam 22950235854 BAM submitted_aligned CPTAC3 1fd45bae-9812-47c6-ae46-e57ff6309176 031471402d788925104571a157f4ed59 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02137.WXS.Tbm.hg38 C3L-02137 AML WXS tumor_bone_marrow CPT0201080002 3ee3c9e8-3e28-4f35-b7d7-d90497a50bdb_wxs_gdc_realn.bam 32415068495 BAM harmonized CPTAC3 c595f4b2-cd8a-460e-8cc2-524b6c1133b0 659568d6210a84f1dd7b7794d4739a09 {"aliquot_tag": "ALQ_4e385612", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-02163.MethArray.Green.A C3L-02163 LSCC Methylation_Array tissue_normal CPT0175160006 203219650217_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 80ba4c4b-5c08-442c-80ca-721d035e126b 2379fd0ca3a137a71d15b853e0f56a5d {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.MethArray.Green.T C3L-02163 LSCC Methylation_Array tumor CPT0175120006 203219650042_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d04ff12a-4b8c-4aef-9dd8-b60d6d8b4e2f 7648edac9af3e5e42bf41d60605aef6e {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.MethArray.Red.A C3L-02163 LSCC Methylation_Array tissue_normal CPT0175160006 203219650217_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a0b89978-6bf3-4f66-a14e-aa2fbbce5efe 410778da6e81380331fd53f1920fcb3d {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.MethArray.Red.T C3L-02163 LSCC Methylation_Array tumor CPT0175120006 203219650042_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 a45dc5f9-40df-44dd-820d-6641aedf16a9 f6c295450e391b968c4487a5e817b0cc {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.miRNA-Seq.A.hg38 C3L-02163 LSCC miRNA-Seq tissue_normal CPT0175160009 c6b5b81d-778d-4067-97f5-dd04fafdd3d6_mirnaseq_gdc_realn.bam 306200260 BAM harmonized CPTAC3 bd94e759-456c-4c22-aa67-2184b4987c63 2c23cea3fb7b6f5eb8f0c8e71d16de18 {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.miRNA-Seq.S14_L003_R1.T C3L-02163 LSCC miRNA-Seq tumor CPT0175120013 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTTCC_S14_L003_R1_001.unaln.bam 271741362 BAM S14_L003_R1 submitted_unaligned CPTAC3 74173675-5dbe-4c23-9a2c-5247bda2eb11 3d684a9a1524bcb943536817ef0040cc {"aliquot_tag": "ALQ_66cf8d0e", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.miRNA-Seq.S2_L003_R1.A C3L-02163 LSCC miRNA-Seq tissue_normal CPT0175160009 181219_UNC31-K00269_0173_BHYGJJBBXX_CGATGT_S2_L003_R1_001.unaln.bam 273008373 BAM S2_L003_R1 submitted_unaligned CPTAC3 4016e10d-1c19-42e7-821e-11fbbab09dcf b059b78ef540ecfbbd96e72da8a02ad5 {"aliquot_tag": "ALQ_6a81f391", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.miRNA-Seq.T.hg38 C3L-02163 LSCC miRNA-Seq tumor CPT0175120013 a380422d-93ef-41cb-9997-6cf86df9e91b_mirnaseq_gdc_realn.bam 307425784 BAM harmonized CPTAC3 0ad3e93e-3fd6-4354-aa7f-071e32ac66e2 3f05cee582b98d6a4f0289cac1f08589 {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.RNA-Seq.chimeric.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.chimeric.gdc_realn.bam 257206250 BAM chimeric harmonized CPTAC3 ce9159f4-8365-4522-bffd-196f634ea1ec 6ac9939c9ce2fe008d3f36924d44f48d {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.RNA-Seq.chimeric.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.chimeric.gdc_realn.bam 191611105 BAM chimeric harmonized CPTAC3 e5edbb26-f58c-4f7a-9237-d3419f9dcf0c 7389959d029ad21ae850853024d90946 {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.RNA-Seq.genomic.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.genomic.gdc_realn.bam 9287726953 BAM genomic harmonized CPTAC3 3b32a10e-cf2d-448f-859c-d2e8965d0f4e 0ac72d10078941c8b578748b7fb633ab {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.RNA-Seq.genomic.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.genomic.gdc_realn.bam 8867089698 BAM genomic harmonized CPTAC3 c7cd03e6-ce7a-4510-b2c0-427753fe00b3 6c6052af004092ff2c805e9859b5a2a7 {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.RNA-Seq.S24_L005_R1.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R1_001.fastq.gz 4308966579 FASTQ S24_L005_R1 submitted_unaligned CPTAC3 3978c40c-51ea-4f84-94e7-a6d7f60e9a95 67659cab75c0e85a419c86248d8c8258 {"aliquot_tag": "ALQ_66cf8d0e", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.RNA-Seq.S24_L005_R2.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R2_001.fastq.gz 4496269577 FASTQ S24_L005_R2 submitted_unaligned CPTAC3 3a1d8ee4-8c8c-410d-8e7a-326284afefb7 3d6d33c909bf7a948a8d876f86bef035 {"aliquot_tag": "ALQ_66cf8d0e", "sample": "S24", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.RNA-Seq.S2_L001_R1.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4325631110 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 9749e6bc-0bb0-40c9-aec9-faa83eeac92e f78749892d0b5d66e3fac0ee6b629a6f {"aliquot_tag": "ALQ_6a81f391", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.RNA-Seq.S2_L001_R2.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4820026408 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 98e55f73-432c-421b-b9b6-10ed1c73806e 96755a9a0730e043a618b62a09ce3eef {"aliquot_tag": "ALQ_6a81f391", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.RNA-Seq.transcriptome.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.transcriptome.gdc_realn.bam 12006645997 BAM transcriptome harmonized CPTAC3 71c3220a-0b5e-423e-af9b-c72914b10ac7 4df542983cde56d5d64b5f321f1bfb9b {"aliquot_tag": "ALQ_6a81f391", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.RNA-Seq.transcriptome.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.transcriptome.gdc_realn.bam 11874627262 BAM transcriptome harmonized CPTAC3 ec6387a8-12d7-4e7a-b4b9-5cdc39641bd3 b9492082a81f1b21f6599c820e40f24c {"aliquot_tag": "ALQ_66cf8d0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.WGS.A C3L-02163 LSCC WGS tissue_normal CPT0175160006 CPT0175160006.WholeGenome.RP-1303.bam 61915495832 BAM submitted_aligned CPTAC3 77257365-8bef-4cf4-8f44-bbcccf5885a6 674dcd51a62964f7c19af9ae74d93d55 {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.WGS.A.hg38 C3L-02163 LSCC WGS tissue_normal CPT0175160006 9715fe8d-bfc1-49ce-8853-64f8fbd52500_wgs_gdc_realn.bam 89736103072 BAM harmonized CPTAC3 18e6fdeb-a177-4af1-8f31-55555d90d95b 39fea8133a05259be4a81312828f1cf3 {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.WGS.N C3L-02163 LSCC WGS blood_normal CPT0175220002 CPT0175220002.WholeGenome.RP-1303.bam 58510770763 BAM submitted_aligned CPTAC3 09955940-c9d8-4058-a839-83fd9bcdcc8a ed0ac25f9d7bb2b5918def7ac3fe642b {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02163.WGS.N.hg38 C3L-02163 LSCC WGS blood_normal CPT0175220002 3d1292bd-dfff-44c5-a6ad-b4bb3452f79c_wgs_gdc_realn.bam 84456783103 BAM harmonized CPTAC3 b3e28b59-bc29-4464-8d3d-205a7ead299c 749bd1a80fe24e18f6cc4be47bf8f398 {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02163.WGS.T C3L-02163 LSCC WGS tumor CPT0175120006 CPT0175120006.WholeGenome.RP-1303.bam 59541845706 BAM submitted_aligned CPTAC3 a642ddb4-f191-43e9-8043-6612d965ef2d b768bd9e8ff22ca4e927de1be4307405 {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.WGS.T.hg38 C3L-02163 LSCC WGS tumor CPT0175120006 c3fcf397-78d9-40cb-a915-24bbc9a5cb59_wgs_gdc_realn.bam 86351879621 BAM harmonized CPTAC3 b08c1b94-78fd-455d-84f9-dd84d222979c 45dbb162bd7404b03050b9500ceddda4 {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.WXS.A C3L-02163 LSCC WXS tissue_normal CPT0175160006 CPT0175160006.WholeExome.RP-1303.bam 23104787420 BAM submitted_aligned CPTAC3 9e844354-5aa2-4585-9ec7-32982453e342 6930c3935bd3904ce351a5533ae66e03 {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.WXS.A.hg38 C3L-02163 LSCC WXS tissue_normal CPT0175160006 9715fe8d-bfc1-49ce-8853-64f8fbd52500_wxs_gdc_realn.bam 31259166407 BAM harmonized CPTAC3 ee6607c9-511d-4511-b667-05f82ebafb14 451440741bb51d946b9b250e5dd215fc {"aliquot_tag": "ALQ_fa3eee00", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02163.WXS.N C3L-02163 LSCC WXS blood_normal CPT0175220002 CPT0175220002.WholeExome.RP-1303.bam 26190573158 BAM submitted_aligned CPTAC3 760aec27-ff6c-41ea-a774-0640c71da8c7 87d154cc5e2d6ae4c87201350e0c2888 {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02163.WXS.N.hg38 C3L-02163 LSCC WXS blood_normal CPT0175220002 3d1292bd-dfff-44c5-a6ad-b4bb3452f79c_wxs_gdc_realn.bam 35716585239 BAM harmonized CPTAC3 5efb9f9b-8b67-4185-90af-3b6742fe3a23 21697c519449b516686e49c030c0c5ab {"aliquot_tag": "ALQ_8e47fe77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02163.WXS.T C3L-02163 LSCC WXS tumor CPT0175120006 CPT0175120006.WholeExome.RP-1303.bam 25384718570 BAM submitted_aligned CPTAC3 9eaf325a-015a-419a-8a4f-6de3e28998ed c0329d91b1cb14de2444210517b8996f {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02163.WXS.T.hg38 C3L-02163 LSCC WXS tumor CPT0175120006 c3fcf397-78d9-40cb-a915-24bbc9a5cb59_wxs_gdc_realn.bam 34722563570 BAM harmonized CPTAC3 de5f9de8-a1b2-4d7a-bb21-e568208241e9 aaa7ca34d2fc4c9110fe99c9557122f9 {"aliquot_tag": "ALQ_fbe48c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.MethArray.Green.A C3L-02164 LSCC Methylation_Array tissue_normal CPT0175270006 203219640172_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6d51002e-43d8-4dd2-9887-86afc4f58134 541840253d5d7c4c3a262d4b632db176 {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.MethArray.Green.T C3L-02164 LSCC Methylation_Array tumor CPT0175260006 203219670217_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9060a6ee-7f05-465d-a053-f7dfdd3f2e87 d21f5d31c5d00be89107ef5bc10b2f5c {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.MethArray.Red.A C3L-02164 LSCC Methylation_Array tissue_normal CPT0175270006 203219640172_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 c63110ba-4715-4f15-9488-e302bef4d969 4ad923784218e40fdb87456688cca37c {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.MethArray.Red.T C3L-02164 LSCC Methylation_Array tumor CPT0175260006 203219670217_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 d70e33b6-cad8-4194-9cc3-1f7acb37ce64 c7b990a53de83d7048880955b3713ed3 {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.miRNA-Seq.A.hg38 C3L-02164 LSCC miRNA-Seq tissue_normal CPT0175270009 082ac958-2fbf-427a-aefe-04890001a0f3_mirnaseq_gdc_realn.bam 230223191 BAM harmonized CPTAC3 b813ea57-75a9-4a5c-8272-969b0d2b8b87 f9fd43611742f91ee7930d7cedff667a {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.miRNA-Seq.S15_L003_R1.T C3L-02164 LSCC miRNA-Seq tumor CPT0175260013 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGTCA_S15_L003_R1_001.unaln.bam 248543332 BAM S15_L003_R1 submitted_unaligned CPTAC3 fc40d81a-825e-423d-bbf6-9bb673ef3462 c6c274ba171cd4af05759475360842dd {"aliquot_tag": "ALQ_15db5960", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.miRNA-Seq.S3_L003_R1.A C3L-02164 LSCC miRNA-Seq tissue_normal CPT0175270009 181219_UNC31-K00269_0173_BHYGJJBBXX_TTAGGC_S3_L003_R1_001.unaln.bam 209613370 BAM S3_L003_R1 submitted_unaligned CPTAC3 dbb9cd17-4aab-4628-b7af-48370ccb095d ccd752c8235ddeea5b44463fb3d52ad6 {"aliquot_tag": "ALQ_d175a88f", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.miRNA-Seq.T.hg38 C3L-02164 LSCC miRNA-Seq tumor CPT0175260013 d357793b-6382-4880-822a-2b87596cdde2_mirnaseq_gdc_realn.bam 271331585 BAM harmonized CPTAC3 adb38205-caa8-40f5-9d76-3773ad2f8ba0 1309d14d413b8df26d87218254b0608a {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.RNA-Seq.chimeric.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.chimeric.gdc_realn.bam 132940541 BAM chimeric harmonized CPTAC3 c2f3a0df-3293-4da8-ac4c-c27f62c79cc3 ec06fd26e2fa111edc207ec3349fc1a9 {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.RNA-Seq.chimeric.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.chimeric.gdc_realn.bam 178709267 BAM chimeric harmonized CPTAC3 623980c6-df8d-4e77-afbd-e3360b35f808 fe155a2590fd3e55a12613f041edaad4 {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.RNA-Seq.genomic.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.genomic.gdc_realn.bam 7574148616 BAM genomic harmonized CPTAC3 96b0a63c-4d5d-4f80-8612-0686e6afc185 7af90bdd78ec70a2bb835116f4119adb {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.RNA-Seq.genomic.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.genomic.gdc_realn.bam 7431342183 BAM genomic harmonized CPTAC3 d76210d6-f8f4-4892-b40e-1cb794c6166f 8a3962f16e9251a3af4372728b62003d {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.RNA-Seq.S23_L005_R1.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R1_001.fastq.gz 3310741921 FASTQ S23_L005_R1 submitted_unaligned CPTAC3 d9804fb9-2750-416d-b1b0-01c6f143de0b a709da5a4d8148fd139322f8674e47bf {"aliquot_tag": "ALQ_15db5960", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.RNA-Seq.S23_L005_R2.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R2_001.fastq.gz 3506868826 FASTQ S23_L005_R2 submitted_unaligned CPTAC3 0a0c4652-bdde-4f97-af4b-6b86e2484a39 ee74d83578e699e0034de85a7408276d {"aliquot_tag": "ALQ_15db5960", "sample": "S23", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.RNA-Seq.S3_L001_R1.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R1_001.fastq.gz 3293880473 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5a20c427-b058-4d28-9b84-51370059f471 b62960e573bf7858bf3a9fe76fdb47f2 {"aliquot_tag": "ALQ_d175a88f", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.RNA-Seq.S3_L001_R2.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R2_001.fastq.gz 3661444261 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 0cc189c1-37d3-48bd-8efc-e679aecfcc1e e424c3f3a7ca72fee4b43118ba12b6f7 {"aliquot_tag": "ALQ_d175a88f", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.RNA-Seq.transcriptome.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.transcriptome.gdc_realn.bam 9162308031 BAM transcriptome harmonized CPTAC3 9d0bc382-57d1-41cf-98c2-8730b58e04bb a87ef2df607aeefdca46011bc5278331 {"aliquot_tag": "ALQ_d175a88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.RNA-Seq.transcriptome.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.transcriptome.gdc_realn.bam 9068183320 BAM transcriptome harmonized CPTAC3 e95f9400-8196-48f9-95f6-11880f50b947 e8f7e2afde61162b3c610371dd9958d1 {"aliquot_tag": "ALQ_15db5960", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.WGS.A C3L-02164 LSCC WGS tissue_normal CPT0175270006 CPT0175270006.WholeGenome.RP-1303.bam 62155856068 BAM submitted_aligned CPTAC3 a74ab8df-51cb-4b7f-84b7-50115a6ee025 d2344c9e90038afdba7431635cd9114c {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.WGS.A.hg38 C3L-02164 LSCC WGS tissue_normal CPT0175270006 29e16a89-1177-45a2-884e-363151aee3c8_wgs_gdc_realn.bam 88533764628 BAM harmonized CPTAC3 6b40e8eb-68d8-4d0d-9cd2-928fb30b8c60 ace2d53c5ec25d9266e1c94fe2bc1a35 {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.WGS.N C3L-02164 LSCC WGS blood_normal CPT0175340002 CPT0175340002.WholeGenome.RP-1303.bam 57807968927 BAM submitted_aligned CPTAC3 1a64798d-ab90-479d-b2e5-8824e8da8ed3 508f4df73c3a6cfc913a27f240180554 {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02164.WGS.N.hg38 C3L-02164 LSCC WGS blood_normal CPT0175340002 cb3de721-41d7-4780-a377-47238d576458_wgs_gdc_realn.bam 82549938680 BAM harmonized CPTAC3 f6d387d3-30cb-496b-a274-50d628d3124d 750dcc0b57f0303c8a493f9a3029746c {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02164.WGS.T C3L-02164 LSCC WGS tumor CPT0175260006 CPT0175260006.WholeGenome.RP-1303.bam 53588197415 BAM submitted_aligned CPTAC3 28084428-2e78-481a-aa4e-273c9a4158fb 5c0a82e0ebc1322ddb6a7615f3d2a3ff {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.WGS.T.hg38 C3L-02164 LSCC WGS tumor CPT0175260006 692c864f-e57b-478b-ade7-7e8ef994bac6_wgs_gdc_realn.bam 76362366393 BAM harmonized CPTAC3 b632788a-df3c-4270-b919-502faaf732b1 3c6c75b7b46e8b1dd121a35bfc14282b {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.WXS.A C3L-02164 LSCC WXS tissue_normal CPT0175270006 CPT0175270006.WholeExome.RP-1303.bam 21133571894 BAM submitted_aligned CPTAC3 a286dc13-5396-490b-9ad5-885e06b05450 2e3e8ff74f78b83dd37d5f7bc5a3fa9c {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.WXS.A.hg38 C3L-02164 LSCC WXS tissue_normal CPT0175270006 29e16a89-1177-45a2-884e-363151aee3c8_wxs_gdc_realn.bam 29283607750 BAM harmonized CPTAC3 70fb0d1d-2c6d-4322-99bf-547523d24c4f c33ca8eb68109cee6a2844c5e70d9898 {"aliquot_tag": "ALQ_41cab51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02164.WXS.N C3L-02164 LSCC WXS blood_normal CPT0175340002 CPT0175340002.WholeExome.RP-1303.bam 27331911113 BAM submitted_aligned CPTAC3 6bb1cca5-88f5-4c0b-957f-f1a8f5e6643d 85b68774cf61e045a4b0af0fabc54abe {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02164.WXS.N.hg38 C3L-02164 LSCC WXS blood_normal CPT0175340002 cb3de721-41d7-4780-a377-47238d576458_wxs_gdc_realn.bam 37432081911 BAM harmonized CPTAC3 2619f144-48ba-440e-9317-d91207766303 fb3ce43ace2ea9fb81df5e2050e38820 {"aliquot_tag": "ALQ_ca5bd872", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02164.WXS.T C3L-02164 LSCC WXS tumor CPT0175260006 CPT0175260006.WholeExome.RP-1303.bam 26037754924 BAM submitted_aligned CPTAC3 4da305b8-e127-4983-a169-984f1e30ab9e bd567d952ba799c8711827630050c634 {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02164.WXS.T.hg38 C3L-02164 LSCC WXS tumor CPT0175260006 692c864f-e57b-478b-ade7-7e8ef994bac6_wxs_gdc_realn.bam 35554493969 BAM harmonized CPTAC3 cae3426d-a2fb-46ba-852a-73364bf7f28d 0c0d972769d9ef53962ea92f6572a28d {"aliquot_tag": "ALQ_7caa9cae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.MethArray.Green.A C3L-02165 LUAD Methylation_Array tissue_normal CPT0129940006 203219650004_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 b505d376-4f4c-4cae-bf57-e3bd03be6d21 c6dfdce1a90300bbd816eb003cb555c5 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.MethArray.Green.T C3L-02165 LUAD Methylation_Array tumor CPT0129910006 203219650003_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 3b558751-c78b-4745-b9a8-963475ec79d0 40a2dbc19a7c7e42443b5236515f8699 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.MethArray.Red.A C3L-02165 LUAD Methylation_Array tissue_normal CPT0129940006 203219650004_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 5b378a98-fc0b-4cec-b2ee-76a74a0bb5df 107693109d015aede3534cb090a3825b {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.MethArray.Red.T C3L-02165 LUAD Methylation_Array tumor CPT0129910006 203219650003_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 d641dc24-e201-4c79-8a76-70d9c4d3ac8b 26ca7bb039afc6d9add34b961f8d3ea5 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.miRNA-Seq.A.hg38 C3L-02165 LUAD miRNA-Seq tissue_normal CPT0129940009 30b02e0d-b1f9-4419-a153-3e9087a82090_mirnaseq_gdc_realn.bam 199642953 BAM harmonized CPTAC3 14a6447b-6a33-4713-8220-00a360b13acc 1c0f6174eb105684658cca032086532b {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.miRNA-Seq.S14_L004_R1.A C3L-02165 LUAD miRNA-Seq tissue_normal CPT0129940009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L004_R1_001.unaln.bam 178527203 BAM S14_L004_R1 submitted_unaligned CPTAC3 aa52b826-be12-47c9-9745-8daac710a462 176dce3f1787ddac63674a7b4dbad0d0 {"aliquot_tag": "ALQ_7352468c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.miRNA-Seq.S19_L006_R1.T C3L-02165 LUAD miRNA-Seq tumor CPT0129910009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L006_R1_001.unaln.bam 174157669 BAM S19_L006_R1 submitted_unaligned CPTAC3 6c23d7f0-b677-4bda-9fa3-7909475e8d4f cab94c6fdc35f1bc1e0e78b5edb824be {"aliquot_tag": "ALQ_bbb2c9fc", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.miRNA-Seq.T.hg38 C3L-02165 LUAD miRNA-Seq tumor CPT0129910009 9c3f3ec6-c919-45e6-bc16-7c4387bdf0ff_mirnaseq_gdc_realn.bam 191509412 BAM harmonized CPTAC3 805a564e-ef66-4cf3-b656-94611e681817 08879db9bcc422b92d6be12c0fc90b67 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.RNA-Seq.chimeric.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.chimeric.gdc_realn.bam 33366406 BAM chimeric harmonized CPTAC3 4573db0d-2895-471b-be98-b330979d2e0a a37ca9ee7e118cdc8c0dd105e35ed9f9 {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.RNA-Seq.chimeric.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.chimeric.gdc_realn.bam 33810634 BAM chimeric harmonized CPTAC3 9c96e594-c986-4596-9066-0199ed3e6670 2395e476591588fe185a10fb98a6aa36 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.RNA-Seq.genomic.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.genomic.gdc_realn.bam 7646602407 BAM genomic harmonized CPTAC3 c92d10fa-dd65-4a06-9e71-940991cc1d8d 02bafa17632bfc2126220c1cde20cc2d {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.RNA-Seq.genomic.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.genomic.gdc_realn.bam 8932270188 BAM genomic harmonized CPTAC3 3cea45ec-98a7-4451-88b8-95a467af9cf5 c2f7d9da664caa8c43e292a04162f663 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.RNA-Seq.S19_L005_R1.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R1_001.fastq.gz 3947914233 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 8857b412-d9ef-4375-b15d-7700b63e8f4c 5527505aa9f6c5d8e6bbfe0fb535e123 {"aliquot_tag": "ALQ_bbb2c9fc", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.RNA-Seq.S19_L005_R2.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R2_001.fastq.gz 4055843633 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 e99cae96-be04-4b4f-b22a-0a2691cf4fc5 10cb3fb1d26223b9ed1198c6d8d01fa3 {"aliquot_tag": "ALQ_bbb2c9fc", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.RNA-Seq.S5_L002_R1.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3522872141 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 6ffc1beb-76ec-4351-a24a-e6f6f0e29245 8d979c64d1092ae09dc7205c6b5869dd {"aliquot_tag": "ALQ_7352468c", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.RNA-Seq.S5_L002_R2.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3714726213 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 6152441d-aa4d-4192-a405-87efbadfd169 d9a30b01f6bcd1aa2f55de1301f0304d {"aliquot_tag": "ALQ_7352468c", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.RNA-Seq.transcriptome.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.transcriptome.gdc_realn.bam 10537743869 BAM transcriptome harmonized CPTAC3 11d96ff4-c466-4151-9123-dfe92ae3dda4 16b1a59ea0ea701b70f73b454ebe2dd1 {"aliquot_tag": "ALQ_7352468c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.RNA-Seq.transcriptome.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.transcriptome.gdc_realn.bam 9615734135 BAM transcriptome harmonized CPTAC3 106224cf-fffb-4bbe-8fc9-e0642091e8a5 97c4950a7c744dd84de9f3caced250b4 {"aliquot_tag": "ALQ_bbb2c9fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.WGS.A C3L-02165 LUAD WGS tissue_normal CPT0129940006 CPT0129940006.WholeGenome.RP-1303.bam 59487889443 BAM submitted_aligned CPTAC3 398840b5-e9ef-40de-87ee-837549618893 4617728254055fc423315df48ed5a91c {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.WGS.A.hg38 C3L-02165 LUAD WGS tissue_normal CPT0129940006 ba1cc750-8ff6-46bf-ae81-ce29d02f518f_wgs_gdc_realn.bam 86663973046 BAM harmonized CPTAC3 8add41f7-6199-4743-b699-2d1ae230455d 123f607c8a858bbbd1d975f29c1f6a76 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.WGS.N C3L-02165 LUAD WGS blood_normal CPT0130010002 CPT0130010002.WholeGenome.RP-1303.bam 54608956474 BAM submitted_aligned CPTAC3 d5eaadc8-cd10-476d-abf7-78b4e45d16ae 352809af870f26820f9e757ee817cc69 {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02165.WGS.N.hg38 C3L-02165 LUAD WGS blood_normal CPT0130010002 c34832b9-9c05-4ac5-a581-a59d59d2e8bb_wgs_gdc_realn.bam 80361785822 BAM harmonized CPTAC3 fbea6bd0-b205-4088-a344-62d7656b9bf1 a19c6c67e8f75fbb02ed775a650ee4ad {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02165.WGS.T C3L-02165 LUAD WGS tumor CPT0129910006 CPT0129910006.WholeGenome.RP-1303.bam 52115223295 BAM submitted_aligned CPTAC3 91087056-bc6b-425c-85af-6dab946f5c48 79dabc22f527da6e9874bbfa7c6cc96d {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.WGS.T.hg38 C3L-02165 LUAD WGS tumor CPT0129910006 de799385-c88e-4f46-a502-b0c4d6b0a6a9_wgs_gdc_realn.bam 76096623254 BAM harmonized CPTAC3 b0a4bb47-d668-414e-832f-baaa4a0297e4 bd1006d2e7fc87296091c3d289342966 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.WXS.A C3L-02165 LUAD WXS tissue_normal CPT0129940006 CPT0129940006.WholeExome.RP-1303.bam 26930660899 BAM submitted_aligned CPTAC3 74417c66-6972-4ea5-8bf5-07b5448c9060 27245c70c7a1234ebee4fa298f61b595 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.WXS.A.hg38 C3L-02165 LUAD WXS tissue_normal CPT0129940006 ba1cc750-8ff6-46bf-ae81-ce29d02f518f_wxs_gdc_realn.bam 36413909677 BAM harmonized CPTAC3 fe289a7d-799c-4201-8c8e-95ad18e90fd0 e14327587265925a6ea138444e33ab43 {"aliquot_tag": "ALQ_e3ed5b1d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02165.WXS.N C3L-02165 LUAD WXS blood_normal CPT0130010002 CPT0130010002.WholeExome.RP-1303.bam 33460939232 BAM submitted_aligned CPTAC3 5461310d-d5ee-49e7-9283-448111b8f5f7 783480c96b2967e2f3037bbc00cdc3bd {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02165.WXS.N.hg38 C3L-02165 LUAD WXS blood_normal CPT0130010002 c34832b9-9c05-4ac5-a581-a59d59d2e8bb_wxs_gdc_realn.bam 46700593099 BAM harmonized CPTAC3 c0bac254-c578-433f-866b-45c5cadb3b81 dcac9970421637c5267c7862458836f2 {"aliquot_tag": "ALQ_525d04f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02165.WXS.T C3L-02165 LUAD WXS tumor CPT0129910006 CPT0129910006.WholeExome.RP-1303.bam 18339853372 BAM submitted_aligned CPTAC3 77d5f08c-cbcd-49f8-a2c0-0b4503088b1c 96aaf3900462656119a3f01781e0d394 {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02165.WXS.T.hg38 C3L-02165 LUAD WXS tumor CPT0129910006 de799385-c88e-4f46-a502-b0c4d6b0a6a9_wxs_gdc_realn.bam 25451318152 BAM harmonized CPTAC3 8120f159-e48c-4db7-9993-aaaf42cfbd70 5b14ef01ff0909dfe8d29f490c92260e {"aliquot_tag": "ALQ_2b0dd46d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.MethArray.Green.A C3L-02168 LSCC Methylation_Array tissue_normal CPT0175410006 203220070082_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b9d75ffe-1a54-4ac2-8303-ef0308e2e657 6035bf6e445b6ccbb480d025c66acf8a {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.MethArray.Green.T C3L-02168 LSCC Methylation_Array tumor CPT0175390006 203219760065_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b2b0c4c-5665-48d8-a868-d4def29b30a4 23d403f9c671cd2b9738a1bd98df8b66 {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.MethArray.Red.A C3L-02168 LSCC Methylation_Array tissue_normal CPT0175410006 203220070082_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 9ef277be-d61e-4972-8f84-2db3489dfe0e 364207a1a7763b13382f6b252486dcd1 {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.MethArray.Red.T C3L-02168 LSCC Methylation_Array tumor CPT0175390006 203219760065_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 9c387d13-3ed0-4515-b984-544a4910b4c8 5630be29be0158b4423ee6e8b5cd73af {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.miRNA-Seq.A.hg38 C3L-02168 LSCC miRNA-Seq tissue_normal CPT0175410009 6f5bcb38-412c-45d0-b669-dac7e38dca33_mirnaseq_gdc_realn.bam 357566620 BAM harmonized CPTAC3 e4844eea-1a1f-4e0b-a355-377cc2c08068 8d6dc235cfa68287715c5aeac23822c7 {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.miRNA-Seq.S22_L001_R1.A C3L-02168 LSCC miRNA-Seq tissue_normal CPT0175410009 181219_UNC31-K00269_0173_BHYGJJBBXX_GAGTGG_S22_L001_R1_001.unaln.bam 321047686 BAM S22_L001_R1 submitted_unaligned CPTAC3 7738d701-b654-40f2-832f-b5953413ef75 f52230acc42eb04225bcfc29d29873fe {"aliquot_tag": "ALQ_886cbe32", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.miRNA-Seq.S46_L002_R1.T C3L-02168 LSCC miRNA-Seq tumor CPT0175390009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGAAG_S46_L002_R1_001.unaln.bam 217926140 BAM S46_L002_R1 submitted_unaligned CPTAC3 8b603844-5fd0-460e-8eb6-15b6501ce0b3 b44cb224460e234d5865944c8564f1a5 {"aliquot_tag": "ALQ_a519c54b", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.miRNA-Seq.T.hg38 C3L-02168 LSCC miRNA-Seq tumor CPT0175390009 45b5f7a8-e4f8-402a-aa60-af007a178911_mirnaseq_gdc_realn.bam 245275324 BAM harmonized CPTAC3 0d96bbe2-66c2-4713-a6f7-22389653e7d7 ca6c661939578839bc3a7ee80d29d240 {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.RNA-Seq.chimeric.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.chimeric.gdc_realn.bam 34315856 BAM chimeric harmonized CPTAC3 6831c6ea-d6ba-4105-a7e1-529cb7c80989 1426225f7f745f30c35908c23b0216a0 {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.RNA-Seq.chimeric.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.chimeric.gdc_realn.bam 30954593 BAM chimeric harmonized CPTAC3 7fe9eb44-8a60-4d6c-8cc6-fe21f6c0c60d c94be8adb5892a548f67dd540c4ee29b {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.RNA-Seq.genomic.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.genomic.gdc_realn.bam 9241772687 BAM genomic harmonized CPTAC3 20031b39-aacf-4dec-b610-09238b907877 e498e71d6a4e1c4a0ff2eecd2c5c20af {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.RNA-Seq.genomic.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.genomic.gdc_realn.bam 8935052837 BAM genomic harmonized CPTAC3 110298b8-ece4-4a62-aee1-42db054163c2 0a7badb0b3e56d8261c84177e350db4b {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.RNA-Seq.S8_L002_R1.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4475051354 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 2fc3a64e-f1ec-4d8c-a37e-f0e9b9c72dad 47c7f3cccf8accbb21dd1f079fcbe0d4 {"aliquot_tag": "ALQ_886cbe32", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.RNA-Seq.S8_L002_R2.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4776309378 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 8e8bbb4b-680a-4b55-96f5-9d29a667fce9 28484f010c0161a2b7df9611df4aa1ae {"aliquot_tag": "ALQ_886cbe32", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.RNA-Seq.S8_L008_R1.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4109780635 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 a1ba4506-e692-4cab-ad3c-35743423bd0f 4b01a8a7eac87e8412656b9b87455c1c {"aliquot_tag": "ALQ_a519c54b", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.RNA-Seq.S8_L008_R2.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4242617728 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 0c6c6156-47e4-4738-9203-195cb585064c 94eb53844c6639aa23d72d7428773450 {"aliquot_tag": "ALQ_a519c54b", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.RNA-Seq.transcriptome.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.transcriptome.gdc_realn.bam 11790388632 BAM transcriptome harmonized CPTAC3 0dbd5545-6be1-4ea8-b075-ae56c44f546a 949fb45fbf3362ba3beffde71569a230 {"aliquot_tag": "ALQ_886cbe32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.RNA-Seq.transcriptome.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.transcriptome.gdc_realn.bam 11019878459 BAM transcriptome harmonized CPTAC3 2b716955-2d9e-44fa-a3cc-5aa3c44d286d 4a025239fb9515024f3d2f7e8cad813a {"aliquot_tag": "ALQ_a519c54b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.WGS.A C3L-02168 LSCC WGS tissue_normal CPT0175410006 CPT0175410006.WholeGenome.RP-1303.bam 56370341457 BAM submitted_aligned CPTAC3 6c105c2e-6647-48d7-8504-e44654c47a93 19d947dc61e4c938062c227de0729e89 {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.WGS.A.hg38 C3L-02168 LSCC WGS tissue_normal CPT0175410006 c15d8e6d-02f7-4ae3-9fd8-23cb0665ec92_wgs_gdc_realn.bam 82552509795 BAM harmonized CPTAC3 66f7cc00-1b8b-43db-88dd-3c349bd45f75 c9f0d56bc4b08fcba86627cccad42cd6 {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.WGS.N C3L-02168 LSCC WGS blood_normal CPT0175480002 CPT0175480002.WholeGenome.RP-1303.bam 61292219952 BAM submitted_aligned CPTAC3 d7893b89-4d0c-49ec-b932-09eeab283e72 217a957f4dc290112099f43607b20ddf {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02168.WGS.N.hg38 C3L-02168 LSCC WGS blood_normal CPT0175480002 0ccfe2e3-b8d8-46f7-9330-adeb25be08e0_wgs_gdc_realn.bam 89124593493 BAM harmonized CPTAC3 5266fb4a-b4bf-4025-bb28-82fdd77837e0 902d2327b310fcaadad55492fa6aee7d {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02168.WGS.T C3L-02168 LSCC WGS tumor CPT0175390006 CPT0175390006.WholeGenome.RP-1303.bam 66080737100 BAM submitted_aligned CPTAC3 ae6ef28b-f9ea-40ea-87eb-62a2e97fb910 ad8af31d0fe2648640b4c069795ab3c2 {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.WGS.T.hg38 C3L-02168 LSCC WGS tumor CPT0175390006 4a02531c-43ca-4755-b48a-f9732230695f_wgs_gdc_realn.bam 95264569703 BAM harmonized CPTAC3 d4e214d0-f287-4325-85b0-d467b42d6045 b0c419d7f5a23761c87d8b2f39da4e0e {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.WXS.A C3L-02168 LSCC WXS tissue_normal CPT0175410006 CPT0175410006.WholeExome.RP-1303.bam 23814179617 BAM submitted_aligned CPTAC3 dd8adeb7-2774-4373-8514-4b14a0060440 75abe853f4ad2215094a862c7a549f0a {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.WXS.A.hg38 C3L-02168 LSCC WXS tissue_normal CPT0175410006 c15d8e6d-02f7-4ae3-9fd8-23cb0665ec92_wxs_gdc_realn.bam 32912622572 BAM harmonized CPTAC3 e764231c-a50d-4fc0-89e9-83db439940a0 d0ca21dd1a1f0e4913400235bc2bf60b {"aliquot_tag": "ALQ_18d3a3a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02168.WXS.N C3L-02168 LSCC WXS blood_normal CPT0175480002 CPT0175480002.WholeExome.RP-1303.bam 34760199877 BAM submitted_aligned CPTAC3 1aecc33b-0ff3-422c-aa28-f137690b5d52 ddd31280310771cd0bc1caa495753ab9 {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02168.WXS.N.hg38 C3L-02168 LSCC WXS blood_normal CPT0175480002 0ccfe2e3-b8d8-46f7-9330-adeb25be08e0_wxs_gdc_realn.bam 47387802631 BAM harmonized CPTAC3 c47e4f68-1b43-479c-af27-f585fb5347f3 28bbaa3972658dbdea03d32606098763 {"aliquot_tag": "ALQ_12ae05cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02168.WXS.T C3L-02168 LSCC WXS tumor CPT0175390006 CPT0175390006.WholeExome.RP-1303.bam 33095901242 BAM submitted_aligned CPTAC3 b1836aca-9602-49d9-949b-bae06062be16 b3b6497fdaa7461ac96149699573c452 {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02168.WXS.T.hg38 C3L-02168 LSCC WXS tumor CPT0175390006 4a02531c-43ca-4755-b48a-f9732230695f_wxs_gdc_realn.bam 46704831083 BAM harmonized CPTAC3 9643871e-6530-4d1e-920e-530f826ebdaf 46ce1796f888b42cd6393bd2cc273dad {"aliquot_tag": "ALQ_35a6d8da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.MethArray.Green.A C3L-02169 LUAD Methylation_Array tissue_normal CPT0175710006 203219650176_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 61e40b56-e94e-4e16-bd04-c913555ba1d7 652a2ec702533fa1faa32b675b3d56b5 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.MethArray.Green.T C3L-02169 LUAD Methylation_Array tumor CPT0175660006 203219670118_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9cbb618c-2c7a-4796-b232-6f65521421e3 644df2f1431b44dc353d82465a538fa7 {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.MethArray.Red.A C3L-02169 LUAD Methylation_Array tissue_normal CPT0175710006 203219650176_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 6f9ed8ef-da73-4e1d-8814-dc942f97a56a 6c8ded30b5d29a1e3a92c4ec75cdb1f8 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.MethArray.Red.T C3L-02169 LUAD Methylation_Array tumor CPT0175660006 203219670118_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 9740eede-b7e6-4aa6-89f3-524bddef04ba f7c79eb329cdf130f03155953ce059eb {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.miRNA-Seq.A.hg38 C3L-02169 LUAD miRNA-Seq tissue_normal CPT0175710009 63054a39-2f87-4083-8b2f-c83604062cf1_mirnaseq_gdc_realn.bam 292412084 BAM harmonized CPTAC3 356ed667-cc07-4e59-83d1-44c8c51500d6 f832bf5e582d5edf925f38fc86083366 {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.miRNA-Seq.S11_L008_R1.A C3L-02169 LUAD miRNA-Seq tissue_normal CPT0175710009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L008_R1_001.unaln.bam 267880462 BAM S11_L008_R1 submitted_unaligned CPTAC3 278c6ef4-0cce-4c36-91f1-e362019901d5 6ae4b9ab8c4c6f0500eabf39358a9b23 {"aliquot_tag": "ALQ_ef8cc9c", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.miRNA-Seq.S20_L006_R1.T C3L-02169 LUAD miRNA-Seq tumor CPT0175660009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L006_R1_001.unaln.bam 172889673 BAM S20_L006_R1 submitted_unaligned CPTAC3 aa2df2e4-ef1d-4120-8d60-a4eb2bed9a2b 5d6c6a3a7e708fdadf1510cfe2516ae1 {"aliquot_tag": "ALQ_7784c329", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.miRNA-Seq.T.hg38 C3L-02169 LUAD miRNA-Seq tumor CPT0175660009 e1fe640d-55b6-4bcd-86c2-50d232fe0726_mirnaseq_gdc_realn.bam 189579694 BAM harmonized CPTAC3 6fa879b3-b6a9-4e7c-820c-52f165879198 e2d599e0d14527496e65c56b89d65016 {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.RNA-Seq.chimeric.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.chimeric.gdc_realn.bam 404685344 BAM chimeric harmonized CPTAC3 076fbae6-62de-4ac8-8852-5e54217a1136 321c2ea859a7aeba9d36f14c5d12c3cb {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.RNA-Seq.chimeric.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.chimeric.gdc_realn.bam 45352652 BAM chimeric harmonized CPTAC3 510cd053-d87f-4791-9342-41161cf2e8d7 afe8e7bec58f53422f50e98419fe261e {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.RNA-Seq.genomic.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.genomic.gdc_realn.bam 7045813099 BAM genomic harmonized CPTAC3 fd5e68c3-75e7-470d-ae91-8bd39d9955a2 5c9a03a40248af9af90830c6b222ddb3 {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.RNA-Seq.genomic.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.genomic.gdc_realn.bam 8822263905 BAM genomic harmonized CPTAC3 e99cd478-29bb-4568-a354-fa59c65803c0 6b0613314c44bf2d2dd340b6092a9b12 {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.RNA-Seq.S2_L004_R1.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R1_001.fastq.gz 3137684503 FASTQ S2_L004_R1 submitted_unaligned CPTAC3 3a6178ab-bb41-49a3-a5dd-0a91c49505e2 d9a8ddd0b95c2e5af2f82c541016db19 {"aliquot_tag": "ALQ_ef8cc9c", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.RNA-Seq.S2_L004_R2.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R2_001.fastq.gz 3376200871 FASTQ S2_L004_R2 submitted_unaligned CPTAC3 4eecf64a-efc8-4396-a9e3-32f444812f64 9cacbad6323ea7a4a2750aec50fadff6 {"aliquot_tag": "ALQ_ef8cc9c", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.RNA-Seq.S5_L004_R1.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R1_001.fastq.gz 3904697322 FASTQ S5_L004_R1 submitted_unaligned CPTAC3 db7050c8-7eb4-4739-a7d6-9b941c0b0425 40366141b7ea3a541df3d6706a572869 {"aliquot_tag": "ALQ_7784c329", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.RNA-Seq.S5_L004_R2.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R2_001.fastq.gz 4385390689 FASTQ S5_L004_R2 submitted_unaligned CPTAC3 faeae4e9-d05d-46ab-882a-e98f2771e6ed 9b1e24df10d401d81507e16adb00a414 {"aliquot_tag": "ALQ_7784c329", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.RNA-Seq.transcriptome.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.transcriptome.gdc_realn.bam 8044393588 BAM transcriptome harmonized CPTAC3 0a5f8ff1-a4bc-4b50-89e6-b6cb0ed21a6b 2b1fe4e5545f21f25ad040521192da28 {"aliquot_tag": "ALQ_ef8cc9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.RNA-Seq.transcriptome.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.transcriptome.gdc_realn.bam 10591413909 BAM transcriptome harmonized CPTAC3 e1e71222-c787-4fbe-a15b-be7d1216702b b33c5495ca4018215fe14ea7aad256e9 {"aliquot_tag": "ALQ_7784c329", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.WGS.A C3L-02169 LUAD WGS tissue_normal CPT0175710006 CPT0175710006.WholeGenome.RP-1303.bam 53372945797 BAM submitted_aligned CPTAC3 1477b884-c901-4002-b3ff-1514909d782b 8e197e06a7cef97f57c4f77a78a12b0f {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.WGS.A.hg38 C3L-02169 LUAD WGS tissue_normal CPT0175710006 6dbeeb29-7bd3-4a25-b571-8e60b4655ceb_wgs_gdc_realn.bam 77303064830 BAM harmonized CPTAC3 d30c8364-c3e4-4b6a-bb15-fc82540939f3 49251dddb6773fb8c1efba4c0a295853 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.WGS.N C3L-02169 LUAD WGS blood_normal CPT0175780002 CPT0175780002.WholeGenome.RP-1303.bam 64451145950 BAM submitted_aligned CPTAC3 cd56bc76-d3d9-499a-8e2d-2d19089db42a 39509e72e8f08b780f912305ee28d532 {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02169.WGS.N.hg38 C3L-02169 LUAD WGS blood_normal CPT0175780002 650a2f0e-c2b7-49d8-a61a-d6b420f000e2_wgs_gdc_realn.bam 93854024125 BAM harmonized CPTAC3 812b96aa-6bd9-4105-b8cc-4101ea562e38 165f088cb00493ad6d1b4751b363f9bd {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02169.WGS.T C3L-02169 LUAD WGS tumor CPT0175660006 CPT0175660006.WholeGenome.RP-1303.bam 52183643117 BAM submitted_aligned CPTAC3 5a45e392-04b8-4d27-bfaa-7267dc2b0fef 70dd18a483c84eb009d811c95e04d80e {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.WGS.T.hg38 C3L-02169 LUAD WGS tumor CPT0175660006 12a95ce5-d1e9-4029-8e73-ac1eb765082f_wgs_gdc_realn.bam 74682366099 BAM harmonized CPTAC3 ae53d7d1-50f5-4350-9979-332e2e55fccb ac3cca2d829f152f826149191c5ceafc {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.WXS.A C3L-02169 LUAD WXS tissue_normal CPT0175710006 CPT0175710006.WholeExome.RP-1303.bam 25751415666 BAM submitted_aligned CPTAC3 4783da09-40a8-4bab-aecf-015dd1cd3bce 366b21cb4d1a674dc9ff7d40a5dc45c6 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.WXS.A.hg38 C3L-02169 LUAD WXS tissue_normal CPT0175710006 6dbeeb29-7bd3-4a25-b571-8e60b4655ceb_wxs_gdc_realn.bam 36469932533 BAM harmonized CPTAC3 95ce1d8a-444b-4e9c-8b57-f6906f4704ca c4c978db240960b758630f3ee87b4f74 {"aliquot_tag": "ALQ_9e47d10d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02169.WXS.N C3L-02169 LUAD WXS blood_normal CPT0175780002 CPT0175780002.WholeExome.RP-1303.bam 21808367417 BAM submitted_aligned CPTAC3 b09bbe95-561f-4b00-a7d8-43332247d5ef 49c01869f621f4ee7a7e14eb9affde33 {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02169.WXS.N.hg38 C3L-02169 LUAD WXS blood_normal CPT0175780002 650a2f0e-c2b7-49d8-a61a-d6b420f000e2_wxs_gdc_realn.bam 30295540866 BAM harmonized CPTAC3 56701f8e-cbcb-4670-909d-0550fe95986a 76c4b63b06e1a5632890cf5bc09c63fe {"aliquot_tag": "ALQ_943a7765", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02169.WXS.T C3L-02169 LUAD WXS tumor CPT0175660006 CPT0175660006.WholeExome.RP-1303.bam 25137406545 BAM submitted_aligned CPTAC3 52833b07-2205-42f8-8169-0d504fea518b da50cc0bda10ae03386d1e855ff88f45 {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02169.WXS.T.hg38 C3L-02169 LUAD WXS tumor CPT0175660006 12a95ce5-d1e9-4029-8e73-ac1eb765082f_wxs_gdc_realn.bam 35273434511 BAM harmonized CPTAC3 de1ccc9d-ab42-4c82-b1a7-918cf2cc21a1 979d23f04a1685a154055eb8f6e6f1fa {"aliquot_tag": "ALQ_e73bdeb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.MethArray.Green.T C3L-02170 LSCC Methylation_Array tumor CPT0175560006 203219670180_R06C01_Grn.idat 13676242 IDAT Green NA CPTAC3 1962f4b9-2bef-46b8-8eb5-50c0b3e76b05 b91edb42cfcee267abb64064fbbb12bb {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.MethArray.Red.T C3L-02170 LSCC Methylation_Array tumor CPT0175560006 203219670180_R06C01_Red.idat 13676242 IDAT Red NA CPTAC3 e1bacb06-3333-450e-9acc-5720143327bc 90586d4a3b0d68adc6bc2eb6ead0a25d {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.miRNA-Seq.S47_L002_R1.T C3L-02170 LSCC miRNA-Seq tumor CPT0175560009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGGCA_S47_L002_R1_001.unaln.bam 225890635 BAM S47_L002_R1 submitted_unaligned CPTAC3 f9c72fed-71a0-47cb-baea-3f490be268a2 8950a8c98666ef2e52be2938ee779dc5 {"aliquot_tag": "ALQ_f110b187", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.miRNA-Seq.T.hg38 C3L-02170 LSCC miRNA-Seq tumor CPT0175560009 81dac0c4-0deb-4fda-b983-46cca868ae64_mirnaseq_gdc_realn.bam 243739839 BAM harmonized CPTAC3 903832cc-ca9e-4dfb-9e4a-16d6655e6813 ac21d7f53906ab28751d2cd4dc48b49b {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.RNA-Seq.chimeric.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.chimeric.gdc_realn.bam 29188651 BAM chimeric harmonized CPTAC3 c2641f9b-f61c-4fbd-9119-480f9bde2cbb 677115d598a296b2f113d7e9f0368968 {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.RNA-Seq.genomic.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.genomic.gdc_realn.bam 9824460612 BAM genomic harmonized CPTAC3 e78b0236-bb6b-4fbe-b8ee-c95c68cadf87 ce990bc3935b9f6eeb78d2d3cdd8f47c {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.RNA-Seq.S7_L008_R1.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3934238485 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 e53eb452-b1c7-4424-92d6-63429ebb186b 4acf54573009b33e9857c7f8c5cd7e99 {"aliquot_tag": "ALQ_f110b187", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.RNA-Seq.S7_L008_R2.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4020225425 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 bb75192c-21f5-4972-bb3d-d966d7926373 c4e90d52bcf592cb14710073a73d918f {"aliquot_tag": "ALQ_f110b187", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.RNA-Seq.transcriptome.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.transcriptome.gdc_realn.bam 10631802089 BAM transcriptome harmonized CPTAC3 ff856745-6e31-4208-81e1-e23759dbfce9 446e68cf5f14bc5853ed550a91278c43 {"aliquot_tag": "ALQ_f110b187", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.WGS.N C3L-02170 LSCC WGS blood_normal CPT0175640002 CPT0175640002.WholeGenome.RP-1303.bam 59532054822 BAM submitted_aligned CPTAC3 51eddac4-803a-45c3-a541-7292e23c2c93 cc9e32fd406c8ef7df242e8f7fee2486 {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02170.WGS.N.hg38 C3L-02170 LSCC WGS blood_normal CPT0175640002 dd54f8e5-09cc-4925-86e5-797f029e52cb_wgs_gdc_realn.bam 86046076265 BAM harmonized CPTAC3 e7b0ff87-766c-4143-978f-f5f108948904 79de1566a1ee47628f19df1063caad4a {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02170.WGS.T C3L-02170 LSCC WGS tumor CPT0175560006 CPT0175560006.WholeGenome.RP-1303.bam 63482193006 BAM submitted_aligned CPTAC3 01a1ba24-7797-434c-a487-887ceee62aa3 6660aa163385b533b3ba1af3d618df45 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.WGS.T.hg38 C3L-02170 LSCC WGS tumor CPT0175560006 5222af15-8276-44d6-927e-e46b9d44f28d_wgs_gdc_realn.bam 91723359858 BAM harmonized CPTAC3 da9c9114-f494-4d90-a45c-513173fe8bde 889d1d1c725e5ea9abcb8c62188707e9 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.WXS.N C3L-02170 LSCC WXS blood_normal CPT0175640002 CPT0175640002.WholeExome.RP-1303.bam 19615307519 BAM submitted_aligned CPTAC3 d8540548-5ba3-4562-b0e5-e6b99b75655a 3c7805cd059fc0c55cbd868c2e121c13 {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02170.WXS.N.hg38 C3L-02170 LSCC WXS blood_normal CPT0175640002 dd54f8e5-09cc-4925-86e5-797f029e52cb_wxs_gdc_realn.bam 26757263345 BAM harmonized CPTAC3 bbf1978b-1db4-4656-a991-70479d05d1f6 4c3b13d0d7c575ed56f7e586dc5bd580 {"aliquot_tag": "ALQ_9a9649c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02170.WXS.T C3L-02170 LSCC WXS tumor CPT0175560006 CPT0175560006.WholeExome.RP-1303.bam 29024736524 BAM submitted_aligned CPTAC3 3c7cc608-1008-47c5-bff2-2b3f81cce2e1 f2ecdde9aa4537c9eda9275b8d6d81a6 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02170.WXS.T.hg38 C3L-02170 LSCC WXS tumor CPT0175560006 5222af15-8276-44d6-927e-e46b9d44f28d_wxs_gdc_realn.bam 40442856125 BAM harmonized CPTAC3 4fd70b41-4cd0-4908-9142-5a155538ff12 c51b14a5303eabbccb20cee25ab634f7 {"aliquot_tag": "ALQ_61afac16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.ADD_d091988c.MethArray.Green.T C3L-02175 CCRCC Methylation_Array tumor CPT0100410009 203219650217_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c73f197d-5d99-493f-adfc-dbea318d2d16 a742c9cea44853f0a60802529202029d {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.ADD_d091988c.MethArray.Red.T C3L-02175 CCRCC Methylation_Array tumor CPT0100410009 203219650217_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 b7bfefdf-b8fc-4145-9e29-9aeebf923c02 f23b16fc12038ed2c4065713c80ffd0b {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.ADD_d091988c.WGS.T C3L-02175 CCRCC WGS tumor CPT0100410009 CPT0100410009.WholeGenome.RP-1303.bam 56642132340 BAM submitted_aligned CPTAC3 490dffaf-67a4-4bfe-82d1-1caf85c4dead 2db3cedb7e7ee031a8a0431f21698df1 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.ADD_d091988c.WGS.T.hg38 C3L-02175 CCRCC WGS tumor CPT0100410009 573d770d-55a6-413b-874b-444f2bff1b31_wgs_gdc_realn.bam 83424429662 BAM harmonized CPTAC3 71aa6238-f9f2-4374-a406-c192e6ed0154 2d000c55fb30017d3083f516535b9c70 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.ADD_d091988c.WXS.T C3L-02175 CCRCC WXS tumor CPT0100410009 CPT0100410009.WholeExome.RP-1303.bam 33972199619 BAM submitted_aligned CPTAC3 d928773d-767a-46c3-8c6d-bb6f95f4da3f 9fcf4411d17a7118592c2402c0857df7 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.ADD_d091988c.WXS.T.hg38 C3L-02175 CCRCC WXS tumor CPT0100410009 573d770d-55a6-413b-874b-444f2bff1b31_wxs_gdc_realn.bam 47301558950 BAM harmonized CPTAC3 3e4b4d1b-be24-459c-8fcf-1e464a8912df d07d5032e89fa2ba0e5d959fad934ef2 {"aliquot_tag": "ADD_d091988c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.miRNA-Seq.S25_L007_R1.T C3L-02175 CCRCC miRNA-Seq tumor CPT0100410006 180828_UNC32-K00270_0112_AHWTLNBBXX_ACTGAT_S25_L007_R1_001.unaln.bam 342586292 BAM S25_L007_R1 submitted_unaligned CPTAC3 211c7236-a41f-4447-a5bf-b9567bf60077 6737ad8177d768f81ce3df2c97afb267 {"aliquot_tag": "ALQ_402e851d", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.miRNA-Seq.T.hg38 C3L-02175 CCRCC miRNA-Seq tumor CPT0100410006 b2cf64ca-e527-4ca1-95be-a369faefa578_mirnaseq_gdc_realn.bam 384369823 BAM harmonized CPTAC3 29720da5-ae6c-4636-a1e6-ed6e59aa118b 2bc4fc41ac0318013f69c84c0cf2bc87 {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.RNA-Seq.chimeric.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.chimeric.gdc_realn.bam 42517230 BAM chimeric harmonized CPTAC3 ee4f0929-aaf5-4d93-aeb7-1dd934681ea8 a7999b02a6dad3e63a8f716d2f193d1f {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.RNA-Seq.genomic.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.genomic.gdc_realn.bam 10163917859 BAM genomic harmonized CPTAC3 8d9297a4-6bbc-41e5-95ac-28f32ff0bdc0 5146f746f96af47af4f38aa50235cde3 {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.RNA-Seq.S14_L004_R1.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R1_001.fastq.gz 4822180343 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 a55f0bfd-eb7d-40d3-864a-dc8c6831a87d b5dd0b7dced9a6a7e6c1087827eb639b {"aliquot_tag": "ALQ_402e851d", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.RNA-Seq.S14_L004_R2.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R2_001.fastq.gz 4808988017 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 c95e7cc3-6d00-4afc-8981-c0b140015d31 3798258741223f60fa284741b8cf23d1 {"aliquot_tag": "ALQ_402e851d", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.RNA-Seq.transcriptome.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.transcriptome.gdc_realn.bam 10911565485 BAM transcriptome harmonized CPTAC3 cb9da0e6-3367-4780-987e-7bc9389223a2 d7f1adbaa6d53735236edb9abe8f0888 {"aliquot_tag": "ALQ_402e851d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02175.WGS.N C3L-02175 CCRCC WGS blood_normal CPT0101930002 CPT0101930002.WholeGenome.RP-1303.bam 66291160337 BAM submitted_aligned CPTAC3 fb934f0d-1915-4149-a67d-0bdd65fa6cb9 6fe20d0bc233be67453ec96e7496e725 {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02175.WGS.N.hg38 C3L-02175 CCRCC WGS blood_normal CPT0101930002 6eadb488-015f-427c-8194-9709dff9facf_wgs_gdc_realn.bam 97648522008 BAM harmonized CPTAC3 0bff2363-4079-4835-9e0b-b698ece29edc cc0bfa8286f89a57eaa398108812d0cc {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02175.WXS.N C3L-02175 CCRCC WXS blood_normal CPT0101930002 CPT0101930002.WholeExome.RP-1303.bam 30616433475 BAM submitted_aligned CPTAC3 d5784d20-2151-473f-8e4c-b7bf553217d3 4d1e45f9e7c6157fcafff0a3ef3b35f1 {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02175.WXS.N.hg38 C3L-02175 CCRCC WXS blood_normal CPT0101930002 6eadb488-015f-427c-8194-9709dff9facf_wxs_gdc_realn.bam 42288858151 BAM harmonized CPTAC3 f6570ece-999f-4dcf-9dbe-253a821240af 1a9135e7ef877997486b1ccc48b8bec1 {"aliquot_tag": "ALQ_276a0a0e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02176.MethArray.Green.T C3L-02176 CCRCC Methylation_Array tumor CPT0100470008 202234380054_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f9d464ef-b36a-445e-b213-fe57694e7402 d651258b3eba58c29159d45008ed2490 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.MethArray.Red.T C3L-02176 CCRCC Methylation_Array tumor CPT0100470008 202234380054_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 cc4a846f-04a4-444b-9cae-bb1be625df4a e1c577bfeda95a839efbcd5a6ac6a2ea {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.miRNA-Seq.S15_L003_R1.T C3L-02176 CCRCC miRNA-Seq tumor CPT0100470006 181113_UNC31-K00269_0164_AH23NNBBXY_CTATAC_S15_L003_R1_001.unaln.bam 214036121 BAM S15_L003_R1 submitted_unaligned CPTAC3 684b9f05-6909-4722-b949-311d3181b02b a47ce2109376b9d19ae2e0c6c215912c {"aliquot_tag": "ALQ_cf6e70bd", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.miRNA-Seq.T.hg38 C3L-02176 CCRCC miRNA-Seq tumor CPT0100470006 e872156b-b366-40ee-a67f-4b32e683c9bf_mirnaseq_gdc_realn.bam 239330077 BAM harmonized CPTAC3 c2bbee26-d13f-4f92-a5cb-7a69ee5a4794 1ae7bce648c1ed7910ac1eb3d47b4f3b {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.RNA-Seq.chimeric.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.chimeric.gdc_realn.bam 32339747 BAM chimeric harmonized CPTAC3 97f83ac9-5697-4ebe-91ba-4b53e804d0aa 9e8c307736c5961141e3f0da8f49de0d {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.RNA-Seq.genomic.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.genomic.gdc_realn.bam 8017020939 BAM genomic harmonized CPTAC3 f80c5f20-c1cc-461f-95d1-8ead846569e9 62e703b15408e2b139172d516037e51f {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.RNA-Seq.S50_L004_R1.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R1_001.fastq.gz 3549869748 FASTQ S50_L004_R1 submitted_unaligned CPTAC3 8712fe93-5cf8-4ec7-b40c-20bf98353c10 96fd353b46a1bf4aaec0fdca334bb183 {"aliquot_tag": "ALQ_cf6e70bd", "sample": "S50", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.RNA-Seq.S50_L004_R2.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R2_001.fastq.gz 3972882380 FASTQ S50_L004_R2 submitted_unaligned CPTAC3 0bfd42d4-ffc2-4c4a-afbd-1563f26bccde bf10e05cf8bb9f62075f824528b7bf84 {"aliquot_tag": "ALQ_cf6e70bd", "sample": "S50", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.RNA-Seq.transcriptome.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.transcriptome.gdc_realn.bam 9343692038 BAM transcriptome harmonized CPTAC3 abac7ec3-b3e8-443d-8e34-54e90e3dd8ec cd5b8f0317133f634948d23db4f3861a {"aliquot_tag": "ALQ_cf6e70bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.WGS.N C3L-02176 CCRCC WGS blood_normal CPT0101950002 CPT0101950002.WholeGenome.RP-1303.bam 57885119134 BAM submitted_aligned CPTAC3 9641d242-e578-4f6f-9a30-c2c146ed7978 87e1cdd63c83ca6f9831321a8bcd5e19 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02176.WGS.N.hg38 C3L-02176 CCRCC WGS blood_normal CPT0101950002 253aadb4-5232-451d-a462-01613fba4d1e_wgs_gdc_realn.bam 86587170323 BAM harmonized CPTAC3 70a3d096-9863-4512-9f0b-667497ec80bf 6d2ad9b8b321dba94023ddb9ee4b4252 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02176.WGS.T C3L-02176 CCRCC WGS tumor CPT0100470008 CPT0100470008.WholeGenome.RP-1303.bam 57195549071 BAM submitted_aligned CPTAC3 8df40608-e700-469f-9590-e29f69910d69 fcb416c9d18370e5d0b90e11eddcf49a {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.WGS.T.hg38 C3L-02176 CCRCC WGS tumor CPT0100470008 f346b738-521a-4175-b152-5558f6ceb49a_wgs_gdc_realn.bam 83232025224 BAM harmonized CPTAC3 2226fc8b-e959-47a8-be94-3d45ede5cb18 2861775709751dc2f3cce270479d8937 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.WXS.A C3L-02176 CCRCC WXS tissue_normal CPT0100480006 CPT0100480006.WholeExome.RP-1303.bam 30546668313 BAM submitted_aligned CPTAC3 9aecfeae-df23-4de1-866a-40486d21f055 1a74b01d8654e845dc06c9d09cc7ab0d {"aliquot_tag": "ALQ_4d3ee76c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02176.WXS.A.hg38 C3L-02176 CCRCC WXS tissue_normal CPT0100480006 5ff28829-2091-4dd9-925e-4572fdff3c6a_wxs_gdc_realn.bam 40897067911 BAM harmonized CPTAC3 a3c2600d-f1ab-41ef-86a1-9a3c0c6f7a92 2638d2c769ce193472ace9eb105e7604 {"aliquot_tag": "ALQ_4d3ee76c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02176.WXS.N C3L-02176 CCRCC WXS blood_normal CPT0101950002 CPT0101950002.WholeExome.RP-1303.bam 28946281749 BAM submitted_aligned CPTAC3 324ed109-b926-4c98-bea6-95f4d2a90d58 b992fe2e2eaa53691a05f02ba0dcd967 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02176.WXS.N.hg38 C3L-02176 CCRCC WXS blood_normal CPT0101950002 253aadb4-5232-451d-a462-01613fba4d1e_wxs_gdc_realn.bam 39645855017 BAM harmonized CPTAC3 4fc4844f-5981-437e-8e99-0d4fe32a83f2 c5f4c9070e1c86915c82a36e9c106ea9 {"aliquot_tag": "ALQ_a82affae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02176.WXS.T C3L-02176 CCRCC WXS tumor CPT0100470008 CPT0100470008.WholeExome.RP-1303.bam 29718114090 BAM submitted_aligned CPTAC3 3771adf9-9196-491a-b657-c7ae598dce43 b9ad8350b4779ac01cb3f454c5eb10b1 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02176.WXS.T.hg38 C3L-02176 CCRCC WXS tumor CPT0100470008 f346b738-521a-4175-b152-5558f6ceb49a_wxs_gdc_realn.bam 41341132428 BAM harmonized CPTAC3 92e35959-96d6-49e7-8a5b-3905f2eb879d c187f96a01ecda1946d892878b42de86 {"aliquot_tag": "ALQ_28d65dba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.MethArray.Green.T C3L-02177 CCRCC Methylation_Array tumor CPT0100530009 202234370091_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fe50b343-c8b6-4f25-8b1e-efd8ebcd72eb 9cb159db8d1ba1e6d065131f821dcee2 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.MethArray.Red.T C3L-02177 CCRCC Methylation_Array tumor CPT0100530009 202234370091_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 a647bcd1-b702-49f1-b777-dd5b2b6f1e6d 2f2b856b39ab5fb93cf4a107b04417b2 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.miRNA-Seq.S27_L003_R1.T C3L-02177 CCRCC miRNA-Seq tumor CPT0100530006 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L003_R1_001.unaln.bam 205819376 BAM S27_L003_R1 submitted_unaligned CPTAC3 ec3b97f8-cd3b-4c35-9758-e4ff4f835983 71dfc078966c96bb36cf6108e2dab20c {"aliquot_tag": "ALQ_f1b205d8", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.miRNA-Seq.T.hg38 C3L-02177 CCRCC miRNA-Seq tumor CPT0100530006 fed580bd-5c46-4073-9529-cd8ead32c810_mirnaseq_gdc_realn.bam 234719866 BAM harmonized CPTAC3 186368ed-7e09-4bdb-b449-cf897c6baa1e f2fa6bb34de6bc070eb5c3c388da1b18 {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.RNA-Seq.chimeric.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.chimeric.gdc_realn.bam 33808724 BAM chimeric harmonized CPTAC3 9d78829a-429b-4775-9c33-46195c961a82 d3906fd5f78a429f6ffb9b8834f02796 {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.RNA-Seq.genomic.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.genomic.gdc_realn.bam 8065071777 BAM genomic harmonized CPTAC3 062746ad-2f79-4fa1-b5b0-178328997af2 613bbc04c20308f2b38ee5bff9737552 {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.RNA-Seq.S5_L008_R1.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3685570714 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 5961026c-04cc-479b-b1e7-1dff75f36632 c085175f3a3cb46d6f10321d752c13d3 {"aliquot_tag": "ALQ_f1b205d8", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.RNA-Seq.S5_L008_R2.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4080658191 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 1c3e2265-25d0-4deb-91e8-d4928530236f 29a5a5a4fcd9e2f7b0e0dfb223fb33c8 {"aliquot_tag": "ALQ_f1b205d8", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.RNA-Seq.transcriptome.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.transcriptome.gdc_realn.bam 9430415823 BAM transcriptome harmonized CPTAC3 9038519b-05df-477c-986b-a06883811925 97619d583c495c4b85222b07fdffc5da {"aliquot_tag": "ALQ_f1b205d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.WGS.N C3L-02177 CCRCC WGS blood_normal CPT0101970002 CPT0101970002.WholeGenome.RP-1303.bam 61747006129 BAM submitted_aligned CPTAC3 1ff26dea-ec82-4481-85c7-98c2d485e42b 0809c09de129c05861b6b19b4fb920fb {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02177.WGS.N.hg38 C3L-02177 CCRCC WGS blood_normal CPT0101970002 d739a74a-bbf9-4d85-9e12-e0962e2281f1_wgs_gdc_realn.bam 90415050012 BAM harmonized CPTAC3 3ca01194-5dfe-4e29-94c2-c3f5c44c4610 2628bf8bc2d78ddb0838ea4fc47126c8 {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02177.WGS.T C3L-02177 CCRCC WGS tumor CPT0100530009 CPT0100530009.WholeGenome.RP-1303.bam 57470620882 BAM submitted_aligned CPTAC3 f001beca-976b-4369-8f3b-be7eec21d015 033f04bae4260bb4504df3a4d54ddd84 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.WGS.T.hg38 C3L-02177 CCRCC WGS tumor CPT0100530009 0569b3d0-f9e3-4e5d-9277-08f5f3ba29db_wgs_gdc_realn.bam 84712398835 BAM harmonized CPTAC3 737fa359-5f39-4a63-b758-58dd5dcdfb4b 314db74478701fba89f7249bc6ca833c {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.WXS.N C3L-02177 CCRCC WXS blood_normal CPT0101970002 CPT0101970002.WholeExome.RP-1303.bam 34559551446 BAM submitted_aligned CPTAC3 c4c799c2-5e48-470e-b699-446cbf3c3422 5139d129e90e4d1d8b7388a0a1dc86d6 {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02177.WXS.N.hg38 C3L-02177 CCRCC WXS blood_normal CPT0101970002 d739a74a-bbf9-4d85-9e12-e0962e2281f1_wxs_gdc_realn.bam 47813535593 BAM harmonized CPTAC3 21a329eb-4038-4a1c-8baa-2aaf7696f8b0 3cbf70c17e59cc5a95c2b1287579aa86 {"aliquot_tag": "ALQ_d2eaacce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02177.WXS.T C3L-02177 CCRCC WXS tumor CPT0100530009 CPT0100530009.WholeExome.RP-1303.bam 36330828928 BAM submitted_aligned CPTAC3 e1c17823-1d4a-4e18-b553-af495a804cba d86a997677cd922ee8514c5cc2e68958 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02177.WXS.T.hg38 C3L-02177 CCRCC WXS tumor CPT0100530009 0569b3d0-f9e3-4e5d-9277-08f5f3ba29db_wxs_gdc_realn.bam 50053229731 BAM harmonized CPTAC3 24481ed3-de0c-4b91-bfd8-a81e9ff0870e e9add5952e497e45a30aecd339b119d5 {"aliquot_tag": "ALQ_610d1849", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02179.MethArray.Green.T C3L-02179 CCRCC Methylation_Array tumor CPT0389320006 205555390157_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 41ff0c69-78c8-4563-9259-ab499263857f 15cf4647d7995f13da014f4c08cd1dd6 {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.MethArray.Red.T C3L-02179 CCRCC Methylation_Array tumor CPT0389320006 205555390157_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 cabeb903-d62a-4c71-bddb-34f45bcb2a52 53174b8812593391a5dd3439c91f4eef {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.miRNA-Seq.S12_L001_R1.T C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GAGTGG_S12_L001_R1_001.unaln.bam 281561978 BAM S12_L001_R1 submitted_unaligned CPTAC3 89414fb0-cdab-420d-ac73-a444d66e1a03 a7273f923d450ff4277e02cc2b5065ba {"aliquot_tag": "ALQ_e2bfa404", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.miRNA-Seq.T.hg38 C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 8039278d-0564-4bd6-873c-4d1a14f0bc1f_mirnaseq_gdc_realn.bam 301360244 BAM harmonized CPTAC3 eb329e45-1460-4b24-88c1-7c9045b26e9b 9abb040b2ab297f3370de6a1d370b7da {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.RNA-Seq.chimeric.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.chimeric.gdc_realn.bam 310360652 BAM chimeric harmonized CPTAC3 9db60182-1f59-4dea-a415-36526d796640 a959cebd20d075074b10edb90f7466f7 {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.RNA-Seq.genomic.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.genomic.gdc_realn.bam 9170864242 BAM genomic harmonized CPTAC3 a66714f3-9766-4055-b289-f18edcc668c7 4e856ae0bf0b3cdc88b5bef01865fd61 {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.RNA-Seq.S15_L004_R1.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 4325578436 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 291d9ec6-e718-475c-9115-aa9e7a13f309 07972d3b26f5d6aa8c85025051ad71d8 {"aliquot_tag": "ALQ_e2bfa404", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.RNA-Seq.S15_L004_R2.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 4818831598 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 0798efc6-6a07-47da-9b5e-36bb40d30086 f5735a0009252d14e8a3a384787b5ccd {"aliquot_tag": "ALQ_e2bfa404", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.RNA-Seq.transcriptome.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.transcriptome.gdc_realn.bam 13191602594 BAM transcriptome harmonized CPTAC3 009d53c3-00d7-44cd-b87d-7be713c1f408 8cf0358abb796d482953cc4754ad9f92 {"aliquot_tag": "ALQ_e2bfa404", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.WGS.N C3L-02179 CCRCC WGS blood_normal CPT0389350002 CPT0389350002.WholeGenome.RP-2158.bam 22779104205 BAM submitted_aligned CPTAC3 2ab17a16-391c-4218-b343-67d251a3e3a2 2be1443e6c30addfe2d6ccb6af9fac0c {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02179.WGS.N.hg38 C3L-02179 CCRCC WGS blood_normal CPT0389350002 aec2bb59-3129-4c35-ae5c-0cf7d469dc5d_wgs_gdc_realn.bam 68567939964 BAM harmonized CPTAC3 2b8dad30-f19f-453b-8608-b518ad4c42af f9e408753a0d4a8248fb6830e6b4b5ee {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02179.WGS.T C3L-02179 CCRCC WGS tumor CPT0389320006 CPT0389320006.WholeGenome.RP-2158.bam 28943946031 BAM submitted_aligned CPTAC3 d170c5e9-0ca9-46ad-8d9a-84dc73b1fa65 b9a0ebe562818f7c536e826f1879c5be {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.WGS.T.hg38 C3L-02179 CCRCC WGS tumor CPT0389320006 b98cba65-1fbf-468e-bb65-d613601a14d8_wgs_gdc_realn.bam 84884110363 BAM harmonized CPTAC3 2fa8b12c-4bcb-4913-bac9-e24a99c0e7ff c62ae815291ff8a87de71e86fa796d4e {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.WXS.N C3L-02179 CCRCC WXS blood_normal CPT0389350002 CPT0389350002.WholeExome.RP-1303.bam 22387851186 BAM submitted_aligned CPTAC3 e9f8d11d-499b-4edb-b5ae-6d2a9aa0a235 c1de8258b192529ec0ee00b65fe48ed2 {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02179.WXS.N.hg38 C3L-02179 CCRCC WXS blood_normal CPT0389350002 aec2bb59-3129-4c35-ae5c-0cf7d469dc5d_wxs_gdc_realn.bam 30792973959 BAM harmonized CPTAC3 70dabd82-7033-4878-a3e3-4c357e1271df 9bc80c0405e939fe6fec2c95101a7d8a {"aliquot_tag": "ALQ_c74da19c", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-02179.WXS.T C3L-02179 CCRCC WXS tumor CPT0389320006 CPT0389320006.WholeExome.RP-1303.bam 19586402059 BAM submitted_aligned CPTAC3 6c498427-a089-414f-ac94-5d7874762bfb 5b9c96d172bbfb1f96a949624bd5d0b4 {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02179.WXS.T.hg38 C3L-02179 CCRCC WXS tumor CPT0389320006 b98cba65-1fbf-468e-bb65-d613601a14d8_wxs_gdc_realn.bam 26901144711 BAM harmonized CPTAC3 b1047446-356b-4ef5-9531-10a8c6fd90d4 2e671a571888d1028b68d40677061acf {"aliquot_tag": "ALQ_7200b995", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-02201.MethArray.Green.T C3L-02201 CCRCC Methylation_Array tumor CPT0127800006 203219640158_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4db78177-6e0b-4fac-9100-ab3646e5ae89 5211a8b7b9c838e29f64dd7e9621724a {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.MethArray.Red.T C3L-02201 CCRCC Methylation_Array tumor CPT0127800006 203219640158_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 01bdca6d-71c6-44e7-b25b-f4223d6edeca 3b2baf6f9d5254be3685f38453df24bd {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.miRNA-Seq.S2_L004_R1.T C3L-02201 CCRCC miRNA-Seq tumor CPT0127800009 190108_UNC31-K00269_0176_AHYGLVBBXX_CGATGT_S2_L004_R1_001.unaln.bam 253313343 BAM S2_L004_R1 submitted_unaligned CPTAC3 faec1d79-ad67-417a-b108-2da0b04b46b0 23a8059b85c398a27546041c5a23420a {"aliquot_tag": "ALQ_1db148b4", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.miRNA-Seq.T.hg38 C3L-02201 CCRCC miRNA-Seq tumor CPT0127800009 b5319943-3ea9-43df-8625-f4b437c8b42b_mirnaseq_gdc_realn.bam 281376760 BAM harmonized CPTAC3 007daca6-312a-48b7-8752-a24a4035fb4b f361c5f46d0d7a7b57479aa6c920e9a8 {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.RNA-Seq.chimeric.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.chimeric.gdc_realn.bam 192606932 BAM chimeric harmonized CPTAC3 9e1366a5-fd83-4c81-ad38-262c63bf87df 672e6eb0017bb78ffe12cdde1cf3c402 {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.RNA-Seq.genomic.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.genomic.gdc_realn.bam 9527776992 BAM genomic harmonized CPTAC3 dc28f02c-6cdf-4fa7-8f3f-1e9077ca3794 e543698d5d630b9fcd4fa33b8423b99b {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.RNA-Seq.S6_L003_R1.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R1_001.fastq.gz 4443227448 FASTQ S6_L003_R1 submitted_unaligned CPTAC3 2d6f17fe-6cc0-41b4-be1c-63c075b6fd28 7d179a7442aa109bb60ca29cfa02b0ce {"aliquot_tag": "ALQ_1db148b4", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.RNA-Seq.S6_L003_R2.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R2_001.fastq.gz 4803673521 FASTQ S6_L003_R2 submitted_unaligned CPTAC3 e0c70400-9aca-4795-8a1f-805f1956a943 7440500c12c5b6e495f6fcdb74c60bf9 {"aliquot_tag": "ALQ_1db148b4", "sample": "S6", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.RNA-Seq.transcriptome.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.transcriptome.gdc_realn.bam 11573340357 BAM transcriptome harmonized CPTAC3 23d9efd5-ea84-436f-ae00-0940c37ce3f2 1320a1be0142c76a8da4623546407862 {"aliquot_tag": "ALQ_1db148b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.WGS.N C3L-02201 CCRCC WGS blood_normal CPT0126610002 CPT0126610002.WholeGenome.RP-1303.bam 56953536310 BAM submitted_aligned CPTAC3 ff717f62-5e61-476b-88c8-6c939879dfa9 439f63d63338d63b11f62b12e364ec1f {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02201.WGS.N.hg38 C3L-02201 CCRCC WGS blood_normal CPT0126610002 6da8e509-63ab-4fbb-b44c-3ec96c0ef66b_wgs_gdc_realn.bam 82260301691 BAM harmonized CPTAC3 6d3096e0-f7a4-4ed7-aa13-60a0cbc537c2 f6a8230d2357f683b4f49dda721210a9 {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02201.WGS.T C3L-02201 CCRCC WGS tumor CPT0127800006 CPT0127800006.WholeGenome.RP-1303.bam 59264812104 BAM submitted_aligned CPTAC3 3ab146ac-51ba-4984-9b23-a44a634c4694 e920bdc0c8f09a2c4a2c03547adc794e {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.WGS.T.hg38 C3L-02201 CCRCC WGS tumor CPT0127800006 408a5b5c-c66e-4c7f-8584-0e853e7b9416_wgs_gdc_realn.bam 85287278995 BAM harmonized CPTAC3 4b0752a0-f65f-402c-baa9-3a987f5313c2 7a3a3a1250fe52004a26d9c2349e15b2 {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.WXS.N C3L-02201 CCRCC WXS blood_normal CPT0126610002 CPT0126610002.WholeExome.RP-1303.bam 24354628609 BAM submitted_aligned CPTAC3 cf7c8556-91f9-4b0a-82ab-2ac46b0ed021 11fdf696c6be5c1598ffb923de5a30ad {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02201.WXS.N.hg38 C3L-02201 CCRCC WXS blood_normal CPT0126610002 6da8e509-63ab-4fbb-b44c-3ec96c0ef66b_wxs_gdc_realn.bam 33405566148 BAM harmonized CPTAC3 75bc8316-3de2-4976-87c7-6f3970e00c80 7700075743ea68f92bbad698ba121d75 {"aliquot_tag": "ALQ_2b7ed248", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02201.WXS.T C3L-02201 CCRCC WXS tumor CPT0127800006 CPT0127800006.WholeExome.RP-1303.bam 17969166484 BAM submitted_aligned CPTAC3 a9aeed83-77f3-4ef7-8d94-8585efe926cd f7056842b4229836145b78747a9720e3 {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02201.WXS.T.hg38 C3L-02201 CCRCC WXS tumor CPT0127800006 408a5b5c-c66e-4c7f-8584-0e853e7b9416_wxs_gdc_realn.bam 25276326022 BAM harmonized CPTAC3 e69f124b-43eb-4fa4-85d6-f5d1002fd5e5 473981ccb9cd45b25a68b2e47874c4e1 {"aliquot_tag": "ALQ_8d0e5525", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.MethArray.Green.T C3L-02202 CCRCC Methylation_Array tumor CPT0203350005 203219650100_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4ce9be37-bb03-4ada-a5c2-96cd90e65b72 72db71b8bf2c581ca6a26d44ecc88bd0 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.MethArray.Red.T C3L-02202 CCRCC Methylation_Array tumor CPT0203350005 203219650100_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 adde3343-0e83-437b-9996-c948f93f19e2 e605514bad6293f9e8f21446d279d46e {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.miRNA-Seq.S20_L008_R1.T C3L-02202 CCRCC miRNA-Seq tumor CPT0203350008 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L008_R1_001.unaln.bam 289794974 BAM S20_L008_R1 submitted_unaligned CPTAC3 fe9c62e1-945e-4891-ab2a-1c5200401a5d 80d0d24afc94abfa2471d4e42ed906e8 {"aliquot_tag": "ALQ_4776183a", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.miRNA-Seq.T.hg38 C3L-02202 CCRCC miRNA-Seq tumor CPT0203350008 7acd45d4-8622-4760-8485-8f64b70b208c_mirnaseq_gdc_realn.bam 317389769 BAM harmonized CPTAC3 9f38c715-0f67-4270-8a73-6d2ba9085614 955b9d62d17947c20536d61fe809b773 {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.RNA-Seq.chimeric.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.chimeric.gdc_realn.bam 268473856 BAM chimeric harmonized CPTAC3 ab5e61a5-54e1-456e-bf85-24e848f3b144 0a11e2507629942b9c31afb1f38b9080 {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.RNA-Seq.genomic.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.genomic.gdc_realn.bam 6858783039 BAM genomic harmonized CPTAC3 23691684-c6c1-4265-a9d8-c3c98555bf44 1b0fb4b0cd896fc6a2f86044b8fe0d5f {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.RNA-Seq.S7_L002_R1.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 3029062493 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 0bc2b024-6b9a-4d91-9774-e4078cce9516 a959e65064a0f7856cafe35393dc9202 {"aliquot_tag": "ALQ_4776183a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.RNA-Seq.S7_L002_R2.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 3258073023 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 31ca8c25-f05d-4f44-a33e-5fec114f829c b4b998a41ad433bc4966b5eca135ba06 {"aliquot_tag": "ALQ_4776183a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.RNA-Seq.transcriptome.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.transcriptome.gdc_realn.bam 8139950475 BAM transcriptome harmonized CPTAC3 7eeb5ad0-a30b-42e8-b0ea-8a9ec9ad28a2 dd47ff0c33220f0d7540f03ac2382083 {"aliquot_tag": "ALQ_4776183a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.WGS.N C3L-02202 CCRCC WGS blood_normal CPT0204040002 CPT0204040002.WholeGenome.RP-1303.bam 57723313154 BAM submitted_aligned CPTAC3 517538fb-689f-4927-83a8-ac13f29e16c6 ee8a5ae7f15ab1e10d0e93a2e1e3bfce {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02202.WGS.N.hg38 C3L-02202 CCRCC WGS blood_normal CPT0204040002 5ad2dbd0-a413-4315-afa2-79dabea873d5_wgs_gdc_realn.bam 84026758125 BAM harmonized CPTAC3 983b75f2-1780-48f3-8bfe-f0d5ef100ac1 707fe7286e44488b9ed930d30b16910d {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02202.WGS.T C3L-02202 CCRCC WGS tumor CPT0203350005 CPT0203350005.WholeGenome.RP-1303.bam 65667720093 BAM submitted_aligned CPTAC3 ba430f00-a13b-48f5-9f48-f31d2fca0699 b057e9648e19a58275e5a5a3f2bba2f4 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.WGS.T.hg38 C3L-02202 CCRCC WGS tumor CPT0203350005 9423a87f-334a-44de-bfe1-441aa39f3f44_wgs_gdc_realn.bam 95470524059 BAM harmonized CPTAC3 e5b16677-88a5-404e-87d2-c42a3efea1c9 c82bdbba92e1df880dbf4c9ca77a22b9 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.WXS.N C3L-02202 CCRCC WXS blood_normal CPT0204040002 CPT0204040002.WholeExome.RP-1303.bam 24814702271 BAM submitted_aligned CPTAC3 674ae3ce-db9a-4d2c-a88b-5498dbc609a8 34f22162a8f243322e0337bdd1e78308 {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02202.WXS.N.hg38 C3L-02202 CCRCC WXS blood_normal CPT0204040002 5ad2dbd0-a413-4315-afa2-79dabea873d5_wxs_gdc_realn.bam 34438427159 BAM harmonized CPTAC3 7323030a-fdcb-425d-9b58-f0bec8f1fab1 af719231a584fa27f002ad808584d4a2 {"aliquot_tag": "ALQ_d9f094b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02202.WXS.T C3L-02202 CCRCC WXS tumor CPT0203350005 CPT0203350005.WholeExome.RP-1303.bam 34012797765 BAM submitted_aligned CPTAC3 dfaf4721-778f-499a-8d4a-21c60013d5ad e52935010c0e24fafe73980a42da9914 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02202.WXS.T.hg38 C3L-02202 CCRCC WXS tumor CPT0203350005 9423a87f-334a-44de-bfe1-441aa39f3f44_wxs_gdc_realn.bam 46883492557 BAM harmonized CPTAC3 e91648a7-d15b-43d9-bd18-57c3e8d76b4a db11365dfb4eb9f3a2e633414c7a55c2 {"aliquot_tag": "ALQ_39c76487", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02204.miRNA-Seq.A.hg38 C3L-02204 CCRCC miRNA-Seq tissue_normal CPT0389380005 2add5dae-4071-4259-8980-d700ebdfebdb_mirnaseq_gdc_realn.bam 411492806 BAM harmonized CPTAC3 0b327fad-0d37-4c61-aa81-cfa3359ececf a63964dfd779b62a1f2d0ee391b6c329 {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02204.miRNA-Seq.S14_L001_R1.T C3L-02204 CCRCC miRNA-Seq tumor CPT0389370009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GGTAGC_S14_L001_R1_001.unaln.bam 208289890 BAM S14_L001_R1 submitted_unaligned CPTAC3 9bc1ede8-91c8-4def-8af7-c468e5207498 c226d9a642914c503adfe6ae83d5f915 {"aliquot_tag": "ALQ_2a5f2b74", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.miRNA-Seq.S27_L002_R1.A C3L-02204 CCRCC miRNA-Seq tissue_normal CPT0389380005 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGGAAT_S27_L002_R1_001.unaln.bam 379656866 BAM S27_L002_R1 submitted_unaligned CPTAC3 8b7dd906-5f60-42fb-b2e3-86b671bf538e 9c65b836d58432ddbc8b24bea4333c8b {"aliquot_tag": "ALQ_a1b9f08e", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02204.miRNA-Seq.T.hg38 C3L-02204 CCRCC miRNA-Seq tumor CPT0389370009 4998d68d-32cd-4463-9559-8169098a565e_mirnaseq_gdc_realn.bam 218224636 BAM harmonized CPTAC3 488d2dca-2860-4509-9fa8-2f5e9b13eb8e b5d5926024b691d60a95a030a4b45041 {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.RNA-Seq.chimeric.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.chimeric.gdc_realn.bam 202900843 BAM chimeric harmonized CPTAC3 8dfa11cd-7a30-41a2-bf9d-6db5f5f06a42 de95b58f6553899fd36642a01c24face {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02204.RNA-Seq.chimeric.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.chimeric.gdc_realn.bam 155571470 BAM chimeric harmonized CPTAC3 5dc17ef4-78ef-4de3-a240-fff5b9dbdda2 5b772d0fb620b785e6cdcf256c0fd05d {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.RNA-Seq.genomic.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.genomic.gdc_realn.bam 7539358618 BAM genomic harmonized CPTAC3 09a9d005-3ea4-471a-ba24-4fd9801e8643 a18b8b8611d8e72cf26101ff7b06610a {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02204.RNA-Seq.genomic.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.genomic.gdc_realn.bam 8236782005 BAM genomic harmonized CPTAC3 75d00f8d-0d14-424c-bdc3-b77c93b5cb00 741d778d68f8953acc3e8b00ca31c0af {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.RNA-Seq.S14_L004_R1.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R1_001.fastq.gz 3921044191 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 458b1ced-ecc6-4d7a-a162-e5985bd3a4f3 9983ee4b54438c7d188765e952ae6775 {"aliquot_tag": "ALQ_2a5f2b74", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.RNA-Seq.S14_L004_R2.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R2_001.fastq.gz 4426630672 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 e12fd904-3826-45f6-9a89-3cd147f310de d5abd2f512aec4aa0568d32d8d86784f {"aliquot_tag": "ALQ_2a5f2b74", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.RNA-Seq.S29_L008_R1.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3417366481 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 1215dd59-35d8-4df7-8d6f-81c77ad6c1c2 787a9f393752174c5b3b22bfc396fa0a {"aliquot_tag": "ALQ_a1b9f08e", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02204.RNA-Seq.S29_L008_R2.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3983724232 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 f858fdc6-a4fa-49f6-ad94-9484d7bf2d80 258b89ea1bcfb027affef460c6dc53d7 {"aliquot_tag": "ALQ_a1b9f08e", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02204.RNA-Seq.transcriptome.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.transcriptome.gdc_realn.bam 9065357859 BAM transcriptome harmonized CPTAC3 03bcb054-65bf-48d2-a057-94c5486f65e7 983f82cc031bbfc8edf6a302a03dee9c {"aliquot_tag": "ALQ_a1b9f08e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02204.RNA-Seq.transcriptome.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.transcriptome.gdc_realn.bam 11309255325 BAM transcriptome harmonized CPTAC3 ba7e3e96-818b-4342-a15a-ee1d07c740dd c68bd7963425c864152a153518ca0460 {"aliquot_tag": "ALQ_2a5f2b74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.WGS.N C3L-02204 CCRCC WGS blood_normal CPT0389430002 CPT0389430002.WholeGenome.RP-2158.bam 28208508198 BAM submitted_aligned CPTAC3 da31d0eb-28b3-422e-880c-71ce48e563d4 c9be2f205ce2726ae53fcd7cdc027880 {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02204.WGS.N.hg38 C3L-02204 CCRCC WGS blood_normal CPT0389430002 e5c861cd-f3bf-47bf-9a9f-6513ae52f5b2_wgs_gdc_realn.bam 86396963412 BAM harmonized CPTAC3 d1948431-f679-41a0-8720-1a200b755448 62af9f21dcd1e0e88edb07c6840fb419 {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02204.WGS.T C3L-02204 CCRCC WGS tumor CPT0389370006 CPT0389370006.WholeGenome.RP-2158.bam 24528002030 BAM submitted_aligned CPTAC3 7753385e-7c08-420e-b379-ee8fcfda5601 d5300056c34b558d0bbebaa6eb4e80cc {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.WGS.T.hg38 C3L-02204 CCRCC WGS tumor CPT0389370006 b3f7c849-7e1c-48b6-9d0a-1fc1e1d36d5e_wgs_gdc_realn.bam 73938478998 BAM harmonized CPTAC3 e3d7e2c5-52cb-4b4c-b678-6c6946bc7acc b04b1a00803dc4194be4155f7dbd69b7 {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.WXS.N C3L-02204 CCRCC WXS blood_normal CPT0389430002 CPT0389430002.WholeExome.RP-1303.bam 25281058829 BAM submitted_aligned CPTAC3 c3fd456b-5d6a-48a0-8e76-e8ffe3a4b330 01e9f8e922bf0af8dbed68e8a32ef4ab {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02204.WXS.N.hg38 C3L-02204 CCRCC WXS blood_normal CPT0389430002 e5c861cd-f3bf-47bf-9a9f-6513ae52f5b2_wxs_gdc_realn.bam 34908838410 BAM harmonized CPTAC3 40e5969d-be88-4517-a82e-6edaa36745b7 736c3f03d89ca4977879b89527443974 {"aliquot_tag": "ALQ_55086484", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02204.WXS.T C3L-02204 CCRCC WXS tumor CPT0389370006 CPT0389370006.WholeExome.RP-1303.bam 30754089845 BAM submitted_aligned CPTAC3 6835f8c5-0a43-4b5a-bdde-4093f65b5751 2e6f06552091734052cc0f2b579fa07b {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02204.WXS.T.hg38 C3L-02204 CCRCC WXS tumor CPT0389370006 b3f7c849-7e1c-48b6-9d0a-1fc1e1d36d5e_wxs_gdc_realn.bam 42899552367 BAM harmonized CPTAC3 c9695364-4619-42ac-9c27-bb8624cc44eb 99c55b822b711e9bfacc85c10829428e {"aliquot_tag": "ALQ_bae036e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02208.MethArray.Green.T C3L-02208 CCRCC Methylation_Array tumor CPT0171890011 203219640160_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0fcf2422-53d3-4cfb-bf57-b9fd6756e56e 6b958b82b1757e1e2129301cd0114507 {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.MethArray.Red.T C3L-02208 CCRCC Methylation_Array tumor CPT0171890011 203219640160_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b31528d-96d5-4e5f-8047-855dc3400eda a358cd01d22a8ccb0fc434cb3bc0ed83 {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.miRNA-Seq.A.hg38 C3L-02208 CCRCC miRNA-Seq tissue_normal CPT0171900006 45f3f999-f4ba-4128-b51c-78d94505154e_mirnaseq_gdc_realn.bam 300880929 BAM harmonized CPTAC3 5387f5ad-fba7-43bd-addc-bcec05b207f3 1d6afa96d3919adc92c2af93f585939e {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02208.miRNA-Seq.S16_L002_R1.A C3L-02208 CCRCC miRNA-Seq tissue_normal CPT0171900006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGTCA_S16_L002_R1_001.unaln.bam 277801776 BAM S16_L002_R1 submitted_unaligned CPTAC3 450c632d-09b9-408f-a7d1-b186142c3573 e3394caf73429e875fafc32c45f74589 {"aliquot_tag": "ALQ_6d62bdde", "sample": "S16", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02208.miRNA-Seq.S21_L004_R1.T C3L-02208 CCRCC miRNA-Seq tumor CPT0171890009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L004_R1_001.unaln.bam 180375201 BAM S21_L004_R1 submitted_unaligned CPTAC3 4b92de22-eb02-4a71-8828-2fbed8aa5deb fd7f0d169d890cb9f651c35ebc9bdcba {"aliquot_tag": "ALQ_3b91119b", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.miRNA-Seq.T.hg38 C3L-02208 CCRCC miRNA-Seq tumor CPT0171890009 06b7ce05-9228-4221-93cf-db3a8663f1a5_mirnaseq_gdc_realn.bam 199233805 BAM harmonized CPTAC3 6c88f57e-1470-46fb-97a7-42b28cdf6400 2c6652c6511d589395c81b0ca54958a9 {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.RNA-Seq.chimeric.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.chimeric.gdc_realn.bam 82060706 BAM chimeric harmonized CPTAC3 a84dbec5-9434-4932-8b4a-b08d91657fa1 a059d9f9c4eaedd9026a55af047ca998 {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02208.RNA-Seq.chimeric.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.chimeric.gdc_realn.bam 33735601 BAM chimeric harmonized CPTAC3 d1a9660f-1bae-4595-9fb9-0aef9148235c 1429a4b08e539c2ec5cfbd7664754bf0 {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.RNA-Seq.genomic.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.genomic.gdc_realn.bam 8456553027 BAM genomic harmonized CPTAC3 e009a4de-45d9-4c7d-82b3-41c10b50c92b b4991ccd030fc9a7d9e9eddc8158d51f {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02208.RNA-Seq.genomic.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.genomic.gdc_realn.bam 6769791965 BAM genomic harmonized CPTAC3 04e43b9a-45f3-4d01-b134-ef6293878a83 16640a16992efd628eda50d2e4876a6a {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.RNA-Seq.S13_L006_R1.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R1_001.fastq.gz 3782533384 FASTQ S13_L006_R1 submitted_unaligned CPTAC3 bcb43e2d-a2fb-4d53-8e68-1425c00672d5 c7dd1d946af2852a84ce0111be395e28 {"aliquot_tag": "ALQ_6d62bdde", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02208.RNA-Seq.S13_L006_R2.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R2_001.fastq.gz 4068249957 FASTQ S13_L006_R2 submitted_unaligned CPTAC3 fd5987b2-29a2-4bdd-b79c-2f23ea618e0b a5da1f5eec41b440c9d84f0065362ecf {"aliquot_tag": "ALQ_6d62bdde", "sample": "S13", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02208.RNA-Seq.S15_L004_R1.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R1_001.fastq.gz 3287953515 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 1ef9c3e1-60c0-49d5-9b39-8081f0001d9c 89ea33185cf8af625dabb374590e5f5d {"aliquot_tag": "ALQ_3b91119b", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.RNA-Seq.S15_L004_R2.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R2_001.fastq.gz 3532810862 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 877f5fd6-73d4-4659-821f-c854e2956b23 bdfeb7e4caaf753db33a37c2b72a2ca5 {"aliquot_tag": "ALQ_3b91119b", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.RNA-Seq.transcriptome.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.transcriptome.gdc_realn.bam 9939028411 BAM transcriptome harmonized CPTAC3 64ac38d1-3df2-4cf0-a146-373abc8dbf67 b481cc6230f548b5cc19dbbf6e27dba5 {"aliquot_tag": "ALQ_6d62bdde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02208.RNA-Seq.transcriptome.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.transcriptome.gdc_realn.bam 9514349643 BAM transcriptome harmonized CPTAC3 23b5ff1d-cf8f-4153-9e76-585f91448358 83c2b571fe77978e8eea3505b971d59c {"aliquot_tag": "ALQ_3b91119b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.WGS.N C3L-02208 CCRCC WGS blood_normal CPT0167350002 CPT0167350002.WholeGenome.RP-1303.bam 55839634059 BAM submitted_aligned CPTAC3 ad73a462-2eea-48ad-81f8-b4a55a730077 970cb02efbc02f4f40e171fa90c0b6b0 {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02208.WGS.N.hg38 C3L-02208 CCRCC WGS blood_normal CPT0167350002 22c82d21-f2f4-460b-9769-87e602ad349e_wgs_gdc_realn.bam 80586728189 BAM harmonized CPTAC3 1a0dfa3e-7be7-4ba1-9610-7e710696d753 00ad2ccdefc3d03f55d05eaa3736c0ad {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02208.WGS.T C3L-02208 CCRCC WGS tumor CPT0171890011 CPT0171890011.WholeGenome.RP-1303.bam 56115625158 BAM submitted_aligned CPTAC3 6cbbb001-cf5c-4d36-b3f7-3d960e5bb14e 3cec41ef2f741a6232777b8c7934f99a {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.WGS.T.hg38 C3L-02208 CCRCC WGS tumor CPT0171890011 82962a1e-b1ac-4047-8bf9-e1f3b6396ef0_wgs_gdc_realn.bam 81061037434 BAM harmonized CPTAC3 c85b8bdc-96e4-4501-be74-ccf02c4a358b 09de4bd3db92edb9274b6c040e024d7a {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.WXS.N C3L-02208 CCRCC WXS blood_normal CPT0167350002 CPT0167350002.WholeExome.RP-1303.bam 31333107416 BAM submitted_aligned CPTAC3 10d41572-475e-4f61-ae5f-0e26f071ee1d b7ff59c7ee7abf40a1034770b9cf8a69 {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02208.WXS.N.hg38 C3L-02208 CCRCC WXS blood_normal CPT0167350002 22c82d21-f2f4-460b-9769-87e602ad349e_wxs_gdc_realn.bam 43611033439 BAM harmonized CPTAC3 4c756b28-f06c-41ef-92d7-673433ee4403 4f8988c6843c22951b762f9853b5dad1 {"aliquot_tag": "ALQ_ac0ee075", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02208.WXS.T C3L-02208 CCRCC WXS tumor CPT0171890011 CPT0171890011.WholeExome.RP-1303.bam 26609745186 BAM submitted_aligned CPTAC3 d4d34b94-4f0b-4ecf-97c7-3cb9e4555fd3 a81d307245977d7fabf48777986bcf2b {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02208.WXS.T.hg38 C3L-02208 CCRCC WXS tumor CPT0171890011 82962a1e-b1ac-4047-8bf9-e1f3b6396ef0_wxs_gdc_realn.bam 37112985835 BAM harmonized CPTAC3 3b8ba497-d4f7-4c9f-9be2-298b475a4164 56ba5bf927b737e1b4ab77d99745fe28 {"aliquot_tag": "ALQ_2c51a8e8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02210.MethArray.Green.T C3L-02210 CCRCC Methylation_Array tumor CPT0389570006 205589730156_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 12d0b20b-37e0-4dd6-a24e-2a1aa2ecafab 44b55cebcb826a746eec6619f4159a7b {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.MethArray.Red.T C3L-02210 CCRCC Methylation_Array tumor CPT0389570006 205589730156_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 d1ce67b9-5465-4c44-9db8-492e79987d5d e615d0486908d97082ca39ac3b5ca278 {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.miRNA-Seq.S6_L001_R1.T C3L-02210 CCRCC miRNA-Seq tumor CPT0389570009 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATTCCT_S6_L001_R1_001.unaln.bam 311277713 BAM S6_L001_R1 submitted_unaligned CPTAC3 e35d5160-3871-44c0-aaeb-7b77f52990a1 f74e7097ab1f206c173a9e5ddc25efb4 {"aliquot_tag": "ALQ_fc06c869", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.miRNA-Seq.T.hg38 C3L-02210 CCRCC miRNA-Seq tumor CPT0389570009 afa17d90-78b8-4359-a3a7-8e3f9d90f3a7_mirnaseq_gdc_realn.bam 338364995 BAM harmonized CPTAC3 1cbcdd4f-5c05-439b-a98a-1dbade6cd054 8f3151c875a391b497dcc38877b13c7f {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.RNA-Seq.chimeric.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.chimeric.gdc_realn.bam 423227566 BAM chimeric harmonized CPTAC3 cc6643e5-4a31-4fcb-993f-4bceee8d6df6 a98a352784af9c582c562e654436da28 {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.RNA-Seq.genomic.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.genomic.gdc_realn.bam 10086427400 BAM genomic harmonized CPTAC3 38aed37c-be55-446a-9f2c-59a249b50a95 be00c3d7f5e341bebcb8f8548da6a8a6 {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.RNA-Seq.S10_L003_R1.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 4757703509 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 3f0311f3-2133-4706-8ae5-8503af6b41b7 9feab2c8573075730f54258a787e8b43 {"aliquot_tag": "ALQ_fc06c869", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.RNA-Seq.S10_L003_R2.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 5307998100 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 be904ae4-da51-4c77-9fdf-72edf282f8b2 bac95b820aa950a679b077e82a8f3a99 {"aliquot_tag": "ALQ_fc06c869", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.RNA-Seq.transcriptome.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.transcriptome.gdc_realn.bam 11955512900 BAM transcriptome harmonized CPTAC3 6425f959-86e8-4fd1-a973-6b58198a1004 f9f1d9f1c11f39368647b01c8e5443b8 {"aliquot_tag": "ALQ_fc06c869", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.WGS.N C3L-02210 CCRCC WGS blood_normal CPT0389630002 CPT0389630002.WholeGenome.RP-2158.bam 27219308781 BAM submitted_aligned CPTAC3 6e90d2bd-0871-41a2-a0b6-0d784299720a c51c7eabb7c9173adf7568919dfc883c {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02210.WGS.N.hg38 C3L-02210 CCRCC WGS blood_normal CPT0389630002 f32999ce-095a-4dfa-9451-d775f9ca0632_wgs_gdc_realn.bam 80843815084 BAM harmonized CPTAC3 0c683470-3bd2-4eb5-b1dc-625e95838809 4ac737fbd278bf9f0ec05498746764b4 {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02210.WGS.T C3L-02210 CCRCC WGS tumor CPT0389570006 CPT0389570006.WholeGenome.RP-2158.bam 29998002896 BAM submitted_aligned CPTAC3 2c98cbba-55a7-4aec-bc8c-645a71c79e4d 49187dfc7cb18a71ac4dfaa6aa7fa8ac {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.WGS.T.hg38 C3L-02210 CCRCC WGS tumor CPT0389570006 88e3c2a2-1d50-4943-871f-9c6729f602d3_wgs_gdc_realn.bam 93070812856 BAM harmonized CPTAC3 e87c6400-3016-4c07-a921-782f711a3656 24309beb7c041ee52479d3874ccfcd44 {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.WXS.N C3L-02210 CCRCC WXS blood_normal CPT0389630002 CPT0389630002.WholeExome.RP-1303.bam 24790001326 BAM submitted_aligned CPTAC3 b5a1bc5f-8acd-4144-941a-30aa03ca9493 e775a4b9f7f8950101c6bce347dc7e17 {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02210.WXS.N.hg38 C3L-02210 CCRCC WXS blood_normal CPT0389630002 f32999ce-095a-4dfa-9451-d775f9ca0632_wxs_gdc_realn.bam 33979563162 BAM harmonized CPTAC3 8691119f-73b6-4c05-bba5-65ac17a123c9 6b9490ea7d88ecbc9eff4a2129f2d8ab {"aliquot_tag": "ALQ_18c0c58f", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-02210.WXS.T C3L-02210 CCRCC WXS tumor CPT0389570006 CPT0389570006.WholeExome.RP-1303.bam 23756908258 BAM submitted_aligned CPTAC3 0eda1904-a22d-406c-bd91-d104f4d02f1c e85dd73edd1e07f0dd22561cf1cdc9e2 {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02210.WXS.T.hg38 C3L-02210 CCRCC WXS tumor CPT0389570006 88e3c2a2-1d50-4943-871f-9c6729f602d3_wxs_gdc_realn.bam 32782034486 BAM harmonized CPTAC3 bde20e4b-b999-4fda-b7db-618b467f2e2c ab06bbd816b0e8bfb6368db407479e4a {"aliquot_tag": "ALQ_6cb9d5f8", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-02211.MethArray.Green.T C3L-02211 CCRCC Methylation_Array tumor CPT0127860006 203219650217_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b2d7ef83-43e3-42b8-a3c6-ccdae9fd2562 c0791dcc296b1fbc10b54ddd1b0bf502 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.MethArray.Red.T C3L-02211 CCRCC Methylation_Array tumor CPT0127860006 203219650217_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 62a3abf1-6ab1-44d1-9720-64bcc37b22c6 f5c18ce5c3ed3dfcccc1c31b13f3d4f0 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.miRNA-Seq.A.hg38 C3L-02211 CCRCC miRNA-Seq tissue_normal CPT0127870006 e08ac1ca-ef98-406c-8485-b84029c08c92_mirnaseq_gdc_realn.bam 333568848 BAM harmonized CPTAC3 473c8474-476d-4aa7-99e0-db642808d21f c21554e39c3331ea84bbee6e39aa5da0 {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02211.miRNA-Seq.S13_L002_R1.A C3L-02211 CCRCC miRNA-Seq tissue_normal CPT0127870006 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L002_R1_001.unaln.bam 302707327 BAM S13_L002_R1 submitted_unaligned CPTAC3 2567d6e9-3b35-4849-aad9-2ebc11dff3db 46fd29970aebb1063460ca2bb0f69ab8 {"aliquot_tag": "ALQ_3f2e8935", "sample": "S13", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02211.miRNA-Seq.S4_L004_R1.T C3L-02211 CCRCC miRNA-Seq tumor CPT0127860008 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L004_R1_001.unaln.bam 250064796 BAM S4_L004_R1 submitted_unaligned CPTAC3 39a27af1-45dc-477d-aaf5-fb83b273c677 75240265910594566eb0062c020f22fd {"aliquot_tag": "ALQ_e5f68d82", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.miRNA-Seq.T.hg38 C3L-02211 CCRCC miRNA-Seq tumor CPT0127860008 dce7f65e-63a1-423f-bbc5-c872c1eddd4a_mirnaseq_gdc_realn.bam 274973094 BAM harmonized CPTAC3 c3d394e7-38c5-4202-86b8-781d5de97b5a 9111c7ad7d88b02ef3f4c457fa8ba649 {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.RNA-Seq.chimeric.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.chimeric.gdc_realn.bam 76674249 BAM chimeric harmonized CPTAC3 fd79ff1e-e0ec-47ae-8f7a-9fe4f46b0162 6201c2ae110384865ede669dcc5ef7b2 {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02211.RNA-Seq.chimeric.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.chimeric.gdc_realn.bam 87362412 BAM chimeric harmonized CPTAC3 fcda988c-7177-4d49-9a28-7d67db6f008c 3f2b4c2ffec886935f9432636dc69267 {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.RNA-Seq.genomic.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.genomic.gdc_realn.bam 9667198615 BAM genomic harmonized CPTAC3 92f684a5-3119-4680-bd3a-f192b8137af1 0603b3cf126777db792055fcdb393e1c {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02211.RNA-Seq.genomic.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.genomic.gdc_realn.bam 8308246470 BAM genomic harmonized CPTAC3 0b8a0e14-8492-4fa3-9908-4fe51f66fa67 8f5bf04768a790f8a1e4ec37bbc7029b {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.RNA-Seq.S4_L005_R1.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R1_001.fastq.gz 4261517679 FASTQ S4_L005_R1 submitted_unaligned CPTAC3 2a3d8d8a-a974-4899-b9b3-8e3827ea67c0 428918ce7b0c12eeb5b2fc565d900421 {"aliquot_tag": "ALQ_3f2e8935", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02211.RNA-Seq.S4_L005_R2.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R2_001.fastq.gz 4693856104 FASTQ S4_L005_R2 submitted_unaligned CPTAC3 94beab6e-ce2a-4376-95a3-6f319bff9e2d e2f734fbb19db047bd5ef75dc5f90832 {"aliquot_tag": "ALQ_3f2e8935", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02211.RNA-Seq.S8_L003_R1.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R1_001.fastq.gz 3837650510 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 3734575e-f4f1-49e9-b8e9-659f90dd1a59 6388187f0dac37ba8c4abbff5e3be3a3 {"aliquot_tag": "ALQ_e5f68d82", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.RNA-Seq.S8_L003_R2.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R2_001.fastq.gz 4075759096 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 3f7da9a4-afe7-4a98-a6f4-c42a40b3d1ba 8ff155c41ccc101446ed3e6a9f86be6c {"aliquot_tag": "ALQ_e5f68d82", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.RNA-Seq.transcriptome.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.transcriptome.gdc_realn.bam 10440770820 BAM transcriptome harmonized CPTAC3 2dd92c15-7be9-422c-b350-f089ead90e4f 0bdec35df72b393ed0111b6effe53527 {"aliquot_tag": "ALQ_3f2e8935", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02211.RNA-Seq.transcriptome.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.transcriptome.gdc_realn.bam 9551076540 BAM transcriptome harmonized CPTAC3 7b88ec03-fb2c-4e05-964f-5733f350d61d 9af5ba79ebde70daba584db47cb8b2e8 {"aliquot_tag": "ALQ_e5f68d82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.WGS.N C3L-02211 CCRCC WGS blood_normal CPT0126630002 CPT0126630002.WholeGenome.RP-1303.bam 53322244529 BAM submitted_aligned CPTAC3 1f011ea2-ad6a-4d1a-9b9d-0d7f9279957b 0183396a9002e5290f5676ee370a51ba {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02211.WGS.N.hg38 C3L-02211 CCRCC WGS blood_normal CPT0126630002 d435d723-817c-4059-989a-a888406d22ed_wgs_gdc_realn.bam 77839644327 BAM harmonized CPTAC3 54cdcfad-7d64-49d1-a975-dec8b6315631 532a459e8c1e5e7082e635f39dbb8422 {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02211.WGS.T C3L-02211 CCRCC WGS tumor CPT0127860006 CPT0127860006.WholeGenome.RP-1303.bam 60583694480 BAM submitted_aligned CPTAC3 a60f9555-0225-4e0d-b783-7235ea259a26 e88db8b8a44f479287405e422a95ab94 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.WGS.T.hg38 C3L-02211 CCRCC WGS tumor CPT0127860006 efa35bcb-d88d-4858-a71a-4f2b3c0f58d8_wgs_gdc_realn.bam 88667444814 BAM harmonized CPTAC3 44c59a04-00f3-458a-bff3-0595467c0ff4 edd5a04f160064cad9fcd6496f8d533d {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.WXS.N C3L-02211 CCRCC WXS blood_normal CPT0126630002 CPT0126630002.WholeExome.RP-1303.bam 20089125974 BAM submitted_aligned CPTAC3 46ed2eb1-f5ad-40d6-bd0a-5993212002c8 11931155c5c65edd119e2339d8775332 {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02211.WXS.N.hg38 C3L-02211 CCRCC WXS blood_normal CPT0126630002 d435d723-817c-4059-989a-a888406d22ed_wxs_gdc_realn.bam 27722863681 BAM harmonized CPTAC3 8f8e9b44-7943-485d-87c7-64071c0716cb 04dde0690c2c262d65ad784f1e46190a {"aliquot_tag": "ALQ_51be8128", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02211.WXS.T C3L-02211 CCRCC WXS tumor CPT0127860006 CPT0127860006.WholeExome.RP-1303.bam 27355923333 BAM submitted_aligned CPTAC3 5b658275-c459-4be1-b9ae-5f6ff0836a66 95e19270ab4ed8e1e79efcbd9c49a2a4 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02211.WXS.T.hg38 C3L-02211 CCRCC WXS tumor CPT0127860006 efa35bcb-d88d-4858-a71a-4f2b3c0f58d8_wxs_gdc_realn.bam 37560817145 BAM harmonized CPTAC3 6319ea19-df18-4ad2-89f7-79d79bfcd0d2 b5c5064c9d9958364df827a176fa17f9 {"aliquot_tag": "ALQ_24ea085", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02212.MethArray.Green.T C3L-02212 CCRCC Methylation_Array tumor CPT0389450006 205589730156_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 142be6e1-c0c8-4f87-945a-4d1d2cb800da 757b5aa4d2fec0bd7b3980d0601357b8 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.MethArray.Red.T C3L-02212 CCRCC Methylation_Array tumor CPT0389450006 205589730156_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 ba0a1641-c82c-459b-ba85-63675d381445 b8393e6f10b4879e092a17795bd31228 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.miRNA-Seq.A.hg38 C3L-02212 CCRCC miRNA-Seq tissue_normal CPT0389460006 15d01bbe-834f-44f8-b796-d0569a77762a_mirnaseq_gdc_realn.bam 359534376 BAM harmonized CPTAC3 3be36556-d608-4c7f-a751-c4326319a0a2 4bb4548e438aae56d06cff3ebfa9cdbe {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02212.miRNA-Seq.S1_L001_R1.T C3L-02212 CCRCC miRNA-Seq tumor CPT0389450009 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 345248675 BAM S1_L001_R1 submitted_unaligned CPTAC3 0bbc4ad8-b663-4a46-a139-1789329d42da a9a5dfdd0bee4bfefec2d67e70c74c8b {"aliquot_tag": "ALQ_4d9a48ac", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.miRNA-Seq.S4_L001_R1.A C3L-02212 CCRCC miRNA-Seq tissue_normal CPT0389460006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATGAGC_S4_L001_R1_001.unaln.bam 330705484 BAM S4_L001_R1 submitted_unaligned CPTAC3 5ac0ef5a-eb41-4b8f-97bd-bcd4e0a8e9b8 f4819349ab066d92ffa8b848bf02092e {"aliquot_tag": "ALQ_9a852fed", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02212.miRNA-Seq.T.hg38 C3L-02212 CCRCC miRNA-Seq tumor CPT0389450009 8c8b6c5a-b43e-4650-9b3a-bd5486196b58_mirnaseq_gdc_realn.bam 371910243 BAM harmonized CPTAC3 3d13c724-b168-4966-9a8e-b25e7a23bd57 df878d416e0a31d744893633ff25ba1c {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.RNA-Seq.chimeric.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.chimeric.gdc_realn.bam 433928123 BAM chimeric harmonized CPTAC3 6cf1758a-4b51-4aec-aab6-20c7783cb916 6cbee8459e10b094ef7e22e431196a79 {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02212.RNA-Seq.chimeric.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.chimeric.gdc_realn.bam 250265936 BAM chimeric harmonized CPTAC3 4a739bf0-3c65-471b-8885-d74976ddf298 af1bceb40dc6be2e0adec6c00cc833d4 {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.RNA-Seq.genomic.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.genomic.gdc_realn.bam 7809179218 BAM genomic harmonized CPTAC3 b30fc29e-5976-4550-8aa7-caf4bd7646f4 dd918b94b0c3bc8b997ccfeba5f25839 {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02212.RNA-Seq.genomic.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.genomic.gdc_realn.bam 6755871833 BAM genomic harmonized CPTAC3 3e47096f-3602-41ad-badf-4546d2b7c5fc e9dd7ab4f06701a6723306d8962c6604 {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.RNA-Seq.S11_L003_R1.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3497719425 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 18900f0a-a26d-498f-bfb0-30e04613d013 c8de071ef3d65f850730192457074983 {"aliquot_tag": "ALQ_9a852fed", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02212.RNA-Seq.S11_L003_R2.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4013916891 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 08361579-ffdf-4756-bdba-c701cc5f107e c2793fc02dfc08b121fb07fcdec1a630 {"aliquot_tag": "ALQ_9a852fed", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02212.RNA-Seq.S9_L003_R1.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 3220450476 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 b6dfd7fd-e0a6-4c74-ac40-98222b29a5b9 e32ccac13ebc10d113dd81155c4f5d85 {"aliquot_tag": "ALQ_4d9a48ac", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.RNA-Seq.S9_L003_R2.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 3546736918 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 a1f6224c-a3dc-4f45-9929-6411132764a3 32455b5a034973e195aa6b6aeb45e105 {"aliquot_tag": "ALQ_4d9a48ac", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.RNA-Seq.transcriptome.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.transcriptome.gdc_realn.bam 8107275388 BAM transcriptome harmonized CPTAC3 55c428a7-0b23-4e89-af6c-6425c2d1427a 68f4de4dd63e0a9eba6669f59c43054c {"aliquot_tag": "ALQ_9a852fed", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02212.RNA-Seq.transcriptome.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.transcriptome.gdc_realn.bam 7540878003 BAM transcriptome harmonized CPTAC3 64b4929c-96b4-4b7b-b316-752c71616f63 7c3d3c3ae5c6fae71cd3308c709394ca {"aliquot_tag": "ALQ_4d9a48ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.WGS.N C3L-02212 CCRCC WGS blood_normal CPT0389550002 CPT0389550002.WholeGenome.RP-2158.bam 27965064197 BAM submitted_aligned CPTAC3 aba5203b-9c1a-4911-b05b-6af1110cfa36 95b28ff8c4f6eca568a341b732882852 {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02212.WGS.N.hg38 C3L-02212 CCRCC WGS blood_normal CPT0389550002 88ba4cad-fb6d-4b71-8659-89062560a40d_wgs_gdc_realn.bam 83941558361 BAM harmonized CPTAC3 387ba7c9-e96b-4e06-bfe8-608f41402e3f 06185458f6db54c6da81994127cec46c {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02212.WGS.T C3L-02212 CCRCC WGS tumor CPT0389450006 CPT0389450006.WholeGenome.RP-2158.bam 25650571429 BAM submitted_aligned CPTAC3 1c129e7b-697e-4e1a-a1a4-f4a536c14790 706bd5ce76a20a89ad9a738bd447db12 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.WGS.T.hg38 C3L-02212 CCRCC WGS tumor CPT0389450006 0e7e1435-3b74-4313-8fbf-91c262e887ce_wgs_gdc_realn.bam 77092159353 BAM harmonized CPTAC3 419b567c-e64c-4c63-9a90-e281f738a5c3 b6eff8acf7bb8977f02ee11f4d99b9fd {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.WXS.N C3L-02212 CCRCC WXS blood_normal CPT0389550002 CPT0389550002.WholeExome.RP-1303.bam 23231524501 BAM submitted_aligned CPTAC3 40be3097-2231-4e2e-8458-24081ef7d314 a1efa42a2ece30d015a0a903b8ee6e8d {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02212.WXS.N.hg38 C3L-02212 CCRCC WXS blood_normal CPT0389550002 88ba4cad-fb6d-4b71-8659-89062560a40d_wxs_gdc_realn.bam 31758239895 BAM harmonized CPTAC3 dff997c5-c0c5-42d0-aa80-d0ba691f429c acf89babaaad228f635266bd8a45dbeb {"aliquot_tag": "ALQ_11144281", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-02212.WXS.T C3L-02212 CCRCC WXS tumor CPT0389450006 CPT0389450006.WholeExome.RP-1303.bam 20746730518 BAM submitted_aligned CPTAC3 65e728a2-0549-42fe-aaa1-8a7434c3f5c1 ba36cdb09b5efa0667219d849c825baa {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02212.WXS.T.hg38 C3L-02212 CCRCC WXS tumor CPT0389450006 0e7e1435-3b74-4313-8fbf-91c262e887ce_wxs_gdc_realn.bam 28804069539 BAM harmonized CPTAC3 164f6265-440f-44d5-bc29-dde395c9926e 22c3e798bca3af888a257d821aa477c4 {"aliquot_tag": "ALQ_dd25553d", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-02214.MethArray.Green.T C3L-02214 CCRCC Methylation_Array tumor CPT0127920006 203219640047_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7a35709d-17c6-4a27-9d3b-a8816b088446 9b06d609a0f5de58d5171f26cd59c643 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.MethArray.Red.T C3L-02214 CCRCC Methylation_Array tumor CPT0127920006 203219640047_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 03439867-2ce6-4072-ba56-dd4c4a19a57d 06450b58c397a9b325b708e6e13061a3 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.miRNA-Seq.S3_L004_R1.T C3L-02214 CCRCC miRNA-Seq tumor CPT0127920008 190108_UNC31-K00269_0176_AHYGLVBBXX_TTAGGC_S3_L004_R1_001.unaln.bam 205652870 BAM S3_L004_R1 submitted_unaligned CPTAC3 5d04b939-cddd-4a57-9a01-f08560880a35 182ddb70607c74b0cfdb279ae8f67763 {"aliquot_tag": "ALQ_db2af8e7", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.miRNA-Seq.T.hg38 C3L-02214 CCRCC miRNA-Seq tumor CPT0127920008 ef2abf2a-a4cd-4816-81a6-91878425d5d9_mirnaseq_gdc_realn.bam 235963168 BAM harmonized CPTAC3 204a3f95-87ea-47c2-a2e9-dc0877de83dc 36a521bcc2dbccb206451c500adc70a6 {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.RNA-Seq.chimeric.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.chimeric.gdc_realn.bam 63506775 BAM chimeric harmonized CPTAC3 555e37b8-c7db-451c-a9ac-6fa4b751de61 c552c74e6781e5b66b429f5777e40dec {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.RNA-Seq.genomic.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.genomic.gdc_realn.bam 8204528860 BAM genomic harmonized CPTAC3 8789598f-a95a-4a4e-b41b-9e07db19b507 4103a3494b7e5f67ddc9189ef5f21b11 {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.RNA-Seq.S5_L003_R1.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R1_001.fastq.gz 3722281711 FASTQ S5_L003_R1 submitted_unaligned CPTAC3 3ac2c4d5-1263-40d2-a4c8-463402e34374 890692f625e57c3d58b5ce97715f6875 {"aliquot_tag": "ALQ_db2af8e7", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.RNA-Seq.S5_L003_R2.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R2_001.fastq.gz 4021584290 FASTQ S5_L003_R2 submitted_unaligned CPTAC3 67079328-05bc-49bd-b6a2-a24ee5b75d40 dc7ff3b399df9ffe516b2087d4a52732 {"aliquot_tag": "ALQ_db2af8e7", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.RNA-Seq.transcriptome.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.transcriptome.gdc_realn.bam 9230135938 BAM transcriptome harmonized CPTAC3 0ae249ee-3c3b-45c9-86d9-06861a20d2be 5dd714e16a84b40e9861ca0da460d61f {"aliquot_tag": "ALQ_db2af8e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.WGS.N C3L-02214 CCRCC WGS blood_normal CPT0126590002 CPT0126590002.WholeGenome.RP-1303.bam 52017495298 BAM submitted_aligned CPTAC3 3204a451-9657-4d6f-b864-53a999c01c29 9fc1f5ce0f1f61b623f34c772d28b854 {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02214.WGS.N.hg38 C3L-02214 CCRCC WGS blood_normal CPT0126590002 a85adbcf-2937-4743-b96c-fc696acc8ebf_wgs_gdc_realn.bam 76052930745 BAM harmonized CPTAC3 fbc38c8d-ab6b-4991-9508-c938afdac03e fbb907ad71d4efca9f5682cba067965a {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02214.WGS.T C3L-02214 CCRCC WGS tumor CPT0127920006 CPT0127920006.WholeGenome.RP-1303.bam 59554586201 BAM submitted_aligned CPTAC3 0e022492-2a9a-4c8a-b3f6-dc57d75bbe91 537ba15148011f28f05476fdd7d179a4 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.WGS.T.hg38 C3L-02214 CCRCC WGS tumor CPT0127920006 df9996d0-814d-4c19-b91c-846deae126b5_wgs_gdc_realn.bam 86164660182 BAM harmonized CPTAC3 968ffad8-2773-464e-a8dd-4a5a29acaee4 617d84547f4630369a3398e816929c25 {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.WXS.N C3L-02214 CCRCC WXS blood_normal CPT0126590002 CPT0126590002.WholeExome.RP-1303.bam 17590894260 BAM submitted_aligned CPTAC3 9f939d63-6b1a-4e0c-88b8-7319cc7078a1 b4b546a3aac8732cd741b905f0883d2e {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02214.WXS.N.hg38 C3L-02214 CCRCC WXS blood_normal CPT0126590002 a85adbcf-2937-4743-b96c-fc696acc8ebf_wxs_gdc_realn.bam 24474931843 BAM harmonized CPTAC3 d62303b7-e1db-4955-83f4-22d927039cdf 91690fe80f393d5623d0b2eaa2d8e850 {"aliquot_tag": "ALQ_9d9aeb27", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02214.WXS.T C3L-02214 CCRCC WXS tumor CPT0127920006 CPT0127920006.WholeExome.RP-1303.bam 34506831591 BAM submitted_aligned CPTAC3 4b13cd62-8b80-4607-8852-d13095e2634e dd9791daf4b293eea47463111453200f {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02214.WXS.T.hg38 C3L-02214 CCRCC WXS tumor CPT0127920006 df9996d0-814d-4c19-b91c-846deae126b5_wxs_gdc_realn.bam 46462401526 BAM harmonized CPTAC3 2804f328-10a1-4e44-8e63-aa74e59de2bc be6462c89025c6e22ce4b2cb64752afb {"aliquot_tag": "ALQ_3c92d5e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02216.MethArray.Green.T C3L-02216 UCEC Methylation_Array tumor CPT0104690009 202234380017_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4cb6da06-913f-49b5-96ef-e7ecb090c01c 16bac713d253e1d40476d01799670b1e {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.MethArray.Red.T C3L-02216 UCEC Methylation_Array tumor CPT0104690009 202234380017_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 386a0b84-e09c-4937-9f84-dde7d1f77fff b4b6d0b50e1d2d00faaa1733ae551a26 {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.miRNA-Seq.A.hg38 C3L-02216 UCEC miRNA-Seq tissue_normal CPT0104710009 5c12af7e-e45b-42c2-8ffa-d6dfb6709d23_mirnaseq_gdc_realn.bam 296938274 BAM harmonized CPTAC3 6b2357c7-284c-4691-a833-617228a5ae68 1f35c8b96ad0963e85855af93668bc94 {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.miRNA-Seq.S23_L005_R1.A C3L-02216 UCEC miRNA-Seq tissue_normal CPT0104710009 181113_UNC31-K00269_0164_AH23NNBBXY_TCGAAG_S23_L005_R1_001.unaln.bam 260386893 BAM S23_L005_R1 submitted_unaligned CPTAC3 2cf1fc27-61e6-42b4-809c-6ce9fba1f400 48397a4aa0d8b36b2b420a760debb097 {"aliquot_tag": "ALQ_a24ace31", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.miRNA-Seq.S40_L007_R1.T C3L-02216 UCEC miRNA-Seq tumor CPT0104690006 181108_UNC31-K00269_0163_BH23TVBBXY_CTCAGA_S40_L007_R1_001.unaln.bam 185906214 BAM S40_L007_R1 submitted_unaligned CPTAC3 e1f69030-7b09-45cc-a6a5-106a8bc2fce7 78f70cd059bb55cb02df69e46a7ee93a {"aliquot_tag": "ALQ_c9d94bc4", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.miRNA-Seq.T.hg38 C3L-02216 UCEC miRNA-Seq tumor CPT0104690006 1081ae81-bb4b-419a-bd10-a587c0bc4e99_mirnaseq_gdc_realn.bam 204233064 BAM harmonized CPTAC3 1003c656-d8b3-42da-9270-67c05593bf01 1d87d21f82ad5df8af21d598dd56365a {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.RNA-Seq.chimeric.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.chimeric.gdc_realn.bam 42350640 BAM chimeric harmonized CPTAC3 a68f339b-6cde-4b1b-b096-9eb977980cca 6063d493c5f268dc0c1aa05b75eafb53 {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.RNA-Seq.chimeric.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.chimeric.gdc_realn.bam 30419770 BAM chimeric harmonized CPTAC3 06a878af-4a7c-4ff5-a39d-ef66a89f2f4c d6f866de53619d119ad1626427ec1b4f {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.RNA-Seq.genomic.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.genomic.gdc_realn.bam 9777421099 BAM genomic harmonized CPTAC3 0a062262-e8c6-4b32-b73a-a231898730e5 ecd653fe6543196d74907c0cf2e3a34f {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.RNA-Seq.genomic.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.genomic.gdc_realn.bam 8799924259 BAM genomic harmonized CPTAC3 46fc3060-f6aa-4436-8294-af2b35edcd43 3b412fe7ac8d1bae91a36b5458d4b909 {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.RNA-Seq.S12_L004_R1.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4205289055 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 a3b7d606-ff64-418d-b95f-74010da8202e b557f610cdd95c9619d1b8f7930c4ac8 {"aliquot_tag": "ALQ_a24ace31", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.RNA-Seq.S12_L004_R2.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4579121509 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 33a70dd5-22ca-4d04-a209-1bfd724a113c c2c7d2b4c6e007e853fbeeaa7ba351e0 {"aliquot_tag": "ALQ_a24ace31", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.RNA-Seq.S22_L006_R1.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4204635447 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 05dbfd5a-a757-41dd-841e-7e47058cd397 2f6a37ab942f03b12e9c13a7e35d5915 {"aliquot_tag": "ALQ_c9d94bc4", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.RNA-Seq.S22_L006_R2.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4693675998 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 7b873d63-5837-4ecc-9b74-ba55e5591189 d736a4d139710cd38e2bffda346a0c16 {"aliquot_tag": "ALQ_c9d94bc4", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.RNA-Seq.transcriptome.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.transcriptome.gdc_realn.bam 11598916487 BAM transcriptome harmonized CPTAC3 68166715-22bc-4a6b-ac82-eb43536f22d8 30117977bd3f7ad1a786ca008a2921c3 {"aliquot_tag": "ALQ_a24ace31", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.RNA-Seq.transcriptome.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.transcriptome.gdc_realn.bam 11570462527 BAM transcriptome harmonized CPTAC3 de65d58a-6d85-4a59-ba06-d1fb48c2ff59 64368ee39212ddc0f71bc516050a7b99 {"aliquot_tag": "ALQ_c9d94bc4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.WGS.A C3L-02216 UCEC WGS tissue_normal CPT0104710006 CPT0104710006.WholeGenome.RP-1303.bam 61403252971 BAM submitted_aligned CPTAC3 1cc2a9b7-954b-42e6-ad60-0c8facc97bce 9d13319562108fda821f8ec8346b22c9 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.WGS.A.hg38 C3L-02216 UCEC WGS tissue_normal CPT0104710006 9219b702-e723-4d6a-b2a3-a09dbd583c05_wgs_gdc_realn.bam 90050451261 BAM harmonized CPTAC3 a1b49a9a-fa41-4f34-adc9-943ec4d86a98 0e6c9b8aed869e747c49700503e703d5 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.WGS.N C3L-02216 UCEC WGS blood_normal CPT0105150002 CPT0105150002.WholeGenome.RP-1303.bam 71976253545 BAM submitted_aligned CPTAC3 315ac510-9294-4a95-9e8a-4054f577eafe 821709fc31648f6217898243007cd045 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02216.WGS.N.hg38 C3L-02216 UCEC WGS blood_normal CPT0105150002 c80497f4-88bd-4256-a557-cae11b6ed74d_wgs_gdc_realn.bam 106355350643 BAM harmonized CPTAC3 79cd477f-43f4-4a0d-b6a1-6699af5a97b0 f23fb52ec2a650d58cbc15445c869400 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02216.WGS.T C3L-02216 UCEC WGS tumor CPT0104690009 CPT0104690009.WholeGenome.RP-1303.bam 65079705300 BAM submitted_aligned CPTAC3 4c0a5602-cee2-4e1e-9332-2f7acec93710 ce27987979f66f149775b26e0dec31ec {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.WGS.T.hg38 C3L-02216 UCEC WGS tumor CPT0104690009 79ceb6e6-77e8-4ca0-bd3f-53f466ebec94_wgs_gdc_realn.bam 97420934186 BAM harmonized CPTAC3 085259e0-a8e3-4120-97c6-e8da430ebc49 9e4c69200dca954c740cfcdb175c0084 {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.WXS.A C3L-02216 UCEC WXS tissue_normal CPT0104710006 CPT0104710006.WholeExome.RP-1303.bam 38988191398 BAM submitted_aligned CPTAC3 f78d1447-a641-4dbe-8562-8201944e8430 2ee40d9356c2cf559e07e68a4a2521a5 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.WXS.A.hg38 C3L-02216 UCEC WXS tissue_normal CPT0104710006 9219b702-e723-4d6a-b2a3-a09dbd583c05_wxs_gdc_realn.bam 51695909384 BAM harmonized CPTAC3 4572539a-54d2-4a98-947e-cb0a86a22cf8 910db3e4acac4d490fcedf8bbb96c721 {"aliquot_tag": "ALQ_32f5d3a0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02216.WXS.N C3L-02216 UCEC WXS blood_normal CPT0105150002 CPT0105150002.WholeExome.RP-1303.bam 27420052446 BAM submitted_aligned CPTAC3 b35a14a3-460c-487e-bf52-9b4eb47cb1d3 f7b091caf57b7713a4bb3b92066579a9 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02216.WXS.N.hg38 C3L-02216 UCEC WXS blood_normal CPT0105150002 c80497f4-88bd-4256-a557-cae11b6ed74d_wxs_gdc_realn.bam 37787251761 BAM harmonized CPTAC3 7a28f467-24d1-4eb4-ba72-e06010cbe706 edb70cd0d6056eca482fe072bc25bc26 {"aliquot_tag": "ALQ_b03659d0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02216.WXS.T C3L-02216 UCEC WXS tumor CPT0104690009 CPT0104690009.WholeExome.RP-1303.bam 25148395604 BAM submitted_aligned CPTAC3 be638e78-7fc5-481d-ba3c-229a8245354b 339a197b362eea5604c3d5add54dce8d {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02216.WXS.T.hg38 C3L-02216 UCEC WXS tumor CPT0104690009 79ceb6e6-77e8-4ca0-bd3f-53f466ebec94_wxs_gdc_realn.bam 34795744446 BAM harmonized CPTAC3 72d192c6-0504-4022-9e1e-fc2f08b42d50 91411d14cf288210d27dd4bf88ff8f5e {"aliquot_tag": "ALQ_59665655", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02219.MethArray.Green.A C3L-02219 LUAD Methylation_Array tissue_normal CPT0104650009 203027390081_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fd9a28af-c262-4215-ab7c-147bdcfdab24 ebe788969e7054afbe44e30144ebb7e4 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.MethArray.Green.T C3L-02219 LUAD Methylation_Array tumor CPT0104630009 202234380017_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b9a45765-98b5-497f-8c36-7d015319f6a6 03472148c57edebdec00bff3a31ff0f5 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.MethArray.Red.A C3L-02219 LUAD Methylation_Array tissue_normal CPT0104650009 203027390081_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 12674588-9281-41e4-8f08-3939415708bf d21ab9f1502edad314dfe57468efecbb {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.MethArray.Red.T C3L-02219 LUAD Methylation_Array tumor CPT0104630009 202234380017_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 627077ce-6238-4dbe-a598-ae4c5c14bcbc 2b17e72192f03414165e05254464d5e7 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.miRNA-Seq.A.hg38 C3L-02219 LUAD miRNA-Seq tissue_normal CPT0104650006 42cf9f05-cbcc-4d88-ab26-f2cbe8de7dd1_mirnaseq_gdc_realn.bam 276379458 BAM harmonized CPTAC3 8256191d-595f-47d0-b6e3-5c0180bcb6ca 6e9ae191f052b7b417838a4f6ea2d789 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.miRNA-Seq.S12_L007_R1.A C3L-02219 LUAD miRNA-Seq tissue_normal CPT0104650006 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L007_R1_001.unaln.bam 251162438 BAM S12_L007_R1 submitted_unaligned CPTAC3 efae2be6-0b82-4f54-a540-0d0c680ddeac 84ed7851bd9b9cd0921168235bd7bf3b {"aliquot_tag": "ALQ_c29a6c5", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.miRNA-Seq.S39_L007_R1.T C3L-02219 LUAD miRNA-Seq tumor CPT0104630006 181108_UNC31-K00269_0163_BH23TVBBXY_CTATAC_S39_L007_R1_001.unaln.bam 234737796 BAM S39_L007_R1 submitted_unaligned CPTAC3 75aa3203-309e-4532-ba33-88a3c13df721 f0ac4734e099739571ab11570674a7de {"aliquot_tag": "ALQ_83695365", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.miRNA-Seq.T.hg38 C3L-02219 LUAD miRNA-Seq tumor CPT0104630006 9629c530-8c91-48de-8852-c06a2fc12eb0_mirnaseq_gdc_realn.bam 256916755 BAM harmonized CPTAC3 1cf39c8e-381b-4945-bf56-4e3f16d7c0da e8e81a845c3eb858262e1a092f875fae {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.RNA-Seq.chimeric.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.chimeric.gdc_realn.bam 83388847 BAM chimeric harmonized CPTAC3 1352afa7-a6a9-4365-812a-c0624c843527 4977e956cb172761b5f47436e9df2712 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.RNA-Seq.chimeric.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.chimeric.gdc_realn.bam 34519023 BAM chimeric harmonized CPTAC3 38ed323a-5c0a-40df-96a5-56e6f6cfe110 941f5a5f9ef4fa9fc342dbcc27168e63 {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.RNA-Seq.genomic.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.genomic.gdc_realn.bam 8460656998 BAM genomic harmonized CPTAC3 bd0bdd4c-20c4-420b-aa7f-79fd33abba3a e60e793c7f2e256de08665e369733bc9 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.RNA-Seq.genomic.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.genomic.gdc_realn.bam 8665283399 BAM genomic harmonized CPTAC3 c2b1bb9d-65fd-4568-b6de-cc01a74a0c50 3a60a3a89d7f52c853f68f3c941928c6 {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.RNA-Seq.S11_L003_R1.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R1_001.fastq.gz 4090146805 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 ade14353-6a49-415f-adee-3ee3ace2433a b443017477dc3c0849e2f0c3103b8776 {"aliquot_tag": "ALQ_c29a6c5", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.RNA-Seq.S11_L003_R2.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R2_001.fastq.gz 4521366772 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 bf847923-a173-4bd4-a150-7fdd5b7436da 4689e23407b86d281ff0f4c24d633ba1 {"aliquot_tag": "ALQ_c29a6c5", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.RNA-Seq.S19_L006_R1.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R1_001.fastq.gz 3890348910 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 5f11ff6e-478d-4f11-9736-0db21ae7280b 698fc92260ac4fca4e84665fde1c1017 {"aliquot_tag": "ALQ_83695365", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.RNA-Seq.S19_L006_R2.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R2_001.fastq.gz 4346562848 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 ff174056-89d3-47c0-a676-33b2d1ffd271 dbbc089cc51084b460fcd397d3d46d9c {"aliquot_tag": "ALQ_83695365", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.RNA-Seq.transcriptome.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.transcriptome.gdc_realn.bam 10678865204 BAM transcriptome harmonized CPTAC3 11883439-c187-48c9-baf3-2f67d1183b5a 0a8f540283dc1bcdd8bf6454d8260490 {"aliquot_tag": "ALQ_c29a6c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.RNA-Seq.transcriptome.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.transcriptome.gdc_realn.bam 11436062083 BAM transcriptome harmonized CPTAC3 37747f50-d6ee-4d80-a759-c6e38c1c024f 6261d71b0958c65f0a6177c28ee9931f {"aliquot_tag": "ALQ_83695365", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.WGS.A C3L-02219 LUAD WGS tissue_normal CPT0104650009 CPT0104650009.WholeGenome.RP-1303.bam 52067264142 BAM submitted_aligned CPTAC3 52073d5c-cb9a-4373-9aa6-b3a7fbfc0462 35c5a740e9d799e6dd3a90672fcedf26 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.WGS.A.hg38 C3L-02219 LUAD WGS tissue_normal CPT0104650009 2fe74fe3-b44f-4d4d-82a6-4ac00f46f343_wgs_gdc_realn.bam 76774603020 BAM harmonized CPTAC3 82cc2a5c-81a3-4e1f-93cc-f61d7d5c9b51 48fb04a239161cff4f5d98876f2d5c32 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.WGS.N C3L-02219 LUAD WGS blood_normal CPT0105160002 CPT0105160002.WholeGenome.RP-1303.bam 57842864379 BAM submitted_aligned CPTAC3 d2602466-8cf1-4865-8fe1-724efd5ff9c7 1b6e30fb1752cd4f9f83d684da79b8f7 {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02219.WGS.N.hg38 C3L-02219 LUAD WGS blood_normal CPT0105160002 fa479329-731f-43cb-aaa8-35851c12da27_wgs_gdc_realn.bam 83611601754 BAM harmonized CPTAC3 ee4383ce-637e-4d79-9f75-34de05a2e0ec 6fa9e2cdf35a07424c5dcf2ebcfad11b {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02219.WGS.T C3L-02219 LUAD WGS tumor CPT0104630009 CPT0104630009.WholeGenome.RP-1303.bam 58538313724 BAM submitted_aligned CPTAC3 0057c98f-a45b-4fb0-bbcc-752ac2661866 ad0b9cf0abca85f5a8424f836db41473 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.WGS.T.hg38 C3L-02219 LUAD WGS tumor CPT0104630009 8c0016cb-0881-4ed7-b781-e1ec7987cd27_wgs_gdc_realn.bam 86521817753 BAM harmonized CPTAC3 9e38d9d5-190e-4ba9-a4f1-e2d66f600b46 0f2919d08345fa329fcd517260d1a540 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.WXS.A C3L-02219 LUAD WXS tissue_normal CPT0104650009 CPT0104650009.WholeExome.RP-1303.bam 37594449150 BAM submitted_aligned CPTAC3 8d21acfb-b7bc-42ee-85ca-240ff1381cf1 70407173c75ed7e1cea0248c94647c20 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.WXS.A.hg38 C3L-02219 LUAD WXS tissue_normal CPT0104650009 2fe74fe3-b44f-4d4d-82a6-4ac00f46f343_wxs_gdc_realn.bam 50835644500 BAM harmonized CPTAC3 5ec63922-4ede-4a8b-804c-20d76141152c d25a399310a88cd8644bb9b48ea78898 {"aliquot_tag": "ALQ_9c96bb54", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02219.WXS.N C3L-02219 LUAD WXS blood_normal CPT0105160002 CPT0105160002.WholeExome.RP-1303.bam 37938843499 BAM submitted_aligned CPTAC3 77999388-54b2-4ce0-ba21-70bbab90caa0 c810f8beecdd780c84700c492f9c17db {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02219.WXS.N.hg38 C3L-02219 LUAD WXS blood_normal CPT0105160002 fa479329-731f-43cb-aaa8-35851c12da27_wxs_gdc_realn.bam 51052207833 BAM harmonized CPTAC3 957524de-e064-45b2-b7e4-21afff187be1 24ca38621a6745190f8f1ae2d15bd596 {"aliquot_tag": "ALQ_f7962300", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02219.WXS.T C3L-02219 LUAD WXS tumor CPT0104630009 CPT0104630009.WholeExome.RP-1303.bam 29623651893 BAM submitted_aligned CPTAC3 f7c46413-e306-431e-8ff1-67951c20905a 8fdbe4c0bc86d4f40aec27d09258711a {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02219.WXS.T.hg38 C3L-02219 LUAD WXS tumor CPT0104630009 8c0016cb-0881-4ed7-b781-e1ec7987cd27_wxs_gdc_realn.bam 41436630663 BAM harmonized CPTAC3 e6421728-d85a-488a-ac5a-66b304de7588 2358153c19ca95f51c7dec749e1d7e45 {"aliquot_tag": "ALQ_13d64ef4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.MethArray.Green.A C3L-02220 CCRCC Methylation_Array tissue_normal CPT0104580006 204373100047_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 04a68068-32d8-40a9-8b9d-9403ef102474 a604fc3670b4f84fd23d4ec9f563eced {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.MethArray.Green.T C3L-02220 CCRCC Methylation_Array tumor CPT0104550009 202234380064_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b3d128f-eceb-445a-a21a-96c699dee35b 35d7a06fe808aee7844dffb759446e4d {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.MethArray.Red.A C3L-02220 CCRCC Methylation_Array tissue_normal CPT0104580006 204373100047_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 57dfc966-01f5-49ef-b4cb-70d56a1138e9 0fece859d5e9fe2d5da265f0e309fc5b {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.MethArray.Red.T C3L-02220 CCRCC Methylation_Array tumor CPT0104550009 202234380064_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 5ebc7209-59ed-4529-bbc9-559f31974934 9f0af6eaab8a9d4596f52b56a41eeb94 {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.miRNA-Seq.S38_L007_R1.T C3L-02220 CCRCC miRNA-Seq tumor CPT0104550006 181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L007_R1_001.unaln.bam 286705573 BAM S38_L007_R1 submitted_unaligned CPTAC3 93286439-f23d-4270-830a-c6ce55c2b26c c769242c49e917351f559a1942b4f41f {"aliquot_tag": "ALQ_8abdd46b", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.miRNA-Seq.T.hg38 C3L-02220 CCRCC miRNA-Seq tumor CPT0104550006 1084d604-caa5-4799-9b3a-3eb2b9cd7959_mirnaseq_gdc_realn.bam 315711123 BAM harmonized CPTAC3 13e804e0-810c-4c54-8b20-e0ff18f5ba7d e9378103d2e7679b2582df68a2096b94 {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.RNA-Seq.chimeric.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.chimeric.gdc_realn.bam 21410300 BAM chimeric harmonized CPTAC3 fc99ab3a-f985-4f62-b6ec-9a71e73ff191 01f01da56f5ac7cdb2717e67c2081d54 {"aliquot_tag": "ALQ_e2920d4b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.RNA-Seq.chimeric.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.chimeric.gdc_realn.bam 38246344 BAM chimeric harmonized CPTAC3 49d11ccd-6db1-48bf-814d-e4513122f8a9 2c8cc3d9bc2d46883046801f7f033f32 {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.RNA-Seq.genomic.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.genomic.gdc_realn.bam 6880264495 BAM genomic harmonized CPTAC3 e0496c94-cfe5-47c9-9363-7fecabbc9da9 c5d39a010436c988730457c8c2813e70 {"aliquot_tag": "ALQ_e2920d4b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.RNA-Seq.genomic.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.genomic.gdc_realn.bam 8322379383 BAM genomic harmonized CPTAC3 e79fd7c7-414d-4f87-bc2a-bcea68707013 16e3081ef890a0834282d709fa77abda {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.RNA-Seq.S4_L007_R1.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3921696675 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 bcf85c94-d8cd-46ff-a2df-161588ca1f6f f62a18d22f922c9385b131f65bc87ad8 {"aliquot_tag": "ALQ_8abdd46b", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.RNA-Seq.S4_L007_R2.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4244846603 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 f6afce03-6c2f-4991-aea2-79eed1c82fd7 4cd4c9a0fae3da102ed1ee40af2ee494 {"aliquot_tag": "ALQ_8abdd46b", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.RNA-Seq.S7_L008_R1.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 3177019934 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 7ba1a462-a098-4878-be3d-d1cbab10a167 8d1606e5aaf7ef3dbf0b77aa4eeab671 {"aliquot_tag": "ALQ_e2920d4b", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.RNA-Seq.S7_L008_R2.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 3303631613 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 5a913799-c4f1-45e8-af63-51b364415df8 4f542ff029c8a74d1a3280855ee6317b {"aliquot_tag": "ALQ_e2920d4b", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.RNA-Seq.transcriptome.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.transcriptome.gdc_realn.bam 8488730235 BAM transcriptome harmonized CPTAC3 acd5b40e-d96b-4af2-b13c-118c3087c9ae b65682fb93c1de19c106344f831986d4 {"aliquot_tag": "ALQ_e2920d4b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.RNA-Seq.transcriptome.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.transcriptome.gdc_realn.bam 11097893266 BAM transcriptome harmonized CPTAC3 66609ef9-a3db-4629-b211-a5c6606e6fa9 49a45a4af76217103b7e8952dcf07baf {"aliquot_tag": "ALQ_8abdd46b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.WGS.A C3L-02220 CCRCC WGS tissue_normal CPT0104580006 CPT0104580006.WholeGenome.RP-1303.bam 55760920782 BAM submitted_aligned CPTAC3 ec8748b9-900d-457b-83e7-c770de641352 318ddff9fd1f039c9a33a0b0e648e4c7 {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.WGS.A.hg38 C3L-02220 CCRCC WGS tissue_normal CPT0104580006 71c5938f-6621-4252-9c6a-801c3dab59ac_wgs_gdc_realn.bam 81111833299 BAM harmonized CPTAC3 5efdda70-d11d-47ae-a064-4a1ec1ee8375 37c4bab192c04a4f4e6af7b92f4a214c {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.WGS.N C3L-02220 CCRCC WGS blood_normal CPT0105170002 CPT0105170002.WholeGenome.RP-1303.bam 62143636160 BAM submitted_aligned CPTAC3 d7d9af3c-d7e6-48d9-9afc-61a4efa24d97 c2e0ad9c96c9bade3a7c2568fddf7f18 {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02220.WGS.N.hg38 C3L-02220 CCRCC WGS blood_normal CPT0105170002 cf340692-0b4f-4388-91af-ee6435c00602_wgs_gdc_realn.bam 89254636188 BAM harmonized CPTAC3 bef45cad-7f41-43d4-91b2-77a5184fce36 d07dd89e9e43766965a66f5fec7152ef {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02220.WGS.T C3L-02220 CCRCC WGS tumor CPT0104550009 CPT0104550009.WholeGenome.RP-1303.bam 66990668181 BAM submitted_aligned CPTAC3 e931e081-6efd-4cd5-aa91-597473b72108 4e0376205ba7b02ae2b29507a3b4808b {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.WGS.T.hg38 C3L-02220 CCRCC WGS tumor CPT0104550009 06cc347e-536f-40fe-96dd-799cdedecbf5_wgs_gdc_realn.bam 98821699573 BAM harmonized CPTAC3 9954f25a-04c2-4ec9-80da-ae65c30587e4 9b30d701a118e89e897842ccd091002e {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.WXS.A C3L-02220 CCRCC WXS tissue_normal CPT0104580006 CPT0104580006.WholeExome.RP-1303.bam 24959408651 BAM submitted_aligned CPTAC3 034caead-e039-429f-acdf-8a3f269bf98d 1623189ae13958cac2fc6fda09c0d1a6 {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.WXS.A.hg38 C3L-02220 CCRCC WXS tissue_normal CPT0104580006 71c5938f-6621-4252-9c6a-801c3dab59ac_wxs_gdc_realn.bam 33358913547 BAM harmonized CPTAC3 b9182210-2e93-493b-974c-a98dd53d36fc 3b0ea25012e09ad016c7f15d97acbc0a {"aliquot_tag": "ALQ_722d10da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02220.WXS.N C3L-02220 CCRCC WXS blood_normal CPT0105170002 CPT0105170002.WholeExome.RP-1303.bam 26317093177 BAM submitted_aligned CPTAC3 6dc2a824-e439-43a1-a2ba-61640813b41d d757ff15fb7742babd163c8370c8e033 {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02220.WXS.N.hg38 C3L-02220 CCRCC WXS blood_normal CPT0105170002 cf340692-0b4f-4388-91af-ee6435c00602_wxs_gdc_realn.bam 36637620689 BAM harmonized CPTAC3 b4be1a54-5d63-4f29-bc5d-473db4987da6 fb9deddec8b79d643f3e656c11be92de {"aliquot_tag": "ALQ_caf60ab0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02220.WXS.T C3L-02220 CCRCC WXS tumor CPT0104550009 CPT0104550009.WholeExome.RP-1303.bam 37096571797 BAM submitted_aligned CPTAC3 45de3406-0def-46fe-8d27-ba2671ea2665 f696885ba5cb0e9909efbc7630cf51d4 {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02220.WXS.T.hg38 C3L-02220 CCRCC WXS tumor CPT0104550009 06cc347e-536f-40fe-96dd-799cdedecbf5_wxs_gdc_realn.bam 51462620045 BAM harmonized CPTAC3 c7b0b45e-09b1-4921-8e24-918ba56a333b 2099754cfeed5d90c98ff81acf468949 {"aliquot_tag": "ALQ_1a02c9fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.MethArray.Green.A C3L-02345 LUAD Methylation_Array tissue_normal CPT0114010009 203028200014_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cd516f95-c131-47d6-9559-6713d01d0d37 d4175b03e756b0b453aef0970016ac60 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.MethArray.Green.T C3L-02345 LUAD Methylation_Array tumor CPT0113990009 202234380051_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 baf7b6b8-bb5f-4b79-90ab-514e0b93ceee 97522eaf6c2cfe1ef45754b94b371035 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.MethArray.Red.A C3L-02345 LUAD Methylation_Array tissue_normal CPT0114010009 203028200014_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 346580ca-aa68-43f8-9aa6-6839b20fd97e e80e26643224735166ffabcb105d5ed2 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.MethArray.Red.T C3L-02345 LUAD Methylation_Array tumor CPT0113990009 202234380051_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 f5884947-f565-4847-8139-3b82f5660e3a 4aae7331c9a5ebcb6ba88f685db0a666 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.miRNA-Seq.A.hg38 C3L-02345 LUAD miRNA-Seq tissue_normal CPT0114010006 72d4f312-7a7b-4573-9d24-cd0c6251971a_mirnaseq_gdc_realn.bam 262862798 BAM harmonized CPTAC3 ec613603-14db-468e-b174-90db1fc4fce5 c65094703b7518c2cad53331ed31385f {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.miRNA-Seq.S21_L005_R1.A C3L-02345 LUAD miRNA-Seq tissue_normal CPT0114010006 181108_UNC31-K00269_0162_AH255GBBXY_TCATTC_S21_L005_R1_001.unaln.bam 239631758 BAM S21_L005_R1 submitted_unaligned CPTAC3 5836abfa-b9b9-48ca-8c7d-85e3b0ffbc72 32bedfcf2c7ce518e647c6fb19f0c331 {"aliquot_tag": "ALQ_e35ae386", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.miRNA-Seq.S38_L002_R1.T C3L-02345 LUAD miRNA-Seq tumor CPT0113990006 181113_UNC31-K00269_0164_AH23NNBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 230688650 BAM S38_L002_R1 submitted_unaligned CPTAC3 9341578f-70ce-4b41-b6da-adb9ffad8c04 babaffa36a27af94f331ae18af08986b {"aliquot_tag": "ALQ_3182c701", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.miRNA-Seq.T.hg38 C3L-02345 LUAD miRNA-Seq tumor CPT0113990006 3b62abff-f151-4c11-8341-53d075051a91_mirnaseq_gdc_realn.bam 248342070 BAM harmonized CPTAC3 beb8999d-e551-4688-b0fd-37cc3ee2c956 920b76bda9d37d25df805bb506035121 {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.RNA-Seq.chimeric.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.chimeric.gdc_realn.bam 119309372 BAM chimeric harmonized CPTAC3 295f10b2-ae58-4c1e-8a3f-60bc6718aac5 585fad29daf1c51370300a6f34a6ffc7 {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.RNA-Seq.chimeric.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.chimeric.gdc_realn.bam 135668710 BAM chimeric harmonized CPTAC3 10bd35ac-2a1e-4352-b2e5-3e77a30bfb77 bb6f2e9bfe7056f10f8dca398291ea1a {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.RNA-Seq.genomic.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.genomic.gdc_realn.bam 7702618161 BAM genomic harmonized CPTAC3 61a913d0-b4e3-440b-90d7-45586fc02d12 812df53a81fe331a58c4821a3ad18dad {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.RNA-Seq.genomic.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.genomic.gdc_realn.bam 8106143150 BAM genomic harmonized CPTAC3 3e4af998-5fa3-43f9-a24b-025b3a08fb63 e0f08afc05c4a1e60cbc5c1a6868f05e {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.RNA-Seq.S2_L001_R1.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3581676275 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 72afe5df-b108-4ec1-abf7-bc8e471dbce4 295305975f492b73c8c31797250b8249 {"aliquot_tag": "ALQ_e35ae386", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.RNA-Seq.S2_L001_R2.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4028831044 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 6df3b6f1-b54b-4aee-94d5-996948338a45 c62af4b6423c1c65c1159f2e8af38eaf {"aliquot_tag": "ALQ_e35ae386", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.RNA-Seq.S8_L003_R1.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R1_001.fastq.gz 3619231221 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 49cbf08a-6e13-47bf-a3b3-775ef3c32be9 9bca6b528a6f3065b3f9c47b7ec7dfc4 {"aliquot_tag": "ALQ_3182c701", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.RNA-Seq.S8_L003_R2.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R2_001.fastq.gz 3665965485 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 b40810ac-c2d7-4c0d-b35d-f8f3d778d334 134be0dbaed39fff836abb4292c3ddef {"aliquot_tag": "ALQ_3182c701", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.RNA-Seq.transcriptome.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.transcriptome.gdc_realn.bam 8905669244 BAM transcriptome harmonized CPTAC3 fa992c18-e377-4ff3-9af6-a540b0c2c11c 1b5b65f30fa05cb235650560e057d1cd {"aliquot_tag": "ALQ_e35ae386", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.RNA-Seq.transcriptome.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.transcriptome.gdc_realn.bam 9305233421 BAM transcriptome harmonized CPTAC3 36c6c4c4-9fbc-45d1-88d7-77ef29fbc394 3e95ccb0001265c7a6f18a75aecbea2b {"aliquot_tag": "ALQ_3182c701", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.WGS.A C3L-02345 LUAD WGS tissue_normal CPT0114010009 CPT0114010009.WholeGenome.RP-1303.bam 58094166787 BAM submitted_aligned CPTAC3 5e2afbdd-0ad1-48cb-afb3-75758ae06817 7be94ff4029ec8e50c5ee1ddd9165f66 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.WGS.A.hg38 C3L-02345 LUAD WGS tissue_normal CPT0114010009 a3d69712-233d-44be-9250-d34413b0a823_wgs_gdc_realn.bam 83937489404 BAM harmonized CPTAC3 a9910513-7dfa-45a3-8463-76a51c98f422 9c0149a837148f433f5132d7e3c835d8 {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.WGS.N C3L-02345 LUAD WGS blood_normal CPT0115310002 CPT0115310002.WholeGenome.RP-1303.bam 59721312039 BAM submitted_aligned CPTAC3 1e266d1b-c7ee-421c-bfb1-9acc61252d84 f2cff7e30f89e10130c075a2e4f664ba {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02345.WGS.N.hg38 C3L-02345 LUAD WGS blood_normal CPT0115310002 731f2bed-8215-40fc-a04f-4e73f526767c_wgs_gdc_realn.bam 87160440093 BAM harmonized CPTAC3 0093e67c-d2e2-4fbb-a121-d20689aa2a9a 1f630b4f53bc8ee397c94804d734ba3d {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02345.WGS.T C3L-02345 LUAD WGS tumor CPT0113990009 CPT0113990009.WholeGenome.RP-1303.bam 66386425474 BAM submitted_aligned CPTAC3 9b05a2d2-dca2-45fb-afac-ab194aa3c137 b6f792434a8156ab8f8f63daf4081e0b {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.WGS.T.hg38 C3L-02345 LUAD WGS tumor CPT0113990009 2ff27509-55ea-48db-9380-41a440e2cf4d_wgs_gdc_realn.bam 97275199158 BAM harmonized CPTAC3 203f456c-37c9-4ef0-a3bf-87294f00ea80 e09ba6569cdd92dd3f96f3901f1937c0 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.WXS.A C3L-02345 LUAD WXS tissue_normal CPT0114010009 CPT0114010009.WholeExome.RP-1303.bam 28684734858 BAM submitted_aligned CPTAC3 ad0f6646-93ce-47ef-816c-379d0f40c830 b449e93a23fa54625499d7ec3491e94a {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.WXS.A.hg38 C3L-02345 LUAD WXS tissue_normal CPT0114010009 a3d69712-233d-44be-9250-d34413b0a823_wxs_gdc_realn.bam 38714457635 BAM harmonized CPTAC3 dd8f7685-e250-472e-9d73-58905e82d65d b777fc1cec607ebf9f64e5695c8b530b {"aliquot_tag": "ALQ_73e5fe17", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02345.WXS.N C3L-02345 LUAD WXS blood_normal CPT0115310002 CPT0115310002.WholeExome.RP-1303.bam 36794308485 BAM submitted_aligned CPTAC3 c8c4e9cb-8620-46ff-a2a2-0cf81f401f67 d1bb1b68664f4feb2d5469e4c0cce4e3 {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02345.WXS.N.hg38 C3L-02345 LUAD WXS blood_normal CPT0115310002 731f2bed-8215-40fc-a04f-4e73f526767c_wxs_gdc_realn.bam 49588501488 BAM harmonized CPTAC3 33015297-0979-437b-b923-816699c2cc83 6f0aea9b59de37e7b6d38b6724f7602c {"aliquot_tag": "ALQ_c4d45e85", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02345.WXS.T C3L-02345 LUAD WXS tumor CPT0113990009 CPT0113990009.WholeExome.RP-1303.bam 28398148639 BAM submitted_aligned CPTAC3 1b452276-f1ab-4e73-8204-776d3a08cbad b78b35c29d6a95c5dfb2491a4bd0cdaf {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02345.WXS.T.hg38 C3L-02345 LUAD WXS tumor CPT0113990009 2ff27509-55ea-48db-9380-41a440e2cf4d_wxs_gdc_realn.bam 38749221225 BAM harmonized CPTAC3 74c85236-3626-426a-8c3c-d0185c9520e7 1da3ab1026fdee86d763affe75f889b9 {"aliquot_tag": "ALQ_a13dda90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.MethArray.Green.A C3L-02346 CCRCC Methylation_Array tissue_normal CPT0112490006 204930630068_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f397812a-7612-4a1d-8949-162c2f3616f1 a73042e1f2dd0804a786ac4635f6b4ba {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.MethArray.Green.T C3L-02346 CCRCC Methylation_Array tumor CPT0112460009 203219650164_R04C01_Grn.idat 13676235 IDAT Green NA CPTAC3 bf925fd8-90a4-412e-bf96-b6380e460619 4d036b21069e227e4e8038493cf985d9 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.MethArray.Red.A C3L-02346 CCRCC Methylation_Array tissue_normal CPT0112490006 204930630068_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 f817cf6d-1f92-437f-bad4-87c371e7cebe db4a48140a49d83b7cfc8e2ef186e3eb {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.MethArray.Red.T C3L-02346 CCRCC Methylation_Array tumor CPT0112460009 203219650164_R04C01_Red.idat 13676235 IDAT Red NA CPTAC3 8e18f0a8-a7b3-413d-8ed1-1d419b8a4d78 67eba069119c741b06ec57ad09395770 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.miRNA-Seq.A.hg38 C3L-02346 CCRCC miRNA-Seq tissue_normal CPT0112490009 167d20d1-995b-45d0-83e0-c5377d9808a3_mirnaseq_gdc_realn.bam 198103894 BAM harmonized CPTAC3 c19f33cd-7ca9-4d05-bc25-f564a2bb1741 b99998b651c7a2413fb81a631078a73d {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.miRNA-Seq.S25_L003_R1.T C3L-02346 CCRCC miRNA-Seq tumor CPT0112460006 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTGAT_S25_L003_R1_001.unaln.bam 203845797 BAM S25_L003_R1 submitted_unaligned CPTAC3 7f936d30-83b0-48ab-811f-0780cc0ca49b 07ae4f0cecdad765b000a339fe45391b {"aliquot_tag": "ALQ_a93b48ba", "sample": "S25", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.miRNA-Seq.S4_L002_R1.A C3L-02346 CCRCC miRNA-Seq tissue_normal CPT0112490009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L002_R1_001.unaln.bam 180584877 BAM S4_L002_R1 submitted_unaligned CPTAC3 2ae3a967-66c2-4399-8ce4-fd7a69afba5c 6c053ce6bbea285e9781060d27846265 {"aliquot_tag": "ALQ_bbd4c2fa", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.miRNA-Seq.T.hg38 C3L-02346 CCRCC miRNA-Seq tumor CPT0112460006 d16758da-9b87-4f83-8eec-a29e7de059ae_mirnaseq_gdc_realn.bam 221614035 BAM harmonized CPTAC3 b2ce5c8e-5f62-4be0-b869-d88466f411ac 8ec98518bc6ea01817076b3b7dc92671 {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.RNA-Seq.chimeric.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.chimeric.gdc_realn.bam 410765802 BAM chimeric harmonized CPTAC3 1150f70a-c003-4caf-9c4e-ef42211a97e0 32a073897a07cb9a3be3dbdfd91116fe {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.RNA-Seq.chimeric.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.chimeric.gdc_realn.bam 32401491 BAM chimeric harmonized CPTAC3 87078763-9199-4a4f-bb4f-92fcaa852666 06b154e97b8a4a18ba661851883d0c8e {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.RNA-Seq.genomic.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.genomic.gdc_realn.bam 8978287215 BAM genomic harmonized CPTAC3 19b06212-dd4b-46a3-8555-4ac99dcf4a03 77f23bb7b1b35abe3047418e9bba58b1 {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.RNA-Seq.genomic.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.genomic.gdc_realn.bam 9290841032 BAM genomic harmonized CPTAC3 ccc8b5d8-cc91-4310-9656-227772f5f72d 6686a4eb5fd5881dc608d4fdc398bfd5 {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.RNA-Seq.S10_L003_R1.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 3928510648 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 d9df4270-b0b4-40bc-932e-8c9a3dcbbc41 497495e561b791df02265a3aebc2a4d6 {"aliquot_tag": "ALQ_bbd4c2fa", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.RNA-Seq.S10_L003_R2.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 4283208093 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 c6591498-9a3b-4295-a68c-59caa668a1c0 92148154984a810b45dd8fd74ee1cdf2 {"aliquot_tag": "ALQ_bbd4c2fa", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.RNA-Seq.S15_L004_R1.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4393155105 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 a64f3486-3e96-471d-a7f0-0ae1de264ffa d41735b398bd8cc59e7cd562e1057b70 {"aliquot_tag": "ALQ_a93b48ba", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.RNA-Seq.S15_L004_R2.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R2_001.fastq.gz 4274841978 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 efcd8633-213d-463c-a2d0-c4e7a360471e 7b401cb5cebef8b02b8b069363d5466e {"aliquot_tag": "ALQ_a93b48ba", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.RNA-Seq.transcriptome.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.transcriptome.gdc_realn.bam 8750372899 BAM transcriptome harmonized CPTAC3 2e7ccb92-2a62-4c9f-a95d-8ed45a64c9e9 8b856b88ddf01c6950bfe4cae59d869b {"aliquot_tag": "ALQ_bbd4c2fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.RNA-Seq.transcriptome.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.transcriptome.gdc_realn.bam 11881189889 BAM transcriptome harmonized CPTAC3 23bcd356-2e59-4201-b297-2b43812577a1 80710fe2e87f3488d570e6c92e3decef {"aliquot_tag": "ALQ_a93b48ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.WGS.A C3L-02346 CCRCC WGS tissue_normal CPT0112490006 CPT0112490006.WholeGenome.RP-1303.bam 51934510050 BAM submitted_aligned CPTAC3 22158af8-54b6-4764-89fe-0000f425e32f b7aa0bdc902bb7a76907e6bf97ed66d2 {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.WGS.A.hg38 C3L-02346 CCRCC WGS tissue_normal CPT0112490006 c5f3604a-5b18-4028-96a6-b61b37b4092d_wgs_gdc_realn.bam 76124597718 BAM harmonized CPTAC3 5008b1cd-a3c1-481c-831b-c16e758a8e53 dda60ec7b7c08c032f1710f6505ce70c {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.WGS.N C3L-02346 CCRCC WGS blood_normal CPT0115150002 CPT0115150002.WholeGenome.RP-1303.bam 64649297306 BAM submitted_aligned CPTAC3 9d262091-a8a8-4afe-9d06-30c41ac8cb69 0f4bb92f9129ce6f53469541622141e6 {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02346.WGS.N.hg38 C3L-02346 CCRCC WGS blood_normal CPT0115150002 b7aa8656-fd17-4c3b-ace0-9a27f91ae3b1_wgs_gdc_realn.bam 94322908755 BAM harmonized CPTAC3 7240eea8-e5fb-4f99-9313-1583e596e799 39955e0fec6a41d3d133f6cfb24f4272 {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02346.WGS.T C3L-02346 CCRCC WGS tumor CPT0112460009 CPT0112460009.WholeGenome.RP-1303.bam 50610305807 BAM submitted_aligned CPTAC3 b96c7cd1-1e82-49d5-9432-71ea09d9390e 3f8a2591f8f36207df665af6f572217b {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.WGS.T.hg38 C3L-02346 CCRCC WGS tumor CPT0112460009 d12b8af9-30a5-4d53-ac59-119e4ff49ab4_wgs_gdc_realn.bam 74149505767 BAM harmonized CPTAC3 41705a4e-87e0-408f-a4ce-a1a0a2194ee0 bd75ba362c0e1b594852c94983c761ab {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.WXS.A C3L-02346 CCRCC WXS tissue_normal CPT0112490006 CPT0112490006.WholeExome.RP-1303.bam 22832630678 BAM submitted_aligned CPTAC3 bcc0707b-66f8-4deb-b42f-7ecf5e9f9537 7ee1fd1682c56f479a639e34899441ad {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.WXS.A.hg38 C3L-02346 CCRCC WXS tissue_normal CPT0112490006 c5f3604a-5b18-4028-96a6-b61b37b4092d_wxs_gdc_realn.bam 31718219048 BAM harmonized CPTAC3 60b6e51d-75ff-42e0-9e04-19d6aab751fa f9b33a2655b1a3089280de4d94ae4bd9 {"aliquot_tag": "ALQ_2b6bdf6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02346.WXS.N C3L-02346 CCRCC WXS blood_normal CPT0115150002 CPT0115150002.WholeExome.RP-1303.bam 29084598116 BAM submitted_aligned CPTAC3 fd45d880-a8b0-43dc-abbb-27e2315a7caa e8a380c59ccdfabbb4728226d460afab {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02346.WXS.N.hg38 C3L-02346 CCRCC WXS blood_normal CPT0115150002 b7aa8656-fd17-4c3b-ace0-9a27f91ae3b1_wxs_gdc_realn.bam 39248361335 BAM harmonized CPTAC3 6c1d5538-0099-4a94-90b6-9fce3261af1b 4228911248d240b76e095615d9791dd2 {"aliquot_tag": "ALQ_7c9c594e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02346.WXS.T C3L-02346 CCRCC WXS tumor CPT0112460009 CPT0112460009.WholeExome.RP-1303.bam 23876759681 BAM submitted_aligned CPTAC3 8b013542-b1e0-45ec-88a7-2fd531080e08 eee82fad47ebb5443ec28c7ee946eb05 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02346.WXS.T.hg38 C3L-02346 CCRCC WXS tumor CPT0112460009 d12b8af9-30a5-4d53-ac59-119e4ff49ab4_wxs_gdc_realn.bam 32818937733 BAM harmonized CPTAC3 c627d967-a99c-485d-beaa-085568a44320 6f7b05cd265332f0ded72f9adfeec515 {"aliquot_tag": "ALQ_3984552b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02347.MethArray.Green.T C3L-02347 UCEC Methylation_Array tumor CPT0113850009 203219670150_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8951ad75-79f1-41ba-93dc-06cf6d1b37b7 02a304b51ce8f2e0e6ca69e64a6b8f50 {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.MethArray.Red.T C3L-02347 UCEC Methylation_Array tumor CPT0113850009 203219670150_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 58c916b8-977c-4742-9236-5c2a43ab6cf1 876afbefb75af67975045ef14e8bbadb {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.miRNA-Seq.A.hg38 C3L-02347 UCEC miRNA-Seq tissue_normal CPT0113860009 5a07ec02-6cca-4c9a-b845-cc16fb51938f_mirnaseq_gdc_realn.bam 295177719 BAM harmonized CPTAC3 bbff4d11-aac0-49a6-9b10-6b9c26f05920 cc182aeb84ceac56adf4a0a05832e766 {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.miRNA-Seq.S24_L003_R1.A C3L-02347 UCEC miRNA-Seq tissue_normal CPT0113860009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L003_R1_001.unaln.bam 260011031 BAM S24_L003_R1 submitted_unaligned CPTAC3 55d76d81-9c41-400a-88c2-11126e80d105 d68e3de1471e8d40ea6d2cac95e20598 {"aliquot_tag": "ALQ_e8319ee4", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.miRNA-Seq.S31_L003_R1.T C3L-02347 UCEC miRNA-Seq tumor CPT0113850006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACGAT_S31_L003_R1_001.unaln.bam 223438103 BAM S31_L003_R1 submitted_unaligned CPTAC3 3d0b4474-f423-4867-993e-f93961e61447 1efcdd8c151868b0dad2a678c73dcdb2 {"aliquot_tag": "ALQ_3f2ef9a5", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.miRNA-Seq.T.hg38 C3L-02347 UCEC miRNA-Seq tumor CPT0113850006 30d22cc0-122f-4fb5-8826-9fe825580dd0_mirnaseq_gdc_realn.bam 246998067 BAM harmonized CPTAC3 721f2013-25cc-4c51-8435-33d4127c1c71 8d0d3cbbfa47a26209015d60333254ef {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.chimeric.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.chimeric.gdc_realn.bam 71914814 BAM chimeric harmonized CPTAC3 246aa25e-3bc4-48f6-9394-7155644688bf 163fb099402df26c3c2dd29d980d4971 {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.RNA-Seq.chimeric.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.chimeric.gdc_realn.bam 32394585 BAM chimeric harmonized CPTAC3 20578204-e181-4385-a703-fc6035d2091c b5c8be89591b20753e606536ae32916b {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.chimeric.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.chimeric.gdc_realn.bam 64283576 BAM chimeric harmonized CPTAC3 bf70882a-062e-4d9c-a635-089e24c3beeb ee4bacb829323fbc39555d9fd1bd3985 {"aliquot_tag": "ALQ_e891a7ef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.genomic.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.genomic.gdc_realn.bam 9774574115 BAM genomic harmonized CPTAC3 8a3f16ff-19cb-4a98-ac78-19127c95348d 21e13533edf6fb9b454e0e198cf1bd2b {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.RNA-Seq.genomic.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.genomic.gdc_realn.bam 10325701776 BAM genomic harmonized CPTAC3 3c93869c-4350-4991-a752-ee0ac3801026 249183d4c6ae4ffb66d7d04edd833d59 {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.genomic.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.genomic.gdc_realn.bam 5922096398 BAM genomic harmonized CPTAC3 4b899a12-ef34-4ee7-8164-ebc37fc59d3a b95911cf0bc2f7803308d202da02e2f2 {"aliquot_tag": "ALQ_e891a7ef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.S10_L003_R1.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R1_001.fastq.gz 4608723693 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 5dfdde84-1e23-4280-8b55-4132629b16b7 d2d305ad1da0297a08e9c2e9216c174a {"aliquot_tag": "ALQ_3f2ef9a5", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.S10_L003_R2.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5000703190 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 dc6c11b1-6e28-44d2-aac1-10d5062b327c 7100cc36cae4670a8033d3cb6fa93356 {"aliquot_tag": "ALQ_3f2ef9a5", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.S19_L007_R1.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R1_001.fastq.gz 4429373823 FASTQ S19_L007_R1 submitted_unaligned CPTAC3 abbd8419-e029-4f17-b719-452c26a4bee5 4074b60669f0ebbf954cae28406b1fee {"aliquot_tag": "ALQ_e8319ee4", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.RNA-Seq.S19_L007_R2.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R2_001.fastq.gz 4701576640 FASTQ S19_L007_R2 submitted_unaligned CPTAC3 89251cd0-b752-4190-ab82-45a6e1d10bae 6d1b5daabb90f4b179450543ad8fd59b {"aliquot_tag": "ALQ_e8319ee4", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.RNA-Seq.S70_R1.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R1_001.fastq.gz 3547212170 FASTQ S70_R1 submitted_unaligned CPTAC3 853dc09c-ac82-4d67-8af0-0b795b8f7850 ac9eeb5889e3e1f131d3449b33cff4f7 {"aliquot_tag": "ALQ_e891a7ef", "sample": "S70", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.S70_R2.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R2_001.fastq.gz 3664246903 FASTQ S70_R2 submitted_unaligned CPTAC3 ec783cff-cde6-456d-b52b-5b4057b8f6ed 7679f894032394ae749ba6c211d6f1fe {"aliquot_tag": "ALQ_e891a7ef", "sample": "S70", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.transcriptome.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.transcriptome.gdc_realn.bam 10167090773 BAM transcriptome harmonized CPTAC3 e0e5c1ae-1201-4022-bdc9-26ade375e3b7 559a50fc6ef13f3f5dbfe897b8650370 {"aliquot_tag": "ALQ_e8319ee4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.RNA-Seq.transcriptome.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.transcriptome.gdc_realn.bam 12055231179 BAM transcriptome harmonized CPTAC3 734cb83c-b5e2-4684-a972-0d43895b344f d9cfc9802f7e5f04ab780d43d9875511 {"aliquot_tag": "ALQ_3f2ef9a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.RNA-Seq.transcriptome.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.transcriptome.gdc_realn.bam 3276911283 BAM transcriptome harmonized CPTAC3 c91453b6-29a6-45c9-b168-d5979b54e01f 7bb07168a6be355ffc17e70fe9801900 {"aliquot_tag": "ALQ_e891a7ef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.WGS.A C3L-02347 UCEC WGS tissue_normal CPT0113860006 CPT0113860006.WholeGenome.RP-1303.bam 53388058103 BAM submitted_aligned CPTAC3 7e0e8e0d-a652-4030-8f32-fd248f6ee6cc ed3b34d0a30d702e874afb30c31c6b24 {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.WGS.A.hg38 C3L-02347 UCEC WGS tissue_normal CPT0113860006 abb5244a-d9bd-4220-907c-85ed67bbb1ca_wgs_gdc_realn.bam 78161109946 BAM harmonized CPTAC3 91c88ca7-21dd-4b8d-9056-281dc071246d ae389dbc8b8597a0777f0fca29a18322 {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.WGS.N C3L-02347 UCEC WGS blood_normal CPT0115290002 CPT0115290002.WholeGenome.RP-1303.bam 58808161174 BAM submitted_aligned CPTAC3 f26a76c8-1180-4dae-8594-39a650cb3046 8758d6be442a7e33f951b67c2a7b0742 {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02347.WGS.N.hg38 C3L-02347 UCEC WGS blood_normal CPT0115290002 f313f074-39ce-4b85-b089-14dd0f779eef_wgs_gdc_realn.bam 84430999819 BAM harmonized CPTAC3 7aee66b5-ea0b-4437-88b6-8c6d5a50504a fb5a01b43a472fdb91f02265c1d1a273 {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02347.WGS.T C3L-02347 UCEC WGS tumor CPT0113850009 CPT0113850009.WholeGenome.RP-1303.bam 58104872813 BAM submitted_aligned CPTAC3 dee2a8b1-0625-4203-a629-e8f1ae746af6 60b0b4a87c1c22703f4fdcd8f03bb50d {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.WGS.T.hg38 C3L-02347 UCEC WGS tumor CPT0113850009 7656e417-b4b0-47d8-9ab4-5da0c7df5f2c_wgs_gdc_realn.bam 85272851258 BAM harmonized CPTAC3 2d1bdace-9a2b-4ae4-a390-150700f01f24 eb7be6d59bf74ead7439f16aab49cae6 {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.WXS.A C3L-02347 UCEC WXS tissue_normal CPT0113860006 CPT0113860006.WholeExome.RP-1303.bam 19488221539 BAM submitted_aligned CPTAC3 e985a443-ed07-489c-abb4-eb007af58060 94bb8f1a3cfe5ccbd95a4bbe54c0dd13 {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.WXS.A.hg38 C3L-02347 UCEC WXS tissue_normal CPT0113860006 abb5244a-d9bd-4220-907c-85ed67bbb1ca_wxs_gdc_realn.bam 26196289925 BAM harmonized CPTAC3 7f79bb4d-bab5-4083-9082-cbffafe05c24 2df7aadbf8ccb7ee05f499e226a1857d {"aliquot_tag": "ALQ_788e8375", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02347.WXS.N C3L-02347 UCEC WXS blood_normal CPT0115290002 CPT0115290002.WholeExome.RP-1303.bam 28104255045 BAM submitted_aligned CPTAC3 909cbe07-7ab9-4512-85cc-2543de855abd ab7bc158c9ad9c125e9a50201be57f1a {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02347.WXS.N.hg38 C3L-02347 UCEC WXS blood_normal CPT0115290002 f313f074-39ce-4b85-b089-14dd0f779eef_wxs_gdc_realn.bam 39645313258 BAM harmonized CPTAC3 d4040ace-c044-4f49-a271-7dcf2ae56d61 841bba55c8f26a2a8f9aedabf6dbd2ea {"aliquot_tag": "ALQ_3ff8c6e1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02347.WXS.T C3L-02347 UCEC WXS tumor CPT0113850009 CPT0113850009.WholeExome.RP-1303.bam 22291211087 BAM submitted_aligned CPTAC3 a0483e28-f226-47df-80e8-6a36ccf654b8 52383107f5232bdd5c7559709a5087ad {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02347.WXS.T.hg38 C3L-02347 UCEC WXS tumor CPT0113850009 7656e417-b4b0-47d8-9ab4-5da0c7df5f2c_wxs_gdc_realn.bam 30302882928 BAM harmonized CPTAC3 68a1f482-caac-4f8c-9d33-62740dbbbd45 29810c76edfce4f8f174819ab9780b06 {"aliquot_tag": "ALQ_af91e434", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02348.MethArray.Green.A C3L-02348 LUAD Methylation_Array tissue_normal CPT0115090009 203028200023_R04C01_Grn.idat 13676238 IDAT Green NA CPTAC3 c2ca2ab0-033f-48e4-9a1b-c3204808615b b0a55938892d1d157917363ed92588f7 {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.MethArray.Green.T C3L-02348 LUAD Methylation_Array tumor CPT0115070009 202234380064_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c020f3f1-5883-4203-be6c-3ce1fb23f34f 2f5159e99584df89fd4f59c445aaff73 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.MethArray.Red.A C3L-02348 LUAD Methylation_Array tissue_normal CPT0115090009 203028200023_R04C01_Red.idat 13676238 IDAT Red NA CPTAC3 6249f101-5cb8-415d-95f1-c81323467dc2 4fd170edbabea13c0e599f567c2cc906 {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.MethArray.Red.T C3L-02348 LUAD Methylation_Array tumor CPT0115070009 202234380064_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 005adb00-134c-4c53-a7a0-4794b7667b8b d6f19ec1a8a84f0f997f97f2c19ebd37 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.miRNA-Seq.A.hg38 C3L-02348 LUAD miRNA-Seq tissue_normal CPT0115090006 9aa79f98-d384-46b6-bfd7-06e805841536_mirnaseq_gdc_realn.bam 237264030 BAM harmonized CPTAC3 30ecea49-36c3-4a34-8fee-e4c1fad4382b 133dd092534fb795c00918b4c6448922 {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.miRNA-Seq.S22_L005_R1.A C3L-02348 LUAD miRNA-Seq tissue_normal CPT0115090006 181108_UNC31-K00269_0162_AH255GBBXY_TCCCGA_S22_L005_R1_001.unaln.bam 211877763 BAM S22_L005_R1 submitted_unaligned CPTAC3 5e0058e3-b20f-4ca2-bf7f-bb578fcca5e2 466df12cea78b5e318bd1f953a259bc1 {"aliquot_tag": "ALQ_755da3f3", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.miRNA-Seq.S48_L003_R1.T C3L-02348 LUAD miRNA-Seq tumor CPT0115070006 181119_UNC31-K00269_0165_AH27WCBBXY_GGTAGC_S48_L003_R1_001.unaln.bam 203229394 BAM S48_L003_R1 submitted_unaligned CPTAC3 0a9a41f2-9374-40fc-b5c2-1a506c697d79 7dacd97747bd3ece82874e6d942c585c {"aliquot_tag": "ALQ_ca6d1d92", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.miRNA-Seq.T.hg38 C3L-02348 LUAD miRNA-Seq tumor CPT0115070006 4be684db-f3ea-4d64-8386-70899c50e7d9_mirnaseq_gdc_realn.bam 223237923 BAM harmonized CPTAC3 5c3b39f1-e536-4882-8b9a-c93d67574512 8030f5dd459c312e9c508492563faaaf {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.RNA-Seq.chimeric.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.chimeric.gdc_realn.bam 102044429 BAM chimeric harmonized CPTAC3 11e8ba14-b01a-4cf1-b6c0-4adb4bc6594f eef9eef976492f3344e05edd92481d01 {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.RNA-Seq.chimeric.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.chimeric.gdc_realn.bam 166367537 BAM chimeric harmonized CPTAC3 e3355a7b-26ae-4c39-b35b-5a08937b4ec0 00f1938cdbc7868318e016a6b4f10aa7 {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.RNA-Seq.genomic.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.genomic.gdc_realn.bam 8944078812 BAM genomic harmonized CPTAC3 d81998c8-138b-4a4a-be9b-46ae4ed9c762 8cee7b87d571cc87116c73d493eaaa87 {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.RNA-Seq.genomic.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.genomic.gdc_realn.bam 9314992269 BAM genomic harmonized CPTAC3 a05c8880-c5cf-4592-a940-f38435df8f8a a4fb382c11f0b39ed3bd9588d3e5d07b {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.RNA-Seq.S10_L003_R1.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R1_001.fastq.gz 4340031904 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 ae598f4f-e0d0-408b-95af-5a66f66806e2 392b98ccf1ab50422c623342a2fdedfd {"aliquot_tag": "ALQ_ca6d1d92", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.RNA-Seq.S10_L003_R2.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R2_001.fastq.gz 4834437655 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 1346e234-53d7-44ae-9586-96c827c2f94e 9f1afecdde11d99bfb3ab36a15d5014e {"aliquot_tag": "ALQ_ca6d1d92", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.RNA-Seq.S1_L001_R1.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R1_001.fastq.gz 4270003276 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 1cdf25ca-920c-4f76-8bcf-6b55a52862cf 4131c0b036ccbe8b01c527335cfb30ff {"aliquot_tag": "ALQ_755da3f3", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.RNA-Seq.S1_L001_R2.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R2_001.fastq.gz 4696678825 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 a8c23156-1897-4834-8e25-5be6c4e53be7 02f4625e2be0f3e27c39298b73109601 {"aliquot_tag": "ALQ_755da3f3", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.RNA-Seq.transcriptome.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.transcriptome.gdc_realn.bam 10945997575 BAM transcriptome harmonized CPTAC3 0277da03-7dd4-44c8-be44-8d1657812625 637b2fc2a402aa9d85d7f02b5055a6fb {"aliquot_tag": "ALQ_755da3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.RNA-Seq.transcriptome.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.transcriptome.gdc_realn.bam 11325335490 BAM transcriptome harmonized CPTAC3 8bad9ed2-bfb6-44b4-89b7-005a54b0d8e8 04e215130f703ac1845f0d627a946188 {"aliquot_tag": "ALQ_ca6d1d92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.WGS.A C3L-02348 LUAD WGS tissue_normal CPT0115090009 CPT0115090009.WholeGenome.RP-1303.bam 51412118987 BAM submitted_aligned CPTAC3 e0b20b6b-7783-4a41-8285-5fa8c3e89af1 68e83b2d40bd7f1130db89b3e415363d {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.WGS.A.hg38 C3L-02348 LUAD WGS tissue_normal CPT0115090009 c8f77a00-dd00-44bc-8a2e-6c802f975b40_wgs_gdc_realn.bam 75362403405 BAM harmonized CPTAC3 f8d9374d-ba50-4ed6-9c9e-ef2e00a1ef0f d3ecc935e5cce4bacbece07d05a5afac {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.WGS.N C3L-02348 LUAD WGS blood_normal CPT0115320002 CPT0115320002.WholeGenome.RP-1303.bam 54172491080 BAM submitted_aligned CPTAC3 7a7a1d6a-5e22-4d7f-8eab-8c8cbd662df6 616a6beebf171e07adc60833fd57ab78 {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02348.WGS.N.hg38 C3L-02348 LUAD WGS blood_normal CPT0115320002 d140c210-45d6-4aa0-9f78-cde6b7a29207_wgs_gdc_realn.bam 79368968869 BAM harmonized CPTAC3 518cb3c1-9b81-464a-9de0-b7ddbd3a3250 adc35540601fb08ff9cd768d03b3a9ef {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02348.WGS.T C3L-02348 LUAD WGS tumor CPT0115070009 CPT0115070009.WholeGenome.RP-1303.bam 74323682073 BAM submitted_aligned CPTAC3 8c1778f5-f38d-4eb7-a815-dcf6c31ae3fa b81aa8b1ffc9b98a54eba89d649f2f9b {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.WGS.T.hg38 C3L-02348 LUAD WGS tumor CPT0115070009 4a14d77a-990e-4cba-854c-856a434fa63a_wgs_gdc_realn.bam 110215792391 BAM harmonized CPTAC3 e86c17db-ab76-4cce-9bdc-7ef2d2288345 e6b42d722237429370dc9cb787c53a20 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.WXS.A C3L-02348 LUAD WXS tissue_normal CPT0115090009 CPT0115090009.WholeExome.RP-1303.bam 44602382788 BAM submitted_aligned CPTAC3 3f4fc458-fba9-46e5-8f92-91a09516d8cb d3416e4ad45b76f0beac3fb8f103aa46 {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.WXS.A.hg38 C3L-02348 LUAD WXS tissue_normal CPT0115090009 c8f77a00-dd00-44bc-8a2e-6c802f975b40_wxs_gdc_realn.bam 61252663449 BAM harmonized CPTAC3 069fc6cd-e124-46e5-bc07-59946e67f0de 7ccda218b04005815e007585433c5bea {"aliquot_tag": "ALQ_e5e2be62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02348.WXS.N C3L-02348 LUAD WXS blood_normal CPT0115320002 CPT0115320002.WholeExome.RP-1303.bam 36520666700 BAM submitted_aligned CPTAC3 c6ed7e64-acaa-4213-a678-b2a470d55de5 f3ba87b334c5dd823b8c5780e7378da0 {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02348.WXS.N.hg38 C3L-02348 LUAD WXS blood_normal CPT0115320002 d140c210-45d6-4aa0-9f78-cde6b7a29207_wxs_gdc_realn.bam 50469998413 BAM harmonized CPTAC3 53b61719-ee3c-4685-8858-b324f6afa0bf c85c2effc5231532911a1532f6ab0061 {"aliquot_tag": "ALQ_83742455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02348.WXS.T C3L-02348 LUAD WXS tumor CPT0115070009 CPT0115070009.WholeExome.RP-1303.bam 29837277613 BAM submitted_aligned CPTAC3 c9084503-3f95-4810-80df-80d0dbac008a 7193de47fadf6f4dfe2b0f6dec408a1e {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02348.WXS.T.hg38 C3L-02348 LUAD WXS tumor CPT0115070009 4a14d77a-990e-4cba-854c-856a434fa63a_wxs_gdc_realn.bam 40774793992 BAM harmonized CPTAC3 7dde3446-fb2e-4207-a30d-c7708d8b26e5 6c53425891d8eaf578e73983fe2ee685 {"aliquot_tag": "ALQ_5ad20003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.MethArray.Green.A C3L-02349 LSCC Methylation_Array tissue_normal CPT0112550006 203219670141_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b4667d9e-1e25-46d3-b024-e61470ae4175 203e9f358ab8a4ca9daac9c099978a3f {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.MethArray.Red.A C3L-02349 LSCC Methylation_Array tissue_normal CPT0112550006 203219670141_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 c49fc9d8-973f-4bbb-a85b-adea597073bb ddb09b9813f7c6dff01465c08703c24e {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.miRNA-Seq.A.hg38 C3L-02349 LSCC miRNA-Seq tissue_normal CPT0112550009 13f76cf2-63f8-41db-b6e8-22e8a75af357_mirnaseq_gdc_realn.bam 267290197 BAM harmonized CPTAC3 ca357a42-eb8d-4d65-a5ae-76fff7afd192 e990e5628df2495ff3b5987438f9b47b {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.miRNA-Seq.S34_L002_R1.A C3L-02349 LSCC miRNA-Seq tissue_normal CPT0112550009 181219_UNC31-K00269_0173_BHYGJJBBXX_CATTTT_S34_L002_R1_001.unaln.bam 239339606 BAM S34_L002_R1 submitted_unaligned CPTAC3 bb9fba8c-3c7a-4535-a0c6-ba9ef61035a6 8640824d7be4cefdb6037f22d60eac1b {"aliquot_tag": "ALQ_b578fc5e", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.miRNA-Seq.S4_L001_R1.T C3L-02349 LSCC miRNA-Seq tumor CPT0112540006 181219_UNC31-K00269_0173_BHYGJJBBXX_TGACCA_S4_L001_R1_001.unaln.bam 199045231 BAM S4_L001_R1 submitted_unaligned CPTAC3 a4706239-d87a-4e30-96d6-5846bb5c4719 a53250dcee89d6618eeb4bb3a668223c {"aliquot_tag": "ALQ_18a7c87f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.miRNA-Seq.T.hg38 C3L-02349 LSCC miRNA-Seq tumor CPT0112540006 f66e96e0-337f-4a7d-a11b-41f8cf478325_mirnaseq_gdc_realn.bam 218473355 BAM harmonized CPTAC3 f4d6054b-4241-49ec-82bc-3b11dd8f550d 18622945c75b5b784d0650ac13e1f48e {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.RNA-Seq.chimeric.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.chimeric.gdc_realn.bam 30645150 BAM chimeric harmonized CPTAC3 559ed92c-863d-4aa5-a9c6-4aa1cc5ce2d6 626de4d6fffdc2ca540009b45ff47893 {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.RNA-Seq.chimeric.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.chimeric.gdc_realn.bam 26103970 BAM chimeric harmonized CPTAC3 ded61a49-4fd2-4331-9958-02ebf9efb2f6 34c2ff0a1aa5ae5e0e2af7443c20390d {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.RNA-Seq.genomic.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.genomic.gdc_realn.bam 10230801754 BAM genomic harmonized CPTAC3 613b0530-7e84-41b6-9732-624c625c01b8 f507195908744d403c073528abaccba0 {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.RNA-Seq.genomic.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.genomic.gdc_realn.bam 7585394000 BAM genomic harmonized CPTAC3 32938798-2b5e-4211-b34b-d165d6efa458 f5e591b4f181e6bdb295c65f0a8bfe8c {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.RNA-Seq.S17_L005_R1.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4178774540 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 0c46a21c-b247-4986-93d8-1349c2a4033d 564d56c76ee8df5ddafd8499de2ab018 {"aliquot_tag": "ALQ_b578fc5e", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.RNA-Seq.S17_L005_R2.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4527033850 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 6551256d-3023-414d-8f66-9574a12944d5 61b7af49897c385ddd511254ee34ff17 {"aliquot_tag": "ALQ_b578fc5e", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.RNA-Seq.S20_L005_R1.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R1_001.fastq.gz 3434930401 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 3ce560ec-b154-46d6-b204-a398180fb032 1376aa427b5532a04f2ea5894b2f6aac {"aliquot_tag": "ALQ_18a7c87f", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.RNA-Seq.S20_L005_R2.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R2_001.fastq.gz 3526817878 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 f19fc187-52d3-4b66-978f-e46acbc1f4b8 4f3dd94e16e3c97735a1246e2b366c7d {"aliquot_tag": "ALQ_18a7c87f", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.RNA-Seq.transcriptome.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.transcriptome.gdc_realn.bam 11024482160 BAM transcriptome harmonized CPTAC3 3ffda287-3f72-44dc-a6f1-c2b71c821fe4 e5ed02602df7181cae09de6ef200f956 {"aliquot_tag": "ALQ_b578fc5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.RNA-Seq.transcriptome.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.transcriptome.gdc_realn.bam 10942556899 BAM transcriptome harmonized CPTAC3 08989de4-6598-426a-881f-df381c91ea00 f1631eacf7d3d392224cff1aaa6a1831 {"aliquot_tag": "ALQ_18a7c87f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.WGS.A C3L-02349 LSCC WGS tissue_normal CPT0112550006 CPT0112550006.WholeGenome.RP-1303.bam 56642330763 BAM submitted_aligned CPTAC3 33e50219-83be-44e5-a174-6718f3dfe1f0 47b57cb11dc340fc462794ea17b83641 {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.WGS.A.hg38 C3L-02349 LSCC WGS tissue_normal CPT0112550006 27e94b6f-a024-4066-9511-05989a7c9124_wgs_gdc_realn.bam 81632153164 BAM harmonized CPTAC3 6cb5230a-e25f-422a-8da0-3246e5020e90 f8361d6475326c3e4cd0aa644b9970fe {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.WGS.N C3L-02349 LSCC WGS blood_normal CPT0115160002 CPT0115160002.WholeGenome.RP-1303.bam 60461090883 BAM submitted_aligned CPTAC3 38f7bc3a-6c57-4bc8-80dd-44b49b2343ff 6b6ef69bcdd9feda465382c55f1406b9 {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02349.WGS.N.hg38 C3L-02349 LSCC WGS blood_normal CPT0115160002 3ba3953b-5543-477c-9bb0-4433cd773a8f_wgs_gdc_realn.bam 87153972921 BAM harmonized CPTAC3 1261730f-702c-4781-9d77-bd1c59244821 ced3f8f4480aad89e61927f6b2fcf632 {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02349.WGS.T C3L-02349 LSCC WGS tumor CPT0112540009 CPT0112540009.WholeGenome.RP-1303.bam 53687944781 BAM submitted_aligned CPTAC3 8e21f6af-c0dc-404e-9449-8d83afce5286 8bd050ec632db5ae5d689c1d2e16ccc9 {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.WGS.T.hg38 C3L-02349 LSCC WGS tumor CPT0112540009 d26de4cd-762b-4e7e-bb50-e98df6cf7077_wgs_gdc_realn.bam 76436186000 BAM harmonized CPTAC3 8c0d0935-44e8-46fb-b258-eb45b6ac0447 db45f1e7bb5df11033dc6f3482be768f {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.WXS.A C3L-02349 LSCC WXS tissue_normal CPT0112550006 CPT0112550006.WholeExome.RP-1303.bam 25154116928 BAM submitted_aligned CPTAC3 efac05ea-ac64-44b4-aefd-50fdfd9aa6c8 ab88e2b126e5d875bceb4641373828fc {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.WXS.A.hg38 C3L-02349 LSCC WXS tissue_normal CPT0112550006 27e94b6f-a024-4066-9511-05989a7c9124_wxs_gdc_realn.bam 34301694925 BAM harmonized CPTAC3 d4f1528b-c5ab-44ea-b09c-fa2e3a4eeac6 6e5fb2ee540db93ad124334fef9699c1 {"aliquot_tag": "ALQ_25c7e1cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02349.WXS.N C3L-02349 LSCC WXS blood_normal CPT0115160002 CPT0115160002.WholeExome.RP-1303.bam 30105853777 BAM submitted_aligned CPTAC3 e35189ff-f4b4-497c-ae74-da5b2f60f45e 296d15b1e6a59c8161d032a42ed2a1b5 {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02349.WXS.N.hg38 C3L-02349 LSCC WXS blood_normal CPT0115160002 3ba3953b-5543-477c-9bb0-4433cd773a8f_wxs_gdc_realn.bam 41412423446 BAM harmonized CPTAC3 c624be4d-286d-4776-b77e-d249fbe7b17e fc469157dbd4b91399720c79b21b01aa {"aliquot_tag": "ALQ_3b3c239e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02349.WXS.T C3L-02349 LSCC WXS tumor CPT0112540009 CPT0112540009.WholeExome.RP-1303.bam 26385989176 BAM submitted_aligned CPTAC3 ace7f7be-277a-4bca-a2cd-8d57c88d5736 6c4f0cc42a3cc6b802c235991baece7c {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02349.WXS.T.hg38 C3L-02349 LSCC WXS tumor CPT0112540009 d26de4cd-762b-4e7e-bb50-e98df6cf7077_wxs_gdc_realn.bam 35937703549 BAM harmonized CPTAC3 1d1d3870-7d61-4f63-8cdb-2c0a07ef22b7 47618b2344c42cefcea859db0f414ff2 {"aliquot_tag": "ALQ_8818d5ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.MethArray.Green.A C3L-02350 LUAD Methylation_Array tissue_normal CPT0104760009 203027390040_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 6011a167-c791-4b4c-a53c-04b33c22102f f490382693e71d007b98dafd2a2cacbe {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.MethArray.Green.T C3L-02350 LUAD Methylation_Array tumor CPT0104750009 202234380024_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 14240e1b-c5cd-4904-bec0-b5e6040dee60 9f6035503911d31287cba2476f80aeaa {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.MethArray.Red.A C3L-02350 LUAD Methylation_Array tissue_normal CPT0104760009 203027390040_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 99106f41-5edd-48b3-8f7b-66e47f8a5e48 f4d5139d5943caa017316f1c9be876f9 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.MethArray.Red.T C3L-02350 LUAD Methylation_Array tumor CPT0104750009 202234380024_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 145cd04d-aacb-4a37-b0fe-35e1724cf44f 3f6ced7128b91b7956ce0ecfe98efd63 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.miRNA-Seq.A.hg38 C3L-02350 LUAD miRNA-Seq tissue_normal CPT0104760006 8a8b8bcb-d41a-43d9-bd5f-a5ff4520eb64_mirnaseq_gdc_realn.bam 264717063 BAM harmonized CPTAC3 9d9701e6-2983-472a-ae28-4f997dfd3b1a 2a28781224965c5cfbe790b90d70f1f8 {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.miRNA-Seq.S13_L007_R1.A C3L-02350 LUAD miRNA-Seq tissue_normal CPT0104760006 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L007_R1_001.unaln.bam 237909545 BAM S13_L007_R1 submitted_unaligned CPTAC3 39e39838-395d-4454-8721-c5caf1f9bfe7 6df7aaf296ac6b4690eb2733184dbb3b {"aliquot_tag": "ALQ_80d50fb0", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.miRNA-Seq.S41_L007_R1.T C3L-02350 LUAD miRNA-Seq tumor CPT0104750006 181108_UNC31-K00269_0163_BH23TVBBXY_GACGAC_S41_L007_R1_001.unaln.bam 235654598 BAM S41_L007_R1 submitted_unaligned CPTAC3 66a007ac-96dc-42d1-951c-5ad8bafa7a09 bf1ec3ac08488350a219f38a32c23416 {"aliquot_tag": "ALQ_c7757560", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.miRNA-Seq.T.hg38 C3L-02350 LUAD miRNA-Seq tumor CPT0104750006 e0a28eeb-9753-47d0-ad0b-2c086930e63f_mirnaseq_gdc_realn.bam 258576661 BAM harmonized CPTAC3 42b5095e-20fc-4044-abba-00da541d1abe a91346ed775c2db3ca91cf2419a404f3 {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.RNA-Seq.chimeric.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.chimeric.gdc_realn.bam 75228752 BAM chimeric harmonized CPTAC3 d7964fb7-36ac-4a78-b291-410a120c34aa bd6750052ef6f1c88a834544f932e321 {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.RNA-Seq.chimeric.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.chimeric.gdc_realn.bam 35180451 BAM chimeric harmonized CPTAC3 41da6992-f00f-4f4b-95cb-cec8a36fca98 50578865f9086a389d55696110a014ad {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.RNA-Seq.genomic.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.genomic.gdc_realn.bam 8405764202 BAM genomic harmonized CPTAC3 f6cde4c4-3e31-4128-83e4-bee6b3152f06 14ec77dfc83bb996b2679f6adec2c4e2 {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.RNA-Seq.genomic.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.genomic.gdc_realn.bam 9805706221 BAM genomic harmonized CPTAC3 e78d6f47-63eb-44c1-9d32-2d776d36d300 c1b2bd9ed169ba008d38725f222e600b {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.RNA-Seq.S16_L004_R1.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3967363449 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 33fc37f3-73e1-4159-8e52-3be53dd9e2c3 f9972bd96ce5c1e88e296ea34ca13d0a {"aliquot_tag": "ALQ_80d50fb0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.RNA-Seq.S16_L004_R2.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 4451962157 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 a09255be-5c21-4ef8-a02d-f2639f19ed6e a264e72ada4a81a218b29c90701f60d4 {"aliquot_tag": "ALQ_80d50fb0", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.RNA-Seq.S21_L006_R1.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R1_001.fastq.gz 4372927334 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 82879494-5e4b-463c-bd21-c7f0f17a0f48 5d5d5132d0d201ca4108b46aa1a292e1 {"aliquot_tag": "ALQ_c7757560", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.RNA-Seq.S21_L006_R2.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4896138767 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 5e35f2ef-3412-40aa-8261-3698acc0db0a 721dcae52e0a2ae635184e3b1d3df239 {"aliquot_tag": "ALQ_c7757560", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.RNA-Seq.transcriptome.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.transcriptome.gdc_realn.bam 9982352731 BAM transcriptome harmonized CPTAC3 34bf31eb-180f-4553-be7a-c387ac35e35b 9652dd74df20db18acb8769ff2eba19c {"aliquot_tag": "ALQ_80d50fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.RNA-Seq.transcriptome.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.transcriptome.gdc_realn.bam 13125116655 BAM transcriptome harmonized CPTAC3 f478cea5-99ba-4f07-b283-ae6751472002 71672b9b6018a8f77d9e21453336ea05 {"aliquot_tag": "ALQ_c7757560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.WGS.A C3L-02350 LUAD WGS tissue_normal CPT0104760009 CPT0104760009.WholeGenome.RP-1303.bam 53054949512 BAM submitted_aligned CPTAC3 39ab75a5-82fc-4cd0-b79f-d8e59763651e f2672ee8f0f443bd785db244866776b3 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.WGS.A.hg38 C3L-02350 LUAD WGS tissue_normal CPT0104760009 e7f74934-b812-43c5-94f5-2c87f74b7f6f_wgs_gdc_realn.bam 77014202932 BAM harmonized CPTAC3 0202116f-d3a0-432e-88ec-46291fa4338b 74ed621144a0e1f48e48233d16efd678 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.WGS.N C3L-02350 LUAD WGS blood_normal CPT0105180002 CPT0105180002.WholeGenome.RP-1303.bam 63842989115 BAM submitted_aligned CPTAC3 2abaa826-6129-41e1-8de0-4376bfdd3d40 0c6cd9b1b92ed0c4682b1fc0cce49844 {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02350.WGS.N.hg38 C3L-02350 LUAD WGS blood_normal CPT0105180002 2c8cbf2e-1ac6-46cb-9315-3690d564180f_wgs_gdc_realn.bam 93696489662 BAM harmonized CPTAC3 4dacf396-02e5-436c-ab15-6d0909282714 9151e1ebfcc3b93ecb1fbf2725b09f92 {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02350.WGS.T C3L-02350 LUAD WGS tumor CPT0104750009 CPT0104750009.WholeGenome.RP-1303.bam 56966838098 BAM submitted_aligned CPTAC3 21bcb559-3785-4d52-9870-85e2dfd9b22d 6f75bc2ec6c8a0bd4c156df937415b47 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.WGS.T.hg38 C3L-02350 LUAD WGS tumor CPT0104750009 c3ec294d-2862-4510-ba10-a7ea7d3ca87b_wgs_gdc_realn.bam 84062134673 BAM harmonized CPTAC3 e66b912b-c2b5-431d-b928-68db0c4b1a57 45c9ac387bacb94308860dae93f9616c {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.WXS.A C3L-02350 LUAD WXS tissue_normal CPT0104760009 CPT0104760009.WholeExome.RP-1303.bam 29479321333 BAM submitted_aligned CPTAC3 7b1039e0-0ff6-4e88-a0ae-fe347629c7f8 4795ee09791457257135aa6e2b3a8f24 {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.WXS.A.hg38 C3L-02350 LUAD WXS tissue_normal CPT0104760009 e7f74934-b812-43c5-94f5-2c87f74b7f6f_wxs_gdc_realn.bam 40248991114 BAM harmonized CPTAC3 a45ec5c6-480d-448f-8bda-f36fdacbea72 af4747f1b07564f555541cf016c9f37b {"aliquot_tag": "ALQ_106a1221", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02350.WXS.N C3L-02350 LUAD WXS blood_normal CPT0105180002 CPT0105180002.WholeExome.RP-1303.bam 34059500348 BAM submitted_aligned CPTAC3 7a18843e-d157-469e-bdbf-8ae2b0adfcc8 bc94c17a657765688a399d56545ff941 {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02350.WXS.N.hg38 C3L-02350 LUAD WXS blood_normal CPT0105180002 2c8cbf2e-1ac6-46cb-9315-3690d564180f_wxs_gdc_realn.bam 45189829485 BAM harmonized CPTAC3 d475354c-cd2f-4da7-9dac-78491c5924f9 8f259ef14deefd54632f86ed1be9983f {"aliquot_tag": "ALQ_48a69d61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02350.WXS.T C3L-02350 LUAD WXS tumor CPT0104750009 CPT0104750009.WholeExome.RP-1303.bam 33782147829 BAM submitted_aligned CPTAC3 9c87faa0-f200-45d5-a11e-15798ca158e3 eff1920a672c30183a45306670bfddc1 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02350.WXS.T.hg38 C3L-02350 LUAD WXS tumor CPT0104750009 c3ec294d-2862-4510-ba10-a7ea7d3ca87b_wxs_gdc_realn.bam 45512655229 BAM harmonized CPTAC3 bdc4a149-c480-4dbe-8b32-66a0856c4e7d b081c1f19b71faea8e91281bccad70b2 {"aliquot_tag": "ALQ_57ca68f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.MethArray.Green.A C3L-02352 CCRCC Methylation_Array tissue_normal CPT0104450006 204373100109_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 3ebeec4d-7f42-4263-a580-c6b38a58f3fb ccff13b326a6fef43a48039fa4146493 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.MethArray.Green.T C3L-02352 CCRCC Methylation_Array tumor CPT0104430009 202234370095_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 aa3dd4ac-6ccb-487e-954c-2b52d18fdae8 c5c5ac6480621ccf9f4df8ab7663256e {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.MethArray.Red.A C3L-02352 CCRCC Methylation_Array tissue_normal CPT0104450006 204373100109_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 0313fa7e-ede7-4bcc-a12c-a39a1a66f444 036ba6da5ad0002051887e25f70c9559 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.MethArray.Red.T C3L-02352 CCRCC Methylation_Array tumor CPT0104430009 202234370095_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 952637b3-bec6-4a17-a079-2a27a9987237 f509c82d615468b54cbde4f9dc0ecc76 {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.miRNA-Seq.A.hg38 C3L-02352 CCRCC miRNA-Seq tissue_normal CPT0104450009 95fc043d-e745-4ce8-925a-b788ae80da54_mirnaseq_gdc_realn.bam 245620658 BAM harmonized CPTAC3 f4bb8e02-c3ed-4af9-bca7-fc493ae25119 4c5d0f2f728c13eca2fa1dec79b6a925 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.miRNA-Seq.S20_L003_R1.T C3L-02352 CCRCC miRNA-Seq tumor CPT0104430006 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L003_R1_001.unaln.bam 239012552 BAM S20_L003_R1 submitted_unaligned CPTAC3 c3ad22c1-5dd7-49ea-a837-c065108ce288 029687344950aae898b8b682fca35a81 {"aliquot_tag": "ALQ_cea1f26e", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.miRNA-Seq.S38_L002_R1.A C3L-02352 CCRCC miRNA-Seq tissue_normal CPT0104450009 181119_UNC31-K00269_0165_AH27WCBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 221166447 BAM S38_L002_R1 submitted_unaligned CPTAC3 cd66ccdf-0aa1-4ea8-93f7-61f9acfb7838 c53768d0e2344b86be2716d268138739 {"aliquot_tag": "ALQ_d15e1a5f", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.miRNA-Seq.T.hg38 C3L-02352 CCRCC miRNA-Seq tumor CPT0104430006 b6d1e37b-80aa-471c-88f3-5f6a6adbd68a_mirnaseq_gdc_realn.bam 269762296 BAM harmonized CPTAC3 3cec1c8c-07d2-484c-84ac-05cd3545f332 740294010e1bfa1b463b25714fef6d39 {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.RNA-Seq.chimeric.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.chimeric.gdc_realn.bam 25334653 BAM chimeric harmonized CPTAC3 14141950-d5c5-41dc-945f-ae6ad56d1406 5c555893bdca9cc4dc156de449292695 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.RNA-Seq.chimeric.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.chimeric.gdc_realn.bam 44334225 BAM chimeric harmonized CPTAC3 dd06f542-88ad-496f-b979-c4a49fb5f0e0 3fea574b3b6e4475be1c23752c5090b2 {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.RNA-Seq.genomic.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.genomic.gdc_realn.bam 8720770380 BAM genomic harmonized CPTAC3 9dda95e4-d0e4-4f4d-851d-abc459d8f8bc 0b6f341e9aa958e72282c5825b24fc78 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.RNA-Seq.genomic.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.genomic.gdc_realn.bam 9879912473 BAM genomic harmonized CPTAC3 b14c3e46-f00f-416a-ad95-80ece7feafed 3734da3656765182c96a3623edd2b136 {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.RNA-Seq.S2_L007_R1.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4624350711 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 fd5263b8-c893-46c7-bb26-f9631fdfa767 d628a1b892067e936ad9ff830076fc68 {"aliquot_tag": "ALQ_cea1f26e", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.RNA-Seq.S2_L007_R2.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R2_001.fastq.gz 5097195016 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 c6b90cf8-197a-4924-870a-10c06fb61a4c fb79bd8d00e8e14fcc7a5315967f20ab {"aliquot_tag": "ALQ_cea1f26e", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.RNA-Seq.S6_L008_R1.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 3911764964 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 568682f4-733c-4baa-956d-42b89f875b39 5c40721d3e63e97fddf8837fa02d816b {"aliquot_tag": "ALQ_d15e1a5f", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.RNA-Seq.S6_L008_R2.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4206651727 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 7f2fbd91-4b5b-4f73-9959-c30c95b24651 947f26920a34b423e6c33b6e5bde8ec4 {"aliquot_tag": "ALQ_d15e1a5f", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.RNA-Seq.transcriptome.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.transcriptome.gdc_realn.bam 11178189579 BAM transcriptome harmonized CPTAC3 e4b00867-3ca0-4e30-84e7-ceb3d41c0d10 ad8e836e7dc2171fcd43dfead04df586 {"aliquot_tag": "ALQ_d15e1a5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.RNA-Seq.transcriptome.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.transcriptome.gdc_realn.bam 12725811872 BAM transcriptome harmonized CPTAC3 0e898059-418f-4c86-9ef2-763612a29b29 b6e7d7276139fa315275f351d98f537f {"aliquot_tag": "ALQ_cea1f26e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.WGS.A C3L-02352 CCRCC WGS tissue_normal CPT0104450006 CPT0104450006.WholeGenome.RP-1303.bam 55008001766 BAM submitted_aligned CPTAC3 b9201e6b-950c-4423-9d4f-bad36c48394b 37488ee750a8b79af4a00cc979a1f8e7 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.WGS.A.hg38 C3L-02352 CCRCC WGS tissue_normal CPT0104450006 50d2ab08-0ec8-4774-9abb-b4c4964fdefb_wgs_gdc_realn.bam 81129354528 BAM harmonized CPTAC3 ec886303-63b6-49b2-99d1-d651eb696439 dff02ab66a5e32729dc6b5611d32f3c5 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.WGS.N C3L-02352 CCRCC WGS blood_normal CPT0105130002 CPT0105130002.WholeGenome.RP-1303.bam 65072264653 BAM submitted_aligned CPTAC3 3a119064-3def-4c81-9a53-7ae2fb8e3aad 953835fae5220d29ed3f9e34a0bcd507 {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02352.WGS.N.hg38 C3L-02352 CCRCC WGS blood_normal CPT0105130002 f429c925-dfb7-4760-873a-1d0867a8bd6f_wgs_gdc_realn.bam 95264081073 BAM harmonized CPTAC3 06b372b5-e9b9-4939-a23c-1ce83e676a17 149f237c4588bdc516ff5996d57e6004 {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02352.WGS.T C3L-02352 CCRCC WGS tumor CPT0104430009 CPT0104430009.WholeGenome.RP-1303.bam 59291053649 BAM submitted_aligned CPTAC3 c5a78924-4dbf-4900-808e-69f138924259 5b5e50225d0b9ababc99956a9f4ed477 {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.WGS.T.hg38 C3L-02352 CCRCC WGS tumor CPT0104430009 d9b82491-cfe6-4e42-ad35-a96eaca300a4_wgs_gdc_realn.bam 92926793345 BAM harmonized CPTAC3 445dae7d-7407-43bb-973f-6caf8a3755da 426fe4a2df7ba82e9113f5fddb514937 {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.WXS.A C3L-02352 CCRCC WXS tissue_normal CPT0104450006 CPT0104450006.WholeExome.RP-1303.bam 29154106159 BAM submitted_aligned CPTAC3 2a3ff38f-6629-4da9-8c6b-c040370432cb da8ca55461511db23fee18df744a7496 {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.WXS.A.hg38 C3L-02352 CCRCC WXS tissue_normal CPT0104450006 50d2ab08-0ec8-4774-9abb-b4c4964fdefb_wxs_gdc_realn.bam 39139123223 BAM harmonized CPTAC3 ccec6fac-836f-42d2-81f9-74ccae84515b e4565f43d44d75cd0039e7aec979621b {"aliquot_tag": "ALQ_41e107ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02352.WXS.N C3L-02352 CCRCC WXS blood_normal CPT0105130002 CPT0105130002.WholeExome.RP-1303.bam 31382159207 BAM submitted_aligned CPTAC3 bea06abe-ff09-490d-8c87-dadf4f6a6b8d 2387df30d890915b442827560848b2e8 {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02352.WXS.N.hg38 C3L-02352 CCRCC WXS blood_normal CPT0105130002 f429c925-dfb7-4760-873a-1d0867a8bd6f_wxs_gdc_realn.bam 42832496505 BAM harmonized CPTAC3 88f63943-6eb2-4840-bf68-31c1d7aa419f 2721ba44f6cc6ba0ef0feb31d9b2913e {"aliquot_tag": "ALQ_3f76ac70", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02352.WXS.T C3L-02352 CCRCC WXS tumor CPT0104430009 CPT0104430009.WholeExome.RP-1303.bam 30644125657 BAM submitted_aligned CPTAC3 aec40feb-c216-44ab-9985-26feaadd3eaa a932b1eeff5fa92258093337b3a9833a {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02352.WXS.T.hg38 C3L-02352 CCRCC WXS tumor CPT0104430009 d9b82491-cfe6-4e42-ad35-a96eaca300a4_wxs_gdc_realn.bam 42240181352 BAM harmonized CPTAC3 15abc31a-8678-464c-98dc-beb2d4272928 ea7d70e3da3be036d53811d9b2c8dcef {"aliquot_tag": "ALQ_5e1eefff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02353.MethArray.Green.T C3L-02353 UCEC Methylation_Array tumor CPT0112780009 203219650218_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 636a7ec4-aa37-418a-84f7-baac6ea90adf 70bd6278f042a5d838da16f5ad0ba80f {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.MethArray.Red.T C3L-02353 UCEC Methylation_Array tumor CPT0112780009 203219650218_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 20a97099-26da-4ccc-97f1-81fbaf6e7d8d c8a199e1bbd25e93adfa1289b694f6ef {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.miRNA-Seq.A.hg38 C3L-02353 UCEC miRNA-Seq tissue_normal CPT0112790006 a81c2a9d-7d8d-47bd-a113-3e5adfd624be_mirnaseq_gdc_realn.bam 367693085 BAM harmonized CPTAC3 6668e34e-b55d-4ab1-b573-4d6a38f6ca84 ff3dba4307dac71530d025438e02622c {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.miRNA-Seq.S17_L002_R1.A C3L-02353 UCEC miRNA-Seq tissue_normal CPT0112790006 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L002_R1_001.unaln.bam 329904284 BAM S17_L002_R1 submitted_unaligned CPTAC3 61b6f99e-5cb2-4a62-9b4b-76f0e1a4cc80 c5a943fbed3615666f60d9ecaff19dde {"aliquot_tag": "ALQ_adffadc5", "sample": "S17", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.miRNA-Seq.S26_L003_R1.T C3L-02353 UCEC miRNA-Seq tumor CPT0112780006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGAGC_S26_L003_R1_001.unaln.bam 205743821 BAM S26_L003_R1 submitted_unaligned CPTAC3 e1ded5b3-ee90-43e7-b108-2122fbbfbccc f7bdeecc926cfcc90b82616bcb6614ff {"aliquot_tag": "ALQ_909f8475", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.miRNA-Seq.T.hg38 C3L-02353 UCEC miRNA-Seq tumor CPT0112780006 e5bdfbae-b819-4cb0-b5ed-c2367eeff418_mirnaseq_gdc_realn.bam 224245670 BAM harmonized CPTAC3 ab4caeb7-ddbd-468b-a8d6-058c71120a4b 86895d9feccc35e40dea0c6898381041 {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.RNA-Seq.chimeric.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.chimeric.gdc_realn.bam 83066915 BAM chimeric harmonized CPTAC3 898f7587-f217-4fc0-9319-06e500ae24d7 ec79997790c215be0e63ef6c5f82a650 {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.RNA-Seq.chimeric.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.chimeric.gdc_realn.bam 36618092 BAM chimeric harmonized CPTAC3 9de8ff03-b55e-4fa2-9f54-da6f6a8cc408 e8a483b3ce75d91613c72262e2a4b67e {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.RNA-Seq.genomic.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.genomic.gdc_realn.bam 9811936457 BAM genomic harmonized CPTAC3 1ada8191-c981-4397-ba94-993e2ab3ada4 21f657a889f0aa630fe25505a3c116db {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.RNA-Seq.genomic.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.genomic.gdc_realn.bam 9987189514 BAM genomic harmonized CPTAC3 b9898452-9a8d-4515-8cb4-d4db83ff07eb 4809f69622d59abdab965a276365a714 {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.RNA-Seq.S14_L004_R1.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4648983028 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 fc5ae671-1623-40e6-91fa-46462bfd5231 d79b1f78dde1c0d1116d77b3ae79d208 {"aliquot_tag": "ALQ_909f8475", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.RNA-Seq.S14_L004_R2.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R2_001.fastq.gz 5062165421 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 5c918460-2c92-4a1c-9a8f-a7f16bb06db3 5c53901cbddc6eb1f092a273388252ff {"aliquot_tag": "ALQ_909f8475", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.RNA-Seq.S16_L006_R1.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R1_001.fastq.gz 4058155304 FASTQ S16_L006_R1 submitted_unaligned CPTAC3 276387f5-9cac-46d2-83b6-16832362c175 532999a1e55da30c892de7b9b034189f {"aliquot_tag": "ALQ_adffadc5", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.RNA-Seq.S16_L006_R2.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R2_001.fastq.gz 4203543250 FASTQ S16_L006_R2 submitted_unaligned CPTAC3 4e769a79-a59a-4fda-9c5b-a4515601051b 908d7e574f7e3413c4062408ab3bc880 {"aliquot_tag": "ALQ_adffadc5", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.RNA-Seq.transcriptome.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.transcriptome.gdc_realn.bam 9126514596 BAM transcriptome harmonized CPTAC3 6f892b7c-b044-46d6-988f-5019d66d8734 3cba538c39c82280ad598209e4291394 {"aliquot_tag": "ALQ_adffadc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.RNA-Seq.transcriptome.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.transcriptome.gdc_realn.bam 12559408944 BAM transcriptome harmonized CPTAC3 ee48e8fa-7243-416c-8022-86926bbe84f4 249613e74a877875c3c22cdb77d98440 {"aliquot_tag": "ALQ_909f8475", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.WGS.A C3L-02353 UCEC WGS tissue_normal CPT0112790009 CPT0112790009.WholeGenome.RP-1303.bam 60851765369 BAM submitted_aligned CPTAC3 2bbb0bb3-1b0f-4df6-a4ba-18555d280e82 16b5c806bd15efd86d587054f8e0f4ef {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.WGS.A.hg38 C3L-02353 UCEC WGS tissue_normal CPT0112790009 1d4863eb-7d77-4bbf-b072-15da9c2e0e2e_wgs_gdc_realn.bam 88376492161 BAM harmonized CPTAC3 de62c22e-0340-47cb-82f5-d914218d5f3a 4215a7e7eea29769bda60c50812afee6 {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.WGS.N C3L-02353 UCEC WGS blood_normal CPT0115200002 CPT0115200002.WholeGenome.RP-1303.bam 54855374304 BAM submitted_aligned CPTAC3 d4dc6dc0-e8f2-4058-9fa2-20bf8f2938a5 f7a1c70336d66e95924c522b67ace19d {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02353.WGS.N.hg38 C3L-02353 UCEC WGS blood_normal CPT0115200002 a1da5a03-5869-4637-8e25-fcfde6b1c44d_wgs_gdc_realn.bam 79464314258 BAM harmonized CPTAC3 9bd72b0d-cbcf-44c5-9754-347b65ff1a08 4eab04c7acf93da434b2f51311968b63 {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02353.WGS.T C3L-02353 UCEC WGS tumor CPT0112780009 CPT0112780009.WholeGenome.RP-1303.bam 55338911663 BAM submitted_aligned CPTAC3 0d160263-b3eb-400a-8973-9d1f96b31326 9a4571594cde20a387510c7d10ac55d4 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.WGS.T.hg38 C3L-02353 UCEC WGS tumor CPT0112780009 eaba55bc-5a4e-46dd-a05d-0fbf99748efc_wgs_gdc_realn.bam 79958282142 BAM harmonized CPTAC3 18199824-5792-44a1-990d-96ee74bce3df bc53fb3df91289caa5509cd7659d3b95 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.WXS.A C3L-02353 UCEC WXS tissue_normal CPT0112790009 CPT0112790009.WholeExome.RP-1303.bam 20112321662 BAM submitted_aligned CPTAC3 dd74ac87-a913-4048-82f7-8d1ca2cc9e2b e524397847da187abe170f5bd2e54219 {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.WXS.A.hg38 C3L-02353 UCEC WXS tissue_normal CPT0112790009 1d4863eb-7d77-4bbf-b072-15da9c2e0e2e_wxs_gdc_realn.bam 27922573828 BAM harmonized CPTAC3 4c912199-07a5-4741-b689-13516ba26b44 60f54fd097e2ebae8c44c28a95ea6926 {"aliquot_tag": "ALQ_3d40b054", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02353.WXS.N C3L-02353 UCEC WXS blood_normal CPT0115200002 CPT0115200002.WholeExome.RP-1303.bam 20086013222 BAM submitted_aligned CPTAC3 42477ce4-4e29-4fd2-a4d1-9724321a6098 f73446f4c20a98ac292738b10377f785 {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02353.WXS.N.hg38 C3L-02353 UCEC WXS blood_normal CPT0115200002 a1da5a03-5869-4637-8e25-fcfde6b1c44d_wxs_gdc_realn.bam 27935863339 BAM harmonized CPTAC3 81ab9aae-5ff1-4d04-b10b-663be77819f8 26786acd053011a649aaf3ba5d912d94 {"aliquot_tag": "ALQ_32e8a490", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02353.WXS.T C3L-02353 UCEC WXS tumor CPT0112780009 CPT0112780009.WholeExome.RP-1303.bam 21697249171 BAM submitted_aligned CPTAC3 15db6949-cc25-49dd-851c-a7c6612f056f 97aded6edfcc25402f8005ad010bbd22 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02353.WXS.T.hg38 C3L-02353 UCEC WXS tumor CPT0112780009 eaba55bc-5a4e-46dd-a05d-0fbf99748efc_wxs_gdc_realn.bam 29662414249 BAM harmonized CPTAC3 dcf067cc-e6b4-4c03-b331-8ee60fa42954 b4e843f3b3d33b8d9aedd1457c054930 {"aliquot_tag": "ALQ_2099e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.MethArray.Green.T C3L-02354 UCEC Methylation_Array tumor CPT0112910009 203027390028_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7dfe5ecc-1fb2-41fc-866b-6bb7cc59b8f5 b498fceb44f1e659a799b8ba6d93df1f {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.MethArray.Red.T C3L-02354 UCEC Methylation_Array tumor CPT0112910009 203027390028_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 6e268ae0-3d8c-4326-9358-333cbabc76a2 e96aa3e7a96034665c75b56780a4777e {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.miRNA-Seq.S38_L004_R1.T C3L-02354 UCEC miRNA-Seq tumor CPT0112910006 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L004_R1_001.unaln.bam 214749363 BAM S38_L004_R1 submitted_unaligned CPTAC3 d81426bb-55c0-4265-a4d9-c540351e7ecc ff2e0f97ee732d754bbdf9092b5630d0 {"aliquot_tag": "ALQ_a7858774", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.miRNA-Seq.T.hg38 C3L-02354 UCEC miRNA-Seq tumor CPT0112910006 4d0b18b4-fb4c-4089-a2dc-31bff22f14f3_mirnaseq_gdc_realn.bam 237309969 BAM harmonized CPTAC3 727e48a0-ab62-4d33-8e24-c43d6dee69cd 906ea125113d9d1f3d62f18055c078bf {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.chimeric.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.chimeric.gdc_realn.bam 44556437 BAM chimeric harmonized CPTAC3 ba2c9dde-5d52-455e-bf18-c5786b035c7b b076892c844a4ca411db259a33c3509a {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.chimeric.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.chimeric.gdc_realn.bam 250696193 BAM chimeric harmonized CPTAC3 ff83bce6-9177-4a4b-98ba-23d75e9c7626 fc7acba2d5f4f8fc990ed288ada8dc11 {"aliquot_tag": "ALQ_9251f48f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.genomic.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.genomic.gdc_realn.bam 8103799485 BAM genomic harmonized CPTAC3 b5507e4a-ffbe-426c-9372-70082daba314 38ddf643a2ad22bd29af18ef6122b775 {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.genomic.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.genomic.gdc_realn.bam 12372037636 BAM genomic harmonized CPTAC3 a7b06e4e-83b9-4e9c-b7bc-0a6aecf969fa 225befc43384c24fd7c20c07d0ef9edc {"aliquot_tag": "ALQ_9251f48f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.S18_L005_R1.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 4074053965 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 fb47a896-7af6-4e75-8fb6-81e608e926a0 20e0fa4830d52576fe800e66515dcaba {"aliquot_tag": "ALQ_a7858774", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.S18_L005_R2.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 4410879128 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 e026f8ff-6f40-48fb-91e3-68f6d41f297d 4d513305b3eb4332d5aac83a17d6e0d8 {"aliquot_tag": "ALQ_a7858774", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.S45_R1.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R1_001.fastq.gz 7815601613 FASTQ S45_R1 submitted_unaligned CPTAC3 44b88a32-d1ab-4d7f-9c47-62072e19a656 ec694cafcf61b6a27c01c9320acfa44b {"aliquot_tag": "ALQ_9251f48f", "sample": "S45", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.S45_R2.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R2_001.fastq.gz 8237727846 FASTQ S45_R2 submitted_unaligned CPTAC3 30b7005d-fa87-4f87-a9e3-cfeee234f17a 496b2c8a4488fdb10afbb22a9bff9ba4 {"aliquot_tag": "ALQ_9251f48f", "sample": "S45", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.transcriptome.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.transcriptome.gdc_realn.bam 10437789646 BAM transcriptome harmonized CPTAC3 3e0c3f5c-be53-40c9-b2b7-af78d9135b4d c5c7dab1987bb2575e029324d8525c97 {"aliquot_tag": "ALQ_a7858774", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.RNA-Seq.transcriptome.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.transcriptome.gdc_realn.bam 6725121368 BAM transcriptome harmonized CPTAC3 70727568-bcd9-4735-a272-95fe158f7015 068d4ecb10d1a2f458c8f92d5aee4940 {"aliquot_tag": "ALQ_9251f48f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.WGS.N C3L-02354 UCEC WGS blood_normal CPT0115210002 CPT0115210002.WholeGenome.RP-1303.bam 59514184589 BAM submitted_aligned CPTAC3 71c79ef7-a9b7-4207-9256-73fc0dd4057c 8aa4ccec42fe0771831084f528e4e7cb {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02354.WGS.N.hg38 C3L-02354 UCEC WGS blood_normal CPT0115210002 e719b2aa-01be-4930-94e1-0938b36ef53c_wgs_gdc_realn.bam 86806174458 BAM harmonized CPTAC3 879d8d6e-fc01-4c08-bc70-ca98ef1fa5d7 c7eb1f2f79a7f7b44aff3fa12fb23bb5 {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02354.WGS.T C3L-02354 UCEC WGS tumor CPT0112910009 CPT0112910009.WholeGenome.RP-1303.bam 66182749311 BAM submitted_aligned CPTAC3 62ea86c9-391d-4cfb-b251-6e707435a851 4b6a83cca39d1b421790b5e89f9bd5c5 {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.WGS.T.hg38 C3L-02354 UCEC WGS tumor CPT0112910009 41fa6fa9-57db-459a-b50a-6fb9d6ff8b77_wgs_gdc_realn.bam 97935154380 BAM harmonized CPTAC3 9dedae7f-92d8-459a-856e-2dbeac7f4ef6 4100148aee10e0363fc1673bf0112cbb {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.WXS.N C3L-02354 UCEC WXS blood_normal CPT0115210002 CPT0115210002.WholeExome.RP-1303.bam 41154449200 BAM submitted_aligned CPTAC3 d7fe90d9-72de-4a13-81fe-8445c102614c 4e2f5b5e62629be3cee556ee84d862d3 {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02354.WXS.N.hg38 C3L-02354 UCEC WXS blood_normal CPT0115210002 e719b2aa-01be-4930-94e1-0938b36ef53c_wxs_gdc_realn.bam 55356117739 BAM harmonized CPTAC3 08a84bd9-0c5d-4cf4-82ba-9d58d89dfaf8 0c4f93a5ef4d1aa6641bc6726f015c21 {"aliquot_tag": "ALQ_f888d20", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02354.WXS.T C3L-02354 UCEC WXS tumor CPT0112910009 CPT0112910009.WholeExome.RP-1303.bam 33451851051 BAM submitted_aligned CPTAC3 cf835804-bb72-4b71-ab35-be85f06da81a 5165d14acb013a93d9b636be3cc36f45 {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02354.WXS.T.hg38 C3L-02354 UCEC WXS tumor CPT0112910009 41fa6fa9-57db-459a-b50a-6fb9d6ff8b77_wxs_gdc_realn.bam 45361383285 BAM harmonized CPTAC3 be6cfd59-5662-40f8-a9d1-409d18549b4d adffb2f96945cf09d0cf619e80dda858 {"aliquot_tag": "ALQ_373a9ae5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.MethArray.Green.T C3L-02357 UCEC Methylation_Array tumor CPT0113330009 203219650006_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 12068004-8814-4a66-b9a4-cfaad73806ae 49f771eb7f86fda44653abbd9842c576 {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.MethArray.Red.T C3L-02357 UCEC Methylation_Array tumor CPT0113330009 203219650006_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a5d9a3bb-77a6-4695-ae2e-910caa1dc687 6acd8f00717e2f798651355acbf599aa {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.miRNA-Seq.S30_L003_R1.T C3L-02357 UCEC miRNA-Seq tumor CPT0113330006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACCGG_S30_L003_R1_001.unaln.bam 169174821 BAM S30_L003_R1 submitted_unaligned CPTAC3 d93d65f2-3f80-47ae-9994-c29245c4c057 6f068cfcd4ce37fdb9ebeed0c37a8071 {"aliquot_tag": "ALQ_daa9fcc6", "sample": "S30", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.miRNA-Seq.T.hg38 C3L-02357 UCEC miRNA-Seq tumor CPT0113330006 70453f22-e042-4d16-a50a-7f613cec41ba_mirnaseq_gdc_realn.bam 180900967 BAM harmonized CPTAC3 f765361c-1733-4c52-b242-2fc9a0fc8096 371fd4a7ea16cd875716c162e3c26d2a {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.chimeric.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.chimeric.gdc_realn.bam 23456565 BAM chimeric harmonized CPTAC3 8ec463a6-4af6-4131-a045-208fa1da5b5f dfc53f2c8ea4798a8d23a31e81dbd532 {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.chimeric.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.chimeric.gdc_realn.bam 210533007 BAM chimeric harmonized CPTAC3 21b604a6-5276-46ea-9fc9-2f0d9a30ea2f 6375489c7a51e1488e98dbb2584a2ae7 {"aliquot_tag": "ALQ_5ab17bff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.genomic.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.genomic.gdc_realn.bam 8007483794 BAM genomic harmonized CPTAC3 7fff9088-ab42-4cd4-926e-11e9232811db 52b7c87f0cbc7da3c2813292cdfce498 {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.genomic.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.genomic.gdc_realn.bam 9943880823 BAM genomic harmonized CPTAC3 cf5c8253-898a-4db8-8df1-bbea2276cb45 70751cc86847bc132602ac81c5c40c86 {"aliquot_tag": "ALQ_5ab17bff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.S11_L003_R1.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 3325096909 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 9de78dc5-bd69-4f6e-88ca-976587003124 725e19a2ccb7ee8cba21669cd7ec8acf {"aliquot_tag": "ALQ_daa9fcc6", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.S11_L003_R2.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 3636538136 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 9ed83cfd-1128-4782-89bc-98cfa1a103b2 2d9b225178c17b788310c1466ed7e879 {"aliquot_tag": "ALQ_daa9fcc6", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.S31_R1.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R1_001.fastq.gz 5995121292 FASTQ S31_R1 submitted_unaligned CPTAC3 611d4cdd-9cf9-4cc6-8e65-f29191cf1070 49951835f6dda2cc78ea3e6f625e02b0 {"aliquot_tag": "ALQ_5ab17bff", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.S31_R2.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R2_001.fastq.gz 6202429288 FASTQ S31_R2 submitted_unaligned CPTAC3 6448cb04-d671-43b9-86c0-81b68b092a57 37aec7ca90ffc861293e932b93fccbbb {"aliquot_tag": "ALQ_5ab17bff", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.transcriptome.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.transcriptome.gdc_realn.bam 11112633416 BAM transcriptome harmonized CPTAC3 e3e6a107-fc6e-420e-9476-2267ec54ca80 9567e5776d3f77fef1866156ba9f6419 {"aliquot_tag": "ALQ_daa9fcc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.RNA-Seq.transcriptome.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.transcriptome.gdc_realn.bam 4811628763 BAM transcriptome harmonized CPTAC3 4f9f153a-8693-4752-8be6-e3656e5d04af c68634653e77c7b33ce7f1b014ec8e96 {"aliquot_tag": "ALQ_5ab17bff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.WGS.N C3L-02357 UCEC WGS blood_normal CPT0115280002 CPT0115280002.WholeGenome.RP-1303.bam 56154592805 BAM submitted_aligned CPTAC3 4b061097-3159-410c-9325-e497e24ba551 47a4c051c0c1ad5b3a94c0e5d28b7153 {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02357.WGS.N.hg38 C3L-02357 UCEC WGS blood_normal CPT0115280002 69e9418e-fb8c-45aa-ab06-5ac6825b63d2_wgs_gdc_realn.bam 81027382280 BAM harmonized CPTAC3 9115dbbe-ef7e-4c69-aa6d-dd8f24ae0ed8 2332cacdfb41ff446a06f63afee8ce1f {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02357.WGS.T C3L-02357 UCEC WGS tumor CPT0113330009 CPT0113330009.WholeGenome.RP-1303.bam 56565914203 BAM submitted_aligned CPTAC3 08a59d25-484e-4eab-885e-3fd71620bbd9 e0838438c2776aaa7bc596ec5cf1b8eb {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.WGS.T.hg38 C3L-02357 UCEC WGS tumor CPT0113330009 f43f1826-ba38-4389-ac95-dd6097317421_wgs_gdc_realn.bam 81947339856 BAM harmonized CPTAC3 ccb32710-0918-43b0-907c-106e53ff2f0d c988a28d4341c91a71081c53bed8b4e1 {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.WXS.N C3L-02357 UCEC WXS blood_normal CPT0115280002 CPT0115280002.WholeExome.RP-1303.bam 23074836832 BAM submitted_aligned CPTAC3 61b9929a-b72a-4191-be0d-4abfa36f8a58 984b28cea486d46b4dfe1f0f631d1351 {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02357.WXS.N.hg38 C3L-02357 UCEC WXS blood_normal CPT0115280002 69e9418e-fb8c-45aa-ab06-5ac6825b63d2_wxs_gdc_realn.bam 32230346086 BAM harmonized CPTAC3 dbfdf524-d634-4cf3-b8c0-c770b02b3b00 c3a5c9953128536a71218fafa7d38180 {"aliquot_tag": "ALQ_298ef51", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02357.WXS.T C3L-02357 UCEC WXS tumor CPT0113330009 CPT0113330009.WholeExome.RP-1303.bam 26423189374 BAM submitted_aligned CPTAC3 7fc49caf-84bb-4c6e-9768-271230229fb2 230c3472e45c2b743540da4c078b0b39 {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02357.WXS.T.hg38 C3L-02357 UCEC WXS tumor CPT0113330009 f43f1826-ba38-4389-ac95-dd6097317421_wxs_gdc_realn.bam 35880744595 BAM harmonized CPTAC3 11071103-8409-4215-bc03-770f16b958c6 c97b6271e0ebe44afcb9916592afea9e {"aliquot_tag": "ALQ_4a16e157", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02358.MethArray.Green.A C3L-02358 LSCC Methylation_Array tissue_normal CPT0112730006 203219650005_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cb24ed95-c253-4206-b075-5490789a48c7 c397b301e87a5473dc032589be39c227 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.MethArray.Green.T C3L-02358 LSCC Methylation_Array tumor CPT0112720006 203219640157_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 31ef4dfa-c28c-41dd-8e89-294267689a7f 0921602b42d32c8ae3f9f133eb4c3641 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.MethArray.Red.A C3L-02358 LSCC Methylation_Array tissue_normal CPT0112730006 203219650005_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 fe089865-408f-43bb-95be-2883f3911a5c bd161f0865f29e2c185cc1a9f4a8e22e {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.MethArray.Red.T C3L-02358 LSCC Methylation_Array tumor CPT0112720006 203219640157_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 ed30634f-35eb-44a1-877e-867befbb5b22 28bd534f66a0ba4eacb92f3efde72284 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.miRNA-Seq.A.hg38 C3L-02358 LSCC miRNA-Seq tissue_normal CPT0112730009 fd109dc0-c9f8-4b5a-b407-058402036f38_mirnaseq_gdc_realn.bam 312113032 BAM harmonized CPTAC3 de6ca445-8ce3-4a03-9eed-22c55685a600 c6dcc10fa8d96c9f096a61f9eec29e78 {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.miRNA-Seq.S37_L002_R1.A C3L-02358 LSCC miRNA-Seq tissue_normal CPT0112730009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTAGCT_S37_L002_R1_001.unaln.bam 280456706 BAM S37_L002_R1 submitted_unaligned CPTAC3 145051dc-1b52-4fc5-9629-0b560bb96ff3 c0ffae98ba5a3a89be367b067d43377f {"aliquot_tag": "ALQ_77f0a8f5", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.miRNA-Seq.S7_L001_R1.T C3L-02358 LSCC miRNA-Seq tumor CPT0112720009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGATC_S7_L001_R1_001.unaln.bam 270114861 BAM S7_L001_R1 submitted_unaligned CPTAC3 73cb9001-5f01-4b2a-9705-f2766dfff138 b76be8f03452d9559297153a9c457652 {"aliquot_tag": "ALQ_4a908145", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.miRNA-Seq.T.hg38 C3L-02358 LSCC miRNA-Seq tumor CPT0112720009 eef7c418-ef4d-487a-9d2c-4ac0b7e9c357_mirnaseq_gdc_realn.bam 297063552 BAM harmonized CPTAC3 b951ff8c-218d-4821-8303-d5c88df2b0b3 960f757a9724e1a68c2b973bb36e03ca {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.RNA-Seq.chimeric.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.chimeric.gdc_realn.bam 30066335 BAM chimeric harmonized CPTAC3 c350d7e8-a202-442f-8db4-ee7e7ab86915 a9a356c9dbda1037ff70713512e3eaca {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.RNA-Seq.chimeric.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.chimeric.gdc_realn.bam 27268601 BAM chimeric harmonized CPTAC3 567ba9b3-4970-42e6-b2a5-1fbf429d1ab5 1fae13ea13166293ddbe8df62d06d206 {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.RNA-Seq.genomic.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.genomic.gdc_realn.bam 8192115138 BAM genomic harmonized CPTAC3 56712a0f-31c0-4651-96a5-809017a7d033 6ca1fa78d22be3ed715bb20f705af230 {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.RNA-Seq.genomic.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.genomic.gdc_realn.bam 7800820984 BAM genomic harmonized CPTAC3 64765784-71ac-4ea3-8095-014122fb1300 8b28392dd60c99629adb2c71eb366946 {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.RNA-Seq.S21_L006_R1.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R1_001.fastq.gz 3765277595 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 ecbf1693-e7ea-4827-9399-62f8aa51580c 6c94218c1b0d59f8f2d793adf64ca988 {"aliquot_tag": "ALQ_4a908145", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.RNA-Seq.S21_L006_R2.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R2_001.fastq.gz 3970405337 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 6a371efe-48bf-46c1-a0ec-1cbdf4ec213c 0c468c7fa7ea308b3db34501be28551c {"aliquot_tag": "ALQ_4a908145", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.RNA-Seq.S22_L006_R1.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R1_001.fastq.gz 3733619091 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 236bb774-3d11-4c6e-9176-e1eb0156fcff 498de41960f28b8a2419ace708778fd3 {"aliquot_tag": "ALQ_77f0a8f5", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.RNA-Seq.S22_L006_R2.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3864569121 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 115fe20f-5864-4c22-aea0-15508567ce43 5edecba1318b66101f47e089c53b2254 {"aliquot_tag": "ALQ_77f0a8f5", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.RNA-Seq.transcriptome.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.transcriptome.gdc_realn.bam 9392318007 BAM transcriptome harmonized CPTAC3 dc68af7d-8244-4eb7-95d7-97b710278ce6 80888d4acfc7c28d1bb72c9583e1bdb8 {"aliquot_tag": "ALQ_77f0a8f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.RNA-Seq.transcriptome.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.transcriptome.gdc_realn.bam 10677133217 BAM transcriptome harmonized CPTAC3 a72521ec-f8be-4ba7-9cc7-b2cc361fc00a 365e2f2c1892d780dddb64315d092714 {"aliquot_tag": "ALQ_4a908145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.WGS.A C3L-02358 LSCC WGS tissue_normal CPT0112730006 CPT0112730006.WholeGenome.RP-1303.bam 55630381245 BAM submitted_aligned CPTAC3 b3257c80-939e-401e-b391-a1ecd90ac8ba 5a8eba59ed2ec38768ffbfed66a836c7 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.WGS.A.hg38 C3L-02358 LSCC WGS tissue_normal CPT0112730006 dd68794f-b41b-46f5-baac-5876e3060f08_wgs_gdc_realn.bam 81486223975 BAM harmonized CPTAC3 644f9be9-44f3-42b1-8ebb-e5f8f6b43d2f 3d780b44022ef3c7e5eb3987d41361b6 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.WGS.N C3L-02358 LSCC WGS blood_normal CPT0115190002 CPT0115190002.WholeGenome.RP-1303.bam 59335862995 BAM submitted_aligned CPTAC3 61b7c1e7-8105-4398-876e-9a72b24e0ad0 bc7499cda4782cf78658bcb59fad32df {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02358.WGS.N.hg38 C3L-02358 LSCC WGS blood_normal CPT0115190002 2df2a777-76f3-43fd-8d48-ac283e79c4eb_wgs_gdc_realn.bam 85424473542 BAM harmonized CPTAC3 4c108047-55fd-4108-915e-3435a5fab0ce 37789587c07a798283fa00f445a50516 {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02358.WGS.T C3L-02358 LSCC WGS tumor CPT0112720006 CPT0112720006.WholeGenome.RP-1303.bam 56505081820 BAM submitted_aligned CPTAC3 b21fb503-fb2e-49df-aa4a-156209578493 b26020a933c53d9ce708c5468cbc7ff2 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.WGS.T.hg38 C3L-02358 LSCC WGS tumor CPT0112720006 61f5b700-0bb6-424d-aab5-ecf10d369c99_wgs_gdc_realn.bam 83009244570 BAM harmonized CPTAC3 6d651392-d678-43c2-9d62-4f8ebb90d33f c5edb0eae90d38df335749a5d51a4e24 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.WXS.A C3L-02358 LSCC WXS tissue_normal CPT0112730006 CPT0112730006.WholeExome.RP-1303.bam 43280775866 BAM submitted_aligned CPTAC3 64be547e-9c2e-46bf-b214-d58f4c699205 d9d1f103b6f91380fd6469cf84047710 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.WXS.A.hg38 C3L-02358 LSCC WXS tissue_normal CPT0112730006 dd68794f-b41b-46f5-baac-5876e3060f08_wxs_gdc_realn.bam 59387761626 BAM harmonized CPTAC3 c67747ab-b19d-4a1e-ae77-4f13e453abbd e74e78317d78dfbdfbfd0668165da522 {"aliquot_tag": "ALQ_e74fb564", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02358.WXS.N C3L-02358 LSCC WXS blood_normal CPT0115190002 CPT0115190002.WholeExome.RP-1303.bam 23475053704 BAM submitted_aligned CPTAC3 fe347554-ba2b-4d5c-bc9e-7ac5d63ba4bc 18ee5609062fca950eecdaadd5802b0a {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02358.WXS.N.hg38 C3L-02358 LSCC WXS blood_normal CPT0115190002 2df2a777-76f3-43fd-8d48-ac283e79c4eb_wxs_gdc_realn.bam 31835938786 BAM harmonized CPTAC3 55b76b44-854d-417f-a02f-eb7f21e51974 f108aefde9e9057cbf5459e777faeac3 {"aliquot_tag": "ALQ_b96cb44f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02358.WXS.T C3L-02358 LSCC WXS tumor CPT0112720006 CPT0112720006.WholeExome.RP-1303.bam 26532449288 BAM submitted_aligned CPTAC3 9a011bf9-9c2a-4723-b86b-453ff5da37ce 341f1dc709dd7704839ca414017f6a13 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02358.WXS.T.hg38 C3L-02358 LSCC WXS tumor CPT0112720006 61f5b700-0bb6-424d-aab5-ecf10d369c99_wxs_gdc_realn.bam 36520078239 BAM harmonized CPTAC3 b19b1144-5656-4d2a-82e2-923e2f43bfef 80f0d972083fd875a2b08d9a6ca63bc2 {"aliquot_tag": "ALQ_da2f9cd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.MethArray.Green.A C3L-02364 CCRCC Methylation_Array tissue_normal CPT0113280006 204930640024_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e5b02ee1-ba75-427b-a1ec-e307174028e1 b77e1cb3313b3c7a859cada53552b653 {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.MethArray.Green.T C3L-02364 CCRCC Methylation_Array tumor CPT0113260009 203220070171_R03C01_Grn.idat 13676219 IDAT Green NA CPTAC3 6e409d9a-cb88-47fc-ad98-6273705a35af 6c18f432b9d96f4a1f54d50f496d46d7 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.MethArray.Red.A C3L-02364 CCRCC Methylation_Array tissue_normal CPT0113280006 204930640024_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 722e1f57-dd04-4a24-ac0a-6bc83a2924bc 6df72a3698cfb4f788a0e72ef1d43f17 {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.MethArray.Red.T C3L-02364 CCRCC Methylation_Array tumor CPT0113260009 203220070171_R03C01_Red.idat 13676219 IDAT Red NA CPTAC3 c6b5aa80-8b67-4751-beb0-8fbf0fc9bd99 95a23b3b2665285cccf444c1d13d3671 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.miRNA-Seq.A.hg38 C3L-02364 CCRCC miRNA-Seq tissue_normal CPT0113280009 d14c8b6e-c5d2-46a4-8f6f-3bb7ba7de995_mirnaseq_gdc_realn.bam 256037566 BAM harmonized CPTAC3 06fae9cc-7961-40e6-9752-54f94e12dc37 94cce491a9020f772571a403d4d4a1ad {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.miRNA-Seq.S29_L003_R1.T C3L-02364 CCRCC miRNA-Seq tumor CPT0113260006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAACTA_S29_L003_R1_001.unaln.bam 290712857 BAM S29_L003_R1 submitted_unaligned CPTAC3 a1a0086f-3471-4b08-89c9-673cc988e3bd c5177460feec689e1c0d724bc410fdbb {"aliquot_tag": "ALQ_d915a013", "sample": "S29", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.miRNA-Seq.S6_L002_R1.A C3L-02364 CCRCC miRNA-Seq tissue_normal CPT0113280009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L002_R1_001.unaln.bam 234029528 BAM S6_L002_R1 submitted_unaligned CPTAC3 032eeb6f-c700-4742-a774-3937acd58766 908a655d6fe7a1a1b9d896fbbc126f93 {"aliquot_tag": "ALQ_f69a03e3", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.miRNA-Seq.T.hg38 C3L-02364 CCRCC miRNA-Seq tumor CPT0113260006 279eb787-d0d8-4ece-ab48-c23db4b7bfc5_mirnaseq_gdc_realn.bam 320699990 BAM harmonized CPTAC3 ef9d17f8-dd6a-4c0e-9bb2-cd7da24fd6c9 b36ff62fc11ded09a8d8c870331f47ad {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.RNA-Seq.chimeric.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.chimeric.gdc_realn.bam 150384525 BAM chimeric harmonized CPTAC3 400a2181-f03d-4ef9-b3d9-6c3466a54720 a30f209e04c849e2fd23d84510f3804a {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.RNA-Seq.chimeric.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.chimeric.gdc_realn.bam 30975094 BAM chimeric harmonized CPTAC3 d6f3517e-77b2-4830-8ecc-8b1cde182ba5 70e529813c7dd3a3e9b3d9f1c6a610cd {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.RNA-Seq.genomic.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.genomic.gdc_realn.bam 8366887850 BAM genomic harmonized CPTAC3 197708f8-3949-4d30-983c-7a61312f3980 bc4b8dbb07f660e2996bfb3548ba7438 {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.RNA-Seq.genomic.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.genomic.gdc_realn.bam 7650838719 BAM genomic harmonized CPTAC3 4d9c4a88-7c06-44cc-ab8d-6a9c775da850 955304ff688153cc3c4a147ca91372ee {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.RNA-Seq.S5_L004_R1.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R1_001.fastq.gz 3592581909 FASTQ S5_L004_R1 submitted_unaligned CPTAC3 0760a34f-9aea-4ff2-b483-d839ed122de2 fee70dafcc61ed2651ba9b5a4aeb2668 {"aliquot_tag": "ALQ_f69a03e3", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.RNA-Seq.S5_L004_R2.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R2_001.fastq.gz 3977423642 FASTQ S5_L004_R2 submitted_unaligned CPTAC3 0eef987f-3753-4acb-9eaf-a53b8ea4eadc 733367344938884f3c0d9d6d73fe696b {"aliquot_tag": "ALQ_f69a03e3", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.RNA-Seq.S9_L003_R1.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3451829844 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 5e5a9caa-7311-4fd9-b74f-88bfa77fd888 b3cb476a9832586c69a9e2dce05f699c {"aliquot_tag": "ALQ_d915a013", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.RNA-Seq.S9_L003_R2.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3820695719 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 383c1c61-a592-4c23-81cf-93b388dd9c49 3fb31b4b5706c911c0e4ef705ffe7e3a {"aliquot_tag": "ALQ_d915a013", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.RNA-Seq.transcriptome.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.transcriptome.gdc_realn.bam 8912448620 BAM transcriptome harmonized CPTAC3 5f1894ac-c6f0-4e16-b043-3130610b6651 ad822cc52e342f0cba3cca62e3d907ea {"aliquot_tag": "ALQ_f69a03e3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.RNA-Seq.transcriptome.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.transcriptome.gdc_realn.bam 8629429789 BAM transcriptome harmonized CPTAC3 ec7e390c-1f89-46fd-b90b-53394c15e64e 9a22c16339e5e3640c0889c71ef7dd79 {"aliquot_tag": "ALQ_d915a013", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.WGS.A C3L-02364 CCRCC WGS tissue_normal CPT0113280006 CPT0113280006.WholeGenome.RP-1303.bam 60983564762 BAM submitted_aligned CPTAC3 72f87f5c-9e87-4187-b9d4-81eac9befeb7 a9dffecf2c7f964ee70bd6b43e575077 {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.WGS.A.hg38 C3L-02364 CCRCC WGS tissue_normal CPT0113280006 a96ef00f-c92d-40cc-b40f-f804e9fd3b63_wgs_gdc_realn.bam 89049644192 BAM harmonized CPTAC3 9de6301d-0126-4bc9-93c4-977bbd40b927 6d268ee8458235dc266d7f8e3c0b21cc {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.WGS.N C3L-02364 CCRCC WGS blood_normal CPT0115270002 CPT0115270002.WholeGenome.RP-1303.bam 50169806576 BAM submitted_aligned CPTAC3 92678a26-775d-4c72-beb2-640e1697e1a5 f1800f7b09c3099a15fd62865888dfda {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02364.WGS.N.hg38 C3L-02364 CCRCC WGS blood_normal CPT0115270002 be8f1237-9410-41ce-b51f-f44bf6373a98_wgs_gdc_realn.bam 73309023961 BAM harmonized CPTAC3 72808c26-caba-4ebb-b603-dc372d801b98 6ff960cae442a4712e77f612520d77fd {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02364.WGS.T C3L-02364 CCRCC WGS tumor CPT0113260009 CPT0113260009.WholeGenome.RP-1303.bam 56560603145 BAM submitted_aligned CPTAC3 7132a0c2-b589-4f76-aadc-9ee695a27e5d a492ddcfbc07ac374a33752a33d2aea3 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.WGS.T.hg38 C3L-02364 CCRCC WGS tumor CPT0113260009 e132f354-c423-4c15-bc4b-20373f2f57b0_wgs_gdc_realn.bam 82234303992 BAM harmonized CPTAC3 a06b3fcd-7daf-4b3c-a823-935e4a5b929f afbb56a26fb6e69b78d5bb7284f3be2d {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.WXS.A C3L-02364 CCRCC WXS tissue_normal CPT0113280006 CPT0113280006.WholeExome.RP-1303.bam 21769874138 BAM submitted_aligned CPTAC3 886440c5-ae68-45e2-b530-b903eec66db8 99283496ed78b0d9b3648356bcf6f07c {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.WXS.A.hg38 C3L-02364 CCRCC WXS tissue_normal CPT0113280006 a96ef00f-c92d-40cc-b40f-f804e9fd3b63_wxs_gdc_realn.bam 30213100412 BAM harmonized CPTAC3 dca7c30b-5013-476b-9984-ba1479a7a21f 4bcbc10f17299754619e171ee6d9745c {"aliquot_tag": "ALQ_66251e72", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02364.WXS.N C3L-02364 CCRCC WXS blood_normal CPT0115270002 CPT0115270002.WholeExome.RP-1303.bam 21208894349 BAM submitted_aligned CPTAC3 bc041187-47a8-4fb8-9531-eb6fd2cb412b d27a97fc23248a5941ad44979d2035d7 {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02364.WXS.N.hg38 C3L-02364 CCRCC WXS blood_normal CPT0115270002 be8f1237-9410-41ce-b51f-f44bf6373a98_wxs_gdc_realn.bam 29379243534 BAM harmonized CPTAC3 afe5004f-2697-474a-b81e-f7987f7cd071 df581dc806287680128fb637eb526d05 {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02364.WXS.T C3L-02364 CCRCC WXS tumor CPT0113260009 CPT0113260009.WholeExome.RP-1303.bam 19066566800 BAM submitted_aligned CPTAC3 f95b60c0-6401-4e3a-9e3c-60ebbcc31cb2 0407b9f6d24dafaca6cb148598c7b6ed {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02364.WXS.T.hg38 C3L-02364 CCRCC WXS tumor CPT0113260009 e132f354-c423-4c15-bc4b-20373f2f57b0_wxs_gdc_realn.bam 26340453776 BAM harmonized CPTAC3 6aeae5c1-1438-4c81-b877-3fbc09c1a6da d627ccc95502c3d0f3077004127fe0e2 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.DUP_6a761e9e.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM submitted_aligned CPTAC3 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02365.DUP_6a761e9e.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM harmonized CPTAC3 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02365.MethArray.Green.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9c3593b4-6c5b-4da1-8084-a9d4dcce816f ee342bb20ebe602c5992e30e21836621 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.MethArray.Green.T C3L-02365 LUAD Methylation_Array tumor CPT0114840009 202234370079_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a6a029c9-907e-42bf-b35e-9327945ee385 6d7a82e273411bf0ba42c3138f6a6622 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.MethArray.Red.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 f777f75b-bbe5-44de-89d5-a303cd6b132c 32dbb653f900c4616e3f3646541972e7 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.MethArray.Red.T C3L-02365 LUAD Methylation_Array tumor CPT0114840009 202234370079_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3995c3b8-3964-4224-b659-0c75c5fdc6eb 4b957bcb7424e83c504cbd5df223ab2f {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.miRNA-Seq.A.hg38 C3L-02365 LUAD miRNA-Seq tissue_normal CPT0114880009 a445402e-df99-4c13-844d-139ca5d42455_mirnaseq_gdc_realn.bam 236498690 BAM harmonized CPTAC3 778c1ccc-3af5-443a-8e15-1b40b323147d cb4cbcf045faee59f5ea20588d1bbce5 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.miRNA-Seq.S2_L005_R1.A C3L-02365 LUAD miRNA-Seq tissue_normal CPT0114880009 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L005_R1_001.unaln.bam 209178672 BAM S2_L005_R1 submitted_unaligned CPTAC3 e40723fc-7241-4fea-a542-d005aefb664e 6bf6810149cfd06fea79b3cbbaa1b8d8 {"aliquot_tag": "ALQ_92a61e0b", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.miRNA-Seq.S45_L003_R1.T C3L-02365 LUAD miRNA-Seq tumor CPT0114840006 181119_UNC31-K00269_0165_AH27WCBBXY_GTTTCG_S45_L003_R1_001.unaln.bam 172876639 BAM S45_L003_R1 submitted_unaligned CPTAC3 5742bcae-2dd8-4a7c-aa6c-fc0c10061b1c 5ce11d1778eeb4f924e8cd2f5926a5fc {"aliquot_tag": "ALQ_c7e9ee9b", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.miRNA-Seq.T.hg38 C3L-02365 LUAD miRNA-Seq tumor CPT0114840006 bdaebd87-fa8f-46ea-8761-82bc2abebdb9_mirnaseq_gdc_realn.bam 185197459 BAM harmonized CPTAC3 3d24262b-a1e5-48e9-9b07-fcdd469027a5 774e5603bb70841319bacbdac843d472 {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.RNA-Seq.chimeric.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.chimeric.gdc_realn.bam 41680663 BAM chimeric harmonized CPTAC3 e49bb3f1-1603-44a5-a2bf-8472a52715c0 c2138312dcbe8c1d4ff0c454265d3089 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.RNA-Seq.chimeric.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.chimeric.gdc_realn.bam 186437140 BAM chimeric harmonized CPTAC3 4178b378-39a6-4f1f-8357-965ebd825b58 6a6c18e1ff076ca8cef8977ddc00d85f {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.RNA-Seq.genomic.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.genomic.gdc_realn.bam 8407803483 BAM genomic harmonized CPTAC3 ad425303-24db-4abd-be3f-7853e743c6e5 445c54d6153c268fd7b1fe8a2ea447f4 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.RNA-Seq.genomic.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.genomic.gdc_realn.bam 9610951003 BAM genomic harmonized CPTAC3 a5ccbff2-a184-4b71-a65a-8ef8bccf2f50 e593e582671b0f00ecfa18547678f40c {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.RNA-Seq.S14_L004_R1.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R1_001.fastq.gz 4055727794 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 def212c8-4bb1-491c-a15e-fa5497f6ce76 4f76ff6a92b4c3d7585295f876388638 {"aliquot_tag": "ALQ_c7e9ee9b", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.RNA-Seq.S14_L004_R2.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4579933959 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 aeea12ca-8e11-48ad-8e9e-1ffb0c0a489d 00b37d7a5075bba83d32a55ef6b0bb83 {"aliquot_tag": "ALQ_c7e9ee9b", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.RNA-Seq.S18_L005_R1.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4160773101 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 14b2e96f-9ac2-44ff-bf6f-2edd8b731c80 0ad019ad24ad132718a6ac326f1e0ef7 {"aliquot_tag": "ALQ_92a61e0b", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.RNA-Seq.S18_L005_R2.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4349949528 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 b09f37a7-3a9a-4f98-873d-d53d6502a79b f6e0fd433f183b2c5f4abd187c53f2e3 {"aliquot_tag": "ALQ_92a61e0b", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.RNA-Seq.transcriptome.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.transcriptome.gdc_realn.bam 9741811435 BAM transcriptome harmonized CPTAC3 75cdef9c-30e0-419e-aa03-fbc70cde4914 859222acea9e5817cfc8bd963868fcc4 {"aliquot_tag": "ALQ_92a61e0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.RNA-Seq.transcriptome.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.transcriptome.gdc_realn.bam 10349407018 BAM transcriptome harmonized CPTAC3 0fae204d-5eba-4e8a-900a-618e4adafb05 b104640d5c759197f4cab76e46d0de49 {"aliquot_tag": "ALQ_c7e9ee9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.WGS.A C3L-02365 LUAD WGS tissue_normal CPT0114880006 CPT0114880006.WholeGenome.RP-1303.bam 55743582468 BAM submitted_aligned CPTAC3 d6add0e5-4740-40c0-90d5-f76962a0c4eb 0c56eb89474a3529acc59f7996ab17b4 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.WGS.A.hg38 C3L-02365 LUAD WGS tissue_normal CPT0114880006 d06fc371-1140-4b9b-85dc-0f57abda4664_wgs_gdc_realn.bam 82765455584 BAM harmonized CPTAC3 39b8d8ac-9fee-492c-bead-e9d1cfce086d 164993c71c5c7b58215ede97ac6a7031 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.WGS.N C3L-02365 LUAD WGS blood_normal CPT0116900002 CPT0116900002.WholeGenome.RP-1303.bam 62636089173 BAM submitted_aligned CPTAC3 e1cf332e-62fa-4caa-b47c-c308f9f92d1a 18eae961fa0bbaf6b4b51fd6c678fbcf {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02365.WGS.N.hg38 C3L-02365 LUAD WGS blood_normal CPT0116900002 bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wgs_gdc_realn.bam 92748330856 BAM harmonized CPTAC3 5a832acb-f0ed-4bac-b73b-fe54daf62b1a ca29d9b33198612cfe8a9b6a0d601ea5 {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02365.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009 CPT0114840009.WholeGenome.RP-1303.bam 55967118343 BAM submitted_aligned CPTAC3 606c007e-32a3-485a-847f-cc691d1bb307 9eeb3954ef1adc9ca465f82600d214b5 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009 1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wgs_gdc_realn.bam 82750501676 BAM harmonized CPTAC3 cbafe4ae-36af-4011-9ce8-0ea290c6373b 95a7a0c9c06fa948b7980da609e08a47 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.WXS.A C3L-02365 LUAD WXS tissue_normal CPT0114880006 CPT0114880006.WholeExome.RP-1303.bam 33401060054 BAM submitted_aligned CPTAC3 b18e30e0-41f5-4761-812f-93a1f6a02b41 dec941d8db572fa44e2c2b6de58aefa0 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.WXS.A.hg38 C3L-02365 LUAD WXS tissue_normal CPT0114880006 d06fc371-1140-4b9b-85dc-0f57abda4664_wxs_gdc_realn.bam 44834783361 BAM harmonized CPTAC3 e57292ba-138c-4fda-bd41-6f45f211a0a2 c48da16cddcf07720d88d28edfd96d37 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02365.WXS.N C3L-02365 LUAD WXS blood_normal CPT0116900002 CPT0116900002.WholeExome.RP-1303.bam 34586669883 BAM submitted_aligned CPTAC3 d083462b-4a5e-40a6-b8a3-847eb89baac8 bb1f95584ad9665e15e79c7415b45950 {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02365.WXS.N.hg38 C3L-02365 LUAD WXS blood_normal CPT0116900002 bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wxs_gdc_realn.bam 45908325616 BAM harmonized CPTAC3 b32dc9a8-2412-4aaf-aa8c-1e87ac06598e 6ef2532b56ee033ab52b1772f0beb236 {"aliquot_tag": "ALQ_69c74ece", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02365.WXS.T C3L-02365 LUAD WXS tumor CPT0114840009 CPT0114840009.WholeExome.RP-1303.bam 40580681362 BAM submitted_aligned CPTAC3 91976792-69ae-4bd7-8eb3-62af07cc199d 4786188f056fb59d3daef1d7409455aa {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02365.WXS.T.hg38 C3L-02365 LUAD WXS tumor CPT0114840009 1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wxs_gdc_realn.bam 55216112491 BAM harmonized CPTAC3 9c7a472d-ee9a-4408-a8e1-08893843d913 b7902f76c9ca556e1160d80ac3863b8d {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02382.MethArray.Green.T C3L-02382 UCEC Methylation_Array tumor CPT0190700011 203561620085_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e7c5df1f-3ed8-42a9-9e21-5011e89d9318 4c52e3b6f906d760bb7007396b4e50f3 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.MethArray.Red.T C3L-02382 UCEC Methylation_Array tumor CPT0190700011 203561620085_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 cc54843c-6724-4848-bc0c-03f8dd0985eb 23e967a8e66f09a15912391e6fcf6ce3 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.miRNA-Seq.S12_L001_R1.T C3L-02382 UCEC miRNA-Seq tumor CPT0190700014 190508_UNC31-K00269_0215_BH7FYKBBXY_CTTGTA_S12_L001_R1_001.unaln.bam 282766675 BAM S12_L001_R1 submitted_unaligned CPTAC3 c7d1995c-cc95-4c2e-b6a3-50a6f91cc8ec 879c0d4f2e2fd0565724ed6f7be6a735 {"aliquot_tag": "ALQ_13809545", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.miRNA-Seq.T.hg38 C3L-02382 UCEC miRNA-Seq tumor CPT0190700014 b7dd3171-6eb8-48ee-b10e-3674d257be2a_mirnaseq_gdc_realn.bam 316802278 BAM harmonized CPTAC3 ea4889a0-9dba-4078-8146-706ca322afe5 f2481ddc9a964e2e3459f882073e6822 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.chimeric.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.chimeric.gdc_realn.bam 30771439 BAM chimeric harmonized CPTAC3 0d0d9e95-68a1-4d97-92e9-1a70eaaa6c8e 504eec6b6e7eae4c4584139bd1464276 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.chimeric.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.chimeric.gdc_realn.bam 237010281 BAM chimeric harmonized CPTAC3 a0ea0c8c-9a2c-46c3-9575-2b9be731ef95 23d03490905d3bbfa70effb5b8c0f821 {"aliquot_tag": "ALQ_f5b1a52b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.genomic.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.genomic.gdc_realn.bam 8285468783 BAM genomic harmonized CPTAC3 b8c373a4-1532-4087-a5dc-c52527e374d8 0ba42a578778093cea62df765b630b78 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.genomic.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.genomic.gdc_realn.bam 12932715279 BAM genomic harmonized CPTAC3 69a77c5f-5626-4442-a39b-99492372fc86 bbf0a28b3032a7715960739b0cec9fa0 {"aliquot_tag": "ALQ_f5b1a52b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.S16_L005_R1.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R1_001.fastq.gz 3952812170 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 7594d19b-2b59-4ea9-a5a9-ccea3d390086 e521e7e934646ac700b6ae69541ec5f3 {"aliquot_tag": "ALQ_13809545", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.S16_L005_R2.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R2_001.fastq.gz 4546673484 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 73028a48-123b-458e-aa5f-025e9bc8f7da 95a097558122ac343fea0525e00cb0a6 {"aliquot_tag": "ALQ_13809545", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.S64_R1.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R1_001.fastq.gz 8767665783 FASTQ S64_R1 submitted_unaligned CPTAC3 14dd1167-b8b7-48f7-b145-df38c9aceb23 335827e52a086af58c15051535fdde60 {"aliquot_tag": "ALQ_f5b1a52b", "sample": "S64", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.S64_R2.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R2_001.fastq.gz 9053086603 FASTQ S64_R2 submitted_unaligned CPTAC3 64e8f5a3-1cb1-4fb4-a1b2-e1bd00e4d449 a2b11403561bb662f6a4738f08e1fc10 {"aliquot_tag": "ALQ_f5b1a52b", "sample": "S64", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.transcriptome.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.transcriptome.gdc_realn.bam 10988164918 BAM transcriptome harmonized CPTAC3 6f5e689e-ec21-49ce-949b-649008e99d81 9e802007f8febb0a41e738b9334c0648 {"aliquot_tag": "ALQ_13809545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.RNA-Seq.transcriptome.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.transcriptome.gdc_realn.bam 8790830157 BAM transcriptome harmonized CPTAC3 90ef0355-feeb-4f88-aedd-22b9b93d95e0 e1b8a6a50b3b6e3d2cd51e59cc309c07 {"aliquot_tag": "ALQ_f5b1a52b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.WGS.N C3L-02382 UCEC WGS blood_normal CPT0191130002 CPT0191130002.WholeGenome.RP-1303.bam 54101923574 BAM submitted_aligned CPTAC3 120d369a-fa8c-402d-ad1d-e3adb52e7029 9de6cb3644029272e3301bd3ae8f7da4 {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02382.WGS.N.hg38 C3L-02382 UCEC WGS blood_normal CPT0191130002 bd1f3127-c66e-4b93-999b-c6f353153827_wgs_gdc_realn.bam 78735814802 BAM harmonized CPTAC3 7e14a55f-0c7f-48b1-9169-d4492763577c 6800894ee977d8051df5fad8915e962c {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02382.WGS.T C3L-02382 UCEC WGS tumor CPT0190700011 CPT0190700011.WholeGenome.RP-1303.bam 83527488477 BAM submitted_aligned CPTAC3 198aef96-fa03-4e05-9170-c88c235c80a7 2a546d5d0b74e8aba2da66a2a30fc0f2 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.WGS.T.hg38 C3L-02382 UCEC WGS tumor CPT0190700011 a0d029e3-90a5-4e03-aa62-09f2ed987e5d_wgs_gdc_realn.bam 124363446875 BAM harmonized CPTAC3 3828a7e9-be1f-4e9a-8a2b-ced4905501b0 dee2d363da121f17c478ba572d448bd6 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.WXS.N C3L-02382 UCEC WXS blood_normal CPT0191130002 CPT0191130002.WholeExome.RP-1303.bam 23929495249 BAM submitted_aligned CPTAC3 91f42641-ddef-4a95-898c-09c0ca98d744 9afffb0b6dae3c2c89a6c8743bf1daa1 {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02382.WXS.N.hg38 C3L-02382 UCEC WXS blood_normal CPT0191130002 bd1f3127-c66e-4b93-999b-c6f353153827_wxs_gdc_realn.bam 32990252943 BAM harmonized CPTAC3 948bfb9d-6104-41b1-837d-eb9a430253d7 1d759b754d81f1cb274ad83f7b633ec6 {"aliquot_tag": "ALQ_d4769348", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02382.WXS.T C3L-02382 UCEC WXS tumor CPT0190700011 CPT0190700011.WholeExome.RP-1303.bam 27902696607 BAM submitted_aligned CPTAC3 5649cf6b-91df-4419-9328-29aad116bed9 0a8e82db985b214f19321738ba9630fb {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02382.WXS.T.hg38 C3L-02382 UCEC WXS tumor CPT0190700011 a0d029e3-90a5-4e03-aa62-09f2ed987e5d_wxs_gdc_realn.bam 39422681228 BAM harmonized CPTAC3 5a88a6ab-439c-4da9-b1f3-ad887ab5a23a 2d0c17602a170f180346b19d1283b6a7 {"aliquot_tag": "ALQ_63ea61ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.MethArray.Green.T C3L-02384 UCEC Methylation_Array tumor CPT0127980006 203027390091_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b56d405d-ae0a-4974-89fd-67e9bc76c618 d3f0b3ccb138cbea3e34e95f77242123 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.MethArray.Red.T C3L-02384 UCEC Methylation_Array tumor CPT0127980006 203027390091_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 e40cad2a-fdca-4a7d-83d2-2e56be15d6ac f3f63ed02889b8e7c93b01d0400fde92 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.miRNA-Seq.S33_L002_R1.T C3L-02384 UCEC miRNA-Seq tumor CPT0127980009 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L002_R1_001.unaln.bam 166767275 BAM S33_L002_R1 submitted_unaligned CPTAC3 ed3df266-b020-48e1-91e9-836bb9564e47 eae52df44a29f40ac9d1d1ea4addd6bd {"aliquot_tag": "ALQ_e69dd0d0", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.miRNA-Seq.T.hg38 C3L-02384 UCEC miRNA-Seq tumor CPT0127980009 04d89c11-18ec-4171-bfb5-55576d987cc2_mirnaseq_gdc_realn.bam 186018585 BAM harmonized CPTAC3 af799cdf-4b8f-4f53-86f6-8638599b758f d5692b3aad366df2667e5a7f41e2cca0 {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.chimeric.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.chimeric.gdc_realn.bam 62557681 BAM chimeric harmonized CPTAC3 2d0293fb-6e78-49dc-a24d-61af0c31df0f 63b16a618512d8ff37e888a1e7b38e13 {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.chimeric.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.chimeric.gdc_realn.bam 116999519 BAM chimeric harmonized CPTAC3 74124573-4c49-4ab8-8a27-d2506aa6f38d 8ecc792a37e158cab6bfbb2c8aeff556 {"aliquot_tag": "ALQ_9713202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.genomic.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.genomic.gdc_realn.bam 8441176057 BAM genomic harmonized CPTAC3 d1e6783d-50da-47d7-bab4-1655911889da db7e7ca3f5a467cb66e83c9645c62ab0 {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.genomic.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.genomic.gdc_realn.bam 5326529720 BAM genomic harmonized CPTAC3 c6bcc09c-0966-49bc-9561-4871f47d8a1e 5859ffbc96945e1c9a529a1097f15b68 {"aliquot_tag": "ALQ_9713202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.S12_L003_R1.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3725621544 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 bdfbbbe6-04e0-4e78-8479-ef149f9f1f24 dfda243609a21e7c48f13a547ba67549 {"aliquot_tag": "ALQ_e69dd0d0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.S12_L003_R2.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4020253681 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 7c24aefc-d4ad-4ee9-8525-7b13339c71f3 668e83ab8f083b0ab0ac95071a73ae3d {"aliquot_tag": "ALQ_e69dd0d0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.S91_R1.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R1_001.fastq.gz 2861677123 FASTQ S91_R1 submitted_unaligned CPTAC3 d8af1324-8bb2-46e3-bd40-5fca2817d841 dafc108e1893e09b9a34ed243247091a {"aliquot_tag": "ALQ_9713202", "sample": "S91", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.S91_R2.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R2_001.fastq.gz 2917925766 FASTQ S91_R2 submitted_unaligned CPTAC3 f0fc043c-a81d-4393-9780-eeb93e4f6332 8ba8d9b44d1674553ec65b245a720495 {"aliquot_tag": "ALQ_9713202", "sample": "S91", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.transcriptome.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.transcriptome.gdc_realn.bam 9628658441 BAM transcriptome harmonized CPTAC3 9111b4c1-ebdc-4f0f-8c88-4f6c154bdb31 db049619da95f2b4c2d10b8df537fd9c {"aliquot_tag": "ALQ_e69dd0d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.RNA-Seq.transcriptome.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.transcriptome.gdc_realn.bam 2386084925 BAM transcriptome harmonized CPTAC3 3c167622-d2b7-40da-a602-86837cbe5631 f36b41c3743909a101ade3fcf991e018 {"aliquot_tag": "ALQ_9713202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.WGS.N C3L-02384 UCEC WGS blood_normal CPT0128070002 CPT0128070002.WholeGenome.RP-1303.bam 65148791648 BAM submitted_aligned CPTAC3 9e277088-2781-43dc-9ac3-d19ab86a351e 252ffb0ef006b670d0fe13d2c56f2e95 {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02384.WGS.N.hg38 C3L-02384 UCEC WGS blood_normal CPT0128070002 792b7e93-6bc8-44fa-a854-dbb0f3dda028_wgs_gdc_realn.bam 95396220753 BAM harmonized CPTAC3 400e122b-e3cd-4182-b102-890253b8025e ebb7bcf02816f47f6df542da1bb3db98 {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02384.WGS.T C3L-02384 UCEC WGS tumor CPT0127980006 CPT0127980006.WholeGenome.RP-1303.bam 59029359103 BAM submitted_aligned CPTAC3 66156160-234c-4c13-91f0-dfee89f1b8a9 ba516f274a477224cb4030f844a93a12 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.WGS.T.hg38 C3L-02384 UCEC WGS tumor CPT0127980006 a2c0f4db-6913-4e6f-8693-0d243546eb12_wgs_gdc_realn.bam 84611129500 BAM harmonized CPTAC3 22c59457-edc6-4635-9a99-041c100ba03f 5b6727e7f2e559b4d71f221344d7b759 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.WXS.N C3L-02384 UCEC WXS blood_normal CPT0128070002 CPT0128070002.WholeExome.RP-1303.bam 33689751371 BAM submitted_aligned CPTAC3 a47c1eac-c5ee-47b6-885b-ee76be34a761 f4bede1bc8e722c924baf8e5d15be35f {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02384.WXS.N.hg38 C3L-02384 UCEC WXS blood_normal CPT0128070002 792b7e93-6bc8-44fa-a854-dbb0f3dda028_wxs_gdc_realn.bam 45175975215 BAM harmonized CPTAC3 e1325f27-84f5-481a-976a-bf7461e55487 f302598605b5c5cb1f65f3d1c34e9987 {"aliquot_tag": "ALQ_2258bfa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02384.WXS.T C3L-02384 UCEC WXS tumor CPT0127980006 CPT0127980006.WholeExome.RP-1303.bam 26154182968 BAM submitted_aligned CPTAC3 d6289ca6-8982-4e11-861d-a7ea79b0945f 8540eb669f3b5a53e6fa21be61038052 {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02384.WXS.T.hg38 C3L-02384 UCEC WXS tumor CPT0127980006 a2c0f4db-6913-4e6f-8693-0d243546eb12_wxs_gdc_realn.bam 35063984518 BAM harmonized CPTAC3 7ce6af67-03a5-45b3-a81c-a73c4f1d2310 f17e2137ac6ee7b7425c92ba9d94e5de {"aliquot_tag": "ALQ_7622cd41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.MethArray.Green.T C3L-02389 UCEC Methylation_Array tumor CPT0203040011 203561620095_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 53001908-355b-4d0c-8eff-bc3ae13815e9 4c361d4e5fb8d45e5b96face67652bc9 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.MethArray.Red.T C3L-02389 UCEC Methylation_Array tumor CPT0203040011 203561620095_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5460a05d-f51f-42cf-9f1a-14690bd67981 bdc18df3d5504381d02e8aa4a429bccb {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.miRNA-Seq.S12_L003_R1.T C3L-02389 UCEC miRNA-Seq tumor CPT0203040014 190508_UNC31-K00269_0215_BH7FYKBBXY_CTTGTA_S12_L003_R1_001.unaln.bam 224519411 BAM S12_L003_R1 submitted_unaligned CPTAC3 b31f4018-7b95-4b8f-9757-6db5d67a526c e1eb27dfee08f4b9141a53b5aaab2e4d {"aliquot_tag": "ALQ_ec2f3e4e", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.miRNA-Seq.T.hg38 C3L-02389 UCEC miRNA-Seq tumor CPT0203040014 8931bc71-26ff-46ba-9a69-2584634bd34f_mirnaseq_gdc_realn.bam 259332228 BAM harmonized CPTAC3 d310888b-bfa0-49e4-aca4-b049ae4bcd47 4e673b5f500a8a7b5253ae843152775c {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.chimeric.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.chimeric.gdc_realn.bam 33600832 BAM chimeric harmonized CPTAC3 177bd8ed-b12a-42fb-9930-a924374f6d88 32bada291b61d54c4c9a500eeb3cc608 {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.chimeric.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.chimeric.gdc_realn.bam 105359826 BAM chimeric harmonized CPTAC3 71b16b63-d16f-498c-9a65-a3b47ff668f0 0250b22d60e6e838f18f25a72b7da3fb {"aliquot_tag": "ALQ_ff9ea8e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.genomic.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.genomic.gdc_realn.bam 8039571121 BAM genomic harmonized CPTAC3 28516c3e-6b11-4c9e-ab00-ec4d6f6c328a 4a2effff2f6395115c3d615fa65912e1 {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.genomic.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.genomic.gdc_realn.bam 6879574423 BAM genomic harmonized CPTAC3 8f65b959-8297-463c-b835-4dde2863cf06 7ef48e9a6e8b53e4f01c3bc7d66bde32 {"aliquot_tag": "ALQ_ff9ea8e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.S32_L008_R1.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R1_001.fastq.gz 3891701366 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 0a6a3cf3-5b8d-4120-9c9c-00967b9657cd a2b7ac7236e5a1036669e94573603b39 {"aliquot_tag": "ALQ_ec2f3e4e", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.S32_L008_R2.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R2_001.fastq.gz 4413028877 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 93f35bdd-dd49-4781-90cb-c27fc986b796 527493946f2e74606b920edaeda25615 {"aliquot_tag": "ALQ_ec2f3e4e", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.S64_R1.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R1_001.fastq.gz 5043750880 FASTQ S64_R1 submitted_unaligned CPTAC3 7d635c2f-0eb6-4678-adf9-5dac2bee265c b7582ceaf21844bca6b116871c946ef5 {"aliquot_tag": "ALQ_ff9ea8e0", "sample": "S64", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.S64_R2.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R2_001.fastq.gz 5159183647 FASTQ S64_R2 submitted_unaligned CPTAC3 bf456a4a-e97a-48a6-9275-d470e31224da 0168c1887f2b569ebfea5ad21b94194c {"aliquot_tag": "ALQ_ff9ea8e0", "sample": "S64", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.transcriptome.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.transcriptome.gdc_realn.bam 12099997474 BAM transcriptome harmonized CPTAC3 133339ae-5426-4928-bea4-f4793c6ae8eb e60d89afa0cf0928c1ee6de62723aeca {"aliquot_tag": "ALQ_ec2f3e4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.RNA-Seq.transcriptome.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.transcriptome.gdc_realn.bam 4694010963 BAM transcriptome harmonized CPTAC3 88bb095f-f5e9-4394-98f7-29344092c757 0c93c357349263c9e71c71dca6ea09c6 {"aliquot_tag": "ALQ_ff9ea8e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.WGS.N C3L-02389 UCEC WGS blood_normal CPT0203130002 CPT0203130002.WholeGenome.RP-1303.bam 76417288871 BAM submitted_aligned CPTAC3 b3099cef-6986-468f-b8a2-bfb1f4a6db59 d90815744eaedb5779e38729ac84b3d9 {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02389.WGS.N.hg38 C3L-02389 UCEC WGS blood_normal CPT0203130002 9a7657a7-f7d0-4df9-bd1a-fe708f683f78_wgs_gdc_realn.bam 110533470294 BAM harmonized CPTAC3 cbf88027-f2f7-41f6-954e-dac3b7e73e16 dd4236605ffd3ba38a2e99c9cf3c61fc {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02389.WGS.T C3L-02389 UCEC WGS tumor CPT0203040011 CPT0203040011.WholeGenome.RP-1303.bam 57890905829 BAM submitted_aligned CPTAC3 472ceb8a-cffb-4f8f-9e66-29bd453b5564 81b3476f1b86ac3b7c1a911a99f2a3a6 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.WGS.T.hg38 C3L-02389 UCEC WGS tumor CPT0203040011 cb67a9c4-89aa-48a8-8a01-5a7f991bc7a6_wgs_gdc_realn.bam 83403626473 BAM harmonized CPTAC3 348f3eeb-e418-4596-8915-c3423f148022 9545dbbc193c4e71f5af8bbf067f6ab1 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.WXS.N C3L-02389 UCEC WXS blood_normal CPT0203130002 CPT0203130002.WholeExome.RP-1303.bam 24845039155 BAM submitted_aligned CPTAC3 ee5c06c0-94a6-45e7-8ba5-27a4edee654c e89c4268159cf1d72480d43c33961225 {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02389.WXS.N.hg38 C3L-02389 UCEC WXS blood_normal CPT0203130002 9a7657a7-f7d0-4df9-bd1a-fe708f683f78_wxs_gdc_realn.bam 33628536417 BAM harmonized CPTAC3 36f2568e-ed7d-49aa-93d3-da5121e00e3c 655dc3d6a3bc932d88a80f991b6607be {"aliquot_tag": "ALQ_652ba58f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02389.WXS.T C3L-02389 UCEC WXS tumor CPT0203040011 CPT0203040011.WholeExome.RP-1303.bam 22979464870 BAM submitted_aligned CPTAC3 e2efa1f5-3e5b-46ba-858e-63ed2a7c707a 58117117d47e77f525281bce2651addb {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02389.WXS.T.hg38 C3L-02389 UCEC WXS tumor CPT0203040011 cb67a9c4-89aa-48a8-8a01-5a7f991bc7a6_wxs_gdc_realn.bam 32526533542 BAM harmonized CPTAC3 9e884511-c738-4ec3-8fe3-0f943b2bccbc ce94778b43d95c759a4e68257f93d5f1 {"aliquot_tag": "ALQ_9c45cac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.MethArray.Green.T C3L-02392 UCEC Methylation_Array tumor CPT0203250011 203561620050_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 06c46edc-9c77-4ac0-bd73-00983054dcf7 e6be69b16ce4ba1cfa4ad019a9622634 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.MethArray.Red.T C3L-02392 UCEC Methylation_Array tumor CPT0203250011 203561620050_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 66ea3b62-44bd-49cd-90db-5668ac564f48 ab2be831f6b209103ee77c5e1d83a995 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.miRNA-Seq.S14_L003_R1.T C3L-02392 UCEC miRNA-Seq tumor CPT0203250014 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTTCC_S14_L003_R1_001.unaln.bam 306285615 BAM S14_L003_R1 submitted_unaligned CPTAC3 d5b2a374-1951-4b68-90d2-8cec94de1de5 d8fc2307779a3b41c6ec78a71be5cdbe {"aliquot_tag": "ALQ_9c87b6f5", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.miRNA-Seq.T.hg38 C3L-02392 UCEC miRNA-Seq tumor CPT0203250014 98f63f77-f21e-4d66-a55d-1db0c2d62644_mirnaseq_gdc_realn.bam 348073174 BAM harmonized CPTAC3 a8d45753-8d97-428e-a33f-82370c958e19 e7d96324531e20f06e144a8068b82520 {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.chimeric.gdc_realn.bam 39585498 BAM chimeric harmonized CPTAC3 d6706fa6-602a-4820-b817-b6eb70f69d49 42e7a42d56b6a30552c3a1d47435d749 {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.chimeric.gdc_realn.bam 124798421 BAM chimeric harmonized CPTAC3 ebd847fb-7d54-4c8a-91a3-89c12112f796 f036a5e3a8a7b5c265855dcbd70030e6 {"aliquot_tag": "ALQ_8f36205b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.chimeric.gdc_realn.bam 294232459 BAM chimeric harmonized CPTAC3 6c77496c-de04-44b4-88c6-f385f394996d 64c80439f885a3af785c0e278db2e8ba {"aliquot_tag": "ALQ_61384177", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.genomic.gdc_realn.bam 8436125787 BAM genomic harmonized CPTAC3 2ec72315-c4c3-49e1-aa01-01308e4bec5f afce05edd52aae0e8f137cb229cb5c3d {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.genomic.gdc_realn.bam 6929352791 BAM genomic harmonized CPTAC3 54fc1b37-4fa0-4cb6-a60f-107698542b46 4a909a90a9c51e242092b3579145d68a {"aliquot_tag": "ALQ_8f36205b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.genomic.gdc_realn.bam 13609938970 BAM genomic harmonized CPTAC3 de68cd72-2ac6-41af-9eb3-28569f3e10f3 c53a0e793e002b66ef5ab35e98698ada {"aliquot_tag": "ALQ_61384177", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.S26_L007_R1.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R1_001.fastq.gz 3976832811 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 f602bb01-0d6a-49cb-a77c-1e571dd92e7f 7df3351043735cb1a6c6b2efb9fd419d {"aliquot_tag": "ALQ_9c87b6f5", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.S26_L007_R2.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R2_001.fastq.gz 4540670866 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 d2edd54a-21a9-45e2-8800-544e1da013d2 f38a453a50bf2a27582c66ec435d9fe3 {"aliquot_tag": "ALQ_9c87b6f5", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.S59_R1.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R1_001.fastq.gz 10612461282 FASTQ S59_R1 submitted_unaligned CPTAC3 549723fd-6176-4acf-9351-7cbd8f12b82a 337e4472a9b66db047c4730a12f6d177 {"aliquot_tag": "ALQ_61384177", "sample": "S59", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.S59_R2.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R2_001.fastq.gz 10915270082 FASTQ S59_R2 submitted_unaligned CPTAC3 e91b958f-36e1-42c7-9975-45e8931ae219 fe3accca0a7add31a5dac1bd83e290ff {"aliquot_tag": "ALQ_61384177", "sample": "S59", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.S84_R1.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R1_001.fastq.gz 4227738116 FASTQ S84_R1 submitted_unaligned CPTAC3 8a02a875-b2b5-4678-936a-7b4790b44630 8d1f3d9d723a8d6a7226f40daa37c656 {"aliquot_tag": "ALQ_8f36205b", "sample": "S84", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.S84_R2.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R2_001.fastq.gz 4428759113 FASTQ S84_R2 submitted_unaligned CPTAC3 45263705-c7ff-429a-ba1b-3b47c0249872 12f48b0c6c46b24104cd48b64586e298 {"aliquot_tag": "ALQ_8f36205b", "sample": "S84", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.transcriptome.gdc_realn.bam 11385858289 BAM transcriptome harmonized CPTAC3 77e0e791-bbe5-480c-9596-5102172d7570 e4b5d790efbda652f1c8fde1264331c6 {"aliquot_tag": "ALQ_9c87b6f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.transcriptome.gdc_realn.bam 4004495471 BAM transcriptome harmonized CPTAC3 be27f16f-d9d4-4fc6-b311-1d766070da12 eae15bd7e365882b12900ac5137c6161 {"aliquot_tag": "ALQ_8f36205b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.transcriptome.gdc_realn.bam 9817117083 BAM transcriptome harmonized CPTAC3 0f1b3be9-794b-42e3-a96d-5a97ff038258 cd33d4097f47df62330f79672596143b {"aliquot_tag": "ALQ_61384177", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.WGS.N C3L-02392 UCEC WGS blood_normal CPT0203310002 CPT0203310002.WholeGenome.RP-1303.bam 73986187364 BAM submitted_aligned CPTAC3 0fec6ec2-a474-4088-a9c6-26f8d36fcdbd f343762118285683c7b2470ea51bd06b {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02392.WGS.N.hg38 C3L-02392 UCEC WGS blood_normal CPT0203310002 ebccbb2e-028d-40f4-8880-6dd3967edde8_wgs_gdc_realn.bam 107766832826 BAM harmonized CPTAC3 82831af9-d6ec-4673-8440-5cf41005227a de7df6ccd37ea45f0ba58b725fed2770 {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02392.WGS.T C3L-02392 UCEC WGS tumor CPT0203250011 CPT0203250011.WholeGenome.RP-1303.bam 80150789306 BAM submitted_aligned CPTAC3 143f0cc4-2c83-4fc3-8de0-c263ad3228f4 61311157786296a7c87c4f1739960556 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.WGS.T.hg38 C3L-02392 UCEC WGS tumor CPT0203250011 c964c60c-be35-45c6-b7a7-12b7fb3622f5_wgs_gdc_realn.bam 117962729732 BAM harmonized CPTAC3 6d07581d-a14e-44f3-98b7-af5d6eccd861 b187a01d2d09e8303d58c84ed76fbb51 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.WXS.N C3L-02392 UCEC WXS blood_normal CPT0203310002 CPT0203310002.WholeExome.RP-1303.bam 22866265523 BAM submitted_aligned CPTAC3 b2b349b6-2afe-4e1d-b868-86329323d8d5 07eb2fe64260a3df5317968084d18d02 {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02392.WXS.N.hg38 C3L-02392 UCEC WXS blood_normal CPT0203310002 ebccbb2e-028d-40f4-8880-6dd3967edde8_wxs_gdc_realn.bam 31542407905 BAM harmonized CPTAC3 5688d8f9-1b32-4fc7-b6e8-585e30a9974a b6d37ca2804ff800b5ea449b8abc7b62 {"aliquot_tag": "ALQ_522357e4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02392.WXS.T C3L-02392 UCEC WXS tumor CPT0203250011 CPT0203250011.WholeExome.RP-1303.bam 26963643435 BAM submitted_aligned CPTAC3 7676d548-26f5-45d8-b455-2e6842eda68d ccc04ceab181809b5704a1dfae2c493e {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02392.WXS.T.hg38 C3L-02392 UCEC WXS tumor CPT0203250011 c964c60c-be35-45c6-b7a7-12b7fb3622f5_wxs_gdc_realn.bam 37850151190 BAM harmonized CPTAC3 ad48d8e4-cd04-441f-9621-a51d3cd0a1bc 425a3ea6148684d25abee5691fb6a165 {"aliquot_tag": "ALQ_eced427a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.MethArray.Green.T C3L-02395 UCEC Methylation_Array tumor CPT0128080006 203219670106_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c19eb287-4e28-4a23-a114-65e9f7da9c88 f8e831883f1d190971338de4d1d4f016 {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.MethArray.Red.T C3L-02395 UCEC Methylation_Array tumor CPT0128080006 203219670106_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 5fe79bbe-f9dc-4177-91b5-149dd8eacb7e 8147494086163c437bae731aacb5ad9d {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.miRNA-Seq.S39_L002_R1.T C3L-02395 UCEC miRNA-Seq tumor CPT0128080009 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 318814920 BAM S39_L002_R1 submitted_unaligned CPTAC3 8b53fc32-0ed2-45f5-b53f-1027e3383066 2325ab3fa630347199f88779cd35aa8c {"aliquot_tag": "ALQ_37daf1f1", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.miRNA-Seq.T.hg38 C3L-02395 UCEC miRNA-Seq tumor CPT0128080009 475c7dbf-1d2a-4bef-b70f-ba0c2ac1b536_mirnaseq_gdc_realn.bam 360959277 BAM harmonized CPTAC3 626edd29-b44f-4b49-830d-98bcdd488a16 e5b1838722cecebf01eef4dac8360b35 {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.chimeric.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.chimeric.gdc_realn.bam 104139959 BAM chimeric harmonized CPTAC3 e9ece0ea-ab1b-44ab-96c6-03e0b6705ed7 07901427d872f28d4be30277d32e7fcf {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.chimeric.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.chimeric.gdc_realn.bam 292196655 BAM chimeric harmonized CPTAC3 08c504cb-e102-4090-b75e-918d1edc7452 34ab50829340ee749a8a7510b5443aa8 {"aliquot_tag": "ALQ_4615073", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.genomic.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.genomic.gdc_realn.bam 9273609301 BAM genomic harmonized CPTAC3 58185e0c-ee16-4dcf-8c7d-98280b19f2d6 e5bc2957f0510924f183ebd5622b7e45 {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.genomic.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.genomic.gdc_realn.bam 11489401406 BAM genomic harmonized CPTAC3 1cb25c23-95ea-4f79-b199-7abc32c21046 022d88a9ca7bb587559a0024cb281340 {"aliquot_tag": "ALQ_4615073", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.S2_L001_R1.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R1_001.fastq.gz 4075314808 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 8c397a94-8db3-4dfa-b835-89d7a2222100 3583ad79ae2268aef2173bc54cd9928c {"aliquot_tag": "ALQ_37daf1f1", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.S2_L001_R2.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R2_001.fastq.gz 4378812266 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 182ef355-f6af-4b1f-b04b-caeab03bc32a 5067ba6ea9d033dcabe20dd3e23262c2 {"aliquot_tag": "ALQ_37daf1f1", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.S77_R1.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R1_001.fastq.gz 6758181511 FASTQ S77_R1 submitted_unaligned CPTAC3 157112b7-746c-4647-b4e6-f4607ce1518d e890f59a04fa43d1d323b629d4035e9a {"aliquot_tag": "ALQ_4615073", "sample": "S77", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.S77_R2.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R2_001.fastq.gz 6923704250 FASTQ S77_R2 submitted_unaligned CPTAC3 8f69879b-68a1-45d0-88af-b415dd5148bd b426d4831bfd598d4f225fb3c149569f {"aliquot_tag": "ALQ_4615073", "sample": "S77", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.transcriptome.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.transcriptome.gdc_realn.bam 10503120352 BAM transcriptome harmonized CPTAC3 105ab7e7-dc9b-427c-a7de-349749cd2ef2 952fb5fca4df1aad1fcccf813b5be9fa {"aliquot_tag": "ALQ_37daf1f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.RNA-Seq.transcriptome.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.transcriptome.gdc_realn.bam 7326396859 BAM transcriptome harmonized CPTAC3 7e36063a-0967-492c-9456-98cbf1c14370 ee36e2e0c3bf23dab0e6f9101a8a41a9 {"aliquot_tag": "ALQ_4615073", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.WGS.N C3L-02395 UCEC WGS blood_normal CPT0128130002 CPT0128130002.WholeGenome.RP-1303.bam 56471729280 BAM submitted_aligned CPTAC3 f449d5f8-1089-4e62-be78-9cbb536df35f 216d4747224edf0d3a50c12ca2dc50b9 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02395.WGS.N.hg38 C3L-02395 UCEC WGS blood_normal CPT0128130002 853593c3-09dc-4248-8661-55e1babe4789_wgs_gdc_realn.bam 82034365435 BAM harmonized CPTAC3 69c6d886-813e-4eab-8c49-96c206af8d9e 9793c0a23b7d2d18f03b94b899cf5e67 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02395.WGS.T C3L-02395 UCEC WGS tumor CPT0128080006 CPT0128080006.WholeGenome.RP-1303.bam 54605121368 BAM submitted_aligned CPTAC3 ec2988ee-5692-485e-96a5-691be6001592 cefbd64edc1602445ea4206069927eeb {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.WGS.T.hg38 C3L-02395 UCEC WGS tumor CPT0128080006 c7f2be82-a75d-4f94-8476-5c2616ca8f44_wgs_gdc_realn.bam 78955859180 BAM harmonized CPTAC3 62ab4487-f909-4cf1-816f-f33a97e129e1 2a8d4f4ce0afdcae14defffca134fe80 {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.WXS.N C3L-02395 UCEC WXS blood_normal CPT0128130002 CPT0128130002.WholeExome.RP-1303.bam 32685080830 BAM submitted_aligned CPTAC3 ef48a9b9-d936-4bfb-b18c-02beee86f517 0e7e33d5de000be62a4acc4e103d8172 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02395.WXS.N.hg38 C3L-02395 UCEC WXS blood_normal CPT0128130002 853593c3-09dc-4248-8661-55e1babe4789_wxs_gdc_realn.bam 44142832862 BAM harmonized CPTAC3 9ad17334-4253-4778-999a-43f0f76dee16 e32336112ea8190c4253382b18c599f1 {"aliquot_tag": "ALQ_1c84cacd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02395.WXS.T C3L-02395 UCEC WXS tumor CPT0128080006 CPT0128080006.WholeExome.RP-1303.bam 43930218015 BAM submitted_aligned CPTAC3 f98f4786-5814-4396-8665-e929bbfe2a4f 15289575ec8faf4fabb311e386c33cf6 {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02395.WXS.T.hg38 C3L-02395 UCEC WXS tumor CPT0128080006 c7f2be82-a75d-4f94-8476-5c2616ca8f44_wxs_gdc_realn.bam 60285154957 BAM harmonized CPTAC3 c1691a08-375a-42f3-8a93-be32a3bb8cc2 6c3a72673237e3dac1fbd9cd7a0065dc {"aliquot_tag": "ALQ_a765ec60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.MethArray.Green.T C3L-02399 UCEC Methylation_Array tumor CPT0171090011 203561620086_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 267de460-4031-4ce0-9c7a-dc7d56f3be43 45991fb25a2eea9fdc612f18ba2f0ae8 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.MethArray.Red.T C3L-02399 UCEC Methylation_Array tumor CPT0171090011 203561620086_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 25109a5d-a460-4e65-8c7c-2a85896d3523 62f907aea40f374e4ef715f9d01772ff {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.miRNA-Seq.S6_L003_R1.T C3L-02399 UCEC miRNA-Seq tumor CPT0171090014 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L003_R1_001.unaln.bam 288860503 BAM S6_L003_R1 submitted_unaligned CPTAC3 8d3a0cdd-a3df-4fbc-93fc-f4b17d1d46b4 3fcefb5fb9774cb2d523bdd4c985a46b {"aliquot_tag": "ALQ_b068de0a", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.miRNA-Seq.T.hg38 C3L-02399 UCEC miRNA-Seq tumor CPT0171090014 805d2ed6-d90b-4ee1-a095-866c1c3ef389_mirnaseq_gdc_realn.bam 327347579 BAM harmonized CPTAC3 cc6a851c-8674-4227-8730-c609358edb58 df0c1304a9659dbdc4678fda3b9d53a6 {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.chimeric.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.chimeric.gdc_realn.bam 40114806 BAM chimeric harmonized CPTAC3 efc06264-ccc1-4dfa-80c7-00009752b6a7 398f47e3b87101ed760c10161a30985d {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.chimeric.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.chimeric.gdc_realn.bam 117106554 BAM chimeric harmonized CPTAC3 99b0e1a1-3af5-41d1-af84-71938a0a2415 2245cedb96732d15cf2a9233b6e05717 {"aliquot_tag": "ALQ_1f55aa10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.genomic.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.genomic.gdc_realn.bam 9393702873 BAM genomic harmonized CPTAC3 e81e8f6a-df44-4edc-9385-d8eb5dc9c676 1d0af22803b2dad8b2fcce13252b1e02 {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.genomic.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.genomic.gdc_realn.bam 7206822262 BAM genomic harmonized CPTAC3 9a9258f8-6e60-4a4f-abc0-b6e0431af87e 138db439c9ba79bca8bb6489fc1ca362 {"aliquot_tag": "ALQ_1f55aa10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.S2_L001_R1.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 4398111754 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 7308da99-6002-4e45-aeb6-6fd5a77acbf2 a4b52a688c4f8dcfa3d7eff0332e56a8 {"aliquot_tag": "ALQ_b068de0a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.S2_L001_R2.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 5135156175 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 927d6c15-eca7-4fe6-ae1a-5477fd5e0a3e be70974896a6cd2dbdaa6e686ce6fefd {"aliquot_tag": "ALQ_b068de0a", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.S32_R1.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R1_001.fastq.gz 3816611577 FASTQ S32_R1 submitted_unaligned CPTAC3 51161131-c337-4e75-b7e5-544711e49b17 2a8aa5fca7f09f4e58392e1d76b46727 {"aliquot_tag": "ALQ_1f55aa10", "sample": "S32", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.S32_R2.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R2_001.fastq.gz 3996686135 FASTQ S32_R2 submitted_unaligned CPTAC3 09f885ed-ce46-46c6-9e65-0539ce371540 98074fc92adf2a505f151156b1d03042 {"aliquot_tag": "ALQ_1f55aa10", "sample": "S32", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.transcriptome.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.transcriptome.gdc_realn.bam 8997794097 BAM transcriptome harmonized CPTAC3 947ac616-20d6-4de2-9658-73b976991e32 f89d49e288e24bc5bdf077e4f21e5bec {"aliquot_tag": "ALQ_b068de0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.RNA-Seq.transcriptome.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.transcriptome.gdc_realn.bam 2760125566 BAM transcriptome harmonized CPTAC3 6935143f-74ca-4185-b727-b9bf57763620 2bc7acb0a28e3852c895a0d7fe613ecf {"aliquot_tag": "ALQ_1f55aa10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.WGS.N C3L-02399 UCEC WGS blood_normal CPT0171120002 CPT0171120002.WholeGenome.RP-1303.bam 76046504188 BAM submitted_aligned CPTAC3 9dfde54b-1c8b-415d-b763-48cfbb298478 3ce5b1f045486273562410d76f9ff41c {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02399.WGS.N.hg38 C3L-02399 UCEC WGS blood_normal CPT0171120002 54efbba4-a6e0-4483-8b65-e5e89c443579_wgs_gdc_realn.bam 111890821546 BAM harmonized CPTAC3 c028d7e5-2439-456c-a58f-d69fc4d89fb2 845d42004f54a259eeae9a6d1ab21225 {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02399.WGS.T C3L-02399 UCEC WGS tumor CPT0171090011 CPT0171090011.WholeGenome.RP-1303.bam 96577309179 BAM submitted_aligned CPTAC3 bc6b906b-3f43-4f88-aa27-3c34728618ad efeb44e3d192c300c6e5ef70e77b4063 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.WGS.T.hg38 C3L-02399 UCEC WGS tumor CPT0171090011 e331d0d8-18dd-47b9-8cf5-11c7cfb1bac7_wgs_gdc_realn.bam 138886672821 BAM harmonized CPTAC3 035edfef-6cfc-406c-b938-dc8052f6b838 0853af48c542828d946461cf43375a09 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.WXS.N C3L-02399 UCEC WXS blood_normal CPT0171120002 CPT0171120002.WholeExome.RP-1303.bam 21727331308 BAM submitted_aligned CPTAC3 5f1fad1f-a63e-4978-8c92-645ce1a7146b e08bd755aaa5c88179ae1bf141e8c441 {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02399.WXS.N.hg38 C3L-02399 UCEC WXS blood_normal CPT0171120002 54efbba4-a6e0-4483-8b65-e5e89c443579_wxs_gdc_realn.bam 29873792399 BAM harmonized CPTAC3 690cd4b5-5d79-4462-9083-4b0266a78f95 fb8a9b6b8db66ca4742aff628e9a17e9 {"aliquot_tag": "ALQ_fc9ca8ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02399.WXS.T C3L-02399 UCEC WXS tumor CPT0171090011 CPT0171090011.WholeExome.RP-1303.bam 22653546494 BAM submitted_aligned CPTAC3 ee841dfe-c427-45ba-8297-730c08f87f11 8aa92b17ec750275b3df8187e0a135d3 {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02399.WXS.T.hg38 C3L-02399 UCEC WXS tumor CPT0171090011 e331d0d8-18dd-47b9-8cf5-11c7cfb1bac7_wxs_gdc_realn.bam 31550347331 BAM harmonized CPTAC3 3082ea2d-5d2f-45e8-bf28-71d1b67f017a 06dab7acf8dcb0b0e69210bc68d6f92a {"aliquot_tag": "ALQ_c0022a85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.MethArray.Green.T C3L-02403 UCEC Methylation_Array tumor CPT0203150011 203561450014_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c9bad069-94f6-4a4d-b9e6-e38ff3cd895e f5a4e8050a158a4671d7a1631a2550b3 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.MethArray.Red.T C3L-02403 UCEC Methylation_Array tumor CPT0203150011 203561450014_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 434ea9d3-4e8a-4377-9cdd-fb29cdb343d8 9a7109e2413b56a1e21711a44271b8f3 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.miRNA-Seq.S13_L003_R1.T C3L-02403 UCEC miRNA-Seq tumor CPT0203150014 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L003_R1_001.unaln.bam 206265894 BAM S13_L003_R1 submitted_unaligned CPTAC3 fc8ff9d0-d530-40ed-b772-7a3dd8d8a4a3 b0a2ce9b42c43262ffb45d65684d1019 {"aliquot_tag": "ALQ_1a13c45b", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.miRNA-Seq.T.hg38 C3L-02403 UCEC miRNA-Seq tumor CPT0203150014 d73f3409-b1b4-4ed2-af10-b9bb9a584df9_mirnaseq_gdc_realn.bam 234961009 BAM harmonized CPTAC3 80798e8a-36cb-47f3-aecb-f5c266f7afe0 11ec2a2e4d9dd6bd5f64fbb670bb5c0c {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.chimeric.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.chimeric.gdc_realn.bam 40460837 BAM chimeric harmonized CPTAC3 851586a6-f223-4154-89bb-5bede80b719b 4f8e0c7a71082c788ce33b9d7d93791f {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.chimeric.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.chimeric.gdc_realn.bam 169077099 BAM chimeric harmonized CPTAC3 ea66d6ee-56da-4a12-82c6-19e6865431c8 d915d20246ca38387d4b7c2c56673bb9 {"aliquot_tag": "ALQ_9a252f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.genomic.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.genomic.gdc_realn.bam 8699816364 BAM genomic harmonized CPTAC3 363dbaeb-cae7-4cd5-ad50-d813261ffb6f 32f8f566622ed861fa4deeccf6be23a4 {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.genomic.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.genomic.gdc_realn.bam 8676218517 BAM genomic harmonized CPTAC3 f9283581-47b1-4801-8886-b41be9324949 f2998cd4d46a8fd33dcfcb55f0d0eb4c {"aliquot_tag": "ALQ_9a252f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.S25_L007_R1.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R1_001.fastq.gz 4126823350 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 159a7980-cd45-4cd2-b34b-ef50471b0b29 9c9ce43ac4b9fb3e95538418d25af4a3 {"aliquot_tag": "ALQ_1a13c45b", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.S25_L007_R2.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R2_001.fastq.gz 4768518399 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 a9f1b062-5ffe-4b1c-b64d-ecb8388cce0c 19551ae313a2db8237dbc47918700438 {"aliquot_tag": "ALQ_1a13c45b", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.S43_R1.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R1_001.fastq.gz 5728380240 FASTQ S43_R1 submitted_unaligned CPTAC3 322072b6-7700-48f5-b5ab-3655f509b788 bbc626a61a4336df56f44d6687fa80bf {"aliquot_tag": "ALQ_9a252f5", "sample": "S43", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.S43_R2.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R2_001.fastq.gz 5900956870 FASTQ S43_R2 submitted_unaligned CPTAC3 0eee380c-e6dc-431b-84a9-3290f4082b69 7cfcef63e54a57eaa82cbd4880d84be1 {"aliquot_tag": "ALQ_9a252f5", "sample": "S43", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.transcriptome.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.transcriptome.gdc_realn.bam 10155811559 BAM transcriptome harmonized CPTAC3 8d0a6750-24b9-401d-be90-57066d096a4f 81735f02181f6b1b89397379c555c45a {"aliquot_tag": "ALQ_1a13c45b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.RNA-Seq.transcriptome.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.transcriptome.gdc_realn.bam 6327826848 BAM transcriptome harmonized CPTAC3 f1e1b9ed-1e2a-416c-86e6-4cd5232b396e 80cf92efc502a710082f08c03f9187c7 {"aliquot_tag": "ALQ_9a252f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.WGS.N C3L-02403 UCEC WGS blood_normal CPT0203210002 CPT0203210002.WholeGenome.RP-1303.bam 65867091611 BAM submitted_aligned CPTAC3 babe88b8-503e-49cf-a6cc-c8d3fa20d861 190969da6b268e50f090923d7d184278 {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02403.WGS.N.hg38 C3L-02403 UCEC WGS blood_normal CPT0203210002 ad7932ae-f64f-4d35-8b46-0e8bb5d5087f_wgs_gdc_realn.bam 96961690808 BAM harmonized CPTAC3 8d03e946-7b83-45b1-8574-c19c3e952aa5 c9297ad3eec4075546a8f46b763b1107 {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02403.WGS.T C3L-02403 UCEC WGS tumor CPT0203150011 CPT0203150011.WholeGenome.RP-1303.bam 63290257237 BAM submitted_aligned CPTAC3 d15d41aa-e289-49b0-9e57-3b501838c446 97f38cf586b880703931d0113d51f063 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.WGS.T.hg38 C3L-02403 UCEC WGS tumor CPT0203150011 a857187f-15f8-49bc-9166-45b3e10ec6c6_wgs_gdc_realn.bam 91363831167 BAM harmonized CPTAC3 39c69f25-cd23-4c3c-9973-786d07c2b55e d252c5a79bfec37051073ca8e7931b27 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.WXS.N C3L-02403 UCEC WXS blood_normal CPT0203210002 CPT0203210002.WholeExome.RP-1303.bam 21454741557 BAM submitted_aligned CPTAC3 8d9ed1d7-4068-41fa-885c-3ffe637986a8 d6170046f69ad9f673c21dc9870374af {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02403.WXS.N.hg38 C3L-02403 UCEC WXS blood_normal CPT0203210002 ad7932ae-f64f-4d35-8b46-0e8bb5d5087f_wxs_gdc_realn.bam 29505928192 BAM harmonized CPTAC3 8d04dffd-0af2-4cc3-9e85-858ab4042a2f cd0d755beda86ccad8d89a4ba6209f33 {"aliquot_tag": "ALQ_997f8441", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02403.WXS.T C3L-02403 UCEC WXS tumor CPT0203150011 CPT0203150011.WholeExome.RP-1303.bam 24256457391 BAM submitted_aligned CPTAC3 2040dd95-3e88-4462-b8fc-4249a5900629 afce1647e196ddb7caf65257e2574667 {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02403.WXS.T.hg38 C3L-02403 UCEC WXS tumor CPT0203150011 a857187f-15f8-49bc-9166-45b3e10ec6c6_wxs_gdc_realn.bam 34316268340 BAM harmonized CPTAC3 12a1a4d9-f784-4cc9-8e08-ea386016ba91 1d84af67391f6db82139e3c5b5b069ad {"aliquot_tag": "ALQ_6a7930d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.MethArray.Green.T C3L-02408 UCEC Methylation_Array tumor CPT0111720009 203219650177_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b2c769f8-8733-4732-a234-f318afcd74b8 376cac4beae2bbcaa20c2ce97be59c78 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.MethArray.Red.T C3L-02408 UCEC Methylation_Array tumor CPT0111720009 203219650177_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 2ecd84b4-0d3b-41bd-af88-e92eaa385228 e908796d810d1cbd307e5fee6d533612 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.miRNA-Seq.A.hg38 C3L-02408 UCEC miRNA-Seq tissue_normal CPT0111740009 3b2a3662-3977-4cbb-827a-7fdc6aa56c1f_mirnaseq_gdc_realn.bam 285241357 BAM harmonized CPTAC3 c6840c6d-3e7c-43d5-98e8-e24f7a123d4e e85f434dce6b12361d5a51ed8eb1d414 {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.miRNA-Seq.S11_L002_R1.T C3L-02408 UCEC miRNA-Seq tumor CPT0111720006 190108_UNC31-K00269_0176_AHYGLVBBXX_GGCTAC_S11_L002_R1_001.unaln.bam 247052897 BAM S11_L002_R1 submitted_unaligned CPTAC3 1f25db7e-0018-481d-b9be-b2881849bcc5 4b2ac11fbf66fd2a2a45ddb21667c3bc {"aliquot_tag": "ALQ_ebc78649", "sample": "S11", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.miRNA-Seq.S8_L004_R1.A C3L-02408 UCEC miRNA-Seq tissue_normal CPT0111740009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L004_R1_001.unaln.bam 246145605 BAM S8_L004_R1 submitted_unaligned CPTAC3 4c2f1a81-18eb-4a8a-9d1a-8152233d7e7f 39ee70ae2ad95ff11ce42f9c3b706ae5 {"aliquot_tag": "ALQ_f4386e78", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.miRNA-Seq.T.hg38 C3L-02408 UCEC miRNA-Seq tumor CPT0111720006 9b4b0a82-9325-4b9c-9be2-9b353cfcd4e8_mirnaseq_gdc_realn.bam 272785696 BAM harmonized CPTAC3 9b9ff7bf-67d7-42e3-af98-86c475e35f24 ed16929e119f17a3102b1d7ac568d559 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.chimeric.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.chimeric.gdc_realn.bam 35258140 BAM chimeric harmonized CPTAC3 ad1c8ff8-5b90-48ab-ad75-0d1d4651db8f df175658b65c1d3c7eaa0b336bbc447f {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.RNA-Seq.chimeric.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.chimeric.gdc_realn.bam 30316723 BAM chimeric harmonized CPTAC3 849b22d8-817b-475e-8e7b-acb7f4eaa82b 6f3b3af744fe33cff443808e0635e465 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.chimeric.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.chimeric.gdc_realn.bam 227827841 BAM chimeric harmonized CPTAC3 66591ef6-3235-4a80-8d06-a66c834f4d42 c0f276f3e9aac32433ce5a545eae22a0 {"aliquot_tag": "ALQ_6ea8e6a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.genomic.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.genomic.gdc_realn.bam 9136206198 BAM genomic harmonized CPTAC3 7fadfbc5-e316-45a1-82bd-d9fca3f0f75d e346aaa7a58ba2cb43d05ca893e9c1b0 {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.RNA-Seq.genomic.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.genomic.gdc_realn.bam 8919243947 BAM genomic harmonized CPTAC3 36f9ecd0-7160-41f0-8f44-84e923447e6c 2dd5ae6df8fdef8ebff6cc05bf80ecf1 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.genomic.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.genomic.gdc_realn.bam 13080026970 BAM genomic harmonized CPTAC3 2868cac3-8dc2-4ccb-9fb6-971506855b08 f0e222872fcf39a00a2b05f10af0e1a8 {"aliquot_tag": "ALQ_6ea8e6a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.S18_R1.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R1_001.fastq.gz 7861943248 FASTQ S18_R1 submitted_unaligned CPTAC3 6645664b-2f76-4807-a84c-808e824062b4 32b3dc424bd7224ffa0f79a51c99f097 {"aliquot_tag": "ALQ_6ea8e6a3", "sample": "S18", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.S18_R2.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R2_001.fastq.gz 8126142883 FASTQ S18_R2 submitted_unaligned CPTAC3 b09c5e8a-24d0-4060-bfd6-53fd3c01d2cd 889176ce4ceac70ab13b630e0e1592ce {"aliquot_tag": "ALQ_6ea8e6a3", "sample": "S18", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.S8_L008_R1.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3618134131 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 2b713127-596d-41f7-8332-764d2378b685 5086606664dd285b90ba559759a99bf9 {"aliquot_tag": "ALQ_f4386e78", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.RNA-Seq.S8_L008_R1.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3943217924 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 56d41787-3417-42a0-acae-f42e2f41e9ff 61841d7237e447c6cd811af52c775a0a {"aliquot_tag": "ALQ_ebc78649", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.S8_L008_R2.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R2_001.fastq.gz 3799526666 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 a3616b7f-20e4-420b-91ce-cb3e5ba405a1 bffe0c2619d87a4901b76a18770467dc {"aliquot_tag": "ALQ_f4386e78", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.RNA-Seq.S8_L008_R2.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 4537821882 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 ff70f9a0-0fc2-4619-83c6-43d206e6ce66 7420cb8f48b7a89b81c0cf1a070f3095 {"aliquot_tag": "ALQ_ebc78649", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.transcriptome.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.transcriptome.gdc_realn.bam 10744070449 BAM transcriptome harmonized CPTAC3 2d5f34df-2580-4031-bb8e-8dc8531796b3 bfc822a6dd54a4c12f9aab33dfa9be75 {"aliquot_tag": "ALQ_f4386e78", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.RNA-Seq.transcriptome.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.transcriptome.gdc_realn.bam 10678032368 BAM transcriptome harmonized CPTAC3 d3021dee-b7e0-49ee-899c-9ab242523c47 d53acc6cefda4c4140f73efec9b84923 {"aliquot_tag": "ALQ_ebc78649", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.RNA-Seq.transcriptome.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.transcriptome.gdc_realn.bam 8509813235 BAM transcriptome harmonized CPTAC3 aeb9cf46-05a2-40af-87a4-8a03794842d4 681ee66d3a6b4198b1a7ee1647bf55f1 {"aliquot_tag": "ALQ_6ea8e6a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.WGS.A C3L-02408 UCEC WGS tissue_normal CPT0111740006 CPT0111740006.WholeGenome.RP-1303.bam 56165100135 BAM submitted_aligned CPTAC3 bfb17cc4-9414-40d8-a474-b6e54a900ee0 4eb58c12a3773c57412bd4569f10b351 {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.WGS.A.hg38 C3L-02408 UCEC WGS tissue_normal CPT0111740006 7d3d60f8-567d-4d86-a1de-d81ef50070fe_wgs_gdc_realn.bam 82005546972 BAM harmonized CPTAC3 3f19116c-0210-40ac-b732-757527a5dffc 08c1fd033bd108a8279b45df9f09b89c {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.WGS.N C3L-02408 UCEC WGS blood_normal CPT0112800002 CPT0112800002.WholeGenome.RP-1303.bam 58626542745 BAM submitted_aligned CPTAC3 59284f6e-0390-4e7a-82a4-8aabff1fe604 0584f787a6cfe4b64b4199b5cd473d4b {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02408.WGS.N.hg38 C3L-02408 UCEC WGS blood_normal CPT0112800002 0cd0a614-c905-4945-ae49-8c107c22f762_wgs_gdc_realn.bam 85139358096 BAM harmonized CPTAC3 5f6b08b5-1ea4-46c8-bd06-cc9f71f063d8 633219ad1e1d794260dfc1748809a537 {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02408.WGS.T C3L-02408 UCEC WGS tumor CPT0111720009 CPT0111720009.WholeGenome.RP-1303.bam 61706663969 BAM submitted_aligned CPTAC3 a626e735-331f-4d11-abc9-9c8b7d5cdf39 854f372091f4ca8e6a8041fdd999ccf4 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.WGS.T.hg38 C3L-02408 UCEC WGS tumor CPT0111720009 655e2375-fe5a-4021-a349-8a352f35b623_wgs_gdc_realn.bam 90554360259 BAM harmonized CPTAC3 a84aa901-0853-446e-812a-9ddee6c9b4c7 0107e01b0935754291691ecde2fcc8dc {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.WXS.A C3L-02408 UCEC WXS tissue_normal CPT0111740006 CPT0111740006.WholeExome.RP-1303.bam 19235218483 BAM submitted_aligned CPTAC3 a643fe16-2e89-40ce-b3bb-ce972789d850 2c5b1481d485d1a8c283aa00e42bef22 {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.WXS.A.hg38 C3L-02408 UCEC WXS tissue_normal CPT0111740006 7d3d60f8-567d-4d86-a1de-d81ef50070fe_wxs_gdc_realn.bam 26015735552 BAM harmonized CPTAC3 86477a87-a191-4799-99b8-ebca39e22f29 8924a46409734917f2b4146e5d56174d {"aliquot_tag": "ALQ_648773e9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02408.WXS.N C3L-02408 UCEC WXS blood_normal CPT0112800002 CPT0112800002.WholeExome.RP-1303.bam 20569111983 BAM submitted_aligned CPTAC3 7982dae4-6c78-4e8a-99de-8d50cd615132 e1933c21ac9326a25e4f021f2e2d1297 {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02408.WXS.N.hg38 C3L-02408 UCEC WXS blood_normal CPT0112800002 0cd0a614-c905-4945-ae49-8c107c22f762_wxs_gdc_realn.bam 28442102980 BAM harmonized CPTAC3 ae484f40-76e3-48d3-8c9c-ff676e193b71 42fa6a796937f3276bacbcc1423fee3b {"aliquot_tag": "ALQ_56d4b978", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02408.WXS.T C3L-02408 UCEC WXS tumor CPT0111720009 CPT0111720009.WholeExome.RP-1303.bam 26277032867 BAM submitted_aligned CPTAC3 89970299-c3a3-4726-a975-a6784ffb71c4 87840b8c149bcecbb0bc934fff3ff5f2 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02408.WXS.T.hg38 C3L-02408 UCEC WXS tumor CPT0111720009 655e2375-fe5a-4021-a349-8a352f35b623_wxs_gdc_realn.bam 36158977342 BAM harmonized CPTAC3 f2fe9eb9-8d33-4bbd-b7ce-0ffc2f3ad648 58e89055a175495a942e7b27c1bd3c81 {"aliquot_tag": "ALQ_7b789bd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.MethArray.Green.T C3L-02409 UCEC Methylation_Array tumor CPT0111810009 203219650165_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bb2f7257-ebe1-4e4e-8c3d-28011b52af50 946b5b0c830bd6a28f81693fd0045964 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.MethArray.Red.T C3L-02409 UCEC Methylation_Array tumor CPT0111810009 203219650165_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 ccfd0e86-e27f-4480-88de-24d4da202efc 01322420b513b960fd8738c33e7d875a {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.miRNA-Seq.A.hg38 C3L-02409 UCEC miRNA-Seq tissue_normal CPT0111820009 dd92407f-a8aa-4de3-b758-19350a43aad1_mirnaseq_gdc_realn.bam 299281832 BAM harmonized CPTAC3 84dec196-be4e-4c45-b168-785e6da4a50a ab18648ea1b01ab8451bc6b6bba5e5ec {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.miRNA-Seq.S12_L002_R1.T C3L-02409 UCEC miRNA-Seq tumor CPT0111810006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTTGTA_S12_L002_R1_001.unaln.bam 203584817 BAM S12_L002_R1 submitted_unaligned CPTAC3 7644ad3a-96a6-4608-8165-5da3a9f79ef0 74e4eb6c8710caebe943de295bc1fca1 {"aliquot_tag": "ALQ_5d314e4c", "sample": "S12", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.miRNA-Seq.S9_L004_R1.A C3L-02409 UCEC miRNA-Seq tissue_normal CPT0111820009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L004_R1_001.unaln.bam 264939839 BAM S9_L004_R1 submitted_unaligned CPTAC3 27fd4093-c047-44b7-83ab-b1bf8f6b6b5c cb3ef79e4465e2c31a3080c6314e3171 {"aliquot_tag": "ALQ_8a2e290d", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.miRNA-Seq.T.hg38 C3L-02409 UCEC miRNA-Seq tumor CPT0111810006 d8d0c5af-a161-452b-ab47-3cd11cbe522b_mirnaseq_gdc_realn.bam 217918353 BAM harmonized CPTAC3 e01168e9-b88a-48b8-96a0-8cfd484b19e4 d5990463aebfdb9e9e261040baa01e4c {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.chimeric.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.chimeric.gdc_realn.bam 36090068 BAM chimeric harmonized CPTAC3 05fbbf01-662c-4bac-973d-70b3947a2ab7 7f9c43b2f9819f57fbca3386e78122a0 {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.RNA-Seq.chimeric.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.chimeric.gdc_realn.bam 29753999 BAM chimeric harmonized CPTAC3 625dfd06-8efa-49e5-8ee4-9def5f37cfe2 ef55f50cad2d14f01a88e36c3f114c06 {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.chimeric.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.chimeric.gdc_realn.bam 242247672 BAM chimeric harmonized CPTAC3 f98e322a-6378-4686-a661-5dba1a475f9a 68b1dd727f291113f02d9bb6dbad3f90 {"aliquot_tag": "ALQ_17d4e916", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.genomic.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.genomic.gdc_realn.bam 8834215564 BAM genomic harmonized CPTAC3 619d06a4-42a8-45d8-912b-093e7a30b5a9 178d2c91172c70c5878402bfbd04ef90 {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.RNA-Seq.genomic.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.genomic.gdc_realn.bam 8720182377 BAM genomic harmonized CPTAC3 77096f1d-5c87-4667-bfd6-55ff1966c8f4 d70b0d40e17edecd050bf579dff4b2b8 {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.genomic.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.genomic.gdc_realn.bam 10919686737 BAM genomic harmonized CPTAC3 c0af9993-8eb8-49b4-a234-b5b31b5942c9 5bb81e341110ad84fde3ca9f4e7c095d {"aliquot_tag": "ALQ_17d4e916", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.S28_R1.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R1_001.fastq.gz 6340904547 FASTQ S28_R1 submitted_unaligned CPTAC3 d1ea33e3-bac8-4f9f-88a6-f8e52b025eac 15bfdb7e78a790516621de8d431701ab {"aliquot_tag": "ALQ_17d4e916", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.S28_R2.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R2_001.fastq.gz 6447997136 FASTQ S28_R2 submitted_unaligned CPTAC3 cdc1227c-1b1d-4fc4-96dd-4b8493d74aa5 b37fd4f8c81de347fa4e2dd0e7d38817 {"aliquot_tag": "ALQ_17d4e916", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.S7_L008_R1.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3460482013 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 a6927022-909e-40cc-b062-2b7392ddf701 e7ebc590132dec146a60ab69bbe25b8d {"aliquot_tag": "ALQ_8a2e290d", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.RNA-Seq.S7_L008_R1.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R1_001.fastq.gz 3865691702 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 14bb434c-51e3-453e-aad4-44249dd90ed5 6dbc631db9cddb8f3ef7b1bae55561f3 {"aliquot_tag": "ALQ_5d314e4c", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.S7_L008_R2.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3620868710 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 43b350af-96f0-492c-9983-23ccd7366854 5d81550115c45a554bed47dd67620b70 {"aliquot_tag": "ALQ_8a2e290d", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.RNA-Seq.S7_L008_R2.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R2_001.fastq.gz 4323666753 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 c024635f-5f2c-4144-9f96-b84ef4df26d1 b7f117f411f1da61ce6365e7af099126 {"aliquot_tag": "ALQ_5d314e4c", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.transcriptome.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.transcriptome.gdc_realn.bam 8531590868 BAM transcriptome harmonized CPTAC3 74aa7b99-a47d-45b6-add5-d7ee5aa6a673 6fdefb86ed91186f3b46abbeef1c385c {"aliquot_tag": "ALQ_8a2e290d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.RNA-Seq.transcriptome.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.transcriptome.gdc_realn.bam 11802762544 BAM transcriptome harmonized CPTAC3 99116155-3616-4354-b28f-d91018d426ec 6fc7ef043e5b87b568be0f587b8540c3 {"aliquot_tag": "ALQ_5d314e4c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.RNA-Seq.transcriptome.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.transcriptome.gdc_realn.bam 5960996971 BAM transcriptome harmonized CPTAC3 043aefd7-2a08-41a2-80e1-97058e5354ce 8786eb200ef3071b2c46e5f3ef2e38b9 {"aliquot_tag": "ALQ_17d4e916", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.WGS.N C3L-02409 UCEC WGS blood_normal CPT0112820002 CPT0112820002.WholeGenome.RP-1303.bam 64903962064 BAM submitted_aligned CPTAC3 1f3bf291-08cd-4532-b76a-d0ca9bdc64e8 04bad01d7ababb29297c745e26a44990 {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02409.WGS.N.hg38 C3L-02409 UCEC WGS blood_normal CPT0112820002 81896c68-aa31-46a4-97ac-71439743c2b8_wgs_gdc_realn.bam 93217125448 BAM harmonized CPTAC3 a8c88020-9768-406c-9fcb-a6e650f5a0dd 1232d3d9d6f2e2fa61be258319fba9da {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02409.WGS.T C3L-02409 UCEC WGS tumor CPT0111810009 CPT0111810009.WholeGenome.RP-1303.bam 67103423453 BAM submitted_aligned CPTAC3 9edf8734-5466-401d-abe2-2f40ee23ba0a 2895a0d5cafeea41c49e11fc2fadd5d6 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.WGS.T.hg38 C3L-02409 UCEC WGS tumor CPT0111810009 04c74c12-fbda-4ba9-9f78-5189321f0aec_wgs_gdc_realn.bam 97998023969 BAM harmonized CPTAC3 1638e1c4-0a38-4590-a34c-4ffeeda9e934 687e5ac370961946225d11fd78d0184b {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.WXS.A C3L-02409 UCEC WXS tissue_normal CPT0111820006 CPT0111820006.WholeExome.RP-1303.bam 18464429480 BAM submitted_aligned CPTAC3 f80e9beb-d1af-4bdb-a545-4254eee08ea4 396428c1e24e5f09b2752ed1418f3109 {"aliquot_tag": "ALQ_1a91349c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.WXS.A.hg38 C3L-02409 UCEC WXS tissue_normal CPT0111820006 dad926bf-7027-41c8-9822-5e8bf01ff928_wxs_gdc_realn.bam 25416697141 BAM harmonized CPTAC3 0056121d-5830-43a2-8be5-bd6dd0d8a7a3 ec47074b81eb7073b3cb6fb09b72dd21 {"aliquot_tag": "ALQ_1a91349c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02409.WXS.N C3L-02409 UCEC WXS blood_normal CPT0112820002 CPT0112820002.WholeExome.RP-1303.bam 24611748363 BAM submitted_aligned CPTAC3 221ee817-1ac5-4308-9a13-4dcf6800773a c577852ec3bf59558c632e5907c39d09 {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02409.WXS.N.hg38 C3L-02409 UCEC WXS blood_normal CPT0112820002 81896c68-aa31-46a4-97ac-71439743c2b8_wxs_gdc_realn.bam 34410247499 BAM harmonized CPTAC3 e941a2c3-92d9-4d5e-b09e-1b9fd24dbb76 856d8576f85c6624eac3e293cfd925e5 {"aliquot_tag": "ALQ_2c14ea18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02409.WXS.T C3L-02409 UCEC WXS tumor CPT0111810009 CPT0111810009.WholeExome.RP-1303.bam 20908122178 BAM submitted_aligned CPTAC3 4e092979-1313-4795-99b9-a82b6dfa3dac 0e3c92ec3b2b0f5e0614dda23e12e0a4 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02409.WXS.T.hg38 C3L-02409 UCEC WXS tumor CPT0111810009 04c74c12-fbda-4ba9-9f78-5189321f0aec_wxs_gdc_realn.bam 29051184108 BAM harmonized CPTAC3 f0fa081b-841f-455f-bb85-2c538405ba5a 7f6f81be8b26eb3571d54faa97ce1337 {"aliquot_tag": "ALQ_cd8e53dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.MethArray.Green.T C3L-02411 UCEC Methylation_Array tumor CPT0111880009 203220070217_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 10cada16-1bd2-47af-b60f-5cfc0a76a92d 6d947b47036cfa7894319831e15e16ec {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.MethArray.Red.T C3L-02411 UCEC Methylation_Array tumor CPT0111880009 203220070217_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5d81d677-f22a-454b-9685-4a7f92a4a649 394056e99b8fee529da1a1320395f4cf {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.miRNA-Seq.S13_L002_R1.T C3L-02411 UCEC miRNA-Seq tumor CPT0111880006 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTCAA_S13_L002_R1_001.unaln.bam 211023200 BAM S13_L002_R1 submitted_unaligned CPTAC3 ebceb14e-0cc3-4493-90e2-41d4b1efad41 d921cfb5ea36b361f9d55f8f305aa227 {"aliquot_tag": "ALQ_50212c3d", "sample": "S13", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.miRNA-Seq.T.hg38 C3L-02411 UCEC miRNA-Seq tumor CPT0111880006 721e79c8-cb84-4b8b-8cf7-2607b872d9f0_mirnaseq_gdc_realn.bam 234113888 BAM harmonized CPTAC3 1c90d873-1357-4d29-946d-98458cd7ffb3 c62c8bdf2c20cb347fbbcdbb60f692cb {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.chimeric.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.chimeric.gdc_realn.bam 27415178 BAM chimeric harmonized CPTAC3 8c841a9e-38bb-4cbc-9ef7-18bc265ddf15 fc143f385a004e01c67c6c16e1cce3d2 {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.chimeric.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.chimeric.gdc_realn.bam 230554674 BAM chimeric harmonized CPTAC3 5311c4f0-4053-4635-9cda-cc20db7fe101 0ccb010c5c399e0acd9969b7538d8412 {"aliquot_tag": "ALQ_df346666", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.genomic.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.genomic.gdc_realn.bam 7402513598 BAM genomic harmonized CPTAC3 a96c740b-bcca-4df0-9835-25d9c7fe57cc 454598b53a072e20cb829593f2719335 {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.genomic.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.genomic.gdc_realn.bam 12859994243 BAM genomic harmonized CPTAC3 94e6e333-0065-4571-bf25-023adb7ca5a5 f9a9e82c862fd276016daa54885cb54d {"aliquot_tag": "ALQ_df346666", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.S3_L007_R1.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R1_001.fastq.gz 3308226370 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 f774f09c-dc3a-4bc7-a507-e60277660a00 04438c14b305929f18ea8093144c6b00 {"aliquot_tag": "ALQ_50212c3d", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.S3_L007_R2.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R2_001.fastq.gz 3587709068 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 4a5b8233-dfb8-4b8d-822d-e58724ec646b 182e491cac01607b175fb7ce05ff4312 {"aliquot_tag": "ALQ_50212c3d", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.S57_R1.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R1_001.fastq.gz 7929005404 FASTQ S57_R1 submitted_unaligned CPTAC3 7a2313e3-793e-4f7a-a581-b9c04114be26 cf432f857c3a765ee07d1843ede0b28e {"aliquot_tag": "ALQ_df346666", "sample": "S57", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.S57_R2.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R2_001.fastq.gz 8280240762 FASTQ S57_R2 submitted_unaligned CPTAC3 6be38c27-c7f8-40b5-82b3-44acc244e085 ec6649e52ed45247d463873624cddec9 {"aliquot_tag": "ALQ_df346666", "sample": "S57", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.transcriptome.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.transcriptome.gdc_realn.bam 9883721495 BAM transcriptome harmonized CPTAC3 4ac79bcb-8014-432c-840c-1dddd2ab14d8 f1c0baa65bf59e69587964e41823c258 {"aliquot_tag": "ALQ_50212c3d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.RNA-Seq.transcriptome.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.transcriptome.gdc_realn.bam 9381247173 BAM transcriptome harmonized CPTAC3 9bfd106b-804a-4f2c-9240-e63e332dd4c1 73bdb37a9f343804936851ec71b9683b {"aliquot_tag": "ALQ_df346666", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.WGS.N C3L-02411 UCEC WGS blood_normal CPT0112840002 CPT0112840002.WholeGenome.RP-1303.bam 56837803305 BAM submitted_aligned CPTAC3 2f3171e9-9ca1-4db2-9fbe-2b375c4ad031 cded913ad5928621aafaa7f9483ca28d {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02411.WGS.N.hg38 C3L-02411 UCEC WGS blood_normal CPT0112840002 aff3933b-05f9-4d3c-bb1f-bfac8b2df77b_wgs_gdc_realn.bam 81671795192 BAM harmonized CPTAC3 2d2cffc0-a786-409c-a71c-6bad1a8c1c59 28203a98e5c8bf7c3b1fd833e8ff61bc {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02411.WGS.T C3L-02411 UCEC WGS tumor CPT0111880009 CPT0111880009.WholeGenome.RP-1303.bam 52194051926 BAM submitted_aligned CPTAC3 aebc393b-8b69-471d-ada4-64c8c9242810 c3750372f34c7d5a4e6dcefadbf57145 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.WGS.T.hg38 C3L-02411 UCEC WGS tumor CPT0111880009 d119882d-6840-4288-9601-49fe5cad97b2_wgs_gdc_realn.bam 75819720550 BAM harmonized CPTAC3 fa7217f1-977a-4be9-a7eb-e74929ef8fa8 607e710a704e75ae80c68b416e3dece6 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.WXS.N C3L-02411 UCEC WXS blood_normal CPT0112840002 CPT0112840002.WholeExome.RP-1303.bam 26590057955 BAM submitted_aligned CPTAC3 6e0b00d7-3515-4a4c-905b-3422b8543ad6 4b072ecb63098d4815565340a1a88911 {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02411.WXS.N.hg38 C3L-02411 UCEC WXS blood_normal CPT0112840002 aff3933b-05f9-4d3c-bb1f-bfac8b2df77b_wxs_gdc_realn.bam 36563447135 BAM harmonized CPTAC3 6622cb56-93ff-4d11-9da4-9d529f462762 9af2ae8931b3bd199dc4dff3f16e7518 {"aliquot_tag": "ALQ_a3541fb8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02411.WXS.T C3L-02411 UCEC WXS tumor CPT0111880009 CPT0111880009.WholeExome.RP-1303.bam 28317529386 BAM submitted_aligned CPTAC3 36646bff-7b2d-4431-a0b2-e1911bc50a06 ee7feba3bc48c88c0d3677bb52fe4f24 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02411.WXS.T.hg38 C3L-02411 UCEC WXS tumor CPT0111880009 d119882d-6840-4288-9601-49fe5cad97b2_wxs_gdc_realn.bam 38303810974 BAM harmonized CPTAC3 407fe980-82a5-47e8-ab24-1fdd2c98e0f0 a7a2d246ab0d22653bbc1f7e0e4647d6 {"aliquot_tag": "ALQ_c09e31ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.MethArray.Green.T C3L-02412 UCEC Methylation_Array tumor CPT0111950009 203219760081_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ecab69fb-5e87-49b4-839f-50b1b574b175 e24b1ac1f48161f56f180a931da73725 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.MethArray.Red.T C3L-02412 UCEC Methylation_Array tumor CPT0111950009 203219760081_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 b909aef4-7ec9-4b1f-8299-eb3f93f635cd 9ddca45818ab23d5e499538207618b46 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.miRNA-Seq.A.hg38 C3L-02412 UCEC miRNA-Seq tissue_normal CPT0111980007 d6ab8ebf-e794-45c4-8667-7de5951f2e26_mirnaseq_gdc_realn.bam 253964770 BAM harmonized CPTAC3 f8809677-eac1-4734-b9e4-976591c19816 9ed5284566d0f9a348d100241ada0087 {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.miRNA-Seq.S12_L004_R1.A C3L-02412 UCEC miRNA-Seq tissue_normal CPT0111980007 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L004_R1_001.unaln.bam 220223630 BAM S12_L004_R1 submitted_unaligned CPTAC3 5af3e6e7-f857-4828-a219-9f38ce7d6ece 11d9b9a63de9cd311b39cd71807e2d2a {"aliquot_tag": "ALQ_ec7acf0e", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.miRNA-Seq.S14_L002_R1.T C3L-02412 UCEC miRNA-Seq tumor CPT0111950006 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTTCC_S14_L002_R1_001.unaln.bam 182653593 BAM S14_L002_R1 submitted_unaligned CPTAC3 3dfd218d-72fe-4b7f-a63c-c4ece52ce672 fc88930fa8de091d5f009603b113c6db {"aliquot_tag": "ALQ_63ed3b29", "sample": "S14", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.miRNA-Seq.T.hg38 C3L-02412 UCEC miRNA-Seq tumor CPT0111950006 213aef35-67f9-4131-b30e-9c1b248d7947_mirnaseq_gdc_realn.bam 197276799 BAM harmonized CPTAC3 eb83bde6-0048-4f92-b906-3516dc5c331b d45747ccbe887f86dcc795a6004d751b {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.chimeric.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.chimeric.gdc_realn.bam 40394096 BAM chimeric harmonized CPTAC3 b431ec42-30a3-4a30-8912-7e908db0480a 963e28326d38f30d5b85d7586e4fad4c {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.RNA-Seq.chimeric.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.chimeric.gdc_realn.bam 29381630 BAM chimeric harmonized CPTAC3 415c87f5-82d0-4b9f-aece-cf450ab9df1f 206d319f048edb44d7aa35d41870555c {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.chimeric.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.chimeric.gdc_realn.bam 165662012 BAM chimeric harmonized CPTAC3 fca1478c-7f0a-4b2e-a0fc-7ef4db452203 bac97f7ddd495366de149d355b7b4e87 {"aliquot_tag": "ALQ_98941cb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.genomic.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.genomic.gdc_realn.bam 9650787722 BAM genomic harmonized CPTAC3 88970bd0-5bce-4bdd-80c5-dbafec510bfe 432e584388cdc65c2ae5a1f317ced544 {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.RNA-Seq.genomic.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.genomic.gdc_realn.bam 8847890041 BAM genomic harmonized CPTAC3 1a8e4422-6f59-418e-ba19-18bf489bb574 75b8dc8e7a68fe6698b24ff7b26082c9 {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.genomic.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.genomic.gdc_realn.bam 7516544451 BAM genomic harmonized CPTAC3 690ccae0-4335-465b-ba62-1a0b005bea31 96f645d9c5a36bc07a0af15c0130475d {"aliquot_tag": "ALQ_98941cb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.S1_L001_R1.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3808109443 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 e05c93fc-1e4f-4d51-82a7-58c01816a142 e13d76c2755fe46e1a3732d5027606af {"aliquot_tag": "ALQ_ec7acf0e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.RNA-Seq.S1_L001_R2.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4250017479 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 5f1eae01-e250-4622-8fff-f3d8212dcd83 2fdea067e408b8f17364dbd520427f14 {"aliquot_tag": "ALQ_ec7acf0e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.RNA-Seq.S2_L007_R1.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R1_001.fastq.gz 4005521705 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 9e02b72f-5d15-4ebd-ad2d-d90b9cfca76a 673eafb024120c44e529b8a93819edfc {"aliquot_tag": "ALQ_63ed3b29", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.S2_L007_R2.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R2_001.fastq.gz 4333965191 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 e52c832f-62e8-4c01-b6f9-6146fff0feb9 221bed5bb5484454d6352c120038cb70 {"aliquot_tag": "ALQ_63ed3b29", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.S65_R1.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R1_001.fastq.gz 4283516048 FASTQ S65_R1 submitted_unaligned CPTAC3 bafdfc8b-5a57-4e55-9cbc-19dc6acc211e e5e5c24efba3fd9e2f8ab67cc35e154a {"aliquot_tag": "ALQ_98941cb6", "sample": "S65", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.S65_R2.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R2_001.fastq.gz 4395270888 FASTQ S65_R2 submitted_unaligned CPTAC3 42caf0f7-a0ee-4535-81eb-f4dd7191aa32 2ac40f59a562764c69c889d84c4da635 {"aliquot_tag": "ALQ_98941cb6", "sample": "S65", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.transcriptome.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.transcriptome.gdc_realn.bam 10846678957 BAM transcriptome harmonized CPTAC3 a8d9f155-1162-4d30-9c7b-4ef638ecf491 d2a1dfdee628ba36bf3260f7feda5924 {"aliquot_tag": "ALQ_ec7acf0e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.RNA-Seq.transcriptome.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.transcriptome.gdc_realn.bam 11929627883 BAM transcriptome harmonized CPTAC3 44ac63d5-f956-4a4a-aa35-86388f484e72 addce7d06f6767fda02b052f3ab26acb {"aliquot_tag": "ALQ_63ed3b29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.RNA-Seq.transcriptome.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.transcriptome.gdc_realn.bam 3703108006 BAM transcriptome harmonized CPTAC3 c84becf0-6c77-4c2e-aa70-e75161b97760 5d868be0b794b20405b933bbd8676dfc {"aliquot_tag": "ALQ_98941cb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.WGS.A C3L-02412 UCEC WGS tissue_normal CPT0111980005 CPT0111980005.WholeGenome.RP-1303.bam 67748347674 BAM submitted_aligned CPTAC3 bf9f82e8-b854-452c-9058-a0fb938323fb aff47e2bfa9f5486faa23edcf7c5eebe {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.WGS.A.hg38 C3L-02412 UCEC WGS tissue_normal CPT0111980005 632fbad2-42a4-4e6b-a489-dcf2cebc65ec_wgs_gdc_realn.bam 101356886901 BAM harmonized CPTAC3 27377076-3b25-4052-9dcf-ae13a93bee25 0302bc12eaa0ff9695d18cd722c84da5 {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.WGS.N C3L-02412 UCEC WGS blood_normal CPT0112860002 CPT0112860002.WholeGenome.RP-1303.bam 58061618568 BAM submitted_aligned CPTAC3 4052fdc6-93a6-43fa-ac5b-21b6c5a0b1a4 f506509da25dbd73deaa0511cc9503d8 {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02412.WGS.N.hg38 C3L-02412 UCEC WGS blood_normal CPT0112860002 e1768f22-93ea-4116-9b32-85fc11664036_wgs_gdc_realn.bam 86055460185 BAM harmonized CPTAC3 b62ded29-1460-45b9-8c2a-d55d36f48a75 1d5632e99549f5e514f46f13d82f08b0 {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02412.WGS.T C3L-02412 UCEC WGS tumor CPT0111950009 CPT0111950009.WholeGenome.RP-1303.bam 60326824703 BAM submitted_aligned CPTAC3 d3c6701e-8535-45b6-95d8-c125032440cf dd638e9e1dc6533ee9b8bc88dd8c2a69 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.WGS.T.hg38 C3L-02412 UCEC WGS tumor CPT0111950009 c6136e6f-066c-4436-ac0f-3890c4f7c0d0_wgs_gdc_realn.bam 88585676347 BAM harmonized CPTAC3 0b0b1249-770b-444d-9068-5d8727b14411 a5a93886bc60da9a1b09203df0619072 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.WXS.A C3L-02412 UCEC WXS tissue_normal CPT0111980005 CPT0111980005.WholeExome.RP-1303.bam 25585128702 BAM submitted_aligned CPTAC3 8c8908de-bd1e-4402-b08e-0fc11e1599f2 e826525fc103d33847497657ddd1866d {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.WXS.A.hg38 C3L-02412 UCEC WXS tissue_normal CPT0111980005 632fbad2-42a4-4e6b-a489-dcf2cebc65ec_wxs_gdc_realn.bam 35422339614 BAM harmonized CPTAC3 4178b5d7-daaa-43ce-84b0-097e6ff71723 2d3523d1c96ed657df0fba98f164b009 {"aliquot_tag": "ALQ_274ae22", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02412.WXS.N C3L-02412 UCEC WXS blood_normal CPT0112860002 CPT0112860002.WholeExome.RP-1303.bam 26246588179 BAM submitted_aligned CPTAC3 267af51e-0e6a-4092-930d-2d0ac36b3ffa 0c467ee85f53b651bc4e20457d087586 {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02412.WXS.N.hg38 C3L-02412 UCEC WXS blood_normal CPT0112860002 e1768f22-93ea-4116-9b32-85fc11664036_wxs_gdc_realn.bam 36624146300 BAM harmonized CPTAC3 be05cdfe-ae4b-46dd-82fb-8b53d66ed75c 78912c7e084d9a41f71bac816f66b2fa {"aliquot_tag": "ALQ_d9944cd8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02412.WXS.T C3L-02412 UCEC WXS tumor CPT0111950009 CPT0111950009.WholeExome.RP-1303.bam 22750931371 BAM submitted_aligned CPTAC3 9305fad6-adfe-4992-b1d3-dba21a4d2353 680867a4a820f86811c504e57af9552b {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02412.WXS.T.hg38 C3L-02412 UCEC WXS tumor CPT0111950009 c6136e6f-066c-4436-ac0f-3890c4f7c0d0_wxs_gdc_realn.bam 31392793713 BAM harmonized CPTAC3 ee68b2a0-2c54-44f7-beec-06649f3d3ff6 bb907a559f54d69f1f8b05ce5d36b333 {"aliquot_tag": "ALQ_f35226b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02448.miRNA-Seq.S40_L002_R1.T C3L-02448 UCEC miRNA-Seq tumor CPT0186630025 190508_UNC31-K00269_0215_BH7FYKBBXY_CTCAGA_S40_L002_R1_001.unaln.bam 277878863 BAM S40_L002_R1 submitted_unaligned CPTAC3 cb9a266f-f4bf-45b8-8d85-194b0ae73907 02564ccdf3d2bbfe0ab638d364d8c28f {"aliquot_tag": "ALQ_6c2c6ac1", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02448.miRNA-Seq.T.hg38 C3L-02448 UCEC miRNA-Seq tumor CPT0186630025 070c3400-70de-440a-9804-56ae2d52a92e_mirnaseq_gdc_realn.bam 304278318 BAM harmonized CPTAC3 fca3960b-e3e2-4ce7-98a5-5672cbbe069c 1f94dd9b46599fd8c6e4e7d0fd7a907e {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02448.RNA-Seq.chimeric.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.chimeric.gdc_realn.bam 34327681 BAM chimeric harmonized CPTAC3 907b7581-bd30-4b63-a632-47f7a2496100 1dc530d470fd57609be1d79e654a11c2 {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02448.RNA-Seq.genomic.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.genomic.gdc_realn.bam 7920322732 BAM genomic harmonized CPTAC3 bf3baf13-6e56-43d9-8e46-bc0ca461b9c5 7a0a8a0bc5f26b7a4fcbec0ba063f61e {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02448.RNA-Seq.S22_L006_R1.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R1_001.fastq.gz 3769800668 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 0a6b5f61-d040-484a-99ad-4b8886703a69 16f0336ac17ba08b96a107def9c64ae4 {"aliquot_tag": "ALQ_6c2c6ac1", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02448.RNA-Seq.S22_L006_R2.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R2_001.fastq.gz 4248680653 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 0a542eab-9406-4cee-944f-2ccd797f1b18 10183df69fdceac0984ecad2c4e1e91a {"aliquot_tag": "ALQ_6c2c6ac1", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02448.RNA-Seq.transcriptome.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.transcriptome.gdc_realn.bam 10549502138 BAM transcriptome harmonized CPTAC3 ef6176fc-4aa6-4bb8-a77d-fe8b4af870d8 a673b3dfc004cc40f212eeb796a172b0 {"aliquot_tag": "ALQ_6c2c6ac1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.DUP_3349db51.WGS.N C3L-02449 UCEC WGS blood_normal CPT0186780002_1 CPT0186780002_1.WholeGenome.RP-1303.bam 87425359700 BAM submitted_aligned CPTAC3 a35e4efe-e9c0-46d6-909d-a16cf6c12121 14d152a1d55c71764ed877666290f791 {"aliquot_tag": "DUP_3349db51", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02449.DUP_3349db51.WGS.N.hg38 C3L-02449 UCEC WGS blood_normal CPT0186780002_1 608f78f8-a23b-4df9-b3f9-c0824695238d_wgs_gdc_realn.bam 126632110934 BAM harmonized CPTAC3 a8000967-e889-4f9e-b5a6-33ea8297cbc7 2e626cd33498e763e74b765800e3a5bb {"aliquot_tag": "DUP_3349db51", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02449.MethArray.Green.T C3L-02449 UCEC Methylation_Array tumor CPT0186720011 203561620091_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 353c63ab-8785-4cf8-9089-6e5680e188f7 3a229d15e39603410ac6a8b01c38b9eb {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.MethArray.Red.T C3L-02449 UCEC Methylation_Array tumor CPT0186720011 203561620091_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 fa0e0be1-0b58-4d22-8eb2-80f15309dd89 1816c92b01c134c20123032c8c014d4f {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.miRNA-Seq.S11_L003_R1.T C3L-02449 UCEC miRNA-Seq tumor CPT0186720014 190508_UNC31-K00269_0215_BH7FYKBBXY_GGCTAC_S11_L003_R1_001.unaln.bam 216017080 BAM S11_L003_R1 submitted_unaligned CPTAC3 fc630151-931e-46ce-b885-0996856f4a08 15cc6814b2cd72a2d911dfeac309b57d {"aliquot_tag": "ALQ_c63af381", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.miRNA-Seq.T.hg38 C3L-02449 UCEC miRNA-Seq tumor CPT0186720014 52b3ec42-b93e-4533-b8c2-f07b1a3a6a4f_mirnaseq_gdc_realn.bam 252448578 BAM harmonized CPTAC3 ae766422-a45c-42a3-9e4b-6e1c751c31ec 172f6b7cb6cdf1a4c02fe01c6c58c4d1 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.chimeric.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.chimeric.gdc_realn.bam 37796385 BAM chimeric harmonized CPTAC3 106a3b4c-79e7-4dea-a58e-38d76c104212 067f0c1cb4928d0be8ee5ba05192ae32 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.chimeric.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.chimeric.gdc_realn.bam 187234054 BAM chimeric harmonized CPTAC3 9681684f-95cd-4f76-ba61-28cdc3f6f681 bd3f18321e41d57684b1c3faeecf0660 {"aliquot_tag": "ALQ_200bc3ef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.genomic.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.genomic.gdc_realn.bam 8689945256 BAM genomic harmonized CPTAC3 495fea92-b1d2-4974-84c4-b4f302e65b57 e11c13e2acb9ec7da2f6f456a364e073 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.genomic.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.genomic.gdc_realn.bam 10091292588 BAM genomic harmonized CPTAC3 05fec7e7-79d2-4478-bed3-e1619a4dd261 e582b84710b7ece8e83906f7962581a3 {"aliquot_tag": "ALQ_200bc3ef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.S23_R1.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R1_001.fastq.gz 5953978764 FASTQ S23_R1 submitted_unaligned CPTAC3 a7794d59-4c2a-4e54-9428-bbc810669a80 b18f778ca68c0f58b00febf36489d7b1 {"aliquot_tag": "ALQ_200bc3ef", "sample": "S23", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.S23_R2.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R2_001.fastq.gz 6081868873 FASTQ S23_R2 submitted_unaligned CPTAC3 e359af4b-e8ff-4ac3-8cbc-7a5bc1ba5f9c c6f293febbefb6613db3234d243f883b {"aliquot_tag": "ALQ_200bc3ef", "sample": "S23", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.S31_L008_R1.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R1_001.fastq.gz 4129236265 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 32193bba-1d22-4c17-b17a-01aae32f3280 6957d3dd8b3023f5336a248c89ce1561 {"aliquot_tag": "ALQ_c63af381", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.S31_L008_R2.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R2_001.fastq.gz 4737807954 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 0d3037b1-dfa7-4961-b6f2-59e2e8e73da5 84d82e206ac896a0beecb8d96b6a5e5b {"aliquot_tag": "ALQ_c63af381", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.transcriptome.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.transcriptome.gdc_realn.bam 11380242310 BAM transcriptome harmonized CPTAC3 ce88c6eb-59f5-4895-836d-7953a3b35c55 bfa8bff19c5908eaf4f20bdc04743416 {"aliquot_tag": "ALQ_c63af381", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.RNA-Seq.transcriptome.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.transcriptome.gdc_realn.bam 5897591817 BAM transcriptome harmonized CPTAC3 f1372439-b21a-451d-963b-960b61b5ca73 31289cba3728d6bb70bc8f0065a2cbff {"aliquot_tag": "ALQ_200bc3ef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.WGS.N C3L-02449 UCEC WGS blood_normal CPT0186780002 CPT0186780002.WholeGenome.RP-1303.bam 20744730577 BAM submitted_aligned CPTAC3 0ba1abba-4565-4703-893e-dc03520f0c31 b4d068426bff929995d7a51b74a59318 {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02449.WGS.N.hg38 C3L-02449 UCEC WGS blood_normal CPT0186780002 f3a3cb29-ab76-4b95-9d3e-dd4b8b5b1237_wgs_gdc_realn.bam 28658182043 BAM harmonized CPTAC3 ecae7a24-aa78-423e-a70a-362e25e8d306 b7f2edfe5d20344fa38f20c7b2032d6a {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02449.WGS.T C3L-02449 UCEC WGS tumor CPT0186720011 CPT0186720011.WholeGenome.RP-1303.bam 72060076327 BAM submitted_aligned CPTAC3 1ed5ff40-ba7a-4ef6-827d-425d77f140b8 bf48ba9b208173c0e45d588da056fbcc {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.WGS.T.hg38 C3L-02449 UCEC WGS tumor CPT0186720011 59c241ad-6521-4160-9f53-e2008f8cb92d_wgs_gdc_realn.bam 104093743900 BAM harmonized CPTAC3 001c86d0-09a3-4ab5-8993-a55791828185 bd0532f73c8523a8f860854a336a4cd1 {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.WXS.N C3L-02449 UCEC WXS blood_normal CPT0186780002 CPT0186780002.WholeExome.RP-1303.bam 20744730615 BAM submitted_aligned CPTAC3 30b0cc8e-edf8-4a90-bd04-65b538847b22 c6754c57330c9d4f113b758f0cebeefc {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02449.WXS.N.hg38 C3L-02449 UCEC WXS blood_normal CPT0186780002 f3a3cb29-ab76-4b95-9d3e-dd4b8b5b1237_wxs_gdc_realn.bam 28684848068 BAM harmonized CPTAC3 87861ccd-0e1f-4499-9ddb-e290c7517df6 1fcc98ddf31eed33e9a03233bde74501 {"aliquot_tag": "ALQ_7cf27f54", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02449.WXS.T C3L-02449 UCEC WXS tumor CPT0186720011 CPT0186720011.WholeExome.RP-1303.bam 19817232862 BAM submitted_aligned CPTAC3 9eeaf2f2-4cb1-4a3a-a6d8-f6ec1f508c5a 7a032782c4de253581173c3252cc79fa {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02449.WXS.T.hg38 C3L-02449 UCEC WXS tumor CPT0186720011 59c241ad-6521-4160-9f53-e2008f8cb92d_wxs_gdc_realn.bam 26774917271 BAM harmonized CPTAC3 07f80918-aa00-45a6-a79c-292dcd624e77 af8e8a7e3188ad9e96f2be4ed81b9755 {"aliquot_tag": "ALQ_b650070e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02463.MethArray.Green.A C3L-02463 PDA Methylation_Array tissue_normal CPT0126200006 203561620095_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a45f0b9d-05df-4da8-8b06-5474d34b6a01 ac83a9c4c1c0ad6a5ccd9c31eb02609a {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.MethArray.Green.T C3L-02463 PDA Methylation_Array tumor CPT0126160010 203028200014_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4fe0ae35-d53b-46ed-a4d5-1ac8e14b812a 90c6129729d766ea9c65cb99cfd33ffb {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.MethArray.Red.A C3L-02463 PDA Methylation_Array tissue_normal CPT0126200006 203561620095_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 9834cbd4-628c-44af-811b-ec309b353899 2a71f339240c9271057b6bbb871d1c89 {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.MethArray.Red.T C3L-02463 PDA Methylation_Array tumor CPT0126160010 203028200014_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 e61fad76-85fc-4b23-9751-e45fffa97d1f 0868171b18a22134cb94fa3e2a4be37d {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.miRNA-Seq.A.hg38 C3L-02463 PDA miRNA-Seq tissue_normal CPT0126200009 6f2a11df-d210-4ee3-ad1a-41fcfd2b7026_mirnaseq_gdc_realn.bam 232042347 BAM harmonized CPTAC3 ca078290-c4f9-4c87-8a2e-8cf8ff53a4d7 fcb10b1718d13f4ada69b7e33f80cd91 {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.miRNA-Seq.S21_L001_R1.A C3L-02463 PDA miRNA-Seq tissue_normal CPT0126200009 181108_UNC31-K00269_0162_AH255GBBXY_TCATTC_S21_L001_R1_001.unaln.bam 209073106 BAM S21_L001_R1 submitted_unaligned CPTAC3 b6234fad-12bb-4f6e-b589-ea7614ebb344 dc85ee8a5efb6f1de2360642e5663a24 {"aliquot_tag": "ALQ_1a5d6066", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.miRNA-Seq.S41_L004_R1.T C3L-02463 PDA miRNA-Seq tumor CPT0126160007 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L004_R1_001.unaln.bam 216046436 BAM S41_L004_R1 submitted_unaligned CPTAC3 58c8e5b7-d3db-4cd8-bd93-3acf148819c6 17a5a7381c16c0c7ac6a75a09fd90a5b {"aliquot_tag": "ALQ_f431ca6f", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.miRNA-Seq.T.hg38 C3L-02463 PDA miRNA-Seq tumor CPT0126160007 85c7be35-1b7e-404e-bc53-859b13d3fef8_mirnaseq_gdc_realn.bam 240026012 BAM harmonized CPTAC3 78994590-056a-4db8-abd0-f4fab5c66ebb 4ffd0801e3479ce9f6c5266f94263f35 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.RNA-Seq.chimeric.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.chimeric.gdc_realn.bam 65238887 BAM chimeric harmonized CPTAC3 ff4f00eb-24be-4118-8f17-c829f7712003 b1d88900f7d4c784e890943f63acd4e7 {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.RNA-Seq.chimeric.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.chimeric.gdc_realn.bam 189326991 BAM chimeric harmonized CPTAC3 b51b6d2e-c2bc-4ec3-96a7-dfacaf75a500 5e7e5872ad2df37526e4ecdb0e27a278 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.RNA-Seq.genomic.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.genomic.gdc_realn.bam 9127886309 BAM genomic harmonized CPTAC3 6bce3332-f473-4fc6-b22f-658de4f58e03 bdfe7bd49f1e0dfc98cf737658fce75e {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.RNA-Seq.genomic.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.genomic.gdc_realn.bam 9941375173 BAM genomic harmonized CPTAC3 523911a0-56d9-4f07-8e7e-b70311188909 d81192da4d25db7a9982c814f943ed59 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.RNA-Seq.S16_L004_R1.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4193574228 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 30e3fce0-6014-4930-bad1-76b80c5bf529 a0f7e670b3219cdf65a149c6ea3c5bd9 {"aliquot_tag": "ALQ_1a5d6066", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.RNA-Seq.S16_L004_R2.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4669019038 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 e1f56e1d-17f4-447b-b60d-0ba0da66268d a13dd1973cf7a78ddc4ec26cdc054004 {"aliquot_tag": "ALQ_1a5d6066", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.RNA-Seq.S3_L001_R1.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R1_001.fastq.gz 3682714278 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 950545ec-e02e-4c64-8b58-8a1918505cad 53d37cc53b7928eac66192cad23d2b77 {"aliquot_tag": "ALQ_f431ca6f", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.RNA-Seq.S3_L001_R2.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R2_001.fastq.gz 4046869988 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 348dab83-76e4-454e-8880-cd277acefa07 2717257ab862c9ed115850409981d08c {"aliquot_tag": "ALQ_f431ca6f", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.RNA-Seq.transcriptome.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.transcriptome.gdc_realn.bam 11444816490 BAM transcriptome harmonized CPTAC3 97858b61-8e71-4cdd-92f0-fec406b5279a d69062d4c513b2c00222416a391c77c5 {"aliquot_tag": "ALQ_1a5d6066", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.RNA-Seq.transcriptome.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.transcriptome.gdc_realn.bam 9909207707 BAM transcriptome harmonized CPTAC3 85460c26-60c6-43fe-acfb-a9cde51424ee a97d65b6109a2c47b31b0c0cd747f848 {"aliquot_tag": "ALQ_f431ca6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.Targeted.T C3L-02463 PDA Targeted_Sequencing tumor CPT0126160010_1 CPT0126160010_1.CustomSelection.RP-1303.PDO-18786.bam 4180157917 BAM submitted_aligned CPTAC3 523d7b2e-5064-4b65-8ba3-b53d16dfcd90 54665ccaae7e2e80e2725c9e8372eaf6 {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.Targeted.T.hg38 C3L-02463 PDA Targeted_Sequencing tumor CPT0126160010_1 c07b641d-246b-40b4-b031-8ff1fab81044_targetedsequencing_gdc_realn.bam 5907294025 BAM harmonized CPTAC3 ad3d6c6f-c1df-4e53-9bc7-b9f59ba56155 77e9239b9a549b8de216be8de4c4b719 {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.WGS.A C3L-02463 PDA WGS tissue_normal CPT0126200006 CPT0126200006.WholeGenome.RP-1303.bam 68470065527 BAM submitted_aligned CPTAC3 9d8268aa-b906-4710-8c3e-23c5941a7f31 ba03e9ac8d1de94a001d30f6ef7f0e00 {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.WGS.A.hg38 C3L-02463 PDA WGS tissue_normal CPT0126200006 b37873ec-8a53-4a6b-8c34-1338e8313b55_wgs_gdc_realn.bam 99387447578 BAM harmonized CPTAC3 efdb4e60-e0f1-4559-a0d7-ccc948332a1b ba355f0d7fb88954a21032884db4193b {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.WGS.N C3L-02463 PDA WGS blood_normal CPT0124290002 CPT0124290002.WholeGenome.RP-1303.bam 54773447770 BAM submitted_aligned CPTAC3 67baaee0-e1d7-46b0-9718-7ed97f4279bc 176a8003b2404f7aaf3bd3ec2a758a54 {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02463.WGS.N.hg38 C3L-02463 PDA WGS blood_normal CPT0124290002 fc028a4c-0e9f-44f7-9d44-d51bee5a66b7_wgs_gdc_realn.bam 80233672127 BAM harmonized CPTAC3 3e1b5861-c5bc-4af4-b558-9a8e641940f1 f72df6541b968695a59e2697eeaf1772 {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02463.WGS.T C3L-02463 PDA WGS tumor CPT0126160010 CPT0126160010.WholeGenome.RP-1303.bam 65304048058 BAM submitted_aligned CPTAC3 dfd60e74-88c3-4767-b730-3c7e6ab8c586 06594bc9b8fd5d1f83ee40748e0d388f {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.WGS.T.hg38 C3L-02463 PDA WGS tumor CPT0126160010 c34fad46-4da8-4e0a-8b47-44c57040312b_wgs_gdc_realn.bam 95148435219 BAM harmonized CPTAC3 3455e2ae-0417-41f0-b283-f043d7f84d10 f7d4e4dc4f8cd0fe67622dbb220c4d17 {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.WXS.A C3L-02463 PDA WXS tissue_normal CPT0126200006 CPT0126200006.WholeExome.RP-1303.bam 22732683669 BAM submitted_aligned CPTAC3 ce3e1a6c-a119-4675-a5c8-f241579d048c ef7166818c9c5aa28b51a1eef830351b {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.WXS.A.hg38 C3L-02463 PDA WXS tissue_normal CPT0126200006 b37873ec-8a53-4a6b-8c34-1338e8313b55_wxs_gdc_realn.bam 30749070096 BAM harmonized CPTAC3 de451a81-c5cb-4c8b-9ab2-ff2d890d0b1f 536708c22cff7155f4ca6ef96f555e0b {"aliquot_tag": "ALQ_8ae27df7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02463.WXS.N C3L-02463 PDA WXS blood_normal CPT0124290002 CPT0124290002.WholeExome.RP-1303.bam 51879521140 BAM submitted_aligned CPTAC3 a51d312e-6625-442b-b71d-22edad45bcad e35cb187109653cf519359defed9f58f {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02463.WXS.N.hg38 C3L-02463 PDA WXS blood_normal CPT0124290002 fc028a4c-0e9f-44f7-9d44-d51bee5a66b7_wxs_gdc_realn.bam 70496084291 BAM harmonized CPTAC3 0cbfda04-0da2-4ec1-b428-5a71b045c5b6 8ac86d28080149062a8857e26c6b2e19 {"aliquot_tag": "ALQ_1700cab6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02463.WXS.T C3L-02463 PDA WXS tumor CPT0126160010_1 CPT0126160010_1.WholeExome.RP-1303.bam 45184926050 BAM submitted_aligned CPTAC3 b71c5099-3ade-46da-abd6-d683411ec624 73f13c4167366f4ea72de6b1231d3457 {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.WXS.T C3L-02463 PDA WXS tumor CPT0126160010 CPT0126160010.WholeExome.RP-1303.bam 24804748112 BAM submitted_aligned CPTAC3 df24ced8-f16a-4d99-b042-4e24149669e6 e3302281ac2b0607790f84fca3ca395c {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.WXS.T.hg38 C3L-02463 PDA WXS tumor CPT0126160010_1 c07b641d-246b-40b4-b031-8ff1fab81044_wxs_gdc_realn.bam 61058541411 BAM harmonized CPTAC3 b2500e62-21dd-446c-9a7f-ba4100c5b5b4 4e26e1f8256d3c8e09637008248391ff {"aliquot_tag": "ALQ_9038a49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02463.WXS.T.hg38 C3L-02463 PDA WXS tumor CPT0126160010 c34fad46-4da8-4e0a-8b47-44c57040312b_wxs_gdc_realn.bam 33335626547 BAM harmonized CPTAC3 27d55850-058a-4b69-8a5b-dcb5177a7054 f32616adb83fde6609d11cf671f091cb {"aliquot_tag": "ALQ_734e6e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.MethArray.Green.T C3L-02465 GBM Methylation_Array tumor CPT0125570009 203219670117_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bcbb1bcf-488b-4edf-a72b-c44f84bce074 ba16df21752393c4e75faf116d235694 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.MethArray.Red.T C3L-02465 GBM Methylation_Array tumor CPT0125570009 203219670117_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 e9c698f6-6da3-43ab-976e-6f3ae017bc5f 433a90fdc35ee7474f1ea0b4cc9634d2 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.miRNA-Seq.S40_L005_R1.T C3L-02465 GBM miRNA-Seq tumor CPT0125570006 181119_UNC31-K00269_0165_AH27WCBBXY_CCGTCC_S40_L005_R1_001.unaln.bam 214530372 BAM S40_L005_R1 submitted_unaligned CPTAC3 aae13628-4093-4c01-938f-661e8741e983 c9c220147e39fd3cba1ba1be08098b08 {"aliquot_tag": "ALQ_142f8bc2", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.miRNA-Seq.T.hg38 C3L-02465 GBM miRNA-Seq tumor CPT0125570006 6c914cdc-ab48-4850-abec-484fa824f9f3_mirnaseq_gdc_realn.bam 237047784 BAM harmonized CPTAC3 08153e95-29f7-4524-a61d-21a46b3efa5e 701b0f2a2ba91b07db4b11dbf174119a {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.RNA-Seq.chimeric.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.chimeric.gdc_realn.bam 38635056 BAM chimeric harmonized CPTAC3 20622fe3-27e7-4593-b111-0f38d6fef4d0 238304c73720401ac2c9fa9887d7bc42 {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.RNA-Seq.genomic.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.genomic.gdc_realn.bam 9888082603 BAM genomic harmonized CPTAC3 b155c434-0075-4887-8abb-718adfceec66 85e179abcceb8a4fc9cc4f98aa203006 {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.RNA-Seq.S20_L005_R1.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R1_001.fastq.gz 4650716263 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 ac4f58b0-4652-4aba-bba6-62f1cd4660f4 7f15be544a0612549fdc502c850b08c8 {"aliquot_tag": "ALQ_142f8bc2", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.RNA-Seq.S20_L005_R2.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R2_001.fastq.gz 4773241781 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 806543ec-69d2-4461-8a3f-bbd40a94ddb2 4af94a62652582e8425fe1f32a4871ea {"aliquot_tag": "ALQ_142f8bc2", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.RNA-Seq.transcriptome.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.transcriptome.gdc_realn.bam 12223934142 BAM transcriptome harmonized CPTAC3 5dfa7ecc-2178-498e-bbab-d9544c59c0e0 b6f7434ebe2a49532d5795a90ad6f665 {"aliquot_tag": "ALQ_142f8bc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.WGS.N C3L-02465 GBM WGS blood_normal CPT0124250002 CPT0124250002.WholeGenome.RP-1303.bam 68413640457 BAM submitted_aligned CPTAC3 b9555383-4d63-4ec0-ac43-9fe6f82783a2 8730eede3469e5c135bf62c9e03eb627 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02465.WGS.N.hg38 C3L-02465 GBM WGS blood_normal CPT0124250002 f1a6dc62-ade8-4e25-bcf7-752ecbc4f7dc_wgs_gdc_realn.bam 100401110014 BAM harmonized CPTAC3 28431047-9ed6-4c05-85be-cca99883ae97 28f9a67bd04630059a80a8bd1347d849 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02465.WGS.T C3L-02465 GBM WGS tumor CPT0125570009 CPT0125570009.WholeGenome.RP-1303.bam 55547769252 BAM submitted_aligned CPTAC3 a462e70f-701b-4d8a-b014-8e3e6e75c068 32f5fdc8811bfb1be48a2f44f912ec3f {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.WGS.T.hg38 C3L-02465 GBM WGS tumor CPT0125570009 953ddd78-016b-47f4-8708-054f23481a45_wgs_gdc_realn.bam 80756863359 BAM harmonized CPTAC3 e919b6c7-d76f-44c1-a86f-7c732fce8858 1bd79bec68715071c71292aa869fb2a2 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.WXS.N C3L-02465 GBM WXS blood_normal CPT0124250002 CPT0124250002.WholeExome.RP-1303.bam 25403229812 BAM submitted_aligned CPTAC3 393ed771-7f85-49a7-9dbe-112f33630e26 74b3e3ef5fb29e0a833d15b585e0cc28 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02465.WXS.N.hg38 C3L-02465 GBM WXS blood_normal CPT0124250002 f1a6dc62-ade8-4e25-bcf7-752ecbc4f7dc_wxs_gdc_realn.bam 34705261693 BAM harmonized CPTAC3 d6e1f2b3-e517-4bc2-b974-459b0df11591 f190ba297b53e81f4fc6a46ea10175a4 {"aliquot_tag": "ALQ_d2f027b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02465.WXS.T C3L-02465 GBM WXS tumor CPT0125570009 CPT0125570009.WholeExome.RP-1303.bam 24485468319 BAM submitted_aligned CPTAC3 35065904-4c09-4bd5-91e0-1be879f75827 afd624cc84b96be7dc28b7bf9a71658b {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02465.WXS.T.hg38 C3L-02465 GBM WXS tumor CPT0125570009 953ddd78-016b-47f4-8708-054f23481a45_wxs_gdc_realn.bam 33103819653 BAM harmonized CPTAC3 e4bb7174-7993-4379-a9db-59e60eaa30c3 72dfc42f3fb240e45b1d5bf97a6bce06 {"aliquot_tag": "ALQ_84909653", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02468.MethArray.Green.T C3L-02468 UCEC Methylation_Array tumor CPT0126000009 203220070165_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 97810bac-311c-4123-8b02-8b591065045c e4fc15648b2324b1b1b5a103994c8ccb {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.MethArray.Red.T C3L-02468 UCEC Methylation_Array tumor CPT0126000009 203220070165_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 0a5d0d35-6dbe-438d-9294-c35bf99da09d f7d5211eff7a629abfe4df5b491e8db5 {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.miRNA-Seq.A.hg38 C3L-02468 UCEC miRNA-Seq tissue_normal CPT0126010009 56bf9fe1-d9b3-44a0-87f1-168e2671859c_mirnaseq_gdc_realn.bam 237406690 BAM harmonized CPTAC3 1d6d86bc-c301-48ab-a2be-9d5c8a518581 2893bb423ef8e6021b3656c466f679c4 {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.miRNA-Seq.S33_L003_R1.T C3L-02468 UCEC miRNA-Seq tumor CPT0126000006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGGCG_S33_L003_R1_001.unaln.bam 190674497 BAM S33_L003_R1 submitted_unaligned CPTAC3 95064159-5fbc-4b6f-8330-372f46046916 822fa399bcf1228aa3091db4761c820f {"aliquot_tag": "ALQ_c72adcfc", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.miRNA-Seq.S40_L003_R1.A C3L-02468 UCEC miRNA-Seq tissue_normal CPT0126010009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L003_R1_001.unaln.bam 207918122 BAM S40_L003_R1 submitted_unaligned CPTAC3 689df0b0-661f-4063-ace1-867ed18da27e 5bb3422a8b0bb5e729b58774d1d52432 {"aliquot_tag": "ALQ_6af5e8dd", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.miRNA-Seq.T.hg38 C3L-02468 UCEC miRNA-Seq tumor CPT0126000006 e032644a-8d97-4595-a4e9-47e4672d83cf_mirnaseq_gdc_realn.bam 214708805 BAM harmonized CPTAC3 93b32cd5-d554-4c0c-af3e-fed0db538757 2148d3b35503f159afb725c3a914c182 {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.chimeric.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.chimeric.gdc_realn.bam 45524821 BAM chimeric harmonized CPTAC3 759da733-2d79-49cb-8daa-74d3af6cc798 9a41d1a5eb2edc07f495f55d14ff3ecb {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.RNA-Seq.chimeric.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.chimeric.gdc_realn.bam 31781777 BAM chimeric harmonized CPTAC3 93d03dca-7551-4ea5-92c7-ce742b19d328 d6c67c0a8eb3b6ca76198039911e800d {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.chimeric.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.chimeric.gdc_realn.bam 217043747 BAM chimeric harmonized CPTAC3 698607e2-e428-4c8d-a4b9-c24df6709b56 6f40891fb224ab29ed00a2b0207993c8 {"aliquot_tag": "ALQ_d60ebcff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.genomic.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.genomic.gdc_realn.bam 8876468660 BAM genomic harmonized CPTAC3 06ce6265-3063-470d-9681-d87f3ff3843f 780293ea2b512f24c64ac2846db19b0d {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.RNA-Seq.genomic.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.genomic.gdc_realn.bam 7734627697 BAM genomic harmonized CPTAC3 ed417ff2-ae7b-429c-ab9c-64362feeb7ea e413a9a2a44c969a76ec189a7d8ecca8 {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.genomic.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.genomic.gdc_realn.bam 12878070423 BAM genomic harmonized CPTAC3 8fd94035-05ad-48e1-ab1f-7dc67b592c23 5ee24861308aa013072a3e238fa9c6a1 {"aliquot_tag": "ALQ_d60ebcff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.S18_R1.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R1_001.fastq.gz 8099689554 FASTQ S18_R1 submitted_unaligned CPTAC3 0d845a2c-7ceb-4d1d-9b29-11cf261142fc bb3a0cadd33e1da4ce820a5799f1a4b1 {"aliquot_tag": "ALQ_d60ebcff", "sample": "S18", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.S18_R2.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R2_001.fastq.gz 8517453393 FASTQ S18_R2 submitted_unaligned CPTAC3 a65d8e0f-7103-47b1-802b-56105978deb6 e000a5a64ba846b10ee412f785f6e366 {"aliquot_tag": "ALQ_d60ebcff", "sample": "S18", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.S24_L008_R1.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R1_001.fastq.gz 4057572434 FASTQ S24_L008_R1 submitted_unaligned CPTAC3 58ab7a47-f657-44d3-b62b-41bf5f3810c3 91e7cdca99148d65933dd387f8b5617b {"aliquot_tag": "ALQ_6af5e8dd", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.RNA-Seq.S24_L008_R2.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R2_001.fastq.gz 4140807993 FASTQ S24_L008_R2 submitted_unaligned CPTAC3 8d47d4f6-0bad-42d0-acb6-194bf1d0b874 4bbe198c4d9732527d83b6bfa9f1a916 {"aliquot_tag": "ALQ_6af5e8dd", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.RNA-Seq.S5_L002_R1.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3538324955 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 03e743a3-9e1d-4b19-876d-8aca16db36a6 a5a2dd99cfa466f9a06ba3ed342a18e3 {"aliquot_tag": "ALQ_c72adcfc", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.S5_L002_R2.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3897501067 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 68db2989-e11f-43ac-9aa3-49c7423d98d2 6c0fdac19d36be666ed24199782aa34c {"aliquot_tag": "ALQ_c72adcfc", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.transcriptome.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.transcriptome.gdc_realn.bam 11065543007 BAM transcriptome harmonized CPTAC3 361624f0-58f2-476d-9ae1-1e3dd848870d 735f917adfe9343012ed98204dc062a4 {"aliquot_tag": "ALQ_6af5e8dd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.RNA-Seq.transcriptome.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.transcriptome.gdc_realn.bam 9229055499 BAM transcriptome harmonized CPTAC3 ec87a02a-a963-4749-9f43-542bbebc7da2 9ad98133bb6b78d5580eae18c89da35c {"aliquot_tag": "ALQ_c72adcfc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.RNA-Seq.transcriptome.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.transcriptome.gdc_realn.bam 7767152690 BAM transcriptome harmonized CPTAC3 42dff721-f48b-4f09-8359-d202e6f18dd1 1d6d1ca3828f5f0c9145bfc92d229774 {"aliquot_tag": "ALQ_d60ebcff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.WGS.A C3L-02468 UCEC WGS tissue_normal CPT0126010006 CPT0126010006.WholeGenome.RP-1303.bam 65084689239 BAM submitted_aligned CPTAC3 66fceed9-4290-485f-b442-440082ff46ce 7c7ffa8a663c74593b74633eb0e9d520 {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.WGS.A.hg38 C3L-02468 UCEC WGS tissue_normal CPT0126010006 52c4f856-6e69-4ad8-b8c1-edae35bdf6a2_wgs_gdc_realn.bam 95958803137 BAM harmonized CPTAC3 e633e2a1-334f-4b7d-a19f-fcd155b6cdbd 4a95fdff250ec7855c88549ca8b6ac8f {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.WGS.N C3L-02468 UCEC WGS blood_normal CPT0124280002 CPT0124280002.WholeGenome.RP-1303.bam 61149041857 BAM submitted_aligned CPTAC3 9445c7a2-c585-4a52-b773-d9469fd14907 538ea5270bc598e8b27041b886622cc4 {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02468.WGS.N.hg38 C3L-02468 UCEC WGS blood_normal CPT0124280002 6dcbce3e-ba98-4bdd-b436-03c9a2e37ea4_wgs_gdc_realn.bam 87940528141 BAM harmonized CPTAC3 70ce63ec-5515-491d-90d5-83c6f9a13010 2bc7e3ca1fd6ecda0f0fd4cea53ccdc4 {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02468.WGS.T C3L-02468 UCEC WGS tumor CPT0126000009 CPT0126000009.WholeGenome.RP-1303.bam 56995565060 BAM submitted_aligned CPTAC3 6f76ddee-0294-48e6-af34-1d99952b09e1 d1d5b7a798708cd6e56c83f1f49c68ec {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.WGS.T.hg38 C3L-02468 UCEC WGS tumor CPT0126000009 c7b1a2b5-e019-4e2e-a4f5-f0431a4a4260_wgs_gdc_realn.bam 84130853056 BAM harmonized CPTAC3 2dfed7a8-8b92-4382-915e-b94860938a25 689fc03a4ef59248f8ebea912405f788 {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.WXS.A C3L-02468 UCEC WXS tissue_normal CPT0126010006 CPT0126010006.WholeExome.RP-1303.bam 20581603832 BAM submitted_aligned CPTAC3 f1a5e9a9-6a0b-4a78-9af4-e07eefa65e4a e09346bbb5cefb725c27681601d0b83f {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.WXS.A.hg38 C3L-02468 UCEC WXS tissue_normal CPT0126010006 52c4f856-6e69-4ad8-b8c1-edae35bdf6a2_wxs_gdc_realn.bam 27964495490 BAM harmonized CPTAC3 4f3ce2a5-239e-4d6f-9b5b-543ef12a729f 0da1ea2241fe0eaaa3a31c1329d5f3ff {"aliquot_tag": "ALQ_fa4af54c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02468.WXS.N C3L-02468 UCEC WXS blood_normal CPT0124280002 CPT0124280002.WholeExome.RP-1303.bam 21192188406 BAM submitted_aligned CPTAC3 70006ff4-4fe1-465d-95c7-3f58ea3752aa 2b3cc14126d563852f2519bb777570cf {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02468.WXS.N.hg38 C3L-02468 UCEC WXS blood_normal CPT0124280002 6dcbce3e-ba98-4bdd-b436-03c9a2e37ea4_wxs_gdc_realn.bam 29888947961 BAM harmonized CPTAC3 ffe64a6f-c04d-467b-bbee-d7c093aaa590 3427b36ccb2ee161122bf048e7443cce {"aliquot_tag": "ALQ_2a60e306", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02468.WXS.T C3L-02468 UCEC WXS tumor CPT0126000009 CPT0126000009.WholeExome.RP-1303.bam 26652865559 BAM submitted_aligned CPTAC3 51d717c2-ac51-40f3-9090-2bdf24718fa5 bf6f7094d79d17b5ba374beeb590c00a {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02468.WXS.T.hg38 C3L-02468 UCEC WXS tumor CPT0126000009 c7b1a2b5-e019-4e2e-a4f5-f0431a4a4260_wxs_gdc_realn.bam 35813263638 BAM harmonized CPTAC3 13134508-53d4-495a-ae7f-120bae97c253 3875cf7e31f5a9dafa6072b1e5b3275a {"aliquot_tag": "ALQ_5795c16d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02504.MethArray.Green.T C3L-02504 GBM Methylation_Array tumor CPT0175060006 203027390089_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e757c2fe-5351-4e86-a5d7-14988fefd71b 18048159f15ac7aaba7132ce7c180cf4 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.MethArray.Red.T C3L-02504 GBM Methylation_Array tumor CPT0175060006 203027390089_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 dd8610fb-9518-4155-a29a-2336209bf909 8a39be526f94f7d07f17d0574ecc5fe2 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.miRNA-Seq.S11_L005_R1.T C3L-02504 GBM miRNA-Seq tumor CPT0175060009 181113_UNC31-K00269_0164_AH23NNBBXY_CATTTT_S11_L005_R1_001.unaln.bam 294859036 BAM S11_L005_R1 submitted_unaligned CPTAC3 59c0962c-44ca-451f-95e4-0314b121f99e c7db61e8161648571565e13cc8f2c1da {"aliquot_tag": "ALQ_a1dd2034", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.miRNA-Seq.T.hg38 C3L-02504 GBM miRNA-Seq tumor CPT0175060009 3c4160dd-7b99-4540-ba81-87bd64d21188_mirnaseq_gdc_realn.bam 336421967 BAM harmonized CPTAC3 26b919db-7001-40a2-8890-f54983a84034 6f700ff65163c358a6031d0c1b1dbf93 {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.RNA-Seq.chimeric.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.chimeric.gdc_realn.bam 37041682 BAM chimeric harmonized CPTAC3 b6a0e339-3f9e-41db-bf44-2b90685acba8 fbfec2be9176d00b2f337d0aafa8c1e0 {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.RNA-Seq.genomic.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.genomic.gdc_realn.bam 8834070426 BAM genomic harmonized CPTAC3 ab410031-560c-428a-9f17-c8ff78f960d8 6788bbd05ced70b88aff48f48de6038a {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.RNA-Seq.S26_L007_R1.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R1_001.fastq.gz 3824763022 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 610f16a0-bf50-479f-879e-175a725fbca8 6fbc82dca5205d8c415a2733a2dc9f22 {"aliquot_tag": "ALQ_a1dd2034", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.RNA-Seq.S26_L007_R2.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R2_001.fastq.gz 4331599960 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 03bfaa3f-e68a-46a5-90e3-5af109ded101 fb515e04a05623ed0ccd3dc2ce47c0b1 {"aliquot_tag": "ALQ_a1dd2034", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.RNA-Seq.transcriptome.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.transcriptome.gdc_realn.bam 9718559532 BAM transcriptome harmonized CPTAC3 9ab37241-46f3-48f0-9f13-7761e32c0241 edaa87925b6d70852110462c7f3a577f {"aliquot_tag": "ALQ_a1dd2034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.WGS.N C3L-02504 GBM WGS blood_normal CPT0175520002 CPT0175520002.WholeGenome.RP-1303.bam 64059792273 BAM submitted_aligned CPTAC3 f2d58309-c05c-4593-8ce5-a71a291680d3 3c642f9ccc3e463567f18facd684c8c8 {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02504.WGS.N.hg38 C3L-02504 GBM WGS blood_normal CPT0175520002 40f6448c-51b7-499e-8c86-300966f87b99_wgs_gdc_realn.bam 91176818503 BAM harmonized CPTAC3 d4ff5445-c045-4bd0-80da-bbfb01175a2b fcb2cc8536c8271a39bb0f817e59b313 {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02504.WGS.T C3L-02504 GBM WGS tumor CPT0175060006 CPT0175060006.WholeGenome.RP-1303.bam 62356913341 BAM submitted_aligned CPTAC3 00aad068-846d-4e56-8a4d-c7459f41aa19 6da01c5e1980c5a2a61b34967c4789b2 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.WGS.T.hg38 C3L-02504 GBM WGS tumor CPT0175060006 df794db3-ed91-4798-a664-49ff826f1131_wgs_gdc_realn.bam 90359529343 BAM harmonized CPTAC3 ffa548b6-0285-432c-bb41-fd5d5df3b546 c737bfe427b0b2bbd340488abab0a950 {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.WXS.N C3L-02504 GBM WXS blood_normal CPT0175520002 CPT0175520002.WholeExome.RP-1303.bam 28884093069 BAM submitted_aligned CPTAC3 09677176-e18a-43c9-b505-e452a53f1fc6 ed950536ded90846c9fe3ab929393ddc {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02504.WXS.N.hg38 C3L-02504 GBM WXS blood_normal CPT0175520002 40f6448c-51b7-499e-8c86-300966f87b99_wxs_gdc_realn.bam 38502204845 BAM harmonized CPTAC3 ff07f11b-862a-4137-8e9a-0a609735348c 7b86247cc9625c1811ceb79516e642b6 {"aliquot_tag": "ALQ_9342cecf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02504.WXS.T C3L-02504 GBM WXS tumor CPT0175060006 CPT0175060006.WholeExome.RP-1303.bam 24975223263 BAM submitted_aligned CPTAC3 e3cca691-ea08-4a2b-9a55-301b3b44543f d9c0621dd82650210db0586eeeabe72f {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02504.WXS.T.hg38 C3L-02504 GBM WXS tumor CPT0175060006 df794db3-ed91-4798-a664-49ff826f1131_wxs_gdc_realn.bam 34169597250 BAM harmonized CPTAC3 f04a4040-c88c-4925-9881-a4542b13c817 4e5da355ddfd4c34238207dbbc73940c {"aliquot_tag": "ALQ_31623da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.MethArray.Green.A C3L-02508 LUAD Methylation_Array tissue_normal CPT0125830009 203028200014_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 729d91aa-2b94-40c3-8ed4-a36e73d319a0 0174e126f9fddc3af79c97dd23596546 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.MethArray.Green.T C3L-02508 LUAD Methylation_Array tumor CPT0125810009 202234380024_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 5d75f0d0-a85e-428b-a757-1307e500ea59 b6d6afa7bd8dec7af28832b5269406dd {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.MethArray.Red.A C3L-02508 LUAD Methylation_Array tissue_normal CPT0125830009 203028200014_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 af00f4fe-dc38-4441-af20-958368508020 e0c5e23eeedd2fc8ea72519d2ad1e6c9 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.MethArray.Red.T C3L-02508 LUAD Methylation_Array tumor CPT0125810009 202234380024_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 31fd4f67-b178-499c-a4f7-cb3abfc65d7f 5d738221dfdc94c655eb944ebf4bd0bd {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.miRNA-Seq.A.hg38 C3L-02508 LUAD miRNA-Seq tissue_normal CPT0125830006 8516be4d-b654-421c-8f5e-a20796c22586_mirnaseq_gdc_realn.bam 254043971 BAM harmonized CPTAC3 e3a745ca-c910-42cb-8e03-24abb258bfc4 ed2e402af0edcd7b7d2b5547c67a7a27 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.miRNA-Seq.S18_L007_R1.A C3L-02508 LUAD miRNA-Seq tissue_normal CPT0125830006 181108_UNC31-K00269_0162_AH255GBBXY_TAATCG_S18_L007_R1_001.unaln.bam 233764040 BAM S18_L007_R1 submitted_unaligned CPTAC3 0cf6d1bf-26fe-4038-b7a9-e2dfb056ee00 11e99babb0ceed21567bf2b805d366b9 {"aliquot_tag": "ALQ_5d313edc", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.miRNA-Seq.S46_L003_R1.T C3L-02508 LUAD miRNA-Seq tumor CPT0125810006 181119_UNC31-K00269_0165_AH27WCBBXY_CGTACG_S46_L003_R1_001.unaln.bam 269517095 BAM S46_L003_R1 submitted_unaligned CPTAC3 116598f0-adff-415e-80c2-d160a6867a32 6152d63ac449c09e48007dc010515a58 {"aliquot_tag": "ALQ_27f16dbc", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.miRNA-Seq.T.hg38 C3L-02508 LUAD miRNA-Seq tumor CPT0125810006 938e1712-0272-48f8-9ff5-297925c497ff_mirnaseq_gdc_realn.bam 302402199 BAM harmonized CPTAC3 7f4cf57d-7112-40d3-8355-6c906d243d74 353dc4f43be6b14ac8ead7255f14e95b {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.RNA-Seq.chimeric.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.chimeric.gdc_realn.bam 60248610 BAM chimeric harmonized CPTAC3 bdc420f5-93e5-4e40-8beb-7910267fe0d3 21def2b03a1f730de7043d5a90c9b004 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.RNA-Seq.chimeric.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.chimeric.gdc_realn.bam 79200908 BAM chimeric harmonized CPTAC3 48993da0-76d5-423c-9ae6-e04cb5eb6c6c 9f37c147045847abba58d7291ff87136 {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.RNA-Seq.genomic.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.genomic.gdc_realn.bam 8840913347 BAM genomic harmonized CPTAC3 dff0b361-72d9-4f9c-9981-5a5b437aab8f 5c882511f019469cf30a3496a515fac2 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.RNA-Seq.genomic.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.genomic.gdc_realn.bam 9514060873 BAM genomic harmonized CPTAC3 568682b4-7cbb-407e-ae6b-9984fea69a68 364874893e7b9756dbd4e11b12680f92 {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.RNA-Seq.S13_L004_R1.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 3978809521 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 051c1a4d-3903-4116-96b0-2b43064c545a d8107c5c8d830706f7edd251d7469d74 {"aliquot_tag": "ALQ_27f16dbc", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.RNA-Seq.S13_L004_R2.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4504315558 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 072ecd6f-d4b8-4559-83fb-6e11d63c5c40 538ea4bc16b523883fa3013d6df1f492 {"aliquot_tag": "ALQ_27f16dbc", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.RNA-Seq.S8_L002_R1.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R1_001.fastq.gz 4226756178 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 754e4fa4-7970-4f97-927b-c5554a581b1f 544dd274ec2a095881632b18dc95df44 {"aliquot_tag": "ALQ_5d313edc", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.RNA-Seq.S8_L002_R2.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R2_001.fastq.gz 4225613884 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 c62c71c6-583b-4436-a075-f79dc12be2ff c47370937b7c6eb683be76a7a28b71e5 {"aliquot_tag": "ALQ_5d313edc", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.RNA-Seq.transcriptome.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.transcriptome.gdc_realn.bam 9458256276 BAM transcriptome harmonized CPTAC3 cd2e9c8c-bf12-481d-a632-5215f7767d40 267719625051ea20d6dc464295e75c76 {"aliquot_tag": "ALQ_5d313edc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.RNA-Seq.transcriptome.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.transcriptome.gdc_realn.bam 14028507605 BAM transcriptome harmonized CPTAC3 0ae7d5e9-a70f-478a-a552-8cd0bb5bee37 ad2bac014f1b978c749fa9e781b9e8f8 {"aliquot_tag": "ALQ_27f16dbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.WGS.A C3L-02508 LUAD WGS tissue_normal CPT0125830009 CPT0125830009.WholeGenome.RP-1303.bam 60298653057 BAM submitted_aligned CPTAC3 1102d0b1-cdd7-4f7e-80d4-35de9f2875ba e71cdfdcba7aca01b8b03f45f5645651 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.WGS.A.hg38 C3L-02508 LUAD WGS tissue_normal CPT0125830009 0b76afcf-e5dc-45d5-9d4f-45eb93e83b71_wgs_gdc_realn.bam 87951380013 BAM harmonized CPTAC3 e4cfae1b-9690-471e-8ebc-fa2419c2691c f53b953b757e55c5dbe4f766dbc00be1 {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.WGS.N C3L-02508 LUAD WGS blood_normal CPT0124270002 CPT0124270002.WholeGenome.RP-1303.bam 60632759447 BAM submitted_aligned CPTAC3 bb5185c2-43b4-40d0-b9e3-1a20f422eccd 18dbfd8a95bd0a513768258f6f19e18a {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02508.WGS.N.hg38 C3L-02508 LUAD WGS blood_normal CPT0124270002 e6224d19-f9dd-498b-bb7e-5c7fb847dd52_wgs_gdc_realn.bam 89294281274 BAM harmonized CPTAC3 2509fb9f-8364-40ac-a019-9ad013618340 af65ab01a46c6ced5071969c5bf41caa {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02508.WGS.T C3L-02508 LUAD WGS tumor CPT0125810009 CPT0125810009.WholeGenome.RP-1303.bam 57060223859 BAM submitted_aligned CPTAC3 3766f19a-b0e1-4575-89a4-33481def60bd df59e5a4f242f21e188504b0cce72dcf {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.WGS.T.hg38 C3L-02508 LUAD WGS tumor CPT0125810009 0196af9e-08f9-41a7-9f95-38ccf723f916_wgs_gdc_realn.bam 83452937597 BAM harmonized CPTAC3 8fab451a-8376-46f4-bcfc-ee673c3a5353 ea29c686e4d341f40f95594fe20457de {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.WXS.A C3L-02508 LUAD WXS tissue_normal CPT0125830009 CPT0125830009.WholeExome.RP-1303.bam 44825747014 BAM submitted_aligned CPTAC3 a691d4a1-40db-4cad-90d0-8fec8bc0f55a f15992d90eba731ae750b12ef9285aeb {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.WXS.A.hg38 C3L-02508 LUAD WXS tissue_normal CPT0125830009 0b76afcf-e5dc-45d5-9d4f-45eb93e83b71_wxs_gdc_realn.bam 60878714696 BAM harmonized CPTAC3 73327dc1-eea4-42fe-884b-0773b974af81 2498b92b0f473db9114881b12ee2de9a {"aliquot_tag": "ALQ_cd8e234d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02508.WXS.N C3L-02508 LUAD WXS blood_normal CPT0124270002 CPT0124270002.WholeExome.RP-1303.bam 30615967730 BAM submitted_aligned CPTAC3 a80bbd35-1587-4b89-8ea7-c805d229d088 c30af53e12b3d818b8264cc204904e67 {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02508.WXS.N.hg38 C3L-02508 LUAD WXS blood_normal CPT0124270002 e6224d19-f9dd-498b-bb7e-5c7fb847dd52_wxs_gdc_realn.bam 41788538764 BAM harmonized CPTAC3 9d738aaf-635d-49a5-893f-42852075b115 e21e6ae6a1204dc5f9c4252f7eba9823 {"aliquot_tag": "ALQ_a83074d7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02508.WXS.T C3L-02508 LUAD WXS tumor CPT0125810009 CPT0125810009.WholeExome.RP-1303.bam 40421532475 BAM submitted_aligned CPTAC3 16a84051-89d4-4847-9805-0b2683160916 7b184718f5db09f639cd1547c30c9db0 {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02508.WXS.T.hg38 C3L-02508 LUAD WXS tumor CPT0125810009 0196af9e-08f9-41a7-9f95-38ccf723f916_wxs_gdc_realn.bam 56319684986 BAM harmonized CPTAC3 84e915a3-de8a-4bd4-b3ed-e3467f424e88 0ddd2ea23efe80f3e2d0c0436e60bf17 {"aliquot_tag": "ALQ_b74e702d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.MethArray.Green.A C3L-02513 LUAD Methylation_Array tissue_normal CPT0210250006 203561450014_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 a8905a5c-6d6a-4108-9331-6e96c0b1bcb9 4b9a5cb3313e0b33243fa3a66a89896d {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.MethArray.Green.T C3L-02513 LUAD Methylation_Array tumor CPT0210240006 203561450062_R04C01_Grn.idat 13676217 IDAT Green NA CPTAC3 6f0767f0-b2be-4f31-aba4-7221eee3369e 9399a874174ef48a718ec605640bbd5d {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.MethArray.Red.A C3L-02513 LUAD Methylation_Array tissue_normal CPT0210250006 203561450014_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 7afa0eeb-bfb5-4887-9db3-9fccda9c1c6d 26aba1eeef1647cf0cb04b9e72a72aae {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.MethArray.Red.T C3L-02513 LUAD Methylation_Array tumor CPT0210240006 203561450062_R04C01_Red.idat 13676217 IDAT Red NA CPTAC3 48875df9-d612-42a9-9f07-b47a2b252030 bb33bea95487115a9c533f5fdddc7ab1 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.miRNA-Seq.A.hg38 C3L-02513 LUAD miRNA-Seq tissue_normal CPT0210250009 de550522-e5de-4ade-931c-98ded5889498_mirnaseq_gdc_realn.bam 253883690 BAM harmonized CPTAC3 fa7eb2b1-e61a-409b-85b0-0eee93a09ec3 26aaf4f6e3c36b58d9fa361caaadd54c {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.miRNA-Seq.S48_L006_R1.A C3L-02513 LUAD miRNA-Seq tissue_normal CPT0210250009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCCCGA_S48_L006_R1_001.unaln.bam 224911126 BAM S48_L006_R1 submitted_unaligned CPTAC3 75357161-bb85-4ade-9c96-be204d9bd61f a075c60b08e720e4055a9d8039418508 {"aliquot_tag": "ALQ_66fe10a", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.miRNA-Seq.S6_L005_R1.T C3L-02513 LUAD miRNA-Seq tumor CPT0210240009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAGCTT_S6_L005_R1_001.unaln.bam 249837355 BAM S6_L005_R1 submitted_unaligned CPTAC3 7fc73644-6030-44bb-94be-e68ded9c59f3 ef395630cef631d154468a626b751490 {"aliquot_tag": "ALQ_3b0fc8ba", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.miRNA-Seq.T.hg38 C3L-02513 LUAD miRNA-Seq tumor CPT0210240009 104372e6-69d4-485c-913b-7769b529d99c_mirnaseq_gdc_realn.bam 279291587 BAM harmonized CPTAC3 a4f8b867-e880-4a11-9077-693487edb01e e526a05dcca679728f790faddbd4de0d {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.RNA-Seq.chimeric.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.chimeric.gdc_realn.bam 35192550 BAM chimeric harmonized CPTAC3 cca24d49-2e82-4b95-a209-4ff0988b06fc e881b3f88e1e56d0b0951ff280fa9385 {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.RNA-Seq.chimeric.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.chimeric.gdc_realn.bam 37320818 BAM chimeric harmonized CPTAC3 805315da-7260-4db6-93bd-3a4502c49e35 b290a6ab8bd81bdcdb7de50287d8c7fa {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.RNA-Seq.genomic.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.genomic.gdc_realn.bam 13359866335 BAM genomic harmonized CPTAC3 d2431a63-59c9-49ea-8f45-248d5aa5a8b8 5db731c19eef0fc8b2662043abd0ec2b {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.RNA-Seq.genomic.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.genomic.gdc_realn.bam 13762854165 BAM genomic harmonized CPTAC3 dd450945-c98e-41bb-ad90-e877cb007d5e 180fb9d5ea971cd95a3ecd2dba2cc960 {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.RNA-Seq.S14_L004_R1.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R1_001.fastq.gz 4680465952 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 c9fa24c1-4c5e-4070-af8e-a2e04832e2e7 1d8906cd3c6c00e1da8e8e55ad67486a {"aliquot_tag": "ALQ_3b0fc8ba", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.RNA-Seq.S14_L004_R2.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R2_001.fastq.gz 5124110057 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 a79e8d3b-317a-4325-ac41-77ed676fd734 db95d62b4eca9c1ebf57b353137e718b {"aliquot_tag": "ALQ_3b0fc8ba", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.RNA-Seq.S1_L001_R1.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4876689160 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 02fa8343-2a32-4650-852a-ccdf0199ba6e 0ae5e6037da3d7d151c0bb128ad84dd7 {"aliquot_tag": "ALQ_66fe10a", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.RNA-Seq.S1_L001_R2.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 5218746671 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 90e73ecf-0992-4d89-8c1f-430d20dd5297 1789689f5b61076afcc32ea132c910b2 {"aliquot_tag": "ALQ_66fe10a", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.RNA-Seq.transcriptome.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.transcriptome.gdc_realn.bam 10078102973 BAM transcriptome harmonized CPTAC3 ab788d89-2b5f-49e6-a095-fc521868ef44 ce7b9336aeaad0cc90c61f8677002ad1 {"aliquot_tag": "ALQ_66fe10a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.RNA-Seq.transcriptome.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.transcriptome.gdc_realn.bam 10896734772 BAM transcriptome harmonized CPTAC3 b4454499-fd69-4eba-bb38-e3c787ce2d52 7a38a7e2aae029c37e93760d8c9cd728 {"aliquot_tag": "ALQ_3b0fc8ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.WGS.N C3L-02513 LUAD WGS blood_normal CPT0217640002 CPT0217640002.WholeGenome.RP-1303.bam 62477287554 BAM submitted_aligned CPTAC3 0188e621-7f55-4d70-b4d0-b246d1588cdb c590ca6aecf26649469bfab418280dac {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02513.WGS.N.hg38 C3L-02513 LUAD WGS blood_normal CPT0217640002 74edafa1-4a50-4008-86e2-a9eb190d6fa8_wgs_gdc_realn.bam 90996855976 BAM harmonized CPTAC3 0716024b-24f0-4611-a802-f225f75aaaab b49ff15baaf06baaf746a2d0626f379c {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02513.WGS.T C3L-02513 LUAD WGS tumor CPT0210240006 CPT0210240006.WholeGenome.RP-1303.bam 55491391384 BAM submitted_aligned CPTAC3 4fe02dc6-7114-48ae-b819-78f303aebd36 6d4636439d275e80654ae59673b663c8 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.WGS.T.hg38 C3L-02513 LUAD WGS tumor CPT0210240006 f08ae7c2-a6f9-4303-b65d-50f8313241e5_wgs_gdc_realn.bam 81113423740 BAM harmonized CPTAC3 9642af12-32b3-442e-99ca-1fdde7961c88 be9389c2ed1a6db37c63ac86e267799e {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.WXS.A C3L-02513 LUAD WXS tissue_normal CPT0210250006 CPT0210250006.WholeExome.RP-1303.bam 26282907819 BAM submitted_aligned CPTAC3 225e4392-5cf9-4f34-a66c-ef7b985dbd0d ffaf641ecee41ca11d6f15fa1e8b72b0 {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.WXS.A.hg38 C3L-02513 LUAD WXS tissue_normal CPT0210250006 85b0ac9e-da5d-4169-9e15-0d5dd7f5a502_wxs_gdc_realn.bam 36165515792 BAM harmonized CPTAC3 8f6571ca-9a3c-400b-a929-f12ce8f1c99e 155126413236938d7d2d371ec7b0b31d {"aliquot_tag": "ALQ_96d0fc9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02513.WXS.N C3L-02513 LUAD WXS blood_normal CPT0217640002 CPT0217640002.WholeExome.RP-1303.bam 31693634817 BAM submitted_aligned CPTAC3 382528c9-58ba-4df3-88d7-fe7de3469732 29fdbcdf3dfba02d4a0b25853e3c1d39 {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02513.WXS.N.hg38 C3L-02513 LUAD WXS blood_normal CPT0217640002 74edafa1-4a50-4008-86e2-a9eb190d6fa8_wxs_gdc_realn.bam 43743090733 BAM harmonized CPTAC3 4875073d-1a0c-47d5-83bc-78bfff58baa3 e36c11147e60307d0b3566f4a012108a {"aliquot_tag": "ALQ_f2eb6daa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02513.WXS.T C3L-02513 LUAD WXS tumor CPT0210240006 CPT0210240006.WholeExome.RP-1303.bam 27141489265 BAM submitted_aligned CPTAC3 7bbfb444-c6af-47ef-9d28-4dac44b03571 bb34ebeb4ece25efa97349bccf6e86e4 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02513.WXS.T.hg38 C3L-02513 LUAD WXS tumor CPT0210240006 f08ae7c2-a6f9-4303-b65d-50f8313241e5_wxs_gdc_realn.bam 37512482813 BAM harmonized CPTAC3 7510a94f-e8d3-451a-aad7-41271d2c8da6 94203925883db4af029193516183bbc7 {"aliquot_tag": "ALQ_abb0d52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.MethArray.Green.A C3L-02515 LUAD Methylation_Array tissue_normal CPT0169050006 203561620049_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7f2f35da-010d-4677-b436-7a91297fdfb9 cb082f7d6e38d9862e6bedda004514dd {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.MethArray.Green.T C3L-02515 LUAD Methylation_Array tumor CPT0169040006 203561620050_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f0c91f09-5bc2-43fc-8bc2-7c3eadc98cc5 af5e64e6492e90320e3fde63d4c262d7 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.MethArray.Red.A C3L-02515 LUAD Methylation_Array tissue_normal CPT0169050006 203561620049_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 3ec8a7e8-c7fe-4ebe-84a2-277b6d16107f 360ad12d79d7c8dfabaed32d860310ee {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.MethArray.Red.T C3L-02515 LUAD Methylation_Array tumor CPT0169040006 203561620050_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 fd54dd82-4581-47d6-924d-9f6ef7296e67 7e799a51c52a8813ea7d73858ad1f806 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.miRNA-Seq.A.hg38 C3L-02515 LUAD miRNA-Seq tissue_normal CPT0169050009 f462837a-d82d-48c5-837b-d60f3ba94e24_mirnaseq_gdc_realn.bam 228949801 BAM harmonized CPTAC3 36030b4a-807f-46a5-a99f-b58793d35114 e709c787262563694290491d5412095e {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.miRNA-Seq.S17_L005_R1.T C3L-02515 LUAD miRNA-Seq tumor CPT0169040009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTTTCG_S17_L005_R1_001.unaln.bam 192795633 BAM S17_L005_R1 submitted_unaligned CPTAC3 68782282-f447-4289-8465-fc77bdf021b5 aae75a98ebf801a8a953e9b775588460 {"aliquot_tag": "ALQ_d01719be", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.miRNA-Seq.S32_L007_R1.A C3L-02515 LUAD miRNA-Seq tissue_normal CPT0169050009 190712_UNC32-K00270_0192_BH7HL3BBXY_GATCAG_S32_L007_R1_001.unaln.bam 199380252 BAM S32_L007_R1 submitted_unaligned CPTAC3 7604fde5-5928-4dff-b0f8-da90966f5786 43ad23c64f798b2adb4663bf6aaf9878 {"aliquot_tag": "ALQ_ed77300e", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.miRNA-Seq.T.hg38 C3L-02515 LUAD miRNA-Seq tumor CPT0169040009 5490b44a-b1ad-4577-876b-45de6f8aa9d2_mirnaseq_gdc_realn.bam 212933420 BAM harmonized CPTAC3 8db2df46-f25e-4167-919b-32d6e07e070c 01c179fbb68b83e113ddab1bb3ae4fdb {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.RNA-Seq.chimeric.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.chimeric.gdc_realn.bam 62273895 BAM chimeric harmonized CPTAC3 8d8710c0-4e44-43c9-8fce-bbcca3ecc597 038dc9207cfd427c729ffe16b44c14ca {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.RNA-Seq.chimeric.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.chimeric.gdc_realn.bam 34873004 BAM chimeric harmonized CPTAC3 a0dfa370-73de-413e-a7f6-994e12cc9bb8 eab8f6b1e331de54293085ffbab017c3 {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.RNA-Seq.genomic.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.genomic.gdc_realn.bam 6583297441 BAM genomic harmonized CPTAC3 374c2a69-ccc4-4325-91db-66a642ef1d15 a6b2c6a569cbc859a602418d58006ac4 {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.RNA-Seq.genomic.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.genomic.gdc_realn.bam 13870033571 BAM genomic harmonized CPTAC3 e09911bf-8735-45b6-b708-f4fd2b483972 ca5b6108e283dbcedeff083bceb9e5ec {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.RNA-Seq.S3_L001_R1.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R1_001.fastq.gz 4328266410 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 d30961dd-d56d-4dfd-8876-010b32a92c9e 571035660fe76ffc4e3c44339b0a4f72 {"aliquot_tag": "ALQ_d01719be", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.RNA-Seq.S3_L001_R2.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R2_001.fastq.gz 5015581215 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 1621cf0d-6ab3-44bb-b617-4606fba642b0 5da36a1da09dabc6c0dbb1fe8af3972e {"aliquot_tag": "ALQ_d01719be", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.RNA-Seq.S6_L002_R1.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R1_001.fastq.gz 2719163841 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 329f99fe-02fb-4a00-9470-e6bc43234b59 c6dae51e1199e60266c77f3f91168d96 {"aliquot_tag": "ALQ_ed77300e", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.RNA-Seq.S6_L002_R2.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R2_001.fastq.gz 3041179897 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 b1412293-32c8-4901-96f6-48d7cae2cc8e f4e0d88c507b24234cd8fedf2f5338ed {"aliquot_tag": "ALQ_ed77300e", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.RNA-Seq.transcriptome.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.transcriptome.gdc_realn.bam 6168076572 BAM transcriptome harmonized CPTAC3 f0efcb5c-7a50-4e03-854f-12040dfa188f 81070844f4a700db859085f5f5b48e69 {"aliquot_tag": "ALQ_ed77300e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.RNA-Seq.transcriptome.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.transcriptome.gdc_realn.bam 9352754076 BAM transcriptome harmonized CPTAC3 a645df83-e511-4883-a334-e21214d68a27 bcbc9b6ac1c655253069fbaf58cf0f46 {"aliquot_tag": "ALQ_d01719be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.WGS.N C3L-02515 LUAD WGS blood_normal CPT0167510002 CPT0167510002.WholeGenome.RP-1303.bam 63731998499 BAM submitted_aligned CPTAC3 3efbe2b0-c230-4ed3-b3eb-a4bafb200d92 bdbfddf83d8e0be33f4caeef7bfa9044 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02515.WGS.N.hg38 C3L-02515 LUAD WGS blood_normal CPT0167510002 59251b1e-8bc0-4f5d-a9f9-47bd64d6442d_wgs_gdc_realn.bam 92018912558 BAM harmonized CPTAC3 183894e5-ccfb-4f93-bbd3-aa80b13bf943 7e31c5f3142f347bbd72a26714de8ac6 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02515.WGS.T C3L-02515 LUAD WGS tumor CPT0169040006 CPT0169040006.WholeGenome.RP-1303.bam 68933764701 BAM submitted_aligned CPTAC3 8b33d5de-c8f8-4582-9f82-f95832085384 31811b333352a042b6052371a9bc73af {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.WGS.T.hg38 C3L-02515 LUAD WGS tumor CPT0169040006 0d79013b-c3d2-48fc-ad8a-9eb8427260bf_wgs_gdc_realn.bam 102541987186 BAM harmonized CPTAC3 89cc1441-cfcb-406c-99dd-9190b189b76b 2278d411b337bc5086987c820e089450 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.WXS.A C3L-02515 LUAD WXS tissue_normal CPT0169050006 CPT0169050006.WholeExome.RP-1303.bam 22697043854 BAM submitted_aligned CPTAC3 f0801a31-5aa6-4fb6-ad46-ea9e24c43b14 4a30c5b6af35f47f0f36f06b158b7bcd {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.WXS.A.hg38 C3L-02515 LUAD WXS tissue_normal CPT0169050006 97ea95f3-5254-4980-a446-5c4045593b86_wxs_gdc_realn.bam 31943764267 BAM harmonized CPTAC3 52c94e5a-a4f0-403a-ae4a-98ad11ee6154 78d931ecf1a17d6591d752c4be6cac90 {"aliquot_tag": "ALQ_7dc82d9f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02515.WXS.N C3L-02515 LUAD WXS blood_normal CPT0167510002 CPT0167510002.WholeExome.RP-1303.bam 27248261900 BAM submitted_aligned CPTAC3 bbef5368-6eaf-4c7c-a5bd-d4ac73715bac 83316d210b629cc570bb32eec58fa630 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02515.WXS.N.hg38 C3L-02515 LUAD WXS blood_normal CPT0167510002 59251b1e-8bc0-4f5d-a9f9-47bd64d6442d_wxs_gdc_realn.bam 38014276046 BAM harmonized CPTAC3 e46c9137-6f97-4aa2-987d-49a6fd52a1ed 021ef10952f30a5858ae4e6622dafa82 {"aliquot_tag": "ALQ_8fd7a5a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02515.WXS.T C3L-02515 LUAD WXS tumor CPT0169040006 CPT0169040006.WholeExome.RP-1303.bam 27654686586 BAM submitted_aligned CPTAC3 69767576-2fbd-42c0-8802-a5b87ad7e1b5 8ed028023c11fc93556761a689796f6b {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02515.WXS.T.hg38 C3L-02515 LUAD WXS tumor CPT0169040006 0d79013b-c3d2-48fc-ad8a-9eb8427260bf_wxs_gdc_realn.bam 39196689830 BAM harmonized CPTAC3 e6407d89-b2e1-46f4-8428-a65f898589c5 6df8cb0a679e175b5325a03d7b56f897 {"aliquot_tag": "ALQ_40a8042f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.MethArray.Green.T C3L-02542 GBM Methylation_Array tumor CPT0161730006 203027390078_R07C01_Grn.idat 13676227 IDAT Green NA CPTAC3 7a42ee10-3bff-4eab-a624-5a0a96ec8b66 884129d2bea6d505a7fef348d7981f1c {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.MethArray.Red.T C3L-02542 GBM Methylation_Array tumor CPT0161730006 203027390078_R07C01_Red.idat 13676227 IDAT Red NA CPTAC3 28375e29-7a4e-4da9-8af1-a3f86aaee102 7dbee8b18dfbc023f180b32000c0ba26 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.miRNA-Seq.S8_L001_R1.T C3L-02542 GBM miRNA-Seq tumor CPT0161730009 181119_UNC31-K00269_0165_AH27WCBBXY_CACTCA_S8_L001_R1_001.unaln.bam 146617757 BAM S8_L001_R1 submitted_unaligned CPTAC3 82fba379-9c4e-4e45-84cb-a14159a04c7d 1773f32423d8ac051610cec868c57e05 {"aliquot_tag": "ALQ_4cddbb71", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.miRNA-Seq.T.hg38 C3L-02542 GBM miRNA-Seq tumor CPT0161730009 9c2b85a6-9e7c-4a2a-93a7-7e2207c19003_mirnaseq_gdc_realn.bam 164518566 BAM harmonized CPTAC3 7da64cfa-f54f-4ab1-bf75-d4d376161038 d8f14a145ffc444c6178273aab45316d {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.RNA-Seq.chimeric.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.chimeric.gdc_realn.bam 33593623 BAM chimeric harmonized CPTAC3 2747e76b-112b-4f9d-b8cb-d32740a762a9 50c59173ad25e8a5849bbf075ba84471 {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.RNA-Seq.genomic.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.genomic.gdc_realn.bam 8230141629 BAM genomic harmonized CPTAC3 89bebecd-419a-4271-ae41-54ef4fbe97a5 e7b3f0fd57fb4c41e6b0a4c71b7a98bf {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.RNA-Seq.S16_L004_R1.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3905074445 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 148dde8b-7f53-4016-9aef-da06c36753a1 cee2aa8153e6f000433593a0f9c2cbe2 {"aliquot_tag": "ALQ_4cddbb71", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.RNA-Seq.S16_L004_R2.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 4239373564 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 d6009fd4-a604-4924-a56b-4894e2db69d1 91080ccdbbbd5a81127f59bf5d62b43e {"aliquot_tag": "ALQ_4cddbb71", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.RNA-Seq.transcriptome.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.transcriptome.gdc_realn.bam 9714230638 BAM transcriptome harmonized CPTAC3 1143e1d8-906a-4bdf-a2ca-16c1fd9dc43d b333832bb23aae8e0bb571f8d9c2820a {"aliquot_tag": "ALQ_4cddbb71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.WGS.N C3L-02542 GBM WGS blood_normal CPT0162540002 CPT0162540002.WholeGenome.RP-1303.bam 53592597788 BAM submitted_aligned CPTAC3 e24da890-be79-4367-acf3-4460e864ecfe 9ba2e21d21435d08d9a8fb31d6be97c2 {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02542.WGS.N.hg38 C3L-02542 GBM WGS blood_normal CPT0162540002 daa74a11-fa31-4edd-9735-67188296ef8a_wgs_gdc_realn.bam 77449398479 BAM harmonized CPTAC3 b5daa535-65cf-4f16-9101-9694dbe04250 d3a3fec64e3eadbb69fac42d81fe890a {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02542.WGS.T C3L-02542 GBM WGS tumor CPT0161730006 CPT0161730006.WholeGenome.RP-1303.bam 65997826276 BAM submitted_aligned CPTAC3 ea21c3cd-3461-4a36-81ec-c124016a85ac 4627f604da99851a981be679153abfe6 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.WGS.T.hg38 C3L-02542 GBM WGS tumor CPT0161730006 ebd8c827-69e4-4261-a40b-05acc7a4ae5f_wgs_gdc_realn.bam 96691082498 BAM harmonized CPTAC3 25c37631-c529-48a3-936d-cc1d4e9d507e 65eebde9bc308f90b2c67409ea8dee05 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.WXS.N C3L-02542 GBM WXS blood_normal CPT0162540002 CPT0162540002.WholeExome.RP-1303.bam 37304589615 BAM submitted_aligned CPTAC3 8eff7af2-6b0f-4f30-b44b-30184c86416f a7f2496e04d078635cb40e887a4ee736 {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02542.WXS.N.hg38 C3L-02542 GBM WXS blood_normal CPT0162540002 daa74a11-fa31-4edd-9735-67188296ef8a_wxs_gdc_realn.bam 50763443826 BAM harmonized CPTAC3 04eb406b-04cb-4ba0-8f2b-1206bc574cb6 671516e886c0eed2da03544e916736da {"aliquot_tag": "ALQ_150f057f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02542.WXS.T C3L-02542 GBM WXS tumor CPT0161730006 CPT0161730006.WholeExome.RP-1303.bam 27924046819 BAM submitted_aligned CPTAC3 8bb5089a-a9b5-4d53-912d-e45b9e2d11c7 255902f994a29bd4cf757fecd7f4f06f {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02542.WXS.T.hg38 C3L-02542 GBM WXS tumor CPT0161730006 ebd8c827-69e4-4261-a40b-05acc7a4ae5f_wxs_gdc_realn.bam 37545151388 BAM harmonized CPTAC3 ad6c74e3-a50c-42b1-b942-fee0feee169e 91a08d84cf783d9eef85f78368739734 {"aliquot_tag": "ALQ_dc62a6e0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.MethArray.Green.A C3L-02544 CCRCC Methylation_Array tissue_normal CPT0113150006 204930630084_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b0bcd522-4b5c-4428-ae2e-194f64b8a757 4882545521b2d9b359c58659e801eaa1 {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.MethArray.Green.T C3L-02544 CCRCC Methylation_Array tumor CPT0113120009 203219650174_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f792ca8d-2161-4ca9-8575-a9c2937dd0ea 811c566b8892445f5e1a361005e1c4c3 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.MethArray.Red.A C3L-02544 CCRCC Methylation_Array tissue_normal CPT0113150006 204930630084_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 aac0893a-186f-443a-8e6c-f40a4aa6084c 9224048d24c3d417bd55627a3076e7bc {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.MethArray.Red.T C3L-02544 CCRCC Methylation_Array tumor CPT0113120009 203219650174_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5754eb08-40db-4c4e-8534-fd0e760fecec 1e6f11578eef0afc28379e791482ad49 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.miRNA-Seq.A.hg38 C3L-02544 CCRCC miRNA-Seq tissue_normal CPT0113150009 3c4d6334-524f-4863-881b-bbd42e5140d6_mirnaseq_gdc_realn.bam 174696658 BAM harmonized CPTAC3 1b8a9bb4-7979-4655-90e3-799bcf773d4b 051d288942a137cac0685ab7206b2171 {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.miRNA-Seq.S28_L003_R1.T C3L-02544 CCRCC miRNA-Seq tumor CPT0113120006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAAAAG_S28_L003_R1_001.unaln.bam 154198619 BAM S28_L003_R1 submitted_unaligned CPTAC3 821962f3-dd63-4d1d-bdb4-b8805201e92f 3efc8db7bfefd24e85ca6889bfd36aea {"aliquot_tag": "ALQ_aa01747d", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.miRNA-Seq.S5_L002_R1.A C3L-02544 CCRCC miRNA-Seq tissue_normal CPT0113150009 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L002_R1_001.unaln.bam 158671388 BAM S5_L002_R1 submitted_unaligned CPTAC3 54399c1c-3057-4bf2-8fae-26cc77af86cd dea47cee06a1eba611fef18bb8c9026a {"aliquot_tag": "ALQ_889eb5fc", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.miRNA-Seq.T.hg38 C3L-02544 CCRCC miRNA-Seq tumor CPT0113120006 f912281d-1692-4ae6-914a-c86e7332944f_mirnaseq_gdc_realn.bam 166170315 BAM harmonized CPTAC3 30567aee-2dae-4751-8db3-99324fac8bb9 2315cfbdd5210614afc2ba07fb3c40f9 {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.RNA-Seq.chimeric.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.chimeric.gdc_realn.bam 211404207 BAM chimeric harmonized CPTAC3 4576af93-6fae-4dac-939b-a94f75bef9fe 5338fa0517484bdba87743e32cd34fdc {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.RNA-Seq.chimeric.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.chimeric.gdc_realn.bam 24325628 BAM chimeric harmonized CPTAC3 ae14112c-d2b7-4c54-93a5-e4e8f4c22781 b135cd72189bdafae8e307f30f20b967 {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.RNA-Seq.genomic.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.genomic.gdc_realn.bam 9023126561 BAM genomic harmonized CPTAC3 6df8f6df-a38c-4b05-990e-e479a733e375 f71c0e284a9794482ee35c94715e5900 {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.RNA-Seq.genomic.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.genomic.gdc_realn.bam 7696440234 BAM genomic harmonized CPTAC3 218fd745-9368-43fb-881e-51174a944644 ffa0b495046572bd3cf312045a7e3c4b {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.RNA-Seq.S12_L003_R1.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R1_001.fastq.gz 3997638933 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 1c7eb3e8-82ba-4343-a042-072fcc3794ff d48f2db97e8b9cfce9e2028bcccf1c1b {"aliquot_tag": "ALQ_889eb5fc", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.RNA-Seq.S12_L003_R2.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R2_001.fastq.gz 4220000969 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 f526c9ce-0d0f-4a65-869d-2706062c141e d460432fcdc1c0e5f4bda865a4cf5a9a {"aliquot_tag": "ALQ_889eb5fc", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.RNA-Seq.S16_L004_R1.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3471671038 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 d4cfc0a2-2492-41cb-9568-a4f46275642a a058f4a2852812631312e626a131ef62 {"aliquot_tag": "ALQ_aa01747d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.RNA-Seq.S16_L004_R2.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R2_001.fastq.gz 3683894349 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 22f1da09-4dcf-4b82-aa88-5fc6b17d7fde 7a43c0de89eea5d618e9b92ab3f24a95 {"aliquot_tag": "ALQ_aa01747d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.RNA-Seq.transcriptome.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.transcriptome.gdc_realn.bam 9464863980 BAM transcriptome harmonized CPTAC3 321c73ba-83aa-481a-adb1-5d7da5801c35 02095f73dec09a2bc20fe699dbcbb43a {"aliquot_tag": "ALQ_889eb5fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.RNA-Seq.transcriptome.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.transcriptome.gdc_realn.bam 10240934861 BAM transcriptome harmonized CPTAC3 a6ddef06-eada-4b90-abc4-f734fd14a6ad 549e6678f427d18bdbc816909d0c8ae4 {"aliquot_tag": "ALQ_aa01747d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.WGS.A C3L-02544 CCRCC WGS tissue_normal CPT0113150006 CPT0113150006.WholeGenome.RP-1303.bam 55709517458 BAM submitted_aligned CPTAC3 cb8ceb2d-08cb-489d-823d-d0257a8f0e28 38799e675e55b1f590e198eba92501db {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.WGS.A.hg38 C3L-02544 CCRCC WGS tissue_normal CPT0113150006 835b94a2-fb69-44b9-b331-3485c383fd0d_wgs_gdc_realn.bam 82717616680 BAM harmonized CPTAC3 f6cace19-1b12-4003-8156-5ea5413327dd da8ba87ff0482bc956fcde48dad67826 {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.WGS.N C3L-02544 CCRCC WGS blood_normal CPT0115240002 CPT0115240002.WholeGenome.RP-1303.bam 57986596787 BAM submitted_aligned CPTAC3 378405fc-dd94-491d-a1a6-70a5299bc679 f3d19a78bf2259a4eeabbc58220dfff2 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02544.WGS.N.hg38 C3L-02544 CCRCC WGS blood_normal CPT0115240002 1430bf9c-586e-4959-a4d9-f5046d72e341_wgs_gdc_realn.bam 83173406666 BAM harmonized CPTAC3 47d5da90-42fe-416f-8d5a-ece103e761f0 3e534b1d2666e87c9a13b21c6075f059 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02544.WGS.T C3L-02544 CCRCC WGS tumor CPT0113120009 CPT0113120009.WholeGenome.RP-1303.bam 57063079595 BAM submitted_aligned CPTAC3 be9d2212-4bff-48c4-98df-c653e5a40475 c4ce4ad9b62aefbb3d5cd6b9c4b9edbd {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.WGS.T.hg38 C3L-02544 CCRCC WGS tumor CPT0113120009 2117b6c5-8d1c-4d2d-82d9-84ebc43d3642_wgs_gdc_realn.bam 82329901819 BAM harmonized CPTAC3 47a7c1ae-80fb-45fe-a36b-51916e2c7d67 198c499375aaa93b9bc12228f11c999e {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.WXS.A C3L-02544 CCRCC WXS tissue_normal CPT0113150006 CPT0113150006.WholeExome.RP-1303.bam 25797560904 BAM submitted_aligned CPTAC3 d70c4534-e20d-45bb-b9f9-f1578175d1cb 3a11f701c18f6ede5f11506f41ca2dd6 {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.WXS.A.hg38 C3L-02544 CCRCC WXS tissue_normal CPT0113150006 835b94a2-fb69-44b9-b331-3485c383fd0d_wxs_gdc_realn.bam 35779928831 BAM harmonized CPTAC3 bb7cf8f1-9d37-4ed8-9990-c46806df39fc 55ccb7116ab5decb3aa870d61d17607d {"aliquot_tag": "ALQ_1821a86d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02544.WXS.N C3L-02544 CCRCC WXS blood_normal CPT0115240002 CPT0115240002.WholeExome.RP-1303.bam 22818565189 BAM submitted_aligned CPTAC3 76be02a0-0e38-4b67-b628-d0db910f0209 a5e7a3c00ef44dc41f5febb6bec9aad7 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02544.WXS.N.hg38 C3L-02544 CCRCC WXS blood_normal CPT0115240002 1430bf9c-586e-4959-a4d9-f5046d72e341_wxs_gdc_realn.bam 31983572540 BAM harmonized CPTAC3 0362b27e-cc00-4ef6-96db-54cbbdee270f d8f4ce432e32e3d0a2b28d9d8e3a6633 {"aliquot_tag": "ALQ_c7680250", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02544.WXS.T C3L-02544 CCRCC WXS tumor CPT0113120009 CPT0113120009.WholeExome.RP-1303.bam 25532004294 BAM submitted_aligned CPTAC3 5f63dc44-98a2-41c9-8a0b-2b32c43a4283 6626cdf309cd1fb5b0f77dbca84a2f15 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02544.WXS.T.hg38 C3L-02544 CCRCC WXS tumor CPT0113120009 2117b6c5-8d1c-4d2d-82d9-84ebc43d3642_wxs_gdc_realn.bam 35403318118 BAM harmonized CPTAC3 c74beb83-14ad-4e82-ad82-f1dc5736f37f fef1f6fb6f2b2bfc2193419bd75a0567 {"aliquot_tag": "ALQ_3abe69ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02545.MethArray.Green.T C3L-02545 UCEC Methylation_Array tumor CPT0113060009 203271750010_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 9eb7c0af-0220-4c35-842d-0c76acf99e56 8ed106103cabd9b3ca7db2c5123ee663 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.MethArray.Red.T C3L-02545 UCEC Methylation_Array tumor CPT0113060009 203271750010_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 5f62c8fd-c2b5-4878-b492-d09c2181a347 9e72f19b70bab172b4ffade2a0a87d78 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.miRNA-Seq.S27_L003_R1.T C3L-02545 UCEC miRNA-Seq tumor CPT0113060006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATTCCT_S27_L003_R1_001.unaln.bam 240038644 BAM S27_L003_R1 submitted_unaligned CPTAC3 530131bc-d008-4cc6-b6bd-ec22db3eed54 865e07609d95ba1ca3405f1d51565be3 {"aliquot_tag": "ALQ_94dd0118", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.miRNA-Seq.T.hg38 C3L-02545 UCEC miRNA-Seq tumor CPT0113060006 fb628e9b-a0cd-4a65-8f0d-e41a04f84b9e_mirnaseq_gdc_realn.bam 265164087 BAM harmonized CPTAC3 3c2ae94e-4672-4321-b641-cc7a1930d0dd 475663eb832057bb21b641a117f851d8 {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.chimeric.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.chimeric.gdc_realn.bam 29960610 BAM chimeric harmonized CPTAC3 9382181c-923e-4ee5-a79b-9b983d292326 38285b33357be15ac063fb11245a39ba {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.chimeric.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.chimeric.gdc_realn.bam 212842259 BAM chimeric harmonized CPTAC3 918454e4-7af2-4796-9f23-c882685ffb8f 5579e33894783e1e93e985b6c6e6981c {"aliquot_tag": "ALQ_5365fcf1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.genomic.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.genomic.gdc_realn.bam 8636012362 BAM genomic harmonized CPTAC3 7f20a0ec-73a2-4684-ae71-65f2cffef3d1 fe35b540ae502e9d53a6c1432301efd6 {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.genomic.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.genomic.gdc_realn.bam 10813974328 BAM genomic harmonized CPTAC3 b8f161ad-a712-40b9-8081-70110d6c2bba 748bfc5333ff9e59e10188c8e4ac97b3 {"aliquot_tag": "ALQ_5365fcf1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.S13_L004_R1.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3948336685 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 bcef598c-348e-4e73-9f94-e9c932caf978 20a0a9e5e366dd9f4c04e75644f20d08 {"aliquot_tag": "ALQ_94dd0118", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.S13_L004_R2.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 4317022674 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 995d0b42-9e1a-403f-996d-6926d76a2ea0 eaf65a74a94b28a000c13977e99b68fe {"aliquot_tag": "ALQ_94dd0118", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.S13_R1.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R1_001.fastq.gz 6376594171 FASTQ S13_R1 submitted_unaligned CPTAC3 07341a0d-32ac-4857-8c04-810eddefc830 09acff0e5ee17f20d6b6c4685e928509 {"aliquot_tag": "ALQ_5365fcf1", "sample": "S13", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.S13_R2.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R2_001.fastq.gz 6623475324 FASTQ S13_R2 submitted_unaligned CPTAC3 80a0e685-3dc0-431f-9949-325fbe5ee7b8 c854afa634a1f308da7dc993391310c0 {"aliquot_tag": "ALQ_5365fcf1", "sample": "S13", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.transcriptome.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.transcriptome.gdc_realn.bam 10888004700 BAM transcriptome harmonized CPTAC3 a2ea2351-324a-4b1a-a9d5-fc4ddabdf612 d2451e839c28af6905d369cee2e1f164 {"aliquot_tag": "ALQ_94dd0118", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.RNA-Seq.transcriptome.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.transcriptome.gdc_realn.bam 6586865901 BAM transcriptome harmonized CPTAC3 a358d36b-eb94-4046-818f-7b2de91c1540 adc171437a5314cc8f2b0c3a316671cd {"aliquot_tag": "ALQ_5365fcf1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.WGS.N C3L-02545 UCEC WGS blood_normal CPT0115230002 CPT0115230002.WholeGenome.RP-1303.bam 60063306742 BAM submitted_aligned CPTAC3 36854f1c-ba3a-4d33-bd5e-fb6dd867c8d6 63da0d118f289e3c04dfbb6b17c5819b {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02545.WGS.N.hg38 C3L-02545 UCEC WGS blood_normal CPT0115230002 c318b321-0a84-424a-897e-68cbd9f5b838_wgs_gdc_realn.bam 87587039901 BAM harmonized CPTAC3 e655dbd5-c57d-42f2-9c25-24194b3f118a f516f7c3cd5422ac1483abffdeea6d33 {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02545.WGS.T C3L-02545 UCEC WGS tumor CPT0113060009 CPT0113060009.WholeGenome.RP-1303.bam 64030472861 BAM submitted_aligned CPTAC3 2185efb3-f734-451c-b7b8-b7e6cd825b52 a07c12b125f939bd3cf74a7ea10f2510 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.WGS.T.hg38 C3L-02545 UCEC WGS tumor CPT0113060009 7cb30cf9-6a37-4102-b3aa-ebc9666f8900_wgs_gdc_realn.bam 92449481381 BAM harmonized CPTAC3 d1df9248-1f34-4b5e-9eba-151721970fd3 be8313b6d6e385efd1bfd4aeb70998c8 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.WXS.N C3L-02545 UCEC WXS blood_normal CPT0115230002 CPT0115230002.WholeExome.RP-1303.bam 22457857338 BAM submitted_aligned CPTAC3 f7876d55-3527-400e-8889-a7b3df71a903 433b7db9f5c382ef69f3383503f5bc66 {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02545.WXS.N.hg38 C3L-02545 UCEC WXS blood_normal CPT0115230002 c318b321-0a84-424a-897e-68cbd9f5b838_wxs_gdc_realn.bam 31300845145 BAM harmonized CPTAC3 e82606e0-2b2d-4db5-929b-e2b4b4eccc02 dbb95c99ee1326c70168e53d23e386ed {"aliquot_tag": "ALQ_7548de40", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02545.WXS.T C3L-02545 UCEC WXS tumor CPT0113060009 CPT0113060009.WholeExome.RP-1303.bam 22908412616 BAM submitted_aligned CPTAC3 e2c2d258-2c01-4309-a99b-698ddfdbdfc5 538fb197ee8f27e9c5e3986d9a1fca5e {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02545.WXS.T.hg38 C3L-02545 UCEC WXS tumor CPT0113060009 7cb30cf9-6a37-4102-b3aa-ebc9666f8900_wxs_gdc_realn.bam 30986530120 BAM harmonized CPTAC3 d8bcef8d-af0b-4d75-adcf-d7e678876aad 6159d18017ead96cd0dfad86988dda87 {"aliquot_tag": "ALQ_4621c89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02546.MethArray.Green.A C3L-02546 LSCC Methylation_Array tissue_normal CPT0112660006 203220070171_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 aed8475f-3a53-4147-b3c4-6e9e147a8704 85c5535b176eaa860de2e08a00977552 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.MethArray.Green.T C3L-02546 LSCC Methylation_Array tumor CPT0112650009 203219650211_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 4b936277-009b-4d48-b60d-713c84507cbc 0e5f5c466a08f180726a2d26f7c1487f {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.MethArray.Red.A C3L-02546 LSCC Methylation_Array tissue_normal CPT0112660006 203220070171_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 e558631b-d1e5-42f7-8d42-8f8fdf499217 1e17755aeef9a9e448628e3c3d3efbe2 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.MethArray.Red.T C3L-02546 LSCC Methylation_Array tumor CPT0112650009 203219650211_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 87a6bd28-27c6-41a9-813d-d6728a3c3271 bd9c7276b23a58c0f85c8768fbbaf99c {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.miRNA-Seq.A.hg38 C3L-02546 LSCC miRNA-Seq tissue_normal CPT0112660009 9fdbe5a3-cb45-4187-9ec3-38efd1be3bbd_mirnaseq_gdc_realn.bam 346125493 BAM harmonized CPTAC3 cdef5296-e287-4169-abcd-eacbee0f625b 96936c05397377d4bd934ad8d1b7c4cc {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.miRNA-Seq.S36_L002_R1.A C3L-02546 LSCC miRNA-Seq tissue_normal CPT0112660009 181219_UNC31-K00269_0173_BHYGJJBBXX_CGGAAT_S36_L002_R1_001.unaln.bam 313303336 BAM S36_L002_R1 submitted_unaligned CPTAC3 ffdc3fcb-b4eb-48f3-93a8-89bc7701ce70 ca6407885f711f613499ca6e172bfc82 {"aliquot_tag": "ALQ_744cf420", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.miRNA-Seq.S5_L001_R1.T C3L-02546 LSCC miRNA-Seq tumor CPT0112650006 181219_UNC31-K00269_0173_BHYGJJBBXX_ACAGTG_S5_L001_R1_001.unaln.bam 254875826 BAM S5_L001_R1 submitted_unaligned CPTAC3 c108f38d-26f8-4920-8860-62f28e29091c 25125f332564364f68cf9b02a814e3c1 {"aliquot_tag": "ALQ_a3539361", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.miRNA-Seq.T.hg38 C3L-02546 LSCC miRNA-Seq tumor CPT0112650006 f7d7ac86-012e-4ebc-b1b8-699c65f50554_mirnaseq_gdc_realn.bam 278898204 BAM harmonized CPTAC3 9c53488d-5875-46b8-a50c-205db6a92d77 8a9db2318f0c5293e994d2213869a654 {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.RNA-Seq.chimeric.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.chimeric.gdc_realn.bam 28794113 BAM chimeric harmonized CPTAC3 7f597353-1b06-4b15-bb3d-19e24948d4a9 3c1acd4eaae7a12a70cb32a5bc46ad1d {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.RNA-Seq.chimeric.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.chimeric.gdc_realn.bam 37788798 BAM chimeric harmonized CPTAC3 d2acd089-cbd6-4f07-9468-aa8e6aafc0c2 4ac7f81899cd4bfe61b364b6a8c18bd6 {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.RNA-Seq.genomic.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.genomic.gdc_realn.bam 8582230701 BAM genomic harmonized CPTAC3 a32cc404-19d5-4bb4-bfa3-155c8fd9d5a6 6ffded1d6b6376e28b7c23a05ce01298 {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.RNA-Seq.genomic.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.genomic.gdc_realn.bam 9267959037 BAM genomic harmonized CPTAC3 edb0fa2d-0171-4440-931c-ee6d449ac10e f03d686e0c95e344a7c09f8ee7808123 {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.RNA-Seq.S23_L006_R1.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3851688918 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 ea37fd16-da19-47cf-970e-010d21723214 25a3f974e773e8127846b0ac0b514392 {"aliquot_tag": "ALQ_744cf420", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.RNA-Seq.S23_L006_R1.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R1_001.fastq.gz 4327893784 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 afb20289-623e-41ba-8730-b3414c9e6f1f 81842ed59b1307992a4c6f9d49b9b3f6 {"aliquot_tag": "ALQ_a3539361", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.RNA-Seq.S23_L006_R2.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 3995060515 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 d7c32ece-35aa-4c16-850a-5e00b660fb62 556fa600b8718552a8c45cc8438da364 {"aliquot_tag": "ALQ_744cf420", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.RNA-Seq.S23_L006_R2.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4723029633 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 9b8abc9d-9c19-4032-a25c-31b682b98864 3e9c2a1142bf236b0412e2b3617830a7 {"aliquot_tag": "ALQ_a3539361", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.RNA-Seq.transcriptome.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.transcriptome.gdc_realn.bam 9909257362 BAM transcriptome harmonized CPTAC3 3c5b3f0a-4dd4-4afe-b9e5-12d15a135bef 346be7831fc2f276b57a621a1dfd9ee6 {"aliquot_tag": "ALQ_744cf420", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.RNA-Seq.transcriptome.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.transcriptome.gdc_realn.bam 12675581366 BAM transcriptome harmonized CPTAC3 5e5702d4-8393-45a3-83e2-d3c368b3a136 2c661eebaa2396076a3fe3b134067b0c {"aliquot_tag": "ALQ_a3539361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.WGS.A C3L-02546 LSCC WGS tissue_normal CPT0112660006 CPT0112660006.WholeGenome.RP-1303.bam 53230923345 BAM submitted_aligned CPTAC3 e557d1e2-61e7-4b81-a0ec-7434ace84453 28596e9a582aef122f4d43e2b5ea69f1 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.WGS.A.hg38 C3L-02546 LSCC WGS tissue_normal CPT0112660006 549d8dfc-90ff-4c2c-9306-c4b24ee1c81d_wgs_gdc_realn.bam 77462064099 BAM harmonized CPTAC3 d611f811-594f-47a1-93d8-8dcec08f3630 b19a3ddd6ee338661fa82265f54bea1b {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.WGS.N C3L-02546 LSCC WGS blood_normal CPT0115180002 CPT0115180002.WholeGenome.RP-1303.bam 61871477324 BAM submitted_aligned CPTAC3 8c4958d2-fb24-4ac8-8dc2-cf92bfadc063 780078399703a32b55e598c40318d1de {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02546.WGS.N.hg38 C3L-02546 LSCC WGS blood_normal CPT0115180002 800c8094-c41a-48ff-8af9-955d58e3db66_wgs_gdc_realn.bam 89632146514 BAM harmonized CPTAC3 2ed949aa-4ed0-41f6-8bee-ad3a4ba74d83 11b134c16639cb1757a090f79257a273 {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02546.WGS.T C3L-02546 LSCC WGS tumor CPT0112650009 CPT0112650009.WholeGenome.RP-1303.bam 53073233302 BAM submitted_aligned CPTAC3 182bf23d-fa6a-49f6-bb73-37524215e9f9 e5283eca69e104de4305c9f7c0349f96 {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.WGS.T.hg38 C3L-02546 LSCC WGS tumor CPT0112650009 4df9fe66-df3a-4c95-9e8a-99ff3c3ef043_wgs_gdc_realn.bam 77041069256 BAM harmonized CPTAC3 9095ed6f-aeb6-402b-82d1-a9c79f9a4ee7 7c2f1ce1a0c169b9f5540ecd381a322e {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.WXS.A C3L-02546 LSCC WXS tissue_normal CPT0112660006 CPT0112660006.WholeExome.RP-1303.bam 22983543524 BAM submitted_aligned CPTAC3 3e03a0e6-0159-4a3e-872e-ea4579d67f59 005c14ed35fdb835bf6bcddd68140bfb {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.WXS.A.hg38 C3L-02546 LSCC WXS tissue_normal CPT0112660006 549d8dfc-90ff-4c2c-9306-c4b24ee1c81d_wxs_gdc_realn.bam 31156833841 BAM harmonized CPTAC3 21e416cb-55c7-4085-b3a1-674f7f349e61 adba699c35d7e39f32f2bddf72b49ec6 {"aliquot_tag": "ALQ_e4f3e9b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02546.WXS.N C3L-02546 LSCC WXS blood_normal CPT0115180002 CPT0115180002.WholeExome.RP-1303.bam 27967346113 BAM submitted_aligned CPTAC3 c98a9bc4-9e4d-42e0-85f7-824dca616f38 1313a7f7c37d2d8dfc6561edfdd3b527 {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02546.WXS.N.hg38 C3L-02546 LSCC WXS blood_normal CPT0115180002 800c8094-c41a-48ff-8af9-955d58e3db66_wxs_gdc_realn.bam 38253659834 BAM harmonized CPTAC3 0719d8d5-91a8-45b2-8bd3-6417ae7b6797 06c35043f07e9d12763e9a8a1f686545 {"aliquot_tag": "ALQ_840c9dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02546.WXS.T C3L-02546 LSCC WXS tumor CPT0112650009 CPT0112650009.WholeExome.RP-1303.bam 26708695938 BAM submitted_aligned CPTAC3 6fc29096-99aa-497e-aabe-33bd01fbbe20 70233b0b008df5df3846d72898358bd1 {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02546.WXS.T.hg38 C3L-02546 LSCC WXS tumor CPT0112650009 4df9fe66-df3a-4c95-9e8a-99ff3c3ef043_wxs_gdc_realn.bam 37307837135 BAM harmonized CPTAC3 65166d23-2a24-4924-b728-c09e4279aa41 e60fd6f42140962bd13d02cbe9c5136f {"aliquot_tag": "ALQ_33ec8ef0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.MethArray.Green.A C3L-02549 LUAD Methylation_Array tissue_normal CPT0113220009 203027380028_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 1206d7ca-08fd-4f5e-a05f-f59fae9ca54b 73f03101e41c82f86ecc24d02d986b0b {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.MethArray.Green.T C3L-02549 LUAD Methylation_Array tumor CPT0113210009 202234380061_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 99ea2c91-553b-4a23-8fa6-ce9b7ead37c1 0f055deab9b6e00e97d72568f7aafa20 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.MethArray.Red.A C3L-02549 LUAD Methylation_Array tissue_normal CPT0113220009 203027380028_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 479e9ccd-0248-4047-bd52-57709013a024 8e2b4490ead3d64730202641de960521 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.MethArray.Red.T C3L-02549 LUAD Methylation_Array tumor CPT0113210009 202234380061_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 b8d081de-f927-47db-9ec6-90a6c22d8fc5 e3afb635c15bb29c7406ae1d2438bfb3 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.miRNA-Seq.A.hg38 C3L-02549 LUAD miRNA-Seq tissue_normal CPT0113220006 46a975c6-189c-4f8d-857a-59b6faa9202d_mirnaseq_gdc_realn.bam 295987581 BAM harmonized CPTAC3 827a7897-d593-4bc3-8931-f1b13956de57 e9c24decd500574872cdf902b9bfe451 {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.miRNA-Seq.S20_L007_R1.A C3L-02549 LUAD miRNA-Seq tissue_normal CPT0113220006 181108_UNC31-K00269_0162_AH255GBBXY_TATAAT_S20_L007_R1_001.unaln.bam 274582437 BAM S20_L007_R1 submitted_unaligned CPTAC3 9b310a16-9170-4d9a-8d48-70388307fdb7 ec8be03491a21f0f9411f061817fbdfb {"aliquot_tag": "ALQ_2c9506d3", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.miRNA-Seq.S37_L002_R1.T C3L-02549 LUAD miRNA-Seq tumor CPT0113210006 181113_UNC31-K00269_0164_AH23NNBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 196286023 BAM S37_L002_R1 submitted_unaligned CPTAC3 8a724441-d129-45e4-bce4-28740919428e cd7a750ce3becbfef9f3c0e1eed43df0 {"aliquot_tag": "ALQ_6b357c03", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.miRNA-Seq.T.hg38 C3L-02549 LUAD miRNA-Seq tumor CPT0113210006 be849fd7-d6e1-4b3d-9705-8d31cde89006_mirnaseq_gdc_realn.bam 213985898 BAM harmonized CPTAC3 a1319221-6c6c-4469-a95a-194ad134e4e8 d2bd05e39e307cd968649018835cb429 {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.RNA-Seq.chimeric.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.chimeric.gdc_realn.bam 64061927 BAM chimeric harmonized CPTAC3 c379f5d2-ddfd-4b64-93d5-aac7f297aace f78a03420b792c3ef549f17b711e614b {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.RNA-Seq.chimeric.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.chimeric.gdc_realn.bam 61938579 BAM chimeric harmonized CPTAC3 76d99934-b3c2-4d88-96a7-268b0224a617 9c2bf274b29e975f9fa6efbac2db1e6f {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.RNA-Seq.genomic.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.genomic.gdc_realn.bam 8325086097 BAM genomic harmonized CPTAC3 647d94d2-adc9-4d85-a60d-75c4c71006cd 96ac394d40f38adac48f7ca63dfaaa7a {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.RNA-Seq.genomic.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.genomic.gdc_realn.bam 8302019673 BAM genomic harmonized CPTAC3 3e5dee2e-ec64-4db7-b892-5d6413f9b13b 78f45e7a9c816188e38cd5221de01460 {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.RNA-Seq.S15_L004_R1.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R1_001.fastq.gz 3712777353 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 ad1ac161-791e-426b-abcb-d564884c0d86 dca819c9f568e5371c35a7d4689683be {"aliquot_tag": "ALQ_6b357c03", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.RNA-Seq.S15_L004_R2.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R2_001.fastq.gz 4231846917 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 0267044c-e819-411f-8ff3-698a68b20d3a 0d8aa07a64fe0213b37abba8f861a7c2 {"aliquot_tag": "ALQ_6b357c03", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.RNA-Seq.S7_L002_R1.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R1_001.fastq.gz 4048299200 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 82bbca47-74e7-4528-8592-a59273cbc3bc 25334d863410b560f2bd5b72bbad009e {"aliquot_tag": "ALQ_2c9506d3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.RNA-Seq.S7_L002_R2.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R2_001.fastq.gz 4378753388 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 a7de7866-6449-46b9-8591-faa0c00950cd cbc42bb8cdb306196157a940f44a9a7f {"aliquot_tag": "ALQ_2c9506d3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.RNA-Seq.transcriptome.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.transcriptome.gdc_realn.bam 10385876066 BAM transcriptome harmonized CPTAC3 2a5207fa-9a45-4a59-9a41-59e525717a1c 8beec219e4a6528f0d0d34e8ee0f9fa2 {"aliquot_tag": "ALQ_2c9506d3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.RNA-Seq.transcriptome.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.transcriptome.gdc_realn.bam 11275396717 BAM transcriptome harmonized CPTAC3 e5949f5b-a85b-4684-b20b-56bfe0502736 dc81cae6801ecdb30e0c5595dad2d296 {"aliquot_tag": "ALQ_6b357c03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.WGS.A C3L-02549 LUAD WGS tissue_normal CPT0113220009 CPT0113220009.WholeGenome.RP-1303.bam 56469375027 BAM submitted_aligned CPTAC3 51a51128-7806-47c9-a968-3d8599ccf050 182789f8ff8dad136baf5596f317e1b2 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.WGS.A.hg38 C3L-02549 LUAD WGS tissue_normal CPT0113220009 d7dd9bcd-738a-4c20-8a7f-26ab1b436806_wgs_gdc_realn.bam 82295251947 BAM harmonized CPTAC3 e2fb6f3a-ddea-4285-8092-6355faa35b3d 90c0bf04822da9b7adac72d72f1f27c5 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.WGS.N C3L-02549 LUAD WGS blood_normal CPT0115250002 CPT0115250002.WholeGenome.RP-1303.bam 61417301387 BAM submitted_aligned CPTAC3 dfa069c3-7fea-4fb3-834b-efdd22993402 d8c7ddce80678ac000fa2e51001b9b7b {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02549.WGS.N.hg38 C3L-02549 LUAD WGS blood_normal CPT0115250002 3993fcff-1eb7-4269-b65d-17692a77b538_wgs_gdc_realn.bam 88723889621 BAM harmonized CPTAC3 56355cf3-e713-4f84-8341-34a831669dce 8f4507e6242e8e3a3c5332f74f97e627 {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02549.WGS.T C3L-02549 LUAD WGS tumor CPT0113210009 CPT0113210009.WholeGenome.RP-1303.bam 65125394788 BAM submitted_aligned CPTAC3 3278a3a8-c2d8-40c1-9f9f-d493ebcdd7c8 d54def28023a069675f95075b94774ca {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.WGS.T.hg38 C3L-02549 LUAD WGS tumor CPT0113210009 277a56c0-5e19-4292-951f-6b10ac741447_wgs_gdc_realn.bam 96152277766 BAM harmonized CPTAC3 c7b01188-7297-430d-bf6e-03af64176550 4933132a0ab68e6e24c287a834154e20 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.WXS.A C3L-02549 LUAD WXS tissue_normal CPT0113220009 CPT0113220009.WholeExome.RP-1303.bam 37851517018 BAM submitted_aligned CPTAC3 32b5ff90-7f02-4719-9e58-27d9fd4144c9 e28a14f2c2ee3ee341d3530550ead5a7 {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.WXS.A.hg38 C3L-02549 LUAD WXS tissue_normal CPT0113220009 d7dd9bcd-738a-4c20-8a7f-26ab1b436806_wxs_gdc_realn.bam 52087894702 BAM harmonized CPTAC3 00eb892c-da5f-4e69-8c0b-6e2c1502f62c 209163375b1612edad4cbd5dab97182a {"aliquot_tag": "ALQ_bc2a1b42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02549.WXS.N C3L-02549 LUAD WXS blood_normal CPT0115250002 CPT0115250002.WholeExome.RP-1303.bam 24423382580 BAM submitted_aligned CPTAC3 bd38144f-29e0-416b-8ce0-0153abe09838 eb0e3b43f401facd9fb0f1e799eaffaa {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02549.WXS.N.hg38 C3L-02549 LUAD WXS blood_normal CPT0115250002 3993fcff-1eb7-4269-b65d-17692a77b538_wxs_gdc_realn.bam 33794028135 BAM harmonized CPTAC3 ff823df2-eaf4-4f3d-ab59-6036bc57a13a 1e3c40505c09478d5b361aa975062110 {"aliquot_tag": "ALQ_fa082be0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02549.WXS.T C3L-02549 LUAD WXS tumor CPT0113210009 CPT0113210009.WholeExome.RP-1303.bam 29412612595 BAM submitted_aligned CPTAC3 b39832da-748c-4b25-8266-d26841564656 15d214ebe7b68a4a46cfc735c120629e {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02549.WXS.T.hg38 C3L-02549 LUAD WXS tumor CPT0113210009 277a56c0-5e19-4292-951f-6b10ac741447_wxs_gdc_realn.bam 40890473336 BAM harmonized CPTAC3 37089f84-3ea7-46b6-9bd3-bc0246e31969 bda4e0d234b59928c2a02c19b83e8e56 {"aliquot_tag": "ALQ_fb8a6192", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.MethArray.Green.A C3L-02551 CCRCC Methylation_Array tissue_normal CPT0161540006 204930640108_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 86e69bd3-7da4-4235-a7b9-1fba4745cd33 3b722b058fa998d6e98d7b6c146af433 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.MethArray.Green.T C3L-02551 CCRCC Methylation_Array tumor CPT0161510006 203219650221_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 028453b2-a0ad-4a9f-bbc8-4f5838790ffb 28352af3577a1787a3e13ef68fd5c9af {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.MethArray.Red.A C3L-02551 CCRCC Methylation_Array tissue_normal CPT0161540006 204930640108_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 5fb842cf-00ed-491c-938d-8254925731ac 2a4c7204d47d10e5838e6befa2e2e809 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.MethArray.Red.T C3L-02551 CCRCC Methylation_Array tumor CPT0161510006 203219650221_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 ffddadfb-3c50-4229-901b-4fb9e340674e a76a0313d963a4ec09bab1a9c28f2d60 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.miRNA-Seq.A.hg38 C3L-02551 CCRCC miRNA-Seq tissue_normal CPT0161540009 2c6a6d75-da08-48d1-8da8-4e63edb8b0c7_mirnaseq_gdc_realn.bam 289511418 BAM harmonized CPTAC3 22a1c70b-22e7-4b9c-8f50-d9fb1d351dc1 d2376668d13b3b6a7bced07b41ce5baa {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.miRNA-Seq.S27_L002_R1.A C3L-02551 CCRCC miRNA-Seq tissue_normal CPT0161540009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L002_R1_001.unaln.bam 264755414 BAM S27_L002_R1 submitted_unaligned CPTAC3 5e40fa39-327b-4d59-b84f-622a11e315cb 40836e6309dd9932c835dcfd0f49757c {"aliquot_tag": "ALQ_b335c66a", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.miRNA-Seq.S31_L003_R1.T C3L-02551 CCRCC miRNA-Seq tumor CPT0161510009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L003_R1_001.unaln.bam 149020117 BAM S31_L003_R1 submitted_unaligned CPTAC3 0ad0b01b-b2d9-4702-9214-fc8e457644ae 89864c60c9e0ab7e03937383557fae5f {"aliquot_tag": "ALQ_7bd5491a", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.miRNA-Seq.T.hg38 C3L-02551 CCRCC miRNA-Seq tumor CPT0161510009 7c0e1ae8-fad8-469b-90e4-550416ffc3be_mirnaseq_gdc_realn.bam 163223991 BAM harmonized CPTAC3 72c8339d-7572-4a12-9527-215a29f56271 7d75d22b55436dac83a39a8cf05bd59a {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.RNA-Seq.chimeric.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.chimeric.gdc_realn.bam 71811535 BAM chimeric harmonized CPTAC3 8dd12b1b-997c-40e5-9cd2-539ea9018b07 2c8de3a0c472920790df874b649881c9 {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.RNA-Seq.chimeric.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.chimeric.gdc_realn.bam 121740040 BAM chimeric harmonized CPTAC3 07c8f8b5-8c06-4afd-8c8f-a1861c2c0166 104e8285eb77bddf36d7236f39a689ba {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.RNA-Seq.genomic.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.genomic.gdc_realn.bam 10673736308 BAM genomic harmonized CPTAC3 f170f591-0d2e-46b9-b8cc-22bd53a7d32c 6fcc00a3eb76ff6e8b3b93d9c0954e1f {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.RNA-Seq.genomic.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.genomic.gdc_realn.bam 8665124855 BAM genomic harmonized CPTAC3 7c7e310d-1059-4248-a0b3-2762fc88e5b0 17e68df521614f5b21de80921e63c1fe {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.RNA-Seq.S16_L006_R1.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R1_001.fastq.gz 3677153793 FASTQ S16_L006_R1 submitted_unaligned CPTAC3 fb3087ed-d401-4e42-b2a1-1cbe372e5e5a 1ab23bcf92e065f135e72d57a92b29c8 {"aliquot_tag": "ALQ_7bd5491a", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.RNA-Seq.S16_L006_R2.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R2_001.fastq.gz 3897429232 FASTQ S16_L006_R2 submitted_unaligned CPTAC3 29354421-b9e4-4e98-bdec-82288547acd9 1ea0f3e50cbae7fb0816fff80ea64a3b {"aliquot_tag": "ALQ_7bd5491a", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.RNA-Seq.S24_L008_R1.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R1_001.fastq.gz 4428833267 FASTQ S24_L008_R1 submitted_unaligned CPTAC3 910966f5-e33e-4593-9c02-8e8c24b9278d 53180508e96e0e9c00dbf0447628b033 {"aliquot_tag": "ALQ_b335c66a", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.RNA-Seq.S24_L008_R2.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R2_001.fastq.gz 4934089489 FASTQ S24_L008_R2 submitted_unaligned CPTAC3 d4324acb-ef41-4cc6-a5b5-c5512b8dee91 52f22706ca928b9e23ec34764d311dd3 {"aliquot_tag": "ALQ_b335c66a", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.RNA-Seq.transcriptome.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.transcriptome.gdc_realn.bam 11733222965 BAM transcriptome harmonized CPTAC3 3541513b-ee89-4b5e-9501-5968bca78a49 dd04a738ce0eb298a6f533f7ccde3885 {"aliquot_tag": "ALQ_b335c66a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.RNA-Seq.transcriptome.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.transcriptome.gdc_realn.bam 9881212406 BAM transcriptome harmonized CPTAC3 3dc12408-1c1e-4c81-af19-c29f290cb388 3eff552ac3fe9362513ef9b5f1825815 {"aliquot_tag": "ALQ_7bd5491a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.scRNA-Seq.S5_L004_R1.T C3L-02551 CCRCC scRNA-Seq tumor CPT0161510004 20220404_WUSTL_TWHG-CPT0161510004-Y1N1Z1_1Bmn1_1_TCCGTTGGAT+GCGAGAACGT_S5_L004_R1_001.fastq.gz 6168927560 FASTQ S5_L004_R1 submitted_unaligned CPTAC3 f2739b71-d78c-4c17-939d-d87ee2d90fc9 ef533b2a925c530ab56201cdb4904dd4 {"aliquot_tag": "ALQ_56435a7", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02551.scRNA-Seq.S5_L004_R2.T C3L-02551 CCRCC scRNA-Seq tumor CPT0161510004 20220404_WUSTL_TWHG-CPT0161510004-Y1N1Z1_1Bmn1_1_TCCGTTGGAT+GCGAGAACGT_S5_L004_R2_001.fastq.gz 22567672709 FASTQ S5_L004_R2 submitted_unaligned CPTAC3 28fa6680-7d30-4483-896c-87130f5be35a 398de2f32ab674281d186341c1bbef3e {"aliquot_tag": "ALQ_56435a7", "sample": "S5", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02551.WGS.A C3L-02551 CCRCC WGS tissue_normal CPT0161540006 CPT0161540006.WholeGenome.RP-1303.bam 77375941138 BAM submitted_aligned CPTAC3 0c0bacce-441c-4cfc-9b4e-f1217cf96425 c3925804412d0d30eceaf0096522ee69 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.WGS.A.hg38 C3L-02551 CCRCC WGS tissue_normal CPT0161540006 3e963853-6bb2-4a64-b030-c8072ed444c0_wgs_gdc_realn.bam 113037172321 BAM harmonized CPTAC3 3bfcb0ad-55a4-4b46-bc88-4970e01c162a 4471251e15b1cefe8ea705d7c4b1bc28 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.WGS.N C3L-02551 CCRCC WGS blood_normal CPT0162510002 CPT0162510002.WholeGenome.RP-1303.bam 56656702955 BAM submitted_aligned CPTAC3 fc2146b7-d99f-421f-a8f6-5201856a120e 14d82a2e14627cfb87bfb1ab1a255f4b {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02551.WGS.N.hg38 C3L-02551 CCRCC WGS blood_normal CPT0162510002 1fb328fe-22e7-498e-b000-3dc3d9c718fa_wgs_gdc_realn.bam 82896023601 BAM harmonized CPTAC3 c3d40404-9760-45c8-9fda-0efe44bd0513 e34c3b94e8f15fd8d212eb9cc41f4654 {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02551.WGS.T C3L-02551 CCRCC WGS tumor CPT0161510006 CPT0161510006.WholeGenome.RP-1303.bam 52769924062 BAM submitted_aligned CPTAC3 8a13c646-a19f-44fc-b20d-22d78e19beec b71aa4ec43d1340db7bfa39b073de909 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.WGS.T.hg38 C3L-02551 CCRCC WGS tumor CPT0161510006 525cb672-9543-414c-9d01-9bb1f81ae753_wgs_gdc_realn.bam 77848821261 BAM harmonized CPTAC3 eef8dd9f-3421-4a87-8334-f293485bbadd 7cb201f0348921105aed4d61ee29ccd9 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.WXS.A C3L-02551 CCRCC WXS tissue_normal CPT0161540006 CPT0161540006.WholeExome.RP-1303.bam 22844200998 BAM submitted_aligned CPTAC3 72685db9-3b0f-4a66-8f47-97310523b8f9 ba16a4a555873885a513754300d09699 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.WXS.A.hg38 C3L-02551 CCRCC WXS tissue_normal CPT0161540006 3e963853-6bb2-4a64-b030-c8072ed444c0_wxs_gdc_realn.bam 32644163112 BAM harmonized CPTAC3 e9ccff09-1f15-483b-9453-b4e3827eb004 3e1c767cf1a3c8d4356edb8c10dd3ff6 {"aliquot_tag": "ALQ_238adbfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02551.WXS.N C3L-02551 CCRCC WXS blood_normal CPT0162510002 CPT0162510002.WholeExome.RP-1303.bam 23619374148 BAM submitted_aligned CPTAC3 e4621163-5a1a-4331-aa2d-0166d9277283 e8f657a0607a360029a276095d111c05 {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02551.WXS.N.hg38 C3L-02551 CCRCC WXS blood_normal CPT0162510002 1fb328fe-22e7-498e-b000-3dc3d9c718fa_wxs_gdc_realn.bam 32977526671 BAM harmonized CPTAC3 82cc5582-c9a8-4039-80b5-c96a7ba0dd65 25a32aae69813de6e25d902bf043a40d {"aliquot_tag": "ALQ_ddef8a0f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02551.WXS.T C3L-02551 CCRCC WXS tumor CPT0161510006 CPT0161510006.WholeExome.RP-1303.bam 35374962973 BAM submitted_aligned CPTAC3 637ad2ab-f705-4b36-9e5c-3ed4c99131f2 f865acb2f2ec3ebb2c5839599813fccc {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02551.WXS.T.hg38 C3L-02551 CCRCC WXS tumor CPT0161510006 525cb672-9543-414c-9d01-9bb1f81ae753_wxs_gdc_realn.bam 48317653627 BAM harmonized CPTAC3 14626088-c896-4b8a-ba97-1fd0db30eb2e de256ce73450f6607554ec05a271fab2 {"aliquot_tag": "ALQ_eb6a548b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.MethArray.Green.A C3L-02552 LSCC Methylation_Array tissue_normal CPT0112600006 203219650202_R05C01_Grn.idat 13676218 IDAT Green NA CPTAC3 69af818a-2cb3-4a51-ac3f-b3e9bb7a26cf 8ee839b9ffab5a51a4dae8c3380b0275 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.MethArray.Green.T C3L-02552 LSCC Methylation_Array tumor CPT0112580006 203219640095_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f9d8e091-aa70-4aac-b08c-264045b0322e 94dd73689705f91a2b21705da1a6d85e {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.MethArray.Red.A C3L-02552 LSCC Methylation_Array tissue_normal CPT0112600006 203219650202_R05C01_Red.idat 13676218 IDAT Red NA CPTAC3 054c1bfe-8995-4b3f-996a-7d7bbbe7a3f6 120d8b182d58be8fe746e2918ecf3a71 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.MethArray.Red.T C3L-02552 LSCC Methylation_Array tumor CPT0112580006 203219640095_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 487489b7-3e15-4be8-96d6-1f2ace2e8ea0 16e683ae8c04ae782e1fc7df9164c5cf {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.miRNA-Seq.A.hg38 C3L-02552 LSCC miRNA-Seq tissue_normal CPT0112600009 0e0b8f33-12f0-4a3c-ab51-d63f7d2f1adc_mirnaseq_gdc_realn.bam 233633749 BAM harmonized CPTAC3 938ea39c-f026-47a7-ae05-41fea460c8e5 1c0bc011a0e93fcfebd6baf28ecb332a {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.miRNA-Seq.S11_L001_R1.T C3L-02552 LSCC miRNA-Seq tumor CPT0112580009 181219_UNC31-K00269_0173_BHYGJJBBXX_GGCTAC_S11_L001_R1_001.unaln.bam 243524827 BAM S11_L001_R1 submitted_unaligned CPTAC3 597be250-5a94-471f-930a-d4b0813eed76 695b4bb86ca1549fb9ea6491cf925172 {"aliquot_tag": "ALQ_4de838ef", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.miRNA-Seq.S35_L002_R1.A C3L-02552 LSCC miRNA-Seq tissue_normal CPT0112600009 181219_UNC31-K00269_0173_BHYGJJBBXX_CCAACA_S35_L002_R1_001.unaln.bam 208095976 BAM S35_L002_R1 submitted_unaligned CPTAC3 ccfb6a00-24fd-4df0-8091-c459daf764dc f8d5e93a942220fdb723835fced26c5e {"aliquot_tag": "ALQ_fb0c0180", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.miRNA-Seq.T.hg38 C3L-02552 LSCC miRNA-Seq tumor CPT0112580009 1190a3c0-5849-43cc-bc20-25f5d7e55c9d_mirnaseq_gdc_realn.bam 273157407 BAM harmonized CPTAC3 2f24531e-76d0-43a9-ba77-92e27e45799c f72a9b3057c68da2a146dd5c423f2094 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.RNA-Seq.chimeric.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.chimeric.gdc_realn.bam 25529752 BAM chimeric harmonized CPTAC3 ba788fdf-f2ff-4559-bb80-9da288c243f9 6d5dd16982b88121955830b96bf25893 {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.RNA-Seq.chimeric.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.chimeric.gdc_realn.bam 32668887 BAM chimeric harmonized CPTAC3 cb9ca05f-8ee1-4a59-8de8-1b97e28a1b09 06ea03ce3dc0b67f507220f17f6257f2 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.RNA-Seq.genomic.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.genomic.gdc_realn.bam 8675454058 BAM genomic harmonized CPTAC3 f0ced0d0-7b25-40f9-bade-98f9c67b985f 3b7f18acf29d297adea50338394bde5f {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.RNA-Seq.genomic.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.genomic.gdc_realn.bam 10624871745 BAM genomic harmonized CPTAC3 43fd41f1-2312-46d3-bb0b-04af4eb130bb aadfea54067c795eaed988956f808cd5 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.RNA-Seq.S20_L005_R1.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3813348378 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 c35cc88e-f3b6-408e-9e9c-f00aa6607b53 26c2a076d0866776e4ff2661d890a50a {"aliquot_tag": "ALQ_fb0c0180", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.RNA-Seq.S20_L005_R2.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3985197098 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 1564591b-36f6-4214-8c07-af3fd3eb641a 1aa9378bb8fb1d57861fe893cdb12057 {"aliquot_tag": "ALQ_fb0c0180", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.RNA-Seq.S27_L007_R1.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R1_001.fastq.gz 4477909839 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 854f3883-871e-4852-83ec-c2b27d8f37da 2cb8d838f42e25ed009b33fe3f8f0dda {"aliquot_tag": "ALQ_4de838ef", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.RNA-Seq.S27_L007_R2.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R2_001.fastq.gz 4955109631 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 85099c50-e631-4f61-8413-f75281338558 812f2faa0668f5b9ba83cdee32e63bab {"aliquot_tag": "ALQ_4de838ef", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.RNA-Seq.transcriptome.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.transcriptome.gdc_realn.bam 10593616436 BAM transcriptome harmonized CPTAC3 0c7cb40d-3985-40c4-89e3-4aa9ec0d45c3 819202ccd73adec06179469c1c3fd618 {"aliquot_tag": "ALQ_fb0c0180", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.RNA-Seq.transcriptome.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.transcriptome.gdc_realn.bam 13780411340 BAM transcriptome harmonized CPTAC3 b2ad3a40-28cf-4c80-ab47-4abc7e9b25c1 a13680da271e388b0d458966599a44a1 {"aliquot_tag": "ALQ_4de838ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.WGS.A C3L-02552 LSCC WGS tissue_normal CPT0112600006 CPT0112600006.WholeGenome.RP-1303.bam 54053928438 BAM submitted_aligned CPTAC3 87eac3b2-f9d0-466d-afca-89966e08df14 ac9091d1273eea0548a537c9684435ba {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.WGS.A.hg38 C3L-02552 LSCC WGS tissue_normal CPT0112600006 b5bc65fe-e820-49e0-b4d6-0f42c7a12b5e_wgs_gdc_realn.bam 78566617374 BAM harmonized CPTAC3 1351618d-c62e-4990-b9b4-8842d49e2c82 fa0c8ad6337def39ef2fa37c26769043 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.WGS.N C3L-02552 LSCC WGS blood_normal CPT0115170002 CPT0115170002.WholeGenome.RP-1303.bam 57308231987 BAM submitted_aligned CPTAC3 1642df92-b39c-4239-a1d4-f9bc92e5baa9 8ba5e5b9095680cf72af2fa15e4c0e3a {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02552.WGS.N.hg38 C3L-02552 LSCC WGS blood_normal CPT0115170002 ab4e3671-ff37-4ec3-8a7a-9d46b33633e3_wgs_gdc_realn.bam 82568662923 BAM harmonized CPTAC3 16c519d7-2727-4650-a5ca-09a534507d21 93d687e230d733eecba6ef9a0056441b {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02552.WGS.T C3L-02552 LSCC WGS tumor CPT0112580006 CPT0112580006.WholeGenome.RP-1303.bam 58404039485 BAM submitted_aligned CPTAC3 fabcb743-72d5-4151-b7e8-7df4d8e949b4 4d3c374ae49a09861c44916c48474acf {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.WGS.T.hg38 C3L-02552 LSCC WGS tumor CPT0112580006 6890c26c-2da6-4867-aece-58b9af97bd4d_wgs_gdc_realn.bam 84727852338 BAM harmonized CPTAC3 02d84f80-c543-4ade-9ccf-ebc449d13fa1 729f76c76aabb1fdf83c7976d1c97846 {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.WXS.A C3L-02552 LSCC WXS tissue_normal CPT0112600006 CPT0112600006.WholeExome.RP-1303.bam 22784506119 BAM submitted_aligned CPTAC3 01b6eac5-9199-4fe3-88da-6e10e532c726 ea81dd3a972462432021888e4633df7e {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.WXS.A.hg38 C3L-02552 LSCC WXS tissue_normal CPT0112600006 b5bc65fe-e820-49e0-b4d6-0f42c7a12b5e_wxs_gdc_realn.bam 30780873145 BAM harmonized CPTAC3 9f500a8b-9ee8-4e85-82de-0ef7a8ac035b 0b88d0cbbfcd1bbf81aab457376a9a08 {"aliquot_tag": "ALQ_6bb31c11", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02552.WXS.N C3L-02552 LSCC WXS blood_normal CPT0115170002 CPT0115170002.WholeExome.RP-1303.bam 21970921299 BAM submitted_aligned CPTAC3 ee43da8f-633a-4b55-8e84-95ca092abb31 f1ea17b1441b5868af12433db097d8df {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02552.WXS.N.hg38 C3L-02552 LSCC WXS blood_normal CPT0115170002 ab4e3671-ff37-4ec3-8a7a-9d46b33633e3_wxs_gdc_realn.bam 29849029135 BAM harmonized CPTAC3 cea1e94c-03a7-498c-ba3b-86b4eba52707 b761bbb427302aeba8fdd67ac7c1d77b {"aliquot_tag": "ALQ_65c0a2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02552.WXS.T C3L-02552 LSCC WXS tumor CPT0112580006 CPT0112580006.WholeExome.RP-1303.bam 23983363488 BAM submitted_aligned CPTAC3 82fd2835-57a7-4fb4-9ebf-5e5d010d7d9a 3ea1eb958029545b489597a89ed375c6 {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02552.WXS.T.hg38 C3L-02552 LSCC WXS tumor CPT0112580006 6890c26c-2da6-4867-aece-58b9af97bd4d_wxs_gdc_realn.bam 33519648270 BAM harmonized CPTAC3 fdfa0afe-c2ce-4cf7-9a74-78cebde5d447 1ca12f4870312da74da16acb780e2cff {"aliquot_tag": "ALQ_dd57257e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.MethArray.Green.T C3L-02553 CCRCC Methylation_Array tumor CPT0161790006 203219640068_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 636786a6-b8e7-4627-8f66-55ba344c0adb a613cc7be39088ce22cce759e2312dc8 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.MethArray.Red.T C3L-02553 CCRCC Methylation_Array tumor CPT0161790006 203219640068_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 0bcbcf3a-fd38-457a-826d-4fe492fdc4c2 7fb8573f51acec71d8ceee353d089ba2 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.miRNA-Seq.S32_L003_R1.T C3L-02553 CCRCC miRNA-Seq tumor CPT0161790009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L003_R1_001.unaln.bam 193130654 BAM S32_L003_R1 submitted_unaligned CPTAC3 cb488837-bef1-49e5-b542-05abe19fa38c 3b8bc29fe8f04c492f42c2f38e3bd5f2 {"aliquot_tag": "ALQ_66da3d0", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.miRNA-Seq.T.hg38 C3L-02553 CCRCC miRNA-Seq tumor CPT0161790009 481880fe-a0ba-4ea1-9dd8-d701a1dbc771_mirnaseq_gdc_realn.bam 214059322 BAM harmonized CPTAC3 9b5fa094-85c4-4e00-8b43-294fb14e3eb5 a272e94c40fa2cc64ce76c739c569232 {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.RNA-Seq.chimeric.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.chimeric.gdc_realn.bam 120191860 BAM chimeric harmonized CPTAC3 85553214-f1ce-4779-9848-09bf89c80b99 bdb9121d04cc1fbc2f7c10e4b033fe8b {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.RNA-Seq.genomic.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.genomic.gdc_realn.bam 8174395520 BAM genomic harmonized CPTAC3 b7a14d21-ff85-4d86-aa82-dc4a33fd404c 1e9b53f27d218135d2110d32fed56d66 {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.RNA-Seq.S15_L006_R1.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R1_001.fastq.gz 3840317711 FASTQ S15_L006_R1 submitted_unaligned CPTAC3 f42869fb-76c2-4126-98b5-13345c6a056e a637e79554c64e6ec41017b021c51385 {"aliquot_tag": "ALQ_66da3d0", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.RNA-Seq.S15_L006_R2.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R2_001.fastq.gz 4087460956 FASTQ S15_L006_R2 submitted_unaligned CPTAC3 123e166f-c0f7-437f-a25c-9df6da0eba4b 9468a86d30d8c5b2ddd081b8c5b11941 {"aliquot_tag": "ALQ_66da3d0", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.RNA-Seq.transcriptome.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.transcriptome.gdc_realn.bam 11298942866 BAM transcriptome harmonized CPTAC3 c3c97092-70cf-4c8f-8d64-29600b77d5a9 c8ec72154bd2955b779d28a0e5b38626 {"aliquot_tag": "ALQ_66da3d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.WGS.N C3L-02553 CCRCC WGS blood_normal CPT0162560002 CPT0162560002.WholeGenome.RP-1303.bam 70861150095 BAM submitted_aligned CPTAC3 695f95df-7a51-478b-b2d3-f8532c24cec0 1dee42692d6f103f1a1f2fc899bbca0f {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02553.WGS.N.hg38 C3L-02553 CCRCC WGS blood_normal CPT0162560002 46f72fde-bfa9-4473-b02e-2fcf6ba7e9ad_wgs_gdc_realn.bam 104396358325 BAM harmonized CPTAC3 87a421dd-8e22-4e24-8577-36ffc94a34d6 5f5be0560cad1747c82d28631adcf9cd {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02553.WGS.T C3L-02553 CCRCC WGS tumor CPT0161790006 CPT0161790006.WholeGenome.RP-1303.bam 68248904842 BAM submitted_aligned CPTAC3 0b5292ff-ae88-4716-84ce-4bf2ab755b82 0a62cf8a09dd8b8863c6f45e7ba523e0 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.WGS.T.hg38 C3L-02553 CCRCC WGS tumor CPT0161790006 23a9ef2a-8d08-481b-b9a9-5ec6080dc5a0_wgs_gdc_realn.bam 100174688675 BAM harmonized CPTAC3 ad647c91-1696-4512-849e-ceb2dcc939e5 35f62a1289bbf23a96406de7d53599f8 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.WXS.N C3L-02553 CCRCC WXS blood_normal CPT0162560002 CPT0162560002.WholeExome.RP-1303.bam 27336511093 BAM submitted_aligned CPTAC3 0e7f1cd6-3913-4823-a5b4-c1ac48a9189e d6fab0595e67d52cf2881049954f809b {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02553.WXS.N.hg38 C3L-02553 CCRCC WXS blood_normal CPT0162560002 46f72fde-bfa9-4473-b02e-2fcf6ba7e9ad_wxs_gdc_realn.bam 38479520042 BAM harmonized CPTAC3 0f9db919-f741-429b-9aa3-2eb4bfeb0eb0 01eb3d86af0fe1faa7b082d7b533016c {"aliquot_tag": "ALQ_6fcf561f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02553.WXS.T C3L-02553 CCRCC WXS tumor CPT0161790006 CPT0161790006.WholeExome.RP-1303.bam 30487428077 BAM submitted_aligned CPTAC3 2a0c0916-5957-4563-acf7-db6d5e3a64e3 8722f4037957aa34ecb2a90628eb36fe {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02553.WXS.T.hg38 C3L-02553 CCRCC WXS tumor CPT0161790006 23a9ef2a-8d08-481b-b9a9-5ec6080dc5a0_wxs_gdc_realn.bam 41749626009 BAM harmonized CPTAC3 66c7c336-431d-4d20-88e0-227e0ea72f6b 952d3ed8591b232b666158a5856e2447 {"aliquot_tag": "ALQ_96d2be41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02555.MethArray.Green.T C3L-02555 UCEC Methylation_Array tumor CPT0128370006 203220070217_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 534ea967-bbe5-4c38-b9f9-394826d36964 2bc76011a3a79f2d967fe1b96a91cd13 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.MethArray.Red.T C3L-02555 UCEC Methylation_Array tumor CPT0128370006 203220070217_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 893e59e0-23f2-4133-a480-8c34721c1fc4 7253d2b1aa4df33f7a0d2e4def4535f6 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.miRNA-Seq.S23_L004_R1.T C3L-02555 UCEC miRNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0176_AHYGLVBBXX_GAGTGG_S23_L004_R1_001.unaln.bam 223654278 BAM S23_L004_R1 submitted_unaligned CPTAC3 bc1f004f-1008-4d36-8d91-39f514305f2e 7a3d1f0e8119fac07d8ad8daf35f7674 {"aliquot_tag": "ALQ_331e148e", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.miRNA-Seq.T.hg38 C3L-02555 UCEC miRNA-Seq tumor CPT0128370009 06a76c30-395d-42a5-83df-728edc0fda05_mirnaseq_gdc_realn.bam 247777622 BAM harmonized CPTAC3 adcfc22e-0192-4b99-ad2f-fd566cd846f1 26a11975eb6f201fd2aed6fb5c4b1ec6 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.chimeric.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.chimeric.gdc_realn.bam 84608145 BAM chimeric harmonized CPTAC3 3ca42d26-c5d0-491d-9fe7-fa0b1aa86cbc 0dfb577ac191ab9cac2c3e05ddf64070 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.chimeric.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.chimeric.gdc_realn.bam 195093880 BAM chimeric harmonized CPTAC3 cf25bc9f-3a4a-4744-aefe-4f5f0f566e05 6b8d38eba1fa2f2fba90809ffb6dadb9 {"aliquot_tag": "ALQ_6e05d541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.genomic.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.genomic.gdc_realn.bam 8307365796 BAM genomic harmonized CPTAC3 4da75c88-f92b-44c8-81be-8398b4a53fc9 12eec0e1eb1ebcfd8f07b3e4f6958822 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.genomic.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.genomic.gdc_realn.bam 8502624893 BAM genomic harmonized CPTAC3 469d7a01-e650-4326-8104-3f32dd0f049a d2a34a603884b5aba6b6f26eef65ce80 {"aliquot_tag": "ALQ_6e05d541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.S19_R1.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R1_001.fastq.gz 4675218030 FASTQ S19_R1 submitted_unaligned CPTAC3 5fec198b-7e93-43a0-a011-38863cef4493 764cea8b7b496b27665d1c819ee9fc00 {"aliquot_tag": "ALQ_6e05d541", "sample": "S19", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.S19_R2.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R2_001.fastq.gz 4739616541 FASTQ S19_R2 submitted_unaligned CPTAC3 705718a5-26b1-4317-ac7e-b81672715aa7 6f4eaaf911481b5ad6b19a872309a303 {"aliquot_tag": "ALQ_6e05d541", "sample": "S19", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.S1_L001_R1.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3724233412 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 db713eb3-15ae-4a94-aeab-bdca4eeba52d 0175608820bad1141ca4985460f5cc2f {"aliquot_tag": "ALQ_331e148e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.S1_L001_R2.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 3935640920 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 69243744-6ba4-4e00-a51a-6e4189ad24c5 94f9fab35b44314363fb3ddd06606ccb {"aliquot_tag": "ALQ_331e148e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.transcriptome.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.transcriptome.gdc_realn.bam 9638455336 BAM transcriptome harmonized CPTAC3 3a39c50b-dcd7-40f9-b3a3-dd31ccb43cac aacae1ee53547a7532413f698d172556 {"aliquot_tag": "ALQ_331e148e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.RNA-Seq.transcriptome.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.transcriptome.gdc_realn.bam 3943878050 BAM transcriptome harmonized CPTAC3 a44f7df5-b5c6-4d39-bb7b-8099587a9d7b 27f41ad499de44f3af05bf0c4c9c3108 {"aliquot_tag": "ALQ_6e05d541", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.WGS.N C3L-02555 UCEC WGS blood_normal CPT0129420002 CPT0129420002.WholeGenome.RP-1303.bam 57666240904 BAM submitted_aligned CPTAC3 e2ebcbcc-ff64-4199-b35d-58971bbf9789 90ec2eb35cd64ab74a1a1b62fda3668f {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02555.WGS.N.hg38 C3L-02555 UCEC WGS blood_normal CPT0129420002 e14b2ac5-d3ba-432b-b415-9943d761bd25_wgs_gdc_realn.bam 84653929323 BAM harmonized CPTAC3 5a4876c8-413d-400b-b6f2-0d68e3a90181 c318d30cb059961c5399232f2a91a6b6 {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02555.WGS.T C3L-02555 UCEC WGS tumor CPT0128370006 CPT0128370006.WholeGenome.RP-1303.bam 55020507589 BAM submitted_aligned CPTAC3 88d22ef6-123f-490f-af6c-61ad5edbdd91 2a16b80ca7c0d6f5128900bb09939ea0 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.WGS.T.hg38 C3L-02555 UCEC WGS tumor CPT0128370006 871138fd-1695-41ca-92d1-2227be39c7b0_wgs_gdc_realn.bam 80186591055 BAM harmonized CPTAC3 b81f5623-5b7e-41d0-aae9-3cb5f8fefdc9 ed6c55c3ecf1122fbe2aba8c36efb452 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.WXS.N C3L-02555 UCEC WXS blood_normal CPT0129420002 CPT0129420002.WholeExome.RP-1303.bam 28640816600 BAM submitted_aligned CPTAC3 93556a3a-58cc-46ff-b560-8df594b1f998 2c6e265d4dc597120fc180aec699c5ae {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02555.WXS.N.hg38 C3L-02555 UCEC WXS blood_normal CPT0129420002 e14b2ac5-d3ba-432b-b415-9943d761bd25_wxs_gdc_realn.bam 40255296311 BAM harmonized CPTAC3 3b266e76-0bdc-4e2d-8d17-011f708cd741 a94b511d5184a650bae2d8722d7ea844 {"aliquot_tag": "ALQ_d75e797a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02555.WXS.T C3L-02555 UCEC WXS tumor CPT0128370006 CPT0128370006.WholeExome.RP-1303.bam 26345856128 BAM submitted_aligned CPTAC3 4e398596-fbcc-405a-8007-380ae83aa208 87b64a79ad8476173087012120a6e634 {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02555.WXS.T.hg38 C3L-02555 UCEC WXS tumor CPT0128370006 871138fd-1695-41ca-92d1-2227be39c7b0_wxs_gdc_realn.bam 36265183470 BAM harmonized CPTAC3 10cb4cbd-b69e-46d7-a305-f11f8cb44e5d db7266777688f2a7fe0ebedf178088fb {"aliquot_tag": "ALQ_a3a1091f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02556.MethArray.Green.A C3L-02556 CCRCC Methylation_Array tissue_normal CPT0161840006 204930630040_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 bcd47d31-7227-4cef-8fb2-e12444e62144 cbaade29803561be2a12ba6457b8091e {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.MethArray.Green.T C3L-02556 CCRCC Methylation_Array tumor CPT0161820011 203219650156_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f3c8b124-9914-4cc7-81a6-1cd84bc8873a 0611d87a9e8344dc8c581698e4b9fdce {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.MethArray.Red.A C3L-02556 CCRCC Methylation_Array tissue_normal CPT0161840006 204930630040_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 68309605-eb5b-4125-b443-5b4ea2192ca5 89e3a198bf43323636181538d6d27c42 {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.MethArray.Red.T C3L-02556 CCRCC Methylation_Array tumor CPT0161820011 203219650156_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 98658235-70f2-48a1-8a77-47fdd71dcc1c 6a4d9a4b64713cde7250ded053c9a48a {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.miRNA-Seq.A.hg38 C3L-02556 CCRCC miRNA-Seq tissue_normal CPT0161840009 8d33f9c5-3c14-4040-894f-62a2898a6b37_mirnaseq_gdc_realn.bam 239963425 BAM harmonized CPTAC3 6f871282-16ca-4d26-9f3f-1e728a3df0c8 9cf219a53c3dad9bfb07b2af78149900 {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.miRNA-Seq.S23_L003_R1.T C3L-02556 CCRCC miRNA-Seq tumor CPT0161820009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L003_R1_001.unaln.bam 224869141 BAM S23_L003_R1 submitted_unaligned CPTAC3 67e0b0c9-3967-4b58-85e8-f629be62fefe 3b75767c76c6b06b9739ebd81eb632f4 {"aliquot_tag": "ALQ_80eb2014", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.miRNA-Seq.S28_L003_R1.A C3L-02556 CCRCC miRNA-Seq tissue_normal CPT0161840009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L003_R1_001.unaln.bam 219186432 BAM S28_L003_R1 submitted_unaligned CPTAC3 090be82d-7bac-4f63-a84e-829d3219210b e330c6f69c1f89ce9df67531f886a20e {"aliquot_tag": "ALQ_fabd5b4", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.miRNA-Seq.T.hg38 C3L-02556 CCRCC miRNA-Seq tumor CPT0161820009 de21b996-2754-4c45-a4d2-d6237167f312_mirnaseq_gdc_realn.bam 248239200 BAM harmonized CPTAC3 9f533623-afd1-4888-821a-261cff0cbf78 e55a0056a05ce78d33fca45110771021 {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.RNA-Seq.chimeric.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.chimeric.gdc_realn.bam 106732796 BAM chimeric harmonized CPTAC3 effd32a3-1bae-4e40-8a56-623d0e865a36 0adf043ed3b1fb512783ec8909e196ca {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.RNA-Seq.chimeric.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.chimeric.gdc_realn.bam 137604758 BAM chimeric harmonized CPTAC3 e17c5f95-f784-4def-8fa9-1a67a244bba4 bccd9eeb432e512cb922692ad06e4a1f {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.RNA-Seq.genomic.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.genomic.gdc_realn.bam 8967642182 BAM genomic harmonized CPTAC3 165edcb0-68c5-4385-b385-fedc9ec7b379 7e7679a7ef87480cd58ef3382135e4b7 {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.RNA-Seq.genomic.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.genomic.gdc_realn.bam 7535184980 BAM genomic harmonized CPTAC3 672b8f50-cbda-4fcc-b20c-659ef58468db 4db745b3eebf25cfe9cea7287429664a {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.RNA-Seq.S10_L005_R1.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R1_001.fastq.gz 4241623160 FASTQ S10_L005_R1 submitted_unaligned CPTAC3 b22c88c6-36ff-4e53-b1a5-937c3ee821bc 78605b5fadb77eea51e216c9cac17744 {"aliquot_tag": "ALQ_fabd5b4", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.RNA-Seq.S10_L005_R2.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R2_001.fastq.gz 4061007807 FASTQ S10_L005_R2 submitted_unaligned CPTAC3 ee6733dd-b380-426e-945a-f18640e23c50 ef63e72e3599698b36f01b83799e94c0 {"aliquot_tag": "ALQ_fabd5b4", "sample": "S10", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.RNA-Seq.S17_L006_R1.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R1_001.fastq.gz 3548087216 FASTQ S17_L006_R1 submitted_unaligned CPTAC3 b717e57d-8708-49d4-9132-7536787e70b6 f8b16ed57a0b09bf1c8fb5eeecda2280 {"aliquot_tag": "ALQ_80eb2014", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.RNA-Seq.S17_L006_R2.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R2_001.fastq.gz 3755777817 FASTQ S17_L006_R2 submitted_unaligned CPTAC3 b95128aa-5522-40e5-bb51-d469d38f8ccb ebc689aa61dbbba4a8c50972dc6deb1b {"aliquot_tag": "ALQ_80eb2014", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.RNA-Seq.transcriptome.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.transcriptome.gdc_realn.bam 10374472145 BAM transcriptome harmonized CPTAC3 9dd8304b-87c9-4db3-bd9e-929e0763cbbe 06c3b08790c4514a308a11672e2351b7 {"aliquot_tag": "ALQ_fabd5b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.RNA-Seq.transcriptome.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.transcriptome.gdc_realn.bam 9717419402 BAM transcriptome harmonized CPTAC3 a7afb5c6-9b8e-4a1d-a93e-9e8bcea2f06c 088e08348b902fde1b116bf6c93d9652 {"aliquot_tag": "ALQ_80eb2014", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.WGS.A C3L-02556 CCRCC WGS tissue_normal CPT0161840006 CPT0161840006.WholeGenome.RP-1303.bam 60859386031 BAM submitted_aligned CPTAC3 13403413-d910-4204-afc4-8207487a4884 5bbf0d53641e466f48de13b183478d1e {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.WGS.A.hg38 C3L-02556 CCRCC WGS tissue_normal CPT0161840006 b7a04871-4d92-46d1-a82a-c5633050cdb2_wgs_gdc_realn.bam 89913617320 BAM harmonized CPTAC3 d7e9ac03-bfef-4ff6-9ee2-6c2f0d1347ca 751eef3029badc6979c7d842cf5caf30 {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.WGS.N C3L-02556 CCRCC WGS blood_normal CPT0162570002 CPT0162570002.WholeGenome.RP-1303.bam 61402066287 BAM submitted_aligned CPTAC3 00d6beb8-9232-4817-a898-0024fa02282f b7ed71bfc2067396d42275ba11c62819 {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02556.WGS.N.hg38 C3L-02556 CCRCC WGS blood_normal CPT0162570002 8c1ab021-ae21-443e-b11e-2a1fbe42e76e_wgs_gdc_realn.bam 88661047806 BAM harmonized CPTAC3 351b67d4-02d7-481c-92fc-ca1c7df7296f 1e8078a643075e75057249e4dc116f27 {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02556.WGS.T C3L-02556 CCRCC WGS tumor CPT0161820011 CPT0161820011.WholeGenome.RP-1303.bam 63186672487 BAM submitted_aligned CPTAC3 3786f814-20b5-46e8-bd9b-b1118ab2431b a6fd5c2880c4a3a006d35de842d5aa12 {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.WGS.T.hg38 C3L-02556 CCRCC WGS tumor CPT0161820011 6edebf20-1868-4b4d-9183-d09a46d4202c_wgs_gdc_realn.bam 91933761380 BAM harmonized CPTAC3 7d407861-bfbc-41d7-9b9f-a85a9c308f86 411cb43979e8dd477eadf7a85716cb85 {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.WXS.A C3L-02556 CCRCC WXS tissue_normal CPT0161840006 CPT0161840006.WholeExome.RP-1303.bam 21105673389 BAM submitted_aligned CPTAC3 45f86ad5-f152-44f0-8d66-0b8f6912e6f4 67f3760b93ff8e6c2e20016912d4483d {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.WXS.A.hg38 C3L-02556 CCRCC WXS tissue_normal CPT0161840006 b7a04871-4d92-46d1-a82a-c5633050cdb2_wxs_gdc_realn.bam 29567379553 BAM harmonized CPTAC3 79e108e8-52e8-42dc-a800-be23772121af e201b2e0915a8de303a85d54a252dcda {"aliquot_tag": "ALQ_9f14c825", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02556.WXS.N C3L-02556 CCRCC WXS blood_normal CPT0162570002 CPT0162570002.WholeExome.RP-1303.bam 23611604712 BAM submitted_aligned CPTAC3 562e51fe-c072-4579-bcc2-441178e67481 4e7adf9c3662e837cc8a01eb18baa83d {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02556.WXS.N.hg38 C3L-02556 CCRCC WXS blood_normal CPT0162570002 8c1ab021-ae21-443e-b11e-2a1fbe42e76e_wxs_gdc_realn.bam 32776707948 BAM harmonized CPTAC3 63b67bd3-31a5-4638-9b62-c4db52c9dd3f 651dcc239f6d7f02e7b8d978c5870e19 {"aliquot_tag": "ALQ_52af7faf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02556.WXS.T C3L-02556 CCRCC WXS tumor CPT0161820011 CPT0161820011.WholeExome.RP-1303.bam 44476572818 BAM submitted_aligned CPTAC3 b5630c5d-dc01-4e57-88b6-6a04bdf4210b ed30f62a2b353ded4d5186718d0122bf {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02556.WXS.T.hg38 C3L-02556 CCRCC WXS tumor CPT0161820011 6edebf20-1868-4b4d-9183-d09a46d4202c_wxs_gdc_realn.bam 61511896070 BAM harmonized CPTAC3 aafc0495-0439-4f7e-8233-857f436e38d9 f9b3f77e83d4641573f55a89e9ab4b8e {"aliquot_tag": "ALQ_972b9967", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02557.MethArray.Green.T C3L-02557 UCEC Methylation_Array tumor CPT0128610006 203219650098_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a1994f66-70dd-42c6-a54b-da9484218687 56c7a6dc9abf7a8b74ea09a25f256835 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.MethArray.Red.T C3L-02557 UCEC Methylation_Array tumor CPT0128610006 203219650098_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 7ddbf852-8a6b-4f6a-ba65-ff41137c632d 7b3578ccd08c09a4b2d0a4b47e830b5c {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.miRNA-Seq.A.hg38 C3L-02557 UCEC miRNA-Seq tissue_normal CPT0128630009 2f96f03b-ecbf-41f7-9c39-2b113b61101a_mirnaseq_gdc_realn.bam 288465282 BAM harmonized CPTAC3 719663f1-4297-478d-8b32-ef5eb897150c d61beff17b1c8c2122c10d0a8fb4b7ff {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.miRNA-Seq.S25_L005_R1.T C3L-02557 UCEC miRNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTGAT_S25_L005_R1_001.unaln.bam 151191206 BAM S25_L005_R1 submitted_unaligned CPTAC3 2c6231dd-e47f-4561-bc9c-789247e3c5af becb84e7a8e98a98947cdc73c8e64837 {"aliquot_tag": "ALQ_ec93709d", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.miRNA-Seq.S39_L003_R1.A C3L-02557 UCEC miRNA-Seq tissue_normal CPT0128630009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L003_R1_001.unaln.bam 249180933 BAM S39_L003_R1 submitted_unaligned CPTAC3 3ca3735c-fe98-474a-903f-7e5b3f52c0d0 4633bb38c6b15712ba3a61e1407e4dec {"aliquot_tag": "ALQ_965323fd", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.miRNA-Seq.T.hg38 C3L-02557 UCEC miRNA-Seq tumor CPT0128610009 6f760c5e-7c11-483f-8807-f556571a9802_mirnaseq_gdc_realn.bam 165071558 BAM harmonized CPTAC3 c9721d00-7df7-41c3-b857-5664c9746644 b7b5688aba07f98abf20f3b0f2a63d3d {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.chimeric.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.chimeric.gdc_realn.bam 104088832 BAM chimeric harmonized CPTAC3 b43a1e01-ef12-4899-8afe-09760dcb157d 449a6168075d6f2b97fb5142335021d8 {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.RNA-Seq.chimeric.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.chimeric.gdc_realn.bam 65730898 BAM chimeric harmonized CPTAC3 4116d176-b7b3-472a-92e7-905ad5cb3a35 6cf1790785f3437f34a8e1ddd3af0b8e {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.chimeric.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.chimeric.gdc_realn.bam 216126330 BAM chimeric harmonized CPTAC3 eed2fdbc-8a59-48f4-9b58-fea1446b769b 18d3520350cf8d6bedc63e84a16646e2 {"aliquot_tag": "ALQ_14c58621", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.genomic.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.genomic.gdc_realn.bam 7903987536 BAM genomic harmonized CPTAC3 93ef344b-1ebb-40c8-ad54-f653b3a24eab 9d9b2be378348c577e0c376eb2109c1a {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.RNA-Seq.genomic.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.genomic.gdc_realn.bam 6896036633 BAM genomic harmonized CPTAC3 abdc5bf9-52d0-43e5-a7da-477f4b448ebe d36a119d15d9186ae10b2a7cc7ad9143 {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.genomic.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.genomic.gdc_realn.bam 10360131763 BAM genomic harmonized CPTAC3 725b5683-8640-4acc-9617-c8d592061762 a19df831c04b5c55578adbb86750e4e7 {"aliquot_tag": "ALQ_14c58621", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.S23_L008_R1.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R1_001.fastq.gz 3840681261 FASTQ S23_L008_R1 submitted_unaligned CPTAC3 433a6377-20d2-4216-9912-d7f6f1f35013 dd87e26366cbb1858c4710b47dca0eef {"aliquot_tag": "ALQ_965323fd", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.RNA-Seq.S23_L008_R2.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R2_001.fastq.gz 4169058544 FASTQ S23_L008_R2 submitted_unaligned CPTAC3 88b45d63-9c6d-41d2-b919-2008598de3bc 174d193d00931fff3355a53a1e3fde9b {"aliquot_tag": "ALQ_965323fd", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.RNA-Seq.S5_L002_R1.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R1_001.fastq.gz 3291331605 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 33cbabe8-0746-41b2-ada5-7b668b6cedfc bc9b3a94ac3e270324290e71efd6d9d5 {"aliquot_tag": "ALQ_ec93709d", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.S5_L002_R2.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R2_001.fastq.gz 3220497478 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 2cd64bbc-c722-40ab-ae0f-2b475b8ddf90 6223874e7b64097e2f71f92330015ef9 {"aliquot_tag": "ALQ_ec93709d", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.S9_R1.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R1_001.fastq.gz 6097878206 FASTQ S9_R1 submitted_unaligned CPTAC3 781ed3ac-092b-4ff3-be64-da6ddc4489f5 176314d8d22175cfee7ede6a2e5c0d4a {"aliquot_tag": "ALQ_14c58621", "sample": "S9", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.S9_R2.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R2_001.fastq.gz 6371845610 FASTQ S9_R2 submitted_unaligned CPTAC3 4589e270-feaa-40e8-b8a7-51ce297b7faa f66fe2d77555b60acdfd71304bfbd740 {"aliquot_tag": "ALQ_14c58621", "sample": "S9", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.transcriptome.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.transcriptome.gdc_realn.bam 8748148277 BAM transcriptome harmonized CPTAC3 f70b6233-9b23-4825-8983-bfd981757ceb 38306f0e827e92ee1d3c35b89299a6c8 {"aliquot_tag": "ALQ_965323fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.RNA-Seq.transcriptome.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.transcriptome.gdc_realn.bam 8718932781 BAM transcriptome harmonized CPTAC3 36882eae-de93-4b64-9b07-d9b0dd2244cf f6b7264109a537e6077e45e674b4e12d {"aliquot_tag": "ALQ_ec93709d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.RNA-Seq.transcriptome.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.transcriptome.gdc_realn.bam 6493764077 BAM transcriptome harmonized CPTAC3 e9ba9b87-132c-47bf-9945-1130b1adf517 e2ee76afd154450bf2a200a50e8f685a {"aliquot_tag": "ALQ_14c58621", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.WGS.A C3L-02557 UCEC WGS tissue_normal CPT0128630006 CPT0128630006.WholeGenome.RP-1303.bam 59734738877 BAM submitted_aligned CPTAC3 423834a1-7a65-4e12-8210-95fe71b06880 fd1abbc83d869467796a2837dd29d5ee {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.WGS.A.hg38 C3L-02557 UCEC WGS tissue_normal CPT0128630006 136a45ed-0c1e-4773-8d40-808c7e4f1bba_wgs_gdc_realn.bam 89315864612 BAM harmonized CPTAC3 a2b41edb-8fa2-4c34-97d2-7492d146d7d6 803223397a1003715e881c3899042fd1 {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.WGS.N C3L-02557 UCEC WGS blood_normal CPT0129430002 CPT0129430002.WholeGenome.RP-1303.bam 52865535379 BAM submitted_aligned CPTAC3 30e36f0d-c1c3-4a7f-9c26-651f79740fcb f6dec8c78f0101681c406b2268b2aa47 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02557.WGS.N.hg38 C3L-02557 UCEC WGS blood_normal CPT0129430002 2ace32af-b1e3-497b-8f07-ea54309b1966_wgs_gdc_realn.bam 76337462965 BAM harmonized CPTAC3 0b746d94-33f1-4fdc-b3fd-16ddcf42e591 75a503e917bbd4ccb89914923e2a3a34 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02557.WGS.T C3L-02557 UCEC WGS tumor CPT0128610006 CPT0128610006.WholeGenome.RP-1303.bam 60896563137 BAM submitted_aligned CPTAC3 a0d6161a-f22a-4de8-8016-0d9d044c4463 8881bebf2a8ffe9d6b495b905d4fd285 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.WGS.T.hg38 C3L-02557 UCEC WGS tumor CPT0128610006 283d4f58-c25b-4dca-a0a9-a123b32ade28_wgs_gdc_realn.bam 87652803431 BAM harmonized CPTAC3 97b955be-19d5-4750-919d-eaa2f05f57a8 5b4df86ef42b87a635423b94ae864a59 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.WXS.A C3L-02557 UCEC WXS tissue_normal CPT0128630006 CPT0128630006.WholeExome.RP-1303.bam 23583555899 BAM submitted_aligned CPTAC3 324817c7-ad34-46e3-be22-3c05af70fa2d f4257ba4e58ef8b4b42b781bd2a4f1c4 {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.WXS.A.hg38 C3L-02557 UCEC WXS tissue_normal CPT0128630006 136a45ed-0c1e-4773-8d40-808c7e4f1bba_wxs_gdc_realn.bam 32620700506 BAM harmonized CPTAC3 c9fbd8ea-5045-410f-aef2-a8da318d121c a354f1998a5aaaef139ee1e241296fc1 {"aliquot_tag": "ALQ_6ec3e6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02557.WXS.N C3L-02557 UCEC WXS blood_normal CPT0129430002 CPT0129430002.WholeExome.RP-1303.bam 23371800701 BAM submitted_aligned CPTAC3 eec635cd-bab2-43cc-be7b-3817871d35da 5617add48ea906193d158dcf2be2ac14 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02557.WXS.N.hg38 C3L-02557 UCEC WXS blood_normal CPT0129430002 2ace32af-b1e3-497b-8f07-ea54309b1966_wxs_gdc_realn.bam 31831966242 BAM harmonized CPTAC3 992aa5c6-11ac-49d5-a9cf-c9fe81932447 a2efe6d1acd4a12cb5b009380d168b60 {"aliquot_tag": "ALQ_ea3e50ca", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02557.WXS.T C3L-02557 UCEC WXS tumor CPT0128610006 CPT0128610006.WholeExome.RP-1303.bam 19729441627 BAM submitted_aligned CPTAC3 222acc5c-cbe4-4fff-a7bc-c617ed98be10 35181dbb96dc56524b63adf70c79c7c2 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02557.WXS.T.hg38 C3L-02557 UCEC WXS tumor CPT0128610006 283d4f58-c25b-4dca-a0a9-a123b32ade28_wxs_gdc_realn.bam 27007574624 BAM harmonized CPTAC3 39880efe-bcea-4c4a-ba5c-14d79468bce9 d7ab6d68198e6b8df744769cef5e19f4 {"aliquot_tag": "ALQ_7c2c6d0c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02559.MethArray.Green.A C3L-02559 LUAD Methylation_Array tissue_normal CPT0128300006 203219670122_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 53d08a99-165b-4b56-a4c4-5353838aef36 7fcdbc51b844d8fe76152f2ec5a962a1 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.MethArray.Green.T C3L-02559 LUAD Methylation_Array tumor CPT0128290006 203219650004_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 7a5afd51-1291-4008-a944-8c6a809a9648 27458f231d92567ca23a3fc8fa95cee2 {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.MethArray.Red.A C3L-02559 LUAD Methylation_Array tissue_normal CPT0128300006 203219670122_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 8d2f77ec-d9e3-4d14-ae1f-09012414f1ef 03d848e9395725fc76c3390f3bb360ec {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.MethArray.Red.T C3L-02559 LUAD Methylation_Array tumor CPT0128290006 203219650004_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 f6349c0b-30a3-48dc-a1fe-69965bab4322 14597e582ef77e150595baecb61c5ddf {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.miRNA-Seq.A.hg38 C3L-02559 LUAD miRNA-Seq tissue_normal CPT0128300009 ce82dcda-bd95-430c-aa71-e8472422925f_mirnaseq_gdc_realn.bam 198479595 BAM harmonized CPTAC3 01534d80-d9e3-4d04-8b34-9e26b3391037 31546b548d771c738f75cde5254c8958 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.miRNA-Seq.S21_L004_R1.T C3L-02559 LUAD miRNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTTTCG_S21_L004_R1_001.unaln.bam 182357104 BAM S21_L004_R1 submitted_unaligned CPTAC3 00f7447f-6d16-40d8-ab95-99c15c06884b ee537ab662db222c9176fa9f69264fd2 {"aliquot_tag": "ALQ_4772794a", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.miRNA-Seq.S36_L003_R1.A C3L-02559 LUAD miRNA-Seq tissue_normal CPT0128300009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCAACA_S36_L003_R1_001.unaln.bam 176158144 BAM S36_L003_R1 submitted_unaligned CPTAC3 7c60e43d-f8a6-4a3f-a3b1-067583c9167b ceb3b6b2de8ec6334c8c993ce929a777 {"aliquot_tag": "ALQ_813ec89e", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.miRNA-Seq.T.hg38 C3L-02559 LUAD miRNA-Seq tumor CPT0128290009 10827a72-b85b-410d-bf70-b2f9f08d296a_mirnaseq_gdc_realn.bam 197529950 BAM harmonized CPTAC3 45cd39ca-9874-44c9-a90f-1f6597c88511 fb2a186abfbb52bdd9619c26a3efc9f3 {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.RNA-Seq.chimeric.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.chimeric.gdc_realn.bam 71397249 BAM chimeric harmonized CPTAC3 1589a3ec-0cbb-4b25-b9ae-e8c774345e96 dc95f6aa33003cd1f7de81b29bf8ad37 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.RNA-Seq.chimeric.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.chimeric.gdc_realn.bam 61751028 BAM chimeric harmonized CPTAC3 9f2a8ed8-3291-47cc-95fa-e52fcc661a8f e744a491e090bee1c2ccc3e51919c57f {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.RNA-Seq.genomic.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.genomic.gdc_realn.bam 7884666956 BAM genomic harmonized CPTAC3 3e0bc628-9ec3-4f41-855c-bb74fe84fc39 e23d4aa47ac7a89c93d6ba3e3ca2d8f5 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.RNA-Seq.genomic.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.genomic.gdc_realn.bam 7961523673 BAM genomic harmonized CPTAC3 b10f776a-7f5f-4ad8-8210-af13c3a5ff86 675770fc286ff2b54a35f4ed42ea928c {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.RNA-Seq.S21_L007_R1.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R1_001.fastq.gz 3744251953 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 8f33216c-d930-4b62-b486-fc174d828c87 2daa993206248c1d8985a62c0d18ef0d {"aliquot_tag": "ALQ_813ec89e", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.RNA-Seq.S21_L007_R2.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R2_001.fastq.gz 3954305966 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 eb96735b-b6f3-4f09-ac7e-4687d395bccd f4d163486ae23951debbe3cc7d32fced {"aliquot_tag": "ALQ_813ec89e", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.RNA-Seq.S3_L001_R1.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R1_001.fastq.gz 3823360772 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 ab7aee22-bbe6-44ff-b4a1-eb747707105f ef562ecb8be3d35a6bc2b55e61dc5895 {"aliquot_tag": "ALQ_4772794a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.RNA-Seq.S3_L001_R2.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R2_001.fastq.gz 4132241962 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 7813027e-f048-44fb-8774-5fde1c2f3a44 0c980645ddf5caa66c5f5bb34e535a0e {"aliquot_tag": "ALQ_4772794a", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.RNA-Seq.transcriptome.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.transcriptome.gdc_realn.bam 9297994837 BAM transcriptome harmonized CPTAC3 e6f1351a-76e8-47cc-ae38-520a9233f6d7 fa1efbb919e73d891bb62696b6226004 {"aliquot_tag": "ALQ_813ec89e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.RNA-Seq.transcriptome.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.transcriptome.gdc_realn.bam 11007010176 BAM transcriptome harmonized CPTAC3 a4a2edba-3d5a-482f-8721-069edec4ffe4 a1fb50229d8d8b901d8b7baa7c5febf9 {"aliquot_tag": "ALQ_4772794a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.WGS.A C3L-02559 LUAD WGS tissue_normal CPT0128300006 CPT0128300006.WholeGenome.RP-1303.bam 60641694956 BAM submitted_aligned CPTAC3 2d7c6354-ba8a-4fd4-a146-fce5aa2a5618 989d5d9d67c745d67b0492973076c4f7 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.WGS.A.hg38 C3L-02559 LUAD WGS tissue_normal CPT0128300006 42f4a8c2-a045-42c0-b0a2-3f54d68c76a7_wgs_gdc_realn.bam 88271559257 BAM harmonized CPTAC3 0575281c-1b27-4f15-8bef-ccc1f702b351 4ee6312307dc58f818a859f7c3353950 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.WGS.N C3L-02559 LUAD WGS blood_normal CPT0129460002 CPT0129460002.WholeGenome.RP-1303.bam 59990251419 BAM submitted_aligned CPTAC3 db1f81ee-d4ae-469e-8c03-f89b90652780 969ae04938c361cb5a9e8f502bb42949 {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02559.WGS.N.hg38 C3L-02559 LUAD WGS blood_normal CPT0129460002 0065cd02-316a-42a2-8efc-cebe2bb95dca_wgs_gdc_realn.bam 85526956843 BAM harmonized CPTAC3 305f1f84-f450-487f-85ac-03a149833893 c8855296db5770b777ed0547cf1814af {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02559.WGS.T C3L-02559 LUAD WGS tumor CPT0128290006 CPT0128290006.WholeGenome.RP-1303.bam 84167246228 BAM submitted_aligned CPTAC3 a0bdc6bc-6fa9-47a8-adf0-ab0eb1c50800 46b20737db40bd5d4460e462e0446c98 {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.WGS.T.hg38 C3L-02559 LUAD WGS tumor CPT0128290006 95f0e979-c3d5-481d-93dc-68b56beb48ef_wgs_gdc_realn.bam 126177188878 BAM harmonized CPTAC3 076d6452-2883-4a57-9ea4-62f9b075164b 7c9d6fdc3d593c6fcc691168910626a5 {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.WXS.A C3L-02559 LUAD WXS tissue_normal CPT0128300006 CPT0128300006.WholeExome.RP-1303.bam 20448783609 BAM submitted_aligned CPTAC3 39ab7eff-dd32-4424-b8d0-cfa1f78d2b02 64c1c121295d2b3b0f2c0594c21721e8 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.WXS.A.hg38 C3L-02559 LUAD WXS tissue_normal CPT0128300006 42f4a8c2-a045-42c0-b0a2-3f54d68c76a7_wxs_gdc_realn.bam 28068207116 BAM harmonized CPTAC3 0876b7a0-2d30-4a40-a108-eddbf69cd9d7 98a1326f0956b366952e25dcb0bc82a7 {"aliquot_tag": "ALQ_1181d50f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02559.WXS.N C3L-02559 LUAD WXS blood_normal CPT0129460002 CPT0129460002.WholeExome.RP-1303.bam 26027069199 BAM submitted_aligned CPTAC3 40f1e295-37d9-4385-9328-20a7b688fdfc 9ec4ab15fc95059d929adc43236c098b {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02559.WXS.N.hg38 C3L-02559 LUAD WXS blood_normal CPT0129460002 0065cd02-316a-42a2-8efc-cebe2bb95dca_wxs_gdc_realn.bam 35674161409 BAM harmonized CPTAC3 29e7ae17-8028-4a91-b96d-68fdd332a31e d5bc3e71a93a3b7dc72f24bb3dab68e3 {"aliquot_tag": "ALQ_22dedfba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02559.WXS.T C3L-02559 LUAD WXS tumor CPT0128290006 CPT0128290006.WholeExome.RP-1303.bam 17509679729 BAM submitted_aligned CPTAC3 8c2bb5f5-05d5-4f2b-b755-8611e7422ce2 c807a374db842c8c29c3c50c619255da {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02559.WXS.T.hg38 C3L-02559 LUAD WXS tumor CPT0128290006 95f0e979-c3d5-481d-93dc-68b56beb48ef_wxs_gdc_realn.bam 24325839649 BAM harmonized CPTAC3 62db5b53-5cb0-454b-b3e6-78b83f160a3f 147501cc37e6b44ed8c0574c5d613b0a {"aliquot_tag": "ALQ_d7cd64db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.MethArray.Green.A C3L-02560 LUAD Methylation_Array tissue_normal CPT0128430006 203219650218_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7262e131-95d9-4648-bedf-7c5fbde8d1ae f986ebfa09361f43cb3826b05e310c06 {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.MethArray.Green.T C3L-02560 LUAD Methylation_Array tumor CPT0128420006 203219640157_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f0c2f5ee-5b18-4657-ae67-8a34ff52f4d0 87554fd8d25544870d08c58980474d32 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.MethArray.Red.A C3L-02560 LUAD Methylation_Array tissue_normal CPT0128430006 203219650218_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 b63a0d14-f001-4363-a369-0053640d5ed3 9892bae4d82615ee9155da46ac4d5dfa {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.MethArray.Red.T C3L-02560 LUAD Methylation_Array tumor CPT0128420006 203219640157_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 b3db4037-e0c5-4653-9f3a-fb7e0c24674c 0746ebf5ab27d3f481cb70d5b25b2ef2 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.miRNA-Seq.A.hg38 C3L-02560 LUAD miRNA-Seq tissue_normal CPT0128430009 e34f7427-29dc-4462-aedd-7fb251814110_mirnaseq_gdc_realn.bam 236849831 BAM harmonized CPTAC3 43337563-165d-4f26-8d5d-e130f1be4f60 27f884c2ba3d7ca5ce1422821b2cc84f {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.miRNA-Seq.S24_L004_R1.T C3L-02560 LUAD miRNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0176_AHYGLVBBXX_GGTAGC_S24_L004_R1_001.unaln.bam 182342805 BAM S24_L004_R1 submitted_unaligned CPTAC3 0e23e387-c68b-42b8-9921-0ce39f69f2fc 645a1714e2ed9912006ca3c005372a70 {"aliquot_tag": "ALQ_e6fbab46", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.miRNA-Seq.S38_L003_R1.A C3L-02560 LUAD miRNA-Seq tissue_normal CPT0128430009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L003_R1_001.unaln.bam 213562661 BAM S38_L003_R1 submitted_unaligned CPTAC3 3645e5f3-1018-45cc-a74e-cd1035e2873e 7df27754de5b74a373b82eff73a0771e {"aliquot_tag": "ALQ_db9b82f6", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.miRNA-Seq.T.hg38 C3L-02560 LUAD miRNA-Seq tumor CPT0128420009 8e5e2bf4-8464-49e7-9240-7dd29f8fd79e_mirnaseq_gdc_realn.bam 204140553 BAM harmonized CPTAC3 f34320a6-49b9-487c-a4f6-6e08d166e0b1 5359992ac5d478c76dcc66349c45750e {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.RNA-Seq.chimeric.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.chimeric.gdc_realn.bam 51744730 BAM chimeric harmonized CPTAC3 a1120493-157a-46cc-83d6-06c86e74d78b e2f27ec9f69d7a140cec4fa7c054347e {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.RNA-Seq.chimeric.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.chimeric.gdc_realn.bam 69987282 BAM chimeric harmonized CPTAC3 c632bb32-e560-4def-8e43-d63cf2272fcf 8ff5863856c56fd59bf63e66505a0189 {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.RNA-Seq.genomic.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.genomic.gdc_realn.bam 8692283968 BAM genomic harmonized CPTAC3 96bf8720-47df-4404-b308-8e7a6e64ead0 d5c21c6eb6cb6ed381fccc5d29177e5f {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.RNA-Seq.genomic.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.genomic.gdc_realn.bam 8825479469 BAM genomic harmonized CPTAC3 589afb6b-c9d2-4a1d-ba55-cc29ffef0742 ac3d6d362cdae074d592960fe16ccccd {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.RNA-Seq.S22_L008_R1.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R1_001.fastq.gz 3940099448 FASTQ S22_L008_R1 submitted_unaligned CPTAC3 51c04bce-ad69-469b-98dc-8c69a227c7be 1c3087d86bd75500700ab73aa57a70e9 {"aliquot_tag": "ALQ_db9b82f6", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.RNA-Seq.S22_L008_R2.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R2_001.fastq.gz 4175641603 FASTQ S22_L008_R2 submitted_unaligned CPTAC3 7464a550-6337-4d64-ba60-5ed008c79aea 72940a369bcf06836d598e7e0ccded7b {"aliquot_tag": "ALQ_db9b82f6", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.RNA-Seq.S4_L001_R1.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4000937527 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 f27b1c4d-286d-4e6a-be1f-25990e08b452 01157b572168fc05c9cf241a7cae39b3 {"aliquot_tag": "ALQ_e6fbab46", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.RNA-Seq.S4_L001_R2.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4271249432 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 815eeddf-9d16-404d-ab02-0e79d61f2d10 1c9e3743e400e4feda96d85180c87167 {"aliquot_tag": "ALQ_e6fbab46", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.RNA-Seq.transcriptome.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.transcriptome.gdc_realn.bam 9983102897 BAM transcriptome harmonized CPTAC3 02729671-4ffd-4791-8501-82dad69362a9 dc1d62f06e1bf1a410a6d1bc74fe9454 {"aliquot_tag": "ALQ_db9b82f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.RNA-Seq.transcriptome.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.transcriptome.gdc_realn.bam 11494030356 BAM transcriptome harmonized CPTAC3 4e196ffc-de88-4b20-9034-39b4decd021a 971d02dd290f9ab41c1f928abd495f81 {"aliquot_tag": "ALQ_e6fbab46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.WGS.A C3L-02560 LUAD WGS tissue_normal CPT0128430006 CPT0128430006.WholeGenome.RP-1303.bam 72688910012 BAM submitted_aligned CPTAC3 1ab787f1-1529-4789-b75c-8aa9475f12f3 090a32e9b6b5d273f9bb1736a6ad9745 {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.WGS.A.hg38 C3L-02560 LUAD WGS tissue_normal CPT0128430006 3816b40f-a0a2-4e60-a511-ad06451fccba_wgs_gdc_realn.bam 105559487770 BAM harmonized CPTAC3 287a55e9-63ea-4158-b309-4213e1022487 6b420977876b221a25403549045f886a {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.WGS.N C3L-02560 LUAD WGS blood_normal CPT0129440002 CPT0129440002.WholeGenome.RP-1303.bam 53218697338 BAM submitted_aligned CPTAC3 9c4c3cc8-d31d-4fbd-aec2-608d3fbeb820 e18d207ffce11baa632b41959e67a798 {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02560.WGS.N.hg38 C3L-02560 LUAD WGS blood_normal CPT0129440002 598aff31-11ff-4b23-a95f-b00cc941420e_wgs_gdc_realn.bam 77186176450 BAM harmonized CPTAC3 5d04545d-33c9-4a46-aef5-a0e1c68a7874 aec53f7fde62435f29f7b13fb406166a {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02560.WGS.T C3L-02560 LUAD WGS tumor CPT0128420006 CPT0128420006.WholeGenome.RP-1303.bam 62014510271 BAM submitted_aligned CPTAC3 6110e48f-c5b7-401c-b6c3-7eb94f2c4873 63da5d4590bcca74603844b6da67e03b {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.WGS.T.hg38 C3L-02560 LUAD WGS tumor CPT0128420006 3dc4a8e3-2ee0-42d5-ba5a-423a4d3ee473_wgs_gdc_realn.bam 90412536623 BAM harmonized CPTAC3 9a939bbc-209c-4f40-abdc-665c16b9bace c3bbac0e912d559b140f3c3a43cb9d4f {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.WXS.A C3L-02560 LUAD WXS tissue_normal CPT0128430006 CPT0128430006.WholeExome.RP-1303.bam 21795046743 BAM submitted_aligned CPTAC3 938bbc80-4835-4dfa-8753-8679cff91f9d 79ca5d454d11779aa50c3c0bd33f33dd {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.WXS.A.hg38 C3L-02560 LUAD WXS tissue_normal CPT0128430006 3816b40f-a0a2-4e60-a511-ad06451fccba_wxs_gdc_realn.bam 30100395940 BAM harmonized CPTAC3 b26f8965-2fe9-4e6c-b27d-0c613459aaf7 9a0f99d98ae8107853344cd10f054e74 {"aliquot_tag": "ALQ_4b249f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02560.WXS.N C3L-02560 LUAD WXS blood_normal CPT0129440002 CPT0129440002.WholeExome.RP-1303.bam 27619289537 BAM submitted_aligned CPTAC3 4bbd6923-afaa-4bad-8051-1b7bcf16959f 3324de641376928209a6c6a823870e62 {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02560.WXS.N.hg38 C3L-02560 LUAD WXS blood_normal CPT0129440002 598aff31-11ff-4b23-a95f-b00cc941420e_wxs_gdc_realn.bam 38453363383 BAM harmonized CPTAC3 300a3333-08df-486e-87f3-9a149558de8d a7443dead49fa3c3be3676199e3ac10b {"aliquot_tag": "ALQ_581e8cda", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02560.WXS.T C3L-02560 LUAD WXS tumor CPT0128420006 CPT0128420006.WholeExome.RP-1303.bam 18002564535 BAM submitted_aligned CPTAC3 3ff6fd70-5980-4a5d-bb2e-8cb05b951cf4 ad63634c013f66b2c00fc0fcfc86c691 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02560.WXS.T.hg38 C3L-02560 LUAD WXS tumor CPT0128420006 3dc4a8e3-2ee0-42d5-ba5a-423a4d3ee473_wxs_gdc_realn.bam 24842902495 BAM harmonized CPTAC3 cb62feaa-ca81-4f81-ad26-555b8d7b44fc 3ea1e05829918dc36816de2d6edbdae6 {"aliquot_tag": "ALQ_7644b6d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.MethArray.Green.A C3L-02601 LUAD Methylation_Array tissue_normal CPT0128340006 203219650042_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b47b7ff1-b5b8-43fb-ae8c-f9c79b27e680 32cd82eeac6ddb4869b3b7757d4c7a7d {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.MethArray.Green.T C3L-02601 LUAD Methylation_Array tumor CPT0128330006 203219640095_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 28ee2863-bc94-43f4-a86d-0176e324d8aa 8b6f13fd24c6c9c2739029ee3941efc1 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.MethArray.Red.A C3L-02601 LUAD Methylation_Array tissue_normal CPT0128340006 203219650042_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 1b8bae4a-c2c9-4113-bdb9-ee1854c2cf86 2e5a17559e66be80ef160151473e75cb {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.MethArray.Red.T C3L-02601 LUAD Methylation_Array tumor CPT0128330006 203219640095_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 bb64f19b-da54-4c66-9a87-8b3ec99200fe 11086e534077d511b17969379266fbd2 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.miRNA-Seq.A.hg38 C3L-02601 LUAD miRNA-Seq tissue_normal CPT0128340009 e70c3ce5-99f4-455e-a91a-a536dc1773d0_mirnaseq_gdc_realn.bam 315664946 BAM harmonized CPTAC3 83a2b75a-2341-454b-8f28-b9672dcd12a9 6bc03dec2ae8e6d861bada710771c76d {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.miRNA-Seq.S22_L004_R1.T C3L-02601 LUAD miRNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L004_R1_001.unaln.bam 215868293 BAM S22_L004_R1 submitted_unaligned CPTAC3 fee600e5-4e79-4139-bd72-3cc7e56fe6a9 9a4a09ba3a2aece2254e123060d94da1 {"aliquot_tag": "ALQ_c69eb24e", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.miRNA-Seq.S37_L003_R1.A C3L-02601 LUAD miRNA-Seq tissue_normal CPT0128340009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L003_R1_001.unaln.bam 286533081 BAM S37_L003_R1 submitted_unaligned CPTAC3 8dbeb1c2-9d1d-4866-a5f2-b5d2205b03c8 ddf981a250f0cf8c052a68622a1a538f {"aliquot_tag": "ALQ_74be6e5e", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.miRNA-Seq.T.hg38 C3L-02601 LUAD miRNA-Seq tumor CPT0128330009 28523112-4c6a-4ac9-94e9-a471ea735c0a_mirnaseq_gdc_realn.bam 235391640 BAM harmonized CPTAC3 68dc9819-ba82-4b95-85f6-acfa33f81f0f ed651bc522431b7b3b911129fc0dd2a6 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.RNA-Seq.chimeric.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.chimeric.gdc_realn.bam 58904118 BAM chimeric harmonized CPTAC3 4c1bd88c-f2ce-4257-8a7a-ec1ac157b78e b034a49b2af4eca394b5ffc635f07f34 {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.RNA-Seq.chimeric.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.chimeric.gdc_realn.bam 70406696 BAM chimeric harmonized CPTAC3 6113fd17-4920-430e-b7ca-93c97f8594bb e49044c63a63212013c8e466b5705318 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.RNA-Seq.genomic.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.genomic.gdc_realn.bam 7492308605 BAM genomic harmonized CPTAC3 bd2ce067-d5a4-4120-9c7e-ba96bf8b7709 c29687ae62ec45f21df11d5de9e8f30f {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.RNA-Seq.genomic.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.genomic.gdc_realn.bam 9199838906 BAM genomic harmonized CPTAC3 c3aecff4-1a4d-4084-a9d2-5dcfda715d39 462256d4c0d44a1da798d4bee0b38390 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.RNA-Seq.S11_L008_R1.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R1_001.fastq.gz 3367179400 FASTQ S11_L008_R1 submitted_unaligned CPTAC3 34399ca8-37a1-44a2-aa17-feafa1f65fa4 336c096950ea32a8c7b99bdfb188f4c7 {"aliquot_tag": "ALQ_74be6e5e", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.RNA-Seq.S11_L008_R2.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R2_001.fastq.gz 3548408011 FASTQ S11_L008_R2 submitted_unaligned CPTAC3 2c8b66ba-7d17-4911-9111-0b8d3daec383 fa4bce28c5801c47f07a1192b19a4cdd {"aliquot_tag": "ALQ_74be6e5e", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.RNA-Seq.S2_L001_R1.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 4010737292 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 e4d09861-9283-4247-9875-86db45537856 c806e701119097da4bbd23a34809e6d9 {"aliquot_tag": "ALQ_c69eb24e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.RNA-Seq.S2_L001_R2.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4256362118 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 26763bb2-4879-4636-b85d-d245a59e8518 4f09ba31ba543ec5fe3b819bb3642fb5 {"aliquot_tag": "ALQ_c69eb24e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.RNA-Seq.transcriptome.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.transcriptome.gdc_realn.bam 9162770911 BAM transcriptome harmonized CPTAC3 f04b03d5-a232-4cd7-a459-a38f3f43cdbb 5a38d1b451c5f0f7947ec319b80c520d {"aliquot_tag": "ALQ_74be6e5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.RNA-Seq.transcriptome.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.transcriptome.gdc_realn.bam 11646228894 BAM transcriptome harmonized CPTAC3 186c2494-d69f-49ea-9aa9-17c7c4d67082 259e427d5c9f4aca3d850c6e7b76a5e8 {"aliquot_tag": "ALQ_c69eb24e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.WGS.A C3L-02601 LUAD WGS tissue_normal CPT0128340006 CPT0128340006.WholeGenome.RP-1303.bam 62668411196 BAM submitted_aligned CPTAC3 3a85647a-4243-4f86-999d-59e227eb83fd 9903a18ad0fac092143ec955b87d7c38 {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.WGS.A.hg38 C3L-02601 LUAD WGS tissue_normal CPT0128340006 e6f520a2-ddc2-4fb3-815e-bb385cadb15a_wgs_gdc_realn.bam 91191515698 BAM harmonized CPTAC3 aa62746c-0eb6-4239-8a78-0151b6f60ad7 c5d5f7b98bdbe1bab953cef5dcfc672d {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.WGS.N C3L-02601 LUAD WGS blood_normal CPT0129450002 CPT0129450002.WholeGenome.RP-1303.bam 61865848563 BAM submitted_aligned CPTAC3 3646e953-e073-4912-aea7-46eff9a57ea9 1e63ba001d4481b13d861a48c5fe4bf5 {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02601.WGS.N.hg38 C3L-02601 LUAD WGS blood_normal CPT0129450002 765b365f-5e1c-46ad-9705-c3cd875123ab_wgs_gdc_realn.bam 88627953694 BAM harmonized CPTAC3 b6aec28d-37c8-4972-9331-d225a1b69386 7798ddd201be06ccc9bf8b64cdd88175 {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02601.WGS.T C3L-02601 LUAD WGS tumor CPT0128330006 CPT0128330006.WholeGenome.RP-1303.bam 56024729091 BAM submitted_aligned CPTAC3 0c68df48-c2e4-431b-affc-df4c1c93c651 8ad1789141dfaef15ce015fca67b98c4 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.WGS.T.hg38 C3L-02601 LUAD WGS tumor CPT0128330006 867bff7c-d0f4-4bb6-9705-c3abbedcd249_wgs_gdc_realn.bam 81231691674 BAM harmonized CPTAC3 00b8b4ab-ed47-4a8d-bbf3-78ed5af46898 6267d2c0e5dd92ed97c1b978bef06598 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.WXS.A C3L-02601 LUAD WXS tissue_normal CPT0128340006 CPT0128340006.WholeExome.RP-1303.bam 21951298786 BAM submitted_aligned CPTAC3 20176511-d47a-4f4a-96a8-f74d228383f6 6ebe30f10453058e0d0455de91da4c30 {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.WXS.A.hg38 C3L-02601 LUAD WXS tissue_normal CPT0128340006 e6f520a2-ddc2-4fb3-815e-bb385cadb15a_wxs_gdc_realn.bam 30549811512 BAM harmonized CPTAC3 3329770b-7cb0-4643-9a41-6255d301ef3b 3b7ea6d4e3261acbc6098850aa622d9d {"aliquot_tag": "ALQ_e40173cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02601.WXS.N C3L-02601 LUAD WXS blood_normal CPT0129450002 CPT0129450002.WholeExome.RP-1303.bam 23351733377 BAM submitted_aligned CPTAC3 53d6f6d2-fcc4-4afe-bace-a4824c5aa83a 1438a64ac720f32fe20aa8cb879c1c2f {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02601.WXS.N.hg38 C3L-02601 LUAD WXS blood_normal CPT0129450002 765b365f-5e1c-46ad-9705-c3cd875123ab_wxs_gdc_realn.bam 32236650950 BAM harmonized CPTAC3 e7dc058e-3ee2-4aea-8374-2e07b7911d97 f0fd0a4e73cb2fafbffc6ac44ad7806a {"aliquot_tag": "ALQ_657ea56a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02601.WXS.T C3L-02601 LUAD WXS tumor CPT0128330006 CPT0128330006.WholeExome.RP-1303.bam 26943533471 BAM submitted_aligned CPTAC3 4bab7efc-6214-48d2-bdd9-682ff635a75c 2da389439f74a3fe70c4db7b9bad8408 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02601.WXS.T.hg38 C3L-02601 LUAD WXS tumor CPT0128330006 867bff7c-d0f4-4bb6-9705-c3abbedcd249_wxs_gdc_realn.bam 36940843427 BAM harmonized CPTAC3 5e25bc63-b7d1-4ec8-bbba-a2a3fea509b5 447f09b61fd56da6be9ab2421ce70868 {"aliquot_tag": "ALQ_5621afdf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02602.MethArray.Green.T C3L-02602 UCEC Methylation_Array tumor CPT0113910009 203219670217_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2b523aad-1b1e-47b5-a14b-6502b3841222 c61478052bbd95aa1a39d392383efd7e {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.MethArray.Red.T C3L-02602 UCEC Methylation_Array tumor CPT0113910009 203219670217_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 5dd19231-fe77-4e5e-9482-0e7920f52ed2 e214be686e45c412a2a4ed3ae35551b6 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.miRNA-Seq.A.hg38 C3L-02602 UCEC miRNA-Seq tissue_normal CPT0113930009 6bac9dda-aa22-4dda-af4f-0334452b0181_mirnaseq_gdc_realn.bam 290598885 BAM harmonized CPTAC3 f44e378d-ee47-49f1-be8c-280b659339df 309ccea7f79f2110f5161b72bd3bcbb9 {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.miRNA-Seq.S32_L003_R1.T C3L-02602 UCEC miRNA-Seq tumor CPT0113910006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACTCA_S32_L003_R1_001.unaln.bam 169735024 BAM S32_L003_R1 submitted_unaligned CPTAC3 d0c5e624-5072-443b-b858-eafbc43da6dd e079e6059b244315bc2492137c40eb0a {"aliquot_tag": "ALQ_1f28cc0", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.miRNA-Seq.S35_L003_R1.A C3L-02602 UCEC miRNA-Seq tissue_normal CPT0113930009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L003_R1_001.unaln.bam 253384316 BAM S35_L003_R1 submitted_unaligned CPTAC3 a72aa29f-2963-41e6-bf70-62586e46e74a 9028c8ceec11674f13141598ad6e1519 {"aliquot_tag": "ALQ_eb8dc231", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.miRNA-Seq.T.hg38 C3L-02602 UCEC miRNA-Seq tumor CPT0113910006 92f64010-3fcb-417f-a3a1-88f5064fb3ae_mirnaseq_gdc_realn.bam 185484390 BAM harmonized CPTAC3 bdb8c40c-d9b9-4bed-a4e0-51675bb22985 05b38fa36186922e8e85710b4e5c4a16 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.chimeric.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.chimeric.gdc_realn.bam 63316121 BAM chimeric harmonized CPTAC3 77183051-cca0-4b96-b7ba-604656bea46c 797e04911572e8a020e4dfecf57dc51f {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.RNA-Seq.chimeric.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.chimeric.gdc_realn.bam 31533137 BAM chimeric harmonized CPTAC3 e596b6be-1637-4db0-b318-f26aa07a9284 5b7f0215293ba1e141deb0c4e1c39be0 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.chimeric.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.chimeric.gdc_realn.bam 195994368 BAM chimeric harmonized CPTAC3 e1119f60-b0be-4549-b58b-54d685aa79cf ed9dce606bbfccff89018b4c0732ee29 {"aliquot_tag": "ALQ_9b857381", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.genomic.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.genomic.gdc_realn.bam 7958810366 BAM genomic harmonized CPTAC3 be3dfd26-5298-487e-b213-ca0507db14ab 54fe0d9a0d4a27f7f0d10c56df419b8a {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.RNA-Seq.genomic.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.genomic.gdc_realn.bam 10778193780 BAM genomic harmonized CPTAC3 df1f0573-b50d-4b50-b986-58ad93c35b16 0f66efe1eefcd118cd21ee3bf6831370 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.genomic.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.genomic.gdc_realn.bam 11849086273 BAM genomic harmonized CPTAC3 6d8a7a7f-a66b-40cd-9595-2f041896fd12 d6fa67394ab78baca6bed8322c295941 {"aliquot_tag": "ALQ_9b857381", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.S12_L003_R1.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4665028403 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 90d6f0a0-a3f7-497d-a876-77a58f6dea3e cc3fe43424e3d5c1c8dc946ab4151766 {"aliquot_tag": "ALQ_1f28cc0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.S12_L003_R2.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 5058612340 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 112bfd35-f6a1-425d-96c4-b123f852ae4b a5a0645ee8c81c444866d7816d8a6f05 {"aliquot_tag": "ALQ_1f28cc0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.S20_L007_R1.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R1_001.fastq.gz 3788349906 FASTQ S20_L007_R1 submitted_unaligned CPTAC3 035da6f8-64e8-4bf8-9187-3830ed902225 aef1974004a771c7679a3f24a42b79ea {"aliquot_tag": "ALQ_eb8dc231", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.RNA-Seq.S20_L007_R2.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R2_001.fastq.gz 4223841174 FASTQ S20_L007_R2 submitted_unaligned CPTAC3 f8148ef7-a85c-4263-9ba0-7af1b18eac26 4f0dc3528d84fb38a72dc79ededd08eb {"aliquot_tag": "ALQ_eb8dc231", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.RNA-Seq.S25_R1.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R1_001.fastq.gz 7178642367 FASTQ S25_R1 submitted_unaligned CPTAC3 0173247e-5107-4bd1-a417-6bbdb214b1d0 5a737d097fe57194e27f615c152e6bb5 {"aliquot_tag": "ALQ_9b857381", "sample": "S25", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.S25_R2.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R2_001.fastq.gz 7436271333 FASTQ S25_R2 submitted_unaligned CPTAC3 d0fafdd0-190b-40cb-b63c-003d0c7b4e5e 79f766fa740dca9f93ec09884242b59d {"aliquot_tag": "ALQ_9b857381", "sample": "S25", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.transcriptome.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.transcriptome.gdc_realn.bam 10025389286 BAM transcriptome harmonized CPTAC3 d34d389b-7d5c-4125-a974-f1b512bd9005 b64cb6084850adc63adbdeb510722f52 {"aliquot_tag": "ALQ_eb8dc231", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.RNA-Seq.transcriptome.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.transcriptome.gdc_realn.bam 12815666421 BAM transcriptome harmonized CPTAC3 3d71438b-4972-495c-a81c-34b6327bc972 4aa78da2e79d5c7bcacf76a383e81b36 {"aliquot_tag": "ALQ_1f28cc0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.RNA-Seq.transcriptome.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.transcriptome.gdc_realn.bam 6690847312 BAM transcriptome harmonized CPTAC3 c96fb90f-7b64-42b5-ad50-573ae8c017c6 5ecbba0091e1e12c0cd2531428b37f20 {"aliquot_tag": "ALQ_9b857381", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.WGS.A C3L-02602 UCEC WGS tissue_normal CPT0113930006 CPT0113930006.WholeGenome.RP-1303.bam 58475680309 BAM submitted_aligned CPTAC3 05c80092-9097-4a6a-9e2f-d20578932873 73c8253c00240a5aa96ec7652eaeff6d {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.WGS.A.hg38 C3L-02602 UCEC WGS tissue_normal CPT0113930006 37643280-6285-466c-a679-13b543909986_wgs_gdc_realn.bam 84684115546 BAM harmonized CPTAC3 8f652206-3d1c-4837-baa8-03be64a04fe7 ef6dbf2b906b688db3bdd8d382298e85 {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.WGS.N C3L-02602 UCEC WGS blood_normal CPT0115300002 CPT0115300002.WholeGenome.RP-1303.bam 56569720415 BAM submitted_aligned CPTAC3 e1a00435-d255-490f-818b-686f133ce062 d66fc5f3bd989ef97377d7f478b983c9 {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02602.WGS.N.hg38 C3L-02602 UCEC WGS blood_normal CPT0115300002 a533de60-7921-47d7-82c1-bd2d9b73ef9c_wgs_gdc_realn.bam 82470368471 BAM harmonized CPTAC3 e391ccbd-1947-48b4-8658-60ef8411dad7 9d6234123ab7f6d14aa1f8e202f39990 {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02602.WGS.T C3L-02602 UCEC WGS tumor CPT0113910009 CPT0113910009.WholeGenome.RP-1303.bam 60424191853 BAM submitted_aligned CPTAC3 887d65dd-4c4c-420b-82cf-7535988d9033 b77dfe3506583bb156128e8bfa0c35ff {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.WGS.T.hg38 C3L-02602 UCEC WGS tumor CPT0113910009 a1142ae5-42db-4459-9da0-6c3058c66390_wgs_gdc_realn.bam 86619080112 BAM harmonized CPTAC3 62948b80-945c-4b63-9af1-faa3be23f973 4e1cb0b1e908dfece27450974dd7b2a1 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.WXS.A C3L-02602 UCEC WXS tissue_normal CPT0113930006 CPT0113930006.WholeExome.RP-1303.bam 18055133420 BAM submitted_aligned CPTAC3 a74bcd58-e1fa-4128-83a3-2ce09eb774e6 a85348614013abeeb3f31e80e1ab1cff {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.WXS.A.hg38 C3L-02602 UCEC WXS tissue_normal CPT0113930006 37643280-6285-466c-a679-13b543909986_wxs_gdc_realn.bam 25696904515 BAM harmonized CPTAC3 d4b235cb-5d3c-42e5-8653-cd0375f55945 c6dca2b1baff81459eca5dd75b150b13 {"aliquot_tag": "ALQ_7b32dfa0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02602.WXS.N C3L-02602 UCEC WXS blood_normal CPT0115300002 CPT0115300002.WholeExome.RP-1303.bam 29780154299 BAM submitted_aligned CPTAC3 9f07f623-2de1-4c20-9d9b-e3b33e11e4e0 e53727c93ee5fbc7dd6d80c65662705f {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02602.WXS.N.hg38 C3L-02602 UCEC WXS blood_normal CPT0115300002 a533de60-7921-47d7-82c1-bd2d9b73ef9c_wxs_gdc_realn.bam 40774684594 BAM harmonized CPTAC3 e1b53777-dea7-4a26-837e-a782d38ad947 4cd844d8f19c6e7af8b0d7e44418aabf {"aliquot_tag": "ALQ_f9b47735", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02602.WXS.T C3L-02602 UCEC WXS tumor CPT0113910009 CPT0113910009.WholeExome.RP-1303.bam 26462885517 BAM submitted_aligned CPTAC3 a05c82c1-78bb-4417-a1eb-e72b0e3e265e 9f739d46067ae42fdcac5839947f8ee1 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02602.WXS.T.hg38 C3L-02602 UCEC WXS tumor CPT0113910009 a1142ae5-42db-4459-9da0-6c3058c66390_wxs_gdc_realn.bam 36868069337 BAM harmonized CPTAC3 7940fc2b-0fb0-48c4-acb7-4cea5e165bd5 02cfd363415dfdc1b16add1a3713e137 {"aliquot_tag": "ALQ_914d9151", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02604.MethArray.Green.T C3L-02604 PDA Methylation_Array tumor CPT0161770007 203561620132_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 763f2b99-40f9-4a68-946c-f4c744e8b194 e7ac1eb0fbb0b9919e871d547c8f3f0c {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.MethArray.Red.T C3L-02604 PDA Methylation_Array tumor CPT0161770007 203561620132_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 d9e43f16-f2c2-48a1-b60c-fa4253b603b5 3c3cd770806bfd7fe1258565710ec6a2 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.miRNA-Seq.S14_L006_R1.T C3L-02604 PDA miRNA-Seq tumor CPT0161770010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTAGCT_S14_L006_R1_001.unaln.bam 233539113 BAM S14_L006_R1 submitted_unaligned CPTAC3 afd5c6e0-5e04-4b70-8908-65d8f9988e5b 15a7e4a469b3f6d0c610d5c4814f2c36 {"aliquot_tag": "ALQ_d99a9454", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.miRNA-Seq.T.hg38 C3L-02604 PDA miRNA-Seq tumor CPT0161770010 a0be44dd-7f14-43bc-ba05-806b82bece49_mirnaseq_gdc_realn.bam 261460697 BAM harmonized CPTAC3 bdb0fe01-f85d-4058-ab12-f9887b03cd07 dce1185e47fd58d383f39ec24b3a63f3 {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.RNA-Seq.chimeric.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.chimeric.gdc_realn.bam 43207533 BAM chimeric harmonized CPTAC3 7c14f489-2ba8-4f0e-8c0a-814037e22fe4 59c72a8aa0fe4de91730cdabed0beaec {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.RNA-Seq.genomic.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.genomic.gdc_realn.bam 11647966799 BAM genomic harmonized CPTAC3 e6bc2450-bf04-4546-9420-3c92bde38d36 75c96b74ade79c4d58f18875bd23a4d9 {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.RNA-Seq.S13_L004_R1.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R1_001.fastq.gz 4590116935 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 204bc201-be60-4cb9-bcee-debfff70a7c1 f9ce7c0e5d4ffd505e29d2907a97c932 {"aliquot_tag": "ALQ_d99a9454", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.RNA-Seq.S13_L004_R2.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R2_001.fastq.gz 5190498664 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 58337ccb-2919-4c42-9772-a0d4e90eeb49 3a7a5e6bf7ad9af2a2bdc1ffa1d8d4aa {"aliquot_tag": "ALQ_d99a9454", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.RNA-Seq.transcriptome.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.transcriptome.gdc_realn.bam 12186736495 BAM transcriptome harmonized CPTAC3 6b85707f-457e-4a91-8a03-b6f04f6f0b1c 2283af23db0ae6fa9bb3f57085953fcb {"aliquot_tag": "ALQ_d99a9454", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.Targeted.T C3L-02604 PDA Targeted_Sequencing tumor CPT0161770007 CPT0161770007.CustomSelection.RP-1303.PDO-18786.bam 5140603040 BAM submitted_aligned CPTAC3 1adeb86d-61f5-4ee0-be21-0ea6ba238fc8 ce7a1ff3ccb580a3cdf7905dfcd34fcf {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.Targeted.T.hg38 C3L-02604 PDA Targeted_Sequencing tumor CPT0161770007 1271bc97-9a0a-4153-90cb-a4eb8490761f_targetedsequencing_gdc_realn.bam 7115684385 BAM harmonized CPTAC3 9729ed42-7ea7-46c2-8194-e15fd9732283 8c3e4835526d2939c5e0bfbc3b194546 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.WGS.N C3L-02604 PDA WGS blood_normal CPT0162550002 CPT0162550002.WholeGenome.RP-1303.bam 57472863467 BAM submitted_aligned CPTAC3 43c05f30-fa31-44a7-a300-351f1f7d7115 6e373d0e06baad6c356a6208a1638bde {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02604.WGS.N.hg38 C3L-02604 PDA WGS blood_normal CPT0162550002 4cc2c3ab-2ccb-4ea9-b9b0-614e548fa19a_wgs_gdc_realn.bam 84280070118 BAM harmonized CPTAC3 3ea37c92-8b4e-412f-835e-f5927190bfd5 6a4d2349a8f7ff56edfaeed091abf6d7 {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02604.WGS.T C3L-02604 PDA WGS tumor CPT0161770007 CPT0161770007.WholeGenome.RP-1303.bam 97405520882 BAM submitted_aligned CPTAC3 9a1a77da-b295-43f2-bf44-aedc7d7f12fb e104946bc5fa2fbd8d1dc4bf874856e7 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.WGS.T.hg38 C3L-02604 PDA WGS tumor CPT0161770007 1271bc97-9a0a-4153-90cb-a4eb8490761f_wgs_gdc_realn.bam 138947904587 BAM harmonized CPTAC3 2dcf5112-827e-4169-8e26-67e02ff297e6 30faf24721da1ff433775966192445d1 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.WXS.N C3L-02604 PDA WXS blood_normal CPT0162550002 CPT0162550002.WholeExome.RP-1303.bam 24959257052 BAM submitted_aligned CPTAC3 024a6209-bdb1-4909-8953-98f379377a25 5bf46c8b857236f8d21c712e162c520f {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02604.WXS.N.hg38 C3L-02604 PDA WXS blood_normal CPT0162550002 4cc2c3ab-2ccb-4ea9-b9b0-614e548fa19a_wxs_gdc_realn.bam 34292993584 BAM harmonized CPTAC3 c6cce528-cf2e-4b13-8aac-0c86bf947b98 2f106e60ef0492347c5360bc08fc3126 {"aliquot_tag": "ALQ_286f2ccf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02604.WXS.T C3L-02604 PDA WXS tumor CPT0161770007 CPT0161770007.WholeExome.RP-1303.bam 50749842088 BAM submitted_aligned CPTAC3 4cf41607-d548-4a13-93e4-0eb7663f54d8 565abaa9dc5b08e7794fa451e4b6f300 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02604.WXS.T.hg38 C3L-02604 PDA WXS tumor CPT0161770007 1271bc97-9a0a-4153-90cb-a4eb8490761f_wxs_gdc_realn.bam 69700188574 BAM harmonized CPTAC3 cd085b77-973b-4687-8476-ab0725a57ba6 51e6424ded6b2fb7c6a7b9377b895320 {"aliquot_tag": "ALQ_5ee530b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.MethArray.Green.A C3L-02606 PDA Methylation_Array tissue_normal CPT0124530006 203561620012_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 964966e1-a38a-4e98-8492-2617fcc34f20 028dd989b9783b4e40511f75f5de9994 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.MethArray.Green.T C3L-02606 PDA Methylation_Array tumor CPT0124500006 203028200093_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 faeb084f-cdf6-43b6-8ef7-d19aa7b604d4 8fc49fc9593aec944c91f24935089d55 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.MethArray.Red.A C3L-02606 PDA Methylation_Array tissue_normal CPT0124530006 203561620012_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 0ee407d7-0ea9-420c-8833-8284131738b4 bf5a8b13b0c28651673681ad24f7bb31 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.MethArray.Red.T C3L-02606 PDA Methylation_Array tumor CPT0124500006 203028200093_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 8a3df311-f263-466a-8dda-220260fbaf80 0d58005fc09852635877557c66cf32fd {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.miRNA-Seq.A.hg38 C3L-02606 PDA miRNA-Seq tissue_normal CPT0124530009 192b8f8d-71df-4d64-be78-a4b754ac9624_mirnaseq_gdc_realn.bam 203648206 BAM harmonized CPTAC3 59ef9aff-c557-4ea3-8bfc-c99936de562d dcba009d99d18aabc772e876f0a1b835 {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.miRNA-Seq.S17_L001_R1.A C3L-02606 PDA miRNA-Seq tissue_normal CPT0124530009 181108_UNC31-K00269_0162_AH255GBBXY_GACGAC_S17_L001_R1_001.unaln.bam 184703806 BAM S17_L001_R1 submitted_unaligned CPTAC3 3bf81012-925a-4649-98ef-26723f3e0b9f 130de6b7af5e3cb0ab76f4e372c3eda9 {"aliquot_tag": "ALQ_d7673b27", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.miRNA-Seq.S36_L002_R1.T C3L-02606 PDA miRNA-Seq tumor CPT0124500010 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 312675867 BAM S36_L002_R1 submitted_unaligned CPTAC3 0744bebc-4c4d-4fa3-b67e-134c100d4823 030e3fae57fcc2b26e0b312ee8c048d1 {"aliquot_tag": "ALQ_f000c812", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.miRNA-Seq.T.hg38 C3L-02606 PDA miRNA-Seq tumor CPT0124500010 c9c6b80f-1112-4e47-9865-d0745d771ef5_mirnaseq_gdc_realn.bam 342715829 BAM harmonized CPTAC3 31d01e5a-fd6f-4b93-9ac2-ecc3ea954853 8eecd833e77b10b95c9a1e23b71b41d2 {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.RNA-Seq.chimeric.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.chimeric.gdc_realn.bam 42838463 BAM chimeric harmonized CPTAC3 ec4e2f09-d09f-4203-86cc-bab3cdaac9b6 a8f6bd7304ea51056fdce3c980be2fae {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.RNA-Seq.chimeric.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.chimeric.gdc_realn.bam 158877207 BAM chimeric harmonized CPTAC3 57873112-63a2-40d8-b35c-4e8d70b304cb 5ac8ec48444c880302f53a31400656a3 {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.RNA-Seq.genomic.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.genomic.gdc_realn.bam 10958566926 BAM genomic harmonized CPTAC3 8c26b9d8-b65a-48fb-a1a5-202964e62410 6155857e45489ee07afee3e5bcc67526 {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.RNA-Seq.genomic.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.genomic.gdc_realn.bam 7776690651 BAM genomic harmonized CPTAC3 268e0553-5c82-485c-9da7-fafebb1ba4cf 2d7ba1e223419f0f45922f4c21e16a80 {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.RNA-Seq.S15_L004_R1.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R1_001.fastq.gz 4128817461 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 a23673c8-562a-421e-b235-47642a82c5f2 d6fc070ba06d64f22aca93cbce6c37fc {"aliquot_tag": "ALQ_d7673b27", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.RNA-Seq.S15_L004_R2.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R2_001.fastq.gz 4686627777 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 8f6a4f28-bf7e-4b44-8627-170a453a7c29 26a5d4e5a1cf29ea62a1eed74f8e96d7 {"aliquot_tag": "ALQ_d7673b27", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.RNA-Seq.S8_L002_R1.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R1_001.fastq.gz 3523165616 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 5c886d75-3eda-4164-bbde-589182b17c58 774dfed5065c21db6a2026a5a47afa4e {"aliquot_tag": "ALQ_f000c812", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.RNA-Seq.S8_L002_R2.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R2_001.fastq.gz 3811079079 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 090a41ea-c68c-4947-891f-2dcc24b73a29 cb429705c1a31614f096130084e3ab12 {"aliquot_tag": "ALQ_f000c812", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.RNA-Seq.transcriptome.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.transcriptome.gdc_realn.bam 11070014819 BAM transcriptome harmonized CPTAC3 355ef197-ad6b-43b5-b8e9-0cf3aacb6256 d77816a1a3c50a19688f627e23836cf8 {"aliquot_tag": "ALQ_d7673b27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.RNA-Seq.transcriptome.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.transcriptome.gdc_realn.bam 9439698772 BAM transcriptome harmonized CPTAC3 88af3d80-b14e-42db-963a-02cf59c08598 1f97c183248e3266b557b2ffed51fdaf {"aliquot_tag": "ALQ_f000c812", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.WGS.A C3L-02606 PDA WGS tissue_normal CPT0124530006 CPT0124530006.WholeGenome.RP-1303.bam 63974015393 BAM submitted_aligned CPTAC3 f0c4d75f-9f22-4739-8b5d-100deb5bc275 e0df584ff959f71a270bdbc550d25c26 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.WGS.A.hg38 C3L-02606 PDA WGS tissue_normal CPT0124530006 df7009c7-71a8-405d-b9fe-fbee51e44f43_wgs_gdc_realn.bam 92880510841 BAM harmonized CPTAC3 415a5e48-511d-403f-a43a-b1d7166249e1 97d5741b167150665f20ef4387666972 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.WGS.N C3L-02606 PDA WGS blood_normal CPT0124540002 CPT0124540002.WholeGenome.RP-1303.bam 61877250451 BAM submitted_aligned CPTAC3 645e3bb2-4566-4cda-987a-af58e7087825 9f6ddb4e7fd5be72893da9d08ddad60c {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02606.WGS.N.hg38 C3L-02606 PDA WGS blood_normal CPT0124540002 eb5ad77e-ab33-42a2-8526-9d0977b9c4e5_wgs_gdc_realn.bam 90437550932 BAM harmonized CPTAC3 fdc30e48-1bb7-4ca9-abbb-278a8736d327 cf2a2c820f4f08544c0c13b0e2371bb7 {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02606.WGS.T C3L-02606 PDA WGS tumor CPT0124500006 CPT0124500006.WholeGenome.RP-1303.bam 73414235444 BAM submitted_aligned CPTAC3 8dacc095-6d37-43ee-8094-3279fd2e0b43 ad247fb7adda55480df891c030f04ba6 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.WGS.T.hg38 C3L-02606 PDA WGS tumor CPT0124500006 204fcb46-d792-4b61-92ab-9650ca2ee9d3_wgs_gdc_realn.bam 109131748941 BAM harmonized CPTAC3 1bc496dd-efd0-476c-b582-1b4b2176c948 b204cc243be809ad515027af4baeaf0d {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.WXS.A C3L-02606 PDA WXS tissue_normal CPT0124530006 CPT0124530006.WholeExome.RP-1303.bam 33223050952 BAM submitted_aligned CPTAC3 04fe228d-d8b6-474d-a353-59b585be8e75 6a05fca9e63d28a4b12cd08d51813f15 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.WXS.A.hg38 C3L-02606 PDA WXS tissue_normal CPT0124530006 df7009c7-71a8-405d-b9fe-fbee51e44f43_wxs_gdc_realn.bam 47062705244 BAM harmonized CPTAC3 732f993e-c356-4977-ab17-ec4f03a04274 e18251e0b50351c76cf58fdd8e1a2d56 {"aliquot_tag": "ALQ_47d826b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02606.WXS.N C3L-02606 PDA WXS blood_normal CPT0124540002 CPT0124540002.WholeExome.RP-1303.bam 30074299045 BAM submitted_aligned CPTAC3 1ec96cde-0b4a-4f1a-8878-d4b76ca63f9b 7ed9a547370fcb393aba7714592daaf2 {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02606.WXS.N.hg38 C3L-02606 PDA WXS blood_normal CPT0124540002 eb5ad77e-ab33-42a2-8526-9d0977b9c4e5_wxs_gdc_realn.bam 40082927074 BAM harmonized CPTAC3 afe3616b-0a2a-4ee2-b086-0ad1c52a2eb0 f822bca48c3d6d36681f6796e03a1592 {"aliquot_tag": "ALQ_f2953ebf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02606.WXS.T C3L-02606 PDA WXS tumor CPT0124500006_1 CPT0124500006_1.WholeExome.RP-1303.bam 61486150317 BAM submitted_aligned CPTAC3 2ec18559-88f3-4e2d-af04-0d75e3e9c545 c1b0dbf0fa0edd0a2f8f7ce04ed601a6 {"aliquot_tag": "ALQ_7c5e82d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.WXS.T C3L-02606 PDA WXS tumor CPT0124500006 CPT0124500006.WholeExome.RP-1303.bam 33271514488 BAM submitted_aligned CPTAC3 e9685e18-0758-46cc-81d6-6b2d60ef958f d43f57d60683914508143e7e12dba412 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.WXS.T.hg38 C3L-02606 PDA WXS tumor CPT0124500006_1 614514be-35d7-40aa-923c-9d7f560c6f21_wxs_gdc_realn.bam 83560686243 BAM harmonized CPTAC3 28ba1938-a8f8-4f18-a49c-90fce6ee9965 2804b1d7d96810f9359f9750eb4a9d82 {"aliquot_tag": "ALQ_7c5e82d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02606.WXS.T.hg38 C3L-02606 PDA WXS tumor CPT0124500006 204fcb46-d792-4b61-92ab-9650ca2ee9d3_wxs_gdc_realn.bam 44679582880 BAM harmonized CPTAC3 fba85257-aae5-487f-aa27-fccbc9dce9d0 2e0aae0d11aec94d5b0bcb033b0fea07 {"aliquot_tag": "ALQ_785c66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.MethArray.Green.A C3L-02610 PDA Methylation_Array tissue_normal CPT0125010006 203561450068_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 68ecffe3-cf1b-4b5a-a8f5-06bda3996c74 9f501667914308dc0868945250fa16fd {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.MethArray.Green.T C3L-02610 PDA Methylation_Array tumor CPT0124980007 203028200104_R02C01_Grn.idat 13676238 IDAT Green NA CPTAC3 a53642d2-b232-4d2a-abc7-859cd92dd32d 59cf41195edae2be9af87ecc727b5bb3 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.MethArray.Red.A C3L-02610 PDA Methylation_Array tissue_normal CPT0125010006 203561450068_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 008abcfc-4a31-4090-b342-78914e27b985 28db9105d4294e3f9bc91bf73cc11cbf {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.MethArray.Red.T C3L-02610 PDA Methylation_Array tumor CPT0124980007 203028200104_R02C01_Red.idat 13676238 IDAT Red NA CPTAC3 2ed088ce-77da-4f12-a994-34831dbaf1ba ceff818866d0128e972d88b197b098fe {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.miRNA-Seq.A.hg38 C3L-02610 PDA miRNA-Seq tissue_normal CPT0125010009 79304fdd-90e8-4ca3-a8be-8e0678db0863_mirnaseq_gdc_realn.bam 189847727 BAM harmonized CPTAC3 f634cd95-3a0e-4a80-8c34-183229a10668 9d63d64864527feb0ce5956212620563 {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.miRNA-Seq.S19_L001_R1.A C3L-02610 PDA miRNA-Seq tissue_normal CPT0125010009 181108_UNC31-K00269_0162_AH255GBBXY_TACAGC_S19_L001_R1_001.unaln.bam 171374498 BAM S19_L001_R1 submitted_unaligned CPTAC3 f7a759cf-97b2-4ec8-9524-a93abcf6ca70 ce48273daf1c05a28dd8accd1e7930cf {"aliquot_tag": "ALQ_5b1df240", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.miRNA-Seq.S38_L002_R1.T C3L-02610 PDA miRNA-Seq tumor CPT0124980010 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 262196368 BAM S38_L002_R1 submitted_unaligned CPTAC3 54d22624-96fc-4244-b572-c59ca63a47a6 fd615a40a0358a0f129c03dbaaaf41c2 {"aliquot_tag": "ALQ_b7b243a8", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.miRNA-Seq.T.hg38 C3L-02610 PDA miRNA-Seq tumor CPT0124980010 77484bbd-aa98-4334-a708-c65f0033c11d_mirnaseq_gdc_realn.bam 292226022 BAM harmonized CPTAC3 385c13cf-963b-4c2d-a662-0f3e9ca243ca 6e067b89d6615df8707cbd88f44e911b {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.RNA-Seq.chimeric.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.chimeric.gdc_realn.bam 61416456 BAM chimeric harmonized CPTAC3 369e64b6-dc4a-4ab6-b85a-f9a2b0749d3a 240b480e08ae87d1bbcf11e431e45e54 {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.RNA-Seq.chimeric.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.chimeric.gdc_realn.bam 107268717 BAM chimeric harmonized CPTAC3 6bbb725b-a652-4301-b3e7-8d30d4fc0c3e da5657381dc527270b317b2623b59520 {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.RNA-Seq.genomic.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.genomic.gdc_realn.bam 10959148907 BAM genomic harmonized CPTAC3 d2be85f4-03a2-42c9-95a7-afcd229d9ddf cb9c1e77c5c3f0c52e7acd68fe79a6a5 {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.RNA-Seq.genomic.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.genomic.gdc_realn.bam 7449704292 BAM genomic harmonized CPTAC3 5ad49cd2-dc95-4e46-8c32-50ff7ec2d61e 2d3a42226dbbd61c54549f5c7e1db5d8 {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.RNA-Seq.S14_L004_R1.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R1_001.fastq.gz 3958657777 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 d888a4c7-71dc-4b3c-80d4-53e83ec6374a 4ef3533f16cd22c7c256dcbfa7447e20 {"aliquot_tag": "ALQ_5b1df240", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.RNA-Seq.S14_L004_R2.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R2_001.fastq.gz 4420071584 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 937e7f27-44e7-4288-9723-95c10f841789 62fba495822bc94743c72637056e4321 {"aliquot_tag": "ALQ_5b1df240", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.RNA-Seq.S3_L001_R1.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3419241932 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 fd11aa88-b072-423d-8983-f59a2275eeae dcb4aaa93ff28eb7bdf8af20afeaad91 {"aliquot_tag": "ALQ_b7b243a8", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.RNA-Seq.S3_L001_R2.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 3676479320 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 c9d906a9-491e-4e3b-90a6-d3c466b8cc1e 3c27cb8cb6f0f0a7ebf5f73f33c664fa {"aliquot_tag": "ALQ_b7b243a8", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.RNA-Seq.transcriptome.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.transcriptome.gdc_realn.bam 10834598909 BAM transcriptome harmonized CPTAC3 57d38093-d775-473f-9682-4bd07b96b2e3 65f242299a41353d0ff31e514ab30bbd {"aliquot_tag": "ALQ_5b1df240", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.RNA-Seq.transcriptome.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.transcriptome.gdc_realn.bam 9900369175 BAM transcriptome harmonized CPTAC3 086d1152-f9f2-498e-956d-cf11dd793153 42845f3646bb777a8f016ac721fc5ac5 {"aliquot_tag": "ALQ_b7b243a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.WGS.A C3L-02610 PDA WGS tissue_normal CPT0125010006 CPT0125010006.WholeGenome.RP-1303.bam 67222301816 BAM submitted_aligned CPTAC3 b45a506a-24e3-4794-8e00-a2ae50e073e3 fc37f03d74caa2d5720b31c026566ad0 {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.WGS.A.hg38 C3L-02610 PDA WGS tissue_normal CPT0125010006 87b5c90c-3fa7-4f0e-bd93-94faaf30ad69_wgs_gdc_realn.bam 97109911504 BAM harmonized CPTAC3 2855f59a-5e69-4993-b66a-4035a5a1b490 42eaf9586ae0d33ae1c3f740421a94be {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.WGS.N C3L-02610 PDA WGS blood_normal CPT0125020002 CPT0125020002.WholeGenome.RP-1303.bam 54103804942 BAM submitted_aligned CPTAC3 b644be10-bd4d-448c-b990-ac8301cb3fc8 87195094daa7f80179ea64a95b997d29 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02610.WGS.N.hg38 C3L-02610 PDA WGS blood_normal CPT0125020002 3d43384f-69ee-4acd-8530-1e3dd032f2ce_wgs_gdc_realn.bam 79718041622 BAM harmonized CPTAC3 f9a3cc94-ab41-4d40-a283-58495f124c1f f4692096592b94f4e496359095474da4 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02610.WGS.T C3L-02610 PDA WGS tumor CPT0124980007 CPT0124980007.WholeGenome.RP-1303.bam 63747011989 BAM submitted_aligned CPTAC3 530ac696-35ab-4352-810d-f692ebc98d15 f5c04104169e69b6b64092e30872f557 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.WGS.T.hg38 C3L-02610 PDA WGS tumor CPT0124980007 e8d1c4ee-7bd2-4984-968a-382777d990de_wgs_gdc_realn.bam 93317031707 BAM harmonized CPTAC3 25d168e6-e000-4132-952d-84355fa8097f 89c70c1ae8850f6d933e8605b45c9eb3 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.WXS.A C3L-02610 PDA WXS tissue_normal CPT0125010006 CPT0125010006.WholeExome.RP-1303.bam 28372501622 BAM submitted_aligned CPTAC3 abbe6277-a575-4176-824f-086122e64c56 66b575eb532045733a67d9ac1480728c {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.WXS.A.hg38 C3L-02610 PDA WXS tissue_normal CPT0125010006 87b5c90c-3fa7-4f0e-bd93-94faaf30ad69_wxs_gdc_realn.bam 39596894877 BAM harmonized CPTAC3 5b547da5-d5f6-4c60-8d0f-66126dc89ceb 2c597bf02e60cd7fc534762a1cddf19a {"aliquot_tag": "ALQ_cba2efd1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02610.WXS.N C3L-02610 PDA WXS blood_normal CPT0125020002 CPT0125020002.WholeExome.RP-1303.bam 29947906728 BAM submitted_aligned CPTAC3 797b4aa1-4caf-427c-9a4d-bc772024cfd1 336bc01d57e4172f8fd9269b2e2115e2 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02610.WXS.N.hg38 C3L-02610 PDA WXS blood_normal CPT0125020002 3d43384f-69ee-4acd-8530-1e3dd032f2ce_wxs_gdc_realn.bam 40165961588 BAM harmonized CPTAC3 cb627c7d-0371-41ea-a1ed-0688d7ed1ab7 1c1813ec9dca9ed9e9b14b2735fb1845 {"aliquot_tag": "ALQ_8b6f5118", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02610.WXS.T C3L-02610 PDA WXS tumor CPT0124980007_1 CPT0124980007_1.WholeExome.RP-1303.bam 44573679634 BAM submitted_aligned CPTAC3 6a0548b4-ac35-493e-8a21-6de91e42f569 e682e803bddd867a9f731817a774f23f {"aliquot_tag": "ALQ_19dcb3c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.WXS.T C3L-02610 PDA WXS tumor CPT0124980007 CPT0124980007.WholeExome.RP-1303.bam 26608854274 BAM submitted_aligned CPTAC3 e71161ef-4d2e-4dcf-af50-11e9f86ec278 30e9a74ede67132c3fdeabcf899718f8 {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.WXS.T.hg38 C3L-02610 PDA WXS tumor CPT0124980007_1 8cd32acc-677e-4115-9303-92118b5dce5b_wxs_gdc_realn.bam 60660534292 BAM harmonized CPTAC3 aaf1f3a3-17ba-49f4-8322-803ff1f4844d 7a8031b9a0d2a8dafbab6ac9ab80a153 {"aliquot_tag": "ALQ_19dcb3c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02610.WXS.T.hg38 C3L-02610 PDA WXS tumor CPT0124980007 e8d1c4ee-7bd2-4984-968a-382777d990de_wxs_gdc_realn.bam 35604883400 BAM harmonized CPTAC3 6eae0a69-3a85-47e5-85bc-36349cbbf8f8 31ce18bac2562563252e39c73e129ceb {"aliquot_tag": "ALQ_30cde74a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.MethArray.Green.A C3L-02613 PDA Methylation_Array tissue_normal CPT0124630006 203561450084_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 228b4f8a-b417-496a-abac-2361c6c44171 afebb3b5f6f58a6072b40aca106de346 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.MethArray.Green.T C3L-02613 PDA Methylation_Array tumor CPT0124610007 203027390078_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4862c146-9e92-4c77-a214-5a389a681686 7d4362a7a7d201731567369364aab8ec {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.MethArray.Red.A C3L-02613 PDA Methylation_Array tissue_normal CPT0124630006 203561450084_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 d76a8b09-c68f-422c-a651-2e3538511583 7f17f22712d82176a5e4c33903ad91a9 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.MethArray.Red.T C3L-02613 PDA Methylation_Array tumor CPT0124610007 203027390078_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 7859b2bd-0c92-4e7d-b8dc-775146862600 4ebe063229aebc24e55cb4ea02ccca9c {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.miRNA-Seq.A.hg38 C3L-02613 PDA miRNA-Seq tissue_normal CPT0124630009 a77b73a5-927a-4f15-b6b7-5e443236873d_mirnaseq_gdc_realn.bam 199590653 BAM harmonized CPTAC3 58f6a181-29dd-4520-b1d1-f8991b5d5d4a fdcf2d6ab59d0ef2d69604ce8f3cc9fe {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.miRNA-Seq.S18_L001_R1.A C3L-02613 PDA miRNA-Seq tissue_normal CPT0124630009 181108_UNC31-K00269_0162_AH255GBBXY_TAATCG_S18_L001_R1_001.unaln.bam 182406619 BAM S18_L001_R1 submitted_unaligned CPTAC3 8d2becfb-7fea-4850-8fe5-979ab915e3f1 8900285277418dd2c37ff41e815a1332 {"aliquot_tag": "ALQ_51f34989", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.miRNA-Seq.S37_L002_R1.T C3L-02613 PDA miRNA-Seq tumor CPT0124610010 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 206711433 BAM S37_L002_R1 submitted_unaligned CPTAC3 4719334a-8d99-4da5-ab31-e40a8d4b64e6 6436e4e4306a2d9db263f5b81cc217ff {"aliquot_tag": "ALQ_4bf4930c", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.miRNA-Seq.T.hg38 C3L-02613 PDA miRNA-Seq tumor CPT0124610010 f436c597-6ce0-4729-9d79-6acec46961ea_mirnaseq_gdc_realn.bam 229044470 BAM harmonized CPTAC3 e672995e-8358-406d-abfc-ad4fa3a94430 dd364399ecd3dd018644d163efc3417f {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.RNA-Seq.chimeric.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.chimeric.gdc_realn.bam 107323475 BAM chimeric harmonized CPTAC3 e42e57ec-a4ac-4570-9f9f-d166f170fac9 b5a9489a988f16a817418b81f95d0704 {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.RNA-Seq.chimeric.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.chimeric.gdc_realn.bam 111675215 BAM chimeric harmonized CPTAC3 eec3cb09-e57d-430e-b7df-9fcdace0cfaa 891029c4e6e2e6b9b79fc6659734da60 {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.RNA-Seq.genomic.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.genomic.gdc_realn.bam 7296145201 BAM genomic harmonized CPTAC3 8d46ee65-07dc-46a4-b2fb-708cd43b13f3 f9a57cdbd936d2f3aa5969eaf6b39eb6 {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.RNA-Seq.genomic.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.genomic.gdc_realn.bam 8129087461 BAM genomic harmonized CPTAC3 4559b989-2d4d-4128-8df4-1cd482d3be7f d57ce5a9f73dad7c0cde20a9604c3119 {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.RNA-Seq.S20_L005_R1.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R1_001.fastq.gz 3209811527 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 bb6960c6-9c3e-4b5f-97c3-e7da6872ca28 0cdcfe5956621e9aeecc674388e9d6d3 {"aliquot_tag": "ALQ_51f34989", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.RNA-Seq.S20_L005_R2.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R2_001.fastq.gz 3360168099 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 8a57f7a7-b6a5-4ca1-86b9-090b05360391 05eecacfe16081d21b2de8ec7d3ae853 {"aliquot_tag": "ALQ_51f34989", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.RNA-Seq.S7_L002_R1.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R1_001.fastq.gz 3645297278 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 44bba21e-a3f3-4772-bcc9-fab3b5382c16 3b91039a78fa729d1b1304387c6e9c56 {"aliquot_tag": "ALQ_4bf4930c", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.RNA-Seq.S7_L002_R2.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R2_001.fastq.gz 3949826814 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 a744f47c-65a7-4686-ad73-10ccea4cb64e 4f2b32fe912e1e95fbd4db77d8747283 {"aliquot_tag": "ALQ_4bf4930c", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.RNA-Seq.transcriptome.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.transcriptome.gdc_realn.bam 7566325578 BAM transcriptome harmonized CPTAC3 5e47f0a6-b397-4194-855d-e1069f415991 9d5cb5d412fcce3bb3bb612c6f30a017 {"aliquot_tag": "ALQ_51f34989", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.RNA-Seq.transcriptome.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.transcriptome.gdc_realn.bam 10526868431 BAM transcriptome harmonized CPTAC3 e1059701-a759-4a0a-b922-e9e726a67e76 cc67e97c59cdf1121718afe3af75ae47 {"aliquot_tag": "ALQ_4bf4930c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.Targeted.T C3L-02613 PDA Targeted_Sequencing tumor CPT0124610007_1 CPT0124610007_1.CustomSelection.RP-1303.PDO-18786.bam 4885072832 BAM submitted_aligned CPTAC3 b5bb87f9-6ce9-46e8-84b2-8e8938c5d016 19ac60d3bba7e61888ab0480f321104b {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.Targeted.T.hg38 C3L-02613 PDA Targeted_Sequencing tumor CPT0124610007_1 db70cb1d-4e2d-4341-98d3-4aea5e5ea3ca_targetedsequencing_gdc_realn.bam 6839915476 BAM harmonized CPTAC3 e780a93c-3a21-40fa-805b-491dc5671039 851025d87f1da38583efe6729db3848c {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.WGS.A C3L-02613 PDA WGS tissue_normal CPT0124630006 CPT0124630006.WholeGenome.RP-1303.bam 64816166932 BAM submitted_aligned CPTAC3 7949aa71-fce0-4c45-b095-fd9617f43e49 671273e42f67ef82a427cafa00cffebe {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.WGS.A.hg38 C3L-02613 PDA WGS tissue_normal CPT0124630006 aa5a4e26-7ca9-40ae-80f6-160ce81ccfb9_wgs_gdc_realn.bam 95577480709 BAM harmonized CPTAC3 ca35f1d6-4675-450a-8b9f-ffe34e3fd0ce 5ab78c9e24b12c8b6811889f60dd00d0 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.WGS.N C3L-02613 PDA WGS blood_normal CPT0124640002 CPT0124640002.WholeGenome.RP-1303.bam 55360098979 BAM submitted_aligned CPTAC3 001a03bf-f435-490b-a4a4-27e77d43d971 e10a4799c042d63322847a661dea7f77 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02613.WGS.N.hg38 C3L-02613 PDA WGS blood_normal CPT0124640002 9cffca81-d449-409f-9328-f0b0d9772f82_wgs_gdc_realn.bam 80134401768 BAM harmonized CPTAC3 b79d67fd-6c4c-424f-86cb-5c6f99fd945f ce42099cb442ed75a4f9defc489814f7 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02613.WGS.T C3L-02613 PDA WGS tumor CPT0124610007 CPT0124610007.WholeGenome.RP-1303.bam 58884243399 BAM submitted_aligned CPTAC3 bcac4b48-1845-4a17-aa4a-14f70847b06b 77eef53c4d9cdf2446a01d06454546eb {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.WGS.T.hg38 C3L-02613 PDA WGS tumor CPT0124610007 77d62c85-36de-4df8-869f-e652588bcf8a_wgs_gdc_realn.bam 86571982162 BAM harmonized CPTAC3 77b46516-9f34-481d-a1a9-1a96def77fd8 59b127634033c465e0391036b838d914 {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.WXS.A C3L-02613 PDA WXS tissue_normal CPT0124630006 CPT0124630006.WholeExome.RP-1303.bam 26137475138 BAM submitted_aligned CPTAC3 82d9a78e-8649-443f-b1ec-ee6dbaddfde1 e2b3a07975e66e5cd4696d86259f5879 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.WXS.A.hg38 C3L-02613 PDA WXS tissue_normal CPT0124630006 aa5a4e26-7ca9-40ae-80f6-160ce81ccfb9_wxs_gdc_realn.bam 35565384618 BAM harmonized CPTAC3 d32c1f68-c577-4300-9c53-7f76a6ed6112 11a04a7cb28591360220a0acab00b243 {"aliquot_tag": "ALQ_c14c5418", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02613.WXS.N C3L-02613 PDA WXS blood_normal CPT0124640002 CPT0124640002.WholeExome.RP-1303.bam 24596603760 BAM submitted_aligned CPTAC3 79a29255-7f31-45d9-bd65-f52f5bbaba87 39be73eb9db110d5ca3f42642d2366e7 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02613.WXS.N.hg38 C3L-02613 PDA WXS blood_normal CPT0124640002 9cffca81-d449-409f-9328-f0b0d9772f82_wxs_gdc_realn.bam 33003220390 BAM harmonized CPTAC3 67441851-d1cb-40d0-aad2-bd52024f41fb 1bb80b951ad04b3596bc6b3ba2d8d0a4 {"aliquot_tag": "ALQ_74014c11", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02613.WXS.T C3L-02613 PDA WXS tumor CPT0124610007_1 CPT0124610007_1.WholeExome.RP-1303.bam 61317612855 BAM submitted_aligned CPTAC3 2cd31d82-8288-430a-be3f-6fa1e7e0fe25 fc21b16c4712b486e793f650393923a0 {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.WXS.T C3L-02613 PDA WXS tumor CPT0124610007 CPT0124610007.WholeExome.RP-1303.bam 28889722767 BAM submitted_aligned CPTAC3 48ec5acd-a7f0-4c67-8a26-e72663be71f1 3277a2228a8562e63c8ce724f65fc026 {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.WXS.T.hg38 C3L-02613 PDA WXS tumor CPT0124610007_1 db70cb1d-4e2d-4341-98d3-4aea5e5ea3ca_wxs_gdc_realn.bam 83419348043 BAM harmonized CPTAC3 715898e2-7575-4a70-8b17-60d4e123d99c 506786c9172edaad3da89cea514f6c75 {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02613.WXS.T.hg38 C3L-02613 PDA WXS tumor CPT0124610007 77d62c85-36de-4df8-869f-e652588bcf8a_wxs_gdc_realn.bam 38712293216 BAM harmonized CPTAC3 4e26c6a2-f913-410a-9f9e-afb274c0d487 72531e47a34f77794f8b495ba31ebe0a {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.MethArray.Green.A C3L-02616 LUAD Methylation_Array tissue_normal CPT0192250006 203219650136_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f8a09345-9367-4afc-a614-35a6cbaa56db ded388a7d659aaf297d0a5f5f03e57cd {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.MethArray.Green.T C3L-02616 LUAD Methylation_Array tumor CPT0192240006 203219720211_R04C01_Grn.idat 13676245 IDAT Green NA CPTAC3 65abfd21-97b4-4c01-9503-00df09c9eedc 6975f38ca3b1986b1abae6b1f018f7f3 {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.MethArray.Red.A C3L-02616 LUAD Methylation_Array tissue_normal CPT0192250006 203219650136_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 1d3e1816-32a3-46ea-8960-dc69b204aa48 bdbb6c97932fb7e15c630e89a417e626 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.MethArray.Red.T C3L-02616 LUAD Methylation_Array tumor CPT0192240006 203219720211_R04C01_Red.idat 13676245 IDAT Red NA CPTAC3 e662c664-eaa3-4e34-a005-2ceedce118b0 468849ea3016dbec07eadd88202c69a6 {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.miRNA-Seq.A.hg38 C3L-02616 LUAD miRNA-Seq tissue_normal CPT0192250009 53437b33-121f-44f4-bca0-1b0213f2c3cb_mirnaseq_gdc_realn.bam 248769526 BAM harmonized CPTAC3 bd0ceb50-310a-4275-afa8-d955694568fc 0a6b4daf331c47b6255720ebfef7afd1 {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.miRNA-Seq.S12_L006_R1.A C3L-02616 LUAD miRNA-Seq tissue_normal CPT0192250009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L006_R1_001.unaln.bam 226766378 BAM S12_L006_R1 submitted_unaligned CPTAC3 abfc28ef-6c20-4f57-bc48-76a73156fe4b 4cd596ebbb0aaf061d6dad7cded91adc {"aliquot_tag": "ALQ_7b98d753", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.miRNA-Seq.S25_L006_R1.T C3L-02616 LUAD miRNA-Seq tumor CPT0192240009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L006_R1_001.unaln.bam 264893562 BAM S25_L006_R1 submitted_unaligned CPTAC3 ea1da1c2-b67d-45b1-a287-30474cf038d3 389300b15eabcc37151b5c85b223cff5 {"aliquot_tag": "ALQ_46f8fee3", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.miRNA-Seq.T.hg38 C3L-02616 LUAD miRNA-Seq tumor CPT0192240009 1393ccbb-a44c-4b45-9947-8eba032c2f94_mirnaseq_gdc_realn.bam 291575209 BAM harmonized CPTAC3 cc713805-3e87-4026-9da6-59e775cd37d0 29cd465b1088bd5441afc794db4394f2 {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.RNA-Seq.chimeric.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.chimeric.gdc_realn.bam 57721606 BAM chimeric harmonized CPTAC3 e9447a83-823b-4043-9270-a5efab294fe5 4d416857b6a09144793f685e3e398daf {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.RNA-Seq.chimeric.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.chimeric.gdc_realn.bam 53889980 BAM chimeric harmonized CPTAC3 5f25fdc9-18b2-44b0-819c-1059fa34a156 fc656bf08ee74457efe45403702ee1bf {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.RNA-Seq.genomic.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.genomic.gdc_realn.bam 10377179169 BAM genomic harmonized CPTAC3 b3305a05-f039-4c42-8bb0-d2b499812079 499b485910354039e0dd367850170af8 {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.RNA-Seq.genomic.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.genomic.gdc_realn.bam 8853614453 BAM genomic harmonized CPTAC3 bbf1a412-ea24-4db4-b5e7-69294bad52e8 220444d2e6df3f132ee24082c0ccec59 {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.RNA-Seq.S14_L004_R1.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R1_001.fastq.gz 4315349982 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 5ff069db-1f4c-4774-81ee-f309d4328132 0bd084a6b98e82114b3abe8dd4d0968f {"aliquot_tag": "ALQ_7b98d753", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.RNA-Seq.S14_L004_R2.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R2_001.fastq.gz 4928543111 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 60c4b618-17e4-4a7c-9e22-7c0edf40e5bb 4297e2a84c4864023f4d2c00d65ea7f6 {"aliquot_tag": "ALQ_7b98d753", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.RNA-Seq.S2_L007_R1.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R1_001.fastq.gz 3893162484 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 758d490d-5c7c-4fa6-92db-a0b0bc819c2e 075643cdbb10a991c5cf9df25747d228 {"aliquot_tag": "ALQ_46f8fee3", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.RNA-Seq.S2_L007_R2.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R2_001.fastq.gz 4309850934 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 8b618071-ac4c-4cdc-bf3a-a0b73b51f015 1a1ecf90b6590d963064b80dcc4ec4ff {"aliquot_tag": "ALQ_46f8fee3", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.RNA-Seq.transcriptome.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.transcriptome.gdc_realn.bam 10287986112 BAM transcriptome harmonized CPTAC3 2370031e-9743-497a-92a4-960008c90e76 0e0542116caecee50d543e524d6a865a {"aliquot_tag": "ALQ_7b98d753", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.RNA-Seq.transcriptome.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.transcriptome.gdc_realn.bam 8810373220 BAM transcriptome harmonized CPTAC3 68754766-3722-4208-9577-21d5b5be128b 85ee03c4184a966b576d82c59f9aa89b {"aliquot_tag": "ALQ_46f8fee3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.WGS.A C3L-02616 LUAD WGS tissue_normal CPT0192250006 CPT0192250006.WholeGenome.RP-1303.bam 60991733141 BAM submitted_aligned CPTAC3 12d0356a-84e9-466d-9a5d-5efbd4426a2e 41c3c7519700cfb9b17ad602ec979890 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.WGS.A.hg38 C3L-02616 LUAD WGS tissue_normal CPT0192250006 adc4dbaf-8bc8-4ac1-8fb7-08df357230ac_wgs_gdc_realn.bam 88428013936 BAM harmonized CPTAC3 b089301c-670f-45c7-9f97-459dd827a31b e5f35d2045bcb36a456902413befa162 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.WGS.N C3L-02616 LUAD WGS blood_normal CPT0192360002 CPT0192360002.WholeGenome.RP-1303.bam 54591548332 BAM submitted_aligned CPTAC3 7a57e165-b37d-4860-a36e-e44b0e967c4e 77168024548300379f5f32826837c705 {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02616.WGS.N.hg38 C3L-02616 LUAD WGS blood_normal CPT0192360002 d2a915e5-6de2-452f-a014-29804e731a73_wgs_gdc_realn.bam 78931863401 BAM harmonized CPTAC3 96412ed7-70aa-46db-8963-2b78a6a43b67 e095f0804af63e689b796868cea8b66d {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02616.WGS.T C3L-02616 LUAD WGS tumor CPT0192240006 CPT0192240006.WholeGenome.RP-1303.bam 70332323868 BAM submitted_aligned CPTAC3 ba898483-16cc-4851-b2e0-a79bd2c67c27 0cf2570212b96678a48de833c3da157e {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.WGS.T.hg38 C3L-02616 LUAD WGS tumor CPT0192240006 5168a152-2084-4c61-ab12-1602325fe82e_wgs_gdc_realn.bam 102564563633 BAM harmonized CPTAC3 8105969b-3a9c-4779-ac5f-ef9d22860c99 58c23e405fbcbb3a2d066ee722aa4a8c {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.WXS.A C3L-02616 LUAD WXS tissue_normal CPT0192250006 CPT0192250006.WholeExome.RP-1303.bam 24210881190 BAM submitted_aligned CPTAC3 4c8681c4-b57b-413a-9707-62ca2ba9cc68 d97c9ed3f1c7d95c79eceba403e10a00 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.WXS.A.hg38 C3L-02616 LUAD WXS tissue_normal CPT0192250006 adc4dbaf-8bc8-4ac1-8fb7-08df357230ac_wxs_gdc_realn.bam 33485388508 BAM harmonized CPTAC3 46fa98fb-f15b-43c2-838e-5763579aadab 4df058bfd213c1eefa7f3751b1d95813 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02616.WXS.N C3L-02616 LUAD WXS blood_normal CPT0192360002 CPT0192360002.WholeExome.RP-1303.bam 29193588974 BAM submitted_aligned CPTAC3 efcfe89f-05ea-4bd3-953f-631072cd9172 0462abb9bbd016cb415059449d35f4a6 {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02616.WXS.N.hg38 C3L-02616 LUAD WXS blood_normal CPT0192360002 d2a915e5-6de2-452f-a014-29804e731a73_wxs_gdc_realn.bam 39952620826 BAM harmonized CPTAC3 722af924-f5aa-4616-bb20-ab9ac54fca4e 18772626aa29fbcda3a96af30b8e9c95 {"aliquot_tag": "ALQ_60b6a7ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02616.WXS.T C3L-02616 LUAD WXS tumor CPT0192240006 CPT0192240006.WholeExome.RP-1303.bam 22298548125 BAM submitted_aligned CPTAC3 c3c4d92e-8dab-4564-a3fa-5770024357bf ad229265ccd67d9696dc5ce22bb5a37f {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02616.WXS.T.hg38 C3L-02616 LUAD WXS tumor CPT0192240006 5168a152-2084-4c61-ab12-1602325fe82e_wxs_gdc_realn.bam 30673050729 BAM harmonized CPTAC3 c2bb57ca-10e0-4ce2-b232-c9089a6b75c0 cff5930fbf3a49e7fc7767c97d8c2892 {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.miRNA-Seq.A.hg38 C3L-02617 HNSCC miRNA-Seq tissue_normal CPT0229230009 f8f27eda-38a0-4ab1-ad8a-4c2d01cde5b0_mirnaseq_gdc_realn.bam 254080034 BAM harmonized CPTAC3 8dbad6c5-cbd5-4abc-86fc-1bf65e357179 fe6672a082eb5ec49e88986ef4cbe598 {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.miRNA-Seq.S14_L005_R1.A C3L-02617 HNSCC miRNA-Seq tissue_normal CPT0229230009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L005_R1_001.unaln.bam 224526015 BAM S14_L005_R1 submitted_unaligned CPTAC3 9b503fdc-dae7-4322-bc41-6e04b95ba99b aa0f966ae0edc0b6103fe5e2e0148941 {"aliquot_tag": "ALQ_9238569a", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.miRNA-Seq.S39_L004_R1.T C3L-02617 HNSCC miRNA-Seq tumor CPT0229210013 190228_UNC32-K00270_0151_AHYLY3BBXX_CTATAC_S39_L004_R1_001.unaln.bam 250526579 BAM S39_L004_R1 submitted_unaligned CPTAC3 15dd9fb0-1a2c-4052-810d-7f8b00e536d6 81cf79743189c865253c4396541211ea {"aliquot_tag": "ALQ_1136dda5", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02617.miRNA-Seq.T.hg38 C3L-02617 HNSCC miRNA-Seq tumor CPT0229210013 364af1f6-2f1e-4baf-8e1a-913f66e2317d_mirnaseq_gdc_realn.bam 278624000 BAM harmonized CPTAC3 0f83e4d1-4ab1-4b79-be70-426f5c20a2aa 63f1b66350ff515285e4d950f62c3c8b {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02617.REP_a7d2e4ca.miRNA-Seq.S1_L003_R1.T C3L-02617 HNSCC miRNA-Seq tumor CPT0229190013 190813_UNC32-K00270_0196_AH5MCWBBXY_CTCAGA_S1_L003_R1_001.unaln.bam 194995967 BAM S1_L003_R1 submitted_unaligned CPTAC3 6985e64f-d826-43cb-bd39-04705ca07137 45331cebf8ed620f32d37f20b80ef117 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_a7d2e4ca.miRNA-Seq.T.hg38 C3L-02617 HNSCC miRNA-Seq tumor CPT0229190013 6f91627e-ca9e-47f5-a369-f58dd2dee548_mirnaseq_gdc_realn.bam 222873051 BAM harmonized CPTAC3 7a3000b0-259f-4c26-aa89-2a6e0b961b7f 3ea9f25736f12763fe3585ef08a9133e {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_a7d2e4ca.RNA-Seq.chimeric.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.chimeric.gdc_realn.bam 38800147 BAM chimeric harmonized CPTAC3 154616d0-8bc6-4da5-9fd7-03e5b58ab6f1 71a565ac08ee30d8de50a41269d2c800 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_a7d2e4ca.RNA-Seq.genomic.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.genomic.gdc_realn.bam 8359230444 BAM genomic harmonized CPTAC3 5bd926c6-b590-44ba-9c88-f087eabff7da fcd045f02df7a36bd5862a1dbfe43043 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_a7d2e4ca.RNA-Seq.S18_L005_R1.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R1_001.fastq.gz 3718849103 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 512e18e5-4302-4930-b8c2-71a44520f21a 85faf4c07b1bc96a5f0a43edbfe423a7 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_a7d2e4ca.RNA-Seq.S18_L005_R2.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R2_001.fastq.gz 4080947936 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 0dfc04ea-3414-43e6-8ab5-b956c15f5b74 983cb0098c28e2801b1c74f03ae9fe52 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_a7d2e4ca.RNA-Seq.transcriptome.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.transcriptome.gdc_realn.bam 8770149643 BAM transcriptome harmonized CPTAC3 1797fab1-ea51-4c2e-a2ed-97d4f78eeba5 7d19a1321a0a7648335712ad16cb86d6 {"aliquot_tag": "REP_a7d2e4ca", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_cea32104.MethArray.Green.T C3L-02617 HNSCC Methylation_Array tumor CPT0229190006 203561620080_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6b149790-8fea-4d6f-893f-e3ccf62a8023 c79895fa3fa771b5caef4f0be5049386 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_cea32104.MethArray.Red.T C3L-02617 HNSCC Methylation_Array tumor CPT0229190006 203561620080_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 919a4eda-47e0-42e3-b458-a0937502a17f 84417d7d1ab09a1352e5e12e8fb40492 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_cea32104.WGS.T C3L-02617 HNSCC WGS tumor CPT0229190006 CPT0229190006.WholeGenome.RP-1303.bam 76422429885 BAM submitted_aligned CPTAC3 f4a7039d-7d60-447e-817b-928d0c7056ea 3b00e13ceb72e7c2f7464c4af3c9bbe4 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_cea32104.WGS.T.hg38 C3L-02617 HNSCC WGS tumor CPT0229190006 be017248-e1fd-45fd-b185-d0e102ada4e8_wgs_gdc_realn.bam 110729474179 BAM harmonized CPTAC3 90464380-6f65-439f-9566-28df2137ae7a 0fe1851bc21fd9847639252d5006e6a3 {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_cea32104.WXS.T C3L-02617 HNSCC WXS tumor CPT0229190006 CPT0229190006.WholeExome.RP-1303.bam 23384774724 BAM submitted_aligned CPTAC3 e27459b4-e79e-4f9e-a6a1-76c46f45868f 8b527fa50e5b80ab62a47399effb4e7a {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.REP_cea32104.WXS.T.hg38 C3L-02617 HNSCC WXS tumor CPT0229190006 be017248-e1fd-45fd-b185-d0e102ada4e8_wxs_gdc_realn.bam 31873820322 BAM harmonized CPTAC3 8fc8a057-c842-4ff3-bf06-39b309a28350 7d95082bfb9ac955694b55a9c295efaa {"aliquot_tag": "REP_cea32104", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.RNA-Seq.chimeric.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.chimeric.gdc_realn.bam 33311631 BAM chimeric harmonized CPTAC3 46648afd-9058-4040-bc17-5fffe0aa0097 140e2985417817f1a8a040f4d4b21ceb {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.RNA-Seq.chimeric.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.chimeric.gdc_realn.bam 219982249 BAM chimeric harmonized CPTAC3 578ab8ac-60ba-4594-8eda-24a0d1b41ea7 b0eff5465857b26a018e1cad1db7187f {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02617.RNA-Seq.genomic.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.genomic.gdc_realn.bam 9759263084 BAM genomic harmonized CPTAC3 d7084ba1-11c8-42bf-8720-b862eece3a2d b1d4b2705358b04ea78bd2cf3a22b9ef {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.RNA-Seq.genomic.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.genomic.gdc_realn.bam 8079187493 BAM genomic harmonized CPTAC3 58896a45-987a-4d44-9456-1a23e33ee8d8 1d51dddd90c65b830e04bcf18f975d0d {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02617.RNA-Seq.S1_L001_R1.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3774086677 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 22f265ef-073e-4439-a182-721b1e73ae87 20857bfdc82634d4dff13daf5b027e94 {"aliquot_tag": "ALQ_1136dda5", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02617.RNA-Seq.S1_L001_R2.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 4195303625 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 a6870dad-b2e8-4229-90dc-a984d0e301ac d69252db560ff05d31b0f62212f7118d {"aliquot_tag": "ALQ_1136dda5", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02617.RNA-Seq.S26_L006_R1.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R1_001.fastq.gz 4477762836 FASTQ S26_L006_R1 submitted_unaligned CPTAC3 30658b7a-8b8f-4c36-a0c7-1981c39b600c 077a8c5ebd1305a4b65046110437d976 {"aliquot_tag": "ALQ_9238569a", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.RNA-Seq.S26_L006_R2.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R2_001.fastq.gz 4982512000 FASTQ S26_L006_R2 submitted_unaligned CPTAC3 bb027e79-b3eb-4ff4-bdce-b8923531ff38 7f5a640e2d332c23b19d47a3cb81d562 {"aliquot_tag": "ALQ_9238569a", "sample": "S26", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.RNA-Seq.transcriptome.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.transcriptome.gdc_realn.bam 13533329345 BAM transcriptome harmonized CPTAC3 3cf66001-a89b-4f46-88c2-b3cb0b75bb34 d534486f63cb9e30b3a220a9c6f51c5c {"aliquot_tag": "ALQ_9238569a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.RNA-Seq.transcriptome.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.transcriptome.gdc_realn.bam 9953138621 BAM transcriptome harmonized CPTAC3 49954782-2775-4f95-8f64-8505e29d6038 e98312d09e7ff91cfe01e7bf0aeb91a2 {"aliquot_tag": "ALQ_1136dda5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02617.WGS.N C3L-02617 HNSCC WGS blood_normal CPT0229330002 CPT0229330002.WholeGenome.RP-1303.bam 50029662993 BAM submitted_aligned CPTAC3 fada43cc-f22c-4626-8c7b-6de4b436c304 45fb182cf05bcc89a7f71b1b08d01030 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02617.WGS.N.hg38 C3L-02617 HNSCC WGS blood_normal CPT0229330002 f13bac4a-9644-49b5-b293-9a1c7bbc403f_wgs_gdc_realn.bam 75722880431 BAM harmonized CPTAC3 417dfe70-1bfe-4de0-930c-61ffe8b20253 e10be1a2c947ecb5083cd0df637b57c8 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02617.WXS.A C3L-02617 HNSCC WXS tissue_normal CPT0229230006 CPT0229230006.WholeExome.RP-1303.bam 46156720375 BAM submitted_aligned CPTAC3 b0093ea5-0716-4bcf-9758-d9851527e6f4 aa17079049b6249855452d69a28fa14c {"aliquot_tag": "ALQ_2874b0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.WXS.A.hg38 C3L-02617 HNSCC WXS tissue_normal CPT0229230006 7e68c738-9217-4634-a60c-6a6be4c42cf5_wxs_gdc_realn.bam 64621180276 BAM harmonized CPTAC3 6bbdbe79-7db3-4099-bb10-fc7ba272de70 6662e6acc7d060dcdafb8a19bebd1a7e {"aliquot_tag": "ALQ_2874b0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02617.WXS.N C3L-02617 HNSCC WXS blood_normal CPT0229330002 CPT0229330002.WholeExome.RP-1303.bam 39358382853 BAM submitted_aligned CPTAC3 cc419156-538f-48fe-9873-86d271221c58 26569e883a51faee3d65552bde8e7892 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02617.WXS.N.hg38 C3L-02617 HNSCC WXS blood_normal CPT0229330002 f13bac4a-9644-49b5-b293-9a1c7bbc403f_wxs_gdc_realn.bam 54963054270 BAM harmonized CPTAC3 bd478f09-96b6-4479-87ad-2566ff4b5377 35a038c8491d82fb43810360f9bca771 {"aliquot_tag": "ALQ_ceb65cb7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02617.WXS.T C3L-02617 HNSCC WXS tumor CPT0229210006 CPT0229210006.WholeExome.RP-1303.bam 27537830974 BAM submitted_aligned CPTAC3 0825e012-f875-4cb1-aeaa-6e7c1872e31a e1c57bded9878bc61749117b049114f4 {"aliquot_tag": "ALQ_7847186b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02617.WXS.T.hg38 C3L-02617 HNSCC WXS tumor CPT0229210006 7108d886-a0a3-4788-89e9-012b85c92096_wxs_gdc_realn.bam 38089035477 BAM harmonized CPTAC3 eea4be0d-4175-4494-8ee4-da7073b51867 2899cd3643f944622613250864498ee5 {"aliquot_tag": "ALQ_7847186b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02618.MethArray.Green.A C3L-02618 LSCC Methylation_Array tissue_normal CPT0241840006 204367490082_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 f99fe07c-5694-4137-aa6f-996a00aa1a4b f480d3901fa0bb2cc3fd4f71b916202f {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.MethArray.Green.T C3L-02618 LSCC Methylation_Array tumor CPT0241660006 204372030022_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 4c3d8378-b7f3-4c17-949f-10edf483332c 5daac775565654639bd1ce02c84d3c8b {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.MethArray.Red.A C3L-02618 LSCC Methylation_Array tissue_normal CPT0241840006 204367490082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 0e69ebb6-a9de-47d8-99bf-d76da96ae44d d013be9021b95722b18f08bfc386a95e {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.MethArray.Red.T C3L-02618 LSCC Methylation_Array tumor CPT0241660006 204372030022_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 f00089fa-0867-4399-9fe1-d41e7e2b60cc 438af9e864c143174754bc40891053a7 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.miRNA-Seq.A.hg38 C3L-02618 LSCC miRNA-Seq tissue_normal CPT0241840009 bea9f18f-eb91-41a1-87e6-fdc9cda99b8e_mirnaseq_gdc_realn.bam 168527219 BAM harmonized CPTAC3 3439362e-efa7-4105-85ab-0c2a782f7c66 f9cc392d5980a37ab7b65a8c6764cb76 {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.miRNA-Seq.S13_L005_R1.A C3L-02618 LSCC miRNA-Seq tissue_normal CPT0241840009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GATCAG_S13_L005_R1_001.unaln.bam 146722930 BAM S13_L005_R1 submitted_unaligned CPTAC3 cc34677b-355d-4b79-8862-6d0dff46e4fa ce8bbff6ae129331078f1c431e7b0d34 {"aliquot_tag": "ALQ_7403ee0c", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.miRNA-Seq.S38_L007_R1.T C3L-02618 LSCC miRNA-Seq tumor CPT0241660009 200224_UNC31-K00269_0267_AHC722BBXY_CTAGCT_S38_L007_R1_001.unaln.bam 267125377 BAM S38_L007_R1 submitted_unaligned CPTAC3 a45892c5-c497-4d0b-a9d3-80c8590b6e04 21677a60bd26136b0ada28ef5e066cb2 {"aliquot_tag": "ALQ_34c9dc1c", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.miRNA-Seq.T.hg38 C3L-02618 LSCC miRNA-Seq tumor CPT0241660009 12b4c961-3ae9-43b7-a87e-b9b1bf9bb429_mirnaseq_gdc_realn.bam 296426816 BAM harmonized CPTAC3 509a6ab3-0368-4d6f-a458-2bdb6536603a b04fac954bbc54dfc19a0b08570c4c93 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.RNA-Seq.chimeric.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.chimeric.gdc_realn.bam 37189276 BAM chimeric harmonized CPTAC3 d6538e66-faab-4872-9621-3dc3616a1e9b bcd003251088bb6ec738506b5aae39e8 {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.RNA-Seq.chimeric.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.chimeric.gdc_realn.bam 36874379 BAM chimeric harmonized CPTAC3 768424cf-e958-4a39-aa79-93ca10860758 f6452b76e981e962d3cbc4e291843c75 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.RNA-Seq.genomic.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.genomic.gdc_realn.bam 7501011014 BAM genomic harmonized CPTAC3 03cc730e-e60a-4e8a-a814-97c9cccacf3c 81096371d91c2fd8ce9e9f9ea4e2f24c {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.RNA-Seq.genomic.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.genomic.gdc_realn.bam 8257767855 BAM genomic harmonized CPTAC3 21ac0718-24fd-418c-9aef-ba520983c5c8 4ea2b2566ffad30f8e743a6dd0a9ead6 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.RNA-Seq.S6_L002_R1.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4081820593 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 1df6b341-bdaf-4768-b1e7-356a5f6fa66c ea22565c1c3ce1feaf58f2249cbaca08 {"aliquot_tag": "ALQ_34c9dc1c", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.RNA-Seq.S6_L002_R2.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4336151531 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 eb266e50-5c8a-4e65-aa08-f9c037a45f46 143f46f938ee5f33f9e183ca5d125ed2 {"aliquot_tag": "ALQ_34c9dc1c", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.RNA-Seq.S9_L007_R1.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R1_001.fastq.gz 3674769212 FASTQ S9_L007_R1 submitted_unaligned CPTAC3 3167e6d4-db7d-44b7-9a34-1a6c8480ca9e 6bf7ce8238c679e856bd43995ab1b397 {"aliquot_tag": "ALQ_7403ee0c", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.RNA-Seq.S9_L007_R2.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R2_001.fastq.gz 3989295347 FASTQ S9_L007_R2 submitted_unaligned CPTAC3 f0a9938b-4a76-49d7-a438-5c5fbb275fa6 80e10812629391d8708319781fae1bd9 {"aliquot_tag": "ALQ_7403ee0c", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.RNA-Seq.transcriptome.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.transcriptome.gdc_realn.bam 9011496153 BAM transcriptome harmonized CPTAC3 a32af426-ff3d-4a36-babc-a62bba3b1450 43ed23b20f000eafa5c2677625c85b1f {"aliquot_tag": "ALQ_7403ee0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.RNA-Seq.transcriptome.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.transcriptome.gdc_realn.bam 10664110375 BAM transcriptome harmonized CPTAC3 3b0572da-d06a-4ff8-9a8e-8f52fd51fcc3 6e7cadaf0c4b16feda6bbc03d96d6bd6 {"aliquot_tag": "ALQ_34c9dc1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.WGS.N C3L-02618 LSCC WGS blood_normal CPT0241930002 CPT0241930002.WholeGenome.RP-2158.bam 19495973747 BAM submitted_aligned CPTAC3 292bb6a2-6ac0-43d0-bf8a-9be498895b45 19488fee154b63e55b0005dd323f181e {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02618.WGS.N.hg38 C3L-02618 LSCC WGS blood_normal CPT0241930002 0ef644e0-864e-46a0-8539-b5c476cb0739_wgs_gdc_realn.bam 57729873603 BAM harmonized CPTAC3 f47749cb-0565-4d5f-913e-45ed04aa8ff5 9b7ae4df3378745cde142e1b3fc04290 {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02618.WGS.T C3L-02618 LSCC WGS tumor CPT0241660006 CPT0241660006.WholeGenome.RP-2158.bam 22137845556 BAM submitted_aligned CPTAC3 9fdb93bd-25a9-476b-983c-b4db9e850577 896a6d10eeb858e0e3682052896b00ac {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.WGS.T.hg38 C3L-02618 LSCC WGS tumor CPT0241660006 b233ed86-5554-4dcc-af8e-51fab4b8befa_wgs_gdc_realn.bam 66785654607 BAM harmonized CPTAC3 2f09606d-6c27-4c48-9f90-c8b4987fdb3f 4297abf36ecf62ea6d90bcb1f318de84 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.WXS.A C3L-02618 LSCC WXS tissue_normal CPT0241840006 CPT0241840006.WholeExome.RP-1303.bam 22249399235 BAM submitted_aligned CPTAC3 2d8928c7-2ecb-46a4-9c0d-c8ab9e4d271f df706bf7e011a5f8b0a52d6e8754b245 {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.WXS.A.hg38 C3L-02618 LSCC WXS tissue_normal CPT0241840006 5a727c99-0cda-4dcc-b78e-47395c1b1c3a_wxs_gdc_realn.bam 31107980679 BAM harmonized CPTAC3 2248c95e-7424-4bab-b0cb-63c98f4285f8 a615d0b7deb5fb359149f1ad7b6e2f44 {"aliquot_tag": "ALQ_e4bcf39d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02618.WXS.N C3L-02618 LSCC WXS blood_normal CPT0241930002 CPT0241930002.WholeExome.RP-1303.bam 22789677761 BAM submitted_aligned CPTAC3 e98929a7-f5aa-46d3-8fac-64727655594c c81cf922bdc4a9bd108b31dfb57352af {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02618.WXS.N.hg38 C3L-02618 LSCC WXS blood_normal CPT0241930002 0ef644e0-864e-46a0-8539-b5c476cb0739_wxs_gdc_realn.bam 30815339085 BAM harmonized CPTAC3 8736b131-4ea0-4f0a-ac31-059722feabab bd35539497cf02ab4f345f002e8e02bc {"aliquot_tag": "ALQ_9aad3831", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02618.WXS.T C3L-02618 LSCC WXS tumor CPT0241660006 CPT0241660006.WholeExome.RP-1303.bam 19580821549 BAM submitted_aligned CPTAC3 f16ddfe5-ad2a-4866-8070-e5db53d6d11c dbfba0259b8636091a4abeed2b8e38c7 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02618.WXS.T.hg38 C3L-02618 LSCC WXS tumor CPT0241660006 b233ed86-5554-4dcc-af8e-51fab4b8befa_wxs_gdc_realn.bam 26774700322 BAM harmonized CPTAC3 2af34c4e-c474-4c28-8f99-50a780d03f1b 9a588892d18b0dad1853c6f549cb8aa7 {"aliquot_tag": "ALQ_a476c18d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02619.MethArray.Green.A C3L-02619 LSCC Methylation_Array tissue_normal CPT0191930009 203219650156_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3618518d-c1bf-4771-988e-7274b5413844 6fd26dd58234c14fa64ee397b86f357e {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.MethArray.Green.T C3L-02619 LSCC Methylation_Array tumor CPT0191860006 203220070100_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fad90639-dbd9-4831-b0fd-fc84abfb912e 7c99fdd5099f079c422fe116c32b6aba {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.MethArray.Red.A C3L-02619 LSCC Methylation_Array tissue_normal CPT0191930009 203219650156_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 cd657435-2ebd-4976-a94c-de5491ceb4a4 e0aefbf304db38bac4de968ebb4da14f {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.MethArray.Red.T C3L-02619 LSCC Methylation_Array tumor CPT0191860006 203220070100_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e0b83714-8c39-4d0a-bb16-0c333f8f26ce 9a9b5e38c3715a599807bfa8919d9346 {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.miRNA-Seq.A.hg38 C3L-02619 LSCC miRNA-Seq tissue_normal CPT0191930006 94d601ca-c75e-4136-8c94-f59291e859e3_mirnaseq_gdc_realn.bam 197733691 BAM harmonized CPTAC3 e5b383f0-1600-46ca-8a8f-baf10113a1ed 79d2c27b985e5879e54057e6513c57e3 {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.miRNA-Seq.S39_L004_R1.T C3L-02619 LSCC miRNA-Seq tumor CPT0191860009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTCAGA_S39_L004_R1_001.unaln.bam 180587935 BAM S39_L004_R1 submitted_unaligned CPTAC3 568d1b08-efbb-41af-b515-a101de9acbee fb1350929aecc8e682af65a688f397a2 {"aliquot_tag": "ALQ_ac4b9478", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.miRNA-Seq.S44_L004_R1.A C3L-02619 LSCC miRNA-Seq tissue_normal CPT0191930006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCATTC_S44_L004_R1_001.unaln.bam 176882188 BAM S44_L004_R1 submitted_unaligned CPTAC3 a61ca2e8-4a54-4629-8be5-9377b6993e61 117c9b0073e0150cba3d46525f34c153 {"aliquot_tag": "ALQ_3f48d53c", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.miRNA-Seq.T.hg38 C3L-02619 LSCC miRNA-Seq tumor CPT0191860009 bb58e994-28e1-4e7b-8235-b182e2c1d36e_mirnaseq_gdc_realn.bam 211722589 BAM harmonized CPTAC3 a427518a-3b6d-4621-8bd2-24b590c33d9f 98acb01c0718e518a6fb63691ceacbe3 {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.RNA-Seq.chimeric.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.chimeric.gdc_realn.bam 116167945 BAM chimeric harmonized CPTAC3 c08136ac-4eaf-415a-9974-16bcef52a1b1 7aa2de73464556ccd58cd7a3245f7068 {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.RNA-Seq.chimeric.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.chimeric.gdc_realn.bam 140087339 BAM chimeric harmonized CPTAC3 33d89ca2-e8df-4440-9eb9-3dd80e8a6d26 bc3d9817ab812188b846ba8f17bd23db {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.RNA-Seq.genomic.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.genomic.gdc_realn.bam 7065561886 BAM genomic harmonized CPTAC3 329c7c26-1c39-4051-ac5b-5407799678d1 7a135a952c14029e1c629d16251ef413 {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.RNA-Seq.genomic.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.genomic.gdc_realn.bam 6543497540 BAM genomic harmonized CPTAC3 898ce4a1-8c64-4c19-ae12-a6bf5bdedf19 94fd577a89a97dd2e2973f9ddc5893c1 {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.RNA-Seq.S12_L003_R1.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R1_001.fastq.gz 2810625853 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 fa0b3288-254d-4ddf-be1d-30a9f308e479 b34de35ee693a5a461c667d147bd5d82 {"aliquot_tag": "ALQ_ac4b9478", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.RNA-Seq.S12_L003_R2.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R2_001.fastq.gz 2845096890 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 33870c11-875d-4612-b2f5-6fca70a78a51 cb4b6629ec6eb01bd817bf7d879cc454 {"aliquot_tag": "ALQ_ac4b9478", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.RNA-Seq.S19_L005_R1.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R1_001.fastq.gz 2942247998 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 0bfdc730-4c3b-4e4b-8955-54e22c896cda 5de23d9161a1738a0aff2b319920dfd2 {"aliquot_tag": "ALQ_3f48d53c", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.RNA-Seq.S19_L005_R2.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3194630772 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 a5b1ad06-1419-43a9-91de-b5ca9d912edb 1f9cd0b1ef0f5daa7f6bc90283d46487 {"aliquot_tag": "ALQ_3f48d53c", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.RNA-Seq.transcriptome.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.transcriptome.gdc_realn.bam 8108245710 BAM transcriptome harmonized CPTAC3 4d985b25-1f04-495c-8428-d2c16d47c9a5 07a21a49d571eb29527b41d4f74e55de {"aliquot_tag": "ALQ_3f48d53c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.RNA-Seq.transcriptome.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.transcriptome.gdc_realn.bam 7107702675 BAM transcriptome harmonized CPTAC3 be64ef6a-d1cc-4eab-9311-f0bb7fa73475 7fbb1dc1b4024f1ba651ae2faa509176 {"aliquot_tag": "ALQ_ac4b9478", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.WGS.A C3L-02619 LSCC WGS tissue_normal CPT0191930009 CPT0191930009.WholeGenome.RP-1303.bam 64529357779 BAM submitted_aligned CPTAC3 ac1220e5-9ecf-40df-9693-4b93994dbb21 bd6a52ee2bfbd284f38dbe3645882d88 {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.WGS.A.hg38 C3L-02619 LSCC WGS tissue_normal CPT0191930009 86a146cb-c16b-4d97-8b77-e5e9dfb1ed6d_wgs_gdc_realn.bam 93167766642 BAM harmonized CPTAC3 2f9b5e4a-831c-4b01-8ed7-af9df0f60657 8894068caf2c9fec4c8a12eeea048f4f {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.WGS.N C3L-02619 LSCC WGS blood_normal CPT0192020002 CPT0192020002.WholeGenome.RP-1303.bam 54766919303 BAM submitted_aligned CPTAC3 8a1621a2-d2b4-4e87-8727-22e722535a83 020247e703e6d229ba3bf444eb42161b {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02619.WGS.N.hg38 C3L-02619 LSCC WGS blood_normal CPT0192020002 b7a3d3c7-0b0d-4244-881b-333f1c1e38e9_wgs_gdc_realn.bam 77954383541 BAM harmonized CPTAC3 52912028-5b24-424a-9690-188bd3bf7b1b 523cf48a846895c16746232e6257e3d3 {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02619.WGS.T C3L-02619 LSCC WGS tumor CPT0191860006 CPT0191860006.WholeGenome.RP-1303.bam 65132432150 BAM submitted_aligned CPTAC3 52d1e307-52ba-4219-9294-7ac340e3b187 44601d6d7c5ff09142738421c4a81d1a {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.WGS.T.hg38 C3L-02619 LSCC WGS tumor CPT0191860006 f693b499-5f81-4c9a-a653-c2f989293a5f_wgs_gdc_realn.bam 92205286209 BAM harmonized CPTAC3 0698f59a-d0cf-4362-9398-f40c9403ef1a 68a58a51f6728f7a04c4047c06ac40cb {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.WXS.A C3L-02619 LSCC WXS tissue_normal CPT0191930009 CPT0191930009.WholeExome.RP-1303.bam 27733925768 BAM submitted_aligned CPTAC3 4c41a036-661f-45a5-ac74-b2479b9e59d1 209175cc5fe43d4ea28656e20f008f21 {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.WXS.A.hg38 C3L-02619 LSCC WXS tissue_normal CPT0191930009 86a146cb-c16b-4d97-8b77-e5e9dfb1ed6d_wxs_gdc_realn.bam 37787418555 BAM harmonized CPTAC3 be796e17-9b03-4333-980c-50b083b64266 8dbcbcb5cf0db8b65149fb89c9fb3f77 {"aliquot_tag": "ALQ_aff7c8ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02619.WXS.N C3L-02619 LSCC WXS blood_normal CPT0192020002 CPT0192020002.WholeExome.RP-1303.bam 28608284794 BAM submitted_aligned CPTAC3 5e398eb2-fe66-4280-afbd-a886fcd31c16 2ab73e423783fb63916cba3153dfa119 {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02619.WXS.N.hg38 C3L-02619 LSCC WXS blood_normal CPT0192020002 b7a3d3c7-0b0d-4244-881b-333f1c1e38e9_wxs_gdc_realn.bam 39062911134 BAM harmonized CPTAC3 34a67dfe-a2d6-474f-a7e9-3c29d9dae9f8 19cba090c399e4f7fa441fde88798e47 {"aliquot_tag": "ALQ_13a273c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02619.WXS.T C3L-02619 LSCC WXS tumor CPT0191860006 CPT0191860006.WholeExome.RP-1303.bam 30127921789 BAM submitted_aligned CPTAC3 c773f1d6-ef7a-4300-9c95-55837092b64d 4b3e7a2eb5f8395b9ca6de78e3c58b80 {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02619.WXS.T.hg38 C3L-02619 LSCC WXS tumor CPT0191860006 f693b499-5f81-4c9a-a653-c2f989293a5f_wxs_gdc_realn.bam 41733564115 BAM harmonized CPTAC3 5381b2f8-b689-49d4-a760-407462e0ba6e e230293149aef982fb6a0241796f7646 {"aliquot_tag": "ALQ_3cf489e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.MethArray.Green.A C3L-02621 HNSCC Methylation_Array tissue_normal CPT0201860007 203220070154_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 58c2a7be-31e4-4017-924c-cd8002a87cfb 1d52da004b7d7df238a50a4be3b0cce5 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.MethArray.Green.T C3L-02621 HNSCC Methylation_Array tumor CPT0201830007 203271740119_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 656d2f76-ba87-4209-959d-4fc30f1b33fd 6c7a3aab23aa9466edefb5db37b1e8d7 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.MethArray.Red.A C3L-02621 HNSCC Methylation_Array tissue_normal CPT0201860007 203220070154_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 e9e39801-f561-49e5-8fd3-80d0ca77d893 bb34a9c5ef189149ed356ceecb94d682 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.MethArray.Red.T C3L-02621 HNSCC Methylation_Array tumor CPT0201830007 203271740119_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 7392ca4c-95fc-43a5-9478-647a3fc79d67 fa688b56e5a7c1e3a84c7d7822bb3ba8 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.miRNA-Seq.A.hg38 C3L-02621 HNSCC miRNA-Seq tissue_normal CPT0201860010 01e05f87-512c-4e86-8eda-3459285f56da_mirnaseq_gdc_realn.bam 294444646 BAM harmonized CPTAC3 067867f6-4320-444a-9f57-ac8ca134f2cb f620aa563ae7a15b5f280750c70ef337 {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.miRNA-Seq.S12_L003_R1.T C3L-02621 HNSCC miRNA-Seq tumor CPT0201830010 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L003_R1_001.unaln.bam 224697784 BAM S12_L003_R1 submitted_unaligned CPTAC3 00f852f5-dc3a-4bbf-81a1-8ee39f66470f 480492d57eec178c91107a4bf0accd7e {"aliquot_tag": "ALQ_22aeb503", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.miRNA-Seq.S30_L004_R1.A C3L-02621 HNSCC miRNA-Seq tissue_normal CPT0201860010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L004_R1_001.unaln.bam 263060385 BAM S30_L004_R1 submitted_unaligned CPTAC3 6ac47d00-cce8-418f-a3b5-4e3afb810a68 2e28798dd1ce97d755a4ddf555296d79 {"aliquot_tag": "ALQ_ea4e3a73", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.miRNA-Seq.T.hg38 C3L-02621 HNSCC miRNA-Seq tumor CPT0201830010 3224352a-95c0-4e53-9a9b-b10746f65d01_mirnaseq_gdc_realn.bam 254574045 BAM harmonized CPTAC3 b1d26dbe-810b-46d4-885a-9b142b831d5a f8e4963b8725c5476172078ff6ebeff1 {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.RNA-Seq.chimeric.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.chimeric.gdc_realn.bam 191015837 BAM chimeric harmonized CPTAC3 5e5f5e62-b277-447e-aa94-76800dd6e2ff f1337dc3e8980ae110a4c307f1266529 {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.RNA-Seq.chimeric.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.chimeric.gdc_realn.bam 223119811 BAM chimeric harmonized CPTAC3 8c4c9b95-8ea6-4475-b17f-7e448bbe17b4 1bc73bb06cced2e20c70c437fcadcb6b {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.RNA-Seq.genomic.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.genomic.gdc_realn.bam 8771265755 BAM genomic harmonized CPTAC3 ceb83175-2d65-4cf2-a1f5-e0d091ad847b 416b8242c97e095a2bc229d64f2dc20a {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.RNA-Seq.genomic.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.genomic.gdc_realn.bam 8480345286 BAM genomic harmonized CPTAC3 92ecca8f-a704-4256-b914-752d1723a99f a4f25f3d055c1298f6a6aa73c08cb772 {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.RNA-Seq.S11_L003_R1.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4107023882 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 265d9f67-617f-483e-a9bd-4e57ca8233e7 34bec79a1b86b735f0e18c423aebfcdf {"aliquot_tag": "ALQ_ea4e3a73", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.RNA-Seq.S11_L003_R2.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4628961023 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 f9ffd56c-75e7-423e-b828-970d1925f002 853b2e3d504868f78795c5c5bba71e41 {"aliquot_tag": "ALQ_ea4e3a73", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.RNA-Seq.S3_L007_R1.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R1_001.fastq.gz 3836825814 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 a7fffb0e-420f-4b9e-913c-734eb8094125 8792d0997f4e651d5d6950025caaba77 {"aliquot_tag": "ALQ_22aeb503", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.RNA-Seq.S3_L007_R2.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R2_001.fastq.gz 4247918531 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 db274a48-4275-4af0-a114-841f96437811 b64a6692e9c31b5f0f52dd8867f97b5e {"aliquot_tag": "ALQ_22aeb503", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.RNA-Seq.transcriptome.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.transcriptome.gdc_realn.bam 12236059586 BAM transcriptome harmonized CPTAC3 c9871b6d-fb07-46b3-80e9-bb6183e103c2 c3bc55f337051562e910b489add8b404 {"aliquot_tag": "ALQ_ea4e3a73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.RNA-Seq.transcriptome.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.transcriptome.gdc_realn.bam 10049164726 BAM transcriptome harmonized CPTAC3 2f2382fa-739b-467b-9fd9-d6c3887419fb aa7e1ad2b6ae33a69881b18427e2f4d8 {"aliquot_tag": "ALQ_22aeb503", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.WGS.N C3L-02621 HNSCC WGS blood_normal CPT0201970002 CPT0201970002.WholeGenome.RP-1303.bam 58733948249 BAM submitted_aligned CPTAC3 79b2d397-3845-47ee-8cda-14459d014f69 29125d5ce08358237b444703a4cf4a60 {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02621.WGS.N.hg38 C3L-02621 HNSCC WGS blood_normal CPT0201970002 02f60b7f-627c-467f-82d6-b766f213c238_wgs_gdc_realn.bam 85697597279 BAM harmonized CPTAC3 20eae819-83fd-4ade-9bb9-ae11912f675b 5c4c361ed8fcd8810779a3e4355a98f8 {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02621.WGS.T C3L-02621 HNSCC WGS tumor CPT0201830007 CPT0201830007.WholeGenome.RP-1303.bam 75604319349 BAM submitted_aligned CPTAC3 fb6ecb3e-06e4-484e-a96c-7acd17c1669f 4f66cac17062d2d3c585bc244f540375 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.WGS.T.hg38 C3L-02621 HNSCC WGS tumor CPT0201830007 4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wgs_gdc_realn.bam 112311513475 BAM harmonized CPTAC3 f5e5f962-cd15-424f-bed2-496c59837503 4864b6ead4b6252522f2aba174899479 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.WXS.A C3L-02621 HNSCC WXS tissue_normal CPT0201860007 CPT0201860007.WholeExome.RP-1303.bam 21064254446 BAM submitted_aligned CPTAC3 75cccd1d-c31d-4c71-82d3-9a495700a3a3 03ed56590cb14d88a6cc9e898bc8f550 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.WXS.A.hg38 C3L-02621 HNSCC WXS tissue_normal CPT0201860007 cc7201d2-d4e1-416e-908c-767a7b6c1a8c_wxs_gdc_realn.bam 29197183904 BAM harmonized CPTAC3 18c849aa-ab12-4706-9ca9-71eae8f5e921 8b620e1026fb3259e99877d1631caea4 {"aliquot_tag": "ALQ_6d319e91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02621.WXS.N C3L-02621 HNSCC WXS blood_normal CPT0201970002 CPT0201970002.WholeExome.RP-1303.bam 27468570258 BAM submitted_aligned CPTAC3 da6f7e59-955c-44e2-97a6-f5ff069940f1 1fbc82034f9e7011377836c1d3fec5f4 {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02621.WXS.N.hg38 C3L-02621 HNSCC WXS blood_normal CPT0201970002 02f60b7f-627c-467f-82d6-b766f213c238_wxs_gdc_realn.bam 39020161451 BAM harmonized CPTAC3 fd50b411-9585-42dc-adbb-a6dcaed253ad 050923e3eded89b5c26a0a3c0984093a {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02621.WXS.T C3L-02621 HNSCC WXS tumor CPT0201830007 CPT0201830007.WholeExome.RP-1303.bam 24957617938 BAM submitted_aligned CPTAC3 9e30c2a0-7698-42e7-9dcc-da1f0bcccef3 d53a7b6472641aff9f4c096376ec9d71 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02621.WXS.T.hg38 C3L-02621 HNSCC WXS tumor CPT0201830007 4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wxs_gdc_realn.bam 34462296906 BAM harmonized CPTAC3 cdabe1b1-bec3-4fc9-9d68-adb41cf03a19 abfc7d8396ae1caabbb71edb962b3023 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02624.MethArray.Green.A C3L-02624 LSCC Methylation_Array tissue_normal CPT0227070006 203219670117_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d70d0285-26a9-4267-b68d-b1ad8edd7a6e a7253c9e661061dec9ba08cbe08d6a14 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.MethArray.Green.T C3L-02624 LSCC Methylation_Array tumor CPT0227020006 203219670106_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 81f1f759-5301-479d-bcfe-56722228c718 1dce7b4195732e54989e0d6f20f95d8d {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.MethArray.Red.A C3L-02624 LSCC Methylation_Array tissue_normal CPT0227070006 203219670117_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 cc38e3ac-6db8-4c33-93db-3ee6123cc8db 97afcd65f3e933e93a8dc4f4c4d151e9 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.MethArray.Red.T C3L-02624 LSCC Methylation_Array tumor CPT0227020006 203219670106_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 536e41d6-ea46-41dd-a000-2d54bf508ca5 92bcc6d3790e319a21dd64623ae25615 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.miRNA-Seq.A.hg38 C3L-02624 LSCC miRNA-Seq tissue_normal CPT0227070009 9deafcf7-fff8-453a-a20c-94cb9d3eace4_mirnaseq_gdc_realn.bam 229880978 BAM harmonized CPTAC3 e87289df-9eca-4e72-bce2-9a5e1e708397 37252e8cb7ca523bc45f020c3b2cb602 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.miRNA-Seq.S32_L002_R1.T C3L-02624 LSCC miRNA-Seq tumor CPT0227020009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTAGAG_S32_L002_R1_001.unaln.bam 201368151 BAM S32_L002_R1 submitted_unaligned CPTAC3 82666cc9-57b1-4460-bf7c-e1392791cd96 da6131ba86503f218e9ab55dde3a139f {"aliquot_tag": "ALQ_b2afa57c", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.miRNA-Seq.S7_L005_R1.A C3L-02624 LSCC miRNA-Seq tissue_normal CPT0227070009 190206_UNC31-K00269_0191_AH2WY5BBXY_TATAAT_S7_L005_R1_001.unaln.bam 211404822 BAM S7_L005_R1 submitted_unaligned CPTAC3 bebd9f63-587d-42f7-af05-ca2ba2ed0cea aa85a9bdb9a9ba9856c6f82e78756b92 {"aliquot_tag": "ALQ_7a4f2a0c", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.miRNA-Seq.T.hg38 C3L-02624 LSCC miRNA-Seq tumor CPT0227020009 23d933cd-8c1d-420d-9373-0669304211f4_mirnaseq_gdc_realn.bam 217105926 BAM harmonized CPTAC3 1dc1335d-8a59-4500-a068-6bded8042487 8b43737a3ef9fcabff71a823df0ef374 {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.RNA-Seq.chimeric.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.chimeric.gdc_realn.bam 76539259 BAM chimeric harmonized CPTAC3 62fb88e4-9747-4931-b8a7-56744af19335 adcfaec0d82054669d0e1da061aae2c5 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.RNA-Seq.chimeric.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.chimeric.gdc_realn.bam 65714072 BAM chimeric harmonized CPTAC3 2e613a35-2b4e-4623-a692-815ef7db9525 12f24fc2085ceb413106875427fb3e6e {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.RNA-Seq.genomic.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.genomic.gdc_realn.bam 6278786146 BAM genomic harmonized CPTAC3 c32e8173-f976-4b60-904a-b1f8e7488475 f43bef57b2fcd16de5463f6bb74e1a59 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.RNA-Seq.genomic.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.genomic.gdc_realn.bam 8669049446 BAM genomic harmonized CPTAC3 2b10ddff-aba4-40a5-926d-5d9cb9035041 4c9a7236cb86835a78c6e9d4c7638a48 {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.RNA-Seq.S3_L001_R1.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3910054887 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5cd74265-d7d3-44d6-a11b-5c2d32232388 f16b0258f0db247d58b1d53dab92183c {"aliquot_tag": "ALQ_b2afa57c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.RNA-Seq.S3_L001_R2.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4444601774 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 e1a3f69b-ee57-4a0e-8bfb-eef41f0df37c 6d4b0456b0b98d4299df7e387aaeea8b {"aliquot_tag": "ALQ_b2afa57c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.RNA-Seq.S9_L003_R1.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R1_001.fastq.gz 2898097253 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 68af9350-beb8-4fcb-909a-f6fa91c82d3e 38ad27c2fae4597d8a6c7ebfd441c6c2 {"aliquot_tag": "ALQ_7a4f2a0c", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.RNA-Seq.S9_L003_R2.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R2_001.fastq.gz 3233478006 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 e5c0fe70-a7f2-4296-9251-f2cce119cdc2 b0e5db38a81d1fcac4b094529a33f58b {"aliquot_tag": "ALQ_7a4f2a0c", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.RNA-Seq.transcriptome.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.transcriptome.gdc_realn.bam 7242031696 BAM transcriptome harmonized CPTAC3 1d7e8411-3c83-4b7b-a94c-fd2ec293d523 ccb7e023402e386e3144c6b9e2f67596 {"aliquot_tag": "ALQ_7a4f2a0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.RNA-Seq.transcriptome.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.transcriptome.gdc_realn.bam 7943021158 BAM transcriptome harmonized CPTAC3 7edd98e1-b1d6-4da9-a102-ad56db831f30 e54ddcb57b03a8e133c43d02030c1ffb {"aliquot_tag": "ALQ_b2afa57c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.WGS.A C3L-02624 LSCC WGS tissue_normal CPT0227070006 CPT0227070006.WholeGenome.RP-1303.bam 58761381541 BAM submitted_aligned CPTAC3 e1fbb5cf-e789-4962-bd0f-0f969bbeb09a 4f311f15247d379ed37e5da2f0863de0 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.WGS.A.hg38 C3L-02624 LSCC WGS tissue_normal CPT0227070006 2f3c18a4-fdda-4b95-95e3-cca183fc73e1_wgs_gdc_realn.bam 85786854562 BAM harmonized CPTAC3 23f67a4c-6297-4d64-8e55-0646b33d7a2c 6c13203c23b978bdab563ca41821dc7c {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.WGS.N C3L-02624 LSCC WGS blood_normal CPT0227170002 CPT0227170002.WholeGenome.RP-1303.bam 64864111588 BAM submitted_aligned CPTAC3 88722b84-b0f4-4eee-9eda-bbd064ebb549 7980a8428a99eadb8840bca012f26cb0 {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02624.WGS.N.hg38 C3L-02624 LSCC WGS blood_normal CPT0227170002 1f4a1020-576e-49f9-a1f9-4fe5c87941b7_wgs_gdc_realn.bam 93093483277 BAM harmonized CPTAC3 69daca40-9f0f-43bd-bfef-9d49b9ec7055 9592774725c119f8dae6289fe420c669 {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02624.WGS.T C3L-02624 LSCC WGS tumor CPT0227020006 CPT0227020006.WholeGenome.RP-1303.bam 65028569882 BAM submitted_aligned CPTAC3 ef61807a-ae6a-4d61-89f4-08fd8cd84394 6427b67ed5db9533a4062a5710f0da56 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.WGS.T.hg38 C3L-02624 LSCC WGS tumor CPT0227020006 7a444a8f-b557-47ba-bfdb-241bfb165c82_wgs_gdc_realn.bam 93973548993 BAM harmonized CPTAC3 04034030-8eac-44c6-b0e1-f9e477c978c5 208c9f46d0a58e8ee35bc652ef8fb623 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.WXS.A C3L-02624 LSCC WXS tissue_normal CPT0227070006 CPT0227070006.WholeExome.RP-1303.bam 17229181077 BAM submitted_aligned CPTAC3 8fe2ecac-68c5-4db1-ab7d-954863a10190 b5f042c4ece20dd70f4ca53ee908deb9 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.WXS.A.hg38 C3L-02624 LSCC WXS tissue_normal CPT0227070006 2f3c18a4-fdda-4b95-95e3-cca183fc73e1_wxs_gdc_realn.bam 24620258414 BAM harmonized CPTAC3 1fe52f8c-b1c1-4eb9-b0a8-3ec9993cc56e 04f71c4023d1c58e51fa841e4cab984b {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02624.WXS.N C3L-02624 LSCC WXS blood_normal CPT0227170002 CPT0227170002.WholeExome.RP-1303.bam 20636903558 BAM submitted_aligned CPTAC3 82790494-ff22-45e9-b1c5-53423c989575 d5bbf8280a76bd12691fa366c5035524 {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02624.WXS.N.hg38 C3L-02624 LSCC WXS blood_normal CPT0227170002 1f4a1020-576e-49f9-a1f9-4fe5c87941b7_wxs_gdc_realn.bam 28011162155 BAM harmonized CPTAC3 48d7558e-19fa-4c43-b7a9-9856b66a9a8a 4d86ca4c6f0de40993b36aabef517ada {"aliquot_tag": "ALQ_26c12021", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02624.WXS.T C3L-02624 LSCC WXS tumor CPT0227020006 CPT0227020006.WholeExome.RP-1303.bam 18506989694 BAM submitted_aligned CPTAC3 af2bf1d5-dbcf-499e-b227-b5ad6db5fd55 43cd497230a77ec9011026ec1ac12983 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02624.WXS.T.hg38 C3L-02624 LSCC WXS tumor CPT0227020006 7a444a8f-b557-47ba-bfdb-241bfb165c82_wxs_gdc_realn.bam 26181998581 BAM harmonized CPTAC3 df87b19b-a336-4b6b-985e-d9446044870d 051a9fa7294adf1ce94a611b85b770d1 {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02625.MethArray.Green.A C3L-02625 LSCC Methylation_Array tissue_normal CPT0191750009 203219650174_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 feb49a98-4c0a-4b41-a9cf-50f5c6d18d5e 3647d1d52f22de95836191308190ad1b {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.MethArray.Green.T C3L-02625 LSCC Methylation_Array tumor CPT0191710006 203219650157_R05C01_Grn.idat 13676220 IDAT Green NA CPTAC3 591f1110-e909-4a45-b5a5-7494e4d4be72 f7438e228b752411766ae94c4d6ad451 {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.MethArray.Red.A C3L-02625 LSCC Methylation_Array tissue_normal CPT0191750009 203219650174_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 2135079d-2fcf-4aee-ac7e-5630d97ee6be 77fe5f2db121930b1d60475afebf9d88 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.MethArray.Red.T C3L-02625 LSCC Methylation_Array tumor CPT0191710006 203219650157_R05C01_Red.idat 13676220 IDAT Red NA CPTAC3 664b03f3-55a2-4432-a470-04f6dafd1828 1087e7ebaa6bfc77826bfeb62227cc1b {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.miRNA-Seq.A.hg38 C3L-02625 LSCC miRNA-Seq tissue_normal CPT0191750006 7b36adfd-9a7f-4e5b-8e21-498a927d8da1_mirnaseq_gdc_realn.bam 200222129 BAM harmonized CPTAC3 9f70238f-4774-4415-ab05-76420e744a0d 5be82be2696c5d1ba2a722755604dc87 {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.miRNA-Seq.S133_L007_R1.T C3L-02625 LSCC miRNA-Seq tumor CPT0191710009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATGTCA_S133_L007_R1_001.unaln.bam 314449509 BAM S133_L007_R1 submitted_unaligned CPTAC3 ed183a68-2ba2-46dc-9418-b8794aa696ce 20849afa04e2aa3a7a8b9239786e624f {"aliquot_tag": "ALQ_ef3dfabd", "sample": "S133", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.miRNA-Seq.S40_L002_R1.A C3L-02625 LSCC miRNA-Seq tissue_normal CPT0191750006 190206_UNC31-K00269_0191_AH2WY5BBXY_GATCAG_S40_L002_R1_001.unaln.bam 177523803 BAM S40_L002_R1 submitted_unaligned CPTAC3 c17d22d1-17f1-412f-8b7a-7192cce2386e f7f12f47561dc1d05791a25bdf6e620e {"aliquot_tag": "ALQ_8a0241ec", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.miRNA-Seq.T.hg38 C3L-02625 LSCC miRNA-Seq tumor CPT0191710009 b7e27b07-7f9d-4ac5-a3b8-c73faf86d07d_mirnaseq_gdc_realn.bam 337317416 BAM harmonized CPTAC3 5e258607-9690-4377-a6bc-dec475380099 41dfc875320aed2c7a7937ed3f51d7b7 {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.RNA-Seq.chimeric.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.chimeric.gdc_realn.bam 54260379 BAM chimeric harmonized CPTAC3 7098e1c3-16a8-4384-be5b-b3573f9b7529 73d2d7820083fe1019f40fec493cf70c {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.RNA-Seq.chimeric.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.chimeric.gdc_realn.bam 62986653 BAM chimeric harmonized CPTAC3 5d41ff28-5c19-4b85-96c1-36b204e07bae 0f4757437a968ef80489a406dffc47d5 {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.RNA-Seq.genomic.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.genomic.gdc_realn.bam 8447707178 BAM genomic harmonized CPTAC3 8bcebcbd-b626-46d1-bb20-1c48f7024d7a d85ec85211ea410a8dd479c529814eeb {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.RNA-Seq.genomic.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.genomic.gdc_realn.bam 9739833130 BAM genomic harmonized CPTAC3 809f7a84-1656-47d3-9d3c-f4184853a9e0 d0cb9dddf75c3e32dfccbcfd63203fbb {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.RNA-Seq.S17_L005_R1.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4106569240 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 28c96c62-3cea-4588-81da-ddf4d0d1ec20 a25822ea27a351f5172dabff1a968fb6 {"aliquot_tag": "ALQ_ef3dfabd", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.RNA-Seq.S17_L005_R2.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4451710393 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 f42ddcfe-9bab-4114-a5f6-fc7bafcaf4af 29503dffbe665894681b181e5d15192f {"aliquot_tag": "ALQ_ef3dfabd", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.RNA-Seq.S18_L005_R1.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R1_001.fastq.gz 3961905437 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 0ae34a3f-8738-4980-8091-9fdef3e94af9 066ddf53db463b1741bfab3966fe8a1e {"aliquot_tag": "ALQ_8a0241ec", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.RNA-Seq.S18_L005_R2.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R2_001.fastq.gz 4365451645 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 381b6fc2-3ebb-4ff8-84c9-a8096f90a2a4 081f3234241d5bcaeab715b5012a6d92 {"aliquot_tag": "ALQ_8a0241ec", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.RNA-Seq.transcriptome.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.transcriptome.gdc_realn.bam 9389168150 BAM transcriptome harmonized CPTAC3 17b29a50-6256-4639-a8c1-3b933dd576c5 9686dbc32a7330589e2f70b0c45e620e {"aliquot_tag": "ALQ_8a0241ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.RNA-Seq.transcriptome.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.transcriptome.gdc_realn.bam 10162551868 BAM transcriptome harmonized CPTAC3 5475cc0e-b455-46da-a36f-181a74d294db bd33860c8e59e9c39629e040b44bd46a {"aliquot_tag": "ALQ_ef3dfabd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.WGS.A C3L-02625 LSCC WGS tissue_normal CPT0191750009 CPT0191750009.WholeGenome.RP-1303.bam 64228150615 BAM submitted_aligned CPTAC3 8ccc5bb1-8cbb-49e4-bfe8-d6dbd823f187 fca357c0056862acb64519795ddc7ce7 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.WGS.A.hg38 C3L-02625 LSCC WGS tissue_normal CPT0191750009 3d635e4b-4492-423c-9c73-64d6049459b1_wgs_gdc_realn.bam 94772144631 BAM harmonized CPTAC3 a0179fa2-781e-404e-bc4e-a18ef1a56c5c 7e1c79f2621b94d2eb2580bbd9c2d71e {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.WGS.N C3L-02625 LSCC WGS blood_normal CPT0191850005 CPT0191850005.WholeGenome.RP-1303.bam 55070268209 BAM submitted_aligned CPTAC3 c714421c-9661-4777-b9e8-6707693d3c34 56f4a2e4fbba8c58378de51ab1a21823 {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02625.WGS.N.hg38 C3L-02625 LSCC WGS blood_normal CPT0191850005 0a96746b-2a5a-4b98-9b2e-7d3207b988fd_wgs_gdc_realn.bam 78884685977 BAM harmonized CPTAC3 020dc66a-179f-4169-a126-39220d939638 7ee081977d12f8e5efbd896cd89bdaaf {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02625.WGS.T C3L-02625 LSCC WGS tumor CPT0191710006 CPT0191710006.WholeGenome.RP-1303.bam 65592718773 BAM submitted_aligned CPTAC3 4aa28d3e-f756-42cf-99aa-5c8f3e4f9401 67a79fc4fb9e79489748f2c540546f96 {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.WGS.T.hg38 C3L-02625 LSCC WGS tumor CPT0191710006 55194cd1-6ee4-4c6c-ab7e-ff73a429a1a9_wgs_gdc_realn.bam 97566477168 BAM harmonized CPTAC3 1f0e16a9-631d-4c09-9bc3-34ec395d7ce3 b38c79e82c25d53a50950cd2351311c2 {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.WXS.A C3L-02625 LSCC WXS tissue_normal CPT0191750009 CPT0191750009.WholeExome.RP-1303.bam 27423755743 BAM submitted_aligned CPTAC3 0e2b170b-06ca-4f6a-9650-4db1c1053a59 170184920d15f8ba0cce392d602f4904 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.WXS.A.hg38 C3L-02625 LSCC WXS tissue_normal CPT0191750009 3d635e4b-4492-423c-9c73-64d6049459b1_wxs_gdc_realn.bam 38268225866 BAM harmonized CPTAC3 54003886-44e6-4edd-98ed-e3098639a46e f95caadce812779db2d77457de088ee6 {"aliquot_tag": "ALQ_1abd5c7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02625.WXS.N C3L-02625 LSCC WXS blood_normal CPT0191850005 CPT0191850005.WholeExome.RP-1303.bam 21572301343 BAM submitted_aligned CPTAC3 3b022d22-1a43-49c7-bf5a-474591470087 54d4f617f0764ea86f1c4884de1b8d3d {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02625.WXS.N.hg38 C3L-02625 LSCC WXS blood_normal CPT0191850005 0a96746b-2a5a-4b98-9b2e-7d3207b988fd_wxs_gdc_realn.bam 29276956433 BAM harmonized CPTAC3 2f6f9af5-6508-440e-8574-4a543fe0a178 be0365b08665270ee11879897a260a16 {"aliquot_tag": "ALQ_e25da283", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02625.WXS.T C3L-02625 LSCC WXS tumor CPT0191710006 CPT0191710006.WholeExome.RP-1303.bam 26514868958 BAM submitted_aligned CPTAC3 6f24da77-0ea6-403f-b6e2-f121d9581eb6 54ca1b22271aecc72b799ef0efe284ec {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02625.WXS.T.hg38 C3L-02625 LSCC WXS tumor CPT0191710006 55194cd1-6ee4-4c6c-ab7e-ff73a429a1a9_wxs_gdc_realn.bam 35995008962 BAM harmonized CPTAC3 c68a5bf3-4377-43a7-8f93-42ecd178bc3c 3bb2a4bddb8cc7e0432f98c21b6dc28f {"aliquot_tag": "ALQ_7f82e72c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.MethArray.Green.A C3L-02627 LSCC Methylation_Array tissue_normal CPT0202040006 203219670066_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1c3e1673-e8c0-4e37-83ef-442cd2429ff6 4996ea1f567ebf945d1f1a7e867c7a3e {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.MethArray.Green.T C3L-02627 LSCC Methylation_Array tumor CPT0202020011 203219720176_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bbbb3ff9-ffe3-4ed5-9d16-07e42dee6bc6 c0e1dbfbd18aab1bd377627c8a224e9f {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.MethArray.Red.A C3L-02627 LSCC Methylation_Array tissue_normal CPT0202040006 203219670066_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 33b5f2ac-2491-488f-9097-aa2a4513ae73 831db0059632dff8fabaf51354beba84 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.MethArray.Red.T C3L-02627 LSCC Methylation_Array tumor CPT0202020011 203219720176_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 28974841-7910-4fb1-aef5-ec3582c82bac 6769c8a548de2595c171e49999c2385b {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.miRNA-Seq.A.hg38 C3L-02627 LSCC miRNA-Seq tissue_normal CPT0202040009 279d6829-9610-4b33-bba1-0de894404c68_mirnaseq_gdc_realn.bam 224904762 BAM harmonized CPTAC3 f52d9858-6e61-46ac-abd6-bd430d36de9d dbc29349eb09d6f48cea72736d6e0616 {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.miRNA-Seq.S19_L001_R1.T C3L-02627 LSCC miRNA-Seq tumor CPT0202020014 190206_UNC31-K00269_0191_AH2WY5BBXY_CACTCA_S19_L001_R1_001.unaln.bam 188769947 BAM S19_L001_R1 submitted_unaligned CPTAC3 9befded7-bbe2-4ffa-b80f-292d2aca1a78 1fa4c87c89ed0a4e90eb99392527ca71 {"aliquot_tag": "ALQ_c518c05a", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.miRNA-Seq.S47_L004_R1.A C3L-02627 LSCC miRNA-Seq tissue_normal CPT0202040009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGATGT_S47_L004_R1_001.unaln.bam 198454448 BAM S47_L004_R1 submitted_unaligned CPTAC3 8720ffef-260c-4db0-9b9e-574a72d5f757 4b56ffb8d01c0d2be41b0cc17221e8fd {"aliquot_tag": "ALQ_2df27806", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.miRNA-Seq.T.hg38 C3L-02627 LSCC miRNA-Seq tumor CPT0202020014 c127d63f-ae47-408c-b5c1-6d766c42d7c6_mirnaseq_gdc_realn.bam 211587056 BAM harmonized CPTAC3 f769ccb7-b53c-458c-9cad-5933424076bf 7f864edd47379cebc98d0efcc73353eb {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.RNA-Seq.chimeric.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.chimeric.gdc_realn.bam 65993189 BAM chimeric harmonized CPTAC3 a5deba80-218c-4378-9ae4-58997ff1ea85 4f67590dc65c6a4c36e99423c4e1c207 {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.RNA-Seq.chimeric.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.chimeric.gdc_realn.bam 287110191 BAM chimeric harmonized CPTAC3 6a5e3b57-d8a4-422f-ae6f-ef25464279b0 182a0f089b113940f7fe6a5dbd974c12 {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.RNA-Seq.genomic.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.genomic.gdc_realn.bam 8134397245 BAM genomic harmonized CPTAC3 c59485b2-4c17-43df-b2cb-5658d9c3b921 5adedde3542fb9fc803b8e0405b3959a {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.RNA-Seq.genomic.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.genomic.gdc_realn.bam 7986992531 BAM genomic harmonized CPTAC3 08691b35-e66f-4de2-9171-733121628003 18d38d72e72e0e01b0ba595f7b2983e7 {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.RNA-Seq.S22_L007_R1.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R1_001.fastq.gz 3920327205 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 fbada907-d74d-4ca1-9f34-ee73a0dba9d6 59737002c9fc1ba9f4e5cb1e1bec9124 {"aliquot_tag": "ALQ_2df27806", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.RNA-Seq.S22_L007_R2.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R2_001.fastq.gz 4177765336 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 3653291b-d499-455b-8567-429fc2470f86 dbeec35c7836cbe9e7c7393584c41d57 {"aliquot_tag": "ALQ_2df27806", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.RNA-Seq.S24_L006_R1.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3449870478 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 06fdf88a-5317-432c-861d-a33566c8289d ed915cbb9d148970310e50e7ae2bdbff {"aliquot_tag": "ALQ_c518c05a", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.RNA-Seq.S24_L006_R2.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3772929069 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 f7775c82-5064-4aa9-b045-ef1acd72e1e7 271acb971eb60fce2ed097532efd0ec8 {"aliquot_tag": "ALQ_c518c05a", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.RNA-Seq.transcriptome.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.transcriptome.gdc_realn.bam 8755648171 BAM transcriptome harmonized CPTAC3 1595eeba-3c99-4527-8344-48706369337b 5a8d6ca3f58b2a2c5fe00c464193eb33 {"aliquot_tag": "ALQ_2df27806", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.RNA-Seq.transcriptome.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.transcriptome.gdc_realn.bam 9752846783 BAM transcriptome harmonized CPTAC3 c3ed99ea-6ac6-4147-859f-65789fbfbca2 37b9b1510c84f3cdc32f2574ac2df6b2 {"aliquot_tag": "ALQ_c518c05a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.WGS.A C3L-02627 LSCC WGS tissue_normal CPT0202040006 CPT0202040006.WholeGenome.RP-1303.bam 56787159670 BAM submitted_aligned CPTAC3 238ae579-f251-40bb-a23c-c6a03ca46853 dd3712f2a4c7250605d279f63eded3c1 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.WGS.A.hg38 C3L-02627 LSCC WGS tissue_normal CPT0202040006 d7371f00-8697-4a03-ba6f-8a87c790aaea_wgs_gdc_realn.bam 82406035207 BAM harmonized CPTAC3 bb075bbc-e4d4-4332-9475-26592fc857db 2862a1d5edd37e7b1d292cb725fc0ef8 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.WGS.N C3L-02627 LSCC WGS blood_normal CPT0202150002 CPT0202150002.WholeGenome.RP-1303.bam 54442253124 BAM submitted_aligned CPTAC3 9c35e39d-99bd-4e74-a44c-56381468eff1 93e9c4da44b0d0928a7852e350871a44 {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02627.WGS.N.hg38 C3L-02627 LSCC WGS blood_normal CPT0202150002 5ef6c53e-92c4-4938-add5-99d12373b127_wgs_gdc_realn.bam 77925801567 BAM harmonized CPTAC3 ef6b3cab-f35e-4315-8762-b289ca547298 3e8970effbf593c9aff921415935be6b {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02627.WGS.T C3L-02627 LSCC WGS tumor CPT0202020011 CPT0202020011.WholeGenome.RP-1303.bam 59089596391 BAM submitted_aligned CPTAC3 65cea423-d231-4e81-8379-72b177bdc466 cc27e10d0639778cef5639bc466e69b6 {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.WGS.T.hg38 C3L-02627 LSCC WGS tumor CPT0202020011 99cc8223-ac71-4ad0-bbe4-f1e683686c6d_wgs_gdc_realn.bam 83456753519 BAM harmonized CPTAC3 70088342-ad1b-4309-9861-5c4c965319aa 35d9de99e8cbd783bb141855cbd56024 {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.WXS.A C3L-02627 LSCC WXS tissue_normal CPT0202040006 CPT0202040006.WholeExome.RP-1303.bam 27166247907 BAM submitted_aligned CPTAC3 97506b76-b751-46df-84d0-7b6618728641 1ed19fa8fc738733113e1cb91c6617c0 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.WXS.A.hg38 C3L-02627 LSCC WXS tissue_normal CPT0202040006 d7371f00-8697-4a03-ba6f-8a87c790aaea_wxs_gdc_realn.bam 36979083966 BAM harmonized CPTAC3 66aa5fba-3313-48f7-a2cb-6854fc841364 7800dcf0d42b6a258d3ba47a3b6bfc30 {"aliquot_tag": "ALQ_bd4d6597", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02627.WXS.N C3L-02627 LSCC WXS blood_normal CPT0202150002 CPT0202150002.WholeExome.RP-1303.bam 29747826866 BAM submitted_aligned CPTAC3 ca83277d-0bd8-4011-95fb-c6e2d48cd3dd 5712f37b0299aa03ed24d4055be9c10f {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02627.WXS.N.hg38 C3L-02627 LSCC WXS blood_normal CPT0202150002 5ef6c53e-92c4-4938-add5-99d12373b127_wxs_gdc_realn.bam 40790098816 BAM harmonized CPTAC3 aea309eb-a90e-42aa-9be6-30c600769711 b25aa68bf72fd8e270460a1056bc13f9 {"aliquot_tag": "ALQ_4c1c5b9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02627.WXS.T C3L-02627 LSCC WXS tumor CPT0202020011 CPT0202020011.WholeExome.RP-1303.bam 30361272443 BAM submitted_aligned CPTAC3 99d8136e-670a-4738-9432-410721e7a101 531e93c423ed350a171d7a613f486d2c {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02627.WXS.T.hg38 C3L-02627 LSCC WXS tumor CPT0202020011 99cc8223-ac71-4ad0-bbe4-f1e683686c6d_wxs_gdc_realn.bam 41574623283 BAM harmonized CPTAC3 48780329-8ba0-439a-a720-13c3213bc925 9bc71de754699b02211471ccfab0c3f0 {"aliquot_tag": "ALQ_b57234d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.MethArray.Green.A C3L-02629 LSCC Methylation_Array tissue_normal CPT0202220007 203219760065_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 af203d49-2cc9-40e0-a247-dc364403c777 eed40e75a332b1752058b67498cae67d {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.MethArray.Green.T C3L-02629 LSCC Methylation_Array tumor CPT0202170006 203219650127_R04C01_Grn.idat 13676217 IDAT Green NA CPTAC3 f13155d9-3e9d-44bd-be7e-56ee9d9ab3f6 134af8e8f2a0a6a34c596525f51cc740 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.MethArray.Red.A C3L-02629 LSCC Methylation_Array tissue_normal CPT0202220007 203219760065_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 c4a1b09c-db9b-4072-a62e-79337252fb53 a7686a0dbf232687c9220bdfefec566b {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.MethArray.Red.T C3L-02629 LSCC Methylation_Array tumor CPT0202170006 203219650127_R04C01_Red.idat 13676217 IDAT Red NA CPTAC3 2d31692b-8859-44cb-8ce4-c28e9a44cb43 2cc1b80e18dbe351f4d6846cc190bbf6 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.miRNA-Seq.A.hg38 C3L-02629 LSCC miRNA-Seq tissue_normal CPT0202220010 c8a78037-4a0e-466e-8f5e-11a158a1af0a_mirnaseq_gdc_realn.bam 217170392 BAM harmonized CPTAC3 cb014ba4-e9b1-4706-89cc-dbc6ea84e31d 1ae116e3104764217fcd91092f2bfb02 {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.miRNA-Seq.S18_L001_R1.T C3L-02629 LSCC miRNA-Seq tumor CPT0202170009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGGCG_S18_L001_R1_001.unaln.bam 159836036 BAM S18_L001_R1 submitted_unaligned CPTAC3 013d94f0-fa5c-42aa-9b4e-5d225fa541a3 c9313c8a2afc34694b8815779df01bd5 {"aliquot_tag": "ALQ_a10ed173", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.miRNA-Seq.S46_L004_R1.A C3L-02629 LSCC miRNA-Seq tissue_normal CPT0202220010 190206_UNC31-K00269_0191_AH2WY5BBXY_TTAGGC_S46_L004_R1_001.unaln.bam 195060644 BAM S46_L004_R1 submitted_unaligned CPTAC3 4264a349-f21a-4b88-b00b-1fff76ea9ecd 9404c3e0de999b96e49accaaf977b4fb {"aliquot_tag": "ALQ_8fbda548", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.miRNA-Seq.T.hg38 C3L-02629 LSCC miRNA-Seq tumor CPT0202170009 4cc50975-5588-490d-8fc2-1b6dc3777764_mirnaseq_gdc_realn.bam 175699702 BAM harmonized CPTAC3 c83355f8-8404-40da-88e0-eee2746c1ef1 90771ddd34668587d2a9d0b480853390 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.RNA-Seq.chimeric.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.chimeric.gdc_realn.bam 60124755 BAM chimeric harmonized CPTAC3 76c0cbc8-d4c0-4942-a49d-0fd5b966d868 9372ce93d2f32892951b654f460f0ebd {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.RNA-Seq.chimeric.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.chimeric.gdc_realn.bam 123782511 BAM chimeric harmonized CPTAC3 63bebd41-349b-43df-a6ac-0216541484b0 cbea6adde52184f7ce2e27e00c41e3a1 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.RNA-Seq.genomic.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.genomic.gdc_realn.bam 7717172543 BAM genomic harmonized CPTAC3 27854c5a-1753-458d-a52a-951d91509ec0 f8752d03b34e9b5bba49e964451f6837 {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.RNA-Seq.genomic.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.genomic.gdc_realn.bam 9778814371 BAM genomic harmonized CPTAC3 54a5e126-f56b-45bb-a663-4d544898ed8f 6e939b140f7f116c0cd5325134e84bd0 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.RNA-Seq.S23_L007_R1.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R1_001.fastq.gz 3529518354 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 82e7b413-d581-4842-b166-c4151b876f26 897cfa202746eb81d18c6d6d4e782b6e {"aliquot_tag": "ALQ_8fbda548", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.RNA-Seq.S23_L007_R2.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R2_001.fastq.gz 3795486983 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 d43fb6ff-5fdf-4c7d-980a-36751852488a b6ee2043675a612cf41c6dd8ddcb9d1d {"aliquot_tag": "ALQ_8fbda548", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.RNA-Seq.S2_L001_R1.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R1_001.fastq.gz 4073208240 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 01819a3f-5ba5-4885-a6ed-1a6e2ad9b18c cb3efd6744c1d13503407f4f81b1108f {"aliquot_tag": "ALQ_a10ed173", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.RNA-Seq.S2_L001_R2.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R2_001.fastq.gz 4553845696 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 d571cdec-01e1-4674-8842-18f97f51ba8e 12837bdcd1323c78b00505d9e68176b4 {"aliquot_tag": "ALQ_a10ed173", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.RNA-Seq.transcriptome.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.transcriptome.gdc_realn.bam 8184674017 BAM transcriptome harmonized CPTAC3 6a88ffcf-9474-4e81-8ab2-ea07dd594612 6d9408d811391ced0c257bc0a77cfd8b {"aliquot_tag": "ALQ_8fbda548", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.RNA-Seq.transcriptome.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.transcriptome.gdc_realn.bam 10903464294 BAM transcriptome harmonized CPTAC3 c018859f-90f7-437c-b317-f8ac19481377 31fac948fe8fbeb8d7ea802cc9bbe531 {"aliquot_tag": "ALQ_a10ed173", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.WGS.A C3L-02629 LSCC WGS tissue_normal CPT0202220007 CPT0202220007.WholeGenome.RP-1303.bam 58574571733 BAM submitted_aligned CPTAC3 535f75b8-77db-4e5f-8b9c-f05361e8787d 33b37e0e1e792423d8871972f6b47975 {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.WGS.A.hg38 C3L-02629 LSCC WGS tissue_normal CPT0202220007 0fe4767b-76e5-4b00-ac44-8396e660e293_wgs_gdc_realn.bam 86449032257 BAM harmonized CPTAC3 4bc1bedc-2686-49c2-b393-10e60d4c896c 68903703e9f3ba25d30010e6de55083e {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.WGS.N C3L-02629 LSCC WGS blood_normal CPT0202330002 CPT0202330002.WholeGenome.RP-1303.bam 60772617878 BAM submitted_aligned CPTAC3 6a09cd56-af63-4429-81af-a3545ba4b869 3dd453736e09ade807b35dfe8206aad6 {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02629.WGS.N.hg38 C3L-02629 LSCC WGS blood_normal CPT0202330002 bf479ce0-c55c-4c56-bf9c-67c949a3fb06_wgs_gdc_realn.bam 87870129416 BAM harmonized CPTAC3 ac7e6d30-242f-4c4a-9482-1c53fdd54e57 f6e358a1f315a34d7248690247c5e076 {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02629.WGS.T C3L-02629 LSCC WGS tumor CPT0202170006 CPT0202170006.WholeGenome.RP-1303.bam 64404138440 BAM submitted_aligned CPTAC3 785d8e57-c9a0-45b8-b01b-9814ffdd2274 e7def8ea950996ad2f32ac3bbc81cf96 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.WGS.T.hg38 C3L-02629 LSCC WGS tumor CPT0202170006 03fcf9b5-9cc3-4f38-b28b-f6fd65bab61e_wgs_gdc_realn.bam 92464028310 BAM harmonized CPTAC3 38b75c50-e5ad-43a5-83d8-642eb3c2db80 08f221383a6eab3d55fe6f13bfef3d6c {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.WXS.A C3L-02629 LSCC WXS tissue_normal CPT0202220007 CPT0202220007.WholeExome.RP-1303.bam 20511603726 BAM submitted_aligned CPTAC3 737bb422-a6e9-43e4-b8a0-2ff3f3902cc8 66b45827101d042a9845efdc61f1eb6d {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.WXS.A.hg38 C3L-02629 LSCC WXS tissue_normal CPT0202220007 0fe4767b-76e5-4b00-ac44-8396e660e293_wxs_gdc_realn.bam 28587679530 BAM harmonized CPTAC3 6d99b57e-0eaa-4bdb-bdc5-3a645decd39f 51354613f2268cf5fd8f93afb66f1b25 {"aliquot_tag": "ALQ_8c201aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02629.WXS.N C3L-02629 LSCC WXS blood_normal CPT0202330002 CPT0202330002.WholeExome.RP-1303.bam 24100668225 BAM submitted_aligned CPTAC3 815be893-2c84-4196-a37b-23db5597c696 e1abbe09dbc2f59dc86dc0db325a5a93 {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02629.WXS.N.hg38 C3L-02629 LSCC WXS blood_normal CPT0202330002 bf479ce0-c55c-4c56-bf9c-67c949a3fb06_wxs_gdc_realn.bam 33360412160 BAM harmonized CPTAC3 899cf82a-0664-4a9b-9b46-03a762cbfef6 3796c430e38e087dad5485f75f67ac9c {"aliquot_tag": "ALQ_8e940f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02629.WXS.T C3L-02629 LSCC WXS tumor CPT0202170006 CPT0202170006.WholeExome.RP-1303.bam 18998295339 BAM submitted_aligned CPTAC3 a93d19e8-29d1-44a6-8a30-16aeedb3c153 75a51dedd5c72cbadc3983bb08b24f0d {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02629.WXS.T.hg38 C3L-02629 LSCC WXS tumor CPT0202170006 03fcf9b5-9cc3-4f38-b28b-f6fd65bab61e_wxs_gdc_realn.bam 26676891735 BAM harmonized CPTAC3 51e541b7-9f04-40ff-8dc6-9221d1fc1089 2bdcb9f978f9ce603f76b0d11b848042 {"aliquot_tag": "ALQ_31b1cce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.MethArray.Green.T C3L-02642 GBM Methylation_Array tumor CPT0201710006 203219640102_R06C01_Grn.idat 13676219 IDAT Green NA CPTAC3 8e75a75b-fe3b-4958-883c-d24ecfcfc10d d7a98c549dd1746b5060b5846686f763 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.MethArray.Red.T C3L-02642 GBM Methylation_Array tumor CPT0201710006 203219640102_R06C01_Red.idat 13676219 IDAT Red NA CPTAC3 fe8e25ab-0fd5-4ceb-836b-12fc49f8d43e 0c76618b178f1a824c72152fbfe9db43 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.miRNA-Seq.S12_L007_R1.T C3L-02642 GBM miRNA-Seq tumor CPT0201710009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L007_R1_001.unaln.bam 311179903 BAM S12_L007_R1 submitted_unaligned CPTAC3 6fc858be-fcf9-488d-a4f5-694573260ec3 b0365c784f5bf0f4ffa75637d1050fe3 {"aliquot_tag": "ALQ_c9ffdd53", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.miRNA-Seq.T.hg38 C3L-02642 GBM miRNA-Seq tumor CPT0201710009 109d7654-7e6a-4b17-8f82-b16379140f86_mirnaseq_gdc_realn.bam 352589709 BAM harmonized CPTAC3 a38f69af-c019-4904-a100-da6dbe8c6e12 13c70c706e228936dc2f30e415b5e014 {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.RNA-Seq.chimeric.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.chimeric.gdc_realn.bam 44624439 BAM chimeric harmonized CPTAC3 2382fe10-9e84-40f0-bec5-b990d2734cce 336bd6044aaebe8e074183c94a9837ae {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.RNA-Seq.genomic.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.genomic.gdc_realn.bam 7699433886 BAM genomic harmonized CPTAC3 ef9146e5-ec71-44ad-b084-63f2aefde6c7 650ee79fa1b65fbecd05f705536d5cca {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.RNA-Seq.S13_L004_R1.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3672568158 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 4334c783-04ef-40ab-9904-68713ce55e58 6ff4c67622aae847cd459fab6c4012e4 {"aliquot_tag": "ALQ_c9ffdd53", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.RNA-Seq.S13_L004_R2.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3778707964 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 7cc72175-22fd-41bc-a316-523ce9741ad2 959d86c6c2b45535421dab642ada0e53 {"aliquot_tag": "ALQ_c9ffdd53", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.RNA-Seq.transcriptome.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.transcriptome.gdc_realn.bam 9171466128 BAM transcriptome harmonized CPTAC3 16110ff2-eaca-4941-8238-b19d31bacba6 1e0605a4fdbaf2e5be701d6545442505 {"aliquot_tag": "ALQ_c9ffdd53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.WGS.N C3L-02642 GBM WGS blood_normal CPT0201790002 CPT0201790002.WholeGenome.RP-1303.bam 67862526661 BAM submitted_aligned CPTAC3 771c1507-2100-4447-b0f0-626321e4e281 8a7fc95cc0270acd0156352334e6fa12 {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02642.WGS.N.hg38 C3L-02642 GBM WGS blood_normal CPT0201790002 e4bcfb72-dad1-4bc8-93d0-d813e1f4d518_wgs_gdc_realn.bam 99147007103 BAM harmonized CPTAC3 6a033ca3-1a89-4818-9753-e11146c7efa7 31f6be535151732484b6501fd792047f {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02642.WGS.T C3L-02642 GBM WGS tumor CPT0201710006 CPT0201710006.WholeGenome.RP-1303.bam 57205910103 BAM submitted_aligned CPTAC3 c77de080-567b-46ff-807a-7b2690986d5b df3fd994bc6633f707959dd19670eeb8 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.WGS.T.hg38 C3L-02642 GBM WGS tumor CPT0201710006 0e2478b9-f3b8-4b16-a88a-60fb7ebd30db_wgs_gdc_realn.bam 84095405766 BAM harmonized CPTAC3 7f184872-61e0-4f80-8648-06a2250657ec 1863448f3ef02455e12ab4b12caf987e {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.WXS.N C3L-02642 GBM WXS blood_normal CPT0201790002 CPT0201790002.WholeExome.RP-1303.bam 22664492576 BAM submitted_aligned CPTAC3 9497a007-0744-4012-9340-6e72469a3b90 dd643c43d7b25a7ecf637f0c6dd4ca94 {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02642.WXS.N.hg38 C3L-02642 GBM WXS blood_normal CPT0201790002 e4bcfb72-dad1-4bc8-93d0-d813e1f4d518_wxs_gdc_realn.bam 30981065082 BAM harmonized CPTAC3 4322defa-c5c1-415a-897a-e74645aebfc2 47275b68a23459a100b83ad6a3de0f72 {"aliquot_tag": "ALQ_6e5d4f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02642.WXS.T C3L-02642 GBM WXS tumor CPT0201710006 CPT0201710006.WholeExome.RP-1303.bam 33972712303 BAM submitted_aligned CPTAC3 f4cedea4-c592-48c5-9704-03117b4f0ac8 bf0ba1a68eaed1c4c0b6ae61d7a04bb8 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02642.WXS.T.hg38 C3L-02642 GBM WXS tumor CPT0201710006 0e2478b9-f3b8-4b16-a88a-60fb7ebd30db_wxs_gdc_realn.bam 46623477935 BAM harmonized CPTAC3 03f5eee8-1996-44ee-90dc-7315d8d3a224 8c9a3bccbc8b6798cc5ba5f67edbefd0 {"aliquot_tag": "ALQ_5940c0c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.MethArray.Green.A C3L-02643 LUAD Methylation_Array tissue_normal CPT0204490006 203273630258_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e9d2ac29-c2ae-4a86-a2ed-8ed0b192ee9d cd4b370a717a91260f997622bc72bab8 {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.MethArray.Green.T C3L-02643 LUAD Methylation_Array tumor CPT0204430007 203561620087_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 262aa966-a02c-4a5e-8a1c-925815d3148c 25d651f647e75346235eb50e4ef92375 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.MethArray.Red.A C3L-02643 LUAD Methylation_Array tissue_normal CPT0204490006 203273630258_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 f1fdcbfd-18e3-4c81-82e0-91cbb6a859a0 4273cdc749ef0e47129d48a274f2ec2f {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.MethArray.Red.T C3L-02643 LUAD Methylation_Array tumor CPT0204430007 203561620087_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f7d09def-374e-42d8-859d-45721be34a24 62a807cf10e9493da7df481f0a5a0aa2 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.miRNA-Seq.A.hg38 C3L-02643 LUAD miRNA-Seq tissue_normal CPT0204490009 1648ff02-786c-4a70-ad02-d4bb6835f318_mirnaseq_gdc_realn.bam 215705545 BAM harmonized CPTAC3 e74903f5-db0c-4b23-88a9-6412d67766d2 a711b17d1f5c8c4a53c18c34a1a43201 {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.miRNA-Seq.S23_L006_R1.A C3L-02643 LUAD miRNA-Seq tissue_normal CPT0204490009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATTCCT_S23_L006_R1_001.unaln.bam 190522527 BAM S23_L006_R1 submitted_unaligned CPTAC3 a4348dfd-2658-4c0d-8e04-bdd0f45d1c69 2d54c97766b799a74051a2e3924928a5 {"aliquot_tag": "ALQ_2d23cb9b", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.miRNA-Seq.S25_L004_R1.T C3L-02643 LUAD miRNA-Seq tumor CPT0204430010 190722_UNC31-K00269_0234_AH7VGTBBXY_CACGAT_S25_L004_R1_001.unaln.bam 210928658 BAM S25_L004_R1 submitted_unaligned CPTAC3 ca70e9db-1b5b-49c7-91d9-4d3c0e1f6505 e7672adf82470cd2e784d80411f72f25 {"aliquot_tag": "ALQ_7545adf", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.miRNA-Seq.T.hg38 C3L-02643 LUAD miRNA-Seq tumor CPT0204430010 39c56742-7820-4d53-bb49-6786922ef335_mirnaseq_gdc_realn.bam 230746522 BAM harmonized CPTAC3 43ba203f-eb21-477a-b6fb-60b230dd5a96 1ea46dcf6855d9e09d4f2febc7f5f146 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.RNA-Seq.chimeric.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.chimeric.gdc_realn.bam 28625694 BAM chimeric harmonized CPTAC3 ede54f48-7b5f-46e0-8408-f05738e2a65c fe34f7e1ca606423bf0fc413b462ebc1 {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.RNA-Seq.chimeric.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.chimeric.gdc_realn.bam 23559629 BAM chimeric harmonized CPTAC3 c0bb4856-1e12-42a5-bce8-9a000344fbdd d25818200cd1b2faa1177e7f5082c495 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.RNA-Seq.genomic.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.genomic.gdc_realn.bam 10435622568 BAM genomic harmonized CPTAC3 bc05b97f-70cb-45d7-a00e-6d6bbdb3afb2 6878b3fefa7da7909fbdff8529c761c2 {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.RNA-Seq.genomic.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.genomic.gdc_realn.bam 10843237123 BAM genomic harmonized CPTAC3 328ea0fc-e532-4d99-9f71-c37e01b9ffdb ff5b695612366cd845fac758fb439ed0 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.RNA-Seq.S19_L005_R1.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R1_001.fastq.gz 4036861909 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 6383ee73-3338-4b7e-8969-1df003fb8f2a f63b75738d779e4d7be7c66dc11bd2fd {"aliquot_tag": "ALQ_2d23cb9b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.RNA-Seq.S19_L005_R2.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R2_001.fastq.gz 4514638201 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 92f0abf9-21bf-4dd3-a3ad-83c13df95348 4d1c6399ed1649d015e4828297bfb9e9 {"aliquot_tag": "ALQ_2d23cb9b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.RNA-Seq.S27_L007_R1.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R1_001.fastq.gz 3293591724 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 34430823-5630-4f94-80ed-4191d1abd67d 6f1c76fc37528f8307b7c9be10976e43 {"aliquot_tag": "ALQ_7545adf", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.RNA-Seq.S27_L007_R2.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R2_001.fastq.gz 3580550859 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 55901808-5e7b-49b8-8741-2b461333176d cded07fc0578d9b3fe613045929512a4 {"aliquot_tag": "ALQ_7545adf", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.RNA-Seq.transcriptome.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.transcriptome.gdc_realn.bam 8479880546 BAM transcriptome harmonized CPTAC3 c2d3f033-8ae8-4062-a158-6285720cfb2d 02b09333922118b9b56db4e7ef0ad21a {"aliquot_tag": "ALQ_2d23cb9b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.RNA-Seq.transcriptome.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.transcriptome.gdc_realn.bam 6689127162 BAM transcriptome harmonized CPTAC3 b93b03a0-e85c-4278-ac7c-561c90581e95 4389edb737583044c6f68757d80e8140 {"aliquot_tag": "ALQ_7545adf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.WGS.N C3L-02643 LUAD WGS blood_normal CPT0204570002 CPT0204570002.WholeGenome.RP-1303.bam 67474004442 BAM submitted_aligned CPTAC3 e3960815-0ec8-4400-b5e6-bf216faed4bd 4aa8f2471fb1efbd2dd9575bd771e456 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02643.WGS.N.hg38 C3L-02643 LUAD WGS blood_normal CPT0204570002 51166242-6b89-4ecc-8879-769715f7f8c0_wgs_gdc_realn.bam 97542442181 BAM harmonized CPTAC3 f35ae767-3271-40d7-b2ec-0904342aa2b2 1e07623b05392841ff88ac950e4c9586 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02643.WGS.T C3L-02643 LUAD WGS tumor CPT0204430007 CPT0204430007.WholeGenome.RP-1303.bam 90180390370 BAM submitted_aligned CPTAC3 0b6f9a35-5974-4c6d-a117-9a99ad450687 beae574f63d13aa18067ca76a7427187 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.WGS.T.hg38 C3L-02643 LUAD WGS tumor CPT0204430007 6d8f8127-ca6c-4e64-9d5f-a92bc489b9e8_wgs_gdc_realn.bam 130965569768 BAM harmonized CPTAC3 d0e4e6cf-7c6a-43a4-9faa-d1863187b918 cf896798cf12212b1da2148a9ab517f0 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.WXS.A C3L-02643 LUAD WXS tissue_normal CPT0204490006 CPT0204490006.WholeExome.RP-1303.bam 20056843006 BAM submitted_aligned CPTAC3 42c5bfde-4e76-4806-ab87-4ea72804180d 8a0dd95bafefae8c3909bfd7f32e7c76 {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.WXS.A.hg38 C3L-02643 LUAD WXS tissue_normal CPT0204490006 7700dccb-869e-425e-8adc-853380b0937a_wxs_gdc_realn.bam 27710316576 BAM harmonized CPTAC3 568e6ad2-5b74-46b6-8adc-cb9236f72619 dc36ca1392e99d648288cf59b7c46382 {"aliquot_tag": "ALQ_bd9cd60a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02643.WXS.N C3L-02643 LUAD WXS blood_normal CPT0204570002 CPT0204570002.WholeExome.RP-1303.bam 22087432943 BAM submitted_aligned CPTAC3 1ea65c26-0042-4104-9472-a7b7de6165c1 4884c31deabb827caf484a9e8b900164 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02643.WXS.N.hg38 C3L-02643 LUAD WXS blood_normal CPT0204570002 51166242-6b89-4ecc-8879-769715f7f8c0_wxs_gdc_realn.bam 30506946079 BAM harmonized CPTAC3 5099a7f9-cdfc-4fa9-949f-7461f7e52f22 22e0af98e5773250a423ef716d6c1090 {"aliquot_tag": "ALQ_ce9d7fd7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02643.WXS.T C3L-02643 LUAD WXS tumor CPT0204430007 CPT0204430007.WholeExome.RP-1303.bam 20260634047 BAM submitted_aligned CPTAC3 f28d03f7-a2e3-4831-a12b-ef81054b05f7 b2614df6904ac148b279a9ee2af2ee29 {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02643.WXS.T.hg38 C3L-02643 LUAD WXS tumor CPT0204430007 6d8f8127-ca6c-4e64-9d5f-a92bc489b9e8_wxs_gdc_realn.bam 28268902693 BAM harmonized CPTAC3 115bc719-1999-4d63-b788-a2e2107430d3 115f8f9361102de70673311a00a7597b {"aliquot_tag": "ALQ_802bfe3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02644.MethArray.Green.T C3L-02644 GBM Methylation_Array tumor CPT0227810007 204367490093_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6d87bace-c3c9-4958-9143-6a34d0362044 633c529954a66450f9083c7b5a01ed0d {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.MethArray.Red.T C3L-02644 GBM Methylation_Array tumor CPT0227810007 204367490093_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 dcf2f0e2-ff58-406c-97e3-d757907bcd11 ff4097dd3e1dedf8f54eb32858463177 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.miRNA-Seq.S40_L002_R1.T C3L-02644 GBM miRNA-Seq tumor CPT0227810010 200403_UNC31-K00269_0274_AHCF7GBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 198821121 BAM S40_L002_R1 submitted_unaligned CPTAC3 827c1489-052e-4eef-a733-e76d03044ff1 95f572043d34346a5c9f22aff3d40a67 {"aliquot_tag": "ALQ_799bd424", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.miRNA-Seq.T.hg38 C3L-02644 GBM miRNA-Seq tumor CPT0227810010 0fa0e305-2995-463b-b909-bec0df468cb0_mirnaseq_gdc_realn.bam 222417745 BAM harmonized CPTAC3 9db07d7e-0f32-423c-83d6-e1ae2d3d3d0b e57d81f01b57a4d9d3e54262b0f93763 {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.RNA-Seq.chimeric.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.chimeric.gdc_realn.bam 266762654 BAM chimeric harmonized CPTAC3 d61c2bfe-fd5d-4a78-b58e-bec74b2d46c0 bc9715d900895fbd90d40ea41a01e18b {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.RNA-Seq.genomic.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.genomic.gdc_realn.bam 8695476013 BAM genomic harmonized CPTAC3 29437f61-e40c-47f1-9782-88da36e536c8 a272cda4502ac932bbb72fa34209d475 {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.RNA-Seq.S8_L002_R1.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R1_001.fastq.gz 3584181669 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 e7a4ea3c-9561-401b-9378-7ec621b038ea 5620b26bba1e17463c8c58ec7d352c0f {"aliquot_tag": "ALQ_799bd424", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.RNA-Seq.S8_L002_R2.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 10aec24b-bc0f-4ee3-9179-a94b8da520f4 859d04392f23dbf23daffd5bdbb09f65 {"aliquot_tag": "ALQ_799bd424", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.RNA-Seq.transcriptome.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.transcriptome.gdc_realn.bam 8673036127 BAM transcriptome harmonized CPTAC3 4f25a100-9573-4d08-b27e-fe302d7af266 e6ba417d7545f034b3956490d02dddb2 {"aliquot_tag": "ALQ_799bd424", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.WGS.N C3L-02644 GBM WGS blood_normal CPT0227900002 CPT0227900002.WholeGenome.RP-2158.bam 26226631010 BAM submitted_aligned CPTAC3 91b131b2-0290-462e-b311-60d4e39aba78 63564d8473d7def7428d2607a95ecdde {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02644.WGS.N.hg38 C3L-02644 GBM WGS blood_normal CPT0227900002 6cdbd613-0752-40a2-9347-582356daf34f_wgs_gdc_realn.bam 76860325745 BAM harmonized CPTAC3 45a5b3d6-b371-4bf2-8477-3e06f8b6cb56 0e217be205a8f8c0886828381556548a {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02644.WGS.T C3L-02644 GBM WGS tumor CPT0227810007 CPT0227810007.WholeGenome.RP-2158.bam 27527064714 BAM submitted_aligned CPTAC3 a13b5822-be39-4ba1-9f54-902e9df06f95 10e67e30e7ed2c87dcfa21fad0d27284 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.WGS.T.hg38 C3L-02644 GBM WGS tumor CPT0227810007 46bef5ac-320b-47da-8f0b-ba57db403534_wgs_gdc_realn.bam 83884571975 BAM harmonized CPTAC3 fac8453c-2278-4a7a-8cca-571fb949d33e 47529e22657085a84e5a6a4e2b3f7c40 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.WXS.N C3L-02644 GBM WXS blood_normal CPT0227900002 CPT0227900002.WholeExome.RP-1303.bam 27011094237 BAM submitted_aligned CPTAC3 fc2e0bde-e7ba-4acb-8f99-eebdbb532cda b56eb09f3dcb775ad9abb1a7e8296272 {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02644.WXS.N.hg38 C3L-02644 GBM WXS blood_normal CPT0227900002 6cdbd613-0752-40a2-9347-582356daf34f_wxs_gdc_realn.bam 37600543856 BAM harmonized CPTAC3 d691a770-edf9-435f-9288-c9139d4c9f4c 07cb699a4ca4bfd587a36868024d6814 {"aliquot_tag": "ALQ_78b27e5c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02644.WXS.T C3L-02644 GBM WXS tumor CPT0227810007 CPT0227810007.WholeExome.RP-1303.bam 16766796957 BAM submitted_aligned CPTAC3 64803679-490c-4aa5-8cb4-dc077cf3c19a 36d278226a74e239dca2819d500522bf {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02644.WXS.T.hg38 C3L-02644 GBM WXS tumor CPT0227810007 46bef5ac-320b-47da-8f0b-ba57db403534_wxs_gdc_realn.bam 23551420409 BAM harmonized CPTAC3 e996952c-e610-4e7e-af08-31671e9e9d7b 3b2bf4340101b259d83a03b535f03d57 {"aliquot_tag": "ALQ_fee470c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02646.MethArray.Green.T C3L-02646 LSCC Methylation_Array tumor CPT0202530007 203219640158_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a6d083c3-1574-488e-9491-a1fa7b2ad366 b2a4921d7dee795e55338c3b24d5076c {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.MethArray.Red.T C3L-02646 LSCC Methylation_Array tumor CPT0202530007 203219640158_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 f4c1332a-6966-4620-951d-20353bd13266 0afb32b3df4d71d41f707c2651b1524f {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.miRNA-Seq.S12_L001_R1.T C3L-02646 LSCC miRNA-Seq tumor CPT0202530010 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L001_R1_001.unaln.bam 235807563 BAM S12_L001_R1 submitted_unaligned CPTAC3 f91bc2a5-969c-4f31-a63b-33fcb8ad0dc8 d50112eaaf00806b596d9f82c4c18dfa {"aliquot_tag": "ALQ_afd8bc40", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.miRNA-Seq.T.hg38 C3L-02646 LSCC miRNA-Seq tumor CPT0202530010 1f2c18d6-50d1-478d-abb5-9bfbe8b7626c_mirnaseq_gdc_realn.bam 259787484 BAM harmonized CPTAC3 97564b70-95c1-4856-8cea-d8601505d858 5c0f8b30ca21847375cbbcf46b8771fb {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.RNA-Seq.chimeric.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.chimeric.gdc_realn.bam 109265186 BAM chimeric harmonized CPTAC3 9f682f08-1767-4d5f-842a-6649b8de98a1 38802167c96edb04ba5288062e8bd862 {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.RNA-Seq.genomic.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.genomic.gdc_realn.bam 7543172254 BAM genomic harmonized CPTAC3 8fa47143-9171-42a2-ad3c-bc6890494296 a118dfe3bb9fb66429fbe093bc62f8f3 {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.RNA-Seq.S6_L008_R1.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R1_001.fastq.gz 3114636179 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 36760be8-bc8c-4f1f-bbb5-e7666c6d80ac 0dfd450ade12467a8ea2e747dead73ad {"aliquot_tag": "ALQ_afd8bc40", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.RNA-Seq.S6_L008_R2.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R2_001.fastq.gz 3369137067 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 d90d060a-db2c-4010-bb49-fb57929dd7f9 7c25a4f4d4f1be2eec31098dd2a63678 {"aliquot_tag": "ALQ_afd8bc40", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.RNA-Seq.transcriptome.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.transcriptome.gdc_realn.bam 8019506056 BAM transcriptome harmonized CPTAC3 5c7a84d9-355f-481e-87ab-0b962f8eac7d 47fc805e0382ba494c2823ba1a25a2a1 {"aliquot_tag": "ALQ_afd8bc40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.WGS.N C3L-02646 LSCC WGS blood_normal CPT0202660002 CPT0202660002.WholeGenome.RP-1303.bam 58127616048 BAM submitted_aligned CPTAC3 efc0d397-1c8e-4ffc-9e0b-cb4c90f9a592 799c9bcd335430884bbaa40b463d8fd0 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02646.WGS.N.hg38 C3L-02646 LSCC WGS blood_normal CPT0202660002 a0d0f408-012f-4580-b28d-aaad9ef55a9f_wgs_gdc_realn.bam 84464346595 BAM harmonized CPTAC3 ab08e047-4767-496d-8028-4150f9381989 31e7c83bcd9cdd260eb917124f193422 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02646.WGS.T C3L-02646 LSCC WGS tumor CPT0202530007 CPT0202530007.WholeGenome.RP-1303.bam 60895652962 BAM submitted_aligned CPTAC3 474201cb-aaf6-48c1-9844-85ff702fc292 e84c0225c35fe55317f49bdb7582d808 {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.WGS.T.hg38 C3L-02646 LSCC WGS tumor CPT0202530007 ffb7f59b-2554-45af-a0be-67a3c8c475e0_wgs_gdc_realn.bam 89037066609 BAM harmonized CPTAC3 59899683-9cfa-4471-aadd-caf311a8d5de 44dce6c58db1b72aec5396cfd02afef1 {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.WXS.N C3L-02646 LSCC WXS blood_normal CPT0202660002 CPT0202660002.WholeExome.RP-1303.bam 16697262385 BAM submitted_aligned CPTAC3 a15e1e2a-4cf2-41c6-a0b9-b30467522a49 492d2e96dcbd87565d66d62ac2441ef5 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02646.WXS.N.hg38 C3L-02646 LSCC WXS blood_normal CPT0202660002 a0d0f408-012f-4580-b28d-aaad9ef55a9f_wxs_gdc_realn.bam 23162153244 BAM harmonized CPTAC3 3ec28d87-2158-4bc0-a3b4-7a1c7d9baff8 bdcdaef801ccf6563b046b15cc9afc25 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02646.WXS.T C3L-02646 LSCC WXS tumor CPT0202530007 CPT0202530007.WholeExome.RP-1303.bam 19663876599 BAM submitted_aligned CPTAC3 7346604b-0377-403f-99d9-b26515e55d25 c479fd855a2233f4927c6268589afaf3 {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02646.WXS.T.hg38 C3L-02646 LSCC WXS tumor CPT0202530007 ffb7f59b-2554-45af-a0be-67a3c8c475e0_wxs_gdc_realn.bam 26923683521 BAM harmonized CPTAC3 b8b6ee6f-d4e3-40b6-926f-aa52eaa5189d 3724766e5a532e4ac4fb645a19181aaf {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.MethArray.Green.A C3L-02648 LSCC Methylation_Array tissue_normal CPT0204660006 203219650211_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0c9bf495-bc88-4663-9748-bfc14e04a032 0dde143ef8afc5085a83fce1b3d0ab0d {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.MethArray.Green.T C3L-02648 LSCC Methylation_Array tumor CPT0204600010 203219650100_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 878c0113-50fe-4e8a-b648-1c9a5145a4a1 6d77e53d08c5db073ddef04fa58eea1c {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.MethArray.Red.A C3L-02648 LSCC Methylation_Array tissue_normal CPT0204660006 203219650211_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 687a598e-a09c-48d2-be22-24a5ebd6705f 646a513edc1e42f6f712eddb25d771b2 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.MethArray.Red.T C3L-02648 LSCC Methylation_Array tumor CPT0204600010 203219650100_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 991f8fc7-6211-40b4-8ed4-1943bcf2eefc 82cc78689a430170ff37e1e808e42c5f {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.miRNA-Seq.A.hg38 C3L-02648 LSCC miRNA-Seq tissue_normal CPT0204660009 0a3e96bf-5a6b-44b2-bb7c-ebf8fc836d53_mirnaseq_gdc_realn.bam 232379933 BAM harmonized CPTAC3 76434566-9d3b-4bfb-b44e-e791b7e5fb83 155a6d348897f71aaa3231a225d33866 {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.miRNA-Seq.S20_L003_R1.A C3L-02648 LSCC miRNA-Seq tissue_normal CPT0204660009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACGAT_S20_L003_R1_001.unaln.bam 207678890 BAM S20_L003_R1 submitted_unaligned CPTAC3 d367db10-8a3d-4fa7-9b47-f2f9ad2e1101 c2dfe67cba0c44d2ae1015abc15c6835 {"aliquot_tag": "ALQ_e2bbfd41", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.miRNA-Seq.S7_L001_R1.T C3L-02648 LSCC miRNA-Seq tumor CPT0204600007 190206_UNC31-K00269_0191_AH2WY5BBXY_TATAAT_S7_L001_R1_001.unaln.bam 209723809 BAM S7_L001_R1 submitted_unaligned CPTAC3 1cd71e24-6b73-4b62-8885-4f98dc5cfaee 8a76b88961c7b7ec6977e0de9c650df7 {"aliquot_tag": "ALQ_8a4325e6", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.miRNA-Seq.T.hg38 C3L-02648 LSCC miRNA-Seq tumor CPT0204600007 b0b462af-3775-4a77-8fee-edce66426275_mirnaseq_gdc_realn.bam 239548197 BAM harmonized CPTAC3 3ad32c34-14ba-4527-b904-1e43f5ee0546 f2f2022a4752e7e0c2823ce4fdbc0aa0 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.RNA-Seq.chimeric.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.chimeric.gdc_realn.bam 167611945 BAM chimeric harmonized CPTAC3 a6cc8524-b5a7-4514-a1ec-aa6082942de8 5847a7e3e2686749a19533e63fc2dbed {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.RNA-Seq.chimeric.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.chimeric.gdc_realn.bam 120531942 BAM chimeric harmonized CPTAC3 0ee2e5a4-1393-4516-a7b9-8fae8906c996 c0920bdff408af1aa3d6d91a7d7dc4a3 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.RNA-Seq.genomic.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.genomic.gdc_realn.bam 8837248620 BAM genomic harmonized CPTAC3 238b2957-58c0-431d-be51-9cbfaf1f17ee 6dbde5419f13170a45084a9cfead5dbb {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.RNA-Seq.genomic.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.genomic.gdc_realn.bam 8177696835 BAM genomic harmonized CPTAC3 86484545-0621-40ad-b571-7fff5931cf8a dd30e2399d159f0780838fdd4d0e9df2 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.RNA-Seq.S5_L002_R1.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R1_001.fastq.gz 3550054685 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 f8c24041-3a00-4433-9fa2-3630b4c2aaff ec5a4f3b22b69635e8b2b15492490c67 {"aliquot_tag": "ALQ_8a4325e6", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.RNA-Seq.S5_L002_R2.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R2_001.fastq.gz 4001546962 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 1a7b33db-2d08-40f5-ac8e-88bdd1d3507a deac137e2324f3b9c240f9b9e63f6127 {"aliquot_tag": "ALQ_8a4325e6", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.RNA-Seq.S8_L002_R1.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4029772230 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 929e8362-6fb7-4ee2-b72f-4189ccd885c6 de7677ab672ebe96033be26709c951d6 {"aliquot_tag": "ALQ_e2bbfd41", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.RNA-Seq.S8_L002_R2.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4506104079 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 14c86078-8e3e-4341-8f4c-a841c8ece202 f93a11480b27d568d5246147cb39bf1d {"aliquot_tag": "ALQ_e2bbfd41", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.RNA-Seq.transcriptome.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.transcriptome.gdc_realn.bam 9896505295 BAM transcriptome harmonized CPTAC3 3d70d90a-247f-4d8f-af0f-77647570bbb5 0f11fe0361681f4195815271ace40ba1 {"aliquot_tag": "ALQ_e2bbfd41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.RNA-Seq.transcriptome.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.transcriptome.gdc_realn.bam 10175673190 BAM transcriptome harmonized CPTAC3 b951f506-2b78-4122-92f9-87638d463413 3bf806f8fa77773aa9d26f2b9d2a75b3 {"aliquot_tag": "ALQ_8a4325e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.WGS.A C3L-02648 LSCC WGS tissue_normal CPT0204660006 CPT0204660006.WholeGenome.RP-1303.bam 57891947825 BAM submitted_aligned CPTAC3 ccc04fb8-5e4c-4a32-808d-42761c040880 11e40d5c770cccf55d16986d17989f4f {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.WGS.A.hg38 C3L-02648 LSCC WGS tissue_normal CPT0204660006 c2fd39e9-b12b-443e-8791-39c6b0eca5fb_wgs_gdc_realn.bam 84380514202 BAM harmonized CPTAC3 bd93be81-4c63-452e-9e39-720e44e4faf6 caa9b6e9e6df7ded66017010bb2dc091 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.WGS.N C3L-02648 LSCC WGS blood_normal CPT0204750002 CPT0204750002.WholeGenome.RP-1303.bam 59498095208 BAM submitted_aligned CPTAC3 5eeefcf1-0515-4b51-9df8-b30dfc143192 5d9b7bc07aeeddcf18126619e248b0d1 {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02648.WGS.N.hg38 C3L-02648 LSCC WGS blood_normal CPT0204750002 f67b7239-b480-45f2-99f9-8d791898bc76_wgs_gdc_realn.bam 86561325429 BAM harmonized CPTAC3 6de08dda-1701-465b-8ec2-e16b812b4daa 28f975bfccb405b15dfe51d466de4a15 {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02648.WGS.T C3L-02648 LSCC WGS tumor CPT0204600010 CPT0204600010.WholeGenome.RP-1303.bam 58964643008 BAM submitted_aligned CPTAC3 c972fac8-98e7-413d-a8fc-37da0b386456 1e8b07698d358311688ae979e21b525d {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.WGS.T.hg38 C3L-02648 LSCC WGS tumor CPT0204600010 ef93c6db-775c-4fb4-9ccf-0a154af43b67_wgs_gdc_realn.bam 85582553962 BAM harmonized CPTAC3 382df309-7ba9-42b0-8b90-62894c829084 6459dae138f2fb231608107f0e31d1cd {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.WXS.A C3L-02648 LSCC WXS tissue_normal CPT0204660006 CPT0204660006.WholeExome.RP-1303.bam 19812004921 BAM submitted_aligned CPTAC3 2a22c44e-8fd6-4d42-9253-e315a18d9fc1 c2459ddc7f62f46be4398d8c5783cab7 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.WXS.A.hg38 C3L-02648 LSCC WXS tissue_normal CPT0204660006 c2fd39e9-b12b-443e-8791-39c6b0eca5fb_wxs_gdc_realn.bam 27344320214 BAM harmonized CPTAC3 32637388-6c79-4944-9af8-2d99611b2305 17140450df9f54ef4525620232652ba4 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02648.WXS.N C3L-02648 LSCC WXS blood_normal CPT0204750002 CPT0204750002.WholeExome.RP-1303.bam 29670529236 BAM submitted_aligned CPTAC3 39efa845-2cb8-4110-b0dd-7dad4aff8816 a0aa7c2f97177afcd30498e81de62d83 {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02648.WXS.N.hg38 C3L-02648 LSCC WXS blood_normal CPT0204750002 f67b7239-b480-45f2-99f9-8d791898bc76_wxs_gdc_realn.bam 40637543975 BAM harmonized CPTAC3 a839aaf0-87e8-4e89-a730-0cd8c2755ab6 a4ea66b98de4121478026b8d5a7c04bc {"aliquot_tag": "ALQ_f9958dbc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02648.WXS.T C3L-02648 LSCC WXS tumor CPT0204600010 CPT0204600010.WholeExome.RP-1303.bam 20641774861 BAM submitted_aligned CPTAC3 98282110-4bba-40b9-a28f-993375e51ecc 63bdc270734b62d1e59f431806b1b1f7 {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02648.WXS.T.hg38 C3L-02648 LSCC WXS tumor CPT0204600010 ef93c6db-775c-4fb4-9ccf-0a154af43b67_wxs_gdc_realn.bam 29256497051 BAM harmonized CPTAC3 2db9ae7f-ef2e-4f53-80fd-57ea9461656f 9d63ae82a522ed265d91b6b514a3c156 {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.MethArray.Green.A C3L-02649 LSCC Methylation_Array tissue_normal CPT0204820006 203219640160_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8cc99b9a-6374-4437-9b9d-7be8e9547c51 88a49fab956c5c7ae84b07a007cbcbca {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.MethArray.Green.T C3L-02649 LSCC Methylation_Array tumor CPT0204800006 203219670117_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8396ebf1-faee-492b-aa73-f1b55fe8b2e0 ab8b047583df704e246f680a055eb606 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.MethArray.Red.A C3L-02649 LSCC Methylation_Array tissue_normal CPT0204820006 203219640160_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 f99a6196-9e86-4aaa-8865-ca0147600d21 79775dafd9c933567793af07ab718a63 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.MethArray.Red.T C3L-02649 LSCC Methylation_Array tumor CPT0204800006 203219670117_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 19865f41-3f6d-406f-8f1d-ecba690c3f54 65b527692e00279c0e0073b8aa2e3a50 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.miRNA-Seq.A.hg38 C3L-02649 LSCC miRNA-Seq tissue_normal CPT0204820009 2d74b848-808c-4e17-a828-cb78dc3c3bfd_mirnaseq_gdc_realn.bam 247938190 BAM harmonized CPTAC3 4c134a4d-956a-47ab-b24d-1f31a4aaefb0 e7c00bf80af121b039f1ff80f2f4c049 {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.miRNA-Seq.S19_L003_R1.A C3L-02649 LSCC miRNA-Seq tissue_normal CPT0204820009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACTCA_S19_L003_R1_001.unaln.bam 224053384 BAM S19_L003_R1 submitted_unaligned CPTAC3 94335aed-b8e6-4f85-9eb9-eb1070d34658 a61a19ff9c584ba0eb25e57fb7ca6105 {"aliquot_tag": "ALQ_2d313af1", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.miRNA-Seq.S6_L001_R1.T C3L-02649 LSCC miRNA-Seq tumor CPT0204800009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCATTC_S6_L001_R1_001.unaln.bam 148557787 BAM S6_L001_R1 submitted_unaligned CPTAC3 d3d296f3-ce9c-4bfc-b85c-7e30f48721b5 e27c177a3ee567f54e9d4d0f3b7c4bfb {"aliquot_tag": "ALQ_57f16991", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.miRNA-Seq.T.hg38 C3L-02649 LSCC miRNA-Seq tumor CPT0204800009 37e4900c-40e6-456b-892c-385db2f6f627_mirnaseq_gdc_realn.bam 165092007 BAM harmonized CPTAC3 4a36b2d4-1738-4375-aa48-bf72b998bf51 9cce43327d9e005b3dbe80ee3531687c {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.RNA-Seq.chimeric.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.chimeric.gdc_realn.bam 85759864 BAM chimeric harmonized CPTAC3 90516345-a170-4fb1-ba7e-6bde613d1311 a9afcaed696d0e59bf24ef3c563780b7 {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.RNA-Seq.chimeric.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.chimeric.gdc_realn.bam 122057575 BAM chimeric harmonized CPTAC3 deef0c56-bb0f-43c9-9e1e-05f88253b017 87ddae277e4ae52dbd4ec0d1c7613f8a {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.RNA-Seq.genomic.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.genomic.gdc_realn.bam 7063762763 BAM genomic harmonized CPTAC3 b40f715b-0a88-4f70-89b3-76ce14f094fd 9d8466167df74712ce937979133776cf {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.RNA-Seq.genomic.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.genomic.gdc_realn.bam 9009147555 BAM genomic harmonized CPTAC3 cd393110-6447-4292-bbb8-fa677a5d1e33 3de1bcdb1b0b0921325d468d005416ac {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.RNA-Seq.S6_L002_R1.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R1_001.fastq.gz 3924499029 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 660ae3d2-975a-48fc-ad93-2c288f4c4cac ea22b3173fbec345bfdee298be72a469 {"aliquot_tag": "ALQ_57f16991", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.RNA-Seq.S6_L002_R2.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R2_001.fastq.gz 4358410672 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 1d0ac55c-c17d-403f-b40c-2d29a5181eae 4245f32f30378d8f70ff4ba0eff764d4 {"aliquot_tag": "ALQ_57f16991", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.RNA-Seq.S7_L002_R1.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3068260409 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 774c3f15-e308-4e3b-96bc-e30685e9655e 7580cdd6bdf27c6246c2ab7a72d8fd85 {"aliquot_tag": "ALQ_2d313af1", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.RNA-Seq.S7_L002_R2.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3400288572 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 fb856237-c04a-45da-9d8b-8f8e15b97d38 076048e2d45ed4969f83035c153c886d {"aliquot_tag": "ALQ_2d313af1", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.RNA-Seq.transcriptome.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.transcriptome.gdc_realn.bam 7079438629 BAM transcriptome harmonized CPTAC3 243f1533-2923-472a-8f1c-43880c7f267d 6c2c70b0fe4ee8e374ff04a5b96d7dd7 {"aliquot_tag": "ALQ_2d313af1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.RNA-Seq.transcriptome.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.transcriptome.gdc_realn.bam 11292459117 BAM transcriptome harmonized CPTAC3 1baee544-e43c-42b8-8bfc-d66932a9022b 63938d828a1e746489fd505f5582363c {"aliquot_tag": "ALQ_57f16991", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.WGS.A C3L-02649 LSCC WGS tissue_normal CPT0204820006 CPT0204820006.WholeGenome.RP-1303.bam 60360077481 BAM submitted_aligned CPTAC3 da4fcf94-6522-4bb1-8296-a9a2e74dc434 422a0010138911cbec9e692d74e5c6b6 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.WGS.A.hg38 C3L-02649 LSCC WGS tissue_normal CPT0204820006 9762e18f-229e-44d4-a77d-af8394788f2a_wgs_gdc_realn.bam 88409634597 BAM harmonized CPTAC3 b7bc9a56-3e91-4640-b3e5-70e7a74b0585 2101ad503a82ee377001a93d64a6b037 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.WGS.N C3L-02649 LSCC WGS blood_normal CPT0204930002 CPT0204930002.WholeGenome.RP-1303.bam 59795271705 BAM submitted_aligned CPTAC3 b7b4c045-2c2b-4487-827a-7dfbccf8ad26 d25de535b91fa82d2dc0c54c0b86c076 {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02649.WGS.N.hg38 C3L-02649 LSCC WGS blood_normal CPT0204930002 72c299ee-e3f5-424b-b8e1-53670cb12243_wgs_gdc_realn.bam 88133938320 BAM harmonized CPTAC3 58138bab-7fb8-46cd-9447-69b243eb6adb b1106c807ce2bdc4b6872f710e3b4774 {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02649.WGS.T C3L-02649 LSCC WGS tumor CPT0204800006 CPT0204800006.WholeGenome.RP-1303.bam 63256909732 BAM submitted_aligned CPTAC3 20e8ad8b-5c21-4a49-9c48-993bb3593684 bd13243dd604a9bd5b78e983e6d1ba38 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.WGS.T.hg38 C3L-02649 LSCC WGS tumor CPT0204800006 0f3d9c3e-663e-4a22-9700-4d5b0b379643_wgs_gdc_realn.bam 90921931098 BAM harmonized CPTAC3 2321f9d2-017a-4118-90bf-f8d0f14290e4 9af1d0591b616c9f862a897b422ad72e {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.WXS.A C3L-02649 LSCC WXS tissue_normal CPT0204820006 CPT0204820006.WholeExome.RP-1303.bam 18283695484 BAM submitted_aligned CPTAC3 cd194cc7-4f69-4f40-abe5-78e9ad1b5a40 18d6edd48fb60e73bf67f6e92d84b7b4 {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.WXS.A.hg38 C3L-02649 LSCC WXS tissue_normal CPT0204820006 9762e18f-229e-44d4-a77d-af8394788f2a_wxs_gdc_realn.bam 25504334477 BAM harmonized CPTAC3 ce291d4a-18da-4291-b2e8-816f648c2cf1 713b4c45e7effd049457d3b90ca5b33e {"aliquot_tag": "ALQ_bd8e2760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02649.WXS.N C3L-02649 LSCC WXS blood_normal CPT0204930002 CPT0204930002.WholeExome.RP-1303.bam 24901049947 BAM submitted_aligned CPTAC3 de88e1ce-6c33-42b2-8f33-187a73d8c9b0 b350b53709e7e631af0adfe0baad8535 {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02649.WXS.N.hg38 C3L-02649 LSCC WXS blood_normal CPT0204930002 72c299ee-e3f5-424b-b8e1-53670cb12243_wxs_gdc_realn.bam 33917655167 BAM harmonized CPTAC3 27360f7f-8ce2-4af0-a09e-907e71b0f0f8 ed4733d1c173f35237023c8b7365390e {"aliquot_tag": "ALQ_4cdf196c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02649.WXS.T C3L-02649 LSCC WXS tumor CPT0204800006 CPT0204800006.WholeExome.RP-1303.bam 26958742239 BAM submitted_aligned CPTAC3 19f7f7be-7600-4e69-b67c-178ce1063689 8920145f6b63010ad9219da856832228 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02649.WXS.T.hg38 C3L-02649 LSCC WXS tumor CPT0204800006 0f3d9c3e-663e-4a22-9700-4d5b0b379643_wxs_gdc_realn.bam 37220092398 BAM harmonized CPTAC3 e057c584-c090-4f21-b1a4-f7a93be5076a fe5e24f1c2fb10283fdadd58c82b6222 {"aliquot_tag": "ALQ_c74e7400", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.MethArray.Green.A C3L-02650 LSCC Methylation_Array tissue_normal CPT0205000006 203219650164_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f0160aee-4851-4cd9-aa38-871016e70646 6985875982634df924c5ccd49bf04061 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.MethArray.Green.T C3L-02650 LSCC Methylation_Array tumor CPT0204990006 203219750071_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 36d357b2-fad2-4317-9d98-c283950b8ac3 3ba5f0396bbf48a817b1fe3e1bd9f63e {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.MethArray.Red.A C3L-02650 LSCC Methylation_Array tissue_normal CPT0205000006 203219650164_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 a0da2049-e911-4831-8348-cb65ba3cd659 82b75524d2b583a3ff2f1a9408a57161 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.MethArray.Red.T C3L-02650 LSCC Methylation_Array tumor CPT0204990006 203219750071_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 7282a44b-f3d3-4fee-9e92-3bd4efe2c72c 5b059f18083062c2dee24a23a30663be {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.miRNA-Seq.A.hg38 C3L-02650 LSCC miRNA-Seq tissue_normal CPT0205000009 3f535fad-d7f7-44a9-a0c0-895a8d7f6f55_mirnaseq_gdc_realn.bam 163671108 BAM harmonized CPTAC3 cd4236d4-7a0e-4b08-a204-1e7609288a2b 9ff78f58d79907cac82dbfdcbaf035a0 {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.miRNA-Seq.S18_L003_R1.A C3L-02650 LSCC miRNA-Seq tissue_normal CPT0205000009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGGCG_S18_L003_R1_001.unaln.bam 145206307 BAM S18_L003_R1 submitted_unaligned CPTAC3 e31536ac-3de2-4f4a-961a-6fb17f52d380 a0b60a8359287f4d3b9ab266e3187fde {"aliquot_tag": "ALQ_1dd5e048", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.miRNA-Seq.S5_L001_R1.T C3L-02650 LSCC miRNA-Seq tumor CPT0204990009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCCCGA_S5_L001_R1_001.unaln.bam 184394999 BAM S5_L001_R1 submitted_unaligned CPTAC3 a57dbf80-b523-46ea-926d-94ec0330371a c163122fab60bb074ba8f6dabf35cc96 {"aliquot_tag": "ALQ_91bdd845", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.miRNA-Seq.T.hg38 C3L-02650 LSCC miRNA-Seq tumor CPT0204990009 3d60696e-88e5-4e17-a9a4-77938733e970_mirnaseq_gdc_realn.bam 203001188 BAM harmonized CPTAC3 2a741461-c12f-40eb-a163-5880137edae8 9053beb0784663e71487724ab475c605 {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.RNA-Seq.chimeric.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.chimeric.gdc_realn.bam 69283153 BAM chimeric harmonized CPTAC3 23c17d1c-e901-4951-b106-dd9c9b69c548 911ff1ad2a0cb3f33d98c69fd016df4e {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.RNA-Seq.chimeric.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.chimeric.gdc_realn.bam 165053637 BAM chimeric harmonized CPTAC3 251b0d64-eefc-4bb6-89d8-fa6948949b61 ec4f1a5c4caaa62315a70a4cf0cda1cd {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.RNA-Seq.genomic.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.genomic.gdc_realn.bam 7653357291 BAM genomic harmonized CPTAC3 114d4bf1-3b30-47a0-b4e6-29ca8b4b7e50 400c339849a29b159779e3740c054eec {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.RNA-Seq.genomic.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.genomic.gdc_realn.bam 9662240135 BAM genomic harmonized CPTAC3 8527f9c9-507c-457a-83c4-03e6fbe73913 cd42538b1e6350444f24018eb777aac9 {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.RNA-Seq.S8_L002_R1.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R1_001.fastq.gz 4116920239 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 52875c96-57a5-4690-bb20-1b52e8b91674 09b0f527660ee055c9fe54957449d7a1 {"aliquot_tag": "ALQ_91bdd845", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.RNA-Seq.S8_L002_R2.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R2_001.fastq.gz 4479948519 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 4a8c3560-09bb-4ce0-af4a-1a1a720c63d5 42d15aca00a8f65417e0290e863ce794 {"aliquot_tag": "ALQ_91bdd845", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.RNA-Seq.S9_L003_R1.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3485391950 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 cbe9fab9-c74a-4bf9-9a64-086c18f029a1 b7a4c118310a72b59dc8b07968e9da43 {"aliquot_tag": "ALQ_1dd5e048", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.RNA-Seq.S9_L003_R2.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3830669394 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 f5440b74-3438-4f23-b922-126b6c66b89a f4116186c2a9909d9cb208ed4b0509ab {"aliquot_tag": "ALQ_1dd5e048", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.RNA-Seq.transcriptome.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.transcriptome.gdc_realn.bam 8810029528 BAM transcriptome harmonized CPTAC3 857a250e-835f-4a1b-a87a-dda5c4d4d718 49596a8aaf6e42beef2360649fb48efa {"aliquot_tag": "ALQ_1dd5e048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.RNA-Seq.transcriptome.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.transcriptome.gdc_realn.bam 12421021938 BAM transcriptome harmonized CPTAC3 79012fdd-de8a-45a4-a0c1-ecfd80f67c34 4758593e8cf1f6c2b84813b22e8fb73d {"aliquot_tag": "ALQ_91bdd845", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.WGS.A C3L-02650 LSCC WGS tissue_normal CPT0205000006 CPT0205000006.WholeGenome.RP-1303.bam 53669948388 BAM submitted_aligned CPTAC3 55e738ef-777f-4679-b52f-4bfb683056b0 0e3ca683e328069e8a8ecc6df97c84c8 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.WGS.A.hg38 C3L-02650 LSCC WGS tissue_normal CPT0205000006 ad2d8ed8-f6d2-4967-b80e-e9861cab8584_wgs_gdc_realn.bam 77182714644 BAM harmonized CPTAC3 dcc38388-bb3e-42d2-9e09-2042c18b85c9 fb4deda13429f43a6332f37b9c755cc2 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.WGS.N C3L-02650 LSCC WGS blood_normal CPT0205110002 CPT0205110002.WholeGenome.RP-1303.bam 60030241843 BAM submitted_aligned CPTAC3 e6c32974-690d-432f-a968-bac2799db4d7 632b81d77428a4eb0553872495fa1f24 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02650.WGS.N.hg38 C3L-02650 LSCC WGS blood_normal CPT0205110002 016f1a26-26fd-47b4-97f2-e1be18215a1a_wgs_gdc_realn.bam 87897608634 BAM harmonized CPTAC3 125bd299-2408-4825-86f0-c7dbd224c1ab 57121fcc123ceed6b87b6c9171798c34 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02650.WGS.T C3L-02650 LSCC WGS tumor CPT0204990006 CPT0204990006.WholeGenome.RP-1303.bam 67871495881 BAM submitted_aligned CPTAC3 ee0b9197-eeeb-4350-8c93-8b54bcccbf0a d6652300d123f62f30914b4fc70010e4 {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.WGS.T.hg38 C3L-02650 LSCC WGS tumor CPT0204990006 4562d6e2-e2a9-4bc2-84c3-69e1d9fd3663_wgs_gdc_realn.bam 100032216458 BAM harmonized CPTAC3 9eb68351-9f2d-4b8b-88fb-5df92e88f30e 718696f3274f1bc870c49ae8fa50f613 {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.WXS.A C3L-02650 LSCC WXS tissue_normal CPT0205000006 CPT0205000006.WholeExome.RP-1303.bam 23381269718 BAM submitted_aligned CPTAC3 23a708db-62b0-444d-9445-d3aef3493ba7 30191c37cd5479801ec5379fe07a291f {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.WXS.A.hg38 C3L-02650 LSCC WXS tissue_normal CPT0205000006 ad2d8ed8-f6d2-4967-b80e-e9861cab8584_wxs_gdc_realn.bam 32271646624 BAM harmonized CPTAC3 ef599122-22fc-42b2-a5b3-662ab7893f37 c2d41e4920eda5501bde5783c5186b56 {"aliquot_tag": "ALQ_8d6afdd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02650.WXS.N C3L-02650 LSCC WXS blood_normal CPT0205110002 CPT0205110002.WholeExome.RP-1303.bam 22150976178 BAM submitted_aligned CPTAC3 584598c2-da88-42a7-80c0-dcd69c198b82 4fc7b7b0dc40ed1f4f8b4d9fcaa460c8 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02650.WXS.N.hg38 C3L-02650 LSCC WXS blood_normal CPT0205110002 016f1a26-26fd-47b4-97f2-e1be18215a1a_wxs_gdc_realn.bam 30748561655 BAM harmonized CPTAC3 07577c36-658a-4b52-97c4-bf6f818dae04 cd6603901eb25a26b106dccf3d69e5f9 {"aliquot_tag": "ALQ_7c3bc3d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02650.WXS.T C3L-02650 LSCC WXS tumor CPT0204990006 CPT0204990006.WholeExome.RP-1303.bam 19302203430 BAM submitted_aligned CPTAC3 d31d0fe9-500d-4ada-bb2b-4cb98994d150 4adabba21818c6c03fb1a81b515388ac {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02650.WXS.T.hg38 C3L-02650 LSCC WXS tumor CPT0204990006 4562d6e2-e2a9-4bc2-84c3-69e1d9fd3663_wxs_gdc_realn.bam 27490845409 BAM harmonized CPTAC3 01931dab-32c0-407b-a8de-b3e2216d257e be2c4c3be8af40aa72a3ee8d0e3c5ca1 {"aliquot_tag": "ALQ_102c5d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.MethArray.Green.A C3L-02651 HNSCC Methylation_Array tissue_normal CPT0242000007 203220070084_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 89938916-0d55-4cce-b211-96a3c1eda571 3ee127f70ab0ea71c64ed827e6ab9e15 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.MethArray.Green.T C3L-02651 HNSCC Methylation_Array tumor CPT0241980007 203220070102_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a394f35e-5796-4402-83ae-cd80168bad8d c735bfa4d9d0f2b6e72a3ac77d46a491 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.MethArray.Red.A C3L-02651 HNSCC Methylation_Array tissue_normal CPT0242000007 203220070084_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 c41761f0-9ec5-4bc8-b147-0bc934c3c9c1 8d481f47de3aa79203b53963e6932055 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.MethArray.Red.T C3L-02651 HNSCC Methylation_Array tumor CPT0241980007 203220070102_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 f67acd51-e532-424c-a4c0-e0ea0af1e3c9 5ba122aa03bfdd13348cbb6e9f91b279 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.miRNA-Seq.A.hg38 C3L-02651 HNSCC miRNA-Seq tissue_normal CPT0242000010 e94a8af8-6c7e-484f-88b2-190538c6f049_mirnaseq_gdc_realn.bam 302312131 BAM harmonized CPTAC3 6b79b292-2956-4510-a210-ee12666fd0cf bf43ebe469b43214dcaacc2365ffb359 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.miRNA-Seq.S2_L007_R1.T C3L-02651 HNSCC miRNA-Seq tumor CPT0241980010 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L007_R1_001.unaln.bam 251543485 BAM S2_L007_R1 submitted_unaligned CPTAC3 39743bce-af50-476f-b4d2-387dadb9d434 42275f7e251efa0dc99eca4905967b0b {"aliquot_tag": "ALQ_1a68594d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.miRNA-Seq.S42_L006_R1.A C3L-02651 HNSCC miRNA-Seq tissue_normal CPT0242000010 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L006_R1_001.unaln.bam 267989091 BAM S42_L006_R1 submitted_unaligned CPTAC3 17052f17-e8f2-4488-9f51-2161a9cc1812 1e6da475147de3b5e4fda27e643df98e {"aliquot_tag": "ALQ_3cff59d9", "sample": "S42", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.miRNA-Seq.T.hg38 C3L-02651 HNSCC miRNA-Seq tumor CPT0241980010 83034426-0e21-4d1c-8ee8-372e0acd7eaf_mirnaseq_gdc_realn.bam 288593792 BAM harmonized CPTAC3 a1c7aac7-308a-47e4-9d19-6df3afb8e111 e46ba09dbc981d7685a7c91977adf335 {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.RNA-Seq.chimeric.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.chimeric.gdc_realn.bam 27787732 BAM chimeric harmonized CPTAC3 f5fb8e9e-cd63-4026-b05d-137b19c61084 a957cc5410f567f8646b0afdfc085386 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.RNA-Seq.chimeric.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.chimeric.gdc_realn.bam 30498989 BAM chimeric harmonized CPTAC3 b075e885-4575-455a-9563-2e22ef4e3927 aad48a2c62f7149518b45241e4ecb9e3 {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.RNA-Seq.genomic.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.genomic.gdc_realn.bam 7588649779 BAM genomic harmonized CPTAC3 d6de33aa-80e5-4814-84ae-c552d03b1a0b 9f924a6eacabc6c39aa9586dc73749d8 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.RNA-Seq.genomic.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.genomic.gdc_realn.bam 8078627012 BAM genomic harmonized CPTAC3 ed055d42-733a-4882-ac30-a2e7fb1b7286 38716dce1dcc077f5aabc2d4ab5d2089 {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.RNA-Seq.S18_L005_R1.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R1_001.fastq.gz 3597114940 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 2dbd549b-e379-420c-92ed-5d8c178ec879 7e514777a3960cacc5f88300a2dea733 {"aliquot_tag": "ALQ_3cff59d9", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.RNA-Seq.S18_L005_R2.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R2_001.fastq.gz 4047600964 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 71d88074-202b-47d6-b1ef-077051148409 c54cab59b4c63207103f17276181bf36 {"aliquot_tag": "ALQ_3cff59d9", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.RNA-Seq.S45_L008_R1.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R1_001.fastq.gz 3956525663 FASTQ S45_L008_R1 submitted_unaligned CPTAC3 0b2cd295-9ab3-41f1-b440-125ee4f411ee 2587998656582c4982155174026495f7 {"aliquot_tag": "ALQ_1a68594d", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.RNA-Seq.S45_L008_R2.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R2_001.fastq.gz 4352765519 FASTQ S45_L008_R2 submitted_unaligned CPTAC3 04efa0a5-6559-4aa7-a4d7-11d25e62f637 0e404acaaff5c90bbb80a5d385ff6e2b {"aliquot_tag": "ALQ_1a68594d", "sample": "S45", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.RNA-Seq.transcriptome.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.transcriptome.gdc_realn.bam 11736440951 BAM transcriptome harmonized CPTAC3 b68e0a12-d156-4bed-91cd-36e3c04b5bb1 3385bb19ee0d70ab6488e11b03de5ee7 {"aliquot_tag": "ALQ_3cff59d9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.RNA-Seq.transcriptome.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.transcriptome.gdc_realn.bam 10505568768 BAM transcriptome harmonized CPTAC3 868c5078-f8da-4ae2-929f-9a4c8e363b99 10141909fc25608b054b8f0c7f40022c {"aliquot_tag": "ALQ_1a68594d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.WGS.N C3L-02651 HNSCC WGS blood_normal CPT0242110002 CPT0242110002.WholeGenome.RP-1303.bam 58233984360 BAM submitted_aligned CPTAC3 3f4d420d-549c-4e06-9968-0ee9221b1607 f581eca94623f3f14d71c412ef6d0cda {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02651.WGS.N.hg38 C3L-02651 HNSCC WGS blood_normal CPT0242110002 bef61092-18b4-4faa-9ca2-e2df017cd929_wgs_gdc_realn.bam 86494300984 BAM harmonized CPTAC3 6abbd1e0-f10a-49f1-9355-98d743ad5c8b d6be891c1f2d741e9cc9f2e47e2bd8ec {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02651.WGS.T C3L-02651 HNSCC WGS tumor CPT0241980007 CPT0241980007.WholeGenome.RP-1303.bam 60218801352 BAM submitted_aligned CPTAC3 4bbcc793-13e1-4c05-8333-5abfd18c5ec7 9577c7f6fd9cc3703b7640ddd87608e8 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.WGS.T.hg38 C3L-02651 HNSCC WGS tumor CPT0241980007 b8885ef7-8413-4a1c-82fd-c9f586ff8b1d_wgs_gdc_realn.bam 88629628251 BAM harmonized CPTAC3 aa35b4bf-09f8-438a-85a2-660ecf36df41 041736fc14afddbef09d506425a9a3a5 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.WXS.A C3L-02651 HNSCC WXS tissue_normal CPT0242000007 CPT0242000007.WholeExome.RP-1303.bam 22219582797 BAM submitted_aligned CPTAC3 183df6dd-c58a-416a-b03a-7f2be965d2b8 685c9ed74a7fab37160d66e60e27a1b8 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.WXS.A.hg38 C3L-02651 HNSCC WXS tissue_normal CPT0242000007 bc6b549b-0c9b-4af1-9e7e-efb98842ba07_wxs_gdc_realn.bam 30262206275 BAM harmonized CPTAC3 e63db54f-51f0-4ad7-b16a-b1eccf907107 df13f0a8a10b672e6374d4170cb8c083 {"aliquot_tag": "ALQ_bb80fd3b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02651.WXS.N C3L-02651 HNSCC WXS blood_normal CPT0242110002 CPT0242110002.WholeExome.RP-1303.bam 20993505724 BAM submitted_aligned CPTAC3 e3e2ff93-96a6-42f4-ab1b-ca95d58551ce 56f970db4a5500cb7292e469de9e3b62 {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02651.WXS.N.hg38 C3L-02651 HNSCC WXS blood_normal CPT0242110002 bef61092-18b4-4faa-9ca2-e2df017cd929_wxs_gdc_realn.bam 29263848723 BAM harmonized CPTAC3 31310f51-6711-494c-8ed4-f1ff18b29f3d e1a927249a306d856a72fa6c672a7fc7 {"aliquot_tag": "ALQ_3dd6f3a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02651.WXS.T C3L-02651 HNSCC WXS tumor CPT0241980007 CPT0241980007.WholeExome.RP-1303.bam 24518975713 BAM submitted_aligned CPTAC3 aaed60ae-bd17-4ea5-9f07-7b1d970863f0 b087375f33a38f1df5a8bb653fd57d79 {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02651.WXS.T.hg38 C3L-02651 HNSCC WXS tumor CPT0241980007 b8885ef7-8413-4a1c-82fd-c9f586ff8b1d_wxs_gdc_realn.bam 34002342143 BAM harmonized CPTAC3 6c5876d9-4db8-4ff0-8558-21cdc1bf903b 5915a4e4b324f8938468d3e92d33868e {"aliquot_tag": "ALQ_9d17fdaf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.MethArray.Green.A C3L-02654 LUAD Methylation_Array tissue_normal CPT0205180007 203561620072_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 25066033-1757-4d0f-9212-9736124266ff 2b592ff91d986d4ca0fc78b6d3c5788e {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.MethArray.Green.T C3L-02654 LUAD Methylation_Array tumor CPT0205140006 203273630048_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8d2eda67-b795-4a7c-bf43-f226926c897a 48072bac6cad1f728d8c9b63633050c6 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.MethArray.Red.A C3L-02654 LUAD Methylation_Array tissue_normal CPT0205180007 203561620072_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 54091028-9b0c-4045-877a-ef8f3f2c9b95 aa566919e615b359926e0114d798594a {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.MethArray.Red.T C3L-02654 LUAD Methylation_Array tumor CPT0205140006 203273630048_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 5ebf502b-77c9-4923-bfc4-cafd6965247b a92f220fcfdd1d09c9a3acec9e08a720 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.miRNA-Seq.A.hg38 C3L-02654 LUAD miRNA-Seq tissue_normal CPT0205180010 6885a580-72c8-4a42-a8d9-aa3dda6f7fd7_mirnaseq_gdc_realn.bam 165138044 BAM harmonized CPTAC3 87e5f23c-1651-4e3e-9cab-edf21c8cd464 425e97e7c31b412b6edc91d729fa4948 {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.miRNA-Seq.S2_L007_R1.T C3L-02654 LUAD miRNA-Seq tumor CPT0205140009 190722_UNC31-K00269_0234_AH7VGTBBXY_GCCAAT_S2_L007_R1_001.unaln.bam 251681842 BAM S2_L007_R1 submitted_unaligned CPTAC3 027a7061-f8ad-469d-9fbc-5ff88022e9a6 ee78ac2b93a3ef35c4c05833b84455e2 {"aliquot_tag": "ALQ_2309952d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.miRNA-Seq.S45_L006_R1.A C3L-02654 LUAD miRNA-Seq tissue_normal CPT0205180010 190722_UNC31-K00269_0234_AH7VGTBBXY_CAAAAG_S45_L006_R1_001.unaln.bam 144910672 BAM S45_L006_R1 submitted_unaligned CPTAC3 1b7347c7-3b23-4604-9621-fe811b1c9969 6e9d1f26ea63a541ba62d5fc8c766233 {"aliquot_tag": "ALQ_863ef1c9", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.miRNA-Seq.T.hg38 C3L-02654 LUAD miRNA-Seq tumor CPT0205140009 5dc44c93-5855-4246-934b-6238801ef4ed_mirnaseq_gdc_realn.bam 282623342 BAM harmonized CPTAC3 57486fd6-b23f-4453-9b38-ab50f7548010 47c6fda835fb15c6de2f8fa637fe3400 {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.RNA-Seq.chimeric.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.chimeric.gdc_realn.bam 25962794 BAM chimeric harmonized CPTAC3 e43ef4cb-57a5-4e6b-8601-f9d194a11228 c827e4aaa271717407b7a70cd427c31a {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.RNA-Seq.chimeric.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.chimeric.gdc_realn.bam 38720916 BAM chimeric harmonized CPTAC3 67bbc7df-d2c2-4501-aefb-70e19271c208 23b297e23ad6c7c04adf2d4b758f53d5 {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.RNA-Seq.genomic.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.genomic.gdc_realn.bam 9271115226 BAM genomic harmonized CPTAC3 40c7b98c-00e3-4aa1-8fd1-a0419218ba4b 4a454d9a497a37934d464569a1bf077d {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.RNA-Seq.genomic.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.genomic.gdc_realn.bam 9529726901 BAM genomic harmonized CPTAC3 493e521e-192a-4bb4-8021-19dd6b558b63 d757dedd4d6149568e0708ed6167f60e {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.RNA-Seq.S18_L005_R1.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R1_001.fastq.gz 3598529018 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 bfa21ea5-8ebb-468a-9a8d-08281ddfa934 8375c6eb81d5f09305f4585a19d0c56a {"aliquot_tag": "ALQ_863ef1c9", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.RNA-Seq.S18_L005_R2.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R2_001.fastq.gz 3973847597 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 23023be8-439d-4de3-96f7-29739cf6c500 f968056ea9fb1d37ebc8a01491709304 {"aliquot_tag": "ALQ_863ef1c9", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.RNA-Seq.S28_L007_R1.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 4248129777 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 09204ce0-68b2-469b-bdf0-f2300ffb5261 ba6e450707eec4b1256b9df941183311 {"aliquot_tag": "ALQ_2309952d", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.RNA-Seq.S28_L007_R2.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4795234915 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 6f2d50f6-8e83-4113-92c1-4a88dd64abc2 c5f4687998977c8ea786f038a7cb8672 {"aliquot_tag": "ALQ_2309952d", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.RNA-Seq.transcriptome.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.transcriptome.gdc_realn.bam 7231384065 BAM transcriptome harmonized CPTAC3 3a23cc25-5812-4005-b298-fe7cc5834a9a 4e2986b25d88b4d804a066a90d9cfbcb {"aliquot_tag": "ALQ_863ef1c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.RNA-Seq.transcriptome.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.transcriptome.gdc_realn.bam 10989097460 BAM transcriptome harmonized CPTAC3 8dd2f548-69d8-4497-a3af-95bff0c7bae6 84c5a59b36d1c88b6079101c571f11fd {"aliquot_tag": "ALQ_2309952d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.WGS.N C3L-02654 LUAD WGS blood_normal CPT0205290002 CPT0205290002.WholeGenome.RP-1303.bam 85436004676 BAM submitted_aligned CPTAC3 42067b50-11cb-4bc3-b22e-4c435f837759 0c46b64e4b848ce24fc08f6fdf89d6e8 {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02654.WGS.N.hg38 C3L-02654 LUAD WGS blood_normal CPT0205290002 1d5f98ff-08ed-42b4-8860-a001c6daf5bc_wgs_gdc_realn.bam 128662443074 BAM harmonized CPTAC3 db223147-200e-40e3-829e-7c0a7764e117 a6bbfd148a2658c31a15a78ceb48d49c {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02654.WGS.T C3L-02654 LUAD WGS tumor CPT0205140006 CPT0205140006.WholeGenome.RP-1303.bam 90000922576 BAM submitted_aligned CPTAC3 578c8a82-e0d2-40df-9c8c-96f062bbbe4d 982d89d84973a1d5975f6ee307330d2b {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.WGS.T.hg38 C3L-02654 LUAD WGS tumor CPT0205140006 aa3dd3eb-75de-489f-bece-cf760cdbbf1f_wgs_gdc_realn.bam 131093375590 BAM harmonized CPTAC3 f8ad9c33-028c-417e-8a4c-c556cdb01b36 5970fa08080e1f27d19f4bd9ac1b5b13 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.WXS.A C3L-02654 LUAD WXS tissue_normal CPT0205180007 CPT0205180007.WholeExome.RP-1303.bam 42472605145 BAM submitted_aligned CPTAC3 0fdc69e8-63d1-41d6-bd0f-392552658a8a 9d06eff2f4226e7eabc3510170c6f12d {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.WXS.A.hg38 C3L-02654 LUAD WXS tissue_normal CPT0205180007 89c3681e-9002-4026-9a2c-9f955c714643_wxs_gdc_realn.bam 58069615119 BAM harmonized CPTAC3 8cd296e1-2fd9-4f7a-bba4-67d6bdebcf41 3c22863028d516189859a86030346622 {"aliquot_tag": "ALQ_141552b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02654.WXS.N C3L-02654 LUAD WXS blood_normal CPT0205290002 CPT0205290002.WholeExome.RP-1303.bam 29624002337 BAM submitted_aligned CPTAC3 6a69baaf-ec1e-4f46-942e-6df88ad1dff4 336d54045b91ec952bfbbe33cfcc9c8a {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02654.WXS.N.hg38 C3L-02654 LUAD WXS blood_normal CPT0205290002 1d5f98ff-08ed-42b4-8860-a001c6daf5bc_wxs_gdc_realn.bam 40769095618 BAM harmonized CPTAC3 cfcbfce1-9939-4fa6-bf02-758c2c705652 5067ab5c317cf3159480da41ab8aed56 {"aliquot_tag": "ALQ_cadffaba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02654.WXS.T C3L-02654 LUAD WXS tumor CPT0205140006 CPT0205140006.WholeExome.RP-1303.bam 26036032796 BAM submitted_aligned CPTAC3 89aa50d9-20b2-43dc-a3bc-cc84fc018e2d 2fe4b925973eccb166708ad92a941a84 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02654.WXS.T.hg38 C3L-02654 LUAD WXS tumor CPT0205140006 aa3dd3eb-75de-489f-bece-cf760cdbbf1f_wxs_gdc_realn.bam 36342998223 BAM harmonized CPTAC3 1b9fbe1c-a3d7-4780-bd7d-0f42c084a445 00a05eac8a470ac40e0c5516c1e2d870 {"aliquot_tag": "ALQ_b3b688bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.MethArray.Green.A C3L-02660 LSCC Methylation_Array tissue_normal CPT0202740006 203219760081_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 0087ea19-9af3-494b-8491-10a9f1734ae5 b466fd124e1f9c6c1be400b4d52a54da {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.MethArray.Green.T C3L-02660 LSCC Methylation_Array tumor CPT0202720006 203219650006_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0bfd8f83-8ec7-408b-80fb-9709a4dc8764 51a4cf3cf7bb1176493f0473f8456da9 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.MethArray.Red.A C3L-02660 LSCC Methylation_Array tissue_normal CPT0202740006 203219760081_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 54c96aad-d3f2-4457-a788-891a8e257e12 601d3445a311c6dee0967941e311ddb9 {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.MethArray.Red.T C3L-02660 LSCC Methylation_Array tumor CPT0202720006 203219650006_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 05ba3f94-c8f5-41e7-81a3-722cf7afb721 d8e58ca92e70e81ea787edb1f40df199 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.miRNA-Seq.A.hg38 C3L-02660 LSCC miRNA-Seq tissue_normal CPT0202740009 1ba03e14-c77b-4acb-856f-c75c38328049_mirnaseq_gdc_realn.bam 408659981 BAM harmonized CPTAC3 6f047913-f118-41d9-b756-832816a7fc45 e8952a0022fac6eb2795c5f30de1e198 {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.miRNA-Seq.S11_L001_R1.T C3L-02660 LSCC miRNA-Seq tumor CPT0202720009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTCAGA_S11_L001_R1_001.unaln.bam 272289181 BAM S11_L001_R1 submitted_unaligned CPTAC3 3a1e2ad6-5f8c-4d9e-9d89-95e477a261ef 5a0358af0e9b0b9f5b52febfd5b51f67 {"aliquot_tag": "ALQ_bfb7bd1e", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.miRNA-Seq.S44_L004_R1.A C3L-02660 LSCC miRNA-Seq tissue_normal CPT0202740009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACAGTG_S44_L004_R1_001.unaln.bam 368454658 BAM S44_L004_R1 submitted_unaligned CPTAC3 ad7eb074-1035-4aee-a170-7a880cdb1234 20c1dce079a9a9427d58b8bd48a18b64 {"aliquot_tag": "ALQ_30f748be", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.miRNA-Seq.T.hg38 C3L-02660 LSCC miRNA-Seq tumor CPT0202720009 5c4eba16-0144-40b6-aa31-d4068ee7f27b_mirnaseq_gdc_realn.bam 297837753 BAM harmonized CPTAC3 35646274-2047-45ee-8889-d106da89bd80 aa20e5129607572cbf861bc26edda2dd {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.RNA-Seq.chimeric.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.chimeric.gdc_realn.bam 160099939 BAM chimeric harmonized CPTAC3 b0ce1b09-8324-4f04-a7e2-dd2f5e4e6aca e04e7d56ccb3097d1ba673de119d3ad8 {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.RNA-Seq.chimeric.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.chimeric.gdc_realn.bam 73171391 BAM chimeric harmonized CPTAC3 b72bbc26-1fd1-4d52-b00c-c655d1906f97 62880cbe9626778a885da6a7b00db798 {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.RNA-Seq.genomic.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.genomic.gdc_realn.bam 7531180273 BAM genomic harmonized CPTAC3 5bd290f4-735b-46d3-ae07-6bbf52965b1b 0df619c0264f3e5a1cc653f1f9fdb0ed {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.RNA-Seq.genomic.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.genomic.gdc_realn.bam 8320047997 BAM genomic harmonized CPTAC3 c580100d-b38c-4216-b0d9-58af3e1c180c f9dac4e0d6b3b3b7bc8de1d2897a34a4 {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.RNA-Seq.S5_L008_R1.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3463798613 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 4b4f25d4-86f3-42bd-a24c-8b6ba4444114 8d9adc9411ab8393978573111f9ebb64 {"aliquot_tag": "ALQ_30f748be", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.RNA-Seq.S5_L008_R2.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3906929544 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 c1aff8d7-7509-42cb-8576-7b78419db74c 59e70815a1f2eb221d85f71de348b590 {"aliquot_tag": "ALQ_30f748be", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.RNA-Seq.S8_L008_R1.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R1_001.fastq.gz 3261157949 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 74a02796-23b8-4058-8ad9-5e7d0a293bca aaff9c3033633415e26dbbd023f8b1fb {"aliquot_tag": "ALQ_bfb7bd1e", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.RNA-Seq.S8_L008_R2.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R2_001.fastq.gz 3288875186 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 8f915fb8-ea14-41e0-9132-7074288407a4 bf5324e2c02c89705317010b66c4d5cb {"aliquot_tag": "ALQ_bfb7bd1e", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.RNA-Seq.transcriptome.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.transcriptome.gdc_realn.bam 8266345122 BAM transcriptome harmonized CPTAC3 103449ae-6898-45dc-bc38-d4db41b159b2 f8e73a4bb7e04fab35ad106f4411a295 {"aliquot_tag": "ALQ_30f748be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.RNA-Seq.transcriptome.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.transcriptome.gdc_realn.bam 7882206706 BAM transcriptome harmonized CPTAC3 afc2051f-6692-4afa-8459-f4b527fbe247 85c3c3b68bee70440d83e8c0e8966c34 {"aliquot_tag": "ALQ_bfb7bd1e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.WGS.A C3L-02660 LSCC WGS tissue_normal CPT0202740006 CPT0202740006.WholeGenome.RP-1303.bam 59434989618 BAM submitted_aligned CPTAC3 70cbd5d8-5b90-4783-ade5-3a7e04b70898 d6ebd8527714b9e6e1214ab8828eb601 {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.WGS.A.hg38 C3L-02660 LSCC WGS tissue_normal CPT0202740006 ac3ceb98-8878-4f7e-bedf-e4c65aa39b49_wgs_gdc_realn.bam 85661384855 BAM harmonized CPTAC3 b3588cb3-b835-423f-865d-506fe829e28d 1c57cb5246dbae599e20700b8d9733ab {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.WGS.N C3L-02660 LSCC WGS blood_normal CPT0202840002 CPT0202840002.WholeGenome.RP-1303.bam 64383391307 BAM submitted_aligned CPTAC3 b8aaaef9-9cda-4646-a3ca-b46004523f8c 6a48e1ca88017c138de0bd774894e13a {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02660.WGS.N.hg38 C3L-02660 LSCC WGS blood_normal CPT0202840002 24b56530-504e-4423-a833-238e49cb0d18_wgs_gdc_realn.bam 95035411940 BAM harmonized CPTAC3 6ec09acd-1d07-4040-8d36-c147a3f86972 c6025fabc212e0a0afd77ed34bc6bea6 {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02660.WGS.T C3L-02660 LSCC WGS tumor CPT0202720006 CPT0202720006.WholeGenome.RP-1303.bam 58903357664 BAM submitted_aligned CPTAC3 9ca540d5-ca4b-4b23-8f8d-213871c84c06 32b834bd4691c0722f222f6531b5733c {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.WGS.T.hg38 C3L-02660 LSCC WGS tumor CPT0202720006 de5ff6c5-79fc-4c44-9d16-79b73e2e8e06_wgs_gdc_realn.bam 85038312517 BAM harmonized CPTAC3 13fb6720-c0ec-4762-b4d9-fe0d3a1774fe eb96b52123a2bd58cb9d33ba8ea1ca98 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.WXS.A C3L-02660 LSCC WXS tissue_normal CPT0202740006 CPT0202740006.WholeExome.RP-1303.bam 22981205746 BAM submitted_aligned CPTAC3 bb12921a-e949-4916-84ea-6a78129138a1 9d5c2ce9d4aaa93db55a076a60fd9c3f {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.WXS.A.hg38 C3L-02660 LSCC WXS tissue_normal CPT0202740006 ac3ceb98-8878-4f7e-bedf-e4c65aa39b49_wxs_gdc_realn.bam 31357280751 BAM harmonized CPTAC3 063dad54-9bd8-4a5d-b9e5-773941d37583 383ab35e84348d0e46affa00bce3c54d {"aliquot_tag": "ALQ_a048552f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02660.WXS.N C3L-02660 LSCC WXS blood_normal CPT0202840002 CPT0202840002.WholeExome.RP-1303.bam 27366217719 BAM submitted_aligned CPTAC3 d7e3e912-3cc1-46a1-87c7-d836d252f614 3668ee857aa4833fd8eb5132663f22b7 {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02660.WXS.N.hg38 C3L-02660 LSCC WXS blood_normal CPT0202840002 24b56530-504e-4423-a833-238e49cb0d18_wxs_gdc_realn.bam 36908150834 BAM harmonized CPTAC3 8123ed94-befe-4a1f-9cc1-234fbd1f8504 b14d1906e95bbcd2f4548460be51b33e {"aliquot_tag": "ALQ_567323e3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02660.WXS.T C3L-02660 LSCC WXS tumor CPT0202720006 CPT0202720006.WholeExome.RP-1303.bam 19710001885 BAM submitted_aligned CPTAC3 85def9ab-2c1e-4979-a3aa-3f90fb88d30c ccd9383fb94d4f9b891177aca88ccaa5 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02660.WXS.T.hg38 C3L-02660 LSCC WXS tumor CPT0202720006 de5ff6c5-79fc-4c44-9d16-79b73e2e8e06_wxs_gdc_realn.bam 27523946363 BAM harmonized CPTAC3 fdec05f0-1ba5-4b72-8419-dfbe26275b9f 784273f0c425c490e26117fca46928a8 {"aliquot_tag": "ALQ_2f08a08f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.MethArray.Green.A C3L-02661 LUAD Methylation_Array tissue_normal CPT0192430006 203028200100_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5c2edd9e-380a-4cc1-b0ba-bea67e4160a0 efda2c14ab38db2e1a458cdfb39c44a7 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.MethArray.Green.T C3L-02661 LUAD Methylation_Array tumor CPT0192380006 203219670054_R05C01_Grn.idat 13676232 IDAT Green NA CPTAC3 3a97330d-048f-4c8a-ac43-7546e49eca58 e65d5750d56e113f9b3267900c29479c {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.MethArray.Red.A C3L-02661 LUAD Methylation_Array tissue_normal CPT0192430006 203028200100_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 2c163ac6-2662-48de-96f8-658b2d5fc976 8aa6f5986436dcf162aa4527a2464cfe {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.MethArray.Red.T C3L-02661 LUAD Methylation_Array tumor CPT0192380006 203219670054_R05C01_Red.idat 13676232 IDAT Red NA CPTAC3 c6c0651d-3072-4a65-921c-018805a8419a 331180345d23f476a8f983ca3cc1e9b0 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.miRNA-Seq.A.hg38 C3L-02661 LUAD miRNA-Seq tissue_normal CPT0192430009 7ff7662e-351f-4a1d-aa7a-57794a7698f6_mirnaseq_gdc_realn.bam 300772175 BAM harmonized CPTAC3 d92323d6-e76a-421b-a61d-9f81e1f704df 17ba014ce1f2a81ec77cb9460ba15814 {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.miRNA-Seq.S13_L006_R1.A C3L-02661 LUAD miRNA-Seq tissue_normal CPT0192430009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L006_R1_001.unaln.bam 274411550 BAM S13_L006_R1 submitted_unaligned CPTAC3 e4ef7368-68e9-4e75-b5f7-6fa044157db4 7cdce59a175002616c9394085b35f092 {"aliquot_tag": "ALQ_2281c1ee", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.miRNA-Seq.S26_L006_R1.T C3L-02661 LUAD miRNA-Seq tumor CPT0192380009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L006_R1_001.unaln.bam 220890246 BAM S26_L006_R1 submitted_unaligned CPTAC3 a1b8bee1-ed82-491c-8298-76bcd16dee27 7192dee76fef34464e6634d81cddf269 {"aliquot_tag": "ALQ_4854c047", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.miRNA-Seq.T.hg38 C3L-02661 LUAD miRNA-Seq tumor CPT0192380009 946d6792-bf86-4716-bbcc-b59dc9203aaf_mirnaseq_gdc_realn.bam 241394137 BAM harmonized CPTAC3 aa9542d6-4762-4ef1-b255-c357f296c3c7 2a45885e9686e46bddca80c143951bc6 {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.RNA-Seq.chimeric.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.chimeric.gdc_realn.bam 44920469 BAM chimeric harmonized CPTAC3 721f0aec-9c8a-4ebe-89c1-53bb9e500085 22a431f382e4a28ed4bba9568fcff7c5 {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.RNA-Seq.chimeric.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.chimeric.gdc_realn.bam 49024073 BAM chimeric harmonized CPTAC3 d73a7e35-639e-4488-9cfb-23bb39d9e274 c113e5275d7e16e3d50acc1851f7cd3a {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.RNA-Seq.genomic.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.genomic.gdc_realn.bam 8358143794 BAM genomic harmonized CPTAC3 c2bb8f7e-81f4-492b-b7d8-ce50d82c63e2 abfc5489050812e2c5a6118a1c30c851 {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.RNA-Seq.genomic.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.genomic.gdc_realn.bam 10032728459 BAM genomic harmonized CPTAC3 fef2b70d-253f-4ce4-87dc-5af30c291f37 52cf89c46810ccd1e3967e4d98a89511 {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.RNA-Seq.S13_L004_R1.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R1_001.fastq.gz 3818022004 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 29105d2e-da1a-4b01-a43d-978652b480da 87e1ab539f999af58880ed7e5f57d6a7 {"aliquot_tag": "ALQ_2281c1ee", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.RNA-Seq.S13_L004_R2.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R2_001.fastq.gz 4231112363 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 0a73c3fd-b91a-4933-b213-bcd787861324 d3086a1baba82d0f1b172fad585ae046 {"aliquot_tag": "ALQ_2281c1ee", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.RNA-Seq.S1_L007_R1.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R1_001.fastq.gz 4594708120 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 8bf8131a-1bfd-420a-a617-29cf7cd5595a 2a741b496fed6995b6756f39cb32c08d {"aliquot_tag": "ALQ_4854c047", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.RNA-Seq.S1_L007_R2.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R2_001.fastq.gz 5042475468 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 dd066b3b-d5c8-45c4-a854-221d47dae8f2 751de8299d1dc0f23312ccf958108889 {"aliquot_tag": "ALQ_4854c047", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.RNA-Seq.transcriptome.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.transcriptome.gdc_realn.bam 9543528959 BAM transcriptome harmonized CPTAC3 ec4edf51-d90f-43de-b521-ddb99f233076 a58b0ca83ffdc075ca397677ef3ed00c {"aliquot_tag": "ALQ_2281c1ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.RNA-Seq.transcriptome.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.transcriptome.gdc_realn.bam 12057220734 BAM transcriptome harmonized CPTAC3 0bc59df5-71c7-4874-8098-27a1263355c2 acfc732e03cefed283ee3e18c5dc8693 {"aliquot_tag": "ALQ_4854c047", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.WGS.A C3L-02661 LUAD WGS tissue_normal CPT0192430006 CPT0192430006.WholeGenome.RP-1303.bam 64125734112 BAM submitted_aligned CPTAC3 d3ba9ba3-46e6-4bec-a731-6f5df4ac3761 47c726dd3058731c5d9d023af34c0369 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.WGS.A.hg38 C3L-02661 LUAD WGS tissue_normal CPT0192430006 1fc581d1-064b-4142-805d-4567983c81b8_wgs_gdc_realn.bam 92448623248 BAM harmonized CPTAC3 7355c31a-2f71-43a8-98d8-a228241365de fb3a56e913c59bef85d20588a27d4791 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.WGS.N C3L-02661 LUAD WGS blood_normal CPT0192520002 CPT0192520002.WholeGenome.RP-1303.bam 53351426033 BAM submitted_aligned CPTAC3 5447f1db-7a65-4c02-a105-8ec5c9ded524 7cdfaa5c341f88ac2decd8d2b46e2805 {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02661.WGS.N.hg38 C3L-02661 LUAD WGS blood_normal CPT0192520002 b80dc241-e5cc-4d1b-8322-4e0a0258717a_wgs_gdc_realn.bam 78295912022 BAM harmonized CPTAC3 f719b72d-fa85-4e32-9adc-63e4c2721cd5 ee26d9fdb5993519f79cc37182ed05af {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02661.WGS.T C3L-02661 LUAD WGS tumor CPT0192380006 CPT0192380006.WholeGenome.RP-1303.bam 61719442900 BAM submitted_aligned CPTAC3 ab99dc5b-fe50-4579-bfc8-63db17b0a2ef 3a33a3e0eda918d491f67875e3acbf36 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.WGS.T.hg38 C3L-02661 LUAD WGS tumor CPT0192380006 b1b5326f-11ac-4f1e-86b8-da1238672b6e_wgs_gdc_realn.bam 90521274557 BAM harmonized CPTAC3 f24991a2-0ecb-4e5a-8652-4c5beee7e947 a77ce16f8b143c0a0b2622ced7698acc {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.WXS.A C3L-02661 LUAD WXS tissue_normal CPT0192430006 CPT0192430006.WholeExome.RP-1303.bam 20547518369 BAM submitted_aligned CPTAC3 e0642b6b-f751-4345-877a-33d55c6f9f5b 53674ee979bbbd1d147deeba74776294 {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.WXS.A.hg38 C3L-02661 LUAD WXS tissue_normal CPT0192430006 1fc581d1-064b-4142-805d-4567983c81b8_wxs_gdc_realn.bam 28456350582 BAM harmonized CPTAC3 0c66fd21-1350-4e46-a47b-43399d2fa9bf 643e8615dafc694823697d25e5a89f5f {"aliquot_tag": "ALQ_b23edc7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02661.WXS.N C3L-02661 LUAD WXS blood_normal CPT0192520002 CPT0192520002.WholeExome.RP-1303.bam 25521113234 BAM submitted_aligned CPTAC3 7dbfd238-0901-48be-a9a3-08bf97b69f91 e766c2d52bbe18b3f904a6369bb9d8d5 {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02661.WXS.N.hg38 C3L-02661 LUAD WXS blood_normal CPT0192520002 b80dc241-e5cc-4d1b-8322-4e0a0258717a_wxs_gdc_realn.bam 34942219444 BAM harmonized CPTAC3 5b8a86a3-1882-4fe3-973a-b087fd0a1d81 a340647eedeff59d9adf8ca6f7b5f6ce {"aliquot_tag": "ALQ_436fe273", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02661.WXS.T C3L-02661 LUAD WXS tumor CPT0192380006 CPT0192380006.WholeExome.RP-1303.bam 24406776690 BAM submitted_aligned CPTAC3 bd64ab8b-45c1-4899-82e9-2067ab77c9cd 65faea6f317e051ab4a97f7f56246216 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02661.WXS.T.hg38 C3L-02661 LUAD WXS tumor CPT0192380006 b1b5326f-11ac-4f1e-86b8-da1238672b6e_wxs_gdc_realn.bam 34693138193 BAM harmonized CPTAC3 0a9f0c8c-1d97-45e2-9676-8e950999659d dd98cfde4ab2e59b27f8e770bb131512 {"aliquot_tag": "ALQ_d8ebddd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02662.MethArray.Green.T C3L-02662 GBM Methylation_Array tumor CPT0267260007 204367470124_R01C01_Grn.idat 13677882 IDAT Green NA CPTAC3 82c8ca56-2684-4765-a578-2e7bf88e7092 ed1e18fa322864ac07569922da31597f {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.MethArray.Red.T C3L-02662 GBM Methylation_Array tumor CPT0267260007 204367470124_R01C01_Red.idat 13677882 IDAT Red NA CPTAC3 a2a1c65f-dfd5-4e80-b324-e61a9246ef79 db96241568b6752e83c89baf92c05d84 {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.miRNA-Seq.S3_L001_R1.T C3L-02662 GBM miRNA-Seq tumor CPT0267260010 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L001_R1_001.unaln.bam 199751137 BAM S3_L001_R1 submitted_unaligned CPTAC3 8928ea06-faf4-403a-960b-44a8c1eb2bf9 ca0f2e8b53be1378be1064f35966981b {"aliquot_tag": "ALQ_ee6a25a8", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.miRNA-Seq.T.hg38 C3L-02662 GBM miRNA-Seq tumor CPT0267260010 f7cda4c0-bf0f-46f1-8e41-dd38276704d2_mirnaseq_gdc_realn.bam 222751978 BAM harmonized CPTAC3 901bda8c-9af1-4cdc-b9ad-dc3b87519c1c 8565473034ce56ff219f14d7babc860b {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.RNA-Seq.chimeric.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.chimeric.gdc_realn.bam 19895747 BAM chimeric harmonized CPTAC3 4c853ed7-08f4-4596-9418-cc0a1c38d04f 46c6b5e869429c0ddb94dbf3b4ca7a0c {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.RNA-Seq.genomic.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.genomic.gdc_realn.bam 5823690031 BAM genomic harmonized CPTAC3 a25b2b99-7128-485e-82b6-9a07c91e6226 9570a75a41a1eea0e9440bb76ba5173b {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.RNA-Seq.S22_L006_R1.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R1_001.fastq.gz 2651283628 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 356afdb9-db72-4527-92b6-80619daf6746 d26d68a575049099ea1e7251c56d81ff {"aliquot_tag": "ALQ_ee6a25a8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.RNA-Seq.S22_L006_R2.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 45e95154-6823-4405-a610-9a42d4bc5f10 af9dca0e728ed9683ff8bceaf129692c {"aliquot_tag": "ALQ_ee6a25a8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.RNA-Seq.transcriptome.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.transcriptome.gdc_realn.bam 6831316217 BAM transcriptome harmonized CPTAC3 45667f60-dae5-434e-be74-b644d8b705f3 d0505781e8ecf7e66e24d591e0fefd2b {"aliquot_tag": "ALQ_ee6a25a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.WGS.N C3L-02662 GBM WGS blood_normal CPT0267300002 CPT0267300002.WholeGenome.RP-2158.bam 27090249079 BAM submitted_aligned CPTAC3 6cc40b60-9b11-429c-8f10-f679c36a10fc ff6b361feffc7b1144fd26ce74ede696 {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02662.WGS.N.hg38 C3L-02662 GBM WGS blood_normal CPT0267300002 ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wgs_gdc_realn.bam 81374312262 BAM harmonized CPTAC3 bfb3b98e-daac-48dc-bd69-85c8886a45c5 2a79a68ab2ae20bc1d9410c7c80c18d1 {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02662.WGS.T C3L-02662 GBM WGS tumor CPT0267260007 CPT0267260007.WholeGenome.RP-2158.bam 27579170879 BAM submitted_aligned CPTAC3 8af676a8-afcb-4679-81a6-934725ebdbdb 3b5ecf88bcf0f0be09c67e0cdbe66c37 {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.WGS.T.hg38 C3L-02662 GBM WGS tumor CPT0267260007 48a74119-daeb-4577-9c10-649d7d71f72e_wgs_gdc_realn.bam 81794446548 BAM harmonized CPTAC3 c3462153-48c2-4ced-9b84-4179b0f08cb3 41513633e8fcfeb10817e83e3e2eb66f {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.WXS.N C3L-02662 GBM WXS blood_normal CPT0267300002 CPT0267300002.WholeExome.RP-1303.bam 32172440712 BAM submitted_aligned CPTAC3 11e768f6-702e-4217-9405-d7e2e8b3549a 8e18f4ac617a324a85f0ec82e50538a5 {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02662.WXS.N.hg38 C3L-02662 GBM WXS blood_normal CPT0267300002 ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wxs_gdc_realn.bam 43541229598 BAM harmonized CPTAC3 483ee610-f803-4aa9-953c-6d1a197e0e8e 91de3c54c23bfc369782f0ddf2e8c46f {"aliquot_tag": "ALQ_5d6353c0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02662.WXS.T C3L-02662 GBM WXS tumor CPT0267260007 CPT0267260007.WholeExome.RP-1303.bam 18842860859 BAM submitted_aligned CPTAC3 548aa728-a7c4-4fd3-b9a1-56debfc0fb08 a60030039eab8e53bd06465c9a3101b4 {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02662.WXS.T.hg38 C3L-02662 GBM WXS tumor CPT0267260007 48a74119-daeb-4577-9c10-649d7d71f72e_wxs_gdc_realn.bam 26349424274 BAM harmonized CPTAC3 77333b37-7fa5-4ebf-b262-6d92a3d5aef3 402faeb4447d65a8c64664a08effd65f {"aliquot_tag": "ALQ_6915814a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02665.MethArray.Green.A C3L-02665 LSCC Methylation_Array tissue_normal CPT0192590010 203220070171_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6d72576a-ee69-4cb9-b497-6c97aece1cce 91ae62b92b69201ad3d5791c26c71954 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.MethArray.Green.T C3L-02665 LSCC Methylation_Array tumor CPT0192540007 203219670118_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ca78f25c-fcaa-4d90-bab0-5167fede8e10 c5092c9948faab56c7e495b4190e93e4 {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.MethArray.Red.A C3L-02665 LSCC Methylation_Array tissue_normal CPT0192590010 203220070171_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 10d2a675-e327-41e5-9b09-23527ea1c147 084b3f68c57b785f0d4ba92fba4433a5 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.MethArray.Red.T C3L-02665 LSCC Methylation_Array tumor CPT0192540007 203219670118_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 a2c24c81-e3d7-437e-bc95-80ea7434909f d99b7401a0a22f9a3c7417e6a5686b6a {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.miRNA-Seq.A.hg38 C3L-02665 LSCC miRNA-Seq tissue_normal CPT0192590007 db9906f8-3e4f-42c0-989d-7d7f354930bb_mirnaseq_gdc_realn.bam 223010931 BAM harmonized CPTAC3 90298cf3-b20a-438c-9bc0-04ad26e668df d2d88b2e3bbe76ab64a76cd49dcebb8a {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.miRNA-Seq.S21_L008_R1.T C3L-02665 LSCC miRNA-Seq tumor CPT0192540010 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L008_R1_001.unaln.bam 170000518 BAM S21_L008_R1 submitted_unaligned CPTAC3 c6a8a9b5-f268-4f48-ae6f-0bd758aba500 fc5c83554c15e784c01bc747876c8e0d {"aliquot_tag": "ALQ_3b3a47be", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.miRNA-Seq.S39_L002_R1.A C3L-02665 LSCC miRNA-Seq tissue_normal CPT0192590007 190206_UNC31-K00269_0191_AH2WY5BBXY_TAGCTT_S39_L002_R1_001.unaln.bam 204159256 BAM S39_L002_R1 submitted_unaligned CPTAC3 c4953e87-f12e-4f33-9585-f51f19c21dc1 a7756cf1cf3669ba38bebba7b99646bd {"aliquot_tag": "ALQ_44d527ed", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.miRNA-Seq.T.hg38 C3L-02665 LSCC miRNA-Seq tumor CPT0192540010 c3669206-de2a-489e-8606-60d8d967e625_mirnaseq_gdc_realn.bam 183676841 BAM harmonized CPTAC3 aa07d4a2-50b3-49a0-ab53-bf167518672e 3a6907b48e1daf5d809063ba85e37139 {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.RNA-Seq.chimeric.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.chimeric.gdc_realn.bam 107667861 BAM chimeric harmonized CPTAC3 62f80d54-7277-4a9c-8518-4ff7c1bade39 e826b994426c733df64bfb9a7b49afea {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.RNA-Seq.chimeric.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.chimeric.gdc_realn.bam 369394684 BAM chimeric harmonized CPTAC3 d98819b6-f7da-4c6d-b272-e8ec3cf81caa fe5184dc2ee653a987ce8d8edd0f56b0 {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.RNA-Seq.genomic.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.genomic.gdc_realn.bam 10064192624 BAM genomic harmonized CPTAC3 d057fab5-89c6-41af-96fc-95b1ff1382aa 4a88acf55a53540d88aebdb02f78d411 {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.RNA-Seq.genomic.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.genomic.gdc_realn.bam 10779354350 BAM genomic harmonized CPTAC3 46af26d9-4a1d-40b6-bd74-65326d192f3b 67ae7dd5c2b71bdfc865485457eee4ad {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.RNA-Seq.S20_L005_R1.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4358670008 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 911034e6-d213-4670-aa95-42621a8126b8 e4b3d9ecc4d863180a4dc70780a3d104 {"aliquot_tag": "ALQ_3b3a47be", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.RNA-Seq.S20_L005_R2.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4920994757 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 18bf9f8e-1f05-4202-baff-bd878b107a4f acc0806fc3c60c8df549be446e7377a4 {"aliquot_tag": "ALQ_3b3a47be", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.RNA-Seq.S3_L005_R1.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R1_001.fastq.gz 4523020406 FASTQ S3_L005_R1 submitted_unaligned CPTAC3 4f8d52cb-6616-49c1-8335-2b70f90ecbb8 26d0f8155f8f34ad0aa70b7400334103 {"aliquot_tag": "ALQ_44d527ed", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.RNA-Seq.S3_L005_R2.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R2_001.fastq.gz 5016031121 FASTQ S3_L005_R2 submitted_unaligned CPTAC3 33d2a666-0d27-43a9-bbf8-e3c7a27f59ae 7f071415e5e4f91ebda99efdbb6746a0 {"aliquot_tag": "ALQ_44d527ed", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.RNA-Seq.transcriptome.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.transcriptome.gdc_realn.bam 10282928607 BAM transcriptome harmonized CPTAC3 a2201aaf-712b-4489-9826-a1bb2112c4ce 6e136fe499f60438e7d82146dece46f3 {"aliquot_tag": "ALQ_44d527ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.RNA-Seq.transcriptome.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.transcriptome.gdc_realn.bam 11801958603 BAM transcriptome harmonized CPTAC3 d0abde78-6492-4a60-8437-7371120db5b3 b8e52956e488531f2ea421d71fe27072 {"aliquot_tag": "ALQ_3b3a47be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.WGS.A C3L-02665 LSCC WGS tissue_normal CPT0192590010 CPT0192590010.WholeGenome.RP-1303.bam 70185282591 BAM submitted_aligned CPTAC3 0d5dc11e-646d-479d-a2f1-a40d6f37399b e2a2c0e5d85dcaf9477694b2c1f6d858 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.WGS.A.hg38 C3L-02665 LSCC WGS tissue_normal CPT0192590010 79331dda-0cea-40c9-b02c-d051078d3f8e_wgs_gdc_realn.bam 103397245521 BAM harmonized CPTAC3 10c52c5f-9dc1-47bd-9430-abe69e502b17 be1e5e856009ba03f7e6ad7dbc3e68f0 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.WGS.N C3L-02665 LSCC WGS blood_normal CPT0192700002 CPT0192700002.WholeGenome.RP-1303.bam 64649164894 BAM submitted_aligned CPTAC3 622d34bd-b3bc-4618-9144-4e8c0c9b33cc 6d173998fe5ad492c3ab900ceb6672bf {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02665.WGS.N.hg38 C3L-02665 LSCC WGS blood_normal CPT0192700002 0340681b-f04e-4e51-8a70-319412cbe7f4_wgs_gdc_realn.bam 94340005437 BAM harmonized CPTAC3 c8276e38-9884-486f-a161-fe9cb40fed6f f077588942ff82aee3b8a397fa4785e0 {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02665.WGS.T C3L-02665 LSCC WGS tumor CPT0192540007 CPT0192540007.WholeGenome.RP-1303.bam 57939994079 BAM submitted_aligned CPTAC3 162d6029-9e84-4eba-9e3d-5c6b776d343d 6c7c870add2ef71e76df2208713a3a7a {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.WGS.T.hg38 C3L-02665 LSCC WGS tumor CPT0192540007 6673be4a-ae2d-48ae-a437-b47350c5a48c_wgs_gdc_realn.bam 84512606625 BAM harmonized CPTAC3 43cd46a6-d168-402e-9ec5-2ae662c2df58 89c75b8f679c42040a55ea7cee58253c {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.WXS.A C3L-02665 LSCC WXS tissue_normal CPT0192590010 CPT0192590010.WholeExome.RP-1303.bam 24534949077 BAM submitted_aligned CPTAC3 a41b9324-95a9-4199-9178-d2d3b3b58795 aa43aae15b78abf961fa36353b995f04 {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.WXS.A.hg38 C3L-02665 LSCC WXS tissue_normal CPT0192590010 79331dda-0cea-40c9-b02c-d051078d3f8e_wxs_gdc_realn.bam 34088161391 BAM harmonized CPTAC3 3aea7de4-650a-44fb-89f9-88f6a597b11e 9b5cace4eafa9b2ba05f0114f7a8751f {"aliquot_tag": "ALQ_c3aa830f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02665.WXS.N C3L-02665 LSCC WXS blood_normal CPT0192700002 CPT0192700002.WholeExome.RP-1303.bam 23863998898 BAM submitted_aligned CPTAC3 4484fe89-926a-4f52-abdc-3f8fe4b33c8f a9197912b7914839ff00af44c97479c1 {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02665.WXS.N.hg38 C3L-02665 LSCC WXS blood_normal CPT0192700002 0340681b-f04e-4e51-8a70-319412cbe7f4_wxs_gdc_realn.bam 33439410567 BAM harmonized CPTAC3 9db5fa11-bd55-4e4e-b441-21e5c745a879 78d4ba895708d48fc6276b4f025342f8 {"aliquot_tag": "ALQ_74671018", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02665.WXS.T C3L-02665 LSCC WXS tumor CPT0192540007 CPT0192540007.WholeExome.RP-1303.bam 25938116609 BAM submitted_aligned CPTAC3 af362beb-109d-4284-a39e-74e4a6ef03f7 314caf19a8e079c4e7035c7aa7dfff47 {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02665.WXS.T.hg38 C3L-02665 LSCC WXS tumor CPT0192540007 6673be4a-ae2d-48ae-a437-b47350c5a48c_wxs_gdc_realn.bam 35856639443 BAM harmonized CPTAC3 eb4eb84a-346f-4c1a-acd7-fec383c35d9d 0ac8bacdccc7f80ba6f8909c461edbb6 {"aliquot_tag": "ALQ_bc45e35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.MethArray.Green.A C3L-02669 LSCC Methylation_Array tissue_normal CPT0202400007 203220070151_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 485d5f88-421c-4b91-8c09-96655ae2bafc 2aa659e41f213a4334e70e7b3b395901 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.MethArray.Green.T C3L-02669 LSCC Methylation_Array tumor CPT0202350007 203219670066_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bdbf31e6-673b-43e6-8e73-0df51c8fe237 2201bbbbf83d45c600b587fd9dc69019 {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.MethArray.Red.A C3L-02669 LSCC Methylation_Array tissue_normal CPT0202400007 203220070151_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 4924fd03-3837-4ddc-99f5-34f999b582eb a98aafb5d04215783689ed4e8d5dd947 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.MethArray.Red.T C3L-02669 LSCC Methylation_Array tumor CPT0202350007 203219670066_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 9a95118b-9a76-450b-b073-b13d6d8e6214 69dc56a5fc035668dabbd8e55f989023 {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.miRNA-Seq.A.hg38 C3L-02669 LSCC miRNA-Seq tissue_normal CPT0202400010 8112cf8f-7fae-40c4-8963-13abe37fb965_mirnaseq_gdc_realn.bam 267758234 BAM harmonized CPTAC3 6a156eab-9633-40a3-a726-8ca558c81245 3c2843fff4f56bbf5d40e04030483b8d {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.miRNA-Seq.S13_L001_R1.T C3L-02669 LSCC miRNA-Seq tumor CPT0202350010 190206_UNC31-K00269_0191_AH2WY5BBXY_CTAGCT_S13_L001_R1_001.unaln.bam 237018931 BAM S13_L001_R1 submitted_unaligned CPTAC3 e3b00195-8da1-4580-91aa-d640c9653772 9df0dcd5e108e943198dbacfdb46d68a {"aliquot_tag": "ALQ_f6c1aafd", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.miRNA-Seq.S45_L004_R1.A C3L-02669 LSCC miRNA-Seq tissue_normal CPT0202400010 190206_UNC31-K00269_0191_AH2WY5BBXY_TGACCA_S45_L004_R1_001.unaln.bam 242724962 BAM S45_L004_R1 submitted_unaligned CPTAC3 c880af95-42eb-4151-b6fb-4981fe37b7b6 95a9d4c6d8758c59735aacbadc71afa7 {"aliquot_tag": "ALQ_23241535", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.miRNA-Seq.T.hg38 C3L-02669 LSCC miRNA-Seq tumor CPT0202350010 e4eb107c-3bb7-4362-a39d-fea6fd382d8f_mirnaseq_gdc_realn.bam 256703933 BAM harmonized CPTAC3 38ace166-d082-47ab-9b83-3e6b96a74934 8f0ba1e781f6382fa947651458910010 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.RNA-Seq.chimeric.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.chimeric.gdc_realn.bam 98438137 BAM chimeric harmonized CPTAC3 ea809121-bbab-409b-a028-ef4b409f66e4 545077ad09e72602be03023e8509e366 {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.RNA-Seq.chimeric.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.chimeric.gdc_realn.bam 137340437 BAM chimeric harmonized CPTAC3 79ea1535-2f20-4598-a185-3a743306f311 e8a238b3917ccda67ea7a8a4ffcdece9 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.RNA-Seq.genomic.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.genomic.gdc_realn.bam 8929634265 BAM genomic harmonized CPTAC3 7d3e5d8e-d6d9-457b-bca7-bfe177b63b80 2526019214ecbde8162285170ec795b7 {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.RNA-Seq.genomic.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.genomic.gdc_realn.bam 8644109244 BAM genomic harmonized CPTAC3 595b010b-4e15-4cb6-9944-fc291883d03a bf48fc071604050659f5880ad04e1754 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.RNA-Seq.S11_L008_R1.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R1_001.fastq.gz 3692403747 FASTQ S11_L008_R1 submitted_unaligned CPTAC3 a7850847-6b0d-4716-8bd9-e3a82e347f22 87ce1acf96100a0eb20435857f2b23be {"aliquot_tag": "ALQ_f6c1aafd", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.RNA-Seq.S11_L008_R2.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R2_001.fastq.gz 3950076857 FASTQ S11_L008_R2 submitted_unaligned CPTAC3 4107e3b6-5695-4113-a3a4-e365c6b34f4e dcdb935846083b9fc97854d0b538b4e1 {"aliquot_tag": "ALQ_f6c1aafd", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.RNA-Seq.S24_L007_R1.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R1_001.fastq.gz 4199314894 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 06be14d7-ed37-40be-8acb-5314fc60c8cf 2f54e62dc9d54e404e8da29571d162ce {"aliquot_tag": "ALQ_23241535", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.RNA-Seq.S24_L007_R2.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R2_001.fastq.gz 4388810999 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 c0abdf9c-0eef-48a2-a405-b8d7aa71adc5 a3857ab67151d031e6b8359f768f5bcf {"aliquot_tag": "ALQ_23241535", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.RNA-Seq.transcriptome.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.transcriptome.gdc_realn.bam 9947310323 BAM transcriptome harmonized CPTAC3 2c5958d4-8d88-4057-908e-512e30c0de77 1efa9d903666395e455d9fad2a689f27 {"aliquot_tag": "ALQ_23241535", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.RNA-Seq.transcriptome.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.transcriptome.gdc_realn.bam 9483324334 BAM transcriptome harmonized CPTAC3 bc3e3333-8f1a-4aa8-9171-4bd2a659351e a60bf5f42a9228c6b63a9b476e864be7 {"aliquot_tag": "ALQ_f6c1aafd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.WGS.A C3L-02669 LSCC WGS tissue_normal CPT0202400007 CPT0202400007.WholeGenome.RP-1303.bam 59737920421 BAM submitted_aligned CPTAC3 e6c535c6-784b-4d7d-a4ea-f0ff59fd0404 fd2bc82dae3e5975da91744070be26e4 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.WGS.A.hg38 C3L-02669 LSCC WGS tissue_normal CPT0202400007 4c3ef2d4-483c-4dfe-a215-ce07100e7acf_wgs_gdc_realn.bam 86773259935 BAM harmonized CPTAC3 3e15b469-8b14-4300-96ac-e12b491f4d95 bae8527e65f95ad0ca0da5145d37b86a {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.WGS.N C3L-02669 LSCC WGS blood_normal CPT0202510002 CPT0202510002.WholeGenome.RP-1303.bam 54999952826 BAM submitted_aligned CPTAC3 e535e832-8507-493c-a93a-6eb6a88af79a 3d9e475babeb56f9bb98ac3cb32335a1 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02669.WGS.N.hg38 C3L-02669 LSCC WGS blood_normal CPT0202510002 76b8bd0d-a73f-44c1-95f4-e059baba9717_wgs_gdc_realn.bam 80025204906 BAM harmonized CPTAC3 61410268-e0d8-40a3-9b7b-a81fb9005901 8ec773cabd83125e3111b0864ca739f1 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02669.WGS.T C3L-02669 LSCC WGS tumor CPT0202350007 CPT0202350007.WholeGenome.RP-1303.bam 71042003978 BAM submitted_aligned CPTAC3 b879ba2b-bcf8-438c-9321-a5df715d727a 8ced9e7062e000b4906c2c71fc2b9533 {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.WGS.T.hg38 C3L-02669 LSCC WGS tumor CPT0202350007 3683abf1-0725-4c58-aa84-dda4cc85ed85_wgs_gdc_realn.bam 103535141933 BAM harmonized CPTAC3 5177ac64-c113-4dbe-af5e-8ce4c5bd3325 16306eff853588a5ab9f60a948f7e02f {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.WXS.A C3L-02669 LSCC WXS tissue_normal CPT0202400007 CPT0202400007.WholeExome.RP-1303.bam 24673804229 BAM submitted_aligned CPTAC3 8c696a3b-8ca3-493a-bc30-fc6b17f45afe ec29ad733c7935c711c2d914c91f5759 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.WXS.A.hg38 C3L-02669 LSCC WXS tissue_normal CPT0202400007 4c3ef2d4-483c-4dfe-a215-ce07100e7acf_wxs_gdc_realn.bam 34022385765 BAM harmonized CPTAC3 e01c19e0-d9e8-4b97-aec2-927ff02130a0 2e1b9d33f43bcbfde8aedf6628016027 {"aliquot_tag": "ALQ_a45bb1d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02669.WXS.N C3L-02669 LSCC WXS blood_normal CPT0202510002 CPT0202510002.WholeExome.RP-1303.bam 22973190954 BAM submitted_aligned CPTAC3 8182532d-f473-418d-af99-f7eb9bfb68ab c30bd8b686768a2c65792ee91287c551 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02669.WXS.N.hg38 C3L-02669 LSCC WXS blood_normal CPT0202510002 76b8bd0d-a73f-44c1-95f4-e059baba9717_wxs_gdc_realn.bam 31654712800 BAM harmonized CPTAC3 60a2da6d-6b97-4294-b514-bcba20bd27d0 d9f8750bc1edca2b1bee4a069d451655 {"aliquot_tag": "ALQ_220dbf4d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02669.WXS.T C3L-02669 LSCC WXS tumor CPT0202350007 CPT0202350007.WholeExome.RP-1303.bam 22103818789 BAM submitted_aligned CPTAC3 f4f6cd9c-f304-4cc2-a22e-533dc603dcef a3cbf3dd23b96cc9c14bb16ff89ba32b {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02669.WXS.T.hg38 C3L-02669 LSCC WXS tumor CPT0202350007 3683abf1-0725-4c58-aa84-dda4cc85ed85_wxs_gdc_realn.bam 30600985401 BAM harmonized CPTAC3 b390c351-79c1-445f-9ca6-e9d745acd5a3 d3b4e0c40366eab43e6723fcf65bbf1d {"aliquot_tag": "ALQ_71be0e1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.MethArray.Green.T C3L-02701 PDA Methylation_Array tumor CPT0227930007 203561450041_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d780e987-19c4-4dbe-aba8-cdecf09f2f4a 64ee9271c14759ff6ed6458c33164613 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.MethArray.Red.T C3L-02701 PDA Methylation_Array tumor CPT0227930007 203561450041_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 e8d10bc9-ab17-4f08-adb4-21d548f2a41d ebda7f7962f5d7ccbf249a8e5cd2cec6 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.miRNA-Seq.S15_L004_R1.T C3L-02701 PDA miRNA-Seq tumor CPT0227930010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTATAC_S15_L004_R1_001.unaln.bam 280665592 BAM S15_L004_R1 submitted_unaligned CPTAC3 df6d47e2-755b-4f99-94c8-8683551f6450 bd3aef874043e654b37873855b757d01 {"aliquot_tag": "ALQ_c80754e1", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.miRNA-Seq.T.hg38 C3L-02701 PDA miRNA-Seq tumor CPT0227930010 036f56d3-7235-4027-96ca-c0d58460c6c5_mirnaseq_gdc_realn.bam 317852009 BAM harmonized CPTAC3 38e08549-c188-4e0c-9a65-badeaf009a46 2a3184f411496ef83515af73430e98b1 {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.RNA-Seq.chimeric.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.chimeric.gdc_realn.bam 32368993 BAM chimeric harmonized CPTAC3 a2024df8-7483-44a0-aad5-b1187ad78152 db843f066536ec0849df029edd2f6a40 {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.RNA-Seq.genomic.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.genomic.gdc_realn.bam 8682494302 BAM genomic harmonized CPTAC3 08f0d47b-2153-41de-9d73-cd0ae5e70a80 bc4c0814d1d0247e15b5486b48394ce6 {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.RNA-Seq.S12_L003_R1.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R1_001.fastq.gz 3946761587 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 c8d5f272-d5fa-4f82-9b12-5ca458271e35 58074ffb9934347a8151d52e9e8339df {"aliquot_tag": "ALQ_c80754e1", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.RNA-Seq.S12_L003_R2.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R2_001.fastq.gz 4490638753 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 4e44f521-6100-40b3-b70f-8031e8d022c9 9e6c973c5a2dd504f7af50a5cc572c1d {"aliquot_tag": "ALQ_c80754e1", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.RNA-Seq.transcriptome.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.transcriptome.gdc_realn.bam 12568322953 BAM transcriptome harmonized CPTAC3 ee303213-9fd6-4c15-81de-e1752ea2ef76 d785ecc5b316e7d0cdbfc5d4c61b4aed {"aliquot_tag": "ALQ_c80754e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.Targeted.T C3L-02701 PDA Targeted_Sequencing tumor CPT0227930007 CPT0227930007.CustomSelection.RP-1303.PDO-18786.bam 5841968173 BAM submitted_aligned CPTAC3 5c8ad51e-9364-48df-b88e-a77e2f3c9406 022834f2ac5361166c10a289ff367032 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.Targeted.T.hg38 C3L-02701 PDA Targeted_Sequencing tumor CPT0227930007 b094badf-1417-4766-aa99-0d8ef35fcf39_targetedsequencing_gdc_realn.bam 8321610766 BAM harmonized CPTAC3 741d63bd-f399-47a3-9cd8-2db1898f75ba 90ca096c73ad751ef2eb45e4e33dc35b {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.WGS.N C3L-02701 PDA WGS blood_normal CPT0228080006 CPT0228080006.WholeGenome.RP-1303.bam 58766887673 BAM submitted_aligned CPTAC3 a6047090-cd8e-41ff-b391-b5f354de6b49 f1e1c21ab7e4cbf2de761db3b7a9fceb {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02701.WGS.N.hg38 C3L-02701 PDA WGS blood_normal CPT0228080006 4b9778c1-f481-4848-a179-d1cadaba6491_wgs_gdc_realn.bam 85687698016 BAM harmonized CPTAC3 4aa07956-2f19-4be7-8a49-bee74e9439f7 ad91072561b1436dff1ee02d4d20964a {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02701.WGS.T C3L-02701 PDA WGS tumor CPT0227930007 CPT0227930007.WholeGenome.RP-1303.bam 64957875007 BAM submitted_aligned CPTAC3 7e3f1d4c-e0eb-4125-a969-da003b75d724 b8f5bdb72ca0fb460c164dda317c2157 {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.WGS.T.hg38 C3L-02701 PDA WGS tumor CPT0227930007 b094badf-1417-4766-aa99-0d8ef35fcf39_wgs_gdc_realn.bam 93420807546 BAM harmonized CPTAC3 bc75bb21-726b-4c29-a4e2-782395cc376e b855736aa0eba5bda4cd98b712583cea {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.WXS.N C3L-02701 PDA WXS blood_normal CPT0228080006 CPT0228080006.WholeExome.RP-1303.bam 30773512770 BAM submitted_aligned CPTAC3 3f37ccf9-04b4-4f1a-813b-f8e704b9ca76 b6f2a03df5d9e3a02b9b4a742e1fd8eb {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02701.WXS.N.hg38 C3L-02701 PDA WXS blood_normal CPT0228080006 4b9778c1-f481-4848-a179-d1cadaba6491_wxs_gdc_realn.bam 42517587492 BAM harmonized CPTAC3 148c15d5-dba2-48ed-b3e8-29d021750822 7ab8cce89b2960bf2c825985d8aaae41 {"aliquot_tag": "ALQ_9ee8d0a5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02701.WXS.T C3L-02701 PDA WXS tumor CPT0227930007 CPT0227930007.WholeExome.RP-1303.bam 53334014231 BAM submitted_aligned CPTAC3 2bdbec67-c876-44ee-8324-0897ac45bee7 188ad86a42999f8e70ea9dc3c6b99d8c {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02701.WXS.T.hg38 C3L-02701 PDA WXS tumor CPT0227930007 b094badf-1417-4766-aa99-0d8ef35fcf39_wxs_gdc_realn.bam 73506317458 BAM harmonized CPTAC3 97192635-ae5e-438a-ae14-93d599d766a3 2228820565000028be125f296d706acc {"aliquot_tag": "ALQ_4f78f003", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.MethArray.Green.T C3L-02704 GBM Methylation_Array tumor CPT0189750007 203219650136_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a6bb4aa5-859a-4e6f-8b8b-a9d67d5eef10 8dad9f9a87b55c96e35ca2e231da6015 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.MethArray.Red.T C3L-02704 GBM Methylation_Array tumor CPT0189750007 203219650136_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 f23bdbf7-7064-43d1-a2fa-45afa7f10484 1c1e76bc93a87d767399633750522e93 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.miRNA-Seq.S33_L004_R1.T C3L-02704 GBM miRNA-Seq tumor CPT0189750010 181219_UNC31-K00269_0173_BHYGJJBBXX_CATGGC_S33_L004_R1_001.unaln.bam 211477747 BAM S33_L004_R1 submitted_unaligned CPTAC3 7fd57ea2-72de-43d6-89ec-c291b4fffee0 f0f4ffecc9cea04cec418e57925aeb73 {"aliquot_tag": "ALQ_853f9b61", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.miRNA-Seq.T.hg38 C3L-02704 GBM miRNA-Seq tumor CPT0189750010 696abcce-ec1a-4b95-9f94-f199f2c0565d_mirnaseq_gdc_realn.bam 237401097 BAM harmonized CPTAC3 ae19c6e5-80c0-43b1-9660-af87307297c7 d840e77e0afc5e9f3913d3367d5d6720 {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.RNA-Seq.chimeric.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.chimeric.gdc_realn.bam 171377954 BAM chimeric harmonized CPTAC3 ba00c3f2-c144-46c3-a21a-cf7dc9d764a1 d798617a766de3134d0cb38e9ca5ceaf {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.RNA-Seq.genomic.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.genomic.gdc_realn.bam 6588485698 BAM genomic harmonized CPTAC3 e7489018-3b6f-432e-a459-b7048f451b05 c3218fbc084fea439c2d961458de3790 {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.RNA-Seq.S6_L002_R1.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 2928245025 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 a3d39428-6703-4d2b-b5d7-246b40fbf69a 0f3371677f8ca81ce849b32f455bb069 {"aliquot_tag": "ALQ_853f9b61", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.RNA-Seq.S6_L002_R2.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3086328739 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 ba57ec8b-f0e7-4a29-be8c-069fe59c0721 4d546473833b5a186cdf55c17300ca98 {"aliquot_tag": "ALQ_853f9b61", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.RNA-Seq.transcriptome.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.transcriptome.gdc_realn.bam 7596220066 BAM transcriptome harmonized CPTAC3 b7c787ab-97fb-404d-884d-f65bbca82576 47b48d8b09d35f8cc7f226167ceea3dd {"aliquot_tag": "ALQ_853f9b61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.WGS.N C3L-02704 GBM WGS blood_normal CPT0190660002 CPT0190660002.WholeGenome.RP-1303.bam 71105654131 BAM submitted_aligned CPTAC3 88268abe-703d-4b4d-bd40-fa3a225b9c64 537cb4f5a6b6e0c920867c187cd903cd {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02704.WGS.N.hg38 C3L-02704 GBM WGS blood_normal CPT0190660002 1c6e61d2-277c-4f6a-be33-abc32bc1ab3e_wgs_gdc_realn.bam 101670983024 BAM harmonized CPTAC3 7c528b0b-1718-40ef-9a3d-a5380193191c 7e450e5f5d22ec1ed4967c9f9e479f48 {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02704.WGS.T C3L-02704 GBM WGS tumor CPT0189750007 CPT0189750007.WholeGenome.RP-1303.bam 63184966428 BAM submitted_aligned CPTAC3 30757d38-bd1a-42cd-a079-c0d257a3dcc6 717a9b882631f6ac6f2c98e70165f5f6 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.WGS.T.hg38 C3L-02704 GBM WGS tumor CPT0189750007 8e4b5a6a-fdac-4c85-aa19-e5bb3b250c03_wgs_gdc_realn.bam 91618904423 BAM harmonized CPTAC3 e26c1848-6bd1-4b4b-8bd0-791b69f45900 9686c984aa0899e6c30b339898f7e998 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.WXS.N C3L-02704 GBM WXS blood_normal CPT0190660002 CPT0190660002.WholeExome.RP-1303.bam 20791123513 BAM submitted_aligned CPTAC3 20cce083-7185-42df-8b2f-ece9e01b513f cc2d286a39af967f2beddeff573aefe4 {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02704.WXS.N.hg38 C3L-02704 GBM WXS blood_normal CPT0190660002 1c6e61d2-277c-4f6a-be33-abc32bc1ab3e_wxs_gdc_realn.bam 28339806836 BAM harmonized CPTAC3 a840eb1e-abb4-46f5-af74-3ac58829da81 4bb962c5619689d379a8987582a4ea56 {"aliquot_tag": "ALQ_a7e42734", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02704.WXS.T C3L-02704 GBM WXS tumor CPT0189750007 CPT0189750007.WholeExome.RP-1303.bam 20935431504 BAM submitted_aligned CPTAC3 eaa249e0-0391-430a-b739-50c189e6a950 815b00718326063437c35b1a0771ad2f {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02704.WXS.T.hg38 C3L-02704 GBM WXS tumor CPT0189750007 8e4b5a6a-fdac-4c85-aa19-e5bb3b250c03_wxs_gdc_realn.bam 28583891269 BAM harmonized CPTAC3 f0c27168-d11e-4d6e-81fb-33a0b8bae0b6 00411d26abeed8213ada0d3b09657350 {"aliquot_tag": "ALQ_2403f83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.MethArray.Green.T C3L-02705 GBM Methylation_Array tumor CPT0189650007 203219670106_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 ca06806c-ecb3-4a0f-b507-3bfecd78e322 328250fb7e6c33356474bc22dcbf8410 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.MethArray.Red.T C3L-02705 GBM Methylation_Array tumor CPT0189650007 203219670106_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 17e6a759-7efd-41c5-a621-7a4c97415cd6 70b16ae4a93dec43470f093036aaa14e {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.miRNA-Seq.S32_L004_R1.T C3L-02705 GBM miRNA-Seq tumor CPT0189650010 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGGCG_S32_L004_R1_001.unaln.bam 194061849 BAM S32_L004_R1 submitted_unaligned CPTAC3 0482cc45-5688-47d8-823d-ae7df35e31de 1f48622a505a1b68c019aad7079c9451 {"aliquot_tag": "ALQ_4e6348c4", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.miRNA-Seq.T.hg38 C3L-02705 GBM miRNA-Seq tumor CPT0189650010 fbc5104f-754e-4779-8fb4-d63c9092ad3d_mirnaseq_gdc_realn.bam 212856196 BAM harmonized CPTAC3 eac73477-bb32-46a9-8694-a580aa5f40b5 ce3e31c236a49c7e485bee068179d121 {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.RNA-Seq.chimeric.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.chimeric.gdc_realn.bam 100506614 BAM chimeric harmonized CPTAC3 c1d9428e-21d9-4155-bf3d-f7fc2c1f2ddb b2bb3b94d38fd599a2631621725c2e14 {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.RNA-Seq.genomic.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.genomic.gdc_realn.bam 7711026633 BAM genomic harmonized CPTAC3 b6d06af1-6378-4942-bb43-2a33e1808a39 c88cd6a3c57d90ab79bfb1126dbdd51f {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.RNA-Seq.S9_L003_R1.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3323782301 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 31ad97f9-8f0a-4939-9b27-aeecc345925d fdb618addcb5c7d16260e6059d1cecc4 {"aliquot_tag": "ALQ_4e6348c4", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.RNA-Seq.S9_L003_R2.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3599944937 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 593ce048-3cf6-4a27-8c02-e81b2b48d95f edfa38aabdcbe976b181ef2ca8e404a1 {"aliquot_tag": "ALQ_4e6348c4", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.RNA-Seq.transcriptome.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.transcriptome.gdc_realn.bam 8175750568 BAM transcriptome harmonized CPTAC3 9cb576c9-3a85-476a-966b-04c5cd655d6c dfc1b932382d6bccec2b558d005d51e7 {"aliquot_tag": "ALQ_4e6348c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.scRNA-Seq.S3_L003_R1.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R1_001.fastq.gz 10955017630 FASTQ S3_L003_R1 submitted_unaligned CPTAC3 1f4d56f2-61d3-4c05-a994-a1db1fdc5323 d9e00f0c966dd4c2969aa4defa82b200 {"aliquot_tag": "ALQ_3e09bc4b", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.scRNA-Seq.S3_L003_R2.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R2_001.fastq.gz 25217192545 FASTQ S3_L003_R2 submitted_unaligned CPTAC3 4ef75921-f1d4-427e-88f2-2fd9e86fba92 8714fda1daa56a390c20e745dcdf5987 {"aliquot_tag": "ALQ_3e09bc4b", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.scRNA-Seq.T.hg38 C3L-02705 GBM scRNA-Seq tumor CPT0189650015 possorted_genome_bam.bam 29846950870 BAM harmonized CPTAC3 6e9347b8-7198-44e1-a4b9-2262ebf107b6 0a4091d16f4eae4f8d96aa76e9509025 {"aliquot_tag": "ALQ_3e09bc4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.WGS.N C3L-02705 GBM WGS blood_normal CPT0190640002 CPT0190640002.WholeGenome.RP-1303.bam 55336589099 BAM submitted_aligned CPTAC3 6218ca2a-3ec4-4ef6-83a3-ae00c9d83d12 e5149cb9803dd4cc33bb0c89b4d38afb {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02705.WGS.N.hg38 C3L-02705 GBM WGS blood_normal CPT0190640002 a820c7e7-180a-47e8-ad00-12e32236bbdf_wgs_gdc_realn.bam 80337375536 BAM harmonized CPTAC3 54197100-227c-4760-9df9-5c9f6e7df598 e6bde5807083cf3c0c2a1b14c76511c0 {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02705.WGS.T C3L-02705 GBM WGS tumor CPT0189650007 CPT0189650007.WholeGenome.RP-1303.bam 62119934828 BAM submitted_aligned CPTAC3 9127722a-7be2-446a-8639-7759914ab1f2 7f3328e7e724154bbc4cd53c3410fe17 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.WGS.T.hg38 C3L-02705 GBM WGS tumor CPT0189650007 07ff70d4-4e47-4ed0-8f19-32be9fe53cf1_wgs_gdc_realn.bam 89834325696 BAM harmonized CPTAC3 5b07e964-cdcf-4556-a369-372532307df2 533b30e31ac85d8cb31a4deea64e205d {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.WXS.N C3L-02705 GBM WXS blood_normal CPT0190640002 CPT0190640002.WholeExome.RP-1303.bam 23921223199 BAM submitted_aligned CPTAC3 ace72054-6526-4d3a-9533-911155e4464e 427d601d652892189e7d494b9dc1fb7d {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02705.WXS.N.hg38 C3L-02705 GBM WXS blood_normal CPT0190640002 a820c7e7-180a-47e8-ad00-12e32236bbdf_wxs_gdc_realn.bam 33111858068 BAM harmonized CPTAC3 39e2b5f2-e30a-41b3-ae85-d36f12964c1d 2e5f2ef571fa89637ebea76b52a02ddd {"aliquot_tag": "ALQ_dd247454", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02705.WXS.T C3L-02705 GBM WXS tumor CPT0189650007 CPT0189650007.WholeExome.RP-1303.bam 24686699586 BAM submitted_aligned CPTAC3 c9f72d80-1d36-4c66-9e10-739c0bb00d26 a8987953917b3a8bda80749ebd2285f1 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02705.WXS.T.hg38 C3L-02705 GBM WXS tumor CPT0189650007 07ff70d4-4e47-4ed0-8f19-32be9fe53cf1_wxs_gdc_realn.bam 33929758687 BAM harmonized CPTAC3 71546011-670f-4b34-b4b2-90737ea5a3f7 85e1a488e5c1cab3fd56cbb58d0ffce1 {"aliquot_tag": "ALQ_c91cec26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02706.MethArray.Green.T C3L-02706 GBM Methylation_Array tumor CPT0216870007 203219670141_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1a62ba08-ade9-4254-8210-dbf11ff99343 1af4f0e034a5c6578962c68fe6561d10 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.MethArray.Red.T C3L-02706 GBM Methylation_Array tumor CPT0216870007 203219670141_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 7c8ebcc3-759a-4b62-a9ed-10bc4968db35 4f055c1cf6d1c4b20d8413a601555f9f {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.miRNA-Seq.S31_L002_R1.T C3L-02706 GBM miRNA-Seq tumor CPT0216870014 190206_UNC31-K00269_0191_AH2WY5BBXY_GTCCGC_S31_L002_R1_001.unaln.bam 207830996 BAM S31_L002_R1 submitted_unaligned CPTAC3 e6335b8b-2292-4316-955b-51c476263285 5565b88dc8c24f2cdfecbaf6db314adf {"aliquot_tag": "ALQ_d94ee9ca", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.miRNA-Seq.T.hg38 C3L-02706 GBM miRNA-Seq tumor CPT0216870014 f65e7d30-8882-4c0d-b0ba-7934041d7d6d_mirnaseq_gdc_realn.bam 231905166 BAM harmonized CPTAC3 8b1d07c7-7b2e-4bc0-828d-087ac09628a9 16c70f9ef5a2ba219af17fd88c90ad16 {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.RNA-Seq.chimeric.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.chimeric.gdc_realn.bam 52745807 BAM chimeric harmonized CPTAC3 1cdebccb-7586-40fd-bbd8-cfc5fdf29ed4 350dc8f006e5fa661b7538667e5325c8 {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.RNA-Seq.genomic.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.genomic.gdc_realn.bam 8007299304 BAM genomic harmonized CPTAC3 f559ffca-c104-4236-8bf2-c7d77d93e2b8 0cb6ab0587db3c38c1e7227ba23bcd6c {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.RNA-Seq.S2_L001_R1.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3577817850 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 89b695ac-d4e9-4449-9e46-18dd3b95dd2f 23be2f34c0466462df51a6acd20e6320 {"aliquot_tag": "ALQ_d94ee9ca", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.RNA-Seq.S2_L001_R2.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3658901575 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 4b7ebdc9-1b68-4257-b5d8-6c53874971c7 2b84d54e44322af43fa3fa0962a6d11e {"aliquot_tag": "ALQ_d94ee9ca", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.RNA-Seq.transcriptome.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.transcriptome.gdc_realn.bam 7331508021 BAM transcriptome harmonized CPTAC3 1d23c67b-5a08-4136-921f-659331c35c1d bc19bb19595c2bab342432bee64fc648 {"aliquot_tag": "ALQ_d94ee9ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.WGS.N C3L-02706 GBM WGS blood_normal CPT0217920002 CPT0217920002.WholeGenome.RP-1303.bam 65117153902 BAM submitted_aligned CPTAC3 87c10938-fdb6-45f2-939b-78aae1375233 6176b9d5d2b55733ce3bf0f36692aa9c {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02706.WGS.N.hg38 C3L-02706 GBM WGS blood_normal CPT0217920002 755e756f-026d-41db-b701-7dee13a7f30a_wgs_gdc_realn.bam 95185893534 BAM harmonized CPTAC3 5864910a-3263-423a-ad31-5d2638cac474 ec005c5e3855c6873c14f5b138f51d21 {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02706.WGS.T C3L-02706 GBM WGS tumor CPT0216870007 CPT0216870007.WholeGenome.RP-1303.bam 54922463277 BAM submitted_aligned CPTAC3 544f870a-65e7-4c2b-9da8-4aaee81fbf07 a73c8cc696ca05f8a48bd5392df18a23 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.WGS.T.hg38 C3L-02706 GBM WGS tumor CPT0216870007 f407d022-d4a4-4304-80ee-652c521fbc00_wgs_gdc_realn.bam 78286655024 BAM harmonized CPTAC3 74572b3f-7094-4862-b48b-035d8bbdb9ae f4f65ee60164fe6756aed19fe3f4fba7 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.WXS.N C3L-02706 GBM WXS blood_normal CPT0217920002 CPT0217920002.WholeExome.RP-1303.bam 27187264690 BAM submitted_aligned CPTAC3 f3ca4ac0-8521-4e7a-a431-c78a55b6533c 7a03ea09e89c909e4ae3a60b8c3a7ec5 {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02706.WXS.N.hg38 C3L-02706 GBM WXS blood_normal CPT0217920002 755e756f-026d-41db-b701-7dee13a7f30a_wxs_gdc_realn.bam 37280785369 BAM harmonized CPTAC3 d000b0bf-3505-4f58-a283-b1c2fd66b729 1ecca774472e9b2325eb8cc3b571e00b {"aliquot_tag": "ALQ_8cfd2adf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02706.WXS.T C3L-02706 GBM WXS tumor CPT0216870007 CPT0216870007.WholeExome.RP-1303.bam 42654629061 BAM submitted_aligned CPTAC3 8555013f-824d-46a2-95ea-9c166e87e24c 1d73e1f56d31e8e8710c0a26dd61ac17 {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02706.WXS.T.hg38 C3L-02706 GBM WXS tumor CPT0216870007 f407d022-d4a4-4304-80ee-652c521fbc00_wxs_gdc_realn.bam 58952405318 BAM harmonized CPTAC3 5f00b85e-ca3c-4dd5-8d77-a55e3bdce193 aab3b67710f3476faecf7f70fcd2d19f {"aliquot_tag": "ALQ_595c8931", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02707.MethArray.Green.T C3L-02707 GBM Methylation_Array tumor CPT0189850007 203219640158_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3e401d02-97e1-47ea-8b0f-711ccb39756f 26b7cdfbe5c4dfde81635af8ef1867de {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.MethArray.Red.T C3L-02707 GBM Methylation_Array tumor CPT0189850007 203219640158_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 b78a956c-f337-439d-a20d-a4d83f2e7c01 b5b7eeb11876eb94ef20b2242acdccbd {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.miRNA-Seq.S34_L004_R1.T C3L-02707 GBM miRNA-Seq tumor CPT0189850010 181219_UNC31-K00269_0173_BHYGJJBBXX_CATTTT_S34_L004_R1_001.unaln.bam 270683244 BAM S34_L004_R1 submitted_unaligned CPTAC3 e1acdb9b-3516-463e-9343-8f188333637f fd5ac622642d1b1096ffd23d640ac2f9 {"aliquot_tag": "ALQ_746929b4", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.miRNA-Seq.T.hg38 C3L-02707 GBM miRNA-Seq tumor CPT0189850010 c33d7302-616a-4893-b241-0599dfc4911e_mirnaseq_gdc_realn.bam 299226557 BAM harmonized CPTAC3 e9fce34c-8c44-4d5b-a8f8-019dc25f3156 106507ee0385205e61956ec814501889 {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.RNA-Seq.chimeric.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.chimeric.gdc_realn.bam 152530336 BAM chimeric harmonized CPTAC3 a78c60ca-9224-4cc8-8bc2-1079a1ce7145 e32cad24ac65608750f62465ffd0291d {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.RNA-Seq.genomic.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.genomic.gdc_realn.bam 7013383356 BAM genomic harmonized CPTAC3 a8031f1b-c0ea-492f-809e-cc3c4e334bfa d52a2d6768329febb267d4de525870fe {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.RNA-Seq.S8_L002_R1.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3065849813 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 86aa2222-5a98-4edf-a4a1-4b1b2cebc0d8 5726edd296410b30b4aef46f4c672b4b {"aliquot_tag": "ALQ_746929b4", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.RNA-Seq.S8_L002_R2.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 3352987257 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 5c3ce60e-8c59-48b3-b7bf-64d8d7316fbc 457d8b52a062dc96b70c6fbbcbea10f7 {"aliquot_tag": "ALQ_746929b4", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.RNA-Seq.transcriptome.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.transcriptome.gdc_realn.bam 6521456471 BAM transcriptome harmonized CPTAC3 9a304f9e-486c-4324-93ca-9a661a0716d7 15300fedad6b1b5fd38dd56d034fa752 {"aliquot_tag": "ALQ_746929b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.WGS.N C3L-02707 GBM WGS blood_normal CPT0190680002 CPT0190680002.WholeGenome.RP-1303.bam 60440234641 BAM submitted_aligned CPTAC3 e0aca9d3-1392-4671-baa1-d81c3cacbaf1 7976e5fe04f81f09e0745d5f049363e6 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02707.WGS.N.hg38 C3L-02707 GBM WGS blood_normal CPT0190680002 5d4b375a-b83e-417f-b1f4-c4abe77a2ace_wgs_gdc_realn.bam 88170424738 BAM harmonized CPTAC3 7baf3007-3a7a-4baf-86c0-95e2232f4291 b47f68ae3327f610b158251030e5ad83 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02707.WGS.T C3L-02707 GBM WGS tumor CPT0189850007 CPT0189850007.WholeGenome.RP-1303.bam 57357982445 BAM submitted_aligned CPTAC3 d060077c-46e6-40af-8587-f7962ef68d51 95bb3c1e99e6a2ea7ca706ef4e435b56 {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.WGS.T.hg38 C3L-02707 GBM WGS tumor CPT0189850007 a6b4f8b7-1b47-4773-9ffe-e9392779cd57_wgs_gdc_realn.bam 84148083314 BAM harmonized CPTAC3 be571f73-e5d0-4922-965e-bc6c5f7d3d1e 825bf388501475840d817da8c70326bc {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.WXS.N C3L-02707 GBM WXS blood_normal CPT0190680002 CPT0190680002.WholeExome.RP-1303.bam 27534432017 BAM submitted_aligned CPTAC3 bc867051-b17d-49be-893c-e3f463d40a6d e6b979177558d4483518074051a7f005 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02707.WXS.N.hg38 C3L-02707 GBM WXS blood_normal CPT0190680002 5d4b375a-b83e-417f-b1f4-c4abe77a2ace_wxs_gdc_realn.bam 37577665999 BAM harmonized CPTAC3 b71c6c97-1da4-4705-ae37-cce3ef3661b3 ce2fcedf8017b10725e1518b28104075 {"aliquot_tag": "ALQ_18d49955", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02707.WXS.T C3L-02707 GBM WXS tumor CPT0189850007 CPT0189850007.WholeExome.RP-1303.bam 22992307854 BAM submitted_aligned CPTAC3 9d00ef43-3e90-4448-992d-0abdb37a469f 88a3644295128fbdae8841818c9378ee {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02707.WXS.T.hg38 C3L-02707 GBM WXS tumor CPT0189850007 a6b4f8b7-1b47-4773-9ffe-e9392779cd57_wxs_gdc_realn.bam 32194573527 BAM harmonized CPTAC3 30f2747d-a9ca-4f3b-8f81-5156a67453af f8b9de3da3e1a6fc894d4cdd67e365a7 {"aliquot_tag": "ALQ_f3168d56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.MethArray.Green.T C3L-02708 GBM Methylation_Array tumor CPT0189570007 203220070156_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2ca8791c-bb92-4dcc-a32c-c93802e81551 95b242e1b6e9ef4c7f9a0f2b68b8edb1 {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.MethArray.Red.T C3L-02708 GBM Methylation_Array tumor CPT0189570007 203220070156_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 14ef3c20-fccb-41e4-a1c6-c9b14093bc0e 30f5d8bd252346bdd10ad13eaf7a9095 {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.miRNA-Seq.S31_L004_R1.T C3L-02708 GBM miRNA-Seq tumor CPT0189570010 181219_UNC31-K00269_0173_BHYGJJBBXX_CACTCA_S31_L004_R1_001.unaln.bam 258533844 BAM S31_L004_R1 submitted_unaligned CPTAC3 54e61ff6-e219-4c4a-a305-e07547829b00 878ed108d8a5e5bf58cd7b3b51750a96 {"aliquot_tag": "ALQ_b237690a", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.miRNA-Seq.T.hg38 C3L-02708 GBM miRNA-Seq tumor CPT0189570010 ad0b2549-d1d8-46e9-9fd6-d29cd66f0fbc_mirnaseq_gdc_realn.bam 291342722 BAM harmonized CPTAC3 f8d59b60-c8eb-4bb9-886e-1bff21d99acc 781fd5abb36d818c3a512fc53b0f831e {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.RNA-Seq.chimeric.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.chimeric.gdc_realn.bam 150249585 BAM chimeric harmonized CPTAC3 a92542b3-585f-40b5-99f4-f9d5dbd19925 f9fd8299236ca7c645c2bd4b31c20f5c {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.RNA-Seq.genomic.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.genomic.gdc_realn.bam 9410543807 BAM genomic harmonized CPTAC3 bd948e8a-5eba-4d6e-9f08-459a3018885b 4287f6ec014031c51d178ddf38ef9743 {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.RNA-Seq.S4_L001_R1.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 4345690373 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 096c41c4-c85b-4617-9334-4d1c4501e59d 5b12d99b2854d54fe0dde719150b873e {"aliquot_tag": "ALQ_b237690a", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.RNA-Seq.S4_L001_R2.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4718587824 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 5cd8f085-f849-4d31-88f5-dca6ffae2523 5f39f63249d3e7531edb4e26af75da24 {"aliquot_tag": "ALQ_b237690a", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.RNA-Seq.transcriptome.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.transcriptome.gdc_realn.bam 9055149563 BAM transcriptome harmonized CPTAC3 b469cde6-b694-4189-8521-689a87bb4cbd 1b53fd74f1318fbddf509d328a200e02 {"aliquot_tag": "ALQ_b237690a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.WGS.N C3L-02708 GBM WGS blood_normal CPT0190620002 CPT0190620002.WholeGenome.RP-1303.bam 65812188063 BAM submitted_aligned CPTAC3 a92fa05a-311a-4552-8b0b-e0f34bf47cfa 56640a4948195f252730a8569d0ef9b7 {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02708.WGS.N.hg38 C3L-02708 GBM WGS blood_normal CPT0190620002 2425979c-83fa-4c6b-a510-2efbadb018aa_wgs_gdc_realn.bam 95071768833 BAM harmonized CPTAC3 f2c47d0e-a53e-49e9-b3ed-f22d8804ca29 aaef3f53fd7e66ba4ca80a1a1306edb4 {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02708.WGS.T C3L-02708 GBM WGS tumor CPT0189570007 CPT0189570007.WholeGenome.RP-1303.bam 58008736343 BAM submitted_aligned CPTAC3 b69de777-11cb-48e1-b14f-980cdffa29a6 d53f1bcc04472c34a2fb1eb06a25891a {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.WGS.T.hg38 C3L-02708 GBM WGS tumor CPT0189570007 15a8ff7c-4a6d-4c89-ba29-1ddc51583f5c_wgs_gdc_realn.bam 82438224320 BAM harmonized CPTAC3 87dbd50f-3269-44f5-af60-29c0a6e39b6e 0807017b3f941dc0764b34acdc95815e {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.WXS.N C3L-02708 GBM WXS blood_normal CPT0190620002 CPT0190620002.WholeExome.RP-1303.bam 27463502847 BAM submitted_aligned CPTAC3 cd571367-4faa-484a-b3af-831860e9654e f87bd69bb9cd2444ba50de9d65ca20fe {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02708.WXS.N.hg38 C3L-02708 GBM WXS blood_normal CPT0190620002 2425979c-83fa-4c6b-a510-2efbadb018aa_wxs_gdc_realn.bam 37560775611 BAM harmonized CPTAC3 2bc3e092-fb76-4260-b4bc-d2fbe2f6c697 95fc41a3e5679725ade6cb1857631a01 {"aliquot_tag": "ALQ_526481f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02708.WXS.T C3L-02708 GBM WXS tumor CPT0189570007 CPT0189570007.WholeExome.RP-1303.bam 31507578969 BAM submitted_aligned CPTAC3 1ce9d9c2-99f5-4e0f-8110-9a1dc7c5f967 953fd3db597ca1298e561098edc92756 {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02708.WXS.T.hg38 C3L-02708 GBM WXS tumor CPT0189570007 15a8ff7c-4a6d-4c89-ba29-1ddc51583f5c_wxs_gdc_realn.bam 43683093040 BAM harmonized CPTAC3 ccbee74f-f7ce-4dc1-b7c4-5635c0623069 bd0bc6dacb9c4470735196859aee0e3f {"aliquot_tag": "ALQ_3548cde8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02741.MethArray.Green.T C3L-02741 UCEC Methylation_Array tumor CPT0188190007 203561620080_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 37598309-2b69-405b-9294-d03b72a35bed 87588bf450e804efc2d2cfcc9dc9f9d5 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.MethArray.Red.T C3L-02741 UCEC Methylation_Array tumor CPT0188190007 203561620080_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e706c7c4-bb3f-48ff-8181-2f0bc4200f2a 740d7a13e62b56aa5d1c798b2c94cb47 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.miRNA-Seq.S16_L001_R1.T C3L-02741 UCEC miRNA-Seq tumor CPT0188190010 190508_UNC31-K00269_0215_BH7FYKBBXY_CCGTCC_S16_L001_R1_001.unaln.bam 225865193 BAM S16_L001_R1 submitted_unaligned CPTAC3 8092be15-424d-4917-a945-f6313ccaad94 ed4fa4041f4409a0b2460ffb76a2e5a9 {"aliquot_tag": "ALQ_30e19ec9", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.miRNA-Seq.T.hg38 C3L-02741 UCEC miRNA-Seq tumor CPT0188190010 9f28dbdd-a300-4ef8-ab40-68fc37732e45_mirnaseq_gdc_realn.bam 252812275 BAM harmonized CPTAC3 af96f1da-85c7-4b8b-b528-5346035f4c50 2e83fb8095eefb73b3b904ff8483a603 {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.chimeric.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.chimeric.gdc_realn.bam 29523375 BAM chimeric harmonized CPTAC3 7ee718d8-b1f7-45c3-8268-41a468947e0d c6899a40b02011ce7127c60d923a34a4 {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.chimeric.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.chimeric.gdc_realn.bam 213315749 BAM chimeric harmonized CPTAC3 f060a413-b9fa-4711-857a-2c10e68490ae eb9a78d8661bdbc8670c9673aae57070 {"aliquot_tag": "ALQ_91409bb8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.genomic.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.genomic.gdc_realn.bam 7273084969 BAM genomic harmonized CPTAC3 9d546ed1-c3d4-4849-9ab8-eb580364b7df 8d84638dbd14acca743b7439bcb350cf {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.genomic.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.genomic.gdc_realn.bam 11481403880 BAM genomic harmonized CPTAC3 b816c035-18d8-488a-86dd-8addbe39416d ba9098e2bbdac442adff64bf02555fa3 {"aliquot_tag": "ALQ_91409bb8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.S33_R1.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R1_001.fastq.gz 7289862853 FASTQ S33_R1 submitted_unaligned CPTAC3 fea63445-8062-4de8-b135-3bc8abb87038 7e580313070a291a3a6599ede9ea2a9f {"aliquot_tag": "ALQ_91409bb8", "sample": "S33", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.S33_R2.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R2_001.fastq.gz 7675178438 FASTQ S33_R2 submitted_unaligned CPTAC3 2a0d4a66-5975-440b-97bf-4fb195a27398 cc2f0c8dacce68033780641558050a05 {"aliquot_tag": "ALQ_91409bb8", "sample": "S33", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.S34_L005_R1.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R1_001.fastq.gz 3407301989 FASTQ S34_L005_R1 submitted_unaligned CPTAC3 8b6df366-157d-44c2-ac01-ce3f4dfc59ce c7f1b8511a2cf604e3e373b9b8b936e6 {"aliquot_tag": "ALQ_30e19ec9", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.S34_L005_R2.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R2_001.fastq.gz 3972708041 FASTQ S34_L005_R2 submitted_unaligned CPTAC3 a7be553d-7271-4bc6-a69b-e3895f8d5429 9289a4ebe0f2a0fd631e961ae6a65bdc {"aliquot_tag": "ALQ_30e19ec9", "sample": "S34", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.transcriptome.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.transcriptome.gdc_realn.bam 9740494405 BAM transcriptome harmonized CPTAC3 cacd4563-c7c2-4281-9a4d-adffe6f73776 3de9af634a19a4d96a558c6a31df75cd {"aliquot_tag": "ALQ_30e19ec9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.RNA-Seq.transcriptome.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.transcriptome.gdc_realn.bam 7345399590 BAM transcriptome harmonized CPTAC3 b81a4a21-f077-41c7-ba62-0c856ee892b8 8c603c081f55f3d7cb8ed187b096e853 {"aliquot_tag": "ALQ_91409bb8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.WGS.N C3L-02741 UCEC WGS blood_normal CPT0183110002 CPT0183110002.WholeGenome.RP-1303.bam 76225307001 BAM submitted_aligned CPTAC3 1efe2de1-d220-4bf0-beda-1842241c9976 dd5d51c215144cb39a8c767a5cd9d2f6 {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02741.WGS.N.hg38 C3L-02741 UCEC WGS blood_normal CPT0183110002 96b9e5f8-e9be-4538-9034-958d5afb4cdf_wgs_gdc_realn.bam 109810096415 BAM harmonized CPTAC3 dfbb4a41-0997-4e29-bee9-d16b65319f8e c9b354c0eaaba1b88c27361338826931 {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02741.WGS.T C3L-02741 UCEC WGS tumor CPT0188190007 CPT0188190007.WholeGenome.RP-1303.bam 62435661938 BAM submitted_aligned CPTAC3 5af840eb-f364-4dd8-9dc5-e2157d27e359 ea33154c6e8fd1cd414a79e78fab5516 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.WGS.T.hg38 C3L-02741 UCEC WGS tumor CPT0188190007 d2d45122-887e-473b-baa2-dc47abb5d7b5_wgs_gdc_realn.bam 92963824718 BAM harmonized CPTAC3 fed4c41c-633f-40d3-9a37-05240e2e8ef5 723a6a3cf6d20cbc44dd185d85a49180 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.WXS.N C3L-02741 UCEC WXS blood_normal CPT0183110002 CPT0183110002.WholeExome.RP-1303.bam 18212719238 BAM submitted_aligned CPTAC3 e2165089-1ad2-4021-bdff-6516a1d0d579 0cc6b32d6b2ffd3992f8239ffb17d91e {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02741.WXS.N.hg38 C3L-02741 UCEC WXS blood_normal CPT0183110002 96b9e5f8-e9be-4538-9034-958d5afb4cdf_wxs_gdc_realn.bam 25148838017 BAM harmonized CPTAC3 2e2d6d89-ce4a-48ee-bc2e-200f34a54973 d4cd5979f6b85a95e3a4a4960839c584 {"aliquot_tag": "ALQ_f583d19f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02741.WXS.T C3L-02741 UCEC WXS tumor CPT0188190007 CPT0188190007.WholeExome.RP-1303.bam 30704369940 BAM submitted_aligned CPTAC3 3114bf40-03c2-4d07-b770-b7c17fba2f72 43c9386ce8856da289c5cf422656d9da {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02741.WXS.T.hg38 C3L-02741 UCEC WXS tumor CPT0188190007 d2d45122-887e-473b-baa2-dc47abb5d7b5_wxs_gdc_realn.bam 42949995592 BAM harmonized CPTAC3 5dea83cc-58d1-4b29-9327-b9bee94a919e e24df97afe336c3576cc7df6df8b6525 {"aliquot_tag": "ALQ_b79e3a2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.MethArray.Green.T C3L-02744 UCEC Methylation_Array tumor CPT0188370006 203561620153_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 dc9f5a35-ef11-4cc8-a316-50acd190c162 0cd77582c741c19b66dae608b5b66efe {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.MethArray.Red.T C3L-02744 UCEC Methylation_Array tumor CPT0188370006 203561620153_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6d538141-8982-4b5c-95d8-be6f87b135e4 c369ef3a45831e7866bb4dd16e3e7c3e {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.miRNA-Seq.S171_L008_R1.T C3L-02744 UCEC miRNA-Seq tumor CPT0188370009 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTTCC_S171_L008_R1_001.unaln.bam 205074391 BAM S171_L008_R1 submitted_unaligned CPTAC3 c461f89e-644e-4ae4-8c7a-15eeec91eb50 61706947269e71eb2007cc6a8dc9474d {"aliquot_tag": "ALQ_a2de0846", "sample": "S171", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.miRNA-Seq.T.hg38 C3L-02744 UCEC miRNA-Seq tumor CPT0188370009 4c8ae1fe-2866-4610-961b-61010b380e04_mirnaseq_gdc_realn.bam 228967805 BAM harmonized CPTAC3 344ef38f-b6d8-4144-a2f3-64c0bc4370a5 1e5965238e3bc757273b46515b2af0d8 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.chimeric.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.chimeric.gdc_realn.bam 285970366 BAM chimeric harmonized CPTAC3 098d3de3-c649-4f76-9a23-050664622e0c d2cabddfbc21d85ffb9aed1be90a56f8 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.chimeric.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.chimeric.gdc_realn.bam 560174952 BAM chimeric harmonized CPTAC3 59b9fc95-c654-4223-90fa-7d11a1c4455a 39edb9806cfe6b651da146812c0111ca {"aliquot_tag": "ALQ_64c03d78", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.genomic.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.genomic.gdc_realn.bam 7949785699 BAM genomic harmonized CPTAC3 a973b9ac-15fe-4e62-a9b8-2feb18d61574 c24e963f8c8e0547f8b9d40f1c7f5c51 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.genomic.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.genomic.gdc_realn.bam 25442290919 BAM genomic harmonized CPTAC3 7e13d88d-603d-49fe-a135-25a4216595da b1f6da7dbf0623d3340c9a849162d449 {"aliquot_tag": "ALQ_64c03d78", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.S22_L006_R1.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R1_001.fastq.gz 3092692456 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 31af8f62-4e41-44be-be45-2fad56f86ba9 b0a00f4ba392f69b20ea934462aae7a5 {"aliquot_tag": "ALQ_a2de0846", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.S22_L006_R2.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R2_001.fastq.gz 3162279933 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 1adfd980-889e-4035-b2ef-c072f11c5127 bb983d9bcc04261d01dfe94ec9460918 {"aliquot_tag": "ALQ_a2de0846", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.S68_R1.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R1_001.fastq.gz 16112707998 FASTQ S68_R1 submitted_unaligned CPTAC3 f5742c28-83bc-4fe0-82bf-4b90b9550cb0 78d40828a5bd1c5ba9b93f9ac68d6b79 {"aliquot_tag": "ALQ_64c03d78", "sample": "S68", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.S68_R2.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R2_001.fastq.gz 16564949198 FASTQ S68_R2 submitted_unaligned CPTAC3 e4b97fe5-5b5a-403c-8710-e7c2ebdac55d 99942fe17899337c3fb1f63523aced99 {"aliquot_tag": "ALQ_64c03d78", "sample": "S68", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.transcriptome.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.transcriptome.gdc_realn.bam 5995278336 BAM transcriptome harmonized CPTAC3 b20bac08-9940-4163-9645-13adecf7e2e9 1cf25337d32317364013941ddbaca9c1 {"aliquot_tag": "ALQ_a2de0846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.RNA-Seq.transcriptome.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.transcriptome.gdc_realn.bam 17548626833 BAM transcriptome harmonized CPTAC3 2f3b103d-0cf0-499c-a8f3-bf0565618424 95df804807d2f7fa7e2aebe562aada06 {"aliquot_tag": "ALQ_64c03d78", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.WGS.N C3L-02744 UCEC WGS blood_normal CPT0183150002 CPT0183150002.WholeGenome.RP-1303.bam 72024140799 BAM submitted_aligned CPTAC3 84c6d232-b96d-41de-9a9a-df3f77aba50f 8d489160d5472e89a90af32b50c41fc0 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02744.WGS.N.hg38 C3L-02744 UCEC WGS blood_normal CPT0183150002 70b87a14-c5ca-4d59-b9cc-1ef4034dc2bf_wgs_gdc_realn.bam 105233001134 BAM harmonized CPTAC3 7d94c451-3960-4452-8ed9-07819a66b5cc 21b639c833d42e248b0a5f6922f1f1a2 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02744.WGS.T C3L-02744 UCEC WGS tumor CPT0188370006 CPT0188370006.WholeGenome.RP-1303.bam 85146710241 BAM submitted_aligned CPTAC3 b09baca7-b177-45c3-90c0-bb8d80839cd1 d354d62ebad7ef1eb769d5eaa3f13c2b {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.WGS.T.hg38 C3L-02744 UCEC WGS tumor CPT0188370006 9236b3c7-aee7-4c4b-9ff4-e2d51eea0daa_wgs_gdc_realn.bam 123381243114 BAM harmonized CPTAC3 aa50351c-e5f7-416e-a509-6f8e53bfc85f 56f3034ee0625c24d7dcc9896814d79f {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.WXS.N C3L-02744 UCEC WXS blood_normal CPT0183150002 CPT0183150002.WholeExome.RP-1303.bam 31366503602 BAM submitted_aligned CPTAC3 4bc8f690-caa0-40c7-aadb-4294408f3c47 472eec1da883fba7fc04ea619da112f7 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02744.WXS.N.hg38 C3L-02744 UCEC WXS blood_normal CPT0183150002 70b87a14-c5ca-4d59-b9cc-1ef4034dc2bf_wxs_gdc_realn.bam 42978855470 BAM harmonized CPTAC3 3917d081-1f26-4efa-aeca-c84aad552931 fa3ebcf872f8fcec654fcd59e424ba17 {"aliquot_tag": "ALQ_3775f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02744.WXS.T C3L-02744 UCEC WXS tumor CPT0188370006 CPT0188370006.WholeExome.RP-1303.bam 34689260392 BAM submitted_aligned CPTAC3 d41b2d64-342d-4104-890e-0e1233ba7477 2678b8c2640a407e38137a6a5396fa50 {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02744.WXS.T.hg38 C3L-02744 UCEC WXS tumor CPT0188370006 9236b3c7-aee7-4c4b-9ff4-e2d51eea0daa_wxs_gdc_realn.bam 47445863841 BAM harmonized CPTAC3 0f74b825-7a91-4bd4-a469-46b2f30e57bc 9446a286619c31eebc3bb74dcb7a4897 {"aliquot_tag": "ALQ_326115d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.MethArray.Green.T C3L-02746 UCEC Methylation_Array tumor CPT0188270007 203561450084_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d2af6067-b975-4af2-afa2-a438e6769be3 c0a2a6856e9748f09ed94535ca21939b {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.MethArray.Red.T C3L-02746 UCEC Methylation_Array tumor CPT0188270007 203561450084_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 b4414504-caef-41f4-b697-e1ff2e2d7f4d 8b5ad472d4f82f506b1a6439491b7858 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.miRNA-Seq.S17_L003_R1.T C3L-02746 UCEC miRNA-Seq tumor CPT0188270010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 162413020 BAM S17_L003_R1 submitted_unaligned CPTAC3 d3186121-2c90-4324-86a6-b74722165323 d2e69aa136c14f6299269ec977ddfabd {"aliquot_tag": "ALQ_9455206", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.miRNA-Seq.T.hg38 C3L-02746 UCEC miRNA-Seq tumor CPT0188270010 f0a79064-c834-4444-a7f5-aefa169e1d1e_mirnaseq_gdc_realn.bam 182383310 BAM harmonized CPTAC3 c0418d48-fb0f-4f46-83eb-2304bd804373 a9e7e920e8edff83dd9d44c084961e0f {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.chimeric.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.chimeric.gdc_realn.bam 53945773 BAM chimeric harmonized CPTAC3 22389747-ba18-4af7-94ca-b8f63fd16a0c db33a1702f8a11dc7ae92c7a49047f59 {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.chimeric.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.chimeric.gdc_realn.bam 223539657 BAM chimeric harmonized CPTAC3 1e3fdd48-fabb-4f36-b2c3-10f6717a962a 2b2484dd17ad0b72deb92c1b536f0754 {"aliquot_tag": "ALQ_677c61ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.genomic.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.genomic.gdc_realn.bam 11251199938 BAM genomic harmonized CPTAC3 32f4436b-06a9-43f9-b06f-07228017e7b1 7ff2259d2334754d221f6fbcb185cf8d {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.genomic.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.genomic.gdc_realn.bam 11073087979 BAM genomic harmonized CPTAC3 35c8a2b1-06f3-4822-8f11-4d6580dbc8a5 afaeedc628880bee338b5abdb0633d5f {"aliquot_tag": "ALQ_677c61ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.S23_L006_R1.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R1_001.fastq.gz 5591113902 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 1a05a9f1-2da4-4d3a-b21c-2a1d06004c87 ee65a98cd2c8ce61fce3595c04889531 {"aliquot_tag": "ALQ_9455206", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.S23_L006_R2.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R2_001.fastq.gz 6294101184 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 548e3dc3-22cf-4cf2-86d9-f0d14680ca4a 969bc79dd104d582f7631be23b886bc6 {"aliquot_tag": "ALQ_9455206", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.S91_R1.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R1_001.fastq.gz 7172855919 FASTQ S91_R1 submitted_unaligned CPTAC3 718534c6-57a1-4f75-bbd4-2e76a6958f36 45dbcdf8261643e84adf4aedc41b5c92 {"aliquot_tag": "ALQ_677c61ad", "sample": "S91", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.S91_R2.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R2_001.fastq.gz 7436698089 FASTQ S91_R2 submitted_unaligned CPTAC3 caca8140-9ce4-47f3-947d-f988c94218ff 60b50738e788e488ed7761bc8f82fe34 {"aliquot_tag": "ALQ_677c61ad", "sample": "S91", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.transcriptome.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.transcriptome.gdc_realn.bam 15373701340 BAM transcriptome harmonized CPTAC3 758fc5d2-f544-4923-950e-c9fda4174694 a1f4ecf19b7d4fc7d48cce7d95ef133a {"aliquot_tag": "ALQ_9455206", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.RNA-Seq.transcriptome.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.transcriptome.gdc_realn.bam 7031934207 BAM transcriptome harmonized CPTAC3 02fd8de2-6cc4-42cd-bcda-3b603b3b3f36 3b22221419fc19953b564673ee7cb895 {"aliquot_tag": "ALQ_677c61ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.WGS.N C3L-02746 UCEC WGS blood_normal CPT0183130002 CPT0183130002.WholeGenome.RP-1303.bam 84112668708 BAM submitted_aligned CPTAC3 210bb094-1a0c-4c84-9781-57d8f34c2e9d e503968c37c16be2f934b2985e614dea {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02746.WGS.N.hg38 C3L-02746 UCEC WGS blood_normal CPT0183130002 fa737772-42d4-4fb7-95ed-008187ef10a8_wgs_gdc_realn.bam 121451252317 BAM harmonized CPTAC3 4e1197b9-5d2f-41fe-8abe-e1592b3398ab a8c6063606976fd0f1adf598f1055be8 {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02746.WGS.T C3L-02746 UCEC WGS tumor CPT0188270007 CPT0188270007.WholeGenome.RP-1303.bam 70182947819 BAM submitted_aligned CPTAC3 43c5e9d5-c037-48e2-a7d7-673cf3c3d195 61f03481c49d2c4fbb0617ef3e7ab745 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.WGS.T.hg38 C3L-02746 UCEC WGS tumor CPT0188270007 84bfcb2e-ac14-4ca3-94f6-e8215b2cbfa4_wgs_gdc_realn.bam 105440803308 BAM harmonized CPTAC3 e7566e72-28b9-47b1-8fbc-2840d7674c34 88c58f95669413d0ee002e4a49d5d24e {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.WXS.N C3L-02746 UCEC WXS blood_normal CPT0183130002 CPT0183130002.WholeExome.RP-1303.bam 31779524585 BAM submitted_aligned CPTAC3 0d09b299-8293-4290-b1c0-f0415a5d98e9 1564cb6c5fd36fa6b8dafaef08124b20 {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02746.WXS.N.hg38 C3L-02746 UCEC WXS blood_normal CPT0183130002 fa737772-42d4-4fb7-95ed-008187ef10a8_wxs_gdc_realn.bam 44278366601 BAM harmonized CPTAC3 9b546bc5-8a2b-468d-a871-b7ba28c7f33e aa14484ac34e4d9b291fcb07e7ee8c63 {"aliquot_tag": "ALQ_8f4382ff", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02746.WXS.T C3L-02746 UCEC WXS tumor CPT0188270007 CPT0188270007.WholeExome.RP-1303.bam 21422265319 BAM submitted_aligned CPTAC3 ee1bf528-fea1-4142-936a-19974fb14d39 d28bedf3daf1ff641b6bee44cc2c0131 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02746.WXS.T.hg38 C3L-02746 UCEC WXS tumor CPT0188270007 84bfcb2e-ac14-4ca3-94f6-e8215b2cbfa4_wxs_gdc_realn.bam 29485937209 BAM harmonized CPTAC3 5cc0dbfc-1ca5-4bc9-a2ad-ab5e9be09fde ebe9c7d49e313d7757d060d89b8896b8 {"aliquot_tag": "ALQ_8e3af6e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.MethArray.Green.T C3L-02747 UCEC Methylation_Array tumor CPT0188480007 203561620012_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a5ca41d3-ba74-4ea6-8348-1e00bcfc1ead 3254bfe12c929b8c6a9881ae8ba071b7 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.MethArray.Red.T C3L-02747 UCEC Methylation_Array tumor CPT0188480007 203561620012_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6b8b3d3e-cbe7-4a8a-b7cb-b725ed6bf9f9 d5cb2381a41595c9960e0d2560f202ee {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.miRNA-Seq.S18_L003_R1.T C3L-02747 UCEC miRNA-Seq tumor CPT0188480010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 270670384 BAM S18_L003_R1 submitted_unaligned CPTAC3 1dbb6198-f082-4b0b-afb7-047098299025 7e3bf3c8df1cd87d7143ff88e3be1734 {"aliquot_tag": "ALQ_5d4c26ca", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.miRNA-Seq.T.hg38 C3L-02747 UCEC miRNA-Seq tumor CPT0188480010 6db032da-bfa4-4470-94de-67291b215048_mirnaseq_gdc_realn.bam 302749315 BAM harmonized CPTAC3 440b3726-8c93-48cc-863c-29805e625045 b9cbc7c7d90d43063ac07ec79f3d8318 {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.chimeric.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.chimeric.gdc_realn.bam 42571889 BAM chimeric harmonized CPTAC3 1ea7bc1f-a3e8-454f-b4b0-cd148e7cb971 2a98c0014714d4f32fab7429beba20a5 {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.chimeric.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.chimeric.gdc_realn.bam 196734723 BAM chimeric harmonized CPTAC3 dfa8410c-2597-46ae-bbc9-44812419f35d 80b5427886e69111c5ff64e48db86412 {"aliquot_tag": "ALQ_e83c940d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.genomic.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.genomic.gdc_realn.bam 8437102035 BAM genomic harmonized CPTAC3 04fbce54-4b69-48a1-8b3a-82f20169e53d da6923fb819d60a78660b63ec1f7f6af {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.genomic.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.genomic.gdc_realn.bam 10145836482 BAM genomic harmonized CPTAC3 fa62e697-c8c6-4cdd-b9ad-1a81210a74cc 0a09d1425557fcf6b3fa0b7f38c4d7e7 {"aliquot_tag": "ALQ_e83c940d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.S22_L006_R1.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R1_001.fastq.gz 3888266390 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 3cb651e1-c2a2-4f7d-bcbc-348c255b49ed 4f1ec37bc5e49adb0d48b80a45f1a5f5 {"aliquot_tag": "ALQ_5d4c26ca", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.S22_L006_R2.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R2_001.fastq.gz 4526930489 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 134b54a4-abe8-48db-ac37-8c8d30ace986 92d17525c013668e1e8d48e2b9c3ba7d {"aliquot_tag": "ALQ_5d4c26ca", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.S75_R1.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R1_001.fastq.gz 5437415111 FASTQ S75_R1 submitted_unaligned CPTAC3 81138028-4130-4cf4-ac27-bf36e3e83039 2361608470dbbce13e38c4248bf66977 {"aliquot_tag": "ALQ_e83c940d", "sample": "S75", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.S75_R2.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R2_001.fastq.gz 5531099316 FASTQ S75_R2 submitted_unaligned CPTAC3 56276d60-2394-48ff-a438-318c70060ca5 7a2600c542c621589ad4cfc91c8ab263 {"aliquot_tag": "ALQ_e83c940d", "sample": "S75", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.transcriptome.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.transcriptome.gdc_realn.bam 10346980095 BAM transcriptome harmonized CPTAC3 f24e4862-a539-456f-83e2-b255d1d983cc 1a560634f33dda3cc7e393c65a067bd2 {"aliquot_tag": "ALQ_5d4c26ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.RNA-Seq.transcriptome.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.transcriptome.gdc_realn.bam 6144280229 BAM transcriptome harmonized CPTAC3 0e7407e5-478d-440b-9875-11515f5ccca3 5c1770402d6cf20052432e185ff2f93a {"aliquot_tag": "ALQ_e83c940d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.WGS.N C3L-02747 UCEC WGS blood_normal CPT0183170002 CPT0183170002.WholeGenome.RP-1303.bam 57478028720 BAM submitted_aligned CPTAC3 fc85e981-c23a-4956-97bc-d80e53e3ee5b ae3ea5d8d517eebf1e846e8e06d60c05 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02747.WGS.N.hg38 C3L-02747 UCEC WGS blood_normal CPT0183170002 9b229a65-285d-4818-9b93-380fc9891fbb_wgs_gdc_realn.bam 83974110633 BAM harmonized CPTAC3 ca6433d5-5901-4360-a0cc-be3613506b88 ead078fcc42616a8e420ae865e895426 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02747.WGS.T C3L-02747 UCEC WGS tumor CPT0188480007 CPT0188480007.WholeGenome.RP-1303.bam 81248685669 BAM submitted_aligned CPTAC3 4effdb2d-6695-4885-ab95-e4ad787b363e 2280791d9b41749d60a04b04c2b8c0b0 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.WGS.T.hg38 C3L-02747 UCEC WGS tumor CPT0188480007 d698845e-1220-41d8-bf5d-7363a5df2d14_wgs_gdc_realn.bam 117784944412 BAM harmonized CPTAC3 1894bbde-fb66-4ab5-9676-95a28fb8225b 782f76bb6685d2b5e6c2f07a50815197 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.WXS.N C3L-02747 UCEC WXS blood_normal CPT0183170002 CPT0183170002.WholeExome.RP-1303.bam 25147522172 BAM submitted_aligned CPTAC3 4cadbbf0-a771-4045-9f24-ab727fe2f91e 6db07ac00c0389cdb55302ede3aeb255 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02747.WXS.N.hg38 C3L-02747 UCEC WXS blood_normal CPT0183170002 9b229a65-285d-4818-9b93-380fc9891fbb_wxs_gdc_realn.bam 34183771830 BAM harmonized CPTAC3 a45c7228-e30a-47b0-a158-a95993f62abd d6753e55bc518ca54e9b225677a718f2 {"aliquot_tag": "ALQ_7ac3243f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02747.WXS.T C3L-02747 UCEC WXS tumor CPT0188480007 CPT0188480007.WholeExome.RP-1303.bam 23143178993 BAM submitted_aligned CPTAC3 8bfdcdad-21be-4fd2-b769-0d2f511f2e87 3689d034352e023cf9d80ce4f9a13c70 {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02747.WXS.T.hg38 C3L-02747 UCEC WXS tumor CPT0188480007 d698845e-1220-41d8-bf5d-7363a5df2d14_wxs_gdc_realn.bam 32406282251 BAM harmonized CPTAC3 30713f87-3cc5-43c7-b2e0-18165e94110f b2078e4ee9e738ab3532869aa753b78c {"aliquot_tag": "ALQ_da338228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02779.MethArray.Green.Tpb C3L-02779 AML Methylation_Array tumor_peripheral_blood CPT0414580002 205987780161_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a6b52a94-487c-47b7-9b19-b218b811654f e85233312dee3b9f0a517c42292bb709 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.MethArray.Red.Tpb C3L-02779 AML Methylation_Array tumor_peripheral_blood CPT0414580002 205987780161_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 52556bea-9e87-40b8-8f55-c3a0aed9ec05 869fedfc50cc7441661ac71c2a2b8167 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.miRNA-Seq.S12_L003_R1.Tpb C3L-02779 AML miRNA-Seq tumor_peripheral_blood CPT0414600001 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L003_R1_001.unaln.bam 243275360 BAM S12_L003_R1 submitted_unaligned CPTAC3 94e4c3db-4ac5-4d7c-9fe2-9f9dc8a9e224 fb691c430ba63db16ae0ea2d747449d7 {"aliquot_tag": "ALQ_dc90f9c7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.miRNA-Seq.Tpb.hg38 C3L-02779 AML miRNA-Seq tumor_peripheral_blood CPT0414600001 b1537e34-cb2d-4c8d-ae30-d6bffa344894_mirnaseq_gdc_realn.bam 274968207 BAM harmonized CPTAC3 6c0dbad0-1e0e-4f45-a764-db5a35506cca 2ea8672600b6907a6c3c3b3de6aa8933 {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.RNA-Seq.chimeric.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.chimeric.gdc_realn.bam 538570659 BAM chimeric harmonized CPTAC3 d81b83da-9f1b-4a49-8c56-5bbade78add8 49571d09412ddb66579003c94741fc42 {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.RNA-Seq.genomic.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.genomic.gdc_realn.bam 8311113266 BAM genomic harmonized CPTAC3 25b19379-cafc-4e2c-8c34-36569a456c16 58bff88a6370685150954bc9ec5d2670 {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.RNA-Seq.S8_L002_R1.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4043417939 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 9d599c99-8756-426d-a6df-9620e51431fa 73636c741ebc04b9e8b60ddde8b9719a {"aliquot_tag": "ALQ_dc90f9c7", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.RNA-Seq.S8_L002_R2.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 4516145295 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 0a70c3b2-77d6-409d-82cf-1f729b1c3f15 1e3bf10f27664efe7f5e97c098fa63fb {"aliquot_tag": "ALQ_dc90f9c7", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.RNA-Seq.transcriptome.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.transcriptome.gdc_realn.bam 7955888806 BAM transcriptome harmonized CPTAC3 8135f300-7a6a-4226-80d1-5772663f8b35 13ef3ae37549bf0cb4cf64c972ab6a0b {"aliquot_tag": "ALQ_dc90f9c7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.WGS.Nbc C3L-02779 AML WGS buccal_normal CPT0414560001 CPT0414560001.WholeGenome.RP-2158.bam 51106807073 BAM submitted_aligned CPTAC3 bde00534-14de-4f41-a5da-254de28cccc9 10694725d3fad760f8ab20d7685902c1 {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02779.WGS.Nbc.hg38 C3L-02779 AML WGS buccal_normal CPT0414560001 dad5716d-fddd-4631-806b-9163381abba9_wgs_gdc_realn.bam 154929092591 BAM harmonized CPTAC3 15c037cc-7c13-4563-aebd-cf963b3cb3e8 ce2715530e35895a79269a3e4d9b9037 {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02779.WGS.Tpb C3L-02779 AML WGS tumor_peripheral_blood CPT0414580002 CPT0414580002.WholeGenome.RP-2158.bam 55163205149 BAM submitted_aligned CPTAC3 e3b10ca1-4fb9-4398-a789-2fe0443c1b5f d2e315473865cd6a534454c0fb3941f9 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.WGS.Tpb.hg38 C3L-02779 AML WGS tumor_peripheral_blood CPT0414580002 821248bb-5679-49bd-ad37-14d52192cecf_wgs_gdc_realn.bam 165956927260 BAM harmonized CPTAC3 9e27196b-be7e-4e2e-8aa6-7b75b02bda7e 8d35f9d8779cbb9a928e0f1e262ba04c {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.WXS.Nbc C3L-02779 AML WXS buccal_normal CPT0414560001 CPT0414560001.WholeExome.RP-1303.bam 26995372670 BAM submitted_aligned CPTAC3 e8e09b24-a305-48b8-836a-4c7f6e683357 21175e68a3f5f22ef85f6eda1a06354c {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-02779.WXS.Nbc.hg38 C3L-02779 AML WXS buccal_normal CPT0414560001 dad5716d-fddd-4631-806b-9163381abba9_wxs_gdc_realn.bam 37612139490 BAM harmonized CPTAC3 adf548df-165a-4d62-8dbc-e520d78a169d 802e17c328b527b5d2e48d3cfde00d63 {"aliquot_tag": "ALQ_d5447ec9", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-02779.WXS.Tpb C3L-02779 AML WXS tumor_peripheral_blood CPT0414580002 CPT0414580002.WholeExome.RP-1303.bam 22631885864 BAM submitted_aligned CPTAC3 de5489ea-90a5-473f-a60e-902dd94a947c c9bbee886a27e9d838ce29a89ba61245 {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-02779.WXS.Tpb.hg38 C3L-02779 AML WXS tumor_peripheral_blood CPT0414580002 821248bb-5679-49bd-ad37-14d52192cecf_wxs_gdc_realn.bam 31291655214 BAM harmonized CPTAC3 16e82297-fe5b-4c67-96a2-f94850796941 745d182fed4c57353bb039c095ad7d5b {"aliquot_tag": "ALQ_f37d9112", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-02800.MethArray.Green.T C3L-02800 UCEC Methylation_Array tumor CPT0186900011 203561620132_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 36a4caa9-ad39-418a-895b-90a6a62aee3a 265912c2b390652de69b3f95a1251c50 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.MethArray.Red.T C3L-02800 UCEC Methylation_Array tumor CPT0186900011 203561620132_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 dc32943f-007e-4f4e-ac79-5d931a21ee55 14978eafed3ff3238c7e2df9f7888be4 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.miRNA-Seq.S10_L003_R1.T C3L-02800 UCEC miRNA-Seq tumor CPT0186900014 190508_UNC31-K00269_0215_BH7FYKBBXY_TAGCTT_S10_L003_R1_001.unaln.bam 160952979 BAM S10_L003_R1 submitted_unaligned CPTAC3 43c2f7df-b696-4f60-a299-e69d3b900eaa 787ec51b74423b4cd4f3a3b81edb82f4 {"aliquot_tag": "ALQ_86f0c191", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.miRNA-Seq.T.hg38 C3L-02800 UCEC miRNA-Seq tumor CPT0186900014 240ce257-3ffd-4c04-90e6-3acc81095712_mirnaseq_gdc_realn.bam 178746928 BAM harmonized CPTAC3 4033fddf-8012-421b-b450-d8239ce00c51 b1df2576414d91d08c7a50ff85d750c4 {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.RNA-Seq.chimeric.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.chimeric.gdc_realn.bam 39257718 BAM chimeric harmonized CPTAC3 abf2c1b6-546c-4b3c-8423-ca4d4a884dad bf81f55f973d59db86a8056a22d966cf {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.RNA-Seq.genomic.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.genomic.gdc_realn.bam 9349924123 BAM genomic harmonized CPTAC3 d5be1158-7d0d-4cd7-acd5-d16a56530b9c cf9ec77bbf3cd39fa9d3093c3a1b115e {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.RNA-Seq.S30_L008_R1.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R1_001.fastq.gz 4508868945 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 74796345-0996-44be-aa00-56c8b0a1a1ac 77e0c91c86d620b499fb80f88f47bed0 {"aliquot_tag": "ALQ_86f0c191", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.RNA-Seq.S30_L008_R2.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R2_001.fastq.gz 5069170985 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 923374c5-05a8-454f-ab87-2f06fb05351b 1281e30a172e916984cd238924cd6d12 {"aliquot_tag": "ALQ_86f0c191", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.RNA-Seq.transcriptome.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.transcriptome.gdc_realn.bam 11243313052 BAM transcriptome harmonized CPTAC3 61373585-171d-4f9e-8f1c-d64eb3a1201c 9b7b5e69baf45ff012a079a0398401f4 {"aliquot_tag": "ALQ_86f0c191", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.WGS.N C3L-02800 UCEC WGS blood_normal CPT0186930002 CPT0186930002.WholeGenome.RP-1303.bam 76994663609 BAM submitted_aligned CPTAC3 8403d25d-aee7-4997-ac02-d60dd863a866 842f42332ec479dd69f88b194e174e4c {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02800.WGS.N.hg38 C3L-02800 UCEC WGS blood_normal CPT0186930002 abea41ce-f548-4b59-94df-c25ea1a3d80b_wgs_gdc_realn.bam 111088746017 BAM harmonized CPTAC3 0f97e2fd-22e2-4ae6-9129-26647af4cb04 7e0fe5d6274ce6da94d049838f5fa916 {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02800.WGS.T C3L-02800 UCEC WGS tumor CPT0186900011 CPT0186900011.WholeGenome.RP-1303.bam 67360853598 BAM submitted_aligned CPTAC3 dba5cee9-0c6a-4332-92c7-47511d01e3fc 510332158df764f1a8ab91281e5aefba {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.WGS.T.hg38 C3L-02800 UCEC WGS tumor CPT0186900011 aeb5e654-0b85-4347-a109-e0312b7778a4_wgs_gdc_realn.bam 100283907964 BAM harmonized CPTAC3 3017d721-58f9-4818-b2cc-4a25a5869caa a5849dc3ffb96d65b92ba1309fc574a0 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.WXS.N C3L-02800 UCEC WXS blood_normal CPT0186930002 CPT0186930002.WholeExome.RP-1303.bam 22166772827 BAM submitted_aligned CPTAC3 e02dcd03-be34-45d7-95c3-40379172cccd 6adfa31ef361dfe28d6ea0c12fb37c7e {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02800.WXS.N.hg38 C3L-02800 UCEC WXS blood_normal CPT0186930002 abea41ce-f548-4b59-94df-c25ea1a3d80b_wxs_gdc_realn.bam 30498507591 BAM harmonized CPTAC3 d811b0c8-e883-4156-99fd-3a06f8794068 24027d1b2f4a33ad951cda7e5b6c7296 {"aliquot_tag": "ALQ_31282f35", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02800.WXS.T C3L-02800 UCEC WXS tumor CPT0186900011 CPT0186900011.WholeExome.RP-1303.bam 17537496250 BAM submitted_aligned CPTAC3 b41aec9d-cb55-4a10-9887-6dc24d66275d e050b58798a0bc7307042918992f9516 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02800.WXS.T.hg38 C3L-02800 UCEC WXS tumor CPT0186900011 aeb5e654-0b85-4347-a109-e0312b7778a4_wxs_gdc_realn.bam 24766170268 BAM harmonized CPTAC3 ad42449e-3474-49f9-ae0c-31e10778016f e2ac28b3299753946b786c67e90e1108 {"aliquot_tag": "ALQ_f69a351e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.DUP_2919687e.WGS.T C3L-02802 UCEC WGS tumor CPT0174890011_1 CPT0174890011_1.WholeGenome.RP-1303.bam 61753133166 BAM submitted_aligned CPTAC3 8813404d-81e6-4a76-8b2e-5f96182564d7 3599b035206bc3e7de2b81174e012283 {"aliquot_tag": "DUP_2919687e", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.DUP_2919687e.WGS.T.hg38 C3L-02802 UCEC WGS tumor CPT0174890011_1 77405ed9-5f5c-4671-bc9a-3ac348e17d81_wgs_gdc_realn.bam 90492676749 BAM harmonized CPTAC3 f488ffbb-175a-4f0d-82b1-dbe7eaa933bb 4d6a97177edea267ba2d4b3ea3a2a9bc {"aliquot_tag": "DUP_2919687e", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.MethArray.Green.T C3L-02802 UCEC Methylation_Array tumor CPT0174890011 203561620016_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 52468aaa-59af-40e6-8bbb-894e2fbb2718 50be4dcf3bf8ef56aee6689327e779dd {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.MethArray.Red.T C3L-02802 UCEC Methylation_Array tumor CPT0174890011 203561620016_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 46220e8f-43ef-4b3a-9a42-82f2ecf89436 8e87c65d76797cc6e6bcaf5518e58165 {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.miRNA-Seq.S15_L003_R1.T C3L-02802 UCEC miRNA-Seq tumor CPT0174890014 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGTCA_S15_L003_R1_001.unaln.bam 283399994 BAM S15_L003_R1 submitted_unaligned CPTAC3 9f8995f2-bdf6-4cc0-b8ea-22e7f4722528 cb092b98a6b53a2f42973e8faa4e3e78 {"aliquot_tag": "ALQ_e0373c0", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.miRNA-Seq.T.hg38 C3L-02802 UCEC miRNA-Seq tumor CPT0174890014 d04ea83e-8873-4424-915d-a796ae15b228_mirnaseq_gdc_realn.bam 316165756 BAM harmonized CPTAC3 7b7a2d54-35f2-4169-a889-55d39b4e5789 191731fa630e9062d363bc535e19132e {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.chimeric.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.chimeric.gdc_realn.bam 38082988 BAM chimeric harmonized CPTAC3 f33ebf20-36ab-4ada-8087-c9ebc5109283 3eb92e6fd0136fb5e1be1979b444b488 {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.chimeric.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.chimeric.gdc_realn.bam 212784333 BAM chimeric harmonized CPTAC3 d57ffb73-14e2-4698-9b49-5eae188fd0e4 923388a00ad1643cd511f3496e1f9d89 {"aliquot_tag": "ALQ_dbfe54ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.genomic.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.genomic.gdc_realn.bam 8867478957 BAM genomic harmonized CPTAC3 748b8279-7c87-4599-a526-fc0a2c51babd f8b316c38b33077e2f1a7d63509ff3d2 {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.genomic.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.genomic.gdc_realn.bam 9830096020 BAM genomic harmonized CPTAC3 e15aa588-2690-48d5-9f90-aa832f81a0d4 986d9619869d1d73885dc4afbcf68c5a {"aliquot_tag": "ALQ_dbfe54ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.S27_L007_R1.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R1_001.fastq.gz 4130266603 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 2e2de8aa-2ee9-4900-bb8f-a617e3a161dc a902b6b6b9357675c404dd8a96939c57 {"aliquot_tag": "ALQ_e0373c0", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.S27_L007_R2.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R2_001.fastq.gz 4774861744 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 ecf64c63-45b2-4d74-a4c6-04042fa0c697 968a2eff76682875223f893aa1798a7a {"aliquot_tag": "ALQ_e0373c0", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.S90_R1.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R1_001.fastq.gz 6331741084 FASTQ S90_R1 submitted_unaligned CPTAC3 2919c92e-46ae-471b-8662-1e786b95dc8a 3b88775d3c3625a0332819e70bd085b8 {"aliquot_tag": "ALQ_dbfe54ba", "sample": "S90", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.S90_R2.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R2_001.fastq.gz 6509016362 FASTQ S90_R2 submitted_unaligned CPTAC3 06e16c82-9218-434d-8e82-3af32f30c2aa 2ed9eb53871965b6aa459da30c8df9b6 {"aliquot_tag": "ALQ_dbfe54ba", "sample": "S90", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.transcriptome.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.transcriptome.gdc_realn.bam 10083283549 BAM transcriptome harmonized CPTAC3 54f035be-ae8c-4669-ab0a-e3b70d8180d8 49f99206f85187c0803444bd8383a501 {"aliquot_tag": "ALQ_e0373c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.RNA-Seq.transcriptome.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.transcriptome.gdc_realn.bam 4714027512 BAM transcriptome harmonized CPTAC3 2a6fd9da-27e1-422d-bce0-e3190190a541 b3b2a3b07df5b60fffa2f422b12eaedb {"aliquot_tag": "ALQ_dbfe54ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.WGS.N C3L-02802 UCEC WGS blood_normal CPT0175510002 CPT0175510002.WholeGenome.RP-1303.bam 69215051337 BAM submitted_aligned CPTAC3 211e1e48-db95-4b28-9c05-6bb8b06e4906 dba5d5bd63b5c38e7c8ef2acb897a081 {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02802.WGS.N.hg38 C3L-02802 UCEC WGS blood_normal CPT0175510002 b9b8e517-9b96-4668-96cb-472c9816bfc8_wgs_gdc_realn.bam 101697758036 BAM harmonized CPTAC3 d614692d-045c-4bd8-8e70-7d28a11c9f4c fe5906267f0b252594a723923260f692 {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02802.WGS.T C3L-02802 UCEC WGS tumor CPT0174890011 CPT0174890011.WholeGenome.RP-1303.bam 18865620534 BAM submitted_aligned CPTAC3 0fac09db-2c4b-4895-9b6d-7c44b07d7f7f 0aaa0d0a4f58278e6bc7c46e1c53e238 {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.WGS.T.hg38 C3L-02802 UCEC WGS tumor CPT0174890011 0c89a20c-69f1-4162-9729-c75034dc27d0_wgs_gdc_realn.bam 26554254314 BAM harmonized CPTAC3 71666999-77aa-4e24-b4bc-1984c0c7b0b7 96244a31a931d5951805cf645eb1fa6d {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.WXS.N C3L-02802 UCEC WXS blood_normal CPT0175510002 CPT0175510002.WholeExome.RP-1303.bam 26443131102 BAM submitted_aligned CPTAC3 8d9b5461-3c4b-48ab-a964-1807c1662068 34d534e954f2f776fc7bac7fa502c59d {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02802.WXS.N.hg38 C3L-02802 UCEC WXS blood_normal CPT0175510002 b9b8e517-9b96-4668-96cb-472c9816bfc8_wxs_gdc_realn.bam 36608830087 BAM harmonized CPTAC3 9e7b3f3a-ca82-4ff9-a0c3-c77268d3e0bd 71c54fa3095f555f0aa6516ab5e4aa92 {"aliquot_tag": "ALQ_d4e2b41f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02802.WXS.T C3L-02802 UCEC WXS tumor CPT0174890011 CPT0174890011.WholeExome.RP-1303.bam 18865620611 BAM submitted_aligned CPTAC3 9f312395-419c-41b6-8075-c1386f95c6a4 e67f59133ac61bdbb223ba343f5afd7b {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02802.WXS.T.hg38 C3L-02802 UCEC WXS tumor CPT0174890011 0c89a20c-69f1-4162-9729-c75034dc27d0_wxs_gdc_realn.bam 26756936969 BAM harmonized CPTAC3 28427451-80b4-4744-bd0b-7038b448ac26 273e9b9b53a68359b3397c871b883bbd {"aliquot_tag": "ALQ_7e69874f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02809.MethArray.Green.T C3L-02809 PDA Methylation_Array tumor CPT0174700007 203561620064_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 1d501941-e7fd-4b8d-aaf5-e2211f1de4e6 30a237d70f62c7dbb1eb1249ad6e5928 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.MethArray.Red.T C3L-02809 PDA Methylation_Array tumor CPT0174700007 203561620064_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 63c5cde7-07ce-4fa9-8f36-72b696f5c500 f33eeacce34caf7704a634521dc2c638 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.miRNA-Seq.A.hg38 C3L-02809 PDA miRNA-Seq tissue_normal CPT0174800007 ef83cc65-3e3f-4092-a4fe-592f1a8c9948_mirnaseq_gdc_realn.bam 250523542 BAM harmonized CPTAC3 7365e5f0-a2af-4ad1-8e7a-08d074761d0a a61e7aaaa1bbf40a05d2bc3807a60728 {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02809.miRNA-Seq.S36_L002_R1.A C3L-02809 PDA miRNA-Seq tissue_normal CPT0174800007 190813_UNC32-K00270_0196_AH5MCWBBXY_CAGATC_S36_L002_R1_001.unaln.bam 215453078 BAM S36_L002_R1 submitted_unaligned CPTAC3 a30ddaaf-2586-4978-9f83-1316ea123567 03e991b6fbea96325838488666ca2281 {"aliquot_tag": "ALQ_8301714a", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02809.miRNA-Seq.S9_L006_R1.T C3L-02809 PDA miRNA-Seq tumor CPT0174700010 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGGCG_S9_L006_R1_001.unaln.bam 166126529 BAM S9_L006_R1 submitted_unaligned CPTAC3 d266c728-5f2d-4f88-93fc-275f604ffa61 17edbb1aab3301d16d5f3143f31057ad {"aliquot_tag": "ALQ_f528677d", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.miRNA-Seq.T.hg38 C3L-02809 PDA miRNA-Seq tumor CPT0174700010 1aa3fda7-744d-443b-8907-e653ee5056e0_mirnaseq_gdc_realn.bam 188227635 BAM harmonized CPTAC3 768835f8-4785-405e-843f-cfa56106cb4b 46f37f4c3e3a27ce71aaa20fee211c64 {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.RNA-Seq.chimeric.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.chimeric.gdc_realn.bam 30890242 BAM chimeric harmonized CPTAC3 57dc75ed-1e64-4853-a527-7c95febd44ca d306139d283c61585d1744e1241852d7 {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02809.RNA-Seq.chimeric.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.chimeric.gdc_realn.bam 43408460 BAM chimeric harmonized CPTAC3 f7b36f52-218f-4452-ba89-79cd96b53274 e7c0ee9075bb2631c324d640742a224a {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.RNA-Seq.genomic.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.genomic.gdc_realn.bam 7019982424 BAM genomic harmonized CPTAC3 fcadb0b3-5882-42fc-84fa-1ae534b5f55f 7478472bd2f5b4ad547c08a712351249 {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02809.RNA-Seq.genomic.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.genomic.gdc_realn.bam 9130664975 BAM genomic harmonized CPTAC3 c2eff32f-c4a7-4119-9702-2c4d3aa67d4e c03bde0f865d65c50f94662db078f69d {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.RNA-Seq.S18_L005_R1.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R1_001.fastq.gz 3768839415 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 fec185cf-c77d-4d82-988b-d5cbfdd25c70 d6ad8eabe2669cb9766f2b22776b38e1 {"aliquot_tag": "ALQ_f528677d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.RNA-Seq.S18_L005_R2.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R2_001.fastq.gz 4213239979 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 257d874a-4d88-428f-b288-8fbfcb67b18a 06ff9370e2bbee783d0dffedf408dbc9 {"aliquot_tag": "ALQ_f528677d", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.RNA-Seq.S21_L005_R1.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R1_001.fastq.gz 3510252624 FASTQ S21_L005_R1 submitted_unaligned CPTAC3 704a56a4-7f6e-4930-bddf-44ba1e59e6fd 0864afd3f1fdcd20ac6d10ab8335837b {"aliquot_tag": "ALQ_8301714a", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02809.RNA-Seq.S21_L005_R2.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R2_001.fastq.gz 3547038861 FASTQ S21_L005_R2 submitted_unaligned CPTAC3 2d6bffbd-1904-4b5f-89bd-2f151d719cb3 3efad2927f5cd9ce8c1708471740673d {"aliquot_tag": "ALQ_8301714a", "sample": "S21", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02809.RNA-Seq.transcriptome.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.transcriptome.gdc_realn.bam 9429987561 BAM transcriptome harmonized CPTAC3 79fd57eb-edd3-4996-a5e8-7be7a595bee2 7c0ebb9d030aaf9d49864c6f2258c12f {"aliquot_tag": "ALQ_8301714a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02809.RNA-Seq.transcriptome.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.transcriptome.gdc_realn.bam 9258465871 BAM transcriptome harmonized CPTAC3 967ca3f5-da1f-413a-a029-bdf66c76f964 2d0ded9561513f721365e9a4fb196cce {"aliquot_tag": "ALQ_f528677d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.Targeted.T C3L-02809 PDA Targeted_Sequencing tumor CPT0174700007 CPT0174700007.CustomSelection.RP-1303.PDO-18786.bam 4268814606 BAM submitted_aligned CPTAC3 9a32dd39-1dc9-4b33-bcdf-80fdb1283d5f f36573dc020dd9aa89260f372c7c5cda {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.Targeted.T.hg38 C3L-02809 PDA Targeted_Sequencing tumor CPT0174700007 e4e0dade-f15e-493a-8390-0ed607e6e4bd_targetedsequencing_gdc_realn.bam 6022386737 BAM harmonized CPTAC3 0aec5be7-5bcd-44c5-9136-68c9f3c124d4 2750071a9c5458a201b04b4a87e1388a {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.WGS.N C3L-02809 PDA WGS blood_normal CPT0175500002 CPT0175500002.WholeGenome.RP-1303.bam 60344179541 BAM submitted_aligned CPTAC3 6cf902ac-27a4-44fb-953f-67b943aa2f55 dad96fb599028850ddd7e553a747bd93 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02809.WGS.N.hg38 C3L-02809 PDA WGS blood_normal CPT0175500002 02d203d1-924c-4598-84b6-783ea0c1eeb6_wgs_gdc_realn.bam 88614212689 BAM harmonized CPTAC3 8fbeb5a7-7502-48ae-a274-8e597a32e1a2 e29e90610575e8efdb93918f9ab1aa51 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02809.WGS.T C3L-02809 PDA WGS tumor CPT0174700007 CPT0174700007.WholeGenome.RP-1303.bam 53215526725 BAM submitted_aligned CPTAC3 72f64b74-7d94-409b-a73c-02fe53cfa5a5 cf9fbed976ba2c9222d08030edc8f5a1 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.WGS.T.hg38 C3L-02809 PDA WGS tumor CPT0174700007 e4e0dade-f15e-493a-8390-0ed607e6e4bd_wgs_gdc_realn.bam 78997280733 BAM harmonized CPTAC3 16b73d61-fcb4-4a94-8701-8575c02551c2 177c9db43c15a9ab9bd457b4d9029c39 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.WXS.N C3L-02809 PDA WXS blood_normal CPT0175500002 CPT0175500002.WholeExome.RP-1303.bam 32086524469 BAM submitted_aligned CPTAC3 f14531b4-dd4e-46b8-9f3d-0292b0924ec7 997037ff24d02f9559387eecd035c868 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02809.WXS.N.hg38 C3L-02809 PDA WXS blood_normal CPT0175500002 02d203d1-924c-4598-84b6-783ea0c1eeb6_wxs_gdc_realn.bam 44662490694 BAM harmonized CPTAC3 943a11ee-ac73-4d2b-a82f-900e3899f5dc c5c7798320ddf37e2e53a154d3d67576 {"aliquot_tag": "ALQ_e9829daf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02809.WXS.T C3L-02809 PDA WXS tumor CPT0174700007 CPT0174700007.WholeExome.RP-1303.bam 57542423279 BAM submitted_aligned CPTAC3 0ffadc6c-b191-47df-a1aa-a5d665cd2e57 650081413a20ae89b84085f4f7a77e3d {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02809.WXS.T.hg38 C3L-02809 PDA WXS tumor CPT0174700007 e4e0dade-f15e-493a-8390-0ed607e6e4bd_wxs_gdc_realn.bam 79863956148 BAM harmonized CPTAC3 8e7510eb-b1b6-4312-9c7e-428bce0f3205 c84341e9c0cff053a10fddac096c46b7 {"aliquot_tag": "ALQ_7257c39f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.MethArray.Green.A C3L-02834 LUAD Methylation_Array tissue_normal CPT0174580007 203219670147_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 35c716c2-7551-4097-a2d4-24168cd74249 71c1d0e099ffe99f03c46de6c22e83be {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.MethArray.Green.T C3L-02834 LUAD Methylation_Array tumor CPT0174510006 203219670150_R05C01_Grn.idat 13676230 IDAT Green NA CPTAC3 83996f3d-b9b9-46de-97cd-da50e3bb884f 2ca76321d2b2dc18ffda749a03298c8d {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.MethArray.Red.A C3L-02834 LUAD Methylation_Array tissue_normal CPT0174580007 203219670147_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 d5372327-ccd9-4e83-8207-7e6913659f9a 62198434f1e2bfba47c8ca26f7b039b5 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.MethArray.Red.T C3L-02834 LUAD Methylation_Array tumor CPT0174510006 203219670150_R05C01_Red.idat 13676230 IDAT Red NA CPTAC3 61c26136-070e-45d6-8134-c96c3e459183 03a1374643aa404f5cd5ce0538514924 {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.miRNA-Seq.A.hg38 C3L-02834 LUAD miRNA-Seq tissue_normal CPT0174580010 8440718a-6af6-4007-a7a2-6c13323307f5_mirnaseq_gdc_realn.bam 221456857 BAM harmonized CPTAC3 338968c7-ffdd-4416-9ae7-33d41e737fd1 d588d7b8360843266c681dcc87cb7789 {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.miRNA-Seq.S39_L007_R1.T C3L-02834 LUAD miRNA-Seq tumor CPT0174510009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L007_R1_001.unaln.bam 202014826 BAM S39_L007_R1 submitted_unaligned CPTAC3 7daefd8f-98ef-4383-b603-f1675d90003d e52a3dc987e4b10c78549775660672e9 {"aliquot_tag": "ALQ_e5476623", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.miRNA-Seq.S9_L008_R1.A C3L-02834 LUAD miRNA-Seq tissue_normal CPT0174580010 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L008_R1_001.unaln.bam 200292653 BAM S9_L008_R1 submitted_unaligned CPTAC3 77b4a486-2cb3-417a-8e68-e3129be48c63 64200e5ec6fd2d543bc8b64bcb121f85 {"aliquot_tag": "ALQ_88908db7", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.miRNA-Seq.T.hg38 C3L-02834 LUAD miRNA-Seq tumor CPT0174510009 17f25ea0-e14f-41b4-b564-fdb3508f7697_mirnaseq_gdc_realn.bam 223875545 BAM harmonized CPTAC3 af7541c3-9cd9-4dd0-8d0b-634eadd0711b 3a2d81974099dc6dcf3fb0aad40bdf36 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.RNA-Seq.chimeric.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.chimeric.gdc_realn.bam 387311404 BAM chimeric harmonized CPTAC3 31022279-829f-4b3c-b68e-388e7ab81936 9b7913b348c6aed8253a31cc6388ffad {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.RNA-Seq.chimeric.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.chimeric.gdc_realn.bam 48330818 BAM chimeric harmonized CPTAC3 4b31fa1f-c3f2-4cdd-b54c-0e1ed41c8803 232eb2124bff32e406151f7bf6b55e37 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.RNA-Seq.genomic.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.genomic.gdc_realn.bam 9214493946 BAM genomic harmonized CPTAC3 b8d1b37a-103c-4b21-ba69-ea5625b85dcc 98765b4fdd86d37878f15f182a64f18f {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.RNA-Seq.genomic.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.genomic.gdc_realn.bam 9396104893 BAM genomic harmonized CPTAC3 b316ef0f-0ff3-47e6-8ba8-e2ca0f6ac8f9 fc1b1728ae1645912ce2041b5814d273 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.RNA-Seq.S11_L003_R1.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R1_001.fastq.gz 4370391562 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 ca9740e8-4c6a-4035-afd7-ce31585fec56 ca6885a74642b28643253c8553d48eba {"aliquot_tag": "ALQ_e5476623", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.RNA-Seq.S11_L003_R2.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R2_001.fastq.gz 4653988220 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 c1914d5e-4cd1-44d7-b9d3-c8bcb774dbbf 4605ed4fbedfc230f1db8d3ec8b5a473 {"aliquot_tag": "ALQ_e5476623", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.RNA-Seq.S1_L008_R1.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R1_001.fastq.gz 3954910237 FASTQ S1_L008_R1 submitted_unaligned CPTAC3 2e99d1c7-3e0e-4254-8f2f-f01ee5156a9f 6d3a94e472178e7d6d368c2bf1b7ad52 {"aliquot_tag": "ALQ_88908db7", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.RNA-Seq.S1_L008_R2.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R2_001.fastq.gz 4399984770 FASTQ S1_L008_R2 submitted_unaligned CPTAC3 d6d03f11-4a9f-4e92-9da3-c5941b2bfaa5 73a0f155282ce4fd5d46916b4be237ec {"aliquot_tag": "ALQ_88908db7", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.RNA-Seq.transcriptome.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.transcriptome.gdc_realn.bam 9600305533 BAM transcriptome harmonized CPTAC3 c940144e-af2e-4074-bf7d-76d0fcaa85ec 45fb81a05890b24409869c10bacf3e00 {"aliquot_tag": "ALQ_88908db7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.RNA-Seq.transcriptome.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.transcriptome.gdc_realn.bam 10612072010 BAM transcriptome harmonized CPTAC3 bdf6c334-ece0-460a-b138-0b8b0e356f15 ed1a9b800083356bbe9ee9c5e51e5123 {"aliquot_tag": "ALQ_e5476623", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.WGS.A C3L-02834 LUAD WGS tissue_normal CPT0174580007 CPT0174580007.WholeGenome.RP-1303.bam 61304027006 BAM submitted_aligned CPTAC3 eae7b4ce-2ae2-42aa-ae85-6c2443d6e4dd 3877a7b680db8c4814d4e0b139fb13e2 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.WGS.A.hg38 C3L-02834 LUAD WGS tissue_normal CPT0174580007 a5d3e17e-9986-4f1f-a853-6c740289e7b1_wgs_gdc_realn.bam 90943543429 BAM harmonized CPTAC3 733b2978-7e71-4d6b-91de-c4d6b485247a ebf2a268540e4190de56fb3c1ec82f97 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.WGS.N C3L-02834 LUAD WGS blood_normal CPT0175490002 CPT0175490002.WholeGenome.RP-1303.bam 63488874561 BAM submitted_aligned CPTAC3 cf36d3bf-b9d6-4128-8272-74df480369d4 bf7b790085186228a5bb532e920256b9 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02834.WGS.N.hg38 C3L-02834 LUAD WGS blood_normal CPT0175490002 46492e5c-fc4c-4807-bde0-27bd01c6e076_wgs_gdc_realn.bam 92195116366 BAM harmonized CPTAC3 fe611e6d-3dfc-4a93-9732-1546b7b5748a cfca6fd1e634f86e22eb14de7a51b3c9 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02834.WGS.T C3L-02834 LUAD WGS tumor CPT0174510006 CPT0174510006.WholeGenome.RP-1303.bam 57060876240 BAM submitted_aligned CPTAC3 0e30c0e7-573d-479f-a6f0-c57f70426ce1 28303b401d1ab87ae54cae103bbd2a1c {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.WGS.T.hg38 C3L-02834 LUAD WGS tumor CPT0174510006 8dda95f2-4b55-4a5e-9d05-9a98edfbc18a_wgs_gdc_realn.bam 83381846311 BAM harmonized CPTAC3 63adefb8-13ab-4ac6-b0d0-c5ae7b55a707 81b57f5e10e292d321e59803270b10fd {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.WXS.A C3L-02834 LUAD WXS tissue_normal CPT0174580007 CPT0174580007.WholeExome.RP-1303.bam 20043024342 BAM submitted_aligned CPTAC3 777b90c4-bc73-42c6-985d-aa667132bb36 1de7d0bd3c105b5fbe91a6df557a921d {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.WXS.A.hg38 C3L-02834 LUAD WXS tissue_normal CPT0174580007 a5d3e17e-9986-4f1f-a853-6c740289e7b1_wxs_gdc_realn.bam 28380008485 BAM harmonized CPTAC3 4625d458-c04b-4592-bf82-a1eadcf44548 21865a53073679a6ce948ad4853fa8a7 {"aliquot_tag": "ALQ_fef2955", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02834.WXS.N C3L-02834 LUAD WXS blood_normal CPT0175490002 CPT0175490002.WholeExome.RP-1303.bam 27202451705 BAM submitted_aligned CPTAC3 2f285552-8739-48e2-b2f8-de2888c7b88c c84740aa133cf3bf35d77fb327362262 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02834.WXS.N.hg38 C3L-02834 LUAD WXS blood_normal CPT0175490002 46492e5c-fc4c-4807-bde0-27bd01c6e076_wxs_gdc_realn.bam 38361451146 BAM harmonized CPTAC3 02884bf9-19df-4592-b58d-05a50a2c957a 429a98fe53d2c2897d9149973daad575 {"aliquot_tag": "ALQ_2fce2c7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02834.WXS.T C3L-02834 LUAD WXS tumor CPT0174510006 CPT0174510006.WholeExome.RP-1303.bam 22173742227 BAM submitted_aligned CPTAC3 a227840d-d7a9-49b9-8e52-1ceb51976522 db31b31b257b98692aae214b4ae680ee {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02834.WXS.T.hg38 C3L-02834 LUAD WXS tumor CPT0174510006 8dda95f2-4b55-4a5e-9d05-9a98edfbc18a_wxs_gdc_realn.bam 30131077957 BAM harmonized CPTAC3 5797ae05-0425-441f-b89a-2049618fb296 e0017742bc19a9dc0c2e307f436e89cb {"aliquot_tag": "ALQ_75f87bb2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.MethArray.Green.T C3L-02841 CCRCC Methylation_Array tumor CPT0172130006 203219650165_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f65bf0fe-defc-4a90-a0b6-693c58dd52aa 02385afcc36f752d97d533c7c68a213d {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.MethArray.Red.T C3L-02841 CCRCC Methylation_Array tumor CPT0172130006 203219650165_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 d2892acf-73e6-42de-9e1f-19acf055f9ba 44e2698ac8c9a3e06397c9a5ee6ee5e0 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.miRNA-Seq.A.hg38 C3L-02841 CCRCC miRNA-Seq tissue_normal CPT0172140006 38052566-34b3-40c4-ae5c-3734fe942c71_mirnaseq_gdc_realn.bam 182116204 BAM harmonized CPTAC3 e20dc903-37c0-49f3-984c-5e060622077a c1cf7585c35934f1e408ba68c0658ba7 {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02841.miRNA-Seq.S27_L004_R1.T C3L-02841 CCRCC miRNA-Seq tumor CPT0172130009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L004_R1_001.unaln.bam 182321424 BAM S27_L004_R1 submitted_unaligned CPTAC3 545b336f-9b87-4343-a117-02c29d886fdb f0da83d9f23788e00b5e8299f3dd2415 {"aliquot_tag": "ALQ_67c6426f", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.miRNA-Seq.S6_L004_R1.A C3L-02841 CCRCC miRNA-Seq tissue_normal CPT0172140006 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L004_R1_001.unaln.bam 164089689 BAM S6_L004_R1 submitted_unaligned CPTAC3 7e3da979-16ef-4f01-b9c1-5be3d8e2a26d 80813c5d1e542ca7684df5ba29d3b132 {"aliquot_tag": "ALQ_455983ee", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02841.miRNA-Seq.T.hg38 C3L-02841 CCRCC miRNA-Seq tumor CPT0172130009 82431e1b-8340-4256-947f-6daa0abfaa92_mirnaseq_gdc_realn.bam 202353370 BAM harmonized CPTAC3 e15a228c-c968-431b-ba58-53857085779c adb4dbbe9e394303b3bfb7917b8bbaee {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.RNA-Seq.chimeric.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.chimeric.gdc_realn.bam 29806171 BAM chimeric harmonized CPTAC3 98209cd8-f511-4e54-98d0-a91a51d01772 52a467f7c75f26d46df8981b1c8e7a48 {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02841.RNA-Seq.chimeric.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.chimeric.gdc_realn.bam 34051767 BAM chimeric harmonized CPTAC3 fb8a1543-8c3e-4513-8c32-db453a5cc3d5 86d59a0b211b60a86419d686d574ce6f {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.RNA-Seq.genomic.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.genomic.gdc_realn.bam 8239318740 BAM genomic harmonized CPTAC3 708bf3da-6066-4e58-927f-116e1b25cc86 993c4236bc4068c740d270cde63a73ab {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02841.RNA-Seq.genomic.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.genomic.gdc_realn.bam 7143477463 BAM genomic harmonized CPTAC3 2b0be062-44cb-439e-b588-217817002c91 409253b1daa1c86465d5497e30635f67 {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.RNA-Seq.S16_L004_R1.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3469919066 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 01d54fce-f4a5-47a9-9a27-ddf74b6ca8e5 c6ce8b71da37f067d1cfce7fd5ba4fcf {"aliquot_tag": "ALQ_67c6426f", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.RNA-Seq.S16_L004_R2.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3722604381 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 8935e95e-88af-4eaa-8c82-5b88b21674e8 f5ed52bcc03136daee7ed2d13a048dd6 {"aliquot_tag": "ALQ_67c6426f", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.RNA-Seq.S5_L008_R1.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3515107282 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 447373ad-15f4-4850-ba3c-1ddb67176f37 14e31b849c6a9a37b45cba3f22583c33 {"aliquot_tag": "ALQ_455983ee", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02841.RNA-Seq.S5_L008_R2.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3679801234 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 42bdd267-ddb8-49bd-b1b5-be4ea00eab1c 3bc95e418ab7c5e71efe995a02ccd45b {"aliquot_tag": "ALQ_455983ee", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02841.RNA-Seq.transcriptome.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.transcriptome.gdc_realn.bam 8662194785 BAM transcriptome harmonized CPTAC3 6aee807c-6115-4dbd-b347-4a5905c71b2e 5d14a4a4c7eb3dea7551534f75ea25af {"aliquot_tag": "ALQ_455983ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02841.RNA-Seq.transcriptome.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.transcriptome.gdc_realn.bam 10376938644 BAM transcriptome harmonized CPTAC3 25bb04e1-e955-4f27-9bfe-c311bff3a0f2 a02aaa75e41f1d857f446f0c626a73ff {"aliquot_tag": "ALQ_67c6426f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.WGS.N C3L-02841 CCRCC WGS blood_normal CPT0167390002 CPT0167390002.WholeGenome.RP-1303.bam 73061470291 BAM submitted_aligned CPTAC3 71903efc-bc86-4da5-b185-57dc7b96f414 b8168ac3b32b7ff8b99b360d2757eaf3 {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02841.WGS.N.hg38 C3L-02841 CCRCC WGS blood_normal CPT0167390002 91d0d200-7564-493e-8067-1a11dee04ea6_wgs_gdc_realn.bam 108598721635 BAM harmonized CPTAC3 5793de14-57c8-429c-b5af-1fa15e75b752 72029a65dbaa79e5f3b4b7e8e9794e1a {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02841.WGS.T C3L-02841 CCRCC WGS tumor CPT0172130006 CPT0172130006.WholeGenome.RP-1303.bam 61235981082 BAM submitted_aligned CPTAC3 ab37ae3b-0198-45cc-a6e2-035ac1a207da 68885fe161fa3c639aa5664361293cb3 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.WGS.T.hg38 C3L-02841 CCRCC WGS tumor CPT0172130006 505c63bd-d739-4d95-900d-bbb3a3f3fb58_wgs_gdc_realn.bam 89987217655 BAM harmonized CPTAC3 5109ae77-cc40-4d86-8c64-2815e98a8e7e 600e2b049608edc91ec8aa29f9c37c0b {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.WXS.N C3L-02841 CCRCC WXS blood_normal CPT0167390002 CPT0167390002.WholeExome.RP-1303.bam 29009901663 BAM submitted_aligned CPTAC3 a29924c2-db66-4c42-8044-30baaf37ca4c 45690665e923e56cbf750f6dee10a37a {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02841.WXS.N.hg38 C3L-02841 CCRCC WXS blood_normal CPT0167390002 91d0d200-7564-493e-8067-1a11dee04ea6_wxs_gdc_realn.bam 40298975960 BAM harmonized CPTAC3 ebbe4f82-443d-45a6-95a1-5b51f3628f89 bb1922be1886d2d8c46566f86475e2ca {"aliquot_tag": "ALQ_69fe0d74", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02841.WXS.T C3L-02841 CCRCC WXS tumor CPT0172130006 CPT0172130006.WholeExome.RP-1303.bam 21473160014 BAM submitted_aligned CPTAC3 3868a2a1-bd32-4db0-8903-3a1b7ae75b9b e46e58c7c0f1b13c7b81de9c1fe00211 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02841.WXS.T.hg38 C3L-02841 CCRCC WXS tumor CPT0172130006 505c63bd-d739-4d95-900d-bbb3a3f3fb58_wxs_gdc_realn.bam 28961019642 BAM harmonized CPTAC3 7683f996-e387-43d5-bc9e-c111647a8c0a ab310ccf83394aca0ebe87f520de6822 {"aliquot_tag": "ALQ_f7795ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.MethArray.Green.A C3L-02842 CCRCC Methylation_Array tissue_normal CPT0172080006 204930630111_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 64b7de48-3648-4e90-b0ae-a16f2a8d492a 8b1f8141b45f3a33a1a23a6d41d2ea90 {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.MethArray.Green.T C3L-02842 CCRCC Methylation_Array tumor CPT0172070006 203219650177_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 95c55306-ccd2-4f51-84c2-bad9146ef6ce 8f233faece069bf80bd3c2bc675de240 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.MethArray.Red.A C3L-02842 CCRCC Methylation_Array tissue_normal CPT0172080006 204930630111_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 9a70884c-a7ba-4454-bc54-e6fbc54a758e 7f8364fbe566afc0775ef7e311de3e97 {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.MethArray.Red.T C3L-02842 CCRCC Methylation_Array tumor CPT0172070006 203219650177_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 c6ab9374-3405-49f9-abbb-d6b5c2f12ee0 7aeba3045928353f3af90449a05d125e {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.miRNA-Seq.A.hg38 C3L-02842 CCRCC miRNA-Seq tissue_normal CPT0172080009 9b5ec0cd-3264-44b0-9d2a-3aa821effcf8_mirnaseq_gdc_realn.bam 173341579 BAM harmonized CPTAC3 21a9e2a8-286e-4b59-b16e-701f2ee3d097 c334a7d832dc1946b1c3644d51aad27d {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.miRNA-Seq.S26_L004_R1.T C3L-02842 CCRCC miRNA-Seq tumor CPT0172070009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L004_R1_001.unaln.bam 277817742 BAM S26_L004_R1 submitted_unaligned CPTAC3 4b0a3c57-383c-46bb-8731-2f0da8dfe2ad f28801b3be1a57eb92f46129de2dc8c0 {"aliquot_tag": "ALQ_591a370a", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.miRNA-Seq.S34_L003_R1.A C3L-02842 CCRCC miRNA-Seq tissue_normal CPT0172080009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L003_R1_001.unaln.bam 157041684 BAM S34_L003_R1 submitted_unaligned CPTAC3 b21b27b7-ff51-4c95-9057-9876e4e29d2d 1314911ab80b307c0503551618c2859b {"aliquot_tag": "ALQ_db4aa0db", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.miRNA-Seq.T.hg38 C3L-02842 CCRCC miRNA-Seq tumor CPT0172070009 f9233265-2619-45cf-8db3-0f7bea172b3b_mirnaseq_gdc_realn.bam 307695074 BAM harmonized CPTAC3 fc590504-92fb-4fc1-a300-2ca658bda64f 74311be64684e416ebeed24c443fc206 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.RNA-Seq.chimeric.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.chimeric.gdc_realn.bam 47019011 BAM chimeric harmonized CPTAC3 84eb3f7a-34d2-4035-bd5b-dc6e4995b945 1375cc22b309f2392861304e090fd61c {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.RNA-Seq.chimeric.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.chimeric.gdc_realn.bam 39676476 BAM chimeric harmonized CPTAC3 f907e8c9-c890-43b1-b202-e61ac69da378 71d98b77ea0ffcc8bb92f4623e7da147 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.RNA-Seq.genomic.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.genomic.gdc_realn.bam 7361108647 BAM genomic harmonized CPTAC3 0ed99de7-9826-432b-bac4-8f252a75a722 2358acdf9925a9a65b60ffb6080ce75a {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.RNA-Seq.genomic.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.genomic.gdc_realn.bam 7540375510 BAM genomic harmonized CPTAC3 61cce980-4eb9-4ccc-a0f9-fc2ea8d75987 071b88850e18864de04838623bc55517 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.RNA-Seq.S13_L004_R1.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3720502492 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 9982f9c9-86e3-44aa-9e18-8a8fcd3f7809 39a4fe47e4423507a54373e1364a2305 {"aliquot_tag": "ALQ_591a370a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.RNA-Seq.S13_L004_R2.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3959952511 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 2471fd79-72a9-4851-a843-966ed61cc81d d46cc7941897cf74f379025b09137954 {"aliquot_tag": "ALQ_591a370a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.RNA-Seq.S18_L007_R1.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R1_001.fastq.gz 3397109312 FASTQ S18_L007_R1 submitted_unaligned CPTAC3 992b3f55-0b5f-465e-986b-8cb01c7bba0e ce0cb6df03db23ac8d9767b6f68ac62d {"aliquot_tag": "ALQ_db4aa0db", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.RNA-Seq.S18_L007_R2.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R2_001.fastq.gz 3571857899 FASTQ S18_L007_R2 submitted_unaligned CPTAC3 d064b70a-12fe-4952-a3b6-1f323fb6321d f2c089f8a91e7e258a4bb1b323c61bdc {"aliquot_tag": "ALQ_db4aa0db", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.RNA-Seq.transcriptome.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.transcriptome.gdc_realn.bam 8412536816 BAM transcriptome harmonized CPTAC3 2b77cebb-b475-4429-8d73-e9aaea936d2f aad2a809dc8ffd167eb7f3da8464089b {"aliquot_tag": "ALQ_db4aa0db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.RNA-Seq.transcriptome.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.transcriptome.gdc_realn.bam 10353697231 BAM transcriptome harmonized CPTAC3 c655d0dc-9c7a-4d97-b8ae-21f93a544202 02534423e541ff792713e16a0fb0ff09 {"aliquot_tag": "ALQ_591a370a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.WGS.A C3L-02842 CCRCC WGS tissue_normal CPT0172080006 CPT0172080006.WholeGenome.RP-1303.bam 51783724928 BAM submitted_aligned CPTAC3 8ed8c59d-a5fb-486b-b8db-70f5dedb04b8 b8829a646adc2b18ef672bd9f635f661 {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.WGS.A.hg38 C3L-02842 CCRCC WGS tissue_normal CPT0172080006 f19c25ee-1228-4e75-ab14-b2bb89853fa4_wgs_gdc_realn.bam 76304620036 BAM harmonized CPTAC3 5275f29c-239d-4516-b35f-644ce2f842eb 3bae29da9646950cd347d6e27bf70b1a {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.WGS.N C3L-02842 CCRCC WGS blood_normal CPT0167410002 CPT0167410002.WholeGenome.RP-1303.bam 57344887018 BAM submitted_aligned CPTAC3 21eb25a5-833f-4968-99c4-a2c3ce434938 fbec0d428f8b5aba45df17450d2ae941 {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02842.WGS.N.hg38 C3L-02842 CCRCC WGS blood_normal CPT0167410002 1e2b050b-36cf-427e-bb7e-2ee2a52ae5bf_wgs_gdc_realn.bam 84070280600 BAM harmonized CPTAC3 7ef5fe97-4b43-4ec4-9142-14d5f68f4e04 42e57da62770bd08d587c0d4e8bdafc4 {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02842.WGS.T C3L-02842 CCRCC WGS tumor CPT0172070006 CPT0172070006.WholeGenome.RP-1303.bam 61580272973 BAM submitted_aligned CPTAC3 543397b9-616b-48a6-af65-4d020448eb52 a2c77104d60e9267fbb6d328a3cfa85c {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.WGS.T.hg38 C3L-02842 CCRCC WGS tumor CPT0172070006 f022c77d-0ec6-4c9a-9933-eb5a5ab80b6f_wgs_gdc_realn.bam 88736390102 BAM harmonized CPTAC3 3d054d78-e97f-4ffe-9dca-29610288e6ba e411d157e24f3a4f4663fb6ed67af889 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.WXS.A C3L-02842 CCRCC WXS tissue_normal CPT0172080006 CPT0172080006.WholeExome.RP-1303.bam 26570792350 BAM submitted_aligned CPTAC3 f62985fd-69f8-4ec6-bac2-a97ad4d9fa8c ffa7e115a56d2622b2207ea0538472da {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.WXS.A.hg38 C3L-02842 CCRCC WXS tissue_normal CPT0172080006 f19c25ee-1228-4e75-ab14-b2bb89853fa4_wxs_gdc_realn.bam 36533736826 BAM harmonized CPTAC3 2038f781-6bc7-4ca3-8473-b489706d856c 1543d717c475b329ab986922b7337d5d {"aliquot_tag": "ALQ_4bf5bd4a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02842.WXS.N C3L-02842 CCRCC WXS blood_normal CPT0167410002 CPT0167410002.WholeExome.RP-1303.bam 26466694050 BAM submitted_aligned CPTAC3 13f2dc79-0ad7-45eb-8cb3-54c4e75b0f89 90f32617f6ece6cfea34cf2cdf9990ce {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02842.WXS.N.hg38 C3L-02842 CCRCC WXS blood_normal CPT0167410002 1e2b050b-36cf-427e-bb7e-2ee2a52ae5bf_wxs_gdc_realn.bam 36467996628 BAM harmonized CPTAC3 87876dcf-69d9-455c-b626-3323db8616bb acce1b1ddfb88c940ee5b3277565d5bb {"aliquot_tag": "ALQ_448b760d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02842.WXS.T C3L-02842 CCRCC WXS tumor CPT0172070006 CPT0172070006.WholeExome.RP-1303.bam 18546446650 BAM submitted_aligned CPTAC3 311c5e04-e5be-41c9-8ee0-1c4fa1931d8a 496f8da26bda4f96c48ba110fbf08456 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02842.WXS.T.hg38 C3L-02842 CCRCC WXS tumor CPT0172070006 f022c77d-0ec6-4c9a-9933-eb5a5ab80b6f_wxs_gdc_realn.bam 26118880493 BAM harmonized CPTAC3 7d4b7945-10ec-4bd4-84f6-b2d1419b8a38 9ef637a9c584fa40ac0ae4839e866702 {"aliquot_tag": "ALQ_c9a52a9b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.MethArray.Green.T C3L-02856 CCRCC Methylation_Array tumor CPT0172010006 203219670019_R04C01_Grn.idat 13676232 IDAT Green NA CPTAC3 c0bb070a-45fb-4132-bd24-ed6004ebb0db 7ff9f2e91def107e9b0a22cf6ca7fcca {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.MethArray.Red.T C3L-02856 CCRCC Methylation_Array tumor CPT0172010006 203219670019_R04C01_Red.idat 13676232 IDAT Red NA CPTAC3 7fe9204a-9f10-4f8b-b49f-5cd21569ba39 e93dccc762d99d795cd73860ec784fd7 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.miRNA-Seq.S25_L004_R1.T C3L-02856 CCRCC miRNA-Seq tumor CPT0172010009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L004_R1_001.unaln.bam 224701599 BAM S25_L004_R1 submitted_unaligned CPTAC3 566f248e-f000-4f48-b825-40daab7ef0a1 e62531f807482fc220a8361857ae52c4 {"aliquot_tag": "ALQ_d65ac2aa", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.miRNA-Seq.T.hg38 C3L-02856 CCRCC miRNA-Seq tumor CPT0172010009 89866b63-d94b-4720-b380-3f9f27c4cc17_mirnaseq_gdc_realn.bam 248300800 BAM harmonized CPTAC3 f69b63fc-516b-46ec-8341-b8770fdc09bf 3e7034ca650f5d8e0cb1b50114d5317f {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.RNA-Seq.chimeric.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.chimeric.gdc_realn.bam 25066005 BAM chimeric harmonized CPTAC3 15c44828-2a38-4085-b8ed-b54fd25b315c 4f9fd650dea3b216d60e1eb991568121 {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.RNA-Seq.genomic.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.genomic.gdc_realn.bam 6392583130 BAM genomic harmonized CPTAC3 c5b03a2c-d4fc-4da8-b823-d1360c687157 875d92a6758e783d9a02a06ccf6c8ba2 {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.RNA-Seq.S14_L004_R1.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3087194892 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 a746a03f-1a50-44a4-ada0-5f47d9a2b405 933662ba5273a8dbe59dc3aa964518a6 {"aliquot_tag": "ALQ_d65ac2aa", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.RNA-Seq.S14_L004_R2.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3343909402 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 702e2897-0c49-4b97-a837-320a7908430d 80977eeeb160efb6a0b1d53e462d8538 {"aliquot_tag": "ALQ_d65ac2aa", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.RNA-Seq.transcriptome.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.transcriptome.gdc_realn.bam 9003440335 BAM transcriptome harmonized CPTAC3 be4b3b34-322b-4973-b506-a99ae49dd8ea aff4aec35ae0526163a5cf6873444c23 {"aliquot_tag": "ALQ_d65ac2aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.WGS.N C3L-02856 CCRCC WGS blood_normal CPT0167470002 CPT0167470002.WholeGenome.RP-1303.bam 59056080805 BAM submitted_aligned CPTAC3 a372d668-dddb-41eb-9202-88cf63c5041c d3d9a5a85aee1646a7550df023bf4cba {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02856.WGS.N.hg38 C3L-02856 CCRCC WGS blood_normal CPT0167470002 e833a430-f9c4-405f-a646-a54f3065fd43_wgs_gdc_realn.bam 85861686845 BAM harmonized CPTAC3 5d7a4913-bbc3-4732-ab0f-47c5a90cf3bf 017e68fac45289860294ac8e829bd816 {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02856.WGS.T C3L-02856 CCRCC WGS tumor CPT0172010006 CPT0172010006.WholeGenome.RP-1303.bam 54012441219 BAM submitted_aligned CPTAC3 691b6533-911c-4dd8-8a27-8677dfc311ca 6b23bcdcdc1699814c454b764e890741 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.WGS.T.hg38 C3L-02856 CCRCC WGS tumor CPT0172010006 46f53495-9f86-4bea-91a0-4ad98cad7612_wgs_gdc_realn.bam 80505494945 BAM harmonized CPTAC3 b3a7cfae-79bd-4d4b-b67e-32224cbfce40 ffdd239f4befbf8e0e63b14793934094 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.WXS.N C3L-02856 CCRCC WXS blood_normal CPT0167470002 CPT0167470002.WholeExome.RP-1303.bam 29316677542 BAM submitted_aligned CPTAC3 048af670-80a9-4781-a72d-0baddd38ebf0 39e5c1d1ba45337283ae1bf890c95fe1 {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02856.WXS.N.hg38 C3L-02856 CCRCC WXS blood_normal CPT0167470002 e833a430-f9c4-405f-a646-a54f3065fd43_wxs_gdc_realn.bam 40591545870 BAM harmonized CPTAC3 95260747-c8f7-4be5-802b-9603eba2270e 20d087546e923589175021f59d79c113 {"aliquot_tag": "ALQ_cbcb83ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02856.WXS.T C3L-02856 CCRCC WXS tumor CPT0172010006 CPT0172010006.WholeExome.RP-1303.bam 23256877853 BAM submitted_aligned CPTAC3 b61ef51a-1c9e-4813-9143-6fc71d523cbc 44d87c4ee6fe4dcc804935db18977349 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02856.WXS.T.hg38 C3L-02856 CCRCC WXS tumor CPT0172010006 46f53495-9f86-4bea-91a0-4ad98cad7612_wxs_gdc_realn.bam 31951025577 BAM harmonized CPTAC3 2b7a975c-464c-4077-8bb7-124ab81b3bf5 4e7e0f075c70ca65366ac499972542c1 {"aliquot_tag": "ALQ_46e5df3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.MethArray.Green.T C3L-02857 CCRCC Methylation_Array tumor CPT0203410006 203219650005_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1c64ffda-bdc5-4e96-9fcd-ea3b3d4f5608 31d48910dffb0d12cdbec5a98d422d6f {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.MethArray.Red.T C3L-02857 CCRCC Methylation_Array tumor CPT0203410006 203219650005_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5a60b667-f500-4a5b-aeac-edae0856036f e793f8a746a6cac4ba7a6cbab6a25dff {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.miRNA-Seq.S1_L008_R1.T C3L-02857 CCRCC miRNA-Seq tumor CPT0203410009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L008_R1_001.unaln.bam 209231424 BAM S1_L008_R1 submitted_unaligned CPTAC3 6e7313a5-bbcb-4b30-b15e-e70186af716f c561d06563a2171eacb743b9bb42ef40 {"aliquot_tag": "ALQ_d8f4bed4", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.miRNA-Seq.T.hg38 C3L-02857 CCRCC miRNA-Seq tumor CPT0203410009 ea154adb-92e7-4d50-a983-77be2aca9795_mirnaseq_gdc_realn.bam 232256779 BAM harmonized CPTAC3 2206a5f5-219c-4294-9adf-44b09de93968 89c05114a71fd0561da8bab62c64638d {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.RNA-Seq.chimeric.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.chimeric.gdc_realn.bam 361228727 BAM chimeric harmonized CPTAC3 95aa5cb9-389a-4088-a49f-36181f16ca76 fb7269168abddc56c81723b1305e758c {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.RNA-Seq.genomic.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.genomic.gdc_realn.bam 9225835659 BAM genomic harmonized CPTAC3 56b9b3a0-1932-4c23-8999-e53bf4cd56d6 7ee4cf4f23c345f2b563641d52a0ae07 {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.RNA-Seq.S9_L004_R1.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R1_001.fastq.gz 4101518275 FASTQ S9_L004_R1 submitted_unaligned CPTAC3 6dd28258-5f77-4e85-9297-1d405436765a c49dccd9dfc7803c7eaa1e908dd83dbd {"aliquot_tag": "ALQ_d8f4bed4", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.RNA-Seq.S9_L004_R2.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R2_001.fastq.gz 4549844513 FASTQ S9_L004_R2 submitted_unaligned CPTAC3 8ab6cb44-ccad-44f8-bd2b-c957583135ce c885ed4dafe6c5fb963a7711871aea03 {"aliquot_tag": "ALQ_d8f4bed4", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.RNA-Seq.transcriptome.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.transcriptome.gdc_realn.bam 11335636830 BAM transcriptome harmonized CPTAC3 12182f4c-479f-46d1-80dc-160a8f135104 09f72a870c93671381633fb6738eabeb {"aliquot_tag": "ALQ_d8f4bed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.WGS.N C3L-02857 CCRCC WGS blood_normal CPT0204060002 CPT0204060002.WholeGenome.RP-1303.bam 60349604247 BAM submitted_aligned CPTAC3 5cae61e7-2224-49d3-8bb9-190e6e160b50 b74e1705c949f864a2ed0458ea8f837a {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02857.WGS.N.hg38 C3L-02857 CCRCC WGS blood_normal CPT0204060002 3f93cb69-6a59-4f4a-a5f2-fe98ebf17dd0_wgs_gdc_realn.bam 88772387758 BAM harmonized CPTAC3 db2769fc-ee10-41a5-8131-5c2a8ca155b4 a40e4e6cc83a9334aea64f35fb61b946 {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02857.WGS.T C3L-02857 CCRCC WGS tumor CPT0203410006 CPT0203410006.WholeGenome.RP-1303.bam 64372151386 BAM submitted_aligned CPTAC3 6fa596a4-afce-4dc1-82d4-4b4ad146a506 64168711b8662983d56fc2e98bc61712 {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.WGS.T.hg38 C3L-02857 CCRCC WGS tumor CPT0203410006 fffbf591-33c9-45e6-868a-9b7ec881d315_wgs_gdc_realn.bam 95240597975 BAM harmonized CPTAC3 1363a8d9-d260-463b-84fa-54e9e34b1b9d 885ecef1e00e13bdf9410f86eba8bd2d {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.WXS.N C3L-02857 CCRCC WXS blood_normal CPT0204060002 CPT0204060002.WholeExome.RP-1303.bam 18840776459 BAM submitted_aligned CPTAC3 dd9417cc-8076-4486-8de2-cba83e35bd51 e1d68d096f12bbb81b10b09fa1529ac9 {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02857.WXS.N.hg38 C3L-02857 CCRCC WXS blood_normal CPT0204060002 3f93cb69-6a59-4f4a-a5f2-fe98ebf17dd0_wxs_gdc_realn.bam 25851946346 BAM harmonized CPTAC3 af99eac9-ea5a-4e28-a8b0-8812d904bda4 1d2a4a3b24e362c58564b7bb4d6278d4 {"aliquot_tag": "ALQ_a330c7d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02857.WXS.T C3L-02857 CCRCC WXS tumor CPT0203410006 CPT0203410006.WholeExome.RP-1303.bam 29954298793 BAM submitted_aligned CPTAC3 6d00c072-dfb5-4f05-afae-44005dfe9be9 bbe0ad2ae3365f75e14d4747163069c0 {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02857.WXS.T.hg38 C3L-02857 CCRCC WXS tumor CPT0203410006 fffbf591-33c9-45e6-868a-9b7ec881d315_wxs_gdc_realn.bam 41745966797 BAM harmonized CPTAC3 91d96a04-c7f3-4a2c-bfed-41e8e2b86436 d5fdd96c1542f4c574fc51ebd014e821 {"aliquot_tag": "ALQ_484ba345", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02858.MethArray.Green.T C3L-02858 CCRCC Methylation_Array tumor CPT0389160006 205589730156_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 abf35736-d279-4564-85d3-341f27e3be6e 4fcb547f3b2942ee5d8a860feaf15c29 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.MethArray.Red.T C3L-02858 CCRCC Methylation_Array tumor CPT0389160006 205589730156_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 cb062325-65e5-4d62-b57c-6f1ebe268477 c5d67379471768a229e4cc7e46c8da58 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.miRNA-Seq.S19_L001_R1.T C3L-02858 CCRCC miRNA-Seq tumor CPT0389160009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTTTCG_S19_L001_R1_001.unaln.bam 270092493 BAM S19_L001_R1 submitted_unaligned CPTAC3 ac3ceeed-a6a1-4c9a-b151-1e15a30cb131 593e3d2d59658c716fc536b1e8df0024 {"aliquot_tag": "ALQ_5af7a3cf", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.miRNA-Seq.T.hg38 C3L-02858 CCRCC miRNA-Seq tumor CPT0389160009 ca65ab18-0f28-4a2c-8aa7-5858314f5204_mirnaseq_gdc_realn.bam 295062336 BAM harmonized CPTAC3 9f20edf5-30b6-45e9-b83c-0b702bf07fc3 2a48c37a262b280e10d6cccb90ae16d0 {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.RNA-Seq.chimeric.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.chimeric.gdc_realn.bam 398460299 BAM chimeric harmonized CPTAC3 a6b61a06-d0a1-4d6e-bb28-2e8b45a4d3db 1e2745a55ad6072ec622ca85965c561f {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.RNA-Seq.genomic.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.genomic.gdc_realn.bam 8129284436 BAM genomic harmonized CPTAC3 eef655d7-3a9a-4514-a0f1-1ac74d4b0df9 1e4031453e1f5b5e0bc00288037f637a {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.RNA-Seq.S16_L004_R1.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R1_001.fastq.gz 3869705493 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 52d3a301-352c-448f-aad0-95a62e05dc6e 7e10c430f87c49bcddc8ff248a47c1fb {"aliquot_tag": "ALQ_5af7a3cf", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.RNA-Seq.S16_L004_R2.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R2_001.fastq.gz 4315068548 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 168c8828-aaec-4ae0-9dd6-3b90f6b0972a 787169beb09d846a2719508211c584e7 {"aliquot_tag": "ALQ_5af7a3cf", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.RNA-Seq.transcriptome.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.transcriptome.gdc_realn.bam 10178195314 BAM transcriptome harmonized CPTAC3 6d04e6b6-ec5e-4129-bc12-481337b9b59b 33fc2414f5d3ed294ac47a793d6cfb5a {"aliquot_tag": "ALQ_5af7a3cf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.scRNA-Seq.S2_L003_R1.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S2_L003_R1_001.fastq.gz 4217981886 FASTQ S2_L003_R1 submitted_unaligned CPTAC3 9ad559ec-11b2-495d-b35b-b6062981259a ef09102d5ac8e9096915caf7c7772524 {"aliquot_tag": "ALQ_2446df72", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.scRNA-Seq.S2_L003_R2.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S2_L003_R2_001.fastq.gz 14539185616 FASTQ S2_L003_R2 submitted_unaligned CPTAC3 0c4fda12-61cc-4a98-ae5e-bb10fea2a063 1165c9ebb8c45483c2f53094d8684da7 {"aliquot_tag": "ALQ_2446df72", "sample": "S2", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.scRNA-Seq.S4_L002_R1.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S4_L002_R1_001.fastq.gz 4489211288 FASTQ S4_L002_R1 submitted_unaligned CPTAC3 6ff5d52e-c39c-4f31-9e4e-ff7393ff56dc a753a4926fa3fb24de876b9690ec00f2 {"aliquot_tag": "ALQ_2446df72", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.scRNA-Seq.S4_L002_R2.T C3L-02858 CCRCC scRNA-Seq tumor CPT0389160004 20220127_WUSTL_TWFU-CPT0389160004-Y1N1Z1_1Bn1_1_CGTCCACCTG+CATTCATGAC_S4_L002_R2_001.fastq.gz 15591162519 FASTQ S4_L002_R2 submitted_unaligned CPTAC3 aae45fdc-c56a-43cb-96b3-a032d94088ba c1996d22e07505a2c4c9d5d72bc3a6dd {"aliquot_tag": "ALQ_2446df72", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.WGS.N C3L-02858 CCRCC WGS blood_normal CPT0389210002 CPT0389210002.WholeGenome.RP-2158.bam 25054454450 BAM submitted_aligned CPTAC3 58c0c24c-bf68-4ca3-9218-36a0b6e30c3e de3a117e5382accea2c53d2b372e1434 {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02858.WGS.N.hg38 C3L-02858 CCRCC WGS blood_normal CPT0389210002 60184fd8-1ab5-4ec8-8973-9dbd5a359d60_wgs_gdc_realn.bam 76418261666 BAM harmonized CPTAC3 abd46a96-622b-4902-9ac7-afc3318e4ccc 206e482303f2177cdca55e893127a1ae {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02858.WGS.T C3L-02858 CCRCC WGS tumor CPT0389160006 CPT0389160006.WholeGenome.RP-2158.bam 24276047510 BAM submitted_aligned CPTAC3 2649a862-e3cd-47c4-a2d4-ed2ac9545f03 a91c6a97dfd03ec81dcd18d6b67321bb {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.WGS.T.hg38 C3L-02858 CCRCC WGS tumor CPT0389160006 4776ee89-e0e5-4b21-830d-1ac1b374648c_wgs_gdc_realn.bam 74980546104 BAM harmonized CPTAC3 89632ba2-7a09-4444-9ea7-c7103abd91ac ba569bcb3fa15a78db5c294fcc2a44b3 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.WXS.N C3L-02858 CCRCC WXS blood_normal CPT0389210002 CPT0389210002.WholeExome.RP-1303.bam 31546235610 BAM submitted_aligned CPTAC3 4c494225-3ac0-4077-a11c-a992c86dcb24 c762135b7ad97ee47fa3541dbd46d65b {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02858.WXS.N.hg38 C3L-02858 CCRCC WXS blood_normal CPT0389210002 60184fd8-1ab5-4ec8-8973-9dbd5a359d60_wxs_gdc_realn.bam 43285612982 BAM harmonized CPTAC3 166ab79e-83c8-4eee-922f-d9b11090d471 c6e182b0186aa114c6d458f03bd12097 {"aliquot_tag": "ALQ_f991d4f9", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-02858.WXS.T C3L-02858 CCRCC WXS tumor CPT0389160006 CPT0389160006.WholeExome.RP-1303.bam 31003152591 BAM submitted_aligned CPTAC3 a2f86efe-db9e-457a-934a-8ea1dba6f410 d0c965820accfe71a11181b09ec13835 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02858.WXS.T.hg38 C3L-02858 CCRCC WXS tumor CPT0389160006 4776ee89-e0e5-4b21-830d-1ac1b374648c_wxs_gdc_realn.bam 42500362623 BAM harmonized CPTAC3 ea695f22-ac6b-48ce-9d2c-4b0791b6078e 7d03e5144f47d659f272ae853ab6a074 {"aliquot_tag": "ALQ_ca48be5e", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-02860.MethArray.Green.T C3L-02860 CCRCC Methylation_Array tumor CPT0389250006 205589740002_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0a7e9031-cb6b-41f4-bce0-1742f6e30dff ebcb84d979e3de3ee47f100c7164b98a {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.MethArray.Red.T C3L-02860 CCRCC Methylation_Array tumor CPT0389250006 205589740002_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 a221e834-4091-4e8e-91ae-1da9efc27bbf f6d56cf2fb084f1b2f23153f90c68862 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.miRNA-Seq.S10_L001_R1.T C3L-02860 CCRCC miRNA-Seq tumor CPT0389250009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGTACG_S10_L001_R1_001.unaln.bam 279894472 BAM S10_L001_R1 submitted_unaligned CPTAC3 a72a43f7-7df8-4d68-a365-91fd5bc909ba 1e5fa80fa870022132797edca109358b {"aliquot_tag": "ALQ_9bc3abb1", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.miRNA-Seq.T.hg38 C3L-02860 CCRCC miRNA-Seq tumor CPT0389250009 94a13d2b-7663-40bb-994f-696fc077ddb8_mirnaseq_gdc_realn.bam 296755766 BAM harmonized CPTAC3 83334648-84ab-428b-aee9-c3118b318b5f 1ca692610b0d7df389ac8f3c4030f6a8 {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.RNA-Seq.chimeric.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.chimeric.gdc_realn.bam 207910190 BAM chimeric harmonized CPTAC3 87f24e0a-c3c8-4a5c-8a5f-ef08bb39f327 bb1c57adec6e052274f60d9c32b12538 {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.RNA-Seq.genomic.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.genomic.gdc_realn.bam 6442618902 BAM genomic harmonized CPTAC3 2d251e7c-39d5-4713-9788-91b66e90f132 fe071daf52e04f28f6fd51d53fe32de0 {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.RNA-Seq.S13_L004_R1.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R1_001.fastq.gz 2933315609 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 0b222aed-7df5-42af-892a-fd96f5f1af65 725f37ecb62fff961b515afab0f40de1 {"aliquot_tag": "ALQ_9bc3abb1", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.RNA-Seq.S13_L004_R2.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R2_001.fastq.gz 3295638762 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 0d342b02-6726-406a-9570-94487e8fb1d6 f471f0c505599e41763b0b8c29a680a1 {"aliquot_tag": "ALQ_9bc3abb1", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.RNA-Seq.transcriptome.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.transcriptome.gdc_realn.bam 8253067438 BAM transcriptome harmonized CPTAC3 4a929423-6eab-413b-8813-eaf1c17d4f4c 016c0bca982080a1687960c49ae0874c {"aliquot_tag": "ALQ_9bc3abb1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.WGS.N C3L-02860 CCRCC WGS blood_normal CPT0389300002 CPT0389300002.WholeGenome.RP-2158.bam 23099398294 BAM submitted_aligned CPTAC3 ec546f47-6a77-4084-b2d5-eda81012bc21 bceed66ace607e5869bdadbed2a302af {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02860.WGS.N.hg38 C3L-02860 CCRCC WGS blood_normal CPT0389300002 67807703-4cbc-44f7-a84d-8d321c5641ff_wgs_gdc_realn.bam 70493467037 BAM harmonized CPTAC3 b7d2d778-bc89-4939-a27b-ec7242e82b81 9897310b3613d4762198b5611e508c71 {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02860.WGS.T C3L-02860 CCRCC WGS tumor CPT0389250006 CPT0389250006.WholeGenome.RP-2158.bam 24287929743 BAM submitted_aligned CPTAC3 bd8d009a-411c-4cd1-8e57-d4a037698ceb 304b9ec523a95692e658c5ad1bba56d6 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.WGS.T.hg38 C3L-02860 CCRCC WGS tumor CPT0389250006 3ddd9d82-58a5-42de-82ff-522ad4bffb4c_wgs_gdc_realn.bam 72969243980 BAM harmonized CPTAC3 81638b58-27e4-44f1-80ec-f40395767e88 f5a3a0556312b8049d93f40904985858 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.WXS.N C3L-02860 CCRCC WXS blood_normal CPT0389300002 CPT0389300002.WholeExome.RP-1303.bam 23753257730 BAM submitted_aligned CPTAC3 927e7092-9c02-4912-bd20-42e6e8bb567c 242c51e3ea5ac5854a013be7d2975c39 {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02860.WXS.N.hg38 C3L-02860 CCRCC WXS blood_normal CPT0389300002 67807703-4cbc-44f7-a84d-8d321c5641ff_wxs_gdc_realn.bam 32894905881 BAM harmonized CPTAC3 5c30e265-9ad4-4125-bca6-782cdaa692d6 902e3090c1c1f9ea7c8bc64f1e5972d8 {"aliquot_tag": "ALQ_fad2eec", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-02860.WXS.T C3L-02860 CCRCC WXS tumor CPT0389250006 CPT0389250006.WholeExome.RP-1303.bam 20835930517 BAM submitted_aligned CPTAC3 a064e1a3-1a24-4a5f-92e0-039c82654991 b9fde77c54fcbc3c6f4d96938f6c1717 {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02860.WXS.T.hg38 C3L-02860 CCRCC WXS tumor CPT0389250006 3ddd9d82-58a5-42de-82ff-522ad4bffb4c_wxs_gdc_realn.bam 29359010818 BAM harmonized CPTAC3 425b4499-d17b-4b10-a4a0-f7e99b31e1e1 83be3cba80f31aba09e20fab88e2120b {"aliquot_tag": "ALQ_b7cb620", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-02888.ANN_d41b87f7.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.chimeric.gdc_realn.bam 337542318 BAM chimeric harmonized CPTAC3 abaf9c8f-6aa6-44a4-a44a-5cfa3e607556 4b6bbce9dcd7904f9570e2856d5d45cf {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.ANN_d41b87f7.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.genomic.gdc_realn.bam 10623303199 BAM genomic harmonized CPTAC3 c48344b4-6910-40f9-932e-31fc61fb8aef 512ba394ca093e74034500a7ec00c57a {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.ANN_d41b87f7.RNA-Seq.S9_L007_R1.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R1_001.fastq.gz 4650540759 FASTQ S9_L007_R1 submitted_unaligned CPTAC3 393f7304-aade-4eca-bc5e-dcb06cb2346b 988ceba63796afefb5afb6d8ea608fff {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.ANN_d41b87f7.RNA-Seq.S9_L007_R2.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R2_001.fastq.gz 5329470624 FASTQ S9_L007_R2 submitted_unaligned CPTAC3 b9b96461-e577-485d-b368-8f0ed1e4131b e6ce1fb6dab37e603a39e4090e1fd87e {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.ANN_d41b87f7.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.transcriptome.gdc_realn.bam 14955729450 BAM transcriptome harmonized CPTAC3 208c9eb7-0f67-4ee8-a416-157d266175d3 dc0bee1e0c997aef2e83e4e16f40531f {"aliquot_tag": "ANN_d41b87f7", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_230ed79a.WXS.T C3L-02888 PDA WXS tumor CPT0166540034 CPT0166540034.WholeExome.RP-1303.bam 22062083549 BAM submitted_aligned CPTAC3 588209ae-1be5-48f0-be31-5dae47c1bb25 496d2a7d406933be2bf71e0448f0d6b4 {"aliquot_tag": "DUP_230ed79a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_230ed79a.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540034 9108d26c-4d40-4d63-98e5-7666ceb9e36c_wxs_gdc_realn.bam 30987766785 BAM harmonized CPTAC3 7031786c-5582-4d21-a380-423077b3e35c 26c3f8dca88144aefaa3541ffcd37ba3 {"aliquot_tag": "DUP_230ed79a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_24b0cc6d.WXS.N C3L-02888 PDA WXS blood_normal CPT0166580002 CPT0166580002.WholeExome.RP-1303.bam 23287968778 BAM submitted_aligned CPTAC3 66795e81-fe8a-4158-88cd-60bc4b14028c f912abc76685c5bf6214d72860c09a46 {"aliquot_tag": "DUP_24b0cc6d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02888.DUP_24b0cc6d.WXS.N.hg38 C3L-02888 PDA WXS blood_normal CPT0166580002 b34b281b-75d9-4342-9b38-715fb83f8bc2_wxs_gdc_realn.bam 32447372038 BAM harmonized CPTAC3 9cb4b15c-f17b-406a-b420-17e50680aa8b 92aa265ad7ce508c61adabcf80a57063 {"aliquot_tag": "DUP_24b0cc6d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02888.DUP_5dbfab27.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.chimeric.gdc_realn.bam 65556272 BAM chimeric harmonized CPTAC3 f2b71889-5dfc-4c1f-a05f-7e89e0b8c218 235b092090cdcd584186b40e444dd5d6 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_5dbfab27.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.genomic.gdc_realn.bam 7155004157 BAM genomic harmonized CPTAC3 8fad3910-942b-48f3-beed-e2cb61056130 10a860088650a7fd63a585e73195df41 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_5dbfab27.RNA-Seq.S18_L005_R1.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3503547846 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 6bb5b4bf-eccf-4cca-9a7f-b89a0398deb6 2382f1a75e919f57e259072df2d21713 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_5dbfab27.RNA-Seq.S18_L005_R2.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3829335080 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 d35f7e8f-539a-4639-a9cf-0fe318eb24c6 6db335032c16afee7a4b0d8d6412adf6 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_5dbfab27.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.transcriptome.gdc_realn.bam 10845991006 BAM transcriptome harmonized CPTAC3 366d3e3b-539d-4ebf-95e5-403b17b7a3d7 674d56b569352ab9825eccc404729859 {"aliquot_tag": "DUP_5dbfab27", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_bd6a4239.WXS.T C3L-02888 PDA WXS tumor CPT0166540033 CPT0166540033.WholeExome.RP-1303.bam 37208515996 BAM submitted_aligned CPTAC3 0bb7e9c1-18d7-4cb5-b0a3-6ab8c886b045 085967d10db5db7c8a1f6c0f1a4f8258 {"aliquot_tag": "DUP_bd6a4239", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_bd6a4239.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540033 3285e42d-f066-42a4-a5b7-073132976f88_wxs_gdc_realn.bam 51339995298 BAM harmonized CPTAC3 46a34576-271e-43a3-9c02-a238ac35e02d 9e6bd6b50d14763ec2c635acf3039684 {"aliquot_tag": "DUP_bd6a4239", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_c0c7d540.RNA-Seq.chimeric.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.chimeric.gdc_realn.bam 28648617 BAM chimeric harmonized CPTAC3 823f1dcc-b8e1-4038-82fc-3a95feceab22 3b5b3f375891f7f8149bc9e73c404349 {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02888.DUP_c0c7d540.RNA-Seq.genomic.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.genomic.gdc_realn.bam 6504658615 BAM genomic harmonized CPTAC3 6f6aaf10-f845-4ade-8c6a-590c311e8cbe cdd4c48acea5da8632392bb7f0aa90c9 {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02888.DUP_c0c7d540.RNA-Seq.S25_L008_R1.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R1_001.fastq.gz 3069406278 FASTQ S25_L008_R1 submitted_unaligned CPTAC3 15edeb77-4c31-4c22-9f4a-aa1f6014afd4 cbed15b22ffb86a77f11bf3e44e8551e {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02888.DUP_c0c7d540.RNA-Seq.S25_L008_R2.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R2_001.fastq.gz 3424055467 FASTQ S25_L008_R2 submitted_unaligned CPTAC3 119e10fb-c39b-4d79-8bda-aea21d3019d7 60a2d6531d5cc71a31955602a8e0326b {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S25", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02888.DUP_c0c7d540.RNA-Seq.transcriptome.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.transcriptome.gdc_realn.bam 8245792712 BAM transcriptome harmonized CPTAC3 02bf94e3-fcac-476b-b416-eac687fb15c2 3d61e980192cf6090c7f7f5ccea61e49 {"aliquot_tag": "DUP_c0c7d540", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02888.DUP_ca6d72af.WXS.T C3L-02888 PDA WXS tumor CPT0166540032 CPT0166540032.WholeExome.RP-1303.bam 24021156492 BAM submitted_aligned CPTAC3 eeada0d4-a3bd-4b98-97cd-e8fd8e8920db 501a483994d16b5a7024d66cd66b3fd1 {"aliquot_tag": "DUP_ca6d72af", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02888.DUP_ca6d72af.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540032 e7d75cba-4f43-4692-91fc-85b15c7fec47_wxs_gdc_realn.bam 33430916634 BAM harmonized CPTAC3 70c43eaa-9e3d-43ca-bca8-ffb239508b44 4ef918d16228689a87dbfe5af187fd05 {"aliquot_tag": "DUP_ca6d72af", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.MethArray.Green.T C3L-02890 PDA Methylation_Array tumor CPT0166650009 203561620008_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 1b3192eb-a5d8-404c-bbab-1e6a4d708b4a 993e68dbce47c4b85844f30725390bc5 {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.MethArray.Red.T C3L-02890 PDA Methylation_Array tumor CPT0166650009 203561620008_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 718996ff-e713-40d7-8bdb-38c9e40a5f34 ca49d1c0b35804c29f65a2015d9e2f4b {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.miRNA-Seq.S25_L005_R1.T C3L-02890 PDA miRNA-Seq tumor CPT0166650012 190712_UNC32-K00270_0192_BH7HL3BBXY_CGATGT_S25_L005_R1_001.unaln.bam 241719651 BAM S25_L005_R1 submitted_unaligned CPTAC3 07e60f8e-2863-4c0d-b060-366547e9b06a 57d387208282753513576517ded1e8a6 {"aliquot_tag": "ALQ_43af4b33", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.miRNA-Seq.T.hg38 C3L-02890 PDA miRNA-Seq tumor CPT0166650012 aa4b1d34-d650-4d6d-beb1-29960c9bde17_mirnaseq_gdc_realn.bam 272577730 BAM harmonized CPTAC3 680dc196-6446-4352-ac94-6f80f2eb2d70 04683c19d3de6f8a8779d31fa9c3475b {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.RNA-Seq.chimeric.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.chimeric.gdc_realn.bam 44851168 BAM chimeric harmonized CPTAC3 c61d00ea-2066-4646-8181-4bec519c5fc3 cc42c710a7899897c4be1d8dae78457f {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.RNA-Seq.genomic.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.genomic.gdc_realn.bam 8746077767 BAM genomic harmonized CPTAC3 6fb6346c-b5fd-43f7-b05b-5ff302521bda 90a16a4f9ea771ef5e06473f7bf1cdfd {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.RNA-Seq.S10_L003_R1.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R1_001.fastq.gz 4215019566 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 ab9a6334-5279-4b73-b145-fefb71dc16f7 a7bdce574db12f7b5675538317323bbe {"aliquot_tag": "ALQ_43af4b33", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.RNA-Seq.S10_L003_R2.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R2_001.fastq.gz 4291813512 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 8c02a787-6b3d-42d6-aeac-22a8491a5b58 dba00036d74f85c8800958152cc28046 {"aliquot_tag": "ALQ_43af4b33", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.RNA-Seq.transcriptome.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.transcriptome.gdc_realn.bam 10948730597 BAM transcriptome harmonized CPTAC3 e831aee2-8983-4e61-9cdf-21f7af182cfb e00e5d3e9cbd6c45879da39c098330a2 {"aliquot_tag": "ALQ_43af4b33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.Targeted.T C3L-02890 PDA Targeted_Sequencing tumor CPT0166650009 CPT0166650009.CustomSelection.RP-1303.PDO-18786.bam 4247718728 BAM submitted_aligned CPTAC3 1b8ec7a3-4af2-4431-8f2f-1977381cf5a3 eb9b55b8a6166c1887d39c9b9e77c2ed {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.Targeted.T.hg38 C3L-02890 PDA Targeted_Sequencing tumor CPT0166650009 348499bf-d9cb-4bc4-baa4-7b72b3f62956_targetedsequencing_gdc_realn.bam 5890530749 BAM harmonized CPTAC3 6e4ee43c-12f1-4260-ba13-e084f20c8cbe 4000e79fbecbdbfa52a675ab98ce063f {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.WGS.N C3L-02890 PDA WGS blood_normal CPT0166690002 CPT0166690002.WholeGenome.RP-1303.bam 65473346392 BAM submitted_aligned CPTAC3 bd486fb4-4189-43f3-869d-20092c5fe37c 69f2dc09c2c249a2ab058da1e24aa0fa {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02890.WGS.N.hg38 C3L-02890 PDA WGS blood_normal CPT0166690002 2358f2ec-b9f0-44f6-be2c-270b74ce2482_wgs_gdc_realn.bam 94735923334 BAM harmonized CPTAC3 9bd78a6a-d4fc-4750-9f39-4e4b9910e32f 527f2b16c87ddbfadc90e352bab0ee02 {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02890.WGS.T C3L-02890 PDA WGS tumor CPT0166650009 CPT0166650009.WholeGenome.RP-1303.bam 60612313509 BAM submitted_aligned CPTAC3 9541b920-fe37-4f35-8ba6-e701cf7220a1 ef7b6651285384cd2cf8f1062c4e2090 {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.WGS.T.hg38 C3L-02890 PDA WGS tumor CPT0166650009 348499bf-d9cb-4bc4-baa4-7b72b3f62956_wgs_gdc_realn.bam 88960068667 BAM harmonized CPTAC3 69bede23-40d4-4ba0-987a-dcdbd7643515 64f352eb12ad31eb7d75886ec98072da {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.WXS.N C3L-02890 PDA WXS blood_normal CPT0166690002 CPT0166690002.WholeExome.RP-1303.bam 25768779338 BAM submitted_aligned CPTAC3 bd97a890-7e3b-4859-98a0-e3c11adc917a 940a73a7a843c43853ab04197dc0c8b3 {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02890.WXS.N.hg38 C3L-02890 PDA WXS blood_normal CPT0166690002 2358f2ec-b9f0-44f6-be2c-270b74ce2482_wxs_gdc_realn.bam 35701990276 BAM harmonized CPTAC3 085bc27e-577d-4c57-b74a-479692f48de0 ba096209380f065d81f0146529a4004e {"aliquot_tag": "ALQ_9f449773", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02890.WXS.T C3L-02890 PDA WXS tumor CPT0166650009 CPT0166650009.WholeExome.RP-1303.bam 51526884822 BAM submitted_aligned CPTAC3 20b93b4c-60d9-4bb1-981e-1531cb3c9151 06485abcb33cad0f0533e245b259a66b {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02890.WXS.T.hg38 C3L-02890 PDA WXS tumor CPT0166650009 348499bf-d9cb-4bc4-baa4-7b72b3f62956_wxs_gdc_realn.bam 71572146270 BAM harmonized CPTAC3 db40c095-79eb-4ac4-b006-de7092adf87c 5bd0e674cd97472e17c0bf9da7fa427d {"aliquot_tag": "ALQ_cd66a3fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.MethArray.Green.A C3L-02891 LSCC Methylation_Array tissue_normal CPT0218310006 203219640102_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c5ba1306-03ef-4bf8-b7f6-1316cca10f39 94bea50201db44a6405c99a540887288 {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.MethArray.Green.T C3L-02891 LSCC Methylation_Array tumor CPT0218280006 203219670180_R05C01_Grn.idat 13676242 IDAT Green NA CPTAC3 df92a3ba-f783-41b7-9e18-205081cdbfbc 8d07c9e0db7a97099a8d445b4562723a {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.MethArray.Red.A C3L-02891 LSCC Methylation_Array tissue_normal CPT0218310006 203219640102_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 3c6c9a69-90d8-43a6-8b32-33016e9cf967 0bc4f741075af44882aa61de075f7e6d {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.MethArray.Red.T C3L-02891 LSCC Methylation_Array tumor CPT0218280006 203219670180_R05C01_Red.idat 13676242 IDAT Red NA CPTAC3 ab1023ee-dd54-4a05-bf48-ccb05d851722 8bb4caf142f1bcb8d858c4cf8974673d {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.miRNA-Seq.A.hg38 C3L-02891 LSCC miRNA-Seq tissue_normal CPT0218310009 6998fab8-18ba-42a4-bb78-151c8915b8fb_mirnaseq_gdc_realn.bam 228679367 BAM harmonized CPTAC3 e1dfc1c0-0f7b-4914-b4d8-1f7857457a4c f3e41982365965a6440de574d1a4fc88 {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.miRNA-Seq.S21_L003_R1.A C3L-02891 LSCC miRNA-Seq tissue_normal CPT0218310009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACCGG_S21_L003_R1_001.unaln.bam 204353229 BAM S21_L003_R1 submitted_unaligned CPTAC3 bcf9d57c-4838-44c5-a92e-1d2079c0855c 7eae47619dab8baeaf5ae19531c835c3 {"aliquot_tag": "ALQ_b5cda08", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.miRNA-Seq.S27_L002_R1.T C3L-02891 LSCC miRNA-Seq tumor CPT0218280009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGTACG_S27_L002_R1_001.unaln.bam 149149019 BAM S27_L002_R1 submitted_unaligned CPTAC3 8e213286-d36c-4ce1-80f1-6d6b9d1dda38 93561a574d5035360fb9ba66cabf511f {"aliquot_tag": "ALQ_cd106bdc", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.miRNA-Seq.T.hg38 C3L-02891 LSCC miRNA-Seq tumor CPT0218280009 1df12bc0-d937-45bf-81bd-37253256e37d_mirnaseq_gdc_realn.bam 169162035 BAM harmonized CPTAC3 fc5bfe8f-b3c8-49f9-a777-e239fd5cbea4 5fb312e8702ce040bf953bb0257ff64c {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.RNA-Seq.chimeric.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.chimeric.gdc_realn.bam 282378656 BAM chimeric harmonized CPTAC3 0976a85f-ed4f-4252-ac3f-981fad015e8f b7d4cc8e1149695c7a3d8c7c9b7b06b7 {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.RNA-Seq.chimeric.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.chimeric.gdc_realn.bam 107298106 BAM chimeric harmonized CPTAC3 354cf9f2-4de7-4654-8f7c-3b5de6c4c1f5 ea599a53aeda41e9aed3889d6eb14a0c {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.RNA-Seq.genomic.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.genomic.gdc_realn.bam 9236498318 BAM genomic harmonized CPTAC3 602095f5-f29c-4a35-8b38-80d49cc17617 1472278fb567426ca7cbfc87e9364c0e {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.RNA-Seq.genomic.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.genomic.gdc_realn.bam 9651914072 BAM genomic harmonized CPTAC3 5585b1f7-09cd-42c5-9578-a0fad70ff45d c249657aef1b2aa62c902b2e7a8869b9 {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.RNA-Seq.S6_L002_R1.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4290807357 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 5951182e-3ce1-4d4d-84b2-eb78eb0e0908 cc923261ceb1e03cef4f8c5c80917235 {"aliquot_tag": "ALQ_b5cda08", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.RNA-Seq.S6_L002_R2.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4872579534 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 23f45e4a-71ff-426b-80dd-7f5868be3ccc 7a47d37830d1cd2d54446948a357d5c7 {"aliquot_tag": "ALQ_b5cda08", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.RNA-Seq.S8_L007_R1.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R1_001.fastq.gz 4392988389 FASTQ S8_L007_R1 submitted_unaligned CPTAC3 b0f21b06-17fa-472d-bf5a-d1a189bfc5c0 9d777a70e1fe574df9a55423734b27fe {"aliquot_tag": "ALQ_cd106bdc", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.RNA-Seq.S8_L007_R2.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R2_001.fastq.gz 4925447728 FASTQ S8_L007_R2 submitted_unaligned CPTAC3 166ac5f0-39f7-4759-a536-41c0147bb70a c8730730b85130c333641fbd3d63a958 {"aliquot_tag": "ALQ_cd106bdc", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.RNA-Seq.transcriptome.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.transcriptome.gdc_realn.bam 10695601540 BAM transcriptome harmonized CPTAC3 ace8c0a0-800e-4a1a-9b3d-9ed830181f13 c1e21f55ce34178f8151e7451aa9de18 {"aliquot_tag": "ALQ_b5cda08", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.RNA-Seq.transcriptome.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.transcriptome.gdc_realn.bam 10375318535 BAM transcriptome harmonized CPTAC3 43818c5f-c4e3-4268-b0cc-8c9a38443eab 23a4543a54384afb28b1c909350f10d9 {"aliquot_tag": "ALQ_cd106bdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.WGS.A C3L-02891 LSCC WGS tissue_normal CPT0218310006 CPT0218310006.WholeGenome.RP-1303.bam 57004135378 BAM submitted_aligned CPTAC3 743a4792-55f4-4821-b2a6-e7aff024cdfe 5dbbcdc3e67e5dba9ce48597e2517dbd {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.WGS.A.hg38 C3L-02891 LSCC WGS tissue_normal CPT0218310006 a819c3d7-b052-46a5-8163-c30fab80758c_wgs_gdc_realn.bam 84441855341 BAM harmonized CPTAC3 2b354c84-de84-4bda-b5d5-63f0f81838b3 09424ab6043a46f60545c08a1b79a493 {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.WGS.N C3L-02891 LSCC WGS blood_normal CPT0219890002 CPT0219890002.WholeGenome.RP-1303.bam 63073165063 BAM submitted_aligned CPTAC3 674ba111-dd38-4298-bab5-a81ee98716b1 af6e12b4ef78b5cf789e003e8148c449 {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02891.WGS.N.hg38 C3L-02891 LSCC WGS blood_normal CPT0219890002 dc7a5978-8435-4a74-a321-9975d1b9db7f_wgs_gdc_realn.bam 90780849091 BAM harmonized CPTAC3 18cc4bc2-f7a7-4314-9b26-a1174489b4b5 b31a1ad7806ede67ff1b66dbf9d024a8 {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02891.WGS.T C3L-02891 LSCC WGS tumor CPT0218280006 CPT0218280006.WholeGenome.RP-1303.bam 68068032493 BAM submitted_aligned CPTAC3 e48d786a-4a0c-47a5-89cf-024d43c1190a 62acabdb5af42884998aa08132118dea {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.WGS.T.hg38 C3L-02891 LSCC WGS tumor CPT0218280006 b341203a-de92-4bb8-9749-ccb9721ec873_wgs_gdc_realn.bam 97892053925 BAM harmonized CPTAC3 78215c83-894a-4dca-a826-2361bd047771 fc1b9768866187f944d4331b927b50bf {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.WXS.A C3L-02891 LSCC WXS tissue_normal CPT0218310006 CPT0218310006.WholeExome.RP-1303.bam 29157834678 BAM submitted_aligned CPTAC3 e062da4e-3662-4bbc-a27a-b8008f551254 6d2ba230733c1fe104d261b2dc5cf166 {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.WXS.A.hg38 C3L-02891 LSCC WXS tissue_normal CPT0218310006 a819c3d7-b052-46a5-8163-c30fab80758c_wxs_gdc_realn.bam 40244674857 BAM harmonized CPTAC3 310a21b9-6605-4589-aa6f-29618b89c841 f54c2fc369c4d6175fbe051eb739694b {"aliquot_tag": "ALQ_9be3c799", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02891.WXS.N C3L-02891 LSCC WXS blood_normal CPT0219890002 CPT0219890002.WholeExome.RP-1303.bam 26451401673 BAM submitted_aligned CPTAC3 3fb78710-1162-446e-9e37-39fc72b70d18 b266458fdad42958200c725aca600fc7 {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02891.WXS.N.hg38 C3L-02891 LSCC WXS blood_normal CPT0219890002 dc7a5978-8435-4a74-a321-9975d1b9db7f_wxs_gdc_realn.bam 36466893765 BAM harmonized CPTAC3 c15eaede-f5db-4ac7-a092-a780a9644873 8cd00ae4e4907e709cbfb18a27c2b50d {"aliquot_tag": "ALQ_604eb336", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02891.WXS.T C3L-02891 LSCC WXS tumor CPT0218280006 CPT0218280006.WholeExome.RP-1303.bam 22215882390 BAM submitted_aligned CPTAC3 6b27dffb-75f4-45aa-86dc-1f39f5a2b6f5 75581ed2178feddae36419ffa4895139 {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02891.WXS.T.hg38 C3L-02891 LSCC WXS tumor CPT0218280006 b341203a-de92-4bb8-9749-ccb9721ec873_wxs_gdc_realn.bam 30646282965 BAM harmonized CPTAC3 6eda6841-b626-4429-8e88-d79952fc3648 4b8c613488504950e73e2ca43c96bfac {"aliquot_tag": "ALQ_5daf764d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.MethArray.Green.A C3L-02893 LUAD Methylation_Array tissue_normal CPT0197040006 203561620016_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 837c6ef9-0f96-4ec4-aa98-f7c56935b5c5 a7690e2154d9e0297143f35892fcef21 {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.MethArray.Green.T C3L-02893 LUAD Methylation_Array tumor CPT0197030006 203561450017_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b71d6bd8-d48e-4749-9529-b6fad785586e aa868d721053b06b36b929017e2427e7 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.MethArray.Red.A C3L-02893 LUAD Methylation_Array tissue_normal CPT0197040006 203561620016_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 a66dd6f6-eb19-4274-bd64-c792fe9a2821 a8716ed7390a0982deb3072eb55485e0 {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.MethArray.Red.T C3L-02893 LUAD Methylation_Array tumor CPT0197030006 203561450017_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 661c0e8c-6052-4c86-9497-4e0fe8bd4f61 33f877fbb6343df3289aeeb9ad042524 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.miRNA-Seq.A.hg38 C3L-02893 LUAD miRNA-Seq tissue_normal CPT0197040009 273a4b23-0d7b-40e8-9b78-243b48c2adf0_mirnaseq_gdc_realn.bam 265584575 BAM harmonized CPTAC3 79741339-4f59-4eeb-b9b0-8a4b3d33dfe7 2e398e3a592c9f4a0b4520ccd1fcce9d {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.miRNA-Seq.S10_L005_R1.T C3L-02893 LUAD miRNA-Seq tumor CPT0197030009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTTCC_S10_L005_R1_001.unaln.bam 201485904 BAM S10_L005_R1 submitted_unaligned CPTAC3 bb2849a7-2deb-4aed-a6b0-4c9dad4a4e05 8fe9530e9fc43f6ae99b6cecba09d17b {"aliquot_tag": "ALQ_eb28ac5f", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.miRNA-Seq.S26_L007_R1.A C3L-02893 LUAD miRNA-Seq tissue_normal CPT0197040009 190712_UNC32-K00270_0192_BH7HL3BBXY_TTAGGC_S26_L007_R1_001.unaln.bam 234450049 BAM S26_L007_R1 submitted_unaligned CPTAC3 3dfba283-ed07-47dc-89e2-f048d3cc8183 0b59e23cd02959587c3c4e655e044a0a {"aliquot_tag": "ALQ_5908704f", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.miRNA-Seq.T.hg38 C3L-02893 LUAD miRNA-Seq tumor CPT0197030009 80f94f24-6539-4048-ba7e-c60149ac7579_mirnaseq_gdc_realn.bam 220281377 BAM harmonized CPTAC3 2fd1afbc-3365-4184-a7b9-f44788b23fa3 efcf5f8ac598aeba4fb851297f618d2e {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.RNA-Seq.chimeric.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.chimeric.gdc_realn.bam 36319593 BAM chimeric harmonized CPTAC3 6a90eab0-7955-46cd-a94c-2a2a78f76ec7 a91869ba5184fe76463b257f4b8d7ec9 {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.RNA-Seq.chimeric.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.chimeric.gdc_realn.bam 38274422 BAM chimeric harmonized CPTAC3 f76634b4-e2b2-4d5a-9bf1-588080b4ba37 b9b83df2044d2fbc7961f98fd7960846 {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.RNA-Seq.genomic.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.genomic.gdc_realn.bam 11799065200 BAM genomic harmonized CPTAC3 97d33e73-e5b7-43f1-a507-4f652e3d9aa7 330a11a1fda80711019d9d52f37b1a05 {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.RNA-Seq.genomic.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.genomic.gdc_realn.bam 12114449049 BAM genomic harmonized CPTAC3 1724b857-e426-4831-8427-9180ef0f03a1 75a15d0fcf6525d2ac34af1c5b31b28a {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.RNA-Seq.S11_L003_R1.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 4192935120 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 ad7c89e3-6405-4975-87c7-d37f2aa9afad 3faa299ef8feba841a663b47df1d6e5f {"aliquot_tag": "ALQ_eb28ac5f", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.RNA-Seq.S11_L003_R2.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 4692968950 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 91ec17ab-f883-4958-b539-aa19e60d5d4c 091363e704beeb95b19b0155a5333d3e {"aliquot_tag": "ALQ_eb28ac5f", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.RNA-Seq.S32_L008_R1.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R1_001.fastq.gz 3681804501 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 27cb8b36-6d3a-4705-b147-54505536dae9 09fe8e4caf7efcdcc0358343d440f400 {"aliquot_tag": "ALQ_5908704f", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.RNA-Seq.S32_L008_R2.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R2_001.fastq.gz 4034277471 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 e42baa71-96d7-41c4-ab72-b8b5367127ed 6c87b4e37ec2fa82d085f0c259a97de7 {"aliquot_tag": "ALQ_5908704f", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.RNA-Seq.transcriptome.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.transcriptome.gdc_realn.bam 8041324250 BAM transcriptome harmonized CPTAC3 aeaca61b-1550-4d72-af24-bb3ae42a5b9f 5cb9b62995fa88c679ab3bfcd8ba6eb4 {"aliquot_tag": "ALQ_5908704f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.RNA-Seq.transcriptome.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.transcriptome.gdc_realn.bam 9500830299 BAM transcriptome harmonized CPTAC3 2ef3810e-0f6f-4fc5-8371-7a0bba2ad3e9 07a00379c670c0dcc71f2410030638c7 {"aliquot_tag": "ALQ_eb28ac5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.WGS.N C3L-02893 LUAD WGS blood_normal CPT0197820002 CPT0197820002.WholeGenome.RP-1303.bam 76283892427 BAM submitted_aligned CPTAC3 ebe7bc8d-2c60-4b81-89b5-a96617b1fa2a cb19d17e57620afc5559b06d028cca41 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02893.WGS.N.hg38 C3L-02893 LUAD WGS blood_normal CPT0197820002 82551fd4-96fd-4a18-9f23-2564f03cfb37_wgs_gdc_realn.bam 111472479929 BAM harmonized CPTAC3 a124bff4-c42b-4663-9d6d-ec17825afdcf 649deccfd2896fb2dba95d04da57a4d5 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02893.WGS.T C3L-02893 LUAD WGS tumor CPT0197030006 CPT0197030006.WholeGenome.RP-1303.bam 58952130523 BAM submitted_aligned CPTAC3 4c37f9fc-f477-4444-bf08-87699214903b 0292f6cbd0020e3d2602a3cb827b0504 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.WGS.T.hg38 C3L-02893 LUAD WGS tumor CPT0197030006 52cb658d-2bc0-4319-9868-58221c5811e2_wgs_gdc_realn.bam 85514404535 BAM harmonized CPTAC3 e86bbe40-eaf8-4331-9a0d-fa66a3fc0afe ccf9344cf0096bf2e0769325c9df9d4e {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.WXS.A C3L-02893 LUAD WXS tissue_normal CPT0197040006 CPT0197040006.WholeExome.RP-1303.bam 22095158520 BAM submitted_aligned CPTAC3 fc316dcf-c53a-43a8-aa38-a1a79c4f4691 d1f5c71d639faa7b8ef51ca8c7a35a7c {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.WXS.A.hg38 C3L-02893 LUAD WXS tissue_normal CPT0197040006 e31d95da-7853-4d6b-96dd-bc411049691d_wxs_gdc_realn.bam 30583756872 BAM harmonized CPTAC3 26a1285b-0312-40cd-b83e-536e93ea43e7 01f113e98ce5b64cc311204ad20f02d3 {"aliquot_tag": "ALQ_c9b76dde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02893.WXS.N C3L-02893 LUAD WXS blood_normal CPT0197820002 CPT0197820002.WholeExome.RP-1303.bam 28550477824 BAM submitted_aligned CPTAC3 9d02869d-2de2-49bd-9f3c-a901a2a495d5 bc892ff7b7266167dff882d560f95375 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02893.WXS.N.hg38 C3L-02893 LUAD WXS blood_normal CPT0197820002 82551fd4-96fd-4a18-9f23-2564f03cfb37_wxs_gdc_realn.bam 39194336953 BAM harmonized CPTAC3 58f5c055-22a9-4811-b0cd-ac8a51d7f443 9c64d452490eaf8db073972362a8c255 {"aliquot_tag": "ALQ_adc9de0a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02893.WXS.T C3L-02893 LUAD WXS tumor CPT0197030006 CPT0197030006.WholeExome.RP-1303.bam 23173080098 BAM submitted_aligned CPTAC3 30397ca2-7d91-4093-b3dd-ca9117c601ba 207b48aad48892b89d2dc7ba89fd2059 {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02893.WXS.T.hg38 C3L-02893 LUAD WXS tumor CPT0197030006 52cb658d-2bc0-4319-9868-58221c5811e2_wxs_gdc_realn.bam 32239354582 BAM harmonized CPTAC3 b1fa048c-1d8c-458e-93f7-a5b356dd1284 eb018f1475df39f910470276bab433ae {"aliquot_tag": "ALQ_7b97b1ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02894.MethArray.Green.T C3L-02894 UCEC Methylation_Array tumor CPT0196790007 203561450100_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1baa6a7b-ea29-45d1-81b5-91c8fd02658a 65683dbf879d29410c159158de1d4d1e {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.MethArray.Red.T C3L-02894 UCEC Methylation_Array tumor CPT0196790007 203561450100_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 66dd59fc-ffec-44b4-a40e-f3b4daa3ae19 875736a4574dc5e2a468f1d154b930b3 {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.miRNA-Seq.S22_L004_R1.T C3L-02894 UCEC miRNA-Seq tumor CPT0196790010 190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L004_R1_001.unaln.bam 150901424 BAM S22_L004_R1 submitted_unaligned CPTAC3 fe3131b9-7f71-479d-8ca7-eb9c9a3d205e 12e613492a4588fb83960a59e9bc962f {"aliquot_tag": "ALQ_7a2d0617", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.miRNA-Seq.T.hg38 C3L-02894 UCEC miRNA-Seq tumor CPT0196790010 8e3b7a7b-46ac-49fc-9483-6cd433a9035c_mirnaseq_gdc_realn.bam 172933657 BAM harmonized CPTAC3 9886acbe-1991-4e76-9170-81ec13498d84 fb25def2e9c0c46d5afc975c7fc7d117 {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.chimeric.gdc_realn.bam 41743867 BAM chimeric harmonized CPTAC3 2768da46-3068-4841-8ba5-00d667372572 9f5bd964c40b0feb40cd4f7a509cc323 {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.chimeric.gdc_realn.bam 182318624 BAM chimeric harmonized CPTAC3 0efad8be-7bd2-4c22-a93a-4b1614ca2331 46cb153570b147346c3dcd4a39965f76 {"aliquot_tag": "ALQ_dc250951", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.chimeric.gdc_realn.bam 278995891 BAM chimeric harmonized CPTAC3 fb8ca07a-1222-47a5-b16e-d6d312e36df5 afd4821339a50337badcbc83a37946da {"aliquot_tag": "ALQ_322b687d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.genomic.gdc_realn.bam 8814091543 BAM genomic harmonized CPTAC3 febfabba-2bf6-4834-8a40-39745fea9e16 f4840ed201713251713c07f9abfc81f7 {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.genomic.gdc_realn.bam 9400060395 BAM genomic harmonized CPTAC3 00a4bfc6-9600-49d5-9206-b99cbb1cc784 c6d069ca51bc77489bf6e01e691d5878 {"aliquot_tag": "ALQ_dc250951", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.genomic.gdc_realn.bam 13306451306 BAM genomic harmonized CPTAC3 0bbde467-7463-4796-9e00-10af0573e2f5 b4a03bfc6a5d0bad3b57d8a199d80323 {"aliquot_tag": "ALQ_322b687d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.S18_L005_R1.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 4192440536 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 c03f6fe2-58c2-41d6-b026-4446e8439f88 84b0e6be794705bdb4d0c26bd8ace9ae {"aliquot_tag": "ALQ_7a2d0617", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.S18_L005_R2.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4741578598 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 3b648a60-c5d5-454e-92c1-c1e23588fff3 2dc404f9513209d38bfbe02a36c7b665 {"aliquot_tag": "ALQ_7a2d0617", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.S1_R1.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R1_001.fastq.gz 5694982378 FASTQ S1_R1 submitted_unaligned CPTAC3 6f34cc4c-5d4a-4901-a9a1-3b29a8f762dd 6b381ee7206ed9f33c66d6f44c87e081 {"aliquot_tag": "ALQ_dc250951", "sample": "S1", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.S1_R2.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R2_001.fastq.gz 5897358182 FASTQ S1_R2 submitted_unaligned CPTAC3 abf9cdf8-9a49-471d-b5c1-50878e1cfa4e d1da2bb0dfdd8e55d50dc52c1406f694 {"aliquot_tag": "ALQ_dc250951", "sample": "S1", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.S71_R1.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R1_001.fastq.gz 8109773430 FASTQ S71_R1 submitted_unaligned CPTAC3 50594872-be0d-4dc4-8991-e4152860c955 0f84fa4216c3df8993aac1d8b5b21c63 {"aliquot_tag": "ALQ_322b687d", "sample": "S71", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.S71_R2.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R2_001.fastq.gz 8435403023 FASTQ S71_R2 submitted_unaligned CPTAC3 84951194-9d7d-422e-8572-c27d05daa703 32d0e6b3d16d62d0f5924002d04870ea {"aliquot_tag": "ALQ_322b687d", "sample": "S71", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.transcriptome.gdc_realn.bam 10129372511 BAM transcriptome harmonized CPTAC3 b9978377-ddc1-41db-945a-796d893ea2bb 30feab158efbdb2cd1ccd79d2e39be2c {"aliquot_tag": "ALQ_7a2d0617", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.transcriptome.gdc_realn.bam 5372786742 BAM transcriptome harmonized CPTAC3 204891be-43eb-41fe-b25e-c077ad07e3f6 33ee8fbaafef433a6b430135606f2acc {"aliquot_tag": "ALQ_dc250951", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.transcriptome.gdc_realn.bam 7783565384 BAM transcriptome harmonized CPTAC3 9f09415f-bb9c-4f47-952b-58796814ed44 2ec5c12b3fdec8e7a7a5990dc498c9a5 {"aliquot_tag": "ALQ_322b687d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.WGS.N C3L-02894 UCEC WGS blood_normal CPT0197780002 CPT0197780002.WholeGenome.RP-1303.bam 68346330482 BAM submitted_aligned CPTAC3 2aad0b90-79ec-45bf-9905-a9473668bf6c afda16e239f52a157044096025f75cb2 {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02894.WGS.N.hg38 C3L-02894 UCEC WGS blood_normal CPT0197780002 08fe61b1-a4ad-4176-bb16-0c9bdfa98c13_wgs_gdc_realn.bam 102216615296 BAM harmonized CPTAC3 68919e37-7f72-4142-9056-d25bd6aae103 fbb48011c450a85d074427af59f6cb04 {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02894.WGS.T C3L-02894 UCEC WGS tumor CPT0196790007 CPT0196790007.WholeGenome.RP-1303.bam 78782532082 BAM submitted_aligned CPTAC3 8a75b1dd-21f7-4d45-aea5-391a3fb187a2 fc07e88060882c3c5a5bfb827bd71b72 {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.WGS.T.hg38 C3L-02894 UCEC WGS tumor CPT0196790007 c017f8ce-1f65-463e-9c1b-c045474baf34_wgs_gdc_realn.bam 116804697873 BAM harmonized CPTAC3 c1214a82-ee8f-4729-92d9-de3e20d4e534 672b51900bdce8796430b54940ee27fa {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.WXS.N C3L-02894 UCEC WXS blood_normal CPT0197780002 CPT0197780002.WholeExome.RP-1303.bam 25922356667 BAM submitted_aligned CPTAC3 6e3c7bd1-9769-4822-816d-1c88288cbc69 ecadc3317a9892367024a5ed67319283 {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02894.WXS.N.hg38 C3L-02894 UCEC WXS blood_normal CPT0197780002 08fe61b1-a4ad-4176-bb16-0c9bdfa98c13_wxs_gdc_realn.bam 35652223687 BAM harmonized CPTAC3 abd791ba-ff60-4e67-9dee-55b77f3028ba d320fa2958ffd87fd4d578051718f6ab {"aliquot_tag": "ALQ_162f747e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02894.WXS.T C3L-02894 UCEC WXS tumor CPT0196790007 CPT0196790007.WholeExome.RP-1303.bam 24892676675 BAM submitted_aligned CPTAC3 032babf0-8cf7-4341-a5b6-efbff1c3b367 1f493a075a0548ddd581c87aedcb850e {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02894.WXS.T.hg38 C3L-02894 UCEC WXS tumor CPT0196790007 c017f8ce-1f65-463e-9c1b-c045474baf34_wxs_gdc_realn.bam 34013877396 BAM harmonized CPTAC3 07d02b27-c0c2-4318-ad8e-ba01a9e80823 775bd43baecef4f0c7dc65e709b75166 {"aliquot_tag": "ALQ_fd52a2f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02897.miRNA-Seq.S13_L006_R1.T C3L-02897 PDA miRNA-Seq tumor CPT0217700010 190712_UNC32-K00270_0192_BH7HL3BBXY_CGGAAT_S13_L006_R1_001.unaln.bam 173523011 BAM S13_L006_R1 submitted_unaligned CPTAC3 57e90727-1ce1-4d1d-8844-1d48d3c4d33e 359d0204a18cc709b51b6bf2cfe8d1c0 {"aliquot_tag": "ALQ_3b2248a2", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.miRNA-Seq.T.hg38 C3L-02897 PDA miRNA-Seq tumor CPT0217700010 4b763714-284e-4291-8a50-ac1a9f7de21b_mirnaseq_gdc_realn.bam 196554601 BAM harmonized CPTAC3 53a4d217-2569-47e1-87a7-6caafcccba63 9250b2625051218cb6b9b841b3908f1c {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.RNA-Seq.chimeric.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.chimeric.gdc_realn.bam 36810848 BAM chimeric harmonized CPTAC3 536406d6-edad-474d-bbb7-6cc6c30b16e4 9bcdc9320e106a29ac869c1773fc56a6 {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.RNA-Seq.genomic.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.genomic.gdc_realn.bam 10234141614 BAM genomic harmonized CPTAC3 02897562-5bc3-4321-967c-8be945003df6 e7ad832353804db5bd6261ae879ddecf {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.RNA-Seq.S8_L003_R1.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R1_001.fastq.gz 4341150721 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 629ce841-44b4-46c3-a0eb-43ac05005930 18752cfdf53add4d53eddda4ba0c4eba {"aliquot_tag": "ALQ_3b2248a2", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.RNA-Seq.S8_L003_R2.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R2_001.fastq.gz 4549041539 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 99f87dd5-26dd-40e8-aa30-88673abbab58 85709ee411184d41b21ec192bd99ac36 {"aliquot_tag": "ALQ_3b2248a2", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.RNA-Seq.transcriptome.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.transcriptome.gdc_realn.bam 12498821711 BAM transcriptome harmonized CPTAC3 2929e642-4426-4493-80a5-a8de73ed0925 fa807e08372777f472edc769c6cf73b1 {"aliquot_tag": "ALQ_3b2248a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.WGS.N C3L-02897 PDA WGS blood_normal CPT0219810002 CPT0219810002.WholeGenome.RP-1303.bam 72888767770 BAM submitted_aligned CPTAC3 ac647f2e-5a8c-4770-9e33-eb8a357a5533 54d1e92e420b706bcf387e32abb17207 {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02897.WGS.N.hg38 C3L-02897 PDA WGS blood_normal CPT0219810002 5884a7e5-1c56-49c7-aece-8650d523d6f7_wgs_gdc_realn.bam 106274527377 BAM harmonized CPTAC3 45104f69-10c8-4774-bb5a-0e7aa70ecec8 d1a7362cf8f3c8ffc6adab1d16a7f9fb {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02897.WGS.T C3L-02897 PDA WGS tumor CPT0217700007 CPT0217700007.WholeGenome.RP-1303.bam 67039044890 BAM submitted_aligned CPTAC3 e1af413b-c1c9-4b49-ad2b-c15f50a33f25 fce33aed2019c7c3c85e418c62244c55 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.WGS.T.hg38 C3L-02897 PDA WGS tumor CPT0217700007 147315d9-f032-40de-b5b9-a1672fa29113_wgs_gdc_realn.bam 100640487110 BAM harmonized CPTAC3 d677b74b-1368-439f-b67c-76f7c821921d 8c2a923188fa92b4d39fcb3036ba0114 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.WXS.N C3L-02897 PDA WXS blood_normal CPT0219810002 CPT0219810002.WholeExome.RP-1303.bam 31870349184 BAM submitted_aligned CPTAC3 89b569ce-4d36-420c-b1ab-941158792d59 535e035c75c1499c705192d7603bf323 {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02897.WXS.N.hg38 C3L-02897 PDA WXS blood_normal CPT0219810002 5884a7e5-1c56-49c7-aece-8650d523d6f7_wxs_gdc_realn.bam 44183817987 BAM harmonized CPTAC3 09a6cd39-77f2-4d56-8877-11c05369e891 eb1dfb71adb3cebfb05e5b8e26c725a0 {"aliquot_tag": "ALQ_503ef8f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02897.WXS.T C3L-02897 PDA WXS tumor CPT0217700007 CPT0217700007.WholeExome.RP-1303.bam 22104816810 BAM submitted_aligned CPTAC3 94f81bd9-3060-4c95-b8eb-5262c86dfd3a d3499620e5e4097bee46a4248085f351 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02897.WXS.T.hg38 C3L-02897 PDA WXS tumor CPT0217700007 147315d9-f032-40de-b5b9-a1672fa29113_wxs_gdc_realn.bam 30207586921 BAM harmonized CPTAC3 fdac36b6-d7f6-4477-8b06-31fdc3030d46 65c5253101c562861203657a77362286 {"aliquot_tag": "ALQ_bc5dec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.MethArray.Green.A C3L-02899 PDA Methylation_Array tissue_normal CPT0197440007 203561450046_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4e88667b-d205-4eaf-a717-bde6d09d151b 40fe83fcbc7d9318d38fecd220e5999b {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.MethArray.Red.A C3L-02899 PDA Methylation_Array tissue_normal CPT0197440007 203561450046_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 c1d76bc8-d0c8-45b1-8384-ee605dfccabd 8a47d9719e49b91e37293aaa3cfd11a9 {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.miRNA-Seq.A.hg38 C3L-02899 PDA miRNA-Seq tissue_normal CPT0197440010 7775143e-2d32-4967-9eb0-81229b088238_mirnaseq_gdc_realn.bam 333995918 BAM harmonized CPTAC3 298bce26-73c6-4f22-87c2-31a6af566cc1 93a0b16bf1e466e21f3f314d2aaa574c {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.miRNA-Seq.S35_L002_R1.A C3L-02899 PDA miRNA-Seq tissue_normal CPT0197440010 190813_UNC32-K00270_0196_AH5MCWBBXY_GCCAAT_S35_L002_R1_001.unaln.bam 295752248 BAM S35_L002_R1 submitted_unaligned CPTAC3 b88dc1b1-eddc-4c55-9aff-d5c094bf3950 9617d9823d6453af8a950d63f2e07534 {"aliquot_tag": "ALQ_a25ebbbc", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.miRNA-Seq.S3_L006_R1.T C3L-02899 PDA miRNA-Seq tumor CPT0197420010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATTCCT_S3_L006_R1_001.unaln.bam 183927635 BAM S3_L006_R1 submitted_unaligned CPTAC3 7a16fc15-4e40-4571-ac1c-10c16020a475 9c4f0abbe2ecc3e14744e7c6ae1719b5 {"aliquot_tag": "ALQ_2d1e4e1c", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.miRNA-Seq.T.hg38 C3L-02899 PDA miRNA-Seq tumor CPT0197420010 538b1edf-ed98-408e-a04a-325816db905d_mirnaseq_gdc_realn.bam 210166735 BAM harmonized CPTAC3 aada5e60-54eb-4ba7-989e-e1d7f58a740e b0543a2d2c16a15399236bab6d138c31 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.RNA-Seq.chimeric.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.chimeric.gdc_realn.bam 36292961 BAM chimeric harmonized CPTAC3 133aba17-d8c0-4809-a2ef-00a99e0c535c 904f3e0f81cb806624579b99154f3ea2 {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.RNA-Seq.chimeric.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.chimeric.gdc_realn.bam 44836679 BAM chimeric harmonized CPTAC3 76fafad4-c728-4fc5-be0f-2ff6dbdf02d4 3d76098e2a7237b7dbf76ebb96388a51 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.RNA-Seq.genomic.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.genomic.gdc_realn.bam 7721879689 BAM genomic harmonized CPTAC3 2805f649-a644-40f8-8338-4152e87ac186 1f2f82c442468f2534d86f3f34723000 {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.RNA-Seq.genomic.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.genomic.gdc_realn.bam 11762843474 BAM genomic harmonized CPTAC3 1edb2b1e-d7e0-4482-a5a5-5c634957d266 9f645bc145a91c8695bfb498b1ce73c4 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.RNA-Seq.S28_L007_R1.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R1_001.fastq.gz 4407488559 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 0360979a-14eb-4e86-9e58-f21bdd2a772b fd8f54360a2ac4480233b5758f4fc3ae {"aliquot_tag": "ALQ_2d1e4e1c", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.RNA-Seq.S28_L007_R2.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R2_001.fastq.gz 4901697953 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 e71c4035-8b43-4fc3-81ed-4f367fd259ee c5dcc23405a4b41c461ded2c68f5ebd0 {"aliquot_tag": "ALQ_2d1e4e1c", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.RNA-Seq.S8_L002_R1.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R1_001.fastq.gz 3949078775 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 0cd72a75-dc9b-47b8-aeaa-0920e311135a 1de99857f7969ad3f61a5413f1a3cd46 {"aliquot_tag": "ALQ_a25ebbbc", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.RNA-Seq.S8_L002_R2.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R2_001.fastq.gz 4058775194 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 7c3252a4-ed1f-4eb3-9648-6ca66565fb6a 40977a392c4c4efd9a40b8f2db268c8a {"aliquot_tag": "ALQ_a25ebbbc", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.RNA-Seq.transcriptome.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.transcriptome.gdc_realn.bam 10052771077 BAM transcriptome harmonized CPTAC3 b3002632-ff46-4a25-8201-a86a215f29cd 21d0e0db64f985abf5548c4ad525728d {"aliquot_tag": "ALQ_a25ebbbc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.RNA-Seq.transcriptome.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.transcriptome.gdc_realn.bam 11550240121 BAM transcriptome harmonized CPTAC3 7affe9b2-9037-43c1-8f6b-d4de5f851f04 4ba953acff68a61492948d96fb8bb6e1 {"aliquot_tag": "ALQ_2d1e4e1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.Targeted.T C3L-02899 PDA Targeted_Sequencing tumor CPT0197420007 CPT0197420007.CustomSelection.RP-1303.PDO-18786.bam 6166110820 BAM submitted_aligned CPTAC3 2425ef6e-f824-4c3b-bd7c-cf4d2c2fe3c5 ea1e2ee069b702d46c1a73bf8883331d {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.Targeted.T.hg38 C3L-02899 PDA Targeted_Sequencing tumor CPT0197420007 e6eea8e8-9822-4b69-bba2-6d8db475bf86_targetedsequencing_gdc_realn.bam 8537214150 BAM harmonized CPTAC3 f6ac7a16-2f98-4565-ba3e-3db92cc7c6ac 0b0406ca4df08c41f247e3e6538eea6a {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.WGS.N C3L-02899 PDA WGS blood_normal CPT0199150002 CPT0199150002.WholeGenome.RP-1303.bam 80146903329 BAM submitted_aligned CPTAC3 3c1e8a34-1aed-48e0-aeaa-96f31c638c96 9b442d8ba616a0854c33560a52e6195d {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02899.WGS.N.hg38 C3L-02899 PDA WGS blood_normal CPT0199150002 182d8a2f-9eb2-43fc-9c77-a08345542b7c_wgs_gdc_realn.bam 117038576311 BAM harmonized CPTAC3 7acea6e2-73b4-4889-9b47-7f1010a1e836 c9046e4f001c07c7dd8deb0eb3e9a603 {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02899.WGS.T C3L-02899 PDA WGS tumor CPT0197420007 CPT0197420007.WholeGenome.RP-1303.bam 65733445430 BAM submitted_aligned CPTAC3 4d66ed15-f0e8-401f-9123-fc67b870d9af e91d6fe734d98aecadf8bc09d7d4de46 {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.WGS.T.hg38 C3L-02899 PDA WGS tumor CPT0197420007 e6eea8e8-9822-4b69-bba2-6d8db475bf86_wgs_gdc_realn.bam 96384088129 BAM harmonized CPTAC3 fd0abb1c-8e88-4f76-b767-c8292ca82f55 ee45dbf92dd493085b1c376b0c18e9a7 {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.WXS.A C3L-02899 PDA WXS tissue_normal CPT0197440007 CPT0197440007.WholeExome.RP-1303.bam 28475275478 BAM submitted_aligned CPTAC3 96c8cb87-89d8-4ca0-87d0-f1649b574cd5 794c16ba931edc15909bd6da2d311862 {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.WXS.A.hg38 C3L-02899 PDA WXS tissue_normal CPT0197440007 d3e40f3c-2a50-4f0b-9247-ce6134c52c00_wxs_gdc_realn.bam 39374350484 BAM harmonized CPTAC3 bb7b4a14-9ee0-46ed-9408-e9f6cf91ace5 5b5e3c09fa1be11c5f0053983ed9375d {"aliquot_tag": "ALQ_25211f5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02899.WXS.N C3L-02899 PDA WXS blood_normal CPT0199150002 CPT0199150002.WholeExome.RP-1303.bam 34119535700 BAM submitted_aligned CPTAC3 c70a5c5d-896b-49e7-9c70-9ba8f7d2ec81 b2b43f976a06466d4f006df6c579ca28 {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02899.WXS.N.hg38 C3L-02899 PDA WXS blood_normal CPT0199150002 182d8a2f-9eb2-43fc-9c77-a08345542b7c_wxs_gdc_realn.bam 47132823183 BAM harmonized CPTAC3 77728f8c-fe5d-42b7-8d8c-ccb36208cbe4 5dbf9223ec5ab66510dc365903a70d67 {"aliquot_tag": "ALQ_68d9288f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02899.WXS.T C3L-02899 PDA WXS tumor CPT0197420007 CPT0197420007.WholeExome.RP-1303.bam 30533239221 BAM submitted_aligned CPTAC3 bb4ff56f-1b50-49bb-9d1b-a85273361ca0 d5f2f45f2f18b4e7f77eaa0f335f885e {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02899.WXS.T.hg38 C3L-02899 PDA WXS tumor CPT0197420007 e6eea8e8-9822-4b69-bba2-6d8db475bf86_wxs_gdc_realn.bam 42795907897 BAM harmonized CPTAC3 187f43cf-2d08-420c-b9f5-38fbff8c91e2 03a6e43978fa716f105fb9b550bb91ae {"aliquot_tag": "ALQ_aa61eafe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.MethArray.Green.T C3L-02900 GBM Methylation_Array tumor CPT0218670006 203219650071_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 217b94af-0969-492a-8ad1-98373c583823 9a7182f21b42e65c14ef728d8b9b5047 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.MethArray.Red.T C3L-02900 GBM Methylation_Array tumor CPT0218670006 203219650071_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 52ad2a04-e59e-446d-a8d5-a468dbbcb0aa c25cec41bbe9b915e364b66e81540465 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.miRNA-Seq.S18_L008_R1.T C3L-02900 GBM miRNA-Seq tumor CPT0218670009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L008_R1_001.unaln.bam 270496443 BAM S18_L008_R1 submitted_unaligned CPTAC3 aa55b363-37b3-4110-890a-29dd4cc28072 0ef86a065d5806b5c122fcba20fa5351 {"aliquot_tag": "ALQ_d4d1be1b", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.miRNA-Seq.T.hg38 C3L-02900 GBM miRNA-Seq tumor CPT0218670009 af9de5cd-08fe-4d2a-a18f-714b19a602df_mirnaseq_gdc_realn.bam 308545988 BAM harmonized CPTAC3 fd2814f0-cac8-4639-b82e-c61fe5aadee4 280a751faf272ab84f519553685afdbb {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.RNA-Seq.chimeric.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.chimeric.gdc_realn.bam 38940989 BAM chimeric harmonized CPTAC3 9ec8319e-d82d-45ff-94ef-1ac9b02615eb 4e150fe68b2f0e035e402a64f891540c {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.RNA-Seq.genomic.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.genomic.gdc_realn.bam 8316235781 BAM genomic harmonized CPTAC3 84b8113b-0daf-4807-a4f1-fb03d3186105 0b683b448d87042b066c482b4c6ef5b5 {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.RNA-Seq.S5_L006_R1.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R1_001.fastq.gz 3747926637 FASTQ S5_L006_R1 submitted_unaligned CPTAC3 ce9d64d7-7245-43fc-b9c3-83b8099af70c bf16f687b2195dbb500992a635232521 {"aliquot_tag": "ALQ_d4d1be1b", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.RNA-Seq.S5_L006_R2.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R2_001.fastq.gz 3922660448 FASTQ S5_L006_R2 submitted_unaligned CPTAC3 ed8d7108-a0fc-4c05-88c7-b36c2a46344f 80008753978f47fe2412e7a11b66f800 {"aliquot_tag": "ALQ_d4d1be1b", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.RNA-Seq.transcriptome.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.transcriptome.gdc_realn.bam 9708338164 BAM transcriptome harmonized CPTAC3 065ddded-5b27-4ab6-b379-8bb5247aa601 c3cccabe45dc037a0d383da8d2eaab54 {"aliquot_tag": "ALQ_d4d1be1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.WGS.N C3L-02900 GBM WGS blood_normal CPT0219910002 CPT0219910002.WholeGenome.RP-1303.bam 65972536465 BAM submitted_aligned CPTAC3 57efdbaa-b7f4-4402-8a43-11053f1b6b91 3a77e3788e1ba38ca0808692df38fd2c {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02900.WGS.N.hg38 C3L-02900 GBM WGS blood_normal CPT0219910002 6264f251-942e-4eb8-a787-58c3a28a6d66_wgs_gdc_realn.bam 95457873554 BAM harmonized CPTAC3 6ac20d11-64f1-4a61-9d85-5b7463206ccd 3713984b72195fac1bb2a9f7c19afaf3 {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02900.WGS.T C3L-02900 GBM WGS tumor CPT0218670006 CPT0218670006.WholeGenome.RP-1303.bam 64537343313 BAM submitted_aligned CPTAC3 a7fd2377-4d75-4538-9da4-f6e11de7edf7 47cb9c020094f8bb15661b1779669e26 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.WGS.T.hg38 C3L-02900 GBM WGS tumor CPT0218670006 31973fc9-0507-456d-be4a-1a696ea3cf34_wgs_gdc_realn.bam 94007884048 BAM harmonized CPTAC3 abca7dea-8322-4871-b75c-51642cccd475 a06bcef1b29b81bcd0787e1a152b037e {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.WXS.N C3L-02900 GBM WXS blood_normal CPT0219910002 CPT0219910002.WholeExome.RP-1303.bam 23770184168 BAM submitted_aligned CPTAC3 61deac03-1e86-452f-b3d8-3fb09b54e40f 069bdc5c71889e509e0db1486bcd311e {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02900.WXS.N.hg38 C3L-02900 GBM WXS blood_normal CPT0219910002 6264f251-942e-4eb8-a787-58c3a28a6d66_wxs_gdc_realn.bam 32458431549 BAM harmonized CPTAC3 d3bf35f7-29fa-4fb0-9930-9c858b616338 49c7852feeaae03ccec3c5e098aad28c {"aliquot_tag": "ALQ_9b622b52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02900.WXS.T C3L-02900 GBM WXS tumor CPT0218670006 CPT0218670006.WholeExome.RP-1303.bam 20935138758 BAM submitted_aligned CPTAC3 27b62d6d-444b-4dee-9afd-eacb6a77ea09 42bebc1d8a0630432516878547e4abf3 {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02900.WXS.T.hg38 C3L-02900 GBM WXS tumor CPT0218670006 31973fc9-0507-456d-be4a-1a696ea3cf34_wxs_gdc_realn.bam 29349254639 BAM harmonized CPTAC3 be8dfbc7-4022-4180-a77a-7098bfe6a03f 476827cb1988d1eb8a91b56571a28aad {"aliquot_tag": "ALQ_446ea38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.MethArray.Green.A C3L-02951 LSCC Methylation_Array tissue_normal CPT0197170009 203219650169_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0cfbc8be-827c-41d7-946d-1bd831fc516e c0c7ebe15fbd7d427a9320bef27bc928 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.MethArray.Green.T C3L-02951 LSCC Methylation_Array tumor CPT0197150009 203219720176_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 14286119-fa46-421e-8a72-869ea616dc51 643dedbc70849a4f5acd024bca40d67b {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.MethArray.Red.A C3L-02951 LSCC Methylation_Array tissue_normal CPT0197170009 203219650169_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 846137cd-1baa-4e72-ba00-bdebc0e18850 97cf7b4f3cf43e0507ee770aa9696e6b {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.MethArray.Red.T C3L-02951 LSCC Methylation_Array tumor CPT0197150009 203219720176_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 4eca88bf-4d14-406d-9c14-440ee9e6b792 7f0e2972ac12bdaf651113345273adc4 {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.miRNA-Seq.A.hg38 C3L-02951 LSCC miRNA-Seq tissue_normal CPT0197170006 d885eae0-6714-4ca3-9cff-bef883ea6b1c_mirnaseq_gdc_realn.bam 371308775 BAM harmonized CPTAC3 fa01460d-66b6-407f-a62f-6d14a8949140 1c22959e877c271c1d655f09c03e0846 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.miRNA-Seq.S10_L007_R1.A C3L-02951 LSCC miRNA-Seq tissue_normal CPT0197170006 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L007_R1_001.unaln.bam 329764146 BAM S10_L007_R1 submitted_unaligned CPTAC3 a442a54c-fc57-41ee-aef2-926600134864 858c84d2f1d8ebbfa3528aadcc0faccf {"aliquot_tag": "ALQ_454bc4ab", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.miRNA-Seq.S21_L003_R1.T C3L-02951 LSCC miRNA-Seq tumor CPT0197150006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTTTCG_S21_L003_R1_001.unaln.bam 129513063 BAM S21_L003_R1 submitted_unaligned CPTAC3 1cd59c92-95fb-4c2f-8e26-66a2f5222be8 57508054e79e584fa281127bfbbb87d0 {"aliquot_tag": "ALQ_3f8b97cb", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.miRNA-Seq.T.hg38 C3L-02951 LSCC miRNA-Seq tumor CPT0197150006 72985909-0550-430a-a8c1-4b473afde62b_mirnaseq_gdc_realn.bam 147626148 BAM harmonized CPTAC3 99af2f35-2b00-4291-8bfd-8dc3da0ba8f1 b61e6f77778d95bb37818c2977b11d2a {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.RNA-Seq.chimeric.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.chimeric.gdc_realn.bam 38744954 BAM chimeric harmonized CPTAC3 e42e0e24-9dfb-4ab3-8e7a-c0fb69a11166 624a49084e6c29dcc37cab4bd408d690 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.RNA-Seq.chimeric.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.chimeric.gdc_realn.bam 100758197 BAM chimeric harmonized CPTAC3 9ad39258-2668-46fc-9353-bc14c111743b 81f1cffea2b0bfd041b2d9fe62fb27d3 {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.RNA-Seq.genomic.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.genomic.gdc_realn.bam 7656000339 BAM genomic harmonized CPTAC3 485b5cb0-e380-4164-9844-c92554440a7b 38de885e5ace8c0063da88685241a488 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.RNA-Seq.genomic.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.genomic.gdc_realn.bam 9037763584 BAM genomic harmonized CPTAC3 83b04a94-1e32-45ad-82e9-4514a9285704 6f64b3c6370eb3b04b2faec81016e3db {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.RNA-Seq.S15_L004_R1.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R1_001.fastq.gz 3733021017 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 52ed1a7a-21a2-4723-9c10-f9ab61ebded1 82f2654a24efa22596de9ca384f3051e {"aliquot_tag": "ALQ_454bc4ab", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.RNA-Seq.S15_L004_R2.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R2_001.fastq.gz 3719756463 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 fdbb3ee9-6312-4094-913d-ad95d73301b0 5c3f556988dcf1b5abac693b0343dd5e {"aliquot_tag": "ALQ_454bc4ab", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.RNA-Seq.S31_L007_R1.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R1_001.fastq.gz 3824514385 FASTQ S31_L007_R1 submitted_unaligned CPTAC3 516c640a-c178-4bd0-87e8-203ae1af4ff3 1ef5f2dbe9ec7d21b8e351b929e01076 {"aliquot_tag": "ALQ_3f8b97cb", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.RNA-Seq.S31_L007_R2.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R2_001.fastq.gz 4130462294 FASTQ S31_L007_R2 submitted_unaligned CPTAC3 7c9a2e6d-0af7-45f5-afff-ab09ba86dbd6 caa6b4e1f2bad421ac4a1f1ee32844cc {"aliquot_tag": "ALQ_3f8b97cb", "sample": "S31", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.RNA-Seq.transcriptome.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.transcriptome.gdc_realn.bam 10025001487 BAM transcriptome harmonized CPTAC3 30ab7550-be6e-4f18-9f99-44a8e7d764e8 8cb8438d9d44e2cafa26c94e8a336119 {"aliquot_tag": "ALQ_454bc4ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.RNA-Seq.transcriptome.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.transcriptome.gdc_realn.bam 11828760220 BAM transcriptome harmonized CPTAC3 61052aa7-de8f-4e84-b60e-e351eaeac151 6d1740b1e10241d9fd3c540cb1e704bf {"aliquot_tag": "ALQ_3f8b97cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.WGS.A C3L-02951 LSCC WGS tissue_normal CPT0197170009 CPT0197170009.WholeGenome.RP-1303.bam 68691099892 BAM submitted_aligned CPTAC3 c6d7a343-9244-41a2-820c-66cfc91ab31a 845aad49b0afcb78029d8d0f17cb5614 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.WGS.A.hg38 C3L-02951 LSCC WGS tissue_normal CPT0197170009 8346e137-57c1-4c12-ad48-0fb8561ff80e_wgs_gdc_realn.bam 99463677477 BAM harmonized CPTAC3 9489071b-55d3-4f2e-83a8-5859c8a9641c ef278c24630f5cb0522ab53bac31b9f9 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.WGS.N C3L-02951 LSCC WGS blood_normal CPT0197840002 CPT0197840002.WholeGenome.RP-1303.bam 51282937574 BAM submitted_aligned CPTAC3 b3358590-0bea-49c3-b400-4a048eae90e9 2ec2756bfdd3e1d605d07be1c93071d3 {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02951.WGS.N.hg38 C3L-02951 LSCC WGS blood_normal CPT0197840002 4df1dc43-1efa-4b94-b67a-20022c5480d9_wgs_gdc_realn.bam 74168944308 BAM harmonized CPTAC3 a9df6ab2-8f0a-485e-a5e7-1dbe20db6169 664394feccb4fb3771db5fc8ce1853da {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02951.WGS.T C3L-02951 LSCC WGS tumor CPT0197150009 CPT0197150009.WholeGenome.RP-1303.bam 54880218309 BAM submitted_aligned CPTAC3 9e6cf66d-c8fe-4a5e-9137-2940caf21a05 95eabc0d250c4e7076972fa8616f791b {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.WGS.T.hg38 C3L-02951 LSCC WGS tumor CPT0197150009 773198bc-d32a-4963-b33a-af0793609e9a_wgs_gdc_realn.bam 79044046007 BAM harmonized CPTAC3 75aef4ef-f9ef-40f5-90f1-2f8d627efcb0 9aee8076de1c55f976db613bd0656fde {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.WXS.A C3L-02951 LSCC WXS tissue_normal CPT0197170009 CPT0197170009.WholeExome.RP-1303.bam 28714652759 BAM submitted_aligned CPTAC3 d2539bc6-9b5b-4574-a9ca-de37801522e4 79a4cbaa598b97d3322331257db0d76c {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.WXS.A.hg38 C3L-02951 LSCC WXS tissue_normal CPT0197170009 8346e137-57c1-4c12-ad48-0fb8561ff80e_wxs_gdc_realn.bam 38999254243 BAM harmonized CPTAC3 50c7c315-5e75-4844-a0c5-4c95ed604ecf c1d63b33677d3e0d65160118c0776ba5 {"aliquot_tag": "ALQ_d5f4d93a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02951.WXS.N C3L-02951 LSCC WXS blood_normal CPT0197840002 CPT0197840002.WholeExome.RP-1303.bam 34531655335 BAM submitted_aligned CPTAC3 f18a616b-e67a-4e08-9902-da916fd6953a 41250a92f76deca220545bf57dd0a1b8 {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02951.WXS.N.hg38 C3L-02951 LSCC WXS blood_normal CPT0197840002 4df1dc43-1efa-4b94-b67a-20022c5480d9_wxs_gdc_realn.bam 46811514575 BAM harmonized CPTAC3 e8287cd5-5064-4d21-acb7-0bf366e3a13a 92fb122c5a6e21eae60ac4afb1ae568e {"aliquot_tag": "ALQ_22892baa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02951.WXS.T C3L-02951 LSCC WXS tumor CPT0197150009 CPT0197150009.WholeExome.RP-1303.bam 23315658617 BAM submitted_aligned CPTAC3 6bba58a5-3c08-409a-b76d-9a0928b5bda0 888768503cf5b3449a823d869c331e5f {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02951.WXS.T.hg38 C3L-02951 LSCC WXS tumor CPT0197150009 773198bc-d32a-4963-b33a-af0793609e9a_wxs_gdc_realn.bam 32313366048 BAM harmonized CPTAC3 2a3c944f-607b-4ab1-8829-3dd2a77da2ef 35f7dc21aa35e63677dbe0455f71020c {"aliquot_tag": "ALQ_af348a5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02953.MethArray.Green.T C3L-02953 UCEC Methylation_Array tumor CPT0161590011 203561620089_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 38dffe0e-8d8c-4b53-96f2-54699a6f8f81 f20a6f58bf01bb8c5f0564fb8e25c13d {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.MethArray.Red.T C3L-02953 UCEC Methylation_Array tumor CPT0161590011 203561620089_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 1bb9317e-2420-4137-8118-97a9659ac1f0 7ea1976ad3cd5412f2bdaefff7802877 {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.miRNA-Seq.S9_L003_R1.T C3L-02953 UCEC miRNA-Seq tumor CPT0161590014 190508_UNC31-K00269_0215_BH7FYKBBXY_GATCAG_S9_L003_R1_001.unaln.bam 182131109 BAM S9_L003_R1 submitted_unaligned CPTAC3 2fe6bc12-00ce-4115-bc49-c20ba3b6cc96 d6bc40885472ab95d3f5a8c86f347d71 {"aliquot_tag": "ALQ_2c0f4f27", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.miRNA-Seq.T.hg38 C3L-02953 UCEC miRNA-Seq tumor CPT0161590014 7533afe2-28a2-4dac-b7cf-c4ee4d92cfc5_mirnaseq_gdc_realn.bam 205883099 BAM harmonized CPTAC3 ef4a3c2c-63c0-4b3c-8d81-a7e0f06a9e8a e88283b59880dab4145f2e4f6b06e89a {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.chimeric.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.chimeric.gdc_realn.bam 36576593 BAM chimeric harmonized CPTAC3 b2ff1b2b-16f4-459b-a010-7ba8ea1f71cf 8bc062b28d9b7e01f3dae1cc3be62b3c {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.chimeric.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.chimeric.gdc_realn.bam 156544559 BAM chimeric harmonized CPTAC3 bd2a2d2c-7f50-4475-84de-f741588609ee d51774222b8dc9888b07943224bb936b {"aliquot_tag": "ALQ_e14520e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.genomic.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.genomic.gdc_realn.bam 8715154184 BAM genomic harmonized CPTAC3 2c02422d-904e-4a09-8714-651a828d1840 79b6287b44e6d8eb7429e5bdb977ac9b {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.genomic.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.genomic.gdc_realn.bam 8528697775 BAM genomic harmonized CPTAC3 909c4090-6fa8-4ad6-ad7b-a2937273d2b8 757bfba03084a8abd3c8fd17eef96824 {"aliquot_tag": "ALQ_e14520e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.S29_L008_R1.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R1_001.fastq.gz 4097115923 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 0cf1a940-7d2c-47ed-84b2-25088542b094 655d7a04ed020819d18bc5576c43ac32 {"aliquot_tag": "ALQ_2c0f4f27", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.S29_L008_R2.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R2_001.fastq.gz 4793311223 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 aa7f2353-a16a-40d5-b1df-bf3c3ec433a2 a0449e04ebbc42c9f22c05fcac0fe511 {"aliquot_tag": "ALQ_2c0f4f27", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.S59_R1.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R1_001.fastq.gz 5030440707 FASTQ S59_R1 submitted_unaligned CPTAC3 2cc8674b-65fa-4add-9ead-07ee6ebd3824 8f5fbae8a76994cd9d614dbd408ac97c {"aliquot_tag": "ALQ_e14520e1", "sample": "S59", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.S59_R2.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R2_001.fastq.gz 5191907036 FASTQ S59_R2 submitted_unaligned CPTAC3 2915e2af-868e-4824-a858-2efe59097325 3da45196f1b00e069d5f9c9a0dcda7ae {"aliquot_tag": "ALQ_e14520e1", "sample": "S59", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.transcriptome.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.transcriptome.gdc_realn.bam 11242818702 BAM transcriptome harmonized CPTAC3 edddd5cf-90af-4121-9629-74cd8f5a35b3 74db8975e9b52e693ec877754d5cffdc {"aliquot_tag": "ALQ_2c0f4f27", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.RNA-Seq.transcriptome.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.transcriptome.gdc_realn.bam 4417592853 BAM transcriptome harmonized CPTAC3 b1b0d675-cc73-41ed-97a6-268bec3bd4a8 a5d004c892b0357f41897459249e02ee {"aliquot_tag": "ALQ_e14520e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.WGS.N C3L-02953 UCEC WGS blood_normal CPT0162520002 CPT0162520002.WholeGenome.RP-1303.bam 78834093706 BAM submitted_aligned CPTAC3 a912179c-8e94-4098-b690-b70059d66043 820e0dc8f463627c37ab0213f858aa04 {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02953.WGS.N.hg38 C3L-02953 UCEC WGS blood_normal CPT0162520002 9bc1bf3d-4c79-4144-bef0-90730270b764_wgs_gdc_realn.bam 115309510897 BAM harmonized CPTAC3 06bdc9bb-c645-4a26-a2fe-2a38b175b531 cb5a45898fb09312c55ef14232403efa {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02953.WGS.T C3L-02953 UCEC WGS tumor CPT0161590011 CPT0161590011.WholeGenome.RP-1303.bam 83906829976 BAM submitted_aligned CPTAC3 f52db603-3db8-4877-9420-472156b5f5f8 57900db0c4f5e1ad37e8fd599365fc0d {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.WGS.T.hg38 C3L-02953 UCEC WGS tumor CPT0161590011 e420eef5-8b13-49c1-ab87-f9138d283c9a_wgs_gdc_realn.bam 118165266587 BAM harmonized CPTAC3 e4493f47-d3c8-426c-a1c5-68e2217a1736 4116873d51f9f37cd1811e03bd53791d {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.WXS.N C3L-02953 UCEC WXS blood_normal CPT0162520002 CPT0162520002.WholeExome.RP-1303.bam 22512211371 BAM submitted_aligned CPTAC3 538532dc-d19a-4879-bf99-64c52c73c4db 73f04097e65395d8a59e7dd4668526bc {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02953.WXS.N.hg38 C3L-02953 UCEC WXS blood_normal CPT0162520002 9bc1bf3d-4c79-4144-bef0-90730270b764_wxs_gdc_realn.bam 30788634180 BAM harmonized CPTAC3 5aaf068a-0d37-4dab-a45f-7ea22c8b2ca4 4f6376bc2578012080d6df9428132622 {"aliquot_tag": "ALQ_9a4ff0df", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02953.WXS.T C3L-02953 UCEC WXS tumor CPT0161590011 CPT0161590011.WholeExome.RP-1303.bam 21992805796 BAM submitted_aligned CPTAC3 641ef11a-73e7-4904-8834-20ddf7774db9 a0cfe5643ddb4d7aa36189bf4723cdc5 {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02953.WXS.T.hg38 C3L-02953 UCEC WXS tumor CPT0161590011 e420eef5-8b13-49c1-ab87-f9138d283c9a_wxs_gdc_realn.bam 31033445120 BAM harmonized CPTAC3 69b75aeb-dfa0-4444-8ec2-d3812f817f21 d16bdcd99acc327ac2784b370f5e9a17 {"aliquot_tag": "ALQ_5c65bba8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02954.MethArray.Green.A C3L-02954 LUAD Methylation_Array tissue_normal CPT0161900006 203561450068_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 5dadb4c8-c1e5-47a7-a3db-e2dd392db81b 865016c30450f6c8f331a1f6357117f7 {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.MethArray.Green.T C3L-02954 LUAD Methylation_Array tumor CPT0161890006 203561450046_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 35eda005-c4b9-4516-964e-ad1fc8d0e1d5 7faa033717344464e64a4c18b313ff88 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.MethArray.Red.A C3L-02954 LUAD Methylation_Array tissue_normal CPT0161900006 203561450068_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 88ba3a17-a568-4dec-8f37-3f7990171cf2 32c2168ee930b961585c438b4fca14ce {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.MethArray.Red.T C3L-02954 LUAD Methylation_Array tumor CPT0161890006 203561450046_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 0c1c3ec5-5a1d-4a93-94d9-b58d432f162c 65085231455f16cdd54d443b6c4ee898 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.miRNA-Seq.A.hg38 C3L-02954 LUAD miRNA-Seq tissue_normal CPT0161900009 0b6c9fa0-bbbd-4a54-86cd-f4f00314f962_mirnaseq_gdc_realn.bam 215754971 BAM harmonized CPTAC3 4e833128-a70a-4165-8ac3-0b2a20181400 ec31fed0b6b0726123addfd8a724fc1d {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.miRNA-Seq.S12_L005_R1.T C3L-02954 LUAD miRNA-Seq tumor CPT0161890009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCGTCC_S12_L005_R1_001.unaln.bam 164738137 BAM S12_L005_R1 submitted_unaligned CPTAC3 2930e683-3884-44fe-a72f-356871cbdf62 027e4b45b4e8244773b710e9fb9b1abe {"aliquot_tag": "ALQ_f73b1105", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.miRNA-Seq.S28_L007_R1.A C3L-02954 LUAD miRNA-Seq tissue_normal CPT0161900009 190712_UNC32-K00270_0192_BH7HL3BBXY_ACAGTG_S28_L007_R1_001.unaln.bam 187752988 BAM S28_L007_R1 submitted_unaligned CPTAC3 ec7cf79a-9f46-4708-80a6-6df020ec4683 8028971ee70d18f5f5354a36d2462c32 {"aliquot_tag": "ALQ_3177a0d1", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.miRNA-Seq.T.hg38 C3L-02954 LUAD miRNA-Seq tumor CPT0161890009 5fbbc952-b7cb-4ac5-b61c-836a4545cd76_mirnaseq_gdc_realn.bam 182839501 BAM harmonized CPTAC3 d3a447ff-a44d-4b49-b23f-cfe5e3816acd 21af8a7e43473a44ddd924b6879d2481 {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.RNA-Seq.chimeric.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.chimeric.gdc_realn.bam 66005115 BAM chimeric harmonized CPTAC3 c166a063-8252-47d3-a75a-035f407e2b5e 4fc956e30d1095da135a50ac5dac6000 {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.RNA-Seq.chimeric.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.chimeric.gdc_realn.bam 39608861 BAM chimeric harmonized CPTAC3 92ea99b0-ed36-4dad-8875-d89e0f79459d 525859f5dd11a1dd6a9b240d8ddc82bc {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.RNA-Seq.genomic.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.genomic.gdc_realn.bam 10306113151 BAM genomic harmonized CPTAC3 48bb7228-af9f-47cc-921c-907dac5a18f1 fd34c48e97c3f762232a01e992425cd4 {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.RNA-Seq.genomic.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.genomic.gdc_realn.bam 13438265989 BAM genomic harmonized CPTAC3 93504739-e876-4ea4-8a71-e541947ebd37 30f766ba45943e3e6a2c1af95b8ed3f9 {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.RNA-Seq.S12_L003_R1.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R1_001.fastq.gz 4458540622 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 5fe3fe64-6744-4729-b179-5337065a5260 2fce56ef1306e61e4f9d5067d936bf21 {"aliquot_tag": "ALQ_f73b1105", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.RNA-Seq.S12_L003_R2.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R2_001.fastq.gz 5116470503 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 f37eca52-6cde-4686-8899-4dc0dc52b4c1 dbd01c6827d00cd93f8f0885a650d168 {"aliquot_tag": "ALQ_f73b1105", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.RNA-Seq.S18_L006_R1.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R1_001.fastq.gz 3805429222 FASTQ S18_L006_R1 submitted_unaligned CPTAC3 9d871e37-e6a9-4848-9e82-56aae6c8b4a3 39bd9a90bb28a8c167c4124e620bb1e3 {"aliquot_tag": "ALQ_3177a0d1", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.RNA-Seq.S18_L006_R2.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R2_001.fastq.gz 4082573186 FASTQ S18_L006_R2 submitted_unaligned CPTAC3 d1038cb1-8e4d-49c6-b41b-bbf57d007d37 abdc7979b5959f896aa896d5c2195fce {"aliquot_tag": "ALQ_3177a0d1", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.RNA-Seq.transcriptome.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.transcriptome.gdc_realn.bam 7942097334 BAM transcriptome harmonized CPTAC3 5c0b486c-61d3-4b14-949b-64df41ace625 cc4f932a7b77dbca67bf5c40c24b0b7a {"aliquot_tag": "ALQ_3177a0d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.RNA-Seq.transcriptome.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.transcriptome.gdc_realn.bam 10914388924 BAM transcriptome harmonized CPTAC3 47735cb0-f98e-43ed-bf71-a3a92830f3fc 013e8089f443644c89fb2fe48b24db0f {"aliquot_tag": "ALQ_f73b1105", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.WGS.N C3L-02954 LUAD WGS blood_normal CPT0162580002 CPT0162580002.WholeGenome.RP-1303.bam 81211486224 BAM submitted_aligned CPTAC3 47d2d3b9-db3d-4b92-9a5d-c60491c15f4c f11b4d9e6f4afa6ce3c60923f0725ffd {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02954.WGS.N.hg38 C3L-02954 LUAD WGS blood_normal CPT0162580002 5241b5b0-f264-4a87-804c-b0bff2e35445_wgs_gdc_realn.bam 116359383690 BAM harmonized CPTAC3 a2662d55-b8c2-4a39-85e7-c37d2281cd29 ed937dba083a3bcde7f510595f661d8d {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02954.WGS.T C3L-02954 LUAD WGS tumor CPT0161890006 CPT0161890006.WholeGenome.RP-1303.bam 55456771882 BAM submitted_aligned CPTAC3 45212ad3-047b-4953-a9eb-3e0ad3d5f5c2 7576ef15180a59d341558ea601dd4fff {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.WGS.T.hg38 C3L-02954 LUAD WGS tumor CPT0161890006 a8640d62-cf9b-42cf-a694-6f477564989a_wgs_gdc_realn.bam 79210203409 BAM harmonized CPTAC3 4587695c-f58f-4ca4-a65d-9dc7b91187a7 94e798e51862853a657e00a9d9677289 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.WXS.A C3L-02954 LUAD WXS tissue_normal CPT0161900006 CPT0161900006.WholeExome.RP-1303.bam 18804577245 BAM submitted_aligned CPTAC3 5820224e-1112-4a43-8393-e3a14bf5570b 6acf45ee4200fa2f90346904d5b1ecea {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.WXS.A.hg38 C3L-02954 LUAD WXS tissue_normal CPT0161900006 fbb644a8-7925-4144-b909-58b0f722fd3c_wxs_gdc_realn.bam 26091084151 BAM harmonized CPTAC3 c61e9373-e920-4563-a443-600478c848be 91b6db257bee95d206e4816a73ec9eb6 {"aliquot_tag": "ALQ_a1c8bd40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02954.WXS.N C3L-02954 LUAD WXS blood_normal CPT0162580002 CPT0162580002.WholeExome.RP-1303.bam 27266698503 BAM submitted_aligned CPTAC3 5342858b-87dd-41fe-afcd-0e1bc80aa3e7 a16af38485b83b38cb9f7cbce7898b4b {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02954.WXS.N.hg38 C3L-02954 LUAD WXS blood_normal CPT0162580002 5241b5b0-f264-4a87-804c-b0bff2e35445_wxs_gdc_realn.bam 37869136081 BAM harmonized CPTAC3 afc79d7a-98b1-44c9-8e16-4c80c19bc429 2433f5ca5868382c15e6246c806d0d88 {"aliquot_tag": "ALQ_d0ffe87e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02954.WXS.T C3L-02954 LUAD WXS tumor CPT0161890006 CPT0161890006.WholeExome.RP-1303.bam 23187496598 BAM submitted_aligned CPTAC3 4b6f48c0-dc4e-4757-86f4-93b2b78cc73b a943e7e04e220dd247edb0ff4ebc2497 {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02954.WXS.T.hg38 C3L-02954 LUAD WXS tumor CPT0161890006 a8640d62-cf9b-42cf-a694-6f477564989a_wxs_gdc_realn.bam 31936184421 BAM harmonized CPTAC3 c209291e-e439-4bef-9be0-0a95c0d7b90e dcee5cb435778e1818fc57bed751726f {"aliquot_tag": "ALQ_67840c94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.MethArray.Green.T C3L-02955 GBM Methylation_Array tumor CPT0196850009 203219670150_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 41d3c09c-ae28-4b82-981d-1a9fc2d408a5 4046c17e502e2e0666b3e8fd4ad02b32 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.MethArray.Red.T C3L-02955 GBM Methylation_Array tumor CPT0196850009 203219670150_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6f796820-0884-4071-9165-e28fcef9582a b1b9416f739c02103345aac3fb5cc8d5 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.miRNA-Seq.S19_L003_R1.T C3L-02955 GBM miRNA-Seq tumor CPT0196850006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGAAA_S19_L003_R1_001.unaln.bam 296456423 BAM S19_L003_R1 submitted_unaligned CPTAC3 3fec007c-6da8-458a-a16c-edb26d20c720 cc11b36538633ca093bec10e98a578ed {"aliquot_tag": "ALQ_bef3cdb7", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.miRNA-Seq.T.hg38 C3L-02955 GBM miRNA-Seq tumor CPT0196850006 906a2caf-32cc-44a6-a2e2-2a8b24feb405_mirnaseq_gdc_realn.bam 326699299 BAM harmonized CPTAC3 8d91c5c6-1875-43bb-a468-6d9ae8e055a8 b9e9f375adcd61196ba5e913066d7ae0 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.RNA-Seq.chimeric.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.chimeric.gdc_realn.bam 209106858 BAM chimeric harmonized CPTAC3 cc534cae-0de2-481e-a5c4-06136d7c98c4 6eb04864072d1df68a90a4ea341ac797 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.RNA-Seq.genomic.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.genomic.gdc_realn.bam 9183283400 BAM genomic harmonized CPTAC3 9203c07c-df98-47dd-b976-7baa5d94ce9a c12361d9cb12095be16eaaa807714f20 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.RNA-Seq.S27_L006_R1.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R1_001.fastq.gz 4173598325 FASTQ S27_L006_R1 submitted_unaligned CPTAC3 e7789396-db2e-4d22-834a-b310021a57ee 8fa2f50e55412694c64f02bf4bcf7871 {"aliquot_tag": "ALQ_bef3cdb7", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.RNA-Seq.S27_L006_R2.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R2_001.fastq.gz 4407032916 FASTQ S27_L006_R2 submitted_unaligned CPTAC3 fe6a58b1-0a07-44f2-b4c1-606ea06a5158 7f8211a460934bd29b202d4662f38428 {"aliquot_tag": "ALQ_bef3cdb7", "sample": "S27", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.RNA-Seq.transcriptome.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.transcriptome.gdc_realn.bam 12671365646 BAM transcriptome harmonized CPTAC3 9190c816-998b-4631-a114-b5d5b914425f aa5489abb0dcd507bbf87b7cb55207c0 {"aliquot_tag": "ALQ_bef3cdb7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.WGS.N C3L-02955 GBM WGS blood_normal CPT0197750002 CPT0197750002.WholeGenome.RP-1303.bam 76394448497 BAM submitted_aligned CPTAC3 16388570-a5b3-4e44-a7e8-02c20921bc71 0574faebfa78bc0039161db9c4682122 {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02955.WGS.N.hg38 C3L-02955 GBM WGS blood_normal CPT0197750002 abef83c1-3c22-4357-9f48-a52ead2d1c6a_wgs_gdc_realn.bam 109886067285 BAM harmonized CPTAC3 f4926ea1-e97c-4cdd-a27f-720fdb5e33f2 0707ff2ceaab67b80f59cddc4cbf9f7f {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02955.WGS.T C3L-02955 GBM WGS tumor CPT0196850009 CPT0196850009.WholeGenome.RP-1303.bam 55020546674 BAM submitted_aligned CPTAC3 a2ff5ad9-b91d-46d0-8e54-9519f4668fd1 61d050934f61515048dd235964292ab9 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.WGS.T.hg38 C3L-02955 GBM WGS tumor CPT0196850009 7258c996-c299-4b53-93bf-85df20425431_wgs_gdc_realn.bam 80028595525 BAM harmonized CPTAC3 6269ec0f-cd4d-49a9-8819-2ce342e3ea13 dd4270efe5bdb555825d73f958f5af87 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.WXS.N C3L-02955 GBM WXS blood_normal CPT0197750002 CPT0197750002.WholeExome.RP-1303.bam 44694030957 BAM submitted_aligned CPTAC3 7c32f2b0-f25b-47b3-bd21-19c0bcd6b297 c4bf48fa0e779334184e99b1d401a753 {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02955.WXS.N.hg38 C3L-02955 GBM WXS blood_normal CPT0197750002 abef83c1-3c22-4357-9f48-a52ead2d1c6a_wxs_gdc_realn.bam 61179455806 BAM harmonized CPTAC3 535274f1-2bca-41a0-923b-ec0e1b8c5440 0e17c86ee2da66d5ff616948e525f15e {"aliquot_tag": "ALQ_eebfb0cf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02955.WXS.T C3L-02955 GBM WXS tumor CPT0196850009 CPT0196850009.WholeExome.RP-1303.bam 23009684162 BAM submitted_aligned CPTAC3 478ed93d-e81d-4ee1-af82-d3fa85ce933a 2f2ce4427f8b135b8de6d6efdbdd02a1 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02955.WXS.T.hg38 C3L-02955 GBM WXS tumor CPT0196850009 7258c996-c299-4b53-93bf-85df20425431_wxs_gdc_realn.bam 31696351927 BAM harmonized CPTAC3 278a2b87-c006-4b75-bca9-5cf3954c8412 023501b519ed3cfa26924882cb7b9141 {"aliquot_tag": "ALQ_2e4cd026", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.ANN_cb0676eb.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.chimeric.gdc_realn.bam 150804172 BAM chimeric harmonized CPTAC3 5c06b1de-050e-4945-89c3-b700307e164d 5127d103b748b92cc7dd4e8574f9a8af {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.ANN_cb0676eb.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.genomic.gdc_realn.bam 8101255691 BAM genomic harmonized CPTAC3 af50384e-151d-485c-b421-077b3a5039c9 a51988e565012f5dfa6c3b6fa095f7c5 {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.ANN_cb0676eb.RNA-Seq.S15_L008_R1.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R1_001.fastq.gz 3329611166 FASTQ S15_L008_R1 submitted_unaligned CPTAC3 0a392860-e58e-418e-b55f-a3bf63e70609 5426bfc2763d7522dd934490dfd82823 {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.ANN_cb0676eb.RNA-Seq.S15_L008_R2.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R2_001.fastq.gz 3833389566 FASTQ S15_L008_R2 submitted_unaligned CPTAC3 93b3cf8a-9ac7-4c5c-9283-76376d0a9259 2d4b46e2127e177681c5029e17dd3f3a {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S15", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.ANN_cb0676eb.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.transcriptome.gdc_realn.bam 9864168981 BAM transcriptome harmonized CPTAC3 64d29bd4-2931-4397-b2b7-e1d8c0dd3625 4024af8d559209fd194176dfe74a2eee {"aliquot_tag": "ANN_cb0676eb", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_134b84f1.RNA-Seq.chimeric.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.chimeric.gdc_realn.bam 200387488 BAM chimeric harmonized CPTAC3 44e1ce0f-b8ad-4e7f-8962-4ec6fead9523 a75ceaa8fb0e8baa1f3f4d79efaa1154 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02956.DUP_134b84f1.RNA-Seq.genomic.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.genomic.gdc_realn.bam 6887975463 BAM genomic harmonized CPTAC3 66333741-1c95-46ff-931d-afa5befc4f8b 03ea5a1191b0203d714627382ef7adc4 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02956.DUP_134b84f1.RNA-Seq.S24_L007_R1.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R1_001.fastq.gz 3365077576 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 3fa608a8-5123-4c13-83a6-ac19c44a8c6f 769d81a951485be8eb746d9864619ae3 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02956.DUP_134b84f1.RNA-Seq.S24_L007_R2.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R2_001.fastq.gz 3635602400 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 c86cb301-a574-4554-9d33-69d7c8881784 ef3ec6cf399edc399d9f6ed586ecc4e4 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02956.DUP_134b84f1.RNA-Seq.transcriptome.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.transcriptome.gdc_realn.bam 9828872244 BAM transcriptome harmonized CPTAC3 e9fc2a6c-49fc-4663-8b30-348d615a385f c2b972945f03a2f4888ecae61c55e470 {"aliquot_tag": "DUP_134b84f1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02956.DUP_3b7ee29f.WXS.T C3L-02956 PDA WXS tumor CPT0161630032 CPT0161630032.WholeExome.RP-1303.bam 42042783523 BAM submitted_aligned CPTAC3 0895bfe7-17d5-43ca-b97d-0eb72d1b3ae8 1b0f5bfac8efbb5292f136a00a9516ac {"aliquot_tag": "DUP_3b7ee29f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_3b7ee29f.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630032 1eb0b36a-3410-4404-8b94-318edd048b36_wxs_gdc_realn.bam 58254334863 BAM harmonized CPTAC3 7cf60c79-091f-4c2e-8251-55c4b1879eac 48ba17237899d3e103cc25fed59d0c20 {"aliquot_tag": "DUP_3b7ee29f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_4b141610.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.chimeric.gdc_realn.bam 73142843 BAM chimeric harmonized CPTAC3 4ead405a-e683-4286-b22d-1699c2638e12 5460d7d51354a19070ae056513f82bb8 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_4b141610.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.genomic.gdc_realn.bam 8526987797 BAM genomic harmonized CPTAC3 7150c058-4804-4c2d-8e7e-b5b7dedccd1f 301f6d6ecf09c65680afb88181147d37 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_4b141610.RNA-Seq.S17_L006_R1.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R1_001.fastq.gz 3942741206 FASTQ S17_L006_R1 submitted_unaligned CPTAC3 362ffe9e-e45c-46c4-a6a9-f2e069be19aa b0cfbaf4dbd9e571bbeecf954f80f8f8 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_4b141610.RNA-Seq.S17_L006_R2.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R2_001.fastq.gz 4239935508 FASTQ S17_L006_R2 submitted_unaligned CPTAC3 38b6b377-8ca1-40a5-a38f-ecd1cbfa3b7b f5f85d146463b5ae7e0fc70b32b2d379 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_4b141610.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.transcriptome.gdc_realn.bam 11180541083 BAM transcriptome harmonized CPTAC3 f7828f74-a428-4206-8b04-8fc2ff5b92a3 2443162d009147a7dcdeb58fa01695b1 {"aliquot_tag": "DUP_4b141610", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_a277b325.WXS.T C3L-02956 PDA WXS tumor CPT0161630031 CPT0161630031.WholeExome.RP-1303.bam 22578971236 BAM submitted_aligned CPTAC3 b61079a1-a06a-4ff7-8114-38397c5b45a3 128bff2e86a679b52e977ecf89666724 {"aliquot_tag": "DUP_a277b325", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_a277b325.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630031 f51e4a35-fb0f-4187-8241-7474a2c40fff_wxs_gdc_realn.bam 32325792008 BAM harmonized CPTAC3 65f545f3-877a-45a1-b6d3-a8b078bbe840 faa70056c787dd7b61d41c931b3d9639 {"aliquot_tag": "DUP_a277b325", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_a72fd96f.WXS.N C3L-02956 PDA WXS blood_normal CPT0162530002 CPT0162530002.WholeExome.RP-1303.bam 21966428151 BAM submitted_aligned CPTAC3 d49afefc-4eb7-4bb9-91c8-6d8290df0118 6007431568a954f6b5e1e141ae953b0e {"aliquot_tag": "DUP_a72fd96f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02956.DUP_a72fd96f.WXS.N.hg38 C3L-02956 PDA WXS blood_normal CPT0162530002 fad86bd3-188e-4577-b299-82ca3a159953_wxs_gdc_realn.bam 30810046647 BAM harmonized CPTAC3 39004d60-c9c3-493e-87dc-2e47cfc424a2 22c08bf48aad32c515b9994ca8e3e15e {"aliquot_tag": "DUP_a72fd96f", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02956.DUP_d57083b3.WXS.T C3L-02956 PDA WXS tumor CPT0161630030 CPT0161630030.WholeExome.RP-1303.bam 31707107605 BAM submitted_aligned CPTAC3 8ac73d0d-9a31-4755-a923-e99b44052790 591114edfe34a4aa816b1e0f4130bfe7 {"aliquot_tag": "DUP_d57083b3", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02956.DUP_d57083b3.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630030 bc3ba23b-93a7-4643-aa3c-bce399772e8a_wxs_gdc_realn.bam 43624526879 BAM harmonized CPTAC3 97d8916e-0670-4d6a-b36b-c53b6879b81c f8a20ed359a0cdc7f894f7d028661721 {"aliquot_tag": "DUP_d57083b3", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.MethArray.Green.A C3L-02957 LUAD Methylation_Array tissue_normal CPT0196900006 203219640133_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 76f06ee5-750f-4105-855e-2dd5ccfe593f 9e920eb73f34265257d851fb99ad4b08 {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.MethArray.Green.T C3L-02957 LUAD Methylation_Array tumor CPT0196880006 203220070154_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 85725044-8fa9-401b-9e87-e925d0cea228 d7f7c9def2449e907e2381107b1d26c1 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.MethArray.Red.A C3L-02957 LUAD Methylation_Array tissue_normal CPT0196900006 203219640133_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5ee49171-905e-4550-bac5-6ac3d2643fbb 06d7f19fff8f6a8c5a1746d1eb4fc435 {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.MethArray.Red.T C3L-02957 LUAD Methylation_Array tumor CPT0196880006 203220070154_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 c53de95a-b89e-4d1a-b250-76a2d0c8f8a0 b0bbdc338600abf7ed3a7ff9d044a19d {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.miRNA-Seq.A.hg38 C3L-02957 LUAD miRNA-Seq tissue_normal CPT0196900009 057e8fb6-cdb0-45b6-9e69-e24e006bc0f3_mirnaseq_gdc_realn.bam 287319874 BAM harmonized CPTAC3 fffcfb42-fda8-4f11-be8c-5d92167cc748 ad89a3076dae3c661f84a383603be5a3 {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.miRNA-Seq.S15_L006_R1.A C3L-02957 LUAD miRNA-Seq tissue_normal CPT0196900009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L006_R1_001.unaln.bam 262615480 BAM S15_L006_R1 submitted_unaligned CPTAC3 dd4a1ae2-c941-42df-aad8-9c84e518d41d db7cb64307043d27b69a5621282fe0d4 {"aliquot_tag": "ALQ_2df08cf3", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.miRNA-Seq.S27_L006_R1.T C3L-02957 LUAD miRNA-Seq tumor CPT0196880009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L006_R1_001.unaln.bam 201491760 BAM S27_L006_R1 submitted_unaligned CPTAC3 4beefb9d-7cc5-4d19-a1d7-82b2b5fbd57a 188ac89e4bb0463eb000d940981ba8f8 {"aliquot_tag": "ALQ_d6dc1497", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.miRNA-Seq.T.hg38 C3L-02957 LUAD miRNA-Seq tumor CPT0196880009 a190ce63-a916-4074-ab9a-f3958230adee_mirnaseq_gdc_realn.bam 220111194 BAM harmonized CPTAC3 cc694ba2-8493-411b-a7b7-5da8147f3f47 e53ffff7a5feccaaa09617bf5fa2c8df {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.RNA-Seq.chimeric.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.chimeric.gdc_realn.bam 45264247 BAM chimeric harmonized CPTAC3 9129b3bc-d958-4b53-85d0-a84112641581 376efc7cb78112f3394a37e51bb0a744 {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.RNA-Seq.chimeric.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.chimeric.gdc_realn.bam 56881130 BAM chimeric harmonized CPTAC3 620a41bf-3d83-47e9-a75c-662bf51e6c22 281fc842f073d36292f2a74f69e7b42d {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.RNA-Seq.genomic.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.genomic.gdc_realn.bam 9646998771 BAM genomic harmonized CPTAC3 3f45ac34-ea34-4e48-9874-cb1609aff7fa afc90b2337d790861d61c682a66406cf {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.RNA-Seq.genomic.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.genomic.gdc_realn.bam 9120502222 BAM genomic harmonized CPTAC3 dbf95a4e-7577-4107-be46-cb0c60b5160d 00d9c84e21533f93aed821aae103abda {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.RNA-Seq.S21_L006_R1.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3771405574 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 fe2a1780-a97f-4730-921f-0d4806d7ad9a d64787b8b43f11b9a3eec42a1d694960 {"aliquot_tag": "ALQ_2df08cf3", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.RNA-Seq.S21_L006_R2.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4215288236 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 4fa0153d-ac70-4270-a6e8-ba699b98466c 8bb3062fb45a8c62f257a89b097ed93f {"aliquot_tag": "ALQ_2df08cf3", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.RNA-Seq.S4_L007_R1.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 4019741573 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 1d5b23ea-0d9c-4115-b397-755c7d3f3862 0ac7e139890ae6530176a5e7eecc12b2 {"aliquot_tag": "ALQ_d6dc1497", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.RNA-Seq.S4_L007_R2.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4479830400 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 112252ec-ef61-4004-8261-6cc86db28f69 200be89c6662a11c04e4107c6c4f1998 {"aliquot_tag": "ALQ_d6dc1497", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.RNA-Seq.transcriptome.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.transcriptome.gdc_realn.bam 8979150395 BAM transcriptome harmonized CPTAC3 c4cea052-6c04-45eb-8d50-d678a1dbf2e9 1ae6c4f4c1f5e700d8ecdc9e2af7a92f {"aliquot_tag": "ALQ_2df08cf3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.RNA-Seq.transcriptome.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.transcriptome.gdc_realn.bam 9572549152 BAM transcriptome harmonized CPTAC3 a0e142f5-e9de-4800-a9a1-915647835c02 34623a31c06e8e699972774fef364dd0 {"aliquot_tag": "ALQ_d6dc1497", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.WGS.A C3L-02957 LUAD WGS tissue_normal CPT0196900006 CPT0196900006.WholeGenome.RP-1303.bam 62173726655 BAM submitted_aligned CPTAC3 fdcd3ba4-ed0f-40f7-b9b4-c3e599fd86f9 c31fd5d570c78cfba893a5087708166d {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.WGS.A.hg38 C3L-02957 LUAD WGS tissue_normal CPT0196900006 7d996912-100d-4a38-9fcd-17a8c82f7c4c_wgs_gdc_realn.bam 91448878304 BAM harmonized CPTAC3 2255e3d0-8329-4c46-a133-ab49c6d8ddbd d78dcda3b64a5ed94f7a3a45b14aa20e {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.WGS.N C3L-02957 LUAD WGS blood_normal CPT0197790002 CPT0197790002.WholeGenome.RP-1303.bam 59017340714 BAM submitted_aligned CPTAC3 bdb342f0-b433-4dab-9277-62f1fac6a59a 8486f036067ab0f84ee4f408c1728935 {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02957.WGS.N.hg38 C3L-02957 LUAD WGS blood_normal CPT0197790002 68970709-7c5f-4fc2-a872-bd91f729fcfa_wgs_gdc_realn.bam 86828294681 BAM harmonized CPTAC3 bf40f37f-e60c-43d9-9781-9e0146665ace ea9d0ed5e7a97e7444cd2bb337ed5ced {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02957.WGS.T C3L-02957 LUAD WGS tumor CPT0196880006 CPT0196880006.WholeGenome.RP-1303.bam 54985988528 BAM submitted_aligned CPTAC3 15cf1841-9e12-4067-9991-0262821554a6 b1d838c75eeee957ac604f0011533590 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.WGS.T.hg38 C3L-02957 LUAD WGS tumor CPT0196880006 e34ca463-6ca4-4f3f-84da-11c98803934e_wgs_gdc_realn.bam 81407353203 BAM harmonized CPTAC3 b3388314-163f-4d9b-9e97-f2305bfa715e 1219b4aa1c8c85fff61e91e82e46ee91 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.WXS.A C3L-02957 LUAD WXS tissue_normal CPT0196900006 CPT0196900006.WholeExome.RP-1303.bam 17867578477 BAM submitted_aligned CPTAC3 bd859efa-47bc-498a-b699-d66eaf8b19b9 5ff71738064569c2b2ac8ce92ce5f097 {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.WXS.A.hg38 C3L-02957 LUAD WXS tissue_normal CPT0196900006 7d996912-100d-4a38-9fcd-17a8c82f7c4c_wxs_gdc_realn.bam 25116390526 BAM harmonized CPTAC3 d5fe0100-1aee-493f-ae40-73efc6a16d24 9c604689a1a7c913871fef9efea5dc0a {"aliquot_tag": "ALQ_bd4f9162", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02957.WXS.N C3L-02957 LUAD WXS blood_normal CPT0197790002 CPT0197790002.WholeExome.RP-1303.bam 29663710549 BAM submitted_aligned CPTAC3 a83f0898-7d70-445b-95f8-288e078a6737 5f36dd42af8467a71b8b8a7e8571841b {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02957.WXS.N.hg38 C3L-02957 LUAD WXS blood_normal CPT0197790002 68970709-7c5f-4fc2-a872-bd91f729fcfa_wxs_gdc_realn.bam 40841975264 BAM harmonized CPTAC3 89ea2f30-a1be-4736-8861-f1b57e5ce52f 4e13610f7097bd895a4809914abf67bd {"aliquot_tag": "ALQ_2b4f5dce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02957.WXS.T C3L-02957 LUAD WXS tumor CPT0196880006 CPT0196880006.WholeExome.RP-1303.bam 26272557890 BAM submitted_aligned CPTAC3 8db19902-1f67-41e1-9e74-0052293e8d92 d2bcb5bacb20169c12bacc8e35f9f5b0 {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02957.WXS.T.hg38 C3L-02957 LUAD WXS tumor CPT0196880006 e34ca463-6ca4-4f3f-84da-11c98803934e_wxs_gdc_realn.bam 36004433035 BAM harmonized CPTAC3 db03cda6-e834-4710-a690-6a503a2d6d5f e60beb421f342cf8893812f733ae4dba {"aliquot_tag": "ALQ_46630906", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.MethArray.Green.A C3L-02958 LUAD Methylation_Array tissue_normal CPT0197000006 203561620080_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d1e5a185-bffa-4367-9efd-18d6a0b1e1eb e7eae392c151b9e7da1e32b08bcd9777 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.MethArray.Green.T C3L-02958 LUAD Methylation_Array tumor CPT0196990006 203561620159_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f1a71d35-2a7b-4b42-87a7-ff2fc8e0490b 5f1772b7923461d5fab6b5709f2e0852 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.MethArray.Red.A C3L-02958 LUAD Methylation_Array tissue_normal CPT0197000006 203561620080_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 5733c7f4-0cac-4137-b24a-bdd451c1519f 3183bd2f981296b0fa8075107357c793 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.MethArray.Red.T C3L-02958 LUAD Methylation_Array tumor CPT0196990006 203561620159_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 66bffcb7-f7b7-49f1-b0bd-3c9e1cc8eeaf 6debf2bab33e996b1e57f2ac64b6e990 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.miRNA-Seq.A.hg38 C3L-02958 LUAD miRNA-Seq tissue_normal CPT0197000009 35722292-ad59-44d3-8634-4c03290412cc_mirnaseq_gdc_realn.bam 333231337 BAM harmonized CPTAC3 f6d74e92-ec0b-4552-b5c0-2bd2ca5b104e cbfded851654a7d4631139cb88218cdb {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.miRNA-Seq.S25_L007_R1.A C3L-02958 LUAD miRNA-Seq tissue_normal CPT0197000009 190712_UNC32-K00270_0192_BH7HL3BBXY_CGATGT_S25_L007_R1_001.unaln.bam 287557113 BAM S25_L007_R1 submitted_unaligned CPTAC3 812df7d9-6c08-428c-9ce0-c4450329df51 fcc8244e45594c44d4cf83238799669c {"aliquot_tag": "ALQ_ac88d68f", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.miRNA-Seq.S9_L005_R1.T C3L-02958 LUAD miRNA-Seq tumor CPT0196990009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTCAA_S9_L005_R1_001.unaln.bam 206466491 BAM S9_L005_R1 submitted_unaligned CPTAC3 f7c7fddd-b8ae-47e5-affd-9d23cbca044e 4e8e8c6248f686a566e3bed8c4931143 {"aliquot_tag": "ALQ_20e0ee82", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.miRNA-Seq.T.hg38 C3L-02958 LUAD miRNA-Seq tumor CPT0196990009 557b980d-96f6-47a5-8d62-c3e4d6ceea10_mirnaseq_gdc_realn.bam 229292545 BAM harmonized CPTAC3 19f39a59-850c-46be-be3d-6260a3e5d711 68628e3cceabf91dd6514665133ad680 {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.RNA-Seq.chimeric.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.chimeric.gdc_realn.bam 60335680 BAM chimeric harmonized CPTAC3 1546351c-dc55-4b19-a6be-803c0d7762b1 dd5762cbc626455347a8e044b05b8c71 {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.RNA-Seq.chimeric.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.chimeric.gdc_realn.bam 29747687 BAM chimeric harmonized CPTAC3 6e426495-d0f1-458d-a759-57d0594e4d5b f1c1a56de02ff3bbb43838c784e7eb79 {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.RNA-Seq.genomic.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.genomic.gdc_realn.bam 13033245522 BAM genomic harmonized CPTAC3 367ca0c0-4cac-4634-8f5a-8d2a2d0a35b2 80016eacee3a7b0e6557dedd8dba3111 {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.RNA-Seq.genomic.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.genomic.gdc_realn.bam 11518742467 BAM genomic harmonized CPTAC3 24b4c32e-75a7-4bef-808d-074e75e8c167 e27f45ec94853d0a4a9b0511589c46c7 {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.RNA-Seq.S31_L008_R1.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R1_001.fastq.gz 5183993274 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 1b53936d-29f5-4f74-b341-97960b35d4c2 2e1992e0b06f3eacb78d7049c224858b {"aliquot_tag": "ALQ_ac88d68f", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.RNA-Seq.S31_L008_R2.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R2_001.fastq.gz 5205588589 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 37efe146-d208-43ae-95eb-adeef2391160 2eda6ce210102f74ea63e5d6920ad3cf {"aliquot_tag": "ALQ_ac88d68f", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.RNA-Seq.S9_L003_R1.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R1_001.fastq.gz 3864631869 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 14b1c2dd-6162-42d0-bb84-df26086f43e8 a7a70d10b6e92749a70edac0cfc0c28a {"aliquot_tag": "ALQ_20e0ee82", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.RNA-Seq.S9_L003_R2.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R2_001.fastq.gz 4313872569 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 e5dd7b54-f117-4957-a753-3fb5f3b21056 7ee9d4b57d46a27de1d23dd818437671 {"aliquot_tag": "ALQ_20e0ee82", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.RNA-Seq.transcriptome.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.transcriptome.gdc_realn.bam 11052934272 BAM transcriptome harmonized CPTAC3 ed997528-62a5-4af2-8a97-f5476c098500 bd52d8d89188ca67162fa5d87d1b43cf {"aliquot_tag": "ALQ_ac88d68f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.RNA-Seq.transcriptome.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.transcriptome.gdc_realn.bam 8715387821 BAM transcriptome harmonized CPTAC3 0535bf97-433f-4f92-8d1b-b30a1c5ec844 cc36dac89bf3ad230ad9733cccac6d4e {"aliquot_tag": "ALQ_20e0ee82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.WGS.N C3L-02958 LUAD WGS blood_normal CPT0197810002 CPT0197810002.WholeGenome.RP-1303.bam 67761141074 BAM submitted_aligned CPTAC3 f296b9c0-4297-4f8f-aa9a-1f2339570abb ad4f96bcfaab7148d6fa3c81efb6ecc7 {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02958.WGS.N.hg38 C3L-02958 LUAD WGS blood_normal CPT0197810002 cd9a2260-db53-4671-b48d-94520a44c979_wgs_gdc_realn.bam 98028187161 BAM harmonized CPTAC3 55241e08-8bbf-4c5f-9078-0f3a422e567d 2bf6b980906e9aab56c0a472396d6dc8 {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02958.WGS.T C3L-02958 LUAD WGS tumor CPT0196990006 CPT0196990006.WholeGenome.RP-1303.bam 76509174772 BAM submitted_aligned CPTAC3 5a92e75c-4a74-4ca5-a4bb-c6f935a4291e f5b51e519abed42817d2973c7248ec43 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.WGS.T.hg38 C3L-02958 LUAD WGS tumor CPT0196990006 42d4673a-9890-4752-8cb4-fb60d04e0626_wgs_gdc_realn.bam 112987968042 BAM harmonized CPTAC3 66d67499-c526-42b2-840f-113fb36718f8 af4e905edcd0ca83a2ff4efcaafeb538 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.WXS.A C3L-02958 LUAD WXS tissue_normal CPT0197000006 CPT0197000006.WholeExome.RP-1303.bam 22727137753 BAM submitted_aligned CPTAC3 3598565a-edd2-429b-a9c0-c37b9603ae5e c24faa8e8fd15c7b6e2ff04eb7932651 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.WXS.A.hg38 C3L-02958 LUAD WXS tissue_normal CPT0197000006 9d105fc0-772b-433b-aff5-a7fd4611b0da_wxs_gdc_realn.bam 31570808144 BAM harmonized CPTAC3 891c0b3e-f6ed-4db2-ade0-7f400addbb45 a375d530a0bf756555e2c0b8e40a34f0 {"aliquot_tag": "ALQ_3c37cb1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02958.WXS.N C3L-02958 LUAD WXS blood_normal CPT0197810002 CPT0197810002.WholeExome.RP-1303.bam 21872269526 BAM submitted_aligned CPTAC3 bdf1c1cf-18a5-4685-9ab5-21c1fc4e4913 10d54786e486c0201cbe2e683e04819d {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02958.WXS.N.hg38 C3L-02958 LUAD WXS blood_normal CPT0197810002 cd9a2260-db53-4671-b48d-94520a44c979_wxs_gdc_realn.bam 30051134828 BAM harmonized CPTAC3 41dd256e-e639-42c7-b18f-fbcf3ddf0448 9184001c1ca0166ec5e72915b3f62c83 {"aliquot_tag": "ALQ_ea69a4da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02958.WXS.T C3L-02958 LUAD WXS tumor CPT0196990006 CPT0196990006.WholeExome.RP-1303.bam 27695301344 BAM submitted_aligned CPTAC3 39f7937a-cce1-491b-a6bd-33b066867e8c fd029cdcacf68b16fcb989e8f597aa27 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02958.WXS.T.hg38 C3L-02958 LUAD WXS tumor CPT0196990006 42d4673a-9890-4752-8cb4-fb60d04e0626_wxs_gdc_realn.bam 38080652437 BAM harmonized CPTAC3 bfe2e19d-a75d-4151-bda6-0fb66acbcc03 b41826253fc2cda5d4555ae1149bb942 {"aliquot_tag": "ALQ_b05ff313", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.MethArray.Green.A C3L-02961 LUAD Methylation_Array tissue_normal CPT0196960006 203561620012_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 97f04715-d30d-46b1-a70b-81474c97197b 72803ad1208735181dd5d323fd3e4109 {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.MethArray.Green.T C3L-02961 LUAD Methylation_Array tumor CPT0196950006 203561450023_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8c2a5a0d-a423-46c2-8d46-3a15998b010b ec24146dc1c5d32ffa289e3a998c5a35 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.MethArray.Red.A C3L-02961 LUAD Methylation_Array tissue_normal CPT0196960006 203561620012_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 4f06ed4e-db65-4360-bdfb-fe8ceeeb41b3 5c30c386efa45acbf6bb596d37fb446d {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.MethArray.Red.T C3L-02961 LUAD Methylation_Array tumor CPT0196950006 203561450023_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 a313e725-b2a6-4da7-91a3-09964f8361e1 77ca3e5c406935ac4947ee0ca79ea0c6 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.miRNA-Seq.A.hg38 C3L-02961 LUAD miRNA-Seq tissue_normal CPT0196960009 655bd47b-81dc-4ce6-91dd-bdc64947b387_mirnaseq_gdc_realn.bam 223601377 BAM harmonized CPTAC3 3c89c82b-52a4-40d4-b23f-d17851f01600 096924ace8bdc1c0c56076216cc64246 {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.miRNA-Seq.S24_L007_R1.A C3L-02961 LUAD miRNA-Seq tissue_normal CPT0196960009 190712_UNC32-K00270_0192_BH7HL3BBXY_ATCACG_S24_L007_R1_001.unaln.bam 190878872 BAM S24_L007_R1 submitted_unaligned CPTAC3 6b42cac8-57bb-444e-ad28-002bad6e5a8f 00746fd238077dce93e70fe37c44808f {"aliquot_tag": "ALQ_a2b07953", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.miRNA-Seq.S8_L005_R1.T C3L-02961 LUAD miRNA-Seq tumor CPT0196950009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTTGTA_S8_L005_R1_001.unaln.bam 233398461 BAM S8_L005_R1 submitted_unaligned CPTAC3 d71c2b2a-bde4-41ba-9fd1-da1c42616650 9d375cf017bcad2843ca5643cb0cb804 {"aliquot_tag": "ALQ_e5100383", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.miRNA-Seq.T.hg38 C3L-02961 LUAD miRNA-Seq tumor CPT0196950009 fc4b3ef8-0c55-4aa3-9453-381d17e1e0b0_mirnaseq_gdc_realn.bam 260085247 BAM harmonized CPTAC3 52992437-3bcd-4bab-8337-25e6776a10b3 0c1e5de963ce4e534261353f9ea57a22 {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.RNA-Seq.chimeric.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.chimeric.gdc_realn.bam 54904097 BAM chimeric harmonized CPTAC3 7789a385-3c9a-4083-8d84-63b514dd28b1 ce2928cdc596e31d8d21f5ad5b0f4480 {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.RNA-Seq.chimeric.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.chimeric.gdc_realn.bam 25040421 BAM chimeric harmonized CPTAC3 5270cf41-a45b-482d-a4b2-93498e04c252 1f415d0d8ef091c43d1858eb2399292e {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.RNA-Seq.genomic.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.genomic.gdc_realn.bam 12410841530 BAM genomic harmonized CPTAC3 217cd573-f498-4222-a248-7f557e0d592c 64195f26b14eadace3d2e8af7669291b {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.RNA-Seq.genomic.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.genomic.gdc_realn.bam 12708844800 BAM genomic harmonized CPTAC3 314b763d-2ad1-4849-8d3b-1da3ea2ba17f 7ae8957e7db9283f3f4de974d0bc7445 {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.RNA-Seq.S16_L004_R1.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R1_001.fastq.gz 3808981603 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 d448ca06-c2ad-4551-ab78-26cd39c8ef1a 623584f050e1b54f3c952db5ec3dec86 {"aliquot_tag": "ALQ_e5100383", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.RNA-Seq.S16_L004_R2.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R2_001.fastq.gz 4358810970 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 154f290e-a3a4-4131-8625-d87ee785e196 b9a83ea3b930795b5a93fae2b13e1473 {"aliquot_tag": "ALQ_e5100383", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.RNA-Seq.S30_L008_R1.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4480977840 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 75b7824a-d69a-4063-a390-8d370f4555db 1726956b5b1e9d8b4563755edf49793a {"aliquot_tag": "ALQ_a2b07953", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.RNA-Seq.S30_L008_R2.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4951711704 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 63b49848-ecb2-4542-852c-fee42dc98479 4a929ee9b4696d4f77abca69dafbc5de {"aliquot_tag": "ALQ_a2b07953", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.RNA-Seq.transcriptome.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.transcriptome.gdc_realn.bam 9645896874 BAM transcriptome harmonized CPTAC3 91dd2cbb-b9cb-4531-9cce-4329cd6a9f13 31415a60afc546ec5dd3f8a637a041cf {"aliquot_tag": "ALQ_a2b07953", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.RNA-Seq.transcriptome.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.transcriptome.gdc_realn.bam 8730294393 BAM transcriptome harmonized CPTAC3 c239c648-b164-4b92-8f76-5cb806da1821 9208c4745bbbf1c66406fb0456181071 {"aliquot_tag": "ALQ_e5100383", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.WGS.N C3L-02961 LUAD WGS blood_normal CPT0197800002 CPT0197800002.WholeGenome.RP-1303.bam 72036266318 BAM submitted_aligned CPTAC3 27b9be0b-3f1e-4ab9-9f4c-c4f41214abb2 68cff7329e09ecc0af23bced79bdd42a {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02961.WGS.N.hg38 C3L-02961 LUAD WGS blood_normal CPT0197800002 c1c3c1de-a5f4-431c-8fa8-bd974fe429d8_wgs_gdc_realn.bam 104998787194 BAM harmonized CPTAC3 da100a30-a64a-4279-8732-0f0bd5fe3a54 362fb24b17340fc7bf0c17358ef098ac {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02961.WGS.T C3L-02961 LUAD WGS tumor CPT0196950006 CPT0196950006.WholeGenome.RP-1303.bam 69867540035 BAM submitted_aligned CPTAC3 bf71d693-1a5b-44e9-ba27-fc4ecca96594 a5a8e590308bc3dd1d2ebddf3e44cc43 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.WGS.T.hg38 C3L-02961 LUAD WGS tumor CPT0196950006 a32ad1ee-0504-4bcf-93e1-6f4156fe9ed7_wgs_gdc_realn.bam 101775809061 BAM harmonized CPTAC3 d4855b3b-d2bf-44ed-a8da-936c827a9bd6 93c551de551bd2b3931f75a0d23d34eb {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.WXS.A C3L-02961 LUAD WXS tissue_normal CPT0196960006 CPT0196960006.WholeExome.RP-1303.bam 27907076300 BAM submitted_aligned CPTAC3 b40fbc45-c3e7-45e7-991d-7a6a8dde5b9f 6df7d40e93441bcfa8615ef28cad8ce2 {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.WXS.A.hg38 C3L-02961 LUAD WXS tissue_normal CPT0196960006 0c81e2f8-7f99-440b-adfe-562c0b2e39fa_wxs_gdc_realn.bam 38625341502 BAM harmonized CPTAC3 49c6b143-af4d-46a0-8e90-580fa4d388cb 31526cebd72a6528b453b66dc034f1be {"aliquot_tag": "ALQ_320f64c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02961.WXS.N C3L-02961 LUAD WXS blood_normal CPT0197800002 CPT0197800002.WholeExome.RP-1303.bam 21129750720 BAM submitted_aligned CPTAC3 c89f6d35-04ff-4b4a-9f65-df8719a3f7d5 ee99bf3f739a562803b8f71305da383d {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02961.WXS.N.hg38 C3L-02961 LUAD WXS blood_normal CPT0197800002 c1c3c1de-a5f4-431c-8fa8-bd974fe429d8_wxs_gdc_realn.bam 29061613805 BAM harmonized CPTAC3 f23ca910-722d-4d32-888e-7c69f63737ad ce9b1ff450f2881102a0fa4826ad5853 {"aliquot_tag": "ALQ_d7098d6a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02961.WXS.T C3L-02961 LUAD WXS tumor CPT0196950006 CPT0196950006.WholeExome.RP-1303.bam 22846837840 BAM submitted_aligned CPTAC3 b1563dcf-77fe-4c3b-99d9-4a217fdeef76 91d5236eb1fa9fa9c763be02e188d3f8 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02961.WXS.T.hg38 C3L-02961 LUAD WXS tumor CPT0196950006 a32ad1ee-0504-4bcf-93e1-6f4156fe9ed7_wxs_gdc_realn.bam 31770273638 BAM harmonized CPTAC3 9e41f283-126c-40ae-a797-14cc7d39bd95 e63de3dd47f5f53a0ca1bccec391bbd3 {"aliquot_tag": "ALQ_75af1e12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.MethArray.Green.A C3L-02963 LSCC Methylation_Array tissue_normal CPT0197100009 203219640160_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8dfe43a0-7230-44de-be52-b62ca4eb8566 83a3e5b22fa1451827dc781a9b3d0f9d {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.MethArray.Green.T C3L-02963 LSCC Methylation_Array tumor CPT0197090009 203219650174_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 70f890b6-aff7-4f97-ae72-5e2152dfb8cd 7b41a141c65d44bc3b516c0025064f8e {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.MethArray.Red.A C3L-02963 LSCC Methylation_Array tissue_normal CPT0197100009 203219640160_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6fa549ff-b89f-4c86-a09d-4f9195dbd2f1 8cf88a9a16f5845c6b8b665ef1bb2b4b {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.MethArray.Red.T C3L-02963 LSCC Methylation_Array tumor CPT0197090009 203219650174_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 e6c94569-2d30-4d9b-a6f0-e6f2575650c6 8d7501214261c813d6a96f0cd8bb7559 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.miRNA-Seq.A.hg38 C3L-02963 LSCC miRNA-Seq tissue_normal CPT0197100006 31287709-20ac-4994-b767-5e4033245c67_mirnaseq_gdc_realn.bam 277436104 BAM harmonized CPTAC3 db622b29-b43b-413f-8310-a38469731d99 5007252bbb82b44c6ea116c4c3dd0651 {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.miRNA-Seq.S20_L003_R1.T C3L-02963 LSCC miRNA-Seq tumor CPT0197090006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGGCC_S20_L003_R1_001.unaln.bam 195156114 BAM S20_L003_R1 submitted_unaligned CPTAC3 1c49d075-fa9b-4e5d-a7c7-137c57366f7c 16abe6e1d8f83d023497c776bc54d4c2 {"aliquot_tag": "ALQ_3127a96f", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.miRNA-Seq.S47_L004_R1.A C3L-02963 LSCC miRNA-Seq tissue_normal CPT0197100006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGGCA_S47_L004_R1_001.unaln.bam 246280280 BAM S47_L004_R1 submitted_unaligned CPTAC3 83b1cfed-dfa8-4a7a-bc48-e48800dee329 d76e00ecd8f79991dbc29503a7ec4fd7 {"aliquot_tag": "ALQ_f76b18bb", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.miRNA-Seq.T.hg38 C3L-02963 LSCC miRNA-Seq tumor CPT0197090006 bd5a2c49-5563-413a-955d-cd4815f039f6_mirnaseq_gdc_realn.bam 211845559 BAM harmonized CPTAC3 82ff0ed5-490f-47ab-8346-e4d0133290c7 c5682623c835a472ded1563731f0795c {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.RNA-Seq.chimeric.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.chimeric.gdc_realn.bam 108021122 BAM chimeric harmonized CPTAC3 a66db302-c030-4c66-8c9f-5071f93008b9 718f9775b650d63e35becdbcdf3504fc {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.RNA-Seq.chimeric.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.chimeric.gdc_realn.bam 94339648 BAM chimeric harmonized CPTAC3 e84fffbc-adc6-4d86-aa73-c4cbcf38b686 a2c27232d0aa903d7ccd3bb522eec1ac {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.RNA-Seq.genomic.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.genomic.gdc_realn.bam 8198633178 BAM genomic harmonized CPTAC3 87a66698-57fd-4c87-a67b-df1638f37c89 3939783ee138ab5f1ca44f94baeb5883 {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.RNA-Seq.genomic.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.genomic.gdc_realn.bam 8010242159 BAM genomic harmonized CPTAC3 f2cc4b91-cc6d-4312-a987-f3cafd1477ef 0c27ec6bd33665033ce78e6523cd888c {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.RNA-Seq.S20_L005_R1.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3362326554 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 9ed7af65-3342-43c4-be81-f609625b6153 679cbde74712996bd7c1d353ac3a0070 {"aliquot_tag": "ALQ_f76b18bb", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.RNA-Seq.S20_L005_R2.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 3588435842 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 25e91e4f-a859-48cb-ab59-0a0886ca1850 85076ea04e9f7b1f15af0c2ddaef6097 {"aliquot_tag": "ALQ_f76b18bb", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.RNA-Seq.S30_L006_R1.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R1_001.fastq.gz 3421272162 FASTQ S30_L006_R1 submitted_unaligned CPTAC3 c34ead20-5eb9-48b5-aef8-ce1542b51292 e87986e430bae3be2589394259fbde26 {"aliquot_tag": "ALQ_3127a96f", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.RNA-Seq.S30_L006_R2.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R2_001.fastq.gz 3611986950 FASTQ S30_L006_R2 submitted_unaligned CPTAC3 07f8ab30-2bea-4757-ae30-54cc3cf7e852 b2c6f467f52d6297bdc4d77827eb0f66 {"aliquot_tag": "ALQ_3127a96f", "sample": "S30", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.RNA-Seq.transcriptome.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.transcriptome.gdc_realn.bam 8633239144 BAM transcriptome harmonized CPTAC3 d70ddddb-8816-4917-b2b8-00bf33882305 c3b12506e76a9f1d11836420dc27bb71 {"aliquot_tag": "ALQ_f76b18bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.RNA-Seq.transcriptome.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.transcriptome.gdc_realn.bam 9754607375 BAM transcriptome harmonized CPTAC3 3f065edc-b6cd-4899-a0ff-059ab6704dd8 65fd35a0b4b753e7fc6d962499ffc40e {"aliquot_tag": "ALQ_3127a96f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.WGS.A C3L-02963 LSCC WGS tissue_normal CPT0197100009 CPT0197100009.WholeGenome.RP-1303.bam 56969060954 BAM submitted_aligned CPTAC3 e2f86765-b9bd-47db-b47b-2b8155fbfae5 7bbe1d492aa6180d981b8025ce06836a {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.WGS.A.hg38 C3L-02963 LSCC WGS tissue_normal CPT0197100009 20097d24-a552-4d2a-b448-783b6d1a22b6_wgs_gdc_realn.bam 82234644249 BAM harmonized CPTAC3 6623be12-a9f6-4f11-b27b-59c7824ae48a 465424419a7d247a239bb7c9110a5b13 {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.WGS.N C3L-02963 LSCC WGS blood_normal CPT0197830002 CPT0197830002.WholeGenome.RP-1303.bam 64814983970 BAM submitted_aligned CPTAC3 10182c03-c277-4ab2-9d30-266b5a88b359 894a40dfd23731f0c2ecdfd53301d4fb {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02963.WGS.N.hg38 C3L-02963 LSCC WGS blood_normal CPT0197830002 d2eb2c7d-21e6-4bbd-b56e-5dd987c3cf88_wgs_gdc_realn.bam 93217700054 BAM harmonized CPTAC3 8016d2ee-3e26-4e8f-8084-fe3500f137f9 866fb7a5197e44520a9fcab6d821c5ec {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02963.WGS.T C3L-02963 LSCC WGS tumor CPT0197090009 CPT0197090009.WholeGenome.RP-1303.bam 71746423658 BAM submitted_aligned CPTAC3 dcda9b5c-791f-4be9-81e5-18e0bbb9cac8 f01462c02404ef9be89c4860202d8a78 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.WGS.T.hg38 C3L-02963 LSCC WGS tumor CPT0197090009 85b7bdbb-a618-4313-8c74-e456b77e87c7_wgs_gdc_realn.bam 103002752943 BAM harmonized CPTAC3 199340d1-43e3-4722-b6dd-0a2d45d16d11 58ae261c6c4e45b6981a6c8c4474c392 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.WXS.A C3L-02963 LSCC WXS tissue_normal CPT0197100009 CPT0197100009.WholeExome.RP-1303.bam 34020578744 BAM submitted_aligned CPTAC3 28840049-011d-4887-a0df-36bc3a501336 b6c9cef3d2c3220d2dc8803d4168da8f {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.WXS.A.hg38 C3L-02963 LSCC WXS tissue_normal CPT0197100009 20097d24-a552-4d2a-b448-783b6d1a22b6_wxs_gdc_realn.bam 45802336443 BAM harmonized CPTAC3 cc06d4e2-99a9-4889-9a8b-14e95e86880e b675fac5ab4d420c93a1f1f062f7103c {"aliquot_tag": "ALQ_67d4052a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02963.WXS.N C3L-02963 LSCC WXS blood_normal CPT0197830002 CPT0197830002.WholeExome.RP-1303.bam 26870520741 BAM submitted_aligned CPTAC3 7ef702a3-045c-4cf7-a014-1fa448f7820c bbbd51b8445b33affe3c9d9e0fdcec63 {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02963.WXS.N.hg38 C3L-02963 LSCC WXS blood_normal CPT0197830002 d2eb2c7d-21e6-4bbd-b56e-5dd987c3cf88_wxs_gdc_realn.bam 36161276731 BAM harmonized CPTAC3 7af14987-fede-4019-89a3-30af14f759ba e10cd4255c2c15e6cf60630718d6c215 {"aliquot_tag": "ALQ_90a9f7ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02963.WXS.T C3L-02963 LSCC WXS tumor CPT0197090009 CPT0197090009.WholeExome.RP-1303.bam 24613931148 BAM submitted_aligned CPTAC3 96efec24-a427-42bb-8c0d-cd233fb83d67 6b710d88c4914488e50a782044b31e51 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02963.WXS.T.hg38 C3L-02963 LSCC WXS tumor CPT0197090009 85b7bdbb-a618-4313-8c74-e456b77e87c7_wxs_gdc_realn.bam 32767503611 BAM harmonized CPTAC3 740272e7-44af-4ec9-a3e1-50dd4f3518f1 12d24678ebef11166168f77a8ebcc455 {"aliquot_tag": "ALQ_a198b4fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.MethArray.Green.A C3L-02964 LSCC Methylation_Array tissue_normal CPT0197380009 203219670019_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ec5b2269-814a-4fb4-a0c9-2e168b958f95 85f2d43b874ae7d1915991b35f9391b0 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.MethArray.Green.T C3L-02964 LSCC Methylation_Array tumor CPT0197210006 203219650004_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 37ebd557-3210-4195-ab9e-27803e7133e9 b64062216a2804bece13eac0fba75560 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.MethArray.Red.A C3L-02964 LSCC Methylation_Array tissue_normal CPT0197380009 203219670019_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 cd3e7aa8-1e7f-455e-bedd-5f97138b86ec 447ee07cc29eb863a79418976fda3517 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.MethArray.Red.T C3L-02964 LSCC Methylation_Array tumor CPT0197210006 203219650004_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 e68887a0-50ff-4214-a58e-825dcfee8462 2642e928fbd570bcb5165bb43f95d0a1 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.miRNA-Seq.A.hg38 C3L-02964 LSCC miRNA-Seq tissue_normal CPT0197380006 5f3f7e35-2ceb-4bad-aa18-cc7b0cb5b6c5_mirnaseq_gdc_realn.bam 200000830 BAM harmonized CPTAC3 62ba7e13-10b1-4b26-aa64-70d99601f3cf fbadc8ed2fb477ca7f0ca76934bac0c8 {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.miRNA-Seq.S30_L004_R1.T C3L-02964 LSCC miRNA-Seq tumor CPT0197210009 181219_UNC31-K00269_0173_BHYGJJBBXX_CACGAT_S30_L004_R1_001.unaln.bam 190775166 BAM S30_L004_R1 submitted_unaligned CPTAC3 a743dba8-6060-4bac-afea-1bd00f315e1d c6b486b99b6631b0528b285416b31d18 {"aliquot_tag": "ALQ_dc205e34", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.miRNA-Seq.S40_L004_R1.A C3L-02964 LSCC miRNA-Seq tissue_normal CPT0197380006 181219_UNC31-K00269_0173_BHYGJJBBXX_GACGAC_S40_L004_R1_001.unaln.bam 177791361 BAM S40_L004_R1 submitted_unaligned CPTAC3 2a6ae4b7-b21b-46fa-b730-f84648aec6f4 99701633fc68d96d4dbad3ec7447bed8 {"aliquot_tag": "ALQ_8ad3f271", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.miRNA-Seq.T.hg38 C3L-02964 LSCC miRNA-Seq tumor CPT0197210009 45517893-4884-46fc-923f-f03fc82cdc20_mirnaseq_gdc_realn.bam 207783643 BAM harmonized CPTAC3 41646b04-4219-4397-97a4-26babf1a0af9 81391050918a5ce2932f34757a211b60 {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.RNA-Seq.chimeric.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.chimeric.gdc_realn.bam 115958371 BAM chimeric harmonized CPTAC3 68eb45d6-0385-4481-9874-c751ca6f9c63 ca4afb47d676e4d957355aa54f5553c9 {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.RNA-Seq.chimeric.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.chimeric.gdc_realn.bam 195956383 BAM chimeric harmonized CPTAC3 d2ce5a52-dfad-4f7a-a43f-a1c3ba572dcd 2477b06244d3eaa25fb37e06ec49d7e3 {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.RNA-Seq.genomic.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.genomic.gdc_realn.bam 9505753062 BAM genomic harmonized CPTAC3 25420204-d26c-4209-8e71-059804aea046 3f734c9f4f881d5667ccfdef338f9d73 {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.RNA-Seq.genomic.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.genomic.gdc_realn.bam 8140981371 BAM genomic harmonized CPTAC3 b99a7247-1ac7-4403-bc90-cdccef5f454f 8b25c0dde6fdb7d35be73bbe56b21cdb {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.RNA-Seq.S1_L001_R1.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3331836713 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 0e4a24f6-ddd1-451e-a9ef-e9f49e685cd8 92a27742d899ed6c36b4f34490de454d {"aliquot_tag": "ALQ_dc205e34", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.RNA-Seq.S1_L001_R2.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R2_001.fastq.gz 3672437349 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 aa6beb8f-cdd3-4185-9b2c-0590b814980d 4c23069a4babdd17eb2e6a53109a67cf {"aliquot_tag": "ALQ_dc205e34", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.RNA-Seq.S23_L007_R1.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R1_001.fastq.gz 4514200502 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 6693c8a1-f9d6-4ff3-b904-6956c6663a19 06c86ec29b1600f678d21254763fdda1 {"aliquot_tag": "ALQ_8ad3f271", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.RNA-Seq.S23_L007_R2.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R2_001.fastq.gz 4656197876 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 b3dd5ec6-e199-4959-ac8e-a722c0ef9784 37261c5e40be54b68eb70bb6e43d28d5 {"aliquot_tag": "ALQ_8ad3f271", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.RNA-Seq.transcriptome.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.transcriptome.gdc_realn.bam 13230782160 BAM transcriptome harmonized CPTAC3 499d28ee-4d16-494f-8129-37670f072d92 8bd777ab70d7c29af556dfb2b0485a1a {"aliquot_tag": "ALQ_8ad3f271", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.RNA-Seq.transcriptome.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.transcriptome.gdc_realn.bam 8469594906 BAM transcriptome harmonized CPTAC3 838abb22-7d1d-4f3d-b957-e106267287a2 d26555e697c7459770736aa956a9bbc6 {"aliquot_tag": "ALQ_dc205e34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.WGS.A C3L-02964 LSCC WGS tissue_normal CPT0197380009 CPT0197380009.WholeGenome.RP-1303.bam 63916710229 BAM submitted_aligned CPTAC3 6ab20263-8a1e-41b7-ba50-0b53763bd588 cc2d94a68347eea3aaa758d1b6d60890 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.WGS.A.hg38 C3L-02964 LSCC WGS tissue_normal CPT0197380009 6271eedd-fa77-49ab-b900-e35c35ef9756_wgs_gdc_realn.bam 92480773424 BAM harmonized CPTAC3 66040048-17aa-48eb-95db-ed03a65d10a3 fc37ae5cf6d0fa768685ea018d845138 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.WGS.N C3L-02964 LSCC WGS blood_normal CPT0199140002 CPT0199140002.WholeGenome.RP-1303.bam 58715998067 BAM submitted_aligned CPTAC3 76d294cc-e6c7-4357-af87-72d474860117 664d4872a20da2bb6d916260d5aef71c {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02964.WGS.N.hg38 C3L-02964 LSCC WGS blood_normal CPT0199140002 dec8fef6-3592-4fb4-b0e0-5ade153deb94_wgs_gdc_realn.bam 85170591679 BAM harmonized CPTAC3 a90895bc-ccad-45a0-82bf-61a5687c0fef c0a79b220eb26e69f67ddc4fe14a1a6b {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02964.WGS.T C3L-02964 LSCC WGS tumor CPT0197210006 CPT0197210006.WholeGenome.RP-1303.bam 59039323289 BAM submitted_aligned CPTAC3 52351f2f-21e3-4aa4-b1c7-60559224902c aac3e97c35ae094158b319ebfb02e982 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.WGS.T.hg38 C3L-02964 LSCC WGS tumor CPT0197210006 4fafc3a0-d12b-49b5-94ed-8c778bf2901e_wgs_gdc_realn.bam 85276436807 BAM harmonized CPTAC3 e5502135-f4bc-4db5-8cec-1f7e3c72b97d 47aeb31371606feee78fff04dc2334ee {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.WXS.A C3L-02964 LSCC WXS tissue_normal CPT0197380009 CPT0197380009.WholeExome.RP-1303.bam 21894662765 BAM submitted_aligned CPTAC3 086e7790-2876-4bd8-be09-08bb9da039c3 b8517bb3f770efedbb9845e0551f7712 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.WXS.A.hg38 C3L-02964 LSCC WXS tissue_normal CPT0197380009 6271eedd-fa77-49ab-b900-e35c35ef9756_wxs_gdc_realn.bam 29536568445 BAM harmonized CPTAC3 ad7da79f-e246-440e-b348-d9b5b153ddf7 7b5a8d975ed65d9a6b63dfacddc06684 {"aliquot_tag": "ALQ_1a6cefe0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02964.WXS.N C3L-02964 LSCC WXS blood_normal CPT0199140002 CPT0199140002.WholeExome.RP-1303.bam 27671906019 BAM submitted_aligned CPTAC3 3ba02d74-cc0a-4389-9ff2-d0ec44744b81 82c8d94dcc163f40b5de25d7f25cb4df {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02964.WXS.N.hg38 C3L-02964 LSCC WXS blood_normal CPT0199140002 dec8fef6-3592-4fb4-b0e0-5ade153deb94_wxs_gdc_realn.bam 37590415541 BAM harmonized CPTAC3 fe1700a9-ae84-45d9-9932-91f0ecd566f7 5df4286d7543db303522eefbe25b93be {"aliquot_tag": "ALQ_55b9013f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02964.WXS.T C3L-02964 LSCC WXS tumor CPT0197210006 CPT0197210006.WholeExome.RP-1303.bam 25486980267 BAM submitted_aligned CPTAC3 2a557be3-8d84-464a-9376-f66cf51cb2f8 eb2c849dd0f9e179ecd6308fafe57495 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02964.WXS.T.hg38 C3L-02964 LSCC WXS tumor CPT0197210006 4fafc3a0-d12b-49b5-94ed-8c778bf2901e_wxs_gdc_realn.bam 34760862674 BAM harmonized CPTAC3 a3738c39-d74c-438a-a367-2240ccada09c 9d8f2fc50543c09840713b570d025507 {"aliquot_tag": "ALQ_4c9f43a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.MethArray.Green.A C3L-02967 LUAD Methylation_Array tissue_normal CPT0218500006 203561450062_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 61f93e0f-c56d-4017-88c6-6c9dcb5aee13 a21fea21c16a3096732880e9a7bb1b83 {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.MethArray.Green.T C3L-02967 LUAD Methylation_Array tumor CPT0218490006 203561620132_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3234f349-4635-493f-82d5-05769db373dc 2e7c83357a8a7935877e49391d97c5ac {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.MethArray.Red.A C3L-02967 LUAD Methylation_Array tissue_normal CPT0218500006 203561450062_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 f84531d7-4d11-4a9a-b4d6-57bd5cd03139 ddff88a6489d3c5f1d67b8b5e820f5cc {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.MethArray.Red.T C3L-02967 LUAD Methylation_Array tumor CPT0218490006 203561620132_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 e4ad1a31-d4c6-4226-a9d4-e679d1a8aa97 e6a6a91849db1e38cf4c2897dad8c966 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.miRNA-Seq.A.hg38 C3L-02967 LUAD miRNA-Seq tissue_normal CPT0218500009 00700717-7b35-48d5-acf7-1902dc2d7b2b_mirnaseq_gdc_realn.bam 208942259 BAM harmonized CPTAC3 369c9649-fff8-41b2-add9-8dc31fe4fb3c 8d1fa018077cc342db868b2075c850dd {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.miRNA-Seq.S11_L005_R1.T C3L-02967 LUAD miRNA-Seq tumor CPT0218490009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGTCA_S11_L005_R1_001.unaln.bam 196211259 BAM S11_L005_R1 submitted_unaligned CPTAC3 fd931b3c-dc4b-4347-9e64-7bae6680fbe0 113e35f91854a9d98f51d9d8c0af72b5 {"aliquot_tag": "ALQ_2629a171", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.miRNA-Seq.S27_L007_R1.A C3L-02967 LUAD miRNA-Seq tissue_normal CPT0218500009 190712_UNC32-K00270_0192_BH7HL3BBXY_TGACCA_S27_L007_R1_001.unaln.bam 178170265 BAM S27_L007_R1 submitted_unaligned CPTAC3 76ac7641-f3e3-43a9-a64d-58caf01bb4e6 f05875094a7ce2a3b0169152d7d7d49a {"aliquot_tag": "ALQ_e06510a5", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.miRNA-Seq.T.hg38 C3L-02967 LUAD miRNA-Seq tumor CPT0218490009 8ee77852-ed97-4596-bf5a-ab92559ac741_mirnaseq_gdc_realn.bam 212457070 BAM harmonized CPTAC3 94819d20-a95f-4b98-8aae-c6c6a1e61a7c af56f59c0fdd7fcdea5a2750d06c699a {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.RNA-Seq.chimeric.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.chimeric.gdc_realn.bam 41469820 BAM chimeric harmonized CPTAC3 449b94c0-47db-4d75-b6dd-2bd10ee066f2 c670c7f2461941c224eb72392af81b51 {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.RNA-Seq.chimeric.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.chimeric.gdc_realn.bam 34962000 BAM chimeric harmonized CPTAC3 fec81d1a-bf90-45cb-9358-1fe0cd66425e 89da451a78bb69b98f2a1f6a273a5081 {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.RNA-Seq.genomic.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.genomic.gdc_realn.bam 11807848963 BAM genomic harmonized CPTAC3 d0c6d64b-b80c-4796-b25d-619e5ea3a2a5 00f80fcf2a2bbfae2bec9dd277c0c801 {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.RNA-Seq.genomic.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.genomic.gdc_realn.bam 12177490984 BAM genomic harmonized CPTAC3 ccb95db5-f7f3-4459-9a79-7e6038289f07 41fe9f113cddc1eec9ba67244251422a {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.RNA-Seq.S10_L003_R1.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R1_001.fastq.gz 4161878553 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 2cf2a401-36f9-49ac-87f6-125f89c26268 be8fa5c3365c5cad6d1cd44bbeb7f1b9 {"aliquot_tag": "ALQ_2629a171", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.RNA-Seq.S10_L003_R2.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R2_001.fastq.gz 4413973501 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 ff3cb211-2b49-4377-8d4a-e4c59c5ba8cf f5b95b2ab00b4fdc9dba8cc6fae19151 {"aliquot_tag": "ALQ_2629a171", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.RNA-Seq.S21_L006_R1.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R1_001.fastq.gz 4406019809 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 ab5129cc-bf87-45e1-b6d3-6bf0f788da3b c5713abf65be689017412a5b649b103b {"aliquot_tag": "ALQ_e06510a5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.RNA-Seq.S21_L006_R2.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R2_001.fastq.gz 4588269752 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 802a81dc-79d1-4070-be3c-98ce862c5549 cfa7f35ed8dad53586e1996902f5d507 {"aliquot_tag": "ALQ_e06510a5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.RNA-Seq.transcriptome.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.transcriptome.gdc_realn.bam 9010568866 BAM transcriptome harmonized CPTAC3 1e147efc-f6ec-45c9-9677-2de00cf9193d 38bb7f667adb6c3b05378b48df323c3d {"aliquot_tag": "ALQ_e06510a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.RNA-Seq.transcriptome.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.transcriptome.gdc_realn.bam 8574099551 BAM transcriptome harmonized CPTAC3 ab5b3555-b651-41ec-8a78-f9fb6bbd377c 18dc38eeb709937326889795fa746ed5 {"aliquot_tag": "ALQ_2629a171", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.WGS.N C3L-02967 LUAD WGS blood_normal CPT0219900002 CPT0219900002.WholeGenome.RP-1303.bam 70923878346 BAM submitted_aligned CPTAC3 267e36a1-282a-4262-9db3-fb57c90b369a 0b111f1ac1d9c65d6f52b15c25b5b502 {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02967.WGS.N.hg38 C3L-02967 LUAD WGS blood_normal CPT0219900002 1a7cb785-23a5-4eb8-9a8a-9ba39041f794_wgs_gdc_realn.bam 103401256299 BAM harmonized CPTAC3 b4d0c158-330c-4f44-99ec-ddf8f5a8ef41 def78d4aac442b986194f8599c175a04 {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02967.WGS.T C3L-02967 LUAD WGS tumor CPT0218490006 CPT0218490006.WholeGenome.RP-1303.bam 59685349666 BAM submitted_aligned CPTAC3 00173aa1-95fe-4baa-bc9b-7fa4f91a5c41 fd54f4e8502f29a033b8d3d91eb86f92 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.WGS.T.hg38 C3L-02967 LUAD WGS tumor CPT0218490006 5b10df83-32cd-4037-a8c7-108a0db69540_wgs_gdc_realn.bam 87123504863 BAM harmonized CPTAC3 56cf039d-0b49-4bb9-826d-885242df57f3 257b8bc75ac06d6d22ef8dcf929cd6e7 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.WXS.A C3L-02967 LUAD WXS tissue_normal CPT0218500006 CPT0218500006.WholeExome.RP-1303.bam 24680757628 BAM submitted_aligned CPTAC3 1a6f3471-a23d-4dda-b353-0aa9320a672a 21c58fbbe69d344b559d30f581cca228 {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.WXS.A.hg38 C3L-02967 LUAD WXS tissue_normal CPT0218500006 fff5f229-c510-4b99-8b44-b302fb895f43_wxs_gdc_realn.bam 34306887372 BAM harmonized CPTAC3 1faa1dcc-5a30-4f5d-9967-8336721a39a0 9143ffe9cf7c3c5f4be2be1a71f132b3 {"aliquot_tag": "ALQ_70da0d34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02967.WXS.N C3L-02967 LUAD WXS blood_normal CPT0219900002 CPT0219900002.WholeExome.RP-1303.bam 26610349618 BAM submitted_aligned CPTAC3 0aab5eb2-9fb4-491c-a619-9e6ba2e624c7 63b62803c4186dde2aeb10cb9752df2f {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02967.WXS.N.hg38 C3L-02967 LUAD WXS blood_normal CPT0219900002 1a7cb785-23a5-4eb8-9a8a-9ba39041f794_wxs_gdc_realn.bam 36836328732 BAM harmonized CPTAC3 8f4a8c80-8bee-45bf-b28f-7e29840c65e6 6908f1471da3ac86d9aa7fe1c474d0a8 {"aliquot_tag": "ALQ_a60202e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02967.WXS.T C3L-02967 LUAD WXS tumor CPT0218490006 CPT0218490006.WholeExome.RP-1303.bam 27309051326 BAM submitted_aligned CPTAC3 f62c1c46-2cb1-4b18-8e0e-3134b0810c0f 603b51540a7d4b3344c39453d816a984 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02967.WXS.T.hg38 C3L-02967 LUAD WXS tumor CPT0218490006 5b10df83-32cd-4037-a8c7-108a0db69540_wxs_gdc_realn.bam 37917467236 BAM harmonized CPTAC3 5b8654df-1722-4c07-b5f5-18aae3daf35c 416b4873a6fe28f6745b844d6235bfe4 {"aliquot_tag": "ALQ_b696bce0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.MethArray.Green.A C3L-02968 LSCC Methylation_Array tissue_normal CPT0196820009 203220070151_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 69bd3b07-f440-469e-b2e9-6e529818bdf0 f1571fb906e6dd4310dd9184803e99e9 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.MethArray.Green.T C3L-02968 LSCC Methylation_Array tumor CPT0196810009 203219650006_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 aa4c87c2-bc13-449c-b213-8e9d947dfc18 a86efe508463f45275c2414b1cbbc03f {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.MethArray.Red.A C3L-02968 LSCC Methylation_Array tissue_normal CPT0196820009 203220070151_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 a5b13522-3daf-4a84-89dd-d990f0f56880 e050c91cbcf0a8e77259623d1439d582 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.MethArray.Red.T C3L-02968 LSCC Methylation_Array tumor CPT0196810009 203219650006_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 4167e0e9-f032-4e86-9871-ad89f23475b1 7b9efa5f06d82747a45db49f33b3a8be {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.miRNA-Seq.A.hg38 C3L-02968 LSCC miRNA-Seq tissue_normal CPT0196820006 52cac0fc-fe8e-417f-b7d2-3e796a6339ed_mirnaseq_gdc_realn.bam 332688041 BAM harmonized CPTAC3 7bf56167-57bc-4db3-8ea4-2972f7c14805 80df26b2c50ce62aced877bb6fbdff68 {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.miRNA-Seq.S18_L003_R1.T C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTCCGC_S18_L003_R1_001.unaln.bam 155660988 BAM S18_L003_R1 submitted_unaligned CPTAC3 3d100197-9e71-45bd-962a-b12bef470313 40ec72cf9258f0f4b848546c72cc0cf5 {"aliquot_tag": "ALQ_4b736b77", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.miRNA-Seq.S18_L007_R1.T C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L007_R1_001.unaln.bam 134076490 BAM S18_L007_R1 submitted_unaligned CPTAC3 a13af603-73ce-4ed0-9dc2-20cf609a7397 f80806970aab4e2da6e43029bbd567f4 {"aliquot_tag": "ALQ_4b736b77", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.miRNA-Seq.S46_L004_R1.A C3L-02968 LSCC miRNA-Seq tissue_normal CPT0196820006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGAAG_S46_L004_R1_001.unaln.bam 295941591 BAM S46_L004_R1 submitted_unaligned CPTAC3 3f14de1b-839a-407d-a007-1a3d0dddddac 2577b8604eb104376ef2d260560f73ac {"aliquot_tag": "ALQ_cd311a7", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.miRNA-Seq.T.hg38 C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 04764cfc-654c-4d24-b176-b28898f2e3a7_mirnaseq_gdc_realn.bam 338669728 BAM harmonized CPTAC3 1269eb51-6dca-4f60-9059-abc4dd73020d 33ce6c0ccf39f746fad94e7e1ce39f23 {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.RNA-Seq.chimeric.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.chimeric.gdc_realn.bam 280854105 BAM chimeric harmonized CPTAC3 9ec456cc-bed6-4f87-b2f9-be9861b722e4 bf78e1a11433107e2b5c91ba80f4522a {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.RNA-Seq.chimeric.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.chimeric.gdc_realn.bam 136149334 BAM chimeric harmonized CPTAC3 9482471a-3346-4f21-8a69-ee5c467c5537 a4990d6210376b36f9060f9f7b78a100 {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.RNA-Seq.genomic.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.genomic.gdc_realn.bam 6420436507 BAM genomic harmonized CPTAC3 9d973214-1d07-4181-bd6f-8b2f7670e48c e3ec53f11738258d5451c34d20c5ed23 {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.RNA-Seq.genomic.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.genomic.gdc_realn.bam 7924451798 BAM genomic harmonized CPTAC3 1da9890d-7079-4ed9-805e-0f3f5d717317 cde5941ee945677a822c616eb8f78fdd {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.RNA-Seq.S17_L005_R1.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R1_001.fastq.gz 2860490376 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 d0c31960-1ba0-4298-afba-1608f1298487 2839a9087d9752446a5fee4cdcec9523 {"aliquot_tag": "ALQ_cd311a7", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.RNA-Seq.S17_L005_R2.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R2_001.fastq.gz 3220097960 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 a7bfcb14-c8f7-45ea-9e19-e328231fdbd6 b342626a5b1b525ad9373b8068ed3e67 {"aliquot_tag": "ALQ_cd311a7", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.RNA-Seq.S28_L006_R1.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R1_001.fastq.gz 3592707828 FASTQ S28_L006_R1 submitted_unaligned CPTAC3 29d21104-d9a2-4a45-8b43-c10348d1cf81 9d122ae58ada7d8c3f39dd5a3471d7a2 {"aliquot_tag": "ALQ_4b736b77", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.RNA-Seq.S28_L006_R2.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R2_001.fastq.gz 3696351903 FASTQ S28_L006_R2 submitted_unaligned CPTAC3 86c676c8-2d55-4918-a124-7a26d394a401 827138cd7bd6448f1bef18cc790f5e0b {"aliquot_tag": "ALQ_4b736b77", "sample": "S28", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.RNA-Seq.transcriptome.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.transcriptome.gdc_realn.bam 7020119582 BAM transcriptome harmonized CPTAC3 00904565-9953-412f-9d55-4ff719afbc5b bd1af0fcc74a438e8ab5989378f20eda {"aliquot_tag": "ALQ_cd311a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.RNA-Seq.transcriptome.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.transcriptome.gdc_realn.bam 10136678376 BAM transcriptome harmonized CPTAC3 161cc3fd-bc7a-49b4-9580-a4edef738fe8 509e90b20fa25e912d56415f73f479a6 {"aliquot_tag": "ALQ_4b736b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.WGS.A C3L-02968 LSCC WGS tissue_normal CPT0196820009 CPT0196820009.WholeGenome.RP-1303.bam 54195414822 BAM submitted_aligned CPTAC3 69283f94-9de7-4889-a2c8-b6f001553061 2e1115ae92bfe9c1e313bcaff2e0ada3 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.WGS.A.hg38 C3L-02968 LSCC WGS tissue_normal CPT0196820009 1ebfd6b6-905c-49b0-bbae-0914b9b30b55_wgs_gdc_realn.bam 78544372657 BAM harmonized CPTAC3 f51a9e67-53d2-466f-8fc4-37c1581886be 2f935f7ee8320ee185f31e23e2f0fe94 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.WGS.N C3L-02968 LSCC WGS blood_normal CPT0197760002 CPT0197760002.WholeGenome.RP-1303.bam 60272076356 BAM submitted_aligned CPTAC3 cc233f99-f46d-4fb1-af27-22e8b98b51c8 14c1c4a960e1525582181b8376e3b973 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02968.WGS.N.hg38 C3L-02968 LSCC WGS blood_normal CPT0197760002 e610b46f-890b-4983-92e8-8068231b156f_wgs_gdc_realn.bam 87170458713 BAM harmonized CPTAC3 6360b9dc-ba81-4a30-b7e0-4ef9f66ca0ef a18d3f1ecd75bf622c587093cd2a6799 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02968.WGS.T C3L-02968 LSCC WGS tumor CPT0196810009 CPT0196810009.WholeGenome.RP-1303.bam 66386098472 BAM submitted_aligned CPTAC3 ab4c3bdb-cf55-4ae7-ae43-f224c0941654 e8549d31eeeea15ff936f392de2bcde4 {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.WGS.T.hg38 C3L-02968 LSCC WGS tumor CPT0196810009 db738e74-7347-44e7-93c3-128a4de48f7d_wgs_gdc_realn.bam 96292591008 BAM harmonized CPTAC3 dd3d17d3-1c72-46e4-812b-54b8a8133692 2b3fdb74a61fe1f4fb2aefbf28724673 {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.WXS.A C3L-02968 LSCC WXS tissue_normal CPT0196820009 CPT0196820009.WholeExome.RP-1303.bam 40850781307 BAM submitted_aligned CPTAC3 a9393e5d-ec88-4729-a79c-c7daa2f04a4d 213fec0b2b98971e8b999a40988f5d0c {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.WXS.A.hg38 C3L-02968 LSCC WXS tissue_normal CPT0196820009 1ebfd6b6-905c-49b0-bbae-0914b9b30b55_wxs_gdc_realn.bam 56342495074 BAM harmonized CPTAC3 16aa1d7d-2240-47c0-bb6e-8102f0c0e8eb e0cd3a1ed27bb8f441b3c4644820af47 {"aliquot_tag": "ALQ_9c6c0c36", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02968.WXS.N C3L-02968 LSCC WXS blood_normal CPT0197760002 CPT0197760002.WholeExome.RP-1303.bam 29536790624 BAM submitted_aligned CPTAC3 746a6053-7772-4ec9-95c0-c7320bfb9817 96c56b6895586ed4f5abb25565a89bc9 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02968.WXS.N.hg38 C3L-02968 LSCC WXS blood_normal CPT0197760002 e610b46f-890b-4983-92e8-8068231b156f_wxs_gdc_realn.bam 40162952762 BAM harmonized CPTAC3 45d7684e-34ea-4a8e-8125-1af1b198ce24 ad18bebde4f5f784c6a34ab5b08a7d22 {"aliquot_tag": "ALQ_a91fca1f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02968.WXS.T C3L-02968 LSCC WXS tumor CPT0196810009 CPT0196810009.WholeExome.RP-1303.bam 37768661305 BAM submitted_aligned CPTAC3 ead3bd19-5404-4f1c-984d-cf87c2e11058 30b8b2d33f6bed3ebf1c9ea1f2565f6c {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02968.WXS.T.hg38 C3L-02968 LSCC WXS tumor CPT0196810009 db738e74-7347-44e7-93c3-128a4de48f7d_wxs_gdc_realn.bam 52572236594 BAM harmonized CPTAC3 d85db18a-86e2-4a70-b290-245f2e3e3990 e1bb2ddcaa364f903c84e66ce437d063 {"aliquot_tag": "ALQ_dbcc76e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.MethArray.Green.A C3L-02969 LSCC Methylation_Array tissue_normal CPT0217490006 203220070156_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 007f1aba-596f-4d74-8ff7-32834d73baf9 cac66ce8915580b0f56fd2ea46efc30e {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.MethArray.Green.T C3L-02969 LSCC Methylation_Array tumor CPT0217420006 203219640102_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ea717d82-9ca5-4400-b652-4f469bf705d9 375986ac27ea70b66d14a60fe6650358 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.MethArray.Red.A C3L-02969 LSCC Methylation_Array tissue_normal CPT0217490006 203220070156_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5259d8fa-7192-44f9-af26-61d5188e68b4 cc44941e5f0f5a6900c77b2ad99e325a {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.MethArray.Red.T C3L-02969 LSCC Methylation_Array tumor CPT0217420006 203219640102_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 39510eca-1040-4770-9eeb-8a93244f5aae f2014e0db072b0f9ad054f5777e37d28 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.miRNA-Seq.A.hg38 C3L-02969 LSCC miRNA-Seq tissue_normal CPT0217490009 fdee183c-7d27-41ca-a426-ad479f5c11c4_mirnaseq_gdc_realn.bam 218743143 BAM harmonized CPTAC3 d9fa64e0-1ab0-4c24-8a94-e4764adf575f c8b2415e4a93626db9f19269a17cbc94 {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.miRNA-Seq.S22_L003_R1.A C3L-02969 LSCC miRNA-Seq tissue_normal CPT0217490009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAACTA_S22_L003_R1_001.unaln.bam 195568179 BAM S22_L003_R1 submitted_unaligned CPTAC3 d69dec9e-94f2-4212-858b-69c690e26aa1 f109866bfd81ec1a2b9214388aad5ca1 {"aliquot_tag": "ALQ_d061d198", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.miRNA-Seq.S28_L002_R1.T C3L-02969 LSCC miRNA-Seq tumor CPT0217420009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTTTCG_S28_L002_R1_001.unaln.bam 120067914 BAM S28_L002_R1 submitted_unaligned CPTAC3 c4768c5f-90bb-438e-80a8-e5a39b77f610 ee6b082d12f6a2015b0ed12bdd11b3d6 {"aliquot_tag": "ALQ_a7b1e089", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.miRNA-Seq.T.hg38 C3L-02969 LSCC miRNA-Seq tumor CPT0217420009 b5086f1b-67ac-47ec-8d66-ecfed8b01e75_mirnaseq_gdc_realn.bam 135245442 BAM harmonized CPTAC3 3d6adc9a-5a62-4fca-98b9-48af6cc4f809 a5590143bc9bc5a0e8051f53299da95d {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.RNA-Seq.chimeric.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.chimeric.gdc_realn.bam 144928346 BAM chimeric harmonized CPTAC3 b8356575-d6ba-4507-bee6-6521039936f8 e0e64d51cbdbabc23006bb1b33ef201d {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.RNA-Seq.chimeric.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.chimeric.gdc_realn.bam 60883071 BAM chimeric harmonized CPTAC3 50e6668d-b4cd-4e91-874d-461bf8459cff 0d5d08a756bd638ff8a3d8a5491a2cb2 {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.RNA-Seq.genomic.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.genomic.gdc_realn.bam 9212612558 BAM genomic harmonized CPTAC3 d3f0211c-afd9-446c-9659-c3fe869d027e 5ae4033f12e087554442511620f826d6 {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.RNA-Seq.genomic.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.genomic.gdc_realn.bam 9387583543 BAM genomic harmonized CPTAC3 7ba74335-00d7-4d3d-bfb5-a54c15033e36 8a213af4f9abacf736dde599b3e227be {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.RNA-Seq.S5_L002_R1.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 4051135372 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 00c30ef1-0b13-45a4-bf18-0bd9fb05b1c1 53d4ff0e671a08ffec99c94da587321a {"aliquot_tag": "ALQ_d061d198", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.RNA-Seq.S5_L002_R2.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4520283548 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 73df68fc-ee4c-422c-9536-4a2ef378631d c097a31fb31e456a0b4dfb7cd67676df {"aliquot_tag": "ALQ_d061d198", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.RNA-Seq.S6_L007_R1.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R1_001.fastq.gz 4058864935 FASTQ S6_L007_R1 submitted_unaligned CPTAC3 c5db9c66-41b1-485f-a6f3-055e5d3f0d2f e1fd6f45e9fd5a0ee5df2839daab5338 {"aliquot_tag": "ALQ_a7b1e089", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.RNA-Seq.S6_L007_R2.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R2_001.fastq.gz 4540668482 FASTQ S6_L007_R2 submitted_unaligned CPTAC3 a67dc932-9ad9-4edf-a590-9508b9a3c388 64e73d4ac6b809e366219994e685053f {"aliquot_tag": "ALQ_a7b1e089", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.RNA-Seq.transcriptome.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.transcriptome.gdc_realn.bam 9508472661 BAM transcriptome harmonized CPTAC3 d5621990-91e7-4378-a5c0-62776b45c430 2276699e73dfa31e17cba691158cc21b {"aliquot_tag": "ALQ_d061d198", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.RNA-Seq.transcriptome.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.transcriptome.gdc_realn.bam 9823319591 BAM transcriptome harmonized CPTAC3 9351498e-e560-4984-8c04-7dfac0afdfc3 47366f4f2541f0c4ce772c3ee764f438 {"aliquot_tag": "ALQ_a7b1e089", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.WGS.A C3L-02969 LSCC WGS tissue_normal CPT0217490006 CPT0217490006.WholeGenome.RP-1303.bam 52642053650 BAM submitted_aligned CPTAC3 b1ad165f-e9af-455e-a3fa-ebcfd2da093f 8899e71d1a2c63c402d13f9c7b4d7e44 {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.WGS.A.hg38 C3L-02969 LSCC WGS tissue_normal CPT0217490006 49e0f1b2-1114-41d1-b285-78712af47ee3_wgs_gdc_realn.bam 76359229965 BAM harmonized CPTAC3 151f172b-0b80-4b17-b1d8-7944707c380d 4c25299f26251cdf68852cdb2ff62a6b {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.WGS.N C3L-02969 LSCC WGS blood_normal CPT0219800002 CPT0219800002.WholeGenome.RP-1303.bam 59735506753 BAM submitted_aligned CPTAC3 83c201b2-2e8c-4bd1-98cc-6c7cc6faa1a4 c813b1d4f2a88267af5b8a38730c318d {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02969.WGS.N.hg38 C3L-02969 LSCC WGS blood_normal CPT0219800002 0c90e64c-7a0d-44dc-b1a4-1d88d43e1dde_wgs_gdc_realn.bam 88144850145 BAM harmonized CPTAC3 bea6c5f0-48a8-4bdb-b1c7-f5edb92eca84 5082ec493e923df1f8056b91ba1d78ce {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02969.WGS.T C3L-02969 LSCC WGS tumor CPT0217420006 CPT0217420006.WholeGenome.RP-1303.bam 57696602573 BAM submitted_aligned CPTAC3 ec697406-755b-473a-821f-f1e3dea144cd f67a711e41a0413abdff02b95c4358ac {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.WGS.T.hg38 C3L-02969 LSCC WGS tumor CPT0217420006 6fa25117-7dbe-4157-991c-8df8657eda53_wgs_gdc_realn.bam 85683028892 BAM harmonized CPTAC3 fc40bdfe-a0a4-4332-b495-4beb709c8bdd 9ec0085d76d29a1c02188c3813625b76 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.WXS.A C3L-02969 LSCC WXS tissue_normal CPT0217490006 CPT0217490006.WholeExome.RP-1303.bam 26514134139 BAM submitted_aligned CPTAC3 3262840b-5ff1-4f72-8334-5defdeb732ab 64b87f17ff217f35ff679cb91c67872f {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.WXS.A.hg38 C3L-02969 LSCC WXS tissue_normal CPT0217490006 49e0f1b2-1114-41d1-b285-78712af47ee3_wxs_gdc_realn.bam 36206828448 BAM harmonized CPTAC3 338b30ff-093e-448c-8df5-84faaceee12b 651206a7a7c18135fa330c22c4e05321 {"aliquot_tag": "ALQ_40decc09", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-02969.WXS.N C3L-02969 LSCC WXS blood_normal CPT0219800002 CPT0219800002.WholeExome.RP-1303.bam 28829632265 BAM submitted_aligned CPTAC3 4aa055e8-5497-4d5f-aa2a-fdd8c616f2d1 a50045b1e05843194e9e2a72aa04af21 {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02969.WXS.N.hg38 C3L-02969 LSCC WXS blood_normal CPT0219800002 0c90e64c-7a0d-44dc-b1a4-1d88d43e1dde_wxs_gdc_realn.bam 39688928666 BAM harmonized CPTAC3 8dbe033e-6dd6-4d4b-a249-84a116bb801e 29fdb3742a88a7986100ae7e32bb5cd2 {"aliquot_tag": "ALQ_6d5ed147", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02969.WXS.T C3L-02969 LSCC WXS tumor CPT0217420006 CPT0217420006.WholeExome.RP-1303.bam 25256837973 BAM submitted_aligned CPTAC3 5528f1ac-eb88-44f6-b7bf-dead5ca95e78 18a06ef95f5be62cb518116cc8dd2efa {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02969.WXS.T.hg38 C3L-02969 LSCC WXS tumor CPT0217420006 6fa25117-7dbe-4157-991c-8df8657eda53_wxs_gdc_realn.bam 34826510368 BAM harmonized CPTAC3 b99facdb-d15c-4c60-8305-c0554ba68b09 1b1cef96faafd753a677dd2384e4b1a6 {"aliquot_tag": "ALQ_370efd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.MethArray.Green.T C3L-02970 GBM Methylation_Array tumor CPT0217880006 203219670217_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 46dc4cd6-07f4-48b9-8a6d-5bc8cc5dbd89 c03b1c167d31c605bb230df3d719fdc3 {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.MethArray.Red.T C3L-02970 GBM Methylation_Array tumor CPT0217880006 203219670217_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 d6fd8f6c-b621-4a7d-bc15-70f205ef1ec7 a0b466d494729fc5fccc62ea94a563ef {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.miRNA-Seq.S29_L002_R1.T C3L-02970 GBM miRNA-Seq tumor CPT0217880013 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGGCC_S29_L002_R1_001.unaln.bam 185103198 BAM S29_L002_R1 submitted_unaligned CPTAC3 33faf90a-b15f-48bc-93c8-d4bb7d1cb146 eef6ebafc746d284a5abe551ecd527a8 {"aliquot_tag": "ALQ_630de00c", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.miRNA-Seq.T.hg38 C3L-02970 GBM miRNA-Seq tumor CPT0217880013 1e446c25-0f79-4ade-b721-5e713fd0a9f5_mirnaseq_gdc_realn.bam 221070281 BAM harmonized CPTAC3 81d9d599-2f7e-4623-883c-16d56cce8be1 fbaee462724e9db811c25c0522b582b3 {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.RNA-Seq.chimeric.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.chimeric.gdc_realn.bam 73578571 BAM chimeric harmonized CPTAC3 1c7f92a1-a912-482e-96fa-044ba3e74475 2df553e2b7d47ee41d7b6ef0abc74d3b {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.RNA-Seq.genomic.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.genomic.gdc_realn.bam 8057518597 BAM genomic harmonized CPTAC3 766c290c-cd5b-4fbd-a320-5c87c623d74a 7ca553decd22b3bab3763abfc7940e6e {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.RNA-Seq.S4_L001_R1.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3532091453 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 0575a3ab-ff1b-430d-b198-d5fcbec93b3d 63b06b37b50aea2e9fc36960c9b74cf2 {"aliquot_tag": "ALQ_630de00c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.RNA-Seq.S4_L001_R2.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4011276075 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 f099332e-d453-47ee-a342-6e94fde94579 beff93636de8ec37e944a0360c0e81db {"aliquot_tag": "ALQ_630de00c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.RNA-Seq.transcriptome.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.transcriptome.gdc_realn.bam 8446548198 BAM transcriptome harmonized CPTAC3 5a2df5d1-fd95-4a86-819d-6f82e548c4dc 6648da50cd6d59e6f8956a40440bbce4 {"aliquot_tag": "ALQ_630de00c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.WGS.N C3L-02970 GBM WGS blood_normal CPT0219880002 CPT0219880002.WholeGenome.RP-1303.bam 60078628961 BAM submitted_aligned CPTAC3 6b88503d-132d-4d1e-bc97-11b3050a469c 1768d604f78ea481f7c59f1579f8b9e4 {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02970.WGS.N.hg38 C3L-02970 GBM WGS blood_normal CPT0219880002 61b7727d-fa5b-4787-8df0-c1c0e0662f06_wgs_gdc_realn.bam 88065989978 BAM harmonized CPTAC3 6e191426-5a5f-4ae1-8f35-4abfe09561ca 3acbe75d67bdfda7138c1df1958fcf9e {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02970.WGS.T C3L-02970 GBM WGS tumor CPT0217880006 CPT0217880006.WholeGenome.RP-1303.bam 57695348223 BAM submitted_aligned CPTAC3 317146df-ce2c-4d46-9b22-91ccef66e6c9 d0216cd37e5d5586f4ae463899799067 {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.WGS.T.hg38 C3L-02970 GBM WGS tumor CPT0217880006 425c32f8-8376-440c-9f44-e53deebcf65c_wgs_gdc_realn.bam 83131595971 BAM harmonized CPTAC3 8ff31d83-efad-4f1c-becc-9139d5cd9ad6 83b29e1ef701c18fe38d1816077e432e {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.WXS.N C3L-02970 GBM WXS blood_normal CPT0219880002 CPT0219880002.WholeExome.RP-1303.bam 21081532319 BAM submitted_aligned CPTAC3 8410df92-98cf-44d2-a8ca-8fa3225e6a52 2ee8bd274ff1e3b3aafe380799d15a92 {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02970.WXS.N.hg38 C3L-02970 GBM WXS blood_normal CPT0219880002 61b7727d-fa5b-4787-8df0-c1c0e0662f06_wxs_gdc_realn.bam 28747305469 BAM harmonized CPTAC3 95a7c37d-79ed-4820-8ce3-fbd193e244fa e616b8b78176edecddad989b3ec43a72 {"aliquot_tag": "ALQ_5d2e9a86", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02970.WXS.T C3L-02970 GBM WXS tumor CPT0217880006 CPT0217880006.WholeExome.RP-1303.bam 23397201110 BAM submitted_aligned CPTAC3 57745292-4b18-458c-88ca-e6d042997f29 a7099f3d7b891e5f77155655bddc18ec {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02970.WXS.T.hg38 C3L-02970 GBM WXS tumor CPT0217880006 425c32f8-8376-440c-9f44-e53deebcf65c_wxs_gdc_realn.bam 32422047190 BAM harmonized CPTAC3 a94ae929-cf6b-433f-a12a-ed52b3e5e3d3 740100b865cbc3da5e9331e130add889 {"aliquot_tag": "ALQ_a7c25c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.MethArray.Green.T C3L-02984 GBM Methylation_Array tumor CPT0190240007 203219760074_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 2f4aed33-62d5-4b7e-b347-aa8db5c3606d efe99760153b2250217aace9fe0b82ef {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.MethArray.Red.T C3L-02984 GBM Methylation_Array tumor CPT0190240007 203219760074_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 3d3b16f1-da31-4040-8567-154a3bc67483 f0303792a97f95037f2476b0c2a63d7b {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.miRNA-Seq.S35_L004_R1.T C3L-02984 GBM miRNA-Seq tumor CPT0190240010 181219_UNC31-K00269_0173_BHYGJJBBXX_CCAACA_S35_L004_R1_001.unaln.bam 300691765 BAM S35_L004_R1 submitted_unaligned CPTAC3 1c2fc3de-507c-4eaa-b32f-6264bd1b20db fe2565b54e309a74489678826acbb10f {"aliquot_tag": "ALQ_b1a0662f", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.miRNA-Seq.T.hg38 C3L-02984 GBM miRNA-Seq tumor CPT0190240010 3be475db-a5c2-47d9-ab85-ce875a57dae2_mirnaseq_gdc_realn.bam 345560822 BAM harmonized CPTAC3 15e8ebf9-accb-4845-bd3a-f7ea0827fe3d a2978006bf8c8d3ab017cde74b0935a4 {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.RNA-Seq.chimeric.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.chimeric.gdc_realn.bam 178249678 BAM chimeric harmonized CPTAC3 9fde700d-3863-4ace-9848-c12e99b3c3bb 4b6e82263753ce427c4c660a033a8e21 {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.RNA-Seq.genomic.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.genomic.gdc_realn.bam 6352093350 BAM genomic harmonized CPTAC3 f1205de9-684e-4a6c-b7ba-5c53fe3a90c4 890c6756ae3e775c00d6a8cfa90fc4dc {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.RNA-Seq.S7_L002_R1.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 2810736021 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 76f376b0-2060-4210-91a5-7a9c455f5a06 b941036a99280f8d23b4b30feea436c6 {"aliquot_tag": "ALQ_b1a0662f", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.RNA-Seq.S7_L002_R2.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 2953074405 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 11d1d3d7-9d95-4062-8f5f-87972e664b99 39d560fe0a11144f75ee060c106e3ba0 {"aliquot_tag": "ALQ_b1a0662f", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.RNA-Seq.transcriptome.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.transcriptome.gdc_realn.bam 5552294237 BAM transcriptome harmonized CPTAC3 ca4a895d-80af-4af0-a05c-ddbee224cf63 c33cc70e0efa28a2cc376d27fe767cb5 {"aliquot_tag": "ALQ_b1a0662f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.WGS.N C3L-02984 GBM WGS blood_normal CPT0191140002 CPT0191140002.WholeGenome.RP-1303.bam 54115104663 BAM submitted_aligned CPTAC3 65b9254f-e641-45c7-8f6d-2efc182f471f 07aa0bb822e9f3191a089c24fa14a52c {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02984.WGS.N.hg38 C3L-02984 GBM WGS blood_normal CPT0191140002 e5ddf63e-02bd-4bdc-b9ce-a6a7f6a7f918_wgs_gdc_realn.bam 79654917121 BAM harmonized CPTAC3 5818d333-beab-43be-82c1-0dd0d4b9dc2b 8ffa6279c43d0e1097d53e32ec4d3b57 {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02984.WGS.T C3L-02984 GBM WGS tumor CPT0190240007 CPT0190240007.WholeGenome.RP-1303.bam 54669566821 BAM submitted_aligned CPTAC3 29dfa34a-203b-4e91-ae2a-1a3cdd03a0a1 355448332048a4509dd75d3ea91de4e4 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.WGS.T.hg38 C3L-02984 GBM WGS tumor CPT0190240007 37514624-b499-4178-817a-435023a8082b_wgs_gdc_realn.bam 80406133029 BAM harmonized CPTAC3 298fcf17-cd78-4194-8336-640ea15e3758 f6a430ac758d2726d2b6c6709105ae70 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.WXS.N C3L-02984 GBM WXS blood_normal CPT0191140002 CPT0191140002.WholeExome.RP-1303.bam 23964872836 BAM submitted_aligned CPTAC3 2971dcce-672a-42e0-a04d-b7f9ec9449aa af005fdd8ef3444796e0d07b18479c69 {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02984.WXS.N.hg38 C3L-02984 GBM WXS blood_normal CPT0191140002 e5ddf63e-02bd-4bdc-b9ce-a6a7f6a7f918_wxs_gdc_realn.bam 32945135839 BAM harmonized CPTAC3 d937ec79-2027-4566-89d5-c7bf0b0a1347 8783e4a0c22062a803aa698728588253 {"aliquot_tag": "ALQ_66564f58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-02984.WXS.T C3L-02984 GBM WXS tumor CPT0190240007 CPT0190240007.WholeExome.RP-1303.bam 25077428993 BAM submitted_aligned CPTAC3 9cc19be6-36bb-4cc7-9327-0a93f8ee8369 ea72dd6e3af9500318fa0c9ac328ab59 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02984.WXS.T.hg38 C3L-02984 GBM WXS tumor CPT0190240007 37514624-b499-4178-817a-435023a8082b_wxs_gdc_realn.bam 34063060034 BAM harmonized CPTAC3 26187774-b415-4575-b28a-0c18171805c0 d19249bbcef82f1749fbddc881021eb2 {"aliquot_tag": "ALQ_36dfc2cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02990.MethArray.Green.T C3L-02990 UCEC Methylation_Array tumor CPT0238260006 203273630258_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3db46056-da65-4f8f-8301-d5c6aef23a4d 1ef645ced57f6f2f950c12b7d9b3d9a0 {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.MethArray.Red.T C3L-02990 UCEC Methylation_Array tumor CPT0238260006 203273630258_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 9f7c588f-20b8-446a-b220-4ed347dd1c2f b026d0228b6d00416bb78870e89a12c9 {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.miRNA-Seq.S24_L004_R1.T C3L-02990 UCEC miRNA-Seq tumor CPT0238260009 190508_UNC31-K00269_0215_BH7FYKBBXY_GGTAGC_S24_L004_R1_001.unaln.bam 145691431 BAM S24_L004_R1 submitted_unaligned CPTAC3 86a761ee-1d45-4dcb-8d2c-eb6cb8625299 0c7c57832e2b3e990472bc3cebfd76d8 {"aliquot_tag": "ALQ_3005d2c0", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.miRNA-Seq.T.hg38 C3L-02990 UCEC miRNA-Seq tumor CPT0238260009 e5340ca0-0f97-40b8-ad62-ce5d415b6d00_mirnaseq_gdc_realn.bam 164510208 BAM harmonized CPTAC3 bccd66ec-6551-4386-9acb-9ad00268e663 958db53efe6512bf73560908b7428e80 {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.chimeric.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.chimeric.gdc_realn.bam 34194623 BAM chimeric harmonized CPTAC3 ce5cf0c8-1d3a-432f-b24e-54119e663cd6 cb09a8f2f70dcfe968216b1b8ebba8f9 {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.chimeric.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.chimeric.gdc_realn.bam 408048616 BAM chimeric harmonized CPTAC3 82615f24-bfd6-4dff-a853-0328841aaad8 583dd8c3225541c4c065e34b382b0b26 {"aliquot_tag": "ALQ_8f42da37", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.genomic.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.genomic.gdc_realn.bam 8687125108 BAM genomic harmonized CPTAC3 4920b979-6979-42ee-b4fd-c7db4090defd 954f3408da8b16270c57b148cb98ef34 {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.genomic.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.genomic.gdc_realn.bam 18356064273 BAM genomic harmonized CPTAC3 beb6241f-2d81-4e1d-9197-22b9dee75fc2 a92b8cc18f9a3554dcc73478b62a5a6d {"aliquot_tag": "ALQ_8f42da37", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.S11_R1.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R1_001.fastq.gz 11919349405 FASTQ S11_R1 submitted_unaligned CPTAC3 bce9e6d3-d5d8-4c66-9e6b-c2878e51ac9e c0f19fae6b6616f31afd905df9d52602 {"aliquot_tag": "ALQ_8f42da37", "sample": "S11", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.S11_R2.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R2_001.fastq.gz 12243951613 FASTQ S11_R2 submitted_unaligned CPTAC3 44c9ddbe-7efd-4020-8dd3-ee0c609c99dd 215ed45b1879db0dc792f13ae9c0152e {"aliquot_tag": "ALQ_8f42da37", "sample": "S11", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.S20_L005_R1.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 4088077320 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 33933da7-f679-46b2-9cb5-c536aeb6055b 7ec5ec23e5456dd023e88fc2d7764c9e {"aliquot_tag": "ALQ_3005d2c0", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.S20_L005_R2.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4722129857 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 b52d46e7-1741-4536-8105-b878ad74b379 a23f072722a545e7261170af2f130634 {"aliquot_tag": "ALQ_3005d2c0", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.transcriptome.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.transcriptome.gdc_realn.bam 10362469591 BAM transcriptome harmonized CPTAC3 cc7771d8-4d01-42f6-8d37-f6b1148bfd4f d7df1f1f223d1b8631939e4f6108da3e {"aliquot_tag": "ALQ_3005d2c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.RNA-Seq.transcriptome.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.transcriptome.gdc_realn.bam 9583353435 BAM transcriptome harmonized CPTAC3 49bb70bc-786a-4360-ab54-97b68189d098 4a9082cf554afba5a30517445b478158 {"aliquot_tag": "ALQ_8f42da37", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.WGS.N C3L-02990 UCEC WGS blood_normal CPT0238180002 CPT0238180002.WholeGenome.RP-1303.bam 67506416879 BAM submitted_aligned CPTAC3 fca77088-475d-4166-836d-69cc432da2e3 017dd565fd94c8f31183181aae5556ab {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02990.WGS.N.hg38 C3L-02990 UCEC WGS blood_normal CPT0238180002 1665932e-a10d-4127-b849-6bebfa2f3730_wgs_gdc_realn.bam 97448453229 BAM harmonized CPTAC3 ebfa0769-a427-48d7-82a1-02bcba2c7f14 b17cf3fb25f80e612283c861481923a1 {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02990.WGS.T C3L-02990 UCEC WGS tumor CPT0238260006 CPT0238260006.WholeGenome.RP-1303.bam 78684046559 BAM submitted_aligned CPTAC3 7a5b7822-51a8-4b3b-8132-32fe04142650 2f4b490f28fea88ea1f733f79b6b6bb0 {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.WGS.T.hg38 C3L-02990 UCEC WGS tumor CPT0238260006 718e7147-7ac0-4ffa-b3c7-5f6c041694b6_wgs_gdc_realn.bam 116788648913 BAM harmonized CPTAC3 3a8429ab-4990-46c8-a4f7-f553d7bdb5b8 8854e29545e0c0a1aa18e3212ca603de {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.WXS.N C3L-02990 UCEC WXS blood_normal CPT0238180002 CPT0238180002.WholeExome.RP-1303.bam 24594780744 BAM submitted_aligned CPTAC3 421144c9-7c65-4d2f-868f-353eb252084c c63b3dd9419e8b55a62d756474eb45f6 {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02990.WXS.N.hg38 C3L-02990 UCEC WXS blood_normal CPT0238180002 1665932e-a10d-4127-b849-6bebfa2f3730_wxs_gdc_realn.bam 34443814999 BAM harmonized CPTAC3 cddad781-29c0-44ef-86f7-9b2e571287cd 2710d0bbe72c6d64b3c2353b5fea173a {"aliquot_tag": "ALQ_9e73c787", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-02990.WXS.T C3L-02990 UCEC WXS tumor CPT0238260006 CPT0238260006.WholeExome.RP-1303.bam 28275998877 BAM submitted_aligned CPTAC3 95af935e-e58f-4030-b0f5-35f4413da052 66273511cbb73f162a1b9fd42368de0c {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02990.WXS.T.hg38 C3L-02990 UCEC WXS tumor CPT0238260006 718e7147-7ac0-4ffa-b3c7-5f6c041694b6_wxs_gdc_realn.bam 39237642914 BAM harmonized CPTAC3 cb9deb1a-6f5e-4e89-9697-aeedae23b695 a31a3e2422e74527fa8e07e9e4413e4b {"aliquot_tag": "ALQ_a0bacf51", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03123.MethArray.Green.T C3L-03123 PDA Methylation_Array tumor CPT0166760007 203561620016_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 cc6c0fab-59e5-4edc-a35c-b6ebe6814a7c b6d451d7f32f6871a0683b881a872f89 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.MethArray.Red.T C3L-03123 PDA Methylation_Array tumor CPT0166760007 203561620016_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 6b503521-a959-4382-a1e8-f1b10bf5f771 bee283a9e9dc6ef00930c9bd030715cb {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.miRNA-Seq.A.hg38 C3L-03123 PDA miRNA-Seq tissue_normal CPT0166780007 11925c58-8d29-4a1c-aafe-8a676cb3dcdb_mirnaseq_gdc_realn.bam 265172416 BAM harmonized CPTAC3 e696e253-3a7f-4b0e-aad7-c19f56a0ee3b cefe94bf61f06d4f9bacd3fd6bd655cd {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03123.miRNA-Seq.S141_L007_R1.A C3L-03123 PDA miRNA-Seq tissue_normal CPT0166780007 190828_UNC32-K00270_0200_BH7GVJBBXY_CACTCA_S141_L007_R1_001.unaln.bam 231982570 BAM S141_L007_R1 submitted_unaligned CPTAC3 f7b73545-d227-4312-b560-805bd2232fa0 0b49e7d39e76f0a9e317f15710477a14 {"aliquot_tag": "ALQ_191299e9", "sample": "S141", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03123.miRNA-Seq.S8_L006_R1.T C3L-03123 PDA miRNA-Seq tumor CPT0166760010 190712_UNC32-K00270_0192_BH7HL3BBXY_CACTCA_S8_L006_R1_001.unaln.bam 193236232 BAM S8_L006_R1 submitted_unaligned CPTAC3 dc11bb99-26f8-4117-8584-a46365377b1b f85f22025de3e2d1d3f67f3a922c0457 {"aliquot_tag": "ALQ_215d836a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.miRNA-Seq.T.hg38 C3L-03123 PDA miRNA-Seq tumor CPT0166760010 4410d350-40fb-42b8-ad2f-53d72fd5223c_mirnaseq_gdc_realn.bam 219357750 BAM harmonized CPTAC3 6b590371-378b-43ee-8338-81ec7bd2ffa2 0354315578b9e07584685be6b3d92ed9 {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.RNA-Seq.chimeric.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.chimeric.gdc_realn.bam 25875198 BAM chimeric harmonized CPTAC3 a0a14f6e-20a3-4938-bd57-2a2445c5462c 2d7e3d2660da9a72add179c2c2f96bf9 {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03123.RNA-Seq.chimeric.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.chimeric.gdc_realn.bam 124854557 BAM chimeric harmonized CPTAC3 207e9b7a-a4a8-46a5-91e5-68a018cede53 513f096d25b208bb6741794e626068aa {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.RNA-Seq.genomic.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.genomic.gdc_realn.bam 8255377556 BAM genomic harmonized CPTAC3 a25acbb9-b087-4b7c-bc24-9ecbc2b86ff7 267116a7ad1a855f55e8b15bff27b5d9 {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03123.RNA-Seq.genomic.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.genomic.gdc_realn.bam 8265667683 BAM genomic harmonized CPTAC3 eb041726-4e5c-4174-9fe9-1afeba1af3f2 89f7ffb136d3d5e137e376fa9044e6f4 {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.RNA-Seq.S19_L005_R1.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R1_001.fastq.gz 3169058428 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 e2d0fdac-4a37-4269-acc7-cfc3dacc04e4 40bdd71192ab769b0844766879f01241 {"aliquot_tag": "ALQ_215d836a", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.RNA-Seq.S19_L005_R2.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R2_001.fastq.gz 3488356745 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 3abb4c46-b45d-47f7-96db-3e8dd86eb0b7 5579ae19030372b0758a63c83d9180cd {"aliquot_tag": "ALQ_215d836a", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.RNA-Seq.S26_L007_R1.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R1_001.fastq.gz 3489139847 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 b1bc1b4d-602d-4d25-a55e-d6e84c43e251 f238651b2a86d53d5ee470c968856179 {"aliquot_tag": "ALQ_191299e9", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03123.RNA-Seq.S26_L007_R2.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R2_001.fastq.gz 4077257321 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 c802bd36-e58d-44a7-b8d6-06e40a797dc9 d907b923940c0963d005db1a0b7ef892 {"aliquot_tag": "ALQ_191299e9", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03123.RNA-Seq.transcriptome.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.transcriptome.gdc_realn.bam 9965229210 BAM transcriptome harmonized CPTAC3 29ae09ac-afd3-4e58-8068-438aa475eb96 3910764d667dd53513d0e5f4445c12f5 {"aliquot_tag": "ALQ_191299e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03123.RNA-Seq.transcriptome.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.transcriptome.gdc_realn.bam 7863915235 BAM transcriptome harmonized CPTAC3 699e0fc0-a9db-4675-9c4b-da51757faefd b2d602acd9b82842e6486fa73cb01a7d {"aliquot_tag": "ALQ_215d836a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.Targeted.T C3L-03123 PDA Targeted_Sequencing tumor CPT0166760007 CPT0166760007.CustomSelection.RP-1303.PDO-18786.bam 4538514126 BAM submitted_aligned CPTAC3 dd1c2d44-ecce-4daa-af99-0361d9d16cee 6ef8fa87210db5a9e2f04d7da234c8e2 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.Targeted.T.hg38 C3L-03123 PDA Targeted_Sequencing tumor CPT0166760007 8287500c-9568-40a3-a876-1fe7b53ed102_targetedsequencing_gdc_realn.bam 6294415659 BAM harmonized CPTAC3 0b60b409-6f9a-4e2d-8787-4257c5c28122 14be61b3c0cec381d26990a380073042 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.WGS.N C3L-03123 PDA WGS blood_normal CPT0166790002 CPT0166790002.WholeGenome.RP-1303.bam 70477416565 BAM submitted_aligned CPTAC3 221997f5-aee9-4263-8af0-0752897d5ac0 d6c8bedbf106cfb98a3c836394032fc8 {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03123.WGS.N.hg38 C3L-03123 PDA WGS blood_normal CPT0166790002 750397b5-41fc-4a1b-9653-2b000a24ab2b_wgs_gdc_realn.bam 103357115402 BAM harmonized CPTAC3 00f25890-6095-4014-b61d-8e5c877a1e9e 10dd4b1e027cc1d5e1a7fa3903bbdb77 {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03123.WGS.T C3L-03123 PDA WGS tumor CPT0166760007 CPT0166760007.WholeGenome.RP-1303.bam 83327987355 BAM submitted_aligned CPTAC3 1688ef18-6fe9-4b6b-9401-742eab25dd59 e2feed91361ea0ba164a09df783b165a {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.WGS.T.hg38 C3L-03123 PDA WGS tumor CPT0166760007 8287500c-9568-40a3-a876-1fe7b53ed102_wgs_gdc_realn.bam 121952511929 BAM harmonized CPTAC3 957acabe-9f52-4208-a140-076de5e5c3ce 1e893b028568b4b6de3bd1f97a6a333f {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.WXS.N C3L-03123 PDA WXS blood_normal CPT0166790002 CPT0166790002.WholeExome.RP-1303.bam 35493447153 BAM submitted_aligned CPTAC3 4a3f4ba8-3698-4c8d-b974-7a0e8188d04d 06a75b7d24649b97c46c6162fc7a113f {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03123.WXS.N.hg38 C3L-03123 PDA WXS blood_normal CPT0166790002 750397b5-41fc-4a1b-9653-2b000a24ab2b_wxs_gdc_realn.bam 49329488852 BAM harmonized CPTAC3 ff7e34c1-1ec1-43bb-9dec-d6b2332117ca 3012b26ecbbf72f6f50bf4a3f799eea5 {"aliquot_tag": "ALQ_541844d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03123.WXS.T C3L-03123 PDA WXS tumor CPT0166760007 CPT0166760007.WholeExome.RP-1303.bam 47024032591 BAM submitted_aligned CPTAC3 fe9f2e2a-5441-4425-a489-1ca18975f66d 23d4a39fdb46fa360db7905d0dc22704 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03123.WXS.T.hg38 C3L-03123 PDA WXS tumor CPT0166760007 8287500c-9568-40a3-a876-1fe7b53ed102_wxs_gdc_realn.bam 65276176884 BAM harmonized CPTAC3 d2c97e4e-aaa6-41e1-872b-2e034ea26299 1b962288dd59120f157b8c889d1ecb79 {"aliquot_tag": "ALQ_a6222788", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03126.MethArray.Green.T C3L-03126 PDA Methylation_Array tumor CPT0166850009 203561450103_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 166572b6-60d4-4b88-a68d-83b9f1381301 0308e8650476be1ba16cceb6b27705ee {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.MethArray.Red.T C3L-03126 PDA Methylation_Array tumor CPT0166850009 203561450103_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 d55f612f-37ea-43c6-8879-1b01321c0c72 daa3387bc309f2a6c53c0f7b41b56270 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.miRNA-Seq.S38_L005_R1.T C3L-03126 PDA miRNA-Seq tumor CPT0166850012 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGTCA_S38_L005_R1_001.unaln.bam 185470771 BAM S38_L005_R1 submitted_unaligned CPTAC3 61dfad13-1ec5-433e-8599-9023ad1c02b4 58c6f45eb9c93b420fed40e20fe9019e {"aliquot_tag": "ALQ_79a52a43", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.miRNA-Seq.T.hg38 C3L-03126 PDA miRNA-Seq tumor CPT0166850012 1b9d03e5-035b-4d95-ac1d-5407d17fe37e_mirnaseq_gdc_realn.bam 212713772 BAM harmonized CPTAC3 b189cdf0-8c2c-4b24-b939-40c47334d23a f9c0b449d6fdf39d482fc3ccc1a19657 {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.RNA-Seq.chimeric.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.chimeric.gdc_realn.bam 30600539 BAM chimeric harmonized CPTAC3 50e5c2f0-73e4-4c98-8b6b-ee858ede0531 f6a022a085c52237a4dcbe62db27054a {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.RNA-Seq.genomic.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.genomic.gdc_realn.bam 7776695946 BAM genomic harmonized CPTAC3 6e77cf3d-a756-4c61-8449-b8af173324f0 bcfdb290a97ee5b10f46b36d35ee2ea9 {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.RNA-Seq.S24_L006_R1.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 3643177624 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 853bc57c-a14b-4bdd-afa6-7f050d1a37d5 385e59afd084210c33dd2fa146f7c198 {"aliquot_tag": "ALQ_79a52a43", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.RNA-Seq.S24_L006_R2.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 3944882637 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 0edf61ba-566a-4377-899e-8721ecfc3c42 d14c036cbec363bf3044e80495f8c119 {"aliquot_tag": "ALQ_79a52a43", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.RNA-Seq.transcriptome.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.transcriptome.gdc_realn.bam 9873713859 BAM transcriptome harmonized CPTAC3 9d5f3fb8-0ab2-45cf-a942-111034a43933 0f0dca5659926e03ebdc121b35e6a098 {"aliquot_tag": "ALQ_79a52a43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.Targeted.T C3L-03126 PDA Targeted_Sequencing tumor CPT0166850009 CPT0166850009.CustomSelection.RP-1303.PDO-18786.bam 5156861633 BAM submitted_aligned CPTAC3 bc0ffcae-edce-4b12-8227-690a07f57d30 b53234af0dcf54df0d6ac845bba6b112 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.Targeted.T.hg38 C3L-03126 PDA Targeted_Sequencing tumor CPT0166850009 b4005656-4f22-47b8-a018-3105dd53b6b8_targetedsequencing_gdc_realn.bam 7230807204 BAM harmonized CPTAC3 44090b63-9a48-4986-9107-be005c734e58 4a9be116a970b0aa0046b39fd8273631 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.WGS.N C3L-03126 PDA WGS blood_normal CPT0166880002 CPT0166880002.WholeGenome.RP-1303.bam 61261340000 BAM submitted_aligned CPTAC3 6997f4a5-b856-45e9-b307-59452a042310 ca8bd36929c8b24becbb8d06af997f56 {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03126.WGS.N.hg38 C3L-03126 PDA WGS blood_normal CPT0166880002 093ac883-3321-40cd-a651-92d31d03cf68_wgs_gdc_realn.bam 89367390036 BAM harmonized CPTAC3 fe2c33a5-4d60-457b-9ab0-601ccc177539 fee80c99cc98fc9a1272d8c64a89f225 {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03126.WGS.T C3L-03126 PDA WGS tumor CPT0166850009 CPT0166850009.WholeGenome.RP-1303.bam 89192975886 BAM submitted_aligned CPTAC3 22cb41f6-095b-4ad1-b0e0-6c3fd0c8c3dc d72b81ed3100e104bb5f501966bae38b {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.WGS.T.hg38 C3L-03126 PDA WGS tumor CPT0166850009 b4005656-4f22-47b8-a018-3105dd53b6b8_wgs_gdc_realn.bam 129345488276 BAM harmonized CPTAC3 d4d51fde-0832-487e-951e-ac93d36886ce 8bb816dfc06b10a94846f64c81a8512c {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.WXS.N C3L-03126 PDA WXS blood_normal CPT0166880002 CPT0166880002.WholeExome.RP-1303.bam 26145422087 BAM submitted_aligned CPTAC3 132aeed7-edd5-4bd9-a758-acb00295e04e 49e43aec41fe4f4e46f6531f6b9d4210 {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03126.WXS.N.hg38 C3L-03126 PDA WXS blood_normal CPT0166880002 093ac883-3321-40cd-a651-92d31d03cf68_wxs_gdc_realn.bam 35547933028 BAM harmonized CPTAC3 9859fbcf-15e7-41ba-b5c6-a598b426cc2b 31e35d121acbdcb60a284ee86976b66c {"aliquot_tag": "ALQ_982edfb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03126.WXS.T C3L-03126 PDA WXS tumor CPT0166850009 CPT0166850009.WholeExome.RP-1303.bam 48555629579 BAM submitted_aligned CPTAC3 f6457aa6-4845-4e18-ba79-ad29bcf40596 387da32de8634ba9f6b26adf2cf25efc {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03126.WXS.T.hg38 C3L-03126 PDA WXS tumor CPT0166850009 b4005656-4f22-47b8-a018-3105dd53b6b8_wxs_gdc_realn.bam 67376048104 BAM harmonized CPTAC3 3e9c1168-2601-4803-819f-f4c6769d10ca d2012d319ada38dffa19c32183d9d643 {"aliquot_tag": "ALQ_f76cc28a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.MethArray.Green.T C3L-03129 PDA Methylation_Array tumor CPT0166930007 203561620153_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 544307df-a85a-4a5d-9b5a-11bed40bbe98 7640207c5266c1179eaa8ca8f68aa381 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.MethArray.Red.T C3L-03129 PDA Methylation_Array tumor CPT0166930007 203561620153_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 83d7f940-8978-4631-aa7a-12dd269f881a ffb4ffe32c7fa48b632341d8fe95db98 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.miRNA-Seq.S34_L002_R1.T C3L-03129 PDA miRNA-Seq tumor CPT0166930014 190813_UNC32-K00270_0196_AH5MCWBBXY_ACAGTG_S34_L002_R1_001.unaln.bam 144049335 BAM S34_L002_R1 submitted_unaligned CPTAC3 f194f8e7-2b19-40c6-8fb6-1e9c966c40c8 71718342479d29cfe2d0e12847ce73a3 {"aliquot_tag": "ALQ_d4daa973", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.miRNA-Seq.T.hg38 C3L-03129 PDA miRNA-Seq tumor CPT0166930014 c933447f-3db9-4885-b12e-ec01655e92a2_mirnaseq_gdc_realn.bam 165270623 BAM harmonized CPTAC3 3f4290c3-2354-452b-8bd6-f9e958e550b2 beb8dcc0db5a196104db6ffb75cd7574 {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.RNA-Seq.chimeric.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.chimeric.gdc_realn.bam 28660223 BAM chimeric harmonized CPTAC3 fa7c1177-841c-44bf-b79f-d1ede5440471 3201206fd03fd67c332e38d388520b80 {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.RNA-Seq.genomic.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.genomic.gdc_realn.bam 6848194805 BAM genomic harmonized CPTAC3 ea20ad06-c03b-40ae-a043-a584ab40e9c3 889ecdb7349d9b37dda77b8aea0a869e {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.RNA-Seq.S7_L002_R1.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R1_001.fastq.gz 3313365104 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 e269d17b-c9c3-4ec8-a0ed-bc07de320b79 59668587254a6fa4446896e7eebbb0d3 {"aliquot_tag": "ALQ_d4daa973", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.RNA-Seq.S7_L002_R2.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R2_001.fastq.gz 3472229120 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 3974e643-473b-42a9-976a-d650465305df 2045648006bb748ecd20b16c76730cd0 {"aliquot_tag": "ALQ_d4daa973", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.RNA-Seq.transcriptome.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.transcriptome.gdc_realn.bam 8113184129 BAM transcriptome harmonized CPTAC3 5539b0e0-b0a6-443d-86f3-fd87114dc9d2 43c9fd3d9864893184050fcde473f77f {"aliquot_tag": "ALQ_d4daa973", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.Targeted.T C3L-03129 PDA Targeted_Sequencing tumor CPT0166930007 CPT0166930007.CustomSelection.RP-1303.PDO-18786.bam 4390428737 BAM submitted_aligned CPTAC3 71502fca-4531-485a-a51a-ac1a53b909ec 8afe62e1cf1dca150842e87f26e22493 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.Targeted.T.hg38 C3L-03129 PDA Targeted_Sequencing tumor CPT0166930007 ddab10d4-fa91-47e8-a804-ad0e91d59908_targetedsequencing_gdc_realn.bam 6110893803 BAM harmonized CPTAC3 38e1cdff-124a-4a57-828a-520c150427ba 0919428794bd5f68d14c731a8d278b09 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.WGS.N C3L-03129 PDA WGS blood_normal CPT0166970002 CPT0166970002.WholeGenome.RP-1303.bam 83924508486 BAM submitted_aligned CPTAC3 3d2a655a-6fb5-4484-9823-ff67e5f68244 ec40980d65ced26a92fe2e59b0f1d8f6 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03129.WGS.N.hg38 C3L-03129 PDA WGS blood_normal CPT0166970002 02442908-361f-410e-8476-5e68d61ed91f_wgs_gdc_realn.bam 124661363023 BAM harmonized CPTAC3 b4e74d46-42cc-482a-bda1-14dc3fb5dfb6 3f743cb2e6698fbf35f35355f0091136 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03129.WGS.T C3L-03129 PDA WGS tumor CPT0166930007 CPT0166930007.WholeGenome.RP-1303.bam 75095660573 BAM submitted_aligned CPTAC3 e2bff63d-2796-4715-af95-a3796d944faa f94dc7ef21073308e2e6bb3b1c3d4ff5 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.WGS.T.hg38 C3L-03129 PDA WGS tumor CPT0166930007 ddab10d4-fa91-47e8-a804-ad0e91d59908_wgs_gdc_realn.bam 111138801199 BAM harmonized CPTAC3 0e80a686-379c-4315-9a09-accd7c17a813 5a35004f292b105bdcf578a47ceeef5f {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.WXS.N C3L-03129 PDA WXS blood_normal CPT0166970002 CPT0166970002.WholeExome.RP-1303.bam 28282641123 BAM submitted_aligned CPTAC3 70cface7-dd0d-4ae0-80f3-4cecffd4696b 43091c51f13e4d684dce43ddc26b3674 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03129.WXS.N.hg38 C3L-03129 PDA WXS blood_normal CPT0166970002 02442908-361f-410e-8476-5e68d61ed91f_wxs_gdc_realn.bam 38708200112 BAM harmonized CPTAC3 21d9eb71-8b2e-46fb-8f3b-83f895ec7c3d 7244a5967cc0903e04e098505682e482 {"aliquot_tag": "ALQ_d1229bc7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03129.WXS.T C3L-03129 PDA WXS tumor CPT0166930007 CPT0166930007.WholeExome.RP-1303.bam 18177495602 BAM submitted_aligned CPTAC3 282bc2f9-9ad8-42da-9193-795ab48a4ed6 d13d938e5a60e225703876fffde4aa7d {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03129.WXS.T.hg38 C3L-03129 PDA WXS tumor CPT0166930007 ddab10d4-fa91-47e8-a804-ad0e91d59908_wxs_gdc_realn.bam 25060652567 BAM harmonized CPTAC3 28307d52-ca90-468b-8972-15874891cc33 c1a8b18547142ea896e2a7a68c5925a4 {"aliquot_tag": "ALQ_54c8c988", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.MethArray.Green.T C3L-03143 UCEC Methylation_Array tumor CPT0234080006 203273630261_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e47e19c7-3371-4894-81a9-1ab31a66e3eb e05900eba592854b8853b9fd5e900f97 {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.MethArray.Red.T C3L-03143 UCEC Methylation_Array tumor CPT0234080006 203273630261_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 7c03fb04-3bc5-4a13-b83d-34783acfeb90 1faec2280d88c55e1e781c60ff4dd5f6 {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.miRNA-Seq.S30_L004_R1.T C3L-03143 UCEC miRNA-Seq tumor CPT0234080009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACCGG_S30_L004_R1_001.unaln.bam 164396800 BAM S30_L004_R1 submitted_unaligned CPTAC3 2c0733e4-8321-4784-8355-1dba5aa89050 e92da04033f7f41af8d8e20baf4cbb41 {"aliquot_tag": "ALQ_55da7de", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.miRNA-Seq.T.hg38 C3L-03143 UCEC miRNA-Seq tumor CPT0234080009 1a313a7d-5e35-48eb-b68f-fe367c6c40fd_mirnaseq_gdc_realn.bam 184011093 BAM harmonized CPTAC3 ee12168f-0c9d-40b8-8194-b00f27b6e873 d78aec7d02e5089c485edc7e8fb4081a {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.chimeric.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.chimeric.gdc_realn.bam 39638221 BAM chimeric harmonized CPTAC3 256d68c1-c7bb-43f5-8e9a-fc672a414eee cf8d8b8210c1fc1f5231c867f2c3bc88 {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.chimeric.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.chimeric.gdc_realn.bam 148466280 BAM chimeric harmonized CPTAC3 473a5226-a452-4105-93dc-4b863d40ac15 1aea07cef6c93e610faf468b9fc6d3d0 {"aliquot_tag": "ALQ_f0aab788", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.genomic.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.genomic.gdc_realn.bam 8767597176 BAM genomic harmonized CPTAC3 4fb4918e-08b9-4652-b0f0-1a06b6079821 c880e9d115324cf8db6e842b0e2fbc36 {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.genomic.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.genomic.gdc_realn.bam 7442978173 BAM genomic harmonized CPTAC3 aa5aba6c-35c9-46e5-8987-d4e2881a958b fbe6284fda3c6402eccff27acced99d1 {"aliquot_tag": "ALQ_f0aab788", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.S11_L003_R1.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R1_001.fastq.gz 4275917681 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 d10dd270-0122-4c05-afc7-916100671076 e8e08f96b6d1665b338312bcc33c509f {"aliquot_tag": "ALQ_55da7de", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.S11_L003_R2.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R2_001.fastq.gz 4839861052 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 69b4c68c-ca86-49d0-982e-d25b6557cca2 2536ef6535af6c23535b456f49fc43cc {"aliquot_tag": "ALQ_55da7de", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.S79_R1.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R1_001.fastq.gz 4003866395 FASTQ S79_R1 submitted_unaligned CPTAC3 3025687a-81fe-41b0-a2b8-9368a9dc7624 590f68c1b4293a6f23ba21c51dd31395 {"aliquot_tag": "ALQ_f0aab788", "sample": "S79", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.S79_R2.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R2_001.fastq.gz 4107879253 FASTQ S79_R2 submitted_unaligned CPTAC3 ed77dd3c-d562-40bc-8328-4bff4e336130 2f5ae37e76d7990472f8473c759580e5 {"aliquot_tag": "ALQ_f0aab788", "sample": "S79", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.transcriptome.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.transcriptome.gdc_realn.bam 14554117741 BAM transcriptome harmonized CPTAC3 a92885dc-60a9-4531-927b-2fa890d66e42 ce89cee460c44505ad37f7ec112486b9 {"aliquot_tag": "ALQ_55da7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.RNA-Seq.transcriptome.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.transcriptome.gdc_realn.bam 4288093961 BAM transcriptome harmonized CPTAC3 262098e9-15c9-4633-8a9c-62e1a36b26ec 8757a49956c31f01af62851c2a6b875f {"aliquot_tag": "ALQ_f0aab788", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.WGS.N C3L-03143 UCEC WGS blood_normal CPT0234140002 CPT0234140002.WholeGenome.RP-1303.bam 81777282121 BAM submitted_aligned CPTAC3 5e8c92ab-8707-41e9-b476-cf8af8395e46 ccfd16dccbac5d8d073598699bf55dac {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03143.WGS.N.hg38 C3L-03143 UCEC WGS blood_normal CPT0234140002 5dc96511-fc19-4b55-b9e0-55b3ef2fb176_wgs_gdc_realn.bam 121296420267 BAM harmonized CPTAC3 848d8f16-6168-4777-bb4d-7d9a895ff808 d2fb0bd593351f5ba61b184a7e7716c9 {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03143.WGS.T C3L-03143 UCEC WGS tumor CPT0234080006 CPT0234080006.WholeGenome.RP-1303.bam 71529515128 BAM submitted_aligned CPTAC3 b936861b-adf3-40dd-983f-8d49b446f341 572ec1f14b74a7f507ce6fc512ccdf0d {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.WGS.T.hg38 C3L-03143 UCEC WGS tumor CPT0234080006 42b2cd2c-215d-443f-9b76-1d80d9b629c5_wgs_gdc_realn.bam 106842266944 BAM harmonized CPTAC3 0666d510-739f-4359-b029-5de8f4a29805 6772c20a3cf9ae4d2bd9a945d00ee94f {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.WXS.N C3L-03143 UCEC WXS blood_normal CPT0234140002 CPT0234140002.WholeExome.RP-1303.bam 26834864504 BAM submitted_aligned CPTAC3 bfb8757c-0214-4893-a440-a685765c187c f7e88a82090eadeaf6151d4fdc3a5c93 {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03143.WXS.N.hg38 C3L-03143 UCEC WXS blood_normal CPT0234140002 5dc96511-fc19-4b55-b9e0-55b3ef2fb176_wxs_gdc_realn.bam 36000643406 BAM harmonized CPTAC3 ef0d1ae5-56fc-4fbf-be91-b4a212d983a4 cae3000af0920be503554a46504ec3d2 {"aliquot_tag": "ALQ_9c2340f2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03143.WXS.T C3L-03143 UCEC WXS tumor CPT0234080006 CPT0234080006.WholeExome.RP-1303.bam 20633881454 BAM submitted_aligned CPTAC3 4237ffbc-eeca-4d35-80c6-efbbe4235ef4 e573ea4bf5d18b030c1764ee39d9b43b {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03143.WXS.T.hg38 C3L-03143 UCEC WXS tumor CPT0234080006 42b2cd2c-215d-443f-9b76-1d80d9b629c5_wxs_gdc_realn.bam 30018381079 BAM harmonized CPTAC3 e2328dfa-307b-4890-bc96-e41be7a811d1 1e7286d63cf2a5e0be570558c730708b {"aliquot_tag": "ALQ_95e2ba4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03152.miRNA-Seq.S41_L002_R1.T C3L-03152 UCEC miRNA-Seq tumor CPT0234630038 190508_UNC31-K00269_0215_BH7FYKBBXY_GACGAC_S41_L002_R1_001.unaln.bam 247865069 BAM S41_L002_R1 submitted_unaligned CPTAC3 23d00383-8d77-42ad-8c83-8e97097939d0 f81d24c658c3d4ca972c13aad5b79d2a {"aliquot_tag": "ALQ_f8fe1687", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03152.miRNA-Seq.T.hg38 C3L-03152 UCEC miRNA-Seq tumor CPT0234630038 92793c57-8634-48e6-a13b-d44c5f9aef67_mirnaseq_gdc_realn.bam 278960157 BAM harmonized CPTAC3 697eecd4-1661-4f3e-8ccc-f3cff74a9414 6c357f1e16688ee81bba827c1992af28 {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03152.RNA-Seq.chimeric.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.chimeric.gdc_realn.bam 36880693 BAM chimeric harmonized CPTAC3 2f8ab2fa-836b-46ff-87ab-7a5d93caaf5a 91ec070dc163f07a583373d61fb9ca2b {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03152.RNA-Seq.genomic.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.genomic.gdc_realn.bam 8584149651 BAM genomic harmonized CPTAC3 cb90f173-90c6-47c6-a8aa-5f7b51de0e0d 152d7438dac51d3bdea7fc12e04fe01e {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03152.RNA-Seq.S25_L007_R1.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R1_001.fastq.gz 4282306686 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 18238827-1f93-497a-9cca-f382012102e0 5b4339c02d9162a2a68055a2cb1e8654 {"aliquot_tag": "ALQ_f8fe1687", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03152.RNA-Seq.S25_L007_R2.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R2_001.fastq.gz 4765816388 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 04db34c0-2681-41e0-a7e9-70d87522b5f2 b034aa5349666089aafaef0eae3fbf61 {"aliquot_tag": "ALQ_f8fe1687", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03152.RNA-Seq.transcriptome.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.transcriptome.gdc_realn.bam 12188557829 BAM transcriptome harmonized CPTAC3 b371d4b1-78a1-44c3-a94b-0677293a9ea4 8e79ab3047ba581be041fc3e48c45172 {"aliquot_tag": "ALQ_f8fe1687", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03260.MethArray.Green.T C3L-03260 GBM Methylation_Array tumor CPT0189250006 203219650177_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 5a0942e8-d03a-4a4b-ad6e-a0453faf6699 9fcbde7dd6d7210c2b507123fae0f238 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.MethArray.Red.T C3L-03260 GBM Methylation_Array tumor CPT0189250006 203219650177_R05C01_Red.idat 13676222 IDAT Red NA CPTAC3 ef4699cd-0217-4301-a830-d5c7727d440c 03c488ea267dd7bdd4f20d0ad3d6935e {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.miRNA-Seq.S7_L003_R1.T C3L-03260 GBM miRNA-Seq tumor CPT0189250009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGATC_S7_L003_R1_001.unaln.bam 395616015 BAM S7_L003_R1 submitted_unaligned CPTAC3 b54c19ab-bc31-438a-9f66-9284562c1769 7e72921776f2f44a975273f76d59374c {"aliquot_tag": "ALQ_b5358337", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.miRNA-Seq.T.hg38 C3L-03260 GBM miRNA-Seq tumor CPT0189250009 d55af09e-b76d-4dfb-be95-b77afa6083c5_mirnaseq_gdc_realn.bam 440597061 BAM harmonized CPTAC3 9445d563-f2f6-48ce-bc56-63b3a74bf63d 9b2e857615694b9b513fa5a616434d95 {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.RNA-Seq.chimeric.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.chimeric.gdc_realn.bam 173147188 BAM chimeric harmonized CPTAC3 fd684963-2daf-42c9-be62-f01de81d73e8 422e14cf5d9765d1949f00ab8d9c39e7 {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.RNA-Seq.genomic.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.genomic.gdc_realn.bam 8296113252 BAM genomic harmonized CPTAC3 d5dcfad0-ff00-4e04-88fb-db1befc8fef4 f65855fdb9c52e1f94cbb48b073a8e2d {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.RNA-Seq.S5_L002_R1.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R1_001.fastq.gz 3783047594 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 5abdb618-d893-4beb-b3cd-274c0b41fe38 ca9d4f7ebb49b2b1d07b70a03b119b35 {"aliquot_tag": "ALQ_b5358337", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.RNA-Seq.S5_L002_R2.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R2_001.fastq.gz 4064400209 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 f2ed3a7a-ad2e-4277-87a1-35487339dcaa 5ad47b3d3c92cf61014d5dbafbc7fa82 {"aliquot_tag": "ALQ_b5358337", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.RNA-Seq.transcriptome.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.transcriptome.gdc_realn.bam 9663164401 BAM transcriptome harmonized CPTAC3 30a06215-164f-4e8b-b874-6292ec21b9d3 6542e27bcfd2607f60ef33cee34599e6 {"aliquot_tag": "ALQ_b5358337", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.WGS.N C3L-03260 GBM WGS blood_normal CPT0190200002 CPT0190200002.WholeGenome.RP-1303.bam 58748641881 BAM submitted_aligned CPTAC3 6cbb8c3a-9a3b-4859-abab-b66a92d587d7 48c46b8e22303016eb995cec0c2fec51 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03260.WGS.N.hg38 C3L-03260 GBM WGS blood_normal CPT0190200002 6a194913-6f77-46e2-8eb6-19fe1ff78405_wgs_gdc_realn.bam 84625597942 BAM harmonized CPTAC3 e38e44be-6fcf-4507-9438-e015dcd8aed1 659092ddb65df36eb0884cb012826503 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03260.WGS.T C3L-03260 GBM WGS tumor CPT0189250006 CPT0189250006.WholeGenome.RP-1303.bam 70357795761 BAM submitted_aligned CPTAC3 61f46131-6963-4c81-8a89-dd9952629e53 28dd093a939a560a4d8d9076a7aa884d {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.WGS.T.hg38 C3L-03260 GBM WGS tumor CPT0189250006 a3156b22-4743-4eb4-9d13-0d5be60ef996_wgs_gdc_realn.bam 104119641036 BAM harmonized CPTAC3 63a9920c-6299-4fd3-adc6-82d67426d4ff b2fe741b80ff4ee9fa3aaf1718ebf984 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.WXS.N C3L-03260 GBM WXS blood_normal CPT0190200002 CPT0190200002.WholeExome.RP-1303.bam 28833002601 BAM submitted_aligned CPTAC3 37bbad93-8750-4669-93b2-1336ec00d890 a6f6910f7c62468b42fd76a3393b8060 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03260.WXS.N.hg38 C3L-03260 GBM WXS blood_normal CPT0190200002 6a194913-6f77-46e2-8eb6-19fe1ff78405_wxs_gdc_realn.bam 39337293664 BAM harmonized CPTAC3 f43b671d-b7d0-4afb-9492-3f25b9d5995c 20ebd5565774edb49c9d1c617cbe6fa8 {"aliquot_tag": "ALQ_b3359082", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03260.WXS.T C3L-03260 GBM WXS tumor CPT0189250006 CPT0189250006.WholeExome.RP-1303.bam 30927408831 BAM submitted_aligned CPTAC3 eb0180f7-3827-4044-b73a-7572616e1dac 0d0a196cc9b84e2c44f5f228222bd3b0 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03260.WXS.T.hg38 C3L-03260 GBM WXS tumor CPT0189250006 a3156b22-4743-4eb4-9d13-0d5be60ef996_wxs_gdc_realn.bam 42928914301 BAM harmonized CPTAC3 6e2e9aa3-fb05-4645-b146-22f8a77a147f a6aae5ad4d98fca640cb11e35990d036 {"aliquot_tag": "ALQ_258a9ea6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.ADD_1b56ebc3.MethArray.Green.A C3L-03262 LUAD Methylation_Array tissue_normal CPT0189310006 203561450008_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6ff79bd1-90eb-40ce-92de-79e4ac69a826 8806b516410dc2af8dea752ab23744fe {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.ADD_1b56ebc3.MethArray.Red.A C3L-03262 LUAD Methylation_Array tissue_normal CPT0189310006 203561450008_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 5ce5b57a-0bef-4f1c-9e02-12992363cf2d 33325a00fa2138d873118a47c2215499 {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.ADD_1b56ebc3.WXS.A C3L-03262 LUAD WXS tissue_normal CPT0189310006 CPT0189310006.WholeExome.RP-1303.bam 37479624642 BAM submitted_aligned CPTAC3 2e7c9d48-09d1-4944-96a5-543c7002f847 600f59b63b0b8a75fc483847ec5344a0 {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.ADD_1b56ebc3.WXS.A.hg38 C3L-03262 LUAD WXS tissue_normal CPT0189310006 8419506b-f9d2-4fb0-bce5-271950429dc6_wxs_gdc_realn.bam 51308609883 BAM harmonized CPTAC3 382cac2a-d4c5-488d-8bda-c5eb0caba64b 0d641e07746bdc9de0238413b60262d7 {"aliquot_tag": "ADD_1b56ebc3", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.MethArray.Green.T C3L-03262 LUAD Methylation_Array tumor CPT0189280007 203219650169_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4438bcdd-3702-45f5-9e1d-1b7f453143f3 43b990b5c8ce03dd13070a59e4d37b95 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.MethArray.Red.T C3L-03262 LUAD Methylation_Array tumor CPT0189280007 203219650169_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 2fcf4c87-5745-4f15-8400-acc7eaee354e f7fe307e9e4bcb84c0a1a5c24e898de7 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.miRNA-Seq.A.hg38 C3L-03262 LUAD miRNA-Seq tissue_normal CPT0189310009 b5930a04-f24c-459e-b695-d1d8ef8b7dc7_mirnaseq_gdc_realn.bam 309077234 BAM harmonized CPTAC3 65242e56-c359-4191-b4e5-b30a0be47213 9ad11388304c38d37ee2d2aea811c57a {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.miRNA-Seq.S48_L007_R1.T C3L-03262 LUAD miRNA-Seq tumor CPT0189280010 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGGCA_S48_L007_R1_001.unaln.bam 200220207 BAM S48_L007_R1 submitted_unaligned CPTAC3 17176827-3f35-4941-840e-918657a45ad4 73492db7b07e489f2781b796bdeaf72a {"aliquot_tag": "ALQ_2d62ce63", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.miRNA-Seq.S9_L006_R1.A C3L-03262 LUAD miRNA-Seq tissue_normal CPT0189310009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTTGA_S9_L006_R1_001.unaln.bam 272725713 BAM S9_L006_R1 submitted_unaligned CPTAC3 d10f7516-5a18-434b-8ddd-dd41f973b7e0 6e475905dfe6bab4e3095aedd6a21cb4 {"aliquot_tag": "ALQ_8be9f652", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.miRNA-Seq.T.hg38 C3L-03262 LUAD miRNA-Seq tumor CPT0189280010 d4b39619-5bbe-4fac-9d78-454dfd82821a_mirnaseq_gdc_realn.bam 219721355 BAM harmonized CPTAC3 7364073f-8b8a-4953-a1c4-0887c50bc844 f80b7bc56f9d468a17bb15ed195290cd {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.RNA-Seq.chimeric.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.chimeric.gdc_realn.bam 52204692 BAM chimeric harmonized CPTAC3 2457cb8a-e1ef-4944-876c-c443f11c6a17 fb72167841a292bc2843465fb440de82 {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.RNA-Seq.chimeric.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.chimeric.gdc_realn.bam 42765717 BAM chimeric harmonized CPTAC3 5cbb64d5-f587-4523-a0d5-f93c5174e1d1 402001631761bdbd6918cff6083a9ae7 {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.RNA-Seq.genomic.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.genomic.gdc_realn.bam 8476276543 BAM genomic harmonized CPTAC3 b222ca89-0f2c-4461-bdf4-f3c81bca1bc6 186e6aee27528c649eac2e5510e6eb51 {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.RNA-Seq.genomic.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.genomic.gdc_realn.bam 6702338505 BAM genomic harmonized CPTAC3 c593702c-11f0-4efa-b947-b6aeab17c75a 3256443ed51e31860c61854a7fba7d63 {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.RNA-Seq.S12_L003_R1.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3840371385 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 5a08b93b-d972-417f-9eb4-1bb0938b540a cfa4ad144e2d7919f8a3b5344bee7b3d {"aliquot_tag": "ALQ_8be9f652", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.RNA-Seq.S12_L003_R2.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4273435058 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 db3a60ba-b8b9-4c8b-a49e-234c1640f018 3c95e0862a35818ef099c045cd81d267 {"aliquot_tag": "ALQ_8be9f652", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.RNA-Seq.S19_L005_R1.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R1_001.fastq.gz 3070816096 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 3c370f76-baed-452e-af24-0b557400ea8b 78390bf3f6563075a27341c339b13310 {"aliquot_tag": "ALQ_2d62ce63", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.RNA-Seq.S19_L005_R2.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R2_001.fastq.gz 3346174502 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 b6dd0e9a-b7ec-418a-8e49-c40d480009dd 75a8d181e244deb0463f298fe152117c {"aliquot_tag": "ALQ_2d62ce63", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.RNA-Seq.transcriptome.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.transcriptome.gdc_realn.bam 9013882720 BAM transcriptome harmonized CPTAC3 11c6f0d1-5cad-4979-ac06-29daef1a6cfa 2855bf6bacd224d1663408c13983111b {"aliquot_tag": "ALQ_8be9f652", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03262.RNA-Seq.transcriptome.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.transcriptome.gdc_realn.bam 6788514751 BAM transcriptome harmonized CPTAC3 4746b60c-0730-4c29-9f9f-358f4fd2c551 82a276a095740f909ea30f87504e113f {"aliquot_tag": "ALQ_2d62ce63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.WGS.N C3L-03262 LUAD WGS blood_normal CPT0190210002 CPT0190210002.WholeGenome.RP-1303.bam 56001124873 BAM submitted_aligned CPTAC3 bdbc349f-c96e-4c0f-b6f9-a56a37a748bb 7f1e7642539e24ee9bcdffd6b9000a3f {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03262.WGS.N.hg38 C3L-03262 LUAD WGS blood_normal CPT0190210002 a93a956b-f67c-46da-8c83-18e69db799ed_wgs_gdc_realn.bam 82723706130 BAM harmonized CPTAC3 9359c8e3-33ed-4620-9b71-5c479dd2a9f4 db2f0250a524f7391540d8a50bc928f1 {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03262.WGS.T C3L-03262 LUAD WGS tumor CPT0189280007 CPT0189280007.WholeGenome.RP-1303.bam 54395352915 BAM submitted_aligned CPTAC3 efea4fca-95c3-416a-bce8-f43c22c3bc49 e6f21585b81bc57e582dd32836223dfe {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.WGS.T.hg38 C3L-03262 LUAD WGS tumor CPT0189280007 a40a3846-3a11-4474-8deb-2a4629226afb_wgs_gdc_realn.bam 81199088175 BAM harmonized CPTAC3 71555590-e695-4782-9f1d-1fea8b8a11f0 e6f72e0a62a8bd5413217a1c62601afd {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.WXS.N C3L-03262 LUAD WXS blood_normal CPT0190210002 CPT0190210002.WholeExome.RP-1303.bam 21861734499 BAM submitted_aligned CPTAC3 81e8863a-716f-4fce-bbac-14c629de6e6b b92f49ab404a22c24b41115c3cc36bd5 {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03262.WXS.N.hg38 C3L-03262 LUAD WXS blood_normal CPT0190210002 a93a956b-f67c-46da-8c83-18e69db799ed_wxs_gdc_realn.bam 30007536859 BAM harmonized CPTAC3 376a3956-658f-44ec-ba00-fc88fed38ee1 db20f29690ae856747b16f71d303cab0 {"aliquot_tag": "ALQ_8e55b932", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03262.WXS.T C3L-03262 LUAD WXS tumor CPT0189280007 CPT0189280007.WholeExome.RP-1303.bam 23493868991 BAM submitted_aligned CPTAC3 70ceb6ad-8420-451e-ac87-5d1925ee7c8e 506d595913efebff0b7e666c1e9e5d25 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03262.WXS.T.hg38 C3L-03262 LUAD WXS tumor CPT0189280007 a40a3846-3a11-4474-8deb-2a4629226afb_wxs_gdc_realn.bam 32382226250 BAM harmonized CPTAC3 01fc1bc7-67bc-4971-ad71-827be0b7a10e dc41625f2db49fcb966b9cd994773a44 {"aliquot_tag": "ALQ_aa1d6a81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03264.MethArray.Green.T C3L-03264 UCEC Methylation_Array tumor CPT0225010006 203561450084_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d104a904-e17c-4988-b51b-42ea4f952123 29799605bf229f81830a654d072ee066 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.MethArray.Red.T C3L-03264 UCEC Methylation_Array tumor CPT0225010006 203561450084_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 62be6484-b666-4156-8b21-dd09d72eca7a 21f47b1ccde3e7747539af6df9870f2f {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.miRNA-Seq.S32_L004_R1.T C3L-03264 UCEC miRNA-Seq tumor CPT0225010009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACTCA_S32_L004_R1_001.unaln.bam 136485059 BAM S32_L004_R1 submitted_unaligned CPTAC3 9b560185-f3f6-4da7-8c82-7faf7f280af4 cc74ec20dbc79354c4ba604df5057ba8 {"aliquot_tag": "ALQ_6290ce85", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.miRNA-Seq.T.hg38 C3L-03264 UCEC miRNA-Seq tumor CPT0225010009 31509de3-c200-4f33-bafe-31bfb8b96f9d_mirnaseq_gdc_realn.bam 159824027 BAM harmonized CPTAC3 625118f8-057b-4499-87d4-81e581a3baf2 1d2273b5193e73077ce28f0d01d56b76 {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.chimeric.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.chimeric.gdc_realn.bam 33074568 BAM chimeric harmonized CPTAC3 fa4dcfb0-abc1-496f-b8b2-9c27077fe7ad 8b6863fb9dbdb1365bdc97e7cbb8b090 {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.chimeric.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.chimeric.gdc_realn.bam 109893385 BAM chimeric harmonized CPTAC3 b697a3d2-68b4-4a98-8041-1e6d7a36650a 49947d80d7672ae6ff5bc13028b8a989 {"aliquot_tag": "ALQ_a4abc9c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.genomic.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.genomic.gdc_realn.bam 7831804669 BAM genomic harmonized CPTAC3 52895fab-4d9f-4e6b-88f6-03a7172961ef ab92698bdd5979d14629ccf719c0322d {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.genomic.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.genomic.gdc_realn.bam 5923501127 BAM genomic harmonized CPTAC3 ef1837c8-9fc8-4b23-b168-878e05c690f5 139677e7a9bbdc3c2806808066c4ed52 {"aliquot_tag": "ALQ_a4abc9c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.S12_L003_R1.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R1_001.fastq.gz 3732369076 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 a886e1ec-e5eb-4ae0-8e6c-80db1f2b2bee eb29fdcf7e7c2313311b10d3413d99a3 {"aliquot_tag": "ALQ_6290ce85", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.S12_L003_R2.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R2_001.fastq.gz 4154435970 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 87e7cbed-df5d-4f19-bccc-ebcaa17a9576 9491705df58a70a11920eb4371fe65e0 {"aliquot_tag": "ALQ_6290ce85", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.S70_R1.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R1_001.fastq.gz 3262610728 FASTQ S70_R1 submitted_unaligned CPTAC3 645ff25d-ffd4-4eee-9e09-5d921e95f431 b3d87a7397c1211461c5280ff2a0630a {"aliquot_tag": "ALQ_a4abc9c7", "sample": "S70", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.S70_R2.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R2_001.fastq.gz 3423913770 FASTQ S70_R2 submitted_unaligned CPTAC3 db2853d7-0b49-47dc-85d3-0b33a2ff9f25 68548b01133b7cddc9adabfc3684003a {"aliquot_tag": "ALQ_a4abc9c7", "sample": "S70", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.transcriptome.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.transcriptome.gdc_realn.bam 11330055890 BAM transcriptome harmonized CPTAC3 df2e6536-afd7-4938-a17f-5e68174659b6 d35c1d72d0dc6d6bd77d916a3abfeab8 {"aliquot_tag": "ALQ_6290ce85", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.RNA-Seq.transcriptome.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.transcriptome.gdc_realn.bam 3580247072 BAM transcriptome harmonized CPTAC3 c55a3272-b124-41b4-9195-ea6039aa0614 7699b582c7fd80d7e939754ffa1bd26b {"aliquot_tag": "ALQ_a4abc9c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.WGS.N C3L-03264 UCEC WGS blood_normal CPT0226020002 CPT0226020002.WholeGenome.RP-1303.bam 73321037730 BAM submitted_aligned CPTAC3 69608827-cd61-4522-b84b-2f5ce6f2352b c211c1697d5f78fc83192b47c4fe251a {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03264.WGS.N.hg38 C3L-03264 UCEC WGS blood_normal CPT0226020002 46030a5a-7f1d-436a-b1b1-ddc24aa61ef4_wgs_gdc_realn.bam 104122387946 BAM harmonized CPTAC3 474412fc-4de6-4cea-bd43-f38b31f26baf bdd18332893d68ec1b1095020116350f {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03264.WGS.T C3L-03264 UCEC WGS tumor CPT0225010006 CPT0225010006.WholeGenome.RP-1303.bam 103278833081 BAM submitted_aligned CPTAC3 4b0f89b4-6416-4ff5-a792-729f1048c08c 32f2029ef3295e5544b578bb6fbc4235 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.WGS.T.hg38 C3L-03264 UCEC WGS tumor CPT0225010006 ed5f633f-2597-4cdc-9eb3-b042173c07ac_wgs_gdc_realn.bam 150339446288 BAM harmonized CPTAC3 4d016a6d-9d48-4a85-8d4f-c148cea78beb 6859bdbde91ef7741d291d56decbc470 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.WXS.N C3L-03264 UCEC WXS blood_normal CPT0226020002 CPT0226020002.WholeExome.RP-1303.bam 19702382027 BAM submitted_aligned CPTAC3 a7bf5154-42b9-444a-a063-de011b091c91 2c22f8f9e3d4dfe913375354c697a988 {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03264.WXS.N.hg38 C3L-03264 UCEC WXS blood_normal CPT0226020002 46030a5a-7f1d-436a-b1b1-ddc24aa61ef4_wxs_gdc_realn.bam 26909055109 BAM harmonized CPTAC3 fd3ea5e9-3317-48ee-acdd-65c6075f2c98 1b46f23da5a22c1e30d172dbc72f1b20 {"aliquot_tag": "ALQ_830a7740", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03264.WXS.T C3L-03264 UCEC WXS tumor CPT0225010006 CPT0225010006.WholeExome.RP-1303.bam 24460399672 BAM submitted_aligned CPTAC3 bcbaae67-7348-4934-a39d-ff68e0084410 fee4e4adf7407de80676dc04a1cb3308 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03264.WXS.T.hg38 C3L-03264 UCEC WXS tumor CPT0225010006 ed5f633f-2597-4cdc-9eb3-b042173c07ac_wxs_gdc_realn.bam 34456174585 BAM harmonized CPTAC3 e2c5ffe6-376e-438a-b923-912685038fe8 1d46f2e41367479961c3af5aa46698d7 {"aliquot_tag": "ALQ_f22fd314", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03266.MethArray.Green.T C3L-03266 GBM Methylation_Array tumor CPT0189460006 203220070217_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 fc8f1d1f-eecf-441f-a7a1-b32570e48117 70c5cb1738956c32b3c596e7df20296e {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.MethArray.Red.T C3L-03266 GBM Methylation_Array tumor CPT0189460006 203220070217_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 769dd25c-9a7a-4303-9cc3-f2f2793628d4 209c705a4150032ebe51a5bc71254d4d {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.miRNA-Seq.S8_L003_R1.T C3L-03266 GBM miRNA-Seq tumor CPT0189460009 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTTGA_S8_L003_R1_001.unaln.bam 302168951 BAM S8_L003_R1 submitted_unaligned CPTAC3 be4e470f-45dc-4741-99d4-4bf9fea3dd20 7db12fbebe27b324d81cf41343182134 {"aliquot_tag": "ALQ_24cc1afa", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.miRNA-Seq.T.hg38 C3L-03266 GBM miRNA-Seq tumor CPT0189460009 49f04fce-230f-4798-bb2a-e20f6a41f617_mirnaseq_gdc_realn.bam 345944161 BAM harmonized CPTAC3 521b7c4f-872c-4172-9210-8d81e968aec4 347264366a5f2e04e1d91f17db9e2ffc {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.RNA-Seq.chimeric.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.chimeric.gdc_realn.bam 54827502 BAM chimeric harmonized CPTAC3 63ab3693-9fdc-4f4b-afb1-c800398d8794 1665978cf525e8df3da43a46d0372c1f {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.RNA-Seq.genomic.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.genomic.gdc_realn.bam 7498932136 BAM genomic harmonized CPTAC3 09ad5bf0-e972-4b4d-867d-f96dc9cad78d a8fe6a4ffac9ae5c25eb34c1e79d02d0 {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.RNA-Seq.S6_L002_R1.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3455029772 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 f21763d0-27de-4280-9b52-0ed9b74804de 0e8a645812512dff3163c67e87db8a32 {"aliquot_tag": "ALQ_24cc1afa", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.RNA-Seq.S6_L002_R2.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3674883650 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 fe6554ca-64ab-4ad1-a3de-c87835c34fc0 c79a53ead4b89a08e305a34eb382f432 {"aliquot_tag": "ALQ_24cc1afa", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.RNA-Seq.transcriptome.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.transcriptome.gdc_realn.bam 8886524920 BAM transcriptome harmonized CPTAC3 f21395c4-457c-4058-b7fb-c2c6a0c9e89a 69e6a038deb23a81746d7e467692166d {"aliquot_tag": "ALQ_24cc1afa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.WGS.N C3L-03266 GBM WGS blood_normal CPT0190220002 CPT0190220002.WholeGenome.RP-1303.bam 60060309110 BAM submitted_aligned CPTAC3 016ad426-e103-4ec3-8a81-b6eab664922e ff6949a31114e58406b2facf331387dc {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03266.WGS.N.hg38 C3L-03266 GBM WGS blood_normal CPT0190220002 8c46cc2e-aa9c-432b-9955-cfc461c71921_wgs_gdc_realn.bam 87485615811 BAM harmonized CPTAC3 f29969cc-8a9e-417b-b2fd-440773b088f9 20a34668abe6f8afe9810b3ac1ec5833 {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03266.WGS.T C3L-03266 GBM WGS tumor CPT0189460006 CPT0189460006.WholeGenome.RP-1303.bam 54351022135 BAM submitted_aligned CPTAC3 ddabb765-cc52-4dec-989d-93d4075268b2 60b27810d71b6f650ead78bb0c742e6c {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.WGS.T.hg38 C3L-03266 GBM WGS tumor CPT0189460006 93e3b8f0-4da0-4bf0-92f6-e1ce3cf9cd2e_wgs_gdc_realn.bam 80672086264 BAM harmonized CPTAC3 f6f0c65f-b2ac-4875-a94a-46eb3494da28 54ee27f4e026f0c52aa512f9e7e9113e {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.WXS.N C3L-03266 GBM WXS blood_normal CPT0190220002 CPT0190220002.WholeExome.RP-1303.bam 20829629921 BAM submitted_aligned CPTAC3 f179cedb-cf5d-40a8-a4a5-a9fe1396241d f084c5f6b09ee70756365a7a2427f4b2 {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03266.WXS.N.hg38 C3L-03266 GBM WXS blood_normal CPT0190220002 8c46cc2e-aa9c-432b-9955-cfc461c71921_wxs_gdc_realn.bam 28498624581 BAM harmonized CPTAC3 655662cf-22cf-4d53-9449-306669ad2d06 9d194181529bc56fd4be0a5efe9389d3 {"aliquot_tag": "ALQ_c9f5c3e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03266.WXS.T C3L-03266 GBM WXS tumor CPT0189460006 CPT0189460006.WholeExome.RP-1303.bam 19587221339 BAM submitted_aligned CPTAC3 8f8a2ced-a32e-4280-ad8b-01a16c529149 a0874df474a6c533d0e3aabfc9686407 {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03266.WXS.T.hg38 C3L-03266 GBM WXS tumor CPT0189460006 93e3b8f0-4da0-4bf0-92f6-e1ce3cf9cd2e_wxs_gdc_realn.bam 27359089699 BAM harmonized CPTAC3 f9047e62-ef8f-4aa4-b43d-5a09f70365db 35f14d7a64649e28ba63b4a398e3a339 {"aliquot_tag": "ALQ_b473076b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.MethArray.Green.A C3L-03268 LUAD Methylation_Array tissue_normal CPT0249490006 203561620043_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 5229182c-7cca-473e-869d-45eb5d012a18 06de34c4f8f143e8e2fa592ad4c3941a {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.MethArray.Green.T C3L-03268 LUAD Methylation_Array tumor CPT0249450006 203561450025_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9940a24c-b821-406c-932e-f062793938de a4d79b0fb5ad5a5f29aee3ca74b17f61 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.MethArray.Red.A C3L-03268 LUAD Methylation_Array tissue_normal CPT0249490006 203561620043_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 16ad42f2-108d-48be-906c-0f4110f223c1 7c6a870bdf7c6bea3f092add2df8f199 {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.MethArray.Red.T C3L-03268 LUAD Methylation_Array tumor CPT0249450006 203561450025_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 64b517d8-4100-4071-98e6-01d61bb982c1 b88a15d9102bd77292e53fcdf51e13c9 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.miRNA-Seq.A.hg38 C3L-03268 LUAD miRNA-Seq tissue_normal CPT0249490009 7a72ba87-c92a-4af0-a444-8e816a8b55bd_mirnaseq_gdc_realn.bam 331123119 BAM harmonized CPTAC3 cfaf4e60-e05e-4345-8b22-ba6512e2d727 1f5f22c6e8eb0b9ddea31f954698f90b {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.miRNA-Seq.S2_L005_R1.A C3L-03268 LUAD miRNA-Seq tissue_normal CPT0249490009 190722_UNC31-K00269_0234_AH7VGTBBXY_GCCAAT_S2_L005_R1_001.unaln.bam 293830307 BAM S2_L005_R1 submitted_unaligned CPTAC3 e31d34e0-9b87-4791-9ed6-437f656f7b73 79e7f43d9eba273e75dde5c2c829b07a {"aliquot_tag": "ALQ_c8bea4a1", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.miRNA-Seq.S34_L004_R1.T C3L-03268 LUAD miRNA-Seq tumor CPT0249450009 190722_UNC31-K00269_0234_AH7VGTBBXY_GACGAC_S34_L004_R1_001.unaln.bam 238202438 BAM S34_L004_R1 submitted_unaligned CPTAC3 803c52be-7c5b-497f-ad61-da31262dbf33 9be7994907c0e4182e9e4182d95f5316 {"aliquot_tag": "ALQ_d4e49a0", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.miRNA-Seq.T.hg38 C3L-03268 LUAD miRNA-Seq tumor CPT0249450009 2c721980-9de0-47f6-9f2f-c39c8f7e8c0a_mirnaseq_gdc_realn.bam 268078730 BAM harmonized CPTAC3 629f7e40-efe1-4e5d-b32b-7501593bd85b e124e24b12e8a138c39a1601b44db66a {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.RNA-Seq.chimeric.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.chimeric.gdc_realn.bam 43283306 BAM chimeric harmonized CPTAC3 ebb44f95-2ee2-4125-92dd-8e15a3236391 22bcf36e707bfed76b74a01f8f6c8c5c {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.RNA-Seq.chimeric.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.chimeric.gdc_realn.bam 37156045 BAM chimeric harmonized CPTAC3 972f1eeb-6753-4a76-addc-2cb08dd41f17 f36b925149dbd396e64e3cb5693d306a {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.RNA-Seq.genomic.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.genomic.gdc_realn.bam 10514093419 BAM genomic harmonized CPTAC3 8b0f2a2b-9330-45db-b290-6f4d6ef114d7 9586e4206f64902b8f1bb940ac0b279b {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.RNA-Seq.genomic.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.genomic.gdc_realn.bam 10314894049 BAM genomic harmonized CPTAC3 b566a24c-75b7-4701-96cb-3006221e41bc 51a3709fd9d8b0cbd7893f6d6af40b6a {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.RNA-Seq.S15_L004_R1.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R1_001.fastq.gz 4220987078 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 322fd04f-febc-43d3-bbb8-ddaf962a08d6 6c5d5546eb633300006b8a71dce89c96 {"aliquot_tag": "ALQ_d4e49a0", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.RNA-Seq.S15_L004_R2.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R2_001.fastq.gz 4806780620 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 ea939946-448c-4142-a18c-ac4b62b5ff82 6d28572206285c1c0472b1f009bd9a38 {"aliquot_tag": "ALQ_d4e49a0", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.RNA-Seq.S18_L005_R1.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R1_001.fastq.gz 3624790822 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 3d49d2b1-e748-45eb-a127-3462adc294de 48d75a12fdcee57407a44af4a6bd206d {"aliquot_tag": "ALQ_c8bea4a1", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.RNA-Seq.S18_L005_R2.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R2_001.fastq.gz 4059327152 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 f3763de5-eccb-463a-9975-dc31fcd7b991 b5908f14eb2652a99de40eca90cf6b17 {"aliquot_tag": "ALQ_c8bea4a1", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.RNA-Seq.transcriptome.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.transcriptome.gdc_realn.bam 7971897414 BAM transcriptome harmonized CPTAC3 09d693f2-5174-4d0c-ba5e-40a1f0dd2815 ef6958aaa78c9499b177998a820d0070 {"aliquot_tag": "ALQ_c8bea4a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.RNA-Seq.transcriptome.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.transcriptome.gdc_realn.bam 9730214610 BAM transcriptome harmonized CPTAC3 ec4d94e5-537e-472f-9237-1f1e7340ec46 fda8363edf8da2c5dd6db670bc883524 {"aliquot_tag": "ALQ_d4e49a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.WGS.N C3L-03268 LUAD WGS blood_normal CPT0240420002 CPT0240420002.WholeGenome.RP-1303.bam 64284532344 BAM submitted_aligned CPTAC3 1cf2b976-9621-453b-b7d8-65c3f4517e71 7f2d624dea87074f8a9d89280e20a69b {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03268.WGS.N.hg38 C3L-03268 LUAD WGS blood_normal CPT0240420002 d4a11072-a2c7-40c4-a547-6f29bd97e7d7_wgs_gdc_realn.bam 94667130219 BAM harmonized CPTAC3 14553bfe-ad05-4a7f-a759-6ea4eca5e83e 176a68fec0cf8fcb5cace076a7520d18 {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03268.WGS.T C3L-03268 LUAD WGS tumor CPT0249450006 CPT0249450006.WholeGenome.RP-1303.bam 67269590278 BAM submitted_aligned CPTAC3 d178848d-fefc-4635-b806-06c2136690f2 e17faf287efdd85dbcfe1cc48e1c1bfc {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.WGS.T.hg38 C3L-03268 LUAD WGS tumor CPT0249450006 d49c7553-0062-4add-ab9e-4462b7a8c030_wgs_gdc_realn.bam 99319524451 BAM harmonized CPTAC3 1514eb13-3cb8-4aef-91ea-1d8918d3267a c5acdb1f9167334d877a7da9fe515df0 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.WXS.A C3L-03268 LUAD WXS tissue_normal CPT0249490006 CPT0249490006.WholeExome.RP-1303.bam 22332552079 BAM submitted_aligned CPTAC3 4a5c7d53-5f29-4097-b696-50953c17a0e6 4aee07f05c70f2732b5e56b21704cde7 {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.WXS.A.hg38 C3L-03268 LUAD WXS tissue_normal CPT0249490006 cfa05a25-561e-4e4c-846e-b8b4c80bb8bf_wxs_gdc_realn.bam 31139622335 BAM harmonized CPTAC3 ca473d88-2e69-494f-89f7-f6a35a61da69 cbda2684d71892fae62493ebe4416a66 {"aliquot_tag": "ALQ_5801b930", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03268.WXS.N C3L-03268 LUAD WXS blood_normal CPT0240420002 CPT0240420002.WholeExome.RP-1303.bam 24644178728 BAM submitted_aligned CPTAC3 abe8539c-1dab-4ba9-bdc1-4ce36f949c83 d984e8831567ce691e14f7a3003ee625 {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03268.WXS.N.hg38 C3L-03268 LUAD WXS blood_normal CPT0240420002 d4a11072-a2c7-40c4-a547-6f29bd97e7d7_wxs_gdc_realn.bam 34068815146 BAM harmonized CPTAC3 07c4ff2f-d0d6-41e6-83d9-6d1da73ca4fb c4f7384a931e0290b8951bfd0a98a233 {"aliquot_tag": "ALQ_bd2409eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03268.WXS.T C3L-03268 LUAD WXS tumor CPT0249450006 CPT0249450006.WholeExome.RP-1303.bam 20154849484 BAM submitted_aligned CPTAC3 f1632453-1613-4db2-abac-17aaeac4df87 e4da541f3b410077c303c1a1695b07c6 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03268.WXS.T.hg38 C3L-03268 LUAD WXS tumor CPT0249450006 d49c7553-0062-4add-ab9e-4462b7a8c030_wxs_gdc_realn.bam 28193452459 BAM harmonized CPTAC3 488ea73b-b9e9-4682-9282-1bc3f466a6c4 6869143abd6bfb05a6203e91e0aeda20 {"aliquot_tag": "ALQ_9df15431", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.MethArray.Green.A C3L-03271 LUAD Methylation_Array tissue_normal CPT0225280010 203561450025_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ebec4b55-a203-4312-8b70-0b6ccc54577a 23cb1bca90d095688aca1b75e8f6ccc7 {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.MethArray.Green.T C3L-03271 LUAD Methylation_Array tumor CPT0225190007 203561620072_R04C01_Grn.idat 13676227 IDAT Green NA CPTAC3 6bdcd2ac-909e-4d3b-87ac-3ef6a5d5853d 814f9635a6fd6e86e13a1b485a74e270 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.MethArray.Red.A C3L-03271 LUAD Methylation_Array tissue_normal CPT0225280010 203561450025_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 2166dbca-0b58-4206-9294-bd92de920351 61042aa4c40964dbceb4653800abd637 {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.MethArray.Red.T C3L-03271 LUAD Methylation_Array tumor CPT0225190007 203561620072_R04C01_Red.idat 13676227 IDAT Red NA CPTAC3 2a385e99-ac98-4650-8e06-a95b0b9ef347 cfd131dab1e15b45e4f7ccb6c7560a19 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.miRNA-Seq.A.hg38 C3L-03271 LUAD miRNA-Seq tissue_normal CPT0225280007 0914f7dd-7139-47c2-892b-43d6501d4f17_mirnaseq_gdc_realn.bam 331571692 BAM harmonized CPTAC3 8c783aee-8722-4ece-afe5-fcf30530c42a a0aa56e9f6ca24018a7abe53ec238e1f {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.miRNA-Seq.S15_L007_R1.A C3L-03271 LUAD miRNA-Seq tissue_normal CPT0225280007 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGAAA_S15_L007_R1_001.unaln.bam 299057474 BAM S15_L007_R1 submitted_unaligned CPTAC3 fbebcf72-2e90-4198-b30f-3894e6182419 29f58fa372b820a26e1e35be7fbe4da8 {"aliquot_tag": "ALQ_c5f020f8", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.miRNA-Seq.S27_L004_R1.T C3L-03271 LUAD miRNA-Seq tumor CPT0225190010 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGGCG_S27_L004_R1_001.unaln.bam 151621433 BAM S27_L004_R1 submitted_unaligned CPTAC3 b4d1016f-1e1c-4e7d-95c1-5a56ba140e9f 6c6d1fc51070940b370355e76d9e7a8b {"aliquot_tag": "ALQ_f97bdf04", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.miRNA-Seq.T.hg38 C3L-03271 LUAD miRNA-Seq tumor CPT0225190010 e7773cfa-65bc-4176-9d4f-e1087291aca2_mirnaseq_gdc_realn.bam 169617939 BAM harmonized CPTAC3 3753a559-a062-4365-854c-8e195e0b14c3 c706a2626255c38a8e49e3919f0b78ab {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.RNA-Seq.chimeric.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.chimeric.gdc_realn.bam 37235014 BAM chimeric harmonized CPTAC3 cdc3b4bc-f8e1-48d1-80a2-976e340fca85 d87ae0de23ff81958a668b10736653d3 {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.RNA-Seq.chimeric.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.chimeric.gdc_realn.bam 30879641 BAM chimeric harmonized CPTAC3 56d72691-8473-4974-a69d-1b8f94812768 8456bc6dfab9be5c3b5ce70221373343 {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.RNA-Seq.genomic.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.genomic.gdc_realn.bam 14420673516 BAM genomic harmonized CPTAC3 3f19e45e-62f4-4dcb-a02e-81558d042a62 d4a1ab837a33499db84d8e206649e18d {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.RNA-Seq.genomic.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.genomic.gdc_realn.bam 12669772118 BAM genomic harmonized CPTAC3 ad9d9285-cbf7-4b24-802e-25a9c2f38a96 65ac7927603a195c5239338bfef80392 {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.RNA-Seq.S23_L006_R1.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R1_001.fastq.gz 4140273095 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 a27e5b8d-8802-4454-b093-45e318d4f588 1988fb0a38b1c3f7408f259d8f579466 {"aliquot_tag": "ALQ_f97bdf04", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.RNA-Seq.S23_L006_R2.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R2_001.fastq.gz 4770824757 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 2d8514dd-2d1b-415c-8714-c0dc66a7d707 3596eb6a2969f74de8d4fd8d10aa10a3 {"aliquot_tag": "ALQ_f97bdf04", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.RNA-Seq.S25_L007_R1.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R1_001.fastq.gz 5350308225 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 71251649-e452-4738-98ec-25ff0022037c 04ad0e6fa307c15e041b6aa210ed275e {"aliquot_tag": "ALQ_c5f020f8", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.RNA-Seq.S25_L007_R2.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R2_001.fastq.gz 5619188959 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 16276d67-c5b4-4b5f-b4d8-8c70205baf09 71923716114a7f6d4c5a89e5798a0e49 {"aliquot_tag": "ALQ_c5f020f8", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.RNA-Seq.transcriptome.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.transcriptome.gdc_realn.bam 11940946908 BAM transcriptome harmonized CPTAC3 1ed2773a-d33d-4bc1-92ac-e1a85cd5ab97 0f1184362679e2531d16aaa5e6e7e805 {"aliquot_tag": "ALQ_c5f020f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.RNA-Seq.transcriptome.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.transcriptome.gdc_realn.bam 9807412864 BAM transcriptome harmonized CPTAC3 df6ad7fe-b1b1-4e9e-ae70-1364f3cbba2e d9610560d69ccbcf6578b470d0dad9eb {"aliquot_tag": "ALQ_f97bdf04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.WGS.N C3L-03271 LUAD WGS blood_normal CPT0226040002 CPT0226040002.WholeGenome.RP-1303.bam 56444883358 BAM submitted_aligned CPTAC3 38f3ed16-c0ad-45d4-ab38-7eafcec00789 2d8b9f9c3753f8721b39104c6c80d726 {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03271.WGS.N.hg38 C3L-03271 LUAD WGS blood_normal CPT0226040002 561e422d-e4db-4213-8bde-505d3cf49cf7_wgs_gdc_realn.bam 84228170736 BAM harmonized CPTAC3 1699c142-456b-460d-8ae0-7c8eddbb1d4d e4006a6af60f7dbeb65dc325aefd1c3d {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03271.WGS.T C3L-03271 LUAD WGS tumor CPT0225190007 CPT0225190007.WholeGenome.RP-1303.bam 53010533979 BAM submitted_aligned CPTAC3 9f195a04-4c8b-45dd-a0cd-e02ef49eaea7 820b1003d678cf2a7beff6e1d3b714a5 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.WGS.T.hg38 C3L-03271 LUAD WGS tumor CPT0225190007 ce89aed6-750b-4d18-8f28-d4940dc0b546_wgs_gdc_realn.bam 76853161899 BAM harmonized CPTAC3 2f96c07e-aa95-4164-8293-c59b1866b6aa 98bb2e45b0931983cf65bef3b9a04526 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.WXS.A C3L-03271 LUAD WXS tissue_normal CPT0225280010 CPT0225280010.WholeExome.RP-1303.bam 20203561055 BAM submitted_aligned CPTAC3 f2a4f9c2-6d57-464b-bb56-f98e8da6427f a4a04e8be4ad0a17c071582cbca5b28a {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.WXS.A.hg38 C3L-03271 LUAD WXS tissue_normal CPT0225280010 8edc9d2b-08fc-4f02-bf6f-be4dbb5409f7_wxs_gdc_realn.bam 27814325035 BAM harmonized CPTAC3 ff2b0e82-c064-43da-a94f-df99093a9941 10ab481593944207c744acd2c484a821 {"aliquot_tag": "ALQ_428f841a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03271.WXS.N C3L-03271 LUAD WXS blood_normal CPT0226040002 CPT0226040002.WholeExome.RP-1303.bam 23867132746 BAM submitted_aligned CPTAC3 fe077ed2-7d07-4b18-abb1-062cd3f1be13 759c3934bdcb1edf9d79655e32e3f48f {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03271.WXS.N.hg38 C3L-03271 LUAD WXS blood_normal CPT0226040002 561e422d-e4db-4213-8bde-505d3cf49cf7_wxs_gdc_realn.bam 32909584549 BAM harmonized CPTAC3 e04a60d6-16f7-4194-a160-cec7e0aecf24 b538105ec6827b57c39443eddb14ea2d {"aliquot_tag": "ALQ_c4a82e0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03271.WXS.T C3L-03271 LUAD WXS tumor CPT0225190007 CPT0225190007.WholeExome.RP-1303.bam 21984872323 BAM submitted_aligned CPTAC3 176de7f4-427a-4684-b595-9d724542483f df127428ce1bbec45019675787f18fdc {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03271.WXS.T.hg38 C3L-03271 LUAD WXS tumor CPT0225190007 ce89aed6-750b-4d18-8f28-d4940dc0b546_wxs_gdc_realn.bam 30442895664 BAM harmonized CPTAC3 5132dfb4-2478-4eb4-80c0-64dd44f603f6 2871a4fcd5bf47397c646f184f2051d1 {"aliquot_tag": "ALQ_7e047be6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.MethArray.Green.A C3L-03272 LSCC Methylation_Array tissue_normal CPT0225470006 203219650156_R06C01_Grn.idat 13676217 IDAT Green NA CPTAC3 a13f0314-2209-4dd5-b81f-a4fdea609f59 5f1915bea9745cc84f7486f8c21c0b38 {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.MethArray.Green.T C3L-03272 LSCC Methylation_Array tumor CPT0225380006 203220070217_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f569b336-f77a-4f2a-b7fb-8225bd25ba51 13b5892f8e60d32f6817615115270f07 {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.MethArray.Red.A C3L-03272 LSCC Methylation_Array tissue_normal CPT0225470006 203219650156_R06C01_Red.idat 13676217 IDAT Red NA CPTAC3 8119bd8e-f3a2-41a3-8442-79eef812ce50 8060779643f6a5205a8b533bffd5e9f7 {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.MethArray.Red.T C3L-03272 LSCC Methylation_Array tumor CPT0225380006 203220070217_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 f0ed0d45-8640-41dc-8055-33f22db4a0e3 ec36be01e9f5b6275d3ac4d75bdb65b5 {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.miRNA-Seq.A.hg38 C3L-03272 LSCC miRNA-Seq tissue_normal CPT0225470009 1f753661-d7bd-470d-ad23-647a9e985c91_mirnaseq_gdc_realn.bam 200789398 BAM harmonized CPTAC3 701702b3-44c5-4a62-abb7-4e2c05ac9e1e 11116a9576c535fa8aeb1a6c2b764cbc {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.miRNA-Seq.S35_L002_R1.T C3L-03272 LSCC miRNA-Seq tumor CPT0225380009 190206_UNC31-K00269_0191_AH2WY5BBXY_AGTTCC_S35_L002_R1_001.unaln.bam 180079119 BAM S35_L002_R1 submitted_unaligned CPTAC3 5804b0c5-1908-4bb4-9508-bcd702cb0527 3f917a1771e16e51cea1f79f92550b51 {"aliquot_tag": "ALQ_e914de5a", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.miRNA-Seq.S8_L005_R1.A C3L-03272 LSCC miRNA-Seq tissue_normal CPT0225470009 190206_UNC31-K00269_0191_AH2WY5BBXY_TACAGC_S8_L005_R1_001.unaln.bam 178883247 BAM S8_L005_R1 submitted_unaligned CPTAC3 779675ea-ff8c-4dbd-a562-12cd3e846d8a fa0ee0e7c8c45fb1731c988895de34c3 {"aliquot_tag": "ALQ_76417933", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.miRNA-Seq.T.hg38 C3L-03272 LSCC miRNA-Seq tumor CPT0225380009 6cf6e03d-a0c8-44e1-9042-818d91caaed7_mirnaseq_gdc_realn.bam 197771145 BAM harmonized CPTAC3 bd504555-de8d-4a88-b7c1-6c70ddc6b123 c2862a1d063bed9fce80514ad760b9ed {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.RNA-Seq.chimeric.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.chimeric.gdc_realn.bam 253078786 BAM chimeric harmonized CPTAC3 d102c27e-1a15-4efd-b527-80034ed4432d bc03e81e9c1c08f3e18c2a410d038e12 {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.RNA-Seq.chimeric.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.chimeric.gdc_realn.bam 96330892 BAM chimeric harmonized CPTAC3 bd278d8e-2e0e-4388-8722-474eb7c4dda5 de811c8f30af530601552e289acb3237 {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.RNA-Seq.genomic.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.genomic.gdc_realn.bam 7316808543 BAM genomic harmonized CPTAC3 aac736d7-660e-4eff-9147-ccb1222c0bdf b47d7a807936e0b7c534a0cd8b0aeaf0 {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.RNA-Seq.genomic.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.genomic.gdc_realn.bam 9362922043 BAM genomic harmonized CPTAC3 b5ec089e-37f6-422a-8074-5a61272ca003 169dad94e766237f7c313f3a7410591c {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.RNA-Seq.S21_L006_R1.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3938286963 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 ade6ad8e-5427-41bf-b2b3-338c7b40c786 1d7e4a316b51f94d0ed35c127234f248 {"aliquot_tag": "ALQ_e914de5a", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.RNA-Seq.S21_L006_R2.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4212220666 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 3f88a9da-1dcb-47f7-9081-5247432544a8 c53a54c435f41b3d87be9d1ec073d159 {"aliquot_tag": "ALQ_e914de5a", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.RNA-Seq.S8_L002_R1.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R1_001.fastq.gz 3483728600 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 4c8a1673-4bc1-4b47-9166-27890c2664ea cd250600faf22515680e86a2881f33b4 {"aliquot_tag": "ALQ_76417933", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.RNA-Seq.S8_L002_R2.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R2_001.fastq.gz 3777452158 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 47bf26e4-b41b-40a3-b114-29cdb58d698b aaa8f081fe3230bde47305b42fb8bbe1 {"aliquot_tag": "ALQ_76417933", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.RNA-Seq.transcriptome.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.transcriptome.gdc_realn.bam 8306796368 BAM transcriptome harmonized CPTAC3 2f1c6935-ca6d-492b-9156-36c00efcc1ec e658b79ea0ebf143f26ccbc21a8f78d1 {"aliquot_tag": "ALQ_76417933", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.RNA-Seq.transcriptome.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.transcriptome.gdc_realn.bam 9175863567 BAM transcriptome harmonized CPTAC3 2a04871f-0c4f-40a8-bbe4-04e2598cad34 552373a2349e6e69f887eac30fcc71f6 {"aliquot_tag": "ALQ_e914de5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.WGS.N C3L-03272 LSCC WGS blood_normal CPT0226050002 CPT0226050002.WholeGenome.RP-1303.bam 63386228227 BAM submitted_aligned CPTAC3 45d39836-6084-462c-9ba7-7b1430718e9f 1e531da9fda0a65fa924b8dd22387abb {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03272.WGS.N.hg38 C3L-03272 LSCC WGS blood_normal CPT0226050002 463e4a08-38ab-408f-ac18-8f6899380f8c_wgs_gdc_realn.bam 92663627417 BAM harmonized CPTAC3 34b966ea-7310-4aad-ab2f-3abbff502e84 2e84a4d5da0d4cb2b5c0cefab5b37e5a {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03272.WGS.T C3L-03272 LSCC WGS tumor CPT0225380006 CPT0225380006.WholeGenome.RP-1303.bam 57055313234 BAM submitted_aligned CPTAC3 ecc4960c-f567-42e1-83c6-31f7eaa413bc c1aefb4c0e92cc3714aad8bd7b7e4c9d {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.WGS.T.hg38 C3L-03272 LSCC WGS tumor CPT0225380006 8f3cb724-0fdf-4d28-ae78-bd024cc7ca04_wgs_gdc_realn.bam 82136878579 BAM harmonized CPTAC3 72f758cf-917a-4a95-b714-d422e6c58128 a3ce871691fa0df04223cf690ae92585 {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.WXS.A C3L-03272 LSCC WXS tissue_normal CPT0225470006 CPT0225470006.WholeExome.RP-1303.bam 17782765021 BAM submitted_aligned CPTAC3 e5b57549-aea7-4344-83e4-190d98896d77 2c01ffb0c88bc0529de2ae2ff1a5f9ab {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.WXS.A.hg38 C3L-03272 LSCC WXS tissue_normal CPT0225470006 78196cf9-b1f2-4012-845b-8b209e03266d_wxs_gdc_realn.bam 25034527970 BAM harmonized CPTAC3 3e72ebdb-d4f1-4684-a09a-b7574d6dd91e aef6f00e059396dca89c08218cae21a9 {"aliquot_tag": "ALQ_e6fe64a2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03272.WXS.N C3L-03272 LSCC WXS blood_normal CPT0226050002 CPT0226050002.WholeExome.RP-1303.bam 29679809774 BAM submitted_aligned CPTAC3 856ca94b-8300-41d8-994c-20c3eeca3e4c 50e437dfb615676617d7649ef03b2837 {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03272.WXS.N.hg38 C3L-03272 LSCC WXS blood_normal CPT0226050002 463e4a08-38ab-408f-ac18-8f6899380f8c_wxs_gdc_realn.bam 41000207872 BAM harmonized CPTAC3 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 98a48805103196244da62e5f7344276a {"aliquot_tag": "ALQ_312aab50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03272.WXS.T C3L-03272 LSCC WXS tumor CPT0225380006 CPT0225380006.WholeExome.RP-1303.bam 17959482942 BAM submitted_aligned CPTAC3 a6d2bf7e-f2ed-40fa-b80f-53019e9ac4a7 0a15a2cda3703782c1fa88a7214c690e {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03272.WXS.T.hg38 C3L-03272 LSCC WXS tumor CPT0225380006 8f3cb724-0fdf-4d28-ae78-bd024cc7ca04_wxs_gdc_realn.bam 25283322306 BAM harmonized CPTAC3 caaab6de-d522-4508-aca4-9451506e9692 2bc702bcdee2a92d91755b1f3c7cbf7c {"aliquot_tag": "ALQ_79abc3cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03303.MethArray.Green.Tpb C3L-03303 AML Methylation_Array tumor_peripheral_blood CPT0414490002 205987780161_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3c746d14-c96f-46b0-b8ec-7150a30f73b4 eca82677fb3d862fb645c6562e2b54a8 {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.MethArray.Red.Tpb C3L-03303 AML Methylation_Array tumor_peripheral_blood CPT0414490002 205987780161_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 57a15697-2ae0-4f35-b7ab-c6391e499a95 7e38a4f29a54c8886316aa4a8251f56f {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.miRNA-Seq.S11_L003_R1.Tpb C3L-03303 AML miRNA-Seq tumor_peripheral_blood CPT0414520002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L003_R1_001.unaln.bam 282194409 BAM S11_L003_R1 submitted_unaligned CPTAC3 6e805926-0975-4c86-ae8b-e4665e79954d a3272b032c3685d07cf5a1b23420ba24 {"aliquot_tag": "ALQ_b9cd89b3", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.miRNA-Seq.Tpb.hg38 C3L-03303 AML miRNA-Seq tumor_peripheral_blood CPT0414520002 757e7d74-2d01-43bf-8f38-d063afe5a8b9_mirnaseq_gdc_realn.bam 310143403 BAM harmonized CPTAC3 24b38240-fcf1-4c27-884e-0ca158e542a5 6dae08189d500d1a1cc967679f8930fc {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.RNA-Seq.chimeric.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.chimeric.gdc_realn.bam 720730740 BAM chimeric harmonized CPTAC3 dfb307f3-ca94-4f41-b865-73d823cbb3ee 270e8ab24e9702f475cbe161e38ddc69 {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.RNA-Seq.genomic.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.genomic.gdc_realn.bam 8926090323 BAM genomic harmonized CPTAC3 d4a4eecb-56a8-4c25-9d8b-6210069b382b 3ec8c52cbc385ff8e5d8a77626390051 {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.RNA-Seq.S31_L008_R1.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R1_001.fastq.gz 4200665380 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 50e07cc2-4c18-4b66-ad49-40c0ddb33156 b9d158f5e68292a564faf233b4f76051 {"aliquot_tag": "ALQ_b9cd89b3", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.RNA-Seq.S31_L008_R2.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R2_001.fastq.gz 4733354512 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 676f819f-ab8a-4d67-b924-4ea85853f451 b2fc6c0ca1f4eb940fd6f169611e5085 {"aliquot_tag": "ALQ_b9cd89b3", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.RNA-Seq.transcriptome.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.transcriptome.gdc_realn.bam 9364830277 BAM transcriptome harmonized CPTAC3 0a642937-c5d7-4320-aed3-7a8db2d34f2c 2d40ed896698de8e3d98dba058416d26 {"aliquot_tag": "ALQ_b9cd89b3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.WGS.Nbc C3L-03303 AML WGS buccal_normal CPT0414470001 CPT0414470001.WholeGenome.RP-2158.bam 37979169924 BAM submitted_aligned CPTAC3 6b894c3e-cf42-49f4-a10a-876d5e5f9aca 7b082a3f310c055bc77d8286d5a8c58b {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03303.WGS.Nbc.hg38 C3L-03303 AML WGS buccal_normal CPT0414470001 60ad18a7-b6b0-4584-b7c8-9eb861605047_wgs_gdc_realn.bam 112880245115 BAM harmonized CPTAC3 5d5ffeab-8fde-4425-b4c2-709184c3574e 1f94d3e7b7422c98abe77f383df7bdad {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03303.WGS.Tpb C3L-03303 AML WGS tumor_peripheral_blood CPT0414490002 CPT0414490002.WholeGenome.RP-2158.bam 45890699294 BAM submitted_aligned CPTAC3 c26f61d4-c87f-48c3-bcfd-6fe29e929ef3 e5858cb207a1173ffe1d33afd2d6ee7d {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.WGS.Tpb.hg38 C3L-03303 AML WGS tumor_peripheral_blood CPT0414490002 c5b83617-a80e-4728-90dc-840cc19cda6a_wgs_gdc_realn.bam 133305371881 BAM harmonized CPTAC3 941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6 3ae224b734d259d6cede14bc5964c80d {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.WXS.Nbc C3L-03303 AML WXS buccal_normal CPT0414470001 CPT0414470001.WholeExome.RP-1303.bam 25664195896 BAM submitted_aligned CPTAC3 9dc9d029-df01-42cc-8500-766140a152ab 0e4653625660ff13719309528373ab57 {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03303.WXS.Nbc.hg38 C3L-03303 AML WXS buccal_normal CPT0414470001 60ad18a7-b6b0-4584-b7c8-9eb861605047_wxs_gdc_realn.bam 34925074666 BAM harmonized CPTAC3 709ebea2-6679-4120-bbc8-0f5a280cdb95 807ddedd9279fbd7aad4b25c7d88eb48 {"aliquot_tag": "ALQ_237884dc", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-03303.WXS.Tpb C3L-03303 AML WXS tumor_peripheral_blood CPT0414490002 CPT0414490002.WholeExome.RP-1303.bam 24404684691 BAM submitted_aligned CPTAC3 26853a73-4452-4e19-957b-11d89263cd87 2d3222d682106f237398cc868bc91255 {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-03303.WXS.Tpb.hg38 C3L-03303 AML WXS tumor_peripheral_blood CPT0414490002 c5b83617-a80e-4728-90dc-840cc19cda6a_wxs_gdc_realn.bam 33925470072 BAM harmonized CPTAC3 44aaaeb7-0526-4976-b170-77b2b1f02b45 40ed2bd25a30535bdc471d69f5d02386 {"aliquot_tag": "ALQ_5416b07", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-03308.MethArray.Green.Tbm C3L-03308 AML Methylation_Array tumor_bone_marrow CPT0201550002 203561450062_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0c11ab8a-4434-4fb3-ae62-f9b65ff88dbc f7c2642b13d9e6cba9527a1edde1f36f {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.MethArray.Red.Tbm C3L-03308 AML Methylation_Array tumor_bone_marrow CPT0201550002 203561450062_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 8727e07e-dbe8-46b6-94bf-3a4b1b0733ea f595cb8f6676e90c3e960acd67bfd576 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.miRNA-Seq.S30_L002_R1.Tbm C3L-03308 AML miRNA-Seq tumor_bone_marrow CPT0201560002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACCGG_S30_L002_R1_001.unaln.bam 135963073 BAM S30_L002_R1 submitted_unaligned CPTAC3 4eee79eb-a538-454e-8c77-f02952673c81 d624a64c348db950bd12aad76a8bfd13 {"aliquot_tag": "ALQ_a1c579c0", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.miRNA-Seq.Tbm.hg38 C3L-03308 AML miRNA-Seq tumor_bone_marrow CPT0201560002 b9d486cc-3fc5-4127-a3d6-ea2d68f0dc26_mirnaseq_gdc_realn.bam 150552262 BAM harmonized CPTAC3 e89d846c-336b-4890-8163-273e0fe05b81 b09c01ce756f891be3e837348a80cf2a {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.RNA-Seq.chimeric.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.chimeric.gdc_realn.bam 42592438 BAM chimeric harmonized CPTAC3 3a7fc045-c50c-4d21-a8c8-59098d75b815 5e7585e38d08c0246ce434ab1bc839a6 {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.RNA-Seq.genomic.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.genomic.gdc_realn.bam 8650664066 BAM genomic harmonized CPTAC3 b4fc4964-447d-4c92-b223-7b4122492ca9 35d29621034e6ce9d13ea1f7bd18b1dc {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.RNA-Seq.S1_L007_R1.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R1_001.fastq.gz 4245443481 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 0e16aef5-04b8-4503-a905-e437485f08fa d408e26b84bd69e6ee2a63777abdb225 {"aliquot_tag": "ALQ_a1c579c0", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.RNA-Seq.S1_L007_R2.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R2_001.fastq.gz 4634091106 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 67adf4d2-b1a4-45a3-b423-04aeeff6e2b4 7f8beacbba61c981e89afef002e592d4 {"aliquot_tag": "ALQ_a1c579c0", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.RNA-Seq.transcriptome.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.transcriptome.gdc_realn.bam 9642603748 BAM transcriptome harmonized CPTAC3 5fb87a64-20bb-419f-b162-940eb4768e62 06ff47cf2c379faca727a6246dd0cf82 {"aliquot_tag": "ALQ_a1c579c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002_1 CPT0201630002_1.WholeGenome.RP-1303.bam 68138136147 BAM submitted_aligned CPTAC3 bc8e886d-54bf-4641-accb-ebbf1ad63d9c 807e2c69cd4858371a6492c2c238e589 {"aliquot_tag": "ALQ_13b0c409", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002 CPT0201630002.WholeGenome.RP-1303.bam 24596099382 BAM submitted_aligned CPTAC3 85acc293-6c11-497e-8049-76327f5ec0b0 e0bb0b766ab2ef44625e416031dd9864 {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03308.WGS.Nbc.hg38 C3L-03308 AML WGS buccal_normal CPT0201630002_1 476f0761-cd64-4f7e-bad6-db1a1d997d02_wgs_gdc_realn.bam 95794248461 BAM harmonized CPTAC3 3f006696-9c85-46f6-80cb-a65dd4242e8f 595bbdab35a6b3ea7987bb2ba85d5d38 {"aliquot_tag": "ALQ_13b0c409", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-03308.WGS.Nbc.hg38 C3L-03308 AML WGS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wgs_gdc_realn.bam 33707667964 BAM harmonized CPTAC3 443cebb5-a542-4866-9e67-df805b839012 45247c1120bcbd60c050145d4841a1bf {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002_1 CPT0201550002_1.WholeGenome.RP-1303.bam 80526632719 BAM submitted_aligned CPTAC3 45ce3ee1-1993-4b8b-a694-4c00f90d8c79 fd0e933949c6bc9b1f300317268d9e31 {"aliquot_tag": "ALQ_feeff6d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeGenome.RP-1303.bam 23177226613 BAM submitted_aligned CPTAC3 831dd319-1f30-4547-b465-65f33299a36c 7ed4ffb7d9bb11d532084d0efeaf558c {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.WGS.Tbm.hg38 C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wgs_gdc_realn.bam 32052472043 BAM harmonized CPTAC3 0853efaa-8886-4b5c-96ce-547b63abbc8f 2b6f623f6d8a4f0da4fa1ec56d040503 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.WGS.Tbm.hg38 C3L-03308 AML WGS tumor_bone_marrow CPT0201550002_1 73edd824-ca93-4839-a578-85e319e4b18c_wgs_gdc_realn.bam 117015182430 BAM harmonized CPTAC3 25391a83-7490-48ab-983b-d9df97c1b398 8ea94993ecee621d3feb238ed6a808a5 {"aliquot_tag": "ALQ_feeff6d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-03308.WXS.Nbc C3L-03308 AML WXS buccal_normal CPT0201630002 CPT0201630002.WholeExome.RP-1303.bam 24596099450 BAM submitted_aligned CPTAC3 5c350146-7466-48a4-949f-f570df1aa3e1 1888a9762a880130611a0180727800d1 {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03308.WXS.Nbc.hg38 C3L-03308 AML WXS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wxs_gdc_realn.bam 33863986000 BAM harmonized CPTAC3 9ea0ec47-41c9-4b2e-badb-ccfd4979751a 54d599e0a52fac7f3ba86f66a57866be {"aliquot_tag": "ALQ_efb1841e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03308.WXS.Tbm C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeExome.RP-1303.bam 23177226677 BAM submitted_aligned CPTAC3 89398d58-6aff-4b44-aee1-b4a1be711054 8a7eae1f421b9e4cc549887e7d14af57 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03308.WXS.Tbm.hg38 C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wxs_gdc_realn.bam 32380906747 BAM harmonized CPTAC3 0d6b19e7-cafc-43e4-9401-37a8da579764 6f15826e0d25dcf5b08ceabcd7b20ae3 {"aliquot_tag": "ALQ_e6650310", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03348.ANN_98be90a2.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.chimeric.gdc_realn.bam 314214514 BAM chimeric harmonized CPTAC3 6b6fb99f-3474-4615-b5f2-e3f4b5e55033 a73512ee60bff2b82e5beefb3871d4bf {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.ANN_98be90a2.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.genomic.gdc_realn.bam 9687156277 BAM genomic harmonized CPTAC3 dab4d8ce-dd55-4677-afe7-0027144af27f 0d3919e8c8865e726a8cb39a89614577 {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.ANN_98be90a2.RNA-Seq.S8_L007_R1.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R1_001.fastq.gz 4346927555 FASTQ S8_L007_R1 submitted_unaligned CPTAC3 cb4f0584-8ef0-4ed0-b10c-9b7e00aab287 27b9d71bb74d9cc28ef112766a28bf50 {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.ANN_98be90a2.RNA-Seq.S8_L007_R2.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R2_001.fastq.gz 4807680903 FASTQ S8_L007_R2 submitted_unaligned CPTAC3 39cef4d2-3d3c-4e64-b7c0-2ee3c22a2606 9defce0f036eacb880d54011a6c6f899 {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.ANN_98be90a2.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.transcriptome.gdc_realn.bam 12188193584 BAM transcriptome harmonized CPTAC3 9d3c5011-07c0-4bd0-b6d4-c267b3bd54b6 351c275d0c26486d943f67ca0e86dafe {"aliquot_tag": "ANN_98be90a2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_4617bbc8.RNA-Seq.chimeric.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.chimeric.gdc_realn.bam 30087846 BAM chimeric harmonized CPTAC3 aaefad92-577e-43de-ab97-ac266ef1a04d 2f790faa1e970666f2779c7d645b398d {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03348.DUP_4617bbc8.RNA-Seq.genomic.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.genomic.gdc_realn.bam 10189903240 BAM genomic harmonized CPTAC3 76bfe873-357b-4979-893d-a1b70718f0e2 4fa177ead115afdb1f61b53cddfdf566 {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03348.DUP_4617bbc8.RNA-Seq.S1_L001_R1.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 3568113260 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 12e19f35-3916-421f-bfe4-db8e45c480cc aa30e5444d6bacf1b607a28852a8f28e {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03348.DUP_4617bbc8.RNA-Seq.S1_L001_R2.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 3989549862 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 0c7bd6f6-18ea-46d7-9aaf-49c340317959 6fd92c331911070fd11ef1d3482449cc {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03348.DUP_4617bbc8.RNA-Seq.transcriptome.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.transcriptome.gdc_realn.bam 9036536267 BAM transcriptome harmonized CPTAC3 e677e8ed-2640-4c44-9181-026a5026fb36 9197c5e3271667baf3223b98c28dac01 {"aliquot_tag": "DUP_4617bbc8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03348.DUP_505ac1bb.WXS.N C3L-03348 PDA WXS blood_normal CPT0167070002 CPT0167070002.WholeExome.RP-1303.bam 42037102862 BAM submitted_aligned CPTAC3 176e20b6-b16a-497e-b32c-1154a654b0b7 8ae0ca31e853bfba68491662cbf26235 {"aliquot_tag": "DUP_505ac1bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03348.DUP_505ac1bb.WXS.N.hg38 C3L-03348 PDA WXS blood_normal CPT0167070002 6d3fd32e-c0cb-4a4f-818b-b3d74b39567f_wxs_gdc_realn.bam 58398956401 BAM harmonized CPTAC3 b3a30b22-91ff-4ed5-a5f4-06a07d5353bc f343803c11ac5c4b12c44223f701b7a5 {"aliquot_tag": "DUP_505ac1bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03348.DUP_76b0f18e.WXS.T C3L-03348 PDA WXS tumor CPT0167050033 CPT0167050033.WholeExome.RP-1303.bam 23213012681 BAM submitted_aligned CPTAC3 4839a720-851b-4bfe-bd3f-a1e5f4ee78ef 6ee483cdcd638e6a4d1c26a12623371c {"aliquot_tag": "DUP_76b0f18e", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_76b0f18e.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050033 9dcf8cb9-1927-4b2b-a6aa-84971c658db7_wxs_gdc_realn.bam 32971728513 BAM harmonized CPTAC3 9b9d6e4e-7609-4a76-bd56-2dba820b91d5 5bc2f670e4be81f8fdc5c3533fc03538 {"aliquot_tag": "DUP_76b0f18e", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_9fd354bb.WXS.T C3L-03348 PDA WXS tumor CPT0167050035 CPT0167050035.WholeExome.RP-1303.bam 38199389522 BAM submitted_aligned CPTAC3 a3063468-775a-4305-b9b2-7f32355d351d 39e019269fe43b06d4ee37fa19223ccd {"aliquot_tag": "DUP_9fd354bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_9fd354bb.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050035 fc5be7e1-d584-45b2-bfad-1cfd971ca4ec_wxs_gdc_realn.bam 52677237299 BAM harmonized CPTAC3 a5a5ff62-5ea9-404c-a530-7e15987c1b52 a1aa493fef2f9bb725c65ddca6c699d6 {"aliquot_tag": "DUP_9fd354bb", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_a0f836f3.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.chimeric.gdc_realn.bam 271117993 BAM chimeric harmonized CPTAC3 7ae20b2f-47bf-47f7-9c7e-31b3cdab0c5f 0a5d7745993a76a743c8f3881173dc94 {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_a0f836f3.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.genomic.gdc_realn.bam 6502771481 BAM genomic harmonized CPTAC3 34daf20b-480f-4f17-bc58-b79bdee6d469 13f771d101a2c46058b4ccae488aef4a {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_a0f836f3.RNA-Seq.S27_L008_R1.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R1_001.fastq.gz 2992954750 FASTQ S27_L008_R1 submitted_unaligned CPTAC3 fbaddd20-86dc-4864-9ba7-d0b93036a1d4 19cfcf6a992b1508362b8b8807a908c8 {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_a0f836f3.RNA-Seq.S27_L008_R2.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R2_001.fastq.gz 3352630699 FASTQ S27_L008_R2 submitted_unaligned CPTAC3 66ed3b74-efd6-42d6-a8aa-f5d62759b401 5100684c30b121dd2b849d7f139a575c {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S27", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_a0f836f3.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.transcriptome.gdc_realn.bam 8151666680 BAM transcriptome harmonized CPTAC3 b9089b07-9681-4d4c-8a3f-a12482936c05 76d24eff6e6dc4b1010c2225b67eb2ee {"aliquot_tag": "DUP_a0f836f3", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_e8d4642d.WXS.T C3L-03348 PDA WXS tumor CPT0167050034 CPT0167050034.WholeExome.RP-1303.bam 22428025682 BAM submitted_aligned CPTAC3 995d7f4a-5260-4a37-9210-8b3a0357fc9a c697b24c93cbebdcf73f3b7b7a34350a {"aliquot_tag": "DUP_e8d4642d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03348.DUP_e8d4642d.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050034 0a27616d-0796-4609-ad59-2448a75d7749_wxs_gdc_realn.bam 31087045292 BAM harmonized CPTAC3 e5bd8d9b-8c06-4f9a-a17c-5659a79c6d5f 2c76f026d8a65618bb13caa0ea7b3ecb {"aliquot_tag": "DUP_e8d4642d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03350.MethArray.Green.T C3L-03350 PDA Methylation_Array tumor CPT0198310008 203561450030_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a85a8a13-e047-4e86-94c8-3f070d40971b beac862c52e72f57a01d02dc3b9004ff {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.MethArray.Red.T C3L-03350 PDA Methylation_Array tumor CPT0198310008 203561450030_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 94a4729b-2548-408c-acfd-e21b6676634f 092da6eaa4d523f244241b553a76d214 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.miRNA-Seq.S39_L005_R1.T C3L-03350 PDA miRNA-Seq tumor CPT0198310011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCGTCC_S39_L005_R1_001.unaln.bam 244660424 BAM S39_L005_R1 submitted_unaligned CPTAC3 d9497292-ce88-4a2c-ba01-cb532316352c e8c04c64348f5721b579ce52a468d901 {"aliquot_tag": "ALQ_f6f4440b", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.miRNA-Seq.T.hg38 C3L-03350 PDA miRNA-Seq tumor CPT0198310011 fc78ccbd-64ea-448f-9389-7e4fe7ef4b6b_mirnaseq_gdc_realn.bam 281234811 BAM harmonized CPTAC3 fad10a93-c712-44fa-8e7d-475ab01ee09d 90a2eddbe50b5ba6d70bb063141264db {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.RNA-Seq.chimeric.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.chimeric.gdc_realn.bam 35252484 BAM chimeric harmonized CPTAC3 37a91e76-bd49-4e63-b0c0-dcfccf5b28f7 bb987273262b46e5dc9f5f981f8d63ee {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.RNA-Seq.genomic.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.genomic.gdc_realn.bam 8279102681 BAM genomic harmonized CPTAC3 6215728e-8b41-4cf0-ae80-9bf84b064202 915feb6dff88b0d13b087ec010d6db63 {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.RNA-Seq.S19_L005_R1.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R1_001.fastq.gz 3882319565 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 3a223270-44f3-44c0-aef3-1cd3b7d84f4a 6bcde7b5e4a4b9af21856a85c06c742f {"aliquot_tag": "ALQ_f6f4440b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.RNA-Seq.S19_L005_R2.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R2_001.fastq.gz 4167422484 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 e6e786ba-07df-4f1d-afe3-a24537a37c89 54343d6e47c6c6c0daab87da9f020355 {"aliquot_tag": "ALQ_f6f4440b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.RNA-Seq.transcriptome.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.transcriptome.gdc_realn.bam 11300823154 BAM transcriptome harmonized CPTAC3 dae9b03d-e405-4a32-a764-dc205f946580 586728c4b22249417a2a0b7541df3517 {"aliquot_tag": "ALQ_f6f4440b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.Targeted.T C3L-03350 PDA Targeted_Sequencing tumor CPT0198310008 CPT0198310008.CustomSelection.RP-1303.PDO-18786.bam 4431220616 BAM submitted_aligned CPTAC3 b42c6b7f-1d74-404e-942d-0e4965e6c37b dba41d9f5ac240be6a1a036c67904416 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.Targeted.T.hg38 C3L-03350 PDA Targeted_Sequencing tumor CPT0198310008 8441a514-b64c-438e-8146-28af1c73ee54_targetedsequencing_gdc_realn.bam 6163044828 BAM harmonized CPTAC3 2db0d00d-6a5a-402c-89d3-3b0995b26747 18d656df8f049a92c4adbc9ad65a1eec {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.WGS.N C3L-03350 PDA WGS blood_normal CPT0198350002 CPT0198350002.WholeGenome.RP-1303.bam 67492712507 BAM submitted_aligned CPTAC3 4d22e85c-cf4a-410a-b570-8cafab308714 c0a95560ae1e10fa469a2ba35923e335 {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03350.WGS.N.hg38 C3L-03350 PDA WGS blood_normal CPT0198350002 76d3caa1-56dc-481e-9d3e-e2a8c353c855_wgs_gdc_realn.bam 99427085983 BAM harmonized CPTAC3 3aff18dc-c927-4f39-a5f2-e43fbc2a92e8 980c47d4fabec29389a99a1dcab42ace {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03350.WGS.T C3L-03350 PDA WGS tumor CPT0198310008 CPT0198310008.WholeGenome.RP-1303.bam 69396914313 BAM submitted_aligned CPTAC3 4b1a6024-c740-411f-8614-faae88fc71ec 02b4cebffd5369424f1a49682507ce9a {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.WGS.T.hg38 C3L-03350 PDA WGS tumor CPT0198310008 8441a514-b64c-438e-8146-28af1c73ee54_wgs_gdc_realn.bam 100091921537 BAM harmonized CPTAC3 3ba0ce7c-be58-4b50-a682-a89f95bc13b0 a294b1dfe5dcb70fadd7479d1ea85ae0 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.WXS.N C3L-03350 PDA WXS blood_normal CPT0198350002 CPT0198350002.WholeExome.RP-1303.bam 28383794554 BAM submitted_aligned CPTAC3 8f607e56-b056-4b56-ab64-73522b5d7a1f 72873d529912da538008ce3504d825cd {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03350.WXS.N.hg38 C3L-03350 PDA WXS blood_normal CPT0198350002 76d3caa1-56dc-481e-9d3e-e2a8c353c855_wxs_gdc_realn.bam 39267006450 BAM harmonized CPTAC3 38d08b68-04e5-4802-b62c-a26145674d96 7a8d67dc5f943d415c099be37ed95bad {"aliquot_tag": "ALQ_83668230", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03350.WXS.T C3L-03350 PDA WXS tumor CPT0198310008 CPT0198310008.WholeExome.RP-1303.bam 49094698803 BAM submitted_aligned CPTAC3 db23e593-37dd-493f-9a0f-bbfe7f7ea7dd 2fc1aeacaff3371845bd8552e9b359d4 {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03350.WXS.T.hg38 C3L-03350 PDA WXS tumor CPT0198310008 8441a514-b64c-438e-8146-28af1c73ee54_wxs_gdc_realn.bam 68278406501 BAM harmonized CPTAC3 311baec2-6f46-4bca-b63b-f8f1a3863c25 c8fa66047627d64d34fcd0ddba22e41f {"aliquot_tag": "ALQ_9633cdee", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03356.MethArray.Green.T C3L-03356 PDA Methylation_Array tumor CPT0198420007 203561620012_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 1d564805-865f-4612-8382-55adcbab274a 2596dda0a925c54453c0d8c94b32f661 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.MethArray.Red.T C3L-03356 PDA Methylation_Array tumor CPT0198420007 203561620012_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 e3860c22-14b1-4407-92b3-379ed46c4420 bb0fd9136460ff4e5ff8e4ac297b56e3 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.miRNA-Seq.S10_L006_R1.T C3L-03356 PDA miRNA-Seq tumor CPT0198420010 190712_UNC32-K00270_0192_BH7HL3BBXY_CATGGC_S10_L006_R1_001.unaln.bam 227806433 BAM S10_L006_R1 submitted_unaligned CPTAC3 217fe8a7-3227-4ac7-83c4-62c5f36f5b7d 9d01efb7730ef62eb462fd4241d22f04 {"aliquot_tag": "ALQ_db563ef5", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.miRNA-Seq.T.hg38 C3L-03356 PDA miRNA-Seq tumor CPT0198420010 846740a0-48f8-4822-bcdc-2b62f28664d2_mirnaseq_gdc_realn.bam 258004433 BAM harmonized CPTAC3 755a44a2-1732-41f8-abd3-89159bf4a3c7 ba38a2f584b9df0c4711b9da0a96b4fa {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.RNA-Seq.chimeric.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.chimeric.gdc_realn.bam 35953010 BAM chimeric harmonized CPTAC3 0dc9f069-c393-496c-9db6-2b3567ac48cf e1d08f2aab93c39fc0149c049786ac93 {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.RNA-Seq.genomic.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.genomic.gdc_realn.bam 9816391837 BAM genomic harmonized CPTAC3 522d9365-bc84-43d8-9f69-bb1d2da1a6a6 0662928ff167a4485716ee4bee21cd7b {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.RNA-Seq.S17_L005_R1.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R1_001.fastq.gz 3882088996 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 61fa646e-a7db-4be2-ab3b-b05b21b48ff5 2de02dd11aa199084bf988d716ba5b1c {"aliquot_tag": "ALQ_db563ef5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.RNA-Seq.S17_L005_R2.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R2_001.fastq.gz 4322512693 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 17eeac41-1327-4e26-92fb-5cb9cdb96767 497ce561237c59eaf36116d37b5a55f3 {"aliquot_tag": "ALQ_db563ef5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.RNA-Seq.transcriptome.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.transcriptome.gdc_realn.bam 10203055148 BAM transcriptome harmonized CPTAC3 ecbdf753-7924-4234-b871-6d43d5f401cf ce1b1803346192f5ff26d321390fe74b {"aliquot_tag": "ALQ_db563ef5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.Targeted.T C3L-03356 PDA Targeted_Sequencing tumor CPT0198420007 CPT0198420007.CustomSelection.RP-1303.PDO-18786.bam 4929898503 BAM submitted_aligned CPTAC3 283e4bbf-dec3-4a93-bb4a-e4da0f4efef6 a114c0904e997ef13dcdc7535e663d5d {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.Targeted.T.hg38 C3L-03356 PDA Targeted_Sequencing tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_targetedsequencing_gdc_realn.bam 6819961395 BAM harmonized CPTAC3 25e0612e-1358-47fe-8c64-08dbf12b181c 30baca96cac77780850a7aabe56a1262 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.WGS.N C3L-03356 PDA WGS blood_normal CPT0198450002 CPT0198450002.WholeGenome.RP-1303.bam 91211340238 BAM submitted_aligned CPTAC3 9a59fb24-bddf-4700-8fb1-48b3aee686e2 2a1cb96d18571d35c19ca12fac7ae117 {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03356.WGS.N.hg38 C3L-03356 PDA WGS blood_normal CPT0198450002 78376e37-140d-4c03-a35f-64b8ec950598_wgs_gdc_realn.bam 131693963521 BAM harmonized CPTAC3 4197a5e2-b184-43c5-a01d-01f22cf89d7c 4f35b2f2913a3f4e4122a19417c78712 {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03356.WGS.T C3L-03356 PDA WGS tumor CPT0198420007 CPT0198420007.WholeGenome.RP-1303.bam 74897861080 BAM submitted_aligned CPTAC3 31c77bb2-e61b-48de-97a7-daed3ee1b077 0b3c19d047777df4db93d3e512b81a26 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.WGS.T.hg38 C3L-03356 PDA WGS tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_wgs_gdc_realn.bam 108796153572 BAM harmonized CPTAC3 2e61e2f8-19c0-46b4-b4d0-226140c1589c 140f6cacaebebe69ca383da3f6c88443 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.WXS.N C3L-03356 PDA WXS blood_normal CPT0198450002 CPT0198450002.WholeExome.RP-1303.bam 20676925668 BAM submitted_aligned CPTAC3 76c499d6-ce07-45d7-848e-dbb5a525c038 29f1a410b5802a8e5c5f8602a85abf6a {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03356.WXS.N.hg38 C3L-03356 PDA WXS blood_normal CPT0198450002 78376e37-140d-4c03-a35f-64b8ec950598_wxs_gdc_realn.bam 28372322137 BAM harmonized CPTAC3 bf6fe2a5-f454-42ea-93d0-d11496684867 075810bb6a5b34b093708b0b45362126 {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03356.WXS.T C3L-03356 PDA WXS tumor CPT0198420007 CPT0198420007.WholeExome.RP-1303.bam 55677693404 BAM submitted_aligned CPTAC3 6a9c3d44-a585-46df-a16a-7e5908ac5866 47054d87506eeb8f143645e8946879c6 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03356.WXS.T.hg38 C3L-03356 PDA WXS tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_wxs_gdc_realn.bam 77207880644 BAM harmonized CPTAC3 a0bb9942-5291-4181-a01d-2cdd31ee6c8b 2bcd08ba2a12dd5eec3cfc317c2b74b1 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03371.MethArray.Green.A C3L-03371 PDA Methylation_Array tissue_normal CPT0275880006 203561620086_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 7a042bdb-d1bf-41ab-8fca-ed336cbb2974 e08e698690f1c4451d4ed22d7dc078db {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03371.MethArray.Green.T C3L-03371 PDA Methylation_Array tumor CPT0275870006 203561450018_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e14cb9cd-570c-4145-ae3f-02f9f0981332 842cda824b92d0f0a7fdce2b92794083 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.MethArray.Red.A C3L-03371 PDA Methylation_Array tissue_normal CPT0275880006 203561620086_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 e4bb1a5d-7db1-4b58-96fa-6bc7ca72575a 0b5139a6bee5557fa7be9e062bbc4d43 {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03371.MethArray.Red.T C3L-03371 PDA Methylation_Array tumor CPT0275870006 203561450018_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 23424878-3656-4d50-8361-b6f88e81942b e452be7b0af4b5c7745de6b5c2d06219 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.miRNA-Seq.S22_L004_R1.T C3L-03371 PDA miRNA-Seq tumor CPT0275870009 190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L004_R1_001.unaln.bam 156803811 BAM S22_L004_R1 submitted_unaligned CPTAC3 0e11e966-7771-4ce3-8a9c-80bc3b19c239 7865436f5d1ac7d33a457311ea51e864 {"aliquot_tag": "ALQ_4963b72c", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.miRNA-Seq.T.hg38 C3L-03371 PDA miRNA-Seq tumor CPT0275870009 dfd78d92-4529-431f-a8a4-7b0c090372ae_mirnaseq_gdc_realn.bam 179976957 BAM harmonized CPTAC3 1bf25f0d-7fb8-4e04-8fb6-4c0b7efbdaef 466308e3521fcf84c3aaa8d04065a228 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.RNA-Seq.chimeric.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.chimeric.gdc_realn.bam 31603216 BAM chimeric harmonized CPTAC3 dcb3dbec-2fd3-48bf-bcd7-fa344845a9a4 d29f4861ae2e36d09eee8798dc3d5066 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.RNA-Seq.genomic.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.genomic.gdc_realn.bam 10245837803 BAM genomic harmonized CPTAC3 ac471a62-3235-4e66-a93a-4ba3994d24ab 96a143859c28878c892adaf411079676 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.RNA-Seq.S1_L001_R1.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4782218516 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 1634a736-f999-4d14-a5b9-941444523601 797adfb3b06fe28d583a79dce45737d4 {"aliquot_tag": "ALQ_4963b72c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.RNA-Seq.S1_L001_R2.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4852328372 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 bc8d50f6-1a81-48ff-ab5b-d72e57adc1f1 21399213865e4c07ad112069768f7d0d {"aliquot_tag": "ALQ_4963b72c", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.RNA-Seq.transcriptome.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.transcriptome.gdc_realn.bam 12867195399 BAM transcriptome harmonized CPTAC3 50970b7a-945e-4e82-9908-e0114058742e 6585c53408053fbe97b856625ed3b583 {"aliquot_tag": "ALQ_4963b72c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.Targeted.T C3L-03371 PDA Targeted_Sequencing tumor CPT0275870006 CPT0275870006.CustomSelection.RP-1303.PDO-18786.bam 4963174450 BAM submitted_aligned CPTAC3 2fc35e3d-48ee-4577-9271-160008a0ddea 253eb8b670180c0c1d8d292886143af4 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.Targeted.T.hg38 C3L-03371 PDA Targeted_Sequencing tumor CPT0275870006 b64d6b49-8c91-43e1-b52a-e7d2e32de154_targetedsequencing_gdc_realn.bam 6849606441 BAM harmonized CPTAC3 531f0389-de5e-43f5-b0f3-204418ca8aab a3bf76253e6a682f14aa873858ff8d89 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.WGS.N C3L-03371 PDA WGS blood_normal CPT0265930002 CPT0265930002.WholeGenome.RP-1303.bam 70737566167 BAM submitted_aligned CPTAC3 bf797d5a-dcaa-4f65-9982-21de3dbee21b 001fe70ed85a1f5e7e1b25d44f219fd7 {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03371.WGS.N.hg38 C3L-03371 PDA WGS blood_normal CPT0265930002 68092066-8b82-4104-9a20-01103abbd08a_wgs_gdc_realn.bam 102254369105 BAM harmonized CPTAC3 22a83bb6-f6e0-4361-9611-85cbaee303fc 59477f10a6cdba654bd95861f30807fc {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03371.WGS.T C3L-03371 PDA WGS tumor CPT0275870006 CPT0275870006.WholeGenome.RP-1303.bam 81844901089 BAM submitted_aligned CPTAC3 4118b328-0458-47c0-86ea-c2789d76f1af 4992d3c4708445f9e92ab7e9e02547cd {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.WGS.T.hg38 C3L-03371 PDA WGS tumor CPT0275870006 b64d6b49-8c91-43e1-b52a-e7d2e32de154_wgs_gdc_realn.bam 118504876173 BAM harmonized CPTAC3 9603db94-919d-440d-8ffb-6282a3504957 c0fd7216bed4a8166d0b037a527c9cf4 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.WXS.A C3L-03371 PDA WXS tissue_normal CPT0275880006 CPT0275880006.WholeExome.RP-1303.bam 23591291666 BAM submitted_aligned CPTAC3 7f278d35-a97e-4997-8b3a-7b490723b81d e101c14adff000b13075bf5fa8fab953 {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03371.WXS.A.hg38 C3L-03371 PDA WXS tissue_normal CPT0275880006 91cf837b-b73b-4153-9bc6-69ee9877d246_wxs_gdc_realn.bam 31957128517 BAM harmonized CPTAC3 86c9a7a0-9608-46e8-8961-24e1d333451a fadd78fafa2bae48a608de875aa4034b {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03371.WXS.N C3L-03371 PDA WXS blood_normal CPT0265930002 CPT0265930002.WholeExome.RP-1303.bam 25382175515 BAM submitted_aligned CPTAC3 c3321f0e-0310-4381-b6fd-edb8ca0af05a 1852ab90ca3bbc7b32734f4280d93286 {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03371.WXS.N.hg38 C3L-03371 PDA WXS blood_normal CPT0265930002 68092066-8b82-4104-9a20-01103abbd08a_wxs_gdc_realn.bam 34800455975 BAM harmonized CPTAC3 811aeff5-1757-4b26-9ce3-55361cd92d7c a0917d56b8d338380563589b9d306305 {"aliquot_tag": "ALQ_2cc71b5f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03371.WXS.T C3L-03371 PDA WXS tumor CPT0275870006 CPT0275870006.WholeExome.RP-1303.bam 64268613061 BAM submitted_aligned CPTAC3 19ff0cac-9774-44d8-b169-bf7ca85ad0b6 efc4fe2d709890f795fd2596f3b9d268 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03371.WXS.T.hg38 C3L-03371 PDA WXS tumor CPT0275870006 b64d6b49-8c91-43e1-b52a-e7d2e32de154_wxs_gdc_realn.bam 89603044939 BAM harmonized CPTAC3 68bbd142-3ff9-4d21-9ef9-cbe7e2a3128e 1b2368a087f39ee9eaef338456c7101a {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.MethArray.Green.T C3L-03372 GBM Methylation_Array tumor CPT0275960006 204367490151_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 e714040a-6402-4235-8292-63a0077c85c2 a8c7973335fcf6bff8a1c4932d58af0e {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.MethArray.Red.T C3L-03372 GBM Methylation_Array tumor CPT0275960006 204367490151_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 17e7d89a-fd06-4bbb-a052-1c0b3e40daa6 23f82e1c55875aef2fbb1391b678d076 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.miRNA-Seq.S39_L002_R1.T C3L-03372 GBM miRNA-Seq tumor CPT0275960009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 252595654 BAM S39_L002_R1 submitted_unaligned CPTAC3 3791b8ee-e0dc-4638-bb42-2f3763171e50 faaa0479a28cd0a70b8f588d2565196e {"aliquot_tag": "ALQ_bf5f4d39", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.miRNA-Seq.T.hg38 C3L-03372 GBM miRNA-Seq tumor CPT0275960009 dc89a039-334e-4161-bf3c-fb08ce3dd668_mirnaseq_gdc_realn.bam 282560822 BAM harmonized CPTAC3 e97614e1-f3b1-4cdd-a1b0-a63d474ba783 45f7d02d9b7e385c8bb305bc972d44a7 {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.RNA-Seq.chimeric.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.chimeric.gdc_realn.bam 410409829 BAM chimeric harmonized CPTAC3 a8ea80f4-824b-4855-98c5-0a406183e098 b441e8850f8b00abed1dfabd0be8b46c {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.RNA-Seq.genomic.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.genomic.gdc_realn.bam 7859272855 BAM genomic harmonized CPTAC3 e407f1d2-fd4c-4858-8b16-f5f3c716e2f9 88e5f15b887b8dd9e7cbf33d90e4acd6 {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.RNA-Seq.S7_L002_R1.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R1_001.fastq.gz 3400877684 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 8109363c-1835-4a99-92e2-e83b25a6b90f 94383d7fc37e6af11f3fb4ac899ce35d {"aliquot_tag": "ALQ_bf5f4d39", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.RNA-Seq.S7_L002_R2.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 650b80e4-de52-493d-98b9-8ba98fbf901b 5b6ef1a8229a5a1fcb8ca0eff1ec47c0 {"aliquot_tag": "ALQ_bf5f4d39", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.RNA-Seq.transcriptome.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.transcriptome.gdc_realn.bam 6919499908 BAM transcriptome harmonized CPTAC3 63570d1d-15f0-4468-af26-b69122d353ac e48fa1933d6c8e07f131f6666674c50f {"aliquot_tag": "ALQ_bf5f4d39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.WGS.N C3L-03372 GBM WGS blood_normal CPT0265940002 CPT0265940002.WholeGenome.RP-2158.bam 30822237663 BAM submitted_aligned CPTAC3 31a89f6d-8060-4ffa-b67c-ee7de92e385b 1fdd13b9a447363b79781da3cf237559 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03372.WGS.N.hg38 C3L-03372 GBM WGS blood_normal CPT0265940002 69294b54-61df-4d78-a0da-7e5f1420368c_wgs_gdc_realn.bam 90435302917 BAM harmonized CPTAC3 e93293ef-83a7-4e72-8e5d-632a9ae6fb51 b9de531a0dc0c01ebe82d3e294c10f60 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03372.WGS.T C3L-03372 GBM WGS tumor CPT0275960006 CPT0275960006.WholeGenome.RP-2158.bam 21511353026 BAM submitted_aligned CPTAC3 3768276d-ccd5-42ab-a4ed-ef40990aa5b0 bcef20db68bb6f428a67c53357ef354f {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.WGS.T.hg38 C3L-03372 GBM WGS tumor CPT0275960006 0f606cd0-59c7-4da4-be52-58226d2b3cd5_wgs_gdc_realn.bam 62585754770 BAM harmonized CPTAC3 4fe1828b-c264-4376-b62e-0625433cb229 78f0ad18479f315900a7904c4f0c5479 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.WXS.N C3L-03372 GBM WXS blood_normal CPT0265940002 CPT0265940002.WholeExome.RP-1303.bam 21429808831 BAM submitted_aligned CPTAC3 5a23c514-da2a-4366-bd23-dd31907fbc9f 7b1771feaaa492922b1b87362df611f6 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03372.WXS.N.hg38 C3L-03372 GBM WXS blood_normal CPT0265940002 69294b54-61df-4d78-a0da-7e5f1420368c_wxs_gdc_realn.bam 29617153769 BAM harmonized CPTAC3 232df735-b856-4f31-840a-0e28d746748a 136569dab8570fd707f335939ea98076 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03372.WXS.T C3L-03372 GBM WXS tumor CPT0275960006 CPT0275960006.WholeExome.RP-1303.bam 20594156903 BAM submitted_aligned CPTAC3 7ffb97bc-1694-49bb-aa91-9bdccd83d539 199d2579fa9baadd047e8b72a7488b61 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03372.WXS.T.hg38 C3L-03372 GBM WXS tumor CPT0275960006 0f606cd0-59c7-4da4-be52-58226d2b3cd5_wxs_gdc_realn.bam 29792319485 BAM harmonized CPTAC3 0dd34017-3bea-4078-bfb6-359d08615f12 198bfc39e983233ae7667b9264d80326 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03378.MethArray.Green.A C3L-03378 HNSCC Methylation_Array tissue_normal CPT0199890006 203219650047_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8c8121bd-3054-4f6e-96b2-308969eef29b c9e7e8a6d51f28c36f824b900ac9f415 {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.MethArray.Green.T C3L-03378 HNSCC Methylation_Array tumor CPT0199880006 203271740119_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e0486f30-6012-4751-ae3d-87e7c4be7cb7 e9486658a8113b21cd271b32665c008f {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.MethArray.Red.A C3L-03378 HNSCC Methylation_Array tissue_normal CPT0199890006 203219650047_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 d7dd3702-b506-4b4f-9822-aeb1d9fed0b8 2364a3ab8d1ea1d9bf008cf8165ab45c {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.MethArray.Red.T C3L-03378 HNSCC Methylation_Array tumor CPT0199880006 203271740119_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 c572d87d-686c-43fb-bf16-2f5ecc295b9b c7432e15892d100ef0176fae2603f411 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.miRNA-Seq.A.hg38 C3L-03378 HNSCC miRNA-Seq tissue_normal CPT0199890009 81649f37-c710-4f6a-9249-025429acb7ba_mirnaseq_gdc_realn.bam 305229832 BAM harmonized CPTAC3 bb8f64f2-2b37-4c4b-96c7-745f06f4e7bd 90497d0439914145717a193607be7f3c {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.miRNA-Seq.S15_L003_R1.A C3L-03378 HNSCC miRNA-Seq tissue_normal CPT0199890009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGTCA_S15_L003_R1_001.unaln.bam 263997157 BAM S15_L003_R1 submitted_unaligned CPTAC3 0fcba505-c6cd-4e44-a01e-05da3d983a8b 87f85d8b27896ec0204f467d11c5155a {"aliquot_tag": "ALQ_1df44dce", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.miRNA-Seq.S6_L003_R1.T C3L-03378 HNSCC miRNA-Seq tumor CPT0199880009 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L003_R1_001.unaln.bam 256072638 BAM S6_L003_R1 submitted_unaligned CPTAC3 c0d3ad5e-497b-4026-9ef7-414f21fdee54 981f6ae8be14f8e9e1a6304b53ce2a89 {"aliquot_tag": "ALQ_2094647e", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.miRNA-Seq.T.hg38 C3L-03378 HNSCC miRNA-Seq tumor CPT0199880009 dcac4fc8-3962-4e14-b7fe-e25626b06dde_mirnaseq_gdc_realn.bam 289395161 BAM harmonized CPTAC3 eadbf333-f492-41dc-a929-fd8b3eb6c8e4 e8a83ca6e7bc5209954e886e775e271d {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.chimeric.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.chimeric.gdc_realn.bam 137926568 BAM chimeric harmonized CPTAC3 82abc197-7bb1-4c4e-92aa-aea484364be6 0f8123414e340ce02a711073406c1258 {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.RNA-Seq.chimeric.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.chimeric.gdc_realn.bam 264090627 BAM chimeric harmonized CPTAC3 3a601666-7ddf-46de-85c0-babe6034e0e6 73ceb246293386f6258a30f37885ef45 {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.chimeric.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.chimeric.gdc_realn.bam 238085521 BAM chimeric harmonized CPTAC3 ca0c6734-4a7d-4cfb-9fed-636724739890 6f662d299f58c3454862dc23eb2b54b3 {"aliquot_tag": "ALQ_cc784569", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.genomic.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.genomic.gdc_realn.bam 7521311927 BAM genomic harmonized CPTAC3 f5a05ceb-2d3f-4615-bee9-9a813a169d05 1f9291d304bcf8baa0cfe0c37be8bcb4 {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.RNA-Seq.genomic.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.genomic.gdc_realn.bam 10030347473 BAM genomic harmonized CPTAC3 1f4977ec-64f0-4a98-bcdb-052aa3657417 bb022fb2aa6f7125afa25acddc8628ce {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.genomic.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.genomic.gdc_realn.bam 11790346560 BAM genomic harmonized CPTAC3 c3e37fa1-981c-4420-8c97-6ae28634aafd a04357c2205b40f6d19c1eed4821ee3b {"aliquot_tag": "ALQ_cc784569", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.S1_L007_R1.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 3654791322 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 77b18098-8d38-4e5e-8131-07fb0109099f 7db9f6241c05f26b88dffa23658a8826 {"aliquot_tag": "ALQ_1df44dce", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.RNA-Seq.S1_L007_R2.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 4035185144 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 e4dd11db-f583-4498-ba79-381e045765a7 403a6cf11fb668cc757feb0aa4a07ebd {"aliquot_tag": "ALQ_1df44dce", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.RNA-Seq.S4_L001_R1.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R1_001.fastq.gz 4777250256 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 5290e03c-be2a-45ea-80b4-776a5ce1ce2f c49de7e8b17397e03cc32f53bc029192 {"aliquot_tag": "ALQ_2094647e", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.S4_L001_R2.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R2_001.fastq.gz 5384513755 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 61f672cd-e63d-4e8d-b501-ea42b0e04989 ffebd97ff87693df09f0e9a2ef22c6a0 {"aliquot_tag": "ALQ_2094647e", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.S85_R1.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R1_001.fastq.gz 6737442394 FASTQ S85_R1 submitted_unaligned CPTAC3 2e149408-a843-40d0-9aa8-9ecd461a1e30 22f7b1b0e497de65af6a1f1ccf2193f6 {"aliquot_tag": "ALQ_cc784569", "sample": "S85", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.S85_R2.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R2_001.fastq.gz 7000302972 FASTQ S85_R2 submitted_unaligned CPTAC3 c1d95347-4092-459b-bfc0-9f8b132fec1e d07f0f98e79f46c1a63b156e5f53cdab {"aliquot_tag": "ALQ_cc784569", "sample": "S85", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.transcriptome.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.transcriptome.gdc_realn.bam 11724699595 BAM transcriptome harmonized CPTAC3 85211d41-0e5a-46dd-a4c0-b44271418bcd 7e905dd662334b2cfcaa080931eb7ea9 {"aliquot_tag": "ALQ_1df44dce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.RNA-Seq.transcriptome.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.transcriptome.gdc_realn.bam 13006093053 BAM transcriptome harmonized CPTAC3 37eab4ae-5228-46e9-9ead-e0efa98ebbcb 346dc16538d8ae77fd4c4d904243f46e {"aliquot_tag": "ALQ_2094647e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.RNA-Seq.transcriptome.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.transcriptome.gdc_realn.bam 8788647195 BAM transcriptome harmonized CPTAC3 a575149f-e180-452e-ab22-e548478cc8b0 3afb16e1dcfefafacd5ea769d6038203 {"aliquot_tag": "ALQ_cc784569", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.WGS.N C3L-03378 HNSCC WGS blood_normal CPT0200430002 CPT0200430002.WholeGenome.RP-1303.bam 69597804536 BAM submitted_aligned CPTAC3 11a4e2e2-2300-4aa2-9ee2-57c6472b0c55 b5083a6966041934931a199c81a1cb2b {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03378.WGS.N.hg38 C3L-03378 HNSCC WGS blood_normal CPT0200430002 d4fd14ea-995a-4030-b224-544874742c47_wgs_gdc_realn.bam 109146266405 BAM harmonized CPTAC3 ede9f162-9a03-4918-bb53-d4907388860e 9f755b8a4ff892418741219f88aa3a15 {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03378.WGS.T C3L-03378 HNSCC WGS tumor CPT0199880006 CPT0199880006.WholeGenome.RP-1303.bam 69161062180 BAM submitted_aligned CPTAC3 2cd02f43-4783-4990-9e48-6c7777730304 e2e0142cddadb670cabf290f76c4f283 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.WGS.T.hg38 C3L-03378 HNSCC WGS tumor CPT0199880006 3a309e18-6adc-4200-9961-4f696fcb2984_wgs_gdc_realn.bam 99464172070 BAM harmonized CPTAC3 aecf5b35-4feb-4a29-864d-2eaa7dcf8ca1 412083f8f0cdf6ba5b933e4a644e16cc {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.WXS.A C3L-03378 HNSCC WXS tissue_normal CPT0199890006 CPT0199890006.WholeExome.RP-1303.bam 26499410557 BAM submitted_aligned CPTAC3 f6d37872-70af-42c5-b89f-3651cb33df82 ee4eb6da6b84eb1835ba21c266b9c277 {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.WXS.A.hg38 C3L-03378 HNSCC WXS tissue_normal CPT0199890006 a7bfa0e7-f947-43f8-8f56-58be472c0576_wxs_gdc_realn.bam 36302155959 BAM harmonized CPTAC3 0464cc27-5734-45ea-9a72-139dcacc1222 e176630b7390f141959fd967022f25ca {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03378.WXS.N C3L-03378 HNSCC WXS blood_normal CPT0200430002 CPT0200430002.WholeExome.RP-1303.bam 25155190555 BAM submitted_aligned CPTAC3 7f3bc2b1-8ae7-47c2-a48f-529e299ed5a0 ab73e1d1dd7343143060994eeb2c1602 {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03378.WXS.N.hg38 C3L-03378 HNSCC WXS blood_normal CPT0200430002 d4fd14ea-995a-4030-b224-544874742c47_wxs_gdc_realn.bam 34848697712 BAM harmonized CPTAC3 8a903c70-64d6-4282-8503-3be43feb7c26 55c17e0a5fe1dfe793d4a8ea93160f18 {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03378.WXS.T C3L-03378 HNSCC WXS tumor CPT0199880006 CPT0199880006.WholeExome.RP-1303.bam 23450041321 BAM submitted_aligned CPTAC3 4f0f5d96-1633-433d-ab31-acf10464c942 e7f1527f1f19d25c67c502c78fa9fe37 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03378.WXS.T.hg38 C3L-03378 HNSCC WXS tumor CPT0199880006 3a309e18-6adc-4200-9961-4f696fcb2984_wxs_gdc_realn.bam 32364936005 BAM harmonized CPTAC3 344731e5-c562-4645-a65c-c1fa7eefed6d 80a1c29338b3b5d2bc8ac611c76ffc86 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03385.MethArray.Green.T C3L-03385 GBM Methylation_Array tumor CPT0239860006 204367490084_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 c5ef413a-9205-4a5a-a7ab-f2f44ee7ee5c 7e6e7f457338632f64f6d1101fcaa1c7 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.MethArray.Red.T C3L-03385 GBM Methylation_Array tumor CPT0239860006 204367490084_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 7bd922bd-4827-46be-b430-59a771ae6168 4e52ca91348a55ff6c64cb81678c1f60 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.miRNA-Seq.S7_L001_R1.T C3L-03385 GBM miRNA-Seq tumor CPT0239860013 200526_UNC32-K00270_0248_BHH7WFBBXY_CGATGT_S7_L001_R1_001.unaln.bam 380895617 BAM S7_L001_R1 submitted_unaligned CPTAC3 79b8f443-cb3f-491e-92ee-0fa93d0fe1cd fa84b0b0bce05fa4a47530b31493c085 {"aliquot_tag": "ALQ_ce27224d", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.miRNA-Seq.T.hg38 C3L-03385 GBM miRNA-Seq tumor CPT0239860013 e6fad453-db9d-466c-b35a-d4b2051bf395_mirnaseq_gdc_realn.bam 415432118 BAM harmonized CPTAC3 b4276839-8fa0-4b36-91ec-123ccf100dab 0c5454ac7c834028f0bb9dcf4ce0e5c3 {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.RNA-Seq.chimeric.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.chimeric.gdc_realn.bam 23618802 BAM chimeric harmonized CPTAC3 3a9d3af7-7aa2-4573-b8b2-b280d87fc18f 673e0f6c5216d4ece0fe9f6f12da3f6c {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.RNA-Seq.genomic.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.genomic.gdc_realn.bam 7673245866 BAM genomic harmonized CPTAC3 a9ed5897-bb28-40c8-9e57-bd1b8ad05f8f 916dd2d023f06d99a6e9494b983bf3ea {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.RNA-Seq.S17_L005_R1.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 a5292248c7498c1bfbd864f3b0e567d4 {"aliquot_tag": "ALQ_ce27224d", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.RNA-Seq.S17_L005_R2.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 bad51e82-edda-4dae-9ae2-a378a2c50866 cc1f4db229f124174205692fef638689 {"aliquot_tag": "ALQ_ce27224d", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.RNA-Seq.transcriptome.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.transcriptome.gdc_realn.bam 9931519995 BAM transcriptome harmonized CPTAC3 683e2963-a2c2-4872-b1b6-40c5f46f060b 4c340b0f4c129230cb02e5affbebbb6d {"aliquot_tag": "ALQ_ce27224d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.WGS.N C3L-03385 GBM WGS blood_normal CPT0240540002 CPT0240540002.WholeGenome.RP-2158.bam 24847212386 BAM submitted_aligned CPTAC3 347cc10e-8a2e-464b-95a8-46c9bf006c10 90391fd8422d260364fc6daeb7b1d4dc {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03385.WGS.N.hg38 C3L-03385 GBM WGS blood_normal CPT0240540002 f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wgs_gdc_realn.bam 70348014229 BAM harmonized CPTAC3 9ddf2838-9c6e-46f8-a6fe-7df5a229e159 d60ccc4c3cedf7bc33c293eebbb6edcc {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03385.WGS.T C3L-03385 GBM WGS tumor CPT0239860006 CPT0239860006.WholeGenome.RP-2158.bam 23002457535 BAM submitted_aligned CPTAC3 e239e5f5-1111-4506-9c6f-45dde5665e7a 854b57a0e15dadf2454adfe0db6bb65f {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.WGS.T.hg38 C3L-03385 GBM WGS tumor CPT0239860006 d623559b-eaeb-4754-ad9a-9884f01c60a7_wgs_gdc_realn.bam 68019906430 BAM harmonized CPTAC3 1247c8ff-9ca8-448b-9a6b-fcf0385dde94 0cd8512ce89dd7f07cfcf967f690b5c8 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.WXS.N C3L-03385 GBM WXS blood_normal CPT0240540002 CPT0240540002.WholeExome.RP-1303.bam 23859008288 BAM submitted_aligned CPTAC3 7a89fc2e-3585-46d6-8832-3ac8e1b618ef 414cd571b8e03c1499ed2b1ecd61928b {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03385.WXS.N.hg38 C3L-03385 GBM WXS blood_normal CPT0240540002 f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wxs_gdc_realn.bam 33622502874 BAM harmonized CPTAC3 c5b5aae5-cc1e-4644-87d0-d21324604e2a b7d793f8e6fbed4c48a8a3b2c9df998a {"aliquot_tag": "ALQ_f9382fee", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03385.WXS.T C3L-03385 GBM WXS tumor CPT0239860006 CPT0239860006.WholeExome.RP-1303.bam 18539111036 BAM submitted_aligned CPTAC3 2240b4a0-874d-40e3-b446-d018f18f318d dca90fc0af41cbc47e3ff22cdb07c0ca {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03385.WXS.T.hg38 C3L-03385 GBM WXS tumor CPT0239860006 d623559b-eaeb-4754-ad9a-9884f01c60a7_wxs_gdc_realn.bam 26146677855 BAM harmonized CPTAC3 faa8ff85-2285-4533-9a3c-3e04b16f0a2e 9b342deb744830acbee0447bf12e7cb3 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03387.MethArray.Green.T C3L-03387 GBM Methylation_Array tumor CPT0224330009 203271750057_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 d2f2840a-3282-4bdf-9146-4703151b0f2e fd21ffc9e751a7550407efc68a77d761 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.MethArray.Red.T C3L-03387 GBM Methylation_Array tumor CPT0224330009 203271750057_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 0a13a70b-1834-49c7-bb4a-b8577607a969 b983054560a25d13b0a150f9453865f0 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.miRNA-Seq.S32_L006_R1.T C3L-03387 GBM miRNA-Seq tumor CPT0224330006 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L006_R1_001.unaln.bam 306438351 BAM S32_L006_R1 submitted_unaligned CPTAC3 668b7402-385a-4e7e-b67a-b0512613f1cf fc723295895b376338f1c8af37c6070f {"aliquot_tag": "ALQ_a80cf96e", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.miRNA-Seq.T.hg38 C3L-03387 GBM miRNA-Seq tumor CPT0224330006 9e922a37-27de-4f89-87e2-e48174487e3d_mirnaseq_gdc_realn.bam 350297417 BAM harmonized CPTAC3 e442c697-c5a7-462d-82c8-8fd01fd1069a ebb17e626f374350ff68275275d2890f {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.RNA-Seq.chimeric.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.chimeric.gdc_realn.bam 43441468 BAM chimeric harmonized CPTAC3 3bd39ce0-4235-4c6e-9085-0e45434c9211 d9001cdf665c1d020733cf626dcebfe8 {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.RNA-Seq.genomic.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.genomic.gdc_realn.bam 8960958968 BAM genomic harmonized CPTAC3 b8c30c78-7c8a-4aa1-9627-550ca1084510 9b9a19580e1eb2f1e663a4523468c27a {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.RNA-Seq.S4_L001_R1.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R1_001.fastq.gz 4290080477 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 441a47fe-4c5f-4806-953e-859958409898 e515442df5761c431f72c09afb9f7877 {"aliquot_tag": "ALQ_a80cf96e", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.RNA-Seq.S4_L001_R2.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R2_001.fastq.gz 4709248929 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 843aca93-5c65-4532-8c3e-4281ae000aff e11ddb625334f25b7826e33aace0e44e {"aliquot_tag": "ALQ_a80cf96e", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.RNA-Seq.transcriptome.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.transcriptome.gdc_realn.bam 10177705869 BAM transcriptome harmonized CPTAC3 f3c88c37-8dbb-4fd4-8d77-4b6d2a20d267 6abbf25cf93af35ba3d1a1fa67d37593 {"aliquot_tag": "ALQ_a80cf96e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.WGS.N C3L-03387 GBM WGS blood_normal CPT0226180002 CPT0226180002.WholeGenome.RP-1303.bam 50305187419 BAM submitted_aligned CPTAC3 a4addfa6-16cd-4ed4-abfc-20ada9fd1470 a8ec08b0b26acbde1db8d1f0c626f6f8 {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03387.WGS.N.hg38 C3L-03387 GBM WGS blood_normal CPT0226180002 4a22b011-e87f-4787-95a6-344797bb400c_wgs_gdc_realn.bam 72900382309 BAM harmonized CPTAC3 9ff7b3c7-589b-4c8b-b1f1-e24fb1c0a765 69b6c762bde62e687dd4816c473b7751 {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03387.WGS.T C3L-03387 GBM WGS tumor CPT0224330009 CPT0224330009.WholeGenome.RP-1303.bam 78260181663 BAM submitted_aligned CPTAC3 f0b229ff-afac-4d69-9603-86693aa65dd5 9961bb2c273ffa5cb320a6f33fa8def1 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.WGS.T.hg38 C3L-03387 GBM WGS tumor CPT0224330009 8899e630-70e4-4c89-865a-ccb799e2fe2e_wgs_gdc_realn.bam 114493276339 BAM harmonized CPTAC3 8ceb11e0-157a-4cdb-8392-db452c4e04b6 5c26418831042be2724d805345121fab {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.WXS.N C3L-03387 GBM WXS blood_normal CPT0226180002 CPT0226180002.WholeExome.RP-1303.bam 20960602102 BAM submitted_aligned CPTAC3 5776e90a-cfe5-4884-81a3-b441678f1a68 b18e3e944a880f7bc53114c6865ef05c {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03387.WXS.N.hg38 C3L-03387 GBM WXS blood_normal CPT0226180002 4a22b011-e87f-4787-95a6-344797bb400c_wxs_gdc_realn.bam 27562225680 BAM harmonized CPTAC3 306b0614-1f42-4115-9a1e-6d69007b0fa4 39af12e241af019dc187f38a0d34ea25 {"aliquot_tag": "ALQ_2e6bc44", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03387.WXS.T C3L-03387 GBM WXS tumor CPT0224330009 CPT0224330009.WholeExome.RP-1303.bam 22898239054 BAM submitted_aligned CPTAC3 9323f4e3-8e20-4c3d-9497-1bd5e752a65b 53f02f09937b816518699e03eb17ecc4 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03387.WXS.T.hg38 C3L-03387 GBM WXS tumor CPT0224330009 8899e630-70e4-4c89-865a-ccb799e2fe2e_wxs_gdc_realn.bam 30974758890 BAM harmonized CPTAC3 2b93a7ef-252b-411c-b7b8-bd01f6f085e9 6b332419ad98397d16c0425ab194c6f8 {"aliquot_tag": "ALQ_38b3e4ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.MethArray.Green.A C3L-03388 PDA Methylation_Array tissue_normal CPT0239920007 203561620162_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d5bde530-cfcf-41b3-b633-acde7a293454 1a364f1945f0b77a7d712854364dc7ea {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03388.MethArray.Green.T C3L-03388 PDA Methylation_Array tumor CPT0239910007 203561620089_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 7747945b-1651-413b-bb00-bc247a7145c8 28a93ed1e3cb03900c7f0dbf2a918c54 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.MethArray.Red.A C3L-03388 PDA Methylation_Array tissue_normal CPT0239920007 203561620162_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 c4d8d230-278a-4f99-9cb2-0d92c1737116 067ddb7c140bb1ffffc5a9ff9b1ed2b8 {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03388.MethArray.Red.T C3L-03388 PDA Methylation_Array tumor CPT0239910007 203561620089_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 2cf2c340-11e0-4fea-be82-a8d3367717bc 06d6a38b54d5d5256ab555bfe55bb614 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.miRNA-Seq.S24_L005_R1.T C3L-03388 PDA miRNA-Seq tumor CPT0239910010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATCACG_S24_L005_R1_001.unaln.bam 220226995 BAM S24_L005_R1 submitted_unaligned CPTAC3 4ab26243-d9aa-4fa9-94ff-ce34e600ad97 6ccd39de403cbe6c70f2eb4a8ec08761 {"aliquot_tag": "ALQ_2e527c42", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.miRNA-Seq.T.hg38 C3L-03388 PDA miRNA-Seq tumor CPT0239910010 20793ec0-af80-483e-ba5d-57612a270391_mirnaseq_gdc_realn.bam 247721626 BAM harmonized CPTAC3 39bcaeff-53d9-4fc3-9665-8793556d8eb7 218dd6c744fde5cab1659e571cf26030 {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.RNA-Seq.chimeric.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.chimeric.gdc_realn.bam 39633306 BAM chimeric harmonized CPTAC3 5b351289-323f-4377-a2f9-22274af39a85 e56d1ff16c831d9682aa92bf3a3f422c {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.RNA-Seq.genomic.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.genomic.gdc_realn.bam 7973194279 BAM genomic harmonized CPTAC3 7d02eba5-a44f-4ef5-8fe4-58af0ebd1ca1 8fa51047eaf4a9b4c4975e7bc90b58aa {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.RNA-Seq.S14_L004_R1.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R1_001.fastq.gz 3579047573 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 a1924850-236c-4907-9300-b2171ab11e5d ee0b4e7d557a3f958656330501c4f68c {"aliquot_tag": "ALQ_2e527c42", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.RNA-Seq.S14_L004_R2.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R2_001.fastq.gz 4044364470 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 64d5bbe7-888e-4aba-bf57-85cc0d91d9bd 0e70341c126fee19b61fc94dc7718477 {"aliquot_tag": "ALQ_2e527c42", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.RNA-Seq.transcriptome.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.transcriptome.gdc_realn.bam 10058377030 BAM transcriptome harmonized CPTAC3 278f93c1-cae5-4751-a660-d0c46900b4e5 e17d9fea4169579afdc8afd8c9b9ef2a {"aliquot_tag": "ALQ_2e527c42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.Targeted.T C3L-03388 PDA Targeted_Sequencing tumor CPT0239910007 CPT0239910007.CustomSelection.RP-1303.PDO-18786.bam 5226091518 BAM submitted_aligned CPTAC3 a7843207-2d68-408c-8c81-90a36f5d610b 59e993cc38e3d512613dce2c0e54767f {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.Targeted.T.hg38 C3L-03388 PDA Targeted_Sequencing tumor CPT0239910007 26f5781e-10b8-4069-8260-b68ea91c0148_targetedsequencing_gdc_realn.bam 7160865665 BAM harmonized CPTAC3 42dd686d-9960-4a6d-a648-d8852cf99bcb fd356b39b908866ca0d1b604a1dca132 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.WGS.N C3L-03388 PDA WGS blood_normal CPT0240550002 CPT0240550002.WholeGenome.RP-1303.bam 59336607667 BAM submitted_aligned CPTAC3 d074ac09-a80e-43f8-9f6a-ed926b9fea94 7d1b434baf10da9cce6d8abf8ee47df0 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03388.WGS.N.hg38 C3L-03388 PDA WGS blood_normal CPT0240550002 9deb55a2-79c7-42fb-a8ed-8fa369928e19_wgs_gdc_realn.bam 87902483557 BAM harmonized CPTAC3 6eabbd7b-9a61-4dce-931f-86a87340c9ed e13b085835871039b54cc7943e2e6a31 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03388.WGS.T C3L-03388 PDA WGS tumor CPT0239910007 CPT0239910007.WholeGenome.RP-1303.bam 88218827799 BAM submitted_aligned CPTAC3 e3b45da9-892d-489c-b1a0-2e7aa644c879 9570f5a0eee76d90a51764f5c8f89d8b {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.WGS.T.hg38 C3L-03388 PDA WGS tumor CPT0239910007 26f5781e-10b8-4069-8260-b68ea91c0148_wgs_gdc_realn.bam 128844148873 BAM harmonized CPTAC3 1605d3cb-eb0a-4932-9c8a-f318acf28a7c 59784c72cc11a3ee37a94d34a2783f41 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.WXS.A C3L-03388 PDA WXS tissue_normal CPT0239920007 CPT0239920007.WholeExome.RP-1303.bam 24536387839 BAM submitted_aligned CPTAC3 7c050dc6-7d9e-4f95-90ab-9c2c3caf0d13 ca6c6a9d5a7abec9b4948f85a597bb2b {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03388.WXS.A.hg38 C3L-03388 PDA WXS tissue_normal CPT0239920007 73841142-7e54-4bcd-a4af-10b3ac04fb41_wxs_gdc_realn.bam 33645964774 BAM harmonized CPTAC3 f872010b-d90f-46d4-8dfd-c2fe33c6a672 313fce8fdd90f0199566152e5f829977 {"aliquot_tag": "ALQ_ee8da270", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03388.WXS.N C3L-03388 PDA WXS blood_normal CPT0240550002 CPT0240550002.WholeExome.RP-1303.bam 36660730015 BAM submitted_aligned CPTAC3 6e39b6ee-d475-414b-a2da-89637bcf7cad 6385f57e3d10fa93c2e8a17789f6df30 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03388.WXS.N.hg38 C3L-03388 PDA WXS blood_normal CPT0240550002 9deb55a2-79c7-42fb-a8ed-8fa369928e19_wxs_gdc_realn.bam 50672432315 BAM harmonized CPTAC3 714cb467-bc1e-48f6-98c8-c7f08d14e740 d740f42f9eff2a8cc44bbad3d2fb12e0 {"aliquot_tag": "ALQ_c458065e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03388.WXS.T C3L-03388 PDA WXS tumor CPT0239910007 CPT0239910007.WholeExome.RP-1303.bam 46934107092 BAM submitted_aligned CPTAC3 600277d4-b61d-4995-b48b-df87757d03c3 96812dc2e4ba7dd21540fa5da3d01dca {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03388.WXS.T.hg38 C3L-03388 PDA WXS tumor CPT0239910007 26f5781e-10b8-4069-8260-b68ea91c0148_wxs_gdc_realn.bam 65906106565 BAM harmonized CPTAC3 55625724-26bf-4cf1-a58b-34c1d5509a32 f518b91cd46bca485904b9932b8591f8 {"aliquot_tag": "ALQ_a92dd8a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.MethArray.Green.T C3L-03390 GBM Methylation_Array tumor CPT0224390011 203271750057_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 57c87550-a9e8-43e6-9554-90970b614812 befff3e7a4c6425e6462d6e4d55e9810 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.MethArray.Red.T C3L-03390 GBM Methylation_Array tumor CPT0224390011 203271750057_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 cbb24d59-cd02-49f0-9ab9-a9fad7e5c51d 96f3cfd1a62db4a89a10173e81813118 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.miRNA-Seq.S33_L006_R1.T C3L-03390 GBM miRNA-Seq tumor CPT0224390007 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L006_R1_001.unaln.bam 217915775 BAM S33_L006_R1 submitted_unaligned CPTAC3 62b6f96c-5452-4340-a645-417daf6afc50 71c156e3879b817e42ef694fa987b722 {"aliquot_tag": "ALQ_95bbd159", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.miRNA-Seq.T.hg38 C3L-03390 GBM miRNA-Seq tumor CPT0224390007 5c54c93d-0ec9-4bf4-971e-6ca452ab288c_mirnaseq_gdc_realn.bam 244686145 BAM harmonized CPTAC3 aba741d6-2e25-4497-b40a-eaf9f3ffaef8 15d515ce262e7d461ec887600d0b757b {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.RNA-Seq.chimeric.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.chimeric.gdc_realn.bam 47822820 BAM chimeric harmonized CPTAC3 49983b02-c290-43cc-b255-21be7efc5856 ef63fd899474f9f1a60cb78a6e63048e {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.RNA-Seq.genomic.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.genomic.gdc_realn.bam 10085498850 BAM genomic harmonized CPTAC3 fab1b6e2-a283-4ff5-9384-3333bcef3d0c 790994ed1bc7ed3894a99c720963b314 {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.RNA-Seq.S9_L003_R1.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R1_001.fastq.gz 4863781844 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 14b78975-bb11-45e4-bf3a-6231ae15c533 6569922b65b2b84abe2d19f2bbc0a385 {"aliquot_tag": "ALQ_95bbd159", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.RNA-Seq.S9_L003_R2.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R2_001.fastq.gz 5588208336 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 f30d4502-0e7e-4f11-9f7d-0c329004b5a0 4b854575cd249247fb6e9eed38125003 {"aliquot_tag": "ALQ_95bbd159", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.RNA-Seq.transcriptome.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.transcriptome.gdc_realn.bam 12235347665 BAM transcriptome harmonized CPTAC3 a3325838-a6e4-4c04-bd94-3c735067aeb4 733e263ccf0f50696c6843abe6b39190 {"aliquot_tag": "ALQ_95bbd159", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.WGS.N C3L-03390 GBM WGS blood_normal CPT0226190002 CPT0226190002.WholeGenome.RP-1303.bam 56285195181 BAM submitted_aligned CPTAC3 e7880621-0431-45f0-a58a-746bdbdeb8b1 cf9c14e795769212d071f119a7aeeb4b {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03390.WGS.N.hg38 C3L-03390 GBM WGS blood_normal CPT0226190002 d9097320-6595-429e-8660-e663f114d0ee_wgs_gdc_realn.bam 83351438529 BAM harmonized CPTAC3 a9ce8457-208f-4107-99f2-3497084cfb8c 5162a4ca42436108c4d7f71dcfe960f6 {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03390.WGS.T C3L-03390 GBM WGS tumor CPT0224390011 CPT0224390011.WholeGenome.RP-1303.bam 78665301242 BAM submitted_aligned CPTAC3 f1fc03b5-8c96-4381-a6aa-3fe89a894f9d 1a5ae0191da7dd137f8cd7301b866824 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.WGS.T.hg38 C3L-03390 GBM WGS tumor CPT0224390011 90326737-c1a1-4276-aebc-450fe0e46dfa_wgs_gdc_realn.bam 115355123029 BAM harmonized CPTAC3 8d3e0c03-13dd-4a5e-971a-b3b3c731ac1f e28ed1bf0ce18df0e5c0c878aa778cb6 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.WXS.N C3L-03390 GBM WXS blood_normal CPT0226190002 CPT0226190002.WholeExome.RP-1303.bam 37906602852 BAM submitted_aligned CPTAC3 1fe56c94-0283-4d67-81e4-e016c56c72bf 7e8fb2b352a25be4b579b5f701738b5a {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03390.WXS.N.hg38 C3L-03390 GBM WXS blood_normal CPT0226190002 d9097320-6595-429e-8660-e663f114d0ee_wxs_gdc_realn.bam 52813682649 BAM harmonized CPTAC3 ff22df53-aa8c-4ac1-8fd3-eeb507d233c6 a193d857ea3c406854bc5854be7bf12b {"aliquot_tag": "ALQ_3f8695f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03390.WXS.T C3L-03390 GBM WXS tumor CPT0224390011 CPT0224390011.WholeExome.RP-1303.bam 28518710275 BAM submitted_aligned CPTAC3 3beaf56a-a3c2-4fe7-9796-709d2bc26178 ac143125ca9fd14fb783859bc7630e05 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03390.WXS.T.hg38 C3L-03390 GBM WXS tumor CPT0224390011 90326737-c1a1-4276-aebc-450fe0e46dfa_wxs_gdc_realn.bam 39394776431 BAM harmonized CPTAC3 bcc283db-72c1-424c-9fe7-8a8b744c2dae 25cf9bf8f7bea9ce41c18d561d634517 {"aliquot_tag": "ALQ_65c3452d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.MethArray.Green.T C3L-03392 GBM Methylation_Array tumor CPT0219080007 203219670054_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 11ca1dfd-fcbb-446f-8930-9e577b7a855b b96196229b47c16a47492cdcd7ff4bc0 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.MethArray.Red.T C3L-03392 GBM Methylation_Array tumor CPT0219080007 203219670054_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 2499381d-b5e7-4fff-a56d-afca5afa154f bc391f9c404d897001644a97682e9f90 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.miRNA-Seq.S31_L008_R1.T C3L-03392 GBM miRNA-Seq tumor CPT0219080010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L008_R1_001.unaln.bam 212480896 BAM S31_L008_R1 submitted_unaligned CPTAC3 14c329cb-8054-4e87-953d-30e4a1f0e88d 87775075ac3b8092f2832fcd3e83b2e4 {"aliquot_tag": "ALQ_46684886", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.miRNA-Seq.T.hg38 C3L-03392 GBM miRNA-Seq tumor CPT0219080010 4600cb46-a833-4bfb-92da-bd91183872f3_mirnaseq_gdc_realn.bam 238309944 BAM harmonized CPTAC3 5da98d64-ce8f-4452-b9af-83cc36e5510b dcfdd503fb70ecc2fa86a7dab8c7faf4 {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.RNA-Seq.chimeric.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.chimeric.gdc_realn.bam 32289590 BAM chimeric harmonized CPTAC3 e03c27da-a6c2-4611-9643-936ac8f004da 7228cd9277f09c2e07184acd99b3a08e {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.RNA-Seq.genomic.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.genomic.gdc_realn.bam 8987482437 BAM genomic harmonized CPTAC3 1df3ced7-2403-41b4-9a3f-f28554cbadcd 7147007dd96c77ab4c29a35b08c04853 {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.RNA-Seq.S30_L008_R1.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R1_001.fastq.gz 3680900354 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 6dd441ec-fb27-41f5-80b9-816dbeab8275 4c2bd75370171b65ecbed9a7e045454f {"aliquot_tag": "ALQ_46684886", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.RNA-Seq.S30_L008_R2.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R2_001.fastq.gz 3910349127 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 1335ed53-57d6-463c-82aa-af700b3b1553 822740b5ab69c3bcca84a26caa1297e2 {"aliquot_tag": "ALQ_46684886", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.RNA-Seq.transcriptome.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.transcriptome.gdc_realn.bam 11321765097 BAM transcriptome harmonized CPTAC3 1e24c063-fed7-4dfe-8636-fe2c697ff4e9 18f1abab0917ce3f32d77254fcfbf7f4 {"aliquot_tag": "ALQ_46684886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.WGS.N C3L-03392 GBM WGS blood_normal CPT0220450002 CPT0220450002.WholeGenome.RP-1303.bam 63771051310 BAM submitted_aligned CPTAC3 31374716-6c9e-44bd-9cf7-26b9b6759f2e b80ae16db1d9fae7af0918aaf61f67ff {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03392.WGS.N.hg38 C3L-03392 GBM WGS blood_normal CPT0220450002 5d4b78a2-4914-4360-afee-3b4972851627_wgs_gdc_realn.bam 91133707316 BAM harmonized CPTAC3 015f04c9-ea83-461e-b589-16d23a1373f5 516a012dcb9fca39b5339fe6ef5a7f01 {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03392.WGS.T C3L-03392 GBM WGS tumor CPT0219080007 CPT0219080007.WholeGenome.RP-1303.bam 59830116648 BAM submitted_aligned CPTAC3 f548d6aa-d69d-479d-95b8-8af58e310b5a c5b35c3875b32b2018fc4f6c0b0c5d41 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.WGS.T.hg38 C3L-03392 GBM WGS tumor CPT0219080007 cf4c95bb-37e5-424b-b1bc-e4de8f4a81cd_wgs_gdc_realn.bam 86338605963 BAM harmonized CPTAC3 00dabba2-edbc-4787-ab50-7d8d7aa7a959 7607128f35208f23e9ca999cda529dea {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.WXS.N C3L-03392 GBM WXS blood_normal CPT0220450002 CPT0220450002.WholeExome.RP-1303.bam 22863749107 BAM submitted_aligned CPTAC3 e193928f-e27d-429d-817e-c6b43f96f87d b64b4ca9fb2550170952ac9b1a73f87c {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03392.WXS.N.hg38 C3L-03392 GBM WXS blood_normal CPT0220450002 5d4b78a2-4914-4360-afee-3b4972851627_wxs_gdc_realn.bam 31249486032 BAM harmonized CPTAC3 d0ad30e4-011e-415b-a208-9b156b2cc89b 2b877d516440abe3c613a3af8cc20061 {"aliquot_tag": "ALQ_c96bdc7c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03392.WXS.T C3L-03392 GBM WXS tumor CPT0219080007 CPT0219080007.WholeExome.RP-1303.bam 25067481514 BAM submitted_aligned CPTAC3 f1032b46-3610-4409-9aa7-6519a2781c67 123c1c33caea67085a59b3704fcc8b52 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03392.WXS.T.hg38 C3L-03392 GBM WXS tumor CPT0219080007 cf4c95bb-37e5-424b-b1bc-e4de8f4a81cd_wxs_gdc_realn.bam 35093321070 BAM harmonized CPTAC3 f643293b-88fd-43b2-8f32-1ee73fca4566 ca93baf775fda94998dc03cde9109141 {"aliquot_tag": "ALQ_c117ec64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.MethArray.Green.A C3L-03394 PDA Methylation_Array tissue_normal CPT0224470007 203561450018_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6093fa14-a942-4a0d-8d6e-b99da931fc7a a60c7340f63e4689d17769e4ff765ee0 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03394.MethArray.Green.T C3L-03394 PDA Methylation_Array tumor CPT0224460007 203561620080_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d8fbae91-e302-44fb-8555-10fabded186d 8e3156f9bf0016b06f903adf5c48c497 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.MethArray.Red.A C3L-03394 PDA Methylation_Array tissue_normal CPT0224470007 203561450018_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 e92abecb-bd1c-4ba7-8c1e-00b1fc32337e 8f44910ded6b8c8e643701095d539af4 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03394.MethArray.Red.T C3L-03394 PDA Methylation_Array tumor CPT0224460007 203561620080_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 6c3dc853-93ff-4a37-b870-fc0783473868 ac2d677077da3670bd5ec74430fd55be {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.miRNA-Seq.S31_L004_R1.T C3L-03394 PDA miRNA-Seq tumor CPT0224460010 190813_UNC32-K00270_0196_AH5MCWBBXY_CGATGT_S31_L004_R1_001.unaln.bam 268911384 BAM S31_L004_R1 submitted_unaligned CPTAC3 5bfe37d7-0d13-4e68-a74a-08a325650f4e 677e50f77caf236e89e85c7d61ac8072 {"aliquot_tag": "ALQ_8d91d2d2", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.miRNA-Seq.T.hg38 C3L-03394 PDA miRNA-Seq tumor CPT0224460010 bf997f28-674d-4404-b053-0d3b71365543_mirnaseq_gdc_realn.bam 307368018 BAM harmonized CPTAC3 973d2b64-00a5-4d2f-98ce-a95a963dd883 c023e9ac0c9a0295afac71c1de286fdb {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.RNA-Seq.chimeric.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.chimeric.gdc_realn.bam 173679534 BAM chimeric harmonized CPTAC3 934bd5ad-79a1-4263-ab8e-abdd3eada3d8 108d82f17017d25bc8955ba710d043fd {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.RNA-Seq.genomic.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.genomic.gdc_realn.bam 11919073814 BAM genomic harmonized CPTAC3 e95e2227-7d9b-4b28-b1cc-a8f7dd1d009d a19ed43ccb96a4a2929c5745b6e70ec1 {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.RNA-Seq.S10_L008_R1.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R1_001.fastq.gz 4407192011 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 e3888b98-9e02-4ba8-a9c3-9f0997c579fe 175a491f3d1ab50b78591e609e4167d1 {"aliquot_tag": "ALQ_8d91d2d2", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.RNA-Seq.S10_L008_R2.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R2_001.fastq.gz 4500709300 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 e23e4e4c-16a8-4696-acd6-4b60cda0de5f 51563473da0936b7b6c706f4fcdb133a {"aliquot_tag": "ALQ_8d91d2d2", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.RNA-Seq.transcriptome.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.transcriptome.gdc_realn.bam 8807523120 BAM transcriptome harmonized CPTAC3 e48ea980-1288-43a4-baad-4848223699fc 06dd8b47387034699dda222f653cf30d {"aliquot_tag": "ALQ_8d91d2d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.Targeted.T C3L-03394 PDA Targeted_Sequencing tumor CPT0224460007 CPT0224460007.CustomSelection.RP-1303.PDO-18786.bam 5226646505 BAM submitted_aligned CPTAC3 93956038-3fbb-49a7-8776-0f56584287a8 0d3ac02f4648e79e4f8c236d0de4c021 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.Targeted.T.hg38 C3L-03394 PDA Targeted_Sequencing tumor CPT0224460007 431abcdf-62b6-4732-9771-3256aa0dd9ac_targetedsequencing_gdc_realn.bam 7333257724 BAM harmonized CPTAC3 8fa1ce60-8191-49a6-8c52-d04081afda86 1b8aba33441be87a69d7b094e3b5e31e {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.WGS.N C3L-03394 PDA WGS blood_normal CPT0226210002 CPT0226210002.WholeGenome.RP-1303.bam 59926144752 BAM submitted_aligned CPTAC3 3dfcc367-a5da-4b7c-9e3c-b935cf58ce90 7890eced9dae114aca55c8701d1b230a {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03394.WGS.N.hg38 C3L-03394 PDA WGS blood_normal CPT0226210002 13d28581-4815-478d-9d61-e5b65125a5f3_wgs_gdc_realn.bam 87193743192 BAM harmonized CPTAC3 9a5fd7e4-f999-4b2c-bf4f-9614fe6f7028 8a0893e46374597b61831b9b0a1b127d {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03394.WGS.T C3L-03394 PDA WGS tumor CPT0224460007 CPT0224460007.WholeGenome.RP-1303.bam 82964955310 BAM submitted_aligned CPTAC3 8080e1ee-fefa-403b-8af1-e61825d1a584 70d9aa491d3c49e9a42abc9ddedbb5f2 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.WGS.T.hg38 C3L-03394 PDA WGS tumor CPT0224460007 431abcdf-62b6-4732-9771-3256aa0dd9ac_wgs_gdc_realn.bam 120959357830 BAM harmonized CPTAC3 4f8bc9e2-6f93-48d6-a5a2-85d5ca842255 3f7c691a97745815a38d774144c30659 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.WXS.A C3L-03394 PDA WXS tissue_normal CPT0224470007 CPT0224470007.WholeExome.RP-1303.bam 19570992289 BAM submitted_aligned CPTAC3 94ba40d0-4e76-4305-b2c0-7fcaa3f8779d 5f583ca25a192be638b41440447a9fc3 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03394.WXS.A.hg38 C3L-03394 PDA WXS tissue_normal CPT0224470007 75db2bb5-ec59-4597-8326-477bbc02d347_wxs_gdc_realn.bam 27136326752 BAM harmonized CPTAC3 74c6db05-3be7-45d9-b2e7-65d92a69bce8 97fc4bd09c7eb989862e29db98457bb8 {"aliquot_tag": "ALQ_378e5f80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03394.WXS.N C3L-03394 PDA WXS blood_normal CPT0226210002 CPT0226210002.WholeExome.RP-1303.bam 32328885780 BAM submitted_aligned CPTAC3 e897fe6b-63ee-425a-8f1f-b443a6f35e6b bec862f8853f2a6705ab44f98cc38a8a {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03394.WXS.N.hg38 C3L-03394 PDA WXS blood_normal CPT0226210002 13d28581-4815-478d-9d61-e5b65125a5f3_wxs_gdc_realn.bam 44764873472 BAM harmonized CPTAC3 f7cd30e2-e7e4-4593-8cb1-73b6c76916bb df27e44a94d2d37d8e72094793996b4e {"aliquot_tag": "ALQ_8962ac9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03394.WXS.T C3L-03394 PDA WXS tumor CPT0224460007 CPT0224460007.WholeExome.RP-1303.bam 52083143591 BAM submitted_aligned CPTAC3 19407ae6-5903-49e7-845b-ef9fd3af1cc9 f8f3f979f4fbc978a8957027250e4787 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03394.WXS.T.hg38 C3L-03394 PDA WXS tumor CPT0224460007 431abcdf-62b6-4732-9771-3256aa0dd9ac_wxs_gdc_realn.bam 73187944820 BAM harmonized CPTAC3 5543a12b-57ca-408e-816b-6f3e2d0718b5 088a21c1ae76ab2ac7fd3c9b5e486195 {"aliquot_tag": "ALQ_aee7630", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.MethArray.Green.A C3L-03395 PDA Methylation_Array tissue_normal CPT0276030009 203561620072_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0b7b6bfa-75ef-4537-84cb-6498f515dfbc f44089225ab8c65dfea87af94a8aa1e5 {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03395.MethArray.Green.T C3L-03395 PDA Methylation_Array tumor CPT0276010006 203561450099_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9f8bd393-e9a5-4520-aabc-df335320a66b 7113134d65ec80dd786558da4992ca8e {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.MethArray.Red.A C3L-03395 PDA Methylation_Array tissue_normal CPT0276030009 203561620072_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 6379c743-5fb9-40d7-852f-fd6aaab39b19 c8a8f72545bb52ca1f410321be4f1bb9 {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03395.MethArray.Red.T C3L-03395 PDA Methylation_Array tumor CPT0276010006 203561450099_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 d1d0d0dd-47f4-4841-84dc-8389eef10126 8dcc1667b7eee1e117c5a18a1a1891a3 {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.miRNA-Seq.S26_L003_R1.T C3L-03395 PDA miRNA-Seq tumor CPT0276010009 190813_UNC32-K00270_0196_AH5MCWBBXY_TACAGC_S26_L003_R1_001.unaln.bam 182692906 BAM S26_L003_R1 submitted_unaligned CPTAC3 398799d9-a192-47ae-8f92-39db8d9748fb 54626fa20d7b625a5b9e2e469832f07e {"aliquot_tag": "ALQ_1b98da7c", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.miRNA-Seq.T.hg38 C3L-03395 PDA miRNA-Seq tumor CPT0276010009 16746a0b-86d7-4ea3-a1b6-ac0546c9817f_mirnaseq_gdc_realn.bam 206536175 BAM harmonized CPTAC3 02f37894-31a7-4652-8308-c7adc26a68c7 0128674e00e2e9d7357f00e764d57981 {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.RNA-Seq.chimeric.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.chimeric.gdc_realn.bam 40845084 BAM chimeric harmonized CPTAC3 d970eaff-8a56-4812-b75b-e6820dd5baf3 87211913070bc8f6f839cdeeb2f361ce {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.RNA-Seq.genomic.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.genomic.gdc_realn.bam 9600345071 BAM genomic harmonized CPTAC3 5571151e-d599-4879-ac3d-8b799251dda6 2e40975013a968e6d2490af8ef36f602 {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.RNA-Seq.S15_L004_R1.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R1_001.fastq.gz 4237385037 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 0750a61a-81eb-4579-9497-2769252187dd 5055ef7ea4c4bdae6b0371d7541ab155 {"aliquot_tag": "ALQ_1b98da7c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.RNA-Seq.S15_L004_R2.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R2_001.fastq.gz 4907359123 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 41738e5a-a6b4-4fec-8236-77c1c1541095 a59393c55a3ec7a2313e526eb0a7f57a {"aliquot_tag": "ALQ_1b98da7c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.RNA-Seq.transcriptome.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.transcriptome.gdc_realn.bam 12246004788 BAM transcriptome harmonized CPTAC3 2a92e793-ebd9-4b67-a94a-d6e85c6276da dec9ba21afc79f974371a34e9aacfe18 {"aliquot_tag": "ALQ_1b98da7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.Targeted.T C3L-03395 PDA Targeted_Sequencing tumor CPT0276010006 CPT0276010006.CustomSelection.RP-1303.PDO-18786.bam 4580467288 BAM submitted_aligned CPTAC3 ae3c69ea-6cdf-4aa8-86a3-f00506992493 4f37b44e2d9380cf90b10cb1b41a1f4c {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.Targeted.T.hg38 C3L-03395 PDA Targeted_Sequencing tumor CPT0276010006 6c385d7e-9b75-4b98-92f8-903fd6337d95_targetedsequencing_gdc_realn.bam 6464477728 BAM harmonized CPTAC3 ced2ea66-2409-4c23-a343-51dc874ef10b 5e049bc80024db607368e4140a4bae1a {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.WGS.N C3L-03395 PDA WGS blood_normal CPT0265950002 CPT0265950002.WholeGenome.RP-1303.bam 71130572885 BAM submitted_aligned CPTAC3 13b74f54-2518-4a32-917b-e85c88feab56 00096a982a87e433ba70761c368a0a69 {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03395.WGS.N.hg38 C3L-03395 PDA WGS blood_normal CPT0265950002 ccbbc857-6f4f-4bbb-8faa-84b5092fe6d6_wgs_gdc_realn.bam 102598740958 BAM harmonized CPTAC3 0f30ed67-8804-4134-b186-d2a5532f7997 edeba8426551ff4f87337e8b62db12d2 {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03395.WGS.T C3L-03395 PDA WGS tumor CPT0276010006 CPT0276010006.WholeGenome.RP-1303.bam 56955498714 BAM submitted_aligned CPTAC3 7abaa793-37c7-496f-87b0-1c241df39406 bb56cb020ca2c1dadaf1fe9924e53b96 {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.WGS.T.hg38 C3L-03395 PDA WGS tumor CPT0276010006 6c385d7e-9b75-4b98-92f8-903fd6337d95_wgs_gdc_realn.bam 81236680801 BAM harmonized CPTAC3 eb79c991-de2c-4091-872f-d93db10d9d5b ff90e26ad50a430ef637137193d2fc3d {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.WXS.A C3L-03395 PDA WXS tissue_normal CPT0276030009 CPT0276030009.WholeExome.RP-1303.bam 30219699001 BAM submitted_aligned CPTAC3 3eb4ae3c-1f21-4931-bbc1-b693ee1f23df f44534032589f8ba90a470ff89c7856d {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03395.WXS.A.hg38 C3L-03395 PDA WXS tissue_normal CPT0276030009 d2d46559-47a2-4764-be16-0eb4012287e2_wxs_gdc_realn.bam 40918593054 BAM harmonized CPTAC3 55e1c3d2-9ffe-48f8-abf9-199b58798ce6 f8b8004836cec260b63e33b91d5e7bf9 {"aliquot_tag": "ALQ_6158891c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03395.WXS.N C3L-03395 PDA WXS blood_normal CPT0265950002 CPT0265950002.WholeExome.RP-1303.bam 21609893728 BAM submitted_aligned CPTAC3 f55f1924-ad22-4266-bae4-64769e718af4 146602e09c65e73b9777403205733fde {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03395.WXS.N.hg38 C3L-03395 PDA WXS blood_normal CPT0265950002 ccbbc857-6f4f-4bbb-8faa-84b5092fe6d6_wxs_gdc_realn.bam 29108131230 BAM harmonized CPTAC3 ad2b9fe6-ba83-4635-bc37-6deebbcdaa38 043660abfe65f0aeb6b3ca4c65d03687 {"aliquot_tag": "ALQ_a387eeff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03395.WXS.T C3L-03395 PDA WXS tumor CPT0276010006 CPT0276010006.WholeExome.RP-1303.bam 33041758289 BAM submitted_aligned CPTAC3 c24d9399-56e4-4886-8c21-c22e2391df0a 93993963bc690eda55eba48b34672f89 {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03395.WXS.T.hg38 C3L-03395 PDA WXS tumor CPT0276010006 6c385d7e-9b75-4b98-92f8-903fd6337d95_wxs_gdc_realn.bam 44800051289 BAM harmonized CPTAC3 94882d50-5d24-460d-83ee-32fc8801ab2d df48aac0d33aefeee89eec7cf74508be {"aliquot_tag": "ALQ_8b27c7ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.MethArray.Green.T C3L-03400 GBM Methylation_Array tumor CPT0224540010 203281980258_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 45e29e19-34bd-4a33-adb1-37b4963e6922 3599b6a50255bf2c783f1abe1755f35e {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.MethArray.Red.T C3L-03400 GBM Methylation_Array tumor CPT0224540010 203281980258_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 110a35b4-5729-4ff8-b5ae-177b037ced52 de236bb6271c9e72bdb29fb8d04eb0cf {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.miRNA-Seq.S34_L006_R1.T C3L-03400 GBM miRNA-Seq tumor CPT0224540007 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L006_R1_001.unaln.bam 250092665 BAM S34_L006_R1 submitted_unaligned CPTAC3 7f056ee2-4f80-4905-b693-60656e0c003e acb4bfa5e14088ad11d8dd93cfd69347 {"aliquot_tag": "ALQ_bb72f6f5", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.miRNA-Seq.T.hg38 C3L-03400 GBM miRNA-Seq tumor CPT0224540007 7d6319dc-ad4a-4903-a45c-c1fa25f77998_mirnaseq_gdc_realn.bam 282332942 BAM harmonized CPTAC3 ab2eb35d-73a4-44fc-bb89-9dff31a5fb5e 2ce58dc2c8138e028b199aa530bb34a9 {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.RNA-Seq.chimeric.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.chimeric.gdc_realn.bam 36844540 BAM chimeric harmonized CPTAC3 dee27a45-2585-4466-8094-ef98c267a351 34524317f0e60720fd4fbc3d39633866 {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.RNA-Seq.genomic.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.genomic.gdc_realn.bam 8452363970 BAM genomic harmonized CPTAC3 2949138f-db82-434c-9275-2a025e3811cf cee673a6a2b87702588ed4f47a174853 {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.RNA-Seq.S11_L003_R1.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R1_001.fastq.gz 3706034638 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 70531ebf-08c9-4f56-aa0a-52c009c298f4 03f5b8c14d526beebd5dd2aaf5111318 {"aliquot_tag": "ALQ_bb72f6f5", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.RNA-Seq.S11_L003_R2.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R2_001.fastq.gz 4240652850 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 642ffec8-e51b-42da-a88f-a3db6ad879e2 9bf49ac3db4759453125319b1f5ce8da {"aliquot_tag": "ALQ_bb72f6f5", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.RNA-Seq.transcriptome.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.transcriptome.gdc_realn.bam 10269507507 BAM transcriptome harmonized CPTAC3 606da76d-aee1-4532-90fd-4e7096553748 6f5779d3133a526108765176b838599d {"aliquot_tag": "ALQ_bb72f6f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.WGS.N C3L-03400 GBM WGS blood_normal CPT0226220002 CPT0226220002.WholeGenome.RP-1303.bam 67662788509 BAM submitted_aligned CPTAC3 04360ecd-5fed-445e-9c1c-0964f8355df9 97a59f05b884330d03b794f9dfc9b07e {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03400.WGS.N.hg38 C3L-03400 GBM WGS blood_normal CPT0226220002 8fe75c1a-636f-4248-b8d3-63ece1e9c2fb_wgs_gdc_realn.bam 98876232389 BAM harmonized CPTAC3 27ef4fff-c92d-461f-aaf5-ab3f31c0a342 791c0d257096d7d53392611b9829f2af {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03400.WGS.T C3L-03400 GBM WGS tumor CPT0224540010 CPT0224540010.WholeGenome.RP-1303.bam 56562722769 BAM submitted_aligned CPTAC3 e9af3bff-a099-4bf8-b76f-8481a157bc55 95ce7526cabf51ab246eb76441ef8d15 {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.WGS.T.hg38 C3L-03400 GBM WGS tumor CPT0224540010 6e089e91-8946-4c41-9a59-c97549e0435c_wgs_gdc_realn.bam 81513667612 BAM harmonized CPTAC3 84dde002-3ddb-47de-a3c0-9b10942e48e2 7b3dcfd0c6bccd44c56a5be60d2ea6ff {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.WXS.N C3L-03400 GBM WXS blood_normal CPT0226220002 CPT0226220002.WholeExome.RP-1303.bam 35425436835 BAM submitted_aligned CPTAC3 a1502bd8-87a5-4a24-86ea-78dc52e4e8b7 755afc7c68d403bf42c9b3efd2c9b16d {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03400.WXS.N.hg38 C3L-03400 GBM WXS blood_normal CPT0226220002 8fe75c1a-636f-4248-b8d3-63ece1e9c2fb_wxs_gdc_realn.bam 48001197894 BAM harmonized CPTAC3 a34a5002-3d9a-434e-bc17-ff9f6f3715b2 e2b671a98f3e3341ef329103bbb8b6c2 {"aliquot_tag": "ALQ_cec2d64b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03400.WXS.T C3L-03400 GBM WXS tumor CPT0224540010 CPT0224540010.WholeExome.RP-1303.bam 29226244296 BAM submitted_aligned CPTAC3 ac4dc844-e6d2-4338-8ab9-f665c7fcc403 9dd3f6ea78634f86dfee6391857ce0c0 {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03400.WXS.T.hg38 C3L-03400 GBM WXS tumor CPT0224540010 6e089e91-8946-4c41-9a59-c97549e0435c_wxs_gdc_realn.bam 40447059748 BAM harmonized CPTAC3 7f461d9c-84db-42d0-8841-ae9f188d675a b166dee1a8fe627adf0a7de912ff102d {"aliquot_tag": "ALQ_3c0d5217", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.MethArray.Green.T C3L-03405 GBM Methylation_Array tumor CPT0224600009 203220070165_R03C01_Grn.idat 13676207 IDAT Green NA CPTAC3 e0e23e13-61fd-4eae-abb7-8808bd5a59dc 9515b98b8c1a8dcbfa53ec63c17525ef {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.MethArray.Red.T C3L-03405 GBM Methylation_Array tumor CPT0224600009 203220070165_R03C01_Red.idat 13676207 IDAT Red NA CPTAC3 46fc17bf-9902-4ade-8444-309e2b9a1e19 08f1b26c0a586aa5628d0b883299c298 {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.miRNA-Seq.S35_L006_R1.T C3L-03405 GBM miRNA-Seq tumor CPT0224600006 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L006_R1_001.unaln.bam 255754624 BAM S35_L006_R1 submitted_unaligned CPTAC3 6433841e-eb0f-4d57-a640-892f9fa316f7 02b6923eab12b068beae096a7e66ebf2 {"aliquot_tag": "ALQ_bf61120d", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.miRNA-Seq.T.hg38 C3L-03405 GBM miRNA-Seq tumor CPT0224600006 e6b6728a-f563-4926-b61d-f68ac7450ff3_mirnaseq_gdc_realn.bam 288212005 BAM harmonized CPTAC3 c89e9b44-9f59-4b9f-8b06-efd999cafc62 9bbf785a3d7527ef971741954ce0a550 {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.RNA-Seq.chimeric.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.chimeric.gdc_realn.bam 40830059 BAM chimeric harmonized CPTAC3 924ee0ec-733b-4b77-af9e-e8019a360bad 44542f71c2525a464a6925f509293c12 {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.RNA-Seq.genomic.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.genomic.gdc_realn.bam 8607763269 BAM genomic harmonized CPTAC3 0e450538-0f66-415e-a783-7d61fc967b37 d4e9ed7b237494450605afeeb3faeb6b {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.RNA-Seq.S10_L003_R1.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R1_001.fastq.gz 4225515484 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 9cac0fc4-002c-49e6-b009-08e3a79f147a 05c8417cd5b9f75b3d25886724dff374 {"aliquot_tag": "ALQ_bf61120d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.RNA-Seq.S10_L003_R2.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R2_001.fastq.gz 4668539169 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 6e72bfb7-d0de-4f03-821d-673d90b9eb8c 2ae475fe406c8bd65020a7ddc77062ef {"aliquot_tag": "ALQ_bf61120d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.RNA-Seq.transcriptome.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.transcriptome.gdc_realn.bam 9727472388 BAM transcriptome harmonized CPTAC3 d8204bf6-7699-4b6f-a04f-13855ef90283 657a3d19603c38d89f09473455e9f604 {"aliquot_tag": "ALQ_bf61120d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.scRNA-Seq.S5_L002_R1.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R1_001.fastq.gz 12671364384 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 43e57336-d3c7-46a8-81de-b42300b8e839 4fd6c918169df97615f47784690031b5 {"aliquot_tag": "ALQ_d610d7c3", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.scRNA-Seq.S5_L002_R2.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R2_001.fastq.gz 26167417692 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 184382d4-821c-40b1-9f60-51bfc3802a6b 55a54e58f07cb31a4e3f66cf3018b285 {"aliquot_tag": "ALQ_d610d7c3", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.scRNA-Seq.T.hg38 C3L-03405 GBM scRNA-Seq tumor CPT0224600013 possorted_genome_bam.bam 36827067033 BAM harmonized CPTAC3 271662dd-63fb-4109-8e2a-d6f5bae3e1f6 fd4f85577a2bc8778e31dd9b9198da24 {"aliquot_tag": "ALQ_d610d7c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.WGS.N C3L-03405 GBM WGS blood_normal CPT0226240002 CPT0226240002.WholeGenome.RP-1303.bam 68922224835 BAM submitted_aligned CPTAC3 24756334-9a9c-4858-a1cd-7ee5372a812e fbf9adf0ab4bb762ecdc1397f5d56159 {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03405.WGS.N.hg38 C3L-03405 GBM WGS blood_normal CPT0226240002 403a82f6-1996-4dc4-807e-60dfeb23d36c_wgs_gdc_realn.bam 100015884430 BAM harmonized CPTAC3 b380a40e-9f97-46f5-b417-ab8df4fbacb5 df8da9780ef47c9e19f0fe6242260cc5 {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03405.WGS.T C3L-03405 GBM WGS tumor CPT0224600009 CPT0224600009.WholeGenome.RP-1303.bam 64505884561 BAM submitted_aligned CPTAC3 0eeb8b2a-70bb-472c-a048-fdeda1bdaf3a 0a687a12bcff23427c1ab1958f3ea397 {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.WGS.T.hg38 C3L-03405 GBM WGS tumor CPT0224600009 91d5eca6-731f-4bf2-9e06-c0985c9a7d05_wgs_gdc_realn.bam 93470200145 BAM harmonized CPTAC3 7ff96dc5-e933-4c93-a2f2-878cc1920047 0c7ead0151ea26a852f177b8d7fa597d {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.WXS.N C3L-03405 GBM WXS blood_normal CPT0226240002 CPT0226240002.WholeExome.RP-1303.bam 24907172659 BAM submitted_aligned CPTAC3 abaa12a2-462c-4114-bfdf-7eac1046fc08 2faeabde779f4d17c914891282568e52 {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03405.WXS.N.hg38 C3L-03405 GBM WXS blood_normal CPT0226240002 403a82f6-1996-4dc4-807e-60dfeb23d36c_wxs_gdc_realn.bam 33911611918 BAM harmonized CPTAC3 00aeb77c-ac81-458f-a256-936325fde6ce 2edce38fc26cadf0094cbaebda1ae79c {"aliquot_tag": "ALQ_418223eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03405.WXS.T C3L-03405 GBM WXS tumor CPT0224600009 CPT0224600009.WholeExome.RP-1303.bam 21839114465 BAM submitted_aligned CPTAC3 891c04b6-c846-4e3a-b218-b27846610713 328f7df2e2539ba3500eb30aa15e8d50 {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03405.WXS.T.hg38 C3L-03405 GBM WXS tumor CPT0224600009 91d5eca6-731f-4bf2-9e06-c0985c9a7d05_wxs_gdc_realn.bam 31322936502 BAM harmonized CPTAC3 01eae778-47ee-4360-8669-af17ab0b438b 3f54a0f235551595b557fd7adf6cfdeb {"aliquot_tag": "ALQ_2fde0f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.MethArray.Green.T C3L-03407 GBM Methylation_Array tumor CPT0190360007 203219650211_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 e6629222-bd00-4be7-918e-617b3fb939d3 bf56f99ecb9f74d0d8ac85222a478aae {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.MethArray.Red.T C3L-03407 GBM Methylation_Array tumor CPT0190360007 203219650211_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 73c2e41c-367f-41ea-a186-0b7851b46e2c e0aaadb5e1b080909fdfd83ab9a8f129 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.miRNA-Seq.S36_L004_R1.T C3L-03407 GBM miRNA-Seq tumor CPT0190360010 181219_UNC31-K00269_0173_BHYGJJBBXX_CGGAAT_S36_L004_R1_001.unaln.bam 201515266 BAM S36_L004_R1 submitted_unaligned CPTAC3 1f03add2-e921-45a8-9bd7-9c9d2fb70085 8bf65f850f0a3ff46b17138ccba4ee35 {"aliquot_tag": "ALQ_3ce6ea", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.miRNA-Seq.T.hg38 C3L-03407 GBM miRNA-Seq tumor CPT0190360010 98b724d6-8b97-47f6-9dff-762d539e78ad_mirnaseq_gdc_realn.bam 222895872 BAM harmonized CPTAC3 71bd7855-ff4d-4736-b8ee-45e8610da5c0 9a0ba5c8105b9f97ab797ab331896e08 {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.RNA-Seq.chimeric.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.chimeric.gdc_realn.bam 236977214 BAM chimeric harmonized CPTAC3 18ab21b5-0eed-412c-9abf-ac22e7450a35 f9bcfaea75e4bd9d7166e77e36866dcb {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.RNA-Seq.genomic.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.genomic.gdc_realn.bam 7596564006 BAM genomic harmonized CPTAC3 64ac6dd1-66c6-45af-ac9c-e1cc26fa925e a34dfa7194045373bd8aa10678f25521 {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.RNA-Seq.S11_L004_R1.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R1_001.fastq.gz 3311998605 FASTQ S11_L004_R1 submitted_unaligned CPTAC3 8078474f-74ce-4a21-a1c6-28c2f33c7b82 ceb3c564458688d7bad078fc6339dd3d {"aliquot_tag": "ALQ_3ce6ea", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.RNA-Seq.S11_L004_R2.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R2_001.fastq.gz 3485263834 FASTQ S11_L004_R2 submitted_unaligned CPTAC3 00ca5043-9ebf-4436-a321-bb9576d0723c 826f16235b280ff192af00729c49effd {"aliquot_tag": "ALQ_3ce6ea", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.RNA-Seq.transcriptome.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.transcriptome.gdc_realn.bam 9400170014 BAM transcriptome harmonized CPTAC3 ecda9804-4a23-43c4-b5c9-423bc03bc67e 48eec3d34f2e2256f6c4818b84efd647 {"aliquot_tag": "ALQ_3ce6ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.WGS.N C3L-03407 GBM WGS blood_normal CPT0191160002 CPT0191160002.WholeGenome.RP-1303.bam 64750280441 BAM submitted_aligned CPTAC3 975f974b-9217-4ab9-b951-3ceb455d88bc 9bcbfbb20a89a2a9023bad484e2712dc {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03407.WGS.N.hg38 C3L-03407 GBM WGS blood_normal CPT0191160002 4f757bbc-1252-4331-aad8-a2a73e7fd008_wgs_gdc_realn.bam 92980568150 BAM harmonized CPTAC3 fda424ce-c105-499d-b8c1-f90fee8971ac 79c2d73b6baf3b8176e4acec5637e7f2 {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03407.WGS.T C3L-03407 GBM WGS tumor CPT0190360007 CPT0190360007.WholeGenome.RP-1303.bam 74377876565 BAM submitted_aligned CPTAC3 7617d968-d289-458b-b1e6-52e8f8312d92 87f88d02b361e730052c5cf221a61871 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.WGS.T.hg38 C3L-03407 GBM WGS tumor CPT0190360007 03da8212-cc53-424c-9b84-3669bd1e1d25_wgs_gdc_realn.bam 112888620419 BAM harmonized CPTAC3 c12fdcd8-7fc6-44ea-b03c-772bf07d85b8 66b1877a30375bd39fddde42ca03c15d {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.WXS.N C3L-03407 GBM WXS blood_normal CPT0191160002 CPT0191160002.WholeExome.RP-1303.bam 23952138429 BAM submitted_aligned CPTAC3 bdba9014-198b-42e5-87d4-a9dbab9b64f4 b78627e4a2d2179e2cac58e5cdaedf12 {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03407.WXS.N.hg38 C3L-03407 GBM WXS blood_normal CPT0191160002 4f757bbc-1252-4331-aad8-a2a73e7fd008_wxs_gdc_realn.bam 32955953431 BAM harmonized CPTAC3 3c489ec2-f590-40dc-b963-c04561e2618b de8be7d894117de9f8db243cf0e6f869 {"aliquot_tag": "ALQ_1c961c38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03407.WXS.T C3L-03407 GBM WXS tumor CPT0190360007 CPT0190360007.WholeExome.RP-1303.bam 21798160503 BAM submitted_aligned CPTAC3 eb2ca344-1b8c-4932-b446-351a68535363 fb344b6e2971df33d74af5d73b2f8917 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03407.WXS.T.hg38 C3L-03407 GBM WXS tumor CPT0190360007 03da8212-cc53-424c-9b84-3669bd1e1d25_wxs_gdc_realn.bam 29549043644 BAM harmonized CPTAC3 233d032c-a42b-4b9e-afc1-d750c4c05951 bd81419b2af6b3ad0b3ca864835feb72 {"aliquot_tag": "ALQ_87434208", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.MethArray.Green.A C3L-03462 LUAD Methylation_Array tissue_normal CPT0190090007 203561620072_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 733b83ff-178c-4a74-893f-9977a57b1d61 3d6e3d51380faaf5bf34f129e40d6174 {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.MethArray.Green.T C3L-03462 LUAD Methylation_Array tumor CPT0190070006 203561620091_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3e662995-f6a2-4a41-967c-da468a1dde89 9bc75b87ba0e8e26ef12fab482ef2c1d {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.MethArray.Red.A C3L-03462 LUAD Methylation_Array tissue_normal CPT0190090007 203561620072_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 b2dc7774-97a8-4f2c-887d-fa4f319b086f 37e77e1dc52f7f46382076bfa63590ba {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.MethArray.Red.T C3L-03462 LUAD Methylation_Array tumor CPT0190070006 203561620091_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 ebe7d351-570e-4e4d-9753-3bf802e1389a c4b55fbd3c59194d1d40d7e209eef207 {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.miRNA-Seq.A.hg38 C3L-03462 LUAD miRNA-Seq tissue_normal CPT0190090010 9f5c34ab-2b13-421e-98b3-07e333e53ab4_mirnaseq_gdc_realn.bam 258738298 BAM harmonized CPTAC3 8e292fc5-3fdf-4fb4-9355-eb8f08c1764e 4ef615364b938ed272b41d7db56452de {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.miRNA-Seq.S15_L005_R1.T C3L-03462 LUAD miRNA-Seq tumor CPT0190070009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGAAA_S15_L005_R1_001.unaln.bam 218410953 BAM S15_L005_R1 submitted_unaligned CPTAC3 4ca8627b-a115-42dd-9458-717d9776214e 454d846a7ff92dfd7595c869fb779207 {"aliquot_tag": "ALQ_db0f3411", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.miRNA-Seq.S31_L007_R1.A C3L-03462 LUAD miRNA-Seq tissue_normal CPT0190090010 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTTGA_S31_L007_R1_001.unaln.bam 223935012 BAM S31_L007_R1 submitted_unaligned CPTAC3 6b3ca231-1e65-48e1-bc01-104e2df60a31 d56b376254c1ee3fbed6af842acef01f {"aliquot_tag": "ALQ_4f80395", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.miRNA-Seq.T.hg38 C3L-03462 LUAD miRNA-Seq tumor CPT0190070009 127a83eb-13c2-4660-9dbc-20e8fa5ebc26_mirnaseq_gdc_realn.bam 241571355 BAM harmonized CPTAC3 aba3eb5b-e695-4d29-8b54-a2ba660c5e4f 60b7428ecfe068b5374ec95becb13f81 {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.RNA-Seq.chimeric.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.chimeric.gdc_realn.bam 161126485 BAM chimeric harmonized CPTAC3 2eb5ee28-669a-4d9c-844d-7f729be2a206 32ef731824461993629aa76e9c2adcf2 {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.RNA-Seq.chimeric.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.chimeric.gdc_realn.bam 56184337 BAM chimeric harmonized CPTAC3 7cd9e87f-be28-46ee-975a-a4365d81a506 c33489deaf19e0278e74d73764f33e43 {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.RNA-Seq.genomic.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.genomic.gdc_realn.bam 14724923823 BAM genomic harmonized CPTAC3 51a65e2b-e28c-4716-afdd-b73c0ebbcc34 6ad72c211b25edc9c8fdd9ef399df6fc {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.RNA-Seq.genomic.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.genomic.gdc_realn.bam 14586256475 BAM genomic harmonized CPTAC3 a387addc-4689-485f-9c36-01432874cd9a 7b978837491da4e118d1c06dddfd32dc {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.RNA-Seq.S7_L002_R1.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R1_001.fastq.gz 5609424626 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 08f42aaf-e92e-4cdb-8cad-cf7ba704a416 8dcde62436f27099681c92cc70ba3902 {"aliquot_tag": "ALQ_4f80395", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.RNA-Seq.S7_L002_R2.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R2_001.fastq.gz 6122059962 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 a7e6797e-a229-4708-9d39-2b9a48c52c94 293a58593853853356cfe3445d561164 {"aliquot_tag": "ALQ_4f80395", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.RNA-Seq.S8_L002_R1.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R1_001.fastq.gz 4816010569 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 ea36bf78-e9fe-46b3-90a2-9d279423087b a4e9cd1cf06ad05585b287570c56a9e6 {"aliquot_tag": "ALQ_db0f3411", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.RNA-Seq.S8_L002_R2.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R2_001.fastq.gz 5406571725 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 b949d047-6693-4f02-b7e2-f60b42df43c7 b27320d24d77721bdab152d98162e029 {"aliquot_tag": "ALQ_db0f3411", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.RNA-Seq.transcriptome.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.transcriptome.gdc_realn.bam 11832418896 BAM transcriptome harmonized CPTAC3 f8cde06c-5114-4237-9bae-0218846b9faf f0fbba3f8ed896b37fbed853f16553e2 {"aliquot_tag": "ALQ_4f80395", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.RNA-Seq.transcriptome.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.transcriptome.gdc_realn.bam 11414858209 BAM transcriptome harmonized CPTAC3 c70cf8dd-f088-4e6f-8d71-b65ef323de7f d376b52d014681b9ef892cf29851f20b {"aliquot_tag": "ALQ_db0f3411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.WGS.N C3L-03462 LUAD WGS blood_normal CPT0191180002 CPT0191180002.WholeGenome.RP-1303.bam 57725226561 BAM submitted_aligned CPTAC3 f7466b8e-d54a-4846-a0a2-89cc219941ac 68d1c89d586dc086c0c5f44b576e3680 {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03462.WGS.N.hg38 C3L-03462 LUAD WGS blood_normal CPT0191180002 56b5fceb-9455-4d86-8bb0-42e3434f36bf_wgs_gdc_realn.bam 85245147296 BAM harmonized CPTAC3 0b99365a-116c-4b5c-ba4d-79ba135cbc28 0e7bde125b1f100511b51f993ba35ad8 {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03462.WGS.T C3L-03462 LUAD WGS tumor CPT0190070006 CPT0190070006.WholeGenome.RP-1303.bam 69800880244 BAM submitted_aligned CPTAC3 5a70f90d-0983-4704-8012-c7a74344167d 25e68bb7ef5a2b2c324a5892dca150c0 {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.WGS.T.hg38 C3L-03462 LUAD WGS tumor CPT0190070006 15678493-2489-4967-ad92-ec098fa647d5_wgs_gdc_realn.bam 104506273986 BAM harmonized CPTAC3 7077dd3c-e3d3-47ec-90f5-feeeedb1ad8a 2948918d5fed63903775657520981047 {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.WXS.A C3L-03462 LUAD WXS tissue_normal CPT0190090007 CPT0190090007.WholeExome.RP-1303.bam 19168102003 BAM submitted_aligned CPTAC3 d7a1b155-443b-4953-9778-0a2d88de705b 53c23884fdd1ec8e9a2033e1ea2bcfdb {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.WXS.A.hg38 C3L-03462 LUAD WXS tissue_normal CPT0190090007 c369743e-6b79-400a-80a9-14ed0ef12cb8_wxs_gdc_realn.bam 26462533475 BAM harmonized CPTAC3 050128a4-6dfe-4252-94dc-fb36a033a4b1 26f3c09d6740baf410ca1c735398e06f {"aliquot_tag": "ALQ_8387a777", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03462.WXS.N C3L-03462 LUAD WXS blood_normal CPT0191180002 CPT0191180002.WholeExome.RP-1303.bam 25387974024 BAM submitted_aligned CPTAC3 1ea2ee2d-b0b2-4414-919e-f31f5570b3b2 3409cd65e1ec57ea173873302953ae1b {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03462.WXS.N.hg38 C3L-03462 LUAD WXS blood_normal CPT0191180002 56b5fceb-9455-4d86-8bb0-42e3434f36bf_wxs_gdc_realn.bam 34866294039 BAM harmonized CPTAC3 ecc7cdc6-0632-4be3-b1a3-e70193029cda 9b7e9d5061b9ebe3b26bdee36f9c3d4b {"aliquot_tag": "ALQ_a3a6a259", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03462.WXS.T C3L-03462 LUAD WXS tumor CPT0190070006 CPT0190070006.WholeExome.RP-1303.bam 23638469331 BAM submitted_aligned CPTAC3 27a38e2d-d0d7-4e47-ad91-1e0d83e78890 79207aefc8b2a08eee67dad8de2906be {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03462.WXS.T.hg38 C3L-03462 LUAD WXS tumor CPT0190070006 15678493-2489-4967-ad92-ec098fa647d5_wxs_gdc_realn.bam 32871991841 BAM harmonized CPTAC3 b6ea39b9-3905-4a69-a15f-d53196972172 cf4baeddeedefeea408311297842291a {"aliquot_tag": "ALQ_4bb02980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.MethArray.Green.A C3L-03463 LUAD Methylation_Array tissue_normal CPT0190020006 203561620052_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 38ed4975-76ee-4483-bb30-deda0208fca3 257e077960739536d6cf3d358f9363aa {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.MethArray.Green.T C3L-03463 LUAD Methylation_Array tumor CPT0190010006 203561620095_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b9ca666e-0097-4d0b-97df-f14c695d9e58 26d6613d0b8a63f54facc0bfb68c4ff8 {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.MethArray.Red.A C3L-03463 LUAD Methylation_Array tissue_normal CPT0190020006 203561620052_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 bf2ec8a5-468a-44a5-9f1b-a06ac8a702ec c8a5acf7ad1e2d1d0a48235a7f0e3c3e {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.MethArray.Red.T C3L-03463 LUAD Methylation_Array tumor CPT0190010006 203561620095_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 53873af0-201a-4357-bcec-95ff3ff0066c 61b5a44279798188f52536e8f153e06c {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.miRNA-Seq.A.hg38 C3L-03463 LUAD miRNA-Seq tissue_normal CPT0190020009 d2000a12-cd1e-41e8-aba7-f02b0144e0e0_mirnaseq_gdc_realn.bam 291291644 BAM harmonized CPTAC3 307cf366-d5d2-4db6-b46b-a83e7019fd74 4b445f69f8bcedf32d095a3e8180963b {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.miRNA-Seq.S14_L005_R1.T C3L-03463 LUAD miRNA-Seq tumor CPT0190010009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTCCGC_S14_L005_R1_001.unaln.bam 185978130 BAM S14_L005_R1 submitted_unaligned CPTAC3 14b59328-100a-4ee4-8256-d50eb3d7c6a9 524799ab1484188cef9fc557faed750a {"aliquot_tag": "ALQ_544fc1b1", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.miRNA-Seq.S30_L007_R1.A C3L-03463 LUAD miRNA-Seq tissue_normal CPT0190020009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGATC_S30_L007_R1_001.unaln.bam 249283482 BAM S30_L007_R1 submitted_unaligned CPTAC3 9e7abc66-65e0-45b1-85fa-956d527ea02e f198100be2920053f56562f1d7c0a9f5 {"aliquot_tag": "ALQ_13efbb61", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.miRNA-Seq.T.hg38 C3L-03463 LUAD miRNA-Seq tumor CPT0190010009 6ece8972-033d-4694-9d03-91bd99b0532d_mirnaseq_gdc_realn.bam 207612206 BAM harmonized CPTAC3 6cd2eccb-37b1-469d-8b08-3c21754667e2 67dd92a60d951fa9b798001bd3949918 {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.RNA-Seq.chimeric.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.chimeric.gdc_realn.bam 117572107 BAM chimeric harmonized CPTAC3 526aa765-f156-44cc-833b-010314e044da 9830b86c8957411fcdae7e2b110e4ccb {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.RNA-Seq.chimeric.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.chimeric.gdc_realn.bam 33387159 BAM chimeric harmonized CPTAC3 24ebd95b-bc92-43f1-9e7c-e497d4bc3b64 67126d77ab489a2675b2266f403b0e4e {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.RNA-Seq.genomic.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.genomic.gdc_realn.bam 7627666417 BAM genomic harmonized CPTAC3 00357488-7ef6-471b-be2a-32cd1d9b5195 085fa3dcf7eb5a38477a63da7ef75b42 {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.RNA-Seq.genomic.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.genomic.gdc_realn.bam 15108527066 BAM genomic harmonized CPTAC3 462dfd62-3e26-4da8-a725-f11ed13c1af6 f3c249402991805dbf7a71ec4f657b35 {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.RNA-Seq.S22_L006_R1.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R1_001.fastq.gz 3014580074 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 3a1d08ac-7208-4ae2-a1bb-204516c40043 a05588a485a979afae3a732a18fcdf68 {"aliquot_tag": "ALQ_13efbb61", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.RNA-Seq.S22_L006_R2.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R2_001.fastq.gz 3197654267 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 a08b3171-0932-4601-b7d0-cbab3d9c8b41 82608727fd1cfa99bfceefe03a113b09 {"aliquot_tag": "ALQ_13efbb61", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.RNA-Seq.S6_L002_R1.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R1_001.fastq.gz 4344189479 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 8af7daf9-d63a-4c4d-b9f9-b298da23bcd5 97ee89eff24c8808aaf0c266987ed85a {"aliquot_tag": "ALQ_544fc1b1", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.RNA-Seq.S6_L002_R2.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R2_001.fastq.gz 5021960605 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 dadcbb2c-584f-4847-92a0-2bfa844266f2 a9a5c7232f05b424e71c93fbed089acd {"aliquot_tag": "ALQ_544fc1b1", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.RNA-Seq.transcriptome.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.transcriptome.gdc_realn.bam 6463037656 BAM transcriptome harmonized CPTAC3 733fe733-6a7a-4c98-b0a6-29ea599abbd9 518142e75ad850826aaa8c8a0885513a {"aliquot_tag": "ALQ_13efbb61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.RNA-Seq.transcriptome.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.transcriptome.gdc_realn.bam 10133494128 BAM transcriptome harmonized CPTAC3 3c2b36ac-21f6-41a6-89a7-a4addc5a1cac aa692708fab33a537791113d278002fc {"aliquot_tag": "ALQ_544fc1b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.WGS.N C3L-03463 LUAD WGS blood_normal CPT0191080002 CPT0191080002.WholeGenome.RP-1303.bam 58889584047 BAM submitted_aligned CPTAC3 b1f70092-d513-4a8c-9fac-4c32d7dd0b38 028d3afe0fd173109561021a4c80756e {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03463.WGS.N.hg38 C3L-03463 LUAD WGS blood_normal CPT0191080002 71c20dba-7e3c-48a7-bb01-34619832fddd_wgs_gdc_realn.bam 86909473238 BAM harmonized CPTAC3 1f0133de-83c3-4f1a-9759-9f2a4ca3ded1 9499d8ef40e13fda7b44956d94d1fa17 {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03463.WGS.T C3L-03463 LUAD WGS tumor CPT0190010006 CPT0190010006.WholeGenome.RP-1303.bam 55074996383 BAM submitted_aligned CPTAC3 1189a10c-71c9-4540-87e6-d33671e38849 1e7a6f77b16c06bcc81d5d75b31cfb2e {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.WGS.T.hg38 C3L-03463 LUAD WGS tumor CPT0190010006 de661d12-3540-4513-ab51-8a8eacc33f03_wgs_gdc_realn.bam 80340748716 BAM harmonized CPTAC3 f75753f6-336d-4dda-aca5-42a7a45f4cb0 ab388f31ea2f2e649a567130045501c8 {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.WXS.A C3L-03463 LUAD WXS tissue_normal CPT0190020006 CPT0190020006.WholeExome.RP-1303.bam 21534843357 BAM submitted_aligned CPTAC3 c756b128-cb43-41cb-9bb3-3ee0d8d6e4c2 e9f11e67b60527c7df56945fb4115d48 {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.WXS.A.hg38 C3L-03463 LUAD WXS tissue_normal CPT0190020006 5c77d974-0150-4d5c-8a5d-88f7ed28c788_wxs_gdc_realn.bam 29792777351 BAM harmonized CPTAC3 6c8b2548-0255-4413-aff6-769edc65dc64 0c31c0a0e2274a0781861bbcf2a945ad {"aliquot_tag": "ALQ_8350a6f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03463.WXS.N C3L-03463 LUAD WXS blood_normal CPT0191080002 CPT0191080002.WholeExome.RP-1303.bam 26497080936 BAM submitted_aligned CPTAC3 e069868e-382a-4c13-9833-60b9efa1eeeb 593f7cba2faffd0b153c520bb3ffb7c6 {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03463.WXS.N.hg38 C3L-03463 LUAD WXS blood_normal CPT0191080002 71c20dba-7e3c-48a7-bb01-34619832fddd_wxs_gdc_realn.bam 36683316726 BAM harmonized CPTAC3 671f8fd0-8de5-45e8-889f-480694a1eb6a bbb083a9f99aeb5ad86304af3c0fe1bd {"aliquot_tag": "ALQ_68fa71fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03463.WXS.T C3L-03463 LUAD WXS tumor CPT0190010006 CPT0190010006.WholeExome.RP-1303.bam 23111168509 BAM submitted_aligned CPTAC3 f837cd7f-f0bb-43c6-8ba7-37b1dcfdf4bf 0cfd9d31748a66ff492a34d2ec0a518e {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03463.WXS.T.hg38 C3L-03463 LUAD WXS tumor CPT0190010006 de661d12-3540-4513-ab51-8a8eacc33f03_wxs_gdc_realn.bam 31711426007 BAM harmonized CPTAC3 ec373367-df0f-4ee9-9659-e46a271d8aa5 c18b686f74ec4cc4d589943a67d428dc {"aliquot_tag": "ALQ_c4f0dc20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03467.MethArray.Green.T C3L-03467 UCEC Methylation_Array tumor CPT0188610006 203561450099_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3f72bd38-3a50-4ad2-b75c-3aabfefb6477 0522a18cd677e61f9dc2309795116c8c {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.MethArray.Red.T C3L-03467 UCEC Methylation_Array tumor CPT0188610006 203561450099_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 f4f05099-b439-4a8d-b44d-44c1d086d04f 8d28f582bb3b8c399214ac2995dffe75 {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.miRNA-Seq.S28_L004_R1.T C3L-03467 UCEC miRNA-Seq tumor CPT0188610009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAAAAG_S28_L004_R1_001.unaln.bam 227494141 BAM S28_L004_R1 submitted_unaligned CPTAC3 416fd5a5-b3a3-4bac-b836-1da8497cbe94 03444859f8aff21379a523ab28ffebab {"aliquot_tag": "ALQ_7d536c55", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.miRNA-Seq.T.hg38 C3L-03467 UCEC miRNA-Seq tumor CPT0188610009 605d206a-e3f9-4f00-a89d-c9e865abf71e_mirnaseq_gdc_realn.bam 255767787 BAM harmonized CPTAC3 cd0adf42-ee65-463f-bb37-e43ef891e69c 5eb5aeb688686932b62bcc4e49391169 {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.chimeric.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.chimeric.gdc_realn.bam 35349095 BAM chimeric harmonized CPTAC3 b1c2081e-bf41-431b-a030-aa421f9483ce 806591c6fa2397eb4d3abed597e252ac {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.chimeric.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.chimeric.gdc_realn.bam 223393706 BAM chimeric harmonized CPTAC3 9ee0d27b-cfc6-41d9-bf50-9efcacb9d498 3dfb0860da34cf47422a2760043d0707 {"aliquot_tag": "ALQ_570c2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.genomic.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.genomic.gdc_realn.bam 8262495919 BAM genomic harmonized CPTAC3 ea61c716-3486-4179-9d32-4945dc4abf29 f59080570022d1b749e9998987f104d2 {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.genomic.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.genomic.gdc_realn.bam 8351470314 BAM genomic harmonized CPTAC3 b5e2f273-8de0-409d-a6ab-6277b526ad35 428a331d5e9ee08bc5e324368e9d6868 {"aliquot_tag": "ALQ_570c2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.S16_L004_R1.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R1_001.fastq.gz 3894724405 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 400fefc2-8e91-4953-b8e0-d1bdcf30252b c4a64b89e6ea62379158367240fb778e {"aliquot_tag": "ALQ_7d536c55", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.S16_L004_R2.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R2_001.fastq.gz 4436200395 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 30c268b4-b8d7-463a-8ec2-4f70a9d6eca4 c2cc34260905972bc3f39021a7aad018 {"aliquot_tag": "ALQ_7d536c55", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.S63_R1.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R1_001.fastq.gz 4912189381 FASTQ S63_R1 submitted_unaligned CPTAC3 e7b51a2e-57df-4ccd-bbcc-1dfeaf777b48 f4388c8c876ff2a4973a562905b101f6 {"aliquot_tag": "ALQ_570c2a6c", "sample": "S63", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.S63_R2.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R2_001.fastq.gz 5079463116 FASTQ S63_R2 submitted_unaligned CPTAC3 959367d0-4854-4701-b965-aa36f6e689ef 142c58469ecf8c25f3270deb5bb1feef {"aliquot_tag": "ALQ_570c2a6c", "sample": "S63", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.transcriptome.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.transcriptome.gdc_realn.bam 9596940236 BAM transcriptome harmonized CPTAC3 c97bf175-d3a3-4c5e-8e2d-3e356f258423 5e43aec113970eebf40c0f9f3e716704 {"aliquot_tag": "ALQ_7d536c55", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.RNA-Seq.transcriptome.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.transcriptome.gdc_realn.bam 3947678671 BAM transcriptome harmonized CPTAC3 a7d5fc48-76f2-4c31-9e56-056ee77c55c5 d5c81dd27938202fd1e1103927746687 {"aliquot_tag": "ALQ_570c2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.WGS.N C3L-03467 UCEC WGS blood_normal CPT0183190002 CPT0183190002.WholeGenome.RP-1303.bam 63428991227 BAM submitted_aligned CPTAC3 bcd793a1-0aab-4892-b2f1-1dc1ebb4938e 393c75247dabe8be79bd72f2734e9531 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03467.WGS.N.hg38 C3L-03467 UCEC WGS blood_normal CPT0183190002 71869d46-d631-4c9f-b9b6-a718ea06724b_wgs_gdc_realn.bam 94192937562 BAM harmonized CPTAC3 e3de90da-a5bc-4515-9d79-3f6cc188dffd 5d06e61506a6c76bbe3bc88407e028c3 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03467.WGS.T C3L-03467 UCEC WGS tumor CPT0188610006 CPT0188610006.WholeGenome.RP-1303.bam 73984772200 BAM submitted_aligned CPTAC3 baba5abc-2757-4c63-995b-26d14e441c18 a2945fadf8d7ff8c748b998458043cae {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.WGS.T.hg38 C3L-03467 UCEC WGS tumor CPT0188610006 2bd24eb4-3bd5-4de0-a870-9e3deb00b045_wgs_gdc_realn.bam 110950448360 BAM harmonized CPTAC3 6dbae026-e720-4d69-b088-32bdd1f26988 898b0835b671b09a20a8eb73b111e85a {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.WXS.N C3L-03467 UCEC WXS blood_normal CPT0183190002 CPT0183190002.WholeExome.RP-1303.bam 25545707125 BAM submitted_aligned CPTAC3 d34b21ef-973f-4ad1-adbf-23e95202ae86 e2c3ad8258ab52133cd2116abf9d0bd1 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03467.WXS.N.hg38 C3L-03467 UCEC WXS blood_normal CPT0183190002 71869d46-d631-4c9f-b9b6-a718ea06724b_wxs_gdc_realn.bam 34699611206 BAM harmonized CPTAC3 0392e112-504b-44ce-89da-b59b56c76388 32c4ea8775b8cbdd0a5f17e00f7d1fd7 {"aliquot_tag": "ALQ_c5f39a5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03467.WXS.T C3L-03467 UCEC WXS tumor CPT0188610006 CPT0188610006.WholeExome.RP-1303.bam 23879525177 BAM submitted_aligned CPTAC3 29d7a969-ccf4-4641-ae79-5f0693ce3136 47fa162b20738239da6e802ea57de8ab {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03467.WXS.T.hg38 C3L-03467 UCEC WXS tumor CPT0188610006 2bd24eb4-3bd5-4de0-a870-9e3deb00b045_wxs_gdc_realn.bam 32652612812 BAM harmonized CPTAC3 6e033d20-aa62-4b5c-b0b5-53c814dbfb97 ecd9168114f01a22e6294488e48da761 {"aliquot_tag": "ALQ_edec71c4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03491.MethArray.Green.Tbm C3L-03491 AML Methylation_Array tumor_bone_marrow CPT0201160002 203561450027_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b00d510f-2720-4380-9729-1220104da670 edae4b35bfd9a4d8006abc226a725fb6 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.MethArray.Red.Tbm C3L-03491 AML Methylation_Array tumor_bone_marrow CPT0201160002 203561450027_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 a883c10f-aed8-473c-bc80-2a7a6c31c47b 0e9050502ed655a1b439ced086f72b86 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.miRNA-Seq.S31_L002_R1.Tbm C3L-03491 AML miRNA-Seq tumor_bone_marrow CPT0201240002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACGAT_S31_L002_R1_001.unaln.bam 199409090 BAM S31_L002_R1 submitted_unaligned CPTAC3 eb72124c-12f7-4b86-baaa-4bcdd9b17b9c fa43751bc1ed6957fc2e8322add0ac45 {"aliquot_tag": "ALQ_c6001a18", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.miRNA-Seq.Tbm.hg38 C3L-03491 AML miRNA-Seq tumor_bone_marrow CPT0201240002 60c9fa49-457c-4d32-92a3-beadc022622d_mirnaseq_gdc_realn.bam 222877411 BAM harmonized CPTAC3 b3481da4-bb81-4a7f-adbc-a34ce42f7120 4200e90695a6e38cf211362e539c30d8 {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.RNA-Seq.chimeric.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.chimeric.gdc_realn.bam 35020710 BAM chimeric harmonized CPTAC3 8683b422-8132-47b1-8b52-2fb52b0d7803 4eaebb6a1c03914558bc7854c3c71e45 {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.RNA-Seq.genomic.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.genomic.gdc_realn.bam 9449164693 BAM genomic harmonized CPTAC3 03274a8d-2a28-42a6-9783-d523d0f9926a 38f94071c9aa961b888b545284492f98 {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.RNA-Seq.S3_L007_R1.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R1_001.fastq.gz 4655695385 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 b4ab375f-c8ff-4016-8999-bc1864a9cb8f 914d7a0684fa0ce73b11197eb558f6a6 {"aliquot_tag": "ALQ_c6001a18", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.RNA-Seq.S3_L007_R2.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R2_001.fastq.gz 4875951370 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 f8b0ee43-6b6c-44ed-af83-ad31191765a6 d1324202427d1d451e5b0bd4524c44c6 {"aliquot_tag": "ALQ_c6001a18", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.RNA-Seq.transcriptome.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.transcriptome.gdc_realn.bam 10040901775 BAM transcriptome harmonized CPTAC3 c03e8eba-4538-4385-a82a-96b685f318cb 98590e29a1e5e1b2e6dfdf317615380d {"aliquot_tag": "ALQ_c6001a18", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002_1 CPT0201260002_1.WholeGenome.RP-1303.bam 66764773211 BAM submitted_aligned CPTAC3 fe742c91-96a7-4183-9ee1-d8ddcad6430f f2623d88a46a9cfacbdaba2be0f947be {"aliquot_tag": "ALQ_c5c2e554", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002 CPT0201260002.WholeGenome.RP-1303.bam 28153730545 BAM submitted_aligned CPTAC3 1f5c76aa-379c-48ae-80ca-9096eab3a70b 893db18c95bc1edae49d9d03dd54d94c {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03491.WGS.Nbc.hg38 C3L-03491 AML WGS buccal_normal CPT0201260002_1 14d1a6aa-e85e-44de-932b-e4a270c8d1da_wgs_gdc_realn.bam 220987048218 BAM harmonized CPTAC3 0ae4c8c0-bc44-4cbe-a3c3-04f845701bfb 5edb48dd4f2104442f3461ca557b8459 {"aliquot_tag": "ALQ_c5c2e554", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-03491.WGS.Nbc.hg38 C3L-03491 AML WGS buccal_normal CPT0201260002 1ff3c330-46ce-47a5-b4d0-c54341f4f7a5_wgs_gdc_realn.bam 38834048412 BAM harmonized CPTAC3 5151bfab-e478-4666-a7d5-91cc71758983 7bc6ce6713b05d3a23f678caeede08ce {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03491.WGS.Tbm C3L-03491 AML WGS tumor_bone_marrow CPT0201160002 CPT0201160002.WholeGenome.RP-1303.bam 94166755555 BAM submitted_aligned CPTAC3 2678eb89-1dbf-4b9b-bd5d-88d8022848bf 82150d8e80f03d75e25baae7d763e7b5 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.WGS.Tbm.hg38 C3L-03491 AML WGS tumor_bone_marrow CPT0201160002 5b8efbc5-c97f-4232-8b67-88fb0a71d5df_wgs_gdc_realn.bam 139513334059 BAM harmonized CPTAC3 42b8cc51-9a6d-47ac-b02d-32d608a179cd ba581e635fced7d6ce9a16fa47ca4f1f {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.WXS.Nbc C3L-03491 AML WXS buccal_normal CPT0201260002 CPT0201260002.WholeExome.RP-1303.bam 28153730608 BAM submitted_aligned CPTAC3 1b86980a-8080-4bc1-a015-7fea91d42600 cf56174fabf75da17ec5e6c95feee32b {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03491.WXS.Nbc.hg38 C3L-03491 AML WXS buccal_normal CPT0201260002 1ff3c330-46ce-47a5-b4d0-c54341f4f7a5_wxs_gdc_realn.bam 38867907138 BAM harmonized CPTAC3 30f741cb-008a-44cd-9d8f-3a51ab85cb6b 81ac74a2404f8643204e0d81655173ac {"aliquot_tag": "ALQ_bcc04978", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03491.WXS.Tbm C3L-03491 AML WXS tumor_bone_marrow CPT0201160002 CPT0201160002.WholeExome.RP-1303.bam 26139289699 BAM submitted_aligned CPTAC3 a0c7b92a-ac1c-4058-9f91-e958befe25b6 662259a53bb11012f8c6004d7bf09244 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03491.WXS.Tbm.hg38 C3L-03491 AML WXS tumor_bone_marrow CPT0201160002 5b8efbc5-c97f-4232-8b67-88fb0a71d5df_wxs_gdc_realn.bam 36851485019 BAM harmonized CPTAC3 dc2ade4a-0f50-4fe1-8616-b77def9db25a 1b4352a4292436fec3272b0ffb97dbe3 {"aliquot_tag": "ALQ_3a543bd6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.MethArray.Green.Tbm C3L-03493 AML Methylation_Array tumor_bone_marrow CPT0201410002 203561450114_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 70996bc6-4d11-4403-a5ce-4e52022868bc f7180bfdcfb9f95b3eaee181da67877c {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.MethArray.Red.Tbm C3L-03493 AML Methylation_Array tumor_bone_marrow CPT0201410002 203561450114_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 400791ab-5298-462c-a709-fb2be174d675 e6f660fc96cb0e7d8fe981e78736f529 {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.miRNA-Seq.S32_L002_R1.Tbm C3L-03493 AML miRNA-Seq tumor_bone_marrow CPT0201490002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACTCA_S32_L002_R1_001.unaln.bam 224783467 BAM S32_L002_R1 submitted_unaligned CPTAC3 0f15ca4f-637f-478f-afe9-adc199c3a949 b927484d62dd8a649d5b640709c7a31f {"aliquot_tag": "ALQ_e8c93db4", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.miRNA-Seq.Tbm.hg38 C3L-03493 AML miRNA-Seq tumor_bone_marrow CPT0201490002 69f74ab6-b617-4442-a217-2ce8682abed0_mirnaseq_gdc_realn.bam 249112097 BAM harmonized CPTAC3 d14416c0-8926-4e92-b2bd-3325e03ee23b f1287e55048be91d5b14777e3f20f5e3 {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.RNA-Seq.chimeric.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.chimeric.gdc_realn.bam 27355043 BAM chimeric harmonized CPTAC3 1b4f566b-dc99-4f5c-80e3-97f893f309cd 6dcddb392d990bf37a3b3653d85d04b6 {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.RNA-Seq.genomic.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.genomic.gdc_realn.bam 13431887116 BAM genomic harmonized CPTAC3 97253c3c-0468-4c34-b4e6-e6b478aaca7f 6062ef20bc8cc33c21a2c3f32f8a313d {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.RNA-Seq.S4_L007_R1.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R1_001.fastq.gz 4136869861 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 4f44b8ed-24b0-4cd8-88d8-932b4d084bb7 0114b390b94b1789f8f11c44f67640e7 {"aliquot_tag": "ALQ_e8c93db4", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.RNA-Seq.S4_L007_R2.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R2_001.fastq.gz 4426720000 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 fdaee277-9884-48eb-94e4-08462dcac691 0984e2672b2188d17f182f57db30124a {"aliquot_tag": "ALQ_e8c93db4", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.RNA-Seq.transcriptome.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.transcriptome.gdc_realn.bam 8870801427 BAM transcriptome harmonized CPTAC3 98acafd8-8fcd-43c5-9a99-eabaf66159c1 e14831ca6fdd4fd06be715f46ba10cd5 {"aliquot_tag": "ALQ_e8c93db4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.WGS.Nbc C3L-03493 AML WGS buccal_normal CPT0201510002 CPT0201510002.WholeGenome.RP-1303.bam 80451513582 BAM submitted_aligned CPTAC3 bc0f930f-56b7-4f29-8602-6b73cf19abe3 d2603b6a461f4ba6df6716755bb7f8d9 {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03493.WGS.Nbc.hg38 C3L-03493 AML WGS buccal_normal CPT0201510002 7f96e108-e097-4c20-a1c9-685d67dd2a72_wgs_gdc_realn.bam 120593417529 BAM harmonized CPTAC3 a76f4c04-d156-48ae-a49e-59200fbe2315 9b1b7cbb980d061e2af610a669197449 {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03493.WGS.Tbm C3L-03493 AML WGS tumor_bone_marrow CPT0201410002 CPT0201410002.WholeGenome.RP-1303.bam 89642061229 BAM submitted_aligned CPTAC3 af3ecb23-5a09-4b3e-9f10-50f8805885a3 ce3148a5916a6f37271e09848959f41b {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.WGS.Tbm.hg38 C3L-03493 AML WGS tumor_bone_marrow CPT0201410002 3fc6dd30-324a-4763-a721-669f4a10a441_wgs_gdc_realn.bam 133601679285 BAM harmonized CPTAC3 690c7e00-d487-4d12-973f-7a0fa1e94eb4 b4c74ec0171ed4987baa6536d312a604 {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.WXS.Nbc C3L-03493 AML WXS buccal_normal CPT0201510002 CPT0201510002.WholeExome.RP-1303.bam 26442457792 BAM submitted_aligned CPTAC3 d19b916f-f174-4191-952b-182c574cc2e2 15bd0fefeb36409584d4259ba6eaa15b {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03493.WXS.Nbc.hg38 C3L-03493 AML WXS buccal_normal CPT0201510002 7f96e108-e097-4c20-a1c9-685d67dd2a72_wxs_gdc_realn.bam 36307756921 BAM harmonized CPTAC3 2b57bf62-bfa7-4f9f-a2f5-985fd8b85e32 667ab603bd0b692f560550c3c7942cb6 {"aliquot_tag": "ALQ_13e5a5d0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03493.WXS.Tbm C3L-03493 AML WXS tumor_bone_marrow CPT0201410002 CPT0201410002.WholeExome.RP-1303.bam 28804971476 BAM submitted_aligned CPTAC3 4c1b5bd4-206b-4ad3-9404-17dd4fb42110 7f8149d549b0d026f872b5abbb2a54ab {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03493.WXS.Tbm.hg38 C3L-03493 AML WXS tumor_bone_marrow CPT0201410002 3fc6dd30-324a-4763-a721-669f4a10a441_wxs_gdc_realn.bam 40080658399 BAM harmonized CPTAC3 7833029e-f8e7-4481-9b5d-46141e8ba4b1 51217ac09d4e6c2f68e55c7a14cde22a {"aliquot_tag": "ALQ_d8b97675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.MethArray.Green.Tbm C3L-03496 AML Methylation_Array tumor_bone_marrow CPT0230700002 203561620053_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a20ab297-ee1c-4f89-b426-5c4ebb0e65af f414d6f73c2f6b7a1d9c5dbf09dc1590 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.MethArray.Red.Tbm C3L-03496 AML Methylation_Array tumor_bone_marrow CPT0230700002 203561620053_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6bdef76b-ae7e-4c27-854b-1eb3d324be26 c4bf3cb2e2e4deba00eba1e3dcc55829 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.miRNA-Seq.S35_L002_R1.Tbm C3L-03496 AML miRNA-Seq tumor_bone_marrow CPT0230710002 190508_UNC31-K00269_0215_BH7FYKBBXY_CATTTT_S35_L002_R1_001.unaln.bam 210696724 BAM S35_L002_R1 submitted_unaligned CPTAC3 f25ce087-7ddb-48fb-a185-7f06b9a74d6d e8c81d4a98bd3d2f9d360dc456e61c50 {"aliquot_tag": "ALQ_76d5088c", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.miRNA-Seq.Tbm.hg38 C3L-03496 AML miRNA-Seq tumor_bone_marrow CPT0230710002 c14fdb09-b7f8-4192-b468-9747fabe7aeb_mirnaseq_gdc_realn.bam 230575342 BAM harmonized CPTAC3 11806f70-f8b5-4709-8233-3bf55b710986 bb99c8c5b1691aa38ed3de0b12c58f03 {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.RNA-Seq.chimeric.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.chimeric.gdc_realn.bam 31204449 BAM chimeric harmonized CPTAC3 18f59efc-3e0d-487e-993c-f9ccf615ada2 b601e10d110f1a9f72b328c83e1b15bf {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.RNA-Seq.genomic.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.genomic.gdc_realn.bam 8192672533 BAM genomic harmonized CPTAC3 15c9e787-8f22-4abe-bf78-f344a4ea4990 de3ba9a3fb0200f7e46b7bfc465d859e {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.RNA-Seq.S23_L008_R1.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R1_001.fastq.gz 4117117079 FASTQ S23_L008_R1 submitted_unaligned CPTAC3 1d6edd93-fa5c-4279-9c3e-4581c8ac3b98 b4a6ba41ecf10f4d50945c6715a83a9c {"aliquot_tag": "ALQ_76d5088c", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.RNA-Seq.S23_L008_R2.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R2_001.fastq.gz 4606872181 FASTQ S23_L008_R2 submitted_unaligned CPTAC3 8f3698ca-efbf-4bda-aa48-9f4a69f13208 300f44e68644b6162a97c5047f753b47 {"aliquot_tag": "ALQ_76d5088c", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.RNA-Seq.transcriptome.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.transcriptome.gdc_realn.bam 10971623951 BAM transcriptome harmonized CPTAC3 dead9860-6ddb-4690-973b-2d548561659a 1bcaa0366e8ec42d46678d83547654a1 {"aliquot_tag": "ALQ_76d5088c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.WGS.Nbc C3L-03496 AML WGS buccal_normal CPT0230800001 CPT0230800001.WholeGenome.RP-1303.bam 71770193050 BAM submitted_aligned CPTAC3 03c1b7de-490b-4ea9-a784-fda04b701045 108931836f86f32741f03d55875ff330 {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03496.WGS.Nbc.hg38 C3L-03496 AML WGS buccal_normal CPT0230800001 60e4af64-58be-46eb-a31d-33af26cc948f_wgs_gdc_realn.bam 106774664814 BAM harmonized CPTAC3 e28d6175-4ee7-497c-a49d-712b85f10815 b51f50ecb75e2da64bdb87acdd55e040 {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03496.WGS.Tbm C3L-03496 AML WGS tumor_bone_marrow CPT0230700002 CPT0230700002.WholeGenome.RP-1303.bam 56789681958 BAM submitted_aligned CPTAC3 1dec89be-07a5-406a-8e22-f3fcd995525f 9069fbd7160cf485fc4403a688f5ec0b {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.WGS.Tbm.hg38 C3L-03496 AML WGS tumor_bone_marrow CPT0230700002 2ecad3ef-5282-4924-92d2-1c1e205967d5_wgs_gdc_realn.bam 83950980290 BAM harmonized CPTAC3 3b7cb468-6327-4090-a75e-d332304d6a51 ffbc39f1228ed247686cb4b3bb289336 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.WXS.Nbc C3L-03496 AML WXS buccal_normal CPT0230800001 CPT0230800001.WholeExome.RP-1303.bam 27934910763 BAM submitted_aligned CPTAC3 098e5ea0-a328-49d2-8e1c-268963ba4b4f 52de285831d817f3a9448f6486cc84ec {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03496.WXS.Nbc.hg38 C3L-03496 AML WXS buccal_normal CPT0230800001 60e4af64-58be-46eb-a31d-33af26cc948f_wxs_gdc_realn.bam 38588245794 BAM harmonized CPTAC3 278c38d9-9ca8-4c92-80cc-936a7d8f85d0 858e83630a861b1391c01fc14cb88442 {"aliquot_tag": "ALQ_23eac253", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03496.WXS.Tbm C3L-03496 AML WXS tumor_bone_marrow CPT0230700002 CPT0230700002.WholeExome.RP-1303.bam 23549688964 BAM submitted_aligned CPTAC3 403c0eaa-af59-44df-9918-62a50b3bb667 36bb0f9e4cc2cbac4d46e25028e34fd2 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03496.WXS.Tbm.hg38 C3L-03496 AML WXS tumor_bone_marrow CPT0230700002 2ecad3ef-5282-4924-92d2-1c1e205967d5_wxs_gdc_realn.bam 33219150393 BAM harmonized CPTAC3 18b9610c-7a64-44f9-b3e8-1bfaf0febd8e a53664c388255d8d27e3fb894b1f1011 {"aliquot_tag": "ALQ_4bb5213c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.MethArray.Green.Tbm C3L-03497 AML Methylation_Array tumor_bone_marrow CPT0230630002 203561450054_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cfc21bc1-acd9-4690-a9a7-37bcc6f3c712 22fb6b91f2d8d63a5d1c92959e8a1ebb {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.MethArray.Red.Tbm C3L-03497 AML Methylation_Array tumor_bone_marrow CPT0230630002 203561450054_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 210aca49-9a20-4fe1-8918-d62e8bbee628 a60f5414b9d9b16241ceec72e754b41d {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.miRNA-Seq.S34_L002_R1.Tbm C3L-03497 AML miRNA-Seq tumor_bone_marrow CPT0230640002 190508_UNC31-K00269_0215_BH7FYKBBXY_CATGGC_S34_L002_R1_001.unaln.bam 189795844 BAM S34_L002_R1 submitted_unaligned CPTAC3 de354781-b2f8-47f2-9ba6-ec57bd73e5a1 9afcb49fa60b6e5c58a484375a591586 {"aliquot_tag": "ALQ_75695459", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.miRNA-Seq.Tbm.hg38 C3L-03497 AML miRNA-Seq tumor_bone_marrow CPT0230640002 f20277ed-877f-4d23-b017-682932ca90d9_mirnaseq_gdc_realn.bam 211905142 BAM harmonized CPTAC3 48ec0475-2d92-432a-8a7b-c38eb090f23f 7bbb2c44afd0b0cb255c5c8ba0036f5c {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.RNA-Seq.chimeric.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.chimeric.gdc_realn.bam 36687614 BAM chimeric harmonized CPTAC3 a1dc26a7-ab7f-45cd-a5a2-4d03368046f6 915fa2961973e1c81407077f77fd57fc {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.RNA-Seq.genomic.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.genomic.gdc_realn.bam 8669792161 BAM genomic harmonized CPTAC3 25cbe564-c0d4-4b30-80c4-ac867a4e3b14 4a02a5381a20ab2d0f84e67427c682de {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.RNA-Seq.S25_L008_R1.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R1_001.fastq.gz 4217899145 FASTQ S25_L008_R1 submitted_unaligned CPTAC3 be502fb7-05dd-4427-836c-f87cbd41f18b 32c931e29ce4d5c21f70519e72864d69 {"aliquot_tag": "ALQ_75695459", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.RNA-Seq.S25_L008_R2.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R2_001.fastq.gz 4855714135 FASTQ S25_L008_R2 submitted_unaligned CPTAC3 d452cd4c-f793-4b18-a675-b58f92cc384a 9572ca040fa95914d758e3655e8c1c66 {"aliquot_tag": "ALQ_75695459", "sample": "S25", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.RNA-Seq.transcriptome.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.transcriptome.gdc_realn.bam 11199735671 BAM transcriptome harmonized CPTAC3 2ad0618c-0359-45b7-9f49-9c0e1bf38805 433919fdf7c7bb3c04678f7d82b26c1d {"aliquot_tag": "ALQ_75695459", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001_1 CPT0230660001_1.WholeGenome.RP-1303.bam 72868517834 BAM submitted_aligned CPTAC3 b7827db7-eaab-4e5c-b7dd-fb5178cd7102 940deb66f8a342d1aa8db3183801796d {"aliquot_tag": "ALQ_bf82fab7", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001 CPT0230660001.WholeGenome.RP-1303.bam 26983389377 BAM submitted_aligned CPTAC3 8f24d99e-ba74-4890-b7b2-011ede0f7952 f0fae6f4f178bde896db458f13f03986 {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03497.WGS.Nbc.hg38 C3L-03497 AML WGS buccal_normal CPT0230660001_1 a087aaa3-7b60-4e27-991d-9b9d0464ffa5_wgs_gdc_realn.bam 104030462212 BAM harmonized CPTAC3 cba2d435-0d5a-4de9-a3ce-3bb906983089 4c06ea433b291d8b683bda5d70dd23a6 {"aliquot_tag": "ALQ_bf82fab7", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-03497.WGS.Nbc.hg38 C3L-03497 AML WGS buccal_normal CPT0230660001 bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wgs_gdc_realn.bam 37146848269 BAM harmonized CPTAC3 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 5ce3f9a6c8cc01a459fbe384adbaf118 {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03497.WGS.Tbm C3L-03497 AML WGS tumor_bone_marrow CPT0230630002 CPT0230630002.WholeGenome.RP-1303.bam 64905594415 BAM submitted_aligned CPTAC3 86c43df0-ed93-4f5e-b4fc-aa9b57102524 16c135744104f79a82ea8a38f165a2d4 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.WGS.Tbm.hg38 C3L-03497 AML WGS tumor_bone_marrow CPT0230630002 450e4b1c-4c7f-445e-91bb-880d0024fa02_wgs_gdc_realn.bam 96779530473 BAM harmonized CPTAC3 819a71b8-b34d-42de-9fff-e1c948a5ea18 7dadf9e76592abf1cb0b6392ec0968c0 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.WXS.Nbc C3L-03497 AML WXS buccal_normal CPT0230660001 CPT0230660001.WholeExome.RP-1303.bam 26983389438 BAM submitted_aligned CPTAC3 c02f56c2-13ee-4c11-8230-0db3ea6886cc 76ea2182fbc737790c084076f2f7debf {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03497.WXS.Nbc.hg38 C3L-03497 AML WXS buccal_normal CPT0230660001 bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wxs_gdc_realn.bam 37341337754 BAM harmonized CPTAC3 348a2f38-a72f-45bf-8a42-1e6ee6119a96 b07b28db79ce6800a7529b94de852ac1 {"aliquot_tag": "ALQ_96a05683", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03497.WXS.Tbm C3L-03497 AML WXS tumor_bone_marrow CPT0230630002 CPT0230630002.WholeExome.RP-1303.bam 31660225444 BAM submitted_aligned CPTAC3 ac914571-3786-439f-8e5f-44d698220470 fe803097fc6a703f503c2ad92d93c173 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03497.WXS.Tbm.hg38 C3L-03497 AML WXS tumor_bone_marrow CPT0230630002 450e4b1c-4c7f-445e-91bb-880d0024fa02_wxs_gdc_realn.bam 44535114934 BAM harmonized CPTAC3 a4ef610e-d021-431b-9e73-76fe7a7ae06a fc9be7309be29eeeb11cf64b2f3f0156 {"aliquot_tag": "ALQ_c7498849", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.MethArray.Green.Tbm C3L-03506 AML Methylation_Array tumor_bone_marrow CPT0280790002 205555390176_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 aabd3ac0-ae12-4a67-b380-506c8831af8e a62744997105789f2ae0f7305006ceb0 {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.MethArray.Red.Tbm C3L-03506 AML Methylation_Array tumor_bone_marrow CPT0280790002 205555390176_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 fbff295e-e609-4e28-9513-88a00d5ee37c 03082fb7cc339c043b09646e6d901f6f {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.miRNA-Seq.S11_L001_R1.Tbm C3L-03506 AML miRNA-Seq tumor_bone_marrow CPT0280800002 210702_UNC32-K00270_0289_AHKJ22BBXY_GATCAG_S11_L001_R1_001.unaln.bam 253032104 BAM S11_L001_R1 submitted_unaligned CPTAC3 c80562ce-107b-4929-b9c5-f11d7e4a8ec3 1cabbf5616f4d1ac4e5ba806e8098771 {"aliquot_tag": "ALQ_e7898fbf", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.miRNA-Seq.Tbm.hg38 C3L-03506 AML miRNA-Seq tumor_bone_marrow CPT0280800002 262734ff-71e2-4eab-8336-4779f1ed752b_mirnaseq_gdc_realn.bam 273375229 BAM harmonized CPTAC3 f5b76cfb-93bd-475d-8d06-c87a5700a677 2c771ffded21ef98d9c34fff7e9780b0 {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.RNA-Seq.chimeric.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.chimeric.gdc_realn.bam 131074510 BAM chimeric harmonized CPTAC3 af3b5702-35db-4063-bd18-cad60bd03e75 73f8dc926c6a3f12c595eae88e619cae {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.RNA-Seq.genomic.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.genomic.gdc_realn.bam 7383637041 BAM genomic harmonized CPTAC3 6300ebb4-db79-408f-964b-f08fc5686f42 04444474c7499cec48be670a229c8361 {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.RNA-Seq.S24_L006_R1.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R1_001.fastq.gz 3763741700 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 437768d4-042d-4ce3-976b-4661251774f4 4c29fb079f93601a555179845d9eb4b2 {"aliquot_tag": "ALQ_e7898fbf", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.RNA-Seq.S24_L006_R2.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R2_001.fastq.gz 3971268601 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 cfb053a9-a6a0-4a3f-8753-0a09b0a66327 20b192e3ab294b4ce5084ad50846e03b {"aliquot_tag": "ALQ_e7898fbf", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.RNA-Seq.transcriptome.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.transcriptome.gdc_realn.bam 10393790611 BAM transcriptome harmonized CPTAC3 eeb0d106-3cfc-439f-a8df-356dea6a32f0 334ec5cd32ff3f06573609b2aa7fa3ad {"aliquot_tag": "ALQ_e7898fbf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.WGS.Nbc C3L-03506 AML WGS buccal_normal CPT0280780001 CPT0280780001.WholeGenome.RP-2158.bam 62419406007 BAM submitted_aligned CPTAC3 cbee0556-0f3e-4294-a1c7-ce272d0fc3ac 09944c7bf4e3e89bafc5fea8b5a94cf5 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03506.WGS.Nbc.hg38 C3L-03506 AML WGS buccal_normal CPT0280780001 b955d449-4e11-4a49-9cf6-285624c143f8_wgs_gdc_realn.bam 196253332359 BAM harmonized CPTAC3 0e01c3e7-f302-4e40-84fa-39093f664511 2cfb1ab27042f5394b7d28c3af4fe668 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03506.WGS.Tbm C3L-03506 AML WGS tumor_bone_marrow CPT0280790002 CPT0280790002.WholeGenome.RP-2158.bam 49404623811 BAM submitted_aligned CPTAC3 5e942798-0eb0-463f-b3aa-f83d011c34a3 53d0c9e07c961c86445df230c8a3102e {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.WGS.Tbm.hg38 C3L-03506 AML WGS tumor_bone_marrow CPT0280790002 29bc2957-52fe-492b-a1d3-860e026feacb_wgs_gdc_realn.bam 149163033387 BAM harmonized CPTAC3 e588d3ea-e49d-436d-ba8d-3078d662beeb 0678240761b5592d560ed444a3f466de {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.WXS.Nbc C3L-03506 AML WXS buccal_normal CPT0280780001 CPT0280780001.WholeExome.RP-1303.bam 26364264392 BAM submitted_aligned CPTAC3 9bdcfdc5-8d05-4361-81d2-279d000706db 95ceaf077b548990dd4024d02c183966 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03506.WXS.Nbc.hg38 C3L-03506 AML WXS buccal_normal CPT0280780001 b955d449-4e11-4a49-9cf6-285624c143f8_wxs_gdc_realn.bam 36606170104 BAM harmonized CPTAC3 0ccedbbe-7557-439d-b112-1298da45dabf 1d0677f34a1273fbac13df9318c6dca8 {"aliquot_tag": "ALQ_bfa62711", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-03506.WXS.Tbm C3L-03506 AML WXS tumor_bone_marrow CPT0280790002 CPT0280790002.WholeExome.RP-1303.bam 32393423439 BAM submitted_aligned CPTAC3 a3034fb6-fab5-4b0a-b30b-672a77185fd9 f103aec523a654ebcad81a526789c862 {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03506.WXS.Tbm.hg38 C3L-03506 AML WXS tumor_bone_marrow CPT0280790002 29bc2957-52fe-492b-a1d3-860e026feacb_wxs_gdc_realn.bam 44202542671 BAM harmonized CPTAC3 c8ed37bf-da72-4f32-8064-7d5d9d6b578e b120629c8e6d5a0332c75a6fefedf346 {"aliquot_tag": "ALQ_1bcf5f1b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-03508.MethArray.Green.Tbm C3L-03508 AML Methylation_Array tumor_bone_marrow CPT0280680002 205549600082_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e816b317-19b2-4f1f-b48e-7c896ab609d6 ff86aa33e7ce35a0fb020b76b8e5673a {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.MethArray.Red.Tbm C3L-03508 AML Methylation_Array tumor_bone_marrow CPT0280680002 205549600082_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 54c61ebc-77e7-411c-b78c-b7313ee23581 51290a6c862edbeff2a3e86d833e44f9 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.miRNA-Seq.S2_L001_R1.Tbm C3L-03508 AML miRNA-Seq tumor_bone_marrow CPT0280690002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACTTGA_S2_L001_R1_001.unaln.bam 189912154 BAM S2_L001_R1 submitted_unaligned CPTAC3 78062f73-e0dc-4c95-b6c3-3844c978a9ec f726437a37b8489c409187b1868281c5 {"aliquot_tag": "ALQ_d0938cbe", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.miRNA-Seq.Tbm.hg38 C3L-03508 AML miRNA-Seq tumor_bone_marrow CPT0280690002 74d8a080-8de9-41c9-8356-71c7240e6e59_mirnaseq_gdc_realn.bam 207792050 BAM harmonized CPTAC3 dd646ab5-cedb-4969-865f-4d8cbbf56659 ff9d3c15136b963745172aad7dc60bd1 {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.RNA-Seq.chimeric.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.chimeric.gdc_realn.bam 105494203 BAM chimeric harmonized CPTAC3 1164921c-fecf-453a-b6c5-4d0b5e1d90c7 af12bb19d75e347b2fb9bc760cb9f291 {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.RNA-Seq.genomic.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.genomic.gdc_realn.bam 8279378392 BAM genomic harmonized CPTAC3 4b5d0dd8-e739-4608-8f36-59c955c71a4d e9c2987404b28747d93a95bdc9c388fc {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.RNA-Seq.S27_L007_R1.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R1_001.fastq.gz 4258717693 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 eff2fed0-50f2-463a-af08-4f7e2c407cd1 c245555a40c878fb70c5eb301afda274 {"aliquot_tag": "ALQ_d0938cbe", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.RNA-Seq.S27_L007_R2.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R2_001.fastq.gz 4482410886 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 9f0b5557-93f6-493d-a913-876087e28fcc 33c4111942f142a8f80e4c6ede7b55fc {"aliquot_tag": "ALQ_d0938cbe", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.RNA-Seq.transcriptome.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.transcriptome.gdc_realn.bam 9136732788 BAM transcriptome harmonized CPTAC3 465697cb-0a77-49d1-8cc7-a0395accfc11 84c7ae1f7a6207721cfdce1b43cc7cb7 {"aliquot_tag": "ALQ_d0938cbe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.WGS.Nbc C3L-03508 AML WGS buccal_normal CPT0280670001 CPT0280670001.WholeGenome.RP-2158.bam 50606862923 BAM submitted_aligned CPTAC3 aaf74e6b-8b70-4e13-8c58-ace5af973742 094a810e82077dacfc980869dd783892 {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03508.WGS.Nbc.hg38 C3L-03508 AML WGS buccal_normal CPT0280670001 bd67068d-c347-4456-9873-6215dcad3079_wgs_gdc_realn.bam 155897816745 BAM harmonized CPTAC3 931985c6-ced7-4c82-b2ef-ed40d574818f d15eb455d32134e3ee06903267226e5e {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03508.WGS.Tbm C3L-03508 AML WGS tumor_bone_marrow CPT0280680002 CPT0280680002.WholeGenome.RP-2158.bam 45997679356 BAM submitted_aligned CPTAC3 50e91da8-aaf6-4a1b-88d0-071e193c8f06 c9f19fc30ce7e0a7f8e20b5ddd996f91 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.WGS.Tbm.hg38 C3L-03508 AML WGS tumor_bone_marrow CPT0280680002 9b7446ea-aee1-41d6-b664-9e789f04c463_wgs_gdc_realn.bam 137496545054 BAM harmonized CPTAC3 eb2d66d8-1b52-4fa6-9732-902cab19da2b 0f1ed61f5a4bc37f0dfa452baa62e5e5 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.WXS.Nbc C3L-03508 AML WXS buccal_normal CPT0280670001 CPT0280670001.WholeExome.RP-1303.bam 27514868803 BAM submitted_aligned CPTAC3 7cacf811-a0a2-45a3-a381-e7b164027783 dd9d516ce528e8a321534d53cf94e570 {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03508.WXS.Nbc.hg38 C3L-03508 AML WXS buccal_normal CPT0280670001 bd67068d-c347-4456-9873-6215dcad3079_wxs_gdc_realn.bam 38543708143 BAM harmonized CPTAC3 4749abe5-0c59-4005-9b4b-56aab04fd2d2 715bbfbb5137a391b8f94f39b641c2d8 {"aliquot_tag": "ALQ_f6aa6365", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-03508.WXS.Tbm C3L-03508 AML WXS tumor_bone_marrow CPT0280680002 CPT0280680002.WholeExome.RP-1303.bam 19972493104 BAM submitted_aligned CPTAC3 b749c244-502c-441c-9624-8ab19e96f16a 429d35ada230f561489b72af27fff56d {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03508.WXS.Tbm.hg38 C3L-03508 AML WXS tumor_bone_marrow CPT0280680002 9b7446ea-aee1-41d6-b664-9e789f04c463_wxs_gdc_realn.bam 27759959188 BAM harmonized CPTAC3 34c0ba20-4cf2-4551-b896-7820e41613f5 6f0bafc535f18b3c3a9dbc1753286dc5 {"aliquot_tag": "ALQ_edf3a50e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-03510.MethArray.Green.Tbm C3L-03510 AML Methylation_Array tumor_bone_marrow CPT0410580002 205555380130_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 1e503c98-7021-46c1-91b1-d3ce8c60912d c558226aa6d99883b35ba22b42dd9ce2 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.MethArray.Red.Tbm C3L-03510 AML Methylation_Array tumor_bone_marrow CPT0410580002 205555380130_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 c6d84575-880a-474a-a886-a6d7cb463375 d8c351a1ab7a6cf8c4bb6a94545b4460 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.miRNA-Seq.S27_L005_R1.Tbm C3L-03510 AML miRNA-Seq tumor_bone_marrow CPT0410590002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACCGG_S27_L005_R1_001.unaln.bam 250763383 BAM S27_L005_R1 submitted_unaligned CPTAC3 bb30cd37-6579-4ae0-97a6-1c23e7f69898 b601f91af6452cee96f1c94f29eb980c {"aliquot_tag": "ALQ_3a529cb1", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.miRNA-Seq.Tbm.hg38 C3L-03510 AML miRNA-Seq tumor_bone_marrow CPT0410590002 bc256847-ffa5-41bc-8b2c-2ef54e8d2b29_mirnaseq_gdc_realn.bam 261306778 BAM harmonized CPTAC3 ce7c1316-c8f1-451c-847c-394df68dc1bb 43b3836445c5740eed45ba7cf36fd212 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.RNA-Seq.chimeric.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.chimeric.gdc_realn.bam 257437696 BAM chimeric harmonized CPTAC3 c332a6b3-d314-483b-b049-ac4c22fc8a2f 49a85d4ca2352f1a65bb3d96cf587ed7 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.RNA-Seq.genomic.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.genomic.gdc_realn.bam 9524510209 BAM genomic harmonized CPTAC3 46d62a30-5800-48f2-accf-1374573a2bb0 e58177a316bdc623e0f580d17d7ab7b8 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.RNA-Seq.S3_L001_R1.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R1_001.fastq.gz 4251229637 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 0d1b1ada-a377-4967-bf87-6f932737d579 f99de475a7956502806f30460fead33f {"aliquot_tag": "ALQ_3a529cb1", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.RNA-Seq.S3_L001_R2.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R2_001.fastq.gz 4582311192 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 7b51fead-61ec-46e0-a257-af0103cbda61 6675a1ad2f56ed23541626116b7013f9 {"aliquot_tag": "ALQ_3a529cb1", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.RNA-Seq.transcriptome.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.transcriptome.gdc_realn.bam 8910562315 BAM transcriptome harmonized CPTAC3 988efecf-8b9a-4f8b-9527-cbdac13c2df0 c2a19800bbaae48fdc505cc4c81ff0d7 {"aliquot_tag": "ALQ_3a529cb1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.WGS.Nbc C3L-03510 AML WGS buccal_normal CPT0410550001 CPT0410550001.WholeGenome.RP-2158.bam 52385796822 BAM submitted_aligned CPTAC3 95dc0f78-6155-409b-889f-763edd779ef7 4219709d8a88f8275c5bc8d7196dc962 {"aliquot_tag": "ALQ_66ab200a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03510.WGS.Nbc.hg38 C3L-03510 AML WGS buccal_normal CPT0410550001 ccf25dcd-3d07-4364-ba84-4d3ef2594ff5_wgs_gdc_realn.bam 150767993249 BAM harmonized CPTAC3 f800b205-92ba-4e0d-90bf-71788445fa57 2efc7b6cf1079ded120cd07aa502c336 {"aliquot_tag": "ALQ_66ab200a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-03510.WGS.Tbm C3L-03510 AML WGS tumor_bone_marrow CPT0410580002 CPT0410580002.WholeGenome.RP-2158.bam 63115965571 BAM submitted_aligned CPTAC3 50eb861f-b7e1-43d0-92ed-c20151f0538f d4689be58306f8a0ee0ed21c598d8178 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.WGS.Tbm.hg38 C3L-03510 AML WGS tumor_bone_marrow CPT0410580002 9e15dc83-7043-40b1-bd2e-718f0c9ba19c_wgs_gdc_realn.bam 174421184757 BAM harmonized CPTAC3 3d7fe562-8c05-48ae-988c-7be3aa2fdbe4 916283feb59ee0dcedbaf4f82943af2e {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.WXS.Tbm C3L-03510 AML WXS tumor_bone_marrow CPT0410580002 CPT0410580002.WholeExome.RP-1303.bam 23475577138 BAM submitted_aligned CPTAC3 33447cf0-2b3f-4a5b-aecc-f9bdff02835a 6691314114c0dc074c2b8efb904e7dc4 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-03510.WXS.Tbm.hg38 C3L-03510 AML WXS tumor_bone_marrow CPT0410580002 9e15dc83-7043-40b1-bd2e-718f0c9ba19c_wxs_gdc_realn.bam 32666170478 BAM harmonized CPTAC3 99bfee65-bdf3-4382-ab7b-f1168e6cd2a0 928a1920b019d6d740d2d7b1c6d67aa3 {"aliquot_tag": "ALQ_732b501", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-03513.RNA-Seq.chimeric.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.chimeric.gdc_realn.bam 204620638 BAM chimeric harmonized CPTAC3 337aa8cf-431a-4d63-b34e-60f2837778ee 1bc4a829573cd6e6a3566060b73c9194 {"aliquot_tag": "ALQ_29dd7f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03513.RNA-Seq.genomic.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.genomic.gdc_realn.bam 8451061261 BAM genomic harmonized CPTAC3 f9812395-0b8c-488d-9fa2-60581c850d4a 3ae30279f03a8b9ce431bc315d10fb74 {"aliquot_tag": "ALQ_29dd7f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03513.RNA-Seq.S6_L002_R1.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 4012444445 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 30c65fa6-6f8c-41cc-ae25-6089adc93750 472f5d53e2220e0541d3fd3aef11257f {"aliquot_tag": "ALQ_29dd7f9a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03513.RNA-Seq.S6_L002_R2.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4410946219 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 4f9e894b-8949-486f-ae58-ee15c1d111bf 054f5b8f4ebef2424a220403067010d8 {"aliquot_tag": "ALQ_29dd7f9a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03513.RNA-Seq.transcriptome.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.transcriptome.gdc_realn.bam 11357227996 BAM transcriptome harmonized CPTAC3 c5b8a7dd-7744-4753-bfd3-4aedaa3010eb 6c4057c92e39f607d0571b5911249c21 {"aliquot_tag": "ALQ_29dd7f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03589.MethArray.Green.T C3L-03589 UCEC Methylation_Array tumor CPT0188710006 203561450018_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 81868de6-a7e2-4065-912e-e60476cdaf03 be844a74fbcc9bb2f8d5016b0d3d15ca {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.MethArray.Red.T C3L-03589 UCEC Methylation_Array tumor CPT0188710006 203561450018_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 05539ace-57f4-48e9-9992-5e70cb27c15d f10b7834a4e90564c19c2956172fb08d {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.miRNA-Seq.S29_L004_R1.T C3L-03589 UCEC miRNA-Seq tumor CPT0188710009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAACTA_S29_L004_R1_001.unaln.bam 238475972 BAM S29_L004_R1 submitted_unaligned CPTAC3 547dd03e-764e-403b-850d-5ffde2ae0db2 da3b729d2256992e41d431b769712487 {"aliquot_tag": "ALQ_b60fbff0", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.miRNA-Seq.T.hg38 C3L-03589 UCEC miRNA-Seq tumor CPT0188710009 d953d58a-30ab-42d3-8402-e5d052d3db24_mirnaseq_gdc_realn.bam 271472573 BAM harmonized CPTAC3 756e7c3d-894e-43a5-800b-f335213db62d 0b80ef447889bd80d5ec9f8dcb3fff1f {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.chimeric.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.chimeric.gdc_realn.bam 32231247 BAM chimeric harmonized CPTAC3 d0e304d0-e78c-40b1-b629-e1c3a4a236b5 1a5559789c98f9a0860ffb678905c9a3 {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.chimeric.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.chimeric.gdc_realn.bam 182239680 BAM chimeric harmonized CPTAC3 94675456-c625-4722-9cda-5d99cfab529d 1c4de518fb13be8418d865c12ada818b {"aliquot_tag": "ALQ_8ff9f7d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.genomic.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.genomic.gdc_realn.bam 7291860631 BAM genomic harmonized CPTAC3 a9cc2207-d181-437b-924d-308904a94e86 53744d9f3ec2375d5cda9507f6e3b487 {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.genomic.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.genomic.gdc_realn.bam 10103885246 BAM genomic harmonized CPTAC3 a1bef494-3032-40e3-a6f9-4afc8995fdb1 73975a0a122fa1732cef1ea08f2176a0 {"aliquot_tag": "ALQ_8ff9f7d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.S20_R1.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R1_001.fastq.gz 6148540452 FASTQ S20_R1 submitted_unaligned CPTAC3 f0b6263d-b4a5-4ed0-b9b1-c04d25351671 37802e91cb4faa59706573cc739023ff {"aliquot_tag": "ALQ_8ff9f7d5", "sample": "S20", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.S20_R2.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R2_001.fastq.gz 6363547418 FASTQ S20_R2 submitted_unaligned CPTAC3 6b7bf9fa-71f8-4616-a99a-7d59170e22e1 72d74baf26d4ea789cc633bc13733393 {"aliquot_tag": "ALQ_8ff9f7d5", "sample": "S20", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.S9_L003_R1.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R1_001.fastq.gz 3472628912 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 e77f5f6a-e76c-48b6-90d8-51ce0c4b32ad d4ed53e3390b9e8cca2f2efcd3c7d712 {"aliquot_tag": "ALQ_b60fbff0", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.S9_L003_R2.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R2_001.fastq.gz 3956765576 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 a1215d7e-9536-4a14-8474-6a67c0014834 df652364fe37d24dde1bfa9e53848cba {"aliquot_tag": "ALQ_b60fbff0", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.transcriptome.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.transcriptome.gdc_realn.bam 11555709157 BAM transcriptome harmonized CPTAC3 24c24c8c-c0a5-48d1-a9f2-2eff45350135 fc4740b159112a2395f0d8e029b61ebe {"aliquot_tag": "ALQ_b60fbff0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.RNA-Seq.transcriptome.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.transcriptome.gdc_realn.bam 6546683301 BAM transcriptome harmonized CPTAC3 e25ba766-e609-4f91-ae61-48bdde8abbc5 3fd7ec77b4534a38dce2b9867276428f {"aliquot_tag": "ALQ_8ff9f7d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.WGS.N C3L-03589 UCEC WGS blood_normal CPT0188770002 CPT0188770002.WholeGenome.RP-1303.bam 78304610301 BAM submitted_aligned CPTAC3 a102817c-ea10-4e11-9b8a-7c22229e172d 35ddb8c4094ae5783b751c8e55f57c41 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03589.WGS.N.hg38 C3L-03589 UCEC WGS blood_normal CPT0188770002 68f8e0fd-5220-4628-9987-e4fbea57e9e9_wgs_gdc_realn.bam 115115636168 BAM harmonized CPTAC3 bd6b2826-154e-4b74-a395-7fadc4650c7c 039460289d7ce02661fc3e39d56e6537 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03589.WGS.T C3L-03589 UCEC WGS tumor CPT0188710006 CPT0188710006.WholeGenome.RP-1303.bam 68898683915 BAM submitted_aligned CPTAC3 e78e8c4e-6e66-49b2-ade3-ca3f13088a7c 18330a530cba891d9ea23073a7b48dab {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.WGS.T.hg38 C3L-03589 UCEC WGS tumor CPT0188710006 7683eac6-c2fe-47d2-969f-5d90ef340b6a_wgs_gdc_realn.bam 101121836398 BAM harmonized CPTAC3 558d49c6-bca4-415d-b337-421423306c9c 9d24e13851c4d8ad9d6a406e5d8816e6 {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.WXS.N C3L-03589 UCEC WXS blood_normal CPT0188770002 CPT0188770002.WholeExome.RP-1303.bam 23428337101 BAM submitted_aligned CPTAC3 bd706b2b-cd79-432c-9205-55249935a96a 235450b5080e76110ebd1eb83c146153 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03589.WXS.N.hg38 C3L-03589 UCEC WXS blood_normal CPT0188770002 68f8e0fd-5220-4628-9987-e4fbea57e9e9_wxs_gdc_realn.bam 32013242171 BAM harmonized CPTAC3 39e343ca-ccae-406e-b79e-46c1b13d585c c21650abd03dd37690be33dda1050ac8 {"aliquot_tag": "ALQ_ae9d93d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03589.WXS.T C3L-03589 UCEC WXS tumor CPT0188710006 CPT0188710006.WholeExome.RP-1303.bam 27977586785 BAM submitted_aligned CPTAC3 abdfdd89-5f4e-4ef0-8874-c6f2235de180 98cc2eb4542757d259770bfdf0d1e125 {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03589.WXS.T.hg38 C3L-03589 UCEC WXS tumor CPT0188710006 7683eac6-c2fe-47d2-969f-5d90ef340b6a_wxs_gdc_realn.bam 39643076597 BAM harmonized CPTAC3 c38f1f62-a3fb-4a49-a51b-8ff31ececee1 dab1be6c12660ccb4b3e9c8c18304bbb {"aliquot_tag": "ALQ_26b0a261", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03622.ANN_d2441ba6.RNA-Seq.chimeric.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.chimeric.gdc_realn.bam 283926344 BAM chimeric harmonized CPTAC3 c34261e7-ceff-4840-9b30-2fc964b959b9 9454faeaa45dd080ae4b3b4cd9aaf605 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.ANN_d2441ba6.RNA-Seq.genomic.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.genomic.gdc_realn.bam 9167614712 BAM genomic harmonized CPTAC3 9ee4bb9f-2131-4c62-b487-179328390da5 cc0c784cf7c300bab3ad8d9de532741e {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.ANN_d2441ba6.RNA-Seq.S13_L008_R1.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R1_001.fastq.gz 3685200138 FASTQ S13_L008_R1 submitted_unaligned CPTAC3 7edc8bc7-80fc-466d-bae6-ea92952dc276 12bf08494f7a147f1af2757ee04e6365 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.ANN_d2441ba6.RNA-Seq.S13_L008_R2.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R2_001.fastq.gz 4305534457 FASTQ S13_L008_R2 submitted_unaligned CPTAC3 71eca917-c9e4-4e30-b6c6-87ab271d4005 0fac15fd527557478eedf1ee97aec220 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.ANN_d2441ba6.RNA-Seq.transcriptome.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.transcriptome.gdc_realn.bam 10845433506 BAM transcriptome harmonized CPTAC3 efbf3955-8ce8-43e7-adf3-98c8b532a2c0 0b98a6c5445a23fde3ead842372bca15 {"aliquot_tag": "ANN_d2441ba6", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.DUP_223c8fd2.WXS.T C3L-03622 PDA WXS tumor CPT0198520030 CPT0198520030.WholeExome.RP-1303.bam 22234685604 BAM submitted_aligned CPTAC3 87220180-a56d-47d1-9c0f-f7d15f66e16b 429913105b9d95db2bad7cd0c73c7b09 {"aliquot_tag": "DUP_223c8fd2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.DUP_223c8fd2.WXS.T.hg38 C3L-03622 PDA WXS tumor CPT0198520030 29544829-4515-4a88-bb93-480bae55d8f6_wxs_gdc_realn.bam 31513261886 BAM harmonized CPTAC3 acc533f2-f879-437d-ad63-4da6676c5558 a3a792d58baba0ead763535e18b68725 {"aliquot_tag": "DUP_223c8fd2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.DUP_42fb0637.WXS.T C3L-03622 PDA WXS tumor CPT0198520029 CPT0198520029.WholeExome.RP-1303.bam 23496699177 BAM submitted_aligned CPTAC3 46b67bf0-1622-4e46-8e01-172a76610f1e 4d791ba16e4214dea5ed5f351284cd39 {"aliquot_tag": "DUP_42fb0637", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.DUP_42fb0637.WXS.T.hg38 C3L-03622 PDA WXS tumor CPT0198520029 5b43c222-57ad-42df-9c48-53a63de6b581_wxs_gdc_realn.bam 33347518669 BAM harmonized CPTAC3 5e95894a-5022-4570-92a5-2f8aac3ad1ef 6b02990e44077596b6aadf09697f34c0 {"aliquot_tag": "DUP_42fb0637", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03622.DUP_685f489d.WXS.N C3L-03622 PDA WXS blood_normal CPT0198540002 CPT0198540002.WholeExome.RP-1303.bam 22359814391 BAM submitted_aligned CPTAC3 af127d2a-5e90-45e7-a318-6f36ab349a7a 0a40fb40143393ed93b008ddf6380487 {"aliquot_tag": "DUP_685f489d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03622.DUP_685f489d.WXS.N.hg38 C3L-03622 PDA WXS blood_normal CPT0198540002 cd3f7361-0ff3-4ff3-8ee5-d457ccc01a3d_wxs_gdc_realn.bam 31304395230 BAM harmonized CPTAC3 606ae6c5-5352-4dd1-bbc2-f1c7f877a247 c2daa8c5bd972b5dd9f9d91b488e8d59 {"aliquot_tag": "DUP_685f489d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03624.DUP_5e7acee7.MethArray.Green.T C3L-03624 PDA Methylation_Array tumor CPT0198600023 203561450106_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 99917422-bc29-474e-ac63-c55f951c5f29 5d43b6e4dedee263cb4287afa4e7163e {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_5e7acee7.MethArray.Red.T C3L-03624 PDA Methylation_Array tumor CPT0198600023 203561450106_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 02c528e9-bcee-40cc-870c-4ce4860499f5 e384cf67f868ef89534a060eca8b45fb {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_5e7acee7.Targeted.T C3L-03624 PDA Targeted_Sequencing tumor CPT0198600023 CPT0198600023.CustomSelection.RP-1303.PDO-18786.bam 4687124645 BAM submitted_aligned CPTAC3 331dafe8-ebde-414e-aea9-606df4d52972 25d346e5784a4a1aa7d3ffe5f33cf552 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_5e7acee7.Targeted.T.hg38 C3L-03624 PDA Targeted_Sequencing tumor CPT0198600023 85ace2b1-5081-4afa-ac26-f14706330702_targetedsequencing_gdc_realn.bam 6634225429 BAM harmonized CPTAC3 4fb9a646-437c-4661-bc5b-6222f2f989b9 aa1cb91f4fb5ea1ccf76c4535e428aa1 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_5e7acee7.WGS.T C3L-03624 PDA WGS tumor CPT0198600023 CPT0198600023.WholeGenome.RP-1303.bam 67120752450 BAM submitted_aligned CPTAC3 fef74278-e5cb-4a58-8cef-f32095a53697 6be236b760b61393e9fa996523eb1407 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_5e7acee7.WGS.T.hg38 C3L-03624 PDA WGS tumor CPT0198600023 85ace2b1-5081-4afa-ac26-f14706330702_wgs_gdc_realn.bam 99277653748 BAM harmonized CPTAC3 08ad649a-c5a7-40bd-b557-8ce768c71258 cef4326e80ee70f78d83b95514ded7c8 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_5e7acee7.WXS.T C3L-03624 PDA WXS tumor CPT0198600023 CPT0198600023.WholeExome.RP-1303.bam 41660712690 BAM submitted_aligned CPTAC3 f9c7e8bb-2cdd-4adc-9d21-de3b24c850aa 79a0844548612a770e688e8612aa2e17 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_5e7acee7.WXS.T.hg38 C3L-03624 PDA WXS tumor CPT0198600023 85ace2b1-5081-4afa-ac26-f14706330702_wxs_gdc_realn.bam 58465454619 BAM harmonized CPTAC3 45881215-b482-43ca-b3b8-260ecd7c413e 00d7ebbc7647e175d0e3cc371973da64 {"aliquot_tag": "DUP_5e7acee7", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.MethArray.Green.T C3L-03624 PDA Methylation_Array tumor CPT0198600029 203561450054_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d3d57b07-2190-4139-8b13-5d0b898fc315 5ca344f85edf0bb111aa8bb930127282 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.MethArray.Red.T C3L-03624 PDA Methylation_Array tumor CPT0198600029 203561450054_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 1005c423-1b8a-4f80-8aff-73d534839915 1303ff3080de643fe0991f280151552a {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.Targeted.T C3L-03624 PDA Targeted_Sequencing tumor CPT0198600029 CPT0198600029.CustomSelection.RP-1303.PDO-18786.bam 4326516796 BAM submitted_aligned CPTAC3 39370a66-c702-4d2b-98a7-2a0037ab0f7c 931996938d6421c1494dc0451d57faa2 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.Targeted.T.hg38 C3L-03624 PDA Targeted_Sequencing tumor CPT0198600029 a4653823-73c2-46db-b7f2-6dca71812990_targetedsequencing_gdc_realn.bam 6223731837 BAM harmonized CPTAC3 997438ef-9f6a-4d62-9889-d7ffb920ce32 7e585d07b945658c90cd092639ca9d20 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.WGS.T C3L-03624 PDA WGS tumor CPT0198600029 CPT0198600029.WholeGenome.RP-1303.bam 66620372675 BAM submitted_aligned CPTAC3 89d44f2b-e26f-4147-ab32-443181a9188c 253c8492ee5d8fde2ea8ed1c44cc0197 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.WGS.T.hg38 C3L-03624 PDA WGS tumor CPT0198600029 a4653823-73c2-46db-b7f2-6dca71812990_wgs_gdc_realn.bam 96494702130 BAM harmonized CPTAC3 f8ec4827-e5a0-4521-821d-6a0833c31ae2 d9af7f3ac98f1c19f2f059508c8e7dc1 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.WXS.T C3L-03624 PDA WXS tumor CPT0198600029 CPT0198600029.WholeExome.RP-1303.bam 42976995465 BAM submitted_aligned CPTAC3 40f9adc9-29c0-485c-b99e-866f7e1cf4c6 18bb27b3df391e6e6556ad5de50f2dec {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.DUP_beaf27f9.WXS.T.hg38 C3L-03624 PDA WXS tumor CPT0198600029 a4653823-73c2-46db-b7f2-6dca71812990_wxs_gdc_realn.bam 60382152695 BAM harmonized CPTAC3 791d21fe-cffe-47fe-afef-ab032648cd52 2eaf095ef634b2ad9aa42b20e9271261 {"aliquot_tag": "DUP_beaf27f9", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03624.WGS.N C3L-03624 PDA WGS blood_normal CPT0198630002 CPT0198630002.WholeGenome.RP-1303.bam 65953852449 BAM submitted_aligned CPTAC3 7d95d29f-beb3-4647-98a7-b20861630aa9 d603c45cacb38948894e40036ca69417 {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03624.WGS.N.hg38 C3L-03624 PDA WGS blood_normal CPT0198630002 c96c0aee-5f31-409e-9188-8fcf3653cdc0_wgs_gdc_realn.bam 93560637257 BAM harmonized CPTAC3 6a5aad2a-8a56-4295-a636-a70eca9cefae a0949d97589fc9c5ad8fc31a23478510 {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03624.WXS.N C3L-03624 PDA WXS blood_normal CPT0198630002 CPT0198630002.WholeExome.RP-1303.bam 25023948333 BAM submitted_aligned CPTAC3 37dbda67-6616-42e2-a417-9ab8175856c7 abc799b4563ce92a4c0222986342df81 {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03624.WXS.N.hg38 C3L-03624 PDA WXS blood_normal CPT0198630002 c96c0aee-5f31-409e-9188-8fcf3653cdc0_wxs_gdc_realn.bam 33898148249 BAM harmonized CPTAC3 dbbaffe7-de40-4707-ac67-682934f2c5ca 8607275b484c3152010691c6d88dd5bd {"aliquot_tag": "ALQ_5cebe623", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03624.WXS.T C3L-03624 PDA WXS tumor CPT0198600025 CPT0198600025.WholeExome.RP-1303.bam 47310615021 BAM submitted_aligned CPTAC3 8f713792-8585-41da-be6c-91627cea748b f13dbd12d947dfdd776bb9594751dc4c {"aliquot_tag": "ALQ_b7196bd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.MethArray.Green.T C3L-03628 PDA Methylation_Array tumor CPT0198700008 203561450100_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1050e3e8-af97-4065-9865-1c7d9194918e 1ea94a02fc977c54a44cc7e783177ab8 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.MethArray.Red.T C3L-03628 PDA Methylation_Array tumor CPT0198700008 203561450100_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 30c5bb4e-e134-4c59-b92d-bb48f7d89e5e 4846ec8d806685e5a7688ea5534761d6 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.miRNA-Seq.S26_L005_R1.T C3L-03628 PDA miRNA-Seq tumor CPT0198700011 190712_UNC32-K00270_0192_BH7HL3BBXY_TTAGGC_S26_L005_R1_001.unaln.bam 216539200 BAM S26_L005_R1 submitted_unaligned CPTAC3 52dde65c-4875-4d54-b53f-eed554f095ae 4aa7533ea1de95d81d1867d046d29b97 {"aliquot_tag": "ALQ_50052fad", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.miRNA-Seq.T.hg38 C3L-03628 PDA miRNA-Seq tumor CPT0198700011 dc360683-4dda-4c0a-b235-0f9eea5d1112_mirnaseq_gdc_realn.bam 245874286 BAM harmonized CPTAC3 d43af213-0cf9-437d-95f1-db449cb1248f 90bb0fd0a3b5f0359ceebe7a66067b2f {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.RNA-Seq.chimeric.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.chimeric.gdc_realn.bam 34222759 BAM chimeric harmonized CPTAC3 bdb1246d-ef24-4859-bfa6-acb9155036fb 6f6e257840b3d02e7674c2cf0c11209f {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.RNA-Seq.genomic.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.genomic.gdc_realn.bam 8039999601 BAM genomic harmonized CPTAC3 29f9f1e1-1b3c-4316-9761-7bfa96a4a2a9 61c38f5527c849d4424b181c7220d72f {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.RNA-Seq.S16_L004_R1.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R1_001.fastq.gz 3560940102 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 59922327-2842-491b-ae57-c7bacc87c47c 757fe171bddf36d005faf2cf04017050 {"aliquot_tag": "ALQ_50052fad", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.RNA-Seq.S16_L004_R2.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R2_001.fastq.gz 4051349752 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 49d41fd0-4d39-428e-be37-3c7193bbee85 45168a75f5f9399f9a2d557909e3e524 {"aliquot_tag": "ALQ_50052fad", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.RNA-Seq.transcriptome.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.transcriptome.gdc_realn.bam 9799925371 BAM transcriptome harmonized CPTAC3 ecb509bc-1c47-4760-ba37-e2cb3435cfd1 07328f2adc8d0441fb90b1dc233df530 {"aliquot_tag": "ALQ_50052fad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.Targeted.T C3L-03628 PDA Targeted_Sequencing tumor CPT0198700008 CPT0198700008.CustomSelection.RP-1303.PDO-18786.bam 4631118603 BAM submitted_aligned CPTAC3 e0d3090c-6e82-4f5e-a38b-a3c3e2f82397 694c0c4d7d24efdd317ab50ed60fe421 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.Targeted.T.hg38 C3L-03628 PDA Targeted_Sequencing tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_targetedsequencing_gdc_realn.bam 6434773505 BAM harmonized CPTAC3 b4691887-13d5-4843-a29f-44976d9e3c38 8a3d01b372b4dfe142d13f515a9a1eaf {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.WGS.N C3L-03628 PDA WGS blood_normal CPT0198740002 CPT0198740002.WholeGenome.RP-1303.bam 61673342664 BAM submitted_aligned CPTAC3 6d053580-4392-4097-bfdf-78ca3fffa957 53a5cd8d952602dea692192331812b01 {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03628.WGS.N.hg38 C3L-03628 PDA WGS blood_normal CPT0198740002 eb7b05e5-5bdf-4428-86dc-c3db5026f54d_wgs_gdc_realn.bam 88929799208 BAM harmonized CPTAC3 b6ebc683-52f5-4d6b-851b-6b11d8e9130c d07295c3873de35cd3fa1cde2e2eb955 {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03628.WGS.T C3L-03628 PDA WGS tumor CPT0198700008 CPT0198700008.WholeGenome.RP-1303.bam 69719962950 BAM submitted_aligned CPTAC3 3f1aa075-8709-43c0-a4ce-ca69ac2ac54e 12350670bfedb56dd31c988f7e4a3dbe {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.WGS.T.hg38 C3L-03628 PDA WGS tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_wgs_gdc_realn.bam 101553151265 BAM harmonized CPTAC3 26381947-e749-47bb-a186-99fa4323ebf9 0d631fd39e05f24b93cd35c89774b65c {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.WXS.N C3L-03628 PDA WXS blood_normal CPT0198740002 CPT0198740002.WholeExome.RP-1303.bam 28568408196 BAM submitted_aligned CPTAC3 8424fece-edbe-4d06-8493-b561efd6479e 981fadd3d88f3e8456180785c116a8df {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03628.WXS.N.hg38 C3L-03628 PDA WXS blood_normal CPT0198740002 eb7b05e5-5bdf-4428-86dc-c3db5026f54d_wxs_gdc_realn.bam 39365199085 BAM harmonized CPTAC3 dd82c39e-22e0-46eb-a844-2fe349b189ca 28322c6619a38f31234cf3ad63f599ef {"aliquot_tag": "ALQ_2597e996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03628.WXS.T C3L-03628 PDA WXS tumor CPT0198700008 CPT0198700008.WholeExome.RP-1303.bam 52288761525 BAM submitted_aligned CPTAC3 6e2d92da-2d9c-4634-b2da-e04534bd2fcc 2ae31f884c27ecd80f58132fda566f32 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03628.WXS.T.hg38 C3L-03628 PDA WXS tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_wxs_gdc_realn.bam 72532663191 BAM harmonized CPTAC3 d40063dc-8e93-4938-8ebc-29e56169bb36 1e7d22e2b97179eff14dd4aeb25facb8 {"aliquot_tag": "ALQ_30c2a648", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.ANN_d902e6dc.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.chimeric.gdc_realn.bam 226394775 BAM chimeric harmonized CPTAC3 ea472771-ef4a-44aa-9a1f-eba227d1da9d 1bb5cc004e8b5739ccdd8f85b4d774e6 {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.ANN_d902e6dc.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.genomic.gdc_realn.bam 10359816613 BAM genomic harmonized CPTAC3 bf115cea-55a3-4054-a7e5-77a301919c38 7b165d45b52da1db9d82e8a3effa5f79 {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.ANN_d902e6dc.RNA-Seq.S6_L006_R1.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R1_001.fastq.gz 3422136785 FASTQ S6_L006_R1 submitted_unaligned CPTAC3 7fecdbc1-0f98-4335-bf75-3036a9d9ab9e 22354d5ee834f218f1f2d5a1560218c7 {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.ANN_d902e6dc.RNA-Seq.S6_L006_R2.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R2_001.fastq.gz 3771090019 FASTQ S6_L006_R2 submitted_unaligned CPTAC3 74d67b6a-cbb9-458f-b5b6-c498e4e559fc 86a2a6f11f211ae31e3fc7921761788a {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.ANN_d902e6dc.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.transcriptome.gdc_realn.bam 8617873999 BAM transcriptome harmonized CPTAC3 8311c360-c9f6-40a1-8c75-46a038aef3cf 39fb484d7254e960f20ad0860a4ba1ae {"aliquot_tag": "ANN_d902e6dc", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_400bb766.WXS.T C3L-03629 PDA WXS tumor CPT0198810033 CPT0198810033.WholeExome.RP-1303.bam 20742950512 BAM submitted_aligned CPTAC3 22fe454d-fd90-4bf3-9ba5-084c3ce0b50b 18d2457995514a0df3034ab2b68b7a63 {"aliquot_tag": "DUP_400bb766", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_400bb766.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810033 4c5320d3-3d57-4115-8865-3cb140cb3815_wxs_gdc_realn.bam 28904578878 BAM harmonized CPTAC3 d0bfb95d-1cd4-454f-846a-343eeece9886 aa8454f338902ecbc3c33f3e7adfbe2b {"aliquot_tag": "DUP_400bb766", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_9643701b.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.chimeric.gdc_realn.bam 267510241 BAM chimeric harmonized CPTAC3 0b28579a-259f-445a-8c32-73cbdc194df8 a371010a56aa536868271736f4f48974 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_9643701b.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.genomic.gdc_realn.bam 6397383970 BAM genomic harmonized CPTAC3 1e5c9ae3-c57b-4dfd-b51d-9ed74d5dc5a4 29d76b677a203d60b24a3f6fd1aeee12 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_9643701b.RNA-Seq.S7_L002_R1.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 2898312783 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 7a35a568-320b-451a-b23f-8c0d181afcf8 0bebbffcc25a0239f140efe58b5cdd39 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_9643701b.RNA-Seq.S7_L002_R2.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3193547096 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 d5b5a4fd-2c7a-4551-9591-dab55b93cd47 22aca1b1cd2aa61f9f82934f1f2ec1c4 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_9643701b.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.transcriptome.gdc_realn.bam 7894499938 BAM transcriptome harmonized CPTAC3 cd925ca9-c6af-4003-aa38-71820abb9a17 06fe9ecd2f446a7af5dc4b4fe34954b4 {"aliquot_tag": "DUP_9643701b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_a9681253.WXS.T C3L-03629 PDA WXS tumor CPT0198810035 CPT0198810035.WholeExome.RP-1303.bam 40397390794 BAM submitted_aligned CPTAC3 673e93c0-f62c-435d-93f0-1e3647e70ffb c4e9056f291837fecfd11b4667ce991b {"aliquot_tag": "DUP_a9681253", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_a9681253.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810035 a10567d2-756b-4fdb-98d5-0c8cdc98e4cf_wxs_gdc_realn.bam 55328130665 BAM harmonized CPTAC3 6d1154ab-5a61-459a-adad-9a17b1be0c59 72f91289be265be886841f095520864f {"aliquot_tag": "DUP_a9681253", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_d4c15b43.WXS.N C3L-03629 PDA WXS blood_normal CPT0198840002 CPT0198840002.WholeExome.RP-1303.bam 30008291625 BAM submitted_aligned CPTAC3 c0414b4a-466c-4d46-b07e-1f6ac934e8d3 fa55c3d73e8b9bcec961c7b23bdc5995 {"aliquot_tag": "DUP_d4c15b43", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03629.DUP_d4c15b43.WXS.N.hg38 C3L-03629 PDA WXS blood_normal CPT0198840002 3047512c-6e80-43e9-abe6-23c303748fb5_wxs_gdc_realn.bam 41585212321 BAM harmonized CPTAC3 c28a3518-a775-405b-b8c9-759a677ea6d2 aa9602cf9886941b626e5d30f98199c2 {"aliquot_tag": "DUP_d4c15b43", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03629.DUP_de6f22c5.WXS.T C3L-03629 PDA WXS tumor CPT0198810034 CPT0198810034.WholeExome.RP-1303.bam 20584068641 BAM submitted_aligned CPTAC3 9f5b4209-578b-488b-b98e-1dced95e4f58 59e44665af92d0533b85e4a2fdf0c4d3 {"aliquot_tag": "DUP_de6f22c5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03629.DUP_de6f22c5.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810034 de5de03e-629e-44d0-ba43-3dd9a91e7bcd_wxs_gdc_realn.bam 28495895345 BAM harmonized CPTAC3 5a321292-b48b-4fee-8472-4ad443c8a748 cba2185967fe425944325f58986912e2 {"aliquot_tag": "DUP_de6f22c5", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.MethArray.Green.T C3L-03630 PDA Methylation_Array tumor CPT0198910008 203561450008_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d268937b-f28f-4bfe-bab5-dc3fe674d81a f4a71092e2cb3bff1a8d6e7231aaa53f {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.MethArray.Red.T C3L-03630 PDA Methylation_Array tumor CPT0198910008 203561450008_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 53dd3494-bb5c-45a2-b6d4-c5cf5938393c f639c9e7e929c680f34b569ddbdd43b1 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.miRNA-Seq.S28_L005_R1.T C3L-03630 PDA miRNA-Seq tumor CPT0198910011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACAGTG_S28_L005_R1_001.unaln.bam 201073157 BAM S28_L005_R1 submitted_unaligned CPTAC3 87eb915e-ce48-4726-b06f-df2635e2cd8c fa5d0ebba13efac7701b81ccbf3bcfb6 {"aliquot_tag": "ALQ_576f676d", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.miRNA-Seq.T.hg38 C3L-03630 PDA miRNA-Seq tumor CPT0198910011 8beb0d4d-1339-4e89-a6b4-bc35029379d2_mirnaseq_gdc_realn.bam 229419543 BAM harmonized CPTAC3 01acce44-2d0b-40d2-b51b-dbfbee6a2411 573ef022697faafb024ff4217c5f572d {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.RNA-Seq.chimeric.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.chimeric.gdc_realn.bam 34888806 BAM chimeric harmonized CPTAC3 eb50e8f2-d8bf-45af-bafd-a8704b774ab3 bd29a1267660cc56594144dfd3e37eeb {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.RNA-Seq.genomic.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.genomic.gdc_realn.bam 8589298090 BAM genomic harmonized CPTAC3 040abe19-b55d-4aae-a657-328890f61b7c d8722f4f7d53bedb62c7b0271ef1f938 {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.RNA-Seq.S30_L008_R1.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 4088071151 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 abf20b14-f42b-4ee3-9a92-47a0bb993abc 531fa079b9a489d46355fcf1de7759bd {"aliquot_tag": "ALQ_576f676d", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.RNA-Seq.S30_L008_R2.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4287119936 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 3f467916-1242-4b97-b826-b1d8ccf53dba 0bb5d253d6c7a5fcde08220bae0d1c69 {"aliquot_tag": "ALQ_576f676d", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.RNA-Seq.transcriptome.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.transcriptome.gdc_realn.bam 10889059802 BAM transcriptome harmonized CPTAC3 64e38c47-f372-4cc4-b2c7-13c74593f22a 9baa17a39170f06dd33dc94144d011ed {"aliquot_tag": "ALQ_576f676d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.Targeted.T C3L-03630 PDA Targeted_Sequencing tumor CPT0198910008 CPT0198910008.CustomSelection.RP-1303.PDO-18786.bam 6155756525 BAM submitted_aligned CPTAC3 8349c74a-a611-4a52-8657-5af5bb64bf69 93acb2bb8e91bdb177631d6ad7592abf {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.Targeted.T.hg38 C3L-03630 PDA Targeted_Sequencing tumor CPT0198910008 d2db9a6c-ad14-496e-accd-afcbf09093e7_targetedsequencing_gdc_realn.bam 8646899840 BAM harmonized CPTAC3 60989166-029d-4ec8-b306-85028e72fdf1 6855e440611dbe552e1c37513641cb76 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.WGS.N C3L-03630 PDA WGS blood_normal CPT0198940002 CPT0198940002.WholeGenome.RP-1303.bam 53821899243 BAM submitted_aligned CPTAC3 ef59fd3e-0d79-47cc-87a9-75e467296ea6 e2ff52fe77fe3b0b1a4a4c966af3b3b5 {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03630.WGS.N.hg38 C3L-03630 PDA WGS blood_normal CPT0198940002 7b5613c5-fbe2-4c47-8aba-ef678ce19f29_wgs_gdc_realn.bam 78103325100 BAM harmonized CPTAC3 e09ba3f3-2b40-48ba-bbd1-4ea6e8f45adb cc754e6175d5f9ec527eecd4fe9ecef9 {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03630.WGS.T C3L-03630 PDA WGS tumor CPT0198910008 CPT0198910008.WholeGenome.RP-1303.bam 52480834712 BAM submitted_aligned CPTAC3 9de9dbd9-96f6-42fb-b2ec-647411d7e263 e2b0744ef22940d1b01d915746db2246 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.WGS.T.hg38 C3L-03630 PDA WGS tumor CPT0198910008 d2db9a6c-ad14-496e-accd-afcbf09093e7_wgs_gdc_realn.bam 77549247919 BAM harmonized CPTAC3 11aa8479-d92d-46ef-a82c-65e972e8258d 3ef69644e92979cf471f9a53033f4410 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.WXS.N C3L-03630 PDA WXS blood_normal CPT0198940002 CPT0198940002.WholeExome.RP-1303.bam 27847988497 BAM submitted_aligned CPTAC3 69d2377a-f3ca-47a8-a3df-459c14653b20 edc399f4ed1b617b45d6dd70adb0e38e {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03630.WXS.N.hg38 C3L-03630 PDA WXS blood_normal CPT0198940002 7b5613c5-fbe2-4c47-8aba-ef678ce19f29_wxs_gdc_realn.bam 38405212628 BAM harmonized CPTAC3 a2750cc1-69d9-4ae7-bf41-39aa1bfb8969 ce0fec08d9c3b4b0774451dfa69a5575 {"aliquot_tag": "ALQ_1f9d88e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03630.WXS.T C3L-03630 PDA WXS tumor CPT0198910008 CPT0198910008.WholeExome.RP-1303.bam 56474632254 BAM submitted_aligned CPTAC3 e30c6370-35ac-49f8-96f4-c604a75e6a9c d083f2184283cd416c676ac4d5b5d07c {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03630.WXS.T.hg38 C3L-03630 PDA WXS tumor CPT0198910008 d2db9a6c-ad14-496e-accd-afcbf09093e7_wxs_gdc_realn.bam 77788058795 BAM harmonized CPTAC3 a0a78905-e4db-4663-9154-b0586565152f c391aec22eb5617f80eeb4039a4bf010 {"aliquot_tag": "ALQ_37a8ee88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.MethArray.Green.T C3L-03632 PDA Methylation_Array tumor CPT0238440008 203561620050_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c279f908-efd6-4a7b-8b5c-ab9dd49e2579 0708a25ff4aea3e91216ff46e09fe224 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.MethArray.Red.T C3L-03632 PDA Methylation_Array tumor CPT0238440008 203561620050_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 079c333e-4755-440f-88b4-5cd483ed3ab3 da7f2cf469485d2597230916bd37a096 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.miRNA-Seq.S167_L007_R1.T C3L-03632 PDA miRNA-Seq tumor CPT0238440011 190828_UNC32-K00270_0200_BH7GVJBBXY_GTCCGC_S167_L007_R1_001.unaln.bam 210746466 BAM S167_L007_R1 submitted_unaligned CPTAC3 c541191d-9f26-4513-bc60-21e898ae750c 6c0c2970e28789d0b5897161946f6938 {"aliquot_tag": "ALQ_8b5cdbce", "sample": "S167", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.miRNA-Seq.T.hg38 C3L-03632 PDA miRNA-Seq tumor CPT0238440011 34d10f3a-eb92-4533-b426-992e0f44d99a_mirnaseq_gdc_realn.bam 238164459 BAM harmonized CPTAC3 b6e98d86-45c6-48c0-ae10-02568713e6a9 748bed67ca2faeba96d86ed88c7dec6f {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.RNA-Seq.chimeric.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.chimeric.gdc_realn.bam 28361128 BAM chimeric harmonized CPTAC3 19392957-b05c-4b53-ab81-b6dcd3341387 dba5061f514081e38c188d469e790dc1 {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.RNA-Seq.genomic.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.genomic.gdc_realn.bam 7436410921 BAM genomic harmonized CPTAC3 d1ca9add-b4ba-4e6d-b78e-8362046466e7 765a4044b52ca804f505904c11ac0a6e {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.RNA-Seq.S17_L005_R1.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R1_001.fastq.gz 3348955246 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 c82f2b79-f7ea-4238-9d3a-fdbe0b526d34 490576e1864bda5da5c8b35d31c6e689 {"aliquot_tag": "ALQ_8b5cdbce", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.RNA-Seq.S17_L005_R2.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R2_001.fastq.gz 3784048246 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 ac072a22-6ff9-40e1-9fe1-d7902d8977fc 8dff9c98688864c5ae5be2e79afce97f {"aliquot_tag": "ALQ_8b5cdbce", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.RNA-Seq.transcriptome.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.transcriptome.gdc_realn.bam 9545303915 BAM transcriptome harmonized CPTAC3 4ca183cb-4c20-4760-ab68-6be4d0be959f 5aaa90fccd8f238572314ef80c516bd3 {"aliquot_tag": "ALQ_8b5cdbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.Targeted.T C3L-03632 PDA Targeted_Sequencing tumor CPT0238440008 CPT0238440008.CustomSelection.RP-1303.PDO-18786.bam 3995879921 BAM submitted_aligned CPTAC3 64e2304a-323c-454c-b5c7-957ac3c96813 46659096a8b5e9a2e6168c46bd5e7db9 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.Targeted.T.hg38 C3L-03632 PDA Targeted_Sequencing tumor CPT0238440008 559c33be-d2ec-459b-b8bf-29f57ef07918_targetedsequencing_gdc_realn.bam 5671566319 BAM harmonized CPTAC3 73c0d4eb-1059-4b52-b64a-7f0f45813e4f f590941a2ebcd78da07f133a3f8e32f0 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.WGS.N C3L-03632 PDA WGS blood_normal CPT0238470002 CPT0238470002.WholeGenome.RP-1303.bam 64592761951 BAM submitted_aligned CPTAC3 3ba0bafd-d795-464f-acf2-2952c94ab745 20de9d1d14259f9761be9c00a6e14781 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03632.WGS.N.hg38 C3L-03632 PDA WGS blood_normal CPT0238470002 9c99ac14-05ba-48ee-8df6-8f7adcae4db0_wgs_gdc_realn.bam 94168440249 BAM harmonized CPTAC3 a33a5a91-4ee5-4d6c-a371-0fe7678caadf f022dca8a1a102078fcf91e3fb03cb51 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03632.WGS.T C3L-03632 PDA WGS tumor CPT0238440008 CPT0238440008.WholeGenome.RP-1303.bam 58326498258 BAM submitted_aligned CPTAC3 ece19545-d8b7-45b1-bbb5-924617f85b6a 13ceb1cdc31f0061b5583c35a2ef198a {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.WGS.T.hg38 C3L-03632 PDA WGS tumor CPT0238440008 559c33be-d2ec-459b-b8bf-29f57ef07918_wgs_gdc_realn.bam 85751016769 BAM harmonized CPTAC3 846890f2-15c4-4071-9114-2d6fc5b8d20f 862812bd4c2807d4d450a7162cc2943d {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.WXS.N C3L-03632 PDA WXS blood_normal CPT0238470002 CPT0238470002.WholeExome.RP-1303.bam 27871062443 BAM submitted_aligned CPTAC3 74aa3941-4096-46ee-a388-e25e19881b4d 44bd72034771b2eea3239f5aa1c4de21 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03632.WXS.N.hg38 C3L-03632 PDA WXS blood_normal CPT0238470002 9c99ac14-05ba-48ee-8df6-8f7adcae4db0_wxs_gdc_realn.bam 38166130809 BAM harmonized CPTAC3 f8382823-e167-44ff-8de8-649171ef4768 e1d993660faafc64fbc6e64701bd9db8 {"aliquot_tag": "ALQ_4ceec1e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03632.WXS.T C3L-03632 PDA WXS tumor CPT0238440008 CPT0238440008.WholeExome.RP-1303.bam 60007733437 BAM submitted_aligned CPTAC3 82ef88de-1ab9-4955-a536-491c828d2903 bfce26a4d5155c2e6618ee870e015f56 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03632.WXS.T.hg38 C3L-03632 PDA WXS tumor CPT0238440008 559c33be-d2ec-459b-b8bf-29f57ef07918_wxs_gdc_realn.bam 83729218204 BAM harmonized CPTAC3 f5b93fdb-8fd8-4293-b736-fda3569bea85 47854cdc24b5504660bf4391fe9324f9 {"aliquot_tag": "ALQ_eb9b522b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.MethArray.Green.T C3L-03635 PDA Methylation_Array tumor CPT0238530008 203561620162_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 058dd7b1-7bfd-40de-9fc4-6c8bacd66ef6 4f9ceaa72f56c03423b9fabf434d537b {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.MethArray.Red.T C3L-03635 PDA Methylation_Array tumor CPT0238530008 203561620162_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 cf5ffca3-f18c-4e33-897c-876bba315f55 6186c6557afacf42bdc425cf2dd25d35 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.miRNA-Seq.S42_L005_R1.T C3L-03635 PDA miRNA-Seq tumor CPT0238530011 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGAAA_S42_L005_R1_001.unaln.bam 287711876 BAM S42_L005_R1 submitted_unaligned CPTAC3 357f25b0-bbc4-46e2-a22c-c58ded55fdf6 6bc77978f48d0c6f74fcb0394f274215 {"aliquot_tag": "ALQ_f220d47b", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.miRNA-Seq.T.hg38 C3L-03635 PDA miRNA-Seq tumor CPT0238530011 fab92cad-1800-418a-b6dd-24fc289ddd0b_mirnaseq_gdc_realn.bam 326293982 BAM harmonized CPTAC3 4f460bd7-5278-4b57-b395-7658f31cd5db 360d942b6b7906f33347ea620c13b9c7 {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.RNA-Seq.chimeric.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.chimeric.gdc_realn.bam 35098372 BAM chimeric harmonized CPTAC3 5290d988-76b8-440a-be30-e40d7d3f392b acf9fb3d57ba2a7fa8013c4d79f91e70 {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.RNA-Seq.genomic.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.genomic.gdc_realn.bam 8493598930 BAM genomic harmonized CPTAC3 a7855ced-4a1f-491c-b029-8b386f024022 457adcd4acafc895616ac0f721bfcedd {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.RNA-Seq.S20_L005_R1.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4130886211 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 e6d23182-aa4a-496e-b75f-2fec19d6bce0 ecd90d1e18773b32006bb2f2c19de4a5 {"aliquot_tag": "ALQ_f220d47b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.RNA-Seq.S20_L005_R2.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4451462225 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 02a17205-4f12-46b3-8ea5-fa2c1d3c5282 8c5edffebbb8912219524c4da8ebdbc7 {"aliquot_tag": "ALQ_f220d47b", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.RNA-Seq.transcriptome.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.transcriptome.gdc_realn.bam 11431800716 BAM transcriptome harmonized CPTAC3 8b8909db-7f4f-4ff1-83f9-c25888246f7b 9dffea1be82aef0855518a8dc8f595fb {"aliquot_tag": "ALQ_f220d47b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.Targeted.T C3L-03635 PDA Targeted_Sequencing tumor CPT0238530008 CPT0238530008.CustomSelection.RP-1303.PDO-18786.bam 4977296392 BAM submitted_aligned CPTAC3 9461fe2f-538f-428a-bc1b-7cd7ee3c272a 5491f66b8089e5bc12ecc445220ef3d0 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.Targeted.T.hg38 C3L-03635 PDA Targeted_Sequencing tumor CPT0238530008 0afced53-4194-44c8-b4f5-a37c910c50a9_targetedsequencing_gdc_realn.bam 7145861939 BAM harmonized CPTAC3 d402b214-6256-427b-a75e-19b15c11a661 22af1ed6f0a3fadc4350491f03435f36 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.WGS.N C3L-03635 PDA WGS blood_normal CPT0238560002 CPT0238560002.WholeGenome.RP-1303.bam 76018902811 BAM submitted_aligned CPTAC3 3d4db50f-6a46-481f-9e8f-5c85c6b08e09 24331b01b0a1deac124471dbe861d745 {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03635.WGS.N.hg38 C3L-03635 PDA WGS blood_normal CPT0238560002 93b38407-875a-49d9-b0ab-e68b0e9f61c2_wgs_gdc_realn.bam 110439477303 BAM harmonized CPTAC3 c4ac60b3-a112-4687-ad1e-8a155be5bfe1 adedf09ecdccfd23028295d57d804ebd {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03635.WGS.T C3L-03635 PDA WGS tumor CPT0238530008 CPT0238530008.WholeGenome.RP-1303.bam 66302432903 BAM submitted_aligned CPTAC3 f1a5a168-df1a-4a25-a7d5-7318fc7ac216 9891b6b62f403dda5ef9bee87c4dd204 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.WGS.T.hg38 C3L-03635 PDA WGS tumor CPT0238530008 0afced53-4194-44c8-b4f5-a37c910c50a9_wgs_gdc_realn.bam 97181064755 BAM harmonized CPTAC3 cca604ac-9620-4357-8de7-3f1f01e7aad7 12e4369f0d1db4204e56a388b57bb5a5 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.WXS.N C3L-03635 PDA WXS blood_normal CPT0238560002 CPT0238560002.WholeExome.RP-1303.bam 24648518961 BAM submitted_aligned CPTAC3 e318f49f-dd6a-4689-a979-a995f45aa1c8 3529af13c372807b7b428b15b0290162 {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03635.WXS.N.hg38 C3L-03635 PDA WXS blood_normal CPT0238560002 93b38407-875a-49d9-b0ab-e68b0e9f61c2_wxs_gdc_realn.bam 34135989139 BAM harmonized CPTAC3 2dfd2110-1402-4c6f-9f36-51129a20e857 84189ba3e84fd73fa503990a96505516 {"aliquot_tag": "ALQ_bad23bf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03635.WXS.T C3L-03635 PDA WXS tumor CPT0238530008 CPT0238530008.WholeExome.RP-1303.bam 73346661603 BAM submitted_aligned CPTAC3 9a2c7027-98cb-4cfa-9422-7ef4453d5510 4cdb11116d26fd5003676e59bf304199 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03635.WXS.T.hg38 C3L-03635 PDA WXS tumor CPT0238530008 0afced53-4194-44c8-b4f5-a37c910c50a9_wxs_gdc_realn.bam 103383883332 BAM harmonized CPTAC3 20541cf8-ecbf-4936-9eb8-fdc7728c9f4c 48c01737b082e833b3ab1d0bc6f20774 {"aliquot_tag": "ALQ_92e75d9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.MethArray.Green.T C3L-03639 PDA Methylation_Array tumor CPT0238610012 203561620049_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d2f36363-586e-4b76-9722-3041dd07d137 51c10142582438304e1c7fc1160068ed {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.MethArray.Red.T C3L-03639 PDA Methylation_Array tumor CPT0238610012 203561620049_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 06fcc68e-9f75-495b-9d62-884403aa00fc 19ace291c961ec94a7fc1ab37c4feae0 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.miRNA-Seq.S165_L008_R1.T C3L-03639 PDA miRNA-Seq tumor CPT0238610015 190828_UNC32-K00270_0200_BH7GVJBBXY_CTCAGA_S165_L008_R1_001.unaln.bam 242890877 BAM S165_L008_R1 submitted_unaligned CPTAC3 325f7a6c-da2e-4463-a075-ad5d5673eb66 c85f0f5b92e0c4777ca688a071ed460e {"aliquot_tag": "ALQ_91931ac", "sample": "S165", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.miRNA-Seq.T.hg38 C3L-03639 PDA miRNA-Seq tumor CPT0238610015 930b6301-6ef5-440a-ab17-2f9c77eedca5_mirnaseq_gdc_realn.bam 270090382 BAM harmonized CPTAC3 5b255f8b-1770-4098-8f51-d0bcbabfa6e7 e0a7bc74f393a2355ba9caa7172cceb2 {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.RNA-Seq.chimeric.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.chimeric.gdc_realn.bam 86745622 BAM chimeric harmonized CPTAC3 107da9a9-6d13-4c37-82e6-b513b85df502 918cb29a35566410f891b9c33506beff {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.RNA-Seq.genomic.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.genomic.gdc_realn.bam 10097807483 BAM genomic harmonized CPTAC3 85baebdd-8866-4c2f-8d7b-4c537bebe5cf c2a332c178ab2f1a2ef824f7309eab84 {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.RNA-Seq.S9_L003_R1.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R1_001.fastq.gz 4127318283 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 78529b12-483f-4a95-95b1-22a760125a08 4949d8c8ec6c0093ac2864fbb3692420 {"aliquot_tag": "ALQ_91931ac", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.RNA-Seq.S9_L003_R2.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R2_001.fastq.gz 4652080851 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 71867229-fafe-45c5-bc56-344e7c4c0a79 93d44fb9d79a14cb63b46a57c072228e {"aliquot_tag": "ALQ_91931ac", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.RNA-Seq.transcriptome.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.transcriptome.gdc_realn.bam 11345201832 BAM transcriptome harmonized CPTAC3 fe86ee18-dd0c-4afe-a178-162673b2097c d754194b927af8abb198dbfbc083ea84 {"aliquot_tag": "ALQ_91931ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.Targeted.T C3L-03639 PDA Targeted_Sequencing tumor CPT0238610012 CPT0238610012.CustomSelection.RP-1303.PDO-18786.bam 5120239206 BAM submitted_aligned CPTAC3 eabb6d66-77eb-4808-99f4-cf05f3b12734 0635bc8a0b8ce896c1bcfe72ac4226d5 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.Targeted.T.hg38 C3L-03639 PDA Targeted_Sequencing tumor CPT0238610012 18a2e2df-4b2a-4444-8a37-134b95717eba_targetedsequencing_gdc_realn.bam 7026319712 BAM harmonized CPTAC3 4dab60b5-2699-4e99-9e9f-d5615cbb1e1e 6deba3421bc5e171611a409013984723 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.WGS.N C3L-03639 PDA WGS blood_normal CPT0238650002 CPT0238650002.WholeGenome.RP-1303.bam 76629548908 BAM submitted_aligned CPTAC3 87217a5e-4619-4831-b9c8-fc968a768f52 bea01515a0c8cdf4cb301a266227a87a {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03639.WGS.N.hg38 C3L-03639 PDA WGS blood_normal CPT0238650002 7c35736c-19f3-4386-b030-bf10f883d72b_wgs_gdc_realn.bam 113622880967 BAM harmonized CPTAC3 1121034f-184d-4f0d-95bb-eed5db57ce05 135a989c51a1cb94705721f35c5b3dad {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03639.WGS.T C3L-03639 PDA WGS tumor CPT0238610012 CPT0238610012.WholeGenome.RP-1303.bam 70612859906 BAM submitted_aligned CPTAC3 49113e38-0b10-4152-8bbc-2fd7a5efdb25 89437ae65be8d2cacd9c9edb77a7224a {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.WGS.T.hg38 C3L-03639 PDA WGS tumor CPT0238610012 18a2e2df-4b2a-4444-8a37-134b95717eba_wgs_gdc_realn.bam 103689067042 BAM harmonized CPTAC3 594965a2-2fa4-40a2-b479-392b5e0a4355 3b546c4f540e8a41cce353a56e4c7827 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.WXS.N C3L-03639 PDA WXS blood_normal CPT0238650002 CPT0238650002.WholeExome.RP-1303.bam 26909053646 BAM submitted_aligned CPTAC3 9a07cbc6-45a8-40c4-acfa-d4d2a8bd37e6 fbbe89d17af1bd494475eb6653a5d092 {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03639.WXS.N.hg38 C3L-03639 PDA WXS blood_normal CPT0238650002 7c35736c-19f3-4386-b030-bf10f883d72b_wxs_gdc_realn.bam 36389282815 BAM harmonized CPTAC3 4bbdb4ea-2f95-447f-8b4d-b885e455be04 471d560711d690902dafbb2c4f94d752 {"aliquot_tag": "ALQ_7be6338e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03639.WXS.T C3L-03639 PDA WXS tumor CPT0238610012 CPT0238610012.WholeExome.RP-1303.bam 49733341063 BAM submitted_aligned CPTAC3 0dfec1a8-3983-4a9e-89a7-5afe2cdb8139 667334aa2a7598f3082ac5a44186d74f {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03639.WXS.T.hg38 C3L-03639 PDA WXS tumor CPT0238610012 18a2e2df-4b2a-4444-8a37-134b95717eba_wxs_gdc_realn.bam 69138382004 BAM harmonized CPTAC3 ed89ebd4-527a-45f0-9907-34c4dedb5497 1d0554ef58f6eb37262050b3567cf406 {"aliquot_tag": "ALQ_977da40f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.MethArray.Green.A C3L-03642 LUAD Methylation_Array tissue_normal CPT0216830006 203273630258_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 533f9704-5d66-49a7-bfd9-52754a6796ab 8c453d0d3904007f7fbd4423ffddf993 {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.MethArray.Green.T C3L-03642 LUAD Methylation_Array tumor CPT0216820006 203561620086_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f862c7b8-a38e-4646-9333-bf41ce752a56 10148ad609e47e3d648f4e2468c6db83 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.MethArray.Red.A C3L-03642 LUAD Methylation_Array tissue_normal CPT0216830006 203273630258_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 7d108a49-2c59-435c-9f10-a65750793ea7 0bdc47dedb7499bd81cbb83a0a75423a {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.MethArray.Red.T C3L-03642 LUAD Methylation_Array tumor CPT0216820006 203561620086_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 69bf7845-de5a-4081-8c2b-a5aec5f45317 69b330a7ccb5f96b6f4fb15701fdaaaf {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.miRNA-Seq.A.hg38 C3L-03642 LUAD miRNA-Seq tissue_normal CPT0216830009 9c530534-236d-4544-bc64-de7239afac87_mirnaseq_gdc_realn.bam 241718180 BAM harmonized CPTAC3 88fb3827-6ae0-44cd-ad7b-0d814c64b01c 5a027fa8687d543a8aa8bd34671a4e58 {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.miRNA-Seq.S39_L006_R1.A C3L-03642 LUAD miRNA-Seq tissue_normal CPT0216830009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGAAG_S39_L006_R1_001.unaln.bam 213263571 BAM S39_L006_R1 submitted_unaligned CPTAC3 09216ec8-603a-4d17-8677-8a473065d738 5665c8ed9701e875e74da71698e5d40f {"aliquot_tag": "ALQ_4b6402f6", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.miRNA-Seq.S7_L005_R1.T C3L-03642 LUAD miRNA-Seq tumor CPT0216820009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGCTAC_S7_L005_R1_001.unaln.bam 253320443 BAM S7_L005_R1 submitted_unaligned CPTAC3 e15fee5d-131b-459a-bf1d-e71bca132837 878cb20e22bec548e86d6115dd8d92a4 {"aliquot_tag": "ALQ_76042b46", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.miRNA-Seq.T.hg38 C3L-03642 LUAD miRNA-Seq tumor CPT0216820009 22d72ea6-dbe9-469a-8947-70ed5135854e_mirnaseq_gdc_realn.bam 275060230 BAM harmonized CPTAC3 d52644be-6e75-4422-9679-548cab39f617 abf58ea7feb7d87a773a60329f93150b {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.RNA-Seq.chimeric.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.chimeric.gdc_realn.bam 27377253 BAM chimeric harmonized CPTAC3 b139a9b2-c8b5-4188-a1c6-a1ee2063a83b 415ca164c850a8406dc2671b9f2efc4a {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.RNA-Seq.chimeric.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.chimeric.gdc_realn.bam 56304405 BAM chimeric harmonized CPTAC3 62f1ebe9-b4c0-454c-8c20-ac3af6a3ba6e 9e708b07705f01da873761b113e30da8 {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.RNA-Seq.genomic.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.genomic.gdc_realn.bam 15862343901 BAM genomic harmonized CPTAC3 c304f603-4ff0-4d5f-89da-8ab80ef485ef fea0d2c61e37f091eb60847f1320da48 {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.RNA-Seq.genomic.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.genomic.gdc_realn.bam 12611642563 BAM genomic harmonized CPTAC3 c3882db6-cdff-4d48-a42f-1124b17ef153 32b6be0d12e602421e47dc8f5afa1d83 {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.RNA-Seq.S13_L004_R1.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R1_001.fastq.gz 3991831524 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 1cde7d1e-d67c-4092-96d7-2690736c1919 7f082c97aeb00e212529de328560a970 {"aliquot_tag": "ALQ_76042b46", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.RNA-Seq.S13_L004_R2.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R2_001.fastq.gz 4544229711 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 8df56ec4-7e8a-4e44-904a-c2e5bc9a3584 638b6514d1af8c4c3195d00b85a4d50a {"aliquot_tag": "ALQ_76042b46", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.RNA-Seq.S4_L001_R1.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4642044745 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 56ddbe29-682c-4758-8a31-b0ee38465644 2d82b214a1ee85832238390ca84d10a5 {"aliquot_tag": "ALQ_4b6402f6", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.RNA-Seq.S4_L001_R2.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4919837227 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 9c736235-5c0e-4ee4-8f21-bf1969b5a99e 964004860f813ee9edad131068f95514 {"aliquot_tag": "ALQ_4b6402f6", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.RNA-Seq.transcriptome.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.transcriptome.gdc_realn.bam 9700307783 BAM transcriptome harmonized CPTAC3 42da128b-91f5-4f46-b036-31412254ef33 095537dc565ae33284138ecd58a73048 {"aliquot_tag": "ALQ_4b6402f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.RNA-Seq.transcriptome.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.transcriptome.gdc_realn.bam 9572301271 BAM transcriptome harmonized CPTAC3 e15a53a2-3bd0-42af-ad83-c9d4c62de216 73e9ff1f34aeeafbe52800cc084faf95 {"aliquot_tag": "ALQ_76042b46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.WGS.N C3L-03642 LUAD WGS blood_normal CPT0217680002 CPT0217680002.WholeGenome.RP-1303.bam 69402234421 BAM submitted_aligned CPTAC3 c81f46ca-0bec-46b9-b5d7-5d2a59966819 cb976f26df8d7f24fe3cbb60cbc2584e {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03642.WGS.N.hg38 C3L-03642 LUAD WGS blood_normal CPT0217680002 92c97b23-8846-4d06-b2b2-670f5bb378b7_wgs_gdc_realn.bam 101404143412 BAM harmonized CPTAC3 354b9f63-8a25-4d68-ac09-fd19d420622d 3c566e15784445d754e87818200d6fd6 {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03642.WGS.T C3L-03642 LUAD WGS tumor CPT0216820006 CPT0216820006.WholeGenome.RP-1303.bam 82848999991 BAM submitted_aligned CPTAC3 1f5957a3-87d1-4f52-8eb3-6ece5c1e7771 2ab221535501bc0a85a64e695495db87 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.WGS.T.hg38 C3L-03642 LUAD WGS tumor CPT0216820006 edea2be0-85ea-4fc2-956e-8dd70dc6286e_wgs_gdc_realn.bam 121087808075 BAM harmonized CPTAC3 b622dd0f-01de-4a90-8824-bfae022a3a60 a2f348c6e1cb2dee61dfb4251544b7f0 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.WXS.A C3L-03642 LUAD WXS tissue_normal CPT0216830006 CPT0216830006.WholeExome.RP-1303.bam 26429235411 BAM submitted_aligned CPTAC3 a0ad9913-2d75-4f11-874d-40042e715f53 5fda7ba8ff1cf8464f314ef30a296d4c {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.WXS.A.hg38 C3L-03642 LUAD WXS tissue_normal CPT0216830006 697da1aa-701c-49f2-9451-e8cbc149f95a_wxs_gdc_realn.bam 36370594682 BAM harmonized CPTAC3 da768d35-2441-40f1-8cca-7637109824d7 be1f3d22d00824a0fa2dca5dee7ff52d {"aliquot_tag": "ALQ_dbdb1f67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03642.WXS.N C3L-03642 LUAD WXS blood_normal CPT0217680002 CPT0217680002.WholeExome.RP-1303.bam 33523248414 BAM submitted_aligned CPTAC3 8497c3bc-4e47-4978-8826-03e7b03dd9bf ed9f3061fb864dcb9467b3f17898c321 {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03642.WXS.N.hg38 C3L-03642 LUAD WXS blood_normal CPT0217680002 92c97b23-8846-4d06-b2b2-670f5bb378b7_wxs_gdc_realn.bam 46293400276 BAM harmonized CPTAC3 3bcdcede-39d7-4bd6-987b-a9f617d485c3 cc03228e8871b88d857be3012ebdc63d {"aliquot_tag": "ALQ_371b80ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03642.WXS.T C3L-03642 LUAD WXS tumor CPT0216820006 CPT0216820006.WholeExome.RP-1303.bam 27164846497 BAM submitted_aligned CPTAC3 3b2fdc6a-afd9-4dca-b7eb-8a874f7fc6d9 7e6a550ba9b94344854e5116e430bc5f {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03642.WXS.T.hg38 C3L-03642 LUAD WXS tumor CPT0216820006 edea2be0-85ea-4fc2-956e-8dd70dc6286e_wxs_gdc_realn.bam 37302438794 BAM harmonized CPTAC3 fdc7b8a4-efdd-4e1a-be12-967295a2ed75 f516a6428e9e9b349d56ec1b0ce1d967 {"aliquot_tag": "ALQ_e6bb36d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.MethArray.Green.T C3L-03678 LSCC Methylation_Array tumor CPT0190550006 203219670150_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 34e8a14a-27da-40b3-8490-1d2f5f409310 39effa47f6b2e451625d0e5d7b054633 {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.MethArray.Red.T C3L-03678 LSCC Methylation_Array tumor CPT0190550006 203219670150_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e8f0e087-58c3-444e-b356-507e2f403760 493cb0e68e9733a5ef6cb878845934bb {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.miRNA-Seq.S37_L004_R1.T C3L-03678 LSCC miRNA-Seq tumor CPT0190550009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTAGCT_S37_L004_R1_001.unaln.bam 228734720 BAM S37_L004_R1 submitted_unaligned CPTAC3 220546fb-0208-4610-b389-b8dc523c1ef7 40fd1bad4428703b3e53cdf871739be4 {"aliquot_tag": "ALQ_f102f6c2", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.miRNA-Seq.T.hg38 C3L-03678 LSCC miRNA-Seq tumor CPT0190550009 e8b547fc-fdea-45f5-9396-ad4fc3d07f91_mirnaseq_gdc_realn.bam 253330764 BAM harmonized CPTAC3 18b0a311-e11e-4685-a264-ba0c40b62743 da21a2f3a96021c7b1e627e9356bbd0b {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.RNA-Seq.chimeric.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.chimeric.gdc_realn.bam 217081201 BAM chimeric harmonized CPTAC3 d9cba597-bd33-444a-9e7e-c8f7eab992f5 cf24e281f2d4ed653d035aa9ed80e008 {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.RNA-Seq.genomic.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.genomic.gdc_realn.bam 7756956740 BAM genomic harmonized CPTAC3 edfcf470-b66f-4de2-8518-4420df899547 3d0ee9a4e6c64e59303809be68bc1b9f {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.RNA-Seq.S11_L003_R1.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3357518606 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 2fdcf9b2-da83-4070-b39d-87e70b928eb6 a9abde223c0891efefd004cc0120ff38 {"aliquot_tag": "ALQ_f102f6c2", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.RNA-Seq.S11_L003_R2.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 3529872598 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 b44c7e5e-1df2-4a2b-8ef1-eb051e40af8e 8da475c9a79ed55f13cf33f3f1dd2238 {"aliquot_tag": "ALQ_f102f6c2", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.RNA-Seq.transcriptome.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.transcriptome.gdc_realn.bam 8613835147 BAM transcriptome harmonized CPTAC3 5f74a724-23e8-46c1-a3c9-3a7ddc511e2b 71ebc25f8b7fdad5ae4726f3d407ca4b {"aliquot_tag": "ALQ_f102f6c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.WGS.N C3L-03678 LSCC WGS blood_normal CPT0191230002 CPT0191230002.WholeGenome.RP-1303.bam 67092742984 BAM submitted_aligned CPTAC3 dc04e96c-2966-4ab0-b529-fb595243293e fe1d0e569656a019046fa804e7c0fc56 {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03678.WGS.N.hg38 C3L-03678 LSCC WGS blood_normal CPT0191230002 0acf70c7-0014-4247-b7e3-674203be4121_wgs_gdc_realn.bam 95620288289 BAM harmonized CPTAC3 4ed1b874-7344-4479-b1ea-77d7dec97040 36b02c9f33cc9bc8778def97251290f2 {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03678.WGS.T C3L-03678 LSCC WGS tumor CPT0190550006 CPT0190550006.WholeGenome.RP-1303.bam 61731991077 BAM submitted_aligned CPTAC3 88af9603-bd17-42c5-8e8d-f42e9f23cf4f cfe61d7c8049814eb72c471c76f00b7d {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.WGS.T.hg38 C3L-03678 LSCC WGS tumor CPT0190550006 e2a1d57f-6440-4101-81b8-226346ca0ae2_wgs_gdc_realn.bam 90582949605 BAM harmonized CPTAC3 1f387e5d-8d4e-4123-abe7-4f07456d80cd 7df357d49c86d7149c5bef1bd625e8f8 {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.WXS.N C3L-03678 LSCC WXS blood_normal CPT0191230002 CPT0191230002.WholeExome.RP-1303.bam 26751713988 BAM submitted_aligned CPTAC3 4461c0df-797f-44ce-938f-af8c4ab23e1c f672367db55ac84bc4a0d9bc24c33b11 {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03678.WXS.N.hg38 C3L-03678 LSCC WXS blood_normal CPT0191230002 0acf70c7-0014-4247-b7e3-674203be4121_wxs_gdc_realn.bam 36639058133 BAM harmonized CPTAC3 26abe382-68a7-49e1-8739-0012eccaaa2c 3fd7ec07fdd11d4f518cee69106e899c {"aliquot_tag": "ALQ_52e2e1e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03678.WXS.T C3L-03678 LSCC WXS tumor CPT0190550006 CPT0190550006.WholeExome.RP-1303.bam 31798710611 BAM submitted_aligned CPTAC3 27229e24-a7ab-4272-aafd-64c925c4a922 94629b2c1468bbdc7284a3d2be11eecf {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03678.WXS.T.hg38 C3L-03678 LSCC WXS tumor CPT0190550006 e2a1d57f-6440-4101-81b8-226346ca0ae2_wxs_gdc_realn.bam 44605962217 BAM harmonized CPTAC3 7f1c96d6-8cab-436a-a46d-b55d08be1e07 45e203cca2723ed5f4d771ff4948cfc6 {"aliquot_tag": "ALQ_61bdeb53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.MethArray.Green.A C3L-03679 LUAD Methylation_Array tissue_normal CPT0189960006 203273630261_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 933857ef-2c23-46f4-b381-3c69f4ed534d 65651170ca2bce793ef7bcedec76ebd1 {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.MethArray.Green.T C3L-03679 LUAD Methylation_Array tumor CPT0189950006 203561450054_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9ff45896-4436-479c-860d-5f06879ab204 cd1b26eb05255a5d6a4a6abe4878864a {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.MethArray.Red.A C3L-03679 LUAD Methylation_Array tissue_normal CPT0189960006 203273630261_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 648ad74c-4161-42a7-b88b-b90172633e7a c16eee5af94e02904c9e063b9f480e5f {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.MethArray.Red.T C3L-03679 LUAD Methylation_Array tumor CPT0189950006 203561450054_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 ff66e724-2410-4b0c-a51e-47ed855f68a7 e3f90c7f92f8b542321bc047e5301131 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.miRNA-Seq.A.hg38 C3L-03679 LUAD miRNA-Seq tissue_normal CPT0189960009 8f77351a-6e8d-4c06-affd-d35affccdc28_mirnaseq_gdc_realn.bam 309884801 BAM harmonized CPTAC3 a0f286d3-d01a-4db1-b4d4-f4a9ef722099 5171b779ae5f9f9079adc98108aad381 {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.miRNA-Seq.S13_L005_R1.T C3L-03679 LUAD miRNA-Seq tumor CPT0189950009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTAGAG_S13_L005_R1_001.unaln.bam 214376449 BAM S13_L005_R1 submitted_unaligned CPTAC3 3e07dc52-9ded-4b62-8186-4095f74c7866 1ea0086b3ec023f6b8faf9001673bbd9 {"aliquot_tag": "ALQ_dff273f4", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.miRNA-Seq.S29_L007_R1.A C3L-03679 LUAD miRNA-Seq tissue_normal CPT0189960009 190712_UNC32-K00270_0192_BH7HL3BBXY_GCCAAT_S29_L007_R1_001.unaln.bam 267944270 BAM S29_L007_R1 submitted_unaligned CPTAC3 0d78f145-d48d-408e-9080-cb8687002434 cfbcb6b5da4d64cdcacfb0e2ad42a818 {"aliquot_tag": "ALQ_98520924", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.miRNA-Seq.T.hg38 C3L-03679 LUAD miRNA-Seq tumor CPT0189950009 156bde3e-e33d-485b-9c69-df013ac52b8e_mirnaseq_gdc_realn.bam 240909199 BAM harmonized CPTAC3 d31047d1-0d36-4a08-8962-815a651e843f 0b32b912a8bf74a26aac68fbd10b4c30 {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.RNA-Seq.chimeric.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.chimeric.gdc_realn.bam 45173822 BAM chimeric harmonized CPTAC3 207efe2b-45da-4355-9bf3-a0afe75f567b 485079b9125140d62bf25b2ad1044f58 {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.RNA-Seq.chimeric.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.chimeric.gdc_realn.bam 27400580 BAM chimeric harmonized CPTAC3 07de0de5-b7d9-4ffc-8536-594694b76634 e620c47a31bc7f1bcf2007964942eaf0 {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.RNA-Seq.genomic.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.genomic.gdc_realn.bam 11181894851 BAM genomic harmonized CPTAC3 29486dd0-2ed8-4bae-8551-dd6c21ca2f0d c5970caf0adb280d8348584e3e421af2 {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.RNA-Seq.genomic.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.genomic.gdc_realn.bam 12234201424 BAM genomic harmonized CPTAC3 f9061089-53cc-42c6-9de3-53972b5a7fae d3a9a18e69c8f25a2fae0d90023dd91e {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.RNA-Seq.S20_L006_R1.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R1_001.fastq.gz 3912453454 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 24dd0a52-de16-443b-b235-a66edc995dd9 98833c65c96efbecdbaa008fba68fd74 {"aliquot_tag": "ALQ_98520924", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.RNA-Seq.S20_L006_R2.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R2_001.fastq.gz 4119306888 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 309593c7-ba2a-4bb7-8152-946cf6211b80 7fe587a75fcfc44a992f1ac03fadcb05 {"aliquot_tag": "ALQ_98520924", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.RNA-Seq.S5_L002_R1.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R1_001.fastq.gz 3747373205 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 e2a66652-aa64-4bfa-9f7b-3aad99ef5534 12c39f75b656ddcaaf917427ce2b120d {"aliquot_tag": "ALQ_dff273f4", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.RNA-Seq.S5_L002_R2.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R2_001.fastq.gz 4178458008 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 298c28c1-65c7-435c-9788-5053083e8084 e63748fa4fba2c9b8797b70afc331cdd {"aliquot_tag": "ALQ_dff273f4", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.RNA-Seq.transcriptome.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.transcriptome.gdc_realn.bam 8343357055 BAM transcriptome harmonized CPTAC3 9641af35-24fc-4f50-8a35-f3e87f34089f 9f04f59395985b2c1a7366373a182a6b {"aliquot_tag": "ALQ_98520924", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.RNA-Seq.transcriptome.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.transcriptome.gdc_realn.bam 8674749414 BAM transcriptome harmonized CPTAC3 9dceda4c-e3bb-46d9-8339-1628faa9fb49 3d36915749c725437cfa980a5ad8e06d {"aliquot_tag": "ALQ_dff273f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.WGS.N C3L-03679 LUAD WGS blood_normal CPT0191100002 CPT0191100002.WholeGenome.RP-1303.bam 71414866252 BAM submitted_aligned CPTAC3 ad535a9e-0ad7-47e2-9118-e1f56c3c9b77 f93e8a09fa890e5c2269ecb5629c8738 {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03679.WGS.N.hg38 C3L-03679 LUAD WGS blood_normal CPT0191100002 e8f894ad-e0c8-4dd8-b72e-1336b3e1ef3b_wgs_gdc_realn.bam 103667715600 BAM harmonized CPTAC3 92c6aeed-036c-44a9-99bd-52b38f97da15 fef197cd164b8a84dd2e4486e4935ffa {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03679.WGS.T C3L-03679 LUAD WGS tumor CPT0189950006 CPT0189950006.WholeGenome.RP-1303.bam 60956376125 BAM submitted_aligned CPTAC3 64a977be-dfae-4f12-b664-b96cceef3201 f21fdc7d0738da516212a621776763d5 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.WGS.T.hg38 C3L-03679 LUAD WGS tumor CPT0189950006 0846a033-ae31-467a-a838-707bbc3f2d8d_wgs_gdc_realn.bam 88329417448 BAM harmonized CPTAC3 65e1d328-70b8-4afa-bcff-c78c3a93593d b43e4922b21b996503d8ee81c882ace6 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.WXS.A C3L-03679 LUAD WXS tissue_normal CPT0189960006 CPT0189960006.WholeExome.RP-1303.bam 22240286023 BAM submitted_aligned CPTAC3 03c6ffdd-7dc0-466c-9a31-639ae549d998 d103c5c78c4b6f06484a373f6073e148 {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.WXS.A.hg38 C3L-03679 LUAD WXS tissue_normal CPT0189960006 0f49740e-6037-4b71-88f2-0ecbdb776eef_wxs_gdc_realn.bam 30843141334 BAM harmonized CPTAC3 318b6214-e66b-4fe7-a37c-3484a167a465 8a78e87e97775f1081dc6537b488c4bf {"aliquot_tag": "ALQ_8ed14b5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03679.WXS.N C3L-03679 LUAD WXS blood_normal CPT0191100002 CPT0191100002.WholeExome.RP-1303.bam 26504435614 BAM submitted_aligned CPTAC3 001ecd19-b7a8-4365-b8dd-8eeaabc27ae8 8605a2add247d890ffd2010a3bc2fd25 {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03679.WXS.N.hg38 C3L-03679 LUAD WXS blood_normal CPT0191100002 e8f894ad-e0c8-4dd8-b72e-1336b3e1ef3b_wxs_gdc_realn.bam 36393440058 BAM harmonized CPTAC3 211cb316-2675-4b93-a3e6-7c486f2e75bc f3bf7d43512be9accd83b5d9d1833171 {"aliquot_tag": "ALQ_93d6e998", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03679.WXS.T C3L-03679 LUAD WXS tumor CPT0189950006 CPT0189950006.WholeExome.RP-1303.bam 21587811074 BAM submitted_aligned CPTAC3 3110af9c-946b-457f-bc3a-42d7986ab8c9 9f808a0b3f40ec58dc475528d01689c8 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03679.WXS.T.hg38 C3L-03679 LUAD WXS tumor CPT0189950006 0846a033-ae31-467a-a838-707bbc3f2d8d_wxs_gdc_realn.bam 29832162351 BAM harmonized CPTAC3 30172257-31a1-42c1-bb99-f1c5bb98faef 423bff226656c1a8b4e65a7a0a852544 {"aliquot_tag": "ALQ_4f4d6e65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.MethArray.Green.T C3L-03681 GBM Methylation_Array tumor CPT0221180005 203219760065_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 31e41c1f-3159-4899-b9e8-fe741baea2d0 9c995e7750a75aca069e2fd0d57eec62 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.MethArray.Red.T C3L-03681 GBM Methylation_Array tumor CPT0221180005 203219760065_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 2cc36bee-f284-4a71-ad8b-559ee83c3b8f 0d27d0e753e8359171827e9c0b36a371 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.miRNA-Seq.S32_L008_R1.T C3L-03681 GBM miRNA-Seq tumor CPT0221180009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L008_R1_001.unaln.bam 153422312 BAM S32_L008_R1 submitted_unaligned CPTAC3 e362d28e-75eb-48cc-8e47-16e75f3793a4 f25bf4d77b5797bd3cc312d58a96a04b {"aliquot_tag": "ALQ_50935b42", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.miRNA-Seq.T.hg38 C3L-03681 GBM miRNA-Seq tumor CPT0221180009 49f12657-2d1f-4314-995d-9bc42c8709cd_mirnaseq_gdc_realn.bam 174822611 BAM harmonized CPTAC3 44b2ce58-8a2e-4cd0-a71f-c6092a9864c2 f6c62664f53a560a53dd9f2868c3f815 {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.RNA-Seq.chimeric.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.chimeric.gdc_realn.bam 36219612 BAM chimeric harmonized CPTAC3 041c5ad0-2f26-4f5a-83e6-ba64c9ae2529 344d3ad3bde878d5daf1dea75a80652b {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.RNA-Seq.genomic.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.genomic.gdc_realn.bam 9434379641 BAM genomic harmonized CPTAC3 3393929d-6c16-41fe-a717-f8b06a576b1f 8450ba3314889354ea6c380d3a588b98 {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.RNA-Seq.S31_L008_R1.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R1_001.fastq.gz 4328253999 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 2962ecc7-2fe8-4e9e-89d3-b617340d0432 8ef39799b7b277441cbe7503c4dccec9 {"aliquot_tag": "ALQ_50935b42", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.RNA-Seq.S31_L008_R2.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R2_001.fastq.gz 4631403009 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 9bb1f2aa-64c9-4c92-b826-ee22bb21f2a0 d471d4619e40eb1f6711d8c9c8831310 {"aliquot_tag": "ALQ_50935b42", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.RNA-Seq.transcriptome.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.transcriptome.gdc_realn.bam 12135280133 BAM transcriptome harmonized CPTAC3 0529914f-888b-4dac-9b8a-02bb32fdd6b8 65890b93eb705d53faaab93bb1af33a8 {"aliquot_tag": "ALQ_50935b42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.WGS.N C3L-03681 GBM WGS blood_normal CPT0220510002 CPT0220510002.WholeGenome.RP-1303.bam 60596705995 BAM submitted_aligned CPTAC3 08f9bd71-2fa5-41b2-88c2-5014a14fb0f9 82a919f2e2a0b44cd77ec2f202121dc6 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03681.WGS.N.hg38 C3L-03681 GBM WGS blood_normal CPT0220510002 62fc896c-d0c5-4885-b546-4b024f96b1e7_wgs_gdc_realn.bam 87428465300 BAM harmonized CPTAC3 7f3b8669-1552-4554-8f61-7471a0ba9abc 00bfd37919fd9eaf2bf8c2915679b633 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03681.WGS.T C3L-03681 GBM WGS tumor CPT0221180005 CPT0221180005.WholeGenome.RP-1303.bam 66863164893 BAM submitted_aligned CPTAC3 d8d69033-1a00-4e38-ab8f-7fd5a316ed57 7556b9b2b1e4a24aca919ee759d489c5 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.WGS.T.hg38 C3L-03681 GBM WGS tumor CPT0221180005 d262fa4d-cd40-4d6d-962b-0a484e6e124f_wgs_gdc_realn.bam 95992233101 BAM harmonized CPTAC3 ad4153c7-62a9-4e3a-8ed1-e381392867b3 3e56e1336b21f6126c2a65532f4731b6 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.WXS.N C3L-03681 GBM WXS blood_normal CPT0220510002 CPT0220510002.WholeExome.RP-1303.bam 26983951722 BAM submitted_aligned CPTAC3 7a78890a-81a5-46e2-a006-29e43a5ed46e 4427d2fc5f3e76aa5c9a78fa4eb91bd2 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03681.WXS.N.hg38 C3L-03681 GBM WXS blood_normal CPT0220510002 62fc896c-d0c5-4885-b546-4b024f96b1e7_wxs_gdc_realn.bam 36817009281 BAM harmonized CPTAC3 025cd14c-c245-4ff6-8f08-e0c88ca5c078 b6ad48c5992128228c4c2473738257e2 {"aliquot_tag": "ALQ_f7b7a919", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03681.WXS.T C3L-03681 GBM WXS tumor CPT0221180005 CPT0221180005.WholeExome.RP-1303.bam 21830967650 BAM submitted_aligned CPTAC3 5c80218c-45da-4287-98e1-6fca91cff83c ef5e1b802aaa779953721ad75c094efa {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03681.WXS.T.hg38 C3L-03681 GBM WXS tumor CPT0221180005 d262fa4d-cd40-4d6d-962b-0a484e6e124f_wxs_gdc_realn.bam 29913291074 BAM harmonized CPTAC3 c40e15be-ab64-42be-a5f5-418dee1f7645 a49b501a3975df5d3a31faec1e452b82 {"aliquot_tag": "ALQ_59251769", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.MethArray.Green.T C3L-03717 LUAD Methylation_Array tumor CPT0234740006 203561620064_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b1059386-8076-41cb-803e-85b538a0ee3e c800f2a39bd8451cdb0b7259ce8ee114 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.MethArray.Red.T C3L-03717 LUAD Methylation_Array tumor CPT0234740006 203561620064_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 0f9b35f8-1e2e-481e-a478-df259a52bef6 4021ea8442e982e3ed78dbca08e55ab9 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.miRNA-Seq.A.hg38 C3L-03717 LUAD miRNA-Seq tissue_normal CPT0234750006 bfa36740-351a-483f-a47e-c44d04933ae6_mirnaseq_gdc_realn.bam 227561904 BAM harmonized CPTAC3 fcbf6387-1ae8-4178-b4e3-d6a7150223d3 a424e63bf85679cb80002575417295d6 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03717.miRNA-Seq.S151_L007_R1.T C3L-03717 LUAD miRNA-Seq tumor CPT0234740009 190828_UNC32-K00270_0200_BH7GVJBBXY_CACCGG_S151_L007_R1_001.unaln.bam 222359039 BAM S151_L007_R1 submitted_unaligned CPTAC3 807a2b85-afe9-46b6-9071-8e57bca27cfe 5a17481d1038440c2c5214a1bbc3c7cf {"aliquot_tag": "ALQ_dda87a67", "sample": "S151", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.miRNA-Seq.S7_L006_R1.A C3L-03717 LUAD miRNA-Seq tissue_normal CPT0234750006 190712_UNC32-K00270_0192_BH7HL3BBXY_CACGAT_S7_L006_R1_001.unaln.bam 200595873 BAM S7_L006_R1 submitted_unaligned CPTAC3 0cad8a8b-6205-47f6-bf4e-00d079beff5f 0000b65d6a2eb8573ea727dc04559040 {"aliquot_tag": "ALQ_70774e46", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03717.miRNA-Seq.T.hg38 C3L-03717 LUAD miRNA-Seq tumor CPT0234740009 0e0c5bef-a926-410f-afc2-bc09e4fce6bd_mirnaseq_gdc_realn.bam 247676747 BAM harmonized CPTAC3 d3ba4e47-3cf8-4bc6-a7cb-6c7408241293 e1b2d86452a3fd47d89f130a8f04ccf6 {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.RNA-Seq.chimeric.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.chimeric.gdc_realn.bam 40498546 BAM chimeric harmonized CPTAC3 1b60da2d-a9a3-4b37-a1ac-2d435c88fbad f4695cb8bae70a3a9cc02c69893aea65 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03717.RNA-Seq.chimeric.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.chimeric.gdc_realn.bam 46691961 BAM chimeric harmonized CPTAC3 e21e4f14-3718-4480-a6b3-94f6f49bf582 f27418f38de2ff4d243947ffd9ba9469 {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.RNA-Seq.genomic.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.genomic.gdc_realn.bam 9508999063 BAM genomic harmonized CPTAC3 535ac5cd-f7c2-4c5a-b1ac-0b6786948f64 61f0684b1cedc8c50c543c1d4af96d51 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03717.RNA-Seq.genomic.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.genomic.gdc_realn.bam 12097666934 BAM genomic harmonized CPTAC3 55d51372-a0cb-4829-b4ef-ca341fea5f1a 5ba2d265f3417338fc14e683c1c7246c {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.RNA-Seq.S21_L006_R1.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R1_001.fastq.gz 4558899664 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 b09d3d82-e1d8-41d5-8a0d-803946d44c18 9e5886f9909876a30c67ca206a2c7cd5 {"aliquot_tag": "ALQ_dda87a67", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.RNA-Seq.S21_L006_R2.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R2_001.fastq.gz 4907137139 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 569db2ac-ba53-42a2-9902-f80c82fddf1d f715496ec2aa4e4690714f3c950722a0 {"aliquot_tag": "ALQ_dda87a67", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.RNA-Seq.S24_L006_R1.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R1_001.fastq.gz 4011200395 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 65e9b9a7-b693-46c7-8ba1-3f71ca129fb5 5d663364f1bc171057088835e1cd9082 {"aliquot_tag": "ALQ_70774e46", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03717.RNA-Seq.S24_L006_R2.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R2_001.fastq.gz 4121879476 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 5b1346f1-9e3f-4f66-b4fc-5febd7a88009 65ed4dcb92f1f7c6f846efb3c0bea463 {"aliquot_tag": "ALQ_70774e46", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03717.RNA-Seq.transcriptome.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.transcriptome.gdc_realn.bam 7823869315 BAM transcriptome harmonized CPTAC3 acbd8d5a-36e5-424d-bc8a-45694f001f69 9ba5175759bb6a99ee4b9423b1556f14 {"aliquot_tag": "ALQ_70774e46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03717.RNA-Seq.transcriptome.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.transcriptome.gdc_realn.bam 10253833436 BAM transcriptome harmonized CPTAC3 a3ad906b-495d-4178-8012-9426c5b1539f 8491a6465b856181a374dedb3e77c79e {"aliquot_tag": "ALQ_dda87a67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.WGS.N C3L-03717 LUAD WGS blood_normal CPT0235690002 CPT0235690002.WholeGenome.RP-1303.bam 73774164554 BAM submitted_aligned CPTAC3 db60d572-1db1-448f-8225-bb9b4c19c80e 3a83f4e821f299349956a3f7361f0130 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03717.WGS.N.hg38 C3L-03717 LUAD WGS blood_normal CPT0235690002 08bcc004-30bd-4be8-b277-ac5bb83e4f79_wgs_gdc_realn.bam 107806932916 BAM harmonized CPTAC3 4e6a6c06-5fbb-487a-b575-7ce4912d73cc a4338be02fffe63766511bcaa49b8fb7 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03717.WGS.T C3L-03717 LUAD WGS tumor CPT0234740006 CPT0234740006.WholeGenome.RP-1303.bam 63967175863 BAM submitted_aligned CPTAC3 4ace2d37-2469-4a84-8bec-ae151accd9af 7b539ff70835709d9fd2470acb017b89 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.WGS.T.hg38 C3L-03717 LUAD WGS tumor CPT0234740006 a51447de-1b8d-4b55-95bf-5e6e07fdf546_wgs_gdc_realn.bam 94646253598 BAM harmonized CPTAC3 acaa48ed-5b19-4353-9f59-d8516f155241 972420a340a800e98caf0a40345efc8a {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.WXS.N C3L-03717 LUAD WXS blood_normal CPT0235690002 CPT0235690002.WholeExome.RP-1303.bam 28314233035 BAM submitted_aligned CPTAC3 01f81cfe-10da-4127-b146-1cf430a6c3e3 b5958f47ec8b70cb185864bdef70ab71 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03717.WXS.N.hg38 C3L-03717 LUAD WXS blood_normal CPT0235690002 08bcc004-30bd-4be8-b277-ac5bb83e4f79_wxs_gdc_realn.bam 39085954742 BAM harmonized CPTAC3 7088bb35-9895-4107-a3cb-f947c133007c 7c03c24fa0c27ddbea77c298a1fe5791 {"aliquot_tag": "ALQ_dfc1bf4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03717.WXS.T C3L-03717 LUAD WXS tumor CPT0234740006 CPT0234740006.WholeExome.RP-1303.bam 24005418441 BAM submitted_aligned CPTAC3 8430cba7-4f4a-4916-b66c-337d1aaba420 2a2ef94a7ec8305212a693b4bf4d2d31 {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03717.WXS.T.hg38 C3L-03717 LUAD WXS tumor CPT0234740006 a51447de-1b8d-4b55-95bf-5e6e07fdf546_wxs_gdc_realn.bam 33180027700 BAM harmonized CPTAC3 429e7f31-adc8-444a-abf0-2f2ffcc0c184 15550fae89f82d0b6950e241f0e7a74b {"aliquot_tag": "ALQ_4d1767f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.MethArray.Green.T C3L-03721 LUAD Methylation_Array tumor CPT0234700006 203561450014_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 72701e20-52c0-440f-b504-f0eac5514dce b78502e41b757681d45cc27d841524bc {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.MethArray.Red.T C3L-03721 LUAD Methylation_Array tumor CPT0234700006 203561450014_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 d840dace-3adb-4db6-a902-06ed645462b5 3847029331c3eb93e62694644152d945 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.miRNA-Seq.A.hg38 C3L-03721 LUAD miRNA-Seq tissue_normal CPT0234710006 13343134-1598-4484-a00d-c0cea64b5155_mirnaseq_gdc_realn.bam 284110343 BAM harmonized CPTAC3 1241f439-348f-4c90-82f2-4f173e77c6cc 0d4f579aee47c0db69cc67242601526a {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03721.miRNA-Seq.S4_L006_R1.T C3L-03721 LUAD miRNA-Seq tumor CPT0234700009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAAAAG_S4_L006_R1_001.unaln.bam 155487417 BAM S4_L006_R1 submitted_unaligned CPTAC3 f5ab7bd5-d1cc-4326-a51b-b204d3d2de9c 696bc43531d488ac468bb6d904772f0f {"aliquot_tag": "ALQ_2828dca7", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.miRNA-Seq.S5_L006_R1.A C3L-03721 LUAD miRNA-Seq tissue_normal CPT0234710006 190712_UNC32-K00270_0192_BH7HL3BBXY_CAACTA_S5_L006_R1_001.unaln.bam 253312676 BAM S5_L006_R1 submitted_unaligned CPTAC3 263d313c-383b-4b11-8858-1dcfc6b544cb c050fe3a78255e83aeb78d0dceeaa5cd {"aliquot_tag": "ALQ_85f7e886", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03721.miRNA-Seq.T.hg38 C3L-03721 LUAD miRNA-Seq tumor CPT0234700009 087e32c7-c64a-47cf-a410-d222959c35fd_mirnaseq_gdc_realn.bam 169418204 BAM harmonized CPTAC3 555154f3-38c0-43c7-b989-f5994923d16b dcb4320348a8f27542ecb75bce5cd961 {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.RNA-Seq.chimeric.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.chimeric.gdc_realn.bam 158639877 BAM chimeric harmonized CPTAC3 0422ab86-3f29-4f20-90ee-a8cfafa9c589 a237a8b10fc735ead7c17e615df3d413 {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03721.RNA-Seq.chimeric.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.chimeric.gdc_realn.bam 44175288 BAM chimeric harmonized CPTAC3 a6b66353-a0ad-413a-8361-43d6d36bfb4d b8b02ffaee1a47eb8dd14e531e47feef {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.RNA-Seq.genomic.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.genomic.gdc_realn.bam 9553535842 BAM genomic harmonized CPTAC3 de3c6dbd-580b-42db-9aa6-7e8565de37b4 14ee906ab41851d11e42b0f5110db9fe {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03721.RNA-Seq.genomic.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.genomic.gdc_realn.bam 10903759860 BAM genomic harmonized CPTAC3 f30b2214-044f-44b7-9b8f-b9a2ac765411 3b1520a0399e6690fb4a00a58d505200 {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.RNA-Seq.S22_L006_R1.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R1_001.fastq.gz 3896456947 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 fe53295e-126a-4062-952c-c3e4214108ba 8596ad1327aba58834fbae67d22e6e89 {"aliquot_tag": "ALQ_85f7e886", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03721.RNA-Seq.S22_L006_R2.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R2_001.fastq.gz 4192643077 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 2c975488-ea18-4118-87bf-0d41cac751b6 6d2be3760303dce6d6e6f31844641fba {"aliquot_tag": "ALQ_85f7e886", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03721.RNA-Seq.S23_L006_R1.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R1_001.fastq.gz 4501554460 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 bdf57d83-d1be-45e2-ae74-6981c82ad434 34a227a6c776bf96dc1eff4726da933d {"aliquot_tag": "ALQ_2828dca7", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.RNA-Seq.S23_L006_R2.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R2_001.fastq.gz 4876422066 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 3c124874-61f3-4882-867c-e4929f37efa4 84cd01930acd943cca048cd7fcd07af7 {"aliquot_tag": "ALQ_2828dca7", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.RNA-Seq.transcriptome.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.transcriptome.gdc_realn.bam 8076242832 BAM transcriptome harmonized CPTAC3 7e068d1a-0387-4059-88de-36c07f8767e9 14737d97f174bfab25a9c7f8995b88ff {"aliquot_tag": "ALQ_85f7e886", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03721.RNA-Seq.transcriptome.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.transcriptome.gdc_realn.bam 10176546077 BAM transcriptome harmonized CPTAC3 57b4e654-14b6-4283-b09d-6bae3e937005 93fe109bb22046c62f8c18f7dcf7489c {"aliquot_tag": "ALQ_2828dca7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.WGS.N C3L-03721 LUAD WGS blood_normal CPT0235670002 CPT0235670002.WholeGenome.RP-1303.bam 66978454146 BAM submitted_aligned CPTAC3 3085ea60-6d0c-4312-98d9-4ef1aa8e0393 7a30150bc1a9eb15ee1c0a3c60caaa5f {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03721.WGS.N.hg38 C3L-03721 LUAD WGS blood_normal CPT0235670002 507112b8-b843-43a3-9e73-f3fdfb6bf2c9_wgs_gdc_realn.bam 97964658206 BAM harmonized CPTAC3 6bec62d0-ab99-4187-b854-4b061588c07e 9c3b8bcd2e4a47e30fd35a8e10cd0993 {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03721.WGS.T C3L-03721 LUAD WGS tumor CPT0234700006 CPT0234700006.WholeGenome.RP-1303.bam 83695007049 BAM submitted_aligned CPTAC3 c019e549-2eca-4bf9-9370-5ce054fc4fe6 a1d17e2efcca41d66f6a07b0a65cb311 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.WGS.T.hg38 C3L-03721 LUAD WGS tumor CPT0234700006 53b0dcc1-dd63-4184-8714-07fac13bde7d_wgs_gdc_realn.bam 122060227501 BAM harmonized CPTAC3 e46f55e6-ada8-4b0d-9237-697b76179e01 f862a403f7a077c63502514e7a51a34d {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.WXS.N C3L-03721 LUAD WXS blood_normal CPT0235670002 CPT0235670002.WholeExome.RP-1303.bam 27331578309 BAM submitted_aligned CPTAC3 026685f6-7fb5-4326-a7d3-89d782012984 650820d44dc6bf98edf60edad4c1a5b1 {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03721.WXS.N.hg38 C3L-03721 LUAD WXS blood_normal CPT0235670002 507112b8-b843-43a3-9e73-f3fdfb6bf2c9_wxs_gdc_realn.bam 37128456007 BAM harmonized CPTAC3 45f3b611-b881-4d78-9aea-316c45564689 bfe71d2fc0136de2ce7221912de089c8 {"aliquot_tag": "ALQ_60f1012e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03721.WXS.T C3L-03721 LUAD WXS tumor CPT0234700006 CPT0234700006.WholeExome.RP-1303.bam 25338565064 BAM submitted_aligned CPTAC3 790f25e4-d861-4a69-a6ea-6f7bc5291cd0 d7fe0f475fd2e0c77220f932f7757781 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03721.WXS.T.hg38 C3L-03721 LUAD WXS tumor CPT0234700006 53b0dcc1-dd63-4184-8714-07fac13bde7d_wxs_gdc_realn.bam 35897077816 BAM harmonized CPTAC3 acd9819b-c9b2-4d76-a6dc-8ad90eb91b31 2f305503f00fe79f4015f419c422bcc9 {"aliquot_tag": "ALQ_b897c136", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.MethArray.Green.A C3L-03726 LUAD Methylation_Array tissue_normal CPT0225640009 203561450027_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 49582b0a-289d-4749-8be7-0f91773d0af5 d81eaaabc18dedb8924639722d0c3737 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.MethArray.Green.T C3L-03726 LUAD Methylation_Array tumor CPT0225570006 203561620162_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ba968284-87d1-4548-8a40-a993f5919d1f 18f5f2e48cded6117b08baa692820c44 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.MethArray.Red.A C3L-03726 LUAD Methylation_Array tissue_normal CPT0225640009 203561450027_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 b3744aca-47ad-45a5-9f0c-d895149362b9 4adc23897ff6839884e17a5281de6077 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.MethArray.Red.T C3L-03726 LUAD Methylation_Array tumor CPT0225570006 203561620162_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 7975ea0b-b515-4f3e-aec4-8fcd0d49f9c4 848a8ef2139ab7d4d7188feafce37984 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.miRNA-Seq.A.hg38 C3L-03726 LUAD miRNA-Seq tissue_normal CPT0225640006 50be575c-cd4d-4f31-92ba-bf9b9b4536be_mirnaseq_gdc_realn.bam 230329871 BAM harmonized CPTAC3 a4c04c5a-f1af-4604-aec5-e6f633bea13c 91ca82476bad7f32adfcf1baa9bc8800 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.miRNA-Seq.S16_L007_R1.A C3L-03726 LUAD miRNA-Seq tissue_normal CPT0225640006 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGGCC_S16_L007_R1_001.unaln.bam 204331196 BAM S16_L007_R1 submitted_unaligned CPTAC3 16e1328a-150c-4480-ba34-a9aecf1629d7 4d355a78756c1d694d129220864df24c {"aliquot_tag": "ALQ_ec96bf79", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.miRNA-Seq.S28_L004_R1.T C3L-03726 LUAD miRNA-Seq tumor CPT0225570009 190722_UNC31-K00269_0234_AH7VGTBBXY_CATGGC_S28_L004_R1_001.unaln.bam 221489169 BAM S28_L004_R1 submitted_unaligned CPTAC3 f8a2289f-5d7d-4996-97ff-58d89c1c6466 d0bd3cc23c8b8f6ec5d340c947635a79 {"aliquot_tag": "ALQ_bd1daa96", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.miRNA-Seq.T.hg38 C3L-03726 LUAD miRNA-Seq tumor CPT0225570009 fa427b82-a49a-4447-99b8-124ec0a3e387_mirnaseq_gdc_realn.bam 243138284 BAM harmonized CPTAC3 2794805c-e5ab-4d06-bb77-cd79d4c29c9e 9ba5a2eca9aaa81d8594eb9623e3765b {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.RNA-Seq.chimeric.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.chimeric.gdc_realn.bam 26303613 BAM chimeric harmonized CPTAC3 4d517290-89eb-4a9b-8b6f-38d093140ff6 97e8d70c3ed5cc01bbbb4781ebf77120 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.RNA-Seq.chimeric.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.chimeric.gdc_realn.bam 35246912 BAM chimeric harmonized CPTAC3 a0d47a31-4523-46f7-aa31-a9b0185a66d9 cee7202cbef8c074c7e1280f7ce5f7a9 {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.RNA-Seq.genomic.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.genomic.gdc_realn.bam 10079330980 BAM genomic harmonized CPTAC3 ce473a20-5270-428f-bf56-56c4f634e5aa 63de9e33ffc4eec25b38be1d60910334 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.RNA-Seq.genomic.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.genomic.gdc_realn.bam 11657199152 BAM genomic harmonized CPTAC3 e5f43cde-88a4-4dcd-b0c3-cb603325c22f a074ed509a0a8a2321c80ee15a5fb1e4 {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.RNA-Seq.S22_L006_R1.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R1_001.fastq.gz 4076005533 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 7416b7eb-d016-4d5f-bb8c-5f6522fab3c6 eb7db91665cb0e5ab5c957acd57849f3 {"aliquot_tag": "ALQ_bd1daa96", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.RNA-Seq.S22_L006_R2.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R2_001.fastq.gz 4643808466 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 4e181e91-e18e-4087-b243-0aa9d9cc1f26 8a4b6d916773987af70685d82458c90c {"aliquot_tag": "ALQ_bd1daa96", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.RNA-Seq.S26_L007_R1.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R1_001.fastq.gz 3885824144 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 b70b30a2-fe04-4db8-9114-a93e8917d568 aa1f3e21ef25c8c5fbf79d05c4127bed {"aliquot_tag": "ALQ_ec96bf79", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.RNA-Seq.S26_L007_R2.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R2_001.fastq.gz 4221526815 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 9b248614-6222-40fe-8be5-c21de1b3ee60 f294d29ce31e71531e551431967ef727 {"aliquot_tag": "ALQ_ec96bf79", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.RNA-Seq.transcriptome.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.transcriptome.gdc_realn.bam 8902048725 BAM transcriptome harmonized CPTAC3 256492ef-764c-411f-b213-2f274b621227 730e6835ef53cb2669bf6170f517de23 {"aliquot_tag": "ALQ_ec96bf79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.RNA-Seq.transcriptome.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.transcriptome.gdc_realn.bam 9264735441 BAM transcriptome harmonized CPTAC3 a525277e-a09f-4727-827c-fcbecefd2792 a6f4f3d29b5260b3fd74b2349146d7c7 {"aliquot_tag": "ALQ_bd1daa96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.WGS.N C3L-03726 LUAD WGS blood_normal CPT0226060002 CPT0226060002.WholeGenome.RP-1303.bam 71035178677 BAM submitted_aligned CPTAC3 d808ccbc-f339-43de-8573-0b8acfbc9b79 69d2908d5f5cd3a306330bd172515032 {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03726.WGS.N.hg38 C3L-03726 LUAD WGS blood_normal CPT0226060002 126101fc-f484-4fc1-832b-cebdb98357f9_wgs_gdc_realn.bam 103512559665 BAM harmonized CPTAC3 76ff4681-be57-4838-b588-558b30afda6d ce26a3218ac2e877eb97d0bfb0429fbc {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03726.WGS.T C3L-03726 LUAD WGS tumor CPT0225570006 CPT0225570006.WholeGenome.RP-1303.bam 67929053511 BAM submitted_aligned CPTAC3 a55ecf95-90bd-4f4b-8f83-0956de8bbb5d 1b5c5e390bd5b2e0b32705701c0a3107 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.WGS.T.hg38 C3L-03726 LUAD WGS tumor CPT0225570006 441c63b4-af8e-4c0b-ad8a-1712eb84eec1_wgs_gdc_realn.bam 100035866501 BAM harmonized CPTAC3 5aa9b84e-d899-4381-a366-f1171dff0c2f 19db9b8e2d6247c54b9e83d2039b4860 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.WXS.A C3L-03726 LUAD WXS tissue_normal CPT0225640009 CPT0225640009.WholeExome.RP-1303.bam 19596213761 BAM submitted_aligned CPTAC3 5a32e56b-880a-4d65-8041-fcd0ce32728f e2c606c0b1453a7799cb8b293c8a9318 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.WXS.A.hg38 C3L-03726 LUAD WXS tissue_normal CPT0225640009 2cccc455-3ab7-463f-8c84-ea81ead3d2df_wxs_gdc_realn.bam 27051494580 BAM harmonized CPTAC3 17e55aaf-94df-4118-ad7b-e27435baabc7 1ebea0d070047428e0faa25d09f97860 {"aliquot_tag": "ALQ_7c29a2e8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03726.WXS.N C3L-03726 LUAD WXS blood_normal CPT0226060002 CPT0226060002.WholeExome.RP-1303.bam 25177654123 BAM submitted_aligned CPTAC3 00b34ad4-96b9-45ab-86b5-7125b53fc106 5bae2c87c7a06fb4c08a810a06c1ce6f {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03726.WXS.N.hg38 C3L-03726 LUAD WXS blood_normal CPT0226060002 126101fc-f484-4fc1-832b-cebdb98357f9_wxs_gdc_realn.bam 34699934616 BAM harmonized CPTAC3 caee2926-7794-4b90-986d-74d76d8e8ef5 134855e158ad291fb34d65660c651070 {"aliquot_tag": "ALQ_768ad180", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03726.WXS.T C3L-03726 LUAD WXS tumor CPT0225570006 CPT0225570006.WholeExome.RP-1303.bam 21961009776 BAM submitted_aligned CPTAC3 314ba397-b607-4ecb-9475-bb6df9cef592 688ac9e179f7ca2428b0fbaa7d15a0d6 {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03726.WXS.T.hg38 C3L-03726 LUAD WXS tumor CPT0225570006 441c63b4-af8e-4c0b-ad8a-1712eb84eec1_wxs_gdc_realn.bam 30349419054 BAM harmonized CPTAC3 027900d6-699f-42a8-8d2f-46738a5dfe20 d062f88bfc80a012031192306622156e {"aliquot_tag": "ALQ_2da2b707", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.MethArray.Green.T C3L-03727 GBM Methylation_Array tumor CPT0225730006 203220070156_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e7c6d52c-4b51-4138-a8c8-178fa1af7833 fc8ab0ec2b8140e3677c296cefb16b9f {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.MethArray.Red.T C3L-03727 GBM Methylation_Array tumor CPT0225730006 203220070156_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 7abd3627-17b6-44aa-a411-a4274aab3417 9d7b725582f1ab08f4445cb40b192554 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.miRNA-Seq.S34_L002_R1.T C3L-03727 GBM miRNA-Seq tumor CPT0225730009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGTCA_S34_L002_R1_001.unaln.bam 227966354 BAM S34_L002_R1 submitted_unaligned CPTAC3 6d10aabf-ba4a-46cd-8331-4e753b3b0a02 a10238c291f332f2e688bcea49cb841b {"aliquot_tag": "ALQ_555ad5d", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.miRNA-Seq.T.hg38 C3L-03727 GBM miRNA-Seq tumor CPT0225730009 7404ef25-0fe7-454e-9b8e-c633ba462c9a_mirnaseq_gdc_realn.bam 252948167 BAM harmonized CPTAC3 9b428aa7-ad5b-442e-b156-83c607837d07 cdde50d3675265969a802457c4d01a01 {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.RNA-Seq.chimeric.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.chimeric.gdc_realn.bam 82984573 BAM chimeric harmonized CPTAC3 94460853-32ac-4364-b891-c9c4eb46ddfb 03869603160e1ee79e6358ca8058ea47 {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.RNA-Seq.genomic.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.genomic.gdc_realn.bam 9003308770 BAM genomic harmonized CPTAC3 c494ec13-2e4f-4696-a24c-f6b33aaa0637 dd9c12a88ccfd06dd0000c2ff0209fca {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.RNA-Seq.S20_L006_R1.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R1_001.fastq.gz 4340578448 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 b526132b-252b-4f64-a2ca-38cc2054e315 4df09db66023d0c55395f0f81b721a9d {"aliquot_tag": "ALQ_555ad5d", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.RNA-Seq.S20_L006_R2.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R2_001.fastq.gz 4701005765 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 7f9a8462-d332-440b-829b-cb89534d53ac 827b7ba71c3ceb8b09b5abb936d43f79 {"aliquot_tag": "ALQ_555ad5d", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.RNA-Seq.transcriptome.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.transcriptome.gdc_realn.bam 11099928268 BAM transcriptome harmonized CPTAC3 3bb03e98-aa2b-4449-91cc-f70f79b93a31 bbf4d381af2ec4b41cf6892cdf7eaa58 {"aliquot_tag": "ALQ_555ad5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.WGS.N C3L-03727 GBM WGS blood_normal CPT0226070002 CPT0226070002.WholeGenome.RP-1303.bam 57874549766 BAM submitted_aligned CPTAC3 dabeaec9-1bd1-438c-96d8-4563576a1313 13184df7e9d6bebad213634f6684a0ec {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03727.WGS.N.hg38 C3L-03727 GBM WGS blood_normal CPT0226070002 c9645e62-b3e4-4624-90e1-dfb6cec6a2e1_wgs_gdc_realn.bam 83183578779 BAM harmonized CPTAC3 7247fffc-8e61-4aaf-9730-d778464a2102 25ba974c7dee61f760bcef752a72c9dd {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03727.WGS.T C3L-03727 GBM WGS tumor CPT0225730006 CPT0225730006.WholeGenome.RP-1303.bam 60652599834 BAM submitted_aligned CPTAC3 68e0af99-c50e-4e2a-a646-41cbbd818126 6a7b2de16b1563b178ea6b8157eaae19 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.WGS.T.hg38 C3L-03727 GBM WGS tumor CPT0225730006 af5e5eeb-1d07-479b-902c-a8c807108148_wgs_gdc_realn.bam 88839794751 BAM harmonized CPTAC3 fc8a6281-297a-47a7-a5a5-9ac5562091f8 8c669d63be79b10d16dd8e68af196f7f {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.WXS.N C3L-03727 GBM WXS blood_normal CPT0226070002 CPT0226070002.WholeExome.RP-1303.bam 25440364596 BAM submitted_aligned CPTAC3 ced2166a-2169-4cce-8d33-65767036ca35 28b684d1ac4c7e8120cd81a5c87e4167 {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03727.WXS.N.hg38 C3L-03727 GBM WXS blood_normal CPT0226070002 c9645e62-b3e4-4624-90e1-dfb6cec6a2e1_wxs_gdc_realn.bam 35442799838 BAM harmonized CPTAC3 3783f164-e889-434f-ace0-a02ab7f52081 a1a493adf28b1a473effde6dee23a086 {"aliquot_tag": "ALQ_4beaf830", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03727.WXS.T C3L-03727 GBM WXS tumor CPT0225730006 CPT0225730006.WholeExome.RP-1303.bam 21777053944 BAM submitted_aligned CPTAC3 914ba8fe-bd54-4251-8ae5-6cfbc2dcfe39 ff727835c99368acf674861ef296d9b8 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03727.WXS.T.hg38 C3L-03727 GBM WXS tumor CPT0225730006 af5e5eeb-1d07-479b-902c-a8c807108148_wxs_gdc_realn.bam 29882936385 BAM harmonized CPTAC3 28946ab5-9744-4f74-b09c-17024f1c530f 33d68591448ce6142f3537477fc57a16 {"aliquot_tag": "ALQ_95eab0cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.MethArray.Green.T C3L-03728 GBM Methylation_Array tumor CPT0225760006 203219650042_R07C01_Grn.idat 13676227 IDAT Green NA CPTAC3 be8578db-0659-4bff-be3e-28ad92e8263f 4cf40997be036698273cc54b26028959 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.MethArray.Red.T C3L-03728 GBM Methylation_Array tumor CPT0225760006 203219650042_R07C01_Red.idat 13676227 IDAT Red NA CPTAC3 50f2e9f8-72bb-481b-9731-10015ed6fbd9 732c7a08f80e164868bf1f0c38845be4 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.miRNA-Seq.S33_L002_R1.T C3L-03728 GBM miRNA-Seq tumor CPT0225760009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCGTCC_S33_L002_R1_001.unaln.bam 185612634 BAM S33_L002_R1 submitted_unaligned CPTAC3 c72f981f-c656-4439-8209-ea0232f27557 6d3ef8d1f31b90e555564ba2731b77dd {"aliquot_tag": "ALQ_cdb5222d", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.miRNA-Seq.T.hg38 C3L-03728 GBM miRNA-Seq tumor CPT0225760009 9132e3c7-f895-4a21-800c-dda668a465cd_mirnaseq_gdc_realn.bam 204370357 BAM harmonized CPTAC3 d14d95ca-a9ae-4c0b-9ca4-a184072820c0 4f6940637448b4b2707bfca3a04a74ae {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.RNA-Seq.chimeric.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.chimeric.gdc_realn.bam 95679507 BAM chimeric harmonized CPTAC3 91ee5330-5d98-4395-bab9-c295521069cc 370a58d3cf4acc68f6c49def90f4e18c {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.RNA-Seq.genomic.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.genomic.gdc_realn.bam 9078827772 BAM genomic harmonized CPTAC3 61cdb955-ccd0-4f5c-935c-d0f9994d1cb4 18b6804c31eadef92d155c7b6ad9ccfd {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.RNA-Seq.S22_L006_R1.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 b4baf937-60b5-42f9-a33e-1209aa16242b e1a7531d449aa9012fee9747c85cdbf2 {"aliquot_tag": "ALQ_cdb5222d", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.RNA-Seq.S22_L006_R2.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 1c99ba97-600a-4b1f-8896-eaa03fcb0372 b042f7e6520aad7088e5e25eedf03980 {"aliquot_tag": "ALQ_cdb5222d", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.RNA-Seq.transcriptome.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.transcriptome.gdc_realn.bam 9887316159 BAM transcriptome harmonized CPTAC3 311495cf-f412-47e7-ad1a-02280d820554 09d1ebfbe7337b022105a9c12127769b {"aliquot_tag": "ALQ_cdb5222d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.WGS.N C3L-03728 GBM WGS blood_normal CPT0226080002 CPT0226080002.WholeGenome.RP-1303.bam 57921937659 BAM submitted_aligned CPTAC3 2307c4bb-6f8e-4223-96dd-2506f0c1bc72 b1710ba80321aef12ea8311840ae9c52 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03728.WGS.N.hg38 C3L-03728 GBM WGS blood_normal CPT0226080002 97ec897b-c7b9-4ccb-8bd0-caa209d71254_wgs_gdc_realn.bam 83720461591 BAM harmonized CPTAC3 a08af25b-9aed-42e8-9bb2-e32873fe5874 ec976ce17710827ddb8ed4c88d82b848 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03728.WGS.T C3L-03728 GBM WGS tumor CPT0225760006 CPT0225760006.WholeGenome.RP-1303.bam 56031768687 BAM submitted_aligned CPTAC3 42bac2f7-191c-45f7-aa29-ca3375844664 e1d15736f8c71616f1e6f31c8a2ee0a7 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.WGS.T.hg38 C3L-03728 GBM WGS tumor CPT0225760006 269ffccf-de74-4303-8d2f-0b737598d9f9_wgs_gdc_realn.bam 80472595369 BAM harmonized CPTAC3 85e6d6ce-fd69-4897-a631-d7ba1c5affd6 47d4d248c75d2f5d98935610371651b9 {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.WXS.N C3L-03728 GBM WXS blood_normal CPT0226080002 CPT0226080002.WholeExome.RP-1303.bam 27682972484 BAM submitted_aligned CPTAC3 65fc79b0-c28c-4652-8d28-155eb23f10e6 e6d7ac4e44adf33999a9157a8eab1146 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03728.WXS.N.hg38 C3L-03728 GBM WXS blood_normal CPT0226080002 97ec897b-c7b9-4ccb-8bd0-caa209d71254_wxs_gdc_realn.bam 38186917525 BAM harmonized CPTAC3 c97ebe61-c87c-4ff6-9294-24d4b65d7d42 c6647cffe8f02349ab593052ef95d530 {"aliquot_tag": "ALQ_c9ba6fe1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03728.WXS.T C3L-03728 GBM WXS tumor CPT0225760006 CPT0225760006.WholeExome.RP-1303.bam 26317526083 BAM submitted_aligned CPTAC3 c2addcd8-750b-4cca-a7dc-2d575e954e2d 5709de1f26454f7bc383710e788c113d {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03728.WXS.T.hg38 C3L-03728 GBM WXS tumor CPT0225760006 269ffccf-de74-4303-8d2f-0b737598d9f9_wxs_gdc_realn.bam 35731653164 BAM harmonized CPTAC3 ed09a41d-0f97-4e69-9b66-9500b0a7381f 93df15b377b2aac359a84f06f96da6ba {"aliquot_tag": "ALQ_5d0a3fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03733.MethArray.Green.T C3L-03733 GBM Methylation_Array tumor CPT0388870006 204930630107_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 25809078-a2d0-4051-be7e-4cc8acaaaf0c 92856b6deadf2cec7820538e16c64fe4 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.MethArray.Red.T C3L-03733 GBM Methylation_Array tumor CPT0388870006 204930630107_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 0d4726e6-9601-4df3-83a1-7c67f3320910 7df49410d21bf695e7fb42cb80f1ec24 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.miRNA-Seq.S30_L007_R1.T C3L-03733 GBM miRNA-Seq tumor CPT0388870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GATCAG_S30_L007_R1_001.unaln.bam 223566229 BAM S30_L007_R1 submitted_unaligned CPTAC3 10d636a4-81d8-42c4-a6b0-c6a7fd06b140 4f8c18eeb73beece79024f090ea0aa73 {"aliquot_tag": "ALQ_e6efd003", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.miRNA-Seq.T.hg38 C3L-03733 GBM miRNA-Seq tumor CPT0388870009 77bec3e5-595f-420f-a23b-59bffbcccf44_mirnaseq_gdc_realn.bam 246530370 BAM harmonized CPTAC3 706c4a4d-10a9-444a-9a5f-c768b944806d 51898f31e977bea81f53453df1887162 {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.RNA-Seq.chimeric.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.chimeric.gdc_realn.bam 266646753 BAM chimeric harmonized CPTAC3 dc0a3251-2040-4361-bb9a-4f3b78cffbc6 aeaf82ea312c7b78a22094b977e0a499 {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.genomic.gdc_realn.bam 8079501100 BAM genomic harmonized CPTAC3 602fb004-e784-4254-b4af-0f64915cf9fd 910f857c7b6b9aae00880ae8ddc28fca {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.RNA-Seq.S1_L001_R1.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 d3c8b80a-f15c-47ad-927e-96483a71a4ac 8a7625be123cf1142d9d514d3dd2f0fe {"aliquot_tag": "ALQ_e6efd003", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.RNA-Seq.S1_L001_R2.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 d68a3a3f-d8d9-488f-b581-3eb6bf3c545f 3417e6f248552d41697758862f7c9a80 {"aliquot_tag": "ALQ_e6efd003", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.RNA-Seq.transcriptome.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.transcriptome.gdc_realn.bam 9601312087 BAM transcriptome harmonized CPTAC3 375fc4be-2a70-4779-a225-daec566e15d0 928df5dbec6cf5ef5dad8d3ecc38d402 {"aliquot_tag": "ALQ_e6efd003", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.WGS.N C3L-03733 GBM WGS blood_normal CPT0388900002 CPT0388900002.WholeGenome.RP-2158.bam 25383296813 BAM submitted_aligned CPTAC3 cd628747-fd76-4da6-97cb-6e20282d4b6a f60aa2f2e02306c83488611b2cf877ce {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03733.WGS.N.hg38 C3L-03733 GBM WGS blood_normal CPT0388900002 b5c33706-5e86-42f3-9fd2-ab09c7614d05_wgs_gdc_realn.bam 73835643752 BAM harmonized CPTAC3 4b5cd4a1-6a8d-4d03-a714-0d819779e047 d5950930c8028fea2b5fbf987837f528 {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03733.WGS.T C3L-03733 GBM WGS tumor CPT0388870006 CPT0388870006.WholeGenome.RP-2158.bam 21210221177 BAM submitted_aligned CPTAC3 085c2ec3-e073-4e33-b105-b7a31acfd571 930a132c5a56fb79f5a2efd0e2be2ff5 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.WGS.T.hg38 C3L-03733 GBM WGS tumor CPT0388870006 bfb2401e-4a92-4242-92bb-d01ecb08d14d_wgs_gdc_realn.bam 61788693098 BAM harmonized CPTAC3 3670c996-27b9-48ba-ba81-9f8129b1d722 69ae73e3bc358adab112f38b8db67d93 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.WXS.N C3L-03733 GBM WXS blood_normal CPT0388900002 CPT0388900002.WholeExome.RP-1303.bam 25281066656 BAM submitted_aligned CPTAC3 899e62b6-5d45-429c-b1a8-1de6e24057c5 5cdca3407113895fc108311062353b93 {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03733.WXS.N.hg38 C3L-03733 GBM WXS blood_normal CPT0388900002 b5c33706-5e86-42f3-9fd2-ab09c7614d05_wxs_gdc_realn.bam 35376963378 BAM harmonized CPTAC3 25d1bdb6-0d99-4a7d-92b6-85eef9854759 de933d289c3c3f280465191b5f49afe9 {"aliquot_tag": "ALQ_841063e", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-03733.WXS.T C3L-03733 GBM WXS tumor CPT0388870006 CPT0388870006.WholeExome.RP-1303.bam 26953591550 BAM submitted_aligned CPTAC3 9f09db89-5fb9-43ab-9858-a6958bfff22b 6536aa66cea208db82f3004be2b63cf7 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03733.WXS.T.hg38 C3L-03733 GBM WXS tumor CPT0388870006 bfb2401e-4a92-4242-92bb-d01ecb08d14d_wxs_gdc_realn.bam 36743064043 BAM harmonized CPTAC3 33ac154f-1767-4f9b-8075-a12172189894 2c182698dc50404bc3ddf84f47b98952 {"aliquot_tag": "ALQ_7650cd92", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-03735.MethArray.Green.T C3L-03735 GBM Methylation_Array tumor CPT0264120006 204372030139_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1f3898f2-8567-4571-9c7e-6701ab7e09b2 e4ea6995a9d4330685d9c6c88da21b46 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.MethArray.Red.T C3L-03735 GBM Methylation_Array tumor CPT0264120006 204372030139_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 97fac48f-ce44-476b-b272-67f76253e6f8 b220788c886cc9e8318244659e95dda1 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.miRNA-Seq.S5_L001_R1.T C3L-03735 GBM miRNA-Seq tumor CPT0264120009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAACTA_S5_L001_R1_001.unaln.bam 263228813 BAM S5_L001_R1 submitted_unaligned CPTAC3 fa531fa4-4220-40f6-8a5d-1241957f540c c0d9e90d92febf9ea2a53179e4419985 {"aliquot_tag": "ALQ_cc5162be", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.miRNA-Seq.T.hg38 C3L-03735 GBM miRNA-Seq tumor CPT0264120009 ccc75cf4-aaac-47ab-8dd1-9fb1b8e8c38a_mirnaseq_gdc_realn.bam 290946160 BAM harmonized CPTAC3 bcadc513-5cc4-4fcd-a3fc-4cd9f26e1265 ce6708b82f2dc00ec8553b99617812db {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.RNA-Seq.chimeric.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.chimeric.gdc_realn.bam 37307265 BAM chimeric harmonized CPTAC3 5131b726-cc52-4015-aea9-b521dd383c3f a359a552a2e0d8baabab651b41d0b3ca {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.RNA-Seq.genomic.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.genomic.gdc_realn.bam 8408398102 BAM genomic harmonized CPTAC3 60b2a739-6f77-4d4a-925a-4b6d1116b180 cf7fb7d922cef32f9e99e5892725940b {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.RNA-Seq.S54_L005_R1.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ S54_L005_R1 submitted_unaligned CPTAC3 fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 7a81966aa194b821b5c8a5374a282c11 {"aliquot_tag": "ALQ_cc5162be", "sample": "S54", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.RNA-Seq.S54_L005_R2.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ S54_L005_R2 submitted_unaligned CPTAC3 0552d99d-65f1-45ec-8a79-41d6de621a90 f8af80602ba31cbb4a4650e3bd6be82a {"aliquot_tag": "ALQ_cc5162be", "sample": "S54", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.RNA-Seq.transcriptome.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.transcriptome.gdc_realn.bam 9715992122 BAM transcriptome harmonized CPTAC3 5d7f1f01-1fc6-459b-ac9a-af2af0892aec e786ba92e91db72bebacf355699e76bd {"aliquot_tag": "ALQ_cc5162be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.WGS.N C3L-03735 GBM WGS blood_normal CPT0265770002 CPT0265770002.WholeGenome.RP-2158.bam 30302599855 BAM submitted_aligned CPTAC3 15654810-dd84-4d60-b564-a09430083c09 bd543e3919839303d126dc6bb82f5e66 {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03735.WGS.N.hg38 C3L-03735 GBM WGS blood_normal CPT0265770002 e7d56953-30f9-417c-9e40-1462762bea4f_wgs_gdc_realn.bam 90921510968 BAM harmonized CPTAC3 12fe818c-9d4e-47ea-b5d5-b697846bbecb bb0201c80c21f189595e46a7e18bf710 {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03735.WGS.T C3L-03735 GBM WGS tumor CPT0264120006 CPT0264120006.WholeGenome.RP-2158.bam 25957361172 BAM submitted_aligned CPTAC3 528458ab-ac6e-401f-8f36-1d58b1412a89 b72dabf1b77615c8b8107fbbed0e8e23 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.WGS.T.hg38 C3L-03735 GBM WGS tumor CPT0264120006 8cf70493-a5d8-4a66-af1d-89028cb10621_wgs_gdc_realn.bam 74067454129 BAM harmonized CPTAC3 2273e09f-c959-4216-b55b-8f39dd971741 da587998e33995b1a0f86f3d3b20dfee {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.WXS.N C3L-03735 GBM WXS blood_normal CPT0265770002 CPT0265770002.WholeExome.RP-1303.bam 24103085523 BAM submitted_aligned CPTAC3 1dc827d0-5da2-424f-be7e-b5d6b07b51b1 8f984a17a506cb3d243f1f82a504494e {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03735.WXS.N.hg38 C3L-03735 GBM WXS blood_normal CPT0265770002 e7d56953-30f9-417c-9e40-1462762bea4f_wxs_gdc_realn.bam 33186095115 BAM harmonized CPTAC3 e3e2c432-ec42-4d5c-848b-f53a31f5b494 3a708ffbb3939378d320133f651c2b6e {"aliquot_tag": "ALQ_e34ddcef", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03735.WXS.T C3L-03735 GBM WXS tumor CPT0264120006 CPT0264120006.WholeExome.RP-1303.bam 24321593437 BAM submitted_aligned CPTAC3 1a452dd6-c235-40bc-91b7-9102ecf5bd95 3e792cc544f232379d0c0dfa1b57667e {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03735.WXS.T.hg38 C3L-03735 GBM WXS tumor CPT0264120006 8cf70493-a5d8-4a66-af1d-89028cb10621_wxs_gdc_realn.bam 34460901803 BAM harmonized CPTAC3 b74b0bb2-b174-4779-9e16-0933e2fdbc02 78943ae9770ffdb292c5a348e0b66216 {"aliquot_tag": "ALQ_5cee7f2f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.MethArray.Green.T C3L-03740 GBM Methylation_Array tumor CPT0249420006 204367490043_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 26aa6189-be18-41fd-86e1-44de3bf12f60 ff900628102ef73744153e7a8229aa6c {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.MethArray.Red.T C3L-03740 GBM Methylation_Array tumor CPT0249420006 204367490043_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 54320d84-5e1a-491e-97d5-9cae1e2f84bc 692b39d4f658cf8b968543ca5664614b {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.miRNA-Seq.S38_L008_R1.T C3L-03740 GBM miRNA-Seq tumor CPT0249420013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTAGCT_S38_L008_R1_001.unaln.bam 296311765 BAM S38_L008_R1 submitted_unaligned CPTAC3 00f61c28-9d49-4409-9ba8-ad80ec422b6b d5a840abb8393cdecd2900e612d222c6 {"aliquot_tag": "ALQ_46a04def", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.miRNA-Seq.T.hg38 C3L-03740 GBM miRNA-Seq tumor CPT0249420013 15d9eea2-4c08-49f3-99e8-e7423a98396f_mirnaseq_gdc_realn.bam 327607910 BAM harmonized CPTAC3 1c4158b3-be2d-42ce-a13e-1df099134333 07f87bb4f531f7cb9486ed91a4f24b51 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.RNA-Seq.chimeric.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.chimeric.gdc_realn.bam 31599562 BAM chimeric harmonized CPTAC3 db35be7e-96f4-404c-ad98-d051de8710fb d69a581867372952c60a5fdbaf4ea334 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.RNA-Seq.genomic.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.genomic.gdc_realn.bam 8340159150 BAM genomic harmonized CPTAC3 bd934086-82fb-41e1-b001-5ce601276307 a417bb7e99c9abfaa5dcc2c3e54fb856 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.RNA-Seq.S65_L008_R1.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ S65_L008_R1 submitted_unaligned CPTAC3 545a4b63-a08b-42bf-93f8-6b9faa29e42d 12cbe468f45f06aa4977560e7ccbe952 {"aliquot_tag": "ALQ_46a04def", "sample": "S65", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.RNA-Seq.S65_L008_R2.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ S65_L008_R2 submitted_unaligned CPTAC3 04802ae4-6a8a-400d-87e5-2822568997c5 b4f97787bfe789630d545698dc81470e {"aliquot_tag": "ALQ_46a04def", "sample": "S65", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.RNA-Seq.transcriptome.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.transcriptome.gdc_realn.bam 10233605535 BAM transcriptome harmonized CPTAC3 cbeb1b04-7d2a-4c13-95be-67e56cdb44c3 856da3f9fcffc5dff40bd648640d60e6 {"aliquot_tag": "ALQ_46a04def", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.WGS.N C3L-03740 GBM WGS blood_normal CPT0250420002 CPT0250420002.WholeGenome.RP-2158.bam 21405427914 BAM submitted_aligned CPTAC3 c47ab067-c1c5-42b1-9e33-e4dc928e1a81 e2373336f47dfedaa92e136ac1ba879b {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03740.WGS.N.hg38 C3L-03740 GBM WGS blood_normal CPT0250420002 6983e835-2ae6-468a-adac-ec0464461c65_wgs_gdc_realn.bam 64109908623 BAM harmonized CPTAC3 75913059-161e-4163-8bcd-7682c8b705bd 7f97cad14161a8c7e1914e45e835afe2 {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03740.WGS.T C3L-03740 GBM WGS tumor CPT0249420006 CPT0249420006.WholeGenome.RP-2158.bam 29989797887 BAM submitted_aligned CPTAC3 2143c8e9-b69d-4741-be28-b2d942baae88 b0cecb8ab9ec2beeb1f05b4c7900c477 {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.WGS.T.hg38 C3L-03740 GBM WGS tumor CPT0249420006 5f411427-6a95-49fe-be0c-950f30692337_wgs_gdc_realn.bam 87814571471 BAM harmonized CPTAC3 1408af83-c51f-4a85-9ea5-0890c2678fce ec64674539eb1c2b8d1e6d4db44ee330 {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.WXS.N C3L-03740 GBM WXS blood_normal CPT0250420002 CPT0250420002.WholeExome.RP-1303.bam 22690999931 BAM submitted_aligned CPTAC3 74cd737d-4e4e-48a0-83b1-824bb3b13135 c22310503e3fd8ad4ac7434d1682c571 {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03740.WXS.N.hg38 C3L-03740 GBM WXS blood_normal CPT0250420002 6983e835-2ae6-468a-adac-ec0464461c65_wxs_gdc_realn.bam 31150698203 BAM harmonized CPTAC3 b3bbcc78-a7c4-4c55-99f3-829d3d394087 3d31964a854129b15c8249e67ccfa54e {"aliquot_tag": "ALQ_718e0975", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03740.WXS.T C3L-03740 GBM WXS tumor CPT0249420006 CPT0249420006.WholeExome.RP-1303.bam 19873227788 BAM submitted_aligned CPTAC3 4fe3a81b-3274-4ef3-86a8-7957912a7c87 8be2b78d8723badbc31a3bcf0ca1f608 {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03740.WXS.T.hg38 C3L-03740 GBM WXS tumor CPT0249420006 5f411427-6a95-49fe-be0c-950f30692337_wxs_gdc_realn.bam 27684153748 BAM harmonized CPTAC3 51b302f1-783a-421a-8abb-b6fbc2d8aa0f 9aeef4527ff479780da208fe5dc331cd {"aliquot_tag": "ALQ_2fd18821", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03743.MethArray.Green.A C3L-03743 PDA Methylation_Array tissue_normal CPT0264180006 203561620043_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a0b86526-3f62-471e-af2b-34ad8bcd9f70 b2fc430ea214c861a7c243814171c1e4 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.MethArray.Green.T C3L-03743 PDA Methylation_Array tumor CPT0264150009 203561450102_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 1902a272-deea-4f6d-b9f0-e2c48eafe7e2 c4bb3f625b640ecc794a1e1182647b72 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.MethArray.Red.A C3L-03743 PDA Methylation_Array tissue_normal CPT0264180006 203561620043_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 2be6a8ab-199a-4d3d-8d75-dfb59df61b67 ffc00f09a1f4f65ccdab349fa76c1304 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.MethArray.Red.T C3L-03743 PDA Methylation_Array tumor CPT0264150009 203561450102_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 b31bb769-53d1-4487-872c-e706e7df18a2 9e6843a77cb48ae82739dc22d5f9266d {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.miRNA-Seq.A.hg38 C3L-03743 PDA miRNA-Seq tissue_normal CPT0264180009 21f4763c-7ada-4fe8-9c30-7a16b3aacbb1_mirnaseq_gdc_realn.bam 195968250 BAM harmonized CPTAC3 c7adb2cd-8259-41e4-a532-3050d915da27 08591f21c8481855c010677d2925d8bf {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.miRNA-Seq.S21_L004_R1.T C3L-03743 PDA miRNA-Seq tumor CPT0264150006 190712_UNC32-K00270_0192_BH7HL3BBXY_TCATTC_S21_L004_R1_001.unaln.bam 130956878 BAM S21_L004_R1 submitted_unaligned CPTAC3 93181071-a523-4122-8886-e8b4dc6a74a3 1d3486c01257e6c5cec3e64fbc26ea65 {"aliquot_tag": "ALQ_eecea33f", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.miRNA-Seq.S32_L002_R1.A C3L-03743 PDA miRNA-Seq tissue_normal CPT0264180009 190813_UNC32-K00270_0196_AH5MCWBBXY_TTAGGC_S32_L002_R1_001.unaln.bam 172055190 BAM S32_L002_R1 submitted_unaligned CPTAC3 019bcb70-cb67-411f-a6a6-7cc795d63eaa 4f3ced6a187a8e7deebfd67941cba974 {"aliquot_tag": "ALQ_86e17a1f", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.miRNA-Seq.T.hg38 C3L-03743 PDA miRNA-Seq tumor CPT0264150006 35c4f7f6-8592-4253-8f98-0e13191d86a5_mirnaseq_gdc_realn.bam 148592559 BAM harmonized CPTAC3 8eab6531-d6cc-419a-b7f9-874e9893783b b66f78f338c041cc8efa74ef3e21b60f {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.RNA-Seq.chimeric.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.chimeric.gdc_realn.bam 40791518 BAM chimeric harmonized CPTAC3 e260b1b6-738e-4d69-b072-48a0cc970b3a a04c85ae9bf3b063079c01395f2d17ec {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.RNA-Seq.chimeric.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.chimeric.gdc_realn.bam 34614800 BAM chimeric harmonized CPTAC3 16acb084-d312-4e3b-a2e8-cd7db393f13f c6da1d4f8e27d09bbcb54d73c2770633 {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.RNA-Seq.genomic.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.genomic.gdc_realn.bam 7946778805 BAM genomic harmonized CPTAC3 2083ece5-80fe-423a-a2e8-d74a213bd144 bb7372c66034ac9bbe6444c2b44291e7 {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.RNA-Seq.genomic.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.genomic.gdc_realn.bam 8948929869 BAM genomic harmonized CPTAC3 ef2f9bd7-f152-4c7a-8ff0-e656974a00e8 17a34d211e441a14fc5e794bb5c83f28 {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.RNA-Seq.S2_L001_R1.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 4230524943 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 29514c3a-58c2-476f-a567-72ed756bf086 f1473c38a39a2fbc2bec0cafe5c6065e {"aliquot_tag": "ALQ_eecea33f", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.RNA-Seq.S2_L001_R2.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4689247891 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 8a695131-9653-4fc6-b000-281393a6e318 35ce8dfa2dee79f12ce59c53c90b9d8a {"aliquot_tag": "ALQ_eecea33f", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.RNA-Seq.S5_L002_R1.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R1_001.fastq.gz 3837391076 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 11338202-66e3-4dd0-9f5a-f2aac1b86a34 8c15eb7adedc6e14112d71e9ffffde3a {"aliquot_tag": "ALQ_86e17a1f", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.RNA-Seq.S5_L002_R2.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R2_001.fastq.gz 4110204192 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 b64a6935-7492-4441-888c-9198b4d8b738 a586c265dd63748cb93001ab8309f386 {"aliquot_tag": "ALQ_86e17a1f", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.RNA-Seq.transcriptome.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.transcriptome.gdc_realn.bam 11821138286 BAM transcriptome harmonized CPTAC3 7c8e13c0-8604-4d55-a56f-0a95cca0240e e8460cc79f02f2e35dd6e6c2ea92a5b9 {"aliquot_tag": "ALQ_86e17a1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.RNA-Seq.transcriptome.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.transcriptome.gdc_realn.bam 11902401758 BAM transcriptome harmonized CPTAC3 d1a2678d-5d08-4045-b7dc-f1f11a90c064 ce8467c8ffa23d3f3bd687562f317d2a {"aliquot_tag": "ALQ_eecea33f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.Targeted.T C3L-03743 PDA Targeted_Sequencing tumor CPT0264150009 CPT0264150009.CustomSelection.RP-1303.PDO-18786.bam 5369962012 BAM submitted_aligned CPTAC3 0a8b2187-dd03-4f75-bf7a-69faf151aebd 17d238a62a2a4f1b2e19b63c37dbe262 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.Targeted.T.hg38 C3L-03743 PDA Targeted_Sequencing tumor CPT0264150009 b7f04fb8-fcca-4fb5-ba25-3ecd6b04e03f_targetedsequencing_gdc_realn.bam 7353411127 BAM harmonized CPTAC3 9aa52545-b3ae-4884-8d76-91f0b4a7e940 04c47664cdc7d28aee90e42ab2a8d35d {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.WGS.N C3L-03743 PDA WGS blood_normal CPT0265780002 CPT0265780002.WholeGenome.RP-1303.bam 77074451038 BAM submitted_aligned CPTAC3 9755034f-800b-48ac-b2c7-f81630678a8e a9118427aad419870534b3526ed7f17b {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03743.WGS.N.hg38 C3L-03743 PDA WGS blood_normal CPT0265780002 a2e55314-1448-495b-837b-af162c8d8a50_wgs_gdc_realn.bam 116705590779 BAM harmonized CPTAC3 49f6ffb6-0d9a-4b2e-8e06-9f60f846a099 900659b16b0fa9eab70f7c50677922ee {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03743.WGS.T C3L-03743 PDA WGS tumor CPT0264150009 CPT0264150009.WholeGenome.RP-1303.bam 68168100582 BAM submitted_aligned CPTAC3 226aa390-c0e8-4d94-9797-672690a3082e 52f6ee15c43d10abdf978c7852886fee {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.WGS.T.hg38 C3L-03743 PDA WGS tumor CPT0264150009 b7f04fb8-fcca-4fb5-ba25-3ecd6b04e03f_wgs_gdc_realn.bam 97597263167 BAM harmonized CPTAC3 a512c1e7-d660-4f7f-986a-611abb267047 6b7c8b0eb5aed3a171372dc87f56ae38 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.WXS.A C3L-03743 PDA WXS tissue_normal CPT0264180006 CPT0264180006.WholeExome.RP-1303.bam 25796347412 BAM submitted_aligned CPTAC3 a13fd5a1-c9d7-4ae1-b006-332733a910fc 9d1d37bb705e3a764c52a6420a1f3571 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.WXS.A.hg38 C3L-03743 PDA WXS tissue_normal CPT0264180006 24e3af70-12c6-41e9-ae60-a6571adb1fe5_wxs_gdc_realn.bam 35738830704 BAM harmonized CPTAC3 9a003041-ff24-4dbc-b5b2-23a1e1c0bf76 5a4d522e61e96a4d599503f2f41ffe17 {"aliquot_tag": "ALQ_165e678e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03743.WXS.N C3L-03743 PDA WXS blood_normal CPT0265780002 CPT0265780002.WholeExome.RP-1303.bam 22263816785 BAM submitted_aligned CPTAC3 99e801c3-853a-4831-9765-59a49062bb06 6560fb063cdbe63716af3e546534cd19 {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03743.WXS.N.hg38 C3L-03743 PDA WXS blood_normal CPT0265780002 a2e55314-1448-495b-837b-af162c8d8a50_wxs_gdc_realn.bam 30695064012 BAM harmonized CPTAC3 26620c71-1c71-4a22-9fbd-184e12a51cc8 fb276fd78f497eb2c96394e9acd51d08 {"aliquot_tag": "ALQ_611d4b3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03743.WXS.T C3L-03743 PDA WXS tumor CPT0264150009 CPT0264150009.WholeExome.RP-1303.bam 47732413616 BAM submitted_aligned CPTAC3 365a30bc-16e2-4348-9b4e-43ba4c1cefbe dfc63d8784dc4bdaab02fc34206e5fb4 {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03743.WXS.T.hg38 C3L-03743 PDA WXS tumor CPT0264150009 b7f04fb8-fcca-4fb5-ba25-3ecd6b04e03f_wxs_gdc_realn.bam 67407961538 BAM harmonized CPTAC3 ab626169-f41c-4532-925b-e2860bf46e06 60b48774eeef0ef72d3737ab2256785e {"aliquot_tag": "ALQ_7e71beae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.MethArray.Green.T C3L-03744 GBM Methylation_Array tumor CPT0216920011 203219650221_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7d85f977-59ab-4262-90c3-55d76f360b27 f601ebcde8acea29e44a2b27b6676d3c {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.MethArray.Red.T C3L-03744 GBM Methylation_Array tumor CPT0216920011 203219650221_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 77076017-0be4-4b89-8d08-c21e41596d5e b27c1b0f8632a580742347cd575f6327 {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.miRNA-Seq.S30_L002_R1.T C3L-03744 GBM miRNA-Seq tumor CPT0216920018 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGAAA_S30_L002_R1_001.unaln.bam 226411237 BAM S30_L002_R1 submitted_unaligned CPTAC3 b7de4c30-15fa-4077-a781-789517a2befe 3ba869b4f613320eac770eb74a8a900b {"aliquot_tag": "ALQ_d344f934", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.miRNA-Seq.T.hg38 C3L-03744 GBM miRNA-Seq tumor CPT0216920018 2c396bc8-3c21-45a5-b729-c99ed50f5d16_mirnaseq_gdc_realn.bam 249307601 BAM harmonized CPTAC3 f3a74518-cb55-435b-a6d1-f7a41de5e1f5 5bc43ded9df34fd94ffe1a01e5eaac7b {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.RNA-Seq.chimeric.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.chimeric.gdc_realn.bam 66303586 BAM chimeric harmonized CPTAC3 75205d0a-44e2-4312-a319-54aa959dcb0a 5fb6517108070175a9cafef191230706 {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.RNA-Seq.genomic.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.genomic.gdc_realn.bam 10476268031 BAM genomic harmonized CPTAC3 9bfda417-45a0-47a3-bbd3-bc1d6c576a5f 70b9deb829ebe2f11d7f57be78040108 {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.RNA-Seq.S1_L001_R1.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4858139330 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 035f8110-bb22-4229-9d3b-0dd4da238606 29edd6ed04384f8a45d1011f681794b7 {"aliquot_tag": "ALQ_d344f934", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.RNA-Seq.S1_L001_R2.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 5409623564 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 42993232-1d7f-4def-9b3a-811428825733 c77abbcfdcb06f7b365d1a373582519b {"aliquot_tag": "ALQ_d344f934", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.RNA-Seq.transcriptome.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.transcriptome.gdc_realn.bam 11593582703 BAM transcriptome harmonized CPTAC3 27434d76-9d24-4197-833e-8c23ec115083 abfc8c1f67cb965de48bfd23bf85070a {"aliquot_tag": "ALQ_d344f934", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.WGS.N C3L-03744 GBM WGS blood_normal CPT0217940002 CPT0217940002.WholeGenome.RP-1303.bam 52411466113 BAM submitted_aligned CPTAC3 14d128b3-9403-40f4-870a-38bcad05e52d 7cc12f1884ae0af27f38036ad7fe6600 {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03744.WGS.N.hg38 C3L-03744 GBM WGS blood_normal CPT0217940002 3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wgs_gdc_realn.bam 76421878020 BAM harmonized CPTAC3 28786672-2983-417e-9c3f-32b2a8e7e114 be48f5ea8e14ec82a0cc0274fe0db4fc {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03744.WGS.T C3L-03744 GBM WGS tumor CPT0216920011 CPT0216920011.WholeGenome.RP-1303.bam 67876448704 BAM submitted_aligned CPTAC3 e602e2df-7f77-4fa9-8c60-ece16deea396 af27334d545b2c82327e2487ac464308 {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.WGS.T.hg38 C3L-03744 GBM WGS tumor CPT0216920011 b291d9bd-e99f-427c-a1d9-730d69d55a57_wgs_gdc_realn.bam 101148486261 BAM harmonized CPTAC3 603495d3-0a81-4668-a1c8-74a5bbbe8c6b 3cb6e7781f657197a729d922df6a0d8f {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.WXS.N C3L-03744 GBM WXS blood_normal CPT0217940002 CPT0217940002.WholeExome.RP-1303.bam 22729890191 BAM submitted_aligned CPTAC3 b2b4c5ad-f6f0-4027-b378-8e4115e9b6a9 f2fb6224e70de11780e1c59b5c00dbcf {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03744.WXS.N.hg38 C3L-03744 GBM WXS blood_normal CPT0217940002 3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wxs_gdc_realn.bam 31883747501 BAM harmonized CPTAC3 f068a4d6-f1c5-45bd-800d-d234245fcb1d 2158208dc2861f2763cc24582bff9959 {"aliquot_tag": "ALQ_3bddf7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03744.WXS.T C3L-03744 GBM WXS tumor CPT0216920011 CPT0216920011.WholeExome.RP-1303.bam 26906470146 BAM submitted_aligned CPTAC3 227d0648-896b-4b18-82e7-1f38ba950fd9 91454bcd73f6e99d7d2a1c3e835d89d0 {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03744.WXS.T.hg38 C3L-03744 GBM WXS tumor CPT0216920011 b291d9bd-e99f-427c-a1d9-730d69d55a57_wxs_gdc_realn.bam 36528897933 BAM harmonized CPTAC3 0ebf439e-c9b4-46d7-861e-bf93ee8330c7 92953e0342d3daab72a4e37463a8f83e {"aliquot_tag": "ALQ_aa984190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03747.MethArray.Green.T C3L-03747 GBM Methylation_Array tumor CPT0217000007 203219650003_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 714701b1-984e-4287-9fba-8483809fcbe4 c6c856f3b1332b5aac749e138d4c4bdf {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.MethArray.Red.T C3L-03747 GBM Methylation_Array tumor CPT0217000007 203219650003_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 35fc7daa-b47d-4e94-a84d-6a0ca19ea63a 8753daf45c4870c7c0d7576143d2f005 {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.miRNA-Seq.S20_L008_R1.T C3L-03747 GBM miRNA-Seq tumor CPT0217000010 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L008_R1_001.unaln.bam 320312897 BAM S20_L008_R1 submitted_unaligned CPTAC3 7f8f5031-f0e4-48c8-a165-2711ddb05ac8 b7aca08371ee32fef62c4eb069bfb7d3 {"aliquot_tag": "ALQ_2627781a", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.miRNA-Seq.T.hg38 C3L-03747 GBM miRNA-Seq tumor CPT0217000010 842a216e-1e11-4a5e-a86b-e487872b6620_mirnaseq_gdc_realn.bam 373730804 BAM harmonized CPTAC3 fb7abda3-db8a-4d23-a40c-446af174df59 ad731a4793b9896b8a131f7b1f15eb02 {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.RNA-Seq.chimeric.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.chimeric.gdc_realn.bam 27567734 BAM chimeric harmonized CPTAC3 fc8cb01a-0022-4afe-b78b-09e2586031a7 15d293b8f5e94ce312598c1422b0ac1a {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.RNA-Seq.genomic.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.genomic.gdc_realn.bam 8271693915 BAM genomic harmonized CPTAC3 7fb6de1b-c78d-4c2d-9853-2485033cdb0b 1cb92cb41b64bda53de96eba96226fc1 {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.RNA-Seq.S8_L006_R1.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R1_001.fastq.gz 3582139637 FASTQ S8_L006_R1 submitted_unaligned CPTAC3 a901792d-b393-486f-bc02-850fb27a7f25 8826e2068168c0ecf41418e2c2737f24 {"aliquot_tag": "ALQ_2627781a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.RNA-Seq.S8_L006_R2.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R2_001.fastq.gz 3910029087 FASTQ S8_L006_R2 submitted_unaligned CPTAC3 883fce4d-a898-4223-9001-b7d58f416fbc 0d5943092e039c31960eec72cfec063b {"aliquot_tag": "ALQ_2627781a", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.RNA-Seq.transcriptome.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.transcriptome.gdc_realn.bam 10741855723 BAM transcriptome harmonized CPTAC3 79b77ade-a6aa-472c-8287-ec15ef5a5f78 e448a28a2dab91176303eda64bfe9cac {"aliquot_tag": "ALQ_2627781a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.WGS.N C3L-03747 GBM WGS blood_normal CPT0217980002 CPT0217980002.WholeGenome.RP-1303.bam 58431032661 BAM submitted_aligned CPTAC3 669b9a17-1536-4600-8ed0-919981faa134 f91c93f09f647c87de6300e1a931b6ad {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03747.WGS.N.hg38 C3L-03747 GBM WGS blood_normal CPT0217980002 388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wgs_gdc_realn.bam 84283984691 BAM harmonized CPTAC3 f060af66-6986-4c8b-be4f-29950061dabb b81bcfba69849e6ab990371c9b00d570 {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03747.WGS.T C3L-03747 GBM WGS tumor CPT0217000007 CPT0217000007.WholeGenome.RP-1303.bam 64562644816 BAM submitted_aligned CPTAC3 d9c30c2f-9f9d-4903-8d15-831dfcd62ba9 609b70af2265950cd3f13f68deca97dd {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.WGS.T.hg38 C3L-03747 GBM WGS tumor CPT0217000007 22d36fbd-33f1-4d30-a20e-a3f59330c5fa_wgs_gdc_realn.bam 94170173043 BAM harmonized CPTAC3 ab83eaed-187a-4bb1-ad5c-a8e8c03828cc 73a781e562ca5e7e6e667f22b287045e {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.WXS.N C3L-03747 GBM WXS blood_normal CPT0217980002 CPT0217980002.WholeExome.RP-1303.bam 25730670462 BAM submitted_aligned CPTAC3 959e6132-d19a-4f98-8e2e-684c54740550 43ca1b19811bd1760923660294b1471e {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03747.WXS.N.hg38 C3L-03747 GBM WXS blood_normal CPT0217980002 388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wxs_gdc_realn.bam 35226285252 BAM harmonized CPTAC3 fd2385b8-fa91-4b20-ba21-8f923c27d77e 6c1c2dca0a445f709e9eb83b042dcad1 {"aliquot_tag": "ALQ_c64d327e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03747.WXS.T C3L-03747 GBM WXS tumor CPT0217000007 CPT0217000007.WholeExome.RP-1303.bam 23822732763 BAM submitted_aligned CPTAC3 130ad4ce-1be2-4293-aacc-4cf4cbcc4deb 6810452252d7faf78540e6183d6dad8a {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03747.WXS.T.hg38 C3L-03747 GBM WXS tumor CPT0217000007 22d36fbd-33f1-4d30-a20e-a3f59330c5fa_wxs_gdc_realn.bam 33063299390 BAM harmonized CPTAC3 6c189a6f-a22d-4f67-9644-822db2009f79 4ec6546df0ade747c0700b5993ef22b3 {"aliquot_tag": "ALQ_a158dcf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03748.MethArray.Green.T C3L-03748 GBM Methylation_Array tumor CPT0217060006 203219670054_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3a0f27a7-d5dc-45ca-bc73-0fd99da542d1 88057c868b1ab911a27124953afb544e {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.MethArray.Red.T C3L-03748 GBM Methylation_Array tumor CPT0217060006 203219670054_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 ca88ff06-722b-4ad0-9a5e-fab26ee22f7e 453ebf066892eb25b1b86f80cdab47bd {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.miRNA-Seq.S21_L008_R1.T C3L-03748 GBM miRNA-Seq tumor CPT0217060009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L008_R1_001.unaln.bam 167942884 BAM S21_L008_R1 submitted_unaligned CPTAC3 5a094f18-c348-41ff-9a5f-1fe453d25068 9969bbcfbc4968b9233e3c38dc1cbcd6 {"aliquot_tag": "ALQ_c9a0045f", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.miRNA-Seq.T.hg38 C3L-03748 GBM miRNA-Seq tumor CPT0217060009 36b0df4c-c20d-41ee-8154-611bd9420c34_mirnaseq_gdc_realn.bam 191577584 BAM harmonized CPTAC3 4678586a-33fa-4231-8b73-086f42a8d409 a7eae72a1037d6337275b51122ecd8e7 {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.RNA-Seq.chimeric.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.chimeric.gdc_realn.bam 33115368 BAM chimeric harmonized CPTAC3 595892a1-5e21-4e29-a2bd-4ae6270c1e21 846deaca8db4c6d3fc0b9620523a777f {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.RNA-Seq.genomic.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.genomic.gdc_realn.bam 8047579525 BAM genomic harmonized CPTAC3 29dadf29-9b6f-48b5-a1f4-0a7e4d6df773 8dfaa2a68f3ca27c4e580b228167d6f9 {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.RNA-Seq.S7_L006_R1.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R1_001.fastq.gz 3796424609 FASTQ S7_L006_R1 submitted_unaligned CPTAC3 f45eae70-fb91-4be8-b800-b75f57fad8c5 bb4429ba85efbb77869321ab2f6e08ea {"aliquot_tag": "ALQ_c9a0045f", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.RNA-Seq.S7_L006_R2.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R2_001.fastq.gz 3969682675 FASTQ S7_L006_R2 submitted_unaligned CPTAC3 02d3fcaa-2a96-4d16-b3c8-7c95b195ea82 b0a4c84c39c3faa0404969a6c1848317 {"aliquot_tag": "ALQ_c9a0045f", "sample": "S7", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.RNA-Seq.transcriptome.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.transcriptome.gdc_realn.bam 11819726876 BAM transcriptome harmonized CPTAC3 145171d1-7a4f-4599-b749-350c074cb542 daa7cb35a3a8a9d16e2473e51e8737cc {"aliquot_tag": "ALQ_c9a0045f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.WGS.N C3L-03748 GBM WGS blood_normal CPT0218000002 CPT0218000002.WholeGenome.RP-1303.bam 57762347417 BAM submitted_aligned CPTAC3 970c43de-36e6-416f-ba5d-86278b80511c 85be68107439cada39079bf723b20973 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03748.WGS.N.hg38 C3L-03748 GBM WGS blood_normal CPT0218000002 cedd1569-11a3-49f4-a54c-36f18c88e15b_wgs_gdc_realn.bam 83504601495 BAM harmonized CPTAC3 ad507579-6e47-4698-aa55-5d47304df7dd ea795479d0abd0416c3e4de48866d091 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03748.WGS.T C3L-03748 GBM WGS tumor CPT0217060006 CPT0217060006.WholeGenome.RP-1303.bam 54717459819 BAM submitted_aligned CPTAC3 8645169e-b3b8-4fa6-9df6-e6297edaa00e 87a8025573ec03b1da5a6fafd49dfb40 {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.WGS.T.hg38 C3L-03748 GBM WGS tumor CPT0217060006 9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wgs_gdc_realn.bam 79848899956 BAM harmonized CPTAC3 330758b2-97f5-4111-a2b1-b80145713d3c 6792d64a519f5a545509c24eb402e532 {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.WXS.N C3L-03748 GBM WXS blood_normal CPT0218000002 CPT0218000002.WholeExome.RP-1303.bam 29923040072 BAM submitted_aligned CPTAC3 b30d60d8-a7fd-4c86-b014-89ecbea963bb 9ea85e662707293a142d2df49540b0d8 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03748.WXS.N.hg38 C3L-03748 GBM WXS blood_normal CPT0218000002 cedd1569-11a3-49f4-a54c-36f18c88e15b_wxs_gdc_realn.bam 42135220830 BAM harmonized CPTAC3 fd813224-f411-40be-93fd-86d17ba90dd1 25fe63c6258a6adc45cd7178d8b3db98 {"aliquot_tag": "ALQ_277a589e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03748.WXS.T C3L-03748 GBM WXS tumor CPT0217060006 CPT0217060006.WholeExome.RP-1303.bam 21251285282 BAM submitted_aligned CPTAC3 b61146b2-df6a-446f-90c6-88c5bcf452a2 22bfaf5504beb70d6d1b8444f27104dc {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03748.WXS.T.hg38 C3L-03748 GBM WXS tumor CPT0217060006 9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wxs_gdc_realn.bam 28933196213 BAM harmonized CPTAC3 e3fb355d-984d-41bf-a279-5464c72171e7 168571be72739a1986a7e8cf746babd5 {"aliquot_tag": "ALQ_591f19ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.MethArray.Green.A C3L-03961 LSCC Methylation_Array tissue_normal CPT0232690006 203219640172_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b3f8f61a-5ab9-4b90-8473-e11d9709de25 345753241e75cd0b2cd932c2924eb28d {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.MethArray.Green.T C3L-03961 LSCC Methylation_Array tumor CPT0232670006 203219650157_R08C01_Grn.idat 13676227 IDAT Green NA CPTAC3 e38dc99d-8c61-4740-b897-a4dda1e6064b 7199e0bcbcc2613344735064f9f60fd1 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.MethArray.Red.A C3L-03961 LSCC Methylation_Array tissue_normal CPT0232690006 203219640172_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 52fb1682-bc97-48a4-ad27-9bc1d3e9327e a840de770322a733189aff4def84df80 {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.MethArray.Red.T C3L-03961 LSCC Methylation_Array tumor CPT0232670006 203219650157_R08C01_Red.idat 13676227 IDAT Red NA CPTAC3 0c03a3de-ba15-4907-8500-fdb97b469889 3b09e45bc4f2ad622c0c50490b7332a8 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.miRNA-Seq.A.hg38 C3L-03961 LSCC miRNA-Seq tissue_normal CPT0232690009 108e3a58-34a4-4061-a7eb-8748d095adcc_mirnaseq_gdc_realn.bam 195088072 BAM harmonized CPTAC3 6d6a2cff-ea1f-4c71-9f81-ccdb2dc9990b 4111778d9bf872c6bc0e4542e3a0eeee {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.miRNA-Seq.S17_L005_R1.A C3L-03961 LSCC miRNA-Seq tissue_normal CPT0232690009 190206_UNC31-K00269_0191_AH2WY5BBXY_CATGGC_S17_L005_R1_001.unaln.bam 171764705 BAM S17_L005_R1 submitted_unaligned CPTAC3 bed8c680-6faa-4715-9ca2-b257d31ba992 c9b4a436929a52677c8fb9e44b339452 {"aliquot_tag": "ALQ_8db45849", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.miRNA-Seq.S36_L004_R1.T C3L-03961 LSCC miRNA-Seq tumor CPT0232670009 190206_UNC31-K00269_0191_AH2WY5BBXY_AGTCAA_S36_L004_R1_001.unaln.bam 185363128 BAM S36_L004_R1 submitted_unaligned CPTAC3 0e14525a-b29b-49c7-9f67-f499e25f487a 4ca0007bc0ab08adca8de12f3a3f3928 {"aliquot_tag": "ALQ_3284e628", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.miRNA-Seq.T.hg38 C3L-03961 LSCC miRNA-Seq tumor CPT0232670009 5645a19b-cae5-4734-870b-bede7805921e_mirnaseq_gdc_realn.bam 208010996 BAM harmonized CPTAC3 30e6a55d-70c9-4538-9777-9aa14f98e7b3 b8e9ef81bf3d67bc9857d3491cd13576 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_75249cf8.miRNA-Seq.S44_L002_R1.T C3L-03961 LSCC miRNA-Seq tumor CPT0232640009 190508_UNC31-K00269_0215_BH7FYKBBXY_TATAAT_S44_L002_R1_001.unaln.bam 226095721 BAM S44_L002_R1 submitted_unaligned CPTAC3 740d37e8-f7a4-47ee-91ac-9981cc53682b 46161bbb7cd966c458cfaed2ec2cddae {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_75249cf8.miRNA-Seq.T.hg38 C3L-03961 LSCC miRNA-Seq tumor CPT0232640009 85d5ed0a-712a-4eb8-be3b-2eb91d8c577e_mirnaseq_gdc_realn.bam 257204134 BAM harmonized CPTAC3 86f70ae8-27b8-4c45-a417-338741ebf733 7a1965c3dbc82fc0bb494d6d65b61fb0 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_75249cf8.RNA-Seq.chimeric.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.chimeric.gdc_realn.bam 32035473 BAM chimeric harmonized CPTAC3 69b01779-3522-46f1-9eea-5d362426a306 409fcaee29a61157e728362716dcd02c {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_75249cf8.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.genomic.gdc_realn.bam 8245589179 BAM genomic harmonized CPTAC3 dc7401ba-cd0c-418a-9b7d-cb3d20011f82 cdf66b3ee672bac718951dc5394a4ceb {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_75249cf8.RNA-Seq.S26_L007_R1.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R1_001.fastq.gz 3927636537 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 ba4d2ef4-56f6-4f5b-a4b8-994751624d3d 2ed32e0673882760b3c399b8c17f1f53 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_75249cf8.RNA-Seq.S26_L007_R2.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R2_001.fastq.gz 4480904348 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 b1cb4e71-5736-4e37-9529-47023207e048 1b639ead56f342c407ea3390b3c0f6a1 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_75249cf8.RNA-Seq.transcriptome.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.transcriptome.gdc_realn.bam 10334044777 BAM transcriptome harmonized CPTAC3 29767c57-aefe-4cb0-91d9-0e2308684fa0 0f312a4fc007287c5cb73d264038e4f4 {"aliquot_tag": "REP_75249cf8", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_e59b8169.MethArray.Green.T C3L-03961 LSCC Methylation_Array tumor CPT0232640006 203561620008_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3e7670e5-a1b6-4311-b9f9-66c0888e11e6 81b7f14f5f8037cf8b60a009a109fca4 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_e59b8169.MethArray.Red.T C3L-03961 LSCC Methylation_Array tumor CPT0232640006 203561620008_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 f57df523-6bda-435b-9771-0e640833c40b a8697fa7694bb0c41aa7586142eacd0f {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_e59b8169.WGS.T C3L-03961 LSCC WGS tumor CPT0232640006 CPT0232640006.WholeGenome.RP-1303.bam 70426544869 BAM submitted_aligned CPTAC3 9dddfa8a-ecc5-4dd8-9201-29841cf6afab 8eec59243fe148e575be67cc51cd9905 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_e59b8169.WGS.T.hg38 C3L-03961 LSCC WGS tumor CPT0232640006 3610bec5-9fcf-4587-8898-7af65b5599ce_wgs_gdc_realn.bam 100998187010 BAM harmonized CPTAC3 57467653-a720-43e9-b99b-da8a504a5bb7 a94b8b806142b5249ada5ef778ea3c9e {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_e59b8169.WXS.T C3L-03961 LSCC WXS tumor CPT0232640006 CPT0232640006.WholeExome.RP-1303.bam 25059779985 BAM submitted_aligned CPTAC3 fa72b544-9148-4039-91b6-e2036467c1c0 43a4447e4081b8b4fa3bfc007a264889 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.REP_e59b8169.WXS.T.hg38 C3L-03961 LSCC WXS tumor CPT0232640006 3610bec5-9fcf-4587-8898-7af65b5599ce_wxs_gdc_realn.bam 35196222802 BAM harmonized CPTAC3 dfaf297d-c282-4eeb-8e2c-9f67d9c13b01 d88e70bf9ecb351572d149d7982d5046 {"aliquot_tag": "REP_e59b8169", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.RNA-Seq.chimeric.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.chimeric.gdc_realn.bam 119727443 BAM chimeric harmonized CPTAC3 ca8d6c8d-14ce-4750-92a7-084197b1b97a ca9e6e5446bc571dd5ffcded727f5083 {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.RNA-Seq.chimeric.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.chimeric.gdc_realn.bam 165584581 BAM chimeric harmonized CPTAC3 11aa20e3-e67a-40b6-9617-22dc2b18e457 95851d7592704914509af90652a265c8 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.RNA-Seq.genomic.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.genomic.gdc_realn.bam 9149910418 BAM genomic harmonized CPTAC3 34fa5c6a-5419-4487-a11a-b0786970d91e 9a72ccf39ebfef85e91420783bd71ca3 {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.genomic.gdc_realn.bam 8970931712 BAM genomic harmonized CPTAC3 3c20c47a-db1f-4212-b72f-e549e6635ada 452937303ab80ec6dd023e5d9d845499 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.RNA-Seq.S2_L007_R1.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 4461119091 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 f05b42a3-d863-44c6-977b-2b06cd34fc19 d90ed3d560552ef8eca3e6e10e39fa72 {"aliquot_tag": "ALQ_8db45849", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.RNA-Seq.S2_L007_R2.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 4968859911 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 21c373d0-fde0-495e-8052-71de8db49d16 d2cbec6e154a268ecaf742ea9dd2fb37 {"aliquot_tag": "ALQ_8db45849", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.RNA-Seq.S6_L002_R1.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R1_001.fastq.gz 4028566384 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 0fb41a04-a113-43f8-bf41-3ebfeaa16b15 b9fbf8698eed600c4f151391333fd93b {"aliquot_tag": "ALQ_3284e628", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.RNA-Seq.S6_L002_R2.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R2_001.fastq.gz 4378573275 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 52c04f81-ce8a-4377-bfd3-4c4bb0c2400a d28049aa8729a0249fafde2c80550945 {"aliquot_tag": "ALQ_3284e628", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.RNA-Seq.transcriptome.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.transcriptome.gdc_realn.bam 10497272515 BAM transcriptome harmonized CPTAC3 8ab77529-a285-4b82-9f7d-3bee62251696 2fd79f11256f1f23cf9419dbacf5e4cd {"aliquot_tag": "ALQ_8db45849", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.RNA-Seq.transcriptome.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.transcriptome.gdc_realn.bam 9202700260 BAM transcriptome harmonized CPTAC3 54fe5f8f-26d4-4aa8-9e31-5b6491d1fd8f a03c50afe787b3e30b5eb917c28e29a2 {"aliquot_tag": "ALQ_3284e628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.WGS.N C3L-03961 LSCC WGS blood_normal CPT0232790002 CPT0232790002.WholeGenome.RP-1303.bam 56167827193 BAM submitted_aligned CPTAC3 544d8452-b929-4ccf-8549-cc6e4fd538af f94dd472492a16e9343ed5fae782e265 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03961.WGS.N.hg38 C3L-03961 LSCC WGS blood_normal CPT0232790002 dec7ca10-fdd0-4772-9083-99eb76cada5a_wgs_gdc_realn.bam 80586310895 BAM harmonized CPTAC3 5330bea7-b3fe-45b7-9078-1a99f80b2157 351564d652e783f01015357577e7d5b5 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03961.WGS.T C3L-03961 LSCC WGS tumor CPT0232670006 CPT0232670006.WholeGenome.RP-1303.bam 67575734614 BAM submitted_aligned CPTAC3 b49cb4b7-3c9b-45fe-ab8e-6fe4b4c050cd c33ac5b3408ceed7814e3484bd842095 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.WGS.T.hg38 C3L-03961 LSCC WGS tumor CPT0232670006 be4f00b4-d05d-4ad9-a26a-cfb747526f9d_wgs_gdc_realn.bam 99628225275 BAM harmonized CPTAC3 6f42471c-c15b-48ca-8c9e-416365913a68 3fb1576762555eb259fd166d02269f54 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.WXS.A C3L-03961 LSCC WXS tissue_normal CPT0232690006 CPT0232690006.WholeExome.RP-1303.bam 25075624618 BAM submitted_aligned CPTAC3 8e9a0757-992b-46bd-ba4b-943b48646b85 1e30e053003d31c9c40ec4108a0d29f0 {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.WXS.A.hg38 C3L-03961 LSCC WXS tissue_normal CPT0232690006 0b891746-b74c-4d72-ac79-b4f385c34f54_wxs_gdc_realn.bam 34877308328 BAM harmonized CPTAC3 b452c909-bc0e-4c55-a50f-49f96b91a0a0 a3dc708e7fd688bba2e7db313d7c2c8d {"aliquot_tag": "ALQ_1d0b45d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03961.WXS.N C3L-03961 LSCC WXS blood_normal CPT0232790002 CPT0232790002.WholeExome.RP-1303.bam 24451977536 BAM submitted_aligned CPTAC3 8ebe01e0-1515-46cf-b690-e2742cf113be 3bc6d1f02a5ecda64d5bac2e1b1a30e6 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03961.WXS.N.hg38 C3L-03961 LSCC WXS blood_normal CPT0232790002 dec7ca10-fdd0-4772-9083-99eb76cada5a_wxs_gdc_realn.bam 33319536001 BAM harmonized CPTAC3 4ad060d2-2819-4203-8e6c-92041543ab83 ce66852defa42082012b207a1b9afd17 {"aliquot_tag": "ALQ_d13a5264", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03961.WXS.T C3L-03961 LSCC WXS tumor CPT0232670006 CPT0232670006.WholeExome.RP-1303.bam 21760809510 BAM submitted_aligned CPTAC3 cfaaad4a-ab03-496d-a1bb-3a43654fa5df ffe192405ed641ae26e6964d67e1bd47 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03961.WXS.T.hg38 C3L-03961 LSCC WXS tumor CPT0232670006 be4f00b4-d05d-4ad9-a26a-cfb747526f9d_wxs_gdc_realn.bam 30127197737 BAM harmonized CPTAC3 07aaaf88-344a-4b44-b7ff-d160940d5dbc d11597f0f1f65121bd3b756bf2ef84e3 {"aliquot_tag": "ALQ_a23bfbb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.MethArray.Green.A C3L-03962 LSCC Methylation_Array tissue_normal CPT0233160006 203219650176_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4e88b7ac-1db6-4925-b29c-f711de8c48be 992ea1f4217521c5fff78ccf7bcd4ad7 {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.MethArray.Green.T C3L-03962 LSCC Methylation_Array tumor CPT0233120006 203219750071_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 39b97d0b-f1a2-4cfc-bd46-901ef8ef1396 8952abdaaa2f7bf25013382a2c5886a4 {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.MethArray.Red.A C3L-03962 LSCC Methylation_Array tissue_normal CPT0233160006 203219650176_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 ae73dc70-a418-471d-b658-9697d6e5e6df 3b6ae4406861e6159b07a4ae2923c8d0 {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.MethArray.Red.T C3L-03962 LSCC Methylation_Array tumor CPT0233120006 203219750071_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 39c5353f-5758-490e-931c-525638046475 6385011768f8546523449266c04737cb {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.miRNA-Seq.A.hg38 C3L-03962 LSCC miRNA-Seq tissue_normal CPT0233160009 8d8badbb-d87c-4feb-99a8-9ccf5943e87d_mirnaseq_gdc_realn.bam 245883161 BAM harmonized CPTAC3 cd7d04ee-bbed-4032-ba74-27119046b502 8fd86e021b4629a90499891031c90a84 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.miRNA-Seq.S16_L005_R1.A C3L-03962 LSCC miRNA-Seq tissue_normal CPT0233160009 190206_UNC31-K00269_0191_AH2WY5BBXY_CATTTT_S16_L005_R1_001.unaln.bam 216106182 BAM S16_L005_R1 submitted_unaligned CPTAC3 bdb74aa6-a8dd-4ab2-bac6-e5de9a502cc3 dbe026c75941ecb4290aabcefa5fe366 {"aliquot_tag": "ALQ_b496f494", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.miRNA-Seq.S6_L007_R1.T C3L-03962 LSCC miRNA-Seq tumor CPT0233120013 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L007_R1_001.unaln.bam 268366156 BAM S6_L007_R1 submitted_unaligned CPTAC3 f1f73d81-302b-4917-8924-a96db2776e15 2b1d9607e097437467f3555cba378feb {"aliquot_tag": "ALQ_b8d88a0b", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.miRNA-Seq.T.hg38 C3L-03962 LSCC miRNA-Seq tumor CPT0233120013 bcc6a9c0-d52a-4624-8503-22788ff5978a_mirnaseq_gdc_realn.bam 309254156 BAM harmonized CPTAC3 9476f204-20d8-47cf-915d-b083ab6ca3fa 9cd89e52967d5411dec305f8984d8840 {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.RNA-Seq.chimeric.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.chimeric.gdc_realn.bam 235978957 BAM chimeric harmonized CPTAC3 7643568f-6dd5-453d-abc4-ef33ba0e45fd 7213a1c2fb83c0ea88b167cb8ac74b32 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.RNA-Seq.chimeric.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.chimeric.gdc_realn.bam 44312940 BAM chimeric harmonized CPTAC3 b84d9f1d-51ba-4320-88af-a9d1f4a538ab 0537a56964ee69e7c4f9a350100a098d {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.RNA-Seq.genomic.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.genomic.gdc_realn.bam 8794069178 BAM genomic harmonized CPTAC3 90f800e5-a6e6-4d5b-9a15-c97d197fe0c5 f304e56f3c919490b385fe0f3ad8a916 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.RNA-Seq.genomic.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.genomic.gdc_realn.bam 7792828844 BAM genomic harmonized CPTAC3 d79541eb-5118-413f-81b2-e897f48a6b4d bee78697c8d571a4366af45b89e01ce2 {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.RNA-Seq.S1_L007_R1.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4038869253 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 52fe8d29-0a32-48e6-8eb8-6a211ad92dd2 6b434fdc241c5884367468746843bcb8 {"aliquot_tag": "ALQ_b496f494", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.RNA-Seq.S1_L007_R2.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 4676819767 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 2dc6445a-ed6b-4fbf-a422-ba9160d8b4cb 8c2ff5d70b37643dd4c14ed538d7823f {"aliquot_tag": "ALQ_b496f494", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.RNA-Seq.S5_L003_R1.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R1_001.fastq.gz 3676621657 FASTQ S5_L003_R1 submitted_unaligned CPTAC3 5e947edc-8cd1-4c9f-8b71-98f9ea49486b 7e8a42bbd284dcee8b347b26af635c69 {"aliquot_tag": "ALQ_b8d88a0b", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.RNA-Seq.S5_L003_R2.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R2_001.fastq.gz 4012712752 FASTQ S5_L003_R2 submitted_unaligned CPTAC3 d167e9a0-245c-4a57-86c8-4ca980bcbf85 d423379e5c71af8a1839979c59da7165 {"aliquot_tag": "ALQ_b8d88a0b", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.RNA-Seq.transcriptome.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.transcriptome.gdc_realn.bam 9320059759 BAM transcriptome harmonized CPTAC3 30227a44-bdf4-4f8a-b2bf-b099a6f0fff0 a4b24fec49b7a1660011bd2e815236f1 {"aliquot_tag": "ALQ_b496f494", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.RNA-Seq.transcriptome.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.transcriptome.gdc_realn.bam 9064182470 BAM transcriptome harmonized CPTAC3 c408b2f2-aa85-43c8-8bb5-455b49ebb9cd 4d5495129ec2cd28e15b2c6204f267bd {"aliquot_tag": "ALQ_b8d88a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.WGS.N C3L-03962 LSCC WGS blood_normal CPT0233260002 CPT0233260002.WholeGenome.RP-1303.bam 70978416034 BAM submitted_aligned CPTAC3 22892109-211c-4f97-860b-e36236fbc2fd 40fefb8356374a18a6e5779a2362f9c8 {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03962.WGS.N.hg38 C3L-03962 LSCC WGS blood_normal CPT0233260002 02e2349f-c2ee-479c-81e2-1ce03fb3485e_wgs_gdc_realn.bam 105084569419 BAM harmonized CPTAC3 5b1df6c8-e378-4d45-91e0-142ad3ee7a87 1f818bcc7b320c14b3f1308be763f049 {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03962.WGS.T C3L-03962 LSCC WGS tumor CPT0233120006 CPT0233120006.WholeGenome.RP-1303.bam 53048643458 BAM submitted_aligned CPTAC3 1d9f35f4-add9-42d2-9802-ba454573ad03 9c396147517ae623706c900fc42c2231 {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.WGS.T.hg38 C3L-03962 LSCC WGS tumor CPT0233120006 fa7582c9-d7a9-42d8-8fe2-e358ef604ee8_wgs_gdc_realn.bam 78199008186 BAM harmonized CPTAC3 f451a309-b730-4310-a594-27fa3985549e c45320818e3b3bdad441d47cd9fdc4df {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.WXS.A C3L-03962 LSCC WXS tissue_normal CPT0233160006 CPT0233160006.WholeExome.RP-1303.bam 21432316097 BAM submitted_aligned CPTAC3 c8d6e342-80d8-41ac-b850-44bcdb7ebefd ec8f78eaa15069ffda0c89dfccf93ecd {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.WXS.A.hg38 C3L-03962 LSCC WXS tissue_normal CPT0233160006 e07770f4-d62b-47a6-a06a-40c4cb55c429_wxs_gdc_realn.bam 30226593969 BAM harmonized CPTAC3 d52111eb-8d06-4dfe-a8da-7017afba7f5b de8835efa33e154e042d50b99a8f738a {"aliquot_tag": "ALQ_2429e905", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03962.WXS.N C3L-03962 LSCC WXS blood_normal CPT0233260002 CPT0233260002.WholeExome.RP-1303.bam 23830102973 BAM submitted_aligned CPTAC3 69589ef4-c49f-4cd7-a1f4-deb142c86416 7870fef3c2cad219f9681d4101a8c5bd {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03962.WXS.N.hg38 C3L-03962 LSCC WXS blood_normal CPT0233260002 02e2349f-c2ee-479c-81e2-1ce03fb3485e_wxs_gdc_realn.bam 32413838670 BAM harmonized CPTAC3 2fe277de-9a3a-47e9-8a69-33ed1f7da0ff 2e6ba1ed56992e1649ebb6d9481f4963 {"aliquot_tag": "ALQ_a5d05fb2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03962.WXS.T C3L-03962 LSCC WXS tumor CPT0233120006 CPT0233120006.WholeExome.RP-1303.bam 33000954598 BAM submitted_aligned CPTAC3 0a7e2173-b6bf-4714-a5f3-539dc8d5e048 56abda4947b1d951c86d6556b6ffb81b {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03962.WXS.T.hg38 C3L-03962 LSCC WXS tumor CPT0233120006 fa7582c9-d7a9-42d8-8fe2-e358ef604ee8_wxs_gdc_realn.bam 45456438728 BAM harmonized CPTAC3 d541a90b-a0cc-4cf5-bd39-83e9a90c9809 eac8fc35a8e4a9cbb9e2387b17ae5b9d {"aliquot_tag": "ALQ_d1a94fc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.MethArray.Green.A C3L-03963 LSCC Methylation_Array tissue_normal CPT0227420006 203219640133_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79dd6b11-6aed-4256-a57e-970010d81279 81194b71a69260d82529fff63a03ec72 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.MethArray.Green.T C3L-03963 LSCC Methylation_Array tumor CPT0227400006 203219640068_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a5b6422c-987d-4221-b8fb-32732ebf98d1 114a798466f514d71c82199ae3060699 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.MethArray.Red.A C3L-03963 LSCC Methylation_Array tissue_normal CPT0227420006 203219640133_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 53c41917-3be9-430f-b22d-ef34d2cd13e8 af3df89b84f19add2a874944873ecd97 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.MethArray.Red.T C3L-03963 LSCC Methylation_Array tumor CPT0227400006 203219640068_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 c4aee506-e504-4846-bdab-142db0bfb36a 6bdfcfc8ccc0139eaad6ef2116eefd39 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.miRNA-Seq.A.hg38 C3L-03963 LSCC miRNA-Seq tissue_normal CPT0227420009 d998ce1d-7cb9-47b9-8356-de655a634745_mirnaseq_gdc_realn.bam 226967352 BAM harmonized CPTAC3 bbcce0bb-67d8-450d-8f9f-d5944ffeb11e d40abca9ed0b7ec428e7f168feabc9c3 {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.miRNA-Seq.S24_L003_R1.T C3L-03963 LSCC miRNA-Seq tumor CPT0227400009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATTCCT_S24_L003_R1_001.unaln.bam 174436637 BAM S24_L003_R1 submitted_unaligned CPTAC3 3349b2fa-de9c-4e01-a6c8-d29e99a54f76 6a9e01dabfa0ef583e9e57470c67a05d {"aliquot_tag": "ALQ_53feb40a", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.miRNA-Seq.S6_L005_R1.A C3L-03963 LSCC miRNA-Seq tissue_normal CPT0227420009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCATTC_S6_L005_R1_001.unaln.bam 202777944 BAM S6_L005_R1 submitted_unaligned CPTAC3 a973632c-1e83-47a0-bd14-4d1ec49e992d 2b8f29f78c666d333f5af8713404baa5 {"aliquot_tag": "ALQ_293ee76a", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.miRNA-Seq.T.hg38 C3L-03963 LSCC miRNA-Seq tumor CPT0227400009 34bfc20e-cf76-4d61-8605-399ebff9a296_mirnaseq_gdc_realn.bam 195655805 BAM harmonized CPTAC3 8835a0ec-d3fb-47b6-bb32-324cfa3f63ab ddabc2c70a7124ad1d0ad50daa65f877 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.RNA-Seq.chimeric.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.chimeric.gdc_realn.bam 109579574 BAM chimeric harmonized CPTAC3 041c6eca-5af6-4f36-a8a0-47c7d0cc15c7 481da5604052e82341903ba2161028c7 {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.RNA-Seq.chimeric.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.chimeric.gdc_realn.bam 70141974 BAM chimeric harmonized CPTAC3 a6c4d25c-6b8b-47c9-b057-9c950f23bde6 8dccca4bd8ab0f6ebf6015a7eb8b81c7 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.RNA-Seq.genomic.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.genomic.gdc_realn.bam 6637014987 BAM genomic harmonized CPTAC3 5f754fc9-85d9-4728-997a-b2ae567e2613 62489dee86e759925a997f90e3f99a4c {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.RNA-Seq.genomic.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.genomic.gdc_realn.bam 9266692984 BAM genomic harmonized CPTAC3 6ceef58d-217e-4429-82b4-1fc88967f534 f9085980f61fce8e9117812de98be9c3 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.RNA-Seq.S10_L008_R1.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R1_001.fastq.gz 3704752687 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 637c9e1d-784f-4821-8b09-e98d39848dd9 69e612d357977ffbe1cc63689105d72f {"aliquot_tag": "ALQ_53feb40a", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.RNA-Seq.S10_L008_R2.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R2_001.fastq.gz 4097929870 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 b00501a5-1535-4721-8538-2f96a975ae75 c7cad77d5e685a52767e19d25442afda {"aliquot_tag": "ALQ_53feb40a", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.RNA-Seq.S7_L002_R1.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R1_001.fastq.gz 3045025236 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 50c2192e-d98a-42cf-817a-a10223b6102a b71ab01e3b9e5d8bac28053f73277dd7 {"aliquot_tag": "ALQ_293ee76a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.RNA-Seq.S7_L002_R2.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R2_001.fastq.gz 3314142862 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 6468e541-459f-4bde-9476-70d70ada41ff 88f4ed03ab73d14d110d1d9914a69969 {"aliquot_tag": "ALQ_293ee76a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.RNA-Seq.transcriptome.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.transcriptome.gdc_realn.bam 7366262123 BAM transcriptome harmonized CPTAC3 f927c4cd-bbfa-40ac-b759-75f91cb402b5 094048dd80c81479a5c88b1c1466cc0c {"aliquot_tag": "ALQ_293ee76a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.RNA-Seq.transcriptome.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.transcriptome.gdc_realn.bam 8254874913 BAM transcriptome harmonized CPTAC3 8faedf56-e085-4a8b-9dc8-eaa863b96573 9c4445046203da313f86668c4b9e15c2 {"aliquot_tag": "ALQ_53feb40a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.WGS.N C3L-03963 LSCC WGS blood_normal CPT0227530002 CPT0227530002.WholeGenome.RP-1303.bam 53665950297 BAM submitted_aligned CPTAC3 d6bd99fb-aa71-453e-b90c-5ddd455b7a14 b32e4ca62aa82fc2130dcfcffe0e5b25 {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03963.WGS.N.hg38 C3L-03963 LSCC WGS blood_normal CPT0227530002 d14970f8-64a4-4186-bec7-ccdf5e2a0505_wgs_gdc_realn.bam 77982457295 BAM harmonized CPTAC3 98737e65-d960-4a55-be3e-39b0f1372dad cf5d67b82a7dc820db518477e26b9a0f {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03963.WGS.T C3L-03963 LSCC WGS tumor CPT0227400006 CPT0227400006.WholeGenome.RP-1303.bam 69801381618 BAM submitted_aligned CPTAC3 b0a418fb-a789-4e04-b838-cc21d9fdf7a9 558ecf9ae97170f5f62358b1b616a1b3 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.WGS.T.hg38 C3L-03963 LSCC WGS tumor CPT0227400006 d2d9af9d-8785-44b7-b3f2-3359c624c777_wgs_gdc_realn.bam 101505490789 BAM harmonized CPTAC3 3b7b021f-f2d0-4d48-8904-8888170b4959 0bf909d6f1befdf63ce4745a2c8cdb77 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.WXS.A C3L-03963 LSCC WXS tissue_normal CPT0227420006 CPT0227420006.WholeExome.RP-1303.bam 22276838983 BAM submitted_aligned CPTAC3 a1a3b104-ae04-49d9-ad72-b37fb9dce940 03d4e2fe66baacc21307252f96be50e8 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.WXS.A.hg38 C3L-03963 LSCC WXS tissue_normal CPT0227420006 408abbff-f25e-4a7c-99fc-9b1ac5ba3cc5_wxs_gdc_realn.bam 31759975670 BAM harmonized CPTAC3 e53e2db6-1cad-4475-a683-2310ebf521cc 80a2f6cb708fd578612bccca03acae90 {"aliquot_tag": "ALQ_b981fafb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03963.WXS.N C3L-03963 LSCC WXS blood_normal CPT0227530002 CPT0227530002.WholeExome.RP-1303.bam 25790684271 BAM submitted_aligned CPTAC3 28254079-e57c-4ddd-93f3-faaf928b633e 5bbb174376b97ce3ae04b018b7532a4f {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03963.WXS.N.hg38 C3L-03963 LSCC WXS blood_normal CPT0227530002 d14970f8-64a4-4186-bec7-ccdf5e2a0505_wxs_gdc_realn.bam 35174358636 BAM harmonized CPTAC3 04555288-8327-4491-89cd-a06803176765 1a11144a846bbc937be72b1d7360cb42 {"aliquot_tag": "ALQ_48d0c4f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03963.WXS.T C3L-03963 LSCC WXS tumor CPT0227400006 CPT0227400006.WholeExome.RP-1303.bam 23022579057 BAM submitted_aligned CPTAC3 b6dccb03-241a-4716-b9ed-b5ac22767618 3cd1bc8b6cc62a8d94ea9b0f0386292f {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03963.WXS.T.hg38 C3L-03963 LSCC WXS tumor CPT0227400006 d2d9af9d-8785-44b7-b3f2-3359c624c777_wxs_gdc_realn.bam 31663441009 BAM harmonized CPTAC3 ff302d49-b116-4560-a382-d018b852b5d5 90f1f15ddcb16b366477427ed409c5a4 {"aliquot_tag": "ALQ_c341a99b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.MethArray.Green.A C3L-03965 LSCC Methylation_Array tissue_normal CPT0207250009 203219670106_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 df2e7cff-1b74-4038-b97b-73b91e1e8dd3 55bf4ee88d3c6278c5980cf782061318 {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.MethArray.Green.T C3L-03965 LSCC Methylation_Array tumor CPT0207210006 203219720176_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2f526291-4a94-46e8-8d94-74d21565a544 0bf98435602acedaaba57cc7d3ed2b29 {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.MethArray.Red.A C3L-03965 LSCC Methylation_Array tissue_normal CPT0207250009 203219670106_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 0daa01c3-03a9-4783-bdee-896fae31fbec 4e1c70070a08215cd8db8b3e0474c75f {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.MethArray.Red.T C3L-03965 LSCC Methylation_Array tumor CPT0207210006 203219720176_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 7eb680d1-938e-444e-bf7e-1d2b6a2607cb 50309d7770d5208bcdf7b51ef384d3dd {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.miRNA-Seq.A.hg38 C3L-03965 LSCC miRNA-Seq tissue_normal CPT0207250006 7aa350e8-d42c-4405-97a5-1161f136e421_mirnaseq_gdc_realn.bam 225784617 BAM harmonized CPTAC3 695637f6-ba5a-4687-8ab6-c435828b825d 329b840cd6fa57afd24e2b6c70fa0609 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.miRNA-Seq.S24_L005_R1.A C3L-03965 LSCC miRNA-Seq tissue_normal CPT0207250006 190206_UNC31-K00269_0191_AH2WY5BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 199058676 BAM S24_L005_R1 submitted_unaligned CPTAC3 b298878d-5f10-4d17-8c83-0b0f6e4a1125 0fb9abfc5270a17e46acd0be6dca444e {"aliquot_tag": "ALQ_9fddc28b", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.miRNA-Seq.S4_L001_R1.T C3L-03965 LSCC miRNA-Seq tumor CPT0207210009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGAAG_S4_L001_R1_001.unaln.bam 194196908 BAM S4_L001_R1 submitted_unaligned CPTAC3 89b2a2bf-324b-47be-852d-c6672a7edd87 8ccf8f4eb381e7fd751d80d70779a9c0 {"aliquot_tag": "ALQ_fae279da", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.miRNA-Seq.T.hg38 C3L-03965 LSCC miRNA-Seq tumor CPT0207210009 54ccb2b4-ba4f-4f72-b55b-d122ff139f77_mirnaseq_gdc_realn.bam 227858141 BAM harmonized CPTAC3 7d37423f-cea8-4e92-98a3-1cff3a3834f6 02e53bd8eac59db7e29fc162e9df7d0c {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.RNA-Seq.chimeric.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.chimeric.gdc_realn.bam 220660573 BAM chimeric harmonized CPTAC3 55af1dab-b045-4e05-af3a-be3d301ad133 ffd147378aaab458173649d1d849b442 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.RNA-Seq.chimeric.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.chimeric.gdc_realn.bam 159966732 BAM chimeric harmonized CPTAC3 e8da0699-6c2a-4c84-aaf9-8c78938ee85c ddedc5cecdee8593257a1a7945aad3e8 {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.RNA-Seq.genomic.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.genomic.gdc_realn.bam 8783869147 BAM genomic harmonized CPTAC3 329d6ffe-e0f5-41d0-90c5-64adfd00ef0f 85a9707673402cfa2bbb4f9f22193c65 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.RNA-Seq.genomic.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.genomic.gdc_realn.bam 10420358928 BAM genomic harmonized CPTAC3 35b53149-cd29-4ea8-b56a-260343450918 bd35c0d850a6e809e00190b4c08b3b50 {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.RNA-Seq.S17_L005_R1.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 4157303846 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 0e317482-0734-4b81-939d-cf634149f0c8 f4bae6371bc7ef4297ecef30d1b0d2a6 {"aliquot_tag": "ALQ_9fddc28b", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.RNA-Seq.S17_L005_R2.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 4554290894 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 60d87417-4be8-454b-947d-650fe39b2ef0 4aae7402b802d716b0e449ad0d48cd0a {"aliquot_tag": "ALQ_9fddc28b", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.RNA-Seq.S7_L002_R1.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R1_001.fastq.gz 4793695484 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 6fcd290a-cc70-40ce-bc63-4730ea7939c9 39f7409c75ea08dddfb08f2446400573 {"aliquot_tag": "ALQ_fae279da", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.RNA-Seq.S7_L002_R2.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R2_001.fastq.gz 5153429353 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 b5998c3a-c80b-4fad-b796-6edc3f14ca16 3bdb433aa0254531b4b3ebb66f4c37cf {"aliquot_tag": "ALQ_fae279da", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.RNA-Seq.transcriptome.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.transcriptome.gdc_realn.bam 9427404932 BAM transcriptome harmonized CPTAC3 8d263302-132a-47ee-a7ce-6aa88d74ec27 7fc7e1156971e6d5a509e7696bf75539 {"aliquot_tag": "ALQ_9fddc28b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.RNA-Seq.transcriptome.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.transcriptome.gdc_realn.bam 12514526693 BAM transcriptome harmonized CPTAC3 4fddea50-e733-4488-8402-9d66cd91c14c 8807e91ffddc0fbd51d07d3bd1fff9bb {"aliquot_tag": "ALQ_fae279da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.WGS.N C3L-03965 LSCC WGS blood_normal CPT0207360002 CPT0207360002.WholeGenome.RP-1303.bam 60833619609 BAM submitted_aligned CPTAC3 b0c60e5c-a492-48bd-b9a6-6a5934f852a7 0e7bed5a10a3eee8da46d40c6db4a7b8 {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03965.WGS.N.hg38 C3L-03965 LSCC WGS blood_normal CPT0207360002 9b912644-c500-4133-a97b-215ecd2c4688_wgs_gdc_realn.bam 90428975998 BAM harmonized CPTAC3 d4473ede-affb-4d91-a124-be84b540a9b4 35f0f984343c97ebac417905e3706f29 {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03965.WGS.T C3L-03965 LSCC WGS tumor CPT0207210006 CPT0207210006.WholeGenome.RP-1303.bam 66019381991 BAM submitted_aligned CPTAC3 b388a513-43f3-402d-b31d-4398a630cf68 79facc0322f7faa6146aab1e685219a7 {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.WGS.T.hg38 C3L-03965 LSCC WGS tumor CPT0207210006 2e89777b-80db-4682-8fd6-a3e5e2263f36_wgs_gdc_realn.bam 100040345060 BAM harmonized CPTAC3 9b510852-fab6-4526-8f7b-7b588f18c8a6 e7ac01a95f070c17eedf7da0b6158a2a {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.WXS.A C3L-03965 LSCC WXS tissue_normal CPT0207250009 CPT0207250009.WholeExome.RP-1303.bam 21396904136 BAM submitted_aligned CPTAC3 3d1ea900-822d-497f-bbf2-a464609c3fce e3797868fab473bc57a070c9c8e21d79 {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.WXS.A.hg38 C3L-03965 LSCC WXS tissue_normal CPT0207250009 f15a3b95-959d-4361-9773-a8cd9b214cc9_wxs_gdc_realn.bam 29383316981 BAM harmonized CPTAC3 228f09a7-72e8-45db-9502-594eebf6172f 99cd54353324f54b822cb28fdb3eb020 {"aliquot_tag": "ALQ_f62df1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03965.WXS.N C3L-03965 LSCC WXS blood_normal CPT0207360002 CPT0207360002.WholeExome.RP-1303.bam 38599064047 BAM submitted_aligned CPTAC3 8cfcd686-0038-4ccc-a5b3-31ce4cf89cde 4dbe17dcf2e92e8d13e0b326d61b73a5 {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03965.WXS.N.hg38 C3L-03965 LSCC WXS blood_normal CPT0207360002 9b912644-c500-4133-a97b-215ecd2c4688_wxs_gdc_realn.bam 52992469744 BAM harmonized CPTAC3 1b195337-628b-4637-9c1d-f36d99df8e98 f41b517ad111701ef0b8fe321728453e {"aliquot_tag": "ALQ_144cafe7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03965.WXS.T C3L-03965 LSCC WXS tumor CPT0207210006 CPT0207210006.WholeExome.RP-1303.bam 23195827417 BAM submitted_aligned CPTAC3 5ccbe3b8-a644-4af9-87dd-f2fcd7d63ea7 a409f96ae28ac07356780d85f46a55fb {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03965.WXS.T.hg38 C3L-03965 LSCC WXS tumor CPT0207210006 2e89777b-80db-4682-8fd6-a3e5e2263f36_wxs_gdc_realn.bam 31695767059 BAM harmonized CPTAC3 895e5823-7469-4c9c-b6ef-a0dd36248635 1a7850559cba878bc6dc2dd71c989b31 {"aliquot_tag": "ALQ_6a5d644b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.MethArray.Green.T C3L-03968 GBM Methylation_Array tumor CPT0228220006 203219650003_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 48a3b07d-67b6-46d3-aa8e-4ee88fbeba21 284c69845d597d4ca6af6a0eb1e7e4d8 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.MethArray.Red.T C3L-03968 GBM Methylation_Array tumor CPT0228220006 203219650003_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 ed11a706-262f-46a8-80bd-d39d28c2713c de8d05d0614ba64d47dbe46a55420762 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.miRNA-Seq.S23_L003_R1.T C3L-03968 GBM miRNA-Seq tumor CPT0228220009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAAAAG_S23_L003_R1_001.unaln.bam 191661159 BAM S23_L003_R1 submitted_unaligned CPTAC3 e3671f7f-9a15-41b7-af21-8b1b50181e24 6184679f52a95c994889ecfc54fe9673 {"aliquot_tag": "ALQ_92f749e", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.miRNA-Seq.T.hg38 C3L-03968 GBM miRNA-Seq tumor CPT0228220009 1d6001d1-2404-405a-8db0-034f92eac251_mirnaseq_gdc_realn.bam 213955050 BAM harmonized CPTAC3 8735fa9f-4346-400c-a03c-363d930400ee aa0d8312ce1cb1d453ee42582b4fe9f2 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.RNA-Seq.chimeric.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.chimeric.gdc_realn.bam 88975592 BAM chimeric harmonized CPTAC3 f7b9c081-20fd-4a76-949d-133b0d6b5d76 1ecbf3f1680dfb960a300e991e6916d2 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.RNA-Seq.genomic.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.genomic.gdc_realn.bam 10165814453 BAM genomic harmonized CPTAC3 5d9c6d5d-2afd-42f2-91da-d6a763125634 56fe62c726c0eecf522244100f02a991 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.RNA-Seq.S12_L008_R1.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R1_001.fastq.gz 4636196096 FASTQ S12_L008_R1 submitted_unaligned CPTAC3 b6017d4a-a185-48b3-be09-6924aebbd163 8903ee3b1ed5b552cd66ca11165ea149 {"aliquot_tag": "ALQ_92f749e", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.RNA-Seq.S12_L008_R2.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R2_001.fastq.gz 4944644409 FASTQ S12_L008_R2 submitted_unaligned CPTAC3 caa46304-d90c-4d2f-b172-b917ea44d003 a2da5dd50e0722ea635db8f901eec369 {"aliquot_tag": "ALQ_92f749e", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.RNA-Seq.transcriptome.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.transcriptome.gdc_realn.bam 9695661736 BAM transcriptome harmonized CPTAC3 6ce14bae-b965-4554-a85b-cc38ec4891de ddb2d00c583d32918a224255f9694421 {"aliquot_tag": "ALQ_92f749e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.scRNA-Seq.S5_L003_R1.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R1_001.fastq.gz 12332046890 FASTQ S5_L003_R1 submitted_unaligned CPTAC3 fde2e78c-2330-4e10-ac7b-f405d95d1a9c 252ef1d82c3093686468a861096ec187 {"aliquot_tag": "ALQ_779e0823", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.scRNA-Seq.S5_L003_R2.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R2_001.fastq.gz 27268492073 FASTQ S5_L003_R2 submitted_unaligned CPTAC3 69a226f6-99ba-4783-a417-7cd596be4868 256d74984b78ed853d6156bde8b0370b {"aliquot_tag": "ALQ_779e0823", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.scRNA-Seq.T.hg38 C3L-03968 GBM scRNA-Seq tumor CPT0228220004 possorted_genome_bam.bam 31087850916 BAM harmonized CPTAC3 514aacd9-b0dd-47c1-b49f-3a66ca04ea13 62f12b60d0ff5f5d338b504a01628b6e {"aliquot_tag": "ALQ_779e0823", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.WGS.N C3L-03968 GBM WGS blood_normal CPT0228320002 CPT0228320002.WholeGenome.RP-1303.bam 51775732268 BAM submitted_aligned CPTAC3 9efb45b1-b5e0-48b5-86cb-660f2dafa2e8 fdb0574beba867ef5bd393d022e8e39a {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03968.WGS.N.hg38 C3L-03968 GBM WGS blood_normal CPT0228320002 8b735522-06d1-4074-adb7-0f326c2842b4_wgs_gdc_realn.bam 75690377017 BAM harmonized CPTAC3 1b49821e-bb58-4201-ae96-cb252e209018 3909b91bab18b2699192b8bfc54729c0 {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03968.WGS.T C3L-03968 GBM WGS tumor CPT0228220006 CPT0228220006.WholeGenome.RP-1303.bam 61251194504 BAM submitted_aligned CPTAC3 8caecb2c-3677-4732-9297-62c2e37d5ff3 a972678f5ae88be3c8e7952fbb2d693f {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.WGS.T.hg38 C3L-03968 GBM WGS tumor CPT0228220006 9616e8d2-5da6-4585-877b-be3056794e29_wgs_gdc_realn.bam 88956331568 BAM harmonized CPTAC3 150b83ed-69d5-4474-b11c-d3def690a707 c89ed2a350a148ee74890838f82ce23e {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.WXS.N C3L-03968 GBM WXS blood_normal CPT0228320002 CPT0228320002.WholeExome.RP-1303.bam 25548039141 BAM submitted_aligned CPTAC3 ace4bb1f-f3a7-4ad4-a78b-ee6336a220ff db0c8d4b6fac634d0e80b03250435dcd {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03968.WXS.N.hg38 C3L-03968 GBM WXS blood_normal CPT0228320002 8b735522-06d1-4074-adb7-0f326c2842b4_wxs_gdc_realn.bam 35010752097 BAM harmonized CPTAC3 b8b7a741-d303-4b90-a138-639e9f89cede d5852f8eb9c20b3542815806c98e79d7 {"aliquot_tag": "ALQ_55a17eb3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03968.WXS.T C3L-03968 GBM WXS tumor CPT0228220006 CPT0228220006.WholeExome.RP-1303.bam 27157559453 BAM submitted_aligned CPTAC3 117ba2db-8177-4f3a-9f0f-1512fbcf3ac5 57294f572991669842ed1c2ad3ba2ed4 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03968.WXS.T.hg38 C3L-03968 GBM WXS tumor CPT0228220006 9616e8d2-5da6-4585-877b-be3056794e29_wxs_gdc_realn.bam 38241565674 BAM harmonized CPTAC3 09e2eaca-e541-4762-bbb5-5acfcf3a6f99 98c391a040e7ca1b88dbd181d1637d74 {"aliquot_tag": "ALQ_9990690f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.MethArray.Green.A C3L-03969 LUAD Methylation_Array tissue_normal CPT0229390010 203561620162_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5769edd8-0ba9-4ab2-886b-c533c6c7e00a 7f0b6bba4b0e68a0194525558cfc8502 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.MethArray.Green.T C3L-03969 LUAD Methylation_Array tumor CPT0229360007 203561450023_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 e3ebf615-75d8-461d-83e9-c1c88c2bfbd8 86231e0c69e132249cfa58db4eb7b5ec {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.MethArray.Red.A C3L-03969 LUAD Methylation_Array tissue_normal CPT0229390010 203561620162_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 8256ac81-5648-42f2-871b-38347dc460d3 d85bb451925a766b47a9376b693df304 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.MethArray.Red.T C3L-03969 LUAD Methylation_Array tumor CPT0229360007 203561450023_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9e737061-8c88-4194-8982-71b81b274fdf d6673f38a1ee21df3cd53b3f4515bbeb {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.miRNA-Seq.A.hg38 C3L-03969 LUAD miRNA-Seq tissue_normal CPT0229390007 0858f76b-0e40-463c-a9a9-cfb7a0560939_mirnaseq_gdc_realn.bam 201013123 BAM harmonized CPTAC3 83d4b3db-39d9-4f0c-89c7-9ba2cf087b15 a87fecb8572a1741a94820e9a4b7cabd {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.miRNA-Seq.S17_L007_R1.A C3L-03969 LUAD miRNA-Seq tissue_normal CPT0229390007 190722_UNC31-K00269_0234_AH7VGTBBXY_GTTTCG_S17_L007_R1_001.unaln.bam 176718051 BAM S17_L007_R1 submitted_unaligned CPTAC3 36ab8c32-d80d-4eab-9632-7d5129507fcf 2d0e83311a536715f92812a1222719d7 {"aliquot_tag": "ALQ_f46cb099", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.miRNA-Seq.S29_L004_R1.T C3L-03969 LUAD miRNA-Seq tumor CPT0229360010 190722_UNC31-K00269_0234_AH7VGTBBXY_CATTTT_S29_L004_R1_001.unaln.bam 226589942 BAM S29_L004_R1 submitted_unaligned CPTAC3 fa109316-8c4c-401d-9e56-6879ff954e0a b7f98322c83d4a75a054580507d3a562 {"aliquot_tag": "ALQ_f14383aa", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.miRNA-Seq.T.hg38 C3L-03969 LUAD miRNA-Seq tumor CPT0229360010 c90298f6-24c8-4130-bcea-4e65a6886c29_mirnaseq_gdc_realn.bam 248197645 BAM harmonized CPTAC3 5a282886-b90b-48d9-8034-8e6ad8d0f3e2 d4f6b0ee253bb81aff98fe2c0f963208 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.RNA-Seq.chimeric.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.chimeric.gdc_realn.bam 25708444 BAM chimeric harmonized CPTAC3 68b58a5f-809b-40f3-b092-0ab7cc630cf2 a878016d727d3393c4f66eaf51feec3f {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.RNA-Seq.chimeric.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.chimeric.gdc_realn.bam 32681755 BAM chimeric harmonized CPTAC3 b10f7d8a-16c1-45d5-8ed1-cc88f3953316 e3d9780da13e330f23aaa10aea74bc15 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.RNA-Seq.genomic.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.genomic.gdc_realn.bam 11010451280 BAM genomic harmonized CPTAC3 efca4d59-387f-42ac-86f0-1598c653b44a f96ae5b4a9b6f52eb3d40b669cb9d2fd {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.RNA-Seq.genomic.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.genomic.gdc_realn.bam 11721090046 BAM genomic harmonized CPTAC3 72edf8b4-a14d-42b1-9dc9-401fbed9bdf7 9db54b9d524b29043e4e85e9807a12e2 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.RNA-Seq.S21_L006_R1.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R1_001.fastq.gz 3781375419 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 43507f31-8ecf-4b74-b825-91d2d500e1c8 c63e638c315c3f693130cb7e9159f4f6 {"aliquot_tag": "ALQ_f14383aa", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.RNA-Seq.S21_L006_R2.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R2_001.fastq.gz 4218090532 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 c756d39b-ac1c-4507-b3e5-e2ebfcd2b568 fceb72d7cd5210b8d0e447b527330ad6 {"aliquot_tag": "ALQ_f14383aa", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.RNA-Seq.S27_L007_R1.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R1_001.fastq.gz 3773757903 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 8a354b39-5529-48f4-96a9-4d98d5bd3158 a64fe6b2a0fe835e36528218ad1c471e {"aliquot_tag": "ALQ_f46cb099", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.RNA-Seq.S27_L007_R2.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R2_001.fastq.gz 4112110859 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 0592d378-f99e-40d6-814e-0d8a72167e96 0600ebb1666d6f0acb49fe7deafdb6d7 {"aliquot_tag": "ALQ_f46cb099", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.RNA-Seq.transcriptome.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.transcriptome.gdc_realn.bam 7503136161 BAM transcriptome harmonized CPTAC3 239af458-d2dd-43b5-ada0-598e5a212b07 1726b856ad8b2c9ca4eb782ba0b1d7d4 {"aliquot_tag": "ALQ_f46cb099", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.RNA-Seq.transcriptome.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.transcriptome.gdc_realn.bam 7992063542 BAM transcriptome harmonized CPTAC3 018fc022-06c2-49ae-9ed3-101e1077bb19 33011fd7db38be99e78283440abf4380 {"aliquot_tag": "ALQ_f14383aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.WGS.N C3L-03969 LUAD WGS blood_normal CPT0229500002 CPT0229500002.WholeGenome.RP-1303.bam 67687380228 BAM submitted_aligned CPTAC3 90cb5a5a-cdda-4966-976c-a106ed80c4fe 3583bd00c3bd46c62596f5821ceb41dc {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03969.WGS.N.hg38 C3L-03969 LUAD WGS blood_normal CPT0229500002 011bdc0d-8bf8-40eb-93eb-b45db054f7de_wgs_gdc_realn.bam 98596122288 BAM harmonized CPTAC3 08b27748-8515-4dca-bc85-ed1857151e25 3e7e5ccdae163f48ffe748a43d84162d {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03969.WGS.T C3L-03969 LUAD WGS tumor CPT0229360007 CPT0229360007.WholeGenome.RP-1303.bam 74136999101 BAM submitted_aligned CPTAC3 15b0b926-51da-4193-8fc5-3d096d2a24a0 c73979366c061d7fa77a6147100280d8 {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.WGS.T.hg38 C3L-03969 LUAD WGS tumor CPT0229360007 71c06a19-995c-4bcd-8e52-5e44228e1155_wgs_gdc_realn.bam 109976181956 BAM harmonized CPTAC3 8cc66889-df53-445d-9c34-7f4d0385d129 ea21de04b3d61dfd347c36dcf83fecdf {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.WXS.A C3L-03969 LUAD WXS tissue_normal CPT0229390010 CPT0229390010.WholeExome.RP-1303.bam 25835207507 BAM submitted_aligned CPTAC3 437aa3e7-397f-4bdf-947e-98c9cc1b5efc 7ce38fc8cd6cc00b994a06d58a0840c6 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.WXS.A.hg38 C3L-03969 LUAD WXS tissue_normal CPT0229390010 998bb1d8-0288-4c9f-9e01-8ca945a39964_wxs_gdc_realn.bam 35531503312 BAM harmonized CPTAC3 abc7dc15-dcc8-4710-bd57-23105c7dc902 750d282285922f6b989d676da95f24a6 {"aliquot_tag": "ALQ_7313147b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03969.WXS.N C3L-03969 LUAD WXS blood_normal CPT0229500002 CPT0229500002.WholeExome.RP-1303.bam 24991189138 BAM submitted_aligned CPTAC3 b1ae9f66-fc9c-45f2-b618-d8dcadf69837 a128002d0afba71b45e344485204687e {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03969.WXS.N.hg38 C3L-03969 LUAD WXS blood_normal CPT0229500002 011bdc0d-8bf8-40eb-93eb-b45db054f7de_wxs_gdc_realn.bam 34382710947 BAM harmonized CPTAC3 a403cc1f-05da-41a6-abd2-d963b7c5c058 c1aa029ec79031eeb42a7b4931951264 {"aliquot_tag": "ALQ_5f4fc57a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03969.WXS.T C3L-03969 LUAD WXS tumor CPT0229360007 CPT0229360007.WholeExome.RP-1303.bam 24356854446 BAM submitted_aligned CPTAC3 783723f1-2500-479a-aa41-f96c10efb299 e4d3498cb9f781571dd143a5b618e9d4 {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03969.WXS.T.hg38 C3L-03969 LUAD WXS tumor CPT0229360007 71c06a19-995c-4bcd-8e52-5e44228e1155_wxs_gdc_realn.bam 33840135232 BAM harmonized CPTAC3 ad78aab7-83a1-4577-9f60-a533aeed6913 b1e55b67569393b293079d2b333ef438 {"aliquot_tag": "ALQ_763c2748", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.MethArray.Green.A C3L-03976 LUAD Methylation_Array tissue_normal CPT0231930006 203561620053_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 11c412f2-6ea0-4353-aeb1-e618e62e976c 76c389b789a95fcc220495567a22122b {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.MethArray.Green.T C3L-03976 LUAD Methylation_Array tumor CPT0231920006 203561620089_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 89b3f931-b954-4dcd-a7cb-8698f0d63b8d 51e7a01b63f9cf6d324c8c2a8c20e6e9 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.MethArray.Red.A C3L-03976 LUAD Methylation_Array tissue_normal CPT0231930006 203561620053_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 6851565a-0abf-4506-ad60-418dd291d405 f1b240cfa6afe7fc21f23d1276323732 {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.MethArray.Red.T C3L-03976 LUAD Methylation_Array tumor CPT0231920006 203561620089_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a2f2e4d5-c712-4269-8008-3ae0b9d9f08a 4ce794a3509d018982cb4ab1f6de32c3 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.miRNA-Seq.A.hg38 C3L-03976 LUAD miRNA-Seq tissue_normal CPT0231930009 392db083-3055-4daf-a861-0546a970291e_mirnaseq_gdc_realn.bam 224997999 BAM harmonized CPTAC3 9d93db0d-8acb-4f87-93b5-f05b256ce18e 911b3f8bbb24a7361eafd22b931444b1 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.miRNA-Seq.S1_L005_R1.A C3L-03976 LUAD miRNA-Seq tissue_normal CPT0231930009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACAGTG_S1_L005_R1_001.unaln.bam 199990331 BAM S1_L005_R1 submitted_unaligned CPTAC3 d58f99ec-2ec0-4a58-a5f8-890dee4db5f9 31e91c1a9a9923200ab8f53f9972a517 {"aliquot_tag": "ALQ_7bae8a0", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.miRNA-Seq.S32_L004_R1.T C3L-03976 LUAD miRNA-Seq tumor CPT0231920009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTATAC_S32_L004_R1_001.unaln.bam 211252261 BAM S32_L004_R1 submitted_unaligned CPTAC3 fa7c67f7-8bfa-44f9-9980-e6fe14a2ecad d0f127c8ccfbe3deeff8fb3b10715b8e {"aliquot_tag": "ALQ_3adac110", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.miRNA-Seq.T.hg38 C3L-03976 LUAD miRNA-Seq tumor CPT0231920009 f560c5ae-9c42-454e-8c99-577718cb00ac_mirnaseq_gdc_realn.bam 233700633 BAM harmonized CPTAC3 2a275a8c-7663-4067-bc08-dd201c6c14e3 d228c4bc23a9eccf77f3e3fe82254d0c {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.RNA-Seq.chimeric.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.chimeric.gdc_realn.bam 35754791 BAM chimeric harmonized CPTAC3 2a133700-629f-4f74-8b6b-305dde613def dacca239f8563beabfbb9fff5ade8959 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.RNA-Seq.chimeric.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.chimeric.gdc_realn.bam 32508139 BAM chimeric harmonized CPTAC3 7f47644c-3fcb-419d-a9f3-4890e904be2f a19c8ec825f51a5dc0306d223979f9e8 {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.RNA-Seq.genomic.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.genomic.gdc_realn.bam 11111334841 BAM genomic harmonized CPTAC3 71c39737-deb4-48f9-aec3-f56b2a010f2e 550dd6d3e4ec89b6410ac0352d8f32b0 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.RNA-Seq.genomic.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.genomic.gdc_realn.bam 10750357681 BAM genomic harmonized CPTAC3 3072f939-f729-464e-8282-4ab9b1d4cfe5 0b6a414160b65fbbe1aeffdeedd63fb8 {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.RNA-Seq.S17_L005_R1.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R1_001.fastq.gz 3828312219 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 ffae055a-9b9e-47be-9ea6-6cbfd63919be aa74659c022a151e3f2e5b0d74497573 {"aliquot_tag": "ALQ_3adac110", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.RNA-Seq.S17_L005_R2.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R2_001.fastq.gz 4413490184 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 77578ee6-a648-467c-8f69-d57393a72d1e 3e452f523fad84c7cc2e096b62a25cb3 {"aliquot_tag": "ALQ_3adac110", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.RNA-Seq.S19_L005_R1.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R1_001.fastq.gz 3626997230 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 d02ddc2c-97bf-4e44-acb4-66a4977e8f8e 3752941a47e770bc8b93e8a166ad41d1 {"aliquot_tag": "ALQ_7bae8a0", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.RNA-Seq.S19_L005_R2.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R2_001.fastq.gz 4123451902 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 b164eeb6-6729-4436-96bd-a46b0f411f1c 6f7f573fed4acc939284e07a0da72b16 {"aliquot_tag": "ALQ_7bae8a0", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.RNA-Seq.transcriptome.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.transcriptome.gdc_realn.bam 7714482059 BAM transcriptome harmonized CPTAC3 46bb9ea0-06a4-44c7-89f7-96159167685d e035bc60cf3a3052139416ac831eae72 {"aliquot_tag": "ALQ_7bae8a0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.RNA-Seq.transcriptome.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.transcriptome.gdc_realn.bam 9104772852 BAM transcriptome harmonized CPTAC3 7c0fff85-be9b-42a8-aa6c-bf47a2d515e2 63ada731b3704d319c26af0e7f7772cc {"aliquot_tag": "ALQ_3adac110", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.WGS.N C3L-03976 LUAD WGS blood_normal CPT0232040002 CPT0232040002.WholeGenome.RP-1303.bam 77786005294 BAM submitted_aligned CPTAC3 99f0ef7b-948a-4b34-b79d-2d4f7d9b42a1 2f2d94f15a8aa2fb6d169949b2487f68 {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03976.WGS.N.hg38 C3L-03976 LUAD WGS blood_normal CPT0232040002 8a234209-d16c-4a7e-8375-70d06e443c9a_wgs_gdc_realn.bam 112790953963 BAM harmonized CPTAC3 3bb202a0-5bef-4e77-87d4-ba6ddd84c38d ad69082250fb8802d575e821ba317ace {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03976.WGS.T C3L-03976 LUAD WGS tumor CPT0231920006 CPT0231920006.WholeGenome.RP-1303.bam 80585241008 BAM submitted_aligned CPTAC3 07c4b6e8-c190-4d5f-98e4-3f4b999b0387 aeea1484b26f168ea85cbbbc263abe00 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.WGS.T.hg38 C3L-03976 LUAD WGS tumor CPT0231920006 78bdd4ee-0128-4b45-bca7-dfc92a9cacf1_wgs_gdc_realn.bam 116072282359 BAM harmonized CPTAC3 e35fc319-46d8-41db-af1e-0b2d5948aa77 7ba0636d4e75286dafcc6f3ff91f1620 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.WXS.A C3L-03976 LUAD WXS tissue_normal CPT0231930006 CPT0231930006.WholeExome.RP-1303.bam 19706083571 BAM submitted_aligned CPTAC3 f26316ff-7930-430c-bc84-12b6136f5851 55aed94bf587999d4763a04a95cf6005 {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.WXS.A.hg38 C3L-03976 LUAD WXS tissue_normal CPT0231930006 61ed3db7-d43f-41f1-84ea-282c7c49375c_wxs_gdc_realn.bam 27407383282 BAM harmonized CPTAC3 e543560d-d510-4b93-a185-fd342377609e d542fb5c5724555973927eb1a1fad9d0 {"aliquot_tag": "ALQ_9705f531", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03976.WXS.N C3L-03976 LUAD WXS blood_normal CPT0232040002 CPT0232040002.WholeExome.RP-1303.bam 28973460680 BAM submitted_aligned CPTAC3 e95a89b9-270e-42bf-a71e-35492fa19440 776aa34f4fa9a3758db7d0710e69626d {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03976.WXS.N.hg38 C3L-03976 LUAD WXS blood_normal CPT0232040002 8a234209-d16c-4a7e-8375-70d06e443c9a_wxs_gdc_realn.bam 39810194181 BAM harmonized CPTAC3 068c9af6-50cb-41b2-a2d9-0b32c030a383 e8ad82968a3a12d6cbcc59c57ff56d4d {"aliquot_tag": "ALQ_34afa66d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03976.WXS.T C3L-03976 LUAD WXS tumor CPT0231920006 CPT0231920006.WholeExome.RP-1303.bam 20856425377 BAM submitted_aligned CPTAC3 13e6d958-9a93-4dee-a24b-500e85b902cb 0da6a73e3e986d2e591dd59b893be1a1 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03976.WXS.T.hg38 C3L-03976 LUAD WXS tumor CPT0231920006 78bdd4ee-0128-4b45-bca7-dfc92a9cacf1_wxs_gdc_realn.bam 28503384184 BAM harmonized CPTAC3 a912430f-de07-4968-a2cd-b3fe9299d17f 320944823d0e14cdc6e0c754fa294f72 {"aliquot_tag": "ALQ_aa65dc81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03982.MethArray.Green.A C3L-03982 LSCC Methylation_Array tissue_normal CPT0258510006 204367490093_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 529b3837-7279-422e-9996-9db14ff44039 4b70be6cc1d0da3e4382010cb8b6bda7 {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.MethArray.Green.T C3L-03982 LSCC Methylation_Array tumor CPT0258440007 204367470124_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 9d0c3cda-2009-4533-9915-79dd02146976 667b8569515ebd48c03f6763100ac834 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.MethArray.Red.A C3L-03982 LSCC Methylation_Array tissue_normal CPT0258510006 204367490093_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 b7b5e27d-39a2-425d-a92b-7f72ad01208b 16ebb28a9c296503fa7e1bcfaebf283a {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.MethArray.Red.T C3L-03982 LSCC Methylation_Array tumor CPT0258440007 204367470124_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 e8d3c3f3-700d-4a6f-8418-4882ef1a3b3f c4463631acc35387ae49b76e0977e647 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.miRNA-Seq.A.hg38 C3L-03982 LSCC miRNA-Seq tissue_normal CPT0258510009 fddc16a9-3efb-4422-9feb-eb5988f76ebc_mirnaseq_gdc_realn.bam 257426342 BAM harmonized CPTAC3 e357b633-bf49-461f-9747-351db7c6a970 f5a5316820e1e2f2a1142279ee79baf8 {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.miRNA-Seq.S13_L001_R1.T C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 200526_UNC32-K00270_0248_BHH7WFBBXY_GATCAG_S13_L001_R1_001.unaln.bam 189193316 BAM S13_L001_R1 submitted_unaligned CPTAC3 7332a096-ea3b-4d4c-8bbf-7c4a1c066b3a 24787eba626532af29bd2cbcd01fe12d {"aliquot_tag": "ALQ_3a34e2df", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.miRNA-Seq.S13_L007_R1.A C3L-03982 LSCC miRNA-Seq tissue_normal CPT0258510009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GATCAG_S13_L007_R1_001.unaln.bam 233471124 BAM S13_L007_R1 submitted_unaligned CPTAC3 f5d3fadd-adc5-4ea6-9028-3d18edb2c248 38dada1b8043727e577ce29f2bd3c363 {"aliquot_tag": "ALQ_594f37ef", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.miRNA-Seq.S9_L006_R1.T C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 200224_UNC31-K00269_0267_AHC722BBXY_GATCAG_S9_L006_R1_001.unaln.bam 203350495 BAM S9_L006_R1 submitted_unaligned CPTAC3 ecad22b1-cd2d-4bb8-9c0c-8a3ce65094b1 c3d8f323122c7c5294c2eb746031c74d {"aliquot_tag": "ALQ_3a34e2df", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.miRNA-Seq.T.hg38 C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 4465468e-ddcc-46b0-87d7-c0ac04982740_mirnaseq_gdc_realn.bam 431849346 BAM harmonized CPTAC3 2c86a893-bf62-4f57-b09a-fa32a3a325fc b79fd595485fdd38279abe5739c57840 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.RNA-Seq.chimeric.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.chimeric.gdc_realn.bam 84597980 BAM chimeric harmonized CPTAC3 e52c2b2c-2076-42f4-ae36-be6d2d9d1f77 ea4fbffe52e1ba8948aaca3cee1ec504 {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.RNA-Seq.chimeric.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.chimeric.gdc_realn.bam 84359473 BAM chimeric harmonized CPTAC3 36f97a15-26a4-4acc-a022-db6cd74e77ad 176173ec52a75620876156b1bc772fc3 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.RNA-Seq.genomic.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.genomic.gdc_realn.bam 9191341732 BAM genomic harmonized CPTAC3 53358b70-1402-49aa-ac8d-4894d4ee1548 6c900d843295ca112cd052a8033d7728 {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.RNA-Seq.genomic.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.genomic.gdc_realn.bam 8208033794 BAM genomic harmonized CPTAC3 6370580c-0281-48f7-bec9-b7954b8259d8 cd71febf5ef66eaf9a6d6e5dd2920a96 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.RNA-Seq.S12_L003_R1.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R1_001.fastq.gz 4454069276 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 b7c4f99d-2a4c-4653-b15d-48e37b8a0288 52f55dcd3068a4daf1289d476a4e37db {"aliquot_tag": "ALQ_594f37ef", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.RNA-Seq.S12_L003_R2.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R2_001.fastq.gz 5026528246 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 22b21306-98f0-4942-a137-1bc414a5a355 e0e45e9b46f27d11b4002c9f78d67b59 {"aliquot_tag": "ALQ_594f37ef", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.RNA-Seq.S25_L007_R1.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R1_001.fastq.gz 3892919040 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 6d360c80-2b51-40ad-8bf9-de80d1e6ba76 0f5ad61e54dca3101623d495962e3b56 {"aliquot_tag": "ALQ_3a34e2df", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.RNA-Seq.S25_L007_R2.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R2_001.fastq.gz 4189513819 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 108bc5a0-64b9-4b7a-be84-884cc5f5e7fe e93cd0b5ce11ac8873e1b712f1895f20 {"aliquot_tag": "ALQ_3a34e2df", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.RNA-Seq.transcriptome.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.transcriptome.gdc_realn.bam 11486185853 BAM transcriptome harmonized CPTAC3 3eb5b6ac-f7af-4da4-8f88-7f02ab43212d 8067964601f9eeefd3e8118f89fa071e {"aliquot_tag": "ALQ_594f37ef", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.RNA-Seq.transcriptome.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.transcriptome.gdc_realn.bam 9103820075 BAM transcriptome harmonized CPTAC3 1650337d-8576-4e22-b885-1456d0f5a1c6 4ca699bb4511cbce3172bc0bf438b9f3 {"aliquot_tag": "ALQ_3a34e2df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.WGS.N C3L-03982 LSCC WGS blood_normal CPT0258600002 CPT0258600002.WholeGenome.RP-2158.bam 23898985421 BAM submitted_aligned CPTAC3 3d76dc67-8732-4f2a-ac46-fd6acead75d8 771cd5c2145082e651953445fbdb0d90 {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03982.WGS.N.hg38 C3L-03982 LSCC WGS blood_normal CPT0258600002 7f608378-bf18-46f6-8c8b-9daca5743541_wgs_gdc_realn.bam 72207406429 BAM harmonized CPTAC3 a801f2d8-be1d-4543-a17c-549e5c03f77b 4afdf0020d30f0a0c178457f6e8f859a {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03982.WGS.T C3L-03982 LSCC WGS tumor CPT0258440007 CPT0258440007.WholeGenome.RP-2158.bam 26240888901 BAM submitted_aligned CPTAC3 dd633f78-e6b6-4d62-ba2b-26bac8c4ee8d fbb0f51a8ec3db2c57323fc35bbc6604 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.WGS.T.hg38 C3L-03982 LSCC WGS tumor CPT0258440007 562209b1-ac63-4e61-bb49-0162738073fb_wgs_gdc_realn.bam 75561253531 BAM harmonized CPTAC3 66ac0d8c-a8a1-46e0-86be-8f241588cd47 0e64c2ec50a8db945c2a249607023f28 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.WXS.A C3L-03982 LSCC WXS tissue_normal CPT0258510006 CPT0258510006.WholeExome.RP-1303.bam 19684837004 BAM submitted_aligned CPTAC3 dad23e8a-2ea7-4db8-b9ee-3e29ff2a7864 66faeff205973d0f510bc8c52cf22952 {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.WXS.A.hg38 C3L-03982 LSCC WXS tissue_normal CPT0258510006 e4883714-590f-424b-93aa-dcd4f2cbabd5_wxs_gdc_realn.bam 26748563048 BAM harmonized CPTAC3 08494c78-a375-407c-adab-ab45a069afd7 73dcddc7d54f8828869d598b90dcc7bf {"aliquot_tag": "ALQ_c9f02a7e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03982.WXS.N C3L-03982 LSCC WXS blood_normal CPT0258600002 CPT0258600002.WholeExome.RP-1303.bam 24777374607 BAM submitted_aligned CPTAC3 921d8c19-e502-45eb-b8d4-8da65ebc9b99 d3cc8100c836cf3187427268b01952a4 {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03982.WXS.N.hg38 C3L-03982 LSCC WXS blood_normal CPT0258600002 7f608378-bf18-46f6-8c8b-9daca5743541_wxs_gdc_realn.bam 33624683403 BAM harmonized CPTAC3 99f47253-36d1-42e6-b856-65e3e5021ff1 92930ac6fd3ba8ac48feca8c433dec17 {"aliquot_tag": "ALQ_7569b579", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03982.WXS.T C3L-03982 LSCC WXS tumor CPT0258440007 CPT0258440007.WholeExome.RP-1303.bam 21400925085 BAM submitted_aligned CPTAC3 d457d04b-43fb-4c8a-9e15-008b8fb38861 557c1ff45aae936bbc541ded450f57d6 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03982.WXS.T.hg38 C3L-03982 LSCC WXS tumor CPT0258440007 562209b1-ac63-4e61-bb49-0162738073fb_wxs_gdc_realn.bam 29261864840 BAM harmonized CPTAC3 350d712d-7dee-494c-82a1-dfeb066cff9e 32bab7686471d857551a1849479cd066 {"aliquot_tag": "ALQ_bd4b463d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03984.MethArray.Green.A C3L-03984 LUAD Methylation_Array tissue_normal CPT0242720006 203561450062_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c76808b7-7a00-4001-8ce8-7bdde6d0ae56 d4b47501ad70713a2c1235aa90863149 {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.MethArray.Green.T C3L-03984 LUAD Methylation_Array tumor CPT0242670007 203561450062_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 94e244db-ab48-4cf7-b45c-b7461095fbee 6596bf93371ffc1d86eb1cb1090e4603 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.MethArray.Red.A C3L-03984 LUAD Methylation_Array tissue_normal CPT0242720006 203561450062_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 52c33b5e-ae9b-4db7-8f5a-b6963c05b7c6 edafa2bde1f082994e0c3f1bc443bfad {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.MethArray.Red.T C3L-03984 LUAD Methylation_Array tumor CPT0242670007 203561450062_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 5d3a5173-6664-4d19-ac07-ebb61e144475 7867081670940698e31a626f8dac5762 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.miRNA-Seq.A.hg38 C3L-03984 LUAD miRNA-Seq tissue_normal CPT0242720009 e6c9b1fc-63f2-47e9-aaf7-11821e4aa16d_mirnaseq_gdc_realn.bam 230822553 BAM harmonized CPTAC3 539252d7-bba5-4797-976b-cb93aacafab0 669ec40149850bc681f55706a764a2c2 {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.miRNA-Seq.S41_L007_R1.T C3L-03984 LUAD miRNA-Seq tumor CPT0242670010 190722_UNC31-K00269_0234_AH7VGTBBXY_ATCACG_S41_L007_R1_001.unaln.bam 188211240 BAM S41_L007_R1 submitted_unaligned CPTAC3 f273cd4e-707f-49ad-ae21-d64b133c3df1 171115e5d962490f93d57a27697d3021 {"aliquot_tag": "ALQ_588666d4", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.miRNA-Seq.S46_L007_R1.A C3L-03984 LUAD miRNA-Seq tissue_normal CPT0242720009 190712_UNC32-K00270_0192_BH7HL3BBXY_GAGTGG_S46_L007_R1_001.unaln.bam 198411658 BAM S46_L007_R1 submitted_unaligned CPTAC3 61844e3c-3595-4206-89f1-c99b6950ed13 940506c76827a43277a587e13d05b1a5 {"aliquot_tag": "ALQ_3bfdb3e4", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.miRNA-Seq.T.hg38 C3L-03984 LUAD miRNA-Seq tumor CPT0242670010 49a2c39a-2551-4b94-8510-1d03c86a33ea_mirnaseq_gdc_realn.bam 208383199 BAM harmonized CPTAC3 87391410-7d8f-48c7-9f34-494df398852b ee97c1f2051f5edbc8f532f880124824 {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.RNA-Seq.chimeric.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.chimeric.gdc_realn.bam 33271643 BAM chimeric harmonized CPTAC3 13affa53-cce3-4a30-b206-907c03f93cac 8070bcd7512c7b7d2df926194ebce36e {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.RNA-Seq.chimeric.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.chimeric.gdc_realn.bam 48934657 BAM chimeric harmonized CPTAC3 313fde57-a613-49fb-8ed9-08354a3f6106 2f267f0bd55ff550213986a1f13cc4c8 {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.RNA-Seq.genomic.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.genomic.gdc_realn.bam 7226578047 BAM genomic harmonized CPTAC3 4a8b2560-5c73-4230-98c1-737b150b0aab 2fa9b1c479575fdcbded3f1fe5c5c937 {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.RNA-Seq.genomic.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.genomic.gdc_realn.bam 9945258468 BAM genomic harmonized CPTAC3 e6a123e8-6409-46c0-a3c2-78ad746329e7 3534086b69a7ed146debf9c83c81cd5c {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.RNA-Seq.S31_L008_R1.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4763611919 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 0fabed7e-bbe4-4c69-983f-149ab16d89f2 706abaa59e8a5c756df58a390d0fdd1e {"aliquot_tag": "ALQ_588666d4", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.RNA-Seq.S31_L008_R2.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 5171983816 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 2e00e27b-a33a-4614-ad29-4948341280a7 55361e40f5e077670d684c01d19fa254 {"aliquot_tag": "ALQ_588666d4", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.RNA-Seq.S4_L001_R1.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R1_001.fastq.gz 2931632052 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 f1aa105a-4e47-4ca3-a5b2-e95de86ba8f1 29cac178cf189749df516e5e4e9107f0 {"aliquot_tag": "ALQ_3bfdb3e4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.RNA-Seq.S4_L001_R2.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R2_001.fastq.gz 3359972556 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 3da66fa0-da26-4240-b0c9-432abcc2c74d 6ce3e7f13a0e3827c41e49c23e9bdad6 {"aliquot_tag": "ALQ_3bfdb3e4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.RNA-Seq.transcriptome.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.transcriptome.gdc_realn.bam 6390235601 BAM transcriptome harmonized CPTAC3 8c15c771-05b7-48ff-8bcf-347aaf9b9849 eea7192d169f4320abde15131a881204 {"aliquot_tag": "ALQ_3bfdb3e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.RNA-Seq.transcriptome.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.transcriptome.gdc_realn.bam 11180776254 BAM transcriptome harmonized CPTAC3 e47346fd-0f2c-4afe-b813-4a0e8dc0c947 a6ff43d508906eb2b6bfb3efc761e7ce {"aliquot_tag": "ALQ_588666d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.WGS.N C3L-03984 LUAD WGS blood_normal CPT0242830002 CPT0242830002.WholeGenome.RP-1303.bam 57814826092 BAM submitted_aligned CPTAC3 c903faa9-c3df-41c5-a0b2-57d51401c272 a3405adc4d2cec58b858cd92d6446c0c {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03984.WGS.N.hg38 C3L-03984 LUAD WGS blood_normal CPT0242830002 699d16f1-8b4b-4b48-9876-44499a56b13a_wgs_gdc_realn.bam 84479223902 BAM harmonized CPTAC3 00a2f18b-73ee-4edb-85ea-9eaabb554b8a 21ef541d43cdd512e89e5612d9a21cf3 {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03984.WGS.T C3L-03984 LUAD WGS tumor CPT0242670007 CPT0242670007.WholeGenome.RP-1303.bam 72781420557 BAM submitted_aligned CPTAC3 ce5eed28-318d-43dc-aab0-1915eef36591 3ae448dddd0d2a1734564dc954fd8e92 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.WGS.T.hg38 C3L-03984 LUAD WGS tumor CPT0242670007 5a5eb3fb-fcca-47bf-be8e-7431634a2361_wgs_gdc_realn.bam 105709164883 BAM harmonized CPTAC3 ad4247d2-7bf6-452f-bf98-b8e7a65aa17d 174ab7b63369f48253eebefca1ca1580 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.WXS.A C3L-03984 LUAD WXS tissue_normal CPT0242720006 CPT0242720006.WholeExome.RP-1303.bam 23817974125 BAM submitted_aligned CPTAC3 d846ca0d-234e-489d-92ff-1c545b088c7d dcc9a792fd81032b2f537b0c2aae8f38 {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.WXS.A.hg38 C3L-03984 LUAD WXS tissue_normal CPT0242720006 fa5b2f5f-1ecb-40e4-96a3-a3157c9969ba_wxs_gdc_realn.bam 32909130972 BAM harmonized CPTAC3 1cff923a-28e6-4244-a6da-9b6fe979ea94 35ba4d76b95c8462d160c1f9bfbf1cb9 {"aliquot_tag": "ALQ_ab42ae75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03984.WXS.N C3L-03984 LUAD WXS blood_normal CPT0242830002 CPT0242830002.WholeExome.RP-1303.bam 28307582398 BAM submitted_aligned CPTAC3 85571289-b8e1-47b3-804e-d0c1f611e82f 834d324a6197bb8b92283c6436bf7f64 {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03984.WXS.N.hg38 C3L-03984 LUAD WXS blood_normal CPT0242830002 699d16f1-8b4b-4b48-9876-44499a56b13a_wxs_gdc_realn.bam 38957144817 BAM harmonized CPTAC3 c5aeb319-af76-443a-b5bb-a567c314638f c6751d011bb410344859a15e86cfc745 {"aliquot_tag": "ALQ_6019f109", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03984.WXS.T C3L-03984 LUAD WXS tumor CPT0242670007 CPT0242670007.WholeExome.RP-1303.bam 24550857261 BAM submitted_aligned CPTAC3 7fdee571-3a20-4482-b062-8e787409a52d 82aa8a32fe1511ae0d8bb889f23a62f7 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03984.WXS.T.hg38 C3L-03984 LUAD WXS tumor CPT0242670007 5a5eb3fb-fcca-47bf-be8e-7431634a2361_wxs_gdc_realn.bam 33755838720 BAM harmonized CPTAC3 872e901e-d6f0-471a-936a-561d8a8e1e3b 81d3e2d0da4cfe460699dffb5fd1aaf6 {"aliquot_tag": "ALQ_dff9c236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.MethArray.Green.A C3L-03985 LUAD Methylation_Array tissue_normal CPT0254910007 203273630261_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 408680b9-c38b-41c7-acb0-dc54db8d2ecf 66b6c0be72d0d8d1e2d25c4760bbab31 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.MethArray.Green.T C3L-03985 LUAD Methylation_Array tumor CPT0254880007 203561450048_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bc0ca083-150f-4926-8177-3a0be4a8827e 93266d3f0d6b0bda0914af49ecc13188 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.MethArray.Red.A C3L-03985 LUAD Methylation_Array tissue_normal CPT0254910007 203273630261_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 99f6fe5d-c6a6-4b96-9c7a-009a017c3448 849d381df00b19bbf0fd91b9d3ab04c2 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.MethArray.Red.T C3L-03985 LUAD Methylation_Array tumor CPT0254880007 203561450048_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 b74baad4-4215-4190-b9bc-ac1914a064d5 6a6f96c19b2b289b758a544e702be30e {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.miRNA-Seq.A.hg38 C3L-03985 LUAD miRNA-Seq tissue_normal CPT0254910010 2fac4b37-e831-494b-aed3-25a955786190_mirnaseq_gdc_realn.bam 180897228 BAM harmonized CPTAC3 dd465527-ee64-4ba3-a81c-48c07af4699a ff8acd5a928313c51bd19595cb64a162 {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.miRNA-Seq.S35_L006_R1.A C3L-03985 LUAD miRNA-Seq tissue_normal CPT0254910010 190722_UNC31-K00269_0234_AH7VGTBBXY_TAATCG_S35_L006_R1_001.unaln.bam 161100316 BAM S35_L006_R1 submitted_unaligned CPTAC3 0233fa53-835e-4bfc-9c6f-a372a0187027 4ca986508d8b58246f69fe582bc681a3 {"aliquot_tag": "ALQ_89ea1405", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.miRNA-Seq.S43_L007_R1.T C3L-03985 LUAD miRNA-Seq tumor CPT0254880010 190722_UNC31-K00269_0234_AH7VGTBBXY_TTAGGC_S43_L007_R1_001.unaln.bam 178285923 BAM S43_L007_R1 submitted_unaligned CPTAC3 1995c4e5-0b6f-40c6-b269-5de1fd1da6ec d20cc97e7aeebdc50ef8024336e30869 {"aliquot_tag": "ALQ_4fa6a5d1", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.miRNA-Seq.T.hg38 C3L-03985 LUAD miRNA-Seq tumor CPT0254880010 6331c93c-43e4-44fd-91ef-e362aa6b1883_mirnaseq_gdc_realn.bam 196129874 BAM harmonized CPTAC3 c9d00c12-0087-4830-b9d4-25417fbd9de1 23a1f8fab79b562d09a8b118843d136b {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.RNA-Seq.chimeric.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.chimeric.gdc_realn.bam 28231823 BAM chimeric harmonized CPTAC3 070f0e63-696e-443d-99ab-dee313947358 0190e6a7d47674ab62c30dd67f2d2dd3 {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.RNA-Seq.chimeric.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.chimeric.gdc_realn.bam 39854452 BAM chimeric harmonized CPTAC3 07259cf4-0b74-49b8-95d1-cbb76b19b682 3dce394010bbd208b5abebb820c0800f {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.RNA-Seq.genomic.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.genomic.gdc_realn.bam 10075483300 BAM genomic harmonized CPTAC3 1b68d86f-1b36-4380-b4a9-f7cfdf0bdf6e 9b1c820db989fa550c0e0664f788725e {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.RNA-Seq.genomic.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.genomic.gdc_realn.bam 9589937083 BAM genomic harmonized CPTAC3 731759f7-36bf-43e1-902e-84d97b58d727 e47e3ccd67c3b0fe671579f0bfc07cab {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.RNA-Seq.S25_L007_R1.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 4489985968 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 8a4011af-5392-4312-8667-f6c36e0f18c8 94e60186aa70f78f79fab29d1c3e7bd5 {"aliquot_tag": "ALQ_4fa6a5d1", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.RNA-Seq.S25_L007_R2.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 4876931429 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 1268677c-512f-4f58-9b5e-053863b2aed8 0c56883573ec6b3c947b0d8899a0029d {"aliquot_tag": "ALQ_4fa6a5d1", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.RNA-Seq.S8_L002_R1.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 3662036527 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 54dfb0af-453c-4b8e-a8d9-d04e7281412b a19ca37c44df8d3022de61476144f75c {"aliquot_tag": "ALQ_89ea1405", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.RNA-Seq.S8_L002_R2.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 4242134507 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 6425132a-97b4-43cc-9fbe-3b44d2646263 8b8b658407c66eb2b66e4494a7c96575 {"aliquot_tag": "ALQ_89ea1405", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.RNA-Seq.transcriptome.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.transcriptome.gdc_realn.bam 7764835733 BAM transcriptome harmonized CPTAC3 dcbf1ff5-ffe9-4cb8-a6c2-93d9fcad50b5 db4b2ab973a61ea454d399cb1fc80b5c {"aliquot_tag": "ALQ_89ea1405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.RNA-Seq.transcriptome.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.transcriptome.gdc_realn.bam 11620197258 BAM transcriptome harmonized CPTAC3 fe6c764b-e896-48a2-9e95-19760d13d032 8530ff2de40883b020b5c89dd6ceb15d {"aliquot_tag": "ALQ_4fa6a5d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.WGS.N C3L-03985 LUAD WGS blood_normal CPT0255020002 CPT0255020002.WholeGenome.RP-1303.bam 83398337617 BAM submitted_aligned CPTAC3 14147a08-ab16-45ae-8d79-ff58b0e6b3bd 8d1b39db1b4c6f46d01b1e01c3907063 {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03985.WGS.N.hg38 C3L-03985 LUAD WGS blood_normal CPT0255020002 ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wgs_gdc_realn.bam 122987289593 BAM harmonized CPTAC3 5aba0e04-2e1f-4ae7-918c-8261be9bcddb ab0526cfc51bc1e18cc3b6dc4952730d {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03985.WGS.T C3L-03985 LUAD WGS tumor CPT0254880007 CPT0254880007.WholeGenome.RP-1303.bam 57878855669 BAM submitted_aligned CPTAC3 773d767b-8f4b-4319-bc59-50daaa452b47 68275bde23ef4f09e43ddb6fdbf6ccb7 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.WGS.T.hg38 C3L-03985 LUAD WGS tumor CPT0254880007 25c995d7-c22e-4ac7-8e76-bc68a944f046_wgs_gdc_realn.bam 84388858786 BAM harmonized CPTAC3 836e8686-90ce-4136-9115-edaddaa819c6 3ef394c91f28ad29ce20c8d229adfb19 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.WXS.A C3L-03985 LUAD WXS tissue_normal CPT0254910007 CPT0254910007.WholeExome.RP-1303.bam 24555609511 BAM submitted_aligned CPTAC3 38fa9d16-36da-4256-bd48-aa375a0c0c65 b134ed1c432899ea1de284c156e211f7 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.WXS.A.hg38 C3L-03985 LUAD WXS tissue_normal CPT0254910007 91d0e4bf-020f-418a-b0f2-ff88830ec283_wxs_gdc_realn.bam 33996992054 BAM harmonized CPTAC3 8d13bc57-6d8f-4a6e-adb7-1e49d5a9b4ac a99b7d07a43f2262d664d3a5cc7c30a9 {"aliquot_tag": "ALQ_e95b0e7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-03985.WXS.N C3L-03985 LUAD WXS blood_normal CPT0255020002 CPT0255020002.WholeExome.RP-1303.bam 27890591034 BAM submitted_aligned CPTAC3 c978865c-9bda-47f2-815b-e230f455ce60 3dfe09660714c16cae26c1566e2ba1f0 {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03985.WXS.N.hg38 C3L-03985 LUAD WXS blood_normal CPT0255020002 ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wxs_gdc_realn.bam 38440328540 BAM harmonized CPTAC3 ab390407-839f-4c7f-8521-22d845feb009 ac8817aba92e0d3aa493ac623024fb90 {"aliquot_tag": "ALQ_b82764c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-03985.WXS.T C3L-03985 LUAD WXS tumor CPT0254880007 CPT0254880007.WholeExome.RP-1303.bam 28916081753 BAM submitted_aligned CPTAC3 7b08630c-e151-4838-a4f1-16bab58950bb 37f618b35b58a049e74b45319c846955 {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03985.WXS.T.hg38 C3L-03985 LUAD WXS tumor CPT0254880007 25c995d7-c22e-4ac7-8e76-bc68a944f046_wxs_gdc_realn.bam 41005732418 BAM harmonized CPTAC3 173ce51f-064d-4d0a-9c3b-845c8baa3b4a c41909af27d51b2151dd12a5994d74ae {"aliquot_tag": "ALQ_c8d90133", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03987.MethArray.Green.A C3L-03987 LSCC Methylation_Array tissue_normal CPT0252590009 204367490061_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e2acd2e8-dd92-4910-a080-f175402e11ef e33ddbc169834e48756e9f0d8d31e8c6 {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.MethArray.Green.T C3L-03987 LSCC Methylation_Array tumor CPT0252540006 204372030164_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5c1d8b35-1a5a-46ca-a8c2-4c627d5e132f ac740bdbcd4af4a11870c70568896610 {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.MethArray.Red.A C3L-03987 LSCC Methylation_Array tissue_normal CPT0252590009 204367490061_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 e4bd94ef-e5b3-4b06-bdf3-7a2216b62e30 ee54fc3f9a82989baa723426f73fcd10 {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.MethArray.Red.T C3L-03987 LSCC Methylation_Array tumor CPT0252540006 204372030164_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 40be6bc5-91cc-4942-9478-9ce06a638148 a61e127ba8f0482568fd74bab6afb757 {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.miRNA-Seq.A.hg38 C3L-03987 LSCC miRNA-Seq tissue_normal CPT0252590006 78a3b6e2-1284-4a64-b2a5-69d907a6a5db_mirnaseq_gdc_realn.bam 325626703 BAM harmonized CPTAC3 557b919c-13f5-4d9f-980a-2ae3e7158bb4 324a781b94f79b6c4ec5775ddc72396c {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.miRNA-Seq.S15_L001_R1.T C3L-03987 LSCC miRNA-Seq tumor CPT0252540013 200325_UNC31-K00269_0272_AHHC2NBBXY_CTATAC_S15_L001_R1_001.unaln.bam 261348339 BAM S15_L001_R1 submitted_unaligned CPTAC3 2d37ae53-7b41-4f05-9d1c-74b2992d79f2 149325268fcd4e61c57c619f6f247e85 {"aliquot_tag": "ALQ_cc113f8e", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.miRNA-Seq.S39_L006_R1.A C3L-03987 LSCC miRNA-Seq tissue_normal CPT0252590006 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTATAC_S39_L006_R1_001.unaln.bam 287186555 BAM S39_L006_R1 submitted_unaligned CPTAC3 306b11f0-b495-43db-9ebf-74ded40adab6 c6f1e0f4005eaa8b3cc40aab513a7275 {"aliquot_tag": "ALQ_5df03ef1", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.miRNA-Seq.T.hg38 C3L-03987 LSCC miRNA-Seq tumor CPT0252540013 e44c8fb3-1eca-4b5a-9289-1cdc6e2d8650_mirnaseq_gdc_realn.bam 281426554 BAM harmonized CPTAC3 f74cd8f8-afff-44db-93d9-c85841d4738b 39d13b6ef5aec9e6c4d906d9d47b9025 {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.RNA-Seq.chimeric.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.chimeric.gdc_realn.bam 32723132 BAM chimeric harmonized CPTAC3 b356005d-8a36-40ca-9fd0-8acc277f12eb 9dd081c3510de64b897211ec25860a63 {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.RNA-Seq.chimeric.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.chimeric.gdc_realn.bam 85666900 BAM chimeric harmonized CPTAC3 4e5720dd-c3fa-430a-89f7-952a252ae9cd 9725c15e23ee39b4c04e2bcb0bc419e0 {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.RNA-Seq.genomic.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.genomic.gdc_realn.bam 8558293208 BAM genomic harmonized CPTAC3 a4f14f87-7a07-4004-90b2-3a2407ad5264 158b9554914b2da98a86138066041bca {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.RNA-Seq.genomic.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.genomic.gdc_realn.bam 7712339248 BAM genomic harmonized CPTAC3 00e7e7a6-a173-40f0-9142-ec6a649decac 201700b9e3eff79398b45deaedfbef5a {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.RNA-Seq.S23_L006_R1.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 3917487475 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 8a661ca8-7570-4cba-a726-78205f60aa1b 8be71db0297d31751134612fb6ab7291 {"aliquot_tag": "ALQ_5df03ef1", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.RNA-Seq.S23_L006_R1.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R1_001.fastq.gz 3904992759 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 f67c42b8-3e96-439f-9be0-26efce378646 c268ff318fe8a57ef210444c2048eaf9 {"aliquot_tag": "ALQ_cc113f8e", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.RNA-Seq.S23_L006_R2.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4781947706 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 aff407f2-bcab-4cb6-8336-5444bff8bb06 7386a790b34f08bbb10fd1d3997f06ae {"aliquot_tag": "ALQ_5df03ef1", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.RNA-Seq.S23_L006_R2.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R2_001.fastq.gz 4106265099 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 d6acd99d-46a3-4459-a08f-e4a4b11ee4d0 e05c3424e742a083f09bd1c653a8fe48 {"aliquot_tag": "ALQ_cc113f8e", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.RNA-Seq.transcriptome.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.transcriptome.gdc_realn.bam 9523577768 BAM transcriptome harmonized CPTAC3 68b1f4c7-7062-43f3-b11a-c21ecb2e5bdd 5a4f559669996f30cca0686c59cdbeb9 {"aliquot_tag": "ALQ_5df03ef1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.RNA-Seq.transcriptome.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.transcriptome.gdc_realn.bam 10910912544 BAM transcriptome harmonized CPTAC3 c0895db7-26ee-4d22-86be-9a6f4262819b 6383b083b45413ff2aa0fd60c00ed9be {"aliquot_tag": "ALQ_cc113f8e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.WGS.N C3L-03987 LSCC WGS blood_normal CPT0252700002 CPT0252700002.WholeGenome.RP-2158.bam 21229115177 BAM submitted_aligned CPTAC3 8e8419d5-650d-4b80-b9c6-a5549c322550 e8355a371bdf55693037a6512a5ecc5c {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03987.WGS.N.hg38 C3L-03987 LSCC WGS blood_normal CPT0252700002 00f9704c-e6ea-446b-ac12-1f310e969a2b_wgs_gdc_realn.bam 63542945824 BAM harmonized CPTAC3 c88a46c1-fe32-430b-a123-5a297afef1c0 ef6eacc58aee6248b87f67a02bdb3157 {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03987.WGS.T C3L-03987 LSCC WGS tumor CPT0252540006 CPT0252540006.WholeGenome.RP-2158.bam 25941364632 BAM submitted_aligned CPTAC3 f03ce40b-71d0-41c3-ae24-6a6eb64b34fb 1b38c1e8238ef8dc328a2ca5205ada37 {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.WGS.T.hg38 C3L-03987 LSCC WGS tumor CPT0252540006 a70d0e10-82c3-4cf3-b3a3-fc3fed293587_wgs_gdc_realn.bam 78541080120 BAM harmonized CPTAC3 832d5ddd-2ebc-4840-92a7-c0f25855ec1e ea7e7c2cdc6378584e78f9d11765a86a {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.WXS.A C3L-03987 LSCC WXS tissue_normal CPT0252590009 CPT0252590009.WholeExome.RP-1303.bam 20783240479 BAM submitted_aligned CPTAC3 e2f11f45-98c9-4f38-a4fd-5effee03ad44 baba171f396a099d5b92d533ea4929be {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.WXS.A.hg38 C3L-03987 LSCC WXS tissue_normal CPT0252590009 6f9f9b52-e1c1-425e-85ba-8300ccb37528_wxs_gdc_realn.bam 28822313241 BAM harmonized CPTAC3 d8be566f-fa07-4da4-b1dc-8577eaa47579 36e66edb186308ac341f054b4f5b40dd {"aliquot_tag": "ALQ_cd4f2360", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03987.WXS.N C3L-03987 LSCC WXS blood_normal CPT0252700002 CPT0252700002.WholeExome.RP-1303.bam 20722361996 BAM submitted_aligned CPTAC3 9b2e232d-424d-4114-a94e-d9778a7895cd faca83ab6789a715a48f5771390b699f {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03987.WXS.N.hg38 C3L-03987 LSCC WXS blood_normal CPT0252700002 00f9704c-e6ea-446b-ac12-1f310e969a2b_wxs_gdc_realn.bam 27830022718 BAM harmonized CPTAC3 1227fac0-e088-48bf-87be-e91b7a5a7292 0c675a7a2a89dd59f10f83e7499a757a {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-03987.WXS.T C3L-03987 LSCC WXS tumor CPT0252540006 CPT0252540006.WholeExome.RP-1303.bam 32209599109 BAM submitted_aligned CPTAC3 b9048b2b-a34f-4e83-b0a7-f74440cabc52 2b53e7803b3a1f255fcb32eb69daeebf {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03987.WXS.T.hg38 C3L-03987 LSCC WXS tumor CPT0252540006 a70d0e10-82c3-4cf3-b3a3-fc3fed293587_wxs_gdc_realn.bam 43630345732 BAM harmonized CPTAC3 b07e8ade-3e51-45c1-a170-5c9eed214522 a0b00bb5e32f6935d2fd2c2a25cbafcf {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04013.MethArray.Green.A C3L-04013 LSCC Methylation_Array tissue_normal CPT0233330006 203220070171_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3b1e79f4-043c-4da0-bb92-8865bbd780f6 9fb669cf7c33c0b2fc197330e8433f1f {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.MethArray.Green.T C3L-04013 LSCC Methylation_Array tumor CPT0233320006 203219670117_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d9c4f0cb-d26b-46c6-8937-9e7a19a909ab 2aae3ac1a73548f64b33ee1a00f67abf {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.MethArray.Red.A C3L-04013 LSCC Methylation_Array tissue_normal CPT0233330006 203220070171_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6233e085-48e4-465e-a6a1-fe3c48ce6f12 c0fe201ce0588ce995aa3e2fcb6a9c26 {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.MethArray.Red.T C3L-04013 LSCC Methylation_Array tumor CPT0233320006 203219670117_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 4b4d2bfb-cc71-46c2-86a6-9c6f32a4d0e5 321e23ec09de4ef6fb8e6a0e1d3d72a4 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.miRNA-Seq.A.hg38 C3L-04013 LSCC miRNA-Seq tissue_normal CPT0233330009 e9929fae-5f4a-44f3-a382-e4ddb1c9284a_mirnaseq_gdc_realn.bam 203889965 BAM harmonized CPTAC3 b83b7ac4-3c9f-4d15-856e-33e28ad3bb18 b24fa0dc2046a4b7973bfcf0997b4d1a {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.miRNA-Seq.S15_L005_R1.A C3L-04013 LSCC miRNA-Seq tissue_normal CPT0233330009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCAACA_S15_L005_R1_001.unaln.bam 180938970 BAM S15_L005_R1 submitted_unaligned CPTAC3 07d0efd5-5c21-48ea-a5ea-cd9538270dff 00fb15cbdc3a6b6a8e17fb16944cabab {"aliquot_tag": "ALQ_31bedaef", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.miRNA-Seq.S48_L004_R1.T C3L-04013 LSCC miRNA-Seq tumor CPT0233320009 190206_UNC31-K00269_0191_AH2WY5BBXY_GAGTGG_S48_L004_R1_001.unaln.bam 199983012 BAM S48_L004_R1 submitted_unaligned CPTAC3 a6f68360-4b2f-42f9-a43a-7f5ab41387a0 11851a2dea2bf5038bed8e95c9e43401 {"aliquot_tag": "ALQ_cdef35f", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.miRNA-Seq.T.hg38 C3L-04013 LSCC miRNA-Seq tumor CPT0233320009 794bdc00-aaee-4a7f-9547-5a26200cf038_mirnaseq_gdc_realn.bam 223147285 BAM harmonized CPTAC3 e14b1d68-5167-43a6-873b-99a2478f4ae9 ddd2ae2d81dcb5460aab6d30771a60f5 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.RNA-Seq.chimeric.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.chimeric.gdc_realn.bam 174168661 BAM chimeric harmonized CPTAC3 dd3cc960-8deb-4e8c-8dcf-0407e0febde8 a24a6a999ea2ee9045b4cec9e6cca791 {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.RNA-Seq.chimeric.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.chimeric.gdc_realn.bam 248318439 BAM chimeric harmonized CPTAC3 23da7d40-4dff-4b1f-a559-00a9b3e1cfcd b195275f3062ac69b9f35ecf439055b5 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.RNA-Seq.genomic.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.genomic.gdc_realn.bam 8226544580 BAM genomic harmonized CPTAC3 970ffa4a-4984-4b9d-9c4e-9e3d8924524e 3f5cf34827af063a87557ef061263fdd {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.RNA-Seq.genomic.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.genomic.gdc_realn.bam 9214484120 BAM genomic harmonized CPTAC3 3a854c09-9213-45d0-bc40-407f107276f5 2e3738bbc620fb92d4e3a6c219345640 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.RNA-Seq.S13_L004_R1.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 4483331608 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 e24c880a-0b28-442b-b725-01e230d25b72 2b97d5d319870d82f5f34e8c85bc4044 {"aliquot_tag": "ALQ_cdef35f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.RNA-Seq.S13_L004_R2.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 4917643641 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 13a7746f-a260-4fe9-9ab8-7d9be7fc0a47 4cf7a6c1da48a7f0888ace4529e53f48 {"aliquot_tag": "ALQ_cdef35f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.RNA-Seq.S5_L008_R1.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R1_001.fastq.gz 3931874677 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 be7501b0-9269-4db7-9c83-2fd15e5e71cf a86e77434372f9fe52aa2057cc44403a {"aliquot_tag": "ALQ_31bedaef", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.RNA-Seq.S5_L008_R2.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R2_001.fastq.gz 4439839166 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 2394d37f-55b6-4fe9-b52b-97ea7aa92523 b32c77f32f23ad96a80e18ee33d7585d {"aliquot_tag": "ALQ_31bedaef", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.RNA-Seq.transcriptome.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.transcriptome.gdc_realn.bam 9820171059 BAM transcriptome harmonized CPTAC3 7df76a2b-9476-4af8-9bae-9d1ff00578f9 1c4898aebecb120400714412d79f9a42 {"aliquot_tag": "ALQ_31bedaef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.RNA-Seq.transcriptome.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.transcriptome.gdc_realn.bam 9603735662 BAM transcriptome harmonized CPTAC3 59b85307-3b8e-411b-a0ef-13671d9f99cd 3399f86e1a26ed53d1f60b0f681bc0e6 {"aliquot_tag": "ALQ_cdef35f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.WGS.N C3L-04013 LSCC WGS blood_normal CPT0233440002 CPT0233440002.WholeGenome.RP-1303.bam 63967020461 BAM submitted_aligned CPTAC3 98ffabf1-0c54-45ef-ae4c-19c8684ea085 84832f01254047a01d89cfffa60db6fc {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04013.WGS.N.hg38 C3L-04013 LSCC WGS blood_normal CPT0233440002 0e3452f6-3bfd-46b5-b974-1b142a82845e_wgs_gdc_realn.bam 92470461052 BAM harmonized CPTAC3 11e71a75-c179-414d-a78f-03aa26e8ef3b ab9387e1eebdd3c74d01f4d1d056dd0b {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04013.WGS.T C3L-04013 LSCC WGS tumor CPT0233320006 CPT0233320006.WholeGenome.RP-1303.bam 60923004927 BAM submitted_aligned CPTAC3 c861686d-6619-48dc-b9f3-56f616d43649 2bcc51d8fc19d63adb8e344767267039 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.WGS.T.hg38 C3L-04013 LSCC WGS tumor CPT0233320006 7f8bd24f-62f5-4fbc-8633-378805089c7c_wgs_gdc_realn.bam 88135792490 BAM harmonized CPTAC3 fa19974e-c452-4f58-ac86-f1a1e9d5439d c1a327703a6a12d85615b9639c64de94 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.WXS.A C3L-04013 LSCC WXS tissue_normal CPT0233330006 CPT0233330006.WholeExome.RP-1303.bam 18608598102 BAM submitted_aligned CPTAC3 df5fc839-079e-416a-8fe8-c457828e7a86 d0986a92f9cf70aaf0ebc7a60e42a469 {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.WXS.A.hg38 C3L-04013 LSCC WXS tissue_normal CPT0233330006 79b4a87a-5b1d-4101-ba62-9b5679d17530_wxs_gdc_realn.bam 25688883189 BAM harmonized CPTAC3 48429458-bd82-422f-bc90-1308276a3d92 c89f600f94e2c28bc87497c15b43c1af {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04013.WXS.N C3L-04013 LSCC WXS blood_normal CPT0233440002 CPT0233440002.WholeExome.RP-1303.bam 20116857920 BAM submitted_aligned CPTAC3 698cdfe2-1dd5-453e-a29a-f84d9cf662a5 323e4c1fb73d5bad777eb7800c35fbb8 {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04013.WXS.N.hg38 C3L-04013 LSCC WXS blood_normal CPT0233440002 0e3452f6-3bfd-46b5-b974-1b142a82845e_wxs_gdc_realn.bam 27940925237 BAM harmonized CPTAC3 79babf82-0500-4b82-b76d-81919961bc8f e42584cf3734f4e0e04e5d2360cb2998 {"aliquot_tag": "ALQ_949efcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04013.WXS.T C3L-04013 LSCC WXS tumor CPT0233320006 CPT0233320006.WholeExome.RP-1303.bam 22143908083 BAM submitted_aligned CPTAC3 2e9ebc9e-50db-4e1a-a9ae-cd743306d60b 67ef645f2bc83d84e33fa21b584bdb16 {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04013.WXS.T.hg38 C3L-04013 LSCC WXS tumor CPT0233320006 7f8bd24f-62f5-4fbc-8633-378805089c7c_wxs_gdc_realn.bam 30497169515 BAM harmonized CPTAC3 a0403770-4fad-409c-8955-81b27b2ddef2 1024de0595b202d43ca512a5c718f02d {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.MethArray.Green.A C3L-04014 LSCC Methylation_Array tissue_normal CPT0233640006 203219670019_R06C01_Grn.idat 13676232 IDAT Green NA CPTAC3 4ee44d51-80cd-4bca-80e4-a113b905e43d c386cc43ee6a055aed57f593df6a3d2f {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.MethArray.Green.T C3L-04014 LSCC Methylation_Array tumor CPT0233600006 203219650136_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 2c3eba83-d68d-47e0-bd2c-05d79b4dd495 fa777c3959d8c803d2791cf3a511d920 {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.MethArray.Red.A C3L-04014 LSCC Methylation_Array tissue_normal CPT0233640006 203219670019_R06C01_Red.idat 13676232 IDAT Red NA CPTAC3 4d67d427-e212-4651-bf78-7b12cc53fb8e cc0f3d3255c9ddb9e436d0019bb27d85 {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.MethArray.Red.T C3L-04014 LSCC Methylation_Array tumor CPT0233600006 203219650136_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 3fcf0e40-4c36-4d76-8cf7-fda97fe4db20 744aca7dd8959f8263ec43bd82ca89ae {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.miRNA-Seq.A.hg38 C3L-04014 LSCC miRNA-Seq tissue_normal CPT0233640009 c2fc02ba-8981-4a09-b7b7-6709ede9275d_mirnaseq_gdc_realn.bam 286128501 BAM harmonized CPTAC3 41ec720c-2397-4a72-9322-74a824710415 d72ed33da05a8e7edc8cfb349ce150dd {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.miRNA-Seq.S14_L005_R1.A C3L-04014 LSCC miRNA-Seq tissue_normal CPT0233640009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGGAAT_S14_L005_R1_001.unaln.bam 253446517 BAM S14_L005_R1 submitted_unaligned CPTAC3 3fbac0fd-7ee1-4d1b-9f88-bca6e399bd9c bac1a844d68da8bbadcaa4de2a005322 {"aliquot_tag": "ALQ_d353974c", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.miRNA-Seq.S26_L004_R1.T C3L-04014 LSCC miRNA-Seq tumor CPT0233600009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGTAGC_S26_L004_R1_001.unaln.bam 191214213 BAM S26_L004_R1 submitted_unaligned CPTAC3 a1aa9e6b-e87f-442c-84fc-4e8acbc6e2a2 e05f17ec9552313f27eea6686100342b {"aliquot_tag": "ALQ_26d3318c", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.miRNA-Seq.T.hg38 C3L-04014 LSCC miRNA-Seq tumor CPT0233600009 51f975d5-0c3e-4dc8-8ea4-169f658516cc_mirnaseq_gdc_realn.bam 219309349 BAM harmonized CPTAC3 f14d343d-0687-41e5-a28e-dff742cd88cf f1ce99711fa2c53031c9ea67b12ca54e {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.RNA-Seq.chimeric.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.chimeric.gdc_realn.bam 375248849 BAM chimeric harmonized CPTAC3 f41d73dd-f7a4-4086-bde6-863455a97143 6854a7fa3d2f35304aaf03cb9ee3c2f3 {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.RNA-Seq.chimeric.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.chimeric.gdc_realn.bam 244287261 BAM chimeric harmonized CPTAC3 a3562415-48f5-420d-a2fe-bd2cd2575981 1382fe571a192452b9184ea89e38664c {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.RNA-Seq.genomic.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.genomic.gdc_realn.bam 8848520670 BAM genomic harmonized CPTAC3 9e97a9e6-378f-4451-a774-67153c27ee82 713ef69245f954a8d9a2ca99c7c7cda7 {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.RNA-Seq.genomic.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.genomic.gdc_realn.bam 9522546421 BAM genomic harmonized CPTAC3 0fce155a-ec4e-4443-b325-ff4cd0d86849 7e0292c5a198978eaf082c31df87ded3 {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.RNA-Seq.S16_L004_R1.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 4286140076 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 304b43ab-ba52-45dc-8640-61acc3110fe0 96753b64ccff4b600585570c9dbf4cb2 {"aliquot_tag": "ALQ_26d3318c", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.RNA-Seq.S16_L004_R2.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 4754186991 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 12fa26b4-6d43-4558-b2e7-b76d9ae52077 f737a3de7254b52bb29c2b0a2a14eace {"aliquot_tag": "ALQ_26d3318c", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.RNA-Seq.S6_L008_R1.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R1_001.fastq.gz 4174954569 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 0797d2d1-7873-454b-b4e9-83c063d5bf62 859d92e14ae336bac2ed10add5d49353 {"aliquot_tag": "ALQ_d353974c", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.RNA-Seq.S6_L008_R2.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R2_001.fastq.gz 4668660054 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 8ebf4441-88d5-4f17-a826-d63e3c424296 baae4d855668b6bb9d29f90ac90b42f1 {"aliquot_tag": "ALQ_d353974c", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.RNA-Seq.transcriptome.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.transcriptome.gdc_realn.bam 9888377751 BAM transcriptome harmonized CPTAC3 12353aee-8bc6-4f37-803d-79182ca198a8 3614dac4710e2c33f024beb3c79d09a5 {"aliquot_tag": "ALQ_d353974c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.RNA-Seq.transcriptome.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.transcriptome.gdc_realn.bam 10852745697 BAM transcriptome harmonized CPTAC3 fcb9f455-f284-4645-ba63-8294cbe54634 beeab08a84ed1a560cc3ba556970cac2 {"aliquot_tag": "ALQ_26d3318c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.WGS.N C3L-04014 LSCC WGS blood_normal CPT0233750002 CPT0233750002.WholeGenome.RP-1303.bam 56691748843 BAM submitted_aligned CPTAC3 a54acbb2-6d87-4d73-b2db-185b2751b31f bd1aa8e0e6ecc6797ee3a6fbc51284c4 {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04014.WGS.N.hg38 C3L-04014 LSCC WGS blood_normal CPT0233750002 9eb60886-10fc-4637-8745-d721a4f514e5_wgs_gdc_realn.bam 82820611592 BAM harmonized CPTAC3 8cbda257-6835-4990-81de-e5ffa268a15f 0025ed297c02b9882eaead8f25eac0b4 {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04014.WGS.T C3L-04014 LSCC WGS tumor CPT0233600006 CPT0233600006.WholeGenome.RP-1303.bam 64429291994 BAM submitted_aligned CPTAC3 37428e63-fc98-48c0-a259-c3c9a0a79d82 943ed0d95b9db163f83c2d655539f098 {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.WGS.T.hg38 C3L-04014 LSCC WGS tumor CPT0233600006 295863ad-93e1-4be4-b13e-0bbd4ca64aff_wgs_gdc_realn.bam 94589190053 BAM harmonized CPTAC3 ab5e2db8-499b-456b-a9a7-7a926b1b48f1 1976404201489e466b2069d76faaffcc {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.WXS.A C3L-04014 LSCC WXS tissue_normal CPT0233640006 CPT0233640006.WholeExome.RP-1303.bam 26569444569 BAM submitted_aligned CPTAC3 21a7c9be-1c73-4c54-a677-3018427e0e98 1abebd4460766e5113df76476076e9e0 {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.WXS.A.hg38 C3L-04014 LSCC WXS tissue_normal CPT0233640006 bad3d5df-1ada-4f6e-8625-118a57736378_wxs_gdc_realn.bam 35950954081 BAM harmonized CPTAC3 6976aa76-4f75-41e8-b55c-6f49f314c0e8 b1f4faa66080f6b39e9954a4f66e710c {"aliquot_tag": "ALQ_43ec8add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04014.WXS.N C3L-04014 LSCC WXS blood_normal CPT0233750002 CPT0233750002.WholeExome.RP-1303.bam 40380021983 BAM submitted_aligned CPTAC3 fd78cda4-5d8a-4f73-b9c6-009509ce99a8 561cb59821ff5e24fe68f5f80ffce77f {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04014.WXS.N.hg38 C3L-04014 LSCC WXS blood_normal CPT0233750002 9eb60886-10fc-4637-8745-d721a4f514e5_wxs_gdc_realn.bam 56017714498 BAM harmonized CPTAC3 bcd0fdb2-0ee7-4cc8-88e1-483f364e627d f295e635b7195e73cf543d40e8ea345f {"aliquot_tag": "ALQ_b2bdb4d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04014.WXS.T C3L-04014 LSCC WXS tumor CPT0233600006 CPT0233600006.WholeExome.RP-1303.bam 28147753692 BAM submitted_aligned CPTAC3 5af8a4e2-f0cb-4f8d-aa98-b9e314d104c5 cf860b6f1350edd6322fb2b8d0e7d5a8 {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04014.WXS.T.hg38 C3L-04014 LSCC WXS tumor CPT0233600006 295863ad-93e1-4be4-b13e-0bbd4ca64aff_wxs_gdc_realn.bam 38121801668 BAM harmonized CPTAC3 71867537-620c-487a-b91b-0d0bcbd8c44c 462b6fe9b999f6fad66da6669d4141eb {"aliquot_tag": "ALQ_b66c2c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.MethArray.Green.A C3L-04025 HNSCC Methylation_Array tissue_normal CPT0256590007 203273200073_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f7920919-8a73-41d2-ad56-4c8596a51f7a 2f7dde89a540764cb3b7d2f3c199f96c {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.MethArray.Green.T C3L-04025 HNSCC Methylation_Array tumor CPT0256560006 203219650047_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a9cbf2a0-3573-496b-aa11-7eee9e06c57e 3c1fde7b01777b4b499b8b7147f49c2b {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.MethArray.Red.A C3L-04025 HNSCC Methylation_Array tissue_normal CPT0256590007 203273200073_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 d56315df-e8b6-409e-9b74-889e8343d65b 99b98774f4d506d68d243af66368aab4 {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.MethArray.Red.T C3L-04025 HNSCC Methylation_Array tumor CPT0256560006 203219650047_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 1b7a2298-19ef-4ebd-bc09-3e58ceee87f6 a55f4bd12b3dcf354119a6178a7df27e {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.miRNA-Seq.A.hg38 C3L-04025 HNSCC miRNA-Seq tissue_normal CPT0256590010 0d3e5686-f413-46df-a992-d86b970c65bd_mirnaseq_gdc_realn.bam 234789116 BAM harmonized CPTAC3 593a3a7d-15fb-4728-9bb5-d4dff14e7529 23d341e0423872a5d0149a5857f19b38 {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.miRNA-Seq.S3_L007_R1.T C3L-04025 HNSCC miRNA-Seq tumor CPT0256560009 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L007_R1_001.unaln.bam 226638163 BAM S3_L007_R1 submitted_unaligned CPTAC3 c7c26062-86da-4bc3-ac18-0d19778263ac 4ea882002da081a76f4052961bf7c76d {"aliquot_tag": "ALQ_bb5090a2", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.miRNA-Seq.S43_L004_R1.A C3L-04025 HNSCC miRNA-Seq tissue_normal CPT0256590010 190508_UNC31-K00269_0215_BH7FYKBBXY_TACAGC_S43_L004_R1_001.unaln.bam 205659168 BAM S43_L004_R1 submitted_unaligned CPTAC3 f3c549a4-004e-43b7-9b2e-1a6bf1983292 12715e38beaaa87c3aaf5fb8c7d88311 {"aliquot_tag": "ALQ_59c78e96", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.miRNA-Seq.T.hg38 C3L-04025 HNSCC miRNA-Seq tumor CPT0256560009 5ae5b933-19d4-475e-9d1e-ec3b66bc89b1_mirnaseq_gdc_realn.bam 252962371 BAM harmonized CPTAC3 438110b9-0fe5-44b0-b335-764f1eae3d80 3ccfd4a3dadc3fdea905420343fcbbf3 {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.RNA-Seq.chimeric.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.chimeric.gdc_realn.bam 27064308 BAM chimeric harmonized CPTAC3 f364a15a-9260-4a32-ba77-107cdcfcbd16 1bc80d0c364315b38b267d645ca3a8a9 {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.RNA-Seq.chimeric.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.chimeric.gdc_realn.bam 26164206 BAM chimeric harmonized CPTAC3 e965ab3f-277b-413e-b511-b04a1ca2af09 37d5d73caa3d3e94e329fc2b9355c9df {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.RNA-Seq.genomic.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.genomic.gdc_realn.bam 8328440818 BAM genomic harmonized CPTAC3 e7490ae1-3eee-465b-96b1-460bebbed516 0f441c1bb40078082335c350afe2353f {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.RNA-Seq.genomic.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.genomic.gdc_realn.bam 8095245184 BAM genomic harmonized CPTAC3 768b4f33-88f9-42c6-86b9-4cd763d18db6 c0158578b81626c63f4b581b324a77af {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.RNA-Seq.S17_L005_R1.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3972561332 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 bb6b636b-ee6d-4c83-af19-845acee3f666 373c80878c2286ae3be8ed80a427a20e {"aliquot_tag": "ALQ_59c78e96", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.RNA-Seq.S17_L005_R2.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 4402378041 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 881ceb87-9b07-4451-92b9-ff28e43c68b9 777903dfc6263ad3806d3b0e9959fa63 {"aliquot_tag": "ALQ_59c78e96", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.RNA-Seq.S44_L008_R1.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R1_001.fastq.gz 3772549655 FASTQ S44_L008_R1 submitted_unaligned CPTAC3 25c1e73d-131b-4d57-a892-e70b305f8760 dbfd61176e63b91adf10285727b12a0e {"aliquot_tag": "ALQ_bb5090a2", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.RNA-Seq.S44_L008_R2.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R2_001.fastq.gz 4192494749 FASTQ S44_L008_R2 submitted_unaligned CPTAC3 d48de247-9938-4802-9862-e1d81c261a25 ea8cd6bb86099c812eb46c67ac5c16fb {"aliquot_tag": "ALQ_bb5090a2", "sample": "S44", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.RNA-Seq.transcriptome.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.transcriptome.gdc_realn.bam 11396080353 BAM transcriptome harmonized CPTAC3 a51fa9b7-fbca-4874-bd85-1ac9b132d020 b07f7048655b7c71384ea26b958fcd35 {"aliquot_tag": "ALQ_59c78e96", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.RNA-Seq.transcriptome.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.transcriptome.gdc_realn.bam 10511722372 BAM transcriptome harmonized CPTAC3 248787e3-941f-4cf6-b0a9-cf9eb50740bd 3051696fc3b8f4d9c619aaddcfa8984b {"aliquot_tag": "ALQ_bb5090a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.WGS.N C3L-04025 HNSCC WGS blood_normal CPT0256700002 CPT0256700002.WholeGenome.RP-1303.bam 59644094369 BAM submitted_aligned CPTAC3 db5faf5d-1367-4692-ab57-8406c7a3b725 1997073a8a4ffc1168797013d2f9c51d {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04025.WGS.N.hg38 C3L-04025 HNSCC WGS blood_normal CPT0256700002 380bd699-e9e1-4b6e-ae17-2ab7d0daca42_wgs_gdc_realn.bam 87489177823 BAM harmonized CPTAC3 2f8f0f1c-af93-4c0d-9cf3-2f114ce56c95 13887ea569a1dd7f38f3cda3c558615a {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04025.WGS.T C3L-04025 HNSCC WGS tumor CPT0256560006 CPT0256560006.WholeGenome.RP-1303.bam 59018257175 BAM submitted_aligned CPTAC3 477b4890-870d-4e20-8795-92628c254d04 d366ef9ab2ef5d3ccb597553793899db {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.WGS.T.hg38 C3L-04025 HNSCC WGS tumor CPT0256560006 e1676c01-5acc-48b5-99c3-2077a6ed1505_wgs_gdc_realn.bam 86028509691 BAM harmonized CPTAC3 c74bf74c-599d-4db3-ace0-f15122c73c73 de957866ef72ed637bcf8643c6e6f606 {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.WXS.A C3L-04025 HNSCC WXS tissue_normal CPT0256590007 CPT0256590007.WholeExome.RP-1303.bam 22719781926 BAM submitted_aligned CPTAC3 7983d44a-9151-4cdb-83d3-54c14ec2dcf9 9ac3274d4cbd09361a2354a8a17f163d {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.WXS.A.hg38 C3L-04025 HNSCC WXS tissue_normal CPT0256590007 3684c772-b80e-403e-acf5-73d510799ae5_wxs_gdc_realn.bam 31469944263 BAM harmonized CPTAC3 633a75d4-8eaf-454d-aeb2-fe1e3bcc7257 79eb8e4eb0c84cd0da823ac2d7afc2fc {"aliquot_tag": "ALQ_deb82a74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04025.WXS.N C3L-04025 HNSCC WXS blood_normal CPT0256700002 CPT0256700002.WholeExome.RP-1303.bam 27349150213 BAM submitted_aligned CPTAC3 b786e4a1-bd35-405a-a8e9-0aefc5a4e5d8 d6f7285c991dc735a666937ca6bcc807 {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04025.WXS.N.hg38 C3L-04025 HNSCC WXS blood_normal CPT0256700002 380bd699-e9e1-4b6e-ae17-2ab7d0daca42_wxs_gdc_realn.bam 37101731716 BAM harmonized CPTAC3 34b61581-e961-468f-98de-0303f9b1735c 90003cfea251835ffe06822cf05e667c {"aliquot_tag": "ALQ_ee0a1d81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04025.WXS.T C3L-04025 HNSCC WXS tumor CPT0256560006 CPT0256560006.WholeExome.RP-1303.bam 46675296668 BAM submitted_aligned CPTAC3 2ccc94fd-3ec4-4e73-b086-f96b3b3a42fb 224fab1538adaa57f2f81a014911d5ba {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04025.WXS.T.hg38 C3L-04025 HNSCC WXS tumor CPT0256560006 e1676c01-5acc-48b5-99c3-2077a6ed1505_wxs_gdc_realn.bam 63791508054 BAM harmonized CPTAC3 c22b6956-05b7-4794-94df-1311876efe51 f5feecd5d00e530f3558f14aa81a5767 {"aliquot_tag": "ALQ_2bef8d33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.MethArray.Green.A C3L-04027 PDA Methylation_Array tissue_normal CPT0254740006 203561620085_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 574e5408-74fe-4ccf-a670-5c12b3755c4b 6f0e2a06ebb6ea1a048aee9d8edf01a5 {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.MethArray.Green.T C3L-04027 PDA Methylation_Array tumor CPT0254680006 203561450084_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 26a35e40-a51a-4fc2-893e-45fba4c8531e 0845d46da90f8f5785067cd1030ec65c {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.MethArray.Red.A C3L-04027 PDA Methylation_Array tissue_normal CPT0254740006 203561620085_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 fa99fc24-caf3-4270-b9bf-881fca009fd0 7f8bdfa8485837e6f40b009a5136ce8d {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.MethArray.Red.T C3L-04027 PDA Methylation_Array tumor CPT0254680006 203561450084_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 0fdede16-f67a-4f15-a119-3b3b700af3b2 a6a3d3440fb007ce339c2d07d3abf9df {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.miRNA-Seq.A.hg38 C3L-04027 PDA miRNA-Seq tissue_normal CPT0254740009 f941fff3-eaeb-4ee8-8d62-3d16975a5a5e_mirnaseq_gdc_realn.bam 287089959 BAM harmonized CPTAC3 f40f46f7-5cae-4c49-b937-93b8070acc2a 0158aed7ca26d13486b0a13fa1e26c61 {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.miRNA-Seq.S31_L002_R1.A C3L-04027 PDA miRNA-Seq tissue_normal CPT0254740009 190813_UNC32-K00270_0196_AH5MCWBBXY_CGATGT_S31_L002_R1_001.unaln.bam 254809804 BAM S31_L002_R1 submitted_unaligned CPTAC3 b0a3ce5f-1654-4506-bed2-57146c0d8d04 543a5f93f9a1a5245e54c23481baccd8 {"aliquot_tag": "ALQ_1bc773e0", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.miRNA-Seq.S33_L005_R1.T C3L-04027 PDA miRNA-Seq tumor CPT0254680009 190712_UNC32-K00270_0192_BH7HL3BBXY_TAGCTT_S33_L005_R1_001.unaln.bam 202327616 BAM S33_L005_R1 submitted_unaligned CPTAC3 1de0ed0c-a5f0-4d30-af89-44ad81e6a39c e01a5ad7b99d8629a4150bcdc0b001d2 {"aliquot_tag": "ALQ_156b4d44", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.miRNA-Seq.T.hg38 C3L-04027 PDA miRNA-Seq tumor CPT0254680009 8fa468ba-6f68-4a3b-8353-6ad7586e5bf0_mirnaseq_gdc_realn.bam 222875950 BAM harmonized CPTAC3 38751ca1-10c7-406e-9a12-355dc163b2e1 b89c1b7450f2179945187d1ac1f2f5ae {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.RNA-Seq.chimeric.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.chimeric.gdc_realn.bam 43892609 BAM chimeric harmonized CPTAC3 7671e162-39ee-4707-b0ba-d7f2e6245cb2 b824b316f8053939fc794e665cb40e38 {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.RNA-Seq.chimeric.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.chimeric.gdc_realn.bam 38474471 BAM chimeric harmonized CPTAC3 0172c6cc-641f-4a73-bc09-abc7cf91ee76 9339605ee106642ae9c9251b17d701bb {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.RNA-Seq.genomic.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.genomic.gdc_realn.bam 8411419719 BAM genomic harmonized CPTAC3 1a68c238-82cb-4860-9dde-1119a76922a8 5e0671c6711c91976acdd3fc433d8715 {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.RNA-Seq.genomic.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.genomic.gdc_realn.bam 8800388359 BAM genomic harmonized CPTAC3 0851babd-6826-4626-870c-26881d32880c c0e8f22a34d175ea132b35cbb01802a2 {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.RNA-Seq.S11_L003_R1.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R1_001.fastq.gz 4026607218 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 33ca49b1-e9ed-4c95-9aeb-bc7aa415b6ef c0d2f0c4bdabb21e4b2914e14f80990a {"aliquot_tag": "ALQ_1bc773e0", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.RNA-Seq.S11_L003_R2.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R2_001.fastq.gz 4271815397 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 e779fe94-29bb-40df-bb13-76a013fd2c53 7ea67e9627dd5d293e2f74ee74c9fef5 {"aliquot_tag": "ALQ_1bc773e0", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.RNA-Seq.S31_L008_R1.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R1_001.fastq.gz 4004986865 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 159e4176-9a7c-44ed-b584-27f8aa02d5ec 174807932287aaa61f06d52ef9f0ed27 {"aliquot_tag": "ALQ_156b4d44", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.RNA-Seq.S31_L008_R2.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R2_001.fastq.gz 4614043434 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 fc869480-fca0-4941-919c-2b34633ddda7 09aeb033dcd78a2a84d258026a2f9905 {"aliquot_tag": "ALQ_156b4d44", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.RNA-Seq.transcriptome.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.transcriptome.gdc_realn.bam 9252879958 BAM transcriptome harmonized CPTAC3 c3e8efe6-0113-4441-9394-e9057a6e1116 4b936f7c19f5297d4e7d7dbea03eecaa {"aliquot_tag": "ALQ_1bc773e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.RNA-Seq.transcriptome.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.transcriptome.gdc_realn.bam 11795834463 BAM transcriptome harmonized CPTAC3 ca7a4127-6c09-4991-966b-1ac192ec00c8 75c18ce16975a1a222f1641f979fc96d {"aliquot_tag": "ALQ_156b4d44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.Targeted.T C3L-04027 PDA Targeted_Sequencing tumor CPT0254680006 CPT0254680006.CustomSelection.RP-1303.PDO-18786.bam 6138985544 BAM submitted_aligned CPTAC3 1618bc31-7741-441b-ba00-6ae12dc8b0f4 00675eb4c7ce3826951f121faba36bdf {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.Targeted.T.hg38 C3L-04027 PDA Targeted_Sequencing tumor CPT0254680006 15c31aed-f331-407a-b9c9-6f7b71981967_targetedsequencing_gdc_realn.bam 8589310587 BAM harmonized CPTAC3 63747717-f4cd-4f46-bfc8-c669ed438324 0538abc39f0631a4b0e6bf5e8eb7275e {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.WGS.N C3L-04027 PDA WGS blood_normal CPT0254840002 CPT0254840002.WholeGenome.RP-1303.bam 85992466645 BAM submitted_aligned CPTAC3 33bdccaa-73f9-49cf-a276-908bc90e1969 9007c984eb98906b849b9da23e176c94 {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04027.WGS.N.hg38 C3L-04027 PDA WGS blood_normal CPT0254840002 e8b9f528-1288-40e6-8173-c2ed274135ab_wgs_gdc_realn.bam 125611981159 BAM harmonized CPTAC3 907f0b35-1883-4339-852b-48d317763b9c 7179b9c645175634ad401566cc2ec2cc {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04027.WGS.T C3L-04027 PDA WGS tumor CPT0254680006 CPT0254680006.WholeGenome.RP-1303.bam 74530529866 BAM submitted_aligned CPTAC3 5a8be679-058b-4650-94c4-62470766115a 6ab498f93d1e433c3dd26519e938052f {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.WGS.T.hg38 C3L-04027 PDA WGS tumor CPT0254680006 15c31aed-f331-407a-b9c9-6f7b71981967_wgs_gdc_realn.bam 108929217423 BAM harmonized CPTAC3 54e73d68-5160-4cbc-98ed-88c18bcc1693 f4aef4ce33ebd61a973579a05b430b09 {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.WXS.A C3L-04027 PDA WXS tissue_normal CPT0254740006 CPT0254740006.WholeExome.RP-1303.bam 21316699207 BAM submitted_aligned CPTAC3 e9b283fc-e84d-484f-a3cd-40df138e6758 517c0a87ec9aeadea5d3e12a60c889d0 {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.WXS.A.hg38 C3L-04027 PDA WXS tissue_normal CPT0254740006 f0973e45-389e-48c2-b579-fb9a8a8b956b_wxs_gdc_realn.bam 29237915602 BAM harmonized CPTAC3 85b68dd4-92c9-4207-98c3-cc50ed763654 908e9c771089d2ded3dfb1585bf093a9 {"aliquot_tag": "ALQ_8b786e71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04027.WXS.N C3L-04027 PDA WXS blood_normal CPT0254840002 CPT0254840002.WholeExome.RP-1303.bam 28723383729 BAM submitted_aligned CPTAC3 c983c4a1-a9cd-46e2-aef0-7f18d3f9c3ad de9b701a6d8e28e7e4f3f0631482fb10 {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04027.WXS.N.hg38 C3L-04027 PDA WXS blood_normal CPT0254840002 e8b9f528-1288-40e6-8173-c2ed274135ab_wxs_gdc_realn.bam 39582805913 BAM harmonized CPTAC3 8f3b10aa-b7e2-4644-a404-d794bfa5df85 a4fc131d8e7fd835570ccb30bc0fbb26 {"aliquot_tag": "ALQ_7d4318bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04027.WXS.T C3L-04027 PDA WXS tumor CPT0254680006 CPT0254680006.WholeExome.RP-1303.bam 53620183971 BAM submitted_aligned CPTAC3 5516f2ce-56b6-48fb-94b9-6b4405d79641 5f093d075c30f9dd377c28e13213458f {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04027.WXS.T.hg38 C3L-04027 PDA WXS tumor CPT0254680006 15c31aed-f331-407a-b9c9-6f7b71981967_wxs_gdc_realn.bam 73422793671 BAM harmonized CPTAC3 c81b0225-b444-4e83-b10b-deab390d82d9 6ebdcf2c151f5ae76c6ff0119ef5dfb0 {"aliquot_tag": "ALQ_85d450d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.MethArray.Green.A C3L-04031 LUAD Methylation_Array tissue_normal CPT0231570006 203561620040_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 808ccbaf-2e80-4761-9120-a04ebe13dbd0 f27798609c6b058ae2ff1bfdc0e65660 {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.MethArray.Green.T C3L-04031 LUAD Methylation_Array tumor CPT0231560006 203561620077_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6a4a7cb4-5e17-429c-b086-6f7f31a25776 20a64bbac1d875b76eab6a846155f3b6 {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.MethArray.Red.A C3L-04031 LUAD Methylation_Array tissue_normal CPT0231570006 203561620040_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 a3e7711e-f5ad-4407-94a7-54eb8d26eb54 bc05664db47ab87e5147581f4780af1f {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.MethArray.Red.T C3L-04031 LUAD Methylation_Array tumor CPT0231560006 203561620077_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 5207521a-02c8-4f04-9f19-39a34421ff9e c69e6e47601934d40334de0359ddc10f {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.miRNA-Seq.A.hg38 C3L-04031 LUAD miRNA-Seq tissue_normal CPT0231570009 e5595e5e-cba5-43d2-b94c-a55116af1be5_mirnaseq_gdc_realn.bam 188722329 BAM harmonized CPTAC3 6fd0c3c1-1429-4b94-8137-6dc80fb66420 81ead90b7d3acba02fca30599ce40306 {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.miRNA-Seq.S44_L005_R1.A C3L-04031 LUAD miRNA-Seq tissue_normal CPT0231570009 190722_UNC31-K00269_0234_AH7VGTBBXY_TGACCA_S44_L005_R1_001.unaln.bam 167606446 BAM S44_L005_R1 submitted_unaligned CPTAC3 fbd76841-776c-4d08-a412-2abb6d7792d7 dad2767003299d7c3619a0ff8ac29b37 {"aliquot_tag": "ALQ_85f88e1b", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.miRNA-Seq.S47_L004_R1.T C3L-04031 LUAD miRNA-Seq tumor CPT0231560009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTAGCT_S47_L004_R1_001.unaln.bam 254790091 BAM S47_L004_R1 submitted_unaligned CPTAC3 d79fd4e1-0ced-4969-b340-3aca62523081 eb2df97c7928d67bade9d289df59cc0b {"aliquot_tag": "ALQ_b898a7ab", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.miRNA-Seq.T.hg38 C3L-04031 LUAD miRNA-Seq tumor CPT0231560009 e5436ff8-2f6c-4793-89a8-635e0b890f9a_mirnaseq_gdc_realn.bam 278810527 BAM harmonized CPTAC3 962c8f8e-3f6f-4197-b19a-f7b0c774df11 9fae290555e756c04917fcea44fe88ac {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.RNA-Seq.chimeric.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.chimeric.gdc_realn.bam 32389701 BAM chimeric harmonized CPTAC3 d32ec039-4598-4052-96fd-9ab145c31d79 7ab35444e579d6e6609107ce78f748cb {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.RNA-Seq.chimeric.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.chimeric.gdc_realn.bam 38582937 BAM chimeric harmonized CPTAC3 2ed3fd49-05b0-4b5d-a873-cf4e02733138 3dcecdb779c816fc98f3f5d2a41aef7a {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.RNA-Seq.genomic.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.genomic.gdc_realn.bam 12296855433 BAM genomic harmonized CPTAC3 7a1e9d59-ad78-4abf-bae0-3632dc194b1a 5af26076ca72124071c1e0d35fda0898 {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.RNA-Seq.genomic.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.genomic.gdc_realn.bam 10626828053 BAM genomic harmonized CPTAC3 b707cdea-b93f-41d9-885a-4ae3b4a0db17 86093bf64936f2ebe7548ba802cbe9b8 {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.RNA-Seq.S18_L005_R1.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3896751344 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 67545b35-6742-4f5c-9ef2-2ec80f0d27bd e74a0249068045e0873a14a1528a085f {"aliquot_tag": "ALQ_b898a7ab", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.RNA-Seq.S18_L005_R2.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 4489910121 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 f71f9ac2-aa7f-445c-93b5-fb2b4f45fc8a 1016680bd06c29057bbd8ee2f04c605c {"aliquot_tag": "ALQ_b898a7ab", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.RNA-Seq.S24_L006_R1.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R1_001.fastq.gz 3943143348 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 4badec9a-98c7-43fc-8dfa-828927ffa92e 2706548f013b47186678f9c90c7d6906 {"aliquot_tag": "ALQ_85f88e1b", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.RNA-Seq.S24_L006_R2.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R2_001.fastq.gz 4308999867 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 4a2fa41f-d043-4dcc-b5a9-2ba1ad1ca9f5 a2125019bce29818b1c83a72d0a77bc1 {"aliquot_tag": "ALQ_85f88e1b", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.RNA-Seq.transcriptome.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.transcriptome.gdc_realn.bam 7661656193 BAM transcriptome harmonized CPTAC3 8edd6aed-4f17-4008-afee-4e17cd42d060 7b61a886125d1a22a581c1f972d8233e {"aliquot_tag": "ALQ_85f88e1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.RNA-Seq.transcriptome.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.transcriptome.gdc_realn.bam 9271311573 BAM transcriptome harmonized CPTAC3 6b41749c-93e3-4fa5-92ab-14c168198539 fd1ee9529ddcf084597dd8ca1922779d {"aliquot_tag": "ALQ_b898a7ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.WGS.N C3L-04031 LUAD WGS blood_normal CPT0231680002 CPT0231680002.WholeGenome.RP-1303.bam 54040017237 BAM submitted_aligned CPTAC3 8d0a290c-e3a9-4746-b947-d3be5c8870ef aea202502c21227aea70abbb13a242c2 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04031.WGS.N.hg38 C3L-04031 LUAD WGS blood_normal CPT0231680002 24f3d373-0410-47e5-aa5f-bcbf375f4c9d_wgs_gdc_realn.bam 78339955639 BAM harmonized CPTAC3 213efcaf-8209-49ae-a5d3-66951067b715 2b4493ab1b8448146692fc309f1b47d6 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04031.WGS.T C3L-04031 LUAD WGS tumor CPT0231560006 CPT0231560006.WholeGenome.RP-1303.bam 58069692834 BAM submitted_aligned CPTAC3 dac23237-a218-44b7-8466-00d06e2ec8b0 134187f28dbc7133464d8845b38ad61d {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.WGS.T.hg38 C3L-04031 LUAD WGS tumor CPT0231560006 dc4958b7-9590-4c7a-82b6-1498b49cdc91_wgs_gdc_realn.bam 85558042697 BAM harmonized CPTAC3 a3f7dddf-74ac-484c-952c-c9eb04761f55 2feb97852e14bb87d6e61d61e9827bb3 {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.WXS.A C3L-04031 LUAD WXS tissue_normal CPT0231570006 CPT0231570006.WholeExome.RP-1303.bam 19239991472 BAM submitted_aligned CPTAC3 691f578c-546d-40a0-9246-a886fb975831 842a58483d40748ff5653dfe47f15743 {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.WXS.A.hg38 C3L-04031 LUAD WXS tissue_normal CPT0231570006 4c5e15c2-2065-40bd-83ac-3277ed122be5_wxs_gdc_realn.bam 26678694587 BAM harmonized CPTAC3 cb6294f7-d57f-48ea-aec5-881310d5eb60 f752e39e982aaba2345e20ce59f33d47 {"aliquot_tag": "ALQ_1547938a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04031.WXS.N C3L-04031 LUAD WXS blood_normal CPT0231680002 CPT0231680002.WholeExome.RP-1303.bam 31186056053 BAM submitted_aligned CPTAC3 a2fad5e4-79c6-4502-9faa-62a3ecef1147 e38ff77d9be31bd46a21cbd695dde6f0 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04031.WXS.N.hg38 C3L-04031 LUAD WXS blood_normal CPT0231680002 24f3d373-0410-47e5-aa5f-bcbf375f4c9d_wxs_gdc_realn.bam 42972708622 BAM harmonized CPTAC3 d052c89e-3678-4cfd-b6f9-a24b02981807 510de61a76d945116acb7a871fd51741 {"aliquot_tag": "ALQ_16eeb2ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04031.WXS.T C3L-04031 LUAD WXS tumor CPT0231560006 CPT0231560006.WholeExome.RP-1303.bam 25469289541 BAM submitted_aligned CPTAC3 6685835c-e93a-481b-995e-8a7405f2c22b b12f82725e5e3c38b236b99d2955027c {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04031.WXS.T.hg38 C3L-04031 LUAD WXS tumor CPT0231560006 dc4958b7-9590-4c7a-82b6-1498b49cdc91_wxs_gdc_realn.bam 35545908335 BAM harmonized CPTAC3 30381c04-de06-4c6a-9a59-c2842eb6a467 f0ea5a00254c622ae166c291854eac72 {"aliquot_tag": "ALQ_2827ba3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.MethArray.Green.A C3L-04033 LUAD Methylation_Array tissue_normal CPT0231410006 203561450023_R02C01_Grn.idat 13676223 IDAT Green NA CPTAC3 c0a71ada-3c56-481c-b78b-467a3022b58b dbd933db61cc58559cefa65631f8b5a5 {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.MethArray.Green.T C3L-04033 LUAD Methylation_Array tumor CPT0231350007 203561620085_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 244bdd5a-7076-44d7-a9b6-e5817ee4d901 d56cc12847c9b9aa1d4180ed76fb5fa2 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.MethArray.Red.A C3L-04033 LUAD Methylation_Array tissue_normal CPT0231410006 203561450023_R02C01_Red.idat 13676223 IDAT Red NA CPTAC3 7babbddb-b98c-4b20-9f50-45d7c14157dc 787a6b003931f954f7d3c55915a236f3 {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.MethArray.Red.T C3L-04033 LUAD Methylation_Array tumor CPT0231350007 203561620085_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 c7153ed4-6a97-46d9-8f70-bdda1aac6ccd d947b44baaaf95f56934f5a32934f47b {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.miRNA-Seq.A.hg38 C3L-04033 LUAD miRNA-Seq tissue_normal CPT0231410009 518fe22c-b2ec-4587-858b-71ef7698fb53_mirnaseq_gdc_realn.bam 204225693 BAM harmonized CPTAC3 c02b1b7d-6c21-41a3-acaf-1d93aef81ed3 7f871770c8c4dd7044fd42cbade01096 {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.miRNA-Seq.S31_L004_R1.T C3L-04033 LUAD miRNA-Seq tumor CPT0231350010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGGAAT_S31_L004_R1_001.unaln.bam 325214854 BAM S31_L004_R1 submitted_unaligned CPTAC3 699ccaf0-c37d-40ed-b04e-ecf1b9139059 59b817e958171c59a71c7214b3226b71 {"aliquot_tag": "ALQ_49a6b783", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.miRNA-Seq.S43_L005_R1.A C3L-04033 LUAD miRNA-Seq tissue_normal CPT0231410009 190722_UNC31-K00269_0234_AH7VGTBBXY_TTAGGC_S43_L005_R1_001.unaln.bam 178042423 BAM S43_L005_R1 submitted_unaligned CPTAC3 431ca8e3-3b43-448f-99c8-5dbf1baa0fae 424f721463e35a100dcddb7906186cf8 {"aliquot_tag": "ALQ_c1e4a81e", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.miRNA-Seq.T.hg38 C3L-04033 LUAD miRNA-Seq tumor CPT0231350010 93079195-edf4-4cee-89f2-d79f0d37885c_mirnaseq_gdc_realn.bam 356066021 BAM harmonized CPTAC3 9b40edc8-082f-41cd-b724-a1e5a718887d 5aa5d9e40fafc87b13f659bedc1e8d3e {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.RNA-Seq.chimeric.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.chimeric.gdc_realn.bam 35038477 BAM chimeric harmonized CPTAC3 703f86c2-0877-42a8-accf-3c21440e2019 170b5dcd1e43e5d16779c51ad1941a0c {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.RNA-Seq.chimeric.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.chimeric.gdc_realn.bam 44740598 BAM chimeric harmonized CPTAC3 2f74eb92-9129-4371-96be-186fafe93bcc fbf14c82a3d94cc463d57ed5a8c3248b {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.RNA-Seq.genomic.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.genomic.gdc_realn.bam 9516878293 BAM genomic harmonized CPTAC3 86edb82c-bbe3-406b-8832-2a059b876e83 db5b5cf51b0d5b76d6150c551741b931 {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.RNA-Seq.genomic.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.genomic.gdc_realn.bam 12431704962 BAM genomic harmonized CPTAC3 d38664b0-a95a-4dba-b098-a68d364b8208 94d6ab0223bd014a2a3bbef18fb9d7ac {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.RNA-Seq.S19_L005_R1.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R1_001.fastq.gz 4616701026 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 20b3406b-826a-46d1-a8e6-55e7c9431014 000f7905d6a7b230d2698fc83b77d1c1 {"aliquot_tag": "ALQ_49a6b783", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.RNA-Seq.S19_L005_R2.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R2_001.fastq.gz 5366115132 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 a865155a-4759-416f-a3d1-366b0397caf2 b37b3dc19da0ff70f49b105f93c91b4b {"aliquot_tag": "ALQ_49a6b783", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.RNA-Seq.S21_L006_R1.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R1_001.fastq.gz 3579229932 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 6f380e61-6b00-4376-87c6-6813ecbe4e78 8eee1e451d0e80513de24722e21427a2 {"aliquot_tag": "ALQ_c1e4a81e", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.RNA-Seq.S21_L006_R2.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R2_001.fastq.gz 3981553315 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 e8886846-49e3-430a-bcd5-7f40e1cc1523 89351b8f682a9d1850cb1290bea181b6 {"aliquot_tag": "ALQ_c1e4a81e", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.RNA-Seq.transcriptome.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.transcriptome.gdc_realn.bam 7284989532 BAM transcriptome harmonized CPTAC3 96191992-1190-4fbb-b6a3-64400d4a537b e6dd35a73311c50d8eb385021e1efba2 {"aliquot_tag": "ALQ_c1e4a81e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.RNA-Seq.transcriptome.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.transcriptome.gdc_realn.bam 10813366621 BAM transcriptome harmonized CPTAC3 2063299b-df72-4322-9710-6c947809f9c1 a735d1e801a4ebc03d276834a127e687 {"aliquot_tag": "ALQ_49a6b783", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.WGS.N C3L-04033 LUAD WGS blood_normal CPT0231510002 CPT0231510002.WholeGenome.RP-1303.bam 74862218332 BAM submitted_aligned CPTAC3 907076ab-2aca-49bf-8284-32fe5f5f4c69 4d33c4cd54c344e01cc3b7c2acd7eb7d {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04033.WGS.N.hg38 C3L-04033 LUAD WGS blood_normal CPT0231510002 dafd7df7-0e5d-4241-bf8c-c487a3c6f039_wgs_gdc_realn.bam 110484584784 BAM harmonized CPTAC3 d518c8a1-808a-4417-b48b-154524b0e81d 6c3ee2c74f2324fb60a345271868c351 {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04033.WGS.T C3L-04033 LUAD WGS tumor CPT0231350007 CPT0231350007.WholeGenome.RP-1303.bam 63746393683 BAM submitted_aligned CPTAC3 9c5711ec-7fd1-466d-9be7-001e6bd51567 b1e5a41254b025a1c21393f6aa5f5e81 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.WGS.T.hg38 C3L-04033 LUAD WGS tumor CPT0231350007 00faa3b4-b35a-4c70-97c9-702f7ae63b7c_wgs_gdc_realn.bam 93301765074 BAM harmonized CPTAC3 a9a5abaa-9e41-4b32-ad7c-8b587b7b76d5 0f0212fad0f1a029ff4a427948dcc02b {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.WXS.A C3L-04033 LUAD WXS tissue_normal CPT0231410006 CPT0231410006.WholeExome.RP-1303.bam 19539380157 BAM submitted_aligned CPTAC3 ea4273df-d908-46db-8f17-31ea80b9cb97 7de619093d0d93748e6d8ea1fd3c0e42 {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.WXS.A.hg38 C3L-04033 LUAD WXS tissue_normal CPT0231410006 3f1b2b9f-75b5-4da2-8d16-e664af5d5897_wxs_gdc_realn.bam 27080277143 BAM harmonized CPTAC3 68b7c2a4-b1af-409b-b656-df5565fe8880 aa7e43c17016da229b809dd6816a490f {"aliquot_tag": "ALQ_515bb58f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04033.WXS.N C3L-04033 LUAD WXS blood_normal CPT0231510002 CPT0231510002.WholeExome.RP-1303.bam 27695366421 BAM submitted_aligned CPTAC3 453dc29b-7b7f-4cd9-8869-deb49019bcb9 92d0b868d983b6ba3fbc4ff1e531629b {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04033.WXS.N.hg38 C3L-04033 LUAD WXS blood_normal CPT0231510002 dafd7df7-0e5d-4241-bf8c-c487a3c6f039_wxs_gdc_realn.bam 38260891142 BAM harmonized CPTAC3 ebc08f52-ea73-4d4d-a6b5-5ad7099aa91c 43141c4673fefb1e88e7feb44d2ffd78 {"aliquot_tag": "ALQ_9d6aa233", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04033.WXS.T C3L-04033 LUAD WXS tumor CPT0231350007 CPT0231350007.WholeExome.RP-1303.bam 23825046229 BAM submitted_aligned CPTAC3 1d1aab1a-514c-4526-b34a-339f4eab3e91 f749d3182efb8e3309e0aa600ff567b7 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04033.WXS.T.hg38 C3L-04033 LUAD WXS tumor CPT0231350007 00faa3b4-b35a-4c70-97c9-702f7ae63b7c_wxs_gdc_realn.bam 33474358831 BAM harmonized CPTAC3 a32e9ffa-afdf-4a6e-aa3c-f553b04b48d9 41d593aa524b044e9fe721979f6ddab8 {"aliquot_tag": "ALQ_ced91361", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04036.MethArray.Green.T C3L-04036 GBM Methylation_Array tumor CPT0228100006 204367490056_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 adb639af-6803-4a7a-961f-ac41a342bbc2 573de43df98665329303a89633da0cc8 {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.MethArray.Red.T C3L-04036 GBM Methylation_Array tumor CPT0228100006 204367490056_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 fc1c77e5-7703-4100-b663-c11561492241 351825c81bee656f396fffdceb28ceed {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.miRNA-Seq.S23_L001_R1.T C3L-04036 GBM miRNA-Seq tumor CPT0228100013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 231628336 BAM S23_L001_R1 submitted_unaligned CPTAC3 0cb1fa8c-049f-4fb9-a6b0-14caf66a4c89 7b4c3cf3366bb40a18a2c73e28377009 {"aliquot_tag": "ALQ_cb58d0f", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.miRNA-Seq.T.hg38 C3L-04036 GBM miRNA-Seq tumor CPT0228100013 4a878582-42a5-4ea9-aa7f-92e81a823fb5_mirnaseq_gdc_realn.bam 261066376 BAM harmonized CPTAC3 9fe7adc5-5c84-4e2a-b9c8-c71e924a05d5 ec212574e36605b4c363dbc0c4273913 {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.RNA-Seq.chimeric.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.chimeric.gdc_realn.bam 31121772 BAM chimeric harmonized CPTAC3 669eb8b1-6af8-4691-b172-e0e764844311 b768a97ae115e1d166b5a1b599079ede {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.RNA-Seq.genomic.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.genomic.gdc_realn.bam 8947107855 BAM genomic harmonized CPTAC3 13eff63b-b954-4bfe-b6eb-86989912ea35 714e45c49fbe9ea43150eea542000cae {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.RNA-Seq.S18_L005_R1.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R1_001.fastq.gz 4300016107 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 4ad5e390-ef2e-4370-a0fa-de8d0c112f8b 2e4c2075b60020d26b10507eaa4e17f4 {"aliquot_tag": "ALQ_cb58d0f", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.RNA-Seq.S18_L005_R2.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 180a4380-addf-4a1a-98bd-e75a7b5982da bfe895f8895e2dda867559468bd276a4 {"aliquot_tag": "ALQ_cb58d0f", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.RNA-Seq.transcriptome.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.transcriptome.gdc_realn.bam 11357149863 BAM transcriptome harmonized CPTAC3 4011bdd2-cf0a-4255-83f3-e77b6a9ac24f 84c15f8f39281aed035d86aab8463c58 {"aliquot_tag": "ALQ_cb58d0f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.WGS.N C3L-04036 GBM WGS blood_normal CPT0228200002 CPT0228200002.WholeGenome.RP-2158.bam 27954573868 BAM submitted_aligned CPTAC3 4614d7be-dcff-4e9a-b51a-2a14ca2a0707 43d0a8587a3e8c3f8f943083729c2304 {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04036.WGS.N.hg38 C3L-04036 GBM WGS blood_normal CPT0228200002 d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wgs_gdc_realn.bam 84600612482 BAM harmonized CPTAC3 5cc05bff-59ba-46d5-a94b-f2ce494057d0 c7043a90936f5152ce75c5999e5eed82 {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04036.WGS.T C3L-04036 GBM WGS tumor CPT0228100006 CPT0228100006.WholeGenome.RP-2158.bam 26788664741 BAM submitted_aligned CPTAC3 ea0a6535-4d05-4a3f-b835-1431971ebd4d d3e14718e545057ae4380f06ccb1d4da {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.WGS.T.hg38 C3L-04036 GBM WGS tumor CPT0228100006 cf7c8668-776a-401c-8507-aeb41e890b44_wgs_gdc_realn.bam 78770530553 BAM harmonized CPTAC3 38dbe442-1dc6-4904-a03f-2d4d7fd6a845 4d2d3cb33789d093c427cda3cfa84cd7 {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.WXS.N C3L-04036 GBM WXS blood_normal CPT0228200002 CPT0228200002.WholeExome.RP-1303.bam 24314988168 BAM submitted_aligned CPTAC3 ceb21f60-93ac-4f7e-a303-770b73fbc591 2b4cebe63a93f43713f10792ae618c8b {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04036.WXS.N.hg38 C3L-04036 GBM WXS blood_normal CPT0228200002 d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wxs_gdc_realn.bam 32993694360 BAM harmonized CPTAC3 af95917f-66d4-4f45-a029-744682ad5cfd 1d92fbcac71cbc1c80d2259ca7e9a5d2 {"aliquot_tag": "ALQ_e43dfe76", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04036.WXS.T C3L-04036 GBM WXS tumor CPT0228100006 CPT0228100006.WholeExome.RP-1303.bam 22411527930 BAM submitted_aligned CPTAC3 e451386b-5d46-4f36-ab71-9e929e867659 77b0a1392dcb36bbda35c4a2c5ccd078 {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04036.WXS.T.hg38 C3L-04036 GBM WXS tumor CPT0228100006 cf7c8668-776a-401c-8507-aeb41e890b44_wxs_gdc_realn.bam 31650565850 BAM harmonized CPTAC3 494a854e-4132-41ed-a5a9-4ccdeda2fb59 b07a7648a7f8cdacd45296b5dc97186c {"aliquot_tag": "ALQ_65c448c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04037.MethArray.Green.T C3L-04037 LUAD Methylation_Array tumor CPT0229540007 203561450114_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dadbd758-9fb5-4aca-84cb-9d77c673053e 4531b3eabcdb9649de1b4556e155a247 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.MethArray.Red.T C3L-04037 LUAD Methylation_Array tumor CPT0229540007 203561450114_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 29789a48-78fb-4141-9f50-3060d5a92256 5df92df2bac1f888ec93f8d096a60047 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.miRNA-Seq.A.hg38 C3L-04037 LUAD miRNA-Seq tissue_normal CPT0229570006 226aab75-5af5-4c0f-a81b-633e3f5afca4_mirnaseq_gdc_realn.bam 202031039 BAM harmonized CPTAC3 94660b34-5aca-489d-9f4a-2973c0f489b7 ceb002f26b85381c41a176198f3d09f8 {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04037.miRNA-Seq.S18_L007_R1.A C3L-04037 LUAD miRNA-Seq tissue_normal CPT0229570006 190722_UNC31-K00269_0234_AH7VGTBBXY_CGTACG_S18_L007_R1_001.unaln.bam 180452836 BAM S18_L007_R1 submitted_unaligned CPTAC3 ea2d884b-fc85-4da5-92e1-16bcf2ef3bd4 87d397bcfba3869093d6940477002cc7 {"aliquot_tag": "ALQ_ea02dd73", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04037.miRNA-Seq.S30_L004_R1.T C3L-04037 LUAD miRNA-Seq tumor CPT0229540010 190722_UNC31-K00269_0234_AH7VGTBBXY_CCAACA_S30_L004_R1_001.unaln.bam 182160196 BAM S30_L004_R1 submitted_unaligned CPTAC3 40f958ec-ca43-439c-a0a2-7b67b6b9015b 42e9c73e63399f9bbceb392b6cebdd35 {"aliquot_tag": "ALQ_5dda33d7", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.miRNA-Seq.T.hg38 C3L-04037 LUAD miRNA-Seq tumor CPT0229540010 557feab8-8acc-4503-9739-f58117e798f2_mirnaseq_gdc_realn.bam 201032117 BAM harmonized CPTAC3 58cf4c63-c2b1-4fd3-a67f-9530f6d3f754 7feabba4077d9ec29c71ecf317a0ffbe {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.RNA-Seq.chimeric.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.chimeric.gdc_realn.bam 21962025 BAM chimeric harmonized CPTAC3 56a05fd4-9b5f-4a7b-ae17-e7c1739ddfeb 9f228a83c2ea39a185a1a5b73ad2b8bc {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04037.RNA-Seq.chimeric.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.chimeric.gdc_realn.bam 37194066 BAM chimeric harmonized CPTAC3 3bff7fb1-3f4a-4778-89e6-7f0046322bf5 6bb3336927c7cddda3aaa7d3b1237409 {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.RNA-Seq.genomic.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.genomic.gdc_realn.bam 10055068882 BAM genomic harmonized CPTAC3 c481531e-8501-4116-9841-81192d5c47c2 d0a5e4bcac00397002b40b9241ff1328 {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04037.RNA-Seq.genomic.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.genomic.gdc_realn.bam 13331768144 BAM genomic harmonized CPTAC3 09415abc-854f-42cf-b367-5d9cce12f97f 96fa6a585d8b2c3b39f999d4a8c5d905 {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.RNA-Seq.S24_L006_R1.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R1_001.fastq.gz 4443614863 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 20ce4060-9f88-4c4a-8cd6-1686f5924208 0162ce9d13d37f37514dafee2190deb2 {"aliquot_tag": "ALQ_5dda33d7", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.RNA-Seq.S24_L006_R2.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R2_001.fastq.gz 4973554677 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 1cdf4feb-6bae-499f-bc7c-c40ceb20f771 f1a2a5a7f2cc20195a046af524d06b00 {"aliquot_tag": "ALQ_5dda33d7", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.RNA-Seq.S28_L007_R1.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R1_001.fastq.gz 3456382054 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 f4b5d44d-2940-459d-9c29-ed2e26f03a5f 0fff04d854f774a74f6a1a189148275c {"aliquot_tag": "ALQ_ea02dd73", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04037.RNA-Seq.S28_L007_R2.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R2_001.fastq.gz 3796085160 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 16095216-8046-4e3f-a7de-1846f17d9a36 4c12a88fc79b4b6a935d3012771a9a93 {"aliquot_tag": "ALQ_ea02dd73", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04037.RNA-Seq.transcriptome.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.transcriptome.gdc_realn.bam 7520087024 BAM transcriptome harmonized CPTAC3 d83f7e17-c5a0-4e5e-919e-bd046130c1cb fb117a628ad831ab5740f25124dee9f4 {"aliquot_tag": "ALQ_ea02dd73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04037.RNA-Seq.transcriptome.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.transcriptome.gdc_realn.bam 13261306906 BAM transcriptome harmonized CPTAC3 f9ddbcab-c739-4350-9e74-fc0e32dfff05 33d43476e21e6b12611c0cae9d019bee {"aliquot_tag": "ALQ_5dda33d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.WGS.N C3L-04037 LUAD WGS blood_normal CPT0229680002 CPT0229680002.WholeGenome.RP-1303.bam 66335745227 BAM submitted_aligned CPTAC3 a2dccb7c-d270-4f83-94e1-f1f7b81c8caf 1f9144cfa4ba1d512afabc9078bcd1d9 {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04037.WGS.N.hg38 C3L-04037 LUAD WGS blood_normal CPT0229680002 4b9d7cb8-05e7-499d-838a-fdf63a4a93ad_wgs_gdc_realn.bam 97452630425 BAM harmonized CPTAC3 968471ea-9f9c-41c3-af74-b7bf3b22cd75 e4ec89aa2a60cd6dcc8ecadb00a6ab95 {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04037.WGS.T C3L-04037 LUAD WGS tumor CPT0229540007 CPT0229540007.WholeGenome.RP-1303.bam 75274750636 BAM submitted_aligned CPTAC3 60d3a2c3-06d6-4827-a4d9-1d114d965fd0 59ae444d9da31a9e9af59afb640ac8f1 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.WGS.T.hg38 C3L-04037 LUAD WGS tumor CPT0229540007 2ed956a8-b3a3-41e2-ade8-aff5e3eae792_wgs_gdc_realn.bam 109398264105 BAM harmonized CPTAC3 50a5c027-3fb0-4ab1-802d-0d0aa8991ee5 8db9a396d1ba36499cabc9f656ed2cc7 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.WXS.N C3L-04037 LUAD WXS blood_normal CPT0229680002 CPT0229680002.WholeExome.RP-1303.bam 32853460944 BAM submitted_aligned CPTAC3 aed55ad1-14ac-4eed-a1b9-3254482d0cb4 48fb0699b8e322ea59c1657336167dfb {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04037.WXS.N.hg38 C3L-04037 LUAD WXS blood_normal CPT0229680002 4b9d7cb8-05e7-499d-838a-fdf63a4a93ad_wxs_gdc_realn.bam 45174368924 BAM harmonized CPTAC3 875d94fc-56c9-464a-b2c5-ae1fda9beddd 0b6e329802afb780a06a933a7f2e744c {"aliquot_tag": "ALQ_e9abfc15", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04037.WXS.T C3L-04037 LUAD WXS tumor CPT0229540007 CPT0229540007.WholeExome.RP-1303.bam 26050826944 BAM submitted_aligned CPTAC3 cc0a363c-33a6-4f84-9cba-9589138bb5c9 2047f44dab74f9756cd44324766b3f85 {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04037.WXS.T.hg38 C3L-04037 LUAD WXS tumor CPT0229540007 2ed956a8-b3a3-41e2-ade8-aff5e3eae792_wxs_gdc_realn.bam 35933577035 BAM harmonized CPTAC3 d742bb94-3ee9-4860-b5a7-4cf3a8072b7d 779c9a4704c7763a12608f5380ca72aa {"aliquot_tag": "ALQ_daa59735", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04038.MethArray.Green.T C3L-04038 GBM Methylation_Array tumor CPT0256720007 204372030090_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 bf66a9f9-c721-4bb6-aa0c-21ca6574b2ef 87197b28d1920d0d095eec3820cd80b8 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.MethArray.Red.T C3L-04038 GBM Methylation_Array tumor CPT0256720007 204372030090_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 73a53eb1-7efb-4085-8b36-f1d074197b16 698ce1b148b413adac778782648860b5 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.miRNA-Seq.S36_L002_R1.T C3L-04038 GBM miRNA-Seq tumor CPT0256720010 200403_UNC31-K00269_0274_AHCF7GBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 178241410 BAM S36_L002_R1 submitted_unaligned CPTAC3 c3536cfa-1998-4132-ba94-0f410cc2ca04 026e29295b9954392fbf04bd8deb4fa0 {"aliquot_tag": "ALQ_63df1e8c", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.miRNA-Seq.T.hg38 C3L-04038 GBM miRNA-Seq tumor CPT0256720010 7dd51466-f17c-4da6-afd8-5bfb2986eccc_mirnaseq_gdc_realn.bam 198964432 BAM harmonized CPTAC3 2eb20cbb-3808-4d16-83bb-f7e01ca86189 3daa578b646dcf0e99a2486578370ec8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.RNA-Seq.chimeric.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.chimeric.gdc_realn.bam 207873040 BAM chimeric harmonized CPTAC3 dd032e6b-11b7-4318-a6d6-54710b880c68 e85a8383afc6c1212b0d593406a190d8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.RNA-Seq.genomic.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.genomic.gdc_realn.bam 7519214609 BAM genomic harmonized CPTAC3 62756f36-2cda-4421-9915-60ed3185c0cf ef357d603f49d585c51e73c9dd236db8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.RNA-Seq.S4_L001_R1.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 4b1047c2-0ebd-425a-bbb5-558034d20ee0 bb8a984b5978f1dfd65d46ddd4302b12 {"aliquot_tag": "ALQ_63df1e8c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.RNA-Seq.S4_L001_R2.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 432fbf58-dc9c-45c4-aad4-ccb291b8c512 bae98b409546c90f3f354cab2a324e21 {"aliquot_tag": "ALQ_63df1e8c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.RNA-Seq.transcriptome.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.transcriptome.gdc_realn.bam 6975839557 BAM transcriptome harmonized CPTAC3 33ae4a94-d011-41f5-aac2-9d7729a89824 4d71eec19b49f3a5ba3ed24141ad3bb8 {"aliquot_tag": "ALQ_63df1e8c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.WGS.N C3L-04038 GBM WGS blood_normal CPT0256820002 CPT0256820002.WholeGenome.RP-2158.bam 25899155371 BAM submitted_aligned CPTAC3 e05914be-d79b-4d2a-943d-e2ffa3f8f761 f768b769ad4bcea9b24a17d14078c8c6 {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04038.WGS.N.hg38 C3L-04038 GBM WGS blood_normal CPT0256820002 e5fa0684-79a6-4278-a7cf-29880b9ce537_wgs_gdc_realn.bam 78286150186 BAM harmonized CPTAC3 21d14944-67f4-4d0c-bfd5-ab7986f4c4c5 8dcc84c678d031574684437ad13a9c1e {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04038.WGS.T C3L-04038 GBM WGS tumor CPT0256720007 CPT0256720007.WholeGenome.RP-2158.bam 28044770829 BAM submitted_aligned CPTAC3 80ca3087-4bf6-4b8c-8f8e-58e43b23a65a c74534c6baced44d6f40d2e258cea9e6 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.WGS.T.hg38 C3L-04038 GBM WGS tumor CPT0256720007 17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wgs_gdc_realn.bam 82873631851 BAM harmonized CPTAC3 9b5bfea2-570b-4285-85db-df3e57f7fbf6 888b3df7fd07829ee56d851c29b9f05c {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.WXS.N C3L-04038 GBM WXS blood_normal CPT0256820002 CPT0256820002.WholeExome.RP-1303.bam 26276419705 BAM submitted_aligned CPTAC3 d431b988-27da-45a1-b85a-7e412e19f42a c9f091e04d95486749a2fa5812bbacf3 {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04038.WXS.N.hg38 C3L-04038 GBM WXS blood_normal CPT0256820002 e5fa0684-79a6-4278-a7cf-29880b9ce537_wxs_gdc_realn.bam 36239960295 BAM harmonized CPTAC3 d68ef551-045b-4c28-991c-54176b2ef8b2 c0d87c0314be02793e219b7a780e0db7 {"aliquot_tag": "ALQ_659cfc34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04038.WXS.T C3L-04038 GBM WXS tumor CPT0256720007 CPT0256720007.WholeExome.RP-1303.bam 20717451239 BAM submitted_aligned CPTAC3 249c70cd-cfd6-49b5-9c77-33b54ab3004e ac80d75dac283821d7c82361048f8f13 {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04038.WXS.T.hg38 C3L-04038 GBM WXS tumor CPT0256720007 17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wxs_gdc_realn.bam 29805069310 BAM harmonized CPTAC3 593cbb4d-9753-427f-9bca-da27067a715b dd7b117882a9821a50b309cdb23942fe {"aliquot_tag": "ALQ_e4a0ba6e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04040.MethArray.Green.T C3L-04040 LUAD Methylation_Array tumor CPT0232060007 203561450099_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8548dfe6-86b6-4a60-b533-25a67c025fc0 5a3f5fb1f78bdc2d849ad6ba26420a79 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.MethArray.Red.T C3L-04040 LUAD Methylation_Array tumor CPT0232060007 203561450099_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 408b4b68-6703-44b6-aee4-78bfdbd59773 8377f0c91819d61e445d2eeafec7ff0b {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.miRNA-Seq.S33_L004_R1.T C3L-04040 LUAD miRNA-Seq tumor CPT0232060010 190722_UNC31-K00269_0234_AH7VGTBBXY_CTCAGA_S33_L004_R1_001.unaln.bam 195919013 BAM S33_L004_R1 submitted_unaligned CPTAC3 3848f7e6-5630-4da2-80e2-95dc378b59f2 fbdcc60cbecfd47301b615d526ece895 {"aliquot_tag": "ALQ_b97aa560", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.miRNA-Seq.T.hg38 C3L-04040 LUAD miRNA-Seq tumor CPT0232060010 3b5d4942-68e9-43d6-8f2d-969f14c1fbfd_mirnaseq_gdc_realn.bam 216073600 BAM harmonized CPTAC3 9b780344-ac90-4b71-85ec-0934335f5c68 8d2da8fe56c4615800d13d4762b6fc0f {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.RNA-Seq.chimeric.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.chimeric.gdc_realn.bam 31871501 BAM chimeric harmonized CPTAC3 6b84db1f-80e0-4d5f-9d69-dddd445f0979 2e23b4ebecceea6a1d7ef5604123935b {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.RNA-Seq.genomic.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.genomic.gdc_realn.bam 12029819325 BAM genomic harmonized CPTAC3 ea54302e-60f1-48c6-98ab-779bead38ae1 164bde4219c6482b6b7a3ffae1b80c8a {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.RNA-Seq.S20_L005_R1.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R1_001.fastq.gz 4182858994 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff cb6b31ddb5f5a3ea0a3374760d8fa1e7 {"aliquot_tag": "ALQ_b97aa560", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.RNA-Seq.S20_L005_R2.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R2_001.fastq.gz 4821163674 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 5a047da7-59a1-41f5-9ec1-728f230c506b 56a7e45e4b07f77c1b3f34a44e3e9c4f {"aliquot_tag": "ALQ_b97aa560", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.RNA-Seq.transcriptome.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.transcriptome.gdc_realn.bam 9989857381 BAM transcriptome harmonized CPTAC3 4e04d662-f4ee-4f74-86b2-f9fafcd32899 65fdc04200a1efda61ebf0a26389c4f8 {"aliquot_tag": "ALQ_b97aa560", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.WGS.N C3L-04040 LUAD WGS blood_normal CPT0232220002 CPT0232220002.WholeGenome.RP-1303.bam 75127227326 BAM submitted_aligned CPTAC3 16084dc4-83d6-4c1b-a93d-d648b0c7a84d aecfab551f658f7880cc9703f9157992 {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04040.WGS.N.hg38 C3L-04040 LUAD WGS blood_normal CPT0232220002 3125ce10-eeb2-4a71-9101-3576d527d1a7_wgs_gdc_realn.bam 110179630465 BAM harmonized CPTAC3 5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f dea63130391cee587bd0c07886d8a93d {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04040.WGS.T C3L-04040 LUAD WGS tumor CPT0232060007 CPT0232060007.WholeGenome.RP-1303.bam 78991614747 BAM submitted_aligned CPTAC3 8701800d-a7cc-498e-acdc-1455ea7b7ae9 c91bddf9515572a422065f202bbff18a {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.WGS.T.hg38 C3L-04040 LUAD WGS tumor CPT0232060007 f9d4fefb-3a1d-479f-a26f-bec43f5e2afc_wgs_gdc_realn.bam 115023520974 BAM harmonized CPTAC3 46922002-23c9-47e7-8119-036e1d14f8e8 a56eef2ecc4f4f41daf21cd299bab2e0 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.WXS.N C3L-04040 LUAD WXS blood_normal CPT0232220002 CPT0232220002.WholeExome.RP-1303.bam 28559558198 BAM submitted_aligned CPTAC3 c18b4120-5e10-418f-a423-4c44ce22fcad a452f6a15c12bb2014e8736718f236a4 {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04040.WXS.N.hg38 C3L-04040 LUAD WXS blood_normal CPT0232220002 3125ce10-eeb2-4a71-9101-3576d527d1a7_wxs_gdc_realn.bam 39530707118 BAM harmonized CPTAC3 c3663e14-867c-437c-8f19-6006b7f20f17 eb5f2583dd2756decf97bae1ce59a549 {"aliquot_tag": "ALQ_f627f2c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04040.WXS.T C3L-04040 LUAD WXS tumor CPT0232060007 CPT0232060007.WholeExome.RP-1303.bam 27178022178 BAM submitted_aligned CPTAC3 9f1cb7f3-d727-41d9-bab4-9e94b7a846e3 6a5df2ccbc910d06602b2b34a8b28eb0 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04040.WXS.T.hg38 C3L-04040 LUAD WXS tumor CPT0232060007 f9d4fefb-3a1d-479f-a26f-bec43f5e2afc_wxs_gdc_realn.bam 37737582526 BAM harmonized CPTAC3 edaaa44b-59b2-41d0-b63b-437908fb076e fe649927548d58da390060aa6cd83ee1 {"aliquot_tag": "ALQ_3e050182", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.MethArray.Green.A C3L-04071 LSCC Methylation_Array tissue_normal CPT0221220006 203219650202_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 051f2557-d2cc-4ab1-85ed-ce6b4a604a15 f167e9f4de0722a7d6254669e57d304b {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.MethArray.Green.T C3L-04071 LSCC Methylation_Array tumor CPT0221200006 203220070171_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 77ae509e-80cb-422b-ae47-86ccf17ba587 1b4ab7476110fdf7c9e2a1414e84e6d4 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.MethArray.Red.A C3L-04071 LSCC Methylation_Array tissue_normal CPT0221220006 203219650202_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 03e59a5f-57d0-4878-8469-76fcab37eabc 3811d97427d526f3fb4cef9d3ad92572 {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.MethArray.Red.T C3L-04071 LSCC Methylation_Array tumor CPT0221200006 203220070171_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3bd3d84c-fcc7-488c-a0b7-29278303801c 2ff5c8de957d6be85028cae5ea3c3801 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.miRNA-Seq.A.hg38 C3L-04071 LSCC miRNA-Seq tissue_normal CPT0221220009 4d713bca-6bf5-44d4-a31b-ed6f4af6dc10_mirnaseq_gdc_realn.bam 251478846 BAM harmonized CPTAC3 cf700719-16ae-4210-825a-5e1b6c622ec7 cc1896c8469d1f5b56501c569eb6fb93 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.miRNA-Seq.S41_L004_R1.A C3L-04071 LSCC miRNA-Seq tissue_normal CPT0221220009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTTGA_S41_L004_R1_001.unaln.bam 231740708 BAM S41_L004_R1 submitted_unaligned CPTAC3 efab8414-b4b4-480b-876e-fee220d0ea99 240be32f5f7ad264b2cd68ec3ead6e94 {"aliquot_tag": "ALQ_9cb7314d", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.miRNA-Seq.S45_L002_R1.T C3L-04071 LSCC miRNA-Seq tumor CPT0221200009 190206_UNC31-K00269_0191_AH2WY5BBXY_TGACCA_S45_L002_R1_001.unaln.bam 156271157 BAM S45_L002_R1 submitted_unaligned CPTAC3 ee566f28-70ba-4e82-ad3a-7aa410560e07 292e1e75dd475be946f2c804f3c0123b {"aliquot_tag": "ALQ_e677622d", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.miRNA-Seq.T.hg38 C3L-04071 LSCC miRNA-Seq tumor CPT0221200009 4bf84c57-5998-4523-baba-060a37b8674f_mirnaseq_gdc_realn.bam 166820565 BAM harmonized CPTAC3 4cccdb42-fd1e-4c74-a4f5-13587558090f aaaf533f9a55f8e10eaaa1bf6a96e84e {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.RNA-Seq.chimeric.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.chimeric.gdc_realn.bam 107127253 BAM chimeric harmonized CPTAC3 2c134722-2869-46e9-8f0e-4273a47c1bfe b27c2779889c67ca3531c3adc9f05f44 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.RNA-Seq.chimeric.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.chimeric.gdc_realn.bam 143747850 BAM chimeric harmonized CPTAC3 24068f4b-ff56-4351-9dbf-c3aef829590d c745b8bccc3e42808dfb28db461b2452 {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.RNA-Seq.genomic.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.genomic.gdc_realn.bam 8076144383 BAM genomic harmonized CPTAC3 83ed5d65-013c-4fef-b84e-0c33b9a38f26 51eeb30ea510565839804171dc347926 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.RNA-Seq.genomic.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.genomic.gdc_realn.bam 15571520279 BAM genomic harmonized CPTAC3 fc8b2936-7478-441f-9f7d-fc12a4e93f5f c1be89da0ef09517ccfcf4205f304a90 {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.RNA-Seq.S12_L003_R1.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R1_001.fastq.gz 6951487565 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 a558614c-7e6d-4b94-9755-9e0fa0b9901a 386e665a2cf395c7e693a61cd87f88b6 {"aliquot_tag": "ALQ_e677622d", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.RNA-Seq.S12_L003_R2.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R2_001.fastq.gz 7527528669 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 b7cd0e96-3009-444e-b5ff-e339fdca5aa7 63fcc24f361e0f8a18190d52b7aba380 {"aliquot_tag": "ALQ_e677622d", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.RNA-Seq.S7_L008_R1.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3212017003 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 0cf40994-b735-414b-9779-e4b18f9009d5 40865fff718ea3e9d243b73143121a6e {"aliquot_tag": "ALQ_9cb7314d", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.RNA-Seq.S7_L008_R2.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3614110640 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 7476ad07-0f47-4459-921a-3f37129a47a3 53529f958cb6bb8a30463d85016bcaea {"aliquot_tag": "ALQ_9cb7314d", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.RNA-Seq.transcriptome.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.transcriptome.gdc_realn.bam 8576238516 BAM transcriptome harmonized CPTAC3 a7082210-5a40-4b4c-85ef-19d7001ecd64 bb9c88f51431c29785745028971da548 {"aliquot_tag": "ALQ_9cb7314d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.RNA-Seq.transcriptome.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.transcriptome.gdc_realn.bam 16512761947 BAM transcriptome harmonized CPTAC3 81e7ae12-a221-44d4-8675-ee2d3c937425 059d90a8d20e42921289dd8a832f7d1f {"aliquot_tag": "ALQ_e677622d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.WGS.N C3L-04071 LSCC WGS blood_normal CPT0220490002 CPT0220490002.WholeGenome.RP-1303.bam 64119487686 BAM submitted_aligned CPTAC3 82acc8a7-ca5f-497f-9bd7-7de44023f8ab 24abbedb6736ef78eb93fab978d91337 {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04071.WGS.N.hg38 C3L-04071 LSCC WGS blood_normal CPT0220490002 3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wgs_gdc_realn.bam 94307388841 BAM harmonized CPTAC3 6072dfd0-63ad-46d4-a039-35a0f851216b b33620b83bdb82324c7cd9ef13f8ba3a {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04071.WGS.T C3L-04071 LSCC WGS tumor CPT0221200006 CPT0221200006.WholeGenome.RP-1303.bam 56456613353 BAM submitted_aligned CPTAC3 7278c03d-f6ff-4e5c-a3a6-332b37fcd674 6ab5f2194e2d664b1b54f8aa0752ded3 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.WGS.T.hg38 C3L-04071 LSCC WGS tumor CPT0221200006 80cdb7b5-f5b1-4343-a227-34c9e836f2ad_wgs_gdc_realn.bam 83429903448 BAM harmonized CPTAC3 55d13f2d-9a6a-49ec-a9f2-258019a74413 c3f0bf037e9b46b2ccafc899f42328bf {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.WXS.A C3L-04071 LSCC WXS tissue_normal CPT0221220006 CPT0221220006.WholeExome.RP-1303.bam 20203906184 BAM submitted_aligned CPTAC3 d33baaa7-d656-48c4-a59a-43dd5c52a32e df323f7cea19fe78f652c52652b003fe {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.WXS.A.hg38 C3L-04071 LSCC WXS tissue_normal CPT0221220006 7cf5441a-d9c0-42a3-a97d-6e39cbb7e3ea_wxs_gdc_realn.bam 27716899411 BAM harmonized CPTAC3 8468d9d6-0dbf-433f-8876-bb9dd6364f6e 067d95336bfe4676a50ba751634e96e5 {"aliquot_tag": "ALQ_c082cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04071.WXS.N C3L-04071 LSCC WXS blood_normal CPT0220490002 CPT0220490002.WholeExome.RP-1303.bam 24810412658 BAM submitted_aligned CPTAC3 fa6f2ac6-2351-4e04-b2bb-499a2624fffd e13e8ca77157c0b3ca7461739b87501f {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04071.WXS.N.hg38 C3L-04071 LSCC WXS blood_normal CPT0220490002 3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wxs_gdc_realn.bam 34178384162 BAM harmonized CPTAC3 e401f9d3-e7dd-4353-be52-a003345619c2 a511e186c83793147369701a515364d8 {"aliquot_tag": "ALQ_c9b317d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04071.WXS.T C3L-04071 LSCC WXS tumor CPT0221200006 CPT0221200006.WholeExome.RP-1303.bam 24069272019 BAM submitted_aligned CPTAC3 325e51fd-7604-420d-b2a8-a3d2e9e371c9 8cbccebb1a17505fa50985f365122d7b {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04071.WXS.T.hg38 C3L-04071 LSCC WXS tumor CPT0221200006 80cdb7b5-f5b1-4343-a227-34c9e836f2ad_wxs_gdc_realn.bam 33211413787 BAM harmonized CPTAC3 05e9cf45-ac6d-4e99-810f-2bc21c8fb703 acb23aa89dbe61e3782bb3087d6cb981 {"aliquot_tag": "ALQ_76c87fbc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.MethArray.Green.T C3L-04072 PDA Methylation_Array tumor CPT0221240007 203561620159_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 84be98f3-cf54-4838-8f6a-f808af9837f6 9b9e427121cb31159b3b81b0a2584d74 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.MethArray.Red.T C3L-04072 PDA Methylation_Array tumor CPT0221240007 203561620159_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 7d560fe0-fd27-4eea-949a-49ee07030036 9dc7ea31fd8ece5cce4523da48901d78 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.miRNA-Seq.A.hg38 C3L-04072 PDA miRNA-Seq tissue_normal CPT0221250007 0697a12e-c985-4510-8bc2-7438e4252138_mirnaseq_gdc_realn.bam 188053294 BAM harmonized CPTAC3 d52840df-ec63-42e3-9d1e-129c22e2d72a 423629d9fb597cca9d84b92debec1abe {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04072.miRNA-Seq.S146_L008_R1.A C3L-04072 PDA miRNA-Seq tissue_normal CPT0221250007 190828_UNC32-K00270_0200_BH7GVJBBXY_TCATTC_S146_L008_R1_001.unaln.bam 165020240 BAM S146_L008_R1 submitted_unaligned CPTAC3 1632f4a9-c6a1-4cdf-835d-1d13c2cfb9c7 ea4663769f739e345a7dc01e3418bf4a {"aliquot_tag": "ALQ_c92fc05a", "sample": "S146", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04072.miRNA-Seq.S33_L004_R1.T C3L-04072 PDA miRNA-Seq tumor CPT0221240010 190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L004_R1_001.unaln.bam 242119996 BAM S33_L004_R1 submitted_unaligned CPTAC3 459b14b3-c375-4a50-8f7f-43e6bf7a87f7 8af14c781c4ed3b2544eec14d875e92f {"aliquot_tag": "ALQ_73304d08", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.miRNA-Seq.T.hg38 C3L-04072 PDA miRNA-Seq tumor CPT0221240010 aac3a103-654d-4401-b99c-5ca7da7f909e_mirnaseq_gdc_realn.bam 268481879 BAM harmonized CPTAC3 d561aaca-5cd8-404a-892b-538beec472af 7bb74012f1e4ced62bd92a4ecf79642c {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.RNA-Seq.chimeric.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.chimeric.gdc_realn.bam 43701221 BAM chimeric harmonized CPTAC3 4558bd0f-87d2-4e32-96c6-f64fd52ff38a 9c41ba78ea05d56254fa2decb6075ca5 {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04072.RNA-Seq.chimeric.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.chimeric.gdc_realn.bam 140357915 BAM chimeric harmonized CPTAC3 a424dae8-8591-47f5-9214-b0e9be3ca67b 06fb8f28cf40dbb7cee94a875904a9e9 {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.RNA-Seq.genomic.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.genomic.gdc_realn.bam 10049068458 BAM genomic harmonized CPTAC3 42a4b1f3-006d-42e9-986f-f4d9c931021b 27c2562cff10916cb6d907bcd34cc60a {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04072.RNA-Seq.genomic.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.genomic.gdc_realn.bam 8484129318 BAM genomic harmonized CPTAC3 461063b4-c84b-4c65-84c4-ca5423e1263b c187878d8c4257d86359aa31084bb53b {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.RNA-Seq.S13_L004_R1.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R1_001.fastq.gz 4567399648 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 6384d98c-0431-454c-bfbe-02a0eeb169f7 4e52c481371f342dc1845a7833634bb6 {"aliquot_tag": "ALQ_c92fc05a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04072.RNA-Seq.S13_L004_R2.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R2_001.fastq.gz 5302939594 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 4f81c80b-93d0-4e4a-96e6-137b1e2dd16b f16271839dce14fb279d250fec9647d1 {"aliquot_tag": "ALQ_c92fc05a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04072.RNA-Seq.S3_L001_R1.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R1_001.fastq.gz 3281861542 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 3e143830-c835-4410-86c9-3519bc46ee9f 433df9e30654677fd3026a468f61b2c0 {"aliquot_tag": "ALQ_73304d08", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.RNA-Seq.S3_L001_R2.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R2_001.fastq.gz 3203441845 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 69a69920-dac4-4d05-803c-a89a1b444820 8d3c4b00b2cbd79a054a05c0578b015f {"aliquot_tag": "ALQ_73304d08", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.RNA-Seq.transcriptome.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.transcriptome.gdc_realn.bam 12475385233 BAM transcriptome harmonized CPTAC3 12936492-5be7-4724-97a9-04075a9d870c d0fb74d0d2c26a38a2fc82c2204e03ac {"aliquot_tag": "ALQ_c92fc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04072.RNA-Seq.transcriptome.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.transcriptome.gdc_realn.bam 7090139619 BAM transcriptome harmonized CPTAC3 f8940b99-6a5b-4718-a084-478e93644617 84ce77a88ed2ce52fa004d1595ff235d {"aliquot_tag": "ALQ_73304d08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.Targeted.T C3L-04072 PDA Targeted_Sequencing tumor CPT0221240007 CPT0221240007.CustomSelection.RP-1303.PDO-18786.bam 5683060183 BAM submitted_aligned CPTAC3 acea7c01-62b7-465e-9de4-5d81429affad 4aacb524547fba1968680af2f17ade4f {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.Targeted.T.hg38 C3L-04072 PDA Targeted_Sequencing tumor CPT0221240007 a8a006ee-1db0-4b57-9437-85d29dc1084e_targetedsequencing_gdc_realn.bam 7798261186 BAM harmonized CPTAC3 3f7b423f-0857-4f14-a821-7e087b201b3c 44ef259c74f87dbd308b3f36b57cb1f3 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.WGS.N C3L-04072 PDA WGS blood_normal CPT0220470002 CPT0220470002.WholeGenome.RP-1303.bam 70102215285 BAM submitted_aligned CPTAC3 28c7f814-5699-4792-aafd-c135c1711886 e598d665e5a3b99f47610e38857bfe74 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04072.WGS.N.hg38 C3L-04072 PDA WGS blood_normal CPT0220470002 e7f1b14d-4706-4e02-8833-4e72f56a82c0_wgs_gdc_realn.bam 101107887523 BAM harmonized CPTAC3 4d9437e6-d8dd-44ab-b1e5-a68bb179cc11 5c66df689045574e3499ff46687d40a7 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04072.WGS.T C3L-04072 PDA WGS tumor CPT0221240007 CPT0221240007.WholeGenome.RP-1303.bam 79387089817 BAM submitted_aligned CPTAC3 68d48600-d129-420c-b8e3-74c6e23a384c d341b1a4177efecbca2466fb29a8a413 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.WGS.T.hg38 C3L-04072 PDA WGS tumor CPT0221240007 a8a006ee-1db0-4b57-9437-85d29dc1084e_wgs_gdc_realn.bam 114864137399 BAM harmonized CPTAC3 abe5e972-1d12-4748-8458-70d58db354f5 2c7f74d847f46b84c76bbd263b88dd18 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.WXS.N C3L-04072 PDA WXS blood_normal CPT0220470002 CPT0220470002.WholeExome.RP-1303.bam 23709292733 BAM submitted_aligned CPTAC3 bc3fc5af-189f-4dfb-b49e-c71d083ac5b4 9346b76f4c15fd3dfd9916ff71b811a5 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04072.WXS.N.hg38 C3L-04072 PDA WXS blood_normal CPT0220470002 e7f1b14d-4706-4e02-8833-4e72f56a82c0_wxs_gdc_realn.bam 33058317419 BAM harmonized CPTAC3 56b9afe1-7dd1-4c3a-9c27-93967e2aa4b6 3f5b7a22d0a7e86b6214c27d527308c5 {"aliquot_tag": "ALQ_b3ab8f1c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04072.WXS.T C3L-04072 PDA WXS tumor CPT0221240007 CPT0221240007.WholeExome.RP-1303.bam 45846897658 BAM submitted_aligned CPTAC3 214f87ce-9f39-4a11-9106-cd516cfb1c92 95325129f2273ba828541e46dc4058ce {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04072.WXS.T.hg38 C3L-04072 PDA WXS tumor CPT0221240007 a8a006ee-1db0-4b57-9437-85d29dc1084e_wxs_gdc_realn.bam 63966509812 BAM harmonized CPTAC3 7e2ac5aa-3ad4-4e98-abfd-3a83afcdef5f 7ee7a8659ac9459f2e38dc7cd6d4dc02 {"aliquot_tag": "ALQ_f44fe9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04079.MethArray.Green.A C3L-04079 LSCC Methylation_Array tissue_normal CPT0304140006 204372030015_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 c7dd055a-0168-4fdb-971b-b89f749c6e6c 92e8ad9fca67bdc38e8787f62421a16c {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.MethArray.Green.T C3L-04079 LSCC Methylation_Array tumor CPT0304120006 204367470132_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 c9aede5e-2574-4ffb-984c-8209a99aacce 7d1e34e0f10c7dcfb4fe52803c813467 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.MethArray.Red.A C3L-04079 LSCC Methylation_Array tissue_normal CPT0304140006 204372030015_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 769478ae-2592-46fe-80b8-07935a1d1325 729b3189673258d9131f04414003b2ed {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.MethArray.Red.T C3L-04079 LSCC Methylation_Array tumor CPT0304120006 204367470132_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 fb794db9-86bb-4b04-aa5e-88c9779e5cdc dc1828cc34dd91217a25af0fca77d692 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.miRNA-Seq.A.hg38 C3L-04079 LSCC miRNA-Seq tissue_normal CPT0304140009 c61c2663-c4a6-4f22-9a3e-8c88cdd6fef4_mirnaseq_gdc_realn.bam 289223267 BAM harmonized CPTAC3 1f096955-4765-4ed7-8b70-aac094bce777 7afbf7fb320b9752d9ae48bf3211c3da {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.miRNA-Seq.S24_L001_R1.A C3L-04079 LSCC miRNA-Seq tissue_normal CPT0304140009 200325_UNC31-K00269_0272_AHHC2NBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 255806807 BAM S24_L001_R1 submitted_unaligned CPTAC3 fbf64f36-d546-4ab4-a32e-29a7c7d0daa7 1bb4bddb600e38b05e1a2f80dd04ebb8 {"aliquot_tag": "ALQ_92058ada", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.miRNA-Seq.S9_L008_R1.T C3L-04079 LSCC miRNA-Seq tumor CPT0304120009 200224_UNC31-K00269_0267_AHC722BBXY_GATCAG_S9_L008_R1_001.unaln.bam 206680936 BAM S9_L008_R1 submitted_unaligned CPTAC3 3b77d0cd-51c2-4f06-97d2-4ce4492633d7 47e81999372a81cccc4d764d2dee43f7 {"aliquot_tag": "ALQ_1d457f7a", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.miRNA-Seq.T.hg38 C3L-04079 LSCC miRNA-Seq tumor CPT0304120009 5aae3bcc-53d6-42c6-b76a-413f4e8f8942_mirnaseq_gdc_realn.bam 229476333 BAM harmonized CPTAC3 f53d5b80-32d6-4c25-801d-789b9f117d4e b384c9dbc66b216cd2e1bbcd65a59922 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.RNA-Seq.chimeric.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.chimeric.gdc_realn.bam 63287208 BAM chimeric harmonized CPTAC3 9734a833-c7af-4135-8326-0baec2820f27 ddd0001b9b0d34acd0a023794d8549be {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.RNA-Seq.chimeric.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.chimeric.gdc_realn.bam 34155161 BAM chimeric harmonized CPTAC3 0fb487ae-fd95-45c4-b64b-bb3bbe76304e a588f8a7ef2a0125fbd5b18835e2e254 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.RNA-Seq.genomic.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.genomic.gdc_realn.bam 8130247384 BAM genomic harmonized CPTAC3 eaf5af6f-5d20-4858-ab0d-5e5d0f9a35ce 62e501299a22fbd645a77b41ed3670a7 {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.RNA-Seq.genomic.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.genomic.gdc_realn.bam 7857414214 BAM genomic harmonized CPTAC3 c8b4c869-74f1-4bc3-bc52-d006ef3f7746 fbbfa49d7813bd377251961abf22f555 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.RNA-Seq.S32_L008_R1.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R1_001.fastq.gz 4129549202 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 6889624b-4f29-4f47-a3b2-2614c9f55cb9 a630d74eaea2c4f2ec566adc2cbf1ef8 {"aliquot_tag": "ALQ_92058ada", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.RNA-Seq.S32_L008_R2.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R2_001.fastq.gz 4228325182 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 c4d4d9f5-28a6-43fc-a0dd-8a5012893224 6873503e3b668d4a98454c6e6c8c093c {"aliquot_tag": "ALQ_92058ada", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.RNA-Seq.S9_L003_R1.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R1_001.fastq.gz 3690093354 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 2815a18f-e1ba-45de-a67e-2ac1988ec582 cead2c5c835ab34e38da6f24e600dc49 {"aliquot_tag": "ALQ_1d457f7a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.RNA-Seq.S9_L003_R2.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R2_001.fastq.gz 3997440822 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 10844c0d-45f2-4b34-a035-a4f108e93efc 656cd059003417fe8b652915cb6a6e2c {"aliquot_tag": "ALQ_1d457f7a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.RNA-Seq.transcriptome.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.transcriptome.gdc_realn.bam 10029873482 BAM transcriptome harmonized CPTAC3 d3876151-0a58-490f-abc2-e77de17cdfdc a4f9ee2ae5f79a203f05038da67e5b2a {"aliquot_tag": "ALQ_92058ada", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.RNA-Seq.transcriptome.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.transcriptome.gdc_realn.bam 9928753388 BAM transcriptome harmonized CPTAC3 c86a8754-d004-46c6-9bbe-a643ca3f9d5c cc0834e2a75459eeb831c4b0c439a522 {"aliquot_tag": "ALQ_1d457f7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.WGS.N C3L-04079 LSCC WGS blood_normal CPT0305040002 CPT0305040002.WholeGenome.RP-2158.bam 24347450858 BAM submitted_aligned CPTAC3 41fef29f-db09-4983-8548-722fe4ad9e45 b80372ff61768513d6df6e942f84049c {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04079.WGS.N.hg38 C3L-04079 LSCC WGS blood_normal CPT0305040002 9bea6b89-38ce-45c1-8fb2-9c0be6be4cd2_wgs_gdc_realn.bam 70378739186 BAM harmonized CPTAC3 6a3d4196-15a5-48bd-bf17-52f093143682 6847eea5773a3833525b654fceac1a69 {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04079.WGS.T C3L-04079 LSCC WGS tumor CPT0304120006 CPT0304120006.WholeGenome.RP-2158.bam 23699922433 BAM submitted_aligned CPTAC3 fef741d5-c6e6-467a-99cc-af68ae9bb561 85f444beb6878506c1f372203d3f5da5 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.WGS.T.hg38 C3L-04079 LSCC WGS tumor CPT0304120006 1acb4845-2e95-438b-95ad-2598b8dce7e7_wgs_gdc_realn.bam 71588721822 BAM harmonized CPTAC3 40e8d818-d2c1-4bf9-a55b-0835e0ed02db a751272a39687a625744500f8c05c3ee {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.WXS.A C3L-04079 LSCC WXS tissue_normal CPT0304140006 CPT0304140006.WholeExome.RP-1303.bam 19991935832 BAM submitted_aligned CPTAC3 5010dd15-dafb-4d9a-a528-69fedff1d4be b7ed03da077163a2db023fee06fc00df {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.WXS.A.hg38 C3L-04079 LSCC WXS tissue_normal CPT0304140006 ccfa6c0c-3cdd-4e18-9b5b-ec7ede0f5fbd_wxs_gdc_realn.bam 28039606654 BAM harmonized CPTAC3 bbe8c181-63f1-4b73-912d-8b91aafe3ca6 25515eab334e5e508c6b9bf8b97330fb {"aliquot_tag": "ALQ_2ba974b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04079.WXS.N C3L-04079 LSCC WXS blood_normal CPT0305040002 CPT0305040002.WholeExome.RP-1303.bam 26883502029 BAM submitted_aligned CPTAC3 13518d81-cf78-4be4-af7f-74fffab3ad67 9fd910576e4f17e3ee2a917804ae7c31 {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04079.WXS.N.hg38 C3L-04079 LSCC WXS blood_normal CPT0305040002 9bea6b89-38ce-45c1-8fb2-9c0be6be4cd2_wxs_gdc_realn.bam 37056907198 BAM harmonized CPTAC3 74809893-4a2d-41fd-8c1a-b6059707b845 cde281513d9eec6ca397f7741e7f2824 {"aliquot_tag": "ALQ_68fc8b43", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04079.WXS.T C3L-04079 LSCC WXS tumor CPT0304120006 CPT0304120006.WholeExome.RP-1303.bam 21501451261 BAM submitted_aligned CPTAC3 90412e42-0440-4770-a15f-f3872d64cc99 65c1607b8f367d3cb1f7376bf0ec723f {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04079.WXS.T.hg38 C3L-04079 LSCC WXS tumor CPT0304120006 1acb4845-2e95-438b-95ad-2598b8dce7e7_wxs_gdc_realn.bam 30301531678 BAM harmonized CPTAC3 5c8e9206-0fcb-4ee9-b307-348ea274d832 230b05d50dd8703af55cebc526b8e4d5 {"aliquot_tag": "ALQ_8dfa62eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04080.MethArray.Green.A C3L-04080 PDA Methylation_Array tissue_normal CPT0221490007 203561450020_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 39dc82b2-b443-4cda-848c-3dc8cbbfab62 13b79c61f385fef33e5fb65a77052fa2 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.MethArray.Green.T C3L-04080 PDA Methylation_Array tumor CPT0221470008 203273630261_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ab96bb4a-8fa6-4514-ab1c-b9ed1b4337b8 b879e5649ce9bf8bd270acc73411e13a {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.MethArray.Red.A C3L-04080 PDA Methylation_Array tissue_normal CPT0221490007 203561450020_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 2fca1053-94bd-489b-950b-e8c9fbfd9194 f645d117cd1354b217188c925751a327 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.MethArray.Red.T C3L-04080 PDA Methylation_Array tumor CPT0221470008 203273630261_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 50f6e9a1-aa44-4697-9233-4617e0350021 726083af8d6b9e0e3604a661d3936c60 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.miRNA-Seq.A.hg38 C3L-04080 PDA miRNA-Seq tissue_normal CPT0221490010 094aadcf-5abf-48d8-aad6-533cd9296b3d_mirnaseq_gdc_realn.bam 255143705 BAM harmonized CPTAC3 83943e09-8a6c-41d3-ac94-0e34972c0d4c fd2d8b1dc855d3a36b054bd3aa286f3b {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.miRNA-Seq.S12_L004_R1.T C3L-04080 PDA miRNA-Seq tumor CPT0221470011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCAACA_S12_L004_R1_001.unaln.bam 189077676 BAM S12_L004_R1 submitted_unaligned CPTAC3 b298ddda-8e4d-4a76-922e-d803ce536e37 1464be38a10c189b5d7da236ee3fd3bd {"aliquot_tag": "ALQ_95cee453", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.miRNA-Seq.S29_L003_R1.A C3L-04080 PDA miRNA-Seq tissue_normal CPT0221490010 190813_UNC32-K00270_0196_AH5MCWBBXY_TCCCGA_S29_L003_R1_001.unaln.bam 213020067 BAM S29_L003_R1 submitted_unaligned CPTAC3 abe4335f-51f3-4534-8be0-deca4bb6f134 ff7a400a39cb5e500ba941976aaab390 {"aliquot_tag": "ALQ_5df96aa4", "sample": "S29", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.miRNA-Seq.T.hg38 C3L-04080 PDA miRNA-Seq tumor CPT0221470011 9ae4c3a9-e9eb-419f-a055-6538f207f462_mirnaseq_gdc_realn.bam 214863179 BAM harmonized CPTAC3 635e172d-18d9-473e-959a-577d893346b6 b003cc195c404289c83289aab3f0b728 {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.RNA-Seq.chimeric.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.chimeric.gdc_realn.bam 38392959 BAM chimeric harmonized CPTAC3 ba69042a-fcb6-4921-9137-f2455a62bb39 843b48005ba0d0df44be43e705c737a4 {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.RNA-Seq.chimeric.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.chimeric.gdc_realn.bam 30603819 BAM chimeric harmonized CPTAC3 11a60ad1-3e66-42ff-bc59-aa30f5d6a3e8 3049f9240f414d8b747b3a6c9824fb4e {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.RNA-Seq.genomic.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.genomic.gdc_realn.bam 8703626542 BAM genomic harmonized CPTAC3 88b1081e-3768-4e49-af2c-636230c7cb69 794e99f424e5661f7515c524fff13e10 {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.RNA-Seq.genomic.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.genomic.gdc_realn.bam 8856270179 BAM genomic harmonized CPTAC3 f957a6b9-0f04-4b38-9f6c-7f98e77281c8 db7bfab5d9ca470e05c766992cd756c4 {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.RNA-Seq.S16_L004_R1.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R1_001.fastq.gz 4096443371 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 0bafbbc4-a8fd-4a3b-b252-3adac644fe60 720f5a85c13f0ef0270aa9010c11ce0b {"aliquot_tag": "ALQ_5df96aa4", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.RNA-Seq.S16_L004_R2.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R2_001.fastq.gz 4600184115 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 8567f306-f3e7-441d-aca0-38432ccfeb16 28548d4fc41ff1aa9d281ff173feb308 {"aliquot_tag": "ALQ_5df96aa4", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.RNA-Seq.S9_L003_R1.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4051178418 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 87c9b79e-abdb-40ab-b747-52765ddf30d7 79f02f3c5757a0d80e251768612598af {"aliquot_tag": "ALQ_95cee453", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.RNA-Seq.S9_L003_R2.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4511095235 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 ddeb1c1d-2624-46a6-8f66-d435d4c37f01 0402758b3fe05c423de4103eb3da6909 {"aliquot_tag": "ALQ_95cee453", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.RNA-Seq.transcriptome.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.transcriptome.gdc_realn.bam 9510226870 BAM transcriptome harmonized CPTAC3 f79a02b1-c904-46d6-bd0b-e4cbb7fbd62d 24f61ee6764019bb116f31862495d928 {"aliquot_tag": "ALQ_5df96aa4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.RNA-Seq.transcriptome.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.transcriptome.gdc_realn.bam 11400731575 BAM transcriptome harmonized CPTAC3 cd95a27b-69e9-499c-a8d8-1f5d35e1cd56 5d5cda7ff2b481dde7c694a9fc359e27 {"aliquot_tag": "ALQ_95cee453", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.Targeted.T C3L-04080 PDA Targeted_Sequencing tumor CPT0221470008 CPT0221470008.CustomSelection.RP-1303.PDO-18786.bam 6029346310 BAM submitted_aligned CPTAC3 bb02c205-ca71-418f-881c-e4d396be8b6b ae6c8aa5201e57b0fd72d2e906b51e02 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.Targeted.T.hg38 C3L-04080 PDA Targeted_Sequencing tumor CPT0221470008 f5c201b6-81e1-4e77-af6b-368926a95177_targetedsequencing_gdc_realn.bam 8367601459 BAM harmonized CPTAC3 066c9cc2-ed3e-4dd7-85c2-14e374eb4c35 da128577696e035233a2c548eb3b793c {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.WGS.N C3L-04080 PDA WGS blood_normal CPT0220550002 CPT0220550002.WholeGenome.RP-1303.bam 60513911882 BAM submitted_aligned CPTAC3 a76b12cc-7198-479d-960b-1cb14aa3e853 6930ae17acb8773dff6f77c7331f8121 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04080.WGS.N.hg38 C3L-04080 PDA WGS blood_normal CPT0220550002 03f3fbda-bbd7-4649-b677-7e8fcbbacb5b_wgs_gdc_realn.bam 88324086087 BAM harmonized CPTAC3 68ab3e9a-bd37-44be-8133-99d381095699 3e85d68d3924f671bb74108617a9a343 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04080.WGS.T C3L-04080 PDA WGS tumor CPT0221470008 CPT0221470008.WholeGenome.RP-1303.bam 61227961897 BAM submitted_aligned CPTAC3 3a63cc50-e2fa-4a8f-a596-812af022df0b 1ab69c54f7a087d360e022e863732e74 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.WGS.T.hg38 C3L-04080 PDA WGS tumor CPT0221470008 f5c201b6-81e1-4e77-af6b-368926a95177_wgs_gdc_realn.bam 90856548819 BAM harmonized CPTAC3 fd0a5edf-f331-4563-818d-060962d79803 982e2188fe1b6e7f73a9456a95776e1d {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.WXS.A C3L-04080 PDA WXS tissue_normal CPT0221490007 CPT0221490007.WholeExome.RP-1303.bam 32327370448 BAM submitted_aligned CPTAC3 fcf34ca5-1cb8-4822-a2b2-6e38b06d9bca 6c9cbd05c71021cce2968e73c453af09 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.WXS.A.hg38 C3L-04080 PDA WXS tissue_normal CPT0221490007 09b6c719-e037-48c6-b430-bd8e8c2f9c77_wxs_gdc_realn.bam 44003296021 BAM harmonized CPTAC3 56daac1c-6311-42ee-9a1e-b012a61be775 39e0cd59eb12ba6ab7fb7a32f034cbc9 {"aliquot_tag": "ALQ_da86ce46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04080.WXS.N C3L-04080 PDA WXS blood_normal CPT0220550002 CPT0220550002.WholeExome.RP-1303.bam 25514730002 BAM submitted_aligned CPTAC3 39850be6-0dda-49a2-af6d-95f02e8c9358 2cbfcb02b5983aca114164d9074ebdf0 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04080.WXS.N.hg38 C3L-04080 PDA WXS blood_normal CPT0220550002 03f3fbda-bbd7-4649-b677-7e8fcbbacb5b_wxs_gdc_realn.bam 35369246800 BAM harmonized CPTAC3 fc949e80-7df5-4e0f-9f54-de1f5e5fe540 a4eb6b351f4d2322fde9aa213c2c0478 {"aliquot_tag": "ALQ_2370fd9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04080.WXS.T C3L-04080 PDA WXS tumor CPT0221470008 CPT0221470008.WholeExome.RP-1303.bam 47172105321 BAM submitted_aligned CPTAC3 09f34bb3-1e73-4f2b-a2da-b2becaa38d80 8c52472f19d82a2677193c31d09df2b3 {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04080.WXS.T.hg38 C3L-04080 PDA WXS tumor CPT0221470008 f5c201b6-81e1-4e77-af6b-368926a95177_wxs_gdc_realn.bam 65780362684 BAM harmonized CPTAC3 2a898e06-4d61-457a-ba5d-9e2bebc660e7 70845f17c9e8a631584138cf1670bd3f {"aliquot_tag": "ALQ_f5096db6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04081.MethArray.Green.T C3L-04081 GBM Methylation_Array tumor CPT0265510008 205555390176_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 14cbae22-de8f-432f-a921-b32f66189665 a75b982b15c57dd5f174dd2a6e61f59e {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.MethArray.Red.T C3L-04081 GBM Methylation_Array tumor CPT0265510008 205555390176_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 44ba9c0b-f969-4a64-93ad-bd193b5365e0 6f981db1716d67b730ebb89f62751fa1 {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.miRNA-Seq.S33_L003_R1.T C3L-04081 GBM miRNA-Seq tumor CPT0265510011 210817_UNC31-K00269_0302_AHLCTHBBXY_TAATCG_S33_L003_R1_001.unaln.bam 208478653 BAM S33_L003_R1 submitted_unaligned CPTAC3 dce94583-521c-459d-b529-45c5971da228 67738811b28cfbe1b345975e70dc2773 {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.miRNA-Seq.S34_L005_R1.T C3L-04081 GBM miRNA-Seq tumor CPT0265510011 210702_UNC32-K00270_0289_AHKJ22BBXY_TAATCG_S34_L005_R1_001.unaln.bam 326214186 BAM S34_L005_R1 submitted_unaligned CPTAC3 ab3f233e-2bb2-484a-92b2-0852ad5a4bf2 e00a1125777ac8b88a5561714faf3bef {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.miRNA-Seq.T.hg38 C3L-04081 GBM miRNA-Seq tumor CPT0265510011 ae7846ed-07bf-446d-a1ec-b3558f1b8edb_mirnaseq_gdc_realn.bam 599207791 BAM harmonized CPTAC3 775d25ac-60a2-4e9d-87b8-ff9a7b023eb3 b1149dfafffc975c671e3585db74acae {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.RNA-Seq.chimeric.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.chimeric.gdc_realn.bam 207123557 BAM chimeric harmonized CPTAC3 fc9fffa1-0e7f-47f9-a0d3-e18f1b5c61fc 69248f743af7ee71882dab5ccde875ff {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.RNA-Seq.genomic.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.genomic.gdc_realn.bam 9151750057 BAM genomic harmonized CPTAC3 fc058a02-e82d-4807-864d-b429c8fbf3d5 71cd3ccece273006ec04e89ad0d392ef {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.RNA-Seq.S19_L005_R1.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 ff00dd51-d902-4563-b623-786e9f78aaf5 b56929c00e32fc2b8213b95e39cf9ea6 {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.RNA-Seq.S19_L005_R2.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R2_001.fastq.gz 4509949652 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 bdef277c-4632-450b-8030-037e3dbe8b32 93f264f4c774516474e281836bb46804 {"aliquot_tag": "ALQ_a1d7e8bf", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.RNA-Seq.transcriptome.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.transcriptome.gdc_realn.bam 10489874222 BAM transcriptome harmonized CPTAC3 4b684e92-ed7f-48e8-803e-6a9ed1fcdeea 3f7bfd94f917b19f7fe57a9a7d2bc976 {"aliquot_tag": "ALQ_a1d7e8bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.WGS.N C3L-04081 GBM WGS blood_normal CPT0264060002 CPT0264060002.WholeGenome.RP-2158.bam 22559972260 BAM submitted_aligned CPTAC3 2f67faeb-027b-43ce-b000-3866c6ebf473 2914847c230e8533c55181bfcf72f572 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04081.WGS.N.hg38 C3L-04081 GBM WGS blood_normal CPT0264060002 e6b94726-509a-4613-8525-6ea79747b2f9_wgs_gdc_realn.bam 65969932698 BAM harmonized CPTAC3 4ad311e9-01c5-464a-8d6c-40f40c331c19 d944222c06001c5ea0ac874b595d0fd8 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04081.WGS.T C3L-04081 GBM WGS tumor CPT0265510008 CPT0265510008.WholeGenome.RP-2158.bam 25514113575 BAM submitted_aligned CPTAC3 e58c7501-6b0f-47d9-a0d9-fa72b6e25f39 c5eee9b9026866fe029bb2b94e51aeef {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.WGS.T.hg38 C3L-04081 GBM WGS tumor CPT0265510008 fef12b13-bc4b-49fe-8975-9e7b25380154_wgs_gdc_realn.bam 73190033773 BAM harmonized CPTAC3 c8e3e5a9-2798-4125-a0f8-a84d2d5bb653 b2cb2fb5dfc7c5c380b7a34f0d6b8d1a {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.WXS.N C3L-04081 GBM WXS blood_normal CPT0264060002 CPT0264060002.WholeExome.RP-1303.bam 23994779930 BAM submitted_aligned CPTAC3 df9455fb-b575-4002-9e2d-d7fb09fbebaa a92a657f8586eda0e3c8307992dc5c12 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04081.WXS.N.hg38 C3L-04081 GBM WXS blood_normal CPT0264060002 e6b94726-509a-4613-8525-6ea79747b2f9_wxs_gdc_realn.bam 33048251483 BAM harmonized CPTAC3 06d346ea-40cc-43fc-ab1e-a6e54c666c36 246051120849631656b676c93176b0b9 {"aliquot_tag": "ALQ_655fce53", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-04081.WXS.T C3L-04081 GBM WXS tumor CPT0265510008 CPT0265510008.WholeExome.RP-1303.bam 27007068396 BAM submitted_aligned CPTAC3 2b3b6248-df80-4767-9b6a-3d11bd2cc5b4 c5137deb9a910ed35a6adf70726cd7de {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04081.WXS.T.hg38 C3L-04081 GBM WXS tumor CPT0265510008 fef12b13-bc4b-49fe-8975-9e7b25380154_wxs_gdc_realn.bam 37176913565 BAM harmonized CPTAC3 4f239bb8-5070-4cf0-b14c-599bbb7bfd94 89fc869a424e1545bfe3cc2242445a6f {"aliquot_tag": "ALQ_c110615a", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-04082.MethArray.Green.T C3L-04082 GBM Methylation_Array tumor CPT0265570007 204372030014_R01C01_Grn.idat 13677895 IDAT Green NA CPTAC3 c0349bd7-c6ee-4508-8cac-daf50e543949 0de21f3b99742909b3ca43265dca3efe {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.MethArray.Red.T C3L-04082 GBM Methylation_Array tumor CPT0265570007 204372030014_R01C01_Red.idat 13677895 IDAT Red NA CPTAC3 7ce1f779-23e3-4319-b2a5-1c7a1a73ecd7 a2c952542f194e3b0fd50292e0dd14b4 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.miRNA-Seq.S28_L002_R1.T C3L-04082 GBM miRNA-Seq tumor CPT0265570010 200403_UNC31-K00269_0274_AHCF7GBBXY_TGACCA_S28_L002_R1_001.unaln.bam 233816272 BAM S28_L002_R1 submitted_unaligned CPTAC3 4f037c4a-b4be-4662-ad7b-952b81324e1a 93ed3305db8a814daad8117ffc70074b {"aliquot_tag": "ALQ_59902d89", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.miRNA-Seq.T.hg38 C3L-04082 GBM miRNA-Seq tumor CPT0265570010 015db4d7-81d1-47e6-b5ab-da7771bbbb55_mirnaseq_gdc_realn.bam 259069258 BAM harmonized CPTAC3 f3af9903-c085-4e9e-b733-10b15ef81da3 2f9a7e3cd5fec7f69db441e8e590a14e {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.RNA-Seq.chimeric.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.chimeric.gdc_realn.bam 231785209 BAM chimeric harmonized CPTAC3 6a97843b-826f-487d-adb1-ae0072c4373c f8d61f144e349ad9be792d884281152d {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.RNA-Seq.genomic.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.genomic.gdc_realn.bam 9309720845 BAM genomic harmonized CPTAC3 9846a55f-d32b-46a6-81dd-5844f50738d7 3f306c7d57030d913fac129c720d3226 {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.RNA-Seq.S8_L007_R1.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R1_001.fastq.gz 4248024679 FASTQ S8_L007_R1 submitted_unaligned CPTAC3 ec4c1755-cc9a-44e5-a27e-f2dfb20759aa 605ddfaf30860a2600b04703541a49ab {"aliquot_tag": "ALQ_59902d89", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.RNA-Seq.S8_L007_R2.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R2_001.fastq.gz 4598010602 FASTQ S8_L007_R2 submitted_unaligned CPTAC3 5f246b0c-555f-40f6-8164-cb5299028ec0 e98b9ec3f4d86e85e2ade54f3dd4bb39 {"aliquot_tag": "ALQ_59902d89", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.RNA-Seq.transcriptome.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.transcriptome.gdc_realn.bam 9887475281 BAM transcriptome harmonized CPTAC3 10b131ca-20b2-47cb-aad1-5d1bdc2f1522 410bbb71fa55e8a206c0016ad73a9f5b {"aliquot_tag": "ALQ_59902d89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.WGS.N C3L-04082 GBM WGS blood_normal CPT0264080002 CPT0264080002.WholeGenome.RP-2158.bam 23128977215 BAM submitted_aligned CPTAC3 1f9d4fab-3a95-41ba-8cb8-70de60482272 2d7532abc3f9ac71521f5f2dad90b3bd {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04082.WGS.N.hg38 C3L-04082 GBM WGS blood_normal CPT0264080002 bb8cccdb-ed81-4577-985c-bb7a2fa25615_wgs_gdc_realn.bam 67786654929 BAM harmonized CPTAC3 59832d48-68b8-4628-8d69-7508a94d58a8 79168dccb6f2af24bc16916028e034d9 {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04082.WGS.T C3L-04082 GBM WGS tumor CPT0265570007 CPT0265570007.WholeGenome.RP-2158.bam 30408005969 BAM submitted_aligned CPTAC3 1a83e225-07c0-4a15-a08f-b287f7e00006 2b81437e81e5be3192e476f67c9c4333 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.WGS.T.hg38 C3L-04082 GBM WGS tumor CPT0265570007 55106539-3a36-4192-9e5c-0e548beee398_wgs_gdc_realn.bam 88159863449 BAM harmonized CPTAC3 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 c0769e69ca889708537eb90cecbe40c2 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.WXS.N C3L-04082 GBM WXS blood_normal CPT0264080002 CPT0264080002.WholeExome.RP-1303.bam 24080895568 BAM submitted_aligned CPTAC3 3da9c6d0-81b1-4747-ab34-b6204f43eea0 0d32d45408d0d227f0b3541c0aaf428c {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04082.WXS.N.hg38 C3L-04082 GBM WXS blood_normal CPT0264080002 bb8cccdb-ed81-4577-985c-bb7a2fa25615_wxs_gdc_realn.bam 33980020985 BAM harmonized CPTAC3 5d9f84bd-a6e9-4678-99b9-b92e116bd990 1513532dcc388dc8b01fe6d4998e9e25 {"aliquot_tag": "ALQ_da6f7032", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04082.WXS.T C3L-04082 GBM WXS tumor CPT0265570007 CPT0265570007.WholeExome.RP-1303.bam 18573057471 BAM submitted_aligned CPTAC3 defd4a05-6b63-4c8e-9b64-de81577bc0f0 2fd311a796471a1d1bff2061e41b8d19 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04082.WXS.T.hg38 C3L-04082 GBM WXS tumor CPT0265570007 55106539-3a36-4192-9e5c-0e548beee398_wxs_gdc_realn.bam 26661775311 BAM harmonized CPTAC3 f87237fb-ad70-43ed-af55-79837baed1a4 a13a64916d44f7eae4a95607c38654a3 {"aliquot_tag": "ALQ_deef896b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.MethArray.Green.T C3L-04083 GBM Methylation_Array tumor CPT0242430007 204372030024_R08C01_Grn.idat 13677905 IDAT Green NA CPTAC3 aefb1fd3-b012-4af5-a174-0084762eb9f2 7a8b9c06df63235b354e6861b1db3152 {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.MethArray.Red.T C3L-04083 GBM Methylation_Array tumor CPT0242430007 204372030024_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 990a1e0b-bb2d-41e6-b1c2-aa8c00460311 c8593d64049387a57f6528d91afe6827 {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.miRNA-Seq.S38_L002_R1.T C3L-04083 GBM miRNA-Seq tumor CPT0242430010 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 227407220 BAM S38_L002_R1 submitted_unaligned CPTAC3 2a9500a6-03a6-4a52-bbc2-dcfe47abd5ea 4bf226a8a178ef2f1476cf8354420b1a {"aliquot_tag": "ALQ_e0ce611f", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.miRNA-Seq.T.hg38 C3L-04083 GBM miRNA-Seq tumor CPT0242430010 da4f8b93-3997-4daa-8342-c2165079fd1d_mirnaseq_gdc_realn.bam 262845496 BAM harmonized CPTAC3 3160a1e1-b57a-4f65-b463-91727f0bc175 290423ff6be7e16227db692c7d2fdb46 {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.RNA-Seq.chimeric.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.chimeric.gdc_realn.bam 402539192 BAM chimeric harmonized CPTAC3 fe9c1a7c-0dba-42c5-8051-b9a8cfc62d6a 43907b210b22decd85f7bf125b11606c {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.RNA-Seq.genomic.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.genomic.gdc_realn.bam 8394501462 BAM genomic harmonized CPTAC3 10d6a6ef-5cfa-4b8e-a892-3aae7014dbaf e1568dc6922a89720902141821c45f88 {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.RNA-Seq.S6_L002_R1.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 5549791b-5875-433f-a85e-980a44bb3310 d2169d9407798432f166af4ed8904f9e {"aliquot_tag": "ALQ_e0ce611f", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.RNA-Seq.S6_L002_R2.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 21ee205d-ff01-4791-82f7-e4b0f801a099 1d928d05498a22dacbb9eeeb2cdd13e1 {"aliquot_tag": "ALQ_e0ce611f", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.RNA-Seq.transcriptome.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.transcriptome.gdc_realn.bam 8410271845 BAM transcriptome harmonized CPTAC3 00cc777f-b56e-4ac1-9309-d7a5c8f2019e d5ee9266fc85fbc2047d8228f589cac2 {"aliquot_tag": "ALQ_e0ce611f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.WGS.N C3L-04083 GBM WGS blood_normal CPT0243420002 CPT0243420002.WholeGenome.RP-2158.bam 25713668352 BAM submitted_aligned CPTAC3 a9c2a88b-947b-4b4e-94b1-6b877ae9b7c6 3429b00db2bbed7bdfaaa7e8f1d236a0 {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04083.WGS.N.hg38 C3L-04083 GBM WGS blood_normal CPT0243420002 d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wgs_gdc_realn.bam 76815969296 BAM harmonized CPTAC3 8f0a473f-e05f-4b30-988f-a4456e458e19 816c80c4fcb03e117f17ba7fb395110d {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04083.WGS.T C3L-04083 GBM WGS tumor CPT0242430007 CPT0242430007.WholeGenome.RP-2158.bam 24095585977 BAM submitted_aligned CPTAC3 058118a9-ec62-4f35-9758-e4701373868f c757a848bb3e2b6aa19a896e5ed11456 {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.WGS.T.hg38 C3L-04083 GBM WGS tumor CPT0242430007 c66bf4aa-16ce-43f4-a353-8244577bf31a_wgs_gdc_realn.bam 71762265713 BAM harmonized CPTAC3 a76bbc4e-73d6-452c-8993-b8b3c830587b 1728f954055f5e7fdb0ae207e65bad6f {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.WXS.N C3L-04083 GBM WXS blood_normal CPT0243420002 CPT0243420002.WholeExome.RP-1303.bam 21584884315 BAM submitted_aligned CPTAC3 1bf5e1d1-526e-4246-868c-4999e8ed252f a7d1119d54a0eff705d7b935ec25b258 {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04083.WXS.N.hg38 C3L-04083 GBM WXS blood_normal CPT0243420002 d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wxs_gdc_realn.bam 29729626446 BAM harmonized CPTAC3 cc4f43a8-3da1-4df6-94d3-48d461e679a2 bc5a779b219d4a2dbb674c610c8b9ebb {"aliquot_tag": "ALQ_8ccc1376", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04083.WXS.T C3L-04083 GBM WXS tumor CPT0242430007 CPT0242430007.WholeExome.RP-1303.bam 19954045723 BAM submitted_aligned CPTAC3 c90b0f71-da42-434e-a69f-a96bfd274fdf aefbbdf3edfc997955e1b2188fd72a5a {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04083.WXS.T.hg38 C3L-04083 GBM WXS tumor CPT0242430007 c66bf4aa-16ce-43f4-a353-8244577bf31a_wxs_gdc_realn.bam 28832541743 BAM harmonized CPTAC3 502835bd-e7db-4616-8f28-dca0053b4397 317b22984f7d83e4196a68741396897b {"aliquot_tag": "ALQ_67b1c5fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04084.MethArray.Green.T C3L-04084 GBM Methylation_Array tumor CPT0217100006 203219670147_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 fe040214-39c3-434a-85e5-db58d56ddcfd 28f4757d058e3e36f048149d4ac17ac6 {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.MethArray.Red.T C3L-04084 GBM Methylation_Array tumor CPT0217100006 203219670147_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 3e05fac8-22b3-46b3-b9ef-97bf372abed8 7809b1507c35fcbe94470091be266c52 {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.miRNA-Seq.S2_L003_R1.T C3L-04084 GBM miRNA-Seq tumor CPT0217100013 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L003_R1_001.unaln.bam 203306244 BAM S2_L003_R1 submitted_unaligned CPTAC3 cdf031a1-492b-44b0-a821-90f969c5c7df f00c4ab30e4c829c68ec340b255c1288 {"aliquot_tag": "ALQ_7472fa05", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.miRNA-Seq.T.hg38 C3L-04084 GBM miRNA-Seq tumor CPT0217100013 7b3b86b2-a890-476c-990e-afb4e4770c4c_mirnaseq_gdc_realn.bam 225585539 BAM harmonized CPTAC3 6643eb79-4efe-4a2f-abae-80a5a2905cd4 3d99b39299d52e1384c8fda401e7cfde {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.RNA-Seq.chimeric.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.chimeric.gdc_realn.bam 121646974 BAM chimeric harmonized CPTAC3 7260a314-fd26-4e17-b40e-7a76ad57de65 9b2ac114eae200551428de36aa4c22e3 {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.RNA-Seq.genomic.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.genomic.gdc_realn.bam 10675176544 BAM genomic harmonized CPTAC3 d6bcec0f-dec3-4f56-ac0b-ff88b1febf44 4a3eec71e5114318e2ee73ee4f80912f {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.RNA-Seq.S11_L008_R1.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ S11_L008_R1 submitted_unaligned CPTAC3 b2c130ea-b93b-4fa3-9d65-ec453849df62 751ff660655b9ad79c5664a87c4a0e07 {"aliquot_tag": "ALQ_7472fa05", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.RNA-Seq.S11_L008_R2.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ S11_L008_R2 submitted_unaligned CPTAC3 5862426d-2acc-420a-92be-9a0bbfca35d4 b3a128b811cd565b2923670000755e41 {"aliquot_tag": "ALQ_7472fa05", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.RNA-Seq.transcriptome.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.transcriptome.gdc_realn.bam 10461895759 BAM transcriptome harmonized CPTAC3 16e520e0-301b-42d5-b393-3269c1d9a7f6 72a6716a45eae4dc38fa7c4fe6535154 {"aliquot_tag": "ALQ_7472fa05", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.WGS.N C3L-04084 GBM WGS blood_normal CPT0218020002 CPT0218020002.WholeGenome.RP-1303.bam 53676724410 BAM submitted_aligned CPTAC3 5682d807-fda5-4e8c-9a39-4ca8e38df754 5d37b4f1ef5e806bb294f9db4cb3992b {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04084.WGS.N.hg38 C3L-04084 GBM WGS blood_normal CPT0218020002 2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wgs_gdc_realn.bam 77845598765 BAM harmonized CPTAC3 5b481775-6b55-4ac6-811e-30d61f8628a9 2350d9b4d3c8f2f70a13e12b406e96e8 {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04084.WGS.T C3L-04084 GBM WGS tumor CPT0217100006 CPT0217100006.WholeGenome.RP-1303.bam 60903190480 BAM submitted_aligned CPTAC3 6b568706-c1f6-47aa-a0da-73d9c6709f98 bfa2a708c8554eb1dffdecbd2579bc4c {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.WGS.T.hg38 C3L-04084 GBM WGS tumor CPT0217100006 a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wgs_gdc_realn.bam 89876705074 BAM harmonized CPTAC3 9b387bac-d0d0-477d-a0d2-b93d22100e1a 4ae98e1aafd7d91843db1005c052db7c {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.WXS.N C3L-04084 GBM WXS blood_normal CPT0218020002 CPT0218020002.WholeExome.RP-1303.bam 26256467143 BAM submitted_aligned CPTAC3 90cf816c-31bb-4c98-a055-e9a16bd34df3 5f1d8dbd894d9a57e951b80656d52fbd {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04084.WXS.N.hg38 C3L-04084 GBM WXS blood_normal CPT0218020002 2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wxs_gdc_realn.bam 35870148383 BAM harmonized CPTAC3 34b6e37f-77df-4184-a9fe-f4b498986b51 93a16266d97e2579bf16f3c8cbb466f9 {"aliquot_tag": "ALQ_5dba0bfe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04084.WXS.T C3L-04084 GBM WXS tumor CPT0217100006 CPT0217100006.WholeExome.RP-1303.bam 28674645437 BAM submitted_aligned CPTAC3 dd388923-0a5f-417f-992b-30d6e0352443 2be82f27621dfe6094cfdffef3fced13 {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04084.WXS.T.hg38 C3L-04084 GBM WXS tumor CPT0217100006 a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wxs_gdc_realn.bam 39609281734 BAM harmonized CPTAC3 25e63555-2fda-402c-b370-947e6c99f146 2abdb9511918f745956ec7c62054f74c {"aliquot_tag": "ALQ_1d033fcb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04085.MethArray.Green.T C3L-04085 GBM Methylation_Array tumor CPT0242520007 204930630114_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8b1a04b2-f216-44d9-bc85-82d009c292e0 b160754ddb0839d3b68b643433caf052 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.MethArray.Red.T C3L-04085 GBM Methylation_Array tumor CPT0242520007 204930630114_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 fd7a104b-1630-45e7-a680-5b835d10aa52 529806c28516285125769712821d4480 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.miRNA-Seq.S32_L007_R1.T C3L-04085 GBM miRNA-Seq tumor CPT0242520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GGCTAC_S32_L007_R1_001.unaln.bam 287761601 BAM S32_L007_R1 submitted_unaligned CPTAC3 bc6d5dfb-bb31-45ae-8b0e-2a08360a5cd7 cb6a11627511330be2551dabf94fb84e {"aliquot_tag": "ALQ_16f29b0a", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.miRNA-Seq.T.hg38 C3L-04085 GBM miRNA-Seq tumor CPT0242520010 7c66c6f6-c15c-4849-890e-cfc7f177969b_mirnaseq_gdc_realn.bam 323431402 BAM harmonized CPTAC3 9ec75e7f-e177-4d27-96ab-894f82b7dc3f e0d5830e0ee057de9f88cec76d76e0ed {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.RNA-Seq.chimeric.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.chimeric.gdc_realn.bam 604928154 BAM chimeric harmonized CPTAC3 fb34a7da-4c56-495e-86b0-96f88aae704c c5463a49eb963a9bb5373aae1c5ca873 {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.genomic.gdc_realn.bam 9281811898 BAM genomic harmonized CPTAC3 0374b38f-c17b-4b24-87cf-386ea14434da 9a4e6a7e347b635c4d66bcfd2a805436 {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.RNA-Seq.S3_L001_R1.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 25f5bea4-fef4-4378-9ccb-8a5befebf88a f7da59772143538816e2c5dd6b9d4b60 {"aliquot_tag": "ALQ_16f29b0a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.RNA-Seq.S3_L001_R2.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 f0486b67-d5ff-4ae5-97ff-218d95b1e496 d94ec5a4807f86bac4a3cf58aea162d1 {"aliquot_tag": "ALQ_16f29b0a", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.RNA-Seq.transcriptome.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.transcriptome.gdc_realn.bam 10042751410 BAM transcriptome harmonized CPTAC3 355f8bf9-8151-4d8d-b14d-8c15fec13215 2d945bd87aec981400240cda19f79609 {"aliquot_tag": "ALQ_16f29b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.WGS.N C3L-04085 GBM WGS blood_normal CPT0243440002 CPT0243440002.WholeGenome.RP-2158.bam 22966209999 BAM submitted_aligned CPTAC3 01ee3659-ba85-44ef-b3f6-0af789f0ac5f 92e7683a106258351e6cd8a9dd07ef23 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04085.WGS.N.hg38 C3L-04085 GBM WGS blood_normal CPT0243440002 a70f4fe0-29b6-40d6-877a-4754cb2270cf_wgs_gdc_realn.bam 68911988155 BAM harmonized CPTAC3 71b6faf7-a10b-4bc5-b997-e075c6806937 91f5bcc634a50fb8186a858baaf7e123 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04085.WGS.T C3L-04085 GBM WGS tumor CPT0242520007 CPT0242520007.WholeGenome.RP-2158.bam 22101856002 BAM submitted_aligned CPTAC3 fc6a67f7-5b0c-428b-875e-8a1443af63f5 799fdc32c48861a960360077ea6e8a22 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.WGS.T.hg38 C3L-04085 GBM WGS tumor CPT0242520007 c775700c-9771-4aba-ae72-32627a2c70e2_wgs_gdc_realn.bam 67958029587 BAM harmonized CPTAC3 7c2f1712-0980-4d6f-9dda-6c10a459d864 b95a33d3d9826ef351c7f1bc71b4f52b {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.WXS.N C3L-04085 GBM WXS blood_normal CPT0243440002 CPT0243440002.WholeExome.RP-1303.bam 21928962196 BAM submitted_aligned CPTAC3 1f09d693-58d4-4604-920f-69d7385f0be8 d747d50fe35cbb81a70c1d991424d8d7 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04085.WXS.N.hg38 C3L-04085 GBM WXS blood_normal CPT0243440002 a70f4fe0-29b6-40d6-877a-4754cb2270cf_wxs_gdc_realn.bam 30775678379 BAM harmonized CPTAC3 2d44c795-adb4-4675-be59-17570b206f0c 4d5fe6d4ab923939413809fe81413be2 {"aliquot_tag": "ALQ_38ce6d6", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-04085.WXS.T C3L-04085 GBM WXS tumor CPT0242520007 CPT0242520007.WholeExome.RP-1303.bam 26495108597 BAM submitted_aligned CPTAC3 ac44b834-57a0-4a5e-99aa-f58c500d1c8c bc2f83b05fcb8053703d3e909e52dfa6 {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04085.WXS.T.hg38 C3L-04085 GBM WXS tumor CPT0242520007 c775700c-9771-4aba-ae72-32627a2c70e2_wxs_gdc_realn.bam 35779081908 BAM harmonized CPTAC3 d2d7379c-8a42-42f2-90eb-2121d85516b5 e62855f87f97f3fe93d16988ef2b0e3f {"aliquot_tag": "ALQ_918d3fe8", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-04090.MethArray.Green.T C3L-04090 GBM Methylation_Array tumor CPT0265630007 204367400087_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2932c1e2-8908-4191-a617-94849275268c 467ed866460d854441fab8f05910ce57 {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.MethArray.Red.T C3L-04090 GBM Methylation_Array tumor CPT0265630007 204367400087_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 0d4bc648-2c5f-4a71-82ce-ae5448ed8ad4 eaa9a674df9a09f9016a41d052f87224 {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.miRNA-Seq.S29_L002_R1.T C3L-04090 GBM miRNA-Seq tumor CPT0265630010 200403_UNC31-K00269_0274_AHCF7GBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 229790346 BAM S29_L002_R1 submitted_unaligned CPTAC3 dd773231-83d5-4d0e-afd5-6827c0ab45cb db36cb210fbd2f57987234081afbf20a {"aliquot_tag": "ALQ_2a84f9e7", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.miRNA-Seq.T.hg38 C3L-04090 GBM miRNA-Seq tumor CPT0265630010 81f20c51-e19d-4cb4-a74d-59c4aff9a5c9_mirnaseq_gdc_realn.bam 259059313 BAM harmonized CPTAC3 4f77b53c-7b32-42b1-9ff3-eac29474ec55 3e27b38ed0164f9828a18096078178e1 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.RNA-Seq.chimeric.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.chimeric.gdc_realn.bam 427303355 BAM chimeric harmonized CPTAC3 dfe89388-1cd3-4df2-81ed-c9d9e8bfd5ff 0a1dd17a60be3f5c75e6705568b4d691 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.RNA-Seq.genomic.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.genomic.gdc_realn.bam 10698751629 BAM genomic harmonized CPTAC3 f0b47847-a2a9-47f5-834a-dade63f2d241 19bff7907bd66704524860b06d973696 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.RNA-Seq.S9_L008_R1.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R1_001.fastq.gz 4945213572 FASTQ S9_L008_R1 submitted_unaligned CPTAC3 9a8aec46-4acd-4c73-96c3-ab521a638114 a679c5c2f2ae92dd0b120c3a216ee245 {"aliquot_tag": "ALQ_2a84f9e7", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.RNA-Seq.S9_L008_R2.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R2_001.fastq.gz 5597226556 FASTQ S9_L008_R2 submitted_unaligned CPTAC3 c3e5d01b-6efa-4a68-9f27-d3d6955b01e5 6be22923c70e6dc8ca956f3c7cfef44f {"aliquot_tag": "ALQ_2a84f9e7", "sample": "S9", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.RNA-Seq.transcriptome.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.transcriptome.gdc_realn.bam 10939001948 BAM transcriptome harmonized CPTAC3 015180a3-5a78-4913-ad11-0495ed1110e6 81227cc660238edc29d819ac47dd5239 {"aliquot_tag": "ALQ_2a84f9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.WGS.N C3L-04090 GBM WGS blood_normal CPT0264100002 CPT0264100002.WholeGenome.RP-2158.bam 28096864252 BAM submitted_aligned CPTAC3 38c663ab-d41b-4605-80f4-21334e899a9f 0ede58443a662208c3128f3d3fa44a25 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04090.WGS.N.hg38 C3L-04090 GBM WGS blood_normal CPT0264100002 cd982953-0066-4729-91e5-ccf5800c6287_wgs_gdc_realn.bam 83572926292 BAM harmonized CPTAC3 b005d5ce-da55-4484-b85f-33250d2f2f93 9155a20fa7b7f69e4a5cb35558e35e29 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04090.WGS.T C3L-04090 GBM WGS tumor CPT0265630007 CPT0265630007.WholeGenome.RP-2158.bam 31570550494 BAM submitted_aligned CPTAC3 281321cf-ff95-40ef-973a-1cdd931c914e b9d1b2442da75249ab30e8c1d21ade6e {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.WGS.T.hg38 C3L-04090 GBM WGS tumor CPT0265630007 0dc0882f-2967-4268-afaa-eff7fa83e921_wgs_gdc_realn.bam 92533479255 BAM harmonized CPTAC3 c3ab0336-b7dc-4739-a99c-faf95f70764c abf299e827493c16910e60a9155625cf {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.WXS.N C3L-04090 GBM WXS blood_normal CPT0264100002 CPT0264100002.WholeExome.RP-1303.bam 24947982395 BAM submitted_aligned CPTAC3 f5750679-d8a2-4b5e-be9e-6663efc7225c f20065edb8cbf1f2003cbcebfb9afc98 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04090.WXS.N.hg38 C3L-04090 GBM WXS blood_normal CPT0264100002 cd982953-0066-4729-91e5-ccf5800c6287_wxs_gdc_realn.bam 34156625605 BAM harmonized CPTAC3 cb068c31-d894-43ba-b308-3b1f97d8c15e 7d93d13f61539407ea5f7bf969243955 {"aliquot_tag": "ALQ_2143e856", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04090.WXS.T C3L-04090 GBM WXS tumor CPT0265630007 CPT0265630007.WholeExome.RP-1303.bam 20161190594 BAM submitted_aligned CPTAC3 494ab4e9-c16b-4840-8abd-fd9e5e21cb99 56a9ee4207a1da6678ca47f27a7ba31d {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04090.WXS.T.hg38 C3L-04090 GBM WXS tumor CPT0265630007 0dc0882f-2967-4268-afaa-eff7fa83e921_wxs_gdc_realn.bam 28215868388 BAM harmonized CPTAC3 6b65e8bd-213a-4815-b2cc-ff4733cccf2d 6360c393021ab327fef4c8e3cff745fa {"aliquot_tag": "ALQ_adfb5d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04197.RNA-Seq.chimeric.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.chimeric.gdc_realn.bam 28742984 BAM chimeric harmonized CPTAC3 3de50244-c357-48dc-bc56-fef5441ae010 a126273bf229b5b6350f4005424ba4d4 {"aliquot_tag": "ALQ_edb17293", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04197.RNA-Seq.genomic.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.genomic.gdc_realn.bam 5643450925 BAM genomic harmonized CPTAC3 c589f2ed-5125-479b-9d56-42477dffc3ff bd68a5bd579463a5f89595eac493eadb {"aliquot_tag": "ALQ_edb17293", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04197.RNA-Seq.S84_R1.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R1_001.fastq.gz 3321276793 FASTQ S84_R1 submitted_unaligned CPTAC3 1b6ff914-fe0c-458a-8759-26b379dc0fcb aac3ed22a7febcc0680aa5022d714369 {"aliquot_tag": "ALQ_edb17293", "sample": "S84", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04197.RNA-Seq.S84_R2.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R2_001.fastq.gz 3565568028 FASTQ S84_R2 submitted_unaligned CPTAC3 74b58e38-46bc-4fa0-a7ec-53e2db01d100 75c59f5dfc41c749fb7dfd9ff3813614 {"aliquot_tag": "ALQ_edb17293", "sample": "S84", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04197.RNA-Seq.transcriptome.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.transcriptome.gdc_realn.bam 5222426068 BAM transcriptome harmonized CPTAC3 a66f1468-f513-4d72-97a6-6202472c60fa 3501f78b38a68d572367bbddf7cd622f {"aliquot_tag": "ALQ_edb17293", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04198.RNA-Seq.chimeric.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.chimeric.gdc_realn.bam 140328157 BAM chimeric harmonized CPTAC3 0cbcc20d-432f-4c7a-8667-de7225bc599f 717794acd9ba6e3778e9a4dd89a23c9e {"aliquot_tag": "ALQ_99dd1f57", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04198.RNA-Seq.genomic.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.genomic.gdc_realn.bam 7698687774 BAM genomic harmonized CPTAC3 300646ca-4d72-499a-b866-ff0143e2dd26 5164d976b32b91892140acb1c4ceb91a {"aliquot_tag": "ALQ_99dd1f57", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04198.RNA-Seq.S87_R1.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R1_001.fastq.gz 4073180584 FASTQ S87_R1 submitted_unaligned CPTAC3 5ffb7de9-8677-4ab5-8409-27c6315efe3c a82c58eb2c813eafc6213c2d5ec77c5d {"aliquot_tag": "ALQ_99dd1f57", "sample": "S87", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04198.RNA-Seq.S87_R2.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R2_001.fastq.gz 4170004731 FASTQ S87_R2 submitted_unaligned CPTAC3 d9fedabc-4000-44ca-a128-9c788b5c6184 c48a77aedda5269c495f0aa7d754f02e {"aliquot_tag": "ALQ_99dd1f57", "sample": "S87", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04198.RNA-Seq.transcriptome.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.transcriptome.gdc_realn.bam 4317461849 BAM transcriptome harmonized CPTAC3 223578e2-b602-4d09-b180-b203ab88b509 2125e97b1c5652b4f9f58c675199098e {"aliquot_tag": "ALQ_99dd1f57", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04199.RNA-Seq.chimeric.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.chimeric.gdc_realn.bam 158388587 BAM chimeric harmonized CPTAC3 1e9dc16f-295c-45f2-80c0-f94b0ccd10b8 120b46cabd67f6b989e78bedc9a80e11 {"aliquot_tag": "ALQ_d7a9e289", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04199.RNA-Seq.genomic.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.genomic.gdc_realn.bam 10544135703 BAM genomic harmonized CPTAC3 121f2ed1-cb2e-4d0f-ab7c-d2a0944dc821 edf8ffc8db15c48166a4c6c86acfacfd {"aliquot_tag": "ALQ_d7a9e289", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04199.RNA-Seq.S77_R1.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R1_001.fastq.gz 6773487889 FASTQ S77_R1 submitted_unaligned CPTAC3 412d9433-a40f-425b-a16b-ecd6ae4dccff ae54f8c762b3e3ea8b61bc4e83e57613 {"aliquot_tag": "ALQ_d7a9e289", "sample": "S77", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04199.RNA-Seq.S77_R2.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R2_001.fastq.gz 7054423596 FASTQ S77_R2 submitted_unaligned CPTAC3 77f0aee6-1661-4c2d-958f-16e073935dd2 8e89fade1183b3cbf362c7f71efb45a0 {"aliquot_tag": "ALQ_d7a9e289", "sample": "S77", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04199.RNA-Seq.transcriptome.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.transcriptome.gdc_realn.bam 7505462055 BAM transcriptome harmonized CPTAC3 93a2efe1-cb3e-4a5b-8372-bc036683ae3b 16285eb411786115f01b2703c1b43572 {"aliquot_tag": "ALQ_d7a9e289", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.MethArray.Green.T C3L-04213 GBM Methylation_Array tumor CPT0277180006 204367490030_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99a416e8-f01b-4505-9f64-75fdd5c86d5b 8d552955eeb20ee0366d8e04097d7738 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.MethArray.Red.T C3L-04213 GBM Methylation_Array tumor CPT0277180006 204367490030_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 61764414-eaf2-4995-aab3-6177e0ce485e 94c47d82a307a15054c123e533217b76 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.miRNA-Seq.S7_L001_R1.T C3L-04213 GBM miRNA-Seq tumor CPT0277180009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 247132876 BAM S7_L001_R1 submitted_unaligned CPTAC3 4a732346-4aee-42d0-80e9-32fe22a79b68 0110a279fa78eaf70cae0563b4113dcb {"aliquot_tag": "ALQ_7ba3601c", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.miRNA-Seq.T.hg38 C3L-04213 GBM miRNA-Seq tumor CPT0277180009 5bdfbd50-8f9c-4421-afae-ad61bea3cbf7_mirnaseq_gdc_realn.bam 273383199 BAM harmonized CPTAC3 5a233130-f032-4f93-a4aa-a587f6b89b81 c0e3a4caaea580aba239e59007b8ccd4 {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.RNA-Seq.chimeric.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.chimeric.gdc_realn.bam 31570461 BAM chimeric harmonized CPTAC3 d9c7557b-9617-49ee-a8f7-f87425833221 af4c79f805edfb612415d625e807534c {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.RNA-Seq.genomic.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.genomic.gdc_realn.bam 7552304278 BAM genomic harmonized CPTAC3 53267dff-af2f-45ce-b5f2-61859fc06cf6 4edb02f9dea24bf12c065d4a8a68ccc3 {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.RNA-Seq.S23_L006_R1.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 3a18317d-3520-42dc-8003-f9561853b8dc 37e5acf5c7f949bc8b179a366242afb5 {"aliquot_tag": "ALQ_7ba3601c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.RNA-Seq.S23_L006_R2.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 fb64ce39-84ad-40df-801d-f1e1146356a0 d5486d52ba6fbf1c59bf8f520c3cdb03 {"aliquot_tag": "ALQ_7ba3601c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.RNA-Seq.transcriptome.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.transcriptome.gdc_realn.bam 6018935824 BAM transcriptome harmonized CPTAC3 b0f1b70e-46b3-4348-a4c4-e40864f47f40 12a26609e103ecb39cdd3cfde63a32db {"aliquot_tag": "ALQ_7ba3601c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.WGS.N C3L-04213 GBM WGS blood_normal CPT0277280002 CPT0277280002.WholeGenome.RP-2158.bam 27307720953 BAM submitted_aligned CPTAC3 9016f6fc-f3f7-4ef3-b81e-f8d54cc931f2 abdded50a59683701393aed02d94942f {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04213.WGS.N.hg38 C3L-04213 GBM WGS blood_normal CPT0277280002 1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wgs_gdc_realn.bam 79615801627 BAM harmonized CPTAC3 e4a20d36-782a-4b14-a985-15b48497ff4e a3a5a591fff5a13d17e157b00ca7b40d {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04213.WGS.T C3L-04213 GBM WGS tumor CPT0277180006 CPT0277180006.WholeGenome.RP-2158.bam 21897875310 BAM submitted_aligned CPTAC3 fa0facad-8fbc-4a5d-96c2-8411703567db 9379b0efdd9bc7ee849ca36c91202ce2 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.WGS.T.hg38 C3L-04213 GBM WGS tumor CPT0277180006 c7af6007-1e13-438f-a4fe-d011d96669e3_wgs_gdc_realn.bam 65721149462 BAM harmonized CPTAC3 bb4472a3-b931-436b-a6f2-028f0e236229 b99b4a6035f3ac0b8e337daf4bb739c6 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.WXS.N C3L-04213 GBM WXS blood_normal CPT0277280002 CPT0277280002.WholeExome.RP-1303.bam 22097690328 BAM submitted_aligned CPTAC3 ac9dc9ca-abc7-466b-b437-6c0ad01f54a8 53e77bc1116781b243dd7f107ba6217c {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04213.WXS.N.hg38 C3L-04213 GBM WXS blood_normal CPT0277280002 1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wxs_gdc_realn.bam 30102627292 BAM harmonized CPTAC3 3cc11d4a-5a91-438c-9143-57a046ea5a10 ce7fc4fbc1f2b50ed449a29959b6b194 {"aliquot_tag": "ALQ_6ae5cb3a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04213.WXS.T C3L-04213 GBM WXS tumor CPT0277180006 CPT0277180006.WholeExome.RP-1303.bam 18647890722 BAM submitted_aligned CPTAC3 37eee658-03bf-40a1-9326-cf26d313e317 6edc71f9a21ec9cd3907b933b22c9517 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04213.WXS.T.hg38 C3L-04213 GBM WXS tumor CPT0277180006 c7af6007-1e13-438f-a4fe-d011d96669e3_wxs_gdc_realn.bam 26312189759 BAM harmonized CPTAC3 7c9986e7-ede7-4495-974b-2095f534a7f6 9b4bc59e3836c2d74d7e95495d477215 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.MethArray.Green.A C3L-04216 LSCC Methylation_Array tissue_normal CPT0304660007 204367470132_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 346edda4-9ae0-40d7-ba73-92973eec1e3b b27cce8ec17965262e943bf34653355c {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04216.MethArray.Green.T C3L-04216 LSCC Methylation_Array tumor CPT0304620007 204367490056_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 a839c1fd-300d-471d-9bd9-1190b0c5616c 369c5f2eea121afe825004b15c3feff0 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.MethArray.Red.A C3L-04216 LSCC Methylation_Array tissue_normal CPT0304660007 204367470132_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 eb46a8bd-914c-4670-870b-8bd5403d4932 816bca7081988bee69c593fb4fc3a291 {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04216.MethArray.Red.T C3L-04216 LSCC Methylation_Array tumor CPT0304620007 204367490056_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 ef8e860e-f2a7-489b-a32f-b55a4951308a 1ee824d5d62e745509b60c78422d47d9 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.miRNA-Seq.S22_L001_R1.T C3L-04216 LSCC miRNA-Seq tumor CPT0304620010 200325_UNC31-K00269_0272_AHHC2NBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 199514132 BAM S22_L001_R1 submitted_unaligned CPTAC3 c3a12fb8-1db3-4e56-824b-e494e3b98776 a86a7be5b5f6d33b1f3475f421442197 {"aliquot_tag": "ALQ_6087c627", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.miRNA-Seq.T.hg38 C3L-04216 LSCC miRNA-Seq tumor CPT0304620010 7f05998c-a7cb-4435-817d-0d409b45d832_mirnaseq_gdc_realn.bam 218566365 BAM harmonized CPTAC3 64b100f8-dc15-4835-8027-d896ed7b53b5 f7e00c2c9d2234f473dd2efbe5f2e69a {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.RNA-Seq.chimeric.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.chimeric.gdc_realn.bam 42568137 BAM chimeric harmonized CPTAC3 d7c629ef-90a1-46b5-9f1a-dab384b745a2 360c11f48624d09b81eccbba2bd25085 {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.RNA-Seq.genomic.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.genomic.gdc_realn.bam 7076559349 BAM genomic harmonized CPTAC3 b2ae43d7-46f3-4c41-a7ac-5a59daa3fedc e4432759c495db3815922de2446f9718 {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.RNA-Seq.S30_L008_R1.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R1_001.fastq.gz 3391145613 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 2b801f00-6d57-4304-b6f0-b622e817a416 4722af6fab925e3871defd1690a1cc7f {"aliquot_tag": "ALQ_6087c627", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.RNA-Seq.S30_L008_R2.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R2_001.fastq.gz 3498782473 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 56e142e2-4864-49a1-ad2e-475bf798ac98 11c83dbda791b3b768536a76a1c89014 {"aliquot_tag": "ALQ_6087c627", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.RNA-Seq.transcriptome.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.transcriptome.gdc_realn.bam 9038111446 BAM transcriptome harmonized CPTAC3 553262b4-3f14-4511-a044-17a1d2b2b9f0 74fc7dd0f616e71455113e38344e0ae4 {"aliquot_tag": "ALQ_6087c627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.WGS.N C3L-04216 LSCC WGS blood_normal CPT0304770002 CPT0304770002.WholeGenome.RP-2158.bam 29678900313 BAM submitted_aligned CPTAC3 30fdf796-1a1c-4616-84ec-fec8fffc2208 d5179392a7b000ee70ad01898e0094a8 {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04216.WGS.N.hg38 C3L-04216 LSCC WGS blood_normal CPT0304770002 a2382a43-bed8-4b19-89cd-a00478fe45be_wgs_gdc_realn.bam 88687570987 BAM harmonized CPTAC3 b20b030c-97f3-4a04-bac4-a3139d0bf489 e3a4b54cb385fc06742ab52da5352a71 {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04216.WGS.T C3L-04216 LSCC WGS tumor CPT0304620007 CPT0304620007.WholeGenome.RP-2158.bam 25798342330 BAM submitted_aligned CPTAC3 5babcc1c-b13a-4ac1-9002-97453f096e63 577f7c40bed9e73ecb4e9f1479c09210 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.WGS.T.hg38 C3L-04216 LSCC WGS tumor CPT0304620007 44f13f39-00b5-4c5b-9582-e06616a7f968_wgs_gdc_realn.bam 73775630867 BAM harmonized CPTAC3 2fc1dd2f-7571-42ee-820c-68341519e90c 175ca3d882bc3b6ef4309c2e6c2121a8 {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.WXS.A C3L-04216 LSCC WXS tissue_normal CPT0304660007 CPT0304660007.WholeExome.RP-1303.bam 19118619135 BAM submitted_aligned CPTAC3 273d95d0-f65f-4356-80a7-361e1549048d 6b2203be32e0f6d6634d1f583a187419 {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04216.WXS.A.hg38 C3L-04216 LSCC WXS tissue_normal CPT0304660007 8765621c-f7c5-4676-8cb8-0236550536b3_wxs_gdc_realn.bam 26748455331 BAM harmonized CPTAC3 2d53851d-0b3f-479d-975f-45e6aa26edc2 c0e22ecabb06b7ac7f4a3e1fcba051bb {"aliquot_tag": "ALQ_1278c405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04216.WXS.N C3L-04216 LSCC WXS blood_normal CPT0304770002 CPT0304770002.WholeExome.RP-1303.bam 21474490351 BAM submitted_aligned CPTAC3 c9489fce-1d85-45e0-aa6c-4ed549552072 42999502121bf99b8a170bfa52a951da {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04216.WXS.N.hg38 C3L-04216 LSCC WXS blood_normal CPT0304770002 a2382a43-bed8-4b19-89cd-a00478fe45be_wxs_gdc_realn.bam 29005630468 BAM harmonized CPTAC3 0021b0fd-e27f-4263-a44f-0af1347d4e39 644d92785e1b44d067812fe4d05f8768 {"aliquot_tag": "ALQ_942eca9f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04216.WXS.T C3L-04216 LSCC WXS tumor CPT0304620007 CPT0304620007.WholeExome.RP-1303.bam 22409704447 BAM submitted_aligned CPTAC3 8f9ec5e6-d77c-492f-8d9c-63e4d389bfe0 6d73d55128beafe4b6931daaa5c9688c {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04216.WXS.T.hg38 C3L-04216 LSCC WXS tumor CPT0304620007 44f13f39-00b5-4c5b-9582-e06616a7f968_wxs_gdc_realn.bam 30739432378 BAM harmonized CPTAC3 4c7de826-5434-4e0c-85bf-cc0a9ee5f3fa 67dd3d611e1db29f9f6ee81edac4de3d {"aliquot_tag": "ALQ_e7f862c5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04231.MethArray.Green.Tbm C3L-04231 AML Methylation_Array tumor_bone_marrow CPT0275480002 205555390164_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 39b9014d-6cd9-4b3c-a999-da8abea4e182 9a1755dabfffeae5a968799937123c86 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.MethArray.Red.Tbm C3L-04231 AML Methylation_Array tumor_bone_marrow CPT0275480002 205555390164_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 17ed8321-2e2b-4c73-a191-86dbf630731f fe605439d2f8711bf748eeb59773cdac {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.miRNA-Seq.S28_L002_R1.Tbm C3L-04231 AML miRNA-Seq tumor_bone_marrow CPT0275490002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAACTA_S28_L002_R1_001.unaln.bam 362742737 BAM S28_L002_R1 submitted_unaligned CPTAC3 ebfc821e-fffb-4d1b-9ffb-98f71a857c3d 1feef8404ecf8b36f18bf3ce0c737137 {"aliquot_tag": "ALQ_164310be", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.miRNA-Seq.Tbm.hg38 C3L-04231 AML miRNA-Seq tumor_bone_marrow CPT0275490002 ebbadb06-3614-4cdc-beac-b879e262503d_mirnaseq_gdc_realn.bam 386944131 BAM harmonized CPTAC3 b47ac028-a076-4914-b989-34205b47e69e 71d28a1c1e81715f3839a0a5991daa02 {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.RNA-Seq.chimeric.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.chimeric.gdc_realn.bam 38854268 BAM chimeric harmonized CPTAC3 c1d61c89-3d8b-4d7d-90ce-d26498c06060 d72f19a8f75bffb52cfdb23142a5a07a {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.RNA-Seq.genomic.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.genomic.gdc_realn.bam 8267197181 BAM genomic harmonized CPTAC3 8bcc6f9d-4535-4009-81bb-f86deadd16ee 2e4a72bee8caa3a073ce12c2e01fd5da {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.RNA-Seq.S63_L008_R1.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R1_001.fastq.gz 3267834385 FASTQ S63_L008_R1 submitted_unaligned CPTAC3 0ce5469b-6555-41ad-b583-abacf090c5ff f0ece8831346e01a468bc7efdd792611 {"aliquot_tag": "ALQ_164310be", "sample": "S63", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.RNA-Seq.S63_L008_R2.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R2_001.fastq.gz 3783588039 FASTQ S63_L008_R2 submitted_unaligned CPTAC3 14695f91-0a51-4d0d-883e-5c1fe933df93 7a970ac1de55d0fdf6538a45acec2099 {"aliquot_tag": "ALQ_164310be", "sample": "S63", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.RNA-Seq.transcriptome.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.transcriptome.gdc_realn.bam 7683392796 BAM transcriptome harmonized CPTAC3 1c17f6f6-acf4-484a-a466-340cc0305d43 eac31a422b3107a6530b3a7c5ac2a1db {"aliquot_tag": "ALQ_164310be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.WGS.Nbc C3L-04231 AML WGS buccal_normal CPT0275550001 CPT0275550001.WholeGenome.RP-2158.bam 55073835986 BAM submitted_aligned CPTAC3 9b1efd93-9766-48e1-afd2-4b8371bd5881 0b329a463eff2f44195f18dcb3ee6dbd {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04231.WGS.Nbc.hg38 C3L-04231 AML WGS buccal_normal CPT0275550001 3f65c678-a826-4ffa-b11a-480424b74dec_wgs_gdc_realn.bam 163200210374 BAM harmonized CPTAC3 529ad08a-dedd-4191-abe7-f747e9306138 91bbc9bd17e00f6a346ffa780cb8d79f {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04231.WGS.Tbm C3L-04231 AML WGS tumor_bone_marrow CPT0275480002 CPT0275480002.WholeGenome.RP-2158.bam 47398493399 BAM submitted_aligned CPTAC3 33099947-c5fc-4a12-91f4-978b9a511006 6c62161e272a6cbc5dd0cf87ef9ec007 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.WGS.Tbm.hg38 C3L-04231 AML WGS tumor_bone_marrow CPT0275480002 83b06238-a197-43b3-b710-4b287a9ad2c8_wgs_gdc_realn.bam 141972851013 BAM harmonized CPTAC3 ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c a900764d1c335d737fdc7ba018b4410b {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.WXS.Nbc C3L-04231 AML WXS buccal_normal CPT0275550001 CPT0275550001.WholeExome.RP-1303.bam 23015871457 BAM submitted_aligned CPTAC3 d235cade-b243-4d69-a57c-c28a7c071322 20ea20f647fb1daef9f06b6a1b189e9d {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04231.WXS.Nbc.hg38 C3L-04231 AML WXS buccal_normal CPT0275550001 3f65c678-a826-4ffa-b11a-480424b74dec_wxs_gdc_realn.bam 31967721084 BAM harmonized CPTAC3 16ae477a-e93e-467b-bcdc-4b3667ea8056 edd1bdf4f3642c492280740cf34dc8c4 {"aliquot_tag": "ALQ_81e67fa0", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04231.WXS.Tbm C3L-04231 AML WXS tumor_bone_marrow CPT0275480002 CPT0275480002.WholeExome.RP-1303.bam 21583087692 BAM submitted_aligned CPTAC3 ded479ec-b8ff-42b8-948b-e32e36108f49 679c9f3d5fadeccfcf8dc73808f94e47 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04231.WXS.Tbm.hg38 C3L-04231 AML WXS tumor_bone_marrow CPT0275480002 83b06238-a197-43b3-b710-4b287a9ad2c8_wxs_gdc_realn.bam 30045221236 BAM harmonized CPTAC3 b3326b22-689d-4b80-baba-b22e6e41b57e 42cce95afe377f1a490e4b0a2625f7b0 {"aliquot_tag": "ALQ_2b23390e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04236.MethArray.Green.Tbm C3L-04236 AML Methylation_Array tumor_bone_marrow CPT0275630002 205555390128_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fa65b946-00be-464e-acc0-b3e20eed6bd5 1690625867b31b6a3fedc0f8a4c989ff {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.MethArray.Red.Tbm C3L-04236 AML Methylation_Array tumor_bone_marrow CPT0275630002 205555390128_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 4c03850c-8c98-4e30-92b7-b449f8639af7 08c2f712dc1fe9925960eae045874a1f {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.miRNA-Seq.S21_L001_R1.Tbm C3L-04236 AML miRNA-Seq tumor_bone_marrow CPT0275640002 210702_UNC32-K00270_0289_AHKJ22BBXY_TTAGGC_S21_L001_R1_001.unaln.bam 240935302 BAM S21_L001_R1 submitted_unaligned CPTAC3 be935ea4-6a52-453b-9976-0c3c7a500396 463250a055184bd6dd6d93a3dcb38dc8 {"aliquot_tag": "ALQ_a31b7504", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.miRNA-Seq.Tbm.hg38 C3L-04236 AML miRNA-Seq tumor_bone_marrow CPT0275640002 5b563aa1-ba83-42d2-804e-37c96f35f282_mirnaseq_gdc_realn.bam 267716450 BAM harmonized CPTAC3 39ef4062-7a21-4ddb-80a6-1aa541968c23 73ffd6a026cce3569ab11863620450da {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.RNA-Seq.chimeric.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.chimeric.gdc_realn.bam 64437419 BAM chimeric harmonized CPTAC3 62a9ac70-cb62-4e39-b624-5f52e6d1f4a6 235307044f99213a0cf893e3d5201ea6 {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.RNA-Seq.genomic.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.genomic.gdc_realn.bam 9715154896 BAM genomic harmonized CPTAC3 148940bd-eaec-4e67-b622-ea81f2f0a269 f8464885381d1e4e2f405c771f76ad78 {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.RNA-Seq.S61_L008_R1.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R1_001.fastq.gz 4506933232 FASTQ S61_L008_R1 submitted_unaligned CPTAC3 53b6301b-9fe3-4e09-aa52-ad01479e1d61 9314b796b8f2c5e353a93c290b01ac65 {"aliquot_tag": "ALQ_a31b7504", "sample": "S61", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.RNA-Seq.S61_L008_R2.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R2_001.fastq.gz 5151304611 FASTQ S61_L008_R2 submitted_unaligned CPTAC3 d085633a-e3b6-4387-a6ea-6da417fb8c1e 85b09adbbea6c0910c07dadd6e7e12eb {"aliquot_tag": "ALQ_a31b7504", "sample": "S61", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.RNA-Seq.transcriptome.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.transcriptome.gdc_realn.bam 8836282604 BAM transcriptome harmonized CPTAC3 1af308f0-6297-45de-a808-fff5e89c6a16 3a8d599b56ecabbc3f363b2e2e57f24c {"aliquot_tag": "ALQ_a31b7504", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.WGS.Nbc C3L-04236 AML WGS buccal_normal CPT0275680002 CPT0275680002.WholeGenome.RP-2158.bam 63433547664 BAM submitted_aligned CPTAC3 a31026af-7909-41b5-94f4-dbecfa51029c e1dd91cbbfa3204114a231f69dbb90f7 {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04236.WGS.Nbc.hg38 C3L-04236 AML WGS buccal_normal CPT0275680002 2a94f3f0-5ef4-4443-9af7-d26820695de7_wgs_gdc_realn.bam 181836818026 BAM harmonized CPTAC3 fd22f225-d998-47b7-894b-79a9d7ac4109 dad459dee104e1374520d1c5329c759c {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04236.WGS.Tbm C3L-04236 AML WGS tumor_bone_marrow CPT0275630002 CPT0275630002.WholeGenome.RP-2158.bam 54552524185 BAM submitted_aligned CPTAC3 7c5ad9de-75b0-4582-a763-23415a198b90 05f1bcaebfbfcf592cd5ee733d9723a0 {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.WGS.Tbm.hg38 C3L-04236 AML WGS tumor_bone_marrow CPT0275630002 20c5a330-281b-4b20-9f44-f52e66634199_wgs_gdc_realn.bam 164129559131 BAM harmonized CPTAC3 88ec4690-af60-4ef8-970e-324e05ed6101 07b209b35744ef8fa018c410f65392c0 {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.WXS.Nbc C3L-04236 AML WXS buccal_normal CPT0275680002 CPT0275680002.WholeExome.RP-1303.bam 24233447816 BAM submitted_aligned CPTAC3 c1b93911-88aa-46a3-af54-d8b9180e1a15 534c75805b0d5a7d0f06b03a0fcd7605 {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04236.WXS.Nbc.hg38 C3L-04236 AML WXS buccal_normal CPT0275680002 2a94f3f0-5ef4-4443-9af7-d26820695de7_wxs_gdc_realn.bam 34079235614 BAM harmonized CPTAC3 da0e8d5a-812d-47f6-88c6-4dbf8db367a3 4f98d9a3dc5bacca925f7ac1edd6d6f9 {"aliquot_tag": "ALQ_66eb9805", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04236.WXS.Tbm C3L-04236 AML WXS tumor_bone_marrow CPT0275630002 CPT0275630002.WholeExome.RP-1303.bam 21851624507 BAM submitted_aligned CPTAC3 7dc4df2a-fd64-45b9-bff2-770d08248e71 dcfb5f4fe5910aed3512024b91f3ee3b {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04236.WXS.Tbm.hg38 C3L-04236 AML WXS tumor_bone_marrow CPT0275630002 20c5a330-281b-4b20-9f44-f52e66634199_wxs_gdc_realn.bam 30235908890 BAM harmonized CPTAC3 3158eeeb-311c-4bd3-8a9f-439a902f49ab e07442f363330669ce2689e0bb1d9c02 {"aliquot_tag": "ALQ_113ba914", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04241.MethArray.Green.Tbm C3L-04241 AML Methylation_Array tumor_bone_marrow CPT0259710002 203561450068_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 18477cec-d0f7-42f5-8ec5-a2f19873bead fd5ae9f0a2b988e95658f450c524b312 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.MethArray.Red.Tbm C3L-04241 AML Methylation_Array tumor_bone_marrow CPT0259710002 203561450068_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 5c9d3c73-a701-42b9-9d1a-4b8ceddb9975 c80f9de0715971b50b99840f045eb625 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.miRNA-Seq.S48_L003_R1.Tbm C3L-04241 AML miRNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGGCA_S48_L003_R1_001.unaln.bam 200898373 BAM S48_L003_R1 submitted_unaligned CPTAC3 b7b2e8bc-ff9d-4bbf-9d6a-89ece0597b83 aa85056ee366e4d26bca491e87a1e9c0 {"aliquot_tag": "ALQ_62823e08", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.miRNA-Seq.Tbm.hg38 C3L-04241 AML miRNA-Seq tumor_bone_marrow CPT0259720002 25841b59-60e7-4405-ab21-7fd5caffbb78_mirnaseq_gdc_realn.bam 226675275 BAM harmonized CPTAC3 f92dfe36-b1fd-42f9-b1af-32ff6383c43c ad4151ac90212938f5eebcfab0a7f551 {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.RNA-Seq.chimeric.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.chimeric.gdc_realn.bam 31300459 BAM chimeric harmonized CPTAC3 257bbf4d-ffff-4622-946d-2e8ad1c3426a 90e94d239545faba6dbcf0503d3de7ea {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.RNA-Seq.genomic.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.genomic.gdc_realn.bam 7676738392 BAM genomic harmonized CPTAC3 ee1cd012-0f56-4b5e-8964-695153c4d291 94aecff8f6634e89518de77d7bf9eac8 {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.RNA-Seq.S23_L006_R1.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R1_001.fastq.gz 3702110696 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 ad42ec5f-8d8a-4ead-81dd-6c3b8c515d6a 02c998e12985f4a5f348e17eb424210f {"aliquot_tag": "ALQ_62823e08", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.RNA-Seq.S23_L006_R2.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R2_001.fastq.gz 4122426618 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 c1340255-b0c0-47e4-b1ce-8886bff88015 71bb92d64009efda185402abcc9437c0 {"aliquot_tag": "ALQ_62823e08", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.RNA-Seq.transcriptome.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.transcriptome.gdc_realn.bam 8159988287 BAM transcriptome harmonized CPTAC3 f13d8f2b-8c2e-43a9-a9b9-70cbd3539a4c f1492813348229d3932d24b28dcd617a {"aliquot_tag": "ALQ_62823e08", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.WGS.Nbc C3L-04241 AML WGS buccal_normal CPT0259700003 CPT0259700003.WholeGenome.RP-1303.bam 81167848749 BAM submitted_aligned CPTAC3 5f3f298e-5365-4171-b289-96e0f9566b1a 80b88e1006b5330f063bb33efadf1069 {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04241.WGS.Nbc.hg38 C3L-04241 AML WGS buccal_normal CPT0259700003 d3d6f5df-52dd-408b-b664-4be0cf953c37_wgs_gdc_realn.bam 117181628293 BAM harmonized CPTAC3 70432235-b33a-4105-85d6-fc7d029cf3bd 0d6e886965b97c47905a8c9a74ab3ae3 {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04241.WGS.Tbm C3L-04241 AML WGS tumor_bone_marrow CPT0259710002 CPT0259710002.WholeGenome.RP-1303.bam 99486661609 BAM submitted_aligned CPTAC3 5c9ebcfd-88d6-4db7-9763-82d79a66bab7 0fd8ae3ee089788b53d618d0338c0c90 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.WGS.Tbm.hg38 C3L-04241 AML WGS tumor_bone_marrow CPT0259710002 5d24733b-18fb-4f02-bad0-da55cd28c6cd_wgs_gdc_realn.bam 144605811743 BAM harmonized CPTAC3 f8b81384-68cc-4fac-93d9-1ce01c490390 0c3e316fdd694853b6e360c7308cb375 {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.WXS.Nbc C3L-04241 AML WXS buccal_normal CPT0259700003 CPT0259700003.WholeExome.RP-1303.bam 31002100112 BAM submitted_aligned CPTAC3 4298ec25-fb35-468f-8378-028bbdbfc7dc deb23cffec4b638031467877d146e90d {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04241.WXS.Nbc.hg38 C3L-04241 AML WXS buccal_normal CPT0259700003 d3d6f5df-52dd-408b-b664-4be0cf953c37_wxs_gdc_realn.bam 43435398104 BAM harmonized CPTAC3 15389de3-14df-4a8a-ae92-d7fa0edf5a1d a447036812470f56cb6def506c51d9ca {"aliquot_tag": "ALQ_6f455dfe", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04241.WXS.Tbm C3L-04241 AML WXS tumor_bone_marrow CPT0259710002 CPT0259710002.WholeExome.RP-1303.bam 24272375779 BAM submitted_aligned CPTAC3 f7d75dcf-a15a-45b1-8887-c19101ad4745 0d37bbe2437f4ad0e2f00839ba1e17ad {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04241.WXS.Tbm.hg38 C3L-04241 AML WXS tumor_bone_marrow CPT0259710002 5d24733b-18fb-4f02-bad0-da55cd28c6cd_wxs_gdc_realn.bam 33953859058 BAM harmonized CPTAC3 67bb8beb-c429-4831-b486-bce2c83284cc aeea74863d352973a137cf14a4614e9e {"aliquot_tag": "ALQ_252244d8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.MethArray.Green.Tbm C3L-04242 AML Methylation_Array tumor_bone_marrow CPT0230840002 203561450030_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 273adeee-fc6f-44bb-a57e-8f4413d0463e ab45e08c08ecb54391ec65c09501ea78 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.MethArray.Red.Tbm C3L-04242 AML Methylation_Array tumor_bone_marrow CPT0230840002 203561450030_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 62d5eb5d-a7a7-474e-a145-f54afba882e4 53935019f1de49b5853e424e307651b8 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.miRNA-Seq.S36_L002_R1.Tbm C3L-04242 AML miRNA-Seq tumor_bone_marrow CPT0230850002 190508_UNC31-K00269_0215_BH7FYKBBXY_CCAACA_S36_L002_R1_001.unaln.bam 248394139 BAM S36_L002_R1 submitted_unaligned CPTAC3 1dbce217-6bac-4469-8921-d223bc90c48b 1a4c47783cd7223172c867d49b06683e {"aliquot_tag": "ALQ_72031c99", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.miRNA-Seq.Tbm.hg38 C3L-04242 AML miRNA-Seq tumor_bone_marrow CPT0230850002 5979bb73-5a43-425f-8a15-74af8233df0a_mirnaseq_gdc_realn.bam 274508068 BAM harmonized CPTAC3 0efc5385-0943-4744-8f81-507a64361729 82bdbbd8f5db7ff576cc386003adfc2e {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.RNA-Seq.chimeric.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.chimeric.gdc_realn.bam 29200234 BAM chimeric harmonized CPTAC3 40f045c6-8262-4db0-bfa2-af1e355c8857 12faef5361a909820fc621be146e9248 {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.RNA-Seq.genomic.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.genomic.gdc_realn.bam 6901440569 BAM genomic harmonized CPTAC3 81c059a5-52e9-438e-95ff-96340adf8d22 c10668fab2983f2cc82c8e987fb9ee78 {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.RNA-Seq.S26_L008_R1.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R1_001.fastq.gz 3319720826 FASTQ S26_L008_R1 submitted_unaligned CPTAC3 63878f36-065b-45cc-91ea-b02efdc596e7 58c7bd9a3c0f3f35261ced00bca07e5b {"aliquot_tag": "ALQ_72031c99", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.RNA-Seq.S26_L008_R2.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R2_001.fastq.gz 3758726347 FASTQ S26_L008_R2 submitted_unaligned CPTAC3 a20b9a94-48ff-4cfc-bb4e-d6fa58bd57bf f22c5fcccb82f363e06305455d6e111e {"aliquot_tag": "ALQ_72031c99", "sample": "S26", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.RNA-Seq.transcriptome.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.transcriptome.gdc_realn.bam 9236262753 BAM transcriptome harmonized CPTAC3 04638d91-b320-409d-bc8a-aa1e2d5950f4 2b3025d6298e717f5b1234bb84809b47 {"aliquot_tag": "ALQ_72031c99", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.WGS.Nbc C3L-04242 AML WGS buccal_normal CPT0230940001 CPT0230940001.WholeGenome.RP-1303.bam 83574991047 BAM submitted_aligned CPTAC3 03eb172b-29c0-4bb3-8379-aff99e3802ec 772cb0d0f4e1344a1f61dfc3da2e9bc9 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04242.WGS.Nbc.hg38 C3L-04242 AML WGS buccal_normal CPT0230940001 dd99c0f7-e658-4da0-91c9-7e3d92929307_wgs_gdc_realn.bam 117643143494 BAM harmonized CPTAC3 716018d2-bee2-43e5-9184-12dba57c70a6 27d9ce8090039d394b488ed569b0f2b4 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04242.WGS.Tbm C3L-04242 AML WGS tumor_bone_marrow CPT0230840002 CPT0230840002.WholeGenome.RP-1303.bam 63895492486 BAM submitted_aligned CPTAC3 cd7248d8-56c6-4d69-ad83-dcfcf6e6dfee 39f3315cdb60fdf53d03daf7ec8e6798 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.WGS.Tbm.hg38 C3L-04242 AML WGS tumor_bone_marrow CPT0230840002 991fec13-5393-4eef-ab57-196468f6c8a2_wgs_gdc_realn.bam 92376395911 BAM harmonized CPTAC3 95aa6faf-55af-4f6b-b01d-260bb025fec7 4e4bd8e617dce4840f2bf693932ed2d2 {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.WXS.Nbc C3L-04242 AML WXS buccal_normal CPT0230940001 CPT0230940001.WholeExome.RP-1303.bam 26687815105 BAM submitted_aligned CPTAC3 8104a347-a7e0-476c-9bb3-2b07a8147776 4075257dc149949b6c1e5c03ef47a184 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04242.WXS.Nbc.hg38 C3L-04242 AML WXS buccal_normal CPT0230940001 dd99c0f7-e658-4da0-91c9-7e3d92929307_wxs_gdc_realn.bam 36961780939 BAM harmonized CPTAC3 e9215e98-3c2f-4f4c-ac38-06ac91e1a611 1c8c7782dfea1897e6989737b0391976 {"aliquot_tag": "ALQ_1d36b736", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04242.WXS.Tbm C3L-04242 AML WXS tumor_bone_marrow CPT0230840002 CPT0230840002.WholeExome.RP-1303.bam 17007750217 BAM submitted_aligned CPTAC3 1931cfc8-3e04-45bf-a4a8-9cf7215e9965 7cd297e14aff4208ce36722ec92c69fc {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04242.WXS.Tbm.hg38 C3L-04242 AML WXS tumor_bone_marrow CPT0230840002 991fec13-5393-4eef-ab57-196468f6c8a2_wxs_gdc_realn.bam 24070335308 BAM harmonized CPTAC3 179afd3f-ea49-49ce-ad35-bd1198888fcd 8bf43660217e96db0b6c6b0e79dc912c {"aliquot_tag": "ALQ_4f633529", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.MethArray.Green.Tbm C3L-04244 AML Methylation_Array tumor_bone_marrow CPT0259780002 203561620087_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9db3e6da-5fc3-4102-8de7-4c921e3534ac 40d02ddd6a3ddf08df65021271821b0f {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.MethArray.Red.Tbm C3L-04244 AML Methylation_Array tumor_bone_marrow CPT0259780002 203561620087_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 f51aceb1-8ee6-4c20-9135-355dac8f96a7 97db087fe6799ffada8d24e660d07b26 {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.miRNA-Seq.S45_L002_R1.Tbm C3L-04244 AML miRNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCATTC_S45_L002_R1_001.unaln.bam 156614325 BAM S45_L002_R1 submitted_unaligned CPTAC3 3c7bf44b-5b09-4a3c-bcb7-428a500ac022 0f42279a298b7fa0098e381c303c6bd2 {"aliquot_tag": "ALQ_15520f19", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.miRNA-Seq.Tbm.hg38 C3L-04244 AML miRNA-Seq tumor_bone_marrow CPT0259790002 fad3bf5e-4e8d-4b22-92c6-21baefa32138_mirnaseq_gdc_realn.bam 173576447 BAM harmonized CPTAC3 9f5882ee-f636-4684-8073-364de737abdb 9d8092d8baca79a3a6e2efe93d3787cc {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.RNA-Seq.chimeric.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.chimeric.gdc_realn.bam 29900709 BAM chimeric harmonized CPTAC3 365be7e5-d1d0-40cb-9d52-babef3953301 95952db098d372bc96f948afe37e38ce {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.RNA-Seq.genomic.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.genomic.gdc_realn.bam 8030250235 BAM genomic harmonized CPTAC3 f5bc0ea8-208c-4dba-b61f-7c40d256ecd7 eee357fca1eb9e2b4e44fbb333db43cf {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.RNA-Seq.S20_L006_R1.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R1_001.fastq.gz 3815423785 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 150db7f3-283f-45ee-935c-7bf039676f83 b055eef7ce1329326a4bd98c56d9d653 {"aliquot_tag": "ALQ_15520f19", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.RNA-Seq.S20_L006_R2.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R2_001.fastq.gz 4173033955 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 dec8586b-52ac-42b0-89e7-80a0aeec0932 ed0435b38037b659723ce4c44d0ad342 {"aliquot_tag": "ALQ_15520f19", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.RNA-Seq.transcriptome.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.transcriptome.gdc_realn.bam 8340430953 BAM transcriptome harmonized CPTAC3 2d297e8e-d812-4824-9a11-6d6497ce5e4b da26c36eda11ee2e368132faa9a4c16a {"aliquot_tag": "ALQ_15520f19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.WGS.Tbm C3L-04244 AML WGS tumor_bone_marrow CPT0259780002 CPT0259780002.WholeGenome.RP-1303.bam 66310918578 BAM submitted_aligned CPTAC3 b2b4884f-422d-464f-a705-e98bb52022f6 a9aca99343504522c34b6d67c7dd49ae {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.WGS.Tbm.hg38 C3L-04244 AML WGS tumor_bone_marrow CPT0259780002 bbb32038-b637-46bd-8bd8-73d8628a7605_wgs_gdc_realn.bam 97265442765 BAM harmonized CPTAC3 a290b432-363b-461f-9b1e-93f6508dce07 c190eac1960e18cbddc41c69c7e0bb62 {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.WXS.Nbc C3L-04244 AML WXS buccal_normal CPT0259770003 CPT0259770003.WholeExome.RP-1303.bam 27888814376 BAM submitted_aligned CPTAC3 ed4e27a8-4d52-495e-bf77-db933c583032 e6d3f5c96e6af956d4eaf657c4b3c4ad {"aliquot_tag": "ALQ_dd6581ee", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04244.WXS.Nbc.hg38 C3L-04244 AML WXS buccal_normal CPT0259770003 b2627576-0f3d-47e4-990c-13250340107e_wxs_gdc_realn.bam 38657495451 BAM harmonized CPTAC3 c72cec50-cbdf-466a-95fb-1dd6de93f6d4 6e730b87f4fbce74584b38ef0dc42189 {"aliquot_tag": "ALQ_dd6581ee", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04244.WXS.Tbm C3L-04244 AML WXS tumor_bone_marrow CPT0259780002 CPT0259780002.WholeExome.RP-1303.bam 23325976966 BAM submitted_aligned CPTAC3 5dc67c14-a3c4-4fc5-a26f-5e3779ec9775 b149d00f59b97173ccea2c790193e979 {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04244.WXS.Tbm.hg38 C3L-04244 AML WXS tumor_bone_marrow CPT0259780002 bbb32038-b637-46bd-8bd8-73d8628a7605_wxs_gdc_realn.bam 32408736328 BAM harmonized CPTAC3 947b36be-2be0-429c-a8ce-c78d1dedad79 7abc6c1e50386126782376f6219ab3ba {"aliquot_tag": "ALQ_283226a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.MethArray.Green.Tbm C3L-04245 AML Methylation_Array tumor_bone_marrow CPT0259920002 203561450046_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3242dd07-7437-4fe5-a35c-8f2a6bd21e1f 0e428b7f257f94466e0b3179ecf07e33 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.MethArray.Red.Tbm C3L-04245 AML Methylation_Array tumor_bone_marrow CPT0259920002 203561450046_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 903b16da-a645-40b4-8066-e001895f5e87 375dd0bd88167f2a18a9805656ec2ce1 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.miRNA-Seq.S46_L002_R1.Tbm C3L-04245 AML miRNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCCCGA_S46_L002_R1_001.unaln.bam 223199404 BAM S46_L002_R1 submitted_unaligned CPTAC3 8ff36bc5-b771-4cce-961b-ff35fd9d2408 0777e1eae488b8119ca500c03ebc8216 {"aliquot_tag": "ALQ_65e876c8", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.miRNA-Seq.Tbm.hg38 C3L-04245 AML miRNA-Seq tumor_bone_marrow CPT0259930002 c95192a1-679e-421c-a70c-f412243f6104_mirnaseq_gdc_realn.bam 248921331 BAM harmonized CPTAC3 30cf7bd5-1d7c-4045-9222-870eb1ea847f fecd511e325e46b8d4b6592a56ff341b {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.RNA-Seq.chimeric.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.chimeric.gdc_realn.bam 33616195 BAM chimeric harmonized CPTAC3 ab6ac690-1153-4e5c-8da5-b5e5cb06d938 0e793f32e0f85ca695fbe717dd83efb9 {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.RNA-Seq.genomic.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.genomic.gdc_realn.bam 7857182380 BAM genomic harmonized CPTAC3 6bedc81e-0f78-4dd9-9f08-10f71bf31269 b8cc9a2f885d21330c6b49057a6894de {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.RNA-Seq.S21_L006_R1.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R1_001.fastq.gz 4001270026 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 6fb816c2-0f0c-4635-9d44-cb40175986d6 20bbd0a49b3a6faf759694bf5e0d32e4 {"aliquot_tag": "ALQ_65e876c8", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.RNA-Seq.S21_L006_R2.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R2_001.fastq.gz 4305412368 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 aa6df772-e18a-47b2-b488-7a5c2b0b6cbf a17a3e4150a25ec28e4ceb09f5face0b {"aliquot_tag": "ALQ_65e876c8", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.RNA-Seq.transcriptome.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.transcriptome.gdc_realn.bam 9060230959 BAM transcriptome harmonized CPTAC3 b314e98e-b924-4451-b339-cba2ee391512 83d4c7bb3a65dd05c2b1e07055b890f3 {"aliquot_tag": "ALQ_65e876c8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.WGS.Nbc C3L-04245 AML WGS buccal_normal CPT0259910003 CPT0259910003.WholeGenome.RP-1303.bam 69235047437 BAM submitted_aligned CPTAC3 0712e1b6-9752-4162-9110-0958993ed412 db2af2ac276103eaaca23fb64f7c2700 {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04245.WGS.Nbc.hg38 C3L-04245 AML WGS buccal_normal CPT0259910003 8899c961-0df9-45dd-ab06-13a0365ac9cc_wgs_gdc_realn.bam 107260033742 BAM harmonized CPTAC3 9a88768d-4af8-464d-ad42-eb8a9ae6b7af dd0441eb6a7ea5801ac1efa3cb528dde {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04245.WGS.Tbm C3L-04245 AML WGS tumor_bone_marrow CPT0259920002 CPT0259920002.WholeGenome.RP-1303.bam 64636149051 BAM submitted_aligned CPTAC3 db778e02-7829-4852-b2f2-79f9741c7b61 85c1bca2b295547dfed7b7fb127606a5 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.WGS.Tbm.hg38 C3L-04245 AML WGS tumor_bone_marrow CPT0259920002 40689824-ea16-45ed-a761-7d19aa08676d_wgs_gdc_realn.bam 94638731543 BAM harmonized CPTAC3 419cf2fb-18cd-4a3e-90b5-2dd8ef7ac714 4e2d5fbe6a2ac94037ad3867d0f6ebe4 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.WXS.Nbc C3L-04245 AML WXS buccal_normal CPT0259910003 CPT0259910003.WholeExome.RP-1303.bam 23427190623 BAM submitted_aligned CPTAC3 fe3e36d3-4adf-45bd-867c-833e3bf7fc97 3ae93f8090d04e2eb9278bfa59dbcbaf {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04245.WXS.Nbc.hg38 C3L-04245 AML WXS buccal_normal CPT0259910003 8899c961-0df9-45dd-ab06-13a0365ac9cc_wxs_gdc_realn.bam 32590349162 BAM harmonized CPTAC3 f8eb0ba7-5fe1-4f29-9611-b92247e40c4d 1d6d5df3ec190439543f7268a8d919d1 {"aliquot_tag": "ALQ_682f153e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04245.WXS.Tbm C3L-04245 AML WXS tumor_bone_marrow CPT0259920002 CPT0259920002.WholeExome.RP-1303.bam 29005105500 BAM submitted_aligned CPTAC3 bfff7243-122b-4810-8c56-4d5662d3073b cae369d322e8d67b86f938335074f8e9 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04245.WXS.Tbm.hg38 C3L-04245 AML WXS tumor_bone_marrow CPT0259920002 40689824-ea16-45ed-a761-7d19aa08676d_wxs_gdc_realn.bam 40743093394 BAM harmonized CPTAC3 c417e8e9-ff83-4ed2-a4ca-558e2be1d51d 9519158b47b23465abb64e8c4b79e641 {"aliquot_tag": "ALQ_58885f78", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.MethArray.Green.Tbm C3L-04250 AML Methylation_Array tumor_bone_marrow CPT0260060002 203561450006_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 15d612b3-641e-44af-adbe-24ca84c5b1a1 eee5fbcb1b6dbbc1c5d4d9d04c8de5e4 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.MethArray.Red.Tbm C3L-04250 AML Methylation_Array tumor_bone_marrow CPT0260060002 203561450006_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 2f7a1135-69ea-4a6c-8b56-8e95157a6f36 8c1f274a5686d3469d0c676ec8679b5c {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.miRNA-Seq.S47_L003_R1.Tbm C3L-04250 AML miRNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGAAG_S47_L003_R1_001.unaln.bam 172034425 BAM S47_L003_R1 submitted_unaligned CPTAC3 f33568f8-e132-498b-8877-706cf357a015 0698748b709467779ccf78fddb23dcbf {"aliquot_tag": "ALQ_ac70c3f0", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.miRNA-Seq.Tbm.hg38 C3L-04250 AML miRNA-Seq tumor_bone_marrow CPT0260070002 13320cc8-fd6f-4c9b-b6e4-83d04a93bddf_mirnaseq_gdc_realn.bam 198259229 BAM harmonized CPTAC3 27236254-102f-449b-9111-d5c1315d2308 e2471aa714aa39826c9c5e39f19a6960 {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.RNA-Seq.chimeric.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.chimeric.gdc_realn.bam 29917306 BAM chimeric harmonized CPTAC3 997c5ba1-7e7d-4737-9416-20be5cb5be8f 8369e8663871d534b0b292e7ed75998b {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.RNA-Seq.genomic.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.genomic.gdc_realn.bam 7480507952 BAM genomic harmonized CPTAC3 00de3a43-f673-45df-864d-a80180055802 4774e2f4840ca1cfbf02c5c90d34e695 {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.RNA-Seq.S22_L006_R1.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R1_001.fastq.gz 3689705206 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 ddaa1a34-5387-44c9-9039-aaa071dc213d 81f63fcec148f8eaf0c8b68b4b238dc9 {"aliquot_tag": "ALQ_ac70c3f0", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.RNA-Seq.S22_L006_R2.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R2_001.fastq.gz 3986920316 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 b0efb625-e897-4171-9c3d-19fbcc95e68d 14a299a8ec54a6ccc7ef11071ca2d89e {"aliquot_tag": "ALQ_ac70c3f0", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.RNA-Seq.transcriptome.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.transcriptome.gdc_realn.bam 7907486077 BAM transcriptome harmonized CPTAC3 6a2968c6-8ac9-4ca4-a19d-e1e6e01868d1 35def27efb3812ddb1d3b7044fafa7ea {"aliquot_tag": "ALQ_ac70c3f0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.WGS.Nbc C3L-04250 AML WGS buccal_normal CPT0260050003 CPT0260050003.WholeGenome.RP-1303.bam 72419323247 BAM submitted_aligned CPTAC3 93daa485-327f-477a-b2b8-5bcc8f7ea031 9c9c6e61f745263925dea1279a71fb86 {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04250.WGS.Nbc.hg38 C3L-04250 AML WGS buccal_normal CPT0260050003 0a9cd9ca-4e79-432a-b867-657633a54a05_wgs_gdc_realn.bam 104723073342 BAM harmonized CPTAC3 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 b41a9c69074b54e4ef05fea6f886d5c9 {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04250.WGS.Tbm C3L-04250 AML WGS tumor_bone_marrow CPT0260060002 CPT0260060002.WholeGenome.RP-1303.bam 64368595881 BAM submitted_aligned CPTAC3 cad468d2-0566-4b25-977c-8ad12f625d4b d671d67dec2d6a47593bd4fee6e93722 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.WGS.Tbm.hg38 C3L-04250 AML WGS tumor_bone_marrow CPT0260060002 a1f75b6d-197c-4dd6-9bc1-51210d45b7e6_wgs_gdc_realn.bam 95862795691 BAM harmonized CPTAC3 539b6614-4424-4a68-8462-e3ab2867246e c4491d6e56899cfa40bc425880d88551 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.WXS.Nbc C3L-04250 AML WXS buccal_normal CPT0260050003 CPT0260050003.WholeExome.RP-1303.bam 25272370019 BAM submitted_aligned CPTAC3 f4f57127-a0aa-45e9-8078-377a412aee83 2429e3ca8ddd4f527248a4de1f649c0b {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04250.WXS.Nbc.hg38 C3L-04250 AML WXS buccal_normal CPT0260050003 0a9cd9ca-4e79-432a-b867-657633a54a05_wxs_gdc_realn.bam 35070999601 BAM harmonized CPTAC3 4fd2af8b-5f99-4023-b9d8-4f33a604ecc1 f8ca68e17429fdd82cc63226c11e8a7f {"aliquot_tag": "ALQ_a1b7a006", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04250.WXS.Tbm C3L-04250 AML WXS tumor_bone_marrow CPT0260060002 CPT0260060002.WholeExome.RP-1303.bam 25253489540 BAM submitted_aligned CPTAC3 7d1ea737-e5c7-4ae9-9f40-8ed794648f01 c477319179685e68005907623bd79ed2 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04250.WXS.Tbm.hg38 C3L-04250 AML WXS tumor_bone_marrow CPT0260060002 a1f75b6d-197c-4dd6-9bc1-51210d45b7e6_wxs_gdc_realn.bam 34787269710 BAM harmonized CPTAC3 e8bf2908-cee5-45e5-8f8c-9c8702937d29 5f3de099c160d5a5132c9b0dd5b95e90 {"aliquot_tag": "ALQ_9110ea40", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.MethArray.Green.Tbm C3L-04263 AML Methylation_Array tumor_bone_marrow CPT0302480002 205555380155_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a4ac7b0a-1a05-4f04-bd52-70a7fdb03336 63016a8cfc7a584cb43dce90a8a68cff {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.MethArray.Red.Tbm C3L-04263 AML Methylation_Array tumor_bone_marrow CPT0302480002 205555380155_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 c2eb8ae6-b2ab-4c8b-bcbc-306f3ec72f6c b6b48a91f549573ac0ecfb03ad85852d {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.miRNA-Seq.S3_L001_R1.Tbm C3L-04263 AML miRNA-Seq tumor_bone_marrow CPT0302490002 210702_UNC32-K00270_0289_AHKJ22BBXY_AGTCAA_S3_L001_R1_001.unaln.bam 373583556 BAM S3_L001_R1 submitted_unaligned CPTAC3 8b0e3b26-b65f-4ee1-a18b-62890464eb00 22944e03df6b64585bc1de862c7fed55 {"aliquot_tag": "ALQ_ce5a336a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.miRNA-Seq.Tbm.hg38 C3L-04263 AML miRNA-Seq tumor_bone_marrow CPT0302490002 0f266214-ee2e-4331-bf4d-27eec0fcf923_mirnaseq_gdc_realn.bam 398824637 BAM harmonized CPTAC3 5052b32a-9208-43f1-af27-a1d6ecb1183d bbc6f3115220826e12a999f089129727 {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.RNA-Seq.chimeric.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.chimeric.gdc_realn.bam 153756226 BAM chimeric harmonized CPTAC3 6266f05d-cf44-41f7-b008-7dfe97e4e2d8 faaecb83b42f7710a54ee138af2b3b39 {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.RNA-Seq.genomic.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.genomic.gdc_realn.bam 7384893748 BAM genomic harmonized CPTAC3 205098c5-5e9d-424e-8f41-007bd0d9013b 82fd79b682a67d205331cb97bff905e8 {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.RNA-Seq.S18_L005_R1.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R1_001.fastq.gz 3811517383 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 50d95169-c9e1-4ace-b490-77bb93633130 9fc5c7975f3d820259954a5feecf3a7c {"aliquot_tag": "ALQ_ce5a336a", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.RNA-Seq.S18_L005_R2.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R2_001.fastq.gz 4043219750 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 e5dbbe15-28a7-4d3b-968c-08bc5b42d514 0af88ae5fafcda25e9df09571fc24e56 {"aliquot_tag": "ALQ_ce5a336a", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.RNA-Seq.transcriptome.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.transcriptome.gdc_realn.bam 9076705787 BAM transcriptome harmonized CPTAC3 5087e4e6-ca6f-4c33-8a3e-165a3d46f61a 6d86b008e7616ee724a1a2f9d00bd18b {"aliquot_tag": "ALQ_ce5a336a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.WGS.Nbc C3L-04263 AML WGS buccal_normal CPT0302580001 CPT0302580001.WholeGenome.RP-2158.bam 44190726818 BAM submitted_aligned CPTAC3 79ca61b8-8714-4d6d-82d5-48b40189664c 0c0f15aefc4ffdcffdaacf31b70ebd8f {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04263.WGS.Nbc.hg38 C3L-04263 AML WGS buccal_normal CPT0302580001 74b5645c-6c73-4d3f-b50a-22231bbbb212_wgs_gdc_realn.bam 128323112228 BAM harmonized CPTAC3 142d091a-aba1-4173-8c45-567d7ce4ee7f d8ccb0feb9c3be772d3cb450a0588f70 {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04263.WGS.Tbm C3L-04263 AML WGS tumor_bone_marrow CPT0302480002 CPT0302480002.WholeGenome.RP-2158.bam 52129382369 BAM submitted_aligned CPTAC3 b1a92ab2-4108-42bf-8fe7-65cb7142179f 9a3a1b83edec53a408ad3ce87ec3b1ab {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.WGS.Tbm.hg38 C3L-04263 AML WGS tumor_bone_marrow CPT0302480002 27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wgs_gdc_realn.bam 153021383594 BAM harmonized CPTAC3 fdae0859-8401-4b76-8d57-bb6607a778c8 f51c1158d21881dea927a42ea664813e {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.WXS.Nbc C3L-04263 AML WXS buccal_normal CPT0302580001 CPT0302580001.WholeExome.RP-1303.bam 22994863044 BAM submitted_aligned CPTAC3 835126de-ec66-4001-9667-d72ca715b19d cc0e08520b5696fac86d3efdadb2ce44 {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04263.WXS.Nbc.hg38 C3L-04263 AML WXS buccal_normal CPT0302580001 74b5645c-6c73-4d3f-b50a-22231bbbb212_wxs_gdc_realn.bam 32206402604 BAM harmonized CPTAC3 812bb6f6-a281-4876-b300-5353cea468aa f98151bd25a0c5b3b7fd8e143b497138 {"aliquot_tag": "ALQ_a16f98c5", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04263.WXS.Tbm C3L-04263 AML WXS tumor_bone_marrow CPT0302480002 CPT0302480002.WholeExome.RP-1303.bam 27622262879 BAM submitted_aligned CPTAC3 605dac6b-49b9-4cf2-b5ee-e4abcb66f773 51541505daacbc8ba2c3136f0a3e26b6 {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04263.WXS.Tbm.hg38 C3L-04263 AML WXS tumor_bone_marrow CPT0302480002 27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wxs_gdc_realn.bam 39100014434 BAM harmonized CPTAC3 9ef14de8-459f-4868-9ebc-f369eeedc6ff 63aa024fbcd2dfbca8761420edeae58b {"aliquot_tag": "ALQ_f33a1ada", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04265.MethArray.Green.Tbm C3L-04265 AML Methylation_Array tumor_bone_marrow CPT0230980002 203561450102_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b4ce4486-20c6-4d80-a1c0-c786ea7b2bcc af6bbae2306035b75bdd94030f06bda8 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.MethArray.Red.Tbm C3L-04265 AML Methylation_Array tumor_bone_marrow CPT0230980002 203561450102_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 c92414fe-493f-457d-82b2-fd95e0cecdee 9ced579a9e780ced89144b720d5dc4cd {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.miRNA-Seq.S37_L002_R1.Tbm C3L-04265 AML miRNA-Seq tumor_bone_marrow CPT0231000002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGGAAT_S37_L002_R1_001.unaln.bam 269073776 BAM S37_L002_R1 submitted_unaligned CPTAC3 b9cc71f0-f4ff-45e5-822a-d9ab70266015 fbd1e1375e8f03899ead4a6c104cb1df {"aliquot_tag": "ALQ_f0c71a30", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.miRNA-Seq.Tbm.hg38 C3L-04265 AML miRNA-Seq tumor_bone_marrow CPT0231000002 d8c97a7b-61ed-4118-bde8-edbeaaf898f4_mirnaseq_gdc_realn.bam 302941218 BAM harmonized CPTAC3 d6763eaa-d1c8-421d-b3ad-d913c339a556 f8ade8a88725b1329d836633ca0ff655 {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.RNA-Seq.chimeric.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.chimeric.gdc_realn.bam 36309269 BAM chimeric harmonized CPTAC3 a839acad-3f7e-499d-b15b-28fc528eee19 73fb7d280d6949e02d328f5604f75a3a {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.RNA-Seq.genomic.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.genomic.gdc_realn.bam 8837126874 BAM genomic harmonized CPTAC3 87bd2380-b56e-4661-8407-32aaed05effc 9f4e7383594a4024aeeb4cf81f646a9c {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.RNA-Seq.S21_L006_R1.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R1_001.fastq.gz 4310509333 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 53af00b1-31cd-4f05-9545-fd6eefaee541 4ae1fff5161cbc220f88e4614d02cb8c {"aliquot_tag": "ALQ_f0c71a30", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.RNA-Seq.S21_L006_R2.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R2_001.fastq.gz 4843139994 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 ab360685-deb0-47d2-8ae9-858cd090f7f3 661249850d28af6ab200215296f9c325 {"aliquot_tag": "ALQ_f0c71a30", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.RNA-Seq.transcriptome.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.transcriptome.gdc_realn.bam 9992097480 BAM transcriptome harmonized CPTAC3 8c246866-dd21-4d67-822e-7df7a39710ed f07b19fc8c41b01b8e774d45a4519b5a {"aliquot_tag": "ALQ_f0c71a30", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.WGS.Nbc C3L-04265 AML WGS buccal_normal CPT0231080001 CPT0231080001.WholeGenome.RP-1303.bam 79314045664 BAM submitted_aligned CPTAC3 42f29cdd-a55c-4a70-a7cb-6424fd59ae0b 228abc28784d41dbf662f7b465749bf3 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04265.WGS.Nbc.hg38 C3L-04265 AML WGS buccal_normal CPT0231080001 f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wgs_gdc_realn.bam 114103636308 BAM harmonized CPTAC3 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 264f8322142dc0f9e00e23f698a7d913 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04265.WGS.Tbm C3L-04265 AML WGS tumor_bone_marrow CPT0230980002 CPT0230980002.WholeGenome.RP-1303.bam 68601861144 BAM submitted_aligned CPTAC3 699161d3-6aaa-4e16-8b1b-4614d836cb91 ea8d0b6c05dee40feecccb8b34e29c89 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.WGS.Tbm.hg38 C3L-04265 AML WGS tumor_bone_marrow CPT0230980002 3ea9c4aa-eba1-4958-a2c1-04867a968f63_wgs_gdc_realn.bam 100425222211 BAM harmonized CPTAC3 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 3e45e3ae5aebfa0ce9b000243ff82522 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.WXS.Nbc C3L-04265 AML WXS buccal_normal CPT0231080001 CPT0231080001.WholeExome.RP-1303.bam 33903908026 BAM submitted_aligned CPTAC3 c56e9dae-93c1-4367-b3a6-81e7028f4eca 8033d0d7e00e98b55d0b153a9fe84497 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04265.WXS.Nbc.hg38 C3L-04265 AML WXS buccal_normal CPT0231080001 f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wxs_gdc_realn.bam 46731678277 BAM harmonized CPTAC3 6d54295f-abfd-4903-b7da-a345847aba8c 32c70ab4f5ff86ad444d5f9487155968 {"aliquot_tag": "ALQ_59be004b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04265.WXS.Tbm C3L-04265 AML WXS tumor_bone_marrow CPT0230980002 CPT0230980002.WholeExome.RP-1303.bam 21431856866 BAM submitted_aligned CPTAC3 e16d072d-6bdd-4c3e-a81e-f3d1dac38e17 3644fc2f12d0047ad9ac91a07ea5e65e {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04265.WXS.Tbm.hg38 C3L-04265 AML WXS tumor_bone_marrow CPT0230980002 3ea9c4aa-eba1-4958-a2c1-04867a968f63_wxs_gdc_realn.bam 29828921940 BAM harmonized CPTAC3 80c95db4-ec3f-4be0-b4ae-217eeee992c5 ee0bbe4edc54b2d4cbf14ddfd2e1aca2 {"aliquot_tag": "ALQ_41cf0b8d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04269.MethArray.Green.Tpb C3L-04269 AML Methylation_Array tumor_peripheral_blood CPT0410160002 205987780101_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 55b6c9a6-016c-4532-8d80-a7981d5f5dd6 41f2993ea6823e6ac05c30c9d2f0a6a2 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.MethArray.Red.Tpb C3L-04269 AML Methylation_Array tumor_peripheral_blood CPT0410160002 205987780101_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 caad17c1-9a7b-4429-960c-599c4897de9d 52e1a8f3a7cd9b5154ce9fda974fb207 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.miRNA-Seq.S8_L003_R1.Tpb C3L-04269 AML miRNA-Seq tumor_peripheral_blood CPT0410170002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L003_R1_001.unaln.bam 283806388 BAM S8_L003_R1 submitted_unaligned CPTAC3 084b6930-ac45-47ed-92c6-cbb9d86235d8 c72df745a4db24bba8f5c8c90872fafe {"aliquot_tag": "ALQ_1ef360c6", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.miRNA-Seq.Tpb.hg38 C3L-04269 AML miRNA-Seq tumor_peripheral_blood CPT0410170002 fce961e4-2acc-42b4-8346-b9bde2d6919a_mirnaseq_gdc_realn.bam 314868999 BAM harmonized CPTAC3 8d4e8a1b-e79c-4e73-b824-f3b39eac6929 f7ecc4a8bfb7cb193937723bbcc3c20e {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.RNA-Seq.chimeric.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.chimeric.gdc_realn.bam 652421558 BAM chimeric harmonized CPTAC3 05a79073-f918-4edd-ad78-8e60f24015ca 54f7847a3b81be65d9827a857865c14e {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.RNA-Seq.genomic.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.genomic.gdc_realn.bam 8067191807 BAM genomic harmonized CPTAC3 c208f3c1-07a2-4c33-bef3-1d785b254c29 cfad4033e0c32e4d3c1c4e6e021d6acf {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.RNA-Seq.S32_L008_R1.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R1_001.fastq.gz 3791093449 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 d548139e-dcbb-4064-a6e5-47466195bc6b 73646eed446b369344bf6f9f6080a799 {"aliquot_tag": "ALQ_1ef360c6", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.RNA-Seq.S32_L008_R2.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R2_001.fastq.gz 4294650540 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 9405337a-8f55-4d24-8926-d7fcb09c492b eb6c33776603b1a1fe8b5128e83b9596 {"aliquot_tag": "ALQ_1ef360c6", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.RNA-Seq.transcriptome.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.transcriptome.gdc_realn.bam 8320905355 BAM transcriptome harmonized CPTAC3 65c880d2-e0e0-46f0-a212-8b118bed066e 4e330b0c451cd4f8306f612ab6729dc5 {"aliquot_tag": "ALQ_1ef360c6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.WGS.Tpb C3L-04269 AML WGS tumor_peripheral_blood CPT0410160002 CPT0410160002.WholeGenome.RP-2158.bam 52289007257 BAM submitted_aligned CPTAC3 c206d65e-f256-471f-a5ec-a49f76d4bd5f 2c22e58d81445b1cc22de6df7d40e35c {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.WGS.Tpb.hg38 C3L-04269 AML WGS tumor_peripheral_blood CPT0410160002 5429cc08-8a1f-4a73-906e-f4946bddf5ac_wgs_gdc_realn.bam 153654322913 BAM harmonized CPTAC3 91ab2d1f-bde2-467f-946e-046e2beaf400 d933e50ad1b9652b8d5fd053b2437b1f {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.WXS.Nbc C3L-04269 AML WXS buccal_normal CPT0410130001 CPT0410130001.WholeExome.RP-1303.bam 23690432559 BAM submitted_aligned CPTAC3 477a261a-0032-4370-980e-9a7f7521d2b9 9fb5f25f3b194bfea0d52f0a5a4ace23 {"aliquot_tag": "ALQ_727a97bc", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04269.WXS.Nbc.hg38 C3L-04269 AML WXS buccal_normal CPT0410130001 4f69dcfa-a3db-4857-953a-5f94514efa44_wxs_gdc_realn.bam 32385634097 BAM harmonized CPTAC3 211bca65-45bb-4347-8146-b83f2c4e2222 6e7cd7a7df45e8a4e63b7020f4973a2e {"aliquot_tag": "ALQ_727a97bc", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04269.WXS.Tpb C3L-04269 AML WXS tumor_peripheral_blood CPT0410160002 CPT0410160002.WholeExome.RP-1303.bam 26085113690 BAM submitted_aligned CPTAC3 3520a5c1-99c5-4ee0-9daf-4105e9f6b91a 50676822f5ec75eb4f1e7bb1b41423d4 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04269.WXS.Tpb.hg38 C3L-04269 AML WXS tumor_peripheral_blood CPT0410160002 5429cc08-8a1f-4a73-906e-f4946bddf5ac_wxs_gdc_realn.bam 36054933398 BAM harmonized CPTAC3 d62e5a8b-3ed8-4ce2-a033-ab59310ca232 5f40d7d21b1ac76e205c7b243cf99228 {"aliquot_tag": "ALQ_23934976", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-04270.MethArray.Green.Tbm C3L-04270 AML Methylation_Array tumor_bone_marrow CPT0280070002 205555390157_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 c79bb87d-10cd-4263-bcbe-c3dd46912b9c 51179644a08835eb64d770e57824ff5d {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.MethArray.Red.Tbm C3L-04270 AML Methylation_Array tumor_bone_marrow CPT0280070002 205555390157_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 2131c4cf-9bb7-4e50-9ff4-c55a3d20a584 b12bf643109a82ec24f0423628ae23e2 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.miRNA-Seq.S19_L001_R1.Tbm C3L-04270 AML miRNA-Seq tumor_bone_marrow CPT0280080001 210702_UNC32-K00270_0289_AHKJ22BBXY_TAGCTT_S19_L001_R1_001.unaln.bam 342712818 BAM S19_L001_R1 submitted_unaligned CPTAC3 be69c497-c480-4ffe-ae3b-91417ef83ded ca8bef515c42ddeb266beae32f325a4d {"aliquot_tag": "ALQ_a2a317a9", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.miRNA-Seq.Tbm.hg38 C3L-04270 AML miRNA-Seq tumor_bone_marrow CPT0280080001 320b7272-d132-414e-a9ed-6ffdb0135524_mirnaseq_gdc_realn.bam 381028035 BAM harmonized CPTAC3 ccef8668-ddc3-4e65-8090-596860f8b657 97ad581265cf289a51628a79836ed2e2 {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.RNA-Seq.chimeric.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.chimeric.gdc_realn.bam 122777876 BAM chimeric harmonized CPTAC3 90110308-309a-407b-ae9e-a3a29d495fba cdff05fd21a21cb9deb7e2921816043b {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.RNA-Seq.genomic.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.genomic.gdc_realn.bam 8015174223 BAM genomic harmonized CPTAC3 ddb8174d-4adf-4dbd-8faa-d2fce82e0a68 162e82396a9cbcc55266541f4b0ee5ad {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.RNA-Seq.S22_L006_R1.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R1_001.fastq.gz 4138037151 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 8a3129ee-c1c8-4a42-a263-74e98cb4a75b a648b76c0cc62ea0807da93a039bfc14 {"aliquot_tag": "ALQ_a2a317a9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.RNA-Seq.S22_L006_R2.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R2_001.fastq.gz 4280223869 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 3475f320-39a9-4913-a496-0bf21360a545 e76d769efb4714aa1504753ee8422775 {"aliquot_tag": "ALQ_a2a317a9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.RNA-Seq.transcriptome.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.transcriptome.gdc_realn.bam 9353933846 BAM transcriptome harmonized CPTAC3 d0ffaec8-ac93-4485-8dd4-eefcabcd7dff dd6f83f3476ac7a9f92c52f65fda8a71 {"aliquot_tag": "ALQ_a2a317a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.WGS.Nbc C3L-04270 AML WGS buccal_normal CPT0280050001 CPT0280050001.WholeGenome.RP-2158.bam 53997676579 BAM submitted_aligned CPTAC3 584533ee-c9ac-4508-ba42-e3641671903d 416579009f84791da067f8a73eeec2dc {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04270.WGS.Nbc.hg38 C3L-04270 AML WGS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wgs_gdc_realn.bam 169120568393 BAM harmonized CPTAC3 75406c0c-b54e-40da-8d71-7aebffc242d0 856f71dd38cdbddddca1ba4767db4652 {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04270.WGS.Tbm C3L-04270 AML WGS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeGenome.RP-2158.bam 43565696594 BAM submitted_aligned CPTAC3 c15b0c27-aa8d-4080-8a60-6c8dd5332a22 586e1d53f4c906d14b082abfc5d556da {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.WGS.Tbm.hg38 C3L-04270 AML WGS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wgs_gdc_realn.bam 128554904097 BAM harmonized CPTAC3 a382bf00-ff44-4937-98ed-fc56b0596db2 4634f79d245e41da2592b9a69b141df2 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.WXS.Nbc C3L-04270 AML WXS buccal_normal CPT0280050001 CPT0280050001.WholeExome.RP-1303.bam 24254314387 BAM submitted_aligned CPTAC3 9d05ed59-c2bc-4a16-98e9-3b4dcf49eaef 900cd72e9f0e19c8d3441f1974232c83 {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04270.WXS.Nbc.hg38 C3L-04270 AML WXS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wxs_gdc_realn.bam 33432029614 BAM harmonized CPTAC3 b6bbc306-2ab1-45d3-9d04-6aca54c65c17 50a2da4765827ed63c8c411bf38b2be0 {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04270.WXS.Tbm C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeExome.RP-1303.bam 21736140676 BAM submitted_aligned CPTAC3 778d053c-1d97-4b94-82a5-14abc9ac93e6 8fc5e43233c4fc7240969dc4e576da84 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04270.WXS.Tbm.hg38 C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wxs_gdc_realn.bam 29926952849 BAM harmonized CPTAC3 9373160f-3fdc-4920-8d50-c2ff94a07743 c247b13c7d53eedb4da392bed9fedb01 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04336.MethArray.Green.A C3L-04336 LSCC Methylation_Array tissue_normal CPT0256900006 204372030139_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e5a30652-4ae5-4f37-b136-5861117ba429 f3dc687d652f7979064e2a11dbe626ce {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.MethArray.Green.T C3L-04336 LSCC Methylation_Array tumor CPT0256850006 204372030087_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 33b632d9-99ed-4e15-8709-9b7c0503cc47 7218dc45e4cbfefcb82c755e1e95a880 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.MethArray.Red.A C3L-04336 LSCC Methylation_Array tissue_normal CPT0256900006 204372030139_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 83d66753-5de6-49f6-be0f-917e0870fd75 342c9a485ffd7ea9f15c6b37d0adf736 {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.MethArray.Red.T C3L-04336 LSCC Methylation_Array tumor CPT0256850006 204372030087_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 3b55f254-3278-44a7-8be9-bcc10aff58a2 f5f37536327457a107ba248e0ce73cd7 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.miRNA-Seq.A.hg38 C3L-04336 LSCC miRNA-Seq tissue_normal CPT0256900009 7763789d-e974-4cec-890f-c4a8344986e2_mirnaseq_gdc_realn.bam 269068843 BAM harmonized CPTAC3 d4475d97-3a18-426a-ac3d-5caa6d5581aa 274802b4d66a7b3f70e67a0438d316b5 {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.miRNA-Seq.S2_L007_R1.A C3L-04336 LSCC miRNA-Seq tissue_normal CPT0256900009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACTTGA_S2_L007_R1_001.unaln.bam 240489947 BAM S2_L007_R1 submitted_unaligned CPTAC3 de442dd3-f415-4416-96d0-2b71b960e325 85b540d208975ee5fd2e6cf4604ff4be {"aliquot_tag": "ALQ_43d2a579", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.miRNA-Seq.S8_L006_R1.T C3L-04336 LSCC miRNA-Seq tumor CPT0256850009 200224_UNC31-K00269_0267_AHC722BBXY_ACTTGA_S8_L006_R1_001.unaln.bam 247377140 BAM S8_L006_R1 submitted_unaligned CPTAC3 db3c9223-1cf8-48c4-a112-73b4398856bb 4c87083a0d547701871277bdf70c957e {"aliquot_tag": "ALQ_406ef9ac", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.miRNA-Seq.T.hg38 C3L-04336 LSCC miRNA-Seq tumor CPT0256850009 0e194943-07db-4824-b62f-1d480f2c17ac_mirnaseq_gdc_realn.bam 278844565 BAM harmonized CPTAC3 2f722b20-f229-4687-a80a-24013791a7de 675b92a4f569fdca61c132e0acae5222 {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.RNA-Seq.chimeric.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.chimeric.gdc_realn.bam 78753684 BAM chimeric harmonized CPTAC3 70cf2f19-6d78-46b5-93a5-7e4f0ffde867 838f2371d00ae19fe5bb76f8bbaf3700 {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.RNA-Seq.chimeric.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.chimeric.gdc_realn.bam 57525179 BAM chimeric harmonized CPTAC3 3530bc7b-55c9-4e98-9204-32cef155f83e f4c1acf97f48f0ff8f85170441a7752b {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.RNA-Seq.genomic.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.genomic.gdc_realn.bam 10035592744 BAM genomic harmonized CPTAC3 95235af6-5626-4af9-b8bb-9188c7513bdb e591874883e230127798b33579816270 {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.RNA-Seq.genomic.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.genomic.gdc_realn.bam 9960373804 BAM genomic harmonized CPTAC3 37b617c5-8b05-4d4a-b086-b285b157c848 754a5881a9b30e2c06a5a7a37493fa9d {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.RNA-Seq.S24_L006_R1.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R1_001.fastq.gz 4978146204 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 1956c0ac-22a8-4eaf-b902-60f761cffb68 23e35a17c316aafcd001762a4dfbfa1c {"aliquot_tag": "ALQ_406ef9ac", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.RNA-Seq.S24_L006_R2.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R2_001.fastq.gz 5212057900 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 a9ca1e0c-0d79-4d8a-bc85-fc1efec794d2 6cc1d452194a86574a18815089a75a5a {"aliquot_tag": "ALQ_406ef9ac", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.RNA-Seq.S7_L002_R1.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R1_001.fastq.gz 4978141232 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 1d5e8d44-c758-4c01-856f-923ce90088d9 70fa0b56f324ee773a988e32817bfa96 {"aliquot_tag": "ALQ_43d2a579", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.RNA-Seq.S7_L002_R2.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R2_001.fastq.gz 5495426971 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 bde959a3-48f7-439a-b1ea-2b56936ee3d2 6ca4f07b564944132b9ba88db5f9d5d3 {"aliquot_tag": "ALQ_43d2a579", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.RNA-Seq.transcriptome.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.transcriptome.gdc_realn.bam 11961274851 BAM transcriptome harmonized CPTAC3 cbd93b64-cf8a-4b4d-9e43-27fb019888ba b1b895371306bc31ac83c76451ab198f {"aliquot_tag": "ALQ_43d2a579", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.RNA-Seq.transcriptome.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.transcriptome.gdc_realn.bam 13120410788 BAM transcriptome harmonized CPTAC3 feaa0b0c-f292-4bc4-88b0-a6698013c8ad ac36351d53a56d124c663e9d1e22e89c {"aliquot_tag": "ALQ_406ef9ac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.WGS.N C3L-04336 LSCC WGS blood_normal CPT0257000002 CPT0257000002.WholeGenome.RP-2158.bam 28382645326 BAM submitted_aligned CPTAC3 2ecd0917-d886-4c27-bdf6-120e30b0547a 1779317918fef5d7de564f3e6ac239a1 {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04336.WGS.N.hg38 C3L-04336 LSCC WGS blood_normal CPT0257000002 4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wgs_gdc_realn.bam 84241551453 BAM harmonized CPTAC3 aa673546-1c0d-4508-9ab6-dad3e4b748ae 516cf87116a439381c4bebdb45fbb1ae {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04336.WGS.T C3L-04336 LSCC WGS tumor CPT0256850006 CPT0256850006.WholeGenome.RP-2158.bam 23904262100 BAM submitted_aligned CPTAC3 5c700df8-9626-4edc-91bf-2d4bb64e7e01 a7bbfed150c4fe35569c271aed2452a3 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.WGS.T.hg38 C3L-04336 LSCC WGS tumor CPT0256850006 fe1754f9-bcfe-4701-99e2-50d94e7e8c5c_wgs_gdc_realn.bam 69650090525 BAM harmonized CPTAC3 43875a6f-1286-408a-b54d-150b608901ac cc69219088f916e17128821f2035df75 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.WXS.A C3L-04336 LSCC WXS tissue_normal CPT0256900006 CPT0256900006.WholeExome.RP-1303.bam 23424790332 BAM submitted_aligned CPTAC3 27ef8125-eb08-49ba-8fa4-29506994b11c 1ee228102dd5a40e0a3483dc786aff89 {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.WXS.A.hg38 C3L-04336 LSCC WXS tissue_normal CPT0256900006 327bcd00-054a-47a3-9812-8d6112931bd3_wxs_gdc_realn.bam 33059293041 BAM harmonized CPTAC3 646e6587-213d-4e0c-8b47-0f04891b4c60 02ba325b842bb4e3c7d087edd6e7137d {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04336.WXS.N C3L-04336 LSCC WXS blood_normal CPT0257000002 CPT0257000002.WholeExome.RP-1303.bam 40854463163 BAM submitted_aligned CPTAC3 32bfc1cf-0d5d-46cf-8d68-6c3661a27668 02963ee5bd27c35a19bf0ebd2c862961 {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04336.WXS.N.hg38 C3L-04336 LSCC WXS blood_normal CPT0257000002 4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wxs_gdc_realn.bam 54887897348 BAM harmonized CPTAC3 1a24671b-f4be-4246-a1f1-019bd0be9375 8a9a4e38f2013ef914a96273bb143abc {"aliquot_tag": "ALQ_5578268d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04336.WXS.T C3L-04336 LSCC WXS tumor CPT0256850006 CPT0256850006.WholeExome.RP-1303.bam 18432713807 BAM submitted_aligned CPTAC3 e74c96f3-771d-48ad-b57c-7adf3dfd0a3c 0f1750d62bce0c4899895c1d66c8ac53 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04336.WXS.T.hg38 C3L-04336 LSCC WXS tumor CPT0256850006 fe1754f9-bcfe-4701-99e2-50d94e7e8c5c_wxs_gdc_realn.bam 25248384029 BAM harmonized CPTAC3 2b354936-5716-47c8-b574-3bdb088524be 0417b5466806a882aa3f3617c9ec47a6 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.MethArray.Green.T C3L-04339 GBM Methylation_Array tumor CPT0258090006 204372030024_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 06b7bb69-881a-4d8d-9e69-657c155e681c 470a9ce9da03a235c3a2ca1706d7f695 {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.MethArray.Red.T C3L-04339 GBM Methylation_Array tumor CPT0258090006 204372030024_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 3731cfc1-aeba-4f8d-b51b-acebe911b3cb 92c0ba0cbd2729a623d194e3e7d8c16a {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.miRNA-Seq.S19_L001_R1.T C3L-04339 GBM miRNA-Seq tumor CPT0258090008 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L001_R1_001.unaln.bam 381401337 BAM S19_L001_R1 submitted_unaligned CPTAC3 7ba9728a-8370-4ec2-9202-b4fc621b0e15 2d5ac790dc0407adf0033291cae84f23 {"aliquot_tag": "ALQ_4ef5dd0b", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.miRNA-Seq.T.hg38 C3L-04339 GBM miRNA-Seq tumor CPT0258090008 a135d303-2474-48c4-bff0-0f7b8c8021b6_mirnaseq_gdc_realn.bam 427460534 BAM harmonized CPTAC3 d62b8902-1cb3-446d-afbf-293f4c5acbce 5066381eba57ffcb4a86ad777630ad3f {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.RNA-Seq.chimeric.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.chimeric.gdc_realn.bam 23661139 BAM chimeric harmonized CPTAC3 88dceb91-b202-4f33-b2b7-d9b37241e636 a74276df3be49468dfd2777f91f71e90 {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.RNA-Seq.genomic.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.genomic.gdc_realn.bam 5987088707 BAM genomic harmonized CPTAC3 6dbbf2ac-c081-4485-aa3d-f09702f1f19f ddfb6fe472c3abd412b264b4027ec6cb {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.RNA-Seq.S16_L004_R1.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R1_001.fastq.gz 2500941440 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 c6a9244a-4ab2-4f78-be63-b74401e4b903 66a2a3ac3cec1d5cf11e3c01f94ec89f {"aliquot_tag": "ALQ_4ef5dd0b", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.RNA-Seq.S16_L004_R2.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 1ad6b56f-857b-4e87-ba96-77141a60b898 5d6636c43070a2cacdb4285e10f1ed91 {"aliquot_tag": "ALQ_4ef5dd0b", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.RNA-Seq.transcriptome.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.transcriptome.gdc_realn.bam 7799753332 BAM transcriptome harmonized CPTAC3 19b1420f-8242-472c-95fb-e6e4db6e6a73 339f8c9e1ea1e036e2b4da1ac35528a0 {"aliquot_tag": "ALQ_4ef5dd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.WGS.N C3L-04339 GBM WGS blood_normal CPT0258190002 CPT0258190002.WholeGenome.RP-2158.bam 25848841555 BAM submitted_aligned CPTAC3 1afa5fa1-59fe-4184-8c5e-e6d57323443d 38ba15e16722fdec5cae606b5533a243 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04339.WGS.N.hg38 C3L-04339 GBM WGS blood_normal CPT0258190002 33f46088-32c6-48b4-8a6b-2290453f2095_wgs_gdc_realn.bam 76854036007 BAM harmonized CPTAC3 a78992b6-5d44-4e49-ba64-f99c06d9700e 898dc9eba69c7828d56ea0a380681697 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04339.WGS.T C3L-04339 GBM WGS tumor CPT0258090006 CPT0258090006.WholeGenome.RP-2158.bam 27146278918 BAM submitted_aligned CPTAC3 48351d83-cc2f-4826-8731-0830df0aa09c ee2ec8e19fa8e277b6ece8d424b9d350 {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.WGS.T.hg38 C3L-04339 GBM WGS tumor CPT0258090006 ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wgs_gdc_realn.bam 80406894411 BAM harmonized CPTAC3 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 c8c073518bf0dd19165be93e57213015 {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.WXS.N C3L-04339 GBM WXS blood_normal CPT0258190002 CPT0258190002.WholeExome.RP-1303.bam 20907651385 BAM submitted_aligned CPTAC3 909af21e-8e05-49c8-b296-9dd8a03ebe9f a5598640185818bd449a9199291a3197 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04339.WXS.N.hg38 C3L-04339 GBM WXS blood_normal CPT0258190002 33f46088-32c6-48b4-8a6b-2290453f2095_wxs_gdc_realn.bam 28408035993 BAM harmonized CPTAC3 210f66ea-881d-49ae-b32c-3d39ddac7941 3c1b5c2cd3e9a08e32e814fea4a26290 {"aliquot_tag": "ALQ_657ce7b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04339.WXS.T C3L-04339 GBM WXS tumor CPT0258090006 CPT0258090006.WholeExome.RP-1303.bam 22723005441 BAM submitted_aligned CPTAC3 8e3ea70c-2461-4d72-9a04-9e06088513c4 2a9af14ae1d392fba85d3cab7f2c29cb {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04339.WXS.T.hg38 C3L-04339 GBM WXS tumor CPT0258090006 ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wxs_gdc_realn.bam 32992537997 BAM harmonized CPTAC3 d105a1df-c44b-46eb-aba8-6bd7b2a87af5 47d3817ccfd4610a39c9bf5cecfa131d {"aliquot_tag": "ALQ_a94df00c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04354.MethArray.Green.A C3L-04354 HNSCC Methylation_Array tissue_normal CPT0243140010 203220070102_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 284f369f-50bf-4ac8-9bfb-dbd7f09d1b30 9da7752264459379f5827322885b17dd {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.MethArray.Green.T C3L-04354 HNSCC Methylation_Array tumor CPT0243090006 203271750047_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2e6836a3-25e3-4f23-aa87-d2e344b21c63 a99a2ee2dd7ccf0e46661411e543d628 {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.MethArray.Red.A C3L-04354 HNSCC Methylation_Array tissue_normal CPT0243140010 203220070102_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 a86adc96-b0e3-49f4-b0a6-8a6c71db02a3 0ab69e3fd17bfafc920318adb8af4385 {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.MethArray.Red.T C3L-04354 HNSCC Methylation_Array tumor CPT0243090006 203271750047_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 2bfa27e2-b085-4012-ae75-49da541ca4c6 2ef5180935354bbffdacb7d95ce00b2c {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.miRNA-Seq.A.hg38 C3L-04354 HNSCC miRNA-Seq tissue_normal CPT0243140007 734a8fea-0ec1-4d91-9293-d549a62633c7_mirnaseq_gdc_realn.bam 291587137 BAM harmonized CPTAC3 8b6c72ef-bc17-4023-aec2-eec821936200 e49726dc31266d5820dc7a62e7efbaee {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.miRNA-Seq.S40_L006_R1.A C3L-04354 HNSCC miRNA-Seq tissue_normal CPT0243140007 190228_UNC32-K00270_0151_AHYLY3BBXX_CTCAGA_S40_L006_R1_001.unaln.bam 262121373 BAM S40_L006_R1 submitted_unaligned CPTAC3 bbf7f302-acb3-4b83-bb13-3bdfa506db9f 96b79d38c813471929dffebeacde4c3c {"aliquot_tag": "ALQ_232b83ea", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.miRNA-Seq.S43_L004_R1.T C3L-04354 HNSCC miRNA-Seq tumor CPT0243090009 190228_UNC32-K00270_0151_AHYLY3BBXX_TACAGC_S43_L004_R1_001.unaln.bam 288732779 BAM S43_L004_R1 submitted_unaligned CPTAC3 822fd66c-7cdc-4ca8-ab36-2e8e750f28f1 d67f99438222ced85b8e81299c818b8f {"aliquot_tag": "ALQ_f75fb9f9", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.miRNA-Seq.T.hg38 C3L-04354 HNSCC miRNA-Seq tumor CPT0243090009 cb1bc68f-be92-4527-8b41-a381fddc2317_mirnaseq_gdc_realn.bam 315428393 BAM harmonized CPTAC3 a2a6b69c-e586-499c-8df2-f1c9d5b1b9ac a525b50b409a1c2eaadb416a51e1bf3f {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.RNA-Seq.chimeric.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.chimeric.gdc_realn.bam 31274068 BAM chimeric harmonized CPTAC3 a82d0a28-1641-4666-85ec-93059ac64ce4 3e1e4152100922fd2aa20269de00f67c {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.RNA-Seq.chimeric.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.chimeric.gdc_realn.bam 250309929 BAM chimeric harmonized CPTAC3 aa693b68-0ae3-4b7d-b704-5d0346b60e80 a493ccce9429db024b27f57f63e689eb {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.RNA-Seq.genomic.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.genomic.gdc_realn.bam 7988415034 BAM genomic harmonized CPTAC3 ed21d1fd-e034-4188-a834-8f00c23bb12b 9c4ec8741e7099de64c3e1216c503f35 {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.RNA-Seq.genomic.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.genomic.gdc_realn.bam 9068611099 BAM genomic harmonized CPTAC3 a3b0430d-6d17-4ffb-ad75-af605754314d 26ca893764b20a4d8fcec34da6bf3b6a {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.RNA-Seq.S16_L004_R1.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R1_001.fastq.gz 3584955086 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 e239027f-e025-487d-abcc-ff9de8e34f80 60681ed8f40f10e8e3a6f176e05fa40b {"aliquot_tag": "ALQ_232b83ea", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.RNA-Seq.S16_L004_R2.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R2_001.fastq.gz 4145360974 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 3268285d-843c-4702-ae5a-80b8964dda0c 4e96b76c7f6398cfa221a6e1c8cfd82b {"aliquot_tag": "ALQ_232b83ea", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.RNA-Seq.S1_L001_R1.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4410111059 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 509c74b9-0387-4e6e-9a34-df82a0e21c15 12139510fc810c5dcc0e8d660320dbc7 {"aliquot_tag": "ALQ_f75fb9f9", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.RNA-Seq.S1_L001_R2.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4794346110 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 2d2bdec4-4dc8-4305-bca9-d20ad509cfbb c907ce05d3f15d44b9871d2946fae84e {"aliquot_tag": "ALQ_f75fb9f9", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.RNA-Seq.transcriptome.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.transcriptome.gdc_realn.bam 10682719052 BAM transcriptome harmonized CPTAC3 d1c1847f-b2cc-4a35-ade2-0d3fd90b37b7 908880258f5542a849f27a0517fb6049 {"aliquot_tag": "ALQ_232b83ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.RNA-Seq.transcriptome.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.transcriptome.gdc_realn.bam 11087872998 BAM transcriptome harmonized CPTAC3 973485ca-c324-4033-bed0-0d32c528c3d2 f1aa8f8a222bbb7cf40445bac22b12b9 {"aliquot_tag": "ALQ_f75fb9f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.WGS.N C3L-04354 HNSCC WGS blood_normal CPT0243240002 CPT0243240002.WholeGenome.RP-1303.bam 70599957432 BAM submitted_aligned CPTAC3 3507aa10-8711-4961-bcb4-dc51bcf523c9 d8fb4f1513a926ecaf68024e7e31bb16 {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04354.WGS.N.hg38 C3L-04354 HNSCC WGS blood_normal CPT0243240002 18200700-e8f1-4f3e-a1ab-fd3d5fb89aef_wgs_gdc_realn.bam 104372983227 BAM harmonized CPTAC3 245df080-9e1b-4323-a775-2f45d179785d b288426087dc3023526d1e230eca25ea {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04354.WGS.T C3L-04354 HNSCC WGS tumor CPT0243090006 CPT0243090006.WholeGenome.RP-1303.bam 80228877144 BAM submitted_aligned CPTAC3 1be7f8e1-988a-4149-a9fb-a95d0fea0b27 bf4cab090bd70aae2ecf1457d701e504 {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.WGS.T.hg38 C3L-04354 HNSCC WGS tumor CPT0243090006 ff57bec1-fdf3-4efe-aaae-81d5f465ea8d_wgs_gdc_realn.bam 120529725476 BAM harmonized CPTAC3 2288df6f-b933-4ec3-a47d-72802a81523d 4286be616c77b4c72d4dca7ed7b338ad {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.WXS.A C3L-04354 HNSCC WXS tissue_normal CPT0243140010 CPT0243140010.WholeExome.RP-1303.bam 26917454839 BAM submitted_aligned CPTAC3 44642e47-482e-4ff0-864e-f9f1f83272fb 4b891e024d1fe2c515762ed18a81c00d {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.WXS.A.hg38 C3L-04354 HNSCC WXS tissue_normal CPT0243140010 2a8e88a7-eeda-4085-9852-611491dd71f0_wxs_gdc_realn.bam 37657990125 BAM harmonized CPTAC3 95da5f84-be26-420f-96ae-8c2f3022b09f a704637a693bb473aa7fac17f2d5d8e4 {"aliquot_tag": "ALQ_a4542708", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04354.WXS.N C3L-04354 HNSCC WXS blood_normal CPT0243240002 CPT0243240002.WholeExome.RP-1303.bam 22938774940 BAM submitted_aligned CPTAC3 7aa51968-5a8e-4c97-a4e7-9867d568ee10 e88ef4a9407396853f840aaa64699d3f {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04354.WXS.N.hg38 C3L-04354 HNSCC WXS blood_normal CPT0243240002 18200700-e8f1-4f3e-a1ab-fd3d5fb89aef_wxs_gdc_realn.bam 32082794930 BAM harmonized CPTAC3 1a7fe815-6001-4550-b337-5883804884d4 635c0b852d0504edade62db89a0274d8 {"aliquot_tag": "ALQ_d5d505cb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04354.WXS.T C3L-04354 HNSCC WXS tumor CPT0243090006 CPT0243090006.WholeExome.RP-1303.bam 26454600606 BAM submitted_aligned CPTAC3 9efe2ca7-5ade-42d4-a8a3-1929f1f976bc 696f22885d18ea374788091d3941d798 {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04354.WXS.T.hg38 C3L-04354 HNSCC WXS tumor CPT0243090006 ff57bec1-fdf3-4efe-aaae-81d5f465ea8d_wxs_gdc_realn.bam 35819125417 BAM harmonized CPTAC3 36098590-cd66-4240-83d5-39a28eaa73a3 bd02d5bb500ee19d45cd4c1a8235bead {"aliquot_tag": "ALQ_67e0a468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04359.MethArray.Green.T C3L-04359 GBM Methylation_Array tumor CPT0243280006 204372030022_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 1bb74675-9bdd-4a36-a0d7-561e1e6782f0 5047c4f7120da816a9edd7e9ad3593ee {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.MethArray.Red.T C3L-04359 GBM Methylation_Array tumor CPT0243280006 204372030022_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 43e71864-4b28-4f3c-badd-e8e4f50058a8 764ab25aecf9a10b560773c8220249a5 {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.miRNA-Seq.S30_L002_R1.T C3L-04359 GBM miRNA-Seq tumor CPT0243280009 200403_UNC31-K00269_0274_AHCF7GBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 309843615 BAM S30_L002_R1 submitted_unaligned CPTAC3 5187c868-9062-449b-a2dc-51a88211022a 88c1f4f1a53f9077ac7405480a88f8f4 {"aliquot_tag": "ALQ_87f73142", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.miRNA-Seq.T.hg38 C3L-04359 GBM miRNA-Seq tumor CPT0243280009 69909312-f440-473d-bea5-cb1a6f0da238_mirnaseq_gdc_realn.bam 361913473 BAM harmonized CPTAC3 627019e3-a8ed-43a8-93c3-f84c81f0c47e 560e381590dc5332cef08fef439d68d6 {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.RNA-Seq.chimeric.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.chimeric.gdc_realn.bam 200485178 BAM chimeric harmonized CPTAC3 04bda66f-0819-487f-a037-5e55c1c43fb4 ff572dc975efd980d7416302599616f0 {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.RNA-Seq.genomic.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.genomic.gdc_realn.bam 8261686378 BAM genomic harmonized CPTAC3 c819ba61-5163-4e38-b2eb-acb880128812 6ef7d6167d14b480b3fbff6e8f114efe {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.RNA-Seq.S10_L008_R1.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 b42d0852-cae1-4758-a678-bc012f13aea9 a93e8e0b3921e78abcf0445d4a1b8ed2 {"aliquot_tag": "ALQ_87f73142", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.RNA-Seq.S10_L008_R2.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 88640d20-f2e8-42d8-a9aa-eb03821c31f7 74c62c6dffbfe2515f03bdece6dbe8b6 {"aliquot_tag": "ALQ_87f73142", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.RNA-Seq.transcriptome.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.transcriptome.gdc_realn.bam 8170499777 BAM transcriptome harmonized CPTAC3 8968fe56-0606-4c3b-bf62-7dac674d51ce 74e18cad0ca92b1a79eb9cb0eb750d75 {"aliquot_tag": "ALQ_87f73142", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.WGS.N C3L-04359 GBM WGS blood_normal CPT0243350002 CPT0243350002.WholeGenome.RP-2158.bam 25332896750 BAM submitted_aligned CPTAC3 5b4ed69a-9a13-44a2-b07e-e2ee7b686d46 0c6178488a46048d304b5ebdad803264 {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04359.WGS.N.hg38 C3L-04359 GBM WGS blood_normal CPT0243350002 d7706205-c0e2-4a84-a0d3-5496598cbf10_wgs_gdc_realn.bam 73863141089 BAM harmonized CPTAC3 a64412f1-74c9-486b-98a7-9eba8d21f9fb 41f89f7e23e3a576a440b798399b2c61 {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04359.WGS.T C3L-04359 GBM WGS tumor CPT0243280006 CPT0243280006.WholeGenome.RP-2158.bam 23903590429 BAM submitted_aligned CPTAC3 8ed53d0f-a2e7-4652-bbe9-776bc915a317 617a44eda943cf2649a780e494e6ae5b {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.WGS.T.hg38 C3L-04359 GBM WGS tumor CPT0243280006 7dbf52e5-6cf7-44bf-b211-2941a5917899_wgs_gdc_realn.bam 70650337535 BAM harmonized CPTAC3 d7d2db0a-f513-4241-9a62-c47f70046392 9296a7e66c1950e35fb1ea83a8ccd26e {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.WXS.N C3L-04359 GBM WXS blood_normal CPT0243350002 CPT0243350002.WholeExome.RP-1303.bam 32069118972 BAM submitted_aligned CPTAC3 10b4ba0a-fec2-41f2-936d-4dffb4bddd33 8893841f2b964d1d9b4373b2c9ec7f96 {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04359.WXS.N.hg38 C3L-04359 GBM WXS blood_normal CPT0243350002 d7706205-c0e2-4a84-a0d3-5496598cbf10_wxs_gdc_realn.bam 43853685171 BAM harmonized CPTAC3 0a9ab409-f15c-49f9-b566-0c21bbedb03d f24778a883f562cb08e7ee954fd1703a {"aliquot_tag": "ALQ_23e9ffde", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04359.WXS.T C3L-04359 GBM WXS tumor CPT0243280006 CPT0243280006.WholeExome.RP-1303.bam 29459091783 BAM submitted_aligned CPTAC3 24e7e71e-5588-4fb1-8837-044df6abd811 6a6acd19425e1ffc965882acda1882c1 {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04359.WXS.T.hg38 C3L-04359 GBM WXS tumor CPT0243280006 7dbf52e5-6cf7-44bf-b211-2941a5917899_wxs_gdc_realn.bam 40884138168 BAM harmonized CPTAC3 5308095c-11ed-4bf5-a175-0a632a0a250a 1993d9dc03651b3fbdfb0fea8e4f3a8f {"aliquot_tag": "ALQ_17482cd3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.MethArray.Green.A C3L-04361 LSCC Methylation_Array tissue_normal CPT0243460006 204367490090_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dc1f0b25-ec54-4692-9796-618a539ca955 5fb57657dfc7bc81695734f26f7134fd {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.MethArray.Green.T C3L-04361 LSCC Methylation_Array tumor CPT0243370006 204372030024_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 bc0761d7-feea-4e10-9ce7-9cd1fa30e3c0 514fa132b94be9de06606392fb993e73 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.MethArray.Red.A C3L-04361 LSCC Methylation_Array tissue_normal CPT0243460006 204367490090_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 4d3d80a2-2508-40ab-b5d5-21d4d26c2e24 f7b7c0553e73d500239036234f27d2c9 {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.MethArray.Red.T C3L-04361 LSCC Methylation_Array tumor CPT0243370006 204372030024_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 e2946636-c143-4dc4-892d-d61c7eb1c651 be2e936ca81ddeabcb371c1dbcc7d772 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.miRNA-Seq.A.hg38 C3L-04361 LSCC miRNA-Seq tissue_normal CPT0243460013 9b592bbe-1949-463a-a615-aa7f0ccab8d1_mirnaseq_gdc_realn.bam 191108749 BAM harmonized CPTAC3 6bbdf0a6-ad0e-45ec-8d0e-82972ba26bad 9be91afd2928a0a30907293bd23594ce {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.miRNA-Seq.S10_L007_R1.A C3L-04361 LSCC miRNA-Seq tissue_normal CPT0243460013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGTACG_S10_L007_R1_001.unaln.bam 166756425 BAM S10_L007_R1 submitted_unaligned CPTAC3 de525a6b-07cf-4ca3-bee9-107791f0acb4 0083b624cdf49fdbf256418316ac08c1 {"aliquot_tag": "ALQ_1750b461", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.miRNA-Seq.S37_L007_R1.T C3L-04361 LSCC miRNA-Seq tumor CPT0243370009 200224_UNC31-K00269_0267_AHC722BBXY_CGGAAT_S37_L007_R1_001.unaln.bam 274965317 BAM S37_L007_R1 submitted_unaligned CPTAC3 93aad943-4444-4144-80e7-27c990f1e253 f4fd7d3834377afb93c0d4ab388f9562 {"aliquot_tag": "ALQ_cefb7536", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.miRNA-Seq.T.hg38 C3L-04361 LSCC miRNA-Seq tumor CPT0243370009 7145f826-1435-4daa-a19a-d797720da78c_mirnaseq_gdc_realn.bam 297664255 BAM harmonized CPTAC3 aa29fda2-c6b4-4237-954a-d45c2fa619cf 26095f928ec6bbe2f77861c2c0c06ee7 {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.RNA-Seq.chimeric.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.chimeric.gdc_realn.bam 72961346 BAM chimeric harmonized CPTAC3 762df6c4-8d05-40a5-99b1-ad58c0061bc0 17eb286de59c1b2b457e6bcb8b6404da {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.RNA-Seq.chimeric.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.chimeric.gdc_realn.bam 35108731 BAM chimeric harmonized CPTAC3 f91c2353-2b7a-4f48-9adf-64246f959147 1830fee39dda990567c2083fade83ed3 {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.RNA-Seq.genomic.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.genomic.gdc_realn.bam 7328783790 BAM genomic harmonized CPTAC3 77bdce50-6074-4748-833f-ad2b2b4fc387 8a82d59e3a2fe4a44604d4abe7142d2d {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.RNA-Seq.genomic.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.genomic.gdc_realn.bam 7402836849 BAM genomic harmonized CPTAC3 ce131bfc-8f1d-4c9b-9305-632518484c9d 54422e754375844484a4d58275c6673c {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.RNA-Seq.S22_L006_R1.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R1_001.fastq.gz 3528552695 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 36a67212-56b0-4ecc-a9e5-3f1399f8df22 c5f1065efddb4319bee1969411353dfb {"aliquot_tag": "ALQ_1750b461", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.RNA-Seq.S22_L006_R2.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R2_001.fastq.gz 4006020067 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 0bddc86c-98fe-4302-a0c2-267cea3c03a0 050ed390294d9a31406b6972beea6894 {"aliquot_tag": "ALQ_1750b461", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.RNA-Seq.S5_L002_R1.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R1_001.fastq.gz 3669104306 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 4319f038-f4b4-4273-8fa2-ee5269adce7c 54886dc0f2c7dbab746e9e19c41a0427 {"aliquot_tag": "ALQ_cefb7536", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.RNA-Seq.S5_L002_R2.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R2_001.fastq.gz 3902034327 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 0dc815c3-389f-411d-920f-9290badb83e2 bc2c04722b790505975e47420120ab60 {"aliquot_tag": "ALQ_cefb7536", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.RNA-Seq.transcriptome.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.transcriptome.gdc_realn.bam 9285032794 BAM transcriptome harmonized CPTAC3 a241ad65-f2bb-4de1-b7bc-86b7bb5d7692 ee6ddb08b3ac4b7354be6a40329fe4d3 {"aliquot_tag": "ALQ_1750b461", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.RNA-Seq.transcriptome.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.transcriptome.gdc_realn.bam 9700057148 BAM transcriptome harmonized CPTAC3 fccea160-9a41-4700-b915-ce03c26ece88 11de24e5e4f68086df1d599d59491077 {"aliquot_tag": "ALQ_cefb7536", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.WGS.N C3L-04361 LSCC WGS blood_normal CPT0243530002 CPT0243530002.WholeGenome.RP-2158.bam 33559873290 BAM submitted_aligned CPTAC3 406c524c-0315-4786-a890-b57094c79f47 88a5c1123df8df294911a3be7a47eb3b {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04361.WGS.N C3L-04361 LSCC WGS blood_normal CPT0243530002 CPT0243530002.WholeGenome.RP-2158.bam 33616871030 BAM submitted_aligned CPTAC3 b2ac9f92-0aa9-476e-a9aa-667db7ee8ef5 0ede51828c14f436ec326f867307cf32 {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-04361.WGS.N.hg38 C3L-04361 LSCC WGS blood_normal CPT0243530002 84411001-c027-4951-b815-ff6ed4482914_wgs_gdc_realn.bam 100080652674 BAM harmonized CPTAC3 62d41a03-8349-40fa-bd86-f48e41d8d9b2 9c2fdc4b28f543952b6c4ce11160f1bd {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04361.WGS.T C3L-04361 LSCC WGS tumor CPT0243370006 CPT0243370006.WholeGenome.RP-2158.bam 30172514538 BAM submitted_aligned CPTAC3 6ff02772-d4d3-48f6-9125-618dcab976ee d59c9fa3400363d480992a274a9b3b46 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.WGS.T.hg38 C3L-04361 LSCC WGS tumor CPT0243370006 6eb8c4ee-7977-49ea-9e1f-dc640032b670_wgs_gdc_realn.bam 88686010736 BAM harmonized CPTAC3 8f462f6a-1d87-4669-bd8d-c4a32b90af14 a73c67e18f21095064fa75b664e50611 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.WXS.A C3L-04361 LSCC WXS tissue_normal CPT0243460006 CPT0243460006.WholeExome.RP-1303.bam 18648176730 BAM submitted_aligned CPTAC3 4cad459b-4fbc-4e9d-9155-c2470d949270 3d164599bdab9fcfcfb344edf20793c9 {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.WXS.A.hg38 C3L-04361 LSCC WXS tissue_normal CPT0243460006 3455f00f-6424-4db9-9aaa-a625b05f0be4_wxs_gdc_realn.bam 26362204751 BAM harmonized CPTAC3 7cb57aa7-cce1-4001-b899-5c91630f9610 ce13d8f1cf8f4605deab1bd95c65a63a {"aliquot_tag": "ALQ_7e2171af", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04361.WXS.N C3L-04361 LSCC WXS blood_normal CPT0243530002 CPT0243530002.WholeExome.RP-1303.bam 26739372608 BAM submitted_aligned CPTAC3 35a1cd2a-65d5-4e0c-865e-d8798a3fe512 3a0ae302f586954fd8b47b51c1ba28c9 {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04361.WXS.N.hg38 C3L-04361 LSCC WXS blood_normal CPT0243530002 84411001-c027-4951-b815-ff6ed4482914_wxs_gdc_realn.bam 36559856409 BAM harmonized CPTAC3 979dcfe7-ebb4-48a6-86da-f904b6fcbd94 4fe8b323831d9eb72bff1a0513302bbe {"aliquot_tag": "ALQ_7af0e963", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04361.WXS.T C3L-04361 LSCC WXS tumor CPT0243370006 CPT0243370006.WholeExome.RP-1303.bam 23398349836 BAM submitted_aligned CPTAC3 711f72d8-f9a8-436f-829e-57172f3a0bf8 22a21baec8edd9d18e88cc6ff1bc2493 {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04361.WXS.T.hg38 C3L-04361 LSCC WXS tumor CPT0243370006 6eb8c4ee-7977-49ea-9e1f-dc640032b670_wxs_gdc_realn.bam 32028750268 BAM harmonized CPTAC3 a4444e1f-5b3f-4ad3-a0e2-5105dd2eb569 b5fbedcc945fd35b63155943eb3ce7df {"aliquot_tag": "ALQ_5e4468a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.MethArray.Green.T C3L-04362 GBM Methylation_Array tumor CPT0233810006 204930640082_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b27baa7f-35f9-4ba4-a8fc-da2c82adbb17 dd7fabf5dd42a5ac077537388d6d224d {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.MethArray.Red.T C3L-04362 GBM Methylation_Array tumor CPT0233810006 204930640082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 46aa5bb3-a8e5-4be6-a992-d220a0051db8 e63a12c1f80f0a8320840d0367dd11c2 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.miRNA-Seq.S25_L002_R1.T C3L-04362 GBM miRNA-Seq tumor CPT0233810012 200403_UNC31-K00269_0274_AHCF7GBBXY_ATCACG_S25_L002_R1_001.unaln.bam 218585221 BAM S25_L002_R1 submitted_unaligned CPTAC3 74efb625-7e6f-4645-b8cf-38bef59d3b3e badbf1629cee3e520add04bdba9f164d {"aliquot_tag": "ALQ_af709185", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.miRNA-Seq.T.hg38 C3L-04362 GBM miRNA-Seq tumor CPT0233810012 dad677bc-13f3-463b-8645-8b0d2b7522a1_mirnaseq_gdc_realn.bam 243210995 BAM harmonized CPTAC3 a506ff9c-db7b-44b2-a981-d3b199e42133 54435d3e81c607640a96488e6293fe91 {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.RNA-Seq.chimeric.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.chimeric.gdc_realn.bam 297523829 BAM chimeric harmonized CPTAC3 4dc30a35-562b-4071-bca2-05cb8f375176 74e42efee53e0e9113b7eceb5117d8f9 {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.RNA-Seq.genomic.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.genomic.gdc_realn.bam 9085394425 BAM genomic harmonized CPTAC3 de450457-9a42-40e9-be64-95add2880609 b67143e7ee042b77147dafb6c86a9b7f {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.RNA-Seq.S5_L007_R1.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ S5_L007_R1 submitted_unaligned CPTAC3 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c 3b96f98595354bd05237c4cfa1d3f108 {"aliquot_tag": "ALQ_af709185", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.RNA-Seq.S5_L007_R2.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ S5_L007_R2 submitted_unaligned CPTAC3 710ec59e-1735-4dd5-ba70-ce35329cac5c b0071d3c6aaf2cd5b9f8c29fcb69096d {"aliquot_tag": "ALQ_af709185", "sample": "S5", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.RNA-Seq.transcriptome.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.transcriptome.gdc_realn.bam 8945422143 BAM transcriptome harmonized CPTAC3 dbf250eb-3831-4387-a93e-50a63033bd14 9c94adb46e62f1ef6b65c117caf0c5fc {"aliquot_tag": "ALQ_af709185", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.WGS.N C3L-04362 GBM WGS blood_normal CPT0233870002 CPT0233870002.WholeGenome.RP-2158.bam 21818987189 BAM submitted_aligned CPTAC3 48b7e473-ab3c-4dd1-85a5-170e3044b384 84ff0eb41d5d02f3b641ec787b84dec0 {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04362.WGS.N.hg38 C3L-04362 GBM WGS blood_normal CPT0233870002 6b29a573-c2f6-4614-9f25-14c918babfa8_wgs_gdc_realn.bam 62812379070 BAM harmonized CPTAC3 1ac3d361-eef2-4263-85c2-f8748a9379cf e9aca33ad0448904c426468091283757 {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04362.WGS.T C3L-04362 GBM WGS tumor CPT0233810006 CPT0233810006.WholeGenome.RP-2158.bam 25430839932 BAM submitted_aligned CPTAC3 83bea774-1862-4ec9-8f58-e724421f7f1f cb972885ed82534ba94d66f4a5708866 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.WGS.T.hg38 C3L-04362 GBM WGS tumor CPT0233810006 54bcff95-090d-41c1-92c6-66140f4b3ab9_wgs_gdc_realn.bam 73951272849 BAM harmonized CPTAC3 dddd8326-8131-4431-8f69-3bb571ce57e9 7a58c50af833f4a7908c947307e7e476 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.WXS.N C3L-04362 GBM WXS blood_normal CPT0233870002 CPT0233870002.WholeExome.RP-1303.bam 34607798389 BAM submitted_aligned CPTAC3 8c1fda25-6db9-4fef-abce-0bd6d84af2c5 27158bc936c4061b13b5aea3f4841f4c {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04362.WXS.N.hg38 C3L-04362 GBM WXS blood_normal CPT0233870002 6b29a573-c2f6-4614-9f25-14c918babfa8_wxs_gdc_realn.bam 47074453455 BAM harmonized CPTAC3 39a56545-fb06-4f46-bec5-44025a89bc72 8a5d8cd6cf8e31c5ebbcc7cfd6f85e89 {"aliquot_tag": "ALQ_392b5564", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04362.WXS.T C3L-04362 GBM WXS tumor CPT0233810006 CPT0233810006.WholeExome.RP-1303.bam 22808134674 BAM submitted_aligned CPTAC3 f329c74e-37e8-4d8b-b491-2cce7ee8954b bb48500a97d17de8a08e535ba8972a65 {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04362.WXS.T.hg38 C3L-04362 GBM WXS tumor CPT0233810006 54bcff95-090d-41c1-92c6-66140f4b3ab9_wxs_gdc_realn.bam 32536843115 BAM harmonized CPTAC3 9777e76d-b1b6-4f1d-b8d7-592e2e538b4b fd285a4367525fc4fbb73283e749d5ac {"aliquot_tag": "ALQ_b10664dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04365.MethArray.Green.A C3L-04365 LUAD Methylation_Array tissue_normal CPT0243620006 203561620008_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 edfd76df-75d4-4c67-a864-6a49c47596ab c903774c00f60317bcd9103d15521d4f {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.MethArray.Green.T C3L-04365 LUAD Methylation_Array tumor CPT0243560007 203561450027_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 175ed898-0663-4be9-a17c-14d56a06ff0d d8d9c2a3c98499cc6760100217afd221 {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.MethArray.Red.A C3L-04365 LUAD Methylation_Array tissue_normal CPT0243620006 203561620008_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 33f98e53-0b48-4222-8a2b-e98561ade887 6483bc2f53c88f052fe1c0ef14faf1e7 {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.MethArray.Red.T C3L-04365 LUAD Methylation_Array tumor CPT0243560007 203561450027_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 1a62b9cb-2c5d-4b8c-a860-f8c666ac3188 9b7f0c14329cb37f7929f33a04f1a417 {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.miRNA-Seq.A.hg38 C3L-04365 LUAD miRNA-Seq tissue_normal CPT0243620009 1e8acd45-417c-446f-86a1-284eb1f05adf_mirnaseq_gdc_realn.bam 220303342 BAM harmonized CPTAC3 cadbdf13-71ad-4e13-8147-288251fb553e ffabedb43f0bdeab308c5723f09d7614 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.miRNA-Seq.S34_L006_R1.A C3L-04365 LUAD miRNA-Seq tissue_normal CPT0243620009 190722_UNC31-K00269_0234_AH7VGTBBXY_GACGAC_S34_L006_R1_001.unaln.bam 196331321 BAM S34_L006_R1 submitted_unaligned CPTAC3 0ccf2a60-7894-4f27-8b02-351df62d628c 8a5715d7867855d02c084f91051158f8 {"aliquot_tag": "ALQ_56d66bf5", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.miRNA-Seq.S42_L007_R1.T C3L-04365 LUAD miRNA-Seq tumor CPT0243560010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGATGT_S42_L007_R1_001.unaln.bam 192088467 BAM S42_L007_R1 submitted_unaligned CPTAC3 d1523248-e71d-4153-9eb1-e8fc5bc728e6 c96167ec3a1da776f14ead5538bbdf1e {"aliquot_tag": "ALQ_4505367e", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.miRNA-Seq.T.hg38 C3L-04365 LUAD miRNA-Seq tumor CPT0243560010 7a7a0e8c-6d93-4b0c-8575-5dca4d719703_mirnaseq_gdc_realn.bam 209739877 BAM harmonized CPTAC3 56d5f03d-1cee-4d31-93a3-471bb66ce1fc 4ce586629031de1a2dbf711f819c77c1 {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.RNA-Seq.chimeric.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.chimeric.gdc_realn.bam 42366532 BAM chimeric harmonized CPTAC3 cfcdcc59-2b93-4a59-99ad-07bed1415d9e 764a01c473d6064f2ec3f9b9101ca4f7 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.RNA-Seq.chimeric.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.chimeric.gdc_realn.bam 48412560 BAM chimeric harmonized CPTAC3 fa48c88a-5d54-49e2-84cf-9f5186373e79 084ef47d3b2523c996eb48d471a80bdd {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.RNA-Seq.genomic.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.genomic.gdc_realn.bam 18111332381 BAM genomic harmonized CPTAC3 f30af778-844b-40a4-8014-c5addf8d99e8 590c6fa938ac85dfed78af85e6f46f55 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.RNA-Seq.genomic.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.genomic.gdc_realn.bam 10137535266 BAM genomic harmonized CPTAC3 87f3a04d-49c6-480a-9b75-7f2ba294daa6 0bd893defa60d1b0e9e99540dbc3035b {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.RNA-Seq.S32_L008_R1.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R1_001.fastq.gz 4657284691 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 c4bfca38-143c-4f88-b32c-7e398e7bfa49 b39845ad230f086b63073c6420610dee {"aliquot_tag": "ALQ_4505367e", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.RNA-Seq.S32_L008_R2.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R2_001.fastq.gz 5130280500 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 c15c72fa-9846-4df6-9322-f8ee76f8731d a9e6846a8aea05fd973d85dbd3cfd1c8 {"aliquot_tag": "ALQ_4505367e", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.RNA-Seq.S6_L002_R1.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 5996872719 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 bc53dff1-6948-4f36-9950-acd8af23606b c1ff96428c84d1e5c75c350a72a55837 {"aliquot_tag": "ALQ_56d66bf5", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.RNA-Seq.S6_L002_R2.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 7015601643 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 12001ce1-a67d-4223-9aaa-f3a1a25b4aae 06bfe8b0bf071a7d30e319ec0dc72786 {"aliquot_tag": "ALQ_56d66bf5", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.RNA-Seq.transcriptome.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.transcriptome.gdc_realn.bam 13107024558 BAM transcriptome harmonized CPTAC3 59d9a4f8-6964-4eb1-9f63-038b4ad12282 41f0fb79e2bc3c0a5bfb6a933a9fc216 {"aliquot_tag": "ALQ_56d66bf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.RNA-Seq.transcriptome.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.transcriptome.gdc_realn.bam 10547090814 BAM transcriptome harmonized CPTAC3 5118f358-7992-4dad-b504-74229c83860a 7b6c5194b78c74a40639cc21d6e5c099 {"aliquot_tag": "ALQ_4505367e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.WGS.N C3L-04365 LUAD WGS blood_normal CPT0243710002 CPT0243710002.WholeGenome.RP-1303.bam 85308527333 BAM submitted_aligned CPTAC3 26c73d86-e349-47d0-8ea4-461cebbb3253 6e480fe500aeba84f1616439bb4a2d53 {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04365.WGS.N.hg38 C3L-04365 LUAD WGS blood_normal CPT0243710002 a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wgs_gdc_realn.bam 124296999433 BAM harmonized CPTAC3 a65d2756-edfd-4640-ac1a-10ef43808513 2895c3063897784c7f2215664ae0f6ea {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04365.WGS.T C3L-04365 LUAD WGS tumor CPT0243560007 CPT0243560007.WholeGenome.RP-1303.bam 60269243874 BAM submitted_aligned CPTAC3 e2d52e98-0aa4-46b9-9e63-daa5b01b51e6 4032ce7952504abb9a5af24fbec52e9a {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.WGS.T.hg38 C3L-04365 LUAD WGS tumor CPT0243560007 f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wgs_gdc_realn.bam 88704198855 BAM harmonized CPTAC3 1c8c1e75-8f8f-448f-a584-cd062f4a2f7c 44ef020472da1652031b9616a284ca7d {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.WXS.A C3L-04365 LUAD WXS tissue_normal CPT0243620006 CPT0243620006.WholeExome.RP-1303.bam 20483000335 BAM submitted_aligned CPTAC3 69091bae-2508-460c-8f59-f018d785a014 d14a095439df16ca61b24db53917578b {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.WXS.A.hg38 C3L-04365 LUAD WXS tissue_normal CPT0243620006 1f5d7c92-cf45-4e13-ae33-5d2f30456320_wxs_gdc_realn.bam 28301321282 BAM harmonized CPTAC3 87e1a5ee-aa97-4fdf-a66a-d8269ac0b01c 25e868d6c0d097c2d9a398aa3e9fe1c6 {"aliquot_tag": "ALQ_c6697664", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04365.WXS.N C3L-04365 LUAD WXS blood_normal CPT0243710002 CPT0243710002.WholeExome.RP-1303.bam 27600019920 BAM submitted_aligned CPTAC3 12c737f2-078d-47d1-8a36-c217d02306c2 bbea6193601e914d87a4bf8bc48970cc {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04365.WXS.N.hg38 C3L-04365 LUAD WXS blood_normal CPT0243710002 a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wxs_gdc_realn.bam 38230343323 BAM harmonized CPTAC3 be1595fb-3fd7-44a8-9815-95f1278bd10f 24ee1ba0e776bcc55113c12777802f28 {"aliquot_tag": "ALQ_4df81b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04365.WXS.T C3L-04365 LUAD WXS tumor CPT0243560007 CPT0243560007.WholeExome.RP-1303.bam 28190835608 BAM submitted_aligned CPTAC3 3f9127cc-32c1-41e2-8256-0ba7bd0f551d edfd091ee93a1401119a83446520ed4d {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04365.WXS.T.hg38 C3L-04365 LUAD WXS tumor CPT0243560007 f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wxs_gdc_realn.bam 39393500859 BAM harmonized CPTAC3 be58f912-7f40-4fec-ab26-cc968a0ee1aa 01ce5a2c24d1303986e8fcea699d7319 {"aliquot_tag": "ALQ_c27a929c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04367.MethArray.Green.A C3L-04367 LSCC Methylation_Array tissue_normal CPT0243940006 204367400087_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8c55786d-c4c7-4ca4-adf0-72f0d4cc3f06 c207a2312034581c95853e3410d8f55d {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.MethArray.Green.T C3L-04367 LSCC Methylation_Array tumor CPT0243930006 204367490061_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99b16cae-7663-4f9e-942e-910369391a9d 1b3b935c0884e09abd4d66cdc618ee3c {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.MethArray.Red.A C3L-04367 LSCC Methylation_Array tissue_normal CPT0243940006 204367400087_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 0145cdca-7740-47e3-a512-6af69117ff19 2b52fdb715a0c92a648635aa7da640dd {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.MethArray.Red.T C3L-04367 LSCC Methylation_Array tumor CPT0243930006 204367490061_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 6a3cc898-2fc7-413d-8a42-ac11abfc8b2e f38f6ab751ec8452cbdd5113f4acebef {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.miRNA-Seq.A.hg38 C3L-04367 LSCC miRNA-Seq tissue_normal CPT0243940009 55b7d942-9086-42e6-8b2f-6abfeec5d7e1_mirnaseq_gdc_realn.bam 260382374 BAM harmonized CPTAC3 f69f0cdc-1ff2-42e4-aa4b-4bc51f83806b 97e005d5d63270d2baa207cd3526cd05 {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.miRNA-Seq.S2_L005_R1.A C3L-04367 LSCC miRNA-Seq tissue_normal CPT0243940009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACTTGA_S2_L005_R1_001.unaln.bam 234292241 BAM S2_L005_R1 submitted_unaligned CPTAC3 4185f9c4-fa9d-4190-81d0-69c0786fa607 28186b1085114b18d181fd832db3fb0c {"aliquot_tag": "ALQ_28c02c80", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.miRNA-Seq.S36_L007_R1.T C3L-04367 LSCC miRNA-Seq tumor CPT0243930009 200224_UNC31-K00269_0267_AHC722BBXY_CCAACA_S36_L007_R1_001.unaln.bam 239986011 BAM S36_L007_R1 submitted_unaligned CPTAC3 c8759de0-f611-4e5a-9b29-3dc2e1baf228 f876730e9f78789d78f4fdfe185bef54 {"aliquot_tag": "ALQ_9ae0f090", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.miRNA-Seq.T.hg38 C3L-04367 LSCC miRNA-Seq tumor CPT0243930009 52184acc-f4df-4503-9230-52d4e52c0033_mirnaseq_gdc_realn.bam 268205976 BAM harmonized CPTAC3 96aef43b-6a37-4be1-9540-5795e9648c2e 4bd66b3ffc22331c2c153c6ca6e30217 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.RNA-Seq.chimeric.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.chimeric.gdc_realn.bam 39961912 BAM chimeric harmonized CPTAC3 6d400425-5106-44ae-83b6-341a510466de a91f35b1350d2d23e5728699514b8c9e {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.RNA-Seq.chimeric.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.chimeric.gdc_realn.bam 29644974 BAM chimeric harmonized CPTAC3 ad1c30b6-ded3-4b40-a41a-ce7b50e0fd7d 52d40b038a8445cb05481efcc2c7b286 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.RNA-Seq.genomic.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.genomic.gdc_realn.bam 8608083393 BAM genomic harmonized CPTAC3 3e45924f-6066-4895-b1a1-35926e7da93f c91e51c8ed4c1c4301a271b1daef2176 {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.RNA-Seq.genomic.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.genomic.gdc_realn.bam 7720062068 BAM genomic harmonized CPTAC3 986b6e0b-00a5-4f33-ad95-268df3b118fc 861a9c35fd7ca8a98f1d9d6a82b66e02 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.RNA-Seq.S4_L001_R1.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R1_001.fastq.gz 3654971803 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 87bd023a-c17c-474f-bf93-d48fa86693c2 a58d59d4c151689960a5c06c57ea8262 {"aliquot_tag": "ALQ_9ae0f090", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.RNA-Seq.S4_L001_R2.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R2_001.fastq.gz 4050399091 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 76ca8adc-2d34-4e5a-9949-cdbaf86d1349 2aee2fe2baa5769bde093e884aa566bc {"aliquot_tag": "ALQ_9ae0f090", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.RNA-Seq.S8_L006_R1.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R1_001.fastq.gz 4286563271 FASTQ S8_L006_R1 submitted_unaligned CPTAC3 05be3890-a463-4fbd-96ae-deee3dde3878 341ad4e3d289b967ab65edcc22f7825a {"aliquot_tag": "ALQ_28c02c80", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.RNA-Seq.S8_L006_R2.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R2_001.fastq.gz 4635442449 FASTQ S8_L006_R2 submitted_unaligned CPTAC3 d86aa58d-2fde-4e3f-9cc3-fb2dcc9276c1 0c9683559ef77a9d0341e88f4dd862b3 {"aliquot_tag": "ALQ_28c02c80", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.RNA-Seq.transcriptome.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.transcriptome.gdc_realn.bam 10892159147 BAM transcriptome harmonized CPTAC3 45608d68-1780-4082-b9ef-4ed2974904f3 4cbdd1426a656614a651862a6c16f3c8 {"aliquot_tag": "ALQ_28c02c80", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.RNA-Seq.transcriptome.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.transcriptome.gdc_realn.bam 10703395760 BAM transcriptome harmonized CPTAC3 00a6a03f-c4bd-43e3-8063-a76eebaf6e81 f7dda343f9f5b63c899758e83d9f7253 {"aliquot_tag": "ALQ_9ae0f090", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.WGS.N C3L-04367 LSCC WGS blood_normal CPT0244050002 CPT0244050002.WholeGenome.RP-2158.bam 25403172493 BAM submitted_aligned CPTAC3 ff135c1d-dc1e-46ca-af94-de34e471d172 43c17d9a7a1c64f30f8b221652d23cf0 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04367.WGS.N.hg38 C3L-04367 LSCC WGS blood_normal CPT0244050002 66c866b7-f3dd-4c3f-9317-9d2d37e285ec_wgs_gdc_realn.bam 78025372440 BAM harmonized CPTAC3 a952e3fe-75bd-458c-9bea-ff26afd66c0f d7fd251aa82375d27a514e6f80a56579 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04367.WGS.T C3L-04367 LSCC WGS tumor CPT0243930006 CPT0243930006.WholeGenome.RP-2158.bam 27117639764 BAM submitted_aligned CPTAC3 7d6fd656-0016-483c-9b10-4d0794c2503f 845f9b82cdc9d68bd7a7e0ea888d9911 {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.WGS.T.hg38 C3L-04367 LSCC WGS tumor CPT0243930006 6c67e8c8-b814-4670-be14-4625361e289e_wgs_gdc_realn.bam 83847748117 BAM harmonized CPTAC3 1f946dd6-dedf-475d-ba71-f6a6f69b47c4 b31992f61ba1076f495737648e40a747 {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.WXS.A C3L-04367 LSCC WXS tissue_normal CPT0243940006 CPT0243940006.WholeExome.RP-1303.bam 42507906378 BAM submitted_aligned CPTAC3 66299e3e-a0f8-4046-ba6b-824195342c93 6b620e92fd107fa1d9fa8f313ad01cc8 {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.WXS.A.hg38 C3L-04367 LSCC WXS tissue_normal CPT0243940006 50bc524c-337d-48c2-8ec1-f6b9f2887877_wxs_gdc_realn.bam 57949736237 BAM harmonized CPTAC3 9411e504-317c-4fae-9476-18b27d6dcc85 8c897a35e9f2e3bf4114c5a7422b7ba9 {"aliquot_tag": "ALQ_b87f3111", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04367.WXS.N C3L-04367 LSCC WXS blood_normal CPT0244050002 CPT0244050002.WholeExome.RP-1303.bam 30578608788 BAM submitted_aligned CPTAC3 a8e46ac6-8b0a-41e9-b815-1aaca95669de e3e8586358661e64feb5e2e395a23b43 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04367.WXS.N.hg38 C3L-04367 LSCC WXS blood_normal CPT0244050002 66c866b7-f3dd-4c3f-9317-9d2d37e285ec_wxs_gdc_realn.bam 42001645363 BAM harmonized CPTAC3 5b8ebe75-31e9-4a04-a798-ce59f4845c5f 20314c4de93c503eeec3d067e0a86e10 {"aliquot_tag": "ALQ_60dab3fe", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04367.WXS.T C3L-04367 LSCC WXS tumor CPT0243930006 CPT0243930006.WholeExome.RP-1303.bam 24329997687 BAM submitted_aligned CPTAC3 f72960b2-75ff-46d4-9f8b-72080a0cd75d 2475a2853d807c0b35740b43dff12488 {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04367.WXS.T.hg38 C3L-04367 LSCC WXS tumor CPT0243930006 6c67e8c8-b814-4670-be14-4625361e289e_wxs_gdc_realn.bam 33717973993 BAM harmonized CPTAC3 14c05a65-bed9-4a99-8b8a-5157af7a0814 59ca9290d907ca66ad972c23f3c7f18b {"aliquot_tag": "ALQ_a5fed01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.MethArray.Green.A C3L-04378 LSCC Methylation_Array tissue_normal CPT0253130009 204367460011_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 232c3ef2-609a-4c83-b961-0f5f305bf3fc c5cb446dec3342d2ef004124cab6a0c1 {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.MethArray.Green.T C3L-04378 LSCC Methylation_Array tumor CPT0253090006 204367400148_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e24e7e6b-b474-42ee-8bc0-b112be5c8c06 41420afea26d5ca36ca8d20e8c3af9b2 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.MethArray.Red.A C3L-04378 LSCC Methylation_Array tissue_normal CPT0253130009 204367460011_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 01c3b983-09d6-4204-95ec-67e446fabf48 d37b3ef87d3279657c2c42bf8ba79113 {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.MethArray.Red.T C3L-04378 LSCC Methylation_Array tumor CPT0253090006 204367400148_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 145c2fd5-fd36-4906-a1e3-801a454f27ce d744effd0a002882809abd78371ef453 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.miRNA-Seq.A.hg38 C3L-04378 LSCC miRNA-Seq tissue_normal CPT0253130006 e968ea62-5948-4a2a-a3ce-d54fd82afa39_mirnaseq_gdc_realn.bam 255662049 BAM harmonized CPTAC3 6c4b821b-2507-40e8-b51c-2735cbf05667 e42fd9af2e2004d3f8fdec1607d779c2 {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.miRNA-Seq.S18_L001_R1.T C3L-04378 LSCC miRNA-Seq tumor CPT0253090013 200325_UNC31-K00269_0272_AHHC2NBBXY_TAATCG_S18_L001_R1_001.unaln.bam 198109814 BAM S18_L001_R1 submitted_unaligned CPTAC3 60ad6ebb-f994-4403-b62b-b384bd3e9e33 d515543e4d81d8032d350299a770b3ac {"aliquot_tag": "ALQ_c23b6138", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.miRNA-Seq.S42_L006_R1.A C3L-04378 LSCC miRNA-Seq tissue_normal CPT0253130006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAATCG_S42_L006_R1_001.unaln.bam 230826500 BAM S42_L006_R1 submitted_unaligned CPTAC3 fd5d86d3-2b5b-4049-a005-77ecda179018 f7283561229ad3f95d69864fff2eec83 {"aliquot_tag": "ALQ_2aa66ff2", "sample": "S42", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.miRNA-Seq.T.hg38 C3L-04378 LSCC miRNA-Seq tumor CPT0253090013 8fb9d030-c6b1-46e7-98ce-db199e0438c2_mirnaseq_gdc_realn.bam 217721301 BAM harmonized CPTAC3 22017cab-9e2e-411b-9b14-e064ad844349 d3c7cfe34e113dddbcc6c695a7e0ecfb {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.RNA-Seq.chimeric.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.chimeric.gdc_realn.bam 30990373 BAM chimeric harmonized CPTAC3 bba4fe68-93f1-4093-be92-f47efdfde70c 683c4e13c9054ba18f786bbe117dec9e {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.RNA-Seq.chimeric.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.chimeric.gdc_realn.bam 67627609 BAM chimeric harmonized CPTAC3 c4f4805e-240c-48b3-8f8a-b99080b531b0 afa3030d0e15d5ec36c4ce27079216fd {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.RNA-Seq.genomic.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.genomic.gdc_realn.bam 7728998345 BAM genomic harmonized CPTAC3 4a022d51-cdec-42c3-9acc-776b166e8053 2e38c2ac4cad7d50ebc14c485c8859fd {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.RNA-Seq.genomic.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.genomic.gdc_realn.bam 8227597738 BAM genomic harmonized CPTAC3 91cdaa4c-4768-48f4-9d6a-764750e074c6 18d2bd13ffb837fcd902a3a638c5b8ec {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.RNA-Seq.S26_L007_R1.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R1_001.fastq.gz 4228164914 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 8d742e60-e2ad-4582-86e7-fafbc1dd0c23 21dad26826390cd37d598c85bf9a9d14 {"aliquot_tag": "ALQ_c23b6138", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.RNA-Seq.S26_L007_R2.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R2_001.fastq.gz 4348810230 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 0c78e1e1-c0dd-48d6-a34b-6ef85a299153 b8ef57e0c39a8401e1da88786ed47dc8 {"aliquot_tag": "ALQ_c23b6138", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.RNA-Seq.S27_L007_R1.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R1_001.fastq.gz 3418029399 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 bf5e8149-2c96-4d05-97be-0c728c51af90 eba722686f88f2d8afab420bec7706af {"aliquot_tag": "ALQ_2aa66ff2", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.RNA-Seq.S27_L007_R2.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R2_001.fastq.gz 4223918706 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 d616db06-54ba-454a-bd91-9356ab737e17 ab39c16b32548f17ab6a96ab18882331 {"aliquot_tag": "ALQ_2aa66ff2", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.RNA-Seq.transcriptome.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.transcriptome.gdc_realn.bam 9406503853 BAM transcriptome harmonized CPTAC3 eaaec588-9a2b-4303-8b77-abc32fa902a3 460d34f1cb3c26079b6123459105b5ae {"aliquot_tag": "ALQ_2aa66ff2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.RNA-Seq.transcriptome.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.transcriptome.gdc_realn.bam 10793078534 BAM transcriptome harmonized CPTAC3 cbae9049-43dc-4f3a-b4ac-05f058e68c2e 66fa43eb4d3d69cf943ec8604d43c63f {"aliquot_tag": "ALQ_c23b6138", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.WGS.N C3L-04378 LSCC WGS blood_normal CPT0253240002 CPT0253240002.WholeGenome.RP-2158.bam 30279299575 BAM submitted_aligned CPTAC3 24a0a9ea-bff7-4403-89b4-5705129d6245 0ab83e8f6d4aa93cc27946a1c42109f9 {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04378.WGS.N.hg38 C3L-04378 LSCC WGS blood_normal CPT0253240002 862ce011-5c33-4644-8531-1b57170aa9aa_wgs_gdc_realn.bam 91657286140 BAM harmonized CPTAC3 442a8e18-cb34-4035-af1c-6dd4be88647c 0a5d36be679db7ce5607d6673b8ec100 {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04378.WGS.T C3L-04378 LSCC WGS tumor CPT0253090006 CPT0253090006.WholeGenome.RP-2158.bam 24254876470 BAM submitted_aligned CPTAC3 d4e5d622-26fa-4af6-a200-4f7cfb0a2402 7586783811b2158f7464aac883d94255 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.WGS.T.hg38 C3L-04378 LSCC WGS tumor CPT0253090006 996dad95-2c54-4866-9aca-9b5e90775fb7_wgs_gdc_realn.bam 70450220270 BAM harmonized CPTAC3 8b8103d0-513b-4ecc-b879-c7c690b87660 a0e43f29d693914fecc5e3b8ddf13a7b {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.WXS.A C3L-04378 LSCC WXS tissue_normal CPT0253130009 CPT0253130009.WholeExome.RP-1303.bam 18317138231 BAM submitted_aligned CPTAC3 8fdc3cde-074e-45ce-b815-8ecb017fc619 583ed46d69a46772239c3f4a5b88c700 {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.WXS.A.hg38 C3L-04378 LSCC WXS tissue_normal CPT0253130009 3e04d575-df92-4f62-8dee-9638c5d933e4_wxs_gdc_realn.bam 25222843483 BAM harmonized CPTAC3 ed7ed69b-210c-44f7-893e-115dfd44e2ab 14f5e5b8b41ca825a83566370885f41b {"aliquot_tag": "ALQ_ba197263", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04378.WXS.N C3L-04378 LSCC WXS blood_normal CPT0253240002 CPT0253240002.WholeExome.RP-1303.bam 26078072039 BAM submitted_aligned CPTAC3 bffabf7f-40c2-41a3-a8dc-62a3d8d2d607 2fb92711aa5ce4c95b076ce4e78f930c {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04378.WXS.N.hg38 C3L-04378 LSCC WXS blood_normal CPT0253240002 862ce011-5c33-4644-8531-1b57170aa9aa_wxs_gdc_realn.bam 35163087499 BAM harmonized CPTAC3 fa95fd35-90a7-41f7-bb5a-0457d118ad47 55edf889b50b842aea02e0a68de285fe {"aliquot_tag": "ALQ_197f0555", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04378.WXS.T C3L-04378 LSCC WXS tumor CPT0253090006 CPT0253090006.WholeExome.RP-1303.bam 26208736814 BAM submitted_aligned CPTAC3 45c9e664-9e16-4af1-91a0-b3c910c3e00b 8e892199e4b6d86a23f73423d40c1169 {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04378.WXS.T.hg38 C3L-04378 LSCC WXS tumor CPT0253090006 996dad95-2c54-4866-9aca-9b5e90775fb7_wxs_gdc_realn.bam 36888245759 BAM harmonized CPTAC3 14bb50f9-db76-4f9b-b8b1-3de1c55a2e62 5829e07794e000ef0de757936ebe19af {"aliquot_tag": "ALQ_ab4aa4f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.MethArray.Green.A C3L-04379 LSCC Methylation_Array tissue_normal CPT0258830006 204372030079_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 3bff55e9-0709-400e-9461-839a0071013b 745e96920e97e7dc651e35985a70005a {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.MethArray.Green.T C3L-04379 LSCC Methylation_Array tumor CPT0258790006 204372030161_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1bdfc188-95c8-421e-bf72-914bbb1ea37e eb4b1808b5016b095fc0367632bc252e {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.MethArray.Red.A C3L-04379 LSCC Methylation_Array tissue_normal CPT0258830006 204372030079_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 68718e29-aedb-4a4f-813a-8c234f662bc0 de5a373446ae5772995b51d9f89c0805 {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.MethArray.Red.T C3L-04379 LSCC Methylation_Array tumor CPT0258790006 204372030161_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 fb7bead9-02bf-4491-a0d4-530c69288bcd 6ded99d9b81496074737ab33658263c6 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.miRNA-Seq.A.hg38 C3L-04379 LSCC miRNA-Seq tissue_normal CPT0258830009 f59b66fd-e54e-40d7-b4c0-8b3df7add380_mirnaseq_gdc_realn.bam 304081288 BAM harmonized CPTAC3 ab19416a-c1fd-4e2d-8a59-657040d7f97c 39fa170ab6fd38abb7a21967ae047e6e {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.miRNA-Seq.S10_L006_R1.T C3L-04379 LSCC miRNA-Seq tumor CPT0258790009 200224_UNC31-K00269_0267_AHC722BBXY_TAGCTT_S10_L006_R1_001.unaln.bam 235231599 BAM S10_L006_R1 submitted_unaligned CPTAC3 807cebfa-a3e9-4127-9ae5-dfef6c8bfdf1 0aeb96e477996612d23c5eeba5d67797 {"aliquot_tag": "ALQ_24f7dd25", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.miRNA-Seq.S22_L007_R1.A C3L-04379 LSCC miRNA-Seq tissue_normal CPT0258830009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAGCTT_S22_L007_R1_001.unaln.bam 279438602 BAM S22_L007_R1 submitted_unaligned CPTAC3 67d13804-ec66-481f-afcc-b9f6d97d948a c2f10401bea4c3cc5d2d93affb58173d {"aliquot_tag": "ALQ_9f117751", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.miRNA-Seq.T.hg38 C3L-04379 LSCC miRNA-Seq tumor CPT0258790009 4495da1a-11be-495a-b806-4ad64b4bd81f_mirnaseq_gdc_realn.bam 260039928 BAM harmonized CPTAC3 c5633da2-b2a2-446d-b191-a0f1e90cafff 7ec8c36a14d7943c32eb6d7032ba6d14 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.RNA-Seq.chimeric.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.chimeric.gdc_realn.bam 102415248 BAM chimeric harmonized CPTAC3 6bfc5a0e-ada3-4173-bd9f-ed0d2f601f84 070e9b2bb6627bb2e8638159b0850438 {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.RNA-Seq.chimeric.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.chimeric.gdc_realn.bam 113172074 BAM chimeric harmonized CPTAC3 3d08b5b7-623e-49c7-93b9-1cf009cd845c ddaa77ed29ed36b8c26de5e5f2f08590 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.RNA-Seq.genomic.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.genomic.gdc_realn.bam 9200780146 BAM genomic harmonized CPTAC3 8c011a66-a1eb-4c3b-91f0-cd64bf51fb45 2ace3ba30bdc54b4756fa05b03ebc746 {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.RNA-Seq.genomic.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.genomic.gdc_realn.bam 7334872781 BAM genomic harmonized CPTAC3 2af3f8c0-c09f-4b6f-a0e0-4530b4dd303f cf5d194892cfd59a90ffef3758f23ec7 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.RNA-Seq.S10_L003_R1.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R1_001.fastq.gz 4402756906 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 a67e93ba-923d-4ef4-9215-1d9399680796 dc72fc93c27915680196271d4df3136a {"aliquot_tag": "ALQ_9f117751", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.RNA-Seq.S10_L003_R2.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R2_001.fastq.gz 4910717795 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 35d9c7a4-08c2-4aee-a984-22634bcc7fb2 c64dbfae7adc73caeddb8481e13974b1 {"aliquot_tag": "ALQ_9f117751", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.RNA-Seq.S26_L007_R1.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R1_001.fastq.gz 3602507671 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 375cfed3-d945-482e-8f3a-e44533ff20d4 56d2ba42d86c24bda1ac5b0269f36807 {"aliquot_tag": "ALQ_24f7dd25", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.RNA-Seq.S26_L007_R2.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R2_001.fastq.gz 3802883422 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 52102e19-6dce-4914-aad1-5b6ba6ad1419 bb5ea8bcfff2980953f1f95a0cc5bea0 {"aliquot_tag": "ALQ_24f7dd25", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.RNA-Seq.transcriptome.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.transcriptome.gdc_realn.bam 12274071631 BAM transcriptome harmonized CPTAC3 a642ca7d-2bb6-4e6b-bd0a-ba76aa35cfa8 3a9aaf8a6fbc7dda9651d3f30c99178a {"aliquot_tag": "ALQ_9f117751", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.RNA-Seq.transcriptome.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.transcriptome.gdc_realn.bam 7612933545 BAM transcriptome harmonized CPTAC3 4d2c0f00-9f43-4915-aa8a-f027631ca939 a51f8fb6e196993997d588753e393619 {"aliquot_tag": "ALQ_24f7dd25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.WGS.N C3L-04379 LSCC WGS blood_normal CPT0258940002 CPT0258940002.WholeGenome.RP-2158.bam 22380669080 BAM submitted_aligned CPTAC3 d5198e12-66f9-4b64-a782-e494f0053eec ba8d5e5bb03d69adb1b03d2c71e34124 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04379.WGS.N.hg38 C3L-04379 LSCC WGS blood_normal CPT0258940002 626f0195-bf7f-46f9-8461-8ca13e90aa70_wgs_gdc_realn.bam 65992264424 BAM harmonized CPTAC3 fd240ca7-62df-4822-b84f-556db25e7339 939172114cb901bf7727568b54dc7643 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04379.WGS.T C3L-04379 LSCC WGS tumor CPT0258790006 CPT0258790006.WholeGenome.RP-2158.bam 21247752803 BAM submitted_aligned CPTAC3 bb4b23e1-83f6-4b1a-b242-89a8e7705cf6 2b9ae148eb4fb65b051db57b19cb29f8 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.WGS.T.hg38 C3L-04379 LSCC WGS tumor CPT0258790006 3f41e1ca-98fb-430f-9872-00ab38b27063_wgs_gdc_realn.bam 61570515658 BAM harmonized CPTAC3 17fafc2f-bee1-4083-96d3-42a8ad6db92c 1b2c8b46ac441747601819d20da81c18 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.WXS.A C3L-04379 LSCC WXS tissue_normal CPT0258830006 CPT0258830006.WholeExome.RP-1303.bam 33637470015 BAM submitted_aligned CPTAC3 5494aa26-7b40-4199-9d6f-ff471f4f356e 156fa4e5e4481c6859196a1ef0b43b54 {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.WXS.A.hg38 C3L-04379 LSCC WXS tissue_normal CPT0258830006 4babb79a-b2d3-42fb-b5ee-163f5ead06da_wxs_gdc_realn.bam 46433548911 BAM harmonized CPTAC3 0e815360-e1d3-4e01-8f7e-5d8fea339f6f a4e4d860a8a88edd16c98733cb1eaaac {"aliquot_tag": "ALQ_fae6ac0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04379.WXS.N C3L-04379 LSCC WXS blood_normal CPT0258940002 CPT0258940002.WholeExome.RP-1303.bam 25626888869 BAM submitted_aligned CPTAC3 cfb8e11a-2bbc-4acf-8c17-2717461b1cc7 f1263f8fd00b64063f923926614828b2 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04379.WXS.N.hg38 C3L-04379 LSCC WXS blood_normal CPT0258940002 626f0195-bf7f-46f9-8461-8ca13e90aa70_wxs_gdc_realn.bam 35645192848 BAM harmonized CPTAC3 ecbe558a-46e9-4a62-a463-d71d54279534 14eea44efdd7009fcd5292eb0bbc6172 {"aliquot_tag": "ALQ_71bfa16c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04379.WXS.T C3L-04379 LSCC WXS tumor CPT0258790006 CPT0258790006.WholeExome.RP-1303.bam 49847641656 BAM submitted_aligned CPTAC3 6faf7b10-e4f1-4517-a7f6-f5880624b632 0c43af254f088af4fcbd3d44f842cabd {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04379.WXS.T.hg38 C3L-04379 LSCC WXS tumor CPT0258790006 3f41e1ca-98fb-430f-9872-00ab38b27063_wxs_gdc_realn.bam 67841108187 BAM harmonized CPTAC3 a52cc624-ee49-4b1b-910a-38695ea65e72 5cebf6aea9b0f96db46ce2d6bf268591 {"aliquot_tag": "ALQ_b448c0b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04391.MethArray.Green.A C3L-04391 LSCC Methylation_Array tissue_normal CPT0234580006 203220070156_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7a99f97b-4c82-4531-8512-c5635a34b54a 3e7dc913ddb144880f44b09e622fc737 {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.MethArray.Green.T C3L-04391 LSCC Methylation_Array tumor CPT0234560006 203219670019_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 80757296-522f-4787-8fae-cd729eb30468 6cce0f866a16061ec453a085a084b1c7 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.MethArray.Red.A C3L-04391 LSCC Methylation_Array tissue_normal CPT0234580006 203220070156_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 55e771df-0026-4450-a67d-336dc7fdbcc7 d06c0ec5d0aa308772b3a3a0465f5511 {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.MethArray.Red.T C3L-04391 LSCC Methylation_Array tumor CPT0234560006 203219670019_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 ab7d15a0-a4df-4a47-9a1a-29955315f3aa e50211e6f485e146c03c04fb6c98604d {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.miRNA-Seq.A.hg38 C3L-04391 LSCC miRNA-Seq tissue_normal CPT0234580009 86192daa-a2a0-41dd-8bd7-33a7eacb1226_mirnaseq_gdc_realn.bam 194351617 BAM harmonized CPTAC3 9f831027-d0e7-42c0-9c96-d10669f9e4b6 81fa9db7cf4d37bcaf443e04c883e464 {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.miRNA-Seq.S18_L005_R1.A C3L-04391 LSCC miRNA-Seq tissue_normal CPT0234580009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGGCG_S18_L005_R1_001.unaln.bam 171119653 BAM S18_L005_R1 submitted_unaligned CPTAC3 1d5e5591-a635-4678-919f-7a98806d5a6c b3dac1da3dbcff68f7b1c5a2d61adba1 {"aliquot_tag": "ALQ_5590366d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.miRNA-Seq.S38_L004_R1.T C3L-04391 LSCC miRNA-Seq tumor CPT0234560009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGCTAC_S38_L004_R1_001.unaln.bam 193573833 BAM S38_L004_R1 submitted_unaligned CPTAC3 269b9ebd-d4de-43ed-990c-4238141d7057 09ee2955256a30aa828ba424875e3fec {"aliquot_tag": "ALQ_eaa0880c", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.miRNA-Seq.T.hg38 C3L-04391 LSCC miRNA-Seq tumor CPT0234560009 8a900578-d77f-44a3-b9a7-e63231305ede_mirnaseq_gdc_realn.bam 212571525 BAM harmonized CPTAC3 2c3fefef-a8a4-4786-b6be-b472530da10d 3e1db801858cf196319b2080528bec2d {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.RNA-Seq.chimeric.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.chimeric.gdc_realn.bam 124404815 BAM chimeric harmonized CPTAC3 126b5444-22b8-4c37-8de9-ed0e3d4e455c 7f7bbaca1689468c5e5725e20d63def8 {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.RNA-Seq.chimeric.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.chimeric.gdc_realn.bam 381544659 BAM chimeric harmonized CPTAC3 1c4b09b5-859d-40bf-acc1-941bbd21f724 75695776f9e77e1b1865cabfe66bd2d8 {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.RNA-Seq.genomic.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.genomic.gdc_realn.bam 7341117208 BAM genomic harmonized CPTAC3 0ff537c2-6f6f-4a57-b58e-f8ca17e7b13b 3aa0c77e5b79ec266d97b24b5c17e88b {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.RNA-Seq.genomic.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.genomic.gdc_realn.bam 8602160936 BAM genomic harmonized CPTAC3 28a222a2-f191-4186-ab67-1e7039e5117e e358ddb83af27bc16b860899c90a1f3a {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.RNA-Seq.S1_L001_R1.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3849084503 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 22821061-ec85-4e1d-a424-b63a52995078 8e3ffdcbe574a8fa3a32a0f3590ba85a {"aliquot_tag": "ALQ_eaa0880c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.RNA-Seq.S1_L001_R2.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4468925645 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 19cba40a-ed47-40ef-a828-905b782c3ecd 48242ebff289dd82f91da1c9deb335fe {"aliquot_tag": "ALQ_eaa0880c", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.RNA-Seq.S3_L007_R1.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R1_001.fastq.gz 3469292179 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 6ff9da82-c1d1-48bb-b2ff-c5241ff3bd17 9c3553ff54bce5df7f8f00c2a2598b98 {"aliquot_tag": "ALQ_5590366d", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.RNA-Seq.S3_L007_R2.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3890281049 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 f7e9960d-2451-4a44-a3a2-539450cf26d1 07a79b511d20f77332dfa6f9c39232a3 {"aliquot_tag": "ALQ_5590366d", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.RNA-Seq.transcriptome.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.transcriptome.gdc_realn.bam 8312179071 BAM transcriptome harmonized CPTAC3 7fc54b30-dabc-4052-ae1e-079b22782bff 82317bcd0bc96e1e86426d4e42c5773e {"aliquot_tag": "ALQ_5590366d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.RNA-Seq.transcriptome.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.transcriptome.gdc_realn.bam 10692370655 BAM transcriptome harmonized CPTAC3 3a34120c-b424-4a12-ab63-095e5e9857d3 a9b2ecfd99e3a03b9b90801e34c6cd45 {"aliquot_tag": "ALQ_eaa0880c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.WGS.N C3L-04391 LSCC WGS blood_normal CPT0235180002 CPT0235180002.WholeGenome.RP-1303.bam 54864648711 BAM submitted_aligned CPTAC3 d767bc8a-0868-4ea2-8e81-15a14cd88b0a 13a72c4e10a7d80a0e0ef7b2b95a0bea {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04391.WGS.N.hg38 C3L-04391 LSCC WGS blood_normal CPT0235180002 7d68aadc-cfad-474d-8cbd-98866b356245_wgs_gdc_realn.bam 81091303675 BAM harmonized CPTAC3 d22a2984-330a-4fda-b33b-85c32cd191ea 92fa2cbac72df64ba2ba8ca071e78018 {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04391.WGS.T C3L-04391 LSCC WGS tumor CPT0234560006 CPT0234560006.WholeGenome.RP-1303.bam 55204097682 BAM submitted_aligned CPTAC3 23878d11-a991-4988-8c74-922ae826e8cb bdad6760de30ae43231013a422850ab5 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.WGS.T.hg38 C3L-04391 LSCC WGS tumor CPT0234560006 a52caf88-af54-482a-adcc-5c303877aa1b_wgs_gdc_realn.bam 81007262049 BAM harmonized CPTAC3 0693edc4-6418-4abd-a114-d378f88dd700 c63aebdb1b02a20f1121d317905f3963 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.WXS.A C3L-04391 LSCC WXS tissue_normal CPT0234580006 CPT0234580006.WholeExome.RP-1303.bam 26337190886 BAM submitted_aligned CPTAC3 c4621bc2-713b-4ca8-8234-835a652e480e 8ff2126002450bb6670d87c1a5c258b4 {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.WXS.A.hg38 C3L-04391 LSCC WXS tissue_normal CPT0234580006 ac4e1492-1c42-4abe-92c8-3e9ddbefd745_wxs_gdc_realn.bam 36853142436 BAM harmonized CPTAC3 68749741-8772-4126-80b4-5c3379a7529d 1e79421cc033b00cc68fdd18b6d63afa {"aliquot_tag": "ALQ_c52f2bfc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04391.WXS.N C3L-04391 LSCC WXS blood_normal CPT0235180002 CPT0235180002.WholeExome.RP-1303.bam 26117548067 BAM submitted_aligned CPTAC3 989043de-8160-40a1-9b30-087280fe082b 89d9b31dbc9e5bf99fe0a031bc2182a5 {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04391.WXS.N.hg38 C3L-04391 LSCC WXS blood_normal CPT0235180002 7d68aadc-cfad-474d-8cbd-98866b356245_wxs_gdc_realn.bam 35963405537 BAM harmonized CPTAC3 fa19091c-05eb-40a3-8a34-08b810ae7475 04984ce30410b74086e0511c97abac7f {"aliquot_tag": "ALQ_ffa4a647", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04391.WXS.T C3L-04391 LSCC WXS tumor CPT0234560006 CPT0234560006.WholeExome.RP-1303.bam 24969656189 BAM submitted_aligned CPTAC3 0888f3e9-d002-48f2-92f4-f3de93e38468 172e10739e617722a6219f71689d46ad {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04391.WXS.T.hg38 C3L-04391 LSCC WXS tumor CPT0234560006 a52caf88-af54-482a-adcc-5c303877aa1b_wxs_gdc_realn.bam 34429160845 BAM harmonized CPTAC3 1bc99f74-4329-4248-ba2d-38dac011326a 3cb9a490d45bc7374c09c7ecc008c405 {"aliquot_tag": "ALQ_7a1f959d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04392.MethArray.Green.T C3L-04392 GBM Methylation_Array tumor CPT0393310006 204930640042_R08C01_Grn.idat 13677893 IDAT Green NA CPTAC3 70e79878-dd3c-4b81-b3b4-37b13d480ab2 b03ad51028e47fcc699fdffb437bba06 {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.MethArray.Red.T C3L-04392 GBM Methylation_Array tumor CPT0393310006 204930640042_R08C01_Red.idat 13677893 IDAT Red NA CPTAC3 9989b270-5a19-46cc-a174-d1e227eab9ca b735849af9a4deb8c7396b5d74464180 {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.miRNA-Seq.S38_L007_R1.T C3L-04392 GBM miRNA-Seq tumor CPT0393310009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAGCTT_S38_L007_R1_001.unaln.bam 358392894 BAM S38_L007_R1 submitted_unaligned CPTAC3 5432af42-018a-4faa-8492-77175e136ac0 47bf2742dd7a32550d450c429c968694 {"aliquot_tag": "ALQ_cdc58104", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.miRNA-Seq.T.hg38 C3L-04392 GBM miRNA-Seq tumor CPT0393310009 b7e66dc0-51bd-4974-b239-bcbef53ddef2_mirnaseq_gdc_realn.bam 383688020 BAM harmonized CPTAC3 aed02248-4e4d-4b98-ab13-bc1ed0167520 e781763afc0bd961eb17d5f454b63162 {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.RNA-Seq.chimeric.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.chimeric.gdc_realn.bam 533313906 BAM chimeric harmonized CPTAC3 4b84971b-14ac-4743-baea-4f863f514e45 85c88b8435686ed850e3edae2b8a29de {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.RNA-Seq.genomic.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.genomic.gdc_realn.bam 8489469921 BAM genomic harmonized CPTAC3 07d0687f-64ed-47d5-99ed-28cd07a64da9 713f418df941ff03517268dc926f2ce2 {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.RNA-Seq.S2_L001_R1.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 d815c7ac-1edc-4e57-a53b-947849bdb025 7f57961d1f57e808fba6a0a2d9b8869f {"aliquot_tag": "ALQ_cdc58104", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.RNA-Seq.S2_L001_R2.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 65353cb8-0cb1-4747-a95d-b11ff0bc7361 5cdf19e1b0bae31ef1932a8e1f1e687d {"aliquot_tag": "ALQ_cdc58104", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.RNA-Seq.transcriptome.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.transcriptome.gdc_realn.bam 9858589719 BAM transcriptome harmonized CPTAC3 de27e4da-ab2c-44f9-b7ff-b3a83a916736 3dc81c530569b7d39f188f1044515bc8 {"aliquot_tag": "ALQ_cdc58104", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.WGS.N C3L-04392 GBM WGS blood_normal CPT0392370002 CPT0392370002.WholeGenome.RP-2158.bam 24049436111 BAM submitted_aligned CPTAC3 f243bcd7-9195-4d38-817f-618977fb28eb c2775ba6b3e3e724e3ee4db10ef63778 {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04392.WGS.N.hg38 C3L-04392 GBM WGS blood_normal CPT0392370002 ff58cfa7-a42b-4c49-81b2-a55b9d871181_wgs_gdc_realn.bam 71169654491 BAM harmonized CPTAC3 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 8f527a3751c360fd4c71b267d404420a {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04392.WGS.T C3L-04392 GBM WGS tumor CPT0393310006 CPT0393310006.WholeGenome.RP-2158.bam 25106387064 BAM submitted_aligned CPTAC3 35aee152-5492-4664-8706-ca92247a2a81 f55a8d674bd88870ed7e381417c7214e {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.WGS.T.hg38 C3L-04392 GBM WGS tumor CPT0393310006 156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wgs_gdc_realn.bam 78098439529 BAM harmonized CPTAC3 aa97d6a5-ecfe-4536-8f34-dc07208769eb e349bd8bf78d93b04cce674ef560d912 {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.WXS.N C3L-04392 GBM WXS blood_normal CPT0392370002 CPT0392370002.WholeExome.RP-1303.bam 29321820408 BAM submitted_aligned CPTAC3 097aa948-f10b-46c4-b757-6cdb889edd9a abb9dd25e41f6240ac63d471f6fbeb75 {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04392.WXS.N.hg38 C3L-04392 GBM WXS blood_normal CPT0392370002 ff58cfa7-a42b-4c49-81b2-a55b9d871181_wxs_gdc_realn.bam 40870259415 BAM harmonized CPTAC3 ad13323f-754b-4392-8a91-3cc76915b63c 25b391aa311ac1fee33c0259e24ff870 {"aliquot_tag": "ALQ_7320a698", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-04392.WXS.T C3L-04392 GBM WXS tumor CPT0393310006 CPT0393310006.WholeExome.RP-1303.bam 23350456251 BAM submitted_aligned CPTAC3 c050abe1-2236-4049-91c5-97cfb29cf143 84e7bac0f009916352bb4210e72c58ad {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04392.WXS.T.hg38 C3L-04392 GBM WXS tumor CPT0393310006 156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wxs_gdc_realn.bam 32227999506 BAM harmonized CPTAC3 96e5a83a-8889-43f6-abe3-2ce778568d80 e95c174c1c0cab8add5a2526ad983d8d {"aliquot_tag": "ALQ_5d7a9c95", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-04402.MethArray.Green.A C3L-04402 LSCC Methylation_Array tissue_normal CPT0281070006 204372030106_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6acb3061-7ba5-4fa5-85a4-598fe4854d5c fe1cca1aa5969c53a1fe7600d48c3d13 {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04402.MethArray.Green.T C3L-04402 LSCC Methylation_Array tumor CPT0281060006 204372030022_R08C01_Grn.idat 13677905 IDAT Green NA CPTAC3 0084b1e1-a779-42a1-bc68-844f50232b06 ec242afebe1fd32729c708c31f6e3b76 {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.MethArray.Red.A C3L-04402 LSCC Methylation_Array tissue_normal CPT0281070006 204372030106_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 e6c24881-9108-4b94-a3a0-5cd6e8894966 3f4c478a4d684bf32f2c76b28e42d7ab {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04402.MethArray.Red.T C3L-04402 LSCC Methylation_Array tumor CPT0281060006 204372030022_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 cddbec4b-8215-443f-83c1-17d101aed108 f62540d1747e4940920c7bd130415a1e {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.miRNA-Seq.S17_L008_R1.T C3L-04402 LSCC miRNA-Seq tumor CPT0281060009 200224_UNC31-K00269_0267_AHC722BBXY_GTAGAG_S17_L008_R1_001.unaln.bam 194460114 BAM S17_L008_R1 submitted_unaligned CPTAC3 94230a07-3396-48b9-b03e-5b65b85151a0 d0b24cb838140b87202dbe9c338b1872 {"aliquot_tag": "ALQ_b53f2a4e", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.miRNA-Seq.T.hg38 C3L-04402 LSCC miRNA-Seq tumor CPT0281060009 3905789c-2b5b-48e1-aaf6-da28dbe90e61_mirnaseq_gdc_realn.bam 220711963 BAM harmonized CPTAC3 2581b871-3cf7-425d-b0d1-5fa821dc1cc8 ded6b402250dcec8e5c300eb9a73c7a6 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.RNA-Seq.chimeric.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.chimeric.gdc_realn.bam 23110483 BAM chimeric harmonized CPTAC3 b236908f-e2ed-4c8b-9419-033c663636b7 1d11badf24e9ea8196151c7a5c1cba00 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.RNA-Seq.genomic.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.genomic.gdc_realn.bam 6925117317 BAM genomic harmonized CPTAC3 cb99c1e6-b493-4b86-9437-a505e2257a6e bbd9592f7e32df81a673fafcffa9b9c6 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.RNA-Seq.S1_L001_R1.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R1_001.fastq.gz 3116262455 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 fd64d4c2-e55f-4b11-8b79-424993ec283f 21bae8de5a63f2c0343ea8e28bbe02ff {"aliquot_tag": "ALQ_b53f2a4e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.RNA-Seq.S1_L001_R2.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R2_001.fastq.gz 3434270972 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 fcae66d9-1278-4d7a-85c1-0f8151392c0c d73a289f6c6c95edec8612602667d758 {"aliquot_tag": "ALQ_b53f2a4e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.RNA-Seq.transcriptome.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.transcriptome.gdc_realn.bam 8163548253 BAM transcriptome harmonized CPTAC3 55ac2c0f-3163-4c64-abf5-dd8df3d6ff15 f4e1e9bc1363b964d81894c4e1be83a0 {"aliquot_tag": "ALQ_b53f2a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.WGS.N C3L-04402 LSCC WGS blood_normal CPT0285780002 CPT0285780002.WholeGenome.RP-2158.bam 26025114290 BAM submitted_aligned CPTAC3 c66365f5-f774-4440-ba53-b39f53e5c3d8 1ef42f8c7720279c1b156da9f75f6753 {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04402.WGS.N.hg38 C3L-04402 LSCC WGS blood_normal CPT0285780002 4dc3a96a-b762-4a23-b6ba-38791790b86b_wgs_gdc_realn.bam 77030429119 BAM harmonized CPTAC3 8f8f6dc0-542c-4b18-8264-62c54578599c 1dfc7c33402d06d75cbc409986913874 {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04402.WGS.T C3L-04402 LSCC WGS tumor CPT0281060006 CPT0281060006.WholeGenome.RP-2158.bam 19746056389 BAM submitted_aligned CPTAC3 7b403441-0fe4-430b-b00a-165209c8fdc5 0c4c2e8b819b3611f4d976d499e6b1ff {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.WGS.T.hg38 C3L-04402 LSCC WGS tumor CPT0281060006 04193e63-80b9-4eeb-862e-6f78b23a3103_wgs_gdc_realn.bam 56543096092 BAM harmonized CPTAC3 eb602344-26fb-4aa6-a33f-82fd9b19b04f d04a1832d39cea7ae1a9eca8397727b9 {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.WXS.A C3L-04402 LSCC WXS tissue_normal CPT0281070006 CPT0281070006.WholeExome.RP-1303.bam 24820615379 BAM submitted_aligned CPTAC3 8b87bc6e-850b-4e37-b459-069a97163374 a3ece565d681913ddd692f2c54ddd619 {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04402.WXS.A.hg38 C3L-04402 LSCC WXS tissue_normal CPT0281070006 7c4c45e0-d336-4263-a591-01257b647e68_wxs_gdc_realn.bam 34246021633 BAM harmonized CPTAC3 6ef9ddf4-fd54-4f21-90d5-8e667a6afece 191991aeb81a1d0cef3fee8cba1d4332 {"aliquot_tag": "ALQ_18e01e6f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04402.WXS.N C3L-04402 LSCC WXS blood_normal CPT0285780002 CPT0285780002.WholeExome.RP-1303.bam 22012058038 BAM submitted_aligned CPTAC3 bd612b61-4d52-4e6b-adae-be387cac6614 b9198c7199d8aa542a271c6959c71a0e {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04402.WXS.N.hg38 C3L-04402 LSCC WXS blood_normal CPT0285780002 4dc3a96a-b762-4a23-b6ba-38791790b86b_wxs_gdc_realn.bam 29646121009 BAM harmonized CPTAC3 3fbd9bc9-fa07-4e1f-b885-955ccdc31857 56b68740b2e21c7230921ae157b78654 {"aliquot_tag": "ALQ_7497590c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04402.WXS.T C3L-04402 LSCC WXS tumor CPT0281060006 CPT0281060006.WholeExome.RP-1303.bam 21787447379 BAM submitted_aligned CPTAC3 3f12f4eb-be0e-4775-a038-3b831f549d6e 5cd3aaa60e67b89f5cf6ca986e34ecd1 {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04402.WXS.T.hg38 C3L-04402 LSCC WXS tumor CPT0281060006 04193e63-80b9-4eeb-862e-6f78b23a3103_wxs_gdc_realn.bam 30081180312 BAM harmonized CPTAC3 7037defd-5416-42a8-95b2-15e3a55ec87b 27df9e36161f105dc62a7311e8fcf28b {"aliquot_tag": "ALQ_258037df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.MethArray.Green.A C3L-04404 LSCC Methylation_Array tissue_normal CPT0284390006 204367490151_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 eddb9743-f69d-4d46-a3ae-fe0ec41f6d37 108dc73448884f028b0b641d6858aced {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.MethArray.Green.T C3L-04404 LSCC Methylation_Array tumor CPT0284380006 204372030015_R03C01_Grn.idat 13677905 IDAT Green NA CPTAC3 29d2e364-010c-4a10-91a3-ce61dae178d1 6ab9e4c8ada801b9315de3e80c01100d {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.MethArray.Red.A C3L-04404 LSCC Methylation_Array tissue_normal CPT0284390006 204367490151_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 b293851a-3683-4db9-a3d3-5896b43002aa 5ff52fe3db3c372df6670cf3ea9f96b7 {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.MethArray.Red.T C3L-04404 LSCC Methylation_Array tumor CPT0284380006 204372030015_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 1990235a-bf62-49c3-989b-bb707dba1547 ac2f948d214eb19b6efae8afb3baa7df {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.miRNA-Seq.A.hg38 C3L-04404 LSCC miRNA-Seq tissue_normal CPT0284390009 e1dadd45-c572-4847-bf33-7d89c4d92356_mirnaseq_gdc_realn.bam 306891555 BAM harmonized CPTAC3 b5d0566e-17a1-44be-89a5-afe33cae417a e4a6bc514ce6f8744285f8699beef795 {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.miRNA-Seq.S19_L008_R1.T C3L-04404 LSCC miRNA-Seq tumor CPT0284380009 200224_UNC31-K00269_0267_AHC722BBXY_GTGAAA_S19_L008_R1_001.unaln.bam 217957334 BAM S19_L008_R1 submitted_unaligned CPTAC3 f3ce923d-8c3a-4106-9bf3-1a32327e686d 55c9fd4ff7a446847069fd4062f27084 {"aliquot_tag": "ALQ_dea3c926", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.miRNA-Seq.S1_L005_R1.A C3L-04404 LSCC miRNA-Seq tissue_normal CPT0284390009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACAGTG_S1_L005_R1_001.unaln.bam 279938526 BAM S1_L005_R1 submitted_unaligned CPTAC3 28ab0146-7bc6-4183-aef2-c86422e5f31d 88ed164c185d3a16f056dfed0d6f64d1 {"aliquot_tag": "ALQ_e3c3e096", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.miRNA-Seq.T.hg38 C3L-04404 LSCC miRNA-Seq tumor CPT0284380009 596d776a-ca00-4cf6-9539-1987a7c7f864_mirnaseq_gdc_realn.bam 246656063 BAM harmonized CPTAC3 ba61bc82-85be-4f45-993c-e4266919fd7a e1ba639929e5bd4997243fd68702aceb {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.RNA-Seq.chimeric.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.chimeric.gdc_realn.bam 31119970 BAM chimeric harmonized CPTAC3 51f1f16a-87aa-4172-8292-dbbdca90aa39 edcef70f9b58fcfa2f6ba616ba56dd2a {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.RNA-Seq.chimeric.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.chimeric.gdc_realn.bam 41979576 BAM chimeric harmonized CPTAC3 efde4973-869b-454f-b69e-d3885e95c5fa ba40a07a63c9eb19d8e64d7fb144519d {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.RNA-Seq.genomic.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.genomic.gdc_realn.bam 7777204571 BAM genomic harmonized CPTAC3 6fdaedfc-d26b-4086-ae3a-5502c6a84d5f 1163eb50efa5c1049c40094f783641a6 {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.RNA-Seq.genomic.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.genomic.gdc_realn.bam 9326864117 BAM genomic harmonized CPTAC3 de5585ee-e7b3-4219-8ce3-7870b6842e00 8e2ddd5a975d0dd9b2ca6fc6310bf6f8 {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.RNA-Seq.S3_L001_R1.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R1_001.fastq.gz 4713549564 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 eed3326a-8be4-4296-98f0-d7478de78a84 c5a335f915aa9d80eab6ded19a6057c8 {"aliquot_tag": "ALQ_dea3c926", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.RNA-Seq.S3_L001_R2.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R2_001.fastq.gz 5261756231 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 96ae514b-7148-41d6-8cff-f4586b0080e6 a3fd737b3b49c4eb80868801c3be9a1f {"aliquot_tag": "ALQ_dea3c926", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.RNA-Seq.S5_L006_R1.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R1_001.fastq.gz 3898324935 FASTQ S5_L006_R1 submitted_unaligned CPTAC3 f077f27d-61bd-40e8-b4d4-996c9b7e63e7 fd2c7c2fb77e5c0285fe1e7867f4ce89 {"aliquot_tag": "ALQ_e3c3e096", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.RNA-Seq.S5_L006_R2.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R2_001.fastq.gz 4164092950 FASTQ S5_L006_R2 submitted_unaligned CPTAC3 b553992d-4327-4ea9-8af6-adb773e2eada d64877d0505d2b726eac1316770c1873 {"aliquot_tag": "ALQ_e3c3e096", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.RNA-Seq.transcriptome.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.transcriptome.gdc_realn.bam 9602489321 BAM transcriptome harmonized CPTAC3 0570f15f-baca-42e9-be10-9113e17f5e4c 11d28a15e398b52fb9c48424c196955f {"aliquot_tag": "ALQ_e3c3e096", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.RNA-Seq.transcriptome.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.transcriptome.gdc_realn.bam 12638558456 BAM transcriptome harmonized CPTAC3 2e38b381-2c6d-4a1c-8135-4e1c40c45c8c 22e58a1017ac82415aa4886a3c20ba78 {"aliquot_tag": "ALQ_dea3c926", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.WGS.N C3L-04404 LSCC WGS blood_normal CPT0285800002 CPT0285800002.WholeGenome.RP-2158.bam 29646130722 BAM submitted_aligned CPTAC3 1082fb0c-b52b-474f-ae57-cf48bb479ffa 1ed848562c50f1875488da3b488c2eec {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04404.WGS.N.hg38 C3L-04404 LSCC WGS blood_normal CPT0285800002 c2b9b16d-31c2-4824-bea8-127c4e3184ad_wgs_gdc_realn.bam 91194189527 BAM harmonized CPTAC3 f31033d4-9f98-4c28-abec-417846bf4ec5 6a8574cfd05ffbf686d704a63d575143 {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04404.WGS.T C3L-04404 LSCC WGS tumor CPT0284380006 CPT0284380006.WholeGenome.RP-2158.bam 24868549930 BAM submitted_aligned CPTAC3 9f5feb9e-9e84-49f0-9731-b1d495e8ebca 427ee249a2fb3d17b249b076b781329a {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.WGS.T.hg38 C3L-04404 LSCC WGS tumor CPT0284380006 118c8acc-4317-4f49-8349-d5cb8d9bf837_wgs_gdc_realn.bam 76839276981 BAM harmonized CPTAC3 8aff48b1-a9d7-4250-86d9-f8e23f58b1a6 b3a5d37f18b100ba6311ba11b60eb0e8 {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.WXS.A C3L-04404 LSCC WXS tissue_normal CPT0284390006 CPT0284390006.WholeExome.RP-1303.bam 39490557557 BAM submitted_aligned CPTAC3 b5ac2615-5340-49b5-b50f-2b3f7b10c70c c0a96edbf05110833e036ef09015ce66 {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.WXS.A.hg38 C3L-04404 LSCC WXS tissue_normal CPT0284390006 002650f3-c375-4f1d-9b0e-caef0b3a4378_wxs_gdc_realn.bam 55115039412 BAM harmonized CPTAC3 fc44c2f7-1006-4cb7-aea6-e3341b9e8a26 7aa30a88801a5c354d4836742ca6a0d6 {"aliquot_tag": "ALQ_737cfd07", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04404.WXS.N C3L-04404 LSCC WXS blood_normal CPT0285800002 CPT0285800002.WholeExome.RP-1303.bam 29846450687 BAM submitted_aligned CPTAC3 3220f985-596c-4bb9-aace-a4030293b220 600df09cd21f6ce1b18f735fb455b4d5 {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04404.WXS.N.hg38 C3L-04404 LSCC WXS blood_normal CPT0285800002 c2b9b16d-31c2-4824-bea8-127c4e3184ad_wxs_gdc_realn.bam 40905280928 BAM harmonized CPTAC3 3291b1f3-01c0-4526-8f39-a68530a110df 1bb613a2f19f70f11f7c1f8e905972d8 {"aliquot_tag": "ALQ_b5b1a018", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04404.WXS.T C3L-04404 LSCC WXS tumor CPT0284380006 CPT0284380006.WholeExome.RP-1303.bam 23050141330 BAM submitted_aligned CPTAC3 8fa124c3-854d-40ab-9f47-108a11c1bf80 2dba0db3bec64a40c27b653663830999 {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04404.WXS.T.hg38 C3L-04404 LSCC WXS tumor CPT0284380006 118c8acc-4317-4f49-8349-d5cb8d9bf837_wxs_gdc_realn.bam 32274167687 BAM harmonized CPTAC3 dd520ae8-4930-429f-a890-249989806161 584787c3e5e7b11d507ed7fbc59841ba {"aliquot_tag": "ALQ_4e1cd4b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.MethArray.Green.A C3L-04408 LSCC Methylation_Array tissue_normal CPT0284610006 204367490090_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3a0cd6be-00e3-415c-bf70-a350fbb30f22 2d74eca53a51ab95415d0b39d83d4c3f {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.MethArray.Green.T C3L-04408 LSCC Methylation_Array tumor CPT0284600006 204367490061_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c043e633-53f0-4069-9a16-476562fc9207 c48ac23e47f04a40c94bd726329e8aa0 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.MethArray.Red.A C3L-04408 LSCC Methylation_Array tissue_normal CPT0284610006 204367490090_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 356c2837-6fa6-45e5-9d7d-881bf1dd5f25 08739130e2baa2a8de93f156024d4eb2 {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.MethArray.Red.T C3L-04408 LSCC Methylation_Array tumor CPT0284600006 204367490061_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 ed72239b-a05e-4a80-b6c4-8f30e3e92d19 af05462aea6f616eac78b8671c72fe2c {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.miRNA-Seq.A.hg38 C3L-04408 LSCC miRNA-Seq tissue_normal CPT0284610013 2598a129-cb28-4946-99e5-f59b8d080d3a_mirnaseq_gdc_realn.bam 221556584 BAM harmonized CPTAC3 90cee161-5d78-468a-86e3-2c2af8b4ab5d 272253272ba822f1a004281a5824905d {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.miRNA-Seq.S21_L007_R1.A C3L-04408 LSCC miRNA-Seq tissue_normal CPT0284610013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTTTCG_S21_L007_R1_001.unaln.bam 200886341 BAM S21_L007_R1 submitted_unaligned CPTAC3 d071baf6-4ecd-4322-8cdc-6b9b9ae0f2ff d2b30c4c1075a66750213c14efb2e182 {"aliquot_tag": "ALQ_7ab0e2bb", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.miRNA-Seq.S35_L007_R1.T C3L-04408 LSCC miRNA-Seq tumor CPT0284600009 200224_UNC31-K00269_0267_AHC722BBXY_CATTTT_S35_L007_R1_001.unaln.bam 204358869 BAM S35_L007_R1 submitted_unaligned CPTAC3 5fc43bad-07fa-4483-934e-9906d0665f66 88d2143a56e32ae466d98d50fa94ab08 {"aliquot_tag": "ALQ_be1e1354", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.miRNA-Seq.T.hg38 C3L-04408 LSCC miRNA-Seq tumor CPT0284600009 15c01b50-ce5d-4315-9a86-3884f964d2eb_mirnaseq_gdc_realn.bam 226520036 BAM harmonized CPTAC3 c9f6b212-902c-4e50-8e9f-b0d80d6cdb9e b24071f2dba06a1ac4ec42c599204554 {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.RNA-Seq.chimeric.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.chimeric.gdc_realn.bam 71272688 BAM chimeric harmonized CPTAC3 619d7232-6cc8-4f6f-a1d2-40a771bfb5b7 1b2a644c1e5fd0ec4bf67288b2995f37 {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.RNA-Seq.chimeric.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.chimeric.gdc_realn.bam 26026707 BAM chimeric harmonized CPTAC3 22f39a83-9b14-463e-9463-c6dc8e11a7b7 01271b48cff523bb0366dd9179377158 {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.RNA-Seq.genomic.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.genomic.gdc_realn.bam 7226299403 BAM genomic harmonized CPTAC3 cce83df8-f247-402c-b39d-4fad49fd9fa8 09d64f9a538f1baf8ab14ea60a2d27e3 {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.RNA-Seq.genomic.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.genomic.gdc_realn.bam 7046476254 BAM genomic harmonized CPTAC3 cf410b2a-c419-40d2-aeda-e0785b05e32a ef6a94b3ea4bb4c411507b423acfd06d {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.RNA-Seq.S23_L006_R1.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R1_001.fastq.gz 3367240024 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 fe4116e1-39c9-4eda-a971-88e61d168499 5e549fbc508b5a666fed6896bfda77ce {"aliquot_tag": "ALQ_7ab0e2bb", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.RNA-Seq.S23_L006_R2.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R2_001.fastq.gz 3838125023 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 8834d01d-64c6-41be-ab13-f3228b045b9b cb56511816ab86afa60ffc509688427e {"aliquot_tag": "ALQ_7ab0e2bb", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.RNA-Seq.S3_L001_R1.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R1_001.fastq.gz 3126891913 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 6db37f19-2cf1-4804-9ea9-3755f15d45c6 c4e275678dd1b8b9934ae8d300c5b88f {"aliquot_tag": "ALQ_be1e1354", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.RNA-Seq.S3_L001_R2.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R2_001.fastq.gz 3477799413 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 b79cba98-e659-47ce-b313-15389cf4dea3 e0117ef134b776be3f2626a1ac852bb7 {"aliquot_tag": "ALQ_be1e1354", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.RNA-Seq.transcriptome.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.transcriptome.gdc_realn.bam 8655801560 BAM transcriptome harmonized CPTAC3 f08c7c2e-5994-4b09-ac06-967cb8e65fc1 e61074173b233ff53de608e4c51975ac {"aliquot_tag": "ALQ_7ab0e2bb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.RNA-Seq.transcriptome.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.transcriptome.gdc_realn.bam 8568964253 BAM transcriptome harmonized CPTAC3 6b0f4c57-3c21-4b4f-ad07-2b6be55b5994 0b05df38986d0ba8783001afe0faa57c {"aliquot_tag": "ALQ_be1e1354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.WGS.N C3L-04408 LSCC WGS blood_normal CPT0285820002 CPT0285820002.WholeGenome.RP-2158.bam 26047707163 BAM submitted_aligned CPTAC3 6915800c-5570-4161-8495-4176e117d84f a1135bd38b44c234c49e4ffd8e7b35c7 {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04408.WGS.N.hg38 C3L-04408 LSCC WGS blood_normal CPT0285820002 f74707b1-70dd-42ca-90f2-acae0b761eed_wgs_gdc_realn.bam 77045791474 BAM harmonized CPTAC3 ab0d9bba-a79f-42d5-b891-fd83ea48ee87 89338fc379d07770615e7484f362b491 {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04408.WGS.T C3L-04408 LSCC WGS tumor CPT0284600006 CPT0284600006.WholeGenome.RP-2158.bam 22001221086 BAM submitted_aligned CPTAC3 6ba01002-54df-43c3-a1bd-d10bea94292f 1fa6bac07c74cdfc7ea71117b408b11d {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.WGS.T.hg38 C3L-04408 LSCC WGS tumor CPT0284600006 d8122677-3787-48ef-9182-08b6a6a0d32a_wgs_gdc_realn.bam 63055932486 BAM harmonized CPTAC3 1193c011-222b-4e7c-bc97-30d6a39d344b ca9b9d11e831685f4095596ff7a2ea95 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.WXS.A C3L-04408 LSCC WXS tissue_normal CPT0284610006 CPT0284610006.WholeExome.RP-1303.bam 26825997271 BAM submitted_aligned CPTAC3 7ae40560-cbee-4ea7-9c2b-57ede09cd5d2 02db2597b52215ec8d97d2bed127ee8e {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.WXS.A.hg38 C3L-04408 LSCC WXS tissue_normal CPT0284610006 ea89e674-3df1-494b-be3b-5a1551c4aba8_wxs_gdc_realn.bam 37952990905 BAM harmonized CPTAC3 f321b4b8-41de-4595-a014-49178e570723 da56459f52f9e38d5493a6ce52eb106a {"aliquot_tag": "ALQ_13c12775", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04408.WXS.N C3L-04408 LSCC WXS blood_normal CPT0285820002 CPT0285820002.WholeExome.RP-1303.bam 39120091683 BAM submitted_aligned CPTAC3 f6defcc6-d73a-4937-9e96-bd49e7bdde4f e1b80ea7515c3cd110ea6aeb257d5c9e {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04408.WXS.N.hg38 C3L-04408 LSCC WXS blood_normal CPT0285820002 f74707b1-70dd-42ca-90f2-acae0b761eed_wxs_gdc_realn.bam 52321917355 BAM harmonized CPTAC3 ebca201a-de02-4e3c-af29-ee8ab15f4ff0 67cbfe37e7b8dc7a7d4a99283a71358f {"aliquot_tag": "ALQ_cf71f378", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04408.WXS.T C3L-04408 LSCC WXS tumor CPT0284600006 CPT0284600006.WholeExome.RP-1303.bam 25782794076 BAM submitted_aligned CPTAC3 7d40169a-8341-4ddb-8632-8915b9653d70 e3f936302444f57db9068680b26263b2 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04408.WXS.T.hg38 C3L-04408 LSCC WXS tumor CPT0284600006 d8122677-3787-48ef-9182-08b6a6a0d32a_wxs_gdc_realn.bam 35361806218 BAM harmonized CPTAC3 dad6c0ee-b61e-4cc2-9c54-64ff0095511b 0948496b35cb1d7e9e44caa88b6ba7e2 {"aliquot_tag": "ALQ_2ea10ec5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.MethArray.Green.A C3L-04409 LSCC Methylation_Array tissue_normal CPT0284340006 204367490061_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c07d77c7-d85b-4a9c-980b-2e231a4a3996 402e9fa628a005fdfdf5b5430fdb3e80 {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04409.MethArray.Green.T C3L-04409 LSCC Methylation_Array tumor CPT0284320006 204372030022_R03C01_Grn.idat 13677905 IDAT Green NA CPTAC3 76b3dc2e-4081-4044-8af2-9c4c9bd6cc7a 01419033b5aef7ed725e1dddad908d91 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.MethArray.Red.A C3L-04409 LSCC Methylation_Array tissue_normal CPT0284340006 204367490061_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 a6c27b60-9076-4a60-85d3-8e9a6193f7fc 547fffbf2cd81b696fc81539b1da6e0c {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04409.MethArray.Red.T C3L-04409 LSCC Methylation_Array tumor CPT0284320006 204372030022_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 9320403e-fdd2-4ac8-9b9f-d9407fc414d5 07965e01f9f9bf12de42bd2d55aa9409 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.miRNA-Seq.S18_L008_R1.T C3L-04409 LSCC miRNA-Seq tumor CPT0284320009 200224_UNC31-K00269_0267_AHC722BBXY_GTCCGC_S18_L008_R1_001.unaln.bam 223684758 BAM S18_L008_R1 submitted_unaligned CPTAC3 89417943-a8b8-4561-a068-a52fb830a4d3 0c623dba5577e0b0339a3b34dc106989 {"aliquot_tag": "ALQ_9413d187", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.miRNA-Seq.T.hg38 C3L-04409 LSCC miRNA-Seq tumor CPT0284320009 b5e7d0a7-3e64-4f63-bbf3-3dc5eb2dce2e_mirnaseq_gdc_realn.bam 249007952 BAM harmonized CPTAC3 0560f4e7-9dfa-4ae1-8bcf-90b51101f9e8 652df742b63cc40a317a67099e1a8d20 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.RNA-Seq.chimeric.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.chimeric.gdc_realn.bam 34456460 BAM chimeric harmonized CPTAC3 1b6d9cd1-a433-4262-b54c-06e70d545433 b3bbde5163783040469690e4dbb5ad90 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.RNA-Seq.genomic.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.genomic.gdc_realn.bam 8377548131 BAM genomic harmonized CPTAC3 1e0939aa-ab8e-4633-a78f-f82fbb7cfc47 176cc0dad305611a6d80eee41f5e3582 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.RNA-Seq.S2_L001_R1.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 3768250785 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 3cdd6265-3ac5-47f8-b323-dc6bb6b12930 a65a40a7160f2eba343bb74a6482a0f4 {"aliquot_tag": "ALQ_9413d187", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.RNA-Seq.S2_L001_R2.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 4267899311 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 17b4edc1-eb6b-459d-8bbb-0763f336df32 42ac9f35bb977b5f146678cc3ac4d7b6 {"aliquot_tag": "ALQ_9413d187", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.RNA-Seq.transcriptome.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.transcriptome.gdc_realn.bam 9615160014 BAM transcriptome harmonized CPTAC3 28bffd85-9a2b-4d3b-97a0-9560eccedf7b f02d420e2be698aac7e5af969f172ab2 {"aliquot_tag": "ALQ_9413d187", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.WGS.N C3L-04409 LSCC WGS blood_normal CPT0285790002 CPT0285790002.WholeGenome.RP-2158.bam 29506415090 BAM submitted_aligned CPTAC3 bfceb32c-10f6-4bd6-b8f3-b6bcddc36f98 2cbc1361be27b884822fd70931e14550 {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04409.WGS.N.hg38 C3L-04409 LSCC WGS blood_normal CPT0285790002 0cbade83-4b62-4a62-8cff-6a43e26ec405_wgs_gdc_realn.bam 87643866032 BAM harmonized CPTAC3 fca9b34d-230b-4cea-8541-c74075b3c378 97842bd950844a855c8065db21e1f37b {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04409.WGS.T C3L-04409 LSCC WGS tumor CPT0284320006 CPT0284320006.WholeGenome.RP-2158.bam 23961113305 BAM submitted_aligned CPTAC3 b524a883-8206-4bf5-a4c6-b7b2a25771b6 0c519ec227c50c1b02154744d42df297 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.WGS.T.hg38 C3L-04409 LSCC WGS tumor CPT0284320006 0355f102-39d4-45dd-b8fe-5882fa1b3f65_wgs_gdc_realn.bam 69407582494 BAM harmonized CPTAC3 c9198356-c57b-442b-ae1c-246bb941236a 71c7feeb8cbc7f3fe6b758e068ec30bd {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.WXS.A C3L-04409 LSCC WXS tissue_normal CPT0284340006 CPT0284340006.WholeExome.RP-1303.bam 37663217851 BAM submitted_aligned CPTAC3 de92e6db-5aa2-4751-a5c9-2baa6a986359 29a0bec5fe29c455939905a3a0882710 {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04409.WXS.A.hg38 C3L-04409 LSCC WXS tissue_normal CPT0284340006 1f97f93b-b5bc-4249-b55c-0559b4974dbc_wxs_gdc_realn.bam 53024970038 BAM harmonized CPTAC3 ad952fc2-a5cf-46ec-92a4-efea628b8488 a302bd7a747c756b361044f9b8db9536 {"aliquot_tag": "ALQ_8bec39b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04409.WXS.N C3L-04409 LSCC WXS blood_normal CPT0285790002 CPT0285790002.WholeExome.RP-1303.bam 27744960066 BAM submitted_aligned CPTAC3 859cae9d-2d75-4e89-bc77-52e892bf06ec cde8f4f88ec49cf798aa59262e5166a3 {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04409.WXS.N.hg38 C3L-04409 LSCC WXS blood_normal CPT0285790002 0cbade83-4b62-4a62-8cff-6a43e26ec405_wxs_gdc_realn.bam 36885042855 BAM harmonized CPTAC3 dc69714c-7f06-44c9-8b97-e3c81750e98c de29a57b5538fed6fe66227f3783030b {"aliquot_tag": "ALQ_49f770bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04409.WXS.T C3L-04409 LSCC WXS tumor CPT0284320006 CPT0284320006.WholeExome.RP-1303.bam 18696521735 BAM submitted_aligned CPTAC3 fff4aaab-7147-469c-97ee-a9c8b85f9ccb 82f4464a7ae1107277acf2b8950f1b73 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04409.WXS.T.hg38 C3L-04409 LSCC WXS tumor CPT0284320006 0355f102-39d4-45dd-b8fe-5882fa1b3f65_wxs_gdc_realn.bam 26320712167 BAM harmonized CPTAC3 562c51ac-5809-49c1-bc11-c82c84d31f34 204240d50cdb9ea50eed49a4a3df4647 {"aliquot_tag": "ALQ_4accc16", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.MethArray.Green.A C3L-04410 LSCC Methylation_Array tissue_normal CPT0284490006 204372030074_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 411fece2-88ee-4723-9d4a-87595f754504 69c7e7926f710a6840130a6d728a1f4b {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.MethArray.Green.T C3L-04410 LSCC Methylation_Array tumor CPT0284470006 204372030106_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b7597f61-8018-4b3d-a18e-9e17da91d3ea 941ea0d88106a91cbd219ec11feaa013 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.MethArray.Red.A C3L-04410 LSCC Methylation_Array tissue_normal CPT0284490006 204372030074_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 e7d31600-486e-4f5f-83ac-aa9ffdff0aac c1e17505ac0f0a8d4716ed555100201e {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.MethArray.Red.T C3L-04410 LSCC Methylation_Array tumor CPT0284470006 204372030106_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 eaa55eba-65bd-4c14-8ccf-18a772bb3ff9 5bf83a32a35ba2f52737caeb4d742ca3 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.miRNA-Seq.A.hg38 C3L-04410 LSCC miRNA-Seq tissue_normal CPT0284490009 370bc377-8746-4164-b503-d16f12ba80ad_mirnaseq_gdc_realn.bam 334311950 BAM harmonized CPTAC3 4ba98c9a-6d26-4478-91fc-d357877ef08b f8c990779599816e9bb129a27725d467 {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.miRNA-Seq.S14_L005_R1.A C3L-04410 LSCC miRNA-Seq tissue_normal CPT0284490009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GCCAAT_S14_L005_R1_001.unaln.bam 307675827 BAM S14_L005_R1 submitted_unaligned CPTAC3 5923c826-fa42-483a-841b-9ecb3dc59672 05ed413ba2b27e2186371cc17897ba4d {"aliquot_tag": "ALQ_fec6d02e", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.miRNA-Seq.S20_L008_R1.T C3L-04410 LSCC miRNA-Seq tumor CPT0284470009 200224_UNC31-K00269_0267_AHC722BBXY_GTGGCC_S20_L008_R1_001.unaln.bam 245614612 BAM S20_L008_R1 submitted_unaligned CPTAC3 022be749-6937-4adb-932c-93ee22c63721 81a317f3547d8e648b78361e648c6fe9 {"aliquot_tag": "ALQ_41f66e4f", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.miRNA-Seq.T.hg38 C3L-04410 LSCC miRNA-Seq tumor CPT0284470009 139d98af-0cae-4e91-be1a-8a838ea630ba_mirnaseq_gdc_realn.bam 270871650 BAM harmonized CPTAC3 1247e480-aca8-4f5c-8ea6-ff2e3cef4d41 1c61974be74cf1a6bebca097aa9b9221 {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.RNA-Seq.chimeric.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.chimeric.gdc_realn.bam 29096056 BAM chimeric harmonized CPTAC3 8b1b92a7-fdee-4bd9-a960-854bce4672a9 674f12e466d0dccc73d7250f039727ad {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.RNA-Seq.chimeric.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.chimeric.gdc_realn.bam 29950070 BAM chimeric harmonized CPTAC3 e59b0a99-0fce-40fd-adcd-95d2c79e1bf2 be8bf4802ef450ab0fdd1ae33f11ca5d {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.RNA-Seq.genomic.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.genomic.gdc_realn.bam 7632568158 BAM genomic harmonized CPTAC3 4c03ff67-8bfc-46d8-a8b2-fce20f0bd5c8 4c2036d4b4eb48e8bc5859870d20137a {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.RNA-Seq.genomic.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.genomic.gdc_realn.bam 8061463669 BAM genomic harmonized CPTAC3 5ff1fddc-004b-4160-9448-f359b91d97eb 426aeca5995775b0662e9d4eab80f1df {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.RNA-Seq.S4_L001_R1.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R1_001.fastq.gz 3847762279 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 5c562fe8-ab90-4894-a916-70639384266b 7ada3faf3d252e39c8c509eff8442cc5 {"aliquot_tag": "ALQ_41f66e4f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.RNA-Seq.S4_L001_R2.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R2_001.fastq.gz 4322814786 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 b1563fb9-5b45-412d-aa9d-f8bdae672abe 9dd7d68f638a79008eb8e080c7ed16bd {"aliquot_tag": "ALQ_41f66e4f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.RNA-Seq.S6_L006_R1.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R1_001.fastq.gz 3910935753 FASTQ S6_L006_R1 submitted_unaligned CPTAC3 19640734-3489-487d-83cd-b266bb249147 85a10421c1219b940fef76de4516f8a8 {"aliquot_tag": "ALQ_fec6d02e", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.RNA-Seq.S6_L006_R2.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R2_001.fastq.gz 4194200637 FASTQ S6_L006_R2 submitted_unaligned CPTAC3 e482f4fd-5cca-4c2a-828f-c154e9f64c4a 5a52f7f9b313f8415188dd3f4f131a59 {"aliquot_tag": "ALQ_fec6d02e", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.RNA-Seq.transcriptome.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.transcriptome.gdc_realn.bam 10544509433 BAM transcriptome harmonized CPTAC3 854bef7f-9782-462f-a065-4f0f67d91902 7101bfebdb716194fe7327375bd2fc6d {"aliquot_tag": "ALQ_fec6d02e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.RNA-Seq.transcriptome.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.transcriptome.gdc_realn.bam 10169294799 BAM transcriptome harmonized CPTAC3 78896108-3ad4-4417-ae1b-197210b518f3 a23ee878cad786ea191934571b068f54 {"aliquot_tag": "ALQ_41f66e4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.WGS.N C3L-04410 LSCC WGS blood_normal CPT0285830002 CPT0285830002.WholeGenome.RP-2158.bam 24297696890 BAM submitted_aligned CPTAC3 9bec8282-6380-41e9-922e-2c466b1d59a5 89cecf569115fae9399d1612fe0272ec {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04410.WGS.N.hg38 C3L-04410 LSCC WGS blood_normal CPT0285830002 ddaede42-d686-4b86-8706-ec0d5aa1165d_wgs_gdc_realn.bam 74503866000 BAM harmonized CPTAC3 51138aec-609f-4285-95d2-8d47f3b7b906 cd3dc6abe7a440f0d6ee338beebacfca {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04410.WGS.T C3L-04410 LSCC WGS tumor CPT0284470006 CPT0284470006.WholeGenome.RP-2158.bam 23081113790 BAM submitted_aligned CPTAC3 4ca863a2-d2c0-4a73-b135-ba3674283585 0cef71fb0108b898e07a3b44fcf1e4a7 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.WGS.T.hg38 C3L-04410 LSCC WGS tumor CPT0284470006 32552864-05a8-479f-a894-db75882384c1_wgs_gdc_realn.bam 68395924949 BAM harmonized CPTAC3 48f97379-47bf-487c-b22a-4881b9570c1d 08354f828179e264287d7780ed8a2067 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.WXS.A C3L-04410 LSCC WXS tissue_normal CPT0284490006 CPT0284490006.WholeExome.RP-1303.bam 23739255633 BAM submitted_aligned CPTAC3 4ebd50e7-e5a6-47d1-afec-46b8821ba6b0 d7283e9b25f3f7b09cdc10f72dfa72cc {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.WXS.A.hg38 C3L-04410 LSCC WXS tissue_normal CPT0284490006 2f54a0f9-f8c5-42e0-a85a-566cc62c8234_wxs_gdc_realn.bam 33705773724 BAM harmonized CPTAC3 636237a2-94c0-408e-bf74-2a18e1d9b9fb c060892de20dc9b1cb662730d161b968 {"aliquot_tag": "ALQ_6e79cdbf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04410.WXS.N C3L-04410 LSCC WXS blood_normal CPT0285830002 CPT0285830002.WholeExome.RP-1303.bam 21112562710 BAM submitted_aligned CPTAC3 fc40cf54-dacf-452a-9d47-9bf283794f06 0c14ca0f16f3cb79f307af4f19fa074b {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04410.WXS.N.hg38 C3L-04410 LSCC WXS blood_normal CPT0285830002 ddaede42-d686-4b86-8706-ec0d5aa1165d_wxs_gdc_realn.bam 28239502560 BAM harmonized CPTAC3 3227bf61-7ac0-446e-b650-00b7878c8b55 f5b516aedd1ef0589e351aec424ddb88 {"aliquot_tag": "ALQ_f211dac8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04410.WXS.T C3L-04410 LSCC WXS tumor CPT0284470006 CPT0284470006.WholeExome.RP-1303.bam 20622011364 BAM submitted_aligned CPTAC3 3be795d8-afcf-4549-b2b7-243d1053051d 816c26ed6ca82cf2326b93a9a4a0b209 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04410.WXS.T.hg38 C3L-04410 LSCC WXS tumor CPT0284470006 32552864-05a8-479f-a894-db75882384c1_wxs_gdc_realn.bam 28406652022 BAM harmonized CPTAC3 d2ed06cc-9c01-4d84-a717-0cfe2c31f8ee f8453db4a2a2f8d5ac15ff025228a140 {"aliquot_tag": "ALQ_d14973de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04473.MethArray.Green.T C3L-04473 PDA Methylation_Array tumor CPT0238710007 203561450073_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 11f79671-9b2f-4bdb-bde8-b1debfbb5ead 0773d26ee08ff54de31e306771f6fd09 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.MethArray.Red.T C3L-04473 PDA Methylation_Array tumor CPT0238710007 203561450073_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 4c8a14b6-c02a-4eb7-b3d8-a841b28c35df dd4687efd04dfad1686184a899826c49 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.miRNA-Seq.S43_L005_R1.T C3L-04473 PDA miRNA-Seq tumor CPT0238710010 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGGCC_S43_L005_R1_001.unaln.bam 188659787 BAM S43_L005_R1 submitted_unaligned CPTAC3 049db0b3-c57d-4212-bf6e-958143c523d3 9367a576d8f4e9f8d9218f951f47a165 {"aliquot_tag": "ALQ_b22f1686", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.miRNA-Seq.T.hg38 C3L-04473 PDA miRNA-Seq tumor CPT0238710010 971bafab-60f2-47d6-b67c-2ccbe8b85d9e_mirnaseq_gdc_realn.bam 214125282 BAM harmonized CPTAC3 42804d2e-1761-4fa6-a0e2-8f66ee8d2625 0fe0bbc4007905531b6cf7d30ac8e00c {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.RNA-Seq.chimeric.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.chimeric.gdc_realn.bam 31856615 BAM chimeric harmonized CPTAC3 08a4dcb2-7514-42a9-b214-43f707107338 dd6f0c3b9ad9ab15e8e3bde8b0614007 {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.RNA-Seq.genomic.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.genomic.gdc_realn.bam 7728975687 BAM genomic harmonized CPTAC3 31df5983-cc2a-46a1-aa6c-53a330985c3b 7cf11bca9b59d5826ef6611ca6b70a9b {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.RNA-Seq.S15_L004_R1.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R1_001.fastq.gz 3636785373 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 9f4306d1-39ce-420f-82b3-c7032d285625 b2489131a9f67719b2b320f0435f95e2 {"aliquot_tag": "ALQ_b22f1686", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.RNA-Seq.S15_L004_R2.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R2_001.fastq.gz 3934885118 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 a4cc8660-e78b-4c32-ac99-6cc2baa67b6d e5ca33a8ccc869bb51ec3924965a2f9f {"aliquot_tag": "ALQ_b22f1686", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.RNA-Seq.transcriptome.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.transcriptome.gdc_realn.bam 9806096797 BAM transcriptome harmonized CPTAC3 ea34b8d7-c055-48b1-b6cd-96f83f6f001a bf8824510e3be1803ac4cc4133001342 {"aliquot_tag": "ALQ_b22f1686", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.Targeted.T C3L-04473 PDA Targeted_Sequencing tumor CPT0238710007 CPT0238710007.CustomSelection.RP-1303.PDO-18786.bam 5077344682 BAM submitted_aligned CPTAC3 c3c6b717-5346-43c1-a3f2-fcf963573244 1317744946c8aaca99a62341014ca288 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.Targeted.T.hg38 C3L-04473 PDA Targeted_Sequencing tumor CPT0238710007 3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_targetedsequencing_gdc_realn.bam 7033845839 BAM harmonized CPTAC3 fd8e0d5c-cd3c-4a7e-a030-2937c386b81e ef7ad57cb57271de28d648ff8d86226e {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.WGS.N C3L-04473 PDA WGS blood_normal CPT0238750002 CPT0238750002.WholeGenome.RP-1303.bam 67068129016 BAM submitted_aligned CPTAC3 36b57ba8-c127-4755-b320-d92c794100d5 faba75f40446774e1545648627af5b5b {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04473.WGS.N.hg38 C3L-04473 PDA WGS blood_normal CPT0238750002 04647a29-ea3a-414e-9087-cbc7da3dc358_wgs_gdc_realn.bam 99432240175 BAM harmonized CPTAC3 1b7cb28b-6f79-412d-bfb2-a51570017a54 773d41fe135b12f2b63fbfcc40f6baae {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04473.WGS.T C3L-04473 PDA WGS tumor CPT0238710007 CPT0238710007.WholeGenome.RP-1303.bam 75174666342 BAM submitted_aligned CPTAC3 e2c532c1-eb4c-4581-8941-be59c258164b fae22f98036619658b79c061ec18703d {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.WGS.T.hg38 C3L-04473 PDA WGS tumor CPT0238710007 3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_wgs_gdc_realn.bam 108219075922 BAM harmonized CPTAC3 ffb2eec6-0b15-452c-b504-90f3899edb47 d63c77f7058f818e05c32d5d6b49541f {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.WXS.N C3L-04473 PDA WXS blood_normal CPT0238750002 CPT0238750002.WholeExome.RP-1303.bam 28519606351 BAM submitted_aligned CPTAC3 8ba82d52-fe94-476f-9a33-10d058b1104f 5af6d320e129255559e71cd28a654519 {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04473.WXS.N.hg38 C3L-04473 PDA WXS blood_normal CPT0238750002 04647a29-ea3a-414e-9087-cbc7da3dc358_wxs_gdc_realn.bam 39718257056 BAM harmonized CPTAC3 1439785e-0e61-46a2-af71-d867ce04088e 3dcbf8603f7f1c1123319a48fb80e747 {"aliquot_tag": "ALQ_b0bae02b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04473.WXS.T C3L-04473 PDA WXS tumor CPT0238710007 CPT0238710007.WholeExome.RP-1303.bam 48884425817 BAM submitted_aligned CPTAC3 69c86247-b65f-4d0d-975e-46d4c5eabba9 a8d4d64fe8cebdedeba6fd45512c5ba6 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04473.WXS.T.hg38 C3L-04473 PDA WXS tumor CPT0238710007 3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_wxs_gdc_realn.bam 67866411308 BAM harmonized CPTAC3 1573766c-77f8-4956-97d8-bf950f54b631 2f260b322d3b68a025ba9642a4e510f7 {"aliquot_tag": "ALQ_3550b264", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.MethArray.Green.A C3L-04475 PDA Methylation_Array tissue_normal CPT0248320006 203561450008_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 099fb4cb-e30f-468a-ab0e-ef240f9e0be7 5bf32258a457bf709291a6e78cb216ee {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.MethArray.Green.T C3L-04475 PDA Methylation_Array tumor CPT0238820008 203561620072_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dce8220b-1674-491b-8817-dbc59aaf42f1 3d9e4ccb42d8e2421e13e58dd7b41e5a {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.MethArray.Red.A C3L-04475 PDA Methylation_Array tissue_normal CPT0248320006 203561450008_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 39b45b51-6e8f-4fa6-8da8-39d06104678a 9a382634ab707f18289382f951a7c04f {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.MethArray.Red.T C3L-04475 PDA Methylation_Array tumor CPT0238820008 203561620072_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3d288890-ffc9-4149-af54-2b08d7241a28 82634928af30c5a525eedfe139f6b6c6 {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.miRNA-Seq.A.hg38 C3L-04475 PDA miRNA-Seq tissue_normal CPT0248320009 c0c0a07e-f00f-426f-a250-7d13537f358f_mirnaseq_gdc_realn.bam 215481389 BAM harmonized CPTAC3 7bc262a2-033f-4198-9086-ad454ee34b34 ef15894d279aaef9016753550d1050d2 {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.miRNA-Seq.S27_L003_R1.A C3L-04475 PDA miRNA-Seq tissue_normal CPT0248320009 190813_UNC32-K00270_0196_AH5MCWBBXY_TATAAT_S27_L003_R1_001.unaln.bam 188082455 BAM S27_L003_R1 submitted_unaligned CPTAC3 91a1403d-29ff-44c6-8f23-22c22c7432a2 6381fede1ef6906be76c1d1c4af95243 {"aliquot_tag": "ALQ_41caebc", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.miRNA-Seq.S44_L005_R1.T C3L-04475 PDA miRNA-Seq tumor CPT0238820011 190712_UNC32-K00270_0192_BH7HL3BBXY_GTTTCG_S44_L005_R1_001.unaln.bam 212888643 BAM S44_L005_R1 submitted_unaligned CPTAC3 c11207da-f434-44b6-9e42-c197e37e13b5 572ef0eff229acb57176eceeca205936 {"aliquot_tag": "ALQ_73deee15", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.miRNA-Seq.T.hg38 C3L-04475 PDA miRNA-Seq tumor CPT0238820011 6a3a5e69-3b24-439e-9603-c0e24c7736ea_mirnaseq_gdc_realn.bam 248005318 BAM harmonized CPTAC3 7781ac53-e536-457e-9955-6d428ee7c487 a589d053033038d9c4ba3b171d026011 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.RNA-Seq.chimeric.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.chimeric.gdc_realn.bam 40259738 BAM chimeric harmonized CPTAC3 63afd3d7-b70f-417a-a893-0ed7177b18fe 93c8f5bc9f73416834741958d55430d2 {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.RNA-Seq.chimeric.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.chimeric.gdc_realn.bam 33106792 BAM chimeric harmonized CPTAC3 f1d8c638-c538-4de9-98ea-08a66b35bab0 a7856e22a38d0d641335aee3d1c8c657 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.RNA-Seq.genomic.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.genomic.gdc_realn.bam 8393458748 BAM genomic harmonized CPTAC3 4a959573-325a-4240-bf33-5dced950d1cc 95ef814ffe3604341fd01d32ddee7d02 {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.RNA-Seq.genomic.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.genomic.gdc_realn.bam 7746588670 BAM genomic harmonized CPTAC3 86563bd1-d456-4bd9-be7b-c3b32910b6ab d71d4a066739a2813cdf37647b376797 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.RNA-Seq.S14_L004_R1.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R1_001.fastq.gz 3778418614 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 a8a064eb-7b13-4787-a851-54149dc5efc1 0a5f9bb893b7398c02f3a15da126eddc {"aliquot_tag": "ALQ_41caebc", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.RNA-Seq.S14_L004_R1.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R1_001.fastq.gz 3522404258 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 30d19a9a-ea38-4aef-bb05-c5b0f3a039ac c1dc9e8706c9013b9e6e3f12c09ade70 {"aliquot_tag": "ALQ_73deee15", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.RNA-Seq.S14_L004_R2.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R2_001.fastq.gz 4408642109 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 33d050c4-19aa-41c1-b3bf-4621fb774485 c1ac4ac1cf6353bc9542da94987a5dcd {"aliquot_tag": "ALQ_41caebc", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.RNA-Seq.S14_L004_R2.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R2_001.fastq.gz 3938909364 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 a2efd595-9842-4520-b7af-c47a68b62967 059c7e53f3a7012c58bffb3d0df81218 {"aliquot_tag": "ALQ_73deee15", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.RNA-Seq.transcriptome.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.transcriptome.gdc_realn.bam 10630287515 BAM transcriptome harmonized CPTAC3 951950ee-6768-462a-9ca3-82d24c991143 479edc379aff6c59aac560b7c1ea002e {"aliquot_tag": "ALQ_41caebc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.RNA-Seq.transcriptome.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.transcriptome.gdc_realn.bam 9841128102 BAM transcriptome harmonized CPTAC3 d8e1ca6a-919e-42ed-b6b1-2ec5f6dd3cf5 b64534f5e7b7103a52bbaa4166e34984 {"aliquot_tag": "ALQ_73deee15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.Targeted.T C3L-04475 PDA Targeted_Sequencing tumor CPT0238820008 CPT0238820008.CustomSelection.RP-1303.PDO-18786.bam 4147639861 BAM submitted_aligned CPTAC3 5d15c9d0-381d-411b-9c2a-adca336f59e4 aaf7e3710f0bc209f16f759e2ff56e7e {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.Targeted.T.hg38 C3L-04475 PDA Targeted_Sequencing tumor CPT0238820008 219e156e-14e1-4e82-a09d-cba6cab0db1e_targetedsequencing_gdc_realn.bam 5844457746 BAM harmonized CPTAC3 d24a7953-1be1-479b-83a9-fad9bef7e8ab fcc7dab438971902350d5a71af3c701c {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.WGS.N C3L-04475 PDA WGS blood_normal CPT0238860002 CPT0238860002.WholeGenome.RP-1303.bam 63094510512 BAM submitted_aligned CPTAC3 13cecd7c-8c89-4352-961f-3ff747ecffb6 82a65490364ad64b832614f8d058f770 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04475.WGS.N.hg38 C3L-04475 PDA WGS blood_normal CPT0238860002 2bc0c8b9-2aca-4e33-b45e-1ba44ca3e4fc_wgs_gdc_realn.bam 91614213187 BAM harmonized CPTAC3 17238a3b-90bd-478b-883f-b61a6aa3bedf eef380451fe068ffc27bbfb943f167e4 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04475.WGS.T C3L-04475 PDA WGS tumor CPT0238820008 CPT0238820008.WholeGenome.RP-1303.bam 68086334744 BAM submitted_aligned CPTAC3 064a23e9-5187-4955-8cf4-e8da40151fef 660d6b0451cc3a03c9366090a28af71f {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.WGS.T.hg38 C3L-04475 PDA WGS tumor CPT0238820008 219e156e-14e1-4e82-a09d-cba6cab0db1e_wgs_gdc_realn.bam 100990298700 BAM harmonized CPTAC3 17fc61d6-0f01-45ee-8087-b78de8984763 eaaa18a3f32af1605412ace77b504f9d {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.WXS.A C3L-04475 PDA WXS tissue_normal CPT0248320006 CPT0248320006.WholeExome.RP-1303.bam 18967532521 BAM submitted_aligned CPTAC3 96ade4ca-c898-48d5-9b57-d88585d47740 d256ec3e5ee122118331e8c7572a9585 {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.WXS.A.hg38 C3L-04475 PDA WXS tissue_normal CPT0248320006 758d3779-5da1-4fb8-be2e-486c27d83603_wxs_gdc_realn.bam 26014707586 BAM harmonized CPTAC3 400ea884-1691-4894-8b04-8a123c5f0a74 71cc36563392ab98bb8a731bd660d84b {"aliquot_tag": "ALQ_94a3b32d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04475.WXS.N C3L-04475 PDA WXS blood_normal CPT0238860002 CPT0238860002.WholeExome.RP-1303.bam 28296849974 BAM submitted_aligned CPTAC3 307e696f-82e8-45c6-b8e5-0b4b187dd9f6 933ab0ef0d7872cce57678b264920fd1 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04475.WXS.N.hg38 C3L-04475 PDA WXS blood_normal CPT0238860002 2bc0c8b9-2aca-4e33-b45e-1ba44ca3e4fc_wxs_gdc_realn.bam 39092044263 BAM harmonized CPTAC3 1e4f182e-d572-4fa9-82e8-4427d5d3b0e0 f411044511817c2860cb04bed5c52db4 {"aliquot_tag": "ALQ_64c282e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04475.WXS.T C3L-04475 PDA WXS tumor CPT0238820008 CPT0238820008.WholeExome.RP-1303.bam 44272983059 BAM submitted_aligned CPTAC3 5ba4264d-cf91-4713-af9a-2f12addc7c5a 4097b27a80f45759a7de96c9ec319ec5 {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04475.WXS.T.hg38 C3L-04475 PDA WXS tumor CPT0238820008 219e156e-14e1-4e82-a09d-cba6cab0db1e_wxs_gdc_realn.bam 62311499181 BAM harmonized CPTAC3 39338f38-a824-41dc-8fb4-0dcaa0586ca2 3ac8b508129068b16d7a57a324a3f085 {"aliquot_tag": "ALQ_131967f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.MethArray.Green.A C3L-04479 PDA Methylation_Array tissue_normal CPT0238940007 203561620050_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2072157f-6806-4dab-a4b3-3e9e92c6c873 0f3326887280db80482199cceba25cc3 {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04479.MethArray.Green.T C3L-04479 PDA Methylation_Array tumor CPT0238920007 203561450023_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a9e93344-6886-426d-8d56-6d1dab5564b7 c2e8bef2f34788f91dbecd0f7e14ecf6 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.MethArray.Red.A C3L-04479 PDA Methylation_Array tissue_normal CPT0238940007 203561620050_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 1f4656e1-0c0d-47ed-8266-6a0f5e464e8f 78966a004001155f0305202d0e5c2c73 {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04479.MethArray.Red.T C3L-04479 PDA Methylation_Array tumor CPT0238920007 203561450023_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 c4626521-377c-4c28-8c95-64ccfd036617 71dbe2826e3500790a68f6f717fccc61 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.miRNA-Seq.S45_L005_R1.T C3L-04479 PDA miRNA-Seq tumor CPT0238920010 190712_UNC32-K00270_0192_BH7HL3BBXY_CGTACG_S45_L005_R1_001.unaln.bam 196693533 BAM S45_L005_R1 submitted_unaligned CPTAC3 23b3d8b0-eeb9-4e2a-ace1-02e8c5090ce0 dc6a54547cb122c115e507e847012272 {"aliquot_tag": "ALQ_cf850d26", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.miRNA-Seq.T.hg38 C3L-04479 PDA miRNA-Seq tumor CPT0238920010 e93be60f-e553-4512-9f25-63d1439d21d0_mirnaseq_gdc_realn.bam 221334831 BAM harmonized CPTAC3 4e03b311-b192-4013-b80f-e720d1233358 f451b707524204343ee9248f6f50a2e2 {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.RNA-Seq.chimeric.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.chimeric.gdc_realn.bam 28403361 BAM chimeric harmonized CPTAC3 8e057a29-722e-417c-961b-0a8a8b2a9090 5d4e9479f79d3adaa66f4cb84b62829b {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.RNA-Seq.genomic.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.genomic.gdc_realn.bam 7689071568 BAM genomic harmonized CPTAC3 931f4b42-3c47-4f0f-ad3a-4a156da6ae21 0e98f22215b9bb14f7f2d06f29fa1a4f {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.RNA-Seq.S13_L004_R1.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R1_001.fastq.gz 3539480313 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 0a0446f6-2bd9-4e7a-b205-4489e718fd1f 8410b13f2db7877df228d953d0d46dd6 {"aliquot_tag": "ALQ_cf850d26", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.RNA-Seq.S13_L004_R2.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R2_001.fastq.gz 3922836348 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 ea7cae74-cb6b-4d52-a75f-82d1935e4ed3 d76768ed19426259a4a0bb361b48e6ba {"aliquot_tag": "ALQ_cf850d26", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.RNA-Seq.transcriptome.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.transcriptome.gdc_realn.bam 9846289486 BAM transcriptome harmonized CPTAC3 9496ccd5-0c73-4c1f-a4ef-05f6266c5790 cde0a1b6a9753ca8693678923dcc3a57 {"aliquot_tag": "ALQ_cf850d26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.Targeted.T C3L-04479 PDA Targeted_Sequencing tumor CPT0238920007 CPT0238920007.CustomSelection.RP-1303.PDO-18786.bam 4044801744 BAM submitted_aligned CPTAC3 fd7a5fe2-274b-45fe-96b9-f4939d75a518 6c659529f7aca816ed60c52320bb28ba {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.Targeted.T.hg38 C3L-04479 PDA Targeted_Sequencing tumor CPT0238920007 f67393d1-1d00-4c93-8268-e2e118602160_targetedsequencing_gdc_realn.bam 6051263237 BAM harmonized CPTAC3 2137fcc4-9fbe-4f35-8ae3-8881a0ade708 174c81c4098a37c25b4693b1e6673e8c {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.WGS.N C3L-04479 PDA WGS blood_normal CPT0238950002 CPT0238950002.WholeGenome.RP-1303.bam 57546056908 BAM submitted_aligned CPTAC3 0272b063-4e3f-4bba-b3f1-34b32463ed92 d9f7ef68b4c2f5508bc2476402877311 {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04479.WGS.N.hg38 C3L-04479 PDA WGS blood_normal CPT0238950002 a6eb5b09-7144-45f2-9ea8-2f05457aa440_wgs_gdc_realn.bam 83455298662 BAM harmonized CPTAC3 3f8032aa-b17d-408e-b800-fb1716196c0d 942c628d6c459a64f9b860475630d0d7 {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04479.WGS.T C3L-04479 PDA WGS tumor CPT0238920007 CPT0238920007.WholeGenome.RP-1303.bam 72805329001 BAM submitted_aligned CPTAC3 9e712980-c355-4831-b091-e53532aaceea b9f9e09f61df061fc0aa3b659e96f6d6 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.WGS.T.hg38 C3L-04479 PDA WGS tumor CPT0238920007 f67393d1-1d00-4c93-8268-e2e118602160_wgs_gdc_realn.bam 107868221031 BAM harmonized CPTAC3 d193537d-6e11-4a26-bfee-72399c8099fc 308dc45cfb7c74edb6db7651f76b9b21 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.WXS.A C3L-04479 PDA WXS tissue_normal CPT0238940007 CPT0238940007.WholeExome.RP-1303.bam 24805852974 BAM submitted_aligned CPTAC3 9ddedab0-9743-4efa-903a-b2971d082df2 a5e94d2999a26d9844733671fa1d813f {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04479.WXS.A.hg38 C3L-04479 PDA WXS tissue_normal CPT0238940007 50c48ada-b816-485a-875e-bd89f302f3bd_wxs_gdc_realn.bam 34272496265 BAM harmonized CPTAC3 b53ef914-1675-4592-abe1-aa1ffbf8a14f 0323a55547243a506a7d34d3f2a676ac {"aliquot_tag": "ALQ_c7ba5c64", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04479.WXS.N C3L-04479 PDA WXS blood_normal CPT0238950002 CPT0238950002.WholeExome.RP-1303.bam 26446253757 BAM submitted_aligned CPTAC3 1a3548d0-8695-4220-adcf-6a4908138a22 39aa002e54b8aaeb14893f1664abccac {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04479.WXS.N.hg38 C3L-04479 PDA WXS blood_normal CPT0238950002 a6eb5b09-7144-45f2-9ea8-2f05457aa440_wxs_gdc_realn.bam 36552905667 BAM harmonized CPTAC3 cc12df9a-deba-436f-87a4-b924e725c1ee e3ddef28d6d4792ec61f8c8cda162b6a {"aliquot_tag": "ALQ_8ab0815b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04479.WXS.T C3L-04479 PDA WXS tumor CPT0238920007 CPT0238920007.WholeExome.RP-1303.bam 83097181422 BAM submitted_aligned CPTAC3 cf62e6e6-e051-4b23-930a-df7b78629df1 6a8340895399e30a4cf3dcf316043792 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04479.WXS.T.hg38 C3L-04479 PDA WXS tumor CPT0238920007 f67393d1-1d00-4c93-8268-e2e118602160_wxs_gdc_realn.bam 116007719875 BAM harmonized CPTAC3 a7adae54-d0b6-45aa-a4a1-cdc16fb06e79 266aa90c91078865aed023d0fe7f7890 {"aliquot_tag": "ALQ_48faa9c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04483.MethArray.Green.Tbm C3L-04483 AML Methylation_Array tumor_bone_marrow CPT0280240002 205589740002_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 560f2532-b83f-479d-bf16-16196872adb8 4ca53fe3b3a581cefdd81570cee66367 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.MethArray.Red.Tbm C3L-04483 AML Methylation_Array tumor_bone_marrow CPT0280240002 205589740002_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 a38647e1-3d07-4378-895b-510d07968910 fe2ff9a0e6e6a6d342ca2c643e9de4a5 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.miRNA-Seq.S12_L001_R1.Tbm C3L-04483 AML miRNA-Seq tumor_bone_marrow CPT0280250002 210702_UNC32-K00270_0289_AHKJ22BBXY_GCCAAT_S12_L001_R1_001.unaln.bam 300397036 BAM S12_L001_R1 submitted_unaligned CPTAC3 9bd8c421-bc81-4bb1-a693-17dba4f0a439 cec667e1b8ce4a1b5e1c18266d1e7e4d {"aliquot_tag": "ALQ_8ef223a9", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.miRNA-Seq.Tbm.hg38 C3L-04483 AML miRNA-Seq tumor_bone_marrow CPT0280250002 ad91e6a4-7dba-4753-bd28-85f24e4f46e5_mirnaseq_gdc_realn.bam 340255398 BAM harmonized CPTAC3 d63e54ee-025f-4ba9-b336-b456044ddc23 1216122380aefe963d26060feebac0bd {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.RNA-Seq.chimeric.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.chimeric.gdc_realn.bam 51206229 BAM chimeric harmonized CPTAC3 c158f449-cbdc-48b7-9d8f-8ede57e3f824 fdf86b1ea33b7d80ca955315b02c34c0 {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.RNA-Seq.genomic.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.genomic.gdc_realn.bam 7759602247 BAM genomic harmonized CPTAC3 326bea76-8325-4d77-88ab-04647cf30911 11c3fa0ce49713b107b3c058d69fd96c {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.RNA-Seq.S28_L007_R1.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 3883362168 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 1ece23d9-50e4-4840-9368-54b95b44af41 3864638805af4c5067bd04f51b6b1156 {"aliquot_tag": "ALQ_8ef223a9", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.RNA-Seq.S28_L007_R2.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4097126030 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 553777bf-1ca0-42a7-a5b0-af7bf80dafd7 1d9c902852f84c3aea4d0fb2e257c705 {"aliquot_tag": "ALQ_8ef223a9", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.RNA-Seq.transcriptome.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.transcriptome.gdc_realn.bam 8951713858 BAM transcriptome harmonized CPTAC3 48724126-02bc-4c27-9dd6-712ebc452196 fc6b20b1e25f1fdec9cef449a4170e6b {"aliquot_tag": "ALQ_8ef223a9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.WGS.Nbc C3L-04483 AML WGS buccal_normal CPT0280230001 CPT0280230001.WholeGenome.RP-2158.bam 52119646344 BAM submitted_aligned CPTAC3 5836be83-3435-401e-8a6f-6e76dacb5e90 cfc3cd0bffd6adce0cf44831b80a9dcb {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04483.WGS.Nbc.hg38 C3L-04483 AML WGS buccal_normal CPT0280230001 702c3b45-dda9-4164-83d6-3bc4d436ad83_wgs_gdc_realn.bam 164113953203 BAM harmonized CPTAC3 708e41fa-402b-44c6-8464-85e884efcdf0 60a0916ed620569d3175d32668c40408 {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04483.WGS.Tbm C3L-04483 AML WGS tumor_bone_marrow CPT0280240002 CPT0280240002.WholeGenome.RP-2158.bam 50370968345 BAM submitted_aligned CPTAC3 739dc89b-264f-4039-be34-2adcc1d10330 b8994d0af3c7ff6973f939cd3e5abc1e {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.WGS.Tbm.hg38 C3L-04483 AML WGS tumor_bone_marrow CPT0280240002 f1a6c87e-6570-41b1-b355-b12ab88b8481_wgs_gdc_realn.bam 152206566574 BAM harmonized CPTAC3 3f38bb10-5dcf-4db0-9ff4-b35eb84847b6 0086daee5ea210098635f6b2f33c26f9 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.WXS.Nbc C3L-04483 AML WXS buccal_normal CPT0280230001 CPT0280230001.WholeExome.RP-1303.bam 26415771348 BAM submitted_aligned CPTAC3 e6bc0148-0602-41db-9870-b926ef0964b3 3b98a074e07bfa34257bf07b9df926dc {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04483.WXS.Nbc.hg38 C3L-04483 AML WXS buccal_normal CPT0280230001 702c3b45-dda9-4164-83d6-3bc4d436ad83_wxs_gdc_realn.bam 37011386097 BAM harmonized CPTAC3 a2b2218d-0336-4ba8-868c-8cbb6d8ecec1 e4b64dc5a656cac2b0c3f8f9aa78a9e3 {"aliquot_tag": "ALQ_98bb87b3", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04483.WXS.Tbm C3L-04483 AML WXS tumor_bone_marrow CPT0280240002 CPT0280240002.WholeExome.RP-1303.bam 20503831564 BAM submitted_aligned CPTAC3 774319aa-d88f-4bcf-91a3-0217aefdaf59 928005c9de14e11eb061db10040b9158 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04483.WXS.Tbm.hg38 C3L-04483 AML WXS tumor_bone_marrow CPT0280240002 f1a6c87e-6570-41b1-b355-b12ab88b8481_wxs_gdc_realn.bam 28707870850 BAM harmonized CPTAC3 434d6273-0703-43f4-a08e-fe98515df752 c1c8b822e3fc93d500c3963218a03c76 {"aliquot_tag": "ALQ_b3920a19", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04486.MethArray.Green.Tbm C3L-04486 AML Methylation_Array tumor_bone_marrow CPT0280550002 205549610122_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ae02b611-9759-42a7-bd7f-17058c740865 7072b53cf8c6d917199a23b4e047dc5e {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.MethArray.Red.Tbm C3L-04486 AML Methylation_Array tumor_bone_marrow CPT0280550002 205549610122_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 2e5c5a33-d640-4433-a99d-6ec3a95bfeaa a9417ed42235795e0fc96d62bffc70ae {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.miRNA-Seq.S7_L001_R1.Tbm C3L-04486 AML miRNA-Seq tumor_bone_marrow CPT0280560002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAGATC_S7_L001_R1_001.unaln.bam 245269332 BAM S7_L001_R1 submitted_unaligned CPTAC3 4b3aa569-726a-45a0-a6e1-7999ea280178 e7f0ce6efed7aa7af689cb996f1c8e32 {"aliquot_tag": "ALQ_d45769c1", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.miRNA-Seq.Tbm.hg38 C3L-04486 AML miRNA-Seq tumor_bone_marrow CPT0280560002 e43b49a1-e887-4541-9487-8c7a0d6ee918_mirnaseq_gdc_realn.bam 275502334 BAM harmonized CPTAC3 72859891-5e31-4cd4-abb8-24726d0d8f55 425385995aecebe6a6b344a9501cbd32 {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.RNA-Seq.chimeric.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.chimeric.gdc_realn.bam 56733896 BAM chimeric harmonized CPTAC3 0b875311-d782-455a-9f83-33d0399c2094 acca0558b708cc70f535296d399dcb9e {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.RNA-Seq.genomic.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.genomic.gdc_realn.bam 6993049248 BAM genomic harmonized CPTAC3 0a129ac8-826c-4a9c-9ffd-fa6c6ef4ed45 0a9abc589ecdadf52eaa114ac00a830d {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.RNA-Seq.S25_L007_R1.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R1_001.fastq.gz 3505940724 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 97364e63-a98f-41b4-bcc8-a4a2ba459ea3 a0e60e974f3020a539a5490e1876dd7f {"aliquot_tag": "ALQ_d45769c1", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.RNA-Seq.S25_L007_R2.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R2_001.fastq.gz 3682566223 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 270717a8-e9f6-4fae-936c-2abbf8d55a93 2f85f970e9d35953cbbed8bb08f86256 {"aliquot_tag": "ALQ_d45769c1", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.RNA-Seq.transcriptome.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.transcriptome.gdc_realn.bam 8193204367 BAM transcriptome harmonized CPTAC3 a57d0590-baad-47be-a0e6-7f125deaecf6 5ce9380f30a515e03dc896974ddcc00d {"aliquot_tag": "ALQ_d45769c1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.WGS.Nbc C3L-04486 AML WGS buccal_normal CPT0280540001 CPT0280540001.WholeGenome.RP-2158.bam 52605913973 BAM submitted_aligned CPTAC3 cb677994-d79a-4b78-a007-d877b7211d3d 982d69fd657bdfcfff90ac8da802df5e {"aliquot_tag": "ALQ_379e6b1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04486.WGS.Nbc.hg38 C3L-04486 AML WGS buccal_normal CPT0280540001 858c4c14-fba8-42ba-b73e-bc0248fee768_wgs_gdc_realn.bam 168425129082 BAM harmonized CPTAC3 99844d17-85aa-41d8-8dac-ee50133783a6 48f0681a3f8b947473a68d38d6a8e903 {"aliquot_tag": "ALQ_379e6b1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04486.WGS.Tbm C3L-04486 AML WGS tumor_bone_marrow CPT0280550002 CPT0280550002.WholeGenome.RP-2158.bam 47859394740 BAM submitted_aligned CPTAC3 81fa4f55-8e9f-4aaa-8c8b-49c2db791cd9 ead1bc160f13a2960c9eef2b1d2bbcd6 {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.WGS.Tbm.hg38 C3L-04486 AML WGS tumor_bone_marrow CPT0280550002 498dca59-144f-4287-a68a-35999a24634a_wgs_gdc_realn.bam 142452739212 BAM harmonized CPTAC3 7258358e-0e5d-40cb-bf66-47a73d1e835a b6220a9488a1414fa29c633190ef69e2 {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.WXS.Tbm C3L-04486 AML WXS tumor_bone_marrow CPT0280550002 CPT0280550002.WholeExome.RP-1303.bam 27150776670 BAM submitted_aligned CPTAC3 78ae1343-d89a-48e3-ac6c-47071fa4878e 7066e693ab4b7ad9a4d7c8236db18373 {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04486.WXS.Tbm.hg38 C3L-04486 AML WXS tumor_bone_marrow CPT0280550002 498dca59-144f-4287-a68a-35999a24634a_wxs_gdc_realn.bam 37508507909 BAM harmonized CPTAC3 7429a65f-8717-4d9a-a588-cb7fa49d57e8 8cf000dde2f783d86ce2e6576a115b7c {"aliquot_tag": "ALQ_93f71311", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04489.MethArray.Green.Tpb C3L-04489 AML Methylation_Array tumor_peripheral_blood CPT0300020002 205707890036_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 0f0b0459-8bad-4107-8e62-2ca21cc17879 d8e8bdb60b03b809f440be94a43f5cbf {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.MethArray.Red.Tpb C3L-04489 AML Methylation_Array tumor_peripheral_blood CPT0300020002 205707890036_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 4550b3c5-58ac-41fa-901d-564722336276 bcb5ba3e3a01f1e5fcfdad5a89db59bf {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.miRNA-Seq.S10_L001_R1.Tpb C3L-04489 AML miRNA-Seq tumor_peripheral_blood CPT0300030002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L001_R1_001.unaln.bam 306262396 BAM S10_L001_R1 submitted_unaligned CPTAC3 09d5594f-f70e-4108-8605-c4dec5d54a3a f33bd5da367ffe85cc3b1cccc8c3d063 {"aliquot_tag": "ALQ_88e478f4", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.miRNA-Seq.Tpb.hg38 C3L-04489 AML miRNA-Seq tumor_peripheral_blood CPT0300030002 001bf614-6ac0-451b-ae1c-b59472a43b1c_mirnaseq_gdc_realn.bam 338218029 BAM harmonized CPTAC3 7120e31d-f498-48be-a621-a68185485946 8d820e5ba6763564abb73d8d474faabb {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.RNA-Seq.chimeric.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.chimeric.gdc_realn.bam 664049440 BAM chimeric harmonized CPTAC3 a34a044e-4703-483f-96ea-e7ec355dc9bf e41321ae284365bddbd221cc1065691a {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.RNA-Seq.genomic.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.genomic.gdc_realn.bam 9107482825 BAM genomic harmonized CPTAC3 4df595cf-c425-43a8-bdb1-eb0188f5c1f9 da11d3c3a120207cb22a2bf03951426d {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.RNA-Seq.S14_L004_R1.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R1_001.fastq.gz 4091881710 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 893bc095-7b43-4637-8907-176b83942bd4 9c179221561c19917f6a3ecd9aa877f0 {"aliquot_tag": "ALQ_88e478f4", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.RNA-Seq.S14_L004_R2.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R2_001.fastq.gz 4428309615 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 4fbdbc23-e6f9-4b8c-8276-a7ece7600a77 937978555c086573841daa285bf61426 {"aliquot_tag": "ALQ_88e478f4", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.RNA-Seq.transcriptome.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.transcriptome.gdc_realn.bam 7637885479 BAM transcriptome harmonized CPTAC3 a22089c1-2b1b-45a6-8afc-67f6371e47be d188c3d0a97450595b18316bd5fe5a8a {"aliquot_tag": "ALQ_88e478f4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.WGS.Nbc C3L-04489 AML WGS buccal_normal CPT0299980001 CPT0299980001.WholeGenome.RP-2158.bam 64551663126 BAM submitted_aligned CPTAC3 1f718aa5-d4ac-4e59-b114-65e10de6a7ab c58f4764fdd8acdccf2acaac8fb4d843 {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04489.WGS.Nbc.hg38 C3L-04489 AML WGS buccal_normal CPT0299980001 c40e8654-b3db-46cb-a941-a2ca9f597275_wgs_gdc_realn.bam 188675373049 BAM harmonized CPTAC3 a6625c57-93f4-4c2e-b532-8c887d04f22c 08124b04aead061158aecbbaed99f2c5 {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04489.WGS.Tpb C3L-04489 AML WGS tumor_peripheral_blood CPT0300020002 CPT0300020002.WholeGenome.RP-2158.bam 61725265113 BAM submitted_aligned CPTAC3 fd85b48b-8edb-43e3-910d-6224a2d39210 4bf827b980f0539ea93ed3e1236f66c6 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.WGS.Tpb.hg38 C3L-04489 AML WGS tumor_peripheral_blood CPT0300020002 3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wgs_gdc_realn.bam 180784278937 BAM harmonized CPTAC3 a3d3e92c-ed2b-4a4b-8291-040d062ae556 bc712a239b26551de783d10072130217 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.WXS.Nbc C3L-04489 AML WXS buccal_normal CPT0299980001 CPT0299980001.WholeExome.RP-1303.bam 27796943985 BAM submitted_aligned CPTAC3 bb513703-b93b-4ae2-bc12-b45ee0b99470 687da230c19eb175be8f796fb04fac7b {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04489.WXS.Nbc.hg38 C3L-04489 AML WXS buccal_normal CPT0299980001 c40e8654-b3db-46cb-a941-a2ca9f597275_wxs_gdc_realn.bam 98070189416 BAM harmonized CPTAC3 59561b27-a5e3-420d-9f98-63d191c4e74c 0e3fb3b9178dca93695f4ac1b0df96be {"aliquot_tag": "ALQ_dc9e032c", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04489.WXS.Tpb C3L-04489 AML WXS tumor_peripheral_blood CPT0300020002 CPT0300020002.WholeExome.RP-1303.bam 28425899790 BAM submitted_aligned CPTAC3 81eef125-2345-4d4b-a0f3-8e7680f6f31b 0e80d5a420129a1e10ecd07254cdf640 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04489.WXS.Tpb.hg38 C3L-04489 AML WXS tumor_peripheral_blood CPT0300020002 3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wxs_gdc_realn.bam 39139211183 BAM harmonized CPTAC3 0ac42abf-43ea-46f0-a2e0-1b4c2b810106 aa4f5e784f29f431b6438116f62cc684 {"aliquot_tag": "ALQ_b5845144", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-04495.MethArray.Green.A C3L-04495 PDA Methylation_Array tissue_normal CPT0239140007 203561620086_R06C01_Grn.idat 13676237 IDAT Green NA CPTAC3 6be2b94b-9297-499c-a262-43a23847d74e c2919fb1c6a7f7e1d42968e1e3a7a0e0 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04495.MethArray.Green.T C3L-04495 PDA Methylation_Array tumor CPT0239100012 203561620040_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 bf2e7c30-dcdf-4dea-b5d1-7e453f7ab5ac 1cdf4cb4a6e1f6ad6467e2e9edd16849 {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.MethArray.Red.A C3L-04495 PDA Methylation_Array tissue_normal CPT0239140007 203561620086_R06C01_Red.idat 13676237 IDAT Red NA CPTAC3 3d7d6823-5dff-457d-8e1c-5c1c816a8d4b 3b9ae1c78be00a8e894be2fdae8a2ba5 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04495.MethArray.Red.T C3L-04495 PDA Methylation_Array tumor CPT0239100012 203561620040_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 933ae9a6-8ef9-49b0-84d8-0259535aec20 02b7e56a00c96f4d36144d82e8188eaa {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.miRNA-Seq.S17_L006_R1.T C3L-04495 PDA miRNA-Seq tumor CPT0239100015 190712_UNC32-K00270_0192_BH7HL3BBXY_GACGAC_S17_L006_R1_001.unaln.bam 216522026 BAM S17_L006_R1 submitted_unaligned CPTAC3 1583ad51-813e-47f1-9fbd-ec4f32f02829 af7ac73b637e4f634198ad216e106540 {"aliquot_tag": "ALQ_8f0b2310", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.miRNA-Seq.T.hg38 C3L-04495 PDA miRNA-Seq tumor CPT0239100015 033d8cf1-959b-47d5-a607-129079a8c173_mirnaseq_gdc_realn.bam 246360639 BAM harmonized CPTAC3 39357f78-abb8-4e0c-8dcd-9670eed43fc3 b0fb1d628038096e26c29bf15b157bb4 {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.RNA-Seq.chimeric.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.chimeric.gdc_realn.bam 40799038 BAM chimeric harmonized CPTAC3 564a6493-438e-4feb-9c15-54825cf6d0a2 1ca04ff6a5e5d9d53ccce245cbe36106 {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.RNA-Seq.genomic.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.genomic.gdc_realn.bam 8342435953 BAM genomic harmonized CPTAC3 323ab26e-d342-4127-9838-9d667a3009d2 ba3d50ea6572abaa8b5cf796be610cbb {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.RNA-Seq.S11_L003_R1.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R1_001.fastq.gz 3310477843 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 165bff0a-b883-4098-b18f-ff82d102e506 0ba1cbd4cd92f82550ac7c139ae94e3a {"aliquot_tag": "ALQ_8f0b2310", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.RNA-Seq.S11_L003_R2.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R2_001.fastq.gz 3637048729 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 5d7103c9-28f9-4015-8faa-16fc46808618 d15b5797c6b062ee9d3f485345bfe048 {"aliquot_tag": "ALQ_8f0b2310", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.RNA-Seq.transcriptome.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.transcriptome.gdc_realn.bam 8109919530 BAM transcriptome harmonized CPTAC3 94ea282d-3955-44fb-8a6f-84e2f1a1d955 21a82141d63f0565ebb37502d3a90ec6 {"aliquot_tag": "ALQ_8f0b2310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.Targeted.T C3L-04495 PDA Targeted_Sequencing tumor CPT0239100012 CPT0239100012.CustomSelection.RP-1303.PDO-18786.bam 5054387145 BAM submitted_aligned CPTAC3 65896bba-f581-4a74-82af-fc386d89bbc4 aaa237bacbaf2c05a805eafb8c2889ac {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.Targeted.T.hg38 C3L-04495 PDA Targeted_Sequencing tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_targetedsequencing_gdc_realn.bam 6997693977 BAM harmonized CPTAC3 fae2e5dd-443a-44b6-87c4-34ef3e8c9c14 90d2a565cbc71715bffd5e2b032c4876 {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.WGS.N C3L-04495 PDA WGS blood_normal CPT0239150002 CPT0239150002.WholeGenome.RP-1303.bam 71976548906 BAM submitted_aligned CPTAC3 b9b90f86-47fc-4185-82ac-8d84c42b2f2d 44e20e46b1211732a08666c0584c9244 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04495.WGS.N.hg38 C3L-04495 PDA WGS blood_normal CPT0239150002 b3f9a3d2-80f0-4db7-bc8c-e3a45cd91e2b_wgs_gdc_realn.bam 106890095598 BAM harmonized CPTAC3 6376abc5-61d7-45c7-950a-ef8321e16243 fbe1c76b74ecb35633298064c9289267 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04495.WGS.T C3L-04495 PDA WGS tumor CPT0239100012 CPT0239100012.WholeGenome.RP-1303.bam 71927431604 BAM submitted_aligned CPTAC3 7d1d5c1d-00a3-40c5-9607-2aba14939996 a9175669c2958f3023d133afb5f3d75a {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.WGS.T.hg38 C3L-04495 PDA WGS tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_wgs_gdc_realn.bam 106340161792 BAM harmonized CPTAC3 71ebf493-075b-4b39-9a05-0c17fc0b2e16 60743d57edf504b64b6a501b03354065 {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.WXS.A C3L-04495 PDA WXS tissue_normal CPT0239140007 CPT0239140007.WholeExome.RP-1303.bam 22324123294 BAM submitted_aligned CPTAC3 55263021-065f-4b28-ba0a-51500a9bb789 5765b816a46f128b14a8ce012d176c78 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04495.WXS.A.hg38 C3L-04495 PDA WXS tissue_normal CPT0239140007 cb57182c-a626-491a-be3b-8ea883179e8f_wxs_gdc_realn.bam 30384322148 BAM harmonized CPTAC3 b6335cdf-2a33-4416-8a67-3ba0f677679d c0fa0ddec6012ad211a886becca9fa45 {"aliquot_tag": "ALQ_8d9ed5bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04495.WXS.N C3L-04495 PDA WXS blood_normal CPT0239150002 CPT0239150002.WholeExome.RP-1303.bam 29127738199 BAM submitted_aligned CPTAC3 06fa30d1-4132-49dc-8245-42a98a8fe30a 345c5984d6b2c14a7bf6d064175980d7 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04495.WXS.N.hg38 C3L-04495 PDA WXS blood_normal CPT0239150002 b3f9a3d2-80f0-4db7-bc8c-e3a45cd91e2b_wxs_gdc_realn.bam 39969909601 BAM harmonized CPTAC3 19d20b8d-942f-4e2d-8084-e9e4d00175f8 0041da17f3caf63feed5dd2e3634f943 {"aliquot_tag": "ALQ_c0940882", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04495.WXS.T C3L-04495 PDA WXS tumor CPT0239100012 CPT0239100012.WholeExome.RP-1303.bam 42696955248 BAM submitted_aligned CPTAC3 82da46b7-04c4-4c96-af56-66afde853593 d64d983a2c14018b5eb143b8d4eb619b {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04495.WXS.T.hg38 C3L-04495 PDA WXS tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_wxs_gdc_realn.bam 58899842046 BAM harmonized CPTAC3 cc7ace0c-4b41-4b67-977b-7669e12f1547 4e04ee9c8217baf0e0d7dc90c890960e {"aliquot_tag": "ALQ_116fb6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04496.RNA-Seq.chimeric.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.chimeric.gdc_realn.bam 176513117 BAM chimeric harmonized CPTAC3 2b4748c9-379e-4371-b688-10f696c97411 4f7cd2a1219cb4e1c003a9555c56452f {"aliquot_tag": "ALQ_5dbda989", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04496.RNA-Seq.genomic.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.genomic.gdc_realn.bam 8913342157 BAM genomic harmonized CPTAC3 3faece61-f08e-40a6-b305-712719ec69ab 6cec8871753b0329b91f0b96be5ef54e {"aliquot_tag": "ALQ_5dbda989", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04496.RNA-Seq.S64_R1.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R1_001.fastq.gz 5632256532 FASTQ S64_R1 submitted_unaligned CPTAC3 ad7050e7-829c-4255-adf9-fcc5bb6a0786 a5cc154480b6b94529b6e2b2eb051004 {"aliquot_tag": "ALQ_5dbda989", "sample": "S64", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04496.RNA-Seq.S64_R2.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R2_001.fastq.gz 5719709301 FASTQ S64_R2 submitted_unaligned CPTAC3 e89fca3c-3404-4fdb-afd8-95f8698c0b41 922233e3d258b98c57512c27cada7988 {"aliquot_tag": "ALQ_5dbda989", "sample": "S64", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04496.RNA-Seq.transcriptome.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.transcriptome.gdc_realn.bam 5594905231 BAM transcriptome harmonized CPTAC3 b7c4c215-dfc1-40ab-9536-166929f09406 66515ef196a812c8af4ec74917170281 {"aliquot_tag": "ALQ_5dbda989", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04505.MethArray.Green.Tbm C3L-04505 AML Methylation_Array tumor_bone_marrow CPT0260200002 203561450068_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4a519a86-b13b-4767-a21c-584ddf88f6de a69512f3651f2a626f8975abd79a4ba6 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.MethArray.Red.Tbm C3L-04505 AML Methylation_Array tumor_bone_marrow CPT0260200002 203561450068_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 726f778d-267d-4778-81f5-ce8157a2e3bd 6f5eed506ed34f9cfb36406c3ca1e3d7 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.miRNA-Seq.S25_L002_R1.Tbm C3L-04505 AML miRNA-Seq tumor_bone_marrow CPT0260220002 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTGAT_S25_L002_R1_001.unaln.bam 208980673 BAM S25_L002_R1 submitted_unaligned CPTAC3 fe8147c1-656c-4755-b707-ba73be4934a4 69d2f017d2038d0d301fe3db9c7e4e71 {"aliquot_tag": "ALQ_2958ed8b", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.miRNA-Seq.Tbm.hg38 C3L-04505 AML miRNA-Seq tumor_bone_marrow CPT0260220002 8c3c5eb8-b82d-46b6-85d6-cd7c5be3c732_mirnaseq_gdc_realn.bam 228448541 BAM harmonized CPTAC3 f494f859-8150-486e-b4ec-09e6cd967f5c 4ff7e6bd69b438f2075033464adde4ff {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.RNA-Seq.chimeric.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.chimeric.gdc_realn.bam 47623569 BAM chimeric harmonized CPTAC3 9eb0e99b-b15a-45e8-a5cb-293ecba7ec0e b24f906677b476f4eae940ae75a6aeae {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.RNA-Seq.genomic.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.genomic.gdc_realn.bam 8721227961 BAM genomic harmonized CPTAC3 0913c28b-dfb6-437f-bc19-e3f24da616b1 0e0abaa2666518bf28e6771042097cf3 {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.RNA-Seq.S19_L006_R1.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R1_001.fastq.gz 4195277363 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 ba291ac6-8d33-47bf-abd9-bec94a701732 d541a66e9f29840857921b749a7a659d {"aliquot_tag": "ALQ_2958ed8b", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.RNA-Seq.S19_L006_R2.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R2_001.fastq.gz 4661956424 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 5557fd11-809c-49a6-b118-7e7ca5e54935 ad7bcaf251127ba4ed71a29bd3fe72da {"aliquot_tag": "ALQ_2958ed8b", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.RNA-Seq.transcriptome.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.transcriptome.gdc_realn.bam 9015987746 BAM transcriptome harmonized CPTAC3 cc57bbe8-a738-4fb3-8072-86768a4faa7b ac230de01d7f6ca5e86f94579e486f8d {"aliquot_tag": "ALQ_2958ed8b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.WGS.Nbc C3L-04505 AML WGS buccal_normal CPT0260190002 CPT0260190002.WholeGenome.RP-1303.bam 75024756758 BAM submitted_aligned CPTAC3 149ecc0f-5f99-4867-bb26-bd3f6123f1f6 e9e2926cd0b5fff4013ea991c598aac9 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04505.WGS.Nbc.hg38 C3L-04505 AML WGS buccal_normal CPT0260190002 a3a5280c-83e2-460b-9dfb-9d1c5b7f38bb_wgs_gdc_realn.bam 107625952032 BAM harmonized CPTAC3 1f46e1d8-e1bc-47a3-95b5-841d6ef1fc43 2da9e8c684070c367e8ff49e7268df41 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04505.WGS.Tbm C3L-04505 AML WGS tumor_bone_marrow CPT0260200002 CPT0260200002.WholeGenome.RP-1303.bam 67617021929 BAM submitted_aligned CPTAC3 ef2315bf-84bc-4dbe-8288-acb1f66b8242 ef01e900247afc7bf907d0273788c641 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.WGS.Tbm.hg38 C3L-04505 AML WGS tumor_bone_marrow CPT0260200002 94a8b257-0c7d-456d-86b4-df80ae095a53_wgs_gdc_realn.bam 99185869192 BAM harmonized CPTAC3 947c69cd-c679-42d6-865e-2697bb566e2d 5e8a2a811e6cd0b6e8cef4309af56786 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.WXS.Nbc C3L-04505 AML WXS buccal_normal CPT0260190002 CPT0260190002.WholeExome.RP-1303.bam 25682414995 BAM submitted_aligned CPTAC3 b47af3fc-2f60-43a5-8f77-af1d1678cade f2c2e6292d4784e9496920533e4dd5d4 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04505.WXS.Nbc.hg38 C3L-04505 AML WXS buccal_normal CPT0260190002 a3a5280c-83e2-460b-9dfb-9d1c5b7f38bb_wxs_gdc_realn.bam 35791175469 BAM harmonized CPTAC3 43f12e45-3829-4c28-bb38-135b74b32a68 7eb060ad6aa965e3b905a39b7c76b4a3 {"aliquot_tag": "ALQ_d81cae34", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04505.WXS.Tbm C3L-04505 AML WXS tumor_bone_marrow CPT0260200002 CPT0260200002.WholeExome.RP-1303.bam 23467812539 BAM submitted_aligned CPTAC3 c9b4d06c-49fe-4da6-bffb-6f96ece1e387 b5193c5726cf91cdc6c07211976fa753 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04505.WXS.Tbm.hg38 C3L-04505 AML WXS tumor_bone_marrow CPT0260200002 94a8b257-0c7d-456d-86b4-df80ae095a53_wxs_gdc_realn.bam 32774233045 BAM harmonized CPTAC3 7e4a4227-1c33-498b-921a-1098fafdf043 86deab56dd4730d1aec40331339265d6 {"aliquot_tag": "ALQ_5398beeb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.MethArray.Green.Tbm C3L-04508 AML Methylation_Array tumor_bone_marrow CPT0260410002 203561620064_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 8d8e6632-6889-4035-89bc-c02b5bc569bf 28bb2058671f3480928d28c7e0a75a1d {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.MethArray.Red.Tbm C3L-04508 AML Methylation_Array tumor_bone_marrow CPT0260410002 203561620064_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 674da194-d8a5-473d-a64f-707be22cf5b1 93a74c5ddb6480df0a77524493b1bcb4 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.miRNA-Seq.S1_L003_R1.Tbm C3L-04508 AML miRNA-Seq tumor_bone_marrow CPT0260420002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L003_R1_001.unaln.bam 357516687 BAM S1_L003_R1 submitted_unaligned CPTAC3 ae825b24-4d64-4b5c-90fd-92f3ecb0d3db 56a197298fb7cf51ce3e83f58b8dba39 {"aliquot_tag": "ALQ_ff010e96", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.miRNA-Seq.Tbm.hg38 C3L-04508 AML miRNA-Seq tumor_bone_marrow CPT0260420002 47c1b0cd-77c4-4fb1-b97f-298185dfe2bd_mirnaseq_gdc_realn.bam 390705894 BAM harmonized CPTAC3 c499f060-59ed-49f2-bada-cfc8ceb6eaf4 0f44b320ef41aea6fbe223da2907ed70 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.RNA-Seq.chimeric.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.chimeric.gdc_realn.bam 50016037 BAM chimeric harmonized CPTAC3 03183bdf-1feb-4077-9f4c-de08db883fee b8aa1032d3f4ae3eb115999784d30e60 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.RNA-Seq.genomic.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.genomic.gdc_realn.bam 9249246885 BAM genomic harmonized CPTAC3 eb8a80ec-42ec-496d-bcc0-a0ae095bbe2a c5d3004567344f2194a982f61c5b0762 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.RNA-Seq.S5_L002_R1.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R1_001.fastq.gz 4562468942 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 030e9e72-38d2-4d03-a9bd-fe44189eb0c1 d68d87df125466318490723db95cb303 {"aliquot_tag": "ALQ_ff010e96", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.RNA-Seq.S5_L002_R2.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R2_001.fastq.gz 5038034529 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 9e9e843f-3b4f-4fd4-9f51-6bc02b3d1a91 1f9be3c4e20cc3f6c5a040978c32a02c {"aliquot_tag": "ALQ_ff010e96", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.RNA-Seq.transcriptome.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.transcriptome.gdc_realn.bam 10263600128 BAM transcriptome harmonized CPTAC3 0c30d624-3a5b-4beb-8b63-b32648608ab4 72ed56052ad681730030ca9244bbb369 {"aliquot_tag": "ALQ_ff010e96", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.WGS.Tbm C3L-04508 AML WGS tumor_bone_marrow CPT0260410002 CPT0260410002.WholeGenome.RP-1303.bam 61188913765 BAM submitted_aligned CPTAC3 2fddfc53-64ea-4583-88ea-e568e06c6ad0 82c090d1dcd0a1b82547a09d63080030 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.WGS.Tbm.hg38 C3L-04508 AML WGS tumor_bone_marrow CPT0260410002 fdb0ac1e-04ff-42a2-b94e-e0601601bd3f_wgs_gdc_realn.bam 90844622922 BAM harmonized CPTAC3 cc0aee4c-9d1f-42de-9753-a19867f49f6c c0f6fb23e54606e53274b517f91127a4 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.WXS.Nbc C3L-04508 AML WXS buccal_normal CPT0260400003 CPT0260400003.WholeExome.RP-1303.bam 20217568361 BAM submitted_aligned CPTAC3 142af992-b115-4035-8f65-5c0fdb469f7b 2e2bb82f620a5f63cc3a95016c9782c4 {"aliquot_tag": "ALQ_f2c66d60", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04508.WXS.Nbc.hg38 C3L-04508 AML WXS buccal_normal CPT0260400003 abfc8193-39ad-46cb-a862-43400dcfb1e9_wxs_gdc_realn.bam 28008255853 BAM harmonized CPTAC3 810d5168-1549-4f11-b0ed-c9dce053aae2 30c4ab3e3c5594d1e44bfc17dff311fd {"aliquot_tag": "ALQ_f2c66d60", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04508.WXS.Tbm C3L-04508 AML WXS tumor_bone_marrow CPT0260410002 CPT0260410002.WholeExome.RP-1303.bam 24677692297 BAM submitted_aligned CPTAC3 eeb45233-83e6-4178-8cc2-4d48508d9560 e8698a4dc918e495e15b6d56d6d76287 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04508.WXS.Tbm.hg38 C3L-04508 AML WXS tumor_bone_marrow CPT0260410002 fdb0ac1e-04ff-42a2-b94e-e0601601bd3f_wxs_gdc_realn.bam 34209542719 BAM harmonized CPTAC3 92e1a7b5-1222-4ece-b133-dbe4ea5695ef fac0ba8404599fa7d8a8080bea315f40 {"aliquot_tag": "ALQ_b8a17446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04537.MethArray.Green.T C3L-04537 GBM Methylation_Array tumor CPT0264330006 204367490029_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 63333b06-e989-4723-b5bf-a3eeaa691604 463e3f424f74118223485dfe839d4792 {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.MethArray.Red.T C3L-04537 GBM Methylation_Array tumor CPT0264330006 204367490029_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 687374eb-8fe2-4377-9c33-eb11fbed82ab 6698b55000f0b861ad514dbee48e8ec8 {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.miRNA-Seq.S3_L001_R1.T C3L-04537 GBM miRNA-Seq tumor CPT0264330009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 160338019 BAM S3_L001_R1 submitted_unaligned CPTAC3 e0433688-2cf4-4012-a31c-40858a47f20c a9d726e79b842df3f130d295a107bdd5 {"aliquot_tag": "ALQ_bcf9ea05", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.miRNA-Seq.T.hg38 C3L-04537 GBM miRNA-Seq tumor CPT0264330009 e2c8afe9-1334-41fe-84ea-44ffde88c54b_mirnaseq_gdc_realn.bam 175870324 BAM harmonized CPTAC3 dae48e44-42b5-4715-b6cc-3bedcb382738 2e32777e3889d50fffb0062623c49eda {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.RNA-Seq.chimeric.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.chimeric.gdc_realn.bam 31737144 BAM chimeric harmonized CPTAC3 d79ea2da-e345-40fc-ba2a-f135616ee641 646234d4cf3f84898af61f259a34f05d {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.RNA-Seq.genomic.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.genomic.gdc_realn.bam 7861451470 BAM genomic harmonized CPTAC3 719ec9da-6c6a-48cb-b0db-a555f97e9d17 31483f917ad5e0b5e2329480b59a30ce {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.RNA-Seq.S19_L005_R1.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R1_001.fastq.gz 3611841350 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 adf59d70-7072-4025-8eba-01d2dcd6e667 9f079fe2d490cdefb9cb37efc869c0d0 {"aliquot_tag": "ALQ_bcf9ea05", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.RNA-Seq.S19_L005_R2.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 af74daf39ea1442b2d6bc29a4b53813c {"aliquot_tag": "ALQ_bcf9ea05", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.RNA-Seq.transcriptome.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.transcriptome.gdc_realn.bam 9758852519 BAM transcriptome harmonized CPTAC3 ea32352d-33d3-469d-b550-583b9afe884c 811cfecc3078235254efa21a6bb9d9c4 {"aliquot_tag": "ALQ_bcf9ea05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.WGS.N C3L-04537 GBM WGS blood_normal CPT0265790002 CPT0265790002.WholeGenome.RP-2158.bam 28393863499 BAM submitted_aligned CPTAC3 4c3e04d4-4e57-430d-9ed0-3ba74a599c96 4d7648eb5647ea91c50ba4b8f8db64f6 {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04537.WGS.N.hg38 C3L-04537 GBM WGS blood_normal CPT0265790002 b2eb19a2-f110-438f-b16c-26dc0f691c14_wgs_gdc_realn.bam 84679557904 BAM harmonized CPTAC3 90c46761-ce1b-43f8-ae6a-af25020697fe a95e3329b7a11d65747272ec55ea192e {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04537.WGS.T C3L-04537 GBM WGS tumor CPT0264330006 CPT0264330006.WholeGenome.RP-2158.bam 35253805632 BAM submitted_aligned CPTAC3 b7552f3d-2324-4f5d-a10d-aa1a3b3520df c92bfbb2bc6f91e49f445fd722103a15 {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.WGS.T.hg38 C3L-04537 GBM WGS tumor CPT0264330006 20533eda-81e3-40c8-842b-40b3e338127c_wgs_gdc_realn.bam 105840080534 BAM harmonized CPTAC3 14a5f061-baa1-413d-a21d-4a266877dc04 67b06b4da15fb23c1bf0c385af1a2f0f {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.WXS.N C3L-04537 GBM WXS blood_normal CPT0265790002 CPT0265790002.WholeExome.RP-1303.bam 18886184900 BAM submitted_aligned CPTAC3 084de537-e6d0-47bb-b803-18328837cf04 ad4027d5087622d5cb5de39db5b40730 {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04537.WXS.N.hg38 C3L-04537 GBM WXS blood_normal CPT0265790002 b2eb19a2-f110-438f-b16c-26dc0f691c14_wxs_gdc_realn.bam 25476423801 BAM harmonized CPTAC3 84320c1f-226b-431c-8240-fe28ad4a4894 ed0fbdb742a4496153fd5053b6536dbc {"aliquot_tag": "ALQ_5c7d628e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04537.WXS.T C3L-04537 GBM WXS tumor CPT0264330006 CPT0264330006.WholeExome.RP-1303.bam 16941472007 BAM submitted_aligned CPTAC3 d94de8f2-a9d7-4bcc-a5ca-7fcf6dc65790 0cb624dd9ca72d20f030f117fecd6f3c {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04537.WXS.T.hg38 C3L-04537 GBM WXS tumor CPT0264330006 20533eda-81e3-40c8-842b-40b3e338127c_wxs_gdc_realn.bam 24973995963 BAM harmonized CPTAC3 d2ea7a2e-737f-4704-8731-492f2cd1c8e9 a9a68c2363e480d844d9ed1827fc45ab {"aliquot_tag": "ALQ_2c46f794", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.MethArray.Green.T C3L-04539 GBM Methylation_Array tumor CPT0264350006 204372030085_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f6094fa9-72a0-40a0-b477-635a457bd0a1 8d45a786a862677c1ba68d64ef0a678f {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.MethArray.Red.T C3L-04539 GBM Methylation_Array tumor CPT0264350006 204372030085_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 0243e79d-f860-437d-b8d3-ae877033d6a3 434542391e1717d56f9dbd89613d0408 {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.miRNA-Seq.S4_L001_R1.T C3L-04539 GBM miRNA-Seq tumor CPT0264350009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 175572653 BAM S4_L001_R1 submitted_unaligned CPTAC3 588e9b9c-f58d-442d-8337-96f2f4a8ff5d da1711c418b4771166b969812903db74 {"aliquot_tag": "ALQ_33b91fa5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.miRNA-Seq.T.hg38 C3L-04539 GBM miRNA-Seq tumor CPT0264350009 d7cf6ba2-3742-4f46-b660-a588eeb66304_mirnaseq_gdc_realn.bam 196058858 BAM harmonized CPTAC3 67bdfc12-9aa8-4108-ab7a-2a3baec90666 701fc9094e3355c62bcea06591320c5b {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.RNA-Seq.chimeric.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.chimeric.gdc_realn.bam 30204293 BAM chimeric harmonized CPTAC3 cf12258c-0866-433d-89fa-e652890e2b83 8ca1f1d834ef1bfad28ae0e940ddff40 {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.RNA-Seq.genomic.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.genomic.gdc_realn.bam 7643857120 BAM genomic harmonized CPTAC3 2e77a9cf-6857-47ab-a0f4-9256b7466451 f82e84272263602e7f35dfcee6a1cb00 {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.RNA-Seq.S20_L005_R1.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 9b56e66a-4850-46ec-b519-5379c91aa066 e8747e07e6763ca7c23d24cd8ac16cd2 {"aliquot_tag": "ALQ_33b91fa5", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.RNA-Seq.S20_L005_R2.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 5a856d4a-bb70-45dc-af41-53ec656ffc10 1806f53223d43577fa53667a94e8a692 {"aliquot_tag": "ALQ_33b91fa5", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.RNA-Seq.transcriptome.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.transcriptome.gdc_realn.bam 8130031489 BAM transcriptome harmonized CPTAC3 d6e56972-20d2-4720-aa6f-79725bfc1d4d c268e266075febef9461b6c25a70d096 {"aliquot_tag": "ALQ_33b91fa5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.WGS.N C3L-04539 GBM WGS blood_normal CPT0265800002 CPT0265800002.WholeGenome.RP-2158.bam 35537633707 BAM submitted_aligned CPTAC3 de26b2e4-b960-4ff2-bdb0-ef982fa91c77 b1bb1888ddec94689903269b8ea6d9bd {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04539.WGS.N.hg38 C3L-04539 GBM WGS blood_normal CPT0265800002 56cd7cd6-c6e0-4a44-90df-b10abcd38233_wgs_gdc_realn.bam 106937786996 BAM harmonized CPTAC3 35697bb3-4b0e-498e-86b8-045a3b37c481 ec840a40e77688a67ea020ea3280b40e {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04539.WGS.T C3L-04539 GBM WGS tumor CPT0264350006 CPT0264350006.WholeGenome.RP-2158.bam 25110093183 BAM submitted_aligned CPTAC3 9fe4e777-e8ff-4089-9f15-42ca3ac3d0e7 5c80b62b120630cc1e6f949b8891ece6 {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.WGS.T.hg38 C3L-04539 GBM WGS tumor CPT0264350006 db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wgs_gdc_realn.bam 73888912902 BAM harmonized CPTAC3 340ee94a-a5d8-4417-b332-3d171f38544c 950084732e23b019fad9a7e477a07e37 {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.WXS.N C3L-04539 GBM WXS blood_normal CPT0265800002 CPT0265800002.WholeExome.RP-1303.bam 22916690436 BAM submitted_aligned CPTAC3 7ec1ce3e-b174-4d8c-b4a6-df52f55f7fbd 4267b93069c3af9e3db6f5e04763d5a6 {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04539.WXS.N.hg38 C3L-04539 GBM WXS blood_normal CPT0265800002 56cd7cd6-c6e0-4a44-90df-b10abcd38233_wxs_gdc_realn.bam 32221310803 BAM harmonized CPTAC3 5b6bf6d8-1ba8-40f2-b72c-7209488eb46d 997c3ce8fd8391119e3c1461e04b3e0d {"aliquot_tag": "ALQ_a03bb22a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04539.WXS.T C3L-04539 GBM WXS tumor CPT0264350006 CPT0264350006.WholeExome.RP-1303.bam 18379018263 BAM submitted_aligned CPTAC3 c3a91aa6-8512-457b-8e07-7495071ebab8 ded3753e9ecdfa838646f0797852cf6f {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04539.WXS.T.hg38 C3L-04539 GBM WXS tumor CPT0264350006 db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wxs_gdc_realn.bam 25583695395 BAM harmonized CPTAC3 44d32def-ea17-4d6a-97a9-4326d8d2d45b 97ff62b8e81a7fb377085c66895f2cac {"aliquot_tag": "ALQ_a3060234", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.MethArray.Green.T C3L-04728 LSCC Methylation_Array tumor CPT0304210006 204367490151_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 51fca465-0585-437a-a70b-0d50796fc734 68771749b65987b647873256fb93ff3d {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.MethArray.Red.T C3L-04728 LSCC Methylation_Array tumor CPT0304210006 204367490151_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 5dde43c3-32cc-4515-b322-e3f055c045ac 13367b60ec90be4203c5cf9a9ba9c306 {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.miRNA-Seq.S10_L008_R1.T C3L-04728 LSCC miRNA-Seq tumor CPT0304210009 200224_UNC31-K00269_0267_AHC722BBXY_TAGCTT_S10_L008_R1_001.unaln.bam 223644871 BAM S10_L008_R1 submitted_unaligned CPTAC3 c9247f3b-2fce-49e5-9235-b17f8d74488b 2a3e59920a2721f7baba33d528ae5f8b {"aliquot_tag": "ALQ_dc717704", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.miRNA-Seq.T.hg38 C3L-04728 LSCC miRNA-Seq tumor CPT0304210009 d9a8f749-302b-46d9-8977-a8c1882e0abc_mirnaseq_gdc_realn.bam 247148853 BAM harmonized CPTAC3 e81b44fd-5351-442b-8742-7e4b1eff7e7b f60c73fa2c3984a2c3d1d5fd74b6462a {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.RNA-Seq.chimeric.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.chimeric.gdc_realn.bam 43681674 BAM chimeric harmonized CPTAC3 07d34b8f-f59a-4e86-8ea9-3be918b2b53f 1dda597283a534f6eb3968480cb510c4 {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.RNA-Seq.genomic.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.genomic.gdc_realn.bam 11002863245 BAM genomic harmonized CPTAC3 d8dbb2da-ba68-4181-adf3-022f18a4f7b2 97a4074e695322af831da4ef04cc4721 {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.RNA-Seq.S10_L003_R1.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R1_001.fastq.gz 5549023600 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 53da8d54-81eb-4038-88b2-3196cb814a69 5f0301dca335ecbca6f6c7a81daa71b7 {"aliquot_tag": "ALQ_dc717704", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.RNA-Seq.S10_L003_R2.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R2_001.fastq.gz 5848132575 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 872ca10d-39ab-43d2-a514-281d77055d1e 956bad92b3a6e4ebcf6440254973ce09 {"aliquot_tag": "ALQ_dc717704", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.RNA-Seq.transcriptome.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.transcriptome.gdc_realn.bam 14268836861 BAM transcriptome harmonized CPTAC3 aebb366a-380e-4469-b337-d629b131a4ad 0bb1d8d51062bc286396d9e7d7a5fd4e {"aliquot_tag": "ALQ_dc717704", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.WGS.N C3L-04728 LSCC WGS blood_normal CPT0305060002 CPT0305060002.WholeGenome.RP-2158.bam 21530141327 BAM submitted_aligned CPTAC3 bb954c13-7c4d-4098-8994-fce2233295e3 48def4e16c0dc836931c639a6fd66265 {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04728.WGS.N.hg38 C3L-04728 LSCC WGS blood_normal CPT0305060002 89c144d0-e672-49fe-aa42-b3f957230089_wgs_gdc_realn.bam 63433937050 BAM harmonized CPTAC3 6fb14feb-df82-4a97-aa74-fd1c460c89c2 b219d61cb468c2b87c76abfb2a678deb {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04728.WGS.T C3L-04728 LSCC WGS tumor CPT0304210006 CPT0304210006.WholeGenome.RP-2158.bam 25053735048 BAM submitted_aligned CPTAC3 b507c8f9-863c-470e-a8e8-b3b1743a13e0 6ad557444509bbf7e04befa26e8c37c1 {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.WGS.T.hg38 C3L-04728 LSCC WGS tumor CPT0304210006 774eea8f-1aca-4b74-b987-b20e71621cda_wgs_gdc_realn.bam 72794626135 BAM harmonized CPTAC3 28d030b8-d65f-4e55-be7b-cf10aafbd54b 943c11f56310c3e8234c0afaa08a74ee {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.WXS.N C3L-04728 LSCC WXS blood_normal CPT0305060002 CPT0305060002.WholeExome.RP-1303.bam 22684834998 BAM submitted_aligned CPTAC3 3441574b-3e9f-46ee-a40b-cddab978e1ce 02193c594900fedb42d6e9e51f873495 {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04728.WXS.N.hg38 C3L-04728 LSCC WXS blood_normal CPT0305060002 89c144d0-e672-49fe-aa42-b3f957230089_wxs_gdc_realn.bam 30949530959 BAM harmonized CPTAC3 b7856a20-f923-458e-9f77-0ad88a1f8cec 0337f1388347e82b33186d6bc280dfad {"aliquot_tag": "ALQ_123cd823", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04728.WXS.T C3L-04728 LSCC WXS tumor CPT0304210006 CPT0304210006.WholeExome.RP-1303.bam 23402829524 BAM submitted_aligned CPTAC3 777a095c-7981-4141-82d7-c2282900d6ac 32546cf79f5419c8f68e42a7e52fd41c {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04728.WXS.T.hg38 C3L-04728 LSCC WXS tumor CPT0304210006 774eea8f-1aca-4b74-b987-b20e71621cda_wxs_gdc_realn.bam 32219992369 BAM harmonized CPTAC3 70b75b48-32b4-4ccd-9ce6-80a326fbf594 c0acdf4b63c3254da6769e456820a221 {"aliquot_tag": "ALQ_4cce6a95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.MethArray.Green.T C3L-04731 GBM Methylation_Array tumor CPT0258360006 204372030072_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1b3b805a-00cf-4ec5-ad0d-651d2012513f 4c8dbd7b08ea2fe314d6cb3999ced24d {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.MethArray.Red.T C3L-04731 GBM Methylation_Array tumor CPT0258360006 204372030072_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 1455c5d3-26c7-4671-b7ca-7946ec497ba0 3858f73ac87d4249f225c9a376600bf4 {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.miRNA-Seq.S2_L001_R1.T C3L-04731 GBM miRNA-Seq tumor CPT0258360009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 163649841 BAM S2_L001_R1 submitted_unaligned CPTAC3 7d68a4a1-186b-45cf-9842-1b93139f81aa 0e2fc6c3fc3d5e14cfe8ae54f9e7fe84 {"aliquot_tag": "ALQ_3d3608e2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.miRNA-Seq.T.hg38 C3L-04731 GBM miRNA-Seq tumor CPT0258360009 27acded0-fbca-4101-ad20-cbb61017cb78_mirnaseq_gdc_realn.bam 178901159 BAM harmonized CPTAC3 433f9cf1-b2ca-4468-8451-e0f3a6c74297 e6d4007dc049a2c716e7f3001299f31a {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.RNA-Seq.chimeric.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.chimeric.gdc_realn.bam 23548388 BAM chimeric harmonized CPTAC3 b16e3a89-2b59-47d3-bbfd-0edc8147ba4f bb5003555ce66c20c6c71d04534d8da4 {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.RNA-Seq.genomic.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.genomic.gdc_realn.bam 6525609441 BAM genomic harmonized CPTAC3 b5e0e9ab-cdc6-4ef0-a424-0a12f537e9c1 7c0f2f648362292824504bc27fa38241 {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.RNA-Seq.S18_L005_R1.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 fdcc07bb-3566-4ad0-b8af-832168038559 4a4e55f1119aa6ebdf20db0942ff41d1 {"aliquot_tag": "ALQ_3d3608e2", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.RNA-Seq.S18_L005_R2.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 d82e8a6e-aaca-4d9d-b26e-96046b568d10 41c80d9f58067ca57ae52b5923be8f69 {"aliquot_tag": "ALQ_3d3608e2", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.RNA-Seq.transcriptome.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.transcriptome.gdc_realn.bam 7196254642 BAM transcriptome harmonized CPTAC3 28587aac-0694-47c7-9b27-44f66f3eabc9 56ccb6763c27d338b56a5edc5150ca6e {"aliquot_tag": "ALQ_3d3608e2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.WGS.N C3L-04731 GBM WGS blood_normal CPT0258420002 CPT0258420002.WholeGenome.RP-2158.bam 24023306337 BAM submitted_aligned CPTAC3 5bf7f78d-ac65-472b-b155-cc53b9de62b7 315efec8e111c62279fb3a5a9805ee87 {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04731.WGS.N.hg38 C3L-04731 GBM WGS blood_normal CPT0258420002 580da526-9175-4120-8b85-febc8c389b31_wgs_gdc_realn.bam 72428099741 BAM harmonized CPTAC3 d1a5f165-da82-4896-bd87-83d56f133baa a39015e0c347b175963ea7c94b769014 {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04731.WGS.T C3L-04731 GBM WGS tumor CPT0258360006 CPT0258360006.WholeGenome.RP-2158.bam 25501382330 BAM submitted_aligned CPTAC3 c18a3425-ebed-4e66-8bab-35f8bf4fcb29 a934642f7b3abef9bea83e736e18c9a4 {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.WGS.T.hg38 C3L-04731 GBM WGS tumor CPT0258360006 b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wgs_gdc_realn.bam 73442457570 BAM harmonized CPTAC3 487eb7fd-571b-4593-b357-bbb90037e3c8 54b3eb6740dd4bd8bdbd30b1780b5206 {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.WXS.N C3L-04731 GBM WXS blood_normal CPT0258420002 CPT0258420002.WholeExome.RP-1303.bam 35813867996 BAM submitted_aligned CPTAC3 42c91ebd-2a1f-4930-8383-b5e60d40a502 4ad2113cec871e682249d9837ed20d3d {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04731.WXS.N.hg38 C3L-04731 GBM WXS blood_normal CPT0258420002 580da526-9175-4120-8b85-febc8c389b31_wxs_gdc_realn.bam 48593782996 BAM harmonized CPTAC3 1fbd34a9-fc9d-4c2c-ba3b-96ffed456256 8418032c2ac0c9aef8c83e96e96217be {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04731.WXS.T C3L-04731 GBM WXS tumor CPT0258360006 CPT0258360006.WholeExome.RP-1303.bam 19673439486 BAM submitted_aligned CPTAC3 c4fe1c9a-c8ad-4d80-9f4e-f046c886dae5 a8efa9dbb7abd3bed9213d43d614688d {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04731.WXS.T.hg38 C3L-04731 GBM WXS tumor CPT0258360006 b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wxs_gdc_realn.bam 27379179694 BAM harmonized CPTAC3 b265dc17-8180-4962-8576-87cfde01f80d 46a6dfb7b0d1b6e6583f89080aba698e {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.MethArray.Green.A C3L-04746 LSCC Methylation_Array tissue_normal CPT0279080006 204372030024_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 a8825ca1-fb1e-48ec-9cd6-2131c70996c8 753dbabbaa9d60d63aebd8ccce6aa33b {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.MethArray.Green.T C3L-04746 LSCC Methylation_Array tumor CPT0279010009 204367490048_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 29d7154f-adc3-4363-950e-e79cfb89f50f ab18be313a2ea7fac3e3bdf9ca587b20 {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.MethArray.Red.A C3L-04746 LSCC Methylation_Array tissue_normal CPT0279080006 204372030024_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 3d44d3ca-ee6c-4bf4-965c-55ef379be7bf 3ba3ce1714c3c3c4b2d1d744b9328d22 {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.MethArray.Red.T C3L-04746 LSCC Methylation_Array tumor CPT0279010009 204367490048_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 3087468d-7579-490d-b0fb-d355c044b4f3 09b610eee6ce34ec37dfcf4fdaeff7eb {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.miRNA-Seq.A.hg38 C3L-04746 LSCC miRNA-Seq tissue_normal CPT0279080009 6a3d9456-8cc8-46ec-8c08-ffe28b3a39e3_mirnaseq_gdc_realn.bam 245529205 BAM harmonized CPTAC3 83191fc9-e0ab-48aa-8d4b-e1e311434ab5 4cbcdc92d54705747b805bc836daa69e {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.miRNA-Seq.S12_L007_R1.T C3L-04746 LSCC miRNA-Seq tumor CPT0279010013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GAGTGG_S12_L007_R1_001.unaln.bam 267646206 BAM S12_L007_R1 submitted_unaligned CPTAC3 1be13f42-714e-4730-9c70-be63f4571026 849a0e88d6ff71e26fc868eec32c115f {"aliquot_tag": "ALQ_141e72ca", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.miRNA-Seq.S6_L005_R1.A C3L-04746 LSCC miRNA-Seq tissue_normal CPT0279080009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATGTCA_S6_L005_R1_001.unaln.bam 222072342 BAM S6_L005_R1 submitted_unaligned CPTAC3 f9744b29-8882-4352-9ee4-409ef121a349 257767c2532bd0b807378c733038ef0e {"aliquot_tag": "ALQ_e0c0c8e4", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.miRNA-Seq.T.hg38 C3L-04746 LSCC miRNA-Seq tumor CPT0279010013 0b3b1933-2420-4ccd-82be-63b558395913_mirnaseq_gdc_realn.bam 288594484 BAM harmonized CPTAC3 96f481f5-3a99-49d9-98f3-cb4ada66922f f20249de167096fb3443a02a6db0548d {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.RNA-Seq.chimeric.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.chimeric.gdc_realn.bam 28814950 BAM chimeric harmonized CPTAC3 ce61d4b5-16db-47a2-bcf7-8034432d8e48 0d37163f61cd17f0722df5045acd0490 {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.RNA-Seq.chimeric.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.chimeric.gdc_realn.bam 76300959 BAM chimeric harmonized CPTAC3 6b7738bc-eabe-4494-9cb6-42064f2808e3 ed4683b61b764e180add6be89780aa72 {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.RNA-Seq.genomic.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.genomic.gdc_realn.bam 7327116810 BAM genomic harmonized CPTAC3 531ee9dd-78b9-4c21-a270-e21ebd9118f3 f49a26b07142048424fcb25b6af59bc7 {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.RNA-Seq.genomic.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.genomic.gdc_realn.bam 7883255906 BAM genomic harmonized CPTAC3 f6059728-89e8-4901-b95b-c9a4912cba03 13c3fd1c4a2d8956cfd2faaa367c07c4 {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.RNA-Seq.S15_L008_R1.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R1_001.fastq.gz 3452803753 FASTQ S15_L008_R1 submitted_unaligned CPTAC3 6fa7166d-8384-4103-8c9f-7f5088af16d5 f07c3f9a69e4083604b46d799458429a {"aliquot_tag": "ALQ_e0c0c8e4", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.RNA-Seq.S15_L008_R2.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R2_001.fastq.gz 3854339961 FASTQ S15_L008_R2 submitted_unaligned CPTAC3 65c5378d-ec10-4518-9bf3-f9c9ae0d0e1a 9fac4559a53bbddee125489b7ea44b72 {"aliquot_tag": "ALQ_e0c0c8e4", "sample": "S15", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.RNA-Seq.S21_L006_R1.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R1_001.fastq.gz 3686471434 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 eff0d265-610e-4573-9937-6ce7611a7551 2900520527d13c4caac9b336bc82d88d {"aliquot_tag": "ALQ_141e72ca", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.RNA-Seq.S21_L006_R2.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R2_001.fastq.gz 4157452037 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 e75763ef-0566-46a9-853e-347fcd83ee41 c8203ec697ed4da5ea77aed4097d4e10 {"aliquot_tag": "ALQ_141e72ca", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.RNA-Seq.transcriptome.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.transcriptome.gdc_realn.bam 7705591781 BAM transcriptome harmonized CPTAC3 f3f44b6f-09eb-4f00-9685-8624ad8303a8 8b5d9017f2a1204694e507ede330b913 {"aliquot_tag": "ALQ_e0c0c8e4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.RNA-Seq.transcriptome.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.transcriptome.gdc_realn.bam 9393620648 BAM transcriptome harmonized CPTAC3 4989d874-315a-49e0-832b-9443b3cca92f ee7f44043431eed0f6ab9c2e91d32af8 {"aliquot_tag": "ALQ_141e72ca", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.WGS.N C3L-04746 LSCC WGS blood_normal CPT0279170002 CPT0279170002.WholeGenome.RP-2158.bam 20565972778 BAM submitted_aligned CPTAC3 9853ceef-16c7-48d8-975d-ba1c0dfa6173 28d3948dc0eeab605340f3d40ed052e0 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04746.WGS.N.hg38 C3L-04746 LSCC WGS blood_normal CPT0279170002 5f8cfa01-07c2-4f48-ab0e-31ff66be67df_wgs_gdc_realn.bam 59978343142 BAM harmonized CPTAC3 0935491d-6a06-4602-977e-871773b588a6 460c2d0042d4a0294c7cae372c934086 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04746.WGS.T C3L-04746 LSCC WGS tumor CPT0279010009 CPT0279010009.WholeGenome.RP-2158.bam 23826429502 BAM submitted_aligned CPTAC3 b73d223c-517b-41cf-967a-355c01181b38 b6f9b60aa0b0011162cd21f8c44bacbc {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.WGS.T.hg38 C3L-04746 LSCC WGS tumor CPT0279010009 7c5f9092-ce2b-4a59-b8ed-f368774e6764_wgs_gdc_realn.bam 69496730556 BAM harmonized CPTAC3 801599dd-861c-45b1-8b8a-0796ff39e9a6 489d6720d1608cedda26ce15232a8e26 {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.WXS.A C3L-04746 LSCC WXS tissue_normal CPT0279080006 CPT0279080006.WholeExome.RP-1303.bam 38232874629 BAM submitted_aligned CPTAC3 bc5ae5ab-585e-4b9c-99cb-75a01cabccd7 f0fcf86d249ef01c77425f34ca3a847e {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.WXS.A.hg38 C3L-04746 LSCC WXS tissue_normal CPT0279080006 422a19ae-6222-439d-9c65-ac821135a61a_wxs_gdc_realn.bam 53064243475 BAM harmonized CPTAC3 cc48871d-ae2a-4bd0-95b3-a9bbfcf14f77 caebe992963f9852a05abda560d9bd2d {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04746.WXS.N C3L-04746 LSCC WXS blood_normal CPT0279170002 CPT0279170002.WholeExome.RP-1303.bam 21342680481 BAM submitted_aligned CPTAC3 df436629-2d6d-4892-9a03-d356f72c7981 fdacaf7a3b698a1c86f6a42ebfa55d38 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04746.WXS.N.hg38 C3L-04746 LSCC WXS blood_normal CPT0279170002 5f8cfa01-07c2-4f48-ab0e-31ff66be67df_wxs_gdc_realn.bam 29790309793 BAM harmonized CPTAC3 176d1c3b-1db7-4673-a4eb-98c4def67f56 bba4e552951bf776e9d1cf11a81f2887 {"aliquot_tag": "ALQ_3e1e5518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04746.WXS.T C3L-04746 LSCC WXS tumor CPT0279010009 CPT0279010009.WholeExome.RP-1303.bam 41988640464 BAM submitted_aligned CPTAC3 caa38563-2ef8-42ee-9b55-dc3c03bf70fd 1a569113609ec9b6052de12b8ec233df {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04746.WXS.T.hg38 C3L-04746 LSCC WXS tumor CPT0279010009 7c5f9092-ce2b-4a59-b8ed-f368774e6764_wxs_gdc_realn.bam 56730572467 BAM harmonized CPTAC3 631afdbd-49c7-4021-803d-4df579ad6881 54bd1d41c8d94ace36e10824eb64341b {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.MethArray.Green.A C3L-04749 LSCC Methylation_Array tissue_normal CPT0271400009 204367400087_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 425241c0-9d51-4160-8ef9-a6a1d44aa1c2 4b6c16046d9e8bdc15c3270ccd330b44 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.MethArray.Green.T C3L-04749 LSCC Methylation_Array tumor CPT0271380006 204372030076_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 13b928b8-5120-4186-a8e4-12e1e8449082 22cdb99b9e12a201a7a460e2769bfc0c {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.MethArray.Red.A C3L-04749 LSCC Methylation_Array tissue_normal CPT0271400009 204367400087_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 0272218e-56be-4985-b142-1da901f9a7c0 495181bf6d6d4a325d900136955d32e7 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.MethArray.Red.T C3L-04749 LSCC Methylation_Array tumor CPT0271380006 204372030076_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 7a2254ac-9b47-4885-8ce2-183c66406f43 91464d23f9a886b3897dbc2c9c2f4a08 {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.miRNA-Seq.A.hg38 C3L-04749 LSCC miRNA-Seq tissue_normal CPT0271400006 78b78ca1-df48-4b52-86eb-0a8170d61777_mirnaseq_gdc_realn.bam 275286965 BAM harmonized CPTAC3 697363af-0a8e-4935-be12-c3f47f459cf4 874b149999e818c9c54d2970ee286ca0 {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.miRNA-Seq.S17_L006_R1.T C3L-04749 LSCC miRNA-Seq tumor CPT0271380009 200224_UNC31-K00269_0267_AHC722BBXY_GTAGAG_S17_L006_R1_001.unaln.bam 181009156 BAM S17_L006_R1 submitted_unaligned CPTAC3 ec01ccc8-8b6b-4bc6-abdc-3e7413c63fb8 346205a506d73732d44227dd057e7fa6 {"aliquot_tag": "ALQ_55bbf42d", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.miRNA-Seq.S43_L006_R1.A C3L-04749 LSCC miRNA-Seq tissue_normal CPT0271400006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TACAGC_S43_L006_R1_001.unaln.bam 247431497 BAM S43_L006_R1 submitted_unaligned CPTAC3 b9e6c4a0-972a-4d3d-b390-2692804e0e77 e4383580ff26c10af5093003759b1db4 {"aliquot_tag": "ALQ_e87192c5", "sample": "S43", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.miRNA-Seq.T.hg38 C3L-04749 LSCC miRNA-Seq tumor CPT0271380009 784f5baf-ffdb-4e82-a17e-c00621ec0944_mirnaseq_gdc_realn.bam 200820385 BAM harmonized CPTAC3 965c0262-f225-4fa1-a1e7-6544b0abe5f6 b5cb21595c7273105cd5bf23cdc1f1ae {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.RNA-Seq.chimeric.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.chimeric.gdc_realn.bam 25537797 BAM chimeric harmonized CPTAC3 25c610f1-9d74-46a9-a249-34adedb9e689 4c0012f01726f086ecebde7bc9588240 {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.RNA-Seq.chimeric.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.chimeric.gdc_realn.bam 55848955 BAM chimeric harmonized CPTAC3 71537e85-3722-4d39-a141-2abb7cef3ee1 f08013833391ec59d665b707c7cd8266 {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.RNA-Seq.genomic.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.genomic.gdc_realn.bam 7208850821 BAM genomic harmonized CPTAC3 e1ccd9ee-3b8d-4cd9-9599-22bfb378fa4d 4a4a0040d48b5b4adbc24be3665e154b {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.RNA-Seq.genomic.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.genomic.gdc_realn.bam 8409087059 BAM genomic harmonized CPTAC3 85f44a04-a58c-4734-b18c-7de4e45173cb 34e542f11741048e25bf74665955c1a4 {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.RNA-Seq.S1_L001_R1.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R1_001.fastq.gz 3912060536 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 9851d22e-75a3-4685-92f4-fceddb612a0c 956466fec5e50287c68ea89e64d26ef0 {"aliquot_tag": "ALQ_55bbf42d", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.RNA-Seq.S1_L001_R2.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R2_001.fastq.gz 4338079910 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 1e23a930-3a62-4de6-ac26-2d39621847ec 32ffd599c14cd6676bc42c81f40ff12b {"aliquot_tag": "ALQ_55bbf42d", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.RNA-Seq.S25_L007_R1.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R1_001.fastq.gz 3309872976 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 d1935c39-b390-43d3-87d4-1fd3e222096c 5cab4015e3ecb50e3d0484e43dd9e6cf {"aliquot_tag": "ALQ_e87192c5", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.RNA-Seq.S25_L007_R2.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R2_001.fastq.gz 3968764367 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 c4da1660-db14-4679-955a-499096ee0978 21fb919bff4847231f9579f8d7fcd809 {"aliquot_tag": "ALQ_e87192c5", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.RNA-Seq.transcriptome.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.transcriptome.gdc_realn.bam 8695779514 BAM transcriptome harmonized CPTAC3 2a29ac17-47fb-476e-8e0b-14bce6b30d41 6a76be2366c1866ad7dbc8313c913441 {"aliquot_tag": "ALQ_e87192c5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.RNA-Seq.transcriptome.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.transcriptome.gdc_realn.bam 10222721424 BAM transcriptome harmonized CPTAC3 ac826f9a-8903-4761-a362-85d788fe48eb cbdd808d03e8d3d721025aafef34d691 {"aliquot_tag": "ALQ_55bbf42d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.WGS.N C3L-04749 LSCC WGS blood_normal CPT0271470002 CPT0271470002.WholeGenome.RP-2158.bam 24821097773 BAM submitted_aligned CPTAC3 d9735d16-e7c4-4090-9ca7-8ccf3a1a9901 b9b17b42ee90d01c1b4703e4aec23283 {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04749.WGS.N.hg38 C3L-04749 LSCC WGS blood_normal CPT0271470002 537b8662-9f16-462d-85f1-2517912d16f0_wgs_gdc_realn.bam 75596498859 BAM harmonized CPTAC3 948bad93-2b50-452c-bc20-fbaf4d175be2 96b49d70a9a93a1b53ddd87ee4a8e4e3 {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04749.WGS.T C3L-04749 LSCC WGS tumor CPT0271380006 CPT0271380006.WholeGenome.RP-2158.bam 23997719812 BAM submitted_aligned CPTAC3 24b1eb69-3e2f-49b0-82a4-354e03aa9ecb f343e6b2c044f4a144582108343a20ad {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.WGS.T.hg38 C3L-04749 LSCC WGS tumor CPT0271380006 05c2e83b-4061-4cbe-825f-2fb99b325dae_wgs_gdc_realn.bam 70736499492 BAM harmonized CPTAC3 f13d050a-7955-4d6f-82ad-81b11335cdb9 5ee249674e2b064033f2baec3d8981fa {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.WXS.A C3L-04749 LSCC WXS tissue_normal CPT0271400009 CPT0271400009.WholeExome.RP-1303.bam 23166405711 BAM submitted_aligned CPTAC3 deea33fc-fc78-4f86-a950-cb4ee5bc8c79 39d31ef256dccad29d47e873bc308c37 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.WXS.A.hg38 C3L-04749 LSCC WXS tissue_normal CPT0271400009 684310d4-a1c5-4ade-be4d-e38eb812e777_wxs_gdc_realn.bam 32038467784 BAM harmonized CPTAC3 4977b4c9-aa9c-4d85-83af-9da820d823d2 09edaff489471161974e2a7241f78448 {"aliquot_tag": "ALQ_78ce8f54", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04749.WXS.N C3L-04749 LSCC WXS blood_normal CPT0271470002 CPT0271470002.WholeExome.RP-1303.bam 29988252705 BAM submitted_aligned CPTAC3 c5699ea9-1ea8-411d-be94-5f3caf7ff7cc b9572ba0e171575c31a4c6c44a1f663e {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04749.WXS.N.hg38 C3L-04749 LSCC WXS blood_normal CPT0271470002 537b8662-9f16-462d-85f1-2517912d16f0_wxs_gdc_realn.bam 40152529449 BAM harmonized CPTAC3 5a04c54a-46c6-4b22-9f57-e957bab13f58 b0587e06396e20151448ded07aa4436a {"aliquot_tag": "ALQ_5d3c8acc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04749.WXS.T C3L-04749 LSCC WXS tumor CPT0271380006 CPT0271380006.WholeExome.RP-1303.bam 22618528518 BAM submitted_aligned CPTAC3 6fcafbb7-a541-42be-8a6f-f0a3bccea7ad 75df575a838237273a28a313f87fce17 {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04749.WXS.T.hg38 C3L-04749 LSCC WXS tumor CPT0271380006 05c2e83b-4061-4cbe-825f-2fb99b325dae_wxs_gdc_realn.bam 30716597873 BAM harmonized CPTAC3 ae75aed4-2200-4897-a3b5-a6c86ecd93bc 0854e2208c074082bb65e7723a099b58 {"aliquot_tag": "ALQ_c504e9bc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04757.MethArray.Green.A C3L-04757 LUAD Methylation_Array tissue_normal CPT0255080006 203561620077_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b06e669b-11f8-4e29-8d33-dfd1cc060a40 67f45a22699550c1d763f826ca3fc4ac {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.MethArray.Green.T C3L-04757 LUAD Methylation_Array tumor CPT0255050006 203561450008_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a4377fdc-f9f4-4d08-a587-0b3c21ce8259 3079e46cc76833904ecb4446e8cf7758 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.MethArray.Red.A C3L-04757 LUAD Methylation_Array tissue_normal CPT0255080006 203561620077_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 b822899d-163b-4a64-af1d-b2505db1fcdc 4a23ddf862049baae7b55a54770d7918 {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.MethArray.Red.T C3L-04757 LUAD Methylation_Array tumor CPT0255050006 203561450008_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 ac4300d4-d3f2-4388-b4ba-31ab73976915 4d4c232257addf9a1e052578f16e0bb9 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.miRNA-Seq.A.hg38 C3L-04757 LUAD miRNA-Seq tissue_normal CPT0255080009 1a315b40-cf81-472d-9427-98dee79e74c0_mirnaseq_gdc_realn.bam 196918183 BAM harmonized CPTAC3 fc545074-8a8c-4239-992d-c4c70396dd61 245aacd5564721310172746d53693ea5 {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.miRNA-Seq.S36_L006_R1.A C3L-04757 LUAD miRNA-Seq tissue_normal CPT0255080009 190722_UNC31-K00269_0234_AH7VGTBBXY_TACAGC_S36_L006_R1_001.unaln.bam 174543760 BAM S36_L006_R1 submitted_unaligned CPTAC3 da754e9e-1fa9-4dd9-83c0-e8c85f77e508 7d3a1b43329536b7fc56bd0fe9317152 {"aliquot_tag": "ALQ_6545a5ed", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.miRNA-Seq.S44_L007_R1.T C3L-04757 LUAD miRNA-Seq tumor CPT0255050009 190722_UNC31-K00269_0234_AH7VGTBBXY_TGACCA_S44_L007_R1_001.unaln.bam 200111670 BAM S44_L007_R1 submitted_unaligned CPTAC3 29a78cce-fc3c-4437-824d-940fce1942e6 e4e6b737645a07dcadd628cd080f61d3 {"aliquot_tag": "ALQ_9dd5615c", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.miRNA-Seq.T.hg38 C3L-04757 LUAD miRNA-Seq tumor CPT0255050009 a221a74e-d7fe-4bab-9c68-df41ea69c2dc_mirnaseq_gdc_realn.bam 215731392 BAM harmonized CPTAC3 1348404e-d449-4280-95f9-9c2ca885d336 46aef98444932475d971335c92fb8e16 {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.RNA-Seq.chimeric.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.chimeric.gdc_realn.bam 29740257 BAM chimeric harmonized CPTAC3 6f8dface-5570-449a-b6bf-61834153a141 9e4211db8ae095f0bfacae9a17486152 {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.RNA-Seq.chimeric.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.chimeric.gdc_realn.bam 37375192 BAM chimeric harmonized CPTAC3 3bf19083-c74f-4033-8bb5-956033735cab f907f68c93df9b51e7a0f6437f26ffba {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.RNA-Seq.genomic.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.genomic.gdc_realn.bam 9993317059 BAM genomic harmonized CPTAC3 ba026fe6-10d2-471a-86c7-b9a546fad096 ac33c6fc201ceb81191c38412dd0d6ae {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.RNA-Seq.genomic.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.genomic.gdc_realn.bam 9084569673 BAM genomic harmonized CPTAC3 e94fdeb6-a84f-4b80-bd17-04695862d3c1 0597c844410ce8c606e5bbe40c65c5b5 {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.RNA-Seq.S26_L007_R1.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R1_001.fastq.gz 4127971199 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 d6c9218c-2163-4bda-adec-e85ebb276e8b fb6dda7397752766f8e0b9c4abd5627a {"aliquot_tag": "ALQ_9dd5615c", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.RNA-Seq.S26_L007_R2.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R2_001.fastq.gz 4618961349 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 e87b26c8-71d5-4ffe-81e1-d01202914df5 e621e3eaaaa08f538710c8b6084a09b6 {"aliquot_tag": "ALQ_9dd5615c", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.RNA-Seq.S7_L002_R1.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3401806951 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 a14c65eb-d876-4222-884c-8c05b9831a1f 53f91dce6ca886e8eec1ac04a7470b34 {"aliquot_tag": "ALQ_6545a5ed", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.RNA-Seq.S7_L002_R2.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 3893884814 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 ddb13b87-04eb-4bd3-8edc-f9f053285664 170f85d1bbe7f19ec204a6c9e2c1b50e {"aliquot_tag": "ALQ_6545a5ed", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.RNA-Seq.transcriptome.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.transcriptome.gdc_realn.bam 7304283762 BAM transcriptome harmonized CPTAC3 0e17b885-e8ea-4c2c-aa11-f337331d05db aec9ca8aef2e1cf03247824a7f4db85d {"aliquot_tag": "ALQ_6545a5ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.RNA-Seq.transcriptome.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.transcriptome.gdc_realn.bam 10666666212 BAM transcriptome harmonized CPTAC3 d5aca2c2-739a-4f98-af68-6bf30551447d 43738b211a4e6f50274bda885a34e728 {"aliquot_tag": "ALQ_9dd5615c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.WGS.N C3L-04757 LUAD WGS blood_normal CPT0255190002 CPT0255190002.WholeGenome.RP-1303.bam 66407153660 BAM submitted_aligned CPTAC3 14e3b249-1759-406d-9804-6abd38fb4e44 7caace0ee6c9cb91fc12c9152a67754f {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04757.WGS.N.hg38 C3L-04757 LUAD WGS blood_normal CPT0255190002 1049f508-fe3c-4359-b14a-d38c47dcb7ba_wgs_gdc_realn.bam 97311162997 BAM harmonized CPTAC3 622c8bbc-4f6e-4368-aad0-015fc56a074c f10f6991e5fb267abc91f14f1e566a35 {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04757.WGS.T C3L-04757 LUAD WGS tumor CPT0255050006 CPT0255050006.WholeGenome.RP-1303.bam 60442985525 BAM submitted_aligned CPTAC3 bfa14851-0bc7-49f2-b0c8-3e607ab6901c cbf3a796935d5815b98b34ff23416627 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.WGS.T.hg38 C3L-04757 LUAD WGS tumor CPT0255050006 21adbed6-c6b0-4b46-8a76-bdb0670be9ba_wgs_gdc_realn.bam 89542948262 BAM harmonized CPTAC3 34305f06-2a3d-4e58-9625-3e051b9cb648 de7d809d499b020fa098dab0c7e676a1 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.WXS.A C3L-04757 LUAD WXS tissue_normal CPT0255080006 CPT0255080006.WholeExome.RP-1303.bam 23557028822 BAM submitted_aligned CPTAC3 61a880fb-c2a3-479f-bb0d-4793bd50ed13 111a93cd8d9528918063733b4ec4fff9 {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.WXS.A.hg38 C3L-04757 LUAD WXS tissue_normal CPT0255080006 bd23437a-226c-41a0-aeb7-167c2cb4fc49_wxs_gdc_realn.bam 32753888601 BAM harmonized CPTAC3 ed99b033-b0e3-4ac4-b567-3b3366f486f5 1bef8b1754cf75dfa96161541b29cd42 {"aliquot_tag": "ALQ_f5fab87c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04757.WXS.N C3L-04757 LUAD WXS blood_normal CPT0255190002 CPT0255190002.WholeExome.RP-1303.bam 27698273600 BAM submitted_aligned CPTAC3 7c0638e9-1e32-455c-81dd-cc68dfb3af05 1722729ef3494ba1b808321630d0d377 {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04757.WXS.N.hg38 C3L-04757 LUAD WXS blood_normal CPT0255190002 1049f508-fe3c-4359-b14a-d38c47dcb7ba_wxs_gdc_realn.bam 38138877739 BAM harmonized CPTAC3 73164e58-3cba-4a7a-a6ab-a37395c5ebe4 7cdf5bb6c671a41c72232842ee56bd2d {"aliquot_tag": "ALQ_4ab8670", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04757.WXS.T C3L-04757 LUAD WXS tumor CPT0255050006 CPT0255050006.WholeExome.RP-1303.bam 22650638400 BAM submitted_aligned CPTAC3 423d6ca9-cea0-466f-be8e-94462867af69 3c4ed96ba8f8f594b817745962ab33ed {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04757.WXS.T.hg38 C3L-04757 LUAD WXS tumor CPT0255050006 21adbed6-c6b0-4b46-8a76-bdb0670be9ba_wxs_gdc_realn.bam 31766161952 BAM harmonized CPTAC3 f912f910-33c2-4d2c-9796-675563706221 88004c8836b9703e140cb7e4b8226873 {"aliquot_tag": "ALQ_d6a7ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.MethArray.Green.A C3L-04759 LUAD Methylation_Array tissue_normal CPT0249940007 203561450054_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 46a6201d-1465-4280-b31b-e5fcc4918849 3142edd6fe4c3be4283d7042f8f40769 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.MethArray.Green.T C3L-04759 LUAD Methylation_Array tumor CPT0249890007 203561620050_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9466bb30-a798-4774-9745-44b1b4448c6f 6487566d1b3f576709eb42ebf27aad14 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.MethArray.Red.A C3L-04759 LUAD Methylation_Array tissue_normal CPT0249940007 203561450054_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 32812dbc-e60e-4f1f-bb05-cb8325b5986b 38264eb49464df85a70c0e8705681191 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.MethArray.Red.T C3L-04759 LUAD Methylation_Array tumor CPT0249890007 203561620050_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 77959498-7786-4d4f-a220-c8fa3e61a982 dc74c25c152e9b337ffa0f4757a8d1d0 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.miRNA-Seq.A.hg38 C3L-04759 LUAD miRNA-Seq tissue_normal CPT0249940010 5dd48377-2a11-48eb-843b-6360f991312c_mirnaseq_gdc_realn.bam 218962378 BAM harmonized CPTAC3 7069b19e-0903-4fe1-bdcd-034e1291f2d5 71fd9675b3d13f24291a3e3df57fd004 {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.miRNA-Seq.S1_L006_R1.T C3L-04759 LUAD miRNA-Seq tumor CPT0249890010 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L006_R1_001.unaln.bam 260982952 BAM S1_L006_R1 submitted_unaligned CPTAC3 6fa305d2-5603-4641-982c-a6a15aca34f6 9d92ecc29090c5d39c69c374258a0c4f {"aliquot_tag": "ALQ_dfbbed3f", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.miRNA-Seq.S2_L006_R1.A C3L-04759 LUAD miRNA-Seq tissue_normal CPT0249940010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGAGC_S2_L006_R1_001.unaln.bam 191308132 BAM S2_L006_R1 submitted_unaligned CPTAC3 ce4e6d87-4ebb-4387-9c5f-f9cf20180cb3 a6e032f10e213fd1ffaf979ed2ec26a7 {"aliquot_tag": "ALQ_ec77fa2b", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.miRNA-Seq.T.hg38 C3L-04759 LUAD miRNA-Seq tumor CPT0249890010 9c0cb6e5-2e97-492c-b648-40a5bcc1891c_mirnaseq_gdc_realn.bam 290544593 BAM harmonized CPTAC3 3d39cf0c-7ca3-40a6-b09d-6e941accd06a 71fa174b170c50b2e571fe1e821d1ab8 {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.RNA-Seq.chimeric.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.chimeric.gdc_realn.bam 44252433 BAM chimeric harmonized CPTAC3 8ade85d0-d054-4f2c-9764-45a7ce5b9c57 fd81b6e7a7dac20e13683b41783180d1 {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.RNA-Seq.chimeric.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.chimeric.gdc_realn.bam 52313101 BAM chimeric harmonized CPTAC3 002148fa-76d0-4150-b627-e57d2e34ef87 d7c75da7dbc9f926de2124d08435e27d {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.RNA-Seq.genomic.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.genomic.gdc_realn.bam 7279958837 BAM genomic harmonized CPTAC3 22893fce-2287-4d5a-9fcd-71062bbeb3c5 8e29d9911288eb990eb6095ddfacd439 {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.RNA-Seq.genomic.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.genomic.gdc_realn.bam 9631928475 BAM genomic harmonized CPTAC3 1ce7b50d-3d52-41b1-ac03-e0309f979484 722ef47430c24d0218bbff1e525b0036 {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.RNA-Seq.S26_L007_R1.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R1_001.fastq.gz 4031740242 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 d2c086bc-623f-4a23-9cb3-80c53b597f24 da57886c47c7db44a92936ef14e62aaa {"aliquot_tag": "ALQ_dfbbed3f", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.RNA-Seq.S26_L007_R2.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R2_001.fastq.gz 4397666777 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 848e757d-af1a-4b7a-b260-3551cbf21d80 b2fd6b25dbb0595622197b087ae52b05 {"aliquot_tag": "ALQ_dfbbed3f", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.RNA-Seq.S27_L007_R1.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R1_001.fastq.gz 3013248187 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 e9fa0ea6-afa8-4429-8324-8804424c2b97 9a553ac7634aff96e709c69b1d233d7a {"aliquot_tag": "ALQ_ec77fa2b", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.RNA-Seq.S27_L007_R2.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R2_001.fastq.gz 3386143896 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 6beda164-3c9d-4cda-8f28-d235c978c091 51db0b399df6faa998e554f0aa19b6c5 {"aliquot_tag": "ALQ_ec77fa2b", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.RNA-Seq.transcriptome.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.transcriptome.gdc_realn.bam 6491168167 BAM transcriptome harmonized CPTAC3 a69328c8-ace0-432b-9f83-fc4fb3e61ea7 4f637052ec0816bac99c4bc629dfaf0b {"aliquot_tag": "ALQ_ec77fa2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.RNA-Seq.transcriptome.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.transcriptome.gdc_realn.bam 8784251544 BAM transcriptome harmonized CPTAC3 e3dca406-6564-4a8d-ac66-92a105a78cc4 c6945c6ffe21984794cd8ea23eeb2d0d {"aliquot_tag": "ALQ_dfbbed3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.WGS.N C3L-04759 LUAD WGS blood_normal CPT0250040002 CPT0250040002.WholeGenome.RP-1303.bam 75419038537 BAM submitted_aligned CPTAC3 e5fdb8ed-9aab-4c39-9b30-9be6a98b0506 1366bf92112d86611e2f8618edff8962 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04759.WGS.N.hg38 C3L-04759 LUAD WGS blood_normal CPT0250040002 f0520344-6377-4462-862f-581f5f45a641_wgs_gdc_realn.bam 109840848525 BAM harmonized CPTAC3 44924c91-e101-4a04-bb4a-1f386d8ad368 c39abe055e2a2e80d4d4c0290ac0e2a6 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04759.WGS.T C3L-04759 LUAD WGS tumor CPT0249890007 CPT0249890007.WholeGenome.RP-1303.bam 89079189823 BAM submitted_aligned CPTAC3 e6d0233c-6478-40a5-97eb-951a2bdebf4f 349fa2e194f00f39f66db913609d7453 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.WGS.T.hg38 C3L-04759 LUAD WGS tumor CPT0249890007 5fc49ef3-8cdd-493c-846d-23ce0178019a_wgs_gdc_realn.bam 130962694159 BAM harmonized CPTAC3 b257bc19-7dcf-456b-9392-9187805a8af0 bd075b394b06bfe20e72757bc70da201 {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.WXS.A C3L-04759 LUAD WXS tissue_normal CPT0249940007 CPT0249940007.WholeExome.RP-1303.bam 23720859346 BAM submitted_aligned CPTAC3 58934e3d-1e3f-49ff-8e9a-cce0dc5590e0 405ea5a958397a8c10cd6c31345ccdc2 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.WXS.A.hg38 C3L-04759 LUAD WXS tissue_normal CPT0249940007 9d526aac-fd28-49b2-a817-14bcadfbdbf0_wxs_gdc_realn.bam 32913262076 BAM harmonized CPTAC3 84e0d9dc-4d6a-45bf-a72f-15f83c762ab3 4dedd81d7c9dc29f61469acef9c07494 {"aliquot_tag": "ALQ_6b085ec9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04759.WXS.N C3L-04759 LUAD WXS blood_normal CPT0250040002 CPT0250040002.WholeExome.RP-1303.bam 21178495432 BAM submitted_aligned CPTAC3 ca028f3a-7bdb-4752-96c3-108bab1e710d ea1788faecd65e041e262e96aac35db9 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04759.WXS.N.hg38 C3L-04759 LUAD WXS blood_normal CPT0250040002 f0520344-6377-4462-862f-581f5f45a641_wxs_gdc_realn.bam 29292053601 BAM harmonized CPTAC3 857d5e77-fb80-45a8-86d5-b2e15ae3f8ea 0c29660a14f4d294b3170e7c7afae819 {"aliquot_tag": "ALQ_655fbec3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04759.WXS.T C3L-04759 LUAD WXS tumor CPT0249890007 CPT0249890007.WholeExome.RP-1303.bam 20176087719 BAM submitted_aligned CPTAC3 a67b06cd-8264-49c9-acd8-5d4fa1155a1e 12fd125f9f8a54149bdda494bc0ca25b {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04759.WXS.T.hg38 C3L-04759 LUAD WXS tumor CPT0249890007 5fc49ef3-8cdd-493c-846d-23ce0178019a_wxs_gdc_realn.bam 27838659612 BAM harmonized CPTAC3 db2c016d-d894-4b43-b668-6408130899cc bacf325f26359865cfd5c9333ec2020a {"aliquot_tag": "ALQ_58c449dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04761.MethArray.Green.Tbm C3L-04761 AML Methylation_Array tumor_bone_marrow CPT0302830002 205555390128_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 02daaf58-e637-4e91-b425-8da11e47b09c a259b1d2c6e804cc8e3cfa5243ed6396 {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.MethArray.Red.Tbm C3L-04761 AML Methylation_Array tumor_bone_marrow CPT0302830002 205555390128_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 1c32839b-7ade-4084-ab77-3306012f70cd 00b972952c3032fd218167967fa3dcaf {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.miRNA-Seq.S40_L008_R1.Tbm C3L-04761 AML miRNA-Seq tumor_bone_marrow CPT0302840002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACCGG_S40_L008_R1_001.unaln.bam 276727312 BAM S40_L008_R1 submitted_unaligned CPTAC3 deb54249-aec2-4590-a4ca-cbef26368ccb 20a897b8b4f259dcbb2296688153b4c8 {"aliquot_tag": "ALQ_410837a0", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-04761.miRNA-Seq.Tbm.hg38 C3L-04761 AML miRNA-Seq tumor_bone_marrow CPT0302840002 7918e895-5222-4075-97e4-1f958c46215f_mirnaseq_gdc_realn.bam 300180783 BAM harmonized CPTAC3 74981bb8-840d-48fd-96e5-5508f156cdd5 82a5f1709a2b5910f48f62da427954a7 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-04761.RNA-Seq.chimeric.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.chimeric.gdc_realn.bam 162879915 BAM chimeric harmonized CPTAC3 203cff96-0499-45f6-bbcd-290c266d5573 ba44035899af3ca56b31f30dc35c29f8 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.RNA-Seq.genomic.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.genomic.gdc_realn.bam 7585660971 BAM genomic harmonized CPTAC3 111f4051-83dc-4226-a909-2a29c7f205ce b83e44920fb1a8eb5f38c89ea39ef649 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.RNA-Seq.S2_L001_R1.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R1_001.fastq.gz 3682020335 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 f15b85cd-4f59-420d-b186-8cc631e57b4b 6da78c1e4c5a07ac100a59181b6ae2e8 {"aliquot_tag": "ALQ_410837a0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-04761.RNA-Seq.S2_L001_R2.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R2_001.fastq.gz 4158910002 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 2986dc61-29bb-4478-9a20-d37b350606cd 36646a731ed3ab23d3aa6ec1cac0ab9f {"aliquot_tag": "ALQ_410837a0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-04761.RNA-Seq.transcriptome.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.transcriptome.gdc_realn.bam 9359104723 BAM transcriptome harmonized CPTAC3 d93a783d-6abe-4d8e-bd45-5b3eb51f9ddf 50208d56c9fc0f87f3282f2a37404f79 {"aliquot_tag": "ALQ_410837a0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.WGS.Nbc C3L-04761 AML WGS buccal_normal CPT0302950003 CPT0302950003.WholeGenome.RP-2158.bam 55420012058 BAM submitted_aligned CPTAC3 452eb9dc-89fd-401f-a389-3ea2a782a488 364b0b5db7839af191ddc00d565026c1 {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04761.WGS.Nbc.hg38 C3L-04761 AML WGS buccal_normal CPT0302950003 4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wgs_gdc_realn.bam 166004693494 BAM harmonized CPTAC3 7b5193f4-61e1-40fd-97f0-eccf74fa790c ce8a586ff53802b17e304d4252a7d20b {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04761.WGS.Tbm C3L-04761 AML WGS tumor_bone_marrow CPT0302830002 CPT0302830002.WholeGenome.RP-2158.bam 48791746622 BAM submitted_aligned CPTAC3 0856e8b1-df94-4a06-a626-5000dc337cd5 7cd92d159ddeeb9162f19ce59361230f {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.WGS.Tbm.hg38 C3L-04761 AML WGS tumor_bone_marrow CPT0302830002 7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wgs_gdc_realn.bam 140037712642 BAM harmonized CPTAC3 3d065aa6-d8f3-42d3-b435-63d257e95504 89d53348addc1819079af2d0bf14c95c {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.WXS.Nbc C3L-04761 AML WXS buccal_normal CPT0302950003 CPT0302950003.WholeExome.RP-1303.bam 15987418999 BAM submitted_aligned CPTAC3 1821e3aa-e16a-4a89-bda7-089cda0957b7 07debb4adbe200e9f7dc84d77217157c {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04761.WXS.Nbc.hg38 C3L-04761 AML WXS buccal_normal CPT0302950003 4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wxs_gdc_realn.bam 22169092016 BAM harmonized CPTAC3 a5e9a55d-077a-474e-9e46-634e8a9e1090 dae268c19e8036d88c7085048b25d4db {"aliquot_tag": "ALQ_c033fd23", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04761.WXS.Tbm C3L-04761 AML WXS tumor_bone_marrow CPT0302830002 CPT0302830002.WholeExome.RP-1303.bam 22552836245 BAM submitted_aligned CPTAC3 1ff262f2-213a-45b5-88cc-8931650733d1 96daf50bd81a775f41a148cec2eddba6 {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04761.WXS.Tbm.hg38 C3L-04761 AML WXS tumor_bone_marrow CPT0302830002 7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wxs_gdc_realn.bam 31278135701 BAM harmonized CPTAC3 b47e314b-a40f-4a49-95b7-ae1bf7674558 192c5c3c27f5db44526ad0ee2d048b43 {"aliquot_tag": "ALQ_f328ebb0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04763.MethArray.Green.Tbm C3L-04763 AML Methylation_Array tumor_bone_marrow CPT0303110002 205555380136_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6b196c75-c182-4b3e-9d84-642753a2dd72 333e14584bbbe66d9bd61ab3a6e80e37 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.MethArray.Red.Tbm C3L-04763 AML Methylation_Array tumor_bone_marrow CPT0303110002 205555380136_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 e5516d6b-f3ad-4e9f-a4d2-2affc37ba969 a8583f177d584dbe3286decccce2ebd0 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.miRNA-Seq.S42_L008_R1.Tbm C3L-04763 AML miRNA-Seq tumor_bone_marrow CPT0303120002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACTCA_S42_L008_R1_001.unaln.bam 138877284 BAM S42_L008_R1 submitted_unaligned CPTAC3 d9cdec1d-8e02-453c-a957-cfe4b47c9819 5d3c2c8038d89e390c70b2eca012f09d {"aliquot_tag": "ALQ_4f30987c", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.miRNA-Seq.Tbm.hg38 C3L-04763 AML miRNA-Seq tumor_bone_marrow CPT0303120002 01807494-68bb-4dd9-850c-f6d219938a50_mirnaseq_gdc_realn.bam 150347625 BAM harmonized CPTAC3 f393c9d0-e04e-4b18-a030-74d39edfe739 381c00d8e00a5999b3d493ea3e3de21d {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.RNA-Seq.chimeric.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.chimeric.gdc_realn.bam 205297609 BAM chimeric harmonized CPTAC3 cf466dea-fca0-4326-9c48-5d6a07c88027 b34be18ec55c289fc1e6697de22f07af {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.RNA-Seq.genomic.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.genomic.gdc_realn.bam 7265645962 BAM genomic harmonized CPTAC3 42b3ad09-8999-4847-9167-00c832aa5f70 54b9674d166ec4425634d6cd4b368d07 {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.RNA-Seq.S3_L001_R1.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 3438040411 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 c3a9b183-700e-4ae3-adc2-0ffade837bf0 786e852b7841d806480bc2000671308d {"aliquot_tag": "ALQ_4f30987c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.RNA-Seq.S3_L001_R2.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 3810935126 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 ab31f876-7f37-41c3-960e-43702282f5be cc9a6cf3dd2b0625e8a214ba8a1d8eef {"aliquot_tag": "ALQ_4f30987c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.RNA-Seq.transcriptome.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.transcriptome.gdc_realn.bam 6968798058 BAM transcriptome harmonized CPTAC3 b39b158f-f301-4222-8854-3bbe03a945ee 356b03577ab48ccfc8274367a43ed563 {"aliquot_tag": "ALQ_4f30987c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.WGS.Nbc C3L-04763 AML WGS buccal_normal CPT0303300001 CPT0303300001.WholeGenome.RP-2158.bam 50446856202 BAM submitted_aligned CPTAC3 f2517931-f731-45d6-9c36-78f975b2e353 0649a2ec90c3e9ce929740d615625a2b {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04763.WGS.Nbc.hg38 C3L-04763 AML WGS buccal_normal CPT0303300001 326fbc29-721b-40cb-b508-a0256dc1cd08_wgs_gdc_realn.bam 156462698691 BAM harmonized CPTAC3 14184470-cfa5-412b-8fd5-87bc5d88068f e0a3ecb224dbe434040753e831192df6 {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04763.WGS.Tbm C3L-04763 AML WGS tumor_bone_marrow CPT0303110002 CPT0303110002.WholeGenome.RP-2158.bam 46925630457 BAM submitted_aligned CPTAC3 a35c2354-aa04-4d12-9564-27a55990b864 b721e82a92ffa854a2162903efcb76ad {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.WGS.Tbm.hg38 C3L-04763 AML WGS tumor_bone_marrow CPT0303110002 cc6720e2-8526-42f4-b384-e5e63f62aae5_wgs_gdc_realn.bam 141648633992 BAM harmonized CPTAC3 5b2dc5b0-dc90-4b22-8713-041c60b5ca3f 83d5b515ea6ec7158f294494adb81b13 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.WXS.Nbc C3L-04763 AML WXS buccal_normal CPT0303300001 CPT0303300001.WholeExome.RP-1303.bam 29577172174 BAM submitted_aligned CPTAC3 d0fd167a-07b4-4da0-bd06-60fe92fbc5c1 eef642e962a3d6eaa7dc792f6d30da8b {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04763.WXS.Nbc.hg38 C3L-04763 AML WXS buccal_normal CPT0303300001 326fbc29-721b-40cb-b508-a0256dc1cd08_wxs_gdc_realn.bam 39394401609 BAM harmonized CPTAC3 ba2e573c-d870-40df-9413-ab7dd13caa74 c56950156e70b85a74de615cb82b649b {"aliquot_tag": "ALQ_e1313bad", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04763.WXS.Tbm C3L-04763 AML WXS tumor_bone_marrow CPT0303110002 CPT0303110002.WholeExome.RP-1303.bam 23630053840 BAM submitted_aligned CPTAC3 feb43a47-9e63-4fee-97d6-012a7853f0c3 795dc07d5b29864fb6ef31c6a37942ba {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04763.WXS.Tbm.hg38 C3L-04763 AML WXS tumor_bone_marrow CPT0303110002 cc6720e2-8526-42f4-b384-e5e63f62aae5_wxs_gdc_realn.bam 32626803814 BAM harmonized CPTAC3 a341645d-479f-43f0-b895-33ae1051a6fd b76b7069e5cf5def39480a3ad0e2d600 {"aliquot_tag": "ALQ_890e2ac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04764.MethArray.Green.Tbm C3L-04764 AML Methylation_Array tumor_bone_marrow CPT0260550002 203273630258_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c1b1a611-651b-4fbc-919a-7ac124c9a255 6fe5357de35f785e3c38529209748ad5 {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.MethArray.Red.Tbm C3L-04764 AML Methylation_Array tumor_bone_marrow CPT0260550002 203273630258_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d1a9af49-f7ed-454b-a83c-ea01e1fa589a 47ff0a40db8f2b5140a39158b93d5ac8 {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.miRNA-Seq.S26_L002_R1.Tbm C3L-04764 AML miRNA-Seq tumor_bone_marrow CPT0260570002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGAGC_S26_L002_R1_001.unaln.bam 178127670 BAM S26_L002_R1 submitted_unaligned CPTAC3 51dbd00a-d9d5-48c2-a741-1a0a7f463d6a 898801144ba882eff845eac5d58a7d2c {"aliquot_tag": "ALQ_fcbd5243", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.miRNA-Seq.Tbm.hg38 C3L-04764 AML miRNA-Seq tumor_bone_marrow CPT0260570002 3983a953-59bd-4813-9a2c-aa067430def9_mirnaseq_gdc_realn.bam 191415974 BAM harmonized CPTAC3 a18bf2f5-5d19-4b0c-90cf-90a7e53c66a4 dc8236479d12d10691e81a7c912e9be3 {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.RNA-Seq.chimeric.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.chimeric.gdc_realn.bam 38677727 BAM chimeric harmonized CPTAC3 08077f96-7e9a-4fbe-98ce-5cc3e676a600 0f359b392ee3478cb69a8a8aff7c12bd {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.RNA-Seq.genomic.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.genomic.gdc_realn.bam 8906663385 BAM genomic harmonized CPTAC3 0b7b6ba6-cd08-4c35-89d6-4163aa37dc44 3923435fb3fcee45a22694e1be3de0a6 {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.RNA-Seq.S20_L006_R1.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R1_001.fastq.gz 4139086776 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 370f0a2e-f908-4c28-9686-1f126fd58771 43a4e8a4a6ed0f1e7b986b434ee915c4 {"aliquot_tag": "ALQ_fcbd5243", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.RNA-Seq.S20_L006_R2.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R2_001.fastq.gz 4823140430 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 d253f323-45f9-4ceb-95d3-ac7d264bc1f8 1a88bd75157897cbee19cbbc1d3278ae {"aliquot_tag": "ALQ_fcbd5243", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.RNA-Seq.transcriptome.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.transcriptome.gdc_realn.bam 9981907929 BAM transcriptome harmonized CPTAC3 5a2ab5fb-630d-4876-9433-925d7e1f3308 554d3e667f0fdf4fecd53015d92696fa {"aliquot_tag": "ALQ_fcbd5243", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.WGS.Tbm C3L-04764 AML WGS tumor_bone_marrow CPT0260550002 CPT0260550002.WholeGenome.RP-1303.bam 63676234713 BAM submitted_aligned CPTAC3 1a4524b1-eba1-4d66-a4b1-aea83eeb6aed f692db7fafc32a518e85ef7642ddf97c {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.WGS.Tbm.hg38 C3L-04764 AML WGS tumor_bone_marrow CPT0260550002 0b9c762a-bb10-4cba-9fb0-d88c404bd01f_wgs_gdc_realn.bam 91925049877 BAM harmonized CPTAC3 410d616d-0780-4fac-9b2e-d3da697f3e9f e0911074e22bdf5fe165b0ccfd7205da {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.WXS.Nbc C3L-04764 AML WXS buccal_normal CPT0260540003 CPT0260540003.WholeExome.RP-1303.bam 26076194544 BAM submitted_aligned CPTAC3 d5febe10-212b-44cc-98cd-abbf3be0ecd6 2689fd924e08cc9fc2288211458f12e1 {"aliquot_tag": "ALQ_cc1a1805", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04764.WXS.Nbc.hg38 C3L-04764 AML WXS buccal_normal CPT0260540003 373fe40e-c19b-4f32-8e26-6ad7440cc5bb_wxs_gdc_realn.bam 36843363191 BAM harmonized CPTAC3 76c541bd-e0d0-4820-b4c8-f74fc46dd369 bfa98cb7cef735b1f6d1bcafd394f7ad {"aliquot_tag": "ALQ_cc1a1805", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04764.WXS.Tbm C3L-04764 AML WXS tumor_bone_marrow CPT0260550002 CPT0260550002.WholeExome.RP-1303.bam 23881522848 BAM submitted_aligned CPTAC3 283a4db1-e536-448a-87b7-a7f4e6de3c03 6e34b96e226e3f04565af308b6bb770a {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04764.WXS.Tbm.hg38 C3L-04764 AML WXS tumor_bone_marrow CPT0260550002 0b9c762a-bb10-4cba-9fb0-d88c404bd01f_wxs_gdc_realn.bam 33317481378 BAM harmonized CPTAC3 9144f1a0-97cf-41ef-ac03-971f5226082f 96e28972ff2af44063624d6857473cc8 {"aliquot_tag": "ALQ_867d0123", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.MethArray.Green.Tbm C3L-04766 AML Methylation_Array tumor_bone_marrow CPT0260660002 203561620159_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2a703a04-5296-4a43-8b6d-32c8730e380b 5153fa326fbc8501b9aa519fd8082cf0 {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.MethArray.Red.Tbm C3L-04766 AML Methylation_Array tumor_bone_marrow CPT0260660002 203561620159_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 58c0798e-267f-4323-971d-d945197d5e92 3b89c68ccd010d8643b00e6c8eea78bb {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.miRNA-Seq.S2_L003_R1.Tbm C3L-04766 AML miRNA-Seq tumor_bone_marrow CPT0260670002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGATGT_S2_L003_R1_001.unaln.bam 173028735 BAM S2_L003_R1 submitted_unaligned CPTAC3 7dc82f1b-d118-4e31-8dba-38f216c35307 b951847483fee06bf82bf1358080a8f2 {"aliquot_tag": "ALQ_7a2920ed", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.miRNA-Seq.Tbm.hg38 C3L-04766 AML miRNA-Seq tumor_bone_marrow CPT0260670002 a643812b-86a0-4ba9-854f-cbda9e79c95d_mirnaseq_gdc_realn.bam 190923456 BAM harmonized CPTAC3 6ea990cc-4585-4985-9c6e-8b0adcff8ee4 046d93cef9fb8708464438660785839b {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.RNA-Seq.chimeric.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.chimeric.gdc_realn.bam 37089263 BAM chimeric harmonized CPTAC3 b61458c2-0a4a-4fd9-a4a2-927c3da559fd 6d9145819b1789b25b73274fce0edf39 {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.RNA-Seq.genomic.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.genomic.gdc_realn.bam 7948679179 BAM genomic harmonized CPTAC3 fecb3f77-497c-459d-9b8a-080fc358e538 e6186f6528817a4b42aac09fc85dddaa {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.RNA-Seq.S6_L002_R1.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R1_001.fastq.gz 3668817528 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 e837050d-a525-4a5e-be38-9adaf277624c 63124561b78e3fd1f25e6af43f599682 {"aliquot_tag": "ALQ_7a2920ed", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.RNA-Seq.S6_L002_R2.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R2_001.fastq.gz 4178937187 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 38f58c9e-8d1b-4221-9c7d-80b4c1721651 e0374d2ad7802b79e067feb74da52de2 {"aliquot_tag": "ALQ_7a2920ed", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.RNA-Seq.transcriptome.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.transcriptome.gdc_realn.bam 7239737987 BAM transcriptome harmonized CPTAC3 875847c5-d6af-45f4-8d22-39fce2480e87 0f5435ce0d685e1f5170f723a331967a {"aliquot_tag": "ALQ_7a2920ed", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.WGS.Nbc C3L-04766 AML WGS buccal_normal CPT0260650002 CPT0260650002.WholeGenome.RP-1303.bam 67925942595 BAM submitted_aligned CPTAC3 b92b8b7a-87f9-4b13-9e55-f97aa43b0a06 a1ffde81c9aac3a09fa07f4757513789 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04766.WGS.Nbc.hg38 C3L-04766 AML WGS buccal_normal CPT0260650002 7522fb52-aa98-4b9c-a501-ead834f04edc_wgs_gdc_realn.bam 104402562872 BAM harmonized CPTAC3 86308fbb-f98a-4d01-92c0-dcc81d98f203 85f57fcc491540de13b149a21e14a5a4 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04766.WGS.Tbm C3L-04766 AML WGS tumor_bone_marrow CPT0260660002 CPT0260660002.WholeGenome.RP-1303.bam 58241138278 BAM submitted_aligned CPTAC3 2dbfd9c7-0b99-4709-a901-576b0ee0b46c 4d65cbe5f529a87bc1f4d4f6e026e1ed {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.WGS.Tbm.hg38 C3L-04766 AML WGS tumor_bone_marrow CPT0260660002 a5bb1f68-34a2-4e89-93e2-894767d36772_wgs_gdc_realn.bam 84265014757 BAM harmonized CPTAC3 d2f6501a-b963-45d6-a9a2-671b09642337 f9b944856b661783259cfccf3a3bd59b {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.WXS.Nbc C3L-04766 AML WXS buccal_normal CPT0260650002 CPT0260650002.WholeExome.RP-1303.bam 28034227317 BAM submitted_aligned CPTAC3 b8f4dbbf-eea7-4c3a-9416-9ccadb6d3dfd 5c7b35aea83eba9f410315801903a2a1 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04766.WXS.Nbc.hg38 C3L-04766 AML WXS buccal_normal CPT0260650002 7522fb52-aa98-4b9c-a501-ead834f04edc_wxs_gdc_realn.bam 39284780153 BAM harmonized CPTAC3 c126f3de-a3ce-4001-951e-2474f086a1b6 53b504d7511dc934b101e7f2ea70e909 {"aliquot_tag": "ALQ_e9738d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04766.WXS.Tbm C3L-04766 AML WXS tumor_bone_marrow CPT0260660002 CPT0260660002.WholeExome.RP-1303.bam 23571318929 BAM submitted_aligned CPTAC3 b7632efe-0a19-423c-8f59-78cb4d67b671 5ff077ec65064041554f07b21eef8063 {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04766.WXS.Tbm.hg38 C3L-04766 AML WXS tumor_bone_marrow CPT0260660002 a5bb1f68-34a2-4e89-93e2-894767d36772_wxs_gdc_realn.bam 32762262475 BAM harmonized CPTAC3 ac77c05a-238c-4406-bef4-04d31792f409 9c777c09d6c39d8d2465b1e83774a7b7 {"aliquot_tag": "ALQ_4749095d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.MethArray.Green.Tbm C3L-04767 AML Methylation_Array tumor_bone_marrow CPT0260760002 203273630048_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 34ab452c-97ec-42e6-b986-e547242f60a9 3700db77dfebde6d5590b354c19d0b04 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.MethArray.Red.Tbm C3L-04767 AML Methylation_Array tumor_bone_marrow CPT0260760002 203273630048_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d3b7f4a2-2cac-4b53-b11c-6f768812287f 7ef690761f2eb2134d1ec25a872f7fbb {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.miRNA-Seq.S3_L003_R1.Tbm C3L-04767 AML miRNA-Seq tumor_bone_marrow CPT0260770002 190508_UNC31-K00269_0215_BH7FYKBBXY_TTAGGC_S3_L003_R1_001.unaln.bam 246884358 BAM S3_L003_R1 submitted_unaligned CPTAC3 444c5c4b-7482-409c-92d5-931a4dc5d201 110f214597c6e02267618fd2e56675e4 {"aliquot_tag": "ALQ_b175f348", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.miRNA-Seq.Tbm.hg38 C3L-04767 AML miRNA-Seq tumor_bone_marrow CPT0260770002 ef87942c-3c82-4825-9b65-9da44fba501b_mirnaseq_gdc_realn.bam 282682418 BAM harmonized CPTAC3 0d563733-1785-4f82-b37a-a429a262b212 4a0144f2538ff7edcc7dc07740658c67 {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.RNA-Seq.chimeric.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.chimeric.gdc_realn.bam 42692397 BAM chimeric harmonized CPTAC3 ad17399d-9f9d-475c-b4b4-dd38b2543a50 953fd60e4f2e7a1b695ba3a2d85947f5 {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.RNA-Seq.genomic.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.genomic.gdc_realn.bam 8519618467 BAM genomic harmonized CPTAC3 98857b7e-d2e6-40b0-bb7a-ffc14c58fbea e8dbc9d90350c7eb52133f6f30868eca {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.RNA-Seq.S8_L002_R1.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R1_001.fastq.gz 4188033393 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 92bee0be-2e91-47aa-9229-fced2412844b 9053cb50676d32bd29c6dd0448f6e6df {"aliquot_tag": "ALQ_b175f348", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.RNA-Seq.S8_L002_R2.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R2_001.fastq.gz 4694329276 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 5016063a-f737-41ec-b266-428eb7eb6c95 efecfed8614eee85e4f033d0e0a67430 {"aliquot_tag": "ALQ_b175f348", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.RNA-Seq.transcriptome.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.transcriptome.gdc_realn.bam 7831070410 BAM transcriptome harmonized CPTAC3 665615ba-246c-428b-a2a1-7ff891a1a4a0 eb1065d6e09fbfa4e7ac425f2b10ffc9 {"aliquot_tag": "ALQ_b175f348", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.WGS.Tbm C3L-04767 AML WGS tumor_bone_marrow CPT0260760002 CPT0260760002.WholeGenome.RP-1303.bam 61097518367 BAM submitted_aligned CPTAC3 6fd28ed6-a485-4b64-8ecb-2ae3b08a3c1e 19e493006a5dcc2826c1d7cdfff98718 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.WGS.Tbm.hg38 C3L-04767 AML WGS tumor_bone_marrow CPT0260760002 0eb42c6e-f668-482b-8dc5-8390fd97a45f_wgs_gdc_realn.bam 90069015958 BAM harmonized CPTAC3 b8e7bafc-db87-4aef-a154-d5a065dcc994 32c49540a7ba8ca4f62114fba4e428b6 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.WXS.Nbc C3L-04767 AML WXS buccal_normal CPT0260750003 CPT0260750003.WholeExome.RP-1303.bam 18042532462 BAM submitted_aligned CPTAC3 db49fd10-7092-4a5d-896f-e4504d263fa8 fd70b9a5e6521b71702bcb955eaca89c {"aliquot_tag": "ALQ_bcb290be", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04767.WXS.Nbc.hg38 C3L-04767 AML WXS buccal_normal CPT0260750003 04e7fee7-5f04-403f-b49a-64706b326083_wxs_gdc_realn.bam 24768827151 BAM harmonized CPTAC3 2380ca7e-3224-488c-b0e0-baebea395923 93a52dfaa5811d146f2e34632b7e62cf {"aliquot_tag": "ALQ_bcb290be", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04767.WXS.Tbm C3L-04767 AML WXS tumor_bone_marrow CPT0260760002 CPT0260760002.WholeExome.RP-1303.bam 21127839469 BAM submitted_aligned CPTAC3 400eb839-d22f-4150-adeb-95753cf78830 b89fa2e2b46f3a994ad02b7632d59030 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04767.WXS.Tbm.hg38 C3L-04767 AML WXS tumor_bone_marrow CPT0260760002 0eb42c6e-f668-482b-8dc5-8390fd97a45f_wxs_gdc_realn.bam 28599266617 BAM harmonized CPTAC3 a24305f0-d979-4cf3-ba16-3c31dd7a20fc ec86ec5ee4f0b76846b01797f88147e8 {"aliquot_tag": "ALQ_8c15daf8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-04786.MethArray.Green.A C3L-04786 LSCC Methylation_Array tissue_normal CPT0279230006 204372030014_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 942d123b-72e8-43ae-b974-adcb7fe94c42 3267519953cc142dc044047c3d091b64 {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.MethArray.Green.T C3L-04786 LSCC Methylation_Array tumor CPT0279210009 204372030074_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4201410a-7f39-413e-8ccb-089b7ac0f759 0e0dd2af5aec652189d05e8048f605fb {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.MethArray.Red.A C3L-04786 LSCC Methylation_Array tissue_normal CPT0279230006 204372030014_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 07ec162d-221e-4002-b74a-0d3956e486f6 1fbd4ac949492b9d63d3fdec39abef6a {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.MethArray.Red.T C3L-04786 LSCC Methylation_Array tumor CPT0279210009 204372030074_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 aca1eced-0072-402b-8cc4-1cf1f2ff0c07 9a87924c2f55808e768f83fe27eeec8d {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.miRNA-Seq.A.hg38 C3L-04786 LSCC miRNA-Seq tissue_normal CPT0279230009 82151494-6c74-4cf5-a5a4-e3f63aa26ade_mirnaseq_gdc_realn.bam 239860815 BAM harmonized CPTAC3 14f752b3-6fed-4a9a-bf31-17c1db27b946 306d95260198555c91946a8cd86bfb04 {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.miRNA-Seq.S5_L006_R1.T C3L-04786 LSCC miRNA-Seq tumor CPT0279210006 200224_UNC31-K00269_0267_AHC722BBXY_ACAGTG_S5_L006_R1_001.unaln.bam 220604822 BAM S5_L006_R1 submitted_unaligned CPTAC3 4ffb68ad-9423-4c16-bba5-57835f450f4c 606cd844ddbdb598eeb1279313f14c9f {"aliquot_tag": "ALQ_30a7160f", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.miRNA-Seq.S8_L005_R1.A C3L-04786 LSCC miRNA-Seq tissue_normal CPT0279230009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCGTCC_S8_L005_R1_001.unaln.bam 218944913 BAM S8_L005_R1 submitted_unaligned CPTAC3 d98ab33c-9ebe-439e-8917-3c24be963558 2a3eb449ad0dd7f1003033516ef06c4d {"aliquot_tag": "ALQ_dad858fe", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.miRNA-Seq.T.hg38 C3L-04786 LSCC miRNA-Seq tumor CPT0279210006 4dd0d1b1-8b7d-4fc2-babd-f0f5bef45acb_mirnaseq_gdc_realn.bam 239848891 BAM harmonized CPTAC3 11669fc5-9f8b-4509-968a-91499610e459 91369f0d04b12db11c1c4e839d0b5ba2 {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.RNA-Seq.chimeric.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.chimeric.gdc_realn.bam 31515844 BAM chimeric harmonized CPTAC3 fe5e41e5-fb3d-482f-96a7-9f82c5778972 7b97bf184d0aaa999554d8b4456c6b9e {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.RNA-Seq.chimeric.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.chimeric.gdc_realn.bam 36523483 BAM chimeric harmonized CPTAC3 1c3cc54d-2a09-4bfe-999f-a64ef3b589c9 0facda299ebe975076c4a6be79b857d8 {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.RNA-Seq.genomic.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.genomic.gdc_realn.bam 8507591196 BAM genomic harmonized CPTAC3 9fd4aa01-0131-4446-9f5c-6b7abd4f4425 51d6e0795c1019e7ffb9671fbecd7014 {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.RNA-Seq.genomic.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.genomic.gdc_realn.bam 7078896591 BAM genomic harmonized CPTAC3 b9738a00-d11a-4548-93a0-1d28aa877edb c47480aae0b2576b137a3fa57a1603ae {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.RNA-Seq.S16_L008_R1.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R1_001.fastq.gz 4036325353 FASTQ S16_L008_R1 submitted_unaligned CPTAC3 cfc89afe-5f55-471c-8103-5252a5b696d1 0b6075d2b94704c081d6ea364a287895 {"aliquot_tag": "ALQ_dad858fe", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.RNA-Seq.S16_L008_R2.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R2_001.fastq.gz 4641465944 FASTQ S16_L008_R2 submitted_unaligned CPTAC3 a0b1ffc3-b500-4406-878d-aed70e0fe282 59c79332917d3eff2985aa0b2ef2a25c {"aliquot_tag": "ALQ_dad858fe", "sample": "S16", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.RNA-Seq.S21_L006_R1.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R1_001.fastq.gz 3479865010 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 9ade8c4c-e0cb-4b9d-94e3-9221a03c8db9 6a3d6460676e09a8104454cd9707c1d2 {"aliquot_tag": "ALQ_30a7160f", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.RNA-Seq.S21_L006_R2.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R2_001.fastq.gz 3690346414 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 c35d2ca2-c670-4e53-abbc-ac7af4607258 9bc3f15b4d6d7d5ee85f575b4027fbac {"aliquot_tag": "ALQ_30a7160f", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.RNA-Seq.transcriptome.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.transcriptome.gdc_realn.bam 10703361921 BAM transcriptome harmonized CPTAC3 93afec32-a1a7-4691-9c16-1b3078a975b7 6412b25533b73a224f3e30586aee1fa9 {"aliquot_tag": "ALQ_dad858fe", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.RNA-Seq.transcriptome.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.transcriptome.gdc_realn.bam 9528929454 BAM transcriptome harmonized CPTAC3 eaaa2a9d-7aba-4e0c-8056-be39813f0610 193a2955b18694a267cd2d5c2be9377c {"aliquot_tag": "ALQ_30a7160f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.WGS.N C3L-04786 LSCC WGS blood_normal CPT0279350002 CPT0279350002.WholeGenome.RP-2158.bam 23865826101 BAM submitted_aligned CPTAC3 54e4018b-b8d0-4519-ae9c-1939ee18b691 2dc447415a286c4645efac6de490013d {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04786.WGS.N.hg38 C3L-04786 LSCC WGS blood_normal CPT0279350002 d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wgs_gdc_realn.bam 68224029568 BAM harmonized CPTAC3 75496f29-8401-4131-b320-d16cced4737b 4dd71dcf688e4d95cf1900152c54c063 {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04786.WGS.T C3L-04786 LSCC WGS tumor CPT0279210009 CPT0279210009.WholeGenome.RP-2158.bam 25897885118 BAM submitted_aligned CPTAC3 060f78df-6fe1-4633-89a2-4a97d53c48c1 2d19430da77d229a99dfcea81babd553 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.WGS.T.hg38 C3L-04786 LSCC WGS tumor CPT0279210009 3feebd7d-0450-44eb-9c19-f112017bcf12_wgs_gdc_realn.bam 77604190824 BAM harmonized CPTAC3 6c11187b-9320-49ed-838d-692f239d9451 4e32f0d821faa7526e0389b63b42a777 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.WXS.A C3L-04786 LSCC WXS tissue_normal CPT0279230006 CPT0279230006.WholeExome.RP-1303.bam 28397456283 BAM submitted_aligned CPTAC3 2dbe4211-9f6e-45ec-9e29-089e98f6d627 a1dbf07ed018eaac782742edddbd2598 {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.WXS.A.hg38 C3L-04786 LSCC WXS tissue_normal CPT0279230006 5ec5adef-48bb-45e4-9a94-58ac5594c47f_wxs_gdc_realn.bam 38660851671 BAM harmonized CPTAC3 94f5f1e8-b338-4b3a-b2f3-dca99f15c105 9c96cd4cec8dd11268b45e46ea19e97a {"aliquot_tag": "ALQ_4a67456f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04786.WXS.N C3L-04786 LSCC WXS blood_normal CPT0279350002 CPT0279350002.WholeExome.RP-1303.bam 22100950025 BAM submitted_aligned CPTAC3 ea4f14d6-73e9-4f16-816e-787f9b50ee09 3ade6b6ce3b6a6c3d64c853fb5c8ce6a {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04786.WXS.N.hg38 C3L-04786 LSCC WXS blood_normal CPT0279350002 d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wxs_gdc_realn.bam 29932093972 BAM harmonized CPTAC3 487e9694-73fd-4a5f-ab4d-1d2171cd4757 d35f7ee4ceffe6b031125c217a97efe9 {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04786.WXS.T C3L-04786 LSCC WXS tumor CPT0279210009 CPT0279210009.WholeExome.RP-1303.bam 19018558188 BAM submitted_aligned CPTAC3 0bcc5c8f-1ac0-498c-af74-487a33625516 b3d82b85f96f75bfd4ab5daf730c4c69 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04786.WXS.T.hg38 C3L-04786 LSCC WXS tumor CPT0279210009 3feebd7d-0450-44eb-9c19-f112017bcf12_wxs_gdc_realn.bam 26094775383 BAM harmonized CPTAC3 15f12617-0664-4865-884b-d0b00331f2a2 a4cb29558e161746cfc47358c0fc7e98 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04791.MethArray.Green.T C3L-04791 HNSCC Methylation_Array tumor CPT0250310006 203271740101_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 9ae6de86-f22b-4b83-af92-fd0ee8b91caf 911410b087e9f2847a9773869b61d22b {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.MethArray.Red.T C3L-04791 HNSCC Methylation_Array tumor CPT0250310006 203271740101_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 f1b5d905-8020-415b-aa6f-3641a035ad6b 2f2e7d205b28d45616259d958daa0d10 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.miRNA-Seq.A.hg38 C3L-04791 HNSCC miRNA-Seq tissue_normal CPT0250330006 b4f3e67a-2b62-4bc7-a7f8-57572bba55c0_mirnaseq_gdc_realn.bam 417687994 BAM harmonized CPTAC3 6e9679ef-40ae-4b96-935e-a619dc91fb90 19f01ec5c69916cd0cadd0560349d488 {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04791.miRNA-Seq.S39_L006_R1.A C3L-04791 HNSCC miRNA-Seq tissue_normal CPT0250330006 190228_UNC32-K00270_0151_AHYLY3BBXX_CTATAC_S39_L006_R1_001.unaln.bam 372285136 BAM S39_L006_R1 submitted_unaligned CPTAC3 017346a9-e434-4781-89a3-72b6616185c3 03da83e66945c6a202fabe6345fe2ea6 {"aliquot_tag": "ALQ_5686d464", "sample": "S39", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04791.miRNA-Seq.S42_L004_R1.T C3L-04791 HNSCC miRNA-Seq tumor CPT0250310009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L004_R1_001.unaln.bam 278783160 BAM S42_L004_R1 submitted_unaligned CPTAC3 35dccd7b-dde0-4317-b180-8ac30802dad0 b5d02a50aae2e0298556bdd86c68ead3 {"aliquot_tag": "ALQ_bcf99a95", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.miRNA-Seq.T.hg38 C3L-04791 HNSCC miRNA-Seq tumor CPT0250310009 a883bc4b-c020-4c94-bf7f-f640939085a4_mirnaseq_gdc_realn.bam 306761871 BAM harmonized CPTAC3 1e4db173-b057-4cbb-a21d-24682ebdb7db 91ff8ceb02a9ebd63b3434abc72ac97d {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.RNA-Seq.chimeric.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.chimeric.gdc_realn.bam 39842054 BAM chimeric harmonized CPTAC3 800f0174-e135-4c49-bdd5-48b255a01dfb 218d8019388997d7d297ae440b33d398 {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04791.RNA-Seq.chimeric.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.chimeric.gdc_realn.bam 195418726 BAM chimeric harmonized CPTAC3 f9eee9b6-d894-4257-8991-8396ecde39c0 33941d702074658248fc8c4509afe815 {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.RNA-Seq.genomic.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.genomic.gdc_realn.bam 8358159392 BAM genomic harmonized CPTAC3 75ed03b5-4581-43c7-8cc2-2f4fe0a271de 123bf58eb8dede12fec895a42d5f4279 {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04791.RNA-Seq.genomic.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.genomic.gdc_realn.bam 9595231656 BAM genomic harmonized CPTAC3 0eb49899-8a58-4759-bf6f-28b07713e73f 71db24180f5be0862a89d04443b6efb7 {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.RNA-Seq.S13_L004_R1.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R1_001.fastq.gz 4028945926 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 d5cca660-598a-4728-a855-243157a6bb55 ebda52e4d4f5fb48ef8de5a1950ffde5 {"aliquot_tag": "ALQ_5686d464", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04791.RNA-Seq.S13_L004_R2.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R2_001.fastq.gz 4617091802 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 4c220caa-87b7-4a9e-9250-50b6fd084faa 532bc9e8bc4743c7482d0e3237d1a607 {"aliquot_tag": "ALQ_5686d464", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04791.RNA-Seq.S4_L001_R1.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4530786617 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 d2458585-b886-4b09-86a0-a0f29977f3af 15ed01f463784652648e5c2b609f1360 {"aliquot_tag": "ALQ_bcf99a95", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.RNA-Seq.S4_L001_R2.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4655993230 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 7c1c0732-04b1-46b5-9b86-f1eda6ccc0b3 40bd800121cc61b86905d5c5c486484c {"aliquot_tag": "ALQ_bcf99a95", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.RNA-Seq.transcriptome.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.transcriptome.gdc_realn.bam 10787494196 BAM transcriptome harmonized CPTAC3 2b92ed18-5cdd-47a4-8e80-74e8adc58176 137460d419d134e7529c374adf6263ab {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-04791.RNA-Seq.transcriptome.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.transcriptome.gdc_realn.bam 11336484739 BAM transcriptome harmonized CPTAC3 ae49c9eb-fa1a-4fa0-ae28-d4e607898bcb 140fed6e6812cb6db2a70db3ea52f1ce {"aliquot_tag": "ALQ_bcf99a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.WGS.N C3L-04791 HNSCC WGS blood_normal CPT0250450002 CPT0250450002.WholeGenome.RP-1303.bam 78530104123 BAM submitted_aligned CPTAC3 103fed94-250f-4832-a9e0-647398187bd1 0a7d7ed2e26b6d2a9611a3b5f0ba474b {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04791.WGS.N.hg38 C3L-04791 HNSCC WGS blood_normal CPT0250450002 a86d49fd-960f-4d9b-8a34-b865c7c18601_wgs_gdc_realn.bam 114891968351 BAM harmonized CPTAC3 ef0d81fb-876a-49d7-b376-c9c4a9f74120 27dcb9a58a5b18f95d16d8984ab728f0 {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04791.WGS.T C3L-04791 HNSCC WGS tumor CPT0250310006 CPT0250310006.WholeGenome.RP-1303.bam 70790331425 BAM submitted_aligned CPTAC3 89e0b7fe-cb0d-44d7-bcf8-0c54b02d8738 8e959be9df3b861263139d455e602b85 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.WGS.T.hg38 C3L-04791 HNSCC WGS tumor CPT0250310006 11ba5a36-4f9f-4190-b5d3-0fce329153e2_wgs_gdc_realn.bam 105285574802 BAM harmonized CPTAC3 2f722cdb-c26e-49f6-81ff-354a229f13b4 45e86e891d201a55474cd22bf04176a7 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.WXS.N C3L-04791 HNSCC WXS blood_normal CPT0250450002 CPT0250450002.WholeExome.RP-1303.bam 22277337885 BAM submitted_aligned CPTAC3 284a6d96-cb2f-46cd-a140-7027a076c55c ed1e1a28b42bf718211d50fe32e84154 {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04791.WXS.N.hg38 C3L-04791 HNSCC WXS blood_normal CPT0250450002 a86d49fd-960f-4d9b-8a34-b865c7c18601_wxs_gdc_realn.bam 30859792880 BAM harmonized CPTAC3 b9bd40ed-4000-4486-9101-a8c417b881eb 52cbbad21cfc6286cd76bf08be33861a {"aliquot_tag": "ALQ_c3aed565", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04791.WXS.T C3L-04791 HNSCC WXS tumor CPT0250310006 CPT0250310006.WholeExome.RP-1303.bam 20910524021 BAM submitted_aligned CPTAC3 517d8510-ad8f-4cbd-80f2-f454ddb9ccf8 18982a967ad73d32149d17c70dc0fc57 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04791.WXS.T.hg38 C3L-04791 HNSCC WXS tumor CPT0250310006 11ba5a36-4f9f-4190-b5d3-0fce329153e2_wxs_gdc_realn.bam 29861325855 BAM harmonized CPTAC3 0bfcfa27-88b4-495c-9035-ad1a74135e1d 5b1d92060e521c09ba8a499815485e95 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04792.MethArray.Green.A C3L-04792 LSCC Methylation_Array tissue_normal CPT0297670006 204372030072_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 db97db87-a423-418d-8411-a4cb23bbc5fa 8572e22f78b913ae11547057d6c3fe83 {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.MethArray.Green.T C3L-04792 LSCC Methylation_Array tumor CPT0297650006 204372030071_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 846d7672-3a67-4054-8967-80debe588582 22e6922af305c2e745f9f00f96098fbf {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.MethArray.Red.A C3L-04792 LSCC Methylation_Array tissue_normal CPT0297670006 204372030072_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 c04eddb8-fc10-496e-936c-59059d64a669 f76cb61dd5023f6208bfb829e35958f7 {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.MethArray.Red.T C3L-04792 LSCC Methylation_Array tumor CPT0297650006 204372030071_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 5c20cb62-ca4f-4e38-9095-8a8d8fc213d4 a985594101db5cb7d00ef92dad0803df {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.miRNA-Seq.A.hg38 C3L-04792 LSCC miRNA-Seq tissue_normal CPT0297670009 330774a2-ceef-4359-ab92-a28c80cbb747_mirnaseq_gdc_realn.bam 209889955 BAM harmonized CPTAC3 05c3435c-9a98-4bf8-bcd3-9c0ddbad9202 4ec9a9f4721d08792f76b08a0446b824 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.miRNA-Seq.S21_L005_R1.A C3L-04792 LSCC miRNA-Seq tissue_normal CPT0297670009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTTTCG_S21_L005_R1_001.unaln.bam 191736809 BAM S21_L005_R1 submitted_unaligned CPTAC3 23e0d790-2403-481e-8b94-d6ce0bc0b5eb f8fdbc4df055f656793f09365c2ba525 {"aliquot_tag": "ALQ_f17cd547", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.miRNA-Seq.S47_L007_R1.T C3L-04792 LSCC miRNA-Seq tumor CPT0297650009 200224_UNC31-K00269_0267_AHC722BBXY_TCGAAG_S47_L007_R1_001.unaln.bam 213001197 BAM S47_L007_R1 submitted_unaligned CPTAC3 c0b9bd53-207c-4bda-a6cf-4eb9be9a5884 1c2750c9c1d026ced71e21d7ecd2cb9a {"aliquot_tag": "ALQ_8bbc8627", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.miRNA-Seq.T.hg38 C3L-04792 LSCC miRNA-Seq tumor CPT0297650009 0dc29a88-6a9d-4b0e-b7b4-1c97fefeb75e_mirnaseq_gdc_realn.bam 238310191 BAM harmonized CPTAC3 0a9ab958-458c-457b-8a24-ca733ea48d56 cdcf52efdb8b19294891773dc07ee25b {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.RNA-Seq.chimeric.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.chimeric.gdc_realn.bam 26904747 BAM chimeric harmonized CPTAC3 0f2be7ae-0994-4b8f-a69d-724aec6b137c ff07f8832f49640cbe81439337791e61 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.RNA-Seq.chimeric.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.chimeric.gdc_realn.bam 37316326 BAM chimeric harmonized CPTAC3 85e44a96-2fc8-4c87-9eee-72b322b2e693 c4f2cdbd0556d291b4d51f4aa2668fa8 {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.RNA-Seq.genomic.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.genomic.gdc_realn.bam 8446510475 BAM genomic harmonized CPTAC3 53091512-3f72-4c26-83b2-084181ecce3c a584e2e97d27e1cddb08fa4384758de7 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.RNA-Seq.genomic.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.genomic.gdc_realn.bam 8787844267 BAM genomic harmonized CPTAC3 300df8fb-83e0-4c57-be28-4834051e626f 25a451bddea0a14bf718ececd2b057e0 {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.RNA-Seq.S15_L004_R1.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R1_001.fastq.gz 4296198891 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 1234511d-d6ff-4799-93cb-ee93a0424bf6 1b30c01af76db7d23ae09ea13bc49b2f {"aliquot_tag": "ALQ_8bbc8627", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.RNA-Seq.S15_L004_R2.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R2_001.fastq.gz 4594352733 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 d542e6b6-4511-4dcf-a6c2-33b1adab5f18 212b751a4d0f7104737710dc151a7099 {"aliquot_tag": "ALQ_8bbc8627", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.RNA-Seq.S8_L002_R1.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R1_001.fastq.gz 3853211006 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 2998a5d3-97aa-432a-9be0-36e6b7a46c38 32b1d56e26606a1a4a6f454222d0ac44 {"aliquot_tag": "ALQ_f17cd547", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.RNA-Seq.S8_L002_R2.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R2_001.fastq.gz 4587257386 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 52ab69d3-4ae5-4074-866c-cef78151abaf 08f7a1182c30478d2a2d1e5023d5b228 {"aliquot_tag": "ALQ_f17cd547", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.RNA-Seq.transcriptome.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.transcriptome.gdc_realn.bam 10964426969 BAM transcriptome harmonized CPTAC3 c8f66e8a-0b94-4bc0-9cb1-5de2461b4179 018375ee35e0fa9dd2ef692211c63581 {"aliquot_tag": "ALQ_f17cd547", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.RNA-Seq.transcriptome.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.transcriptome.gdc_realn.bam 12396611725 BAM transcriptome harmonized CPTAC3 7577014f-67ba-49be-945c-e05b0e95e1e0 e79517b9f36ed08a2dca01e4c8951976 {"aliquot_tag": "ALQ_8bbc8627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.WGS.N C3L-04792 LSCC WGS blood_normal CPT0297780002 CPT0297780002.WholeGenome.RP-2158.bam 25245438802 BAM submitted_aligned CPTAC3 2826d306-3653-4d2f-80e3-3544fd6f8fb0 06204361571e2f0495dde1605a1c2ec1 {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04792.WGS.N.hg38 C3L-04792 LSCC WGS blood_normal CPT0297780002 d58e9015-53d6-4a74-b3dc-55c27acd8016_wgs_gdc_realn.bam 73153320417 BAM harmonized CPTAC3 2e6c3df5-9ace-47df-ad27-5c5c1ccf902c 7a774c32cd5676792798ae2fb614c84f {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04792.WGS.T C3L-04792 LSCC WGS tumor CPT0297650006 CPT0297650006.WholeGenome.RP-2158.bam 27485373003 BAM submitted_aligned CPTAC3 ed9627aa-97e9-4b49-850a-100f7a771bc8 0b295e25a1012e97f32876d9e154e452 {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.WGS.T.hg38 C3L-04792 LSCC WGS tumor CPT0297650006 d283d472-cff8-47b2-835d-2888bf62bb3c_wgs_gdc_realn.bam 80550743528 BAM harmonized CPTAC3 e4ba2471-cdc0-4ac0-ad6c-d63174dfa996 4cc5a89932886503174c3aa1a2d9b634 {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.WXS.A C3L-04792 LSCC WXS tissue_normal CPT0297670006 CPT0297670006.WholeExome.RP-1303.bam 25422919637 BAM submitted_aligned CPTAC3 d822892f-0577-4c64-aaf1-07ead8360961 04e338ddd301709e8bd2bd4db30875ef {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.WXS.A.hg38 C3L-04792 LSCC WXS tissue_normal CPT0297670006 f48ae438-bf64-4d54-beff-bf931145dae5_wxs_gdc_realn.bam 35573024080 BAM harmonized CPTAC3 f9cc7d7a-eab2-4254-974d-6abdab299b8f 6581d665328ac079b51e1c679c4522c0 {"aliquot_tag": "ALQ_61c3c8d6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04792.WXS.N C3L-04792 LSCC WXS blood_normal CPT0297780002 CPT0297780002.WholeExome.RP-1303.bam 28125500809 BAM submitted_aligned CPTAC3 c9515713-ecf2-4947-9b46-41360ca878b8 a0d0cf3e38aaa439b44ea3cc8d397a4c {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04792.WXS.N.hg38 C3L-04792 LSCC WXS blood_normal CPT0297780002 d58e9015-53d6-4a74-b3dc-55c27acd8016_wxs_gdc_realn.bam 38050293278 BAM harmonized CPTAC3 32bcb2fe-f0b7-4347-9d61-d007a3612005 dec8c48d563a05ca5baa9c7314f5a2fd {"aliquot_tag": "ALQ_2fa248bb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04792.WXS.T C3L-04792 LSCC WXS tumor CPT0297650006 CPT0297650006.WholeExome.RP-1303.bam 26505754048 BAM submitted_aligned CPTAC3 64477b16-df7a-4c73-8782-3510ec7b2afd 71be52ab371efc2dda8ac619efbe4c66 {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04792.WXS.T.hg38 C3L-04792 LSCC WXS tumor CPT0297650006 d283d472-cff8-47b2-835d-2888bf62bb3c_wxs_gdc_realn.bam 36638269036 BAM harmonized CPTAC3 d2f325d0-bdd6-4030-a786-4fe0452985d4 17173a546a9d5cfd64372764e4f1714c {"aliquot_tag": "ALQ_1b039bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.MethArray.Green.T C3L-04795 GBM Methylation_Array tumor CPT0257640006 204930630113_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 7a53724a-dac0-47ef-97ce-55cf3d2d94f6 e5736d0698892926599687fe1355fb20 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.MethArray.Red.T C3L-04795 GBM Methylation_Array tumor CPT0257640006 204930630113_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 2fe76084-e231-40b3-b882-13ccc5fd05ec 5960a7afdd81148e4e29fd1aa8ac6120 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.miRNA-Seq.S1_L001_R1.T C3L-04795 GBM miRNA-Seq tumor CPT0257640009 200403_UNC31-K00269_0274_AHCF7GBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 298863378 BAM S1_L001_R1 submitted_unaligned CPTAC3 64cf5a0d-50c0-49b4-8ff4-a220d43ad1b2 1a4f200a83c0082d1053f6bb314dbbd7 {"aliquot_tag": "ALQ_e173bad8", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.miRNA-Seq.T.hg38 C3L-04795 GBM miRNA-Seq tumor CPT0257640009 f44042cb-e293-4f34-884d-4ed796d4d746_mirnaseq_gdc_realn.bam 335243543 BAM harmonized CPTAC3 38edfdd0-d6e2-4227-9e62-42dd598e4e88 c5f46d7c55f022e6817e2f27082cdbc0 {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.RNA-Seq.chimeric.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.chimeric.gdc_realn.bam 33272009 BAM chimeric harmonized CPTAC3 1e711ed8-072d-42df-9b4b-351bcf23bd9b 21bc6799cbdffda23200e9a3ff8ae32b {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.RNA-Seq.genomic.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.genomic.gdc_realn.bam 7771192212 BAM genomic harmonized CPTAC3 92aca12b-142c-4893-9f79-7fff37b19f76 2d289e63aabdb46c901d63d9f26c6657 {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.RNA-Seq.S17_L005_R1.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 3633010663 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 0ff10436-30c0-4571-a5f1-db72929506b8 688c644298eb23aa2d7c31f5bb943c2e {"aliquot_tag": "ALQ_e173bad8", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.RNA-Seq.S17_L005_R2.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 d3c4c707-2ecb-44db-9c2b-04a6f624d67f f560ddfe6756b0bb5baf8ac6ebc3a8c1 {"aliquot_tag": "ALQ_e173bad8", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.RNA-Seq.transcriptome.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.transcriptome.gdc_realn.bam 8723813806 BAM transcriptome harmonized CPTAC3 97f66948-9536-49ef-8e9a-73a42c83c704 487f27da039f8976dcd0d9214df6e443 {"aliquot_tag": "ALQ_e173bad8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.WGS.N C3L-04795 GBM WGS blood_normal CPT0257730002 CPT0257730002.WholeGenome.RP-2158.bam 21078681011 BAM submitted_aligned CPTAC3 d5594591-b0be-46d5-a50b-687a1116392c 995ab0767e58ee7fe1efedad6e9d3530 {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04795.WGS.N.hg38 C3L-04795 GBM WGS blood_normal CPT0257730002 66331f85-ba28-4eb8-9df1-60a3cd38d91a_wgs_gdc_realn.bam 59840869093 BAM harmonized CPTAC3 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 3bcb06c175b4d94e65cc21b849bcda1c {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04795.WGS.T C3L-04795 GBM WGS tumor CPT0257640006 CPT0257640006.WholeGenome.RP-2158.bam 29876299653 BAM submitted_aligned CPTAC3 a47b409b-7dcf-4b2a-b0b0-d101f0883464 3f5e62ccaa486489891ddae53f0bb3e6 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.WGS.T.hg38 C3L-04795 GBM WGS tumor CPT0257640006 376e0e57-4948-421b-a670-e310f4072910_wgs_gdc_realn.bam 88596718616 BAM harmonized CPTAC3 10d0d280-5380-4979-84b9-54470cf8aae8 cc656015ce0b9c9670cc4a69a4a5c834 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.WXS.N C3L-04795 GBM WXS blood_normal CPT0257730002 CPT0257730002.WholeExome.RP-1303.bam 28990985033 BAM submitted_aligned CPTAC3 26d444b9-7835-4344-9f0c-2ad18b4c93e1 6cc6a42a07ff29b5a93c444f39489a01 {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04795.WXS.N.hg38 C3L-04795 GBM WXS blood_normal CPT0257730002 66331f85-ba28-4eb8-9df1-60a3cd38d91a_wxs_gdc_realn.bam 39013789635 BAM harmonized CPTAC3 bba78a37-3fd2-4f10-bd89-b298362fed0e cb987b2510d4ecd2ede9cfb489ee54a4 {"aliquot_tag": "ALQ_fdd6ce5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04795.WXS.T C3L-04795 GBM WXS tumor CPT0257640006 CPT0257640006.WholeExome.RP-1303.bam 22044187706 BAM submitted_aligned CPTAC3 1b0cbbdb-5519-478f-8a0d-0ae8ed08c3d2 2a15cfe91c9120ba7e86e137d67f1763 {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04795.WXS.T.hg38 C3L-04795 GBM WXS tumor CPT0257640006 376e0e57-4948-421b-a670-e310f4072910_wxs_gdc_realn.bam 30536537645 BAM harmonized CPTAC3 281e34f3-b97d-4b82-93a2-12421209116a b8ec118f53ce0c105d909ddc0d83024a {"aliquot_tag": "ALQ_71cca749", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.MethArray.Green.A C3L-04804 LSCC Methylation_Array tissue_normal CPT0271710009 204372030127_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2b9765b2-5c7f-4926-a80a-54bc5a8d1361 46870db7120c75ab194b79d04f735f63 {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.MethArray.Green.T C3L-04804 LSCC Methylation_Array tumor CPT0271660006 204367490057_R03C01_Grn.idat 13677905 IDAT Green NA CPTAC3 b863f361-1276-405a-a3a9-20cb4d67c752 70aaaaff776b9508bb386b5ea0d6dc5c {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.MethArray.Red.A C3L-04804 LSCC Methylation_Array tissue_normal CPT0271710009 204372030127_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 163fa391-0bc9-4497-9387-66ba09a75a8d b89d93f099954e60268c4060f64705e1 {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.MethArray.Red.T C3L-04804 LSCC Methylation_Array tumor CPT0271660006 204367490057_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 0d454711-f07b-4877-89d3-0c285bf2803e 2cb6d091c9be8d4cd89e6b56383c88c8 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.miRNA-Seq.A.hg38 C3L-04804 LSCC miRNA-Seq tissue_normal CPT0271710006 ae14e750-f719-4d94-a2da-27865eb14020_mirnaseq_gdc_realn.bam 321477449 BAM harmonized CPTAC3 2b1791cd-4163-454a-ae39-ee14a93dbaa6 cacf8433520e8393eec860beb4044b07 {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.miRNA-Seq.S32_L008_R1.T C3L-04804 LSCC miRNA-Seq tumor CPT0271660009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACTCA_S32_L008_R1_001.unaln.bam 178949664 BAM S32_L008_R1 submitted_unaligned CPTAC3 d16746d6-b11f-4b67-ad79-7504dc4a04a8 265a47252633253bb0afb52def96fac7 {"aliquot_tag": "ALQ_ba46dbff", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.miRNA-Seq.S44_L006_R1.A C3L-04804 LSCC miRNA-Seq tissue_normal CPT0271710006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TATAAT_S44_L006_R1_001.unaln.bam 288986942 BAM S44_L006_R1 submitted_unaligned CPTAC3 8a4b284e-c084-4a7e-9def-3dade40feeaa f60bcb0148ec7d50f9d99fc9907ca0aa {"aliquot_tag": "ALQ_5385c9db", "sample": "S44", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.miRNA-Seq.T.hg38 C3L-04804 LSCC miRNA-Seq tumor CPT0271660009 ebe8d36a-a587-4369-96bc-ef167787b04e_mirnaseq_gdc_realn.bam 202434701 BAM harmonized CPTAC3 e58d4af7-5a58-45f3-8745-145db6fa4e79 b49d31bdf2a248f1b7de733640e5cc85 {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.RNA-Seq.chimeric.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.chimeric.gdc_realn.bam 29481489 BAM chimeric harmonized CPTAC3 344e3285-ab3f-4783-a248-f2af53e0b168 eaa1df7a2d41905f4486d2e085b73565 {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.RNA-Seq.chimeric.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.chimeric.gdc_realn.bam 120967413 BAM chimeric harmonized CPTAC3 1c9e1399-a0f7-40a6-907f-a43a54534425 53bedfce20576dbcc83710ef775bd08d {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.RNA-Seq.genomic.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.genomic.gdc_realn.bam 8822852167 BAM genomic harmonized CPTAC3 7f5d7002-9a2a-4a4f-a484-9d0bcd0051dd 13a2612fc2b915a88224cabfbfaed97b {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.RNA-Seq.genomic.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.genomic.gdc_realn.bam 7410818684 BAM genomic harmonized CPTAC3 85d27037-af2d-4daf-b95e-b4cbb9ff1b0a 1333ec817b801ddf8421d69af3355ad4 {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.RNA-Seq.S28_L007_R1.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R1_001.fastq.gz 3954974557 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 1dc0c8e5-af32-494f-87ce-addfc5172591 f6163e0ac884cf90fa8cb2d721a2e490 {"aliquot_tag": "ALQ_5385c9db", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.RNA-Seq.S28_L007_R2.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R2_001.fastq.gz 4879925528 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 73175b4a-676f-40dc-96b1-b7acbc3193fa f456b4a5e0e3fe5634e239f97c5dc05f {"aliquot_tag": "ALQ_5385c9db", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.RNA-Seq.S31_L008_R1.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R1_001.fastq.gz 3630606497 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 8f1df38c-a08a-4163-9c6f-040406b7c08b ad77b41a52b17d6e781c582ba98db759 {"aliquot_tag": "ALQ_ba46dbff", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.RNA-Seq.S31_L008_R2.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R2_001.fastq.gz 3982146068 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 5a1d038c-27db-4d50-8c01-ac4f8468e8bf 0f499ecb349d8733b833d0c4de807dc4 {"aliquot_tag": "ALQ_ba46dbff", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.RNA-Seq.transcriptome.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.transcriptome.gdc_realn.bam 10752437586 BAM transcriptome harmonized CPTAC3 0e5db407-eae7-4947-9404-67d08ca6a5b1 3b1e5aaf381333bda90d4b05f835522f {"aliquot_tag": "ALQ_5385c9db", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.RNA-Seq.transcriptome.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.transcriptome.gdc_realn.bam 8845654064 BAM transcriptome harmonized CPTAC3 8d8faa69-9202-4bc8-aefa-6a1d63487a66 5716f9d940b5c2f0eef807632966548c {"aliquot_tag": "ALQ_ba46dbff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.WGS.N C3L-04804 LSCC WGS blood_normal CPT0271780002 CPT0271780002.WholeGenome.RP-2158.bam 24517687844 BAM submitted_aligned CPTAC3 499aeed9-14f5-42b9-88df-11674f74cd4c 82751da4b019be1da3a1bc87641ed38f {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04804.WGS.N.hg38 C3L-04804 LSCC WGS blood_normal CPT0271780002 94c1986f-de49-4808-92d5-59f1854e9cab_wgs_gdc_realn.bam 73420136435 BAM harmonized CPTAC3 39910c35-c8c1-48ac-bace-b2628f125c54 19794406f8bebe1b5b27128c60dd0471 {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04804.WGS.T C3L-04804 LSCC WGS tumor CPT0271660006 CPT0271660006.WholeGenome.RP-2158.bam 26118439189 BAM submitted_aligned CPTAC3 46c9466c-2837-4522-8e4c-1840013ca0c3 d1c2c48fc300fd88c6d74801962b2bb0 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.WGS.T.hg38 C3L-04804 LSCC WGS tumor CPT0271660006 31f213b0-bb8d-4681-b436-da192eedc9df_wgs_gdc_realn.bam 78966557835 BAM harmonized CPTAC3 c30c30ef-66ac-4d2c-8328-73abf63e57bd 297a4ef332d1cc8d284910d4e97829c8 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.WXS.A C3L-04804 LSCC WXS tissue_normal CPT0271710009 CPT0271710009.WholeExome.RP-1303.bam 22814879690 BAM submitted_aligned CPTAC3 03a4b125-5e5b-44da-a44f-2dd860c86cec fdc47d1aeec44d5ba9627adc9dc6e170 {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.WXS.A.hg38 C3L-04804 LSCC WXS tissue_normal CPT0271710009 9c7b6c10-7085-4d97-acbd-e1560a509892_wxs_gdc_realn.bam 31128175203 BAM harmonized CPTAC3 40a5145a-ac45-4253-bce4-261d00e900de 652a574eade0f49adf3510ae5fabe0af {"aliquot_tag": "ALQ_c33ad44a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04804.WXS.N C3L-04804 LSCC WXS blood_normal CPT0271780002 CPT0271780002.WholeExome.RP-1303.bam 22508946655 BAM submitted_aligned CPTAC3 a87ada30-899e-4b11-8e64-e1899fde8ba6 9c829c6a28664a26240e046bfe04e8c1 {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04804.WXS.N.hg38 C3L-04804 LSCC WXS blood_normal CPT0271780002 94c1986f-de49-4808-92d5-59f1854e9cab_wxs_gdc_realn.bam 29874049121 BAM harmonized CPTAC3 cc2c190f-7c1d-431b-91aa-b898a70ff637 f8eb803d9015c351110a7a361aac84c9 {"aliquot_tag": "ALQ_59f86fb3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04804.WXS.T C3L-04804 LSCC WXS tumor CPT0271660006 CPT0271660006.WholeExome.RP-1303.bam 30498353188 BAM submitted_aligned CPTAC3 077c315f-adf6-467b-b75b-bd1b92a79b46 b1e2df41259a700085af2d2f2623fca4 {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04804.WXS.T.hg38 C3L-04804 LSCC WXS tumor CPT0271660006 31f213b0-bb8d-4681-b436-da192eedc9df_wxs_gdc_realn.bam 42185960784 BAM harmonized CPTAC3 2bdb8268-7e77-4f2f-bec1-38f36bf22c36 cddc3c5e3947eaed1fc9892daaba1aee {"aliquot_tag": "ALQ_2af9c66e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.MethArray.Green.A C3L-04808 LSCC Methylation_Array tissue_normal CPT0298310006 204372030023_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 0a893f44-b1b3-49b9-858e-a576a8b0e5e9 68425ab20faaec4a2a66f423cd97d8cf {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.MethArray.Green.T C3L-04808 LSCC Methylation_Array tumor CPT0298280006 204372030070_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 dd647f25-d6d7-48ff-8d00-4119883237fb 9a57dd3d518fd5187ff16943882c4a80 {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.MethArray.Red.A C3L-04808 LSCC Methylation_Array tissue_normal CPT0298310006 204372030023_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 d71b521e-9c84-4e90-a68e-471e49715f47 bc83d3c47160dcdbef129a9bc84815a2 {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.MethArray.Red.T C3L-04808 LSCC Methylation_Array tumor CPT0298280006 204372030070_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 2d822cdd-0349-4b15-b53b-eab011821f3a 19e83254d0bea85c62d6e1cacddb84b7 {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.miRNA-Seq.A.hg38 C3L-04808 LSCC miRNA-Seq tissue_normal CPT0298310009 cd332395-ee37-463e-a513-2ba85b0e53d7_mirnaseq_gdc_realn.bam 247111078 BAM harmonized CPTAC3 62a18584-2c36-4648-90ea-a432266d924d 4cb0be3ccfd93c921bd16a2fa4a51ccf {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.miRNA-Seq.S16_L005_R1.A C3L-04808 LSCC miRNA-Seq tissue_normal CPT0298310009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGTAGC_S16_L005_R1_001.unaln.bam 216812686 BAM S16_L005_R1 submitted_unaligned CPTAC3 4881423a-27a3-4e27-b557-9af5bbaee921 47d2e1c1e4b5e433e094b6e4eac751cf {"aliquot_tag": "ALQ_d8b9c1bd", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.miRNA-Seq.S2_L006_R1.T C3L-04808 LSCC miRNA-Seq tumor CPT0298280009 200224_UNC31-K00269_0267_AHC722BBXY_CGATGT_S2_L006_R1_001.unaln.bam 212607497 BAM S2_L006_R1 submitted_unaligned CPTAC3 2d12e9d7-a277-463b-b314-42bafaf125f7 dc2b110d28a9dcef757cc791be0d4961 {"aliquot_tag": "ALQ_1ef57069", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.miRNA-Seq.T.hg38 C3L-04808 LSCC miRNA-Seq tumor CPT0298280009 6a73dd0b-52e1-4a79-90cd-ceaa7308fa70_mirnaseq_gdc_realn.bam 237118876 BAM harmonized CPTAC3 c3c82b64-0873-418e-a936-d8a3554bc586 f55db0b3df8a62099dce4efe8cae2188 {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.RNA-Seq.chimeric.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.chimeric.gdc_realn.bam 39894481 BAM chimeric harmonized CPTAC3 00881cab-b3d7-4c88-a2de-c1da328d0a7c 5f47580e8af7272c59f3e678d6c6f073 {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.RNA-Seq.chimeric.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.chimeric.gdc_realn.bam 57775833 BAM chimeric harmonized CPTAC3 1c58cb37-3297-45d1-bb1c-7567ff66157f 1fd16860e8d541b165df86a295353c8f {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.RNA-Seq.genomic.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.genomic.gdc_realn.bam 9446606319 BAM genomic harmonized CPTAC3 d1092820-550a-49fc-a300-cc50aef42e2c a7b5a64e5f7644e74fbbbb495c35f5dd {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.RNA-Seq.genomic.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.genomic.gdc_realn.bam 7615918809 BAM genomic harmonized CPTAC3 8bb03f1b-326c-40d0-8622-b6fba28eced9 453d63b084243058b0c260f565110473 {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.RNA-Seq.S18_L005_R1.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R1_001.fastq.gz 3879878723 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 b8010249-4903-4091-9712-b2f9e90e8cc7 283ce1e0a8414047be8e44d4fb72a098 {"aliquot_tag": "ALQ_1ef57069", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.RNA-Seq.S18_L005_R2.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R2_001.fastq.gz 4086445798 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 dc42b8fe-573c-4d61-bc51-0c05161b88c0 1230615871e493141c1ec944a7e4c3ea {"aliquot_tag": "ALQ_1ef57069", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.RNA-Seq.S6_L002_R1.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R1_001.fastq.gz 4288462316 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 712589eb-f67d-4055-a20f-0bd599b09d5c 878f9fecbbac5f1e108a4dc59351a3c3 {"aliquot_tag": "ALQ_d8b9c1bd", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.RNA-Seq.S6_L002_R2.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R2_001.fastq.gz 5191911855 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 148e8f13-4990-4215-8baa-c2cb4ab4974c 58b4f622a1e911a643c648c0350ba6d4 {"aliquot_tag": "ALQ_d8b9c1bd", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.RNA-Seq.transcriptome.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.transcriptome.gdc_realn.bam 11408164322 BAM transcriptome harmonized CPTAC3 3afa1900-c5bd-4e5f-8a8f-871e1547b5f5 e2070c4574730cdf8a101f6d2fea3518 {"aliquot_tag": "ALQ_d8b9c1bd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.RNA-Seq.transcriptome.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.transcriptome.gdc_realn.bam 10865133117 BAM transcriptome harmonized CPTAC3 4792290d-6c64-4371-b6ba-6cbeea0b15cb d16d90680cd14b2a5c550541cc4c72c0 {"aliquot_tag": "ALQ_1ef57069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.WGS.N C3L-04808 LSCC WGS blood_normal CPT0298360002 CPT0298360002.WholeGenome.RP-2158.bam 19153558988 BAM submitted_aligned CPTAC3 bc7092fd-2f78-4f61-b9cc-0571ac6e2812 5e58f468cab4bd0e5ad298f7aecdfed5 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04808.WGS.N.hg38 C3L-04808 LSCC WGS blood_normal CPT0298360002 c15ee2a6-727a-430d-b7c0-61dc832d0dc9_wgs_gdc_realn.bam 57262199273 BAM harmonized CPTAC3 a78e3b98-6eae-4067-858e-c2a3835b7b21 954d6476a753f3ea0802b02ff45d9c74 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04808.WGS.T C3L-04808 LSCC WGS tumor CPT0298280006 CPT0298280006.WholeGenome.RP-2158.bam 22740077927 BAM submitted_aligned CPTAC3 258726c5-7312-4eff-a525-63dfeff141c5 667e24695ffcf1eb133936afb9c82ebe {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.WGS.T.hg38 C3L-04808 LSCC WGS tumor CPT0298280006 d9661c5a-e609-4b7a-8ddf-03ee137c8ab6_wgs_gdc_realn.bam 68211453696 BAM harmonized CPTAC3 59d4d215-4562-4cab-b497-130d60b73149 92aa05bc63bc4894350445099c026f1f {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.WXS.A C3L-04808 LSCC WXS tissue_normal CPT0298310006 CPT0298310006.WholeExome.RP-1303.bam 23872272738 BAM submitted_aligned CPTAC3 617170fe-5a59-4c2e-acbd-227eaf287127 a7defe434ec43c38eae48e08a43733d7 {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.WXS.A.hg38 C3L-04808 LSCC WXS tissue_normal CPT0298310006 ec796afb-11ce-457e-858a-23dd50105e7c_wxs_gdc_realn.bam 32486226498 BAM harmonized CPTAC3 b8b776e7-8ea1-4738-906f-f74fd2e90f08 a5f133e275211216dd2274197e3241e5 {"aliquot_tag": "ALQ_4806dc2c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04808.WXS.N C3L-04808 LSCC WXS blood_normal CPT0298360002 CPT0298360002.WholeExome.RP-1303.bam 22364477269 BAM submitted_aligned CPTAC3 3ef92f33-9e03-413c-aa5a-4552b10e873d 669fe91040cbf0cb68c588312ccfd023 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04808.WXS.N.hg38 C3L-04808 LSCC WXS blood_normal CPT0298360002 c15ee2a6-727a-430d-b7c0-61dc832d0dc9_wxs_gdc_realn.bam 30061205588 BAM harmonized CPTAC3 6e147259-ebe3-49f3-8352-fa450a059630 a28cef33d9693496fef5a2fe4babd6c8 {"aliquot_tag": "ALQ_fd4bc425", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04808.WXS.T C3L-04808 LSCC WXS tumor CPT0298280006 CPT0298280006.WholeExome.RP-1303.bam 33141914649 BAM submitted_aligned CPTAC3 5f9c8604-7238-485a-9b95-4cdc6cbc499c 6248e1c18d1f9706b3056f32e4d29c38 {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04808.WXS.T.hg38 C3L-04808 LSCC WXS tumor CPT0298280006 d9661c5a-e609-4b7a-8ddf-03ee137c8ab6_wxs_gdc_realn.bam 44530671372 BAM harmonized CPTAC3 dc233d63-d074-4c61-862a-486ccb88bc73 ab805bac50d82f508cd755900751126d {"aliquot_tag": "ALQ_8e4a6df8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04844.MethArray.Green.T C3L-04844 HNSCC Methylation_Array tumor CPT0248330006 203281980233_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e45f6d83-945e-436a-a1e2-e9994cc45655 541cc27721a6ce26a2f5bf82a31e694b {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.MethArray.Red.T C3L-04844 HNSCC Methylation_Array tumor CPT0248330006 203281980233_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 1430a45c-97d4-4ebe-a68c-cdb7ec4114bd 581d11b6a8aaa3d618d88c8085954db5 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.miRNA-Seq.S44_L007_R1.T C3L-04844 HNSCC miRNA-Seq tumor CPT0248330009 190228_UNC32-K00270_0151_AHYLY3BBXX_TATAAT_S44_L007_R1_001.unaln.bam 253673217 BAM S44_L007_R1 submitted_unaligned CPTAC3 bd348995-2ed0-41cf-a231-f551265d1311 918065cefd2c914cf50a650be7010dd9 {"aliquot_tag": "ALQ_397c870c", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.miRNA-Seq.T.hg38 C3L-04844 HNSCC miRNA-Seq tumor CPT0248330009 d1629195-a43e-4a0f-bb20-a5f7371b0c0c_mirnaseq_gdc_realn.bam 283633542 BAM harmonized CPTAC3 58b4b314-5a6e-4aee-b455-e5171c4b83c5 aac996f7498d059f853dbc328f24bbab {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.RNA-Seq.chimeric.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.chimeric.gdc_realn.bam 35296017 BAM chimeric harmonized CPTAC3 cd1155b0-83ac-4b88-b8e5-212f251849bb be3245ecfd5271525fcc496c632b59af {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.RNA-Seq.genomic.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.genomic.gdc_realn.bam 10139308398 BAM genomic harmonized CPTAC3 67c2bb48-7baf-4910-9a42-08365964558f 483abf9efbd153126f75ac988e184167 {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.RNA-Seq.S20_L005_R1.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4787124941 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 6765873c-3b79-4afe-a8e1-f783348fbb2e 81082e1cbfa10dade3d57f2fa25782ef {"aliquot_tag": "ALQ_397c870c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.RNA-Seq.S20_L005_R2.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 5510419498 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 3a99719b-9806-4c7f-8fbb-7ca27b3c509b 1b22f2a2e0a507f77367d618ec727d29 {"aliquot_tag": "ALQ_397c870c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.RNA-Seq.transcriptome.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.transcriptome.gdc_realn.bam 13310109132 BAM transcriptome harmonized CPTAC3 533651bd-51d7-4319-8477-898167bc01de b7a3009e91d05aeafc49a8fd422a91ba {"aliquot_tag": "ALQ_397c870c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.WGS.N C3L-04844 HNSCC WGS blood_normal CPT0248360002 CPT0248360002.WholeGenome.RP-1303.bam 66940859292 BAM submitted_aligned CPTAC3 ad0ffde8-f5f0-4538-a713-02908329b98a e0b8f69a747a6be52fab7973441299c1 {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04844.WGS.N.hg38 C3L-04844 HNSCC WGS blood_normal CPT0248360002 161b063d-d8ab-4135-aad8-d40fc65b7a2c_wgs_gdc_realn.bam 98908625191 BAM harmonized CPTAC3 910211a0-2824-4eff-bfe5-94088ea3cec4 02ab2561e2b621a6a8c37f3b006df0ca {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04844.WGS.T C3L-04844 HNSCC WGS tumor CPT0248330006 CPT0248330006.WholeGenome.RP-1303.bam 71495044177 BAM submitted_aligned CPTAC3 cfe92973-dacb-434c-ae0a-fae867d8bf68 c10f0f29e6b6f301dff3efa49da8dcb1 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.WGS.T.hg38 C3L-04844 HNSCC WGS tumor CPT0248330006 1303ac4b-aff0-4982-a3ba-8c792a57db03_wgs_gdc_realn.bam 105376839083 BAM harmonized CPTAC3 4a848f93-6b9d-49e6-94d7-bccf2554d728 8070e49c5e910f0f249a0270a3431aac {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.WXS.N C3L-04844 HNSCC WXS blood_normal CPT0248360002 CPT0248360002.WholeExome.RP-1303.bam 25030966918 BAM submitted_aligned CPTAC3 0040babd-c709-416d-84c8-5fb7764ce7bc 623edcead9a6b8154e852e848cff9a1b {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04844.WXS.N.hg38 C3L-04844 HNSCC WXS blood_normal CPT0248360002 161b063d-d8ab-4135-aad8-d40fc65b7a2c_wxs_gdc_realn.bam 34068454037 BAM harmonized CPTAC3 2b72ad7c-f5eb-4d4d-84dc-21d7da20105f e21ac2c45e8010857574d8fcd2079956 {"aliquot_tag": "ALQ_664ed1f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04844.WXS.T C3L-04844 HNSCC WXS tumor CPT0248330006 CPT0248330006.WholeExome.RP-1303.bam 23453192865 BAM submitted_aligned CPTAC3 fe04c506-6b7f-46df-8794-c2fe05ac61ca 575cb6bc4cb5d778b5c185306b4d6d95 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04844.WXS.T.hg38 C3L-04844 HNSCC WXS tumor CPT0248330006 1303ac4b-aff0-4982-a3ba-8c792a57db03_wxs_gdc_realn.bam 32437416289 BAM harmonized CPTAC3 bffd3d74-c0dc-4702-954f-f94a3da41c39 4c0a1215c4e006ecafc9c087ac1023f3 {"aliquot_tag": "ALQ_a9c39a9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.MethArray.Green.T C3L-04848 PDA Methylation_Array tumor CPT0248410007 203561620091_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 59b2b18a-5a6e-4a99-8eb1-3738de1c1513 71cbc03171855911593ad9bd54acb2fb {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.MethArray.Red.T C3L-04848 PDA Methylation_Array tumor CPT0248410007 203561620091_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 c949fa1f-723b-410f-bef5-469dffaa187e 42cb2c9e310e5ed530610766d0864128 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.miRNA-Seq.S32_L004_R1.T C3L-04848 PDA miRNA-Seq tumor CPT0248410010 190813_UNC32-K00270_0196_AH5MCWBBXY_TTAGGC_S32_L004_R1_001.unaln.bam 274553753 BAM S32_L004_R1 submitted_unaligned CPTAC3 43902004-3c77-4930-b075-0b6ba0c2819e 8b5c687c3b29755ab7240bad7b433407 {"aliquot_tag": "ALQ_3e7e6d31", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.miRNA-Seq.T.hg38 C3L-04848 PDA miRNA-Seq tumor CPT0248410010 9c67645b-7aa7-4ac9-a27e-de76bd6efc1f_mirnaseq_gdc_realn.bam 309366108 BAM harmonized CPTAC3 aa24d00b-2681-4765-9aee-2efb715b162e 551f8323915b5a4bdbfe611704e2f08e {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.RNA-Seq.chimeric.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.chimeric.gdc_realn.bam 225981709 BAM chimeric harmonized CPTAC3 1e0ab33a-3860-4ddb-a974-38b14fc7dfda 8f880451d87f1aa234766eefae0945fd {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.RNA-Seq.genomic.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.genomic.gdc_realn.bam 14027444354 BAM genomic harmonized CPTAC3 cef11416-0142-42a0-8744-1c6ebdd43af9 8c21efb66b12c9ba1e691c8226d19c45 {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.RNA-Seq.S33_L008_R1.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R1_001.fastq.gz 5465136410 FASTQ S33_L008_R1 submitted_unaligned CPTAC3 c4c2a1e1-dc6a-4438-84dc-c69b56ab3cbe ff68d0309a37e5e898a83a17e9d99b79 {"aliquot_tag": "ALQ_3e7e6d31", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.RNA-Seq.S33_L008_R2.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R2_001.fastq.gz 5588271010 FASTQ S33_L008_R2 submitted_unaligned CPTAC3 ee7e05a9-2134-40f8-9aa5-53fa23fc2ef3 da35269271c061501965ff50165fed8b {"aliquot_tag": "ALQ_3e7e6d31", "sample": "S33", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.RNA-Seq.transcriptome.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.transcriptome.gdc_realn.bam 11536542743 BAM transcriptome harmonized CPTAC3 94b456db-eb70-4b0c-a75e-85abd7c0370a a4a5e4e328fdbea949522eacbd577187 {"aliquot_tag": "ALQ_3e7e6d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.Targeted.T C3L-04848 PDA Targeted_Sequencing tumor CPT0248410007 CPT0248410007.CustomSelection.RP-1303.PDO-18786.bam 5039641210 BAM submitted_aligned CPTAC3 75cb9ef1-744a-4562-84a8-d17d6676f4a2 39d23a4ed29bd744da10c972ab9afb59 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.Targeted.T.hg38 C3L-04848 PDA Targeted_Sequencing tumor CPT0248410007 4d3b3837-9e79-472a-addf-9f37a7e0deeb_targetedsequencing_gdc_realn.bam 7295885657 BAM harmonized CPTAC3 2f2045a7-cab6-4535-ae12-a2ab7c96d572 c6034c624e3e07adb366e6d2c9fe9a67 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.WGS.N C3L-04848 PDA WGS blood_normal CPT0248450002 CPT0248450002.WholeGenome.RP-1303.bam 58748260177 BAM submitted_aligned CPTAC3 f7aa7ac7-a1dd-4d72-88d2-a254064d15c7 4f09c26bd0d28f1782bfe6869e129d1d {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04848.WGS.N.hg38 C3L-04848 PDA WGS blood_normal CPT0248450002 1b6a186d-ab81-4f64-9195-de05919416c5_wgs_gdc_realn.bam 87670539885 BAM harmonized CPTAC3 9af855cd-317f-4fc4-b229-f24227fce90f 0ab566d89e6c988cdf063514c5095220 {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04848.WGS.T C3L-04848 PDA WGS tumor CPT0248410007 CPT0248410007.WholeGenome.RP-1303.bam 66961518368 BAM submitted_aligned CPTAC3 ce239504-3820-4ce3-a40d-517cc57c1ad6 6745da026121e3f01fcea488db9b0b15 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.WGS.T.hg38 C3L-04848 PDA WGS tumor CPT0248410007 4d3b3837-9e79-472a-addf-9f37a7e0deeb_wgs_gdc_realn.bam 95933291618 BAM harmonized CPTAC3 e606f1b4-42de-4cdd-9c07-68c710282420 200b97b0828a94db76ae222ed9bd9397 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.WXS.N C3L-04848 PDA WXS blood_normal CPT0248450002 CPT0248450002.WholeExome.RP-1303.bam 24608798007 BAM submitted_aligned CPTAC3 2e9b9269-2e18-49f9-9ce8-c9e53d57a968 67bf97d416e0ebcbb72a8e126794bf98 {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04848.WXS.N.hg38 C3L-04848 PDA WXS blood_normal CPT0248450002 1b6a186d-ab81-4f64-9195-de05919416c5_wxs_gdc_realn.bam 33886130558 BAM harmonized CPTAC3 10fbded9-2f0a-4fbb-82d8-2e529947d74d f08b1f3a5be580ef7d87f373dc4f62f6 {"aliquot_tag": "ALQ_3ceb9b9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04848.WXS.T C3L-04848 PDA WXS tumor CPT0248410007 CPT0248410007.WholeExome.RP-1303.bam 45729993027 BAM submitted_aligned CPTAC3 c847de01-ab0e-4ecb-95ac-bb68b9829dc1 acf0cfb8ba2be476a6b1a7bcb9527eb9 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04848.WXS.T.hg38 C3L-04848 PDA WXS tumor CPT0248410007 4d3b3837-9e79-472a-addf-9f37a7e0deeb_wxs_gdc_realn.bam 64656654276 BAM harmonized CPTAC3 17dd08c9-cba7-489c-bf03-08ca54793c6c e7cab8cf1e229e8dc41adff000633387 {"aliquot_tag": "ALQ_b901c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.MethArray.Green.T C3L-04849 HNSCC Methylation_Array tumor CPT0248520006 203271740111_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 adbe175d-cf8b-4210-8dea-b61473eee470 f80f5a38313cf8464069e4352330f5e5 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.MethArray.Red.T C3L-04849 HNSCC Methylation_Array tumor CPT0248520006 203271740111_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 eeb0a369-a062-426d-ba5d-267da4b88ae8 46c47d90afcb87ecbda81fce231ccccb {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.miRNA-Seq.S45_L007_R1.T C3L-04849 HNSCC miRNA-Seq tumor CPT0248520009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L007_R1_001.unaln.bam 166507573 BAM S45_L007_R1 submitted_unaligned CPTAC3 6fb44401-917f-4026-871f-085b5b86fd79 2fd14da0ea2b4223a9b89d44e7617d76 {"aliquot_tag": "ALQ_d2454da1", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.miRNA-Seq.T.hg38 C3L-04849 HNSCC miRNA-Seq tumor CPT0248520009 ef929482-6acb-45aa-8561-4988dbea1fe8_mirnaseq_gdc_realn.bam 187534696 BAM harmonized CPTAC3 de1cd91b-c98f-4fd9-8d0e-ef185501a4f3 beda049bcff84b8cffdbfd628d2f320e {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.chimeric.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.chimeric.gdc_realn.bam 30188762 BAM chimeric harmonized CPTAC3 e0b6407e-e383-482e-800c-a6494c9ffa47 305e9d2fae677f0ea3e00f745602d2f1 {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.chimeric.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.chimeric.gdc_realn.bam 13527124 BAM chimeric harmonized CPTAC3 213b9b52-a13c-4bfa-923e-e7c6343574bf 6532d8a17aa8ad339097139c0c5262b5 {"aliquot_tag": "ALQ_f40f0a23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.genomic.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.genomic.gdc_realn.bam 9212222282 BAM genomic harmonized CPTAC3 28f81636-4e46-4c5e-9088-db04e34b64ce 6b26d9e8fa2ed9cb4a6eb220e6d30387 {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.genomic.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.genomic.gdc_realn.bam 4065327610 BAM genomic harmonized CPTAC3 a9cab4c8-fecc-4e6d-a0e9-5516cd4eec4a a5bff3c6f594de3c63fa54e2f2a9d914 {"aliquot_tag": "ALQ_f40f0a23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.S23_L006_R1.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R1_001.fastq.gz 4296837003 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 1477efe0-e758-4814-9202-918d9456d63c ea2302e08ccae3d4154df27f18e1ce13 {"aliquot_tag": "ALQ_d2454da1", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.S23_L006_R2.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R2_001.fastq.gz 4922773030 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 0739385d-e93f-4da7-89d1-8d0ed8d74071 2220a4ec37c0d699004b590ea47e7fe0 {"aliquot_tag": "ALQ_d2454da1", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.S65_R1.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R1_001.fastq.gz 1648171727 FASTQ S65_R1 submitted_unaligned CPTAC3 34ac1a8a-6177-4064-b7aa-75875511e6bb 325f4981a05da56b7d80814e7e8d60eb {"aliquot_tag": "ALQ_f40f0a23", "sample": "S65", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.S65_R2.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R2_001.fastq.gz 1805612075 FASTQ S65_R2 submitted_unaligned CPTAC3 a0f945ea-cd4d-4071-8b46-cbcd65dd52d7 4152cb84729ddcde56311ddb0147c13e {"aliquot_tag": "ALQ_f40f0a23", "sample": "S65", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.transcriptome.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.transcriptome.gdc_realn.bam 12688041222 BAM transcriptome harmonized CPTAC3 2ae99f51-06e5-4483-ae45-03b076547278 b93d5ce02080231a3727d1f69f804cb0 {"aliquot_tag": "ALQ_d2454da1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.RNA-Seq.transcriptome.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.transcriptome.gdc_realn.bam 2176541295 BAM transcriptome harmonized CPTAC3 3ca4d944-ac88-4c38-ac94-658e86358ecf a1a700669890db5f84ac443093abe7b5 {"aliquot_tag": "ALQ_f40f0a23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.WGS.N C3L-04849 HNSCC WGS blood_normal CPT0248540002 CPT0248540002.WholeGenome.RP-1303.bam 74762683950 BAM submitted_aligned CPTAC3 e349ea49-7cfc-4176-9c3e-5cd208ff7154 684312c493971a6ce6a7dce8cc7aadab {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04849.WGS.N.hg38 C3L-04849 HNSCC WGS blood_normal CPT0248540002 0d55ab95-104a-4c9f-bb3e-db6ec1ccc1dc_wgs_gdc_realn.bam 108508363635 BAM harmonized CPTAC3 914419b2-d11f-4f3e-9fc1-6bc5baeecefe 43e1d7e66a50a984ade2a62c5a150075 {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04849.WGS.T C3L-04849 HNSCC WGS tumor CPT0248520006 CPT0248520006.WholeGenome.RP-1303.bam 58831635028 BAM submitted_aligned CPTAC3 5b66bd63-cdc4-45fb-b632-b45bcc883f69 d8b5568754fd83cbeb4ed53b2355e8f7 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.WGS.T.hg38 C3L-04849 HNSCC WGS tumor CPT0248520006 30383780-fec1-44e6-90a3-ef9c68d6ff62_wgs_gdc_realn.bam 85682682298 BAM harmonized CPTAC3 a6498926-c298-4bc8-bfca-450dc0eb891a a42a1ab21005d8d9e5b3c3d40fee4154 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.WXS.N C3L-04849 HNSCC WXS blood_normal CPT0248540002 CPT0248540002.WholeExome.RP-1303.bam 22744368936 BAM submitted_aligned CPTAC3 6c9acd6d-82a9-4a4b-9d98-b59aede4aed8 5223677c2129ca7b51b09fbb2aa3d1f6 {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04849.WXS.N.hg38 C3L-04849 HNSCC WXS blood_normal CPT0248540002 0d55ab95-104a-4c9f-bb3e-db6ec1ccc1dc_wxs_gdc_realn.bam 30881296043 BAM harmonized CPTAC3 3744bc44-9084-45da-b7c7-2e7828543253 fe7d6261fd5f21a77777db93826f19e7 {"aliquot_tag": "ALQ_cad76189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04849.WXS.T C3L-04849 HNSCC WXS tumor CPT0248520006 CPT0248520006.WholeExome.RP-1303.bam 27405595855 BAM submitted_aligned CPTAC3 c52819fa-7cd0-4595-9374-9514d954bccc 67589ee826ece6a0e3da431420b332d3 {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04849.WXS.T.hg38 C3L-04849 HNSCC WXS tumor CPT0248520006 30383780-fec1-44e6-90a3-ef9c68d6ff62_wxs_gdc_realn.bam 37082418849 BAM harmonized CPTAC3 c7aaa9a3-ba8b-46b8-9920-e0705df5e08b 56bfb7420cf9b89c1c00876baf2997dd {"aliquot_tag": "ALQ_42fa5030", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.MethArray.Green.T C3L-04853 PDA Methylation_Array tumor CPT0248590007 203561620040_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4a442826-7472-43d2-8334-fa2ec540706c 75e963f9cb68ebc3d64551628d2397ad {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.MethArray.Red.T C3L-04853 PDA Methylation_Array tumor CPT0248590007 203561620040_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 aec562be-400c-4604-b456-1302bee009c4 236e241ce0d92e17594194e272957a80 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.miRNA-Seq.S28_L003_R1.T C3L-04853 PDA miRNA-Seq tumor CPT0248590014 190813_UNC32-K00270_0196_AH5MCWBBXY_TAATCG_S28_L003_R1_001.unaln.bam 268137016 BAM S28_L003_R1 submitted_unaligned CPTAC3 c03edc80-eb0e-417f-9c74-af4c2eb4e647 68c08f1c4ad3e45ea404d0b06d1ede74 {"aliquot_tag": "ALQ_c23f314c", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.miRNA-Seq.T.hg38 C3L-04853 PDA miRNA-Seq tumor CPT0248590014 46eab201-0f73-4464-9739-5620e92e5e05_mirnaseq_gdc_realn.bam 301461258 BAM harmonized CPTAC3 6276085d-68b3-4cb0-b4d4-e79967a5934d a7d5d0c2eb41d16e016f71a03a46a2e6 {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.RNA-Seq.chimeric.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.chimeric.gdc_realn.bam 33082938 BAM chimeric harmonized CPTAC3 a06ac415-de69-4400-a2d7-b66c922a4454 ca15bddc5d1683ce5aaac9524ace5c61 {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.genomic.gdc_realn.bam 8945283527 BAM genomic harmonized CPTAC3 b15b88de-7cde-4646-b3f8-80f77b77da0c decbc759091e805b602c4024bfec0c5a {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.RNA-Seq.S20_L005_R1.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R1_001.fastq.gz 4212126039 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 eb075015-1db4-4ac0-b1e9-b44fcf3026f9 0b31c616dde5cc051a99cda4e6edcbe7 {"aliquot_tag": "ALQ_c23f314c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.RNA-Seq.S20_L005_R2.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R2_001.fastq.gz 4349159879 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 b447e253-da71-4eca-8d57-bbfbc0d80095 dd28a2d91ee4763f145c2898878d1294 {"aliquot_tag": "ALQ_c23f314c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.RNA-Seq.transcriptome.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.transcriptome.gdc_realn.bam 11848205357 BAM transcriptome harmonized CPTAC3 98c29263-cbdb-4b22-962d-f765e68c743d bf90d80aa4386b2947756c05c219f237 {"aliquot_tag": "ALQ_c23f314c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.WGS.N C3L-04853 PDA WGS blood_normal CPT0248630002 CPT0248630002.WholeGenome.RP-1303.bam 76911837341 BAM submitted_aligned CPTAC3 c17a8761-2d9b-46e8-a57a-ed13aa858641 fb74c218a3e6622670214dba165c428d {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04853.WGS.N.hg38 C3L-04853 PDA WGS blood_normal CPT0248630002 bade3320-65ef-4e7b-82af-e3a0f2a88a55_wgs_gdc_realn.bam 113456877658 BAM harmonized CPTAC3 048bd256-f280-4b1b-96f6-c3c55614fa35 66e3f5e24485b7a337d0cd1f5d542f77 {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04853.WGS.T C3L-04853 PDA WGS tumor CPT0248590007 CPT0248590007.WholeGenome.RP-1303.PDO-18613.bam 122195170831 BAM submitted_aligned CPTAC3 ff16a800-1444-4676-adbc-d24c74aa30cc 1c1b43dc67a5e7df58dc1b3eec573a60 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.WGS.T.hg38 C3L-04853 PDA WGS tumor CPT0248590007 e37b44f0-ad8b-4afd-b48b-67cc920c40cf_wgs_gdc_realn.bam 178397735894 BAM harmonized CPTAC3 b55e752a-e1d0-4ac8-8d6d-c28b1ee96967 15c1a778480f53f22bb00714f97de968 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.WXS.N C3L-04853 PDA WXS blood_normal CPT0248630002 CPT0248630002.WholeExome.RP-1303.bam 38841189666 BAM submitted_aligned CPTAC3 4c6e5991-5deb-4c9e-af73-d222982c343d ccc675972d06729bf29654f40bea4f55 {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04853.WXS.N.hg38 C3L-04853 PDA WXS blood_normal CPT0248630002 bade3320-65ef-4e7b-82af-e3a0f2a88a55_wxs_gdc_realn.bam 53219857139 BAM harmonized CPTAC3 e3a0b7fe-90dd-4b1a-9003-385c4c89e2b1 42b6ddaae5e1ad1c3ec069c9f75fa347 {"aliquot_tag": "ALQ_fe63cf37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3L-04853.WXS.T C3L-04853 PDA WXS tumor CPT0248590007 CPT0248590007.WholeExome.RP-1303.bam 23614864966 BAM submitted_aligned CPTAC3 652bb21c-ced9-46fe-b597-4792844c1a08 93706d05ef251fb839fd161207f34669 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04853.WXS.T.hg38 C3L-04853 PDA WXS tumor CPT0248590007 e37b44f0-ad8b-4afd-b48b-67cc920c40cf_wxs_gdc_realn.bam 32034799026 BAM harmonized CPTAC3 20d82c66-380d-4984-8ee1-a5c5b8d34867 66792b11ee9914b88f40c6e66b832248 {"aliquot_tag": "ALQ_422d51b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-04854.MethArray.Green.A C3L-04854 LSCC Methylation_Array tissue_normal CPT0289170006 204367490151_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 6b55ff23-676f-4ab5-9562-ce28749fdd10 e280cddf564b746cb4f49c8bb1665761 {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.MethArray.Green.T C3L-04854 LSCC Methylation_Array tumor CPT0289110007 204372030070_R05C01_Grn.idat 13677904 IDAT Green NA CPTAC3 ec37335c-ba8f-4892-b093-e93aeb699b9f 14f22aa632f0b4a4cbc7812dd1c3b184 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.MethArray.Red.A C3L-04854 LSCC Methylation_Array tissue_normal CPT0289170006 204367490151_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 0812e217-aa0e-4004-aae1-35a95bdc9b13 9fd562434a496db14c28e13b2f7c584c {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.MethArray.Red.T C3L-04854 LSCC Methylation_Array tumor CPT0289110007 204372030070_R05C01_Red.idat 13677904 IDAT Red NA CPTAC3 aecaf259-ee6a-4062-a125-5c4c0c44e978 5dbdd2f57ab8ef98aeb8ada38fa57458 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.miRNA-Seq.A.hg38 C3L-04854 LSCC miRNA-Seq tissue_normal CPT0289170009 89f35920-847b-4909-90fc-a1f7c160e93b_mirnaseq_gdc_realn.bam 186654989 BAM harmonized CPTAC3 db87d560-cdc5-48dc-bbf8-b64617a751e9 ab29d4a244ff83ad137ce25b3aa1fa86 {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.miRNA-Seq.S21_L006_R1.T C3L-04854 LSCC miRNA-Seq tumor CPT0289110010 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L006_R1_001.unaln.bam 206767089 BAM S21_L006_R1 submitted_unaligned CPTAC3 118327e9-ff5c-47c9-a0ca-98b91e75522e abb15b0eb11e19d384b775d7557942dc {"aliquot_tag": "ALQ_9f6be279", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.miRNA-Seq.S27_L006_R1.A C3L-04854 LSCC miRNA-Seq tissue_normal CPT0289170009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATTCCT_S27_L006_R1_001.unaln.bam 164233246 BAM S27_L006_R1 submitted_unaligned CPTAC3 1a6394b8-50ba-4ce2-a2e3-d4daff47e7af 867861623cbdd892fbd0b28dedb1eb13 {"aliquot_tag": "ALQ_70ec9e3c", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.miRNA-Seq.T.hg38 C3L-04854 LSCC miRNA-Seq tumor CPT0289110010 a8301e68-62f5-42b0-8341-500158c05709_mirnaseq_gdc_realn.bam 227836886 BAM harmonized CPTAC3 68c3a257-3fc8-4f4e-836b-917de6e58879 695f9659a6cb830ad63e1e618cd480b8 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.RNA-Seq.chimeric.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.chimeric.gdc_realn.bam 32235044 BAM chimeric harmonized CPTAC3 dba17d1a-8ba2-491e-bfbf-6ba9fc770067 90bbd14eea83278de51d4983470eceb0 {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.RNA-Seq.chimeric.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.chimeric.gdc_realn.bam 56932370 BAM chimeric harmonized CPTAC3 28bf046e-4e7a-4357-9b8d-966e899fa7b2 0a3e4c35c03eb33c191149583fb50c33 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.RNA-Seq.genomic.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.genomic.gdc_realn.bam 8738337425 BAM genomic harmonized CPTAC3 890b8b0c-59f9-4d68-852e-c15b8edf8242 710a7920d505147ba6506d6980470855 {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.RNA-Seq.genomic.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.genomic.gdc_realn.bam 7450621065 BAM genomic harmonized CPTAC3 61246977-36d9-438d-8420-38b5af605ce9 e6f4d059b5b0ee391ef6ebeda13685b7 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.RNA-Seq.S10_L003_R1.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 3975190285 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 e210dc35-2884-413e-bf8b-e12fd56ba168 c60a4e62bb8b150c8aaea353f6096edb {"aliquot_tag": "ALQ_70ec9e3c", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.RNA-Seq.S10_L003_R2.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 4833262411 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 45b60f43-be80-4b02-a2cf-edcac84968c4 e91ce44002f569984bab5d48c91982ac {"aliquot_tag": "ALQ_70ec9e3c", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.RNA-Seq.S5_L002_R1.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R1_001.fastq.gz 3631461374 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 f6dedc7f-4441-4178-b55f-33b8c3fa5d3c 92753ed5456798ff2af1d16062eae30c {"aliquot_tag": "ALQ_9f6be279", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.RNA-Seq.S5_L002_R2.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R2_001.fastq.gz 3882433863 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 edbb4e5b-328b-4b64-86be-375330e674b2 f878dbef818e5fd9c3208c54cbd5f0ef {"aliquot_tag": "ALQ_9f6be279", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.RNA-Seq.transcriptome.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.transcriptome.gdc_realn.bam 9408570265 BAM transcriptome harmonized CPTAC3 b55fc703-e183-49f4-86f6-ef34a135429a 62a08c2378b9c9d063e0e4a146acab2c {"aliquot_tag": "ALQ_70ec9e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.RNA-Seq.transcriptome.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.transcriptome.gdc_realn.bam 10324545444 BAM transcriptome harmonized CPTAC3 60c84eb0-b43a-4078-9a77-d2352f4d2b3d c8ad7fc1781279e097002f7b674ac540 {"aliquot_tag": "ALQ_9f6be279", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.WGS.N C3L-04854 LSCC WGS blood_normal CPT0289270002 CPT0289270002.WholeGenome.RP-2158.bam 21471712355 BAM submitted_aligned CPTAC3 8fd6041b-d9aa-4c0c-9a42-b324dd126928 dc0d2145665b3eca46ae8dd5b7b4e083 {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04854.WGS.N.hg38 C3L-04854 LSCC WGS blood_normal CPT0289270002 d6b4852d-f75b-437d-9a33-41f25cad0437_wgs_gdc_realn.bam 63989641478 BAM harmonized CPTAC3 4e87e15b-8d04-47e2-a208-34ad0ecedaed ace79db7e563705380fea35dffe19c20 {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04854.WGS.T C3L-04854 LSCC WGS tumor CPT0289110007 CPT0289110007.WholeGenome.RP-2158.bam 26573114416 BAM submitted_aligned CPTAC3 3b05623a-f6f5-414e-a24f-69e4673d0f80 dbaea88b7ce683d70b9639b8c18a18dc {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.WGS.T.hg38 C3L-04854 LSCC WGS tumor CPT0289110007 e5c108a5-8b09-4dd6-9273-e5da4f818bf7_wgs_gdc_realn.bam 79050662634 BAM harmonized CPTAC3 8724bd37-e8e2-4f2f-b8e9-ef1912d56040 6bda9fbcefe5fb80429ce48bbcb055f8 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.WXS.A C3L-04854 LSCC WXS tissue_normal CPT0289170006 CPT0289170006.WholeExome.RP-1303.bam 23690888225 BAM submitted_aligned CPTAC3 a3a27570-5661-417c-ab92-4d3c14981786 359c80946a3bb98b00247ccca057d13c {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.WXS.A.hg38 C3L-04854 LSCC WXS tissue_normal CPT0289170006 d0a51ed0-023e-4cb9-98b6-b3e9d8506e56_wxs_gdc_realn.bam 31628931831 BAM harmonized CPTAC3 973beea9-9f9e-4347-ab4d-cec59f0c339a 1ffd4d08f65c3e02c6592a783ba30adb {"aliquot_tag": "ALQ_e05383ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04854.WXS.N C3L-04854 LSCC WXS blood_normal CPT0289270002 CPT0289270002.WholeExome.RP-1303.bam 29328801530 BAM submitted_aligned CPTAC3 c4c7123f-a7cd-4f73-8748-bcb9d7a8514c ae675666fb12cdc5566003c2b8b4521d {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04854.WXS.N.hg38 C3L-04854 LSCC WXS blood_normal CPT0289270002 d6b4852d-f75b-437d-9a33-41f25cad0437_wxs_gdc_realn.bam 40191864113 BAM harmonized CPTAC3 57ccf1be-8feb-4992-90ba-f98d83de8cef 7ba86561852c74ce88f374b979979ba6 {"aliquot_tag": "ALQ_61aa351a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04854.WXS.T C3L-04854 LSCC WXS tumor CPT0289110007 CPT0289110007.WholeExome.RP-1303.bam 18756010392 BAM submitted_aligned CPTAC3 8bb58c6a-a3d3-4ee1-b412-95cde0ac0a92 dc729e5f3bfbd0349e7beb06d8c0e342 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04854.WXS.T.hg38 C3L-04854 LSCC WXS tumor CPT0289110007 e5c108a5-8b09-4dd6-9273-e5da4f818bf7_wxs_gdc_realn.bam 25966154756 BAM harmonized CPTAC3 390887a6-da2a-44f1-819b-7e99aaf481f9 e562ec6a28ad6f1c0adb144e6cf47070 {"aliquot_tag": "ALQ_1814469b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.MethArray.Green.A C3L-04856 LSCC Methylation_Array tissue_normal CPT0289420006 204372030164_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f4b0058f-7c6e-4fa9-98b7-f851b413c4c9 1bb00a16cf4d7cd0a51a64399c13e000 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04856.MethArray.Green.T C3L-04856 LSCC Methylation_Array tumor CPT0289330006 204372030011_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 d274d45b-abf3-4910-b93d-d9bd1eb3f98c 1695947026472ade545d0835715d9ddd {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.MethArray.Red.A C3L-04856 LSCC Methylation_Array tissue_normal CPT0289420006 204372030164_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 523100fc-f66b-449e-acd2-f7e3859d91e8 0af499cd20970b11e629b92772dd3558 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04856.MethArray.Red.T C3L-04856 LSCC Methylation_Array tumor CPT0289330006 204372030011_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 a417653b-cd5d-4a0c-a818-5e2588f57466 14c4f606b1e3e47d19694a175c65d232 {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.miRNA-Seq.S22_L006_R1.T C3L-04856 LSCC miRNA-Seq tumor CPT0289330009 200224_UNC31-K00269_0267_AHC722BBXY_CGTACG_S22_L006_R1_001.unaln.bam 163739169 BAM S22_L006_R1 submitted_unaligned CPTAC3 efee3a28-4d65-4e74-96b9-21e26cd127ed 46c119dc81545e48c679dae2353f659e {"aliquot_tag": "ALQ_c8a499f7", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.miRNA-Seq.T.hg38 C3L-04856 LSCC miRNA-Seq tumor CPT0289330009 fad7449c-b011-455d-b9e2-b9e9d574a013_mirnaseq_gdc_realn.bam 179281313 BAM harmonized CPTAC3 9032c90a-56e2-4cc5-9842-00c46b88da37 72a9edfcc04dd277827d7e2c9a76a728 {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.RNA-Seq.chimeric.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.chimeric.gdc_realn.bam 47201994 BAM chimeric harmonized CPTAC3 90a5f1e8-7915-4877-800d-e68d3746c30a ab7ed9f634470740bd6586c5134ecbfb {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.RNA-Seq.genomic.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.genomic.gdc_realn.bam 7861630886 BAM genomic harmonized CPTAC3 4f54d8f4-b16d-41ad-ab9c-0117f0b49b5c 308483727a408945bd59f47c340e7ed7 {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.RNA-Seq.S6_L002_R1.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R1_001.fastq.gz 3782200705 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 9f9f631e-d684-4940-88d5-2e80f0feac26 58944e11bd5eb5479a3300e42dad7ebe {"aliquot_tag": "ALQ_c8a499f7", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.RNA-Seq.S6_L002_R2.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R2_001.fastq.gz 3990363868 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 ae42bf00-7b1c-4d7d-95eb-bf93b4d1a727 157a153208caf15e47d974da669f1e01 {"aliquot_tag": "ALQ_c8a499f7", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.RNA-Seq.transcriptome.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.transcriptome.gdc_realn.bam 8869230389 BAM transcriptome harmonized CPTAC3 0ec489da-8b1b-4f50-879c-a9af84284ff4 5f20e2b0cacfbcfddbf1f40fc129f57d {"aliquot_tag": "ALQ_c8a499f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.WGS.N C3L-04856 LSCC WGS blood_normal CPT0289530002 CPT0289530002.WholeGenome.RP-2158.bam 25005609704 BAM submitted_aligned CPTAC3 d41c4029-eb6d-41d2-a618-08cbbaa1111d 716e3f51bee1f6324276b305a87c588f {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04856.WGS.N.hg38 C3L-04856 LSCC WGS blood_normal CPT0289530002 6aef6afc-a1f6-4f73-978f-39455316c95a_wgs_gdc_realn.bam 73268514213 BAM harmonized CPTAC3 7cda4212-99fa-42df-937b-7eb1e7f90ad3 28813f0abe7169d5789ce204712bc0c8 {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04856.WGS.T C3L-04856 LSCC WGS tumor CPT0289330006 CPT0289330006.WholeGenome.RP-2158.bam 25366672311 BAM submitted_aligned CPTAC3 cac3d6d7-8dad-43ee-b596-bd3098f022ab a6624dbee473cb543459876601eac0fc {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.WGS.T.hg38 C3L-04856 LSCC WGS tumor CPT0289330006 efa93229-0fa2-44fb-8ff0-71219ba65905_wgs_gdc_realn.bam 74056184684 BAM harmonized CPTAC3 910050cb-db5c-462d-83df-055da02b27a4 4ae868b2b788c00b86525b6dd25ae27e {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.WXS.A C3L-04856 LSCC WXS tissue_normal CPT0289420006 CPT0289420006.WholeExome.RP-1303.bam 22425950194 BAM submitted_aligned CPTAC3 cf0b8a54-81a7-4124-9ad2-3c19d59899ef 1cc0185b8e268a420a209e65fe6b4c11 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04856.WXS.A.hg38 C3L-04856 LSCC WXS tissue_normal CPT0289420006 feb43bc8-51fc-4309-8281-3c7b2dc42ad9_wxs_gdc_realn.bam 30602145463 BAM harmonized CPTAC3 b86619ab-5263-4f8c-b3c5-19a17635df0c 9c515b302ee5c8e5d46115cff30765d8 {"aliquot_tag": "ALQ_787e9d6e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04856.WXS.N C3L-04856 LSCC WXS blood_normal CPT0289530002 CPT0289530002.WholeExome.RP-1303.bam 20472371739 BAM submitted_aligned CPTAC3 cd99199b-d8e6-453c-8d3b-60048b35d7cf 019b253466beef75af2aaa4a3d4c8f60 {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04856.WXS.N.hg38 C3L-04856 LSCC WXS blood_normal CPT0289530002 6aef6afc-a1f6-4f73-978f-39455316c95a_wxs_gdc_realn.bam 27623198221 BAM harmonized CPTAC3 613f6785-6688-4179-8ac7-42e7ac35e143 1cd89a6c2db9c85d5720cf0bcc1514f9 {"aliquot_tag": "ALQ_892fa362", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04856.WXS.T C3L-04856 LSCC WXS tumor CPT0289330006 CPT0289330006.WholeExome.RP-1303.bam 23213915949 BAM submitted_aligned CPTAC3 329e4d21-54cf-40e4-82e4-c17b18f08fc4 1a15e43c2d266897b5d917f3e1e49fd8 {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04856.WXS.T.hg38 C3L-04856 LSCC WXS tumor CPT0289330006 efa93229-0fa2-44fb-8ff0-71219ba65905_wxs_gdc_realn.bam 31605958614 BAM harmonized CPTAC3 d899d02d-c03d-4684-9e9f-0315fa30638d be3553e605b3c5129a508043846a9715 {"aliquot_tag": "ALQ_581b8466", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.MethArray.Green.A C3L-04861 LSCC Methylation_Array tissue_normal CPT0289600006 204372030015_R08C01_Grn.idat 13677905 IDAT Green NA CPTAC3 63f1057c-e7c8-4718-af64-f4f4cffd33e1 baba16d22cf5a837dc3cc5341b175714 {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.MethArray.Green.T C3L-04861 LSCC Methylation_Array tumor CPT0289560006 204367470127_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 16ad53c3-1fd0-4dc1-acd3-0592b7c08650 e94412dc153d4d1a168f4618bc011cd8 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.MethArray.Red.A C3L-04861 LSCC Methylation_Array tissue_normal CPT0289600006 204372030015_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 909b8915-b483-431a-9533-9f5d64fba92f 42a2de2a6e1b46e9a199eb3a9b5775b5 {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.MethArray.Red.T C3L-04861 LSCC Methylation_Array tumor CPT0289560006 204367470127_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 cc62b838-a265-45cb-8cbc-90827a2d07ba 1b486122fa59f6d26b44e0376f409d63 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.miRNA-Seq.A.hg38 C3L-04861 LSCC miRNA-Seq tissue_normal CPT0289600009 3cb84c11-8a0a-41e5-b48c-12f7b52d2090_mirnaseq_gdc_realn.bam 211138254 BAM harmonized CPTAC3 b537707b-8c8c-4229-9b42-8158fa6051a2 eafc16e5dc28d95971544e96e46b7345 {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.miRNA-Seq.S23_L006_R1.T C3L-04861 LSCC miRNA-Seq tumor CPT0289560009 200224_UNC31-K00269_0267_AHC722BBXY_GAGTGG_S23_L006_R1_001.unaln.bam 221384567 BAM S23_L006_R1 submitted_unaligned CPTAC3 ee37b7d7-4671-4821-8af8-f3d82d44b75c e51e102d79a0d134792a2b2a7dac2407 {"aliquot_tag": "ALQ_d61df59a", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.miRNA-Seq.S28_L006_R1.A C3L-04861 LSCC miRNA-Seq tissue_normal CPT0289600009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAAAAG_S28_L006_R1_001.unaln.bam 192533018 BAM S28_L006_R1 submitted_unaligned CPTAC3 1d068a4b-e9dd-461e-a738-a0dd8024e6e5 df66f78ed00140d78c75073af0ed75e7 {"aliquot_tag": "ALQ_dfc97294", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.miRNA-Seq.T.hg38 C3L-04861 LSCC miRNA-Seq tumor CPT0289560009 0518d91d-2768-49a4-b339-76e2b83bcf49_mirnaseq_gdc_realn.bam 248559750 BAM harmonized CPTAC3 300fabe3-599e-4e41-9474-88a23f44dad2 2b3412877b91faa6256d02c75391ceb7 {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.RNA-Seq.chimeric.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.chimeric.gdc_realn.bam 30194602 BAM chimeric harmonized CPTAC3 c31d582b-2aec-43aa-bfd8-cf3e78f7a1a8 6bddedc60085cc8ddb8c3e691cf23902 {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.RNA-Seq.chimeric.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.chimeric.gdc_realn.bam 51094141 BAM chimeric harmonized CPTAC3 68cb1593-90fd-47ad-85d8-30f6c1710a94 25cb7ec5c2bbbc671d6b1edd72539f6a {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.RNA-Seq.genomic.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.genomic.gdc_realn.bam 9464112658 BAM genomic harmonized CPTAC3 1a0b5923-38eb-4145-b147-634ff8f0e6af 5a5328c1943ecd5d35d1fece867cdb0a {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.RNA-Seq.genomic.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.genomic.gdc_realn.bam 7826236685 BAM genomic harmonized CPTAC3 31ea4ec5-dfba-47be-8da7-ad3fab8c0a00 7b50b7591324ff70e0bf3a3dedda0672 {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.RNA-Seq.S12_L003_R1.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 4056010431 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 e383fa02-0d44-4d97-a7ca-a5f047102b98 93661a0bcae87dba473af0a9bf1d9f30 {"aliquot_tag": "ALQ_dfc97294", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.RNA-Seq.S12_L003_R2.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 5075923519 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 ecc97835-799a-456c-9901-244f0947c7eb 3f25e75ed5361b4d842728be1581b087 {"aliquot_tag": "ALQ_dfc97294", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.RNA-Seq.S7_L002_R1.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R1_001.fastq.gz 3796378318 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 4740154b-84b2-4e0b-89ba-a8acf8a35938 e2235773bf574fe1adcc8a5973402622 {"aliquot_tag": "ALQ_d61df59a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.RNA-Seq.S7_L002_R2.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R2_001.fastq.gz 4044369499 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 3753c93c-35c0-43a3-b8b7-6d8a7a8ab028 5b11a1b70af90e32aaf849ca08aa64ec {"aliquot_tag": "ALQ_d61df59a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.RNA-Seq.transcriptome.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.transcriptome.gdc_realn.bam 10556649114 BAM transcriptome harmonized CPTAC3 d0f65683-f372-47a7-8194-062ff3d24843 76f595c1c585eb8333f4fc88bd15ad47 {"aliquot_tag": "ALQ_dfc97294", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.RNA-Seq.transcriptome.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.transcriptome.gdc_realn.bam 12337923939 BAM transcriptome harmonized CPTAC3 8a0b4f45-c652-49a3-afea-4ec4aec03c15 65256f6333996b9ed28af5b47b2da0c5 {"aliquot_tag": "ALQ_d61df59a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.WGS.N C3L-04861 LSCC WGS blood_normal CPT0289710002 CPT0289710002.WholeGenome.RP-2158.bam 29698919285 BAM submitted_aligned CPTAC3 9aa41222-d684-4b66-943f-d0fd3ffc3bea df9c00f331129cccb664535c9bf52122 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04861.WGS.N.hg38 C3L-04861 LSCC WGS blood_normal CPT0289710002 587a77b0-d172-490c-991d-1c6fdcb4c093_wgs_gdc_realn.bam 88702414451 BAM harmonized CPTAC3 189d7b19-780a-4bcc-ab76-aa8fc677b27b bdce1bb876b05f2023241d13afcd2484 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04861.WGS.T C3L-04861 LSCC WGS tumor CPT0289560006 CPT0289560006.WholeGenome.RP-2158.bam 25594847520 BAM submitted_aligned CPTAC3 eabdf2c8-2b33-4fbd-b0ea-d8009e308a5a 7382caf9f788977f6092f892de968cfd {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.WGS.T.hg38 C3L-04861 LSCC WGS tumor CPT0289560006 a70a2f42-2ae8-48b7-bb9e-db2dfe15c8c4_wgs_gdc_realn.bam 74453335894 BAM harmonized CPTAC3 fa24097d-6c63-4b2e-8c7c-aeee3b72050b 89f7c66bd90ef19ca7106fc30e40d2a0 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.WXS.A C3L-04861 LSCC WXS tissue_normal CPT0289600006 CPT0289600006.WholeExome.RP-1303.bam 23272794108 BAM submitted_aligned CPTAC3 f2360740-03ae-4f37-9f1e-11d4e0d8c637 58a5ea16d803d72b1a26a6a3f1ca32eb {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.WXS.A.hg38 C3L-04861 LSCC WXS tissue_normal CPT0289600006 58f678b8-aa2f-46e5-89dc-4157983eecdb_wxs_gdc_realn.bam 32667561717 BAM harmonized CPTAC3 58fc0da6-091b-4cd9-8951-10490ecf430b 7124a10e55468bba8e2f46a80c6ad6ed {"aliquot_tag": "ALQ_4f766f05", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04861.WXS.N C3L-04861 LSCC WXS blood_normal CPT0289710002 CPT0289710002.WholeExome.RP-1303.bam 22124582605 BAM submitted_aligned CPTAC3 5e00461d-6514-4ecc-a086-0d23f0a835fc 74f0e3fcc35363629ffe9f955f58e3d6 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04861.WXS.N.hg38 C3L-04861 LSCC WXS blood_normal CPT0289710002 587a77b0-d172-490c-991d-1c6fdcb4c093_wxs_gdc_realn.bam 30420957349 BAM harmonized CPTAC3 c8a222b1-e796-4b55-bdbc-0bffaab03f4b 11efa03711f2906a143262d1dfc77617 {"aliquot_tag": "ALQ_be275109", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04861.WXS.T C3L-04861 LSCC WXS tumor CPT0289560006 CPT0289560006.WholeExome.RP-1303.bam 51283462008 BAM submitted_aligned CPTAC3 c0292300-627b-47fa-b345-d5917aad7901 5369bc1b8829dfe787be7703936817c9 {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04861.WXS.T.hg38 C3L-04861 LSCC WXS tumor CPT0289560006 a70a2f42-2ae8-48b7-bb9e-db2dfe15c8c4_wxs_gdc_realn.bam 72106346821 BAM harmonized CPTAC3 74f96a42-a935-4011-9d1b-f85b0836be95 a009ed00e30001b360d411e4dc118a0a {"aliquot_tag": "ALQ_46a2e80b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.MethArray.Green.A C3L-04866 LSCC Methylation_Array tissue_normal CPT0255430006 204372030014_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 5c7f9cfb-3277-4224-9da4-1ca638f619ad 1ef69c3451320013a59365805d8baf85 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.MethArray.Green.T C3L-04866 LSCC Methylation_Array tumor CPT0255420006 204367490043_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e63e12b6-7efc-4637-acba-c77fd4ef5cba d73e40d2d1257cdd5b5fd5e062b0a909 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.MethArray.Red.A C3L-04866 LSCC Methylation_Array tissue_normal CPT0255430006 204372030014_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 4668ffdc-523f-46e1-bfd9-40a3307111c6 51a6ad373eed4d21d2de50820f24ce46 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.MethArray.Red.T C3L-04866 LSCC Methylation_Array tumor CPT0255420006 204367490043_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 f7b7ae72-a175-4708-a3c6-045d03a9bf11 e053c703e750b0407ff7ad772ea386c7 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.miRNA-Seq.A.hg38 C3L-04866 LSCC miRNA-Seq tissue_normal CPT0255430009 3b9e7be4-230a-4520-82c3-18578f83600f_mirnaseq_gdc_realn.bam 315603629 BAM harmonized CPTAC3 8d8a3cbc-fec8-4f1c-9810-15c31e7f9d4d 8f03ec188dbce0f3060e4b6c07ad3ee6 {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.miRNA-Seq.S14_L007_R1.A C3L-04866 LSCC miRNA-Seq tissue_normal CPT0255430009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GCCAAT_S14_L007_R1_001.unaln.bam 283938365 BAM S14_L007_R1 submitted_unaligned CPTAC3 ec164068-73da-46d7-a9b8-c29bd6da8a71 dcb1219d0ac51641088f0d7461b68533 {"aliquot_tag": "ALQ_8904d6ea", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.miRNA-Seq.S42_L007_R1.T C3L-04866 LSCC miRNA-Seq tumor CPT0255420009 200224_UNC31-K00269_0267_AHC722BBXY_TAATCG_S42_L007_R1_001.unaln.bam 223534305 BAM S42_L007_R1 submitted_unaligned CPTAC3 289c7cfb-7486-45ce-96a2-5d8ea64bf3c4 972acd4739d7db17e74483319a50723c {"aliquot_tag": "ALQ_b464ff5a", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.miRNA-Seq.T.hg38 C3L-04866 LSCC miRNA-Seq tumor CPT0255420009 4c804429-afc8-4c00-bb4e-ede228b64183_mirnaseq_gdc_realn.bam 248946602 BAM harmonized CPTAC3 9e19915a-8e6b-444e-97a7-8b544fa2fc2d eb15aa9dd138d6d3b3c65ff1251c49ce {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.RNA-Seq.chimeric.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.chimeric.gdc_realn.bam 89293528 BAM chimeric harmonized CPTAC3 7b974317-a643-4569-8e4a-e3b37b7bfe96 842571d56f628955cc14e931d7d7b18f {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.RNA-Seq.chimeric.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.chimeric.gdc_realn.bam 31104220 BAM chimeric harmonized CPTAC3 d621c9df-0bdd-4314-8616-0fdb7900d39f 61f8d84719132cd28d1a7d632440d56f {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.RNA-Seq.genomic.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.genomic.gdc_realn.bam 7679577844 BAM genomic harmonized CPTAC3 1385e0a9-459a-4ca4-8f92-7a76ad97ceb2 83762129b58fc64743f40fadaa76fc1b {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.RNA-Seq.genomic.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.genomic.gdc_realn.bam 7931975771 BAM genomic harmonized CPTAC3 f8a32cea-38e3-4d01-ad79-aada97780c58 9a268b33a9689863cc579ce70fcdce54 {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.RNA-Seq.S10_L003_R1.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3879397988 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 6bde87a0-821b-4c0d-8346-f9ec89d3ee6e 80775610a6d3669eb25a4a5f0be6d990 {"aliquot_tag": "ALQ_b464ff5a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.RNA-Seq.S10_L003_R2.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4125265787 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 d07eefdf-b5cf-4d00-a0d5-a808bfe25fb8 177b539a139fec558cf58b6ac7def804 {"aliquot_tag": "ALQ_b464ff5a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.RNA-Seq.S8_L002_R1.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R1_001.fastq.gz 3747384627 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 20067dc4-1b7a-433b-8261-91bf2ba952fe fad0bf47fdd6147b3b89ad27de582ee6 {"aliquot_tag": "ALQ_8904d6ea", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.RNA-Seq.S8_L002_R2.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R2_001.fastq.gz 4197482715 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 3f986b3d-e2bc-42b9-a91e-7c3969a6177f d8a08371866c1665ec5373a2a8a114ef {"aliquot_tag": "ALQ_8904d6ea", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.RNA-Seq.transcriptome.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.transcriptome.gdc_realn.bam 9424415884 BAM transcriptome harmonized CPTAC3 49b80667-238e-48da-828f-34435468c882 831f6a1ce1fce6fa75d50a6ace322a83 {"aliquot_tag": "ALQ_8904d6ea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.RNA-Seq.transcriptome.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.transcriptome.gdc_realn.bam 10318638609 BAM transcriptome harmonized CPTAC3 5bf9a606-5857-46de-8799-cb10da5850fc 25388e6255234661173bf89b53cf5300 {"aliquot_tag": "ALQ_b464ff5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.WGS.N C3L-04866 LSCC WGS blood_normal CPT0269240002 CPT0269240002.WholeGenome.RP-2158.bam 26984518666 BAM submitted_aligned CPTAC3 2b508c6c-a82b-4f70-8ed9-13b2b879c134 4eff9bf9b7241f3d4f784b418cf0cd3b {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04866.WGS.N.hg38 C3L-04866 LSCC WGS blood_normal CPT0269240002 70bb1e58-a17c-4f61-b263-94f490da2e9c_wgs_gdc_realn.bam 79600797309 BAM harmonized CPTAC3 f11a5195-8153-43a1-ba5b-681000d65a1c 12604376025bda452257fca560a2d44b {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04866.WGS.T C3L-04866 LSCC WGS tumor CPT0255420006 CPT0255420006.WholeGenome.RP-2158.bam 23735728134 BAM submitted_aligned CPTAC3 c9ed18a4-a511-40d9-8298-875409a6d59c 374b84550f2fb631f25882bace0185e6 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.WGS.T.hg38 C3L-04866 LSCC WGS tumor CPT0255420006 9bf9f218-3b59-4645-8b74-292e13639580_wgs_gdc_realn.bam 67519279374 BAM harmonized CPTAC3 56041f11-39a5-4bad-b4c8-76cdbe79669f fbe2fa37253805fa3c66cef5043fc7f4 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.WXS.A C3L-04866 LSCC WXS tissue_normal CPT0255430006 CPT0255430006.WholeExome.RP-1303.bam 23365117645 BAM submitted_aligned CPTAC3 036ce600-c131-4ad3-8126-ebe4d05f7c75 38d1156231ce6de0e7894f151fe2cf93 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.WXS.A.hg38 C3L-04866 LSCC WXS tissue_normal CPT0255430006 2a2a78e1-9176-445d-b7ee-3d64e447f2f7_wxs_gdc_realn.bam 31648118470 BAM harmonized CPTAC3 9aee0ebf-0489-4b79-b3ed-747fdc8c5ab5 1845184a0db11097c433c50dffe35905 {"aliquot_tag": "ALQ_19bbcb7b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04866.WXS.N C3L-04866 LSCC WXS blood_normal CPT0269240002 CPT0269240002.WholeExome.RP-1303.bam 22476834793 BAM submitted_aligned CPTAC3 75894906-be52-4c8d-b1b6-d3a66f1bc0cb 197728f1696ddd62209278a610fa1b2e {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04866.WXS.N.hg38 C3L-04866 LSCC WXS blood_normal CPT0269240002 70bb1e58-a17c-4f61-b263-94f490da2e9c_wxs_gdc_realn.bam 30038333441 BAM harmonized CPTAC3 5ba04105-6184-4797-b365-49604344df4d 2cf98d006a63a4bac2031507bfdd2d24 {"aliquot_tag": "ALQ_33805df8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04866.WXS.T C3L-04866 LSCC WXS tumor CPT0255420006 CPT0255420006.WholeExome.RP-1303.bam 26538230408 BAM submitted_aligned CPTAC3 53874e57-a335-46a3-8671-91486bf009ae 1cbe5daceca839beff8b123199836d15 {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04866.WXS.T.hg38 C3L-04866 LSCC WXS tumor CPT0255420006 9bf9f218-3b59-4645-8b74-292e13639580_wxs_gdc_realn.bam 36022078736 BAM harmonized CPTAC3 c613e327-ccef-48c7-bedc-0019ba76e48f 498df45aab9b27b085e5b77de52e92fe {"aliquot_tag": "ALQ_24dbe2cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.MethArray.Green.A C3L-04868 LSCC Methylation_Array tissue_normal CPT0252960009 204372030087_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0ed412ef-4d86-4ed7-9c43-634aaf1efa9f e44e6e718ad62444d2d301a01aa9230e {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.MethArray.Green.T C3L-04868 LSCC Methylation_Array tumor CPT0252940006 204367470127_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 d75357bd-58ea-4ff9-9876-b01879ae480f 073b7231bda119a35e9f9986574e4fbb {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.MethArray.Red.A C3L-04868 LSCC Methylation_Array tissue_normal CPT0252960009 204372030087_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 1f6f12e7-2763-4bb9-a9f8-193e11ffcbc5 ba9352701dc23b2ed833abdb988a4dec {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.MethArray.Red.T C3L-04868 LSCC Methylation_Array tumor CPT0252940006 204367470127_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 44c8d7f4-e656-444b-a342-8d795d7d57fa e6192b64d8f3a98b47c7d3aef9746519 {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.miRNA-Seq.A.hg38 C3L-04868 LSCC miRNA-Seq tissue_normal CPT0252960006 d6d02fe9-3a3d-4b62-9aaa-80a844da95e6_mirnaseq_gdc_realn.bam 254167565 BAM harmonized CPTAC3 335b0781-fda3-487c-bb57-9226bba9e7b3 e6b8a3f51cafb3b9178b8c715e91240b {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.miRNA-Seq.S27_L007_R1.T C3L-04868 LSCC miRNA-Seq tumor CPT0252940009 200224_UNC31-K00269_0267_AHC722BBXY_ATTCCT_S27_L007_R1_001.unaln.bam 161639240 BAM S27_L007_R1 submitted_unaligned CPTAC3 7823198e-6569-4c0f-ac30-ae521fd6123e d591e14b843b0059ec03ee1d18433d51 {"aliquot_tag": "ALQ_421d27aa", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.miRNA-Seq.S41_L006_R1.A C3L-04868 LSCC miRNA-Seq tissue_normal CPT0252960006 200513_UNC31-K00269_0278_BHH7Y7BBXY_GACGAC_S41_L006_R1_001.unaln.bam 229147650 BAM S41_L006_R1 submitted_unaligned CPTAC3 7bc9357c-d17b-4034-8e11-2b8e39d42f8a 0fb6949f1589194ba723723c14b244be {"aliquot_tag": "ALQ_a862695b", "sample": "S41", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.miRNA-Seq.T.hg38 C3L-04868 LSCC miRNA-Seq tumor CPT0252940009 7654ed03-dff3-467b-890a-0cebb7fc8d59_mirnaseq_gdc_realn.bam 177255435 BAM harmonized CPTAC3 e34edbcc-2412-4df0-b80e-5e125f746d02 d77ad88dd1a1c2596e373d68a2c02bfc {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.RNA-Seq.chimeric.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.chimeric.gdc_realn.bam 39185371 BAM chimeric harmonized CPTAC3 960b3f47-ada2-45f3-985d-7cd0b1887672 6bb7cf6cbae45bb1db53ec10ed135d2b {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.RNA-Seq.chimeric.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.chimeric.gdc_realn.bam 40273929 BAM chimeric harmonized CPTAC3 3483cef9-abff-4744-bee3-901006e0c79b 325535c31b4873e75b9659260b43aac1 {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.RNA-Seq.genomic.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.genomic.gdc_realn.bam 9681721150 BAM genomic harmonized CPTAC3 fe96a236-c72e-48b8-9268-61e86c8de8b7 e39644e2e174a0bd24080f8d02d33680 {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.RNA-Seq.genomic.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.genomic.gdc_realn.bam 7564997586 BAM genomic harmonized CPTAC3 509432e6-0777-4a50-95bb-13f494926f75 50ff5867e95f143bc2274c9b22741f46 {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.RNA-Seq.S11_L003_R1.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R1_001.fastq.gz 3691927643 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 ca162531-b8ee-4f2d-9e6b-1b62145949d4 e414b3abe16d769d1ef931d0b761b653 {"aliquot_tag": "ALQ_421d27aa", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.RNA-Seq.S11_L003_R2.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R2_001.fastq.gz 4102057523 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 ef34ca3b-b988-42ce-afb5-6c263eaf3e20 0cc17af699af383f132701cda1658ce0 {"aliquot_tag": "ALQ_421d27aa", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.RNA-Seq.S26_L007_R1.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R1_001.fastq.gz 4515297792 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 d631702e-a9e8-428f-94f6-af371554432e 415ee39c97237621ff3362fb36348a94 {"aliquot_tag": "ALQ_a862695b", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.RNA-Seq.S26_L007_R2.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R2_001.fastq.gz 5456454667 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 b3cb045f-cbee-4b2b-a2b7-b9240a36b6b5 ddb2b811332f65df3927e030ff3f55a6 {"aliquot_tag": "ALQ_a862695b", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.RNA-Seq.transcriptome.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.transcriptome.gdc_realn.bam 11564778033 BAM transcriptome harmonized CPTAC3 add2061d-b119-4a56-b726-076e84b42bb2 da256c6f7fe82046410adfc402405a33 {"aliquot_tag": "ALQ_a862695b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.RNA-Seq.transcriptome.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.transcriptome.gdc_realn.bam 9349751464 BAM transcriptome harmonized CPTAC3 5ff2c5ff-b652-4c0a-92ce-c4ec6219e4e7 88aed4350834f2cda7f17a5e83dc94fd {"aliquot_tag": "ALQ_421d27aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.WGS.N C3L-04868 LSCC WGS blood_normal CPT0253060002 CPT0253060002.WholeGenome.RP-2158.bam 23500774792 BAM submitted_aligned CPTAC3 9ca33398-5326-4ee7-9909-9a76de2d2683 37f9c2c350375dea3326b87fe1cb5cf2 {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04868.WGS.N.hg38 C3L-04868 LSCC WGS blood_normal CPT0253060002 391d5226-dbaa-4631-961b-cc74dfb50e18_wgs_gdc_realn.bam 69484426572 BAM harmonized CPTAC3 ddc24ca0-210e-492c-bd82-a8896da3c6a1 a24b10c816b908ae9b66b0c4af7c8754 {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04868.WGS.T C3L-04868 LSCC WGS tumor CPT0252940006 CPT0252940006.WholeGenome.RP-2158.bam 23172859578 BAM submitted_aligned CPTAC3 caec68e3-a988-41fe-8dc4-05c366488121 4614ff3a75f78d1ce1fd2e2b13a2b30d {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.WGS.T.hg38 C3L-04868 LSCC WGS tumor CPT0252940006 43603349-f8cc-43ba-b8ce-6c6662369372_wgs_gdc_realn.bam 67272381958 BAM harmonized CPTAC3 be8f3dad-edd3-4543-8f20-ed43e68d8186 b5de721ac27de353fc74726a9c07a6ae {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.WXS.A C3L-04868 LSCC WXS tissue_normal CPT0252960009 CPT0252960009.WholeExome.RP-1303.bam 18743101513 BAM submitted_aligned CPTAC3 69133439-edb8-4013-b444-d766796ce35c 14a64ca2e064684fb7048fc099df6843 {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.WXS.A.hg38 C3L-04868 LSCC WXS tissue_normal CPT0252960009 f787d0d4-1a25-4da9-ab7d-9c1c0628d612_wxs_gdc_realn.bam 25228950286 BAM harmonized CPTAC3 aa45e31c-eab1-4077-b34d-77a041abf1e1 0a55272f46420edaee0a5ca305509e65 {"aliquot_tag": "ALQ_38dd74ca", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04868.WXS.N C3L-04868 LSCC WXS blood_normal CPT0253060002 CPT0253060002.WholeExome.RP-1303.bam 24951127155 BAM submitted_aligned CPTAC3 2491ecfb-6336-4fa0-b5eb-581b588495d8 2d2b560698b551be71e14e1dd9d0a79f {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04868.WXS.N.hg38 C3L-04868 LSCC WXS blood_normal CPT0253060002 391d5226-dbaa-4631-961b-cc74dfb50e18_wxs_gdc_realn.bam 34464959688 BAM harmonized CPTAC3 a2400fed-591a-440c-bf4f-b81b0e1812f3 9cb7e3a9b8fa1fa7a5cddb3f4b9f09bf {"aliquot_tag": "ALQ_2e77f73e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04868.WXS.T C3L-04868 LSCC WXS tumor CPT0252940006 CPT0252940006.WholeExome.RP-1303.bam 33625447274 BAM submitted_aligned CPTAC3 30eddb31-76cc-4c0b-8056-b03330a09caf 6d1bb56b0ec5aa759a5560d88f93c425 {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04868.WXS.T.hg38 C3L-04868 LSCC WXS tumor CPT0252940006 43603349-f8cc-43ba-b8ce-6c6662369372_wxs_gdc_realn.bam 47266817828 BAM harmonized CPTAC3 9ee8ec6e-c9bb-4f78-a9f6-f59c6ed235bd 9ca78e5d4a995a9be67bd8e63014276d {"aliquot_tag": "ALQ_d2a23a3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.MethArray.Green.A C3L-04871 LSCC Methylation_Array tissue_normal CPT0269330006 204367470124_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0b4175c0-2ab7-49fb-a533-7024a82ef2b1 16733685c6ac610279effb19006b63c6 {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.MethArray.Green.T C3L-04871 LSCC Methylation_Array tumor CPT0269290006 204372030014_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 32751113-f246-4791-800e-c0caec030a00 a90e576d60cd31ebaba1d8fa51ed7db1 {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.MethArray.Red.A C3L-04871 LSCC Methylation_Array tissue_normal CPT0269330006 204367470124_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 ceef0ca1-63c8-476d-9997-7e8c0ba9151a 64426b4cd63b60f22d0fd9d935f7489e {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.MethArray.Red.T C3L-04871 LSCC Methylation_Array tumor CPT0269290006 204372030014_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 f563850b-462f-491b-8751-b39eed7af436 6803fe7126965b7fe21671854033385f {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.miRNA-Seq.A.hg38 C3L-04871 LSCC miRNA-Seq tissue_normal CPT0269330009 16ed3190-9dda-495c-9a6d-dc8a828f90cc_mirnaseq_gdc_realn.bam 230850515 BAM harmonized CPTAC3 b6000134-a5e8-4077-b0ec-b1cc2873261b b123983d7b9a6d7d8ea15f392c27c4fc {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.miRNA-Seq.S16_L006_R1.T C3L-04871 LSCC miRNA-Seq tumor CPT0269290009 200224_UNC31-K00269_0267_AHC722BBXY_CCGTCC_S16_L006_R1_001.unaln.bam 234950644 BAM S16_L006_R1 submitted_unaligned CPTAC3 34936c80-5618-4d8a-90d3-9b5f7bc41058 011ad2bcce7cf2d36eb8fbd22b0c86e2 {"aliquot_tag": "ALQ_5cc240c1", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.miRNA-Seq.S18_L007_R1.A C3L-04871 LSCC miRNA-Seq tissue_normal CPT0269330009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTCCGC_S18_L007_R1_001.unaln.bam 205922092 BAM S18_L007_R1 submitted_unaligned CPTAC3 7c17aea3-17e9-46a0-b752-a0567717d3a8 00f8c1f363b9eb0de447cfca7ed5a86b {"aliquot_tag": "ALQ_dd2e8bc5", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.miRNA-Seq.T.hg38 C3L-04871 LSCC miRNA-Seq tumor CPT0269290009 24271d4a-6e19-46f7-8245-4d6400a9d39f_mirnaseq_gdc_realn.bam 262124518 BAM harmonized CPTAC3 04f16660-d92f-412e-8527-c062f7de85b7 8eba84ab61d26e91d518c77fd21dbe5b {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.RNA-Seq.chimeric.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.chimeric.gdc_realn.bam 93425193 BAM chimeric harmonized CPTAC3 784ed70a-8ffd-4626-b41d-49c9bc15392c b502437dc6eda0f8802f8e6416b48dfd {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.RNA-Seq.chimeric.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.chimeric.gdc_realn.bam 67663833 BAM chimeric harmonized CPTAC3 187d6264-0ad9-4c9e-b5fa-2c14e82edfe2 fa3acf0bd7e9931aa89909588330b28d {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.RNA-Seq.genomic.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.genomic.gdc_realn.bam 7422995654 BAM genomic harmonized CPTAC3 c9eeb07d-9460-4170-b6dc-28ec26c570f2 59a075280f55cc1e14212da1b334ad80 {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.RNA-Seq.genomic.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.genomic.gdc_realn.bam 8334622161 BAM genomic harmonized CPTAC3 3b75a1ff-0bde-48d9-85d3-5e4646628ea3 b51227a8b5450ad4e706abcca7a13ebe {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.RNA-Seq.S19_L005_R1.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R1_001.fastq.gz 3538087308 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 b37be0c1-1600-4417-bd99-db6225ce1526 0ae263c0b027ddff20d1a343a0af83ef {"aliquot_tag": "ALQ_dd2e8bc5", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.RNA-Seq.S19_L005_R2.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R2_001.fastq.gz 4032901461 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 79e8deb7-9e77-452c-93ce-558f96c4c755 57e4c7cd03a0e317df5a7a7f71edaac0 {"aliquot_tag": "ALQ_dd2e8bc5", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.RNA-Seq.S32_L008_R1.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R1_001.fastq.gz 3857917556 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 bcc382c1-29b4-4989-918f-69976c6a71ad 584eb0bff9ea3bde553a0f5178e7b032 {"aliquot_tag": "ALQ_5cc240c1", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.RNA-Seq.S32_L008_R2.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R2_001.fastq.gz 4158031134 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 04cf2d38-a9fb-413a-b32a-15cfa33a2166 e9dddea653ff233157ff187040ab7887 {"aliquot_tag": "ALQ_5cc240c1", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.RNA-Seq.transcriptome.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.transcriptome.gdc_realn.bam 9778559892 BAM transcriptome harmonized CPTAC3 d5c9aee3-5c4f-434b-a7dc-940267eacdbf a7e10605412c9ce6d7a56ba4f7abd9dd {"aliquot_tag": "ALQ_dd2e8bc5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.RNA-Seq.transcriptome.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.transcriptome.gdc_realn.bam 9819944785 BAM transcriptome harmonized CPTAC3 3368553b-296b-4ee5-aca4-5a7eb0ed4680 7a7fc62308bde3e1dd6bc93d19d57748 {"aliquot_tag": "ALQ_5cc240c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.WGS.N C3L-04871 LSCC WGS blood_normal CPT0269420002 CPT0269420002.WholeGenome.RP-2158.bam 26218863830 BAM submitted_aligned CPTAC3 2045a7d4-81e4-4716-ad5f-831917e388a7 0ef8c627e8d0301044c7fac0eb346923 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04871.WGS.N.hg38 C3L-04871 LSCC WGS blood_normal CPT0269420002 a2db28ad-4a19-4289-bb64-24390da5be1e_wgs_gdc_realn.bam 78200378403 BAM harmonized CPTAC3 e78b9def-1b4a-4c79-a3bf-0408441713a6 d06ffc1eb9aebe047c60e033f3fa6784 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04871.WGS.T C3L-04871 LSCC WGS tumor CPT0269290006 CPT0269290006.WholeGenome.RP-2158.bam 28066513578 BAM submitted_aligned CPTAC3 35033de2-00a5-40ee-9d1e-032e90fe1014 e456c88ec73fa83624bc1d7e82dfe6cf {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.WGS.T.hg38 C3L-04871 LSCC WGS tumor CPT0269290006 066c9bba-638b-4ffe-85ff-363bfd12f2de_wgs_gdc_realn.bam 81095957935 BAM harmonized CPTAC3 002259e0-1438-474e-9b3b-ecda15bfd01f 662ca7fe7688bf537e13cfa3fdbcd040 {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.WXS.A C3L-04871 LSCC WXS tissue_normal CPT0269330006 CPT0269330006.WholeExome.RP-1303.bam 27343100608 BAM submitted_aligned CPTAC3 49c31e44-7568-4eba-928c-64735b4b4eb3 d4844c35a79aa281c908d5d154865768 {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.WXS.A.hg38 C3L-04871 LSCC WXS tissue_normal CPT0269330006 eb4c530d-fe39-45b4-8d47-7b5463b841c7_wxs_gdc_realn.bam 38465184294 BAM harmonized CPTAC3 659e8768-34ca-46fe-aef4-2c0b5a470837 9d002607a0e183ab91e6bbcbfbfe9c1d {"aliquot_tag": "ALQ_4d919654", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04871.WXS.N C3L-04871 LSCC WXS blood_normal CPT0269420002 CPT0269420002.WholeExome.RP-1303.bam 22611642099 BAM submitted_aligned CPTAC3 a4da1c12-7b9e-4db7-97df-d9cd1801ba8b 81aaaec6566852fabbcf47139c9bbba5 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04871.WXS.N.hg38 C3L-04871 LSCC WXS blood_normal CPT0269420002 a2db28ad-4a19-4289-bb64-24390da5be1e_wxs_gdc_realn.bam 30561016751 BAM harmonized CPTAC3 2260ee9b-9521-4067-b1f2-2ceb8fd3a191 5ce3f776016c57979e66a3dc08721e01 {"aliquot_tag": "ALQ_6a994b45", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04871.WXS.T C3L-04871 LSCC WXS tumor CPT0269290006 CPT0269290006.WholeExome.RP-1303.bam 41753232816 BAM submitted_aligned CPTAC3 4937d0aa-f7c1-4a39-8e5b-55bbc9cdd16b 7c1c91f26b280ab576c64cf68725fa7b {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04871.WXS.T.hg38 C3L-04871 LSCC WXS tumor CPT0269290006 066c9bba-638b-4ffe-85ff-363bfd12f2de_wxs_gdc_realn.bam 58924308316 BAM harmonized CPTAC3 d0010b69-1f37-4ce2-8758-6674057e9616 d291f2d4f13ac2d298919461c8585dba {"aliquot_tag": "ALQ_cc7d5d50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.MethArray.Green.A C3L-04872 LSCC Methylation_Array tissue_normal CPT0268240006 204372030076_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 f0a087f3-8ee0-46b7-ac33-1e46873d58fb a823f5f5d5df942f7e89b7a3cf513928 {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.MethArray.Green.T C3L-04872 LSCC Methylation_Array tumor CPT0268190006 204367490061_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e7e6ed24-c0c6-4a79-805d-059682bece04 eae61a4d4db264ef6db9dfa74033e089 {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.MethArray.Red.A C3L-04872 LSCC Methylation_Array tissue_normal CPT0268240006 204372030076_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 63419a6f-57ee-4f71-9deb-ab7a9bf0c2fc 2b2bbf474399e251cee9c4c0b6d919dd {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.MethArray.Red.T C3L-04872 LSCC Methylation_Array tumor CPT0268190006 204367490061_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 55328ff0-7e0c-4919-9b55-7c7cb8fe0142 c4c3b56ed7c4abda6e2692fff2b57b6e {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.miRNA-Seq.A.hg38 C3L-04872 LSCC miRNA-Seq tissue_normal CPT0268240009 c65cc1b1-fbd9-4ca9-82b6-ceb5e617158c_mirnaseq_gdc_realn.bam 249589107 BAM harmonized CPTAC3 313e161e-b66f-4b25-a4a4-d6fd4fb15fb8 59fcd8b260654e7027c3c45f719d950e {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.miRNA-Seq.S17_L007_R1.A C3L-04872 LSCC miRNA-Seq tissue_normal CPT0268240009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTAGAG_S17_L007_R1_001.unaln.bam 224440633 BAM S17_L007_R1 submitted_unaligned CPTAC3 501d0a5e-e285-471a-9c77-458a48142680 b3563494f3bdcc63f095032bc37d5a0e {"aliquot_tag": "ALQ_2258fc4", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.miRNA-Seq.S31_L008_R1.T C3L-04872 LSCC miRNA-Seq tumor CPT0268190009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACGAT_S31_L008_R1_001.unaln.bam 213095930 BAM S31_L008_R1 submitted_unaligned CPTAC3 2b967150-a242-4bd8-bcbf-dde773f68376 d111fc708b724e2ebc10b8a5de7210fe {"aliquot_tag": "ALQ_7c2139db", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.miRNA-Seq.T.hg38 C3L-04872 LSCC miRNA-Seq tumor CPT0268190009 7e501903-e1f7-4199-be84-95edea9c5a57_mirnaseq_gdc_realn.bam 237597097 BAM harmonized CPTAC3 977e92f0-0ee0-4272-b2a7-b306862a4129 7b361a2438dd52e8b2fab45a192b9da2 {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.RNA-Seq.chimeric.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.chimeric.gdc_realn.bam 80940088 BAM chimeric harmonized CPTAC3 94138104-2844-47bb-8d5c-ee6118a9f7ef 1b4f1dc602101c063b64bf81956a9748 {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.RNA-Seq.chimeric.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.chimeric.gdc_realn.bam 56909093 BAM chimeric harmonized CPTAC3 8c552d1f-e02c-4047-bde4-ceeec8c68454 4232be6f1d93870e81d191e261f7106e {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.RNA-Seq.genomic.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.genomic.gdc_realn.bam 8800210561 BAM genomic harmonized CPTAC3 90a57f05-3d23-4987-9cbb-72c601b985dc 5ce3e5ad211c17a7dc94ce451713c610 {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.RNA-Seq.genomic.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.genomic.gdc_realn.bam 7841615343 BAM genomic harmonized CPTAC3 cd7d2532-d65d-4d44-b66f-4392914bf905 a3a3af734721b8157b6cc5df7794e753 {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.RNA-Seq.S17_L005_R1.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R1_001.fastq.gz 4349949102 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 8655c5ea-5ef9-42e0-bee0-9731723f1c28 b17897a7868704dabfb9af33c1d6dd2c {"aliquot_tag": "ALQ_2258fc4", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.RNA-Seq.S17_L005_R2.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R2_001.fastq.gz 4947695883 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 a28cea4c-f0f3-407c-a8ed-34f29aae8a99 4126da6ba4133a155b16f5a857e8f280 {"aliquot_tag": "ALQ_2258fc4", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.RNA-Seq.S29_L008_R1.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R1_001.fastq.gz 3698420557 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 94f914c3-18e6-41d0-b4d8-35d7e99cddc9 8c15acd560b7c9773ebb3c8dcc9b1e4c {"aliquot_tag": "ALQ_7c2139db", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.RNA-Seq.S29_L008_R2.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R2_001.fastq.gz 4217739880 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 aca625af-fd49-4223-a531-7018beea2e58 606325e5950b21613123e0a2ca2abd97 {"aliquot_tag": "ALQ_7c2139db", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.RNA-Seq.transcriptome.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.transcriptome.gdc_realn.bam 11527771470 BAM transcriptome harmonized CPTAC3 ede1ef2a-c88b-469d-b061-5aaef5b04fc8 f4d0c6773fa6e4fb562f9158f104cf75 {"aliquot_tag": "ALQ_2258fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.RNA-Seq.transcriptome.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.transcriptome.gdc_realn.bam 8292623566 BAM transcriptome harmonized CPTAC3 6548a174-c5a2-4860-91d0-45c804a6dc2e 65b509073a8e8d57957ad04dba4e6aa9 {"aliquot_tag": "ALQ_7c2139db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.WGS.N C3L-04872 LSCC WGS blood_normal CPT0268330002 CPT0268330002.WholeGenome.RP-2158.bam 34651736800 BAM submitted_aligned CPTAC3 f73aff23-b6ee-462f-8f55-b95235fff974 50bb5a25030e3df47ef397d70caefbe5 {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04872.WGS.N.hg38 C3L-04872 LSCC WGS blood_normal CPT0268330002 684ec18f-3d8f-4bfd-88d9-264ebaf87fa4_wgs_gdc_realn.bam 105158711822 BAM harmonized CPTAC3 1833b881-3ebe-46be-adfe-bffa4185cddf 10625140854449396bab971776ade5e0 {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04872.WGS.T C3L-04872 LSCC WGS tumor CPT0268190006 CPT0268190006.WholeGenome.RP-2158.bam 24981323028 BAM submitted_aligned CPTAC3 4dbf0932-423f-4b0e-ad6a-0e7885f1e507 d4a679671e2a5526eb3688094fc9403f {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.WGS.T.hg38 C3L-04872 LSCC WGS tumor CPT0268190006 36c2492a-a296-4bff-9e6e-3e00aae2dc2b_wgs_gdc_realn.bam 76238037119 BAM harmonized CPTAC3 3e40b43b-5757-40d7-a5a2-02210f457a40 9c5f9b80eaf35b8362ae473ff7cba289 {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.WXS.A C3L-04872 LSCC WXS tissue_normal CPT0268240006 CPT0268240006.WholeExome.RP-1303.bam 39055575442 BAM submitted_aligned CPTAC3 1724591c-1dc7-4ebf-b7ce-12776f707fd1 c02781f978978717126752faf14a473a {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.WXS.A.hg38 C3L-04872 LSCC WXS tissue_normal CPT0268240006 6cf4be9b-1627-4610-8617-3c350647e1f5_wxs_gdc_realn.bam 53034742276 BAM harmonized CPTAC3 103d3259-8da9-4a15-9b63-e2cf1a7f0669 c083e08e8439f8944fda9b97612a7924 {"aliquot_tag": "ALQ_929a9255", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04872.WXS.N C3L-04872 LSCC WXS blood_normal CPT0268330002 CPT0268330002.WholeExome.RP-1303.bam 23255592628 BAM submitted_aligned CPTAC3 86fd29e2-d1be-4666-ab6a-4b73b590920b b4687deb492100cd984565593562ebcd {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04872.WXS.N.hg38 C3L-04872 LSCC WXS blood_normal CPT0268330002 684ec18f-3d8f-4bfd-88d9-264ebaf87fa4_wxs_gdc_realn.bam 31565336996 BAM harmonized CPTAC3 4c23007d-2c01-4fac-9a0c-3fe23f4a8d1b 45eb430a272992490fb5a61b3aea7a07 {"aliquot_tag": "ALQ_ec8b59f9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04872.WXS.T C3L-04872 LSCC WXS tumor CPT0268190006 CPT0268190006.WholeExome.RP-1303.bam 18196315726 BAM submitted_aligned CPTAC3 9862a218-91e0-4548-bbd2-744ac818d59a 6b1ea64fb5bada653fa6b23c638220ab {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04872.WXS.T.hg38 C3L-04872 LSCC WXS tumor CPT0268190006 36c2492a-a296-4bff-9e6e-3e00aae2dc2b_wxs_gdc_realn.bam 26936928324 BAM harmonized CPTAC3 cf37bf4f-2eec-48dc-8155-35444e372552 0fe23fff10071e5b6e9e02e41da763bf {"aliquot_tag": "ALQ_ec9e244a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.MethArray.Green.A C3L-04873 LSCC Methylation_Array tissue_normal CPT0267860006 204372030164_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 cbd5359b-759e-4c2f-be90-1169ddd10daa 403b6cd4c8615832ed25f867545e535a {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.MethArray.Green.T C3L-04873 LSCC Methylation_Array tumor CPT0267850006 204372030085_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 c41bb0d7-3b23-45b3-beaa-ed6f59b4a8ed 8637208cfaa59b5565cc51400829c0ee {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.MethArray.Red.A C3L-04873 LSCC Methylation_Array tissue_normal CPT0267860006 204372030164_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 b3cae102-a807-4535-91ed-d0d6666f8582 4fac9e0552c37f75b0c55d12de800a69 {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.MethArray.Red.T C3L-04873 LSCC Methylation_Array tumor CPT0267850006 204372030085_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 7bceb29c-ce0e-4a25-9471-a9b112629755 66e91793143b81fec70c10e690d0be5f {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.miRNA-Seq.A.hg38 C3L-04873 LSCC miRNA-Seq tissue_normal CPT0267860009 817185b0-cd61-48f5-ba54-f3717fa884ba_mirnaseq_gdc_realn.bam 243528811 BAM harmonized CPTAC3 da53d6bc-3f59-4518-8a4b-177b0a29823c 5c75b6789e87a2be0c8b0ccf89686c59 {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.miRNA-Seq.S14_L006_R1.T C3L-04873 LSCC miRNA-Seq tumor CPT0267850009 200224_UNC31-K00269_0267_AHC722BBXY_AGTTCC_S14_L006_R1_001.unaln.bam 199360917 BAM S14_L006_R1 submitted_unaligned CPTAC3 e31a13b4-02da-42cd-880b-f4149178dc5d c481f65fae8904d031e6b531c9794824 {"aliquot_tag": "ALQ_6896f5fb", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.miRNA-Seq.S6_L007_R1.A C3L-04873 LSCC miRNA-Seq tissue_normal CPT0267860009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATGTCA_S6_L007_R1_001.unaln.bam 215073873 BAM S6_L007_R1 submitted_unaligned CPTAC3 ccc64fd0-9119-4e84-b0b7-badc0fcc2091 839ec656db3796eda3e83373fde871f4 {"aliquot_tag": "ALQ_2f368f2b", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.miRNA-Seq.T.hg38 C3L-04873 LSCC miRNA-Seq tumor CPT0267850009 7a2c99b9-233b-4830-bdcd-657f3688c4d5_mirnaseq_gdc_realn.bam 224099379 BAM harmonized CPTAC3 3317d158-0494-455b-a093-71a591886ad3 16679dec31515c207e57a5e458ac198a {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.RNA-Seq.chimeric.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.chimeric.gdc_realn.bam 69985959 BAM chimeric harmonized CPTAC3 8ee47747-315c-4935-8326-88a620f0cf92 29c562d33429ba2f10f1645feb9b2df4 {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.RNA-Seq.chimeric.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.chimeric.gdc_realn.bam 72449084 BAM chimeric harmonized CPTAC3 1efd2c17-3a91-4984-9095-bdf0a3d642cb 5331e2adec7f8b5a9aac3b1abfb2abb1 {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.RNA-Seq.genomic.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.genomic.gdc_realn.bam 6770811622 BAM genomic harmonized CPTAC3 05636841-9d01-49e4-9092-7e199296571b 0129aa987d514ed511fb7e3cc08afc8e {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.RNA-Seq.genomic.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.genomic.gdc_realn.bam 8452007508 BAM genomic harmonized CPTAC3 3f342088-ae3a-4e5e-909a-412bba21bbab ab489d368fa80001431d33644cbf77b0 {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.RNA-Seq.S16_L004_R1.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R1_001.fastq.gz 3267021647 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 4f261355-af5a-4fc3-845b-deee97490d06 9c998163d8b3500a9a30e9deba5f9970 {"aliquot_tag": "ALQ_2f368f2b", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.RNA-Seq.S16_L004_R2.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R2_001.fastq.gz 3661427471 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 5bfe4050-1028-4139-9fa0-0de52e10513f 8e290353c7c553f20a3c4d1dc99d73cb {"aliquot_tag": "ALQ_2f368f2b", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.RNA-Seq.S30_L008_R1.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R1_001.fastq.gz 4118044352 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 20817190-6ba3-46e2-97b8-3524fb0f249d c62e59b11ec933fbab678c77f6fc7f3f {"aliquot_tag": "ALQ_6896f5fb", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.RNA-Seq.S30_L008_R2.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R2_001.fastq.gz 4391222005 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 a0f52148-128b-417a-bc26-eaff29f1ba80 c83c95266db04107e4e5eddf3da6bb96 {"aliquot_tag": "ALQ_6896f5fb", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.RNA-Seq.transcriptome.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.transcriptome.gdc_realn.bam 8142750344 BAM transcriptome harmonized CPTAC3 e408e527-6786-4eb0-9224-8ddec6dcc1d3 f8396a9c3a451ed751aa810be37948cb {"aliquot_tag": "ALQ_2f368f2b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.RNA-Seq.transcriptome.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.transcriptome.gdc_realn.bam 11069788448 BAM transcriptome harmonized CPTAC3 f6598c3b-c998-416f-ae22-b40c7ce88212 ddbe7d45d212129336e2e49318dbab5a {"aliquot_tag": "ALQ_6896f5fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.WGS.N C3L-04873 LSCC WGS blood_normal CPT0267970002 CPT0267970002.WholeGenome.RP-2158.bam 27770798027 BAM submitted_aligned CPTAC3 6e9b251f-aac4-4ca8-8aa2-94939f3944c9 398f0810d4e79f56d90037d662c34fb3 {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04873.WGS.N.hg38 C3L-04873 LSCC WGS blood_normal CPT0267970002 82f03f91-8421-4e4c-a257-2bde3ae9ec4a_wgs_gdc_realn.bam 83761394148 BAM harmonized CPTAC3 273c5dee-0424-4279-9eb2-fdd9b5b6d9ec 92b40d5aba4838c72b3d53d81b53c809 {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04873.WGS.T C3L-04873 LSCC WGS tumor CPT0267850006 CPT0267850006.WholeGenome.RP-2158.bam 23683876538 BAM submitted_aligned CPTAC3 2493af4b-02d6-401b-b65d-0e62639e0232 0f2f1db9acfa8bf04af271e65da06234 {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.WGS.T.hg38 C3L-04873 LSCC WGS tumor CPT0267850006 04f1ed3d-fb02-4257-ac35-bb8607019cce_wgs_gdc_realn.bam 70441640431 BAM harmonized CPTAC3 aff9f748-72c3-45fe-b67b-aac0fdcb92e4 8506b3a0ce05d0cedc1580d27f78577a {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.WXS.A C3L-04873 LSCC WXS tissue_normal CPT0267860006 CPT0267860006.WholeExome.RP-1303.bam 22379338179 BAM submitted_aligned CPTAC3 d8b3c54e-dd10-46a7-a4ee-b0e6f0a938c4 2180424896ab482d40d884950ac2f034 {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.WXS.A.hg38 C3L-04873 LSCC WXS tissue_normal CPT0267860006 fb8b317e-44e7-429b-9b48-a0d4852e9f08_wxs_gdc_realn.bam 31658760442 BAM harmonized CPTAC3 e729f7dc-a27d-4b2c-b9e8-75fae08789cc 6495482d91e832e5c8b9d36833fc2384 {"aliquot_tag": "ALQ_bf8992ba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04873.WXS.N C3L-04873 LSCC WXS blood_normal CPT0267970002 CPT0267970002.WholeExome.RP-1303.bam 18720837432 BAM submitted_aligned CPTAC3 facf7952-5290-4a3f-bb0c-fc860c54b8ab beeeb76c35b6ed4a83715802280933b8 {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04873.WXS.N.hg38 C3L-04873 LSCC WXS blood_normal CPT0267970002 82f03f91-8421-4e4c-a257-2bde3ae9ec4a_wxs_gdc_realn.bam 25285412565 BAM harmonized CPTAC3 fddf9a49-09c9-42c5-b6e1-f14d128e7749 48cca18f529723debd970094afe5b3cf {"aliquot_tag": "ALQ_4ed8acb6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04873.WXS.T C3L-04873 LSCC WXS tumor CPT0267850006 CPT0267850006.WholeExome.RP-1303.bam 23833247155 BAM submitted_aligned CPTAC3 d0b36001-fc8e-45bd-9d06-95da96158263 7d48afbf8d5e276613d9624140345e6c {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04873.WXS.T.hg38 C3L-04873 LSCC WXS tumor CPT0267850006 04f1ed3d-fb02-4257-ac35-bb8607019cce_wxs_gdc_realn.bam 32992811950 BAM harmonized CPTAC3 a78ce0ca-4c2a-46d1-96e1-2b4d2a1b7097 161062697a3425e6515c0ef0643c920b {"aliquot_tag": "ALQ_f829e86a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.MethArray.Green.A C3L-04874 LSCC Methylation_Array tissue_normal CPT0268060006 204367470124_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 3994e0ff-a8c7-4b6e-a1e4-69a81d2d9ca3 660ba2d08bcc5b918b430162877ffec5 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.MethArray.Green.T C3L-04874 LSCC Methylation_Array tumor CPT0268010006 204367460011_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 66f6f748-70d9-4830-ad0d-272294c2730b c1fbde6ffb6db48fb1206ff77e465240 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.MethArray.Red.A C3L-04874 LSCC Methylation_Array tissue_normal CPT0268060006 204367470124_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 ada4d209-2f1b-450d-aea0-e2d855df5c19 50cf7484e5411bb98294f76126b18828 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.MethArray.Red.T C3L-04874 LSCC Methylation_Array tumor CPT0268010006 204367460011_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 97f0fb00-8344-45bb-bead-69f4b60dc1f7 cdea31e0e857079d40218bd68b429068 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.miRNA-Seq.A.hg38 C3L-04874 LSCC miRNA-Seq tissue_normal CPT0268060009 f4176045-f3a0-411d-b198-72175e63b5ba_mirnaseq_gdc_realn.bam 228145568 BAM harmonized CPTAC3 9b2c4a53-a17e-40cd-8c8f-750e5bd944ea 558ad09dc1760b20b187aed69511551e {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.miRNA-Seq.S15_L006_R1.T C3L-04874 LSCC miRNA-Seq tumor CPT0268010009 200224_UNC31-K00269_0267_AHC722BBXY_ATGTCA_S15_L006_R1_001.unaln.bam 257877724 BAM S15_L006_R1 submitted_unaligned CPTAC3 a18a1b5d-245e-469d-951e-65f7c1bca04d ec123fc307a7869a3e6790518e955033 {"aliquot_tag": "ALQ_870da1bf", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.miRNA-Seq.S8_L007_R1.A C3L-04874 LSCC miRNA-Seq tissue_normal CPT0268060009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCGTCC_S8_L007_R1_001.unaln.bam 203423638 BAM S8_L007_R1 submitted_unaligned CPTAC3 8c9ce3a9-d399-4b3a-a415-e3e5b7c4a5d8 de078394ed671d57edbd7118a533811b {"aliquot_tag": "ALQ_352d7daf", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.miRNA-Seq.T.hg38 C3L-04874 LSCC miRNA-Seq tumor CPT0268010009 9de2d273-d6e7-47a0-a628-eb6bc9b3a2e0_mirnaseq_gdc_realn.bam 280343130 BAM harmonized CPTAC3 b978c3f3-4377-4420-ae18-cbb221ae8502 8142724d71d80f152e7e49b22899e4ac {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.RNA-Seq.chimeric.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.chimeric.gdc_realn.bam 59204199 BAM chimeric harmonized CPTAC3 f102d8a0-ba49-481c-af5a-231cf417aceb 902f88931d452e80b014b5701e2cc588 {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.RNA-Seq.chimeric.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.chimeric.gdc_realn.bam 72850474 BAM chimeric harmonized CPTAC3 0412ebac-894b-4952-b590-405ed8c3b6b5 c313932d452982a77274f399dd227b3c {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.RNA-Seq.genomic.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.genomic.gdc_realn.bam 9207473800 BAM genomic harmonized CPTAC3 d1765eea-b0d0-438a-92fb-0916ed616a4c 0c8cb26f34935ada85de6d1ff89d3a0e {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.RNA-Seq.genomic.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.genomic.gdc_realn.bam 7601625125 BAM genomic harmonized CPTAC3 6cc1f844-1abb-4bd1-b112-95d0c39a5b80 940d05920c94a4a8ee70c375f5017ec3 {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.RNA-Seq.S13_L004_R1.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R1_001.fastq.gz 4590335158 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 7742eec6-bdb8-4f41-8397-ef82eadf8e7f 1654e5b234ed531a733e6a75e8653c6e {"aliquot_tag": "ALQ_352d7daf", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.RNA-Seq.S13_L004_R2.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R2_001.fastq.gz 5111805431 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 3747b899-498f-45a5-8c6f-684299021505 c64c58b363303c763a4ca4b4fe9d6bb4 {"aliquot_tag": "ALQ_352d7daf", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.RNA-Seq.S31_L008_R1.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R1_001.fastq.gz 3696908014 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 88ca160f-a81f-4bef-9f80-13517f1e6b75 a8ce459b2c7aae68d8f87dc84ded8293 {"aliquot_tag": "ALQ_870da1bf", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.RNA-Seq.S31_L008_R2.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R2_001.fastq.gz 4002016917 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 1b6e6435-3038-41a9-9faf-683d6e37dbfe c2badd236e84c6b15149af5ae0387a05 {"aliquot_tag": "ALQ_870da1bf", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.RNA-Seq.transcriptome.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.transcriptome.gdc_realn.bam 11903306791 BAM transcriptome harmonized CPTAC3 477a74c8-1e82-4bc4-8f59-8493a776423f d579bd7cf132d63dc2784546f3b771b0 {"aliquot_tag": "ALQ_352d7daf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.RNA-Seq.transcriptome.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.transcriptome.gdc_realn.bam 9799554602 BAM transcriptome harmonized CPTAC3 654576c8-2da6-48bd-be77-a3b69be5278d cf4eb806172172f738b7a0d4a03f21ac {"aliquot_tag": "ALQ_870da1bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.WGS.N C3L-04874 LSCC WGS blood_normal CPT0268150002 CPT0268150002.WholeGenome.RP-2158.bam 26957184911 BAM submitted_aligned CPTAC3 ef812784-db07-40be-b8fa-0b8ff7d1dba9 b5a486deef8bfb32d1b10bab88a153b1 {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04874.WGS.N.hg38 C3L-04874 LSCC WGS blood_normal CPT0268150002 953cc737-9263-4e67-be03-67fe6d20bb08_wgs_gdc_realn.bam 83536921005 BAM harmonized CPTAC3 a3c24b09-97d6-4f8e-a53a-08976f7312a7 c773fa2917d68b7f602b34a05be6503a {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04874.WGS.T C3L-04874 LSCC WGS tumor CPT0268010006 CPT0268010006.WholeGenome.RP-2158.bam 26810039619 BAM submitted_aligned CPTAC3 cf1029b8-5e50-4b2d-98d9-33ff5d24745d 0632651113768137e8dac034e96b2300 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.WGS.T.hg38 C3L-04874 LSCC WGS tumor CPT0268010006 4d122972-e702-4224-9825-9d97013cac46_wgs_gdc_realn.bam 79090522046 BAM harmonized CPTAC3 09d88d3e-7e17-4371-b1f6-0f9627d89f4f 63a75d52421341a8027aacc5384d8e2e {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.WXS.A C3L-04874 LSCC WXS tissue_normal CPT0268060006 CPT0268060006.WholeExome.RP-1303.bam 25247341808 BAM submitted_aligned CPTAC3 064ebb6e-ab76-4a63-ab75-2dcab1676a33 b7989ba8441b6c5275020ef3ce6a9873 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.WXS.A.hg38 C3L-04874 LSCC WXS tissue_normal CPT0268060006 b31502a1-6c1c-4b3a-baa7-cefb398d1a27_wxs_gdc_realn.bam 34319914160 BAM harmonized CPTAC3 8b80a4ba-c29e-46e5-97ca-463908920510 b2dfb8820a1401abd94253ddeda070b0 {"aliquot_tag": "ALQ_a592603e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04874.WXS.N C3L-04874 LSCC WXS blood_normal CPT0268150002 CPT0268150002.WholeExome.RP-1303.bam 29016340716 BAM submitted_aligned CPTAC3 15c5c425-5dfc-4dbb-8afd-cfd33714274b fa26574e25c787f0ee162b897a1c0840 {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04874.WXS.N.hg38 C3L-04874 LSCC WXS blood_normal CPT0268150002 953cc737-9263-4e67-be03-67fe6d20bb08_wxs_gdc_realn.bam 40216174443 BAM harmonized CPTAC3 5eba3e46-a59f-478f-91e8-c400a5830e57 afae7927e53ac26ab77a1bcbdff2753e {"aliquot_tag": "ALQ_2e030d52", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04874.WXS.T C3L-04874 LSCC WXS tumor CPT0268010006 CPT0268010006.WholeExome.RP-1303.bam 22456291052 BAM submitted_aligned CPTAC3 5825af56-076b-4c97-a001-1d7c72f38a0d fb8339ac8e0e95f48764be3ba1b713aa {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04874.WXS.T.hg38 C3L-04874 LSCC WXS tumor CPT0268010006 4d122972-e702-4224-9825-9d97013cac46_wxs_gdc_realn.bam 30691005000 BAM harmonized CPTAC3 1dc9f1bc-7640-4843-89d2-b328c6ded443 94325e7c42e570216fac630e476b60e1 {"aliquot_tag": "ALQ_17b2bc2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.MethArray.Green.A C3L-04878 LSCC Methylation_Array tissue_normal CPT0255260006 204367460011_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ee099556-091f-4a33-85eb-b75137f3251b 411d048d377a7b3d653f724b62f76bf7 {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.MethArray.Green.T C3L-04878 LSCC Methylation_Array tumor CPT0255240006 204367490057_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 a3edd16a-62ad-4f2e-860b-c1acec059fd1 46ef716ea5bc08a8fbe802052d5d1e8f {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.MethArray.Red.A C3L-04878 LSCC Methylation_Array tissue_normal CPT0255260006 204367460011_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 c0a8ab19-6dbf-4b37-ae52-bd8625e50a4f 1a56388ee8cbac99cfcb2046fe77e4ae {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.MethArray.Red.T C3L-04878 LSCC Methylation_Array tumor CPT0255240006 204367490057_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 ec74d8db-dc59-4593-85c3-677473ee06d8 624b794928c5747742c47ad8acc2b98c {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.miRNA-Seq.A.hg38 C3L-04878 LSCC miRNA-Seq tissue_normal CPT0255260009 f47c07e7-6d7e-4c19-90c8-802b2d92c1c8_mirnaseq_gdc_realn.bam 279595817 BAM harmonized CPTAC3 f861d1d9-e571-4661-83f3-37ff53d7c8c5 49ab6ea70304ae84e2c377574c1133b8 {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.miRNA-Seq.S16_L007_R1.T C3L-04878 LSCC miRNA-Seq tumor CPT0255240009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGTAGC_S16_L007_R1_001.unaln.bam 203902828 BAM S16_L007_R1 submitted_unaligned CPTAC3 3d90aa3c-b946-4a81-84cd-224d597c8d43 c35f4a41e708c9e80cb1ecb503bd55c2 {"aliquot_tag": "ALQ_ed7de9e7", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.miRNA-Seq.S1_L007_R1.A C3L-04878 LSCC miRNA-Seq tissue_normal CPT0255260009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACAGTG_S1_L007_R1_001.unaln.bam 252119796 BAM S1_L007_R1 submitted_unaligned CPTAC3 d209d425-5683-4d28-9da6-234da87b4398 0995ee9d0ecdd03b5dd8180597721bcc {"aliquot_tag": "ALQ_97bdba87", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.miRNA-Seq.T.hg38 C3L-04878 LSCC miRNA-Seq tumor CPT0255240009 c9ec5f61-33a1-409a-b74b-3024265552bd_mirnaseq_gdc_realn.bam 228598500 BAM harmonized CPTAC3 e4ead1f4-50b1-4426-930b-774bb96ca2ec cd5e522c1911411cc06dfd5ab06da2f3 {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.RNA-Seq.chimeric.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.chimeric.gdc_realn.bam 89556924 BAM chimeric harmonized CPTAC3 66148929-f0e1-431c-8c49-3e559429204e e4e3d3483acb03be1df5bcb7d54d3bd6 {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.RNA-Seq.chimeric.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.chimeric.gdc_realn.bam 93993238 BAM chimeric harmonized CPTAC3 f9e8d6fa-2dc1-4dfe-a272-e8ed039960cf 9767b55f69024a8c087012cbf7b03eb2 {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.RNA-Seq.genomic.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.genomic.gdc_realn.bam 7558333864 BAM genomic harmonized CPTAC3 09ea9be4-2907-41fd-9bcf-4e87b81c4cbb c043b5ce98192da76d8a373e1e6fdfa5 {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.RNA-Seq.genomic.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.genomic.gdc_realn.bam 9708242052 BAM genomic harmonized CPTAC3 344f6bf5-1de5-4960-b61d-f5276a6a7b4f b3a2b954909903457bd5e6c19d985edd {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.RNA-Seq.S24_L006_R1.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R1_001.fastq.gz 4588674714 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 d499e349-70b5-4acb-a097-643e4ceef9c3 d328f1dcc1b51e55b33d31e82ab83dc2 {"aliquot_tag": "ALQ_ed7de9e7", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.RNA-Seq.S24_L006_R2.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R2_001.fastq.gz 5160688434 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 61bdea9c-2adf-472d-8f95-85800d2e2ec4 44313257b91cb26a022002e4d1453d73 {"aliquot_tag": "ALQ_ed7de9e7", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.RNA-Seq.S6_L002_R1.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 3590768876 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 0eae0b0a-3b86-409a-a7b4-0287abc1e9f0 5865033e8eb0918dc066a6020481d32a {"aliquot_tag": "ALQ_97bdba87", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.RNA-Seq.S6_L002_R2.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4028352591 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 eef84db7-0743-4761-be20-4fa8736b4034 4ab20dcf74f24d8a7e02f4341667fbc2 {"aliquot_tag": "ALQ_97bdba87", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.RNA-Seq.transcriptome.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.transcriptome.gdc_realn.bam 8519887327 BAM transcriptome harmonized CPTAC3 9f61a929-0f79-4add-bfbb-f13371629618 cbe70f800954e394dede22789f03a17c {"aliquot_tag": "ALQ_97bdba87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.RNA-Seq.transcriptome.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.transcriptome.gdc_realn.bam 11024340555 BAM transcriptome harmonized CPTAC3 e69b6b86-7d77-404a-868e-2ef80d723623 355fe56e78a13c3dedd21843359b42d3 {"aliquot_tag": "ALQ_ed7de9e7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.WGS.N C3L-04878 LSCC WGS blood_normal CPT0255360002 CPT0255360002.WholeGenome.RP-2158.bam 24848420863 BAM submitted_aligned CPTAC3 7eb956f8-37a4-4f14-bf28-18d99110c807 ed4ad8bc347fe252985ebb6bad4c7dc3 {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04878.WGS.N.hg38 C3L-04878 LSCC WGS blood_normal CPT0255360002 9a24adbe-9814-4111-ad5c-be83ee688559_wgs_gdc_realn.bam 73320254134 BAM harmonized CPTAC3 5d3c329c-f915-45fd-9d44-ab657947b05a b7f7e9a7266fc05f8bca0beed9c0715b {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04878.WGS.T C3L-04878 LSCC WGS tumor CPT0255240006 CPT0255240006.WholeGenome.RP-2158.bam 46451037455 BAM submitted_aligned CPTAC3 a70cacfa-0661-40d9-a4fd-0d912c3355bd aa566aa80c683791e5de7984d2fa3284 {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.WGS.T.hg38 C3L-04878 LSCC WGS tumor CPT0255240006 6ece0a12-2fd2-48ca-bbce-14090dded31d_wgs_gdc_realn.bam 132044860943 BAM harmonized CPTAC3 8adc8708-db6d-4478-8f6c-220011c1e560 389f9a9d47175f2c0cde53fa9f96e2e7 {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.WXS.A C3L-04878 LSCC WXS tissue_normal CPT0255260006 CPT0255260006.WholeExome.RP-1303.bam 38551556852 BAM submitted_aligned CPTAC3 9b802bb9-2675-483e-9ae8-80dd25226307 0572a907a29f347edc184c02bc44ac76 {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.WXS.A.hg38 C3L-04878 LSCC WXS tissue_normal CPT0255260006 08ad4ab9-856d-40a3-88e2-dc8bcdbe2c37_wxs_gdc_realn.bam 53592713740 BAM harmonized CPTAC3 1fbc7c7f-3a52-4c38-9f93-47694cb108e7 e87ff66fe3f65d8a86ef3f040f8254a9 {"aliquot_tag": "ALQ_702a716", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04878.WXS.N C3L-04878 LSCC WXS blood_normal CPT0255360002 CPT0255360002.WholeExome.RP-1303.bam 21395236546 BAM submitted_aligned CPTAC3 b6ecc3b9-ba2f-40ac-b8de-bbeed107db36 96cfa1b561ebbacd594f18b5914a85c6 {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04878.WXS.N.hg38 C3L-04878 LSCC WXS blood_normal CPT0255360002 9a24adbe-9814-4111-ad5c-be83ee688559_wxs_gdc_realn.bam 29123621907 BAM harmonized CPTAC3 0ae4fe96-3abb-484e-a9d0-9204dec287c1 f6ff18592c1b5caeea6781b55c86c059 {"aliquot_tag": "ALQ_cb33b0aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04878.WXS.T C3L-04878 LSCC WXS tumor CPT0255240006 CPT0255240006.WholeExome.RP-1303.bam 42223872489 BAM submitted_aligned CPTAC3 230f486f-d728-4079-bf4b-7d371a8dd486 88ebec1bb61cc63ce419daccee95f444 {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04878.WXS.T.hg38 C3L-04878 LSCC WXS tumor CPT0255240006 6ece0a12-2fd2-48ca-bbce-14090dded31d_wxs_gdc_realn.bam 58806856272 BAM harmonized CPTAC3 62578ff2-f391-4a8d-b3df-5d0703b6119f 5e756dd07b533405f209911a8e0f25ba {"aliquot_tag": "ALQ_7dc2f476", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.MethArray.Green.A C3L-04880 LSCC Methylation_Array tissue_normal CPT0253480006 204372030079_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4b951416-a09e-4177-830a-b682ac806b8d 1c3ddf40e940c246f691ac9342ccb498 {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.MethArray.Green.T C3L-04880 LSCC Methylation_Array tumor CPT0253470006 204367470157_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1337f910-2459-44d9-a9c4-ac40fe7fbfff 3f57c5ad29bd34ccd21d6ba5e0f46c5d {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.MethArray.Red.A C3L-04880 LSCC Methylation_Array tissue_normal CPT0253480006 204372030079_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 7b1c87a8-bbbc-439a-87b8-d39cb61e7975 581486f56e46abb062b646274827c0da {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.MethArray.Red.T C3L-04880 LSCC Methylation_Array tumor CPT0253470006 204367470157_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 0361a1ad-8a0c-4653-84bb-6d01e89adaa1 778a64804fdd27609b6ec2e465049d00 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.miRNA-Seq.A.hg38 C3L-04880 LSCC miRNA-Seq tissue_normal CPT0253480009 7e014f14-93d9-4274-9d22-5c402e23bd92_mirnaseq_gdc_realn.bam 268251774 BAM harmonized CPTAC3 3947aa35-001f-402c-8554-d29453f93667 daaa854a9aa7949eb853450b286d88b2 {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.miRNA-Seq.S29_L007_R1.T C3L-04880 LSCC miRNA-Seq tumor CPT0253470009 200224_UNC31-K00269_0267_AHC722BBXY_CAACTA_S29_L007_R1_001.unaln.bam 256466083 BAM S29_L007_R1 submitted_unaligned CPTAC3 5dcbcb08-9dec-46ef-a3b6-77094bfc3572 34f2e98831cd827bd67cf28286e342c0 {"aliquot_tag": "ALQ_1f544510", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.miRNA-Seq.S47_L006_R1.A C3L-04880 LSCC miRNA-Seq tissue_normal CPT0253480009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCGAAG_S47_L006_R1_001.unaln.bam 240633738 BAM S47_L006_R1 submitted_unaligned CPTAC3 4bff370d-3f48-4070-9d96-e41d5d26f60e 63c14752b83ea58c162a319a847c0ec5 {"aliquot_tag": "ALQ_9d04d2c1", "sample": "S47", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.miRNA-Seq.T.hg38 C3L-04880 LSCC miRNA-Seq tumor CPT0253470009 df476473-7d60-4a83-8152-8fac3d7c5330_mirnaseq_gdc_realn.bam 281482737 BAM harmonized CPTAC3 4ff45129-c852-48df-a2c5-aeb976e29ede 052c71bb5dd237c89fe77be53f0d8d18 {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.RNA-Seq.chimeric.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.chimeric.gdc_realn.bam 37015012 BAM chimeric harmonized CPTAC3 2b5b0aca-4c9f-4ff2-97b8-e40b31e45b74 3678694b57e7e39bddb1ea39b3d3653a {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.RNA-Seq.chimeric.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.chimeric.gdc_realn.bam 27600675 BAM chimeric harmonized CPTAC3 a1342a2c-e72e-40c4-b150-21d51740ba56 bd9c9575b0b73c968ad8557f5ef9ddb1 {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.RNA-Seq.genomic.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.genomic.gdc_realn.bam 9956156919 BAM genomic harmonized CPTAC3 e45da645-dcf2-47f0-8120-01c5c003991f 318ff976f91bab9477cab3363384f23d {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.RNA-Seq.genomic.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.genomic.gdc_realn.bam 7019605586 BAM genomic harmonized CPTAC3 a104cf86-1e1c-4168-8fc6-299953497860 d8a4ed4687845d7d111aaaee3e1711ae {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.RNA-Seq.S13_L004_R1.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3271028811 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 3e430357-3552-49c5-a783-44fe28641208 53f04777700eb070116756da3515d8ff {"aliquot_tag": "ALQ_1f544510", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.RNA-Seq.S13_L004_R2.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 3513897709 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 607a4186-d2e9-4176-8d0b-4aaaa6d49250 65bec1d735321a8efb0d2a24653da454 {"aliquot_tag": "ALQ_1f544510", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.RNA-Seq.S32_L008_R1.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R1_001.fastq.gz 4395587682 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 1d0e3440-e377-4cf2-b1e1-69b467e581c9 abbbfc30f4efa7cf01c3bcc7eefcc94c {"aliquot_tag": "ALQ_9d04d2c1", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.RNA-Seq.S32_L008_R2.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R2_001.fastq.gz 5473367389 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 a6622f25-84c9-48e2-bca1-73b5d176648d 7e4cd746a2a61c4d5ddd096c5083b058 {"aliquot_tag": "ALQ_9d04d2c1", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.RNA-Seq.transcriptome.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.transcriptome.gdc_realn.bam 11617070139 BAM transcriptome harmonized CPTAC3 9d22fba6-0241-485e-9024-56ca3622145b 9c45e49033e324a993a3facbfdc5bd2f {"aliquot_tag": "ALQ_9d04d2c1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.RNA-Seq.transcriptome.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.transcriptome.gdc_realn.bam 8929528890 BAM transcriptome harmonized CPTAC3 826176a2-ca88-44a0-a803-5cde5b99fd22 432448c09f71e624daef235890f9b65b {"aliquot_tag": "ALQ_1f544510", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.WGS.N C3L-04880 LSCC WGS blood_normal CPT0253590002 CPT0253590002.WholeGenome.RP-2158.bam 26459494415 BAM submitted_aligned CPTAC3 5da2c091-2d7e-4972-8cc7-c5eab0d39737 a84406b1c4fd86bb0be48311e6a7b972 {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04880.WGS.N.hg38 C3L-04880 LSCC WGS blood_normal CPT0253590002 aedbe9f5-5a65-4d32-9583-36c12c019c25_wgs_gdc_realn.bam 77856755373 BAM harmonized CPTAC3 4b24c115-f177-402c-9301-cd422a5aad9a 531d295b1f5e8b661193257fa9810047 {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04880.WGS.T C3L-04880 LSCC WGS tumor CPT0253470006 CPT0253470006.WholeGenome.RP-2158.bam 19965291697 BAM submitted_aligned CPTAC3 4c8261c7-0626-4d67-8000-c7d0b5543be0 3acb6e5cc655e78488ad9c56605322d0 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.WGS.T.hg38 C3L-04880 LSCC WGS tumor CPT0253470006 4fb41834-716f-4c81-a12e-ec631bd9757e_wgs_gdc_realn.bam 58213704449 BAM harmonized CPTAC3 d9d7bc96-f9b4-49f1-bc4c-a86f23e562de 4f50d29262ed0429b4c4442b2a0538f3 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.WXS.A C3L-04880 LSCC WXS tissue_normal CPT0253480006 CPT0253480006.WholeExome.RP-1303.bam 33670093953 BAM submitted_aligned CPTAC3 1e28f14a-c0cc-4c93-b375-cd6897e0c8d5 909d7c2d11ebad719703b55ffd98649a {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.WXS.A.hg38 C3L-04880 LSCC WXS tissue_normal CPT0253480006 1ce99047-b8ca-435f-93fb-102559bd9bcd_wxs_gdc_realn.bam 46112971938 BAM harmonized CPTAC3 226f7258-8c4e-4282-9c22-2617683413b5 b7231a80915beb3e7ac5a2d097734d78 {"aliquot_tag": "ALQ_dbbcf50", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04880.WXS.N C3L-04880 LSCC WXS blood_normal CPT0253590002 CPT0253590002.WholeExome.RP-1303.bam 22026892288 BAM submitted_aligned CPTAC3 c0e1589c-56f3-4841-85e4-819530ec2f5a 1e86be63fb19405068bbe56f76f08c0b {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04880.WXS.N.hg38 C3L-04880 LSCC WXS blood_normal CPT0253590002 aedbe9f5-5a65-4d32-9583-36c12c019c25_wxs_gdc_realn.bam 30538067256 BAM harmonized CPTAC3 a12ae435-9a48-4f7a-aa44-870537739550 b70b6f3132dffe408c3d742c6ec2d9a9 {"aliquot_tag": "ALQ_fceaf15c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04880.WXS.T C3L-04880 LSCC WXS tumor CPT0253470006 CPT0253470006.WholeExome.RP-1303.bam 24731425868 BAM submitted_aligned CPTAC3 e68e4b98-ca9a-40bb-8daa-0d7e6ee55377 fce59fce1ada942f022612f416bf589e {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04880.WXS.T.hg38 C3L-04880 LSCC WXS tumor CPT0253470006 4fb41834-716f-4c81-a12e-ec631bd9757e_wxs_gdc_realn.bam 33691107613 BAM harmonized CPTAC3 6fcdc69e-0140-4afb-832a-1b06c34f08ce 71c26cd7ab9b6df2a9b23cb6c63899f9 {"aliquot_tag": "ALQ_8feb5881", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.MethArray.Green.A C3L-04883 LSCC Methylation_Array tissue_normal CPT0253670006 204372030161_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 eb10c93c-1e53-4e23-a0f4-2a6f1b9bd6e0 2967e648a705f069091d7ed266ea5f9a {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.MethArray.Green.T C3L-04883 LSCC Methylation_Array tumor CPT0253630006 204372030023_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 1c0d236d-8240-4323-9d76-5b74e2d63f6e e25fa355e2f49edc07fa29b4f9811433 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.MethArray.Red.A C3L-04883 LSCC Methylation_Array tissue_normal CPT0253670006 204372030161_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 3d2fff5d-d63f-4b13-aa89-fac16debd1f5 4d3e5429c779114bfbd822b6f141b0ac {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.MethArray.Red.T C3L-04883 LSCC Methylation_Array tumor CPT0253630006 204372030023_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 9f464078-67dd-4ea0-849b-77b326e1cbea 3779dfa4e54f012bab441fbaeaef2987 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.miRNA-Seq.A.hg38 C3L-04883 LSCC miRNA-Seq tissue_normal CPT0253670009 4a33edd1-55fe-4e8a-b18f-ba02099714b3_mirnaseq_gdc_realn.bam 266134817 BAM harmonized CPTAC3 add655c1-aaff-4ae4-840c-d4796386d9d7 6729b1b19a8c1ce825b51affcce55424 {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.miRNA-Seq.S21_L001_R1.T C3L-04883 LSCC miRNA-Seq tumor CPT0253630013 200325_UNC31-K00269_0272_AHHC2NBBXY_TCATTC_S21_L001_R1_001.unaln.bam 172304920 BAM S21_L001_R1 submitted_unaligned CPTAC3 b83ed21b-3eca-43e1-8d17-c6ccdea6a9f1 86fb3611d3e48ce15fb1362e615cadc6 {"aliquot_tag": "ALQ_5ed29a84", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.miRNA-Seq.S48_L006_R1.A C3L-04883 LSCC miRNA-Seq tissue_normal CPT0253670009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 233582558 BAM S48_L006_R1 submitted_unaligned CPTAC3 226ea2cf-91c8-4430-8a61-84f9baed08c4 56c8ea627888a94f24e227e76bb2d9b9 {"aliquot_tag": "ALQ_529ce41b", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.miRNA-Seq.T.hg38 C3L-04883 LSCC miRNA-Seq tumor CPT0253630013 db271d01-a7f3-4049-a2fd-0fe44a88805b_mirnaseq_gdc_realn.bam 192206320 BAM harmonized CPTAC3 67633cee-d9c9-4e01-8b5e-b286fdfaf286 afd47a782978b7fb267e7aa659f71f72 {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.RNA-Seq.chimeric.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.chimeric.gdc_realn.bam 26940528 BAM chimeric harmonized CPTAC3 6ad93264-73ed-49af-9fd3-17c0fc7ad9d0 d484a395db323524f162e16bac32a28f {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.RNA-Seq.chimeric.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.chimeric.gdc_realn.bam 42485720 BAM chimeric harmonized CPTAC3 4d5a5ea1-2440-4c2b-8261-9ef47ee72392 ba6a8d3a7497a7d7c14095230ae40143 {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.RNA-Seq.genomic.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.genomic.gdc_realn.bam 7613280714 BAM genomic harmonized CPTAC3 513c3e6c-3f0e-4e96-85fd-62cdb3a224d9 e34a2e9591d4879a95e2999a38571bd9 {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.RNA-Seq.genomic.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.genomic.gdc_realn.bam 7665470410 BAM genomic harmonized CPTAC3 a3f69762-e36d-4c7a-8f73-f6ff06c15438 def11abbdbac17688a7d0d3b893ce30e {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.RNA-Seq.S29_L008_R1.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R1_001.fastq.gz 3159378545 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 ff5812ee-f6d4-40dd-8c4a-fcf956d9c9aa 9af62120288dfe5d03ec2a7fca0e963d {"aliquot_tag": "ALQ_529ce41b", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.RNA-Seq.S29_L008_R1.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R1_001.fastq.gz 3733715364 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 0b7f7e47-594f-4ad3-b45f-34b2a1666fda 90b674f89607fcb0d1ef01bfe9b0a18b {"aliquot_tag": "ALQ_5ed29a84", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.RNA-Seq.S29_L008_R2.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R2_001.fastq.gz 4047572137 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 078f549a-e1ee-482c-bf00-eb731eb4f8d1 d546f6243031eca29403fb1f7cd581c5 {"aliquot_tag": "ALQ_529ce41b", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.RNA-Seq.S29_L008_R2.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R2_001.fastq.gz 3864111802 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 1bce6eab-a43b-422e-bc9a-4e6a7f4053c5 1d41b6bcfadc1abce51f3bbf5a9fb473 {"aliquot_tag": "ALQ_5ed29a84", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.RNA-Seq.transcriptome.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.transcriptome.gdc_realn.bam 8082377679 BAM transcriptome harmonized CPTAC3 47281401-ae49-40a3-8196-ef4015cd85e3 16b445177a7a83490d870a9daf93c3b1 {"aliquot_tag": "ALQ_529ce41b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.RNA-Seq.transcriptome.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.transcriptome.gdc_realn.bam 12411814660 BAM transcriptome harmonized CPTAC3 3c6615a5-6d09-4809-ad38-187590021bd9 074f452785b0e0936448320c61994b79 {"aliquot_tag": "ALQ_5ed29a84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.WGS.N C3L-04883 LSCC WGS blood_normal CPT0253770002 CPT0253770002.WholeGenome.RP-2158.bam 24553953880 BAM submitted_aligned CPTAC3 d27a522f-e9ea-4d98-a28f-05c27cf76020 106ef1d2ba431041ce861679d574d940 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04883.WGS.N.hg38 C3L-04883 LSCC WGS blood_normal CPT0253770002 a759674b-f5b7-4d18-8019-f1538c01206c_wgs_gdc_realn.bam 74370034798 BAM harmonized CPTAC3 8edd72ad-d390-4eac-b045-89c157968bcb f1e7042d40d03a56f0512804c5c0c9f1 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04883.WGS.T C3L-04883 LSCC WGS tumor CPT0253630006 CPT0253630006.WholeGenome.RP-2158.bam 28765276823 BAM submitted_aligned CPTAC3 650e265a-f988-4c91-9451-0a506cd46f38 f196479dc87fc1b31a211195d9608865 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.WGS.T.hg38 C3L-04883 LSCC WGS tumor CPT0253630006 3aa9b82b-f84c-4726-b2b4-ada4bf65547c_wgs_gdc_realn.bam 86462965526 BAM harmonized CPTAC3 824af069-89df-4627-8a57-5a5b826430aa 07001b6620b52f190226180ad5193911 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.WXS.A C3L-04883 LSCC WXS tissue_normal CPT0253670006 CPT0253670006.WholeExome.RP-1303.bam 21031542775 BAM submitted_aligned CPTAC3 238fc677-7a9b-4ecf-92e4-966c7af90308 218ce1a4712e4ddfee5c7fb6a9e4c777 {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.WXS.A.hg38 C3L-04883 LSCC WXS tissue_normal CPT0253670006 2b9c06ad-2dbf-4ff2-ba83-b60cdb68a7a7_wxs_gdc_realn.bam 28602010742 BAM harmonized CPTAC3 c1934b15-ea85-4eae-aa80-4537f7436772 4955ecd42255af3aaf1060c4878a9ffe {"aliquot_tag": "ALQ_c223f98a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04883.WXS.N C3L-04883 LSCC WXS blood_normal CPT0253770002 CPT0253770002.WholeExome.RP-1303.bam 23909458894 BAM submitted_aligned CPTAC3 9a993c0e-095e-488d-9952-4e7defc71905 0fd84921f266796df691f74256f3ebe5 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04883.WXS.N.hg38 C3L-04883 LSCC WXS blood_normal CPT0253770002 a759674b-f5b7-4d18-8019-f1538c01206c_wxs_gdc_realn.bam 32204613290 BAM harmonized CPTAC3 a279ebcb-d0a5-4431-bdc7-14da2c622510 aeb16f545cfa6ce628741d12a54fd036 {"aliquot_tag": "ALQ_e12ee36", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04883.WXS.T C3L-04883 LSCC WXS tumor CPT0253630006 CPT0253630006.WholeExome.RP-1303.bam 24339447151 BAM submitted_aligned CPTAC3 6e6bf468-52e8-47d8-bb2b-f4a8446a1ee1 be6f7023f7805e33df7914c6ba05ca12 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04883.WXS.T.hg38 C3L-04883 LSCC WXS tumor CPT0253630006 3aa9b82b-f84c-4726-b2b4-ada4bf65547c_wxs_gdc_realn.bam 33381589739 BAM harmonized CPTAC3 77655f78-d4d9-4cb8-ada3-443adf5af349 6524c9f48d4fa21ae4a8fdac12e41474 {"aliquot_tag": "ALQ_37a35f4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.MethArray.Green.A C3L-04887 LSCC Methylation_Array tissue_normal CPT0253320006 204372030014_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 a216ed0f-dd11-46bd-b54f-33611ecbf5ff c19a612b80e819c64e327332f09e340e {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.MethArray.Green.T C3L-04887 LSCC Methylation_Array tumor CPT0253280006 204367470157_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 11ff3482-e3ea-4d83-a5da-685c21c6d81b ac3c957f648db367dec2948fcf2f729c {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.MethArray.Red.A C3L-04887 LSCC Methylation_Array tissue_normal CPT0253320006 204372030014_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 5f1a00c2-23d3-43ae-b607-a8778db0978a 3cfadaa31da0ff8f44800d65bbc44ba8 {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.MethArray.Red.T C3L-04887 LSCC Methylation_Array tumor CPT0253280006 204367470157_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 e700635f-54f4-4b3b-bee3-3c97c07fd4ea b4c45921626e10a60839935da4b8e18b {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.miRNA-Seq.A.hg38 C3L-04887 LSCC miRNA-Seq tissue_normal CPT0253320009 d02e77f5-301c-4032-92fc-6778d3683710_mirnaseq_gdc_realn.bam 230248996 BAM harmonized CPTAC3 1746d937-9061-40c6-a928-2c785267a898 790e76cb186ffd6f499dc74e96c24cb8 {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.miRNA-Seq.S28_L007_R1.T C3L-04887 LSCC miRNA-Seq tumor CPT0253280009 200224_UNC31-K00269_0267_AHC722BBXY_CAAAAG_S28_L007_R1_001.unaln.bam 188271545 BAM S28_L007_R1 submitted_unaligned CPTAC3 bba25f7f-a651-49d6-b7f4-4d4d492cf913 772a8cb65e580b4012bb0f7fe926d75a {"aliquot_tag": "ALQ_4b5d31dc", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.miRNA-Seq.S46_L006_R1.A C3L-04887 LSCC miRNA-Seq tissue_normal CPT0253320009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCCCGA_S46_L006_R1_001.unaln.bam 206102985 BAM S46_L006_R1 submitted_unaligned CPTAC3 126070eb-f4cd-471f-a189-0616ba9d00ae af03efc27168e973546ea09b1f2fdc3b {"aliquot_tag": "ALQ_cab1fad8", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.miRNA-Seq.T.hg38 C3L-04887 LSCC miRNA-Seq tumor CPT0253280009 208a85fa-664e-44a2-94d5-633762f24e91_mirnaseq_gdc_realn.bam 209568619 BAM harmonized CPTAC3 739a985e-b451-4803-b9dd-685b85b1688f 24b526083adbdec4d6a497cfe5296cce {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.RNA-Seq.chimeric.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.chimeric.gdc_realn.bam 32017752 BAM chimeric harmonized CPTAC3 18386b51-8bde-4eab-9ad2-2843f9aa47a7 2927b5715ea3e04660ddedac28b794e0 {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.RNA-Seq.chimeric.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.chimeric.gdc_realn.bam 31520150 BAM chimeric harmonized CPTAC3 e173fc59-b7fc-48ee-8266-30c508f277cc f9a6018df217be1dc14fb3f406932f45 {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.RNA-Seq.genomic.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.genomic.gdc_realn.bam 8517996553 BAM genomic harmonized CPTAC3 4e560c95-d6ad-432f-a196-fea9be48e47e 1bbc18b9cbb2d2a521732ed96d57f5d4 {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.RNA-Seq.genomic.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.genomic.gdc_realn.bam 7422779741 BAM genomic harmonized CPTAC3 bdc4b61c-3292-4be1-a799-4579b77a1157 79cee1a4ebd37637dd13c5582a4eabbc {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.RNA-Seq.S12_L003_R1.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3678355601 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 c6488efc-f8d4-4787-a5fe-b1d9826b2f1a 2f14616893c8c6fd4da26d599e5c7284 {"aliquot_tag": "ALQ_4b5d31dc", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.RNA-Seq.S12_L003_R2.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4010827900 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 db24531a-a3b5-40f3-938c-17292be8b1e1 2008ed4cb073c17beaf231cbd0b3f601 {"aliquot_tag": "ALQ_4b5d31dc", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.RNA-Seq.S31_L008_R1.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R1_001.fastq.gz 3774059091 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 7f9d157c-47cc-484c-b95d-106872361319 be4a0d2e016cd9eb8f77c8338be80302 {"aliquot_tag": "ALQ_cab1fad8", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.RNA-Seq.S31_L008_R2.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R2_001.fastq.gz 4691084386 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 1fd26213-56e3-4a31-80bb-1a34a7f104f1 920ef785ccfa599db5aeef6511a5561b {"aliquot_tag": "ALQ_cab1fad8", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.RNA-Seq.transcriptome.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.transcriptome.gdc_realn.bam 9519585111 BAM transcriptome harmonized CPTAC3 23c3989c-fc41-49d6-9c87-6a0a4e495e06 ff55e486461058485de857b5951074fe {"aliquot_tag": "ALQ_cab1fad8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.RNA-Seq.transcriptome.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.transcriptome.gdc_realn.bam 12176394958 BAM transcriptome harmonized CPTAC3 892c38c8-b8c5-4a33-ac65-77b8dfbc3007 a428ab9a8ababf9e927e45ab4c08774f {"aliquot_tag": "ALQ_4b5d31dc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.WGS.N C3L-04887 LSCC WGS blood_normal CPT0253410002 CPT0253410002.WholeGenome.RP-2158.bam 29189595327 BAM submitted_aligned CPTAC3 a37e2e04-cd19-4797-80c2-28747f6e75a9 758ad934eaef03266808ff39e3d4b564 {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04887.WGS.N C3L-04887 LSCC WGS blood_normal CPT0253410002 CPT0253410002.WholeGenome.RP-2158.bam 29241738931 BAM submitted_aligned CPTAC3 1aab6bdf-e132-429f-9e7a-f865c216a0c2 ba325d3e9c7f90281ab83aa481a82cbe {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-04887.WGS.N.hg38 C3L-04887 LSCC WGS blood_normal CPT0253410002 5cffaff7-c587-4952-84c9-a4f0b8fe5baf_wgs_gdc_realn.bam 88101377215 BAM harmonized CPTAC3 e49949ea-616f-43c1-9c7b-977d869cad50 edd5dea05056d1a5f2e208c5c393a389 {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04887.WGS.T C3L-04887 LSCC WGS tumor CPT0253280006 CPT0253280006.WholeGenome.RP-2158.bam 28364211537 BAM submitted_aligned CPTAC3 b4fbe6a1-22e9-4bf3-99ca-b35ec4b43ccd efdf2f451f12008902cf0f79951ce2e5 {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.WGS.T.hg38 C3L-04887 LSCC WGS tumor CPT0253280006 0651482e-849b-42f0-9be2-ca88eee9c2a3_wgs_gdc_realn.bam 83234656114 BAM harmonized CPTAC3 bc592ed5-c7b8-4882-bd0e-d13a78aed20d 6534da0a77cfa45d535cd95e8d30e101 {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.WXS.A C3L-04887 LSCC WXS tissue_normal CPT0253320006 CPT0253320006.WholeExome.RP-1303.bam 26869120119 BAM submitted_aligned CPTAC3 d5ab7ad5-d536-4876-9b97-1f85576245c7 fe358c0c9d5ca6a0ea5df57adf593697 {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.WXS.A.hg38 C3L-04887 LSCC WXS tissue_normal CPT0253320006 212149b4-3eb0-4d0a-ab86-982e1772a960_wxs_gdc_realn.bam 36757413330 BAM harmonized CPTAC3 e7ba0d7e-a975-46d5-bdc5-b0e4d36cbc38 56446eab69540124729071096c5a388a {"aliquot_tag": "ALQ_5a0ee749", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04887.WXS.N C3L-04887 LSCC WXS blood_normal CPT0253410002 CPT0253410002.WholeExome.RP-1303.bam 25845856122 BAM submitted_aligned CPTAC3 040ee52f-f34c-4fcd-8117-ddfec80bf026 64cff2b7070b2aac5e74af9db1c42c35 {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04887.WXS.N.hg38 C3L-04887 LSCC WXS blood_normal CPT0253410002 5cffaff7-c587-4952-84c9-a4f0b8fe5baf_wxs_gdc_realn.bam 35083668351 BAM harmonized CPTAC3 30b08834-304d-4c22-b2ec-f3223be756f3 660314084d2f8d0d546d2eead441076a {"aliquot_tag": "ALQ_7c66938", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04887.WXS.T C3L-04887 LSCC WXS tumor CPT0253280006 CPT0253280006.WholeExome.RP-1303.bam 18822691383 BAM submitted_aligned CPTAC3 d69bc50b-d2d3-46bd-86e9-fcf21b7f8c9a 53182dae6c0057e3c9327e7442134320 {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04887.WXS.T.hg38 C3L-04887 LSCC WXS tumor CPT0253280006 0651482e-849b-42f0-9be2-ca88eee9c2a3_wxs_gdc_realn.bam 25807446542 BAM harmonized CPTAC3 784d3231-9a48-44e0-9194-4caddb927c84 cc3523211c567af68216a8baa923dded {"aliquot_tag": "ALQ_dbe22c4d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.MethArray.Green.A C3L-04888 LSCC Methylation_Array tissue_normal CPT0254220006 204372030127_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6c79623b-afd2-41df-a58b-d04e6f69e4f1 35da7ffa328d50d0eb19333da443e4bb {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.MethArray.Green.T C3L-04888 LSCC Methylation_Array tumor CPT0254190006 204372030139_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6c787069-bbff-43fe-80c6-0e77107fc977 cb0b1f1fef81682970fd3a1edec228d7 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.MethArray.Red.A C3L-04888 LSCC Methylation_Array tissue_normal CPT0254220006 204372030127_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 946d159c-89b0-4032-b7f5-cdc033b1a9bc d57740e6f84e505eed9aebb38b90e58a {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.MethArray.Red.T C3L-04888 LSCC Methylation_Array tumor CPT0254190006 204372030139_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 330e766a-d2ef-413b-a16a-e69762940a5b 51b03d7f6c86f54fba41aa2ecd1f3634 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.miRNA-Seq.A.hg38 C3L-04888 LSCC miRNA-Seq tissue_normal CPT0254220009 88c8a8b1-5992-44a9-8a62-a76411009b8b_mirnaseq_gdc_realn.bam 257125033 BAM harmonized CPTAC3 3f4f6029-2018-43bb-bc0e-6b487cd67e47 4c14b673fc6f1990953110a883e1c646 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.miRNA-Seq.S24_L007_R1.A C3L-04888 LSCC miRNA-Seq tissue_normal CPT0254220009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TTAGGC_S24_L007_R1_001.unaln.bam 231430370 BAM S24_L007_R1 submitted_unaligned CPTAC3 8b6a465d-3f3d-487b-84e1-780f64e1bb8e 96e147b0aa71f331af2b2455cb193460 {"aliquot_tag": "ALQ_c44a17f3", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.miRNA-Seq.S32_L007_R1.T C3L-04888 LSCC miRNA-Seq tumor CPT0254190009 200224_UNC31-K00269_0267_AHC722BBXY_CACTCA_S32_L007_R1_001.unaln.bam 234244879 BAM S32_L007_R1 submitted_unaligned CPTAC3 570c32ee-f2e3-4756-92f7-2f3d61086880 35b5a5eca14b69f887c26fb04975c354 {"aliquot_tag": "ALQ_350e544c", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.miRNA-Seq.T.hg38 C3L-04888 LSCC miRNA-Seq tumor CPT0254190009 a24146c7-9a8c-4ef6-b344-9412cdb61cc7_mirnaseq_gdc_realn.bam 262392851 BAM harmonized CPTAC3 ad3dda41-6bbf-4ee6-b407-d2dc926ec6af 158b221b19cbc688f26d75daf3312041 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.RNA-Seq.chimeric.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.chimeric.gdc_realn.bam 91067359 BAM chimeric harmonized CPTAC3 49e960f7-471a-4305-af97-8c25a19b7de3 a3446c2b3292023d493562fb005456f4 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.RNA-Seq.chimeric.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.chimeric.gdc_realn.bam 44760746 BAM chimeric harmonized CPTAC3 d06fb238-00a8-4b29-a28c-19771af669a1 459f8967dec16460b849234374615a29 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.RNA-Seq.genomic.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.genomic.gdc_realn.bam 7798814943 BAM genomic harmonized CPTAC3 6af86fbe-58df-40af-bb3e-c1e3d8f7df1f 32d987e325abeeec4c00f5420918b0d1 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.RNA-Seq.genomic.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.genomic.gdc_realn.bam 9523907482 BAM genomic harmonized CPTAC3 e911331c-8a58-4439-827e-f1b6389a1b62 9dc36263dfffc15c1027272f6806d9e6 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.RNA-Seq.S16_L004_R1.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R1_001.fastq.gz 4704855751 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 29bd9170-cb70-4973-8fbb-7d1ee12d86d2 1cf04d2df19bff694780ba35aeb089b4 {"aliquot_tag": "ALQ_350e544c", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.RNA-Seq.S16_L004_R2.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R2_001.fastq.gz 5039303678 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 1eab0026-17bc-4e7a-9184-3e0612798272 e027ca8f5298a7bd9cd1ed669230cee9 {"aliquot_tag": "ALQ_350e544c", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.RNA-Seq.S1_L001_R1.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R1_001.fastq.gz 3746396808 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 2ee25616-d457-4e76-bebe-3a10ff073b3d 48ce7160ab4d2017ccbb0b04d39f3b15 {"aliquot_tag": "ALQ_c44a17f3", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.RNA-Seq.S1_L001_R2.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R2_001.fastq.gz 4180707908 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 eeafd62f-8a54-4036-a906-1de79beffa90 6e59ec4a324e4cefb822479bcb43fbdc {"aliquot_tag": "ALQ_c44a17f3", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.RNA-Seq.transcriptome.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.transcriptome.gdc_realn.bam 9440645552 BAM transcriptome harmonized CPTAC3 1365c20b-2700-434d-90be-048eb1dd07a6 ff1da17b48b9168e19040fb58137b3e0 {"aliquot_tag": "ALQ_c44a17f3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.RNA-Seq.transcriptome.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.transcriptome.gdc_realn.bam 12801374329 BAM transcriptome harmonized CPTAC3 45410c10-bbef-4661-ad1b-3885f6e92943 5c0dbd9b50b2c525b80eaebdf248f561 {"aliquot_tag": "ALQ_350e544c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.WGS.N C3L-04888 LSCC WGS blood_normal CPT0254310002 CPT0254310002.WholeGenome.RP-2158.bam 26253581394 BAM submitted_aligned CPTAC3 b2d8010e-d8a8-48b6-b4f8-dcdc18c41399 51e2b17ee89ed023b1561fc33de59049 {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04888.WGS.N.hg38 C3L-04888 LSCC WGS blood_normal CPT0254310002 4fb6deda-0533-4e32-9ccb-5e10d36c9ff1_wgs_gdc_realn.bam 76922524747 BAM harmonized CPTAC3 fc9b8c98-999c-4644-8658-7bb34c36513b cd63a1968b9e8e64f9d42c55ce6d2fa5 {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04888.WGS.T C3L-04888 LSCC WGS tumor CPT0254190006 CPT0254190006.WholeGenome.RP-2158.bam 30154002169 BAM submitted_aligned CPTAC3 50b292ad-31dd-4f70-9efb-05aa968e64dd 61cb9a0ed180463e48811a212e76dc91 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.WGS.T.hg38 C3L-04888 LSCC WGS tumor CPT0254190006 c3b26a8b-5ea1-40f1-97c6-b5a07db8d558_wgs_gdc_realn.bam 91240677303 BAM harmonized CPTAC3 15c27f47-6aef-4abd-adaa-12766157c472 61f758cccc353954a379b91c28d91548 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.WXS.A C3L-04888 LSCC WXS tissue_normal CPT0254220006 CPT0254220006.WholeExome.RP-1303.bam 20583692172 BAM submitted_aligned CPTAC3 991df4be-92bc-421c-957f-b55bc1eaf575 f6e3aeeb2fd5721eaebbccd46ebcafb0 {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.WXS.A.hg38 C3L-04888 LSCC WXS tissue_normal CPT0254220006 8b195b0f-8852-4237-bf0a-8e28a4b40dd8_wxs_gdc_realn.bam 29145132011 BAM harmonized CPTAC3 fee27fb5-b6a4-4751-962f-a2890be8d5e6 6ffaf95a2aeb72fc2128a1b6d4cc046b {"aliquot_tag": "ALQ_54f50a62", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04888.WXS.N C3L-04888 LSCC WXS blood_normal CPT0254310002 CPT0254310002.WholeExome.RP-1303.bam 25861636484 BAM submitted_aligned CPTAC3 21004fe8-9192-46fa-92f0-6959f83b7bab ec6bc30a2c7b44346e768bae8610e434 {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04888.WXS.N.hg38 C3L-04888 LSCC WXS blood_normal CPT0254310002 4fb6deda-0533-4e32-9ccb-5e10d36c9ff1_wxs_gdc_realn.bam 34109668510 BAM harmonized CPTAC3 f9e163f7-d12b-4f38-a8fa-3fb88f7e991b f612f888fcaa4429a3a0f45d90d1588e {"aliquot_tag": "ALQ_df64670e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04888.WXS.T C3L-04888 LSCC WXS tumor CPT0254190006 CPT0254190006.WholeExome.RP-1303.bam 29653630464 BAM submitted_aligned CPTAC3 efbee664-9b89-417f-99ed-d8c2708b2dca 48a89c463dd54cb1032feb3269ec1f4a {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04888.WXS.T.hg38 C3L-04888 LSCC WXS tumor CPT0254190006 c3b26a8b-5ea1-40f1-97c6-b5a07db8d558_wxs_gdc_realn.bam 40481112346 BAM harmonized CPTAC3 51236068-0f0b-4571-8213-68db8336a90e 04c3bed460bc6d1e8a9d009f8d6c6f93 {"aliquot_tag": "ALQ_a5b149dd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.MethArray.Green.A C3L-04889 LSCC Methylation_Array tissue_normal CPT0267700006 204372030087_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6fff97d1-1008-45d2-a713-51f038069983 db9734efa353c5c0c075e14d702be1c4 {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.MethArray.Green.T C3L-04889 LSCC Methylation_Array tumor CPT0267670006 204367490082_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d6e09eae-52f3-4e44-8b69-e2fa32937764 5368129c26f538ae8968e9415fbdd44f {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.MethArray.Red.A C3L-04889 LSCC Methylation_Array tissue_normal CPT0267700006 204372030087_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 6f66a507-3b1f-4f26-a29f-e650c4a8f4b4 b82b08a634d9f94698f8c986a028c613 {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.MethArray.Red.T C3L-04889 LSCC Methylation_Array tumor CPT0267670006 204367490082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 c89bf7e3-0394-4f74-b7b2-72911fe2e7bc ffce9d52f17e3f8e080c659f8df503a9 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.miRNA-Seq.A.hg38 C3L-04889 LSCC miRNA-Seq tissue_normal CPT0267700009 2083e07b-b411-4988-aabd-02d3ff33631a_mirnaseq_gdc_realn.bam 228887025 BAM harmonized CPTAC3 3886a057-c679-40f2-8535-f72fc45dd419 22bef25d33af31745008d5c2cf23348d {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.miRNA-Seq.S13_L006_R1.T C3L-04889 LSCC miRNA-Seq tumor CPT0267670009 200224_UNC31-K00269_0267_AHC722BBXY_AGTCAA_S13_L006_R1_001.unaln.bam 227953235 BAM S13_L006_R1 submitted_unaligned CPTAC3 2262edab-3d16-4cd8-8013-c39abe882f2d b681cef1e992b8eb1a67f657757304ac {"aliquot_tag": "ALQ_285cc7eb", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.miRNA-Seq.S4_L007_R1.A C3L-04889 LSCC miRNA-Seq tissue_normal CPT0267700009 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTTCC_S4_L007_R1_001.unaln.bam 204001591 BAM S4_L007_R1 submitted_unaligned CPTAC3 9de8bdef-1121-40b5-a804-4596cc33f565 689775963bed915061b28c000da9c9e3 {"aliquot_tag": "ALQ_5120c85e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.miRNA-Seq.T.hg38 C3L-04889 LSCC miRNA-Seq tumor CPT0267670009 eaf92313-9abf-46b5-bfda-6f1ca9a90a03_mirnaseq_gdc_realn.bam 248714832 BAM harmonized CPTAC3 2324052c-da43-4128-b89f-c5baa3b405f5 8be2a59dff8dd6590f70c01936fe71e8 {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.RNA-Seq.chimeric.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.chimeric.gdc_realn.bam 82907787 BAM chimeric harmonized CPTAC3 c4f91a75-91ca-4a19-ac2c-4d8272f7d0f2 4ab1d4731df5214d652ecca8ea006f7f {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.RNA-Seq.chimeric.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.chimeric.gdc_realn.bam 42889597 BAM chimeric harmonized CPTAC3 fae13732-d400-443a-9056-7f52ee5094a0 574d04ee0d80e077be54a196d3c5b3f3 {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.RNA-Seq.genomic.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.genomic.gdc_realn.bam 8071297089 BAM genomic harmonized CPTAC3 c5142e0e-d83f-46b4-8379-fe4b94920150 6932bf0444b24f6880f13b0cbd689ad4 {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.RNA-Seq.genomic.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.genomic.gdc_realn.bam 8227485803 BAM genomic harmonized CPTAC3 77d377b1-5c55-46cb-a043-c383c5354620 403bf9e723712936a3f09a22029a692e {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.RNA-Seq.S15_L004_R1.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R1_001.fastq.gz 4003967585 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 118ec532-9720-42b4-8294-d45af9626739 701cc2f7d5c5c4cf6ab5947e00827553 {"aliquot_tag": "ALQ_5120c85e", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.RNA-Seq.S15_L004_R2.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R2_001.fastq.gz 4410790939 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 729a5650-c170-412b-ab2f-8e93883b4eae c09143b47acef6eac82076b1600add9f {"aliquot_tag": "ALQ_5120c85e", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.RNA-Seq.S29_L008_R1.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R1_001.fastq.gz 3797742630 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 c87b369f-d2b6-46f4-bcca-290a7a5b8b08 6e13a5627d3879d56f35feb90380f796 {"aliquot_tag": "ALQ_285cc7eb", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.RNA-Seq.S29_L008_R2.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R2_001.fastq.gz 4104660907 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 324c04ab-2b75-4417-90c8-01debcd8df70 08f0a866d88b54eebdd7ae0a6e63addb {"aliquot_tag": "ALQ_285cc7eb", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.RNA-Seq.transcriptome.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.transcriptome.gdc_realn.bam 9814069627 BAM transcriptome harmonized CPTAC3 e2d8d9a4-a104-4707-9e1d-450077dec6e5 3ff2affdba7243f783fdf82f0873877c {"aliquot_tag": "ALQ_5120c85e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.RNA-Seq.transcriptome.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.transcriptome.gdc_realn.bam 10286490519 BAM transcriptome harmonized CPTAC3 08e99d5f-f8c2-4ebb-b43e-375abd60e795 23f7045a47bc7e95b4252ebb24c6efce {"aliquot_tag": "ALQ_285cc7eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.WGS.N C3L-04889 LSCC WGS blood_normal CPT0267790002 CPT0267790002.WholeGenome.RP-2158.bam 25689343028 BAM submitted_aligned CPTAC3 85fc8b87-8297-4e43-bdaf-3f5ed87c23a2 3f8d1a643b3465d730172a5f8ecdcb88 {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04889.WGS.N.hg38 C3L-04889 LSCC WGS blood_normal CPT0267790002 a53c2467-4e6f-4d84-a6b8-5c26eca640ca_wgs_gdc_realn.bam 75817414984 BAM harmonized CPTAC3 d5a6e3b7-70c9-49fa-a2a1-66a924932a1f b596742dc702a8679356c15ac5191616 {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04889.WGS.T C3L-04889 LSCC WGS tumor CPT0267670006 CPT0267670006.WholeGenome.RP-2158.bam 24753593308 BAM submitted_aligned CPTAC3 1911ae31-f68a-46e3-a610-e6e77e8fbcb1 3e086a549d9bfe576546fd7be9f8f1a7 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.WGS.T.hg38 C3L-04889 LSCC WGS tumor CPT0267670006 4bfb9da1-f676-4dbd-b71a-ef9a54bf2bb8_wgs_gdc_realn.bam 72875650257 BAM harmonized CPTAC3 247ecd00-dc1d-4d7f-815b-d53768c379b0 c98210e64d2465d4eb6255c734ed91c1 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.WXS.A C3L-04889 LSCC WXS tissue_normal CPT0267700006 CPT0267700006.WholeExome.RP-1303.bam 19215035059 BAM submitted_aligned CPTAC3 819bfe54-ef80-4c19-9a3e-40a26ecc9775 00a132a3f85b2011abe3a0ae07d93695 {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.WXS.A.hg38 C3L-04889 LSCC WXS tissue_normal CPT0267700006 9dc1ff97-a1ac-4c5d-b93b-0cc9c2233d91_wxs_gdc_realn.bam 25363547841 BAM harmonized CPTAC3 947dd89c-be7b-48ae-b91a-9d3cf6faad10 aa4e702507700e0b3e5afe00deff177a {"aliquot_tag": "ALQ_c19fd5cf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04889.WXS.N C3L-04889 LSCC WXS blood_normal CPT0267790002 CPT0267790002.WholeExome.RP-1303.bam 26975737133 BAM submitted_aligned CPTAC3 741d9ce6-034d-4c14-9599-5fb9e3e7c2d7 b5bb29ea590fcae52554e17947833c1c {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04889.WXS.N.hg38 C3L-04889 LSCC WXS blood_normal CPT0267790002 a53c2467-4e6f-4d84-a6b8-5c26eca640ca_wxs_gdc_realn.bam 36013048356 BAM harmonized CPTAC3 bd0c5d71-8603-4e53-a7a3-9edf4c20f86f a38e3ef643c97a7a2736bc67ae98ee18 {"aliquot_tag": "ALQ_cbe273a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04889.WXS.T C3L-04889 LSCC WXS tumor CPT0267670006 CPT0267670006.WholeExome.RP-1303.bam 23154056179 BAM submitted_aligned CPTAC3 486d04ac-def6-45e7-8b1b-5846c8534b96 ff4421b4610465f435b49d811c486a46 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04889.WXS.T.hg38 C3L-04889 LSCC WXS tumor CPT0267670006 4bfb9da1-f676-4dbd-b71a-ef9a54bf2bb8_wxs_gdc_realn.bam 31552221371 BAM harmonized CPTAC3 4cb79a61-672a-4937-aa86-72ecf8e3bced f224ec566b154833db2b6266272e2d78 {"aliquot_tag": "ALQ_b8e3da7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.MethArray.Green.A C3L-04912 LSCC Methylation_Array tissue_normal CPT0254400006 204372030085_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4f251616-9eef-499f-b264-6763300ae64c 8851ebed8e1742f25af87a462f12bc91 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.MethArray.Green.T C3L-04912 LSCC Methylation_Array tumor CPT0254350006 204372030079_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1b1d67cf-9806-434d-a56a-d389d924cc31 1a80073890b13a831794d847f0e98f9b {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.MethArray.Red.A C3L-04912 LSCC Methylation_Array tissue_normal CPT0254400006 204372030085_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 2b9b1ac4-1c7a-4e3a-90e2-a17486e31d15 5d8b248b29838015d2b0d64751155de1 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.MethArray.Red.T C3L-04912 LSCC Methylation_Array tumor CPT0254350006 204372030079_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 044345af-eef2-41cc-afd4-565d282f6ef5 279966cee856504c2f37394a639ee9fa {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.miRNA-Seq.A.hg38 C3L-04912 LSCC miRNA-Seq tissue_normal CPT0254400009 f5e30b7b-70e4-47a3-b654-51bd00144977_mirnaseq_gdc_realn.bam 294712586 BAM harmonized CPTAC3 5943f382-b99b-4c21-ba28-3ea24bf519f8 1a38d9872fec5cb04cd29c75d6c0e2c5 {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.miRNA-Seq.S23_L007_R1.A C3L-04912 LSCC miRNA-Seq tissue_normal CPT0254400009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TGACCA_S23_L007_R1_001.unaln.bam 261205736 BAM S23_L007_R1 submitted_unaligned CPTAC3 53b7acc9-abdc-43b5-913b-4bbec104f0b7 8fdcbe05ec7dd42d53770b0d99fc8263 {"aliquot_tag": "ALQ_68d3a78e", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.miRNA-Seq.S33_L007_R1.T C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 200224_UNC31-K00269_0267_AHC722BBXY_CAGGCG_S33_L007_R1_001.unaln.bam 153277532 BAM S33_L007_R1 submitted_unaligned CPTAC3 7ecb8141-2188-4a64-8ea5-e7ed6a20e1eb 2516c17faf8c4a463faff5b05bda6deb {"aliquot_tag": "ALQ_bd361846", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.miRNA-Seq.S4_L001_R1.T C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGGCG_S4_L001_R1_001.unaln.bam 168440443 BAM S4_L001_R1 submitted_unaligned CPTAC3 343f92d5-4124-4231-8700-92a3990424c7 823610fd9e03ab58452ad383975290d7 {"aliquot_tag": "ALQ_bd361846", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.miRNA-Seq.T.hg38 C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 dd47a243-a0b5-4e4a-8977-1875b9e9b01d_mirnaseq_gdc_realn.bam 374447994 BAM harmonized CPTAC3 492698b9-a9fd-4605-a1ac-4244e8db64c9 088f63b6e2b4e4c03fb622e4abf471b9 {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.RNA-Seq.chimeric.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.chimeric.gdc_realn.bam 72821669 BAM chimeric harmonized CPTAC3 a8d55603-6b05-4bf1-a4fa-0d0d31452cc5 6564ba5db6446c1270808eca594adcae {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.RNA-Seq.chimeric.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.chimeric.gdc_realn.bam 32012959 BAM chimeric harmonized CPTAC3 6bc734ac-7b80-4102-bb85-68ba95ad4ce3 e1676bd70b46350175c01230f80b1c23 {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.RNA-Seq.genomic.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.genomic.gdc_realn.bam 7656141607 BAM genomic harmonized CPTAC3 54bae130-2885-401f-81b0-4d7735049c6d d74152a6c9c40e4ffee8bba83efc650b {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.RNA-Seq.genomic.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.genomic.gdc_realn.bam 7168922861 BAM genomic harmonized CPTAC3 394a88fc-2410-4d15-a399-76cd0e6112d3 2e981a5e9b865f5aea905e7e0237722b {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.RNA-Seq.S1_L001_R1.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R1_001.fastq.gz 3436316001 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 f9770c9b-09a9-4df6-a6ea-edbdfeb60bf0 cd3fc82ada0f31d34446c244a647a7bd {"aliquot_tag": "ALQ_bd361846", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.RNA-Seq.S1_L001_R2.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R2_001.fastq.gz 3923198924 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 8b0cb2b2-bd84-4f90-a21c-42eb722d5545 da22980ee6135a1b2bdd625d9dd4bc44 {"aliquot_tag": "ALQ_bd361846", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.RNA-Seq.S4_L001_R1.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R1_001.fastq.gz 3587377683 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 036496c6-d921-4da0-a332-7c70a5475890 b5302feb5071433391d81d6630c38591 {"aliquot_tag": "ALQ_68d3a78e", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.RNA-Seq.S4_L001_R2.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R2_001.fastq.gz 4113520732 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 1a3fc70a-ecd1-45d6-a44d-cc124aafdbb3 f61f775c9972d616f108cf234e3f156b {"aliquot_tag": "ALQ_68d3a78e", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.RNA-Seq.transcriptome.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.transcriptome.gdc_realn.bam 9147088091 BAM transcriptome harmonized CPTAC3 7a8536ca-a5df-44d4-a320-f1a3d3b936a5 85eca8c7ee48ce9b8ff953b07ef51411 {"aliquot_tag": "ALQ_68d3a78e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.RNA-Seq.transcriptome.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.transcriptome.gdc_realn.bam 8986186648 BAM transcriptome harmonized CPTAC3 8a003023-3ebe-44a4-8d33-9fc021594afb e137c614fadda20210cd1b5eb12e05c6 {"aliquot_tag": "ALQ_bd361846", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.WGS.N C3L-04912 LSCC WGS blood_normal CPT0254490002 CPT0254490002.WholeGenome.RP-2158.bam 32121951882 BAM submitted_aligned CPTAC3 e80b8a5b-a8f3-47b0-ac58-23f3fc09c711 f85d8899c3d0b8b543119392deba95dc {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04912.WGS.N.hg38 C3L-04912 LSCC WGS blood_normal CPT0254490002 00c8e708-0b26-4993-a88c-77f89ee28cff_wgs_gdc_realn.bam 93877810004 BAM harmonized CPTAC3 7bcb216f-65c8-426f-8151-d03834b16ccb 62eb0710442958cb73445c8fa54b2e4e {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04912.WGS.T C3L-04912 LSCC WGS tumor CPT0254350006 CPT0254350006.WholeGenome.RP-2158.bam 24090676120 BAM submitted_aligned CPTAC3 35091386-0e2d-4abf-bebd-33426f47adf6 6b2aadb1ce1fe2f112a9ff4097009566 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.WGS.T.hg38 C3L-04912 LSCC WGS tumor CPT0254350006 1acb5add-1160-4bcb-8121-aad43a85ae38_wgs_gdc_realn.bam 72176061076 BAM harmonized CPTAC3 9e2f0f6f-9196-435a-ace9-917e80e5f254 b0f73ad975bd32ba103fe1aa4ab4da90 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.WXS.A C3L-04912 LSCC WXS tissue_normal CPT0254400006 CPT0254400006.WholeExome.RP-1303.bam 22048583718 BAM submitted_aligned CPTAC3 277193b6-c8cf-416d-8f50-50e52bea3fcd f7b993336122dd36baaea6f28db1d762 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.WXS.A.hg38 C3L-04912 LSCC WXS tissue_normal CPT0254400006 0ce3597d-5ef7-49bc-960a-1dadfd1a76e1_wxs_gdc_realn.bam 29726878799 BAM harmonized CPTAC3 ce80e545-8063-4a52-b9f6-027de2b3c908 47c9411f5e9c2fa2142c280431cb67c9 {"aliquot_tag": "ALQ_f86cba1f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04912.WXS.N C3L-04912 LSCC WXS blood_normal CPT0254490002 CPT0254490002.WholeExome.RP-1303.bam 24533875733 BAM submitted_aligned CPTAC3 2da1efb2-8d01-42b8-8585-d0a39b43f9d1 0c42980bb14128e2a17c15be5c61f97b {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04912.WXS.N.hg38 C3L-04912 LSCC WXS blood_normal CPT0254490002 00c8e708-0b26-4993-a88c-77f89ee28cff_wxs_gdc_realn.bam 33243564159 BAM harmonized CPTAC3 6888dd68-8130-44fe-a636-1e053a59637c 2a22459fffd4b8012f19dc6a770cfdff {"aliquot_tag": "ALQ_f2111c77", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04912.WXS.T C3L-04912 LSCC WXS tumor CPT0254350006 CPT0254350006.WholeExome.RP-1303.bam 22538882838 BAM submitted_aligned CPTAC3 1be982f5-b457-4df5-89d2-5d0a6c3f61eb 3fede06fdbb62ab72ea97c7b0efd0177 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04912.WXS.T.hg38 C3L-04912 LSCC WXS tumor CPT0254350006 1acb5add-1160-4bcb-8121-aad43a85ae38_wxs_gdc_realn.bam 31047128070 BAM harmonized CPTAC3 ca9a76bf-ba52-4ffb-a0ca-a23ee57bcc17 20f4207587b8fcd9babdc2865ae9ee28 {"aliquot_tag": "ALQ_2d8905d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.MethArray.Green.A C3L-04916 LSCC Methylation_Array tissue_normal CPT0253860006 204367470131_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 058cd2ee-9b4d-4068-bc34-0c32374884b2 1cbc8f9844c7a7622abba0e9e9d59707 {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.MethArray.Green.T C3L-04916 LSCC Methylation_Array tumor CPT0253820006 204367490056_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 0ffac867-20aa-416b-a009-bb73f4ed6a99 712a28bc097a94f14b237120958b6068 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.MethArray.Red.A C3L-04916 LSCC Methylation_Array tissue_normal CPT0253860006 204367470131_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 01fecba0-9698-48f1-ad88-9639a5821308 70c382ad4c296f76a6d0806876a9e760 {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.MethArray.Red.T C3L-04916 LSCC Methylation_Array tumor CPT0253820006 204367490056_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 db816541-f766-43aa-9bf1-dcc38b0670af 15aa15844c0e466fac41f088c6b8c322 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.miRNA-Seq.A.hg38 C3L-04916 LSCC miRNA-Seq tissue_normal CPT0253860009 bc73a744-bfc8-402c-b4f9-4f841397cec8_mirnaseq_gdc_realn.bam 244716330 BAM harmonized CPTAC3 0fc8227a-b774-499b-9d6f-8d9126748a9b 2ea3eca7a5153d4b92f02d4935b60302 {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.miRNA-Seq.S30_L007_R1.T C3L-04916 LSCC miRNA-Seq tumor CPT0253820009 200224_UNC31-K00269_0267_AHC722BBXY_CACCGG_S30_L007_R1_001.unaln.bam 193871673 BAM S30_L007_R1 submitted_unaligned CPTAC3 0904ad3f-cc9e-4a93-bfa6-79eaea1873bf c0545c72642711a28b0dd00a813aae87 {"aliquot_tag": "ALQ_a0760a1b", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.miRNA-Seq.S5_L007_R1.A C3L-04916 LSCC miRNA-Seq tissue_normal CPT0253860009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATCACG_S5_L007_R1_001.unaln.bam 218899294 BAM S5_L007_R1 submitted_unaligned CPTAC3 c0acae60-0cb4-4efd-9288-a20a6da094b8 3b2501e4479d35ce846ae0f9e63a6ab8 {"aliquot_tag": "ALQ_55f6acdb", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.miRNA-Seq.T.hg38 C3L-04916 LSCC miRNA-Seq tumor CPT0253820009 e39a35af-0a4c-4b34-9c98-161cdab47f17_mirnaseq_gdc_realn.bam 214894132 BAM harmonized CPTAC3 afc8adc7-e87e-46a1-8ec0-58ab9f3e72d2 83df8b4ea683e15642f5dd896151843a {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.RNA-Seq.chimeric.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.chimeric.gdc_realn.bam 86947610 BAM chimeric harmonized CPTAC3 cc0c4c82-297f-40eb-8d7d-51209146f777 dfa1525027f8b3cfa4904c00c3fe6585 {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.RNA-Seq.chimeric.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.chimeric.gdc_realn.bam 30583865 BAM chimeric harmonized CPTAC3 92014b85-caff-449f-b211-32fedbd0a2fb ffbe66fbfa7364b5b8eb7534ff2dfd57 {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.RNA-Seq.genomic.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.genomic.gdc_realn.bam 8719010305 BAM genomic harmonized CPTAC3 30b96c26-8d5b-46f2-b67e-f44aa90247e1 b73a683099d4bab51825c76f9915a1ea {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.RNA-Seq.genomic.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.genomic.gdc_realn.bam 7738383461 BAM genomic harmonized CPTAC3 cd418da1-6167-4741-9e2f-a0bc27f123e2 dac8a96fb33b92fa0178d5245a48b6a5 {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.RNA-Seq.S14_L004_R1.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R1_001.fastq.gz 3753245339 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 db28b53c-8f86-46dd-b62b-989f8909d92e 16952691e0dcd8c975a2c9a7ff1fe3ff {"aliquot_tag": "ALQ_a0760a1b", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.RNA-Seq.S14_L004_R2.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R2_001.fastq.gz 4043813321 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 f7f37873-fe64-4257-8d45-c77aa913b746 5ffa67307f39209ba7885bea7bd723dc {"aliquot_tag": "ALQ_a0760a1b", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.RNA-Seq.S2_L001_R1.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R1_001.fastq.gz 4247172933 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 b67de956-fe78-45f8-8813-35042c29c81b 1623dc8cad427495ded52e7229f2c9d8 {"aliquot_tag": "ALQ_55f6acdb", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.RNA-Seq.S2_L001_R2.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R2_001.fastq.gz 4773647924 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 9370ba3d-5ec0-49b8-abc8-2efa8fa4644f aed9037ead72a286a74a1e2b78831212 {"aliquot_tag": "ALQ_55f6acdb", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.RNA-Seq.transcriptome.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.transcriptome.gdc_realn.bam 11032579609 BAM transcriptome harmonized CPTAC3 c81118bb-5c33-4fac-a41c-2eed3d9988aa f3dc5cd0dcceadcb43dad536c77e0790 {"aliquot_tag": "ALQ_55f6acdb", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.RNA-Seq.transcriptome.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.transcriptome.gdc_realn.bam 11133351417 BAM transcriptome harmonized CPTAC3 2e194f18-7c9d-4645-b916-3bce8c405e1a e3ba495520afd866651e44c0769bfca0 {"aliquot_tag": "ALQ_a0760a1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.WGS.N C3L-04916 LSCC WGS blood_normal CPT0253950002 CPT0253950002.WholeGenome.RP-2158.bam 27211685550 BAM submitted_aligned CPTAC3 64f33867-6b66-4106-b028-84200d62ffe3 d40c95c7b24f1e5aa0d4b1d077264f66 {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04916.WGS.N.hg38 C3L-04916 LSCC WGS blood_normal CPT0253950002 19045df1-920b-4394-9a2c-7efac1afdbce_wgs_gdc_realn.bam 83404250762 BAM harmonized CPTAC3 0c3c18a9-693d-4d7c-811e-43a69ccb9861 6219f8552a4819e0e11e6623780b8b6e {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04916.WGS.T C3L-04916 LSCC WGS tumor CPT0253820006 CPT0253820006.WholeGenome.RP-2158.bam 23192852802 BAM submitted_aligned CPTAC3 a31bba1d-0dd8-4405-a947-63f8798dad8e 16b04c6b2a69d0b9e1df2d89638ddbf5 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.WGS.T.hg38 C3L-04916 LSCC WGS tumor CPT0253820006 fd157e5a-efff-4dbc-9fcb-41a6355a4016_wgs_gdc_realn.bam 69638483654 BAM harmonized CPTAC3 d7cd46cd-09c5-4e20-9e40-bc70e8caaf92 a2dcba242fd272fbf54e4ef9c718bddc {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.WXS.A C3L-04916 LSCC WXS tissue_normal CPT0253860006 CPT0253860006.WholeExome.RP-1303.bam 23372757396 BAM submitted_aligned CPTAC3 69362b88-851a-412a-8687-5263ed8b44d8 2e6415c00a19c347a83184ed930f059b {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.WXS.A.hg38 C3L-04916 LSCC WXS tissue_normal CPT0253860006 46fa63f7-e7ea-4fb4-ab4b-864ad6321c04_wxs_gdc_realn.bam 32214037111 BAM harmonized CPTAC3 36cbd5d4-c79c-4b32-ba2f-ef99d43ece92 819516e1316b5b666b91a126d2d4fbe9 {"aliquot_tag": "ALQ_c549b14a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04916.WXS.N C3L-04916 LSCC WXS blood_normal CPT0253950002 CPT0253950002.WholeExome.RP-1303.bam 28394706546 BAM submitted_aligned CPTAC3 a74f2836-c0f0-4731-af06-0aea9298e166 4138e4a9494f341ed263a2e172a16601 {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04916.WXS.N.hg38 C3L-04916 LSCC WXS blood_normal CPT0253950002 19045df1-920b-4394-9a2c-7efac1afdbce_wxs_gdc_realn.bam 38762395045 BAM harmonized CPTAC3 c3b89dbf-4970-49de-830f-8fd51091bdee 7205f65f059f0ad90bb631ec8e3a8fce {"aliquot_tag": "ALQ_4ed8dc26", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04916.WXS.T C3L-04916 LSCC WXS tumor CPT0253820006 CPT0253820006.WholeExome.RP-1303.bam 23094598277 BAM submitted_aligned CPTAC3 1fcbdeb9-8e3b-4179-a100-fdf28e89906c 9f3e697681b66a2522c2559b8922b06c {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04916.WXS.T.hg38 C3L-04916 LSCC WXS tumor CPT0253820006 fd157e5a-efff-4dbc-9fcb-41a6355a4016_wxs_gdc_realn.bam 31464608931 BAM harmonized CPTAC3 eaf60ce5-1c03-4e78-893c-e6f9eb396715 3a0dc3474c18940ab7b3409d522d62a2 {"aliquot_tag": "ALQ_30c9178a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.MethArray.Green.A C3L-04921 LSCC Methylation_Array tissue_normal CPT0252770009 204367470131_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 a67ce6e7-261f-425c-b992-bebf72aaca64 25e3d98d48f4f15d373e7abea96775cc {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.MethArray.Green.T C3L-04921 LSCC Methylation_Array tumor CPT0252750006 204372030011_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 11530570-cad9-4d22-8ae9-953597ab52b9 3d45600c2d2b28353765eda07c61f08d {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.MethArray.Red.A C3L-04921 LSCC Methylation_Array tissue_normal CPT0252770009 204367470131_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 02160c12-5bbd-45a7-b774-360d980df290 0e1b37758cd380602091335f4754588d {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.MethArray.Red.T C3L-04921 LSCC Methylation_Array tumor CPT0252750006 204372030011_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 05413ff9-be16-4ca3-bfa8-5507e3590c39 d0391761d62cb8f07d7142aafb76d300 {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.miRNA-Seq.A.hg38 C3L-04921 LSCC miRNA-Seq tissue_normal CPT0252770006 55c05fa7-1b33-4ce6-afbe-dfde2fe7d6f5_mirnaseq_gdc_realn.bam 202404036 BAM harmonized CPTAC3 16058bfc-17bd-417b-a01a-594c1daad293 97a549f2c9f708db677e4c9e7beb324c {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.miRNA-Seq.S16_L001_R1.T C3L-04921 LSCC miRNA-Seq tumor CPT0252750013 200325_UNC31-K00269_0272_AHHC2NBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 168810704 BAM S16_L001_R1 submitted_unaligned CPTAC3 2e31a7c2-f5ce-465b-adb5-61bb7cfce6ff e11e1095220d27564356c1fc5437d249 {"aliquot_tag": "ALQ_bcb9b735", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.miRNA-Seq.S40_L006_R1.A C3L-04921 LSCC miRNA-Seq tissue_normal CPT0252770006 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTCAGA_S40_L006_R1_001.unaln.bam 179834472 BAM S40_L006_R1 submitted_unaligned CPTAC3 4b248c48-d029-473e-bf14-a93efe4a7eb7 881171039011fe6046c558c23839c1db {"aliquot_tag": "ALQ_af08219b", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.miRNA-Seq.T.hg38 C3L-04921 LSCC miRNA-Seq tumor CPT0252750013 d736bee0-7cf3-4d03-a840-3e8f35074d67_mirnaseq_gdc_realn.bam 183859694 BAM harmonized CPTAC3 678b5cc6-0d79-49f4-8f52-e15b81f9aedf 8df9e3f2bcf12707d65fc9867e26014b {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.RNA-Seq.chimeric.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.chimeric.gdc_realn.bam 34824789 BAM chimeric harmonized CPTAC3 c0eacd83-87e7-4559-8970-6fa3b14d38b9 39e604750dbc2c4720641f76f3ffeab9 {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.RNA-Seq.chimeric.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.chimeric.gdc_realn.bam 68738103 BAM chimeric harmonized CPTAC3 8111320a-dc1a-495b-a800-025a8c966cf4 8605f3fa64a9feac9b02c47bef8f419e {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.RNA-Seq.genomic.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.genomic.gdc_realn.bam 9277471277 BAM genomic harmonized CPTAC3 d0cf93b0-730f-4d3c-9617-c2cea29702ec d1cb6a647a72204a5622d65a73acdff3 {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.RNA-Seq.genomic.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.genomic.gdc_realn.bam 7619258910 BAM genomic harmonized CPTAC3 c0d36be2-2d39-4c6f-a5bf-5ff4d30f2497 b3dcf0eda013e3e449810e8716676fff {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.RNA-Seq.S21_L006_R1.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R1_001.fastq.gz 4162750082 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 a90e194a-4b94-4312-a3f4-69ac0c520e90 199b6300fb45c0a4edc93e6a6c9ba109 {"aliquot_tag": "ALQ_af08219b", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.RNA-Seq.S21_L006_R2.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R2_001.fastq.gz 5149041292 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 242152e6-2216-45db-a8a3-df068b26d22f 27ce5bebfba9323318cd1651680c35d4 {"aliquot_tag": "ALQ_af08219b", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.RNA-Seq.S24_L006_R1.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 3672634106 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 4ed05607-7dec-4e7e-86c3-01b85e9c96e4 c487a79b13192a7ac62347d46feaa249 {"aliquot_tag": "ALQ_bcb9b735", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.RNA-Seq.S24_L006_R2.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 3857705611 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 079c546b-c03b-4638-8cea-0d3fb3b6326c ba02468840987eaf2c07ce223970289f {"aliquot_tag": "ALQ_bcb9b735", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.RNA-Seq.transcriptome.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.transcriptome.gdc_realn.bam 10875089529 BAM transcriptome harmonized CPTAC3 36371255-7cbc-4811-9d5e-53125d8daee5 219862b061c904f73d15611e5cecb0d3 {"aliquot_tag": "ALQ_af08219b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.RNA-Seq.transcriptome.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.transcriptome.gdc_realn.bam 10123207158 BAM transcriptome harmonized CPTAC3 703241da-ea9d-4c77-ae25-254873e5e979 140cdda81b16b365df0b8ec95746c729 {"aliquot_tag": "ALQ_bcb9b735", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.WGS.N C3L-04921 LSCC WGS blood_normal CPT0252880002 CPT0252880002.WholeGenome.RP-2158.bam 21698223377 BAM submitted_aligned CPTAC3 5e234217-beb3-4049-a5de-019d6994afa0 6b5c9c2ac5023985670ce7c2acc34f05 {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04921.WGS.N.hg38 C3L-04921 LSCC WGS blood_normal CPT0252880002 bc1c32a3-372a-45bf-a6bd-1374ff7922fb_wgs_gdc_realn.bam 64859253722 BAM harmonized CPTAC3 e666531d-597f-4ea1-8ebb-96f4d3cc4ade e91b39cfbdbb357d059b8cd51b14c15a {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04921.WGS.T C3L-04921 LSCC WGS tumor CPT0252750006 CPT0252750006.WholeGenome.RP-2158.bam 29474446084 BAM submitted_aligned CPTAC3 2a0ab715-a72e-4dae-8806-807f0b13f613 9a69942825ad93b93bd1547d5fe664c2 {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.WGS.T.hg38 C3L-04921 LSCC WGS tumor CPT0252750006 2437fa18-5a93-4db0-b3ae-08396dc784d9_wgs_gdc_realn.bam 87060632436 BAM harmonized CPTAC3 4344ed3f-54ff-422a-8362-6ecbc704951b 435030b366c0e2919c0b65bfec96076f {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.WXS.A C3L-04921 LSCC WXS tissue_normal CPT0252770009 CPT0252770009.WholeExome.RP-1303.bam 25680271224 BAM submitted_aligned CPTAC3 98c21908-2f64-4fbc-8d5a-1a9b7b2dc29d 43d65b341e14362176a63c07a4d74e86 {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.WXS.A.hg38 C3L-04921 LSCC WXS tissue_normal CPT0252770009 ed274b8c-b612-4f24-acb4-5e1f928db596_wxs_gdc_realn.bam 35308060620 BAM harmonized CPTAC3 55e43148-2e46-4b6d-9d22-b10aa1ef1ebd ab282814927dd166ebbda6c02e27a84e {"aliquot_tag": "ALQ_3fb73c0a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04921.WXS.N C3L-04921 LSCC WXS blood_normal CPT0252880002 CPT0252880002.WholeExome.RP-1303.bam 26037100352 BAM submitted_aligned CPTAC3 ac2cfa3b-7d1f-4123-bd04-2aac87168bbd 4e3fb07f10cb68904707aa94acd0f172 {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04921.WXS.N.hg38 C3L-04921 LSCC WXS blood_normal CPT0252880002 bc1c32a3-372a-45bf-a6bd-1374ff7922fb_wxs_gdc_realn.bam 35429165771 BAM harmonized CPTAC3 7f6409db-1a09-4284-9354-e412f210c7e7 dd9b0bdc3b1536d8405eeba879d03e05 {"aliquot_tag": "ALQ_db63c086", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04921.WXS.T C3L-04921 LSCC WXS tumor CPT0252750006 CPT0252750006.WholeExome.RP-1303.bam 34993491158 BAM submitted_aligned CPTAC3 6876b181-7c0d-42c9-a45d-2680b9dc61fd 05cca6868cff270745b781fc47b1c876 {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04921.WXS.T.hg38 C3L-04921 LSCC WXS tumor CPT0252750006 2437fa18-5a93-4db0-b3ae-08396dc784d9_wxs_gdc_realn.bam 48592902174 BAM harmonized CPTAC3 2393913f-d773-4759-8438-eeef2c2b87a8 0d1a1bc2d9fd4aad9018f87554a5917b {"aliquot_tag": "ALQ_d5c872fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.MethArray.Green.A C3L-04922 LSCC Methylation_Array tissue_normal CPT0254030006 204367490082_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e38dd1f8-4439-4387-ab71-28eda4c8eaeb b0404b22a8539a0ca198f279a3ea9a98 {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.MethArray.Green.T C3L-04922 LSCC Methylation_Array tumor CPT0254010006 204367490093_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3134e037-739a-43ec-a261-4260c8031321 9dae13d58916a96766b5159868559098 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.MethArray.Red.A C3L-04922 LSCC Methylation_Array tissue_normal CPT0254030006 204367490082_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 1418ae93-39ad-48c5-b42d-06f5568c6b27 a0763b7beb352032cd5c9c7242448f0c {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.MethArray.Red.T C3L-04922 LSCC Methylation_Array tumor CPT0254010006 204367490093_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 0234b349-6d84-4c8b-8879-e853bed8c32a 81ddc5d7cc0e1bf13ba27d1c0ea287e3 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.miRNA-Seq.A.hg38 C3L-04922 LSCC miRNA-Seq tissue_normal CPT0254030009 eaa5d6c2-d828-470a-887e-0082f7752891_mirnaseq_gdc_realn.bam 295487736 BAM harmonized CPTAC3 6c6be620-75b8-4c03-b2d0-4d5bf90cd4ad 6ee569b15a9837187f9ed1b4386a7016 {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.miRNA-Seq.S31_L007_R1.T C3L-04922 LSCC miRNA-Seq tumor CPT0254010009 200224_UNC31-K00269_0267_AHC722BBXY_CACGAT_S31_L007_R1_001.unaln.bam 257275759 BAM S31_L007_R1 submitted_unaligned CPTAC3 41a2e164-6e29-4370-a814-a85950523016 f34c293cd35f95814b6511a6d5ce0d06 {"aliquot_tag": "ALQ_ce22cc28", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.miRNA-Seq.S9_L007_R1.A C3L-04922 LSCC miRNA-Seq tissue_normal CPT0254030009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGATGT_S9_L007_R1_001.unaln.bam 264992137 BAM S9_L007_R1 submitted_unaligned CPTAC3 cecc7fb7-152e-4f3d-a48d-93c2532beafa e997b479d644c6e41681d27121e8d297 {"aliquot_tag": "ALQ_b4e29f48", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.miRNA-Seq.T.hg38 C3L-04922 LSCC miRNA-Seq tumor CPT0254010009 6bc88405-3f2d-4a2f-b407-b320cdf48cec_mirnaseq_gdc_realn.bam 286934142 BAM harmonized CPTAC3 6e51edd3-7e9b-4358-97f9-619b662c0fa0 19e96e5a5870cee2248b3b402134000a {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.RNA-Seq.chimeric.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.chimeric.gdc_realn.bam 94954220 BAM chimeric harmonized CPTAC3 3214a79b-0bbd-47ae-ad2f-0ce2df6ee7de 74d09ddf9d2ffd17c80b01c7cb9f9983 {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.RNA-Seq.chimeric.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.chimeric.gdc_realn.bam 32128014 BAM chimeric harmonized CPTAC3 6b3a26db-5cb4-4a31-b59f-308a29b89e0a b78f31a548827fe1925732fa6c186d8a {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.RNA-Seq.genomic.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.genomic.gdc_realn.bam 8462284525 BAM genomic harmonized CPTAC3 07db0c52-a825-48fc-bbc8-9e4ec205f684 18550540a7369102c1f3075d03a681ff {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.RNA-Seq.genomic.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.genomic.gdc_realn.bam 7672123946 BAM genomic harmonized CPTAC3 8eeb5f5e-e039-465a-9db1-a50c4683b67a fa909e7922fc6ec56890a9da4ed293f1 {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.RNA-Seq.S15_L004_R1.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3578547939 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 47f8b8c4-4dc0-41d8-a0bc-b943d8ecaaed 83477b0ca4d550518e61872e53096262 {"aliquot_tag": "ALQ_ce22cc28", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.RNA-Seq.S15_L004_R2.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 3904371477 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 0ab6b521-f980-4560-8c83-39e7d958f5ba d224f663d144f836be733959637b0393 {"aliquot_tag": "ALQ_ce22cc28", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.RNA-Seq.S3_L001_R1.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R1_001.fastq.gz 3975133314 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 88c980d2-f9dd-4f81-bb9f-6907d229b055 af91ba8a17cf26af322578586d367cb1 {"aliquot_tag": "ALQ_b4e29f48", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.RNA-Seq.S3_L001_R2.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R2_001.fastq.gz 4482970352 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 80027f20-5747-4f1a-84c7-efe9ef7d3bfd c6ab63e37e2b48b74cbe3321e3c95eba {"aliquot_tag": "ALQ_b4e29f48", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.RNA-Seq.transcriptome.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.transcriptome.gdc_realn.bam 10122572278 BAM transcriptome harmonized CPTAC3 decda37d-69c9-40c2-82bd-144eed2b4e77 aa7679da65b3a4210789a939784ba2af {"aliquot_tag": "ALQ_b4e29f48", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.RNA-Seq.transcriptome.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.transcriptome.gdc_realn.bam 10644879199 BAM transcriptome harmonized CPTAC3 2bbb657a-67ab-4792-aa35-a049980e7607 16ebd20c96babc714256617c9e0a6e5f {"aliquot_tag": "ALQ_ce22cc28", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.WGS.N C3L-04922 LSCC WGS blood_normal CPT0254130002 CPT0254130002.WholeGenome.RP-2158.bam 27961183031 BAM submitted_aligned CPTAC3 414cfcca-07d1-4f9f-b9b4-a2d182329812 5c958d6a855f85463e7dd29a3c419582 {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04922.WGS.N.hg38 C3L-04922 LSCC WGS blood_normal CPT0254130002 23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wgs_gdc_realn.bam 84359189370 BAM harmonized CPTAC3 23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5 881a0ea44ee61a0dbb869c52f76560f5 {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04922.WGS.T C3L-04922 LSCC WGS tumor CPT0254010006 CPT0254010006.WholeGenome.RP-2158.bam 27440633992 BAM submitted_aligned CPTAC3 fb552bf8-b4b5-44e6-a542-8b106c32a66f 5bdf959641b5c574f7c8574d3254370f {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.WGS.T.hg38 C3L-04922 LSCC WGS tumor CPT0254010006 d0cab13b-f2df-4901-97cd-7a8556661410_wgs_gdc_realn.bam 80665752293 BAM harmonized CPTAC3 d3898ded-3f45-4fd3-bb20-c7a9e84aebf6 a5ac06b8a0581312d6351840aea32994 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.WXS.A C3L-04922 LSCC WXS tissue_normal CPT0254030006 CPT0254030006.WholeExome.RP-1303.bam 22611964465 BAM submitted_aligned CPTAC3 54735bc5-dec0-4ef4-af07-24db22fb397f 97cc42a0bc1f2d50bf1c0492a9e3f8b1 {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.WXS.A.hg38 C3L-04922 LSCC WXS tissue_normal CPT0254030006 e0d1ae7e-513c-4963-ae0d-7011ea5a4920_wxs_gdc_realn.bam 30528625649 BAM harmonized CPTAC3 171ac5ac-d0cf-42de-80c2-9a272b993431 41e3c552468119aae234190cd187197d {"aliquot_tag": "ALQ_245d82d9", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04922.WXS.N C3L-04922 LSCC WXS blood_normal CPT0254130002 CPT0254130002.WholeExome.RP-1303.bam 26999676590 BAM submitted_aligned CPTAC3 502a8081-e150-4590-be4d-226fc5e6b13d 888c11f46898e2812cb87b33584f876e {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04922.WXS.N.hg38 C3L-04922 LSCC WXS blood_normal CPT0254130002 23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wxs_gdc_realn.bam 36992373803 BAM harmonized CPTAC3 72c93155-cbfc-4453-9c3f-05b04b32935d 55b115f9a688d9e30be30785d38545e4 {"aliquot_tag": "ALQ_e86c9565", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-04922.WXS.T C3L-04922 LSCC WXS tumor CPT0254010006 CPT0254010006.WholeExome.RP-1303.bam 21149593006 BAM submitted_aligned CPTAC3 5ee82b78-3b25-43b9-934f-f09b83b82c2b abc4ec87ab0f0e94ee9da2bdef2b2058 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04922.WXS.T.hg38 C3L-04922 LSCC WXS tumor CPT0254010006 d0cab13b-f2df-4901-97cd-7a8556661410_wxs_gdc_realn.bam 29686913321 BAM harmonized CPTAC3 a12611f3-1505-4479-b57a-961a4ed7b069 b6d0be0a3bba92b637d381ce10df7e69 {"aliquot_tag": "ALQ_5e9dd1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04971.MethArray.Green.Tpb C3L-04971 AML Methylation_Array tumor_peripheral_blood CPT0339330002 205987780101_R05C01_Grn.idat 13677887 IDAT Green NA CPTAC3 d91ec359-84fd-4dc6-8f19-4856e62dd40a c8303bda4e4fe1508361bfab9c89757f {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.MethArray.Red.Tpb C3L-04971 AML Methylation_Array tumor_peripheral_blood CPT0339330002 205987780101_R05C01_Red.idat 13677887 IDAT Red NA CPTAC3 5c0e76d6-072a-4936-accd-6b6c8c1e3039 79f900994aa6e43f96ce28ba887bdec6 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.miRNA-Seq.S19_L001_R1.Tpb C3L-04971 AML miRNA-Seq tumor_peripheral_blood CPT0339340002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCCCGA_S19_L001_R1_001.unaln.bam 241802022 BAM S19_L001_R1 submitted_unaligned CPTAC3 3c1fae86-3aa3-4cc6-89d3-1def56b9c932 123fc7250e667798782131fc2f0e16b0 {"aliquot_tag": "ALQ_a747947a", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.miRNA-Seq.Tpb.hg38 C3L-04971 AML miRNA-Seq tumor_peripheral_blood CPT0339340002 0b45deac-fcc3-4fa1-9f1f-a845307e57d9_mirnaseq_gdc_realn.bam 259184628 BAM harmonized CPTAC3 fa5e86ae-3ca0-4199-87a9-abdbd9c12975 405747118c01e05036a89769f6c0d6ab {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.RNA-Seq.chimeric.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.chimeric.gdc_realn.bam 618559213 BAM chimeric harmonized CPTAC3 e594709a-947d-4563-a0de-b933597ee5aa 690b424d79adaba770751cfd2b6db51b {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.RNA-Seq.genomic.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.genomic.gdc_realn.bam 9739276635 BAM genomic harmonized CPTAC3 60b3e86c-c959-4c54-9923-c81ce857a58c 0d57cff883b9fe457eb7aeb08fb0de83 {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.RNA-Seq.S21_L006_R1.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 4148351491 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 d99c1f34-fb81-4eb9-a7cd-6633b8503c48 07d98f8b7cd9d0b5fd9eeb8b02aeffd7 {"aliquot_tag": "ALQ_a747947a", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.RNA-Seq.S21_L006_R2.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 4540860364 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 b75f533d-4b00-472f-840b-75cd60a4db83 249cfc89d3ada95052b2a46ac0eec5ee {"aliquot_tag": "ALQ_a747947a", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.RNA-Seq.transcriptome.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.transcriptome.gdc_realn.bam 7496675086 BAM transcriptome harmonized CPTAC3 81c7e221-82bc-4c63-8e16-ec184010b494 3e32481a72f9b92059d9c0289372c655 {"aliquot_tag": "ALQ_a747947a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.WGS.Tpb C3L-04971 AML WGS tumor_peripheral_blood CPT0339330002 CPT0339330002.WholeGenome.RP-2158.bam 45545990165 BAM submitted_aligned CPTAC3 85b80bc0-77af-412c-80a7-e6044d650596 2a76cbb77d0fda0b54105980e656e7b1 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.WGS.Tpb.hg38 C3L-04971 AML WGS tumor_peripheral_blood CPT0339330002 d5f7901c-319d-49a5-b8f2-4053c2ba66dd_wgs_gdc_realn.bam 396291947475 BAM harmonized CPTAC3 6119cb98-af0c-48a7-836b-2751bfee338c 66ed236c55d0b8c9e708f4d988d390c6 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.WXS.Nbc C3L-04971 AML WXS buccal_normal CPT0343350004 CPT0343350004.WholeExome.RP-1303.bam 28793076892 BAM submitted_aligned CPTAC3 a161b7c2-54fc-45c6-8b80-1643628529cc 9c2b31e5fc40a82fd863b505c0789fe3 {"aliquot_tag": "ALQ_ddf14ea8", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04971.WXS.Nbc.hg38 C3L-04971 AML WXS buccal_normal CPT0343350004 43f033f3-42d5-45ea-b9d2-4e9fb45232c4_wxs_gdc_realn.bam 40092493994 BAM harmonized CPTAC3 8af4c3fd-04fd-4e76-bfee-67bb4a62d215 c5d26247def12b3509219b7ac8e19ba3 {"aliquot_tag": "ALQ_ddf14ea8", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04971.WXS.Tpb C3L-04971 AML WXS tumor_peripheral_blood CPT0339330002 CPT0339330002.WholeExome.RP-1303.bam 34364846930 BAM submitted_aligned CPTAC3 b997890d-3f4f-42c1-b004-277e5a49c9f0 b877f3a4efdf075848c772aadfbfac67 {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04971.WXS.Tpb.hg38 C3L-04971 AML WXS tumor_peripheral_blood CPT0339330002 d5f7901c-319d-49a5-b8f2-4053c2ba66dd_wxs_gdc_realn.bam 48003722608 BAM harmonized CPTAC3 7b8cbab0-baaf-420c-8328-9ed0c99b09ea bb29a64a8d9b27518e83909390d74fee {"aliquot_tag": "ALQ_1567486a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-04976.MethArray.Green.Tpb C3L-04976 AML Methylation_Array tumor_peripheral_blood CPT0340440002 205987780101_R04C01_Grn.idat 13677888 IDAT Green NA CPTAC3 8b487bc9-bb65-4c0a-bef0-9e115ce26b02 11d4467948c09ebd66e171fa63254562 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.MethArray.Red.Tpb C3L-04976 AML Methylation_Array tumor_peripheral_blood CPT0340440002 205987780101_R04C01_Red.idat 13677888 IDAT Red NA CPTAC3 20abb0c4-846b-4d2b-bc58-05d7045482a6 c03e89eef804ba16a57babac4c5c572a {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.miRNA-Seq.S9_L004_R1.Tpb C3L-04976 AML miRNA-Seq tumor_peripheral_blood CPT0340450002 220505_UNC32-K00270_0319_AHMV2KBBXY_CATGGC_S9_L004_R1_001.unaln.bam 197974102 BAM S9_L004_R1 submitted_unaligned CPTAC3 4bc495d3-921d-44ad-9cc2-607be6db51d0 1c6e3d6baff267b053bc64bc29581d33 {"aliquot_tag": "ALQ_187fc1b8", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.miRNA-Seq.Tpb.hg38 C3L-04976 AML miRNA-Seq tumor_peripheral_blood CPT0340450002 d6156a78-b7e4-4ff9-8e27-62251b99c795_mirnaseq_gdc_realn.bam 216913332 BAM harmonized CPTAC3 ff0202ec-df3c-4a78-8840-0d1c76adcf6d 4d3627ffb31caa8d4bf445acc5f28f4f {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.RNA-Seq.chimeric.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.chimeric.gdc_realn.bam 438798821 BAM chimeric harmonized CPTAC3 ff36c299-c0fc-4f2e-a1b0-ed692460a4d0 2ab1eb2a1b7b42405e883bab30394064 {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.RNA-Seq.genomic.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.genomic.gdc_realn.bam 7734574249 BAM genomic harmonized CPTAC3 cf590f02-6863-4801-99e6-8f7f57f8eeec 9c39b9c1c19ab22b73d555ac1cd56d81 {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.RNA-Seq.S27_L007_R1.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R1_001.fastq.gz 3833175431 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2 12397874d652455e4c389a6b820491d9 {"aliquot_tag": "ALQ_187fc1b8", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.RNA-Seq.S27_L007_R2.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R2_001.fastq.gz 4120847331 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 05cced7e-a63b-4b94-a784-1c918fb8fa37 e3c4042158cb0ae18db814e8d46bae9f {"aliquot_tag": "ALQ_187fc1b8", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.RNA-Seq.transcriptome.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.transcriptome.gdc_realn.bam 9202305720 BAM transcriptome harmonized CPTAC3 8646852d-f933-4eae-a230-ecd46b73c15e 5e6b938d3dfc94f4e13ab9bc2fff6ee1 {"aliquot_tag": "ALQ_187fc1b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.WGS.Tpb C3L-04976 AML WGS tumor_peripheral_blood CPT0340440002 CPT0340440002.WholeGenome.RP-2158.bam 48842235022 BAM submitted_aligned CPTAC3 d738a572-2f8d-458d-8e89-f96782ff4550 6ee412053e29bb290a3e259c1c599a6d {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.WGS.Tpb.hg38 C3L-04976 AML WGS tumor_peripheral_blood CPT0340440002 688a7f1f-fd4e-48b0-8f6b-efa006ad465a_wgs_gdc_realn.bam 147881432523 BAM harmonized CPTAC3 21cb1a80-0867-4877-8198-f3c83b1710cb 706f515abb5c7b4551189e5fe4893676 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.WXS.Nbc C3L-04976 AML WXS buccal_normal CPT0340410004 CPT0340410004.WholeExome.RP-1303.bam 18430426422 BAM submitted_aligned CPTAC3 55a21e1d-93ba-4396-ac8b-b732c9e7bd18 d7186dd855d6471eb2093fb2e22a303a {"aliquot_tag": "ALQ_49cc24d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-04976.WXS.Nbc.hg38 C3L-04976 AML WXS buccal_normal CPT0340410004 b3d4bb03-7ba4-4dcf-8598-4359592394a2_wxs_gdc_realn.bam 25647276561 BAM harmonized CPTAC3 c7f73644-7904-417e-a93c-ce6d8158663c 8748c21c2de7e7f29a2317dd3ed12eb6 {"aliquot_tag": "ALQ_49cc24d", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-04976.WXS.Tpb C3L-04976 AML WXS tumor_peripheral_blood CPT0340440002 CPT0340440002.WholeExome.RP-1303.bam 27947904385 BAM submitted_aligned CPTAC3 41225e8c-849b-4ed4-8890-51871a404702 35418eecc6fee933bd1a1d58ebcd6063 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-04976.WXS.Tpb.hg38 C3L-04976 AML WXS tumor_peripheral_blood CPT0340440002 688a7f1f-fd4e-48b0-8f6b-efa006ad465a_wxs_gdc_realn.bam 38770748836 BAM harmonized CPTAC3 7a88bcb3-8db3-4533-a9ff-45f6c13a6a73 2bfa50239ca30893e18f7095e7e00587 {"aliquot_tag": "ALQ_251fe808", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05020.MethArray.Green.A C3L-05020 LSCC Methylation_Array tissue_normal CPT0262510006 204367490084_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a921e42c-1f0e-4c21-9a76-34ca2d235422 4b86be7e157ed4dce027acd6ce132251 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.MethArray.Green.T C3L-05020 LSCC Methylation_Array tumor CPT0262460006 204372030074_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 77f14ecd-ed1e-41af-b306-e9d589865aba cf59448bbe5a213f000f6cea2e7c2257 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.MethArray.Red.A C3L-05020 LSCC Methylation_Array tissue_normal CPT0262510006 204367490084_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 1e3bf5c0-86ca-4133-b5ec-f335899c6b76 b76920e92379d6a83ce976102f03d636 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.MethArray.Red.T C3L-05020 LSCC Methylation_Array tumor CPT0262460006 204372030074_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 69fbc2e0-00bf-4bd6-ac7b-fb47cb1af225 be8280b630cec377995015cd121cae44 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.miRNA-Seq.A.hg38 C3L-05020 LSCC miRNA-Seq tissue_normal CPT0262510009 02449727-14fd-4a39-8708-c8022e46721e_mirnaseq_gdc_realn.bam 274033428 BAM harmonized CPTAC3 e89744a0-b737-43fc-8e8b-7df52dbca536 4440dbe049845a173d25ac2ecdb4bb9e {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.miRNA-Seq.S15_L008_R1.T C3L-05020 LSCC miRNA-Seq tumor CPT0262460009 200224_UNC31-K00269_0267_AHC722BBXY_ATGTCA_S15_L008_R1_001.unaln.bam 245912467 BAM S15_L008_R1 submitted_unaligned CPTAC3 b208fcf2-0c9d-4e9f-a140-c00c3b7d41f3 0ca1c6d89998bd4ae64b1bb8a6bc62f5 {"aliquot_tag": "ALQ_acc60f7", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.miRNA-Seq.S24_L005_R1.A C3L-05020 LSCC miRNA-Seq tissue_normal CPT0262510009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TTAGGC_S24_L005_R1_001.unaln.bam 244487184 BAM S24_L005_R1 submitted_unaligned CPTAC3 6879950b-772f-4394-a216-49c0882c8bdb a35f3040a0585c93ed7d6f70b9b8615a {"aliquot_tag": "ALQ_73b06f42", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.miRNA-Seq.T.hg38 C3L-05020 LSCC miRNA-Seq tumor CPT0262460009 a55ce9af-0f05-4d9e-b825-bf6e6168e05f_mirnaseq_gdc_realn.bam 268517353 BAM harmonized CPTAC3 3739804e-62af-4ba0-b474-d93def2206f9 17ee24d5e53a71544356021a664dad70 {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.RNA-Seq.chimeric.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.chimeric.gdc_realn.bam 25787460 BAM chimeric harmonized CPTAC3 b165aab7-2082-47b5-a751-532d5580293f 8d53f7f048a2136885cc3a35978b8aa6 {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.RNA-Seq.chimeric.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.chimeric.gdc_realn.bam 31046488 BAM chimeric harmonized CPTAC3 e60ea571-c05a-4f12-bee5-6dc3a339fd96 3be5013f05fd382619787d441596205e {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.RNA-Seq.genomic.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.genomic.gdc_realn.bam 6782961881 BAM genomic harmonized CPTAC3 3a6ec90f-6e44-43bf-bbb1-a6f2b0dadba0 bf15383ea9283d295ab724d7118d4e8b {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.RNA-Seq.genomic.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.genomic.gdc_realn.bam 6986430641 BAM genomic harmonized CPTAC3 857f53b8-1fd4-4350-8988-2c1eb792a1c0 ca9aa679a48522e11062359f96513ffb {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.RNA-Seq.S15_L004_R1.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R1_001.fastq.gz 3458601880 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 f56cde44-a302-4e05-af29-99b841a4c531 efe0682d3738cdf0e1d10dbff797f030 {"aliquot_tag": "ALQ_acc60f7", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.RNA-Seq.S15_L004_R2.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R2_001.fastq.gz 3703763631 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 b3c3cc55-f3ce-4488-9edd-0e3451544107 1ba52d5c26c42623e3e670b3e51de1d3 {"aliquot_tag": "ALQ_acc60f7", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.RNA-Seq.S3_L005_R1.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R1_001.fastq.gz 3405898536 FASTQ S3_L005_R1 submitted_unaligned CPTAC3 f5ab75f7-4feb-46d2-ac3e-52984334b00e 35f8b2d0af872f72a2c41c4c9686d309 {"aliquot_tag": "ALQ_73b06f42", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.RNA-Seq.S3_L005_R2.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R2_001.fastq.gz 3610606327 FASTQ S3_L005_R2 submitted_unaligned CPTAC3 9d873937-00f9-4770-8b8e-71354acc37bd b708013e51a9c2e907308ac88ab2d832 {"aliquot_tag": "ALQ_73b06f42", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.RNA-Seq.transcriptome.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.transcriptome.gdc_realn.bam 8492217139 BAM transcriptome harmonized CPTAC3 f96397e2-efd6-453a-a158-2372490c11bf 343217b673ad92a7a917f6c08dbb054f {"aliquot_tag": "ALQ_73b06f42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.RNA-Seq.transcriptome.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.transcriptome.gdc_realn.bam 9797103851 BAM transcriptome harmonized CPTAC3 b2a6f468-26c6-4eac-8a19-c3ba38086233 ceb639f7d7132f28d297f0590a3afcb9 {"aliquot_tag": "ALQ_acc60f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.WGS.N C3L-05020 LSCC WGS blood_normal CPT0263780002 CPT0263780002.WholeGenome.RP-2158.bam 26323199236 BAM submitted_aligned CPTAC3 664050ec-fee9-42dc-8903-5fe8c6b6a1d8 8dc7a90590477bfa4ff54f863074de96 {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05020.WGS.N.hg38 C3L-05020 LSCC WGS blood_normal CPT0263780002 9a5e7de2-a3e2-4837-b944-c4f71db5be2f_wgs_gdc_realn.bam 77638470623 BAM harmonized CPTAC3 82895603-0b17-4f96-b192-987c98e5be51 18656630f9f000e90070deb7a8472cb9 {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05020.WGS.T C3L-05020 LSCC WGS tumor CPT0262460006 CPT0262460006.WholeGenome.RP-2158.bam 25718538719 BAM submitted_aligned CPTAC3 048fff88-b8b1-43fd-9df5-0c9b13db65fe f470042fc7cd3ee5efcfe1c783b4d61c {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.WGS.T.hg38 C3L-05020 LSCC WGS tumor CPT0262460006 816c3a90-a426-4ad7-947b-b338d7b7d45d_wgs_gdc_realn.bam 76737362255 BAM harmonized CPTAC3 701a8e2f-d44a-4890-b736-125d2e8792ee 47b2da64d1a744189ddc88aa77dae8fd {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.WXS.A C3L-05020 LSCC WXS tissue_normal CPT0262510006 CPT0262510006.WholeExome.RP-1303.bam 20180583695 BAM submitted_aligned CPTAC3 bcde3d53-2c50-451d-ab72-0f4063c84a5f cdb2e9f074037af86363e6199ae4f233 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.WXS.A.hg38 C3L-05020 LSCC WXS tissue_normal CPT0262510006 b696be03-3e41-417a-8d7b-547e4742653a_wxs_gdc_realn.bam 27328228053 BAM harmonized CPTAC3 06b7290c-6beb-485f-884c-10dd6ffdffb8 52b9e56fd2586448a4bcba5868130156 {"aliquot_tag": "ALQ_e30f72d3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05020.WXS.N C3L-05020 LSCC WXS blood_normal CPT0263780002 CPT0263780002.WholeExome.RP-1303.bam 24858044942 BAM submitted_aligned CPTAC3 788eb82d-4e29-4c8b-9805-47a72af3ecfb a8f6e2c32edfa636b4ca6af014a063fd {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05020.WXS.N.hg38 C3L-05020 LSCC WXS blood_normal CPT0263780002 9a5e7de2-a3e2-4837-b944-c4f71db5be2f_wxs_gdc_realn.bam 33574755538 BAM harmonized CPTAC3 fb746083-979c-4c23-8273-892698ca18f6 5857c655d9702ddaad2dfa5c312175e3 {"aliquot_tag": "ALQ_2cd7e04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05020.WXS.T C3L-05020 LSCC WXS tumor CPT0262460006 CPT0262460006.WholeExome.RP-1303.bam 26091171819 BAM submitted_aligned CPTAC3 d664228c-afbf-40df-8a30-867a96666d25 ec9f77ced04ff4183529ce96703fd644 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05020.WXS.T.hg38 C3L-05020 LSCC WXS tumor CPT0262460006 816c3a90-a426-4ad7-947b-b338d7b7d45d_wxs_gdc_realn.bam 35868018839 BAM harmonized CPTAC3 0361b624-07a3-4fad-a4a8-616eb8d2651a 5d6f8a1809781d32fb1f33e5a761b411 {"aliquot_tag": "ALQ_9a737d66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.MethArray.Green.A C3L-05022 LSCC Methylation_Array tissue_normal CPT0275010006 204367400087_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1322308d-335a-4eed-888c-7b5350e975e6 0e9dfa584ea43fed53d451cc6b9ce146 {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.MethArray.Green.T C3L-05022 LSCC Methylation_Array tumor CPT0274960006 204372030090_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1e925439-9460-498c-953c-ffc5a33ab7a5 d7361a8dd3a714f7237f38c8bb60bad9 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.MethArray.Red.A C3L-05022 LSCC Methylation_Array tissue_normal CPT0275010006 204367400087_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 f6b47ea6-b89d-42ca-a046-d71489d4e555 38465b844862f201e632be53a9ff3c5b {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.MethArray.Red.T C3L-05022 LSCC Methylation_Array tumor CPT0274960006 204372030090_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 302db99f-5510-4de1-89cf-5e67dd32fe45 10909fe4748763ca7d8330d8ffc79ca1 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.miRNA-Seq.A.hg38 C3L-05022 LSCC miRNA-Seq tissue_normal CPT0275010009 c4de58a1-0e14-4ee8-9ba1-390f28b2d53a_mirnaseq_gdc_realn.bam 289901167 BAM harmonized CPTAC3 d97eacc0-62ac-476c-a434-c61eede0644f 5edaaf5c905770c443c30bbcf9d322cb {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.miRNA-Seq.S16_L008_R1.T C3L-05022 LSCC miRNA-Seq tumor CPT0274960009 200224_UNC31-K00269_0267_AHC722BBXY_CCGTCC_S16_L008_R1_001.unaln.bam 281311755 BAM S16_L008_R1 submitted_unaligned CPTAC3 f1127c44-595f-4e4a-afc6-428f024acca2 5fc790a1da3217e531014e8f4fc1e153 {"aliquot_tag": "ALQ_1928468d", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.miRNA-Seq.S23_L005_R1.A C3L-05022 LSCC miRNA-Seq tissue_normal CPT0275010009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TGACCA_S23_L005_R1_001.unaln.bam 260915964 BAM S23_L005_R1 submitted_unaligned CPTAC3 49d3ba55-2377-43ba-ab75-d97802cf4d0e fc577de26657bfb3a09f09baa615a4c9 {"aliquot_tag": "ALQ_2a70c0e1", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.miRNA-Seq.T.hg38 C3L-05022 LSCC miRNA-Seq tumor CPT0274960009 42811ed2-abb9-4d04-a0f4-cacb17339e59_mirnaseq_gdc_realn.bam 310163774 BAM harmonized CPTAC3 b2f46963-d645-458b-8d46-657b0a30a7a7 6c64e6cc608cb60dbf44e7888d6349aa {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.RNA-Seq.chimeric.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.chimeric.gdc_realn.bam 30850969 BAM chimeric harmonized CPTAC3 45408007-93bd-427e-9c1e-c6cb21037ea1 4b9264ed73821a3a5730b251ef39eb9d {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.RNA-Seq.chimeric.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.chimeric.gdc_realn.bam 43546465 BAM chimeric harmonized CPTAC3 34c761b5-63f9-438c-bbf9-987431d56928 4ee478107aa2020298476993710a20ea {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.RNA-Seq.genomic.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.genomic.gdc_realn.bam 7741440304 BAM genomic harmonized CPTAC3 c43d1b44-2e67-4dca-9502-e88b1fcd60de abc4b8ecfe4d5409664a53d3ebcd9a33 {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.RNA-Seq.genomic.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.genomic.gdc_realn.bam 9066957871 BAM genomic harmonized CPTAC3 c398c2c4-c563-4a5b-98e0-8278b3822428 a065b8fc7248ffb12d59131d17124315 {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.RNA-Seq.S16_L004_R1.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R1_001.fastq.gz 4451704090 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 fa0e4fbb-9a10-4dca-9e54-ae9915a506ca e14b17bb00f8114f809ee82570f9a47d {"aliquot_tag": "ALQ_1928468d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.RNA-Seq.S16_L004_R2.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R2_001.fastq.gz 4874032343 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 e3d4a9ce-c37c-4578-9eca-9d6719f10efa 862b2812a1ec86b1eb25073f32c14f17 {"aliquot_tag": "ALQ_1928468d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.RNA-Seq.S4_L005_R1.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R1_001.fastq.gz 3958739243 FASTQ S4_L005_R1 submitted_unaligned CPTAC3 bef01d6f-1e3d-4082-8717-e9efcf6430f7 c5c360a9adbd5202b6001eab443588d1 {"aliquot_tag": "ALQ_2a70c0e1", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.RNA-Seq.S4_L005_R2.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R2_001.fastq.gz 4207828548 FASTQ S4_L005_R2 submitted_unaligned CPTAC3 9a2e01f8-b26f-494f-b0bc-03d622bdf34e 160665a43a1b34320f3f02809ef4f62f {"aliquot_tag": "ALQ_2a70c0e1", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.RNA-Seq.transcriptome.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.transcriptome.gdc_realn.bam 10220446451 BAM transcriptome harmonized CPTAC3 38d177e8-b149-4936-b6e0-144bd1cba2e7 0cc336335ca4fcf39b27ed6c22789303 {"aliquot_tag": "ALQ_2a70c0e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.RNA-Seq.transcriptome.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.transcriptome.gdc_realn.bam 12018150526 BAM transcriptome harmonized CPTAC3 f8b25697-7416-4ece-ac7f-8bf1755df2fd 2d409bba5f8dd2ee6b1c422b30364941 {"aliquot_tag": "ALQ_1928468d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.WGS.N C3L-05022 LSCC WGS blood_normal CPT0273480002 CPT0273480002.WholeGenome.RP-2158.bam 24664061553 BAM submitted_aligned CPTAC3 c6195cca-32d9-4180-af27-6ed4deeb828d b105d1bd51dbfb280b3e28f318d943b9 {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05022.WGS.N.hg38 C3L-05022 LSCC WGS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wgs_gdc_realn.bam 73737561516 BAM harmonized CPTAC3 e06ef31f-a018-4db4-9f1b-b160bd3d0533 c4d45defcf1c2f292578dc7830484361 {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05022.WGS.T C3L-05022 LSCC WGS tumor CPT0274960006 CPT0274960006.WholeGenome.RP-2158.bam 30134145444 BAM submitted_aligned CPTAC3 d7dfe5fa-ec4f-4075-aaed-9e3a7d3d85e8 0c3688c2ed197eb04e4a4e2a32a40798 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.WGS.T C3L-05022 LSCC WGS tumor CPT0274960006 CPT0274960006.WholeGenome.RP-2158.bam 30181890872 BAM submitted_aligned CPTAC3 201af3c2-e107-4d5c-bcb2-a2ea3b202100 374f04ef59cab6c983b1cc844c1482be {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-05022.WGS.T.hg38 C3L-05022 LSCC WGS tumor CPT0274960006 b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wgs_gdc_realn.bam 89702754383 BAM harmonized CPTAC3 4e7a6847-796d-48c9-88e6-e620fe1a0ace fb61b78d5e351f903342e50545f90533 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.WXS.A C3L-05022 LSCC WXS tissue_normal CPT0275010006 CPT0275010006.WholeExome.RP-1303.bam 23075889681 BAM submitted_aligned CPTAC3 fdb6e82e-7991-470f-aa6b-ce8068a2939f 82bec9d2eec3c6b8f3353e5c2ba4d1ba {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.WXS.A.hg38 C3L-05022 LSCC WXS tissue_normal CPT0275010006 68686973-1dbf-4d47-a43e-69a3009fc8b3_wxs_gdc_realn.bam 32239008987 BAM harmonized CPTAC3 4466a26a-001c-476d-a592-db2ce4303c91 c89b6dc9a4dadbc1abbf50ab67800e19 {"aliquot_tag": "ALQ_bacfdd70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05022.WXS.N C3L-05022 LSCC WXS blood_normal CPT0273480002 CPT0273480002.WholeExome.RP-1303.bam 37845812059 BAM submitted_aligned CPTAC3 1b345167-b4b6-426a-b203-7f771130c218 df889fce7d02b14000cb612284c62432 {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05022.WXS.N.hg38 C3L-05022 LSCC WXS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wxs_gdc_realn.bam 51869172741 BAM harmonized CPTAC3 5375bbe6-ca93-44ce-b9b3-581538a8bdc8 e56a7826cf6322fe104670d3f0c115ef {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05022.WXS.T C3L-05022 LSCC WXS tumor CPT0274960006 CPT0274960006.WholeExome.RP-1303.bam 25934422470 BAM submitted_aligned CPTAC3 6317a479-727c-48bc-a913-dea3d6c7f2fe 5d180ff0ba35aa18e3b4279e8ca552bd {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05022.WXS.T.hg38 C3L-05022 LSCC WXS tumor CPT0274960006 b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wxs_gdc_realn.bam 35376808743 BAM harmonized CPTAC3 2e26f3ad-c58f-4fbd-a872-5310601a5703 9e1a7b7a7c2cb07f67213d8794c34f83 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05029.RNA-Seq.chimeric.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.chimeric.gdc_realn.bam 135221688 BAM chimeric harmonized CPTAC3 ea91672c-bfdb-4dcf-8745-cd28f0af0249 c99017f7a7f0c045855aed077fcf6c6d {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05029.RNA-Seq.genomic.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.genomic.gdc_realn.bam 8929917342 BAM genomic harmonized CPTAC3 26db7c05-6a10-4610-bd9c-68220ad6c86f 6ffbefd9c6b448c8cfffbc8ebbea085e {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05029.RNA-Seq.S69_R1.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R1_001.fastq.gz 4726914591 FASTQ S69_R1 submitted_unaligned CPTAC3 50652094-7875-4c68-bc43-be6814bee6a4 cb914cccb2d5ebaeb9609f22bacb9724 {"aliquot_tag": "ALQ_73748e25", "sample": "S69", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05029.RNA-Seq.S69_R2.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R2_001.fastq.gz 4865172580 FASTQ S69_R2 submitted_unaligned CPTAC3 109b67b9-d2c9-4e25-afa0-4f54afedeff4 1a1045471459cb779555b61173d1d2c0 {"aliquot_tag": "ALQ_73748e25", "sample": "S69", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05029.RNA-Seq.transcriptome.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.transcriptome.gdc_realn.bam 6458944877 BAM transcriptome harmonized CPTAC3 1f2cdeaa-053f-4b6f-b722-c51f870df7c8 128cacb12622193ca445f66daadfcd12 {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.MethArray.Green.A C3L-05145 LSCC Methylation_Array tissue_normal CPT0297120006 204372030014_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 7324aadf-49aa-4aa4-9151-81050d77d67f 7f8b65d702d1c7048f65c51462386718 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.MethArray.Green.T C3L-05145 LSCC Methylation_Array tumor CPT0296990006 204372030071_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 de2e299d-9bb3-4020-b878-b104e31cf28c e0afcb32be79e2e061df2f1293e27e7f {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.MethArray.Red.A C3L-05145 LSCC Methylation_Array tissue_normal CPT0297120006 204372030014_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 ea4dcb69-047c-4206-9f4b-32b4303cf94a cd08d7ee3ff4ad3889517f6f4e2fa578 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.MethArray.Red.T C3L-05145 LSCC Methylation_Array tumor CPT0296990006 204372030071_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 ef02b7eb-14f4-4dd9-a2a9-b07384212319 2664661857a03e42b38cd19f41828ceb {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.miRNA-Seq.A.hg38 C3L-05145 LSCC miRNA-Seq tissue_normal CPT0297120009 8da5d881-ab4a-4651-8d95-fe40477cba9c_mirnaseq_gdc_realn.bam 272620643 BAM harmonized CPTAC3 922b515e-4ed5-4e7d-b674-f181a0b295d4 a5438eeb30aa084883eb5860a77abf6a {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.miRNA-Seq.S19_L005_R1.A C3L-05145 LSCC miRNA-Seq tissue_normal CPT0297120009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGAAA_S19_L005_R1_001.unaln.bam 245362138 BAM S19_L005_R1 submitted_unaligned CPTAC3 3618840a-deb4-4e95-a67b-a8f829877638 b64021ab92279a45d590fac7797542d6 {"aliquot_tag": "ALQ_24996a8f", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.miRNA-Seq.S45_L007_R1.T C3L-05145 LSCC miRNA-Seq tumor CPT0296990009 200224_UNC31-K00269_0267_AHC722BBXY_TCATTC_S45_L007_R1_001.unaln.bam 181281986 BAM S45_L007_R1 submitted_unaligned CPTAC3 ea46e1dc-656e-49ac-b425-45cb9eb93bf8 395f06eeb0f28228a157455c4095394d {"aliquot_tag": "ALQ_196dd247", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.miRNA-Seq.T.hg38 C3L-05145 LSCC miRNA-Seq tumor CPT0296990009 906921c0-7be5-4643-80ea-064fa2eaae2f_mirnaseq_gdc_realn.bam 199968133 BAM harmonized CPTAC3 5071d4e0-4897-48eb-9f35-5e58c39f7f7b 326a44d726e5eae2e6aef7ad90b1ebd5 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.RNA-Seq.chimeric.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.chimeric.gdc_realn.bam 35267136 BAM chimeric harmonized CPTAC3 2652ba4a-f2ad-4a77-bad1-11b9ade9c8c6 eff8cd26ce15d58aa7b56ebf641e2cb5 {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.RNA-Seq.chimeric.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.chimeric.gdc_realn.bam 29043298 BAM chimeric harmonized CPTAC3 8fb4abe5-5889-41d2-8724-3925e2c6869f 3179c3a2a4eeb4c8bda2fe2f957de5d5 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.RNA-Seq.genomic.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.genomic.gdc_realn.bam 9074733377 BAM genomic harmonized CPTAC3 2f382a4d-2a6d-4dde-b354-efed8d7539c1 afebb12c02a4d00b03aa5af38a1d909d {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.RNA-Seq.genomic.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.genomic.gdc_realn.bam 7200929287 BAM genomic harmonized CPTAC3 bf813b3b-cf6d-4dfa-a856-01e84805e4a3 82e7d2f127a2974571d8cc13ffd766c0 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.RNA-Seq.S13_L004_R1.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R1_001.fastq.gz 3402545997 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 8cc89418-7fb5-4ced-8cb0-57380227d1da 7f47a1db480b85d0aff263bf68439eb8 {"aliquot_tag": "ALQ_196dd247", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.RNA-Seq.S13_L004_R2.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R2_001.fastq.gz 3646675574 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 5f94f5a5-fa3a-4976-972b-044ec97b853d d7329ff090c4eb86355c81e279184da1 {"aliquot_tag": "ALQ_196dd247", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.RNA-Seq.S1_L001_R1.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R1_001.fastq.gz 4135338522 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 8bb9aec1-8ad1-4c7a-bb5c-b06d1d2e7d60 9d46ffa784c8d576d275734148a5f79f {"aliquot_tag": "ALQ_24996a8f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.RNA-Seq.S1_L001_R2.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R2_001.fastq.gz 4993363659 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 5d6ef432-bab5-4b99-98e8-c0f2290f12f7 08741edc11e248901b16d7d844089831 {"aliquot_tag": "ALQ_24996a8f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.RNA-Seq.transcriptome.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.transcriptome.gdc_realn.bam 10329963587 BAM transcriptome harmonized CPTAC3 d9c8c5ed-4b02-4665-b2b2-ff47b01d21cb e79ddca0788793baf4421817837d3c5f {"aliquot_tag": "ALQ_24996a8f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.RNA-Seq.transcriptome.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.transcriptome.gdc_realn.bam 9158484272 BAM transcriptome harmonized CPTAC3 a15a3f78-3810-4f22-a7f6-e1041d688374 500ab131c282793a2558aea5dd04dcc0 {"aliquot_tag": "ALQ_196dd247", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.WGS.N C3L-05145 LSCC WGS blood_normal CPT0297190002 CPT0297190002.WholeGenome.RP-2158.bam 31177574695 BAM submitted_aligned CPTAC3 29a8d6c4-7bbd-4a4c-9cc9-5647c8d00a1d e4d12ae63dea50468bae7cffd5973723 {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05145.WGS.N.hg38 C3L-05145 LSCC WGS blood_normal CPT0297190002 876141d5-19d4-4daf-9415-07d0edb645da_wgs_gdc_realn.bam 94886173994 BAM harmonized CPTAC3 13daaafc-c444-40ce-b023-af39bd2306a2 a2f023098c723f7522243e9673407b0e {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05145.WGS.T C3L-05145 LSCC WGS tumor CPT0296990006 CPT0296990006.WholeGenome.RP-2158.bam 27984798543 BAM submitted_aligned CPTAC3 3490fa29-008f-44ff-b76b-fac182542f77 e63a3cf84a79dcceb0a7e817e81a1c74 {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.WGS.T.hg38 C3L-05145 LSCC WGS tumor CPT0296990006 01ccd04c-f42e-4b22-a3a3-c54dcbad40cc_wgs_gdc_realn.bam 84529226057 BAM harmonized CPTAC3 6eb74828-fb73-4de6-968c-833bc1f06b38 d5c5c498eab7b252b8e804b726f09228 {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.WXS.A C3L-05145 LSCC WXS tissue_normal CPT0297120006 CPT0297120006.WholeExome.RP-1303.bam 27669291063 BAM submitted_aligned CPTAC3 47360df6-1e53-4fc0-a7fc-73f0387f6bdb 300275af71ba45f73795b67d343cb1f9 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.WXS.A.hg38 C3L-05145 LSCC WXS tissue_normal CPT0297120006 97633450-1e60-4185-91aa-18a60c7ddb64_wxs_gdc_realn.bam 37461342490 BAM harmonized CPTAC3 60209f8a-278c-48ac-95f0-0adb8b854c00 a071794a7f164123f603eb23c1d25cb3 {"aliquot_tag": "ALQ_b426771e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05145.WXS.N C3L-05145 LSCC WXS blood_normal CPT0297190002 CPT0297190002.WholeExome.RP-1303.bam 25464554719 BAM submitted_aligned CPTAC3 52ad52f8-5848-427f-a7d8-ac908754266e da8e95c94102ea11a122b9cea6526dd6 {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05145.WXS.N.hg38 C3L-05145 LSCC WXS blood_normal CPT0297190002 876141d5-19d4-4daf-9415-07d0edb645da_wxs_gdc_realn.bam 34247849302 BAM harmonized CPTAC3 c10e82d4-555c-4c14-8b58-1b9110e155a6 263a33af0a58814e1f61fce7227721b2 {"aliquot_tag": "ALQ_c49b8216", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05145.WXS.T C3L-05145 LSCC WXS tumor CPT0296990006 CPT0296990006.WholeExome.RP-1303.bam 25498273813 BAM submitted_aligned CPTAC3 ce6fc164-8385-46cd-a759-febf945b50b6 f48bd8f1b324adc42b5044d0d6d8c85c {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05145.WXS.T.hg38 C3L-05145 LSCC WXS tumor CPT0296990006 01ccd04c-f42e-4b22-a3a3-c54dcbad40cc_wxs_gdc_realn.bam 35246497482 BAM harmonized CPTAC3 acf4f83b-2a1a-4eaf-8ae4-0425b6eab132 cac85bb398a1cf7146f740d335dccc23 {"aliquot_tag": "ALQ_89d2cfd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.MethArray.Green.A C3L-05148 LSCC Methylation_Array tissue_normal CPT0278920006 204372030022_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 948e6433-bd96-4216-9cb0-2a281e5c1075 b6f8b6c294bfefe21fc08f278dcf6683 {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.MethArray.Green.T C3L-05148 LSCC Methylation_Array tumor CPT0278900009 204372030076_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 562f6130-8884-454e-abcb-dc9263ce2f39 171c73919f8b9cd3d84063c64c615303 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.MethArray.Red.A C3L-05148 LSCC Methylation_Array tissue_normal CPT0278920006 204372030022_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 709076fa-8891-438d-909e-1074036bbc09 bf547af77fa414687bfd96a406a393ff {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.MethArray.Red.T C3L-05148 LSCC Methylation_Array tumor CPT0278900009 204372030076_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 441b6d64-c177-43bd-8b6a-80694fa1d42b 86a5c455290e097b6f32a00dc4f349d3 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.miRNA-Seq.A.hg38 C3L-05148 LSCC miRNA-Seq tissue_normal CPT0278920009 2c676eb7-4ae1-4a16-aab9-0e3387a6e0a6_mirnaseq_gdc_realn.bam 249871930 BAM harmonized CPTAC3 665403f3-3602-4a7b-8246-7364a4ef7f6f ffc25b62166929dabaea4b21a029df2d {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.miRNA-Seq.S4_L005_R1.A C3L-05148 LSCC miRNA-Seq tissue_normal CPT0278920009 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTTCC_S4_L005_R1_001.unaln.bam 222703925 BAM S4_L005_R1 submitted_unaligned CPTAC3 dddb86c8-2eb9-4517-9b75-b067e889c225 6d0bfedc29dbb8c90723bf14b75b96bc {"aliquot_tag": "ALQ_2b088a39", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.miRNA-Seq.S4_L006_R1.T C3L-05148 LSCC miRNA-Seq tumor CPT0278900006 200224_UNC31-K00269_0267_AHC722BBXY_TGACCA_S4_L006_R1_001.unaln.bam 248400241 BAM S4_L006_R1 submitted_unaligned CPTAC3 66b146b6-d8f9-4add-b0d3-361a820a18b9 89738cbaa26e83b71e986aa9d35eba8e {"aliquot_tag": "ALQ_c177c4c8", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.miRNA-Seq.T.hg38 C3L-05148 LSCC miRNA-Seq tumor CPT0278900006 3e8a0b36-3a6f-4441-9c15-8dfb0977a8f6_mirnaseq_gdc_realn.bam 271787631 BAM harmonized CPTAC3 33b06b47-aa51-4fad-af81-c00e7d9dd3c7 da649d712a7d065fb64639944526342e {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.RNA-Seq.chimeric.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.chimeric.gdc_realn.bam 34259978 BAM chimeric harmonized CPTAC3 63e6403a-5849-4329-b61e-8f1aff33b5df 06fc08b7991e78abeb2d98de89df71fb {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.RNA-Seq.chimeric.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.chimeric.gdc_realn.bam 59959525 BAM chimeric harmonized CPTAC3 cd80e021-0eeb-45fb-a664-477eb1112748 c29e77a9e451fe26567e058e88e0adae {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.RNA-Seq.genomic.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.genomic.gdc_realn.bam 8757153948 BAM genomic harmonized CPTAC3 b0348e7d-8595-4db8-aed6-2aa2b55e6fd7 f1d3700797633edff76fc1e600c54a2d {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.RNA-Seq.genomic.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.genomic.gdc_realn.bam 6362235313 BAM genomic harmonized CPTAC3 c58d6c8d-41e6-463e-bda3-5fa58727b0f8 2ca46730b16c641d8641bd7f15bb8816 {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.RNA-Seq.S14_L008_R1.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R1_001.fastq.gz 4305299688 FASTQ S14_L008_R1 submitted_unaligned CPTAC3 bb2fb91b-0a34-4ec2-ab6e-68a21aa1e3a6 036f2f2041f03d70b77e0f96de04ca72 {"aliquot_tag": "ALQ_2b088a39", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.RNA-Seq.S14_L008_R2.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R2_001.fastq.gz 4797159486 FASTQ S14_L008_R2 submitted_unaligned CPTAC3 53a00811-67fa-4991-9b18-fa784319d987 691a5bd1d8dee588d5f3b5f2b3ee7608 {"aliquot_tag": "ALQ_2b088a39", "sample": "S14", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.RNA-Seq.S20_L005_R1.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R1_001.fastq.gz 3041948461 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 af114fd2-b8b1-48fd-bbae-965cd6ecc918 9f3fc4bc8d7d998d729ffd64b1bcc99c {"aliquot_tag": "ALQ_c177c4c8", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.RNA-Seq.S20_L005_R2.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R2_001.fastq.gz 3201920741 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 c95f3058-14e1-4708-a812-b8114e516f1c 534e6d8becceee41a1beb97d3579d7a0 {"aliquot_tag": "ALQ_c177c4c8", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.RNA-Seq.transcriptome.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.transcriptome.gdc_realn.bam 10580180827 BAM transcriptome harmonized CPTAC3 9d58c51d-7ea0-4e93-8cd3-e26f3497be61 38061710882e84da3a851e74f59f8a32 {"aliquot_tag": "ALQ_2b088a39", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.RNA-Seq.transcriptome.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.transcriptome.gdc_realn.bam 7841896510 BAM transcriptome harmonized CPTAC3 de55e494-dd8c-4fb1-9bbb-8b618d7c30a4 2c2a9abe19fecd98b1a220f872d369f0 {"aliquot_tag": "ALQ_c177c4c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.WGS.N C3L-05148 LSCC WGS blood_normal CPT0278990002 CPT0278990002.WholeGenome.RP-2158.bam 29836582535 BAM submitted_aligned CPTAC3 e189b041-d5a6-4dd2-88c5-e6b4c22fc251 8f19565754ebc3a294551126f90c8a8c {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05148.WGS.N.hg38 C3L-05148 LSCC WGS blood_normal CPT0278990002 ab27f25f-6b76-4a14-be5a-4897d759a848_wgs_gdc_realn.bam 90006842825 BAM harmonized CPTAC3 99d55ea8-dde2-427d-9e42-1f122702d349 7758a2ce2fb6102798feaca5e613396b {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05148.WGS.T C3L-05148 LSCC WGS tumor CPT0278900009 CPT0278900009.WholeGenome.RP-2158.bam 23216766508 BAM submitted_aligned CPTAC3 41f7ee5c-da0b-4cae-a78e-c80e0a5255cb 98c2e3253f37ea32ec048db880eb01d3 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.WGS.T.hg38 C3L-05148 LSCC WGS tumor CPT0278900009 fd7fff26-2c02-43f1-b56f-81fccd132dbc_wgs_gdc_realn.bam 68509068022 BAM harmonized CPTAC3 8addce24-cadb-40bf-9a5a-7171feaf5dd3 dc5f07991a1043fafa3e92cede8f9df1 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.WXS.A C3L-05148 LSCC WXS tissue_normal CPT0278920006 CPT0278920006.WholeExome.RP-1303.bam 26528568031 BAM submitted_aligned CPTAC3 c70423f7-0300-49f1-aadd-89a917e6544c a6f6a1704eede37712ceac94af0e5bd1 {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.WXS.A.hg38 C3L-05148 LSCC WXS tissue_normal CPT0278920006 50a814ec-b172-4f55-a921-e4619b43b16e_wxs_gdc_realn.bam 36446700872 BAM harmonized CPTAC3 e5a190e6-38b4-477d-8560-e1b3d5d937ee 6abdfbde001697134734e215bd8fe79c {"aliquot_tag": "ALQ_bbb797a8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05148.WXS.N C3L-05148 LSCC WXS blood_normal CPT0278990002 CPT0278990002.WholeExome.RP-1303.bam 24646543150 BAM submitted_aligned CPTAC3 9cdf4723-b6c6-48b8-a822-c19ca833ba69 00fab83d5f0755b97c3bc9bc4d8b1136 {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05148.WXS.N.hg38 C3L-05148 LSCC WXS blood_normal CPT0278990002 ab27f25f-6b76-4a14-be5a-4897d759a848_wxs_gdc_realn.bam 33237508542 BAM harmonized CPTAC3 1706c8ca-2fe4-4c29-8999-05ba0e42f182 295c87e23484f368358c15aab1f9dea3 {"aliquot_tag": "ALQ_cb0a62a0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05148.WXS.T C3L-05148 LSCC WXS tumor CPT0278900009 CPT0278900009.WholeExome.RP-1303.bam 37401707555 BAM submitted_aligned CPTAC3 e3b2877d-f332-4128-bc11-8dc546f1bb9e bb161899b0fb2b129e92d4006cb5fbad {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05148.WXS.T.hg38 C3L-05148 LSCC WXS tumor CPT0278900009 fd7fff26-2c02-43f1-b56f-81fccd132dbc_wxs_gdc_realn.bam 51281421307 BAM harmonized CPTAC3 35de6836-16b2-41a9-aee8-02ff49da61b4 0e697753075e4c0b03ceb3d476351c62 {"aliquot_tag": "ALQ_51c8d959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.MethArray.Green.A C3L-05150 LSCC Methylation_Array tissue_normal CPT0277940006 204372030070_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b7e93fc2-a8c2-408b-8939-c80fc27b8bda 6139221ca91c9e5ade539bb3a251f2aa {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.MethArray.Green.T C3L-05150 LSCC Methylation_Array tumor CPT0277920009 204367400087_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e49ac7c9-576e-402f-8d22-a57d5b0474d9 e4aa0b4936a7cc7e1e82a73b3dfb1311 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.MethArray.Red.A C3L-05150 LSCC Methylation_Array tissue_normal CPT0277940006 204372030070_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 ee2ea3c2-7b09-402b-b9ec-e38dc7f05a22 0cbe9d0af4a9a2dbff0c6858e9103923 {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.MethArray.Red.T C3L-05150 LSCC Methylation_Array tumor CPT0277920009 204367400087_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 19169300-fb51-430e-89ea-c78ddc768240 8b7a5331cbed5e3dd6d205620625c731 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.miRNA-Seq.A.hg38 C3L-05150 LSCC miRNA-Seq tissue_normal CPT0277940009 8e930c81-fb0e-4c18-8a70-329884b362b4_mirnaseq_gdc_realn.bam 255902931 BAM harmonized CPTAC3 0c225fde-e318-4f9b-9e24-004a5f6cbe10 6fbee99c5aa0ac1fbca809cb92522711 {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.miRNA-Seq.S3_L005_R1.A C3L-05150 LSCC miRNA-Seq tissue_normal CPT0277940009 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTCAA_S3_L005_R1_001.unaln.bam 232618859 BAM S3_L005_R1 submitted_unaligned CPTAC3 8324c9d5-b03d-440c-9686-f54489ad24cb dababe677eafab1b3877a37d4d761199 {"aliquot_tag": "ALQ_52000f70", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.miRNA-Seq.S3_L006_R1.T C3L-05150 LSCC miRNA-Seq tumor CPT0277920006 200224_UNC31-K00269_0267_AHC722BBXY_TTAGGC_S3_L006_R1_001.unaln.bam 203756659 BAM S3_L006_R1 submitted_unaligned CPTAC3 896c25fc-775f-4a71-8aaf-7f43bde7d8c2 12d62086a1e43eeb1f7d598de89063bc {"aliquot_tag": "ALQ_4dffe741", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.miRNA-Seq.T.hg38 C3L-05150 LSCC miRNA-Seq tumor CPT0277920006 eb3ec794-3743-45fc-9767-9534255ce4b0_mirnaseq_gdc_realn.bam 223779809 BAM harmonized CPTAC3 b11d1962-fe69-4d80-bdff-62f4428944b5 cc0b35018d7d645e3a54ce86aaed08cf {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.RNA-Seq.chimeric.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.chimeric.gdc_realn.bam 31128161 BAM chimeric harmonized CPTAC3 b0d8a593-ff82-45fc-8c30-529876fda70f d284eb219616f4af514b7e8f57c295c5 {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.RNA-Seq.chimeric.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.chimeric.gdc_realn.bam 113789349 BAM chimeric harmonized CPTAC3 22148f60-02f5-4b8a-87e1-84939f862ebc 312f8df2a6f4cd0d007d5f823044e230 {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.RNA-Seq.genomic.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.genomic.gdc_realn.bam 8369842871 BAM genomic harmonized CPTAC3 00916619-d678-4776-a3ea-7699076ad762 dd30d03df49974335e2621da7635510a {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.RNA-Seq.genomic.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.genomic.gdc_realn.bam 8330445928 BAM genomic harmonized CPTAC3 b9c2e4b2-eed1-4ca0-94db-c9589949cbdb 3b6d5e54603d909a12762e4a2cad0fbb {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.RNA-Seq.S13_L008_R1.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R1_001.fastq.gz 4023851157 FASTQ S13_L008_R1 submitted_unaligned CPTAC3 af0a2ae8-1213-4f55-b0aa-3400671c912b 3b1264abb5e7fda32978349307ed0c50 {"aliquot_tag": "ALQ_52000f70", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.RNA-Seq.S13_L008_R2.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R2_001.fastq.gz 4510871326 FASTQ S13_L008_R2 submitted_unaligned CPTAC3 a45c7b13-759f-40cd-8f23-20187e682376 478f6ce516d0277437ec401d334c2615 {"aliquot_tag": "ALQ_52000f70", "sample": "S13", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.RNA-Seq.S19_L005_R1.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R1_001.fastq.gz 4037503113 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 8fcf53e9-43d9-43c0-8df2-9f87b28ada7e a0602f0e4f67335c01329131a8d62daa {"aliquot_tag": "ALQ_4dffe741", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.RNA-Seq.S19_L005_R2.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R2_001.fastq.gz 4226601737 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 1183ebe9-4e91-440d-8fad-fbe57a12f3fa fa9302b4989621fc341df49d928d5cfa {"aliquot_tag": "ALQ_4dffe741", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.RNA-Seq.transcriptome.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.transcriptome.gdc_realn.bam 9909747437 BAM transcriptome harmonized CPTAC3 6da77bc8-419a-4f5a-bc7d-4485d5cdbb42 6a367c27827dcd8590b93227c40e3ecc {"aliquot_tag": "ALQ_52000f70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.RNA-Seq.transcriptome.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.transcriptome.gdc_realn.bam 10002312903 BAM transcriptome harmonized CPTAC3 fc3de59a-532d-4ae3-af14-30dc1776d005 89e09fc952cd781d41d98cd080a41892 {"aliquot_tag": "ALQ_4dffe741", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.WGS.N C3L-05150 LSCC WGS blood_normal CPT0278010002 CPT0278010002.WholeGenome.RP-2158.bam 25019707852 BAM submitted_aligned CPTAC3 5b5988f0-d7b2-42db-9056-424626d5a763 01b3e2b6bd805492754b9ecf7bc7fcb9 {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05150.WGS.N.hg38 C3L-05150 LSCC WGS blood_normal CPT0278010002 70f3bcdb-e8fd-4054-b659-dfa5e4def710_wgs_gdc_realn.bam 73719380386 BAM harmonized CPTAC3 0cc84dab-4866-4121-aac6-08c250d8727a 6afa7bc5233c503b48d6ef07a2069d26 {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05150.WGS.T C3L-05150 LSCC WGS tumor CPT0277920009 CPT0277920009.WholeGenome.RP-2158.bam 30018505319 BAM submitted_aligned CPTAC3 aacd0bc4-b71d-41f0-b6de-d81ea37b1607 2189aa6682c9f31525f3469638ba02bf {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.WGS.T.hg38 C3L-05150 LSCC WGS tumor CPT0277920009 1645ce61-f1b1-4d70-b60f-ef20b644bf3e_wgs_gdc_realn.bam 90232145319 BAM harmonized CPTAC3 62869dd2-c112-46cb-9fea-79204061f30a 9ec800f9d57f3ba870a04fcb39ac5106 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.WXS.A C3L-05150 LSCC WXS tissue_normal CPT0277940006 CPT0277940006.WholeExome.RP-1303.bam 19323806295 BAM submitted_aligned CPTAC3 67523238-ffb3-40f7-8535-3e37aa2a6dbc 77a1a43e7fffb4117feba03786730586 {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.WXS.A.hg38 C3L-05150 LSCC WXS tissue_normal CPT0277940006 b9f48b85-1990-4e5d-b74b-f67b222ba8d7_wxs_gdc_realn.bam 27055430636 BAM harmonized CPTAC3 e34fcdc3-4c28-4cf5-8b87-e7ece2fdef53 fad271eccbc88e91b1c9c07a880824d3 {"aliquot_tag": "ALQ_c2bf12e1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05150.WXS.N C3L-05150 LSCC WXS blood_normal CPT0278010002 CPT0278010002.WholeExome.RP-1303.bam 28230546190 BAM submitted_aligned CPTAC3 651b29de-2ff3-4749-a5a6-7e01b95dfbd4 9224e86db6d62b05c9f7ea2bb7e9de01 {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05150.WXS.N.hg38 C3L-05150 LSCC WXS blood_normal CPT0278010002 70f3bcdb-e8fd-4054-b659-dfa5e4def710_wxs_gdc_realn.bam 38610432438 BAM harmonized CPTAC3 c0b1424d-4ff0-4e1e-bfcf-9f4f795c222c 3f797f31d014552c482999a9f17b480d {"aliquot_tag": "ALQ_dc7578a9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05150.WXS.T C3L-05150 LSCC WXS tumor CPT0277920009 CPT0277920009.WholeExome.RP-1303.bam 22431760642 BAM submitted_aligned CPTAC3 64fdf012-973d-45a2-8a96-08aa0c57506e adb790000ffa84ff426fbb017b9bb80d {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05150.WXS.T.hg38 C3L-05150 LSCC WXS tumor CPT0277920009 1645ce61-f1b1-4d70-b60f-ef20b644bf3e_wxs_gdc_realn.bam 30692653613 BAM harmonized CPTAC3 54834be3-ad5e-4d3e-b439-bdafdb5241d2 5b06235da1b2b83f8d0627e849cf4590 {"aliquot_tag": "ALQ_dd40fad0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.MethArray.Green.A C3L-05172 LSCC Methylation_Array tissue_normal CPT0297360006 204367400148_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8840c980-0d3f-467d-9ae4-fabbd4112f4f 94e4d7d1f950e068e66543851cd64b0c {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.MethArray.Green.T C3L-05172 LSCC Methylation_Array tumor CPT0297320006 204372030127_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 80a2d955-4365-4af8-9339-fd5428c7ee06 12b515da9c06d2d57ba93a2f4b6d3746 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.MethArray.Red.A C3L-05172 LSCC Methylation_Array tissue_normal CPT0297360006 204367400148_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 d8e8a044-c649-4701-87c4-d174821ed388 f2f9e39a2a220f2835de4f816c4a5992 {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.MethArray.Red.T C3L-05172 LSCC Methylation_Array tumor CPT0297320006 204372030127_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 266bfa37-0b8e-4ed5-bceb-49c359fbf521 90c0d05091c04fb7908bce0383740b3d {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.miRNA-Seq.A.hg38 C3L-05172 LSCC miRNA-Seq tissue_normal CPT0297360009 7bc4be93-4d22-4b64-92bd-8be3b5935b6f_mirnaseq_gdc_realn.bam 279423564 BAM harmonized CPTAC3 d7ed63d6-f26e-42f3-bffd-8b1f07568b04 8477df22bfb56376479303e3588d14b0 {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.miRNA-Seq.S20_L005_R1.A C3L-05172 LSCC miRNA-Seq tissue_normal CPT0297360009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGGCC_S20_L005_R1_001.unaln.bam 251785864 BAM S20_L005_R1 submitted_unaligned CPTAC3 74fdef89-0196-4630-8ad8-b4624297d6b3 dd80b9e747dedfda5cbfaf6cd55fb28a {"aliquot_tag": "ALQ_9cd16d44", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.miRNA-Seq.S46_L007_R1.T C3L-05172 LSCC miRNA-Seq tumor CPT0297320009 200224_UNC31-K00269_0267_AHC722BBXY_TCCCGA_S46_L007_R1_001.unaln.bam 197772926 BAM S46_L007_R1 submitted_unaligned CPTAC3 13452f59-74ee-4b97-b355-c105758e6097 ed12a4ecb383745eb3c74d07c9743aeb {"aliquot_tag": "ALQ_6951cb84", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.miRNA-Seq.T.hg38 C3L-05172 LSCC miRNA-Seq tumor CPT0297320009 f3222863-0f84-4926-8dfd-6233c0ba92ae_mirnaseq_gdc_realn.bam 224629784 BAM harmonized CPTAC3 ae429d8c-9bcf-46f1-91e2-e358d80aa09d 26aac9bf5bc220c151173f4a70f57469 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.RNA-Seq.chimeric.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.chimeric.gdc_realn.bam 29938292 BAM chimeric harmonized CPTAC3 89e35627-0752-4074-b859-fdc754844467 46c42a0235d1ad8d1b0314dc198066a4 {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.RNA-Seq.chimeric.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.chimeric.gdc_realn.bam 20693545 BAM chimeric harmonized CPTAC3 77e75272-94f1-4c57-bee1-41bcda432e88 c68ef568524fccb761be5488ca04c9b9 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.RNA-Seq.genomic.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.genomic.gdc_realn.bam 8417953039 BAM genomic harmonized CPTAC3 a02cfa93-7bec-4f6f-90bd-4efea0036459 fe4c39da7ddbd25ae51bf527ba44a20b {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.RNA-Seq.genomic.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.genomic.gdc_realn.bam 5433973922 BAM genomic harmonized CPTAC3 420366ca-eb58-4ff6-b45c-e5456fcf2cf9 b30b202088b90826ac8a3265333e5108 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.RNA-Seq.S14_L004_R1.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R1_001.fastq.gz 2621957559 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 f31993fe-df52-42b8-9be6-ce9297eb6d51 2f12d44b289d4fd5d57c9a0f3580074a {"aliquot_tag": "ALQ_6951cb84", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.RNA-Seq.S14_L004_R2.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R2_001.fastq.gz 2760954111 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 bcc70605-36f2-47a9-8f4e-c6a2c97f62ce 85c577006ca647d7486975fa9cc42515 {"aliquot_tag": "ALQ_6951cb84", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.RNA-Seq.S3_L001_R1.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3707732955 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 819fbd4a-e5f1-4d53-bbf7-8b9d3cb9565d b96dfbe5d1e90628072d6ed11df3ee6f {"aliquot_tag": "ALQ_9cd16d44", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.RNA-Seq.S3_L001_R2.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 4578052186 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 209a6677-1a54-45fd-8105-9533e9e36511 07075722d1aa7b0eaa22269d645150d1 {"aliquot_tag": "ALQ_9cd16d44", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.RNA-Seq.transcriptome.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.transcriptome.gdc_realn.bam 9880563058 BAM transcriptome harmonized CPTAC3 807fce24-5a0c-4ecd-840c-4e76c846f9da b991838dbbb56f4fa441b0af5f94a491 {"aliquot_tag": "ALQ_9cd16d44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.RNA-Seq.transcriptome.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.transcriptome.gdc_realn.bam 8130003921 BAM transcriptome harmonized CPTAC3 e0d3fd8f-5506-43bf-99ca-9fcee062038e 65338345048e688079a1be425cae4693 {"aliquot_tag": "ALQ_6951cb84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.WGS.N C3L-05172 LSCC WGS blood_normal CPT0297430002 CPT0297430002.WholeGenome.RP-2158.bam 23178518008 BAM submitted_aligned CPTAC3 dc99c33b-4166-4ffd-b1b1-6a3b8163483f 64c8e01c251833dc68f6e1a3469d932b {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05172.WGS.N.hg38 C3L-05172 LSCC WGS blood_normal CPT0297430002 b9fc8052-a489-40d8-a755-bfb51c9fb52e_wgs_gdc_realn.bam 68180485289 BAM harmonized CPTAC3 68752f3f-4795-4299-ab31-8ad5af5ae616 985efc0822537676d4e1ceefef569f0d {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05172.WGS.T C3L-05172 LSCC WGS tumor CPT0297320006 CPT0297320006.WholeGenome.RP-2158.bam 29724775421 BAM submitted_aligned CPTAC3 b6cf2f2c-1fd1-4b12-a3b3-7c4914af63af 98dd7af734347d0f5d4b4631271ad048 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.WGS.T.hg38 C3L-05172 LSCC WGS tumor CPT0297320006 0a416131-f6b7-460a-9591-ef8ffe154266_wgs_gdc_realn.bam 86958238016 BAM harmonized CPTAC3 c15bd281-e096-402a-9482-44882e3eef7f 6e32113973ab1de5a74368371d55ba18 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.WXS.A C3L-05172 LSCC WXS tissue_normal CPT0297360006 CPT0297360006.WholeExome.RP-1303.bam 19195981861 BAM submitted_aligned CPTAC3 34cce4cc-ef1d-4b89-83d8-880bb93f03a4 beb8877c4f38b0dcfd3a60f8aae7b9fb {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.WXS.A.hg38 C3L-05172 LSCC WXS tissue_normal CPT0297360006 243acbe5-e915-48b0-9a17-f487b1e41dc8_wxs_gdc_realn.bam 25342397811 BAM harmonized CPTAC3 8b84f205-e154-4165-abb1-703bb4ab229b 833bdbe783fb9cc1c98abda19ddfcd66 {"aliquot_tag": "ALQ_c6e70d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05172.WXS.N C3L-05172 LSCC WXS blood_normal CPT0297430002 CPT0297430002.WholeExome.RP-1303.bam 31473073088 BAM submitted_aligned CPTAC3 5f9e1ac9-1089-43db-9f85-e2518f4498b3 846b3f77d20be84aee699fab64d1a826 {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05172.WXS.N.hg38 C3L-05172 LSCC WXS blood_normal CPT0297430002 b9fc8052-a489-40d8-a755-bfb51c9fb52e_wxs_gdc_realn.bam 43250332219 BAM harmonized CPTAC3 e6f80465-0ab7-4f1c-98dc-0d8b877fb33e eed869eb256ab36f64518c23465eb243 {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05172.WXS.T C3L-05172 LSCC WXS tumor CPT0297320006 CPT0297320006.WholeExome.RP-1303.bam 49995416534 BAM submitted_aligned CPTAC3 6a696c6b-46a8-4a0c-a201-c7241e60b918 fdee3c7e879c53cd3d2cd4af927cfff3 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05172.WXS.T.hg38 C3L-05172 LSCC WXS tumor CPT0297320006 0a416131-f6b7-460a-9591-ef8ffe154266_wxs_gdc_realn.bam 67899837993 BAM harmonized CPTAC3 30669ecb-79ab-4a97-b3d4-ef898f0a5757 af83ce125b7764a791bbc00a3dcf3d77 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.MethArray.Green.A C3L-05176 LSCC Methylation_Array tissue_normal CPT0297850006 204367400148_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e2abc6d1-7ba9-4657-9504-8f30362a9047 c5b88ee972bb4ed8ba6a2eb2cf5c2106 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.MethArray.Green.T C3L-05176 LSCC Methylation_Array tumor CPT0297810006 204372030127_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ee3fdee9-200d-4b02-ab3d-85cffedd6050 08268624565fb1ef14a19066e8fecbcb {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.MethArray.Red.A C3L-05176 LSCC Methylation_Array tissue_normal CPT0297850006 204367400148_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 8fc6a5e3-56fb-496a-9fc0-95ea59747a10 eeb963c24e00461e430c30bcad0ef7d0 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.MethArray.Red.T C3L-05176 LSCC Methylation_Array tumor CPT0297810006 204372030127_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 ae1fcac6-81f4-4ab9-90d7-f94086117301 d9cf6ae9645e55cbf67f0cc604dc1fa0 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.miRNA-Seq.A.hg38 C3L-05176 LSCC miRNA-Seq tissue_normal CPT0297850009 b4df2c81-2d78-49fa-a0b9-f1cff2d099bf_mirnaseq_gdc_realn.bam 212830645 BAM harmonized CPTAC3 2b972157-0a16-426b-bcc6-893817fa19aa ceeee5910fa99b3798b8d92e1b7037d5 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.miRNA-Seq.S10_L005_R1.A C3L-05176 LSCC miRNA-Seq tissue_normal CPT0297850009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGTACG_S10_L005_R1_001.unaln.bam 191035152 BAM S10_L005_R1 submitted_unaligned CPTAC3 06731481-e6ab-4f02-8ee6-0c747c496b85 d434f8d53ce6834a0201a1952d6d5622 {"aliquot_tag": "ALQ_b1b6e757", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.miRNA-Seq.S48_L007_R1.T C3L-05176 LSCC miRNA-Seq tumor CPT0297810009 200224_UNC31-K00269_0267_AHC722BBXY_TCGGCA_S48_L007_R1_001.unaln.bam 228755461 BAM S48_L007_R1 submitted_unaligned CPTAC3 f8fc81c6-ab12-44b2-a832-4b676f24ea5f d2db65bd5cb0855bfdce17d008c0a330 {"aliquot_tag": "ALQ_44364197", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.miRNA-Seq.T.hg38 C3L-05176 LSCC miRNA-Seq tumor CPT0297810009 0823bfb1-ba0f-4e59-a49c-ee19dadb5bcd_mirnaseq_gdc_realn.bam 257510902 BAM harmonized CPTAC3 24027047-7354-4190-b35b-336d4012dfdc 3019e74c7d4ec4465fce1c1492eabdc2 {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.RNA-Seq.chimeric.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.chimeric.gdc_realn.bam 28771931 BAM chimeric harmonized CPTAC3 9aefe99b-8b42-4639-adcc-5ef7e36a4996 269fbfda07968fefec6b2f5079431532 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.RNA-Seq.chimeric.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.chimeric.gdc_realn.bam 42811558 BAM chimeric harmonized CPTAC3 1e7a95ac-e704-4045-8d18-0f287d7ec099 f90a103132db05adb741333341cc53fe {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.RNA-Seq.genomic.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.genomic.gdc_realn.bam 7945946869 BAM genomic harmonized CPTAC3 1786f977-de2b-488d-ac3c-2c956fcb36ac 52aa5fc4763c8cccb3bc5d0f642627e2 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.RNA-Seq.genomic.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.genomic.gdc_realn.bam 10206211884 BAM genomic harmonized CPTAC3 b1d1c691-be66-4d77-941a-ad7e3d8d4a21 a54507d44d66340172378dfd12444193 {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.RNA-Seq.S16_L004_R1.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R1_001.fastq.gz 5137036658 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 9a0bd005-e1bb-48d1-a21c-f820577a17c0 2dcf2740cabf3b98e935b8b119f2c934 {"aliquot_tag": "ALQ_44364197", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.RNA-Seq.S16_L004_R2.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R2_001.fastq.gz 5487723603 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 a70c8433-2b36-4fd2-980d-aa7a48aeb584 7322a23e8c8ffa09af3c2f4c62c9cbcc {"aliquot_tag": "ALQ_44364197", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.RNA-Seq.S5_L002_R1.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R1_001.fastq.gz 3558919849 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 6514b654-ce55-43d0-aef0-a041ee796908 1946ecdc176c0a7306f5bfdf9f6db864 {"aliquot_tag": "ALQ_b1b6e757", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.RNA-Seq.S5_L002_R2.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R2_001.fastq.gz 4310578591 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 ab6848cd-7f4a-4034-8aae-1a79e80cc707 ed930ae0f8c374084213dae2ae754e50 {"aliquot_tag": "ALQ_b1b6e757", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.RNA-Seq.transcriptome.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.transcriptome.gdc_realn.bam 9430742472 BAM transcriptome harmonized CPTAC3 65a01918-f54d-497e-b7af-ed56d8074f2e a84e0defb5124a46991dc24ed0fbfe34 {"aliquot_tag": "ALQ_b1b6e757", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.RNA-Seq.transcriptome.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.transcriptome.gdc_realn.bam 14166215101 BAM transcriptome harmonized CPTAC3 a3e497c8-fd40-4041-a45b-3c4d47bb7f04 83d763d36f07eaa20c18446a158310fc {"aliquot_tag": "ALQ_44364197", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.WGS.N C3L-05176 LSCC WGS blood_normal CPT0297920002 CPT0297920002.WholeGenome.RP-2158.bam 29225582987 BAM submitted_aligned CPTAC3 156826c1-8077-43a5-a20f-d922277786cc 633ebc16cc7d7e68a7672ca996926c06 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05176.WGS.N C3L-05176 LSCC WGS blood_normal CPT0297920002 CPT0297920002.WholeGenome.RP-2158.bam 29269475686 BAM submitted_aligned CPTAC3 9537f307-3a43-4e73-b368-57469bba720d a2178da93f50120aedb702373cd10df8 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-05176.WGS.N.hg38 C3L-05176 LSCC WGS blood_normal CPT0297920002 264ca255-c027-4787-a706-2a38e4fe0aac_wgs_gdc_realn.bam 87749442541 BAM harmonized CPTAC3 0b6ccfaf-52b0-4cf5-a8ce-3511b17f0065 d034a3a6f1a717b27cca5a332d731630 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05176.WGS.T C3L-05176 LSCC WGS tumor CPT0297810006 CPT0297810006.WholeGenome.RP-2158.bam 25526132758 BAM submitted_aligned CPTAC3 e7142303-d0a3-4928-a756-ab00e9bd88b8 e9fab4a4f9dc7beff441e96717efe82d {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.WGS.T.hg38 C3L-05176 LSCC WGS tumor CPT0297810006 7132ca08-c95c-4cd9-83b7-3cf6bfbfa2cf_wgs_gdc_realn.bam 74038074122 BAM harmonized CPTAC3 c0c48786-513b-4ad2-838d-21269fa48404 9fee5ed6fc29eceb3a2c92cf9a8e41c6 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.WXS.A C3L-05176 LSCC WXS tissue_normal CPT0297850006 CPT0297850006.WholeExome.RP-1303.bam 20000359769 BAM submitted_aligned CPTAC3 537135fc-bb55-42ac-afb7-fead2451ac75 11f96929fd02051a3abfd1dc93c513c5 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.WXS.A.hg38 C3L-05176 LSCC WXS tissue_normal CPT0297850006 f4ea0e7f-795c-48d6-adcb-77e0a31ecc07_wxs_gdc_realn.bam 26725401058 BAM harmonized CPTAC3 ed1aacd8-9ea8-4b45-a46a-35ee3c78956e db6e6519a805de5d2f418d3231998a29 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05176.WXS.N C3L-05176 LSCC WXS blood_normal CPT0297920002 CPT0297920002.WholeExome.RP-1303.bam 29055113175 BAM submitted_aligned CPTAC3 a868fc10-fef3-4508-9467-5095fcd12c17 34d77950d79b788b421de08b87044c0a {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05176.WXS.N.hg38 C3L-05176 LSCC WXS blood_normal CPT0297920002 264ca255-c027-4787-a706-2a38e4fe0aac_wxs_gdc_realn.bam 39721052579 BAM harmonized CPTAC3 588f5cbd-4d7b-41b8-bd6a-7cbd3f4177d9 5f589dc09b4ea2807285ee909d4fada0 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05176.WXS.T C3L-05176 LSCC WXS tumor CPT0297810006 CPT0297810006.WholeExome.RP-1303.bam 34419652620 BAM submitted_aligned CPTAC3 20c2298a-f94b-4327-9976-4a391e0f87e2 40963ea8b4ae3631e75fb914e8d23955 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05176.WXS.T.hg38 C3L-05176 LSCC WXS tumor CPT0297810006 7132ca08-c95c-4cd9-83b7-3cf6bfbfa2cf_wxs_gdc_realn.bam 48289991580 BAM harmonized CPTAC3 16cd5c8a-bb98-466a-acc8-c3fdc69677ba 998c80614f7ca93786ae0bffa73bf7c5 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.MethArray.Green.A C3L-05212 LSCC Methylation_Array tissue_normal CPT0296760006 204367490048_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 18c87ff3-9152-4260-97ba-7245a1f45593 fbcd6e4f54d887a14627effd61e19414 {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.MethArray.Green.T C3L-05212 LSCC Methylation_Array tumor CPT0296710006 204367400148_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 9bba17cc-0dce-4e18-a35a-68972aa975f6 69b7812f5f1cb742ea465116c5ffe250 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.MethArray.Red.A C3L-05212 LSCC Methylation_Array tissue_normal CPT0296760006 204367490048_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 ae7edef1-c1d7-4032-bb46-6c2f9b9a46d5 8cf1c6d0f48b7850b8a6f2b1f47e93ad {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.MethArray.Red.T C3L-05212 LSCC Methylation_Array tumor CPT0296710006 204367400148_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 b2d373c6-96cd-421e-b4c5-c65779ce9af7 18ee75a7fd0ab053cc2c21902208f601 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.miRNA-Seq.A.hg38 C3L-05212 LSCC miRNA-Seq tissue_normal CPT0296760009 dde2fde7-62b3-4480-a126-04b9f20b4462_mirnaseq_gdc_realn.bam 263072653 BAM harmonized CPTAC3 5df75c12-420b-4cd5-9428-ea3e98c7c552 1696d895b628ced73cd8195146892ddb {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.miRNA-Seq.S18_L005_R1.A C3L-05212 LSCC miRNA-Seq tissue_normal CPT0296760009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTCCGC_S18_L005_R1_001.unaln.bam 235665526 BAM S18_L005_R1 submitted_unaligned CPTAC3 f0c1c5fb-b8a4-4238-8621-dddb8697160f 8de8de1d9b28962b6725fcfdb0181848 {"aliquot_tag": "ALQ_a13724e6", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.miRNA-Seq.S44_L007_R1.T C3L-05212 LSCC miRNA-Seq tumor CPT0296710009 200224_UNC31-K00269_0267_AHC722BBXY_TATAAT_S44_L007_R1_001.unaln.bam 291326509 BAM S44_L007_R1 submitted_unaligned CPTAC3 c31a76c1-3ed6-4572-93c9-a0a987c03424 5b560e3ae988847626bdeda6ec194c7d {"aliquot_tag": "ALQ_1317f8f6", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.miRNA-Seq.T.hg38 C3L-05212 LSCC miRNA-Seq tumor CPT0296710009 6b4d3edf-2a93-4970-a3de-f80cad4feb82_mirnaseq_gdc_realn.bam 317091984 BAM harmonized CPTAC3 00ffb5ed-4fba-4d1b-bca4-f802eec34c29 5d4fe1574a0389ab85e481a02b41a0f0 {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.RNA-Seq.chimeric.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.chimeric.gdc_realn.bam 36577303 BAM chimeric harmonized CPTAC3 bfe63e7c-4363-4d52-95d9-2c3b46291e93 a1f670386b65eb6b78f2db0018e59916 {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.RNA-Seq.chimeric.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.chimeric.gdc_realn.bam 45814527 BAM chimeric harmonized CPTAC3 202c3753-b57c-47e0-b39a-13f997ecd26f b2f7477cc4b67242a437544fa98b40ea {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.RNA-Seq.genomic.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.genomic.gdc_realn.bam 9311061790 BAM genomic harmonized CPTAC3 bd4f8ef1-bce2-4772-8438-a8dc047aa56b 55ba70765fe66e2f0678362b6668bd3f {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.RNA-Seq.genomic.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.genomic.gdc_realn.bam 11337502388 BAM genomic harmonized CPTAC3 88d9fbc2-9b74-480c-8109-d0d72292a490 1b110f3c009b57a0f0ccb855a82bc5be {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.RNA-Seq.S27_L003_R1.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R1_001.fastq.gz 5371243966 FASTQ S27_L003_R1 submitted_unaligned CPTAC3 749d881c-92f4-4ba1-8a5d-3b95fa4a5938 6dff6b2c18ff8a15bd5339ca3054d1da {"aliquot_tag": "ALQ_1317f8f6", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.RNA-Seq.S27_L003_R2.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R2_001.fastq.gz 6365162923 FASTQ S27_L003_R2 submitted_unaligned CPTAC3 65ebc622-bb9d-4a16-a8e3-4bc1ddbfde3d fc0014ce369cfacd334c6ad4659877ab {"aliquot_tag": "ALQ_1317f8f6", "sample": "S27", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.RNA-Seq.S2_L001_R1.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 4085267116 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 e649107d-a626-49b3-94b4-c455ab9f0139 6f34d7023b44e1cc75b2b5a1f9de5329 {"aliquot_tag": "ALQ_a13724e6", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.RNA-Seq.S2_L001_R2.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 5169036395 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 fa735290-d0e0-456f-b2aa-e48b0b39a19d 51974718c1b14b499d8c774a84c066f6 {"aliquot_tag": "ALQ_a13724e6", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.RNA-Seq.transcriptome.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.transcriptome.gdc_realn.bam 11226861746 BAM transcriptome harmonized CPTAC3 6a7c434e-f270-4c31-9a34-ebb905e00e07 490fec8f52d1bc5d0ed89eb55112ff24 {"aliquot_tag": "ALQ_a13724e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.RNA-Seq.transcriptome.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.transcriptome.gdc_realn.bam 15275340000 BAM transcriptome harmonized CPTAC3 109fe0c1-f35e-4bd1-998f-545108af5a80 54d3af2e3a94854ce5d0a62f5cf2debe {"aliquot_tag": "ALQ_1317f8f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.WGS.N C3L-05212 LSCC WGS blood_normal CPT0296830002 CPT0296830002.WholeGenome.RP-2158.bam 22568046114 BAM submitted_aligned CPTAC3 bd31848e-ef07-4d14-a60b-b63e4039e1bc 2ad9c885dfaff36bdbe6b524eca7e275 {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05212.WGS.N.hg38 C3L-05212 LSCC WGS blood_normal CPT0296830002 bf747777-536e-4fc9-bac9-e55b29857ab1_wgs_gdc_realn.bam 67352781148 BAM harmonized CPTAC3 730b7bba-f95b-41c5-9280-824de58d9c4d 981939eb35815e60c0a87f06e4eeb65f {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05212.WGS.T C3L-05212 LSCC WGS tumor CPT0296710006 CPT0296710006.WholeGenome.RP-2158.bam 20184063318 BAM submitted_aligned CPTAC3 40904e59-e895-41d1-9207-4374cb0b9c3d ba5a5a2b4b2992aabd62123cdb1fe9c1 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.WGS.T.hg38 C3L-05212 LSCC WGS tumor CPT0296710006 437c43df-b54f-4e38-adbb-0d6f941261a0_wgs_gdc_realn.bam 59590387959 BAM harmonized CPTAC3 cab17baa-cddb-4a5b-8112-f12d52e71b88 36bff901b5872030f76a4183792ace1d {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.WXS.A C3L-05212 LSCC WXS tissue_normal CPT0296760006 CPT0296760006.WholeExome.RP-1303.bam 24078532732 BAM submitted_aligned CPTAC3 ccca121a-8694-4234-86d9-93a718bb17f1 fc07109987d2868aa848bb4ce565510e {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.WXS.A.hg38 C3L-05212 LSCC WXS tissue_normal CPT0296760006 446eb78c-af82-4b69-b446-fb5b53c07017_wxs_gdc_realn.bam 32591641037 BAM harmonized CPTAC3 7038eadd-81fc-4bd7-ada7-dd21aead704b 642c38748069d7af35bf519d6cb41d10 {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05212.WXS.N C3L-05212 LSCC WXS blood_normal CPT0296830002 CPT0296830002.WholeExome.RP-1303.bam 22491075979 BAM submitted_aligned CPTAC3 7a1e8cec-2e2e-4e67-97d6-0556ba0f1df2 449d059123b48f21c3abde3eb1a31822 {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05212.WXS.N.hg38 C3L-05212 LSCC WXS blood_normal CPT0296830002 bf747777-536e-4fc9-bac9-e55b29857ab1_wxs_gdc_realn.bam 30197138849 BAM harmonized CPTAC3 81d5790d-37b9-4ff7-9cfc-dcb12d4907b9 3dc081014e72889a1ecd910b7a95ac8c {"aliquot_tag": "ALQ_f53c0cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05212.WXS.T C3L-05212 LSCC WXS tumor CPT0296710006 CPT0296710006.WholeExome.RP-1303.bam 23604910148 BAM submitted_aligned CPTAC3 e0a57216-ddf9-4370-9278-5f5d920a2b5a 81cf3653ea0a35ec23dd5cfcfb5c5407 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05212.WXS.T.hg38 C3L-05212 LSCC WXS tumor CPT0296710006 437c43df-b54f-4e38-adbb-0d6f941261a0_wxs_gdc_realn.bam 32311960857 BAM harmonized CPTAC3 28dd0d6c-7fae-42dc-9930-5bdbdacf8338 1cd9484fc9844e051de161ef7fe5c5ac {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.MethArray.Green.A C3L-05221 LSCC Methylation_Array tissue_normal CPT0298170006 204367490030_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0abec1b5-28e1-4115-90cf-20ea49d8b65f 799f34c9f0fdb511dce7191647e418d3 {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.MethArray.Green.T C3L-05221 LSCC Methylation_Array tumor CPT0298140006 204372030070_R06C01_Grn.idat 13677904 IDAT Green NA CPTAC3 e38b5e06-de36-44aa-9d90-913381be4475 205fb830ed2530ae9ef2e685ee292a7f {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.MethArray.Red.A C3L-05221 LSCC Methylation_Array tissue_normal CPT0298170006 204367490030_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 b0f07918-48eb-47e2-bb24-5e5bd1f0c1c0 3686679ca095ed533597fbd1d4cc1e1c {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.MethArray.Red.T C3L-05221 LSCC Methylation_Array tumor CPT0298140006 204372030070_R06C01_Red.idat 13677904 IDAT Red NA CPTAC3 19739f8c-2983-4b17-9171-1e42e4df67a4 c5f3c9911bb9a7aaff13402b293ad87f {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.miRNA-Seq.A.hg38 C3L-05221 LSCC miRNA-Seq tissue_normal CPT0298170009 c196831a-1a99-4dc9-b365-e29021961b62_mirnaseq_gdc_realn.bam 294895764 BAM harmonized CPTAC3 c3049936-7ad8-4a12-befc-c607e0985cff ebbab817fcb96fd190bd77672210710e {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.miRNA-Seq.S12_L005_R1.A C3L-05221 LSCC miRNA-Seq tissue_normal CPT0298170009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GAGTGG_S12_L005_R1_001.unaln.bam 257197536 BAM S12_L005_R1 submitted_unaligned CPTAC3 ec5d15d5-a3f0-43c7-932c-9d95e92eb471 291f38405f8c505aeaa4ac68e50e1482 {"aliquot_tag": "ALQ_1a319516", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.miRNA-Seq.S1_L006_R1.T C3L-05221 LSCC miRNA-Seq tumor CPT0298140009 200224_UNC31-K00269_0267_AHC722BBXY_ATCACG_S1_L006_R1_001.unaln.bam 206646803 BAM S1_L006_R1 submitted_unaligned CPTAC3 dff2e1d3-37c3-4658-8796-3b68c6595d2f 926225a8c8d8d1e34783447b7b67db02 {"aliquot_tag": "ALQ_5d91efc6", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.miRNA-Seq.T.hg38 C3L-05221 LSCC miRNA-Seq tumor CPT0298140009 c37de72e-2f9b-4fed-8fac-218feffcfb2d_mirnaseq_gdc_realn.bam 224476452 BAM harmonized CPTAC3 07ee17cb-e3aa-41c1-842a-0c710374c2cd 323b1dea1450eb0b58bdf1d79a3b2309 {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.RNA-Seq.chimeric.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.chimeric.gdc_realn.bam 29441197 BAM chimeric harmonized CPTAC3 c77def87-f7ba-4186-a66f-9c0282b0affb d15c0c56471f9ac58163c07ac1dbed3e {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.RNA-Seq.chimeric.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.chimeric.gdc_realn.bam 61650923 BAM chimeric harmonized CPTAC3 32ef953d-577e-4836-bf5e-de96cf8a9171 83c8675bd26af4b61df5d06ed87f8341 {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.RNA-Seq.genomic.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.genomic.gdc_realn.bam 8212186078 BAM genomic harmonized CPTAC3 d0cd19d6-4dc0-410c-8d03-36df4e521bf7 278ac783ad9eb0461eb141e59b9b5b61 {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.RNA-Seq.genomic.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.genomic.gdc_realn.bam 9376065416 BAM genomic harmonized CPTAC3 9e515b60-c193-49e0-a352-5ab4e043b528 ca7eeccaf39e2e13bd4888b299fa8957 {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.RNA-Seq.S17_L005_R1.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R1_001.fastq.gz 4646995701 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 f8f144f4-7082-4c4e-bbfc-422b4dfebf80 e0ea6adf4d9090de329c7025c7da07d6 {"aliquot_tag": "ALQ_5d91efc6", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.RNA-Seq.S17_L005_R2.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R2_001.fastq.gz 4922576827 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 ef16c400-6f72-4338-943e-25fe26327a3d 83c78f0346e1cd2b010bcfa360d5158f {"aliquot_tag": "ALQ_5d91efc6", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.RNA-Seq.S7_L002_R1.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 3650803514 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 fe41e3b3-3dfe-471a-909c-0cf299ff0708 9c8b748ef62ccceadadb70b7f4c80b87 {"aliquot_tag": "ALQ_1a319516", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.RNA-Seq.S7_L002_R2.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 4367339220 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 7650893e-2e98-4ac1-adbb-1e02d942a61d 733a3fab6e7528cc415c3623e1167fb4 {"aliquot_tag": "ALQ_1a319516", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.RNA-Seq.transcriptome.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.transcriptome.gdc_realn.bam 9227753472 BAM transcriptome harmonized CPTAC3 cadb1d9c-1348-41e9-b03b-a7c3c46667ee 842f271c9e0ccc161f74eabe2ba0e6d9 {"aliquot_tag": "ALQ_1a319516", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.RNA-Seq.transcriptome.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.transcriptome.gdc_realn.bam 13212002583 BAM transcriptome harmonized CPTAC3 c51b3a7d-bc2a-4725-8306-c105545a187b f175fba879cc2f070abd95b291eab41b {"aliquot_tag": "ALQ_5d91efc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.WGS.N C3L-05221 LSCC WGS blood_normal CPT0298260002 CPT0298260002.WholeGenome.RP-2158.bam 22543254031 BAM submitted_aligned CPTAC3 6fc63f53-736e-4508-8f63-fd2228c5c161 af9a936f245fb8331427f1437e0d111e {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05221.WGS.N.hg38 C3L-05221 LSCC WGS blood_normal CPT0298260002 7efd2357-2f36-4670-a8ab-4ec4a050505c_wgs_gdc_realn.bam 66900222214 BAM harmonized CPTAC3 bc4fff91-13c2-4c76-b669-6f556586d88e 39c3ac32b2328ef22d2864da975d06f5 {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05221.WGS.T C3L-05221 LSCC WGS tumor CPT0298140006 CPT0298140006.WholeGenome.RP-2158.bam 26197423404 BAM submitted_aligned CPTAC3 8c282023-004c-43b1-95e6-e441ac94356e 8cdfcfd6bb4bb0dce5029a55c9389177 {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.WGS.T.hg38 C3L-05221 LSCC WGS tumor CPT0298140006 9bce91ec-f097-488c-9886-3163d276fbb8_wgs_gdc_realn.bam 77795009663 BAM harmonized CPTAC3 72499411-41a2-4232-a610-13c98262b69e 7855edacfb8517960464be9557d5fa56 {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.WXS.A C3L-05221 LSCC WXS tissue_normal CPT0298170006 CPT0298170006.WholeExome.RP-1303.bam 20840313599 BAM submitted_aligned CPTAC3 cc3f2cef-cdb2-4998-9875-6b15f0295d66 b6371335b40542b9cfe7741383ed08e4 {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.WXS.A.hg38 C3L-05221 LSCC WXS tissue_normal CPT0298170006 62a0c6ee-5d54-47d4-844e-56764982a7ef_wxs_gdc_realn.bam 27828402850 BAM harmonized CPTAC3 08e9d74c-0e3d-47c8-b6f9-68787a026e4c 18bf23b656400ecbb3e8ca0805d770be {"aliquot_tag": "ALQ_8a8e8887", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05221.WXS.N C3L-05221 LSCC WXS blood_normal CPT0298260002 CPT0298260002.WholeExome.RP-1303.bam 32315288661 BAM submitted_aligned CPTAC3 b18d9853-dab7-476b-b102-1319c3b66d54 b976b11d36ac61690b94f4d393e50e82 {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05221.WXS.N.hg38 C3L-05221 LSCC WXS blood_normal CPT0298260002 7efd2357-2f36-4670-a8ab-4ec4a050505c_wxs_gdc_realn.bam 43742388791 BAM harmonized CPTAC3 cac12ff1-9cf3-4ac9-a7dd-2adb8cd0a538 46dfb640e10559eb7f9d40ca0546d5cf {"aliquot_tag": "ALQ_36171780", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05221.WXS.T C3L-05221 LSCC WXS tumor CPT0298140006 CPT0298140006.WholeExome.RP-1303.bam 20914443903 BAM submitted_aligned CPTAC3 47b2be8a-9dca-4a1b-88d0-886683fc7d53 1504c114940bf4898e3cf082ed9a8c8e {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05221.WXS.T.hg38 C3L-05221 LSCC WXS tumor CPT0298140006 9bce91ec-f097-488c-9886-3163d276fbb8_wxs_gdc_realn.bam 29170127974 BAM harmonized CPTAC3 384f17ce-d923-492a-8797-6a1cc214d6e4 a1b7c01709fa667d0e8ba34b4bd3a9ee {"aliquot_tag": "ALQ_cd2ef257", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.MethArray.Green.A C3L-05225 LSCC Methylation_Array tissue_normal CPT0296620006 204367490043_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fc70153c-f564-4189-9e4f-f282dffc8bb6 80811a722f6208be12aa6e4847142f7b {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.MethArray.Green.T C3L-05225 LSCC Methylation_Array tumor CPT0296570006 204367470127_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 e0e28bb1-5e9a-41f0-b768-4751b24678cd 2218201771da8148edfdf8651cce1705 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.MethArray.Red.A C3L-05225 LSCC Methylation_Array tissue_normal CPT0296620006 204367490043_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 962c368a-e66f-4fdd-a327-191bade4ad46 b1680b921cb1ad13c8cd54b5a17a4de0 {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.MethArray.Red.T C3L-05225 LSCC Methylation_Array tumor CPT0296570006 204367470127_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 489ddbdd-0ac6-4dee-b207-57348b451a9f 7fd7c10b6ff475430587c95161db8027 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.miRNA-Seq.A.hg38 C3L-05225 LSCC miRNA-Seq tissue_normal CPT0296620009 c3edcb7c-7d8f-4592-8110-6a612c194ed1_mirnaseq_gdc_realn.bam 241073081 BAM harmonized CPTAC3 72c885d8-c0e3-4280-9a23-79b869f4587b 7d2947180819212272477aeccaffb8cc {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.miRNA-Seq.S17_L005_R1.A C3L-05225 LSCC miRNA-Seq tissue_normal CPT0296620009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTAGAG_S17_L005_R1_001.unaln.bam 214693904 BAM S17_L005_R1 submitted_unaligned CPTAC3 382f9835-1260-45bc-b737-9e11cdd1be4f 12dbd31fea9ae888825f91866646d411 {"aliquot_tag": "ALQ_9feb5183", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.miRNA-Seq.S43_L007_R1.T C3L-05225 LSCC miRNA-Seq tumor CPT0296570009 200224_UNC31-K00269_0267_AHC722BBXY_TACAGC_S43_L007_R1_001.unaln.bam 209078641 BAM S43_L007_R1 submitted_unaligned CPTAC3 dcd7b867-b5ef-40cd-bd22-11ea8393c1df 6a4432dcfcf943dd8120c725660a6ea6 {"aliquot_tag": "ALQ_d19fac5d", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.miRNA-Seq.T.hg38 C3L-05225 LSCC miRNA-Seq tumor CPT0296570009 fa422711-a088-4ddc-b5c3-05158f13e275_mirnaseq_gdc_realn.bam 231859610 BAM harmonized CPTAC3 4bcd04dd-cd7e-412d-b407-db8cba3bd8b8 2f7ebf51b9d250f2fe790d8a73491f4d {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.RNA-Seq.chimeric.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.chimeric.gdc_realn.bam 31339617 BAM chimeric harmonized CPTAC3 425a7e66-8c7c-4f51-9f67-19d81880a742 b3bea689129dfa81e29a1ccfafd934b8 {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.RNA-Seq.chimeric.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.chimeric.gdc_realn.bam 30139205 BAM chimeric harmonized CPTAC3 7585ca0c-9528-4e92-b7f8-463da4f28e74 af7fb669a052ddea3ea3061470110055 {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.RNA-Seq.genomic.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.genomic.gdc_realn.bam 7620994435 BAM genomic harmonized CPTAC3 10bb42a9-074a-4f9c-8da1-2d8a0bfaf4b8 028550ed221cc9d2db6fbdc68cb5f11c {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.RNA-Seq.genomic.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.genomic.gdc_realn.bam 7706301994 BAM genomic harmonized CPTAC3 6f7a3fdc-c20e-4e04-97fb-ffba0d50e074 a07f8d9974f57efe77c8bad433e21ec9 {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.RNA-Seq.S11_L003_R1.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R1_001.fastq.gz 3827548599 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 e06570ec-7adf-4b8e-80ff-f70a7eec89b0 67663c6fefe4d4073c1a73b5702e5328 {"aliquot_tag": "ALQ_d19fac5d", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.RNA-Seq.S11_L003_R2.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R2_001.fastq.gz 4049671016 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 383d18bb-9260-4acc-a5b3-6e80e90d638c 0ae1740c194e6d5d1b2ea84ef1b0057c {"aliquot_tag": "ALQ_d19fac5d", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.RNA-Seq.S4_L001_R1.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R1_001.fastq.gz 3442419307 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 63c26280-83e5-40ef-90fa-dea67fca8d54 3b585578bc90a18e52d864419d0879a3 {"aliquot_tag": "ALQ_9feb5183", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.RNA-Seq.S4_L001_R2.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R2_001.fastq.gz 4166052663 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 2656afbf-4bb5-47df-882d-696754d8467c 974a43467ca2811f8eaa5eb525612995 {"aliquot_tag": "ALQ_9feb5183", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.RNA-Seq.transcriptome.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.transcriptome.gdc_realn.bam 8796588183 BAM transcriptome harmonized CPTAC3 998484b4-3146-4a19-a297-16933f297b27 c4d81da0bbf2bb567b6b69ad41fce4d5 {"aliquot_tag": "ALQ_9feb5183", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.RNA-Seq.transcriptome.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.transcriptome.gdc_realn.bam 11963071123 BAM transcriptome harmonized CPTAC3 612a7d94-58bb-4ea2-886b-5361aa6d12da 70c812d55a896c700d3e7579a006bb8c {"aliquot_tag": "ALQ_d19fac5d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.WGS.N C3L-05225 LSCC WGS blood_normal CPT0296690002 CPT0296690002.WholeGenome.RP-2158.bam 24312447365 BAM submitted_aligned CPTAC3 a82d3175-e8fd-49cc-9690-82aaf509900c f7a0efcc5025ea374d50d01484a13186 {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05225.WGS.N C3L-05225 LSCC WGS blood_normal CPT0296690002 CPT0296690002.WholeGenome.RP-2158.bam 24349130461 BAM submitted_aligned CPTAC3 8b8d2e54-0b9f-4416-9222-064df84934f2 8f36aba81e2c64ba144afde152f85b32 {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-05225.WGS.N.hg38 C3L-05225 LSCC WGS blood_normal CPT0296690002 3b73345c-6a2e-4042-8cc9-0e55329d9058_wgs_gdc_realn.bam 72783765413 BAM harmonized CPTAC3 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 2b73c8fd0115445950fac62db5f6bce3 {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05225.WGS.T C3L-05225 LSCC WGS tumor CPT0296570006 CPT0296570006.WholeGenome.RP-2158.bam 24721244623 BAM submitted_aligned CPTAC3 09238d79-48b5-4c48-9bb2-1d590a96fdb7 186acfe93838890615d3a7cd95cea1d9 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.WGS.T.hg38 C3L-05225 LSCC WGS tumor CPT0296570006 81cdcf02-73f2-42cc-9306-818c9c6869ae_wgs_gdc_realn.bam 72293079183 BAM harmonized CPTAC3 03956b75-1a7a-4dda-aec7-6efa70957bc1 20bc654bb10d11a16ace40fbda068dc8 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.WXS.A C3L-05225 LSCC WXS tissue_normal CPT0296620006 CPT0296620006.WholeExome.RP-1303.bam 34160697217 BAM submitted_aligned CPTAC3 d51787a4-cf91-41ca-a2ce-308282e93fd0 fccbccbac01a2184672cc2a8075281ea {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.WXS.A.hg38 C3L-05225 LSCC WXS tissue_normal CPT0296620006 47465d24-0a65-4c31-958c-92fd92644dbd_wxs_gdc_realn.bam 47004252667 BAM harmonized CPTAC3 d88bfb84-810b-41dd-9a57-842c4047a2bb 9a721cb577a64a0e70c8f375145aeb93 {"aliquot_tag": "ALQ_f544c12", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05225.WXS.N C3L-05225 LSCC WXS blood_normal CPT0296690002 CPT0296690002.WholeExome.RP-1303.bam 23421613179 BAM submitted_aligned CPTAC3 ff3e74d6-38f7-47cb-8ac2-ab3179fab838 c94fcc8a130221e9936adcfe21f14a6f {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05225.WXS.N.hg38 C3L-05225 LSCC WXS blood_normal CPT0296690002 3b73345c-6a2e-4042-8cc9-0e55329d9058_wxs_gdc_realn.bam 32473818430 BAM harmonized CPTAC3 19f20d7b-086d-4040-9f9c-dd17e2fe5017 efbebb2966aedd825c30d15513d67e6c {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05225.WXS.T C3L-05225 LSCC WXS tumor CPT0296570006 CPT0296570006.WholeExome.RP-1303.bam 19475882881 BAM submitted_aligned CPTAC3 987e1444-ba3d-41f6-b6c2-ed0e9392416f 20deaa0b8dbf19f272d23fa389b477d3 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05225.WXS.T.hg38 C3L-05225 LSCC WXS tumor CPT0296570006 81cdcf02-73f2-42cc-9306-818c9c6869ae_wxs_gdc_realn.bam 26692348336 BAM harmonized CPTAC3 cff5ad7d-816f-4f8f-b919-f96dbac7cbe2 b500bdf342dad6eafce479c71e67f1ab {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.MethArray.Green.T C3L-05239 GBM Methylation_Array tumor CPT0346710006 204930640083_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 226f5aee-f475-42e4-97b9-88fa6b51c92f 6889df0f9206dd1e4cf16d995314ad56 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.MethArray.Red.T C3L-05239 GBM Methylation_Array tumor CPT0346710006 204930640083_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 22d11f1e-80cd-4521-84c0-8cf623ec19fc 81df0570b493ef831814ea12a6fb2176 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.miRNA-Seq.S23_L007_R1.T C3L-05239 GBM miRNA-Seq tumor CPT0346710009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTTGA_S23_L007_R1_001.unaln.bam 218458045 BAM S23_L007_R1 submitted_unaligned CPTAC3 9dea0013-93dc-4c87-bdc8-bc98d18238bf 4089d0052e0ac168b4411703515ed4b0 {"aliquot_tag": "ALQ_9f69f964", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.miRNA-Seq.T.hg38 C3L-05239 GBM miRNA-Seq tumor CPT0346710009 bc919f06-ae10-44e3-8218-f88fb03e2a9d_mirnaseq_gdc_realn.bam 251913789 BAM harmonized CPTAC3 a5ad09b9-b8a1-4f61-9ab2-50d7e363db09 806b9d9260508fd091e4716b54f94152 {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.RNA-Seq.chimeric.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.chimeric.gdc_realn.bam 72939404 BAM chimeric harmonized CPTAC3 95f1ed81-a1da-4e5b-801e-a17a0936856b c4bd68e2257069797b3388305021cd87 {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.RNA-Seq.genomic.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.genomic.gdc_realn.bam 7856464192 BAM genomic harmonized CPTAC3 3de099eb-d3fb-47b0-9fb6-955a5c291dcb a4e9a6a99f6a120d707794d21b0489af {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.RNA-Seq.S4_L001_R1.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 8161f3a1-1b1a-442f-aaf3-faabd976c99a 017652ccbf783557146fac20f6b01bfe {"aliquot_tag": "ALQ_9f69f964", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.RNA-Seq.S4_L001_R2.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 b2cc1d59-536e-4c59-89df-f6808282e91f caab0a5abb6f92364ade534073d9ad61 {"aliquot_tag": "ALQ_9f69f964", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.RNA-Seq.transcriptome.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.transcriptome.gdc_realn.bam 9662306410 BAM transcriptome harmonized CPTAC3 80694eea-cf08-49d6-8b87-1967867fb091 a4367b85c6c52c5cec2623f3e0ce71a6 {"aliquot_tag": "ALQ_9f69f964", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.WGS.N C3L-05239 GBM WGS blood_normal CPT0346770002 CPT0346770002.WholeGenome.RP-2158.bam 24306484177 BAM submitted_aligned CPTAC3 f50882a9-ba11-46d8-8ae1-b3db9fe73ca6 9e50f542d916427f958a5d28b4fafbd1 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05239.WGS.N.hg38 C3L-05239 GBM WGS blood_normal CPT0346770002 445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 69573503614 BAM harmonized CPTAC3 74558bd0-2f33-412a-acc6-0274e7abf989 592e4c0fb664a87b17148297475e7236 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05239.WGS.T C3L-05239 GBM WGS tumor CPT0346710006 CPT0346710006.WholeGenome.RP-2158.bam 23404612085 BAM submitted_aligned CPTAC3 5f728e2a-492a-4fd8-b33a-3cfd30bba9cf 0e484ffc3e5d09555523e7ddc81bd1f4 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.WGS.T.hg38 C3L-05239 GBM WGS tumor CPT0346710006 7afb0ddf-9395-4033-a349-4d98081ffbe8_wgs_gdc_realn.bam 68789425438 BAM harmonized CPTAC3 ec7424a2-cc70-4745-8abf-830399c53864 38fefd4fd6d70209af73470f73c65426 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.WXS.N C3L-05239 GBM WXS blood_normal CPT0346770002 CPT0346770002.WholeExome.RP-1303.bam 19041494244 BAM submitted_aligned CPTAC3 e8806b58-3c7b-4542-bba9-fb85d3bcd231 6597ef1065aad1aa88005ad879145822 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05239.WXS.N.hg38 C3L-05239 GBM WXS blood_normal CPT0346770002 445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wxs_gdc_realn.bam 25443004274 BAM harmonized CPTAC3 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb 194348106658a2114010e8684763c283 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-05239.WXS.T C3L-05239 GBM WXS tumor CPT0346710006 CPT0346710006.WholeExome.RP-1303.bam 18743445741 BAM submitted_aligned CPTAC3 12ae1706-4063-446f-931a-67559587801f 1578bf468e186202b42f5367283f3647 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05239.WXS.T.hg38 C3L-05239 GBM WXS tumor CPT0346710006 7afb0ddf-9395-4033-a349-4d98081ffbe8_wxs_gdc_realn.bam 25755214142 BAM harmonized CPTAC3 73dcd24f-0fde-46b2-a48b-11f402c43c99 c81d319fc4c41491f322ebac125befcf {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-05313.MethArray.Green.Tbm C3L-05313 AML Methylation_Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9e98c5b1-2086-4e5a-8b12-30aafe032714 a813f48a25061f5701bb57d02dde6ea8 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.MethArray.Red.Tbm C3L-05313 AML Methylation_Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 f5035698-fc64-4ca3-b505-56bed0caa3a2 875dc99237001389f8a6b13cb0459a0b {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.miRNA-Seq.S31_L007_R1.Tbm C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGAAG_S31_L007_R1_001.unaln.bam 405396432 BAM S31_L007_R1 submitted_unaligned CPTAC3 ec6361e3-7777-40c7-8e73-38739400b11a 9f0e2b6ad6e42f549b2c3911a0b3dd36 {"aliquot_tag": "ALQ_898eb3d6", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05313.miRNA-Seq.Tbm.hg38 C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 97ad778f-cd64-4652-a373-63179a34d3c2_mirnaseq_gdc_realn.bam 437640768 BAM harmonized CPTAC3 0873d890-6ef0-4f16-a8b1-bc97f7c23218 7d6ac3aca35c72a47aba91c9ee35ea83 {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05313.RNA-Seq.chimeric.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.chimeric.gdc_realn.bam 132251437 BAM chimeric harmonized CPTAC3 8f20a383-6ed9-4981-bac6-6463b6516b12 d3a19b006f15646bd32d0a6e126a4929 {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.RNA-Seq.genomic.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.genomic.gdc_realn.bam 8552882138 BAM genomic harmonized CPTAC3 01fb2668-aa9e-49e2-ae91-f8b93af2c23e 3dc2501d4e8497be9534feb523f89bdc {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.RNA-Seq.S16_L004_R1.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R1_001.fastq.gz 4426516378 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 88212c9f-4a92-44be-acaa-3ff7e515ee07 78ad3daa211f11245e891c423156188e {"aliquot_tag": "ALQ_898eb3d6", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05313.RNA-Seq.S16_L004_R2.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R2_001.fastq.gz 4697624199 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 a0bd7490-d7d8-4aa5-b785-90cb8408f484 24fe52482ff314f4574b6ddc268e6e95 {"aliquot_tag": "ALQ_898eb3d6", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05313.RNA-Seq.transcriptome.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.transcriptome.gdc_realn.bam 8635622276 BAM transcriptome harmonized CPTAC3 08410444-13a8-49dc-a325-8bfdd4caf61a be541e1f856b6f9b94ee8efc52a4985a {"aliquot_tag": "ALQ_898eb3d6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.WGS.Tbm C3L-05313 AML WGS tumor_bone_marrow CPT0339580002 CPT0339580002.WholeGenome.RP-2158.bam 68561792756 BAM submitted_aligned CPTAC3 4faf5877-daea-4066-b364-46dbd29478c8 d3d7ef88749ad4f9a16be96f2061b2f5 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.WGS.Tbm.hg38 C3L-05313 AML WGS tumor_bone_marrow CPT0339580002 3c8e4bcf-3953-4404-8302-d3372072fe80_wgs_gdc_realn.bam 203810420083 BAM harmonized CPTAC3 7195342a-8050-4081-a400-40b6a592fa40 bb992cccaeea48c1b6c56df5cefe3ce0 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.WXS.Nbc C3L-05313 AML WXS buccal_normal CPT0339550004 CPT0339550004.WholeExome.RP-1303.bam 28056169993 BAM submitted_aligned CPTAC3 df53743f-987e-4635-8ca7-06f2645d1014 db1d4308d565868dc7f139df2106b174 {"aliquot_tag": "ALQ_a51dfbe2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05313.WXS.Nbc.hg38 C3L-05313 AML WXS buccal_normal CPT0339550004 fa3f28fc-ae10-4dae-af06-1d3e70583d71_wxs_gdc_realn.bam 38503948892 BAM harmonized CPTAC3 ae1d8fd4-9a96-4d17-a889-ded2269865bf a3ca843bf761a51e9169178aba36c076 {"aliquot_tag": "ALQ_a51dfbe2", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05313.WXS.Tbm C3L-05313 AML WXS tumor_bone_marrow CPT0339580002 CPT0339580002.WholeExome.RP-1303.bam 20636515890 BAM submitted_aligned CPTAC3 52be19a7-dec7-4d31-84fe-642df5fe9e13 220618f88b85d67754b6de1b064f279e {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05313.WXS.Tbm.hg38 C3L-05313 AML WXS tumor_bone_marrow CPT0339580002 3c8e4bcf-3953-4404-8302-d3372072fe80_wxs_gdc_realn.bam 28091554825 BAM harmonized CPTAC3 9adefebd-3464-4c31-985f-06e98af14df1 b5cbe9a44eeb62a2d90cc99ded158be4 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05315.MethArray.Green.Tpb C3L-05315 AML Methylation_Array tumor_peripheral_blood CPT0340590002 205705520128_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 375cb4e6-c8ce-4942-ba76-7b9b5ed427d0 acd1f6621d8d3a92d34d7a14a77cba18 {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.MethArray.Red.Tpb C3L-05315 AML Methylation_Array tumor_peripheral_blood CPT0340590002 205705520128_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 556a0fa2-2bbf-4ead-8a50-aa512ff09985 ff5a5ddfe9dd66ef2a153f4a1325e6d3 {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.miRNA-Seq.S23_L001_R1.Tpb C3L-05315 AML miRNA-Seq tumor_peripheral_blood CPT0340600002 220125_UNC32-K00270_0311_AHMNYYBBXY_TTAGGC_S23_L001_R1_001.unaln.bam 296859760 BAM S23_L001_R1 submitted_unaligned CPTAC3 0b8d5af6-c18f-46df-9654-f9770f0b9762 aba7c575ae64026ecc648e8f2b374ec3 {"aliquot_tag": "ALQ_9d57efc3", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.miRNA-Seq.Tpb.hg38 C3L-05315 AML miRNA-Seq tumor_peripheral_blood CPT0340600002 4b5a3b0f-0ebb-49b7-abb7-dbb8588847c5_mirnaseq_gdc_realn.bam 319473706 BAM harmonized CPTAC3 4f5cd1ae-07ec-4732-b440-7aee2e2c63b9 3914eab86296a1328bb8a36249d88835 {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.RNA-Seq.chimeric.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.chimeric.gdc_realn.bam 754850786 BAM chimeric harmonized CPTAC3 82e0256e-d5d9-4e8a-9969-3ca470cc49b7 f3163b2a383d3f09148fd7c55fe77b3e {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.RNA-Seq.genomic.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.genomic.gdc_realn.bam 8034997757 BAM genomic harmonized CPTAC3 585f3edb-394d-4f10-a04a-f82d4b64a27a 024d972afdbc02e96d3e170310fb6d96 {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.RNA-Seq.S32_L008_R1.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R1_001.fastq.gz 3912388792 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 20e0a682-ec84-4c52-85ca-70f82abf6c2a f5fddb98790cb8c3e8415f697ebdf63a {"aliquot_tag": "ALQ_9d57efc3", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.RNA-Seq.S32_L008_R2.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R2_001.fastq.gz 4291270091 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 19b29761-1f21-4660-80e5-6d704f08a5be bda24fd7bb51da710a2eaa4ec85c3bce {"aliquot_tag": "ALQ_9d57efc3", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.RNA-Seq.transcriptome.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.transcriptome.gdc_realn.bam 7619133973 BAM transcriptome harmonized CPTAC3 f784f1be-5664-4cc8-a4c1-8f7a3c1a5795 7004d8e68ece1e533b8c0ca95c6e06d5 {"aliquot_tag": "ALQ_9d57efc3", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.WGS.Tpb C3L-05315 AML WGS tumor_peripheral_blood CPT0340590002 CPT0340590002.WholeGenome.RP-2158.bam 54765078682 BAM submitted_aligned CPTAC3 95c8c488-a602-4043-9590-6d33e89a7a75 5d22fba6523678c132c136a0330ec10c {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.WGS.Tpb.hg38 C3L-05315 AML WGS tumor_peripheral_blood CPT0340590002 32a00e9b-b7e7-4976-bf87-99ba02a48559_wgs_gdc_realn.bam 158756562946 BAM harmonized CPTAC3 586eec3c-85ac-444a-bac0-6663471a2ed1 348a46f92da76f44210dc05c8e0ee47e {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.WXS.Nbc C3L-05315 AML WXS buccal_normal CPT0340560004 CPT0340560004.WholeExome.RP-1303.bam 20309279475 BAM submitted_aligned CPTAC3 cf5c3c46-0a39-4c83-95bb-db37ade136e2 2a4ee0a9c9ae7bbcbb7b430f7cb88685 {"aliquot_tag": "ALQ_7de0cdf8", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05315.WXS.Nbc.hg38 C3L-05315 AML WXS buccal_normal CPT0340560004 e09622f7-f63a-4a40-ad7e-fef31bbcbb83_wxs_gdc_realn.bam 81819332650 BAM harmonized CPTAC3 a6f0dd60-9ac1-43b3-b30e-7b75c626e851 58f70b5d1c89176afff361cd230e2d0d {"aliquot_tag": "ALQ_7de0cdf8", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05315.WXS.Tpb C3L-05315 AML WXS tumor_peripheral_blood CPT0340590002 CPT0340590002.WholeExome.RP-1303.bam 24482817213 BAM submitted_aligned CPTAC3 ba523803-92b1-42b7-a923-dce29d55cfbe 15d69be732dc3b212e285d13aeefcfa0 {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05315.WXS.Tpb.hg38 C3L-05315 AML WXS tumor_peripheral_blood CPT0340590002 32a00e9b-b7e7-4976-bf87-99ba02a48559_wxs_gdc_realn.bam 33836991288 BAM harmonized CPTAC3 312fb399-0a32-4a1e-b744-317107e70d5e 4f9f550db858255dbbb33d3077c7cc1f {"aliquot_tag": "ALQ_16d3ff1c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05316.MethArray.Green.Tbm C3L-05316 AML Methylation_Array tumor_bone_marrow CPT0339720002 204930640111_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 ab388d39-cf07-44f9-a049-e3aab0950dbe 7aa07b139acac5e6a7025791bf28d61f {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.MethArray.Red.Tbm C3L-05316 AML Methylation_Array tumor_bone_marrow CPT0339720002 204930640111_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 a95b2bd4-a399-4221-9a96-5c73568e04b5 f398698eb222117c15c81d9a7d2c71d1 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.miRNA-Seq.S32_L007_R1.Tbm C3L-05316 AML miRNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGGCA_S32_L007_R1_001.unaln.bam 319441133 BAM S32_L007_R1 submitted_unaligned CPTAC3 e792ac23-2179-4493-bf02-860f29c3f9df 8d25b3d2cc84f5c063059137d1bf3a7c {"aliquot_tag": "ALQ_8ef60a7c", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05316.miRNA-Seq.Tbm.hg38 C3L-05316 AML miRNA-Seq tumor_bone_marrow CPT0339730002 33a3327f-497f-4099-84cc-5e62bf9f79a9_mirnaseq_gdc_realn.bam 343653286 BAM harmonized CPTAC3 fe008aa2-08c2-4097-a535-0493402373b2 597dab224d9cc0c7d5d90da2864f7cde {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.RNA-Seq.chimeric.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.chimeric.gdc_realn.bam 102916973 BAM chimeric harmonized CPTAC3 9cffd4b8-254c-4584-b3cc-8cf1aad9d13f f863acec2f90f42f20a2cd9dc32a3a3d {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.RNA-Seq.genomic.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.genomic.gdc_realn.bam 8282260950 BAM genomic harmonized CPTAC3 6409e8f4-392d-4b76-8619-83cc5ff8ad37 4de76a0ac1e7d21296f5314eab2d45ec {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.RNA-Seq.S14_L004_R1.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R1_001.fastq.gz 4194153238 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 fd3abe1d-c01d-4172-8a82-79a924db13a6 a1a126db9664b12713254c78b5d63eff {"aliquot_tag": "ALQ_8ef60a7c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05316.RNA-Seq.S14_L004_R2.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R2_001.fastq.gz 4492439260 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 306fd8bf-45ab-4a9a-abb2-e0bf1cd11927 b0cbb0f05f7b73b94d7ee9142ef91833 {"aliquot_tag": "ALQ_8ef60a7c", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05316.RNA-Seq.transcriptome.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.transcriptome.gdc_realn.bam 8936707767 BAM transcriptome harmonized CPTAC3 b1de04c8-8ff0-4625-9b16-c140ad38a048 10923b07500a6ee6d16b0e6818aafd9b {"aliquot_tag": "ALQ_8ef60a7c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.WGS.Tbm C3L-05316 AML WGS tumor_bone_marrow CPT0339720002 CPT0339720002.WholeGenome.RP-2158.bam 40220969326 BAM submitted_aligned CPTAC3 7ecb1ea9-cc31-45a7-ba85-5778952d3db6 eef3a35ef4416ec8460f1705529374c9 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.WGS.Tbm.hg38 C3L-05316 AML WGS tumor_bone_marrow CPT0339720002 f0b9d521-c9f4-4f90-9d64-6197ac84f000_wgs_gdc_realn.bam 121441730666 BAM harmonized CPTAC3 70d364ce-ac03-46ec-973b-fe5232a944e6 dc4fbadb83c0799bd494174059445963 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.WXS.Nbc C3L-05316 AML WXS buccal_normal CPT0339690004 CPT0339690004.WholeExome.RP-1303.bam 29875616363 BAM submitted_aligned CPTAC3 08f2d4a3-e94e-4fc6-9a21-483a0700ac57 a6144baaa8ccb24f33505244bbe67185 {"aliquot_tag": "ALQ_e679644d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05316.WXS.Nbc.hg38 C3L-05316 AML WXS buccal_normal CPT0339690004 fd86394a-4e44-4f82-a775-dc9e33f61b0a_wxs_gdc_realn.bam 40974285867 BAM harmonized CPTAC3 955c07ff-fa9a-4d95-b6f6-325d943e8ffb f2bf76adfc9ead78ea403242cdfe9b3c {"aliquot_tag": "ALQ_e679644d", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05316.WXS.Tbm C3L-05316 AML WXS tumor_bone_marrow CPT0339720002 CPT0339720002.WholeExome.RP-1303.bam 25609332514 BAM submitted_aligned CPTAC3 799df73d-a072-436c-8473-94cece4ac4ce dd475d6254de0f6b23bddf8f1779590d {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05316.WXS.Tbm.hg38 C3L-05316 AML WXS tumor_bone_marrow CPT0339720002 f0b9d521-c9f4-4f90-9d64-6197ac84f000_wxs_gdc_realn.bam 35021016231 BAM harmonized CPTAC3 b48e68e0-d386-4275-a3f4-00e3724bdf80 1bff0c8e6be27122e79f53eed4bf0cf8 {"aliquot_tag": "ALQ_b39623cc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05317.MethArray.Green.Tpb C3L-05317 AML Methylation_Array tumor_peripheral_blood CPT0340740002 205987780094_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 033a65d6-1238-4491-837f-9b57d17f9dd1 0f53d0ff24009d1534b1352a02605e7a {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.MethArray.Red.Tpb C3L-05317 AML Methylation_Array tumor_peripheral_blood CPT0340740002 205987780094_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 3e0dc305-b8a8-4ca8-bb66-8bdccfd0bbd8 161570b33c3449204104eab26657b1e5 {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.miRNA-Seq.S15_L001_R1.Tpb C3L-05317 AML miRNA-Seq tumor_peripheral_blood CPT0340750002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAATCG_S15_L001_R1_001.unaln.bam 242521533 BAM S15_L001_R1 submitted_unaligned CPTAC3 06c4f3af-90f4-47ff-8a6a-86eea367d579 f31255aaa8f5f6f80732986225f5522c {"aliquot_tag": "ALQ_9eebb316", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.miRNA-Seq.Tpb.hg38 C3L-05317 AML miRNA-Seq tumor_peripheral_blood CPT0340750002 2cf8ddc8-c81d-46f9-82bb-635e71d8ee1c_mirnaseq_gdc_realn.bam 266037448 BAM harmonized CPTAC3 8ec7acab-fc2f-420b-8bd0-eb65f0d430b5 75235f27fbcffd9a62afe2e8929cf2d5 {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.RNA-Seq.chimeric.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.chimeric.gdc_realn.bam 933603543 BAM chimeric harmonized CPTAC3 c8816a66-bfe1-4288-a097-935aa38db021 94800c42b44d4276cec154881cb36bbe {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.RNA-Seq.genomic.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.genomic.gdc_realn.bam 8473288495 BAM genomic harmonized CPTAC3 aa6ace1f-f6bc-4dbc-a18b-29aaef0ee46e be085fa8fe49fadf8fff506be31dbafc {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.RNA-Seq.S18_L005_R1.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R1_001.fastq.gz 3995264696 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 96cae845-892d-45b4-82dd-abbb829ac7a0 ff984bc46734b006c6b04503197ad7df {"aliquot_tag": "ALQ_9eebb316", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.RNA-Seq.S18_L005_R2.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R2_001.fastq.gz 4337475499 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 046e7c55-40fa-4464-8f56-7d45d33a0f08 f0d0e70bf20853284496ba175dd1c031 {"aliquot_tag": "ALQ_9eebb316", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.RNA-Seq.transcriptome.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.transcriptome.gdc_realn.bam 8102540872 BAM transcriptome harmonized CPTAC3 0f59a6e4-0545-4257-9910-7cf4752abab1 87f11cf8d02e1d69fc4fe904ce1dce98 {"aliquot_tag": "ALQ_9eebb316", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.WGS.Nbc C3L-05317 AML WGS buccal_normal CPT0340710002 CPT0340710002.WholeGenome.RP-2158.bam 52305022243 BAM submitted_aligned CPTAC3 e71138fc-526c-4c9b-aa84-624078b2c219 3cb65ef5b49cddf5cce67bed399f401e {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05317.WGS.Nbc.hg38 C3L-05317 AML WGS buccal_normal CPT0340710002 564be77b-0307-454f-9977-800641a0f88f_wgs_gdc_realn.bam 161842268298 BAM harmonized CPTAC3 8169035d-610e-4406-a2bf-0252251f2300 ea08ead4e27679e3407eafc533134b50 {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05317.WGS.Tpb C3L-05317 AML WGS tumor_peripheral_blood CPT0340740002 CPT0340740002.WholeGenome.RP-2158.bam 44040100557 BAM submitted_aligned CPTAC3 49c0b028-777b-474d-95c1-419c4a83cfd9 3cf25d6f9eb7d61b2b7bc2e0bab5647f {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.WGS.Tpb.hg38 C3L-05317 AML WGS tumor_peripheral_blood CPT0340740002 d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wgs_gdc_realn.bam 135046354348 BAM harmonized CPTAC3 106a273c-f44a-47df-b769-0f5969ede688 737085d327a22bacd77586207f7d24cd {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.WXS.Nbc C3L-05317 AML WXS buccal_normal CPT0340710002 CPT0340710002.WholeExome.RP-1303.bam 30347765365 BAM submitted_aligned CPTAC3 a5fd0121-ceca-4db1-b983-e216ad1663a4 0041eb1283aa96aed7d611fe1f0d9bdb {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05317.WXS.Nbc.hg38 C3L-05317 AML WXS buccal_normal CPT0340710002 564be77b-0307-454f-9977-800641a0f88f_wxs_gdc_realn.bam 42041208181 BAM harmonized CPTAC3 a46cc866-2de4-46d9-b8dd-88e6b91c83f5 76940f07836a1341ea3aa7a8e15281dd {"aliquot_tag": "ALQ_6b6b15d6", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05317.WXS.Tpb C3L-05317 AML WXS tumor_peripheral_blood CPT0340740002 CPT0340740002.WholeExome.RP-1303.bam 26617492851 BAM submitted_aligned CPTAC3 678c17e3-18fc-47da-9a98-01d6aca93136 8f333e389b8c371a0012e8080e14acba {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05317.WXS.Tpb.hg38 C3L-05317 AML WXS tumor_peripheral_blood CPT0340740002 d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wxs_gdc_realn.bam 36668438169 BAM harmonized CPTAC3 5513bf66-0b2c-4ef1-850b-6de5c1882efd a81d5ef237d47639d1eccc46562e0685 {"aliquot_tag": "ALQ_a38b9aa6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05318.MethArray.Green.Tpb C3L-05318 AML Methylation_Array tumor_peripheral_blood CPT0340190002 205705520128_R03C01_Grn.idat 13677886 IDAT Green NA CPTAC3 b9e98634-da59-4036-953f-269fd2012dc1 c912e087fa9d25d3051d58a4e9f668fe {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.MethArray.Red.Tpb C3L-05318 AML Methylation_Array tumor_peripheral_blood CPT0340190002 205705520128_R03C01_Red.idat 13677886 IDAT Red NA CPTAC3 c71c9941-315e-426f-839b-9fed27512513 fe77c703615d3c1f5e928c2cc5556a3e {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.miRNA-Seq.S21_L001_R1.Tpb C3L-05318 AML miRNA-Seq tumor_peripheral_blood CPT0340200002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGGCA_S21_L001_R1_001.unaln.bam 194387641 BAM S21_L001_R1 submitted_unaligned CPTAC3 c3b50536-46ed-4427-b694-5714dcb2cbd8 68bc1fe8d0f49508817c9c9fb1cfbae3 {"aliquot_tag": "ALQ_6c6add5", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.miRNA-Seq.Tpb.hg38 C3L-05318 AML miRNA-Seq tumor_peripheral_blood CPT0340200002 f730f965-8fa3-4373-88df-382c6d882c1b_mirnaseq_gdc_realn.bam 213713983 BAM harmonized CPTAC3 c24d3fda-f4dc-422c-a834-1cdf8f331941 37d0661c44b34c8551c0d359f85fc93f {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.RNA-Seq.chimeric.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.chimeric.gdc_realn.bam 841533337 BAM chimeric harmonized CPTAC3 012552a6-d91f-407b-8e37-0ef5b316f66d 441bba81075bc366861baef363292e3d {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.RNA-Seq.genomic.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.genomic.gdc_realn.bam 9265027028 BAM genomic harmonized CPTAC3 978a0c15-abb0-405b-b2bd-efc929ecccf6 65a5816d716ec90360e6fb2a42e8584d {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.RNA-Seq.S26_L007_R1.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R1_001.fastq.gz 4328353401 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 85c6c9ac-1d34-446a-9da4-27b08104b1d3 292e2b306f69685e52dee93a33a6f5ac {"aliquot_tag": "ALQ_6c6add5", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.RNA-Seq.S26_L007_R2.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R2_001.fastq.gz 4763712926 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 f0c73973-b3fc-4da0-9255-9d0f251fa09a e25d246b80fffdd39e9806769731210d {"aliquot_tag": "ALQ_6c6add5", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.RNA-Seq.transcriptome.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.transcriptome.gdc_realn.bam 7605434977 BAM transcriptome harmonized CPTAC3 fcfb2ace-343a-4e7c-86f5-4694107ef409 f9487dd41f5b3b2f32e9a708296473e4 {"aliquot_tag": "ALQ_6c6add5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.WGS.Tpb C3L-05318 AML WGS tumor_peripheral_blood CPT0340190002 CPT0340190002.WholeGenome.RP-2158.bam 58942718796 BAM submitted_aligned CPTAC3 bf6aca8c-fef7-4cf5-a722-107b20aae057 b5ff189fdccb5797c369f446a63295a9 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.WGS.Tpb.hg38 C3L-05318 AML WGS tumor_peripheral_blood CPT0340190002 b130869f-200a-4b0b-bb14-c216e8a8d8d3_wgs_gdc_realn.bam 513896838412 BAM harmonized CPTAC3 0b41440a-1550-4ee1-b2ec-878717972e62 9a93f0c2a78a74c399f67c92029c9734 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.WXS.Nbc C3L-05318 AML WXS buccal_normal CPT0343360004 CPT0343360004.WholeExome.RP-1303.bam 27845411016 BAM submitted_aligned CPTAC3 d838b0db-3190-4ef2-9b81-3aa92668165b 1316e2933d785b3c9a6da8eb14f0469f {"aliquot_tag": "ALQ_9a513478", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05318.WXS.Nbc.hg38 C3L-05318 AML WXS buccal_normal CPT0343360004 555827ed-b7e8-44b0-9a30-f7cb9267d605_wxs_gdc_realn.bam 37563262859 BAM harmonized CPTAC3 d6e2c490-ffcc-464c-ad86-a7d4f73cb390 831156a879cef20541fd3bda429bb3ee {"aliquot_tag": "ALQ_9a513478", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05318.WXS.Tpb C3L-05318 AML WXS tumor_peripheral_blood CPT0340190002 CPT0340190002.WholeExome.RP-1303.bam 23566723323 BAM submitted_aligned CPTAC3 01ab7b59-5883-4b12-a7c7-bcdf32b9e026 f667b06c0befedced8f21890c8d35771 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05318.WXS.Tpb.hg38 C3L-05318 AML WXS tumor_peripheral_blood CPT0340190002 b130869f-200a-4b0b-bb14-c216e8a8d8d3_wxs_gdc_realn.bam 33010345230 BAM harmonized CPTAC3 055faaab-28cb-4c6d-9fce-3fad493b76cb 798a1ee4dfef42864e2fb77ff466c201 {"aliquot_tag": "ALQ_8d42bd0a", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05320.MethArray.Green.Tpb C3L-05320 AML Methylation_Array tumor_peripheral_blood CPT0339870002 205987780101_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 81adf049-68f4-464b-bc6a-4b4928b439a0 e60378f46e297bfbbe46a098146fda5e {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.MethArray.Red.Tpb C3L-05320 AML Methylation_Array tumor_peripheral_blood CPT0339870002 205987780101_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 1f2367b0-3980-4644-9c73-4788cb6ccddd 1591556668df5ee493504e33fefaf2b3 {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.miRNA-Seq.S20_L001_R1.Tpb C3L-05320 AML miRNA-Seq tumor_peripheral_blood CPT0339880002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGAAG_S20_L001_R1_001.unaln.bam 210101213 BAM S20_L001_R1 submitted_unaligned CPTAC3 f6fa8507-e7fa-4244-8017-3a4e00dcb87e 29add84e18e2ce90e204be22e2505601 {"aliquot_tag": "ALQ_87089b8", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.miRNA-Seq.Tpb.hg38 C3L-05320 AML miRNA-Seq tumor_peripheral_blood CPT0339880002 f882a493-cb3d-43eb-a1d1-97f678b8f2e9_mirnaseq_gdc_realn.bam 235005872 BAM harmonized CPTAC3 72fab87e-05dc-402b-b2b4-9450b1b142d8 06c177a20fef2f6ad74d9f7e715560b4 {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.RNA-Seq.chimeric.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.chimeric.gdc_realn.bam 445419065 BAM chimeric harmonized CPTAC3 ae774898-a06c-47ec-8999-7d38f3901e23 4018eaab1877cfd9bd71280900fd0cb0 {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.RNA-Seq.genomic.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.genomic.gdc_realn.bam 7822584363 BAM genomic harmonized CPTAC3 b72c76de-9539-4bf9-85b6-5bc3940cf11c ca60c4c78f41b01943c43129290f47f1 {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.RNA-Seq.S28_L007_R1.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R1_001.fastq.gz 3894682572 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 58fe5b7e-1e2b-4b7b-8160-ff95ac1e8243 ff9b0461ffe243bc012031a76db6b50a {"aliquot_tag": "ALQ_87089b8", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.RNA-Seq.S28_L007_R2.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R2_001.fastq.gz 4193776141 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 7b34f245-fca8-4c20-af9e-b8b66f6dfac3 7c98f269a69536b9758191d9dd3a82e6 {"aliquot_tag": "ALQ_87089b8", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.RNA-Seq.transcriptome.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.transcriptome.gdc_realn.bam 10534420855 BAM transcriptome harmonized CPTAC3 b7532d85-a94b-408f-b4b4-6b62488e9a8a f1b18066f834b890843f3c51117aa82c {"aliquot_tag": "ALQ_87089b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.WGS.Tpb C3L-05320 AML WGS tumor_peripheral_blood CPT0339870002 CPT0339870002.WholeGenome.RP-2158.bam 51258922514 BAM submitted_aligned CPTAC3 b938b0f8-0703-4df4-add4-b4be2240c7e5 5748b06c441326f6904e83762fe03eb5 {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.WGS.Tpb.hg38 C3L-05320 AML WGS tumor_peripheral_blood CPT0339870002 d63123be-df53-4296-b83a-11f2fa243e86_wgs_gdc_realn.bam 452759477752 BAM harmonized CPTAC3 7803bc8c-d6d0-4975-9c62-2fea8187f349 9c81b12c5af98eb238beceb8acdea04c {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.WXS.Nbc C3L-05320 AML WXS buccal_normal CPT0339840004 CPT0339840004.WholeExome.RP-1303.bam 21914195628 BAM submitted_aligned CPTAC3 15fc319f-90b1-4c96-b3c1-6e44846396c1 97bf3bee017516f88f37d5c68aaa2f5f {"aliquot_tag": "ALQ_24e3c18c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05320.WXS.Nbc.hg38 C3L-05320 AML WXS buccal_normal CPT0339840004 68cf330a-fa16-4132-bf9b-1cc003a13282_wxs_gdc_realn.bam 29293490828 BAM harmonized CPTAC3 55f9d769-c711-4f7b-a3b6-33b16ff5734c 9605c0f93cf2d1607a7e333220df1ae0 {"aliquot_tag": "ALQ_24e3c18c", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05320.WXS.Tpb C3L-05320 AML WXS tumor_peripheral_blood CPT0339870002 CPT0339870002.WholeExome.RP-1303.bam 20813544788 BAM submitted_aligned CPTAC3 6387725b-3839-433f-bea9-1adcd9bed73d 51a7661e2cd7d07d6a12ee55a5cded88 {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05320.WXS.Tpb.hg38 C3L-05320 AML WXS tumor_peripheral_blood CPT0339870002 d63123be-df53-4296-b83a-11f2fa243e86_wxs_gdc_realn.bam 73123744822 BAM harmonized CPTAC3 af1fde5a-49a0-4607-ab3d-dce11cada86a c0c9be17a5b57e4ac018fa392957931a {"aliquot_tag": "ALQ_8a201e69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05325.MethArray.Green.Tbm C3L-05325 AML Methylation_Array tumor_bone_marrow CPT0302970002 204930640111_R08C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5cf9af22-03e3-4fb8-8f7e-f83971e90695 299454418fb5d64ae4ef4b7f5d8293d5 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.MethArray.Red.Tbm C3L-05325 AML Methylation_Array tumor_bone_marrow CPT0302970002 204930640111_R08C01_Red.idat 13677960 IDAT Red NA CPTAC3 bd7b2228-69e1-491e-b59d-1acf0b4248ac 0ee62af8ec2a15c812b129935c42e225 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.miRNA-Seq.S41_L008_R1.Tbm C3L-05325 AML miRNA-Seq tumor_bone_marrow CPT0302980002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACGAT_S41_L008_R1_001.unaln.bam 377230039 BAM S41_L008_R1 submitted_unaligned CPTAC3 be7638b7-7ed9-43d6-8939-a1652c4f9e51 1676e6698e3e8b2ea6f1170fc3afb701 {"aliquot_tag": "ALQ_4fa40904", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.miRNA-Seq.Tbm.hg38 C3L-05325 AML miRNA-Seq tumor_bone_marrow CPT0302980002 7b07132a-0048-4c84-9c14-23c2dbdc0143_mirnaseq_gdc_realn.bam 396617023 BAM harmonized CPTAC3 e49d89ef-1b71-4caa-b6d2-5819e356adf8 f70a7fa10c2575a65b356c1679eeb4d9 {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.RNA-Seq.chimeric.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.chimeric.gdc_realn.bam 145422441 BAM chimeric harmonized CPTAC3 3491ba24-b6f1-4310-ac5b-c9a790328d0c 4da728dbbd003f8e04a090840540cd52 {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.RNA-Seq.genomic.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.genomic.gdc_realn.bam 8082040900 BAM genomic harmonized CPTAC3 ea63d3fe-65d0-4dca-8e23-9c7c01fbc105 13700607219dceccc5ef0b5c28c9589a {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.RNA-Seq.S1_L001_R1.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3865706854 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 9e0e8b18-e220-45e2-baea-b937188f3285 b4a7550fd5c69b6f73ad4b30dbaaf3e6 {"aliquot_tag": "ALQ_4fa40904", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.RNA-Seq.S1_L001_R2.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4408396996 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 6c64aa9e-f5cc-4d55-bdad-8ba6f69a4075 680565e55297e4f206372163c52f9f50 {"aliquot_tag": "ALQ_4fa40904", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.RNA-Seq.transcriptome.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.transcriptome.gdc_realn.bam 10397615890 BAM transcriptome harmonized CPTAC3 721c187a-5d07-43a4-b081-187b7068b2cb 93dd17f524d57517bfe2b2ef6f605df4 {"aliquot_tag": "ALQ_4fa40904", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.WGS.Nbc C3L-05325 AML WGS buccal_normal CPT0303090001 CPT0303090001.WholeGenome.RP-2158.bam 56590884436 BAM submitted_aligned CPTAC3 4e767e17-6e45-40f8-8f28-e7529b80f106 a3cd9d2478f141a954824a0cc57997e3 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05325.WGS.Nbc.hg38 C3L-05325 AML WGS buccal_normal CPT0303090001 e19d601a-2cc0-4fa6-9087-b132aad1231c_wgs_gdc_realn.bam 165632305636 BAM harmonized CPTAC3 bd569d7a-2452-48fc-bb63-a7592fecb358 5e0c95a681d8c71b90df5b283ff951c2 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05325.WGS.Tbm C3L-05325 AML WGS tumor_bone_marrow CPT0302970002 CPT0302970002.WholeGenome.RP-2158.bam 54453345467 BAM submitted_aligned CPTAC3 b57e5e5a-06fb-4cdc-8c6b-6a89307b13f2 048a27b7bbb91003bf649f83b262e108 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.WGS.Tbm.hg38 C3L-05325 AML WGS tumor_bone_marrow CPT0302970002 4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wgs_gdc_realn.bam 161685499178 BAM harmonized CPTAC3 cc26201b-60ab-42fe-b54b-01affbeb695b a15d2dab24df9c784c4335d04accf98e {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.WXS.Nbc C3L-05325 AML WXS buccal_normal CPT0303090001 CPT0303090001.WholeExome.RP-1303.bam 26560098500 BAM submitted_aligned CPTAC3 72060486-aa88-46f1-8892-64a0335a49f4 f94cffdc7c758f62474068d9cc11fbd8 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05325.WXS.Nbc.hg38 C3L-05325 AML WXS buccal_normal CPT0303090001 e19d601a-2cc0-4fa6-9087-b132aad1231c_wxs_gdc_realn.bam 36111724180 BAM harmonized CPTAC3 508a3aa9-018b-4db7-9750-68ad57767d7b 272c22ad952fe4e8dc0549fc4467d716 {"aliquot_tag": "ALQ_6ab52b72", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05325.WXS.Tbm C3L-05325 AML WXS tumor_bone_marrow CPT0302970002 CPT0302970002.WholeExome.RP-1303.bam 20849146090 BAM submitted_aligned CPTAC3 0ece81db-6720-4b44-ac8f-e0dd68e02452 c93d10ce4805a61662d7f5d99acc5ae2 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05325.WXS.Tbm.hg38 C3L-05325 AML WXS tumor_bone_marrow CPT0302970002 4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wxs_gdc_realn.bam 29330023655 BAM harmonized CPTAC3 bbc8b9df-2e77-4e96-bedb-039e831f7cd6 8f0bfb3101280932bc854c4676c71839 {"aliquot_tag": "ALQ_cdf49ed5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05326.MethArray.Green.Tbm C3L-05326 AML Methylation_Array tumor_bone_marrow CPT0302760002 205555390174_R02C01_Grn.idat 13677965 IDAT Green NA CPTAC3 d3d39004-8ccf-47f1-a2eb-fb977097d8d5 4b97732149f247d943343eae7a6d374e {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.MethArray.Red.Tbm C3L-05326 AML Methylation_Array tumor_bone_marrow CPT0302760002 205555390174_R02C01_Red.idat 13677965 IDAT Red NA CPTAC3 fd96d0a7-6894-477a-8fdd-636ff8c40c1e 5b3edbedf8f76ae8c0e29abdc18b67c6 {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.miRNA-Seq.S39_L008_R1.Tbm C3L-05326 AML miRNA-Seq tumor_bone_marrow CPT0302770002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAACTA_S39_L008_R1_001.unaln.bam 358837826 BAM S39_L008_R1 submitted_unaligned CPTAC3 dac6b25e-7855-4833-867d-a88e51a33262 644d4201cd35494ef4a846265b22005d {"aliquot_tag": "ALQ_f7feffa5", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.miRNA-Seq.Tbm.hg38 C3L-05326 AML miRNA-Seq tumor_bone_marrow CPT0302770002 f2f9ec28-5d44-451e-ab6b-7cf3f85dd00b_mirnaseq_gdc_realn.bam 391075330 BAM harmonized CPTAC3 1f6c3cbd-2b30-4aad-ae05-e386b9f1d438 7ac78cb490800372dcd3a35c5ed27cc1 {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.RNA-Seq.chimeric.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.chimeric.gdc_realn.bam 134384296 BAM chimeric harmonized CPTAC3 5b6926b5-670c-4442-8492-7db6bc49e899 42b6acd643de8d2ae04df0d6971c790b {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.RNA-Seq.genomic.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.genomic.gdc_realn.bam 7897135026 BAM genomic harmonized CPTAC3 dfa72d70-310c-465d-aa9c-fa1e0aa05f9d 34d42ed146a43d618a668bb60ddb3bd0 {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.RNA-Seq.S4_L001_R1.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R1_001.fastq.gz 3880007997 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 f93b8cdc-388d-43ac-82ea-65102255812d 0f7a6cd08b639e7d54a6a049b3f975aa {"aliquot_tag": "ALQ_f7feffa5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.RNA-Seq.S4_L001_R2.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R2_001.fastq.gz 4354319919 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 2efc1bcc-69be-4919-a672-f15e499562a7 05a33e04d2d99d56839c12c406921d15 {"aliquot_tag": "ALQ_f7feffa5", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.RNA-Seq.transcriptome.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.transcriptome.gdc_realn.bam 7817736125 BAM transcriptome harmonized CPTAC3 ec99fa68-b94a-405c-889f-96bb439e4924 aa47717ba3186623bb203e41c5dddcbd {"aliquot_tag": "ALQ_f7feffa5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.WGS.Nbc C3L-05326 AML WGS buccal_normal CPT0302810001 CPT0302810001.WholeGenome.RP-2158.bam 50975153110 BAM submitted_aligned CPTAC3 b086b1da-a1b6-4fa8-8bc6-d3108e317114 a6fed2fd4ed877f385d2744ec91acb8c {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05326.WGS.Nbc.hg38 C3L-05326 AML WGS buccal_normal CPT0302810001 85125c43-2c59-4e3d-8314-cd25e40067d7_wgs_gdc_realn.bam 151390699487 BAM harmonized CPTAC3 5642b833-19b5-4ca9-86f9-5f2dccbe5689 ea517c1d52277084403518ab99b0b4cd {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05326.WGS.Tbm C3L-05326 AML WGS tumor_bone_marrow CPT0302760002 CPT0302760002.WholeGenome.RP-2158.bam 46492926205 BAM submitted_aligned CPTAC3 4d9c5f28-2169-458a-9d7d-250aea59ffe0 0b3497f8e0595600bd4324c5b7e096a8 {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.WGS.Tbm.hg38 C3L-05326 AML WGS tumor_bone_marrow CPT0302760002 b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wgs_gdc_realn.bam 131680411952 BAM harmonized CPTAC3 5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45 28beb11db9f9822675f50f7a195fc6dc {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.WXS.Nbc C3L-05326 AML WXS buccal_normal CPT0302810001 CPT0302810001.WholeExome.RP-1303.bam 33427677400 BAM submitted_aligned CPTAC3 a1744add-3d2c-461d-87ee-fd363bbc6948 dbbbf0ac5864fe65b06a26f21f625a94 {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05326.WXS.Nbc.hg38 C3L-05326 AML WXS buccal_normal CPT0302810001 85125c43-2c59-4e3d-8314-cd25e40067d7_wxs_gdc_realn.bam 45992366612 BAM harmonized CPTAC3 ec091100-2100-4d29-a873-296e36d7db86 e0e3c2edb2e2f8640fbde63aa56f24c8 {"aliquot_tag": "ALQ_10e1e96a", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05326.WXS.Tbm C3L-05326 AML WXS tumor_bone_marrow CPT0302760002 CPT0302760002.WholeExome.RP-1303.bam 28466118662 BAM submitted_aligned CPTAC3 c3f2f7b1-6385-4c4c-818b-cad5385a2ea4 16299cf5101fa7d7232d9066fde2bd6f {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05326.WXS.Tbm.hg38 C3L-05326 AML WXS tumor_bone_marrow CPT0302760002 b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wxs_gdc_realn.bam 39306222403 BAM harmonized CPTAC3 724a4f7d-86d8-4998-99c7-f5720004fd6a 172e3a1f8871d38a4dee8cfd376f9927 {"aliquot_tag": "ALQ_ca9ed615", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05329.MethArray.Green.Tbm C3L-05329 AML Methylation_Array tumor_bone_marrow CPT0302620002 205555390119_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 db0e6715-9a7f-40f9-beca-e2721c40bc98 469636ee3250c943a9cc25c61896b519 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.MethArray.Red.Tbm C3L-05329 AML Methylation_Array tumor_bone_marrow CPT0302620002 205555390119_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 e5f82d22-d8d4-409b-8e17-c55ccb7abfdf 78725551c0c68e6031dc3ba86886b2a8 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.miRNA-Seq.S4_L001_R1.Tbm C3L-05329 AML miRNA-Seq tumor_bone_marrow CPT0302630002 210702_UNC32-K00270_0289_AHKJ22BBXY_AGTTCC_S4_L001_R1_001.unaln.bam 335009017 BAM S4_L001_R1 submitted_unaligned CPTAC3 d4759a77-11fc-4d0f-bd4c-f51c095bb644 0cbcea1277da051d52d009dc3de16840 {"aliquot_tag": "ALQ_c9228ac0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.miRNA-Seq.Tbm.hg38 C3L-05329 AML miRNA-Seq tumor_bone_marrow CPT0302630002 a8ca982f-f202-4c3d-8870-c49b3226ba6a_mirnaseq_gdc_realn.bam 356328755 BAM harmonized CPTAC3 22491986-b918-4374-a438-934032dbe331 1a4275d850bc25b23aa485bc6e4ea6e0 {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.RNA-Seq.chimeric.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.chimeric.gdc_realn.bam 180387844 BAM chimeric harmonized CPTAC3 20756437-abef-4f99-8973-1184c914c96b fce9ffce0dc7cf72a623be8695bff5b8 {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.RNA-Seq.genomic.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.genomic.gdc_realn.bam 8182749938 BAM genomic harmonized CPTAC3 1117f318-f3cc-4378-8c69-6346a644dfb5 cad5734ae19b1ec1d243ea7553ebe0bc {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.RNA-Seq.S19_L005_R1.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R1_001.fastq.gz 4216058908 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 db8f255b-3efc-4c13-a464-c72591e7a005 a6ffc728498141c3301a48fae9491d3c {"aliquot_tag": "ALQ_c9228ac0", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.RNA-Seq.S19_L005_R2.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R2_001.fastq.gz 4399016864 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 5a5f7599-98e0-4f51-a77b-169bcfc351c8 10d7fd68ae44242b896febba46f6e0e2 {"aliquot_tag": "ALQ_c9228ac0", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.RNA-Seq.transcriptome.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.transcriptome.gdc_realn.bam 9941934063 BAM transcriptome harmonized CPTAC3 502329b9-a046-4b81-824d-e68a73cdf67d 05d91d9419722d336fa27519e5cbd04a {"aliquot_tag": "ALQ_c9228ac0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.WGS.Nbc C3L-05329 AML WGS buccal_normal CPT0302720002 CPT0302720002.WholeGenome.RP-2158.bam 51307611082 BAM submitted_aligned CPTAC3 619a2f7a-1015-4349-ad5a-ea2a8af952fb 0a54442772942d9e71830830ef0b7ba4 {"aliquot_tag": "ALQ_3f1e70d5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05329.WGS.Nbc.hg38 C3L-05329 AML WGS buccal_normal CPT0302720002 b456bbdf-1c90-4adb-9e43-3e230e94ddfa_wgs_gdc_realn.bam 152193846711 BAM harmonized CPTAC3 791e3842-80c8-401d-a611-a5b5825f9ce7 0d32aa67b7d0dc80eb0866adffb45225 {"aliquot_tag": "ALQ_3f1e70d5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05329.WGS.Tbm C3L-05329 AML WGS tumor_bone_marrow CPT0302620002 CPT0302620002.WholeGenome.RP-2158.bam 74022828528 BAM submitted_aligned CPTAC3 dd445304-44c8-4444-8e7a-3d23b836cf7c ffcb89b5090b3793571609c0af9d6362 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.WGS.Tbm.hg38 C3L-05329 AML WGS tumor_bone_marrow CPT0302620002 23cb3fbd-58e0-498e-8b63-d02df69ca4f2_wgs_gdc_realn.bam 217750987783 BAM harmonized CPTAC3 2c76956b-1fb0-4fcf-af09-37466c893f73 c7357998a5b010e66bfe4f20417d56d8 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.WXS.Tbm C3L-05329 AML WXS tumor_bone_marrow CPT0302620002 CPT0302620002.WholeExome.RP-1303.bam 22179430814 BAM submitted_aligned CPTAC3 bade3fad-dca9-4dc2-87c0-8179fe0c7e15 0021fbba0f0e2c55d5d7593d49189a96 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05329.WXS.Tbm.hg38 C3L-05329 AML WXS tumor_bone_marrow CPT0302620002 23cb3fbd-58e0-498e-8b63-d02df69ca4f2_wxs_gdc_realn.bam 30741990622 BAM harmonized CPTAC3 6b9a11bc-b5d5-46bd-826e-fb1e47378114 696cede279c96a0f48ee9307270391c6 {"aliquot_tag": "ALQ_f442a370", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05331.MethArray.Green.Tbm C3L-05331 AML Methylation_Array tumor_bone_marrow CPT0303460002 204930640111_R07C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5146cc9c-4ff6-467e-9214-aac9730eaa0e 18d947c345b4ea3cad60425a6c911e8b {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.MethArray.Red.Tbm C3L-05331 AML Methylation_Array tumor_bone_marrow CPT0303460002 204930640111_R07C01_Red.idat 13677960 IDAT Red NA CPTAC3 10e4276c-770a-4f87-b56c-4c3ad70842b0 697f066628de94a242d4d3f262fcfc8b {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.miRNA-Seq.S44_L008_R1.Tbm C3L-05331 AML miRNA-Seq tumor_bone_marrow CPT0303470002 210331_UNC31-K00269_0297_AHKCFKBBXY_CATGGC_S44_L008_R1_001.unaln.bam 176377459 BAM S44_L008_R1 submitted_unaligned CPTAC3 123c07a7-8e86-43c7-8a6b-68f78c1f7a15 7e3307375f7c13c2de43ffc54380b8e2 {"aliquot_tag": "ALQ_d71d86bf", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.miRNA-Seq.Tbm.hg38 C3L-05331 AML miRNA-Seq tumor_bone_marrow CPT0303470002 22b670d6-77df-4f60-b429-680a99bf4590_mirnaseq_gdc_realn.bam 190025838 BAM harmonized CPTAC3 9e8d744c-0fd6-43d5-96b7-2c4088e47e6b c715b91834e5647ba2ccaa2c0cceb913 {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.RNA-Seq.chimeric.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.chimeric.gdc_realn.bam 55266239 BAM chimeric harmonized CPTAC3 aa28150b-2d25-4c69-828e-907cfabba5f0 37e8fe4df93c8fd1c47f2b5266c94b81 {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.RNA-Seq.genomic.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.genomic.gdc_realn.bam 7357034413 BAM genomic harmonized CPTAC3 0b337f5d-e93d-4827-ab3c-deca03f2b5f5 a01790b56aa88f150956037e45cf017e {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.RNA-Seq.S31_L008_R1.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R1_001.fastq.gz 3742653458 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 b151c6c4-6506-49eb-8799-962f84a085d2 5784df326ca2bd7819b998d69ec18561 {"aliquot_tag": "ALQ_d71d86bf", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.RNA-Seq.S31_L008_R2.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R2_001.fastq.gz 3998407281 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 f1081644-0d91-4026-91cd-bacd5ff76d52 0c1f85d0a410860406580ff6da184dfb {"aliquot_tag": "ALQ_d71d86bf", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.RNA-Seq.transcriptome.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.transcriptome.gdc_realn.bam 9245018214 BAM transcriptome harmonized CPTAC3 8c5903c2-9c19-4e28-8d25-8b7d037d9c06 bd0f97b1e181484fe8fdbae0c1a25477 {"aliquot_tag": "ALQ_d71d86bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.WGS.Nbc C3L-05331 AML WGS buccal_normal CPT0303580001 CPT0303580001.WholeGenome.RP-2158.bam 60840274168 BAM submitted_aligned CPTAC3 5aaf07f3-3cc2-496a-992d-1d0755da720c aa21eaa7f299f378f06a4a22f33935f8 {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05331.WGS.Nbc.hg38 C3L-05331 AML WGS buccal_normal CPT0303580001 bf80d543-ed68-4d80-b5a1-06a3b41c17db_wgs_gdc_realn.bam 183444998690 BAM harmonized CPTAC3 bbf8979f-080d-4a93-8c81-3b5b44a6a5db ccb739bfa83d9286323cad0d8bfd79f7 {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05331.WGS.Tbm C3L-05331 AML WGS tumor_bone_marrow CPT0303460002 CPT0303460002.WholeGenome.RP-2158.bam 46959933148 BAM submitted_aligned CPTAC3 6b03ed9a-dc88-4393-bd02-9f87b534d5c4 4743a587b6a7aa05eb7050158932825d {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.WGS.Tbm.hg38 C3L-05331 AML WGS tumor_bone_marrow CPT0303460002 2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wgs_gdc_realn.bam 131612383213 BAM harmonized CPTAC3 f1fae58f-9b1b-4025-a253-9dcb308f4beb 336a02c6fecfa783ad65883fecf08e4a {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.WXS.Nbc C3L-05331 AML WXS buccal_normal CPT0303580001 CPT0303580001.WholeExome.RP-1303.bam 29817732682 BAM submitted_aligned CPTAC3 fe873268-99eb-4920-96b0-c2b8875928ad ba555135d49c0f54e0145dc2e7466f1a {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05331.WXS.Nbc.hg38 C3L-05331 AML WXS buccal_normal CPT0303580001 bf80d543-ed68-4d80-b5a1-06a3b41c17db_wxs_gdc_realn.bam 40929110588 BAM harmonized CPTAC3 9bfc5703-1f12-4a0e-9ae7-17b7cf0ed5f9 516d8ffbb1c3890ec4f5f29e752f92f5 {"aliquot_tag": "ALQ_7189371", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05331.WXS.Tbm C3L-05331 AML WXS tumor_bone_marrow CPT0303460002 CPT0303460002.WholeExome.RP-1303.bam 23804648889 BAM submitted_aligned CPTAC3 2ab9c7e6-1a1a-4825-9afe-5818779ccbaf 9cb43ebc03684ebca1fbfb37ad854e5a {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05331.WXS.Tbm.hg38 C3L-05331 AML WXS tumor_bone_marrow CPT0303460002 2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wxs_gdc_realn.bam 32693574088 BAM harmonized CPTAC3 786fd7da-f580-43f2-bb37-652f552c3bcd 5205f5ea78784ba85598d01ba19ba777 {"aliquot_tag": "ALQ_ea7daf0f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05334.MethArray.Green.Tbm C3L-05334 AML Methylation_Array tumor_bone_marrow CPT0303320002 205555380130_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 43aec0ef-38d4-4838-9007-892430357bcd d9716e56e25f47bce5a4cb1dbce317f7 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.MethArray.Red.Tbm C3L-05334 AML Methylation_Array tumor_bone_marrow CPT0303320002 205555380130_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 943f790d-8690-4cd4-9648-ab3342f29306 d0e5f05322cbc8624e525f73e3ff7787 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.miRNA-Seq.S43_L008_R1.Tbm C3L-05334 AML miRNA-Seq tumor_bone_marrow CPT0303330002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAGGCG_S43_L008_R1_001.unaln.bam 238972897 BAM S43_L008_R1 submitted_unaligned CPTAC3 7e11e7ed-296b-4de7-a56a-5196ea3c96ce 0efd0162a19abdf8d090bd883a5b397d {"aliquot_tag": "ALQ_3f9810c7", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05334.miRNA-Seq.Tbm.hg38 C3L-05334 AML miRNA-Seq tumor_bone_marrow CPT0303330002 dd86d68b-0355-4799-9f80-db4ed0d59941_mirnaseq_gdc_realn.bam 264185351 BAM harmonized CPTAC3 6a8182c7-88c0-4c4b-a5ab-c3db45b6c398 f38c89005d987919c3f82f0e8c745129 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05334.RNA-Seq.chimeric.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.chimeric.gdc_realn.bam 71589182 BAM chimeric harmonized CPTAC3 44422a11-80ef-4c94-b5a5-cea91e4d449e fd23a39aa1c1faa899b585a2579e9936 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.RNA-Seq.genomic.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.genomic.gdc_realn.bam 7734283952 BAM genomic harmonized CPTAC3 46ced65f-cea5-45ca-a032-8a6d3f632e55 02f5352b4ff3c78781387512c6f5ea68 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.RNA-Seq.S29_L008_R1.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R1_001.fastq.gz 4020869371 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 e77c2a2d-dd02-46e6-a5d6-318bdb264914 a1d939e3935e75383fa7b31c4f0f37a9 {"aliquot_tag": "ALQ_3f9810c7", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05334.RNA-Seq.S29_L008_R2.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R2_001.fastq.gz 4279525035 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 06f9c2be-9c21-41f3-9144-768393c3a873 655c337c805de5a885223e13e786160e {"aliquot_tag": "ALQ_3f9810c7", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05334.RNA-Seq.transcriptome.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.transcriptome.gdc_realn.bam 9728189517 BAM transcriptome harmonized CPTAC3 405c65f2-bf2b-4e7f-bbb6-04d49a67af57 48102d0810e4b5fdf0b1f9875578cf20 {"aliquot_tag": "ALQ_3f9810c7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.WGS.Tbm C3L-05334 AML WGS tumor_bone_marrow CPT0303320002 CPT0303320002.WholeGenome.RP-2158.bam 58846336015 BAM submitted_aligned CPTAC3 328856bb-1531-4d62-a957-157e82b2f6eb da0e2394c6a29a2e7445c01d679a3de5 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.WGS.Tbm.hg38 C3L-05334 AML WGS tumor_bone_marrow CPT0303320002 268ad7f9-d206-4f81-bbb8-d5b3037e47ab_wgs_gdc_realn.bam 172800935254 BAM harmonized CPTAC3 eb11fee7-9838-43b4-92d1-2ff6a994bc31 d66db84022819da49506879cf7b55fed {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.WXS.Nbc C3L-05334 AML WXS buccal_normal CPT0303440002 CPT0303440002.WholeExome.RP-1303.bam 28980765151 BAM submitted_aligned CPTAC3 eae67e58-30a4-44d3-abfb-c4c674dd2814 4b85978475413d5e50de0628194c71e6 {"aliquot_tag": "ALQ_90bdfc6f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05334.WXS.Nbc.hg38 C3L-05334 AML WXS buccal_normal CPT0303440002 df04ff41-e680-4a50-97fd-8b9e27252db2_wxs_gdc_realn.bam 39418047601 BAM harmonized CPTAC3 8cdf797c-dc5c-42d2-b159-92f0946be87a f6ff470dffa3e6779a09378811bd5805 {"aliquot_tag": "ALQ_90bdfc6f", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05334.WXS.Tbm C3L-05334 AML WXS tumor_bone_marrow CPT0303320002 CPT0303320002.WholeExome.RP-1303.bam 22175708157 BAM submitted_aligned CPTAC3 17704711-ef4b-49a9-bcb3-b28221d8e131 345b3ff2d9beb2cf793988168729c9a4 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05334.WXS.Tbm.hg38 C3L-05334 AML WXS tumor_bone_marrow CPT0303320002 268ad7f9-d206-4f81-bbb8-d5b3037e47ab_wxs_gdc_realn.bam 30563419398 BAM harmonized CPTAC3 d8551d58-caba-4a44-9925-0553d5017411 79cf4d908a4abc8dc53382b57d1942c8 {"aliquot_tag": "ALQ_2f83977", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05335.MethArray.Green.Tbm C3L-05335 AML Methylation_Array tumor_bone_marrow CPT0303780002 205555390128_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 dd15fcdb-103a-4f2e-89db-d4283dc45139 ea056588256fa1143e67c52f12ffb811 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.MethArray.Red.Tbm C3L-05335 AML Methylation_Array tumor_bone_marrow CPT0303780002 205555390128_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 bab53b22-4265-4c95-89c9-6ee9be77d6eb b7abdcd44d6af92d56373e9b6b1a1a31 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.miRNA-Seq.S13_L001_R1.Tbm C3L-05335 AML miRNA-Seq tumor_bone_marrow CPT0303790002 210702_UNC32-K00270_0289_AHKJ22BBXY_GGCTAC_S13_L001_R1_001.unaln.bam 229137458 BAM S13_L001_R1 submitted_unaligned CPTAC3 9bf107d6-d030-476a-8f56-564cb1a6777d 9f4932ce84c6f6fc556b08b60d652900 {"aliquot_tag": "ALQ_eeb94a70", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.miRNA-Seq.Tbm.hg38 C3L-05335 AML miRNA-Seq tumor_bone_marrow CPT0303790002 7a641685-1d3c-4f37-8527-27441694f0af_mirnaseq_gdc_realn.bam 250325948 BAM harmonized CPTAC3 d0f1c09a-4472-4331-962c-bdbe3a7eb5a9 750e4b67eb5c0dee2e17a68952033575 {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.RNA-Seq.chimeric.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.chimeric.gdc_realn.bam 230874766 BAM chimeric harmonized CPTAC3 cf2cd76d-01eb-4738-9f3b-abded1ac8c5f f148c4cbe7e318e188cd231392a3637e {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.RNA-Seq.genomic.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.genomic.gdc_realn.bam 7906694334 BAM genomic harmonized CPTAC3 f289acba-07c4-4be6-880b-f7eb2464d702 0bfc3a18af9ec6a127f85dade5ca9fed {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.RNA-Seq.S23_L006_R1.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R1_001.fastq.gz 4106093958 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 96bcd3c9-b405-404c-b043-9ae0e4398765 d80464d333e7378d47324f6b21f4e56f {"aliquot_tag": "ALQ_eeb94a70", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.RNA-Seq.S23_L006_R2.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R2_001.fastq.gz 4271226200 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 98a9da44-38a6-4705-9b02-f2332e487e40 e1d52986ae9e725b96138827044629d4 {"aliquot_tag": "ALQ_eeb94a70", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.RNA-Seq.transcriptome.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.transcriptome.gdc_realn.bam 9664894649 BAM transcriptome harmonized CPTAC3 659e41cc-b0f5-4255-aac7-e77548b2266d 53fa3b930d619c47a080b9b84ae99801 {"aliquot_tag": "ALQ_eeb94a70", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.WGS.Nbc C3L-05335 AML WGS buccal_normal CPT0303900001 CPT0303900001.WholeGenome.RP-2158.bam 54851118937 BAM submitted_aligned CPTAC3 8ed8edeb-499f-4b89-b167-f074d9b231e4 01aff9a6b1d8fcce5a612f7596f6dcdd {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05335.WGS.Nbc.hg38 C3L-05335 AML WGS buccal_normal CPT0303900001 db6412d0-5125-4730-baf5-786069bf9f6d_wgs_gdc_realn.bam 168491675145 BAM harmonized CPTAC3 76841f2b-4fd7-4071-b9d5-e5b573c876f0 98d8d412d04cde2d4972b6c7a018c547 {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05335.WGS.Tbm C3L-05335 AML WGS tumor_bone_marrow CPT0303780002 CPT0303780002.WholeGenome.RP-2158.bam 41712572364 BAM submitted_aligned CPTAC3 387ee555-d08e-4ebb-9497-5aec91e85a43 c1244bf228480d745b9e8f72d2c14288 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.WGS.Tbm.hg38 C3L-05335 AML WGS tumor_bone_marrow CPT0303780002 1c6e8c35-0a4b-478a-887d-d10356b940f3_wgs_gdc_realn.bam 121501420032 BAM harmonized CPTAC3 66e7a5d3-2eff-4840-ab1e-448203643be7 ccdc34aaf3bf071ed6172e590e2ff521 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.WXS.Nbc C3L-05335 AML WXS buccal_normal CPT0303900001 CPT0303900001.WholeExome.RP-1303.bam 20432195009 BAM submitted_aligned CPTAC3 2d46dd6f-614f-4a09-80cb-b29bda71dc7b 8323f528254bcd6a7db1421924c22d20 {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05335.WXS.Nbc.hg38 C3L-05335 AML WXS buccal_normal CPT0303900001 db6412d0-5125-4730-baf5-786069bf9f6d_wxs_gdc_realn.bam 28397070021 BAM harmonized CPTAC3 2b5cbbfe-66f9-45c1-9dea-02ae84d36b3a d78b142fb6a3e2bd83a732e3c36c3141 {"aliquot_tag": "ALQ_40aa18cb", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05335.WXS.Tbm C3L-05335 AML WXS tumor_bone_marrow CPT0303780002 CPT0303780002.WholeExome.RP-1303.bam 45934081947 BAM submitted_aligned CPTAC3 b1fa4aaa-8ce6-48eb-be0c-259e77ee93dc 990a6a9682272be1d0672c25776a4d33 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05335.WXS.Tbm.hg38 C3L-05335 AML WXS tumor_bone_marrow CPT0303780002 1c6e8c35-0a4b-478a-887d-d10356b940f3_wxs_gdc_realn.bam 63548466044 BAM harmonized CPTAC3 562149f9-5cac-4a4d-a8d5-d8d8276c5020 9994edba8a46c4f9007a1e4e75b0e780 {"aliquot_tag": "ALQ_d3d963c0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05338.MethArray.Green.Tbm C3L-05338 AML Methylation_Array tumor_bone_marrow CPT0303680002 205555390174_R05C01_Grn.idat 13677965 IDAT Green NA CPTAC3 c9f43c44-0797-4776-b190-7aec12ef607f 79910399513b1cb1d4196b4368495967 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.MethArray.Red.Tbm C3L-05338 AML Methylation_Array tumor_bone_marrow CPT0303680002 205555390174_R05C01_Red.idat 13677965 IDAT Red NA CPTAC3 e26c0dfe-aa17-4703-8c5f-e25ef4e52c2f f2a5b098d4677d7b587a2cb398966478 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.miRNA-Seq.S45_L008_R1.Tbm C3L-05338 AML miRNA-Seq tumor_bone_marrow CPT0303690002 210331_UNC31-K00269_0297_AHKCFKBBXY_CATTTT_S45_L008_R1_001.unaln.bam 291210175 BAM S45_L008_R1 submitted_unaligned CPTAC3 8c0459df-deeb-41cc-a209-e59e5dc4ef88 8ce5fc61dc550ccec46a4c07078ffdcf {"aliquot_tag": "ALQ_25e599d5", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.miRNA-Seq.Tbm.hg38 C3L-05338 AML miRNA-Seq tumor_bone_marrow CPT0303690002 0f78ff7c-3455-4ca5-a89a-174e41da2388_mirnaseq_gdc_realn.bam 310850103 BAM harmonized CPTAC3 17ee4ee3-d732-49e4-ae0f-7437eee98dbd 741480ef301e697129b87c164bccc2ff {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.RNA-Seq.chimeric.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.chimeric.gdc_realn.bam 62347550 BAM chimeric harmonized CPTAC3 09aae447-84ad-4549-b1aa-789dcb680a8d 6fa8ea064bf742b8a22fb28b6faf01e5 {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.RNA-Seq.genomic.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.genomic.gdc_realn.bam 6504887075 BAM genomic harmonized CPTAC3 db401667-fc70-4d5b-bd95-d92d3838753f 745d7d5646709090d9bd56475099258f {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.RNA-Seq.S30_L008_R1.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R1_001.fastq.gz 3333672847 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 8241771f-9643-4930-b2e7-9a475f409c7d 73d022874a6a788ced12a1e0faa80331 {"aliquot_tag": "ALQ_25e599d5", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.RNA-Seq.S30_L008_R2.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R2_001.fastq.gz 3541389231 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 2866a4a3-9138-4b5f-81f8-58f3e929f704 768d51e328c6d491640404960b72785a {"aliquot_tag": "ALQ_25e599d5", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.RNA-Seq.transcriptome.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.transcriptome.gdc_realn.bam 8850086914 BAM transcriptome harmonized CPTAC3 80640ec7-e9f6-48db-b6ba-b65048c7c118 b25be5984723f928082784f37a8e5fca {"aliquot_tag": "ALQ_25e599d5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.WGS.Nbc C3L-05338 AML WGS buccal_normal CPT0303760001 CPT0303760001.WholeGenome.RP-2158.bam 47293953932 BAM submitted_aligned CPTAC3 ed8376a6-4e91-4c12-8b53-3de7e43338bd 9176b3a47b5f7fe5553ba91e5cfe526c {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05338.WGS.Nbc.hg38 C3L-05338 AML WGS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wgs_gdc_realn.bam 145590528581 BAM harmonized CPTAC3 1e9e7855-cdb9-4b37-b3ae-44e9650f3c71 a6d1e10b730ca32fae544e95cefa501f {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05338.WGS.Tbm C3L-05338 AML WGS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeGenome.RP-2158.bam 64510996566 BAM submitted_aligned CPTAC3 9e3cf7b0-af37-4038-b126-07e7e1c7f387 f5171d4edc6e1d920279557ec36fafa1 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.WGS.Tbm.hg38 C3L-05338 AML WGS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wgs_gdc_realn.bam 180510531787 BAM harmonized CPTAC3 296b2dfb-9d7b-46c4-a848-4f96f19bb99b 52013aa9605cf9a93b55897bbad2c105 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.WXS.Nbc C3L-05338 AML WXS buccal_normal CPT0303760001 CPT0303760001.WholeExome.RP-1303.bam 29187740697 BAM submitted_aligned CPTAC3 26910fd8-ac41-4add-b4ae-1c1a2fd301b4 6d981e2b7e24bc27743506f2f5859573 {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05338.WXS.Nbc.hg38 C3L-05338 AML WXS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wxs_gdc_realn.bam 40043987846 BAM harmonized CPTAC3 1f8df55f-a261-4316-bb19-972442496f86 34820f7dfc28a42ac7e376c5d2c651ff {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05338.WXS.Tbm C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeExome.RP-1303.bam 30870352146 BAM submitted_aligned CPTAC3 8a102a76-2f4c-4ca6-a6af-1a4793b1dda9 01ce2357dc02c7e0742c1c07c5781597 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05338.WXS.Tbm.hg38 C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wxs_gdc_realn.bam 43084082849 BAM harmonized CPTAC3 0f344126-30a6-4718-bc90-4e1de755d276 2060dd6d4aec44e3ff2b8d5a20dfc58a {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05369.MethArray.Green.A C3L-05369 LSCC Methylation_Array tissue_normal CPT0294480006 204372030015_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 f5a79f0d-1a10-43d8-963c-685f261d9d66 b9796189bbec29d0836d54392b69c525 {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.MethArray.Green.T C3L-05369 LSCC Methylation_Array tumor CPT0294450006 204367470131_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fcfa9bd6-869d-4965-a42c-7ad6617544de 55e96f5e8a2f0470c1e1ffcd94f6243a {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.MethArray.Red.A C3L-05369 LSCC Methylation_Array tissue_normal CPT0294480006 204372030015_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 e2441776-a26a-483c-8d57-aebbd971647f 5896f469e52418e090c9bc7232d3c67b {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.MethArray.Red.T C3L-05369 LSCC Methylation_Array tumor CPT0294450006 204367470131_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 9ec5ad37-2dcb-497f-92e4-bb1cbf9dfc07 4d566258ad83d849a7b30ed7f882c294 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.miRNA-Seq.A.hg38 C3L-05369 LSCC miRNA-Seq tissue_normal CPT0294480009 a6045ff1-f560-4245-9d6a-6c33fac9c855_mirnaseq_gdc_realn.bam 332144186 BAM harmonized CPTAC3 b6b24ec4-5596-4143-8bfd-6f3a1e800ed0 f0e62c0691ef252cb0e48a5a14dfb235 {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.miRNA-Seq.S19_L001_R1.T C3L-05369 LSCC miRNA-Seq tumor CPT0294450009 200325_UNC31-K00269_0272_AHHC2NBBXY_TACAGC_S19_L001_R1_001.unaln.bam 214404384 BAM S19_L001_R1 submitted_unaligned CPTAC3 41f91b2e-603c-47dd-98a9-284aeffd84af 22c1f68524de7eea20da8408dd4e4e83 {"aliquot_tag": "ALQ_f79c3db1", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.miRNA-Seq.S37_L006_R1.A C3L-05369 LSCC miRNA-Seq tissue_normal CPT0294480009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGGAAT_S37_L006_R1_001.unaln.bam 298923371 BAM S37_L006_R1 submitted_unaligned CPTAC3 4fc9cbb0-1abc-43ba-85f7-c50da2f7fc16 1b8014bcbb16192bfbbe9346b6fa503d {"aliquot_tag": "ALQ_f0cf900", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.miRNA-Seq.T.hg38 C3L-05369 LSCC miRNA-Seq tumor CPT0294450009 cb095284-9f4b-4911-859b-68d96f6b1eeb_mirnaseq_gdc_realn.bam 236555962 BAM harmonized CPTAC3 32dc2d41-e5a9-4461-8a87-2d461d71b89e 5ee4a44672d96e7cc50b8c499c27e611 {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.RNA-Seq.chimeric.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.chimeric.gdc_realn.bam 33551406 BAM chimeric harmonized CPTAC3 2568ca61-658c-4394-9898-597d2b4efa7e 95ac5d4d8fd1f62822eb7b6d223ecd98 {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.RNA-Seq.chimeric.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.chimeric.gdc_realn.bam 80549148 BAM chimeric harmonized CPTAC3 1f162186-aad1-4479-a043-581f216d06a0 274dca470be3d61afc0d7a8625fba86b {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.RNA-Seq.genomic.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.genomic.gdc_realn.bam 8487117861 BAM genomic harmonized CPTAC3 1efc78c8-8f00-4f2d-a21b-b7492db45b81 3ee7191b7fd36828ee2245add426b4db {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.RNA-Seq.genomic.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.genomic.gdc_realn.bam 6905969106 BAM genomic harmonized CPTAC3 e9da3e64-9919-4836-b004-cde8ec413170 bd4c22edcf45b06bfdb23bc8d4699a53 {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.RNA-Seq.S24_L006_R1.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R1_001.fastq.gz 3843385000 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 23c565cb-ff39-4479-ba64-97c7208229d7 c326656ebb885bd7cf3e7a395ec4403c {"aliquot_tag": "ALQ_f0cf900", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.RNA-Seq.S24_L006_R2.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R2_001.fastq.gz 4754527121 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 9a8c552c-380a-4986-9f2d-f753e921b4fd 3d06eab17b5b4caab970444411d022c9 {"aliquot_tag": "ALQ_f0cf900", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.RNA-Seq.S27_L007_R1.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R1_001.fastq.gz 3566418089 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 ba9f0249-aaf6-4c46-8dc5-ec1a00ac7f7c db5b8aaa4e8591fdce377da5724599bb {"aliquot_tag": "ALQ_f79c3db1", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.RNA-Seq.S27_L007_R2.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R2_001.fastq.gz 3657828327 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 341a6501-69f2-414c-895f-a6f6b917dc1e 84dd6b96e268586e1f41adf6cfc1302d {"aliquot_tag": "ALQ_f79c3db1", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.RNA-Seq.transcriptome.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.transcriptome.gdc_realn.bam 9729688734 BAM transcriptome harmonized CPTAC3 fe3de7c4-a734-4e35-b40d-778ce6a4915c efdc49e62fee21d469f0b14f4bab658d {"aliquot_tag": "ALQ_f0cf900", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.RNA-Seq.transcriptome.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.transcriptome.gdc_realn.bam 10755963826 BAM transcriptome harmonized CPTAC3 ceef9de6-d251-4167-8d97-e5da653d304f d9a55edc4a7780b658c8e8a2c6616d2e {"aliquot_tag": "ALQ_f79c3db1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.WGS.N C3L-05369 LSCC WGS blood_normal CPT0294570002 CPT0294570002.WholeGenome.RP-2158.bam 24966812548 BAM submitted_aligned CPTAC3 d45011cb-cc8f-4973-bcb0-09c7332b85f5 af07abd4d3ad41b1582b3bdeeacdae3f {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05369.WGS.N.hg38 C3L-05369 LSCC WGS blood_normal CPT0294570002 60330a1e-b890-4080-b328-a426cc600b86_wgs_gdc_realn.bam 74854230798 BAM harmonized CPTAC3 fd313034-153a-492c-9e39-5991db231b8b 9f1fe9867e3b7d7a945c7896f757fc91 {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05369.WGS.T C3L-05369 LSCC WGS tumor CPT0294450006 CPT0294450006.WholeGenome.RP-2158.bam 26784354118 BAM submitted_aligned CPTAC3 293e5adf-8355-4331-9748-4fba8f0e393f 2d1d61d3933f123dd44333cf92567900 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.WGS.T.hg38 C3L-05369 LSCC WGS tumor CPT0294450006 d9f0103e-5df7-4f8e-a564-57886f38b001_wgs_gdc_realn.bam 76677003279 BAM harmonized CPTAC3 7a47cd4e-a586-4eb0-a8ce-65488b2b034e 82e0a2029667b28f5975d5f8a481301a {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.WXS.A C3L-05369 LSCC WXS tissue_normal CPT0294480006 CPT0294480006.WholeExome.RP-1303.bam 21216108412 BAM submitted_aligned CPTAC3 72a6bde7-9cd0-41c3-9afe-e03494e1b812 7b7813483f9d623753d32c139ed4107a {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.WXS.A.hg38 C3L-05369 LSCC WXS tissue_normal CPT0294480006 4352bbc1-4e58-4c52-9db5-93e0e8db5add_wxs_gdc_realn.bam 28923836668 BAM harmonized CPTAC3 08f19df2-9b4d-4766-a986-55dfc44c47a9 10c0b6fdb0fac9789645a4d8bbe8f2eb {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05369.WXS.N C3L-05369 LSCC WXS blood_normal CPT0294570002 CPT0294570002.WholeExome.RP-1303.bam 26241030335 BAM submitted_aligned CPTAC3 ba00f75e-adf8-4546-9997-f8ed0f657a0e 7e888b3b58e637f6dcf829e0fcec2172 {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05369.WXS.N.hg38 C3L-05369 LSCC WXS blood_normal CPT0294570002 60330a1e-b890-4080-b328-a426cc600b86_wxs_gdc_realn.bam 35671941984 BAM harmonized CPTAC3 b8139e05-7f50-4251-bfe1-aeb22fa0d2df 0e32daece3e33902ec27ef47f133f22c {"aliquot_tag": "ALQ_d1d264fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05369.WXS.T C3L-05369 LSCC WXS tumor CPT0294450006 CPT0294450006.WholeExome.RP-1303.bam 24727318124 BAM submitted_aligned CPTAC3 ca9120ab-aa99-497f-b095-0d2a4f95437f e9571f202624f830b3d2b125900370d8 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05369.WXS.T.hg38 C3L-05369 LSCC WXS tumor CPT0294450006 d9f0103e-5df7-4f8e-a564-57886f38b001_wxs_gdc_realn.bam 33845396068 BAM harmonized CPTAC3 43c332c1-41fb-4c23-b161-1bde175ded3c 7d6d6c83c57f5eeb88f774c157758b70 {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05386.MethArray.Green.Tpb C3L-05386 AML Methylation_Array tumor_peripheral_blood CPT0262620001 203561450103_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5d69043c-99e9-433a-a3c6-8bccdcf8a503 b33db5ccacbb024f170c5cbc51bfbb48 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.MethArray.Red.Tpb C3L-05386 AML Methylation_Array tumor_peripheral_blood CPT0262620001 203561450103_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 38f1717f-f595-4d1c-856f-eaa6532f7622 e5574fc078a89f35b35b547f3c346849 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.miRNA-Seq.S160_L008_R1.Tpb C3L-05386 AML miRNA-Seq tumor_peripheral_blood CPT0262630002 190828_UNC32-K00270_0200_BH7GVJBBXY_GGTAGC_S160_L008_R1_001.unaln.bam 274447132 BAM S160_L008_R1 submitted_unaligned CPTAC3 b75c03df-2a12-458c-b3a1-a9fcb07de56e 379534782e627705dff6c925ced91a55 {"aliquot_tag": "ALQ_18369704", "sample": "S160", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.miRNA-Seq.Tpb.hg38 C3L-05386 AML miRNA-Seq tumor_peripheral_blood CPT0262630002 1ef3e45a-f94b-4c35-b97d-cbbc08012367_mirnaseq_gdc_realn.bam 313355596 BAM harmonized CPTAC3 efd74a9f-87e4-4569-b4b9-3bf2921240f1 ae6636fa19fcd514b040c5016fbd6879 {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.RNA-Seq.chimeric.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.chimeric.gdc_realn.bam 41570907 BAM chimeric harmonized CPTAC3 d1573cd6-9391-4a78-bbbd-ba6d9eb76f51 65d559e9df46f2707c889d0f5066d1c8 {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.RNA-Seq.genomic.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.genomic.gdc_realn.bam 9520170101 BAM genomic harmonized CPTAC3 2e67e9b9-8e6f-412b-b912-7b4f5095868a 82e3c409992b37fe39d5db5cdd3023ec {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.RNA-Seq.S10_L003_R1.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R1_001.fastq.gz 4831265670 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 4fdd7460-7eab-46d5-a864-87e57245fa68 d2113543cba56dcc6e5ceb14912248c6 {"aliquot_tag": "ALQ_18369704", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.RNA-Seq.S10_L003_R2.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R2_001.fastq.gz 5221498803 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 4f151513-bde8-4194-86ed-d3d9bd0b69a7 d106b7d3037c55e24f38c49c4747f0a5 {"aliquot_tag": "ALQ_18369704", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.RNA-Seq.transcriptome.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.transcriptome.gdc_realn.bam 11673242080 BAM transcriptome harmonized CPTAC3 799e31d8-454e-4f30-9fa2-c4d6ccdcb2d9 398091498cc5d9084136927ef6f9a5c8 {"aliquot_tag": "ALQ_18369704", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.WGS.Nbc C3L-05386 AML WGS buccal_normal CPT0262610002 CPT0262610002.WholeGenome.RP-1303.bam 84391701158 BAM submitted_aligned CPTAC3 9a9935b2-2d21-46df-a29e-354f9e5a4e4e 68927c84fda27b492fab08e23f48df09 {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05386.WGS.Nbc.hg38 C3L-05386 AML WGS buccal_normal CPT0262610002 9271ecfc-7bb8-4e93-9b7c-11c500666325_wgs_gdc_realn.bam 119448197945 BAM harmonized CPTAC3 53b93788-0e38-4cb9-b5f2-818b0488012e 357456ce4b1ad8a44ce699618034f57f {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05386.WGS.Tpb C3L-05386 AML WGS tumor_peripheral_blood CPT0262620001 CPT0262620001.WholeGenome.RP-1303.bam 72320206451 BAM submitted_aligned CPTAC3 6aed8445-69f8-4392-b669-b3e6e4612a41 ab8742fd65837386b7c3b1e561cdf057 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.WGS.Tpb.hg38 C3L-05386 AML WGS tumor_peripheral_blood CPT0262620001 e0497046-63a5-4b92-b60f-39b07deae642_wgs_gdc_realn.bam 105969611759 BAM harmonized CPTAC3 f47fe90d-7a83-4f95-9c44-0c4ebc39d6b3 50469d57305f26fbef1c3501159cb156 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.WXS.Nbc C3L-05386 AML WXS buccal_normal CPT0262610002 CPT0262610002.WholeExome.RP-1303.bam 23519142481 BAM submitted_aligned CPTAC3 e33084ce-62cb-49b3-8b58-f7a9dc5462b5 8eabb753a6b5b7de270e1c487b397d6f {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05386.WXS.Nbc.hg38 C3L-05386 AML WXS buccal_normal CPT0262610002 9271ecfc-7bb8-4e93-9b7c-11c500666325_wxs_gdc_realn.bam 32712126516 BAM harmonized CPTAC3 8236c897-0ac6-4158-b6b9-0335142cf267 7c9e2b7043775e44cf8a570c80a25118 {"aliquot_tag": "ALQ_62f6c464", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05386.WXS.Tpb C3L-05386 AML WXS tumor_peripheral_blood CPT0262620001 CPT0262620001.WholeExome.RP-1303.bam 17187190188 BAM submitted_aligned CPTAC3 09bb55a7-8481-4ca6-aa9d-996390f52107 0fba3b23d13ad92ee1b860b4be95b226 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05386.WXS.Tpb.hg38 C3L-05386 AML WXS tumor_peripheral_blood CPT0262620001 e0497046-63a5-4b92-b60f-39b07deae642_wxs_gdc_realn.bam 23352315586 BAM harmonized CPTAC3 ad4db99e-f314-4049-915d-d80b7d6920d8 86a5b3644ebd4442ec99702a900257c6 {"aliquot_tag": "ALQ_bc5fef0e", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.MethArray.Green.Tpb C3L-05387 AML Methylation_Array tumor_peripheral_blood CPT0275090002 205987780161_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b5378fff-0286-434a-bbdb-da7a0068a8b9 a0994637c2c1771d89624e01e7c6d73a {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.MethArray.Red.Tpb C3L-05387 AML Methylation_Array tumor_peripheral_blood CPT0275090002 205987780161_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 673879c4-58bf-41f1-8574-748bbb2471c4 2f86e063b100c1a9a8c6d987eb4bc458 {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.miRNA-Seq.S7_L001_R1.Tpb C3L-05387 AML miRNA-Seq tumor_peripheral_blood CPT0275130002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATTTT_S7_L001_R1_001.unaln.bam 298465319 BAM S7_L001_R1 submitted_unaligned CPTAC3 630d208b-adb4-413b-b6aa-48bf8905fd50 8d54c228acb7e7384491506ee7c57d14 {"aliquot_tag": "ALQ_c3e99ac", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.miRNA-Seq.Tpb.hg38 C3L-05387 AML miRNA-Seq tumor_peripheral_blood CPT0275130002 f430fc97-5bbf-4f9b-bb22-52c4f9475a3f_mirnaseq_gdc_realn.bam 327933147 BAM harmonized CPTAC3 1fae3b67-999d-4f85-bfb7-bfa8df502d2b ed726eddabf26c8983185487ab7d86fc {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.RNA-Seq.chimeric.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.chimeric.gdc_realn.bam 666833248 BAM chimeric harmonized CPTAC3 71bdd64d-a6c7-497c-8e4f-1431b9464aec 58b86e905eadba8bef4a56ccce911d33 {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.RNA-Seq.genomic.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.genomic.gdc_realn.bam 7347126367 BAM genomic harmonized CPTAC3 033b5afb-eefb-4b11-9216-72c518bd67a7 64a8649968a60d190236b5b1fb3fce86 {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.RNA-Seq.S13_L004_R1.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R1_001.fastq.gz 3552138579 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 9079bc71-b14d-4ae8-9ce3-023aa2f2ff11 c916de42ba83f6ac84d5296c6c359477 {"aliquot_tag": "ALQ_c3e99ac", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.RNA-Seq.S13_L004_R2.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R2_001.fastq.gz 3882337040 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 68a5d6f0-e119-426f-a564-b94fbf5ceb59 8e499c9d5396b1028a0e885e9c2dbd93 {"aliquot_tag": "ALQ_c3e99ac", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.RNA-Seq.transcriptome.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.transcriptome.gdc_realn.bam 7952250491 BAM transcriptome harmonized CPTAC3 04ebdc8c-fe7b-47d0-9c92-0e63668abf87 7986ace27d63fe7ec0ec21da60e4a2e3 {"aliquot_tag": "ALQ_c3e99ac", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.WGS.Nbc C3L-05387 AML WGS buccal_normal CPT0275080001 CPT0275080001.WholeGenome.RP-2158.bam 44651253231 BAM submitted_aligned CPTAC3 fecf52b4-a3f7-4e11-a384-4f52325fddbe 9a688cb88f8e0546442d2c05963931a6 {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05387.WGS.Nbc.hg38 C3L-05387 AML WGS buccal_normal CPT0275080001 34b3bbed-c713-4a6b-ab3d-e3b04d33c731_wgs_gdc_realn.bam 400133768733 BAM harmonized CPTAC3 4ddeb513-59b0-4e4b-b1e5-61cf1f7fb6fe e178dddbb0ed1d50a3c681a36146538a {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05387.WGS.Tpb C3L-05387 AML WGS tumor_peripheral_blood CPT0275090002 CPT0275090002.WholeGenome.RP-2158.bam 52291271279 BAM submitted_aligned CPTAC3 10ea385c-66dc-47d9-b3b3-886561f2e207 72d83a89882ef2f7e6aa34aac53be4e6 {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.WGS.Tpb.hg38 C3L-05387 AML WGS tumor_peripheral_blood CPT0275090002 431ccf9c-42b9-480a-9aac-0cbfb7536a3a_wgs_gdc_realn.bam 154942526484 BAM harmonized CPTAC3 0520ac98-e70b-4ed0-a3cb-d9ffc1552369 799b80de89174cc54adf0bd4cb0ad0ed {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05387.WXS.Nbc C3L-05387 AML WXS buccal_normal CPT0275080001 CPT0275080001.WholeExome.RP-1303.bam 26721993786 BAM submitted_aligned CPTAC3 11f96ebf-4962-4f6b-80cd-f94737ca1a3d 230919e73081c24e5d14c1d0d42c8df4 {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05387.WXS.Nbc.hg38 C3L-05387 AML WXS buccal_normal CPT0275080001 34b3bbed-c713-4a6b-ab3d-e3b04d33c731_wxs_gdc_realn.bam 37711680308 BAM harmonized CPTAC3 244bf8e7-c556-45ac-89b8-7f2fb94e2ea6 c48614437228e54b3a12b4ef0644d019 {"aliquot_tag": "ALQ_29bb2aa2", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05387.WXS.Tpb C3L-05387 AML WXS tumor_peripheral_blood CPT0275090002 CPT0275090002.WholeExome.RP-1303.bam 25699517261 BAM submitted_aligned CPTAC3 1c2d05f4-e728-4df5-9a5b-cf0632b50408 8e8d7e8c8015a62e643b1da3e82fe8bd {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05387.WXS.Tpb.hg38 C3L-05387 AML WXS tumor_peripheral_blood CPT0275090002 431ccf9c-42b9-480a-9aac-0cbfb7536a3a_wxs_gdc_realn.bam 35598798050 BAM harmonized CPTAC3 59889aba-57ce-481c-846c-47ca04ea6ece a7d5f9c8bf69f72707c2f9a0615c5347 {"aliquot_tag": "ALQ_8dd252a8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05392.MethArray.Green.A C3L-05392 LSCC Methylation_Array tissue_normal CPT0291650006 204367490043_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e4943865-2992-4bfe-abe3-be20b504eaa6 f82af29769c1038a54d0a36cc9dc1711 {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.MethArray.Green.T C3L-05392 LSCC Methylation_Array tumor CPT0291630006 204367490093_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6d9b4672-c645-4974-a855-c20304dfe680 04fe15ea35640dc82d8dafeaca6715c6 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.MethArray.Red.A C3L-05392 LSCC Methylation_Array tissue_normal CPT0291650006 204367490043_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 b2c69dca-9b74-41ab-9278-da57c9db35ae e2d663a9a85f6ea6e0b4180e23118ca7 {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.MethArray.Red.T C3L-05392 LSCC Methylation_Array tumor CPT0291630006 204367490093_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 df4bac2f-67e7-4eda-8fdd-b489b0a22be6 20a2c24c3d5ba6fe50e5024b68d714d3 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.miRNA-Seq.A.hg38 C3L-05392 LSCC miRNA-Seq tissue_normal CPT0291650009 6b65d0b5-e056-4859-812b-4e7633bc7209_mirnaseq_gdc_realn.bam 197979085 BAM harmonized CPTAC3 edbdaca7-16fc-4954-84a1-b2a2feae2803 a5c639033b6d8a939f63ed58f6b9c155 {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.miRNA-Seq.S33_L006_R1.A C3L-05392 LSCC miRNA-Seq tissue_normal CPT0291650009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAGGCG_S33_L006_R1_001.unaln.bam 175455034 BAM S33_L006_R1 submitted_unaligned CPTAC3 be6d8666-d594-42b9-8543-e05ab2312ece 6ca50302dc2d060332b5a4e5ff0b1bf4 {"aliquot_tag": "ALQ_e86cb31d", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.miRNA-Seq.S4_L001_R1.T C3L-05392 LSCC miRNA-Seq tumor CPT0291630009 200325_UNC31-K00269_0272_AHHC2NBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 198358022 BAM S4_L001_R1 submitted_unaligned CPTAC3 ecde02aa-9c6c-4174-b417-48c67d74e720 7cbeb32b4d5f32cfdc48f0e2bd1024b4 {"aliquot_tag": "ALQ_672c46bd", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.miRNA-Seq.T.hg38 C3L-05392 LSCC miRNA-Seq tumor CPT0291630009 5df162d1-cfe4-401b-8b2d-9c1400d6b387_mirnaseq_gdc_realn.bam 222906673 BAM harmonized CPTAC3 7ccbc0dc-368f-42d6-bbba-8adb04ff5e12 3b0510a29338ee3419b0e4eeeaa4b25d {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.RNA-Seq.chimeric.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.chimeric.gdc_realn.bam 33477624 BAM chimeric harmonized CPTAC3 6fbe9d35-318f-4a60-b621-37ec63b82f25 3c9ac688fc3c5b675f274da8882da687 {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.RNA-Seq.chimeric.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.chimeric.gdc_realn.bam 127724772 BAM chimeric harmonized CPTAC3 7bf8ed8c-75cc-457d-aa59-8553000f2572 8883b3e414cea46b4ec4657c09632c00 {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.RNA-Seq.genomic.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.genomic.gdc_realn.bam 8863756412 BAM genomic harmonized CPTAC3 6b73e767-a5fe-4fd7-9b9e-993f5fc0c111 94a36cda743f81ad49c0bfd7ff21fe80 {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.RNA-Seq.genomic.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.genomic.gdc_realn.bam 8133192376 BAM genomic harmonized CPTAC3 97e3b87f-7a4b-47bf-9d84-313908c7ed07 c56ff3edcfc10cae0da365e70c05b5e8 {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.RNA-Seq.S12_L003_R1.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R1_001.fastq.gz 4109366063 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 a09393b8-579c-4c23-aaf9-0601c79d9bca d6456fd8df3cd39b593e4e5dab0aa77c {"aliquot_tag": "ALQ_672c46bd", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.RNA-Seq.S12_L003_R2.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R2_001.fastq.gz 4321086964 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 1c3d507a-a999-446e-a60c-f1d0861764ee 47fbe7de7ecf697f6ad76056d2c6a565 {"aliquot_tag": "ALQ_672c46bd", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.RNA-Seq.S20_L005_R1.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R1_001.fastq.gz 3855943575 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 359e3754-8a38-4bb2-ab30-f45104721810 de0695cc9f97993699daf35d522085a1 {"aliquot_tag": "ALQ_e86cb31d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.RNA-Seq.S20_L005_R2.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R2_001.fastq.gz 4857414271 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 dca97796-2c4c-4d14-8074-a9614c031baf d3d6c7efd1f417555f754850af3ea80f {"aliquot_tag": "ALQ_e86cb31d", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.RNA-Seq.transcriptome.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.transcriptome.gdc_realn.bam 9527933149 BAM transcriptome harmonized CPTAC3 9af6af3a-534d-40d7-986a-63138f48b7c5 3e967ad65ee676f330ab353ae869a1ea {"aliquot_tag": "ALQ_e86cb31d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.RNA-Seq.transcriptome.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.transcriptome.gdc_realn.bam 11449562732 BAM transcriptome harmonized CPTAC3 9607041b-7403-4427-a7c9-c23d8dbd9521 d1146f4281db94d5fd8a4192c1e28a8c {"aliquot_tag": "ALQ_672c46bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.WGS.N C3L-05392 LSCC WGS blood_normal CPT0291760002 CPT0291760002.WholeGenome.RP-2158.bam 24914133422 BAM submitted_aligned CPTAC3 d83e9394-8f7d-4a75-a2ab-15aa2988911c e6cf8a01411897fbe046ea58c57128d4 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05392.WGS.N.hg38 C3L-05392 LSCC WGS blood_normal CPT0291760002 74d7b8bf-5f4b-4e3e-841e-5d59c2afba8a_wgs_gdc_realn.bam 73845649668 BAM harmonized CPTAC3 1b5199ab-2746-4ae7-ba6a-aacdf07a0429 e0364f88436f2896171333cf650d34b1 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05392.WGS.T C3L-05392 LSCC WGS tumor CPT0291630006 CPT0291630006.WholeGenome.RP-2158.bam 23806348550 BAM submitted_aligned CPTAC3 3b63f153-6139-448d-aef3-3834c5f9f27c cc3c4954a67be5a3b9211643ff7f5f23 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.WGS.T.hg38 C3L-05392 LSCC WGS tumor CPT0291630006 345fba5f-2345-40ab-9d42-ffd0a47db599_wgs_gdc_realn.bam 71296704798 BAM harmonized CPTAC3 309533ab-d9a0-45eb-af78-d80eca0bcd5f ccec747f641b5dd8b204caf275e2212a {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.WXS.A C3L-05392 LSCC WXS tissue_normal CPT0291650006 CPT0291650006.WholeExome.RP-1303.bam 25155561823 BAM submitted_aligned CPTAC3 6f53d7a2-54bd-4caf-9fd5-2ecb4fbdee15 ba50b4d25bf71300949d596103af541d {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.WXS.A.hg38 C3L-05392 LSCC WXS tissue_normal CPT0291650006 59bf91a0-a7cb-4884-acc3-7c26b889e42d_wxs_gdc_realn.bam 35255214698 BAM harmonized CPTAC3 80923066-a6a3-4778-978b-91dc1b323077 0f148cb933a0274b259017bde8436c2f {"aliquot_tag": "ALQ_78d3ae8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05392.WXS.N C3L-05392 LSCC WXS blood_normal CPT0291760002 CPT0291760002.WholeExome.RP-1303.bam 26780582386 BAM submitted_aligned CPTAC3 224a3baa-7897-43e0-8319-8853697dcf5f f02e52426903dd8474b19b58128ece08 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05392.WXS.N.hg38 C3L-05392 LSCC WXS blood_normal CPT0291760002 74d7b8bf-5f4b-4e3e-841e-5d59c2afba8a_wxs_gdc_realn.bam 36251474159 BAM harmonized CPTAC3 3c1747f9-b395-4f57-9c6d-3fd731fa0c78 616ac09320dedf489ff484c0f2546e67 {"aliquot_tag": "ALQ_f342c3e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05392.WXS.T C3L-05392 LSCC WXS tumor CPT0291630006 CPT0291630006.WholeExome.RP-1303.bam 24036915098 BAM submitted_aligned CPTAC3 df4e4b90-f2c6-4fb8-8aa3-a404b6c15a87 84424b1924cb49b718245a9f9da69ced {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05392.WXS.T.hg38 C3L-05392 LSCC WXS tumor CPT0291630006 345fba5f-2345-40ab-9d42-ffd0a47db599_wxs_gdc_realn.bam 32466654641 BAM harmonized CPTAC3 55674770-033e-409b-8848-fab55bf0aefc e1fa30f20186bf332e56cbac0c749339 {"aliquot_tag": "ALQ_f7935b2c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.MethArray.Green.A C3L-05393 LSCC Methylation_Array tissue_normal CPT0290320006 204367490029_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1d32c09e-d59a-47f5-873f-0ea40dcbfc61 5e5ee64d072d0ffeb6ace2248cd6eb76 {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.MethArray.Green.T C3L-05393 LSCC Methylation_Array tumor CPT0290280006 204372030015_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 cc809b99-01c4-4ace-b7af-297a338eb2ae 6344d3aeb51046ae5f6042c3f7d8da95 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.MethArray.Red.A C3L-05393 LSCC Methylation_Array tissue_normal CPT0290320006 204367490029_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 75a7dbe6-12ee-4d3c-a4a2-8a30413e30ee bb59f2925686e4f846e0cd96763845fb {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.MethArray.Red.T C3L-05393 LSCC Methylation_Array tumor CPT0290280006 204372030015_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 05d068c9-a079-484f-bbfa-4f58f5dd38c2 6dde0520e389091a5dee473171d1fd63 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.miRNA-Seq.A.hg38 C3L-05393 LSCC miRNA-Seq tissue_normal CPT0290320009 fc22af7e-9c49-4ee2-baa1-a926f0df35f1_mirnaseq_gdc_realn.bam 324474160 BAM harmonized CPTAC3 1ea3360d-adba-441f-8e71-4a9c14c8ff79 4fe23e6af1fd82c63bb8c1765d6cb601 {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.miRNA-Seq.S1_L001_R1.T C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGAGC_S1_L001_R1_001.unaln.bam 143249433 BAM S1_L001_R1 submitted_unaligned CPTAC3 bf4ed63a-209e-4a22-8004-f80b0352815b bb5ca3eb0f19c1d6eaae6f6d1555ff2c {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.miRNA-Seq.S2_L001_R1.T C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 200325_UNC31-K00269_0272_AHHC2NBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 161582929 BAM S2_L001_R1 submitted_unaligned CPTAC3 6d56707f-1228-46cb-b2c7-5fac92d9b03f 7881c758956d5b763ea025dfdc28a444 {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.miRNA-Seq.S31_L006_R1.A C3L-05393 LSCC miRNA-Seq tissue_normal CPT0290320009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACGAT_S31_L006_R1_001.unaln.bam 292359300 BAM S31_L006_R1 submitted_unaligned CPTAC3 ee36f3a8-9d30-4382-91ee-8aa98c19cebf 73ca64516b58e619ad4e0931e32f071b {"aliquot_tag": "ALQ_acf6f50a", "sample": "S31", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.miRNA-Seq.T.hg38 C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 57e82e40-197a-4611-b409-0b2afd579a91_mirnaseq_gdc_realn.bam 349737022 BAM harmonized CPTAC3 a9f68953-7aaa-48cb-9a75-851fe1d915e8 d1c76db48a2e10afd1412d4117828767 {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.RNA-Seq.chimeric.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.chimeric.gdc_realn.bam 27717025 BAM chimeric harmonized CPTAC3 08de02fb-960b-44a9-bc0d-4671900594e8 8a50c20945b0faf47f9ed01887971a09 {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.RNA-Seq.chimeric.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.chimeric.gdc_realn.bam 145218422 BAM chimeric harmonized CPTAC3 e60eddfc-9352-4ae6-a458-a0823273535f 238619d5a4a328762eddf17f6d82c29e {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.RNA-Seq.genomic.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.genomic.gdc_realn.bam 7707277080 BAM genomic harmonized CPTAC3 649b1426-5c10-405f-8733-9e66c9e75079 0d1f9c99759359b128180f495e58ae6a {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.RNA-Seq.genomic.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.genomic.gdc_realn.bam 7756700946 BAM genomic harmonized CPTAC3 dc3bc6e7-8f1c-4ee1-b3db-7aecd33d2430 4abd2a3f73a938e07f34ba1ef59d3efd {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.RNA-Seq.S10_L003_R1.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 3895478243 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 a556603a-5bd3-43db-9ebd-1699738d2b6c 90c979ada1fdb13a1e121916aacbad92 {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.RNA-Seq.S10_L003_R2.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4153209470 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 fb564896-7d1f-494d-bb2d-da4dd09dd1f5 481358563068846e80179000115539d5 {"aliquot_tag": "ALQ_2d1a3e0e", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.RNA-Seq.S15_L004_R1.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3453640744 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 b4c58689-6157-4915-a5e8-e2d2016488ee 1f5960d4090eb4d76ca5a6a6058a60fd {"aliquot_tag": "ALQ_acf6f50a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.RNA-Seq.S15_L004_R2.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4119153049 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 bac04af1-f7b1-4e50-a673-3aa24bd26922 9288a6253e1d11d502b0457c08dd6cda {"aliquot_tag": "ALQ_acf6f50a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.RNA-Seq.transcriptome.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.transcriptome.gdc_realn.bam 9074869649 BAM transcriptome harmonized CPTAC3 5066acaa-df8e-4071-925f-3404bd601ef3 15803f0713fbf6bb3b713f3be877a92a {"aliquot_tag": "ALQ_acf6f50a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.RNA-Seq.transcriptome.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.transcriptome.gdc_realn.bam 12754030184 BAM transcriptome harmonized CPTAC3 245fac10-5e3e-426d-8ebe-a7c7d8394d11 a33c5d015a0afa6fd979e750298940fe {"aliquot_tag": "ALQ_2d1a3e0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.WGS.N C3L-05393 LSCC WGS blood_normal CPT0291290002 CPT0291290002.WholeGenome.RP-2158.bam 36053093360 BAM submitted_aligned CPTAC3 62bf051a-4479-441c-8a19-c39bfc635713 9422a363b0424cab8eeeeed9473c3b52 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05393.WGS.N C3L-05393 LSCC WGS blood_normal CPT0291290002 CPT0291290002.WholeGenome.RP-2158.bam 36111111145 BAM submitted_aligned CPTAC3 70d39eb6-7162-4cb4-b839-0ccadfa3b5f8 12e26ba310b2e5108423e7d8c6e053b8 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-05393.WGS.N.hg38 C3L-05393 LSCC WGS blood_normal CPT0291290002 7269aee9-f189-4c9a-b48d-1425ee35e613_wgs_gdc_realn.bam 108828980923 BAM harmonized CPTAC3 59b8c0b8-7499-4bd3-b267-17d81f32b6b5 fe31974536faf612d2254283c0940c83 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05393.WGS.T C3L-05393 LSCC WGS tumor CPT0290280006 CPT0290280006.WholeGenome.RP-2158.bam 25554045184 BAM submitted_aligned CPTAC3 77545a0a-f712-4f77-90f3-3e11dec9f6bd eb6fcccc15dd0406b50acd61be9818e7 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.WGS.T.hg38 C3L-05393 LSCC WGS tumor CPT0290280006 07739423-62a4-4b10-a9ce-de37a40ece88_wgs_gdc_realn.bam 75911524851 BAM harmonized CPTAC3 33ef5b1e-3163-41e2-b8f3-056172b5e654 13a6324db5995caed6d4db10fc68a5e7 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.WXS.A C3L-05393 LSCC WXS tissue_normal CPT0290320006 CPT0290320006.WholeExome.RP-1303.bam 27268091527 BAM submitted_aligned CPTAC3 4dab4f9c-7079-4b23-a877-b148ffdcdb7a cbea451992780be27aee421e67a74c0d {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.WXS.A.hg38 C3L-05393 LSCC WXS tissue_normal CPT0290320006 bb384eb8-cc46-4e94-8152-b849b04c9b37_wxs_gdc_realn.bam 37962473629 BAM harmonized CPTAC3 442e63b4-800d-4056-8347-21a65bb693d4 e1296634471853385df6bba231d84355 {"aliquot_tag": "ALQ_3c49e89b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05393.WXS.N C3L-05393 LSCC WXS blood_normal CPT0291290002 CPT0291290002.WholeExome.RP-1303.bam 25291640186 BAM submitted_aligned CPTAC3 203b0362-1004-4bc8-8c1c-9ccca51ec425 4375cc2bede9fa54d2277c4bf6dc81bb {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05393.WXS.N.hg38 C3L-05393 LSCC WXS blood_normal CPT0291290002 7269aee9-f189-4c9a-b48d-1425ee35e613_wxs_gdc_realn.bam 33817222088 BAM harmonized CPTAC3 03b2b28f-19f2-4d74-87aa-1051a41b3128 41f09858a3940feabb8af99e3d7e1405 {"aliquot_tag": "ALQ_21dfc582", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05393.WXS.T C3L-05393 LSCC WXS tumor CPT0290280006 CPT0290280006.WholeExome.RP-1303.bam 22510925701 BAM submitted_aligned CPTAC3 a9b6e06f-b1ad-414e-aa53-5de5b616ecaa ae68a7814f2d70cc4ca7d15930e92b97 {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05393.WXS.T.hg38 C3L-05393 LSCC WXS tumor CPT0290280006 07739423-62a4-4b10-a9ce-de37a40ece88_wxs_gdc_realn.bam 30931951846 BAM harmonized CPTAC3 6b5e6508-4d27-4b2f-8cf7-8c92bff08893 b7fa3512183f048fa623a9182d68046b {"aliquot_tag": "ALQ_bda5239f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.MethArray.Green.A C3L-05394 LSCC Methylation_Array tissue_normal CPT0291470006 204367490029_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6576020e-9743-410d-9045-a83813c3c900 a0505bd8963570c5ed424e6e4358d33a {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.MethArray.Green.T C3L-05394 LSCC Methylation_Array tumor CPT0291310006 204372030024_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 f16b31b2-9115-42d2-bada-9558d5e5f501 2bff90bf3cdb77cac0ba573e02546b68 {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.MethArray.Red.A C3L-05394 LSCC Methylation_Array tissue_normal CPT0291470006 204367490029_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 c5430109-4558-4e10-9908-185184863b37 72f675f6282dcef54f30fa94407f4099 {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.MethArray.Red.T C3L-05394 LSCC Methylation_Array tumor CPT0291310006 204372030024_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 18c77e2f-50fb-4e93-b9e5-b53ed82c8fe0 536f4339199ee1131ab4eb2b1cec7499 {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.miRNA-Seq.A.hg38 C3L-05394 LSCC miRNA-Seq tissue_normal CPT0291470009 541dd904-eb6e-46bd-8ac6-e81b5af2d5f9_mirnaseq_gdc_realn.bam 294014583 BAM harmonized CPTAC3 86b19e89-f3ee-43d2-8b4d-d0d69661792a b8334d7febc1ad966977c35f094b71bc {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.miRNA-Seq.S2_L001_R1.T C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L001_R1_001.unaln.bam 135528627 BAM S2_L001_R1 submitted_unaligned CPTAC3 417a9012-f772-4948-862e-49080422e1e8 82128a37050178dc0f95e709db56f313 {"aliquot_tag": "ALQ_4d21846e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.miRNA-Seq.S32_L006_R1.A C3L-05394 LSCC miRNA-Seq tissue_normal CPT0291470009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACTCA_S32_L006_R1_001.unaln.bam 261587417 BAM S32_L006_R1 submitted_unaligned CPTAC3 1289c18c-0ac7-4850-81d2-4826d65e9722 bc50f3f747242db0fd6d291e776909ed {"aliquot_tag": "ALQ_df644176", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.miRNA-Seq.S3_L001_R1.T C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 200325_UNC31-K00269_0272_AHHC2NBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 148926599 BAM S3_L001_R1 submitted_unaligned CPTAC3 f618b210-587b-494f-abb0-ea39465b3588 db5a87ef32e31828ff97169398ff734f {"aliquot_tag": "ALQ_4d21846e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.miRNA-Seq.T.hg38 C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 2fd0bfaa-fd4b-473f-a164-9dd929079073_mirnaseq_gdc_realn.bam 310104649 BAM harmonized CPTAC3 1af907cd-6f68-450e-b813-c792f9ba8072 208003eb232e7f52c3612f8ff9ade67e {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.RNA-Seq.chimeric.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.chimeric.gdc_realn.bam 34621438 BAM chimeric harmonized CPTAC3 ad93e862-8a5c-4e69-8786-76c807a843f1 c252d104fe38f559fdaee3728fb4ac1a {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.RNA-Seq.chimeric.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.chimeric.gdc_realn.bam 162021695 BAM chimeric harmonized CPTAC3 3ca03feb-a119-4aed-80f7-3046d7d40520 fa7ef33a54ce94b1973b692e7088710d {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.RNA-Seq.genomic.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.genomic.gdc_realn.bam 7982388630 BAM genomic harmonized CPTAC3 751f33b3-7972-482f-978d-59068f5ef6d1 b50c529c039478c13754bf5a6cec18b4 {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.RNA-Seq.genomic.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.genomic.gdc_realn.bam 7263056352 BAM genomic harmonized CPTAC3 34c369f4-fa4b-4476-90d4-c2218091cf99 9331cbc8c391a6586735e85505613fea {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.RNA-Seq.S11_L003_R1.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R1_001.fastq.gz 3692123957 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 0b944030-64c1-4363-96f5-9ea000c7e7d7 e2d4a046b0798b8f10849ca1fb53e48f {"aliquot_tag": "ALQ_4d21846e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.RNA-Seq.S11_L003_R2.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R2_001.fastq.gz 3889134637 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 8e103b76-ff3a-4295-9043-aeab73954d21 b74fd579b2b67dc9a7530493d8814f19 {"aliquot_tag": "ALQ_4d21846e", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.RNA-Seq.S13_L004_R1.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 3695094357 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 d45c61c9-dbeb-4b69-99f2-cb3fc507d2e4 82c743e6cdd2e02235ea4d60185d9834 {"aliquot_tag": "ALQ_df644176", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.RNA-Seq.S13_L004_R2.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4457552008 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 76e1c6df-9cd5-4ba2-857f-48fb3a3f24a3 b0ee10eb8cdbc8cfa719292784c5dced {"aliquot_tag": "ALQ_df644176", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.RNA-Seq.transcriptome.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.transcriptome.gdc_realn.bam 8837587110 BAM transcriptome harmonized CPTAC3 7e233b37-6b03-4954-9ffe-e3ea57cceeb1 fd4d09f96e1d7277b2d4c5feadd693f3 {"aliquot_tag": "ALQ_df644176", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.RNA-Seq.transcriptome.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.transcriptome.gdc_realn.bam 11531986091 BAM transcriptome harmonized CPTAC3 490a9d90-5f2d-4326-b0c3-2be3dcc85f45 58ad3a5b803e781465385806a6e0101d {"aliquot_tag": "ALQ_4d21846e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.WGS.N C3L-05394 LSCC WGS blood_normal CPT0291580002 CPT0291580002.WholeGenome.RP-2158.bam 29237077219 BAM submitted_aligned CPTAC3 e8168ade-b21c-4f25-944c-9ec9071fd3dc ea5a3be1f942e20cd514dfccb7c090f6 {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05394.WGS.N.hg38 C3L-05394 LSCC WGS blood_normal CPT0291580002 9b3dd1c0-f10d-41a8-8dfd-3a069eb847ce_wgs_gdc_realn.bam 86067227450 BAM harmonized CPTAC3 b5981ecb-e6bb-4c3b-aaf1-2cac92483bf8 34982803bf99f590821ac21a62c5e8ca {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05394.WGS.T C3L-05394 LSCC WGS tumor CPT0291310006 CPT0291310006.WholeGenome.RP-2158.bam 24070384674 BAM submitted_aligned CPTAC3 390b128b-7731-40b1-8234-7d768dd895b4 648e80223fb66ae733991c434050ee25 {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.WGS.T.hg38 C3L-05394 LSCC WGS tumor CPT0291310006 72bc503d-d1c6-443a-a983-db1eb773c3d6_wgs_gdc_realn.bam 68332351002 BAM harmonized CPTAC3 a02b7815-fd4e-4a5c-b42a-3d4e5bb59346 649dd1e47f9ce538248920f5a3f5797b {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.WXS.A C3L-05394 LSCC WXS tissue_normal CPT0291470006 CPT0291470006.WholeExome.RP-1303.bam 39540660403 BAM submitted_aligned CPTAC3 c732a001-9eb7-4e51-94e5-7b3bddb24755 c4cd7d908f91c3e9db15a84793888236 {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.WXS.A.hg38 C3L-05394 LSCC WXS tissue_normal CPT0291470006 36f8a33c-3112-4139-aa3a-9696db893b7d_wxs_gdc_realn.bam 55555954824 BAM harmonized CPTAC3 3accffef-4822-4ae2-803f-44abbe3f0a0f 4154c679536b543d2bb42c6793b657dd {"aliquot_tag": "ALQ_4fdb5ce7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05394.WXS.N C3L-05394 LSCC WXS blood_normal CPT0291580002 CPT0291580002.WholeExome.RP-1303.bam 30922185737 BAM submitted_aligned CPTAC3 9ed66654-d524-4de7-8881-2619947b9fbb b288857a41691f08df2f4e8fb52465f8 {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05394.WXS.N.hg38 C3L-05394 LSCC WXS blood_normal CPT0291580002 9b3dd1c0-f10d-41a8-8dfd-3a069eb847ce_wxs_gdc_realn.bam 41283848540 BAM harmonized CPTAC3 92279fdc-602b-4ca8-8b1a-349ca7d1c358 dec8a706b182666f1121041bf83e1648 {"aliquot_tag": "ALQ_1badc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05394.WXS.T C3L-05394 LSCC WXS tumor CPT0291310006 CPT0291310006.WholeExome.RP-1303.bam 19228086514 BAM submitted_aligned CPTAC3 bd129931-5108-4d8e-81fe-d28447171d9a 592d7de405b077b39e7ed2ceed92e7aa {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05394.WXS.T.hg38 C3L-05394 LSCC WXS tumor CPT0291310006 72bc503d-d1c6-443a-a983-db1eb773c3d6_wxs_gdc_realn.bam 25932983372 BAM harmonized CPTAC3 a3106845-5fda-4228-a746-2aeeab0af29e 40e52fc09514ea8cadfd3a5793b3b7ea {"aliquot_tag": "ALQ_dd9e99ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.MethArray.Green.A C3L-05397 LSCC Methylation_Array tissue_normal CPT0289970006 204372030139_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f71f8223-a362-42df-a4c2-d80ace5e7668 d25a333ec16e3011c6f99ec17428dd1e {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.MethArray.Green.T C3L-05397 LSCC Methylation_Array tumor CPT0289940006 204367470157_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 63932a75-8be8-466b-af35-3d1d58778559 425c3d65b6024876a61254ede9606815 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.MethArray.Red.A C3L-05397 LSCC Methylation_Array tissue_normal CPT0289970006 204372030139_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 d3c1b475-221a-42a1-9c64-affebaf397e2 89d2e54312c5dc600ed0a7be76727de6 {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.MethArray.Red.T C3L-05397 LSCC Methylation_Array tumor CPT0289940006 204367470157_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 e9ff38d3-2060-400c-9cf4-706d0c9f1567 282a4defbf9a4ebf689a6538a8ff0b67 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.miRNA-Seq.A.hg38 C3L-05397 LSCC miRNA-Seq tissue_normal CPT0289970009 63467abd-b13f-4657-8dbd-e6452e2c3325_mirnaseq_gdc_realn.bam 242562457 BAM harmonized CPTAC3 0f7a95ff-4115-4541-abba-309000996323 4edaed7b411bb9ce3b2b31ca6fa83061 {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.miRNA-Seq.S1_L001_R1.T C3L-05397 LSCC miRNA-Seq tumor CPT0289940009 200325_UNC31-K00269_0272_AHHC2NBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 233867305 BAM S1_L001_R1 submitted_unaligned CPTAC3 b3bffd97-e745-428d-9c86-692ec242a210 141052f6622cfaad53d6861fdf26c4c4 {"aliquot_tag": "ALQ_db1f6681", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.miRNA-Seq.S30_L006_R1.A C3L-05397 LSCC miRNA-Seq tissue_normal CPT0289970009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACCGG_S30_L006_R1_001.unaln.bam 215175819 BAM S30_L006_R1 submitted_unaligned CPTAC3 84d9c207-1aff-4a0c-9cda-8b61ae10c019 bfae984677c3cc89e9e523f8e9619906 {"aliquot_tag": "ALQ_9cbf1c51", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.miRNA-Seq.T.hg38 C3L-05397 LSCC miRNA-Seq tumor CPT0289940009 cd9281fd-a48e-4338-a0d1-2c1535d94336_mirnaseq_gdc_realn.bam 266074621 BAM harmonized CPTAC3 c8c8bad5-7f93-4e19-90b1-9e9c5f19b8d7 2a3d02393a0509af19333e32e5c02959 {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.RNA-Seq.chimeric.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.chimeric.gdc_realn.bam 36018240 BAM chimeric harmonized CPTAC3 31ca5539-9ccb-4baa-9bc7-dd6ab12ced25 a0aeded708540a30b82a15c234982d98 {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.RNA-Seq.chimeric.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.chimeric.gdc_realn.bam 85016384 BAM chimeric harmonized CPTAC3 c00a03d0-07ad-4baf-a7a1-84ff5ddad195 02136973892e658a3437c90c176df47c {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.RNA-Seq.genomic.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.genomic.gdc_realn.bam 9588176218 BAM genomic harmonized CPTAC3 1515d1e0-8907-4eac-90fc-c8a0ffddfabe af528be7a1936e95b87fb237449d207c {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.RNA-Seq.genomic.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.genomic.gdc_realn.bam 7755040002 BAM genomic harmonized CPTAC3 3a61442f-7d7e-40c5-bea0-9b849f02186d 6b8d4e9cf2070e148b5066590124c2ce {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.RNA-Seq.S16_L004_R1.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4417718201 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 1b529f0d-edb3-4bf6-8dfe-ca4a677128d0 445d2393e882fdcda66b6660938bfae6 {"aliquot_tag": "ALQ_9cbf1c51", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.RNA-Seq.S16_L004_R2.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 5301940546 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 22fa13f7-d267-4e8b-a38f-cf0bfcab2b04 dff1759f45b2a79721ca5abe6070e140 {"aliquot_tag": "ALQ_9cbf1c51", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.RNA-Seq.S9_L003_R1.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R1_001.fastq.gz 4063269281 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 bb6600c1-f592-415f-9155-f9960a85e71d c594ef69c71838a0d93d7f7541bc2be0 {"aliquot_tag": "ALQ_db1f6681", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.RNA-Seq.S9_L003_R2.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R2_001.fastq.gz 4215380053 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 c0b8ab1b-0380-4814-98bb-1f51e2cfefec f8fc95585f169192d886be7e58d158ec {"aliquot_tag": "ALQ_db1f6681", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.RNA-Seq.transcriptome.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.transcriptome.gdc_realn.bam 10803761445 BAM transcriptome harmonized CPTAC3 74777277-5316-4ecd-b257-66b4f1bf0907 bf7540a47077cf365e6644065ca24023 {"aliquot_tag": "ALQ_9cbf1c51", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.RNA-Seq.transcriptome.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.transcriptome.gdc_realn.bam 12064333549 BAM transcriptome harmonized CPTAC3 8c47cf5f-fa6b-40f2-9208-69ebaa100c77 046f971f7b6bb6b90909577c0a626909 {"aliquot_tag": "ALQ_db1f6681", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.WGS.N C3L-05397 LSCC WGS blood_normal CPT0290060002 CPT0290060002.WholeGenome.RP-2158.bam 20043165656 BAM submitted_aligned CPTAC3 ac8c750b-5805-4927-94cb-9cd7864b7135 cebd6e5bc8654b2d55339f3775950859 {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05397.WGS.N.hg38 C3L-05397 LSCC WGS blood_normal CPT0290060002 b722d6b5-e10d-4dc5-8cbf-4aacdcfbb671_wgs_gdc_realn.bam 58919124493 BAM harmonized CPTAC3 051ce0e0-be4e-4962-b5e0-6ec0e635ea84 4fd98483194ec3ea8eb44cc28f713ebe {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05397.WGS.T C3L-05397 LSCC WGS tumor CPT0289940006 CPT0289940006.WholeGenome.RP-2158.bam 28240835053 BAM submitted_aligned CPTAC3 0cf704f0-b7c4-46f9-be72-065803dea054 0981ba86a0a23ee4f11ca9f863c4492f {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.WGS.T.hg38 C3L-05397 LSCC WGS tumor CPT0289940006 4bf7649f-7956-4173-a0b0-ba1eff0a0d4c_wgs_gdc_realn.bam 83225735323 BAM harmonized CPTAC3 286bfa90-9947-4972-9dd2-f0a5fe7734b4 1be19d37bc00d3fee418430aef827cd7 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.WXS.A C3L-05397 LSCC WXS tissue_normal CPT0289970006 CPT0289970006.WholeExome.RP-1303.bam 19556400616 BAM submitted_aligned CPTAC3 1b91f3eb-52d9-4665-9125-c3d336dafeca 7b1a9f9a0082d0db89b96ba92c4edabd {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.WXS.A.hg38 C3L-05397 LSCC WXS tissue_normal CPT0289970006 ca1c6bd9-fbfa-4ff9-a241-ca09ac898bd6_wxs_gdc_realn.bam 27513991800 BAM harmonized CPTAC3 82ac660b-1fab-41c2-82ec-03c97db32b06 013ec3340b963452ad17910c69439990 {"aliquot_tag": "ALQ_c0001c0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05397.WXS.N C3L-05397 LSCC WXS blood_normal CPT0290060002 CPT0290060002.WholeExome.RP-1303.bam 27642083555 BAM submitted_aligned CPTAC3 9a220737-17e2-498c-bd75-5bd068e34e93 f87fea6518d63dfc3e8d0bef74690d82 {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05397.WXS.N.hg38 C3L-05397 LSCC WXS blood_normal CPT0290060002 b722d6b5-e10d-4dc5-8cbf-4aacdcfbb671_wxs_gdc_realn.bam 38012340972 BAM harmonized CPTAC3 de3d819d-a3b3-4532-bfe4-6a0ead74c54b 768b2474339ebc01a821a4beeee3902c {"aliquot_tag": "ALQ_4830f8ec", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05397.WXS.T C3L-05397 LSCC WXS tumor CPT0289940006 CPT0289940006.WholeExome.RP-1303.bam 29432979706 BAM submitted_aligned CPTAC3 4406282a-186e-4eee-a331-f7832bae201c 8b1ee5033c630bce61bbc167dbf562c3 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05397.WXS.T.hg38 C3L-05397 LSCC WXS tumor CPT0289940006 4bf7649f-7956-4173-a0b0-ba1eff0a0d4c_wxs_gdc_realn.bam 40412052226 BAM harmonized CPTAC3 7d42944c-4fff-45d5-9504-1bc295144084 a9b2910a8a9258dab5df853803aa1793 {"aliquot_tag": "ALQ_4ba07b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.MethArray.Green.A C3L-05398 LSCC Methylation_Array tissue_normal CPT0289780006 204367490066_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 034f4304-fec6-41f6-b60f-bf95dad7d897 55985aedfcdd2e3b512f62118e15e029 {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.MethArray.Green.T C3L-05398 LSCC Methylation_Array tumor CPT0289770006 204367490030_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c5ceeba2-7a7c-481a-aaea-8216263f55de bc86f66de2d89feee873ea9514bd6748 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.MethArray.Red.A C3L-05398 LSCC Methylation_Array tissue_normal CPT0289780006 204367490066_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 87157b6d-b6bb-46d8-bb94-f13b38a0213d adb38cd15ef721eb1045e867ffadc7fe {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.MethArray.Red.T C3L-05398 LSCC Methylation_Array tumor CPT0289770006 204367490030_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 12409130-5ff9-49a5-bf97-81e9a1018425 04462a33d38f290c23411b9e9a723894 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.miRNA-Seq.A.hg38 C3L-05398 LSCC miRNA-Seq tissue_normal CPT0289780009 c6ef0b24-64c9-4615-81e8-a721c058b08f_mirnaseq_gdc_realn.bam 282678508 BAM harmonized CPTAC3 08c31a82-d751-4ed7-aea7-0f2b152d4f54 5cd5aa956a18ae54c037cf2468dd2bc3 {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.miRNA-Seq.S24_L006_R1.T C3L-05398 LSCC miRNA-Seq tumor CPT0289770009 200224_UNC31-K00269_0267_AHC722BBXY_GGTAGC_S24_L006_R1_001.unaln.bam 209853782 BAM S24_L006_R1 submitted_unaligned CPTAC3 faf6655c-3b07-4a33-bb38-e2b65612e852 b5706589cc0e49275169b4189fc5c239 {"aliquot_tag": "ALQ_a6b57d21", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.miRNA-Seq.S29_L006_R1.A C3L-05398 LSCC miRNA-Seq tissue_normal CPT0289780009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAACTA_S29_L006_R1_001.unaln.bam 254959213 BAM S29_L006_R1 submitted_unaligned CPTAC3 19714bee-4277-4547-8b8e-352e7f57afe9 19e04a2ecc0e41ee7e55884663de1b97 {"aliquot_tag": "ALQ_24e5eaf0", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.miRNA-Seq.T.hg38 C3L-05398 LSCC miRNA-Seq tumor CPT0289770009 0f86b032-ad3c-4b3d-8a3e-24543c9c18dc_mirnaseq_gdc_realn.bam 231977990 BAM harmonized CPTAC3 cb1cab26-0c9c-4080-8ad6-a410e0f4b1f5 dede333cd823d4d14b88a0e0141b5022 {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.RNA-Seq.chimeric.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.chimeric.gdc_realn.bam 35977335 BAM chimeric harmonized CPTAC3 62cb30a4-1abc-4b20-a379-31bdea0ad946 25776e551b941e93f915cc8d912a1925 {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.RNA-Seq.chimeric.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.chimeric.gdc_realn.bam 98634446 BAM chimeric harmonized CPTAC3 94be9d2e-2d21-46c4-8c63-3b7388c34d91 a9580304f5e58fc982818a2b767dac71 {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.RNA-Seq.genomic.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.genomic.gdc_realn.bam 9460138664 BAM genomic harmonized CPTAC3 582c3e71-57eb-47f2-bd0c-9a4933a8edc9 abdc709052b09ba9a6f9ecca385f4b6c {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.RNA-Seq.genomic.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.genomic.gdc_realn.bam 8943998485 BAM genomic harmonized CPTAC3 a974c42f-d140-4c51-93a0-56f85332dc8a 00d3262fe7f8b21c935d49198c1a5dcf {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.RNA-Seq.S14_L004_R1.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 4347614522 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 559e0a4d-43e7-4356-8844-a67519deb855 b8a24e8d813eaa182abd4af8acfadc95 {"aliquot_tag": "ALQ_24e5eaf0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.RNA-Seq.S14_L004_R2.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 5305242192 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 518ff125-0abf-4891-9441-934761829e97 6c0511574fbf79f558bf7eaa39784d9f {"aliquot_tag": "ALQ_24e5eaf0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.RNA-Seq.S8_L002_R1.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R1_001.fastq.gz 4516879160 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 a764f9f2-fbb8-412e-a9d6-ddbe753b6c34 4b4d895e771c3ac3a51928696b48ce56 {"aliquot_tag": "ALQ_a6b57d21", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.RNA-Seq.S8_L002_R2.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R2_001.fastq.gz 4841907943 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 efe1ce9f-52c4-4fe9-973a-4f8fdee733cd 61dbb12da6d389d6e65f0e56f3cdb8d9 {"aliquot_tag": "ALQ_a6b57d21", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.RNA-Seq.transcriptome.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.transcriptome.gdc_realn.bam 11538109716 BAM transcriptome harmonized CPTAC3 d86399bc-5a27-4ddf-9db3-ffed7318fa42 ec6e2c876755fe1794d0496a3f53fb57 {"aliquot_tag": "ALQ_24e5eaf0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.RNA-Seq.transcriptome.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.transcriptome.gdc_realn.bam 12390633136 BAM transcriptome harmonized CPTAC3 d75094ae-79fa-4198-933b-10b838b8fff7 f6c015047a0137378eeb414297eb8bc8 {"aliquot_tag": "ALQ_a6b57d21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.WGS.N C3L-05398 LSCC WGS blood_normal CPT0289890002 CPT0289890002.WholeGenome.RP-2158.bam 22166431043 BAM submitted_aligned CPTAC3 afe82521-b42a-4564-a57d-60a3c973d526 9593638f0233431b9771c57d37191951 {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05398.WGS.N.hg38 C3L-05398 LSCC WGS blood_normal CPT0289890002 b2d4cbfa-fc45-4f6c-b41d-675846d7c828_wgs_gdc_realn.bam 65940184957 BAM harmonized CPTAC3 f3085b9f-ee54-42e0-8e81-374a8cdbee7a c77414e792da1050339d90fe33133356 {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05398.WGS.T C3L-05398 LSCC WGS tumor CPT0289770006 CPT0289770006.WholeGenome.RP-2158.bam 35078359327 BAM submitted_aligned CPTAC3 29e6c3e4-832f-420f-a93e-2333cf07d63c 6aabbe7a31cd3472494df69113a1e91d {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.WGS.T C3L-05398 LSCC WGS tumor CPT0289770006 CPT0289770006.WholeGenome.RP-2158.bam 35133235492 BAM submitted_aligned CPTAC3 7b405845-2218-4029-9702-3363067a5c59 5f8f2b693f3e64169d97ba6ad64bca4c {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-05398.WGS.T.hg38 C3L-05398 LSCC WGS tumor CPT0289770006 fc6dcae6-aad0-4bef-a15f-59401c7f1c04_wgs_gdc_realn.bam 103871178142 BAM harmonized CPTAC3 34bb8109-aeb8-45f9-8f6a-c9e0236979ef 9a2b72cf71e4a8357a36445fcad01eb7 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.WXS.A C3L-05398 LSCC WXS tissue_normal CPT0289780006 CPT0289780006.WholeExome.RP-1303.bam 19832566311 BAM submitted_aligned CPTAC3 97d462dc-0034-4e26-8ad3-7d148acb4048 5099014ad6554ddcfad3be8891d80821 {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.WXS.A.hg38 C3L-05398 LSCC WXS tissue_normal CPT0289780006 3ee8bb0c-1283-42d4-b901-4896525c6866_wxs_gdc_realn.bam 27280056746 BAM harmonized CPTAC3 ccbd03ce-910a-472b-a773-3f0ad6b079d0 422f7d0f1dec4cf121eabae1f21f6dab {"aliquot_tag": "ALQ_b45af761", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05398.WXS.N C3L-05398 LSCC WXS blood_normal CPT0289890002 CPT0289890002.WholeExome.RP-1303.bam 26609995148 BAM submitted_aligned CPTAC3 fde6427b-f93a-4a94-b932-347006a616b4 a7f4c71aa518589984fb5eeb9595f609 {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05398.WXS.N.hg38 C3L-05398 LSCC WXS blood_normal CPT0289890002 b2d4cbfa-fc45-4f6c-b41d-675846d7c828_wxs_gdc_realn.bam 35872575140 BAM harmonized CPTAC3 4e1f597e-f0e9-49bf-bdda-48b221ce70fa 25107d86b0d1209791480b294fffb78f {"aliquot_tag": "ALQ_7f01a81d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05398.WXS.T C3L-05398 LSCC WXS tumor CPT0289770006 CPT0289770006.WholeExome.RP-1303.bam 20118186750 BAM submitted_aligned CPTAC3 89fb2f0f-e9dd-48ec-a336-017227996c93 5d39dabc7f73bfaddbfc51b2b2b5d606 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05398.WXS.T.hg38 C3L-05398 LSCC WXS tumor CPT0289770006 fc6dcae6-aad0-4bef-a15f-59401c7f1c04_wxs_gdc_realn.bam 28536039965 BAM harmonized CPTAC3 ab5cfb81-b05e-499f-a1a1-389f7c9d6db5 75f60503d304a90199d23ca5b2b29d39 {"aliquot_tag": "ALQ_360a60b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.MethArray.Green.A C3L-05399 LSCC Methylation_Array tissue_normal CPT0292210006 204367490084_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 527facd7-d391-4380-a451-5009cd459898 23a78d8dc8a88fe6f3c73c2b434786d3 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.MethArray.Green.T C3L-05399 LSCC Methylation_Array tumor CPT0292150009 204367490090_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 fb60a1af-0710-4ee6-9101-e75f118cc989 30f005b37eb21075f964438f845af8be {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.MethArray.Red.A C3L-05399 LSCC Methylation_Array tissue_normal CPT0292210006 204367490084_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 ece08d1d-a570-48bb-ab95-aaeed5e8399a 5d968694f7833f640aa35c526e573f29 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.MethArray.Red.T C3L-05399 LSCC Methylation_Array tumor CPT0292150009 204367490090_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 575a9a8d-2dea-43f3-b33c-26ed7a783769 062bdf52e7f94cacc52eb0c5a3fce98b {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.miRNA-Seq.A.hg38 C3L-05399 LSCC miRNA-Seq tissue_normal CPT0292210009 08cb4000-0b8f-4c9a-bfa2-a9b748fb296b_mirnaseq_gdc_realn.bam 275549651 BAM harmonized CPTAC3 04fc4299-3fc6-4fa7-b490-579e42ec465e d31c3a2c87cb351cb6e0b1635afaf502 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.miRNA-Seq.S35_L006_R1.A C3L-05399 LSCC miRNA-Seq tissue_normal CPT0292210009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATTTT_S35_L006_R1_001.unaln.bam 246593540 BAM S35_L006_R1 submitted_unaligned CPTAC3 7a25d892-dd46-42fe-87ae-3c0d8f6de190 7bbf7317ec2baec9b4137a61313fd11a {"aliquot_tag": "ALQ_b7954d56", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.miRNA-Seq.S6_L006_R1.T C3L-05399 LSCC miRNA-Seq tumor CPT0292150006 200224_UNC31-K00269_0267_AHC722BBXY_GCCAAT_S6_L006_R1_001.unaln.bam 256427944 BAM S6_L006_R1 submitted_unaligned CPTAC3 df259b80-70fc-4d88-8e11-f673b9183e99 cafcdb2a4b3746bcc3530ff2ecfdcfdc {"aliquot_tag": "ALQ_543e84a9", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.miRNA-Seq.T.hg38 C3L-05399 LSCC miRNA-Seq tumor CPT0292150006 5c939937-4bfa-4ada-bc15-0ea949ba843f_mirnaseq_gdc_realn.bam 285826870 BAM harmonized CPTAC3 17e8cfd0-2f7a-4254-8f25-272d63502c3a bfa6c0ad19cbf65b357dbd9b8c89e062 {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.RNA-Seq.chimeric.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.chimeric.gdc_realn.bam 34690553 BAM chimeric harmonized CPTAC3 8a408785-bd51-46bd-863a-208e121217a7 cfb9826fc86a78c67d199de9c849db49 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.RNA-Seq.chimeric.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.chimeric.gdc_realn.bam 88596085 BAM chimeric harmonized CPTAC3 b66bfb1c-503e-473d-be07-0579754987d7 0c43af9eaff91f8767b64ac8b94e4485 {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.RNA-Seq.genomic.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.genomic.gdc_realn.bam 9382949745 BAM genomic harmonized CPTAC3 c3f148a8-e7df-46e6-a37a-66bc1b1d753c 5b101f8aed88f8a22b1cfaaaf03e4515 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.RNA-Seq.genomic.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.genomic.gdc_realn.bam 7505844880 BAM genomic harmonized CPTAC3 84a0f3b7-4baa-4836-b2ed-dd6cc4d82d81 fd1ea7873e80481f175887cf12aa071c {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.RNA-Seq.S17_L005_R1.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R1_001.fastq.gz 4375558197 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 54b80256-8772-4b8d-9a7f-ebe7fd0df3f9 b41e20884df30ff3d9379e19023aed26 {"aliquot_tag": "ALQ_b7954d56", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.RNA-Seq.S17_L005_R2.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R2_001.fastq.gz 5243812287 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 8d4dbbef-5e02-4842-aeec-e5c0ab187b00 0734dfd836ed6fc484c675a6b76d6336 {"aliquot_tag": "ALQ_b7954d56", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.RNA-Seq.S22_L006_R1.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R1_001.fastq.gz 3771340480 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 3cc607b5-5a8e-4109-ac61-0059723dbfa6 722bc509d4a5918124de4778b06d0849 {"aliquot_tag": "ALQ_543e84a9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.RNA-Seq.S22_L006_R2.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R2_001.fastq.gz 3965071810 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 896aac7d-de87-4317-ab43-c555fae45f42 d408ea1fa04b5885c6d41c20390f1145 {"aliquot_tag": "ALQ_543e84a9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.RNA-Seq.transcriptome.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.transcriptome.gdc_realn.bam 10926535761 BAM transcriptome harmonized CPTAC3 e4762b53-ec07-4264-8942-67fdd2308d80 a309c757669119086beeb48fcbd6a920 {"aliquot_tag": "ALQ_b7954d56", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.RNA-Seq.transcriptome.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.transcriptome.gdc_realn.bam 9776364121 BAM transcriptome harmonized CPTAC3 ee082981-2a07-424c-ad81-ad000a5c9164 24b55788f7db9b6173f4f2c6bfb71d1a {"aliquot_tag": "ALQ_543e84a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.WGS.N C3L-05399 LSCC WGS blood_normal CPT0292300002 CPT0292300002.WholeGenome.RP-2158.bam 29098002847 BAM submitted_aligned CPTAC3 f4cf7ae7-71fe-47b2-b355-32ec611bab04 ed1ecc10769cb4801cc5558776f91a30 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05399.WGS.N.hg38 C3L-05399 LSCC WGS blood_normal CPT0292300002 b7a0ca13-78c2-4771-a5ed-4cf45eeb5b64_wgs_gdc_realn.bam 84751565821 BAM harmonized CPTAC3 dd68a938-11e8-40d0-b712-e83bde34b0bf 33f33a1a541438b04e7ab25047670b21 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05399.WGS.T C3L-05399 LSCC WGS tumor CPT0292150009 CPT0292150009.WholeGenome.RP-2158.bam 28893837928 BAM submitted_aligned CPTAC3 b0cab097-d50e-4eca-a5a4-f794bca0288c 254307958ba942f644c3936031a1b491 {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.WGS.T.hg38 C3L-05399 LSCC WGS tumor CPT0292150009 c2f89f93-a3b2-468e-b80c-a997cbb57d30_wgs_gdc_realn.bam 85471524467 BAM harmonized CPTAC3 85ba706e-0a65-4b72-ac67-50864ea65870 648e271d936b5231e89790631698214f {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.WXS.A C3L-05399 LSCC WXS tissue_normal CPT0292210006 CPT0292210006.WholeExome.RP-1303.bam 19598352377 BAM submitted_aligned CPTAC3 51d7a3c5-c897-4ca8-a5a8-ac1df00d4b91 69619567c09049d88f332218441c1cb9 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.WXS.A.hg38 C3L-05399 LSCC WXS tissue_normal CPT0292210006 b81f0f9a-c4eb-4700-ba25-c3473a602d8e_wxs_gdc_realn.bam 27341127996 BAM harmonized CPTAC3 4e7b5dc0-49f1-4814-b6f9-bc9a8374c325 cc957e78e97ec047de10f2f6523a2e51 {"aliquot_tag": "ALQ_272a50c7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05399.WXS.N C3L-05399 LSCC WXS blood_normal CPT0292300002 CPT0292300002.WholeExome.RP-1303.bam 52531235106 BAM submitted_aligned CPTAC3 b9e1541b-420f-4c8f-9aa4-3ea9732607e6 17d66f0fd9908be6e30ec1a305e4e580 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05399.WXS.N.hg38 C3L-05399 LSCC WXS blood_normal CPT0292300002 b7a0ca13-78c2-4771-a5ed-4cf45eeb5b64_wxs_gdc_realn.bam 72191038773 BAM harmonized CPTAC3 5531531a-1ec7-454d-8c99-6874c502ba9a 098358a258e1f2ab24d57118e6b45942 {"aliquot_tag": "ALQ_d67b6ecb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05399.WXS.T C3L-05399 LSCC WXS tumor CPT0292150009 CPT0292150009.WholeExome.RP-1303.bam 18100035542 BAM submitted_aligned CPTAC3 bb80f316-fe41-47d5-8159-d3d79be1dd81 c9b8061c210080d2a83451dd5e665d65 {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05399.WXS.T.hg38 C3L-05399 LSCC WXS tumor CPT0292150009 c2f89f93-a3b2-468e-b80c-a997cbb57d30_wxs_gdc_realn.bam 25091863019 BAM harmonized CPTAC3 062181be-9e9d-4861-88e8-febfa0b011d6 e0119eb871cb840299dd7e30e3f1b10c {"aliquot_tag": "ALQ_c4819938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.MethArray.Green.A C3L-05411 LSCC Methylation_Array tissue_normal CPT0294290006 204372030023_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 bbc7541e-0daf-4ef3-ae41-edc6460fdf2c 15457df52b4c434e9ebffcf4536620b6 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.MethArray.Green.T C3L-05411 LSCC Methylation_Array tumor CPT0293160006 204372030013_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 cc0a69f1-0af1-44d7-b3b6-7528492ce610 776ae4c72cdd9b41dbb6181e0dd9b116 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.MethArray.Red.A C3L-05411 LSCC Methylation_Array tissue_normal CPT0294290006 204372030023_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 ecf872d8-23bc-4668-b25e-2f79ad61d7ab 23b9ecf52343ef80e203852b9ca0e438 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.MethArray.Red.T C3L-05411 LSCC Methylation_Array tumor CPT0293160006 204372030013_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 d94fc078-d252-40b8-adf7-fb945d638907 a991d2b6a5231baef6b03b18cb6981b4 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.miRNA-Seq.A.hg38 C3L-05411 LSCC miRNA-Seq tissue_normal CPT0294290009 33b214a7-e157-4d31-abde-627c50d76713_mirnaseq_gdc_realn.bam 301914047 BAM harmonized CPTAC3 464567ec-27db-4e9f-8d01-325863113294 57b6650edfd32930295ad314b1dd73c7 {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.miRNA-Seq.S17_L001_R1.T C3L-05411 LSCC miRNA-Seq tumor CPT0293160009 200325_UNC31-K00269_0272_AHHC2NBBXY_GACGAC_S17_L001_R1_001.unaln.bam 227657933 BAM S17_L001_R1 submitted_unaligned CPTAC3 049338ba-5110-4839-9bf8-bbc9cb0edece 28398fe2352469cc2f060e8f2aa24f53 {"aliquot_tag": "ALQ_2556e85c", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.miRNA-Seq.S36_L006_R1.A C3L-05411 LSCC miRNA-Seq tissue_normal CPT0294290009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCAACA_S36_L006_R1_001.unaln.bam 269057680 BAM S36_L006_R1 submitted_unaligned CPTAC3 1d7385ea-e700-48fb-a323-e260e0db87a5 239d1bec258b98e9ae1eea94572a3009 {"aliquot_tag": "ALQ_e43533ad", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.miRNA-Seq.T.hg38 C3L-05411 LSCC miRNA-Seq tumor CPT0293160009 8c83d60f-98d3-4be1-93b2-63c47802e40a_mirnaseq_gdc_realn.bam 245528846 BAM harmonized CPTAC3 22636ca5-07f5-46fe-a9f8-fde9791def46 a8aa1151571a6c748c2c70e35b6736db {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.RNA-Seq.chimeric.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.chimeric.gdc_realn.bam 28112789 BAM chimeric harmonized CPTAC3 fc05db91-2981-4261-a82b-dcdae17d04f8 5696b0a9f47ed992411bc6eee3090eed {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.RNA-Seq.chimeric.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.chimeric.gdc_realn.bam 62205983 BAM chimeric harmonized CPTAC3 f909364e-cd84-49c9-b3f7-759431bb50ee 2f55531ec573d12543898728f2cf2fdf {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.RNA-Seq.genomic.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.genomic.gdc_realn.bam 7532366014 BAM genomic harmonized CPTAC3 e00e07a7-6eeb-4d6f-a000-114d5cca6a42 e9c5eb43a11602c46efbfa6601af68bf {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.RNA-Seq.genomic.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.genomic.gdc_realn.bam 8305161119 BAM genomic harmonized CPTAC3 a3ef45b7-93da-4e12-8273-7e0922b1a0ea a96eb5b5ec346debcd0d09c7965ca9fb {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.RNA-Seq.S19_L005_R1.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R1_001.fastq.gz 3405054575 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 3342b740-1f04-480f-ae1d-17341e98ca9c e36ab2e1455c26a56d7941f4b6bc7230 {"aliquot_tag": "ALQ_e43533ad", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.RNA-Seq.S19_L005_R2.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R2_001.fastq.gz 4128482183 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 14c35597-59b5-44df-8544-f586ecdd6ec1 bfab8a1bd0869c59b0efcc61d514f9ca {"aliquot_tag": "ALQ_e43533ad", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.RNA-Seq.S25_L007_R1.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R1_001.fastq.gz 4245426142 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 07570cfe-95d4-4547-8a49-cd0f32374d58 0136716eb226361f36c4e77326e86b72 {"aliquot_tag": "ALQ_2556e85c", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.RNA-Seq.S25_L007_R2.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R2_001.fastq.gz 4377701426 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 78f30461-f5e1-4177-a3c4-4b4b1c55ad62 efdbb535018865096ae737c0a74c31a0 {"aliquot_tag": "ALQ_2556e85c", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.RNA-Seq.transcriptome.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.transcriptome.gdc_realn.bam 8746875187 BAM transcriptome harmonized CPTAC3 39efbcfe-b0ba-47b6-86af-97961f3f636b 969deebc02cdb11104840c0296935928 {"aliquot_tag": "ALQ_e43533ad", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.RNA-Seq.transcriptome.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.transcriptome.gdc_realn.bam 11650183014 BAM transcriptome harmonized CPTAC3 671837da-56cf-452b-b9af-1ab6e79a07fc c62c910713efcb0e0001770755f03e35 {"aliquot_tag": "ALQ_2556e85c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.WGS.N C3L-05411 LSCC WGS blood_normal CPT0294390002 CPT0294390002.WholeGenome.RP-2158.bam 20306842382 BAM submitted_aligned CPTAC3 2fb8bd38-6383-4b84-a2fa-a50a00d2f3b7 eb6f4c8d561d3f0878e591d0462c8a79 {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05411.WGS.N.hg38 C3L-05411 LSCC WGS blood_normal CPT0294390002 1cf403f3-2850-4007-b4c2-996b29398e5f_wgs_gdc_realn.bam 59429608256 BAM harmonized CPTAC3 02318ce0-ed93-4b52-8861-f1bad1b7927f 827896e74e77e3166f6bbb6731f35a3a {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05411.WGS.T C3L-05411 LSCC WGS tumor CPT0293160006 CPT0293160006.WholeGenome.RP-2158.bam 22658753532 BAM submitted_aligned CPTAC3 f056e279-87b9-4570-b509-a22a26f90d15 23c801c10b4af93220eefa8d91e7b7cc {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.WGS.T.hg38 C3L-05411 LSCC WGS tumor CPT0293160006 bbc687be-ab91-452e-a017-229e2202463f_wgs_gdc_realn.bam 68111853652 BAM harmonized CPTAC3 93a1dc32-4c45-44e1-bf2b-5680b7a955b9 eb19765f08cf7ceeaae71d13b1247a45 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.WXS.A C3L-05411 LSCC WXS tissue_normal CPT0294290006 CPT0294290006.WholeExome.RP-1303.bam 23111264672 BAM submitted_aligned CPTAC3 f4f098f3-22bc-4c5a-8019-87eefba52bc4 ed7cd4fba60717e09c766c39eb84f869 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.WXS.A.hg38 C3L-05411 LSCC WXS tissue_normal CPT0294290006 4109df44-16a0-40be-96ab-1c0d1048d8b3_wxs_gdc_realn.bam 32122979395 BAM harmonized CPTAC3 2426dcfe-e6dc-415a-9249-ee056cdd976d a7015ce086bcea4cc676f87d87f731a0 {"aliquot_tag": "ALQ_748a2e3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05411.WXS.N C3L-05411 LSCC WXS blood_normal CPT0294390002 CPT0294390002.WholeExome.RP-1303.bam 25141306514 BAM submitted_aligned CPTAC3 21adfdc3-55f0-4b3e-a75d-421851b9c011 88d93ca5f15485174fbde647286bbe7a {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05411.WXS.N.hg38 C3L-05411 LSCC WXS blood_normal CPT0294390002 1cf403f3-2850-4007-b4c2-996b29398e5f_wxs_gdc_realn.bam 34555619212 BAM harmonized CPTAC3 f95e7e57-2ee4-4f76-8a67-bb6954544f1b a6404c08d947f4a69e217d714f10570d {"aliquot_tag": "ALQ_b8bb3980", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05411.WXS.T C3L-05411 LSCC WXS tumor CPT0293160006 CPT0293160006.WholeExome.RP-1303.bam 28796980033 BAM submitted_aligned CPTAC3 69e466fc-0c93-462d-a702-99e5d8c956fa f17373010a3e8e384935d7fc0738cd8a {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05411.WXS.T.hg38 C3L-05411 LSCC WXS tumor CPT0293160006 bbc687be-ab91-452e-a017-229e2202463f_wxs_gdc_realn.bam 39262643974 BAM harmonized CPTAC3 ea77567a-73ba-4d64-b496-009c5f70f08e 16f59d5833dfbaa4c929125816944ef6 {"aliquot_tag": "ALQ_b5e9f5cd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.MethArray.Green.A C3L-05417 LSCC Methylation_Array tissue_normal CPT0328490006 204367490056_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 2199d590-3c0c-4153-ad2b-c20a3ce73632 d6e30bf8e27e511d7bc25aa75388d4ee {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.MethArray.Green.T C3L-05417 LSCC Methylation_Array tumor CPT0328450006 204367490084_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 b98f513e-5bd6-478c-933e-05a2e333233a 3118ed0127b1b9c05623fc3a8b383a6c {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.MethArray.Red.A C3L-05417 LSCC Methylation_Array tissue_normal CPT0328490006 204367490056_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 1220adfa-be55-48d7-a8f4-34c0342fd52f e2eb2c1c5cbb4b7f12fb2f1ecf339e69 {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.MethArray.Red.T C3L-05417 LSCC Methylation_Array tumor CPT0328450006 204367490084_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 6f9b985f-5626-4030-97e2-171175bda3d3 11ead99ae4d8a717d33eac9ddb8046c8 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.miRNA-Seq.A.hg38 C3L-05417 LSCC miRNA-Seq tissue_normal CPT0328490009 7b6568f2-d2f8-496b-8965-e50c61dabb8d_mirnaseq_gdc_realn.bam 188351234 BAM harmonized CPTAC3 a91ddb39-b62d-411e-9639-d583ddf2de07 338bd0d0461be34c8c65aa3181a12f7a {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.miRNA-Seq.S26_L006_R1.A C3L-05417 LSCC miRNA-Seq tissue_normal CPT0328490009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATGAGC_S26_L006_R1_001.unaln.bam 172910619 BAM S26_L006_R1 submitted_unaligned CPTAC3 93f4b83c-cf41-4fcf-800c-8751b028f5ff e1f9cadcc5df42329123ceaa6b1a7c39 {"aliquot_tag": "ALQ_bfddb2d1", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.miRNA-Seq.S45_L006_R1.T C3L-05417 LSCC miRNA-Seq tumor CPT0328450009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCATTC_S45_L006_R1_001.unaln.bam 186403407 BAM S45_L006_R1 submitted_unaligned CPTAC3 6eb0206d-c576-4309-824e-7fc06b94e3b0 0905b3e29560749de4d6e43c1e71ef02 {"aliquot_tag": "ALQ_7a2d5fd0", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.miRNA-Seq.T.hg38 C3L-05417 LSCC miRNA-Seq tumor CPT0328450009 f306f1de-ae6e-49b6-ae75-47f89122a04d_mirnaseq_gdc_realn.bam 205717521 BAM harmonized CPTAC3 377a346b-e261-4f32-9c3a-82953eecf03a a2e2f1e9fa6a465bccbf957fa87049b1 {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.RNA-Seq.chimeric.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.chimeric.gdc_realn.bam 26916285 BAM chimeric harmonized CPTAC3 c81f3c1f-1351-41b0-a17f-a3c6ae097621 19c41ac4d1749edd49280953d80d7f8e {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.RNA-Seq.chimeric.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.chimeric.gdc_realn.bam 32673412 BAM chimeric harmonized CPTAC3 1aac26a4-9710-4321-bc5e-ad04d8897799 ce96383de68964465e37530ec89cfea6 {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.RNA-Seq.genomic.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.genomic.gdc_realn.bam 7770820426 BAM genomic harmonized CPTAC3 1a4caf90-50c5-492c-8ffa-96a8559681c7 7ecd334f95fc736ac7afedcfa34a1e97 {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.RNA-Seq.genomic.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.genomic.gdc_realn.bam 9184540201 BAM genomic harmonized CPTAC3 388af169-c07b-4593-bb00-96068262f5d8 22c5052c49123b8b70bb8e24e50c01fb {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.RNA-Seq.S11_L003_R1.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3275553191 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 47b8fcfb-4b58-4787-8d6f-f5b583d4de85 81b33c9737b53f749c2f6cfe5a16f9da {"aliquot_tag": "ALQ_bfddb2d1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.RNA-Seq.S11_L003_R2.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4086797292 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 987d6444-de01-4a5e-8fd7-b634ed325946 f21ee00a7268548edfc3cdb137377993 {"aliquot_tag": "ALQ_bfddb2d1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.RNA-Seq.S30_L008_R1.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R1_001.fastq.gz 4088607192 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 5920b4ba-74d8-4ccb-8183-fc1c4fc07b8d 49599a5fd637b39fe60abd9e481ffd12 {"aliquot_tag": "ALQ_7a2d5fd0", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.RNA-Seq.S30_L008_R2.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R2_001.fastq.gz 5175218640 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 d727d5e2-2348-44a1-bfd4-6560fe45cf58 afb63e2944b2c5471c71ffe580f59ccc {"aliquot_tag": "ALQ_7a2d5fd0", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.RNA-Seq.transcriptome.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.transcriptome.gdc_realn.bam 7712584190 BAM transcriptome harmonized CPTAC3 b00717e0-18e7-4228-9087-8f9f93fe297d bc0b6005c44e53ad62d5ea57b6b67b72 {"aliquot_tag": "ALQ_bfddb2d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.RNA-Seq.transcriptome.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.transcriptome.gdc_realn.bam 12004740375 BAM transcriptome harmonized CPTAC3 e8415e4e-d212-45af-8079-bde38076bc54 a601901b96a8184291398f5d05cc2af6 {"aliquot_tag": "ALQ_7a2d5fd0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.WGS.N C3L-05417 LSCC WGS blood_normal CPT0328590002 CPT0328590002.WholeGenome.RP-2158.bam 32329743122 BAM submitted_aligned CPTAC3 cd63e13c-c29e-4b71-b869-7c05f20cbb2d 78239c03adca13d8a851c68627ae914a {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05417.WGS.N.hg38 C3L-05417 LSCC WGS blood_normal CPT0328590002 e23f6a2d-a1b0-4d06-8422-e974a789d4c9_wgs_gdc_realn.bam 98268443888 BAM harmonized CPTAC3 de2db24a-2b8b-46a0-80dd-d624854d697b ef2ed42197d185b504f1d971500d3e76 {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05417.WGS.T C3L-05417 LSCC WGS tumor CPT0328450006 CPT0328450006.WholeGenome.RP-2158.bam 25818367007 BAM submitted_aligned CPTAC3 98939581-465f-4811-ab8f-6dec3e8982b3 cb2508c1981f68dcf6868bd675c51a85 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.WGS.T.hg38 C3L-05417 LSCC WGS tumor CPT0328450006 216d2dbb-6bc1-4860-ab70-6fe360188711_wgs_gdc_realn.bam 73162076025 BAM harmonized CPTAC3 ae569a6e-4c00-49af-b9cb-523c4af30ba9 d5b8543ef4d05c3cc099f61541a0dd99 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.WXS.A C3L-05417 LSCC WXS tissue_normal CPT0328490006 CPT0328490006.WholeExome.RP-1303.bam 21746804577 BAM submitted_aligned CPTAC3 3a95f3a5-b4ea-4ca0-88a0-1c61694398dc a437cd7fcbf9866d8f4ffb8c981e6c42 {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.WXS.A.hg38 C3L-05417 LSCC WXS tissue_normal CPT0328490006 1966deaa-e994-44dd-90ee-82caaf359a5b_wxs_gdc_realn.bam 29730773235 BAM harmonized CPTAC3 077508b4-dea4-41d3-89aa-29a0846fe7de 1fe7383700e80cfdc23c5e7eed57c5e7 {"aliquot_tag": "ALQ_2f62af40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05417.WXS.N C3L-05417 LSCC WXS blood_normal CPT0328590002 CPT0328590002.WholeExome.RP-1303.bam 19303925202 BAM submitted_aligned CPTAC3 6060588b-41e7-4dd9-9664-94e289138d58 2449ee6a2484e1400572af0d950329c5 {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05417.WXS.N.hg38 C3L-05417 LSCC WXS blood_normal CPT0328590002 e23f6a2d-a1b0-4d06-8422-e974a789d4c9_wxs_gdc_realn.bam 26758998432 BAM harmonized CPTAC3 94540fa4-9fc3-46e2-8343-966888de928a b5433762761ce91727617e614793ff2c {"aliquot_tag": "ALQ_e353b8fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05417.WXS.T C3L-05417 LSCC WXS tumor CPT0328450006 CPT0328450006.WholeExome.RP-1303.bam 20982682894 BAM submitted_aligned CPTAC3 99a34aa7-6a5c-4630-b95a-b4a74b4946c7 138f96e82811672999838c8de251b773 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05417.WXS.T.hg38 C3L-05417 LSCC WXS tumor CPT0328450006 216d2dbb-6bc1-4860-ab70-6fe360188711_wxs_gdc_realn.bam 28578077207 BAM harmonized CPTAC3 63bc1386-23fd-4282-8b6b-e0f8c0d2beef 96d02e8aa3798613acd3af07d09caa01 {"aliquot_tag": "ALQ_ea924241", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.MethArray.Green.A C3L-05420 LSCC Methylation_Array tissue_normal CPT0292020006 204367490048_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 244d6d9d-8e97-4e57-8e74-40c7614c9309 1adf63ab1bf98299f0c531caba1ea997 {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.MethArray.Green.T C3L-05420 LSCC Methylation_Array tumor CPT0291980006 204367490043_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 b98153ae-62ba-4cac-a3c2-6edff0a32c7a 9bbb207be0853369baacd4b9dc63eacb {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.MethArray.Red.A C3L-05420 LSCC Methylation_Array tissue_normal CPT0292020006 204367490048_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 758edcf0-55f0-4dbf-9e69-d5c5bff78352 bd606855aeba11272855ed9f2f5c8fbe {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.MethArray.Red.T C3L-05420 LSCC Methylation_Array tumor CPT0291980006 204367490043_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 9afc67a0-5cfe-48ec-a756-15586f9f5209 feed436a35ba17a96388c477f1e46771 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.miRNA-Seq.A.hg38 C3L-05420 LSCC miRNA-Seq tissue_normal CPT0292020009 d5ddd596-21a2-4470-a89b-acf47035a3f0_mirnaseq_gdc_realn.bam 263638212 BAM harmonized CPTAC3 6960c0ad-945a-4677-a37e-c2bd451b77aa 426a7761a723814fae359c1f11451f76 {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.miRNA-Seq.S34_L006_R1.A C3L-05420 LSCC miRNA-Seq tissue_normal CPT0292020009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATGGC_S34_L006_R1_001.unaln.bam 234287785 BAM S34_L006_R1 submitted_unaligned CPTAC3 4d27d9ef-e49a-4fef-a2a7-f2d8e9cf37ee 8ad75342afa25acc07d4df4e1b33aa6c {"aliquot_tag": "ALQ_bdfd968d", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.miRNA-Seq.S6_L001_R1.T C3L-05420 LSCC miRNA-Seq tumor CPT0291980009 200325_UNC31-K00269_0272_AHHC2NBBXY_CACCGG_S6_L001_R1_001.unaln.bam 249602173 BAM S6_L001_R1 submitted_unaligned CPTAC3 82e6d604-6f17-4851-ad6b-4fe435fe9fb4 bce53c2790882897b3a1565591e649ba {"aliquot_tag": "ALQ_e1aac579", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.miRNA-Seq.T.hg38 C3L-05420 LSCC miRNA-Seq tumor CPT0291980009 e1a0938f-0147-487d-8114-7c9c92babfff_mirnaseq_gdc_realn.bam 269847098 BAM harmonized CPTAC3 d63ed244-083f-4167-b763-ad28d8253ba5 063b566daaa8e4ef11105ee13353b055 {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.RNA-Seq.chimeric.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.chimeric.gdc_realn.bam 34527951 BAM chimeric harmonized CPTAC3 01f241be-9d01-43eb-b04a-2e421b3160ea fadc6622d72735b0be1595aa67ae911c {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.RNA-Seq.chimeric.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.chimeric.gdc_realn.bam 94264941 BAM chimeric harmonized CPTAC3 8db13e22-c6ee-4773-a56f-bc022f861a91 d430b5987a3acd178d25502ea441455a {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.RNA-Seq.genomic.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.genomic.gdc_realn.bam 8718897441 BAM genomic harmonized CPTAC3 fc526e5e-9cb7-45ce-8a6c-a355a64cce51 a4ff123d3df6c9757bad626b1db48ac7 {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.RNA-Seq.genomic.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.genomic.gdc_realn.bam 7520723183 BAM genomic harmonized CPTAC3 bb1ef32b-4211-4a38-a50c-c0b970a3b751 cf9b6ac2f5660d3e722808c51f88b709 {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.RNA-Seq.S14_L004_R1.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R1_001.fastq.gz 3695335244 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 c00ad80f-877c-4092-8150-37a3277af987 d41bd516abcdd563f98d591aa527fbfc {"aliquot_tag": "ALQ_e1aac579", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.RNA-Seq.S14_L004_R2.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R2_001.fastq.gz 3904269143 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 c2735bdb-f91e-4e67-a535-fd0210870666 d224af1bd0515d5b821f954153f15fe9 {"aliquot_tag": "ALQ_e1aac579", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.RNA-Seq.S18_L005_R1.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R1_001.fastq.gz 3846356115 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 0e305113-918e-44db-b305-707f5caf6fe2 739152f4ab0cff5ef45919070ef88499 {"aliquot_tag": "ALQ_bdfd968d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.RNA-Seq.S18_L005_R2.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R2_001.fastq.gz 4873807125 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 0cd31933-c48b-4ad4-8fb4-002b4db21496 fe8027dbef56655d3fe79eee466b91e8 {"aliquot_tag": "ALQ_bdfd968d", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.RNA-Seq.transcriptome.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.transcriptome.gdc_realn.bam 9925963783 BAM transcriptome harmonized CPTAC3 924ed0c6-0429-418c-b6c1-4906a67b006d 6fbb88ed5bdbbe02864a3defe2b26bc2 {"aliquot_tag": "ALQ_bdfd968d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.RNA-Seq.transcriptome.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.transcriptome.gdc_realn.bam 10554491384 BAM transcriptome harmonized CPTAC3 cf6d81d9-0858-463a-bd81-5bf55a7ad1bc 08f22054477099c564686b21b721d8d7 {"aliquot_tag": "ALQ_e1aac579", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.WGS.N C3L-05420 LSCC WGS blood_normal CPT0292120002 CPT0292120002.WholeGenome.RP-2158.bam 29184075501 BAM submitted_aligned CPTAC3 eeb6c62f-88d6-46e7-8a7d-7c5627fca1cf 133aef7885e3856c549b9e537cc0a470 {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05420.WGS.N.hg38 C3L-05420 LSCC WGS blood_normal CPT0292120002 1a3a6a41-a4d3-4b76-9184-5cede7fcb0bf_wgs_gdc_realn.bam 86668734517 BAM harmonized CPTAC3 eb81c000-0d62-401f-83f3-6bebe143f74f 542cf7f9c563507659f03e4ac5202f7b {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05420.WGS.T C3L-05420 LSCC WGS tumor CPT0291980006 CPT0291980006.WholeGenome.RP-2158.bam 23944172250 BAM submitted_aligned CPTAC3 cf84cdb6-12cf-4d2c-8cc5-7cf576db0d9f 6edee1b626c463cfd9d8806db8d75eb5 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.WGS.T.hg38 C3L-05420 LSCC WGS tumor CPT0291980006 7d038235-f19b-4a5c-9fff-f7fd27f8acbb_wgs_gdc_realn.bam 71263591027 BAM harmonized CPTAC3 c3dfec9d-0f22-434f-82ce-08a0a919146f 8fabd3211163c3ff9646b55cfddce775 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.WXS.A C3L-05420 LSCC WXS tissue_normal CPT0292020006 CPT0292020006.WholeExome.RP-1303.bam 20508112154 BAM submitted_aligned CPTAC3 5c189c9d-d16f-47e2-a395-8770b69822d2 57ae4d5e6f7e230d9c09af1e4d1efe80 {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.WXS.A.hg38 C3L-05420 LSCC WXS tissue_normal CPT0292020006 fd6eb8b1-f5e8-4dc6-af73-e79d5d4bb074_wxs_gdc_realn.bam 27949826990 BAM harmonized CPTAC3 ab2c17f3-8128-46a0-9675-83dd94561a1f 5128eaf6c4c8241aeac23fc6f9fbf69b {"aliquot_tag": "ALQ_2d428b1c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05420.WXS.N C3L-05420 LSCC WXS blood_normal CPT0292120002 CPT0292120002.WholeExome.RP-1303.bam 27636108898 BAM submitted_aligned CPTAC3 7c309a74-07f2-4d54-88d1-04b716acede6 5eb0daf18ea9d94210b3d492f380aaa5 {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05420.WXS.N.hg38 C3L-05420 LSCC WXS blood_normal CPT0292120002 1a3a6a41-a4d3-4b76-9184-5cede7fcb0bf_wxs_gdc_realn.bam 36238604335 BAM harmonized CPTAC3 bde5c3f4-cf28-4f06-8983-c57e05d96b6d 4403ceb01feb0d92142a918e9b38edb5 {"aliquot_tag": "ALQ_e1739ca0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05420.WXS.T C3L-05420 LSCC WXS tumor CPT0291980006 CPT0291980006.WholeExome.RP-1303.bam 30760178958 BAM submitted_aligned CPTAC3 3519efb0-cd3d-42b9-b39d-3875684a6249 cff104abbe30c530658259f02d1d05cb {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05420.WXS.T.hg38 C3L-05420 LSCC WXS tumor CPT0291980006 7d038235-f19b-4a5c-9fff-f7fd27f8acbb_wxs_gdc_realn.bam 42321548829 BAM harmonized CPTAC3 acbc39de-062d-4a87-8fed-98e5187da14c 010ad42186e6bb115e40836c3b816b30 {"aliquot_tag": "ALQ_7115d8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.MethArray.Green.A C3L-05422 LSCC Methylation_Array tissue_normal CPT0282760006 204367470157_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1ee5f40a-14a6-4600-82b9-176161c3f0c9 f68bf10a9b7360ae5366d392b4e27997 {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.MethArray.Green.T C3L-05422 LSCC Methylation_Array tumor CPT0282750006 204372030011_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a2f78a3b-17b8-40e3-9044-9b824d7dcd63 720b54d84f5817587949b1d7a638a1e6 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.MethArray.Red.A C3L-05422 LSCC Methylation_Array tissue_normal CPT0282760006 204367470157_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 25cbad9a-9e39-4e5e-bf09-af24960de3db 885296fda016299165928bfd6aa21ae2 {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.MethArray.Red.T C3L-05422 LSCC Methylation_Array tumor CPT0282750006 204372030011_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 026ab295-640b-4eb1-9fcd-7193054b73f2 24f9870300bbb47e0b3fde10497f37fd {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.miRNA-Seq.A.hg38 C3L-05422 LSCC miRNA-Seq tissue_normal CPT0282760009 ae215573-c2ad-4153-adf7-6b715401eb1d_mirnaseq_gdc_realn.bam 265323216 BAM harmonized CPTAC3 e1a490f6-a07e-4905-9aec-011940f3d1b8 8aa6442fa832a73adf32e2a0b7e41f96 {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.miRNA-Seq.S14_L001_R1.T C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L001_R1_001.unaln.bam 138996698 BAM S14_L001_R1 submitted_unaligned CPTAC3 577aecd2-8b8d-471a-b9be-7f6f1045506a 1db07931a12aff824ff922f073970332 {"aliquot_tag": "ALQ_de727abb", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.miRNA-Seq.S18_L006_R1.T C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 200224_UNC31-K00269_0267_AHC722BBXY_GTCCGC_S18_L006_R1_001.unaln.bam 146024716 BAM S18_L006_R1 submitted_unaligned CPTAC3 7db14e54-f5e1-44a9-8c6c-2fa854e77f6c 8777248151df24581a40d8cd16ceeeea {"aliquot_tag": "ALQ_de727abb", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.miRNA-Seq.S22_L005_R1.A C3L-05422 LSCC miRNA-Seq tissue_normal CPT0282760009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAGCTT_S22_L005_R1_001.unaln.bam 241429224 BAM S22_L005_R1 submitted_unaligned CPTAC3 66f62135-ee2e-430c-beea-05ab9c3fd9ea 4d311577c0bc71b0fd980220ea2b70a4 {"aliquot_tag": "ALQ_99d2006b", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.miRNA-Seq.T.hg38 C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 2e55dd0b-0d75-4982-bec5-9fea5940f075_mirnaseq_gdc_realn.bam 309080854 BAM harmonized CPTAC3 b74b1301-fb88-4903-8751-736481f9af02 b109c826ad9da2266f5b16b76fc418ab {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.RNA-Seq.chimeric.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.chimeric.gdc_realn.bam 34345752 BAM chimeric harmonized CPTAC3 b7966d03-ff56-4638-a34f-9cffcda2d9ee 28d6b2490d67ed984d7772e9ea95d79f {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.RNA-Seq.chimeric.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.chimeric.gdc_realn.bam 91501094 BAM chimeric harmonized CPTAC3 638dfcb0-9e5a-4300-9af7-4c3b607aaf8b 08550dec0e9677fcb2a6c890b8a8e2dc {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.RNA-Seq.genomic.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.genomic.gdc_realn.bam 8243733724 BAM genomic harmonized CPTAC3 3118106e-33bc-45ad-8e8c-1d5f5260b645 56e1eb067d9ed608a63d71f91f890dd3 {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.RNA-Seq.genomic.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.genomic.gdc_realn.bam 7533288510 BAM genomic harmonized CPTAC3 1a5af40f-8ae5-42e5-8eae-85bcff8dffda 38a4383553dd7553f13a45ec06b6e9c1 {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.RNA-Seq.S10_L007_R1.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R1_001.fastq.gz 4180932305 FASTQ S10_L007_R1 submitted_unaligned CPTAC3 edf97ae2-81b1-4e6f-9cde-b240d6c53e2d a5adfbcd9c8b724ad9faf8a8720cbeff {"aliquot_tag": "ALQ_99d2006b", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.RNA-Seq.S10_L007_R2.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R2_001.fastq.gz 4412938656 FASTQ S10_L007_R2 submitted_unaligned CPTAC3 d9ee245f-9d2e-4b9b-a400-6b63d59023e2 9c01eb15a282ce766d226b9a7ac1d0f0 {"aliquot_tag": "ALQ_99d2006b", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.RNA-Seq.S2_L001_R1.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R1_001.fastq.gz 3540967192 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 98deb929-394e-4521-a710-17a9ced8c563 200e6b63ae5e6305d92b12179b49d52d {"aliquot_tag": "ALQ_de727abb", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.RNA-Seq.S2_L001_R2.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R2_001.fastq.gz 3953983587 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 bdb1fa42-9e3e-4d2c-81ff-6bc23edfff98 e6a04f53ecd09463f7c5433ad5ccfaa7 {"aliquot_tag": "ALQ_de727abb", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.RNA-Seq.transcriptome.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.transcriptome.gdc_realn.bam 11108775006 BAM transcriptome harmonized CPTAC3 6a999b3a-4747-4291-866a-502b916f16eb 6b447e370993d0fce6118fe2aed029f2 {"aliquot_tag": "ALQ_99d2006b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.RNA-Seq.transcriptome.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.transcriptome.gdc_realn.bam 9388775502 BAM transcriptome harmonized CPTAC3 2cba8198-3ece-4df9-a5ae-dcec9f8ff27d 476ad4b4163aa067288cb1cc90ac2c75 {"aliquot_tag": "ALQ_de727abb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.WGS.N C3L-05422 LSCC WGS blood_normal CPT0282870002 CPT0282870002.WholeGenome.RP-2158.bam 20527970747 BAM submitted_aligned CPTAC3 53c13f63-138e-40ab-9e08-b81eeceebc01 1a58a6c570761dd6b22df8494f069ca7 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05422.WGS.N.hg38 C3L-05422 LSCC WGS blood_normal CPT0282870002 58dbf06a-1bc2-493f-905b-956771ec2bc8_wgs_gdc_realn.bam 60388857773 BAM harmonized CPTAC3 493be082-54f7-41a0-b48b-8282e4c88bcd 1e775aba3d149b7c145ee7fc26c2be92 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05422.WGS.T C3L-05422 LSCC WGS tumor CPT0282750006 CPT0282750006.WholeGenome.RP-2158.bam 21849410222 BAM submitted_aligned CPTAC3 19aee1e9-f55a-4d5e-9714-a6785cc901d1 131523ea97ef6f558f134d9e428bf8f9 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.WGS.T.hg38 C3L-05422 LSCC WGS tumor CPT0282750006 e1adca1b-d3ed-4a3c-9461-ba555f6dc9d5_wgs_gdc_realn.bam 64155383213 BAM harmonized CPTAC3 2f28496f-496d-4306-a731-b78675e1c6f5 8a9ece80062a0144f57e16f0e73c4a20 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.WXS.A C3L-05422 LSCC WXS tissue_normal CPT0282760006 CPT0282760006.WholeExome.RP-1303.bam 24151527536 BAM submitted_aligned CPTAC3 f80c05e1-c7bc-479f-ba63-ae2ea88863ac 39beb78883083b42fa5e3b18aec7e076 {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.WXS.A.hg38 C3L-05422 LSCC WXS tissue_normal CPT0282760006 6d55a111-6829-455b-a906-fac4278a4aec_wxs_gdc_realn.bam 33742031511 BAM harmonized CPTAC3 5099d6b3-eb42-451f-93a3-28aa9206a52e 36667199bd3362dc3d2836d03f3dc42c {"aliquot_tag": "ALQ_96d1dfa", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05422.WXS.N C3L-05422 LSCC WXS blood_normal CPT0282870002 CPT0282870002.WholeExome.RP-1303.bam 23894423966 BAM submitted_aligned CPTAC3 27416987-3453-46d0-a825-9825f82f5632 15972ab29783aca213d27829f579b0a9 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05422.WXS.N.hg38 C3L-05422 LSCC WXS blood_normal CPT0282870002 58dbf06a-1bc2-493f-905b-956771ec2bc8_wxs_gdc_realn.bam 31523052072 BAM harmonized CPTAC3 aef76482-2398-4850-84a5-d9f24de28e8d fdb75f8dabac4f13d4a79bfc990639a1 {"aliquot_tag": "ALQ_c2364286", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05422.WXS.T C3L-05422 LSCC WXS tumor CPT0282750006 CPT0282750006.WholeExome.RP-1303.bam 27829649619 BAM submitted_aligned CPTAC3 d5f95c55-28e2-4c56-a9d7-af2fb8b5be47 fc6a2d772c7b8d456d0107c47469fb99 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05422.WXS.T.hg38 C3L-05422 LSCC WXS tumor CPT0282750006 e1adca1b-d3ed-4a3c-9461-ba555f6dc9d5_wxs_gdc_realn.bam 38268593434 BAM harmonized CPTAC3 adad0686-9672-469d-9005-c57589b55b3b 14d18913c8aa1e987046bb922604c8a9 {"aliquot_tag": "ALQ_4ecd672a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.MethArray.Green.A C3L-05423 LSCC Methylation_Array tissue_normal CPT0282940006 204367490057_R07C01_Grn.idat 13677905 IDAT Green NA CPTAC3 b7530e2d-035c-4594-9a4d-3c3857c7ba7c b846f41f58398be75dc1cdd690618889 {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.MethArray.Green.T C3L-05423 LSCC Methylation_Array tumor CPT0282910006 204367490066_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8cbeb207-88e9-4301-81bf-d9af19ea1bfc e3b285c50841a07d84e65dce05eeece9 {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.MethArray.Red.A C3L-05423 LSCC Methylation_Array tissue_normal CPT0282940006 204367490057_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 ae984167-376d-45ec-a5eb-87c076eb32ca 1ed738f1cab32230a4472b868cd8dc6e {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.MethArray.Red.T C3L-05423 LSCC Methylation_Array tumor CPT0282910006 204367490066_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 3fd3a015-7cca-49e1-bdea-f012fb5448e2 07836d23702cff32e8381d7864e863ee {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.miRNA-Seq.A.hg38 C3L-05423 LSCC miRNA-Seq tissue_normal CPT0282940009 67ecec66-0c7f-4502-a7aa-e741905e25ee_mirnaseq_gdc_realn.bam 243275197 BAM harmonized CPTAC3 18cba86f-8020-4991-80b1-b17dfa90fe53 08f8a85307775e840b164695859a2aa1 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.miRNA-Seq.S15_L005_R1.A C3L-05423 LSCC miRNA-Seq tissue_normal CPT0282940009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGCTAC_S15_L005_R1_001.unaln.bam 220905639 BAM S15_L005_R1 submitted_unaligned CPTAC3 b4c29137-3e9c-480d-ac67-1092063ff911 9fe4dc20310d2a69b8c0ec2a571be166 {"aliquot_tag": "ALQ_d918327b", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.miRNA-Seq.S19_L006_R1.T C3L-05423 LSCC miRNA-Seq tumor CPT0282910009 200224_UNC31-K00269_0267_AHC722BBXY_GTGAAA_S19_L006_R1_001.unaln.bam 262297533 BAM S19_L006_R1 submitted_unaligned CPTAC3 1cc09d1a-848e-4eae-a5e1-65ec251dc813 0f4f5946a00e9c770266c5414b0ea3ed {"aliquot_tag": "ALQ_11f8bd0b", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.miRNA-Seq.T.hg38 C3L-05423 LSCC miRNA-Seq tumor CPT0282910009 24658a12-f698-4ee6-8f5c-234bf16a0d14_mirnaseq_gdc_realn.bam 282307073 BAM harmonized CPTAC3 6daf2460-533e-4da3-9fed-1d6954b3c4cc e5d11fe5c2d8a55cf1561d78e9166a21 {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.RNA-Seq.chimeric.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.chimeric.gdc_realn.bam 33811817 BAM chimeric harmonized CPTAC3 2c12b01d-1a8c-4c0a-9397-d04d2e740630 e6a64fdf07e2cc5b11c1ac27a2b07ca4 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.RNA-Seq.chimeric.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.chimeric.gdc_realn.bam 83999933 BAM chimeric harmonized CPTAC3 1924c79c-d271-4e64-9655-5f78b0e51390 7a24d53be35e0784a3593a4d5dcbd28e {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.RNA-Seq.genomic.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.genomic.gdc_realn.bam 8707607151 BAM genomic harmonized CPTAC3 9692e760-fe77-454e-a1f6-1c5b84d756ed 84b46a1c7cf066174426ed5724c401c4 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.RNA-Seq.genomic.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.genomic.gdc_realn.bam 9209438633 BAM genomic harmonized CPTAC3 5317b2df-411a-4c3d-95a9-34b570334044 c4193d5a75b9582248c3e1b2348b9747 {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.RNA-Seq.S11_L007_R1.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R1_001.fastq.gz 4415304198 FASTQ S11_L007_R1 submitted_unaligned CPTAC3 3b34808d-b27f-4482-a1ff-4d2e87b188b6 772f62b80e958d1798f37bf285b20d70 {"aliquot_tag": "ALQ_d918327b", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.RNA-Seq.S11_L007_R2.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R2_001.fastq.gz 4774818539 FASTQ S11_L007_R2 submitted_unaligned CPTAC3 81c7c5ab-c5e6-4df6-ae8e-fbefa9d7d1a0 afc7ea02ebf843b5bdea909cd6a89141 {"aliquot_tag": "ALQ_d918327b", "sample": "S11", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.RNA-Seq.S3_L001_R1.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R1_001.fastq.gz 4489332453 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 d0ac19b2-1a83-4bb5-970f-85d1c79c2624 d20247e8fe1b44f2977f38645238d67d {"aliquot_tag": "ALQ_11f8bd0b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.RNA-Seq.S3_L001_R2.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R2_001.fastq.gz 4942844948 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 c18b79e3-24ae-4e53-974e-2878757e4e00 16addfd396e311a877bb41b5ceb3ca75 {"aliquot_tag": "ALQ_11f8bd0b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.RNA-Seq.transcriptome.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.transcriptome.gdc_realn.bam 11141721613 BAM transcriptome harmonized CPTAC3 1d1380d4-f4f7-4454-8cdf-36794521909c 495282c8217cdd346e0526a6d01f9df3 {"aliquot_tag": "ALQ_d918327b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.RNA-Seq.transcriptome.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.transcriptome.gdc_realn.bam 11242863909 BAM transcriptome harmonized CPTAC3 31faa0cd-b25b-45b0-a432-e3846da4f56e 00c62cb140a366aac21a458700de21f1 {"aliquot_tag": "ALQ_11f8bd0b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.WGS.N C3L-05423 LSCC WGS blood_normal CPT0283050002 CPT0283050002.WholeGenome.RP-2158.bam 22150583479 BAM submitted_aligned CPTAC3 8eacf8d6-cb46-4406-b9d5-b5e1cb181811 17e947c7ccaa811c7ad179ce6ba13f7d {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05423.WGS.N.hg38 C3L-05423 LSCC WGS blood_normal CPT0283050002 473dfbc7-4094-4cb5-9f0e-152bdcc320d3_wgs_gdc_realn.bam 66453981376 BAM harmonized CPTAC3 2168c0d3-9223-43d5-8288-7580f45353be c0705eee3f92fa5d8689335ba767872e {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05423.WGS.T C3L-05423 LSCC WGS tumor CPT0282910006 CPT0282910006.WholeGenome.RP-2158.bam 24643260116 BAM submitted_aligned CPTAC3 897e4ec6-9dc6-40eb-90cb-369c300baa76 cf399450618b3cc855f2f47ce117a9eb {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.WGS.T.hg38 C3L-05423 LSCC WGS tumor CPT0282910006 8f8f8717-6151-4224-99ce-d7b74db7fe3e_wgs_gdc_realn.bam 74516106560 BAM harmonized CPTAC3 0ea222ee-5ab4-4e63-8bfa-71829ea50d62 1d671acddba64afda2f60482e636f23f {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.WXS.A C3L-05423 LSCC WXS tissue_normal CPT0282940006 CPT0282940006.WholeExome.RP-1303.bam 30693215316 BAM submitted_aligned CPTAC3 089c8215-8560-44a0-8b60-894e7a7bf15e 22f3672df89dd9bff6df3c20a54e7e02 {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.WXS.A.hg38 C3L-05423 LSCC WXS tissue_normal CPT0282940006 91602c8f-b28e-4150-8331-405284e3698b_wxs_gdc_realn.bam 42261598202 BAM harmonized CPTAC3 68440bdc-b72c-401d-8f9b-3d3cfbc4c374 ac55bae9a0fcd0e5bed8fe59bd5a0d09 {"aliquot_tag": "ALQ_49a72fea", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05423.WXS.N C3L-05423 LSCC WXS blood_normal CPT0283050002 CPT0283050002.WholeExome.RP-1303.bam 24460226474 BAM submitted_aligned CPTAC3 99bca1c2-26dd-4f6b-819d-4f74df6f3ae7 df467a62e5a32262850596986bdae55f {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05423.WXS.N.hg38 C3L-05423 LSCC WXS blood_normal CPT0283050002 473dfbc7-4094-4cb5-9f0e-152bdcc320d3_wxs_gdc_realn.bam 33415160294 BAM harmonized CPTAC3 d2d0dc18-4558-4422-820e-afdd32f6ce69 9055699c4002b4aca9c09ff7eda29f6b {"aliquot_tag": "ALQ_f2d2983f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05423.WXS.T C3L-05423 LSCC WXS tumor CPT0282910006 CPT0282910006.WholeExome.RP-1303.bam 20960949642 BAM submitted_aligned CPTAC3 a7ffe73a-d310-4fbc-8dec-eda3c02efa1d 29f235d9e7ed4a4a8fbd1c6658e56238 {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05423.WXS.T.hg38 C3L-05423 LSCC WXS tumor CPT0282910006 8f8f8717-6151-4224-99ce-d7b74db7fe3e_wxs_gdc_realn.bam 28753464387 BAM harmonized CPTAC3 5be1a3eb-0e8b-48a7-9c7c-3434ac189f80 150f249fe3af3a4e2d3d3fee0d21e556 {"aliquot_tag": "ALQ_8147a09a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.MethArray.Green.A C3L-05427 LSCC Methylation_Array tissue_normal CPT0284190006 204367470127_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 c59739c1-6d64-413d-9699-e9fc2c3e1396 49af47e58c45d899f47437ceec16ba92 {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.MethArray.Green.T C3L-05427 LSCC Methylation_Array tumor CPT0284130006 204372030090_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 c2390f3c-4ded-4677-9f15-8bb53e4d0908 f317ae41d32b4adf9870fc5c99b158dd {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.MethArray.Red.A C3L-05427 LSCC Methylation_Array tissue_normal CPT0284190006 204367470127_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 a6b80daa-77e3-4715-89ec-4ededde4a8e8 8362dafeb9ac056b26f469751ffce46c {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.MethArray.Red.T C3L-05427 LSCC Methylation_Array tumor CPT0284130006 204372030090_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 e8bc377d-ace0-4427-beea-c1646c1f8c91 2be81390ffb8f42e4c6d81dc10103f3c {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.miRNA-Seq.A.hg38 C3L-05427 LSCC miRNA-Seq tissue_normal CPT0284190009 0269e8d7-0019-49cd-944f-e1bf88b5db0d_mirnaseq_gdc_realn.bam 269402093 BAM harmonized CPTAC3 1c7b9c8a-c17d-4ba2-98a1-7d89a52159bd cb9144598f1086a9063b2a579af6314e {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.miRNA-Seq.S11_L005_R1.A C3L-05427 LSCC miRNA-Seq tissue_normal CPT0284190009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTTGTA_S11_L005_R1_001.unaln.bam 245084783 BAM S11_L005_R1 submitted_unaligned CPTAC3 b8cddc57-1064-405e-94bd-a09276462aa9 b876a4e8bddca377045ae35952cb1f36 {"aliquot_tag": "ALQ_ae0b419d", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.miRNA-Seq.S20_L006_R1.T C3L-05427 LSCC miRNA-Seq tumor CPT0284130009 200224_UNC31-K00269_0267_AHC722BBXY_GTGGCC_S20_L006_R1_001.unaln.bam 249618803 BAM S20_L006_R1 submitted_unaligned CPTAC3 a3bd39fa-7b10-4d61-a08f-d2417de4a5a5 6d02efd3363b303b1904456f866e26ee {"aliquot_tag": "ALQ_e4bb593c", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.miRNA-Seq.T.hg38 C3L-05427 LSCC miRNA-Seq tumor CPT0284130009 b8e972d6-c1a1-4e51-817e-3a7e59f61408_mirnaseq_gdc_realn.bam 272874656 BAM harmonized CPTAC3 d5fff9ef-452e-4c33-bc55-8e5862981b11 ad3c9d6597dcd9a518d8e11c104619ff {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.RNA-Seq.chimeric.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.chimeric.gdc_realn.bam 32473147 BAM chimeric harmonized CPTAC3 c272b879-482f-4358-979e-9e6cb1fdcc19 cdba34b3e1ff339432026437c49d9365 {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.RNA-Seq.chimeric.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.chimeric.gdc_realn.bam 41992246 BAM chimeric harmonized CPTAC3 0296d1a5-0eb8-4a7f-a0c7-bfb5e6cef506 4b0f43d2e7e53d20976daf250f3cb3b1 {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.RNA-Seq.genomic.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.genomic.gdc_realn.bam 8078941065 BAM genomic harmonized CPTAC3 53f2a33e-c003-42fa-a61e-632e2e532e88 619c7e3f6e09e815adbee89245a72633 {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.RNA-Seq.genomic.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.genomic.gdc_realn.bam 6879443317 BAM genomic harmonized CPTAC3 d1780a60-cc51-46a4-ba05-7fc5dc40e3a2 e321d257e9123a1475e21e57eea73580 {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.RNA-Seq.S12_L007_R1.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R1_001.fastq.gz 3970850364 FASTQ S12_L007_R1 submitted_unaligned CPTAC3 482b9386-177c-4b58-911b-71dcf0bc091e d5bcb11c75e7805eab47f8b377709f6b {"aliquot_tag": "ALQ_ae0b419d", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.RNA-Seq.S12_L007_R2.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R2_001.fastq.gz 4257470120 FASTQ S12_L007_R2 submitted_unaligned CPTAC3 05e7e5ac-bda1-4b39-9be2-13a7ed728760 35f96b78b2854625d31f132962e503f9 {"aliquot_tag": "ALQ_ae0b419d", "sample": "S12", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.RNA-Seq.S4_L001_R1.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R1_001.fastq.gz 3152343958 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 1e71dff6-a4f6-4b2f-997b-97333d743138 13b58788ddeaebf60f6560ff1d214f3b {"aliquot_tag": "ALQ_e4bb593c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.RNA-Seq.S4_L001_R2.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R2_001.fastq.gz 3502760688 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 0985bf86-4c08-4c25-b649-faf95cb52e85 c0652aec66606cc7e4f0f11ef16be5b7 {"aliquot_tag": "ALQ_e4bb593c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.RNA-Seq.transcriptome.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.transcriptome.gdc_realn.bam 9040150093 BAM transcriptome harmonized CPTAC3 d154d069-8347-4e30-b69f-e5a7c47eda5b 3b4567afc2340afe7ba92a43e5dc9d8f {"aliquot_tag": "ALQ_ae0b419d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.RNA-Seq.transcriptome.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.transcriptome.gdc_realn.bam 8537298565 BAM transcriptome harmonized CPTAC3 9e4e0a2c-e1fc-4e7c-b15f-381225f47e83 8c895a534f08ff3e2df649ebaf2da29a {"aliquot_tag": "ALQ_e4bb593c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.WGS.N C3L-05427 LSCC WGS blood_normal CPT0284290002 CPT0284290002.WholeGenome.RP-2158.bam 32294248540 BAM submitted_aligned CPTAC3 74d939ff-9663-4484-ab5d-b95e8af97548 c3847962e4f1417c6a4a014708c54bdb {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05427.WGS.N.hg38 C3L-05427 LSCC WGS blood_normal CPT0284290002 e5dcd75a-3cd2-41b2-8297-a1fce506b09a_wgs_gdc_realn.bam 96467113094 BAM harmonized CPTAC3 28017ff1-f4d8-485f-b4fd-a52523420749 ce00db170ed1c9f28e54d8452890e8d0 {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05427.WGS.T C3L-05427 LSCC WGS tumor CPT0284130006 CPT0284130006.WholeGenome.RP-2158.bam 31112324564 BAM submitted_aligned CPTAC3 a56bfc48-fb37-40a3-868d-e1ed0cb7b763 029a7667b029945119db5dd32355017b {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.WGS.T.hg38 C3L-05427 LSCC WGS tumor CPT0284130006 9a304621-e269-441a-97e1-ada9ebee23ab_wgs_gdc_realn.bam 90804062569 BAM harmonized CPTAC3 4329ac2a-b1af-4698-9bc5-8cf6776181b4 5833de3b1eb6d7ca6abce2b7ce4c04b9 {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.WXS.A C3L-05427 LSCC WXS tissue_normal CPT0284190006 CPT0284190006.WholeExome.RP-1303.bam 20287751058 BAM submitted_aligned CPTAC3 c2f9d846-ab71-4646-8b1f-75c2383861a7 51730ae31362f3be0f7f9cba32cb1b34 {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.WXS.A.hg38 C3L-05427 LSCC WXS tissue_normal CPT0284190006 e601381f-98e6-46dd-ac85-74872070c262_wxs_gdc_realn.bam 27398556566 BAM harmonized CPTAC3 a834306f-32fc-4eaf-8124-a89c6c95f161 017ce6c1cfaa5dc88ff0ab4adf5c0e62 {"aliquot_tag": "ALQ_3eb45c0c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05427.WXS.N C3L-05427 LSCC WXS blood_normal CPT0284290002 CPT0284290002.WholeExome.RP-1303.bam 23338885419 BAM submitted_aligned CPTAC3 584090ba-e625-49c7-80b1-5dd9e1efc009 658de42e80b3ec61c7e5c67bdf4d142b {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05427.WXS.N.hg38 C3L-05427 LSCC WXS blood_normal CPT0284290002 e5dcd75a-3cd2-41b2-8297-a1fce506b09a_wxs_gdc_realn.bam 32095146017 BAM harmonized CPTAC3 ccf61fe8-7e9e-4b2f-b66c-525a448b239a 44b23e475afab1730397e93f4072e255 {"aliquot_tag": "ALQ_bf4deabb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05427.WXS.T C3L-05427 LSCC WXS tumor CPT0284130006 CPT0284130006.WholeExome.RP-1303.bam 24334654519 BAM submitted_aligned CPTAC3 a7d58a6e-31c5-418d-bb3e-f2e58ab7e6b8 1cc632cfc4596f6bb9032d17c20e3df9 {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05427.WXS.T.hg38 C3L-05427 LSCC WXS tumor CPT0284130006 9a304621-e269-441a-97e1-ada9ebee23ab_wxs_gdc_realn.bam 34360457479 BAM harmonized CPTAC3 0d99b3c6-8607-4db4-809e-71d194603e86 78aef2f145b867c5a731726e7755d38b {"aliquot_tag": "ALQ_740444ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.MethArray.Green.A C3L-05428 LSCC Methylation_Array tissue_normal CPT0291840006 204372030013_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 7f1223e4-df6b-41c0-8b50-6c287bdbd0e1 f8073de43913de62f4165d0926cd6213 {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05428.MethArray.Green.T C3L-05428 LSCC Methylation_Array tumor CPT0291810006 204372030090_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f9818241-3052-4004-8169-2be2d184e809 91ba102dc02d52bb7dd623e89318cf8f {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.MethArray.Red.A C3L-05428 LSCC Methylation_Array tissue_normal CPT0291840006 204372030013_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 ec90d70d-9efc-488e-9ead-f67cf77edbb4 ffb48d1d0e85c44e5dc363afe7b1ec9e {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05428.MethArray.Red.T C3L-05428 LSCC Methylation_Array tumor CPT0291810006 204372030090_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 9458439d-314f-4510-8ff9-29361752a5ef d7034f5f394b96eb1e525115cbba6338 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.miRNA-Seq.S5_L001_R1.T C3L-05428 LSCC miRNA-Seq tumor CPT0291810009 200325_UNC31-K00269_0272_AHHC2NBBXY_CAACTA_S5_L001_R1_001.unaln.bam 267387157 BAM S5_L001_R1 submitted_unaligned CPTAC3 5c302e2a-c45b-4638-b95a-0c536c939b90 d4ac39d9ba14932e2b10ef1e46abea76 {"aliquot_tag": "ALQ_27e674ad", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.miRNA-Seq.T.hg38 C3L-05428 LSCC miRNA-Seq tumor CPT0291810009 84acd2a0-dc88-4125-b5ac-cb038ac723ea_mirnaseq_gdc_realn.bam 298961510 BAM harmonized CPTAC3 66e2fdad-5f58-4147-84de-3ca1cb8b9cd1 ba6519bb7c3d18680990e610586c2831 {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.RNA-Seq.chimeric.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.chimeric.gdc_realn.bam 101906890 BAM chimeric harmonized CPTAC3 9ccc4094-56fb-4642-b139-c1d580db126e 330818ee75818f1b496fc64a3ea5abcf {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.RNA-Seq.genomic.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.genomic.gdc_realn.bam 6991738707 BAM genomic harmonized CPTAC3 c3c2a753-89a2-44f2-b883-2225b5cd75df 9c8cd8b8e13c5c3dfbd20c07c0359492 {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.RNA-Seq.S13_L004_R1.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R1_001.fastq.gz 3442364882 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 5fabb5b3-0d33-4be8-92c3-d3239d33d978 73e5e1734fd71bce85adf761ac8bd02d {"aliquot_tag": "ALQ_27e674ad", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.RNA-Seq.S13_L004_R2.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R2_001.fastq.gz 3624151545 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 e5c5af32-42c1-4e4f-97f3-4bda6ed36973 4f2e492be320a4598ce0df0585fddff2 {"aliquot_tag": "ALQ_27e674ad", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.RNA-Seq.transcriptome.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.transcriptome.gdc_realn.bam 9711237027 BAM transcriptome harmonized CPTAC3 f39fd343-26c2-4d7b-a642-ae0c1b4fbefb 797130fad973f92ba217f6891d6e4089 {"aliquot_tag": "ALQ_27e674ad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.WGS.N C3L-05428 LSCC WGS blood_normal CPT0291940005 CPT0291940005.WholeGenome.RP-2158.bam 26713109649 BAM submitted_aligned CPTAC3 f858d924-8cfd-4b5e-8817-93efe7375be9 49ce2827bce31f04ce3aaf96f27864cc {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05428.WGS.N.hg38 C3L-05428 LSCC WGS blood_normal CPT0291940005 dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wgs_gdc_realn.bam 78704546334 BAM harmonized CPTAC3 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 284ce87e66a06080f97dbd32e0e6773e {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05428.WGS.T C3L-05428 LSCC WGS tumor CPT0291810006 CPT0291810006.WholeGenome.RP-2158.bam 24519926345 BAM submitted_aligned CPTAC3 b3c235ca-3f1c-4789-be85-a9d6cd5ada65 e51265c932893abf3901fffff6a1a925 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.WGS.T.hg38 C3L-05428 LSCC WGS tumor CPT0291810006 d15d106b-64ab-4e62-a0f3-dd22920946b7_wgs_gdc_realn.bam 71384825686 BAM harmonized CPTAC3 30a31e54-8637-431b-ad11-88efc4c79940 2602b01ea3e41a9720b5d3156c349d98 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.WXS.A C3L-05428 LSCC WXS tissue_normal CPT0291840006 CPT0291840006.WholeExome.RP-1303.bam 41017629080 BAM submitted_aligned CPTAC3 085e18c3-0d71-486f-b6d0-28838ac1ec99 5985041855e7cd48cd696d9bcf419b66 {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05428.WXS.A.hg38 C3L-05428 LSCC WXS tissue_normal CPT0291840006 3cf95cf1-d530-4e8f-8636-fc4c00544a79_wxs_gdc_realn.bam 57634535665 BAM harmonized CPTAC3 88cc923f-c526-4dbc-ad2e-5408417b84c6 3cd27c0639c8cd79cbb1cd90c1d5b668 {"aliquot_tag": "ALQ_7fb9e64c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05428.WXS.N C3L-05428 LSCC WXS blood_normal CPT0291940005 CPT0291940005.WholeExome.RP-1303.bam 19821060847 BAM submitted_aligned CPTAC3 e54401a7-aa02-4622-b779-42b358b01c34 4a9e14f66bf6119c504958cb4363e27d {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05428.WXS.N.hg38 C3L-05428 LSCC WXS blood_normal CPT0291940005 dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wxs_gdc_realn.bam 27128996700 BAM harmonized CPTAC3 e0e577de-1274-43bf-8429-4455a49bc8f0 0ba2ca5893c3718a5f77c9243bbd03ff {"aliquot_tag": "ALQ_2dec6453", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05428.WXS.T C3L-05428 LSCC WXS tumor CPT0291810006 CPT0291810006.WholeExome.RP-1303.bam 23608371967 BAM submitted_aligned CPTAC3 ac1ecbfd-471b-44a9-b30c-ffb502e82c03 1143dca543fa1105e2da62f32c6f87c6 {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05428.WXS.T.hg38 C3L-05428 LSCC WXS tumor CPT0291810006 d15d106b-64ab-4e62-a0f3-dd22920946b7_wxs_gdc_realn.bam 32513969425 BAM harmonized CPTAC3 4ee6dd42-2580-49b0-a029-87b4f04d337d c976bf22b578d9a424002323a8eb866c {"aliquot_tag": "ALQ_b759693c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05448.RNA-Seq.chimeric.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.chimeric.gdc_realn.bam 127241384 BAM chimeric harmonized CPTAC3 bf3e4910-87fe-4357-ace5-88c0874d8b8c 0ff2ee26980be380ef709a6ab286a466 {"aliquot_tag": "ALQ_877ef843", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05448.RNA-Seq.genomic.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.genomic.gdc_realn.bam 7433271618 BAM genomic harmonized CPTAC3 c18423d5-5414-4662-902f-0de7a163f3b9 649c045598cf471e85625711f00cff26 {"aliquot_tag": "ALQ_877ef843", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05448.RNA-Seq.S63_R1.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R1_001.fastq.gz 4572720057 FASTQ S63_R1 submitted_unaligned CPTAC3 5e9ab5e9-a634-4d07-824b-f4e8ee9d6c48 25d6576979814018ff01197b65541216 {"aliquot_tag": "ALQ_877ef843", "sample": "S63", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05448.RNA-Seq.S63_R2.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R2_001.fastq.gz 4726951635 FASTQ S63_R2 submitted_unaligned CPTAC3 8bafe422-0f9f-4758-a7b8-a6c209c556bc e0263cc9db7904c3321e32d10269d5b3 {"aliquot_tag": "ALQ_877ef843", "sample": "S63", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05448.RNA-Seq.transcriptome.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.transcriptome.gdc_realn.bam 4885048779 BAM transcriptome harmonized CPTAC3 7ff9fdb1-5576-40f1-80a4-d7bfad77905e eb3fc895ecd2141d2b491ab64efac047 {"aliquot_tag": "ALQ_877ef843", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05459.RNA-Seq.chimeric.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.chimeric.gdc_realn.bam 121584478 BAM chimeric harmonized CPTAC3 cb11b0c4-4986-4f17-ae21-65d7c1757042 b66d2bfd2df8cd2afc6ef9f5e1cc4bde {"aliquot_tag": "ALQ_355e2453", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05459.RNA-Seq.genomic.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.genomic.gdc_realn.bam 6283609377 BAM genomic harmonized CPTAC3 0f613a46-93b2-4a75-82d8-12e34fa2f1db 59346724db0ce30bfa843a2db9958932 {"aliquot_tag": "ALQ_355e2453", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05459.RNA-Seq.S86_R1.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R1_001.fastq.gz 3492491548 FASTQ S86_R1 submitted_unaligned CPTAC3 0fd059e0-8cd2-4805-b894-e168b8a80c03 26e4a50cde3e13b05cd9ac4e7b996249 {"aliquot_tag": "ALQ_355e2453", "sample": "S86", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05459.RNA-Seq.S86_R2.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R2_001.fastq.gz 3621749148 FASTQ S86_R2 submitted_unaligned CPTAC3 160145eb-2e8c-497f-9985-4563f5193f36 82dc3b8a4116f5b2ae936df5301a98e7 {"aliquot_tag": "ALQ_355e2453", "sample": "S86", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05459.RNA-Seq.transcriptome.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.transcriptome.gdc_realn.bam 3252015206 BAM transcriptome harmonized CPTAC3 845772a1-3c26-4c8b-8acc-6a7b85a89375 15918b9107092f18a716409edeec1839 {"aliquot_tag": "ALQ_355e2453", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05465.RNA-Seq.chimeric.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.chimeric.gdc_realn.bam 132294776 BAM chimeric harmonized CPTAC3 2ecd3291-44d1-45f7-b1c4-bcd72f4a5289 34061b33d3116dd622705deaf33f97e8 {"aliquot_tag": "ALQ_71420256", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05465.RNA-Seq.genomic.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.genomic.gdc_realn.bam 6302744426 BAM genomic harmonized CPTAC3 a98e3073-584c-492a-9a50-91beef6768f5 d64dcaac21f3591c708c65423fffac62 {"aliquot_tag": "ALQ_71420256", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05465.RNA-Seq.S4_R1.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R1_001.fastq.gz 3613717401 FASTQ S4_R1 submitted_unaligned CPTAC3 6739f032-f05a-480d-b1d0-fced61f3632d 8afb91abe549d0af7e1d6b48412fbbd4 {"aliquot_tag": "ALQ_71420256", "sample": "S4", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05465.RNA-Seq.S4_R2.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R2_001.fastq.gz 3694903230 FASTQ S4_R2 submitted_unaligned CPTAC3 3150177d-8dd0-46f7-ab8c-66b5510430ed dc63f3f26ab929bf9a805c5731d03ea8 {"aliquot_tag": "ALQ_71420256", "sample": "S4", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05465.RNA-Seq.transcriptome.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.transcriptome.gdc_realn.bam 3552076423 BAM transcriptome harmonized CPTAC3 268c58c7-b05c-404c-8d2c-6d6544297bdc 8b0c8ac4a5a458e7dd9062110228d162 {"aliquot_tag": "ALQ_71420256", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.MethArray.Green.T C3L-05481 GBM Methylation_Array tumor CPT0406370007 205555380136_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b274228f-a33a-4fb8-be3d-4347e24c4b4e 225bc30691593a737d6c98434d1b23e1 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.MethArray.Red.T C3L-05481 GBM Methylation_Array tumor CPT0406370007 205555380136_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 b7cc2ed3-f7c8-4d53-9333-a4b3ae5995fe 0f7794d81e119ed0faf6458d6f782d13 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.miRNA-Seq.S15_L005_R1.T C3L-05481 GBM miRNA-Seq tumor CPT0406370010 210702_UNC32-K00270_0289_AHKJ22BBXY_GTCCGC_S15_L005_R1_001.unaln.bam 264616979 BAM S15_L005_R1 submitted_unaligned CPTAC3 4f47ee8c-81de-4193-b564-8f30527bde03 bd7c43b58fe85ba387cab46d6dc954fc {"aliquot_tag": "ALQ_b54a404", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.miRNA-Seq.T.hg38 C3L-05481 GBM miRNA-Seq tumor CPT0406370010 beb1e815-10d6-4145-a590-b0bac3262df0_mirnaseq_gdc_realn.bam 301592256 BAM harmonized CPTAC3 be6181ff-2781-441f-94da-d9b4b4d648b7 bcd3ad9dab57609864be130c6e2d45bd {"aliquot_tag": "ALQ_b54a404", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.REP_c39601d.miRNA-Seq.S1_L001_R1.T C3L-05481 GBM miRNA-Seq tumor CPT0406370014 CPT3_06548_V0043_CACCGG_S1_L001_R1_001.unaln.bam 413940848 BAM S1_L001_R1 submitted_unaligned CPTAC3 05af431a-cc4d-4fa4-9bdd-89c9d383c814 5d5b17d719a34b6fb2bc9e0dee77229f {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.REP_c39601d.miRNA-Seq.T.hg38 C3L-05481 GBM miRNA-Seq tumor CPT0406370014 207ea4f5-3879-4020-a97a-74c878ab4b97_mirnaseq_gdc_realn.bam 442930900 BAM harmonized CPTAC3 174e4802-6ddb-4836-90e7-1c058cf33a09 8cc0120124a1a575cedb352c1f6d6407 {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.REP_c39601d.RNA-Seq.chimeric.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.chimeric.gdc_realn.bam 77563686 BAM chimeric harmonized CPTAC3 e7ab2665-128f-4c63-9a08-44df946182c0 d0d4670ae1270f857e04a8bfc63c5e32 {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.REP_c39601d.RNA-Seq.genomic.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.genomic.gdc_realn.bam 10592084573 BAM genomic harmonized CPTAC3 2082ee2c-ae10-4125-ad40-a9543b528a1b 750c71c5e16ba369d476fdd671b12a7a {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.REP_c39601d.RNA-Seq.S22_L008_R1.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R1_001.fastq.gz 5087451384 FASTQ S22_L008_R1 submitted_unaligned CPTAC3 3943d597-a775-439b-a983-db12f9b0ec2d 9ae0e4aeafca73fde582263acb70f39d {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.REP_c39601d.RNA-Seq.S22_L008_R2.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R2_001.fastq.gz 5149213973 FASTQ S22_L008_R2 submitted_unaligned CPTAC3 23eac32e-93a9-48a9-8cfd-f14448fb7fd5 35aa154ddbc3e6868b5f26f15f7e664f {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.REP_c39601d.RNA-Seq.transcriptome.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.transcriptome.gdc_realn.bam 12581250677 BAM transcriptome harmonized CPTAC3 8e8438ad-e850-482a-9906-2709d8470ee7 5b190f2c0b46e370b832941aa6593c27 {"aliquot_tag": "REP_c39601d", "aliquot_annotation": "Duplicate item: Replacement RNA aliquot per UNC request", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.WGS.N C3L-05481 GBM WGS blood_normal CPT0402530002 CPT0402530002.WholeGenome.RP-2158.bam 29970507182 BAM submitted_aligned CPTAC3 bb8107e4-5d08-4ec2-864c-ef43b68e9592 c971d6cb2c361e6c02ff0643fde6b224 {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05481.WGS.N.hg38 C3L-05481 GBM WGS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wgs_gdc_realn.bam 85653132726 BAM harmonized CPTAC3 299c23c9-022e-44e9-82fd-c42f53062863 ba393e5c4b564b287696738dab22fe0a {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05481.WGS.T C3L-05481 GBM WGS tumor CPT0406370007 CPT0406370007.WholeGenome.RP-2158.bam 26730645651 BAM submitted_aligned CPTAC3 877bc903-d839-4593-9bda-139d1e265cd6 cfa533343db9a20296ffa876780aa333 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.WGS.T.hg38 C3L-05481 GBM WGS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wgs_gdc_realn.bam 78487180893 BAM harmonized CPTAC3 7e51a55c-1945-4568-9355-6f037446733b 4d057f020233743d85f33cbc6cb94fc4 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.WXS.N C3L-05481 GBM WXS blood_normal CPT0402530002 CPT0402530002.WholeExome.RP-1303.bam 25763962021 BAM submitted_aligned CPTAC3 e1266ab9-bddb-4450-a91c-99bef557e50c 9d57faa9638e8f0ee960aa1744bdb419 {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05481.WXS.N.hg38 C3L-05481 GBM WXS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wxs_gdc_realn.bam 35734641239 BAM harmonized CPTAC3 c951e25c-569b-4330-9f20-c9cf57eb8291 63a915287afce5cc7c954209ccb0e937 {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-05481.WXS.T C3L-05481 GBM WXS tumor CPT0406370007 CPT0406370007.WholeExome.RP-1303.bam 22329938537 BAM submitted_aligned CPTAC3 3d539fca-80f3-44fa-8984-c29a9b1eb26f fc5df7ed9642071d1df3a6696dbd1ecc {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05481.WXS.T.hg38 C3L-05481 GBM WXS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wxs_gdc_realn.bam 30699521739 BAM harmonized CPTAC3 e6b33d67-a8b0-42ce-8994-6e3e5e782da4 8414079d0f7b780a474c3e6ddc35fd21 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-05571.MethArray.Green.T C3L-05571 UCEC Methylation_Array tumor CPT0275270009 204372030024_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 94b106fb-b0c9-4e73-917f-f9792591e6ec d6ed0930b2680bf5233e71cd3ebd4d1e {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.MethArray.Red.T C3L-05571 UCEC Methylation_Array tumor CPT0275270009 204372030024_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 7ef175a4-38e0-46ab-8634-93b3c4926cbc 3e030b20324cb1f88c2a3750d2421bdb {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.miRNA-Seq.S41_L008_R1.T C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 200513_UNC31-K00269_0278_BHH7Y7BBXY_GACGAC_S41_L008_R1_001.unaln.bam 252365298 BAM S41_L008_R1 submitted_unaligned CPTAC3 68c3bd9e-8acb-4f9f-976e-f7f1bf8ac0ae 1c23c36fb9b06a8aa42e4c82cf7ed060 {"aliquot_tag": "ALQ_784789db", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.miRNA-Seq.T.hg38 C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 4d4fc8c8-6fcf-43c1-949c-8efc153cd3cc_mirnaseq_gdc_realn.bam 277898639 BAM harmonized CPTAC3 e3dbc3e5-624a-408e-84fc-7246980d86e6 1d74fae8408096b00aa52e1dec0937cf {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.chimeric.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.chimeric.gdc_realn.bam 31372704 BAM chimeric harmonized CPTAC3 59baf4c0-b84c-4982-8741-35f9bd287501 210cc55eb410e3bbcb95b4f48d83cdf2 {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.chimeric.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.chimeric.gdc_realn.bam 275239026 BAM chimeric harmonized CPTAC3 e4a0a1d9-9c88-4829-a210-9441b20f3af9 2b5f264deac1155c6791a50fd6d16aaf {"aliquot_tag": "ALQ_85487430", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.genomic.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.genomic.gdc_realn.bam 7201732289 BAM genomic harmonized CPTAC3 d65e77a6-0a45-45ff-8f9d-fb0587bacb79 6b55b67ba4187a9dd0108fd959cb03bd {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.genomic.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.genomic.gdc_realn.bam 11480968788 BAM genomic harmonized CPTAC3 33358c41-a242-4b2d-9708-2fcf511319db 724812968ea3449f368b783132a6022a {"aliquot_tag": "ALQ_85487430", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.S68_L008_R1.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R1_001.fastq.gz 3538685411 FASTQ S68_L008_R1 submitted_unaligned CPTAC3 81f527a8-8a38-474b-a8e7-fd70b107bfc4 e7fa4f00a627383f222ebbaeefae034e {"aliquot_tag": "ALQ_784789db", "sample": "S68", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.S68_L008_R2.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R2_001.fastq.gz 3740963385 FASTQ S68_L008_R2 submitted_unaligned CPTAC3 9ee12b8b-d9df-4948-80c5-cc88369fd22f 9cb9a7315c51c7d088f507b8e0c3834a {"aliquot_tag": "ALQ_784789db", "sample": "S68", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.S82_R1.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R1_001.fastq.gz 6462107526 FASTQ S82_R1 submitted_unaligned CPTAC3 f995e15d-bf67-4679-a6f6-0aa8a4af1593 d0157e053b11ab4eeee125c00a94407d {"aliquot_tag": "ALQ_85487430", "sample": "S82", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.S82_R2.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R2_001.fastq.gz 6578949131 FASTQ S82_R2 submitted_unaligned CPTAC3 5fddbe95-7779-4c60-9511-8268a891232b c99733a7a8cc1f3fd4af06158b4a7679 {"aliquot_tag": "ALQ_85487430", "sample": "S82", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.transcriptome.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.transcriptome.gdc_realn.bam 8480167613 BAM transcriptome harmonized CPTAC3 39fde842-7f5e-4555-bfff-e2ab4d1075b1 4af383e5c6874e353734b4c6be834bd7 {"aliquot_tag": "ALQ_784789db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.RNA-Seq.transcriptome.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.transcriptome.gdc_realn.bam 7631895360 BAM transcriptome harmonized CPTAC3 68be3b22-0571-48fc-8422-1b2c8549c2d8 37ec67b31f201ecc02662b9421a32d81 {"aliquot_tag": "ALQ_85487430", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.WGS.N C3L-05571 UCEC WGS blood_normal CPT0273520002 CPT0273520002.WholeGenome.RP-2158.bam 25405372434 BAM submitted_aligned CPTAC3 76a015af-21d8-4fac-814f-82ab77d46413 c39376f063dae6ab7f3750335eaf1d4a {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05571.WGS.N.hg38 C3L-05571 UCEC WGS blood_normal CPT0273520002 2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wgs_gdc_realn.bam 72991842163 BAM harmonized CPTAC3 04fe5225-2758-4691-b709-934aa7656050 04eda63fbb1eb1e66d7ed63b3a4a93f0 {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05571.WGS.T C3L-05571 UCEC WGS tumor CPT0275270009 CPT0275270009.WholeGenome.RP-2158.bam 25934538376 BAM submitted_aligned CPTAC3 55d91490-d181-4c83-a94f-2738bb68cc17 4ec1624d6c4a0e4a51b2df67e7bab03d {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.WGS.T.hg38 C3L-05571 UCEC WGS tumor CPT0275270009 63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wgs_gdc_realn.bam 76185528314 BAM harmonized CPTAC3 0a1d1971-388c-472e-a6ac-c3608817ee7d c25ebbdffc502d7918284784112aaf03 {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.WXS.N C3L-05571 UCEC WXS blood_normal CPT0273520002 CPT0273520002.WholeExome.RP-1303.bam 20950292307 BAM submitted_aligned CPTAC3 395be3f7-e961-4046-9d16-7fad53804df5 8047280f8c519f485ff98fb746c892d6 {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05571.WXS.N.hg38 C3L-05571 UCEC WXS blood_normal CPT0273520002 2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wxs_gdc_realn.bam 28958627758 BAM harmonized CPTAC3 fa70a90c-6154-4ebb-ab94-a38428f80e4c f3a0d1315bc4d0daa0279fbcbf968146 {"aliquot_tag": "ALQ_c91fc730", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05571.WXS.T C3L-05571 UCEC WXS tumor CPT0275270009 CPT0275270009.WholeExome.RP-1303.bam 20077678617 BAM submitted_aligned CPTAC3 8f9927db-71ec-4605-a7e3-fe7f77aa1437 8742ce9e6ec204e90056444fc7a561c9 {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05571.WXS.T.hg38 C3L-05571 UCEC WXS tumor CPT0275270009 63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wxs_gdc_realn.bam 28738175289 BAM harmonized CPTAC3 695ec101-5ecd-4552-ac22-a9b18ad41145 038874629eb81b3d6eaa935444dcc66e {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05574.RNA-Seq.chimeric.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.chimeric.gdc_realn.bam 295797938 BAM chimeric harmonized CPTAC3 c85623bb-820c-46eb-ae98-610bc798105b 656f903838ec80c10780d2a54a42c05d {"aliquot_tag": "ALQ_c62ceb9f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05574.RNA-Seq.genomic.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.genomic.gdc_realn.bam 13984956492 BAM genomic harmonized CPTAC3 f3d026dc-348d-4996-8f9c-2d6e3061c951 163fbb36e69e3c42e031201a5df9b76b {"aliquot_tag": "ALQ_c62ceb9f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05574.RNA-Seq.S55_R1.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R1_001.fastq.gz 8967582982 FASTQ S55_R1 submitted_unaligned CPTAC3 d22359eb-1963-4331-ac8e-5bfe21da379a 5a5189070c658feb4331aa6946b85df3 {"aliquot_tag": "ALQ_c62ceb9f", "sample": "S55", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05574.RNA-Seq.S55_R2.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R2_001.fastq.gz 9279915842 FASTQ S55_R2 submitted_unaligned CPTAC3 0824ef96-da24-4447-b004-870d0a8f0e09 0affd61dd280a8e64422140fa56c3111 {"aliquot_tag": "ALQ_c62ceb9f", "sample": "S55", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05574.RNA-Seq.transcriptome.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.transcriptome.gdc_realn.bam 8225640220 BAM transcriptome harmonized CPTAC3 314721fd-f0f0-48d0-abec-cd2871e4d2e3 133fbd299be3ec224d9e39901eae52a6 {"aliquot_tag": "ALQ_c62ceb9f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05678.MethArray.Green.Tpb C3L-05678 AML Methylation_Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e984db26-9ec3-4b95-8958-f3cb8df408e1 80c99d6c79ae49ac209c379908874e17 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.MethArray.Red.Tpb C3L-05678 AML Methylation_Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 c8466f3f-4fb5-4e14-aa20-4861d84fd222 0e36cd84b9481a8ea5e2544006c2763c {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.miRNA-Seq.S18_L001_R1.Tpb C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L001_R1_001.unaln.bam 274806128 BAM S18_L001_R1 submitted_unaligned CPTAC3 b1136002-c557-45e4-81a2-9faf732a1046 9dcb236863d2102319af1a2bafa8c6cc {"aliquot_tag": "ALQ_3df145b8", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.miRNA-Seq.Tpb.hg38 C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 f639b523-173f-4dd9-b3d9-043e100eb72b_mirnaseq_gdc_realn.bam 300837228 BAM harmonized CPTAC3 2400d97f-36e5-4da0-a084-ed535fe38eec 50f78620783a3a50e46ce436ee41b906 {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.RNA-Seq.chimeric.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.chimeric.gdc_realn.bam 690338673 BAM chimeric harmonized CPTAC3 a1eb0896-ea46-431b-b682-c8f1ebd29607 6bf541e97651e4ebc2f401985e9ad360 {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.RNA-Seq.genomic.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.genomic.gdc_realn.bam 8240761627 BAM genomic harmonized CPTAC3 c16b1fb4-e579-48d7-8fbb-e73ad186cc01 ecacc8570fc5c2cdd19f059d68cb9d1f {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.RNA-Seq.S23_L006_R1.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3989940556 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 45e5054f-8448-4886-81a1-e3f10f0e9655 1fda4b8646b4fdc8bcfe1bc107254093 {"aliquot_tag": "ALQ_3df145b8", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.RNA-Seq.S23_L006_R2.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4326609003 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 bb536e99-1c65-411e-8e81-25175f6e5b5e b0dcded2ae560d618ef2c4f0dfbcd7a1 {"aliquot_tag": "ALQ_3df145b8", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.RNA-Seq.transcriptome.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.transcriptome.gdc_realn.bam 10180626358 BAM transcriptome harmonized CPTAC3 fab11fef-09b8-4fc1-8e87-be3572f2126d a4f93934d90ae42815ef7bd08b1756da {"aliquot_tag": "ALQ_3df145b8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.WGS.Nbc C3L-05678 AML WGS buccal_normal CPT0322820003 CPT0322820003.WholeGenome.RP-2158.bam 37551610573 BAM submitted_aligned CPTAC3 19ea11be-1597-4b4f-b0c8-0a895330b91b 9a28404cb857ff728b12da696a0e9b2a {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05678.WGS.Nbc.hg38 C3L-05678 AML WGS buccal_normal CPT0322820003 1e4181e8-2336-4118-b562-34e9dcd705c4_wgs_gdc_realn.bam 108424647124 BAM harmonized CPTAC3 42c8a39f-c216-4b9b-9397-0e17f6c3787f 96154389d76439cf179000af4c4a7bcc {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05678.WGS.Tpb C3L-05678 AML WGS tumor_peripheral_blood CPT0322890002 CPT0322890002.WholeGenome.RP-2158.bam 50765855054 BAM submitted_aligned CPTAC3 dbfba298-1cb2-4177-96e4-abf3fdc9cef9 7e788f86bdd848fcae8c71dd199ce0a0 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.WGS.Tpb.hg38 C3L-05678 AML WGS tumor_peripheral_blood CPT0322890002 45aba417-f9a2-4ff1-9f61-773f71e6f49d_wgs_gdc_realn.bam 145743222871 BAM harmonized CPTAC3 c9e37e32-d97e-4d6d-8ea9-843141103d21 b5587bdf192159434d08a7b805f378cd {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.WXS.Nbc C3L-05678 AML WXS buccal_normal CPT0322820003 CPT0322820003.WholeExome.RP-1303.bam 29575006880 BAM submitted_aligned CPTAC3 092e9b56-5df1-4fd9-9335-41e7310494a4 66182043d961504a2f86a3f8f5265669 {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05678.WXS.Nbc.hg38 C3L-05678 AML WXS buccal_normal CPT0322820003 1e4181e8-2336-4118-b562-34e9dcd705c4_wxs_gdc_realn.bam 40708797118 BAM harmonized CPTAC3 4a8cee33-0834-4a02-a43e-f3283b5334ec ab37797f32cf0391003eebf33d20f9e9 {"aliquot_tag": "ALQ_fb6af5eb", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05678.WXS.Tpb C3L-05678 AML WXS tumor_peripheral_blood CPT0322890002 CPT0322890002.WholeExome.RP-1303.bam 19733411791 BAM submitted_aligned CPTAC3 95de5148-16e1-466f-a70d-18ae84888ed9 c61c5f436523ca70675a193700b76684 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05678.WXS.Tpb.hg38 C3L-05678 AML WXS tumor_peripheral_blood CPT0322890002 45aba417-f9a2-4ff1-9f61-773f71e6f49d_wxs_gdc_realn.bam 27372352224 BAM harmonized CPTAC3 cda1c1e0-3597-466d-9622-696ac0051602 badfd4cd79bae120b9dfab83fbd9ffe0 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05693.MethArray.Green.A C3L-05693 LSCC Methylation_Array tissue_normal CPT0284550006 204367490030_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9d3d131f-4256-4ff0-91c0-c4407cbbf318 277fe3cc547cbb5a9591a11dbb7d9685 {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.MethArray.Green.T C3L-05693 LSCC Methylation_Array tumor CPT0284540006 204372030139_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e84337d9-8ec1-4f41-b470-a17fe1e88e7f 9c32bfb886d93a8247e1230fcd570a36 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.MethArray.Red.A C3L-05693 LSCC Methylation_Array tissue_normal CPT0284550006 204367490030_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 ac3a8f4b-08a0-49ff-bdcb-06e712ea0447 dd8183f80aceca2d2f620516f6c458df {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.MethArray.Red.T C3L-05693 LSCC Methylation_Array tumor CPT0284540006 204372030139_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 1e3e0991-ad53-4f63-aae2-a52f66ca8051 884859ca3fc3a9cd844a9b5f930f5fcc {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.miRNA-Seq.A.hg38 C3L-05693 LSCC miRNA-Seq tissue_normal CPT0284550009 3fa78d4c-98cc-4a62-8c89-7c3ddd1b357c_mirnaseq_gdc_realn.bam 281220743 BAM harmonized CPTAC3 b302bb62-00ef-4705-bcc1-8f51b08efc43 9ab73f5e6d37e6599eb462f5c835b167 {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.miRNA-Seq.S34_L007_R1.T C3L-05693 LSCC miRNA-Seq tumor CPT0284540009 200224_UNC31-K00269_0267_AHC722BBXY_CATGGC_S34_L007_R1_001.unaln.bam 204402100 BAM S34_L007_R1 submitted_unaligned CPTAC3 8e258968-f076-44f4-899f-0578ade428b1 4a5cb6587b60da98e9d3beec350382ec {"aliquot_tag": "ALQ_cd0ac73a", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.miRNA-Seq.S7_L005_R1.A C3L-05693 LSCC miRNA-Seq tissue_normal CPT0284550009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAGATC_S7_L005_R1_001.unaln.bam 256275635 BAM S7_L005_R1 submitted_unaligned CPTAC3 30403d01-d93a-47b5-94a4-c5d8afbc1b11 620650e379e1a07565ae8c67f0ef02eb {"aliquot_tag": "ALQ_f06aee8a", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.miRNA-Seq.T.hg38 C3L-05693 LSCC miRNA-Seq tumor CPT0284540009 98b48f0e-f2aa-43c3-a71e-6ec7f41e6522_mirnaseq_gdc_realn.bam 225150733 BAM harmonized CPTAC3 0b139a09-16d8-457d-950c-34b4a9c69f20 93bdbfe79e5cb0490ecf963e1a802a26 {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.RNA-Seq.chimeric.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.chimeric.gdc_realn.bam 32660251 BAM chimeric harmonized CPTAC3 6a01110f-344c-4658-a4a9-8b7eb1789169 020d4c35fabdb07238c249299c11b38d {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.RNA-Seq.chimeric.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.chimeric.gdc_realn.bam 46387626 BAM chimeric harmonized CPTAC3 f195a644-ad9c-4c9c-bcae-fd15f2489712 31a88bae0d0e6a85fe8ae59cfa2e828b {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.RNA-Seq.genomic.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.genomic.gdc_realn.bam 7984122977 BAM genomic harmonized CPTAC3 15dc43a9-5f61-4034-b961-ebb5cf728615 bd03615914b258c572f998d65b9b18f8 {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.RNA-Seq.genomic.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.genomic.gdc_realn.bam 10643167533 BAM genomic harmonized CPTAC3 14298e9d-e32c-4ae5-94e1-1b5fd3645a76 e5ff159a19f072de81e08054c6550f6b {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.RNA-Seq.S2_L001_R1.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 5135433715 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 72528177-da54-44e1-9b6d-3461942f09a3 697b17a8253cb873741c675b1b694011 {"aliquot_tag": "ALQ_cd0ac73a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.RNA-Seq.S2_L001_R2.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 5795875630 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 fa73de66-06cd-4ffb-8d4e-a8bc87ac14db a4c0f2d1219e914638374725cbf49327 {"aliquot_tag": "ALQ_cd0ac73a", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.RNA-Seq.S7_L006_R1.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R1_001.fastq.gz 4007300060 FASTQ S7_L006_R1 submitted_unaligned CPTAC3 41d75bd4-c284-404f-9997-d77ab8824fde ef1e903535526ab7625e66824ebd3e36 {"aliquot_tag": "ALQ_f06aee8a", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.RNA-Seq.S7_L006_R2.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R2_001.fastq.gz 4306863459 FASTQ S7_L006_R2 submitted_unaligned CPTAC3 7e52534b-ef33-46e8-938e-4141a128b64d f1e048da2b169e544f4c8390176cbe56 {"aliquot_tag": "ALQ_f06aee8a", "sample": "S7", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.RNA-Seq.transcriptome.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.transcriptome.gdc_realn.bam 9929244537 BAM transcriptome harmonized CPTAC3 c6f902e0-34a1-484f-98cc-ae8b8c1f07ea 7bcad702f9144ff84658c0108bd41320 {"aliquot_tag": "ALQ_f06aee8a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.RNA-Seq.transcriptome.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.transcriptome.gdc_realn.bam 14189626753 BAM transcriptome harmonized CPTAC3 1d1389d7-1bf4-4077-a982-9b8e2b7df0de c65c9384d407e0636059f959b31f200a {"aliquot_tag": "ALQ_cd0ac73a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.WGS.N C3L-05693 LSCC WGS blood_normal CPT0285840002 CPT0285840002.WholeGenome.RP-2158.bam 22708174541 BAM submitted_aligned CPTAC3 28f3e606-589c-40a5-a74d-0e40c054d11c 9e6f59b2332a465e3ec24b74b01d7af8 {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05693.WGS.N.hg38 C3L-05693 LSCC WGS blood_normal CPT0285840002 75cf68ed-fd4e-4592-b25c-85c9263a2adb_wgs_gdc_realn.bam 66841189471 BAM harmonized CPTAC3 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 1ed33fd0af00da6317b9cb9cb8115540 {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05693.WGS.T C3L-05693 LSCC WGS tumor CPT0284540006 CPT0284540006.WholeGenome.RP-2158.bam 22594747192 BAM submitted_aligned CPTAC3 37c561fd-6a83-419b-81cd-1832e1a8195e 1bfbc220f37c4e552fa7add212955de8 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.WGS.T.hg38 C3L-05693 LSCC WGS tumor CPT0284540006 7fde45f8-250d-45d1-827c-9f5313c7e614_wgs_gdc_realn.bam 63760329856 BAM harmonized CPTAC3 86f6ff64-28d1-4a9a-a636-7510c36b6fca 787407892ac61cba3b6983facf38a2d4 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.WXS.A C3L-05693 LSCC WXS tissue_normal CPT0284550006 CPT0284550006.WholeExome.RP-1303.bam 27792646981 BAM submitted_aligned CPTAC3 c0b47db4-4092-40a7-b001-b60b03ab8ea3 ecda53efeb376d52886528304fd8a3e3 {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.WXS.A.hg38 C3L-05693 LSCC WXS tissue_normal CPT0284550006 875435ae-1b7c-4aa4-9477-e46fb3dd7dc9_wxs_gdc_realn.bam 37622428460 BAM harmonized CPTAC3 4b8008c6-0d1b-4c2b-b523-c9349eeba536 f1e6ec86377f49e46ee604cf959e2905 {"aliquot_tag": "ALQ_60d5f31b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05693.WXS.N C3L-05693 LSCC WXS blood_normal CPT0285840002 CPT0285840002.WholeExome.RP-1303.bam 27629240514 BAM submitted_aligned CPTAC3 bc520d29-d5bd-4a67-900a-f4390d2b2a64 3a58e2a2cd700f2eca9115d04ef3f2e3 {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05693.WXS.N.hg38 C3L-05693 LSCC WXS blood_normal CPT0285840002 75cf68ed-fd4e-4592-b25c-85c9263a2adb_wxs_gdc_realn.bam 37769208291 BAM harmonized CPTAC3 935ee27e-bb7f-4ba8-99b9-0fcfd5a0c65a 06f99a81b6a4bacbc157e12df6ca972b {"aliquot_tag": "ALQ_403106d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05693.WXS.T C3L-05693 LSCC WXS tumor CPT0284540006 CPT0284540006.WholeExome.RP-1303.bam 20527228697 BAM submitted_aligned CPTAC3 502c3c14-0dfd-4475-bb7e-e577a1d1fd54 e7e48e2db9f44f133c136524e17cb436 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05693.WXS.T.hg38 C3L-05693 LSCC WXS tumor CPT0284540006 7fde45f8-250d-45d1-827c-9f5313c7e614_wxs_gdc_realn.bam 28036240362 BAM harmonized CPTAC3 d5ac75aa-2173-40ba-aa89-0fc2ab777da8 51bb5054b93678173cdbe41572f1cad3 {"aliquot_tag": "ALQ_5db5daab", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05719.RNA-Seq.chimeric.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.chimeric.gdc_realn.bam 167330578 BAM chimeric harmonized CPTAC3 00070528-9440-4790-b35b-af5328ae624f 3d4214d3047e95205a717ac47362887b {"aliquot_tag": "ALQ_c146a35f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05719.RNA-Seq.genomic.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.genomic.gdc_realn.bam 11377449704 BAM genomic harmonized CPTAC3 df662ce8-ffaf-4231-8ebd-beb12fa901e8 5a9d1b3fca660311a8b6142a0132a294 {"aliquot_tag": "ALQ_c146a35f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05719.RNA-Seq.S84_R1.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R1_001.fastq.gz 5598981880 FASTQ S84_R1 submitted_unaligned CPTAC3 a23e02d5-cd7a-4771-977c-51c715534f71 e83c90e5b089b9048c426c11b265647d {"aliquot_tag": "ALQ_c146a35f", "sample": "S84", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05719.RNA-Seq.S84_R2.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R2_001.fastq.gz 5805631438 FASTQ S84_R2 submitted_unaligned CPTAC3 3522f3a0-b4e0-455c-a3b0-3c200008c843 712cfb0b18c6c1f49a8148b7f570ef08 {"aliquot_tag": "ALQ_c146a35f", "sample": "S84", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05719.RNA-Seq.transcriptome.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.transcriptome.gdc_realn.bam 6537590889 BAM transcriptome harmonized CPTAC3 8a3f152a-661b-4257-a142-dc50f6f4f4e3 47c6c054e4f785dc6dafa883109d88fd {"aliquot_tag": "ALQ_c146a35f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05759.RNA-Seq.chimeric.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.chimeric.gdc_realn.bam 219596070 BAM chimeric harmonized CPTAC3 9054894e-25de-4414-a00d-7f0fd204ee29 de95f5388850b0716587f721f533874c {"aliquot_tag": "ALQ_dfa066ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05759.RNA-Seq.genomic.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.genomic.gdc_realn.bam 13355746485 BAM genomic harmonized CPTAC3 5af1d13e-1c6c-406c-9005-d07512a4d834 df386916467199c8511378687be6a443 {"aliquot_tag": "ALQ_dfa066ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05759.RNA-Seq.S76_R1.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R1_001.fastq.gz 8677954460 FASTQ S76_R1 submitted_unaligned CPTAC3 60c00409-af2c-470f-8482-dc225cfd9133 8ca4ad128d06e84080634cd58e890d6d {"aliquot_tag": "ALQ_dfa066ae", "sample": "S76", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05759.RNA-Seq.S76_R2.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R2_001.fastq.gz 8995857084 FASTQ S76_R2 submitted_unaligned CPTAC3 eb31ec00-8e43-45ff-a95d-816e4efd9974 a119decf5079ff7226caf5fcc939e056 {"aliquot_tag": "ALQ_dfa066ae", "sample": "S76", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05759.RNA-Seq.transcriptome.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.transcriptome.gdc_realn.bam 12903401938 BAM transcriptome harmonized CPTAC3 c213e434-9dd6-4b08-ab72-cd81750349da 2817ec25f4838c4b21ad409fc72fcf08 {"aliquot_tag": "ALQ_dfa066ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05761.RNA-Seq.chimeric.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.chimeric.gdc_realn.bam 81190401 BAM chimeric harmonized CPTAC3 8029818b-a6d1-4ec0-9491-a648df960df7 00220892e166aa40656c33faed94c41c {"aliquot_tag": "ALQ_5fc60d9c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05761.RNA-Seq.genomic.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.genomic.gdc_realn.bam 6717730749 BAM genomic harmonized CPTAC3 8c2c40b3-6b3f-4aac-86b8-fb38ee842f45 2526cb17e53d8d98b65506545772cb0d {"aliquot_tag": "ALQ_5fc60d9c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05761.RNA-Seq.S12_R1.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R1_001.fastq.gz 2960361213 FASTQ S12_R1 submitted_unaligned CPTAC3 68bff273-36c4-458a-9c71-6df9dd8e4595 176a3b8235f4c9c845022de8fb319940 {"aliquot_tag": "ALQ_5fc60d9c", "sample": "S12", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05761.RNA-Seq.S12_R2.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R2_001.fastq.gz 3104514210 FASTQ S12_R2 submitted_unaligned CPTAC3 4bc066af-2499-41b7-a25c-254529224972 d52366378631d2f2b01ffd4db2ecbc01 {"aliquot_tag": "ALQ_5fc60d9c", "sample": "S12", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05761.RNA-Seq.transcriptome.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.transcriptome.gdc_realn.bam 3180616412 BAM transcriptome harmonized CPTAC3 ad33171c-7889-4294-bf2c-d0194394f15f f879ce6d4f428be5608f00dbd607c74e {"aliquot_tag": "ALQ_5fc60d9c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05763.RNA-Seq.chimeric.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.chimeric.gdc_realn.bam 137504785 BAM chimeric harmonized CPTAC3 0fb4160b-cb5e-40b7-a793-b19efe0a6a19 871c2abaefdfac672e6044d5584c7328 {"aliquot_tag": "ALQ_ee5a8d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05763.RNA-Seq.genomic.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.genomic.gdc_realn.bam 9596981630 BAM genomic harmonized CPTAC3 f32c2136-20d8-4ed2-84ba-38da795d2c28 d95ffcde380d5e4b5e185ced5296778a {"aliquot_tag": "ALQ_ee5a8d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05763.RNA-Seq.S21_R1.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R1_001.fastq.gz 5233557068 FASTQ S21_R1 submitted_unaligned CPTAC3 facce343-1069-418e-a147-21ce454ae89b a1b39d30ca817f339e1fcb2113f64429 {"aliquot_tag": "ALQ_ee5a8d59", "sample": "S21", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05763.RNA-Seq.S21_R2.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R2_001.fastq.gz 5396660473 FASTQ S21_R2 submitted_unaligned CPTAC3 5080671f-2a43-47ef-bb3a-eb50c5ce36d3 6c715b3ac94f59c21451b868c01d0261 {"aliquot_tag": "ALQ_ee5a8d59", "sample": "S21", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05763.RNA-Seq.transcriptome.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.transcriptome.gdc_realn.bam 8110124991 BAM transcriptome harmonized CPTAC3 9cd4cf0f-a587-405e-8105-5c46858d2d22 3811fcb355f611e0a2cf7b1d9dbfeef1 {"aliquot_tag": "ALQ_ee5a8d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05811.MethArray.Green.Tpb C3L-05811 AML Methylation_Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 5c8821fb-9334-43c9-a149-fa61d27e72a0 99d1955cb3ca819325195995b7457f1d {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.MethArray.Red.Tpb C3L-05811 AML Methylation_Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 00221a20-250a-4836-81a2-a451202e0711 3699403a3153f331c7199aabe4ba8bc9 {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.miRNA-Seq.S32_L002_R1.Tpb C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTTGTA_S32_L002_R1_001.unaln.bam 163702318 BAM S32_L002_R1 submitted_unaligned CPTAC3 19912d4a-0364-400f-96dc-c43cf3233c4d d2d3e9ddc388beefae7d4e70fafcfe2f {"aliquot_tag": "ALQ_319186b2", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.miRNA-Seq.Tpb.hg38 C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 5ac8604c-80da-4dea-a3ec-63a9ff6ab696_mirnaseq_gdc_realn.bam 185116772 BAM harmonized CPTAC3 c194f16d-24ee-4519-8d20-ce130ecea63e 9b4871b054f4cead4d886e3a5ef579cd {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.RNA-Seq.chimeric.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.chimeric.gdc_realn.bam 716108042 BAM chimeric harmonized CPTAC3 dfa0ac27-522d-4473-a20f-0f5241f368c7 8dd238f1eefd6616be1d0d230f21cfed {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.RNA-Seq.genomic.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.genomic.gdc_realn.bam 7336963723 BAM genomic harmonized CPTAC3 9be7dcb3-ca6a-4d18-9665-e8a0f0271070 e0e25edb7ba713fd28023aa44a25ecef {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.RNA-Seq.S8_L002_R1.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3684732251 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 6cb1b5aa-f403-498d-9050-f332ff16ac92 39f9427dc032ec222492477d3e883a3b {"aliquot_tag": "ALQ_319186b2", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.RNA-Seq.S8_L002_R2.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3855866298 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 af2c450c-3d51-4d43-ba60-0d8eb62b45bf 3915ab07b23d69bbf76283bba5f7293c {"aliquot_tag": "ALQ_319186b2", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.RNA-Seq.transcriptome.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.transcriptome.gdc_realn.bam 6607803379 BAM transcriptome harmonized CPTAC3 81b2b1c6-26c8-4ad2-baaf-bf0b7b630b91 e5b9579464d2de943ad0ac399b79cc99 {"aliquot_tag": "ALQ_319186b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.WGS.Nbc C3L-05811 AML WGS buccal_normal CPT0356860003 CPT0356860003.WholeGenome.RP-2158.bam 43865214372 BAM submitted_aligned CPTAC3 159a8cdc-8a9c-40db-893e-d5e2d4ebfa3d 227647f57fc0943ddba095566be7ed1f {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05811.WGS.Nbc.hg38 C3L-05811 AML WGS buccal_normal CPT0356860003 c711930c-7ca6-48e3-93c3-b3dd56557045_wgs_gdc_realn.bam 129587914122 BAM harmonized CPTAC3 181017af-d709-456e-ac61-d28f02aee849 5f7cc1418d53a0ac91c3af9e0f2af3c7 {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05811.WGS.Tpb C3L-05811 AML WGS tumor_peripheral_blood CPT0356770002 CPT0356770002.WholeGenome.RP-2158.bam 49051939501 BAM submitted_aligned CPTAC3 c6138ef5-0dca-406a-892e-f60f521a5a64 655c0d02c609075dd433cb388c4eac2b {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.WGS.Tpb.hg38 C3L-05811 AML WGS tumor_peripheral_blood CPT0356770002 e860a435-3ead-4be6-ab3d-8bb21f72ace8_wgs_gdc_realn.bam 142650707608 BAM harmonized CPTAC3 4871fd28-e3ed-4c5a-b4a3-1610aa2281c9 a79d69331ef43919f9e8f94ad2248853 {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.WXS.Nbc C3L-05811 AML WXS buccal_normal CPT0356860003 CPT0356860003.WholeExome.RP-1303.bam 21301774662 BAM submitted_aligned CPTAC3 dff4c51a-6123-4a6f-abae-dff2f12e1ef8 88aec7db1d2974ce12c1ba7687cc7914 {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05811.WXS.Nbc.hg38 C3L-05811 AML WXS buccal_normal CPT0356860003 c711930c-7ca6-48e3-93c3-b3dd56557045_wxs_gdc_realn.bam 28750136778 BAM harmonized CPTAC3 46925dff-cc17-4171-abf7-d449977beb8f 6b5b3f7bd4d0e7449d51561029106da6 {"aliquot_tag": "ALQ_f0607e21", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05811.WXS.Tpb C3L-05811 AML WXS tumor_peripheral_blood CPT0356770002 CPT0356770002.WholeExome.RP-1303.bam 25918598554 BAM submitted_aligned CPTAC3 7fb6b556-8477-4c9b-a895-6c0513f94966 1092209188cf7df9de9ee128de98029d {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05811.WXS.Tpb.hg38 C3L-05811 AML WXS tumor_peripheral_blood CPT0356770002 e860a435-3ead-4be6-ab3d-8bb21f72ace8_wxs_gdc_realn.bam 35859996899 BAM harmonized CPTAC3 a55b5583-f9f9-4864-b605-0c5e79d270b6 6f5b968fe24016b9c0037aabbe5221a4 {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05815.MethArray.Green.Tpb C3L-05815 AML Methylation_Array tumor_peripheral_blood CPT0323050002 205987780094_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 2ecca0b9-956c-4d6d-bee8-890ea77cdf63 f8f48ccfa535746d750891d61f61ae43 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.MethArray.Red.Tpb C3L-05815 AML Methylation_Array tumor_peripheral_blood CPT0323050002 205987780094_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 9f50894f-848a-4160-b1c1-cddb9155596a bbd7343e4b946d3c88d6971d8bcb8cb2 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.miRNA-Seq.S17_L001_R1.Tpb C3L-05815 AML miRNA-Seq tumor_peripheral_blood CPT0323060002 220125_UNC32-K00270_0311_AHMNYYBBXY_TATAAT_S17_L001_R1_001.unaln.bam 268517372 BAM S17_L001_R1 submitted_unaligned CPTAC3 bfaaf5c7-5170-4ff3-9202-03cba09523c0 e4bba3c195ce7f72c99520291490e1d6 {"aliquot_tag": "ALQ_33c9ea64", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.miRNA-Seq.Tpb.hg38 C3L-05815 AML miRNA-Seq tumor_peripheral_blood CPT0323060002 09bd1f13-259e-41ad-af80-0b8d67d0f1a0_mirnaseq_gdc_realn.bam 292469975 BAM harmonized CPTAC3 5dd7d006-0f75-473c-b568-a28bb78e8f07 664d3c649264446440cab41e216b154c {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.RNA-Seq.chimeric.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.chimeric.gdc_realn.bam 814872793 BAM chimeric harmonized CPTAC3 892b16a0-49d8-49b2-95a0-787b98a3a0d1 611a087b13f43ce8cc28a07cf0f9d55c {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.RNA-Seq.genomic.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.genomic.gdc_realn.bam 7738469029 BAM genomic harmonized CPTAC3 d952e72d-3f8b-4bac-ab78-6c511c8179e7 1f6035f3a10b81422ef6d39051788385 {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.RNA-Seq.S24_L006_R1.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3863776464 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 fb78f19a-d92a-4214-934c-10228f1eedab 6421d73d606a2dd61229d3ae62de35c1 {"aliquot_tag": "ALQ_33c9ea64", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.RNA-Seq.S24_L006_R2.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4160927650 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 b97520ae-3d6d-45bd-8432-fe15b935ee85 4cb803e3de73ea0d4b4e37cf55a1b5f1 {"aliquot_tag": "ALQ_33c9ea64", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.RNA-Seq.transcriptome.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.transcriptome.gdc_realn.bam 7804805463 BAM transcriptome harmonized CPTAC3 99f87566-4890-4a1b-88ea-3d5cbcb0ed49 b2bd2099e21d4655250658608647296f {"aliquot_tag": "ALQ_33c9ea64", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.WGS.Nbc C3L-05815 AML WGS buccal_normal CPT0322970003 CPT0322970003.WholeGenome.RP-2158.bam 60729201718 BAM submitted_aligned CPTAC3 3325c4fd-7161-49bc-b40d-3e57f290ea99 72c37446e6ae829c50e1776cc4982fe3 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05815.WGS.Nbc.hg38 C3L-05815 AML WGS buccal_normal CPT0322970003 ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wgs_gdc_realn.bam 180660261361 BAM harmonized CPTAC3 16782800-b974-449d-a904-63e0450305c1 b8c7c7968f792271eb16d5cf21ce7969 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05815.WGS.Tpb C3L-05815 AML WGS tumor_peripheral_blood CPT0323050002 CPT0323050002.WholeGenome.RP-2158.bam 50095177296 BAM submitted_aligned CPTAC3 c8d7964b-476d-40d8-96f7-8f45b216442c 529042f9ea2b018c118af81f882a71b6 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.WGS.Tpb.hg38 C3L-05815 AML WGS tumor_peripheral_blood CPT0323050002 da70e406-4d9b-4969-85b4-6bdbfebb3baa_wgs_gdc_realn.bam 146047405514 BAM harmonized CPTAC3 92bcc4c9-4f9c-49e5-85bf-2f017b14c25a 13781d91b068ed906d13ab8a5a74fbac {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.WXS.Nbc C3L-05815 AML WXS buccal_normal CPT0322970003 CPT0322970003.WholeExome.RP-1303.bam 26668321021 BAM submitted_aligned CPTAC3 12a95782-f4de-4df2-bfcb-349da7cd00e2 68580918e1e1f92c8c718a4fc6e26bf7 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05815.WXS.Nbc.hg38 C3L-05815 AML WXS buccal_normal CPT0322970003 ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wxs_gdc_realn.bam 36411951793 BAM harmonized CPTAC3 b71ca46d-887c-4f93-8d39-d29a490b62fa 7fba893f62c686a9ad0701b150169c09 {"aliquot_tag": "ALQ_f8d6a93e", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05815.WXS.Tpb C3L-05815 AML WXS tumor_peripheral_blood CPT0323050002 CPT0323050002.WholeExome.RP-1303.bam 23099077216 BAM submitted_aligned CPTAC3 0d787110-84e7-4214-9ddc-396ca32f6468 ee0f3e3fadd21c6c31e3db9e470f5d13 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05815.WXS.Tpb.hg38 C3L-05815 AML WXS tumor_peripheral_blood CPT0323050002 da70e406-4d9b-4969-85b4-6bdbfebb3baa_wxs_gdc_realn.bam 32032868839 BAM harmonized CPTAC3 09f05d78-9636-4c06-b153-babf5efa44b4 d844e657184dce433ecce94870f94b58 {"aliquot_tag": "ALQ_746990b4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05816.MethArray.Green.Tpb C3L-05816 AML Methylation_Array tumor_peripheral_blood CPT0341500002 205705520128_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9a88da23-fa5e-45cc-b541-348491b3eb8d dab69e3e3ae7f961ce69ad545c091e2a {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.MethArray.Red.Tpb C3L-05816 AML Methylation_Array tumor_peripheral_blood CPT0341500002 205705520128_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 8de997b4-9b46-4c3b-b19e-65bf0c644723 909f5ac53f6f879ee8e0ac162bfe0501 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.miRNA-Seq.S3_L003_R1.Tpb C3L-05816 AML miRNA-Seq tumor_peripheral_blood CPT0341510002 220505_UNC32-K00270_0319_AHMV2KBBXY_CATTTT_S3_L003_R1_001.unaln.bam 262093107 BAM S3_L003_R1 submitted_unaligned CPTAC3 0f68a5d3-ea29-4a60-8047-ccf9434bbd56 e3aa0e7fb5d9904eb0f8f5cb1ada390e {"aliquot_tag": "ALQ_80d4bf69", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.miRNA-Seq.Tpb.hg38 C3L-05816 AML miRNA-Seq tumor_peripheral_blood CPT0341510002 ff6e4aa2-9fdb-4100-adb4-5c64640e4276_mirnaseq_gdc_realn.bam 288638340 BAM harmonized CPTAC3 801b8d14-e26e-4b58-906a-36164cead799 f7c28f6941b41d5c11c127491b1e9128 {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.RNA-Seq.chimeric.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.chimeric.gdc_realn.bam 702224929 BAM chimeric harmonized CPTAC3 cfd80439-539f-4540-8c1f-3c4b1d2abb4c ae7b7a1589f7279026afcb0557231c69 {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.RNA-Seq.genomic.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.genomic.gdc_realn.bam 8646661750 BAM genomic harmonized CPTAC3 6c1c7b96-66ce-44be-81f1-cd3101d1c12e e664fede11b3311f4e917a5212ba12cf {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.RNA-Seq.S31_L008_R1.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R1_001.fastq.gz 4019035536 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 6530a944-65a6-445f-acd2-40167a8ebabb 02ba8f009763cf67cf090b7bfcac1256 {"aliquot_tag": "ALQ_80d4bf69", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.RNA-Seq.S31_L008_R2.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R2_001.fastq.gz 4355051207 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 1a8aee28-cd05-4321-90b0-975466ae41ac ce088d5c01660b55ac473e507f310953 {"aliquot_tag": "ALQ_80d4bf69", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.RNA-Seq.transcriptome.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.transcriptome.gdc_realn.bam 6660362375 BAM transcriptome harmonized CPTAC3 919f846b-1423-4c5f-a07b-5b7220b17af7 9b332c840c7fa1053e417c2e5d60976e {"aliquot_tag": "ALQ_80d4bf69", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.WGS.Nbc C3L-05816 AML WGS buccal_normal CPT0341470002 CPT0341470002.WholeGenome.RP-2158.bam 46667120796 BAM submitted_aligned CPTAC3 db92010a-dec9-406d-a53b-13ba3defeba9 2951e0786295cd23d33d5207994f5df0 {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05816.WGS.Nbc.hg38 C3L-05816 AML WGS buccal_normal CPT0341470002 77a1298b-2bc1-4de8-ad94-21cf8f17995e_wgs_gdc_realn.bam 145005729848 BAM harmonized CPTAC3 0cc98eed-522d-4c11-927f-456208e184d8 29783aa0f187ae8643924ad2f2d43c2c {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05816.WGS.Tpb C3L-05816 AML WGS tumor_peripheral_blood CPT0341500002 CPT0341500002.WholeGenome.RP-2158.bam 41812881802 BAM submitted_aligned CPTAC3 ac39d56b-23e8-406e-939b-cbed41a6c19b 846b048d210d96f806f66f7229c11e12 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.WGS.Tpb.hg38 C3L-05816 AML WGS tumor_peripheral_blood CPT0341500002 b47d4df7-625d-4f96-a984-cc32fbfe3621_wgs_gdc_realn.bam 120323006253 BAM harmonized CPTAC3 56e0e868-c221-40e0-9757-a091ca137a68 d4b1b5240884ba6999a4ceb01587c2b9 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.WXS.Nbc C3L-05816 AML WXS buccal_normal CPT0341470002 CPT0341470002.WholeExome.RP-1303.bam 24084911537 BAM submitted_aligned CPTAC3 1393f6f9-47e2-4dbc-8894-d2d4e7928109 fa14485fb64d4f2a4f59c85a43bf4a25 {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05816.WXS.Nbc.hg38 C3L-05816 AML WXS buccal_normal CPT0341470002 77a1298b-2bc1-4de8-ad94-21cf8f17995e_wxs_gdc_realn.bam 33138596326 BAM harmonized CPTAC3 d96c9dee-d6ca-4abe-b1f5-df582acb9a32 9545d471bed51e2ad14b757553fcd9a3 {"aliquot_tag": "ALQ_c4c8996c", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05816.WXS.Tpb C3L-05816 AML WXS tumor_peripheral_blood CPT0341500002 CPT0341500002.WholeExome.RP-1303.bam 24840278431 BAM submitted_aligned CPTAC3 6497cdd6-a1ef-47e5-aa2d-f779538dbe82 c6fa1a1ed8c8bfda110d99a45c7d0698 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05816.WXS.Tpb.hg38 C3L-05816 AML WXS tumor_peripheral_blood CPT0341500002 b47d4df7-625d-4f96-a984-cc32fbfe3621_wxs_gdc_realn.bam 34293709629 BAM harmonized CPTAC3 66fbadaf-3853-46c1-8e14-0d1c6563d569 f7d2a995ecf516ae94389cd23a6e0936 {"aliquot_tag": "ALQ_bdb496d9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05818.MethArray.Green.Tpb C3L-05818 AML Methylation_Array tumor_peripheral_blood CPT0341750002 205705520128_R02C01_Grn.idat 13677887 IDAT Green NA CPTAC3 1f307bad-454f-4f71-9d1f-25251429cf54 725309efd2ff674c5619829a5a010fd6 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.MethArray.Red.Tpb C3L-05818 AML Methylation_Array tumor_peripheral_blood CPT0341750002 205705520128_R02C01_Red.idat 13677887 IDAT Red NA CPTAC3 e6f73c43-6b89-409c-b500-58f7a55bb32e 30223600db520ce11a066362079bc637 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.miRNA-Seq.S35_L002_R1.Tpb C3L-05818 AML miRNA-Seq tumor_peripheral_blood CPT0341760002 220125_UNC32-K00270_0311_AHMNYYBBXY_GCCAAT_S35_L002_R1_001.unaln.bam 324966105 BAM S35_L002_R1 submitted_unaligned CPTAC3 293d5ec7-fcf0-49e0-83f1-9ddd8d2dbe63 dc7c17fec4c72a834a9507e0a69a0170 {"aliquot_tag": "ALQ_7f3cc272", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.miRNA-Seq.Tpb.hg38 C3L-05818 AML miRNA-Seq tumor_peripheral_blood CPT0341760002 20769197-fd3e-4555-8505-8d306c84ec4c_mirnaseq_gdc_realn.bam 349602779 BAM harmonized CPTAC3 fbe96dbd-6212-4566-83bf-9208ca0ff7f4 e3c1a712158630dae3e1d5ca1dbc503c {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.RNA-Seq.chimeric.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.chimeric.gdc_realn.bam 921463062 BAM chimeric harmonized CPTAC3 1b374142-612f-497d-af94-4622106bc6c9 9545462b4d64956a5f00eb432e24e924 {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.RNA-Seq.genomic.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.genomic.gdc_realn.bam 9352436380 BAM genomic harmonized CPTAC3 f1e939d5-e92a-4648-947e-f0d153817fbc a742e4e1040ce40084913de8e1934979 {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.RNA-Seq.S30_L008_R1.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R1_001.fastq.gz 4451676793 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 6692d0fd-d8c6-44be-8d98-642dd6a372be fe91152f48667f665256ed073c9a9674 {"aliquot_tag": "ALQ_7f3cc272", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.RNA-Seq.S30_L008_R2.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R2_001.fastq.gz 4910816086 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 10684694-b8f8-4f79-9239-4b736dba2e74 33d5f83da157f18749256b07db2db30e {"aliquot_tag": "ALQ_7f3cc272", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.RNA-Seq.transcriptome.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.transcriptome.gdc_realn.bam 8860823205 BAM transcriptome harmonized CPTAC3 a6380a77-739b-4c13-9000-5800e70123e9 c30b67bdb3b7ad0a9d23581a05d979c2 {"aliquot_tag": "ALQ_7f3cc272", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.WGS.Nbc C3L-05818 AML WGS buccal_normal CPT0341720002 CPT0341720002.WholeGenome.RP-2158.bam 47674331431 BAM submitted_aligned CPTAC3 07d93477-605e-4142-9425-10c1fd3e75f7 216a7eb91c57038a8e8a82b770731ba8 {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05818.WGS.Nbc.hg38 C3L-05818 AML WGS buccal_normal CPT0341720002 1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wgs_gdc_realn.bam 142810189280 BAM harmonized CPTAC3 79f3bf76-08d2-40cc-a261-d303e5d51318 85735faee28b462d5369edd8b4fb7bda {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05818.WGS.Tpb C3L-05818 AML WGS tumor_peripheral_blood CPT0341750002 CPT0341750002.WholeGenome.RP-2158.bam 52201548894 BAM submitted_aligned CPTAC3 8aec49e1-b072-4d89-8642-caf602f4aea0 a63e8e5917fb0599bb570b6e0da2dabe {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.WGS.Tpb.hg38 C3L-05818 AML WGS tumor_peripheral_blood CPT0341750002 f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wgs_gdc_realn.bam 159950743711 BAM harmonized CPTAC3 33763a8a-1d39-4242-a314-022ebf386cde 1c496d0ff879c0e4fd7f1c80064bc363 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.WXS.Nbc C3L-05818 AML WXS buccal_normal CPT0341720002 CPT0341720002.WholeExome.RP-1303.bam 30048890719 BAM submitted_aligned CPTAC3 9cb033f9-5dd8-4992-94db-9dc6e6267e2c 3e7303f2ad4cf16ee61605185b50b035 {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05818.WXS.Nbc.hg38 C3L-05818 AML WXS buccal_normal CPT0341720002 1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wxs_gdc_realn.bam 41111750919 BAM harmonized CPTAC3 5730c453-4048-4c9e-b10a-06c63400babf f26ef93daab0b4c85ed37cbb9f0a797a {"aliquot_tag": "ALQ_8abc64b2", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05818.WXS.Tpb C3L-05818 AML WXS tumor_peripheral_blood CPT0341750002 CPT0341750002.WholeExome.RP-1303.bam 22320744456 BAM submitted_aligned CPTAC3 2d23e5e3-1101-4bd3-a656-899cecad8808 4c2a3c64f96c808b29fbfc9fb464d658 {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05818.WXS.Tpb.hg38 C3L-05818 AML WXS tumor_peripheral_blood CPT0341750002 f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wxs_gdc_realn.bam 30807850895 BAM harmonized CPTAC3 805544ba-b2c2-4025-acae-b1a7a6c4110f 9e659890c0ae82154d6768f852212eaf {"aliquot_tag": "ALQ_389cb8a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05819.MethArray.Green.Tpb C3L-05819 AML Methylation_Array tumor_peripheral_blood CPT0341900002 205987780101_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 40d53142-6124-4deb-b37a-8475a419b29d b959d3f876ebc10cc11b898b4acb6c27 {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.MethArray.Red.Tpb C3L-05819 AML Methylation_Array tumor_peripheral_blood CPT0341900002 205987780101_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 474cb2d4-6e3d-43e7-96aa-13325b2b4149 c4eb458864a903fce92ccc53d17206b6 {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.miRNA-Seq.S29_L002_R1.Tpb C3L-05819 AML miRNA-Seq tumor_peripheral_blood CPT0341910002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGATC_S29_L002_R1_001.unaln.bam 208343040 BAM S29_L002_R1 submitted_unaligned CPTAC3 4f1e8895-5758-45a8-ad68-e1d6039c2b9a bc1455f13905769d664c4466ac3fc45e {"aliquot_tag": "ALQ_f7167f12", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.miRNA-Seq.Tpb.hg38 C3L-05819 AML miRNA-Seq tumor_peripheral_blood CPT0341910002 054f8a59-382c-4303-95f9-f405c58a0dae_mirnaseq_gdc_realn.bam 226042666 BAM harmonized CPTAC3 44a324d3-5e63-4861-a9e1-5fa537fb54f5 3783d31e665277b6b16248632a9a1ad3 {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.RNA-Seq.chimeric.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.chimeric.gdc_realn.bam 911622814 BAM chimeric harmonized CPTAC3 b1e3a119-d2c8-4a1f-a521-575d98a72675 5bbe0e2453b5c59f82399c22c840a9fe {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.RNA-Seq.genomic.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.genomic.gdc_realn.bam 9245352947 BAM genomic harmonized CPTAC3 7602646f-ab8e-410c-8db2-27ebda35c5e9 4a70d5d7491027d9c5be1d50074e89d7 {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.RNA-Seq.S1_L001_R1.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R1_001.fastq.gz 4611330437 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 66199b6f-b71a-40a8-94a5-abbdb0b4af76 01a15df3a1b69127a78b5947ce42359c {"aliquot_tag": "ALQ_f7167f12", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.RNA-Seq.S1_L001_R2.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R2_001.fastq.gz 5054971938 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 205ac3a6-e412-4af0-9756-1e35ba0fd4b3 57f749dc6f7a37f37992722ff83ac726 {"aliquot_tag": "ALQ_f7167f12", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.RNA-Seq.transcriptome.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.transcriptome.gdc_realn.bam 10087739230 BAM transcriptome harmonized CPTAC3 f9028cb1-8041-4cbf-bffd-3abfdec79d64 fa3f6caa06b0186a395c989abc2105fe {"aliquot_tag": "ALQ_f7167f12", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.WGS.Nbc C3L-05819 AML WGS buccal_normal CPT0341870002 CPT0341870002.WholeGenome.RP-2158.bam 46715691034 BAM submitted_aligned CPTAC3 cadb58ae-ec45-4a24-9111-ca8fc6c5d70a b93649db1fddc5691a25d8e8014358a7 {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05819.WGS.Nbc.hg38 C3L-05819 AML WGS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wgs_gdc_realn.bam 137880656738 BAM harmonized CPTAC3 08e4d192-7b7d-4f5a-859f-7a804bca3ddf 3d3fe7b32d619d8f9b037e921a132a8a {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05819.WGS.Tpb C3L-05819 AML WGS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeGenome.RP-2158.bam 43495843547 BAM submitted_aligned CPTAC3 091cea99-fd2c-40d6-bc4b-c79347052637 93a4d65725d0431e4e787453b5a46aec {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.WGS.Tpb.hg38 C3L-05819 AML WGS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wgs_gdc_realn.bam 383286033134 BAM harmonized CPTAC3 c395cc56-30a7-4f7d-9a6c-33b84e36f2fc 06a024c709157b07ebac97dc2c816daa {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.WXS.Nbc C3L-05819 AML WXS buccal_normal CPT0341870002 CPT0341870002.WholeExome.RP-1303.bam 24953011849 BAM submitted_aligned CPTAC3 ce39e506-73dc-4f0c-b98d-bf42ebdeaa36 1b0773dea3c285af0a9c267705a2f4d1 {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05819.WXS.Nbc.hg38 C3L-05819 AML WXS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wxs_gdc_realn.bam 34395335551 BAM harmonized CPTAC3 08a8f112-a896-4435-bec0-4f7c3081d5c3 dfd5017f4273c810ea93f63b328c376c {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05819.WXS.Tpb C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeExome.RP-1303.bam 23019547119 BAM submitted_aligned CPTAC3 43ffbea2-a345-48ac-9b95-8105e9d69436 f0038c5a840d765dd3faeaed879ec71c {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05819.WXS.Tpb.hg38 C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wxs_gdc_realn.bam 32072259434 BAM harmonized CPTAC3 09d2c250-7d1b-4ce1-b341-f22b344cc4ec f4165b21c964967c75dc31859b3a1bf5 {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05848.MethArray.Green.T C3L-05848 UCEC Methylation_Array tumor CPT0288750009 204372030106_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0a065a8b-c02c-4b0b-b6a3-4e251a8c4ad4 9558bde51f725c60484b03d5cdb0df62 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.MethArray.Red.T C3L-05848 UCEC Methylation_Array tumor CPT0288750009 204372030106_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 b4c3d582-0793-4f9b-9ec4-897dba398e85 03be4c8aed9fac92cb60fb38ecf9d196 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.miRNA-Seq.S42_L008_R1.T C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAATCG_S42_L008_R1_001.unaln.bam 194402343 BAM S42_L008_R1 submitted_unaligned CPTAC3 eb251cc7-d9e3-4755-b1d5-f71ef8dbde73 1affa8e420f5b522ac6a6e461f39cff8 {"aliquot_tag": "ALQ_eabd3864", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.miRNA-Seq.T.hg38 C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 ac7e0cd3-76ef-4112-b477-b55de7dfbf35_mirnaseq_gdc_realn.bam 211461102 BAM harmonized CPTAC3 bf128935-81ed-4151-9e03-b97d6b46d5ed 843570f4183035b0cc87774adb9e44bc {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.chimeric.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.chimeric.gdc_realn.bam 37726313 BAM chimeric harmonized CPTAC3 f483a0c3-de96-45cd-a9ea-7953623f902b 760916b6ba281ae41b05272b6025e2e8 {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.chimeric.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.chimeric.gdc_realn.bam 226405297 BAM chimeric harmonized CPTAC3 e4c4926a-2aba-4524-9d5c-a02bcf8910b7 f3867521443870465c4a7c2f23d60efc {"aliquot_tag": "ALQ_3379d717", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.genomic.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.genomic.gdc_realn.bam 9754759588 BAM genomic harmonized CPTAC3 25072bd1-ed94-4ba4-a5cb-08578c8fe1ed a06a8e6656f397d1b3522e840a4a3a91 {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.genomic.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.genomic.gdc_realn.bam 11537591794 BAM genomic harmonized CPTAC3 c50b9c49-58ca-4dbb-8e76-9911e8c53aac 78611fe61649ebd35171e57b50d25e73 {"aliquot_tag": "ALQ_3379d717", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.S61_L007_R1.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R1_001.fastq.gz 4848554227 FASTQ S61_L007_R1 submitted_unaligned CPTAC3 a20970a5-0b49-4d46-b295-01241bc3bddf 0828dbbb1aab50ffe8838d8ead7e1ac5 {"aliquot_tag": "ALQ_eabd3864", "sample": "S61", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.S61_L007_R2.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R2_001.fastq.gz 5280894738 FASTQ S61_L007_R2 submitted_unaligned CPTAC3 a1e74ea4-3a49-425b-9958-e27affeb1742 5069041bffd07e6f5237160e69784be1 {"aliquot_tag": "ALQ_eabd3864", "sample": "S61", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.S76_R1.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R1_001.fastq.gz 6042484243 FASTQ S76_R1 submitted_unaligned CPTAC3 67f23630-5f13-40c2-be70-6a06108da2b8 1153b31a563449e62db0c14bfde5ac66 {"aliquot_tag": "ALQ_3379d717", "sample": "S76", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.S76_R2.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R2_001.fastq.gz 6285981923 FASTQ S76_R2 submitted_unaligned CPTAC3 c81c503d-88b0-4dbf-acbd-14d2c990ae0d 59593c04495adcd7251503e84062feae {"aliquot_tag": "ALQ_3379d717", "sample": "S76", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.transcriptome.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.transcriptome.gdc_realn.bam 11540069244 BAM transcriptome harmonized CPTAC3 909d20ce-8f5b-443a-a13c-c84439bfa734 aafd0718c5e4fa59efdd34c5ec5adf61 {"aliquot_tag": "ALQ_eabd3864", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.RNA-Seq.transcriptome.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.transcriptome.gdc_realn.bam 5772694903 BAM transcriptome harmonized CPTAC3 2d8da558-6f7d-4c91-91f8-427b235d8ba5 4d508a820d2311a95a76984bc496991f {"aliquot_tag": "ALQ_3379d717", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.WGS.N C3L-05848 UCEC WGS blood_normal CPT0297030002 CPT0297030002.WholeGenome.RP-2158.bam 22123037304 BAM submitted_aligned CPTAC3 c46afebd-b2b5-4bd2-a465-59767618650c 3e4c03af9aef5dabc6070fd964d2c386 {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05848.WGS.N.hg38 C3L-05848 UCEC WGS blood_normal CPT0297030002 7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wgs_gdc_realn.bam 64633587295 BAM harmonized CPTAC3 b9d8dbc3-28d5-4a81-99c1-88246d743f56 9ac5302cfb94d79f29658c872cbcfc7f {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05848.WGS.T C3L-05848 UCEC WGS tumor CPT0288750009 CPT0288750009.WholeGenome.RP-2158.bam 25131159601 BAM submitted_aligned CPTAC3 e2914989-c6d8-44cf-8d69-6d01e9e1ad7b c2e022413d75838d5cf0dc479ca86ad7 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.WGS.T.hg38 C3L-05848 UCEC WGS tumor CPT0288750009 4371e677-059d-4c39-9ec3-fdbad29b064e_wgs_gdc_realn.bam 76555436982 BAM harmonized CPTAC3 11884c29-689e-4c70-adfb-9490351d8c07 664807c9efdafffacfcbc743ea87beaa {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.WXS.N C3L-05848 UCEC WXS blood_normal CPT0297030002 CPT0297030002.WholeExome.RP-1303.bam 26000564568 BAM submitted_aligned CPTAC3 912c08b8-6df4-4890-b53b-5015d80b1ef5 283b3e9fa7ce08fa2ea6e524a3b0a0b0 {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05848.WXS.N.hg38 C3L-05848 UCEC WXS blood_normal CPT0297030002 7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wxs_gdc_realn.bam 34683685743 BAM harmonized CPTAC3 78c6363c-4e2d-4136-ab9f-0b22d51bd0b8 b765391b3440f331cee9ef7931c4e96f {"aliquot_tag": "ALQ_45774912", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05848.WXS.T C3L-05848 UCEC WXS tumor CPT0288750009 CPT0288750009.WholeExome.RP-1303.bam 18294568345 BAM submitted_aligned CPTAC3 e3d6b78f-b44b-4870-844a-fed430788176 a9b4d65b450a018d258a3c5177a3d1fa {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05848.WXS.T.hg38 C3L-05848 UCEC WXS tumor CPT0288750009 4371e677-059d-4c39-9ec3-fdbad29b064e_wxs_gdc_realn.bam 25894255424 BAM harmonized CPTAC3 bfcf60a4-25f0-45de-a0f9-456c18c0c8f8 e80f22e1a131c02a775172e3baa0cbed {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.MethArray.Green.T C3L-05849 UCEC Methylation_Array tumor CPT0288830009 204372030013_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d2d41196-9c85-492e-a2e9-595d316fdd9b 89aeece8ea279672a9d460793738fb93 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.MethArray.Red.T C3L-05849 UCEC Methylation_Array tumor CPT0288830009 204372030013_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 7192561d-dbe3-42f3-86e5-7a2079f29616 e62f8478b6d4cb9f0dce0b4f46f42491 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.miRNA-Seq.S43_L008_R1.T C3L-05849 UCEC miRNA-Seq tumor CPT0288830006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TACAGC_S43_L008_R1_001.unaln.bam 257617056 BAM S43_L008_R1 submitted_unaligned CPTAC3 12b38f1a-5c62-444b-a4fe-9275a44fdb56 8eca96a665344db3d776b693485a9a99 {"aliquot_tag": "ALQ_94ab7f11", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.miRNA-Seq.T.hg38 C3L-05849 UCEC miRNA-Seq tumor CPT0288830006 60d14046-a220-448e-9ae8-76ae2a990969_mirnaseq_gdc_realn.bam 280378364 BAM harmonized CPTAC3 bb8b77d2-9651-4f5e-a987-8e8fc9881125 794e2e8ef51c963582e2ddd5e0551756 {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.chimeric.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.chimeric.gdc_realn.bam 27044589 BAM chimeric harmonized CPTAC3 e48efae0-bf52-438d-9cb4-eb7c44422b30 0b5a1d5aa8979e9693a564c3b528f8d8 {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.chimeric.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.chimeric.gdc_realn.bam 329121970 BAM chimeric harmonized CPTAC3 84f9fcac-dcca-4b82-99f8-62089c66bb08 9d8eacaf569ee2c31a5840bd276245f3 {"aliquot_tag": "ALQ_b8ef36a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.genomic.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.genomic.gdc_realn.bam 7231940242 BAM genomic harmonized CPTAC3 89104d1c-b108-4b3c-899a-2ca382be6627 fa1a99b91d7175497b8383ae96bd540b {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.genomic.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.genomic.gdc_realn.bam 17333365278 BAM genomic harmonized CPTAC3 c355cfb3-282a-49c3-a1f4-fa30ea2d4d76 a8dd8183bcdebb141e02ab15c5d9290f {"aliquot_tag": "ALQ_b8ef36a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.S10_R1.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R1_001.fastq.gz 10346834136 FASTQ S10_R1 submitted_unaligned CPTAC3 51333577-b0d4-4b8d-b702-385e168932cf d02b2b75fec7dc619a3e17585f784350 {"aliquot_tag": "ALQ_b8ef36a2", "sample": "S10", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.S10_R2.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R2_001.fastq.gz 10578480756 FASTQ S10_R2 submitted_unaligned CPTAC3 efa680fe-8c6d-4c23-90d6-36694fce63a4 16ab50bf8bb22dee65a57b6c21628879 {"aliquot_tag": "ALQ_b8ef36a2", "sample": "S10", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.S62_L007_R1.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R1_001.fastq.gz 3516758807 FASTQ S62_L007_R1 submitted_unaligned CPTAC3 df1c6490-5106-4e02-945a-118b9cef06fb ad456ac0f22fa90061f3a38d3c26ce11 {"aliquot_tag": "ALQ_94ab7f11", "sample": "S62", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.S62_L007_R2.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R2_001.fastq.gz 3754319312 FASTQ S62_L007_R2 submitted_unaligned CPTAC3 5fc90fb6-c5e7-4c8f-b9b0-1f19f87f64d9 0d37912ac646333a2821ffba59e4dce8 {"aliquot_tag": "ALQ_94ab7f11", "sample": "S62", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.transcriptome.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.transcriptome.gdc_realn.bam 8627517266 BAM transcriptome harmonized CPTAC3 1260dace-8a81-4817-b9d1-315c05b53a31 5459812ad9b4ad1ec3a9c59f50732bdf {"aliquot_tag": "ALQ_94ab7f11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.RNA-Seq.transcriptome.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.transcriptome.gdc_realn.bam 10532517647 BAM transcriptome harmonized CPTAC3 8fd56d1d-2efd-426d-8c9a-0c159a7f5d6e a746fb437ba8044538e3a45877efcf88 {"aliquot_tag": "ALQ_b8ef36a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.WGS.N C3L-05849 UCEC WGS blood_normal CPT0297010002 CPT0297010002.WholeGenome.RP-2158.bam 19678690999 BAM submitted_aligned CPTAC3 38a9d269-957d-4464-8438-72bcdf6f7846 47e36248c26a55d353b8cac4283feb75 {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05849.WGS.N.hg38 C3L-05849 UCEC WGS blood_normal CPT0297010002 138f530d-492b-4fc7-aba2-be1c9dc10174_wgs_gdc_realn.bam 54235420135 BAM harmonized CPTAC3 5aa3512e-d383-486a-ac23-d66db53f7388 44958cf06ffb92f5c819829a67b68e2d {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05849.WGS.T C3L-05849 UCEC WGS tumor CPT0288830009 CPT0288830009.WholeGenome.RP-2158.bam 23824195874 BAM submitted_aligned CPTAC3 195a1036-7fd1-4656-9b77-db40e0e725c8 4f86a0916f55c9bb9c42d0326d48b166 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.WGS.T.hg38 C3L-05849 UCEC WGS tumor CPT0288830009 6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wgs_gdc_realn.bam 70891852385 BAM harmonized CPTAC3 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e b6e99ff1f7255b44f9ee9f12b60e1dff {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.WXS.N C3L-05849 UCEC WXS blood_normal CPT0297010002 CPT0297010002.WholeExome.RP-1303.bam 20210526266 BAM submitted_aligned CPTAC3 bb7fbe45-592e-461e-b4e9-045c4f51fe35 05903dc2d9b27c8d2d26f399980accfd {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05849.WXS.N.hg38 C3L-05849 UCEC WXS blood_normal CPT0297010002 138f530d-492b-4fc7-aba2-be1c9dc10174_wxs_gdc_realn.bam 27934801827 BAM harmonized CPTAC3 51522438-df89-4bfe-ba34-8a260e48d23d 60fb910986a56f540b231de7ff8d463d {"aliquot_tag": "ALQ_3fb71a72", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-05849.WXS.T C3L-05849 UCEC WXS tumor CPT0288830009 CPT0288830009.WholeExome.RP-1303.bam 16284714004 BAM submitted_aligned CPTAC3 8bfa03c5-2932-49af-bc0e-aae6bff93d23 3d78bb409b05bfedf6ce7489d1bf3832 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05849.WXS.T.hg38 C3L-05849 UCEC WXS tumor CPT0288830009 6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wxs_gdc_realn.bam 22839452402 BAM harmonized CPTAC3 4898b14f-d681-409a-8be3-7ceaa7a1207d 296ed39f516d294ed3f5d4125b224928 {"aliquot_tag": "ALQ_4146280", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05861.MethArray.Green.Tbm C3L-05861 AML Methylation_Array tumor_bone_marrow CPT0307200002 205555380130_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ad0aaf0e-55d4-41a8-82a8-228218d25af3 e90b96d5c49cc7cbba8a06f219b0041b {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.MethArray.Red.Tbm C3L-05861 AML Methylation_Array tumor_bone_marrow CPT0307200002 205555380130_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 d84754a8-9c68-45af-8cae-a6ca64806cbe 03b565395667ddbe0740c782e6b4e0c5 {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.miRNA-Seq.S6_L001_R1.Tbm C3L-05861 AML miRNA-Seq tumor_bone_marrow CPT0307210002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATGTCA_S6_L001_R1_001.unaln.bam 311283102 BAM S6_L001_R1 submitted_unaligned CPTAC3 289717ca-9254-4530-b0f1-fa7acf024570 997dc363ce2a56b6d4728498269f5040 {"aliquot_tag": "ALQ_7a4bb411", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.miRNA-Seq.Tbm.hg38 C3L-05861 AML miRNA-Seq tumor_bone_marrow CPT0307210002 45aa211d-ff02-4bd8-b7dd-ccb2c21843ba_mirnaseq_gdc_realn.bam 333579558 BAM harmonized CPTAC3 13aed3ca-56bc-420e-97eb-4a1a26be0586 60374fb14caf0bea7939c3858582688e {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.RNA-Seq.chimeric.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.chimeric.gdc_realn.bam 648535958 BAM chimeric harmonized CPTAC3 1dec8005-7a84-4c48-8d1b-f22811963836 74dabef2bdb633d7475efc4ca05f2012 {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.RNA-Seq.genomic.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.genomic.gdc_realn.bam 5927287767 BAM genomic harmonized CPTAC3 1107bdb6-dcd6-4339-bcd4-8e4565eae87f cb12838755aee2660cfe70b0a964f966 {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.RNA-Seq.S20_L005_R1.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R1_001.fastq.gz 3187800828 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 074fab94-27aa-444e-b8c4-f06a6f3cdf3d 20c63a274eefbfb36bde2f2f2a5c0a7c {"aliquot_tag": "ALQ_7a4bb411", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.RNA-Seq.S20_L005_R2.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R2_001.fastq.gz 3400819138 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 a95b940a-0080-4dab-9c33-14af4ecce0ec 7309dcbc031b62270976b5f3250161a0 {"aliquot_tag": "ALQ_7a4bb411", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.RNA-Seq.transcriptome.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.transcriptome.gdc_realn.bam 5543390834 BAM transcriptome harmonized CPTAC3 7aa9f6da-860c-47fe-9d49-48ad1251cb16 fd8039f365a9cb51c0026790d80a556d {"aliquot_tag": "ALQ_7a4bb411", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.WGS.Nbc C3L-05861 AML WGS buccal_normal CPT0307170003 CPT0307170003.WholeGenome.RP-2158.bam 44663044645 BAM submitted_aligned CPTAC3 7cd431da-14c5-41df-9d2a-c29a40a8209b ab7f61a4eb2f386a6e2b798cf2a0cf14 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05861.WGS.Nbc.hg38 C3L-05861 AML WGS buccal_normal CPT0307170003 149a73ab-2d7c-4436-9206-445a2c0a0679_wgs_gdc_realn.bam 130807377085 BAM harmonized CPTAC3 a45b486c-f931-4d85-a7db-ed57d173c8ba 8334256b882a998f842dba910ffa7427 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05861.WGS.Tbm C3L-05861 AML WGS tumor_bone_marrow CPT0307200002 CPT0307200002.WholeGenome.RP-2158.bam 47522595242 BAM submitted_aligned CPTAC3 be971e95-c787-4fbd-b148-0727428cedf4 999a8b39affbc479ad51eb9cdc295c3a {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.WGS.Tbm.hg38 C3L-05861 AML WGS tumor_bone_marrow CPT0307200002 99f098ca-38df-4e75-abb0-48d888a44848_wgs_gdc_realn.bam 143247750678 BAM harmonized CPTAC3 6e5f92dc-1661-4759-80cb-565482e59b19 674467e54c0beaaa2db42dd4936879a0 {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.WXS.Nbc C3L-05861 AML WXS buccal_normal CPT0307170003 CPT0307170003.WholeExome.RP-1303.bam 26737526911 BAM submitted_aligned CPTAC3 d4c34ff8-590d-4172-a359-0c23c40d98d2 4f4166bdeaa824eafb96b2281df69c75 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05861.WXS.Nbc.hg38 C3L-05861 AML WXS buccal_normal CPT0307170003 149a73ab-2d7c-4436-9206-445a2c0a0679_wxs_gdc_realn.bam 37481982889 BAM harmonized CPTAC3 c72348e7-a76b-4ff7-83b6-878245aea7a2 47ae7689d206ee8d80245bf253a43c73 {"aliquot_tag": "ALQ_4980389", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05861.WXS.Tbm C3L-05861 AML WXS tumor_bone_marrow CPT0307200002 CPT0307200002.WholeExome.RP-1303.bam 21868398723 BAM submitted_aligned CPTAC3 1b8f129c-18c3-492a-a659-89518511587d b121155f90ccc57ad6620a83d58fb52f {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05861.WXS.Tbm.hg38 C3L-05861 AML WXS tumor_bone_marrow CPT0307200002 99f098ca-38df-4e75-abb0-48d888a44848_wxs_gdc_realn.bam 30172099373 BAM harmonized CPTAC3 52cc8fbc-4b54-4783-a429-5ad192823cb0 eeaeb5b542fcbc4a2454341764b96d5b {"aliquot_tag": "ALQ_472b9da1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05862.MethArray.Green.Tpb C3L-05862 AML Methylation_Array tumor_peripheral_blood CPT0342270002 205705520145_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6ed2d966-56b4-46e2-8eb6-332c880d27f0 6d8b49c35002b29de4798b6d972d788a {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.MethArray.Red.Tpb C3L-05862 AML Methylation_Array tumor_peripheral_blood CPT0342270002 205705520145_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 276c813d-aa31-4da0-b57b-9ddaa5eb81dc dde38296936ef604c49253dcf4bf352b {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.miRNA-Seq.S24_L002_R1.Tpb C3L-05862 AML miRNA-Seq tumor_peripheral_blood CPT0342280002 220125_UNC32-K00270_0311_AHMNYYBBXY_ACTTGA_S24_L002_R1_001.unaln.bam 216629061 BAM S24_L002_R1 submitted_unaligned CPTAC3 0de6ee7e-b113-45a2-89d2-cb034bbaadf3 6aba474a4cf64d88f4b9e0cd3a9961e0 {"aliquot_tag": "ALQ_a129f73d", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.miRNA-Seq.Tpb.hg38 C3L-05862 AML miRNA-Seq tumor_peripheral_blood CPT0342280002 50059e20-3c64-43ee-a47d-29db1a1f3069_mirnaseq_gdc_realn.bam 232126947 BAM harmonized CPTAC3 2200976d-bd91-4363-bb94-fd2156acab13 0838e9ad70e06e631d7422cebd0ac8c6 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.RNA-Seq.chimeric.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.chimeric.gdc_realn.bam 634399063 BAM chimeric harmonized CPTAC3 214d7a29-195f-4c5e-8109-350fe65b7e04 0c2f4930d8e29e05abfe77d49386f543 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.RNA-Seq.genomic.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.genomic.gdc_realn.bam 7385049873 BAM genomic harmonized CPTAC3 d0686197-8c5b-47af-8622-8affef9d34a4 34cb9a9512578583f93d44ad04877ef2 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.RNA-Seq.S3_L001_R1.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R1_001.fastq.gz 3427394374 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 30ae6399-c882-40b1-b4e9-ff2b6b57bb15 4b3ca5cd6d1b2b475b7828244b2f38d0 {"aliquot_tag": "ALQ_a129f73d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.RNA-Seq.S3_L001_R2.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R2_001.fastq.gz 3741545345 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 16980c6a-440a-4af7-b908-4daa178678a3 e79fd79e86d70494c75b98faa09759da {"aliquot_tag": "ALQ_a129f73d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.RNA-Seq.transcriptome.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.transcriptome.gdc_realn.bam 5436257028 BAM transcriptome harmonized CPTAC3 cadbf231-7f94-4cf3-8fbf-b6162725b078 86fab154a0492c6710c81f00542c86f9 {"aliquot_tag": "ALQ_a129f73d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.WGS.Nbc C3L-05862 AML WGS buccal_normal CPT0342240001 CPT0342240001.WholeGenome.RP-2158.bam 45841563474 BAM submitted_aligned CPTAC3 8556d413-3ad9-415a-9166-aa41a46a283e 8c27e3cab707c909a8d4d1aa67cd45a6 {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05862.WGS.Nbc.hg38 C3L-05862 AML WGS buccal_normal CPT0342240001 a16868eb-a995-49ef-b7de-f279cfbfdbd1_wgs_gdc_realn.bam 135719680184 BAM harmonized CPTAC3 cc820c53-59a0-4c02-ad49-62d668703147 fd6c7337886906af4a0406913c915979 {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05862.WGS.Tpb C3L-05862 AML WGS tumor_peripheral_blood CPT0342270002 CPT0342270002.WholeGenome.RP-2158.bam 44839633585 BAM submitted_aligned CPTAC3 6658985d-4542-4dc4-843e-71930d89299e 50d6c61035e773dda869a3ef3d63ba70 {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.WGS.Tpb.hg38 C3L-05862 AML WGS tumor_peripheral_blood CPT0342270002 3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wgs_gdc_realn.bam 133878947429 BAM harmonized CPTAC3 dd71b842-dcca-436e-bd57-2a4a47945ea1 6fb3f551560b853753b22acbde13acd3 {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.WXS.Nbc C3L-05862 AML WXS buccal_normal CPT0342240001 CPT0342240001.WholeExome.RP-1303.bam 31487124942 BAM submitted_aligned CPTAC3 9de7e781-1907-46d5-bcbf-799d39c22aa0 97986fdbbec04ced2ca160aec1ffade0 {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05862.WXS.Nbc.hg38 C3L-05862 AML WXS buccal_normal CPT0342240001 a16868eb-a995-49ef-b7de-f279cfbfdbd1_wxs_gdc_realn.bam 42852083239 BAM harmonized CPTAC3 59e58410-19e6-4330-b6c9-ebc6df712950 4a4083231791012ce5011d48aee7690e {"aliquot_tag": "ALQ_fdd04b86", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05862.WXS.Tpb C3L-05862 AML WXS tumor_peripheral_blood CPT0342270002 CPT0342270002.WholeExome.RP-1303.bam 29751552173 BAM submitted_aligned CPTAC3 56681293-b713-477c-93ee-38c00d3e5439 9cdd73fd707756af14b0e5590d008c75 {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05862.WXS.Tpb.hg38 C3L-05862 AML WXS tumor_peripheral_blood CPT0342270002 3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wxs_gdc_realn.bam 41309502516 BAM harmonized CPTAC3 f81b016a-7298-4e77-a7b1-5627c569d027 01c7bf1981729cf5072e3381eea108ed {"aliquot_tag": "ALQ_237960ec", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05865.MethArray.Green.Tbm C3L-05865 AML Methylation_Array tumor_bone_marrow CPT0449290002 205705520145_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9234ba3c-02b2-40cd-85b8-810eaae69233 2c4a582349d757fe045d622e60f2d7d8 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.MethArray.Red.Tbm C3L-05865 AML Methylation_Array tumor_bone_marrow CPT0449290002 205705520145_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 2fd3072c-e183-443b-a5c6-96ff5dcf81a0 d47611d38f8b0a5d4965893412d77e22 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.miRNA-Seq.S14_L003_R1.Tbm C3L-05865 AML miRNA-Seq tumor_bone_marrow CPT0449300002 220125_UNC32-K00270_0311_AHMNYYBBXY_GACGAC_S14_L003_R1_001.unaln.bam 241844446 BAM S14_L003_R1 submitted_unaligned CPTAC3 690ee6ad-4f6f-4550-be7f-7f503963bf83 00e7f324b339a4272d3ddd9e4bc6b8b0 {"aliquot_tag": "ALQ_3c63566a", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.miRNA-Seq.Tbm.hg38 C3L-05865 AML miRNA-Seq tumor_bone_marrow CPT0449300002 c0bc0518-c44c-423a-ae27-9747adf4e393_mirnaseq_gdc_realn.bam 269893894 BAM harmonized CPTAC3 68e92743-bb46-480e-8f2a-5409df845f58 4f068e0cc014ed010e97cd8892330e84 {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.RNA-Seq.chimeric.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.chimeric.gdc_realn.bam 578823785 BAM chimeric harmonized CPTAC3 782b930d-fa3d-405e-bf3c-48bc807f9882 e00752f968ecb0fa6257e6e45e7fe0b5 {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.RNA-Seq.genomic.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.genomic.gdc_realn.bam 7411104849 BAM genomic harmonized CPTAC3 93eddf2e-16f7-4056-890c-42b2ccd1278d 78a6fb89f46d9de923532723cc81c44f {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.RNA-Seq.S7_L002_R1.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3596489598 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 f5fb6664-71c2-470c-b2f4-924a1a7f756b 9f525502f0de405e8dafc1678540eb6a {"aliquot_tag": "ALQ_3c63566a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.RNA-Seq.S7_L002_R2.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3925737100 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 5ce9ed2b-d5f6-4f16-bf27-ecb3979e86b6 00dea86402c5eaca648b0a6208290956 {"aliquot_tag": "ALQ_3c63566a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.RNA-Seq.transcriptome.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.transcriptome.gdc_realn.bam 6952487426 BAM transcriptome harmonized CPTAC3 02473551-0aca-4892-a62a-9b390a5f30f9 bfb51c91b6a15ec466e9eebd594c4b86 {"aliquot_tag": "ALQ_3c63566a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.WGS.Nbc C3L-05865 AML WGS buccal_normal CPT0449260002 CPT0449260002.WholeGenome.RP-2158.bam 53830159842 BAM submitted_aligned CPTAC3 ed660cc7-9c95-46db-a7b6-e7f274793a56 c17fecb51fff26afb9998e8235ce3bcf {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05865.WGS.Nbc.hg38 C3L-05865 AML WGS buccal_normal CPT0449260002 8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wgs_gdc_realn.bam 173847752393 BAM harmonized CPTAC3 e8d3fe3c-d407-4468-9c8b-10842bb7b3e9 6a53c23b6599e455a78e8546870b562c {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05865.WGS.Tbm C3L-05865 AML WGS tumor_bone_marrow CPT0449290002 CPT0449290002.WholeGenome.RP-2158.bam 45892108482 BAM submitted_aligned CPTAC3 28475d39-0b20-4433-9fda-0554d54ede2f 375a69c20d026559261908faae62fa0e {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.WGS.Tbm.hg38 C3L-05865 AML WGS tumor_bone_marrow CPT0449290002 4201cf72-9bd9-43dd-8023-0c74842dca1e_wgs_gdc_realn.bam 393744807400 BAM harmonized CPTAC3 76bd6c51-c345-4984-b88a-869c51ebd318 5a903907e0a7a894fc370db1d163fa69 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.WXS.Nbc C3L-05865 AML WXS buccal_normal CPT0449260002 CPT0449260002.WholeExome.RP-1303.bam 28624204950 BAM submitted_aligned CPTAC3 3f46ea96-6ccd-455b-ab41-d509788b9c8e 81207d87be9c3f9ce7060b53e0ce5bdb {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05865.WXS.Nbc.hg38 C3L-05865 AML WXS buccal_normal CPT0449260002 8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wxs_gdc_realn.bam 39006539162 BAM harmonized CPTAC3 31fed2ee-eb65-40c7-b0ec-29b6473228db af8fe10f20ac18fd48a60503086a6607 {"aliquot_tag": "ALQ_787f706f", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05865.WXS.Tbm C3L-05865 AML WXS tumor_bone_marrow CPT0449290002 CPT0449290002.WholeExome.RP-1303.bam 29931341938 BAM submitted_aligned CPTAC3 364a81a0-ab13-4ee3-ad14-4d1c621cf40a 00a9684c629eddbe935a180c0e83664c {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05865.WXS.Tbm.hg38 C3L-05865 AML WXS tumor_bone_marrow CPT0449290002 4201cf72-9bd9-43dd-8023-0c74842dca1e_wxs_gdc_realn.bam 41740398964 BAM harmonized CPTAC3 f4e40196-62f9-4115-b08c-47b632673cd4 20720c9aa3e6a7d767bd5571737ae8a0 {"aliquot_tag": "ALQ_fa2fe7be", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05866.MethArray.Green.Tbm C3L-05866 AML Methylation_Array tumor_bone_marrow CPT0451240002 205987780161_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 aaf98a92-0716-473c-99a3-fa111599a496 e0d44034d9a0bae06ac076e2d6210bc0 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.MethArray.Red.Tbm C3L-05866 AML Methylation_Array tumor_bone_marrow CPT0451240002 205987780161_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 eef6c535-778d-4a7a-a7cc-109068c24e3d 2a011f09b49881238a0485ad620c3936 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.miRNA-Seq.S18_L003_R1.Tbm C3L-05866 AML miRNA-Seq tumor_bone_marrow CPT0451250002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L003_R1_001.unaln.bam 230634784 BAM S18_L003_R1 submitted_unaligned CPTAC3 1d1e4f08-7ff7-4831-aef5-94022915383f 58f186a66317661e5dbc66e7de62bb2e {"aliquot_tag": "ALQ_c09a4446", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.miRNA-Seq.Tbm.hg38 C3L-05866 AML miRNA-Seq tumor_bone_marrow CPT0451250002 2a68617d-cd63-4f03-929a-fd45679d0951_mirnaseq_gdc_realn.bam 257254197 BAM harmonized CPTAC3 464a1f5b-d52d-41b8-9ad2-0e8bf2e2c421 339d43b1bb5173d66994b8a420fe48a2 {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.RNA-Seq.chimeric.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.chimeric.gdc_realn.bam 808584297 BAM chimeric harmonized CPTAC3 aac4f54e-e7b7-4697-afb4-736841e7de35 6488afa5eeb0f93b5560ee6998be117a {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.RNA-Seq.genomic.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.genomic.gdc_realn.bam 8707946437 BAM genomic harmonized CPTAC3 18803820-5eaf-4248-b491-a699c6669520 825eaed2786c1a6314f341c80ca78094 {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.RNA-Seq.S12_L003_R1.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 4253065889 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 2735ec95-31b1-4110-8556-01db4b0c338c 1cda48f7b97c3528e42e24b52ba633ac {"aliquot_tag": "ALQ_c09a4446", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.RNA-Seq.S12_L003_R2.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4647798540 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 e2f0fe12-3f34-44cf-ae20-f306271c6117 4c2a1ee079ca86476e187d1f5a9695c5 {"aliquot_tag": "ALQ_c09a4446", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.RNA-Seq.transcriptome.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.transcriptome.gdc_realn.bam 7000010384 BAM transcriptome harmonized CPTAC3 4207d626-8e02-43cc-a98a-7a710c5ee20d 1da4db97f6c56f3c48d7ff9b8d527d1d {"aliquot_tag": "ALQ_c09a4446", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.WGS.Nbc C3L-05866 AML WGS buccal_normal CPT0451210002 CPT0451210002.WholeGenome.RP-2158.bam 47738322998 BAM submitted_aligned CPTAC3 98b0bc7f-94df-4354-8178-0f971c172e70 a119642ec54632338654982223548a0e {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05866.WGS.Nbc.hg38 C3L-05866 AML WGS buccal_normal CPT0451210002 19892a7d-c8ad-42ac-879a-b59be77d2d74_wgs_gdc_realn.bam 140153318879 BAM harmonized CPTAC3 7f823e8f-f7ae-4cc6-a260-7e07843b534d 452dd5f9af97337ed394a0c0b8add9d4 {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05866.WGS.Tbm C3L-05866 AML WGS tumor_bone_marrow CPT0451240002 CPT0451240002.WholeGenome.RP-2158.bam 43651106968 BAM submitted_aligned CPTAC3 e5298e8c-8dc9-4b45-8742-28f3253748cb d2cc59c8ec5ed934d0e3f6c3e328f397 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.WGS.Tbm.hg38 C3L-05866 AML WGS tumor_bone_marrow CPT0451240002 ce3b7890-d847-48f9-9a91-32c20d88da64_wgs_gdc_realn.bam 131138287954 BAM harmonized CPTAC3 cabdf6e7-64e2-4429-87d0-7f95a3c9054f 6e30d7b3440aaefb7b9072c687042cee {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.WXS.Nbc C3L-05866 AML WXS buccal_normal CPT0451210002 CPT0451210002.WholeExome.RP-1303.bam 28472841764 BAM submitted_aligned CPTAC3 babe5e27-0c52-4d6d-aee4-cddb7e5d568a c450e6fa2547e2385af749060fcba3be {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05866.WXS.Nbc.hg38 C3L-05866 AML WXS buccal_normal CPT0451210002 19892a7d-c8ad-42ac-879a-b59be77d2d74_wxs_gdc_realn.bam 38675547780 BAM harmonized CPTAC3 a70ea14c-6e6b-46c1-b114-9c5ff9435f9d 3339246988c581a484c91a80c92d069f {"aliquot_tag": "ALQ_351ae286", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05866.WXS.Tbm C3L-05866 AML WXS tumor_bone_marrow CPT0451240002 CPT0451240002.WholeExome.RP-1303.bam 24467398848 BAM submitted_aligned CPTAC3 3d980cf3-af7a-4cc6-a27a-70a3e01c2a41 2d811b41469df90fff3e46d3d43386fb {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05866.WXS.Tbm.hg38 C3L-05866 AML WXS tumor_bone_marrow CPT0451240002 ce3b7890-d847-48f9-9a91-32c20d88da64_wxs_gdc_realn.bam 34067822652 BAM harmonized CPTAC3 e295b011-7109-42b0-acaf-10b6943fe584 09bba5944cb560ae05c1e305323ee981 {"aliquot_tag": "ALQ_fdfa6df6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05867.MethArray.Green.Tpb C3L-05867 AML Methylation_Array tumor_peripheral_blood CPT0370770002 205707890036_R01C01_Grn.idat 13677891 IDAT Green NA CPTAC3 0916660b-a28e-42cd-9b25-d3b9798fbcbd f35ba9f2fbb596f7399a215e0287f904 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.MethArray.Red.Tpb C3L-05867 AML Methylation_Array tumor_peripheral_blood CPT0370770002 205707890036_R01C01_Red.idat 13677891 IDAT Red NA CPTAC3 d9e62da0-1f16-4fe6-a6af-8f4ac3a850a8 d3681620640a0660cc45d861985aaaf5 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.miRNA-Seq.S46_L003_R1.Tpb C3L-05867 AML miRNA-Seq tumor_peripheral_blood CPT0370840002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACCGG_S46_L003_R1_001.unaln.bam 246960590 BAM S46_L003_R1 submitted_unaligned CPTAC3 67c46c83-ccdb-48f4-a359-ff6ee94808eb 6e0cfe30eed01acd032f2b6cfc67c3e9 {"aliquot_tag": "ALQ_dc522f90", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.miRNA-Seq.Tpb.hg38 C3L-05867 AML miRNA-Seq tumor_peripheral_blood CPT0370840002 fbed7997-b09b-4b58-9f46-2fcf829866fa_mirnaseq_gdc_realn.bam 275036928 BAM harmonized CPTAC3 7ddeb82c-ba74-4055-a9eb-7ad45e9fc215 5d98d89409a507e597ef90b2f97661d7 {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.RNA-Seq.chimeric.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.chimeric.gdc_realn.bam 539928665 BAM chimeric harmonized CPTAC3 fb7dda22-a61e-4ead-8acf-dc4aafb852b1 caaf6b1672e942a47b6b76d115e802f6 {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.RNA-Seq.genomic.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.genomic.gdc_realn.bam 7851265611 BAM genomic harmonized CPTAC3 045dd7e3-1afc-45d3-b4eb-9768b2a1476d d4f4585e941e54126baede66e0e09827 {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.RNA-Seq.S21_L006_R1.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R1_001.fastq.gz 3888735161 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 9f21ddc0-88a2-4e45-b9f7-326107a21ea6 97b184b2a03a08c0ef868644796cd3e9 {"aliquot_tag": "ALQ_dc522f90", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.RNA-Seq.S21_L006_R2.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R2_001.fastq.gz 4142355974 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 c8eed0e7-ba2c-41c5-880e-6db790f15b69 3192e02515f05d5c5419ec806ed13b3d {"aliquot_tag": "ALQ_dc522f90", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.RNA-Seq.transcriptome.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.transcriptome.gdc_realn.bam 6966938454 BAM transcriptome harmonized CPTAC3 91f7ccfb-cc6d-4fe8-a431-c5dbacf6df10 fc06a2b8c3b92f04fa13ca1ca566684e {"aliquot_tag": "ALQ_dc522f90", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.WGS.Tpb C3L-05867 AML WGS tumor_peripheral_blood CPT0370770002 CPT0370770002.WholeGenome.RP-2158.bam 49774987735 BAM submitted_aligned CPTAC3 b6f4f11c-e66c-4258-bd1c-720340c01195 1f2dd0e2eaf44df8798996eb55f7f12e {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.WGS.Tpb.hg38 C3L-05867 AML WGS tumor_peripheral_blood CPT0370770002 27e14fca-b7f7-43cd-9ffb-40bdb64c4eda_wgs_gdc_realn.bam 146166739322 BAM harmonized CPTAC3 2c55c877-04c4-4d6f-8029-7a108e397bd7 7d84467c93ce277b379e603ff0dd1ed9 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.WXS.Nbc C3L-05867 AML WXS buccal_normal CPT0370740002 CPT0370740002.WholeExome.RP-1303.bam 28258150421 BAM submitted_aligned CPTAC3 e804ee94-8c1c-4637-a3a1-085f3f6ad0fd a674f13102a0d25ddae2e19c3e0f8551 {"aliquot_tag": "ALQ_2d049d45", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05867.WXS.Nbc.hg38 C3L-05867 AML WXS buccal_normal CPT0370740002 4e0db17d-bd9e-405a-bb3f-f64d30b1941b_wxs_gdc_realn.bam 39048654846 BAM harmonized CPTAC3 e7f2cc73-9b6f-41b8-8e14-0c7e899a8792 2b92c60f98a881931d518c0e0b5bc170 {"aliquot_tag": "ALQ_2d049d45", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05867.WXS.Tpb C3L-05867 AML WXS tumor_peripheral_blood CPT0370770002 CPT0370770002.WholeExome.RP-1303.bam 31401698853 BAM submitted_aligned CPTAC3 0a1b5634-96bd-43db-9ca2-7429e819910d b49bbcbbf14292f838a01e924c703fd2 {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05867.WXS.Tpb.hg38 C3L-05867 AML WXS tumor_peripheral_blood CPT0370770002 27e14fca-b7f7-43cd-9ffb-40bdb64c4eda_wxs_gdc_realn.bam 43486815455 BAM harmonized CPTAC3 0f03f041-f06d-44f0-945e-95304337b255 65f794cf7b764f38792037897090605e {"aliquot_tag": "ALQ_6aa4e795", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05870.MethArray.Green.Tpb C3L-05870 AML Methylation_Array tumor_peripheral_blood CPT0299480002 205987780101_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 d663f9a3-012f-47c0-aa6f-a61892bf78ac cc02f2060fad2e305bc1564ef96b1f19 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.MethArray.Red.Tpb C3L-05870 AML Methylation_Array tumor_peripheral_blood CPT0299480002 205987780101_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 10136479-b2c2-4c85-80f5-cf86ede3abef 4b7ea46b63976f186993782731d4e76f {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.miRNA-Seq.S8_L001_R1.Tpb C3L-05870 AML miRNA-Seq tumor_peripheral_blood CPT0299490002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L001_R1_001.unaln.bam 297322755 BAM S8_L001_R1 submitted_unaligned CPTAC3 f5528fac-2f34-4b34-8e83-cde930e6b002 27ad27303513f0d3a618fe1d5227fb78 {"aliquot_tag": "ALQ_c46968f8", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.miRNA-Seq.Tpb.hg38 C3L-05870 AML miRNA-Seq tumor_peripheral_blood CPT0299490002 a609b8be-75a6-453a-be64-310778d43e7d_mirnaseq_gdc_realn.bam 318834538 BAM harmonized CPTAC3 b4d9aa79-4961-49e7-839d-a1bb40b34c3b a05d3dafc66583c0b843df56aa253cd2 {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.RNA-Seq.chimeric.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.chimeric.gdc_realn.bam 565129914 BAM chimeric harmonized CPTAC3 1e7b47a1-1f1f-489f-8414-87a727adaac3 a996b44194ede67e50b9339d04df4e7d {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.RNA-Seq.genomic.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.genomic.gdc_realn.bam 7739050522 BAM genomic harmonized CPTAC3 37f9bad3-cef9-4e03-93c7-9e3a80e43255 d4f5ed4dfb71c1421494f0beb3a94754 {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.RNA-Seq.S15_L004_R1.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R1_001.fastq.gz 3687678146 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 335a6971-98a0-48a8-9b22-caa10ab05757 3594aebbdeee63fe143c2e3399299a3c {"aliquot_tag": "ALQ_c46968f8", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.RNA-Seq.S15_L004_R2.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R2_001.fastq.gz 4012815314 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 e7c743d4-69ee-489c-a2be-d7fb39114b7d e1db27f7047d52bf28f0acca9eeb78a1 {"aliquot_tag": "ALQ_c46968f8", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.RNA-Seq.transcriptome.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.transcriptome.gdc_realn.bam 10214087384 BAM transcriptome harmonized CPTAC3 523a71be-9394-4a34-b2b6-9e3e995cc9cc 6e50ada7c022c8e01af037b234992788 {"aliquot_tag": "ALQ_c46968f8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.WGS.Nbc C3L-05870 AML WGS buccal_normal CPT0299470001 CPT0299470001.WholeGenome.RP-2158.bam 51225930203 BAM submitted_aligned CPTAC3 9ce86255-067f-4c22-86e1-ae563b2b7768 5fd19c6452fb39d456e4ffbfc15e8ab2 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05870.WGS.Nbc.hg38 C3L-05870 AML WGS buccal_normal CPT0299470001 5c8aba49-4460-440f-9963-1500cb52785a_wgs_gdc_realn.bam 157609906711 BAM harmonized CPTAC3 08dc064e-d5a3-417c-ac3a-562b88329bc9 a1fa81cb6cd95c0650a1f85938f57019 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05870.WGS.Tpb C3L-05870 AML WGS tumor_peripheral_blood CPT0299480002 CPT0299480002.WholeGenome.RP-2158.bam 54163145795 BAM submitted_aligned CPTAC3 32b41085-afc7-4c04-a7ce-f0a8fee7b20d b2fd29049c45d5369022b6cf21e70ff0 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.WGS.Tpb.hg38 C3L-05870 AML WGS tumor_peripheral_blood CPT0299480002 4db8c894-62ec-43e6-8e5a-65abb040a80e_wgs_gdc_realn.bam 154828999780 BAM harmonized CPTAC3 1bd4235b-e682-4fa9-a261-cc25ffa7dd04 ef7ffdd6258b40e2884896c919cbe417 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.WXS.Nbc C3L-05870 AML WXS buccal_normal CPT0299470001 CPT0299470001.WholeExome.RP-1303.bam 28810346186 BAM submitted_aligned CPTAC3 674393d7-a8e2-4adf-8bb2-de6642c75817 76aeb3c8e6e27ca75a07cae366415913 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05870.WXS.Nbc.hg38 C3L-05870 AML WXS buccal_normal CPT0299470001 5c8aba49-4460-440f-9963-1500cb52785a_wxs_gdc_realn.bam 39685880868 BAM harmonized CPTAC3 dde74b6b-38ea-4791-9571-2174d6ac026f 48905840634f8fd8094f070bc7ee3b89 {"aliquot_tag": "ALQ_e2508723", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05870.WXS.Tpb C3L-05870 AML WXS tumor_peripheral_blood CPT0299480002 CPT0299480002.WholeExome.RP-1303.bam 28751353934 BAM submitted_aligned CPTAC3 084ba04f-3465-40f2-8077-df152d385acd 0d1f3e1c9e3d078c7d3238b4b33e68e7 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05870.WXS.Tpb.hg38 C3L-05870 AML WXS tumor_peripheral_blood CPT0299480002 4db8c894-62ec-43e6-8e5a-65abb040a80e_wxs_gdc_realn.bam 39710169863 BAM harmonized CPTAC3 f808106f-0df8-4c92-8c51-506d15c9c8df 2a0007b790cd61f66a8104983b780516 {"aliquot_tag": "ALQ_f9094148", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05872.MethArray.Green.Tbm C3L-05872 AML Methylation_Array tumor_bone_marrow CPT0299550002 205555380136_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e8ecbe8f-806c-4269-920c-27e7c7905eb5 27b08dfec4a02760cf87a6b351674f03 {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.MethArray.Red.Tbm C3L-05872 AML Methylation_Array tumor_bone_marrow CPT0299550002 205555380136_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 18778619-dfe7-4d1d-99ee-55d68abbbe31 1c0c710439b0184fb30eedc72eb59be4 {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.miRNA-Seq.S15_L001_R1.Tbm C3L-05872 AML miRNA-Seq tumor_bone_marrow CPT0299560002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTCCGC_S15_L001_R1_001.unaln.bam 221909396 BAM S15_L001_R1 submitted_unaligned CPTAC3 b2822218-dfb1-4495-a31a-5f484576aae7 6bdca808694cc12622a21f0560432e19 {"aliquot_tag": "ALQ_8d652c8c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.miRNA-Seq.Tbm.hg38 C3L-05872 AML miRNA-Seq tumor_bone_marrow CPT0299560002 684f8faa-1992-4291-bcec-8ef42606eb2b_mirnaseq_gdc_realn.bam 236635548 BAM harmonized CPTAC3 c31c3204-1bd8-470f-9556-67ccf7f1196f 22f2cbcbe63308daafbb1003d2036ed9 {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.RNA-Seq.chimeric.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.chimeric.gdc_realn.bam 90254959 BAM chimeric harmonized CPTAC3 51c401f6-065b-418e-99f4-148e7d7dc7b3 7efe5c701a76d645ca5e021089b968cb {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.RNA-Seq.genomic.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.genomic.gdc_realn.bam 7085368824 BAM genomic harmonized CPTAC3 22f6067a-8cbf-45f8-8844-2120baad708f 79cf9d0cbc681f0d9f880da2b2a9aeac {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.RNA-Seq.S15_L004_R1.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3590502666 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 cf380f3c-caa7-43f8-bd19-f3f0fe913af7 17df40b59d7a08e29e07165ff1525871 {"aliquot_tag": "ALQ_8d652c8c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.RNA-Seq.S15_L004_R2.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 3840232436 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 3d5c0aaf-5d4e-44d6-b9d1-6aa6ab92911e b38c7157e30a191ad4ee51d3630819e0 {"aliquot_tag": "ALQ_8d652c8c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.RNA-Seq.transcriptome.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.transcriptome.gdc_realn.bam 11348680422 BAM transcriptome harmonized CPTAC3 45c3cdde-b881-49e4-be7d-f2d040f291bf c2d993fd975b8660f956fd5a742bd818 {"aliquot_tag": "ALQ_8d652c8c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.WGS.Nbc C3L-05872 AML WGS buccal_normal CPT0299540001 CPT0299540001.WholeGenome.RP-2158.bam 44668042889 BAM submitted_aligned CPTAC3 8d6c3dad-3d24-46c6-b2b0-b8148dd9029c 55107aadf6f456f5f27ef06e1fcf33c8 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05872.WGS.Nbc.hg38 C3L-05872 AML WGS buccal_normal CPT0299540001 344e5a94-a418-4792-9720-b4951cc25c7d_wgs_gdc_realn.bam 132424783599 BAM harmonized CPTAC3 64766b93-1829-4232-a292-eeaf37c967b9 513b998a04620925a1c9ee843ed7fd26 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05872.WGS.Tbm C3L-05872 AML WGS tumor_bone_marrow CPT0299550002 CPT0299550002.WholeGenome.RP-2158.bam 65145611148 BAM submitted_aligned CPTAC3 5f0dd23f-af53-473f-82d8-131bed8ce426 2c521f19fbd98eb9a0bd060e78967e6a {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.WGS.Tbm.hg38 C3L-05872 AML WGS tumor_bone_marrow CPT0299550002 d627fc82-0d74-405f-b841-0c0282413f6c_wgs_gdc_realn.bam 193350656603 BAM harmonized CPTAC3 571c510d-7fcc-40fd-8f1f-905375d8dfcc f3a8ee6bcd157cdbf2277317087498dc {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.WXS.Nbc C3L-05872 AML WXS buccal_normal CPT0299540001 CPT0299540001.WholeExome.RP-1303.bam 39958495658 BAM submitted_aligned CPTAC3 ce5dd2f4-8ecf-431f-bc06-813e32c5e4f6 25438bddf2548fc2eb5f04045d15a473 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05872.WXS.Nbc.hg38 C3L-05872 AML WXS buccal_normal CPT0299540001 344e5a94-a418-4792-9720-b4951cc25c7d_wxs_gdc_realn.bam 57205482721 BAM harmonized CPTAC3 2fec3d76-e6cd-476c-aede-afaae7821287 06d8ad300271ff98ba02905f3898bd57 {"aliquot_tag": "ALQ_6eac2e56", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05872.WXS.Tbm C3L-05872 AML WXS tumor_bone_marrow CPT0299550002 CPT0299550002.WholeExome.RP-1303.bam 23800262582 BAM submitted_aligned CPTAC3 316742a5-5a01-4e37-b907-a12468c9c8ee 41134a1402477ab0a880e2f83f59ecac {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05872.WXS.Tbm.hg38 C3L-05872 AML WXS tumor_bone_marrow CPT0299550002 d627fc82-0d74-405f-b841-0c0282413f6c_wxs_gdc_realn.bam 33646048565 BAM harmonized CPTAC3 e10bf2cb-d23a-45d4-92a5-13fc8d54d6a4 b87ee7ec87ee5e825b349b4c17b01c09 {"aliquot_tag": "ALQ_cac5565c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05874.MethArray.Green.Tbm C3L-05874 AML Methylation_Array tumor_bone_marrow CPT0299880002 205555390164_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 473885b2-a3b0-4716-9f2b-6e94a8279a83 0445a21c3396fc5666a409f292ea6b36 {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.MethArray.Red.Tbm C3L-05874 AML Methylation_Array tumor_bone_marrow CPT0299880002 205555390164_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 6ee176b1-e8ae-4959-84d0-60244e41b02c f2cf08a05f2f41af75fbf4b236cdf8ad {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.miRNA-Seq.S46_L008_R1.Tbm C3L-05874 AML miRNA-Seq tumor_bone_marrow CPT0299900002 210331_UNC31-K00269_0297_AHKCFKBBXY_CCAACA_S46_L008_R1_001.unaln.bam 157455040 BAM S46_L008_R1 submitted_unaligned CPTAC3 6cc0eb5a-6bdd-46cc-9d0d-be6c0313bcb9 133e36e3ff1fade413eb4ed89ac56887 {"aliquot_tag": "ALQ_75e71957", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05874.miRNA-Seq.Tbm.hg38 C3L-05874 AML miRNA-Seq tumor_bone_marrow CPT0299900002 66fb0711-c5e3-4ee7-a844-dcae58352448_mirnaseq_gdc_realn.bam 165903159 BAM harmonized CPTAC3 313f7a94-9ade-4c79-86d3-1a482c278d2e 3f9b57f9c2e3e7d335f032a731cdab4d {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05874.RNA-Seq.chimeric.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.chimeric.gdc_realn.bam 90498124 BAM chimeric harmonized CPTAC3 6ecbe16e-ea94-4c20-8dcd-4fd2b1f734a7 834a2bb21bfac2924ef8bed4f4f57807 {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.RNA-Seq.genomic.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.genomic.gdc_realn.bam 7951765513 BAM genomic harmonized CPTAC3 627dc136-b579-4f70-8f16-0c27da00d7ad b9d5a49eb7b9fd0f9a5cfda55cef4729 {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.RNA-Seq.S32_L008_R1.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R1_001.fastq.gz 3895130520 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 724820b5-bfc7-4b08-b081-3e10460c82b3 93270fca04acfc949828d906b6266215 {"aliquot_tag": "ALQ_75e71957", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05874.RNA-Seq.S32_L008_R2.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R2_001.fastq.gz 4072714684 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 d76b214f-5d5f-4269-b983-96f4841a00ec a25d3a8458db3bd884ef5031c44a787e {"aliquot_tag": "ALQ_75e71957", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05874.RNA-Seq.transcriptome.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.transcriptome.gdc_realn.bam 7482243214 BAM transcriptome harmonized CPTAC3 534d3605-15c3-4a49-a878-ed77087e1b53 c2671d8eb08e0c398f63f8e6e1ed6d80 {"aliquot_tag": "ALQ_75e71957", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.WGS.Tbm C3L-05874 AML WGS tumor_bone_marrow CPT0299880002 CPT0299880002.WholeGenome.RP-2158.bam 50602071277 BAM submitted_aligned CPTAC3 0c5b5cca-6d59-42d8-8eb7-5379440ad7e6 12b45d1508dc3973de051ac1ada0b96b {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.WGS.Tbm.hg38 C3L-05874 AML WGS tumor_bone_marrow CPT0299880002 3e8f3526-12f3-44d1-8385-aacd38c7e4d5_wgs_gdc_realn.bam 147517587331 BAM harmonized CPTAC3 8acf8a3b-8004-409a-a389-dc34d3e47e05 c175c02cc3834568c4ff187e07c59522 {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.WXS.Nbc C3L-05874 AML WXS buccal_normal CPT0299870002 CPT0299870002.WholeExome.RP-1303.bam 28940847826 BAM submitted_aligned CPTAC3 028485ff-d935-43f4-a07c-3a9ed446fd23 2772fd41ffcddee068cee90628275d48 {"aliquot_tag": "ALQ_c9b16e2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05874.WXS.Nbc.hg38 C3L-05874 AML WXS buccal_normal CPT0299870002 8002982b-3c17-4e2d-8b6a-eaeb500b3445_wxs_gdc_realn.bam 38857621750 BAM harmonized CPTAC3 7b352b43-0631-44ca-89b8-7501b3514e1b fa326497f32158f5afe7426c9c44ac64 {"aliquot_tag": "ALQ_c9b16e2", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05874.WXS.Tbm C3L-05874 AML WXS tumor_bone_marrow CPT0299880002 CPT0299880002.WholeExome.RP-1303.bam 26553985048 BAM submitted_aligned CPTAC3 c38af2a5-a196-4a6f-8d47-5b3f4a3e58f0 1e633c9d0658c1c5263f1f5351e6c032 {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05874.WXS.Tbm.hg38 C3L-05874 AML WXS tumor_bone_marrow CPT0299880002 3e8f3526-12f3-44d1-8385-aacd38c7e4d5_wxs_gdc_realn.bam 36548244942 BAM harmonized CPTAC3 2549eabf-0aad-43b3-995c-5b77eab0e11c 7a1f9c7114ca7a852fa85eff3f8b1b1e {"aliquot_tag": "ALQ_8ecb8133", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05877.MethArray.Green.Tbm C3L-05877 AML Methylation_Array tumor_bone_marrow CPT0300410002 205555390176_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e157f8f5-3784-44d7-a5a8-11ec582a405b 7273cbb5c1d2d3e94c48dd569b68a585 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.MethArray.Red.Tbm C3L-05877 AML Methylation_Array tumor_bone_marrow CPT0300410002 205555390176_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 fc79f61e-eafb-4880-8663-cb0e7f374a33 65183cf660f9d89b18e01af8d998a257 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.miRNA-Seq.S16_L001_R1.Tbm C3L-05877 AML miRNA-Seq tumor_bone_marrow CPT0300420002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGAAA_S16_L001_R1_001.unaln.bam 538259579 BAM S16_L001_R1 submitted_unaligned CPTAC3 d985a552-5580-4618-bf91-a8c489e822c3 dde7e98dbe2b5d47c676778ec543dc89 {"aliquot_tag": "ALQ_2e151352", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.miRNA-Seq.Tbm.hg38 C3L-05877 AML miRNA-Seq tumor_bone_marrow CPT0300420002 b145f9ab-8a81-443b-a1b2-47cafef2afc1_mirnaseq_gdc_realn.bam 598586366 BAM harmonized CPTAC3 3a3d70e1-02b0-4b5b-b620-bf1c1a42b9fb 10a0bf31b3382dec61a0d27392d86682 {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.RNA-Seq.chimeric.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.chimeric.gdc_realn.bam 95914183 BAM chimeric harmonized CPTAC3 c6b46c3b-f883-40e6-b36c-17799430d838 f460290a35bdca16a7e234c97e78aab7 {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.RNA-Seq.genomic.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.genomic.gdc_realn.bam 8493804982 BAM genomic harmonized CPTAC3 811187db-7a30-4df9-8bc0-063fd9718ba5 ed717222ca6dffc974ad8c80059f49b2 {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.RNA-Seq.S16_L004_R1.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4322192784 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 0f08c20b-f789-48d8-9a67-35b47b3e3930 93226a1a4e570826af5be793a626af83 {"aliquot_tag": "ALQ_2e151352", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.RNA-Seq.S16_L004_R2.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 4568649533 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 d80143d6-e2d1-4d5a-9c37-43b0e76a67c0 394665b594096905233756679677aff8 {"aliquot_tag": "ALQ_2e151352", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.RNA-Seq.transcriptome.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.transcriptome.gdc_realn.bam 11111923760 BAM transcriptome harmonized CPTAC3 97871066-6a83-4d6f-823f-17c4229419f8 3c6765f0176926c7e0d856a1072d1bab {"aliquot_tag": "ALQ_2e151352", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.WGS.Nbc C3L-05877 AML WGS buccal_normal CPT0300380003 CPT0300380003.WholeGenome.RP-2158.bam 73278017097 BAM submitted_aligned CPTAC3 392b0e5a-bfad-4790-83f1-b7d6c55783b0 4284588575c6f4fcffc6eef05e4637b2 {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05877.WGS.Nbc.hg38 C3L-05877 AML WGS buccal_normal CPT0300380003 ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wgs_gdc_realn.bam 237016842730 BAM harmonized CPTAC3 0dcc0454-f17b-4951-9437-ff2891e22852 d952a5e4dad47940118d15c236d64ed9 {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05877.WGS.Tbm C3L-05877 AML WGS tumor_bone_marrow CPT0300410002 CPT0300410002.WholeGenome.RP-2158.bam 45583207743 BAM submitted_aligned CPTAC3 e5b2f66c-ede3-4385-8747-3ff8dbfa7917 a39f6ae085feb0c1b9dff73140697a73 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.WGS.Tbm.hg38 C3L-05877 AML WGS tumor_bone_marrow CPT0300410002 96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wgs_gdc_realn.bam 130777638996 BAM harmonized CPTAC3 b158bbad-df67-4297-970f-9186bbc0a2bd db1c733e0bf65c1a1927d7303fbc8213 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.WXS.Nbc C3L-05877 AML WXS buccal_normal CPT0300380003 CPT0300380003.WholeExome.RP-1303.bam 23920575621 BAM submitted_aligned CPTAC3 02882d65-c171-4e21-aed0-44c7c82a6008 bff7edb67703573b0b77b9e5c6ec3f20 {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05877.WXS.Nbc.hg38 C3L-05877 AML WXS buccal_normal CPT0300380003 ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wxs_gdc_realn.bam 33591352662 BAM harmonized CPTAC3 ab66af5d-bf06-4441-ab13-d8941065731f ee5598b6bc871bc093356e595ad1704c {"aliquot_tag": "ALQ_ea70bdd", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05877.WXS.Tbm C3L-05877 AML WXS tumor_bone_marrow CPT0300410002 CPT0300410002.WholeExome.RP-1303.bam 25233163926 BAM submitted_aligned CPTAC3 f80cf357-9169-43ef-980d-4201e32386bd e2b258fd6c41f95da4e318faea47aef7 {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05877.WXS.Tbm.hg38 C3L-05877 AML WXS tumor_bone_marrow CPT0300410002 96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wxs_gdc_realn.bam 34726300762 BAM harmonized CPTAC3 e37b97d2-8631-476e-9356-94c4ed5a2785 37924b3fc45cb0257b150ab5756e6a9d {"aliquot_tag": "ALQ_69b56982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05880.MethArray.Green.Tbm C3L-05880 AML Methylation_Array tumor_bone_marrow CPT0343660002 205705520128_R05C01_Grn.idat 13677886 IDAT Green NA CPTAC3 db487083-b57b-44bd-863a-0c0afc2c8766 b80a5e94471a21e81a5ca16352d3e8be {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05880.MethArray.Red.Tbm C3L-05880 AML Methylation_Array tumor_bone_marrow CPT0343660002 205705520128_R05C01_Red.idat 13677886 IDAT Red NA CPTAC3 8a3bc2a3-a42f-4abc-bfba-1cc5fea9f305 811fb81758674757f75e43b0e4f18b33 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05880.miRNA-Seq.S41_L002_R1.Tpb C3L-05880 AML miRNA-Seq tumor_peripheral_blood CPT0343710002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAGCTT_S41_L002_R1_001.unaln.bam 249996798 BAM S41_L002_R1 submitted_unaligned CPTAC3 c0eb52b8-a6cf-47eb-aa2a-ceb62c501f44 1db5139b3fb96e3cea45b29e9c25b656 {"aliquot_tag": "ALQ_5a830f4b", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05880.miRNA-Seq.Tpb.hg38 C3L-05880 AML miRNA-Seq tumor_peripheral_blood CPT0343710002 e94c6558-3883-4094-92e7-ddf7d0c1be51_mirnaseq_gdc_realn.bam 274397735 BAM harmonized CPTAC3 e6ddd38d-286a-4403-9598-82592ed346bd 8d22ecc967fd8204e88f35ee29a195ab {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05880.RNA-Seq.chimeric.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.chimeric.gdc_realn.bam 562165773 BAM chimeric harmonized CPTAC3 3e030377-1cda-4d8a-8aec-02f2e2bceeca 765063a50b9d90ea286aa0c452027fad {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05880.RNA-Seq.genomic.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.genomic.gdc_realn.bam 8383882658 BAM genomic harmonized CPTAC3 58d498d3-e490-4480-80c7-e26b409670e0 851dd42e0c3136ca4c74031386f32ce8 {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05880.RNA-Seq.S4_L001_R1.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4087361180 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 b341d34c-1191-4519-a1ff-d26521ec8bfd 8e103f659385c88c2c189ebbab40e313 {"aliquot_tag": "ALQ_5a830f4b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05880.RNA-Seq.S4_L001_R2.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4475045150 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 cbbd3158-1f70-48a7-8e50-fda147c3d932 d372ecf04918026a82aa1d458bba9f0e {"aliquot_tag": "ALQ_5a830f4b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05880.RNA-Seq.transcriptome.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.transcriptome.gdc_realn.bam 8431042806 BAM transcriptome harmonized CPTAC3 6b51d865-9099-4514-920b-d0183b4755f6 5af10675be88a7026e513b61e4c64642 {"aliquot_tag": "ALQ_5a830f4b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05880.WGS.Nbc C3L-05880 AML WGS buccal_normal CPT0343630001 CPT0343630001.WholeGenome.RP-2158.bam 45938618882 BAM submitted_aligned CPTAC3 e97060ef-1878-491a-8cbf-ec4cbaf6ea17 0385e20bb144f68f4f93172ed57a4233 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05880.WGS.Nbc.hg38 C3L-05880 AML WGS buccal_normal CPT0343630001 23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wgs_gdc_realn.bam 137911406384 BAM harmonized CPTAC3 a4668566-e4f8-46a6-af3b-1879baa49290 1639cd6f1c5e443f97f9fde0f0953380 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05880.WGS.Tbm C3L-05880 AML WGS tumor_bone_marrow CPT0343660002 CPT0343660002.WholeGenome.RP-2158.bam 43608083287 BAM submitted_aligned CPTAC3 5efce9a8-9fe1-4e06-b4cb-03cbb9316d37 706b725b75681bb85433f4f0345b3d38 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05880.WGS.Tbm.hg38 C3L-05880 AML WGS tumor_bone_marrow CPT0343660002 0ba49a29-a850-46e3-8379-1375fe76413d_wgs_gdc_realn.bam 132428942056 BAM harmonized CPTAC3 bf8ecffe-50b1-4149-9c3e-294b32a0e7a3 4699499528d125cd7c6b9d0f31e87b80 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05880.WXS.Nbc C3L-05880 AML WXS buccal_normal CPT0343630001 CPT0343630001.WholeExome.RP-1303.bam 28024817314 BAM submitted_aligned CPTAC3 93137e3b-52cb-4c56-96a9-022e90a326cd 34a6a2b7f567c2f7eb80e0ea0048a1d1 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05880.WXS.Nbc.hg38 C3L-05880 AML WXS buccal_normal CPT0343630001 23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wxs_gdc_realn.bam 111884501127 BAM harmonized CPTAC3 7d7b0de8-3536-4785-af8d-c428b67982f7 ff24cba4c7c5839a0e28da74d4bdfd27 {"aliquot_tag": "ALQ_7216de34", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05880.WXS.Tbm C3L-05880 AML WXS tumor_bone_marrow CPT0343660002 CPT0343660002.WholeExome.RP-1303.bam 25354727637 BAM submitted_aligned CPTAC3 ade04ecf-df99-462e-9be4-483b2676fbd1 f4726ac141683ab7a3ba63e72c9abb90 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05880.WXS.Tbm.hg38 C3L-05880 AML WXS tumor_bone_marrow CPT0343660002 0ba49a29-a850-46e3-8379-1375fe76413d_wxs_gdc_realn.bam 35030256301 BAM harmonized CPTAC3 5f8c7af6-b9f4-4da1-a2a4-550334839d0c e803650a6b8db4dca6e7b8215ab4f3d3 {"aliquot_tag": "ALQ_23ff00fe", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05884.MethArray.Green.Tbm C3L-05884 AML Methylation_Array tumor_bone_marrow CPT0416170002 205555390176_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 26062768-13ac-4540-bb9e-0770d6cd6e16 2eaa685a4e19e074ce676dd844dd0463 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.MethArray.Red.Tbm C3L-05884 AML Methylation_Array tumor_bone_marrow CPT0416170002 205555390176_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 554c6733-71c7-413e-8e0e-e41933d379fb 649eeceefe86fd80ce3d50d5dd1348fb {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.miRNA-Seq.S25_L005_R1.Tbm C3L-05884 AML miRNA-Seq tumor_bone_marrow CPT0410270002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAAAAG_S25_L005_R1_001.unaln.bam 259279400 BAM S25_L005_R1 submitted_unaligned CPTAC3 ece75779-0591-493a-a008-b0e44b5c8801 dd85e637834aa64e8c81ec1e55e113d5 {"aliquot_tag": "ALQ_98671268", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.miRNA-Seq.Tbm.hg38 C3L-05884 AML miRNA-Seq tumor_bone_marrow CPT0410270002 d266b58a-aaf7-483e-ba4c-f58f03fd16b1_mirnaseq_gdc_realn.bam 267008417 BAM harmonized CPTAC3 515661e9-b67c-40a9-9b07-60d7bb0691a6 6305f95994af72e9ecfc5157f24b245f {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.RNA-Seq.chimeric.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.chimeric.gdc_realn.bam 274586316 BAM chimeric harmonized CPTAC3 f7cd5186-e552-4888-9335-546fa57300a4 a7ef4ac5b4d89b84ad5c03ba7ba989d7 {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.RNA-Seq.genomic.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.genomic.gdc_realn.bam 8114158812 BAM genomic harmonized CPTAC3 ca2d8f30-3dd9-4088-a068-75cde7b04001 776f36bbff6c7587ad3f9d4dd30cc411 {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.RNA-Seq.S7_L002_R1.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3984639573 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 68dcca5d-e353-4166-a863-6f0b745448c0 62939176466561a117f3d737114960c9 {"aliquot_tag": "ALQ_98671268", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.RNA-Seq.S7_L002_R2.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4205384530 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 c8974040-12ad-4bea-901a-dfa36fb0c963 31c6a9ad23024234e290ae11e0bc287e {"aliquot_tag": "ALQ_98671268", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.RNA-Seq.transcriptome.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.transcriptome.gdc_realn.bam 9025722159 BAM transcriptome harmonized CPTAC3 5dd70628-a742-4ef2-a3c2-cd3db83a1719 da41fd6496c0e045f34361a2344b7f64 {"aliquot_tag": "ALQ_98671268", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.WGS.Nbc C3L-05884 AML WGS buccal_normal CPT0410240001 CPT0410240001.WholeGenome.RP-2158.bam 52970046234 BAM submitted_aligned CPTAC3 ac4a2f44-2a60-414f-ad33-979c9b693cc7 b0804b58c63f738cb19d34a12869189a {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05884.WGS.Nbc.hg38 C3L-05884 AML WGS buccal_normal CPT0410240001 5cf52825-963d-462b-b1a5-d9f20ddd0070_wgs_gdc_realn.bam 157604592406 BAM harmonized CPTAC3 0872d590-4c7c-4270-879e-d60630f04982 36404f2eb4000f5b9375a5c9e24c54c0 {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05884.WGS.Tbm C3L-05884 AML WGS tumor_bone_marrow CPT0416170002 CPT0416170002.WholeGenome.RP-2158.bam 52579579721 BAM submitted_aligned CPTAC3 6eee2d82-7cd4-4b6e-8721-2b9296770ae1 8bf8b7629f17525205c23073950630f5 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.WGS.Tbm.hg38 C3L-05884 AML WGS tumor_bone_marrow CPT0416170002 7ef878e6-9ca3-40d7-9948-5af073b483f5_wgs_gdc_realn.bam 157014991953 BAM harmonized CPTAC3 766dc870-eef3-4df7-88ef-16e5b7950943 2b276f0b6b03b420e43e60d07a985677 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.WXS.Nbc C3L-05884 AML WXS buccal_normal CPT0410240001 CPT0410240001.WholeExome.RP-1303.bam 34539110903 BAM submitted_aligned CPTAC3 297d0f49-87d8-4d49-8009-ed43f5060936 73fadc7f34b6dc123efda1c52ceb0a82 {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05884.WXS.Nbc.hg38 C3L-05884 AML WXS buccal_normal CPT0410240001 5cf52825-963d-462b-b1a5-d9f20ddd0070_wxs_gdc_realn.bam 47895435122 BAM harmonized CPTAC3 16ae679b-5354-4ed5-abe4-a1b9d49a4ffc db1fc0abfbbe7525f93371a3100e82f0 {"aliquot_tag": "ALQ_46ce3902", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05884.WXS.Tbm C3L-05884 AML WXS tumor_bone_marrow CPT0416170002 CPT0416170002.WholeExome.RP-1303.bam 21172512346 BAM submitted_aligned CPTAC3 fcd1719c-523a-4882-aee4-791ad923ae38 88553345bc46a1690edf868b29cb65a0 {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05884.WXS.Tbm.hg38 C3L-05884 AML WXS tumor_bone_marrow CPT0416170002 7ef878e6-9ca3-40d7-9948-5af073b483f5_wxs_gdc_realn.bam 29114913369 BAM harmonized CPTAC3 53aff95c-11f2-407f-91cd-b594b0e4eed0 4312ad4496e9981125ad0c2b4b4afb5a {"aliquot_tag": "ALQ_7d2355fc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05887.MethArray.Green.Tbm C3L-05887 AML Methylation_Array tumor_bone_marrow CPT0344020002 205555380130_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8fa05f50-37b2-4976-bd96-19e88168416b f18a9c399b4cdc09565411f9024a59d4 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.MethArray.Red.Tbm C3L-05887 AML Methylation_Array tumor_bone_marrow CPT0344020002 205555380130_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 6c628ba7-fbc9-497c-b103-7a150597a42b 6a439e29d6db2bebddc0b902ba327f17 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.miRNA-Seq.S18_L007_R1.Tbm C3L-05887 AML miRNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATCACG_S18_L007_R1_001.unaln.bam 193470977 BAM S18_L007_R1 submitted_unaligned CPTAC3 2d51281b-bc35-4ccb-bf8b-195d9ade30da 38860a635cf41ea7ec0ff2585fcd9278 {"aliquot_tag": "ALQ_f8e1521d", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.miRNA-Seq.Tbm.hg38 C3L-05887 AML miRNA-Seq tumor_bone_marrow CPT0344030002 9b149e38-d608-4826-a301-8b9a196f1afe_mirnaseq_gdc_realn.bam 216131313 BAM harmonized CPTAC3 90d8bca0-a5e8-4bf0-9fa1-caed8a536090 ce92fc22db59781456f3ff506bc7752a {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.RNA-Seq.chimeric.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.chimeric.gdc_realn.bam 177205301 BAM chimeric harmonized CPTAC3 9926bedc-dc36-4638-90a4-0128dd01e37a a4ca867a9073af76fbf8d96d29fd3702 {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.RNA-Seq.genomic.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.genomic.gdc_realn.bam 8302648692 BAM genomic harmonized CPTAC3 453d0933-20e4-49f2-bf23-58a8cee9ae66 85b144fe7c1e19a5b680913575270136 {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.RNA-Seq.S10_L003_R1.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R1_001.fastq.gz 4098545183 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 69cc26b8-f6df-4410-85ad-9a0e45e0eed5 81b9de924ff1bb223452fff46a8e455a {"aliquot_tag": "ALQ_f8e1521d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.RNA-Seq.S10_L003_R2.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R2_001.fastq.gz 4435158903 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 e5b69001-5416-4cab-895c-b6bb1a523790 10ac98d658134219ef95ef5fcd6135c7 {"aliquot_tag": "ALQ_f8e1521d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.RNA-Seq.transcriptome.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.transcriptome.gdc_realn.bam 8518621754 BAM transcriptome harmonized CPTAC3 dac03f68-48de-4c24-ab45-ef73ba5aa881 7056c2fc95917d8e65ac4f3215e25664 {"aliquot_tag": "ALQ_f8e1521d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.WGS.Nbc C3L-05887 AML WGS buccal_normal CPT0343990003 CPT0343990003.WholeGenome.RP-2158.bam 59829704757 BAM submitted_aligned CPTAC3 aece0829-7aa7-4283-b47a-97f18923d4fb d04ce4119c61d4eb5d27013e08132225 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05887.WGS.Nbc.hg38 C3L-05887 AML WGS buccal_normal CPT0343990003 e28e0b54-03a7-4cfb-b77b-447b8646961a_wgs_gdc_realn.bam 187159088869 BAM harmonized CPTAC3 dbebe5b3-751c-418b-92ca-7a2e95782be0 5065635ce4c5a9e009ecbc138cb83159 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05887.WGS.Tbm C3L-05887 AML WGS tumor_bone_marrow CPT0344020002 CPT0344020002.WholeGenome.RP-2158.bam 55879978478 BAM submitted_aligned CPTAC3 c5d7acde-7e40-4e56-a7b5-9604704a1b6e db6f4bc762d8fa375f9607dcd90de010 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.WGS.Tbm.hg38 C3L-05887 AML WGS tumor_bone_marrow CPT0344020002 236e12c7-1408-4460-acaa-69762ebc953a_wgs_gdc_realn.bam 155566422748 BAM harmonized CPTAC3 4e4e94e7-8082-469d-a621-8f506bead92f af151ea252421799aa36a264200d5f30 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.WXS.Nbc C3L-05887 AML WXS buccal_normal CPT0343990003 CPT0343990003.WholeExome.RP-1303.bam 24906983293 BAM submitted_aligned CPTAC3 6549b58f-7999-48bd-a67f-44a333f9d559 2a231e89c8745bcb249d1bdf4a9ede82 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05887.WXS.Nbc.hg38 C3L-05887 AML WXS buccal_normal CPT0343990003 e28e0b54-03a7-4cfb-b77b-447b8646961a_wxs_gdc_realn.bam 34770032401 BAM harmonized CPTAC3 b508e0fe-9f8a-4166-9bc8-70df9fac94df 2264cd40a23b775f56368219abfa7a67 {"aliquot_tag": "ALQ_27fe156c", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05887.WXS.Tbm C3L-05887 AML WXS tumor_bone_marrow CPT0344020002 CPT0344020002.WholeExome.RP-1303.bam 23595760543 BAM submitted_aligned CPTAC3 d6906cac-a265-45e7-99ef-fda4278f7596 c9f3392331ddc3c0027ed0684f3cfe86 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05887.WXS.Tbm.hg38 C3L-05887 AML WXS tumor_bone_marrow CPT0344020002 236e12c7-1408-4460-acaa-69762ebc953a_wxs_gdc_realn.bam 32462973279 BAM harmonized CPTAC3 f7cf2849-de68-4c42-bb9c-30885885427c 133bc384fe440b5811ec19a1bffb3138 {"aliquot_tag": "ALQ_c5817bad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05888.MethArray.Green.Tbm C3L-05888 AML Methylation_Array tumor_bone_marrow CPT0344130001 205555390118_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 93548594-151d-4fe5-a200-5d4dbaa21bc1 52d275c4d6579b22cc0f27e06d3b01f0 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.MethArray.Red.Tbm C3L-05888 AML Methylation_Array tumor_bone_marrow CPT0344130001 205555390118_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 c5dcb4df-4818-4a13-9820-a4e03d5eb965 ca748f441f98f11646ecf22b88eb3190 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.miRNA-Seq.S21_L007_R1.Tbm C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGATGT_S21_L007_R1_001.unaln.bam 107475845 BAM S21_L007_R1 submitted_unaligned CPTAC3 a9f21010-4951-4bcd-a908-3fa8d3372c06 4c1993b198ba4c93a1934fb022c4aee8 {"aliquot_tag": "ALQ_819d5da8", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.miRNA-Seq.S27_L003_R1.Tbm C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 210817_UNC31-K00269_0302_AHLCTHBBXY_CGATGT_S27_L003_R1_001.unaln.bam 47475062 BAM S27_L003_R1 submitted_unaligned CPTAC3 7ae09ad9-91b7-4dca-96bb-73a58d23a637 7d507f10b8460b2df0c9cf931bf2a363 {"aliquot_tag": "ALQ_819d5da8", "sample": "S27", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.miRNA-Seq.Tbm.hg38 C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 9f6aa56e-d054-4626-ab28-d613470fb235_mirnaseq_gdc_realn.bam 176929130 BAM harmonized CPTAC3 5b9cb0d5-33f9-4e82-bbbc-54262cf588db f1444b2ccd0d6451d9c36577d96f3e12 {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.RNA-Seq.chimeric.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.chimeric.gdc_realn.bam 98687771 BAM chimeric harmonized CPTAC3 7b2e37dc-8e9b-4dc3-bb36-64b15babf26f e3f627078fc44999538fa3ebb1e02036 {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.RNA-Seq.genomic.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.genomic.gdc_realn.bam 9110093573 BAM genomic harmonized CPTAC3 b33c67d4-8d2c-44c8-bcd4-b7bafe7ffc5c ea90f2ba15f800db972acea58ff404cc {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.RNA-Seq.S12_L003_R1.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R1_001.fastq.gz 4554756978 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 7cdc741d-0a64-4e81-938a-cc4297d7cc3d 4d9f4f4c5d6fd2933764191b6e9d0b46 {"aliquot_tag": "ALQ_819d5da8", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.RNA-Seq.S12_L003_R2.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R2_001.fastq.gz 4720793096 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 0b44d08b-a40e-42d2-a682-ace4760bc581 4c93ac8f4e41ad86da0c6d0966149b21 {"aliquot_tag": "ALQ_819d5da8", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.RNA-Seq.transcriptome.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.transcriptome.gdc_realn.bam 10909949892 BAM transcriptome harmonized CPTAC3 e8c92412-d60d-4cc5-9510-712b95caa8eb 22090b72327e81cadf8159c9360c5c1a {"aliquot_tag": "ALQ_819d5da8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.WGS.Nbc C3L-05888 AML WGS buccal_normal CPT0344100003 CPT0344100003.WholeGenome.RP-2158.bam 56984619726 BAM submitted_aligned CPTAC3 b4903282-c4db-474e-9110-45a35b5b4b7c 85fc05e6e39ef5b064f5bedcab5e33fe {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05888.WGS.Nbc.hg38 C3L-05888 AML WGS buccal_normal CPT0344100003 5aa5467c-5b5b-4942-9207-8575275e8d48_wgs_gdc_realn.bam 189300363263 BAM harmonized CPTAC3 6c758b3c-100a-4699-abc1-60fea47b26ce f9b3faf73e0fd62cd286dd42f5c593bc {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05888.WGS.Tbm C3L-05888 AML WGS tumor_bone_marrow CPT0344130001 CPT0344130001.WholeGenome.RP-2158.bam 46138978226 BAM submitted_aligned CPTAC3 3b2c9000-4fbf-4f8f-be46-ddf9b76855aa 6306b769541ca36162c8e78e2c964931 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.WGS.Tbm.hg38 C3L-05888 AML WGS tumor_bone_marrow CPT0344130001 8fbfc62b-debd-49af-a0d1-0d1f015896af_wgs_gdc_realn.bam 134774007299 BAM harmonized CPTAC3 1d979e9f-8895-43ac-b026-82da5d317b60 c7c92377aae5fb976e6e6286dbf8d09b {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.WXS.Nbc C3L-05888 AML WXS buccal_normal CPT0344100003 CPT0344100003.WholeExome.RP-1303.bam 22845821003 BAM submitted_aligned CPTAC3 4f3dd907-1eb6-4fb6-8186-8b580bd4b3ce 163f6b5e42d9142691bd94d1d92459fe {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05888.WXS.Nbc.hg38 C3L-05888 AML WXS buccal_normal CPT0344100003 5aa5467c-5b5b-4942-9207-8575275e8d48_wxs_gdc_realn.bam 32066544877 BAM harmonized CPTAC3 e5726129-0842-47aa-a1c1-7b866092f086 c8032247874bbc98e5b4fe75810a9948 {"aliquot_tag": "ALQ_31acbfe", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05888.WXS.Tbm C3L-05888 AML WXS tumor_bone_marrow CPT0344130001 CPT0344130001.WholeExome.RP-1303.bam 41583876317 BAM submitted_aligned CPTAC3 b0507209-4ead-4d97-b1ef-e6037ded7471 bafbf9c2ba7f6532c678bccd4c402891 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05888.WXS.Tbm.hg38 C3L-05888 AML WXS tumor_bone_marrow CPT0344130001 8fbfc62b-debd-49af-a0d1-0d1f015896af_wxs_gdc_realn.bam 57687022271 BAM harmonized CPTAC3 8ac69ed6-88e0-4fc5-bb80-03714c5ae76a 009ba6d960a2ebacc99ef16030ff5619 {"aliquot_tag": "ALQ_aab4d002", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05889.MethArray.Green.Tbm C3L-05889 AML Methylation_Array tumor_bone_marrow CPT0344240001 205555380155_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e3e36f13-811f-43e2-9902-1c2fc7694830 57a3bdcb111fe7dc8635f0bf00d18250 {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.MethArray.Red.Tbm C3L-05889 AML Methylation_Array tumor_bone_marrow CPT0344240001 205555380155_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 2587bcea-0a81-42a8-94ef-1c6575715cf1 83a924b53713edf27cce508d1734b21d {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.miRNA-Seq.S34_L007_R1.Tbm C3L-05889 AML miRNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC31-K00269_0297_AHKCFKBBXY_TTAGGC_S34_L007_R1_001.unaln.bam 214214974 BAM S34_L007_R1 submitted_unaligned CPTAC3 e8b05e41-7a98-43c6-94ce-ca49bc2f83bd fedef13de375c31edcd2fd96fe2e624e {"aliquot_tag": "ALQ_d30aa383", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.miRNA-Seq.Tbm.hg38 C3L-05889 AML miRNA-Seq tumor_bone_marrow CPT0344250004 1ffb7470-979b-4aed-a21a-464fd01c9e51_mirnaseq_gdc_realn.bam 241326816 BAM harmonized CPTAC3 99db0a4c-ffc9-4dfc-9846-df166800e32c 0e4a2caaf68a917a5d9f2ba6d2f9136d {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.RNA-Seq.chimeric.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.chimeric.gdc_realn.bam 115997486 BAM chimeric harmonized CPTAC3 695a9b47-346e-4430-847e-34853535f1c1 4d31b557bb3ca1c653e5c8d3c08514b4 {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.RNA-Seq.genomic.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.genomic.gdc_realn.bam 8120164666 BAM genomic harmonized CPTAC3 783b6efd-67bd-4ad8-867c-c32baf366ccb d7f6a18d3c8471cde0fcbbf26974e3ef {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.RNA-Seq.S11_L003_R1.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R1_001.fastq.gz 3804400016 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 334cd644-7914-4240-bced-4eb5fd48ef08 ffcbc782ad65a4cf154efc95b538d14a {"aliquot_tag": "ALQ_d30aa383", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.RNA-Seq.S11_L003_R2.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R2_001.fastq.gz 4114619098 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 a1e0bf27-ddd9-4980-adaa-d01489605419 425412d8183c7db1862c5689d26e956e {"aliquot_tag": "ALQ_d30aa383", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.RNA-Seq.transcriptome.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.transcriptome.gdc_realn.bam 10451315422 BAM transcriptome harmonized CPTAC3 85abfcd6-3476-4a75-85e8-5da8f9595e76 9de2b127c1eacf0d9759bccd80d56c6c {"aliquot_tag": "ALQ_d30aa383", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.WGS.Nbc C3L-05889 AML WGS buccal_normal CPT0344210003 CPT0344210003.WholeGenome.RP-2158.bam 53373503728 BAM submitted_aligned CPTAC3 91a40314-1818-417e-8631-3d97bc4049d5 2075e9393b0c60da259498ba6af2fc31 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05889.WGS.Nbc.hg38 C3L-05889 AML WGS buccal_normal CPT0344210003 9ac06998-0508-4229-bdbe-f688ad33ec5d_wgs_gdc_realn.bam 168276376890 BAM harmonized CPTAC3 da5f49f1-d186-45bd-915a-227329e8b998 3c7048f8246619385ccf4fb70717fcc7 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05889.WGS.Tbm C3L-05889 AML WGS tumor_bone_marrow CPT0344240001 CPT0344240001.WholeGenome.RP-2158.bam 49260815248 BAM submitted_aligned CPTAC3 6e682bdc-e761-493b-935f-3a033a66e4e3 c43091dc3fc201ada51c5e1e9a1a154a {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.WGS.Tbm.hg38 C3L-05889 AML WGS tumor_bone_marrow CPT0344240001 91a44851-93b5-4106-a7d2-43bfd9061fdd_wgs_gdc_realn.bam 148289296675 BAM harmonized CPTAC3 75ed27c4-40d0-4082-9acf-9a19fd96b6df a7f547fb69ebdc034b0cdce310403293 {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.WXS.Nbc C3L-05889 AML WXS buccal_normal CPT0344210003 CPT0344210003.WholeExome.RP-1303.bam 25660371616 BAM submitted_aligned CPTAC3 c6bb4c53-60d2-4c66-9b6d-9e793b6652ae 782fcd28bad6d618a1ae51bdb964f778 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05889.WXS.Nbc.hg38 C3L-05889 AML WXS buccal_normal CPT0344210003 9ac06998-0508-4229-bdbe-f688ad33ec5d_wxs_gdc_realn.bam 35893960347 BAM harmonized CPTAC3 a1688311-f146-494c-8e4e-49a7a3ded2e4 d2c428d6ee3c9c527fceb588daad7858 {"aliquot_tag": "ALQ_b8ee90e0", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05889.WXS.Tbm C3L-05889 AML WXS tumor_bone_marrow CPT0344240001 CPT0344240001.WholeExome.RP-1303.bam 21468382058 BAM submitted_aligned CPTAC3 266926a8-eda2-4aa2-a559-631925b01bca 9d56bd121a4ae5d3f61f6933380f1ff3 {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05889.WXS.Tbm.hg38 C3L-05889 AML WXS tumor_bone_marrow CPT0344240001 91a44851-93b5-4106-a7d2-43bfd9061fdd_wxs_gdc_realn.bam 29487886716 BAM harmonized CPTAC3 1148e441-9e4c-4933-ba8c-a74739c59cd6 7ac156d68fb44b5be215558dddaf092b {"aliquot_tag": "ALQ_9e007ebc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05891.MethArray.Green.Tbm C3L-05891 AML Methylation_Array tumor_bone_marrow CPT0344460002 205589730117_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 073251d4-e3c4-41ae-941a-8386f65f6735 8b84a440222022afd16a808ddca7c57b {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.MethArray.Red.Tbm C3L-05891 AML Methylation_Array tumor_bone_marrow CPT0344460002 205589730117_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 143c5c9d-7475-4f16-8129-32e94b67a53d ef7a2a24508e36df5609e73c8c0af62e {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.miRNA-Seq.S33_L007_R1.Tbm C3L-05891 AML miRNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC31-K00269_0297_AHKCFKBBXY_TGACCA_S33_L007_R1_001.unaln.bam 220925145 BAM S33_L007_R1 submitted_unaligned CPTAC3 0e5ecc3c-e44b-49da-bcf8-9a11829da039 bb55518d3e0d13bd1bd8746356595807 {"aliquot_tag": "ALQ_96f0b6cb", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05891.miRNA-Seq.Tbm.hg38 C3L-05891 AML miRNA-Seq tumor_bone_marrow CPT0344470002 75b9959e-f476-4e3a-aa59-8583cd6f8cd7_mirnaseq_gdc_realn.bam 237980277 BAM harmonized CPTAC3 ad97ba93-ab70-46a9-8554-66a4eefb5ed3 543c6b731257a212d1717453d3d92eb7 {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05891.RNA-Seq.chimeric.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.chimeric.gdc_realn.bam 125061288 BAM chimeric harmonized CPTAC3 3f692bc8-a618-4339-bd2b-49b9c29accba 0cb7133fa513ae27b96ecc77d6596346 {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.RNA-Seq.genomic.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.genomic.gdc_realn.bam 7414092079 BAM genomic harmonized CPTAC3 70ea5557-22d3-4350-803e-a4c170565909 e9a9cc9874dd86fb9d3d5a81fcacee9d {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.RNA-Seq.S9_L003_R1.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R1_001.fastq.gz 3742419259 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 5e9c334a-180d-4890-820b-7cd231323293 f67afd01478bd9587214e63b7367f094 {"aliquot_tag": "ALQ_96f0b6cb", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05891.RNA-Seq.S9_L003_R2.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R2_001.fastq.gz 3937724088 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 2f95d192-8eb5-40a0-9b25-678d8ccd5016 0763172b72c4356c96d3ba5e09c56db2 {"aliquot_tag": "ALQ_96f0b6cb", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05891.RNA-Seq.transcriptome.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.transcriptome.gdc_realn.bam 8443924819 BAM transcriptome harmonized CPTAC3 74564fc9-c6ad-4677-900f-d5d6d6430091 88ec669cc7959172bd1c5fbc894d23e4 {"aliquot_tag": "ALQ_96f0b6cb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.WGS.Nbc C3L-05891 AML WGS buccal_normal CPT0344430002 CPT0344430002.WholeGenome.RP-2158.bam 60418028656 BAM submitted_aligned CPTAC3 ebb4cb9b-34b8-4d0a-896f-a1d4eb1aa930 e9d45de02858835ba620bb2f9a67a99f {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05891.WGS.Nbc.hg38 C3L-05891 AML WGS buccal_normal CPT0344430002 0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wgs_gdc_realn.bam 196247280574 BAM harmonized CPTAC3 aa5e5bd5-4de1-4fc8-9900-db318dd44574 a598e08ba21ec46579405d4f90b885b1 {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05891.WGS.Tbm C3L-05891 AML WGS tumor_bone_marrow CPT0344460002 CPT0344460002.WholeGenome.RP-2158.bam 53356809941 BAM submitted_aligned CPTAC3 45a58ac1-bbda-482f-8836-661caa2b8483 c9bed33cba691de6f78c4320d04b493a {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.WGS.Tbm.hg38 C3L-05891 AML WGS tumor_bone_marrow CPT0344460002 e06dcccc-bd53-41b6-815e-5ac4e351fa97_wgs_gdc_realn.bam 152372269151 BAM harmonized CPTAC3 9f9777c6-debb-46c5-a695-f9d04ec1236c 3f212900680f470cd0edcc1267acd1a3 {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.WXS.Nbc C3L-05891 AML WXS buccal_normal CPT0344430002 CPT0344430002.WholeExome.RP-1303.bam 33463462757 BAM submitted_aligned CPTAC3 778c0ea6-b5f9-4578-bad6-c19e1646af58 5764c861b91f1ea3dfa5b5b155b14727 {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05891.WXS.Nbc.hg38 C3L-05891 AML WXS buccal_normal CPT0344430002 0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wxs_gdc_realn.bam 46274197322 BAM harmonized CPTAC3 08dfa21d-c21b-4a87-8285-94d4978a4cbc b30004e66dbb585307108593ec459bb1 {"aliquot_tag": "ALQ_6370100b", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05891.WXS.Tbm C3L-05891 AML WXS tumor_bone_marrow CPT0344460002 CPT0344460002.WholeExome.RP-1303.bam 26377484748 BAM submitted_aligned CPTAC3 be076348-9167-46bf-8712-554ba5b40a62 6e59ddc2724a49b1fc8a5448813177cc {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05891.WXS.Tbm.hg38 C3L-05891 AML WXS tumor_bone_marrow CPT0344460002 e06dcccc-bd53-41b6-815e-5ac4e351fa97_wxs_gdc_realn.bam 36023652593 BAM harmonized CPTAC3 e8855cd6-e357-4889-b201-d59dd9e8e6f5 5be131e3997b3e2e54cf8ade152eab39 {"aliquot_tag": "ALQ_ab909f7b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05892.MethArray.Green.Tbm C3L-05892 AML Methylation_Array tumor_bone_marrow CPT0344570002 205555390174_R07C01_Grn.idat 13677965 IDAT Green NA CPTAC3 32969927-2f15-4e71-a9ec-90167211f6cd 1fb4682fdca6b57714b0ef08d669a20f {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.MethArray.Red.Tbm C3L-05892 AML Methylation_Array tumor_bone_marrow CPT0344570002 205555390174_R07C01_Red.idat 13677965 IDAT Red NA CPTAC3 6cdaf597-e8df-4ed1-b462-0a064d6c4c93 3c617871a196b119e6628239fd68709d {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.miRNA-Seq.S14_L007_R1.Tbm C3L-05892 AML miRNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACAGTG_S14_L007_R1_001.unaln.bam 226351704 BAM S14_L007_R1 submitted_unaligned CPTAC3 16dd3a39-574e-4a2f-9e13-07feb2b5ee77 0bb398b665681cb195f4cd1bb12add38 {"aliquot_tag": "ALQ_dffcf2bf", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05892.miRNA-Seq.Tbm.hg38 C3L-05892 AML miRNA-Seq tumor_bone_marrow CPT0344580002 43a4585c-44e2-4532-8cf6-73dca98d345e_mirnaseq_gdc_realn.bam 240129874 BAM harmonized CPTAC3 05ccb4e4-f3c4-42a1-a613-ab84f4bfd8c9 e79b547cbdcc5d2b6c0dae60a56b5978 {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05892.RNA-Seq.chimeric.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.chimeric.gdc_realn.bam 125580417 BAM chimeric harmonized CPTAC3 848c1061-a89e-409f-8014-fa9b95bca8f3 74be8a6238e45fac040bb3a0af41e05c {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.RNA-Seq.genomic.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.genomic.gdc_realn.bam 8980071101 BAM genomic harmonized CPTAC3 b168c5b2-9699-49ae-b592-298d708521e2 44b48b28c9488a4a696b1cb7910afbf8 {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.RNA-Seq.S5_L002_R1.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3856451427 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 28189eba-fc3b-47fa-ac61-71b9c3fe1e29 80232a7f4ad27f82b426643ee5790b0f {"aliquot_tag": "ALQ_dffcf2bf", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05892.RNA-Seq.S5_L002_R2.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 4224582460 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 624dee72-97d3-4fe3-9653-94dd0f19793d 5a8480f2fa5ca69f1e557f6a00320275 {"aliquot_tag": "ALQ_dffcf2bf", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05892.RNA-Seq.transcriptome.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.transcriptome.gdc_realn.bam 7471134778 BAM transcriptome harmonized CPTAC3 82e63f79-d94c-4ab7-bdb8-7e46436085a8 8e3bb5986e6653da5b6e6d26571ed662 {"aliquot_tag": "ALQ_dffcf2bf", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.WGS.Tbm C3L-05892 AML WGS tumor_bone_marrow CPT0344570002 CPT0344570002.WholeGenome.RP-2158.bam 61917713256 BAM submitted_aligned CPTAC3 7d352dbc-8a90-45df-855b-a4e98e47cac4 fc49c467876c302fd5843364681ac155 {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.WGS.Tbm.hg38 C3L-05892 AML WGS tumor_bone_marrow CPT0344570002 6b2ae50d-20ab-4dc2-ab5a-1b5370589454_wgs_gdc_realn.bam 174566382789 BAM harmonized CPTAC3 b5088c7b-0d10-4cce-a961-2b8009241317 c2c13449a2d2d3b6b8811163376c8794 {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.WXS.Nbc C3L-05892 AML WXS buccal_normal CPT0344540003 CPT0344540003.WholeExome.RP-1303.bam 29866798117 BAM submitted_aligned CPTAC3 9bcd0064-135e-4589-a675-05fb2b24563d 48fb0bbdcb2a7886e80b99251663ce12 {"aliquot_tag": "ALQ_6d0b2f28", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05892.WXS.Nbc.hg38 C3L-05892 AML WXS buccal_normal CPT0344540003 3bc743d0-e149-46ec-a307-fc027b6b2a97_wxs_gdc_realn.bam 40930894212 BAM harmonized CPTAC3 1d5719fd-0d06-4185-9d13-ed1195d72fc4 fb9aae49cc347e7709e22edd7c9f05dc {"aliquot_tag": "ALQ_6d0b2f28", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05892.WXS.Tbm C3L-05892 AML WXS tumor_bone_marrow CPT0344570002 CPT0344570002.WholeExome.RP-1303.bam 23528728112 BAM submitted_aligned CPTAC3 1f21eff4-75e0-4fd3-a9af-a5433910fe29 8dd1d6b77e0e905cc3506505cbd347bf {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05892.WXS.Tbm.hg38 C3L-05892 AML WXS tumor_bone_marrow CPT0344570002 6b2ae50d-20ab-4dc2-ab5a-1b5370589454_wxs_gdc_realn.bam 32184558939 BAM harmonized CPTAC3 00b3b841-4dae-4d1d-b106-f15c7d50fcc9 4fe75db2a087b330c1acce7f0ef5a06c {"aliquot_tag": "ALQ_5dac656e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05894.MethArray.Green.Tbm C3L-05894 AML Methylation_Array tumor_bone_marrow CPT0300520002 205555380155_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 3e5ff1cb-9336-4411-b4c0-e03022ff0b4d b1d0ae2e519cad66a36ed5463ee6146f {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.MethArray.Red.Tbm C3L-05894 AML Methylation_Array tumor_bone_marrow CPT0300520002 205555380155_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 004acc8d-2415-4b9e-a59e-9b38cca35e63 1aa684ab246b272164b207b78b9c54f3 {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.miRNA-Seq.S17_L001_R1.Tbm C3L-05894 AML miRNA-Seq tumor_bone_marrow CPT0300530002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGGCC_S17_L001_R1_001.unaln.bam 245668617 BAM S17_L001_R1 submitted_unaligned CPTAC3 5d975d09-44dc-4085-8238-4efb7f9ad65e 379ed9eb1ac4e66b4be1236aa6d2e5d9 {"aliquot_tag": "ALQ_d829e947", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.miRNA-Seq.Tbm.hg38 C3L-05894 AML miRNA-Seq tumor_bone_marrow CPT0300530002 e4b6780a-9e5d-462a-9787-226f9680e39e_mirnaseq_gdc_realn.bam 266676667 BAM harmonized CPTAC3 c4cbcf70-945e-49f9-8322-e678ecc3e6be fe9875305d2be133869cf5baa685273a {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.RNA-Seq.chimeric.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.chimeric.gdc_realn.bam 92301159 BAM chimeric harmonized CPTAC3 4d281739-b3d7-4dd1-934e-28527f55fb87 2bbf5dd811327a85b3bee88652c0c8c5 {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.RNA-Seq.genomic.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.genomic.gdc_realn.bam 7169723181 BAM genomic harmonized CPTAC3 27b0299f-d71f-47d7-aaa6-0725b9694482 0a3dfbcc11926d7b62228e3d29484598 {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.RNA-Seq.S14_L004_R1.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3647790340 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 856e135f-034f-44f6-821f-65ac85cf7475 daa263d589e1e40ad6daed016cd1543d {"aliquot_tag": "ALQ_d829e947", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05894.RNA-Seq.S14_L004_R2.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3869227268 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 50c8b190-4ce0-4bb4-8dc0-b1daf098b6af b2016888ba60b6ecd46130b2619a19f1 {"aliquot_tag": "ALQ_d829e947", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05894.RNA-Seq.transcriptome.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.transcriptome.gdc_realn.bam 8823923071 BAM transcriptome harmonized CPTAC3 08159852-3449-4694-bb11-82118fe3dc46 1c2e0a4314eb4128a328ff99ea143014 {"aliquot_tag": "ALQ_d829e947", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.WGS.Tbm C3L-05894 AML WGS tumor_bone_marrow CPT0300520002 CPT0300520002.WholeGenome.RP-2158.bam 51681398515 BAM submitted_aligned CPTAC3 3213b80f-331d-42ee-9895-4803c47d1ec4 7ced222c57d562e13c80c8d5b0c0995c {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.WGS.Tbm.hg38 C3L-05894 AML WGS tumor_bone_marrow CPT0300520002 8f262260-85fc-4a2f-a801-8ed54dfe0bd8_wgs_gdc_realn.bam 154276499193 BAM harmonized CPTAC3 8ce18ce7-5ab3-4e55-b031-1e200bad9e76 b3b6f42f597c80dceb1bf30d0d9b51ca {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.WXS.Nbc C3L-05894 AML WXS buccal_normal CPT0300490002 CPT0300490002.WholeExome.RP-1303.bam 22090165704 BAM submitted_aligned CPTAC3 5a164828-b5e9-4e2b-a09b-cf227f251209 69a795f31d89d8c8051e34a6d080d95b {"aliquot_tag": "ALQ_59c52243", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05894.WXS.Nbc.hg38 C3L-05894 AML WXS buccal_normal CPT0300490002 3b5bd451-95b6-42e1-b037-2254c5302c95_wxs_gdc_realn.bam 30200452871 BAM harmonized CPTAC3 e1a46f9f-2e3b-482c-a95e-6c04ff1de4b7 23637e659175ef0e2668cc0814d50aab {"aliquot_tag": "ALQ_59c52243", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05894.WXS.Tbm C3L-05894 AML WXS tumor_bone_marrow CPT0300520002 CPT0300520002.WholeExome.RP-1303.bam 24724503632 BAM submitted_aligned CPTAC3 3166b044-99ef-4ffb-9668-1e6c4eb5930d 2d69f098ed083d3338cf3bc18629b573 {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05894.WXS.Tbm.hg38 C3L-05894 AML WXS tumor_bone_marrow CPT0300520002 8f262260-85fc-4a2f-a801-8ed54dfe0bd8_wxs_gdc_realn.bam 33553658365 BAM harmonized CPTAC3 c615455d-4137-4d2d-a581-25ec5cc8b0d7 7f8bde1a55978a8eac48d40111a60886 {"aliquot_tag": "ALQ_e549c0f7", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05896.MethArray.Green.Tbm C3L-05896 AML Methylation_Array tumor_bone_marrow CPT0344840002 205987780161_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6cb11088-5809-4f10-b0db-76d7545b78e3 e90640d50655ac3fcd55439ecfe51f60 {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05896.MethArray.Red.Tbm C3L-05896 AML Methylation_Array tumor_bone_marrow CPT0344840002 205987780161_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 9544f37c-f46e-4537-85eb-96410184f6d8 541b2933621fe0e3d46f1d1d99105d00 {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05896.miRNA-Seq.S11_L001_R1.Tpb C3L-05896 AML miRNA-Seq tumor_peripheral_blood CPT0344870002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L001_R1_001.unaln.bam 262339419 BAM S11_L001_R1 submitted_unaligned CPTAC3 8ce9e68b-b412-4911-b102-4dd0d4c1d98f 3d89acf999708067b88947e35a13bb0b {"aliquot_tag": "ALQ_e13276b0", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05896.miRNA-Seq.Tpb.hg38 C3L-05896 AML miRNA-Seq tumor_peripheral_blood CPT0344870002 00cd7b06-6c39-4da0-b497-5d16762c9594_mirnaseq_gdc_realn.bam 284801918 BAM harmonized CPTAC3 5a6fd180-ec96-4df2-9b70-236b7fd14926 825038f671a24199ba516ca1ea2f4578 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05896.RNA-Seq.chimeric.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.chimeric.gdc_realn.bam 507929428 BAM chimeric harmonized CPTAC3 e056a8f6-aa98-40b8-ae92-e3cb2d15f647 90d5a57806435472b36fd842aeae1f23 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05896.RNA-Seq.genomic.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.genomic.gdc_realn.bam 8645804622 BAM genomic harmonized CPTAC3 447ec45c-a31e-41ef-83f2-8a755213f942 ccc22730d19704f7dda845007df3e379 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05896.RNA-Seq.S16_L004_R1.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R1_001.fastq.gz 4244493510 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 311f9869-14ad-4d89-a131-5d510c836065 aeecbf2d5db55a6f519795ea05d7296d {"aliquot_tag": "ALQ_e13276b0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05896.RNA-Seq.S16_L004_R2.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R2_001.fastq.gz 4581900123 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 7f023f41-7b84-4b3d-bb5e-85fae3e0d179 f796ed68990b318a66f7d88b101f8403 {"aliquot_tag": "ALQ_e13276b0", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05896.RNA-Seq.transcriptome.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.transcriptome.gdc_realn.bam 9045706078 BAM transcriptome harmonized CPTAC3 21c70f0b-f80c-436f-a5e9-74f524ea34b7 b3e9e51be2b07098f90b4cae57244307 {"aliquot_tag": "ALQ_e13276b0", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05896.WGS.Nbc C3L-05896 AML WGS buccal_normal CPT0344810003 CPT0344810003.WholeGenome.RP-2158.bam 49555549432 BAM submitted_aligned CPTAC3 124d0975-02aa-42cb-9d40-812e14646807 778a44eb752209393467b3cd5ef2b89d {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05896.WGS.Nbc.hg38 C3L-05896 AML WGS buccal_normal CPT0344810003 a8787364-b796-4765-9d33-4704430f6803_wgs_gdc_realn.bam 149874320363 BAM harmonized CPTAC3 80234ef6-f17c-4840-ae61-720e520c53ee 427a31e782bc50473eaa4d5e6838a890 {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05896.WGS.Tbm C3L-05896 AML WGS tumor_bone_marrow CPT0344840002 CPT0344840002.WholeGenome.RP-2158.bam 48320264108 BAM submitted_aligned CPTAC3 be97c4aa-12ef-47d5-91bc-5530c9f799b9 de3513d47c47b01a1bdb36f20e2fcaed {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05896.WGS.Tbm.hg38 C3L-05896 AML WGS tumor_bone_marrow CPT0344840002 289d953c-baea-4aae-9b01-3cff1fd8464f_wgs_gdc_realn.bam 143146606316 BAM harmonized CPTAC3 0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7 0a7be7b15c380fa31e79c208aa275cde {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05896.WXS.Nbc C3L-05896 AML WXS buccal_normal CPT0344810003 CPT0344810003.WholeExome.RP-1303.bam 26366554171 BAM submitted_aligned CPTAC3 5de65a0a-ae3a-4d11-9df2-489b96d2d5fc fe2abaf27fe7e0c15a8da54f562fcd2e {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05896.WXS.Nbc.hg38 C3L-05896 AML WXS buccal_normal CPT0344810003 a8787364-b796-4765-9d33-4704430f6803_wxs_gdc_realn.bam 35527659437 BAM harmonized CPTAC3 5cb56b61-4615-4065-aedb-ac4019618f66 8257a4ee8abc941dc907d5301b8d598a {"aliquot_tag": "ALQ_1975b386", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05896.WXS.Tbm C3L-05896 AML WXS tumor_bone_marrow CPT0344840002 CPT0344840002.WholeExome.RP-1303.bam 27978569074 BAM submitted_aligned CPTAC3 3cc289dd-24ab-4686-94e3-4b0c1413203b b13b9a8474e9b476758b38ee943e9662 {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05896.WXS.Tbm.hg38 C3L-05896 AML WXS tumor_bone_marrow CPT0344840002 289d953c-baea-4aae-9b01-3cff1fd8464f_wxs_gdc_realn.bam 38735747297 BAM harmonized CPTAC3 36fc5398-69bf-40ee-8769-44aed38629be c22f4b6778fc3b5c08914204cc3bd4fd {"aliquot_tag": "ALQ_a6920c60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05898.MethArray.Green.Tbm C3L-05898 AML Methylation_Array tumor_bone_marrow CPT0344950002 205987770157_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 06b9b51d-e25a-46ba-a475-dd76cb973656 533128d774f8352af3556d7b20a8782d {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05898.MethArray.Red.Tbm C3L-05898 AML Methylation_Array tumor_bone_marrow CPT0344950002 205987770157_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 3a98a9e6-1a06-42b2-bd5b-841c58216761 c4d0e551bd8c800b4cd2b8e1faa5d46c {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05898.miRNA-Seq.S12_L001_R1.Tpb C3L-05898 AML miRNA-Seq tumor_peripheral_blood CPT0344980002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L001_R1_001.unaln.bam 322158345 BAM S12_L001_R1 submitted_unaligned CPTAC3 228b084a-4d22-483e-a6a3-cb928ced5c93 da093b09f3e24b022b8e0aeea0630e5c {"aliquot_tag": "ALQ_a83e32c4", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05898.miRNA-Seq.Tpb.hg38 C3L-05898 AML miRNA-Seq tumor_peripheral_blood CPT0344980002 ee6a82bf-2a3a-4a6e-820f-e1252ee0ce89_mirnaseq_gdc_realn.bam 348546487 BAM harmonized CPTAC3 e2fcb0d6-5daf-4f23-9d8a-1d9bd876ee51 061bd63360187644a7ebf3c750bc6afe {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05898.RNA-Seq.chimeric.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.chimeric.gdc_realn.bam 472595446 BAM chimeric harmonized CPTAC3 9658f58d-950a-4973-8cd9-c5afa8f22e95 b9dc24040f6f6d6a33a21ff84597645b {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05898.RNA-Seq.genomic.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.genomic.gdc_realn.bam 8286664583 BAM genomic harmonized CPTAC3 7f442cd7-85fc-41de-8598-455bdae60199 d363d85615301e3cc9375c2916304546 {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05898.RNA-Seq.S17_L005_R1.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R1_001.fastq.gz 3654511623 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 13dade3a-17ec-4dcc-b306-27c6c282aebd aaacaa90f29b193263e95ab1704fa725 {"aliquot_tag": "ALQ_a83e32c4", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05898.RNA-Seq.S17_L005_R2.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R2_001.fastq.gz 3974470097 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 6717aa61-9187-4996-ae44-d79dd6e1b16d bfbc70c705f889dfa7c0823d46c200d4 {"aliquot_tag": "ALQ_a83e32c4", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05898.RNA-Seq.transcriptome.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.transcriptome.gdc_realn.bam 6925380648 BAM transcriptome harmonized CPTAC3 8b627ce6-87b0-4b0a-93b5-9356f5589f37 4f006c44d6e2b4ec5c00b933f2a9e8e4 {"aliquot_tag": "ALQ_a83e32c4", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05898.WGS.Tbm C3L-05898 AML WGS tumor_bone_marrow CPT0344950002 CPT0344950002.WholeGenome.RP-2158.bam 43658142411 BAM submitted_aligned CPTAC3 b0bb007f-a7e2-41f8-948d-60adaec827b5 bcb6520c7a3bc470a527579c74fa553e {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05898.WGS.Tbm.hg38 C3L-05898 AML WGS tumor_bone_marrow CPT0344950002 7a2b9e09-2bca-4aea-ba5c-9dbf0b30bf40_wgs_gdc_realn.bam 133152812373 BAM harmonized CPTAC3 6f49e9fe-df23-4e18-9a92-d2a21bc2344c 627c38a1ca11998c2cc634a55b10b60f {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05898.WXS.Nbc C3L-05898 AML WXS buccal_normal CPT0344920005 CPT0344920005.WholeExome.RP-1303.bam 24338718505 BAM submitted_aligned CPTAC3 7968b926-37e4-4c89-8477-11a967ed8c25 2b9f0949e7c2cfe4f916a53a23d3e9dc {"aliquot_tag": "ALQ_7ceabfc6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05898.WXS.Nbc.hg38 C3L-05898 AML WXS buccal_normal CPT0344920005 ac06d127-7ee9-460f-88e8-dad1bc7b8f8a_wxs_gdc_realn.bam 32893244271 BAM harmonized CPTAC3 c207cee2-93ef-463d-aec6-ceaf6b131c3f ae4f0f3b6c8ea9cefd22cd0b19e27cff {"aliquot_tag": "ALQ_7ceabfc6", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05898.WXS.Tbm C3L-05898 AML WXS tumor_bone_marrow CPT0344950002 CPT0344950002.WholeExome.RP-1303.bam 28549605478 BAM submitted_aligned CPTAC3 bf4a5777-1b1b-4c80-a38a-0cc71f87118a 2379f13c9417464c5418d0a6bee80469 {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05898.WXS.Tbm.hg38 C3L-05898 AML WXS tumor_bone_marrow CPT0344950002 7a2b9e09-2bca-4aea-ba5c-9dbf0b30bf40_wxs_gdc_realn.bam 39906623067 BAM harmonized CPTAC3 4528565c-d11e-46b6-815c-17e44f7f1859 d49638f36c89f152cdd748f258af6901 {"aliquot_tag": "ALQ_50aef675", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05905.MethArray.Green.Tpb C3L-05905 AML Methylation_Array tumor_peripheral_blood CPT0345310002 205705520145_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 af67b6b5-d0ba-43d3-bb1f-35aca3db6a1e 313b9c17837e2e5972395d923e92c5a6 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.MethArray.Red.Tpb C3L-05905 AML Methylation_Array tumor_peripheral_blood CPT0345310002 205705520145_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 4e139239-d771-4a7c-aa39-1f43356bc047 4b3743e4b7033131c63f3017a9afcb9d {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.miRNA-Seq.S34_L002_R1.Tpb C3L-05905 AML miRNA-Seq tumor_peripheral_blood CPT0345320002 220125_UNC32-K00270_0311_AHMNYYBBXY_GATCAG_S34_L002_R1_001.unaln.bam 197197875 BAM S34_L002_R1 submitted_unaligned CPTAC3 3c83b257-534b-47df-8941-835a86e7bef0 80a0a8c4cdcab26bb1d5d00c3674e128 {"aliquot_tag": "ALQ_e56202b7", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.miRNA-Seq.Tpb.hg38 C3L-05905 AML miRNA-Seq tumor_peripheral_blood CPT0345320002 71a10c9b-72b6-430e-b1d1-1d13a93e2415_mirnaseq_gdc_realn.bam 219029289 BAM harmonized CPTAC3 a409066d-3a11-40a5-9e15-51edc2d147f1 c5bf1b58026e107f84c08265ad5a7574 {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.RNA-Seq.chimeric.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.chimeric.gdc_realn.bam 459901022 BAM chimeric harmonized CPTAC3 49994065-d09a-459e-85fd-97d6480ea82d 6eb4c8db561f4e76b754463ffea32058 {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.RNA-Seq.genomic.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.genomic.gdc_realn.bam 6780800175 BAM genomic harmonized CPTAC3 38198b6b-ea5a-4e77-a33d-c73cdf816e72 7b84f45a2a29509eed3072cae38db063 {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.RNA-Seq.S2_L001_R1.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R1_001.fastq.gz 3429429812 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 7fe72174-8147-453f-b08b-0502d721e5f0 e5a38e81ae481eb21115affaac76c8e2 {"aliquot_tag": "ALQ_e56202b7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.RNA-Seq.S2_L001_R2.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R2_001.fastq.gz 3739804390 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 78fb450b-4932-417a-8a7b-c7a93b7ac885 51994a8b48450d76eeacb2e73a2b5d55 {"aliquot_tag": "ALQ_e56202b7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.RNA-Seq.transcriptome.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.transcriptome.gdc_realn.bam 7512993551 BAM transcriptome harmonized CPTAC3 661d098f-fb7e-4eb8-ba42-5e24b85ab7f9 d9ce0674bb43a5db48bf51bade46eb6d {"aliquot_tag": "ALQ_e56202b7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.WGS.Nbc C3L-05905 AML WGS buccal_normal CPT0345240003 CPT0345240003.WholeGenome.RP-2158.bam 47615602604 BAM submitted_aligned CPTAC3 f02a12c0-3928-419d-841f-59f5f52740a4 e4e79599c2073d49084c8cf4b8394f94 {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05905.WGS.Nbc.hg38 C3L-05905 AML WGS buccal_normal CPT0345240003 06063016-e53a-44ae-bdcc-6a49f310d450_wgs_gdc_realn.bam 144563530355 BAM harmonized CPTAC3 f3356d52-443e-430b-b183-c2255a34aee4 4ac044281c0461e2ca106b2896a0108d {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05905.WGS.Tpb C3L-05905 AML WGS tumor_peripheral_blood CPT0345310002 CPT0345310002.WholeGenome.RP-2158.bam 49010225233 BAM submitted_aligned CPTAC3 9754153b-c5c7-49cb-afe8-fcc30a0a3106 052597964473f89fdc3cfbcffb7b00f1 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.WGS.Tpb.hg38 C3L-05905 AML WGS tumor_peripheral_blood CPT0345310002 3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wgs_gdc_realn.bam 148184199354 BAM harmonized CPTAC3 10d9505e-54f3-4fda-8d41-9397231019b3 1bf812fd27a5f01fd10fe1b6d700e871 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.WXS.Nbc C3L-05905 AML WXS buccal_normal CPT0345240003 CPT0345240003.WholeExome.RP-1303.bam 23121993587 BAM submitted_aligned CPTAC3 0e5bcdb8-e735-4d8a-a184-f9927e8f864c 43d9ad8a83b71eca9a3035afefd2c129 {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05905.WXS.Nbc.hg38 C3L-05905 AML WXS buccal_normal CPT0345240003 06063016-e53a-44ae-bdcc-6a49f310d450_wxs_gdc_realn.bam 31688360670 BAM harmonized CPTAC3 f32fb5f4-b57f-4fff-93bd-2ddcc99f3480 33f99fa68a08103abd1cfde825217b91 {"aliquot_tag": "ALQ_d6791424", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05905.WXS.Tpb C3L-05905 AML WXS tumor_peripheral_blood CPT0345310002 CPT0345310002.WholeExome.RP-1303.bam 23628176341 BAM submitted_aligned CPTAC3 357502d9-a2fa-4548-b031-518280265a44 c3bdaa5751a2483e8d6f674dc3296a23 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-05905.WXS.Tpb.hg38 C3L-05905 AML WXS tumor_peripheral_blood CPT0345310002 3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wxs_gdc_realn.bam 32772271390 BAM harmonized CPTAC3 72d9a24e-0d39-4ee4-8352-596c34431cbb a10deb1ac8dbfb160bc30820d7ac32f2 {"aliquot_tag": "ALQ_a2c27867", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05907.MethArray.Green.Tbm C3L-05907 AML Methylation_Array tumor_bone_marrow CPT0303920002 205555380136_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d1798da2-3452-4284-9139-8d80bcb7223f ec7994b93c443093346aeb1378cf2f35 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.MethArray.Red.Tbm C3L-05907 AML Methylation_Array tumor_bone_marrow CPT0303920002 205555380136_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 71a188ff-507a-4d85-9080-6a7b60cc9475 97e8270ab3d96bfc28e4bfa9b3b88f9d {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.miRNA-Seq.S10_L001_R1.Tbm C3L-05907 AML miRNA-Seq tumor_bone_marrow CPT0303930002 210702_UNC32-K00270_0289_AHKJ22BBXY_CTTGTA_S10_L001_R1_001.unaln.bam 261293082 BAM S10_L001_R1 submitted_unaligned CPTAC3 629e0635-9d6c-4060-acd5-90f9bf0d7c05 200dbe018d81d3d40771282926ac44d5 {"aliquot_tag": "ALQ_9e0333a1", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.miRNA-Seq.Tbm.hg38 C3L-05907 AML miRNA-Seq tumor_bone_marrow CPT0303930002 0c56e912-196a-4028-ae9d-9fd319ab9064_mirnaseq_gdc_realn.bam 280101684 BAM harmonized CPTAC3 a0ccc929-d8ce-4fff-9633-aed771ad22eb 691f548e56297403425bbe407c61a354 {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.RNA-Seq.chimeric.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.chimeric.gdc_realn.bam 206361159 BAM chimeric harmonized CPTAC3 86886cd7-bad1-4e6e-bcc3-d32c2091d8b3 51cb6b755c51226125d9366bb5e724d0 {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.RNA-Seq.genomic.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.genomic.gdc_realn.bam 7138980630 BAM genomic harmonized CPTAC3 056e8013-b590-4e72-9fd8-acb3e3165ae3 78d27d04828f24492ad592b390875739 {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.RNA-Seq.S21_L006_R1.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 3641688186 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 e1b09891-6cfe-4899-b6c7-0c6286252c8f f0f5533dbe7d5b141c69ff2a870b7804 {"aliquot_tag": "ALQ_9e0333a1", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05907.RNA-Seq.S21_L006_R2.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 3798003850 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 6fe7fe10-f336-4191-bc15-6b18a17733e6 5933d46aab4a6a4293ca364f7cbd9e7e {"aliquot_tag": "ALQ_9e0333a1", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-05907.RNA-Seq.transcriptome.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.transcriptome.gdc_realn.bam 9734597258 BAM transcriptome harmonized CPTAC3 b11e4f5f-6a8f-4160-bf09-4d0fa57ad1d5 f98ee44913388f8e340c85d0e283681c {"aliquot_tag": "ALQ_9e0333a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.WGS.Tbm C3L-05907 AML WGS tumor_bone_marrow CPT0303920002 CPT0303920002.WholeGenome.RP-2158.bam 46641710766 BAM submitted_aligned CPTAC3 4a4fda2b-3021-4dca-b7b2-e822661f7e75 4b54a710cb1acfed2bb6a825111517a1 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.WGS.Tbm.hg38 C3L-05907 AML WGS tumor_bone_marrow CPT0303920002 efc001f4-8713-47be-bd13-d1b3a5bee982_wgs_gdc_realn.bam 133987663938 BAM harmonized CPTAC3 07a41b7a-7841-449f-842a-afa501612e75 b85e436b70f40061296c2f0436113cfc {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.WXS.Nbc C3L-05907 AML WXS buccal_normal CPT0303960003 CPT0303960003.WholeExome.RP-1303.bam 25378722793 BAM submitted_aligned CPTAC3 b18cfb08-33a0-464c-b73f-e4945c228554 d9b3df0ceb3869866dbbc5fa76f45766 {"aliquot_tag": "ALQ_21e48c47", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05907.WXS.Nbc.hg38 C3L-05907 AML WXS buccal_normal CPT0303960003 429db6f5-16c6-4aa1-925b-33d2715bb17e_wxs_gdc_realn.bam 34667825715 BAM harmonized CPTAC3 a144f235-3dd9-49e5-9645-78f7d893cc8c 640987bd25aa593209f972670172b4ac {"aliquot_tag": "ALQ_21e48c47", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05907.WXS.Tbm C3L-05907 AML WXS tumor_bone_marrow CPT0303920002 CPT0303920002.WholeExome.RP-1303.bam 25871164950 BAM submitted_aligned CPTAC3 7869dfb0-5064-4af0-a62d-026e9d9776e7 6062b5f18e524d061a8762d785195392 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05907.WXS.Tbm.hg38 C3L-05907 AML WXS tumor_bone_marrow CPT0303920002 efc001f4-8713-47be-bd13-d1b3a5bee982_wxs_gdc_realn.bam 36332508702 BAM harmonized CPTAC3 feddb0fb-240c-4623-8b66-abfbde61da17 36b87acae31d77ca353dc6d3814fa075 {"aliquot_tag": "ALQ_a3631a11", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05908.MethArray.Green.Tbm C3L-05908 AML Methylation_Array tumor_bone_marrow CPT0326900002 205555390119_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a2fcc4b1-bd58-4e6e-8b4d-9687867521b4 4bf5f39353214c35e11aa41746478654 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.MethArray.Red.Tbm C3L-05908 AML Methylation_Array tumor_bone_marrow CPT0326900002 205555390119_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 d8936616-ba26-4828-9af0-0440c21371ad d63ca079e8358018bd32bf365e31d56d {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.miRNA-Seq.S37_L008_R1.Tbm C3L-05908 AML miRNA-Seq tumor_bone_marrow CPT0326910002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATTCCT_S37_L008_R1_001.unaln.bam 346407918 BAM S37_L008_R1 submitted_unaligned CPTAC3 e53e5139-00c7-454b-be12-008fe7e9ab7f 7cd18713a32b7de9f9cd2e34e0c2fdb8 {"aliquot_tag": "ALQ_f4de481b", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.miRNA-Seq.Tbm.hg38 C3L-05908 AML miRNA-Seq tumor_bone_marrow CPT0326910002 4bdb201f-d813-4269-8c60-9c80e8489aa5_mirnaseq_gdc_realn.bam 361154778 BAM harmonized CPTAC3 717ff795-e0b0-4e43-9f81-b5df79209ac5 19bf0d733f50de0547ff9f02183c4cd1 {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.RNA-Seq.chimeric.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.chimeric.gdc_realn.bam 226751873 BAM chimeric harmonized CPTAC3 0ee4ed5d-404b-4950-98d6-1f60dfe5ed61 435ba3535f59e7ecf99fcc74e48f7bab {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.RNA-Seq.genomic.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.genomic.gdc_realn.bam 7366577667 BAM genomic harmonized CPTAC3 9b26fd17-3b35-4805-857c-9e7e646498a3 edc52fcfc7c30d88ae9bb719fb22e184 {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.RNA-Seq.S5_L002_R1.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R1_001.fastq.gz 3657355336 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 0e1c76c8-7de2-4fd1-9057-cf88ed5ea0d2 fc0ce2c2381f96d0a4651b4ede314188 {"aliquot_tag": "ALQ_f4de481b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.RNA-Seq.S5_L002_R2.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R2_001.fastq.gz 3952540450 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 9aba5117-7ae3-416e-880d-7b1136939ec6 2c711bb750b228b827c3b4069e7a1c8b {"aliquot_tag": "ALQ_f4de481b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.RNA-Seq.transcriptome.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.transcriptome.gdc_realn.bam 9190884030 BAM transcriptome harmonized CPTAC3 ef741768-323a-4f91-afae-68b8e7d2c070 02a126c45536e837b1ea2417eabc031a {"aliquot_tag": "ALQ_f4de481b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.WGS.Nbc C3L-05908 AML WGS buccal_normal CPT0326940002 CPT0326940002.WholeGenome.RP-2158.bam 53174368213 BAM submitted_aligned CPTAC3 e016a6af-ec34-4458-abb6-9919490547fb cfe0f1139c79d31384329d2931f747d7 {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05908.WGS.Nbc.hg38 C3L-05908 AML WGS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wgs_gdc_realn.bam 156212712773 BAM harmonized CPTAC3 7bef082d-803e-45b2-b53e-5a1399bf1b5c 34cc2456cf0ae64d6093a6ff7d00623a {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05908.WGS.Tbm C3L-05908 AML WGS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeGenome.RP-2158.bam 46811904451 BAM submitted_aligned CPTAC3 9505c88e-d674-4bfe-b33c-0b0cde5e1412 a9f816f32240343a64c489bdea086dcb {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.WGS.Tbm.hg38 C3L-05908 AML WGS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wgs_gdc_realn.bam 141851528279 BAM harmonized CPTAC3 bb0e880d-d80c-4380-87d3-ee42c919d1cb 11df54b6e4a0ddf7815960ae16510e25 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.WXS.Nbc C3L-05908 AML WXS buccal_normal CPT0326940002 CPT0326940002.WholeExome.RP-1303.bam 25970906291 BAM submitted_aligned CPTAC3 d2610648-bcf0-46c4-b335-a33b90a1d16b 79d0a492049589d0cda89339dfad7106 {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-05908.WXS.Nbc.hg38 C3L-05908 AML WXS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wxs_gdc_realn.bam 35730190416 BAM harmonized CPTAC3 75eb2cb6-1dc2-4830-8a38-415e4fe1d03c 98f60c535c7b069b5746547e9a385bd0 {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-05908.WXS.Tbm C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeExome.RP-1303.bam 21302425000 BAM submitted_aligned CPTAC3 ef626016-61b3-49ec-b3cb-5be53dc4ebe7 913f591a2a0c30d7778813b189ae9377 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-05908.WXS.Tbm.hg38 C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wxs_gdc_realn.bam 29849365051 BAM harmonized CPTAC3 24bc77be-7a63-4942-a438-31028cc4fea9 89a4c09d505f0ce5d0d7eb62879fe6b6 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06061.MethArray.Green.Tbm C3L-06061 AML Methylation_Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4d05bfb3-9c0d-4766-98f1-9d1f86cda575 6eb3165b1f380d36d2a73ce24a95c68f {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.MethArray.Red.Tbm C3L-06061 AML Methylation_Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 197ccda7-f444-4f02-bdc3-ce18ae6c4889 c6ba9d606744484d8c0265333d156fac {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.miRNA-Seq.S53_L008_R1.Tbm C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 210331_UNC31-K00269_0297_AHKCFKBBXY_GAGTGG_S53_L008_R1_001.unaln.bam 285259644 BAM S53_L008_R1 submitted_unaligned CPTAC3 cfe69a28-e93d-4b5f-96e4-cdecc79dede1 f72e798d4b3ce098745ec927b1899c98 {"aliquot_tag": "ALQ_56f937a8", "sample": "S53", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.miRNA-Seq.Tbm.hg38 C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 c0c570e3-d0b6-4bbd-88c8-a988499694d4_mirnaseq_gdc_realn.bam 301265191 BAM harmonized CPTAC3 72aebe03-b049-43ce-821b-26bfaa7d79cf 512a2117f5261aeefd5f5020222f137c {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.RNA-Seq.chimeric.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.chimeric.gdc_realn.bam 108285959 BAM chimeric harmonized CPTAC3 f112773b-980d-4c65-99fc-302938eb49ff 3d7e66dbfc8b80d775e8616a0eb313ee {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.RNA-Seq.genomic.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.genomic.gdc_realn.bam 8059507252 BAM genomic harmonized CPTAC3 045dbae3-457c-4f47-b108-2c57b4d6831e 38feaae466b1240dbcd535e351a63968 {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.RNA-Seq.S9_L003_R1.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R1_001.fastq.gz 3980290410 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 005d06a5-42a7-4ea5-ba2a-9bbbf8295f42 5cc0ad663c28f3b522c523cdbaa45c8b {"aliquot_tag": "ALQ_56f937a8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.RNA-Seq.S9_L003_R2.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R2_001.fastq.gz 4233823990 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 8f38d303-fb14-433f-8cc2-b6ea37044a4f dbd4e3b6907bbb5371c210016903a73f {"aliquot_tag": "ALQ_56f937a8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.RNA-Seq.transcriptome.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.transcriptome.gdc_realn.bam 11616850377 BAM transcriptome harmonized CPTAC3 5d2cc8f3-a5cc-453c-8568-0edab80bb065 eca36d716ecdb1130ed0b29b40169e81 {"aliquot_tag": "ALQ_56f937a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.WGS.Nbc C3L-06061 AML WGS buccal_normal CPT0326440002 CPT0326440002.WholeGenome.RP-2158.bam 45038125820 BAM submitted_aligned CPTAC3 580ee243-90ee-4387-ae82-44f2d90a6097 6fa528af9dc9078f6cc5bda1a5cac64c {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06061.WGS.Nbc.hg38 C3L-06061 AML WGS buccal_normal CPT0326440002 d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wgs_gdc_realn.bam 133685404348 BAM harmonized CPTAC3 d3aa2183-2a2b-49cb-94aa-722bb084d738 30d122cee6434aaf2b853f368c0185a5 {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06061.WGS.Tbm C3L-06061 AML WGS tumor_bone_marrow CPT0326230002 CPT0326230002.WholeGenome.RP-2158.bam 44818890902 BAM submitted_aligned CPTAC3 9eb34b24-719a-44b8-823a-fb559e0eeafb e3d505b65937f21dfe7188296e5eba27 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.WGS.Tbm.hg38 C3L-06061 AML WGS tumor_bone_marrow CPT0326230002 c1ddcce6-a66e-47be-a293-652a21b03956_wgs_gdc_realn.bam 127949661212 BAM harmonized CPTAC3 df2b1538-16cb-4e8b-8347-592204bd6de2 9e3c53d99947c78c76ab7e3ae2050a63 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.WXS.Nbc C3L-06061 AML WXS buccal_normal CPT0326440002 CPT0326440002.WholeExome.RP-1303.bam 32063891291 BAM submitted_aligned CPTAC3 94c26fe2-74ee-4938-8fac-40751f5f4ddc 162c87af051423b795b0cce76ca328a2 {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06061.WXS.Nbc.hg38 C3L-06061 AML WXS buccal_normal CPT0326440002 d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wxs_gdc_realn.bam 43881323457 BAM harmonized CPTAC3 070f59df-e71c-4c18-b973-c155ce3a5387 884830626d9dfe501a60e1ba9cffa527 {"aliquot_tag": "ALQ_80a0d4b5", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06061.WXS.Tbm C3L-06061 AML WXS tumor_bone_marrow CPT0326230002 CPT0326230002.WholeExome.RP-1303.bam 24918016369 BAM submitted_aligned CPTAC3 e54485dd-b674-44d6-98a8-e56cec710939 d7292cecabab3599cc5b093f91690e37 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06061.WXS.Tbm.hg38 C3L-06061 AML WXS tumor_bone_marrow CPT0326230002 c1ddcce6-a66e-47be-a293-652a21b03956_wxs_gdc_realn.bam 34828076310 BAM harmonized CPTAC3 66892cd4-c8b6-433a-9324-1051b3fb8b30 398c4af53d84455ac83aecb32de1cc09 {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06063.MethArray.Green.Tbm C3L-06063 AML Methylation_Array tumor_bone_marrow CPT0326000002 205555380155_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 5c411da8-4b41-46ac-a3fd-bdf6c51f70ef f2d89adc27c680d97cc5f650e65455cf {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.MethArray.Red.Tbm C3L-06063 AML Methylation_Array tumor_bone_marrow CPT0326000002 205555380155_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 e849d399-7c8f-44ac-ae37-b4ed77c54aa6 afaa0e0aaf33cf6b9cc7a58bb1e20bff {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.miRNA-Seq.S18_L001_R1.Tbm C3L-06063 AML miRNA-Seq tumor_bone_marrow CPT0326010002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTTTCG_S18_L001_R1_001.unaln.bam 418166477 BAM S18_L001_R1 submitted_unaligned CPTAC3 6ccba838-5ba7-452d-a327-67b1de52adb5 0b7a7fb85802fc0ea8a0ab0f5242eb48 {"aliquot_tag": "ALQ_d3d119d3", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.miRNA-Seq.Tbm.hg38 C3L-06063 AML miRNA-Seq tumor_bone_marrow CPT0326010002 9de0e317-ac3a-44e5-9f55-48d30c38ea3d_mirnaseq_gdc_realn.bam 440455591 BAM harmonized CPTAC3 c269c69d-af10-46c8-ad86-036ae1036c7c c03b37fc4ffa70bf60366170df5b4267 {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.RNA-Seq.chimeric.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.chimeric.gdc_realn.bam 127867626 BAM chimeric harmonized CPTAC3 ee29007a-e02b-4ea2-8eec-cc5685395d37 fc231bec8d634cc431eaad3ad7c87c02 {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.RNA-Seq.genomic.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.genomic.gdc_realn.bam 7549097441 BAM genomic harmonized CPTAC3 86dd292a-526f-4a8c-844d-472f4311032c 7562a06c3ce71f4da7da8e8b7036c84a {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.RNA-Seq.S11_L003_R1.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R1_001.fastq.gz 3718330896 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 cea7d79a-f245-4cff-adc5-8b40e27d01ff 88280f41cd98e2ee4da43daa44115b18 {"aliquot_tag": "ALQ_d3d119d3", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.RNA-Seq.S11_L003_R2.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R2_001.fastq.gz 4003836171 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 d0b88942-9ee9-4d23-ac4a-1f6f6c466fd6 99acf480d377674c911b5e9f11efaef2 {"aliquot_tag": "ALQ_d3d119d3", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.RNA-Seq.transcriptome.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.transcriptome.gdc_realn.bam 9899861331 BAM transcriptome harmonized CPTAC3 f4d3b2e1-ed57-42ca-9b1f-ab9462453f82 8ea1c63d4c45c7d40c7c11f7cd27b225 {"aliquot_tag": "ALQ_d3d119d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.WGS.Nbc C3L-06063 AML WGS buccal_normal CPT0326100003 CPT0326100003.WholeGenome.RP-2158.bam 53597520767 BAM submitted_aligned CPTAC3 d0353e99-4031-4dc2-b786-d048080d503a aef1d7a1a4aad5e605682300c33f9755 {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06063.WGS.Nbc.hg38 C3L-06063 AML WGS buccal_normal CPT0326100003 72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wgs_gdc_realn.bam 162794371517 BAM harmonized CPTAC3 b3d51cee-b87d-49f6-ab1d-58196bb20849 3952bc2bcced6abc120d617696a9575a {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06063.WGS.Tbm C3L-06063 AML WGS tumor_bone_marrow CPT0326000002 CPT0326000002.WholeGenome.RP-2158.bam 50051809682 BAM submitted_aligned CPTAC3 80bdc8c6-d394-47f5-b8a6-26a91cdc18f5 c6b86983db456bb71db8e1a085209dc6 {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.WGS.Tbm.hg38 C3L-06063 AML WGS tumor_bone_marrow CPT0326000002 604ee056-6daa-49f6-a5d1-b008305502b6_wgs_gdc_realn.bam 150586264993 BAM harmonized CPTAC3 e8f9b051-60b0-4579-b572-7b85f6a049e9 6ca61890287abee39b0726074eaacaa3 {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.WXS.Nbc C3L-06063 AML WXS buccal_normal CPT0326100003 CPT0326100003.WholeExome.RP-1303.bam 26383107486 BAM submitted_aligned CPTAC3 c053b5ea-1faa-4345-8f02-dd351cbde43a 6a684ab2a73c3e6c45d2256fd498ea29 {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06063.WXS.Nbc.hg38 C3L-06063 AML WXS buccal_normal CPT0326100003 72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wxs_gdc_realn.bam 36806573391 BAM harmonized CPTAC3 aa330441-41ff-469b-ace7-099764cd0d6a 129f9bb7bfc9e894e7b058f94267e888 {"aliquot_tag": "ALQ_52ead350", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06063.WXS.Tbm C3L-06063 AML WXS tumor_bone_marrow CPT0326000002 CPT0326000002.WholeExome.RP-1303.bam 23528685414 BAM submitted_aligned CPTAC3 eaddc68b-983f-46b0-91f2-56adf6ef2202 cadc1ddbbbcdd774446cf06687595508 {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06063.WXS.Tbm.hg38 C3L-06063 AML WXS tumor_bone_marrow CPT0326000002 604ee056-6daa-49f6-a5d1-b008305502b6_wxs_gdc_realn.bam 32733625918 BAM harmonized CPTAC3 91a0f789-f4cd-444a-b0d2-da59c69fb392 22be2ea7956fa2abd2af93c98578921d {"aliquot_tag": "ALQ_eeb13063", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06064.MethArray.Green.Tbm C3L-06064 AML Methylation_Array tumor_bone_marrow CPT0326760002 205555390119_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d85bcae2-cd85-4757-aba8-14b715276c73 842f9cadd4b35ee3b9282a639221f6e9 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.MethArray.Red.Tbm C3L-06064 AML Methylation_Array tumor_bone_marrow CPT0326760002 205555390119_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e791a789-68cf-443a-a2e7-668b52ab6174 bcc7e84913f74a58ce847ecfe05f2d55 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.miRNA-Seq.S36_L008_R1.Tbm C3L-06064 AML miRNA-Seq tumor_bone_marrow CPT0326770002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATGAGC_S36_L008_R1_001.unaln.bam 303511829 BAM S36_L008_R1 submitted_unaligned CPTAC3 48ae323a-8c8e-4598-949e-03a86a0e62db a4a1f14ca2f90d41c69786ee637cdf22 {"aliquot_tag": "ALQ_4194dccb", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.miRNA-Seq.Tbm.hg38 C3L-06064 AML miRNA-Seq tumor_bone_marrow CPT0326770002 89a056cf-8357-465f-94b5-825c8d9ed9f9_mirnaseq_gdc_realn.bam 315197105 BAM harmonized CPTAC3 eed274d4-eb3e-4428-8ae0-8d9e3f0cf7f8 67d190ae6362c92393f6d63367309285 {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.RNA-Seq.chimeric.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.chimeric.gdc_realn.bam 156851411 BAM chimeric harmonized CPTAC3 dabd7313-0a03-4a75-b070-b12b77fd4845 f80741f20a9009f1721ea6bc74b7d86b {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.RNA-Seq.genomic.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.genomic.gdc_realn.bam 7576158382 BAM genomic harmonized CPTAC3 89cf57d1-1d1b-4456-8578-fa898a5a053f 73dad8052ba8bd5367e600c5db0df8c2 {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.RNA-Seq.S8_L002_R1.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R1_001.fastq.gz 3804957009 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 dca6015e-b9bf-4f95-bc57-dd1dcf9c8df6 644852782834649fdde13c1ada234789 {"aliquot_tag": "ALQ_4194dccb", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.RNA-Seq.S8_L002_R2.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R2_001.fastq.gz 4107726492 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 a5178138-97f9-4d77-8c44-2497d38911dc 76f4753e59d6bc73143d35647ed87453 {"aliquot_tag": "ALQ_4194dccb", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.RNA-Seq.transcriptome.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.transcriptome.gdc_realn.bam 10134884832 BAM transcriptome harmonized CPTAC3 65449d92-d8fd-4076-90fb-27f31279c556 20e223f75a4ab37bf62283cfa45d6e21 {"aliquot_tag": "ALQ_4194dccb", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.WGS.Nbc C3L-06064 AML WGS buccal_normal CPT0326860003 CPT0326860003.WholeGenome.RP-2158.bam 47646943334 BAM submitted_aligned CPTAC3 5de8d6ee-bb3a-4099-bcee-1ac3127bed6b 3baaabf58a329eea102129ea82d14db1 {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06064.WGS.Nbc.hg38 C3L-06064 AML WGS buccal_normal CPT0326860003 6455cf06-0477-4d1e-b874-c5886e4e1137_wgs_gdc_realn.bam 148389243797 BAM harmonized CPTAC3 c7599d97-a30f-463f-82c9-b3f8dfc5abbe 78e8d679bd433df6ba48c90f513dce8a {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06064.WGS.Tbm C3L-06064 AML WGS tumor_bone_marrow CPT0326760002 CPT0326760002.WholeGenome.RP-2158.bam 60154250259 BAM submitted_aligned CPTAC3 796237ad-048c-402e-a86f-be0aece8f77a a6aff1177420d1bcb07b52dc46fee289 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.WGS.Tbm.hg38 C3L-06064 AML WGS tumor_bone_marrow CPT0326760002 0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wgs_gdc_realn.bam 179277085556 BAM harmonized CPTAC3 57ed6f78-7ead-42e1-91d1-8922419b163c 5f538c00cb6bf127e3e5e1cd840182b6 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.WXS.Nbc C3L-06064 AML WXS buccal_normal CPT0326860003 CPT0326860003.WholeExome.RP-1303.bam 27382952577 BAM submitted_aligned CPTAC3 7f3261f9-4f59-4ce5-84a3-d3d1732b0f9d 22d96fdb13d7c7dcf0279063f9e687ca {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06064.WXS.Nbc.hg38 C3L-06064 AML WXS buccal_normal CPT0326860003 6455cf06-0477-4d1e-b874-c5886e4e1137_wxs_gdc_realn.bam 38310534027 BAM harmonized CPTAC3 102d71ec-b7c0-4996-a48f-84e52499162d 45c2f20dc9111c07dd9b5469ecc8b5d5 {"aliquot_tag": "ALQ_faa57738", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06064.WXS.Tbm C3L-06064 AML WXS tumor_bone_marrow CPT0326760002 CPT0326760002.WholeExome.RP-1303.bam 26722565833 BAM submitted_aligned CPTAC3 a2bd75c1-e577-49b0-b5ae-6d3d650693ed 998b8c369c3fcef6ba214ff78d5b82ac {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06064.WXS.Tbm.hg38 C3L-06064 AML WXS tumor_bone_marrow CPT0326760002 0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wxs_gdc_realn.bam 37309780760 BAM harmonized CPTAC3 6f021375-1a8e-4d1b-afb1-87fdf2a37bb2 b42fd632380a61e23c684af1893b4167 {"aliquot_tag": "ALQ_7cf4f57b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06066.MethArray.Green.Tbm C3L-06066 AML Methylation_Array tumor_bone_marrow CPT0357240002 205555380179_R07C01_Grn.idat 13677960 IDAT Green NA CPTAC3 9e33f0ed-7fa0-48b8-a910-44822080d435 88615e964fe9863484eb12bc40096648 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.MethArray.Red.Tbm C3L-06066 AML Methylation_Array tumor_bone_marrow CPT0357240002 205555380179_R07C01_Red.idat 13677960 IDAT Red NA CPTAC3 c97e0731-c9d3-4e78-9334-82f9acfef6cc aea871923b9db88875ad92c24449b916 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.miRNA-Seq.S47_L008_R1.Tbm C3L-06066 AML miRNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGGAAT_S47_L008_R1_001.unaln.bam 322066097 BAM S47_L008_R1 submitted_unaligned CPTAC3 976b3234-2b27-49bf-92a7-26eb02ad7dab 7178032d101a09bf537a06e12be80ce7 {"aliquot_tag": "ALQ_c72b1cb5", "sample": "S47", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.miRNA-Seq.Tbm.hg38 C3L-06066 AML miRNA-Seq tumor_bone_marrow CPT0357250002 4e934679-7371-4d9c-9af1-efbe8f0244eb_mirnaseq_gdc_realn.bam 333344963 BAM harmonized CPTAC3 ee812da5-17d6-435e-9270-49c862f026aa be4eabd9f165e188ce5e5aaec14ba085 {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.RNA-Seq.chimeric.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.chimeric.gdc_realn.bam 46123884 BAM chimeric harmonized CPTAC3 697866f1-68f4-415f-bbee-8dfbd63406e8 034c86a92fa329b5e2a170f116b0548e {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.RNA-Seq.genomic.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.genomic.gdc_realn.bam 9156038467 BAM genomic harmonized CPTAC3 f1acb2c3-ee3e-4163-844b-2168eb39c07f 2fd84ea02e3038275f6a4e04202fd11e {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.RNA-Seq.S21_L006_R1.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3526785750 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 aca652c7-2628-4911-b25c-6c1796845e9f fb6fc15d437c046478f9d8bc74ebb0e3 {"aliquot_tag": "ALQ_c72b1cb5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.RNA-Seq.S21_L006_R2.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3869519987 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 cbe87ee5-b45b-41f0-9a70-0b3ed678013a 8a5206d8a40f6c19ff4f602fe1a4abd8 {"aliquot_tag": "ALQ_c72b1cb5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.RNA-Seq.transcriptome.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.transcriptome.gdc_realn.bam 12432280891 BAM transcriptome harmonized CPTAC3 c993364e-ea71-4647-be46-d96c84c198b4 38ff2bb6581e65bafc1014e2045667e7 {"aliquot_tag": "ALQ_c72b1cb5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.WGS.Nbc C3L-06066 AML WGS buccal_normal CPT0357210003 CPT0357210003.WholeGenome.RP-2158.bam 62584670310 BAM submitted_aligned CPTAC3 3254a2b2-7ca8-4335-a5ac-d042c99b3d23 158eaeeef6b4b7461813ad45cc34b40b {"aliquot_tag": "ALQ_45ac8ae3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06066.WGS.Nbc.hg38 C3L-06066 AML WGS buccal_normal CPT0357210003 715ad9e3-20b9-4d61-ac08-9e270e702221_wgs_gdc_realn.bam 187368132645 BAM harmonized CPTAC3 f015cef4-ab99-40e9-8dcc-17dd4af0bbb4 febfad9a8de017901b69ae5a1bd7f963 {"aliquot_tag": "ALQ_45ac8ae3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06066.WGS.Tbm C3L-06066 AML WGS tumor_bone_marrow CPT0357240002 CPT0357240002.WholeGenome.RP-2158.bam 46720735315 BAM submitted_aligned CPTAC3 a2c661e4-9409-4084-ab6b-77d736af6b4c 6789f53a73335a9daf11808381fb6672 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.WGS.Tbm.hg38 C3L-06066 AML WGS tumor_bone_marrow CPT0357240002 d00c0f65-d9dd-43d0-adb6-d3dd41f03940_wgs_gdc_realn.bam 141804091849 BAM harmonized CPTAC3 ef8c9afd-27b8-4c74-abda-f2a080cbe817 aa196d974718a88438cea144ba530737 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.WXS.Tbm C3L-06066 AML WXS tumor_bone_marrow CPT0357240002 CPT0357240002.WholeExome.RP-1303.bam 25806421192 BAM submitted_aligned CPTAC3 447f6532-6aac-471b-9ec4-c058e4e3508b 6170bbd9ddcf95c5bee50e675adc91c4 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06066.WXS.Tbm.hg38 C3L-06066 AML WXS tumor_bone_marrow CPT0357240002 d00c0f65-d9dd-43d0-adb6-d3dd41f03940_wxs_gdc_realn.bam 35975603903 BAM harmonized CPTAC3 d306a386-fbc8-4b3c-aaba-62bafef3fc4f 505d57cef384aa54bfd0cab30c25bac6 {"aliquot_tag": "ALQ_fa4b3505", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06067.MethArray.Green.Tbm C3L-06067 AML Methylation_Array tumor_bone_marrow CPT0326980002 205555390164_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e740268d-b2cb-47ad-9dce-d477a604a168 4626bf80eb40376bd8287324c3634ad0 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.MethArray.Red.Tbm C3L-06067 AML Methylation_Array tumor_bone_marrow CPT0326980002 205555390164_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 7cbdb029-d1f6-4df2-a32c-f92dfcfab352 57d3e963448a6a9101312846de0fcb33 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.miRNA-Seq.S38_L008_R1.Tbm C3L-06067 AML miRNA-Seq tumor_bone_marrow CPT0326990002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAAAAG_S38_L008_R1_001.unaln.bam 250003310 BAM S38_L008_R1 submitted_unaligned CPTAC3 a57f59e0-0e1d-4bcc-a6f5-a0e3ad4df017 48f248e664d1ae8847c05b8725ec394b {"aliquot_tag": "ALQ_c4ae03da", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.miRNA-Seq.Tbm.hg38 C3L-06067 AML miRNA-Seq tumor_bone_marrow CPT0326990002 0ff47398-678b-4d0e-8763-f24dbcbe9edf_mirnaseq_gdc_realn.bam 260044163 BAM harmonized CPTAC3 a9d7f8e6-f149-4738-b29b-60e892d1518d e49ae0726bbdd04dc47458b45c874e30 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.RNA-Seq.chimeric.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.chimeric.gdc_realn.bam 130652719 BAM chimeric harmonized CPTAC3 cdb54dcc-c900-4bb2-b32b-7265c2b84e7e 2d7ff1fbc73be16976fc99c76bb81919 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.RNA-Seq.genomic.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.genomic.gdc_realn.bam 5793716140 BAM genomic harmonized CPTAC3 76fdcab6-4430-4d0f-8ce3-b9a9f8b2e543 1b66b24d6a051d3bdd73de89c54c5f42 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.RNA-Seq.S7_L002_R1.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R1_001.fastq.gz 2916957806 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 89954f3c-da45-438a-b8a2-7dc1ad42230c 26dfc5c5b58d5d860460f09156127f35 {"aliquot_tag": "ALQ_c4ae03da", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.RNA-Seq.S7_L002_R2.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R2_001.fastq.gz 3143692869 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 65b1537c-fbda-4372-b0a8-e3d8439618ac bd0d0e84d5c5fe95a89e7f5eaf59a31d {"aliquot_tag": "ALQ_c4ae03da", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.RNA-Seq.transcriptome.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.transcriptome.gdc_realn.bam 9999522708 BAM transcriptome harmonized CPTAC3 4a0d208c-d235-4959-868f-5b67def35068 f48f2d5b6903e1aa67b84089ad117124 {"aliquot_tag": "ALQ_c4ae03da", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.WGS.Nbc C3L-06067 AML WGS buccal_normal CPT0327010002 CPT0327010002.WholeGenome.RP-2158.bam 63299846865 BAM submitted_aligned CPTAC3 80171bd1-5ae0-419a-8bec-e17eb811e481 c323e8e2b15019f5e050a67165d74b15 {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06067.WGS.Nbc.hg38 C3L-06067 AML WGS buccal_normal CPT0327010002 cb29e5c2-b79b-4190-b779-a0279f80e165_wgs_gdc_realn.bam 190916611988 BAM harmonized CPTAC3 dfd184ff-b179-4ab5-9587-83ed28776f05 1a0500ea36a7d6746e290e484bc1c2d5 {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06067.WGS.Tbm C3L-06067 AML WGS tumor_bone_marrow CPT0326980002 CPT0326980002.WholeGenome.RP-2158.bam 51421134127 BAM submitted_aligned CPTAC3 7c2f50d9-3ffa-41c3-9a44-0ab9fbaaa51e 622147b8d426a0eb74e2130c579cee75 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.WGS.Tbm.hg38 C3L-06067 AML WGS tumor_bone_marrow CPT0326980002 f522dd61-ba96-4a7c-b014-8702b6f2f61d_wgs_gdc_realn.bam 152940156602 BAM harmonized CPTAC3 7fa81a7c-59ad-4ece-a675-850df0bae7c2 59c56d14f2d16d4b48f122b55766c7da {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.WXS.Nbc C3L-06067 AML WXS buccal_normal CPT0327010002 CPT0327010002.WholeExome.RP-1303.bam 28138809935 BAM submitted_aligned CPTAC3 d2fcb3e6-ffa5-46dc-bac5-98b460e0110a 8beb61b3c7fe37622c55b6b384088b9a {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06067.WXS.Nbc.hg38 C3L-06067 AML WXS buccal_normal CPT0327010002 cb29e5c2-b79b-4190-b779-a0279f80e165_wxs_gdc_realn.bam 38364605151 BAM harmonized CPTAC3 57e18e83-d70b-4032-8ffd-f1406162100c 7b0a1a88edaf3b3a23b0ef97dd933fd2 {"aliquot_tag": "ALQ_75a61267", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06067.WXS.Tbm C3L-06067 AML WXS tumor_bone_marrow CPT0326980002 CPT0326980002.WholeExome.RP-1303.bam 27141790097 BAM submitted_aligned CPTAC3 325a8e13-4f00-4e59-b48c-6731edc1a592 dfc9892184da832ca3648d5a243fb0c1 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06067.WXS.Tbm.hg38 C3L-06067 AML WXS tumor_bone_marrow CPT0326980002 f522dd61-ba96-4a7c-b014-8702b6f2f61d_wxs_gdc_realn.bam 36584986067 BAM harmonized CPTAC3 0efcd816-766f-4cdb-b30e-1c99b7818e59 a54ee08d2a4afe7525952924228410e5 {"aliquot_tag": "ALQ_f9ce2a6a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06068.MethArray.Green.Tbm C3L-06068 AML Methylation_Array tumor_bone_marrow CPT0326620002 205555390164_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6e81144c-4ae5-4d68-85c1-9b9a35a28f4c 3d1d688483357555deed93a1e557a00b {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.MethArray.Red.Tbm C3L-06068 AML Methylation_Array tumor_bone_marrow CPT0326620002 205555390164_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 5e7e816b-dcd5-4f14-ac05-ff6788bfdee7 854a0554d0700777caf7fe84411fa978 {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.miRNA-Seq.S35_L008_R1.Tbm C3L-06068 AML miRNA-Seq tumor_bone_marrow CPT0326630002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACTGAT_S35_L008_R1_001.unaln.bam 324256416 BAM S35_L008_R1 submitted_unaligned CPTAC3 ff8b73ac-dbd5-45b9-b196-ec0f48c0c007 42abbf8fe675491f980ccc0a623e4330 {"aliquot_tag": "ALQ_7f48a9ae", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06068.miRNA-Seq.Tbm.hg38 C3L-06068 AML miRNA-Seq tumor_bone_marrow CPT0326630002 aa56926f-e975-4d12-888c-58b27cdef030_mirnaseq_gdc_realn.bam 337334228 BAM harmonized CPTAC3 10ade2b7-5023-4003-a46b-3279db2e5712 b1c0ee0f9faeff5dc4add8c47943b1ae {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06068.RNA-Seq.chimeric.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.chimeric.gdc_realn.bam 178792879 BAM chimeric harmonized CPTAC3 b118a971-9f6b-4625-95d2-79a7247407ca 03df04b29a02d29be35c9fcfbf6eeb63 {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.RNA-Seq.genomic.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.genomic.gdc_realn.bam 6844058343 BAM genomic harmonized CPTAC3 3ad851fa-7d91-45fd-b114-80243f1e04df ff94a2f54a2df16f3fcb11d0f00d0f93 {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.RNA-Seq.S6_L002_R1.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R1_001.fastq.gz 3486498695 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 3c677a8d-3ac0-4ae0-abb2-c7df39a91396 a10bca04a94ebee138fbe9f3fc1e608f {"aliquot_tag": "ALQ_7f48a9ae", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06068.RNA-Seq.S6_L002_R2.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R2_001.fastq.gz 3686557876 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 595a29b0-a6b9-4462-b007-c0bbaa069d36 c7dd4500cf03b095720405917f3281db {"aliquot_tag": "ALQ_7f48a9ae", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06068.RNA-Seq.transcriptome.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.transcriptome.gdc_realn.bam 10250119743 BAM transcriptome harmonized CPTAC3 fc3d5db8-4296-4def-8eb0-6f133f58890d 3252c1f068705d8d2ccff34ad63c0e8d {"aliquot_tag": "ALQ_7f48a9ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.WGS.Nbc C3L-06068 AML WGS buccal_normal CPT0326720003 CPT0326720003.WholeGenome.RP-2158.bam 49640336441 BAM submitted_aligned CPTAC3 a7cfe390-04fe-4688-85fe-267603eea235 deb843257083fa909f2f0fc18bdd6abd {"aliquot_tag": "ALQ_fe73632d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06068.WGS.Nbc.hg38 C3L-06068 AML WGS buccal_normal CPT0326720003 97ab5be9-f390-43ec-8d39-bdd5dbfb42fd_wgs_gdc_realn.bam 146224563454 BAM harmonized CPTAC3 f1b8e0e8-78c2-4480-b230-d7d243dcae43 8d87540f830386555badfef8b11d308e {"aliquot_tag": "ALQ_fe73632d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06068.WGS.Tbm C3L-06068 AML WGS tumor_bone_marrow CPT0326620002 CPT0326620002.WholeGenome.RP-2158.bam 47741264692 BAM submitted_aligned CPTAC3 8f7b43f4-955f-47ed-b1c0-1d3c213960c5 efd1b6e3064740691296088b7a760bf9 {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.WGS.Tbm.hg38 C3L-06068 AML WGS tumor_bone_marrow CPT0326620002 c8241e1e-f164-4510-9868-d017ca302616_wgs_gdc_realn.bam 141454550444 BAM harmonized CPTAC3 aa7b5688-3e56-4228-becf-ccb94c76f378 78ccbb6be2c6d8932e1192d2efd02948 {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.WXS.Tbm C3L-06068 AML WXS tumor_bone_marrow CPT0326620002 CPT0326620002.WholeExome.RP-1303.bam 25131898026 BAM submitted_aligned CPTAC3 705d0735-bf87-40f6-b451-02f29f4e7920 ff4e2f156d956f2862bc3edc7feadd3b {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06068.WXS.Tbm.hg38 C3L-06068 AML WXS tumor_bone_marrow CPT0326620002 c8241e1e-f164-4510-9868-d017ca302616_wxs_gdc_realn.bam 34521151968 BAM harmonized CPTAC3 dfc4764a-1578-4e82-afad-b6f49abf1732 63ded636c7129e529f737aa6fbc2caaf {"aliquot_tag": "ALQ_4228801e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06069.MethArray.Green.Tbm C3L-06069 AML Methylation_Array tumor_bone_marrow CPT0326480002 205555390174_R04C01_Grn.idat 13677965 IDAT Green NA CPTAC3 13d7236e-23d9-4789-9b51-b869a122087a b03c56c6969c0c8451ba7e4a1ac00c2f {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.MethArray.Red.Tbm C3L-06069 AML Methylation_Array tumor_bone_marrow CPT0326480002 205555390174_R04C01_Red.idat 13677965 IDAT Red NA CPTAC3 895e134f-9e5b-4960-a188-7f2e23583831 796be5c959b7d86b71cfd710c1bfb275 {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.miRNA-Seq.S54_L008_R1.Tbm C3L-06069 AML miRNA-Seq tumor_bone_marrow CPT0326490002 210331_UNC31-K00269_0297_AHKCFKBBXY_GGTAGC_S54_L008_R1_001.unaln.bam 417794877 BAM S54_L008_R1 submitted_unaligned CPTAC3 78e537d0-0ca0-497a-98d1-96ba73ff6676 230a7dbc4e4b10f9d5a0f4348d1e6146 {"aliquot_tag": "ALQ_78301004", "sample": "S54", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.miRNA-Seq.Tbm.hg38 C3L-06069 AML miRNA-Seq tumor_bone_marrow CPT0326490002 03604858-e119-48f8-a163-cd958b763427_mirnaseq_gdc_realn.bam 442088582 BAM harmonized CPTAC3 e97a811f-3ded-4679-bcbb-1d509fa0756d b7fa6aa0c5eece9a41bfdff7eda0cd52 {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.RNA-Seq.chimeric.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.chimeric.gdc_realn.bam 162952070 BAM chimeric harmonized CPTAC3 9fa49615-8105-45d6-81aa-351d697a4cc0 c12def11978125440512d7213041e97d {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.RNA-Seq.genomic.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.genomic.gdc_realn.bam 7143808309 BAM genomic harmonized CPTAC3 b9b615dc-3e66-4d8d-9fad-87b72c3a3df3 7c37ef28cbdd923dad6c9dcc030de9c2 {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.RNA-Seq.S12_L003_R1.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R1_001.fastq.gz 3577663162 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 09a525b6-cb9f-43eb-9c3c-a1a77e10456c 4b94abcc256d4e1148c37ca3687b1891 {"aliquot_tag": "ALQ_78301004", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.RNA-Seq.S12_L003_R2.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R2_001.fastq.gz 3899204966 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 8a9086a9-e3d9-408d-aeb8-162c800d364c 765ee9118d2efb5e5c1820776c160d58 {"aliquot_tag": "ALQ_78301004", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.RNA-Seq.transcriptome.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.transcriptome.gdc_realn.bam 9747365613 BAM transcriptome harmonized CPTAC3 1cd2e81c-cbf3-4a27-8fb0-ed486d2b00dc 6a75328dc3c95ffa80541f56bad725a1 {"aliquot_tag": "ALQ_78301004", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.WGS.Nbc C3L-06069 AML WGS buccal_normal CPT0326580003 CPT0326580003.WholeGenome.RP-2158.bam 53615171679 BAM submitted_aligned CPTAC3 e3cfe7e9-6e50-42fc-929d-bf43b981e320 dffe1549bd1f691e2b2fcdc782f5e6aa {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06069.WGS.Nbc.hg38 C3L-06069 AML WGS buccal_normal CPT0326580003 f15999aa-0027-403b-a9fc-a857a8d6a6f9_wgs_gdc_realn.bam 151945577645 BAM harmonized CPTAC3 fdc8d9db-7c70-44f3-b4bf-79729d61e81e f187987b67452499c0ee77c5dd086bdc {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06069.WGS.Tbm C3L-06069 AML WGS tumor_bone_marrow CPT0326480002 CPT0326480002.WholeGenome.RP-2158.bam 46010740514 BAM submitted_aligned CPTAC3 9a18c80e-e80d-4cbc-86df-0657b38f6ac2 139effafd536f80fe3d845fdc987b094 {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.WGS.Tbm.hg38 C3L-06069 AML WGS tumor_bone_marrow CPT0326480002 06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wgs_gdc_realn.bam 134457839495 BAM harmonized CPTAC3 6479fcbc-6431-49c3-bb94-71a681a7438f 32fab0d1c87f0b2eb06027199a69a91a {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.WXS.Nbc C3L-06069 AML WXS buccal_normal CPT0326580003 CPT0326580003.WholeExome.RP-1303.bam 18561670905 BAM submitted_aligned CPTAC3 9252d635-14f8-43ad-ad52-ee7f5cca3939 fded3cd361beec1bd499927deab16cb9 {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06069.WXS.Nbc.hg38 C3L-06069 AML WXS buccal_normal CPT0326580003 f15999aa-0027-403b-a9fc-a857a8d6a6f9_wxs_gdc_realn.bam 26206772341 BAM harmonized CPTAC3 0bc45139-a05c-4cb0-bbf0-3218db271cdb 7a67672061108ec8624ce67995e8c977 {"aliquot_tag": "ALQ_f90bda87", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06069.WXS.Tbm C3L-06069 AML WXS tumor_bone_marrow CPT0326480002 CPT0326480002.WholeExome.RP-1303.bam 25721247083 BAM submitted_aligned CPTAC3 8aa1f14e-449e-4d81-8958-07b59ac5be6d df12918bccbb89aa8afd50445dbd4edd {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06069.WXS.Tbm.hg38 C3L-06069 AML WXS tumor_bone_marrow CPT0326480002 06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wxs_gdc_realn.bam 35693747490 BAM harmonized CPTAC3 ea93f57a-46ae-421b-9902-3cb89ecb4202 029109bbb29ad8310c1f553eec8d49a4 {"aliquot_tag": "ALQ_455039b4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06070.MethArray.Green.Tbm C3L-06070 AML Methylation_Array tumor_bone_marrow CPT0326140002 205555380155_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 eb56e03b-a2b8-4e1d-9089-58464e359ed3 39e095bcdabe469d26c1798931caa512 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.MethArray.Red.Tbm C3L-06070 AML Methylation_Array tumor_bone_marrow CPT0326140002 205555380155_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 9a1c1f96-c8a3-48fb-bd1d-a69b2921d08a 4636dadd45351367a3b1f16be0ec94f9 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.miRNA-Seq.S48_L008_R1.Tbm C3L-06070 AML miRNA-Seq tumor_bone_marrow CPT0326150002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGTACG_S48_L008_R1_001.unaln.bam 249608659 BAM S48_L008_R1 submitted_unaligned CPTAC3 50e7cc38-f5dc-4a66-897b-3785cf126440 5bbf63ea2cbdc495c5760d7f00d042ae {"aliquot_tag": "ALQ_ed0d6cb6", "sample": "S48", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.miRNA-Seq.Tbm.hg38 C3L-06070 AML miRNA-Seq tumor_bone_marrow CPT0326150002 d276219f-aabe-4991-926e-cecbb171f87a_mirnaseq_gdc_realn.bam 261877772 BAM harmonized CPTAC3 43c1b86e-e24f-410b-a2c1-bb51a62f1e9d 8742bcc7d33adc40ae99d28b4cd3c44e {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.RNA-Seq.chimeric.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.chimeric.gdc_realn.bam 98661132 BAM chimeric harmonized CPTAC3 e855020c-e8d1-4cdf-b6ea-c76be592be4c eb8e79977023ee560a8d731457d2bcad {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.RNA-Seq.genomic.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.genomic.gdc_realn.bam 6510103232 BAM genomic harmonized CPTAC3 07f94ba3-56e7-4258-8b07-813bf2ba8c45 6afec7b17187577c68bb839e1b1ef046 {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.RNA-Seq.S10_L003_R1.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R1_001.fastq.gz 3218158809 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 e971ec7c-cdd4-4dc7-a1fc-4441d77fefc9 b7bf196035031901bf88e90fec032c00 {"aliquot_tag": "ALQ_ed0d6cb6", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.RNA-Seq.S10_L003_R2.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R2_001.fastq.gz 3422155076 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 ff2b4fc1-70a1-4d38-86a8-672a3a312966 ab10dc44806219cb7e6d648a999e0f8c {"aliquot_tag": "ALQ_ed0d6cb6", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.RNA-Seq.transcriptome.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.transcriptome.gdc_realn.bam 9383974723 BAM transcriptome harmonized CPTAC3 e9f168da-7a43-4379-a6cf-8df39e8b149b b8af96720959fe2fc274848445ae6ed0 {"aliquot_tag": "ALQ_ed0d6cb6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.WGS.Nbc C3L-06070 AML WGS buccal_normal CPT0326190002 CPT0326190002.WholeGenome.RP-2158.bam 59284431351 BAM submitted_aligned CPTAC3 77318481-475e-4851-a40d-4552f4fabe95 cdb341b276bbbbc10b6ac4d1401f2bc7 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06070.WGS.Nbc.hg38 C3L-06070 AML WGS buccal_normal CPT0326190002 6152d143-77fc-469a-825a-cc922a7793c3_wgs_gdc_realn.bam 180241304280 BAM harmonized CPTAC3 f3180940-67d0-4bcf-8e9a-0ddb4e4936c7 1d4bc4f9ff3d501fa8117cd5111873d9 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06070.WGS.Tbm C3L-06070 AML WGS tumor_bone_marrow CPT0326140002 CPT0326140002.WholeGenome.RP-2158.bam 58632330587 BAM submitted_aligned CPTAC3 4b2e026e-f472-49ff-89d5-c2f3d62f314f f91809af37e65042bbe1064b5fdc2fbf {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.WGS.Tbm.hg38 C3L-06070 AML WGS tumor_bone_marrow CPT0326140002 9107763d-3224-4001-960a-ffe32c9e53eb_wgs_gdc_realn.bam 176373227224 BAM harmonized CPTAC3 c3419350-e9c5-489f-beec-f35203a5c2a4 ecf42432721e187c66d6b76f672af609 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.WXS.Nbc C3L-06070 AML WXS buccal_normal CPT0326190002 CPT0326190002.WholeExome.RP-1303.bam 24159633216 BAM submitted_aligned CPTAC3 f0fead0b-d30a-4d7a-9718-6f06e4a2d027 8122204e3a830ad4b612216a638e5444 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06070.WXS.Nbc.hg38 C3L-06070 AML WXS buccal_normal CPT0326190002 6152d143-77fc-469a-825a-cc922a7793c3_wxs_gdc_realn.bam 33494030818 BAM harmonized CPTAC3 b11b88a5-4c4a-437d-8d74-99bdc25e5cfa 3e5e360d876666db56aca20e57e2dbb8 {"aliquot_tag": "ALQ_28fd81b7", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06070.WXS.Tbm C3L-06070 AML WXS tumor_bone_marrow CPT0326140002 CPT0326140002.WholeExome.RP-1303.bam 19926201297 BAM submitted_aligned CPTAC3 f5470787-646e-412f-84d8-03c775e68630 f6783bd386e15cf0defe38d421c00423 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06070.WXS.Tbm.hg38 C3L-06070 AML WXS tumor_bone_marrow CPT0326140002 9107763d-3224-4001-960a-ffe32c9e53eb_wxs_gdc_realn.bam 27486888087 BAM harmonized CPTAC3 b7b34294-8591-486f-98ed-da7a388edb83 41ba9b39ed0cdbc6b1ce56dd1c22b847 {"aliquot_tag": "ALQ_d06d4506", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06072.MethArray.Green.Tpb C3L-06072 AML Methylation_Array tumor_peripheral_blood CPT0369720002 205987780094_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 45add882-c9de-4103-aad4-b0d833abaab2 8acfea16d765bc9e0d0b565caca9eca3 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.MethArray.Red.Tpb C3L-06072 AML Methylation_Array tumor_peripheral_blood CPT0369720002 205987780094_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 4e3b3f20-b307-4c1a-97d3-29bc30b531f4 6e6d809104eea93edbac3a5118e1da76 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.miRNA-Seq.S44_L003_R1.Tpb C3L-06072 AML miRNA-Seq tumor_peripheral_blood CPT0369760002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATTCCT_S44_L003_R1_001.unaln.bam 230490283 BAM S44_L003_R1 submitted_unaligned CPTAC3 7f452937-e23d-469e-b23b-691129d3eee2 8b7a1a075ab33d8ee775336f692283b7 {"aliquot_tag": "ALQ_ef68b68", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.miRNA-Seq.Tpb.hg38 C3L-06072 AML miRNA-Seq tumor_peripheral_blood CPT0369760002 1b5999d5-1657-49f5-9e1e-6f63b3b2f985_mirnaseq_gdc_realn.bam 257242713 BAM harmonized CPTAC3 d58a4c3d-6b12-4fd1-843c-1e54dd4fb114 f7b6673b942a2752ed1250a67de24314 {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.RNA-Seq.chimeric.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.chimeric.gdc_realn.bam 689476770 BAM chimeric harmonized CPTAC3 a8188303-df13-4a4f-8bc8-1ee3084be6d7 d85d34c65de18f0f814a6261e6a5982a {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.RNA-Seq.genomic.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.genomic.gdc_realn.bam 7069676273 BAM genomic harmonized CPTAC3 40219852-bc64-4e7a-a575-13ec182a8d4b cef290d26af6de33ac9ec8ec8ff0b048 {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.RNA-Seq.S22_L006_R1.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R1_001.fastq.gz 3545686367 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 82b7f51d-b538-4767-ae05-11d9894594c6 ea053998f8a0b265cf3cb12fb049c6c1 {"aliquot_tag": "ALQ_ef68b68", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.RNA-Seq.S22_L006_R2.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R2_001.fastq.gz 3805050664 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 e54968f4-2495-4405-970e-709db0d36a14 c49af4598946a796365dd05375471f7b {"aliquot_tag": "ALQ_ef68b68", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.RNA-Seq.transcriptome.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.transcriptome.gdc_realn.bam 7349539022 BAM transcriptome harmonized CPTAC3 e70d33dc-1c28-4982-a883-f65ceb383e7f b0e03f140e140cd3abba84f682eb70d2 {"aliquot_tag": "ALQ_ef68b68", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.WGS.Nbc C3L-06072 AML WGS buccal_normal CPT0369690002 CPT0369690002.WholeGenome.RP-2158.bam 48083145421 BAM submitted_aligned CPTAC3 02b0ac20-961f-4935-9e53-42175deef4a8 501a0de9f6dcfc06628dca2a58e3acbd {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06072.WGS.Nbc.hg38 C3L-06072 AML WGS buccal_normal CPT0369690002 1adf12e4-ba45-415f-865f-d7974cd71439_wgs_gdc_realn.bam 148315312881 BAM harmonized CPTAC3 343a85c3-aea3-4ca6-88e8-dadeff887a4f 0281d8b03ea5e45526ea40f70f72e4d9 {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06072.WGS.Tpb C3L-06072 AML WGS tumor_peripheral_blood CPT0369720002 CPT0369720002.WholeGenome.RP-2158.bam 44094742886 BAM submitted_aligned CPTAC3 12d512ce-c923-41e7-8fdb-d5865160784a a5de1a0a65d273e58de4b42c94b6d036 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.WGS.Tpb.hg38 C3L-06072 AML WGS tumor_peripheral_blood CPT0369720002 119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wgs_gdc_realn.bam 127936543010 BAM harmonized CPTAC3 d89ac0df-eada-4938-9b40-4ff3515eacdb 7e8f9e6305902612127349a429a969b4 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.WXS.Nbc C3L-06072 AML WXS buccal_normal CPT0369690002 CPT0369690002.WholeExome.RP-1303.bam 17868360061 BAM submitted_aligned CPTAC3 c345bc99-53dc-4348-8e44-f439c2e8662c 9dbfd85bbbf4f2aab175604d66791b13 {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06072.WXS.Nbc.hg38 C3L-06072 AML WXS buccal_normal CPT0369690002 1adf12e4-ba45-415f-865f-d7974cd71439_wxs_gdc_realn.bam 24287119355 BAM harmonized CPTAC3 dedd32c0-3e63-45e0-ad49-7f74153a9cf4 f3f03030800d7f8f69277905136b9a3a {"aliquot_tag": "ALQ_47facf1c", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06072.WXS.Tpb C3L-06072 AML WXS tumor_peripheral_blood CPT0369720002 CPT0369720002.WholeExome.RP-1303.bam 28161962560 BAM submitted_aligned CPTAC3 7e180b43-4504-4b6b-be9b-ff2cd0161603 bbcf589d13f4009e52ca64b18bf83e19 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06072.WXS.Tpb.hg38 C3L-06072 AML WXS tumor_peripheral_blood CPT0369720002 119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wxs_gdc_realn.bam 39063588272 BAM harmonized CPTAC3 8d6dce3c-9f69-461b-83c8-2b752452b7e9 0c43bddcf6024ced980d4ee53fea26b5 {"aliquot_tag": "ALQ_fb762da8", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06073.MethArray.Green.Tbm C3L-06073 AML Methylation_Array tumor_bone_marrow CPT0370690002 205589730156_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0c9edc91-6d3a-4345-9179-1d85b4c11a2b ac6ef59bea60a1cdf24ac275434b108b {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.MethArray.Red.Tbm C3L-06073 AML Methylation_Array tumor_bone_marrow CPT0370690002 205589730156_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 f007e836-4264-4498-85c2-8b708b9534d7 701b79ffd139bce224b44c36a74db019 {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.miRNA-Seq.S19_L007_R1.Tbm C3L-06073 AML miRNA-Seq tumor_bone_marrow CPT0370670002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATGTCA_S19_L007_R1_001.unaln.bam 303050518 BAM S19_L007_R1 submitted_unaligned CPTAC3 b1fbfb30-9556-4f6e-86d9-ea0d536f00ce 314af9b49d4c443ab11015d73b1da4ac {"aliquot_tag": "ALQ_a1f83430", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06073.miRNA-Seq.Tbm.hg38 C3L-06073 AML miRNA-Seq tumor_bone_marrow CPT0370670002 5b95bda9-07f4-4185-985f-3a8ad47e52f9_mirnaseq_gdc_realn.bam 317823474 BAM harmonized CPTAC3 aac09fe7-5154-4c95-ad04-ffc53a178015 4adab3cff5126ec17dbf21363ef973ff {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06073.RNA-Seq.chimeric.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.chimeric.gdc_realn.bam 149127548 BAM chimeric harmonized CPTAC3 8ded26a0-2057-47f9-ad11-27781abcc042 3aaa899061e7ee49c9336ff3648d3178 {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.RNA-Seq.genomic.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.genomic.gdc_realn.bam 8159541327 BAM genomic harmonized CPTAC3 0e006dbd-8126-4768-ae4f-68e477a864ff 0d1d9720b01c8562482a4c37c09fa3dc {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.RNA-Seq.S59_L007_R1.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R1_001.fastq.gz 3936008383 FASTQ S59_L007_R1 submitted_unaligned CPTAC3 2a9f2071-6f43-42f7-8e78-249b76c494bb 0013d998a32202e736c8285e569a3bb8 {"aliquot_tag": "ALQ_a1f83430", "sample": "S59", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06073.RNA-Seq.S59_L007_R2.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R2_001.fastq.gz 4254043495 FASTQ S59_L007_R2 submitted_unaligned CPTAC3 f74e6b9e-cdcf-4669-bf48-e344ed3459c6 eae15dc5faf02596f3f9ab6c70261b6b {"aliquot_tag": "ALQ_a1f83430", "sample": "S59", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06073.RNA-Seq.transcriptome.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.transcriptome.gdc_realn.bam 10506542454 BAM transcriptome harmonized CPTAC3 9a0cd4dc-8f8a-476e-841b-66318862ca14 02243b7187ce562d4d1ddce5fe6fc979 {"aliquot_tag": "ALQ_a1f83430", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.WGS.Tbm C3L-06073 AML WGS tumor_bone_marrow CPT0370690002 CPT0370690002.WholeGenome.RP-2158.bam 46725454089 BAM submitted_aligned CPTAC3 5aee57d2-538f-436f-8298-7c0dc829503a 0b5dc54f6c2a716f8e3c160f04f297d1 {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.WGS.Tbm.hg38 C3L-06073 AML WGS tumor_bone_marrow CPT0370690002 f84701f0-bcab-4379-a4f2-8bfa19021e41_wgs_gdc_realn.bam 131703064864 BAM harmonized CPTAC3 c964a957-b63d-4618-86bd-2a8e90f71c0e 7b126d6b6080b94e1299e5acd39bec8b {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.WXS.Tbm C3L-06073 AML WXS tumor_bone_marrow CPT0370690002 CPT0370690002.WholeExome.RP-1303.bam 26251193354 BAM submitted_aligned CPTAC3 7d0adb08-2199-4486-a573-8d796ca62454 b18f1061a0fdfe93da1615726229091e {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06073.WXS.Tbm.hg38 C3L-06073 AML WXS tumor_bone_marrow CPT0370690002 f84701f0-bcab-4379-a4f2-8bfa19021e41_wxs_gdc_realn.bam 36475108386 BAM harmonized CPTAC3 0997eeba-f60e-4798-a07d-eac375e57f22 596303d71def176602cb9b4691a6ab8c {"aliquot_tag": "ALQ_1ec88a51", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06074.MethArray.Green.Tpb C3L-06074 AML Methylation_Array tumor_peripheral_blood CPT0371170002 205987780161_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ac74f9e7-f536-4592-b32d-26873823a5ec 235c1890f34c638607441953af495cb8 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.MethArray.Red.Tpb C3L-06074 AML Methylation_Array tumor_peripheral_blood CPT0371170002 205987780161_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 7e647122-2a7f-4a9f-9f35-1a930bbb9f9e 3adbe788bd135485270cb2b9abaa5ea6 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.miRNA-Seq.S26_L002_R1.Tpb C3L-06074 AML miRNA-Seq tumor_peripheral_blood CPT0371180002 220125_UNC32-K00270_0311_AHMNYYBBXY_AGTTCC_S26_L002_R1_001.unaln.bam 263702724 BAM S26_L002_R1 submitted_unaligned CPTAC3 1f8d8125-4187-42f7-b0fc-554cae6a7f5c 61de3e81bf892e5d8ffefe03df209b60 {"aliquot_tag": "ALQ_98da98ed", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.miRNA-Seq.Tpb.hg38 C3L-06074 AML miRNA-Seq tumor_peripheral_blood CPT0371180002 38d40788-7809-490e-ad9f-fd87b2851b08_mirnaseq_gdc_realn.bam 284493058 BAM harmonized CPTAC3 fc6ef094-8f18-4ddc-8ac7-b63a8dd1c74c fc374afe91984484a17aeb8fc0d10df7 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.RNA-Seq.chimeric.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.chimeric.gdc_realn.bam 587695400 BAM chimeric harmonized CPTAC3 d405560d-5d67-4133-b083-5d9b2aed759e 94fd597083f25a7675540297512ae470 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.RNA-Seq.genomic.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.genomic.gdc_realn.bam 8801923084 BAM genomic harmonized CPTAC3 d51c77a9-8d6a-4849-baf0-09440f07ef5a 565c5fa8f9dfc889e6872164e9140476 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.RNA-Seq.S5_L002_R1.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4499840671 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 50dd645d-18fe-47a6-9c84-3ab2cc4920cf 3a78a779f7ae6b75cd723ac1d0fd9dd8 {"aliquot_tag": "ALQ_98da98ed", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.RNA-Seq.S5_L002_R2.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4669385308 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 1454570b-74ec-4b94-8d48-7c72d5f8470b 402d46096c60a1e8bbcbb6425fd5c1ff {"aliquot_tag": "ALQ_98da98ed", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.RNA-Seq.transcriptome.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.transcriptome.gdc_realn.bam 9653949922 BAM transcriptome harmonized CPTAC3 674f108b-4f64-453b-bfc8-370fb2e09dca c37c7cf3579b7bfc28ded94a721f3d97 {"aliquot_tag": "ALQ_98da98ed", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.WGS.Nbc C3L-06074 AML WGS buccal_normal CPT0371120002 CPT0371120002.WholeGenome.RP-2158.bam 59291864171 BAM submitted_aligned CPTAC3 3ee87649-29cb-42bc-b8c4-0aab8d99c6bc 1319af1b8f638017cbe239f87e646228 {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06074.WGS.Nbc.hg38 C3L-06074 AML WGS buccal_normal CPT0371120002 af33e386-18b7-4f20-85f9-5bb0131d9b0a_wgs_gdc_realn.bam 170347703859 BAM harmonized CPTAC3 d389e536-718a-4c9c-99c7-8301baa0fd09 020ea8f392e16d92ec11057b695ca72e {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06074.WGS.Tpb C3L-06074 AML WGS tumor_peripheral_blood CPT0371170002 CPT0371170002.WholeGenome.RP-2158.bam 43977145645 BAM submitted_aligned CPTAC3 ffcf686b-8751-4a02-9fe5-d37458f77737 66440d256c7811e162e2823d2bbe426d {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.WGS.Tpb.hg38 C3L-06074 AML WGS tumor_peripheral_blood CPT0371170002 317ae442-efba-4243-814a-09cad953f602_wgs_gdc_realn.bam 367154639935 BAM harmonized CPTAC3 6b02e7e1-703f-44b0-8aa8-f1c52e7788a6 c4f342428b574a110f10c6aacb171dc1 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.WXS.Nbc C3L-06074 AML WXS buccal_normal CPT0371120002 CPT0371120002.WholeExome.RP-1303.bam 25858271266 BAM submitted_aligned CPTAC3 3c40f5be-c066-458c-96e7-5dcd1201c1d4 c7c9e73e6122cd1bbb500be2bfe84d3b {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06074.WXS.Nbc.hg38 C3L-06074 AML WXS buccal_normal CPT0371120002 af33e386-18b7-4f20-85f9-5bb0131d9b0a_wxs_gdc_realn.bam 35245093334 BAM harmonized CPTAC3 1b1616ba-b1fd-4f17-9ce9-97fc0d0c1e0f c573a37f86834719a6e0e08a8ec2be9e {"aliquot_tag": "ALQ_d26a804c", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06074.WXS.Tpb C3L-06074 AML WXS tumor_peripheral_blood CPT0371170002 CPT0371170002.WholeExome.RP-1303.bam 26147566435 BAM submitted_aligned CPTAC3 8d0da758-9956-4da3-a535-8d1a3ad7346a 18ed7e2bfd3628c3f37b384eef339197 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06074.WXS.Tpb.hg38 C3L-06074 AML WXS tumor_peripheral_blood CPT0371170002 317ae442-efba-4243-814a-09cad953f602_wxs_gdc_realn.bam 36343841110 BAM harmonized CPTAC3 8447e47e-4650-46f1-a31e-4caca566ccf8 3eec4cbc4ff8022890e95959b7a69a54 {"aliquot_tag": "ALQ_1a8a0f3c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06075.MethArray.Green.Tbm C3L-06075 AML Methylation_Array tumor_bone_marrow CPT0370450002 205707890143_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3c1a90c2-19c4-4bbf-a8f2-a3fb997a853f 713bc541341d6670128c65bbb31ba6b6 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06075.MethArray.Red.Tbm C3L-06075 AML Methylation_Array tumor_bone_marrow CPT0370450002 205707890143_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 27b90e0b-9bb4-46a6-b6de-453351fa733b b9e32a9341e38601a93653738b3eae59 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06075.miRNA-Seq.S4_L001_R1.Tpb C3L-06075 AML miRNA-Seq tumor_peripheral_blood CPT0370460002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACTCA_S4_L001_R1_001.unaln.bam 297094562 BAM S4_L001_R1 submitted_unaligned CPTAC3 b0ae9641-ed57-4d52-a9cd-964f75e56450 3e67466f4fcd472f86739b25c90fce1d {"aliquot_tag": "ALQ_d150bc8b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06075.miRNA-Seq.Tpb.hg38 C3L-06075 AML miRNA-Seq tumor_peripheral_blood CPT0370460002 73fcd7e7-210d-41cf-9943-6be0ad0726b4_mirnaseq_gdc_realn.bam 322035547 BAM harmonized CPTAC3 c6c502bd-6ee4-4bd7-8f57-2e27136ba3b2 06a96fc5e4a40b3c9ce4a7c41fcace08 {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06075.RNA-Seq.chimeric.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.chimeric.gdc_realn.bam 586713132 BAM chimeric harmonized CPTAC3 95a2b995-2c8a-405d-91f4-43cddc4b9ab9 132b7065a37a27591060341a45f61adf {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06075.RNA-Seq.genomic.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.genomic.gdc_realn.bam 9264501711 BAM genomic harmonized CPTAC3 2e051787-6872-4fd0-ae1e-2972a73383fe 91c3401c9d9069a87b3ee190d7c2ab23 {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06075.RNA-Seq.S4_L001_R1.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R1_001.fastq.gz 4001226423 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 4d51a2e7-9fda-4770-a77b-c59c840ed0b6 be054814eed9be9d53ccf2288f3c9865 {"aliquot_tag": "ALQ_d150bc8b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06075.RNA-Seq.S4_L001_R2.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R2_001.fastq.gz 4288087488 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 542b3afd-7589-453f-bc59-771b68fe1c25 374390675aedfd2379aad981f0d1b400 {"aliquot_tag": "ALQ_d150bc8b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06075.RNA-Seq.transcriptome.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.transcriptome.gdc_realn.bam 7491172320 BAM transcriptome harmonized CPTAC3 f69cc1a8-b9a6-477e-b66e-d2bbac34118a de89738e81bf830ea3d293b4e635a7f0 {"aliquot_tag": "ALQ_d150bc8b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06075.WGS.Nbc C3L-06075 AML WGS buccal_normal CPT0370400002 CPT0370400002.WholeGenome.RP-2158.bam 61394930570 BAM submitted_aligned CPTAC3 ad6cd4fb-c629-4fb0-a657-91c4034b2286 b794b06473a26143a1e86f0c21df169d {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06075.WGS.Nbc.hg38 C3L-06075 AML WGS buccal_normal CPT0370400002 7ff77494-ebab-43b5-b756-6acd97a90b78_wgs_gdc_realn.bam 203620540701 BAM harmonized CPTAC3 47e8d381-d52d-4117-b450-ab265a010af9 f8b06f18f00a5c85b8782398735a8150 {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06075.WGS.Tbm C3L-06075 AML WGS tumor_bone_marrow CPT0370450002 CPT0370450002.WholeGenome.RP-2158.bam 56099819021 BAM submitted_aligned CPTAC3 7d9db5a1-c0db-43d7-96e6-03bbcf6d7837 9527d63392254fbce214020302a1af6e {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06075.WGS.Tbm.hg38 C3L-06075 AML WGS tumor_bone_marrow CPT0370450002 3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wgs_gdc_realn.bam 166584458143 BAM harmonized CPTAC3 17f35cdd-9827-40b2-9f27-f7ff88dbfed0 2fe0a7af7e50cae2f1b340c123f3a867 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06075.WXS.Nbc C3L-06075 AML WXS buccal_normal CPT0370400002 CPT0370400002.WholeExome.RP-1303.bam 29404791979 BAM submitted_aligned CPTAC3 ff2a36cf-25f1-4f2b-9fcc-25e3bd686e20 a8fcbc2b58a7def5267e4216df275da6 {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06075.WXS.Nbc.hg38 C3L-06075 AML WXS buccal_normal CPT0370400002 7ff77494-ebab-43b5-b756-6acd97a90b78_wxs_gdc_realn.bam 40422279314 BAM harmonized CPTAC3 6ce214e7-d2a0-407a-9207-88a0bd2e49a6 e92b69a7d2482e7533d750d77b0bc18b {"aliquot_tag": "ALQ_5e10492b", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06075.WXS.Tbm C3L-06075 AML WXS tumor_bone_marrow CPT0370450002 CPT0370450002.WholeExome.RP-1303.bam 27567774244 BAM submitted_aligned CPTAC3 612671e0-5738-4fe1-a287-41748647821f 4c068d07f0a9b2c4279969519b005055 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06075.WXS.Tbm.hg38 C3L-06075 AML WXS tumor_bone_marrow CPT0370450002 3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wxs_gdc_realn.bam 38474016924 BAM harmonized CPTAC3 72f599d1-d66b-4db4-bbd6-3cc94517884f 4cdeba3b8a2bd967b9a9fca5293b9f49 {"aliquot_tag": "ALQ_96f0c65b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06081.MethArray.Green.Tbm C3L-06081 AML Methylation_Array tumor_bone_marrow CPT0452610002 205987780161_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a445e029-6ce7-46b5-9f00-a7ed9dcdc441 7410ffbfb43892bfaf766675b6ca0954 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.MethArray.Red.Tbm C3L-06081 AML Methylation_Array tumor_bone_marrow CPT0452610002 205987780161_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 33840893-ed3b-400f-af99-e9426706ab6a 1ddd54f17a286aabc8f50e654c685b27 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.miRNA-Seq.S20_L003_R1.Tbm C3L-06081 AML miRNA-Seq tumor_bone_marrow CPT0452620002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGAAG_S20_L003_R1_001.unaln.bam 184198755 BAM S20_L003_R1 submitted_unaligned CPTAC3 5ce1b12c-d601-4a66-95ac-d93757290b03 c46a1cdf50baae1647d90c43dcf0c25c {"aliquot_tag": "ALQ_d8c3c0dd", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.miRNA-Seq.Tbm.hg38 C3L-06081 AML miRNA-Seq tumor_bone_marrow CPT0452620002 19b823fa-2808-4437-ba58-fd7062f10da8_mirnaseq_gdc_realn.bam 210900142 BAM harmonized CPTAC3 46965013-7c4d-46b7-8e17-73c4dfb634f3 78b57e931555520938a1d42cfa7d9195 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.RNA-Seq.chimeric.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.chimeric.gdc_realn.bam 430690606 BAM chimeric harmonized CPTAC3 5c8d1922-1a0f-475e-9af0-89f50d382864 4fbc44ac43dffde6393fa55befbc74c1 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.RNA-Seq.genomic.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.genomic.gdc_realn.bam 9169586737 BAM genomic harmonized CPTAC3 3d5e524a-6724-4aec-99d6-6f86cb1801ae 7be4881f3ec89aa8a2a3c06b9dd4b104 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.RNA-Seq.S5_L002_R1.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R1_001.fastq.gz 4524484967 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 27d6ab0a-cbb7-40b9-af9e-a3e7a407b8a7 93468f10f4b484a5d0d6845a939fce8e {"aliquot_tag": "ALQ_d8c3c0dd", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.RNA-Seq.S5_L002_R2.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R2_001.fastq.gz 5017312104 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 8f431e06-a2ed-411c-834b-ac6573ec6994 59788e71abe1bdbf316d637c191492e5 {"aliquot_tag": "ALQ_d8c3c0dd", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.RNA-Seq.transcriptome.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.transcriptome.gdc_realn.bam 10236591159 BAM transcriptome harmonized CPTAC3 b12ea9f1-e1e8-4393-9c8c-0073745a8d53 de92789e9f140e3373e342d0768bfe42 {"aliquot_tag": "ALQ_d8c3c0dd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.WGS.Nbc C3L-06081 AML WGS buccal_normal CPT0452580002 CPT0452580002.WholeGenome.RP-2158.bam 40855679386 BAM submitted_aligned CPTAC3 e9f5e03e-f8e3-464b-81a8-bb6e9f88f101 f59059b8b17803c6ec1525deea9a4bc6 {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06081.WGS.Nbc.hg38 C3L-06081 AML WGS buccal_normal CPT0452580002 514223c1-3f15-441e-b150-c3ac379276de_wgs_gdc_realn.bam 135193769846 BAM harmonized CPTAC3 c1b6ce2c-5f95-4401-aacf-ba91ba168ea4 beb10e17a44a0cd92a28e72ae78b0a31 {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06081.WGS.Tbm C3L-06081 AML WGS tumor_bone_marrow CPT0452610002 CPT0452610002.WholeGenome.RP-2158.bam 57212987809 BAM submitted_aligned CPTAC3 7d8be4b7-e3e2-4bd2-8d7c-a98b9c008459 65e1a32d11b73b62236cbda79f548314 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.WGS.Tbm.hg38 C3L-06081 AML WGS tumor_bone_marrow CPT0452610002 f5223369-0629-49fe-8d6c-168633407e79_wgs_gdc_realn.bam 172146341176 BAM harmonized CPTAC3 8a5d9822-2aac-41de-a04c-3bfcc975bd20 3e1a568d56ee314d9bc9974310fcce89 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.WXS.Nbc C3L-06081 AML WXS buccal_normal CPT0452580002 CPT0452580002.WholeExome.RP-1303.bam 28932454464 BAM submitted_aligned CPTAC3 387b4650-d0a7-4ede-a82f-1f43efc58048 5142c1257260f8b8b3fc6e0980d99040 {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06081.WXS.Nbc.hg38 C3L-06081 AML WXS buccal_normal CPT0452580002 514223c1-3f15-441e-b150-c3ac379276de_wxs_gdc_realn.bam 40169047067 BAM harmonized CPTAC3 73f5f03d-516a-46ca-afad-3e1cc385cf4d 34d171051f1ca40d91b0a489d9d6b5ec {"aliquot_tag": "ALQ_14e7aad2", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06081.WXS.Tbm C3L-06081 AML WXS tumor_bone_marrow CPT0452610002 CPT0452610002.WholeExome.RP-1303.bam 28667945964 BAM submitted_aligned CPTAC3 0a3c2aaa-b04d-49d1-8f65-77c0e96be3e1 a1278e8d358b3409cdd9b018e6295304 {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06081.WXS.Tbm.hg38 C3L-06081 AML WXS tumor_bone_marrow CPT0452610002 f5223369-0629-49fe-8d6c-168633407e79_wxs_gdc_realn.bam 39570188846 BAM harmonized CPTAC3 3b620621-8e5f-4c2b-a1bf-700aab00eba9 93b7307fd83c08792d33c84c865c166c {"aliquot_tag": "ALQ_9f63ba0d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06082.MethArray.Green.Tbm C3L-06082 AML Methylation_Array tumor_bone_marrow CPT0369940002 205707890036_R08C01_Grn.idat 13677894 IDAT Green NA CPTAC3 b82bcfb5-3345-4510-b91d-d34bba6660b6 76774446993371f9ad8f3b93510b9ddb {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06082.MethArray.Red.Tbm C3L-06082 AML Methylation_Array tumor_bone_marrow CPT0369940002 205707890036_R08C01_Red.idat 13677894 IDAT Red NA CPTAC3 9f69da76-7242-4baf-a539-6ef10b0282fd efb482350258cfff3ce9a6d778f37f88 {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06082.miRNA-Seq.S28_L003_R1.Tpb C3L-06082 AML miRNA-Seq tumor_peripheral_blood CPT0369980002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAACTA_S28_L003_R1_001.unaln.bam 221096532 BAM S28_L003_R1 submitted_unaligned CPTAC3 86afc279-e464-42cf-8af0-e07015cd55e4 13a7e01b09b010d5801cb343a88e4c58 {"aliquot_tag": "ALQ_8bcc5479", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06082.miRNA-Seq.Tpb.hg38 C3L-06082 AML miRNA-Seq tumor_peripheral_blood CPT0369980002 1d6aa9ec-fe58-41cc-8803-0452e10cf859_mirnaseq_gdc_realn.bam 245476341 BAM harmonized CPTAC3 3edfc932-3030-447f-9b94-252241f3760c 19e38b90a95d7678e64085c05d44ee92 {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06082.RNA-Seq.chimeric.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.chimeric.gdc_realn.bam 690357928 BAM chimeric harmonized CPTAC3 4760c21d-d6b7-4629-a4bf-8cd37e7053e5 77cff9a48af9756e08043858350d1e5a {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06082.RNA-Seq.genomic.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.genomic.gdc_realn.bam 8207921033 BAM genomic harmonized CPTAC3 27b69363-710f-457d-ac2e-195f49983ffb 1f3f728e121794f82742451633dd4ab9 {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06082.RNA-Seq.S24_L006_R1.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R1_001.fastq.gz 4151955597 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 5de83077-6e32-4796-90d6-7742845fbd32 e1d19f47152a2e3888dce9eeda2e7618 {"aliquot_tag": "ALQ_8bcc5479", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06082.RNA-Seq.S24_L006_R2.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R2_001.fastq.gz 4441579884 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 3ed174f8-22b4-4d16-a3f7-82447ac3d34a 0c7bf216f683ac883fdf4e09d4e01cbc {"aliquot_tag": "ALQ_8bcc5479", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06082.RNA-Seq.transcriptome.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.transcriptome.gdc_realn.bam 8841829918 BAM transcriptome harmonized CPTAC3 17a78e32-a204-44e8-83fa-cbbc47490d9d 1f04e003673da3c777e1957bd5700d8b {"aliquot_tag": "ALQ_8bcc5479", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06082.WGS.Tbm C3L-06082 AML WGS tumor_bone_marrow CPT0369940002 CPT0369940002.WholeGenome.RP-2158.bam 50309371790 BAM submitted_aligned CPTAC3 99a1ada9-9d09-4a04-8fec-da11a4c3849a 75ac7c3f88027874546acf76b1f2ab8c {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06082.WGS.Tbm.hg38 C3L-06082 AML WGS tumor_bone_marrow CPT0369940002 76ef3c77-d9e5-4081-afdf-5079589663c7_wgs_gdc_realn.bam 144827805041 BAM harmonized CPTAC3 0bda7b7d-df27-48de-a0fc-755399dea180 7c8476db0bd85cfbe3cd551da7d658c4 {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06082.WXS.Nbc C3L-06082 AML WXS buccal_normal CPT0369910002 CPT0369910002.WholeExome.RP-1303.bam 25926319973 BAM submitted_aligned CPTAC3 0cb730aa-7ef5-4b7e-9200-312da0320bfb 97583fc7a9dad0dbfcce9203ee77b89e {"aliquot_tag": "ALQ_86dc3608", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06082.WXS.Nbc.hg38 C3L-06082 AML WXS buccal_normal CPT0369910002 f6184d62-7c6f-49a7-a375-574fcd8faa62_wxs_gdc_realn.bam 35355218737 BAM harmonized CPTAC3 ed1760b8-da9b-4a5a-9433-9d010236f046 d08836f5581135bd5e1fb7f3e1f18fd2 {"aliquot_tag": "ALQ_86dc3608", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06082.WXS.Tbm C3L-06082 AML WXS tumor_bone_marrow CPT0369940002 CPT0369940002.WholeExome.RP-1303.bam 28208513663 BAM submitted_aligned CPTAC3 61c462e2-d093-42b3-aa1c-32fd72730c72 bff3e437dac6e99ede4f0c9d0f7c2084 {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06082.WXS.Tbm.hg38 C3L-06082 AML WXS tumor_bone_marrow CPT0369940002 76ef3c77-d9e5-4081-afdf-5079589663c7_wxs_gdc_realn.bam 39154540027 BAM harmonized CPTAC3 69e375cb-f7a4-48b3-b428-ae1b3b6bd512 6a89c49c62824211b04e51514328a09d {"aliquot_tag": "ALQ_4e3cb978", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06087.MethArray.Green.Tpb C3L-06087 AML Methylation_Array tumor_peripheral_blood CPT0356660002 205987770157_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b8b9dda3-3b0c-4437-bd91-acb7b173a9e0 4cb08665238fb4dcbf4d4f15971882b4 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.MethArray.Red.Tpb C3L-06087 AML Methylation_Array tumor_peripheral_blood CPT0356660002 205987770157_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 73c7d260-67fc-48d5-9bfb-6aa9e5f746cf 1e8c92551fa50b8bc8d1baef1008d799 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.miRNA-Seq.S36_L002_R1.Tpb C3L-06087 AML miRNA-Seq tumor_peripheral_blood CPT0356680002 220125_UNC32-K00270_0311_AHMNYYBBXY_GGCTAC_S36_L002_R1_001.unaln.bam 282481513 BAM S36_L002_R1 submitted_unaligned CPTAC3 1ffbe8d1-4921-4503-aa66-99174a4babcb 3c5dde5592c1567f047159876e2c6f98 {"aliquot_tag": "ALQ_25d91a6", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.miRNA-Seq.Tpb.hg38 C3L-06087 AML miRNA-Seq tumor_peripheral_blood CPT0356680002 381410a6-880a-49d5-80cf-f747b64b6178_mirnaseq_gdc_realn.bam 310821732 BAM harmonized CPTAC3 6baedf2d-2d6d-4540-9559-ba9c681070b2 adf5ba8378cc8fc975a37c490f8adb8c {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.RNA-Seq.chimeric.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.chimeric.gdc_realn.bam 635846234 BAM chimeric harmonized CPTAC3 77b30bb3-065e-423b-8601-ccd607ba431c 26c6b5ae3e51053fad7928c395e9ab7f {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.RNA-Seq.genomic.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.genomic.gdc_realn.bam 7351405463 BAM genomic harmonized CPTAC3 3947512f-2fee-47d8-8cde-26b732b03290 665c7d33adb013070948222d8bce3bfd {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.RNA-Seq.S6_L002_R1.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3677062427 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 2759438e-13fb-4a68-8f93-de762a312def 1842c9ac135f66ddfe6dd18e19bcc075 {"aliquot_tag": "ALQ_25d91a6", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.RNA-Seq.S6_L002_R2.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3865925400 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 7e2cbc0b-182d-45ba-873e-ef9ce51ced6b 905023f80dac9db3c861fac5cfc8c478 {"aliquot_tag": "ALQ_25d91a6", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.RNA-Seq.transcriptome.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.transcriptome.gdc_realn.bam 7223673189 BAM transcriptome harmonized CPTAC3 82345891-41c2-455e-838e-a2275397d2f1 aec6ac3105386e0e8f67d166d8af8a7a {"aliquot_tag": "ALQ_25d91a6", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.WGS.Nbc C3L-06087 AML WGS buccal_normal CPT0356700002 CPT0356700002.WholeGenome.RP-2158.bam 50270177971 BAM submitted_aligned CPTAC3 7533aec2-9c1f-428a-b75d-5a84a7cfa118 96491a96fc590701bfe07e9118553d15 {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06087.WGS.Nbc.hg38 C3L-06087 AML WGS buccal_normal CPT0356700002 579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wgs_gdc_realn.bam 144507062127 BAM harmonized CPTAC3 76fbce3e-9d03-4812-af81-48f4ece89e38 2dea2736e471629221c9115dd7697a7a {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06087.WGS.Tpb C3L-06087 AML WGS tumor_peripheral_blood CPT0356660002 CPT0356660002.WholeGenome.RP-2158.bam 46092867108 BAM submitted_aligned CPTAC3 38095b28-4be7-42d5-8ef5-cf5cddcec09b a689b00484d90360990a7a3e8e0d402c {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.WGS.Tpb.hg38 C3L-06087 AML WGS tumor_peripheral_blood CPT0356660002 bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wgs_gdc_realn.bam 135893960716 BAM harmonized CPTAC3 da1742db-aaf8-4617-a695-fea2359a0c0b 115178bdb9822b39b6b234cd6243d97e {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.WXS.Nbc C3L-06087 AML WXS buccal_normal CPT0356700002 CPT0356700002.WholeExome.RP-1303.bam 24355469682 BAM submitted_aligned CPTAC3 bd01e3d6-a5e0-460f-ae39-36f3e2c50162 9d23d63796b6ff87e0ec9a04d316ac5a {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06087.WXS.Nbc.hg38 C3L-06087 AML WXS buccal_normal CPT0356700002 579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wxs_gdc_realn.bam 33053744588 BAM harmonized CPTAC3 45604952-1385-4e46-b462-998b6208de8a 5f7a36c23498eaa5d9cbdd394276151c {"aliquot_tag": "ALQ_f97109c2", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06087.WXS.Tpb C3L-06087 AML WXS tumor_peripheral_blood CPT0356660002 CPT0356660002.WholeExome.RP-1303.bam 21862331049 BAM submitted_aligned CPTAC3 69c4d610-5bee-4387-bb4e-6b1d43942393 15b66325994ccbe7134822f2b3335b94 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06087.WXS.Tpb.hg38 C3L-06087 AML WXS tumor_peripheral_blood CPT0356660002 bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wxs_gdc_realn.bam 30153143018 BAM harmonized CPTAC3 e076dabd-9af6-4cd2-81cf-948c8212f335 282be9689415c28877ed826ac1cb81f3 {"aliquot_tag": "ALQ_bd6d2fc7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06089.MethArray.Green.Tpb C3L-06089 AML Methylation_Array tumor_peripheral_blood CPT0356520002 205987770157_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 125345e9-608a-4efa-a0c8-dfc342530d5f 37680c62f8965f8bb35f6f8fbb6b70e7 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.MethArray.Red.Tpb C3L-06089 AML Methylation_Array tumor_peripheral_blood CPT0356520002 205987770157_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 d32d96b3-ecaf-4c9c-b6f9-87e8d9e2d3bd 559b335ce9228794123312d473f3838d {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.miRNA-Seq.S13_L001_R1.Tpb C3L-06089 AML miRNA-Seq tumor_peripheral_blood CPT0356510002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L001_R1_001.unaln.bam 288610667 BAM S13_L001_R1 submitted_unaligned CPTAC3 1d900a25-c657-422a-b043-10f9b3008738 02eb1ffacce75b1f04bd910ed967accc {"aliquot_tag": "ALQ_89d98179", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.miRNA-Seq.Tpb.hg38 C3L-06089 AML miRNA-Seq tumor_peripheral_blood CPT0356510002 fb811d85-7701-44e3-80a2-7f45fc7260ee_mirnaseq_gdc_realn.bam 319030624 BAM harmonized CPTAC3 d3b71090-2df3-4c35-adcc-e10a5136a034 c3b1a9b84c2e15c2b91ff7ab133acf9c {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.RNA-Seq.chimeric.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.chimeric.gdc_realn.bam 599505590 BAM chimeric harmonized CPTAC3 b9045acd-3a04-466b-86ce-38f66e15b66d ef8d2deb7486e83cff25289024723b7a {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.RNA-Seq.genomic.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.genomic.gdc_realn.bam 8215952364 BAM genomic harmonized CPTAC3 a8591116-5067-45f8-8055-17cac5fa76c8 bebbc9ed0bf77ef653d5ad159f8e5bbf {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.RNA-Seq.S19_L005_R1.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R1_001.fastq.gz 4099782324 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 b712df6d-c392-46bf-8466-ce7af45d8b74 8f15ea9bedc63b2ff1fe6d7b932508bf {"aliquot_tag": "ALQ_89d98179", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.RNA-Seq.S19_L005_R2.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R2_001.fastq.gz 4372659822 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 8279bbfd-fc68-4b8e-96d6-a830a752527b d136f38f36eea2b6fd9a1197452fd30b {"aliquot_tag": "ALQ_89d98179", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.RNA-Seq.transcriptome.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.transcriptome.gdc_realn.bam 12177283992 BAM transcriptome harmonized CPTAC3 331f3250-5b8e-49c7-b904-9a15eb676a80 55a827defa07de010589cc9b9127711d {"aliquot_tag": "ALQ_89d98179", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.WGS.Nbc C3L-06089 AML WGS buccal_normal CPT0356590003 CPT0356590003.WholeGenome.RP-2158.bam 46112083784 BAM submitted_aligned CPTAC3 059ba062-84e6-4b72-a806-2b39e6fe4714 2ad8dd8fcac053c9864439a5494a2724 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06089.WGS.Nbc.hg38 C3L-06089 AML WGS buccal_normal CPT0356590003 f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wgs_gdc_realn.bam 133693382041 BAM harmonized CPTAC3 08e06a2b-fa98-47c2-8e5d-8a17196c3211 385ebbf96b099eb301f9e45aa1dbb906 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06089.WGS.Tpb C3L-06089 AML WGS tumor_peripheral_blood CPT0356520002 CPT0356520002.WholeGenome.RP-2158.bam 43844001775 BAM submitted_aligned CPTAC3 2109b132-2eee-4d22-9a08-3e3f7ddfa23b 6f3d3edc48d24466ac7a34816a04e2e9 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.WGS.Tpb.hg38 C3L-06089 AML WGS tumor_peripheral_blood CPT0356520002 2f1ed585-fbde-4e6c-ab04-622098a497f1_wgs_gdc_realn.bam 128549005080 BAM harmonized CPTAC3 37b73a94-d717-4fad-b01b-6f184d89e923 9434efc5c9ae3e37b78c411d69c5e08b {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.WXS.Nbc C3L-06089 AML WXS buccal_normal CPT0356590003 CPT0356590003.WholeExome.RP-1303.bam 27844450157 BAM submitted_aligned CPTAC3 97728e19-c8d4-4569-8d20-de6bcd58defe ac85dd76c874ebe2ac96e53117b96460 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06089.WXS.Nbc.hg38 C3L-06089 AML WXS buccal_normal CPT0356590003 f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wxs_gdc_realn.bam 37751006036 BAM harmonized CPTAC3 649cedd6-dca5-483a-a82b-5388be642838 8b04514b70104f2138504600bc663ce5 {"aliquot_tag": "ALQ_ceaefa2e", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06089.WXS.Tpb C3L-06089 AML WXS tumor_peripheral_blood CPT0356520002 CPT0356520002.WholeExome.RP-1303.bam 29490911091 BAM submitted_aligned CPTAC3 dff5bb4e-b7dc-4f75-aa8f-ce20176e4b82 577adb528d634aadcc438504dd56a880 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06089.WXS.Tpb.hg38 C3L-06089 AML WXS tumor_peripheral_blood CPT0356520002 2f1ed585-fbde-4e6c-ab04-622098a497f1_wxs_gdc_realn.bam 41009935022 BAM harmonized CPTAC3 0a9ebaa5-b7d2-4194-9574-334e4670fa24 eb4fb3af6673f0003f21a746a313a367 {"aliquot_tag": "ALQ_ce79fba9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06090.MethArray.Green.Tpb C3L-06090 AML Methylation_Array tumor_peripheral_blood CPT0356900002 205707890036_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 4c1037d0-76b9-4120-8004-3cec3de72f19 13a83dcb8f786f1ac9479b00f3e07097 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.MethArray.Red.Tpb C3L-06090 AML Methylation_Array tumor_peripheral_blood CPT0356900002 205707890036_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 278d3f6b-b42b-4c39-a262-10b82fde2796 fa1d9e07005f2c778328c26d7d248a72 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.miRNA-Seq.S14_L001_R1.Tpb C3L-06090 AML miRNA-Seq tumor_peripheral_blood CPT0356930002 220125_UNC32-K00270_0311_AHMNYYBBXY_GACGAC_S14_L001_R1_001.unaln.bam 326420322 BAM S14_L001_R1 submitted_unaligned CPTAC3 289adb3d-f77c-4b75-af9e-ea8350a2b2b5 ecbe113dda345b750c1fde90c1721818 {"aliquot_tag": "ALQ_84db1262", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.miRNA-Seq.Tpb.hg38 C3L-06090 AML miRNA-Seq tumor_peripheral_blood CPT0356930002 192f98b7-fc07-4d9a-a14e-3e16355e4077_mirnaseq_gdc_realn.bam 361230965 BAM harmonized CPTAC3 18e4e810-a344-4cdc-825d-74c474d43684 0dbb79c997c825e181eff2bac75a4207 {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.RNA-Seq.chimeric.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.chimeric.gdc_realn.bam 535273210 BAM chimeric harmonized CPTAC3 76b39184-96d7-4e31-a21c-2684ad5a7e46 1cc960646454c595526d29ca4b676318 {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.RNA-Seq.genomic.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.genomic.gdc_realn.bam 7815513794 BAM genomic harmonized CPTAC3 1ddbfb9a-50eb-4e36-981f-5a530fb79bbf 1cddecf85a252a6e589503025f0ff8ce {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.RNA-Seq.S20_L005_R1.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R1_001.fastq.gz 3863859446 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 aced9574-d984-40e2-ad49-44cb32111bb8 c24fb4ac5c0c287a4e14d3cc74544b01 {"aliquot_tag": "ALQ_84db1262", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.RNA-Seq.S20_L005_R2.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R2_001.fastq.gz 4193155097 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 8a865415-1cd7-45e3-8b19-187d4a706914 8cb5460bcb0670fc4c4a98154d950a7e {"aliquot_tag": "ALQ_84db1262", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.RNA-Seq.transcriptome.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.transcriptome.gdc_realn.bam 10863648268 BAM transcriptome harmonized CPTAC3 972dd758-7065-4932-bdfb-6eecf0e43155 2eb1adabbb53b583ddd81c4735a1cfdf {"aliquot_tag": "ALQ_84db1262", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.WGS.Nbc C3L-06090 AML WGS buccal_normal CPT0356940003 CPT0356940003.WholeGenome.RP-2158.bam 43563326934 BAM submitted_aligned CPTAC3 1de5500b-e758-4a7d-8d7b-c55217754da0 5c02cb8490afcd3ea726ddacc1e29e85 {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06090.WGS.Nbc.hg38 C3L-06090 AML WGS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wgs_gdc_realn.bam 135844710501 BAM harmonized CPTAC3 a722364a-e5e2-4e48-b998-36ebf73181a1 697b0d275b1d605d0f201691a8fc9379 {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06090.WGS.Tpb C3L-06090 AML WGS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeGenome.RP-2158.bam 48011253955 BAM submitted_aligned CPTAC3 3757ffe8-d303-4046-8e19-8f85ec04be18 c33a610030846eb9a99a50dc390fa885 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.WGS.Tpb.hg38 C3L-06090 AML WGS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wgs_gdc_realn.bam 136604782264 BAM harmonized CPTAC3 0f011ecf-0b85-490f-9a3d-cc1a4ba0879a dae84c27eb9c8f3e3680b5b58b5ebee0 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.WXS.Nbc C3L-06090 AML WXS buccal_normal CPT0356940003 CPT0356940003.WholeExome.RP-1303.bam 21293796280 BAM submitted_aligned CPTAC3 e46b4eda-af18-47fd-9f40-2de6cdecb47e 62a9d9c8c37a6a7010e1b17e0ab19378 {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06090.WXS.Nbc.hg38 C3L-06090 AML WXS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wxs_gdc_realn.bam 28827956277 BAM harmonized CPTAC3 71ab0872-716e-451f-8bcb-46b1805592cf 69fb1e4720cdf5fddca3ed59459730fb {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06090.WXS.Tpb C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeExome.RP-1303.bam 22241932064 BAM submitted_aligned CPTAC3 9cb34e01-5744-40fd-89eb-b5fa99edc1cc e6cbec164fd2728e06fc9e49b4e4ac43 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06090.WXS.Tpb.hg38 C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wxs_gdc_realn.bam 30681620462 BAM harmonized CPTAC3 b39ab4d3-f21e-41b3-b0fc-5dd40fccfbaf 68c7f68b14d18aeee53c7fd872a5cc48 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06166.RNA-Seq.chimeric.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.chimeric.gdc_realn.bam 88861301 BAM chimeric harmonized CPTAC3 c54cd277-680a-4d3e-9c42-1dd8e75693d6 da326df8209c8b5b6acc373370b2134a {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06166.RNA-Seq.genomic.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.genomic.gdc_realn.bam 5519855623 BAM genomic harmonized CPTAC3 e508fdcd-20bd-439c-b659-e469956ddf50 dc428186305cb0ccbfa22eb0b55a9c69 {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06166.RNA-Seq.S37_R1.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R1_001.fastq.gz 3427273897 FASTQ S37_R1 submitted_unaligned CPTAC3 e4b7dcf5-c1c6-4e10-b6ab-89137e4be289 94fb955ed112911b77c7218cffdd52a1 {"aliquot_tag": "ALQ_b3016e19", "sample": "S37", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06166.RNA-Seq.S37_R2.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R2_001.fastq.gz 3526630052 FASTQ S37_R2 submitted_unaligned CPTAC3 3e4d4f96-d06f-4f46-9a9c-db812695fad7 219f16bf9a2dc8ef4f2a1f297dc7eaf4 {"aliquot_tag": "ALQ_b3016e19", "sample": "S37", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06166.RNA-Seq.transcriptome.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.transcriptome.gdc_realn.bam 4204271211 BAM transcriptome harmonized CPTAC3 f23ad4fd-42cd-48b3-b542-b1e2644c4965 0121f88d09d447efc02afdb585e5d920 {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.MethArray.Green.A C3L-06169 LSCC Methylation_Array tissue_normal CPT0294650006 204372030013_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 cb284767-1b7b-4954-909a-33cc49801f0f 492be39d2d4d51139311adabee644d3d {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.MethArray.Green.T C3L-06169 LSCC Methylation_Array tumor CPT0294630006 204367490048_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 ce261e4a-0e6d-4b60-b19b-0eb5dcfc81c9 ae4a6f673d95da0978b4444b586c7b3c {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.MethArray.Red.A C3L-06169 LSCC Methylation_Array tissue_normal CPT0294650006 204372030013_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 3f30c251-ec13-4dd6-9379-959af7b85c02 fb9287134e52dad0fef0b12f9ab4d0f8 {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.MethArray.Red.T C3L-06169 LSCC Methylation_Array tumor CPT0294630006 204367490048_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 330515f4-be5f-4a94-9768-3972ad3213b3 cda6607809b3c0f55043b629f4affe46 {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.miRNA-Seq.A.hg38 C3L-06169 LSCC miRNA-Seq tissue_normal CPT0294650009 6f3caa02-68a0-46fa-b092-63e1efa39cfd_mirnaseq_gdc_realn.bam 277006476 BAM harmonized CPTAC3 de7f6291-7086-41c7-b85d-092b04531350 2197ba6ed4b843bf4b9d7ef9bd538558 {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.miRNA-Seq.S20_L001_R1.T C3L-06169 LSCC miRNA-Seq tumor CPT0294630009 200325_UNC31-K00269_0272_AHHC2NBBXY_TATAAT_S20_L001_R1_001.unaln.bam 258167066 BAM S20_L001_R1 submitted_unaligned CPTAC3 41cb2a44-5f2b-4713-839a-538f9fb13edd e911944b48600476ee6ac8c117f70cd4 {"aliquot_tag": "ALQ_3514691a", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.miRNA-Seq.S38_L006_R1.A C3L-06169 LSCC miRNA-Seq tissue_normal CPT0294650009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTAGCT_S38_L006_R1_001.unaln.bam 247746163 BAM S38_L006_R1 submitted_unaligned CPTAC3 ea07f382-5934-43be-be73-f016b9d1ba4a 10e159f22043a9e8a129137b3274ed48 {"aliquot_tag": "ALQ_ba549cba", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.miRNA-Seq.T.hg38 C3L-06169 LSCC miRNA-Seq tumor CPT0294630009 429aefb3-fd55-4ebb-a462-0d4d61286a99_mirnaseq_gdc_realn.bam 279778633 BAM harmonized CPTAC3 c14c93c1-586e-4624-b9c7-b419f6ee6f18 89c5f621a23005ee6a050d8599824f96 {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.RNA-Seq.chimeric.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.chimeric.gdc_realn.bam 26431436 BAM chimeric harmonized CPTAC3 81fe3322-f9c5-425e-bcbe-2f411a91884f e9aed741935f32ad6c1dacdd6b74eba0 {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.RNA-Seq.chimeric.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.chimeric.gdc_realn.bam 56269662 BAM chimeric harmonized CPTAC3 4953ec8d-9bfb-4844-aa79-822b3f476720 1291b1783d944119aaab879dd05073ae {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.RNA-Seq.genomic.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.genomic.gdc_realn.bam 7964382498 BAM genomic harmonized CPTAC3 85938f36-3a34-405f-bf99-0bdcfd95f331 08e748b6283995a667047519717e8ca5 {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.RNA-Seq.genomic.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.genomic.gdc_realn.bam 7867809789 BAM genomic harmonized CPTAC3 7203d337-4936-4fcf-ad01-5fd4e29e396a 8d9f3bd936a2601caabdfa7b4308bf30 {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.RNA-Seq.S22_L006_R1.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R1_001.fastq.gz 3521793454 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 36bc82c5-ec55-4d82-8120-70629a8fe622 7a96b35fe2d4d6181893618fea2540cf {"aliquot_tag": "ALQ_ba549cba", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.RNA-Seq.S22_L006_R2.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R2_001.fastq.gz 4304341065 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 3daa5c88-e40a-4e3c-83e5-612807b983de 70d28c836ef7ca20d870d8bb1bbe30d2 {"aliquot_tag": "ALQ_ba549cba", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.RNA-Seq.S28_L007_R1.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R1_001.fastq.gz 3992470249 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 3d44ddb4-1b20-43c1-9b8c-1edf4e3b2df3 c4f33ff0128fac25ccb1455d16f7cbb0 {"aliquot_tag": "ALQ_3514691a", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.RNA-Seq.S28_L007_R2.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R2_001.fastq.gz 4076167287 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 1450f737-61b9-4fae-a7b5-9139ab891db3 c59dc3eb56ba5487b456fade104cb452 {"aliquot_tag": "ALQ_3514691a", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.RNA-Seq.transcriptome.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.transcriptome.gdc_realn.bam 8843694211 BAM transcriptome harmonized CPTAC3 38f12b4e-bc69-44de-901e-09e566a61f73 aa6f48dc94323e32e195b14416e5d7ac {"aliquot_tag": "ALQ_ba549cba", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.RNA-Seq.transcriptome.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.transcriptome.gdc_realn.bam 11636262843 BAM transcriptome harmonized CPTAC3 26f0da45-328e-43d5-8b7d-376e26d907db 188e99b4fc156c6f1b248719c18001f6 {"aliquot_tag": "ALQ_3514691a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.WGS.N C3L-06169 LSCC WGS blood_normal CPT0294750002 CPT0294750002.WholeGenome.RP-2158.bam 23131487388 BAM submitted_aligned CPTAC3 863ed97c-b507-40cc-9d52-eb9bc80f4dce f3be670ac2308b9ef6dd5c21a43d0f6e {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06169.WGS.N.hg38 C3L-06169 LSCC WGS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wgs_gdc_realn.bam 68073812557 BAM harmonized CPTAC3 535ed714-d6e5-4a74-99b7-ba78acdffa9a ca785a75ad07eacb80af64855f386356 {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06169.WGS.T C3L-06169 LSCC WGS tumor CPT0294630006 CPT0294630006.WholeGenome.RP-2158.bam 26327788819 BAM submitted_aligned CPTAC3 ccc003ce-b21b-405f-8a0e-4939ed785d28 5b7e1769250f6b95090e832ee88fb3c1 {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.WGS.T.hg38 C3L-06169 LSCC WGS tumor CPT0294630006 4aa15ba7-8f09-406f-9950-0dbaad1751f0_wgs_gdc_realn.bam 75314839042 BAM harmonized CPTAC3 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 08f48bc6da1c953863010b9e7db4df1e {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.WXS.A C3L-06169 LSCC WXS tissue_normal CPT0294650006 CPT0294650006.WholeExome.RP-1303.bam 25779139369 BAM submitted_aligned CPTAC3 51ed7158-554a-4acf-8d89-c53ba13e68c8 a80b1f296a372dc104710d7ca55f2414 {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.WXS.A.hg38 C3L-06169 LSCC WXS tissue_normal CPT0294650006 8d4aef10-e8c5-491f-a95e-2cd4f8ab9526_wxs_gdc_realn.bam 36011711312 BAM harmonized CPTAC3 b681489b-d999-4b02-89ea-10b4ae0a31af 7196530d68971a5c6f7a2eedf0cc6241 {"aliquot_tag": "ALQ_2aeb812b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06169.WXS.N C3L-06169 LSCC WXS blood_normal CPT0294750002 CPT0294750002.WholeExome.RP-1303.bam 26819712412 BAM submitted_aligned CPTAC3 aff3cbf9-0477-4954-961c-665c62e261e8 8907f20bc4a907d44e49cb7707ac3097 {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06169.WXS.N.hg38 C3L-06169 LSCC WXS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wxs_gdc_realn.bam 36419327281 BAM harmonized CPTAC3 e4516e9f-55ec-4d26-95da-94432a652dd6 bb7d77083bd16a530863ad73f24f685f {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06169.WXS.T C3L-06169 LSCC WXS tumor CPT0294630006 CPT0294630006.WholeExome.RP-1303.bam 19082996953 BAM submitted_aligned CPTAC3 57f91759-b383-4792-971a-3402dfe2f5c4 71efa1f248b1785073c7aa2f2fea604d {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06169.WXS.T.hg38 C3L-06169 LSCC WXS tumor CPT0294630006 4aa15ba7-8f09-406f-9950-0dbaad1751f0_wxs_gdc_realn.bam 26741225402 BAM harmonized CPTAC3 f1cc54af-4370-4abb-82c2-d0d4dc3f7591 6b4e5fc677d27ac25cc5b86a8223eb0e {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06352.MethArray.Green.Tpb C3L-06352 AML Methylation_Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1d1c7158-0399-487d-b0c4-1ffee98a8a69 055d537c5585acfbc599cdaef8780f3a {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.MethArray.Red.Tpb C3L-06352 AML Methylation_Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 49fca346-5913-4a2f-9a98-7bd5933f9003 3c4e93258408c0184ef883170f4f7722 {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.miRNA-Seq.S16_L001_R1.Tpb C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 220125_UNC32-K00270_0311_AHMNYYBBXY_TACAGC_S16_L001_R1_001.unaln.bam 205706771 BAM S16_L001_R1 submitted_unaligned CPTAC3 d956c69e-9c39-4a59-bba7-07646578e580 8d85195c2d541157f78c189911be2061 {"aliquot_tag": "ALQ_57b0d569", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.miRNA-Seq.Tpb.hg38 C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 da7b1cf6-bbce-4dcb-8dd0-cbd1333098a4_mirnaseq_gdc_realn.bam 227074556 BAM harmonized CPTAC3 444a7c94-15bc-4a6e-973d-db7308415f8a 2cd01cd62c31dfb0e543244de15c22e9 {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.RNA-Seq.chimeric.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.chimeric.gdc_realn.bam 518916507 BAM chimeric harmonized CPTAC3 bed5c220-6fb6-443c-80e6-59103b056e40 eb925193739a84ef7d23b4f2d40f8ac9 {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.RNA-Seq.genomic.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.genomic.gdc_realn.bam 7409333053 BAM genomic harmonized CPTAC3 df2eb2cf-9187-4bda-9fe4-071966a85514 839f97d20539d55d901dedfccb0e45c5 {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.RNA-Seq.S22_L006_R1.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 3712758461 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 410f0722-f272-45d3-bb61-d02385a8dd41 7e625254b2148041f7a28e3639f4f0d3 {"aliquot_tag": "ALQ_57b0d569", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.RNA-Seq.S22_L006_R2.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 3973065633 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 94ab1d18-35e2-4337-8e4c-79dc8f176cf7 7e877e34ae95d15c4c0ba85fa22b22f6 {"aliquot_tag": "ALQ_57b0d569", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.RNA-Seq.transcriptome.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.transcriptome.gdc_realn.bam 7791025996 BAM transcriptome harmonized CPTAC3 90e5bdbb-b9a2-4724-9a3d-e9bc9379e248 da55d7c26252b41519c47a93ab11bc1d {"aliquot_tag": "ALQ_57b0d569", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.WGS.Nbc C3L-06352 AML WGS buccal_normal CPT0323570003 CPT0323570003.WholeGenome.RP-2158.bam 42112140789 BAM submitted_aligned CPTAC3 3b6969ce-e96b-4319-b1ec-b571378c826f 6622eb6d2ad9073525c42f51ae92c150 {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06352.WGS.Nbc.hg38 C3L-06352 AML WGS buccal_normal CPT0323570003 8f59793f-4cee-4f3f-a8ef-4203804d115b_wgs_gdc_realn.bam 123922636659 BAM harmonized CPTAC3 27595487-bbe0-436e-b38c-1d86aa50d8b0 31d9be2554d937486f907fa66ffa25ca {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06352.WGS.Tpb C3L-06352 AML WGS tumor_peripheral_blood CPT0323600002 CPT0323600002.WholeGenome.RP-2158.bam 55820043679 BAM submitted_aligned CPTAC3 83adf58f-bf8e-48c6-90fc-f3ee03c01661 11f29e029febb0269c24401e0a30ca1b {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.WGS.Tpb.hg38 C3L-06352 AML WGS tumor_peripheral_blood CPT0323600002 686262c4-f449-4965-b65c-27019801671d_wgs_gdc_realn.bam 169114943867 BAM harmonized CPTAC3 17c81b9e-2685-4178-8bb1-046c9380bfba c7da80d8a3d181877b248f896bee1594 {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.WXS.Nbc C3L-06352 AML WXS buccal_normal CPT0323570003 CPT0323570003.WholeExome.RP-1303.bam 30059228254 BAM submitted_aligned CPTAC3 7e57c65c-2fef-4746-b7f9-63d723d05d13 13a861e0c96ffcc91dcfe64c7878d095 {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06352.WXS.Nbc.hg38 C3L-06352 AML WXS buccal_normal CPT0323570003 8f59793f-4cee-4f3f-a8ef-4203804d115b_wxs_gdc_realn.bam 41208313693 BAM harmonized CPTAC3 f09dcaa8-87ac-4636-aec0-3b31d72597e9 ad5e6e41527eee6aaeeccbd5f0cdd21b {"aliquot_tag": "ALQ_296362f1", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06352.WXS.Tpb C3L-06352 AML WXS tumor_peripheral_blood CPT0323600002 CPT0323600002.WholeExome.RP-1303.bam 24667448921 BAM submitted_aligned CPTAC3 331f7922-6dfb-49fc-a9b2-3f8fabcffeab e9f6511d11cf54b591a8b23c8bd2592e {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06352.WXS.Tpb.hg38 C3L-06352 AML WXS tumor_peripheral_blood CPT0323600002 686262c4-f449-4965-b65c-27019801671d_wxs_gdc_realn.bam 33935153637 BAM harmonized CPTAC3 a47a0dda-4b98-478b-ae1f-3220e5d4b9b8 9634c8c218279e62b7cdeccdbcd9bb7d {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06356.MethArray.Green.Tbm C3L-06356 AML Methylation_Array tumor_bone_marrow CPT0345400002 205555390164_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 97dbc112-7de3-4c3f-b028-bbd2114d73b0 8876cdb806c9ba08f77e1e86f5aa0744 {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.MethArray.Red.Tbm C3L-06356 AML Methylation_Array tumor_bone_marrow CPT0345400002 205555390164_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 c112e12c-314c-4068-aa48-e6b7d200a4df 89eca0030ed0ad2bf620a10e376cc1dc {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.miRNA-Seq.S24_L007_R1.Tbm C3L-06356 AML miRNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC31-K00269_0297_AHKCFKBBXY_GCCAAT_S24_L007_R1_001.unaln.bam 251208109 BAM S24_L007_R1 submitted_unaligned CPTAC3 9ace19a4-0bbb-4f1e-b11a-e833f2803278 56f05e7386b26ef2141e7d79ff23d478 {"aliquot_tag": "ALQ_bfc748df", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.miRNA-Seq.Tbm.hg38 C3L-06356 AML miRNA-Seq tumor_bone_marrow CPT0345410002 f279d895-adb4-4952-8071-e01ffb8add5a_mirnaseq_gdc_realn.bam 276594644 BAM harmonized CPTAC3 85378ee8-d4ce-43ba-be5d-8be0de927d46 53f97210688d01ec132f0f9c36f2b1e4 {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.RNA-Seq.chimeric.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.chimeric.gdc_realn.bam 79657723 BAM chimeric harmonized CPTAC3 f4274578-1a03-4192-930d-d8f2075507fe 4f92f13f290bbe804f9ca8b46c1d98ed {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.RNA-Seq.genomic.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.genomic.gdc_realn.bam 6793964486 BAM genomic harmonized CPTAC3 3a9113a3-17a1-4b07-8fd8-0bdb076ec586 3dba23cc3f535a0b343ecbfad8d4a1de {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.RNA-Seq.S7_L002_R1.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 3354501657 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 982e7649-c13c-4393-b05e-0d1ac8228221 c44535a802deff475b20563b55ede329 {"aliquot_tag": "ALQ_bfc748df", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.RNA-Seq.S7_L002_R2.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 3644776298 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 42345a72-3860-463d-bccb-53bd28182ed9 00b213ba12c54b566dfaa5ec9dcba834 {"aliquot_tag": "ALQ_bfc748df", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.RNA-Seq.transcriptome.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.transcriptome.gdc_realn.bam 8182887652 BAM transcriptome harmonized CPTAC3 0c236da3-5602-4948-ba04-8fc21ab32111 a0ebc22ca1964a9a245d46f2f1d5f179 {"aliquot_tag": "ALQ_bfc748df", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.WGS.Nbc C3L-06356 AML WGS buccal_normal CPT0345370003 CPT0345370003.WholeGenome.RP-2158.bam 48252315460 BAM submitted_aligned CPTAC3 7ac2c1f7-595b-4c3d-9027-965910946d8a f6730c26502c1dd1a42e9f37b40c370d {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06356.WGS.Nbc.hg38 C3L-06356 AML WGS buccal_normal CPT0345370003 6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wgs_gdc_realn.bam 146301175318 BAM harmonized CPTAC3 77636d17-c52a-44b3-9a13-5a4a0e06d660 5b1beb789e3077f2ead18d3155582620 {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06356.WGS.Tbm C3L-06356 AML WGS tumor_bone_marrow CPT0345400002 CPT0345400002.WholeGenome.RP-2158.bam 50235996699 BAM submitted_aligned CPTAC3 b7068ea0-6b4d-4840-96be-636f9a0908db cd6f23a4cbfc2c29ba1229bb96c90ec9 {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.WGS.Tbm.hg38 C3L-06356 AML WGS tumor_bone_marrow CPT0345400002 cb6684bd-ab94-47bb-948f-14e8dc209b0e_wgs_gdc_realn.bam 150032150896 BAM harmonized CPTAC3 7e9fdf55-4553-45ce-b272-d72a89ebeccd bba8ad155bb88195f435179077464b3b {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.WXS.Nbc C3L-06356 AML WXS buccal_normal CPT0345370003 CPT0345370003.WholeExome.RP-1303.bam 31532076442 BAM submitted_aligned CPTAC3 cd9059cf-fad4-4108-8889-200bb9189a3b ddb13f8834b9850300357b8bc853ec26 {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06356.WXS.Nbc.hg38 C3L-06356 AML WXS buccal_normal CPT0345370003 6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wxs_gdc_realn.bam 44119199249 BAM harmonized CPTAC3 87a3ee1c-badb-4f3b-af8e-6ad4f68b7be8 caa855b88e5b50e29de518bad89b1232 {"aliquot_tag": "ALQ_5a85bd51", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06356.WXS.Tbm C3L-06356 AML WXS tumor_bone_marrow CPT0345400002 CPT0345400002.WholeExome.RP-1303.bam 26468768432 BAM submitted_aligned CPTAC3 ab5e7de8-ab4f-44e1-b317-04a309e5dc82 7dc91b6ff48b7b3322bc62612a6aee4b {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06356.WXS.Tbm.hg38 C3L-06356 AML WXS tumor_bone_marrow CPT0345400002 cb6684bd-ab94-47bb-948f-14e8dc209b0e_wxs_gdc_realn.bam 37177646298 BAM harmonized CPTAC3 2493d649-636d-4750-b041-634e8ead6c2f 1214f88b43c6097f598361684354e44f {"aliquot_tag": "ALQ_82a7616f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06357.MethArray.Green.Tbm C3L-06357 AML Methylation_Array tumor_bone_marrow CPT0345500002 204930640111_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 35b81a62-b1e6-4083-a8d5-261b0e301db4 a849659a3d52804956bb7c4b301f6dfe {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.MethArray.Red.Tbm C3L-06357 AML Methylation_Array tumor_bone_marrow CPT0345500002 204930640111_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 be543670-c9d6-40e8-a3c7-77644149bed5 b9ed5979343986dd09426b7c04c9abeb {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.miRNA-Seq.S20_L007_R1.Tbm C3L-06357 AML miRNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAGATC_S20_L007_R1_001.unaln.bam 179816208 BAM S20_L007_R1 submitted_unaligned CPTAC3 830dbcbb-a1fc-4b75-aca1-4d8c7e115aaf 1d22e3e2f1487b9808c740d117acb670 {"aliquot_tag": "ALQ_749b9b7a", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.miRNA-Seq.Tbm.hg38 C3L-06357 AML miRNA-Seq tumor_bone_marrow CPT0345510002 c2dff194-89fd-42da-aeb1-af413d1c9291_mirnaseq_gdc_realn.bam 192485380 BAM harmonized CPTAC3 43d3f986-b039-4a99-86ed-1225889447bc 903b86ecf33d468e855506214ab420f0 {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.RNA-Seq.chimeric.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.chimeric.gdc_realn.bam 163160573 BAM chimeric harmonized CPTAC3 5d8cabbc-d0cf-43cd-b935-bb64a9dcb4e0 82210fbd8a89ea54fb35ecbdd25c479d {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.RNA-Seq.genomic.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.genomic.gdc_realn.bam 9544647466 BAM genomic harmonized CPTAC3 eb47d829-8369-4411-9481-2eb11a4ae6f0 fe9e320e3e5c8081c346873ed4fb84f0 {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.RNA-Seq.S6_L002_R1.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R1_001.fastq.gz 4878621442 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 ec1e8eae-c0b1-4f4f-84a1-7c89b4de576a f7165f7c2aa884755c4826a524f30b64 {"aliquot_tag": "ALQ_749b9b7a", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.RNA-Seq.S6_L002_R2.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R2_001.fastq.gz 5400504085 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 e5daae8a-9e87-4dde-a643-4063ff946fc6 dcbfb2fc4663176a129316f035bd3049 {"aliquot_tag": "ALQ_749b9b7a", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.RNA-Seq.transcriptome.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.transcriptome.gdc_realn.bam 13950974279 BAM transcriptome harmonized CPTAC3 1cf09892-a0e8-4cf8-9881-2e7cbf08a68c ae1766f440f0426d26e2707a50dda499 {"aliquot_tag": "ALQ_749b9b7a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.WGS.Nbc C3L-06357 AML WGS buccal_normal CPT0345470003 CPT0345470003.WholeGenome.RP-2158.bam 50526220414 BAM submitted_aligned CPTAC3 f189f79f-e7be-4668-a0d0-00184f05f3d7 114cf72062570c44770f374e024b6ccd {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06357.WGS.Nbc.hg38 C3L-06357 AML WGS buccal_normal CPT0345470003 38def854-7f69-4574-8538-a33f2ddac72d_wgs_gdc_realn.bam 147818241279 BAM harmonized CPTAC3 0ae5fa74-35c4-400e-8946-969a354b3d0d 0cb9027e63e110b989ca20f9adda4bf1 {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06357.WGS.Tbm C3L-06357 AML WGS tumor_bone_marrow CPT0345500002 CPT0345500002.WholeGenome.RP-2158.bam 51968178021 BAM submitted_aligned CPTAC3 dbc357e6-d7bd-41fd-be21-d8a6a6db81ba 1c0f309cb864d12ab1afe2d5e7ffea8d {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.WGS.Tbm.hg38 C3L-06357 AML WGS tumor_bone_marrow CPT0345500002 e9027e42-32a8-4775-b3b5-35a50556e467_wgs_gdc_realn.bam 157174880176 BAM harmonized CPTAC3 f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84 569515849d452e6316e6be08ed0e86ad {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.WXS.Nbc C3L-06357 AML WXS buccal_normal CPT0345470003 CPT0345470003.WholeExome.RP-1303.bam 26147005652 BAM submitted_aligned CPTAC3 4b35fea2-1534-4144-9c13-d703373be3a1 a0c14cbd52d7025ac070e9ff7b5ee1a5 {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06357.WXS.Nbc.hg38 C3L-06357 AML WXS buccal_normal CPT0345470003 38def854-7f69-4574-8538-a33f2ddac72d_wxs_gdc_realn.bam 36611768867 BAM harmonized CPTAC3 27df62fa-1212-431d-8211-9981886b123d 9c8d7c8df01fa85f7e34e45d37e8da86 {"aliquot_tag": "ALQ_47808de9", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06357.WXS.Tbm C3L-06357 AML WXS tumor_bone_marrow CPT0345500002 CPT0345500002.WholeExome.RP-1303.bam 21412179681 BAM submitted_aligned CPTAC3 2d38bd3e-a284-40b2-8a6e-bf9d0e14bd6f 77cb4e63410d0c03712a253697097778 {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06357.WXS.Tbm.hg38 C3L-06357 AML WXS tumor_bone_marrow CPT0345500002 e9027e42-32a8-4775-b3b5-35a50556e467_wxs_gdc_realn.bam 29740004887 BAM harmonized CPTAC3 2fecf565-75c1-4474-a90e-30201dc60394 cdb8e737e10452f28bbba58027263b30 {"aliquot_tag": "ALQ_49fbb2ca", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06361.MethArray.Green.Tbm C3L-06361 AML Methylation_Array tumor_bone_marrow CPT0345610002 205555390128_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2026d108-87b9-4803-b924-34db203c40e5 29235d0d9739a3f7862a2efc9661965d {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.MethArray.Red.Tbm C3L-06361 AML Methylation_Array tumor_bone_marrow CPT0345610002 205555390128_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 0a27b125-62a5-49e2-b3be-3464c76f2811 42b184919ce526bef9e4e52692cbfb11 {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.miRNA-Seq.S15_L007_R1.Tbm C3L-06361 AML miRNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACTTGA_S15_L007_R1_001.unaln.bam 201814939 BAM S15_L007_R1 submitted_unaligned CPTAC3 fb9945a0-1025-40fd-9b6d-de0968f78862 4574006d61a22fe641b3218967bd9915 {"aliquot_tag": "ALQ_b5af9304", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06361.miRNA-Seq.Tbm.hg38 C3L-06361 AML miRNA-Seq tumor_bone_marrow CPT0345620002 d98b9f07-f33f-4100-b762-329adc0cf2cd_mirnaseq_gdc_realn.bam 223143668 BAM harmonized CPTAC3 905ed7ac-b3ed-4d32-b15c-3eb3aa0be6c4 97663b19a158707bfaa8cb074fd54016 {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06361.RNA-Seq.chimeric.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.chimeric.gdc_realn.bam 107094388 BAM chimeric harmonized CPTAC3 695b1c20-df43-4b00-a41f-2dbb74616b51 a18dae88cf214917979ed6557076c08d {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.RNA-Seq.genomic.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.genomic.gdc_realn.bam 8021143089 BAM genomic harmonized CPTAC3 3957fa69-3161-4368-8db1-11b689f1b1e1 299a7b23ad190b470301243651e5feaa {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.RNA-Seq.S8_L002_R1.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 3984018859 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 22f88357-a1a0-4130-9373-ede06a3ee0d8 18c33a95fd2bb3c6770241ae08fac556 {"aliquot_tag": "ALQ_b5af9304", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06361.RNA-Seq.S8_L002_R2.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4397216742 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 44c74e6a-9e07-4895-9db3-443802ec3baa 812c73313915a7eab1a7e33772a0d293 {"aliquot_tag": "ALQ_b5af9304", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06361.RNA-Seq.transcriptome.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.transcriptome.gdc_realn.bam 10281809039 BAM transcriptome harmonized CPTAC3 ac125192-2b26-453c-97aa-acbe528d68b3 019a5f380e6f847f1c1a1d1c4715f718 {"aliquot_tag": "ALQ_b5af9304", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.WGS.Tbm C3L-06361 AML WGS tumor_bone_marrow CPT0345610002 CPT0345610002.WholeGenome.RP-2158.bam 49357606952 BAM submitted_aligned CPTAC3 aa2fa1d3-f026-4c30-8499-199097ec3d65 352b8105c86ead1db8d2042cc202a04e {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.WGS.Tbm.hg38 C3L-06361 AML WGS tumor_bone_marrow CPT0345610002 2ad00ca6-3988-4545-b340-4d7bf367c999_wgs_gdc_realn.bam 138306388754 BAM harmonized CPTAC3 3f00b827-56dc-41a1-ad3b-6c22d7f9b007 5136acbb7f2d201071b0466b7c5ec7c7 {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.WXS.Nbc C3L-06361 AML WXS buccal_normal CPT0345580003 CPT0345580003.WholeExome.RP-1303.bam 27053926560 BAM submitted_aligned CPTAC3 4f572ab2-fc2c-4c3a-b01c-02ec710a6feb bb1237acc17d97af65ec94e3cdadeb49 {"aliquot_tag": "ALQ_e8cc99d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06361.WXS.Nbc.hg38 C3L-06361 AML WXS buccal_normal CPT0345580003 b6af685c-5835-4a9f-9122-16af2393145e_wxs_gdc_realn.bam 36905068313 BAM harmonized CPTAC3 da2e2061-120f-44eb-90c4-e49d0abe0df4 190120d37819b67c2e582ddbd338b746 {"aliquot_tag": "ALQ_e8cc99d", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06361.WXS.Tbm C3L-06361 AML WXS tumor_bone_marrow CPT0345610002 CPT0345610002.WholeExome.RP-1303.bam 27276242048 BAM submitted_aligned CPTAC3 7ce15406-83cc-4f64-b510-0b5e8f057478 9199c51b80fd428ba6fffd49357c6f15 {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06361.WXS.Tbm.hg38 C3L-06361 AML WXS tumor_bone_marrow CPT0345610002 2ad00ca6-3988-4545-b340-4d7bf367c999_wxs_gdc_realn.bam 38548533226 BAM harmonized CPTAC3 7b21cc41-fe38-43fe-b81c-d4a64da6761a f4882f757eb174e63d45807612423aaf {"aliquot_tag": "ALQ_f20fe9d4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06364.MethArray.Green.Tbm C3L-06364 AML Methylation_Array tumor_bone_marrow CPT0345720002 205555390174_R03C01_Grn.idat 13677965 IDAT Green NA CPTAC3 c522cd8e-5d65-4836-b04e-60da756a483a 02ff8cd072e47c4e002c6ffd974f149d {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.MethArray.Red.Tbm C3L-06364 AML Methylation_Array tumor_bone_marrow CPT0345720002 205555390174_R03C01_Red.idat 13677965 IDAT Red NA CPTAC3 63957fb6-4554-48ee-a110-778652c31dab d1728eb2c00a9d424761f00f25ee9fae {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.miRNA-Seq.S23_L007_R1.Tbm C3L-06364 AML miRNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC31-K00269_0297_AHKCFKBBXY_GATCAG_S23_L007_R1_001.unaln.bam 224232551 BAM S23_L007_R1 submitted_unaligned CPTAC3 73d5f6bc-fe37-479d-b327-e7f24101a6c2 e57566fbe1e788407f37dfd0145dfece {"aliquot_tag": "ALQ_43936911", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.miRNA-Seq.Tbm.hg38 C3L-06364 AML miRNA-Seq tumor_bone_marrow CPT0345730002 48fe5fe7-03cc-4705-97c8-31b0d81575d7_mirnaseq_gdc_realn.bam 240428330 BAM harmonized CPTAC3 f362b63a-0c7c-4d33-870c-e9c1e276ed6d 118ab3b987a29129b0e6826060970b8e {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.RNA-Seq.chimeric.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.chimeric.gdc_realn.bam 120990307 BAM chimeric harmonized CPTAC3 77948801-8269-4c0a-89d3-a7eadd55bc93 6653fcdeebbd772fd274832a451c16c1 {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.RNA-Seq.genomic.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.genomic.gdc_realn.bam 7744140655 BAM genomic harmonized CPTAC3 3befe369-969b-4fd4-8002-7aa189f89d63 901d58034c1e378846d1918aa73ae5eb {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.RNA-Seq.S1_L001_R1.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3941468854 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 8d2c68f5-5586-4a61-8ade-0ab1e8ed4aee dcaf4ab825c872381ff275c73ea402f0 {"aliquot_tag": "ALQ_43936911", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.RNA-Seq.S1_L001_R2.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4473539092 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 bae466cc-d600-4db8-a4bb-915e6fac032f cf8cafed52e63a567ad7f6430630b71b {"aliquot_tag": "ALQ_43936911", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.RNA-Seq.transcriptome.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.transcriptome.gdc_realn.bam 8510092506 BAM transcriptome harmonized CPTAC3 93b1a0ac-ae22-4d49-9bb4-c3b3860c0c05 a4ed99f767e3350d7370e012e62638f7 {"aliquot_tag": "ALQ_43936911", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.WGS.Nbc C3L-06364 AML WGS buccal_normal CPT0345690003 CPT0345690003.WholeGenome.RP-2158.bam 55619170776 BAM submitted_aligned CPTAC3 c97c6d20-7a47-4ad9-91dd-feb8aa5f128e 451147fbf31f9aab98861ee7f03c4058 {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06364.WGS.Nbc.hg38 C3L-06364 AML WGS buccal_normal CPT0345690003 9b14a9ae-a157-467e-9dec-3fe18c5de85b_wgs_gdc_realn.bam 164724639010 BAM harmonized CPTAC3 04197309-7cc3-4385-a294-284c8c7e108d e1b301405b272c42f49074b3282f03ae {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06364.WGS.Tbm C3L-06364 AML WGS tumor_bone_marrow CPT0345720002 CPT0345720002.WholeGenome.RP-2158.bam 56104990151 BAM submitted_aligned CPTAC3 2697576c-ea04-464a-b67a-c9a4a815e192 6ef8acd5750d23e739d61eb794f66008 {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.WGS.Tbm.hg38 C3L-06364 AML WGS tumor_bone_marrow CPT0345720002 6ad00ada-9022-47e2-bcc0-6e89ebadd037_wgs_gdc_realn.bam 157591079901 BAM harmonized CPTAC3 d61d96da-f617-4d13-adae-d615f336047c fdb57025282c6e3d4468c541fb3a5243 {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.WXS.Nbc C3L-06364 AML WXS buccal_normal CPT0345690003 CPT0345690003.WholeExome.RP-1303.bam 23109004460 BAM submitted_aligned CPTAC3 21ebf814-ea24-49fe-96fb-3e567393d3c7 7c503dd28f46ec3cf3a92269d0a8fdbf {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06364.WXS.Nbc.hg38 C3L-06364 AML WXS buccal_normal CPT0345690003 9b14a9ae-a157-467e-9dec-3fe18c5de85b_wxs_gdc_realn.bam 32230780864 BAM harmonized CPTAC3 781cad08-5f3f-483a-b56a-0415097dd98e 7847840ddd16d3617515a46a3d254ffa {"aliquot_tag": "ALQ_b5789283", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06364.WXS.Tbm C3L-06364 AML WXS tumor_bone_marrow CPT0345720002 CPT0345720002.WholeExome.RP-1303.bam 22350725679 BAM submitted_aligned CPTAC3 27ffd892-f056-4e29-bdec-908c4cf746e4 1d78cf0c06a59d68d9a499ca374eb652 {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06364.WXS.Tbm.hg38 C3L-06364 AML WXS tumor_bone_marrow CPT0345720002 6ad00ada-9022-47e2-bcc0-6e89ebadd037_wxs_gdc_realn.bam 30566871238 BAM harmonized CPTAC3 4ddad72e-d954-4d7d-a59e-20d0ddcbd7f5 5a47228d1a6e5c5ed7bd922f0d2038aa {"aliquot_tag": "ALQ_7ef340a1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06367.MethArray.Green.Tbm C3L-06367 AML Methylation_Array tumor_bone_marrow CPT0410800002 205555380155_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7964f20a-77f4-41d4-aa4b-5d0c5cb4a69f 4894a21cc7771c258f63901f773f0113 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.MethArray.Red.Tbm C3L-06367 AML Methylation_Array tumor_bone_marrow CPT0410800002 205555380155_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 72159bbb-4cf6-4d11-afa6-79a588e0a392 623e2a6d8619cb25b3b41976b439bd8c {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.miRNA-Seq.S28_L005_R1.Tbm C3L-06367 AML miRNA-Seq tumor_bone_marrow CPT0410810002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACGAT_S28_L005_R1_001.unaln.bam 315340165 BAM S28_L005_R1 submitted_unaligned CPTAC3 85d9e70e-cebd-402d-8fea-b048242b92cc d0b8ffbe05511c3b9f515a24a0832861 {"aliquot_tag": "ALQ_b6bcc4ae", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.miRNA-Seq.Tbm.hg38 C3L-06367 AML miRNA-Seq tumor_bone_marrow CPT0410810002 d90e8127-5f30-494b-afcb-64958f64cc98_mirnaseq_gdc_realn.bam 330680350 BAM harmonized CPTAC3 75176985-d4b1-41a5-bb18-a366b02db27f 341a2081635ec71688ee156a1198c831 {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.RNA-Seq.chimeric.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.chimeric.gdc_realn.bam 273932961 BAM chimeric harmonized CPTAC3 6486f27b-4f86-4e7f-a7a3-2b4926f29b10 a598d5d0eb325ac0fde798626e500caf {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.RNA-Seq.genomic.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.genomic.gdc_realn.bam 9396216656 BAM genomic harmonized CPTAC3 7bf853f8-ccc2-4120-b90b-317bfbeb65ad bf65b55b73fc63a3af1a86dc1f9306fa {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.RNA-Seq.S1_L001_R1.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4138889339 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 9fb2e454-11e7-44fd-97a5-abd68cc50890 55846c6451f92b1aba9189bd815d7705 {"aliquot_tag": "ALQ_b6bcc4ae", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.RNA-Seq.S1_L001_R2.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4468004169 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 9ff587b2-7250-4cae-b7f7-6be208c9ae33 a097268f192849724904d6ade5eded45 {"aliquot_tag": "ALQ_b6bcc4ae", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.RNA-Seq.transcriptome.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.transcriptome.gdc_realn.bam 8002086940 BAM transcriptome harmonized CPTAC3 7a5e3e6b-ffff-4642-9732-89f4c008a725 aba62f6ab3111edd3fee7f7f67dc1392 {"aliquot_tag": "ALQ_b6bcc4ae", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.WGS.Nbc C3L-06367 AML WGS buccal_normal CPT0410770001 CPT0410770001.WholeGenome.RP-2158.bam 70332252193 BAM submitted_aligned CPTAC3 7a527476-40ff-4e19-b840-d01296c606f2 846fd555ce9920a3102db4ad68a26972 {"aliquot_tag": "ALQ_51a3d261", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06367.WGS.Nbc.hg38 C3L-06367 AML WGS buccal_normal CPT0410770001 0190064e-4d63-40c7-819c-93065350c542_wgs_gdc_realn.bam 203628893400 BAM harmonized CPTAC3 d72473d5-e10f-4d2c-967b-af4c443685bd a187d85ecb071caecac48f8c5083db32 {"aliquot_tag": "ALQ_51a3d261", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06367.WGS.Tbm C3L-06367 AML WGS tumor_bone_marrow CPT0410800002 CPT0410800002.WholeGenome.RP-2158.bam 57348951676 BAM submitted_aligned CPTAC3 1566b940-537d-4efe-91ee-66543cfb56c1 f3126bde2ccef04c96024dee388cef09 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.WGS.Tbm.hg38 C3L-06367 AML WGS tumor_bone_marrow CPT0410800002 99b6afa0-9d8a-46f6-8038-5c90c81079a0_wgs_gdc_realn.bam 168586222152 BAM harmonized CPTAC3 4b683e0d-6960-41cb-99c1-ed1ab9efa601 11c565325622546b20e89f13d6a8d8e6 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.WXS.Tbm C3L-06367 AML WXS tumor_bone_marrow CPT0410800002 CPT0410800002.WholeExome.RP-1303.bam 17821458501 BAM submitted_aligned CPTAC3 8f18a1d8-32c5-4ec1-8e64-f71fa919e4d7 e2281a5f9689cb4e947122b2a8c85822 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06367.WXS.Tbm.hg38 C3L-06367 AML WXS tumor_bone_marrow CPT0410800002 99b6afa0-9d8a-46f6-8038-5c90c81079a0_wxs_gdc_realn.bam 24544292588 BAM harmonized CPTAC3 1a49636a-6a49-406e-8e41-a7c17b19b084 9e0e8462f691eb64e5c15098a31c8439 {"aliquot_tag": "ALQ_8bdced1e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06368.MethArray.Green.Tpb C3L-06368 AML Methylation_Array tumor_peripheral_blood CPT0410410002 205705520128_R06C01_Grn.idat 13677886 IDAT Green NA CPTAC3 51fdafb1-e612-4aad-9827-910512d68387 6c6e638bb9a946f266fd5f8947429521 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06368.MethArray.Red.Tpb C3L-06368 AML Methylation_Array tumor_peripheral_blood CPT0410410002 205705520128_R06C01_Red.idat 13677886 IDAT Red NA CPTAC3 de5be602-4db6-4f55-8327-b84108002dad aaf53265efc3bd175dcddba410c8cd56 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06368.miRNA-Seq.S43_L003_R1.Tbm C3L-06368 AML miRNA-Seq tumor_bone_marrow CPT0410390002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATGAGC_S43_L003_R1_001.unaln.bam 194735341 BAM S43_L003_R1 submitted_unaligned CPTAC3 b1f4e05f-6025-4a3c-8e7b-8178a1fc763b 8b58a5cfaeee08fb791c6d354d0a553e {"aliquot_tag": "ALQ_ec0b7fac", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06368.miRNA-Seq.Tbm.hg38 C3L-06368 AML miRNA-Seq tumor_bone_marrow CPT0410390002 34388533-55c7-4511-b90c-ae46f922d89f_mirnaseq_gdc_realn.bam 215482150 BAM harmonized CPTAC3 9ba5b742-39d0-487d-818d-45d243a1d61a 73cf8b1d45fe4d1e5bb4e7d139c068dd {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06368.RNA-Seq.chimeric.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.chimeric.gdc_realn.bam 807659166 BAM chimeric harmonized CPTAC3 410c254d-68bc-49e7-bc77-17fede4bbedb e37fd2b0d2c67dc1fdc72588fb1cb01a {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06368.RNA-Seq.genomic.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.genomic.gdc_realn.bam 8147258324 BAM genomic harmonized CPTAC3 d83aa4ed-0be6-4aa6-9afe-ca6f13c60cef 80d8b53938bb0cf47d19d366fa77464b {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06368.RNA-Seq.S20_L005_R1.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4032905959 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 8d70e8fc-2f6a-4da7-8a13-3cb09163563d f2ace103a3847a835121350e659065ef {"aliquot_tag": "ALQ_ec0b7fac", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06368.RNA-Seq.S20_L005_R2.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 4345871199 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 08b3a1d2-9038-4e93-b052-9438bf1ec5cd eef8682bdafdf5c9cc67c32ba9547b1a {"aliquot_tag": "ALQ_ec0b7fac", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06368.RNA-Seq.transcriptome.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.transcriptome.gdc_realn.bam 7621681346 BAM transcriptome harmonized CPTAC3 112bc06b-307d-4858-a8cf-c2cd850851a0 3a1d3ff998b3819aa6739054d3e10f2f {"aliquot_tag": "ALQ_ec0b7fac", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06368.WGS.Nbc C3L-06368 AML WGS buccal_normal CPT0410360001 CPT0410360001.WholeGenome.RP-2158.bam 48116149732 BAM submitted_aligned CPTAC3 20cfe70e-f74a-44be-98fb-10650f5bbc25 65d229cd519bb74e46e19dec40445755 {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06368.WGS.Nbc.hg38 C3L-06368 AML WGS buccal_normal CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wgs_gdc_realn.bam 141822168429 BAM harmonized CPTAC3 34caf708-795e-4b5b-9aa0-f958cc5dfdb0 aa8e36cc428a58dc58ba222c602338fd {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06368.WGS.Tpb C3L-06368 AML WGS tumor_peripheral_blood CPT0410410002 CPT0410410002.WholeGenome.RP-2158.bam 47832096739 BAM submitted_aligned CPTAC3 178f44ea-57cf-4254-9d8e-27e8779aa3bb 2c7bde4ecd791172592c9e8651d57944 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06368.WGS.Tpb.hg38 C3L-06368 AML WGS tumor_peripheral_blood CPT0410410002 bb9ec808-6239-4353-950e-64991f8acfa6_wgs_gdc_realn.bam 142409916076 BAM harmonized CPTAC3 09a49042-9bfb-4c24-9643-e4c0de3a62d6 ab759607d1e500e074b06c5d1f67c5f4 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06368.WXS.Nbc C3L-06368 AML WXS buccal_normal CPT0410360001 CPT0410360001.WholeExome.RP-1303.bam 26741144956 BAM submitted_aligned CPTAC3 098dfaad-ee4e-466b-9eb8-2a84b87448de d999251a7c96802fee7562a4099639f6 {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06368.WXS.Nbc.hg38 C3L-06368 AML WXS buccal_normal CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wxs_gdc_realn.bam 37045085962 BAM harmonized CPTAC3 431be984-ae6d-416d-9841-1b56a4ceeb6f 82d976da9b89640bc1b1e5f70754d678 {"aliquot_tag": "ALQ_f752b9c7", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06368.WXS.Tpb C3L-06368 AML WXS tumor_peripheral_blood CPT0410410002 CPT0410410002.WholeExome.RP-1303.bam 23108226840 BAM submitted_aligned CPTAC3 f5f139b6-1ad1-4f89-b0f3-6d3ec420c787 4100af9a26238b994c753f4a543bc6a4 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06368.WXS.Tpb.hg38 C3L-06368 AML WXS tumor_peripheral_blood CPT0410410002 bb9ec808-6239-4353-950e-64991f8acfa6_wxs_gdc_realn.bam 32288108727 BAM harmonized CPTAC3 4c8d49db-dfe8-477a-b33d-903a587afed1 b276c55b8b29e3c2b608d5eef5b3aef6 {"aliquot_tag": "ALQ_c17e04d5", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06369.MethArray.Green.Tbm C3L-06369 AML Methylation_Array tumor_bone_marrow CPT0413490002 204930640111_R06C01_Grn.idat 13677960 IDAT Green NA CPTAC3 522a2b24-cc1c-443d-9b16-2a220f253e1f 258a2babf8a5a16df95985d21943720e {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.MethArray.Red.Tbm C3L-06369 AML Methylation_Array tumor_bone_marrow CPT0413490002 204930640111_R06C01_Red.idat 13677960 IDAT Red NA CPTAC3 e073afad-a137-4894-bf4a-f9479cb63425 55798a5fc680b56dce0f2fd9047237cc {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.miRNA-Seq.S30_L005_R1.Tbm C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAGGCG_S30_L005_R1_001.unaln.bam 256246836 BAM S30_L005_R1 submitted_unaligned CPTAC3 35fe6185-a3ca-4b08-8bef-bc1cd2c9e803 43428c20c9ac5ca3532f8c614c9a420f {"aliquot_tag": "ALQ_6aae45d", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.miRNA-Seq.S8_L003_R1.Tbm C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L003_R1_001.unaln.bam 178546103 BAM S8_L003_R1 submitted_unaligned CPTAC3 2dff295d-0f3c-43e7-a8fb-7754dd89cdeb ef4eeeefd93667c9b1f48761527e9def {"aliquot_tag": "ALQ_6aae45d", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.miRNA-Seq.Tbm.hg38 C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 2de7aa7a-fec0-4fb2-a267-e21d1c07f937_mirnaseq_gdc_realn.bam 492243280 BAM harmonized CPTAC3 4e5e0167-0700-4c1a-a059-07939f66453b 6f531c0a7250ad33baa772fc8ffa12de {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.RNA-Seq.chimeric.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.chimeric.gdc_realn.bam 171308726 BAM chimeric harmonized CPTAC3 ef4b4d1f-8171-474b-bef1-4601d77ac646 357219ea0156ed99fe904aaf6502f875 {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.RNA-Seq.genomic.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.genomic.gdc_realn.bam 8169511634 BAM genomic harmonized CPTAC3 d04625b0-1734-4b32-a491-4d827683931e 9d71734568ab20197fdfb5ece5fe51d4 {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.RNA-Seq.S2_L001_R1.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R1_001.fastq.gz 3884976741 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 8912632e-66df-420c-9db6-8a5138fffedd 170ab207cb2a517772a3b80b80e2004e {"aliquot_tag": "ALQ_6aae45d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.RNA-Seq.S2_L001_R2.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R2_001.fastq.gz 4137092013 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 0d4ca071-c2ec-480b-ac31-4f78236b2d52 b3bfbb83b19434241407f650f16df045 {"aliquot_tag": "ALQ_6aae45d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.RNA-Seq.transcriptome.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.transcriptome.gdc_realn.bam 8629812377 BAM transcriptome harmonized CPTAC3 096ade43-5be6-4521-8bc6-a3a4e284702e 7ce57c9c3595bc72ca7fe673715659ed {"aliquot_tag": "ALQ_6aae45d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.WGS.Nbc C3L-06369 AML WGS buccal_normal CPT0413430001 CPT0413430001.WholeGenome.RP-2158.bam 90358839926 BAM submitted_aligned CPTAC3 4b08e6fe-6570-4985-ad1b-4993b6caa2ad 7c0480b4c2ee52b7b8a433343b70ae2a {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06369.WGS.Nbc.hg38 C3L-06369 AML WGS buccal_normal CPT0413430001 1082aa55-703a-44cd-b5c1-ef42b3954cd1_wgs_gdc_realn.bam 494553510166 BAM harmonized CPTAC3 d4778278-deab-47c4-8cad-3ad89a813df0 110aaca0b808def1cdd1863aec7b4b39 {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06369.WGS.Tbm C3L-06369 AML WGS tumor_bone_marrow CPT0413490002 CPT0413490002.WholeGenome.RP-2158.bam 63096923730 BAM submitted_aligned CPTAC3 76d51868-9bc4-4bc0-a627-c844a0da6823 08afcd6e8a7d3c32d8f90e32ef931dda {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.WGS.Tbm.hg38 C3L-06369 AML WGS tumor_bone_marrow CPT0413490002 12154a7c-6e25-40b7-93b5-1654c581800f_wgs_gdc_realn.bam 177220469953 BAM harmonized CPTAC3 d93cf91b-6505-4604-90a9-1ed7919a25f7 c2ac69aa6a22b98ee45a5b95905fb22e {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.WXS.Nbc C3L-06369 AML WXS buccal_normal CPT0413430001 CPT0413430001.WholeExome.RP-1303.bam 21323478910 BAM submitted_aligned CPTAC3 0d5bd0c8-e049-404f-ad52-37f068846c95 d7ab9af2d1532c6a4d7594c011856a69 {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06369.WXS.Nbc.hg38 C3L-06369 AML WXS buccal_normal CPT0413430001 1082aa55-703a-44cd-b5c1-ef42b3954cd1_wxs_gdc_realn.bam 30834556167 BAM harmonized CPTAC3 cfec7a25-deba-47ba-baa1-a98913007129 d9a50acca81e5537b289aaaa459f55ca {"aliquot_tag": "ALQ_135f1c92", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06369.WXS.Tbm C3L-06369 AML WXS tumor_bone_marrow CPT0413490002 CPT0413490002.WholeExome.RP-1303.bam 31546652914 BAM submitted_aligned CPTAC3 a6e83226-bc0a-4f03-b3bc-62b3929a05b8 92eb1b3a33afdb8bc7de2b2b58fb955c {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06369.WXS.Tbm.hg38 C3L-06369 AML WXS tumor_bone_marrow CPT0413490002 12154a7c-6e25-40b7-93b5-1654c581800f_wxs_gdc_realn.bam 43962325870 BAM harmonized CPTAC3 2a646771-d8fc-4833-807f-d3ee0871497a 2bcd1f62fdc3864cc48cc0c5e8c0f100 {"aliquot_tag": "ALQ_c0e65589", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06374.MethArray.Green.Tbm C3L-06374 AML Methylation_Array tumor_bone_marrow CPT0410490002 205555380130_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a9fc2d6b-5f31-4ea5-9d1c-3f2874bf414b 83de0b292257a695f19d1694d8ecc9c2 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.MethArray.Red.Tbm C3L-06374 AML Methylation_Array tumor_bone_marrow CPT0410490002 205555380130_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 d1c39678-a4e4-4c3c-a0c7-57da3db62f18 9e7fa92560f4afde361bce5573d7bd63 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.miRNA-Seq.S26_L005_R1.Tbm C3L-06374 AML miRNA-Seq tumor_bone_marrow CPT0410500002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAACTA_S26_L005_R1_001.unaln.bam 290243249 BAM S26_L005_R1 submitted_unaligned CPTAC3 fefa4d0a-c2a6-4caf-a008-3e4bc479fa4b a72aa2f45ed1e046f2fb705be6b4ed8f {"aliquot_tag": "ALQ_3742fec0", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.miRNA-Seq.Tbm.hg38 C3L-06374 AML miRNA-Seq tumor_bone_marrow CPT0410500002 223ca80a-27ec-4822-9ca4-2ccc964a7db2_mirnaseq_gdc_realn.bam 307626820 BAM harmonized CPTAC3 20e9ca79-b6dd-487c-8ef2-1ba49614f5d4 9e27e22ed921d61561c6a2e508c18ea5 {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.RNA-Seq.chimeric.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.chimeric.gdc_realn.bam 164415708 BAM chimeric harmonized CPTAC3 85c96197-b9c4-4026-9f05-f693cdef6ac4 d660d81c7e62c507c25bc416597b9d7a {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.RNA-Seq.genomic.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.genomic.gdc_realn.bam 7829029834 BAM genomic harmonized CPTAC3 5c1d1201-f2ce-4c4f-9c91-aa488d405f69 5f86b67b1caf4e151a5acd4a0548146e {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.RNA-Seq.S5_L002_R1.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R1_001.fastq.gz 3221254222 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 23a53be6-2568-49b6-9e77-cb0f8b763b6f 072da92e00d69c28841df98b01acdbc6 {"aliquot_tag": "ALQ_3742fec0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.RNA-Seq.S5_L002_R2.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R2_001.fastq.gz 3406264208 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 210f1b92-20ce-4c76-b450-9070622728bd 606f32246f32cd2c48ab0c5373ea1895 {"aliquot_tag": "ALQ_3742fec0", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.RNA-Seq.transcriptome.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.transcriptome.gdc_realn.bam 6452721731 BAM transcriptome harmonized CPTAC3 97ab067e-3c19-4a8d-9272-0278f4b61c91 a81359e8936e5d5b06b73dce4ce308b6 {"aliquot_tag": "ALQ_3742fec0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.WGS.Nbc C3L-06374 AML WGS buccal_normal CPT0410460001 CPT0410460001.WholeGenome.RP-2158.bam 63282359480 BAM submitted_aligned CPTAC3 472cfeef-4a15-4b7b-9686-9d69d263906e 1aeeec8478925dff873903012d8917ef {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06374.WGS.Nbc.hg38 C3L-06374 AML WGS buccal_normal CPT0410460001 2cb5354f-1075-45c3-9267-37753db6669a_wgs_gdc_realn.bam 195481200931 BAM harmonized CPTAC3 1baab9c9-7a4f-40c9-9873-5fa78856e42e d71e2fc2e00ba688f0210c82f92e3a16 {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06374.WGS.Tbm C3L-06374 AML WGS tumor_bone_marrow CPT0410490002 CPT0410490002.WholeGenome.RP-2158.bam 49038355116 BAM submitted_aligned CPTAC3 577bed74-6195-411f-bf24-480919dfd25f 1ab58596cd4da3be567d8099557ce07c {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.WGS.Tbm.hg38 C3L-06374 AML WGS tumor_bone_marrow CPT0410490002 c35ea67c-6c16-44b1-8863-aaeaf66865f5_wgs_gdc_realn.bam 144070968583 BAM harmonized CPTAC3 5a782fa9-d539-48e4-bdea-eee86f280403 16637c53fae8dbc7112f7460cb018366 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.WXS.Nbc C3L-06374 AML WXS buccal_normal CPT0410460001 CPT0410460001.WholeExome.RP-1303.bam 16175292772 BAM submitted_aligned CPTAC3 f99875f0-0ec0-4c4c-aadb-fb4c75b3a7ee 06402203eff5e7b0d8ce255fcfc4cfee {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06374.WXS.Nbc.hg38 C3L-06374 AML WXS buccal_normal CPT0410460001 2cb5354f-1075-45c3-9267-37753db6669a_wxs_gdc_realn.bam 22379237818 BAM harmonized CPTAC3 91de498d-bc4c-4448-a7ec-eda0c295ee08 8ceffed281e095f0e3bd152f4a06071f {"aliquot_tag": "ALQ_ea57897f", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06374.WXS.Tbm C3L-06374 AML WXS tumor_bone_marrow CPT0410490002 CPT0410490002.WholeExome.RP-1303.bam 21485741240 BAM submitted_aligned CPTAC3 1d77d4ec-a6be-4ae2-99e8-e5fde773b0eb 4b0743606f7667c3a3b0eaa035455e92 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06374.WXS.Tbm.hg38 C3L-06374 AML WXS tumor_bone_marrow CPT0410490002 c35ea67c-6c16-44b1-8863-aaeaf66865f5_wxs_gdc_realn.bam 29720041722 BAM harmonized CPTAC3 9904b87f-a661-42a8-ad84-d5d7395609c8 6142f0fc39e63dce5dd96cd5c0165297 {"aliquot_tag": "ALQ_f10e4f14", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06386.MethArray.Green.Tbm C3L-06386 AML Methylation_Array tumor_bone_marrow CPT0410910002 205987770157_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 663418eb-4f58-43a8-8e91-5cef6f495ee0 2875677fd35d948ab0df55aa376d7f94 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06386.MethArray.Red.Tbm C3L-06386 AML Methylation_Array tumor_bone_marrow CPT0410910002 205987770157_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 547a1784-0630-4f52-b4b8-c68dfa9be51b 1d4ff71b9635d27ae411dda848cc9fce {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06386.miRNA-Seq.S10_L003_R1.Tpb C3L-06386 AML miRNA-Seq tumor_peripheral_blood CPT0410940002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L003_R1_001.unaln.bam 264627191 BAM S10_L003_R1 submitted_unaligned CPTAC3 db9724a6-3c51-44aa-a1d3-3923f3538b69 a758fadfea7c7667821ef3a459f8a590 {"aliquot_tag": "ALQ_b500987b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06386.miRNA-Seq.Tpb.hg38 C3L-06386 AML miRNA-Seq tumor_peripheral_blood CPT0410940002 6461073a-bd3f-4f5e-8b0e-dd076f718a89_mirnaseq_gdc_realn.bam 295263291 BAM harmonized CPTAC3 e572c156-0666-44b7-a291-c2bae03ee386 712e5191ddd5b7d291e75c3e6f038c0e {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06386.RNA-Seq.chimeric.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.chimeric.gdc_realn.bam 508901076 BAM chimeric harmonized CPTAC3 86fc3ce6-7eff-4847-99df-744f9c9941fb 3fe1e4b86a87f59d8ba7496afedb5440 {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06386.RNA-Seq.genomic.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.genomic.gdc_realn.bam 7738238602 BAM genomic harmonized CPTAC3 6b8bd0ad-d2c6-464b-b55d-9e69a7bdf993 ab6932db33b0b041e9564e0dd16fcb90 {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06386.RNA-Seq.S29_L008_R1.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R1_001.fastq.gz 3700088810 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 455d60e4-3183-4728-a235-10f3a9e8adf1 3bde5066fd570fce5aa0d18074bff631 {"aliquot_tag": "ALQ_b500987b", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06386.RNA-Seq.S29_L008_R2.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R2_001.fastq.gz 4159174920 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 6934ddbf-b5e2-4486-8c78-acc7e79ad220 9f3b36271dc8fbdff2e29cd4e075702d {"aliquot_tag": "ALQ_b500987b", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06386.RNA-Seq.transcriptome.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.transcriptome.gdc_realn.bam 8401038038 BAM transcriptome harmonized CPTAC3 51d25ba6-46c0-4f81-b89f-51116beed76d b02f50fa91eecac959ce7e5d18e1eb79 {"aliquot_tag": "ALQ_b500987b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06386.WGS.Tbm C3L-06386 AML WGS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeGenome.RP-2158.bam 60724679059 BAM submitted_aligned CPTAC3 db94e33f-628c-485b-9d68-a032ec9f8645 303c4f9249722ef33a74b8b9c1e61dc1 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06386.WGS.Tbm.hg38 C3L-06386 AML WGS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wgs_gdc_realn.bam 179870048993 BAM harmonized CPTAC3 aefacc29-6b93-498b-9181-01aa353cb850 d2860289b2a4eecfa9b302e8464b0886 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06386.WXS.Nbc C3L-06386 AML WXS buccal_normal CPT0410880001 CPT0410880001.WholeExome.RP-1303.bam 24541841088 BAM submitted_aligned CPTAC3 3e172815-ce0f-4c40-9294-d81ddb72b56a 828bab49374b4aeadcff85adea442406 {"aliquot_tag": "ALQ_22a5f765", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06386.WXS.Nbc.hg38 C3L-06386 AML WXS buccal_normal CPT0410880001 c432125d-2453-4449-a6dd-ae35376eb87f_wxs_gdc_realn.bam 34749480704 BAM harmonized CPTAC3 27966373-38a4-4697-8eda-28539d19e5c6 1727d000f969394e9d9037f868a7d107 {"aliquot_tag": "ALQ_22a5f765", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06386.WXS.Tbm C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeExome.RP-1303.bam 30377003817 BAM submitted_aligned CPTAC3 6d231bd0-0b90-45fb-be2e-c250cb554e7c 75c64f3b29c3ec79cd7a50bd96633565 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06386.WXS.Tbm.hg38 C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wxs_gdc_realn.bam 42237742138 BAM harmonized CPTAC3 73f8f70a-98d4-4df8-89f2-596e281d1dc7 36e60a84e228d0dfe7cc5f2222e85c3e {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06534.MethArray.Green.Tbm C3L-06534 AML Methylation_Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6afaf6c3-283a-4238-96e3-efbfa196ea4f ca475f5a1f5644658b12474b91e8a12c {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.MethArray.Red.Tbm C3L-06534 AML Methylation_Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 c8ba1d9e-66d0-4570-a96d-1bf67567e4e4 74e1fdfe870f4c69cfc627d16fee2f9c {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.miRNA-Seq.S49_L008_R1.Tbm C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTAGCT_S49_L008_R1_001.unaln.bam 280032746 BAM S49_L008_R1 submitted_unaligned CPTAC3 a0f1ca8f-7fb4-4b4b-8a7f-1bd43737e2ad 7e11b732e12156a5cbd301fa63a4a7ad {"aliquot_tag": "ALQ_be571300", "sample": "S49", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.miRNA-Seq.Tbm.hg38 C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 67f6f645-44b1-4009-bc83-1246e7ce7e8f_mirnaseq_gdc_realn.bam 294963728 BAM harmonized CPTAC3 4602960c-f086-4ee9-afe0-2a4d1f6af971 a7cd0a4d8d7947af0e92825d12f0abf1 {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.RNA-Seq.chimeric.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.chimeric.gdc_realn.bam 85631606 BAM chimeric harmonized CPTAC3 655685d3-c81d-40ee-b009-11fcbf2f2322 deac35516aa696c6b7381babd466c3f0 {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.RNA-Seq.genomic.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.genomic.gdc_realn.bam 9307738152 BAM genomic harmonized CPTAC3 b773828c-4a01-41d0-8517-f5be2318d319 855437377c21c2e532ad13a8e0b2812f {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.RNA-Seq.S23_L006_R1.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R1_001.fastq.gz 3659338538 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 5c9407bd-fb2c-4630-a594-3fe9336a1fdb cb5a5791aaea4db511a4bbc5eb0e1ca1 {"aliquot_tag": "ALQ_be571300", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.RNA-Seq.S23_L006_R2.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R2_001.fastq.gz 3950808227 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 98809bf4-4138-472c-a8ac-931b6daef006 9e3d51463b7eb1995abc0aba7da41d39 {"aliquot_tag": "ALQ_be571300", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.RNA-Seq.transcriptome.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.transcriptome.gdc_realn.bam 9656059878 BAM transcriptome harmonized CPTAC3 e1630e5d-749e-4fe4-8c10-7df39de4e693 c4b74738ecc729640dcef93736a4334a {"aliquot_tag": "ALQ_be571300", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.WGS.Tbm C3L-06534 AML WGS tumor_bone_marrow CPT0357310002 CPT0357310002.WholeGenome.RP-2158.bam 53750296037 BAM submitted_aligned CPTAC3 5f68c355-8c93-4d53-8508-c01ad7359159 10a2af2f5309a4b665b36b7376a3774e {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.WGS.Tbm.hg38 C3L-06534 AML WGS tumor_bone_marrow CPT0357310002 85fc96f8-1da0-4cc7-a2ee-a4a2b22d9dbd_wgs_gdc_realn.bam 160838961740 BAM harmonized CPTAC3 09add0e5-3e23-400f-83a9-4cb0530fd69a d1e07e6f3128b568c71856eeb1e82b1f {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.WXS.Tbm C3L-06534 AML WXS tumor_bone_marrow CPT0357310002 CPT0357310002.WholeExome.RP-1303.bam 22734389925 BAM submitted_aligned CPTAC3 b69d8593-791e-49ea-be41-4c59acdf3201 8cee1e4afee2989c35ddb619c1fa6382 {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06534.WXS.Tbm.hg38 C3L-06534 AML WXS tumor_bone_marrow CPT0357310002 85fc96f8-1da0-4cc7-a2ee-a4a2b22d9dbd_wxs_gdc_realn.bam 32181243333 BAM harmonized CPTAC3 30238c46-4635-4f2b-a172-aba09fac1872 43abe3d902d15776b71a3c1d53c95517 {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06536.MethArray.Green.Tbm C3L-06536 AML Methylation_Array tumor_bone_marrow CPT0357520002 205555390118_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4095dc5a-17f6-4344-80c9-15782116dd22 11f727449bd1fbce40c0adb46ec55033 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.MethArray.Red.Tbm C3L-06536 AML Methylation_Array tumor_bone_marrow CPT0357520002 205555390118_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 095f7cc1-e2ab-45e5-ab38-eee1efa59222 7b76cbd44c513b93f28f4e6850e8a3a0 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.miRNA-Seq.S50_L008_R1.Tbm C3L-06536 AML miRNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTATAC_S50_L008_R1_001.unaln.bam 205710341 BAM S50_L008_R1 submitted_unaligned CPTAC3 220c605b-1a19-4ac0-96e5-f368b9a3653a fde634bd078d3d506915cab62899dbc4 {"aliquot_tag": "ALQ_556ed9ad", "sample": "S50", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.miRNA-Seq.Tbm.hg38 C3L-06536 AML miRNA-Seq tumor_bone_marrow CPT0357530002 b4adf0b5-8a23-420d-9d51-0af7e28a6e38_mirnaseq_gdc_realn.bam 221516565 BAM harmonized CPTAC3 cb883ad8-5e32-4051-87ac-ee5fc30819c0 f5e2d68713c954990029a39e50c3cf13 {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.RNA-Seq.chimeric.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.chimeric.gdc_realn.bam 79895908 BAM chimeric harmonized CPTAC3 4500abf3-82b9-4262-aa6a-f708a4febf6d e60ece5ac1db7cf3fce2cb400e1a7ee1 {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.RNA-Seq.genomic.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.genomic.gdc_realn.bam 6448098497 BAM genomic harmonized CPTAC3 9c7b4d69-e8c0-4fbb-8aa7-85c14730d5d6 126c464fdf80adf5bc40e4b94dff073b {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.RNA-Seq.S22_L006_R1.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R1_001.fastq.gz 3216958952 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 2f8b0a00-f2c6-45b7-a639-638866d2f1df 22ad3c5788cdbb3de82941ed5bfc4880 {"aliquot_tag": "ALQ_556ed9ad", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.RNA-Seq.S22_L006_R2.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R2_001.fastq.gz 3504158568 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 57ee0236-540a-4ee1-988d-31a66667aa68 1095fe9da4fa5376a619a94d8212c15a {"aliquot_tag": "ALQ_556ed9ad", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.RNA-Seq.transcriptome.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.transcriptome.gdc_realn.bam 9774112709 BAM transcriptome harmonized CPTAC3 d5ea0534-0d1a-4f91-9f32-0fb7562e9269 d53dfa2bf4f5e9eb45fc38329080aeec {"aliquot_tag": "ALQ_556ed9ad", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.WGS.Nbc C3L-06536 AML WGS buccal_normal CPT0357490003 CPT0357490003.WholeGenome.RP-2158.bam 38595068533 BAM submitted_aligned CPTAC3 965bd8f8-64ed-4823-9ee7-80134f7c937d c69a121fe59be9f34b4da5c4a2416f2f {"aliquot_tag": "ALQ_a385223f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06536.WGS.Nbc.hg38 C3L-06536 AML WGS buccal_normal CPT0357490003 b5886ef8-aaae-46f8-9765-0aa2e77030ca_wgs_gdc_realn.bam 124125820790 BAM harmonized CPTAC3 d3eb1159-4ed5-4b4b-afc7-3121c141a45f 2747a94556661f7205e3634d6f7ad211 {"aliquot_tag": "ALQ_a385223f", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06536.WGS.Tbm C3L-06536 AML WGS tumor_bone_marrow CPT0357520002 CPT0357520002.WholeGenome.RP-2158.bam 45366010648 BAM submitted_aligned CPTAC3 6fef3dbc-be48-464d-8939-75bb841f4559 ff679e73639ab3c428e70d54a73096c4 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.WGS.Tbm.hg38 C3L-06536 AML WGS tumor_bone_marrow CPT0357520002 e5315cdd-85a2-425b-a51a-52ed0cbc72f3_wgs_gdc_realn.bam 136256114453 BAM harmonized CPTAC3 0819a42c-0ec4-4c56-9085-a5cefa866e5c c47d7177c8da4e5c3dbe81ac16702c8c {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.WXS.Tbm C3L-06536 AML WXS tumor_bone_marrow CPT0357520002 CPT0357520002.WholeExome.RP-1303.bam 27270072547 BAM submitted_aligned CPTAC3 70a73be2-0f69-4186-a265-f5d2441aff41 15b17281b75febfb25f7271cf3219460 {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06536.WXS.Tbm.hg38 C3L-06536 AML WXS tumor_bone_marrow CPT0357520002 e5315cdd-85a2-425b-a51a-52ed0cbc72f3_wxs_gdc_realn.bam 38101929396 BAM harmonized CPTAC3 14fea685-7711-45e1-a4b0-462f06a63860 16b428d64c1e6bd7f9ddac8551bc21cf {"aliquot_tag": "ALQ_680ef01d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06537.MethArray.Green.Tbm C3L-06537 AML Methylation_Array tumor_bone_marrow CPT0357600002 205555390128_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6dbd8d4d-09cb-4552-af58-798afeb90ac6 d8568cd7d435098ce7d37d092a47719f {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.MethArray.Red.Tbm C3L-06537 AML Methylation_Array tumor_bone_marrow CPT0357600002 205555390128_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 6f5c89d7-28e1-497b-8cae-1998f8cede70 adf007a03117ab050254e38ae6c2e892 {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.miRNA-Seq.S51_L008_R1.Tbm C3L-06537 AML miRNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTCAGA_S51_L008_R1_001.unaln.bam 243110226 BAM S51_L008_R1 submitted_unaligned CPTAC3 66e5db0d-c4c2-4d9c-a04a-e9e4294c9068 45a48671d1a8317797e86261851e19f0 {"aliquot_tag": "ALQ_a93af863", "sample": "S51", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.miRNA-Seq.Tbm.hg38 C3L-06537 AML miRNA-Seq tumor_bone_marrow CPT0357610002 24ec0784-5b22-4bb0-9b01-6be10f455729_mirnaseq_gdc_realn.bam 256901843 BAM harmonized CPTAC3 31c070e5-1596-47b1-be93-a699ec366665 49169d3b9a1b171a768d18b6ed50845a {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.RNA-Seq.chimeric.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.chimeric.gdc_realn.bam 307773523 BAM chimeric harmonized CPTAC3 20ed2a26-a874-41a8-b2d1-165583591d6c f24e469693dd21a752eea23d1b11c106 {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.RNA-Seq.genomic.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.genomic.gdc_realn.bam 10325895462 BAM genomic harmonized CPTAC3 2065bc0b-232d-4535-ad21-dbf6c0db6c03 dc767e4e8afdfdbe6f7ea94176e1ede7 {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.RNA-Seq.S24_L006_R1.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 5177540250 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 2129002c-5336-4aae-b19a-72c5e3c4f60b 7457178440554d3e3e74220364a6db7e {"aliquot_tag": "ALQ_a93af863", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.RNA-Seq.S24_L006_R2.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 5767583082 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 8aaf31b8-a585-404c-aefa-a839c42b44b8 d8e0183011ddc25c8ef566d54d47a427 {"aliquot_tag": "ALQ_a93af863", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.RNA-Seq.transcriptome.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.transcriptome.gdc_realn.bam 12867965818 BAM transcriptome harmonized CPTAC3 34874eb9-d754-4924-ba70-4aaecac46aa1 42a542271101ae2127095e4e01411ddd {"aliquot_tag": "ALQ_a93af863", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.WGS.Nbc C3L-06537 AML WGS buccal_normal CPT0357570003 CPT0357570003.WholeGenome.RP-2158.bam 53170185799 BAM submitted_aligned CPTAC3 c7a19452-d0bd-4113-a350-2aea099c0905 b4f31cf3bffc260ca54eea07e38da87b {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06537.WGS.Nbc.hg38 C3L-06537 AML WGS buccal_normal CPT0357570003 dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wgs_gdc_realn.bam 158430213572 BAM harmonized CPTAC3 64b40dfd-471f-4fa3-bd24-f9ea433e8283 9a56faf5a5941cdb923b4a5cde6d93db {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06537.WGS.Tbm C3L-06537 AML WGS tumor_bone_marrow CPT0357600002 CPT0357600002.WholeGenome.RP-2158.bam 65633893943 BAM submitted_aligned CPTAC3 d76bdcd3-0229-439f-823c-68f2d357b111 834b1ede08be9cd4657ff61156742b82 {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.WGS.Tbm.hg38 C3L-06537 AML WGS tumor_bone_marrow CPT0357600002 e3e078d4-2998-4ded-b84e-9f6f734dde64_wgs_gdc_realn.bam 193442780818 BAM harmonized CPTAC3 047b861d-0027-4d8e-94a9-319d18db7b84 bdf3901945217e83f99fc78d3916e346 {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.WXS.Nbc C3L-06537 AML WXS buccal_normal CPT0357570003 CPT0357570003.WholeExome.RP-1303.bam 20522026084 BAM submitted_aligned CPTAC3 c30f388f-a058-402a-a2e7-3b41c92bd564 bf6e76026ed7998f399947d7e4d4da5b {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06537.WXS.Nbc.hg38 C3L-06537 AML WXS buccal_normal CPT0357570003 dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wxs_gdc_realn.bam 28360021924 BAM harmonized CPTAC3 0003d0ca-9bcb-4dab-ad58-eb99f626d24f 2f0b4e7003c739fb41e0884241170ed0 {"aliquot_tag": "ALQ_d7e94ffb", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06537.WXS.Tbm C3L-06537 AML WXS tumor_bone_marrow CPT0357600002 CPT0357600002.WholeExome.RP-1303.bam 20157290364 BAM submitted_aligned CPTAC3 420a03fc-b71e-4199-90d9-cbd3a7ea598f d3f97bac054e7147c3690e6a96e2d38e {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06537.WXS.Tbm.hg38 C3L-06537 AML WXS tumor_bone_marrow CPT0357600002 e3e078d4-2998-4ded-b84e-9f6f734dde64_wxs_gdc_realn.bam 27641043839 BAM harmonized CPTAC3 2938b8d2-b043-43cb-a92b-06cb22cdc57c ebea9d39cb106ce2b5661569fdeddfaf {"aliquot_tag": "ALQ_945ad1d3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06538.MethArray.Green.Tbm C3L-06538 AML Methylation_Array tumor_bone_marrow CPT0357740002 205555380130_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4a78766c-42fe-4614-8c61-5a69665117b2 a87a73d76a5a577012d851d81bd0dc98 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.MethArray.Red.Tbm C3L-06538 AML Methylation_Array tumor_bone_marrow CPT0357740002 205555380130_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 f1e6878f-0156-488a-881f-27e32879156a 84e8f5d0ae7aab7976938e3274644c59 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.miRNA-Seq.S52_L008_R1.Tbm C3L-06538 AML miRNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC31-K00269_0297_AHKCFKBBXY_GACGAC_S52_L008_R1_001.unaln.bam 181417181 BAM S52_L008_R1 submitted_unaligned CPTAC3 2011bc05-070a-4543-8d70-4684e9d13cf3 b0c9b2e1c00e2d4fa70b10b1a9f8091d {"aliquot_tag": "ALQ_97e68d06", "sample": "S52", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06538.miRNA-Seq.Tbm.hg38 C3L-06538 AML miRNA-Seq tumor_bone_marrow CPT0357750002 07543901-ad32-43ab-9a16-3b87b286d262_mirnaseq_gdc_realn.bam 192811006 BAM harmonized CPTAC3 155507e2-bdcf-406b-9371-125f4f9dd331 2c44107fdbfedd999fc104fb28876c52 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06538.RNA-Seq.chimeric.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.chimeric.gdc_realn.bam 124248716 BAM chimeric harmonized CPTAC3 7f7cbd83-4ade-4bd9-bce6-db3781d2897c 6f4a1a136494ded8c9148cfa19501aa9 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.RNA-Seq.genomic.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.genomic.gdc_realn.bam 8648220570 BAM genomic harmonized CPTAC3 59b21a63-9328-491d-b69b-d372e653712e 8f7f95a3e5e4b285bebc45304b24d424 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.RNA-Seq.S20_L005_R1.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R1_001.fastq.gz 4294397149 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 79f72bd1-ecb8-4efb-b830-f14ec5f1360d 33c0b85232c3dac72b74061204856ae2 {"aliquot_tag": "ALQ_97e68d06", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06538.RNA-Seq.S20_L005_R2.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R2_001.fastq.gz 4723013354 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 680eb667-6251-4746-b73d-cebe3c1282f9 b2bf9e3aee9f4b6e9898b1080e98c820 {"aliquot_tag": "ALQ_97e68d06", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06538.RNA-Seq.transcriptome.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.transcriptome.gdc_realn.bam 10271652180 BAM transcriptome harmonized CPTAC3 0eb97744-49ea-473d-a925-782349f22980 db0bf8385d6dddca89b852e04f348255 {"aliquot_tag": "ALQ_97e68d06", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.WGS.Tbm C3L-06538 AML WGS tumor_bone_marrow CPT0357740002 CPT0357740002.WholeGenome.RP-2158.bam 56652968810 BAM submitted_aligned CPTAC3 21913514-e444-4369-aafb-095e4635643e a8241492a7b029916da1f29249259aa4 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.WGS.Tbm.hg38 C3L-06538 AML WGS tumor_bone_marrow CPT0357740002 b4e42d84-7c26-4168-a50d-4fc484c2d5b8_wgs_gdc_realn.bam 161085922717 BAM harmonized CPTAC3 019001be-a94d-4d17-b21e-6bb37f28270d 795e09b7974ec2ac93863a8d43be732b {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.WXS.Nbc C3L-06538 AML WXS buccal_normal CPT0357710003 CPT0357710003.WholeExome.RP-1303.bam 29015711918 BAM submitted_aligned CPTAC3 71eb4838-3584-4fdb-9e69-68fbb9ce0f58 17bc1014d34c6ee589f72c030f250a19 {"aliquot_tag": "ALQ_15611b50", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06538.WXS.Nbc.hg38 C3L-06538 AML WXS buccal_normal CPT0357710003 68e81fcd-1c9d-4f62-a6ad-9b624865181c_wxs_gdc_realn.bam 39922875366 BAM harmonized CPTAC3 bc427657-d229-491c-9683-14a1a522b955 2bffd4ab07025dee993849e24a3beb4d {"aliquot_tag": "ALQ_15611b50", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06538.WXS.Tbm C3L-06538 AML WXS tumor_bone_marrow CPT0357740002 CPT0357740002.WholeExome.RP-1303.bam 23871267637 BAM submitted_aligned CPTAC3 2bcb5508-b0fe-45d5-bf9d-2390572f24f3 158eefbf2eb2028523e6adf9bb6601e4 {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06538.WXS.Tbm.hg38 C3L-06538 AML WXS tumor_bone_marrow CPT0357740002 b4e42d84-7c26-4168-a50d-4fc484c2d5b8_wxs_gdc_realn.bam 34029612018 BAM harmonized CPTAC3 8acdf3ea-77e9-446c-9d18-55cbea9f94fc d022ebe143a45c3d2255cb6cee177faa {"aliquot_tag": "ALQ_aa86a4b6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06539.MethArray.Green.Tbm C3L-06539 AML Methylation_Array tumor_bone_marrow CPT0357830002 205555390119_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0c490b67-49ae-4016-b6ae-65a83aa52894 846bc21d160d0384ea8885d89ecfa3a2 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.MethArray.Red.Tbm C3L-06539 AML Methylation_Array tumor_bone_marrow CPT0357830002 205555390119_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 cd221f3e-c494-433d-afa6-94bd9a4465e6 6d85a31487906caf758789f13ab9b7f7 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.miRNA-Seq.S55_L008_R1.Tbm C3L-06539 AML miRNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC31-K00269_0297_AHKCFKBBXY_TAATCG_S55_L008_R1_001.unaln.bam 321978087 BAM S55_L008_R1 submitted_unaligned CPTAC3 f26b1f46-c7e1-458a-b0a7-a36277549c81 683fdf7f75270927957b945ba284975f {"aliquot_tag": "ALQ_5bd01663", "sample": "S55", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.miRNA-Seq.Tbm.hg38 C3L-06539 AML miRNA-Seq tumor_bone_marrow CPT0357840002 3a4a5c39-8e58-4e83-b7da-c9c91598b690_mirnaseq_gdc_realn.bam 336183832 BAM harmonized CPTAC3 307c03fc-a418-416a-9c57-459b75b15c66 244c75857d2957fd94b58793b0cfa669 {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.RNA-Seq.chimeric.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.chimeric.gdc_realn.bam 108920325 BAM chimeric harmonized CPTAC3 424c8221-c5ed-4e68-a958-88460147dfd2 0b49f4e8b45d72aaf2bb4675b9ecc07e {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.RNA-Seq.genomic.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.genomic.gdc_realn.bam 8259301597 BAM genomic harmonized CPTAC3 28dd782b-f300-47ba-998e-bf798a37f289 682e2efc23c9099b427e042bbfa7c434 {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.RNA-Seq.S18_L005_R1.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R1_001.fastq.gz 4124506299 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 3dad273f-fe63-445a-b5d4-68775e31b1ad af044fba3e425eb795551e3278d68bc1 {"aliquot_tag": "ALQ_5bd01663", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.RNA-Seq.S18_L005_R2.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R2_001.fastq.gz 4580821309 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 d7eb624c-5723-4c25-8228-f7cd7a9423c9 df3a764db0ee062fb9a91cbeadcce072 {"aliquot_tag": "ALQ_5bd01663", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.RNA-Seq.transcriptome.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.transcriptome.gdc_realn.bam 14636869814 BAM transcriptome harmonized CPTAC3 e43e5050-8965-4989-8bd3-9f183e94cd24 041afd1a53c30cfcdf152ee514c93f93 {"aliquot_tag": "ALQ_5bd01663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.WGS.Nbc C3L-06539 AML WGS buccal_normal CPT0357800003 CPT0357800003.WholeGenome.RP-2158.bam 50605679650 BAM submitted_aligned CPTAC3 77136785-4819-4027-b1f8-90dd54a5a823 ee223a60c6138f0f4ff3cc0f1fee9c5a {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06539.WGS.Nbc.hg38 C3L-06539 AML WGS buccal_normal CPT0357800003 e0e01c9d-f823-409e-b875-2d75dc1a577a_wgs_gdc_realn.bam 154159485616 BAM harmonized CPTAC3 472f4c29-feee-4101-9f40-24a10a33bcc3 d0619dab45d78164ab2aae0f242fea1d {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06539.WGS.Tbm C3L-06539 AML WGS tumor_bone_marrow CPT0357830002 CPT0357830002.WholeGenome.RP-2158.bam 59648893962 BAM submitted_aligned CPTAC3 a4210eb4-62bf-4be4-8d98-ca58ad0553bf 09be0ade4bfbd00be204fd5bca98b74a {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.WGS.Tbm.hg38 C3L-06539 AML WGS tumor_bone_marrow CPT0357830002 c9f7d842-f01a-4b20-918a-85ca0baa9b60_wgs_gdc_realn.bam 176935203531 BAM harmonized CPTAC3 eb708ee8-4b29-4e9c-b714-fe5c077a60e7 17249f18fe843074d11ed64ebb2d7620 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.WXS.Nbc C3L-06539 AML WXS buccal_normal CPT0357800003 CPT0357800003.WholeExome.RP-1303.bam 27872661700 BAM submitted_aligned CPTAC3 20a69353-7124-4b35-b0f7-d29126f520e5 7153e8cc8c5d0f03f188892552a2ddba {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06539.WXS.Nbc.hg38 C3L-06539 AML WXS buccal_normal CPT0357800003 e0e01c9d-f823-409e-b875-2d75dc1a577a_wxs_gdc_realn.bam 38284612628 BAM harmonized CPTAC3 233aa0b4-a8bc-4fce-9747-82c617215b27 c71529c7286a8e1c7dd0c78f3b091415 {"aliquot_tag": "ALQ_d9578035", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06539.WXS.Tbm C3L-06539 AML WXS tumor_bone_marrow CPT0357830002 CPT0357830002.WholeExome.RP-1303.bam 21263665121 BAM submitted_aligned CPTAC3 24a320a7-9fef-47e4-9082-c35d5751fa06 5f220383f4d114916e0045232c1a98c3 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06539.WXS.Tbm.hg38 C3L-06539 AML WXS tumor_bone_marrow CPT0357830002 c9f7d842-f01a-4b20-918a-85ca0baa9b60_wxs_gdc_realn.bam 29737850465 BAM harmonized CPTAC3 a9f44528-f082-421c-a615-9a5c558d6c69 6f8993b3602c3488de323c5464470161 {"aliquot_tag": "ALQ_e9f0ca73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06540.MethArray.Green.Tbm C3L-06540 AML Methylation_Array tumor_bone_marrow CPT0357910002 205555380155_R03C01_Grn.idat 13677956 IDAT Green NA CPTAC3 da73ccad-3cb9-470b-adaf-31e76c0e11b2 e94b1c7fc0233fb9be5c85b3daf648ad {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.MethArray.Red.Tbm C3L-06540 AML Methylation_Array tumor_bone_marrow CPT0357910002 205555380155_R03C01_Red.idat 13677956 IDAT Red NA CPTAC3 74c866c7-235d-4bb6-9ccd-0a8edfbb7b27 58127a4fb9b7c62904187c87f1cbf68f {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.miRNA-Seq.S26_L007_R1.Tbm C3L-06540 AML miRNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC31-K00269_0297_AHKCFKBBXY_TACAGC_S26_L007_R1_001.unaln.bam 311359715 BAM S26_L007_R1 submitted_unaligned CPTAC3 76a11898-8762-4bd1-bb3c-29a62e136a50 c94a7e567b34901cd47f653f7bcd1a24 {"aliquot_tag": "ALQ_1fcc3066", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.miRNA-Seq.Tbm.hg38 C3L-06540 AML miRNA-Seq tumor_bone_marrow CPT0357920002 85dc60e9-b46d-4ecb-a2e3-62235ff48021_mirnaseq_gdc_realn.bam 327276933 BAM harmonized CPTAC3 ad084fa7-052b-4ee3-971c-c970c3cdcc86 962c8018e2f0323d85b55c31a39d4cfa {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.RNA-Seq.chimeric.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.chimeric.gdc_realn.bam 53026256 BAM chimeric harmonized CPTAC3 ed0bd558-3119-42a9-95ac-bcd2dc329756 7689302ffa432146941e26ecec0aeca5 {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.RNA-Seq.genomic.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.genomic.gdc_realn.bam 7702628816 BAM genomic harmonized CPTAC3 51297306-22f3-420c-990b-847b0faba61d ca6331f2ae918178cb0e212c2f81fa05 {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.RNA-Seq.S19_L005_R1.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R1_001.fastq.gz 3899033724 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 e3dca2c2-f50b-4088-924c-d1006c1c1bc4 4e28c7fe2fd9efc9b005ed4001e041de {"aliquot_tag": "ALQ_1fcc3066", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.RNA-Seq.S19_L005_R2.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R2_001.fastq.gz 4235744355 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 240d81cf-3707-4eac-b01e-c66dd53b52dc a4599bb9f99f778b7bb026d276405c74 {"aliquot_tag": "ALQ_1fcc3066", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.RNA-Seq.transcriptome.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.transcriptome.gdc_realn.bam 11265263511 BAM transcriptome harmonized CPTAC3 7064de39-d656-46b8-ae76-787462e25709 aec9ff5d6e390d5bc7aab45e4bed1eb6 {"aliquot_tag": "ALQ_1fcc3066", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.WGS.Nbc C3L-06540 AML WGS buccal_normal CPT0357880003 CPT0357880003.WholeGenome.RP-2158.bam 63113829657 BAM submitted_aligned CPTAC3 a3960b51-54b0-4daf-94d6-f22ecbda6535 ee3ef7154576bb16abc85f69e875a446 {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06540.WGS.Nbc.hg38 C3L-06540 AML WGS buccal_normal CPT0357880003 09b7b818-7c8d-41db-b8a2-1b1713603adc_wgs_gdc_realn.bam 185987353424 BAM harmonized CPTAC3 14818528-82a8-4d2c-bf3f-b4eafb4e3c5c 3fbdf9c0b76186a68940752229e7851f {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06540.WGS.Tbm C3L-06540 AML WGS tumor_bone_marrow CPT0357910002 CPT0357910002.WholeGenome.RP-2158.bam 59101287043 BAM submitted_aligned CPTAC3 058b59e4-e2b9-4167-924e-ed4f5c8be657 288c9eeed554ab224cbb01b0a529c1b3 {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.WGS.Tbm.hg38 C3L-06540 AML WGS tumor_bone_marrow CPT0357910002 8398b90d-3648-401d-a664-6a9c44fca60b_wgs_gdc_realn.bam 174412892546 BAM harmonized CPTAC3 6b58e6f7-133e-46d2-a78b-6d28408c9d3a 0efaea94a271e73e5e5e905fc05f242e {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.WXS.Nbc C3L-06540 AML WXS buccal_normal CPT0357880003 CPT0357880003.WholeExome.RP-1303.bam 21607827917 BAM submitted_aligned CPTAC3 faf626de-a4c3-4ca8-b557-5dda9012609c 2f5d0c4ec96313920fbb598e77d0d29b {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06540.WXS.Nbc.hg38 C3L-06540 AML WXS buccal_normal CPT0357880003 09b7b818-7c8d-41db-b8a2-1b1713603adc_wxs_gdc_realn.bam 30002321666 BAM harmonized CPTAC3 7df2ff58-1123-4d05-99b0-93f8348bc66b 2b8cac1776631f253a0f4245e5ce27a6 {"aliquot_tag": "ALQ_e927cbf4", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06540.WXS.Tbm C3L-06540 AML WXS tumor_bone_marrow CPT0357910002 CPT0357910002.WholeExome.RP-1303.bam 20816620315 BAM submitted_aligned CPTAC3 169af22a-4478-43ec-b79b-867a5dfcbaf7 2bb1974f0ad32d8fb6de54dcd91efad0 {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06540.WXS.Tbm.hg38 C3L-06540 AML WXS tumor_bone_marrow CPT0357910002 8398b90d-3648-401d-a664-6a9c44fca60b_wxs_gdc_realn.bam 28716271335 BAM harmonized CPTAC3 c28a8145-36cf-4211-9eec-fcfbac21dcc1 56ca93def48d0d3f17e7702ebb757bab {"aliquot_tag": "ALQ_586c4ab6", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06541.MethArray.Green.Tbm C3L-06541 AML Methylation_Array tumor_bone_marrow CPT0358050001 204930640111_R04C01_Grn.idat 13677958 IDAT Green NA CPTAC3 3813b0da-228b-492a-ac51-bc5e93f09240 6d324693c977b10987dd42a0213c5c08 {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.MethArray.Red.Tbm C3L-06541 AML Methylation_Array tumor_bone_marrow CPT0358050001 204930640111_R04C01_Red.idat 13677958 IDAT Red NA CPTAC3 43a551f1-99f7-4415-a944-bac1c9deedde 50eaf593185936331f3e39d12c6e69b6 {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.miRNA-Seq.S20_L001_R1.Tbm C3L-06541 AML miRNA-Seq tumor_bone_marrow CPT0358060002 210702_UNC32-K00270_0289_AHKJ22BBXY_TGACCA_S20_L001_R1_001.unaln.bam 243155209 BAM S20_L001_R1 submitted_unaligned CPTAC3 26f9f7b4-ab6d-4a0c-b8f5-24daaa06a1a1 09b54a3f1094293a61c7150b2af5cc12 {"aliquot_tag": "ALQ_3b0bb787", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.miRNA-Seq.Tbm.hg38 C3L-06541 AML miRNA-Seq tumor_bone_marrow CPT0358060002 971c224d-b392-40f9-bd5e-e36b6a82c440_mirnaseq_gdc_realn.bam 264943276 BAM harmonized CPTAC3 625f22db-bb65-42dd-b39a-c13bfa9f21f4 a7c5462ec88f46273dbbf12fb7c225b2 {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.RNA-Seq.chimeric.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.chimeric.gdc_realn.bam 50165203 BAM chimeric harmonized CPTAC3 5dff3a60-1507-4038-8e36-f333afcc4790 da27752e7d9d6d44509008970eeaed5c {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.RNA-Seq.genomic.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.genomic.gdc_realn.bam 8047262491 BAM genomic harmonized CPTAC3 169081e7-bf5a-421d-beb5-df4dc4fd8ea6 543199fefa00fba566aa9b8531eaf3bc {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.RNA-Seq.S64_L008_R1.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R1_001.fastq.gz 3742877243 FASTQ S64_L008_R1 submitted_unaligned CPTAC3 59d3d48b-d378-408b-9065-b5140f3209e5 fbc7e9e3ee70d34db4a9caa1a2a8d5e0 {"aliquot_tag": "ALQ_3b0bb787", "sample": "S64", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06541.RNA-Seq.S64_L008_R2.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R2_001.fastq.gz 4397325711 FASTQ S64_L008_R2 submitted_unaligned CPTAC3 5636c15e-e465-415d-ad12-6e6240adb9e0 8e41d5eafa56dc21b0e7d2c53437037a {"aliquot_tag": "ALQ_3b0bb787", "sample": "S64", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06541.RNA-Seq.transcriptome.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.transcriptome.gdc_realn.bam 8457774850 BAM transcriptome harmonized CPTAC3 251c1b12-2621-4ba3-8f85-1d1278fca162 9078f7b04af58fde5d36a3a5fd0c5834 {"aliquot_tag": "ALQ_3b0bb787", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.WGS.Nbc C3L-06541 AML WGS buccal_normal CPT0358030001 CPT0358030001.WholeGenome.RP-2158.bam 48541737139 BAM submitted_aligned CPTAC3 2d0020b5-e323-4dd9-882d-5ba6379cdeb5 73c18710e063db2228ad3b35398c89fc {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06541.WGS.Nbc.hg38 C3L-06541 AML WGS buccal_normal CPT0358030001 75b3a564-3ce9-482a-8cd6-034484dd5465_wgs_gdc_realn.bam 150355441830 BAM harmonized CPTAC3 353c9734-73ad-4bed-86b7-524c2d79a4b5 184dcf20f6213ddf61da194d8ccbd105 {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06541.WGS.Tbm C3L-06541 AML WGS tumor_bone_marrow CPT0358050001 CPT0358050001.WholeGenome.RP-2158.bam 61518904025 BAM submitted_aligned CPTAC3 12f1cfe0-f0c3-4c54-8edd-bb44328c2609 430041d5f31b4b50385d70956be057a1 {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.WGS.Tbm.hg38 C3L-06541 AML WGS tumor_bone_marrow CPT0358050001 0356d6af-f2ae-47df-a012-ac06b249fbae_wgs_gdc_realn.bam 110319964037 BAM harmonized CPTAC3 0d821410-5bac-4cc3-acbe-95fcda1364ea f4997590635920f3c1363e5ad007c99a {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.WXS.Nbc C3L-06541 AML WXS buccal_normal CPT0358030001 CPT0358030001.WholeExome.RP-1303.bam 17435113533 BAM submitted_aligned CPTAC3 bf7fe806-cb3d-41f6-a396-57cb824ec7c3 ad9530e68b8518d370d5ee4ef1b1ca55 {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06541.WXS.Nbc.hg38 C3L-06541 AML WXS buccal_normal CPT0358030001 75b3a564-3ce9-482a-8cd6-034484dd5465_wxs_gdc_realn.bam 24375964003 BAM harmonized CPTAC3 db057121-e94c-4c5c-8c74-c9a5aff26b13 0a72ee084c01ae28bbe66c3f67354f0f {"aliquot_tag": "ALQ_6ae2694d", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06541.WXS.Tbm C3L-06541 AML WXS tumor_bone_marrow CPT0358050001 CPT0358050001.WholeExome.RP-1303.bam 32199715186 BAM submitted_aligned CPTAC3 a19496ef-9892-43b2-bdbc-9ef3858742d2 d3821e0a39e3f30498cdbc78ca8d09dc {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06541.WXS.Tbm.hg38 C3L-06541 AML WXS tumor_bone_marrow CPT0358050001 0356d6af-f2ae-47df-a012-ac06b249fbae_wxs_gdc_realn.bam 43859816354 BAM harmonized CPTAC3 41fa4fe8-db99-499d-958d-1f8ab3d17427 995484a870887d8cf45ddd47e5c7ad0c {"aliquot_tag": "ALQ_e5a29ced", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06542.MethArray.Green.Tbm C3L-06542 AML Methylation_Array tumor_bone_marrow CPT0358190002 205555380136_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 df50b7a1-e440-428f-8061-0f57b559f295 cb9ae96ef81d3c03b2f45c38ce39ecdf {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.MethArray.Red.Tbm C3L-06542 AML Methylation_Array tumor_bone_marrow CPT0358190002 205555380136_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 2bfa8168-58a9-4ece-aad7-a50c2ed02447 e6c7820a85a4d63fdb6bed142efb233b {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.miRNA-Seq.S28_L007_R1.Tbm C3L-06542 AML miRNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC31-K00269_0297_AHKCFKBBXY_TATAAT_S28_L007_R1_001.unaln.bam 318543067 BAM S28_L007_R1 submitted_unaligned CPTAC3 aa3270a3-05e5-4d18-bdc0-0b386c34315b 2e2ada2b0639524ddef33640f109db45 {"aliquot_tag": "ALQ_f983e32c", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.miRNA-Seq.Tbm.hg38 C3L-06542 AML miRNA-Seq tumor_bone_marrow CPT0358200002 e5c854e8-6602-40b3-9d97-695c8d9ce7be_mirnaseq_gdc_realn.bam 336980603 BAM harmonized CPTAC3 708395af-3bcb-4730-8632-0f0d177ae47d 3d37b2a7ca293bb586c7f9cccf51fcf6 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.RNA-Seq.chimeric.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.chimeric.gdc_realn.bam 138974763 BAM chimeric harmonized CPTAC3 db048e41-7260-4451-8136-6423a4ecc2d4 3dfb5deed56976866dc8bda5e97c2589 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.RNA-Seq.genomic.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.genomic.gdc_realn.bam 7645693601 BAM genomic harmonized CPTAC3 56c150c2-4022-4ee9-bf16-5031e0ffec55 27b4db52611264165c99e935687adf45 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.RNA-Seq.S17_L005_R1.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R1_001.fastq.gz 3878804047 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 cc62b62f-c0a1-4ebb-bc4a-d2725f1fe8c6 099b7e29dc73bd171cfe0bef08472ede {"aliquot_tag": "ALQ_f983e32c", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.RNA-Seq.S17_L005_R2.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R2_001.fastq.gz 4225174935 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 e1b044d8-b032-4630-9797-923d831a9915 5e97d4584614cd93688f75e41bf06e35 {"aliquot_tag": "ALQ_f983e32c", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.RNA-Seq.transcriptome.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.transcriptome.gdc_realn.bam 11163186198 BAM transcriptome harmonized CPTAC3 9ef0e1b2-f521-4fbb-9fe5-88f336c1751b b8b5706105ef333d15f27068c4b428c7 {"aliquot_tag": "ALQ_f983e32c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.WGS.Nbc C3L-06542 AML WGS buccal_normal CPT0358160002 CPT0358160002.WholeGenome.RP-2158.bam 42404269304 BAM submitted_aligned CPTAC3 7d5b0c61-cd58-4573-af63-d1d855ab6d2b 770675054789f9d469ee7940886a0cd2 {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06542.WGS.Nbc.hg38 C3L-06542 AML WGS buccal_normal CPT0358160002 1a261104-79db-4f51-8a77-42fe4a12dab2_wgs_gdc_realn.bam 125870394775 BAM harmonized CPTAC3 1835d614-9a70-471e-8179-c103234cb687 70b6cba134aecde7dae721a8b62355fc {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06542.WGS.Tbm C3L-06542 AML WGS tumor_bone_marrow CPT0358190002 CPT0358190002.WholeGenome.RP-2158.bam 53610009979 BAM submitted_aligned CPTAC3 b1e71478-1203-4c23-b27f-69dbafd92170 1f7388d528d22713c48c220504874a86 {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.WGS.Tbm.hg38 C3L-06542 AML WGS tumor_bone_marrow CPT0358190002 6fe2a157-f48e-43fa-806b-4406d5eb94b1_wgs_gdc_realn.bam 153044319610 BAM harmonized CPTAC3 5c5cf68c-fa2b-47ca-968b-88a320d35ac1 71cc653f5d434487442610ec5a95f0ff {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.WXS.Nbc C3L-06542 AML WXS buccal_normal CPT0358160002 CPT0358160002.WholeExome.RP-1303.bam 29178447279 BAM submitted_aligned CPTAC3 8f25df5e-6ab8-4cb8-910c-9c491b659886 e21317f911df88a4f2c210f1d8347d3a {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06542.WXS.Nbc.hg38 C3L-06542 AML WXS buccal_normal CPT0358160002 1a261104-79db-4f51-8a77-42fe4a12dab2_wxs_gdc_realn.bam 41801479896 BAM harmonized CPTAC3 f706c920-c9fa-47e7-b963-85d22687e70b a8d511dfa5be8d0c716cf724d260990f {"aliquot_tag": "ALQ_f0576422", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06542.WXS.Tbm C3L-06542 AML WXS tumor_bone_marrow CPT0358190002 CPT0358190002.WholeExome.RP-1303.bam 21492300088 BAM submitted_aligned CPTAC3 b8c89fcb-8db1-4310-8086-d233e51bfc8e b832419abb7fd53f3271219976eb679c {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06542.WXS.Tbm.hg38 C3L-06542 AML WXS tumor_bone_marrow CPT0358190002 6fe2a157-f48e-43fa-806b-4406d5eb94b1_wxs_gdc_realn.bam 29783624416 BAM harmonized CPTAC3 b49db584-c2d9-49ac-9738-9c22259e7629 85ca6a1c224b1e9f9e9a8372aae3b6aa {"aliquot_tag": "ALQ_7207f3f3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06543.MethArray.Green.Tbm C3L-06543 AML Methylation_Array tumor_bone_marrow CPT0358290002 204930640111_R01C01_Grn.idat 13677961 IDAT Green NA CPTAC3 70858a96-b11d-40d3-8db1-8bf077e53e85 64f4261cfea3493ff26bb2771cdc1aef {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.MethArray.Red.Tbm C3L-06543 AML Methylation_Array tumor_bone_marrow CPT0358290002 204930640111_R01C01_Red.idat 13677961 IDAT Red NA CPTAC3 c035b53a-c69c-470a-a8ed-57e6666a3a72 4dbbe6002d986ec393d9c44177b94c4b {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.miRNA-Seq.S27_L007_R1.Tbm C3L-06543 AML miRNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC31-K00269_0297_AHKCFKBBXY_TAGCTT_S27_L007_R1_001.unaln.bam 288903547 BAM S27_L007_R1 submitted_unaligned CPTAC3 debca573-607d-463c-b56b-0cc0c3f32ffe 19bb902d3da74eac7f9267a03f550f21 {"aliquot_tag": "ALQ_32df3089", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.miRNA-Seq.Tbm.hg38 C3L-06543 AML miRNA-Seq tumor_bone_marrow CPT0358300002 f102b17c-7746-4c1e-bf39-b513c0f152ba_mirnaseq_gdc_realn.bam 300570662 BAM harmonized CPTAC3 9ad0a819-88e5-429a-a547-2c6b420df5be 42903a3e8cb4966dce38ee43768dc7a6 {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.RNA-Seq.chimeric.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.chimeric.gdc_realn.bam 90443077 BAM chimeric harmonized CPTAC3 98389374-1051-4cc4-bda4-9c556d8c19e8 27200ff14466003c509fac646654514a {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.RNA-Seq.genomic.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.genomic.gdc_realn.bam 8306566715 BAM genomic harmonized CPTAC3 549c5e69-8f7b-479e-bd74-68026c65440b f8f10c606e72d1203e424bd754158366 {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.RNA-Seq.S3_L001_R1.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R1_001.fastq.gz 4115245559 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 77523715-551e-4c3b-901b-3fd1c151fe92 d3fb702609844f415383181e441282ef {"aliquot_tag": "ALQ_32df3089", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.RNA-Seq.S3_L001_R2.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R2_001.fastq.gz 4570631944 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 8d808288-6ab7-42a6-9a1a-1d822136964b 589159ba7006e64722960a7f7cace8f2 {"aliquot_tag": "ALQ_32df3089", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.RNA-Seq.transcriptome.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.transcriptome.gdc_realn.bam 9249356567 BAM transcriptome harmonized CPTAC3 0d484508-fc46-47f3-b1da-573276682b43 453f62b2e2d17c3226fb3d7eb26b56fd {"aliquot_tag": "ALQ_32df3089", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.WGS.Nbc C3L-06543 AML WGS buccal_normal CPT0358260003 CPT0358260003.WholeGenome.RP-2158.bam 54966870388 BAM submitted_aligned CPTAC3 9e825789-7131-49b5-a378-cf157eee0ef5 d73aca2e8e6ead00e974f153d7343fbd {"aliquot_tag": "ALQ_1c4261a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06543.WGS.Nbc.hg38 C3L-06543 AML WGS buccal_normal CPT0358260003 e362e60c-2f7f-4aa9-8c80-7a72291d4f23_wgs_gdc_realn.bam 168766002144 BAM harmonized CPTAC3 10a4b333-5ffd-439e-a55a-aa95ac06b469 994bd5085cc9a84f3ba6aa059416ab3f {"aliquot_tag": "ALQ_1c4261a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06543.WGS.Tbm C3L-06543 AML WGS tumor_bone_marrow CPT0358290002 CPT0358290002.WholeGenome.RP-2158.bam 47954298822 BAM submitted_aligned CPTAC3 81a839c8-4541-4610-b633-7a1c5f3bc8bc b22b330125cc966d6e506c695d1e474c {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.WGS.Tbm.hg38 C3L-06543 AML WGS tumor_bone_marrow CPT0358290002 61f12148-dc2c-46c5-8be4-5c8b16ed62c6_wgs_gdc_realn.bam 141040966682 BAM harmonized CPTAC3 640af29c-4df0-4694-99a3-63b0820bf958 4782f13731c26f34b6358d07479e5d99 {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.WXS.Tbm C3L-06543 AML WXS tumor_bone_marrow CPT0358290002 CPT0358290002.WholeExome.RP-1303.bam 22528729323 BAM submitted_aligned CPTAC3 452b6f92-bd54-4040-9900-084a810db284 d59aced98cd0b4b9591ee546ea647870 {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06543.WXS.Tbm.hg38 C3L-06543 AML WXS tumor_bone_marrow CPT0358290002 61f12148-dc2c-46c5-8be4-5c8b16ed62c6_wxs_gdc_realn.bam 31717482877 BAM harmonized CPTAC3 2ae62a9d-2a2e-4c17-aa44-d040ec0dba74 b381684a15ec5cc664f2de87b426de3d {"aliquot_tag": "ALQ_f493815d", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06625.MethArray.Green.T C3L-06625 GBM Methylation_Array tumor CPT0406420007 205555390164_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9a577263-5e14-4507-b83a-2361bb583c50 8cd40b7a810af222d0774df87b902406 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.MethArray.Red.T C3L-06625 GBM Methylation_Array tumor CPT0406420007 205555390164_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 cd82719a-5b88-4984-bb4d-b4a15eda1297 3b42f9614cff6fd83890b260fa3d8936 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.miRNA-Seq.S33_L005_R1.T C3L-06625 GBM miRNA-Seq tumor CPT0406420010 210702_UNC32-K00270_0289_AHKJ22BBXY_GACGAC_S33_L005_R1_001.unaln.bam 293196759 BAM S33_L005_R1 submitted_unaligned CPTAC3 c987ae75-c80b-44e2-be21-841ecc36a725 59ac47e92a05991cd3fa2d28e160ade0 {"aliquot_tag": "ALQ_deb11bcc", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.miRNA-Seq.T.hg38 C3L-06625 GBM miRNA-Seq tumor CPT0406420010 6beb2dbc-b5af-4854-815c-36074e5ba4e2_mirnaseq_gdc_realn.bam 319131648 BAM harmonized CPTAC3 bae228f9-a4f6-4720-9b17-5662911b4bce 9276790072afaf454fe0186a986980be {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.RNA-Seq.chimeric.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.chimeric.gdc_realn.bam 144027014 BAM chimeric harmonized CPTAC3 571e910a-9ee6-4deb-8668-5f7109842a34 b9b65e48f8abe6365c79ff50eb4f471e {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.RNA-Seq.genomic.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.genomic.gdc_realn.bam 7627098861 BAM genomic harmonized CPTAC3 a26b57c7-8834-4051-86c1-b329c6dbe2fd a15c29fd62fa0555c8606f42891dfa48 {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.RNA-Seq.S17_L005_R1.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R1_001.fastq.gz 3568996815 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 54aee35f-9cd2-4a3b-9c49-dbffe0677d13 c51f006e65c14b137854421041313d09 {"aliquot_tag": "ALQ_deb11bcc", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.RNA-Seq.S17_L005_R2.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R2_001.fastq.gz 3833373967 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 4a16d6ea-281b-440a-9157-095d8785f68a e009c6a419524840cd8ae608c526bef1 {"aliquot_tag": "ALQ_deb11bcc", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.RNA-Seq.transcriptome.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.transcriptome.gdc_realn.bam 9445547831 BAM transcriptome harmonized CPTAC3 c6162faa-f678-452c-8c3d-3df865881747 a17a6643e4e5f6d879691fe91e019fa0 {"aliquot_tag": "ALQ_deb11bcc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.WGS.N C3L-06625 GBM WGS blood_normal CPT0405340002 CPT0405340002.WholeGenome.RP-2158.bam 24402990127 BAM submitted_aligned CPTAC3 8557dfec-f07f-4653-8321-b7f07f2346f1 04f2c4f563eea3fd8da2cb0c810228ac {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06625.WGS.N.hg38 C3L-06625 GBM WGS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wgs_gdc_realn.bam 70804556920 BAM harmonized CPTAC3 9d21e404-4a48-4eb3-8bee-66b811efd37e 99f877e5b2b4b0bcb770b74738d93964 {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06625.WGS.T C3L-06625 GBM WGS tumor CPT0406420007 CPT0406420007.WholeGenome.RP-2158.bam 26826605690 BAM submitted_aligned CPTAC3 eddaab40-a3b4-4285-bef3-e8bc7061f1eb 425f3a4256948608fc7532a6e41f74ec {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.WGS.T.hg38 C3L-06625 GBM WGS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wgs_gdc_realn.bam 77162667169 BAM harmonized CPTAC3 a7bd7fab-ba0d-43e2-9c92-ebbfb5d94cca e6114d394b6c4fdd8ae51e91348da081 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.WXS.N C3L-06625 GBM WXS blood_normal CPT0405340002 CPT0405340002.WholeExome.RP-1303.bam 26868199263 BAM submitted_aligned CPTAC3 dff80e81-9356-4055-8da6-f47c2c50c4b0 9307746a7c251f14b30c12f324eed9f0 {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06625.WXS.N.hg38 C3L-06625 GBM WXS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wxs_gdc_realn.bam 37479287643 BAM harmonized CPTAC3 12c76c83-4c16-4016-8594-e04207caf5e5 4cb124ebccd8b6f4e4db576091fefcf1 {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-06625.WXS.T C3L-06625 GBM WXS tumor CPT0406420007 CPT0406420007.WholeExome.RP-1303.bam 23679098646 BAM submitted_aligned CPTAC3 890457f0-bee4-4471-aab4-2343d2d208a9 6f3a7ebac22acfdd7c23ac434b160fe9 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06625.WXS.T.hg38 C3L-06625 GBM WXS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wxs_gdc_realn.bam 32707416253 BAM harmonized CPTAC3 926f6d61-0f53-4923-96cf-73626b0e0fe7 18ec221717fef1fa4068eefa8a88413f {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06801.MethArray.Green.Tbm C3L-06801 AML Methylation_Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Grn.idat 13677888 IDAT Green NA CPTAC3 12a60d2f-182b-4cbd-93bf-75957731562a 130c1c5738449f2c5c03e6d1d4349647 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.MethArray.Red.Tbm C3L-06801 AML Methylation_Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Red.idat 13677888 IDAT Red NA CPTAC3 3b21f869-af3f-4fcf-ba4e-e44ef358a88b 8ade34335c6249cbec15f3c10c04e546 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.miRNA-Seq.S30_L002_R1.Tbm C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCGTCC_S30_L002_R1_001.unaln.bam 197434802 BAM S30_L002_R1 submitted_unaligned CPTAC3 8a58be63-7a82-467d-8cc6-e2de62e31624 e1c278ecf3f8ee47fe0402f11a27e0d7 {"aliquot_tag": "ALQ_abfca663", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.miRNA-Seq.Tbm.hg38 C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 e71c465e-d8a0-4105-8219-197d77e36f26_mirnaseq_gdc_realn.bam 210256688 BAM harmonized CPTAC3 49def5b0-323f-4af6-9f9a-2b4870addb0f db259b637889b27b00ba1779bcd3c76d {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.RNA-Seq.chimeric.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.chimeric.gdc_realn.bam 465233189 BAM chimeric harmonized CPTAC3 ab1b1c9d-bb0c-420c-8044-372fca6f0deb b6e41293c40ce42995fc21f3fa881fad {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.RNA-Seq.genomic.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.genomic.gdc_realn.bam 7113549492 BAM genomic harmonized CPTAC3 9acc8253-7856-45ec-b0d0-4f159ff28268 9ab9878e3384043a72fc1949bdb15fe0 {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.RNA-Seq.S10_L003_R1.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3398816777 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 6c26ae3d-a9de-4c8b-aa18-8cfcb7f7e7fe ac4d508b55f026542caac3a16f8c1b94 {"aliquot_tag": "ALQ_abfca663", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.RNA-Seq.S10_L003_R2.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3657202227 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 f66374e3-8299-4707-a67b-3430583f0cf9 ac0b368dba1620170799fe40d7bb36b3 {"aliquot_tag": "ALQ_abfca663", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.RNA-Seq.transcriptome.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.transcriptome.gdc_realn.bam 8385537155 BAM transcriptome harmonized CPTAC3 fc3973a3-883c-4f77-a563-6f8d9b73ab2a c7414e1cfe02145f32069111f8f0baf8 {"aliquot_tag": "ALQ_abfca663", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.WGS.Nbc C3L-06801 AML WGS buccal_normal CPT0423360001 CPT0423360001.WholeGenome.RP-2158.bam 58187396478 BAM submitted_aligned CPTAC3 3d14d691-83dd-41b4-b9ce-5986cf29eb7b 849a0e8d3835e782a513faa51b72d290 {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06801.WGS.Nbc.hg38 C3L-06801 AML WGS buccal_normal CPT0423360001 509bac37-703e-4caf-b54e-1e4ed723f5b9_wgs_gdc_realn.bam 175494235031 BAM harmonized CPTAC3 527e15dd-11c6-455b-bf87-8b24bc28b6e1 e248adc830acdf0281593fd16ba4fe26 {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06801.WGS.Tbm C3L-06801 AML WGS tumor_bone_marrow CPT0423330002 CPT0423330002.WholeGenome.RP-2158.bam 50931849564 BAM submitted_aligned CPTAC3 fe5cd2cc-5572-438b-ab12-51d013f9ee7d fe98378c2474f6954e36dd70b7cee74e {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.WGS.Tbm.hg38 C3L-06801 AML WGS tumor_bone_marrow CPT0423330002 0777b76c-fbf2-406f-b010-9a63c2eb65c8_wgs_gdc_realn.bam 151138736406 BAM harmonized CPTAC3 c2325192-7bb3-4f7e-850b-1b1ccb80316b 90d0773bfe99fc272d6518ea1c5cffdd {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.WXS.Nbc C3L-06801 AML WXS buccal_normal CPT0423360001 CPT0423360001.WholeExome.RP-1303.bam 24060526494 BAM submitted_aligned CPTAC3 2c07a6fe-0152-42d8-84bb-8a7edc64705d 68f93feaa2d8d76f943d393d75151ff5 {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06801.WXS.Nbc.hg38 C3L-06801 AML WXS buccal_normal CPT0423360001 509bac37-703e-4caf-b54e-1e4ed723f5b9_wxs_gdc_realn.bam 32920465559 BAM harmonized CPTAC3 3f260eb2-a3a2-4167-864a-494392e107ef eb4fb6584e1a904900b4810e158be48f {"aliquot_tag": "ALQ_4835a4b9", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06801.WXS.Tbm C3L-06801 AML WXS tumor_bone_marrow CPT0423330002 CPT0423330002.WholeExome.RP-1303.bam 21674632232 BAM submitted_aligned CPTAC3 4e7599b9-010e-4e30-981b-3fa9aff70764 c576ee3b6b2c9ca41ccd3a566e2802ba {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06801.WXS.Tbm.hg38 C3L-06801 AML WXS tumor_bone_marrow CPT0423330002 0777b76c-fbf2-406f-b010-9a63c2eb65c8_wxs_gdc_realn.bam 30117583893 BAM harmonized CPTAC3 3d2f7892-de16-4f47-b622-ea20a319caa1 b14ad284d04abeff3ad1d8d2ba8adf23 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06803.MethArray.Green.Tbm C3L-06803 AML Methylation_Array tumor_bone_marrow CPT0423400002 205705520145_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a234be70-46b6-41f2-b1f4-cc71e2b2ff6e 8e37d5592d45b2364a6245032c181c08 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.MethArray.Red.Tbm C3L-06803 AML Methylation_Array tumor_bone_marrow CPT0423400002 205705520145_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 287a4fff-3ec5-499e-ab02-ce3dd6abb21b afda265e248c5b7e384c6f815a476835 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.miRNA-Seq.S37_L002_R1.Tbm C3L-06803 AML miRNA-Seq tumor_bone_marrow CPT0423410002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTAGAG_S37_L002_R1_001.unaln.bam 222419627 BAM S37_L002_R1 submitted_unaligned CPTAC3 21a29c76-0835-4600-a4b8-a9116c2000b2 492ee8f82088f94cde0a643b94226552 {"aliquot_tag": "ALQ_7e1919ab", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.miRNA-Seq.Tbm.hg38 C3L-06803 AML miRNA-Seq tumor_bone_marrow CPT0423410002 10291b60-2855-434d-b023-e18f00a28a57_mirnaseq_gdc_realn.bam 236160865 BAM harmonized CPTAC3 33a7f4bc-40b6-451a-a579-7cd3f02896aa b14fd81aef87e35d1fd630df9f0ba7dd {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.RNA-Seq.chimeric.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.chimeric.gdc_realn.bam 468880897 BAM chimeric harmonized CPTAC3 f035dc81-abe5-4db3-8ef7-c49500caa2a2 de48b8b97535fc0ad46131de797b3760 {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.RNA-Seq.genomic.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.genomic.gdc_realn.bam 7524313192 BAM genomic harmonized CPTAC3 9b5d38df-fe2e-4756-9645-a36ef3e45e95 a42502835cbdbcf0af8b25b37bda3247 {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.RNA-Seq.S9_L003_R1.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 3755558642 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 aff4657c-1c93-4991-bf9d-102858d36a82 53653c9b8531eb4d5b9f1adf9118b13f {"aliquot_tag": "ALQ_7e1919ab", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.RNA-Seq.S9_L003_R2.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 3965110182 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 696539ea-5c89-4d92-a676-9753068e6958 72eb660fe328b402e0cbc1bc5cb47fcf {"aliquot_tag": "ALQ_7e1919ab", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.RNA-Seq.transcriptome.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.transcriptome.gdc_realn.bam 9929593111 BAM transcriptome harmonized CPTAC3 3a9d4ebd-f70e-40d5-a262-2b5d84b5ebaf a53077ab55f3dddbba1cf24c5841624c {"aliquot_tag": "ALQ_7e1919ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.WGS.Nbc C3L-06803 AML WGS buccal_normal CPT0423430001 CPT0423430001.WholeGenome.RP-2158.bam 45232516141 BAM submitted_aligned CPTAC3 6176d9fe-69f4-4f7a-98ba-da9ccd13dbf4 5a271a4446ecc44cf962988f887e174c {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06803.WGS.Nbc.hg38 C3L-06803 AML WGS buccal_normal CPT0423430001 fb85a170-079b-4546-8d62-d98880d0892a_wgs_gdc_realn.bam 137097285714 BAM harmonized CPTAC3 887b6d76-aeda-4618-b395-4953f9f27201 2cc5c62a6c10b800f5e66e3fb5be3206 {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06803.WGS.Tbm C3L-06803 AML WGS tumor_bone_marrow CPT0423400002 CPT0423400002.WholeGenome.RP-2158.bam 54404756289 BAM submitted_aligned CPTAC3 7630eb41-75bf-4708-a031-bf8789837fd3 cf2dc8671b8572cf84e930e0558469b6 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.WGS.Tbm.hg38 C3L-06803 AML WGS tumor_bone_marrow CPT0423400002 ad079273-05c6-4e9e-9c99-c9723ff44b2a_wgs_gdc_realn.bam 161825277408 BAM harmonized CPTAC3 c457f0cc-58e3-4433-b0ac-ffdef5c4a69a cc1c7090606ecac61a089a82210c2209 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.WXS.Nbc C3L-06803 AML WXS buccal_normal CPT0423430001 CPT0423430001.WholeExome.RP-1303.bam 22900150133 BAM submitted_aligned CPTAC3 78723427-74a2-41c7-a60e-8af263efb903 5728d5db8d6086b85ef912a6f1c2796e {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06803.WXS.Nbc.hg38 C3L-06803 AML WXS buccal_normal CPT0423430001 fb85a170-079b-4546-8d62-d98880d0892a_wxs_gdc_realn.bam 31737986860 BAM harmonized CPTAC3 5f66e2ee-16bc-449e-af44-0d580e957a50 86aa31b2458f357e3e3c4d873bfbe3dc {"aliquot_tag": "ALQ_9dd01b71", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06803.WXS.Tbm C3L-06803 AML WXS tumor_bone_marrow CPT0423400002 CPT0423400002.WholeExome.RP-1303.bam 26183254766 BAM submitted_aligned CPTAC3 9535af0b-cec0-4d06-93ba-a8b36985b1b0 60489518be798f1e242ec0a2ea3a9501 {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06803.WXS.Tbm.hg38 C3L-06803 AML WXS tumor_bone_marrow CPT0423400002 ad079273-05c6-4e9e-9c99-c9723ff44b2a_wxs_gdc_realn.bam 36395937526 BAM harmonized CPTAC3 a1e83679-d777-4421-af92-2bc1cf9ae681 a84900ac9c64b0c55820dd776b3ac3cc {"aliquot_tag": "ALQ_4379301b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06806.MethArray.Green.Tbm C3L-06806 AML Methylation_Array tumor_bone_marrow CPT0394990002 205555390176_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fde29f11-1de4-495c-93da-ae2dcb4bcb75 3b4643ac91b379f7a1561e553a2fcf5d {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.MethArray.Red.Tbm C3L-06806 AML Methylation_Array tumor_bone_marrow CPT0394990002 205555390176_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 51937697-5728-4e37-98f7-15d1401c29ec 6f1a51e7a2c0b32fd9e4a5ca86426809 {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.miRNA-Seq.S25_L007_R1.Tbm C3L-06806 AML miRNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC31-K00269_0297_AHKCFKBBXY_GGCTAC_S25_L007_R1_001.unaln.bam 276008939 BAM S25_L007_R1 submitted_unaligned CPTAC3 51ed8f1f-3941-41da-b6ab-073753a7006f 65aab5a3dc1233d5e8985bb0895dd7eb {"aliquot_tag": "ALQ_823336a8", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06806.miRNA-Seq.Tbm.hg38 C3L-06806 AML miRNA-Seq tumor_bone_marrow CPT0395000002 6e87c1b9-c2fe-481d-9474-e47b4c4605f7_mirnaseq_gdc_realn.bam 297603488 BAM harmonized CPTAC3 fb8cf12b-b42c-4879-97bf-0fa448c1abf5 a5c8296324aabc8063e641f50decb340 {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06806.RNA-Seq.chimeric.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.chimeric.gdc_realn.bam 139385777 BAM chimeric harmonized CPTAC3 f2bcda37-08db-4f49-8799-8e68789534f7 e0a52e4a9fc6be515ca2ee6ece4f5905 {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.RNA-Seq.genomic.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.genomic.gdc_realn.bam 8796614508 BAM genomic harmonized CPTAC3 31923aa6-86eb-4b44-8306-54ea4f5977d5 c0229a1c545e82483b09b8da48b7e508 {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.RNA-Seq.S4_L001_R1.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R1_001.fastq.gz 4331029607 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 f5f11d2f-613f-48f1-ac63-f9064be02cb4 1772b69ed9be8758443dc35a7a1f19a1 {"aliquot_tag": "ALQ_823336a8", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06806.RNA-Seq.S4_L001_R2.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R2_001.fastq.gz 4902540092 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 585ffa5e-16be-4a73-b6be-685582e95dc2 f1090b2d4335cd0e32a1d9c4e92ec52c {"aliquot_tag": "ALQ_823336a8", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06806.RNA-Seq.transcriptome.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.transcriptome.gdc_realn.bam 10773946962 BAM transcriptome harmonized CPTAC3 5a13bee5-20ec-447b-afa9-40daf6258ad9 db2f8ee158a0ddca82f5e775f07ee10d {"aliquot_tag": "ALQ_823336a8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.WGS.Nbc C3L-06806 AML WGS buccal_normal CPT0395090002 CPT0395090002.WholeGenome.RP-2158.bam 70305255645 BAM submitted_aligned CPTAC3 e7dfb363-efbb-400c-8899-08b6fb28871e 8c8b7472a8999ce42f86e33553fcb830 {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06806.WGS.Nbc.hg38 C3L-06806 AML WGS buccal_normal CPT0395090002 3a30f07b-1d50-4585-832d-9702d446060b_wgs_gdc_realn.bam 204000841502 BAM harmonized CPTAC3 0c557241-6ab1-42cb-b964-30c1cf2c62b2 1dcbfcf440e6dfe86734d654eb74082e {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06806.WGS.Tbm C3L-06806 AML WGS tumor_bone_marrow CPT0394990002 CPT0394990002.WholeGenome.RP-2158.bam 53220155635 BAM submitted_aligned CPTAC3 a1da9905-acf4-4d48-a195-8a6bbfb85b8c 2585eeb36837f7ebcabe8fce15434d52 {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.WGS.Tbm.hg38 C3L-06806 AML WGS tumor_bone_marrow CPT0394990002 2db84bd7-0618-44c7-888f-04649732c477_wgs_gdc_realn.bam 150720677216 BAM harmonized CPTAC3 ec74a3e3-fe3d-469a-8b73-96f5f2e1539f 62d192d98b3ce38fab5bb4de5ffb575a {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.WXS.Nbc C3L-06806 AML WXS buccal_normal CPT0395090002 CPT0395090002.WholeExome.RP-1303.bam 24819494957 BAM submitted_aligned CPTAC3 3c0b8f60-6e11-48d0-b4c4-b63543d9c9da c37b3c7f073d350aee432c07048ff19b {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06806.WXS.Nbc.hg38 C3L-06806 AML WXS buccal_normal CPT0395090002 3a30f07b-1d50-4585-832d-9702d446060b_wxs_gdc_realn.bam 34201681879 BAM harmonized CPTAC3 bf4c8c61-9d59-4a3a-952f-bd5ede4dd1f0 b9fffa000c5e5857bbcfc4c222db3681 {"aliquot_tag": "ALQ_8f2354d9", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06806.WXS.Tbm C3L-06806 AML WXS tumor_bone_marrow CPT0394990002 CPT0394990002.WholeExome.RP-1303.bam 21102974928 BAM submitted_aligned CPTAC3 cd871dda-f790-4d8a-93f8-8fd0bbddb25b 964c871ce47b807ddcba3665bd1be81b {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06806.WXS.Tbm.hg38 C3L-06806 AML WXS tumor_bone_marrow CPT0394990002 2db84bd7-0618-44c7-888f-04649732c477_wxs_gdc_realn.bam 29155742449 BAM harmonized CPTAC3 dbd8fb1f-b35d-49c0-b88c-1c79f192c8df 792a98a8a6e42d817351c8bb9b82c532 {"aliquot_tag": "ALQ_e5b0ea5", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06807.MethArray.Green.Tbm C3L-06807 AML Methylation_Array tumor_bone_marrow CPT0395130002 205555380136_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 cd9cde37-3b56-4ffe-be2a-565be0acc4ce b36b1e83d7e87bcb2f1b89bf59f2140a {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.MethArray.Red.Tbm C3L-06807 AML Methylation_Array tumor_bone_marrow CPT0395130002 205555380136_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 8876c61a-3d01-4c6f-810f-469878076a04 10849ac2956408b085e7990050fd5719 {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.miRNA-Seq.S22_L007_R1.Tbm C3L-06807 AML miRNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTTGTA_S22_L007_R1_001.unaln.bam 327432901 BAM S22_L007_R1 submitted_unaligned CPTAC3 f4bc6e8e-2d7a-40fa-8359-e68b94dfb704 d203634d37deaab03afe2529f50822ab {"aliquot_tag": "ALQ_bcef43cd", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06807.miRNA-Seq.Tbm.hg38 C3L-06807 AML miRNA-Seq tumor_bone_marrow CPT0395140002 96551fae-a02c-4c79-979e-9c2e7c137e14_mirnaseq_gdc_realn.bam 341844415 BAM harmonized CPTAC3 cdb9ec31-b9c2-4e02-9203-c3c1d93fff14 42cb61780a0e3491747e2e0866536aa2 {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06807.RNA-Seq.chimeric.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.chimeric.gdc_realn.bam 88091711 BAM chimeric harmonized CPTAC3 6248136d-7486-40fe-950d-c1ed520c3b07 5f1ee48e2d988f798ac4a36fbfd341b1 {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.RNA-Seq.genomic.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.genomic.gdc_realn.bam 8337747777 BAM genomic harmonized CPTAC3 71f4c878-35cc-4003-96c3-9b30604242b8 86568583a1e8b1b564b29c64a3772dfe {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.RNA-Seq.S2_L001_R1.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R1_001.fastq.gz 3691170140 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 fccb07d3-3428-4b00-ae11-1a0447e36d72 8af97876734e942098ecf4eac3358b86 {"aliquot_tag": "ALQ_bcef43cd", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06807.RNA-Seq.S2_L001_R2.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R2_001.fastq.gz 4227720079 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 f7500ab8-09a8-4546-9672-945cb3e59038 e21c09021dcf609de60728e37b99b7f6 {"aliquot_tag": "ALQ_bcef43cd", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06807.RNA-Seq.transcriptome.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.transcriptome.gdc_realn.bam 10452764936 BAM transcriptome harmonized CPTAC3 e87aab6e-f620-45b9-bbf0-64ddd52e9d70 a18ce028a2d1fce7b892b3c46e2f359f {"aliquot_tag": "ALQ_bcef43cd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.WGS.Nbc C3L-06807 AML WGS buccal_normal CPT0395180002 CPT0395180002.WholeGenome.RP-2158.bam 54652441435 BAM submitted_aligned CPTAC3 ee3e9819-a537-49d6-bede-82bc5bbb9dde 51bed20f3cd4d49c4e8578224fa8ac9f {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06807.WGS.Nbc.hg38 C3L-06807 AML WGS buccal_normal CPT0395180002 c68a5bcd-cb06-4682-9639-359f86ec9dac_wgs_gdc_realn.bam 165305986166 BAM harmonized CPTAC3 a5e65538-6337-4ca8-80e1-08d7f8916278 cc3bc0a96a01257e41fa0f7f59f01df4 {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06807.WGS.Tbm C3L-06807 AML WGS tumor_bone_marrow CPT0395130002 CPT0395130002.WholeGenome.RP-2158.bam 50481499338 BAM submitted_aligned CPTAC3 6eec7a32-f07c-45ab-9ef8-1f57bf4fd58c 45adac0222e4f18df2ed2ea92192eabe {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.WGS.Tbm.hg38 C3L-06807 AML WGS tumor_bone_marrow CPT0395130002 d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wgs_gdc_realn.bam 153701170789 BAM harmonized CPTAC3 532cdf3e-715b-41c7-af0f-e9ff9a4fb643 a8b2d8d05c6da6538f2bf00ef31a8ace {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.WXS.Nbc C3L-06807 AML WXS buccal_normal CPT0395180002 CPT0395180002.WholeExome.RP-1303.bam 26877871354 BAM submitted_aligned CPTAC3 8cd2af62-e664-46d2-8779-b8544bb11967 4c2e863f349ad92ad9d064dc223e8256 {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06807.WXS.Nbc.hg38 C3L-06807 AML WXS buccal_normal CPT0395180002 c68a5bcd-cb06-4682-9639-359f86ec9dac_wxs_gdc_realn.bam 37138537545 BAM harmonized CPTAC3 ef32ceab-0642-43ae-a9b2-3267328f1ff9 b822715341a3f419cd3dbff4f91b2ef9 {"aliquot_tag": "ALQ_791faecc", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06807.WXS.Tbm C3L-06807 AML WXS tumor_bone_marrow CPT0395130002 CPT0395130002.WholeExome.RP-1303.bam 20504709483 BAM submitted_aligned CPTAC3 a5acc15a-ee23-4e0b-80d7-19b38c0c73d3 bfac3b1f88b5e2e9052de10bd50d54b0 {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06807.WXS.Tbm.hg38 C3L-06807 AML WXS tumor_bone_marrow CPT0395130002 d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wxs_gdc_realn.bam 28299634890 BAM harmonized CPTAC3 8a45f79a-4cdb-4c86-91bb-e82d221fb190 6225d5b140f9927d6eab7cc513549b75 {"aliquot_tag": "ALQ_ecf9fdd", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06809.MethArray.Green.Tbm C3L-06809 AML Methylation_Array tumor_bone_marrow CPT0423800002 205705520128_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 94825f27-9b10-43c0-ab4b-a5b28463de6a 03dfc288a40f1a04e8419b14d2af792b {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.MethArray.Red.Tbm C3L-06809 AML Methylation_Array tumor_bone_marrow CPT0423800002 205705520128_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 ccdabe3f-7619-4210-a417-0024b45216ec e672b577a22ba3ac1fd1b831d0062850 {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.miRNA-Seq.S40_L002_R1.Tbm C3L-06809 AML miRNA-Seq tumor_bone_marrow CPT0423790002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTTTCG_S40_L002_R1_001.unaln.bam 215564046 BAM S40_L002_R1 submitted_unaligned CPTAC3 73739b6a-96f9-42d0-a087-8da711422ef7 006977cf7f01eb42434bb97d51434df0 {"aliquot_tag": "ALQ_c8fd20c4", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.miRNA-Seq.Tbm.hg38 C3L-06809 AML miRNA-Seq tumor_bone_marrow CPT0423790002 9f2bc07b-5439-4d0a-b880-b4dac65a5f75_mirnaseq_gdc_realn.bam 236354089 BAM harmonized CPTAC3 2017eced-1b1e-4ad4-ad1b-d6cfbec052d0 d9a51a3b9c4e69f0b1896db06e7b2b90 {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.RNA-Seq.chimeric.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.chimeric.gdc_realn.bam 461234582 BAM chimeric harmonized CPTAC3 8775293b-bc7b-4087-bcec-8eadea926eb3 b5ff44b4f42591738fe069fa8514a8dd {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.RNA-Seq.genomic.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.genomic.gdc_realn.bam 6365773938 BAM genomic harmonized CPTAC3 dfabc53c-4df4-4610-a45c-64257d3d03d9 57a6da15f6a684606f140864d279997c {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.RNA-Seq.S15_L004_R1.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R1_001.fastq.gz 3191057802 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 ed6cfd64-6e72-42b6-844e-88234f7dbd0f ae636da75fa1b8ec2ca83a0f54d85e61 {"aliquot_tag": "ALQ_c8fd20c4", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.RNA-Seq.S15_L004_R2.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R2_001.fastq.gz 3380156902 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 fa5593e4-49bc-4567-84aa-3e6ed2214956 92cec9b832440c9f2cd8454ff4289f49 {"aliquot_tag": "ALQ_c8fd20c4", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.RNA-Seq.transcriptome.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.transcriptome.gdc_realn.bam 6753111201 BAM transcriptome harmonized CPTAC3 f1452d06-5ff6-4c59-ad04-c1192939ec7e 6cdd62d1952ea7b4c30af3145672e2a2 {"aliquot_tag": "ALQ_c8fd20c4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.WGS.Nbc C3L-06809 AML WGS buccal_normal CPT0423880001 CPT0423880001.WholeGenome.RP-2158.bam 45467051600 BAM submitted_aligned CPTAC3 9e511863-7709-4f6a-94ad-79b844931036 a2d03a33cf7f4a5a2eaea22023ca770b {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06809.WGS.Nbc.hg38 C3L-06809 AML WGS buccal_normal CPT0423880001 f12c5166-abe3-410e-9aea-37ef5d8bbe01_wgs_gdc_realn.bam 132246422085 BAM harmonized CPTAC3 57d26f1b-6ee3-425e-bab0-a006fab6ce90 c320ea25476e942b98e7735b7e50ed01 {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06809.WGS.Tbm C3L-06809 AML WGS tumor_bone_marrow CPT0423800002 CPT0423800002.WholeGenome.RP-2158.bam 52132870980 BAM submitted_aligned CPTAC3 6a38ea85-b31f-430e-bf26-a89bc0ee091e 84c20dca3789aa0ba8df6cc75a7c3ef7 {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.WGS.Tbm.hg38 C3L-06809 AML WGS tumor_bone_marrow CPT0423800002 fde4043f-91a8-42b6-8370-c1322ce342a7_wgs_gdc_realn.bam 153751798796 BAM harmonized CPTAC3 d5f641bb-a84b-4cb2-932f-e25c73ef9081 0aeaa193d8664364a4ffb5e33ec78f5c {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.WXS.Nbc C3L-06809 AML WXS buccal_normal CPT0423880001 CPT0423880001.WholeExome.RP-1303.bam 15058857765 BAM submitted_aligned CPTAC3 1e3d84db-47d4-46b1-91c1-fc5173c5ba15 99ba78f20f60d821cbbe290a93d5421f {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06809.WXS.Nbc.hg38 C3L-06809 AML WXS buccal_normal CPT0423880001 f12c5166-abe3-410e-9aea-37ef5d8bbe01_wxs_gdc_realn.bam 20270095113 BAM harmonized CPTAC3 b95d946c-ecc7-4fdf-96d6-76d3ee43c96d cf9d5e475dd8f8a828fa4d60b1705204 {"aliquot_tag": "ALQ_9dc2ea1b", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06809.WXS.Tbm C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 CPT0423800002.WholeExome.RP-1303.bam 22623712547 BAM submitted_aligned CPTAC3 52ff40ad-09e1-436a-9c29-18e9775426f0 5869900d905564e8fb2fd52e03592ba3 {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06809.WXS.Tbm.hg38 C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 fde4043f-91a8-42b6-8370-c1322ce342a7_wxs_gdc_realn.bam 31582854239 BAM harmonized CPTAC3 a8d547fc-05e3-482d-8b31-68ce5408887a 4703caaf6cc1d1dbafa4e16e3b44c06a {"aliquot_tag": "ALQ_34bbf060", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06912.MethArray.Green.T C3L-06912 LGG Methylation_Array tumor CPT0388940011 206009560066_R04C01_Grn.idat 13677950 IDAT Green NA CPTAC3 d8921cb7-13c6-493a-bec1-956b0c0b9acf b986d5a861649338c3fdd0b9409b907a {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06912.MethArray.Red.T C3L-06912 LGG Methylation_Array tumor CPT0388940011 206009560066_R04C01_Red.idat 13677950 IDAT Red NA CPTAC3 b31b7919-5e5e-4f48-b680-be7b5b94935c eb5afa5e81d98239383277ef71b86715 {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06912.miRNA-Seq.S5_L003_R1.T C3L-06912 LGG miRNA-Seq tumor CPT0388940008 220505_UNC32-K00270_0319_AHMV2KBBXY_CGGAAT_S5_L003_R1_001.unaln.bam 386996923 BAM S5_L003_R1 submitted_unaligned CPTAC3 c31ac29e-a56e-4e48-b377-caf32badf113 b3050cf5276ec747c59d992e1fc45dd1 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06912.miRNA-Seq.T.hg38 C3L-06912 LGG miRNA-Seq tumor CPT0388940008 dd37739a-f81b-472f-89ea-f146d9ac356a_mirnaseq_gdc_realn.bam 436232429 BAM harmonized CPTAC3 a25db8b9-eabf-48f6-b771-a622614d55e7 4b6810155e49b65050a0ccd59f8ddd24 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06912.RNA-Seq.chimeric.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.chimeric.gdc_realn.bam 468324695 BAM chimeric harmonized CPTAC3 cf5d0d25-96a8-4a6b-afe5-6d8936b1388f 9d2a2e860aa301c1eefa1c0388e8b0e7 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06912.RNA-Seq.genomic.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.genomic.gdc_realn.bam 7787271041 BAM genomic harmonized CPTAC3 94dbd3f9-2f9f-4182-8c61-e3b7fa6ec94b ce8cd6aed5308788986485a72ccdee50 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06912.RNA-Seq.S2_L006_R1.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R1_001.fastq.gz 3876945813 FASTQ S2_L006_R1 submitted_unaligned CPTAC3 8f2c2b6c-85de-49cf-86b7-f760a75e157a 0069031bc035562f5cc4e483f50f2875 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06912.RNA-Seq.S2_L006_R2.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R2_001.fastq.gz 4045804806 FASTQ S2_L006_R2 submitted_unaligned CPTAC3 9ff596fa-a71c-47cb-8547-114e3ba9da05 42a0d1c88599d3a9538397a067738f51 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06912.RNA-Seq.transcriptome.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.transcriptome.gdc_realn.bam 9751797948 BAM transcriptome harmonized CPTAC3 6f2e382a-3c4b-406d-94de-b68d644ad85d 60e18a03fd979d9b24a3dda6f0d71162 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06912.WGS.N C3L-06912 LGG WGS blood_normal CPT0389050005 CPT0389050005.WholeGenome.RP-2158.bam 70563558355 BAM submitted_aligned CPTAC3 767274c6-e610-4a1b-9899-1647d13939b4 d90469b36a7b9e3626ed3f96357b44bb {"aliquot_tag": "ALQ_dfbd4691", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06912.WGS.T C3L-06912 LGG WGS tumor CPT0388940011 CPT0388940011.WholeGenome.RP-2158.bam 129779104068 BAM submitted_aligned CPTAC3 b6f271ab-8986-4465-a214-f06c7e3b3d37 47ba8b844ec46eb1b3c81ca285afc00f {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.miRNA-Seq.S24_L005_R1.Tbm C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 239355372 BAM S24_L005_R1 submitted_unaligned CPTAC3 b59050bc-46cd-4685-885c-0158c2668e4c 1e2c1fba0ad0a930d6d10ea006301cca {"aliquot_tag": "ALQ_698c9c17", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.miRNA-Seq.Tbm.hg38 C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 bcc331a7-1f4e-4020-aae8-08f6d960d7f8_mirnaseq_gdc_realn.bam 249744954 BAM harmonized CPTAC3 5bf42a7a-6a8c-437e-8125-e87234c84ddb ea7ea497e1937eb7ea1ea6e3c5171a21 {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.RNA-Seq.chimeric.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.chimeric.gdc_realn.bam 396600781 BAM chimeric harmonized CPTAC3 931c1a2e-2cb3-4d27-9995-52c931611f94 92984513e647d89a0fd89436d127451a {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.RNA-Seq.genomic.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.genomic.gdc_realn.bam 10003377970 BAM genomic harmonized CPTAC3 d875ab14-6fa7-4323-965b-b2ceefaaa97f 6b409eb2c163ffa6acfa220c71e73f48 {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.RNA-Seq.S6_L002_R1.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R1_001.fastq.gz 4888313496 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 72612251-54a1-4fc4-a820-484b2c7da4b8 fcb2d69ec54b658b465679b9a2216b1f {"aliquot_tag": "ALQ_698c9c17", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.RNA-Seq.S6_L002_R2.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R2_001.fastq.gz 5232313383 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 73c35958-c9f9-474c-bf29-4a69904abece 432af186c1b8113dc77e5d9a4fb23999 {"aliquot_tag": "ALQ_698c9c17", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.RNA-Seq.transcriptome.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.transcriptome.gdc_realn.bam 10806456734 BAM transcriptome harmonized CPTAC3 83b9cadf-dc16-4054-a449-8bbdad4c501b 2e20fe6b1a1eaca6128e6ba7ca359977 {"aliquot_tag": "ALQ_698c9c17", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.WGS.Nbc C3L-06951 AML WGS buccal_normal CPT0394950002 CPT0394950002.WholeGenome.RP-2158.bam 44455880668 BAM submitted_aligned CPTAC3 e3edf313-263b-4cc0-8437-e6589bff148a c3bd91857360d1647eb5cdf40406fe52 {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06951.WGS.Nbc.hg38 C3L-06951 AML WGS buccal_normal CPT0394950002 6e106fcb-29f4-4c38-a4d2-920f1483a216_wgs_gdc_realn.bam 132392147301 BAM harmonized CPTAC3 78899104-aff8-41cb-865c-bbcda214cde3 b2d67cfe0eda5f04b32de7460e43170b {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06951.WGS.Tbm C3L-06951 AML WGS tumor_bone_marrow CPT0394100002 CPT0394100002.WholeGenome.RP-2158.bam 51518910865 BAM submitted_aligned CPTAC3 f2307760-ea9f-4d75-9a90-9e4d1788e655 409fcb59e293d4a9635857d5c7f9aa93 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.WGS.Tbm.hg38 C3L-06951 AML WGS tumor_bone_marrow CPT0394100002 cf505366-987d-4e91-b5fb-696d2cde908a_wgs_gdc_realn.bam 156050815880 BAM harmonized CPTAC3 097d3f76-6044-4639-a353-cddbae861463 7a8fb6e5ab7c623063bca5a89e73bb8b {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.WXS.Nbc C3L-06951 AML WXS buccal_normal CPT0394950002 CPT0394950002.WholeExome.RP-1303.bam 37650241835 BAM submitted_aligned CPTAC3 cd9384fa-19fc-4279-8626-5ccfcbef03b9 515effcc82d62bac2db60d83db74acea {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06951.WXS.Nbc.hg38 C3L-06951 AML WXS buccal_normal CPT0394950002 6e106fcb-29f4-4c38-a4d2-920f1483a216_wxs_gdc_realn.bam 51682983387 BAM harmonized CPTAC3 df688043-449a-4715-ada1-d3a72f034115 a17f7a02dcac079d50178c6859e0eaa5 {"aliquot_tag": "ALQ_cbabe3a4", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06951.WXS.Tbm C3L-06951 AML WXS tumor_bone_marrow CPT0394100002 CPT0394100002.WholeExome.RP-1303.bam 21283649473 BAM submitted_aligned CPTAC3 76e68d71-001f-4ded-94f7-b92ed5762c48 548350a2d6d7ecdb27e87c4c5befc0d7 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06951.WXS.Tbm.hg38 C3L-06951 AML WXS tumor_bone_marrow CPT0394100002 cf505366-987d-4e91-b5fb-696d2cde908a_wxs_gdc_realn.bam 29310105335 BAM harmonized CPTAC3 9bae9f55-ce2d-472c-9de6-1cce8a6931fe 52041bbcec90426e6600ccc2e98f12e9 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06952.MethArray.Green.Tbm C3L-06952 AML Methylation_Array tumor_bone_marrow CPT0395410002 205549610123_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d93d95c0-f3cf-40f9-a6b2-d5b18c8d6b4c 6d1c2ec61e02ccc261a584375fe2b0f7 {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.MethArray.Red.Tbm C3L-06952 AML Methylation_Array tumor_bone_marrow CPT0395410002 205549610123_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 098a232b-68bf-41f7-9041-7a64ac08f27f f182dc9282d1d18d7dc4a6f62666910e {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.miRNA-Seq.S17_L007_R1.Tbm C3L-06952 AML miRNA-Seq tumor_bone_marrow CPT0395420002 210331_UNC31-K00269_0297_AHKCFKBBXY_AGTTCC_S17_L007_R1_001.unaln.bam 327307434 BAM S17_L007_R1 submitted_unaligned CPTAC3 15c6d0d0-c26b-436a-b545-d5aaadeca776 e0588f2165419d02a5f78aa973e31f67 {"aliquot_tag": "ALQ_636227de", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06952.miRNA-Seq.Tbm.hg38 C3L-06952 AML miRNA-Seq tumor_bone_marrow CPT0395420002 30fc53f9-bc30-4b18-b02f-34e978ab3f58_mirnaseq_gdc_realn.bam 341488236 BAM harmonized CPTAC3 f9ae69cb-e501-4a27-895a-de92b3042c75 0b8c2f0beaf7b602295050175224a8ea {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06952.RNA-Seq.chimeric.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.chimeric.gdc_realn.bam 232963356 BAM chimeric harmonized CPTAC3 b833b07a-ed58-45d1-8647-8ca02985888d 53fc0f1bc4f5a82b68ff7daadf18abc0 {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.RNA-Seq.genomic.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.genomic.gdc_realn.bam 8571025082 BAM genomic harmonized CPTAC3 356413dc-97fb-4db0-87a6-506fc0290c62 9a9667c9fbc5d00f56e30bf4d19bc352 {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.RNA-Seq.S60_L007_R1.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R1_001.fastq.gz 3968146646 FASTQ S60_L007_R1 submitted_unaligned CPTAC3 782c5640-f8b7-45b8-ac5a-76650aa56634 836c7e2dd63131c7714545a2181cd09b {"aliquot_tag": "ALQ_636227de", "sample": "S60", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06952.RNA-Seq.S60_L007_R2.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R2_001.fastq.gz 4408260299 FASTQ S60_L007_R2 submitted_unaligned CPTAC3 53e1a623-56d3-4599-b9a1-2d4e77e67906 c9cda8d3c68b5197ba51dd804c66932d {"aliquot_tag": "ALQ_636227de", "sample": "S60", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06952.RNA-Seq.transcriptome.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.transcriptome.gdc_realn.bam 8656496991 BAM transcriptome harmonized CPTAC3 0c5f1608-a6c7-4c9e-8888-a0e07b4ade5c 2448895826651d406ca0ff24bc128bf4 {"aliquot_tag": "ALQ_636227de", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.WGS.Nbc C3L-06952 AML WGS buccal_normal CPT0395510002 CPT0395510002.WholeGenome.RP-2158.bam 75954257744 BAM submitted_aligned CPTAC3 0a5356fd-1f3f-4a03-b523-d7964e39bcc4 2c2a6e364f65c6d24143435e958d48a0 {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06952.WGS.Nbc.hg38 C3L-06952 AML WGS buccal_normal CPT0395510002 c1f795c9-57d0-4621-9675-cbffdae3e8e2_wgs_gdc_realn.bam 228222566924 BAM harmonized CPTAC3 fe83e9be-7e7a-4295-906d-0317b2a405b5 0471dda043fd793e1447dd603f6a5c54 {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06952.WGS.Tbm C3L-06952 AML WGS tumor_bone_marrow CPT0395410002 CPT0395410002.WholeGenome.RP-2158.bam 51171230305 BAM submitted_aligned CPTAC3 9026673e-52de-47de-b603-fdc55fbb7b9c 9d179a1ad9d9b6f787093f009a77f4eb {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.WGS.Tbm.hg38 C3L-06952 AML WGS tumor_bone_marrow CPT0395410002 156bb375-1e32-45ea-b6bb-2c8264042561_wgs_gdc_realn.bam 150043727921 BAM harmonized CPTAC3 e786c669-ae8d-4f7e-9ff3-a8b674b81574 85f9b048311ba91ade683b6d76cd5f1d {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.WXS.Nbc C3L-06952 AML WXS buccal_normal CPT0395510002 CPT0395510002.WholeExome.RP-1303.bam 22002595662 BAM submitted_aligned CPTAC3 01fca049-65fd-405b-b63a-b4dff2df8b78 c88373707a0553874a48ded5e5e7978b {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06952.WXS.Nbc.hg38 C3L-06952 AML WXS buccal_normal CPT0395510002 c1f795c9-57d0-4621-9675-cbffdae3e8e2_wxs_gdc_realn.bam 29996042851 BAM harmonized CPTAC3 6675d018-2b90-40db-9ce3-4a5b08793284 eba03d6d0ea9e55d234021aa1c943bad {"aliquot_tag": "ALQ_ef9e8eab", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06952.WXS.Tbm C3L-06952 AML WXS tumor_bone_marrow CPT0395410002 CPT0395410002.WholeExome.RP-1303.bam 26950284899 BAM submitted_aligned CPTAC3 49f23ebb-f5e4-45e6-8527-8a503fa8d973 5aa26de6bfc81a9b12b3316f4188ac4f {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06952.WXS.Tbm.hg38 C3L-06952 AML WXS tumor_bone_marrow CPT0395410002 156bb375-1e32-45ea-b6bb-2c8264042561_wxs_gdc_realn.bam 37511199516 BAM harmonized CPTAC3 3076a431-760e-4f15-b24e-c563256de372 5d0fbde8fbe847caabcaacddfa254c1f {"aliquot_tag": "ALQ_24c25d0e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06953.MethArray.Green.Tbm C3L-06953 AML Methylation_Array tumor_bone_marrow CPT0395220002 205555380155_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 41d398d2-add1-4700-8e43-12ebd5fdaf9d 3588200eefeeb1d11205bfecaa1a5567 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.MethArray.Red.Tbm C3L-06953 AML Methylation_Array tumor_bone_marrow CPT0395220002 205555380155_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 a15ce8cf-917d-4168-9823-35531af05a65 e5a58770087e976a8d8b46910b76f010 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.miRNA-Seq.S16_L007_R1.Tbm C3L-06953 AML miRNA-Seq tumor_bone_marrow CPT0395230002 210331_UNC31-K00269_0297_AHKCFKBBXY_AGTCAA_S16_L007_R1_001.unaln.bam 271339385 BAM S16_L007_R1 submitted_unaligned CPTAC3 dde5945b-0705-49da-9970-fa7f98623c57 0d14b7e872af879dcd4273ad0295ad0e {"aliquot_tag": "ALQ_885bed73", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06953.miRNA-Seq.Tbm.hg38 C3L-06953 AML miRNA-Seq tumor_bone_marrow CPT0395230002 91e85879-662c-4c71-980d-a58e4732345b_mirnaseq_gdc_realn.bam 282770503 BAM harmonized CPTAC3 4b7fa91e-ec25-4252-acd3-8cbe2de3a819 737111ffb2e0340b96030f512d76f7e6 {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06953.RNA-Seq.chimeric.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.chimeric.gdc_realn.bam 94701367 BAM chimeric harmonized CPTAC3 4a63c44e-3977-446b-a158-4239e218b08b 7136b10989960cfdab523e607c7d584f {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.RNA-Seq.genomic.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.genomic.gdc_realn.bam 8461643378 BAM genomic harmonized CPTAC3 aeab5b3a-51a4-466e-90ad-08e8b706dac5 a3e3bb4d7ff33baed2d1f5e36b5ef398 {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.RNA-Seq.S58_L007_R1.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R1_001.fastq.gz 4203285851 FASTQ S58_L007_R1 submitted_unaligned CPTAC3 5d86a6e3-615a-4394-991c-d9e3b53524ba b7abc88f28809b9e5f42cdf185dedcdb {"aliquot_tag": "ALQ_885bed73", "sample": "S58", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06953.RNA-Seq.S58_L007_R2.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R2_001.fastq.gz 4610087193 FASTQ S58_L007_R2 submitted_unaligned CPTAC3 c6aefb82-695a-4f31-9bc4-7b18ad9c12c5 2448c00e2c1418f9f3734cafd690d637 {"aliquot_tag": "ALQ_885bed73", "sample": "S58", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3L-06953.RNA-Seq.transcriptome.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.transcriptome.gdc_realn.bam 10798323578 BAM transcriptome harmonized CPTAC3 23c3b280-08e9-44db-9187-7dfc79749f62 2f8ca24193a381de3c6931ee525caf34 {"aliquot_tag": "ALQ_885bed73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.WGS.Nbc C3L-06953 AML WGS buccal_normal CPT0395300002 CPT0395300002.WholeGenome.RP-2158.bam 57220760446 BAM submitted_aligned CPTAC3 3f946631-f3c1-46c8-aaf5-a8784b22aa55 b240be47d491fa75ae611d2d585f5012 {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06953.WGS.Nbc.hg38 C3L-06953 AML WGS buccal_normal CPT0395300002 cc7377a7-4292-4a42-888a-59e14942e42f_wgs_gdc_realn.bam 167692914296 BAM harmonized CPTAC3 afa8c524-60e7-423b-9677-8653c4a5da65 9620afeaef05f9ea15920e46b33c7cfb {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06953.WGS.Tbm C3L-06953 AML WGS tumor_bone_marrow CPT0395220002 CPT0395220002.WholeGenome.RP-2158.bam 60825726424 BAM submitted_aligned CPTAC3 e2bad822-24ea-4524-aa4d-599c4b537429 6193087ce48179e4977d620ea6031f4e {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.WGS.Tbm.hg38 C3L-06953 AML WGS tumor_bone_marrow CPT0395220002 19eadde7-2a40-4880-900d-440197bd5266_wgs_gdc_realn.bam 181530152719 BAM harmonized CPTAC3 02b919c1-e7df-495f-8084-65f8a1af6e45 f0ebf7225cd6b3efc6b4d2f46b513202 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.WXS.Nbc C3L-06953 AML WXS buccal_normal CPT0395300002 CPT0395300002.WholeExome.RP-1303.bam 28034794123 BAM submitted_aligned CPTAC3 dfad5081-80c8-40d7-94e6-6a2f88a4aa4f d35dd7df532947c08d9638282d1cff69 {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06953.WXS.Nbc.hg38 C3L-06953 AML WXS buccal_normal CPT0395300002 cc7377a7-4292-4a42-888a-59e14942e42f_wxs_gdc_realn.bam 38181902951 BAM harmonized CPTAC3 ed6f6bd3-3d31-4dd8-8cb8-0bde987c9a1e 3a86e81f5db91985056d18f26a1f5be5 {"aliquot_tag": "ALQ_4a74406", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06953.WXS.Tbm C3L-06953 AML WXS tumor_bone_marrow CPT0395220002 CPT0395220002.WholeExome.RP-1303.bam 24227511690 BAM submitted_aligned CPTAC3 aa489119-ef01-4338-839b-0ffd14832733 fef39eaa9967b4cb9bee274e7bc5fee5 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06953.WXS.Tbm.hg38 C3L-06953 AML WXS tumor_bone_marrow CPT0395220002 19eadde7-2a40-4880-900d-440197bd5266_wxs_gdc_realn.bam 33729200165 BAM harmonized CPTAC3 b586f9bd-1b9f-4d68-8b7c-3b37b97a3725 228b495fa148a365010b298b19f6f619 {"aliquot_tag": "ALQ_b53bc4c3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06954.MethArray.Green.Tbm C3L-06954 AML Methylation_Array tumor_bone_marrow CPT0423470002 205705520145_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9c9659b5-caf6-4956-ae98-477e852aae4a b5fbb4e428a9fa450332d36623ebd897 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.MethArray.Red.Tbm C3L-06954 AML Methylation_Array tumor_bone_marrow CPT0423470002 205705520145_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 afb0c87d-0ea7-42c4-9de4-14e13c14d3f8 670330814ac3fe8cc5bd8be57f09bac2 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.miRNA-Seq.S38_L002_R1.Tbm C3L-06954 AML miRNA-Seq tumor_bone_marrow CPT0423480002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTCCGC_S38_L002_R1_001.unaln.bam 275216986 BAM S38_L002_R1 submitted_unaligned CPTAC3 3a167d9a-82fb-4944-8ecb-9b090de78afd ed473fffc34a385a69df8c8a79d62076 {"aliquot_tag": "ALQ_73097bda", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.miRNA-Seq.Tbm.hg38 C3L-06954 AML miRNA-Seq tumor_bone_marrow CPT0423480002 246cd9e5-be9c-46e0-8a7a-d2416500ce06_mirnaseq_gdc_realn.bam 303033677 BAM harmonized CPTAC3 c30d807f-37c6-49c5-bec0-fbcaf4810ce0 67d32d2900fccfde21d0c9cdc04d9f3a {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.RNA-Seq.chimeric.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.chimeric.gdc_realn.bam 472668209 BAM chimeric harmonized CPTAC3 e622cb1f-a8cd-4317-99ea-0d2f0e432e90 15668aba093a77944c4ad48a1cf7e44a {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.RNA-Seq.genomic.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.genomic.gdc_realn.bam 6902144941 BAM genomic harmonized CPTAC3 c4de3061-8b9c-40fe-bd11-b6eecfab8f07 085485ded0a02696a89aae647534ec40 {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.RNA-Seq.S11_L003_R1.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3449383220 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 6e69dd94-7aee-4c00-9685-cc4ba3fd648c c8e51812e89e631307f0bae7fdaf76a4 {"aliquot_tag": "ALQ_73097bda", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.RNA-Seq.S11_L003_R2.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3638286868 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 a266ecc3-6056-4bf3-b120-43a4c9028a9e 55a485a38fb6e5ec2ec317af2f2c551c {"aliquot_tag": "ALQ_73097bda", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.RNA-Seq.transcriptome.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.transcriptome.gdc_realn.bam 7750372808 BAM transcriptome harmonized CPTAC3 9c2266d6-7dbe-485a-a83d-3b7af76eee36 b0ad9e34c3b7e5e8f210ce5bddf50f6b {"aliquot_tag": "ALQ_73097bda", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.WGS.Nbc C3L-06954 AML WGS buccal_normal CPT0423500001 CPT0423500001.WholeGenome.RP-2158.bam 58884055193 BAM submitted_aligned CPTAC3 f7a5bedb-0983-4bdf-b113-c1ad8fa2ce97 fb465cef94ad852e1f9175e2ec6bf9ca {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06954.WGS.Nbc.hg38 C3L-06954 AML WGS buccal_normal CPT0423500001 ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wgs_gdc_realn.bam 188003601209 BAM harmonized CPTAC3 e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee 4336a22ce2d3fb0688f001561307386c {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06954.WGS.Tbm C3L-06954 AML WGS tumor_bone_marrow CPT0423470002 CPT0423470002.WholeGenome.RP-2158.bam 43251016065 BAM submitted_aligned CPTAC3 2f979a56-db4c-42cd-933d-ca5c169f8c66 d0cac524d0a7297b9ae021445c262d0b {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.WGS.Tbm.hg38 C3L-06954 AML WGS tumor_bone_marrow CPT0423470002 aa274cea-5bc3-419e-905e-3fd377deea83_wgs_gdc_realn.bam 126981110892 BAM harmonized CPTAC3 4aec74c8-8469-4ab7-874e-cd559c14c396 6c31cbc0c4c0e6fcdc9323fbcca69000 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.WXS.Nbc C3L-06954 AML WXS buccal_normal CPT0423500001 CPT0423500001.WholeExome.RP-1303.bam 24256707743 BAM submitted_aligned CPTAC3 296eb30a-fa65-4303-96b7-915727409251 07ebf0ec3b75938ad8b9c6ff95352a2b {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06954.WXS.Nbc.hg38 C3L-06954 AML WXS buccal_normal CPT0423500001 ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wxs_gdc_realn.bam 33673761951 BAM harmonized CPTAC3 82af1ee3-e913-4459-b382-234ff07db7c9 d037e87c2d83908b61f71cfd434bc808 {"aliquot_tag": "ALQ_112cb204", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06954.WXS.Tbm C3L-06954 AML WXS tumor_bone_marrow CPT0423470002 CPT0423470002.WholeExome.RP-1303.bam 24955957515 BAM submitted_aligned CPTAC3 6b5a4720-64bb-4a4a-b451-79e38291db71 1a8367f430206d28969a4068dfb68761 {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-06954.WXS.Tbm.hg38 C3L-06954 AML WXS tumor_bone_marrow CPT0423470002 aa274cea-5bc3-419e-905e-3fd377deea83_wxs_gdc_realn.bam 34659973786 BAM harmonized CPTAC3 6eb8ce2b-7b02-4f76-a9e9-337c110f9143 3901b0fe5124b8a8a6ce25e67432d74e {"aliquot_tag": "ALQ_f159ec0b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06956.MethArray.Green.Tpb C3L-06956 AML Methylation_Array tumor_peripheral_blood CPT0374940002 205707890143_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 eb1a15ed-0629-4f18-8074-548f3c644183 07e6fdcbaad467bb933fa856aeb4b93f {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.MethArray.Red.Tpb C3L-06956 AML Methylation_Array tumor_peripheral_blood CPT0374940002 205707890143_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 becba68d-6f48-4494-802c-88d2669cf05e 1352c365ebe97015246262fbeeb70b41 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.miRNA-Seq.S3_L001_R1.Tpb C3L-06956 AML miRNA-Seq tumor_peripheral_blood CPT0374950002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACGAT_S3_L001_R1_001.unaln.bam 358467091 BAM S3_L001_R1 submitted_unaligned CPTAC3 2cfcb7f4-d544-49b8-97de-27f441184fc7 067612655d6b83aa610de5653ab53052 {"aliquot_tag": "ALQ_de21f196", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.miRNA-Seq.Tpb.hg38 C3L-06956 AML miRNA-Seq tumor_peripheral_blood CPT0374950002 692193c7-43bd-4cb6-8d95-ea7bae96d1e2_mirnaseq_gdc_realn.bam 395286845 BAM harmonized CPTAC3 13951a81-a1c6-4955-b3be-1fb273603a1e ac427c830f9ad9873d7b520fd7278f4f {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.RNA-Seq.chimeric.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.chimeric.gdc_realn.bam 629501646 BAM chimeric harmonized CPTAC3 75d7ee0f-1e81-4109-bf9f-3319cfe8a266 9e2a4617d69266aadd9ae58317fa2d08 {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.RNA-Seq.genomic.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.genomic.gdc_realn.bam 9556913650 BAM genomic harmonized CPTAC3 4638749f-fa56-4155-98a8-eecd9834daa9 506b2b84af4a93a3345aa096bdd4ebe8 {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.RNA-Seq.S2_L001_R1.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R1_001.fastq.gz 4494920980 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 6a2d3cf1-f333-4a81-97ba-debd9fcf5bd9 10318a1832969b899e26d67ea85c177a {"aliquot_tag": "ALQ_de21f196", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.RNA-Seq.S2_L001_R2.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R2_001.fastq.gz 4971841013 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 118a555b-6ad2-4592-ad23-800e55af36cf 03e8f725b198b146e3200c3d06ad1f37 {"aliquot_tag": "ALQ_de21f196", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.RNA-Seq.transcriptome.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.transcriptome.gdc_realn.bam 7976814554 BAM transcriptome harmonized CPTAC3 831017b4-ef34-4289-8f4b-8ca332540f52 2005d55137e38fd1f63b34443e8bc4c1 {"aliquot_tag": "ALQ_de21f196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.WGS.Nbc C3L-06956 AML WGS buccal_normal CPT0375020002 CPT0375020002.WholeGenome.RP-2158.bam 43333454812 BAM submitted_aligned CPTAC3 277f6625-57d6-4ec2-a153-c3e3b414b64d 672c0bafc967dc5057930d095c87fac9 {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06956.WGS.Nbc.hg38 C3L-06956 AML WGS buccal_normal CPT0375020002 804b5c18-8967-45ca-bc6c-43194e323041_wgs_gdc_realn.bam 130026449193 BAM harmonized CPTAC3 2e498503-abe4-4a2e-bd04-c67b0c6f4f21 b105bfd8e16dc093865ae20354372945 {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06956.WGS.Tpb C3L-06956 AML WGS tumor_peripheral_blood CPT0374940002 CPT0374940002.WholeGenome.RP-2158.bam 45296406538 BAM submitted_aligned CPTAC3 db7c9ffb-e3fc-41b2-8ff2-d6570c102778 40b8c4b2d90c7480788445e1d065216a {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.WGS.Tpb.hg38 C3L-06956 AML WGS tumor_peripheral_blood CPT0374940002 51774116-cdbd-4aa9-ac9b-acf207f1b92a_wgs_gdc_realn.bam 136257088788 BAM harmonized CPTAC3 a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8 65f76d5b645920ad83d7d7d9fb244d75 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.WXS.Nbc C3L-06956 AML WXS buccal_normal CPT0375020002 CPT0375020002.WholeExome.RP-1303.bam 27737887396 BAM submitted_aligned CPTAC3 3d734d08-7e85-4326-a4fa-b34a3130ba09 7957c31e83f282546bd7aa804d6344ea {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06956.WXS.Nbc.hg38 C3L-06956 AML WXS buccal_normal CPT0375020002 804b5c18-8967-45ca-bc6c-43194e323041_wxs_gdc_realn.bam 37221881366 BAM harmonized CPTAC3 f8d8ac5d-64bc-4103-8946-5a5d8a87d717 3b33c3cd6a5ca207fe909cc2edc83893 {"aliquot_tag": "ALQ_ed7977fa", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06956.WXS.Tpb C3L-06956 AML WXS tumor_peripheral_blood CPT0374940002 CPT0374940002.WholeExome.RP-1303.bam 23437020362 BAM submitted_aligned CPTAC3 7298cbd4-edb0-42c7-8fe5-4289a771c530 10a4b5af12a014868dc2a0f49350a564 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06956.WXS.Tpb.hg38 C3L-06956 AML WXS tumor_peripheral_blood CPT0374940002 51774116-cdbd-4aa9-ac9b-acf207f1b92a_wxs_gdc_realn.bam 32868413019 BAM harmonized CPTAC3 d55d74b0-9368-4db1-ad56-d5a2bfa515bb 1601648b4cab26bce48d2a6097dd6529 {"aliquot_tag": "ALQ_e341d826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06960.MethArray.Green.Tpb C3L-06960 AML Methylation_Array tumor_peripheral_blood CPT0391970002 205707890036_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 fc35487c-69cc-410a-aea6-0593173b5192 4a5ba335a0851b9698892f24e59cc637 {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.MethArray.Red.Tpb C3L-06960 AML Methylation_Array tumor_peripheral_blood CPT0391970002 205707890036_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 065201d5-0aa5-4ff3-ab51-bacb49408051 da6b8ea593f2c6148449a4ee3763ef38 {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.miRNA-Seq.S25_L002_R1.Tpb C3L-06960 AML miRNA-Seq tumor_peripheral_blood CPT0391980002 220125_UNC32-K00270_0311_AHMNYYBBXY_AGTCAA_S25_L002_R1_001.unaln.bam 294440865 BAM S25_L002_R1 submitted_unaligned CPTAC3 1b06ea8c-c156-4bed-8714-bc9434fe390f 2aef91b1aa6645da93269690bedeb042 {"aliquot_tag": "ALQ_610308b2", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.miRNA-Seq.Tpb.hg38 C3L-06960 AML miRNA-Seq tumor_peripheral_blood CPT0391980002 9efba198-49e6-4e3e-a632-fe36814c7336_mirnaseq_gdc_realn.bam 306803172 BAM harmonized CPTAC3 d835b66e-f355-4118-bee8-260ff7baa760 e3b78b76b14bb86a35fb80a6b977b3d4 {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.RNA-Seq.chimeric.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.chimeric.gdc_realn.bam 347462824 BAM chimeric harmonized CPTAC3 94ae252f-4412-4e35-b527-d3766256ab59 78686b235db61c8ce30912fa811c6a3b {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.RNA-Seq.genomic.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.genomic.gdc_realn.bam 7033891116 BAM genomic harmonized CPTAC3 66d47de4-8611-4a22-b172-b8d547c8e63e 62eb7bce53d2f7ea72506473704f679a {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.RNA-Seq.S7_L002_R1.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3385464526 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 15059745-078d-4e41-a58e-3aabce6b8e30 df4e67d43335f4dd8f162796b91e5111 {"aliquot_tag": "ALQ_610308b2", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.RNA-Seq.S7_L002_R2.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3595422587 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 d4495785-79a6-4be9-a9eb-1d45af1c84a3 950d67f187a0d45e22be7e9a07b163fa {"aliquot_tag": "ALQ_610308b2", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.RNA-Seq.transcriptome.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.transcriptome.gdc_realn.bam 8446428278 BAM transcriptome harmonized CPTAC3 231bfa39-0ed8-4fca-8ca5-f06631a04f4f 17ed3005a7f0b5afbbed694988ae34d0 {"aliquot_tag": "ALQ_610308b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.WGS.Nbc C3L-06960 AML WGS buccal_normal CPT0391930002 CPT0391930002.WholeGenome.RP-2158.bam 45097619411 BAM submitted_aligned CPTAC3 47fd7127-6985-4f77-a54a-7a4581074f39 fb739ee9c131b8e8c7e8fbb8d7d2eb0f {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06960.WGS.Nbc.hg38 C3L-06960 AML WGS buccal_normal CPT0391930002 46a69e2f-7525-48ee-9e1e-460646c051a1_wgs_gdc_realn.bam 133034482233 BAM harmonized CPTAC3 829aaac7-f4bf-464c-8823-3a474e550f29 1e919bbd80afed0c6831305f27f597b8 {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06960.WGS.Tpb C3L-06960 AML WGS tumor_peripheral_blood CPT0391970002 CPT0391970002.WholeGenome.RP-2158.bam 44778837234 BAM submitted_aligned CPTAC3 edafa772-9365-4baa-9c34-ea1e72f8bab3 32ebc1360d924a286337a2c9a57dd5ab {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.WGS.Tpb.hg38 C3L-06960 AML WGS tumor_peripheral_blood CPT0391970002 cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wgs_gdc_realn.bam 131643530554 BAM harmonized CPTAC3 71fada9d-8485-4d3a-bd18-413e4a5ccd49 a8a87130f553828b37f4f79deead2f9b {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.WXS.Nbc C3L-06960 AML WXS buccal_normal CPT0391930002 CPT0391930002.WholeExome.RP-1303.bam 28193236196 BAM submitted_aligned CPTAC3 f35c619d-8504-429e-8a9a-e0580110d06f 7fa0ed67d76c39156918290b57b3b4dc {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06960.WXS.Nbc.hg38 C3L-06960 AML WXS buccal_normal CPT0391930002 46a69e2f-7525-48ee-9e1e-460646c051a1_wxs_gdc_realn.bam 38170724026 BAM harmonized CPTAC3 08a63ff1-95e7-4eb4-9a5e-51bff51f2b51 cb62cee1bb6111566a28fc732f214faa {"aliquot_tag": "ALQ_16d339a3", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06960.WXS.Tpb C3L-06960 AML WXS tumor_peripheral_blood CPT0391970002 CPT0391970002.WholeExome.RP-1303.bam 22943212472 BAM submitted_aligned CPTAC3 bedfbabf-373f-4507-85ac-ec986c655a85 71757f1a37b1427c614b4c2f196fd0b1 {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06960.WXS.Tpb.hg38 C3L-06960 AML WXS tumor_peripheral_blood CPT0391970002 cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wxs_gdc_realn.bam 32113200802 BAM harmonized CPTAC3 38d40850-2603-450c-8477-d3744bf24f22 840f7033b7b949dc8cbba73180b0482b {"aliquot_tag": "ALQ_e3539f63", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06981.MethArray.Green.Tpb C3L-06981 AML Methylation_Array tumor_peripheral_blood CPT0404530002 205987770157_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 fbbd0ef4-f1e2-4205-b713-adfdeaa13e5d 26377aa1c3838e7760d8901fe5ca8e23 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.MethArray.Red.Tpb C3L-06981 AML Methylation_Array tumor_peripheral_blood CPT0404530002 205987770157_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 80f8cfe6-44cd-47cb-8b50-cb90f29585bc 5d65d8e3f3c490bd9a4147e1f7bcade8 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.miRNA-Seq.S3_L003_R1.Tpb C3L-06981 AML miRNA-Seq tumor_peripheral_blood CPT0404510002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACGAT_S3_L003_R1_001.unaln.bam 229303529 BAM S3_L003_R1 submitted_unaligned CPTAC3 f87581fa-f6e4-4cc0-8e38-d8ac74216084 d9b59304f418397b0daefe093a893f59 {"aliquot_tag": "ALQ_32c7f3fd", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.miRNA-Seq.Tpb.hg38 C3L-06981 AML miRNA-Seq tumor_peripheral_blood CPT0404510002 b381ae91-9163-4d85-b2eb-1846e2d1f048_mirnaseq_gdc_realn.bam 257635643 BAM harmonized CPTAC3 93e07315-0266-4761-a2ee-32ae02370f90 ced26ce085439b6315076ee7f585f18b {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.RNA-Seq.chimeric.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.chimeric.gdc_realn.bam 475251665 BAM chimeric harmonized CPTAC3 3fda4ed6-7d88-4de4-990b-0010dc7a0bbf 42a5c2cd1e15f169d0920bde0d3848bb {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.RNA-Seq.genomic.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.genomic.gdc_realn.bam 7572644391 BAM genomic harmonized CPTAC3 1c1b4b23-bc6b-46e9-b814-531b57e18dec 5438668bc5c1cd7fc366a7daa5346668 {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.RNA-Seq.S26_L007_R1.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R1_001.fastq.gz 3818718609 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 11b4e608-a77f-4c41-9687-928b46e0844a 48ae34d0d7f477a69b8af6db0af942d6 {"aliquot_tag": "ALQ_32c7f3fd", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.RNA-Seq.S26_L007_R2.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R2_001.fastq.gz 4026831718 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 e6c8a6fe-6bba-4ed2-aec5-ba81545f6a4f 0deb1741f4f9ed79b8769e961449bbc8 {"aliquot_tag": "ALQ_32c7f3fd", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.RNA-Seq.transcriptome.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.transcriptome.gdc_realn.bam 7472232767 BAM transcriptome harmonized CPTAC3 2d1ad15d-24f2-4350-8be6-13ff37e17077 d4b10e84f635fe59813f01a09338938c {"aliquot_tag": "ALQ_32c7f3fd", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.WGS.Nbc C3L-06981 AML WGS buccal_normal CPT0403380001 CPT0403380001.WholeGenome.RP-2158.bam 51774027262 BAM submitted_aligned CPTAC3 79917886-548c-4d9f-8449-270f8fd12817 b7d1046624fc31dc6288eb6db0cbbfb7 {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06981.WGS.Nbc.hg38 C3L-06981 AML WGS buccal_normal CPT0403380001 4c79c53a-2718-4547-a290-048841fd0614_wgs_gdc_realn.bam 149538484177 BAM harmonized CPTAC3 7ab67fa3-1ce9-4d82-920c-c2e87528b007 b6996b4a4186a97c835ac7cb66e9349d {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06981.WGS.Tpb C3L-06981 AML WGS tumor_peripheral_blood CPT0404530002 CPT0404530002.WholeGenome.RP-2158.bam 46027939419 BAM submitted_aligned CPTAC3 28cda7b6-c518-491a-92f7-18a537a4d526 a4a5145b96f9b69c4bf48657bcb50891 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.WGS.Tpb.hg38 C3L-06981 AML WGS tumor_peripheral_blood CPT0404530002 8f00074a-8287-4c6c-8cff-42c27aac2504_wgs_gdc_realn.bam 135833195776 BAM harmonized CPTAC3 9ec0d8c2-3a7d-4579-b850-91811dc93dfd 25d76e9b674715af46ac5de11b2c5495 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.WXS.Nbc C3L-06981 AML WXS buccal_normal CPT0403380001 CPT0403380001.WholeExome.RP-1303.bam 31985634267 BAM submitted_aligned CPTAC3 147420c9-e671-4284-b55c-c213ff21007f c3516fe041974a47838b41fccf8e2572 {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06981.WXS.Nbc.hg38 C3L-06981 AML WXS buccal_normal CPT0403380001 4c79c53a-2718-4547-a290-048841fd0614_wxs_gdc_realn.bam 43986216038 BAM harmonized CPTAC3 77f8c27e-925e-41f1-b90f-d9045b0e62ff 6962e08de759e39fbbfd7882afe5a2c6 {"aliquot_tag": "ALQ_b5201da5", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06981.WXS.Tpb C3L-06981 AML WXS tumor_peripheral_blood CPT0404530002 CPT0404530002.WholeExome.RP-1303.bam 30729052532 BAM submitted_aligned CPTAC3 c9a78684-4889-4706-ae5e-66988e0c3ae7 f44c041e429f0a77405b890f1e3ffa6a {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06981.WXS.Tpb.hg38 C3L-06981 AML WXS tumor_peripheral_blood CPT0404530002 8f00074a-8287-4c6c-8cff-42c27aac2504_wxs_gdc_realn.bam 43056405894 BAM harmonized CPTAC3 98fcca5b-037d-4c84-b645-694cb68bf00b 7339b81a2694f78eb99d91732ea27c74 {"aliquot_tag": "ALQ_4807a09d", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06982.MethArray.Green.Tpb C3L-06982 AML Methylation_Array tumor_peripheral_blood CPT0404410002 205707890143_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 34111be2-10dc-4704-9ae0-2fcebcc99590 a0dfd8f2007010962557b07cb69a7f2b {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.MethArray.Red.Tpb C3L-06982 AML Methylation_Array tumor_peripheral_blood CPT0404410002 205707890143_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 470adee3-db3c-4ae5-b1b7-5d8e1dc9a29a 79d3da44d194100cb3039d662af04da4 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.miRNA-Seq.S2_L003_R1.Tpb C3L-06982 AML miRNA-Seq tumor_peripheral_blood CPT0404420002 220505_UNC32-K00270_0319_AHMV2KBBXY_CAAAAG_S2_L003_R1_001.unaln.bam 191863960 BAM S2_L003_R1 submitted_unaligned CPTAC3 22695312-0681-458a-941d-d41503e39b0e c079bd6df4686e9c2259bd1aaa04566f {"aliquot_tag": "ALQ_be3b5a88", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.miRNA-Seq.Tpb.hg38 C3L-06982 AML miRNA-Seq tumor_peripheral_blood CPT0404420002 e26133dc-3302-47a4-8889-c68fbeb3418b_mirnaseq_gdc_realn.bam 215984390 BAM harmonized CPTAC3 013be4dc-0814-4ad1-84e9-8987b4ac5924 785c26d9edbdb6cd220e1cbad8b1a7bf {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.RNA-Seq.chimeric.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.chimeric.gdc_realn.bam 662776335 BAM chimeric harmonized CPTAC3 5fcd0d16-b92a-47f8-97b7-7257b6d4ae80 176b5616cda8ba8c67a39ca26713dafd {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.RNA-Seq.genomic.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.genomic.gdc_realn.bam 6920066479 BAM genomic harmonized CPTAC3 2e3c51fa-c9b5-4611-a5bf-ebabbc183fd7 761f17607cea9dbc955c62687e61634b {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.RNA-Seq.S23_L006_R1.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R1_001.fastq.gz 3474697330 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 da3e229b-d868-4f5f-b075-be1171998087 915e62f549c55f9270f57ec862d913f3 {"aliquot_tag": "ALQ_be3b5a88", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.RNA-Seq.S23_L006_R2.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R2_001.fastq.gz 3682404957 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 29246746-6940-47e6-b599-3f13ef906ad9 159a59128cf9c0e5c9001a04f23b32a0 {"aliquot_tag": "ALQ_be3b5a88", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.RNA-Seq.transcriptome.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.transcriptome.gdc_realn.bam 7270094702 BAM transcriptome harmonized CPTAC3 149e633c-0976-40b5-8488-8d382183f5bd a6555fcf5a31f7164e82cd7f11f7e408 {"aliquot_tag": "ALQ_be3b5a88", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.WGS.Nbc C3L-06982 AML WGS buccal_normal CPT0403350001 CPT0403350001.WholeGenome.RP-2158.bam 46684314458 BAM submitted_aligned CPTAC3 f49e23a8-9b21-4874-b42e-3f3bcbf308de b5918769c1d35324a1512f445c20ce44 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06982.WGS.Nbc.hg38 C3L-06982 AML WGS buccal_normal CPT0403350001 121b27dd-434f-47df-9e3e-e161c746cc01_wgs_gdc_realn.bam 136049604152 BAM harmonized CPTAC3 7f6aee43-68f8-4ddb-aded-5a52920ee9d4 0ff3cfeb93139a0d8d19bbc51bed9f16 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06982.WGS.Tpb C3L-06982 AML WGS tumor_peripheral_blood CPT0404410002 CPT0404410002.WholeGenome.RP-2158.bam 50422689910 BAM submitted_aligned CPTAC3 213f491e-94df-46a7-bffb-f949354da880 34f1113140fc37ba83e32d6ca15257f5 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.WGS.Tpb.hg38 C3L-06982 AML WGS tumor_peripheral_blood CPT0404410002 7ef5b7fc-04af-418d-9164-eceda84feba7_wgs_gdc_realn.bam 151091836312 BAM harmonized CPTAC3 1bf7909e-23fb-418e-b3a8-957be0b608ba d0aacf2a8e42e37e7bcee2982afb095c {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.WXS.Nbc C3L-06982 AML WXS buccal_normal CPT0403350001 CPT0403350001.WholeExome.RP-1303.bam 23770460733 BAM submitted_aligned CPTAC3 b1c89d93-d795-40cf-ae61-b2371e550731 bd27425af93f531a377c74e97d1ac3c4 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06982.WXS.Nbc.hg38 C3L-06982 AML WXS buccal_normal CPT0403350001 121b27dd-434f-47df-9e3e-e161c746cc01_wxs_gdc_realn.bam 32601152333 BAM harmonized CPTAC3 1b3e1f0d-f82b-40b7-a91f-cf1a46376849 afc5d58ed88c35c4aca24049ecf30f29 {"aliquot_tag": "ALQ_4db0d914", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06982.WXS.Tpb C3L-06982 AML WXS tumor_peripheral_blood CPT0404410002 CPT0404410002.WholeExome.RP-1303.bam 29613990295 BAM submitted_aligned CPTAC3 45de0859-9f0c-4fc6-abf4-82013e4ed41a 062ce6c8d9a6a91cb6803633c339faa1 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06982.WXS.Tpb.hg38 C3L-06982 AML WXS tumor_peripheral_blood CPT0404410002 7ef5b7fc-04af-418d-9164-eceda84feba7_wxs_gdc_realn.bam 41263998537 BAM harmonized CPTAC3 dde4d746-46a9-41bd-a9df-9e77ce0a2f49 117a34b0c1c8a3ba4453d069956d1bb2 {"aliquot_tag": "ALQ_f99b2058", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06983.MethArray.Green.Tpb C3L-06983 AML Methylation_Array tumor_peripheral_blood CPT0408640002 205987770157_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 60a67d40-e23e-4b1c-9bb4-c9aedd0fd6a1 dffc563a258aef5a08282112c4b1e0b5 {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.MethArray.Red.Tpb C3L-06983 AML Methylation_Array tumor_peripheral_blood CPT0408640002 205987770157_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 14d39412-7c6b-4207-903d-090327d3a5f1 e521690f539c04475d55f4734b1fcb7c {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.miRNA-Seq.S5_L003_R1.Tpb C3L-06983 AML miRNA-Seq tumor_peripheral_blood CPT0408650002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGGCG_S5_L003_R1_001.unaln.bam 263936005 BAM S5_L003_R1 submitted_unaligned CPTAC3 73b39b1a-caa4-4477-9e18-8e7efa093861 9db8eebbc5f91be46ff8eb8db23c4445 {"aliquot_tag": "ALQ_86734de7", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.miRNA-Seq.Tpb.hg38 C3L-06983 AML miRNA-Seq tumor_peripheral_blood CPT0408650002 6c55e645-f645-4514-bd0d-a47e4022b00f_mirnaseq_gdc_realn.bam 289906526 BAM harmonized CPTAC3 a8258068-d94b-4eed-bc2b-43677e8bf342 a1186bbb5cfa49267712919250fc742e {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.RNA-Seq.chimeric.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.chimeric.gdc_realn.bam 512264858 BAM chimeric harmonized CPTAC3 5e256964-5c81-4af4-82af-d8221ffec33c b10acab1df8e133bd9b31a6f87f8436c {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.RNA-Seq.genomic.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.genomic.gdc_realn.bam 7179916641 BAM genomic harmonized CPTAC3 b5fca9d7-8f46-4703-963d-88fe9f1cd1a1 b8e8831863dd6855852e561249db4928 {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.RNA-Seq.S25_L007_R1.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 3740492542 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 26518143-efc1-4a56-aa1e-c242a0f31641 1906e395a4a1964bf8ec45440083ebc2 {"aliquot_tag": "ALQ_86734de7", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.RNA-Seq.S25_L007_R2.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 3943177791 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 4642bc52-9725-4985-98d7-97a3c9ba89f5 7f0e78b662597649016957053fb5ac83 {"aliquot_tag": "ALQ_86734de7", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.RNA-Seq.transcriptome.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.transcriptome.gdc_realn.bam 8323069052 BAM transcriptome harmonized CPTAC3 c64f2ff7-bdd1-4a06-98ef-45db09c9fe24 2037822cd3f00c628b215ac5ceaa11a0 {"aliquot_tag": "ALQ_86734de7", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.WGS.Nbc C3L-06983 AML WGS buccal_normal CPT0408610001 CPT0408610001.WholeGenome.RP-2158.bam 58946812018 BAM submitted_aligned CPTAC3 4a5647d3-8d56-4b44-81ae-0aeb356ec70a 6249e7c5e87d4ac3372e628f8c639f95 {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06983.WGS.Nbc.hg38 C3L-06983 AML WGS buccal_normal CPT0408610001 64b0012c-ff3b-4930-879c-11ad70615533_wgs_gdc_realn.bam 172535418672 BAM harmonized CPTAC3 69d8818f-a69e-4afa-a106-5bcbeece0a49 d31db3447fcf4c04a2aa6dd14b60b93e {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06983.WGS.Tpb C3L-06983 AML WGS tumor_peripheral_blood CPT0408640002 CPT0408640002.WholeGenome.RP-2158.bam 43651351728 BAM submitted_aligned CPTAC3 4cbc9bb3-6efd-4e41-a00d-9dc5bd26cdf9 c1fdb735c7d381e2e6022ea559afe100 {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.WGS.Tpb.hg38 C3L-06983 AML WGS tumor_peripheral_blood CPT0408640002 e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wgs_gdc_realn.bam 132091769285 BAM harmonized CPTAC3 1e2921db-5243-4ee6-8d9b-07ecef59fa12 24d7bee8a728a3cc667ad4afa10ae3b7 {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.WXS.Nbc C3L-06983 AML WXS buccal_normal CPT0408610001 CPT0408610001.WholeExome.RP-1303.bam 25711691906 BAM submitted_aligned CPTAC3 87f37cd9-f411-405b-a754-45b1d785ff5b 9a1b7b543a43a13f4ec61b9d0fafa140 {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06983.WXS.Nbc.hg38 C3L-06983 AML WXS buccal_normal CPT0408610001 64b0012c-ff3b-4930-879c-11ad70615533_wxs_gdc_realn.bam 37245222092 BAM harmonized CPTAC3 65286f62-a5d2-444d-b95f-d650dc8a2f38 ef4737c88010d6d77a64c737ff0925e0 {"aliquot_tag": "ALQ_eafaba9d", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06983.WXS.Tpb C3L-06983 AML WXS tumor_peripheral_blood CPT0408640002 CPT0408640002.WholeExome.RP-1303.bam 24226740827 BAM submitted_aligned CPTAC3 79ed1bca-c9a3-4aad-800f-16033f63b652 92ce5fcd6c3b11b28e378e67e22055ad {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06983.WXS.Tpb.hg38 C3L-06983 AML WXS tumor_peripheral_blood CPT0408640002 e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wxs_gdc_realn.bam 33458404342 BAM harmonized CPTAC3 468b389b-7174-45a6-b3ce-2db7d0c4eca8 f35ba090083c779adcec20f4cfa64b3c {"aliquot_tag": "ALQ_bb136457", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06984.MethArray.Green.Tpb C3L-06984 AML Methylation_Array tumor_peripheral_blood CPT0408880002 205707890036_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 fdf41040-4ef5-4b00-9682-29b85832335c 5efeb9aca6ded1cbca814b07f2e1bc5d {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.MethArray.Red.Tpb C3L-06984 AML Methylation_Array tumor_peripheral_blood CPT0408880002 205707890036_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 731b6909-36eb-421b-8e1f-02905bfd4152 84ce281b8b85c8b98ac0c7431dc51326 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.miRNA-Seq.S4_L003_R1.Tpb C3L-06984 AML miRNA-Seq tumor_peripheral_blood CPT0408890002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACTCA_S4_L003_R1_001.unaln.bam 261397418 BAM S4_L003_R1 submitted_unaligned CPTAC3 01e324ab-cb07-4257-8a74-d0758252f222 05caa0e68becc8be961413f8bf483635 {"aliquot_tag": "ALQ_7989c196", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.miRNA-Seq.Tpb.hg38 C3L-06984 AML miRNA-Seq tumor_peripheral_blood CPT0408890002 3dfd641e-04ef-40fa-b16d-cdf8326f1aea_mirnaseq_gdc_realn.bam 293238380 BAM harmonized CPTAC3 eb2caf85-55bb-4e3f-ad3e-64e02faa0bbf 2ce269753265a719623d5c0dc6370588 {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.RNA-Seq.chimeric.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.chimeric.gdc_realn.bam 660918515 BAM chimeric harmonized CPTAC3 4ed47b0a-954e-43bb-b909-f6bdb58c2fe7 bc669a727d3c46bcd4cf9c608fad3143 {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.RNA-Seq.genomic.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.genomic.gdc_realn.bam 7941234065 BAM genomic harmonized CPTAC3 eaad2437-3ea7-4fb8-9e41-c96bf66dbaa4 78ecf1022c8280eddfef974791b258e6 {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.RNA-Seq.S27_L007_R1.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R1_001.fastq.gz 3897342018 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 c9020348-4ac7-45b2-8b26-0f3600eea6be c093b306674e0a1d60d94ed690b33c95 {"aliquot_tag": "ALQ_7989c196", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.RNA-Seq.S27_L007_R2.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R2_001.fastq.gz 4137799210 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 d80c3794-a9dc-4b1b-8acc-12c57ffbe287 6e16f41969771d4ae81ee98cf509ed4f {"aliquot_tag": "ALQ_7989c196", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.RNA-Seq.transcriptome.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.transcriptome.gdc_realn.bam 8485677822 BAM transcriptome harmonized CPTAC3 99fcf827-b565-44ce-9eb3-944cc3dd7cc1 d97066ca73e05f7400ca7c8b7ba8428c {"aliquot_tag": "ALQ_7989c196", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.WGS.Nbc C3L-06984 AML WGS buccal_normal CPT0408850001 CPT0408850001.WholeGenome.RP-2158.bam 54868221872 BAM submitted_aligned CPTAC3 32329ee0-f040-4c1b-87c1-4899f4f455ba 26afa3791dd669298295c1c08b33c17e {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06984.WGS.Nbc.hg38 C3L-06984 AML WGS buccal_normal CPT0408850001 b0c55a80-01d8-42eb-8047-5299de48ffc8_wgs_gdc_realn.bam 479825047073 BAM harmonized CPTAC3 65b123d9-9d59-4697-82bf-9db318649bb3 d73a5a94482c3d808dd68bad4809547a {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06984.WGS.Tpb C3L-06984 AML WGS tumor_peripheral_blood CPT0408880002 CPT0408880002.WholeGenome.RP-2158.bam 51255855433 BAM submitted_aligned CPTAC3 9a2129d2-dd45-42e9-afc1-c2f76f47948d 95281e57ff87149adc9c7bd4496c2a11 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.WGS.Tpb.hg38 C3L-06984 AML WGS tumor_peripheral_blood CPT0408880002 a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wgs_gdc_realn.bam 155235972975 BAM harmonized CPTAC3 dc89ef04-c297-4432-a134-46486e9e8dcb 1297c26a3c9507d48428d346696a2665 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.WXS.Nbc C3L-06984 AML WXS buccal_normal CPT0408850001 CPT0408850001.WholeExome.RP-1303.bam 16902132775 BAM submitted_aligned CPTAC3 fa5418a5-98fe-4ca8-bb49-bcdd0399d6e7 cdf9700e071f15e086d10001506975fe {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-06984.WXS.Nbc.hg38 C3L-06984 AML WXS buccal_normal CPT0408850001 b0c55a80-01d8-42eb-8047-5299de48ffc8_wxs_gdc_realn.bam 23341344380 BAM harmonized CPTAC3 7810bf2c-1091-45bc-b9e5-9814def4ef7f 7e1980027802e6ebab9f4a915863d815 {"aliquot_tag": "ALQ_25707d2d", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-06984.WXS.Tpb C3L-06984 AML WXS tumor_peripheral_blood CPT0408880002 CPT0408880002.WholeExome.RP-1303.bam 19954273339 BAM submitted_aligned CPTAC3 4736dfe6-8512-4fca-97be-9a273fa9fa9c 45a0432baad43ef032d1c06f4836cfe1 {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-06984.WXS.Tpb.hg38 C3L-06984 AML WXS tumor_peripheral_blood CPT0408880002 a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wxs_gdc_realn.bam 27834661525 BAM harmonized CPTAC3 699aab96-8cd5-480d-8c76-554d4d1a1ba8 ff2d0f6ae0d0864cbdb4024d97b1b43f {"aliquot_tag": "ALQ_44e9e826", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-07012.MethArray.Green.Tbm C3L-07012 AML Methylation_Array tumor_bone_marrow CPT0423540002 205987780101_R02C01_Grn.idat 13677888 IDAT Green NA CPTAC3 d95dfeff-b014-4513-b0b8-193e00312f1b 84271e6e832adff592abd6b9c2188c3a {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.MethArray.Red.Tbm C3L-07012 AML Methylation_Array tumor_bone_marrow CPT0423540002 205987780101_R02C01_Red.idat 13677888 IDAT Red NA CPTAC3 f72d2e9d-be02-4b64-a9d0-37e60c859965 8d024f0dab3da114869404cfdd28822c {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.miRNA-Seq.S39_L002_R1.Tbm C3L-07012 AML miRNA-Seq tumor_bone_marrow CPT0423550002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTGAAA_S39_L002_R1_001.unaln.bam 235075833 BAM S39_L002_R1 submitted_unaligned CPTAC3 a4a4d331-60d0-4739-9e3d-6146c3fe2484 e4fc7081089f5d13ce52a52fc8f02b37 {"aliquot_tag": "ALQ_40c56cce", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.miRNA-Seq.Tbm.hg38 C3L-07012 AML miRNA-Seq tumor_bone_marrow CPT0423550002 66e4b536-8c49-4045-af56-5d7fd1e686c6_mirnaseq_gdc_realn.bam 262654660 BAM harmonized CPTAC3 f2ec02b1-c561-4b1f-a5fb-2411dcf4f582 2ce644cf0fb8799b09f34159fb0dd376 {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.RNA-Seq.chimeric.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.chimeric.gdc_realn.bam 581682620 BAM chimeric harmonized CPTAC3 835b59f6-16e4-4694-9efe-b613382b72b9 3265d81b206d1701b5acb0431650df13 {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.RNA-Seq.genomic.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.genomic.gdc_realn.bam 6864057625 BAM genomic harmonized CPTAC3 f3e8149a-728b-4002-aacb-f008d74e1e12 11fd55b615621f3583c0de42404981ee {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.RNA-Seq.S16_L004_R1.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R1_001.fastq.gz 3467313065 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 bed0b6b6-1024-4b88-9ccd-f4702700ff3f 262af42889c5c7338ef3ad2ced21910d {"aliquot_tag": "ALQ_40c56cce", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.RNA-Seq.S16_L004_R2.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R2_001.fastq.gz 3692173513 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 7b57f8ce-1e4c-4f0d-9d81-370bb7a90774 6efeb34cad24bba2354c6156b49998bf {"aliquot_tag": "ALQ_40c56cce", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.RNA-Seq.transcriptome.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.transcriptome.gdc_realn.bam 7885853369 BAM transcriptome harmonized CPTAC3 c615a597-fe45-4168-93c8-f89bba90ad81 3478d31eedd51f8428b3dcbc5927d55d {"aliquot_tag": "ALQ_40c56cce", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.WGS.Tbm C3L-07012 AML WGS tumor_bone_marrow CPT0423540002 CPT0423540002.WholeGenome.RP-2158.bam 53577776151 BAM submitted_aligned CPTAC3 566f44d4-3504-485d-9299-afb0cf0dafe2 bbb11857af20d22d7fa85aa3ceda471d {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.WGS.Tbm.hg38 C3L-07012 AML WGS tumor_bone_marrow CPT0423540002 43982394-4fd8-4b39-88b0-fd5418fabda9_wgs_gdc_realn.bam 158689114737 BAM harmonized CPTAC3 9d5fa861-1cf3-4965-aacb-3ce82482133f 650e9f9324941a52c13f07ad12b7cb7d {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.WXS.Nbc C3L-07012 AML WXS buccal_normal CPT0423600001 CPT0423600001.WholeExome.RP-1303.bam 23627108151 BAM submitted_aligned CPTAC3 2ed62278-6092-40fb-805a-f47cc0be10ae 6bdc0e9645a53f520d4ca4a61b96f1ef {"aliquot_tag": "ALQ_97b8c0aa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07012.WXS.Nbc.hg38 C3L-07012 AML WXS buccal_normal CPT0423600001 ec411e25-2a11-4cc9-aaea-806a5e34a08d_wxs_gdc_realn.bam 31960837320 BAM harmonized CPTAC3 64e2bdb1-f10f-420d-a03e-60e7d01af376 c8d08f26d7f1694118040e0aa3f142d4 {"aliquot_tag": "ALQ_97b8c0aa", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07012.WXS.Tbm C3L-07012 AML WXS tumor_bone_marrow CPT0423540002 CPT0423540002.WholeExome.RP-1303.bam 30176565344 BAM submitted_aligned CPTAC3 12295d85-7214-4527-bf42-75fd211a8ca0 a842fa8dc630cb5dcc806920a2e64a92 {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07012.WXS.Tbm.hg38 C3L-07012 AML WXS tumor_bone_marrow CPT0423540002 43982394-4fd8-4b39-88b0-fd5418fabda9_wxs_gdc_realn.bam 42024870132 BAM harmonized CPTAC3 6c2f3c3e-b9b1-4215-bece-7fbfaa266226 5105ab890684e1a94e5fed3d5ce9868f {"aliquot_tag": "ALQ_7da5457e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-07013.MethArray.Green.Tbm C3L-07013 AML Methylation_Array tumor_bone_marrow CPT0423640002 205987780101_R06C01_Grn.idat 13677888 IDAT Green NA CPTAC3 1b41e550-2296-40f0-baa3-646304b71e8e ad521768d7541689ccc9bfb71654a34f {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.MethArray.Red.Tbm C3L-07013 AML Methylation_Array tumor_bone_marrow CPT0423640002 205987780101_R06C01_Red.idat 13677888 IDAT Red NA CPTAC3 d1850a58-d8d6-4985-b9db-c7b5fcfe95c3 eda100a14da59279e61e8e2f2d90896e {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.miRNA-Seq.S4_L003_R1.Tbm C3L-07013 AML miRNA-Seq tumor_bone_marrow CPT0423650002 220505_UNC32-K00270_0319_AHMV2KBBXY_CCAACA_S4_L003_R1_001.unaln.bam 170562530 BAM S4_L003_R1 submitted_unaligned CPTAC3 f49a134c-f0f2-4b94-b21a-78747ab82b9b 9ce1e07e2e4486cd6a56cd321024acad {"aliquot_tag": "ALQ_c6511e60", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.miRNA-Seq.Tbm.hg38 C3L-07013 AML miRNA-Seq tumor_bone_marrow CPT0423650002 c86fd7ee-7856-4db7-9a28-44c2e7675f20_mirnaseq_gdc_realn.bam 192126017 BAM harmonized CPTAC3 ce188040-0ad7-4437-9ee9-6372efa2d233 b6a430ccd44d1a7ae06a90597d30be06 {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.RNA-Seq.chimeric.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.chimeric.gdc_realn.bam 74559440 BAM chimeric harmonized CPTAC3 6506be33-e425-4684-9851-eb0f0f9a65ae a6a4e699b4069978eaee57ccc5865a8c {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.RNA-Seq.genomic.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.genomic.gdc_realn.bam 9223432526 BAM genomic harmonized CPTAC3 70d345a0-0a2e-4c75-9920-14c36791d713 6080eaf2f266e2cf64430bf208faf78a {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.RNA-Seq.S14_L004_R1.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3609610481 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3 edcba2beb1192a30c44f5a3a5a3d81cb {"aliquot_tag": "ALQ_c6511e60", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.RNA-Seq.S14_L004_R2.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4145611122 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 1023c6f2-892a-4949-82ec-e92440e8f394 88e6d5177d9b119bd152105d68d25722 {"aliquot_tag": "ALQ_c6511e60", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.RNA-Seq.transcriptome.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.transcriptome.gdc_realn.bam 10802815241 BAM transcriptome harmonized CPTAC3 f3607b78-b2dd-467d-9b56-d496e3a12b92 71eac3593fd9e24cc0228b6128aa2a52 {"aliquot_tag": "ALQ_c6511e60", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.WGS.Nbc C3L-07013 AML WGS buccal_normal CPT0423740001 CPT0423740001.WholeGenome.RP-2158.bam 53990682216 BAM submitted_aligned CPTAC3 f1ccbcd9-f455-42f6-9717-724a3e1fd937 50c8d8976215615346f4259b1c6361ba {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07013.WGS.Nbc.hg38 C3L-07013 AML WGS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wgs_gdc_realn.bam 172603541079 BAM harmonized CPTAC3 998c64c5-cac5-473d-a385-8c99522cf665 7dc465c3ffc3c9f50e73aad70e87b546 {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07013.WGS.Tbm C3L-07013 AML WGS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeGenome.RP-2158.bam 44356654820 BAM submitted_aligned CPTAC3 2efefab3-c73f-4b57-bfa5-4826a4846922 2230a484e4032667baca986fcb00465b {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.WGS.Tbm.hg38 C3L-07013 AML WGS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wgs_gdc_realn.bam 403743062329 BAM harmonized CPTAC3 56965835-c74a-4372-9f42-4bb4fe46ae3a b11d9396fdbbcfa9baa9d1fff92909f8 {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.WXS.Nbc C3L-07013 AML WXS buccal_normal CPT0423740001 CPT0423740001.WholeExome.RP-1303.bam 33334855248 BAM submitted_aligned CPTAC3 82083bb0-d7e4-44ff-bf43-aa968b0c36d2 ae49fcf82f84ca04074247bc07b00913 {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07013.WXS.Nbc.hg38 C3L-07013 AML WXS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wxs_gdc_realn.bam 44977778426 BAM harmonized CPTAC3 6d83953f-9d59-45fd-9f1c-48d917f0efe9 b231d52d4e35190e27c55c85912f43b0 {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07013.WXS.Tbm C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeExome.RP-1303.bam 25242973164 BAM submitted_aligned CPTAC3 796241ec-a38a-4028-b621-343be77994c4 b10f96d90358bc9a98403a9f5b692bb0 {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07013.WXS.Tbm.hg38 C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wxs_gdc_realn.bam 35353671823 BAM harmonized CPTAC3 77b57be8-82b9-4fbd-94cf-cdb1624b219c 8fdf03515b5336f304ca3f5ea4eaa54a {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-07032.RNA-Seq.chimeric.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.chimeric.gdc_realn.bam 63081382 BAM chimeric harmonized CPTAC3 85dfb5f6-65c3-49d5-bb1c-ebfe0dd3809d 18939ebe653af2d687acbe8238c6597f {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07032.RNA-Seq.genomic.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.genomic.gdc_realn.bam 9498612665 BAM genomic harmonized CPTAC3 f465ba1c-3234-48e7-91fd-fc11a79416d2 204a166fec8c019916e24e574a4cc2e4 {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07032.RNA-Seq.S5_L002_R1.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 88ba9750-4977-49cb-9058-c68e1b1b7570 d258562bc158932ff5f7cc321078289d {"aliquot_tag": "ALQ_828862eb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07032.RNA-Seq.S5_L002_R2.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R2_001.fastq.gz 4600968470 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 f37f4fc1-e819-471b-8ad1-0bf07194d51f 4540caa5c0093d8f223c2241ff8d46ed {"aliquot_tag": "ALQ_828862eb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07032.RNA-Seq.transcriptome.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.transcriptome.gdc_realn.bam 12676208890 BAM transcriptome harmonized CPTAC3 5adecd04-1737-49e0-bfec-001b3221dbbd d27822310ed1c5ba531fd0c1c7933b5f {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07033.RNA-Seq.chimeric.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.chimeric.gdc_realn.bam 95552753 BAM chimeric harmonized CPTAC3 5dfc4912-c6c1-4f1c-b736-dc0aad9b6c77 aed82059a6cc51414d26831b52478177 {"aliquot_tag": "ALQ_d8f53a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07033.RNA-Seq.genomic.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.genomic.gdc_realn.bam 10283639041 BAM genomic harmonized CPTAC3 611abacc-4edf-407e-994a-d80476eb9e3a 04ea389f63a0a0ba1c88ca0f5c02adfc {"aliquot_tag": "ALQ_d8f53a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07033.RNA-Seq.S7_L002_R1.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R1_001.fastq.gz 4531104702 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 37537c02-5de7-4494-ae9e-e4e717f391fb 6fac3f865d8c6f5c48359817292329fa {"aliquot_tag": "ALQ_d8f53a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07033.RNA-Seq.S7_L002_R2.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R2_001.fastq.gz 5091753246 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 e074f8ea-87fc-499f-b028-738c12b62cbc 340a21e302db95bcc30b88ce28f9ea4e {"aliquot_tag": "ALQ_d8f53a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07033.RNA-Seq.transcriptome.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.transcriptome.gdc_realn.bam 11228146088 BAM transcriptome harmonized CPTAC3 8c854815-b007-4da4-9157-0e96f03b1376 83a05ef7e8080220373a783529e508d4 {"aliquot_tag": "ALQ_d8f53a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07034.RNA-Seq.chimeric.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.chimeric.gdc_realn.bam 50215892 BAM chimeric harmonized CPTAC3 c2ec24f2-aa4c-42c3-a634-e99ecfc6216b 1acac3b1737ae0b27333877dc1c92444 {"aliquot_tag": "ALQ_865e76fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07034.RNA-Seq.genomic.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.genomic.gdc_realn.bam 7964760572 BAM genomic harmonized CPTAC3 225b0e81-88c7-4d84-8459-bd3b0dbc76be e00eb05264bc097015b4454743afa272 {"aliquot_tag": "ALQ_865e76fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07034.RNA-Seq.S1_L001_R1.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3190444841 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 156bec6c-7178-4b00-8d6b-cb5bae408463 8b459572f95ede52eb1525cb4d56ea45 {"aliquot_tag": "ALQ_865e76fe", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07034.RNA-Seq.S1_L001_R2.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 3715062124 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 d9794500-bac2-45f1-a463-d7e90fa594ab 522f76dcca840f1b285f8d49645ce33c {"aliquot_tag": "ALQ_865e76fe", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07034.RNA-Seq.transcriptome.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.transcriptome.gdc_realn.bam 8924869865 BAM transcriptome harmonized CPTAC3 bbbe5f20-a341-4481-b1c1-94fc13e8cd20 b786fefbbef02f733fc5b56a41eddbb0 {"aliquot_tag": "ALQ_865e76fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07035.RNA-Seq.chimeric.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.chimeric.gdc_realn.bam 65295916 BAM chimeric harmonized CPTAC3 2a0a3519-6ce3-41b1-9e6f-df921c680831 56affd8d1b6b21d3bc600cbf861f2dff {"aliquot_tag": "ALQ_347eaaee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07035.RNA-Seq.genomic.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.genomic.gdc_realn.bam 9866835080 BAM genomic harmonized CPTAC3 ea3f309c-9a48-4e2a-9f23-45aafff8f38b d3a4af107c34ca26100b93812b2a7ef0 {"aliquot_tag": "ALQ_347eaaee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07035.RNA-Seq.S3_L001_R1.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4262833306 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 3a11d2c4-3f6d-4d93-9f48-485afc4059bb 4d52ae28806cb5f03d9a3fff565bda74 {"aliquot_tag": "ALQ_347eaaee", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07035.RNA-Seq.S3_L001_R2.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 4815441455 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 697dbb59-0c83-4289-be41-f3804a391a4d a88b3aa93113bbb9c4a4cd77fb519508 {"aliquot_tag": "ALQ_347eaaee", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07035.RNA-Seq.transcriptome.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.transcriptome.gdc_realn.bam 11670361047 BAM transcriptome harmonized CPTAC3 d977e1d8-59e6-44f9-87c8-9ea9e6bc1c98 30356a19b9cb3290619d31d637029a18 {"aliquot_tag": "ALQ_347eaaee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07036.RNA-Seq.chimeric.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.chimeric.gdc_realn.bam 38980865 BAM chimeric harmonized CPTAC3 cac7da9b-e721-4dc1-8a2c-95017ff3f6c3 d7640fff1a55d6d3d7d95c94e1e94401 {"aliquot_tag": "ALQ_ccee6e5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07036.RNA-Seq.genomic.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.genomic.gdc_realn.bam 7428085529 BAM genomic harmonized CPTAC3 9629a2dd-2a21-4740-a5d5-e231a287a83b 11d29d29987b2f94f4bf8358b8bb6116 {"aliquot_tag": "ALQ_ccee6e5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07036.RNA-Seq.S4_L001_R1.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R1_001.fastq.gz 2990375045 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 f9245412-081c-4289-99fb-475fac2473ee 77bc0dc4f13e87f98f147db6e8484538 {"aliquot_tag": "ALQ_ccee6e5f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07036.RNA-Seq.S4_L001_R2.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R2_001.fastq.gz 3441842587 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 55668996-4f4e-4508-9152-634da507607d 8fe56d9716992ee2594dcac204c8dcb0 {"aliquot_tag": "ALQ_ccee6e5f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07036.RNA-Seq.transcriptome.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.transcriptome.gdc_realn.bam 8898514803 BAM transcriptome harmonized CPTAC3 c8706639-7226-402e-918e-949c0d9e2da5 f3ee1db1d8327e8c61add50f73eaf3ee {"aliquot_tag": "ALQ_ccee6e5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07037.RNA-Seq.chimeric.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.chimeric.gdc_realn.bam 148479090 BAM chimeric harmonized CPTAC3 09881fd9-6ea8-4750-9c99-67c1d52bdd55 c4eafc1f8ff6634c643af78ffa6dbbfc {"aliquot_tag": "ALQ_aa2df8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07037.RNA-Seq.genomic.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.genomic.gdc_realn.bam 9670052249 BAM genomic harmonized CPTAC3 172bbb8c-f105-46ff-80fe-15f78b102bd6 d51e191d781e439fbee8d95d6b2f1f92 {"aliquot_tag": "ALQ_aa2df8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07037.RNA-Seq.S2_L001_R1.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 3399328b-16f5-4c7a-8e1f-338368645ed8 3619b3194ff2aa47564da23b1342f5af {"aliquot_tag": "ALQ_aa2df8b", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07037.RNA-Seq.S2_L001_R2.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 db70a6b8-672d-4a13-bd16-bd52d87843fe 5260fcae215a5f3e074db2f6ad879f33 {"aliquot_tag": "ALQ_aa2df8b", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07037.RNA-Seq.transcriptome.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.transcriptome.gdc_realn.bam 10569505762 BAM transcriptome harmonized CPTAC3 291861f3-2e47-4cac-a807-589bdf58c20c ff694eda7618b8f8c68456fdb8bf244c {"aliquot_tag": "ALQ_aa2df8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07202.MethArray.Green.T C3L-07202 GBM Methylation_Array tumor CPT0407650010 205555390174_R06C01_Grn.idat 13677965 IDAT Green NA CPTAC3 222960f7-20b1-4046-b15e-2511a9aaf42f 851fa7f6e1508cf64bb570adc2048557 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.MethArray.Red.T C3L-07202 GBM Methylation_Array tumor CPT0407650010 205555390174_R06C01_Red.idat 13677965 IDAT Red NA CPTAC3 ceb8a577-4b0b-47d0-a640-a597c25da03b acc01d2fb102ab19fc4536a3acba6e8d {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.miRNA-Seq.S5_L005_R1.T C3L-07202 GBM miRNA-Seq tumor CPT0407650007 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L005_R1_001.unaln.bam 142731958 BAM S5_L005_R1 submitted_unaligned CPTAC3 bafbc425-2aa6-4d3b-9147-84e2537a3d4a e338bb6ee677f9faa5edc4db5b6920cc {"aliquot_tag": "ALQ_51c981", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.miRNA-Seq.T.hg38 C3L-07202 GBM miRNA-Seq tumor CPT0407650007 d7c4d648-fff8-43dd-97ff-71537ed2d14c_mirnaseq_gdc_realn.bam 154494381 BAM harmonized CPTAC3 cfc5cc4f-de57-4f94-aad3-ac48f5b91cbb ce4f52cc408d4bf381ecf0fd005161c5 {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.RNA-Seq.chimeric.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.chimeric.gdc_realn.bam 114492033 BAM chimeric harmonized CPTAC3 6ddab828-389a-4df0-9976-fadf88d02c50 07663b3957a711be254fb646f72f2cfa {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.RNA-Seq.genomic.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.genomic.gdc_realn.bam 10126285337 BAM genomic harmonized CPTAC3 f419ef07-3477-4e9c-8703-cdf75eabe2d3 6aa3288b96ce7998bc609795b81700a2 {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.RNA-Seq.S76_L008_R1.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R1_001.fastq.gz 4673354416 FASTQ S76_L008_R1 submitted_unaligned CPTAC3 0d2a4b38-4741-48ac-bd06-58e5a7397594 e82c52d02676bcbb56a568fffa3f772f {"aliquot_tag": "ALQ_51c981", "sample": "S76", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.RNA-Seq.S76_L008_R2.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R2_001.fastq.gz 5307823033 FASTQ S76_L008_R2 submitted_unaligned CPTAC3 9e0f8f05-b887-4c26-b196-f8d137d04b38 5d1fa7779b06858b0283cd8da4719654 {"aliquot_tag": "ALQ_51c981", "sample": "S76", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.RNA-Seq.transcriptome.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.transcriptome.gdc_realn.bam 7634470702 BAM transcriptome harmonized CPTAC3 54a12723-d77b-45ee-8cfa-09701fa5727e 2bc72732ae62f3b41bd3fdb70bb46560 {"aliquot_tag": "ALQ_51c981", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.WGS.N C3L-07202 GBM WGS blood_normal CPT0408730002 CPT0408730002.WholeGenome.RP-2158.bam 23879461295 BAM submitted_aligned CPTAC3 be5343f5-50ec-4556-826f-2f78a7c3fb88 9100f533d568e96f096d78f6f7f18fb9 {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07202.WGS.N.hg38 C3L-07202 GBM WGS blood_normal CPT0408730002 9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wgs_gdc_realn.bam 68922636729 BAM harmonized CPTAC3 e8e293fc-c8ca-4cc8-809a-18ff04d36c91 df2f21b209e3f56ddf00dd90f02425ea {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07202.WGS.T C3L-07202 GBM WGS tumor CPT0407650010 CPT0407650010.WholeGenome.RP-2158.bam 22112867784 BAM submitted_aligned CPTAC3 bd7ee9e2-1221-4100-b46b-746fee3ffcc5 9c6fdcb1d1682c8b368d37b615056b62 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.WGS.T.hg38 C3L-07202 GBM WGS tumor CPT0407650010 ce1dba67-d732-46e3-9e72-096f6f0b75b9_wgs_gdc_realn.bam 62842632255 BAM harmonized CPTAC3 27664a4a-b413-4602-a67e-2f168c52e22a c91eaaaf08dca52d74650c405135bfd1 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.WXS.N C3L-07202 GBM WXS blood_normal CPT0408730002 CPT0408730002.WholeExome.RP-1303.bam 26749694695 BAM submitted_aligned CPTAC3 9cfa2645-0420-4d57-a7e6-0fba83c81c42 1d1d3b858788097bf01e13127d930116 {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07202.WXS.N.hg38 C3L-07202 GBM WXS blood_normal CPT0408730002 9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wxs_gdc_realn.bam 36976133990 BAM harmonized CPTAC3 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed f43c63d1055e4876cbf61e4b74f5109c {"aliquot_tag": "ALQ_c26f6be2", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-07202.WXS.T C3L-07202 GBM WXS tumor CPT0407650010 CPT0407650010.WholeExome.RP-1303.bam 25141500331 BAM submitted_aligned CPTAC3 08c3554c-d4d2-4e22-a091-2a8a22a88d90 eca21478e7eed4dcfe81c924247d563f {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07202.WXS.T.hg38 C3L-07202 GBM WXS tumor CPT0407650010 ce1dba67-d732-46e3-9e72-096f6f0b75b9_wxs_gdc_realn.bam 35323200367 BAM harmonized CPTAC3 5c4c8930-d564-4e1a-97bd-5971d536af18 d33bd559600876512b74d4a51a654079 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-07212.MethArray.Green.T C3L-07212 LGG Methylation_Array tumor CPT0447560012 206250290178_R01C01_Grn.idat 13677942 IDAT Green NA CPTAC3 4f08cfbd-be2d-4a50-b19b-e1b22347033d bf4dad83e8e006bbe9e2d55985973d85 {"aliquot_tag": "ALQ_2c5e0acb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07212.MethArray.Red.T C3L-07212 LGG Methylation_Array tumor CPT0447560012 206250290178_R01C01_Red.idat 13677942 IDAT Red NA CPTAC3 8e8b37a3-d0f9-41da-a850-2baf9643d279 dc45b12943ecb40ace61cdc1f7ff1143 {"aliquot_tag": "ALQ_2c5e0acb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07212.miRNA-Seq.S6_L003_R1.T C3L-07212 LGG miRNA-Seq tumor CPT0447560007 220505_UNC32-K00270_0319_AHMV2KBBXY_CTAGCT_S6_L003_R1_001.unaln.bam 310872045 BAM S6_L003_R1 submitted_unaligned CPTAC3 e44650c7-2e73-4786-bb16-e7a3d837fe16 06345681442ce851c00904871d0a65ba {"aliquot_tag": "ALQ_452fcf05", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07212.miRNA-Seq.T.hg38 C3L-07212 LGG miRNA-Seq tumor CPT0447560007 deca3f1a-5e78-4c28-a713-60d30337a896_mirnaseq_gdc_realn.bam 343046530 BAM harmonized CPTAC3 72a1c78c-d3bc-4888-9875-03abdddc0ea8 b908081b3c2c700bf492f17005d6ce0b {"aliquot_tag": "ALQ_452fcf05", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-07212.RNA-Seq.genomic.T.hg38 C3L-07212 LGG RNA-Seq tumor CPT0447560007 99d94a22-d7a8-4761-83cb-efb10f02b555.rna_seq.genomic.gdc_realn.bam 2116258222 BAM genomic harmonized CPTAC3 1d6d9931-9d25-4a05-8a03-8eb55cb2e3f7 407ef490f950e1c8fe1e39e5c9afd3f3 {"aliquot_tag": "ALQ_452fcf05", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-07212.RNA-Seq.S3_L006_R1.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R1_001.fastq.gz 2006897789 FASTQ S3_L006_R1 submitted_unaligned CPTAC3 93b39fb7-26e7-4e70-9145-726cd8868b5b eb2c1e2b53c14f292b2fc9e2dc637a97 {"aliquot_tag": "ALQ_452fcf05", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07212.RNA-Seq.S3_L006_R2.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R2_001.fastq.gz 2105896279 FASTQ S3_L006_R2 submitted_unaligned CPTAC3 ec4877da-dfc4-4a6a-ac9c-5500fa56ba2c fa90596fa5a4ff3fb26b3750a624bb09 {"aliquot_tag": "ALQ_452fcf05", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-07212.WGS.N C3L-07212 LGG WGS blood_normal CPT0447490001 CPT0447490001.WholeGenome.RP-2158.bam 59771375114 BAM submitted_aligned CPTAC3 b5d0da29-0fbe-4a40-b814-025b6c7e872b 00ac381510523f28795ad33298a331fb {"aliquot_tag": "ALQ_e5402e44", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-07213.MethArray.Green.T C3L-07213 GBM Methylation_Array tumor CPT0407970010 205555390176_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ed6a2433-0756-4efa-8a10-cec2fcb27e88 6a00a334c1c3fb59edcc99068255357a {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.MethArray.Red.T C3L-07213 GBM Methylation_Array tumor CPT0407970010 205555390176_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 4a399bb5-ed14-4a50-818d-c651f6d48540 944f68e32368dd49aabda726d93d9349 {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.miRNA-Seq.S1_L005_R1.T C3L-07213 GBM miRNA-Seq tumor CPT0407970007 210702_UNC32-K00270_0289_AHKJ22BBXY_ACAGTG_S1_L005_R1_001.unaln.bam 169566636 BAM S1_L005_R1 submitted_unaligned CPTAC3 c43fded4-9ae9-4cbf-a391-af4b6106e8ba c6f3be2e9f3230493bb570c6860624da {"aliquot_tag": "ALQ_8bc72834", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.miRNA-Seq.T.hg38 C3L-07213 GBM miRNA-Seq tumor CPT0407970007 cda0b09b-05f5-49aa-8e3b-80f5c3aee1b3_mirnaseq_gdc_realn.bam 187401409 BAM harmonized CPTAC3 a1639b74-3562-478a-8463-6555ba8d5e03 aaf15c7b45f9df5b5104116dff8aa78e {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.RNA-Seq.chimeric.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.chimeric.gdc_realn.bam 240962729 BAM chimeric harmonized CPTAC3 220c39b5-995b-4c50-8931-c7ba2c067575 d5eb8c042b13e4de5459598f2d4adf0e {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.RNA-Seq.genomic.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.genomic.gdc_realn.bam 7216907422 BAM genomic harmonized CPTAC3 002571e9-bcdb-4e21-8cd1-674eacf7a304 5c1446684f29279eb927ac3d2842fbad {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.RNA-Seq.S78_L008_R1.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R1_001.fastq.gz 3214110588 FASTQ S78_L008_R1 submitted_unaligned CPTAC3 a3414943-3507-49d3-8c9f-c50c7721b209 52e32e039bd1e7d38bdf56b0caa6aba6 {"aliquot_tag": "ALQ_8bc72834", "sample": "S78", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.RNA-Seq.S78_L008_R2.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R2_001.fastq.gz 3605214139 FASTQ S78_L008_R2 submitted_unaligned CPTAC3 ea6ad82f-b787-4ee4-820c-f4b30dd9d61c 2ed49fc0b52d4696bd12b25b301bf532 {"aliquot_tag": "ALQ_8bc72834", "sample": "S78", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.RNA-Seq.transcriptome.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.transcriptome.gdc_realn.bam 9480278292 BAM transcriptome harmonized CPTAC3 dff98336-a851-4761-96ee-eda889fc11db 85a1b5685c3fc9cd159931ff928d42b8 {"aliquot_tag": "ALQ_8bc72834", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.WGS.N C3L-07213 GBM WGS blood_normal CPT0408780002 CPT0408780002.WholeGenome.RP-2158.bam 30606188785 BAM submitted_aligned CPTAC3 e552b00d-62c3-4105-9e2a-4a8eff730bbb 2f54659e838ba4f02267c2f33d4061fb {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07213.WGS.N.hg38 C3L-07213 GBM WGS blood_normal CPT0408780002 64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wgs_gdc_realn.bam 89161123615 BAM harmonized CPTAC3 81f5956f-4df7-41d9-be6e-af59c628b6dd 40358538f8ff0ce10f2133cc96ebb15f {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07213.WGS.T C3L-07213 GBM WGS tumor CPT0407970010 CPT0407970010.WholeGenome.RP-2158.bam 21192425543 BAM submitted_aligned CPTAC3 512018cc-6dda-4966-acea-7e5655cbde7a 41d024de9790e2c2ec537be59394c81f {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.WGS.T.hg38 C3L-07213 GBM WGS tumor CPT0407970010 63cdc123-6efd-4d15-a5cb-4c8205b9eefe_wgs_gdc_realn.bam 61671193861 BAM harmonized CPTAC3 50f5310c-72b0-4d41-a8ce-6f4b370c351e 82e7b9ec1fed2cd76dd218d8e05de5db {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.WXS.N C3L-07213 GBM WXS blood_normal CPT0408780002 CPT0408780002.WholeExome.RP-1303.bam 24378992351 BAM submitted_aligned CPTAC3 2e4ad5e7-fe94-4252-a927-7e60bfbddf0d d911326b5b171c6419aadbeb648e5e08 {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07213.WXS.N.hg38 C3L-07213 GBM WXS blood_normal CPT0408780002 64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wxs_gdc_realn.bam 33733613698 BAM harmonized CPTAC3 51e744f3-1253-44bf-9b98-c26271785d96 89a1d2abef0098d5327c5c1867a7a021 {"aliquot_tag": "ALQ_b5bf5af3", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-07213.WXS.T C3L-07213 GBM WXS tumor CPT0407970010 CPT0407970010.WholeExome.RP-1303.bam 20738364712 BAM submitted_aligned CPTAC3 6b215bb0-a079-4c59-b74a-c3263ccfe118 d439fc8ec39f00ed358af66486156027 {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07213.WXS.T.hg38 C3L-07213 GBM WXS tumor CPT0407970010 63cdc123-6efd-4d15-a5cb-4c8205b9eefe_wxs_gdc_realn.bam 29144496069 BAM harmonized CPTAC3 57461fc1-881f-4b14-9c8c-6c795a225e1f 266f6416e51d889a2a09c0e4d9fcec86 {"aliquot_tag": "ALQ_cb88cd6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-07437.MethArray.Green.Tpb C3L-07437 AML Methylation_Array tumor_peripheral_blood CPT0409210002 205707890143_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a926175e-eaba-4889-8836-e503b5e7a535 98140d8c4b398f06dbcf387eeccc78b5 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.MethArray.Red.Tpb C3L-07437 AML Methylation_Array tumor_peripheral_blood CPT0409210002 205707890143_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 4f06c41e-e122-4312-adb4-8a76617dc698 cfcbe061f9d3745d271290f999accdfe {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.miRNA-Seq.S7_L003_R1.Tpb C3L-07437 AML miRNA-Seq tumor_peripheral_blood CPT0409220002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATTTT_S7_L003_R1_001.unaln.bam 281880782 BAM S7_L003_R1 submitted_unaligned CPTAC3 8f930cdf-c82c-4e0a-ab86-e8bb1ee6f85b d1559341ca7d433c80a8e36a51d133bd {"aliquot_tag": "ALQ_9b5d855", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.miRNA-Seq.Tpb.hg38 C3L-07437 AML miRNA-Seq tumor_peripheral_blood CPT0409220002 984401a7-3608-414c-83e0-ae1619671d9b_mirnaseq_gdc_realn.bam 311512296 BAM harmonized CPTAC3 f03e52d6-48b6-4ee5-9980-1759dd42fadc f8a48ec133bfe79c63cbe9a22b393653 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.RNA-Seq.chimeric.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.chimeric.gdc_realn.bam 600809012 BAM chimeric harmonized CPTAC3 45f0b16b-2fb9-473b-bc50-51cc1518eaf5 9a3ea8b28025503a09e5a4146a40e400 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.RNA-Seq.genomic.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.genomic.gdc_realn.bam 7644508104 BAM genomic harmonized CPTAC3 31d49634-483a-4442-96ff-f9c8d1b6d782 c6a25ca6e98ddcf4c5e7307b4663ae30 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.RNA-Seq.S30_L008_R1.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 3625194988 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 19f81621-5e25-4547-9d95-f56513c37ea3 51d969a9c428c5660e899c95c0f4d897 {"aliquot_tag": "ALQ_9b5d855", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.RNA-Seq.S30_L008_R2.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4118264722 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 37df23e8-805f-4e27-85cd-dc39f8570266 ba3caa02727d2b1e462a915fa4f3373f {"aliquot_tag": "ALQ_9b5d855", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.RNA-Seq.transcriptome.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.transcriptome.gdc_realn.bam 8559938700 BAM transcriptome harmonized CPTAC3 97a8a541-c560-4d7f-a5ca-c6b667e19e37 95cc45e1e88f1729c68f4cd20a62f221 {"aliquot_tag": "ALQ_9b5d855", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.WGS.Nbc C3L-07437 AML WGS buccal_normal CPT0409180001 CPT0409180001.WholeGenome.RP-2158.bam 44608274877 BAM submitted_aligned CPTAC3 7a9c3765-7f33-47f9-a9e1-818c230385c0 8ab7f49e31d4ce076a041409c9586b1f {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07437.WGS.Nbc.hg38 C3L-07437 AML WGS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wgs_gdc_realn.bam 133771417041 BAM harmonized CPTAC3 7f2b71bd-804b-4dbb-9d74-3539784d34e4 00cf53e76531fa5ddc0d2a7a70843c51 {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07437.WGS.Tpb C3L-07437 AML WGS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeGenome.RP-2158.bam 62735180275 BAM submitted_aligned CPTAC3 8230713e-1203-45ad-bc5e-288baeef2eb7 c25964a23dc48cdb346425663c7bdab6 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.WGS.Tpb.hg38 C3L-07437 AML WGS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wgs_gdc_realn.bam 184732398408 BAM harmonized CPTAC3 b8a63078-67cb-4929-afe2-4ab723ea9327 0c6be709aa13b3f1bccf1ab1c7cd4bfa {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.WXS.Nbc C3L-07437 AML WXS buccal_normal CPT0409180001 CPT0409180001.WholeExome.RP-1303.bam 29530926162 BAM submitted_aligned CPTAC3 9004ddec-1d9b-4675-89e8-42c856e6bdea edf4fceefe20165b24f6b6ea284d92cf {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07437.WXS.Nbc.hg38 C3L-07437 AML WXS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wxs_gdc_realn.bam 39957535150 BAM harmonized CPTAC3 2d79233e-307d-4835-b070-47feba860d01 e724ce4313c17ac322eab79b779a608d {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07437.WXS.Tpb C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeExome.RP-1303.bam 26091082341 BAM submitted_aligned CPTAC3 b620a304-20ec-44c8-adf0-6770dae68220 1913d52199f8e6e125716d0ecb3b2a45 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07437.WXS.Tpb.hg38 C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wxs_gdc_realn.bam 36014507825 BAM harmonized CPTAC3 c030fb7f-77a4-4c1f-8a7e-06a6f91bef61 0aeed95744a8951c7e479c2e73f779f8 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-07439.MethArray.Green.Tpb C3L-07439 AML Methylation_Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 65eebb3e-2e03-41b2-824a-4d1a730a879e cc0da6c18aae8761eceb026dc0c0c63a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.MethArray.Red.Tpb C3L-07439 AML Methylation_Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 24467b3c-6531-47aa-bcbf-9161bf286e16 77c0e440730e5be3d02b29c9ac9fd342 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.miRNA-Seq.S6_L003_R1.Tpb C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L003_R1_001.unaln.bam 188685033 BAM S6_L003_R1 submitted_unaligned CPTAC3 0d92688a-ace0-45e7-927e-256c262d8216 ef67e9ab1fbe0f329b17e02f9bbb2fad {"aliquot_tag": "ALQ_a098480", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.miRNA-Seq.Tpb.hg38 C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 61124569-679a-4853-b053-5ea1d2aa3fa7_mirnaseq_gdc_realn.bam 210846683 BAM harmonized CPTAC3 5c742f42-1883-4f6b-8a87-957cdae95ac3 1dcb39c80237ae840a5f28f0abdf5c29 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.RNA-Seq.chimeric.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.chimeric.gdc_realn.bam 434731531 BAM chimeric harmonized CPTAC3 0454cd0a-6cb5-4452-9cfe-4df9d3b93c23 4cd2bea4903622a62ff10ce0d2fdd826 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.RNA-Seq.genomic.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.genomic.gdc_realn.bam 7018682144 BAM genomic harmonized CPTAC3 1031f657-e8f4-4efd-84ac-cc2b00760f72 4637c11bae0a826ea6a4529136ddd821 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.RNA-Seq.S28_L007_R1.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R1_001.fastq.gz 3579652035 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 8506fcf0-4ced-4a2a-90ed-878fa8d0f751 e227210cee8b5ee711424c484e438d59 {"aliquot_tag": "ALQ_a098480", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.RNA-Seq.S28_L007_R2.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R2_001.fastq.gz 3786729975 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 691147a6-204e-4cfc-acf0-16b432c7ed3d debd56e893ccbdd446174d46084c590a {"aliquot_tag": "ALQ_a098480", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.RNA-Seq.transcriptome.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.transcriptome.gdc_realn.bam 9872199459 BAM transcriptome harmonized CPTAC3 ee730d3f-1803-41fd-b4bd-a876db038534 2b5a1477dd9800955ae184995b53e0e7 {"aliquot_tag": "ALQ_a098480", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.WGS.Nbc C3L-07439 AML WGS buccal_normal CPT0409330001 CPT0409330001.WholeGenome.RP-2158.bam 52560119755 BAM submitted_aligned CPTAC3 1c203f7a-5a16-4c05-a9d1-4afbeb1d2b17 34dde5a5ec15f7a47340ef8d0f7ce3e3 {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07439.WGS.Nbc.hg38 C3L-07439 AML WGS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wgs_gdc_realn.bam 154859851406 BAM harmonized CPTAC3 8f38803a-d993-4cf9-a78b-121bb76b10d0 8e0f23d7cbf6ce53147d052dbe772b63 {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07439.WGS.Tpb C3L-07439 AML WGS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeGenome.RP-2158.bam 50005341006 BAM submitted_aligned CPTAC3 b1c9ca06-e545-4be0-b6fd-57a9d5cc8221 f8156680b0d406d407871f72e6b8ae0a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.WGS.Tpb.hg38 C3L-07439 AML WGS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wgs_gdc_realn.bam 149168323555 BAM harmonized CPTAC3 e8607566-c0aa-40a6-9b90-263e0ab072b1 3b014e27c6ca6296220af36d2a394454 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.WXS.Nbc C3L-07439 AML WXS buccal_normal CPT0409330001 CPT0409330001.WholeExome.RP-1303.bam 24435246882 BAM submitted_aligned CPTAC3 9cd320ff-ce98-4e17-a6bb-b5f3bf9083dc 023bcdee9f921f67b701c86599d487d7 {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07439.WXS.Nbc.hg38 C3L-07439 AML WXS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wxs_gdc_realn.bam 85771065654 BAM harmonized CPTAC3 eed05d67-1bf7-436f-bfdb-b07dd6beb964 74e3e5d9c7c8ebf919257fe2ece95f1a {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07439.WXS.Tpb C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeExome.RP-1303.bam 24945939921 BAM submitted_aligned CPTAC3 57f58bb4-54c3-4331-a72d-67a0561eca98 07756efe1f1a96dcbb254fa31679d464 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3L-07439.WXS.Tpb.hg38 C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wxs_gdc_realn.bam 34896018172 BAM harmonized CPTAC3 c2f2bdfe-749a-4ba2-bd39-fee94d5b2e30 2d1784670cc5931edb214cbbaeb5810a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-07490.MethArray.Green.Tbm C3L-07490 AML Methylation_Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7a2f2d6b-a7d4-4b18-a5a4-63f485025570 7d0de35217e92d2f28cc11844581632c {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.MethArray.Red.Tbm C3L-07490 AML Methylation_Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 f359d895-7a5b-4c09-809d-9cbdc63a8128 0add2784f43acd747a1c410199aaf597 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.miRNA-Seq.S29_L005_R1.Tbm C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACTCA_S29_L005_R1_001.unaln.bam 179381519 BAM S29_L005_R1 submitted_unaligned CPTAC3 f13a0eae-a044-4414-acd2-81068f92f0f9 786e8aa16cc7c57f58ddb68b19435b9a {"aliquot_tag": "ALQ_5fb3f2e0", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.miRNA-Seq.Tbm.hg38 C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 496ed66a-2355-47eb-ad9d-5cda0397c7b2_mirnaseq_gdc_realn.bam 188896528 BAM harmonized CPTAC3 fbbe1717-1692-4530-8b49-15b51c269402 6a216adaa4afc4e988de2b2653c3a5e7 {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.RNA-Seq.chimeric.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.chimeric.gdc_realn.bam 194098252 BAM chimeric harmonized CPTAC3 b56723a7-2346-4c81-9fdb-5864fdf000ab 5191a90760624cd2d17126b84827e962 {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.RNA-Seq.genomic.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.genomic.gdc_realn.bam 8865670253 BAM genomic harmonized CPTAC3 deb0c477-4194-44c3-9ffc-79e0d217c575 136573030310ec67b99213822cab529d {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.RNA-Seq.S4_L001_R1.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 3720404856 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 2ebf6805-a5c8-43d5-8fee-730861c13580 36710ec306d9ad0ea4f63310d0a2c82c {"aliquot_tag": "ALQ_5fb3f2e0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.RNA-Seq.S4_L001_R2.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4031405226 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 3215eaf9-a581-4e1b-b71b-3c96b7876cba 6cfa1b63a61ae91cb2e3548fc6150c44 {"aliquot_tag": "ALQ_5fb3f2e0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.RNA-Seq.transcriptome.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.transcriptome.gdc_realn.bam 8061105399 BAM transcriptome harmonized CPTAC3 28c27d89-b22d-4c04-af02-c3688367cac7 d9209bd1c4d5887bb3858e48f4741be5 {"aliquot_tag": "ALQ_5fb3f2e0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.WGS.Nbc C3L-07490 AML WGS buccal_normal CPT0413320001 CPT0413320001.WholeGenome.RP-2158.bam 69601657577 BAM submitted_aligned CPTAC3 16a35b27-7141-41ab-914a-0c546541377f 2f915bf176d1f04ca062f5e074d48d6f {"aliquot_tag": "ALQ_333a059a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07490.WGS.Nbc.hg38 C3L-07490 AML WGS buccal_normal CPT0413320001 c502ce9b-dc6f-4707-bfdb-b16ec51de8b9_wgs_gdc_realn.bam 203974244131 BAM harmonized CPTAC3 6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d 5ab45898c09355f64da1c18a69a13b32 {"aliquot_tag": "ALQ_333a059a", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07490.WGS.Tbm C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeGenome.RP-2158.bam 60421758045 BAM submitted_aligned CPTAC3 b9149ef7-4087-44d7-9c74-1ef27aedebf2 156144d24680b3a44d6af733262ba486 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.WGS.Tbm.hg38 C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wgs_gdc_realn.bam 176588748562 BAM harmonized CPTAC3 036102b0-a019-45e8-b9db-ea99632f6ad5 88ab345a94fb82932718332995380a61 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.WXS.Tbm C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeExome.RP-1303.bam 30811613444 BAM submitted_aligned CPTAC3 3d1cd92b-4657-496a-a287-0dbbe1b08799 0f1f3f851f7cf4b9a41a67b19fb85d44 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07490.WXS.Tbm.hg38 C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wxs_gdc_realn.bam 42160884574 BAM harmonized CPTAC3 1931582d-980b-4481-b433-4f97b84e40ea ce5d9ec24792eddb3f2d295b03c0d329 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-07611.MethArray.Green.T C3L-07611 GBM Methylation_Array tumor CPT0408500007 204930640111_R05C01_Grn.idat 13677956 IDAT Green NA CPTAC3 a80351fb-be92-4aae-9b24-8c2e2370af27 9fdf36237e405087ed3636a0d0f03061 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.MethArray.Red.T C3L-07611 GBM Methylation_Array tumor CPT0408500007 204930640111_R05C01_Red.idat 13677956 IDAT Red NA CPTAC3 400527c0-c3b5-46c0-a60e-1cb3f76ee084 87564f3c61ba792f87175c055cefec8d {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.miRNA-Seq.S37_L005_R1.T C3L-07611 GBM miRNA-Seq tumor CPT0408500010 210702_UNC32-K00270_0289_AHKJ22BBXY_TCATTC_S37_L005_R1_001.unaln.bam 204155380 BAM S37_L005_R1 submitted_unaligned CPTAC3 c4abe2f9-b7a8-4da2-a185-9be4ff656788 0dc4074a99e2737514957892bcc88998 {"aliquot_tag": "ALQ_3f12e054", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.miRNA-Seq.T.hg38 C3L-07611 GBM miRNA-Seq tumor CPT0408500010 bef3b046-b164-4256-b897-72cddd0633fd_mirnaseq_gdc_realn.bam 221187925 BAM harmonized CPTAC3 070bcd79-11ca-4b65-8a39-3e9bdafb6d57 ab46278cef78fb338a44918383058034 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.RNA-Seq.chimeric.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.chimeric.gdc_realn.bam 228015781 BAM chimeric harmonized CPTAC3 afc0c0bf-c7b3-41e5-a155-36220c735099 7a2a110f50a191cf69320bacdd6ac793 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.RNA-Seq.genomic.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.genomic.gdc_realn.bam 8082724853 BAM genomic harmonized CPTAC3 2b301d6a-175a-42f8-a550-0f2ed137d045 e3d6db89e56b5f6e34d1523782dcc6f3 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.RNA-Seq.S14_L004_R1.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R1_001.fastq.gz 3891845626 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 a19a4590-1bba-4407-8833-4c424dbd4e7a c0d3e2e4ca88dabd470de07dcca9c6ad {"aliquot_tag": "ALQ_3f12e054", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.RNA-Seq.S14_L004_R2.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R2_001.fastq.gz 4019885625 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 715c0803-92be-4427-84a0-318fb948c958 76da8036d9027f6f9f0e7d3e494e6f43 {"aliquot_tag": "ALQ_3f12e054", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.RNA-Seq.transcriptome.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.transcriptome.gdc_realn.bam 10683144478 BAM transcriptome harmonized CPTAC3 48976778-bb2a-42d5-a0b0-7181f43c358b c741ceb6bcd83743ec6c525c636457f8 {"aliquot_tag": "ALQ_3f12e054", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.WGS.N C3L-07611 GBM WGS blood_normal CPT0408580002 CPT0408580002.WholeGenome.RP-2158.bam 29383404617 BAM submitted_aligned CPTAC3 1679fa71-9071-4fbd-935a-f4e78426660b 6fa1d2f9df253583fabfacdd1b670953 {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07611.WGS.N.hg38 C3L-07611 GBM WGS blood_normal CPT0408580002 3c805b24-a57c-4477-996b-927a7fe9ccb2_wgs_gdc_realn.bam 86255744603 BAM harmonized CPTAC3 0ef89055-e885-438d-9e05-f60f89725367 dafb20f5b916b858ac33e2cfe5a7fd9e {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07611.WGS.T C3L-07611 GBM WGS tumor CPT0408500007 CPT0408500007.WholeGenome.RP-2158.bam 26632148378 BAM submitted_aligned CPTAC3 89f9ad5f-5d86-4051-a85d-38d4aadfa686 4acdaaf5e23081f50d9e79cbb351672d {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.WGS.T.hg38 C3L-07611 GBM WGS tumor CPT0408500007 f135e074-b46a-473b-8015-439c78e8f6fd_wgs_gdc_realn.bam 77090269449 BAM harmonized CPTAC3 c86ee9c9-faff-49f4-b731-53751cc80228 5b73a27fd33f83b4707f78b35fcb4721 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.WXS.N C3L-07611 GBM WXS blood_normal CPT0408580002 CPT0408580002.WholeExome.RP-1303.bam 26865804794 BAM submitted_aligned CPTAC3 1b7849bc-141f-4fcd-9d8e-050d04c9d724 e7a0db6a290e4173d0dbcf555889ba28 {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-07611.WXS.N.hg38 C3L-07611 GBM WXS blood_normal CPT0408580002 3c805b24-a57c-4477-996b-927a7fe9ccb2_wxs_gdc_realn.bam 37940973867 BAM harmonized CPTAC3 49d7c1cf-db69-41a6-9cbb-88f382ced875 9e26d5e9e2d06f36221e8cbccc43c222 {"aliquot_tag": "ALQ_f877fbf8", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3L-07611.WXS.T C3L-07611 GBM WXS tumor CPT0408500007 CPT0408500007.WholeExome.RP-1303.bam 22260035637 BAM submitted_aligned CPTAC3 9eb37687-fdb1-4d97-8fe5-2a7a374d3395 317a4d5c2dd08fd1b7abd302e4b4be75 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-07611.WXS.T.hg38 C3L-07611 GBM WXS tumor CPT0408500007 f135e074-b46a-473b-8015-439c78e8f6fd_wxs_gdc_realn.bam 30995726684 BAM harmonized CPTAC3 66ea66b9-4620-4c09-a59d-f9b1c0bcb09f eb067415cf8805b6c6c4ac02bd46a229 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00148.DUP_495404aa.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081590009 204367490043_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f6eaed9e-16f0-4b1f-bb96-86a35c644127 7b1e7d7c0280478b32bcb2bdcac4ce1e {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_495404aa.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081590009 204367490043_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 955ef901-2188-49a2-9201-11cd2f8094f9 514408ecda95e0797ad307ad65f000fc {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_495404aa.WGS.T C3N-00148 CCRCC WGS tumor CPT0081590009 CPT0081590009.WholeGenome.RP-2158.bam 25242046375 BAM submitted_aligned CPTAC3 ab8ca6d2-61be-4af8-816c-818a37171bf1 3916d1d0dee49702870a63f9b69062a1 {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_495404aa.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081590009 0dfc5413-c20e-46bf-ab76-de56b5d3dca5_wgs_gdc_realn.bam 75073168317 BAM harmonized CPTAC3 9689fb7a-0f95-48ad-bff0-31e7e7575ac8 08fdbcb23865926a106bd41dda5136a0 {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_495404aa.WXS.T C3N-00148 CCRCC WXS tumor CPT0081590009 CPT0081590009.WholeExome.RP-1303.bam 20136824575 BAM submitted_aligned CPTAC3 987fe07e-a3ec-4fb4-9d93-a5ecc6cb2bc4 b198817b9fcafad57d886accb495581e {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_495404aa.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081590009 0dfc5413-c20e-46bf-ab76-de56b5d3dca5_wxs_gdc_realn.bam 27529117609 BAM harmonized CPTAC3 ec8dc2c4-9a8a-4a55-b90b-2129c54b50ab 39bd60ec04f5e9ef10546367a0c79c23 {"aliquot_tag": "DUP_495404aa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_6f0f2054.miRNA-Seq.S27_L004_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081610006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L004_R1_001.unaln.bam 216922501 BAM S27_L004_R1 submitted_unaligned CPTAC3 27fa6e25-69ea-46ca-9d7d-bcf6a2cbdd94 0a6a241e6c4a5de5a6600c00af5c611a {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_6f0f2054.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081610006 780ece72-1465-41f6-a95c-950293545921_mirnaseq_gdc_realn.bam 239179433 BAM harmonized CPTAC3 f0b9a47a-cbf6-4d99-b530-1c2d327e5870 97cb701680cfd1bb04722e8bb8dc7d3a {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_6f0f2054.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.chimeric.gdc_realn.bam 239976045 BAM chimeric harmonized CPTAC3 bf8e68bb-33c6-4c97-b478-287d5e144347 4adba2658d6139efa92e3c90c5cae44a {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_6f0f2054.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.genomic.gdc_realn.bam 8145058930 BAM genomic harmonized CPTAC3 cfd59fcc-314a-4f0f-97c2-e616dfd333db 5bebb95258cfca7db5a1790e2bfd932e {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_6f0f2054.RNA-Seq.S14_L004_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R1_001.fastq.gz 3701454243 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 2cdd2b94-10a0-41f6-adb6-6aa717245a40 9924a42947b6c3472d5f50694af315ba {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_6f0f2054.RNA-Seq.S14_L004_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R2_001.fastq.gz 4536249627 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 65c1a61a-ffe3-4e34-96cd-1d5452ce0d90 4a6b49a51f18efb2389b4353ca8f6a10 {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_6f0f2054.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.transcriptome.gdc_realn.bam 9183359665 BAM transcriptome harmonized CPTAC3 cd2d42b3-6e41-473d-b0d9-bbc88406fda2 8744d924e151c968596601160a04a0df {"aliquot_tag": "DUP_6f0f2054", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_74342d1a.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081580009 204367490093_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 54703a27-f4ab-4cbb-adea-1242035925df 800143be9a968c84f9d92ac57de70c9e {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_74342d1a.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081580009 204367490093_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 ecd429b3-fc1c-4671-959e-8775ec4cef9e 768948b32510a948e28b36e35d3b7064 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_74342d1a.WGS.T C3N-00148 CCRCC WGS tumor CPT0081580009 CPT0081580009.WholeGenome.RP-2158.bam 24499415520 BAM submitted_aligned CPTAC3 5aa8822e-a5f9-455c-857c-58faa6f0fd23 b94b83026bf941c3e6901104dbc87254 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_74342d1a.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081580009 9173e932-91db-4aef-9728-85f813c5952b_wgs_gdc_realn.bam 70146064208 BAM harmonized CPTAC3 5b2869e8-677e-4903-967b-e577ac7858cc 17afc1248f14e4cb68da6ee1c1ddadf0 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_74342d1a.WXS.T C3N-00148 CCRCC WXS tumor CPT0081580009 CPT0081580009.WholeExome.RP-1303.bam 22292381417 BAM submitted_aligned CPTAC3 0c1e685a-15ac-4e2f-9201-0fe227c1982c 48a555371c45269507a9bf0967284081 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_74342d1a.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081580009 9173e932-91db-4aef-9728-85f813c5952b_wxs_gdc_realn.bam 30594843788 BAM harmonized CPTAC3 93ecd7a4-8e8d-47dc-9d87-16b77cc7b3e3 39b2246fc22750a1bba7c6ecbfd28188 {"aliquot_tag": "DUP_74342d1a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_d9eb193b.miRNA-Seq.S4_L004_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081590006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGGCG_S4_L004_R1_001.unaln.bam 215706607 BAM S4_L004_R1 submitted_unaligned CPTAC3 cb9a8508-6510-457a-9740-817831f8215e da3de1bf56ceb1edf0227b625c8fa00e {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_d9eb193b.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081590006 70f8e422-e31d-41a0-bfa3-394b48225d0a_mirnaseq_gdc_realn.bam 240358408 BAM harmonized CPTAC3 f1e0d5e7-652c-4a33-815a-ede62c3adc24 50a328154c46927e0406c92ed8328d14 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_d9eb193b.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.chimeric.gdc_realn.bam 104693658 BAM chimeric harmonized CPTAC3 b73d90e9-9991-4dc7-a566-a3b4aac42daf 523a6509997118051f87c7f964ba47a7 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_d9eb193b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.genomic.gdc_realn.bam 8633244917 BAM genomic harmonized CPTAC3 c44c6ab8-4038-4ef3-838c-5e8e1900e46c e8f91bfc13415f291f6dc453c869aa67 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_d9eb193b.RNA-Seq.S16_L004_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R1_001.fastq.gz 4104332900 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 76502b9a-7e4d-4688-a0e9-18f695e7e2b8 7896a34089af26f5ed636b70ad92942d {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_d9eb193b.RNA-Seq.S16_L004_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R2_001.fastq.gz 4888105949 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 7872472a-affb-433b-bf1f-b492058828bb 21cee91f1d499b83ec5b4cd7018c7429 {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_d9eb193b.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.transcriptome.gdc_realn.bam 10437458004 BAM transcriptome harmonized CPTAC3 c1767a7a-1d5f-4e56-8e58-3094d04010f4 74e8c015930c3006b246f1140278b46a {"aliquot_tag": "DUP_d9eb193b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_e48b308b.miRNA-Seq.S26_L004_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081580006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L004_R1_001.unaln.bam 164986231 BAM S26_L004_R1 submitted_unaligned CPTAC3 f8ac9419-3f47-4dbf-8714-3d727d046dfa ebbb608ec5a7e0342dd3b109e33d51bf {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_e48b308b.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081580006 80022834-d392-4fad-87e1-9576956c251a_mirnaseq_gdc_realn.bam 183335413 BAM harmonized CPTAC3 7195daa7-87e9-4605-b25c-42c6eb4c25cc 71ba9392a17ddae2b92e161db91ace1b {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_e48b308b.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.chimeric.gdc_realn.bam 188406815 BAM chimeric harmonized CPTAC3 28738bf5-afef-48ef-a16c-496004dd90cc 961a327119c3a1fa75a6134b3ab468d6 {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_e48b308b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.genomic.gdc_realn.bam 7438515443 BAM genomic harmonized CPTAC3 fdfb1f33-afb6-47a3-b22c-0349706b3081 5065adef1cc0154b0ed8ee12ae0297ae {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_e48b308b.RNA-Seq.S9_L003_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R1_001.fastq.gz 3662990781 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 7057f456-2a17-45fc-9ef7-15142e833631 1c2a6f305f7a8fb8ed2e8d30384b8dad {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_e48b308b.RNA-Seq.S9_L003_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R2_001.fastq.gz 4251757262 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 2932e604-2fe0-4aa2-90c6-186a4dd73334 217797df8e6e03870969e86d1c8f222c {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_e48b308b.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.transcriptome.gdc_realn.bam 8864829953 BAM transcriptome harmonized CPTAC3 7d82691a-95a8-4c89-acc4-6444c65fd505 e7ecdb0ce758e916eb2472fb663fb7a2 {"aliquot_tag": "DUP_e48b308b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_ffb03dc5.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081610009 204372030072_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 605b2e6a-941f-4a09-80f6-682edbc8f380 bba8f29840919317560eea073116ea5a {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_ffb03dc5.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081610009 204372030072_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 67dcaa43-600e-4513-aa8a-fa39dab8a129 bf7b5c2619bec65d9412abbded9e54b5 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_ffb03dc5.WGS.T C3N-00148 CCRCC WGS tumor CPT0081610009 CPT0081610009.WholeGenome.RP-2158.bam 28213591174 BAM submitted_aligned CPTAC3 e6fdbe37-f822-4327-b81d-6b63abce7ba9 b7a6fdee2e10968ba17b00b6a74bfae3 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_ffb03dc5.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081610009 c3d0c798-3921-4d07-b355-d0c56d3e85c0_wgs_gdc_realn.bam 83772692900 BAM harmonized CPTAC3 b106741d-59eb-42e6-b699-1d03231ca80b bfdf466248bd3fad3f9025ec4342cc5c {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_ffb03dc5.WXS.T C3N-00148 CCRCC WXS tumor CPT0081610009 CPT0081610009.WholeExome.RP-1303.bam 19983518553 BAM submitted_aligned CPTAC3 89eaab6f-c051-4a36-884e-210ed6c8d634 525610f47e30c22c5b97857492103ce3 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.DUP_ffb03dc5.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081610009 c3d0c798-3921-4d07-b355-d0c56d3e85c0_wxs_gdc_realn.bam 27495571703 BAM harmonized CPTAC3 d736f758-647e-489d-a681-79ab73116e88 53968f386dbb0fd69f750bbe78ce8798 {"aliquot_tag": "DUP_ffb03dc5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.MethArray.Green.A C3N-00148 CCRCC Methylation_Array tissue_normal CPT0081620009 204930640108_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b135529e-c8bd-4e20-b709-e0f75e944676 eeee135c2ec8870e31127474ccb32694 {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.MethArray.Green.T C3N-00148 CCRCC Methylation_Array tumor CPT0081600006 202184900104_R08C01_Grn.idat 13676256 IDAT Green NA CPTAC3 3fa87ccb-2393-4f48-957e-812d6cad2eae f5b972e9afbe16aa6f5ca0485164161c {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.MethArray.Red.A C3N-00148 CCRCC Methylation_Array tissue_normal CPT0081620009 204930640108_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 51ab0091-4cf0-4820-8a4c-b064364c9dae b001cbbb15cc6a44614b771f165acee1 {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.MethArray.Red.T C3N-00148 CCRCC Methylation_Array tumor CPT0081600006 202184900104_R08C01_Red.idat 13676256 IDAT Red NA CPTAC3 42e7346d-ce99-406c-bef4-2fa6bc79f095 8c63db95d4c260d7d84567deac4a55af {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.miRNA-Seq.A.hg38 C3N-00148 CCRCC miRNA-Seq tissue_normal CPT0081620006 35ae3dd2-7236-46b7-9c39-f112ca2d561e_mirnaseq_gdc_realn.bam 209797587 BAM harmonized CPTAC3 9a5c3a2c-bc30-4bce-8087-d1a1094c0e5a b0af324d569b1dabf91495f66b35ddf7 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.miRNA-Seq.S26_L002_R1.A C3N-00148 CCRCC miRNA-Seq tissue_normal CPT0081620006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L002_R1_001.unaln.bam 189924824 BAM S26_L002_R1 submitted_unaligned CPTAC3 5df9e78b-e37d-4284-9eed-64a9a6166eeb aaaae05a8aa1c7ed7a0e7fab6942316e {"aliquot_tag": "ALQ_28af5a84", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.miRNA-Seq.S5_L006_R1.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081600009 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L006_R1_001.unaln.bam 236100123 BAM S5_L006_R1 submitted_unaligned CPTAC3 3a781daf-e927-4eae-8a82-bea66bf67dc2 607655795bbb9c385bc10f93c84c6159 {"aliquot_tag": "ALQ_c2d01475", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081600009 c0ee240d-4281-41a6-aa8f-00226c6e33b5_mirnaseq_gdc_realn.bam 261759217 BAM harmonized CPTAC3 3ee5325a-4b5d-4317-906a-6b5eaab4edd0 9338f7f7e790234fe0a3c08f24e75026 {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.RNA-Seq.chimeric.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.chimeric.gdc_realn.bam 65294643 BAM chimeric harmonized CPTAC3 d9986361-69c1-45fe-94d6-b78b908b9813 eac3cac502ec27bdec6ad75c3c69dc43 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.chimeric.gdc_realn.bam 53975736 BAM chimeric harmonized CPTAC3 6cbcff00-af84-41fc-acaa-0381e791aabe 797251f3904d20455d6ee67f812bf379 {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.RNA-Seq.genomic.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.genomic.gdc_realn.bam 9264727882 BAM genomic harmonized CPTAC3 2859d494-26d1-4f93-9a1e-c5adc3a3a66d 68019d3113994a2bdf4072d01dfa43d1 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.genomic.gdc_realn.bam 9902160939 BAM genomic harmonized CPTAC3 9f86ce00-fc2e-4662-800d-05ebab6e5141 6b547d5e9f77bdd76b3674c8867d332d {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.RNA-Seq.S1_L001_R1.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R1_001.fastq.gz 4500742385 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 e8912d94-cb0d-43a9-8162-74cfaa687f6b 56a7d6c797c120c031572aef5a4fcba5 {"aliquot_tag": "ALQ_28af5a84", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.RNA-Seq.S1_L001_R2.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R2_001.fastq.gz 4876089984 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 295e5db0-2734-4385-9867-95978059c72f 9ae22a8d40033409dcbe25b579632123 {"aliquot_tag": "ALQ_28af5a84", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.RNA-Seq.S6_L008_R1.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R1_001.fastq.gz 4810717249 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 48e2576c-57dd-4e80-8362-7c35daed4204 53542237cb90bbc646ab391435e12226 {"aliquot_tag": "ALQ_c2d01475", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.RNA-Seq.S6_L008_R2.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R2_001.fastq.gz 5280330533 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 a250f5fc-fc5b-45e1-83b7-9139dd06398e d32f84107b3454e1642c3f1086758ffe {"aliquot_tag": "ALQ_c2d01475", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.RNA-Seq.transcriptome.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.transcriptome.gdc_realn.bam 10951576023 BAM transcriptome harmonized CPTAC3 13cb4e22-9a20-4388-98cc-3ada22a9da32 7271f6584cef2c827ea323d40c6a8216 {"aliquot_tag": "ALQ_28af5a84", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.transcriptome.gdc_realn.bam 11528905049 BAM transcriptome harmonized CPTAC3 00ef0669-e3d9-4c02-9af3-903455dbe859 8fa11d2752df6897beebb629f5534990 {"aliquot_tag": "ALQ_c2d01475", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S3_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R1_001.fastq.gz 4545417676 FASTQ S3_L003_R1 submitted_unaligned CPTAC3 b1b10e79-2b1d-4ef8-8b36-4be8f69f0a7c 77a44cb98278eb1e53fad6714265d20d {"aliquot_tag": "ALQ_8dfaf545", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S3_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R2_001.fastq.gz 16324750458 FASTQ S3_L003_R2 submitted_unaligned CPTAC3 517b282d-1f91-4d37-999f-1a86d84f466e 3de0b535ea35934be411ce1560cf6108 {"aliquot_tag": "ALQ_8dfaf545", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S4_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R1_001.fastq.gz 4782641146 FASTQ S4_L003_R1 submitted_unaligned CPTAC3 bab6b2bb-f08e-45ba-adc4-f83638a80b5d 47789ffcf6f9ad3d24374fea0ab7b0b9 {"aliquot_tag": "ALQ_b09adcf5", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S4_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R1_001.fastq.gz 3116857723 FASTQ S4_L003_R1 submitted_unaligned CPTAC3 bdd0aafc-9de4-4cec-8e78-cf1a61c1503b 87d03f41f948a011ec5fc43888af57eb {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S4_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R2_001.fastq.gz 16876236863 FASTQ S4_L003_R2 submitted_unaligned CPTAC3 ab2879e7-a26c-451b-a94f-ad7b54c9e92c c52018aef4dfab26ae0330adf446d1a9 {"aliquot_tag": "ALQ_b09adcf5", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00148.scRNA-Seq.S4_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R2_001.fastq.gz 11002906348 FASTQ S4_L003_R2 submitted_unaligned CPTAC3 cc04ff73-6900-4928-885c-552cd8b11b7a f86593168fe72dca9765a868dc1a8c81 {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S5_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R1_001.fastq.gz 3266690810 FASTQ S5_L003_R1 submitted_unaligned CPTAC3 5e058d5d-614b-4f75-bd9b-f9e623f25bb2 0aa4d1a32c688d5bcc404abaf1a449c0 {"aliquot_tag": "ALQ_67ee59a", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S5_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R2_001.fastq.gz 11520663145 FASTQ S5_L003_R2 submitted_unaligned CPTAC3 e6457d1b-b66c-4681-8420-6c1bb80e92d9 6741a5271692a91db8769147ecc40dd7 {"aliquot_tag": "ALQ_67ee59a", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S7_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R1_001.fastq.gz 2226966916 FASTQ S7_L003_R1 submitted_unaligned CPTAC3 946d0aa0-3574-4d02-839f-78b2b5d40fa8 3823391e1de4b50664c40d7b1290db8a {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S7_L003_R1.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R1_001.fastq.gz 2729330431 FASTQ S7_L003_R1 submitted_unaligned CPTAC3 6973e83e-2258-438b-8930-1cc7149ec62a 7abd0e4e16bfb8a6bdb94d8f599d6aeb {"aliquot_tag": "ALQ_67ee59a", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S7_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R2_001.fastq.gz 7808630322 FASTQ S7_L003_R2 submitted_unaligned CPTAC3 aff0b02f-54c3-477b-b378-b16b561f59b9 7c9001db35aa622bc9073f145fd2cbb5 {"aliquot_tag": "ALQ_3b1ecc2a", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.S7_L003_R2.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R2_001.fastq.gz 9553422581 FASTQ S7_L003_R2 submitted_unaligned CPTAC3 92e4f7f5-2dd1-4901-ac67-00de1bdb01dc 6c126ccff34770454566b3416fd48b7a {"aliquot_tag": "ALQ_67ee59a", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.T.hg38 C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 possorted_genome_bam.bam 15610409845 BAM harmonized CPTAC3 b906eb6f-4951-4eeb-b675-cf4b5d643636 2db25b379f94469c92f6a9bb289bf58c {"aliquot_tag": "ALQ_8dfaf545", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.T.hg38 C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 possorted_genome_bam.bam 18740378119 BAM harmonized CPTAC3 c86ee747-701e-4410-bc3c-0ca2b8aa707d 4828460752fb291d68c75401db3ba9e8 {"aliquot_tag": "ALQ_3b1ecc2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.scRNA-Seq.T.hg38 C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 possorted_genome_bam.bam 21212833137 BAM harmonized CPTAC3 2a61eb5f-66a1-447f-a659-5f722d248098 cb1b5ddff26013cb3683b986bf9ee5c1 {"aliquot_tag": "ALQ_67ee59a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.WGS.A C3N-00148 CCRCC WGS tissue_normal CPT0081620009 CPT0081620009.WholeGenome.RP-1303.bam 53860588095 BAM submitted_aligned CPTAC3 5bdf214f-fa22-4a94-94f2-87bf6021505f e81f87af060d1bb9bd72c3497d907bac {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.WGS.A.hg38 C3N-00148 CCRCC WGS tissue_normal CPT0081620009 03f3a930-23ac-4022-a180-7eddf513f3a6_wgs_gdc_realn.bam 78288422049 BAM harmonized CPTAC3 31226045-9a66-42b4-bfef-6e2b3eec8b23 8a0f887ce5c33652a03dba9e2c98b5ca {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.WGS.N C3N-00148 CCRCC WGS blood_normal CPT0081700002 CPT0081700002.WholeGenome.RP-1303.bam 89652895870 BAM submitted_aligned CPTAC3 3ca1f926-6bb2-47ba-a820-86a3663e1f76 e34f27ed633e3f654d52d9c1478e5b21 {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00148.WGS.N.hg38 C3N-00148 CCRCC WGS blood_normal CPT0081700002 925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 137507958986 BAM harmonized CPTAC3 aeb1deff-af9c-4977-8b98-e3ebfc0653bd a8cac6f0aef671c7ca85be8006f2b22f {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00148.WGS.T C3N-00148 CCRCC WGS tumor CPT0081600006 CPT0081600006.WholeGenome.RP-1303.bam 77317662300 BAM submitted_aligned CPTAC3 a895a77c-a125-4733-baa4-59cade0faedb 20392a262d08f9191128a2d749ce5e30 {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.WGS.T.hg38 C3N-00148 CCRCC WGS tumor CPT0081600006 127293c3-8feb-4aa1-8f52-1461eeff35ca_gdc_realn.bam 116233772122 BAM harmonized CPTAC3 521f64b0-af2c-46ca-915d-2b4d563b744d 430468b61397fc993764cc178a0ce7b2 {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.WXS.A C3N-00148 CCRCC WXS tissue_normal CPT0081620009 CPT0081620009.WholeExome.RP-1303.bam 38811714661 BAM submitted_aligned CPTAC3 273c20bd-8048-42bc-9e81-1114f09e9c07 cd6a42aa2829c35a4a456970a7212c4c {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.WXS.A.hg38 C3N-00148 CCRCC WXS tissue_normal CPT0081620009 03f3a930-23ac-4022-a180-7eddf513f3a6_wxs_gdc_realn.bam 52704436616 BAM harmonized CPTAC3 4ab5a44a-7587-489f-98af-b649d5501bdf 9118f3f0250e7453e618b6784d275e91 {"aliquot_tag": "ALQ_b8104715", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00148.WXS.N C3N-00148 CCRCC WXS blood_normal CPT0081700002 CPT0081700002.WholeExome.RP-1303.bam 33961808473 BAM submitted_aligned CPTAC3 d6f5f349-2db3-4d20-a6b3-108495eedfd6 040101c3d5583522d9272338a0ccbc63 {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00148.WXS.N.hg38 C3N-00148 CCRCC WXS blood_normal CPT0081700002 925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 45883027420 BAM harmonized CPTAC3 06dcff89-4b72-4e25-ac00-9f8ad4f4a30c 11255bc3d065f34081ce52e3c6edf80e {"aliquot_tag": "ALQ_9e5e1e58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00148.WXS.T C3N-00148 CCRCC WXS tumor CPT0081600006 CPT0081600006.WholeExome.RP-1303.bam 31418941646 BAM submitted_aligned CPTAC3 30b16a42-d46d-4732-8aa6-f6b69a3cae21 43f34ceb0be6050937fcd876274c09cb {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00148.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081600006 127293c3-8feb-4aa1-8f52-1461eeff35ca_gdc_realn.bam 43598251608 BAM harmonized CPTAC3 d32aed5c-6bb2-47ac-aa60-98df1b7e2472 ecc3474437ba7cec7fa07f76c7953f20 {"aliquot_tag": "ALQ_526f09e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_260c02bd.MethArray.Green.T C3N-00149 CCRCC Methylation_Array tumor CPT0084580009 204367470132_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 21afa015-4a00-48b7-a31d-185b6f371928 e2b9ff39cc675d0b903dd9f3867a6dac {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_260c02bd.MethArray.Red.T C3N-00149 CCRCC Methylation_Array tumor CPT0084580009 204367470132_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 457c04a5-d5d7-4f23-a7f0-ca37269ab5d3 77ca5c88421f16a49db89b4ea0c5f0f3 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_260c02bd.WGS.T C3N-00149 CCRCC WGS tumor CPT0084580009 CPT0084580009.WholeGenome.RP-2158.bam 21996898179 BAM submitted_aligned CPTAC3 7ace4ebf-0177-4724-91f6-30995af8205a f7ec47661a2345986faa2cd2b1a6a357 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_260c02bd.WGS.T.hg38 C3N-00149 CCRCC WGS tumor CPT0084580009 20edbb55-6868-4cd4-a52e-39f17635dba4_wgs_gdc_realn.bam 63280894348 BAM harmonized CPTAC3 d19e6fca-046a-437d-a1e4-081d234a3eb6 a7b0a508ed5bf3112ea85fbb1312da17 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_260c02bd.WXS.T C3N-00149 CCRCC WXS tumor CPT0084580009 CPT0084580009.WholeExome.RP-1303.bam 18528240964 BAM submitted_aligned CPTAC3 2f17ad73-8799-4852-a1fd-7585c06107ac f07be156f9d1862cce1195390e34558b {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_260c02bd.WXS.T.hg38 C3N-00149 CCRCC WXS tumor CPT0084580009 20edbb55-6868-4cd4-a52e-39f17635dba4_wxs_gdc_realn.bam 25579475038 BAM harmonized CPTAC3 b6511fa6-00ee-4f91-a4d0-006f9a4f3a85 c841caee4353535adea196176642e687 {"aliquot_tag": "DUP_260c02bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_34e388fd.miRNA-Seq.S8_L004_R1.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084570006 200526_UNC32-K00270_0248_BHH7WFBBXY_CGGAAT_S8_L004_R1_001.unaln.bam 330404915 BAM S8_L004_R1 submitted_unaligned CPTAC3 8a2931ef-421e-42ac-bbf9-94d569db08a5 7f1c76c59a2d6a45f1765b14949a0fed {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_34e388fd.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084570006 fc7bba3f-2f0c-4018-9151-89102e0a4eea_mirnaseq_gdc_realn.bam 370132285 BAM harmonized CPTAC3 c7641f78-88a8-4e1f-8ae3-0b693deaf8e5 485b219f3614dcd9b7996246c3f482ed {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_34e388fd.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.chimeric.gdc_realn.bam 109963027 BAM chimeric harmonized CPTAC3 92a4ee01-22a9-4a0c-9946-64e983830079 4fff1bf93efc7a50ea3b87055739a265 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_34e388fd.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.genomic.gdc_realn.bam 7814489885 BAM genomic harmonized CPTAC3 658d81fb-0482-4ebe-9527-e435b595e440 a5957d05e1fcf22b8de80163bcd959ba {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_34e388fd.RNA-Seq.S20_L005_R1.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R1_001.fastq.gz 3537365441 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 a941166b-5b56-45e2-98a7-59ba41c85957 d6e972b9667a9e42eafb4217d701aa22 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_34e388fd.RNA-Seq.S20_L005_R2.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R2_001.fastq.gz 4166328187 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 0e99e57d-7be8-4722-a1ae-215713fd506f 62e5c31066a9e21e98ac3545bfe80dd3 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_34e388fd.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.transcriptome.gdc_realn.bam 10097879509 BAM transcriptome harmonized CPTAC3 58b067dd-c134-43e0-93cc-c23246f8bab0 606d20275892789effb625e4ba2a1c50 {"aliquot_tag": "DUP_34e388fd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_a45c956c.MethArray.Green.T C3N-00149 CCRCC Methylation_Array tumor CPT0084570009 204372030076_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 0ff762c9-d7a3-47f8-953a-81430771e8f0 c069f60d771e7fe26a53bd988ecf6cb9 {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_a45c956c.MethArray.Red.T C3N-00149 CCRCC Methylation_Array tumor CPT0084570009 204372030076_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 c7d35b4c-1e53-4824-ae3c-37e3020b3e33 ac1ecb29b32ce90dc7406d9d0af51a5f {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_a45c956c.WGS.T C3N-00149 CCRCC WGS tumor CPT0084570009 CPT0084570009.WholeGenome.RP-2158.bam 19609031492 BAM submitted_aligned CPTAC3 1b1d8360-7d32-4e05-907d-6797ff51629c 6e627fc4ed4aa14f9d3b28c29e644649 {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_a45c956c.WGS.T.hg38 C3N-00149 CCRCC WGS tumor CPT0084570009 e85fb411-a7ef-49d9-accf-9bcec1ab0ce3_wgs_gdc_realn.bam 58057287596 BAM harmonized CPTAC3 fc8459a4-c8dc-45de-9462-a520cefe1528 4ff660071b75cb58622cd96f52fb9b03 {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_a45c956c.WXS.T C3N-00149 CCRCC WXS tumor CPT0084570009 CPT0084570009.WholeExome.RP-1303.bam 18290571011 BAM submitted_aligned CPTAC3 9035160e-ba85-49dc-b7cf-fb1761262982 0d0d2b2d1282e63168b5dcbe6accac2b {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_a45c956c.WXS.T.hg38 C3N-00149 CCRCC WXS tumor CPT0084570009 e85fb411-a7ef-49d9-accf-9bcec1ab0ce3_wxs_gdc_realn.bam 25912868980 BAM harmonized CPTAC3 2d1ccfc8-06f4-48f9-a989-bcde1128da7a 7357e193da4fcb962dc45b57e6d28eda {"aliquot_tag": "DUP_a45c956c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_b6b31f2c.miRNA-Seq.S9_L004_R1.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084580006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTAGCT_S9_L004_R1_001.unaln.bam 318693839 BAM S9_L004_R1 submitted_unaligned CPTAC3 b9a93c6b-f991-4e3e-8626-5bbfcb6f9273 2d74b520f604398621dd245262ffba45 {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_b6b31f2c.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084580006 6e5d393b-e8b9-4cc2-9af9-49a8e788f999_mirnaseq_gdc_realn.bam 356038430 BAM harmonized CPTAC3 ea7ee412-e9cc-4cb7-a7dd-063f3123d527 0946dea241955bfed519700cb0893435 {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_b6b31f2c.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.chimeric.gdc_realn.bam 94514545 BAM chimeric harmonized CPTAC3 34a16e12-056f-4c8d-948f-6873571049db 9e5633c551a4fcc3e6033cb73767d34a {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_b6b31f2c.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.genomic.gdc_realn.bam 7190867923 BAM genomic harmonized CPTAC3 e57f6056-3f91-43d7-928e-92e204e88aa0 b78bdc723a3f79fdbcd2d76d3aee41da {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_b6b31f2c.RNA-Seq.S18_L005_R1.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3375429210 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 2ac76f97-64f6-4a49-9e87-9ec850b6c55e 5d6c45a89c9362b7c2bc0733b3233710 {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_b6b31f2c.RNA-Seq.S18_L005_R2.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 3945741454 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 5aee2bb7-8d0c-4980-b9df-40433e73cc3f bfcf7c8f719fba82d6feabcd5b7a29ac {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.DUP_b6b31f2c.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.transcriptome.gdc_realn.bam 10169109557 BAM transcriptome harmonized CPTAC3 7ced6022-57a1-4a87-a670-d654d311d514 1492d75c3f50caac3d75b54199adc6ee {"aliquot_tag": "DUP_b6b31f2c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.MethArray.Green.A C3N-00149 CCRCC Methylation_Array tissue_normal CPT0084590009 203027390029_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2793cf05-30f8-4d1b-829d-509897c0d575 85e107535ad64b642b89eb144fa8b80d {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.MethArray.Green.T C3N-00149 CCRCC Methylation_Array tumor CPT0084560006 202178770079_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 80169744-b1d4-4c40-9866-0e729f87393b 4b4b05eb4a7d58b8ef9e43522baeaca0 {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.MethArray.Red.A C3N-00149 CCRCC Methylation_Array tissue_normal CPT0084590009 203027390029_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 c237d6fd-ff1b-452d-9f43-487d768ac621 a7919a5778cdf2c9116267ed6fdd99b2 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.MethArray.Red.T C3N-00149 CCRCC Methylation_Array tumor CPT0084560006 202178770079_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 f1603619-a19a-4ee4-bbd3-886751f75e87 401217fc35847fed9b171d454ee9902a {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.miRNA-Seq.A.hg38 C3N-00149 CCRCC miRNA-Seq tissue_normal CPT0084590006 1ead3637-2a71-456d-b24f-46da4fb3a548_mirnaseq_gdc_realn.bam 214076525 BAM harmonized CPTAC3 4d7eea8c-4797-4b26-9e1b-af52e9fd56d2 c6978a2caed8af7708a0742a19c7a55b {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.miRNA-Seq.S28_L002_R1.A C3N-00149 CCRCC miRNA-Seq tissue_normal CPT0084590006 181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L002_R1_001.unaln.bam 191321196 BAM S28_L002_R1 submitted_unaligned CPTAC3 e87ec9ab-d4df-4060-bf22-ecebd32049f3 f5bb1b76a4eee3ab1fe799fc807ab8b7 {"aliquot_tag": "ALQ_8bd3369c", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.miRNA-Seq.S47_L002_R1.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084560009 181113_UNC31-K00269_0164_AH23NNBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 244767996 BAM S47_L002_R1 submitted_unaligned CPTAC3 372f3c62-16b3-4c5c-8f61-3ec462e46012 70027cabb8b7888056fd15df9d15cecb {"aliquot_tag": "ALQ_993cbcdc", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084560009 f7325567-72f5-4bfd-9092-8d1a694ad776_mirnaseq_gdc_realn.bam 273626726 BAM harmonized CPTAC3 db0418ce-4ae3-452a-9357-cc869c1599a5 095fea1800d388260770fa9b1126c763 {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.RNA-Seq.chimeric.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.chimeric.gdc_realn.bam 54032070 BAM chimeric harmonized CPTAC3 4c9bca31-2d25-4626-a02f-dbf0c8dd2406 67ab61d09741bd68a847596ad9829592 {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.chimeric.gdc_realn.bam 40233606 BAM chimeric harmonized CPTAC3 d70c6e68-c49a-4367-acda-9061fcf66de8 c68857fe7e1ee1234fc658bd464dd193 {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.RNA-Seq.genomic.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.genomic.gdc_realn.bam 5839944203 BAM genomic harmonized CPTAC3 7b8f8c25-340e-4331-9d9c-dc7a638ed81f 0a59d7b672c72b685b261c0c6e4fbf0c {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.genomic.gdc_realn.bam 11332026360 BAM genomic harmonized CPTAC3 0dffe6f5-f453-4dda-b54e-3dd33d8c550b 2967bc8d356bfdd385588fd5f2ba2824 {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.RNA-Seq.S1_L007_R1.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R1_001.fastq.gz 4478859396 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 32f8484e-8802-4c31-9950-0c5003ee0a54 cb73225d00c5a819ce838fa57a9c2686 {"aliquot_tag": "ALQ_993cbcdc", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.RNA-Seq.S1_L007_R2.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R2_001.fastq.gz 5047149306 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 2ee5d97a-9a01-41f0-8211-bfd983276c3f 7df1e6f32d2861eb15fe601a0f145f61 {"aliquot_tag": "ALQ_993cbcdc", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.RNA-Seq.S5_L008_R1.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R1_001.fastq.gz 2946131294 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 81baf6a5-a453-415f-be76-609893ec38ac b4f84646c4b41cf548282e99561d9c73 {"aliquot_tag": "ALQ_8bd3369c", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.RNA-Seq.S5_L008_R2.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R2_001.fastq.gz 3120262615 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 40b15200-8776-4170-a2e0-aebec6f52f39 c5d203825a9993416042b12c79b7dab7 {"aliquot_tag": "ALQ_8bd3369c", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.RNA-Seq.transcriptome.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.transcriptome.gdc_realn.bam 7682964490 BAM transcriptome harmonized CPTAC3 544e1bfc-ead9-4c51-af15-ef615435295d 113d4c770ae8f0084bad70632a058b53 {"aliquot_tag": "ALQ_8bd3369c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.transcriptome.gdc_realn.bam 12492630541 BAM transcriptome harmonized CPTAC3 5336785e-e8a7-476b-930e-38d5143519bb a9abc7ccd634b7da8c200f78aa9f4aab {"aliquot_tag": "ALQ_993cbcdc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.S2_L001_R1.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R1_001.fastq.gz 5897874286 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 b0708658-a00f-4c9a-9409-4c76babfe4d4 53b2ea1dfe2a5df9ae3af2529aabc54c {"aliquot_tag": "ALQ_daede9d1", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.S2_L001_R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R2_001.fastq.gz 20498978988 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 87c9c71c-1d8a-4664-b2ae-e59c22529c31 fee2654b3f2700541a387dd079f28af8 {"aliquot_tag": "ALQ_daede9d1", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.S2_L003_R1.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R1_001.fastq.gz 5393333992 FASTQ S2_L003_R1 submitted_unaligned CPTAC3 003d9012-1a02-4cb3-ac51-eec00edf4173 9f779d2ce860f1c718a2aa4beeb7e9f6 {"aliquot_tag": "ALQ_60f26483", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.S2_L003_R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R2_001.fastq.gz 18493130295 FASTQ S2_L003_R2 submitted_unaligned CPTAC3 9a43af8f-0bc6-4248-a079-bd5cffaec59d f3433c19bcde63f5e320a18db6404bcf {"aliquot_tag": "ALQ_60f26483", "sample": "S2", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.S3_L001_R1.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R1_001.fastq.gz 6764990910 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 7a89329f-21cf-4a5a-a462-e818c53608c3 e6cc4803d729e5e77bcf8858572261b5 {"aliquot_tag": "ALQ_dfc2dae2", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.S3_L001_R2.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R2_001.fastq.gz 23395672432 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 1e87f1a6-aad1-4280-b951-9516931886e4 f2ec5117b63202cfd7747f8ff1088ae7 {"aliquot_tag": "ALQ_dfc2dae2", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.T.hg38 C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 possorted_genome_bam.bam 18753806455 BAM harmonized CPTAC3 909dd050-d623-4be4-b4ad-2f1acaae7588 82fa525c000c9c3b6b40f84382f4df19 {"aliquot_tag": "ALQ_60f26483", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.T.hg38 C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 possorted_genome_bam.bam 19873759001 BAM harmonized CPTAC3 c3f4e95b-0499-47cf-a02c-8558d3072953 b091cabbea3e6cad948082d32893a40d {"aliquot_tag": "ALQ_daede9d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.scRNA-Seq.T.hg38 C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 possorted_genome_bam.bam 21307805775 BAM harmonized CPTAC3 f43f3fb7-7984-43d7-b53e-50118a3f6d73 b63935626e6e222b2443f4a59abdef57 {"aliquot_tag": "ALQ_dfc2dae2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.WGS.A C3N-00149 CCRCC WGS tissue_normal CPT0084590009 CPT0084590009.WholeGenome.RP-1303.bam 65199872615 BAM submitted_aligned CPTAC3 1fdcbfca-3e89-4f14-ad23-ce75a9e988b5 0d0bc062e601b074ea98b77af63d84c2 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.WGS.A.hg38 C3N-00149 CCRCC WGS tissue_normal CPT0084590009 c1c83894-a954-4e46-a807-5bbfd8b63134_wgs_gdc_realn.bam 95630791325 BAM harmonized CPTAC3 07b25196-257f-4cc6-8e26-03b8bee7bae8 0103ebe2640517b605d7d554852ae431 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.WGS.N C3N-00149 CCRCC WGS blood_normal CPT0085310002 CPT0085310002.WholeGenome.RP-1303.bam 77407443278 BAM submitted_aligned CPTAC3 c5562b54-6f0c-49ec-8792-db4288d2680d a37dfd27fdd195a1ef585537e757eb2f {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00149.WGS.N.hg38 C3N-00149 CCRCC WGS blood_normal CPT0085310002 59f6a8d8-d2ee-44ae-8a9d-473c5812c66a_gdc_realn.bam 118031106667 BAM harmonized CPTAC3 62bf4b64-a1be-48b6-88b5-f96f801f0cdf 751275faf85534dfa0d6ab296626615a {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00149.WGS.T C3N-00149 CCRCC WGS tumor CPT0084560006 CPT0084560006.WholeGenome.RP-1303.bam 62584003228 BAM submitted_aligned CPTAC3 82c89c34-eae2-4ff6-a647-cf84a90f68ac b7fe41d66590acb3447fe4de9eb4c34d {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.WGS.T.hg38 C3N-00149 CCRCC WGS tumor CPT0084560006 449ffb6b-9f0e-4cc3-8632-720344de67ca_gdc_realn.bam 93567158837 BAM harmonized CPTAC3 bd902c1d-440a-4e2f-8851-206fec86cb62 77e2c9582c9d017fc28b2f9fbbca20c0 {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.WXS.A C3N-00149 CCRCC WXS tissue_normal CPT0084590009 CPT0084590009.WholeExome.RP-1303.bam 49771507926 BAM submitted_aligned CPTAC3 0a34dd42-aa5e-4994-a52e-ee2f291025ee 0fe9b04c88c954d057ee2e1040055562 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.WXS.A.hg38 C3N-00149 CCRCC WXS tissue_normal CPT0084590009 c1c83894-a954-4e46-a807-5bbfd8b63134_wxs_gdc_realn.bam 66794298434 BAM harmonized CPTAC3 f67c2c25-b27f-4082-89aa-8f85d5b3a03a 7c8ae2d8a35fa9ce2b710e71cca79452 {"aliquot_tag": "ALQ_1b6c2b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00149.WXS.N C3N-00149 CCRCC WXS blood_normal CPT0085310002 CPT0085310002.WholeExome.RP-1303.bam 21291384780 BAM submitted_aligned CPTAC3 b860d861-9bb1-44bc-bca0-f1ca9822e36e ccdce75db9247dae3f5cbb665f5e0887 {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00149.WXS.N.hg38 C3N-00149 CCRCC WXS blood_normal CPT0085310002 59f6a8d8-d2ee-44ae-8a9d-473c5812c66a_gdc_realn.bam 28851974478 BAM harmonized CPTAC3 41500ac9-600c-48df-959c-c9b85224b648 b87324d6f9b8991f9bff4b8a78dbd749 {"aliquot_tag": "ALQ_cce051ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00149.WXS.T C3N-00149 CCRCC WXS tumor CPT0084560006 CPT0084560006.WholeExome.RP-1303.bam 21710038549 BAM submitted_aligned CPTAC3 4c623fb5-b769-4544-bf49-f76155fe2d55 d330785e328c0456dbc976b4f1af3c4c {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00149.WXS.T.hg38 C3N-00149 CCRCC WXS tumor CPT0084560006 449ffb6b-9f0e-4cc3-8632-720344de67ca_gdc_realn.bam 29971126713 BAM harmonized CPTAC3 601c9136-7233-4309-b694-ea5eeaa9e2b4 557b33798907fab2dc0014695b37993e {"aliquot_tag": "ALQ_983a14d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_27c08b1e.miRNA-Seq.S15_L001_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066510012 200526_UNC32-K00270_0248_BHH7WFBBXY_TAATCG_S15_L001_R1_001.unaln.bam 311456281 BAM S15_L001_R1 submitted_unaligned CPTAC3 8dc713a6-31b1-40ac-86b3-1738601a18a6 414b7f2d583103180080e98d6e6634f4 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_27c08b1e.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066510012 04668f78-78f9-4f0a-b521-190e1e7f7bad_mirnaseq_gdc_realn.bam 347299794 BAM harmonized CPTAC3 e7003944-a074-40fe-828f-2b1717697072 4995d6cb35b8277a8f09d0adfbfa02b4 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_27c08b1e.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.chimeric.gdc_realn.bam 56120761 BAM chimeric harmonized CPTAC3 ec49241b-8c7d-4c13-a61e-d84e036ff42a 0525e672e62bbcffe0d61c813be08f19 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_27c08b1e.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.genomic.gdc_realn.bam 10589503435 BAM genomic harmonized CPTAC3 1f718e87-0124-4f98-a072-7c4d6fa2b6ad 0b3c9a8a3ca041bc5f695ba020e96dc6 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_27c08b1e.RNA-Seq.S2_L001_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4912531183 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 f2399c07-4ee4-4777-8edb-88a422f1c979 b366dbd2baf5bf0c3535b586a9c96de2 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_27c08b1e.RNA-Seq.S2_L001_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5975142522 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 9fb17392-f2d0-4d12-8503-aab183708848 d419f5f4584027e9d3fffbd6af866c02 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_27c08b1e.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.transcriptome.gdc_realn.bam 14223420129 BAM transcriptome harmonized CPTAC3 93b8dd80-0acf-4bbd-84ee-30f290a01d69 14df7202a828423244066b13baf91600 {"aliquot_tag": "DUP_27c08b1e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_4d657f6.miRNA-Seq.S43_L005_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066500006 200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L005_R1_001.unaln.bam 262975676 BAM S43_L005_R1 submitted_unaligned CPTAC3 c71d4bcc-731e-45d1-8bd5-9a66047e9c5a e8789e2699ad3bdcc1aebeff66c5fa11 {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_4d657f6.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066500006 20b5307e-9a13-41e8-943a-52f29a9cefc5_mirnaseq_gdc_realn.bam 297271324 BAM harmonized CPTAC3 28662506-2196-4c57-bd9f-38cee3e4d09f 7814720285895f2a1c8b15bc5597ff7c {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_4d657f6.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.chimeric.gdc_realn.bam 225870739 BAM chimeric harmonized CPTAC3 f3df2ac6-6aa8-4edd-a66d-7c3ac85d22ee b5d8867e54f810b14f5a198c799e2ef5 {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_4d657f6.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.genomic.gdc_realn.bam 8326027817 BAM genomic harmonized CPTAC3 bb4dc287-edd9-4ebf-aef8-7b0568a86464 e29dffe7948d3d9f0f531587785c1c2a {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_4d657f6.RNA-Seq.S38_L006_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R1_001.fastq.gz 3969540349 FASTQ S38_L006_R1 submitted_unaligned CPTAC3 fc944036-cd67-4263-b94e-cec2d6eaa30f 4527f874d076789171da4e5c0d5a390a {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_4d657f6.RNA-Seq.S38_L006_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R2_001.fastq.gz 4592438801 FASTQ S38_L006_R2 submitted_unaligned CPTAC3 28c45fe7-ca60-4a75-91dc-7132d592c14d 6883db94e572124efc15d2f9cc37390d {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_4d657f6.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.transcriptome.gdc_realn.bam 10005109528 BAM transcriptome harmonized CPTAC3 f039f3b3-bd29-4721-813c-75312d20fd03 0def36132b3e5a9f7868176894faddc0 {"aliquot_tag": "DUP_4d657f6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_5225fbb3.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066490009 204367490056_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 45e98501-5d86-48d1-ab41-e3129c5f6f05 aba405babda0fad2dc65f0860d14b0a6 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_5225fbb3.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066490009 204367490056_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 85b2fa7a-fed3-4cf6-a57c-2e1e7b02821b de930d19ebc5ecd406e1002dc1870281 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_5225fbb3.WGS.T C3N-00150 CCRCC WGS tumor CPT0066490009 CPT0066490009.WholeGenome.RP-2158.bam 25579342308 BAM submitted_aligned CPTAC3 f753e393-0d7f-4ac0-b7fd-65d5e4b18be5 b2b7ff3f527f8f81b52986b871607885 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_5225fbb3.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066490009 32d6507c-79d4-49ff-bf6a-4d6704974d8f_wgs_gdc_realn.bam 77853261833 BAM harmonized CPTAC3 68fe5fab-4ba6-4408-aa04-94cec8f0f05c 6136ab2ded923ed441f72d1cb69c59f7 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_5225fbb3.WXS.T C3N-00150 CCRCC WXS tumor CPT0066490009 CPT0066490009.WholeExome.RP-1303.bam 17850702976 BAM submitted_aligned CPTAC3 cf86588f-82ed-437d-b52b-f7abb59b3f08 3cfb110076dfe148654aae4c5c9542c7 {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_5225fbb3.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066490009 32d6507c-79d4-49ff-bf6a-4d6704974d8f_wxs_gdc_realn.bam 24499994605 BAM harmonized CPTAC3 e37e27a3-e67b-47bd-9786-a95f1eedc029 da7e8dccd5f0b4ef5e390c9e644f2e8b {"aliquot_tag": "DUP_5225fbb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_94694a67.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066500009 204367490030_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 86776df8-1b6a-4832-a1bc-1a5d2bfa3b27 e5696322c176c97e630a4c3c745f13e1 {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_94694a67.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066500009 204367490030_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 9a5e72fb-9938-48ee-b44f-d1833aafa011 dd88da2ef83f69440375115e44a5c69b {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_94694a67.WGS.T C3N-00150 CCRCC WGS tumor CPT0066500009 CPT0066500009.WholeGenome.RP-2158.bam 21076245505 BAM submitted_aligned CPTAC3 cee09d0b-70e5-4a12-9985-a2d447e2e144 aa21a6ae3ea0cf041f11c303a565c6fd {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_94694a67.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066500009 630d1d67-fa77-4962-953d-f09f20109b06_wgs_gdc_realn.bam 63157516252 BAM harmonized CPTAC3 d738ca8a-876b-45f8-ac0a-d9ba0579a901 d721c4a2460c4964b2b3b410cd1c2e33 {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_94694a67.WXS.T C3N-00150 CCRCC WXS tumor CPT0066500009 CPT0066500009.WholeExome.RP-1303.bam 18542137804 BAM submitted_aligned CPTAC3 de600cc0-4df1-436d-ad6e-564908d4d1aa e11adbed131377d25e1cedff4a0267c9 {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_94694a67.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066500009 630d1d67-fa77-4962-953d-f09f20109b06_wxs_gdc_realn.bam 24358009056 BAM harmonized CPTAC3 bd3c79bc-2e0c-4c7c-a856-3f05eaba61ae 2eec4a6621351c1e64f16715f0a2eb4c {"aliquot_tag": "DUP_94694a67", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_c29ae622.miRNA-Seq.S44_L005_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066490006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAGCTT_S44_L005_R1_001.unaln.bam 380182361 BAM S44_L005_R1 submitted_unaligned CPTAC3 f8047bac-2075-434f-954a-1daab31cb4a0 b5d2cc184bc90c132d6f0f08ca9b6167 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_c29ae622.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066490006 bef625e2-5d1f-4877-bd4a-bcb9fe5eee18_mirnaseq_gdc_realn.bam 414646609 BAM harmonized CPTAC3 d482ffb3-ef70-4e7b-a2b2-421c7d65f4f2 db3a465a404df754a9c727c1c76d93b9 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_c29ae622.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.chimeric.gdc_realn.bam 334977588 BAM chimeric harmonized CPTAC3 55b7e1bf-740d-4cd8-8143-f65d8b29cccd 1a626db83f367fcf60dfab5919001349 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_c29ae622.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.genomic.gdc_realn.bam 10892186888 BAM genomic harmonized CPTAC3 1a3bc034-07b5-4264-8a0f-c1b948eeac2e 07222e4e5d23a3c27ad0fcaba86dfeb6 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_c29ae622.RNA-Seq.S37_L006_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R1_001.fastq.gz 4987071225 FASTQ S37_L006_R1 submitted_unaligned CPTAC3 781182a7-69b1-48db-bdc5-3857e93951b8 e00d51622ef0a39c8de847139d4bc9dc {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_c29ae622.RNA-Seq.S37_L006_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R2_001.fastq.gz 5833583567 FASTQ S37_L006_R2 submitted_unaligned CPTAC3 2e50309f-29d7-44cd-a1aa-4bb6118e5d78 6d373b513ed06ae01b0a01a36e309655 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_c29ae622.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.transcriptome.gdc_realn.bam 14575740355 BAM transcriptome harmonized CPTAC3 e35bf1cc-467a-4ebe-a975-220b988413a6 0cf43735d4e2c3f4aed1cb79a0782cd7 {"aliquot_tag": "DUP_c29ae622", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_de0e5341.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066510008 204367490061_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e78b8b17-bfb6-4bdc-ae5b-19b21216e3db b733d906d8fbed7800248ab392cd3610 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_de0e5341.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066510008 204367490061_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 3152a092-f7eb-4fd9-a32c-b9b073974a02 eb95d8a113eee55f5b74da4ce906e3df {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_de0e5341.WGS.T C3N-00150 CCRCC WGS tumor CPT0066510008 CPT0066510008.WholeGenome.RP-2158.bam 24517643022 BAM submitted_aligned CPTAC3 9daa8236-2c64-4433-8e4e-fd39952413c9 84e3103125c230ccc64434622f235e7f {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_de0e5341.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066510008 90efd267-01a3-4c8d-ac68-52f973a6f027_wgs_gdc_realn.bam 73089122932 BAM harmonized CPTAC3 67d54c7f-c6eb-41eb-8c9e-0f89abbb6c18 c03532780c28e1d96021323f2850d098 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_de0e5341.WXS.T C3N-00150 CCRCC WXS tumor CPT0066510008 CPT0066510008.WholeExome.RP-1303.bam 22419000430 BAM submitted_aligned CPTAC3 e7c16a79-ba56-43ca-a710-d496a9c05dd3 cb7297a7f3450c563b22a9cc5155ccb5 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.DUP_de0e5341.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066510008 90efd267-01a3-4c8d-ac68-52f973a6f027_wxs_gdc_realn.bam 31542632457 BAM harmonized CPTAC3 4563ea6d-2b2f-448f-aa77-9b1bcb278a72 98c65943fc00086341a451f7a8f6a719 {"aliquot_tag": "DUP_de0e5341", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.MethArray.Green.A C3N-00150 CCRCC Methylation_Array tissue_normal CPT0066520009 203027390029_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8a9a7add-83a3-4366-93ef-fe4c6af83dbf 45743cc909070ab836fb16f8b8f0227c {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.MethArray.Green.T C3N-00150 CCRCC Methylation_Array tumor CPT0066480009 202184990008_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 fd558bdd-3f77-4bd6-b034-47c8baba30aa 163242d671ef3dd348ad2c8d294b2680 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.MethArray.Red.A C3N-00150 CCRCC Methylation_Array tissue_normal CPT0066520009 203027390029_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 69b4770c-6aa2-47d7-af17-3c9c464ae0b8 f1522dded24f5e61a29bfb4a9c19247a {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.MethArray.Red.T C3N-00150 CCRCC Methylation_Array tumor CPT0066480009 202184990008_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 05122d3c-3a39-4287-9fbf-7da47391e803 0137cd03410b0ad7bcf3180efebb187e {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.miRNA-Seq.A.hg38 C3N-00150 CCRCC miRNA-Seq tissue_normal CPT0066520006 cee1898f-c2d5-4bd0-9db0-0dc34032f890_mirnaseq_gdc_realn.bam 229763349 BAM harmonized CPTAC3 ef5bda08-8048-4606-b305-c70a6880fce9 8d5aa791e93900c776de33982811b19a {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.miRNA-Seq.S12_L003_R1.A C3N-00150 CCRCC miRNA-Seq tissue_normal CPT0066520006 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L003_R1_001.unaln.bam 207117983 BAM S12_L003_R1 submitted_unaligned CPTAC3 3898782d-7339-45da-b974-7d614b6b2bb0 6362662abeaa489d810c7272c7e23f3e {"aliquot_tag": "ALQ_7e160496", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.miRNA-Seq.S22_L001_R1.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066480006 181113_UNC31-K00269_0164_AH23NNBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 198592751 BAM S22_L001_R1 submitted_unaligned CPTAC3 53605880-e082-4afe-bd6a-c36f38cca0a1 daaaa809d41bbe0e11b48dc12648c773 {"aliquot_tag": "ALQ_fffacf92", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066480006 85ba3a7a-834d-40f0-bda4-1d86dd8710ae_mirnaseq_gdc_realn.bam 222265685 BAM harmonized CPTAC3 4c579db4-55ac-4a70-a0f7-e0cc08f9d18f 94c439a1f42dcd717f89b4923f833b44 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.RNA-Seq.chimeric.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.chimeric.gdc_realn.bam 61826855 BAM chimeric harmonized CPTAC3 43c0a6af-99bb-46e7-9536-eba614f1f89f 905537d46cbc92dff17236a14a8eb99b {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.chimeric.gdc_realn.bam 20553246 BAM chimeric harmonized CPTAC3 e29b4a30-fb93-4871-bf5e-536866e1bbbd 3c15255b4b21e4533df205d473803722 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.RNA-Seq.genomic.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.genomic.gdc_realn.bam 7546618463 BAM genomic harmonized CPTAC3 a3d92754-0b98-43f7-8c89-270685a51488 4a417e6dcfa38e77424b0cd2828a3684 {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.genomic.gdc_realn.bam 6642670462 BAM genomic harmonized CPTAC3 1901d326-11d7-4781-8656-349c6dab259d f98f4e4cf4a027340023e62e9c726748 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.RNA-Seq.S12_L003_R1.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3249194491 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 150293f5-6224-4de0-a778-9206a16aa41a 63c77863adf613bbd315a4a2769c045d {"aliquot_tag": "ALQ_fffacf92", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.RNA-Seq.S12_L003_R2.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 3523187235 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 dcc3c017-ead2-4264-89f0-6b97c01e4005 d99e7bd9f101002c80be5aa9588db824 {"aliquot_tag": "ALQ_fffacf92", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.RNA-Seq.S14_L004_R1.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R1_001.fastq.gz 3764973522 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 48645880-9721-4027-8168-48b937146d8f 746ce36fc96763a2a11462668928f222 {"aliquot_tag": "ALQ_7e160496", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.RNA-Seq.S14_L004_R2.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R2_001.fastq.gz 4017114783 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 d615fdfa-8133-421e-b1e7-fb8fcb83b92a f19d6348379f5fddacccf3edadb98abf {"aliquot_tag": "ALQ_7e160496", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.RNA-Seq.transcriptome.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.transcriptome.gdc_realn.bam 8987991835 BAM transcriptome harmonized CPTAC3 0a4e8d53-f940-42f2-b170-9bf03eb00333 2470d03e9e4e6ab9c2d6665511bb1c7b {"aliquot_tag": "ALQ_7e160496", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.transcriptome.gdc_realn.bam 9681514596 BAM transcriptome harmonized CPTAC3 5f873cce-c0fb-49d2-89b7-088458f4b0ee b8c88dfd83bebc39bf685ab383633a17 {"aliquot_tag": "ALQ_fffacf92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.WGS.A C3N-00150 CCRCC WGS tissue_normal CPT0066520009 CPT0066520009.WholeGenome.RP-1303.bam 65063083711 BAM submitted_aligned CPTAC3 b5af388d-3f66-489e-93d0-472c28dd4e4d dd9320a2bb3e482f7da22ba3ea6ac645 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.WGS.A.hg38 C3N-00150 CCRCC WGS tissue_normal CPT0066520009 342d2307-9763-4970-8a5e-98b220c02b87_wgs_gdc_realn.bam 95283042557 BAM harmonized CPTAC3 5a6cfbde-5ade-43be-aec7-22391bef5691 ed5432f8697a76802881e391ef1b20a7 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.WGS.N C3N-00150 CCRCC WGS blood_normal CPT0071650002 CPT0071650002.WholeGenome.RP-1303.bam 90619661921 BAM submitted_aligned CPTAC3 99ba5bf9-4f61-442b-b652-20194401747c 386b1a393587044d6018a17be70ba21e {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00150.WGS.N.hg38 C3N-00150 CCRCC WGS blood_normal CPT0071650002 3810cfb3-a774-44ea-9122-965669d70781_gdc_realn.bam 141024358152 BAM harmonized CPTAC3 80638538-185f-457d-95bd-4f5e3e47969c 6cee8efc646c5d4e85e9f5e30f9771b4 {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00150.WGS.T C3N-00150 CCRCC WGS tumor CPT0066480009 CPT0066480009.WholeGenome.RP-1303.bam 68716757157 BAM submitted_aligned CPTAC3 29a197b9-6a1e-4ed7-907e-def7d1586a59 0ed85d6723ee0af8df09c30d94d0dea4 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.WGS.T.hg38 C3N-00150 CCRCC WGS tumor CPT0066480009 ff4668a7-c6a6-42a8-b0a2-87e2ef2e888a_gdc_realn.bam 102182445437 BAM harmonized CPTAC3 a88d547b-a762-45dd-bd1d-aad430db108f adae96942ff998da1ec6b0df1f292b96 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.WXS.A C3N-00150 CCRCC WXS tissue_normal CPT0066520009 CPT0066520009.WholeExome.RP-1303.bam 34406355448 BAM submitted_aligned CPTAC3 d446c485-a192-4c30-8e35-d7372eb84ec5 1617e63ca13f49b90617ae65502ed3c8 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.WXS.A.hg38 C3N-00150 CCRCC WXS tissue_normal CPT0066520009 342d2307-9763-4970-8a5e-98b220c02b87_wxs_gdc_realn.bam 46159207692 BAM harmonized CPTAC3 c52d3c5e-06ad-430e-b25d-cb0a8292c726 4d9134975c7accc3c172489b686e3a12 {"aliquot_tag": "ALQ_eea91907", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00150.WXS.N C3N-00150 CCRCC WXS blood_normal CPT0071650002 CPT0071650002.WholeExome.RP-1303.bam 25392133523 BAM submitted_aligned CPTAC3 b091ec5c-6d38-4749-b0fb-16a0d4122e50 afbcbf211b84d0d39f26c946685e4eb3 {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00150.WXS.N.hg38 C3N-00150 CCRCC WXS blood_normal CPT0071650002 3810cfb3-a774-44ea-9122-965669d70781_gdc_realn.bam 34453307020 BAM harmonized CPTAC3 33187984-635f-4440-b9d6-5798acf8df20 bfe33da82d8e38bbe9f82ef5f9cbf05e {"aliquot_tag": "ALQ_44c25021", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00150.WXS.T C3N-00150 CCRCC WXS tumor CPT0066480009 CPT0066480009.WholeExome.RP-1303.bam 32818808115 BAM submitted_aligned CPTAC3 5531adb4-f725-43ea-8dc8-27d7340bb60b bc6ef7c16629ba35835221ae3b088bac {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00150.WXS.T.hg38 C3N-00150 CCRCC WXS tumor CPT0066480009 ff4668a7-c6a6-42a8-b0a2-87e2ef2e888a_gdc_realn.bam 45301042702 BAM harmonized CPTAC3 b2863f3c-46e2-44e6-9669-702996e320b1 cf00264e536b00a0b2803cd047bdc758 {"aliquot_tag": "ALQ_6f45d203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.MethArray.Green.T C3N-00151 UCEC Methylation_Array tumor CPT0066620006 202178770100_R05C01_Grn.idat 13676233 IDAT Green NA CPTAC3 631b2ed0-4fea-4ff5-af59-a9795416b0d1 029d3501e375528a7973aa3b806fa7ee {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.MethArray.Red.T C3N-00151 UCEC Methylation_Array tumor CPT0066620006 202178770100_R05C01_Red.idat 13676233 IDAT Red NA CPTAC3 46327381-ab34-455c-af44-9fc1dfa538ba 48f8672979d0a5862bc8c38c9ef10ba2 {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.miRNA-Seq.S3_L008_R1.T C3N-00151 UCEC miRNA-Seq tumor CPT0066620009 181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L008_R1_001.unaln.bam 241179103 BAM S3_L008_R1 submitted_unaligned CPTAC3 0915d914-e871-4ed1-9b1b-b2e56de06011 594f56707dab67afcb8c41e62b34a52c {"aliquot_tag": "ALQ_683d6ba9", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.miRNA-Seq.T.hg38 C3N-00151 UCEC miRNA-Seq tumor CPT0066620009 dbd51823-d415-4d6c-97eb-abec7b6349ac_mirnaseq_gdc_realn.bam 265027554 BAM harmonized CPTAC3 b97d2cb6-f9ab-48a3-90c2-a3de52bba1d9 7fa9959f3d21d3b67cd7a84884290f3c {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.chimeric.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.chimeric.gdc_realn.bam 158602802 BAM chimeric harmonized CPTAC3 b8145313-599a-4b70-93e7-80b86c154875 813c26758d554d33e657a72308e7d83d {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.chimeric.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.chimeric.gdc_realn.bam 224551563 BAM chimeric harmonized CPTAC3 99a19f59-2430-489e-bf07-61d424947fa7 4b9bf38cd44d99e4dec3758ae67f74ad {"aliquot_tag": "ALQ_2071580f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.genomic.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.genomic.gdc_realn.bam 7512740867 BAM genomic harmonized CPTAC3 bd5ab632-9bd8-4802-b2b4-54a0a0a19c78 dad910c1704fc84d35217a2f0a562ce5 {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.genomic.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.genomic.gdc_realn.bam 10274695873 BAM genomic harmonized CPTAC3 316e7eaa-fbd7-40a5-8dbe-193793d60d4d 9dcbb4563d570e963689f946c2c585ad {"aliquot_tag": "ALQ_2071580f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.S48_R1.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R1_001.fastq.gz 6446023082 FASTQ S48_R1 submitted_unaligned CPTAC3 b6ce1f72-519b-4d84-9093-38a962e3a884 b8d7fbf9ba4dc8e659636625c977f88a {"aliquot_tag": "ALQ_2071580f", "sample": "S48", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.S48_R2.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R2_001.fastq.gz 6727311491 FASTQ S48_R2 submitted_unaligned CPTAC3 6c2c61fe-b9c9-4ce6-9ecc-4a114c1fa98d ff42e27c72d4994c73557ec99d4d7e54 {"aliquot_tag": "ALQ_2071580f", "sample": "S48", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.S8_L008_R1.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R1_001.fastq.gz 3567796408 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 325918b9-3905-49ff-b4f6-f76a88e30301 f4f895a1eb8577aeeaeb3a2f8a55a56f {"aliquot_tag": "ALQ_683d6ba9", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.S8_L008_R2.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R2_001.fastq.gz 3831274575 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 31961972-9d79-45d4-a53c-b80875dd8e9a 31eb693c4ba38ee3aa23d419d2884f1f {"aliquot_tag": "ALQ_683d6ba9", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.transcriptome.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.transcriptome.gdc_realn.bam 10241342155 BAM transcriptome harmonized CPTAC3 bf4b9710-91a6-4869-9858-e8e9f0a88599 065fcd5f98d7bdc6cd64a581ea7a8d91 {"aliquot_tag": "ALQ_683d6ba9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.RNA-Seq.transcriptome.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.transcriptome.gdc_realn.bam 4837486849 BAM transcriptome harmonized CPTAC3 bed824a3-b650-4805-b837-2ce194a77666 d02d8939c476771dc9df93819c868df1 {"aliquot_tag": "ALQ_2071580f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.WGS.N C3N-00151 UCEC WGS blood_normal CPT0071660002 CPT0071660002.WholeGenome.RP-1303.bam 80274701416 BAM submitted_aligned CPTAC3 094a6259-09f3-4465-8335-12ee260b40ee 3b9b8454c652b9320db160f1b28440db {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00151.WGS.N.hg38 C3N-00151 UCEC WGS blood_normal CPT0071660002 8252f908-a17d-475a-a94f-88043f2bf9da_gdc_realn.bam 120591713328 BAM harmonized CPTAC3 c8094cb6-306f-499b-861c-54292228468d accf6b2ef597bbf7e3fc28a6a679fa1c {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00151.WGS.T C3N-00151 UCEC WGS tumor CPT0066620006 CPT0066620006.WholeGenome.RP-1303.bam 72344722974 BAM submitted_aligned CPTAC3 e6d5f29d-5ff0-40d9-9ef0-ca925ad2f7f2 c59b66e0c1ba660d184692511903c26a {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.WGS.T.hg38 C3N-00151 UCEC WGS tumor CPT0066620006 73dee08e-268f-4107-b55d-ee1906f078e6_gdc_realn.bam 111137112775 BAM harmonized CPTAC3 fc38dc22-853e-41e9-a8c6-ab43e06b3179 42fd797ce86930026406ad533a2cdcbd {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.WXS.N C3N-00151 UCEC WXS blood_normal CPT0071660002 CPT0071660002.WholeExome.RP-1303.bam 28796809302 BAM submitted_aligned CPTAC3 9b86c86a-b2db-4215-b4d3-b244b3ec6784 c378dcdbbadda8f1be16c6e8c23edf25 {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00151.WXS.N.hg38 C3N-00151 UCEC WXS blood_normal CPT0071660002 8252f908-a17d-475a-a94f-88043f2bf9da_gdc_realn.bam 40967643065 BAM harmonized CPTAC3 94cf10bc-d882-429b-8083-bd4123f3a4bc 14905b438a1f9defdeb59367108ad04b {"aliquot_tag": "ALQ_3622af1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00151.WXS.T C3N-00151 UCEC WXS tumor CPT0066620006 CPT0066620006.WholeExome.RP-1303.bam 29265572612 BAM submitted_aligned CPTAC3 719ccc63-3efb-4627-99f8-b227ad0c9a0d 88c1409906e7128690df0fd22fde26e8 {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00151.WXS.T.hg38 C3N-00151 UCEC WXS tumor CPT0066620006 73dee08e-268f-4107-b55d-ee1906f078e6_gdc_realn.bam 40816006378 BAM harmonized CPTAC3 5246a7b0-58b3-425b-9c84-dfe8a361fc81 cfcd1614efa117ba6c0b4e1cdc31210f {"aliquot_tag": "ALQ_f8827638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.MethArray.Green.T C3N-00154 CCRCC Methylation_Array tumor CPT0081880006 202184900149_R08C01_Grn.idat 13676256 IDAT Green NA CPTAC3 a813d38c-f89b-4eb6-9287-233def265cfe a2e99027c3cd7e90a2be164b5bed3fc6 {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.MethArray.Red.T C3N-00154 CCRCC Methylation_Array tumor CPT0081880006 202184900149_R08C01_Red.idat 13676256 IDAT Red NA CPTAC3 93bf1fd7-1278-4420-8a71-3ccb3287c001 e3562b6e2be84e6bb54d56c9c32cc1dd {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.miRNA-Seq.S19_L003_R1.T C3N-00154 CCRCC miRNA-Seq tumor CPT0081880009 181113_UNC31-K00269_0164_AH23NNBBXY_TACAGC_S19_L003_R1_001.unaln.bam 228566245 BAM S19_L003_R1 submitted_unaligned CPTAC3 12e4b7d8-88a0-422a-80f7-55be66d20ba1 dcc54c6eecdff1088f2c3c849c2ffd18 {"aliquot_tag": "ALQ_c8aa3ec4", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.miRNA-Seq.T.hg38 C3N-00154 CCRCC miRNA-Seq tumor CPT0081880009 8a3f963a-7409-4b08-ac27-23983fc4566b_mirnaseq_gdc_realn.bam 251573861 BAM harmonized CPTAC3 26370490-ad6b-4efd-afd9-1206189eb91c 628a16e4f5056eaeefb02bcc49d03954 {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.RNA-Seq.chimeric.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.chimeric.gdc_realn.bam 47162401 BAM chimeric harmonized CPTAC3 8432e478-3d8a-496f-9a36-54bbf47ae4f0 7c77364922c073792c51e5c863b7a923 {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.RNA-Seq.genomic.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.genomic.gdc_realn.bam 7721721613 BAM genomic harmonized CPTAC3 a26a30b2-ae33-49ce-a4e8-12013f3a51fa a10fcb6287099df695f21fb5cb192cfb {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.RNA-Seq.S8_L008_R1.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R1_001.fastq.gz 3783739243 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 735f980d-a3b0-4b7c-8195-0c43938f77f4 1354384458cffd7954e98b6696c9491b {"aliquot_tag": "ALQ_c8aa3ec4", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.RNA-Seq.S8_L008_R2.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R2_001.fastq.gz 4186139953 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 77b08e1a-d099-477c-afac-d3ca195a37d5 cbb01d143bc0bb008796a565a9d7f81d {"aliquot_tag": "ALQ_c8aa3ec4", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.RNA-Seq.transcriptome.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.transcriptome.gdc_realn.bam 9764868696 BAM transcriptome harmonized CPTAC3 8115c4a0-1845-4ff5-b78e-db1df248b7ff 8ec01000396c35649c149a2230eecf5f {"aliquot_tag": "ALQ_c8aa3ec4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.WGS.N C3N-00154 CCRCC WGS blood_normal CPT0085300002 CPT0085300002.WholeGenome.RP-1303.bam 74857063493 BAM submitted_aligned CPTAC3 2be58af0-dad5-4eb1-9f46-f249dcf44bfd 7ceb668d4dbfebce16fd9540185cdb68 {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00154.WGS.N.hg38 C3N-00154 CCRCC WGS blood_normal CPT0085300002 2c47a5c2-8f05-4cb1-bc7f-48844c3f0bf4_gdc_realn.bam 115809831209 BAM harmonized CPTAC3 b056990b-61e7-4dda-9f37-77710d888d5f 610fe9220ef0cc73c946e00b0489ac98 {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00154.WGS.T C3N-00154 CCRCC WGS tumor CPT0081880006 CPT0081880006.WholeGenome.RP-1303.bam 76509545320 BAM submitted_aligned CPTAC3 1dd8580a-02a7-431f-8460-3cab5a6cd8f5 6330e840b232ae8f8539d17655dc34c0 {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.WGS.T.hg38 C3N-00154 CCRCC WGS tumor CPT0081880006 884524a7-f4ac-4090-a91f-5cb369657472_gdc_realn.bam 115849720224 BAM harmonized CPTAC3 f37e1097-7505-445a-a160-dbf32d06b89e 711cb106b3da462e807f799cdded6c14 {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.WXS.N C3N-00154 CCRCC WXS blood_normal CPT0085300002 CPT0085300002.WholeExome.RP-1303.bam 33186379776 BAM submitted_aligned CPTAC3 8e2e6f9e-5744-450b-86cc-23daf6adb454 e3a481e498702edc3c8813cba5ee887a {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00154.WXS.N.hg38 C3N-00154 CCRCC WXS blood_normal CPT0085300002 2c47a5c2-8f05-4cb1-bc7f-48844c3f0bf4_gdc_realn.bam 44911493242 BAM harmonized CPTAC3 91200c69-2fd6-45f3-85fc-85b966d6de2f 1ba09002c65c8a6db77a38d5d5965a60 {"aliquot_tag": "ALQ_f180785d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00154.WXS.T C3N-00154 CCRCC WXS tumor CPT0081880006 CPT0081880006.WholeExome.RP-1303.bam 30132980665 BAM submitted_aligned CPTAC3 555b5a96-481f-4f28-8b7b-f57774d116ad d5a81f723ec4d10b7423e137bd3efcca {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00154.WXS.T.hg38 C3N-00154 CCRCC WXS tumor CPT0081880006 884524a7-f4ac-4090-a91f-5cb369657472_gdc_realn.bam 40881738157 BAM harmonized CPTAC3 b17fadf8-5555-45d9-a935-b6a8b16cb1d1 3e220ff1404e6d87fe13495f6af0212b {"aliquot_tag": "ALQ_58152355", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00155.MethArray.Green.T C3N-00155 UCEC Methylation_Array tumor CPT0104820009 203219650156_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e7851427-b364-4007-88c3-4b8ee54fce40 7bdb96cfa8a4cd5b6faf01e19675b5cc {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.MethArray.Red.T C3N-00155 UCEC Methylation_Array tumor CPT0104820009 203219650156_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 072b7d1f-e240-4ad0-bce3-c1ac38662282 9ec9abedb196fb87a2d98063e2c302c1 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.miRNA-Seq.S15_L002_R1.T C3N-00155 UCEC miRNA-Seq tumor CPT0104820006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGTCA_S15_L002_R1_001.unaln.bam 244932224 BAM S15_L002_R1 submitted_unaligned CPTAC3 651d6e61-1dce-47a0-9b9a-f5b2474101af dcb20b9a1241e0b1f29f8fae9d356d6e {"aliquot_tag": "ALQ_84031ba5", "sample": "S15", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.miRNA-Seq.T.hg38 C3N-00155 UCEC miRNA-Seq tumor CPT0104820006 e0d66cb0-c254-4b50-8a8e-600a97eb22de_mirnaseq_gdc_realn.bam 258528809 BAM harmonized CPTAC3 f0fa7ab9-0f87-4f3b-9007-1e43ce1c6f0e 59e27c949b8f86323b47d5c8803b20ba {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.chimeric.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.chimeric.gdc_realn.bam 38860278 BAM chimeric harmonized CPTAC3 69c37b8a-2e8e-4940-a4f9-06b155bedc82 e92bd1417449c7eab99e64add54012e6 {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.chimeric.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.chimeric.gdc_realn.bam 180949342 BAM chimeric harmonized CPTAC3 b21d3b9e-302a-4ca3-9771-2d771c569ca6 879b912f5224908a16dae9a35c69b239 {"aliquot_tag": "ALQ_6e05a5d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.genomic.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.genomic.gdc_realn.bam 11280233141 BAM genomic harmonized CPTAC3 73b146dd-c0dd-4762-892d-3f20276b9ae9 082e1c997568e976c467d2ee56e400fe {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.genomic.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.genomic.gdc_realn.bam 10243535021 BAM genomic harmonized CPTAC3 4720351e-b6dd-48db-9e65-a13aa328601d 30e1b77b155670e6f610d84a32d2ac3e {"aliquot_tag": "ALQ_6e05a5d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.S1_L007_R1.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 4605942366 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 1dbf7251-4460-46d3-86a7-a0ef00384fbc bcd8866cddb7bb5b0de65629e727df5e {"aliquot_tag": "ALQ_84031ba5", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.S1_L007_R2.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 5038825391 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 681382d7-ca49-4599-8133-72cbecbea0fb 8ec5df7442f24f55c9c684c192b8c58d {"aliquot_tag": "ALQ_84031ba5", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.S58_R1.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R1_001.fastq.gz 6589081593 FASTQ S58_R1 submitted_unaligned CPTAC3 b8cd98a4-d8a7-49db-a6ab-24da361708ec ddea4cb632feee25e24853e21006a172 {"aliquot_tag": "ALQ_6e05a5d1", "sample": "S58", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.S58_R2.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R2_001.fastq.gz 6949036526 FASTQ S58_R2 submitted_unaligned CPTAC3 2a5791b3-9ca2-4146-a240-795f61628d14 f92f4a4884ae17f79712c4d2fb7d887f {"aliquot_tag": "ALQ_6e05a5d1", "sample": "S58", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.transcriptome.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.transcriptome.gdc_realn.bam 12186096862 BAM transcriptome harmonized CPTAC3 6b20254d-dfb5-4a88-877a-d829aea26b68 8e1c5af3d562caa3511509e6bae2fffa {"aliquot_tag": "ALQ_84031ba5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.RNA-Seq.transcriptome.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.transcriptome.gdc_realn.bam 6391189596 BAM transcriptome harmonized CPTAC3 6d6b0760-00d8-4b8a-9213-a47ebbc0d165 e6c1150cff9290286bf492b12c79b6bc {"aliquot_tag": "ALQ_6e05a5d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.WGS.N C3N-00155 UCEC WGS blood_normal CPT0110000002 CPT0110000002.WholeGenome.RP-1303.bam 78905328586 BAM submitted_aligned CPTAC3 1cfd640e-1232-4c0c-9bd5-417f2087928a 322c608d74c0fc59834ef59d0d21196e {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00155.WGS.N.hg38 C3N-00155 UCEC WGS blood_normal CPT0110000002 5adced66-9cb2-4fb3-a62d-73088f173b03_wgs_gdc_realn.bam 114631627440 BAM harmonized CPTAC3 fb1b4a51-f44c-47a6-91c7-b93bfc6dbed7 fcd54af5918fcea2eb8f171646768727 {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00155.WGS.T C3N-00155 UCEC WGS tumor CPT0104820009 CPT0104820009.WholeGenome.RP-1303.bam 69673143095 BAM submitted_aligned CPTAC3 7ca532ed-d51f-4376-b967-7ac23ab3053c 80ad4b707ea71b374c4741f3426ba23e {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.WGS.T.hg38 C3N-00155 UCEC WGS tumor CPT0104820009 62db6c0b-5281-4d54-ae61-e2837422c183_wgs_gdc_realn.bam 99214604567 BAM harmonized CPTAC3 b132a84e-0733-4461-87d3-9e0a1d758480 dcd8bcbdf57ed246047ad1ef8f119045 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.WXS.N C3N-00155 UCEC WXS blood_normal CPT0110000002 CPT0110000002.WholeExome.RP-1303.bam 22907457319 BAM submitted_aligned CPTAC3 469ffec9-cd9a-4c0d-870c-c0f690f29217 adb7fb6417540440094f71d86dcd4817 {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00155.WXS.N.hg38 C3N-00155 UCEC WXS blood_normal CPT0110000002 5adced66-9cb2-4fb3-a62d-73088f173b03_wxs_gdc_realn.bam 31762958399 BAM harmonized CPTAC3 ab9967a6-16fa-4b94-8301-ebc2da4ccf26 1397a6bb7ce98acb159e01de89e462f8 {"aliquot_tag": "ALQ_2d182a3c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00155.WXS.T C3N-00155 UCEC WXS tumor CPT0104820009 CPT0104820009.WholeExome.RP-1303.bam 25497760093 BAM submitted_aligned CPTAC3 d15a429c-f2b5-4890-84c5-aeae49df7466 48c3a6c46569ff5db0fd59cf57df05a7 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00155.WXS.T.hg38 C3N-00155 UCEC WXS tumor CPT0104820009 62db6c0b-5281-4d54-ae61-e2837422c183_wxs_gdc_realn.bam 35392980917 BAM harmonized CPTAC3 dc755142-6651-4df0-85a1-4c970f3c23c7 3ecdeceeff3bef71db4a79f0723a6253 {"aliquot_tag": "ALQ_14bc0634", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00167.MethArray.Green.A C3N-00167 LUAD Methylation_Array tissue_normal CPT0013630009 203028200014_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 43f9f180-78a9-40b7-a502-9a92004538af c6dfb948441975e1d607c22e93bebeab {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.MethArray.Green.T C3N-00167 LUAD Methylation_Array tumor CPT0013600009 202176290087_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 62b11be8-72c2-49d3-83f1-59bcd3427704 b488ea5cf43eaf49bbb3bcda45f0377d {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.MethArray.Red.A C3N-00167 LUAD Methylation_Array tissue_normal CPT0013630009 203028200014_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 6d19c91f-55cd-424d-a0aa-dca635ab4627 5e8ab89d1276ec55274dd05e3a241d2b {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.MethArray.Red.T C3N-00167 LUAD Methylation_Array tumor CPT0013600009 202176290087_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 942c4e16-1625-4263-9e43-9ce7542b8a4f 2a8ca32f92e2072ba985498da052f12e {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.miRNA-Seq.A.hg38 C3N-00167 LUAD miRNA-Seq tissue_normal CPT0013630006 6ad8a7af-1039-48d8-ad5f-ea2c1826f83f_mirnaseq_gdc_realn.bam 339494882 BAM harmonized CPTAC3 13d84075-eab0-4cb3-8016-72d060802c37 100d537e58b1ada92e98416635b36a78 {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.miRNA-Seq.S35_L002_R1.T C3N-00167 LUAD miRNA-Seq tumor CPT0013600013 180924_UNC31-K00269_0154_AHWTMLBBXX_CGGAAT_S35_L002_R1_001.unaln.bam 261513548 BAM S35_L002_R1 submitted_unaligned CPTAC3 ca2f66d1-a521-4e30-a77a-25f627c884c0 f156cbd36d30d7b386845a96f8ac8fb4 {"aliquot_tag": "ALQ_b3cec628", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.miRNA-Seq.S37_L002_R1.A C3N-00167 LUAD miRNA-Seq tissue_normal CPT0013630006 181108_UNC31-K00269_0163_BH23TVBBXY_CGGAAT_S37_L002_R1_001.unaln.bam 302239374 BAM S37_L002_R1 submitted_unaligned CPTAC3 ad1e4357-e66c-4c76-b488-3875ec8c8262 f0721848cef938b43c805de8acde1b1d {"aliquot_tag": "ALQ_9d1f7936", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.miRNA-Seq.T.hg38 C3N-00167 LUAD miRNA-Seq tumor CPT0013600013 6633fcc0-6e1a-4f65-9eff-f28a9cb55206_mirnaseq_gdc_realn.bam 288701211 BAM harmonized CPTAC3 4e199933-c2dc-4a86-adda-ebb4654b4e66 7da8ff6fcaa03e7a012cb0e90cb6f38f {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.RNA-Seq.chimeric.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.chimeric.gdc_realn.bam 45086193 BAM chimeric harmonized CPTAC3 6917632a-0743-4689-b7ba-5e2ed79448b2 e104a69d8a46806c55f817081f3ae84a {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.RNA-Seq.chimeric.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.chimeric.gdc_realn.bam 90845803 BAM chimeric harmonized CPTAC3 327cb3b7-1b74-40e1-94e1-76c7fac119bc 30d5a211c8e61dec415d22dfd348bd9b {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.RNA-Seq.genomic.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.genomic.gdc_realn.bam 6212015443 BAM genomic harmonized CPTAC3 30da56f2-0dbf-446f-ac67-81d718be706b 6105bc2216d49437f8dfa0955c986a7b {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.RNA-Seq.genomic.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.genomic.gdc_realn.bam 9314829295 BAM genomic harmonized CPTAC3 907c6a0e-5bd2-4a0b-99f8-1cff51d2c63b 12098c272219221f67fe25173f022df6 {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.RNA-Seq.S21_L006_R1.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3116067115 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 11ffea46-3e8b-4773-ba4b-beba73c1be38 51c08c11eeeb47bf1a79cf0e663527ff {"aliquot_tag": "ALQ_9d1f7936", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.RNA-Seq.S21_L006_R2.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 3270939252 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 dfdd2418-6b07-4c78-8ee3-6ec5f3e8256d a43d422b523699efa1baff1cb940fcd7 {"aliquot_tag": "ALQ_9d1f7936", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.RNA-Seq.S5_L002_R1.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4447593619 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 854da3b4-9736-461f-96b4-8ea145823fdd ad5498beec00b5cc4a86f8eacebe61f8 {"aliquot_tag": "ALQ_b3cec628", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.RNA-Seq.S5_L002_R2.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4866437509 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 bdaf1927-26a6-4947-bdad-0956e610efc0 9c21643a2abd2f5e114602d5c5f3b29e {"aliquot_tag": "ALQ_b3cec628", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.RNA-Seq.transcriptome.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.transcriptome.gdc_realn.bam 8031524496 BAM transcriptome harmonized CPTAC3 025dfd13-ca7d-4333-88d2-a69b64449ac0 fb9156dca498701c9874255cde72afcf {"aliquot_tag": "ALQ_9d1f7936", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.RNA-Seq.transcriptome.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.transcriptome.gdc_realn.bam 12106737584 BAM transcriptome harmonized CPTAC3 3fb411e5-c72d-40dd-835b-447ecf0db76d 919ac1e6b66d83fb33b566a92cfd39be {"aliquot_tag": "ALQ_b3cec628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.WGS.A C3N-00167 LUAD WGS tissue_normal CPT0013630009 CPT0013630009.WholeGenome.RP-1303.bam 72951085323 BAM submitted_aligned CPTAC3 c68eed39-e790-4e29-b15c-489a3412610f 5d37818886e44b2d5e9755757d24fab0 {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.WGS.A.hg38 C3N-00167 LUAD WGS tissue_normal CPT0013630009 466c48cf-e63a-4a3e-9733-bdd2ebbe1f41_wgs_gdc_realn.bam 108565467856 BAM harmonized CPTAC3 6cd41d6d-d4c1-425b-a984-443cbdcef4d8 efd7e9001bd452be68e4cf204a65c440 {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.WGS.N C3N-00167 LUAD WGS blood_normal CPT0016510002 CPT0016510002.WholeGenome.RP-1303.bam 56391285430 BAM submitted_aligned CPTAC3 7c1b9a45-17a4-45cd-9285-eeb31d1cfc68 48d571e901f412fa16604fd82584fba7 {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00167.WGS.N.hg38 C3N-00167 LUAD WGS blood_normal CPT0016510002 ec89929f-7eaa-44e9-bee0-98a39da5ee6f_gdc_realn.bam 81412547620 BAM harmonized CPTAC3 d20b4f56-0016-4bb7-91b6-addf61cc8e03 d81e864d8dbb6f633a1df7c1619a0840 {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00167.WGS.T C3N-00167 LUAD WGS tumor CPT0013600009 CPT0013600009.WholeGenome.RP-1303.bam 64532876192 BAM submitted_aligned CPTAC3 07b0cdfc-6c78-47fc-be97-0f190fa8f900 d219c185eec3a93275ec8494ef491834 {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.WGS.T.hg38 C3N-00167 LUAD WGS tumor CPT0013600009 f674b5fd-beb5-48ec-834e-b6ebdb8e9056_gdc_realn.bam 93309951876 BAM harmonized CPTAC3 0882cca2-f919-4f36-8029-2c2d8fdbeaee ad139a0aa41fc5eafda285b31f9af30f {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.WXS.A C3N-00167 LUAD WXS tissue_normal CPT0013630009 CPT0013630009.WholeExome.RP-1303.bam 38254055998 BAM submitted_aligned CPTAC3 2ab7ddac-7875-4872-b52a-5ac74b090422 2b1170a03fab18a894b85d677c622f8b {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.WXS.A.hg38 C3N-00167 LUAD WXS tissue_normal CPT0013630009 466c48cf-e63a-4a3e-9733-bdd2ebbe1f41_wxs_gdc_realn.bam 51939983669 BAM harmonized CPTAC3 d7958c2b-a368-45a2-ba4d-55bd2bb4fe46 743ea356eafb5f86b620608b39b25268 {"aliquot_tag": "ALQ_da064a7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00167.WXS.N C3N-00167 LUAD WXS blood_normal CPT0016510002 CPT0016510002.WholeExome.RP-1303.bam 26317776839 BAM submitted_aligned CPTAC3 d6d250e2-8fe5-415d-9189-42bfc2ebc607 c8fa4bed15aec71e9edd9d0e2fd78563 {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00167.WXS.N.hg38 C3N-00167 LUAD WXS blood_normal CPT0016510002 ec89929f-7eaa-44e9-bee0-98a39da5ee6f_gdc_realn.bam 35790226008 BAM harmonized CPTAC3 c787fccf-de43-4170-93af-fa09eccdbe10 c9e5d6a6c0b5a949dd3a9c608d3e892c {"aliquot_tag": "ALQ_341eb346", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00167.WXS.T C3N-00167 LUAD WXS tumor CPT0013600009 CPT0013600009.WholeExome.RP-1303.bam 23457201277 BAM submitted_aligned CPTAC3 c4d06b35-9b2a-45d6-868b-872cb0f87066 d2848c6db8c5fa36222da4b1f0b5816e {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00167.WXS.T.hg38 C3N-00167 LUAD WXS tumor CPT0013600009 f674b5fd-beb5-48ec-834e-b6ebdb8e9056_gdc_realn.bam 32000296946 BAM harmonized CPTAC3 96d46109-6c4b-4e88-bcbe-91be63779414 58f341c8caf736ef63b03f2e17e4d8bd {"aliquot_tag": "ALQ_4a001e77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_1e5ec9a4.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0020010009 204372030013_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 7dc13dc4-8848-4ac0-a936-244da8cd5d0e 830457ab2f1d504b764be3e77675a6dc {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_1e5ec9a4.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0020010009 204372030013_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 c3964b12-32a9-4a10-b6e5-ca08f3c6d218 2eebab1e20fa3754ddcd1ee7556cad69 {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_1e5ec9a4.WGS.T C3N-00168 CCRCC WGS tumor CPT0020010009 CPT0020010009.WholeGenome.RP-2158.bam 36100701790 BAM submitted_aligned CPTAC3 a95735c3-3295-4e4b-ad8e-3abc4bb06fbb c042035ccc7374218ac8a6dde6352f1c {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_1e5ec9a4.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0020010009 407da25d-b191-444d-b084-8597d7f27e8e_wgs_gdc_realn.bam 106040843242 BAM harmonized CPTAC3 5e5db86b-53b8-4292-9722-b5fa4f258df9 7f447f954c07f28326876e163db64a8c {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_1e5ec9a4.WXS.T C3N-00168 CCRCC WXS tumor CPT0020010009 CPT0020010009.WholeExome.RP-1303.bam 18836693322 BAM submitted_aligned CPTAC3 dd64aff9-f432-4253-9eef-4be83975bc7e 447b33ce39c419fe62472f112dcb7cc8 {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_1e5ec9a4.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0020010009 407da25d-b191-444d-b084-8597d7f27e8e_wxs_gdc_realn.bam 25390587127 BAM harmonized CPTAC3 c64ae63f-4098-44e5-9bd5-e1fdf6dc7355 f44a44c8deba4cabc4f08061e8121a39 {"aliquot_tag": "DUP_1e5ec9a4", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_233ee014.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0020000009 204367470157_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dc3e9a48-f554-49f7-8fd1-cb31a25a6f09 f8482c68d25b3cc8d23b2d8b09d1d0e1 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_233ee014.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0020000009 204367470157_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 a4045b23-b779-4eb5-bed9-ed2c5bba450f e4d1c1cdfdfe559a70f197a6ec782510 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_233ee014.WGS.T C3N-00168 CCRCC WGS tumor CPT0020000009 CPT0020000009.WholeGenome.RP-2158.bam 21760559988 BAM submitted_aligned CPTAC3 da1133b5-8181-4755-9924-41ab135884f9 af4795b34b7ad88fd7b87d505b3a768a {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_233ee014.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0020000009 25b0db6e-b73d-4171-8f51-80d137dd3707_wgs_gdc_realn.bam 63063496096 BAM harmonized CPTAC3 dbc70484-e919-4902-a03d-0780f9d96eb6 ecb61c54520d028599ce841405070a82 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_233ee014.WXS.T C3N-00168 CCRCC WXS tumor CPT0020000009 CPT0020000009.WholeExome.RP-1303.bam 22513894422 BAM submitted_aligned CPTAC3 12431691-c137-44b1-b3a8-3fc96a3cffde 33ea08a3e27eea5261bc7f1d712f1ac0 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_233ee014.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0020000009 25b0db6e-b73d-4171-8f51-80d137dd3707_wxs_gdc_realn.bam 30970977563 BAM harmonized CPTAC3 4600547c-c0ad-404c-a3a1-c56403cdb325 2f43dfc774017a1863f95d8617bddbd8 {"aliquot_tag": "DUP_233ee014", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_2f56b82d.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0019980009 204367490082_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 af0d43ec-a762-43c3-903e-3be2c62336f5 41e513fdbfe0bfbf46e200f0db946db3 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_2f56b82d.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0019980009 204367490082_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 a56050d4-9124-4b45-b898-6cc07be7db3c d2c95f0c5621fff48765aece9c579523 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_2f56b82d.WGS.T C3N-00168 CCRCC WGS tumor CPT0019980009 CPT0019980009.WholeGenome.RP-2158.bam 19908532545 BAM submitted_aligned CPTAC3 cea7b9ab-40af-4a0d-90ee-db8f653e67c9 d7d5aba759bf0075869fe62015b63865 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_2f56b82d.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0019980009 e08784ff-f64c-44a3-8b35-3facd041574a_wgs_gdc_realn.bam 57217154066 BAM harmonized CPTAC3 63c25c39-de80-49ff-915b-2e5adb8e7e81 c9effc5a7f75f58fbd2df8945b76d49c {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_2f56b82d.WXS.T C3N-00168 CCRCC WXS tumor CPT0019980009 CPT0019980009.WholeExome.RP-1303.bam 19032385394 BAM submitted_aligned CPTAC3 c85d05f7-dc99-4353-b20c-0372389cc296 633b36b952b55c6db4457bd5231eee00 {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_2f56b82d.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0019980009 e08784ff-f64c-44a3-8b35-3facd041574a_wxs_gdc_realn.bam 26953679339 BAM harmonized CPTAC3 727e8aac-19bb-46eb-b68f-e0c7a63b5c61 8c97e1c607aa2269887ad084bd61e31a {"aliquot_tag": "DUP_2f56b82d", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_8ee1d435.miRNA-Seq.S43_L003_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0020010006 200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L003_R1_001.unaln.bam 282708142 BAM S43_L003_R1 submitted_unaligned CPTAC3 011ccbdd-2a34-4132-b53a-169196fd4cb1 b6377e2e5e584fcdce8960a6d8e17abc {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_8ee1d435.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0020010006 bc226434-ead5-400c-b2e0-9eb8abc916f6_mirnaseq_gdc_realn.bam 310367822 BAM harmonized CPTAC3 ec5dd6b3-7596-4db8-abcf-72860bb253dd 834883923baf5eb94bd660c1b8ae6512 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_8ee1d435.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.chimeric.gdc_realn.bam 44174145 BAM chimeric harmonized CPTAC3 5297af3b-15a6-4231-8df2-d1eac0a02d8e 986cb8227d47b9b727c6cd2f1a1b7bb4 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_8ee1d435.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.genomic.gdc_realn.bam 7378479910 BAM genomic harmonized CPTAC3 2df110df-2fe6-4f56-b5b4-d5bce51002fc 7ca629ca1c54deb5c976c2e19df8e2a5 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_8ee1d435.RNA-Seq.S7_L002_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3513323682 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 06b7bc41-372f-4272-974c-3403b43fcc72 a346a8af6469ec7c9ebb8777930c9a56 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_8ee1d435.RNA-Seq.S7_L002_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3996998381 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 15f273ef-9b19-4757-890a-0372f73b4163 f649e238222ccf5cb12d05b11aa146aa {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_8ee1d435.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.transcriptome.gdc_realn.bam 10219606522 BAM transcriptome harmonized CPTAC3 e7162f6f-c95c-4069-9667-fea20a2d81d8 f21772ae814a8aa56ec62aa33d191149 {"aliquot_tag": "DUP_8ee1d435", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_b381fd85.miRNA-Seq.S44_L003_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0020000006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAGCTT_S44_L003_R1_001.unaln.bam 357275569 BAM S44_L003_R1 submitted_unaligned CPTAC3 9003572f-a41c-47ab-bb5c-64474a1e2e62 e5f7fe3982df5bf18c2d0746cde39337 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_b381fd85.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0020000006 0deabf08-73e3-4453-afc3-b960957b8663_mirnaseq_gdc_realn.bam 387053954 BAM harmonized CPTAC3 9b580cba-9a49-45ff-bb4d-f6c5c5cb7ed0 97d5185b6ae63c10a1230771467cd3db {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_b381fd85.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.chimeric.gdc_realn.bam 32423502 BAM chimeric harmonized CPTAC3 7159f751-960c-4c70-b19f-2d415c6c4f23 a0747d91a42a209d0bc87c53224d0e51 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_b381fd85.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.genomic.gdc_realn.bam 7755857380 BAM genomic harmonized CPTAC3 6d712c5c-3a41-4aa3-9fd4-4975fc4634a7 0c2adaa72f6c349db9430038c55b89b9 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_b381fd85.RNA-Seq.S6_L002_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3629532073 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 e97e9e36-b700-4168-af27-f3499251270f 075202d565de03aa52de56aa2e1bb2aa {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_b381fd85.RNA-Seq.S6_L002_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4211308110 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 15de8ab5-f8ea-483c-9ce1-0bde72a71a7a 7e19d1af8b162b458a3a22073153d8e2 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_b381fd85.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.transcriptome.gdc_realn.bam 12129171743 BAM transcriptome harmonized CPTAC3 9f08cc3c-c339-4d48-a549-eba3dc070a04 1f613da154798630d88ea44fb6680354 {"aliquot_tag": "DUP_b381fd85", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_bfe9a5bc.miRNA-Seq.S13_L003_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0019980006 200526_UNC32-K00270_0248_BHH7WFBBXY_GATCAG_S13_L003_R1_001.unaln.bam 199304708 BAM S13_L003_R1 submitted_unaligned CPTAC3 f2e0266a-63ba-4aaf-be09-f3183a98c1e0 6ed238f11c7b4f3ee04ed0fee6da435d {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_bfe9a5bc.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0019980006 f163afe5-3e77-4c04-87df-a3c3a35c7221_mirnaseq_gdc_realn.bam 220856363 BAM harmonized CPTAC3 83beb6c0-8fbd-4364-b6d1-31edfc9aa2d2 4231357025de36d9fc703865cab1487f {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_bfe9a5bc.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.chimeric.gdc_realn.bam 45907275 BAM chimeric harmonized CPTAC3 becd4c01-22bb-4b6f-bd80-d2c859350d99 9ba1f683d3feef090d8109ff4fedfe4d {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_bfe9a5bc.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.genomic.gdc_realn.bam 9117047130 BAM genomic harmonized CPTAC3 86df6df9-f98d-4746-9704-1db3b55f91df b59beb11d7919fdf22620127d92d4869 {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_bfe9a5bc.RNA-Seq.S8_L002_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4364226137 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 7c3020d8-ddfa-4c72-bc6a-04f349f4a1f2 f3b710fcd22e8662372c8ba1916328bc {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_bfe9a5bc.RNA-Seq.S8_L002_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 5091998320 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 381701d8-7529-441b-93c2-657e05b87270 961ceacb93846415ac36bf96195aa556 {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.DUP_bfe9a5bc.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.transcriptome.gdc_realn.bam 12206112551 BAM transcriptome harmonized CPTAC3 082b4d91-df67-4dd0-9dfb-eae3cc810d3a b200314a94f627da0404f8bb37f91040 {"aliquot_tag": "DUP_bfe9a5bc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.MethArray.Green.A C3N-00168 CCRCC Methylation_Array tissue_normal CPT0020020009 204930630081_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e6e22de4-05cb-4a2c-b1bb-8cc84e18beab 02ffa3666e6b6145a5e1780047e6f65b {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.MethArray.Green.T C3N-00168 CCRCC Methylation_Array tumor CPT0019990009 202178770100_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 412dab18-7159-4dfa-add4-91b3b616bf44 06bd951e1be4fe9f11beeede774568f0 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.MethArray.Red.A C3N-00168 CCRCC Methylation_Array tissue_normal CPT0020020009 204930630081_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 d4f4ce1b-4ad0-4ebd-9b59-73e3e48dca7b 039967bb5f3732681dfb1f0d7f1b66aa {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.MethArray.Red.T C3N-00168 CCRCC Methylation_Array tumor CPT0019990009 202178770100_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 52cb9e3f-37dd-46cd-a139-db2295a97802 32d007aa576182309c56c31e18530bb6 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.miRNA-Seq.A.hg38 C3N-00168 CCRCC miRNA-Seq tissue_normal CPT0020020006 e6ed750e-8fb7-4d47-b920-dce0ad0f9d2d_mirnaseq_gdc_realn.bam 203377840 BAM harmonized CPTAC3 034fb153-ca09-45cc-9e95-2458cb09d4f3 d7f03cace03a497e425c217a333460bc {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.miRNA-Seq.S29_L004_R1.T C3N-00168 CCRCC miRNA-Seq tumor CPT0019990006 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L004_R1_001.unaln.bam 264928279 BAM S29_L004_R1 submitted_unaligned CPTAC3 3d5b4bcf-8dfa-4223-97c4-69c0e9b5e53a 31ae39389b3705077f8b6065ed310f0a {"aliquot_tag": "ALQ_82898c0c", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.miRNA-Seq.S48_L004_R1.A C3N-00168 CCRCC miRNA-Seq tissue_normal CPT0020020006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGGCA_S48_L004_R1_001.unaln.bam 183265466 BAM S48_L004_R1 submitted_unaligned CPTAC3 51b4106c-4afd-44e5-9665-dafe1058546b d75f78106c57700c9e417cd520f51b5f {"aliquot_tag": "ALQ_c941aee5", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0019990006 0c78502e-9a81-46f4-9bcc-b2248b516892_mirnaseq_gdc_realn.bam 295600407 BAM harmonized CPTAC3 958bba7f-9efa-436a-8ebf-dfb98d417408 6d111ac9c18b12b49b5e15e19a57e5a8 {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.RNA-Seq.chimeric.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.chimeric.gdc_realn.bam 65533781 BAM chimeric harmonized CPTAC3 699e93c4-b3c4-49f4-87ba-848697bbe723 7a066d0548c64cd9f14307493434d4b5 {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.chimeric.gdc_realn.bam 135807173 BAM chimeric harmonized CPTAC3 a90f4104-ec47-45b4-910d-48fa312b0065 1418e64f5683fe249ccc1148a5a94238 {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.RNA-Seq.genomic.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.genomic.gdc_realn.bam 6766905247 BAM genomic harmonized CPTAC3 28cc5b37-465a-49ea-96e1-0c01835c0925 9a5c170a1244acc045f0df5ac81c45de {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.genomic.gdc_realn.bam 7972243546 BAM genomic harmonized CPTAC3 f71e8b0f-4acb-49b9-9c43-bb2e021876f7 3f52bb88b95da5dc5b33bc7def258a2d {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.RNA-Seq.S15_L004_R1.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R1_001.fastq.gz 3864148159 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 c5ed3de6-ac9f-48c5-923c-79f0d45c0929 abb26f73427021c805e3da98f4244720 {"aliquot_tag": "ALQ_82898c0c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.RNA-Seq.S15_L004_R2.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R2_001.fastq.gz 4262014354 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 b9e5e48d-e2ee-4478-b3fe-5d4a04cc6e8c 215218034f200177fc273f7f75728c83 {"aliquot_tag": "ALQ_82898c0c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.RNA-Seq.S3_L007_R1.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R1_001.fastq.gz 3345283097 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 dbb0640c-e567-48bf-9a78-a36fb22cb612 c0f77954ce458e56403dee34ae05060e {"aliquot_tag": "ALQ_c941aee5", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.RNA-Seq.S3_L007_R2.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R2_001.fastq.gz 3499237068 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 54ebbfd3-243e-4136-a4ec-896075f4a319 37a1c75cfadc4e59aa10c94652930784 {"aliquot_tag": "ALQ_c941aee5", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.RNA-Seq.transcriptome.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.transcriptome.gdc_realn.bam 8820648785 BAM transcriptome harmonized CPTAC3 9380a013-b2a3-455d-ad71-55349aec8699 ef5e715a648a1f7d1593e83d465565f6 {"aliquot_tag": "ALQ_c941aee5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.transcriptome.gdc_realn.bam 10615660338 BAM transcriptome harmonized CPTAC3 0c4c816b-4ef9-4881-93a2-7825152d4588 e22d4d201af7c559ca546aeae73c87c5 {"aliquot_tag": "ALQ_82898c0c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.WGS.A C3N-00168 CCRCC WGS tissue_normal CPT0020020009 CPT0020020009.WholeGenome.RP-1303.bam 55277454894 BAM submitted_aligned CPTAC3 746ff435-62bc-43c2-9f1b-36b2eada4dbf 9f937ad077b07ec331a92b397b1c62fe {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.WGS.A.hg38 C3N-00168 CCRCC WGS tissue_normal CPT0020020009 50b27a5f-b499-43db-bb20-6731a4ab74dc_wgs_gdc_realn.bam 81089571950 BAM harmonized CPTAC3 971c3508-2c02-425f-8da4-6221c3dbe0ec 2c0dc4143b5252fed0f91fe0b4aa6521 {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.WGS.N C3N-00168 CCRCC WGS blood_normal CPT0020920002 CPT0020920002.WholeGenome.RP-1303.bam 70898365568 BAM submitted_aligned CPTAC3 8285c519-1d52-4681-b63b-362b16621298 9dc208b4806a0524d68d241f8a7c811b {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00168.WGS.N.hg38 C3N-00168 CCRCC WGS blood_normal CPT0020920002 9c909c63-b574-4d09-ba11-1cacb92a327a_gdc_realn.bam 103508220184 BAM harmonized CPTAC3 c2075a0a-3061-480e-8a31-2e3bfddc0452 1740fe0a393b952a31b099b9d40510ad {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00168.WGS.T C3N-00168 CCRCC WGS tumor CPT0019990009 CPT0019990009.WholeGenome.RP-1303.bam 63185757433 BAM submitted_aligned CPTAC3 91b64aef-8956-465e-b2ea-a57fc475e953 43333f3dd5a713aed5ea5c54f2ea4f6c {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.WGS.T.hg38 C3N-00168 CCRCC WGS tumor CPT0019990009 b3eac668-b97c-4ca0-a475-4f3415c8eb65_gdc_realn.bam 90946253105 BAM harmonized CPTAC3 486ab4b4-0fc1-4bdf-8820-79ad6193833f e9415fc38dbf0f636b964e847fd7cbe8 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.WXS.A C3N-00168 CCRCC WXS tissue_normal CPT0020020009 CPT0020020009.WholeExome.RP-1303.bam 31715145491 BAM submitted_aligned CPTAC3 95ef0abf-563b-455f-bda3-b21d749edb5a 8f0809f5713fc77a96f94d90d701f04b {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.WXS.A.hg38 C3N-00168 CCRCC WXS tissue_normal CPT0020020009 50b27a5f-b499-43db-bb20-6731a4ab74dc_wxs_gdc_realn.bam 42752810310 BAM harmonized CPTAC3 859b165e-783e-4aff-aba6-839ebadbe45d 1b38a224eb8b3c3c72232c3615812ba4 {"aliquot_tag": "ALQ_59feb374", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00168.WXS.N C3N-00168 CCRCC WXS blood_normal CPT0020920002 CPT0020920002.WholeExome.RP-1303.bam 23080419831 BAM submitted_aligned CPTAC3 37a1d584-f9ef-43d2-ae5e-56cfaa7aed39 ddd08e5dfc0273aa87a1d28068e3dc61 {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00168.WXS.N.hg38 C3N-00168 CCRCC WXS blood_normal CPT0020920002 9c909c63-b574-4d09-ba11-1cacb92a327a_gdc_realn.bam 31284464630 BAM harmonized CPTAC3 1fb9529e-f39e-4033-bd25-5e8a83dd1ea2 e2a9cf1532fff516126a3627f57ecd0a {"aliquot_tag": "ALQ_e9233b34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00168.WXS.T C3N-00168 CCRCC WXS tumor CPT0019990009 CPT0019990009.WholeExome.RP-1303.bam 25929884253 BAM submitted_aligned CPTAC3 1e507e65-94d0-4e1c-b540-f0a7682161e0 463a51b16500970e8fb9ca701c70c238 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00168.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0019990009 b3eac668-b97c-4ca0-a475-4f3415c8eb65_gdc_realn.bam 35776200041 BAM harmonized CPTAC3 8c93a797-778d-4b3f-a018-006a6e45d827 3955d9e03946a2107e28f1674e81af37 {"aliquot_tag": "ALQ_1236919d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.MethArray.Green.A C3N-00169 LUAD Methylation_Array tissue_normal CPT0014930009 203027390034_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 188a30d0-f201-4d53-87c9-5fca0c9babcc 0fe915aae9c96b526a5e894e2d9bd6c3 {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.MethArray.Green.T C3N-00169 LUAD Methylation_Array tumor CPT0014860009 202176300111_R02C01_Grn.idat 13676227 IDAT Green NA CPTAC3 aa51764e-d273-4131-9839-9c83439a9abb bb6d5dd73c4bceb4cada7e8c2f98a0b9 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.MethArray.Red.A C3N-00169 LUAD Methylation_Array tissue_normal CPT0014930009 203027390034_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 a17b38e0-3bd2-476a-bba1-b708092ab30a 51d69b262692f33924a6064b58bf8812 {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.MethArray.Red.T C3N-00169 LUAD Methylation_Array tumor CPT0014860009 202176300111_R02C01_Red.idat 13676227 IDAT Red NA CPTAC3 671cd27a-f9a5-4a63-aa93-f89dcc984d1b b111749cac9d0c5ba2d400d849cced07 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.miRNA-Seq.A.hg38 C3N-00169 LUAD miRNA-Seq tissue_normal CPT0014930006 057a5af2-2916-41b2-88fb-2a77ef9474f6_mirnaseq_gdc_realn.bam 199116726 BAM harmonized CPTAC3 c8305a5f-bd28-41cc-add8-31d4a71b06e9 2da6c8d601fd9e402baabf4af26010e7 {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.miRNA-Seq.S38_L002_R1.A C3N-00169 LUAD miRNA-Seq tissue_normal CPT0014930006 181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L002_R1_001.unaln.bam 179513720 BAM S38_L002_R1 submitted_unaligned CPTAC3 de848b3d-e74b-4028-95fe-8bd6d44b0ece dcf95e08a7a62a01193e9ce1b0e5007d {"aliquot_tag": "ALQ_a9eef56d", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.miRNA-Seq.S7_L005_R1.T C3N-00169 LUAD miRNA-Seq tumor CPT0014860006 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L005_R1_001.unaln.bam 193461238 BAM S7_L005_R1 submitted_unaligned CPTAC3 bbdfb613-c1c0-4b4c-a763-877e9cc7f070 92e9f0518bf6754ac5ed7479799db0c0 {"aliquot_tag": "ALQ_aa52a9b8", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.miRNA-Seq.T.hg38 C3N-00169 LUAD miRNA-Seq tumor CPT0014860006 1a929667-b416-4b94-a7a8-febdfe299556_mirnaseq_gdc_realn.bam 208572483 BAM harmonized CPTAC3 892b3fad-756a-43d9-a5b4-feb7c0a4b10e f2949207966e0c58b30ce32f4a3e5a3c {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.RNA-Seq.chimeric.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.chimeric.gdc_realn.bam 42809450 BAM chimeric harmonized CPTAC3 c7c18e65-ea1c-42f7-8288-8ad9b9ad9414 a1986150a9c6454503de9cb59db1ba43 {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.RNA-Seq.chimeric.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.chimeric.gdc_realn.bam 91750093 BAM chimeric harmonized CPTAC3 798aa7b2-d82b-4758-8ac0-bb0a36da5d1c 93e0a5d303132fd48866dd4320d87931 {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.RNA-Seq.genomic.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.genomic.gdc_realn.bam 6909830414 BAM genomic harmonized CPTAC3 3b5992d8-e89e-4f13-9f16-6d4c90ff09fd b902d3f9a8a2888e4aca11bcc4aef47b {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.RNA-Seq.genomic.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.genomic.gdc_realn.bam 11314632137 BAM genomic harmonized CPTAC3 209d0f6d-6c59-4894-b29d-4a136a87f40f 36a669660cc586f7eda87a48ea5d3330 {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.RNA-Seq.S18_L005_R1.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 3276435555 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 e7cbc140-6693-4e04-8109-9ddd8f4dda7b 6c71f613b2ed36267f66e7e5d574c485 {"aliquot_tag": "ALQ_a9eef56d", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.RNA-Seq.S18_L005_R2.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 3451101401 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 d99434f4-23cb-46bf-bede-f719977004ca a9fa81ae27ede704b3ba430b43ebca9c {"aliquot_tag": "ALQ_a9eef56d", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.RNA-Seq.S6_L008_R1.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R1_001.fastq.gz 5142375990 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 a999524b-0b2b-4c74-a53a-12ac100f22fc 3371f3daeb0eed8aa5a3900fe479937b {"aliquot_tag": "ALQ_aa52a9b8", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.RNA-Seq.S6_L008_R2.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R2_001.fastq.gz 5558564613 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 9159c7d7-2b4c-46b8-8e60-6767546d2068 96ef0a4ab83f454a8de6494334939da7 {"aliquot_tag": "ALQ_aa52a9b8", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.RNA-Seq.transcriptome.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.transcriptome.gdc_realn.bam 7645768813 BAM transcriptome harmonized CPTAC3 93ea829a-ad46-47d0-83ea-c954962a8056 d8b6ea05af8f4799b5ba616d9e0686ab {"aliquot_tag": "ALQ_a9eef56d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.RNA-Seq.transcriptome.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.transcriptome.gdc_realn.bam 13398685777 BAM transcriptome harmonized CPTAC3 1b0f1e4b-d083-4e7c-98a8-7544e5d809ff d5d31957423fe59a8747cbc5895e0d8c {"aliquot_tag": "ALQ_aa52a9b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.WGS.A C3N-00169 LUAD WGS tissue_normal CPT0014930009 CPT0014930009.WholeGenome.RP-1303.bam 51434080676 BAM submitted_aligned CPTAC3 70244afb-1e6c-4118-bcbf-6e859bf5dcfc fc215a97c7316d5e64c8b057b681c92a {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.WGS.A.hg38 C3N-00169 LUAD WGS tissue_normal CPT0014930009 d4c71407-3c20-4063-ba8d-686f508d5bb2_wgs_gdc_realn.bam 75260295235 BAM harmonized CPTAC3 8a774b13-5bf4-40c3-924a-cb1468b8d237 7b5c9f037c7fafbcd02553e8a396afbc {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.WGS.N C3N-00169 LUAD WGS blood_normal CPT0016620002 CPT0016620002.WholeGenome.RP-1303.bam 63192525059 BAM submitted_aligned CPTAC3 a27f0845-3f50-4aa9-85a3-6e8ffc5d81d3 7456a5c24e5873c0d96e80613946a014 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00169.WGS.N.hg38 C3N-00169 LUAD WGS blood_normal CPT0016620002 5b628c05-f250-42e1-a4fb-51bc68e3290e_gdc_realn.bam 90910737971 BAM harmonized CPTAC3 512f7752-fe90-4858-b937-6bb4b76ef75c a898e3b82afd6131b25993a141b77de9 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00169.WGS.T C3N-00169 LUAD WGS tumor CPT0014860009 CPT0014860009.WholeGenome.RP-1303.bam 56666416331 BAM submitted_aligned CPTAC3 5fcbacac-fe36-419b-bf12-281db74aabe8 e69faf3f89459802a7b3c43efd564af5 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.WGS.T.hg38 C3N-00169 LUAD WGS tumor CPT0014860009 c46cbf07-918a-4264-bc21-21c0b95befd2_gdc_realn.bam 83127837132 BAM harmonized CPTAC3 8ece3583-e956-4bb5-ab5a-e86e86556997 c8614de71cd478ea02b57503892b4a4d {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.WXS.A C3N-00169 LUAD WXS tissue_normal CPT0014930009 CPT0014930009.WholeExome.RP-1303.bam 35925824690 BAM submitted_aligned CPTAC3 cbb12b64-bdea-4065-8611-cb33c4477ee1 351948aaeab5185eba3657eb9388c35f {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.WXS.A.hg38 C3N-00169 LUAD WXS tissue_normal CPT0014930009 d4c71407-3c20-4063-ba8d-686f508d5bb2_wxs_gdc_realn.bam 49526686538 BAM harmonized CPTAC3 6e3a08f0-018d-4787-8f96-62994f7b8503 80ea17cdd5204ac8ebf40f526dd0d632 {"aliquot_tag": "ALQ_3951e8fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00169.WXS.N C3N-00169 LUAD WXS blood_normal CPT0016620002 CPT0016620002.WholeExome.RP-1303.bam 29613837939 BAM submitted_aligned CPTAC3 36ad5ecc-8ea6-4c98-9022-a18aefcab7c4 dd78c5babf93cd96aad2e20d03ba3db6 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00169.WXS.N.hg38 C3N-00169 LUAD WXS blood_normal CPT0016620002 5b628c05-f250-42e1-a4fb-51bc68e3290e_gdc_realn.bam 40775738887 BAM harmonized CPTAC3 9747802e-c40f-45cc-b79f-d5308141b839 95fab9c6c4e23683f38dcbeb054480f3 {"aliquot_tag": "ALQ_f52abb38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00169.WXS.T C3N-00169 LUAD WXS tumor CPT0014860009 CPT0014860009.WholeExome.RP-1303.bam 24934499360 BAM submitted_aligned CPTAC3 d54aab44-43ef-4987-8b07-9da1f4e40a5f c68b1093f45831e2bfa7b73294b7d867 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00169.WXS.T.hg38 C3N-00169 LUAD WXS tumor CPT0014860009 c46cbf07-918a-4264-bc21-21c0b95befd2_gdc_realn.bam 34198378303 BAM harmonized CPTAC3 dc29c7ad-da85-4dbe-84ba-c5fdaa80597e 4dc86c777e069dd9487b2984ab3631e8 {"aliquot_tag": "ALQ_3aedb429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.ADD_d0c52957.miRNA-Seq.S6_L005_R1.T C3N-00175 LUAD miRNA-Seq tumor CPT0013880006 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L005_R1_001.unaln.bam 214079390 BAM S6_L005_R1 submitted_unaligned CPTAC3 2e545870-cd24-4067-a4de-72fbb531377a 9ff8709f05122cfeb5f09d0675429d21 {"aliquot_tag": "ADD_d0c52957", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.ADD_d0c52957.miRNA-Seq.T.hg38 C3N-00175 LUAD miRNA-Seq tumor CPT0013880006 4d5dc10f-18e3-43b8-beb5-ed35bd62de6f_mirnaseq_gdc_realn.bam 234212759 BAM harmonized CPTAC3 a4f1d4f6-a7d8-4d8b-a392-7785ff01386a 5389ba73efcf472b57b9a6b858067952 {"aliquot_tag": "ADD_d0c52957", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.MethArray.Green.A C3N-00175 LUAD Methylation_Array tissue_normal CPT0013910008 203028200034_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d94d4809-a27e-461d-8eef-e43e7ca1a08d b0814297889cfaba53c1ef36064a8e48 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.MethArray.Green.T C3N-00175 LUAD Methylation_Array tumor CPT0013880009 202176290047_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 28205800-4b06-4ef8-9ac4-3ca14be784bb d72cdb79543082c2cf0fe3fd075de67d {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.MethArray.Red.A C3N-00175 LUAD Methylation_Array tissue_normal CPT0013910008 203028200034_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 d925f7d1-de6c-449b-bc8f-310856a3e005 0b6ce9e8f41a220192d7a2b5f9413890 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.MethArray.Red.T C3N-00175 LUAD Methylation_Array tumor CPT0013880009 202176290047_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b02d3cfd-52a5-4bae-b312-f5263f538316 809923e347cbf9d0ecff3d2623604264 {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.miRNA-Seq.A.hg38 C3N-00175 LUAD miRNA-Seq tissue_normal CPT0013910005 5d11923b-f615-4014-be9a-af3d007940bb_mirnaseq_gdc_realn.bam 208058778 BAM harmonized CPTAC3 b9cc7c78-9002-438e-8a2c-6034344072c5 91d6f38301a9a892b9845b3ec592dbff {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.miRNA-Seq.S47_L002_R1.A C3N-00175 LUAD miRNA-Seq tissue_normal CPT0013910005 181108_UNC31-K00269_0163_BH23TVBBXY_TCGAAG_S47_L002_R1_001.unaln.bam 184453785 BAM S47_L002_R1 submitted_unaligned CPTAC3 6dc7f348-15f1-4f04-b53a-53e057aadc29 8fcd44a111996702e9aeb782e6c09513 {"aliquot_tag": "ALQ_8f80c939", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.RNA-Seq.chimeric.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.chimeric.gdc_realn.bam 59266497 BAM chimeric harmonized CPTAC3 656ed925-dc92-4039-a445-ffb4fb1e01bc a5c56d5623abb93e86cb51a95bd0dded {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.RNA-Seq.chimeric.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.chimeric.gdc_realn.bam 46658204 BAM chimeric harmonized CPTAC3 ae68238d-e804-422d-95a3-ccab5ba740f5 3d48d34af5404385022aa0669a1aa3c1 {"aliquot_tag": "ALQ_b9b4ec99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.RNA-Seq.genomic.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.genomic.gdc_realn.bam 7216302327 BAM genomic harmonized CPTAC3 fc05e42e-036e-4e9c-881a-e4358165fae4 d85e210dc20b9ec932a2a54a84f37af5 {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.RNA-Seq.genomic.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.genomic.gdc_realn.bam 10849229706 BAM genomic harmonized CPTAC3 c362abb7-4ad9-44ca-90a4-0cc75df3763e b3060f5738c453eb453842bef2bfb39f {"aliquot_tag": "ALQ_b9b4ec99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.RNA-Seq.S10_L003_R1.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 4032180329 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 2bc03bbd-a5ad-472b-9b07-9eb7c4139a7b 7852e6884403c835a63b2dd51a47b7c0 {"aliquot_tag": "ALQ_b9b4ec99", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.RNA-Seq.S10_L003_R2.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 4028284906 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 ff2a0fdc-1273-4b4d-bf82-18edeff7e15e 0d22761fad1a097e56a883326d91d4ed {"aliquot_tag": "ALQ_b9b4ec99", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.RNA-Seq.S15_L004_R1.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R1_001.fastq.gz 3270200911 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 0a5b7b7e-c473-4b8d-a522-898fad4ce3f5 46d6c3ae61f1b80b61dd81bea9996edd {"aliquot_tag": "ALQ_8f80c939", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.RNA-Seq.S15_L004_R2.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R2_001.fastq.gz 3455747042 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 0fcd97be-12a5-4bd1-83b8-13f1acc67931 6db3a73d1a034a0aed43b61fc8bdfe7a {"aliquot_tag": "ALQ_8f80c939", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.RNA-Seq.transcriptome.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.transcriptome.gdc_realn.bam 7308848016 BAM transcriptome harmonized CPTAC3 4b400ef3-4417-4618-9054-f002cf1e5b4c 56e6d62dc042227cef07126f9fb3250a {"aliquot_tag": "ALQ_8f80c939", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.RNA-Seq.transcriptome.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.transcriptome.gdc_realn.bam 7453969316 BAM transcriptome harmonized CPTAC3 0dcbf8c3-95a1-4ccb-a751-ded95936a0e5 df19ebb7658181866aa6527281d47b47 {"aliquot_tag": "ALQ_b9b4ec99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.WGS.A C3N-00175 LUAD WGS tissue_normal CPT0013910008 CPT0013910008.WholeGenome.RP-1303.bam 53876786195 BAM submitted_aligned CPTAC3 7658a7ec-24c1-4e76-9c04-71f189474c8a 56b3a6c65527960675d08a47da25d9f9 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.WGS.A.hg38 C3N-00175 LUAD WGS tissue_normal CPT0013910008 1c2f8561-ee00-4a24-ab6b-1a8dbb217c22_wgs_gdc_realn.bam 79801921461 BAM harmonized CPTAC3 a5358892-785c-42d6-a9f2-a7ebab668e86 1b773f25f899bd7f48137e5bfe8f515a {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.WGS.N C3N-00175 LUAD WGS blood_normal CPT0016600002 CPT0016600002.WholeGenome.RP-1303.bam 61278755456 BAM submitted_aligned CPTAC3 0bc9c0c8-ad4d-48eb-8dce-77283559e8e8 ead8a7333c3465cffcc2c236b185042d {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00175.WGS.N.hg38 C3N-00175 LUAD WGS blood_normal CPT0016600002 6597d396-2d89-4fc9-b95a-03945f2de357_gdc_realn.bam 88977583390 BAM harmonized CPTAC3 b6d1587d-6b28-404a-b179-969c4d7c20cc 26670d0f03cefd1fb6ca8a2ed55720c6 {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00175.WGS.T C3N-00175 LUAD WGS tumor CPT0013880009 CPT0013880009.WholeGenome.RP-1303.bam 60091651175 BAM submitted_aligned CPTAC3 6936007d-339d-4e88-ab25-41e0e3588f76 284740af6807cbe3775238397217f31a {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.WGS.T.hg38 C3N-00175 LUAD WGS tumor CPT0013880009 0750c130-b7f0-4f82-9579-188f3e1705e0_gdc_realn.bam 87305266378 BAM harmonized CPTAC3 1a42a490-4fec-4580-9c98-5f09f2c6e1e8 336dfdbf667c989d36c9d19fba86cc24 {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.WXS.A C3N-00175 LUAD WXS tissue_normal CPT0013910008 CPT0013910008.WholeExome.RP-1303.bam 29334461483 BAM submitted_aligned CPTAC3 c81739ab-a4d2-45b9-ac69-009a5319adf9 6c703a709382c55e4010058c9fbf2c1c {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.WXS.A.hg38 C3N-00175 LUAD WXS tissue_normal CPT0013910008 1c2f8561-ee00-4a24-ab6b-1a8dbb217c22_wxs_gdc_realn.bam 39865354609 BAM harmonized CPTAC3 0608421f-4270-4955-8107-5ddee052c00e 22740a0356b0b01351075dcf98007f39 {"aliquot_tag": "ALQ_f131b584", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00175.WXS.N C3N-00175 LUAD WXS blood_normal CPT0016600002 CPT0016600002.WholeExome.RP-1303.bam 28208345401 BAM submitted_aligned CPTAC3 93258bef-4417-4013-a958-ed7f17fdac24 c2a0ae623af7530af36d182140cd9c40 {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00175.WXS.N.hg38 C3N-00175 LUAD WXS blood_normal CPT0016600002 6597d396-2d89-4fc9-b95a-03945f2de357_gdc_realn.bam 38865744717 BAM harmonized CPTAC3 24538492-8d08-4e27-a491-5777be4e7ef7 1a12b983dfaa5347452b1bb6863b7cc4 {"aliquot_tag": "ALQ_8feae858", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00175.WXS.T C3N-00175 LUAD WXS tumor CPT0013880009 CPT0013880009.WholeExome.RP-1303.bam 24433804525 BAM submitted_aligned CPTAC3 c21346db-461c-4a13-a748-254ff0d5ac6d 068940115956deaa78f618db11d9b63a {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00175.WXS.T.hg38 C3N-00175 LUAD WXS tumor CPT0013880009 0750c130-b7f0-4f82-9579-188f3e1705e0_gdc_realn.bam 33129120813 BAM harmonized CPTAC3 95010f7e-be2f-43c0-b865-99fe950b2aac 6f7dde321fe6a42da0785741ae33bec5 {"aliquot_tag": "ALQ_407a34c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_45bd0790.miRNA-Seq.S37_L003_R1.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020110006 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L003_R1_001.unaln.bam 296557040 BAM S37_L003_R1 submitted_unaligned CPTAC3 69762e2a-0ebe-4992-b488-b2254a56fc73 a0c4a7b3e502dd8bef599ff11b5e0b77 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_45bd0790.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020110006 b7012c66-1737-4039-b773-6f86acc15a53_mirnaseq_gdc_realn.bam 324585628 BAM harmonized CPTAC3 23a0facc-55b6-409e-8648-a3f59c89c860 50a128c1004c4d7d989cd492a2e97e43 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_45bd0790.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.chimeric.gdc_realn.bam 67379430 BAM chimeric harmonized CPTAC3 e3442666-18dc-4f06-b6dd-57826561687d 4231250a57f3739324e7c316c9072ad8 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_45bd0790.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.genomic.gdc_realn.bam 6772079184 BAM genomic harmonized CPTAC3 1f342cd2-1f5f-4126-96d5-aa8a87d95f1d 78973b48e565ddce89184b7cf5034350 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_45bd0790.RNA-Seq.S10_L003_R1.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3145536294 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 5168c8a9-b730-40ea-aab2-8ef26109a4e0 1f71872041a5688f83c75a7642cca2d3 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_45bd0790.RNA-Seq.S10_L003_R2.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3680735728 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 d4133ba7-00da-4152-9808-f7ae0c7f56dd 97675854c26af7607b2ab2316679734d {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_45bd0790.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.transcriptome.gdc_realn.bam 9229375362 BAM transcriptome harmonized CPTAC3 11b4f75e-2b8c-4024-b395-fdc88cf440e2 8e9866e6269bc3a0dc37c6fc87ec3f78 {"aliquot_tag": "DUP_45bd0790", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_78dd2e20.miRNA-Seq.S41_L003_R1.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020100006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L003_R1_001.unaln.bam 252516870 BAM S41_L003_R1 submitted_unaligned CPTAC3 d4160895-9eb9-4926-a951-7abd4496d2cb bdcf9d4f81bd41350b8c92a9c1880e96 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_78dd2e20.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020100006 ef936a66-c615-40f8-a453-5a9fd3a6c66a_mirnaseq_gdc_realn.bam 277438668 BAM harmonized CPTAC3 9ead9508-e3c0-49d5-a104-0d3634bd3ef0 38ef2d744a6bdccffda2a2e43451ca84 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_78dd2e20.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.chimeric.gdc_realn.bam 60576615 BAM chimeric harmonized CPTAC3 8bbe73df-66c1-4bd9-8767-6fb275a1dadb 87821b56e68b410851a97c42b4db7a55 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_78dd2e20.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.genomic.gdc_realn.bam 8172206994 BAM genomic harmonized CPTAC3 1dfb622c-2f64-448b-a297-48ea1b23c150 601fec8a09c4b8dafe0e0d30848aee0e {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_78dd2e20.RNA-Seq.S5_L002_R1.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 3912700020 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 159f5da6-9d77-46ca-9686-54a96c23a746 3fd7bd18a9a92a1d1a9bf63ef32c4e34 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_78dd2e20.RNA-Seq.S5_L002_R2.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4483396676 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 91158ace-2be6-4c55-9843-3ba72f96210e 56bc32f9910a6ab06443202f57adf23c {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_78dd2e20.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.transcriptome.gdc_realn.bam 11360843616 BAM transcriptome harmonized CPTAC3 32d2bb16-2140-4029-8493-a0d242799189 12d1dc6089222dbf6a1ee2cdcd2db988 {"aliquot_tag": "DUP_78dd2e20", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_d5021a01.MethArray.Green.T C3N-00177 CCRCC Methylation_Array tumor CPT0020110009 204372030127_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5dbad71a-9e2f-4fbd-9b43-a93aa49871e1 5c45a3d0f9afc209315f65f081da1d44 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_d5021a01.MethArray.Red.T C3N-00177 CCRCC Methylation_Array tumor CPT0020110009 204372030127_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 650b2380-5cb8-4293-9962-37751da2eb9b 4819e7ba19cebe44cf8321ac77bbe4c6 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_d5021a01.WGS.T C3N-00177 CCRCC WGS tumor CPT0020110009 CPT0020110009.WholeGenome.RP-2158.bam 27213331894 BAM submitted_aligned CPTAC3 b30c9b4f-bc93-4d2d-a825-a26a1e36e109 6eac431e62b7115101d9bf2cea512649 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_d5021a01.WGS.T.hg38 C3N-00177 CCRCC WGS tumor CPT0020110009 191d812e-c618-4fb1-a76f-5955cc05dfe7_wgs_gdc_realn.bam 85377431780 BAM harmonized CPTAC3 a3989483-e1b2-42e7-a2a0-0c28be90ea91 0ac694a0e8ffaa6d60c97076522580f9 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_d5021a01.WXS.T C3N-00177 CCRCC WXS tumor CPT0020110009 CPT0020110009.WholeExome.RP-1303.bam 42726526811 BAM submitted_aligned CPTAC3 42cecb4e-94d3-42ad-bf0e-7842d5613584 b6a76b6c0c35fa4e9dfbeae63d4466a4 {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_d5021a01.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020110009 191d812e-c618-4fb1-a76f-5955cc05dfe7_wxs_gdc_realn.bam 58215211935 BAM harmonized CPTAC3 7e305b0a-ceaf-4202-b0ca-5b66858db2b3 25bfe291eae044165bf75deeddd4f63a {"aliquot_tag": "DUP_d5021a01", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_e86233b1.MethArray.Green.T C3N-00177 CCRCC Methylation_Array tumor CPT0020100009 204372030015_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 fb185869-c601-4b10-a7db-d29290abb158 891de13410a2bd6fae6020c410279d54 {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_e86233b1.MethArray.Red.T C3N-00177 CCRCC Methylation_Array tumor CPT0020100009 204372030015_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 f90a1a63-9670-46b4-87b3-e4559d65c14a e21e74e96a40f2380b3e7c37a1e7379b {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_e86233b1.WGS.T C3N-00177 CCRCC WGS tumor CPT0020100009 CPT0020100009.WholeGenome.RP-2158.bam 26061030355 BAM submitted_aligned CPTAC3 028aba2f-bc3e-4c56-acee-ddd7d5672506 a5855c6b7a8ca5169140659c2b3723c3 {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_e86233b1.WGS.T.hg38 C3N-00177 CCRCC WGS tumor CPT0020100009 9acbf83f-06fb-4cd0-907c-48265a2267e7_wgs_gdc_realn.bam 79865488348 BAM harmonized CPTAC3 d2571876-11d3-4fae-80fd-d1b2326a4297 08afac545dc1a39f16ab85db2c5e6d29 {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_e86233b1.WXS.T C3N-00177 CCRCC WXS tumor CPT0020100009 CPT0020100009.WholeExome.RP-1303.bam 23339788892 BAM submitted_aligned CPTAC3 aae33b25-9b1c-4cb6-bb84-355ac6d327dd d041a5ebae8c8dbeeb70f54d07bd74ff {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.DUP_e86233b1.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020100009 9acbf83f-06fb-4cd0-907c-48265a2267e7_wxs_gdc_realn.bam 32605127052 BAM harmonized CPTAC3 cfa77a27-2dbd-408b-ab9b-a4cbfd3fc8aa e4c55c3fc1e01401984e95ba15735c0f {"aliquot_tag": "DUP_e86233b1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.MethArray.Green.A C3N-00177 CCRCC Methylation_Array tissue_normal CPT0020130009 204930640108_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f9a38d7a-3d66-4450-82d3-a36a16c75bda 7f4706748e560932826f2ece820bcc07 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.MethArray.Green.T C3N-00177 CCRCC Methylation_Array tumor CPT0020120009 202163530120_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2e2ab89d-69cd-4444-b362-132710728236 fb795354a15ded3dc82ecd9599c74e76 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.MethArray.Red.A C3N-00177 CCRCC Methylation_Array tissue_normal CPT0020130009 204930640108_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 8fdcc6f0-fc49-4c4b-83d4-dc4d94dc7168 a4522163fff235957c925e2bc7778e36 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.MethArray.Red.T C3N-00177 CCRCC Methylation_Array tumor CPT0020120009 202163530120_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 37c14ea5-039b-4d47-be5d-b4393cfc07ae 598d0f391d3c17913c4ba0ff696c36f6 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.miRNA-Seq.A.hg38 C3N-00177 CCRCC miRNA-Seq tissue_normal CPT0020130006 2f256d82-3292-46ed-895d-1dd93157b9cf_mirnaseq_gdc_realn.bam 194262654 BAM harmonized CPTAC3 5c607d02-4066-43de-9dc0-e11eec99cd4e 9c10b81eff3cee22e037047a57fcc176 {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.miRNA-Seq.S1_L003_R1.A C3N-00177 CCRCC miRNA-Seq tissue_normal CPT0020130006 181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L003_R1_001.unaln.bam 175724852 BAM S1_L003_R1 submitted_unaligned CPTAC3 bae96ec4-bd0b-4612-a9be-b4910a352c3e 82d860de5fb2911585cd1eeba28aa8c4 {"aliquot_tag": "ALQ_3f7d54f0", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.miRNA-Seq.S30_L004_R1.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020120006 181012_UNC32-K00270_0124_AH223CBBXY_GATCAG_S30_L004_R1_001.unaln.bam 197900007 BAM S30_L004_R1 submitted_unaligned CPTAC3 03674905-7401-4bb7-97dc-e98860c70f0f fce4497c2bc5842485daa83c81b4d8d1 {"aliquot_tag": "ALQ_21d7d40", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020120006 a4f95d10-ded6-4d2e-98e0-432dad710060_mirnaseq_gdc_realn.bam 216231235 BAM harmonized CPTAC3 59f5e113-e0a5-469a-afa1-314dada0eff5 c9aa4b357f36c543f01f5b9489a5bafa {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.RNA-Seq.chimeric.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.chimeric.gdc_realn.bam 58809223 BAM chimeric harmonized CPTAC3 926ea5fa-13b4-4525-8773-bcf41f2fe889 f72b1aefe5804aa88752100957a22aa2 {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.chimeric.gdc_realn.bam 134424434 BAM chimeric harmonized CPTAC3 ad83c349-9c6a-4e7c-8c6a-d0d5315bc8f2 b82eb859eee697e0e89916858d605c2b {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.RNA-Seq.genomic.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.genomic.gdc_realn.bam 8882196611 BAM genomic harmonized CPTAC3 1a11501f-7b75-41da-8d1e-91eadc9be208 8f642bf62981e48601f1fc5a6a967d6a {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.genomic.gdc_realn.bam 9176824088 BAM genomic harmonized CPTAC3 9d66613e-7e7f-4b30-8f60-4f3b102e3d65 43100c00efe53a2c1bde326c7f05b8fd {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.RNA-Seq.S14_L004_R1.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 4263901863 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 b8a098a2-0c11-491d-bc3a-d3c21eb5a586 aa30adf9949628832c2942bd34000ad8 {"aliquot_tag": "ALQ_21d7d40", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.RNA-Seq.S14_L004_R2.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4692956854 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 de966bf1-639f-4af1-ac68-47e9ab1b9c34 e1ce0b46176c2b7c3691732897ebf8db {"aliquot_tag": "ALQ_21d7d40", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.RNA-Seq.S2_L007_R1.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R1_001.fastq.gz 4582858913 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 1b370e43-38d6-41da-b8b2-06f202915f09 4b3d8c80cc152b166578368e85460058 {"aliquot_tag": "ALQ_3f7d54f0", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.RNA-Seq.S2_L007_R2.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R2_001.fastq.gz 4068186798 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 028bb703-224e-41ac-9eef-2733fa19b0e3 836443bb9c90e166cdfa34062771751f {"aliquot_tag": "ALQ_3f7d54f0", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.RNA-Seq.transcriptome.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.transcriptome.gdc_realn.bam 9806723955 BAM transcriptome harmonized CPTAC3 ef3fcb0f-45d7-4bfa-80f6-0d0afc8847fa 44253fd38fe1a683870ef2ecd2ad4863 {"aliquot_tag": "ALQ_3f7d54f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.transcriptome.gdc_realn.bam 12345319975 BAM transcriptome harmonized CPTAC3 961dba90-cd21-4d8a-93bd-472a9f31c1be 25c7dc29c8d6cbc97eb9e6857843beb1 {"aliquot_tag": "ALQ_21d7d40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.WGS.A C3N-00177 CCRCC WGS tissue_normal CPT0020130009 CPT0020130009.WholeGenome.RP-1303.bam 60365621788 BAM submitted_aligned CPTAC3 479f7eae-73ed-4027-a4b9-1716cd0165d9 5c38539661170749cf9e31d1abcf3af1 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.WGS.A.hg38 C3N-00177 CCRCC WGS tissue_normal CPT0020130009 8d2a8ba1-6e6a-427c-b391-174086a6b893_wgs_gdc_realn.bam 87379085146 BAM harmonized CPTAC3 d477f2bd-d0ba-492d-af41-f88c7a7013d2 256e04d2f85e8439dfb4a1d4ff84ab52 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.WGS.N C3N-00177 CCRCC WGS blood_normal CPT0020940002 CPT0020940002.WholeGenome.RP-1303.bam 59013918771 BAM submitted_aligned CPTAC3 5164d953-e7e9-475e-903f-a992bd98a64b 7a10ee565f1a499c2fab7d91bc502e19 {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00177.WGS.N.hg38 C3N-00177 CCRCC WGS blood_normal CPT0020940002 6cff16d4-b72c-4bb6-90ef-6c53ca2b7d65_gdc_realn.bam 86498366016 BAM harmonized CPTAC3 95693d6c-ee55-42df-8c55-b4134347a0dc 534dd9de64a00185fe86e0711230155d {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00177.WGS.T C3N-00177 CCRCC WGS tumor CPT0020120009 CPT0020120009.WholeGenome.RP-1303.bam 58007690003 BAM submitted_aligned CPTAC3 6090cd78-a390-45d7-8ab0-d49c06a20d8f 286d8bccfcc43a81efca046df104031f {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.WGS.T.hg38 C3N-00177 CCRCC WGS tumor CPT0020120009 e4eff64c-93e3-4395-840d-7e7ce9ea9a2e_gdc_realn.bam 85725832424 BAM harmonized CPTAC3 cf3ad856-82dc-4656-9b7c-4c82c13addc9 616ef2cd037621df3eb4d09e9d81aa95 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.WXS.A C3N-00177 CCRCC WXS tissue_normal CPT0020130009 CPT0020130009.WholeExome.RP-1303.bam 23765260708 BAM submitted_aligned CPTAC3 c105c4ba-82d0-4766-88b4-00376ec7696d f0e9388289b8ee5540678bdaf3343a68 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.WXS.A.hg38 C3N-00177 CCRCC WXS tissue_normal CPT0020130009 8d2a8ba1-6e6a-427c-b391-174086a6b893_wxs_gdc_realn.bam 31924485035 BAM harmonized CPTAC3 a7e3808f-ec24-4b3c-8abd-232614362c1d ee7744280ee5ce6a58ca3149e0373d29 {"aliquot_tag": "ALQ_afc24961", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00177.WXS.N C3N-00177 CCRCC WXS blood_normal CPT0020940002 CPT0020940002.WholeExome.RP-1303.bam 23799686430 BAM submitted_aligned CPTAC3 9ce5eae4-8a70-4c8c-ac8f-b4aa6d236980 cc432cbc23bc272dfff513d010587ff1 {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00177.WXS.N.hg38 C3N-00177 CCRCC WXS blood_normal CPT0020940002 6cff16d4-b72c-4bb6-90ef-6c53ca2b7d65_gdc_realn.bam 32589913441 BAM harmonized CPTAC3 eadf6adc-c1f6-4e35-95d4-586f0a56c328 32d4535ea82e941e4c81a2016a099bdb {"aliquot_tag": "ALQ_6663ce94", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00177.WXS.T C3N-00177 CCRCC WXS tumor CPT0020120009 CPT0020120009.WholeExome.RP-1303.bam 20655332266 BAM submitted_aligned CPTAC3 a8445ab3-a412-4a7e-890f-2ff902695614 7482cf8a9ac1faa31f477c1b829c91d4 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00177.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020120009 e4eff64c-93e3-4395-840d-7e7ce9ea9a2e_gdc_realn.bam 28061605475 BAM harmonized CPTAC3 323a01c8-765c-46d4-af30-cd27c56b529b 101b4c16f5b988a7e307fcd434f02bf8 {"aliquot_tag": "ALQ_92a260d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00179.MethArray.Green.T C3N-00179 CM Methylation_Array tumor CPT0019940009 202178770100_R06C01_Grn.idat 13676235 IDAT Green NA CPTAC3 fb8958aa-8382-49b9-a936-01bfb417ac86 65adf800f44d7f06ff4835a66285e045 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.MethArray.Red.T C3N-00179 CM Methylation_Array tumor CPT0019940009 202178770100_R06C01_Red.idat 13676235 IDAT Red NA CPTAC3 061a782d-b688-4ffd-aefe-1538c5ce339b eec109a4ea0a8b16059a4a989bd97240 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.miRNA-Seq.A.hg38 C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 10b609f0-b6e9-40a9-9d11-9a20ebd1fbc4_mirnaseq_gdc_realn.bam 181050678 BAM harmonized CPTAC3 03eff811-0027-4e4d-b3d0-2666983fa6a9 3bfcf2c5eacbc0bf19c83ff7a5b767f8 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.miRNA-Seq.S45_L005_R1.T C3N-00179 CM miRNA-Seq tumor CPT0019940014 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L005_R1_001.unaln.bam 184122693 BAM S45_L005_R1 submitted_unaligned CPTAC3 9bdd17b5-d312-4dd8-90d2-6858d9bd999a e0eb85e3128bc004a7ce09a0e8f91bf5 {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.miRNA-Seq.S48_L002_R1.A C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 181119_UNC31-K00269_0165_AH27WCBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 157988960 BAM S48_L002_R1 submitted_unaligned CPTAC3 08b0ea2d-7e07-4125-8103-f520f2d29eae 9338b84c19cb3ce787f4851699611758 {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.miRNA-Seq.T.hg38 C3N-00179 CM miRNA-Seq tumor CPT0019940014 38590989-1eaf-4665-86c5-f1452536afb4_mirnaseq_gdc_realn.bam 192722490 BAM harmonized CPTAC3 e1935714-a35e-41f5-a5c1-2313ddc36543 58c45f3c6ebc494a741c186d19d9eb25 {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.RNA-Seq.chimeric.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.chimeric.gdc_realn.bam 23565563 BAM chimeric harmonized CPTAC3 c6e615d2-cccf-4c24-ae20-c5e4e4d2b0de 9ec4892fd2e95998731e792dd69deb41 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.RNA-Seq.chimeric.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.chimeric.gdc_realn.bam 77306360 BAM chimeric harmonized CPTAC3 4831222a-44f0-4282-b596-95110837d8db 9fa202043a2489313338ffefd7bb163c {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.RNA-Seq.genomic.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.genomic.gdc_realn.bam 8126581405 BAM genomic harmonized CPTAC3 6fc3617f-7e62-4570-88b6-9fd0239737da 1c64ba20c29457a85cc3dc47123bfb72 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.RNA-Seq.genomic.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.genomic.gdc_realn.bam 8761983609 BAM genomic harmonized CPTAC3 50bf43e6-c03a-40ee-8105-14a0356e7d1f 7eebc2308ecc247650581431e447248e {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.RNA-Seq.S20_L007_R1.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R1_001.fastq.gz 4091212668 FASTQ S20_L007_R1 submitted_unaligned CPTAC3 c69b3f60-5fb1-440d-9793-7ca8fd1dccff a958f73e3006372b66e8653ecd6748cc {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.RNA-Seq.S20_L007_R2.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R2_001.fastq.gz 4188871815 FASTQ S20_L007_R2 submitted_unaligned CPTAC3 7a07e79b-3f83-4cdf-9957-db1cfc0e4617 528c1a833a15207b4adef054b0199604 {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.RNA-Seq.S24_L006_R1.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R1_001.fastq.gz 3731834913 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 252cb045-94a6-4335-9d51-53610564f87c 8a2636e6b20b9ebbbca9a1cede428588 {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.RNA-Seq.S24_L006_R2.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R2_001.fastq.gz 4030516244 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 4e40b7c7-8513-430a-b4a4-5107c563fa1b db3d0a96083dfceb4e1b429b5aba916b {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.RNA-Seq.transcriptome.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.transcriptome.gdc_realn.bam 10000521209 BAM transcriptome harmonized CPTAC3 696ff797-6b82-4148-b34c-480bf2cf80d5 31955f87b8168f6888fdfca01a0d20d6 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.RNA-Seq.transcriptome.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.transcriptome.gdc_realn.bam 10282565582 BAM transcriptome harmonized CPTAC3 38cb58b2-712c-4ed0-b340-7276dae34b79 c26567a792dc99f981e256a83ed6ddfa {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.WGS.A C3N-00179 CM WGS tissue_normal CPT0019960007 CPT0019960007.WholeGenome.RP-1303.bam 61566329644 BAM submitted_aligned CPTAC3 1fe8e64c-8d3c-48e1-a965-8edf3c2c88aa 15b8263adcbdbcaef3893baf19294288 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.WGS.A.hg38 C3N-00179 CM WGS tissue_normal CPT0019960007 16f76fcb-0e0d-4c8a-848a-acd5ecae21f3_wgs_gdc_realn.bam 91277374316 BAM harmonized CPTAC3 a0a68865-2cdf-4e6d-85a6-3d89777f819c 5893c37738118cbc0393ec31f0533c65 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.WGS.N C3N-00179 CM WGS blood_normal CPT0020950002 CPT0020950002.WholeGenome.RP-1303.bam 79165727723 BAM submitted_aligned CPTAC3 6fb26724-5ad9-494c-95cd-72680f6b770b 0e72fdb0cd046e7887b1430479489ebc {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00179.WGS.N.hg38 C3N-00179 CM WGS blood_normal CPT0020950002 12e57dd9-27e5-49a6-b3bd-8f5403d5fd8a_gdc_realn.bam 117336437768 BAM harmonized CPTAC3 c3e5ef34-7b4b-415c-8ac0-54a3c52bbc93 b45df411c4d49ae2f40727eb4fe47e82 {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00179.WGS.T C3N-00179 CM WGS tumor CPT0019940009 CPT0019940009.WholeGenome.RP-1303.bam 85049263077 BAM submitted_aligned CPTAC3 950e7c3d-22e2-4b93-bf03-87ddae34bbb2 bafd9be7079b420eefea6b69e2fbd241 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.WGS.T.hg38 C3N-00179 CM WGS tumor CPT0019940009 0184cb05-f9da-4925-9dc0-0f3d4277cfbb_gdc_realn.bam 126958607323 BAM harmonized CPTAC3 d093aaa8-db7d-4c75-91ef-181679f40c53 b191230ea70c76dba8452c20e49f1e19 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.WXS.A C3N-00179 CM WXS tissue_normal CPT0019960007 CPT0019960007.WholeExome.RP-1303.bam 29196285352 BAM submitted_aligned CPTAC3 e898571a-502a-451b-b5ef-2649c3f798e1 835680486454806ae65263539e01c090 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.WXS.A.hg38 C3N-00179 CM WXS tissue_normal CPT0019960007 16f76fcb-0e0d-4c8a-848a-acd5ecae21f3_wxs_gdc_realn.bam 39774543502 BAM harmonized CPTAC3 4710637f-3154-49a0-8c15-b7d7339b0afc a9372fa302114d38b672706672f79043 {"aliquot_tag": "ALQ_77de2b4b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.WXS.N C3N-00179 CM WXS blood_normal CPT0020950002 CPT0020950002.WholeExome.RP-1303.bam 26257364618 BAM submitted_aligned CPTAC3 56c9e257-a83d-486b-a5b4-c7673cd49471 6131eb0fce769b90728baeadbd898435 {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00179.WXS.N.hg38 C3N-00179 CM WXS blood_normal CPT0020950002 12e57dd9-27e5-49a6-b3bd-8f5403d5fd8a_gdc_realn.bam 35901015195 BAM harmonized CPTAC3 86acbda4-0946-4587-8374-f9a714ccf8a4 50d0ffe7ad50efa28731292aeaa01f05 {"aliquot_tag": "ALQ_5b03e724", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00179.WXS.T C3N-00179 CM WXS tumor CPT0019940009 CPT0019940009.WholeExome.RP-1303.bam 29105230322 BAM submitted_aligned CPTAC3 23dd373f-7142-4c96-b6d1-e8a7200f0c27 d04b6a2840e6cb4edc4ee6c36a5315d2 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00179.WXS.T.hg38 C3N-00179 CM WXS tumor CPT0019940009 0184cb05-f9da-4925-9dc0-0f3d4277cfbb_gdc_realn.bam 40182162952 BAM harmonized CPTAC3 13ce8bbb-86e4-493d-aaba-552ad9f36ad1 e876eaf1e7e164ddb5335a32d77b1c22 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00180.MethArray.Green.A C3N-00180 LUAD Methylation_Array tissue_normal CPT0066810009 203028200023_R06C01_Grn.idat 13676238 IDAT Green NA CPTAC3 0b492eba-0a95-44b8-8395-ffbe0b02ff57 ca98ae48e649fd5e571e5933be3bda3d {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.MethArray.Green.T C3N-00180 LUAD Methylation_Array tumor CPT0066780006 202163530120_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9404b304-66b4-49f7-bb51-3665fa5a5b66 4ec2093987fa10d6c176feac46a730c8 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.MethArray.Red.A C3N-00180 LUAD Methylation_Array tissue_normal CPT0066810009 203028200023_R06C01_Red.idat 13676238 IDAT Red NA CPTAC3 7e812697-b434-4cc0-9a42-9abdb291a884 77b84d0960cec6a468113653ccaedb17 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.MethArray.Red.T C3N-00180 LUAD Methylation_Array tumor CPT0066780006 202163530120_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 7af70b7c-2b63-438f-8bd8-0b1467aa56f9 91e9bd2d24c2cc40910d05fa562b7521 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.miRNA-Seq.A.hg38 C3N-00180 LUAD miRNA-Seq tissue_normal CPT0066810006 6dee0980-d266-442a-bb7c-a42bc0a9d3c8_mirnaseq_gdc_realn.bam 235016716 BAM harmonized CPTAC3 82bb8de8-a719-43ed-a6de-1b3aaa70d5f8 f0fc7080f8e7f8e538dfc806ef75a161 {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.miRNA-Seq.S39_L008_R1.A C3N-00180 LUAD miRNA-Seq tissue_normal CPT0066810006 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L008_R1_001.unaln.bam 212710843 BAM S39_L008_R1 submitted_unaligned CPTAC3 5cf834b5-5512-4602-90c2-b92dc1c2e4ae 53917ad98cd76138df9ac301a70eec27 {"aliquot_tag": "ALQ_85286d98", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.miRNA-Seq.S4_L008_R1.T C3N-00180 LUAD miRNA-Seq tumor CPT0066780009 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L008_R1_001.unaln.bam 294676432 BAM S4_L008_R1 submitted_unaligned CPTAC3 a06da018-37b1-41da-a6c2-87af39aa8c56 ef706c05e0159abbcdd6e4541e5f790d {"aliquot_tag": "ALQ_e9d1a0ad", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.miRNA-Seq.T.hg38 C3N-00180 LUAD miRNA-Seq tumor CPT0066780009 96a4fabc-63e3-46fc-8f72-4a4242399b33_mirnaseq_gdc_realn.bam 326674227 BAM harmonized CPTAC3 85b8833b-6e8d-4736-8e60-34c38cca3b45 c8ba4ed01af923ee374a44e46ca6c449 {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.RNA-Seq.chimeric.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.chimeric.gdc_realn.bam 94354821 BAM chimeric harmonized CPTAC3 2c8ec5c1-b5ce-4ac7-b4d2-c5cfb57c5830 6bc97c304802fdee1329b886e46d6134 {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.RNA-Seq.chimeric.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.chimeric.gdc_realn.bam 146594694 BAM chimeric harmonized CPTAC3 c0c05314-aab4-4c34-8545-91acce991d84 b1d8e0e0525d2ce086f941c5dc6d2aa2 {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.RNA-Seq.genomic.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.genomic.gdc_realn.bam 8586873881 BAM genomic harmonized CPTAC3 3f71b12a-76ed-462a-8c8f-bca3fe1682cf b512c28cbed1972d5c3793b6b1fdfbd2 {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.RNA-Seq.genomic.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.genomic.gdc_realn.bam 9161603634 BAM genomic harmonized CPTAC3 7890ceda-6b90-41f4-ae51-0a63ba42aa49 1bdade32f90ad412b22ba6cae6d8ce1b {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.RNA-Seq.S79_L008_R1.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R1_001.fastq.gz 4098210486 FASTQ S79_L008_R1 submitted_unaligned CPTAC3 3889683a-03a1-47b7-9fb1-99e116f77cad 22dee24b417f9b50d2c05a7434c074ca {"aliquot_tag": "ALQ_85286d98", "sample": "S79", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.RNA-Seq.S79_L008_R2.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R2_001.fastq.gz 4442419919 FASTQ S79_L008_R2 submitted_unaligned CPTAC3 cc5ab0c7-f4a7-4561-96d4-b526e678a2f5 3ec9a082c0a163f61dd49a85e7a4826b {"aliquot_tag": "ALQ_85286d98", "sample": "S79", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.RNA-Seq.S7_L008_R1.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R1_001.fastq.gz 4282379536 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 0f723218-122e-4166-8736-718d17daaa5f d08de05e3c8e68d41446baf042852f7c {"aliquot_tag": "ALQ_e9d1a0ad", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.RNA-Seq.S7_L008_R2.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4513843874 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 1d1a0d32-fefd-4f8a-9d35-31734b685d02 1e203f8b51264e9dd5c0e8a442664091 {"aliquot_tag": "ALQ_e9d1a0ad", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.RNA-Seq.transcriptome.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.transcriptome.gdc_realn.bam 10352549175 BAM transcriptome harmonized CPTAC3 eec2e93b-0ba6-4693-b52a-018d8388b3ae 9a0235beabe57f05d7a7c7f6e1c5d3fa {"aliquot_tag": "ALQ_85286d98", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.RNA-Seq.transcriptome.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.transcriptome.gdc_realn.bam 9491639798 BAM transcriptome harmonized CPTAC3 3fb5cb62-25d3-4864-95a9-1e62f05e71b6 2657bd387c0f5cc052a161116b6d84c0 {"aliquot_tag": "ALQ_e9d1a0ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.Targeted.T C3N-00180 LUAD Targeted_Sequencing tumor CPT0066780006 CPT0066780006.CustomSelection.RP-1303.PDO-18786.bam 5054326496 BAM submitted_aligned CPTAC3 2cc82403-f9b0-4bc2-a498-a3d9e3234b99 ea019aceb3e0d6d41952e9ae51971e2b {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.Targeted.T.hg38 C3N-00180 LUAD Targeted_Sequencing tumor CPT0066780006 1f25a90e-1fea-4361-b8d3-4b14350454dd_targetedsequencing_gdc_realn.bam 6884124166 BAM harmonized CPTAC3 54e91a15-c1a5-48ac-baeb-7a517dfda913 8c60c4306c1c5d27d1b1593ba0a01709 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.WGS.A C3N-00180 LUAD WGS tissue_normal CPT0066810009 CPT0066810009.WholeGenome.RP-1303.bam 62525329360 BAM submitted_aligned CPTAC3 6aadd264-9682-4892-8932-58d9c585e436 c55fab84add4857e2568386546bfebd8 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.WGS.A.hg38 C3N-00180 LUAD WGS tissue_normal CPT0066810009 73b5d550-f522-4d2a-b31d-6316b22c2e29_wgs_gdc_realn.bam 91155003871 BAM harmonized CPTAC3 7129e385-3928-4006-84cd-28b2a599c066 eced8b0df6e5dfbcf948d921675f08b2 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.WGS.N C3N-00180 LUAD WGS blood_normal CPT0071670002 CPT0071670002.WholeGenome.RP-1303.bam 106563005881 BAM submitted_aligned CPTAC3 74d1f36f-ed0c-4ae7-ba08-5b470b6aae57 1e0754b2e4b4428e55af7894537295e7 {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00180.WGS.N.hg38 C3N-00180 LUAD WGS blood_normal CPT0071670002 17383aa4-7eb8-4b1c-9d16-85970c936aba_gdc_realn.bam 168072072373 BAM harmonized CPTAC3 52de0627-016c-459d-8a66-3ed9755f9c51 fc1b98b4c0bd95058da1f435b7868f12 {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00180.WGS.T C3N-00180 LUAD WGS tumor CPT0066780006 CPT0066780006.WholeGenome.RP-1303.bam 63676463269 BAM submitted_aligned CPTAC3 52950961-9da1-43b6-b0ae-eab01c7c0578 3658914a74a0334ddd9b325ead087f87 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.WGS.T.hg38 C3N-00180 LUAD WGS tumor CPT0066780006 1f25a90e-1fea-4361-b8d3-4b14350454dd_gdc_realn.bam 93964203341 BAM harmonized CPTAC3 1c9d3ed5-a002-41a6-a8fe-6d20faaf75a0 b6bec47a17c485c02cbf6bf445fb880f {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.WXS.A C3N-00180 LUAD WXS tissue_normal CPT0066810009 CPT0066810009.WholeExome.RP-1303.bam 33054755742 BAM submitted_aligned CPTAC3 a092cc8d-c1ed-42fa-b3ee-40d502087128 77a50fb350bb7bd3aa0f7072ab6ecbc5 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.WXS.A.hg38 C3N-00180 LUAD WXS tissue_normal CPT0066810009 73b5d550-f522-4d2a-b31d-6316b22c2e29_wxs_gdc_realn.bam 44639736620 BAM harmonized CPTAC3 7c36c6db-ab60-4e7b-abcd-04edd8b9d73d 231791201b744f170c425699ee09b6e4 {"aliquot_tag": "ALQ_15977009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00180.WXS.N C3N-00180 LUAD WXS blood_normal CPT0071670002 CPT0071670002.WholeExome.RP-1303.bam 37981556510 BAM submitted_aligned CPTAC3 a508f569-c727-45b9-910c-a0873a41d730 001f42bea354533a68da43a9944a8bfc {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00180.WXS.N.hg38 C3N-00180 LUAD WXS blood_normal CPT0071670002 17383aa4-7eb8-4b1c-9d16-85970c936aba_gdc_realn.bam 51703140057 BAM harmonized CPTAC3 4c397512-4468-40e1-aca6-d26ab9da1aa3 c2d47a857cca8c4c03e8d31007b1b99a {"aliquot_tag": "ALQ_3e020341", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00180.WXS.T C3N-00180 LUAD WXS tumor CPT0066780006 CPT0066780006.WholeExome.RP-1303.bam 29404094131 BAM submitted_aligned CPTAC3 d2a9ccbb-514a-4ced-b6a5-2b94489e46d9 a4d6aacc70a30ff6214aa935b060bc31 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00180.WXS.T.hg38 C3N-00180 LUAD WXS tumor CPT0066780006 1f25a90e-1fea-4361-b8d3-4b14350454dd_gdc_realn.bam 40356955153 BAM harmonized CPTAC3 163dbc0f-5a12-40e7-8b62-880e21db7cdb 2ddb9ff693f9805227f1293b947ad2a5 {"aliquot_tag": "ALQ_796ebd3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_2b767750.MethArray.Green.T C3N-00194 CCRCC Methylation_Array tumor CPT0014180016 204372030076_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 086e61f9-2ea0-429a-929f-b41f394e7262 6da9fbae923a0208ad8d468c3075ae5d {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_2b767750.MethArray.Red.T C3N-00194 CCRCC Methylation_Array tumor CPT0014180016 204372030076_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 63f62462-e276-4816-9bf7-5e64787066a1 78de3a7ffeff2ab0fe4a3cd2cb60c5b2 {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_2b767750.WGS.T C3N-00194 CCRCC WGS tumor CPT0014180016 CPT0014180016.WholeGenome.RP-2158.bam 25484810737 BAM submitted_aligned CPTAC3 1940d1d6-f01d-4ad2-bb06-92dc46ff9b37 519baf4946dc5dcd31c3a6aa5bb8bf86 {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_2b767750.WGS.T.hg38 C3N-00194 CCRCC WGS tumor CPT0014180016 dcd9f76f-2677-45ee-b940-43a6d6bda211_wgs_gdc_realn.bam 74676742699 BAM harmonized CPTAC3 5bb6943f-ac96-4f9f-af57-641777931fa4 f1cffff0515dfea152899d9a16a715ba {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_2b767750.WXS.T C3N-00194 CCRCC WXS tumor CPT0014180016 CPT0014180016.WholeExome.RP-1303.bam 17705252447 BAM submitted_aligned CPTAC3 1e36b6c9-824c-430b-a1fa-77d176f03cbb dcbd5df4c0db50b6ee24f73e5caa1d9c {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_2b767750.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014180016 dcd9f76f-2677-45ee-b940-43a6d6bda211_wxs_gdc_realn.bam 24747238914 BAM harmonized CPTAC3 e4b47a2f-5808-4e69-a515-a90cf2f680c5 f1e7fff18182bb6cc9f7c6adf352ada4 {"aliquot_tag": "DUP_2b767750", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_a38c476e.miRNA-Seq.S11_L001_R1.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014150013 200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L001_R1_001.unaln.bam 354369445 BAM S11_L001_R1 submitted_unaligned CPTAC3 5eaf89e1-2e7b-4cf2-8f16-86186018e889 9c977deba896873cff52479e06550e6f {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_a38c476e.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014150013 ba864e1e-dc27-4fe6-b7ca-cbf0ef542db1_mirnaseq_gdc_realn.bam 376906707 BAM harmonized CPTAC3 93f00502-6756-4d3f-ada9-17294cf63cc3 8ec602c1e4e90c2d8de90fe3a4a9f4c6 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_a38c476e.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.chimeric.gdc_realn.bam 58196191 BAM chimeric harmonized CPTAC3 6bacf4d1-e885-470e-8b37-36fb1f06893d 0c3db30159581d63fa7753549427a774 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_a38c476e.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.genomic.gdc_realn.bam 8437030499 BAM genomic harmonized CPTAC3 18ecc38c-97aa-4702-8584-be73cbdd4fd8 ee6809fbf44208049e67d6837962fec4 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_a38c476e.RNA-Seq.S32_L008_R1.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R1_001.fastq.gz 3845736661 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 30ae7b78-98bd-4813-b118-7ad3f4c08b1d d8723e8d230e655382db9eafc4b59cd3 {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_a38c476e.RNA-Seq.S32_L008_R2.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R2_001.fastq.gz 4609898999 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 0e6a7015-d66e-41e9-8a38-844916f4d874 8b121813351d4a1d8292e9ce8d3aee8d {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_a38c476e.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.transcriptome.gdc_realn.bam 11509493454 BAM transcriptome harmonized CPTAC3 8e0ffa33-5e55-4d8d-8797-628000f29ad5 79579fdf3c48765461f25486b4d7ca7d {"aliquot_tag": "DUP_a38c476e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_cafd82a0.MethArray.Green.T C3N-00194 CCRCC Methylation_Array tumor CPT0014150006 204367490057_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 04b547a0-8925-41bd-90a2-c03fed68b079 c480050cb219a4b6de2772be1ae2e388 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_cafd82a0.MethArray.Red.T C3N-00194 CCRCC Methylation_Array tumor CPT0014150006 204367490057_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 6398a66e-11da-411f-9ba1-ab5d587d9dc7 8e2c4780c2e3a2f199ece6c0fc4e1b75 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_cafd82a0.WGS.T C3N-00194 CCRCC WGS tumor CPT0014150006 CPT0014150006.WholeGenome.RP-2158.bam 25008035493 BAM submitted_aligned CPTAC3 4372c410-6c03-48c6-aed4-8ec390df9a46 0d2218042a3d8261baecf0168da2c000 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_cafd82a0.WGS.T.hg38 C3N-00194 CCRCC WGS tumor CPT0014150006 925f395c-dddd-4771-834b-3cfde3dc615b_wgs_gdc_realn.bam 72587942973 BAM harmonized CPTAC3 447d41fb-811d-440c-a5c3-d482428156a6 663b356a19e0002f42e69a2cd0d63a1a {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_cafd82a0.WXS.T C3N-00194 CCRCC WXS tumor CPT0014150006 CPT0014150006.WholeExome.RP-1303.bam 17787615338 BAM submitted_aligned CPTAC3 63d83032-60b8-4186-9fb9-780c884e37db 22fefd453fadac779a3382a86530287f {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_cafd82a0.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014150006 925f395c-dddd-4771-834b-3cfde3dc615b_wxs_gdc_realn.bam 24536587496 BAM harmonized CPTAC3 ab3a0fa6-6f5b-474a-9521-361e1bc3ef86 67828bf82a9f1d009a00ea3c750121d7 {"aliquot_tag": "DUP_cafd82a0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_ccce5a57.miRNA-Seq.S18_L006_R1.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014180018 201209_UNC32-K00270_0265_AHJ55WBBXY_TCATTC_S18_L006_R1_001.unaln.bam 190736084 BAM S18_L006_R1 submitted_unaligned CPTAC3 f8776aaf-407b-4b4a-ba44-35f10f241a89 1e84349ac8152ad6f183081c361b5855 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_ccce5a57.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014180018 d6badd14-6dc7-49a5-ac1a-7b70c1e7b059_mirnaseq_gdc_realn.bam 207660767 BAM harmonized CPTAC3 d3141102-ff98-4c15-99eb-664eb2c3cd3d c020698d08be64b46aed9bd4b6cf8590 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_ccce5a57.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.chimeric.gdc_realn.bam 56794376 BAM chimeric harmonized CPTAC3 a166bfc3-66a9-47bd-be83-0bbb748cb476 19ec7ae64570ec995994ab1b37def7c0 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_ccce5a57.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.genomic.gdc_realn.bam 7486322740 BAM genomic harmonized CPTAC3 59b9b555-a334-4022-9d49-45f2bef49b08 343290f10751efa6ea8eb1202b96eb30 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_ccce5a57.RNA-Seq.S20_L005_R1.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 3591666060 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 060a52e5-6ab1-4d99-b8b0-673ef07e6fcc 70fa5cd284f6c3e1a955ff9a5da34bf3 {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_ccce5a57.RNA-Seq.S20_L005_R2.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4153593395 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 799cae3c-ac8c-4fd6-aa65-826a415e4fe2 30986e28625a9f4dc63e361a7d6eacba {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.DUP_ccce5a57.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.transcriptome.gdc_realn.bam 10968856577 BAM transcriptome harmonized CPTAC3 b8061828-597b-4b4f-a0f2-9636d6ab69bd 4d7d9cafe6b5c89867b7ea037c88c40c {"aliquot_tag": "DUP_ccce5a57", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.MethArray.Green.A C3N-00194 CCRCC Methylation_Array tissue_normal CPT0014130009 204930640023_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dcc4f6ae-71bd-4c14-a008-0c1e5a0f74a4 e2c3df44c127eb99cbac51c621c7f9f7 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.MethArray.Green.T C3N-00194 CCRCC Methylation_Array tumor CPT0014160006 202178770109_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c85167c7-7804-42de-926e-fb8b99657e3e 8cf0fee3df5125285d58cd7a07b794d0 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.MethArray.Red.A C3N-00194 CCRCC Methylation_Array tissue_normal CPT0014130009 204930640023_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 e7764dad-a78f-421f-9fde-2b968f02ae8b 1a88184b8ad3719d3efc69e8c78de070 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.MethArray.Red.T C3N-00194 CCRCC Methylation_Array tumor CPT0014160006 202178770109_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 6a015b94-23ce-436a-8407-b1bc2d772e2b c2e99335350ed26fcb4d3b84dcc3651c {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.miRNA-Seq.A.hg38 C3N-00194 CCRCC miRNA-Seq tissue_normal CPT0014130006 abe08b03-6b21-4b10-9d44-8cc2765f6980_mirnaseq_gdc_realn.bam 227715524 BAM harmonized CPTAC3 64f311d7-b90e-40af-825a-844059e91c2e 40a746ee9c4786440e06f7d7e36e3564 {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.miRNA-Seq.S17_L003_R1.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014160009 181113_UNC31-K00269_0164_AH23NNBBXY_GACGAC_S17_L003_R1_001.unaln.bam 213056282 BAM S17_L003_R1 submitted_unaligned CPTAC3 de91a0d6-d235-4f68-8023-6545e1f256aa bb2988c1484306422134425eef87ca07 {"aliquot_tag": "ALQ_1de2e5e1", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.miRNA-Seq.S32_L004_R1.A C3N-00194 CCRCC miRNA-Seq tissue_normal CPT0014130006 181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L004_R1_001.unaln.bam 206654645 BAM S32_L004_R1 submitted_unaligned CPTAC3 14938d34-2c4f-491c-aa00-4a16a477821b e7decf106bbdaa21ce6dd9e280da84dd {"aliquot_tag": "ALQ_45bd7700", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014160009 33861799-9692-4d43-9fae-7ff2e5d11ed8_mirnaseq_gdc_realn.bam 233524765 BAM harmonized CPTAC3 352e0e22-61ef-4f75-986f-99fd75f39271 cf34e1c71c50f016f78bdc5a96647c6d {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.RNA-Seq.chimeric.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.chimeric.gdc_realn.bam 85161955 BAM chimeric harmonized CPTAC3 f0e81c32-12f0-47c6-b2fb-cff6ce934704 b8f02d863b8405c251a4e172d05616da {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.chimeric.gdc_realn.bam 159909236 BAM chimeric harmonized CPTAC3 505b5e92-f384-4f8c-a540-e9be8a664132 c9f74c4f873d3b96860a4ebf4ff21f4b {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.RNA-Seq.genomic.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.genomic.gdc_realn.bam 7479199248 BAM genomic harmonized CPTAC3 0c62d8d1-9fd9-4900-8fe5-abf344e79cf6 918fc04a659fb1c1a443b8c60023a3db {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.genomic.gdc_realn.bam 7752622434 BAM genomic harmonized CPTAC3 3a9bf6a4-87af-4b89-925a-61c2938f40dd 948e689b8e2b938e274d0bda2ce802ca {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.RNA-Seq.S18_L007_R1.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R1_001.fastq.gz 4083620064 FASTQ S18_L007_R1 submitted_unaligned CPTAC3 43a866e7-11b6-48b3-81c2-377c378f1dba 0c9011d4f88db599d727b2652391cd0e {"aliquot_tag": "ALQ_1de2e5e1", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.RNA-Seq.S18_L007_R2.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R2_001.fastq.gz 4432478207 FASTQ S18_L007_R2 submitted_unaligned CPTAC3 293d2b6b-a6dd-4849-a306-3bdb55eb8c9f 5d26b582e6be2019e4fe785476665e6c {"aliquot_tag": "ALQ_1de2e5e1", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.RNA-Seq.S51_L006_R1.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R1_001.fastq.gz 3773427215 FASTQ S51_L006_R1 submitted_unaligned CPTAC3 f731dbe4-b17a-4ea3-86b9-b59a81e70774 f7c49539016ff9e494924301aa65eef1 {"aliquot_tag": "ALQ_45bd7700", "sample": "S51", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.RNA-Seq.S51_L006_R2.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R2_001.fastq.gz 4015911822 FASTQ S51_L006_R2 submitted_unaligned CPTAC3 2c87c0be-8651-48c6-bf47-58d04431df4b 1058cff1ec557ccdefede33c4a7a80b7 {"aliquot_tag": "ALQ_45bd7700", "sample": "S51", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.RNA-Seq.transcriptome.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.transcriptome.gdc_realn.bam 9017298404 BAM transcriptome harmonized CPTAC3 fdf524a7-a6d7-49fc-8955-d84b5994ebea 03893b7c3f3ead55dc9d6e024affab72 {"aliquot_tag": "ALQ_45bd7700", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.transcriptome.gdc_realn.bam 10896942595 BAM transcriptome harmonized CPTAC3 496faa9f-9fe0-4da8-b71f-884a0ad9955b 9eee2c58b6522bd0aef98037c6fb85e4 {"aliquot_tag": "ALQ_1de2e5e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.WGS.A C3N-00194 CCRCC WGS tissue_normal CPT0014130009 CPT0014130009.WholeGenome.RP-1303.bam 60741633084 BAM submitted_aligned CPTAC3 47d90595-b4f4-421e-bf93-df9aa1287a20 fe8fd7ee37a830093ef7575ab7b3a317 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.WGS.A.hg38 C3N-00194 CCRCC WGS tissue_normal CPT0014130009 4b1e18e0-4afc-4ab8-92e8-c14e710b852a_wgs_gdc_realn.bam 90297600289 BAM harmonized CPTAC3 39d28b43-8993-4a09-a4d9-ad182f16afdf b16cfff965715ef32424efb8e64c2968 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.WGS.N C3N-00194 CCRCC WGS blood_normal CPT0015040002 CPT0015040002.WholeGenome.RP-1303.bam 78374449069 BAM submitted_aligned CPTAC3 36a51486-d088-4acf-8c7d-5bed3b5cb84d 8d90df249ab22b6e08fd42664dda4334 {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00194.WGS.N.hg38 C3N-00194 CCRCC WGS blood_normal CPT0015040002 e56a3c11-9494-43fb-899a-fddd5544db14_gdc_realn.bam 113712141377 BAM harmonized CPTAC3 92174e13-6b42-4e96-9989-3a6681e5b71b 73146f4c662c017edca76f936f9538e5 {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00194.WGS.T C3N-00194 CCRCC WGS tumor CPT0014160006 CPT0014160006.WholeGenome.RP-1303.bam 73870342333 BAM submitted_aligned CPTAC3 d0b094fd-0245-41eb-8f62-8a2f36cfd201 72c54a3a8472a2b6245f5b0d95218dc1 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.WGS.T.hg38 C3N-00194 CCRCC WGS tumor CPT0014160006 0b810b2c-1913-41fb-9c18-531ad23c35a2_gdc_realn.bam 106083377854 BAM harmonized CPTAC3 bdd054bd-3d73-4896-a97d-48f82b80bbed ad8fc5aab427f3e2a33e17a03a65e2e1 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.WXS.A C3N-00194 CCRCC WXS tissue_normal CPT0014130009 CPT0014130009.WholeExome.RP-1303.bam 25947593511 BAM submitted_aligned CPTAC3 77804049-3b4b-4a63-ada3-b30c4639f264 ac9d9201fba694ca8aac3978c24f5689 {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.WXS.A.hg38 C3N-00194 CCRCC WXS tissue_normal CPT0014130009 4b1e18e0-4afc-4ab8-92e8-c14e710b852a_wxs_gdc_realn.bam 35664853902 BAM harmonized CPTAC3 b4850227-4aa2-4aee-ae06-8d61736f3ea4 b4051eb9c4fa8ece6351a296cf82ce3a {"aliquot_tag": "ALQ_d5026a91", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00194.WXS.N C3N-00194 CCRCC WXS blood_normal CPT0015040002 CPT0015040002.WholeExome.RP-1303.bam 25982691380 BAM submitted_aligned CPTAC3 dd089558-db98-40c3-86c1-6181c0a015ca 7ad3c3a16eac94a52432fd899344af9a {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00194.WXS.N.hg38 C3N-00194 CCRCC WXS blood_normal CPT0015040002 e56a3c11-9494-43fb-899a-fddd5544db14_gdc_realn.bam 35659231947 BAM harmonized CPTAC3 f9ca8cbc-f618-4729-8a2d-0b30eb713436 d11bba2b4a2df74966a6f436e42f14d0 {"aliquot_tag": "ALQ_9ddbb718", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00194.WXS.T C3N-00194 CCRCC WXS tumor CPT0014160006 CPT0014160006.WholeExome.RP-1303.bam 25034772769 BAM submitted_aligned CPTAC3 fa6969fb-a6af-473d-adc6-86259e882103 077556f5a535a1153857d3aeedd723fe {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00194.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014160006 0b810b2c-1913-41fb-9c18-531ad23c35a2_gdc_realn.bam 33894653231 BAM harmonized CPTAC3 1062aea7-f6db-438c-88bb-1c8ccbaf7066 26b5815d77a0171e81439038174f8da9 {"aliquot_tag": "ALQ_8d5df870", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.ADD_3cc178b5.MethArray.Green.T C3N-00198 PDA Methylation_Array tumor CPT0014040006 202184990066_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cd8be8ec-1e0b-446b-97f9-74c58f74b580 7e39b437a5f9e36013941655dc332aae {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.ADD_3cc178b5.MethArray.Red.T C3N-00198 PDA Methylation_Array tumor CPT0014040006 202184990066_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 f291da5d-56c4-4215-a72a-fa85d1315263 fb9ec17625e02a9115884fe1b5fb4bda {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.ADD_3cc178b5.WGS.T C3N-00198 PDA WGS tumor CPT0014040006 CPT0014040006.WholeGenome.RP-1303.bam 73503825918 BAM submitted_aligned CPTAC3 31c9bf87-9618-4416-bc5d-523340f89e18 44edd90bf7902b0c886189ff22479dac {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.ADD_3cc178b5.WGS.T.hg38 C3N-00198 PDA WGS tumor CPT0014040006 83e23890-6d72-46bb-bfb2-2b37bca0908a_gdc_realn.bam 108570948517 BAM harmonized CPTAC3 bed18881-eb35-444a-8337-54b38f1308f7 8dc023fc8d925d001b195ea4020f3c19 {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.ADD_3cc178b5.WXS.T C3N-00198 PDA WXS tumor CPT0014040006 CPT0014040006.WholeExome.RP-1303.bam 29888712685 BAM submitted_aligned CPTAC3 685ce81f-0926-4cb9-b965-ebf47273a65e 5000658d6690d414bc6b6baf4bcc89f5 {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.ADD_3cc178b5.WXS.T.hg38 C3N-00198 PDA WXS tumor CPT0014040006 83e23890-6d72-46bb-bfb2-2b37bca0908a_gdc_realn.bam 41268545847 BAM harmonized CPTAC3 8a180028-4d0e-4ace-8fdf-46d354cd1148 495e59802eeabc86c2289ef5c3f0cd9a {"aliquot_tag": "ADD_3cc178b5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.miRNA-Seq.S45_L003_R1.T C3N-00198 PDA miRNA-Seq tumor CPT0014040009 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L003_R1_001.unaln.bam 280177556 BAM S45_L003_R1 submitted_unaligned CPTAC3 fbe5b2e3-d209-4141-aa37-5475d8221eb1 40d6239697209fae500b5e12f18ee21c {"aliquot_tag": "ALQ_ac7e6524", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.miRNA-Seq.T.hg38 C3N-00198 PDA miRNA-Seq tumor CPT0014040009 5b4078bd-967e-4815-a12b-63c52731ac79_mirnaseq_gdc_realn.bam 306024194 BAM harmonized CPTAC3 84845c5b-6901-488a-a67f-1d260a6506ca 5e60aa8a7aaea487c82f5f5ee34d8564 {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.RNA-Seq.chimeric.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.chimeric.gdc_realn.bam 38894982 BAM chimeric harmonized CPTAC3 3383b839-62e9-4605-a218-e7e91bd27b84 1d1e403502ba39a7a8752484e2bb6aae {"aliquot_tag": "ALQ_d6be3644", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00198.RNA-Seq.chimeric.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.chimeric.gdc_realn.bam 116852002 BAM chimeric harmonized CPTAC3 a97a08f8-6aac-44ff-a199-053278d61aeb 9862691f8c4c6cf89677c9e65f375cf9 {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.RNA-Seq.genomic.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.genomic.gdc_realn.bam 10759922678 BAM genomic harmonized CPTAC3 448ebc6f-984f-4676-a4fe-7590b932a4ab 11748f12119279bc90cc3c37a71d37e5 {"aliquot_tag": "ALQ_d6be3644", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00198.RNA-Seq.genomic.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.genomic.gdc_realn.bam 8923926457 BAM genomic harmonized CPTAC3 17d2de80-f7a2-4eb6-8106-b55cb11d8dae eb9a57cab00e7f8d53c95ff360883ffe {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.RNA-Seq.S17_L007_R1.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 4070882648 FASTQ S17_L007_R1 submitted_unaligned CPTAC3 9521ce65-a4f8-4dd2-8405-25181cab3d40 21fac064778862138f3ded6ee1e426fd {"aliquot_tag": "ALQ_ac7e6524", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.RNA-Seq.S17_L007_R2.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 4421631940 FASTQ S17_L007_R2 submitted_unaligned CPTAC3 6bb2e112-a57e-4ba1-bb77-bec322b1c6c5 6dfbaca9ed2a53f37e2ce40c2771afd7 {"aliquot_tag": "ALQ_ac7e6524", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.RNA-Seq.S29_L008_R1.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R1_001.fastq.gz 4316890587 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 38c25f0d-fa3f-4f7d-816c-f6cb65bff37b e7c1fbde50c6d4a550c2f65b92f8d462 {"aliquot_tag": "ALQ_d6be3644", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00198.RNA-Seq.S29_L008_R2.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R2_001.fastq.gz 4735227665 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 c9d12862-a12d-41fc-b8bb-b6aba3457c35 84ceb3250947ca466b885ce81988eb4d {"aliquot_tag": "ALQ_d6be3644", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00198.RNA-Seq.transcriptome.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.transcriptome.gdc_realn.bam 10598334840 BAM transcriptome harmonized CPTAC3 440018d4-0aa9-40bb-9fc9-d013b6ca17da dfe0186876a457cdb9e847168f911669 {"aliquot_tag": "ALQ_d6be3644", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00198.RNA-Seq.transcriptome.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.transcriptome.gdc_realn.bam 10490493547 BAM transcriptome harmonized CPTAC3 b15c3d50-e189-40be-b2af-edf983fe9ee0 488e8fb2a6b191e9cd9ae944d075480c {"aliquot_tag": "ALQ_ac7e6524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.Targeted.T C3N-00198 PDA Targeted_Sequencing tumor CPT0014040006_1 CPT0014040006_1.CustomSelection.RP-1303.PDO-18786.bam 3574211891 BAM submitted_aligned CPTAC3 074fd44b-5177-40fd-b5b1-93503afa6b7d 9eb80c2c462820d75d639017af0b1499 {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.Targeted.T.hg38 C3N-00198 PDA Targeted_Sequencing tumor CPT0014040006_1 ceb2062d-2258-49a6-91b3-723567d508b6_targetedsequencing_gdc_realn.bam 5285774542 BAM harmonized CPTAC3 0d734bef-2cc3-41b8-a5fc-71538a1eabb6 8f6ead86c5db879a26ea5b874b4f1de4 {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.WGS.N C3N-00198 PDA WGS blood_normal CPT0015030002 CPT0015030002.WholeGenome.RP-1303.bam 77690530641 BAM submitted_aligned CPTAC3 c03ce8f6-c95f-44de-88e3-013463cc2093 4c4e98e4067bb39b5e53215fdb11c8d9 {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00198.WGS.N.hg38 C3N-00198 PDA WGS blood_normal CPT0015030002 f4972f37-8e93-4689-b66e-f5dc681dc441_gdc_realn.bam 116213675033 BAM harmonized CPTAC3 48fa18a8-fcbd-4327-bc8c-fe5b78739810 65bb4e8d6bb85620ee73f02fd4dff3a9 {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00198.WXS.N C3N-00198 PDA WXS blood_normal CPT0015030002 CPT0015030002.WholeExome.RP-1303.bam 32136308667 BAM submitted_aligned CPTAC3 5c7f1576-b0b2-4d49-8f83-ba8d97a39df5 480b052e5175d5f5cf37bf7369e74f5e {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00198.WXS.N.hg38 C3N-00198 PDA WXS blood_normal CPT0015030002 f4972f37-8e93-4689-b66e-f5dc681dc441_gdc_realn.bam 43813830812 BAM harmonized CPTAC3 f52843cd-1e14-4700-9730-0e9a089211ce 2685891a454c96e095ddf593ee3c88d2 {"aliquot_tag": "ALQ_2ffb6b08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00198.WXS.T C3N-00198 PDA WXS tumor CPT0014040006_1 CPT0014040006_1.WholeExome.RP-1303.bam 51297996778 BAM submitted_aligned CPTAC3 be68f052-e665-4ef7-8dc8-f32d6491fa9a 1210e36d731b7c7ceb99b1ca37a8162e {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00198.WXS.T.hg38 C3N-00198 PDA WXS tumor CPT0014040006_1 ceb2062d-2258-49a6-91b3-723567d508b6_wxs_gdc_realn.bam 70339229416 BAM harmonized CPTAC3 623063b2-3df5-40e3-a25f-8acd1bc25d5e 8aa3a6a8209be11c497b6a02269506ad {"aliquot_tag": "ALQ_ea48cc6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.MethArray.Green.A C3N-00199 LUAD Methylation_Array tissue_normal CPT0014290009 203027390081_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1b6aea35-4b7b-4b20-9e5c-6c9209e27564 bf15f2f1f0627a2a4b3dc6e9b67f2c65 {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.MethArray.Green.T C3N-00199 LUAD Methylation_Array tumor CPT0014260006 202184900105_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f602b1d1-7193-4817-b1ec-709eab5ab140 cdf2b0e2f7dc423d5ece25e7f6c247dd {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.MethArray.Red.A C3N-00199 LUAD Methylation_Array tissue_normal CPT0014290009 203027390081_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 59edd2ae-d26c-43d4-93a9-97981aee7fe7 ee5559ab2a45adde19bec546019a4401 {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.MethArray.Red.T C3N-00199 LUAD Methylation_Array tumor CPT0014260006 202184900105_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 04cf04a5-247c-470a-875d-a182fb561c80 d3c41039a6c87585a79be80e8fcb9095 {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.miRNA-Seq.A.hg38 C3N-00199 LUAD miRNA-Seq tissue_normal CPT0014290006 15ae0c72-8a86-4890-b52c-fdda4f0155ee_mirnaseq_gdc_realn.bam 274412882 BAM harmonized CPTAC3 289b2f50-d0e2-4314-b22e-878b438bba90 436b1d566feb5d2c79664e356323cd24 {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.miRNA-Seq.S30_L008_R1.A C3N-00199 LUAD miRNA-Seq tissue_normal CPT0014290006 181108_UNC31-K00269_0162_AH255GBBXY_GCCAAT_S30_L008_R1_001.unaln.bam 248314312 BAM S30_L008_R1 submitted_unaligned CPTAC3 b81f49dd-2804-4154-a1bf-d5d13b59b0d6 8a4fea55896f647efb6a63856b58a689 {"aliquot_tag": "ALQ_89991d0f", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.miRNA-Seq.S46_L003_R1.T C3N-00199 LUAD miRNA-Seq tumor CPT0014260009 181012_UNC32-K00270_0124_AH223CBBXY_ATGAGC_S46_L003_R1_001.unaln.bam 190084361 BAM S46_L003_R1 submitted_unaligned CPTAC3 49a32859-64cd-464a-9c7a-3ce7c3f98e6c da0b91c5964fd4f9e2fc73f95ac2c452 {"aliquot_tag": "ALQ_9b76974f", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.miRNA-Seq.T.hg38 C3N-00199 LUAD miRNA-Seq tumor CPT0014260009 94f04539-d4d9-4d12-ab64-de6382b959ee_mirnaseq_gdc_realn.bam 205537349 BAM harmonized CPTAC3 dbd079ea-0916-4694-b323-25a3c8afb335 cc3abc20aa1a436e95e3bdc6627b1132 {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.RNA-Seq.chimeric.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.chimeric.gdc_realn.bam 123431101 BAM chimeric harmonized CPTAC3 542f15f4-db6e-4eb0-bfa7-cf8317c5c9c4 96124b884f8063dc8388e167590e99ad {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.RNA-Seq.chimeric.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.chimeric.gdc_realn.bam 145538000 BAM chimeric harmonized CPTAC3 c3bd90d1-3611-4612-8519-e2e3a3df2efd 3260896dcbe1428013cb62a527ea33ba {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.RNA-Seq.genomic.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.genomic.gdc_realn.bam 7142423942 BAM genomic harmonized CPTAC3 6a882b43-1e18-4b68-834e-900b2512f0e5 18790d5c84abbaed7d4910ff289e096e {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.RNA-Seq.genomic.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.genomic.gdc_realn.bam 7765550740 BAM genomic harmonized CPTAC3 0a604ffc-daad-4018-a7af-b2ffa878a865 91489c8222569c13f38d38fd0fc0af92 {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.RNA-Seq.S19_L007_R1.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R1_001.fastq.gz 3822441410 FASTQ S19_L007_R1 submitted_unaligned CPTAC3 0f457298-17f9-479a-b9f8-94752080825d 7354b54c4165b9c66ef64ffce2e1bb3a {"aliquot_tag": "ALQ_9b76974f", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.RNA-Seq.S19_L007_R2.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R2_001.fastq.gz 4133802684 FASTQ S19_L007_R2 submitted_unaligned CPTAC3 95de9af0-fc5c-47a7-91d4-5a10565af45e 881f90ff41aeb53298aa408f48b11d5c {"aliquot_tag": "ALQ_9b76974f", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.RNA-Seq.S7_L002_R1.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R1_001.fastq.gz 3337555304 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 cc616a5c-2e83-4128-a777-a4b64d98b8a5 33e3b6b28d4a4af0e7efc7161b5454da {"aliquot_tag": "ALQ_89991d0f", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.RNA-Seq.S7_L002_R2.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R2_001.fastq.gz 3632090303 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 5c4657a3-2bbb-41c4-a849-c35f88650bef 9ad488f920b68c63f15df210a652a0a1 {"aliquot_tag": "ALQ_89991d0f", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.RNA-Seq.transcriptome.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.transcriptome.gdc_realn.bam 8086611731 BAM transcriptome harmonized CPTAC3 77f0ca33-cbff-4630-b09e-d6f64d34bca1 3404aade9530d31fd5b11381f6b0f780 {"aliquot_tag": "ALQ_89991d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.RNA-Seq.transcriptome.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.transcriptome.gdc_realn.bam 9366138674 BAM transcriptome harmonized CPTAC3 a8b1ce52-c568-4b1c-95d2-032188eb343e a7241a238fdd434ae900d7d85d11d61a {"aliquot_tag": "ALQ_9b76974f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.WGS.A C3N-00199 LUAD WGS tissue_normal CPT0014290009 CPT0014290009.WholeGenome.RP-1303.bam 50489454596 BAM submitted_aligned CPTAC3 5307414c-87a4-4e14-8ad1-34f0c5987fb7 41199e0de8475c30bcadb08d7ca6402e {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.WGS.A.hg38 C3N-00199 LUAD WGS tissue_normal CPT0014290009 42718e3a-c8ab-4f1c-9bdc-2fc86783ba47_wgs_gdc_realn.bam 75047081131 BAM harmonized CPTAC3 db7fe088-256c-49f8-80b4-262b3cae74bc 67f61ec4e4999e976df29715deb3613c {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.WGS.N C3N-00199 LUAD WGS blood_normal CPT0015050002 CPT0015050002.WholeGenome.RP-1303.bam 76109597832 BAM submitted_aligned CPTAC3 0a56750f-fc6c-4540-b05a-8e560084f41d 956ff059b601d5caded3a67204c76c50 {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00199.WGS.N.hg38 C3N-00199 LUAD WGS blood_normal CPT0015050002 42bb41e3-aee2-4728-8bb6-2b80fd76c3fd_gdc_realn.bam 114208957587 BAM harmonized CPTAC3 4e6b7526-bb78-4db7-998e-1d9665df32b7 728361ad5d5cab0620eba7e1d6f81ddc {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00199.WGS.T C3N-00199 LUAD WGS tumor CPT0014260006 CPT0014260006.WholeGenome.RP-1303.bam 79976696823 BAM submitted_aligned CPTAC3 64ebdacf-9b42-4f20-a628-5b5e1ffb73b5 ffae43b0227f8a46b63591e1cbf6d9b3 {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.WGS.T.hg38 C3N-00199 LUAD WGS tumor CPT0014260006 a807633b-a292-40f9-870b-b6b9bffeac1f_gdc_realn.bam 118731499784 BAM harmonized CPTAC3 ef7aaeca-ced6-4428-912c-aa6e7d96a436 ab7f984d8c6c912cd948b7ee43e4fade {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.WXS.A C3N-00199 LUAD WXS tissue_normal CPT0014290009 CPT0014290009.WholeExome.RP-1303.bam 36172503206 BAM submitted_aligned CPTAC3 2786d45a-6ff0-4fef-8173-f4c76abdecf6 1a868e099fef4e127ccaf0d3701e96ae {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.WXS.A.hg38 C3N-00199 LUAD WXS tissue_normal CPT0014290009 42718e3a-c8ab-4f1c-9bdc-2fc86783ba47_wxs_gdc_realn.bam 48899594876 BAM harmonized CPTAC3 52a220bd-1caa-44d7-8d67-107eddcb8122 3d3f97cf7585c9a2450a4220c4dd2025 {"aliquot_tag": "ALQ_1926009e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00199.WXS.N C3N-00199 LUAD WXS blood_normal CPT0015050002 CPT0015050002.WholeExome.RP-1303.bam 33875019522 BAM submitted_aligned CPTAC3 e303e911-a9a0-4c05-be59-9a97a21eda96 142726e43f57db19a95da62f32f56343 {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00199.WXS.N.hg38 C3N-00199 LUAD WXS blood_normal CPT0015050002 42bb41e3-aee2-4728-8bb6-2b80fd76c3fd_gdc_realn.bam 46780269090 BAM harmonized CPTAC3 c646d21a-7317-46e8-afb0-46e08229ab0c 66cbdc48abe0dbe121a3234b9d916880 {"aliquot_tag": "ALQ_a0bb9ea8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00199.WXS.T C3N-00199 LUAD WXS tumor CPT0014260006 CPT0014260006.WholeExome.RP-1303.bam 24076741998 BAM submitted_aligned CPTAC3 e1c10352-ee7c-4e0f-982b-44a165ff3637 80d5fe6cf23d744fecb7ddc94db4a0dc {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00199.WXS.T.hg38 C3N-00199 LUAD WXS tumor CPT0014260006 a807633b-a292-40f9-870b-b6b9bffeac1f_gdc_realn.bam 33675105402 BAM harmonized CPTAC3 39c04fe6-5a29-46eb-9a1c-f1f5bb9b0cd8 d489b92cced7306d3820bf0fc7eea265 {"aliquot_tag": "ALQ_bc98ade", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.MethArray.Green.T C3N-00200 UCEC Methylation_Array tumor CPT0017870006 202178770143_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5a1c036a-e34b-48d8-95bf-d9ce2e646465 bb35c8aad5c4f8f26927eb3cff870a0a {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.MethArray.Red.T C3N-00200 UCEC Methylation_Array tumor CPT0017870006 202178770143_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 e2f76d0b-963a-4294-adb5-24a57f33fa14 6ea568dc6f05eea1b3f05a8cb756a472 {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.miRNA-Seq.S28_L002_R1.T C3N-00200 UCEC miRNA-Seq tumor CPT0017870009 180924_UNC31-K00269_0154_AHWTMLBBXX_TATAAT_S28_L002_R1_001.unaln.bam 242354930 BAM S28_L002_R1 submitted_unaligned CPTAC3 a47fc920-a2e5-47e8-84d8-7f58e8086487 7ca95cb7206ba4cfd2a5ba455bbf9821 {"aliquot_tag": "ALQ_36658704", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.miRNA-Seq.T.hg38 C3N-00200 UCEC miRNA-Seq tumor CPT0017870009 46a31ff9-04a0-4881-9f74-18f06776913d_mirnaseq_gdc_realn.bam 263298594 BAM harmonized CPTAC3 59fbf5d9-667d-4e3a-8756-1ca458d02116 724139f734f8637a2684723439706028 {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.chimeric.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.chimeric.gdc_realn.bam 50950510 BAM chimeric harmonized CPTAC3 56a860f4-b4d7-4454-8261-513dafd9f9d8 0110bdbeabd796bf23249de813ce64eb {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.chimeric.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.chimeric.gdc_realn.bam 11431766 BAM chimeric harmonized CPTAC3 eece3823-d68a-4802-b4ef-451232341025 b9dfe9f3efe10d34afc0f5fde25d70f1 {"aliquot_tag": "ALQ_9d9543d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.genomic.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.genomic.gdc_realn.bam 6443811564 BAM genomic harmonized CPTAC3 c08ee352-f3ff-4acd-9613-75fd7d5baf53 96dff878170785682b06d7b719856608 {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.genomic.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.genomic.gdc_realn.bam 9434567626 BAM genomic harmonized CPTAC3 cd132700-dd5c-46fa-ae97-eb9424ff40fb 10f0a6816e3a0d2aa3617069d696cf5a {"aliquot_tag": "ALQ_9d9543d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.S22_L006_R1.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 2821816577 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 c9c50554-d2cc-4a32-a115-38a396a175f3 8c902be149cf3131991ae808e84ff5d8 {"aliquot_tag": "ALQ_36658704", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.S22_L006_R2.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3002112939 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 95fff05f-06dc-4463-a6b9-9cb88669fe24 6986967a2bd48bb8cd586d29bd4279e6 {"aliquot_tag": "ALQ_36658704", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.S41_R1.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R1_001.fastq.gz 4365257216 FASTQ S41_R1 submitted_unaligned CPTAC3 87c4c700-700c-4400-8d8a-579d4e3995d4 a323cbfa19293b18dc7e15c31eb529bd {"aliquot_tag": "ALQ_9d9543d3", "sample": "S41", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.S41_R2.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R2_001.fastq.gz 5194079741 FASTQ S41_R2 submitted_unaligned CPTAC3 67cbdb24-9159-4425-a6b8-8ce5399bdb39 7c75230aea59de287e09029084b62098 {"aliquot_tag": "ALQ_9d9543d3", "sample": "S41", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.transcriptome.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.transcriptome.gdc_realn.bam 6076626421 BAM transcriptome harmonized CPTAC3 95dd4f76-241e-418c-af88-a41b50917ab2 5b179cc78cac65b3cb6b52224c9a889f {"aliquot_tag": "ALQ_36658704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.RNA-Seq.transcriptome.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.transcriptome.gdc_realn.bam 8827213474 BAM transcriptome harmonized CPTAC3 0166e58b-baad-46c2-b7ca-cd39d74b20bd 1b21e19ae7a451f506f2b50aebd82bb6 {"aliquot_tag": "ALQ_9d9543d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.WGS.N C3N-00200 UCEC WGS blood_normal CPT0028400002 CPT0028400002.WholeGenome.RP-1303.bam 61727176584 BAM submitted_aligned CPTAC3 d8d64456-49ee-432f-9890-5b9d82c2f062 40e64c48e88614494410b56ab3da9891 {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00200.WGS.N.hg38 C3N-00200 UCEC WGS blood_normal CPT0028400002 136eb1b9-e1da-4a4d-9637-708e3553ba64_gdc_realn.bam 88313003884 BAM harmonized CPTAC3 636910f0-d39e-4463-abd3-f7dafbbf34fc b21f0bfc42be3843424fe1d5775a5c7e {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00200.WGS.T C3N-00200 UCEC WGS tumor CPT0017870006 CPT0017870006.WholeGenome.RP-1303.bam 64393427552 BAM submitted_aligned CPTAC3 5722cf1e-90f7-470a-8697-306e855a9b22 45f2eabc37f65cd47e917455834580c3 {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.WGS.T.hg38 C3N-00200 UCEC WGS tumor CPT0017870006 7c591788-4359-4ae7-8dc2-6342e4726baa_gdc_realn.bam 92873737605 BAM harmonized CPTAC3 f5332af5-667a-4788-b6c5-0a2690c79255 c6e11c807ede3f4b4dd91c2c79618bdf {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.WXS.N C3N-00200 UCEC WXS blood_normal CPT0028400002 CPT0028400002.WholeExome.RP-1303.bam 49539788474 BAM submitted_aligned CPTAC3 b44d5974-852f-4a89-9412-9c321bf1d1a9 2f864915614ebb298945d978bd5bf33c {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00200.WXS.N.hg38 C3N-00200 UCEC WXS blood_normal CPT0028400002 136eb1b9-e1da-4a4d-9637-708e3553ba64_gdc_realn.bam 66282520018 BAM harmonized CPTAC3 1d2a42cf-e43c-4ded-8a10-c1c0cc85791a bb1c34ad3637e4975c5eac12417e729d {"aliquot_tag": "ALQ_1c9235ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00200.WXS.T C3N-00200 UCEC WXS tumor CPT0017870006 CPT0017870006.WholeExome.RP-1303.bam 26158709806 BAM submitted_aligned CPTAC3 84bbba11-564e-4318-9958-7e1f5f976431 39fbed68f2a3c80c1be09e710750543c {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00200.WXS.T.hg38 C3N-00200 UCEC WXS tumor CPT0017870006 7c591788-4359-4ae7-8dc2-6342e4726baa_gdc_realn.bam 35892562926 BAM harmonized CPTAC3 78de42e6-acc0-49ab-8879-7af689f912b0 7186cee7c275445991b5674597aca3bf {"aliquot_tag": "ALQ_a6da9a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.MethArray.Green.A C3N-00203 LUAD Methylation_Array tissue_normal CPT0090370009 203028200104_R07C01_Grn.idat 13676238 IDAT Green NA CPTAC3 1660d5d2-2cdc-4915-b8ea-5e0d135aaf97 064872b7b050f76ad749a68f61f37313 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.MethArray.Green.T C3N-00203 LUAD Methylation_Array tumor CPT0090340009 202234360025_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b87a48be-bb58-48a5-92cc-554dc10893d0 7abf0ae83af26ec45f552f0e55f6461c {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.MethArray.Red.A C3N-00203 LUAD Methylation_Array tissue_normal CPT0090370009 203028200104_R07C01_Red.idat 13676238 IDAT Red NA CPTAC3 f72f6b3d-1a97-4f37-b8a6-48d1744714bb 711c962cb09d34dcab559d956ea935a6 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.MethArray.Red.T C3N-00203 LUAD Methylation_Array tumor CPT0090340009 202234360025_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 1ebcd0bc-acbd-424d-a146-c10600463091 581631286540647a5d26d5785db447f6 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.miRNA-Seq.A.hg38 C3N-00203 LUAD miRNA-Seq tissue_normal CPT0090370006 6280e220-8539-425e-854c-df61786e84af_mirnaseq_gdc_realn.bam 304133614 BAM harmonized CPTAC3 7c087eb4-ce9f-44d8-b61c-38b451ef2f16 2b734044eccfef2361335eb96c40d829 {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.miRNA-Seq.S32_L003_R1.T C3N-00203 LUAD miRNA-Seq tumor CPT0090340006 181119_UNC31-K00269_0165_AH27WCBBXY_ACTTGA_S32_L003_R1_001.unaln.bam 169748950 BAM S32_L003_R1 submitted_unaligned CPTAC3 e2affc4c-42fb-44a7-baee-76d8b6fb3359 f46f75b05651c0b24ca014953f11b8c2 {"aliquot_tag": "ALQ_9dff35bd", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.miRNA-Seq.S34_L005_R1.A C3N-00203 LUAD miRNA-Seq tissue_normal CPT0090370006 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L005_R1_001.unaln.bam 279444687 BAM S34_L005_R1 submitted_unaligned CPTAC3 a18b465a-65d6-405f-bf81-a8c4ed379e1a 5230744eb132b396f446364a7910f052 {"aliquot_tag": "ALQ_da5f4f6d", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.miRNA-Seq.T.hg38 C3N-00203 LUAD miRNA-Seq tumor CPT0090340006 79eb5963-f996-4fea-b505-ff6e450a716f_mirnaseq_gdc_realn.bam 188536669 BAM harmonized CPTAC3 31e9e7a8-61cb-43ff-8586-df480658fa1f d80c082b017832c23586d9d700735ece {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.RNA-Seq.chimeric.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.chimeric.gdc_realn.bam 149019983 BAM chimeric harmonized CPTAC3 62f1ddea-e801-4ab6-b8ae-65b3ef959db0 203b09f2fd9b62c7f51fc61768bf16e8 {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.RNA-Seq.chimeric.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.chimeric.gdc_realn.bam 65764281 BAM chimeric harmonized CPTAC3 4e68de80-869c-40a9-a037-f10533abe5b5 4ab1180ebd865b0a7d0e047802d9d5e4 {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.RNA-Seq.genomic.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.genomic.gdc_realn.bam 9224378228 BAM genomic harmonized CPTAC3 0dcd3218-6d65-443a-a060-124180860c79 13fa1f417573871a5c3e6c9b61fcb6bc {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.RNA-Seq.genomic.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.genomic.gdc_realn.bam 9846270862 BAM genomic harmonized CPTAC3 c183df4f-d1a2-42ab-bc1e-2fb4079ef4d6 d92612b5c113826b1de84dffbaceaf32 {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.RNA-Seq.S3_L008_R1.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 4007939340 FASTQ S3_L008_R1 submitted_unaligned CPTAC3 b0e1dba1-1694-48ef-90a3-e1424dcc9368 e8c9cd3be97efe38827d01c2fe19f96a {"aliquot_tag": "ALQ_9dff35bd", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.RNA-Seq.S3_L008_R2.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4515898489 FASTQ S3_L008_R2 submitted_unaligned CPTAC3 b5248075-acbe-4b4b-b323-beec3158afbd 45ab8f13519f7eafe7399957038a49fe {"aliquot_tag": "ALQ_9dff35bd", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.RNA-Seq.S4_L006_R1.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R1_001.fastq.gz 4304345078 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 fec6fc9a-ee8c-4749-8aa6-d7078dc761c9 61a5ea67939b8ef7bcace8d3a0816207 {"aliquot_tag": "ALQ_da5f4f6d", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.RNA-Seq.S4_L006_R2.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R2_001.fastq.gz 4747925678 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 d25781de-729a-4f02-81ec-04a384c09768 004e8b7611cb903aaac53aa307a2f332 {"aliquot_tag": "ALQ_da5f4f6d", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.RNA-Seq.transcriptome.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.transcriptome.gdc_realn.bam 11389908265 BAM transcriptome harmonized CPTAC3 ef6f0cb7-6617-44ab-aabc-e725f601d010 d36b41557247f2587c9a1724011a7c58 {"aliquot_tag": "ALQ_da5f4f6d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.RNA-Seq.transcriptome.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.transcriptome.gdc_realn.bam 10982533627 BAM transcriptome harmonized CPTAC3 7dfb2e3f-d2d3-4045-b11f-5984d2b6dccd cd67e9b3014a2ca34bb767268107efe9 {"aliquot_tag": "ALQ_9dff35bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.WGS.A C3N-00203 LUAD WGS tissue_normal CPT0090370009 CPT0090370009.WholeGenome.RP-1303.bam 52227247941 BAM submitted_aligned CPTAC3 3e868879-73a1-45b8-91c5-dd58b028528e a09897cd539e8667391ddd5fff46b393 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.WGS.A.hg38 C3N-00203 LUAD WGS tissue_normal CPT0090370009 6abce0dc-8025-44d7-b9d3-de1485bdff1a_wgs_gdc_realn.bam 75735181774 BAM harmonized CPTAC3 f82b6841-51cd-4bc5-aeb4-d3fd9fafa6cf d2508c92a3b9f4e0447ec7c9e62fb9b0 {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.WGS.N C3N-00203 LUAD WGS blood_normal CPT0092480002 CPT0092480002.WholeGenome.RP-1303.bam 73761393060 BAM submitted_aligned CPTAC3 2d788109-d360-457e-83ac-277271c3ba22 8d431bb15d3a10a82d83b553fd8f4c68 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00203.WGS.N.hg38 C3N-00203 LUAD WGS blood_normal CPT0092480002 44dee853-c2c4-431f-95d1-cbf3732c0dcd_wgs_gdc_realn.bam 107048598050 BAM harmonized CPTAC3 28205519-c62c-4216-a6a9-c0be3ebf08d6 90a3e9b9601706787d786f9d9f9691d1 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00203.WGS.T C3N-00203 LUAD WGS tumor CPT0090340009 CPT0090340009.WholeGenome.RP-1303.bam 59075981888 BAM submitted_aligned CPTAC3 adf12926-154b-4431-a5aa-78120ac10fdb f8003309b561102103eafc8e977e1519 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.WGS.T.hg38 C3N-00203 LUAD WGS tumor CPT0090340009 506d087f-a4aa-433d-9ecf-a1d908ab50f8_wgs_gdc_realn.bam 86129127596 BAM harmonized CPTAC3 8256f05b-b59c-452b-984d-20cfb560be40 515ce258ff225517cf3698072968f65d {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.WXS.A C3N-00203 LUAD WXS tissue_normal CPT0090370009 CPT0090370009.WholeExome.RP-1303.bam 27894843772 BAM submitted_aligned CPTAC3 08bf3e5a-0627-4bef-951d-c8dd2ea678aa 67b551f8abbbb02800cf8dad635ca31d {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.WXS.A.hg38 C3N-00203 LUAD WXS tissue_normal CPT0090370009 6abce0dc-8025-44d7-b9d3-de1485bdff1a_wxs_gdc_realn.bam 38190691759 BAM harmonized CPTAC3 fc410ff5-c375-4af3-8069-162cbf2fee40 23c9855c02b2ab3cfc2b3b434524509c {"aliquot_tag": "ALQ_4ae052fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00203.WXS.N C3N-00203 LUAD WXS blood_normal CPT0092480002 CPT0092480002.WholeExome.RP-1303.bam 30695534368 BAM submitted_aligned CPTAC3 1df70528-ad3c-462b-8dc4-05e2780c5a99 11e92de24cda74d6eaa558159c619ba6 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00203.WXS.N.hg38 C3N-00203 LUAD WXS blood_normal CPT0092480002 44dee853-c2c4-431f-95d1-cbf3732c0dcd_wxs_gdc_realn.bam 40027821219 BAM harmonized CPTAC3 2fe6e909-0589-4171-8a94-d56ba8d405fd 9b900a75f0def56e1a1ed580cb444eb4 {"aliquot_tag": "ALQ_d5f83d34", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00203.WXS.T C3N-00203 LUAD WXS tumor CPT0090340009 CPT0090340009.WholeExome.RP-1303.bam 36812835755 BAM submitted_aligned CPTAC3 636bf99a-9def-4a45-b48b-c9768cf4f040 9ca9c614b226d344f1595e1eb046d287 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00203.WXS.T.hg38 C3N-00203 LUAD WXS tumor CPT0090340009 506d087f-a4aa-433d-9ecf-a1d908ab50f8_wxs_gdc_realn.bam 50716539875 BAM harmonized CPTAC3 fbd9d3c3-115a-4637-b326-a6e3e7c8dc51 c2a096eed8c33ba5ed66bd88d3fba313 {"aliquot_tag": "ALQ_d40282c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.MethArray.Green.T C3N-00204 HNSCC Methylation_Array tumor CPT0084630012 202234370093_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 283019c7-2d58-448e-90ce-9a6b5b93c169 e9c3c46e347bb50685a49d66ac7e138d {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.MethArray.Red.T C3N-00204 HNSCC Methylation_Array tumor CPT0084630012 202234370093_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 875e6b1b-a7f0-4b9d-bbdf-a6326e69ee2a fa49cb0e09afc26afd51891ca026f27e {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.miRNA-Seq.A.hg38 C3N-00204 HNSCC miRNA-Seq tissue_normal CPT0084650007 107f6b41-82ae-401f-9594-8eaf5d165bee_mirnaseq_gdc_realn.bam 201025216 BAM harmonized CPTAC3 6b5bcbb4-b5c6-4e4b-8784-760828191745 efbe8c167e59f033715db5e79ee444f3 {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00204.miRNA-Seq.S29_L008_R1.T C3N-00204 HNSCC miRNA-Seq tumor CPT0084630015 180724_UNC32-K00270_0106_BHWK3MBBXX_GCCAAT_S29_L008_R1_001.unaln.bam 281312599 BAM S29_L008_R1 submitted_unaligned CPTAC3 dc6a7c5e-5930-4e20-820b-b044d7f29089 b2a39de198ef1e6e55f8a0e8fa40fe99 {"aliquot_tag": "ALQ_c7e53c68", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.miRNA-Seq.S2_L001_R1.A C3N-00204 HNSCC miRNA-Seq tissue_normal CPT0084650007 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 178891074 BAM S2_L001_R1 submitted_unaligned CPTAC3 ebb676c1-fae3-40cb-9944-0c4519ae5dd9 317489c58609366a30c84d40160ca676 {"aliquot_tag": "ALQ_bfb099a5", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00204.miRNA-Seq.T.hg38 C3N-00204 HNSCC miRNA-Seq tumor CPT0084630015 2cd497e1-6505-47b8-8765-6cf8a7f4f381_mirnaseq_gdc_realn.bam 295915377 BAM harmonized CPTAC3 220b2e6a-21c8-43a4-8c95-b6283981ad77 cca33175d73f7f722a8c63fb30c88ea4 {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.chimeric.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.chimeric.gdc_realn.bam 28817736 BAM chimeric harmonized CPTAC3 ab0cb2af-9844-4419-be4b-917f9d34969b 9a5611fcb8111652bdf1ddae48b2aba5 {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00204.RNA-Seq.chimeric.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.chimeric.gdc_realn.bam 70796344 BAM chimeric harmonized CPTAC3 a2e53ae5-adb9-46ef-81d0-939cceadc000 66fead0b9c896a4d77c64bd0718d535e {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.chimeric.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.chimeric.gdc_realn.bam 300349521 BAM chimeric harmonized CPTAC3 3f583db0-7cb6-415e-af96-c7f7e18c8aac a70cfb844a9d54c2e76f4a5d7532df11 {"aliquot_tag": "ALQ_9f6103a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.genomic.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.genomic.gdc_realn.bam 9282512306 BAM genomic harmonized CPTAC3 bef77779-0017-4ea2-974f-cb6c6bffabc2 6523f51b02ef4d4e2c5757d3d98a80c3 {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00204.RNA-Seq.genomic.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.genomic.gdc_realn.bam 8561131904 BAM genomic harmonized CPTAC3 1dced3ca-9b4b-4839-ad6e-383c24adc9f1 405ced5bc7486c8c5ca791fdebaa1065 {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.genomic.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.genomic.gdc_realn.bam 14096458087 BAM genomic harmonized CPTAC3 fffa679c-a9ec-45b7-a890-5ba7484ecf4b c7d145f1542926ccc61f4e7d1864efa1 {"aliquot_tag": "ALQ_9f6103a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.S13_R1.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R1_001.fastq.gz 8669215519 FASTQ S13_R1 submitted_unaligned CPTAC3 02e4024a-9946-47df-8094-f39ff22aebf7 875fa6ac786bfc2bcf19c372e720ab16 {"aliquot_tag": "ALQ_9f6103a5", "sample": "S13", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.S13_R2.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R2_001.fastq.gz 9038794085 FASTQ S13_R2 submitted_unaligned CPTAC3 209cd6f7-c9bb-4399-9824-6f47b9ee5c47 1950b378452e3e7aa2c4fd41101be583 {"aliquot_tag": "ALQ_9f6103a5", "sample": "S13", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.S14_L004_R1.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4244512016 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 44754663-1cec-42d0-934e-77fd9b38652e a3c0bb2a06040268dbe4a79cd0cd9d81 {"aliquot_tag": "ALQ_c7e53c68", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.S14_L004_R2.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4692864567 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 41ab7edc-9e33-4ee6-8a40-66d4a1efef50 f901c98ee3f0fca300805837c19ac65a {"aliquot_tag": "ALQ_c7e53c68", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.S18_L005_R1.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4427440579 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 30f4e1e2-0403-4234-83ef-4f2ce782d7ad 8014d5217bffbe60e03ba0a0396b9658 {"aliquot_tag": "ALQ_bfb099a5", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00204.RNA-Seq.S18_L005_R2.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4782581265 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 764eb37d-6688-4031-a97b-1bd3336de057 e20c5763f3dd27ac83ae98573bdfcf10 {"aliquot_tag": "ALQ_bfb099a5", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00204.RNA-Seq.transcriptome.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.transcriptome.gdc_realn.bam 14027623473 BAM transcriptome harmonized CPTAC3 e06afed4-0c94-46be-96b3-da96f21f7efd 2c5be1e50d0975e4fb1012a28dc42f3a {"aliquot_tag": "ALQ_bfb099a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00204.RNA-Seq.transcriptome.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.transcriptome.gdc_realn.bam 11412747756 BAM transcriptome harmonized CPTAC3 644aca7c-f7f2-4559-a233-55514ed7b12c a5781b8713bdb62c3835a1b188cf213e {"aliquot_tag": "ALQ_c7e53c68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.RNA-Seq.transcriptome.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.transcriptome.gdc_realn.bam 7043952928 BAM transcriptome harmonized CPTAC3 26038071-3f06-462b-a5c3-3ff07f8e4e82 b8e6f5afe5716ce7e33ea9c3847094a9 {"aliquot_tag": "ALQ_9f6103a5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.WGS.N C3N-00204 HNSCC WGS blood_normal CPT0085320002 CPT0085320002.WholeGenome.RP-1303.bam 55897678774 BAM submitted_aligned CPTAC3 75f1ffcf-ac51-47e9-87e9-543a1949b0b9 8a2ed6903292699823b0b14a831bdc02 {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00204.WGS.N.hg38 C3N-00204 HNSCC WGS blood_normal CPT0085320002 c93de7f1-762b-4ca7-a1e4-8f959c170856_wgs_gdc_realn.bam 81401583726 BAM harmonized CPTAC3 e448c645-2d99-456b-8e3f-965f5d0b0d10 e03ad3b16f65406d0ca7340317147623 {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00204.WGS.T C3N-00204 HNSCC WGS tumor CPT0084630012 CPT0084630012.WholeGenome.RP-1303.bam 71308873899 BAM submitted_aligned CPTAC3 35f357ab-f059-4ed0-82db-61ca0dbae404 05333b427216cea9831806716ac9aba1 {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.WGS.T.hg38 C3N-00204 HNSCC WGS tumor CPT0084630012 5eab67d6-ad15-43ea-b7d4-265945e3ba09_wgs_gdc_realn.bam 104382998256 BAM harmonized CPTAC3 55f9d24b-032f-46ac-9cf7-f92c767a90c2 9f4410fa4eb26cd397c45c77dbc3b653 {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.WXS.N C3N-00204 HNSCC WXS blood_normal CPT0085320002 CPT0085320002.WholeExome.RP-1303.bam 25387758674 BAM submitted_aligned CPTAC3 d9781140-0b84-4891-9025-429cbaa8bd3e b75f17034e0a06b4c08944a2cd3de77c {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00204.WXS.N.hg38 C3N-00204 HNSCC WXS blood_normal CPT0085320002 c93de7f1-762b-4ca7-a1e4-8f959c170856_wxs_gdc_realn.bam 34063720268 BAM harmonized CPTAC3 ea384a65-ca41-4c64-b65a-16f62bbd9604 b0133868e644ac458c71194d5d007c45 {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00204.WXS.T C3N-00204 HNSCC WXS tumor CPT0084630012 CPT0084630012.WholeExome.RP-1303.bam 49922626049 BAM submitted_aligned CPTAC3 d9f42f05-a3ac-4b50-bf96-595185f860d3 102d50fa94dadac76d4b412f2304eaaa {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00204.WXS.T.hg38 C3N-00204 HNSCC WXS tumor CPT0084630012 5eab67d6-ad15-43ea-b7d4-265945e3ba09_wxs_gdc_realn.bam 69573604165 BAM harmonized CPTAC3 e5b8a4d8-f631-4852-afd2-8aa05e1a2267 4be77a335c7c413825efe3ec627984a0 {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.MethArray.Green.T C3N-00211 LSCC Methylation_Array tumor CPT0090440009 202234370119_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b53eacf1-5189-4388-ab8a-ee4fcf8bd8a3 c12f9c2783aa433deee582063063cb21 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.MethArray.Red.T C3N-00211 LSCC Methylation_Array tumor CPT0090440009 202234370119_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 82b90a99-b0ea-47a6-9988-86afa458c304 4188430680661b8603d5d04a18556a11 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.miRNA-Seq.S24_L002_R1.T C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTAGCT_S24_L002_R1_001.unaln.bam 734277190 BAM S24_L002_R1 submitted_unaligned CPTAC3 be6461f0-fa53-47f5-a156-8d6704c0220e 918485b323551f56574a26d0a612f66e {"aliquot_tag": "ALQ_80fa0505", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.miRNA-Seq.T.hg38 C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 036b0644-94e0-4323-9844-df465047b136_mirnaseq_gdc_realn.bam 807988377 BAM harmonized CPTAC3 0f62c070-7891-44dc-9cf4-32f40d9c9ecd 183f3644a5f2a68857f6b717c0088044 {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.RNA-Seq.chimeric.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.chimeric.gdc_realn.bam 73674455 BAM chimeric harmonized CPTAC3 8909d365-d3fe-4ec8-87fb-21c8b2374f22 029981e4f914961ae3cef4e2e6e62c0c {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.RNA-Seq.genomic.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.genomic.gdc_realn.bam 8876154296 BAM genomic harmonized CPTAC3 b19bbddb-a88f-4b3c-a074-cc49796f623a 2e3d75e21533e6456962046277addc40 {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.RNA-Seq.S9_L004_R1.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R1_001.fastq.gz 4078231570 FASTQ S9_L004_R1 submitted_unaligned CPTAC3 3c187320-d811-4fd4-ad3f-98b60e63efad 7b76738a7dc5c6819b2c5813af448dcc {"aliquot_tag": "ALQ_80fa0505", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.RNA-Seq.S9_L004_R2.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R2_001.fastq.gz 4522993021 FASTQ S9_L004_R2 submitted_unaligned CPTAC3 c02c1bc2-0f97-410f-b614-e61afdf267c3 64abaafebb6ced4264e7151b962c29c7 {"aliquot_tag": "ALQ_80fa0505", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.RNA-Seq.transcriptome.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.transcriptome.gdc_realn.bam 12963684076 BAM transcriptome harmonized CPTAC3 b1198dfd-06b5-4a71-ad5c-032378482799 dd3351089e1abbb861827d109017a214 {"aliquot_tag": "ALQ_80fa0505", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.WGS.N C3N-00211 LSCC WGS blood_normal CPT0092490002 CPT0092490002.WholeGenome.RP-1303.bam 66392924448 BAM submitted_aligned CPTAC3 565655ed-29be-4590-9413-9441187dc6fb df4eb32914dadd6d13c0daae9c56beb6 {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00211.WGS.N.hg38 C3N-00211 LSCC WGS blood_normal CPT0092490002 bbab7603-c304-4c44-a735-91e677083ee9_wgs_gdc_realn.bam 98091811789 BAM harmonized CPTAC3 0ebfa20c-097f-47c4-afb3-9688c6c5b074 a677e14acb4b4c02de45232884e0a72f {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00211.WGS.T C3N-00211 LSCC WGS tumor CPT0090440009 CPT0090440009.WholeGenome.RP-1303.bam 73993095860 BAM submitted_aligned CPTAC3 82393638-7bf1-4639-8279-37cc17ad003f 1b95bdbed75e9fb814da2ef4ce2e10f3 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.WGS.T.hg38 C3N-00211 LSCC WGS tumor CPT0090440009 7ac573c7-ed1b-4085-a310-805e1aff4b20_wgs_gdc_realn.bam 108456934879 BAM harmonized CPTAC3 97d83f5f-a371-45c5-8075-bb02b43655ce 13ee85cbee60c8fe7b099684baa3fe39 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.WXS.N C3N-00211 LSCC WXS blood_normal CPT0092490002 CPT0092490002.WholeExome.RP-1303.bam 40576173962 BAM submitted_aligned CPTAC3 25f4a00b-12a4-461a-af6e-bd21d212a224 71ea608011c8b4b79d08a97031ea54f1 {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00211.WXS.N.hg38 C3N-00211 LSCC WXS blood_normal CPT0092490002 bbab7603-c304-4c44-a735-91e677083ee9_wxs_gdc_realn.bam 53607358989 BAM harmonized CPTAC3 7f5f833c-d120-4318-97b6-8988f74e29e3 4ba755af92e1000478c0ee471c45888f {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00211.WXS.T C3N-00211 LSCC WXS tumor CPT0090440009 CPT0090440009.WholeExome.RP-1303.bam 38073808710 BAM submitted_aligned CPTAC3 e23a0176-239f-4d2d-9daf-2a54a46b21c3 f0016248a78001fe8af8543250f24efa {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00211.WXS.T.hg38 C3N-00211 LSCC WXS tumor CPT0090440009 7ac573c7-ed1b-4085-a310-805e1aff4b20_wxs_gdc_realn.bam 51587274152 BAM harmonized CPTAC3 5475774a-cfde-4aa3-8cd1-85fda9e6260f bdd0bf8c3a979f119c6e555130ee3135 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.DUP_f8438300.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM submitted_aligned CPTAC3 b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00217.DUP_f8438300.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM harmonized CPTAC3 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00217.MethArray.Green.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 73731e5f-72f0-4b4c-b2b3-a799ffe23fdb c6620ec6eefba1771976d282b5190b0e {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.MethArray.Green.T C3N-00217 LUAD Methylation_Array tumor CPT0090570010 202234360025_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79a982ef-e333-401b-8314-c23d667f1a40 36b5453c0b6395390b2bfa4205a5213b {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.MethArray.Red.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cf25d240-6ed7-44cc-afa5-d802b41507ac 6c30c58c65c3c519eb1ce6743337e030 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.MethArray.Red.T C3N-00217 LUAD Methylation_Array tumor CPT0090570010 202234360025_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 bb22bf0b-8e9b-498f-a2e5-82a5d798c79c f88feb02f262aeab6e4786aa9d62a4ab {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.miRNA-Seq.A.hg38 C3N-00217 LUAD miRNA-Seq tissue_normal CPT0090600006 46d13078-2da3-4f6f-abd2-400ff147a2be_mirnaseq_gdc_realn.bam 234491117 BAM harmonized CPTAC3 9c148c16-b6c3-4164-b32b-fbdc60fb3b3c 0b43302d067b5df8dbb94dcc426cc927 {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.miRNA-Seq.S1_L007_R1.T C3N-00217 LUAD miRNA-Seq tumor CPT0090570007 180724_UNC32-K00270_0106_BHWK3MBBXX_ACTGAT_S1_L007_R1_001.unaln.bam 252257079 BAM S1_L007_R1 submitted_unaligned CPTAC3 1df9a109-b385-43d0-b6de-516e5a9ab429 da1cb5445aa689cc21c1feabd4a80da2 {"aliquot_tag": "ALQ_7b019ce6", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.miRNA-Seq.S6_L005_R1.A C3N-00217 LUAD miRNA-Seq tissue_normal CPT0090600006 181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L005_R1_001.unaln.bam 211425412 BAM S6_L005_R1 submitted_unaligned CPTAC3 480bc31f-54d5-4917-abf4-4cb7e4b517ca e63093e9c1f1fc88809af574c582d64a {"aliquot_tag": "ALQ_38b202ce", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.miRNA-Seq.T.hg38 C3N-00217 LUAD miRNA-Seq tumor CPT0090570007 9793679d-999d-4561-bc25-beed6e53e40c_mirnaseq_gdc_realn.bam 275844663 BAM harmonized CPTAC3 89bc076d-da15-417b-9e5d-ff18560d1fd9 51a06e8de71d56bc075d62816a254852 {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.RNA-Seq.chimeric.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.chimeric.gdc_realn.bam 243867610 BAM chimeric harmonized CPTAC3 c38aa306-6658-4f94-8aef-5f26104a7f53 13a2de0c92dcd9a006254fcd02a89a45 {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.RNA-Seq.chimeric.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.chimeric.gdc_realn.bam 111857221 BAM chimeric harmonized CPTAC3 cc8d6bbe-fa59-4799-9e20-f7aef45f83bc 4b59f28910886c7c94270a6b59d7473d {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.RNA-Seq.genomic.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.genomic.gdc_realn.bam 8976709601 BAM genomic harmonized CPTAC3 2c96d195-8899-456c-b075-d120163f1f7d 3f889f95948d398d2f28e638adf3fff8 {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.RNA-Seq.genomic.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.genomic.gdc_realn.bam 10003931541 BAM genomic harmonized CPTAC3 abf62714-99e5-43ba-95cf-2d36ad002406 ab9d46f7e7bc41be32c2681482d30316 {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.RNA-Seq.S15_L004_R1.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R1_001.fastq.gz 4318279450 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 9a546dfe-983b-47a5-ad79-9d3afa19bed3 2f727b6e7347ed44ba5dc392072797d4 {"aliquot_tag": "ALQ_38b202ce", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.RNA-Seq.S15_L004_R2.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R2_001.fastq.gz 4749207885 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 140a1e6f-0963-4fc7-a207-b117dffcf933 68019584fc7d435b6c297730da58faaa {"aliquot_tag": "ALQ_38b202ce", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.RNA-Seq.S5_L007_R1.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R1_001.fastq.gz 4555561516 FASTQ S5_L007_R1 submitted_unaligned CPTAC3 e5407d3d-fda5-420e-8233-10820ba34973 a930133ef306f9512411c0627bb67fe3 {"aliquot_tag": "ALQ_7b019ce6", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.RNA-Seq.S5_L007_R2.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R2_001.fastq.gz 4514469542 FASTQ S5_L007_R2 submitted_unaligned CPTAC3 eb613c5b-712d-47f8-9b32-7391e77b8c8e 0ce18b237a957b79f94a99c93654a504 {"aliquot_tag": "ALQ_7b019ce6", "sample": "S5", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.RNA-Seq.transcriptome.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.transcriptome.gdc_realn.bam 9661243344 BAM transcriptome harmonized CPTAC3 09be940c-462f-4a43-8356-7a2ff8cf5fa9 90ae7821928c003f9c3a08e621f4c49f {"aliquot_tag": "ALQ_38b202ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.RNA-Seq.transcriptome.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.transcriptome.gdc_realn.bam 10541864499 BAM transcriptome harmonized CPTAC3 6da5a0f2-129e-4584-9a33-4f6660c06816 269ab54b17e52123bf9585a982b8059e {"aliquot_tag": "ALQ_7b019ce6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.WGS.A C3N-00217 LUAD WGS tissue_normal CPT0090600009 CPT0090600009.WholeGenome.RP-1303.bam 57069814766 BAM submitted_aligned CPTAC3 b5a7eb16-f4f3-4c9d-8069-47ef63483a75 e69ffadaedc686535030693f088edc14 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.WGS.A.hg38 C3N-00217 LUAD WGS tissue_normal CPT0090600009 e21dba0d-f7c8-43ca-abe2-d532ac286c53_wgs_gdc_realn.bam 83476535203 BAM harmonized CPTAC3 8a7ee755-ceea-47c5-ae5c-fdd1ee99b963 fa4f74359aa55ab383fd522f7afa8aa0 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.WGS.N C3N-00217 LUAD WGS blood_normal CPT0092500002 CPT0092500002.WholeGenome.RP-1303.bam 57169983784 BAM submitted_aligned CPTAC3 0b634eca-faea-4af5-8c8e-7f285876e059 010b6552401c97113c68b22bf3cbf3fa {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00217.WGS.N.hg38 C3N-00217 LUAD WGS blood_normal CPT0092500002 df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wgs_gdc_realn.bam 82819130250 BAM harmonized CPTAC3 7c0fa13b-ae71-42df-800a-a9480cc67133 c53a7e2b9034753a377407f251aa13af {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00217.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010 CPT0090570010.WholeGenome.RP-1303.bam 77202007467 BAM submitted_aligned CPTAC3 c0c2069c-1cd9-4e3b-ae40-4617f7c010dd 2cd3b8753fec2a69f03f85c588e0d6bb {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010 e6268f9c-fd73-4163-8824-eca1dab52d32_wgs_gdc_realn.bam 111488141459 BAM harmonized CPTAC3 c3101c27-4922-4e8e-890a-d8f838e04751 88e105dd4bc8e4e64dfe5d24c7fc1f75 {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.WXS.A C3N-00217 LUAD WXS tissue_normal CPT0090600009 CPT0090600009.WholeExome.RP-1303.bam 35193499504 BAM submitted_aligned CPTAC3 a81d1be0-5e52-42a1-877e-6e3354c41ae0 049a85e9fe159a49f5b954c1d6c6bfb1 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.WXS.A.hg38 C3N-00217 LUAD WXS tissue_normal CPT0090600009 e21dba0d-f7c8-43ca-abe2-d532ac286c53_wxs_gdc_realn.bam 48560284391 BAM harmonized CPTAC3 bb1871eb-69df-4c1e-a654-bd2212f6a763 d76fd0c2027b4f42ed025ef3a60fefc1 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00217.WXS.N C3N-00217 LUAD WXS blood_normal CPT0092500002 CPT0092500002.WholeExome.RP-1303.bam 25344310806 BAM submitted_aligned CPTAC3 b6c851ae-dc4e-4364-91ce-87754a3cd60f 23d61aac67f08a677639acdd786f8e2e {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00217.WXS.N.hg38 C3N-00217 LUAD WXS blood_normal CPT0092500002 df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wxs_gdc_realn.bam 34804905466 BAM harmonized CPTAC3 e088330e-c0af-4151-83e6-9dff9555d3eb 6a5f15a705d061ad80d01757154af1fe {"aliquot_tag": "ALQ_2ed4a550", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00217.WXS.T C3N-00217 LUAD WXS tumor CPT0090570010 CPT0090570010.WholeExome.RP-1303.bam 28653607883 BAM submitted_aligned CPTAC3 88fea8a7-a18c-4575-80de-cae65810d5d6 ec01f093fb7fa8e5c561dc42f4db1d9e {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00217.WXS.T.hg38 C3N-00217 LUAD WXS tumor CPT0090570010 e6268f9c-fd73-4163-8824-eca1dab52d32_wxs_gdc_realn.bam 38671141761 BAM harmonized CPTAC3 7139938c-1a84-43b5-9956-05b7f2894847 4710511e84a5c554bbe49771e48e298a {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.MethArray.Green.T C3N-00221 LSCC Methylation_Array tumor CPT0111150015 203219640160_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 88317901-3cbb-4b3c-b9e3-2c78c14bd43e c645436cd18072ab593bebd64b99df13 {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.MethArray.Red.T C3N-00221 LSCC Methylation_Array tumor CPT0111150015 203219640160_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 6440394c-f2a3-4bbc-8d02-ef170610c855 c087dc7ee33b61f40b1b17f908c3ceaa {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.miRNA-Seq.A.hg38 C3N-00221 LSCC miRNA-Seq tissue_normal CPT0111000007 a38f5f51-7d68-45dc-951f-015b6c604744_mirnaseq_gdc_realn.bam 329365944 BAM harmonized CPTAC3 26f0a7f7-853d-468f-ab21-c29c0d0e8602 cf35f06d46a0d0f566009cc488445086 {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00221.miRNA-Seq.S2_L001_R1.T C3N-00221 LSCC miRNA-Seq tumor CPT0111150007 181219_UNC31-K00269_0173_BHYGJJBBXX_CGATGT_S2_L001_R1_001.unaln.bam 236080532 BAM S2_L001_R1 submitted_unaligned CPTAC3 6292ddea-24ba-4053-9938-1f31bfa745d3 39316f9adb7ae59f2fac2e6cce53b7e0 {"aliquot_tag": "ALQ_f8b989d2", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.miRNA-Seq.S30_L002_R1.A C3N-00221 LSCC miRNA-Seq tissue_normal CPT0111000007 181219_UNC31-K00269_0173_BHYGJJBBXX_CACGAT_S30_L002_R1_001.unaln.bam 293288828 BAM S30_L002_R1 submitted_unaligned CPTAC3 6033813a-1c85-4f16-951b-8a4adbe013c6 4b7062a0807bbae0ba63227bd109fa74 {"aliquot_tag": "ALQ_fb05d507", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00221.miRNA-Seq.T.hg38 C3N-00221 LSCC miRNA-Seq tumor CPT0111150007 4cd3dbec-5e78-481d-915a-6d538b8eb5e2_mirnaseq_gdc_realn.bam 270964165 BAM harmonized CPTAC3 012bd74a-be82-4fc0-9170-f8b967476101 a626512eb86c2289be0f656bff1f6b8c {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.RNA-Seq.chimeric.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.chimeric.gdc_realn.bam 26883999 BAM chimeric harmonized CPTAC3 608ecee4-e391-4b59-8482-97d9c315bd91 19772f9759da203d085f7e7b5e99fe41 {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00221.RNA-Seq.chimeric.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.chimeric.gdc_realn.bam 39075323 BAM chimeric harmonized CPTAC3 ab3878c6-be84-49ce-9589-460f21b1f6a5 1b2f507ef0c1f4b1edbf02fc7a66c7e1 {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.RNA-Seq.genomic.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.genomic.gdc_realn.bam 8441938245 BAM genomic harmonized CPTAC3 a8cd3578-fe2b-453d-9a50-cf624cc72af7 a1ab4c0ecb68fc4f0fff2c87ca6d8c9b {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00221.RNA-Seq.genomic.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.genomic.gdc_realn.bam 11892176654 BAM genomic harmonized CPTAC3 80b50854-a43e-4b4c-8e04-cdea2867962e 504c42f382c32a56752c0ff98569a380 {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.RNA-Seq.S13_L004_R1.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3863695326 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 d7426049-340e-4148-b92c-fe817878b2bd d0299da69eb3b4835d05ec240cab5b4c {"aliquot_tag": "ALQ_fb05d507", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00221.RNA-Seq.S13_L004_R2.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4084446309 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 8758b923-ae9a-4e57-b528-e25449795afe 330c9414cbf88230e40001543ac4997c {"aliquot_tag": "ALQ_fb05d507", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00221.RNA-Seq.S18_L005_R1.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R1_001.fastq.gz 5366348432 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 24921c1c-441e-413e-9e56-46774caf94dc 89e2d333ecd1009dc58fd83fb90ec096 {"aliquot_tag": "ALQ_f8b989d2", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.RNA-Seq.S18_L005_R2.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R2_001.fastq.gz 5575959558 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 34b62585-10bc-48c6-a1c6-807c613a848b 765dc94adb665b235fa6e39fa4b87672 {"aliquot_tag": "ALQ_f8b989d2", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.RNA-Seq.transcriptome.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.transcriptome.gdc_realn.bam 9730753317 BAM transcriptome harmonized CPTAC3 486b8f88-d5b2-4224-96fe-ec16e81dfb60 e7af194a1430e880812375a0d6a3c260 {"aliquot_tag": "ALQ_fb05d507", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00221.RNA-Seq.transcriptome.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.transcriptome.gdc_realn.bam 14798215729 BAM transcriptome harmonized CPTAC3 2a753e6b-225f-4b7b-b5d3-8967b405a409 d6c0f65b79687bd8b490133d001cb041 {"aliquot_tag": "ALQ_f8b989d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.WGS.N C3N-00221 LSCC WGS blood_normal CPT0111280005 CPT0111280005.WholeGenome.RP-1303.bam 61779866202 BAM submitted_aligned CPTAC3 2b3dbae5-cdd9-429d-866e-a01dada219ee 95b90eb8921b0d01081ec5d7bcf6eccc {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00221.WGS.N.hg38 C3N-00221 LSCC WGS blood_normal CPT0111280005 5c67075a-e5ac-4324-80fd-d1d15e0331da_wgs_gdc_realn.bam 89632830119 BAM harmonized CPTAC3 20eadfd0-2177-4684-bd76-6191a4387ec9 650e403e5ca737d2a26c499772ade766 {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00221.WGS.T C3N-00221 LSCC WGS tumor CPT0111150015 CPT0111150015.WholeGenome.RP-1303.bam 61952007020 BAM submitted_aligned CPTAC3 ed0937df-a98f-42ef-a57e-fb3a28884386 2435c69544c68681bfe0737aa09e6052 {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.WGS.T.hg38 C3N-00221 LSCC WGS tumor CPT0111150015 474f12bc-db60-42d9-b11b-400bf4338ada_wgs_gdc_realn.bam 89726320658 BAM harmonized CPTAC3 54836e99-46d5-40d2-b523-f4b782588dd0 a2fcea82c90d8eadc278cd684f4b41eb {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.WXS.N C3N-00221 LSCC WXS blood_normal CPT0111280005 CPT0111280005.WholeExome.RP-1303.bam 29443926175 BAM submitted_aligned CPTAC3 1101a23e-424f-423e-93ae-bb1ca379ea0d 72305e86313c6a23df97da226dae49be {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00221.WXS.N.hg38 C3N-00221 LSCC WXS blood_normal CPT0111280005 5c67075a-e5ac-4324-80fd-d1d15e0331da_wxs_gdc_realn.bam 40929034020 BAM harmonized CPTAC3 7e51f93b-4b7d-4ca4-8219-ed573476b6b8 a27d22359c14df245fc2645fb19d0998 {"aliquot_tag": "ALQ_68b35ee1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00221.WXS.T C3N-00221 LSCC WXS tumor CPT0111150015 CPT0111150015.WholeExome.RP-1303.bam 23269028060 BAM submitted_aligned CPTAC3 f6bc4639-70d3-4b65-8550-0e14da308d9c 9b8b534cead2450b5622e6b2de0a64fc {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00221.WXS.T.hg38 C3N-00221 LSCC WXS tumor CPT0111150015 474f12bc-db60-42d9-b11b-400bf4338ada_wxs_gdc_realn.bam 31875258454 BAM harmonized CPTAC3 6e7524a2-1023-4343-846d-82da4b2c3e1a 5e88a55983d33ad97314a2b73c615f75 {"aliquot_tag": "ALQ_facd9bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.MethArray.Green.T C3N-00223 LUAD Methylation_Array tumor CPT0111300009 202234370091_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 162a6fe8-fc16-4dd7-b213-2853caa6ed57 860951b11f0593eec323e64e39a228fe {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.MethArray.Red.T C3N-00223 LUAD Methylation_Array tumor CPT0111300009 202234370091_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d6cd0655-e0ca-45df-964d-c8445feb28c8 6d81b65ed9636e25370ddcfd04fdf810 {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.miRNA-Seq.A.hg38 C3N-00223 LUAD miRNA-Seq tissue_normal CPT0111480006 c3592d55-763c-4cd0-a13b-7b4f0535c739_mirnaseq_gdc_realn.bam 267609282 BAM harmonized CPTAC3 c7056b65-a287-4cb6-b036-117901f5f843 70486a4490fb071ed0d282da255cef02 {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.miRNA-Seq.S29_L005_R1.A C3N-00223 LUAD miRNA-Seq tissue_normal CPT0111480006 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L005_R1_001.unaln.bam 242369634 BAM S29_L005_R1 submitted_unaligned CPTAC3 92a16730-eae0-411c-afd7-4f5dbd42b6b6 2820dabc07c6d8c49f0cbd6da1c03ecc {"aliquot_tag": "ALQ_27e3ec46", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.miRNA-Seq.S44_L007_R1.T C3N-00223 LUAD miRNA-Seq tumor CPT0111300006 181108_UNC31-K00269_0163_BH23TVBBXY_TATAAT_S44_L007_R1_001.unaln.bam 329810699 BAM S44_L007_R1 submitted_unaligned CPTAC3 ee46fe43-a60a-4c21-a0df-d08107062982 4fe8364f81c38a86d7c9c709871961fb {"aliquot_tag": "ALQ_a96973f", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.miRNA-Seq.T.hg38 C3N-00223 LUAD miRNA-Seq tumor CPT0111300006 b2f9e69e-3d83-4109-baf0-da243af87794_mirnaseq_gdc_realn.bam 359353426 BAM harmonized CPTAC3 21947907-51c2-41cc-ac83-9f94bc6a217c e0651b5b74f79b4b05ccb51536cec36b {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.RNA-Seq.chimeric.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.chimeric.gdc_realn.bam 128922673 BAM chimeric harmonized CPTAC3 fcdf3c9f-7fdb-456d-9424-550a8840e251 53ba60458e725d3f544a600db1563afa {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.RNA-Seq.chimeric.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.chimeric.gdc_realn.bam 34032739 BAM chimeric harmonized CPTAC3 a952d868-aa52-41b9-ac2d-1f52b4ed34d1 fe56c81926bb4ff0015cfa1559d1ed58 {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.RNA-Seq.genomic.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.genomic.gdc_realn.bam 8812843488 BAM genomic harmonized CPTAC3 1d4968d5-5213-4e8a-aa08-073b2f2aa53d bfab9fc87dd7e150e59ba27172b27480 {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.RNA-Seq.genomic.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.genomic.gdc_realn.bam 7875255772 BAM genomic harmonized CPTAC3 8b1f50d0-3155-47c2-b412-7d72eece65eb a4c4e35e738a2323dd3ee670c85adf1b {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.RNA-Seq.S18_L005_R1.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3768036132 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 25949a10-491a-44e9-a687-7fbf243a8c4e 564d7afc79df3c773aad95f1ce0dfce1 {"aliquot_tag": "ALQ_a96973f", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.RNA-Seq.S18_L005_R2.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4132119545 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 3a1999f7-a95a-4af4-934a-b1e6f6e41f65 fc2fc01168797e0b76ba96e887a1674a {"aliquot_tag": "ALQ_a96973f", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.RNA-Seq.S1_L007_R1.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R1_001.fastq.gz 4341284490 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 69b9dcc6-bffb-4130-b35f-97ab47799f07 8c6dc3849593959f6d4dd36b7265ffb1 {"aliquot_tag": "ALQ_27e3ec46", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.RNA-Seq.S1_L007_R2.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R2_001.fastq.gz 4769840822 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 f4ffc662-bc2c-4bfc-8829-d9428de3eec9 c124f2cd567b69e2fb739479b26fba44 {"aliquot_tag": "ALQ_27e3ec46", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.RNA-Seq.transcriptome.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.transcriptome.gdc_realn.bam 10295378135 BAM transcriptome harmonized CPTAC3 34ff5e4f-217b-41c7-8dc8-c4740c9958a9 f011cb2a7cc63bc2c8aab9768d1d8d3e {"aliquot_tag": "ALQ_27e3ec46", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.RNA-Seq.transcriptome.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.transcriptome.gdc_realn.bam 10640529966 BAM transcriptome harmonized CPTAC3 008165be-8a6e-4842-8339-3768bdc493e3 c5cf8e65a10efcf40c935782c72ea9f0 {"aliquot_tag": "ALQ_a96973f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.WGS.A C3N-00223 LUAD WGS tissue_normal CPT0111480008 CPT0111480008.WholeGenome.RP-1303.bam 59129725734 BAM submitted_aligned CPTAC3 1d3e718d-79fe-407c-ad1c-559e55c0ed8d e28618022be4bde98cd6e80428c3fa29 {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.WGS.A.hg38 C3N-00223 LUAD WGS tissue_normal CPT0111480008 82c5882b-db28-4fef-a849-52a1e67e9422_wgs_gdc_realn.bam 86279209348 BAM harmonized CPTAC3 012bb22b-c53b-45b2-a1d3-43e7f96f2474 73c88088ac8deebb42985eadb4053f7f {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.WGS.N C3N-00223 LUAD WGS blood_normal CPT0111560002 CPT0111560002.WholeGenome.RP-1303.bam 65830152798 BAM submitted_aligned CPTAC3 62956235-9f3c-465a-9ec5-0e5e093be3a6 48c5ba0b357d7ec0a6804fcba3deaaaa {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00223.WGS.N.hg38 C3N-00223 LUAD WGS blood_normal CPT0111560002 1bd914de-77b5-40a2-92cd-d59097de853f_wgs_gdc_realn.bam 97741387306 BAM harmonized CPTAC3 eab0894a-13ab-4a8f-8de5-1a503dd3a441 dcd9b07bfbe6f90a4a8974d9ecba2c9d {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00223.WGS.T C3N-00223 LUAD WGS tumor CPT0111300009 CPT0111300009.WholeGenome.RP-1303.bam 61012171758 BAM submitted_aligned CPTAC3 b22179f6-24e0-42e7-b798-ff1b86393de5 1ffd9dd95b4b862c0b02684c42afd490 {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.WGS.T.hg38 C3N-00223 LUAD WGS tumor CPT0111300009 c21b39c5-2ee8-4071-832e-febc767e64aa_wgs_gdc_realn.bam 89060004286 BAM harmonized CPTAC3 f99a50c7-1a1d-4db0-9e9c-4ce5b16e60c4 439be2af9dbaa7161b9483789aad82de {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.WXS.A C3N-00223 LUAD WXS tissue_normal CPT0111480008 CPT0111480008.WholeExome.RP-1303.bam 36159752972 BAM submitted_aligned CPTAC3 f1131f4b-67a9-4c11-84e6-3a4a69e9304b 11dbcf6f5603a9df42460dba6d94bc86 {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.WXS.A.hg38 C3N-00223 LUAD WXS tissue_normal CPT0111480008 82c5882b-db28-4fef-a849-52a1e67e9422_wxs_gdc_realn.bam 49263203762 BAM harmonized CPTAC3 55baae83-957d-424e-b77e-6f90d92e15b6 a670fdf26b2f9bd7877fc402ddfa901c {"aliquot_tag": "ALQ_c05bc141", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00223.WXS.N C3N-00223 LUAD WXS blood_normal CPT0111560002 CPT0111560002.WholeExome.RP-1303.bam 28475014721 BAM submitted_aligned CPTAC3 1c41838a-55d7-4b99-9409-6a757503ed94 4f7225da0096cdf90ff1c5cedfb216ad {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00223.WXS.N.hg38 C3N-00223 LUAD WXS blood_normal CPT0111560002 1bd914de-77b5-40a2-92cd-d59097de853f_wxs_gdc_realn.bam 37699758451 BAM harmonized CPTAC3 b571dd7d-8429-4e67-bbdc-e2f6af4e92ac a0a80780fc05a4c7a15009626b0d345d {"aliquot_tag": "ALQ_54e2459b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00223.WXS.T C3N-00223 LUAD WXS tumor CPT0111300009 CPT0111300009.WholeExome.RP-1303.bam 27945533979 BAM submitted_aligned CPTAC3 026925cc-11b6-4e84-a18b-1bc3bdce427c 940dc41a0aed204f8b363a7cfa42b7ef {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00223.WXS.T.hg38 C3N-00223 LUAD WXS tumor CPT0111300009 c21b39c5-2ee8-4071-832e-febc767e64aa_wxs_gdc_realn.bam 37777693232 BAM harmonized CPTAC3 f441e9d6-5c2d-4be0-b158-a4cac18a0156 4527b6f29ff030ddfd8678cb4262d5f9 {"aliquot_tag": "ALQ_9a298aae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00229.MethArray.Green.T C3N-00229 LSCC Methylation_Array tumor CPT0265030011 204372030161_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8e37c14c-7a5a-4694-95c8-d6872fca6c67 91d470fd94e6c5bf8dd9cd8fc6fef1c0 {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.MethArray.Red.T C3N-00229 LSCC Methylation_Array tumor CPT0265030011 204372030161_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 241c90ac-8993-42f8-a3f0-dbd231065218 7392a94f2aa6666fc739022ab433257b {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.miRNA-Seq.A.hg38 C3N-00229 LSCC miRNA-Seq tissue_normal CPT0265050006 b67e6b05-dfc7-4bc2-b25f-68e7209ce895_mirnaseq_gdc_realn.bam 293326928 BAM harmonized CPTAC3 b028a022-7c8c-4d72-b51f-c12de341cd50 679d0ba4d70878e55f1336cbebd9eb5d {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00229.miRNA-Seq.S7_L006_R1.T C3N-00229 LSCC miRNA-Seq tumor CPT0265030014 200224_UNC31-K00269_0267_AHC722BBXY_CAGATC_S7_L006_R1_001.unaln.bam 228953679 BAM S7_L006_R1 submitted_unaligned CPTAC3 80a1bf47-0ae4-42b2-ba81-3ed0c0aeabb5 70abf93e7cb8eccd7f0f3b8e5dbdc00b {"aliquot_tag": "ALQ_fbb0dee3", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.miRNA-Seq.S7_L007_R1.A C3N-00229 LSCC miRNA-Seq tissue_normal CPT0265050006 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAGATC_S7_L007_R1_001.unaln.bam 259346668 BAM S7_L007_R1 submitted_unaligned CPTAC3 6d2f72d2-4a8f-446d-8b37-678ae3a1d5d1 7fdd61dd67ddd1fc99875f683cac0685 {"aliquot_tag": "ALQ_83e57b2e", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00229.miRNA-Seq.T.hg38 C3N-00229 LSCC miRNA-Seq tumor CPT0265030014 fd36351b-3c82-4790-be02-c5484c91023f_mirnaseq_gdc_realn.bam 253984696 BAM harmonized CPTAC3 0f394c15-6f22-4742-8df8-65bd92fe6109 ffa2d63c4443884e12efe8aa5d12fa32 {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.RNA-Seq.chimeric.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.chimeric.gdc_realn.bam 45584502 BAM chimeric harmonized CPTAC3 aa6bccdb-9b53-4a57-89b2-61251274b090 694734524f8ca1c3835548d1754a6cbd {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00229.RNA-Seq.chimeric.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.chimeric.gdc_realn.bam 76957484 BAM chimeric harmonized CPTAC3 9abfafbc-37d3-4dd0-8039-bf03a19ed55a ff1a8eaa2240e95c1dad2e76e7f06f2d {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.RNA-Seq.genomic.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.genomic.gdc_realn.bam 6465757341 BAM genomic harmonized CPTAC3 78b52602-8768-4be9-9139-ef994c249213 b1beb0dd594bb7be9100f606ee031806 {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00229.RNA-Seq.genomic.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.genomic.gdc_realn.bam 7137662010 BAM genomic harmonized CPTAC3 c127a1c0-fb5a-4115-92b0-1f1984e0d54a e14025834df866155cdbd5b08bf54ec9 {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.RNA-Seq.S23_L006_R1.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R1_001.fastq.gz 3474700033 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 91099a98-a5b3-4b2f-8098-d7355358e842 c115ef2c4dee20505df5f3bb54d25b85 {"aliquot_tag": "ALQ_fbb0dee3", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.RNA-Seq.S23_L006_R2.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R2_001.fastq.gz 3667028811 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 821addd9-374c-45f2-ac22-5e9d70d73183 5b7ff3b9f7d833181f7a0a54bddec434 {"aliquot_tag": "ALQ_fbb0dee3", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.RNA-Seq.S5_L002_R1.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3143893620 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 8eecdbc0-da13-49cc-a077-e2156c6345b9 2fefe50689b1dc213a21f809a01baec3 {"aliquot_tag": "ALQ_83e57b2e", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00229.RNA-Seq.S5_L002_R2.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 3560014410 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 8e84d510-4d25-470e-ac2b-3f852ec50a8b 94a133f50f254943af6e75b7f70dd610 {"aliquot_tag": "ALQ_83e57b2e", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00229.RNA-Seq.transcriptome.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.transcriptome.gdc_realn.bam 7550616478 BAM transcriptome harmonized CPTAC3 160ef33d-39d0-41c4-adea-dc1ba00f68e1 455382728ae335fb7e8bbd746a216eca {"aliquot_tag": "ALQ_83e57b2e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00229.RNA-Seq.transcriptome.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.transcriptome.gdc_realn.bam 9238550533 BAM transcriptome harmonized CPTAC3 7bde526d-5029-4d6a-9658-b5857fff749a 8ca4bd7be493057ca7897b9fe3813b3f {"aliquot_tag": "ALQ_fbb0dee3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.WGS.N C3N-00229 LSCC WGS blood_normal CPT0264000002 CPT0264000002.WholeGenome.RP-2158.bam 21559294645 BAM submitted_aligned CPTAC3 df5c6b48-3839-4e83-aaf2-66228c4fade8 610f6ce9d95246865e9fcde02c7f3004 {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00229.WGS.N.hg38 C3N-00229 LSCC WGS blood_normal CPT0264000002 985912ac-ab9b-4695-9325-45f735634db5_wgs_gdc_realn.bam 63957077050 BAM harmonized CPTAC3 a5240ef5-a117-493a-90b1-be4f9d0de625 3617d0c5d742fbfe21e5054a7fd9e75d {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00229.WGS.T C3N-00229 LSCC WGS tumor CPT0265030011 CPT0265030011.WholeGenome.RP-2158.bam 24630818287 BAM submitted_aligned CPTAC3 a478952a-3305-4f8c-8ef0-c733eb86cbdf 074ae3a323eb1cc6873297eaf95f3e3c {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.WGS.T.hg38 C3N-00229 LSCC WGS tumor CPT0265030011 95c72196-e6f7-4709-a625-91fc6212cadd_wgs_gdc_realn.bam 71011595844 BAM harmonized CPTAC3 cd067844-4016-4ae5-adeb-2e2d3f1a0f06 e2f788379ec190bf5fad1fd32420db5c {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.WXS.N C3N-00229 LSCC WXS blood_normal CPT0264000002 CPT0264000002.WholeExome.RP-1303.bam 24319809375 BAM submitted_aligned CPTAC3 b2836abb-affe-4172-8385-db77f010da82 3367f1d4d8f8052b60a9c3157527c2c9 {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00229.WXS.N.hg38 C3N-00229 LSCC WXS blood_normal CPT0264000002 985912ac-ab9b-4695-9325-45f735634db5_wxs_gdc_realn.bam 33278656245 BAM harmonized CPTAC3 70335b9f-f3f5-41ef-87e5-d852ed60f50a 649e2b99abdc4e874c95a06864ab4317 {"aliquot_tag": "ALQ_ea1f3bf3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00229.WXS.T C3N-00229 LSCC WXS tumor CPT0265030011 CPT0265030011.WholeExome.RP-1303.bam 37540971525 BAM submitted_aligned CPTAC3 ae5d5cdb-046c-43b2-bae9-8aa3dafecb4d f233c2f8eb748a031d29a1202ef090e4 {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00229.WXS.T.hg38 C3N-00229 LSCC WXS tumor CPT0265030011 95c72196-e6f7-4709-a625-91fc6212cadd_wxs_gdc_realn.bam 52393911323 BAM harmonized CPTAC3 ab6662b5-9a7a-4071-af36-1090634cb45d 91ea40c878b2577870215bf0e29933a6 {"aliquot_tag": "ALQ_8bda2a6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00242.ADD_6a488767.miRNA-Seq.S40_L004_R1.T C3N-00242 CCRCC miRNA-Seq tumor CPT0014450010 181113_UNC31-K00269_0164_AH23NNBBXY_CCGTCC_S40_L004_R1_001.unaln.bam 296093900 BAM S40_L004_R1 submitted_unaligned CPTAC3 047721f8-2d41-4cea-9513-70aa29ce4dae e847b0f98c9dec6d657a7a947fc1cb64 {"aliquot_tag": "ADD_6a488767", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.ADD_6a488767.miRNA-Seq.T.hg38 C3N-00242 CCRCC miRNA-Seq tumor CPT0014450010 2ce08b9c-36dd-4c3e-ad85-70fd9936bb3e_mirnaseq_gdc_realn.bam 323991248 BAM harmonized CPTAC3 85340479-8cdd-4717-92dc-f0ac99912d06 69c3f5c0ca2edb437a7fabca5bbe3935 {"aliquot_tag": "ADD_6a488767", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.MethArray.Green.A C3N-00242 CCRCC Methylation_Array tissue_normal CPT0014470009 203027390029_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 adab0f0b-636e-49a2-a76b-f6def73b9128 eae284e193f0103860ca920ebedf9ade {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.MethArray.Green.T C3N-00242 CCRCC Methylation_Array tumor CPT0014450007 202163550115_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b1f06d0f-f646-4ec9-89c0-02b8685a83e1 d2fea7fe8ecf9bd42ae3bb782a2ff615 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.MethArray.Red.A C3N-00242 CCRCC Methylation_Array tissue_normal CPT0014470009 203027390029_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 673df5c2-c27c-4381-947f-7a657461d5da ea17fcc10dc2afc9a3fc836440fa05fc {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.MethArray.Red.T C3N-00242 CCRCC Methylation_Array tumor CPT0014450007 202163550115_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 e973b5e7-d9b4-4b98-9511-ceaa758e6506 1ba6b2f1908070c9b702f0d234cc8385 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.miRNA-Seq.A.hg38 C3N-00242 CCRCC miRNA-Seq tissue_normal CPT0014470006 79c4bebf-0333-45a4-af42-6b21aa4e0863_mirnaseq_gdc_realn.bam 191210722 BAM harmonized CPTAC3 045972c8-dcd1-43c7-b493-cf5134afdade 592282cbb40640674419f3ba60f01c00 {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.miRNA-Seq.S34_L004_R1.A C3N-00242 CCRCC miRNA-Seq tissue_normal CPT0014470006 181108_UNC31-K00269_0163_BH23TVBBXY_CATGGC_S34_L004_R1_001.unaln.bam 174296383 BAM S34_L004_R1 submitted_unaligned CPTAC3 c62ff64d-e23c-4e15-adf9-982456140bf3 319068623d770a023c640668b0a0d633 {"aliquot_tag": "ALQ_e0f04073", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.RNA-Seq.chimeric.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.chimeric.gdc_realn.bam 87806640 BAM chimeric harmonized CPTAC3 c3e87d69-6adb-4e63-b600-d62bcbcce964 12bfba5d3ad611bc8f87661329a19c67 {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.RNA-Seq.chimeric.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.chimeric.gdc_realn.bam 87206536 BAM chimeric harmonized CPTAC3 511da4b0-ae5c-4a4c-a286-08e40790596c 9a5976a01ad222c954aadc662b0ddad2 {"aliquot_tag": "ALQ_6d25437e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.RNA-Seq.genomic.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.genomic.gdc_realn.bam 8774579812 BAM genomic harmonized CPTAC3 fc5f9fe1-074c-41e0-81d6-c9612fa4ab9f b426d9cb41e1e1b8e3351ece1eff9fe9 {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.RNA-Seq.genomic.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.genomic.gdc_realn.bam 8066868087 BAM genomic harmonized CPTAC3 7c35a2db-4e60-4c1d-9140-bdc9f4c3d7ce a1360de2daf2234078b3f975f11af270 {"aliquot_tag": "ALQ_6d25437e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.RNA-Seq.S53_L006_R1.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R1_001.fastq.gz 4228846850 FASTQ S53_L006_R1 submitted_unaligned CPTAC3 f8182e74-736d-47e4-b14d-983de722206c 74a81860313faf1f7f059136d22f6b7f {"aliquot_tag": "ALQ_e0f04073", "sample": "S53", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.RNA-Seq.S53_L006_R2.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R2_001.fastq.gz 4511464994 FASTQ S53_L006_R2 submitted_unaligned CPTAC3 2edb4bbc-a66c-4384-b108-04369d71eb3b bf256bb9664d70b7a1861fe8e7408556 {"aliquot_tag": "ALQ_e0f04073", "sample": "S53", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.RNA-Seq.S9_L003_R1.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4039192946 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 c4e63c50-ca0a-4d7b-b997-b2d8b773c1cf 2a94684296778b6ca06260418016e7f4 {"aliquot_tag": "ALQ_6d25437e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.RNA-Seq.S9_L003_R2.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4290781502 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 e6af5a8d-aabc-4d70-8c3d-2af0f96340d6 f131fb9afca7f6253f1a5310f4737613 {"aliquot_tag": "ALQ_6d25437e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.RNA-Seq.transcriptome.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.transcriptome.gdc_realn.bam 10592316854 BAM transcriptome harmonized CPTAC3 0a44d2bc-53a1-459d-ab54-d7e456075145 951bc9df98e91c1513f74539bf9f75ac {"aliquot_tag": "ALQ_e0f04073", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.RNA-Seq.transcriptome.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.transcriptome.gdc_realn.bam 8378730527 BAM transcriptome harmonized CPTAC3 2f9d0f0f-81df-4e18-90f9-af9aae6aa314 353db8ffef9e77cdb29f6941f8d1b47a {"aliquot_tag": "ALQ_6d25437e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.WGS.A C3N-00242 CCRCC WGS tissue_normal CPT0014470009 CPT0014470009.WholeGenome.RP-1303.bam 67297555501 BAM submitted_aligned CPTAC3 3fb31b8e-27ff-4ac5-b468-ee42a26bfd72 59775f284fe11a5ae7973bae1b68b1e4 {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.WGS.A.hg38 C3N-00242 CCRCC WGS tissue_normal CPT0014470009 102fd8bb-dc9a-455e-8d18-c30cb516eb40_wgs_gdc_realn.bam 100104053451 BAM harmonized CPTAC3 0f0c1da6-6049-4940-aa0c-ccb8d0814a18 cafaa61c4470d2fecf24aca811b32b28 {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.WGS.N C3N-00242 CCRCC WGS blood_normal CPT0015070002 CPT0015070002.WholeGenome.RP-1303.bam 68365568096 BAM submitted_aligned CPTAC3 384baaa8-9a44-4d08-b6ef-682b60126697 c0ef3a20c71c9b949aa7f0a5f05e5b8c {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00242.WGS.N.hg38 C3N-00242 CCRCC WGS blood_normal CPT0015070002 de313b5e-16b5-4b77-976e-d9b2b4887841_gdc_realn.bam 99680407397 BAM harmonized CPTAC3 a5524921-f50e-45d5-abb3-fabd80fe8750 7b3143b476c1c73e2e6ab154aca37c6b {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00242.WGS.T C3N-00242 CCRCC WGS tumor CPT0014450007 CPT0014450007.WholeGenome.RP-1303.bam 67990304863 BAM submitted_aligned CPTAC3 f56e72c9-8729-450f-80a5-6942785eba20 3a0dc0e84316fed10fd35e77ed7ffa9d {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.WGS.T.hg38 C3N-00242 CCRCC WGS tumor CPT0014450007 0d1f1c1c-3dcc-4f40-beaf-259e581f054f_gdc_realn.bam 98657569623 BAM harmonized CPTAC3 a42575bd-7765-4ade-a67b-ed630f9d083f 82bcab4eb5b6bcb14ea93f03ba192fd4 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.WXS.A C3N-00242 CCRCC WXS tissue_normal CPT0014470009 CPT0014470009.WholeExome.RP-1303.bam 31924423409 BAM submitted_aligned CPTAC3 d95524a5-01cf-4679-9396-7f4cf7f4570a a330d1f4ee743034964a2fb3566f018b {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.WXS.A.hg38 C3N-00242 CCRCC WXS tissue_normal CPT0014470009 102fd8bb-dc9a-455e-8d18-c30cb516eb40_wxs_gdc_realn.bam 43171608515 BAM harmonized CPTAC3 0d35b682-2119-4255-9206-0cd28c697ae5 b8b5c4d02ef1b0f7b9b315ac52ba2598 {"aliquot_tag": "ALQ_704f5de2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00242.WXS.N C3N-00242 CCRCC WXS blood_normal CPT0015070002 CPT0015070002.WholeExome.RP-1303.bam 24359257270 BAM submitted_aligned CPTAC3 b13bd46d-9dcb-42de-9c10-022ddbe516d2 e23452a94b799b81ee2922977b9b96a3 {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00242.WXS.N.hg38 C3N-00242 CCRCC WXS blood_normal CPT0015070002 de313b5e-16b5-4b77-976e-d9b2b4887841_gdc_realn.bam 33330691662 BAM harmonized CPTAC3 66cfb46b-a100-4325-ab44-1114af0652d7 cb283f28887ee25f85e02edd9fb48910 {"aliquot_tag": "ALQ_da7bcdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00242.WXS.T C3N-00242 CCRCC WXS tumor CPT0014450007 CPT0014450007.WholeExome.RP-1303.bam 23904245033 BAM submitted_aligned CPTAC3 c00ec472-327d-4391-abf1-16d39a34b8b4 dce06b9405528af5b558ecbcd4df025b {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00242.WXS.T.hg38 C3N-00242 CCRCC WXS tumor CPT0014450007 0d1f1c1c-3dcc-4f40-beaf-259e581f054f_gdc_realn.bam 32755340355 BAM harmonized CPTAC3 f0bb4cae-e08e-4d23-b370-ecbb219d1dfc 1c3cc50ec9a2c189931fa2d8a6300a50 {"aliquot_tag": "ALQ_ed372385", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00243.MethArray.Green.A C3N-00243 CCRCC Methylation_Array tissue_normal CPT0025470006 205555380179_R05C01_Grn.idat 13677960 IDAT Green NA CPTAC3 45e897db-a0ff-4afa-b690-e7daa6e2f28c 87ce9db52021382ced2a1223d41126ea {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.MethArray.Green.T C3N-00243 CCRCC Methylation_Array tumor CPT0025450009 205549610123_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 cf1bb41c-7ca1-41be-82b8-26ef2e98e3b1 ea53a0116c0c81c30613b932dd383a1e {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.MethArray.Red.A C3N-00243 CCRCC Methylation_Array tissue_normal CPT0025470006 205555380179_R05C01_Red.idat 13677960 IDAT Red NA CPTAC3 1eb0cc04-7498-49e8-ab32-989c524721dd 8fa17f879e03cb32251e419740de60f3 {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.MethArray.Red.T C3N-00243 CCRCC Methylation_Array tumor CPT0025450009 205549610123_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 82f547f1-a989-49fc-ae6e-1180d600a38f b8b7e2fa38443bbbc0a0b2775691007f {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.miRNA-Seq.A.hg38 C3N-00243 CCRCC miRNA-Seq tissue_normal CPT0025470009 8ff198f4-2288-4a1e-81c9-2ffc92fdeb49_mirnaseq_gdc_realn.bam 293557477 BAM harmonized CPTAC3 798417f5-b4b5-4a12-9013-71a29a709208 0130106b04a5f38d5a29cda8b0470681 {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.miRNA-Seq.S36_L003_R1.T C3N-00243 CCRCC miRNA-Seq tumor CPT0025450011 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCCCGA_S36_L003_R1_001.unaln.bam 244420160 BAM S36_L003_R1 submitted_unaligned CPTAC3 dc77754a-ef6b-46f9-ba1d-12855d3565b4 17105b2a9a43db37e80e87dbefe24cc3 {"aliquot_tag": "ALQ_35b7bba6", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.miRNA-Seq.S38_L002_R1.A C3N-00243 CCRCC miRNA-Seq tissue_normal CPT0025470009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGGCA_S38_L002_R1_001.unaln.bam 272253379 BAM S38_L002_R1 submitted_unaligned CPTAC3 e9a50664-2c3e-4d05-b424-c097ec203544 4a716be7df36d25ec39349d037cdd7af {"aliquot_tag": "ALQ_58b751b5", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.miRNA-Seq.T.hg38 C3N-00243 CCRCC miRNA-Seq tumor CPT0025450011 d28374fb-757b-4d35-9c6d-56994655fe87_mirnaseq_gdc_realn.bam 257647490 BAM harmonized CPTAC3 de112439-7a1b-4d33-aa31-21700e86bc56 481695f9ee91400f11b0a73ba56cbcf6 {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.RNA-Seq.chimeric.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.chimeric.gdc_realn.bam 195854409 BAM chimeric harmonized CPTAC3 ee3c91e6-b013-417a-bd3a-bde7ee9764a3 13ca687f9c548132639bd14e7c2867c7 {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.RNA-Seq.chimeric.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.chimeric.gdc_realn.bam 291023075 BAM chimeric harmonized CPTAC3 ecbe35ee-d651-41ce-a8bb-db1f625e75b2 059b62158b9f57744180323aaaac818d {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.RNA-Seq.genomic.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.genomic.gdc_realn.bam 8824786855 BAM genomic harmonized CPTAC3 95b7c4d3-4716-4d42-9b48-7747bb5382da 5df9cac416ed711701b930ffd4fecd62 {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.RNA-Seq.genomic.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.genomic.gdc_realn.bam 10016903043 BAM genomic harmonized CPTAC3 fb12f71d-6e87-4938-8500-18f7c2210aa4 95d3c25133eb295238773da1ec240438 {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.RNA-Seq.S13_L004_R1.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R1_001.fastq.gz 4807995996 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 7ce66ed4-6d18-4200-93fe-dff02c0346be 74c6dcb5cd8b4953e097aef2b42e13c8 {"aliquot_tag": "ALQ_35b7bba6", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.RNA-Seq.S13_L004_R2.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R2_001.fastq.gz 5420245351 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 fa6b449a-3faf-41c2-84e4-787f4d198935 8d8f2507da020b97af89472d41496212 {"aliquot_tag": "ALQ_35b7bba6", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.RNA-Seq.S18_L006_R1.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R1_001.fastq.gz 4067950812 FASTQ S18_L006_R1 submitted_unaligned CPTAC3 f0085fcc-00ef-4eec-a502-59604bb40dbd 6f992f0d3dac5be4d62f06ec239bf98a {"aliquot_tag": "ALQ_58b751b5", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.RNA-Seq.S18_L006_R2.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R2_001.fastq.gz 4661631472 FASTQ S18_L006_R2 submitted_unaligned CPTAC3 d3f055d2-0497-4669-8214-a0064deab02b 918da60c98a2e17f8af0f396c57f5221 {"aliquot_tag": "ALQ_58b751b5", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.RNA-Seq.transcriptome.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.transcriptome.gdc_realn.bam 12511450432 BAM transcriptome harmonized CPTAC3 31e443e2-a424-4fe5-8c63-ad85a72457cd 7dfcc7f7be342b9a9a5e87140869d36f {"aliquot_tag": "ALQ_58b751b5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.RNA-Seq.transcriptome.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.transcriptome.gdc_realn.bam 11198685277 BAM transcriptome harmonized CPTAC3 5f2e67c9-ca67-4d49-87a9-53b419697a47 aca724cfdc43293c3614c92954a49b03 {"aliquot_tag": "ALQ_35b7bba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.WGS.N C3N-00243 CCRCC WGS blood_normal CPT0028430002 CPT0028430002.WholeGenome.RP-2158.bam 21127475254 BAM submitted_aligned CPTAC3 1015a225-c765-42dc-9e16-3652d6ce1393 ae024e1d4a699f4aeba3ae8b8ca2f3d4 {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00243.WGS.N.hg38 C3N-00243 CCRCC WGS blood_normal CPT0028430002 8af781f0-72e5-454a-afd7-466bec03c5f6_wgs_gdc_realn.bam 61282039234 BAM harmonized CPTAC3 949f29bb-92e9-48d6-93e0-3bcf6aad01d5 9d94b20d1940500bee2de09e3120e425 {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00243.WGS.T C3N-00243 CCRCC WGS tumor CPT0025450009 CPT0025450009.WholeGenome.RP-2158.bam 38694686455 BAM submitted_aligned CPTAC3 6d53f3b8-0635-42e7-b9ae-af71e22c5be8 452d7fdb6d64bcd57c54c9790cf9ed25 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.WGS.T.hg38 C3N-00243 CCRCC WGS tumor CPT0025450009 5eaf0c1f-f5af-4b20-9a9f-683557da5637_wgs_gdc_realn.bam 115108104904 BAM harmonized CPTAC3 37e56cba-4000-4966-adbf-e5bad6b4f744 ff128cbb9ae899e3b8c1ad6c4df53b35 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.WXS.A C3N-00243 CCRCC WXS tissue_normal CPT0025470006 CPT0025470006.WholeExome.RP-1303.bam 22744188372 BAM submitted_aligned CPTAC3 1911670a-03c7-4e35-89fd-fde5c53f903a 2aedf99d1bb471a39fba19c1ce9f7de2 {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00243.WXS.A.hg38 C3N-00243 CCRCC WXS tissue_normal CPT0025470006 e6ab0934-5cd2-4712-82c5-e41b42791290_wxs_gdc_realn.bam 30896743669 BAM harmonized CPTAC3 d31d2ac4-e74b-4787-addd-8c2f87ab43df 74929cfc315f95ad3ea3dd698ec8cab4 {"aliquot_tag": "ALQ_c8084c24", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-00243.WXS.N C3N-00243 CCRCC WXS blood_normal CPT0028430002 CPT0028430002.WholeExome.RP-1303.bam 26737805445 BAM submitted_aligned CPTAC3 3619408e-fbd6-4b28-bf60-4813e5dc7bc5 7206b2e40c656e4ba2175890ec825c18 {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00243.WXS.N.hg38 C3N-00243 CCRCC WXS blood_normal CPT0028430002 8af781f0-72e5-454a-afd7-466bec03c5f6_wxs_gdc_realn.bam 36685146038 BAM harmonized CPTAC3 24bf316e-db34-46de-9c49-5bb4c158d28c 18292db8b2c6d1a503f3c87b025f7f4f {"aliquot_tag": "ALQ_5b324f3d", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-00243.WXS.T C3N-00243 CCRCC WXS tumor CPT0025450009 CPT0025450009.WholeExome.RP-1303.bam 27963680990 BAM submitted_aligned CPTAC3 3d249169-10e9-4c39-a2e0-1ccdcbf818c3 1f43d80eea307c228dc0afc0ff924cc2 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00243.WXS.T.hg38 C3N-00243 CCRCC WXS tumor CPT0025450009 5eaf0c1f-f5af-4b20-9a9f-683557da5637_wxs_gdc_realn.bam 38825972232 BAM harmonized CPTAC3 14abb094-d424-4ed3-83ea-dcf17e9a9d26 8c8ab8991a640f7ef43211babacf4586 {"aliquot_tag": "ALQ_227702d5", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00244.MethArray.Green.A C3N-00244 CCRCC Methylation_Array tissue_normal CPT0014350009 204930640051_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4c49a678-9919-4da3-9610-36e84ab217f4 ab8da2ca35e460458483ca97d7298a5c {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.MethArray.Green.T C3N-00244 CCRCC Methylation_Array tumor CPT0014370007 202184900127_R01C01_Grn.idat 13676250 IDAT Green NA CPTAC3 acaa6822-0374-4168-adbb-e1c1469be57c 970c07929221e3b59eded06d624978da {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.MethArray.Red.A C3N-00244 CCRCC Methylation_Array tissue_normal CPT0014350009 204930640051_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 569d9f93-a955-4370-9a09-7d354da6f95b c006fd3d9dec76354e72d01a6121311f {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.MethArray.Red.T C3N-00244 CCRCC Methylation_Array tumor CPT0014370007 202184900127_R01C01_Red.idat 13676250 IDAT Red NA CPTAC3 71336bb5-0864-4e26-a7f0-002a7a0c2042 9cddd1c5dc34cc663e606d2358d04ae0 {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.miRNA-Seq.A.hg38 C3N-00244 CCRCC miRNA-Seq tissue_normal CPT0014350006 1f1a7087-1990-4713-8fa7-6ad260eae8f1_mirnaseq_gdc_realn.bam 205648181 BAM harmonized CPTAC3 0a9fe2fe-f328-4cf1-b981-c2f08cd77def b0441db43c73fda725995e2b3a4093b2 {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.miRNA-Seq.S33_L004_R1.A C3N-00244 CCRCC miRNA-Seq tissue_normal CPT0014350006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGGCG_S33_L004_R1_001.unaln.bam 186566670 BAM S33_L004_R1 submitted_unaligned CPTAC3 b0342817-9666-460f-af47-484b3f92b59f d221d429cb707bbc24b54d06ff486a94 {"aliquot_tag": "ALQ_873523ab", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.miRNA-Seq.S39_L004_R1.T C3N-00244 CCRCC miRNA-Seq tumor CPT0014370010 181113_UNC31-K00269_0164_AH23NNBBXY_ATGTCA_S39_L004_R1_001.unaln.bam 216510545 BAM S39_L004_R1 submitted_unaligned CPTAC3 d39a0e69-eba7-437a-8252-69dc001b1d7c 1059214564cebe3ed726993174ba99a3 {"aliquot_tag": "ALQ_d8de4bf", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.miRNA-Seq.T.hg38 C3N-00244 CCRCC miRNA-Seq tumor CPT0014370010 cc99b8a5-66f1-4ac4-a902-9a6a17977941_mirnaseq_gdc_realn.bam 236636416 BAM harmonized CPTAC3 0f3d7a1b-45e2-436a-ad0c-a7a15230b762 9f4306b6088c31c99b2a4c8e3e2307dc {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.RNA-Seq.chimeric.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.chimeric.gdc_realn.bam 81436318 BAM chimeric harmonized CPTAC3 1ca50c2c-03f2-40eb-8dc5-26bd0c8131e1 3f805c0af4101327042950ce1cef2c33 {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.RNA-Seq.chimeric.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.chimeric.gdc_realn.bam 82959984 BAM chimeric harmonized CPTAC3 864aa86e-7a46-45db-ab36-82995dd93a13 d01e4afdd9aa101e0c0e7570413174e7 {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.RNA-Seq.genomic.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.genomic.gdc_realn.bam 9525860464 BAM genomic harmonized CPTAC3 2440691d-113a-4192-bfe4-b1545a9b80de 94dcea3a077d3acc0e3f0e5a48297688 {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.RNA-Seq.genomic.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.genomic.gdc_realn.bam 6797456944 BAM genomic harmonized CPTAC3 11d6b30f-d870-4f3c-b04d-a84c3717b2ef 7db5fcbe39e973543fc4ad0957777798 {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.RNA-Seq.S20_L007_R1.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R1_001.fastq.gz 3506612417 FASTQ S20_L007_R1 submitted_unaligned CPTAC3 9eac52d5-7b2c-4f12-8710-c3698b38b316 d60c1d076d5d8eacf8d65256bf5e204d {"aliquot_tag": "ALQ_d8de4bf", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.RNA-Seq.S20_L007_R2.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R2_001.fastq.gz 3780716196 FASTQ S20_L007_R2 submitted_unaligned CPTAC3 5d53b49e-4a14-46ee-96eb-bd0c21284c72 aa08fa8f3ade1c3e9085d85ca6616ca6 {"aliquot_tag": "ALQ_d8de4bf", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.RNA-Seq.S52_L006_R1.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R1_001.fastq.gz 4473154983 FASTQ S52_L006_R1 submitted_unaligned CPTAC3 ac55d6b5-d21e-4f30-bb31-a2c1b1fe3b85 7cb7cc4c1b5e61cac82ef4bd389ea51a {"aliquot_tag": "ALQ_873523ab", "sample": "S52", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.RNA-Seq.S52_L006_R2.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R2_001.fastq.gz 4767352929 FASTQ S52_L006_R2 submitted_unaligned CPTAC3 9405a470-4eaf-4991-b093-f7f8761a5d5f 329850d14a522032d47f95cab49071d3 {"aliquot_tag": "ALQ_873523ab", "sample": "S52", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.RNA-Seq.transcriptome.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.transcriptome.gdc_realn.bam 10887603401 BAM transcriptome harmonized CPTAC3 ae4a8f1f-401e-41fd-a6ab-6290b9d589cb dd8ee8aa14f721a35ac1d25bf28922fb {"aliquot_tag": "ALQ_873523ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.RNA-Seq.transcriptome.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.transcriptome.gdc_realn.bam 10222792345 BAM transcriptome harmonized CPTAC3 e48ff784-c4b9-4252-9393-933b1a3443a4 1c304cc4d05b3d7c2736541d056eb4a9 {"aliquot_tag": "ALQ_d8de4bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.WGS.A C3N-00244 CCRCC WGS tissue_normal CPT0014350009 CPT0014350009.WholeGenome.RP-1303.bam 69390189134 BAM submitted_aligned CPTAC3 678065a8-d1b5-4efe-b1cd-6ecb2a5fd99b 7e3c8c4a5f9bcdeac160faaa19d6737e {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.WGS.A.hg38 C3N-00244 CCRCC WGS tissue_normal CPT0014350009 f1bd88b9-899a-4812-b52f-7a3ff82e781e_wgs_gdc_realn.bam 101451681101 BAM harmonized CPTAC3 aa562348-0ded-4d2d-8690-d9163db1a6dc 08b003dfaa6340218acb19f35c41b3dc {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.WGS.N C3N-00244 CCRCC WGS blood_normal CPT0015060002 CPT0015060002.WholeGenome.RP-1303.bam 55519574884 BAM submitted_aligned CPTAC3 7ce686a2-7c03-40d0-bcf1-c0d714d0181b 0f9209d6102b85689ae56b49d812a4ba {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00244.WGS.N.hg38 C3N-00244 CCRCC WGS blood_normal CPT0015060002 46e9d690-9bb2-4e23-8dcc-b7475943743c_gdc_realn.bam 80741189355 BAM harmonized CPTAC3 106202b4-0be9-4da8-a330-5d0cc4c66027 b786f0baff670736b77d3dccb9a203a5 {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00244.WGS.T C3N-00244 CCRCC WGS tumor CPT0014370007 CPT0014370007.WholeGenome.RP-1303.bam 72981691793 BAM submitted_aligned CPTAC3 0b988836-7c8d-44fb-97b8-40fca620aab5 d09888da90779237bcbded482a7dbe48 {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.WGS.T.hg38 C3N-00244 CCRCC WGS tumor CPT0014370007 0e504ad9-bd5a-4c37-8996-66032855966d_gdc_realn.bam 108997975791 BAM harmonized CPTAC3 63367d7f-c123-41de-82d0-449663286b8a f6dbcfc96e25011834e4d7bb2d9cee5d {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.WXS.A C3N-00244 CCRCC WXS tissue_normal CPT0014350009 CPT0014350009.WholeExome.RP-1303.bam 46991375452 BAM submitted_aligned CPTAC3 4205bfed-8cd5-4b26-bc4d-691045321e31 6ee203c7b984a5755a52a0c41f574328 {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.WXS.A.hg38 C3N-00244 CCRCC WXS tissue_normal CPT0014350009 f1bd88b9-899a-4812-b52f-7a3ff82e781e_wxs_gdc_realn.bam 63859637376 BAM harmonized CPTAC3 7e4aac4e-5147-413f-865f-57a9e11e0703 0240252b6fbb122a84223cf759311853 {"aliquot_tag": "ALQ_178a3e3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00244.WXS.N C3N-00244 CCRCC WXS blood_normal CPT0015060002 CPT0015060002.WholeExome.RP-1303.bam 24338139237 BAM submitted_aligned CPTAC3 8580540d-743c-45b6-a315-f3cf13988361 b3cf9c821974d55b637c6464820a7ac2 {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00244.WXS.N.hg38 C3N-00244 CCRCC WXS blood_normal CPT0015060002 46e9d690-9bb2-4e23-8dcc-b7475943743c_gdc_realn.bam 33023503528 BAM harmonized CPTAC3 305ac725-4d71-4b6b-87a9-1033ac5ae664 1156ab474643d136c649a648853f6f48 {"aliquot_tag": "ALQ_e71be478", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00244.WXS.T C3N-00244 CCRCC WXS tumor CPT0014370007 CPT0014370007.WholeExome.RP-1303.bam 26590798868 BAM submitted_aligned CPTAC3 ed2a9f39-52ee-4dd6-ae62-097405443b5a ad58f10f408d3bf8c0b1cb30359ec68c {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00244.WXS.T.hg38 C3N-00244 CCRCC WXS tumor CPT0014370007 0e504ad9-bd5a-4c37-8996-66032855966d_gdc_realn.bam 36427791748 BAM harmonized CPTAC3 734e4595-5abd-4739-8fbe-0b877b1b62c3 963227a446e6e2957f8cee841592aaf5 {"aliquot_tag": "ALQ_8af2405d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.MethArray.Green.T C3N-00246 CCRCC Methylation_Array tumor CPT0025580010 202184990059_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9f3a6c62-ded6-4c99-969e-169d7ab388c8 a3cced98a55b84392d23832c392d2b0b {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.MethArray.Red.T C3N-00246 CCRCC Methylation_Array tumor CPT0025580010 202184990059_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 7038dc6b-7fbe-4fc4-8b69-18f16bd18ac0 6414583f0d40a8bfb9f9de04f0d6754d {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.miRNA-Seq.S14_L001_R1.T C3N-00246 CCRCC miRNA-Seq tumor CPT0025580007 180924_UNC31-K00269_0154_AHWTMLBBXX_GTAGAG_S14_L001_R1_001.unaln.bam 206170912 BAM S14_L001_R1 submitted_unaligned CPTAC3 05738917-2681-4178-8f6f-c6260079ffb5 8031eaf9e5264a42822bc24d12388aa9 {"aliquot_tag": "ALQ_f60338c6", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.miRNA-Seq.T.hg38 C3N-00246 CCRCC miRNA-Seq tumor CPT0025580007 2f30225a-252c-49a4-bfab-795419b17144_mirnaseq_gdc_realn.bam 226551421 BAM harmonized CPTAC3 1be2e2ba-84b7-46db-a02c-1b7fbd9989a0 a462d01d1128ac85e5be19e83e8a2514 {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.RNA-Seq.chimeric.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.chimeric.gdc_realn.bam 91790578 BAM chimeric harmonized CPTAC3 7a9d56e1-58af-4770-966c-9e5c2bab5d94 6f23a46010663120372fbc98e1e86a2e {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.RNA-Seq.genomic.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.genomic.gdc_realn.bam 8330219152 BAM genomic harmonized CPTAC3 f60201dc-bde3-43a2-9648-a49a58637e83 c563d0870cb61e0b875c858b37a20f41 {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.RNA-Seq.S5_L002_R1.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4176841992 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 b2f5270b-e884-473e-bebb-fd293a7abe03 19fee323e47e03ac83da8ab1ba01fa48 {"aliquot_tag": "ALQ_f60338c6", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.RNA-Seq.S5_L002_R2.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4639218644 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 6c6faf26-b644-4903-8866-4153d141fead cdb7df58e4af7672c105bc74e78c5f1e {"aliquot_tag": "ALQ_f60338c6", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.RNA-Seq.transcriptome.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.transcriptome.gdc_realn.bam 11462655998 BAM transcriptome harmonized CPTAC3 30fb10d1-5c0d-471f-989a-be71d286541f 1efe4c25980617ee0f7a9aa556ffdc0a {"aliquot_tag": "ALQ_f60338c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.WGS.N C3N-00246 CCRCC WGS blood_normal CPT0028450002 CPT0028450002.WholeGenome.RP-1303.bam 96839343963 BAM submitted_aligned CPTAC3 8a6339e1-e955-4f95-bf80-e4ab6086c165 2dd4508e37664e03ee2678414a843cb4 {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00246.WGS.N.hg38 C3N-00246 CCRCC WGS blood_normal CPT0028450002 ec639b94-a29e-46b7-9b59-cf6dd07504c8_gdc_realn.bam 141378006084 BAM harmonized CPTAC3 5c9b3fd4-a694-4304-a7a6-0e84d4fa373e dac953abd8031b164214f863ce4454d7 {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00246.WGS.T C3N-00246 CCRCC WGS tumor CPT0025580010 CPT0025580010.WholeGenome.RP-1303.bam 69359408190 BAM submitted_aligned CPTAC3 815cc304-239b-4f19-89bd-56d5e28a74be 30e5f575a35113e5694c51257c3cd74b {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.WGS.T.hg38 C3N-00246 CCRCC WGS tumor CPT0025580010 0c549f20-30eb-4517-b94a-116c0f1e6755_gdc_realn.bam 101429143329 BAM harmonized CPTAC3 2169708d-9ece-40d3-a19d-8ad0b1345e10 432a25b549920ca4efb76389a5edba05 {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.WXS.N C3N-00246 CCRCC WXS blood_normal CPT0028450002 CPT0028450002.WholeExome.RP-1303.bam 23424780952 BAM submitted_aligned CPTAC3 804fdc69-da5b-41ba-984b-37f4aee66f7f 5a2eb511f7869bd732b14536706e7bbe {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00246.WXS.N.hg38 C3N-00246 CCRCC WXS blood_normal CPT0028450002 ec639b94-a29e-46b7-9b59-cf6dd07504c8_gdc_realn.bam 32179635876 BAM harmonized CPTAC3 717121ec-6899-4fde-a634-1a6727a9c246 baba24d9a8cca8f34802b418d71dee4b {"aliquot_tag": "ALQ_d472ba9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00246.WXS.T C3N-00246 CCRCC WXS tumor CPT0025580010 CPT0025580010.WholeExome.RP-1303.bam 32900126616 BAM submitted_aligned CPTAC3 c16461f9-c414-471b-abf3-54b4b9d0acfa c9db4ac90d43f3824a99622974b049e3 {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00246.WXS.T.hg38 C3N-00246 CCRCC WXS tumor CPT0025580010 0c549f20-30eb-4517-b94a-116c0f1e6755_gdc_realn.bam 44838721504 BAM harmonized CPTAC3 0cca9017-b591-4699-b5a9-91ddc6ed5127 2d6c3a0444522209c8cc2865fb491b6a {"aliquot_tag": "ALQ_717c9c24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.MethArray.Green.T C3N-00247 LSCC Methylation_Array tumor CPT0089880009 202234360028_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a8718ff9-c8a2-4c33-89b1-0347864e8494 d2f52b6011b101308081c16acacbf459 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.MethArray.Red.T C3N-00247 LSCC Methylation_Array tumor CPT0089880009 202234360028_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 2ec62635-d694-4bb4-bd6a-6eb71156d916 33342028512e9842c4896ce9083a2a55 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.miRNA-Seq.S22_L006_R1.T C3N-00247 LSCC miRNA-Seq tumor CPT0089880006 180828_UNC32-K00270_0112_AHWTLNBBXX_CGATGT_S22_L006_R1_001.unaln.bam 245736563 BAM S22_L006_R1 submitted_unaligned CPTAC3 3d2fd5d4-1621-4dbd-9302-0c1141616559 b57ce5e3edbff08049e163be48f6a8ee {"aliquot_tag": "ALQ_6bfa6d32", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.miRNA-Seq.T.hg38 C3N-00247 LSCC miRNA-Seq tumor CPT0089880006 22061a48-0c26-47f0-84fa-2b885d820d5e_mirnaseq_gdc_realn.bam 275198600 BAM harmonized CPTAC3 d5e744a5-0b82-478a-adbf-77d9f8f75baa 2be369af4c9a75201b26850caead122d {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.RNA-Seq.chimeric.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.chimeric.gdc_realn.bam 34464699 BAM chimeric harmonized CPTAC3 3ec97893-eeea-4bb2-afb4-ba66453c1413 62c099ab8ab3a73c31e1e5e75a34955e {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.RNA-Seq.genomic.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.genomic.gdc_realn.bam 10880454866 BAM genomic harmonized CPTAC3 4655fbfb-30da-4068-b059-a9ee5a3f70b0 d00c72dee855f231668b2758bb3de6c4 {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.RNA-Seq.S6_L002_R1.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4417867260 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 93f35b19-4f58-4809-b52d-8be64c0beb5e 54469884efed6ccd09a529f93cd13595 {"aliquot_tag": "ALQ_6bfa6d32", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.RNA-Seq.S6_L002_R2.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4747219538 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 33c91fa1-de4a-4bb9-9071-fc89e343ac1b db0d5b35cce72a901bce98370ecfc56f {"aliquot_tag": "ALQ_6bfa6d32", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.RNA-Seq.transcriptome.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.transcriptome.gdc_realn.bam 11070320028 BAM transcriptome harmonized CPTAC3 e94d2871-fab7-47d2-9d57-9ef7c4bebea8 ff1c5aca318e89d585ec7aae01b78e31 {"aliquot_tag": "ALQ_6bfa6d32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.WGS.N C3N-00247 LSCC WGS blood_normal CPT0091400002 CPT0091400002.WholeGenome.RP-1303.bam 61758632552 BAM submitted_aligned CPTAC3 7c44725b-4fe8-4f7e-91a6-2fcda7105bc9 3052c8cd4a9c6c264333bacb0ffa3d31 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00247.WGS.N.hg38 C3N-00247 LSCC WGS blood_normal CPT0091400002 864d0707-63aa-439f-8fcc-cbe77d2235bb_wgs_gdc_realn.bam 89697207318 BAM harmonized CPTAC3 53d1890c-8b29-487f-a73a-5bf0c6ef901d 81a58dca1676b2ceddb3385122b92544 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00247.WGS.T C3N-00247 LSCC WGS tumor CPT0089880009 CPT0089880009.WholeGenome.RP-1303.bam 57844872128 BAM submitted_aligned CPTAC3 eb72c4e4-e0fd-4aa8-971b-840536d762d3 6198d934edc1b8d814b15986ab1582f9 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.WGS.T.hg38 C3N-00247 LSCC WGS tumor CPT0089880009 d8775fea-842f-49cd-a59c-e95128566a32_wgs_gdc_realn.bam 84772160370 BAM harmonized CPTAC3 fe418d3f-6a3b-468d-979a-bd4a4a941546 49dce3017be616fd584c4aa83f66e10f {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.WXS.N C3N-00247 LSCC WXS blood_normal CPT0091400002 CPT0091400002.WholeExome.RP-1303.bam 32659493290 BAM submitted_aligned CPTAC3 d8859eaa-d9f9-47a1-a3c7-ee21cba63c07 5a69e92a87391f243d1b0efdc436c025 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00247.WXS.N.hg38 C3N-00247 LSCC WXS blood_normal CPT0091400002 864d0707-63aa-439f-8fcc-cbe77d2235bb_wxs_gdc_realn.bam 43988430123 BAM harmonized CPTAC3 c13e3765-ba34-45be-ad45-8761f8668d93 cf610db3505efdcd90d209979f9efe51 {"aliquot_tag": "ALQ_d4606c68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00247.WXS.T C3N-00247 LSCC WXS tumor CPT0089880009 CPT0089880009.WholeExome.RP-1303.bam 34798795077 BAM submitted_aligned CPTAC3 d08e9bd0-9c41-4f0f-823b-e52caaaa69da 0f5c8a5c50abe4b976e01609a6a311a2 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00247.WXS.T.hg38 C3N-00247 LSCC WXS tumor CPT0089880009 d8775fea-842f-49cd-a59c-e95128566a32_wxs_gdc_realn.bam 46450438706 BAM harmonized CPTAC3 65e5941b-b9fc-4c60-bb22-61730bf216fa 20fe6cb51f360f2af429cb4049e3ba04 {"aliquot_tag": "ALQ_fb4570a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.ADD_a4e3707b.MethArray.Green.T C3N-00249 PDA Methylation_Array tumor CPT0025750009 202176300001_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e95862d8-e689-4f6a-94c8-3ba08946ff88 8f7c3fe279cb689237a81bdc2cb7afae {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.ADD_a4e3707b.MethArray.Red.T C3N-00249 PDA Methylation_Array tumor CPT0025750009 202176300001_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 ea453dcc-542b-46f0-a943-d6673ebcd047 0fbaa01e0f4b8ff60dd95474ff3e3e70 {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.ADD_a4e3707b.WGS.T C3N-00249 PDA WGS tumor CPT0025750009 CPT0025750009.WholeGenome.RP-1303.bam 64051533577 BAM submitted_aligned CPTAC3 4610bba5-9c31-4bd5-88a3-7ffcbf578b8d 9e9b3a42f0052a04d7e34336c0934a4e {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.ADD_a4e3707b.WGS.T.hg38 C3N-00249 PDA WGS tumor CPT0025750009 4fc51e70-9dc7-4a0f-af5b-f45bbbaa9292_gdc_realn.bam 94969894851 BAM harmonized CPTAC3 e6177b15-f150-4565-88e8-f26bb0e6e33a e4e17166e04b38fd4fe39d9c984c0a34 {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.ADD_a4e3707b.WXS.T C3N-00249 PDA WXS tumor CPT0025750009 CPT0025750009.WholeExome.RP-1303.bam 24358776304 BAM submitted_aligned CPTAC3 68ab025a-49f8-402e-927d-bb1bfda16f4c 8b1bfb6d51427e62ef7d8bbfaacfc4ae {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.ADD_a4e3707b.WXS.T.hg38 C3N-00249 PDA WXS tumor CPT0025750009 4fc51e70-9dc7-4a0f-af5b-f45bbbaa9292_gdc_realn.bam 33380327861 BAM harmonized CPTAC3 130c5bb4-e44a-497f-89eb-a95af0ccbc71 63c66cdb00f184b481ebf7678ac04274 {"aliquot_tag": "ADD_a4e3707b", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.MethArray.Green.A C3N-00249 PDA Methylation_Array tissue_normal CPT0025760006 203561450014_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0decb80a-8d2c-43b8-99b9-c53591984f7a c44a7a4916826031c6147940e62c80b1 {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00249.MethArray.Red.A C3N-00249 PDA Methylation_Array tissue_normal CPT0025760006 203561450014_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 0a627e8e-b19b-4cd6-b8f1-bc6ee7254cdd 03b03c71b945ebc7fdfbfbd1e685af2a {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00249.miRNA-Seq.S13_L001_R1.T C3N-00249 PDA miRNA-Seq tumor CPT0025750006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTCCGC_S13_L001_R1_001.unaln.bam 235376558 BAM S13_L001_R1 submitted_unaligned CPTAC3 ef93cf21-8cc6-41ad-a7d6-ecc4466c3c3f c21deef9ae25d8c8e52a4a1663b52e40 {"aliquot_tag": "ALQ_345c6dea", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.miRNA-Seq.T.hg38 C3N-00249 PDA miRNA-Seq tumor CPT0025750006 c39fb7e7-f6f6-4d87-a064-e8aedde885cb_mirnaseq_gdc_realn.bam 257255576 BAM harmonized CPTAC3 c97c42bc-a767-4336-8cf3-466491f10cbb 63743813547fc5336334aad07db9d685 {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.RNA-Seq.chimeric.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.chimeric.gdc_realn.bam 65054376 BAM chimeric harmonized CPTAC3 c64603bb-b025-4b21-add1-88ac4da445dc 236258c815602c16c8ca167c73deab3c {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.genomic.gdc_realn.bam 8811542154 BAM genomic harmonized CPTAC3 3e04bab8-c966-4f0d-9cae-c11969a94c07 6bc7be89b0cdbeeb11daec6f125db32e {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.RNA-Seq.S6_L002_R1.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3904396163 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 610773b7-6a19-49c2-8b12-bb58d27184b3 5085cd9d8e2d1d9cce7cffe1f7336a6e {"aliquot_tag": "ALQ_345c6dea", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.RNA-Seq.S6_L002_R2.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4385829043 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 5853ca64-9b14-49cb-9c49-18595e36626f 129cc9a23bcf1f55bae991e3a9e85e8e {"aliquot_tag": "ALQ_345c6dea", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.RNA-Seq.transcriptome.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.transcriptome.gdc_realn.bam 11054554153 BAM transcriptome harmonized CPTAC3 cbcf2ea6-d930-48e0-bde0-89030af1ad37 b1c94383af6bb02e34892c50747671e8 {"aliquot_tag": "ALQ_345c6dea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.Targeted.T C3N-00249 PDA Targeted_Sequencing tumor CPT0025750009_1 CPT0025750009_1.CustomSelection.RP-1303.PDO-18786.bam 4427050184 BAM submitted_aligned CPTAC3 a57a8577-1997-4e79-91b1-50836db5dd22 1670883dea0628ef854c38d499517bf2 {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.Targeted.T.hg38 C3N-00249 PDA Targeted_Sequencing tumor CPT0025750009_1 d54a354f-a303-4689-9f1b-fba719fd79ef_targetedsequencing_gdc_realn.bam 6191598262 BAM harmonized CPTAC3 5b20eb74-ebc1-4234-a739-4a8ddb97a8c5 c6072636f1508fb450c63f9a238dfa78 {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.WGS.A C3N-00249 PDA WGS tissue_normal CPT0025760006 CPT0025760006.WholeGenome.RP-1303.bam 57991657468 BAM submitted_aligned CPTAC3 a40034de-9b4c-4418-a218-d2613df25a5c 47b81a46b38ab0da7a53bedd3fe1da4c {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00249.WGS.A.hg38 C3N-00249 PDA WGS tissue_normal CPT0025760006 06e41ea8-02fb-402b-ad68-51acac08b514_wgs_gdc_realn.bam 84152106557 BAM harmonized CPTAC3 5dc33b42-8c3b-442f-8ad9-9b34ffc488c0 1a78a75dbb634b62a39aa9571cad5719 {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00249.WGS.N C3N-00249 PDA WGS blood_normal CPT0028460002 CPT0028460002.WholeGenome.RP-1303.bam 67483151876 BAM submitted_aligned CPTAC3 00b73968-3184-453e-9f8b-0d8c066f9de3 ba4529efbdb8cd141770f57e65ff10bf {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00249.WGS.N.hg38 C3N-00249 PDA WGS blood_normal CPT0028460002 665f6e49-5c68-43f5-9fe9-67ab623e3bce_gdc_realn.bam 99588228315 BAM harmonized CPTAC3 0db8bf92-5008-4807-96a7-940e4e22fadc fbf71fd07516f2b2e9a310dd826b8994 {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00249.WXS.A C3N-00249 PDA WXS tissue_normal CPT0025760006 CPT0025760006.WholeExome.RP-1303.bam 30825757153 BAM submitted_aligned CPTAC3 c90b3e9b-c9a4-4388-ad0b-efdb6cb4459d 5db6de3294c4bdd916c0df06e7c3192e {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00249.WXS.A.hg38 C3N-00249 PDA WXS tissue_normal CPT0025760006 06e41ea8-02fb-402b-ad68-51acac08b514_wxs_gdc_realn.bam 42000679581 BAM harmonized CPTAC3 51f575fc-40d7-4916-849f-38cb3e3f1243 d393ed882568a27b0473a84bd1754cb0 {"aliquot_tag": "ALQ_73fc173a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00249.WXS.N C3N-00249 PDA WXS blood_normal CPT0028460002 CPT0028460002.WholeExome.RP-1303.bam 35300601184 BAM submitted_aligned CPTAC3 6a8b0cdc-4ac0-4a38-a9b5-08860a9e89b3 e297e0a8d12d08d57f43c0e73cf9fd9b {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00249.WXS.N.hg38 C3N-00249 PDA WXS blood_normal CPT0028460002 665f6e49-5c68-43f5-9fe9-67ab623e3bce_gdc_realn.bam 48891080490 BAM harmonized CPTAC3 aecbcc77-6390-477c-83f1-2736964af1eb 40f19cc4105e39d45cb430e984f1595f {"aliquot_tag": "ALQ_93d2c04d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00249.WXS.T C3N-00249 PDA WXS tumor CPT0025750009_1 CPT0025750009_1.WholeExome.RP-1303.bam 48565101006 BAM submitted_aligned CPTAC3 a8fa94a4-714f-41d2-9166-bc9a8b953af3 2d176052c439f250e553e3921379e58e {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00249.WXS.T.hg38 C3N-00249 PDA WXS tumor CPT0025750009_1 d54a354f-a303-4689-9f1b-fba719fd79ef_wxs_gdc_realn.bam 66309173337 BAM harmonized CPTAC3 d7865025-7006-4123-a5bd-7d717fa971e1 10dc823d82e89de5363e9a112bc3619a {"aliquot_tag": "ALQ_b1ea26bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.MethArray.Green.A C3N-00293 LUAD Methylation_Array tissue_normal CPT0008420009 203028200104_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 e4dae9a4-8fa6-487d-8d72-cec1fe0f3658 74f7e68def08bed2809650d5051e49a0 {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.MethArray.Green.T C3N-00293 LUAD Methylation_Array tumor CPT0008410009 202176290105_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e22b6d78-1420-4bba-8a29-1a84db3bf1b5 675329054ec1d94b8b335208daf75f8e {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.MethArray.Red.A C3N-00293 LUAD Methylation_Array tissue_normal CPT0008420009 203028200104_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 afb5238e-f6a7-4671-bea0-9ef07080de1a 79d9defb379eab88e2adbf0e4a2a6e7f {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.MethArray.Red.T C3N-00293 LUAD Methylation_Array tumor CPT0008410009 202176290105_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 27bc86ce-362d-4a88-9b0a-64c6ff2ce33b 8b75e426f81e245f19e73718ca6c0956 {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.miRNA-Seq.A.hg38 C3N-00293 LUAD miRNA-Seq tissue_normal CPT0008420006 3e9d0699-bb98-4f86-945c-5bb9cae012bc_mirnaseq_gdc_realn.bam 246322365 BAM harmonized CPTAC3 0d0e48b1-68f8-4657-ae7c-51fc87d199aa 12a583cff99bc855a7565cfee672c284 {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.miRNA-Seq.S32_L008_R1.A C3N-00293 LUAD miRNA-Seq tissue_normal CPT0008420006 181108_UNC31-K00269_0162_AH255GBBXY_ACTTGA_S32_L008_R1_001.unaln.bam 226102833 BAM S32_L008_R1 submitted_unaligned CPTAC3 3c9f0b67-1b96-41ed-bee4-a07b101ecc24 ea597613d796a0a57e950277d4d83fd6 {"aliquot_tag": "ALQ_231aa5e9", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.miRNA-Seq.S47_L004_R1.T C3N-00293 LUAD miRNA-Seq tumor CPT0008410006 181113_UNC31-K00269_0164_AH23NNBBXY_GAGTGG_S47_L004_R1_001.unaln.bam 304151894 BAM S47_L004_R1 submitted_unaligned CPTAC3 1a5239e5-bebe-43dd-9d56-2bf8474b4450 464f8b31dd02f96a7ffafb611d086110 {"aliquot_tag": "ALQ_64badf39", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.miRNA-Seq.T.hg38 C3N-00293 LUAD miRNA-Seq tumor CPT0008410006 11e70783-9451-4527-9f70-f5eb4ac1cdcc_mirnaseq_gdc_realn.bam 326652769 BAM harmonized CPTAC3 5e582363-c033-4f85-9b06-43c7e4a28bc9 0ad06dc0955fe5e9825a74282cd18b31 {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.RNA-Seq.chimeric.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.chimeric.gdc_realn.bam 122224168 BAM chimeric harmonized CPTAC3 0b390525-5d7c-45a5-8abb-387f73bf38d1 3520c0ae8a70cf40f3b853db240574c5 {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.RNA-Seq.chimeric.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.chimeric.gdc_realn.bam 85147575 BAM chimeric harmonized CPTAC3 d59b6ea1-1baf-4d8e-a7a9-d80fffb268c8 3a96902c616a8b5f86c2b8d573a0cdcc {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.RNA-Seq.genomic.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.genomic.gdc_realn.bam 7884877876 BAM genomic harmonized CPTAC3 1c30782d-091e-458f-9e36-2cf7504e2890 3c3aa69e5a9e871ff9c1e323397bfae6 {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.RNA-Seq.genomic.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.genomic.gdc_realn.bam 12196891163 BAM genomic harmonized CPTAC3 45d98a59-5f21-49be-b41e-76d39e2ab701 473ef8624c4684129f442b2a4c256b5c {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.RNA-Seq.S11_L003_R1.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R1_001.fastq.gz 5249740125 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 cc06dcca-deb2-4ebf-81d9-b61b91ab84e2 e5c01d834dab610a694bcc17a38591dc {"aliquot_tag": "ALQ_64badf39", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.RNA-Seq.S11_L003_R2.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R2_001.fastq.gz 5574681099 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 5734e054-6f57-45a6-8cab-6bfd3e4946e3 5907358b82b1a772c071fffb38181d1b {"aliquot_tag": "ALQ_64badf39", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.RNA-Seq.S3_L001_R1.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R1_001.fastq.gz 3409416057 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 d7c1bd83-f32c-4f75-ae4f-5a57e89e4cd4 9076e6f615c33aeb50f3096f764631f1 {"aliquot_tag": "ALQ_231aa5e9", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.RNA-Seq.S3_L001_R2.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R2_001.fastq.gz 3765583991 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 f9707f05-8ee0-49dd-8cc8-6758d528d4e8 81af7bb53568b6f6fd84eddbb1f7ff0c {"aliquot_tag": "ALQ_231aa5e9", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.RNA-Seq.transcriptome.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.transcriptome.gdc_realn.bam 7449514604 BAM transcriptome harmonized CPTAC3 ffa0b027-6578-4ff7-8f88-1c2e20c76ad6 0ae8c48b99cf7760ba7524eb31ec73ce {"aliquot_tag": "ALQ_231aa5e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.RNA-Seq.transcriptome.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.transcriptome.gdc_realn.bam 11540988777 BAM transcriptome harmonized CPTAC3 66365b1e-d0f7-474f-89cb-3d8505e5266b ceac54693ab29c66d744cd591c5942f5 {"aliquot_tag": "ALQ_64badf39", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.WGS.A C3N-00293 LUAD WGS tissue_normal CPT0008420009 CPT0008420009.WholeGenome.RP-1303.bam 60226399163 BAM submitted_aligned CPTAC3 654c9698-5b5d-46f3-a507-3f75384a4e30 197afd192a799ad721a85eb8b2ec632d {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.WGS.A.hg38 C3N-00293 LUAD WGS tissue_normal CPT0008420009 6904ca6f-304b-45ec-8b94-4a84d5abba18_wgs_gdc_realn.bam 89362877457 BAM harmonized CPTAC3 e1234f55-f36a-425a-be25-8fe701beda3d 33b12578b6c8c65328b5eff15545d038 {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.WGS.N C3N-00293 LUAD WGS blood_normal CPT0008430002 CPT0008430002.WholeGenome.RP-1303.bam 78241427572 BAM submitted_aligned CPTAC3 2985f867-e665-4e70-9770-c77839f196b2 f03984b3ade91d62a6ddb129c8129b1e {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00293.WGS.N.hg38 C3N-00293 LUAD WGS blood_normal CPT0008430002 4df34544-f9af-46ce-a1f0-926910b6686f_gdc_realn.bam 115527126689 BAM harmonized CPTAC3 d01ef2ab-cfa8-480b-b6a7-75e0af8d0f70 7e8031dc0dd352365df015f789c571fd {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00293.WGS.T C3N-00293 LUAD WGS tumor CPT0008410009 CPT0008410009.WholeGenome.RP-1303.bam 65990502199 BAM submitted_aligned CPTAC3 ca7fe1a3-f51c-46ce-b839-6616f87ad34a 6711ff0ea23787a1457564d50158a0c7 {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.WGS.T.hg38 C3N-00293 LUAD WGS tumor CPT0008410009 530076e9-9ce2-4216-9576-d4821852841a_gdc_realn.bam 97569704402 BAM harmonized CPTAC3 79885f34-dfea-459a-9d9a-ea66bf5f6e2e c2a50542cec0b3b4e453ddffe4f4ed94 {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.WXS.A C3N-00293 LUAD WXS tissue_normal CPT0008420009 CPT0008420009.WholeExome.RP-1303.bam 27078409849 BAM submitted_aligned CPTAC3 45799c7d-38f9-41b4-9021-5cf2dba9aa15 87e275e1b0fe53e9a3843991d872357e {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.WXS.A.hg38 C3N-00293 LUAD WXS tissue_normal CPT0008420009 6904ca6f-304b-45ec-8b94-4a84d5abba18_wxs_gdc_realn.bam 36456297290 BAM harmonized CPTAC3 09a6fdf9-0316-4ead-a271-a49b8515f4eb 26f5ba545e410fdb6b6317bf3a5cdcaa {"aliquot_tag": "ALQ_b3a5b878", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00293.WXS.N C3N-00293 LUAD WXS blood_normal CPT0008430002 CPT0008430002.WholeExome.RP-1303.bam 26906320054 BAM submitted_aligned CPTAC3 86b8706c-18c6-46cc-8ba7-fba1c0e11291 1d4ad106c00ccae6e286ca9da0998f29 {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00293.WXS.N.hg38 C3N-00293 LUAD WXS blood_normal CPT0008430002 4df34544-f9af-46ce-a1f0-926910b6686f_gdc_realn.bam 36851096449 BAM harmonized CPTAC3 243ff6d2-3847-4958-ab9c-0967e667f466 701fb06d2c9ccd8a02ab011a9bdd8672 {"aliquot_tag": "ALQ_19174840", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00293.WXS.T C3N-00293 LUAD WXS tumor CPT0008410009 CPT0008410009.WholeExome.RP-1303.bam 45177677818 BAM submitted_aligned CPTAC3 3fc43303-6955-43f8-bc55-ee2afafda612 1171f4766ebee58a6d093d8ecf18de0b {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00293.WXS.T.hg38 C3N-00293 LUAD WXS tumor CPT0008410009 530076e9-9ce2-4216-9576-d4821852841a_gdc_realn.bam 62789380638 BAM harmonized CPTAC3 5433b105-3675-4d46-a617-2fa40c72a65f 70e33012bc134fe21622032e3bb97ceb {"aliquot_tag": "ALQ_f405c2a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.MethArray.Green.T C3N-00294 LUAD Methylation_Array tumor CPT0008450006 202184990063_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 71341e8a-9231-4728-b984-c4b7f0112b0e 6d70505fb6250ac799eb73aa429d873b {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.MethArray.Red.T C3N-00294 LUAD Methylation_Array tumor CPT0008450006 202184990063_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 eb170ebb-c8eb-4ff8-9fe0-6437acc7b09f 83e8b5e7f8e90a849612e1e9919e1875 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.miRNA-Seq.S7_L003_R1.T C3N-00294 LUAD miRNA-Seq tumor CPT0008450009 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L003_R1_001.unaln.bam 222126586 BAM S7_L003_R1 submitted_unaligned CPTAC3 8c2fc9d6-921d-4690-b270-10baabddd784 e18cbdc7a61eec5c91bab85ff23c0522 {"aliquot_tag": "ALQ_1856468", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.miRNA-Seq.T.hg38 C3N-00294 LUAD miRNA-Seq tumor CPT0008450009 141c19a6-44d6-43d5-9b0c-2436d3a0eaee_mirnaseq_gdc_realn.bam 244490797 BAM harmonized CPTAC3 62586c13-9287-4914-9674-66607f871e24 c1486bac6575b7dd97c5586bc228013d {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.RNA-Seq.chimeric.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.chimeric.gdc_realn.bam 85402503 BAM chimeric harmonized CPTAC3 21c7110b-6874-48b5-bcf9-302b7fbaecfc 8d9e46c911f5da963ea00e204e023c51 {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.RNA-Seq.genomic.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.genomic.gdc_realn.bam 6356952783 BAM genomic harmonized CPTAC3 e07a0fad-8ad8-4c36-95f7-e7f455d321a8 5a8e6f76758d3fe13c919f50a47185f4 {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.RNA-Seq.S8_L006_R1.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R1_001.fastq.gz 3047799893 FASTQ S8_L006_R1 submitted_unaligned CPTAC3 8b874fe7-02a2-4b8b-ae9c-0e7c74e25df3 e67a727fc3b8e8a989b46dec5e7c3146 {"aliquot_tag": "ALQ_1856468", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.RNA-Seq.S8_L006_R2.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R2_001.fastq.gz 3434909117 FASTQ S8_L006_R2 submitted_unaligned CPTAC3 38f54b19-88c4-4c88-97d5-c42d04821642 be99e6ae4849fc950d3ed76d54723d09 {"aliquot_tag": "ALQ_1856468", "sample": "S8", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.RNA-Seq.transcriptome.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.transcriptome.gdc_realn.bam 8129769764 BAM transcriptome harmonized CPTAC3 8de41fe9-56a6-4b60-b933-0eec0be97124 87c5668e99a43b1daa0ef2fca335b81a {"aliquot_tag": "ALQ_1856468", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.Targeted.T C3N-00294 LUAD Targeted_Sequencing tumor CPT0008450006 CPT0008450006.CustomSelection.RP-1303.PDO-18786.bam 4674990457 BAM submitted_aligned CPTAC3 7f4b8e6e-1a71-413e-8d38-eff24dfdaa0d b1c9f9e8a379633e7775551c9383cc66 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.Targeted.T.hg38 C3N-00294 LUAD Targeted_Sequencing tumor CPT0008450006 93912139-ca7d-426f-9b58-00db34bac3c8_targetedsequencing_gdc_realn.bam 6560853419 BAM harmonized CPTAC3 c746d72d-506a-422d-a664-2d23b5ea045e e2e4b59cf03ace769e537731326dbd41 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.WGS.N C3N-00294 LUAD WGS blood_normal CPT0008490002 CPT0008490002.WholeGenome.RP-1303.bam 68544992006 BAM submitted_aligned CPTAC3 78ab0236-ff4f-49ff-99a4-a2b85c59b8f9 1690904829bc049a44ba438141a41287 {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00294.WGS.N.hg38 C3N-00294 LUAD WGS blood_normal CPT0008490002 1d890481-f944-4643-a8b7-643489006a49_gdc_realn.bam 104808950878 BAM harmonized CPTAC3 74f2bb03-dff8-4b6f-a724-a7661b1c6b9a 680e78593cea254705e1fdf971ef05c9 {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00294.WGS.T C3N-00294 LUAD WGS tumor CPT0008450006 CPT0008450006.WholeGenome.RP-1303.bam 62129163394 BAM submitted_aligned CPTAC3 80aa6b72-56a1-4c98-8892-080ce2cbf9f5 03104a13c603b7ce7b6b447a79cd252b {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.WGS.T.hg38 C3N-00294 LUAD WGS tumor CPT0008450006 93912139-ca7d-426f-9b58-00db34bac3c8_gdc_realn.bam 93514107468 BAM harmonized CPTAC3 818f2186-f50e-420f-9a4d-38e0db631e52 5c6a9f61b378935fed9b0882f4cbcac2 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.WXS.N C3N-00294 LUAD WXS blood_normal CPT0008490002 CPT0008490002.WholeExome.RP-1303.bam 30181324670 BAM submitted_aligned CPTAC3 fe874583-b8ed-4b16-af6a-c99b3ae3b789 82c0a9d3d4fd274e9eb578e50bea413d {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00294.WXS.N.hg38 C3N-00294 LUAD WXS blood_normal CPT0008490002 1d890481-f944-4643-a8b7-643489006a49_gdc_realn.bam 41288094231 BAM harmonized CPTAC3 07e2e2bb-355a-42b1-9f31-f05a6384c16b ca501fdbfffdb228bb5a65ad03745d05 {"aliquot_tag": "ALQ_53a750e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00294.WXS.T C3N-00294 LUAD WXS tumor CPT0008450006 CPT0008450006.WholeExome.RP-1303.bam 28787906340 BAM submitted_aligned CPTAC3 3222c951-46da-441c-b5ce-65d469ea07ef 1d4a399c636df83f259f41a9ad065a5c {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00294.WXS.T.hg38 C3N-00294 LUAD WXS tumor CPT0008450006 93912139-ca7d-426f-9b58-00db34bac3c8_gdc_realn.bam 39192168418 BAM harmonized CPTAC3 dd47d085-78a0-4450-96a2-e1bfeabe12dd 860699acd375dc1678eca6946aab5025 {"aliquot_tag": "ALQ_913a79f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.MethArray.Green.T C3N-00295 HNSCC Methylation_Array tumor CPT0008520010 202176290095_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4db8cc9c-9741-49bb-b1e3-c2da64ad722a fa62a1e45b23e41a56acbdb771e6cc9a {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.MethArray.Red.T C3N-00295 HNSCC Methylation_Array tumor CPT0008520010 202176290095_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 57e7e0ca-6d7c-468f-9198-515e29c9a990 6b1368c85852f9910a12e45c77a72401 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.miRNA-Seq.S8_L003_R1.T C3N-00295 HNSCC miRNA-Seq tumor CPT0008520013 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L003_R1_001.unaln.bam 218079267 BAM S8_L003_R1 submitted_unaligned CPTAC3 43f72fcd-15d7-4104-8a07-61cd86aa4190 3817cb90cf14262edd4adebaece91255 {"aliquot_tag": "ALQ_8137b382", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.miRNA-Seq.T.hg38 C3N-00295 HNSCC miRNA-Seq tumor CPT0008520013 d8660498-643c-43d6-9c86-c2579697a18a_mirnaseq_gdc_realn.bam 254493016 BAM harmonized CPTAC3 7831544a-6d4c-47c9-884d-d96326b39507 2d2884c75ad91dcfd9fae4e9ea35ab1a {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.RNA-Seq.chimeric.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.chimeric.gdc_realn.bam 67050641 BAM chimeric harmonized CPTAC3 3d93f948-d5c7-4cf5-807b-02b198b4619d 40ba2f1487ed7ed8e0cc2c9cc42485a3 {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.RNA-Seq.genomic.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.genomic.gdc_realn.bam 9731604181 BAM genomic harmonized CPTAC3 9326aef9-6227-43f8-b4ef-6f1f17cc6944 aaae26f7b27267be126c5c43c5acfc65 {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.RNA-Seq.S7_L008_R1.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R1_001.fastq.gz 3863941490 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 1c982cc8-17a7-4850-b250-c0e26fa6da6b a19c3d99de0080b72f957f97578dc762 {"aliquot_tag": "ALQ_8137b382", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.RNA-Seq.S7_L008_R2.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4154250558 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 761b2689-7ca3-4037-a135-4767f1822400 a9f98980271c457e9e480320f8c21811 {"aliquot_tag": "ALQ_8137b382", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.RNA-Seq.transcriptome.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.transcriptome.gdc_realn.bam 9790173534 BAM transcriptome harmonized CPTAC3 a3c85ed3-89d1-40ee-840a-eb8394386beb c54011783f747d4f7244e127af5a68d4 {"aliquot_tag": "ALQ_8137b382", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.WGS.N C3N-00295 HNSCC WGS blood_normal CPT0008550002 CPT0008550002.WholeGenome.RP-1303.bam 68769407089 BAM submitted_aligned CPTAC3 d85f9b46-5452-46ab-84a6-5a4ec7d7a44d 1bcfee755ceef2269d5778b7b8e85fb2 {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00295.WGS.N.hg38 C3N-00295 HNSCC WGS blood_normal CPT0008550002 3a76fc90-18b6-4046-9e9b-feac9408b617_gdc_realn.bam 99621106246 BAM harmonized CPTAC3 3a61ca3a-8449-478d-9bec-ad78a9eaa34c 77f5350a7946d2be03677b49275f4d83 {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00295.WGS.T C3N-00295 HNSCC WGS tumor CPT0008520010 CPT0008520010.WholeGenome.RP-1303.bam 70710808692 BAM submitted_aligned CPTAC3 b66bb487-d847-4802-b7f0-bf39d09cb448 94f1edc2861291323aaa29fea2e448ff {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.WGS.T.hg38 C3N-00295 HNSCC WGS tumor CPT0008520010 ade05a36-b5c8-4aed-9156-e69d7ac1b32a_gdc_realn.bam 103306928832 BAM harmonized CPTAC3 445bf8ce-3015-451e-963f-8e76a50af6fc f65064c696e33801ce774a9d601d6ee6 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.WXS.N C3N-00295 HNSCC WXS blood_normal CPT0008550002 CPT0008550002.WholeExome.RP-1303.bam 23515079395 BAM submitted_aligned CPTAC3 d1269d82-3cdb-4fb4-9f9c-ff4ec870d82a 4e82339347a4a32ec6d82245562eb4fe {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00295.WXS.N.hg38 C3N-00295 HNSCC WXS blood_normal CPT0008550002 3a76fc90-18b6-4046-9e9b-feac9408b617_gdc_realn.bam 32400118627 BAM harmonized CPTAC3 6ccddafd-f040-4cb9-a789-c2711c89efc2 cabfabd3351699f6fd639a58586c08c5 {"aliquot_tag": "ALQ_5d0b6e45", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00295.WXS.T C3N-00295 HNSCC WXS tumor CPT0008520010 CPT0008520010.WholeExome.RP-1303.bam 25215499833 BAM submitted_aligned CPTAC3 3561a1cf-b672-407f-a40b-01468f736313 21c808fc897e516ce711781f36b86aa5 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00295.WXS.T.hg38 C3N-00295 HNSCC WXS tumor CPT0008520010 ade05a36-b5c8-4aed-9156-e69d7ac1b32a_gdc_realn.bam 34306341120 BAM harmonized CPTAC3 15c663bc-dc3a-432d-9389-e23aaaddc686 b6f876bec260672c2669d5452a8a0061 {"aliquot_tag": "ALQ_183ee238", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.MethArray.Green.T C3N-00297 HNSCC Methylation_Array tumor CPT0011130011 202184900104_R07C01_Grn.idat 13676256 IDAT Green NA CPTAC3 d06595d6-9fb1-4fec-b752-7187186a8d17 992390a2526cf4fa0d4cf7d31ffff2f4 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.MethArray.Red.T C3N-00297 HNSCC Methylation_Array tumor CPT0011130011 202184900104_R07C01_Red.idat 13676256 IDAT Red NA CPTAC3 9cdfd325-a807-4946-9eaa-1e4f75098cbd 6eb95b4f1d9e93cb6e92d85f60c179cc {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.miRNA-Seq.S48_L004_R1.T C3N-00297 HNSCC miRNA-Seq tumor CPT0011130008 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGGCA_S48_L004_R1_001.unaln.bam 160723775 BAM S48_L004_R1 submitted_unaligned CPTAC3 88604bda-2ef3-4732-ae5a-cca21e153275 1b29b478ca13026ccf50abb65b1a8cc7 {"aliquot_tag": "ALQ_f03d75a0", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.miRNA-Seq.T.hg38 C3N-00297 HNSCC miRNA-Seq tumor CPT0011130008 89633866-2352-4cbd-951b-5745206fd0af_mirnaseq_gdc_realn.bam 178151690 BAM harmonized CPTAC3 5965bafc-7cd2-433d-aca0-bb71b838d928 8490b6bd8648331213cbc5e4f9e15f77 {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.RNA-Seq.chimeric.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.chimeric.gdc_realn.bam 50000977 BAM chimeric harmonized CPTAC3 e84c6fbe-01b9-404b-9265-5f4666ca3d6f b45e90b1fc6b378b5c894563a7dd73ae {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.RNA-Seq.genomic.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.genomic.gdc_realn.bam 7251377139 BAM genomic harmonized CPTAC3 4346ca17-72bb-4eb9-a055-f490b9548c8c ad94040697094f3b515994defaa7cc03 {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.RNA-Seq.S6_L002_R1.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3051374895 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 a3704d21-499b-4477-a72d-1a72523ec932 47d744add5412f4ab28b0a8f79d44e96 {"aliquot_tag": "ALQ_f03d75a0", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.RNA-Seq.S6_L002_R2.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3283338741 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 4bd92b8d-2088-4e14-90e0-55776a4fd580 1f097bbd6f8e99e69a88475860f57e9e {"aliquot_tag": "ALQ_f03d75a0", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.RNA-Seq.transcriptome.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.transcriptome.gdc_realn.bam 8431304728 BAM transcriptome harmonized CPTAC3 f164b620-0ae8-46ce-88a1-42f15875bb54 5d640f5ebce2ff28982f8572d1d33a3e {"aliquot_tag": "ALQ_f03d75a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.WGS.N C3N-00297 HNSCC WGS blood_normal CPT0011220002 CPT0011220002.WholeGenome.RP-1303.bam 76589993105 BAM submitted_aligned CPTAC3 1b3e6358-5503-4b43-aced-e2ee4e3db77c f5393c7f6e9e6f2566266d653238c362 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00297.WGS.N.hg38 C3N-00297 HNSCC WGS blood_normal CPT0011220002 45660f8b-82d7-4a42-a1b6-9f3e418134d5_gdc_realn.bam 113431061234 BAM harmonized CPTAC3 347b4933-c795-412b-822a-9aa47c137237 76ce0cd257660beb3f69a2ce7718b069 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00297.WGS.T C3N-00297 HNSCC WGS tumor CPT0011130011 CPT0011130011.WholeGenome.RP-1303.bam 63955265775 BAM submitted_aligned CPTAC3 c8d46d58-9f83-425b-85d7-3d22d63a1b73 615257705a709331c224942e1909e825 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.WGS.T.hg38 C3N-00297 HNSCC WGS tumor CPT0011130011 cb3c02a0-bc32-4925-8c2b-71cee16a5360_gdc_realn.bam 94794746494 BAM harmonized CPTAC3 3acd1dff-51d3-486d-8c59-bed071b63dde b25100124f54e7115f3d237a10c33663 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.WXS.N C3N-00297 HNSCC WXS blood_normal CPT0011220002 CPT0011220002.WholeExome.RP-1303.bam 31301814166 BAM submitted_aligned CPTAC3 755986b1-6632-4440-8a3d-91c67150c164 c1e07e532f95f83f5d8ca40c3de81878 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00297.WXS.N.hg38 C3N-00297 HNSCC WXS blood_normal CPT0011220002 45660f8b-82d7-4a42-a1b6-9f3e418134d5_gdc_realn.bam 44316343388 BAM harmonized CPTAC3 b732feb2-aaa2-4972-bb11-0a8bbc9b34dd d4f9d26cf7e55474f80206c1fb02e972 {"aliquot_tag": "ALQ_ab1cc7a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00297.WXS.T C3N-00297 HNSCC WXS tumor CPT0011130011 CPT0011130011.WholeExome.RP-1303.bam 36063350732 BAM submitted_aligned CPTAC3 34d80271-3cc1-41a6-8d8a-2109a0952174 1adb1dda1a7d33177d7bd9c7cf71e3c1 {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00297.WXS.T.hg38 C3N-00297 HNSCC WXS tumor CPT0011130011 cb3c02a0-bc32-4925-8c2b-71cee16a5360_gdc_realn.bam 50477031364 BAM harmonized CPTAC3 a899b8fc-e27a-4824-b655-07030345c2b1 5ecbe9670f9d9205246e039c80ea186c {"aliquot_tag": "ALQ_90fafc45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.MethArray.Green.T C3N-00299 HNSCC Methylation_Array tumor CPT0008630006 202184900110_R07C01_Grn.idat 13676256 IDAT Green NA CPTAC3 c1bc8511-83d4-4038-a64c-616a8089be58 ee908b017b1ad89fc94565bbbea048e1 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.MethArray.Red.T C3N-00299 HNSCC Methylation_Array tumor CPT0008630006 202184900110_R07C01_Red.idat 13676256 IDAT Red NA CPTAC3 4b11eaf3-b63c-4680-9c3d-61b2a9eb3194 c5ab13d298556d90e7b11d05c89800e5 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.miRNA-Seq.S12_L005_R1.T C3N-00299 HNSCC miRNA-Seq tumor CPT0008630009 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L005_R1_001.unaln.bam 217779779 BAM S12_L005_R1 submitted_unaligned CPTAC3 403926f0-859f-4f5e-8812-5939368cbff5 e22d4c703766ee313a2bd1c932a8003b {"aliquot_tag": "ALQ_c30d30c3", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.miRNA-Seq.T.hg38 C3N-00299 HNSCC miRNA-Seq tumor CPT0008630009 7f775d33-ead4-4cf8-adeb-93c838408f77_mirnaseq_gdc_realn.bam 242506303 BAM harmonized CPTAC3 d9d6ca4d-b41c-412f-abf7-f30bc78ef6b6 d0ad482d78007bec4130e15e85349577 {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.RNA-Seq.chimeric.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.chimeric.gdc_realn.bam 79114765 BAM chimeric harmonized CPTAC3 17240db2-707e-430b-9125-cb25ec6732b3 66c9eb30b7816f8f7454b96b6d0fddcf {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.RNA-Seq.genomic.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.genomic.gdc_realn.bam 7884943547 BAM genomic harmonized CPTAC3 d8b6f430-225f-4a57-b806-63087dfdf27c c59b04f7825d6f52a283c7d578574d31 {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.RNA-Seq.S3_L008_R1.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 3766132773 FASTQ S3_L008_R1 submitted_unaligned CPTAC3 94cda123-843d-496d-ad34-4ada42f543f6 a4da99520d99f8b19aa1ba252f041cc5 {"aliquot_tag": "ALQ_c30d30c3", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.RNA-Seq.S3_L008_R2.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4094657090 FASTQ S3_L008_R2 submitted_unaligned CPTAC3 9ea5625c-20dd-48b6-a2d9-e11d3c268c26 a45b1c4881403bab84a06b91f9bfc8ff {"aliquot_tag": "ALQ_c30d30c3", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.RNA-Seq.transcriptome.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.transcriptome.gdc_realn.bam 11767888567 BAM transcriptome harmonized CPTAC3 89a7ecd6-c36d-44d9-8439-2d7e3e63aded ba4b3d47541923ed36f269916504d023 {"aliquot_tag": "ALQ_c30d30c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.WGS.N C3N-00299 HNSCC WGS blood_normal CPT0008670002 CPT0008670002.WholeGenome.RP-1303.bam 62247189218 BAM submitted_aligned CPTAC3 38b73e5b-752f-4689-9fb1-83a8f91049c3 126e9a52a29889245e4995a37fa3294e {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00299.WGS.N.hg38 C3N-00299 HNSCC WGS blood_normal CPT0008670002 777ac78e-f376-43e8-833c-3f1706ff74b8_gdc_realn.bam 94166790868 BAM harmonized CPTAC3 fafb3d0c-4fd3-433f-a922-19012047f4eb 398facdd7e358315075f309e2503f9fc {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00299.WGS.T C3N-00299 HNSCC WGS tumor CPT0008630006 CPT0008630006.WholeGenome.RP-1303.bam 77911099124 BAM submitted_aligned CPTAC3 65fa71f2-daef-4bd0-bcbe-54f74c9fc6cc 1d30dd9da9c9c912de0ba1a3464fc466 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.WGS.T.hg38 C3N-00299 HNSCC WGS tumor CPT0008630006 a0d54515-7b4c-476e-8f0a-1bc4c22acd39_gdc_realn.bam 115285058131 BAM harmonized CPTAC3 bed82688-289d-4acb-84d1-8e9401048928 9d28901a61deb8a96c50a035cb5d7911 {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.WXS.N C3N-00299 HNSCC WXS blood_normal CPT0008670002 CPT0008670002.WholeExome.RP-1303.bam 30348731960 BAM submitted_aligned CPTAC3 56c18146-ae16-46c5-a689-3977e9cd14ca 31436c33c2b610c28f3653fb4cac9eef {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00299.WXS.N.hg38 C3N-00299 HNSCC WXS blood_normal CPT0008670002 777ac78e-f376-43e8-833c-3f1706ff74b8_gdc_realn.bam 41823840347 BAM harmonized CPTAC3 b00b3046-f5d5-407b-8b0d-cb255cd77b2d 428fb5be10182321485ab319c9ebcd5e {"aliquot_tag": "ALQ_a15f4f8b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00299.WXS.T C3N-00299 HNSCC WXS tumor CPT0008630006 CPT0008630006.WholeExome.RP-1303.bam 33803647775 BAM submitted_aligned CPTAC3 8418ea22-deb0-448d-8692-e536cf7becf9 d3cff289c693d0016aabe0541e1e5c0c {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00299.WXS.T.hg38 C3N-00299 HNSCC WXS tumor CPT0008630006 a0d54515-7b4c-476e-8f0a-1bc4c22acd39_gdc_realn.bam 46802692357 BAM harmonized CPTAC3 14615c74-e394-46a8-b1c3-ed6f49819246 3dbe7a9caa9255b2ed44be18178113eb {"aliquot_tag": "ALQ_53b22d52", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.ADD_9d8fe0f.MethArray.Green.T C3N-00302 PDA Methylation_Array tumor CPT0008750012 202184900148_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 c833c77d-68ef-4fa7-9ea8-51f8e0d3747a c4d1e1f1e387962b211398a4b350bb3d {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.ADD_9d8fe0f.MethArray.Red.T C3N-00302 PDA Methylation_Array tumor CPT0008750012 202184900148_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 2d13c5a4-f1de-48a0-abec-d3f45f9649dd d42872257f96999fb4228275e4f95d8a {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.ADD_9d8fe0f.WGS.T C3N-00302 PDA WGS tumor CPT0008750012 CPT0008750012.WholeGenome.RP-1303.bam 65241648925 BAM submitted_aligned CPTAC3 90cd7889-cead-4525-8c40-7117a68fe456 44cd94489e7f24c9bdc3199e69b3aaef {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.ADD_9d8fe0f.WGS.T.hg38 C3N-00302 PDA WGS tumor CPT0008750012 c702097d-4a63-4f18-9928-c89d27fcfaaf_gdc_realn.bam 98394166226 BAM harmonized CPTAC3 bdb0f4c0-d499-459a-9cdf-9f5df1d56b67 a5a3a1b989022c748adc33a90bfbccc6 {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.ADD_9d8fe0f.WXS.T C3N-00302 PDA WXS tumor CPT0008750012 CPT0008750012.WholeExome.RP-1303.bam 35820800270 BAM submitted_aligned CPTAC3 fb534c3d-f92a-4c20-82c6-a54fab71e878 db8c9b7b5e339f3e1aa62b9173740fc6 {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.ADD_9d8fe0f.WXS.T.hg38 C3N-00302 PDA WXS tumor CPT0008750012 c702097d-4a63-4f18-9928-c89d27fcfaaf_gdc_realn.bam 48622399305 BAM harmonized CPTAC3 7edc91e9-a711-47ab-9faf-4944b4419e0a f2885515057a5f599297779009ffbf8d {"aliquot_tag": "ADD_9d8fe0f", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.miRNA-Seq.S11_L003_R1.T C3N-00302 PDA miRNA-Seq tumor CPT0008750009 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L003_R1_001.unaln.bam 260612851 BAM S11_L003_R1 submitted_unaligned CPTAC3 0196b828-604c-4241-b9ed-bf98ced75253 8198ce1672679cb78b429dc3caf8c7b7 {"aliquot_tag": "ALQ_871116c6", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.miRNA-Seq.T.hg38 C3N-00302 PDA miRNA-Seq tumor CPT0008750009 fa0d00a2-2539-45d5-af97-36f333c01e07_mirnaseq_gdc_realn.bam 280982993 BAM harmonized CPTAC3 b58c9eb1-8660-4be2-b0b0-47e0013637d1 613e24ee2de414df99d7ff65a3ea804c {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.RNA-Seq.chimeric.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.chimeric.gdc_realn.bam 69093614 BAM chimeric harmonized CPTAC3 933f9ca3-6d56-4943-9e77-30f6a9fd93ee 869ccc4274e9619c7e554ec097437d84 {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.RNA-Seq.genomic.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.genomic.gdc_realn.bam 8056196040 BAM genomic harmonized CPTAC3 2642c7df-3a23-4022-950a-afb559055b1c ede101b31c91082f47e1cfadf2435d8a {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.RNA-Seq.S1_L008_R1.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R1_001.fastq.gz 3558625479 FASTQ S1_L008_R1 submitted_unaligned CPTAC3 82397376-7221-4de6-aa6a-1debda5561ac db7c45f437a69fcfb4efb10390743b30 {"aliquot_tag": "ALQ_871116c6", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.RNA-Seq.S1_L008_R2.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R2_001.fastq.gz 3833619168 FASTQ S1_L008_R2 submitted_unaligned CPTAC3 da8d50a5-d703-4617-9895-33814419e004 3ecd9251e27fd07cc46f2cb1353ed3f1 {"aliquot_tag": "ALQ_871116c6", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.RNA-Seq.transcriptome.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.transcriptome.gdc_realn.bam 8911557462 BAM transcriptome harmonized CPTAC3 ffdc7239-f94e-4459-a1b1-84cfb7449588 2b0214c1e9cd64ad0e60764e658bc091 {"aliquot_tag": "ALQ_871116c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.WGS.N C3N-00302 PDA WGS blood_normal CPT0008790002 CPT0008790002.WholeGenome.RP-1303.bam 76432662163 BAM submitted_aligned CPTAC3 7947cc1b-413c-4d33-9edd-d838b88b8b5e 43ace2add928eb51cfc8453d0e39ffd9 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00302.WGS.N.hg38 C3N-00302 PDA WGS blood_normal CPT0008790002 330ca867-0583-4f3f-bd1b-03969b6a3ad3_gdc_realn.bam 113574527429 BAM harmonized CPTAC3 7f1601c1-dc72-4989-b752-a7e76fe983d3 fa8759c361842eb45b6f3bcab65c3942 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00302.WXS.N C3N-00302 PDA WXS blood_normal CPT0008790002 CPT0008790002.WholeExome.RP-1303.bam 28695065956 BAM submitted_aligned CPTAC3 485d8560-03e7-4a71-afa0-f9532a0b19ec 82fe8b905d4f3188fc01a227347b94b6 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00302.WXS.N.hg38 C3N-00302 PDA WXS blood_normal CPT0008790002 330ca867-0583-4f3f-bd1b-03969b6a3ad3_gdc_realn.bam 39347880814 BAM harmonized CPTAC3 90173e9e-8c68-4277-a8f6-416a34591e86 891900593c7cd6c6eda99edf1a7c14a2 {"aliquot_tag": "ALQ_d533224f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00302.WXS.T C3N-00302 PDA WXS tumor CPT0008750012_1 CPT0008750012_1.WholeExome.RP-1303.bam 59806493861 BAM submitted_aligned CPTAC3 2c673b46-8385-42ca-8ca0-5b72fe8dda7c 82cb113f420cebc609e9973bd51afc26 {"aliquot_tag": "ALQ_f0b99952", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00302.WXS.T.hg38 C3N-00302 PDA WXS tumor CPT0008750012_1 34833257-46da-4477-8c58-38147bae6628_wxs_gdc_realn.bam 81267573344 BAM harmonized CPTAC3 be134e69-4b41-4997-b9a8-a47b7dc533c7 3d3da26c8c4914eb28fd9147c6d30928 {"aliquot_tag": "ALQ_f0b99952", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.MethArray.Green.T C3N-00303 PDA Methylation_Array tumor CPT0008800006 202163550076_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7d65186f-cd31-4533-82a3-474815992abf c0d4d45ea4851c27e4a5ceb195b9ea46 {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.MethArray.Red.T C3N-00303 PDA Methylation_Array tumor CPT0008800006 202163550076_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ed3ac9f-21ad-44ff-a884-79df95924a76 3b8722c8b5d01f0bb7bf13a138c74336 {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.miRNA-Seq.S12_L003_R1.T C3N-00303 PDA miRNA-Seq tumor CPT0008800009 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L003_R1_001.unaln.bam 308862040 BAM S12_L003_R1 submitted_unaligned CPTAC3 a203ea68-a10d-4697-a3bf-28c6dc0104f1 9b55b94a685e8ef03eb1f3409376d3ff {"aliquot_tag": "ALQ_bea72b63", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.miRNA-Seq.T.hg38 C3N-00303 PDA miRNA-Seq tumor CPT0008800009 bc6eb149-903a-48b2-9b11-530c652c96e7_mirnaseq_gdc_realn.bam 331174161 BAM harmonized CPTAC3 aa279b7c-6835-4b1b-a08d-86459787669e 1ad3d76f2903ab390b3381f9e16fe8c8 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.RNA-Seq.chimeric.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.chimeric.gdc_realn.bam 104575317 BAM chimeric harmonized CPTAC3 7ba5e864-304f-4646-9e31-0797f77949fa 4ee6ccb411a75da0cbd0de2758c1a941 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.RNA-Seq.genomic.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.genomic.gdc_realn.bam 9475427760 BAM genomic harmonized CPTAC3 66ae7440-81f6-445d-80ec-6a9ec0509f24 4bb550939c22f42bc2b2b7d3bf40b021 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.RNA-Seq.S11_L006_R1.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R1_001.fastq.gz 4037979547 FASTQ S11_L006_R1 submitted_unaligned CPTAC3 a2205d97-18a4-469a-aec7-8aaee1908bda 5afbc304bf90b6dee34da58449c1353a {"aliquot_tag": "ALQ_bea72b63", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.RNA-Seq.S11_L006_R2.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R2_001.fastq.gz 4370195399 FASTQ S11_L006_R2 submitted_unaligned CPTAC3 cac8806d-8099-4e16-b51e-e6803842f737 6f9edf7682c8111736f262617d0c125e {"aliquot_tag": "ALQ_bea72b63", "sample": "S11", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.RNA-Seq.transcriptome.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.transcriptome.gdc_realn.bam 9297622500 BAM transcriptome harmonized CPTAC3 bd5f6132-3168-4a18-b513-a040f0a0ad65 0e23c446396e01d5cc4c3c3a636a09a8 {"aliquot_tag": "ALQ_bea72b63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WGS.N C3N-00303 PDA WGS blood_normal CPT0008850002 CPT0008850002.WholeGenome.RP-1303.bam 64306266108 BAM submitted_aligned CPTAC3 f9820f97-adad-4e63-85ea-7b49cd2a9551 59e4f3e976c6eb7b787f0bf067fa024c {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00303.WGS.N.hg38 C3N-00303 PDA WGS blood_normal CPT0008850002 39d21868-9ae1-4149-b5b0-614e0e53bd40_gdc_realn.bam 94635126439 BAM harmonized CPTAC3 1470eac9-1e5e-47fa-81d5-2064fa403b3f 1d1517c4850ea5a9dbff6fe1e8fd3baa {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00303.WGS.T C3N-00303 PDA WGS tumor CPT0008800006_1 CPT0008800006_1.WholeGenome.RP-1303.bam 151848028365 BAM submitted_aligned CPTAC3 baa1aa87-d080-4a7a-91be-676ff40b3fea d28e46e65d5af3ecb05152bcb1d344dd {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WGS.T C3N-00303 PDA WGS tumor CPT0008800006 CPT0008800006.WholeGenome.RP-1303.bam 66738847362 BAM submitted_aligned CPTAC3 b26601ef-c3f1-4176-a082-4ce8d68daf4f 93be1b8c73d6703690730753c0bb6b0d {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WGS.T.hg38 C3N-00303 PDA WGS tumor CPT0008800006_1 7c67951a-b14b-428c-a410-d56a58ba63e9_wgs_gdc_realn.bam 224777201240 BAM harmonized CPTAC3 4ec78616-b1f7-42fa-a6f1-ebd901e06b25 2aee7b5dd6c0e38aa858161b67c44575 {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WGS.T.hg38 C3N-00303 PDA WGS tumor CPT0008800006 60e7bc90-a701-44e2-b205-6a3654d3c4c9_gdc_realn.bam 99079301964 BAM harmonized CPTAC3 cdd8f375-2443-4632-8ae8-3ddbe63ec68a 3080c6e5e1e873f3b3a33a3801e90aca {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WXS.N C3N-00303 PDA WXS blood_normal CPT0008850002 CPT0008850002.WholeExome.RP-1303.bam 30030055933 BAM submitted_aligned CPTAC3 5e1789ad-24ba-49c0-aed0-b03fe75d4df0 6609db8066bd3fbbb0dd84527d001755 {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00303.WXS.N.hg38 C3N-00303 PDA WXS blood_normal CPT0008850002 39d21868-9ae1-4149-b5b0-614e0e53bd40_gdc_realn.bam 40974308921 BAM harmonized CPTAC3 b3123b75-70f9-414f-add9-635c7a435997 60a50355716c44f13b9623716742365d {"aliquot_tag": "ALQ_e1957d9b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00303.WXS.T C3N-00303 PDA WXS tumor CPT0008800006_1 CPT0008800006_1.WholeExome.RP-1303.bam 58434482109 BAM submitted_aligned CPTAC3 f05586e3-f184-42fa-a60e-6ad8e549ba03 7539bd1c115ce2aebf2fd19d4a0d215b {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WXS.T C3N-00303 PDA WXS tumor CPT0008800006 CPT0008800006.WholeExome.RP-1303.bam 29599046522 BAM submitted_aligned CPTAC3 e253819a-7eb8-49a3-9001-71e6b9cd2624 4e40aeba436a815436804243d576304f {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WXS.T.hg38 C3N-00303 PDA WXS tumor CPT0008800006_1 7c67951a-b14b-428c-a410-d56a58ba63e9_wxs_gdc_realn.bam 80904351093 BAM harmonized CPTAC3 0a3ebdcb-8ddd-4d3e-b777-594131832d40 cb0110d33e575ae3d164330a20cbfa68 {"aliquot_tag": "ALQ_c4146be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00303.WXS.T.hg38 C3N-00303 PDA WXS tumor CPT0008800006 60e7bc90-a701-44e2-b205-6a3654d3c4c9_gdc_realn.bam 41189614596 BAM harmonized CPTAC3 d7a6f87c-be8b-4e62-8204-4841eda86b79 527c21b43c50dab26947f26437f4e8bc {"aliquot_tag": "ALQ_2e1836f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.MethArray.Green.T C3N-00305 CCRCC Methylation_Array tumor CPT0011240009 202178770045_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 a335d658-b90f-4647-b6b1-f62df531d227 200f1b7593d84dfefeb3dd013813d74e {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.MethArray.Red.T C3N-00305 CCRCC Methylation_Array tumor CPT0011240009 202178770045_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 ddacac18-50ed-4008-99a2-5acd8503a283 f532b7d440f60fb2c069a10d3ecc6b6d {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.miRNA-Seq.S31_L004_R1.T C3N-00305 CCRCC miRNA-Seq tumor CPT0011240005 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L004_R1_001.unaln.bam 261116012 BAM S31_L004_R1 submitted_unaligned CPTAC3 e1261a9a-4b0b-4f7b-a18f-5a180145e190 935849f0ef3334d0007ba1d60d9a36bf {"aliquot_tag": "ALQ_ba38a7a3", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.miRNA-Seq.T.hg38 C3N-00305 CCRCC miRNA-Seq tumor CPT0011240005 ac0ea2af-9fd4-431c-a79d-4a197381f522_mirnaseq_gdc_realn.bam 288008647 BAM harmonized CPTAC3 324ba98a-be23-41b0-924e-918cd5337892 bb021bdabb726bb85e50a5196f28d80e {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.RNA-Seq.chimeric.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.chimeric.gdc_realn.bam 85524047 BAM chimeric harmonized CPTAC3 17c0eb6d-4253-4c31-951d-a1d92d46cea9 8a3d9f350405f23b34afe3d02e1471fa {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.RNA-Seq.genomic.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.genomic.gdc_realn.bam 8769367772 BAM genomic harmonized CPTAC3 8b7ade40-b06f-49e5-8754-601ab7764fb8 0dd0401070b1d3c77769a743a76efcf3 {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.RNA-Seq.S7_L002_R1.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R1_001.fastq.gz 3932273979 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 f0323d74-da11-4d79-99da-99b0b1d33f72 9c3e8bbbc7136214a6b58cd442912a3b {"aliquot_tag": "ALQ_ba38a7a3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.RNA-Seq.S7_L002_R2.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R2_001.fastq.gz 4261136184 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 e74b306e-ad75-4a6e-a475-6dbd9448a5f7 cd1f2480ffd083f40ea96c2af94bf6d3 {"aliquot_tag": "ALQ_ba38a7a3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.RNA-Seq.transcriptome.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.transcriptome.gdc_realn.bam 10417896492 BAM transcriptome harmonized CPTAC3 353d8272-99d5-4856-89aa-3fe455b9c3e8 f47f8bee5ed83d528c4ec51093b6d69e {"aliquot_tag": "ALQ_ba38a7a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.WGS.N C3N-00305 CCRCC WGS blood_normal CPT0011270002 CPT0011270002.WholeGenome.RP-1303.bam 60068684575 BAM submitted_aligned CPTAC3 e624c06c-f138-446e-bf87-dd96f9ac8e18 e88a7719d4909e74f28f1f1d77be7c83 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00305.WGS.N.hg38 C3N-00305 CCRCC WGS blood_normal CPT0011270002 7aa7473c-d400-4b86-a30d-1f0e3359fde9_gdc_realn.bam 87981277539 BAM harmonized CPTAC3 0beee5c4-e68d-4c88-b431-eb43a2219bb0 ef34b6cf243ad1205535202c17e25ea0 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00305.WGS.T C3N-00305 CCRCC WGS tumor CPT0011240009 CPT0011240009.WholeGenome.RP-1303.bam 58138510861 BAM submitted_aligned CPTAC3 e3c72249-5640-49c0-bf5e-5af3ada489e5 ea644e63409c2c7cad094252d417a34a {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.WGS.T.hg38 C3N-00305 CCRCC WGS tumor CPT0011240009 9ee3947f-6c74-4886-b0a8-4f33192cf014_gdc_realn.bam 84769279272 BAM harmonized CPTAC3 935d892b-1b8f-4288-b8d3-6825ae555713 f681b478026032917086d3ffb8839446 {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.WXS.N C3N-00305 CCRCC WXS blood_normal CPT0011270002 CPT0011270002.WholeExome.RP-1303.bam 26191978140 BAM submitted_aligned CPTAC3 4c5ff6b2-914b-421a-9b1a-5d4dfff9c8b4 0360ea3546e85b4dfe57d998c8f37f21 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00305.WXS.N.hg38 C3N-00305 CCRCC WXS blood_normal CPT0011270002 7aa7473c-d400-4b86-a30d-1f0e3359fde9_gdc_realn.bam 35683515206 BAM harmonized CPTAC3 5bf8a1b0-8ba1-4166-b187-8b9417b56de5 a3ed3c37a4a2932c8dd719f70db9cb26 {"aliquot_tag": "ALQ_63fc48d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00305.WXS.T C3N-00305 CCRCC WXS tumor CPT0011240009 CPT0011240009.WholeExome.RP-1303.bam 23766147993 BAM submitted_aligned CPTAC3 e3944261-f996-429c-9b32-4e7aa72dfba8 a8527a7781a0ea8a7bb76fe79cf4ec2e {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00305.WXS.T.hg38 C3N-00305 CCRCC WXS tumor CPT0011240009 9ee3947f-6c74-4886-b0a8-4f33192cf014_gdc_realn.bam 32679409297 BAM harmonized CPTAC3 fee5263a-170f-4f11-8ee5-e1195648b83e 970f56e8fbbdf60478e01351ab55d530 {"aliquot_tag": "ALQ_b38eeb88", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.MethArray.Green.T C3N-00306 HNSCC Methylation_Array tumor CPT0011290008 202184900127_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 91446855-2d28-40a8-aa1c-4318665b6242 ec9b343c91b2703fc676fdb83e9f7a11 {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.MethArray.Red.T C3N-00306 HNSCC Methylation_Array tumor CPT0011290008 202184900127_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 abe6b4a4-6900-4a13-8940-4c94f40de57f e156d09f959eeeaff4f1726723ecda9e {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.miRNA-Seq.A.hg38 C3N-00306 HNSCC miRNA-Seq tissue_normal CPT0011320006 4f872d51-24e0-4900-900a-cdb5dd41435c_mirnaseq_gdc_realn.bam 268871934 BAM harmonized CPTAC3 7bd84bd2-04fd-4b2b-90ec-4b479574d6a4 485f80922efa96178529197e22e1bb78 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.miRNA-Seq.S26_L004_R1.T C3N-00306 HNSCC miRNA-Seq tumor CPT0011290005 181012_UNC32-K00270_0124_AH223CBBXY_ACAGTG_S26_L004_R1_001.unaln.bam 218917762 BAM S26_L004_R1 submitted_unaligned CPTAC3 3c34ae49-5901-46ea-b87d-e3d27c2fe669 2b974c737ab79d2db953e19631672ddc {"aliquot_tag": "ALQ_42a86312", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.miRNA-Seq.S28_L005_R1.A C3N-00306 HNSCC miRNA-Seq tissue_normal CPT0011320006 181119_UNC31-K00269_0165_AH27WCBBXY_TGACCA_S28_L005_R1_001.unaln.bam 248485942 BAM S28_L005_R1 submitted_unaligned CPTAC3 89a12a51-06a3-4a7f-98f1-f4f44889b649 8e5eebf3307ebcea64b10963ab8cc7b2 {"aliquot_tag": "ALQ_672dd01c", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.miRNA-Seq.T.hg38 C3N-00306 HNSCC miRNA-Seq tumor CPT0011290005 6b6f1abb-5ca7-446e-9864-c53c5211b83e_mirnaseq_gdc_realn.bam 243310161 BAM harmonized CPTAC3 b934af06-1ac6-4380-a19e-b626c9c868fa 6b4e792342c7e2c5037c3167fed97f65 {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.RNA-Seq.chimeric.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.chimeric.gdc_realn.bam 27327787 BAM chimeric harmonized CPTAC3 f555bfd6-e787-4c15-b5db-65070608adf3 948f63791fb75c9615a842f1e7e1d4c5 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.RNA-Seq.chimeric.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.chimeric.gdc_realn.bam 77324130 BAM chimeric harmonized CPTAC3 c0072cf7-764c-46a1-9cc2-d84ec023b199 66f93c6dae87cffcf57a15777555325c {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.RNA-Seq.genomic.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.genomic.gdc_realn.bam 8203178062 BAM genomic harmonized CPTAC3 c11bbca0-2325-4e16-a8d5-8c3cde2464c5 46cc346047a094862e4565cb03d58c55 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.RNA-Seq.genomic.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.genomic.gdc_realn.bam 11513718505 BAM genomic harmonized CPTAC3 9927dffe-7205-4aeb-a9a9-f58a5a49122b b99330786fe1db5ab685b7cdb54712cd {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.RNA-Seq.S17_L005_R1.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 5235213428 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 9995060c-2016-4690-a7c9-cb39122adbd1 b522e0c1d5d912e7d6c79fbe608ad35e {"aliquot_tag": "ALQ_42a86312", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.RNA-Seq.S17_L005_R2.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 5522054475 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 0e99fd41-6b4d-4d8b-8aca-5b06c619b69b 3c437fcf9a2d79ba9cfc3d38fb49523f {"aliquot_tag": "ALQ_42a86312", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.RNA-Seq.S4_L007_R1.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3871783418 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 a467dacf-bb8c-4987-8ede-d133d9eff823 8a5a0f35dcf5e02d49a42afdce53d421 {"aliquot_tag": "ALQ_672dd01c", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.RNA-Seq.S4_L007_R2.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4076681913 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 a2c9b387-c1f2-4506-8372-06c1114d38bf b42f77b04e7d7c52a17a0e3f66e95b6b {"aliquot_tag": "ALQ_672dd01c", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.RNA-Seq.transcriptome.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.transcriptome.gdc_realn.bam 12110336620 BAM transcriptome harmonized CPTAC3 b97eb161-f56b-4318-8ab7-90e06ca30bb3 88ced4741c35d97fa054b5d084478c75 {"aliquot_tag": "ALQ_672dd01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.RNA-Seq.transcriptome.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.transcriptome.gdc_realn.bam 14220644459 BAM transcriptome harmonized CPTAC3 2fa9f053-60c4-4a77-8870-705d666392fa bc845c88ed6f1faf2e46defd20ceb4b2 {"aliquot_tag": "ALQ_42a86312", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.WGS.N C3N-00306 HNSCC WGS blood_normal CPT0011380006 CPT0011380006.WholeGenome.RP-1303.bam 79140326544 BAM submitted_aligned CPTAC3 76ba8c6b-ca31-442a-be03-23460b07b21a 36e2d5810f3193bc3ab03220ca9f5951 {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00306.WGS.N.hg38 C3N-00306 HNSCC WGS blood_normal CPT0011380006 c970ee29-4d02-480d-b75d-26389fe250bd_gdc_realn.bam 118488589881 BAM harmonized CPTAC3 11d47de2-82bb-4a6e-a63e-e1e0f741ac6f 9d938547d6a2efd489226e52bb0745f0 {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00306.WGS.T C3N-00306 HNSCC WGS tumor CPT0011290008 CPT0011290008.WholeGenome.RP-1303.bam 68754956849 BAM submitted_aligned CPTAC3 5d3be551-b9f3-4cf0-89b8-4622438a3578 d42d39734f1b9ff8ab80a34e52d16bd2 {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.WGS.T.hg38 C3N-00306 HNSCC WGS tumor CPT0011290008 acfd2032-d59d-42cb-aaeb-1f19d3a49ce1_gdc_realn.bam 101626515893 BAM harmonized CPTAC3 8044494a-a134-41a8-a966-2f82009c156f afba00e9b84eaa964667bd680b99709d {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.WXS.A C3N-00306 HNSCC WXS tissue_normal CPT0011320009 CPT0011320009.WholeExome.RP-1303.bam 30965699754 BAM submitted_aligned CPTAC3 eacff357-7185-45f8-973e-c7ce69ca1d3b 98b258ff168a0fa0b8d12a8a4fd87c15 {"aliquot_tag": "ALQ_f792cd8d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.WXS.A.hg38 C3N-00306 HNSCC WXS tissue_normal CPT0011320009 04570fd2-2394-4b4a-a6e9-8ed6a0fd4ed9_wxs_gdc_realn.bam 41193288382 BAM harmonized CPTAC3 694189f6-e158-4976-8dec-bea8ee2e65e9 223f24a6e1682218e63683c94e919009 {"aliquot_tag": "ALQ_f792cd8d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00306.WXS.N C3N-00306 HNSCC WXS blood_normal CPT0011380006 CPT0011380006.WholeExome.RP-1303.bam 32324992510 BAM submitted_aligned CPTAC3 63accee6-2193-4558-89d8-a9b59b0e7e31 3f79e81c308485de8e1875a2f1eaef4f {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00306.WXS.N.hg38 C3N-00306 HNSCC WXS blood_normal CPT0011380006 c970ee29-4d02-480d-b75d-26389fe250bd_gdc_realn.bam 44233401415 BAM harmonized CPTAC3 5e9dcacf-e48a-4786-b858-ed24a714e9d3 6b581d9c1d50dea750ee73b6b25fe344 {"aliquot_tag": "ALQ_2d9dc8bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00306.WXS.T C3N-00306 HNSCC WXS tumor CPT0011290008 CPT0011290008.WholeExome.RP-1303.bam 27250357346 BAM submitted_aligned CPTAC3 ddfdc2cb-16a3-44ba-9c8b-66eb613ace2f c87a3a540ae9eb8a0498cce93e25f5da {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00306.WXS.T.hg38 C3N-00306 HNSCC WXS tumor CPT0011290008 acfd2032-d59d-42cb-aaeb-1f19d3a49ce1_gdc_realn.bam 37218186573 BAM harmonized CPTAC3 d0248d82-4e62-4fdd-88ee-1064edc84603 d9143ddeb272357aaf0422e866b86476 {"aliquot_tag": "ALQ_3c191faf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.MethArray.Green.T C3N-00307 HNSCC Methylation_Array tumor CPT0008930006 202184900149_R06C01_Grn.idat 13676256 IDAT Green NA CPTAC3 1d5f88a4-c3dc-46f0-b301-a6177bafa7df d1143363f7e42e97eb0dba75185cab45 {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.MethArray.Red.T C3N-00307 HNSCC Methylation_Array tumor CPT0008930006 202184900149_R06C01_Red.idat 13676256 IDAT Red NA CPTAC3 bc79276d-218d-4acb-9c28-75496d54bffd 31096aaa5ce900efdac07bb6be237ab1 {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.miRNA-Seq.A.hg38 C3N-00307 HNSCC miRNA-Seq tissue_normal CPT0008960005 3eee06b6-4307-4e1c-bca3-ab7c726565d6_mirnaseq_gdc_realn.bam 202651022 BAM harmonized CPTAC3 28d86cb0-16f2-42a4-bc4b-16bc78bb98a9 4b59a80dca534c9569060f506325ad91 {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.miRNA-Seq.S13_L003_R1.T C3N-00307 HNSCC miRNA-Seq tumor CPT0008930009 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L003_R1_001.unaln.bam 247273408 BAM S13_L003_R1 submitted_unaligned CPTAC3 3d5e5cbe-ef4a-4e04-9a37-d1240f1dbe0e c13313dbc47f1014ac79ccbaa17967c8 {"aliquot_tag": "ALQ_325b8216", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.miRNA-Seq.S23_L001_R1.A C3N-00307 HNSCC miRNA-Seq tissue_normal CPT0008960005 181119_UNC31-K00269_0165_AH27WCBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 180817047 BAM S23_L001_R1 submitted_unaligned CPTAC3 8d59a733-7c44-45a2-8231-34dd3a80c72e af632d6b88a399ee17c871bacbef87fb {"aliquot_tag": "ALQ_f30d414d", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.miRNA-Seq.T.hg38 C3N-00307 HNSCC miRNA-Seq tumor CPT0008930009 c1a379d7-efc0-4ce6-9072-0fda975e50c4_mirnaseq_gdc_realn.bam 275051969 BAM harmonized CPTAC3 6eacf2a7-5dd3-489b-a4a6-7d57019eb12a 71b126597b4e6d815d08a90112b55029 {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.RNA-Seq.chimeric.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.chimeric.gdc_realn.bam 31858254 BAM chimeric harmonized CPTAC3 41e1cc80-c1aa-4ad8-8180-82f91d1f818c 2362122e8bfab782e4e57cc0d657fd05 {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.RNA-Seq.chimeric.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.chimeric.gdc_realn.bam 70101209 BAM chimeric harmonized CPTAC3 28f9a1be-f11c-4ee4-9d96-98e7daf281f5 c7418497a460c5556ad588a3f32d0ecc {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.RNA-Seq.genomic.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.genomic.gdc_realn.bam 8243246758 BAM genomic harmonized CPTAC3 db3550c2-1349-4a45-8ab3-6778d757fc87 7f6b7d0b80c2e11ad8e308359064fe01 {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.RNA-Seq.genomic.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.genomic.gdc_realn.bam 7973855122 BAM genomic harmonized CPTAC3 f83476d4-7542-4752-b089-9d179105021c 984e55c449cfc20b19a7fd9838fad346 {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.RNA-Seq.S3_L005_R1.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R1_001.fastq.gz 3567074463 FASTQ S3_L005_R1 submitted_unaligned CPTAC3 669165d7-8780-4ae4-9498-fa7994b3eda2 b24b5efa03f341375298b114de336c90 {"aliquot_tag": "ALQ_325b8216", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.RNA-Seq.S3_L005_R2.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R2_001.fastq.gz 3830056423 FASTQ S3_L005_R2 submitted_unaligned CPTAC3 90ef718e-5752-4d8b-9543-80ebcba508cb 81c1e70ae92956e7615181cb22585652 {"aliquot_tag": "ALQ_325b8216", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.RNA-Seq.S8_L008_R1.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 3881941919 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 a2cdc279-bef0-4d9f-82f5-9535bf50ea0b fad16843367982785caa9645db82993b {"aliquot_tag": "ALQ_f30d414d", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.RNA-Seq.S8_L008_R2.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4257254829 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 65b30bc5-232e-4ac3-ab95-66e10bc6d8ed 8bd387f65eb6baf8800341c810d806ef {"aliquot_tag": "ALQ_f30d414d", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.RNA-Seq.transcriptome.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.transcriptome.gdc_realn.bam 11902820573 BAM transcriptome harmonized CPTAC3 97ea9cf1-e0c9-4ad5-8bb6-fe74e9fad586 cd432ea48a336ac82082bdc14222dcaf {"aliquot_tag": "ALQ_f30d414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.RNA-Seq.transcriptome.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.transcriptome.gdc_realn.bam 9250526334 BAM transcriptome harmonized CPTAC3 5f370955-aa53-4fea-a6d5-11bf988419fc e4896b90ab2500eecdc877c04cfb35a7 {"aliquot_tag": "ALQ_325b8216", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.WGS.A C3N-00307 HNSCC WGS tissue_normal CPT0008960008 CPT0008960008.WholeGenome.RP-1303.bam 59450442968 BAM submitted_aligned CPTAC3 dc0e1aa6-be5e-4528-bfd2-1eb129d41443 55e785d0017282c13c9d0d7f2e4b4001 {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.WGS.A.hg38 C3N-00307 HNSCC WGS tissue_normal CPT0008960008 76a79796-e8d4-4f45-9412-3d346ab171de_wgs_gdc_realn.bam 86508213236 BAM harmonized CPTAC3 db760550-0155-437c-85b9-dbdd23ab008c 5a79393d9a1ca2371cf096f3e5bf49ea {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.WGS.N C3N-00307 HNSCC WGS blood_normal CPT0008970002 CPT0008970002.WholeGenome.RP-1303.bam 83735049360 BAM submitted_aligned CPTAC3 860847a9-e12b-4cfa-bb72-708c86f7acde 080800ed98857ff86a5357ff157b5517 {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00307.WGS.N.hg38 C3N-00307 HNSCC WGS blood_normal CPT0008970002 8e8a8a98-dbf5-4628-bb3e-cb0bc5eac907_gdc_realn.bam 124905417983 BAM harmonized CPTAC3 7000ec75-4eee-4e03-acf5-8fc555c3b981 cbffdda029caf63ae11c969a3b6dff39 {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00307.WGS.T C3N-00307 HNSCC WGS tumor CPT0008930006 CPT0008930006.WholeGenome.RP-1303.bam 75969346879 BAM submitted_aligned CPTAC3 d6403068-0069-4686-ac5d-423f8cdfdf1d 5ca0742b764ec3fd009f802da1b2e078 {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.WGS.T.hg38 C3N-00307 HNSCC WGS tumor CPT0008930006 27fa7c90-11ae-4586-85e7-fb2e269ad442_gdc_realn.bam 113657057767 BAM harmonized CPTAC3 a1d02572-a87c-45b5-bc41-c533348d7d6d b696a17183b577c57d1c107f2490214e {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.WXS.A C3N-00307 HNSCC WXS tissue_normal CPT0008960008 CPT0008960008.WholeExome.RP-1303.bam 31908235617 BAM submitted_aligned CPTAC3 155d6f24-7573-4166-9b64-e09279dbfb26 e9e46ef8f2b19fe4d5db32d25d18fe3c {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.WXS.A.hg38 C3N-00307 HNSCC WXS tissue_normal CPT0008960008 76a79796-e8d4-4f45-9412-3d346ab171de_wxs_gdc_realn.bam 42699579654 BAM harmonized CPTAC3 1c7ad108-6815-4ad3-ba7e-efa9d753bcbf 39effdba3f4abc6ed29ff6e3b80e13c6 {"aliquot_tag": "ALQ_8dbc3df0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00307.WXS.N C3N-00307 HNSCC WXS blood_normal CPT0008970002 CPT0008970002.WholeExome.RP-1303.bam 28267876770 BAM submitted_aligned CPTAC3 714528a4-00d6-45b1-b573-ddf9fa0becee 36a389fa0dad6f6ffaa3cb880e0a19d3 {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00307.WXS.N.hg38 C3N-00307 HNSCC WXS blood_normal CPT0008970002 8e8a8a98-dbf5-4628-bb3e-cb0bc5eac907_gdc_realn.bam 39374797445 BAM harmonized CPTAC3 a2032b77-f548-4478-8edc-3106067e6ec6 b9051396d09a5e26b275d83ce21a484f {"aliquot_tag": "ALQ_5009fd5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00307.WXS.T C3N-00307 HNSCC WXS tumor CPT0008930006 CPT0008930006.WholeExome.RP-1303.bam 26039962994 BAM submitted_aligned CPTAC3 0ee2f11b-c015-4219-8677-5b4e1188c9ab ee5024ab62f71dd9f10e95843e9f41ad {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00307.WXS.T.hg38 C3N-00307 HNSCC WXS tumor CPT0008930006 27fa7c90-11ae-4586-85e7-fb2e269ad442_gdc_realn.bam 35791635657 BAM harmonized CPTAC3 0336f49b-4d5b-4c2c-8a80-8ab09996d196 53b75dc2eac996b177e50e031c59eeca {"aliquot_tag": "ALQ_a2e49f87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00309.MethArray.Green.T C3N-00309 LSCC Methylation_Array tumor CPT0008330006 202184990013_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7acde140-a65c-4f12-83c1-9ed068b0aaee cd126fc516cdabee537b628c8ae3a878 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.MethArray.Red.T C3N-00309 LSCC Methylation_Array tumor CPT0008330006 202184990013_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3277505b-61cd-482d-abba-f3927f826f53 5bdad05e93137f1d1a8ae33eff0ffa38 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.miRNA-Seq.S6_L003_R1.T C3N-00309 LSCC miRNA-Seq tumor CPT0008330009 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L003_R1_001.unaln.bam 256781930 BAM S6_L003_R1 submitted_unaligned CPTAC3 e29b59a2-030a-4bdb-b863-cf57d9c88a51 170544cacd266f6a8512ce0c1e8f84b3 {"aliquot_tag": "ALQ_93c0a170", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.miRNA-Seq.T.hg38 C3N-00309 LSCC miRNA-Seq tumor CPT0008330009 dbb776e3-937a-4a4f-adf6-bc44933391cd_mirnaseq_gdc_realn.bam 287096905 BAM harmonized CPTAC3 8f6f7edd-a9f2-4b56-9625-d4a9c8bc874e 4c70a8ec7a29c49caec648e9bf3fbbf0 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.RNA-Seq.chimeric.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.chimeric.gdc_realn.bam 144037730 BAM chimeric harmonized CPTAC3 57e032ae-29bb-49cd-894f-193645df068a 7187d6cd080bdaccecedbdf52642f676 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.RNA-Seq.genomic.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.genomic.gdc_realn.bam 10522043918 BAM genomic harmonized CPTAC3 c0a860bd-83c3-47dc-b57b-227c18c60d89 fd498d9f3462b1c38f81fb5538c56924 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.RNA-Seq.S19_L006_R1.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R1_001.fastq.gz 4517409389 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 93a2a88a-0517-4060-8067-c82235949e9d faa938958cb956f4e8f834baa5acad33 {"aliquot_tag": "ALQ_93c0a170", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.RNA-Seq.S19_L006_R2.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R2_001.fastq.gz 5162929640 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 9b69529e-aff0-41be-90aa-5426cc64828e 4ddbc41bc0928d0715f095ea500a98a3 {"aliquot_tag": "ALQ_93c0a170", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.RNA-Seq.transcriptome.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.transcriptome.gdc_realn.bam 12329223685 BAM transcriptome harmonized CPTAC3 2b021eeb-776a-4fca-a49a-e8b0be4c9903 9af27151af65240c039acef5a8be1708 {"aliquot_tag": "ALQ_93c0a170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.WGS.N C3N-00309 LSCC WGS blood_normal CPT0008370002 CPT0008370002.WholeGenome.RP-1303.bam 77384832298 BAM submitted_aligned CPTAC3 2b7b2c26-d2e2-4345-8c7d-d00d199281c4 132ef9a2823139ff44785b3fcefc2324 {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00309.WGS.N.hg38 C3N-00309 LSCC WGS blood_normal CPT0008370002 1b3e4f90-8f81-493d-a762-5d91682aa002_gdc_realn.bam 115288393197 BAM harmonized CPTAC3 fbd36f17-35ca-4bfe-b795-2fabe3967c6f d56835e4a15352ad810ee1334a5b6b09 {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00309.WGS.T C3N-00309 LSCC WGS tumor CPT0008330006 CPT0008330006.WholeGenome.RP-1303.bam 61907696198 BAM submitted_aligned CPTAC3 74e316d0-43fd-48c8-9467-7a2b0b105b64 8e26e82ee9e4cb7fdeb28c64667c7cbd {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.WGS.T.hg38 C3N-00309 LSCC WGS tumor CPT0008330006 433a77b0-20ee-4b30-850e-a41642e4f30c_gdc_realn.bam 92572352153 BAM harmonized CPTAC3 8dcbc14e-ef8c-4970-bad9-7c667a6c3005 0453ecd5449b63287d0d24d72b62e844 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.WXS.N C3N-00309 LSCC WXS blood_normal CPT0008370002 CPT0008370002.WholeExome.RP-1303.bam 30165781771 BAM submitted_aligned CPTAC3 5ad64c4c-6bf0-423e-829e-c7efcbfdfe72 002bcd574227c6ded5a0fcf44ba690fe {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00309.WXS.N.hg38 C3N-00309 LSCC WXS blood_normal CPT0008370002 1b3e4f90-8f81-493d-a762-5d91682aa002_gdc_realn.bam 41347036650 BAM harmonized CPTAC3 6d2cdd4a-04dc-49ce-ba4a-219ffdbd7eb5 3fc5a81fcb0a9342bc55545379f0319e {"aliquot_tag": "ALQ_f192de38", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00309.WXS.T C3N-00309 LSCC WXS tumor CPT0008330006 CPT0008330006.WholeExome.RP-1303.bam 31494914458 BAM submitted_aligned CPTAC3 32230404-d5dd-40a9-a38b-e1e4d417ea26 a45f155e82588925175a98f068eedcf1 {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00309.WXS.T.hg38 C3N-00309 LSCC WXS tumor CPT0008330006 433a77b0-20ee-4b30-850e-a41642e4f30c_gdc_realn.bam 43105999397 BAM harmonized CPTAC3 05b4b5aa-5c15-42ee-9553-c5eb3e0eb4f0 7c780a20cf6bbc6c90926a7eb2353e0b {"aliquot_tag": "ALQ_37fbce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00310.DUP_458bb307.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0008980009 204367470131_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 10ab103c-43cc-44b2-bc99-9edac0570eae 413fdfb11de0f1220413426323a97998 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_458bb307.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0008980009 204367470131_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 2935886d-0650-4874-86e1-f122b616d882 3d294326594a71e88570efa1075d0e84 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_458bb307.WGS.T C3N-00310 CCRCC WGS tumor CPT0008980009 CPT0008980009.WholeGenome.RP-2158.bam 25391689119 BAM submitted_aligned CPTAC3 1e256f80-ac70-4ede-8a6a-22433abeeb40 66fbb18a8aaaaeb6b00c56d4f6d85874 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_458bb307.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0008980009 5959cbb5-44c4-4969-8451-73e5af3e1ec1_wgs_gdc_realn.bam 74019923289 BAM harmonized CPTAC3 162da098-c0ce-4b31-acf6-0d3998bbf8a9 69a27a634b25bcc2438f6bdcf8dd62f8 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_458bb307.WXS.T C3N-00310 CCRCC WXS tumor CPT0008980009 CPT0008980009.WholeExome.RP-1303.bam 20178068681 BAM submitted_aligned CPTAC3 193b2802-bcf0-4b48-a2ff-c39a06607d0c 47c2a51cda77d3306cf6943e293a0160 {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_458bb307.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0008980009 5959cbb5-44c4-4969-8451-73e5af3e1ec1_wxs_gdc_realn.bam 27902588354 BAM harmonized CPTAC3 ecaca3ef-0aeb-4689-afb4-3765c06a1816 90ea90c79f0ac0abdded471b2408b96f {"aliquot_tag": "DUP_458bb307", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_595c969b.miRNA-Seq.S19_L003_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0009010006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L003_R1_001.unaln.bam 349103158 BAM S19_L003_R1 submitted_unaligned CPTAC3 72910fc8-ead6-4beb-a420-50b5523e381b 66fcd407f61f0c8ffb3f126a3fc7908c {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_595c969b.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0009010006 b0577a99-b78c-4787-a0b6-aad5f34d83ce_mirnaseq_gdc_realn.bam 380825242 BAM harmonized CPTAC3 40edd04a-7a95-4e89-bf7c-5ae8208cd156 f4ebbc5146d8db0729696598735b73fe {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_595c969b.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.chimeric.gdc_realn.bam 185035877 BAM chimeric harmonized CPTAC3 7bcb728b-dfa7-4c20-8ffb-656ecf601943 6f557c7747de8ca61be94efbede9f6f3 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_595c969b.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.genomic.gdc_realn.bam 9078641847 BAM genomic harmonized CPTAC3 dd889250-2b83-4541-a791-545d2a3bf5a3 8591f27d07b946608a3332ec3b2fa750 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_595c969b.RNA-Seq.S28_L007_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R1_001.fastq.gz 4431210554 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 a77fb3b9-271f-41a8-8427-63ffe6958181 a6c030d1396c966b74150a8980564716 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_595c969b.RNA-Seq.S28_L007_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R2_001.fastq.gz 5092745384 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 f39809c1-4a34-4c1d-9f70-acf788723916 1b1febbf6e36dab493b758e3d3765253 {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_595c969b.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.transcriptome.gdc_realn.bam 11140862560 BAM transcriptome harmonized CPTAC3 f98d57f7-68c3-47c8-857f-10110d62eca7 ab228ebc734a57902807a91ff3ed0a2b {"aliquot_tag": "DUP_595c969b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_78eb9ab7.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0008990009 204372030013_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d193607b-b8f4-4e12-8bed-3e0cf0dcb134 180fc14e00eafc04759771ca2e787033 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_78eb9ab7.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0008990009 204372030013_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 ce8fe390-d498-45c7-9152-278042f4d6b7 11408fc72fe40bebe2db7e921a8e6cad {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_78eb9ab7.WGS.T C3N-00310 CCRCC WGS tumor CPT0008990009 CPT0008990009.WholeGenome.RP-2158.bam 26227191772 BAM submitted_aligned CPTAC3 c56ca7fe-8883-4ea6-bcc7-d25e84dc7d1a e7cb552c6dfb1522b6e58b45a4201ed6 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_78eb9ab7.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0008990009 754c5549-1506-4ec1-9c0e-e2f4d25acf2a_wgs_gdc_realn.bam 75561481362 BAM harmonized CPTAC3 f2c679a2-1b1e-449a-ad85-7615853cb7bd f46bdc9bd5f653fceb6b4d088ad4b5f6 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_78eb9ab7.WXS.T C3N-00310 CCRCC WXS tumor CPT0008990009 CPT0008990009.WholeExome.RP-1303.bam 22017554490 BAM submitted_aligned CPTAC3 9278a2a8-1275-4b33-b04a-201bc7c1798a cbd083fa5feb673ae9351f050ab90140 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_78eb9ab7.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0008990009 754c5549-1506-4ec1-9c0e-e2f4d25acf2a_wxs_gdc_realn.bam 30988194547 BAM harmonized CPTAC3 6a9098d8-2f96-4b21-8cf9-5a2503383e20 fa3731bba841d408fb360df893366a46 {"aliquot_tag": "DUP_78eb9ab7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_bc456b58.miRNA-Seq.S16_L001_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0008980013 200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L001_R1_001.unaln.bam 342062318 BAM S16_L001_R1 submitted_unaligned CPTAC3 4cb2c585-25af-43a2-9208-8b8ac150529e 1bbe0711b45899d6ff802e3d3d575fe6 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_bc456b58.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0008980013 4ce7b92f-c2e4-439e-adc3-86aa0477050c_mirnaseq_gdc_realn.bam 371421517 BAM harmonized CPTAC3 652565ae-161b-4d90-8397-2fa75af2f1f6 f5c845a1a4365819bb706d8cedb02983 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_bc456b58.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.chimeric.gdc_realn.bam 166777535 BAM chimeric harmonized CPTAC3 9ed970ce-c37e-4b28-b496-7237ebf04d7b 2c61900eda42da02b4b0ce57aab9129f {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_bc456b58.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.genomic.gdc_realn.bam 6727764397 BAM genomic harmonized CPTAC3 add29852-a04d-4792-bed4-4e7dbdfa19d3 59f46084b4b38bf3237db5f582c288df {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_bc456b58.RNA-Seq.S3_L001_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 3094161507 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 edbfa46e-fc7f-4c79-8a88-b98aa1c6f90b 3a32abe8b5e3d9ce921434b042e6eff8 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_bc456b58.RNA-Seq.S3_L001_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 3750254830 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 7d29bd2f-9762-44ce-be42-89e29861f4ed 815fd59d0393ee5520c3507692a8e3f2 {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_bc456b58.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.transcriptome.gdc_realn.bam 8661270786 BAM transcriptome harmonized CPTAC3 64c7c925-e8a9-40cf-8e60-d9550a568c28 dac8a98aa0411957fb940303d7b8f75b {"aliquot_tag": "DUP_bc456b58", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_c9e38b0a.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0009010009 204367400087_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2d04d4d1-955a-47b6-9ebb-4cf48b245427 6b2262b53c6880b2428f50ead944b70d {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_c9e38b0a.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0009010009 204367400087_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 753810b8-288c-4f1d-9303-e530b93aaf71 3f3a9fce733b2e5e4ce19ad4258fc796 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_c9e38b0a.WGS.T C3N-00310 CCRCC WGS tumor CPT0009010009 CPT0009010009.WholeGenome.RP-2158.bam 28337771142 BAM submitted_aligned CPTAC3 aa98aa7b-da08-4e23-867a-db7ec74e133c 76e0e87a311fe9eea93cac2b5264b1bc {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_c9e38b0a.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0009010009 4c295f09-4400-4a35-9a20-b370b83dc1ff_wgs_gdc_realn.bam 82070786373 BAM harmonized CPTAC3 d8a39a54-942b-459b-8707-df898e915eb6 3db7f8094a93e30a5b4cc11d8db7ddd2 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_c9e38b0a.WXS.T C3N-00310 CCRCC WXS tumor CPT0009010009 CPT0009010009.WholeExome.RP-1303.bam 16694133166 BAM submitted_aligned CPTAC3 1e14c658-b4c2-4350-9eda-510de7317568 974cfe2a48f00ce9a70d2150cc971364 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_c9e38b0a.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0009010009 4c295f09-4400-4a35-9a20-b370b83dc1ff_wxs_gdc_realn.bam 23624010897 BAM harmonized CPTAC3 1ef1d20c-8698-4e03-999d-2a34b6dce794 7b4656fccecddc60e0a6bf8d6b83ebf2 {"aliquot_tag": "DUP_c9e38b0a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_e8548726.miRNA-Seq.S45_L003_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0008990006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCCCGA_S45_L003_R1_001.unaln.bam 243398978 BAM S45_L003_R1 submitted_unaligned CPTAC3 f649e262-2a54-4203-b0d1-72374e1756f4 cfa197cbbe32e12788bf726ed40825c5 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_e8548726.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0008990006 5bace9e7-9920-47e2-a292-bba1cf1b6375_mirnaseq_gdc_realn.bam 269228686 BAM harmonized CPTAC3 3f9b235b-5c5a-4546-8293-1cd353f41813 9df16f9866049f4166beb607b9979632 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_e8548726.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.chimeric.gdc_realn.bam 210633815 BAM chimeric harmonized CPTAC3 b5e1928b-6934-4d2e-bcd0-316274e17c11 2bedc1d6ea2b3a955847b1305f608dd7 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_e8548726.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.genomic.gdc_realn.bam 7183184963 BAM genomic harmonized CPTAC3 c5e9172f-a471-4027-8b9b-0b4602fdc283 fd7383646b3739f36e65e4fa004c75a5 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_e8548726.RNA-Seq.S27_L007_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R1_001.fastq.gz 3466129521 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 89dee074-c120-4cff-8803-2939e845e8d0 b543b4583027331f77ec4a95739520bd {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_e8548726.RNA-Seq.S27_L007_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R2_001.fastq.gz 3995206015 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 e889774e-64a6-4276-9079-c53c0966c003 f99b35d25e9d649ef22f310e77ebc2f3 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.DUP_e8548726.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.transcriptome.gdc_realn.bam 8320888667 BAM transcriptome harmonized CPTAC3 d71a10b5-ed23-4e48-8b2b-9743d501bd01 927da712359085f122b7591328fc2253 {"aliquot_tag": "DUP_e8548726", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.MethArray.Green.A C3N-00310 CCRCC Methylation_Array tissue_normal CPT0009020009 204930640122_R02C01_Grn.idat 13677965 IDAT Green NA CPTAC3 4a425854-307f-4541-bb58-baeb3eda394f c8b9c37a4c97025491c195301520577f {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.MethArray.Green.T C3N-00310 CCRCC Methylation_Array tumor CPT0009000006 202176290105_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0fb9866f-3bfa-4c39-a558-a5bf591ff86f ba010e8f38afef39fb15c7ddba549678 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.MethArray.Red.A C3N-00310 CCRCC Methylation_Array tissue_normal CPT0009020009 204930640122_R02C01_Red.idat 13677965 IDAT Red NA CPTAC3 47e9f062-e458-4654-8fc2-a426138c59c3 f8d5c4a7ea51440abedb92ec50c632a2 {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.MethArray.Red.T C3N-00310 CCRCC Methylation_Array tumor CPT0009000006 202176290105_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 dbce0208-667c-4dd7-9877-c1be02f0af3e a4798679ef5b5164f3a4234e9bf2abc3 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.miRNA-Seq.A.hg38 C3N-00310 CCRCC miRNA-Seq tissue_normal CPT0009020006 0db970d2-e74d-489a-81f1-acf5c6581772_mirnaseq_gdc_realn.bam 182742186 BAM harmonized CPTAC3 3ddb56db-795f-48ee-87df-d849656f0cf4 ec10736bafa7db0ecd91c41eb1ae1af3 {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.miRNA-Seq.S14_L003_R1.T C3N-00310 CCRCC miRNA-Seq tumor CPT0009000009 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L003_R1_001.unaln.bam 219903758 BAM S14_L003_R1 submitted_unaligned CPTAC3 58246253-8553-4073-a559-e166e362ae75 3c25883c86a9daee397f85f0fb3c14ec {"aliquot_tag": "ALQ_f483a2ba", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.miRNA-Seq.S36_L004_R1.A C3N-00310 CCRCC miRNA-Seq tissue_normal CPT0009020006 181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L004_R1_001.unaln.bam 164839957 BAM S36_L004_R1 submitted_unaligned CPTAC3 69613f20-8f09-4980-8725-0bd6dca12361 7fd4bc05c996a45b80212050186a983f {"aliquot_tag": "ALQ_1efcec4b", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0009000009 0773eaae-dfd3-4ec4-a031-09bdcffe3e23_mirnaseq_gdc_realn.bam 240649743 BAM harmonized CPTAC3 ef200408-1b00-4cee-89ff-9d584fb5f07c 58e2114ebf58f2dc9df2f1729dfca857 {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.RNA-Seq.chimeric.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.chimeric.gdc_realn.bam 83034842 BAM chimeric harmonized CPTAC3 1c7f97f6-2243-4569-bd58-d24e121f2e7f 12547b0431d225bf2f0e7e829c128e20 {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.chimeric.gdc_realn.bam 114348129 BAM chimeric harmonized CPTAC3 f151179b-9e99-4bf3-b97f-463cae38d70a e7f6ac929340f8e103e286064bdb5152 {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.RNA-Seq.genomic.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.genomic.gdc_realn.bam 8710463686 BAM genomic harmonized CPTAC3 828b4ebe-de28-4291-a87c-caece1022dd2 5e548440d42a625d83309056939646bb {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.genomic.gdc_realn.bam 8276113536 BAM genomic harmonized CPTAC3 89261b2e-41ce-4c58-9846-c8b9bd7c5eb5 abc1ba9265bfaf4ca2c00fc89d28974c {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.RNA-Seq.S47_L005_R1.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R1_001.fastq.gz 4000290124 FASTQ S47_L005_R1 submitted_unaligned CPTAC3 1fb79f60-316b-4f6b-a76e-7e5656251b23 73340743efc002a10fad520dd6733e81 {"aliquot_tag": "ALQ_1efcec4b", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.RNA-Seq.S47_L005_R2.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R2_001.fastq.gz 4199768745 FASTQ S47_L005_R2 submitted_unaligned CPTAC3 947345b1-e728-46f6-90aa-523c8d93319c bd359ef86682e56b99f7baefd1eee774 {"aliquot_tag": "ALQ_1efcec4b", "sample": "S47", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.RNA-Seq.S8_L005_R1.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R1_001.fastq.gz 3879277533 FASTQ S8_L005_R1 submitted_unaligned CPTAC3 600887e4-6350-43bd-88d8-18fde761b376 f668ebdea6ca99405d03a356ba606b9f {"aliquot_tag": "ALQ_f483a2ba", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.RNA-Seq.S8_L005_R2.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R2_001.fastq.gz 4190573018 FASTQ S8_L005_R2 submitted_unaligned CPTAC3 76ada607-cb88-45df-9f9d-081d65b4fd98 f6937bd25f36e932aa705fea542f7610 {"aliquot_tag": "ALQ_f483a2ba", "sample": "S8", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.RNA-Seq.transcriptome.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.transcriptome.gdc_realn.bam 9386579310 BAM transcriptome harmonized CPTAC3 6698a504-54b7-4ceb-937f-78362aaaa3d8 f0eead221efd9f4d346a95435eb993a3 {"aliquot_tag": "ALQ_1efcec4b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.transcriptome.gdc_realn.bam 12087048501 BAM transcriptome harmonized CPTAC3 bbda8381-fb47-476e-9b02-597728c18741 4acc35f844d9339d58bd9578ed0fe8e7 {"aliquot_tag": "ALQ_f483a2ba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.WGS.A C3N-00310 CCRCC WGS tissue_normal CPT0009020009 CPT0009020009.WholeGenome.RP-1303.bam 56370255974 BAM submitted_aligned CPTAC3 278af3f5-738a-455b-88ce-35198b2c2bd3 e25180a6a764eec4efab64bf8bf0b794 {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.WGS.A.hg38 C3N-00310 CCRCC WGS tissue_normal CPT0009020009 ebba4dd0-7cf4-4b4f-9886-bb48ade6b588_wgs_gdc_realn.bam 83264264292 BAM harmonized CPTAC3 d35a6db6-a200-4083-af00-30b1de25d491 9012ebcb47845234722531c064f3f620 {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.WGS.N C3N-00310 CCRCC WGS blood_normal CPT0009030002 CPT0009030002.WholeGenome.RP-1303.bam 73026168543 BAM submitted_aligned CPTAC3 807cccc0-fd2b-4ac9-b206-edda79a74329 c5fc8340f639d9e1c4f69bcb17575e58 {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00310.WGS.N.hg38 C3N-00310 CCRCC WGS blood_normal CPT0009030002 46d15fa0-e832-47c8-a5ba-a1caca39b8ad_gdc_realn.bam 106783168790 BAM harmonized CPTAC3 2df558b7-8ba4-4409-944d-239833b51a3d bb842351bd5f2ff57fd376c34f362bc3 {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00310.WGS.T C3N-00310 CCRCC WGS tumor CPT0009000006 CPT0009000006.WholeGenome.RP-1303.bam 53952100630 BAM submitted_aligned CPTAC3 c03bddc2-6995-4ec9-b9f2-f9eb3fee4b56 b20a9911d6d38ceb74ef3383873f53b6 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.WGS.T.hg38 C3N-00310 CCRCC WGS tumor CPT0009000006 7f7054b1-e9ef-4275-af89-9926f65014f8_gdc_realn.bam 77669044027 BAM harmonized CPTAC3 cbd72e8b-44d3-4463-9f99-f048254fda5c 545447c2b6ff93b959adfde91b41d3f5 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.WXS.A C3N-00310 CCRCC WXS tissue_normal CPT0009020009 CPT0009020009.WholeExome.RP-1303.bam 34829747771 BAM submitted_aligned CPTAC3 b727208f-6a94-497b-8fe9-675bf1ff141e d588fc56438b955800dfe4816ec357ef {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.WXS.A.hg38 C3N-00310 CCRCC WXS tissue_normal CPT0009020009 ebba4dd0-7cf4-4b4f-9886-bb48ade6b588_wxs_gdc_realn.bam 47741770301 BAM harmonized CPTAC3 acc3d8e4-8a01-42ed-b06a-8e76cff2eb7d 731dccde2f410a5a85989f230451309b {"aliquot_tag": "ALQ_8e43f1da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00310.WXS.N C3N-00310 CCRCC WXS blood_normal CPT0009030002 CPT0009030002.WholeExome.RP-1303.bam 25162838991 BAM submitted_aligned CPTAC3 3adc0ffd-0717-4d60-81ec-978bcab16d87 c92f8e18a4f98e19f9e3caac5174eecb {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00310.WXS.N.hg38 C3N-00310 CCRCC WXS blood_normal CPT0009030002 46d15fa0-e832-47c8-a5ba-a1caca39b8ad_gdc_realn.bam 34014493164 BAM harmonized CPTAC3 3c0d4139-3d67-4100-b190-ac5c97bc946a ac9cf2063ec66e20a51ccea6ad6601a6 {"aliquot_tag": "ALQ_24f101e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00310.WXS.T C3N-00310 CCRCC WXS tumor CPT0009000006 CPT0009000006.WholeExome.RP-1303.bam 30451564623 BAM submitted_aligned CPTAC3 fc577c64-b332-4a29-ad71-6b1277ca3597 a2bc6892d4b4d062d6723b14ad44057e {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00310.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0009000006 7f7054b1-e9ef-4275-af89-9926f65014f8_gdc_realn.bam 41036873499 BAM harmonized CPTAC3 331e5643-c098-412e-9f29-0ed4671fec5a 91c530ff89e75c518a36de684f284600 {"aliquot_tag": "ALQ_643cbf2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_103047a.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009040009 204367490090_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 52188731-67b0-4405-a0e8-5001576d41bc 4b06e2d56253f3a59befcd35bcd6be44 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_103047a.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009040009 204367490090_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 543cf62d-362e-4395-a383-c4253971eb2d 8d9e3ac717fb1aaf98df48af00a3c959 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_103047a.WGS.T C3N-00312 CCRCC WGS tumor CPT0009040009 CPT0009040009.WholeGenome.RP-2158.bam 28780050950 BAM submitted_aligned CPTAC3 6972d4f2-49f9-493d-846d-c5934f6aed6b 0de4fc8a1c7fa468e995bff185e45678 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_103047a.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009040009 ac12c913-71a6-4af2-9340-7b5c1b64bb55_wgs_gdc_realn.bam 83677823890 BAM harmonized CPTAC3 b843b329-9fdf-4920-804a-47bc90fbb20a 118e288001bebddd19c074ae70248ef7 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_103047a.WXS.T C3N-00312 CCRCC WXS tumor CPT0009040009 CPT0009040009.WholeExome.RP-1303.bam 17837253418 BAM submitted_aligned CPTAC3 3436fb1f-fb2e-4330-8d77-2c3bf5c12e31 d4a74ac71dab0b98c81381a9450e728e {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_103047a.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009040009 ac12c913-71a6-4af2-9340-7b5c1b64bb55_wxs_gdc_realn.bam 24280374294 BAM harmonized CPTAC3 832bdcc8-b171-4eb2-971a-d4dd2fb3f500 d3f7d3481259c5bbab0840aef08df640 {"aliquot_tag": "DUP_103047a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_3c632dca.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009050009 204367490030_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dca3c811-fa4e-4e2f-955c-a60a4cabadf1 83b553493e1ae3fbfe09514a93ce3983 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_3c632dca.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009050009 204367490030_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 ced49832-886c-4cef-89f7-61a15f1bd27a 37670094580f2cf2bc4f5f238de55678 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_3c632dca.WGS.T C3N-00312 CCRCC WGS tumor CPT0009050009 CPT0009050009.WholeGenome.RP-2158.bam 21489888417 BAM submitted_aligned CPTAC3 242417c2-421b-45b5-aa55-be6b4f34a5cd 2e418d77cf7e8cde9ecf92e88c7c66d1 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_3c632dca.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009050009 c6c421fa-2669-4299-9d03-fc8f023dd813_wgs_gdc_realn.bam 62748608564 BAM harmonized CPTAC3 1baaf74c-11e5-4da2-b768-b95d8aeebc62 03cc0a1acfc1578327e954b5069302a5 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_3c632dca.WXS.T C3N-00312 CCRCC WXS tumor CPT0009050009 CPT0009050009.WholeExome.RP-1303.bam 20117508241 BAM submitted_aligned CPTAC3 3cad3f2c-e19b-4dd8-b6b1-84e39dc24362 486b965ea5b30ad1639b8ed8ec4b3da8 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_3c632dca.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009050009 c6c421fa-2669-4299-9d03-fc8f023dd813_wxs_gdc_realn.bam 28177333319 BAM harmonized CPTAC3 45f5e8b0-7e55-4a10-aee2-3a40fce0bcc4 dca4582229378d5e3e6bb8d3b2c52149 {"aliquot_tag": "DUP_3c632dca", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_46a37eaa.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009070009 204372030074_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f17b27ca-76a6-4555-a890-fc216df9d8e9 7cd932daa96d7de2c799f0cdcc38874a {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_46a37eaa.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009070009 204372030074_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 5e0ead7a-1343-4f2a-b6f5-cfd71886ee68 37447fc1e59bf1116581b9d0821146af {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_46a37eaa.WGS.T C3N-00312 CCRCC WGS tumor CPT0009070009 CPT0009070009.WholeGenome.RP-2158.bam 30395980652 BAM submitted_aligned CPTAC3 faf73648-0822-4297-96d9-3de62c164e99 8d4f6d73483fa8c26d0688de9f71ee02 {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_46a37eaa.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009070009 9e2cd80f-546f-47a7-9724-9fca5eb1b672_wgs_gdc_realn.bam 87822858220 BAM harmonized CPTAC3 10c34d19-af57-43a7-8c06-a3b9022a2e6b f7f6a75e3f6c9849454f8f84efe55131 {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_46a37eaa.WXS.T C3N-00312 CCRCC WXS tumor CPT0009070009 CPT0009070009.WholeExome.RP-1303.bam 26896315528 BAM submitted_aligned CPTAC3 113736a3-5f5c-4928-912d-ef13aba2933e 58afffe17ddc76d09d192cb611c3c04d {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_46a37eaa.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009070009 9e2cd80f-546f-47a7-9724-9fca5eb1b672_wxs_gdc_realn.bam 35727364045 BAM harmonized CPTAC3 3481b6f5-8bfa-4941-95d7-6503abc5c4bf 0e98f241a40db240450e8d504a24f27b {"aliquot_tag": "DUP_46a37eaa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_91bc19eb.miRNA-Seq.S20_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009040006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L003_R1_001.unaln.bam 282391239 BAM S20_L003_R1 submitted_unaligned CPTAC3 bbc3a36a-316c-45b6-8251-476e111cefd3 c6e527a026b862311026915e9a095405 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_91bc19eb.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009040006 06467550-def2-403d-9aa3-7a3a34f02dde_mirnaseq_gdc_realn.bam 307826790 BAM harmonized CPTAC3 83c105f2-09e8-4cc4-84c8-6dda3fb29b10 ba6de599dfe0f674ff37342243ffcda5 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_91bc19eb.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.chimeric.gdc_realn.bam 149053172 BAM chimeric harmonized CPTAC3 6157ba96-fd01-4a8d-a365-b8d645960ab9 833a11d8beb28b63f31b8159610673e6 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_91bc19eb.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.genomic.gdc_realn.bam 8892050908 BAM genomic harmonized CPTAC3 39e65a7b-3c72-4ea9-a9d0-8bc00732baca 41cfacc16dfe8121dc865940ffe3b010 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_91bc19eb.RNA-Seq.S25_L007_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R1_001.fastq.gz 4289173913 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 d070b7e8-b692-4b38-a0c0-18d789197848 a0fcd2011ae7998b6f9038df384118b7 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_91bc19eb.RNA-Seq.S25_L007_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R2_001.fastq.gz 5129448695 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 11e4bcb1-1181-41c9-b4c6-3770f2c0e93e 284493faaedaff218c37bd184482f5c5 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_91bc19eb.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.transcriptome.gdc_realn.bam 11204889135 BAM transcriptome harmonized CPTAC3 c3fd8ea0-42b2-4a20-91c7-db9c750fbf78 8660e3e1f9a1f31e0b7a2ab940d5ebf0 {"aliquot_tag": "DUP_91bc19eb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_acdc305b.miRNA-Seq.S39_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009050006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATCACG_S39_L003_R1_001.unaln.bam 179291781 BAM S39_L003_R1 submitted_unaligned CPTAC3 f0adc4d0-a1f3-4619-9fac-b9e1b4e77899 af2760d17ac8bd8d57b7b59c9f7f169c {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_acdc305b.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009050006 5eb8e0e9-113e-4c3b-a377-23a3d4f2b9f1_mirnaseq_gdc_realn.bam 197189293 BAM harmonized CPTAC3 d4009a80-f39a-482e-a5dd-7cf139b6f87d 6a067f96334ec84489c35cc9da8cb9dc {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_acdc305b.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.chimeric.gdc_realn.bam 38526134 BAM chimeric harmonized CPTAC3 e84e285b-a8ef-4768-8e9f-5e41ee60951e 2253cc464c5ad25648a7249b79ee9e79 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_acdc305b.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.genomic.gdc_realn.bam 8653829028 BAM genomic harmonized CPTAC3 35de06b6-e159-4c37-8e74-b6dcc208b233 b8d9be94e11a72e264a94af3fe189cae {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_acdc305b.RNA-Seq.S30_L008_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R1_001.fastq.gz 4216064401 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 84b165b3-e4c3-40a6-a2b2-be3eb9d6a968 6b5bc4b4e1bed0c28fa65d344cc277a8 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_acdc305b.RNA-Seq.S30_L008_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R2_001.fastq.gz 4835120977 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 03a57298-110d-45a0-b3ab-d86ab4b11fc5 6fceb331c67c31871e07503b5ead06b4 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_acdc305b.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.transcriptome.gdc_realn.bam 11379932007 BAM transcriptome harmonized CPTAC3 1b2354b5-ad22-4da5-b48b-fcaf04a85ad2 a8677afff03282a46ee0fbe11353edc4 {"aliquot_tag": "DUP_acdc305b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_d61c633b.miRNA-Seq.S47_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009070006 200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L003_R1_001.unaln.bam 238687856 BAM S47_L003_R1 submitted_unaligned CPTAC3 68f4c186-2b34-4e5a-9aa5-eff96f1d2a6a 15d5f981909a5b9f5716b6f73c785cc5 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_d61c633b.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009070006 a21e894a-5524-4657-bfd3-bdfae8c7c46b_mirnaseq_gdc_realn.bam 259906942 BAM harmonized CPTAC3 fdc1c5a9-b39b-4e9a-a4bb-c6d37a4b9c06 6242e9ec6b0f1074534d853dcd9ade09 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_d61c633b.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.chimeric.gdc_realn.bam 53048031 BAM chimeric harmonized CPTAC3 b3de330c-7c22-4e02-ac9b-2d52fee8bb7e d471a41aab8e1fc92aa1f3cc0e8c3940 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_d61c633b.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.genomic.gdc_realn.bam 8264769099 BAM genomic harmonized CPTAC3 c9dd9ba9-0209-4765-a76f-76fd8fd049e0 e3de49e1cfed9bc8e333c585d6519583 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_d61c633b.RNA-Seq.S29_L008_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R1_001.fastq.gz 4094831538 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 df7a710b-9006-452d-a356-5300dff4bb75 e51a87b1f0b4c4946f032fbd3fd2e697 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_d61c633b.RNA-Seq.S29_L008_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R2_001.fastq.gz 4648781248 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 ef8985af-993b-4c92-8651-d8e0102c4605 bd9d0f46976d283aec123ab1382fd6ab {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.DUP_d61c633b.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.transcriptome.gdc_realn.bam 11193751888 BAM transcriptome harmonized CPTAC3 74e7fb19-cfed-491c-9227-a29720c807c2 8de698590b65a62d44709913a71bef73 {"aliquot_tag": "DUP_d61c633b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.MethArray.Green.A C3N-00312 CCRCC Methylation_Array tissue_normal CPT0009080009 204930640023_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 5c8fed49-1977-42f3-bb50-29dcf039e1f4 285aa49a14a101ab3e30c3303fd7c3cd {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00312.MethArray.Green.T C3N-00312 CCRCC Methylation_Array tumor CPT0009060006 202184990057_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 03a40d78-0a3b-421a-8fd9-1074982d5f1e 99d05e9eaaf254d2118a4273106b74bd {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.MethArray.Red.A C3N-00312 CCRCC Methylation_Array tissue_normal CPT0009080009 204930640023_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 c7c4ab84-02ac-4c65-ade4-5b3d21ce449d 8845b08558b45d264e51291edc4ee2d9 {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00312.MethArray.Red.T C3N-00312 CCRCC Methylation_Array tumor CPT0009060006 202184990057_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b10a6b5-4970-4349-8a42-8bed4a4adc10 ecb73105fd337ed18c25ab23584e48f7 {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.miRNA-Seq.S16_L003_R1.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009060009 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L003_R1_001.unaln.bam 229803384 BAM S16_L003_R1 submitted_unaligned CPTAC3 d34d878b-0f51-4821-bff7-f3bd9780eeaa e0e76950cf40ed51957b00131f5359ac {"aliquot_tag": "ALQ_7bc3571a", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009060009 68ebfe5b-e4b9-4a70-92f1-3a2a455e3934_mirnaseq_gdc_realn.bam 246278840 BAM harmonized CPTAC3 d9233492-ff75-4528-8ddc-1ac40197b297 76336c85f8e2f61407fc7c986cc93877 {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.chimeric.gdc_realn.bam 187175014 BAM chimeric harmonized CPTAC3 b3f83a8d-09d4-4d3f-8716-a531837f2096 85b9474c81d1ea6ed482480684ddad21 {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.genomic.gdc_realn.bam 8850515841 BAM genomic harmonized CPTAC3 667fdb3c-a487-47da-820f-959c71652c66 c10c2e0a2d45eb624b88307c5f5b1eea {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.RNA-Seq.S10_L005_R1.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R1_001.fastq.gz 4379179377 FASTQ S10_L005_R1 submitted_unaligned CPTAC3 b6017636-1179-4a19-976d-8a4ff24a550d 74b849adc1ede7c4b4893a8070a2f950 {"aliquot_tag": "ALQ_7bc3571a", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.RNA-Seq.S10_L005_R2.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R2_001.fastq.gz 4745246185 FASTQ S10_L005_R2 submitted_unaligned CPTAC3 73499178-bbb1-43cf-969b-120c4503f709 aeddc28d905945417f212f866a04e012 {"aliquot_tag": "ALQ_7bc3571a", "sample": "S10", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.transcriptome.gdc_realn.bam 11227723582 BAM transcriptome harmonized CPTAC3 da9a1c91-be98-466f-96e1-1f1de2055d82 05d5ba704219afdec90c500776deb5a4 {"aliquot_tag": "ALQ_7bc3571a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.WGS.A C3N-00312 CCRCC WGS tissue_normal CPT0009080009 CPT0009080009.WholeGenome.RP-1303.bam 57491964931 BAM submitted_aligned CPTAC3 bb6f3c20-02f3-4b65-8a1d-af8ebb69653d a790efb65d4a803e5c5a323098dfea3a {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00312.WGS.A.hg38 C3N-00312 CCRCC WGS tissue_normal CPT0009080009 c2ccc81a-f952-4d49-bfa9-81f43c97a55b_wgs_gdc_realn.bam 84005456632 BAM harmonized CPTAC3 4fc6bb78-163a-4d98-939e-a881515a7141 b051cd91271fef7cbad2848d687c7bcf {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00312.WGS.N C3N-00312 CCRCC WGS blood_normal CPT0009090002 CPT0009090002.WholeGenome.RP-1303.bam 75795064521 BAM submitted_aligned CPTAC3 1b90b59a-e549-4969-a52c-7c36ea7a78b8 26f419db9c90c158f85b0524a6d5b412 {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00312.WGS.N.hg38 C3N-00312 CCRCC WGS blood_normal CPT0009090002 b502fe65-a50d-45c9-9c87-c57c81394f30_gdc_realn.bam 111197998280 BAM harmonized CPTAC3 3c6976b4-77d3-4ac6-973e-877e47e04751 1d8c7ffa2dc08f55fa391efb6aabc116 {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00312.WGS.T C3N-00312 CCRCC WGS tumor CPT0009060006 CPT0009060006.WholeGenome.RP-1303.bam 63668836437 BAM submitted_aligned CPTAC3 2a5a4906-5780-48bd-bbf1-17110a10c377 b7d6916678cdcc8a7745c9f2ae4f911d {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.WGS.T.hg38 C3N-00312 CCRCC WGS tumor CPT0009060006 74487670-deb3-44f1-aaa3-d8a7b82d7290_gdc_realn.bam 92498432143 BAM harmonized CPTAC3 92029368-0c43-4491-ab8e-9ab163e243dc 4e02fcef8153b5c37920eb4747534fe3 {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.WXS.A C3N-00312 CCRCC WXS tissue_normal CPT0009080009 CPT0009080009.WholeExome.RP-1303.bam 33262592561 BAM submitted_aligned CPTAC3 394eac00-cf4e-4abd-9494-5a943d8da899 446f48ff1034b9220315649cfd76b8ed {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00312.WXS.A.hg38 C3N-00312 CCRCC WXS tissue_normal CPT0009080009 c2ccc81a-f952-4d49-bfa9-81f43c97a55b_wxs_gdc_realn.bam 44731506826 BAM harmonized CPTAC3 864c3194-6c89-45af-a121-a4df4618a708 74ebdb1fc359c1f1cf04daaf786231e6 {"aliquot_tag": "ALQ_c4f3e97b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00312.WXS.N C3N-00312 CCRCC WXS blood_normal CPT0009090002 CPT0009090002.WholeExome.RP-1303.bam 25351330957 BAM submitted_aligned CPTAC3 560922b1-d466-414d-86b5-e0676e0f7fe7 4d8742e4f3054cf53764129c69f41371 {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00312.WXS.N.hg38 C3N-00312 CCRCC WXS blood_normal CPT0009090002 b502fe65-a50d-45c9-9c87-c57c81394f30_gdc_realn.bam 34531912142 BAM harmonized CPTAC3 aeeaa154-4a21-4e54-b88a-e6e9117aaf99 cf292d35b5648b91d358608041feb0ca {"aliquot_tag": "ALQ_6e411943", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00312.WXS.T C3N-00312 CCRCC WXS tumor CPT0009060006 CPT0009060006.WholeExome.RP-1303.bam 19543443251 BAM submitted_aligned CPTAC3 e4c75fc4-8601-40ff-ae2c-823306e7e334 fe435adc6659a26f06643c2a26937227 {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00312.WXS.T.hg38 C3N-00312 CCRCC WXS tumor CPT0009060006 74487670-deb3-44f1-aaa3-d8a7b82d7290_gdc_realn.bam 26465918875 BAM harmonized CPTAC3 ea179973-3472-4360-9eb1-e59eae58ffd3 f39784879bc03571c4781739bd012ccf {"aliquot_tag": "ALQ_eb7c4a8b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.MethArray.Green.T C3N-00313 CCRCC Methylation_Array tumor CPT0011410009 202184900127_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 d448c5ad-6dce-4cc6-891b-f47055c470bc 74f671e34cf4ad533b6a716328c43e49 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.MethArray.Red.T C3N-00313 CCRCC Methylation_Array tumor CPT0011410009 202184900127_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 04277bdb-8244-477b-8182-fcea33d259c7 c823e9953670d1af53b6b38eab94b92a {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.miRNA-Seq.S22_L001_R1.T C3N-00313 CCRCC miRNA-Seq tumor CPT0011410006 180924_UNC31-K00269_0154_AHWTMLBBXX_TGACCA_S22_L001_R1_001.unaln.bam 217518871 BAM S22_L001_R1 submitted_unaligned CPTAC3 bb664030-e25d-401e-8697-9ab53d056a61 ca5e8558ca40cf916bb5f42793bed611 {"aliquot_tag": "ALQ_3d889a74", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.miRNA-Seq.T.hg38 C3N-00313 CCRCC miRNA-Seq tumor CPT0011410006 aa0a94e0-5a77-472a-b7ce-03d14824b8f2_mirnaseq_gdc_realn.bam 237206126 BAM harmonized CPTAC3 c2d6725c-96ba-4e68-a5f6-0778d173ad2b 47f839b127e33935fb9d5d1d11918f47 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.RNA-Seq.chimeric.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.chimeric.gdc_realn.bam 58296975 BAM chimeric harmonized CPTAC3 526030a8-27e8-41bd-9281-25890123a8e1 ac8f112be829726906d51b8b4ed2ad59 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.RNA-Seq.genomic.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.genomic.gdc_realn.bam 6935536095 BAM genomic harmonized CPTAC3 27ebcdee-4b37-4369-aa3f-5d18d03b40e6 3aa62784a48b3037aebbcc360250ad59 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.RNA-Seq.S1_L001_R1.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R1_001.fastq.gz 3321955238 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 888407ac-0be1-41a3-a05f-b76beba5d59c b74d3b8cfa08017f50926410168ee771 {"aliquot_tag": "ALQ_3d889a74", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.RNA-Seq.S1_L001_R2.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R2_001.fastq.gz 3621783704 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 d0634734-0ce4-431a-8003-94d6f61fcc26 be7e692adf38018569f8851cc52e961c {"aliquot_tag": "ALQ_3d889a74", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.RNA-Seq.transcriptome.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.transcriptome.gdc_realn.bam 8553107440 BAM transcriptome harmonized CPTAC3 2f4671c8-dbe7-4d8b-b80a-5513fe564415 ed0f37679e4dcc50298987c31ebd8667 {"aliquot_tag": "ALQ_3d889a74", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.WGS.N C3N-00313 CCRCC WGS blood_normal CPT0012040002 CPT0012040002.WholeGenome.RP-1303.bam 61278918380 BAM submitted_aligned CPTAC3 71572d05-76e3-400a-829e-8c525cb9b272 6d904bbe542d67a82d834ae88a614a4e {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00313.WGS.N.hg38 C3N-00313 CCRCC WGS blood_normal CPT0012040002 630eaa51-5b9c-4f0e-82c7-2494669109ad_gdc_realn.bam 86581602388 BAM harmonized CPTAC3 965262a1-98a2-4d8b-b9a2-f4267c2a9355 668d152a4f539a91f44b30173f24ac20 {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00313.WGS.T C3N-00313 CCRCC WGS tumor CPT0011410009 CPT0011410009.WholeGenome.RP-1303.bam 71440766520 BAM submitted_aligned CPTAC3 f7df522c-9611-4fde-9672-26bdf8abdecd a69ad7ee439a35e68232ea944a601d00 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.WGS.T.hg38 C3N-00313 CCRCC WGS tumor CPT0011410009 cd7a208e-7acf-4a1b-8e35-b4a5c726ab4a_gdc_realn.bam 104834986234 BAM harmonized CPTAC3 c522dddc-d560-4396-bdd0-ffe7b53fdae1 0578f1d7eed9ff38dc4e0f9350c20af5 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.WXS.N C3N-00313 CCRCC WXS blood_normal CPT0012040002 CPT0012040002.WholeExome.RP-1303.bam 23268469112 BAM submitted_aligned CPTAC3 2694f1f5-3894-4455-890a-4fda5a4f96d1 98a17b31c592bf83464e24f9c8ad6299 {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00313.WXS.N.hg38 C3N-00313 CCRCC WXS blood_normal CPT0012040002 630eaa51-5b9c-4f0e-82c7-2494669109ad_gdc_realn.bam 31867438668 BAM harmonized CPTAC3 382284ba-b429-42fc-ae04-0e5633278996 1d772b32131e26988d25b3bb14fcdf19 {"aliquot_tag": "ALQ_587c8996", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00313.WXS.T C3N-00313 CCRCC WXS tumor CPT0011410009 CPT0011410009.WholeExome.RP-1303.bam 22967043940 BAM submitted_aligned CPTAC3 310f956c-9bd0-4570-bd87-d11163df6556 456934ccba5c8244923b3c2d92fa31cf {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00313.WXS.T.hg38 C3N-00313 CCRCC WXS tumor CPT0011410009 cd7a208e-7acf-4a1b-8e35-b4a5c726ab4a_gdc_realn.bam 31517312842 BAM harmonized CPTAC3 15118886-6fb8-4af7-b05b-b1005fbee322 66c89bd88b0d594ad41a4592adca0968 {"aliquot_tag": "ALQ_ad3787e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_1aa061e.miRNA-Seq.S29_L002_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012070016 200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L002_R1_001.unaln.bam 276790761 BAM S29_L002_R1 submitted_unaligned CPTAC3 0447b26b-9012-463b-b112-7849fb478c36 ed8959f3b163ec4fbbda148bca276862 {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_1aa061e.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012070016 8a1fe468-f020-4eb3-9587-e3c1febef7d4_mirnaseq_gdc_realn.bam 302244831 BAM harmonized CPTAC3 c046f722-7b91-44b6-872c-f056ebade73a db8353bfdc11ce58a243fc32448372ed {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_1aa061e.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.chimeric.gdc_realn.bam 80445759 BAM chimeric harmonized CPTAC3 e5d3a432-25be-4258-b99b-5e70c6e955d9 9ff4550b8c4b7f3950688ea25e4efb63 {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_1aa061e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.genomic.gdc_realn.bam 8221215602 BAM genomic harmonized CPTAC3 84428c0a-ad5d-42ba-be3b-642dec13e29d b5a97823d449b9df25ac2d48f323b92e {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_1aa061e.RNA-Seq.S18_L005_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 3676262046 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 56c717c7-89d0-4cd8-a638-13cf9d2bbbf9 20f7a8f41f85707839764aeb019f0a0a {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_1aa061e.RNA-Seq.S18_L005_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4386649159 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 585db18c-cf35-4df6-a337-bd5b93acd691 0d240c9db42eec4e9952672bd874e69b {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_1aa061e.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.transcriptome.gdc_realn.bam 8871692125 BAM transcriptome harmonized CPTAC3 bf4d0054-5687-42dd-b494-5078f19a51aa 22f511bd946cbb370f0e787a6f4890be {"aliquot_tag": "DUP_1aa061e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_3ba7ebb7.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012060012 204372030014_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 016a3f0a-e25b-46f2-a4ee-e11437fff544 09cfaf4f0cb4f7cb91f7d82b65d7461b {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_3ba7ebb7.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012060012 204372030014_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 7a55380e-03d8-4c7f-ba72-d04075453e71 248f0a55ae275dca59a37464ee22a4bf {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_3ba7ebb7.WGS.T C3N-00314 CCRCC WGS tumor CPT0012060012 CPT0012060012.WholeGenome.RP-2158.bam 20983152407 BAM submitted_aligned CPTAC3 70930a9b-f91a-4e34-ac4a-e049dfc51d73 0a068ed7ffa296b036bbbfd74eeebb75 {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_3ba7ebb7.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012060012 2d8ad3b1-9758-4bc7-b2a2-fd8a9550ca16_wgs_gdc_realn.bam 61992282602 BAM harmonized CPTAC3 57d4b830-9f35-4867-9a75-56e57a981b63 1e00b17c37ab7bd67e4e5519c9ec3ace {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_3ba7ebb7.WXS.T C3N-00314 CCRCC WXS tumor CPT0012060012 CPT0012060012.WholeExome.RP-1303.bam 19612326488 BAM submitted_aligned CPTAC3 d7455846-ff2c-4a9e-9a1e-2fd4a57fa4f1 e336758aa2202151bd61fa53981a1d52 {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_3ba7ebb7.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012060012 2d8ad3b1-9758-4bc7-b2a2-fd8a9550ca16_wxs_gdc_realn.bam 26588707002 BAM harmonized CPTAC3 cd1eab3a-b5e5-4c4c-a858-4f1d011ff347 baab2fed92d382a21932359283fa72db {"aliquot_tag": "DUP_3ba7ebb7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_9fce93bd.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012070011 204930630086_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 67aa0d5a-fbac-42c3-8893-c21061ce9274 daf3174507c85c8cddd13db522218b6d {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_9fce93bd.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012070011 204930630086_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 5ac39506-d764-4738-a660-7a35af498162 9c76b4df7e3c66b054e8583cff4673d1 {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_9fce93bd.WGS.T C3N-00314 CCRCC WGS tumor CPT0012070011 CPT0012070011.WholeGenome.RP-2158.bam 23125514641 BAM submitted_aligned CPTAC3 ce29a452-97f2-4625-bdad-a7b490dc50ae 28ac003e8f960663e2f3574deb7ea2af {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_9fce93bd.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012070011 e684014d-b553-455b-9c6d-9a845e2913d0_wgs_gdc_realn.bam 68197260527 BAM harmonized CPTAC3 5efbadc0-c7b7-4721-aec7-f25e03b1f251 c1624c052482b1d4f297090ccc217a6b {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_9fce93bd.WXS.T C3N-00314 CCRCC WXS tumor CPT0012070011 CPT0012070011.WholeExome.RP-1303.bam 24857399548 BAM submitted_aligned CPTAC3 7c95044c-e391-48db-bdd2-b62452f4663c b593d6fb5ffeda83a820ad87c5f477a1 {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_9fce93bd.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012070011 e684014d-b553-455b-9c6d-9a845e2913d0_wxs_gdc_realn.bam 34624281535 BAM harmonized CPTAC3 f9ba5fc6-0805-4505-b151-54ce3b3d53c9 210df19855b3f7d5d256bd4438f6cc51 {"aliquot_tag": "DUP_9fce93bd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_b56e037e.miRNA-Seq.S41_L005_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012060009 200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L005_R1_001.unaln.bam 245374097 BAM S41_L005_R1 submitted_unaligned CPTAC3 8369d9f5-5d8a-4267-8ead-eec2a46f9589 9e23bc984438e5db96c1d922977be60f {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_b56e037e.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012060009 7ec69b1c-b582-42c6-aa0a-90359916d5b9_mirnaseq_gdc_realn.bam 268079605 BAM harmonized CPTAC3 a73668e4-caad-4069-baa8-357126783f29 d519b4e61d4ea5153128d3feee2c1bef {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_b56e037e.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.chimeric.gdc_realn.bam 240084679 BAM chimeric harmonized CPTAC3 eeca01bc-34a6-4dcf-8dd6-bff7abade56f c62260dab46f640eae14d1659aedf493 {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_b56e037e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.genomic.gdc_realn.bam 7611587497 BAM genomic harmonized CPTAC3 b764fd41-0e3e-49f6-ba91-fac5c79c38f4 482672ded610ca62dfaea3ad4836a05b {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_b56e037e.RNA-Seq.S36_L006_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R1_001.fastq.gz 3443358409 FASTQ S36_L006_R1 submitted_unaligned CPTAC3 a7e3bd23-6487-47ac-a2a2-7d2d12f94240 c4d60186f533ac855ec50e905790c716 {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_b56e037e.RNA-Seq.S36_L006_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R2_001.fastq.gz 4052867811 FASTQ S36_L006_R2 submitted_unaligned CPTAC3 4925b454-cfe4-4889-8753-5bbf48c6ad61 57a7659a2a6e526ce9981818bafa19fa {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_b56e037e.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.transcriptome.gdc_realn.bam 7934663645 BAM transcriptome harmonized CPTAC3 d24e4c7c-40af-4eef-a67c-f0da52b5bdac 98726711bedcd89f83d94dbeed610e1c {"aliquot_tag": "DUP_b56e037e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_f2ce79ae.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012050009 204367490048_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7bf56131-57e1-481a-8134-d154e9717a3c bd882d8da2cb41b447468706bbd4f249 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_f2ce79ae.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012050009 204367490048_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 b3966211-6115-4064-886e-5d7ef6f50456 9016aae05b80a24b7e8df218cf827a49 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_f2ce79ae.WGS.T C3N-00314 CCRCC WGS tumor CPT0012050009 CPT0012050009.WholeGenome.RP-2158.bam 27336648108 BAM submitted_aligned CPTAC3 c8789117-2e7b-4b44-9cd5-faa7cd03e64e 8f55bdd68359d87879d11f142e141b1f {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_f2ce79ae.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012050009 61a1bd09-ad37-4441-8a13-c7a14beb786a_wgs_gdc_realn.bam 81573818032 BAM harmonized CPTAC3 eb632e37-7b03-4fa7-9868-6149cc14275b 429326c356492af854f8a3cca85b2feb {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_f2ce79ae.WXS.T C3N-00314 CCRCC WXS tumor CPT0012050009 CPT0012050009.WholeExome.RP-1303.bam 45924930918 BAM submitted_aligned CPTAC3 bb6f1faf-ecc8-464d-8ca7-0e1d55aad8dd ee942c140f615b32decfcd23d6820164 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_f2ce79ae.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012050009 61a1bd09-ad37-4441-8a13-c7a14beb786a_wxs_gdc_realn.bam 64235015996 BAM harmonized CPTAC3 86119262-6336-4f9d-b940-a694672965f4 6f6164ef46dfec84ac63afa457b0eb99 {"aliquot_tag": "DUP_f2ce79ae", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_fb783585.miRNA-Seq.S31_L002_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012050005 200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L002_R1_001.unaln.bam 182961498 BAM S31_L002_R1 submitted_unaligned CPTAC3 281233ae-ba2f-49a8-8092-9647f268701e ee65a27bb14c1a7c0b5aa478cbb21e5d {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_fb783585.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012050005 3ac66e76-e7e9-4c37-aedf-a92ad6a4ff1f_mirnaseq_gdc_realn.bam 202747221 BAM harmonized CPTAC3 144f754c-70c7-4717-80d7-9930ecbb75b3 6141a26308491570eb6d23cf0971340b {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_fb783585.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.chimeric.gdc_realn.bam 46110621 BAM chimeric harmonized CPTAC3 45972d5b-f7a7-4cec-b828-e3f48ce9ff5c c468144c1b336346d141aba64eae857d {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_fb783585.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.genomic.gdc_realn.bam 9318434702 BAM genomic harmonized CPTAC3 d2588708-a06d-43a6-af42-ee888a5ae229 165b9a6f2ff543f3f6679da61719ce3a {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_fb783585.RNA-Seq.S13_L004_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 4263636590 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 a046126a-c032-452a-bb72-6d2f0a1c2df3 1cd981a2c70299407f9ab4f691d53220 {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_fb783585.RNA-Seq.S13_L004_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 4968549870 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 b3fedb93-436d-4d78-9e32-444b0ae2c98a d92581a79f809b992cb29f7a6bab6c78 {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.DUP_fb783585.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.transcriptome.gdc_realn.bam 10316563363 BAM transcriptome harmonized CPTAC3 7948e940-994b-49ce-bd2c-69efa75a9c1a 80c5423275afb63280d5d4c9d1a5c70a {"aliquot_tag": "DUP_fb783585", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.MethArray.Green.A C3N-00314 CCRCC Methylation_Array tissue_normal CPT0012090009 204930630040_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2b632613-9f2f-4946-aa58-b105168fff5c 30a1b360d9a1f030964b884670466394 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.MethArray.Green.T C3N-00314 CCRCC Methylation_Array tumor CPT0012080009 202184990057_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8525ba4b-702d-40e4-a786-ca992b7e451a 1cc5b96c6faffb9a737677e89402692e {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.MethArray.Red.A C3N-00314 CCRCC Methylation_Array tissue_normal CPT0012090009 204930630040_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 db2c16c7-5047-4f5d-8def-0f826f99e290 837ffdffd50018203bd26fa1d503a92e {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.MethArray.Red.T C3N-00314 CCRCC Methylation_Array tumor CPT0012080009 202184990057_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 d06d4677-0561-4e19-ba21-a1c173934849 6d75fb4c8430d7dd9f494a3936026f29 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.miRNA-Seq.A.hg38 C3N-00314 CCRCC miRNA-Seq tissue_normal CPT0012090013 e19b6006-2801-4c1e-9c53-6f7d2be7e76c_mirnaseq_gdc_realn.bam 265996077 BAM harmonized CPTAC3 cd74fbf5-a0f4-4b52-8f8e-ad7a2edfae20 d2232018f4c20092f478282d7169881b {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.miRNA-Seq.S14_L006_R1.A C3N-00314 CCRCC miRNA-Seq tissue_normal CPT0012090013 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L006_R1_001.unaln.bam 245330773 BAM S14_L006_R1 submitted_unaligned CPTAC3 61f2f83f-8526-4ecb-baaf-a4b37cf26485 235a72a41d2f817d28dd9c15bbc1bc97 {"aliquot_tag": "ALQ_cef04cf0", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.miRNA-Seq.S3_L001_R1.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012080006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAAAAG_S3_L001_R1_001.unaln.bam 338571909 BAM S3_L001_R1 submitted_unaligned CPTAC3 bf46b333-83d7-4de6-abd2-f21ac7aae3c9 8404306d844cd3134f36307ba62ad5bb {"aliquot_tag": "ALQ_9ae1a08e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012080006 2115ca6a-507e-49b7-a1ad-91a21373a32e_mirnaseq_gdc_realn.bam 365102772 BAM harmonized CPTAC3 7cf14d87-daa6-4f8f-b72b-d05cca3d6cbb 67471949db4dff7f891a36d0c8a89fe5 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.RNA-Seq.chimeric.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.chimeric.gdc_realn.bam 84208705 BAM chimeric harmonized CPTAC3 e5269016-10ed-4b92-9db1-db8eb27353f6 af9aba642129d1bec8652b32262e10ab {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.chimeric.gdc_realn.bam 62192412 BAM chimeric harmonized CPTAC3 c1904750-fea8-47e7-8b53-3afae963abc8 9055608dee25da2c2360d06f1e04cd66 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.RNA-Seq.genomic.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.genomic.gdc_realn.bam 10296757393 BAM genomic harmonized CPTAC3 fddb320f-86a1-4e54-af8d-b81c670ea708 47c36356e4e50c9a94d2dbc7c27d093b {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.genomic.gdc_realn.bam 5572900303 BAM genomic harmonized CPTAC3 75f17447-e096-4f85-8f98-0fa8bfb6866f 08fda3305067b82d3569b99c7164dbc0 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.RNA-Seq.S20_L005_R1.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R1_001.fastq.gz 2472197253 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 96b6f505-80d0-448f-820d-06892f3487cb 7319fde4a600747f70d7297c6c662993 {"aliquot_tag": "ALQ_9ae1a08e", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.RNA-Seq.S20_L005_R2.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R2_001.fastq.gz 2736831042 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 01dbf604-7941-4bd4-9671-8d1ee780ee7a caa1f62cc70b60ec40a22a9fb09d0a4a {"aliquot_tag": "ALQ_9ae1a08e", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.RNA-Seq.S38_L007_R1.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R1_001.fastq.gz 4282128674 FASTQ S38_L007_R1 submitted_unaligned CPTAC3 29804040-bbf0-4206-9e79-6150a33fb325 96881e19ab7ee62e2e03ee7b014b45c3 {"aliquot_tag": "ALQ_cef04cf0", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.RNA-Seq.S38_L007_R2.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R2_001.fastq.gz 4601135914 FASTQ S38_L007_R2 submitted_unaligned CPTAC3 b49b449f-cc83-4690-9346-a6b4ec327900 7a47b7873f7c141263a383c7f256707b {"aliquot_tag": "ALQ_cef04cf0", "sample": "S38", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.RNA-Seq.transcriptome.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.transcriptome.gdc_realn.bam 8595119063 BAM transcriptome harmonized CPTAC3 df7f0000-b1db-4ad3-9c1d-53bfb567ba82 8e564115d3e7873ba9120feb8c595507 {"aliquot_tag": "ALQ_cef04cf0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.transcriptome.gdc_realn.bam 6303688009 BAM transcriptome harmonized CPTAC3 3f5a8589-f2fd-4124-83bd-d19fabcf44dc 9d8933d9e57fde9539beaa37d1ed1412 {"aliquot_tag": "ALQ_9ae1a08e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.WGS.A C3N-00314 CCRCC WGS tissue_normal CPT0012090009 CPT0012090009.WholeGenome.RP-1303.bam 73654891996 BAM submitted_aligned CPTAC3 c33681ed-d81e-48f2-981b-fc8a93fb8bf0 26c719da303783bf10d8aebcd5415282 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.WGS.A.hg38 C3N-00314 CCRCC WGS tissue_normal CPT0012090009 5a265e02-4edf-4eb8-aaac-1899ecd02c1a_wgs_gdc_realn.bam 107987906517 BAM harmonized CPTAC3 7c433af8-8820-4572-9476-7c3893ac2268 da6483a2a46c909ce8a4edf7f92952c3 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.WGS.N C3N-00314 CCRCC WGS blood_normal CPT0012150002 CPT0012150002.WholeGenome.RP-1303.bam 59000555430 BAM submitted_aligned CPTAC3 896378b1-e500-46fb-b9f1-29a7fa572ac7 32092b930c9ce74096d151b0381e58ba {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00314.WGS.N.hg38 C3N-00314 CCRCC WGS blood_normal CPT0012150002 21e53bba-f1a1-42c0-b026-cc40f5bb2b01_gdc_realn.bam 85741332148 BAM harmonized CPTAC3 24db41e0-c40a-4293-b808-618eba12cc03 85028686b57b77b8257d3000e06156f1 {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00314.WGS.T C3N-00314 CCRCC WGS tumor CPT0012080009 CPT0012080009.WholeGenome.RP-1303.bam 67396987712 BAM submitted_aligned CPTAC3 00fb0bff-d567-4c4c-8723-3d59ef0a5dae 7dcc4e0ec4d0817f096679ca5ca3fa37 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.WGS.T.hg38 C3N-00314 CCRCC WGS tumor CPT0012080009 8bfede7e-2578-413c-bea6-447f26b9081d_gdc_realn.bam 99103885152 BAM harmonized CPTAC3 59a04947-d61a-4278-9e16-12fbfab1c6dd 2eec23e1d994fb2bbd3cc215e202e8e6 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.WXS.A C3N-00314 CCRCC WXS tissue_normal CPT0012090009 CPT0012090009.WholeExome.RP-1303.bam 34480578020 BAM submitted_aligned CPTAC3 739a92c9-2ef2-48cf-92a9-7b0bb9e3fad6 d3a2a7a0c875caa64137769f3a40ac35 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.WXS.A.hg38 C3N-00314 CCRCC WXS tissue_normal CPT0012090009 5a265e02-4edf-4eb8-aaac-1899ecd02c1a_wxs_gdc_realn.bam 47317251033 BAM harmonized CPTAC3 4cc44a73-fda5-4103-83a5-e2c11c6fe72f f92423ff2757e342b05c8c3a1b412ee8 {"aliquot_tag": "ALQ_373e94af", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00314.WXS.N C3N-00314 CCRCC WXS blood_normal CPT0012150002 CPT0012150002.WholeExome.RP-1303.bam 29318133654 BAM submitted_aligned CPTAC3 a9f7f138-49fd-4012-86c3-91fe2d963c04 ac1ef1a758c9fcf400acfda196068889 {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00314.WXS.N.hg38 C3N-00314 CCRCC WXS blood_normal CPT0012150002 21e53bba-f1a1-42c0-b026-cc40f5bb2b01_gdc_realn.bam 40420145067 BAM harmonized CPTAC3 15cff317-7193-49d0-ba9f-cd4e363c564f 4f9429318cd3d4ae67a8a7d77069fdf3 {"aliquot_tag": "ALQ_ae407383", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00314.WXS.T C3N-00314 CCRCC WXS tumor CPT0012080009 CPT0012080009.WholeExome.RP-1303.bam 22943919203 BAM submitted_aligned CPTAC3 3370a5d5-cde6-4a17-aa4f-022ce4a2ba95 5d9244e22d1d003a0bed11646e931d96 {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00314.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012080009 8bfede7e-2578-413c-bea6-447f26b9081d_gdc_realn.bam 31511944675 BAM harmonized CPTAC3 ef10ada7-bbcd-4238-be14-931764592a11 4a269391251d265c68bb212ccc06f89b {"aliquot_tag": "ALQ_a5ebd1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.ANN_15b4289d.WGS.N C3N-00315 CCRCC WGS blood_normal CPT0012240002 CPT0012240002.WholeGenome.RP-1303.bam 62155508227 BAM submitted_aligned CPTAC3 5bc6879c-0b43-4e73-ad3e-9de9776e75aa 4985ac67e15887adca93fa4f0faec056 {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00315.ANN_15b4289d.WGS.N.hg38 C3N-00315 CCRCC WGS blood_normal CPT0012240002 b9b589dd-9f9d-4b4d-82cd-048378b3101a_gdc_realn.bam 90812352968 BAM harmonized CPTAC3 45243e54-a9f8-4db6-b6dd-20baf0df9705 ac8b00e27f89a429eb2369bb67bd4405 {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00315.ANN_15b4289d.WXS.N C3N-00315 CCRCC WXS blood_normal CPT0012240002 CPT0012240002.WholeExome.RP-1303.bam 24457273067 BAM submitted_aligned CPTAC3 4472e814-ca77-4871-9556-b6ff2503d700 c70edbd9356943bcde0f0f5a1837a22b {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00315.ANN_15b4289d.WXS.N.hg38 C3N-00315 CCRCC WXS blood_normal CPT0012240002 b9b589dd-9f9d-4b4d-82cd-048378b3101a_gdc_realn.bam 33497000704 BAM harmonized CPTAC3 68af6901-66a3-4912-8f6f-6d32e00889aa 964e718e9a99fbc3a538d06569f9cbd7 {"aliquot_tag": "ANN_15b4289d", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00315.ANN_c1026eba.MethArray.Green.T C3N-00315 CCRCC Methylation_Array tumor CPT0012180009 202184990008_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c6963688-370d-4407-864c-6c84f235e36b b5c22010b921e797c18f7c56074d770e {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.ANN_c1026eba.MethArray.Red.T C3N-00315 CCRCC Methylation_Array tumor CPT0012180009 202184990008_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5ce362d-c736-44bb-a34b-9aa9274904e6 e7705317c41b3bb0f80bced6f6908790 {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.ANN_c1026eba.WGS.T C3N-00315 CCRCC WGS tumor CPT0012180009 CPT0012180009.WholeGenome.RP-1303.bam 61828501333 BAM submitted_aligned CPTAC3 8b4793e8-d3b8-4ad0-9237-d6e9b36a2017 689681e61ce6835cbd72fcf8496ae63b {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.ANN_c1026eba.WGS.T.hg38 C3N-00315 CCRCC WGS tumor CPT0012180009 3e8cabbe-d332-47b7-b864-438a8f28f62a_gdc_realn.bam 90584739284 BAM harmonized CPTAC3 0b50e4c3-271b-4c40-a795-80b3e8ab79b4 00eb67988fb705cb50714a4303e72fc7 {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.ANN_c1026eba.WXS.T C3N-00315 CCRCC WXS tumor CPT0012180009 CPT0012180009.WholeExome.RP-1303.bam 23719768591 BAM submitted_aligned CPTAC3 4922eee1-32f4-456d-bda1-e5e92399d691 fcf0fb0caee0d316f036119217843651 {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.ANN_c1026eba.WXS.T.hg38 C3N-00315 CCRCC WXS tumor CPT0012180009 3e8cabbe-d332-47b7-b864-438a8f28f62a_gdc_realn.bam 32566983424 BAM harmonized CPTAC3 aa702074-3079-4da7-a98f-c1fedd424dd3 be10b0a6525c03c40e948f911b7a680b {"aliquot_tag": "ANN_c1026eba", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.miRNA-Seq.S23_L002_R1.T C3N-00315 CCRCC miRNA-Seq tumor CPT0012180006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAACTA_S23_L002_R1_001.unaln.bam 197235238 BAM S23_L002_R1 submitted_unaligned CPTAC3 e9467102-2797-4055-ab4e-9453b76bba62 885a462d4af9e16da472faef38b13b15 {"aliquot_tag": "ALQ_51bd732b", "sample": "S23", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.miRNA-Seq.T.hg38 C3N-00315 CCRCC miRNA-Seq tumor CPT0012180006 d1f23e30-8d2c-47aa-96af-a3c21b10203a_mirnaseq_gdc_realn.bam 210365606 BAM harmonized CPTAC3 182ecb2b-b008-4a67-88f3-badf39c4fbc6 56cd4dfbf380559ba487bdb4cbb15a70 {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.RNA-Seq.chimeric.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.chimeric.gdc_realn.bam 83008008 BAM chimeric harmonized CPTAC3 73545d64-182b-4d38-b719-43dc554415bd 1b80ade61c32954aac8d1364435685b1 {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.RNA-Seq.genomic.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.genomic.gdc_realn.bam 9935887951 BAM genomic harmonized CPTAC3 eb142ecb-0d39-43f1-a249-13f465036a17 a4367d1ffa554d8a79ae44e23a1364bf {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.RNA-Seq.S17_L005_R1.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 4635214588 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 0cc4eef5-1c17-47c0-b859-7f6cffcfd680 7aafb59e1b8450971813ded457fb0a13 {"aliquot_tag": "ALQ_51bd732b", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.RNA-Seq.S17_L005_R2.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 4819981461 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 08d6200f-2755-4eff-b345-7fa1a68d82dc 470a8edbe139edf61c09307742523b59 {"aliquot_tag": "ALQ_51bd732b", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00315.RNA-Seq.transcriptome.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.transcriptome.gdc_realn.bam 12420701554 BAM transcriptome harmonized CPTAC3 06d27fff-1f9e-4783-8990-677321aaae74 4d4bd84a4c21f188f66306778504440b {"aliquot_tag": "ALQ_51bd732b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_766f4abc.MethArray.Green.T C3N-00317 CCRCC Methylation_Array tumor CPT0012260012 204367490084_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 ea72b685-9d14-4e7a-a516-c23636272d33 cae28665f4c3112fdf6dcf25021df424 {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_766f4abc.MethArray.Red.T C3N-00317 CCRCC Methylation_Array tumor CPT0012260012 204367490084_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 32c86870-9493-4cf8-8665-e43f8053bd7f f7b0b901dd4ee29f2fbfa88772c7f3b8 {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_766f4abc.WGS.T C3N-00317 CCRCC WGS tumor CPT0012260012 CPT0012260012.WholeGenome.RP-2158.bam 40006681574 BAM submitted_aligned CPTAC3 16115974-3222-479b-ad7b-cb1d1ff1b1ee ee42c07f1da71ec03dd659ed40f12ead {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_766f4abc.WGS.T.hg38 C3N-00317 CCRCC WGS tumor CPT0012260012 891d0152-de40-4250-b27a-52cefa7a6193_wgs_gdc_realn.bam 120493214690 BAM harmonized CPTAC3 8d918483-16be-44bb-92a4-3832254e2ea6 e81dfc63575dcfa287330b1e396aef3d {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_766f4abc.WXS.T C3N-00317 CCRCC WXS tumor CPT0012260012 CPT0012260012.WholeExome.RP-1303.bam 21414609107 BAM submitted_aligned CPTAC3 382f5908-1d87-492e-b46b-26f7487543e1 00047d30d7c6aa7c60c915d031012d4c {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_766f4abc.WXS.T.hg38 C3N-00317 CCRCC WXS tumor CPT0012260012 891d0152-de40-4250-b27a-52cefa7a6193_wxs_gdc_realn.bam 29273662099 BAM harmonized CPTAC3 1a3f59cc-f69d-4878-8d87-7af4ef3fe221 baab179612508ef2122d4b1db5f159cc {"aliquot_tag": "DUP_766f4abc", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_f8a6a275.miRNA-Seq.S37_L005_R1.T C3N-00317 CCRCC miRNA-Seq tumor CPT0012260009 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L005_R1_001.unaln.bam 315393603 BAM S37_L005_R1 submitted_unaligned CPTAC3 ebc93d18-aa19-470b-b44c-c9e001c77f20 4df83f9bc89bb2bae8439fce665bf133 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_f8a6a275.miRNA-Seq.T.hg38 C3N-00317 CCRCC miRNA-Seq tumor CPT0012260009 5f64e2de-2fb3-4ae7-9862-6074a82e2d22_mirnaseq_gdc_realn.bam 343273350 BAM harmonized CPTAC3 d5315c94-24a9-4540-9c67-ce4577f23e32 cf055a0177437a2aafb51798d4085f65 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_f8a6a275.RNA-Seq.chimeric.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.chimeric.gdc_realn.bam 149914560 BAM chimeric harmonized CPTAC3 ef45d407-9c51-4061-a02f-663081e62300 b8015078d5c0e4feb07e148277202e67 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_f8a6a275.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.genomic.gdc_realn.bam 9441302845 BAM genomic harmonized CPTAC3 baff8b63-a61c-4ec2-a825-093ce38a8290 98cffbfbb988c20307c6f28c2000205b {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_f8a6a275.RNA-Seq.S40_L007_R1.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R1_001.fastq.gz 4446715920 FASTQ S40_L007_R1 submitted_unaligned CPTAC3 3d8eeeba-2b19-46ac-8047-b76312922225 a18fb0500fb1f597471987bbd8cc82e8 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_f8a6a275.RNA-Seq.S40_L007_R2.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R2_001.fastq.gz 5173788304 FASTQ S40_L007_R2 submitted_unaligned CPTAC3 bc68e827-b6e2-4c3c-a12a-12110a8661bf 79e960dbb45e66e133c40ac23e71915c {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.DUP_f8a6a275.RNA-Seq.transcriptome.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.transcriptome.gdc_realn.bam 12323354871 BAM transcriptome harmonized CPTAC3 3acb0850-c2a7-4df7-8f33-ecd5f2666f40 71d7a5a3050dcc2cba16efe842907db0 {"aliquot_tag": "DUP_f8a6a275", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.MethArray.Green.A C3N-00317 CCRCC Methylation_Array tissue_normal CPT0012290009 204930640041_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 998e112c-bbf8-45a6-a254-bfc82873c9b7 60fb1dec3f6a57a1dcf645938996ebbf {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00317.MethArray.Green.T C3N-00317 CCRCC Methylation_Array tumor CPT0012280009 202184990013_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ecde6749-94d6-41bb-a9ec-76697089e5f1 d042caf608dc9e399d5114270676755b {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.MethArray.Red.A C3N-00317 CCRCC Methylation_Array tissue_normal CPT0012290009 204930640041_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 f73c1f78-3e25-45c6-9c85-861a51ec169e 5cde08034706661c4adb7b803214574c {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00317.MethArray.Red.T C3N-00317 CCRCC Methylation_Array tumor CPT0012280009 202184990013_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 208c0120-9952-41fb-b499-f8fc0c79b2f1 c0e759208a76fb22ef818d64e84f6a1f {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.miRNA-Seq.S6_L003_R1.T C3N-00317 CCRCC miRNA-Seq tumor CPT0012280006 181113_UNC31-K00269_0164_AH23NNBBXY_CACCGG_S6_L003_R1_001.unaln.bam 203594470 BAM S6_L003_R1 submitted_unaligned CPTAC3 f3f34b0a-61ce-439d-b46b-df17d7673979 dd6b32fa66710da023df56ff95b939e2 {"aliquot_tag": "ALQ_d7290185", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.miRNA-Seq.T.hg38 C3N-00317 CCRCC miRNA-Seq tumor CPT0012280006 4e1883fe-7867-4204-8543-ee4e9c5378d0_mirnaseq_gdc_realn.bam 220565141 BAM harmonized CPTAC3 3a2d115a-e5d9-4aa8-b669-3920eb2e2617 9f5162dfa9b126605ca2aed7ff9ace31 {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.RNA-Seq.chimeric.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.chimeric.gdc_realn.bam 61497293 BAM chimeric harmonized CPTAC3 1a182c61-f2aa-4533-8baf-c9b8bb8dbf7d 8b10431bc1d7f9bc8cdfe830fea27eac {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.genomic.gdc_realn.bam 7518549298 BAM genomic harmonized CPTAC3 92f02ad9-402a-4210-944e-777004cf4a99 ee26d83b88fbd84ae58d7ff73c3ea0c7 {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.RNA-Seq.S6_L007_R1.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R1_001.fastq.gz 3673590014 FASTQ S6_L007_R1 submitted_unaligned CPTAC3 2a4fb96b-e68b-402e-94dd-402cc33de691 b9c7e103998cdabfa744c89527e2aad0 {"aliquot_tag": "ALQ_d7290185", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.RNA-Seq.S6_L007_R2.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R2_001.fastq.gz 3990008813 FASTQ S6_L007_R2 submitted_unaligned CPTAC3 21c429bb-a631-4195-be11-c6b6773ddc2d 41142e1dcac8a70c2e77b8555ed8cac4 {"aliquot_tag": "ALQ_d7290185", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.RNA-Seq.transcriptome.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.transcriptome.gdc_realn.bam 10602153212 BAM transcriptome harmonized CPTAC3 88c84b03-e5eb-4341-892c-7c6dea9d0f52 b6c47800d43467e34aaebd8f081c7dcb {"aliquot_tag": "ALQ_d7290185", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.WGS.A C3N-00317 CCRCC WGS tissue_normal CPT0012290009 CPT0012290009.WholeGenome.RP-1303.bam 62528489541 BAM submitted_aligned CPTAC3 41602fac-e7dc-4df4-b74b-b88fc94b03d3 8e43c896166c11d0d981afa15e618384 {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00317.WGS.A.hg38 C3N-00317 CCRCC WGS tissue_normal CPT0012290009 67b95338-b369-4e42-9b0f-ac7d5cae97fc_wgs_gdc_realn.bam 90789444765 BAM harmonized CPTAC3 bcfe5567-6e70-47d0-ad80-e54cf37771a9 e63fda0e1ca5d82477c8d1d360087a5f {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00317.WGS.N C3N-00317 CCRCC WGS blood_normal CPT0012350002 CPT0012350002.WholeGenome.RP-1303.bam 85582316446 BAM submitted_aligned CPTAC3 bdbddbbd-1182-4994-8d34-e50d9bfadc7c 8ef6090cc8509b764b4400339e9e763a {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00317.WGS.N.hg38 C3N-00317 CCRCC WGS blood_normal CPT0012350002 9fb1577a-959f-46aa-be5d-f09257637647_gdc_realn.bam 121510278216 BAM harmonized CPTAC3 726b25d8-ff56-457a-96a1-1ffc27b2cfff e9ac8607094f209900e6366c1b4f2e75 {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00317.WGS.T C3N-00317 CCRCC WGS tumor CPT0012280009 CPT0012280009.WholeGenome.RP-1303.bam 72172701941 BAM submitted_aligned CPTAC3 95ba7629-4cdc-4fa1-a2a7-3355b1051fab cca9004cbbdf204599c8bd6163215054 {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.WGS.T.hg38 C3N-00317 CCRCC WGS tumor CPT0012280009 0984ed95-1b7c-4757-9a97-4333c5c229e5_gdc_realn.bam 106360759636 BAM harmonized CPTAC3 9343e025-d1a5-4c79-b7ec-6a0f32a8e002 8f1b3d0a2e6c348f62a5525c37581b5e {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.WXS.A C3N-00317 CCRCC WXS tissue_normal CPT0012290009 CPT0012290009.WholeExome.RP-1303.bam 36221436608 BAM submitted_aligned CPTAC3 0715f7c5-06c3-4d1b-baf9-a015cce18fa4 890fbc2e574ab9aaaaad85ec3a987067 {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00317.WXS.A.hg38 C3N-00317 CCRCC WXS tissue_normal CPT0012290009 67b95338-b369-4e42-9b0f-ac7d5cae97fc_wxs_gdc_realn.bam 48717442545 BAM harmonized CPTAC3 d56540c0-1df0-40a2-9314-d10e677192fc da507d9f404cfadfcf67075536da4b18 {"aliquot_tag": "ALQ_7af635a4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00317.WXS.N C3N-00317 CCRCC WXS blood_normal CPT0012350002 CPT0012350002.WholeExome.RP-1303.bam 23314273978 BAM submitted_aligned CPTAC3 7ce73731-31fd-43e0-8334-e3fe959ddc77 7b2108c4b2253f818caee0a7a4c97323 {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00317.WXS.N.hg38 C3N-00317 CCRCC WXS blood_normal CPT0012350002 9fb1577a-959f-46aa-be5d-f09257637647_gdc_realn.bam 32022229435 BAM harmonized CPTAC3 6628688a-fa7f-4977-835c-b8eb6007c760 039eb5be43d1ba4839853d85e5e6edf3 {"aliquot_tag": "ALQ_e388d288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00317.WXS.T C3N-00317 CCRCC WXS tumor CPT0012280009 CPT0012280009.WholeExome.RP-1303.bam 28280433884 BAM submitted_aligned CPTAC3 8b89c2fa-2f6a-44df-8e31-e745987d7475 fca542827272bbd6675be5e7581fedb6 {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00317.WXS.T.hg38 C3N-00317 CCRCC WXS tumor CPT0012280009 0984ed95-1b7c-4757-9a97-4333c5c229e5_gdc_realn.bam 38506250909 BAM harmonized CPTAC3 376a79e0-5220-485d-bedd-5f0e79a3da32 f1d4683afff0c8c5c745323b6c80f6b4 {"aliquot_tag": "ALQ_47961c14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_1c75d220.miRNA-Seq.S22_L002_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012380006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L002_R1_001.unaln.bam 284601693 BAM S22_L002_R1 submitted_unaligned CPTAC3 2f18d805-7d6d-42af-8070-e90c8168c479 d5cf651bc2eb3d9c5a7332ced02cfed0 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_1c75d220.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012380006 8cdc2aca-acce-4d10-bbc1-a447325909a0_mirnaseq_gdc_realn.bam 319705369 BAM harmonized CPTAC3 c071e737-84f9-4ebf-bf67-72c1e8d680e8 fc595300a3bcd8a9114285e416c3547a {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_1c75d220.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.chimeric.gdc_realn.bam 82564128 BAM chimeric harmonized CPTAC3 e06d8fab-06cf-4ab1-b31d-ad22420dbe8f 74fae14cce7c3a4f535b8c89bceed7a1 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_1c75d220.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.genomic.gdc_realn.bam 7724049130 BAM genomic harmonized CPTAC3 27d5cedd-9486-4452-a62e-859e42735875 14a0402b322d645e00e6da469d47e785 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_1c75d220.RNA-Seq.S12_L003_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 3679918907 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 66919a0f-2958-4676-b23f-60171879bb9a 25d9290804dcfc8209d969f391c3d6fb {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_1c75d220.RNA-Seq.S12_L003_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4334583810 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 20ec54c5-b82b-4421-b92b-cb45fda6e36b 46daa572b295ea84a335151c44b99f3c {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_1c75d220.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.transcriptome.gdc_realn.bam 10591450782 BAM transcriptome harmonized CPTAC3 d64cbd5f-e9e0-4598-adf6-fdbce376cfa3 639a26ea4882b5092c2a9dc6b2c5e828 {"aliquot_tag": "DUP_1c75d220", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_2115fb90.miRNA-Seq.S28_L002_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012390006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L002_R1_001.unaln.bam 225705483 BAM S28_L002_R1 submitted_unaligned CPTAC3 629eec19-2b96-4d77-a82a-6d11c994777c 17bd70557a727173f919d27af718aba6 {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_2115fb90.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012390006 7c5ac62e-3b63-46b8-bc92-5c9b3518cf71_mirnaseq_gdc_realn.bam 252781474 BAM harmonized CPTAC3 ef556d14-e961-41bd-a2b1-6fd929161639 0a11b054e67572eab835c72210577fa7 {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_2115fb90.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.chimeric.gdc_realn.bam 70539508 BAM chimeric harmonized CPTAC3 42632c2a-6525-40de-ad10-67ed3f81e4db 1512798dcd759f8a9ff3d2f2ac0bb36a {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_2115fb90.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.genomic.gdc_realn.bam 9648926143 BAM genomic harmonized CPTAC3 23b8e1e6-7892-472b-a165-38af8b87a474 a68fefcb92f9ce3891aff6cf61582cde {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_2115fb90.RNA-Seq.S9_L003_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4571285022 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 f69ff481-fb60-4571-ae1e-5532b83b10be 8ff84f7dfcbdef934d9d8faf92349287 {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_2115fb90.RNA-Seq.S9_L003_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 5356526609 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 55661e0f-51e4-4c2d-a719-28620deeb87b fb8c05341b28ff91c6e545438458b5fa {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_2115fb90.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.transcriptome.gdc_realn.bam 13265768933 BAM transcriptome harmonized CPTAC3 071a5c68-95f7-4149-96eb-5d41237b3b9a 9561ea692dad1927d483ad32d766a62c {"aliquot_tag": "DUP_2115fb90", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_33fa71d0.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012360009 204367400148_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ad8ae0db-4798-4334-9196-bc864a27edac 186f8088fbd343a67a4f1299b7dbfd61 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_33fa71d0.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012360009 204367400148_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 a5138284-3fff-40a5-894b-1e2e5a3e6a8f 7fb0c2badbc56e734a70e2b4cf7874fa {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_33fa71d0.WGS.T C3N-00320 CCRCC WGS tumor CPT0012360009 CPT0012360009.WholeGenome.RP-2158.bam 27701671239 BAM submitted_aligned CPTAC3 e17f2abd-2165-489c-a83f-33944b257220 4fcc3139a927f2cd4c3468aa584d17b3 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_33fa71d0.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012360009 1c0ce28b-5b5a-4673-9c87-c8ad76d3d376_wgs_gdc_realn.bam 82817973510 BAM harmonized CPTAC3 df4035c8-163a-4432-8b9d-ae4411909bfa 58750abd8f9039ddfafc53e86926b655 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_33fa71d0.WXS.T C3N-00320 CCRCC WXS tumor CPT0012360009 CPT0012360009.WholeExome.RP-1303.bam 21949719188 BAM submitted_aligned CPTAC3 e4b1b670-7d8b-4743-b2de-623a9ce087aa c80ce3d3559b5331b8df5468e1160d26 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_33fa71d0.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012360009 1c0ce28b-5b5a-4673-9c87-c8ad76d3d376_wxs_gdc_realn.bam 29955180612 BAM harmonized CPTAC3 d18eaf8a-f429-4428-9396-479b7ca175fe b9218ff78b8120fb42c6df3167fd8ad0 {"aliquot_tag": "DUP_33fa71d0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_8ccacfb1.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012380009 204367490057_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 16825a68-7794-42e2-b1a9-0c8665cbce63 57f3e5a987242420c087695f1c72d280 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_8ccacfb1.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012380009 204367490057_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 a522833c-7654-4cb3-8647-49aa4ea9191a 9165db2d66834608cec4022429782fb5 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_8ccacfb1.WGS.T C3N-00320 CCRCC WGS tumor CPT0012380009 CPT0012380009.WholeGenome.RP-2158.bam 30793503011 BAM submitted_aligned CPTAC3 ef2b56e3-6169-4298-a115-4fafe99f6f62 03064c7efcae56f4567791c014537005 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_8ccacfb1.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012380009 1632a6bf-ad50-4049-ae37-69d390da80ad_wgs_gdc_realn.bam 93283241837 BAM harmonized CPTAC3 85dac21e-1fef-451e-b39f-8e80cb2c1fe8 842848a3fb3a867291c44cf46cba773c {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_8ccacfb1.WXS.T C3N-00320 CCRCC WXS tumor CPT0012380009 CPT0012380009.WholeExome.RP-1303.bam 23791812935 BAM submitted_aligned CPTAC3 340f4483-55cc-4740-aa5e-7e6eff9d7d8c 916957a52a365149533b7a60dbffe5a1 {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_8ccacfb1.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012380009 1632a6bf-ad50-4049-ae37-69d390da80ad_wxs_gdc_realn.bam 32216952636 BAM harmonized CPTAC3 87b12750-cf04-4c16-a6e9-76cb26623a50 62cbf026b57a48a17b563def2618677f {"aliquot_tag": "DUP_8ccacfb1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_a3456c41.miRNA-Seq.S38_L003_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012360006 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L003_R1_001.unaln.bam 339476070 BAM S38_L003_R1 submitted_unaligned CPTAC3 7491cd65-34fb-434e-a4ac-b54621b96a81 cc6b51c7d8dda3275fb4e02696becec4 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_a3456c41.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012360006 76505d6b-d1d5-416e-8d71-9d49c1540aaf_mirnaseq_gdc_realn.bam 372884577 BAM harmonized CPTAC3 fce3a91f-fadb-4ef9-8ab9-2d05cc75ea5d cabc65c48c68aa54b3feaa3e7fffed3f {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_a3456c41.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.chimeric.gdc_realn.bam 79148040 BAM chimeric harmonized CPTAC3 6e0066d9-677e-4d27-a01d-38e384092801 fc620d6f6d73d1d103e03a63dce04561 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_a3456c41.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.genomic.gdc_realn.bam 8289038625 BAM genomic harmonized CPTAC3 28f73e5d-7b4c-4ca9-aab7-49f32897fed8 99a6865513c498c4cdb700cae417e6a1 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_a3456c41.RNA-Seq.S11_L003_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 3880063080 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 cb1d2aee-af7c-40af-8301-4db2b1421d49 4444d3ed8a7a18d5760be054d18b15df {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_a3456c41.RNA-Seq.S11_L003_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4474796601 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 6085220d-0b7d-4c0c-b6a5-11ca560676b8 9acec1826e88a79966d7ae40464fc357 {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_a3456c41.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.transcriptome.gdc_realn.bam 11278861374 BAM transcriptome harmonized CPTAC3 6194822b-e965-438c-94c2-8ad14df89e14 0fec3c2767b12a3f3f1a8a4a58b54c4a {"aliquot_tag": "DUP_a3456c41", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_b1aae601.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012390009 204372030164_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6180d0ff-1a06-4684-83df-4a1fd88d96cc c6966dc091bab96de3d362fbb48006b0 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_b1aae601.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012390009 204372030164_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 671aee2b-188e-4d75-92f7-e1bf7ecf9dbd 086f2857e3fd1b70f8ed65e2f81d2c59 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_b1aae601.WGS.T C3N-00320 CCRCC WGS tumor CPT0012390009 CPT0012390009.WholeGenome.RP-2158.bam 34486830400 BAM submitted_aligned CPTAC3 57f06e0e-8a1a-4998-a8c5-74ab1321c27a ee96c250fa9981c5591f0e0f1b4ebcd3 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_b1aae601.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012390009 2e70ceb6-bfef-4c8b-894d-29857c50f189_wgs_gdc_realn.bam 105712127072 BAM harmonized CPTAC3 706caa2b-607d-4ccf-91f2-0a365056924c b10a616623abc4519b4eab5bb5f16e08 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_b1aae601.WXS.T C3N-00320 CCRCC WXS tumor CPT0012390009 CPT0012390009.WholeExome.RP-1303.bam 17790709051 BAM submitted_aligned CPTAC3 1e65d664-5aae-437a-bb07-54ad717627a1 73596a1e45ba7152a155d2ad4ffa1d7a {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.DUP_b1aae601.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012390009 2e70ceb6-bfef-4c8b-894d-29857c50f189_wxs_gdc_realn.bam 24384065056 BAM harmonized CPTAC3 5e171167-5b6f-49e0-a851-f4cba240ecf9 9dddf411c4a45330a128e6b784038e93 {"aliquot_tag": "DUP_b1aae601", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.MethArray.Green.A C3N-00320 CCRCC Methylation_Array tissue_normal CPT0013790009 204930630109_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6f017cd0-b759-473b-9c5d-9986e67e4fc1 a4d38f35ffce2376ede262deacc7157a {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00320.MethArray.Green.T C3N-00320 CCRCC Methylation_Array tumor CPT0012370009 202176290116_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 036e8043-bc6d-4e69-b131-6a4cb73c3c66 c0b07640b3f77aec8e28b2c0b514521d {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.MethArray.Red.A C3N-00320 CCRCC Methylation_Array tissue_normal CPT0013790009 204930630109_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 d7776e75-7046-481f-b45d-142b8dec75c8 1e8ee20c85d12b18eeb82f2a3b9b81c4 {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00320.MethArray.Red.T C3N-00320 CCRCC Methylation_Array tumor CPT0012370009 202176290116_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 a349dddb-d6fa-4b74-942c-c6129dd68819 55975a848b7dac415018d885ed364140 {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.miRNA-Seq.S2_L003_R1.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012370006 181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L003_R1_001.unaln.bam 281152360 BAM S2_L003_R1 submitted_unaligned CPTAC3 c33e1bc4-a082-4ddc-89f2-6984f05783db 014f7673247b91a967922a4ea3ff2bde {"aliquot_tag": "ALQ_9e2545f1", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012370006 8738c4d1-d405-475f-9a02-630f7ec9a26d_mirnaseq_gdc_realn.bam 311668242 BAM harmonized CPTAC3 f26f80f0-d544-402c-b9e9-2f6a0b709b61 e1864c178114bb0fdb57d474eedc9115 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.chimeric.gdc_realn.bam 48290566 BAM chimeric harmonized CPTAC3 8ce6be0d-1192-4901-8072-64d69946c406 991c77ec9e545d6ed4835247a48baf79 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.genomic.gdc_realn.bam 6274112352 BAM genomic harmonized CPTAC3 87e63566-1572-4d42-850f-6755e00ab3ca d5f203484f6c8fdbce518b1d3b2a1877 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.RNA-Seq.S9_L008_R1.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R1_001.fastq.gz 3091322265 FASTQ S9_L008_R1 submitted_unaligned CPTAC3 37b120ef-3755-4e45-8be1-507d5c35c3e4 441e8f610fb2c14b1a3ebe8a6d464f09 {"aliquot_tag": "ALQ_9e2545f1", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.RNA-Seq.S9_L008_R2.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R2_001.fastq.gz 3392071071 FASTQ S9_L008_R2 submitted_unaligned CPTAC3 94898532-9a80-4e95-872f-0947b84f97ba 0f7ec41918a06aa947f05ea005cc8123 {"aliquot_tag": "ALQ_9e2545f1", "sample": "S9", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.transcriptome.gdc_realn.bam 8517514902 BAM transcriptome harmonized CPTAC3 d1574f55-fdbc-4207-9761-60c742767558 f7544a262ab331976365365782605910 {"aliquot_tag": "ALQ_9e2545f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.WGS.A C3N-00320 CCRCC WGS tissue_normal CPT0013790009 CPT0013790009.WholeGenome.RP-1303.bam 55439275683 BAM submitted_aligned CPTAC3 2f1589a0-c19e-4097-941f-57173cc7edb2 1af30ca89e8c05f0800c1c5aab29f558 {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00320.WGS.A.hg38 C3N-00320 CCRCC WGS tissue_normal CPT0013790009 4f532e9c-941f-4b49-8dbd-91d63703c946_wgs_gdc_realn.bam 80906710944 BAM harmonized CPTAC3 be927f6b-41da-4bdc-bc7a-2108446f4ce0 723257b5b5dde86adc5b05770ea2e71f {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00320.WGS.N C3N-00320 CCRCC WGS blood_normal CPT0012530002 CPT0012530002.WholeGenome.RP-1303.bam 59503838394 BAM submitted_aligned CPTAC3 09a1e9de-652f-4e1d-9ced-d4f7cdfbe5dd f59d07dbafdede50511cf102fb9cb1e0 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00320.WGS.N.hg38 C3N-00320 CCRCC WGS blood_normal CPT0012530002 c757ba45-b388-46bf-8eca-6984ac78b872_gdc_realn.bam 86274042139 BAM harmonized CPTAC3 c661b8e5-9335-4e64-9665-767f0cb11da4 31e395c479bb0113861dfc4100848163 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00320.WGS.T C3N-00320 CCRCC WGS tumor CPT0012370009 CPT0012370009.WholeGenome.RP-1303.bam 59682086301 BAM submitted_aligned CPTAC3 35247cfe-cc30-4a02-bcbc-36c421c233e7 8306505d2f6b5de3eaacbacc182b9d6c {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.WGS.T.hg38 C3N-00320 CCRCC WGS tumor CPT0012370009 c79489e1-b42b-4426-99c1-a6008778a63c_gdc_realn.bam 87665635274 BAM harmonized CPTAC3 c0fb75ac-116e-4bc9-b0fa-904c76ead6ac 7401855bbaf8892ab1cd65e11d12ccf7 {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.WXS.A C3N-00320 CCRCC WXS tissue_normal CPT0013790009 CPT0013790009.WholeExome.RP-1303.bam 48614439466 BAM submitted_aligned CPTAC3 2b0d15c9-415f-4c41-9710-c47a4143fe15 17c8a223525de8bc517cfd44bd7bbb7f {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00320.WXS.A.hg38 C3N-00320 CCRCC WXS tissue_normal CPT0013790009 4f532e9c-941f-4b49-8dbd-91d63703c946_wxs_gdc_realn.bam 65456776510 BAM harmonized CPTAC3 41c25043-9857-4a20-87d2-9e000061eb84 05c4edf888d77395ee89ab2d50995adc {"aliquot_tag": "ALQ_8c4cafa3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00320.WXS.N C3N-00320 CCRCC WXS blood_normal CPT0012530002 CPT0012530002.WholeExome.RP-1303.bam 24651820755 BAM submitted_aligned CPTAC3 891dc65a-cf3a-4197-9b25-cfa67b957038 57ee0259d35ba4c76d0ae1426adf8ab7 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00320.WXS.N.hg38 C3N-00320 CCRCC WXS blood_normal CPT0012530002 c757ba45-b388-46bf-8eca-6984ac78b872_gdc_realn.bam 33801293421 BAM harmonized CPTAC3 3b9a2ebc-2dc9-45f5-b4e1-b67572db5204 b8e823b83a741fd0383b61bc7e8ddad6 {"aliquot_tag": "ALQ_ba91c435", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00320.WXS.T C3N-00320 CCRCC WXS tumor CPT0012370009 CPT0012370009.WholeExome.RP-1303.bam 25362461894 BAM submitted_aligned CPTAC3 2967f875-3cfe-4ec8-8e34-60a4f854730d a5d8d03156890cf9ab018f028a7a3d67 {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00320.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012370009 c79489e1-b42b-4426-99c1-a6008778a63c_gdc_realn.bam 34389676597 BAM harmonized CPTAC3 cf7fd859-abdd-4959-938b-2651f551b46b 9b6184e7ae76b5229b93a9d79648691f {"aliquot_tag": "ALQ_e9a5860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.MethArray.Green.T C3N-00321 UCEC Methylation_Array tumor CPT0010260006 202163530118_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bab47cf6-33a4-4d61-9399-5e5eb96a36c8 8489e85604494e68fe136cd54cc342e7 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.MethArray.Red.T C3N-00321 UCEC Methylation_Array tumor CPT0010260006 202163530118_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 7fbdc5ed-8a78-47b1-9170-b7177908d0d4 c14e5f8f21d9be8b725d1c0567c03799 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.miRNA-Seq.S5_L003_R1.T C3N-00321 UCEC miRNA-Seq tumor CPT0010260013 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L003_R1_001.unaln.bam 213546998 BAM S5_L003_R1 submitted_unaligned CPTAC3 ae0651ba-7465-49e3-9b34-66b86bf9c7d9 6211ee2d8fa282d5e2edc144231e34ff {"aliquot_tag": "ALQ_96f76b03", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.miRNA-Seq.T.hg38 C3N-00321 UCEC miRNA-Seq tumor CPT0010260013 34f015e0-5eff-494f-a06f-d65b69c6d3f0_mirnaseq_gdc_realn.bam 235902997 BAM harmonized CPTAC3 364cc440-ea91-43fd-968f-92b2b2586850 56dc7d6dffcea13d0d799b8a246d0e3b {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.RNA-Seq.chimeric.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.chimeric.gdc_realn.bam 81084810 BAM chimeric harmonized CPTAC3 2c0ba0dc-39b3-432f-b1d2-9813c5859403 873abf511d8fb5d6b2fa32f26ad75c74 {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.RNA-Seq.genomic.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.genomic.gdc_realn.bam 7081895409 BAM genomic harmonized CPTAC3 bb525823-44bc-4565-9130-e00534d486ac 09273adfdc2682ba4fafa7287cbc1728 {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.RNA-Seq.S21_L007_R1.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R1_001.fastq.gz 3752068132 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 0de8cfbb-adb2-4d1d-91f6-685a03b16449 2e1f8547023d02e89e0d4a4ced588871 {"aliquot_tag": "ALQ_96f76b03", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.RNA-Seq.S21_L007_R2.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R2_001.fastq.gz 3994694692 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 cc11b6d3-897f-4158-96a4-91b5ebbbb74e 5281010273ad198c901258b823d2440b {"aliquot_tag": "ALQ_96f76b03", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.RNA-Seq.transcriptome.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.transcriptome.gdc_realn.bam 9431039066 BAM transcriptome harmonized CPTAC3 ebaa25b8-971e-4503-8149-f91ffd0a2f58 8153294d2c7221ad13d3409454d8ff7a {"aliquot_tag": "ALQ_96f76b03", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.WGS.N C3N-00321 UCEC WGS blood_normal CPT0010380002 CPT0010380002.WholeGenome.RP-1303.bam 69369614862 BAM submitted_aligned CPTAC3 cafbc744-d17d-40db-8263-791f2ae1cb1c b76b87b8720b22f82b9fac58b06f5207 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00321.WGS.N.hg38 C3N-00321 UCEC WGS blood_normal CPT0010380002 5af7cd9f-e8dd-49af-ac6a-6badeed9fd8d_gdc_realn.bam 101250756816 BAM harmonized CPTAC3 3a2749ed-da5e-477a-9cd4-900035dc627b 396cbd83617d92f81f787b36c3749eb2 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00321.WGS.T C3N-00321 UCEC WGS tumor CPT0010260006 CPT0010260006.WholeGenome.RP-1303.bam 64158462864 BAM submitted_aligned CPTAC3 a473b06c-e585-4086-9870-a4e7884f1d2e 4e4bbff8e71e45329153eb6e81861b58 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.WGS.T.hg38 C3N-00321 UCEC WGS tumor CPT0010260006 1835754d-479f-4784-9083-921104cb7a68_gdc_realn.bam 95008872223 BAM harmonized CPTAC3 da271d9f-79b1-40d3-8ccb-43eb62566689 1e033cc2d812575f613c6b4deefaed17 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.WXS.N C3N-00321 UCEC WXS blood_normal CPT0010380002 CPT0010380002.WholeExome.RP-1303.bam 25539946290 BAM submitted_aligned CPTAC3 4618c73c-21c1-45a5-8354-40b8d85a82e5 8263122a3da19ce0a9a04d91ea2b8932 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00321.WXS.N.hg38 C3N-00321 UCEC WXS blood_normal CPT0010380002 5af7cd9f-e8dd-49af-ac6a-6badeed9fd8d_gdc_realn.bam 34930489201 BAM harmonized CPTAC3 215e2fdf-ca19-4def-9faf-067115d046d4 b390512e577dbb5a79e3e8b051b812f8 {"aliquot_tag": "ALQ_8c870710", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00321.WXS.T C3N-00321 UCEC WXS tumor CPT0010260006 CPT0010260006.WholeExome.RP-1303.bam 26960772254 BAM submitted_aligned CPTAC3 5c324ae6-3212-436b-a15f-da22617a00ee aed397b96d4e0671ec27267ae6fd7a35 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00321.WXS.T.hg38 C3N-00321 UCEC WXS tumor CPT0010260006 1835754d-479f-4784-9083-921104cb7a68_gdc_realn.bam 36697192390 BAM harmonized CPTAC3 e1661ddf-c57f-4d99-b859-53baacfb1010 6f159f1a2b4b69a2d62767d1ea64b433 {"aliquot_tag": "ALQ_ff86aecd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.MethArray.Green.T C3N-00322 UCEC Methylation_Array tumor CPT0010430006 202184900149_R07C01_Grn.idat 13676256 IDAT Green NA CPTAC3 416acda6-b1d8-4f9a-8895-239202a1772a 21a93e0f47c268f8c476452ea0ee6f1d {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.MethArray.Red.T C3N-00322 UCEC Methylation_Array tumor CPT0010430006 202184900149_R07C01_Red.idat 13676256 IDAT Red NA CPTAC3 6382ceaa-72b8-4834-8263-94d57ec8213c 6d0e6bf0547afc7d44797c71ae026c37 {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.miRNA-Seq.S41_L002_R1.T C3N-00322 UCEC miRNA-Seq tumor CPT0010430009 181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L002_R1_001.unaln.bam 199951163 BAM S41_L002_R1 submitted_unaligned CPTAC3 247ce094-2ff3-4fd4-affe-e065a316496c 0dc29e9c8ba5ab7e58a8d63afa528641 {"aliquot_tag": "ALQ_7180df31", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.miRNA-Seq.T.hg38 C3N-00322 UCEC miRNA-Seq tumor CPT0010430009 74e8e745-6ea8-45ba-8a17-f5399b2d947d_mirnaseq_gdc_realn.bam 221374565 BAM harmonized CPTAC3 3ce10d87-ef9f-4402-8f23-0ab09905d18d bee6f337447858d5fa44f167fae3e8d9 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.RNA-Seq.chimeric.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.chimeric.gdc_realn.bam 142707640 BAM chimeric harmonized CPTAC3 4afb5b96-8f23-4c81-9343-c5b00a5d0846 2ef9aeb0cf55448a81682734453e3bd9 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.RNA-Seq.genomic.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.genomic.gdc_realn.bam 7374070456 BAM genomic harmonized CPTAC3 b048ddd7-1f6b-477d-8bac-fe8ad7ac9529 f0e0709d76588abf4d82e4f298261004 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.RNA-Seq.S5_L008_R1.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3553567243 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 86f3b033-6491-4d96-bf41-f51ddfc6bb5b a08b316f957ec9853af165b83dbd0e08 {"aliquot_tag": "ALQ_7180df31", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.RNA-Seq.S5_L008_R2.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3675749783 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 258cde18-4abd-4a5f-8140-23f1da45abdc 1f1520cd6cabb80f74632a01a2dd25ae {"aliquot_tag": "ALQ_7180df31", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.RNA-Seq.transcriptome.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.transcriptome.gdc_realn.bam 11777070503 BAM transcriptome harmonized CPTAC3 56d29159-71f1-4408-9318-29ea5417f7fe 4df0324547cbad18df0533eb1f0bfd48 {"aliquot_tag": "ALQ_7180df31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.WGS.N C3N-00322 UCEC WGS blood_normal CPT0077050001 CPT0077050001.WholeGenome.RP-1303.bam 64984269673 BAM submitted_aligned CPTAC3 3a8668fe-116d-4cf6-acc2-e7fc6231ac2c 1f7346e399431993bcbba3ab00286bdf {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00322.WGS.N.hg38 C3N-00322 UCEC WGS blood_normal CPT0077050001 57e730bf-2e32-4cf2-907b-f191778b6783_gdc_realn.bam 98300820182 BAM harmonized CPTAC3 c44027d8-b828-4d83-b821-f9c8b1dcd844 a36ee4ec1946045463ab1029d5830d87 {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00322.WGS.T C3N-00322 UCEC WGS tumor CPT0010430006 CPT0010430006.WholeGenome.RP-1303.bam 77617112749 BAM submitted_aligned CPTAC3 68084f36-cf82-4e3e-9124-b687a74ef7d1 0425e55200b13add78159c0b624e8d91 {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.WGS.T.hg38 C3N-00322 UCEC WGS tumor CPT0010430006 dfc8a271-3680-4e17-a894-06841e360ef2_gdc_realn.bam 115264101165 BAM harmonized CPTAC3 f3d0e5ea-1ad6-444e-884f-d198aab1f134 373538d34608b4ffd0825ac02db8c87d {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.WXS.N C3N-00322 UCEC WXS blood_normal CPT0077050001 CPT0077050001.WholeExome.RP-1303.bam 25062338241 BAM submitted_aligned CPTAC3 af241383-48c7-4492-8b90-c16b3fe72e2d 6ba0d32a84cb38bb9efd994abb3e0493 {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00322.WXS.N.hg38 C3N-00322 UCEC WXS blood_normal CPT0077050001 57e730bf-2e32-4cf2-907b-f191778b6783_gdc_realn.bam 33659078455 BAM harmonized CPTAC3 4989f40e-696b-41f9-bf68-f0b89e76f9b8 253535305aebc8c11aeb92c59ff7f789 {"aliquot_tag": "ALQ_6842d7bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00322.WXS.T C3N-00322 UCEC WXS tumor CPT0010430006 CPT0010430006.WholeExome.RP-1303.bam 26555742935 BAM submitted_aligned CPTAC3 799392c1-a0d2-420b-8743-7923c6b3e65d 35b2f5c2f14bf855cc0dff1e842e9d2e {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00322.WXS.T.hg38 C3N-00322 UCEC WXS tumor CPT0010430006 dfc8a271-3680-4e17-a894-06841e360ef2_gdc_realn.bam 36369247194 BAM harmonized CPTAC3 a60a9f62-9124-4a9d-8c28-1df22de7e053 8113a911632e375aeec21269b8df4c66 {"aliquot_tag": "ALQ_e13fc2a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.MethArray.Green.T C3N-00323 UCEC Methylation_Array tumor CPT0010610006 202176290147_R04C01_Grn.idat 13676215 IDAT Green NA CPTAC3 8efe791a-69a5-4ea2-a3fb-15c9eae19910 f8f00b5828a9b159cd00de5c98d8206b {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.MethArray.Red.T C3N-00323 UCEC Methylation_Array tumor CPT0010610006 202176290147_R04C01_Red.idat 13676215 IDAT Red NA CPTAC3 e1665079-a024-4567-958a-4a24c7bc000a e2d160d6a425ff9026c0c978c751f467 {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.miRNA-Seq.S42_L002_R1.T C3N-00323 UCEC miRNA-Seq tumor CPT0010610009 181012_UNC32-K00270_0124_AH223CBBXY_CGTACG_S42_L002_R1_001.unaln.bam 219630348 BAM S42_L002_R1 submitted_unaligned CPTAC3 69533d29-4d53-4530-9b45-7c13047d2dcf b5aea0aedc80d1c2f3b6d39bc073fcf5 {"aliquot_tag": "ALQ_46882d5a", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.miRNA-Seq.T.hg38 C3N-00323 UCEC miRNA-Seq tumor CPT0010610009 efa0be95-7c16-4a53-9da7-03ec3c0f5aab_mirnaseq_gdc_realn.bam 241137160 BAM harmonized CPTAC3 a3cb5e24-d661-4455-a4dc-c5d1209b2c24 fa908c0c658a02b31425dad8e4c6b3df {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.RNA-Seq.chimeric.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.chimeric.gdc_realn.bam 257455491 BAM chimeric harmonized CPTAC3 e0b40769-3617-40d0-958f-db8fcd2f3959 91c1905b2dcea37a38c47e031422b81a {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.RNA-Seq.genomic.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.genomic.gdc_realn.bam 9383791902 BAM genomic harmonized CPTAC3 4b04fc45-9a46-4c1a-b9c2-b2444bce8c1a dd7c4a8296f9ae5c7c034540cfaf87b2 {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.RNA-Seq.S6_L008_R1.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4395483954 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 6c14578c-92ff-4085-a8d8-d5122ff4fd11 6d0b2ee628cef309c705371ee9041e38 {"aliquot_tag": "ALQ_46882d5a", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.RNA-Seq.S6_L008_R2.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4750813976 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 727a9891-1116-4c77-9787-a08111f0b3e8 2dbab226164b1ad4aaaa77fc12bc6429 {"aliquot_tag": "ALQ_46882d5a", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.RNA-Seq.transcriptome.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.transcriptome.gdc_realn.bam 8924037157 BAM transcriptome harmonized CPTAC3 41dc37e8-4c83-4e30-9331-86fb37e64bf4 7019615309ffd912f0282552e8e88f89 {"aliquot_tag": "ALQ_46882d5a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.WGS.N C3N-00323 UCEC WGS blood_normal CPT0010760002 CPT0010760002.WholeGenome.RP-1303.bam 66268160978 BAM submitted_aligned CPTAC3 cd876b39-d4dd-4757-81c2-b8156a27d5e7 c91b44882fd7e686c0762a1791c96a2a {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00323.WGS.N.hg38 C3N-00323 UCEC WGS blood_normal CPT0010760002 577c96fe-53aa-4c2d-9410-263e818b88d0_gdc_realn.bam 94883553811 BAM harmonized CPTAC3 f14df642-0372-4fce-98ae-e94369a425cd 601128f38961d30abbcd604fd9d684ca {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00323.WGS.T C3N-00323 UCEC WGS tumor CPT0010610006 CPT0010610006.WholeGenome.RP-1303.bam 62764860319 BAM submitted_aligned CPTAC3 04badc97-81c6-473e-ba05-4fe3408f32a0 7dc605a70815b59f4291d18e0833474a {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.WGS.T.hg38 C3N-00323 UCEC WGS tumor CPT0010610006 5b342ae2-f869-4fb5-af0d-556559e43e54_gdc_realn.bam 91892826262 BAM harmonized CPTAC3 81a11798-0812-4fda-81fb-43b01a15f562 f2ac375949e870290f59318f760576d7 {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.WXS.N C3N-00323 UCEC WXS blood_normal CPT0010760002 CPT0010760002.WholeExome.RP-1303.bam 28155463544 BAM submitted_aligned CPTAC3 3db8c0a1-bd86-4421-b9f7-c03931cf68fd 2ed155ac613cb209acbe163374025e42 {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00323.WXS.N.hg38 C3N-00323 UCEC WXS blood_normal CPT0010760002 577c96fe-53aa-4c2d-9410-263e818b88d0_gdc_realn.bam 39014786730 BAM harmonized CPTAC3 37e704ce-f3af-4ef0-ad64-d94fad73aa39 736762283fb629c03e4a612a44aec4b5 {"aliquot_tag": "ALQ_a826fb67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00323.WXS.T C3N-00323 UCEC WXS tumor CPT0010610006 CPT0010610006.WholeExome.RP-1303.bam 24484798521 BAM submitted_aligned CPTAC3 02c2e0f0-0f10-4f0c-91cf-15763338f0cf 136fcbd674d886d4b97d294407ffd017 {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00323.WXS.T.hg38 C3N-00323 UCEC WXS tumor CPT0010610006 5b342ae2-f869-4fb5-af0d-556559e43e54_gdc_realn.bam 33453221954 BAM harmonized CPTAC3 ac736b73-851b-457f-a05b-ccd1cda0cf77 fed2895a3c1e63357134158c84c5d77e {"aliquot_tag": "ALQ_d63730cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.MethArray.Green.T C3N-00324 UCEC Methylation_Array tumor CPT0010820006 202178770006_R01C01_Grn.idat 13676249 IDAT Green NA CPTAC3 138f72a8-57b9-48ab-9842-7f2d243cbc19 da61621fe53068fc7506079227a1e43d {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.MethArray.Red.T C3N-00324 UCEC Methylation_Array tumor CPT0010820006 202178770006_R01C01_Red.idat 13676249 IDAT Red NA CPTAC3 4fb6c65b-9fdf-4f48-a103-692394ba50b8 34ebc75b856ced9c6d51b7a55d5e2f01 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.miRNA-Seq.S43_L003_R1.T C3N-00324 UCEC miRNA-Seq tumor CPT0010820009 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L003_R1_001.unaln.bam 202782331 BAM S43_L003_R1 submitted_unaligned CPTAC3 9f755b11-1790-40b8-80be-4a74edf2e3a2 f8399cfe084dbdc5b25854c98467839c {"aliquot_tag": "ALQ_3b2236fa", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.miRNA-Seq.T.hg38 C3N-00324 UCEC miRNA-Seq tumor CPT0010820009 06ea7580-e066-43f2-8844-f67bea171e0a_mirnaseq_gdc_realn.bam 221672750 BAM harmonized CPTAC3 21b9cc35-b35b-41f8-b13f-1c1658e0311b 1a10ecf126e0011d67f7e9b4ad3855cc {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.RNA-Seq.chimeric.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.chimeric.gdc_realn.bam 174969564 BAM chimeric harmonized CPTAC3 4de3f70e-b147-4b59-afff-db4155178f94 dffd58d40be277d868c2146a6d576c55 {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.RNA-Seq.genomic.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.genomic.gdc_realn.bam 7385026644 BAM genomic harmonized CPTAC3 1533a36c-0bda-4495-a816-bc005706fed7 121b590cac4fff27c76948da0b1bf15c {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.RNA-Seq.S21_L008_R1.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R1_001.fastq.gz 3609157312 FASTQ S21_L008_R1 submitted_unaligned CPTAC3 a76e636b-9fd0-4cf2-b0c6-78ed366d7c3d a138b6d49e9e4c9e5afdb95a36cf65c3 {"aliquot_tag": "ALQ_3b2236fa", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.RNA-Seq.S21_L008_R2.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R2_001.fastq.gz 3924023983 FASTQ S21_L008_R2 submitted_unaligned CPTAC3 ced11262-32d0-42c6-a91f-2d3f801ed551 5fe9d62a6bd4824c880d7cde8aef546f {"aliquot_tag": "ALQ_3b2236fa", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.RNA-Seq.transcriptome.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.transcriptome.gdc_realn.bam 9199533680 BAM transcriptome harmonized CPTAC3 a58ca1e1-41c5-4e11-8ff9-210cd8fed79e 024cd34eb3ece4da58e9d8a85c3bcc2b {"aliquot_tag": "ALQ_3b2236fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.WGS.N C3N-00324 UCEC WGS blood_normal CPT0010950002 CPT0010950002.WholeGenome.RP-1303.bam 62350240534 BAM submitted_aligned CPTAC3 75382ed6-be8d-438d-b0c6-390078fafbe9 8100f2fd3d01d4cb31398bcbb486b98c {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00324.WGS.N.hg38 C3N-00324 UCEC WGS blood_normal CPT0010950002 cd24c578-62a3-4d17-bf84-b1c439977cce_gdc_realn.bam 88905044030 BAM harmonized CPTAC3 913cfbfa-c656-4161-b42d-7d343b7cffeb 41f8a0e926d0b3739723da42d1bc8976 {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00324.WGS.T C3N-00324 UCEC WGS tumor CPT0010820006 CPT0010820006.WholeGenome.RP-1303.bam 71103573653 BAM submitted_aligned CPTAC3 fe34fdee-3693-4f19-9082-b205d636d838 d39dab888823bec32f13d02e6d507661 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.WGS.T.hg38 C3N-00324 UCEC WGS tumor CPT0010820006 5142f7db-1b0f-466b-bcb3-9704940ffdab_gdc_realn.bam 102894798577 BAM harmonized CPTAC3 417609db-9760-41da-af19-8258e8ab57ea 4f55f43202fbf317f6122d47539d6da6 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.WXS.N C3N-00324 UCEC WXS blood_normal CPT0010950002 CPT0010950002.WholeExome.RP-1303.bam 30759604325 BAM submitted_aligned CPTAC3 076629d4-e94a-4038-b307-a739802370c1 e9d35bc16b5de9c3192c65b1c78a87c1 {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00324.WXS.N.hg38 C3N-00324 UCEC WXS blood_normal CPT0010950002 cd24c578-62a3-4d17-bf84-b1c439977cce_gdc_realn.bam 42797294317 BAM harmonized CPTAC3 1ce30c13-0c75-412b-86ee-5a951e7efb92 e1d0d41885ba0c58a53412a4b5322732 {"aliquot_tag": "ALQ_d58ce0c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00324.WXS.T C3N-00324 UCEC WXS tumor CPT0010820006 CPT0010820006.WholeExome.RP-1303.bam 28692289014 BAM submitted_aligned CPTAC3 8e136610-d0b3-4cb7-9255-864fc245c501 63f6bc39cc55557ce52f0e9131304384 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00324.WXS.T.hg38 C3N-00324 UCEC WXS tumor CPT0010820006 5142f7db-1b0f-466b-bcb3-9704940ffdab_gdc_realn.bam 39707775955 BAM harmonized CPTAC3 0aeb075f-7fad-4391-8773-a716e053eb2b 2b2dd28813c1aeacb124a2bb8320a671 {"aliquot_tag": "ALQ_ab9d2b6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.MethArray.Green.T C3N-00326 UCEC Methylation_Array tumor CPT0022530006 202163550007_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1332c544-c65a-485c-84e2-03b449f575c3 2781cfd3afe5e30f3ee83d855ae48475 {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.MethArray.Red.T C3N-00326 UCEC Methylation_Array tumor CPT0022530006 202163550007_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 8b9676df-6b50-4c2f-9e34-e7428cf2f55c f08734ab2d71147269b203b420908f7b {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.miRNA-Seq.S151_L008_R1.T C3N-00326 UCEC miRNA-Seq tumor CPT0022530009 190828_UNC32-K00270_0200_BH7GVJBBXY_CACCGG_S151_L008_R1_001.unaln.bam 302263559 BAM S151_L008_R1 submitted_unaligned CPTAC3 2ec1d3a6-6eb9-4549-923b-c9c0ed518743 25b29324668867b3ff2269633b8f07ca {"aliquot_tag": "ALQ_a3cc1a5e", "sample": "S151", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.miRNA-Seq.T.hg38 C3N-00326 UCEC miRNA-Seq tumor CPT0022530009 3f2bbbfd-2825-4b8e-9efe-e7c02019e804_mirnaseq_gdc_realn.bam 325626164 BAM harmonized CPTAC3 1c86a935-7106-48a4-8ccb-a9e5eaa48daa 97bdc974ba096163addabae1b07fc8a3 {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.RNA-Seq.chimeric.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.chimeric.gdc_realn.bam 68784250 BAM chimeric harmonized CPTAC3 5225e16e-36ea-4995-8678-5a85b7c180cc fac70cf029327da16882c16405581a9e {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.RNA-Seq.genomic.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.genomic.gdc_realn.bam 7620579349 BAM genomic harmonized CPTAC3 7fbd5556-5c4b-48e8-9a7e-8bcffe81e78f 191096aad5d554fc1c72ea2a62aff391 {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.RNA-Seq.S8_L008_R1.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R1_001.fastq.gz 3688649938 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 fd7cf324-b89a-4558-a03f-d64ef2be88ff c67a8034f0b19fb5d78cba87fbd4fd3c {"aliquot_tag": "ALQ_a3cc1a5e", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.RNA-Seq.S8_L008_R2.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R2_001.fastq.gz 4012581715 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 90917b44-0072-4cec-bd84-9dd8885045f0 7ddd040fc6c2999b9f4697eb7d16d129 {"aliquot_tag": "ALQ_a3cc1a5e", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.RNA-Seq.transcriptome.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.transcriptome.gdc_realn.bam 9125657703 BAM transcriptome harmonized CPTAC3 bf956393-44b9-4274-aa3f-16f9b6dad62a 8a67c53225954711a5863feb49d8505a {"aliquot_tag": "ALQ_a3cc1a5e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.WGS.N C3N-00326 UCEC WGS blood_normal CPT0019690002 CPT0019690002.WholeGenome.RP-1303.bam 57655926001 BAM submitted_aligned CPTAC3 3d88a08d-2067-4b56-9053-6b500b54ce6b 13742c2a194e93a11dbbb80a8dceb679 {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00326.WGS.N.hg38 C3N-00326 UCEC WGS blood_normal CPT0019690002 fe5e1dd1-ea01-4ff5-8019-c8d372a33339_gdc_realn.bam 82547038228 BAM harmonized CPTAC3 1d0fce2e-e790-4ff1-880b-67ecb7234d4b 2e54ae7c4b991c83a6f82764f8371751 {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00326.WGS.T C3N-00326 UCEC WGS tumor CPT0022530006 CPT0022530006.WholeGenome.RP-1303.bam 63034907834 BAM submitted_aligned CPTAC3 06ee7b56-c8a6-4479-b2cb-b4096679ebca 1b9e6904d05ddc6bb818605562a81d03 {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.WGS.T.hg38 C3N-00326 UCEC WGS tumor CPT0022530006 3fa66b09-0381-4234-9176-e70c8b4f7338_gdc_realn.bam 90645736751 BAM harmonized CPTAC3 0dc37b55-fee6-4705-beab-1d4dfa5b3fd4 5e013f8b1376802d22804a49f9930cdf {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.WXS.N C3N-00326 UCEC WXS blood_normal CPT0019690002 CPT0019690002.WholeExome.RP-1303.bam 27383726594 BAM submitted_aligned CPTAC3 ce1d5839-15dd-43bd-9ccd-faf8924ccc92 9ec1af99e7583a3fd24a926984323327 {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00326.WXS.N.hg38 C3N-00326 UCEC WXS blood_normal CPT0019690002 fe5e1dd1-ea01-4ff5-8019-c8d372a33339_gdc_realn.bam 37457429989 BAM harmonized CPTAC3 4971ed33-2da8-4d91-97c1-31564e3e1796 98e27c7109f2f88b09259680d700e66f {"aliquot_tag": "ALQ_74b2fac0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00326.WXS.T C3N-00326 UCEC WXS tumor CPT0022530006 CPT0022530006.WholeExome.RP-1303.bam 27340614152 BAM submitted_aligned CPTAC3 b2a6131b-ac34-46fc-a70e-709411f20121 d4c3e432b8d8463352281f83bb3959ca {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00326.WXS.T.hg38 C3N-00326 UCEC WXS tumor CPT0022530006 3fa66b09-0381-4234-9176-e70c8b4f7338_gdc_realn.bam 37239631643 BAM harmonized CPTAC3 dad5a4fb-980f-4fac-a55f-19f43b41478b b18d35ecc615273a6508fd6e7ca836db {"aliquot_tag": "ALQ_337307cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.MethArray.Green.T C3N-00328 UCEC Methylation_Array tumor CPT0019840009 202184900104_R03C01_Grn.idat 13676256 IDAT Green NA CPTAC3 f05d1b8b-2fbe-4a14-9144-8e300d2b7198 17d0548867868dae50652437eabfb6b4 {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.MethArray.Red.T C3N-00328 UCEC Methylation_Array tumor CPT0019840009 202184900104_R03C01_Red.idat 13676256 IDAT Red NA CPTAC3 5557387d-4f17-4697-bb1d-66e70d6323b2 b810637f768428039ef0930badcb52ac {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.miRNA-Seq.S31_L004_R1.T C3N-00328 UCEC miRNA-Seq tumor CPT0019840006 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L004_R1_001.unaln.bam 186912880 BAM S31_L004_R1 submitted_unaligned CPTAC3 9b200823-7988-49f3-8378-5b8abec7796f 5339c2f9ba88fb38d7e7c537634975c5 {"aliquot_tag": "ALQ_b1459b18", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.miRNA-Seq.T.hg38 C3N-00328 UCEC miRNA-Seq tumor CPT0019840006 4fc50a93-10d2-412b-a54b-7d79c27d3f86_mirnaseq_gdc_realn.bam 202287482 BAM harmonized CPTAC3 abf1208e-b3a8-4147-b011-effeaa63b88c 74b865655cd81d54e90a5af4803427e4 {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.RNA-Seq.chimeric.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.chimeric.gdc_realn.bam 121145120 BAM chimeric harmonized CPTAC3 62ebcc3e-d655-46bb-9ecc-babc3f8b2f57 0abf07369c22e6bcc21d38cbe2138313 {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.RNA-Seq.genomic.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.genomic.gdc_realn.bam 7896192029 BAM genomic harmonized CPTAC3 ebc26da6-b81f-45c0-9f79-d15a6ece9484 33770bb0fa2cf7d946c4afb3cb9743a0 {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.RNA-Seq.S16_L004_R1.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R1_001.fastq.gz 3959039547 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 1409ef12-3919-4b88-b5b8-4a85576fadc7 d375125429815d99bd1a17a72aef7342 {"aliquot_tag": "ALQ_b1459b18", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.RNA-Seq.S16_L004_R2.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R2_001.fastq.gz 4315617697 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 fba3daa2-3a66-4af6-aa02-ff5cb8d534eb acfc8732d00ec3a77175dcf29d0943fd {"aliquot_tag": "ALQ_b1459b18", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.RNA-Seq.transcriptome.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.transcriptome.gdc_realn.bam 9917902583 BAM transcriptome harmonized CPTAC3 67e80ee4-cb24-4439-9f3c-aa14470556f5 02520de4c4cbebac6e3f2ce82d91d4cd {"aliquot_tag": "ALQ_b1459b18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.WGS.N C3N-00328 UCEC WGS blood_normal CPT0020410002 CPT0020410002.WholeGenome.RP-1303.bam 69792154820 BAM submitted_aligned CPTAC3 2ba4680d-fc29-473d-9be9-a07d458f26c9 0e756d6cd37ba28c47d5de5231e5a82e {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00328.WGS.N.hg38 C3N-00328 UCEC WGS blood_normal CPT0020410002 290e3a66-502c-40c7-b6cc-e4783b31bf23_gdc_realn.bam 102291829553 BAM harmonized CPTAC3 bdfcac24-2bb8-471f-ab8b-6fe9f1f10c3b 1eff9678bf2f9d6331aac92384e68b0f {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00328.WGS.T C3N-00328 UCEC WGS tumor CPT0019840009 CPT0019840009.WholeGenome.RP-1303.bam 69953212575 BAM submitted_aligned CPTAC3 ae967c0a-82aa-4f4c-ae6c-d990519e95fa 8d28befe329f0d602fde3d638b5ac542 {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.WGS.T.hg38 C3N-00328 UCEC WGS tumor CPT0019840009 4aec9b8e-d049-435a-8d3f-e17ee190dd8a_gdc_realn.bam 101067020272 BAM harmonized CPTAC3 6ba9f990-4d24-43fb-bf5b-1858a0146e7e 4ce4bf12faaafaffda45f419e8b5b0de {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.WXS.N C3N-00328 UCEC WXS blood_normal CPT0020410002 CPT0020410002.WholeExome.RP-1303.bam 30634502378 BAM submitted_aligned CPTAC3 ff4dbd26-ddd1-43ca-96b9-7b4b849268b6 81c166446d72df1a38113b2f86e5954f {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00328.WXS.N.hg38 C3N-00328 UCEC WXS blood_normal CPT0020410002 290e3a66-502c-40c7-b6cc-e4783b31bf23_gdc_realn.bam 42755736362 BAM harmonized CPTAC3 92a6ecef-93d2-4e81-ba10-8c6fa21e412e 51bd93ee130c65e2930d826f7410ae25 {"aliquot_tag": "ALQ_121d523a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00328.WXS.T C3N-00328 UCEC WXS tumor CPT0019840009 CPT0019840009.WholeExome.RP-1303.bam 28123357820 BAM submitted_aligned CPTAC3 57ca5aaa-f52d-46f0-adb6-9cae7b4afeab 581f5559673c24e316299626b375fd81 {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00328.WXS.T.hg38 C3N-00328 UCEC WXS tumor CPT0019840009 4aec9b8e-d049-435a-8d3f-e17ee190dd8a_gdc_realn.bam 38527121565 BAM harmonized CPTAC3 c1d2d417-5a50-4534-8ae1-fc69aca45772 4967c2fdf0f28cf0e507bebcf0b4f6ce {"aliquot_tag": "ALQ_21fa8689", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.ANN_5748e66e.WGS.N C3N-00333 UCEC WGS blood_normal CPT0011100002 CPT0011100002.WholeGenome.RP-1303.bam 62707497278 BAM submitted_aligned CPTAC3 96d7fbca-f386-4e59-bd26-a6476f2ff9ee f16893e7632210e855f2c1f58c51ca13 {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00333.ANN_5748e66e.WGS.N.hg38 C3N-00333 UCEC WGS blood_normal CPT0011100002 d6e45feb-9d72-474c-9d5b-a0b8d6c4dc8c_gdc_realn.bam 91414830757 BAM harmonized CPTAC3 1fdfd239-41aa-4c8d-8b8b-c84d4b525d67 e1ff420187183e10157ff4a61f87dcfd {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00333.ANN_5748e66e.WXS.N C3N-00333 UCEC WXS blood_normal CPT0011100002 CPT0011100002.WholeExome.RP-1303.bam 28432273162 BAM submitted_aligned CPTAC3 59cf4caf-2c41-4390-93cf-51f4dbeef3af 3b82dadf77131871e0f8e59e71c1b84e {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00333.ANN_5748e66e.WXS.N.hg38 C3N-00333 UCEC WXS blood_normal CPT0011100002 d6e45feb-9d72-474c-9d5b-a0b8d6c4dc8c_gdc_realn.bam 38875383146 BAM harmonized CPTAC3 cf748e44-e144-4034-ad2e-99d431d3be22 ca3af28280bb7e862bfc98a65b5fda4e {"aliquot_tag": "ANN_5748e66e", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00333.ANN_9b79f1d2.MethArray.Green.T C3N-00333 UCEC Methylation_Array tumor CPT0011000006 202178770143_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 763958ac-1799-4e0d-afb3-309f81cdc6bb 8a020927457e1847bd2bb1a6263ed117 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.ANN_9b79f1d2.MethArray.Red.T C3N-00333 UCEC Methylation_Array tumor CPT0011000006 202178770143_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 ace92bf5-0386-4e08-8aac-6dd8ba791427 41d26d995f985c13aec2dadc93552494 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.ANN_9b79f1d2.WGS.T C3N-00333 UCEC WGS tumor CPT0011000006 CPT0011000006.WholeGenome.RP-1303.bam 64713010105 BAM submitted_aligned CPTAC3 ec57c574-59cf-40a3-9793-cdaf519abc29 fa3ab00d1a793878f1faed480609fdd2 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.ANN_9b79f1d2.WGS.T.hg38 C3N-00333 UCEC WGS tumor CPT0011000006 deec3429-33f4-4946-a550-66acc74ee372_gdc_realn.bam 95053986433 BAM harmonized CPTAC3 3c2dee34-a0e2-4ee0-9ed1-3bb9405c0070 0f676a29275b2127edd72d692bdae400 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.ANN_9b79f1d2.WXS.T C3N-00333 UCEC WXS tumor CPT0011000006 CPT0011000006.WholeExome.RP-1303.bam 24938539301 BAM submitted_aligned CPTAC3 9deb7257-8b5f-4f3a-81f5-13f84026f6f9 a84910ad538040c434b5dbb3378ac508 {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.ANN_9b79f1d2.WXS.T.hg38 C3N-00333 UCEC WXS tumor CPT0011000006 deec3429-33f4-4946-a550-66acc74ee372_gdc_realn.bam 33961919756 BAM harmonized CPTAC3 a8e8fff3-176e-4b6d-a138-ce8079f4951c bccb95206c87de97f6a29c3ad72c596c {"aliquot_tag": "ANN_9b79f1d2", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.miRNA-Seq.A.hg38 C3N-00333 UCEC miRNA-Seq tissue_normal CPT0011020005 66702502-f018-407d-9599-e6a56426bd9e_mirnaseq_gdc_realn.bam 295518634 BAM harmonized CPTAC3 4d893e44-fdd9-4693-ad26-a735da8821d7 a13d22c3d855295975517e38f782fd82 {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00333.miRNA-Seq.S16_L007_R1.A C3N-00333 UCEC miRNA-Seq tissue_normal CPT0011020005 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L007_R1_001.unaln.bam 257167650 BAM S16_L007_R1 submitted_unaligned CPTAC3 6ebf4622-e23e-4d45-bca3-c49a599bb3c5 ac128e23e832ad0fc637dab3ead7be99 {"aliquot_tag": "ALQ_78b0f308", "sample": "S16", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00333.miRNA-Seq.S44_L003_R1.T C3N-00333 UCEC miRNA-Seq tumor CPT0011000009 181012_UNC32-K00270_0124_AH223CBBXY_GGTAGC_S44_L003_R1_001.unaln.bam 247649696 BAM S44_L003_R1 submitted_unaligned CPTAC3 f5830d0b-f49c-4b79-ad31-dbc65f760ccc 596f65272dad9c9be754b0330f72e737 {"aliquot_tag": "ALQ_bc6ec43", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.miRNA-Seq.T.hg38 C3N-00333 UCEC miRNA-Seq tumor CPT0011000009 0a9fc2fe-4b9d-485a-b7a9-f65ac2ef28e7_mirnaseq_gdc_realn.bam 269966713 BAM harmonized CPTAC3 802bf122-3cfd-4cea-b1ec-4fff5ae7beb5 ff6899e193f47c9af2aa7c8613d6fa3f {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.RNA-Seq.chimeric.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.chimeric.gdc_realn.bam 83062772 BAM chimeric harmonized CPTAC3 d1e569f4-700f-4803-9f0e-81a455e6f9f9 af0ac7d453e7662384815dabc6579edc {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00333.RNA-Seq.chimeric.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.chimeric.gdc_realn.bam 127161390 BAM chimeric harmonized CPTAC3 02fef471-5056-46e8-801e-3c24b87a3892 79125bdf048391a57bc3de5a7760b9a9 {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.RNA-Seq.genomic.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.genomic.gdc_realn.bam 8387959719 BAM genomic harmonized CPTAC3 c8639d9e-b917-4b09-b704-35d04299be8f 67b5f48111c348e73fbbe25cd0c06efe {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00333.RNA-Seq.genomic.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.genomic.gdc_realn.bam 8667903647 BAM genomic harmonized CPTAC3 28e9d054-9b01-4abb-b168-af0ce293ca95 eaa21332d01f053eaf6431998aa8583d {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.RNA-Seq.S22_L008_R1.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R1_001.fastq.gz 4073011700 FASTQ S22_L008_R1 submitted_unaligned CPTAC3 46b971bf-81ed-4c18-9272-3e65823123e2 b05ac9d74a565499f1b9676c25ad05c9 {"aliquot_tag": "ALQ_bc6ec43", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.RNA-Seq.S22_L008_R2.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R2_001.fastq.gz 4348896874 FASTQ S22_L008_R2 submitted_unaligned CPTAC3 ae764c5a-f0ca-4a2e-b08e-ef1a65ddfe20 5fab770863eb22a663e333467336a837 {"aliquot_tag": "ALQ_bc6ec43", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00333.RNA-Seq.S5_L002_R1.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R1_001.fastq.gz 4161818501 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 3b0cb9d5-e735-43db-81bc-dd41c5404e88 07a162c0bf490402451010c729106924 {"aliquot_tag": "ALQ_78b0f308", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00333.RNA-Seq.S5_L002_R2.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R2_001.fastq.gz 4173499576 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 2e65e11f-f0c6-43e1-a97f-42beb6bcf2e9 ba37e360dc7829bcf7279f86ae11fd6e {"aliquot_tag": "ALQ_78b0f308", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00333.RNA-Seq.transcriptome.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.transcriptome.gdc_realn.bam 9762539265 BAM transcriptome harmonized CPTAC3 caa533d8-0ae6-4415-9fe7-17c0f3f4b67a ee530dd29dde2a5db479bcc85f373dcb {"aliquot_tag": "ALQ_78b0f308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00333.RNA-Seq.transcriptome.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.transcriptome.gdc_realn.bam 10865660521 BAM transcriptome harmonized CPTAC3 0e052b35-eb2c-412c-80a8-34df49d292ce ea409ba57c360bab29b0fcf7783238e7 {"aliquot_tag": "ALQ_bc6ec43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.MethArray.Green.T C3N-00334 UCEC Methylation_Array tumor CPT0018570006 202163550076_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a40eb019-0924-48ba-bd2f-7c418248895e c3db7a73d84281e44b3aabcfc4c6f841 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.MethArray.Red.T C3N-00334 UCEC Methylation_Array tumor CPT0018570006 202163550076_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 874636d0-e6ca-46f3-bff9-4a3d06884913 57502bd78527e028665be63aea2d2f82 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.miRNA-Seq.S3_L003_R1.T C3N-00334 UCEC miRNA-Seq tumor CPT0018570009 181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L003_R1_001.unaln.bam 176382643 BAM S3_L003_R1 submitted_unaligned CPTAC3 7121a1a5-158e-4b8a-a9ae-b15452f69f8a a7348513c6798ba8d79d48c076721199 {"aliquot_tag": "ALQ_7cb3e433", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.miRNA-Seq.T.hg38 C3N-00334 UCEC miRNA-Seq tumor CPT0018570009 201ca10a-5b76-4b10-b971-60cbe7700eb6_mirnaseq_gdc_realn.bam 193479454 BAM harmonized CPTAC3 88a17809-5e4e-480f-925d-1dce5022ad80 9ab19d3f339a3ac9d18bd1e7f7ef507e {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.RNA-Seq.chimeric.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.chimeric.gdc_realn.bam 130838339 BAM chimeric harmonized CPTAC3 db5723ad-7294-4fa7-9722-57b57a683db5 c3e72bb153f5de5115387a5f156a0940 {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.RNA-Seq.genomic.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.genomic.gdc_realn.bam 7043123397 BAM genomic harmonized CPTAC3 235a3bea-425a-487d-9175-fc5c861ee99c ade394bf4cfcdf117ca75f55f7bfa664 {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.RNA-Seq.S14_L006_R1.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R1_001.fastq.gz 3581021854 FASTQ S14_L006_R1 submitted_unaligned CPTAC3 d92fcd95-f416-4785-aca7-f8c53a3099b1 1a7bc2169cff66424185a28b3efba90a {"aliquot_tag": "ALQ_7cb3e433", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.RNA-Seq.S14_L006_R2.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R2_001.fastq.gz 4015136626 FASTQ S14_L006_R2 submitted_unaligned CPTAC3 18275a18-20bd-45fc-af1e-e340d86a97c6 7abf5400d7fcd146a1cbf97a54e04953 {"aliquot_tag": "ALQ_7cb3e433", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.RNA-Seq.transcriptome.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.transcriptome.gdc_realn.bam 9037451204 BAM transcriptome harmonized CPTAC3 fab621ef-7690-4b39-8e80-3925281a9282 7b605c1307da63a68dbff1ab08268c51 {"aliquot_tag": "ALQ_7cb3e433", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.WGS.N C3N-00334 UCEC WGS blood_normal CPT0018720002 CPT0018720002.WholeGenome.RP-1303.bam 74217601075 BAM submitted_aligned CPTAC3 70eae70f-26a8-4d36-a323-cf8848955952 8761a5015cc1af5b12b2cefed72a9d83 {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00334.WGS.N.hg38 C3N-00334 UCEC WGS blood_normal CPT0018720002 20e9a00b-8692-41fd-b34b-3d1028376f13_gdc_realn.bam 106743124832 BAM harmonized CPTAC3 c11b3b83-b681-4e44-a9ac-7dd3a760752c d8c9d39d605954342c4b9a5d9a4f0fd4 {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00334.WGS.T C3N-00334 UCEC WGS tumor CPT0018570006 CPT0018570006.WholeGenome.RP-1303.bam 64733132800 BAM submitted_aligned CPTAC3 d2c09bca-9ec2-4561-9c8c-7e6ee68e5eb8 4799a373cbcf07432d87a615c0433741 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.WGS.T.hg38 C3N-00334 UCEC WGS tumor CPT0018570006 0080c2ce-959e-42cc-8cbb-9ba2a91410e3_gdc_realn.bam 95130864531 BAM harmonized CPTAC3 6cc33674-26cb-4b7d-abc1-76081bda58ba ac9d432f2195f84c961d2a4dd08ddd50 {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.WXS.N C3N-00334 UCEC WXS blood_normal CPT0018720002 CPT0018720002.WholeExome.RP-1303.bam 26336838968 BAM submitted_aligned CPTAC3 698bdc5a-57cd-446d-999d-d4982ebb1904 0d1609609677a116009ca1354db097f4 {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00334.WXS.N.hg38 C3N-00334 UCEC WXS blood_normal CPT0018720002 20e9a00b-8692-41fd-b34b-3d1028376f13_gdc_realn.bam 36115144269 BAM harmonized CPTAC3 5c7c8278-74e6-4c50-9f43-e1977bc3bc4a 38f8360de1c772b926acaaf07315d36e {"aliquot_tag": "ALQ_6e4913c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00334.WXS.T C3N-00334 UCEC WXS tumor CPT0018570006 CPT0018570006.WholeExome.RP-1303.bam 26958814572 BAM submitted_aligned CPTAC3 8f11fde6-a7f1-47bc-acb8-b441627fc49b cfe8d46da44a8a35e3e199d0970955ac {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00334.WXS.T.hg38 C3N-00334 UCEC WXS tumor CPT0018570006 0080c2ce-959e-42cc-8cbb-9ba2a91410e3_gdc_realn.bam 37329836027 BAM harmonized CPTAC3 a6837fa3-b3d6-491e-91eb-e0b72fcbc5d8 cc4643f82a071652bb29fa9d4f2602ba {"aliquot_tag": "ALQ_ec0cf9a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.MethArray.Green.T C3N-00335 UCEC Methylation_Array tumor CPT0018790006 202178770008_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f9026b2a-d941-4a5c-9b5d-ac35e1c11064 6cd02d0fe35ddb2a5477cb08fcec6f6f {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.MethArray.Red.T C3N-00335 UCEC Methylation_Array tumor CPT0018790006 202178770008_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 78238b15-f06c-4c1b-b3f5-4b4a93728c4e 0c26d22a648a4d052df5b6511f15ac47 {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.miRNA-Seq.S4_L003_R1.T C3N-00335 UCEC miRNA-Seq tumor CPT0018790009 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L003_R1_001.unaln.bam 233646266 BAM S4_L003_R1 submitted_unaligned CPTAC3 2094a704-5203-4cd1-8577-f818ddc7d9b0 22c2575cc491d155fc58e6e9e0856a4a {"aliquot_tag": "ALQ_8e4bfb59", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.miRNA-Seq.T.hg38 C3N-00335 UCEC miRNA-Seq tumor CPT0018790009 14f10910-4d4c-4546-89fe-7f0a29621689_mirnaseq_gdc_realn.bam 254851396 BAM harmonized CPTAC3 9748b2c5-bdc4-436f-bffe-db0efeaf1624 975fd6fc3e59154e3d7f7538ab29942f {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.RNA-Seq.chimeric.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.chimeric.gdc_realn.bam 111868523 BAM chimeric harmonized CPTAC3 8e55906a-9e4d-4986-bcb5-4caedc9fdbe5 e6cd9a01203355bf7fb561868f29bf03 {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.RNA-Seq.genomic.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.genomic.gdc_realn.bam 7294226631 BAM genomic harmonized CPTAC3 d6fef36b-fcde-4aa3-a7e7-d5938e31806f 85e344f4d04b445ac3a66a2a049adf6d {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.RNA-Seq.S13_L006_R1.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R1_001.fastq.gz 3547291578 FASTQ S13_L006_R1 submitted_unaligned CPTAC3 ed41b710-e03a-402f-a5f5-7edd980641ae f4244cac9a9cbf43fca27daa02ee1fe6 {"aliquot_tag": "ALQ_8e4bfb59", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.RNA-Seq.S13_L006_R2.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R2_001.fastq.gz 3865592246 FASTQ S13_L006_R2 submitted_unaligned CPTAC3 71b23a8a-c3a4-4c35-bb58-f03e9e6d8da0 c55d008c1cdaedb7236f90f22acab809 {"aliquot_tag": "ALQ_8e4bfb59", "sample": "S13", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.RNA-Seq.transcriptome.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.transcriptome.gdc_realn.bam 11558082184 BAM transcriptome harmonized CPTAC3 01ae5046-7b14-48d9-a16d-f2009830d649 ae4f73bf9ed4b1e7e71ecb55d6936ef8 {"aliquot_tag": "ALQ_8e4bfb59", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.WGS.N C3N-00335 UCEC WGS blood_normal CPT0018910002 CPT0018910002.WholeGenome.RP-1303.bam 67299008998 BAM submitted_aligned CPTAC3 77c78fe7-1def-4cad-aca6-785757929fbd a58f952ff2d7d7127c4cd50c49f650a6 {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00335.WGS.N.hg38 C3N-00335 UCEC WGS blood_normal CPT0018910002 360ce993-b06e-488c-8d6b-645b93688df0_gdc_realn.bam 98373954956 BAM harmonized CPTAC3 90e40803-c8e8-42d5-892c-31d26341bab7 f51435d80db950a9bd16cd88a1b9d8b7 {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00335.WGS.T C3N-00335 UCEC WGS tumor CPT0018790006 CPT0018790006.WholeGenome.RP-1303.bam 59355858700 BAM submitted_aligned CPTAC3 7dec1b78-546b-4618-937a-f28598215707 6eb382d15910e5f329576ee26aca637b {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.WGS.T.hg38 C3N-00335 UCEC WGS tumor CPT0018790006 27358361-30f1-497e-aec1-95d130c16820_gdc_realn.bam 85910435126 BAM harmonized CPTAC3 bd8cc186-dc1e-407f-9250-4615d7e84c57 555621da7bbb5cdb4b6c4adc09ea64af {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.WXS.N C3N-00335 UCEC WXS blood_normal CPT0018910002 CPT0018910002.WholeExome.RP-1303.bam 25991356544 BAM submitted_aligned CPTAC3 50bc0004-e7a5-480b-b488-d85d405a3c0e fe624e5e1caaf8d8c26d7fab1dbffc7b {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00335.WXS.N.hg38 C3N-00335 UCEC WXS blood_normal CPT0018910002 360ce993-b06e-488c-8d6b-645b93688df0_gdc_realn.bam 36319602491 BAM harmonized CPTAC3 30e9f0dd-467c-4332-8d66-bff36f698928 47c7f2a28d938c902903cce996b4f7bd {"aliquot_tag": "ALQ_13e30860", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00335.WXS.T C3N-00335 UCEC WXS tumor CPT0018790006 CPT0018790006.WholeExome.RP-1303.bam 25893407766 BAM submitted_aligned CPTAC3 d557066f-c9ff-4d82-b010-b89d1da90aca e9932e95011734ce21b7ba0550894b07 {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00335.WXS.T.hg38 C3N-00335 UCEC WXS tumor CPT0018790006 27358361-30f1-497e-aec1-95d130c16820_gdc_realn.bam 35503064581 BAM harmonized CPTAC3 d6c873cf-c90d-4c3b-8b69-2c51dcf49fa4 3f66cd9d4f5a52c401de8b9fdbf44838 {"aliquot_tag": "ALQ_1ef4e6c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.MethArray.Green.T C3N-00337 UCEC Methylation_Array tumor CPT0018960006 202178770045_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c83e2593-9bc2-486c-88b8-36a039ddb2ce 7dc4017799a5f180936053a4a3100d3a {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.MethArray.Red.T C3N-00337 UCEC Methylation_Array tumor CPT0018960006 202178770045_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 343af149-8fab-4bcc-8021-6872f53e449f ad3ed79579ab9b342cb771826dbf8862 {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.miRNA-Seq.S15_L003_R1.T C3N-00337 UCEC miRNA-Seq tumor CPT0018960013 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L003_R1_001.unaln.bam 203032469 BAM S15_L003_R1 submitted_unaligned CPTAC3 c2d13145-6230-4249-a9b2-2deaa36a9c1f c4780de5e914599476e62aee72ae2cd3 {"aliquot_tag": "ALQ_cfdfd5a7", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.miRNA-Seq.T.hg38 C3N-00337 UCEC miRNA-Seq tumor CPT0018960013 e28252c9-c297-422c-b8f1-d229d5002698_mirnaseq_gdc_realn.bam 219327453 BAM harmonized CPTAC3 553a72ec-de1a-45e6-9f15-a66f519c4956 ae1f8aaec038156418c1ebe37f5d6e6d {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.RNA-Seq.chimeric.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.chimeric.gdc_realn.bam 86687550 BAM chimeric harmonized CPTAC3 edf5e11c-c0be-4239-8e73-278feeb718b9 f72206d772e7e99d547b409e1309d504 {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.RNA-Seq.genomic.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.genomic.gdc_realn.bam 7381831019 BAM genomic harmonized CPTAC3 d642036b-8c99-43e9-b708-6fd2e36b819f a31c7b941555d9542058dbe881eb6e40 {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.RNA-Seq.S7_L005_R1.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R1_001.fastq.gz 3574102098 FASTQ S7_L005_R1 submitted_unaligned CPTAC3 2ed2fd9d-d69e-4924-bcac-555bfa24030e 3026ba98c89ef90ad8012d159148aede {"aliquot_tag": "ALQ_cfdfd5a7", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.RNA-Seq.S7_L005_R2.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R2_001.fastq.gz 3742480576 FASTQ S7_L005_R2 submitted_unaligned CPTAC3 6d9108cf-e7d8-4040-8e1d-3f707ee381c8 6e98311f6d227ca5a52357b0e3c19999 {"aliquot_tag": "ALQ_cfdfd5a7", "sample": "S7", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.RNA-Seq.transcriptome.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.transcriptome.gdc_realn.bam 8391817521 BAM transcriptome harmonized CPTAC3 84946eb2-18d9-49ad-b972-edcad384906e 30bb498278383db856cae49013378cb9 {"aliquot_tag": "ALQ_cfdfd5a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.WGS.N C3N-00337 UCEC WGS blood_normal CPT0019100002 CPT0019100002.WholeGenome.RP-1303.bam 70728738325 BAM submitted_aligned CPTAC3 f5ba38e4-9ecb-4737-9eee-6d71c65ef4cf 1cf6c0884fe5643918023e61abed3b64 {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00337.WGS.N.hg38 C3N-00337 UCEC WGS blood_normal CPT0019100002 cec2f45d-c155-483f-97df-221ca574f6b9_gdc_realn.bam 105361244155 BAM harmonized CPTAC3 0686705a-97fa-4c41-b9fa-15664a310849 b6238198f5cfb0cf75eaeefb8faca143 {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00337.WGS.T C3N-00337 UCEC WGS tumor CPT0018960006 CPT0018960006.WholeGenome.RP-1303.bam 65343177951 BAM submitted_aligned CPTAC3 71dac1ca-9553-49b3-942a-0bee18cf34d4 c53157c9f1e56ab0b852dc90e6a8b51f {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.WGS.T.hg38 C3N-00337 UCEC WGS tumor CPT0018960006 9a2dfd9e-6dd6-47a2-8e80-d48625d4e780_gdc_realn.bam 94823040903 BAM harmonized CPTAC3 a09c225a-3e70-41ff-9a0e-0900c7be4f69 fd8542ebc006c9516035b75f16127e8d {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.WXS.N C3N-00337 UCEC WXS blood_normal CPT0019100002 CPT0019100002.WholeExome.RP-1303.bam 34306966546 BAM submitted_aligned CPTAC3 94c8c234-c469-4230-a494-dd6129561aa4 1d9c7e5c21815d349cafa330d3805437 {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00337.WXS.N.hg38 C3N-00337 UCEC WXS blood_normal CPT0019100002 cec2f45d-c155-483f-97df-221ca574f6b9_gdc_realn.bam 48416609578 BAM harmonized CPTAC3 7183ee6a-cb23-44bc-becd-c98704733392 9e1c8d8d0091ad22fcfb4719980b4eed {"aliquot_tag": "ALQ_64a7a809", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00337.WXS.T C3N-00337 UCEC WXS tumor CPT0018960006 CPT0018960006.WholeExome.RP-1303.bam 31372168477 BAM submitted_aligned CPTAC3 98c496b5-ba13-40d1-88ca-c83251d259ea 6b750484f66c25624d74b35599ada661 {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00337.WXS.T.hg38 C3N-00337 UCEC WXS tumor CPT0018960006 9a2dfd9e-6dd6-47a2-8e80-d48625d4e780_gdc_realn.bam 43163280079 BAM harmonized CPTAC3 a8043bba-addf-4b7b-9349-ad547fc81f15 0bd585223efcb2fe0e25fd3a24e2057e {"aliquot_tag": "ALQ_a6ae1069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.MethArray.Green.T C3N-00339 UCEC Methylation_Array tumor CPT0020530009 202184990063_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d09e637f-6d3e-4181-ad4a-b7bf43384be1 0523c059ee9c4330ee6f2c02986f332b {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.MethArray.Red.T C3N-00339 UCEC Methylation_Array tumor CPT0020530009 202184990063_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 5ef8b425-dba9-4397-9fc3-2128796f0cec 75ca86c253262cd172ba9d6de80c4b61 {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.miRNA-Seq.S41_L004_R1.T C3N-00339 UCEC miRNA-Seq tumor CPT0020530006 181113_UNC31-K00269_0164_AH23NNBBXY_GTAGAG_S41_L004_R1_001.unaln.bam 164878094 BAM S41_L004_R1 submitted_unaligned CPTAC3 40eb40fa-3990-4e01-8769-8d59ec5edc00 a02ef6518139ac89347da1110c305cfd {"aliquot_tag": "ALQ_a4ec16e6", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.miRNA-Seq.T.hg38 C3N-00339 UCEC miRNA-Seq tumor CPT0020530006 919ba823-cf11-4ef1-9848-21cfb3cb19d2_mirnaseq_gdc_realn.bam 176606533 BAM harmonized CPTAC3 23215099-1d30-4423-90f7-dd4364387bc2 a054fd6ae3a403088c45299d28f66836 {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.RNA-Seq.chimeric.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.chimeric.gdc_realn.bam 75246930 BAM chimeric harmonized CPTAC3 ec1c9468-dd54-4100-8549-18d853cfee60 0ec453a257ee051631d42c243d7c7a1d {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.RNA-Seq.genomic.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.genomic.gdc_realn.bam 6545746008 BAM genomic harmonized CPTAC3 2655eeb5-10b2-45e4-8256-42aa598faa93 2d930cdf9eb3a2951925affd1fa3a4b8 {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.RNA-Seq.S9_L003_R1.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R1_001.fastq.gz 3440816927 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 b583347d-5091-47aa-88f4-f13b6ccdbc9b 15b61845fa7ae85615b1703b468fa885 {"aliquot_tag": "ALQ_a4ec16e6", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.RNA-Seq.S9_L003_R2.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R2_001.fastq.gz 3737270066 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 fb5ba732-fdb9-4fb1-a189-ca27dc978cfd 209bb41d729de6f50ecafb1be32c1add {"aliquot_tag": "ALQ_a4ec16e6", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.RNA-Seq.transcriptome.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.transcriptome.gdc_realn.bam 9469088797 BAM transcriptome harmonized CPTAC3 16e2bb37-9c78-4a82-909f-c4d2343444be e2fd9f199328d2303e3d8d00f363fdfa {"aliquot_tag": "ALQ_a4ec16e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.WGS.N C3N-00339 UCEC WGS blood_normal CPT0020600002 CPT0020600002.WholeGenome.RP-1303.bam 55829048756 BAM submitted_aligned CPTAC3 3948c348-84d7-4a2d-a1bb-5f8f71290d3d e8c00f48961f04a01e6350ca21cc2135 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00339.WGS.N.hg38 C3N-00339 UCEC WGS blood_normal CPT0020600002 f9f0e294-4ac5-4fca-b75c-bdaa29f51037_gdc_realn.bam 79699800791 BAM harmonized CPTAC3 508fe33e-3cf2-4659-be9f-669d5d54e09d 834536031d90ac38dc61233d378c5c20 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00339.WGS.T C3N-00339 UCEC WGS tumor CPT0020530009 CPT0020530009.WholeGenome.RP-1303.bam 69208927735 BAM submitted_aligned CPTAC3 dc3719ac-c814-4d48-ad58-8e22dfc5361c e1abe594d04137d2f509a8cac9c0266a {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.WGS.T.hg38 C3N-00339 UCEC WGS tumor CPT0020530009 8f03933b-8c46-46b6-9b33-ca5d62d9f61d_gdc_realn.bam 97992009121 BAM harmonized CPTAC3 163c572a-c9a2-4fd6-a4e4-2471c34b02d1 0eccdeea1e52276a0445fa2792132295 {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.WXS.N C3N-00339 UCEC WXS blood_normal CPT0020600002 CPT0020600002.WholeExome.RP-1303.bam 23686937948 BAM submitted_aligned CPTAC3 4073402b-0ed8-45ed-a6fa-e53758b6a568 edc74d0c44acb63c4fee7f86adba4f74 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00339.WXS.N.hg38 C3N-00339 UCEC WXS blood_normal CPT0020600002 f9f0e294-4ac5-4fca-b75c-bdaa29f51037_gdc_realn.bam 32737528434 BAM harmonized CPTAC3 3f967a5c-a804-4979-9bff-ccf26929a35c ed5759deec3e6c17aa23c9dc7da4c099 {"aliquot_tag": "ALQ_62b5da81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00339.WXS.T C3N-00339 UCEC WXS tumor CPT0020530009 CPT0020530009.WholeExome.RP-1303.bam 29841892036 BAM submitted_aligned CPTAC3 8d561558-33a7-43ce-82ee-16393ac3aa86 e0bd38829b4a7801442e4eeb42fcb0ad {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00339.WXS.T.hg38 C3N-00339 UCEC WXS tumor CPT0020530009 8f03933b-8c46-46b6-9b33-ca5d62d9f61d_gdc_realn.bam 40070022155 BAM harmonized CPTAC3 0c0a86f8-c867-41de-a46c-14d6df8e69bf 8ed92663d94662a95d35290dec01a447 {"aliquot_tag": "ALQ_34530b77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.MethArray.Green.T C3N-00340 UCEC Methylation_Array tumor CPT0022620006 202163550115_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0dde79af-7751-4895-851e-3b4cdba635b2 3b8cc7714b44bdec0abdd3ea2bdd272f {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.MethArray.Red.T C3N-00340 UCEC Methylation_Array tumor CPT0022620006 202163550115_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 5d7a985a-8673-4205-acf8-95ab66250c9c a7020e91c603b68c310c63a9766ebb27 {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.miRNA-Seq.S46_L004_R1.T C3N-00340 UCEC miRNA-Seq tumor CPT0022620009 181113_UNC31-K00269_0164_AH23NNBBXY_CGTACG_S46_L004_R1_001.unaln.bam 318161326 BAM S46_L004_R1 submitted_unaligned CPTAC3 5504e0ee-b629-4d6e-a1ba-acc4ccab9b74 f1cab898be11d87f16122a8619468092 {"aliquot_tag": "ALQ_18384140", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.miRNA-Seq.T.hg38 C3N-00340 UCEC miRNA-Seq tumor CPT0022620009 d5949ff1-adfa-4197-808a-c3178d4c5ccf_mirnaseq_gdc_realn.bam 339831034 BAM harmonized CPTAC3 d7c1732f-2edc-4aac-847f-d180d97b06af fdba94c72ddc363bc212bfa894096d2d {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.RNA-Seq.chimeric.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.chimeric.gdc_realn.bam 80805009 BAM chimeric harmonized CPTAC3 28561b99-5d17-444b-bd77-f32d8b4fe0e3 ce1ca1b552a9eeaa7977daa763805108 {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.RNA-Seq.genomic.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.genomic.gdc_realn.bam 11459517217 BAM genomic harmonized CPTAC3 4d1c3492-cdbb-4646-a87e-efc6bd9ad55d 9e73a8b0ceec324798af16e8491b44e0 {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.RNA-Seq.S23_L006_R1.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R1_001.fastq.gz 5338738796 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 9c6560e4-984b-4de4-b784-06e2d358ee2d 9dd9163ff6d694a7f74a8cfaed94a456 {"aliquot_tag": "ALQ_18384140", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.RNA-Seq.S23_L006_R2.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R2_001.fastq.gz 5783172010 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 b3de2a7e-ac96-42dd-bcf2-61f14df637c6 45bbed79dbd98b89b72f86cb3d1246b6 {"aliquot_tag": "ALQ_18384140", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.RNA-Seq.transcriptome.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.transcriptome.gdc_realn.bam 15484728078 BAM transcriptome harmonized CPTAC3 7b256dbf-514a-4388-8744-bcaef5223d95 89406356056561b9d7e898b38bbdcbd9 {"aliquot_tag": "ALQ_18384140", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.WGS.N C3N-00340 UCEC WGS blood_normal CPT0020710002 CPT0020710002.WholeGenome.RP-1303.bam 67600994210 BAM submitted_aligned CPTAC3 7a30f8e4-db7d-46e7-9775-e0cfa59c6e1d 1a3da6b5c7224699c95b49386828bc4b {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00340.WGS.N.hg38 C3N-00340 UCEC WGS blood_normal CPT0020710002 473ea35b-e97c-4d26-9321-84efd530f725_gdc_realn.bam 97139036145 BAM harmonized CPTAC3 32560c79-2b82-4441-b1f2-fbd2838043ae ed36d5f0c20f6b9e6dbfaf002ad3b55a {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00340.WGS.T C3N-00340 UCEC WGS tumor CPT0022620006 CPT0022620006.WholeGenome.RP-1303.bam 67100265324 BAM submitted_aligned CPTAC3 b8945bd3-fed5-44d7-a315-93f127ec6686 08fa318b6face7fa7f32e374d5eb889e {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.WGS.T.hg38 C3N-00340 UCEC WGS tumor CPT0022620006 bdc0043c-0eb0-4495-9620-7ede4bac168c_gdc_realn.bam 96198687097 BAM harmonized CPTAC3 bdd16566-8a24-4e7b-9c62-d5d9b84196eb 9d9e397189aeee515f2f3351bd549ecd {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.WXS.N C3N-00340 UCEC WXS blood_normal CPT0020710002 CPT0020710002.WholeExome.RP-1303.bam 28761775786 BAM submitted_aligned CPTAC3 dd13ec1a-c913-4f22-803c-055eb8e583f6 9a3793a757cc7313b3c469229bc07f33 {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00340.WXS.N.hg38 C3N-00340 UCEC WXS blood_normal CPT0020710002 473ea35b-e97c-4d26-9321-84efd530f725_gdc_realn.bam 39186264136 BAM harmonized CPTAC3 4f7981ac-194f-4927-ae66-97a7476372de 1ef082b34c7f7fd1b1c1c6a05c10f7f4 {"aliquot_tag": "ALQ_94892094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00340.WXS.T C3N-00340 UCEC WXS tumor CPT0022620006 CPT0022620006.WholeExome.RP-1303.bam 23378429144 BAM submitted_aligned CPTAC3 4a86747f-73ce-4f96-99c0-5dbf356dc061 c90b1d8ecbcd3018fe495f5892b91f46 {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00340.WXS.T.hg38 C3N-00340 UCEC WXS tumor CPT0022620006 bdc0043c-0eb0-4495-9620-7ede4bac168c_gdc_realn.bam 31790294330 BAM harmonized CPTAC3 8c0129ea-4649-403e-9a53-2853c81782f0 626f0ecc6eb43935d182c32939787d16 {"aliquot_tag": "ALQ_88875cd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.ADD_b4f9a5c.miRNA-Seq.S33_L004_R1.T C3N-00377 UCEC miRNA-Seq tumor CPT0021650006 181012_UNC32-K00270_0124_AH223CBBXY_CTTGTA_S33_L004_R1_001.unaln.bam 230161002 BAM S33_L004_R1 submitted_unaligned CPTAC3 e1187496-38da-40c6-9198-de1d986b913c aa8c449632276952ba7d9b52684f64c0 {"aliquot_tag": "ADD_b4f9a5c", "aliquot_annotation": "Duplicate item: Additional RNA requested", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.ADD_b4f9a5c.miRNA-Seq.T.hg38 C3N-00377 UCEC miRNA-Seq tumor CPT0021650006 4c94aef0-feb3-4b36-b713-4a95a0304f86_mirnaseq_gdc_realn.bam 258615587 BAM harmonized CPTAC3 256d0167-27f8-43e8-b020-0262c620d57f 0785ff56bb75f3babbd4d862a957852e {"aliquot_tag": "ADD_b4f9a5c", "aliquot_annotation": "Duplicate item: Additional RNA requested", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.MethArray.Green.T C3N-00377 UCEC Methylation_Array tumor CPT0021650009 202178770111_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1d9c8cbc-c76b-4122-998b-87193e4b0bf7 f3e06ecff3c4d3ad843faf88ece826e3 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.MethArray.Red.T C3N-00377 UCEC Methylation_Array tumor CPT0021650009 202178770111_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e875e261-9713-466a-b7bb-e6f460fa8270 25e6b3e80f7b800c6aa34f61e4aab60f {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.RNA-Seq.chimeric.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.chimeric.gdc_realn.bam 56432488 BAM chimeric harmonized CPTAC3 f14c7adc-de4c-4829-8a0b-16888fbd5c3f a36b4ef82dcd75e46316a2702d21c30c {"aliquot_tag": "ALQ_623e5f92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.RNA-Seq.genomic.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.genomic.gdc_realn.bam 8565063148 BAM genomic harmonized CPTAC3 1a302d4d-f2e2-4484-96bc-6d21b63a6525 2eb4cad5d77b14f273fc26945b014394 {"aliquot_tag": "ALQ_623e5f92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.RNA-Seq.S8_L003_R1.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R1_001.fastq.gz 4517871402 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 927fd63f-62e5-491b-8c64-bdb58cb0881c 874266381c0435be1d3049f93eb1aa43 {"aliquot_tag": "ALQ_623e5f92", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.RNA-Seq.S8_L003_R2.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R2_001.fastq.gz 4774004137 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 bc45d610-dace-4837-a41d-4a4ea3cb8b5c ffc86c6e38bac110b4e1cf1d5787f3e7 {"aliquot_tag": "ALQ_623e5f92", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.RNA-Seq.transcriptome.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.transcriptome.gdc_realn.bam 11038047736 BAM transcriptome harmonized CPTAC3 28c187aa-a0cc-423b-93ba-13de08e9ff99 eb0dc54da955bd1bd36c869c09abd2fa {"aliquot_tag": "ALQ_623e5f92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.WGS.N C3N-00377 UCEC WGS blood_normal CPT0021710002 CPT0021710002.WholeGenome.RP-1303.bam 63545834158 BAM submitted_aligned CPTAC3 eaf75e80-765f-4842-a58f-c59ba336a786 c5054d3b98f7af11470af9056c6d98e5 {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00377.WGS.N.hg38 C3N-00377 UCEC WGS blood_normal CPT0021710002 e41f9914-e7d0-41c2-bf1c-7cc9ef6c2a8c_gdc_realn.bam 92298249123 BAM harmonized CPTAC3 d41328fd-e13e-41ad-affa-a32acce44ecc 243bbdd70a4c6ba44a17fcf10a1f049e {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00377.WGS.T C3N-00377 UCEC WGS tumor CPT0021650009 CPT0021650009.WholeGenome.RP-1303.bam 55161803689 BAM submitted_aligned CPTAC3 ba90e789-0c80-481e-8109-bad3e61376f9 8254d3ef797f205f8b6fc93a8fede0d3 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.WGS.T.hg38 C3N-00377 UCEC WGS tumor CPT0021650009 8886551e-e603-46cd-8f0e-f787821cbb00_gdc_realn.bam 80825463693 BAM harmonized CPTAC3 33b3fd40-ac00-4ae7-9643-e32d8fe38859 107e15c420b0fedd7d7f59b7376c20a6 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.WXS.N C3N-00377 UCEC WXS blood_normal CPT0021710002 CPT0021710002.WholeExome.RP-1303.bam 28725354425 BAM submitted_aligned CPTAC3 bd05fb6c-0e21-451f-a377-bb10488c537e c53d4d9761e6ac422953bc7c169c6901 {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00377.WXS.N.hg38 C3N-00377 UCEC WXS blood_normal CPT0021710002 e41f9914-e7d0-41c2-bf1c-7cc9ef6c2a8c_gdc_realn.bam 39052613058 BAM harmonized CPTAC3 1cecc8fa-07b8-4945-8bb9-2cd88ef2561f 157931051a486ff680f4ed216d6be33c {"aliquot_tag": "ALQ_32fe2b20", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00377.WXS.T C3N-00377 UCEC WXS tumor CPT0021650009 CPT0021650009.WholeExome.RP-1303.bam 25125237646 BAM submitted_aligned CPTAC3 eecca0a0-8639-4107-b6f1-1f49b32a5b0e 73c56c7435d3902d009ac9f8c4a66519 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00377.WXS.T.hg38 C3N-00377 UCEC WXS tumor CPT0021650009 8886551e-e603-46cd-8f0e-f787821cbb00_gdc_realn.bam 34209112955 BAM harmonized CPTAC3 3de00368-7da2-4f00-8396-3eb51f1b4b97 54dad050dd676d937023013db4d918c0 {"aliquot_tag": "ALQ_9bf087cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.MethArray.Green.T C3N-00379 UCEC Methylation_Array tumor CPT0015520009 202184990069_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 37b2bd3d-2a0e-4d7a-ab42-9c1f739cae24 d250e0068efe5644e83cdecbe57d3609 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.MethArray.Red.T C3N-00379 UCEC Methylation_Array tumor CPT0015520009 202184990069_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 cb0fbac3-3d16-4229-b413-d932d312076e 902b6f1b5935b1dcc402dc133f249d20 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.miRNA-Seq.S7_L003_R1.T C3N-00379 UCEC miRNA-Seq tumor CPT0015520006 181113_UNC31-K00269_0164_AH23NNBBXY_CACGAT_S7_L003_R1_001.unaln.bam 412032907 BAM S7_L003_R1 submitted_unaligned CPTAC3 2352620b-d346-4aa1-8b6b-e717a3129954 64c6ba53e1921bc18c400f29f1deb850 {"aliquot_tag": "ALQ_453b1712", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.miRNA-Seq.T.hg38 C3N-00379 UCEC miRNA-Seq tumor CPT0015520006 a24e6932-70f3-4434-9142-083368ec340e_mirnaseq_gdc_realn.bam 466022560 BAM harmonized CPTAC3 ffda6dd1-34d5-4d15-9ce0-1990ad176d73 525d764652c693da1af01314672507bd {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.RNA-Seq.chimeric.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.chimeric.gdc_realn.bam 109442189 BAM chimeric harmonized CPTAC3 939c373c-f31b-4a0d-babc-0a6be3f8bdd4 1c0beae9afe57d5c1a4943961ad2690e {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.RNA-Seq.genomic.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.genomic.gdc_realn.bam 13723166783 BAM genomic harmonized CPTAC3 45cf5891-1921-4ce5-8db6-a641996c45dd 4342f0a611f26f77d16cc3b9cf7f16ee {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.RNA-Seq.S1_L001_R1.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R1_001.fastq.gz 6517268788 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 8b3b442d-0e88-4e6c-84b0-b4eaae2be844 bbaec1bf38bdfa7b42683a2a9d75ab0e {"aliquot_tag": "ALQ_453b1712", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.RNA-Seq.S1_L001_R2.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R2_001.fastq.gz 6971123033 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 9c1db68b-16f9-42cd-b818-cd95a5236e11 b5c6ec19a42dc60bb38d788b0489c076 {"aliquot_tag": "ALQ_453b1712", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.RNA-Seq.transcriptome.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.transcriptome.gdc_realn.bam 16290383665 BAM transcriptome harmonized CPTAC3 845d5748-c197-45bd-a695-10acadde37df b84c8bde82a74ccee2121a6d6f54e911 {"aliquot_tag": "ALQ_453b1712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.WGS.N C3N-00379 UCEC WGS blood_normal CPT0015740002 CPT0015740002.WholeGenome.RP-1303.bam 55192139656 BAM submitted_aligned CPTAC3 896e3ea7-e706-4e28-8829-76b6b014c6eb ed29aba9243990ca9a0d9f6fe42d67be {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00379.WGS.N.hg38 C3N-00379 UCEC WGS blood_normal CPT0015740002 0041944a-53b2-47b2-8a4e-d50b00467f10_gdc_realn.bam 80629464047 BAM harmonized CPTAC3 546f1c4f-8040-4463-8bdf-e6b7db95345b a3ca45029de725b2936013c2d45f2ee7 {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00379.WGS.T C3N-00379 UCEC WGS tumor CPT0015520009 CPT0015520009.WholeGenome.RP-1303.bam 69093567058 BAM submitted_aligned CPTAC3 94ebd915-92b5-4f21-a13f-1f78af85f3b3 dd895256f2e877b387eb8ac47e710353 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.WGS.T.hg38 C3N-00379 UCEC WGS tumor CPT0015520009 fcb00b68-150a-4231-9f7b-32cb967f8c23_gdc_realn.bam 101639959383 BAM harmonized CPTAC3 3d01fbb1-f7ce-45be-960f-d4d4fcd68d73 492686151ca1bd6611dc3637f47d20f1 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.WXS.N C3N-00379 UCEC WXS blood_normal CPT0015740002 CPT0015740002.WholeExome.RP-1303.bam 30583089846 BAM submitted_aligned CPTAC3 30ee48c9-4925-4d05-a7b4-23f0e18813f8 a0c1142f7876ebd5e27503a83f314f42 {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00379.WXS.N.hg38 C3N-00379 UCEC WXS blood_normal CPT0015740002 0041944a-53b2-47b2-8a4e-d50b00467f10_gdc_realn.bam 41704433896 BAM harmonized CPTAC3 7828f203-3720-43d3-be43-c834edb7b683 df008cacc55ae3581b61b7dc4446407d {"aliquot_tag": "ALQ_80de87a0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00379.WXS.T C3N-00379 UCEC WXS tumor CPT0015520009 CPT0015520009.WholeExome.RP-1303.bam 23012422494 BAM submitted_aligned CPTAC3 46cbd86d-ddfa-45c8-b52c-22f641f1e678 27b7ed2be6a46c209f3a42e88ac1196e {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00379.WXS.T.hg38 C3N-00379 UCEC WXS tumor CPT0015520009 fcb00b68-150a-4231-9f7b-32cb967f8c23_gdc_realn.bam 31547305183 BAM harmonized CPTAC3 4b47bcc5-e26c-4f9b-944e-d0e1f06ed67c 4908edda85767d2e18a4ea2cc815bae3 {"aliquot_tag": "ALQ_d5840a83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.MethArray.Green.T C3N-00380 CCRCC Methylation_Array tumor CPT0021240009 202184900104_R02C01_Grn.idat 13676256 IDAT Green NA CPTAC3 7b196148-4cfa-4a60-9696-d229f3377fd6 59b841ddd8e8502a64fcc0e6e19208d0 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.MethArray.Red.T C3N-00380 CCRCC Methylation_Array tumor CPT0021240009 202184900104_R02C01_Red.idat 13676256 IDAT Red NA CPTAC3 c7aa0a9f-3f4b-4f88-8abc-9e28fc716d3a c4cf2d353edb1682b4f1ec6ea7c7273a {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.miRNA-Seq.S34_L004_R1.T C3N-00380 CCRCC miRNA-Seq tumor CPT0021240006 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L004_R1_001.unaln.bam 245685015 BAM S34_L004_R1 submitted_unaligned CPTAC3 2b771e29-97f8-41a4-9bb6-64293c84d832 87368efd6b3301485f3b1f711e1a1195 {"aliquot_tag": "ALQ_adbef1fa", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.miRNA-Seq.T.hg38 C3N-00380 CCRCC miRNA-Seq tumor CPT0021240006 1f28faad-eb1a-453c-908c-b1016641056e_mirnaseq_gdc_realn.bam 268196640 BAM harmonized CPTAC3 b2d7f643-80f9-4688-bf2a-076fae00c395 298f036df1c1c82a0aedb0841cc8e594 {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.RNA-Seq.chimeric.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.chimeric.gdc_realn.bam 231090008 BAM chimeric harmonized CPTAC3 843d37bd-4e72-4bd8-a08b-976f9fc00ea2 a368b0d7ab0087f83e322f89cd273551 {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.RNA-Seq.genomic.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.genomic.gdc_realn.bam 7804966886 BAM genomic harmonized CPTAC3 4afe0b0f-6055-4bff-938d-b45502741d4b cb44469ebb0053788f57b283df7b08d9 {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.RNA-Seq.S10_L003_R1.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4253947421 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 bb233eea-a1a8-4de1-8b0f-8be9aca0debf 026ba4b0db034ee9e8b7463b93aed48d {"aliquot_tag": "ALQ_adbef1fa", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.RNA-Seq.S10_L003_R2.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 4626882444 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 6eaa6689-369f-438c-988a-719096d578cb 42f4a7c2d73ef458394551562239f0d0 {"aliquot_tag": "ALQ_adbef1fa", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.RNA-Seq.transcriptome.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.transcriptome.gdc_realn.bam 10845437572 BAM transcriptome harmonized CPTAC3 046ad9e9-9eb1-4b07-9e0a-85a9e90c9825 f07e787da357abe75196ecba8d6756ce {"aliquot_tag": "ALQ_adbef1fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.WGS.N C3N-00380 CCRCC WGS blood_normal CPT0021300002 CPT0021300002.WholeGenome.RP-1303.bam 62774576116 BAM submitted_aligned CPTAC3 9a341d9e-938c-4226-8064-060b81e95bd2 55c52b71c378391252ba3b9347a5216d {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00380.WGS.N.hg38 C3N-00380 CCRCC WGS blood_normal CPT0021300002 f6488f85-101a-4703-af6d-d7a024f8294f_gdc_realn.bam 92154085922 BAM harmonized CPTAC3 f87df189-3e47-4980-8511-1ad15b202e5d 79f24a3c132d0eb7f312fe9b77a35893 {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00380.WGS.T C3N-00380 CCRCC WGS tumor CPT0021240009 CPT0021240009.WholeGenome.RP-1303.bam 58153179192 BAM submitted_aligned CPTAC3 e49258a0-810a-43b6-bbbf-828a5e09e653 9b79949137c58fdfd3a49628eca30ae7 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.WGS.T.hg38 C3N-00380 CCRCC WGS tumor CPT0021240009 80e3b7fb-78b0-4ea8-9792-264a50cab826_gdc_realn.bam 85768591244 BAM harmonized CPTAC3 dbdebb34-5c24-4ce0-8ae4-5af6a08a66e1 a35c74b529cf7a82527ca2ce2655fdc1 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.WXS.N C3N-00380 CCRCC WXS blood_normal CPT0021300002 CPT0021300002.WholeExome.RP-1303.bam 21368218150 BAM submitted_aligned CPTAC3 5d756390-c9f6-49fd-b090-0ab5d54713f9 161df01f06f0f8b5f22df7b5e8ae9d55 {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00380.WXS.N.hg38 C3N-00380 CCRCC WXS blood_normal CPT0021300002 f6488f85-101a-4703-af6d-d7a024f8294f_gdc_realn.bam 29225050475 BAM harmonized CPTAC3 d608689d-02ca-414d-968d-ae8a9256ebe0 04e8e25e3819663ddad032769f2c67b8 {"aliquot_tag": "ALQ_940f4086", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00380.WXS.T C3N-00380 CCRCC WXS tumor CPT0021240009 CPT0021240009.WholeExome.RP-1303.bam 28875237553 BAM submitted_aligned CPTAC3 d713a110-92e9-46e6-8bf1-990ce88179cc 41945b64cd428b36c5116209d5e36497 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00380.WXS.T.hg38 C3N-00380 CCRCC WXS tumor CPT0021240009 80e3b7fb-78b0-4ea8-9792-264a50cab826_gdc_realn.bam 39445228936 BAM harmonized CPTAC3 a8238352-f2db-4c2d-889e-998368b4d1ff 99c9989181e2d4210824e04340f40a89 {"aliquot_tag": "ALQ_3d01ec6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.MethArray.Green.T C3N-00383 UCEC Methylation_Array tumor CPT0022830006 202184990066_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 549d094d-f346-40a4-b512-16879f811ee1 9322be065450d2f979e5e67fce4b8a7f {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.MethArray.Red.T C3N-00383 UCEC Methylation_Array tumor CPT0022830006 202184990066_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 cbc1d316-8085-41f3-861e-bf62df5b38c6 23d5b289e1d1e8a5873c0d43139a4528 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.miRNA-Seq.A.hg38 C3N-00383 UCEC miRNA-Seq tissue_normal CPT0022850006 5177c3c4-0491-4e0d-b161-5183ca78ed93_mirnaseq_gdc_realn.bam 358909554 BAM harmonized CPTAC3 63716c1c-1c3d-4751-9380-9964d6d65a5d 0651103546729e306cb5cc41401f943b {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.miRNA-Seq.S13_L006_R1.A C3N-00383 UCEC miRNA-Seq tissue_normal CPT0022850006 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L006_R1_001.unaln.bam 314111891 BAM S13_L006_R1 submitted_unaligned CPTAC3 48ace26e-347d-4b8a-bd4c-03d6ade40448 83f31070ae06325e33e889028d64ec08 {"aliquot_tag": "ALQ_ade1b1", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.miRNA-Seq.S1_L001_R1.T C3N-00383 UCEC miRNA-Seq tumor CPT0022830009 180924_UNC31-K00269_0154_AHWTMLBBXX_ATCACG_S1_L001_R1_001.unaln.bam 191489527 BAM S1_L001_R1 submitted_unaligned CPTAC3 9eb925ca-66d6-4a1d-af69-b1a120ae51b0 253511336d569208eecba3cc5b376e1b {"aliquot_tag": "ALQ_1f520980", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.miRNA-Seq.T.hg38 C3N-00383 UCEC miRNA-Seq tumor CPT0022830009 42d22828-b066-4298-8ba9-2a154bc84418_mirnaseq_gdc_realn.bam 206703975 BAM harmonized CPTAC3 c6f597f5-ebdd-48d4-8dd4-f782a54b796e c08dc91289acf998b314f9d4ae13acac {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.RNA-Seq.chimeric.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.chimeric.gdc_realn.bam 111866115 BAM chimeric harmonized CPTAC3 b411216b-a014-4873-8cff-a0d83133ac83 53d2e769f310113dea18b3925631f760 {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.RNA-Seq.chimeric.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.chimeric.gdc_realn.bam 57641972 BAM chimeric harmonized CPTAC3 2a978c3f-c63c-4b50-9cb3-b68c7585da43 590c55218e499f150521f51593712631 {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.RNA-Seq.genomic.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.genomic.gdc_realn.bam 8217380016 BAM genomic harmonized CPTAC3 90d94d78-1aad-4978-b664-ef1cfe307b9f c59d07e0a170045065da60ac7f4cf017 {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.RNA-Seq.genomic.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.genomic.gdc_realn.bam 6815548328 BAM genomic harmonized CPTAC3 5a1519d6-7d29-4c03-9219-c07c676437d4 d6713acd8712e022af385ecbd0eca83a {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.RNA-Seq.S42_L008_R1.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R1_001.fastq.gz 3716076424 FASTQ S42_L008_R1 submitted_unaligned CPTAC3 d8fdcaab-a8eb-452b-85d3-4e8342a5aa06 f04592afe1a5d37cba0a4a5ee3b5c91f {"aliquot_tag": "ALQ_ade1b1", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.RNA-Seq.S42_L008_R2.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R2_001.fastq.gz 4055967722 FASTQ S42_L008_R2 submitted_unaligned CPTAC3 edbf898c-dc38-48e4-b61b-09f11115d61e b389436034bbb927751c127883759987 {"aliquot_tag": "ALQ_ade1b1", "sample": "S42", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.RNA-Seq.S8_L002_R1.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R1_001.fastq.gz 3168013952 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 d8669320-5d71-4398-b65c-26c820c08fbf 640ce4b62d8a96c140dd9233707d8f93 {"aliquot_tag": "ALQ_1f520980", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.RNA-Seq.S8_L002_R2.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R2_001.fastq.gz 3425858263 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 d98e6375-44c4-45d8-a771-293f086bc52b bd6ad7d75892312f2db62078c1826995 {"aliquot_tag": "ALQ_1f520980", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.RNA-Seq.transcriptome.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.transcriptome.gdc_realn.bam 9017619176 BAM transcriptome harmonized CPTAC3 e3e06a72-21ea-421b-8e49-37d63c32e2be cc466bae2ed9869a4028b4b431db6a0a {"aliquot_tag": "ALQ_ade1b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.RNA-Seq.transcriptome.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.transcriptome.gdc_realn.bam 7223624337 BAM transcriptome harmonized CPTAC3 646ad651-187d-402e-aa19-3f4d2e13b58f fd74211fa8347ad597dce0193aa7b27a {"aliquot_tag": "ALQ_1f520980", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.WGS.A C3N-00383 UCEC WGS tissue_normal CPT0022850009 CPT0022850009.WholeGenome.RP-1303.bam 59719519301 BAM submitted_aligned CPTAC3 e3c6974b-17c8-4a48-b938-b3a5e1eaab44 7727bf11e37e5fef758177e40898d7c0 {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.WGS.A.hg38 C3N-00383 UCEC WGS tissue_normal CPT0022850009 c31e7143-6f53-495b-9ec8-40b1e8200e73_wgs_gdc_realn.bam 87306161117 BAM harmonized CPTAC3 7c58161b-0a29-40c0-92e5-8030115a429c 2a725375e333f5af59417264d6b58e07 {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.WGS.N C3N-00383 UCEC WGS blood_normal CPT0020790002 CPT0020790002.WholeGenome.RP-1303.bam 59526633670 BAM submitted_aligned CPTAC3 34fcdd0a-9742-44ea-8b25-e78c1113a640 e12bedf45518f113caf873c07c720224 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00383.WGS.N.hg38 C3N-00383 UCEC WGS blood_normal CPT0020790002 37e6dbaf-8495-467a-97d2-931a4061ec47_gdc_realn.bam 84679981239 BAM harmonized CPTAC3 ce679c8e-fc60-4adb-87c1-f1d569949992 b13c4d6d3e5bbb40cd64da0029aadc56 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00383.WGS.T C3N-00383 UCEC WGS tumor CPT0022830006 CPT0022830006.WholeGenome.RP-1303.bam 65736746224 BAM submitted_aligned CPTAC3 a2856f40-d5d0-4c51-b5a0-f4b849a4e4a7 4a37c64f293a8db27b5eea66f27609f6 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.WGS.T.hg38 C3N-00383 UCEC WGS tumor CPT0022830006 6e9f2a37-b53b-4017-ae76-ac141191ea9c_gdc_realn.bam 96599511608 BAM harmonized CPTAC3 b48d0c57-1858-4982-9a19-2cd0475d7c36 d59d613ef2d1094f520fa79c0926f165 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.WXS.A C3N-00383 UCEC WXS tissue_normal CPT0022850009 CPT0022850009.WholeExome.RP-1303.bam 37085865099 BAM submitted_aligned CPTAC3 789613cb-e75d-4560-95cf-1df61ba62fa9 c879d0cb1880856f7a444b0044559b4f {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.WXS.A.hg38 C3N-00383 UCEC WXS tissue_normal CPT0022850009 c31e7143-6f53-495b-9ec8-40b1e8200e73_wxs_gdc_realn.bam 51438856605 BAM harmonized CPTAC3 c4aa2702-507d-47d7-b7e0-c5cde301cf00 5416b02dafbd9a4263b45bd30665a562 {"aliquot_tag": "ALQ_9012fc20", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00383.WXS.N C3N-00383 UCEC WXS blood_normal CPT0020790002 CPT0020790002.WholeExome.RP-1303.bam 31801752263 BAM submitted_aligned CPTAC3 26faf9ae-c14f-4bae-b84b-4b0ca9c0161b 7ecada4c2311e220b801968064be3827 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00383.WXS.N.hg38 C3N-00383 UCEC WXS blood_normal CPT0020790002 37e6dbaf-8495-467a-97d2-931a4061ec47_gdc_realn.bam 43876318693 BAM harmonized CPTAC3 c56e7f63-aeaf-4c1e-8f3c-f17d6308709f 58ea02662eb66dd7bbc9d6dfa4dc4ec8 {"aliquot_tag": "ALQ_a4f96b55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00383.WXS.T C3N-00383 UCEC WXS tumor CPT0022830006 CPT0022830006.WholeExome.RP-1303.bam 29721573813 BAM submitted_aligned CPTAC3 5c4a506f-3e9f-48bc-9013-89232633f467 3aeb99350ebaed98bfdc6592a23c33d8 {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00383.WXS.T.hg38 C3N-00383 UCEC WXS tumor CPT0022830006 6e9f2a37-b53b-4017-ae76-ac141191ea9c_gdc_realn.bam 40724584612 BAM harmonized CPTAC3 f47e869d-e5af-4f78-a38e-af3bec29cabd 62d436405a7337d3cbd154d75d61220e {"aliquot_tag": "ALQ_8fed1411", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.MethArray.Green.T C3N-00386 UCEC Methylation_Array tumor CPT0016220009 202184900140_R01C01_Grn.idat 13676262 IDAT Green NA CPTAC3 59334dfd-7bce-4274-b6a5-6151bf3681f8 b2cb3d6cdc6442e7301fd33f8d664551 {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.MethArray.Red.T C3N-00386 UCEC Methylation_Array tumor CPT0016220009 202184900140_R01C01_Red.idat 13676262 IDAT Red NA CPTAC3 1059e477-0937-45d2-b23e-601b044750bf 1569e0474c68075d3a7df5dd08f859a3 {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.miRNA-Seq.S36_L002_R1.T C3N-00386 UCEC miRNA-Seq tumor CPT0016220006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCAACA_S36_L002_R1_001.unaln.bam 218294257 BAM S36_L002_R1 submitted_unaligned CPTAC3 32d3e699-265c-46f2-b0bb-866b12fb19fa ff1028b96b2da0d69a119da4f8f91670 {"aliquot_tag": "ALQ_69d63d37", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.miRNA-Seq.T.hg38 C3N-00386 UCEC miRNA-Seq tumor CPT0016220006 64271378-dce8-4c93-b606-3b7ffdc6cb5c_mirnaseq_gdc_realn.bam 235631699 BAM harmonized CPTAC3 5966008f-f222-49bb-92a0-91d140379001 0eb5d05fa5545ee94a96258efcae0419 {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.RNA-Seq.chimeric.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.chimeric.gdc_realn.bam 41483803 BAM chimeric harmonized CPTAC3 23bb16a1-9db1-47b9-8812-c2511b0ff287 b668969d1444de2dc55207fd9dc96386 {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.RNA-Seq.genomic.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.genomic.gdc_realn.bam 5847848047 BAM genomic harmonized CPTAC3 793b4e2e-f176-4efe-bf34-319e9cae6c84 2c895d2c2d2bfbc1665024723baadaec {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.RNA-Seq.S4_L001_R1.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R1_001.fastq.gz 2686505667 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 68aa44a5-d2a6-4ba3-ba6c-0650d6f945f4 b8f32b50ebf35df55f34a025fc1d2a20 {"aliquot_tag": "ALQ_69d63d37", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.RNA-Seq.S4_L001_R2.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R2_001.fastq.gz 2747222980 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 c5af6b28-5fc3-4a17-bb93-bceb731d1f80 0031607e0c25c1f8c03d1454532754e2 {"aliquot_tag": "ALQ_69d63d37", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.RNA-Seq.transcriptome.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.transcriptome.gdc_realn.bam 6074119516 BAM transcriptome harmonized CPTAC3 7bcee864-4694-405c-933f-29bedb30fffb c4f7f67e3a677c9d809feccdc7851263 {"aliquot_tag": "ALQ_69d63d37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.WGS.N C3N-00386 UCEC WGS blood_normal CPT0016770002 CPT0016770002.WholeGenome.RP-1303.bam 56469368040 BAM submitted_aligned CPTAC3 68dfedf0-0150-4931-bf69-ad8920bc7fdb 3a81962d00cbd0fafe0ec2f20034889f {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00386.WGS.N.hg38 C3N-00386 UCEC WGS blood_normal CPT0016770002 d2d78e06-7a68-485f-a67e-256986fb3006_gdc_realn.bam 81833215150 BAM harmonized CPTAC3 061f7b00-6f79-4554-b725-5778501dbccb db5a948f3f9d69bb35f7941968ffde25 {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00386.WGS.T C3N-00386 UCEC WGS tumor CPT0016220009 CPT0016220009.WholeGenome.RP-1303.bam 60716199101 BAM submitted_aligned CPTAC3 4e5155ae-47e4-4e64-9d94-b04be607985b d57bb874d3db18ba3de253463c2e864a {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.WGS.T.hg38 C3N-00386 UCEC WGS tumor CPT0016220009 86ea43f0-a9c9-47de-959c-d96c72272713_gdc_realn.bam 88603865952 BAM harmonized CPTAC3 160b8957-db23-4cd1-8528-c465bb3739af 51e559b406d15d8b747b7db604e55fda {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.WXS.N C3N-00386 UCEC WXS blood_normal CPT0016770002 CPT0016770002.WholeExome.RP-1303.bam 19546935662 BAM submitted_aligned CPTAC3 8e993334-64df-4f09-b9b3-55487d9af4a8 bf15bfce306e6f90a82528c3210ab51e {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00386.WXS.N.hg38 C3N-00386 UCEC WXS blood_normal CPT0016770002 d2d78e06-7a68-485f-a67e-256986fb3006_gdc_realn.bam 26785724520 BAM harmonized CPTAC3 defc4d49-3f61-4186-8bba-95942de36e01 86d885174fa554bf16f29981990b0c49 {"aliquot_tag": "ALQ_f696e7ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00386.WXS.T C3N-00386 UCEC WXS tumor CPT0016220009 CPT0016220009.WholeExome.RP-1303.bam 26853212937 BAM submitted_aligned CPTAC3 ccff87e8-bc7f-48af-b325-d7a4dfd834a1 3ac8031a447aa07d3e721b89e3a54dbe {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00386.WXS.T.hg38 C3N-00386 UCEC WXS tumor CPT0016220009 86ea43f0-a9c9-47de-959c-d96c72272713_gdc_realn.bam 36456611573 BAM harmonized CPTAC3 d7265bb5-d80b-4b5b-a2b6-2faef6b63167 a84ed718bb8166179915a95d8bcf62ac {"aliquot_tag": "ALQ_f96920a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.MethArray.Green.T C3N-00388 UCEC Methylation_Array tumor CPT0016940008 202184900140_R03C01_Grn.idat 13676261 IDAT Green NA CPTAC3 5740e2cf-dac4-4d2b-b727-b2ba10f8316f 40135991ce00695a9e70ed699aab17f1 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.MethArray.Red.T C3N-00388 UCEC Methylation_Array tumor CPT0016940008 202184900140_R03C01_Red.idat 13676261 IDAT Red NA CPTAC3 3460e5f3-5213-4715-8db0-f4a16a46b65c 49015b378b741a48643354edff944205 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.miRNA-Seq.S1_L002_R1.T C3N-00388 UCEC miRNA-Seq tumor CPT0016940006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATCACG_S1_L002_R1_001.unaln.bam 264446813 BAM S1_L002_R1 submitted_unaligned CPTAC3 5a71c55a-56ce-47fa-b6da-98f0309d164a 10a8a359f54b7bc6589be2c8de32ef81 {"aliquot_tag": "ALQ_8c513854", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.miRNA-Seq.T.hg38 C3N-00388 UCEC miRNA-Seq tumor CPT0016940006 8613bd11-1c1d-4b9c-ac3f-2a37296b0b07_mirnaseq_gdc_realn.bam 296389228 BAM harmonized CPTAC3 53a1d687-11dc-4b2b-b608-288b23a155a4 b06a26971d515e5bfccdda8cbb33a640 {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.RNA-Seq.chimeric.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.chimeric.gdc_realn.bam 38488478 BAM chimeric harmonized CPTAC3 5fda7969-2240-46db-b918-f0f2c5bed301 39eddfeeda7c24ca11fe9cfc35dbec65 {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.RNA-Seq.genomic.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.genomic.gdc_realn.bam 5681853214 BAM genomic harmonized CPTAC3 fff23231-81eb-4fb5-86dc-57b6ede8b801 fd60a20f804999be636aebae1d6ab955 {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.RNA-Seq.S19_L005_R1.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2819089574 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 c6980525-d030-4169-9393-0f1f73fe04a8 10e18b1dabc2e350e6173aa96e10fa8f {"aliquot_tag": "ALQ_8c513854", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.RNA-Seq.S19_L005_R2.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 3037163909 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 a989c255-f970-475b-bd15-7b7103241d2a 5d52268f180cd5bc7d5e936924c885dc {"aliquot_tag": "ALQ_8c513854", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.RNA-Seq.transcriptome.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.transcriptome.gdc_realn.bam 8936885251 BAM transcriptome harmonized CPTAC3 96b87054-9cfd-42ed-abf0-414883292a7e e97aaae11b65fb0c1b1c72148a576ddd {"aliquot_tag": "ALQ_8c513854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.WGS.N C3N-00388 UCEC WGS blood_normal CPT0017290002 CPT0017290002.WholeGenome.RP-1303.bam 59493957946 BAM submitted_aligned CPTAC3 a3aed375-8bfc-4899-8374-78d99f88c99c e6f0bf1f4e6fd66238bf234672a92f1c {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00388.WGS.N.hg38 C3N-00388 UCEC WGS blood_normal CPT0017290002 24dbe8dc-e176-464f-94a0-006aa43bee59_gdc_realn.bam 84661633197 BAM harmonized CPTAC3 ab9ad1e1-c9a1-44a9-b7af-d741d562a6c5 f2042da56c1029ae4c851aeead79ba0f {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00388.WGS.T C3N-00388 UCEC WGS tumor CPT0016940008 CPT0016940008.WholeGenome.RP-1303.bam 70006920964 BAM submitted_aligned CPTAC3 ec54ddaf-3001-4f42-a48f-8be5573897e5 f1b35f3305047f2f089df9e1a3217d56 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.WGS.T.hg38 C3N-00388 UCEC WGS tumor CPT0016940008 2949e6ba-cb37-40b5-a7cf-09978da51025_gdc_realn.bam 101511681450 BAM harmonized CPTAC3 9ef2c309-7943-42d6-9e53-6e0e7186e05a d896fc8248c994c485f1bacb5b3a4571 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.WXS.N C3N-00388 UCEC WXS blood_normal CPT0017290002 CPT0017290002.WholeExome.RP-1303.bam 49092535536 BAM submitted_aligned CPTAC3 61696290-2092-4f8d-9abb-a93ace3dd6bb 2e09b8a740e23f4105854d3fac5bdfd2 {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00388.WXS.N.hg38 C3N-00388 UCEC WXS blood_normal CPT0017290002 24dbe8dc-e176-464f-94a0-006aa43bee59_gdc_realn.bam 66503277260 BAM harmonized CPTAC3 3904884a-aa68-428b-8ed5-76e52c511f38 774ffe53868dfdccbf90426c392ebfe1 {"aliquot_tag": "ALQ_bf1cc38b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00388.WXS.T C3N-00388 UCEC WXS tumor CPT0016940008 CPT0016940008.WholeExome.RP-1303.bam 24523394862 BAM submitted_aligned CPTAC3 552275c4-18b2-4901-91ee-8abe9ad2f896 a4f720892e065fa13d5de35eda3803bd {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00388.WXS.T.hg38 C3N-00388 UCEC WXS tumor CPT0016940008 2949e6ba-cb37-40b5-a7cf-09978da51025_gdc_realn.bam 33329444131 BAM harmonized CPTAC3 168de14c-fd98-4baa-a673-d5ab0db9ad03 1267fc7a4bf76e7e5031c937a37ec166 {"aliquot_tag": "ALQ_6be91553", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.MethArray.Green.T C3N-00389 UCEC Methylation_Array tumor CPT0026270009 202178770109_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 65395592-d3ea-4cfd-9b57-d13a8331250d cf01da25848fc093f5ff1fc4ab417461 {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.MethArray.Red.T C3N-00389 UCEC Methylation_Array tumor CPT0026270009 202178770109_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 5cb86881-7452-498c-b81e-b7f193721105 0fb7deee41cfd6ad373d46955a1c5405 {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.miRNA-Seq.S46_L003_R1.T C3N-00389 UCEC miRNA-Seq tumor CPT0026270006 180924_UNC31-K00269_0154_AHWTMLBBXX_CTTGTA_S46_L003_R1_001.unaln.bam 336681995 BAM S46_L003_R1 submitted_unaligned CPTAC3 757bf83d-ac1a-459e-8068-0f101c643ba4 54b9e948d1c6deb62346d3fdf6025a32 {"aliquot_tag": "ALQ_2fb9b5a4", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.miRNA-Seq.T.hg38 C3N-00389 UCEC miRNA-Seq tumor CPT0026270006 49106ac7-b595-409e-8731-343873ff382b_mirnaseq_gdc_realn.bam 358128221 BAM harmonized CPTAC3 1b7e6fb0-ef9a-46f2-b59a-35986b9efaf4 b104e482d7733fc76f2b9e8807dd1a2f {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.RNA-Seq.chimeric.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.chimeric.gdc_realn.bam 41915284 BAM chimeric harmonized CPTAC3 cd413291-21d0-4e5b-9afb-1907f2553318 08dc3d7862aa0b50a201800ffc2c2c8e {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.RNA-Seq.genomic.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.genomic.gdc_realn.bam 9239958041 BAM genomic harmonized CPTAC3 4fb4f112-7720-4eeb-b71b-01054a51542d 42764f1bbeb139fb66abd941dea5e656 {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.RNA-Seq.S15_L007_R1.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R1_001.fastq.gz 4604678218 FASTQ S15_L007_R1 submitted_unaligned CPTAC3 dd9cffde-1af6-49c4-b230-6b68529c0cab 8e19c7a596c5d2b73df803994dd495a2 {"aliquot_tag": "ALQ_2fb9b5a4", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.RNA-Seq.S15_L007_R2.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R2_001.fastq.gz 4591362098 FASTQ S15_L007_R2 submitted_unaligned CPTAC3 0a029fc1-cddc-482f-8d17-f1aee87e877f ad540af46ed93a285cb0b8a5ba19a74b {"aliquot_tag": "ALQ_2fb9b5a4", "sample": "S15", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.RNA-Seq.transcriptome.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.transcriptome.gdc_realn.bam 9577712664 BAM transcriptome harmonized CPTAC3 b07522df-a529-48b8-b68e-c95971ec35ac 8e345c33e9b8e78cc6194bec4cd156d9 {"aliquot_tag": "ALQ_2fb9b5a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.WGS.N C3N-00389 UCEC WGS blood_normal CPT0026370002 CPT0026370002.WholeGenome.RP-1303.bam 84755426951 BAM submitted_aligned CPTAC3 3107c5e6-ce5b-433c-b273-0dfcfe996477 fca235c9ab501b5f35652fa3d2283932 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00389.WGS.N.hg38 C3N-00389 UCEC WGS blood_normal CPT0026370002 7306b3df-21f1-45bd-8905-0d6be9035f4d_gdc_realn.bam 123230647807 BAM harmonized CPTAC3 ac7408b2-96a1-4736-8e97-f5ae263c3b21 810672fa3112dc300278db2512df6f39 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00389.WGS.T C3N-00389 UCEC WGS tumor CPT0026270009 CPT0026270009.WholeGenome.RP-1303.bam 66183044615 BAM submitted_aligned CPTAC3 fea4f804-33eb-44df-9ef2-5fccb8a8f12a 578e3712008da9d1e88a39a7da5c68de {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.WGS.T.hg38 C3N-00389 UCEC WGS tumor CPT0026270009 5dff9447-7da8-4573-bb38-003f96c1efa7_gdc_realn.bam 95270246574 BAM harmonized CPTAC3 be158832-b452-457b-8964-8ed06a55400f b78a389ce79cc444a0b254fde6ac9c2a {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.WXS.N C3N-00389 UCEC WXS blood_normal CPT0026370002 CPT0026370002.WholeExome.RP-1303.bam 30683478757 BAM submitted_aligned CPTAC3 b6edfded-46d9-4fe0-b25d-d956b242dfc5 9e275efc44a8ecf104c58f454edd03d6 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00389.WXS.N.hg38 C3N-00389 UCEC WXS blood_normal CPT0026370002 7306b3df-21f1-45bd-8905-0d6be9035f4d_gdc_realn.bam 41869982416 BAM harmonized CPTAC3 7f94f3b7-bae8-4766-89d3-eb0361fd142c dd1b833481eb54167b626f61a79297c5 {"aliquot_tag": "ALQ_e388a218", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00389.WXS.T C3N-00389 UCEC WXS tumor CPT0026270009 CPT0026270009.WholeExome.RP-1303.bam 24899999000 BAM submitted_aligned CPTAC3 651675eb-c88d-4b89-a21e-f5bcfd44cc5a 99e184c22689c82e368748c9a4a8cb58 {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00389.WXS.T.hg38 C3N-00389 UCEC WXS tumor CPT0026270009 5dff9447-7da8-4573-bb38-003f96c1efa7_gdc_realn.bam 34095382686 BAM harmonized CPTAC3 a84d1048-c1c0-418a-ac9b-efe0b9dcafbe 52cdf0debb6fbeee4fe439328454e87e {"aliquot_tag": "ALQ_bf06a835", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_503b08df.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017380012 204367470157_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fc63d343-b92d-40d1-8193-972b3e694e7c 348f20fcd73e8afdd70ace31a5c002a0 {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_503b08df.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017380012 204367470157_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 dc7fb381-455e-415a-9f7d-714cbf4721d7 8879cf6f4842b482fb33ec5a60e881b6 {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_503b08df.WGS.T C3N-00390 CCRCC WGS tumor CPT0017380012 CPT0017380012.WholeGenome.RP-2158.bam 27255630282 BAM submitted_aligned CPTAC3 9e922bd0-a75a-4da6-b09c-b2c42e8ec1a9 82dc66c8717a9de75a1c598a3098163c {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_503b08df.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017380012 db1a7dad-b66d-4d4f-811c-4692fdf6fbcd_wgs_gdc_realn.bam 83431820848 BAM harmonized CPTAC3 475ab387-5aa1-4fde-b24b-c1e1ba45a4d1 d7347d9d2998d9614eba2cbda512266a {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_503b08df.WXS.T C3N-00390 CCRCC WXS tumor CPT0017380012 CPT0017380012.WholeExome.RP-1303.bam 24192277110 BAM submitted_aligned CPTAC3 41da4198-c1f7-4caf-a591-8116b66b20de 7c60f31ea4e19ac93aa6e94422799a58 {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_503b08df.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017380012 db1a7dad-b66d-4d4f-811c-4692fdf6fbcd_wxs_gdc_realn.bam 34097857472 BAM harmonized CPTAC3 e439199e-a0ce-4656-9a37-7f2997f06747 8f25de54c03b02e5b3fe3c86bf1bef0f {"aliquot_tag": "DUP_503b08df", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_6073daf.miRNA-Seq.S32_L005_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017440009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGAAA_S32_L005_R1_001.unaln.bam 466208123 BAM S32_L005_R1 submitted_unaligned CPTAC3 fc1548a0-41df-455b-be9c-53e1afa7d63f b5d17d0238e79a223ec1eeb64e2922de {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_6073daf.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017440009 9de1c65c-40cc-46fa-a66a-4cb8b7e34304_mirnaseq_gdc_realn.bam 519476566 BAM harmonized CPTAC3 9f691639-b9f8-4a78-b1dd-de2750e19d19 8ff2ea12b4ac9c0a9a4b9ea7ad5c35da {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_6073daf.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.chimeric.gdc_realn.bam 213978818 BAM chimeric harmonized CPTAC3 adc72ea4-a200-4942-95d4-ada98d5b716b dff0047aa9997aabd89f407a6529f762 {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_6073daf.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.genomic.gdc_realn.bam 7958427887 BAM genomic harmonized CPTAC3 e6e25830-1df1-4634-bbd6-e5d7af6ba4c3 b7aa29815118ee676e9086fe23c6cc2a {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_6073daf.RNA-Seq.S43_L008_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R1_001.fastq.gz 3657936333 FASTQ S43_L008_R1 submitted_unaligned CPTAC3 6cfbe052-98a8-44be-b136-fd587b9881f2 4db0afc7b33ec018165240f301ecf514 {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_6073daf.RNA-Seq.S43_L008_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R2_001.fastq.gz 4275608311 FASTQ S43_L008_R2 submitted_unaligned CPTAC3 9184058d-e03e-46e2-88f1-3d5d51929248 b9ff2d1cb39476cbaa21736a1c6c11b0 {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S43", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_6073daf.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.transcriptome.gdc_realn.bam 8886131136 BAM transcriptome harmonized CPTAC3 b2618521-711e-451d-a539-b1dc0c66c0e5 508e9a1c0b220a0d1f5f09f21f14629b {"aliquot_tag": "DUP_6073daf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_78e20c6.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017420012 204367470124_R08C01_Grn.idat 13677881 IDAT Green NA CPTAC3 cdab96de-1419-45e0-a8bb-d67bb58d66f5 baf124445156b90307678891758be2f4 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_78e20c6.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017420012 204367470124_R08C01_Red.idat 13677881 IDAT Red NA CPTAC3 7449bb66-f628-430b-8b0a-d3e076f18bb6 07210fa39de89c53d14cce56df5f69fa {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_78e20c6.WGS.T C3N-00390 CCRCC WGS tumor CPT0017420012 CPT0017420012.WholeGenome.RP-2158.bam 27609108145 BAM submitted_aligned CPTAC3 42c72b8e-61cf-492f-a27a-2bc89e73456e 7cf8174f9668607b5fb36fe72a542683 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_78e20c6.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017420012 203e9212-0fc2-45f8-8238-7ba61452caae_wgs_gdc_realn.bam 77810035168 BAM harmonized CPTAC3 4f8c9f90-5228-4bd0-a021-64c7f2521db3 f9032c56c1c1d4dccd3fc9895bd0a359 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_78e20c6.WXS.T C3N-00390 CCRCC WXS tumor CPT0017420012 CPT0017420012.WholeExome.RP-1303.bam 24249113360 BAM submitted_aligned CPTAC3 d6755e36-61c8-4fbc-999b-1135810dd2aa 88f3825c79b5987589a1d61626208757 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_78e20c6.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017420012 203e9212-0fc2-45f8-8238-7ba61452caae_wxs_gdc_realn.bam 34490604783 BAM harmonized CPTAC3 79d0202e-f476-4bfc-aedd-309aa0316ccd 7ef4c39d14eba022f5409e557cda0499 {"aliquot_tag": "DUP_78e20c6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_88ced566.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017440012 204372030164_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e4dedb6c-e049-4597-ae05-4a11f8fc3929 a67cb048482693e05f45665823c71d3f {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_88ced566.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017440012 204372030164_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 aadc0509-821b-4158-98d8-d6cfb2c4943e 631ce78fa6d7c1dfb32601c860a13edf {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_88ced566.WGS.T C3N-00390 CCRCC WGS tumor CPT0017440012 CPT0017440012.WholeGenome.RP-2158.bam 29702744447 BAM submitted_aligned CPTAC3 8a988595-b43a-4866-86f8-544251cc7247 289092fe9632b4abda883f99a0b5e29c {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_88ced566.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017440012 443fd947-4a68-44ca-9afd-ea88f0c6016e_wgs_gdc_realn.bam 86536604735 BAM harmonized CPTAC3 3bb582b5-ca3a-472c-bedc-ad2685f6b18b 39bdc3c59f20782adb65fb6e14406c8c {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_88ced566.WXS.T C3N-00390 CCRCC WXS tumor CPT0017440012 CPT0017440012.WholeExome.RP-1303.bam 19757924839 BAM submitted_aligned CPTAC3 b4b15c62-49ce-484f-98fe-c88cdda5a307 75b493393227757de6b780669dbfb0e3 {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_88ced566.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017440012 443fd947-4a68-44ca-9afd-ea88f0c6016e_wxs_gdc_realn.bam 27670117403 BAM harmonized CPTAC3 2a2a2f8c-3f64-4b8f-a67d-527cb3819fb5 cb050bce477397be4c4285999351ae5a {"aliquot_tag": "DUP_88ced566", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_8947c80f.miRNA-Seq.S14_L005_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017420009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L005_R1_001.unaln.bam 285682717 BAM S14_L005_R1 submitted_unaligned CPTAC3 86ab0106-c981-433d-a2bd-dc862b97c29d a5f797b74b479a4e986cd1cbce090e5f {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_8947c80f.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017420009 541cdfa9-af97-44fc-b90b-13cc387ec13e_mirnaseq_gdc_realn.bam 320559853 BAM harmonized CPTAC3 4f72ef3d-1c68-438a-b9b0-8931eceab907 238bd05041529efd4529dca167409584 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_8947c80f.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.chimeric.gdc_realn.bam 148676584 BAM chimeric harmonized CPTAC3 eeca3fc5-13cd-415b-b9c7-800d5eefd925 61b1f627111ae9c1e46e56361ddde259 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_8947c80f.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.genomic.gdc_realn.bam 9172421582 BAM genomic harmonized CPTAC3 7e231606-0238-4680-9c1b-ed527887dde4 1baf80ed39fe49d68096ed67f4b87b95 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_8947c80f.RNA-Seq.S44_L008_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R1_001.fastq.gz 4020863735 FASTQ S44_L008_R1 submitted_unaligned CPTAC3 905058aa-6424-47a3-b1cf-3f06442145b7 ae7bd894439e0bab3e49e2f610496b52 {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_8947c80f.RNA-Seq.S44_L008_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R2_001.fastq.gz 4987980812 FASTQ S44_L008_R2 submitted_unaligned CPTAC3 eff14575-0fda-4b6f-8048-c27b0ff25568 d21c6686ec83998a33dc422ca58851ec {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S44", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_8947c80f.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.transcriptome.gdc_realn.bam 11986468487 BAM transcriptome harmonized CPTAC3 310ca6aa-33ec-4cd4-ab4a-39a32570e1b3 964f699aeeef7b1d1b5a057acfea3c1d {"aliquot_tag": "DUP_8947c80f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_def2e016.miRNA-Seq.S31_L005_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017380009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L005_R1_001.unaln.bam 238255594 BAM S31_L005_R1 submitted_unaligned CPTAC3 35b33871-db9a-4d29-a63b-cc55792e404a 64a02ef7c0e601d3d4d4d32f825bfd35 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_def2e016.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017380009 51fff035-90ad-4eb3-8e7e-1ae9aa243110_mirnaseq_gdc_realn.bam 264378862 BAM harmonized CPTAC3 79d2168e-077e-471f-934d-efbed6b9b817 ac0f6e220d0af5027de4b02fa68b397d {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_def2e016.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.chimeric.gdc_realn.bam 298650148 BAM chimeric harmonized CPTAC3 9117e226-8548-405a-830a-ffd00f664d86 38fd23fdcaf1fe8603e8e9e5669d1a68 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_def2e016.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.genomic.gdc_realn.bam 8938890409 BAM genomic harmonized CPTAC3 8dbd9844-56e6-4a64-b8ea-cc29339d8141 29090825d5e4d020f8a85a98b83f3601 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_def2e016.RNA-Seq.S46_L008_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R1_001.fastq.gz 4056712338 FASTQ S46_L008_R1 submitted_unaligned CPTAC3 2002689b-cc74-438b-9bbf-cca9f937445e 72e2a1f9eee1925b879d904d9c8deb27 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_def2e016.RNA-Seq.S46_L008_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R2_001.fastq.gz 4819783727 FASTQ S46_L008_R2 submitted_unaligned CPTAC3 88c52f10-b800-41ff-bfcc-692c23a2be2e 62cacb3ff570e16f100f97078cd68093 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S46", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.DUP_def2e016.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.transcriptome.gdc_realn.bam 10824761023 BAM transcriptome harmonized CPTAC3 a66ee1c7-0363-4963-9cf6-8d1aa48e6e9c 2a344be668663b62e890ed061e18cad8 {"aliquot_tag": "DUP_def2e016", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.MethArray.Green.A C3N-00390 CCRCC Methylation_Array tissue_normal CPT0017450009 204930630081_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7fed97a5-6a31-471b-90ad-598b2507c20d 54904cab7ca4ed82c4a6951dfdcb6565 {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.MethArray.Green.T C3N-00390 CCRCC Methylation_Array tumor CPT0017410009 202184900128_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 10d09e53-f69e-41d2-a629-86db69a7f986 046c4148d38cb63f3191123e895e2bac {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.MethArray.Red.A C3N-00390 CCRCC Methylation_Array tissue_normal CPT0017450009 204930630081_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 96e5a44c-c468-46f2-bb5d-a1a26e096326 129dcb465785bf098ec6e0f9d86de290 {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.MethArray.Red.T C3N-00390 CCRCC Methylation_Array tumor CPT0017410009 202184900128_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 1f8d4f8f-7e54-4a94-bd17-88002f214ea8 7adfedd7f031c5b3e15098104c8bd962 {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.miRNA-Seq.A.hg38 C3N-00390 CCRCC miRNA-Seq tissue_normal CPT0017450006 b55be229-a96e-4f1f-a147-395da0b008b3_mirnaseq_gdc_realn.bam 240155639 BAM harmonized CPTAC3 be035a8a-2869-4788-b85a-749dc98b26d2 b0e8431c212a35e5e376e4cde7283357 {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.miRNA-Seq.S10_L003_R1.A C3N-00390 CCRCC miRNA-Seq tissue_normal CPT0017450006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L003_R1_001.unaln.bam 219079074 BAM S10_L003_R1 submitted_unaligned CPTAC3 366a60c1-8102-477d-ac44-2994e06d3458 8df3c66964f7ccaf5972038b2935e209 {"aliquot_tag": "ALQ_abd8098e", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.miRNA-Seq.S42_L002_R1.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017410006 180924_UNC31-K00269_0154_AHWTMLBBXX_CGATGT_S42_L002_R1_001.unaln.bam 318162379 BAM S42_L002_R1 submitted_unaligned CPTAC3 428f0573-8e30-4ecf-a9b6-7b6a20c6d784 2202773bbb391f8e8717518105522ad9 {"aliquot_tag": "ALQ_5e58af4e", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017410006 859a6c1b-29d8-4189-913f-8e84d91908df_mirnaseq_gdc_realn.bam 352327802 BAM harmonized CPTAC3 4669bb34-a110-4a4e-a2ac-43f59cb8532a 2e7df52566986eab981b5a392a1a9529 {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.RNA-Seq.chimeric.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.chimeric.gdc_realn.bam 56075028 BAM chimeric harmonized CPTAC3 02497492-bea6-4b24-a916-b727c4156ef0 2ed08482684c81f58f96beb0d2dcdb3a {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.chimeric.gdc_realn.bam 100660652 BAM chimeric harmonized CPTAC3 f55db855-edad-4906-bada-a690f6a21659 34149eb9f987caa588012fb70b7160b3 {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.RNA-Seq.genomic.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.genomic.gdc_realn.bam 7631709814 BAM genomic harmonized CPTAC3 ba21c85d-543b-43dc-b117-8ed2b4d8fc34 3e574f00c48cd1d1b19477dca41ea6f2 {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.genomic.gdc_realn.bam 10407796224 BAM genomic harmonized CPTAC3 4b1618e3-7f50-4b00-b4fe-78bf951edebc 6fc2273296458768b3f10a827ebcc57e {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.RNA-Seq.S1_L001_R1.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R1_001.fastq.gz 5501332065 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 cfd17a8e-5a92-4ef4-9071-8c31a235e709 4ad9cde11d31a7da229c683501c9f9fd {"aliquot_tag": "ALQ_5e58af4e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.RNA-Seq.S1_L001_R2.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R2_001.fastq.gz 5718157935 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 aac89418-1bdf-4820-b7ad-47d287e141be 7490558949170ebf04fbe6159514f449 {"aliquot_tag": "ALQ_5e58af4e", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.RNA-Seq.S20_L005_R1.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R1_001.fastq.gz 3719497909 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 e043fb64-5301-4a3b-a854-35c982a50471 e12b712f21e9aee59149a524c3a466db {"aliquot_tag": "ALQ_abd8098e", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.RNA-Seq.S20_L005_R2.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R2_001.fastq.gz 4091132493 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 b450c8e8-7898-4555-b7f5-3b3921d17b22 3d38d27029fca75c93638aef7e85af29 {"aliquot_tag": "ALQ_abd8098e", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.RNA-Seq.transcriptome.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.transcriptome.gdc_realn.bam 8865769343 BAM transcriptome harmonized CPTAC3 d72e9bf2-11d5-45af-b1e0-a5f666efbc17 255d749e5be03362530e95479b8c611b {"aliquot_tag": "ALQ_abd8098e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.transcriptome.gdc_realn.bam 15297630830 BAM transcriptome harmonized CPTAC3 dda39e9d-666c-4ec0-8538-9b2c3b7497ed b59d78d08c86f69e963eeff850bfe139 {"aliquot_tag": "ALQ_5e58af4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.WGS.A C3N-00390 CCRCC WGS tissue_normal CPT0017450009 CPT0017450009.WholeGenome.RP-1303.bam 62889901487 BAM submitted_aligned CPTAC3 c667594d-f7cc-46c0-b9bf-0458ef18ffc4 18aeade146834513125a461fdd9337ad {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.WGS.A.hg38 C3N-00390 CCRCC WGS tissue_normal CPT0017450009 450fa79b-024b-41aa-a4ef-1a34855a5487_wgs_gdc_realn.bam 92562214021 BAM harmonized CPTAC3 506a9a20-816c-416f-9b03-d3d872b42907 1d7e039d3570f7a90f8c26fb282b581c {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.WGS.N C3N-00390 CCRCC WGS blood_normal CPT0017650002 CPT0017650002.WholeGenome.RP-1303.bam 90269581620 BAM submitted_aligned CPTAC3 ca2bc7ba-83dc-4d4b-835d-7fe4da983e82 b8665ff60110e061fbcf93e39f40717d {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00390.WGS.N.hg38 C3N-00390 CCRCC WGS blood_normal CPT0017650002 faa668ee-186c-4f91-9d95-174aa0475acc_gdc_realn.bam 132201818668 BAM harmonized CPTAC3 7b1c9847-b2f9-417b-baf7-2fa69338625d 464d9480df02af15857a8989bafd4616 {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00390.WGS.T C3N-00390 CCRCC WGS tumor CPT0017410009 CPT0017410009.WholeGenome.RP-1303.bam 60659777240 BAM submitted_aligned CPTAC3 5a0a231c-8a41-46fb-839b-d2d6cef5fcb3 7a4d25bf440b710893cc3146179ecc9e {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.WGS.T.hg38 C3N-00390 CCRCC WGS tumor CPT0017410009 123b51a7-1551-4ff7-99d0-6feb628c4355_gdc_realn.bam 87294339723 BAM harmonized CPTAC3 ce6bee58-46ee-4acf-9ab2-ec0b4d4b99f8 31ca2442921b3ed0ba0bb7abd07f1976 {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.WXS.A C3N-00390 CCRCC WXS tissue_normal CPT0017450009 CPT0017450009.WholeExome.RP-1303.bam 45929431551 BAM submitted_aligned CPTAC3 38c9f3fd-34d6-4998-a84d-aa5d1cef6ffb 67b3b271732ec0451ecf69a0f10753e9 {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.WXS.A.hg38 C3N-00390 CCRCC WXS tissue_normal CPT0017450009 450fa79b-024b-41aa-a4ef-1a34855a5487_wxs_gdc_realn.bam 61626170655 BAM harmonized CPTAC3 00ab82e5-c699-4434-9920-740f58ac3cf6 0e531112c1a5e798e192efaaac8cc50c {"aliquot_tag": "ALQ_3b67141f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00390.WXS.N C3N-00390 CCRCC WXS blood_normal CPT0017650002 CPT0017650002.WholeExome.RP-1303.bam 28542007894 BAM submitted_aligned CPTAC3 ca635872-6db3-4d17-9699-daf3fa6557b8 9fd71c47d1344a551bc5ab6c29fd9d13 {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00390.WXS.N.hg38 C3N-00390 CCRCC WXS blood_normal CPT0017650002 faa668ee-186c-4f91-9d95-174aa0475acc_gdc_realn.bam 38648200944 BAM harmonized CPTAC3 8e18e440-e6bb-4977-89d5-a9dbc941a364 b6c9b9366f24171a1a146ab96b053a74 {"aliquot_tag": "ALQ_e17d6c9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00390.WXS.T C3N-00390 CCRCC WXS tumor CPT0017410009 CPT0017410009.WholeExome.RP-1303.bam 24833283583 BAM submitted_aligned CPTAC3 91ee293c-9fef-430d-ba72-6887518c1d8d 23ccff72cf782094c15043bc53d7456a {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00390.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017410009 123b51a7-1551-4ff7-99d0-6feb628c4355_gdc_realn.bam 33875116875 BAM harmonized CPTAC3 8fb76fd8-4ac2-445a-bf61-627855d3a69c c62623a4244e100151e27920575275fa {"aliquot_tag": "ALQ_cee7b2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.MethArray.Green.T C3N-00433 LUAD Methylation_Array tumor CPT0021450009 202163550076_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 63357ead-633d-4c8f-adec-934492db5b8d 01178c1b93f2a285403050c1d90cf049 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.MethArray.Red.T C3N-00433 LUAD Methylation_Array tumor CPT0021450009 202163550076_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 73548d4c-54e9-4208-ae5d-ea4b9d48f2f3 978fd4614e0de1f97896de842023ecc5 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.miRNA-Seq.A.hg38 C3N-00433 LUAD miRNA-Seq tissue_normal CPT0021490006 14291a09-441c-4339-9236-51048cf08527_mirnaseq_gdc_realn.bam 331394218 BAM harmonized CPTAC3 bc37a3c0-b4e7-48fe-bc19-44e31feab1e6 91dcea4b134f921434d8430d73aa81be {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.miRNA-Seq.S22_L003_R1.T C3N-00433 LUAD miRNA-Seq tumor CPT0021450006 180924_UNC31-K00269_0154_AHWTMLBBXX_TGACCA_S22_L003_R1_001.unaln.bam 236719284 BAM S22_L003_R1 submitted_unaligned CPTAC3 ad9405c3-d183-4396-8b4e-5334f52f44c6 650245d875d84c01c9537a98d68f8775 {"aliquot_tag": "ALQ_46873b57", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.miRNA-Seq.S34_L008_R1.A C3N-00433 LUAD miRNA-Seq tissue_normal CPT0021490006 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L008_R1_001.unaln.bam 302311879 BAM S34_L008_R1 submitted_unaligned CPTAC3 828bf798-47a5-4176-b0fb-8c71365c9724 8ad6dcd2d5f97311540083bb7064f19e {"aliquot_tag": "ALQ_8377d656", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.miRNA-Seq.T.hg38 C3N-00433 LUAD miRNA-Seq tumor CPT0021450006 42707b89-4509-45e2-b26f-52e704e2fbe5_mirnaseq_gdc_realn.bam 256536246 BAM harmonized CPTAC3 e25f220e-5e07-4051-8149-8147a914a855 162be80b328f6d81257e43a3e01c684e {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.RNA-Seq.chimeric.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.chimeric.gdc_realn.bam 69755344 BAM chimeric harmonized CPTAC3 1b26129a-803c-49db-9990-448135fc0442 3c8bb6ad96327bea577a84af64e4aca9 {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.RNA-Seq.chimeric.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.chimeric.gdc_realn.bam 120519758 BAM chimeric harmonized CPTAC3 22a8729c-482d-4509-9596-bd2e8c127623 f74441761b106892f9b309f932374407 {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.RNA-Seq.genomic.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.genomic.gdc_realn.bam 8815171588 BAM genomic harmonized CPTAC3 d6c613aa-0d42-4030-960f-80bb71d3f739 b6192d31b67c60c2c0451aa1f1a68190 {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.RNA-Seq.genomic.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.genomic.gdc_realn.bam 9029090679 BAM genomic harmonized CPTAC3 24e72fb5-004f-4097-9dfa-d2bbefd49836 a7c5eb70c1f80cba7f23b34e0b4481f4 {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.RNA-Seq.S1_L001_R1.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R1_001.fastq.gz 4079686548 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 c443cb0f-2b18-4dc6-afa3-4fbcd21d8796 922f30ef64f933479069f0aa6c367f20 {"aliquot_tag": "ALQ_8377d656", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.RNA-Seq.S1_L001_R2.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R2_001.fastq.gz 4482697049 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 a49dce08-4fbf-4947-94f0-a5de741eb002 90b601b08ee502876a79dfded2432288 {"aliquot_tag": "ALQ_8377d656", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.RNA-Seq.S8_L008_R1.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4231591241 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 f75a7f21-ffb6-4781-a55f-11a56b32dc42 6a2fba174985f53b93d9f3124cf6994a {"aliquot_tag": "ALQ_46873b57", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.RNA-Seq.S8_L008_R2.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4461495977 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 23c754d1-06c3-406f-9fb5-ad1c3a807dc4 77451a64b6b6952464260329841732dd {"aliquot_tag": "ALQ_46873b57", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.RNA-Seq.transcriptome.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.transcriptome.gdc_realn.bam 10343631294 BAM transcriptome harmonized CPTAC3 4adc147f-6939-4b06-9bce-9c1f69f0f203 ab74012bfec72d1b563f16f3225f8847 {"aliquot_tag": "ALQ_8377d656", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.RNA-Seq.transcriptome.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.transcriptome.gdc_realn.bam 9506977441 BAM transcriptome harmonized CPTAC3 573e8655-5aab-4510-8fc1-cc00e6da9069 14984db4e67acdcf00c43fb43b884ccd {"aliquot_tag": "ALQ_46873b57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.WGS.A C3N-00433 LUAD WGS tissue_normal CPT0021490008 CPT0021490008.WholeGenome.RP-1303.bam 37569068335 BAM submitted_aligned CPTAC3 422b242a-7059-44ed-ab5d-134196f0969e 2a24c344b525542cd285c3322f52b358 {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.WGS.A.hg38 C3N-00433 LUAD WGS tissue_normal CPT0021490008 839fab3b-2caa-4b89-a38e-506d1ac791da_wgs_gdc_realn.bam 54595861744 BAM harmonized CPTAC3 0a6b9acc-a553-4ec5-8442-88d64b78d378 934d2f1d4aa88c486db1aec7bac7e13c {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.WGS.N C3N-00433 LUAD WGS blood_normal CPT0021500002 CPT0021500002.WholeGenome.RP-1303.bam 70751043349 BAM submitted_aligned CPTAC3 1f3b62e0-071f-4dab-91c5-e1d27d30c28a e9ce15e510586cf4b1964117be3e0cf5 {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00433.WGS.N.hg38 C3N-00433 LUAD WGS blood_normal CPT0021500002 d2550193-d082-44fe-a0ec-9ce59f8a06cb_gdc_realn.bam 105176943180 BAM harmonized CPTAC3 072a38fa-c895-45c7-ac58-2135d0c9d426 80bda348e1e09e514363b333f9d679ce {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00433.WGS.T C3N-00433 LUAD WGS tumor CPT0021450009 CPT0021450009.WholeGenome.RP-1303.bam 65742823939 BAM submitted_aligned CPTAC3 47b16c04-1565-4f1d-9a32-10bf05f70bf6 38d821cf6f6396e7fba660a174603078 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.WGS.T.hg38 C3N-00433 LUAD WGS tumor CPT0021450009 2b589dfa-a7ce-4957-ad42-ca2e3d3d9d69_gdc_realn.bam 97391647605 BAM harmonized CPTAC3 c4912afc-de59-4456-b5bc-9d219de452a6 3cb91c4d23a56cf06a0a17585026d329 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.WXS.A C3N-00433 LUAD WXS tissue_normal CPT0021490008 CPT0021490008.WholeExome.RP-1303.bam 36249237797 BAM submitted_aligned CPTAC3 46a3851a-f235-4f2e-9af1-4ef6e7907f02 e890eb42ac29181f35ff02c43126aac2 {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.WXS.A.hg38 C3N-00433 LUAD WXS tissue_normal CPT0021490008 839fab3b-2caa-4b89-a38e-506d1ac791da_wxs_gdc_realn.bam 48610517822 BAM harmonized CPTAC3 b35bffde-a71d-4aa9-a10d-92b8eeced9c5 180d71d03de0f0c658cf3497e5e031be {"aliquot_tag": "ALQ_64cffb51", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00433.WXS.N C3N-00433 LUAD WXS blood_normal CPT0021500002 CPT0021500002.WholeExome.RP-1303.bam 26250270695 BAM submitted_aligned CPTAC3 a3e312b1-1486-472d-9f2d-b1dcdf0fb911 4ae2d77269317e7424a2f3e6ab89593f {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00433.WXS.N.hg38 C3N-00433 LUAD WXS blood_normal CPT0021500002 d2550193-d082-44fe-a0ec-9ce59f8a06cb_gdc_realn.bam 35614744578 BAM harmonized CPTAC3 13281c32-408b-4ec9-8c38-9f251e0efa4c 53a874533afb6fa95e31c3cdfa784366 {"aliquot_tag": "ALQ_4256a39b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00433.WXS.T C3N-00433 LUAD WXS tumor CPT0021450009 CPT0021450009.WholeExome.RP-1303.bam 41291662505 BAM submitted_aligned CPTAC3 476db2f2-c495-4590-9f2c-0d1893dcf891 3d95e4e67296c1e0d0eabad07c2a27d4 {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00433.WXS.T.hg38 C3N-00433 LUAD WXS tumor CPT0021450009 2b589dfa-a7ce-4957-ad42-ca2e3d3d9d69_gdc_realn.bam 56371621618 BAM harmonized CPTAC3 871aa1bb-9e81-4bc8-b766-233e958149ba 6bd4e7079fda747d030530ed1765f83c {"aliquot_tag": "ALQ_d63826c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.MethArray.Green.A C3N-00435 CCRCC Methylation_Array tissue_normal CPT0018250009 204930640051_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2b922a59-f1f2-487a-bf86-385f274991cf 5f9a39b1a164ad67a87e09e124b0f338 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.MethArray.Green.T C3N-00435 CCRCC Methylation_Array tumor CPT0017850009 202176300039_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 895d58a0-02f5-4a76-902b-5a1fa3f20929 0d0c769bd0756b2fabaf9c215cae89c2 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.MethArray.Red.A C3N-00435 CCRCC Methylation_Array tissue_normal CPT0018250009 204930640051_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 2545d5f3-8f8d-4580-a87e-2d689621b006 5057272b9c9eeba8c59b819c0a952b89 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.MethArray.Red.T C3N-00435 CCRCC Methylation_Array tumor CPT0017850009 202176300039_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 54ab9e6f-0e69-41cd-bbeb-26509f746708 40cf3ddd0a67eddfa29ae18c3b831a19 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.miRNA-Seq.A.hg38 C3N-00435 CCRCC miRNA-Seq tissue_normal CPT0018250006 8dabc132-6bbf-4e3a-abaa-40889ff0abdb_mirnaseq_gdc_realn.bam 180258471 BAM harmonized CPTAC3 e3c20276-e766-414b-9461-dc361729154f 50726cb15a2f6203a421d77742fe0c5f {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.miRNA-Seq.S11_L003_R1.A C3N-00435 CCRCC miRNA-Seq tissue_normal CPT0018250006 181108_UNC31-K00269_0163_BH23TVBBXY_GGCTAC_S11_L003_R1_001.unaln.bam 163566483 BAM S11_L003_R1 submitted_unaligned CPTAC3 37ba18bb-eb4a-4cc3-a51d-eb52ae851968 a9ebbb15d5b23d0c7c2bed2fab3b91be {"aliquot_tag": "ALQ_8bc99a7a", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.miRNA-Seq.S2_L002_R1.T C3N-00435 CCRCC miRNA-Seq tumor CPT0017850006 180924_UNC31-K00269_0154_AHWTMLBBXX_TTAGGC_S2_L002_R1_001.unaln.bam 216405558 BAM S2_L002_R1 submitted_unaligned CPTAC3 23f8a827-8654-4259-877d-086e5e9d7d15 5f2e2c7a2fb00b49eaac420eb64b7a12 {"aliquot_tag": "ALQ_dc1ac9f5", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.miRNA-Seq.T.hg38 C3N-00435 CCRCC miRNA-Seq tumor CPT0017850006 9bc4abf6-ef04-4d2f-ae84-af0a2dc440b4_mirnaseq_gdc_realn.bam 237293086 BAM harmonized CPTAC3 4d3cd35c-87e0-4c91-8746-329a0ffbe5b2 2222ae22606162ac604b8f7e73d3f2f6 {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.RNA-Seq.chimeric.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.chimeric.gdc_realn.bam 55328761 BAM chimeric harmonized CPTAC3 bcc1dc01-60b8-499a-b2a6-963101e0a869 6195e7bdf7acdcbbcbc4247485418e73 {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.RNA-Seq.chimeric.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.chimeric.gdc_realn.bam 89125504 BAM chimeric harmonized CPTAC3 445cc183-ed85-40e2-b32b-f9701a0a8ab5 860fa349a2243aa4864c859630948d9a {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.RNA-Seq.genomic.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.genomic.gdc_realn.bam 9061840231 BAM genomic harmonized CPTAC3 a72e6609-6815-48c5-a388-4f1c0580b09c 43b5076dac9d8b72fdafcf329504b6f7 {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.RNA-Seq.genomic.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.genomic.gdc_realn.bam 13705381160 BAM genomic harmonized CPTAC3 ff0652cc-3fe0-4bb3-b999-8b3dd8f860ba 29c4ba56fdbfa6441dac0d6b110be1bb {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.RNA-Seq.S15_L004_R1.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R1_001.fastq.gz 3947849920 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 b8cc1b1d-0fca-45a7-badd-da4b3b0ea844 d1a091b13ef439b1833150f1cbf77fd3 {"aliquot_tag": "ALQ_8bc99a7a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.RNA-Seq.S15_L004_R2.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R2_001.fastq.gz 4365134017 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 cf060020-f277-4eab-8e73-df7259e810eb 2a743b25f97929403739d5c93106e09e {"aliquot_tag": "ALQ_8bc99a7a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.RNA-Seq.S17_L005_R1.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 7003239286 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 15172d81-3595-4a42-bf38-ba8b6eee0e8b 167c537035db6f318fc23558360916c8 {"aliquot_tag": "ALQ_dc1ac9f5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.RNA-Seq.S17_L005_R2.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 7286704957 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 483487b6-8ad1-4d26-906d-72991fdb0324 666514b1e78041e750f30a1c1bf8a7df {"aliquot_tag": "ALQ_dc1ac9f5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.RNA-Seq.transcriptome.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.transcriptome.gdc_realn.bam 9071766845 BAM transcriptome harmonized CPTAC3 2e257014-68d3-4246-910d-eeeaec85e62d 6e83a967fa01b8e0c343ec1d89716521 {"aliquot_tag": "ALQ_8bc99a7a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.RNA-Seq.transcriptome.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.transcriptome.gdc_realn.bam 19219107554 BAM transcriptome harmonized CPTAC3 9f426c9b-0b79-455f-93e5-33578b95587b 0832c78cc1926df604b633263ddc373e {"aliquot_tag": "ALQ_dc1ac9f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.WGS.A C3N-00435 CCRCC WGS tissue_normal CPT0018250009 CPT0018250009.WholeGenome.RP-1303.bam 61739430767 BAM submitted_aligned CPTAC3 2ce30c2c-110a-4431-bc4b-44b9dbf03ea0 b2fffd5f6de10ac40ae3ab9ed073ebf4 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.WGS.A.hg38 C3N-00435 CCRCC WGS tissue_normal CPT0018250009 4166743e-13e1-4732-b790-8e16d69c963d_wgs_gdc_realn.bam 90550331166 BAM harmonized CPTAC3 76c7c9a9-25f9-48b1-b02b-d159aa87c7db 872026079f48513660218248583994f3 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.WGS.N C3N-00435 CCRCC WGS blood_normal CPT0022960002 CPT0022960002.WholeGenome.RP-1303.bam 59165863469 BAM submitted_aligned CPTAC3 96d41313-7eee-463a-8e65-9fb4e36fef60 2d74146128162f038475a9f683aa438e {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00435.WGS.N.hg38 C3N-00435 CCRCC WGS blood_normal CPT0022960002 ea11ac1e-a0e5-4531-9282-4337bcc23cee_gdc_realn.bam 85843120165 BAM harmonized CPTAC3 2db4dcfe-4dce-4af9-a962-c33b1a1542f6 a92a77693b04b549c78db6a3d95d7a1a {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00435.WGS.T C3N-00435 CCRCC WGS tumor CPT0017850009 CPT0017850009.WholeGenome.RP-1303.bam 56006211508 BAM submitted_aligned CPTAC3 03c7ac8b-1ea8-4655-83e3-3989e987917d 9bcac909f832cab338f14e2dc7554ec6 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.WGS.T.hg38 C3N-00435 CCRCC WGS tumor CPT0017850009 dd4c27b0-c863-49c4-a6f4-3619af3588ea_gdc_realn.bam 81429017571 BAM harmonized CPTAC3 81278f9d-3eaa-4194-a37d-e528d88261a0 15bf0dfe877b0902cb8f6fcd30517bac {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.WXS.A C3N-00435 CCRCC WXS tissue_normal CPT0018250009 CPT0018250009.WholeExome.RP-1303.bam 33183525944 BAM submitted_aligned CPTAC3 c3552d9e-6398-4fca-a8e1-e87b41988a70 123ad5d532ce707024a17e5d1d13ae9b {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.WXS.A.hg38 C3N-00435 CCRCC WXS tissue_normal CPT0018250009 4166743e-13e1-4732-b790-8e16d69c963d_wxs_gdc_realn.bam 44527283522 BAM harmonized CPTAC3 9f4e4048-f89e-456b-abad-a23c2f39ca5d 020ada93e0f43ff7108df2ddb5468eb6 {"aliquot_tag": "ALQ_1b7687eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00435.WXS.N C3N-00435 CCRCC WXS blood_normal CPT0022960002 CPT0022960002.WholeExome.RP-1303.bam 27139655744 BAM submitted_aligned CPTAC3 cb2bcf64-1df6-43e9-b08e-be305448db8e 0e3559c926f69ba8a5e20adaca05bf48 {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00435.WXS.N.hg38 C3N-00435 CCRCC WXS blood_normal CPT0022960002 ea11ac1e-a0e5-4531-9282-4337bcc23cee_gdc_realn.bam 37245564268 BAM harmonized CPTAC3 bcd9b949-9ace-4dc5-9e19-b1d42bd094c3 9fd07207a964aa14173369116ca0d7d7 {"aliquot_tag": "ALQ_8b3c8cdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00435.WXS.T C3N-00435 CCRCC WXS tumor CPT0017850009 CPT0017850009.WholeExome.RP-1303.bam 32607472654 BAM submitted_aligned CPTAC3 bc321aa7-b1dc-446d-8b25-9a6c6c0fee00 ed8750468fe9821111b3ccc57b532006 {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00435.WXS.T.hg38 C3N-00435 CCRCC WXS tumor CPT0017850009 dd4c27b0-c863-49c4-a6f4-3619af3588ea_gdc_realn.bam 45630077557 BAM harmonized CPTAC3 65bd2c99-25cf-466d-8516-258224a9fee0 4195d2b2c54c401b8b88206198c55b0d {"aliquot_tag": "ALQ_4ca5d464", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.MethArray.Green.A C3N-00436 PDA Methylation_Array tissue_normal CPT0077880006 203561450114_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c15d351c-f204-472d-99f8-4e95978f8062 9f7f8f7388c6772dab65c867c1717d52 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.MethArray.Green.T C3N-00436 PDA Methylation_Array tumor CPT0077860006 202163530118_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 05ebfea7-6837-47dd-b1ca-173aca45ecdf b2d350e818e812bc0387e9b3bea8ebee {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.MethArray.Red.A C3N-00436 PDA Methylation_Array tissue_normal CPT0077880006 203561450114_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 8cd4f6c2-577c-452b-b482-7ee0b6bec611 cec7983685f987b1135e2782ec743940 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.MethArray.Red.T C3N-00436 PDA Methylation_Array tumor CPT0077860006 202163530118_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 da5847ac-22f3-4d78-9622-f8495aef74be 6054fd8eafaee875a1948faf15720c7c {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.miRNA-Seq.A.hg38 C3N-00436 PDA miRNA-Seq tissue_normal CPT0077880009 bd34ac2d-c96a-4e80-9ace-a25e8f90698e_mirnaseq_gdc_realn.bam 228374870 BAM harmonized CPTAC3 0a998255-c134-46c5-abdc-e71f70bf6ac4 b146e6024fb047672baf7f08edd668b3 {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.miRNA-Seq.S27_L002_R1.A C3N-00436 PDA miRNA-Seq tissue_normal CPT0077880009 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 205378312 BAM S27_L002_R1 submitted_unaligned CPTAC3 5d8346de-8f03-4f84-9bf3-b6b8f33f8f2a a4dda9e1db56f2fbf10587254ba1c38f {"aliquot_tag": "ALQ_725a1952", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.miRNA-Seq.S47_L007_R1.T C3N-00436 PDA miRNA-Seq tumor CPT0077860009 181012_UNC32-K00270_0124_AH223CBBXY_GTGAAA_S47_L007_R1_001.unaln.bam 249432286 BAM S47_L007_R1 submitted_unaligned CPTAC3 0d3a1cb7-f07e-49ad-84ee-2322dbbb9093 f29d1337cc4b74b8af997eb529705cc7 {"aliquot_tag": "ALQ_cd6aa733", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.miRNA-Seq.T.hg38 C3N-00436 PDA miRNA-Seq tumor CPT0077860009 de92920b-8193-431a-b759-5f90ae010084_mirnaseq_gdc_realn.bam 276042541 BAM harmonized CPTAC3 97194916-1b82-4264-b617-be4dc306ec6b 8bf197a3f02cbcfc9186cf68a94b8661 {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.RNA-Seq.chimeric.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.chimeric.gdc_realn.bam 28292611 BAM chimeric harmonized CPTAC3 18ac9dbd-3394-4fc3-b0ae-8d6224dbbb93 ce8a7c870244b074e561baae71999b5f {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.RNA-Seq.chimeric.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.chimeric.gdc_realn.bam 50089637 BAM chimeric harmonized CPTAC3 9cfc9a40-ede8-452a-9028-f20b82d04bf4 3743239ef0d41b5db6c29bcc823fea33 {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.RNA-Seq.genomic.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.genomic.gdc_realn.bam 8451230046 BAM genomic harmonized CPTAC3 fc2ab034-a761-40eb-a567-e48c08f6716c 4afb98fa26e6ef77f5133443af6d9c71 {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.RNA-Seq.genomic.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.genomic.gdc_realn.bam 9119909784 BAM genomic harmonized CPTAC3 09b915c1-0407-4268-a0fd-ee74e4c23640 0d03e52ebcb3a83e3a3f042de076ff7a {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.RNA-Seq.S10_L003_R1.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3322009050 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 c61650b4-8e2b-4610-87a2-f37dca36095e becb83fe63bf4b61b4658333156b42bc {"aliquot_tag": "ALQ_725a1952", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.RNA-Seq.S10_L003_R2.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3743308271 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 69dd24b9-3215-4514-a47c-65525a18fb1e ca140feef1d5ce7a43faeb68d40d26f8 {"aliquot_tag": "ALQ_725a1952", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.RNA-Seq.S6_L008_R1.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 4338613527 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 b3772a9b-6281-46fd-bdb2-c3a3e4f58d9c 1c2b70550ea7cebdad08ec3af94f6604 {"aliquot_tag": "ALQ_cd6aa733", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.RNA-Seq.S6_L008_R2.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 4775497389 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 26f6d911-3b74-4d7b-b299-6a40d33b6d5e f3e728590d82e7fff578c6c28771dd1d {"aliquot_tag": "ALQ_cd6aa733", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.RNA-Seq.transcriptome.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.transcriptome.gdc_realn.bam 10449415801 BAM transcriptome harmonized CPTAC3 ff34d7c8-6e22-4e80-a900-edea559cb02a 8de69e723b66739526c2d061a24958ec {"aliquot_tag": "ALQ_725a1952", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.RNA-Seq.transcriptome.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.transcriptome.gdc_realn.bam 12834584094 BAM transcriptome harmonized CPTAC3 e7c72fac-98e3-4afd-92c4-72554426de5f 9b2682f01d7f57dd78f0dbacd5ebabd8 {"aliquot_tag": "ALQ_cd6aa733", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.WGS.A C3N-00436 PDA WGS tissue_normal CPT0077880006 CPT0077880006.WholeGenome.RP-1303.bam 60900793757 BAM submitted_aligned CPTAC3 072c48c4-473c-4a11-8b5d-c2528aced63e 52f39b2b7fd1237fe59d4ec442aa2351 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.WGS.A.hg38 C3N-00436 PDA WGS tissue_normal CPT0077880006 f3556040-be25-4572-92c2-7aa984acd904_wgs_gdc_realn.bam 88079280193 BAM harmonized CPTAC3 7730813b-7def-4440-a692-9070bce32310 f4336435db7b2500203608a1f57173ad {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.WGS.N C3N-00436 PDA WGS blood_normal CPT0077920002 CPT0077920002.WholeGenome.RP-1303.bam 70600735620 BAM submitted_aligned CPTAC3 d239588d-0416-4bc5-802b-28a40e6aa77e d3a3de6c8e8550a6dfc59787faeb28d5 {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00436.WGS.N.hg38 C3N-00436 PDA WGS blood_normal CPT0077920002 6e6a1556-a864-4c8a-8b63-118a87828c67_gdc_realn.bam 109958822204 BAM harmonized CPTAC3 c493bd42-270b-4cec-959b-1f634dcea8a0 2f198edfaa67f4b3ce02d01231199133 {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00436.WGS.T C3N-00436 PDA WGS tumor CPT0077860006 CPT0077860006.WholeGenome.RP-1303.bam 67286043700 BAM submitted_aligned CPTAC3 8208058a-cd86-4eef-8bae-24c53d0c744a 467bd7d14a4bf6883fb050a07d0170bd {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.WGS.T.hg38 C3N-00436 PDA WGS tumor CPT0077860006 aa453f8a-222e-4ede-a0d6-f957897564a2_gdc_realn.bam 100417846565 BAM harmonized CPTAC3 4f3ec54d-5f40-4c05-b239-9ddd5036994b add2c6e02ab7a3933cdf6da842408f72 {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.WXS.A C3N-00436 PDA WXS tissue_normal CPT0077880006 CPT0077880006.WholeExome.RP-1303.bam 29530243479 BAM submitted_aligned CPTAC3 8122f680-c743-4938-8c67-4e4dc6db8d40 1162eda8204116f9729f132d617fa848 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.WXS.A.hg38 C3N-00436 PDA WXS tissue_normal CPT0077880006 f3556040-be25-4572-92c2-7aa984acd904_wxs_gdc_realn.bam 40044030650 BAM harmonized CPTAC3 9576258e-dd99-476c-8933-9717ab8ba126 ab316b5492a8c0a91e0d2ef8ca1f4d25 {"aliquot_tag": "ALQ_e2e504c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00436.WXS.N C3N-00436 PDA WXS blood_normal CPT0077920002 CPT0077920002.WholeExome.RP-1303.bam 36967330812 BAM submitted_aligned CPTAC3 ee18f99b-8400-43b1-9fc2-cf3e1b1f8136 a6d3b56fdb436d4d052439e3137d56de {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00436.WXS.N.hg38 C3N-00436 PDA WXS blood_normal CPT0077920002 6e6a1556-a864-4c8a-8b63-118a87828c67_gdc_realn.bam 51158353494 BAM harmonized CPTAC3 6eae6ce6-d996-4309-b349-73effa28b1b3 01172562376c5f0a04ceeaf0bebb0b3d {"aliquot_tag": "ALQ_64640bde", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00436.WXS.T C3N-00436 PDA WXS tumor CPT0077860006_1 CPT0077860006_1.WholeExome.RP-1303.bam 60154994611 BAM submitted_aligned CPTAC3 b28c0a0c-365c-4ea1-a92e-7a155874cd38 7f35c1a0511f83fb62b72bf3c01de45d {"aliquot_tag": "ALQ_9aa18a72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.WXS.T C3N-00436 PDA WXS tumor CPT0077860006 CPT0077860006.WholeExome.RP-1303.bam 33218772330 BAM submitted_aligned CPTAC3 d2aba700-d085-4f3d-9578-8257b52d23a3 bab5439d5e55cf73beec459185ab8f34 {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.WXS.T.hg38 C3N-00436 PDA WXS tumor CPT0077860006_1 5da59ffb-69f3-4a29-9d0c-aa941f15057d_wxs_gdc_realn.bam 82644942930 BAM harmonized CPTAC3 c3466a86-9bdb-4063-b8bc-4fb78d91ad69 4b522244c89bbaa52403a85ca43ffe8f {"aliquot_tag": "ALQ_9aa18a72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00436.WXS.T.hg38 C3N-00436 PDA WXS tumor CPT0077860006 aa453f8a-222e-4ede-a0d6-f957897564a2_gdc_realn.bam 45758552239 BAM harmonized CPTAC3 3b06c6f2-da38-4070-a976-3846e692faf4 7b145f1815a273f84fb7a3e9c98d3b66 {"aliquot_tag": "ALQ_5dd5baa2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_85641b28.MethArray.Green.T C3N-00437 CCRCC Methylation_Array tumor CPT0012560010 204367490056_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 0de530fe-e661-4e4f-95b1-6016d13be49d 11785bdadc796d5b60bd8f5fca666723 {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_85641b28.MethArray.Red.T C3N-00437 CCRCC Methylation_Array tumor CPT0012560010 204367490056_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 c470c285-526e-423f-8573-80d2c0ffe144 260f9c10528da9c3dc41c7f4a8bfee0d {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_85641b28.WGS.T C3N-00437 CCRCC WGS tumor CPT0012560010 CPT0012560010.WholeGenome.RP-2158.bam 24478256410 BAM submitted_aligned CPTAC3 f16344d3-757e-43c1-8533-bee2cdf6c90f bc9ed37476a665b5b63090ab6fba30f0 {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_85641b28.WGS.T.hg38 C3N-00437 CCRCC WGS tumor CPT0012560010 719142ee-ce33-42b3-8695-c9e338027626_wgs_gdc_realn.bam 71366647483 BAM harmonized CPTAC3 6b0b64ef-6240-4243-b1cf-ac200e932a41 7c39a6a40425a72dce7fb99d8da86b7e {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_85641b28.WXS.T C3N-00437 CCRCC WXS tumor CPT0012560010 CPT0012560010.WholeExome.RP-1303.bam 22521243014 BAM submitted_aligned CPTAC3 da734df4-1707-44ec-b7cb-8798b6bf5816 7c29062349df4db9717e03e4d2a2e84d {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_85641b28.WXS.T.hg38 C3N-00437 CCRCC WXS tumor CPT0012560010 719142ee-ce33-42b3-8695-c9e338027626_wxs_gdc_realn.bam 30293057639 BAM harmonized CPTAC3 dcb3eefb-67e5-4a14-8807-557a2c21292a d63a2faaa3a3f1353dd73e43f078ddd0 {"aliquot_tag": "DUP_85641b28", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_92a4a25b.miRNA-Seq.S20_L006_R1.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012560008 201209_UNC32-K00270_0265_AHJ55WBBXY_TCGAAG_S20_L006_R1_001.unaln.bam 302618730 BAM S20_L006_R1 submitted_unaligned CPTAC3 9386465d-7b9e-42da-b20e-6956658c1b97 bfa513e573e55e4e2bb226ba63a8f02d {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_92a4a25b.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012560008 332fc9ba-1bd9-456f-9069-0429decc4ee2_mirnaseq_gdc_realn.bam 325471898 BAM harmonized CPTAC3 b5ad1126-a875-4f9f-8e49-1793df4d1fd1 fcb34d29278f47e31284d9530caa53d0 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_92a4a25b.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.chimeric.gdc_realn.bam 116368411 BAM chimeric harmonized CPTAC3 9a81fb6a-d2fa-4c46-acd9-0d2be5f19094 4060306583e9db1a23409a121a48a3b7 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_92a4a25b.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.genomic.gdc_realn.bam 7728746934 BAM genomic harmonized CPTAC3 a655e51c-b909-4b5a-8c5c-4e47964a1a15 87dcc71182ad09d6ad5f406c18fb5ab7 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_92a4a25b.RNA-Seq.S31_L004_R1.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R1_001.fastq.gz 3754763821 FASTQ S31_L004_R1 submitted_unaligned CPTAC3 9ece06e8-9b6d-449b-b2a5-28cf31463fa6 0f787999e7f1e27bb23118ed22dbd8f0 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_92a4a25b.RNA-Seq.S31_L004_R2.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R2_001.fastq.gz 4032261994 FASTQ S31_L004_R2 submitted_unaligned CPTAC3 221c7dfb-25d0-4adb-91bb-6e3c82fb6016 f68316bc63dd4b53ae0911c12261f915 {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S31", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_92a4a25b.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.transcriptome.gdc_realn.bam 10757804779 BAM transcriptome harmonized CPTAC3 37e56a37-fd84-4983-a933-5cdd445309b3 919fecddad387673ffde345bb5baeb7d {"aliquot_tag": "DUP_92a4a25b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_9f63c1ad.miRNA-Seq.S14_L002_R1.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012540009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L002_R1_001.unaln.bam 235656830 BAM S14_L002_R1 submitted_unaligned CPTAC3 4e17be1f-f47c-4e35-8205-bd4eb0f1f9f3 b0649da7954e8bfe3d581042f0e9507e {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_9f63c1ad.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012540009 aa4f8bc2-c67f-4631-9080-730d295a6215_mirnaseq_gdc_realn.bam 258404200 BAM harmonized CPTAC3 cf312980-ca77-4f3d-8f71-403c141584f5 66f016da58cee2463aceee49203a567c {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_9f63c1ad.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.chimeric.gdc_realn.bam 41457552 BAM chimeric harmonized CPTAC3 d5c1ab46-475b-4351-813d-3a42b23bf968 502d0fba3810c3f9c55b6756e85eda66 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_9f63c1ad.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.genomic.gdc_realn.bam 8291733349 BAM genomic harmonized CPTAC3 ae4d3899-9a37-4206-9443-766c70e9bb80 f2cf44545f9bdab6105b02ab087ce5c3 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_9f63c1ad.RNA-Seq.S15_L004_R1.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3625423624 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 234117c5-dbee-4918-b6c1-59c141a0f5d9 90d25f10339beff1b837a92442370184 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_9f63c1ad.RNA-Seq.S15_L004_R2.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 4304549373 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 144761fd-fe29-4261-98e1-8df138e611cd 77d5a205156708650b147520a0d54567 {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_9f63c1ad.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.transcriptome.gdc_realn.bam 9846340222 BAM transcriptome harmonized CPTAC3 58155458-a43a-4b34-8f33-12b1c09ee45a e4bacafba45e4d43cdc9f28cfd09f05b {"aliquot_tag": "DUP_9f63c1ad", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_fdcdc3c.MethArray.Green.T C3N-00437 CCRCC Methylation_Array tumor CPT0012540006 204367490029_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0d0c6f62-d319-4b8c-8008-4db5e7bdc13b 6d602bad61b3195eacb758e869b54286 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_fdcdc3c.MethArray.Red.T C3N-00437 CCRCC Methylation_Array tumor CPT0012540006 204367490029_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 ac6af806-1947-4ab8-b2d3-76851222287e af93fedd4826369c9600ed0f2ba5c815 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_fdcdc3c.WGS.T C3N-00437 CCRCC WGS tumor CPT0012540006 CPT0012540006.WholeGenome.RP-2158.bam 23898062220 BAM submitted_aligned CPTAC3 de8ee91d-a054-4181-8333-31103188e82c c36dda2c1269a419beb985ac4f1a2ef2 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_fdcdc3c.WGS.T.hg38 C3N-00437 CCRCC WGS tumor CPT0012540006 6999c088-abb7-4095-86c4-8d4ef39c2454_wgs_gdc_realn.bam 70721589610 BAM harmonized CPTAC3 94580492-d9e0-46e1-bfb7-99b791fdb2ad 84ba07700e27d29d0c12e95eb962692b {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_fdcdc3c.WXS.T C3N-00437 CCRCC WXS tumor CPT0012540006 CPT0012540006.WholeExome.RP-1303.bam 20687437390 BAM submitted_aligned CPTAC3 98f5b847-70ea-42d8-bbd5-be8ab0de8a42 c45665bcff021cb694381d9ef55e7045 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.DUP_fdcdc3c.WXS.T.hg38 C3N-00437 CCRCC WXS tumor CPT0012540006 6999c088-abb7-4095-86c4-8d4ef39c2454_wxs_gdc_realn.bam 28128592894 BAM harmonized CPTAC3 b8720f73-4cf1-4f6f-815c-fc875ab88e5d 56cde2611b1dcd3ca702076e4a9f1303 {"aliquot_tag": "DUP_fdcdc3c", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.MethArray.Green.A C3N-00437 CCRCC Methylation_Array tissue_normal CPT0012570009 204930640122_R06C01_Grn.idat 13677965 IDAT Green NA CPTAC3 687201e2-dd66-4db5-be4e-ff5c13e9bf4e 3a52c5f64f5a545169027d50c77cd950 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00437.MethArray.Green.T C3N-00437 CCRCC Methylation_Array tumor CPT0012550008 202184900110_R01C01_Grn.idat 13676256 IDAT Green NA CPTAC3 f5a97070-fb0b-40a8-a0de-39e8a3c8d34f 6e29b3964bab4b83389f4a3fbd430f4f {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.MethArray.Red.A C3N-00437 CCRCC Methylation_Array tissue_normal CPT0012570009 204930640122_R06C01_Red.idat 13677965 IDAT Red NA CPTAC3 3a734ed6-412c-4c5b-83f9-d2df10cf8941 a32b4ebb831a2a728e1dc3bd9abc4c71 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00437.MethArray.Red.T C3N-00437 CCRCC Methylation_Array tumor CPT0012550008 202184900110_R01C01_Red.idat 13676256 IDAT Red NA CPTAC3 8e99e4f6-80ba-4e80-8fb9-c818b7d68ff4 d1e5f1ad3fd6a01051bcd6404da15b1a {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.miRNA-Seq.S41_L002_R1.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012550006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACCGG_S41_L002_R1_001.unaln.bam 270101613 BAM S41_L002_R1 submitted_unaligned CPTAC3 f4fb1bc7-28df-4e3a-bfe3-f995d38aaf24 fd4d3a93631d5990ded8ae2df0fc1bdf {"aliquot_tag": "ALQ_32bcf58c", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012550006 0cc646da-cd28-4839-a3ee-0403750b9afd_mirnaseq_gdc_realn.bam 296835071 BAM harmonized CPTAC3 effa6589-8519-422b-830b-9a0e1c38cf9a a89c3c0f62b15f107f7844f4a95d0a8a {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.chimeric.gdc_realn.bam 72977355 BAM chimeric harmonized CPTAC3 84a9f958-2476-43b0-8d1b-66d82d0c4045 f08df8dedcafce4ce33bafd7ab7cb0d8 {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.genomic.gdc_realn.bam 9669935407 BAM genomic harmonized CPTAC3 08dc4815-8d24-4c09-8fe8-14ea1416e06d 287345e8670e8dc21de9790d357cc73d {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.RNA-Seq.S13_L005_R1.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R1_001.fastq.gz 4652417529 FASTQ S13_L005_R1 submitted_unaligned CPTAC3 b7908b71-b7fa-45ce-bde6-a99a873c5759 cb03bbc425ea827a0f42b44e6d8e5295 {"aliquot_tag": "ALQ_32bcf58c", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.RNA-Seq.S13_L005_R2.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R2_001.fastq.gz 4976163068 FASTQ S13_L005_R2 submitted_unaligned CPTAC3 21aa8b4d-b7a4-4d24-8edf-b9fc75b24f41 b7d2365225dc0c00e26de0a9ff61d17d {"aliquot_tag": "ALQ_32bcf58c", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.transcriptome.gdc_realn.bam 13224294905 BAM transcriptome harmonized CPTAC3 1707d01f-b5b5-4399-b4af-0e13ec77d9b9 eee537a470c2101f3e5270dc99bdf60d {"aliquot_tag": "ALQ_32bcf58c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.WGS.A C3N-00437 CCRCC WGS tissue_normal CPT0012570009 CPT0012570009.WholeGenome.RP-1303.bam 66638247936 BAM submitted_aligned CPTAC3 c7b2ed32-9221-4de8-90f6-8b2a40a4f627 01d2c15c1cadf3856ac1afb034a0795e {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00437.WGS.A.hg38 C3N-00437 CCRCC WGS tissue_normal CPT0012570009 044f57af-6c7b-4e34-8820-cbba46ebfb0c_wgs_gdc_realn.bam 98395098606 BAM harmonized CPTAC3 e6dfbbc9-226c-4084-ba47-d99816424306 3a1b88b50cf1d80cc29b92c1686a5232 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00437.WGS.N C3N-00437 CCRCC WGS blood_normal CPT0012620002 CPT0012620002.WholeGenome.RP-1303.bam 59814501084 BAM submitted_aligned CPTAC3 dcf3a6a6-34d4-47d6-9f5f-d1be7ad9cf1c 09ceac2d14f1f7e633efbec2e3cace80 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00437.WGS.N.hg38 C3N-00437 CCRCC WGS blood_normal CPT0012620002 8f1d580e-0c91-4789-bdff-2e27ae821366_gdc_realn.bam 85478369692 BAM harmonized CPTAC3 91edb936-132b-4154-8286-e5205742c127 89d67b2080690667a052b8e45dca0910 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00437.WGS.T C3N-00437 CCRCC WGS tumor CPT0012550008 CPT0012550008.WholeGenome.RP-1303.bam 71523383378 BAM submitted_aligned CPTAC3 6ce2508a-4cf9-4780-bdff-93835c7c218b afc60e9e9050f2cd22a034debb1eff08 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.WGS.T.hg38 C3N-00437 CCRCC WGS tumor CPT0012550008 f17d580b-fab7-45ed-90cf-2ad70cf8cd3f_gdc_realn.bam 103857942385 BAM harmonized CPTAC3 af9ecf1b-3a85-4b16-99cf-82b8be4f7f9a 793a170fa36d7b19107912fda4338317 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.WXS.A C3N-00437 CCRCC WXS tissue_normal CPT0012570009 CPT0012570009.WholeExome.RP-1303.bam 30467402258 BAM submitted_aligned CPTAC3 a38e1439-7b21-49d1-9dcf-79f656d16325 4eab0a3a7123b126ad9579ed0c77f671 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00437.WXS.A.hg38 C3N-00437 CCRCC WXS tissue_normal CPT0012570009 044f57af-6c7b-4e34-8820-cbba46ebfb0c_wxs_gdc_realn.bam 41646061538 BAM harmonized CPTAC3 ab787fb6-f198-4e20-9b9f-42779c805bb5 c065b56993c1a91e43fa5e9ac1c6f3a2 {"aliquot_tag": "ALQ_d8c3bb7d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00437.WXS.N C3N-00437 CCRCC WXS blood_normal CPT0012620002 CPT0012620002.WholeExome.RP-1303.bam 24033926439 BAM submitted_aligned CPTAC3 e7e7db1b-6107-4cfb-a503-5603e2973c2f 1c9127489a622c2a748b7c58ed8b2656 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00437.WXS.N.hg38 C3N-00437 CCRCC WXS blood_normal CPT0012620002 8f1d580e-0c91-4789-bdff-2e27ae821366_gdc_realn.bam 32989308648 BAM harmonized CPTAC3 b67db00d-1f85-4283-9a26-b629f2cc3726 d4fde10b2c0bd51e9c7de9b1fbd39b73 {"aliquot_tag": "ALQ_1659f2b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00437.WXS.T C3N-00437 CCRCC WXS tumor CPT0012550008 CPT0012550008.WholeExome.RP-1303.bam 29801346626 BAM submitted_aligned CPTAC3 3d7b8a74-c30c-416c-b03c-db5bb052947a 1ce2b1f331bfc309bcde844dc9841924 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00437.WXS.T.hg38 C3N-00437 CCRCC WXS tumor CPT0012550008 f17d580b-fab7-45ed-90cf-2ad70cf8cd3f_gdc_realn.bam 40762163012 BAM harmonized CPTAC3 96724a7e-9a99-4ad2-b1da-1d2d28200609 d69d52c517a8e647817d2b6dcc9ec156 {"aliquot_tag": "ALQ_d504d88b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00438.MethArray.Green.T C3N-00438 CCRCC Methylation_Array tumor CPT0379430007 205589740003_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9cd65426-b8d7-45de-8438-11d972763e9f a68b5f8b60503cded11f1548a1efd0c9 {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.MethArray.Red.T C3N-00438 CCRCC Methylation_Array tumor CPT0379430007 205589740003_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 a60dae0c-0b24-467f-b9d8-8e3d9490fab3 8c57ccc8408323ccbd6f8af8d1dc9b60 {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.miRNA-Seq.S31_L003_R1.T C3N-00438 CCRCC miRNA-Seq tumor CPT0379430010 210111_UNC32-K00270_0270_AHJ5LKBBXY_GACGAC_S31_L003_R1_001.unaln.bam 296769466 BAM S31_L003_R1 submitted_unaligned CPTAC3 f359066a-ad68-4afc-b8cc-ac933126a5d5 777bdcb38dd6fdf2951973561a5555df {"aliquot_tag": "ALQ_7b3d2645", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.miRNA-Seq.T.hg38 C3N-00438 CCRCC miRNA-Seq tumor CPT0379430010 49e4238d-97a3-4619-84d3-123c6d98454e_mirnaseq_gdc_realn.bam 313420359 BAM harmonized CPTAC3 a6a1db3b-9b04-420c-8c85-1d77c15660ac 9a0575237f21b8d36a4ec60e1c1d70a5 {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.RNA-Seq.chimeric.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.chimeric.gdc_realn.bam 169194204 BAM chimeric harmonized CPTAC3 fa586c68-63cf-4fe2-8aa9-2cbcc93bbaae 47a8d6b8797423d7fecda66765132487 {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.RNA-Seq.genomic.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.genomic.gdc_realn.bam 7776648600 BAM genomic harmonized CPTAC3 f24d86ec-55b2-4e87-80be-01c378787f01 54b6ccd6f46e9e465ed05e25aa740923 {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.RNA-Seq.S15_L005_R1.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R1_001.fastq.gz 3922735352 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 9210d9a2-1799-4811-9bf5-5ebeb3ec344f 9fb19271831252475f03c6b31e5bd6f8 {"aliquot_tag": "ALQ_7b3d2645", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.RNA-Seq.S15_L005_R2.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R2_001.fastq.gz 4212708708 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 75659dbc-4d83-4323-86a9-a732e2e721d7 8f1a8a22bb6d7715efdc52a8068db9fa {"aliquot_tag": "ALQ_7b3d2645", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.RNA-Seq.transcriptome.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.transcriptome.gdc_realn.bam 10779869644 BAM transcriptome harmonized CPTAC3 b6f909b4-210d-4cf5-a5ee-d4e3681d644b 080aebce28cac4198dcac5c085cef6de {"aliquot_tag": "ALQ_7b3d2645", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.WGS.N C3N-00438 CCRCC WGS blood_normal CPT0379460002 CPT0379460002.WholeGenome.RP-2158.bam 25860061714 BAM submitted_aligned CPTAC3 0046a886-4dd0-4b02-94ce-43ed3e7e5ada 87339751b7a6eeeee40554a53ed87a2c {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00438.WGS.N.hg38 C3N-00438 CCRCC WGS blood_normal CPT0379460002 684074a3-34eb-4056-ae6d-1746fd762208_wgs_gdc_realn.bam 78548658835 BAM harmonized CPTAC3 b2c12667-2d5d-4f4d-a78b-ca3261e10110 942d7aa74780d208f0d5e453557c01e3 {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00438.WGS.T C3N-00438 CCRCC WGS tumor CPT0379430007 CPT0379430007.WholeGenome.RP-2158.bam 31052675736 BAM submitted_aligned CPTAC3 cefff43d-3ad9-4eea-a8de-608bc79bb8c7 821e4aa06ebc447c526dd379a0eb3e8f {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.WGS.T.hg38 C3N-00438 CCRCC WGS tumor CPT0379430007 f81b19a8-48b8-46cf-9bec-dfcd9b4b5422_wgs_gdc_realn.bam 92651784988 BAM harmonized CPTAC3 81cf2842-cf87-45bf-9b85-90f2ea3db8a5 4fc28f8476ae62689471291c1b171c8c {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.WXS.N C3N-00438 CCRCC WXS blood_normal CPT0379460002 CPT0379460002.WholeExome.RP-1303.bam 24544242719 BAM submitted_aligned CPTAC3 47c9908e-c5da-432b-99a0-a45b6f26cc10 e07399551eb2710e762ae9782375e1a7 {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00438.WXS.N.hg38 C3N-00438 CCRCC WXS blood_normal CPT0379460002 684074a3-34eb-4056-ae6d-1746fd762208_wxs_gdc_realn.bam 34000357389 BAM harmonized CPTAC3 a69f4df8-531f-4b29-9841-b515bc1bf81e 3d506ee0d71285ead2d7d9ad21009d71 {"aliquot_tag": "ALQ_44c8f958", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-00438.WXS.T C3N-00438 CCRCC WXS tumor CPT0379430007 CPT0379430007.WholeExome.RP-1303.bam 19850471142 BAM submitted_aligned CPTAC3 dae8df85-70b5-4e69-a0f4-19e61192a933 025a53cd2294e9119f490295952f0beb {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00438.WXS.T.hg38 C3N-00438 CCRCC WXS tumor CPT0379430007 f81b19a8-48b8-46cf-9bec-dfcd9b4b5422_wxs_gdc_realn.bam 27271920206 BAM harmonized CPTAC3 c3706227-e7b3-4aee-977d-c1120230677b 2741a104232a31b96290d01d03c4bcd7 {"aliquot_tag": "ALQ_fc4282a7", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00439.MethArray.Green.A C3N-00439 CCRCC Methylation_Array tissue_normal CPT0379510007 205555380161_R05C01_Grn.idat 13677960 IDAT Green NA CPTAC3 16a71379-9ce4-4eb3-982c-d2353e3d89bc 0607fb806fcb0fabfc63a4842626c3fd {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00439.MethArray.Green.T C3N-00439 CCRCC Methylation_Array tumor CPT0379480010 205555380161_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 31a58a32-5ba0-43e3-8690-2f2e3cb9ad81 7ebb54ae00b66133c1c1073d2aa4d11c {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.MethArray.Red.A C3N-00439 CCRCC Methylation_Array tissue_normal CPT0379510007 205555380161_R05C01_Red.idat 13677960 IDAT Red NA CPTAC3 fdeda4dc-15ab-4507-9f31-5006afe77d51 50877822b0b2534581522f9261050bed {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00439.MethArray.Red.T C3N-00439 CCRCC Methylation_Array tumor CPT0379480010 205555380161_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 d35a042c-81a2-4145-aa71-4aadf9160a74 e54722de86f6e511920d973707df5fcc {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.miRNA-Seq.S37_L003_R1.T C3N-00439 CCRCC miRNA-Seq tumor CPT0379480007 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGAAG_S37_L003_R1_001.unaln.bam 350454256 BAM S37_L003_R1 submitted_unaligned CPTAC3 da88d0a5-45c0-4c3b-a43b-0efe761e48cf b3ef15c7fe3f8f054f9ca0e98bf73ce9 {"aliquot_tag": "ALQ_8b92b3b6", "sample": "S37", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.miRNA-Seq.T.hg38 C3N-00439 CCRCC miRNA-Seq tumor CPT0379480007 d1e7532c-3928-4eeb-bdeb-2c9257da9043_mirnaseq_gdc_realn.bam 376592677 BAM harmonized CPTAC3 3faad217-423d-4e56-92d3-860a853daf6f 0283c8834319682e46c061a2546253a0 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.RNA-Seq.chimeric.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.chimeric.gdc_realn.bam 239250074 BAM chimeric harmonized CPTAC3 717ebbb6-31f2-4e3e-9911-5e6af769fe74 14899df8548c3710966576eb9ea57518 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.RNA-Seq.genomic.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.genomic.gdc_realn.bam 7774010010 BAM genomic harmonized CPTAC3 2851ce19-7348-49d3-8f06-ec261d3e27ff 2d500d1d081a3ff8f904601478abf0d3 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.RNA-Seq.S10_L004_R1.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R1_001.fastq.gz 3476102077 FASTQ S10_L004_R1 submitted_unaligned CPTAC3 d8da199c-0cc2-4309-bc89-fe4b9c98fab7 31c355e5c168182488e293475ec7fe99 {"aliquot_tag": "ALQ_8b92b3b6", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.RNA-Seq.S10_L004_R2.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R2_001.fastq.gz 3876391287 FASTQ S10_L004_R2 submitted_unaligned CPTAC3 1b720778-8404-4f33-a358-821f2e4f9777 8c8c00abcf8dcab501829f87df3984d7 {"aliquot_tag": "ALQ_8b92b3b6", "sample": "S10", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.RNA-Seq.transcriptome.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.transcriptome.gdc_realn.bam 6343453525 BAM transcriptome harmonized CPTAC3 967d23b0-1261-4331-9f09-6def6ddc4605 d3ee234d421ad25d19565a690a5652c6 {"aliquot_tag": "ALQ_8b92b3b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.scRNA-Seq.S4_L002_R1.T C3N-00439 CCRCC scRNA-Seq tumor CPT0379480005 20220127_WUSTL_TWFU-CPT0379480005-Y1N1Z1_1Bn1_1_ATAGGGCGAG+TGCATCGAGT_S4_L002_R1_001.fastq.gz 5308570857 FASTQ S4_L002_R1 submitted_unaligned CPTAC3 cec6c9e9-5605-440e-b4b0-1eafd0837f2c ef8c94d4196cb6999ef50fb418dbd0d1 {"aliquot_tag": "ALQ_659cd29a", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.scRNA-Seq.S4_L002_R2.T C3N-00439 CCRCC scRNA-Seq tumor CPT0379480005 20220127_WUSTL_TWFU-CPT0379480005-Y1N1Z1_1Bn1_1_ATAGGGCGAG+TGCATCGAGT_S4_L002_R2_001.fastq.gz 18328318712 FASTQ S4_L002_R2 submitted_unaligned CPTAC3 99caff09-18db-46e5-a793-a352e1b92e4d 707452d44d87504f8571ee62c07becd2 {"aliquot_tag": "ALQ_659cd29a", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.WGS.N C3N-00439 CCRCC WGS blood_normal CPT0379570002 CPT0379570002.WholeGenome.RP-2158.bam 28922239242 BAM submitted_aligned CPTAC3 aa566fab-6e2c-436d-b470-eb2d53002255 cfdf45675574c5d997ab5777e1faf8d7 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00439.WGS.N.hg38 C3N-00439 CCRCC WGS blood_normal CPT0379570002 9895ad60-a9ed-4923-8405-36f7bbfbac98_wgs_gdc_realn.bam 88060239999 BAM harmonized CPTAC3 159352a4-acac-430d-8389-1491f5fc1dd7 02e2b402a38bce9a5281617365a6c993 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00439.WGS.T C3N-00439 CCRCC WGS tumor CPT0379480010 CPT0379480010.WholeGenome.RP-2158.bam 32821041446 BAM submitted_aligned CPTAC3 e6af19b8-c939-44c8-b0bb-b1fec6477bfe 4cd63d82c51a304d9e47dadb16b359e1 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.WGS.T.hg38 C3N-00439 CCRCC WGS tumor CPT0379480010 83e8a157-3c06-4c3d-9cd9-558cba89c314_wgs_gdc_realn.bam 102313888680 BAM harmonized CPTAC3 7320615f-f97a-4b3f-9aa8-ebb477add16c 5a5ddc80f1b1139e544040096997b515 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.WXS.A C3N-00439 CCRCC WXS tissue_normal CPT0379510007 CPT0379510007.WholeExome.RP-1303.bam 23024297567 BAM submitted_aligned CPTAC3 2500e877-9385-4627-9807-2a7a2d4aeacb 2031621f2eb5bc9af836e2e1b6575f8f {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00439.WXS.A.hg38 C3N-00439 CCRCC WXS tissue_normal CPT0379510007 f4746b23-44e4-4a96-88b0-00523d65941f_wxs_gdc_realn.bam 31946092131 BAM harmonized CPTAC3 c8d0995a-60b4-49ef-9ca7-9e781849da9c 6bacd9ac60fc91fe4e0857ac7f16a7cb {"aliquot_tag": "ALQ_4dde0262", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-00439.WXS.N C3N-00439 CCRCC WXS blood_normal CPT0379570002 CPT0379570002.WholeExome.RP-1303.bam 22386079062 BAM submitted_aligned CPTAC3 40628b62-3fc6-4924-ad15-b03917f316e2 eb8ebce52650933d709d77269229d8b0 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00439.WXS.N.hg38 C3N-00439 CCRCC WXS blood_normal CPT0379570002 9895ad60-a9ed-4923-8405-36f7bbfbac98_wxs_gdc_realn.bam 30893236980 BAM harmonized CPTAC3 7b515dc9-e674-4429-a972-dc2881b2d808 fa576ee50d863775b005b11f9ef54f23 {"aliquot_tag": "ALQ_b2f4034d", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-00439.WXS.T C3N-00439 CCRCC WXS tumor CPT0379480010 CPT0379480010.WholeExome.RP-1303.bam 24587835851 BAM submitted_aligned CPTAC3 7d736e56-5c02-4864-9558-6fe41ad19f09 3a265d63ecd1bcf4d303763f9f6cc1a8 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00439.WXS.T.hg38 C3N-00439 CCRCC WXS tumor CPT0379480010 83e8a157-3c06-4c3d-9cd9-558cba89c314_wxs_gdc_realn.bam 33968896771 BAM harmonized CPTAC3 61b0760a-8be3-48d8-8cf8-ed7ea80223e7 e914ddd5419088d885d253ad02004d73 {"aliquot_tag": "ALQ_ced1754", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00440.MethArray.Green.T C3N-00440 CCRCC Methylation_Array tumor CPT0379590007 205555390157_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e593e721-b024-44a1-81cb-74d1ad2d18eb 2773378f0aa95773e7d2de1014e65344 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.MethArray.Red.T C3N-00440 CCRCC Methylation_Array tumor CPT0379590007 205555390157_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 62a63f33-a05d-46ce-85c4-e93d7c8aa738 b4e669c051bd02be1632f2aee2e7ad6c {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.miRNA-Seq.S32_L003_R1.T C3N-00440 CCRCC miRNA-Seq tumor CPT0379590010 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAATCG_S32_L003_R1_001.unaln.bam 286413272 BAM S32_L003_R1 submitted_unaligned CPTAC3 c80ce0e9-a709-4347-8fff-b6c0c7aa9a0b 3622928a3f2acaa014cd5b7540a21824 {"aliquot_tag": "ALQ_fad1ed41", "sample": "S32", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.miRNA-Seq.T.hg38 C3N-00440 CCRCC miRNA-Seq tumor CPT0379590010 63c7f828-b880-4837-9d33-c01dfbad5d2c_mirnaseq_gdc_realn.bam 314173712 BAM harmonized CPTAC3 e97f22a2-bda8-4625-8a1a-b2629244480a d30d6c0a3ecf6c95da80298b879697d1 {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.RNA-Seq.chimeric.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.chimeric.gdc_realn.bam 445625343 BAM chimeric harmonized CPTAC3 fdf786a6-dc56-45bf-b347-02f0fae23bea 85ab3b6c69e958e26099338d8239a0d6 {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.RNA-Seq.genomic.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.genomic.gdc_realn.bam 8736395036 BAM genomic harmonized CPTAC3 2294d2a2-334e-49df-918c-c2c359f40770 c3baf874722e044cc5c915304baeb83e {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.RNA-Seq.S16_L005_R1.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R1_001.fastq.gz 4211639778 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 0348b2b8-436b-4639-bdaf-40055f305e33 cdbcbb35e9564a0d08956a130971e354 {"aliquot_tag": "ALQ_fad1ed41", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.RNA-Seq.S16_L005_R2.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R2_001.fastq.gz 4644340351 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 5e9f02c8-b9eb-4052-a157-246587d91d0b 2a641211dd7d93c47ed49b06462a0797 {"aliquot_tag": "ALQ_fad1ed41", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.RNA-Seq.transcriptome.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.transcriptome.gdc_realn.bam 9544738303 BAM transcriptome harmonized CPTAC3 7042f72f-cb9a-4a5d-89cb-4ce7f74e3c7e 52270d491fdc710552f6df66e1f9c408 {"aliquot_tag": "ALQ_fad1ed41", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.WGS.N C3N-00440 CCRCC WGS blood_normal CPT0379620002 CPT0379620002.WholeGenome.RP-2158.bam 35460612041 BAM submitted_aligned CPTAC3 240b2e4d-e444-4be2-b940-339fe2809293 52dc114754f4f87fb024ae99d19ac21c {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00440.WGS.N.hg38 C3N-00440 CCRCC WGS blood_normal CPT0379620002 e1f2cc11-b51a-4c43-9f43-711388ed0bf1_wgs_gdc_realn.bam 102881587761 BAM harmonized CPTAC3 c572aeac-e69f-43a0-aabc-144a4a239427 7c3a3fa0af0cfbcb65c5c1346d1599a7 {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00440.WGS.T C3N-00440 CCRCC WGS tumor CPT0379590007 CPT0379590007.WholeGenome.RP-2158.bam 21566140388 BAM submitted_aligned CPTAC3 154513e7-6da2-4442-a263-9788d0d50e32 c59d618ace2d519fc38a759a4072fb41 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.WGS.T.hg38 C3N-00440 CCRCC WGS tumor CPT0379590007 2fd4e91c-35f9-4493-b4e7-03a44047d1a1_wgs_gdc_realn.bam 64610997425 BAM harmonized CPTAC3 4affe234-7699-44cd-8e91-626d47876142 0acb5af75152c8775825dda73765b666 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.WXS.N C3N-00440 CCRCC WXS blood_normal CPT0379620002 CPT0379620002.WholeExome.RP-1303.bam 23652486375 BAM submitted_aligned CPTAC3 a113bcf3-e2f8-479b-b295-d26ef8e66e4b 702b8b172d83293386bfd39116c9f7f7 {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00440.WXS.N.hg38 C3N-00440 CCRCC WXS blood_normal CPT0379620002 e1f2cc11-b51a-4c43-9f43-711388ed0bf1_wxs_gdc_realn.bam 32823392335 BAM harmonized CPTAC3 936a305c-09eb-45e2-8946-2316fcbe3efe d6278cfc95008a67999eee9a4e3456a2 {"aliquot_tag": "ALQ_fc80fe93", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-00440.WXS.T C3N-00440 CCRCC WXS tumor CPT0379590007 CPT0379590007.WholeExome.RP-1303.bam 22529725564 BAM submitted_aligned CPTAC3 68ef5feb-0801-4f3d-9bdd-9e73176cc912 ba55afaa083690619de1ba4a4f669b76 {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00440.WXS.T.hg38 C3N-00440 CCRCC WXS tumor CPT0379590007 2fd4e91c-35f9-4493-b4e7-03a44047d1a1_wxs_gdc_realn.bam 31012916639 BAM harmonized CPTAC3 2c44d632-8d2f-43d2-a41d-8ed9855a653e fa2b75fb2579e617a01414d8bd15cb2b {"aliquot_tag": "ALQ_7dae49a3", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00466.MethArray.Green.Tpb C3N-00466 AML Methylation_Array tumor_peripheral_blood CPT0023040001 202163550007_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 09a50e23-bcc0-44d9-9e0d-d2afd4d79579 6fc362d9e30485c59d31878d21a48bf1 {"aliquot_tag": "ALQ_e98dd47b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.MethArray.Red.Tpb C3N-00466 AML Methylation_Array tumor_peripheral_blood CPT0023040001 202163550007_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 490313e4-9601-464d-a661-0fa284fbf898 d6c7b1bd85e93c49a3e25ea5a1829bc8 {"aliquot_tag": "ALQ_e98dd47b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.RNA-Seq.chimeric.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.chimeric.gdc_realn.bam 66682033 BAM chimeric harmonized CPTAC3 0fc18851-6427-4b2c-9f47-345cf8ecc030 648fcf964b5d29efc72bdf799c99c972 {"aliquot_tag": "ALQ_5bad086b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.RNA-Seq.genomic.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.genomic.gdc_realn.bam 6521149522 BAM genomic harmonized CPTAC3 306e901b-7acc-42c1-9b8b-3fb097269955 566a4c14157aabc1e1b3c95cb9a9b797 {"aliquot_tag": "ALQ_5bad086b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.RNA-Seq.S6_L002_R1.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R1_001.fastq.gz 2816749437 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 b69f393c-3bf9-4132-b5c1-238fc1859cb9 385e0df921737e91d3108a3ccf9ee83c {"aliquot_tag": "ALQ_5bad086b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.RNA-Seq.S6_L002_R2.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R2_001.fastq.gz 3034415884 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 5b6f2efe-8d73-4761-8059-bc09af777a4f 8f9d5e508edce6bcf93f7ab7897e23e2 {"aliquot_tag": "ALQ_5bad086b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.RNA-Seq.transcriptome.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.transcriptome.gdc_realn.bam 6404588979 BAM transcriptome harmonized CPTAC3 86b52422-68d7-4796-841d-1d78fa1bfdac 1197ce93c9ab6427f3ad79e9a02f7b49 {"aliquot_tag": "ALQ_5bad086b", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.WGS.Nbc C3N-00466 AML WGS buccal_normal CPT0023130002 CPT0023130002.WholeGenome.RP-1303.bam 74044344782 BAM submitted_aligned CPTAC3 0cfd2d71-7b69-458b-97a3-4ae8d52ced75 67ac0b37bd94be4cfb68b815d482bba2 {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00466.WGS.Nbc.hg38 C3N-00466 AML WGS buccal_normal CPT0023130002 bd331a7b-50b2-4809-b754-ccd11174469b_gdc_realn.bam 117507605338 BAM harmonized CPTAC3 08d94116-dda1-410e-96e6-736a0455df56 3db9fe230d13551f79f5e70a2b8096ce {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00466.WGS.Tpb C3N-00466 AML WGS tumor_peripheral_blood CPT0023020001 CPT0023020001.WholeGenome.RP-1303.bam 82871237582 BAM submitted_aligned CPTAC3 fb1f6098-5e12-4723-b880-3ebc5be8dbd6 d3cb74a1380431a6fdff1d6822170e97 {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.WGS.Tpb.hg38 C3N-00466 AML WGS tumor_peripheral_blood CPT0023020001 edc4e890-f630-44f0-9123-7b7c9ae67ad0_gdc_realn.bam 123868552136 BAM harmonized CPTAC3 36e006d3-5445-4d59-ac64-f4fb3512656e 4884619455c8ca063b364930e8afc5b9 {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.WXS.Nbc C3N-00466 AML WXS buccal_normal CPT0023130002 CPT0023130002.WholeExome.RP-1303.bam 31161035888 BAM submitted_aligned CPTAC3 1c288c5e-809c-428d-89a5-a5c915af1f3d fed86b36b8c7303be1409dee41ddff4d {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00466.WXS.Nbc.hg38 C3N-00466 AML WXS buccal_normal CPT0023130002 bd331a7b-50b2-4809-b754-ccd11174469b_gdc_realn.bam 42851181309 BAM harmonized CPTAC3 59f07b0c-05bb-4ac1-9e1c-1f4f7751620d d7673c24bf0dc4e8ad311585f74b5c67 {"aliquot_tag": "ALQ_9f88a74", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00466.WXS.Tpb C3N-00466 AML WXS tumor_peripheral_blood CPT0023020001 CPT0023020001.WholeExome.RP-1303.bam 28909426992 BAM submitted_aligned CPTAC3 06a0238f-4619-4b10-9075-18ab9797006d f6486e5e6d0fb0482c2566a8b285524a {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00466.WXS.Tpb.hg38 C3N-00466 AML WXS tumor_peripheral_blood CPT0023020001 edc4e890-f630-44f0-9123-7b7c9ae67ad0_gdc_realn.bam 39956842147 BAM harmonized CPTAC3 02f8d03c-1ec4-4a2a-a3fe-4582d19c7b5a 68a9e3996b026d7fa6371ad71f6c47b0 {"aliquot_tag": "ALQ_66cd21db", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} +C3N-00491.MethArray.Green.A C3N-00491 CCRCC Methylation_Array tissue_normal CPT0012640009 204930630084_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 382a37df-1ea4-4830-9872-861fb10a88fd 76b387b10821a9a0597f85ee24dfcbee {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.MethArray.Green.T C3N-00491 CCRCC Methylation_Array tumor CPT0012670006 202184990052_R01C01_Grn.idat 13676228 IDAT Green NA CPTAC3 55200eec-94a7-4831-9a44-8c9b7ba84213 ab20537c4c7c4ca1914f82004153ce93 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.MethArray.Red.A C3N-00491 CCRCC Methylation_Array tissue_normal CPT0012640009 204930630084_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 0c2f5940-a440-4d2d-aed7-4b8e2aa0b635 962244dbfc76ed67ca3bc7f3998547c9 {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.MethArray.Red.T C3N-00491 CCRCC Methylation_Array tumor CPT0012670006 202184990052_R01C01_Red.idat 13676228 IDAT Red NA CPTAC3 d4723e5b-e407-4a2b-b0cd-f74f8b64ee9a 6b4f49e7644113a96cfd742947d70484 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.miRNA-Seq.A.hg38 C3N-00491 CCRCC miRNA-Seq tissue_normal CPT0012640006 29287986-403f-48e8-89fe-e65991fa9727_mirnaseq_gdc_realn.bam 277959678 BAM harmonized CPTAC3 e5d9fe70-6a7b-41d1-b428-015896536dbd 0d32df45edf2fa92a3b9c94b5aa2ed65 {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.miRNA-Seq.S24_L001_R1.T C3N-00491 CCRCC miRNA-Seq tumor CPT0012670009 181113_UNC31-K00269_0164_AH23NNBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 196970792 BAM S24_L001_R1 submitted_unaligned CPTAC3 e71cb4a3-be64-4c00-9f43-b9338edc5dee 4c8ab079d55f9f3e6d7da2ccfcc8315b {"aliquot_tag": "ALQ_5e57c9d3", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.miRNA-Seq.S37_L004_R1.A C3N-00491 CCRCC miRNA-Seq tissue_normal CPT0012640006 181108_UNC31-K00269_0163_BH23TVBBXY_CGGAAT_S37_L004_R1_001.unaln.bam 252738899 BAM S37_L004_R1 submitted_unaligned CPTAC3 483dcbcc-0f59-4469-a71f-366db18303d4 b4dda46280a89017e95c413b50f7e6e5 {"aliquot_tag": "ALQ_8948ae92", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.miRNA-Seq.T.hg38 C3N-00491 CCRCC miRNA-Seq tumor CPT0012670009 130547b7-0c74-42ca-b572-b374621717ac_mirnaseq_gdc_realn.bam 216226801 BAM harmonized CPTAC3 52de5fa5-2011-425e-bc30-58f1a0d58acb 86bcc609652a65773d8da4110581f1d9 {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.RNA-Seq.chimeric.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.chimeric.gdc_realn.bam 65114385 BAM chimeric harmonized CPTAC3 f1a77706-eb69-43c4-acde-c31128d8021a af11b13c23d7e30c5fc06d2f0655c0cd {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.RNA-Seq.chimeric.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.chimeric.gdc_realn.bam 62198299 BAM chimeric harmonized CPTAC3 249c2682-a629-4d37-aba7-ac8cb0f58315 aa5baeee5ccfe39ed45d64512509b6f6 {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.RNA-Seq.genomic.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.genomic.gdc_realn.bam 7911475016 BAM genomic harmonized CPTAC3 e63c2021-4fd9-45db-8952-51cc6c9972f7 fe2e49ae09038be7b4a5d6aeedb24fed {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.RNA-Seq.genomic.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.genomic.gdc_realn.bam 6728746914 BAM genomic harmonized CPTAC3 ad314b59-8218-49e6-a43b-cd114cee466f ca7c13a941d0a26f082173e8f8163a49 {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.RNA-Seq.S21_L006_R1.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3192212258 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 2f6994ee-d320-4923-af43-167c5670d988 eb42612b85609c0e29b457401d6695d1 {"aliquot_tag": "ALQ_5e57c9d3", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.RNA-Seq.S21_L006_R2.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3433672047 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 2b86d9b0-c43d-4089-b72d-bc374d152fd0 2de29d94e0b734ac206d4d1db857baf2 {"aliquot_tag": "ALQ_5e57c9d3", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.RNA-Seq.S49_L005_R1.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R1_001.fastq.gz 3666714942 FASTQ S49_L005_R1 submitted_unaligned CPTAC3 b4814c36-6e4b-45f5-91fa-79b5ec41ae42 7ea6ce693a7e26a1359392a5e16eb97b {"aliquot_tag": "ALQ_8948ae92", "sample": "S49", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.RNA-Seq.S49_L005_R2.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R2_001.fastq.gz 3846780589 FASTQ S49_L005_R2 submitted_unaligned CPTAC3 07455c3f-d477-4c70-9b4b-00a44c06f8a3 439b1bcdc9490fd8f5931962ef50a2a3 {"aliquot_tag": "ALQ_8948ae92", "sample": "S49", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.RNA-Seq.transcriptome.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.transcriptome.gdc_realn.bam 8406356687 BAM transcriptome harmonized CPTAC3 df947cdd-c5b6-4db0-b7be-983b2a6e6724 80b43a718f198362ef0524bad7debe2c {"aliquot_tag": "ALQ_8948ae92", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.RNA-Seq.transcriptome.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.transcriptome.gdc_realn.bam 8698786303 BAM transcriptome harmonized CPTAC3 be3a2b8a-7fd6-43d3-b6fa-96c951362c21 7e9304f37e5861dc9ce0cbb50a3ebfba {"aliquot_tag": "ALQ_5e57c9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.WGS.A C3N-00491 CCRCC WGS tissue_normal CPT0012640009 CPT0012640009.WholeGenome.RP-1303.bam 55624299568 BAM submitted_aligned CPTAC3 a21dffb0-0bde-4340-bd51-8d0359631aae f2b28e40f164f4a9911bbf66acf2dfc0 {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.WGS.A.hg38 C3N-00491 CCRCC WGS tissue_normal CPT0012640009 a1494126-f9eb-4f5a-8306-ab4ab98aae2f_wgs_gdc_realn.bam 80821524405 BAM harmonized CPTAC3 e0179142-8ff3-402c-8e8c-440caed23572 6179c6431d66f8398e1463e15fdfb33c {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.WGS.N C3N-00491 CCRCC WGS blood_normal CPT0012730002 CPT0012730002.WholeGenome.RP-1303.bam 75848425895 BAM submitted_aligned CPTAC3 b32b656d-9c91-45e7-9541-06609ad9ad78 78735bc257f3d51aecfdf7f58634425d {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00491.WGS.N.hg38 C3N-00491 CCRCC WGS blood_normal CPT0012730002 b62b82e1-469c-44c3-a9b5-e52c05d760e9_gdc_realn.bam 110100903302 BAM harmonized CPTAC3 cffe7716-affb-4c8f-a188-9d741c81a0ad 164f3ab66d0e0960547c321ce41ab505 {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00491.WGS.T C3N-00491 CCRCC WGS tumor CPT0012670006 CPT0012670006.WholeGenome.RP-1303.bam 63631809941 BAM submitted_aligned CPTAC3 6cd3b6aa-86ab-411d-8248-ac3fd4835fd1 a4654715c16daee855724ae794aabd54 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.WGS.T.hg38 C3N-00491 CCRCC WGS tumor CPT0012670006 659ab3b8-28e2-4b3a-9659-41ad4fcc8aa0_gdc_realn.bam 94213885708 BAM harmonized CPTAC3 b1ce6372-51c8-4a7b-9591-5b5a9a38b837 eb195d9a4bd5d62dbafdc31d7058cd91 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.WXS.A C3N-00491 CCRCC WXS tissue_normal CPT0012640009 CPT0012640009.WholeExome.RP-1303.bam 47901462544 BAM submitted_aligned CPTAC3 a176f4f2-37c8-47f6-8f02-f19f7eefc905 983b6d1a51004a63cde1ad3a802c410d {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.WXS.A.hg38 C3N-00491 CCRCC WXS tissue_normal CPT0012640009 a1494126-f9eb-4f5a-8306-ab4ab98aae2f_wxs_gdc_realn.bam 64758553920 BAM harmonized CPTAC3 524c60ed-dab7-4e3f-a205-340ce62fabe6 e5b847f0f2f1ac9b5afec0f4d41a8c42 {"aliquot_tag": "ALQ_19f7b303", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00491.WXS.N C3N-00491 CCRCC WXS blood_normal CPT0012730002 CPT0012730002.WholeExome.RP-1303.bam 43605667303 BAM submitted_aligned CPTAC3 48094c72-1f16-404d-b0d6-c7bc005b09c6 a5a6b5f9f2b459aca7db6291aadf0704 {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00491.WXS.N.hg38 C3N-00491 CCRCC WXS blood_normal CPT0012730002 b62b82e1-469c-44c3-a9b5-e52c05d760e9_gdc_realn.bam 58306096719 BAM harmonized CPTAC3 7392d32c-52df-4dd6-a9d0-e6484e76e636 57a2316292df576ea79336aeb1f35a96 {"aliquot_tag": "ALQ_f759653e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00491.WXS.T C3N-00491 CCRCC WXS tumor CPT0012670006 CPT0012670006.WholeExome.RP-1303.bam 21741493668 BAM submitted_aligned CPTAC3 0f2e7f06-4893-46e2-a854-d132d1e001c9 cd7de089ab20154c80fd91217fbdd50a {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00491.WXS.T.hg38 C3N-00491 CCRCC WXS tumor CPT0012670006 659ab3b8-28e2-4b3a-9659-41ad4fcc8aa0_gdc_realn.bam 29866584865 BAM harmonized CPTAC3 f0699b2a-8bda-49dc-8796-9c84f81672c6 59b877291bc9a6d7abd2dcb7a7774a51 {"aliquot_tag": "ALQ_cee8d442", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.MethArray.Green.A C3N-00492 CCRCC Methylation_Array tissue_normal CPT0012770009 204930640061_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dd94c993-d24a-4566-a9c2-c6d890e5eceb ef5c7466c1d22572dc81acf0ad5423df {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00492.MethArray.Green.T C3N-00492 CCRCC Methylation_Array tumor CPT0079180009 202176290105_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4007f916-eb4d-413c-9ebb-aedc942f2c0f f7aac6225e01ea2762d9ed8457d660e6 {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.MethArray.Red.A C3N-00492 CCRCC Methylation_Array tissue_normal CPT0012770009 204930640061_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 b6d210da-34d8-407c-9695-54f10f655e44 d1ebffb840cc032f8b8a599eb5064405 {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00492.MethArray.Red.T C3N-00492 CCRCC Methylation_Array tumor CPT0079180009 202176290105_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 0a025737-b7d9-4c17-8637-94665f068ab6 31c4c20132bf755173ce6b3875158901 {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.miRNA-Seq.S25_L005_R1.T C3N-00492 CCRCC miRNA-Seq tumor CPT0079180006 181119_UNC31-K00269_0165_AH27WCBBXY_ATCACG_S25_L005_R1_001.unaln.bam 173335269 BAM S25_L005_R1 submitted_unaligned CPTAC3 9a2d4bdb-1af8-4c2f-86aa-863eaa44354b f2f1a8d2d4e524c0b5c2d2001b56a752 {"aliquot_tag": "ALQ_95d52e56", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.miRNA-Seq.T.hg38 C3N-00492 CCRCC miRNA-Seq tumor CPT0079180006 3d777583-ff48-4f8a-9192-29a0408fd077_mirnaseq_gdc_realn.bam 193627985 BAM harmonized CPTAC3 5591bbbb-474a-4f97-bbb8-f9546fe8ae9a d44872254378c91f5c34993739ea11d7 {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.RNA-Seq.chimeric.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.chimeric.gdc_realn.bam 175913498 BAM chimeric harmonized CPTAC3 bcfbec0e-29ea-48f6-b5f3-eb147ec7a0f4 879af74b0034f0c580125c5a2bd61935 {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.RNA-Seq.genomic.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.genomic.gdc_realn.bam 8534592348 BAM genomic harmonized CPTAC3 5af8c7da-6220-4abe-b76d-a7e3daf4d764 ae736a51de9df3f21a7c22c323c90ffa {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.RNA-Seq.S10_L003_R1.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4287253516 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 24b6cd17-b856-4ca8-8ff1-ee1fa9c70e2b 7f80f213489a3b0db53f41f5181bd20c {"aliquot_tag": "ALQ_95d52e56", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.RNA-Seq.S10_L003_R2.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4547476920 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 5ac1e5d2-0e4e-4e8e-9d94-fe318ed2a013 7efd7a53c2a94306d56cbfa7a1b2a73e {"aliquot_tag": "ALQ_95d52e56", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.RNA-Seq.transcriptome.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.transcriptome.gdc_realn.bam 8177176440 BAM transcriptome harmonized CPTAC3 2ce2a57a-ddc7-4863-800c-f949fbb0feac 969341c8230240fc423f5c8b3bf92380 {"aliquot_tag": "ALQ_95d52e56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.WGS.A C3N-00492 CCRCC WGS tissue_normal CPT0012770009 CPT0012770009.WholeGenome.RP-1303.bam 59815465023 BAM submitted_aligned CPTAC3 a6a6f262-9a7f-4468-8b39-5f87b8579fad de1a256b4a4d99b4dcfcedf24b9e4e26 {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00492.WGS.A.hg38 C3N-00492 CCRCC WGS tissue_normal CPT0012770009 e2708c50-3927-412a-8769-c4ffd79a61bd_wgs_gdc_realn.bam 88466707880 BAM harmonized CPTAC3 29ea796b-0f9f-4dca-bf64-ab8358880f5e 74a2246c24794fa7a126e7a51a468db6 {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00492.WGS.N C3N-00492 CCRCC WGS blood_normal CPT0012820002 CPT0012820002.WholeGenome.RP-1303.bam 80673423695 BAM submitted_aligned CPTAC3 e96fde6d-fefe-44ae-9c42-e23798bcdc9d 9a325e398f18547509db52bf5da1032a {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00492.WGS.N.hg38 C3N-00492 CCRCC WGS blood_normal CPT0012820002 95f87da0-10c3-4119-ac35-19997d6e4bc8_gdc_realn.bam 120098380036 BAM harmonized CPTAC3 1138765a-0142-4bb8-96fb-4cc238c57ce3 596dc6e1441de5d86172605982b44a0f {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00492.WGS.T C3N-00492 CCRCC WGS tumor CPT0079180009 CPT0079180009.WholeGenome.RP-1303.bam 72945816861 BAM submitted_aligned CPTAC3 f93cf5d9-cdf3-4e1b-a029-8a9c67cb1d89 2f536a11b386f37fe2d7921e24ab671f {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.WGS.T.hg38 C3N-00492 CCRCC WGS tumor CPT0079180009 3c066ad7-5abe-4f2f-a975-8bc9f84e6e62_gdc_realn.bam 108607108245 BAM harmonized CPTAC3 34300b0a-29b9-4ef8-a3c7-6a222fcc360b 091b5b8e5d36a4806a36ecd7eb8171dd {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.WXS.A C3N-00492 CCRCC WXS tissue_normal CPT0012770009 CPT0012770009.WholeExome.RP-1303.bam 33247707203 BAM submitted_aligned CPTAC3 51579c01-162a-4b65-8ddf-cbc316697d2c 3fdcae23d4d0c1d57bc5f5b49f97014b {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00492.WXS.A.hg38 C3N-00492 CCRCC WXS tissue_normal CPT0012770009 e2708c50-3927-412a-8769-c4ffd79a61bd_wxs_gdc_realn.bam 44820933127 BAM harmonized CPTAC3 c9aefecc-62a2-4acc-9ed6-410ed62ecba9 7939b47e3b8af5171f232804a02574cd {"aliquot_tag": "ALQ_950b1a76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00492.WXS.N C3N-00492 CCRCC WXS blood_normal CPT0012820002 CPT0012820002.WholeExome.RP-1303.bam 31121662603 BAM submitted_aligned CPTAC3 85fc7c82-3827-489e-869f-89ad83c9a93d 4344c8a4bc327831f841b33401460c6a {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00492.WXS.N.hg38 C3N-00492 CCRCC WXS blood_normal CPT0012820002 95f87da0-10c3-4119-ac35-19997d6e4bc8_gdc_realn.bam 42289863592 BAM harmonized CPTAC3 9cf80f38-78a2-4635-a5bb-47785d7d5d08 e8d1797f63f631385d9f148f10f299da {"aliquot_tag": "ALQ_3b6ffe5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00492.WXS.T C3N-00492 CCRCC WXS tumor CPT0079180009 CPT0079180009.WholeExome.RP-1303.bam 29339564987 BAM submitted_aligned CPTAC3 8584f389-6a40-48a6-a5e6-313ef8296045 a93d0925880259442e86acfd5bdcc2fe {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00492.WXS.T.hg38 C3N-00492 CCRCC WXS tumor CPT0079180009 3c066ad7-5abe-4f2f-a975-8bc9f84e6e62_gdc_realn.bam 39921976347 BAM harmonized CPTAC3 addcc625-919f-4b3b-927f-9fc0366a48f7 007bcdc33a406d059b9ac30ec7e17b90 {"aliquot_tag": "ALQ_56a33c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_20418ea6.miRNA-Seq.S33_L002_R1.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012910009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGGCC_S33_L002_R1_001.unaln.bam 171116157 BAM S33_L002_R1 submitted_unaligned CPTAC3 71ff2f17-12b4-4f53-9252-11f846acc22e 3142bc71e9371eaebcdc9f033d119bea {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_20418ea6.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012910009 40e674e5-a06b-46f9-b604-e0145b171886_mirnaseq_gdc_realn.bam 194708761 BAM harmonized CPTAC3 3a1c57f7-1139-461a-8215-79a7f9c57597 7d391115e28087997040132ab06ad08e {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_20418ea6.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.chimeric.gdc_realn.bam 48040467 BAM chimeric harmonized CPTAC3 933c58a8-0119-4ba4-bdd6-f6970257bd77 11fc2b40a4e1f375fa0531e9cefd2702 {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_20418ea6.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.genomic.gdc_realn.bam 6612786504 BAM genomic harmonized CPTAC3 11999036-a4c5-4e4c-b627-48a7c70ef660 82c2dab49c18a22128a936dc7206f5cd {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_20418ea6.RNA-Seq.S14_L004_R1.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3125681078 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 d7c57fa6-a2da-435f-9c9e-090ea4ece298 82005b205dbf6b34e4cfa90389663b4a {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_20418ea6.RNA-Seq.S14_L004_R2.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3613516467 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 a51962b2-2228-4455-bcf6-57d6d4479067 73463c1eccebdf03f84af4280ec55873 {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_20418ea6.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.transcriptome.gdc_realn.bam 7169763181 BAM transcriptome harmonized CPTAC3 5f379e16-00e3-47f8-a0f2-745816c76796 9e0db79621aebc2c17da131844a5d916 {"aliquot_tag": "DUP_20418ea6", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_76b222e3.MethArray.Green.T C3N-00494 CCRCC Methylation_Array tumor CPT0012880006 204367490048_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1b16f23e-06d2-4606-b7d8-2ddef7a80d55 92d368262662657aecc174226e8f1e9f {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_76b222e3.MethArray.Red.T C3N-00494 CCRCC Methylation_Array tumor CPT0012880006 204367490048_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 3ebf84e4-729c-44de-88bb-94ec9d1202d3 fe47c31c5f2e05f77cb053ce6261abe6 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_76b222e3.WGS.T C3N-00494 CCRCC WGS tumor CPT0012880006 CPT0012880006.WholeGenome.RP-2158.bam 23565585031 BAM submitted_aligned CPTAC3 69b5f22a-49e3-46ca-b877-d2925aa5fe71 bf57da01eb76139249a141c3e9372ed5 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_76b222e3.WGS.T.hg38 C3N-00494 CCRCC WGS tumor CPT0012880006 3b5ef18d-9e91-4f54-aaae-724836ca0327_wgs_gdc_realn.bam 67146860374 BAM harmonized CPTAC3 e2b8994e-a1f1-4afa-8133-3b8bfd911a68 3d9506bfd88579b76afbb6deb9086a87 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_76b222e3.WXS.T C3N-00494 CCRCC WXS tumor CPT0012880006 CPT0012880006.WholeExome.RP-1303.bam 22127827129 BAM submitted_aligned CPTAC3 9a9b9068-4c38-45e3-82e4-423b4b7c8fbd a55249d0385b3f3b52b5b6b147be6c89 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_76b222e3.WXS.T.hg38 C3N-00494 CCRCC WXS tumor CPT0012880006 3b5ef18d-9e91-4f54-aaae-724836ca0327_wxs_gdc_realn.bam 30470072937 BAM harmonized CPTAC3 4160b4a2-ba65-428c-bdc3-574aa3a0b4b8 e897c3d8d5e076b28eab2bca33744062 {"aliquot_tag": "DUP_76b222e3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_b0fe9337.MethArray.Green.T C3N-00494 CCRCC Methylation_Array tumor CPT0012910006 204372030106_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7307db34-81e3-4ccd-a0d3-27b8cc58f3e5 a995a4a0cfe9bf0a738089fb64c1afdd {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_b0fe9337.MethArray.Red.T C3N-00494 CCRCC Methylation_Array tumor CPT0012910006 204372030106_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 0c166bf5-e29c-407d-bfcd-c7b8c39ac0bc b22ec11da983715e8ac7465e99dd5956 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_b0fe9337.WGS.T C3N-00494 CCRCC WGS tumor CPT0012910006 CPT0012910006.WholeGenome.RP-2158.bam 20169104164 BAM submitted_aligned CPTAC3 f565d2c9-995c-4e68-836c-1e46969f0e42 f53ff78f53c35c18316a63755f89e826 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_b0fe9337.WGS.T.hg38 C3N-00494 CCRCC WGS tumor CPT0012910006 4b79b8a6-8476-41b1-a6c7-92304a41007e_wgs_gdc_realn.bam 58720539122 BAM harmonized CPTAC3 58e39f53-bcd9-497d-9273-fed8dfb70630 1563d7f9b973b83ab43d5f3f1a1944e0 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_b0fe9337.WXS.T C3N-00494 CCRCC WXS tumor CPT0012910006 CPT0012910006.WholeExome.RP-1303.bam 21688955169 BAM submitted_aligned CPTAC3 2db36a86-7dd5-4423-9b1a-d8e2f05d8967 c1b5e21dfb30a8ff20ca55bfbc0aced0 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_b0fe9337.WXS.T.hg38 C3N-00494 CCRCC WXS tumor CPT0012910006 4b79b8a6-8476-41b1-a6c7-92304a41007e_wxs_gdc_realn.bam 30037059138 BAM harmonized CPTAC3 48b9cc61-1a9d-49f0-a636-b829de86b8d5 f17feb2d5471856cf159eb4ffa7948f4 {"aliquot_tag": "DUP_b0fe9337", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_e60d3f72.miRNA-Seq.S32_L002_R1.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012880009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGAAA_S32_L002_R1_001.unaln.bam 250835777 BAM S32_L002_R1 submitted_unaligned CPTAC3 c0ccf61f-58af-4e0a-b1bf-cadfd690c248 6fe3e608bbe5f118b6e0bd8cd31e2bf6 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_e60d3f72.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012880009 bac2e0e6-2f4e-4710-8714-0563133ca726_mirnaseq_gdc_realn.bam 278452951 BAM harmonized CPTAC3 63674e1f-033b-40e7-8b36-8cc02e29b070 ec62422d2402bb2b6711bf8ca1444329 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_e60d3f72.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.chimeric.gdc_realn.bam 62102027 BAM chimeric harmonized CPTAC3 0ec8c364-ae36-45ca-ae79-87b83c1d158e b6906302fe8254decf2229c0e44f458e {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_e60d3f72.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.genomic.gdc_realn.bam 8948795833 BAM genomic harmonized CPTAC3 1bd54066-e5f6-4e44-9abe-9eed89cbbe5d ca9a97932f31b7a77312124d0e1ae0ed {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_e60d3f72.RNA-Seq.S16_L004_R1.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4468034938 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 1bdb8c8b-dac9-44d8-9e24-c03902cb6052 10c68565be91bc657177e5223fa02f5c {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_e60d3f72.RNA-Seq.S16_L004_R2.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 5042833136 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 5ac4146a-1572-4b59-8388-c503f6beb946 79597706c38f3b7b15bd36ff1dcf9ad6 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.DUP_e60d3f72.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.transcriptome.gdc_realn.bam 13221551231 BAM transcriptome harmonized CPTAC3 b07eea9a-79e4-4e24-9dfc-e797ec648dee 7586028952db259a8cb0008a0e9904a7 {"aliquot_tag": "DUP_e60d3f72", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.MethArray.Green.A C3N-00494 CCRCC Methylation_Array tissue_normal CPT0012920009 204930630086_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 eef6b415-6bcc-4ddc-bd07-b5c026eb5793 db885830f60c6bcf880a19c99a808b35 {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.MethArray.Green.T C3N-00494 CCRCC Methylation_Array tumor CPT0012900010 202178770045_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 308bc5ea-6415-4670-a10c-3a68ddac1ab9 3c187bfb472beab973578217ffde1cf2 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.MethArray.Red.A C3N-00494 CCRCC Methylation_Array tissue_normal CPT0012920009 204930630086_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 17e7efe8-2ead-4635-b000-e8c92948c168 cdeebdb47190c719dce72ebbcf6a7e1c {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.MethArray.Red.T C3N-00494 CCRCC Methylation_Array tumor CPT0012900010 202178770045_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 3156833e-f69c-4e2f-b763-32aac3911075 bbf60f633f63be5b1cda004685e035bb {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.miRNA-Seq.A.hg38 C3N-00494 CCRCC miRNA-Seq tissue_normal CPT0012920013 37b95732-7fab-4d4c-852f-1d430d2acdb6_mirnaseq_gdc_realn.bam 258565508 BAM harmonized CPTAC3 2cee4075-5ca9-4745-85b8-f79f9519cb64 54c11bb1b460504fb23dbd0a8310ccb9 {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.miRNA-Seq.S15_L006_R1.A C3N-00494 CCRCC miRNA-Seq tissue_normal CPT0012920013 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L006_R1_001.unaln.bam 236623166 BAM S15_L006_R1 submitted_unaligned CPTAC3 b6519109-bd4e-4b8e-9505-4cbd8322dfb4 5284bf6e96f79cff1233fef706af76c2 {"aliquot_tag": "ALQ_9e2f2c29", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.miRNA-Seq.S8_L005_R1.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012900007 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L005_R1_001.unaln.bam 236256164 BAM S8_L005_R1 submitted_unaligned CPTAC3 64dc1096-8283-4834-a357-6af676f6f3f6 050ded186305b74649aa880ec732f94c {"aliquot_tag": "ALQ_fa998a11", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012900007 313bd6bb-d242-4f5e-83d2-fc33e941df98_mirnaseq_gdc_realn.bam 267919198 BAM harmonized CPTAC3 dcd1547c-aa1d-4b2a-8dbf-92d01620b514 31b741f4481b1d1eb8fe1d3583021408 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.RNA-Seq.chimeric.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.chimeric.gdc_realn.bam 140096324 BAM chimeric harmonized CPTAC3 738ad0af-574b-4f88-ad25-0c5dd36ca9fe a77c2ea71a303e7fb83d6afd03843111 {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.chimeric.gdc_realn.bam 66625420 BAM chimeric harmonized CPTAC3 a1079751-90b1-4f60-9409-8cc9553b706e 0f6b033aa39cef610e83a5b7cca0cf22 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.RNA-Seq.genomic.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.genomic.gdc_realn.bam 8260514294 BAM genomic harmonized CPTAC3 40accf62-5db7-41ca-a5cd-3c5e84547a01 e8d7e81ae1f81665a34afd020eb34057 {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.genomic.gdc_realn.bam 7017890475 BAM genomic harmonized CPTAC3 e5e39516-4596-41ab-93a6-5a4584ff5e7b c17b2a0796bdba6362e680f9904a3964 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.RNA-Seq.S18_L005_R1.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3444661736 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 6f33effb-eaec-4176-a032-7e7c017b66b6 d9f27f942a17e2ccd422af1e8735454f {"aliquot_tag": "ALQ_fa998a11", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.RNA-Seq.S18_L005_R2.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3573204620 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 9571a8f2-e58e-437d-930c-2c5c9073576e 65e538b435b95e246b37ecae0d5dc8b3 {"aliquot_tag": "ALQ_fa998a11", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.RNA-Seq.S43_L008_R1.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R1_001.fastq.gz 3429082012 FASTQ S43_L008_R1 submitted_unaligned CPTAC3 4206da2c-7976-4fe3-b4c0-84fd2c9e3b69 16c2f5859c86ab8bd0353218cd8f7d18 {"aliquot_tag": "ALQ_9e2f2c29", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.RNA-Seq.S43_L008_R2.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R2_001.fastq.gz 3743408251 FASTQ S43_L008_R2 submitted_unaligned CPTAC3 eee3dfdf-79e9-48ce-aaca-f047ef10c13b f57cf44785d34c73392011bece291365 {"aliquot_tag": "ALQ_9e2f2c29", "sample": "S43", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.RNA-Seq.transcriptome.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.transcriptome.gdc_realn.bam 7016355602 BAM transcriptome harmonized CPTAC3 5605098e-cde3-44bd-a3c4-a280fd724eb1 68fa068a620106293d3002cd58e8f1bc {"aliquot_tag": "ALQ_9e2f2c29", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.transcriptome.gdc_realn.bam 9001409742 BAM transcriptome harmonized CPTAC3 a2e6ae1d-a1b9-4396-91bf-05495d2ac94e d3b9f1a209ae329daa5a5cc6ecbebb30 {"aliquot_tag": "ALQ_fa998a11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.WGS.A C3N-00494 CCRCC WGS tissue_normal CPT0012920009 CPT0012920009.WholeGenome.RP-1303.bam 60573651552 BAM submitted_aligned CPTAC3 ee03ffb6-dfac-4d98-b863-9e1f256bcb74 b2b919fd1d865749df52d0047e6e95e9 {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.WGS.A.hg38 C3N-00494 CCRCC WGS tissue_normal CPT0012920009 f2cba9d9-e207-403e-9503-3866a6d4d880_wgs_gdc_realn.bam 87765061732 BAM harmonized CPTAC3 29b8d526-1d8a-45ff-a5c7-7b482540c7a5 e706bb2b6aaa044b391cd767955f08ce {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.WGS.N C3N-00494 CCRCC WGS blood_normal CPT0012980002 CPT0012980002.WholeGenome.RP-1303.bam 64327620891 BAM submitted_aligned CPTAC3 72227727-5ab1-49c2-b22d-7f798852fbe8 0eb0d794ed8453c50630b4c5b823651e {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00494.WGS.N.hg38 C3N-00494 CCRCC WGS blood_normal CPT0012980002 77c492cd-10e7-45f0-a55d-68b7ca8101ff_gdc_realn.bam 91489182503 BAM harmonized CPTAC3 23a6d334-3f9a-475c-acbb-4d51cd20f548 d7919566fcd07b3cc1b876bd141b2718 {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00494.WGS.T C3N-00494 CCRCC WGS tumor CPT0012900010 CPT0012900010.WholeGenome.RP-1303.bam 56917184216 BAM submitted_aligned CPTAC3 784a5a91-9528-42c3-9d91-809b0f8d333e d42eff67385856dc825f776f3d4ab075 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.WGS.T.hg38 C3N-00494 CCRCC WGS tumor CPT0012900010 6f1a51d2-1199-4988-bb66-719b652cd7df_gdc_realn.bam 82268205613 BAM harmonized CPTAC3 80da7a63-2dfa-42ae-8fe5-5bea8c7435b5 0c05ab876f71ca5570733ebdf33c31b3 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.WXS.A C3N-00494 CCRCC WXS tissue_normal CPT0012920009 CPT0012920009.WholeExome.RP-1303.bam 29851599198 BAM submitted_aligned CPTAC3 e59eafaa-4627-4a52-afaf-87a4dcbc9947 748c128a2ef65b219b0e08a1677c169c {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.WXS.A.hg38 C3N-00494 CCRCC WXS tissue_normal CPT0012920009 f2cba9d9-e207-403e-9503-3866a6d4d880_wxs_gdc_realn.bam 40465910541 BAM harmonized CPTAC3 75d6b734-1ed0-4186-a436-5ed4d2b0605c 8dda5a099c0a1464d1c241a037acb80f {"aliquot_tag": "ALQ_67e1f476", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00494.WXS.N C3N-00494 CCRCC WXS blood_normal CPT0012980002 CPT0012980002.WholeExome.RP-1303.bam 22910181033 BAM submitted_aligned CPTAC3 556501bb-8d4c-4ee8-bec3-247eba9332a9 2c770a3c71c597050899dd9c7b23897d {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00494.WXS.N.hg38 C3N-00494 CCRCC WXS blood_normal CPT0012980002 77c492cd-10e7-45f0-a55d-68b7ca8101ff_gdc_realn.bam 31153675734 BAM harmonized CPTAC3 b619cdc5-a036-42f3-8e92-276a81a52866 c7f58a02f4f3e24c5bbf6af19ec4a668 {"aliquot_tag": "ALQ_ba83355f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00494.WXS.T C3N-00494 CCRCC WXS tumor CPT0012900010 CPT0012900010.WholeExome.RP-1303.bam 26984326329 BAM submitted_aligned CPTAC3 19a381a0-b72f-4659-bdd0-aba4e89adf1c 3516d9122d89b21a72e77b056d2e42c9 {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00494.WXS.T.hg38 C3N-00494 CCRCC WXS tumor CPT0012900010 6f1a51d2-1199-4988-bb66-719b652cd7df_gdc_realn.bam 36953774725 BAM harmonized CPTAC3 d13873ad-167d-40e3-b2e4-5a829a1810fc e7e48c54bb6425694d8b0586c3a7dafa {"aliquot_tag": "ALQ_7de62ef3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.MethArray.Green.A C3N-00495 CCRCC Methylation_Array tissue_normal CPT0078530009 204930640064_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1e597357-051d-4d60-a7ba-6b488753bf77 a802261b41b9ab3a1011b92dfceeae55 {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.MethArray.Green.T C3N-00495 CCRCC Methylation_Array tumor CPT0078510009 202178770111_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f0c2d541-3eb2-4197-bfc9-d36b950dbd2d e778cecd43a54208a7cf6a4cd9643119 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.MethArray.Red.A C3N-00495 CCRCC Methylation_Array tissue_normal CPT0078530009 204930640064_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 bf247bca-36af-4579-a994-707eb5fb111f 8f27d48514ccf78d1bfc0c4350732e6a {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.MethArray.Red.T C3N-00495 CCRCC Methylation_Array tumor CPT0078510009 202178770111_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 52fefd7a-c3a7-4b33-bfa9-951fda3b13a9 10bf04d7d7883c0438e56bdda1626856 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.miRNA-Seq.A.hg38 C3N-00495 CCRCC miRNA-Seq tissue_normal CPT0078530006 85eec664-3b42-402a-bd58-e17b789ece36_mirnaseq_gdc_realn.bam 181210666 BAM harmonized CPTAC3 ab6ed3fb-758c-41d5-826d-e75e01f4b5f9 5b1a9b76e106158c45f702023da91bb4 {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.miRNA-Seq.S13_L008_R1.T C3N-00495 CCRCC miRNA-Seq tumor CPT0078510006 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L008_R1_001.unaln.bam 236074353 BAM S13_L008_R1 submitted_unaligned CPTAC3 543c733e-9191-4b8a-81a1-0054f11a8c95 331e188be19929f1b05db4b564dbbed5 {"aliquot_tag": "ALQ_a5230585", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.miRNA-Seq.S21_L003_R1.A C3N-00495 CCRCC miRNA-Seq tissue_normal CPT0078530006 181108_UNC31-K00269_0163_BH23TVBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 161315542 BAM S21_L003_R1 submitted_unaligned CPTAC3 b0fd4bb4-6a15-4f8f-8d5c-9f26cefdde07 205bb105cc716adf1063982717c650f0 {"aliquot_tag": "ALQ_dfe356e5", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.miRNA-Seq.T.hg38 C3N-00495 CCRCC miRNA-Seq tumor CPT0078510006 15a19df8-068b-4b46-b072-3bfa7b1ce309_mirnaseq_gdc_realn.bam 256508919 BAM harmonized CPTAC3 8c423516-5270-4bd6-8b28-066c45a6ee3d 60fb4e0431eacfb4159e6ca70ccf0b6e {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.RNA-Seq.chimeric.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.chimeric.gdc_realn.bam 70350335 BAM chimeric harmonized CPTAC3 c1709245-4e64-44bd-89c5-1f1af172035f 224b876f24f2a8602a284b9c2594ac07 {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.RNA-Seq.chimeric.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.chimeric.gdc_realn.bam 65034908 BAM chimeric harmonized CPTAC3 32d12f6c-ff9f-4f6c-a3ae-a5c85e310b6e 7260c0180ed9a58a43b5d77bc835c0a2 {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.RNA-Seq.genomic.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.genomic.gdc_realn.bam 8380069022 BAM genomic harmonized CPTAC3 a3030261-de4a-4cf2-8240-89513b414ade 91c0bf0ed347101cb6073e6c7481c031 {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.RNA-Seq.genomic.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.genomic.gdc_realn.bam 8431682893 BAM genomic harmonized CPTAC3 5f3cb28e-c63c-4682-a0b2-b61ac2227031 2c42f7b2909f895cda02ee34eecc78d9 {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.RNA-Seq.S15_L006_R1.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R1_001.fastq.gz 4319239976 FASTQ S15_L006_R1 submitted_unaligned CPTAC3 30d1940d-f271-4ba1-b30a-8eea0c8cfc0a e631b7b5d6972192cd881c8d0d4e56a1 {"aliquot_tag": "ALQ_a5230585", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.RNA-Seq.S15_L006_R2.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R2_001.fastq.gz 4611002202 FASTQ S15_L006_R2 submitted_unaligned CPTAC3 d8430241-6e92-4270-992c-69438cb7b217 06424933fd3f8f92755eee9643f6f647 {"aliquot_tag": "ALQ_a5230585", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.RNA-Seq.S8_L002_R1.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R1_001.fastq.gz 3991839423 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 4738be16-7eb0-4fb4-99d8-238e271c6ba1 7b08a64627ed81c2b4c4df12a1ff29a5 {"aliquot_tag": "ALQ_dfe356e5", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.RNA-Seq.S8_L002_R2.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R2_001.fastq.gz 4419153111 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 5c35e953-583d-4c81-bc60-2f95f4776e16 d9238e58ec0289cc203aa249c0f8fc1b {"aliquot_tag": "ALQ_dfe356e5", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.RNA-Seq.transcriptome.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.transcriptome.gdc_realn.bam 10262521940 BAM transcriptome harmonized CPTAC3 f6fe5b7b-054b-4f65-ad6b-abe2c06fea28 ff0c75d03b71886861d90583756f042b {"aliquot_tag": "ALQ_dfe356e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.RNA-Seq.transcriptome.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.transcriptome.gdc_realn.bam 13044034268 BAM transcriptome harmonized CPTAC3 c46a0749-9727-404e-9af9-9194779717ba edb1495b6c09f93668652e3fd331da5b {"aliquot_tag": "ALQ_a5230585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.WGS.A C3N-00495 CCRCC WGS tissue_normal CPT0078530009 CPT0078530009.WholeGenome.RP-1303.bam 62418425790 BAM submitted_aligned CPTAC3 6674e95d-d26e-4716-b6a2-eae690d6d775 c97a085f493ba2bfe1685fb4acd6ea9d {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.WGS.A.hg38 C3N-00495 CCRCC WGS tissue_normal CPT0078530009 18845e06-84c7-4e8c-b77f-eb2dd229f458_wgs_gdc_realn.bam 90460686899 BAM harmonized CPTAC3 073a5b62-68ed-432d-a7d3-bb77e2534531 884ed291345b5a36202241107f0c672f {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.WGS.N C3N-00495 CCRCC WGS blood_normal CPT0078570002 CPT0078570002.WholeGenome.RP-1303.bam 63228186673 BAM submitted_aligned CPTAC3 7d161dd4-cf66-43be-8b40-4a0d0b001320 74817585918ff42a6e0b154c7e047405 {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00495.WGS.N.hg38 C3N-00495 CCRCC WGS blood_normal CPT0078570002 92a60f1e-d6d9-4eed-9b90-d50c151d0381_gdc_realn.bam 95423514621 BAM harmonized CPTAC3 61a39a45-33d3-49bb-b5fd-da1d6bd4fe0c 78b1477be87e10ebdacde91b9b72c753 {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00495.WGS.T C3N-00495 CCRCC WGS tumor CPT0078510009 CPT0078510009.WholeGenome.RP-1303.bam 67932764239 BAM submitted_aligned CPTAC3 a8666f01-90ef-4987-8191-ae6b2f781c02 772d0ac9f4801977b1cf25b99adf8f30 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.WGS.T.hg38 C3N-00495 CCRCC WGS tumor CPT0078510009 77acae83-6dc6-4efe-8c93-1008974b60d9_gdc_realn.bam 101508453801 BAM harmonized CPTAC3 675b3ccf-2515-4b66-a988-e2a2bf7dbc33 614aa1c017f66b6197b0f9afa7c49bf0 {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.WXS.A C3N-00495 CCRCC WXS tissue_normal CPT0078530009 CPT0078530009.WholeExome.RP-1303.bam 38302995538 BAM submitted_aligned CPTAC3 2cf13aef-b404-4606-8106-ba5b88089bd0 39dcf5974b4daf22fdcd71f410ac6586 {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.WXS.A.hg38 C3N-00495 CCRCC WXS tissue_normal CPT0078530009 18845e06-84c7-4e8c-b77f-eb2dd229f458_wxs_gdc_realn.bam 51335790611 BAM harmonized CPTAC3 06fb9995-ba0a-4fa4-9e00-dad1f86e56b0 aa74ee32ef7a95babe6a461f4283acd9 {"aliquot_tag": "ALQ_4f5c4b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00495.WXS.N C3N-00495 CCRCC WXS blood_normal CPT0078570002 CPT0078570002.WholeExome.RP-1303.bam 30145054078 BAM submitted_aligned CPTAC3 fdc4d251-af66-4841-9288-c437b96e3722 d5c3e7d431d4c50e0ab6aeb64fdd47b8 {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00495.WXS.N.hg38 C3N-00495 CCRCC WXS blood_normal CPT0078570002 92a60f1e-d6d9-4eed-9b90-d50c151d0381_gdc_realn.bam 40355055601 BAM harmonized CPTAC3 496e0740-e279-480d-81ab-9d9644ca4a38 3042c778debcc480f50d342c8beccc6e {"aliquot_tag": "ALQ_2d0e343c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00495.WXS.T C3N-00495 CCRCC WXS tumor CPT0078510009 CPT0078510009.WholeExome.RP-1303.bam 37733398248 BAM submitted_aligned CPTAC3 44ad7b74-67df-49b5-8f7d-e0543ec34129 bfa3e7c5b2fb758e093155f5992d352f {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00495.WXS.T.hg38 C3N-00495 CCRCC WXS tumor CPT0078510009 77acae83-6dc6-4efe-8c93-1008974b60d9_gdc_realn.bam 50759379627 BAM harmonized CPTAC3 e1f00fb6-a3d8-4fa0-89c5-51391420efef 50465ad0d8935b7871bc62643b6f384b {"aliquot_tag": "ALQ_359c1814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00496.MethArray.Green.A C3N-00496 CCRCC Methylation_Array tissue_normal CPT0379670010 205589740003_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 eafb0c74-27b6-469f-8100-1dfb8e0d47a0 44f3d877279c6337d2a46e5b771fd0f6 {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00496.MethArray.Green.T C3N-00496 CCRCC Methylation_Array tumor CPT0379630015 205549600082_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 db37f7d9-80da-4bfd-884b-73a2c80e389a 3768e05adf1545dcec9f0b89f077259b {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.MethArray.Red.A C3N-00496 CCRCC Methylation_Array tissue_normal CPT0379670010 205589740003_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 6726375b-de4c-4117-a778-f11e246767ed 2336a1baf97ec4520f2cb644aaf1bacb {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00496.MethArray.Red.T C3N-00496 CCRCC Methylation_Array tumor CPT0379630015 205549600082_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 6ca56177-963a-4f81-843c-d44054e4d2ee 1313177e25f3e1693036db5f6c1e86a1 {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.miRNA-Seq.S41_L003_R1.T C3N-00496 CCRCC miRNA-Seq tumor CPT0379630012 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATCACG_S41_L003_R1_001.unaln.bam 227818716 BAM S41_L003_R1 submitted_unaligned CPTAC3 ff99013c-d2a4-4514-bf33-81ab2953b29c 8174121eab279698af1f78515d2cbdbf {"aliquot_tag": "ALQ_d8fbe662", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.miRNA-Seq.T.hg38 C3N-00496 CCRCC miRNA-Seq tumor CPT0379630012 3c053384-4119-47ed-bba1-e163bfd35bfa_mirnaseq_gdc_realn.bam 243070675 BAM harmonized CPTAC3 22188db3-37e4-4fba-ac06-4305f6ea59e8 fbaa8df680b7cd4c5b400b8289f8206c {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.RNA-Seq.chimeric.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.chimeric.gdc_realn.bam 70464722 BAM chimeric harmonized CPTAC3 bce6d269-a86a-4c4b-8299-11aad2fc4114 40aa20a6749b600573781cfc0373f7e7 {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.RNA-Seq.genomic.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.genomic.gdc_realn.bam 8681351149 BAM genomic harmonized CPTAC3 a51924e4-7bef-459a-9743-745995b62ac4 e52b807ba0ca129a6858b53fa416102b {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.RNA-Seq.S30_L008_R1.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4028324968 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 13b9c739-e5c8-4a14-9a77-8b2375da111f f2715831e82b75188181e53302f73a33 {"aliquot_tag": "ALQ_d8fbe662", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.RNA-Seq.S30_L008_R2.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4734387379 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 dbe21c0a-6051-4be1-ae32-1637b875cf8a a5a11ef51d1ea2ad24fc1acc7391f902 {"aliquot_tag": "ALQ_d8fbe662", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.RNA-Seq.transcriptome.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.transcriptome.gdc_realn.bam 10786553864 BAM transcriptome harmonized CPTAC3 93c39d8d-a0a8-4c2b-983b-23a239cc1e2e 0cdd782a24465de5a2a98644b2c3e5a6 {"aliquot_tag": "ALQ_d8fbe662", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.WGS.N C3N-00496 CCRCC WGS blood_normal CPT0379730002 CPT0379730002.WholeGenome.RP-2158.bam 23907424056 BAM submitted_aligned CPTAC3 52a3b6b0-ed63-48d9-af5c-4334b7ccc62b 68f2d27f6550ab035f2cdadb45f344dc {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00496.WGS.N.hg38 C3N-00496 CCRCC WGS blood_normal CPT0379730002 6672269a-f6f7-41a6-b611-39ba4502662b_wgs_gdc_realn.bam 71732320668 BAM harmonized CPTAC3 4882c3f4-e219-4aee-9e91-db3566038fad 50465af76a7bb715ed85321829529fb2 {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00496.WGS.T C3N-00496 CCRCC WGS tumor CPT0379630015 CPT0379630015.WholeGenome.RP-2158.bam 31784922699 BAM submitted_aligned CPTAC3 7a28d89b-36ad-4b85-a7a8-06fe6384c18d bc0dd4d59573f9cc218d20b175a191fc {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.WGS.T.hg38 C3N-00496 CCRCC WGS tumor CPT0379630015 1752f596-eb8d-4595-8c57-cd04c60a3cc6_wgs_gdc_realn.bam 96875269414 BAM harmonized CPTAC3 db9db329-5a80-45d2-a76c-ee0bed032325 86cf8d02d3a109555d012bcbff7d222c {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.WXS.A C3N-00496 CCRCC WXS tissue_normal CPT0379670010 CPT0379670010.WholeExome.RP-1303.bam 24362334857 BAM submitted_aligned CPTAC3 100a43ef-ec2a-4d38-a012-ba04481b0721 dd355a5a33016440f719aaa7afcfef5d {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00496.WXS.A.hg38 C3N-00496 CCRCC WXS tissue_normal CPT0379670010 c885a2d7-d576-42fa-b547-de05ef105979_wxs_gdc_realn.bam 33238594138 BAM harmonized CPTAC3 2a412a2f-2fe6-46e5-8f96-5085015c8a62 9f8ec848da8e183c5bb98b89d6191847 {"aliquot_tag": "ALQ_c375218e", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-00496.WXS.N C3N-00496 CCRCC WXS blood_normal CPT0379730002 CPT0379730002.WholeExome.RP-1303.bam 23818506896 BAM submitted_aligned CPTAC3 3b55bbf1-c957-4c3d-9cde-c075be54e9c0 c1b8fbc5bf20395309abe3e46d6e48e0 {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00496.WXS.N.hg38 C3N-00496 CCRCC WXS blood_normal CPT0379730002 6672269a-f6f7-41a6-b611-39ba4502662b_wxs_gdc_realn.bam 32979346906 BAM harmonized CPTAC3 28619a36-a4d5-4dfb-97dd-3748c3c74d75 b8a73e347d4c1adcd955e29fec617e49 {"aliquot_tag": "ALQ_abc0486", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-00496.WXS.T C3N-00496 CCRCC WXS tumor CPT0379630015 CPT0379630015.WholeExome.RP-1303.bam 24644183614 BAM submitted_aligned CPTAC3 be3ed678-e205-4e99-a877-b936388e97db 52eddd1f082542ea7f0f8bf8f7001d21 {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00496.WXS.T.hg38 C3N-00496 CCRCC WXS tumor CPT0379630015 1752f596-eb8d-4595-8c57-cd04c60a3cc6_wxs_gdc_realn.bam 34258417288 BAM harmonized CPTAC3 2e475714-5af0-43bd-ad0b-3ea7e5cede73 8c5f32a433267185de88d339a06570f8 {"aliquot_tag": "ALQ_469f73c1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00497.MethArray.Green.A C3N-00497 LSCC Methylation_Array tissue_normal CPT0079110009 203219670180_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c398a614-7cd5-437e-89a4-c74dc1557a25 b64528cce2fed8c0fa3f4a692c6e4583 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.MethArray.Green.T C3N-00497 LSCC Methylation_Array tumor CPT0079100009 202184990059_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3ef46cdb-c068-49b1-851e-c8554ab7162e 0b9c0d69962de7fce6e126bb709736d1 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.MethArray.Red.A C3N-00497 LSCC Methylation_Array tissue_normal CPT0079110009 203219670180_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 bc16ead5-a98b-4dc7-81ce-445206d7efc1 db3c6801754b950a8d9bb9309477e7dc {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.MethArray.Red.T C3N-00497 LSCC Methylation_Array tumor CPT0079100009 202184990059_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 c53f4dce-5bd5-4cea-b597-266706a02b2f f2fb04359021ab15cc6ac4fde9a034bb {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.miRNA-Seq.A.hg38 C3N-00497 LSCC miRNA-Seq tissue_normal CPT0079110006 d77040a9-3861-4fbd-8c50-ea64a5734896_mirnaseq_gdc_realn.bam 297933406 BAM harmonized CPTAC3 744b5277-2792-426a-816d-a526d5c4adcb d27a1335330761d5316d29e343dfb003 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.miRNA-Seq.S10_L008_R1.T C3N-00497 LSCC miRNA-Seq tumor CPT0079100006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L008_R1_001.unaln.bam 266032771 BAM S10_L008_R1 submitted_unaligned CPTAC3 7e784da4-cf3b-4d98-a0c9-686fe05943dd bde04e3862435cf3addcbed3f562bbc1 {"aliquot_tag": "ALQ_a5a56597", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.miRNA-Seq.S35_L006_R1.A C3N-00497 LSCC miRNA-Seq tissue_normal CPT0079110006 181113_UNC31-K00269_0164_AH23NNBBXY_GGCTAC_S35_L006_R1_001.unaln.bam 268565136 BAM S35_L006_R1 submitted_unaligned CPTAC3 5dfebc41-248e-4fc1-ab32-fdd755516157 7c6bf8ea327b94c6182ccff8c89c5dcf {"aliquot_tag": "ALQ_98c54c27", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.miRNA-Seq.T.hg38 C3N-00497 LSCC miRNA-Seq tumor CPT0079100006 3ec8b324-9ba4-4e6c-a1f9-4b041e09a076_mirnaseq_gdc_realn.bam 296970992 BAM harmonized CPTAC3 a377ec3b-3256-4ba6-b461-8f8ff634a45c e2fc7ce01368b97fb8c863f2b87429ab {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.RNA-Seq.chimeric.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.chimeric.gdc_realn.bam 53866959 BAM chimeric harmonized CPTAC3 64f60796-94e6-4a4c-a96e-830c274905d9 c2d0f7a479b84ea880316ea0184a6643 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.RNA-Seq.chimeric.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.chimeric.gdc_realn.bam 147968321 BAM chimeric harmonized CPTAC3 ad76f466-8de4-41c7-ab32-818673709413 6366ac4ffa9182a3c504bea5bb6f6e32 {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.RNA-Seq.genomic.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.genomic.gdc_realn.bam 10107793879 BAM genomic harmonized CPTAC3 e739c349-7952-4d7a-b6d7-cae90849241c 28b40e6f8f4997ed5464d1d6cca75801 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.RNA-Seq.genomic.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.genomic.gdc_realn.bam 9344228972 BAM genomic harmonized CPTAC3 4ad11ca3-8fde-4e54-b4f1-fc8c23b4e5d8 246e7f2bfc3a8fc59845c2f684e06c9f {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.RNA-Seq.S17_L005_R1.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4379456928 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 19a19ac1-2b61-496f-9ed2-fdc9ed5513ac c66ad2bf489457bb4268c451ebaa9586 {"aliquot_tag": "ALQ_98c54c27", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.RNA-Seq.S17_L005_R2.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4992615080 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 dd7d88a3-7b64-4f73-ae34-3d7b2e623cb0 953ed51451aadbd7fff5cef4b9eb9b97 {"aliquot_tag": "ALQ_98c54c27", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.RNA-Seq.S1_L001_R1.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4060660495 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 3abcf0ae-6cf0-4ad4-9818-824fc91c3f22 a7c56aa4e02c72dfa23f2073bcb1ab9d {"aliquot_tag": "ALQ_a5a56597", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.RNA-Seq.S1_L001_R2.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4537007198 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 fa89125b-2e2a-42a5-bfdd-471f7b71f0a4 962601f19206d889f9ede55493291fe5 {"aliquot_tag": "ALQ_a5a56597", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.RNA-Seq.transcriptome.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.transcriptome.gdc_realn.bam 11641702332 BAM transcriptome harmonized CPTAC3 935b302c-dc17-49ef-87c2-fcbd02558813 8d6e7199495ffa19ee9b3f83502c87e6 {"aliquot_tag": "ALQ_98c54c27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.RNA-Seq.transcriptome.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.transcriptome.gdc_realn.bam 10878842005 BAM transcriptome harmonized CPTAC3 50b8f4f2-0fc8-4082-b8ee-91e76f95dc6a 7cfc1adf619fdca6fa61a32776239b40 {"aliquot_tag": "ALQ_a5a56597", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.WGS.A C3N-00497 LSCC WGS tissue_normal CPT0079110009 CPT0079110009.WholeGenome.RP-1303.bam 56550526318 BAM submitted_aligned CPTAC3 a60441c3-bc4a-4f53-be46-370abe0a2736 d92fb134bf78c7e4df6a29821c356f6f {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.WGS.A.hg38 C3N-00497 LSCC WGS tissue_normal CPT0079110009 baf7ec82-a326-4be6-a469-1a24548643f1_wgs_gdc_realn.bam 81993469330 BAM harmonized CPTAC3 bec1eae8-9b6c-4139-ac14-8ae15ae345d1 c11409e5a50061446ab3e921ccf49669 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.WGS.N C3N-00497 LSCC WGS blood_normal CPT0079140002 CPT0079140002.WholeGenome.RP-1303.bam 62110681294 BAM submitted_aligned CPTAC3 313afa86-a1c3-46fd-8cef-bc769e1969d4 3dde89afd5ad38aa80ef5256a5777ae3 {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00497.WGS.N.hg38 C3N-00497 LSCC WGS blood_normal CPT0079140002 ea81ec55-f07b-4547-955c-d30f38815c4f_gdc_realn.bam 91139802227 BAM harmonized CPTAC3 573a65d6-7991-4edf-a387-fda73368928e f3dc48ad424017a9038fbff12907530d {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00497.WGS.T C3N-00497 LSCC WGS tumor CPT0079100009 CPT0079100009.WholeGenome.RP-1303.bam 62974445917 BAM submitted_aligned CPTAC3 eb5dcf11-2f7f-43ba-a155-8b338c19c098 8c5687d2030eef284e136622dc015ae2 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.WGS.T.hg38 C3N-00497 LSCC WGS tumor CPT0079100009 a505c2ad-3df9-4e1d-a4c0-de78601088a6_gdc_realn.bam 93673276262 BAM harmonized CPTAC3 24ad9c9b-7bb0-48bf-92ec-d8c5fe53e3ef 63a7fe2e82fa8c32e343c240b5615bd8 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.WXS.A C3N-00497 LSCC WXS tissue_normal CPT0079110009 CPT0079110009.WholeExome.RP-1303.bam 28134536764 BAM submitted_aligned CPTAC3 70f73750-503d-46b7-9e93-8982b324ec9e 12d3c6dee98069088b5a40f32d9d4d84 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.WXS.A.hg38 C3N-00497 LSCC WXS tissue_normal CPT0079110009 baf7ec82-a326-4be6-a469-1a24548643f1_wxs_gdc_realn.bam 37254230398 BAM harmonized CPTAC3 281278bc-9daf-4d4b-874c-7bdbdb7febfb a60c3838433a41be9e7796e7cff4e7f8 {"aliquot_tag": "ALQ_87a51b6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00497.WXS.N C3N-00497 LSCC WXS blood_normal CPT0079140002 CPT0079140002.WholeExome.RP-1303.bam 30000306246 BAM submitted_aligned CPTAC3 dec3ae35-4e9d-48c2-80d4-803b780356c5 7200d7fa36677f45b980ff76af9149fe {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00497.WXS.N.hg38 C3N-00497 LSCC WXS blood_normal CPT0079140002 ea81ec55-f07b-4547-955c-d30f38815c4f_gdc_realn.bam 40519337943 BAM harmonized CPTAC3 598a9eb0-2b5a-4f39-a887-06b08a40f2eb f854fb3095e401318aef22ca46d1f19d {"aliquot_tag": "ALQ_5748074e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00497.WXS.T C3N-00497 LSCC WXS tumor CPT0079100009 CPT0079100009.WholeExome.RP-1303.bam 28872877875 BAM submitted_aligned CPTAC3 1ff832e7-fb15-4536-a342-53426a77805c 45834cb8f251eb0b97f9243ed1eb2652 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00497.WXS.T.hg38 C3N-00497 LSCC WXS tumor CPT0079100009 a505c2ad-3df9-4e1d-a4c0-de78601088a6_gdc_realn.bam 39709733235 BAM harmonized CPTAC3 99921753-5bc6-4b6a-89dc-c7b006ac313a 61aa57e30bb6c99f86bc6fa563104447 {"aliquot_tag": "ALQ_351a7806", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.MethArray.Green.T C3N-00498 HNSCC Methylation_Array tumor CPT0013000010 202178770083_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f327bff1-5754-4838-a74f-3d1c865e4e67 e065939dfbc5c17ad72d55c6e104a8de {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.MethArray.Red.T C3N-00498 HNSCC Methylation_Array tumor CPT0013000010 202178770083_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6d2f5b49-db63-4b35-b932-c444e8c87eda fc6578bda626848e93bd430ab31b2c30 {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.miRNA-Seq.A.hg38 C3N-00498 HNSCC miRNA-Seq tissue_normal CPT0013030010 c8e46bc0-82af-4bbf-a588-8023d45362ca_mirnaseq_gdc_realn.bam 228172387 BAM harmonized CPTAC3 ad48d353-a1fe-41f2-b4db-b2573893d2a8 9c699ff6969d922fe6e73f6deed5cdee {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00498.miRNA-Seq.S21_L001_R1.T C3N-00498 HNSCC miRNA-Seq tumor CPT0013000007 180924_UNC31-K00269_0154_AHWTMLBBXX_GCCAAT_S21_L001_R1_001.unaln.bam 201276422 BAM S21_L001_R1 submitted_unaligned CPTAC3 445cd50c-52e5-4f10-874b-cd24163e8cc7 1c9cb8f28c92a6d81e5dea8fc99cc51c {"aliquot_tag": "ALQ_7be1d06d", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.miRNA-Seq.S8_L005_R1.A C3N-00498 HNSCC miRNA-Seq tissue_normal CPT0013030010 181113_UNC31-K00269_0164_AH23NNBBXY_CACTCA_S8_L005_R1_001.unaln.bam 201105215 BAM S8_L005_R1 submitted_unaligned CPTAC3 c7f029b5-7fb8-4a75-816c-88848a8b1d8a 24fbe9ad2225a3e1659f0a1e4bf87bf5 {"aliquot_tag": "ALQ_bb3e0e5f", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00498.miRNA-Seq.T.hg38 C3N-00498 HNSCC miRNA-Seq tumor CPT0013000007 312697f6-70ff-45ce-9092-376f86aa223d_mirnaseq_gdc_realn.bam 227808080 BAM harmonized CPTAC3 5b8d829f-81ad-4465-a9ed-f623530d2217 76f956c727901010c780bd76fd302407 {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.RNA-Seq.chimeric.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.chimeric.gdc_realn.bam 23225826 BAM chimeric harmonized CPTAC3 0cc87447-2554-4629-a1a3-7d4b7eb4fde8 d61f50b32672c3dfc1b267b876812ce7 {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00498.RNA-Seq.chimeric.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.chimeric.gdc_realn.bam 78981889 BAM chimeric harmonized CPTAC3 8bdfa029-8ff8-4be0-8f4c-57ce4f465a8a 0b612eec310084b31dd307c609ff7e60 {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.RNA-Seq.genomic.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.genomic.gdc_realn.bam 8385912780 BAM genomic harmonized CPTAC3 539009af-7588-41aa-baa4-d56452f2604c c8ee97e6b3775b0bb39f3c69cc82d21f {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00498.RNA-Seq.genomic.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.genomic.gdc_realn.bam 9737670945 BAM genomic harmonized CPTAC3 cbcf2eac-280f-4ad1-960f-f42f96843a90 08ba1aaa61b793c9fde7eec6f2a30e5b {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.RNA-Seq.S11_L008_R1.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R1_001.fastq.gz 4273765686 FASTQ S11_L008_R1 submitted_unaligned CPTAC3 ed67a97a-0690-4901-88ca-439c5ab6bc7d 2dcbef9ef6b214ef733d274aee615875 {"aliquot_tag": "ALQ_7be1d06d", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.RNA-Seq.S11_L008_R2.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R2_001.fastq.gz 4672445899 FASTQ S11_L008_R2 submitted_unaligned CPTAC3 888acb67-c9e7-40ee-a6c6-3c0e18a7ffc1 f3df04c2832debcf79bbc2e034728259 {"aliquot_tag": "ALQ_7be1d06d", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.RNA-Seq.S31_L008_R1.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R1_001.fastq.gz 3226531265 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 b670d3bf-a39b-4b8e-9a5e-232772b9939f 9caed3388abe7eeadb77a123af71c7f3 {"aliquot_tag": "ALQ_bb3e0e5f", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00498.RNA-Seq.S31_L008_R2.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R2_001.fastq.gz 3494017219 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 02d65ea6-0dbe-4412-902c-b2fd19487593 f8f374cca7375b087b2c62648fff3b03 {"aliquot_tag": "ALQ_bb3e0e5f", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00498.RNA-Seq.transcriptome.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.transcriptome.gdc_realn.bam 8855972111 BAM transcriptome harmonized CPTAC3 447a1bfb-4735-4b85-a03e-4f123173b287 2c6615197316e22ceede1e0772120ce3 {"aliquot_tag": "ALQ_bb3e0e5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00498.RNA-Seq.transcriptome.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.transcriptome.gdc_realn.bam 10255674919 BAM transcriptome harmonized CPTAC3 b74b7baa-9a18-448d-92f8-08f712388fb1 eff021795000c4f11047ed1807c64f18 {"aliquot_tag": "ALQ_7be1d06d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.WGS.N C3N-00498 HNSCC WGS blood_normal CPT0013090002 CPT0013090002.WholeGenome.RP-1303.bam 66029020313 BAM submitted_aligned CPTAC3 f32c041e-8ccc-4192-ac65-55c8fc935ad7 3904a3f976c43652a48f83856deab604 {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00498.WGS.N.hg38 C3N-00498 HNSCC WGS blood_normal CPT0013090002 ae19af2b-2847-48a7-bbd8-413c8b0d3720_gdc_realn.bam 98249186693 BAM harmonized CPTAC3 ba88d55b-5908-4a0a-8e8b-72e4af321ed1 7e7b0395a28ff2ae566eef1806adf79f {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00498.WGS.T C3N-00498 HNSCC WGS tumor CPT0013000010 CPT0013000010.WholeGenome.RP-1303.bam 71122188674 BAM submitted_aligned CPTAC3 1400255c-3c11-4a0c-9b1f-d2682803f441 2f4dff58906cb772f6cb6c2ac672eb4d {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.WGS.T.hg38 C3N-00498 HNSCC WGS tumor CPT0013000010 2d6748ff-846e-4f6c-9278-22f421c7a32a_gdc_realn.bam 105046099295 BAM harmonized CPTAC3 07e10191-4dd1-4a4f-be4a-89e7bb7ef9a4 272601b7095ccf2585caff1e51e35db4 {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.WXS.N C3N-00498 HNSCC WXS blood_normal CPT0013090002 CPT0013090002.WholeExome.RP-1303.bam 26740514587 BAM submitted_aligned CPTAC3 847bfaf3-0dfc-4eb8-985f-7471136866ef ad9cd58860f6aff3580c5fc2a8dbf56b {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00498.WXS.N.hg38 C3N-00498 HNSCC WXS blood_normal CPT0013090002 ae19af2b-2847-48a7-bbd8-413c8b0d3720_gdc_realn.bam 36792148788 BAM harmonized CPTAC3 f2f1e455-e8d9-4c87-bbdd-825a120412f8 7914735344e0115029d1800a1576620b {"aliquot_tag": "ALQ_69b4693", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00498.WXS.T C3N-00498 HNSCC WXS tumor CPT0013000010 CPT0013000010.WholeExome.RP-1303.bam 28240147139 BAM submitted_aligned CPTAC3 5901772f-3414-4e8a-a8a7-075a6a0189ac 8c0ab16be651721dcb581e1afc57924e {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00498.WXS.T.hg38 C3N-00498 HNSCC WXS tumor CPT0013000010 2d6748ff-846e-4f6c-9278-22f421c7a32a_gdc_realn.bam 38213325801 BAM harmonized CPTAC3 151bbb75-0700-4d1c-9896-a85f566a0e7b 047ad3a7edec1b37d1dfdd8259f3bb96 {"aliquot_tag": "ALQ_fc9e748f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.ADD_4da693fd.MethArray.Green.T C3N-00511 PDA Methylation_Array tumor CPT0078250006 202184900110_R05C01_Grn.idat 13676256 IDAT Green NA CPTAC3 d6853bca-addf-4e34-9c10-d26289dcc650 0c08ce0c53926f04bd46062f4f9f5701 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.ADD_4da693fd.MethArray.Red.T C3N-00511 PDA Methylation_Array tumor CPT0078250006 202184900110_R05C01_Red.idat 13676256 IDAT Red NA CPTAC3 fcd2a37b-7f2f-41be-b0b5-d0aebc47f033 33bdd4d67d8ade2dc559cf7b2aff1d05 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.ADD_4da693fd.WGS.T C3N-00511 PDA WGS tumor CPT0078250006 CPT0078250006.WholeGenome.RP-1303.bam 73611088600 BAM submitted_aligned CPTAC3 a80759e5-1f46-4e3e-a064-4c702257ef3a f0a554d02a0c2745029df3fb52a99e07 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.ADD_4da693fd.WGS.T.hg38 C3N-00511 PDA WGS tumor CPT0078250006 d1efcc85-6baa-4e76-800d-81badfebf50a_gdc_realn.bam 107916579496 BAM harmonized CPTAC3 5ea6b3b4-0156-4543-b9cb-fdceec187df6 0d38dc53e806c6c42e50ad4d5f80ac63 {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.ADD_4da693fd.WXS.T C3N-00511 PDA WXS tumor CPT0078250006 CPT0078250006.WholeExome.RP-1303.bam 30127805460 BAM submitted_aligned CPTAC3 4d5b010b-21ab-4b5f-b279-0b32070fb1c2 87a42e1ace0251ec10ed290f71357e8f {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.ADD_4da693fd.WXS.T.hg38 C3N-00511 PDA WXS tumor CPT0078250006 d1efcc85-6baa-4e76-800d-81badfebf50a_gdc_realn.bam 41645453083 BAM harmonized CPTAC3 23eadf0b-0740-49b1-81c9-a63acc6f67d8 7f6b45cfb2bd7d5278e2aaa00bcb75cb {"aliquot_tag": "ADD_4da693fd", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.miRNA-Seq.S44_L007_R1.T C3N-00511 PDA miRNA-Seq tumor CPT0078250009 181012_UNC32-K00270_0124_AH223CBBXY_GGTAGC_S44_L007_R1_001.unaln.bam 217571620 BAM S44_L007_R1 submitted_unaligned CPTAC3 e4bec376-0b91-45a4-91a0-84922554953b 37d3f83ff703ddd66c40b6db4c605da8 {"aliquot_tag": "ALQ_dd198e6c", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.miRNA-Seq.T.hg38 C3N-00511 PDA miRNA-Seq tumor CPT0078250009 88ca37fc-eb00-4de2-ac83-fc2c4a9149fd_mirnaseq_gdc_realn.bam 241752415 BAM harmonized CPTAC3 29b35319-424f-4568-93aa-84d9384ff37f 9007d4e163f39ed5a7676a221a8d6882 {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.RNA-Seq.chimeric.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.chimeric.gdc_realn.bam 69530481 BAM chimeric harmonized CPTAC3 e18d131e-9601-481d-9901-144abdb9d36b 2c878cbca7582f34fc1ba7e757a63add {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.genomic.gdc_realn.bam 8063179150 BAM genomic harmonized CPTAC3 012d4018-7beb-46c6-be39-395c8f009559 62010dd79da8b26c4d3d4fbd38b93234 {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.RNA-Seq.S1_L007_R1.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3618545492 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 7981a9cf-0215-4cf5-99d0-de2f99fb25cc b393b2210c0d4b8857185d584c2dcd14 {"aliquot_tag": "ALQ_dd198e6c", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.RNA-Seq.S1_L007_R2.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3905021077 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 e66fe6f2-9722-41a3-baf7-dd9c097a090a 5b30c795eb3e7d5a7ff7583dfe9549e2 {"aliquot_tag": "ALQ_dd198e6c", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.RNA-Seq.transcriptome.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.transcriptome.gdc_realn.bam 9231772618 BAM transcriptome harmonized CPTAC3 3a60feed-8655-41f1-bc95-3b573dba85ff 7e17ec6af665d33e930cba700fd07958 {"aliquot_tag": "ALQ_dd198e6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.WGS.N C3N-00511 PDA WGS blood_normal CPT0078310002 CPT0078310002.WholeGenome.RP-1303.bam 65114654545 BAM submitted_aligned CPTAC3 b956585d-ab87-4cd3-8771-d230d9c4a9e8 b1b8417882a827c8aef44ccd5641664e {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00511.WGS.N.hg38 C3N-00511 PDA WGS blood_normal CPT0078310002 4769f91e-a396-48e9-a979-2ea2ad5b550c_gdc_realn.bam 95883555582 BAM harmonized CPTAC3 889fd6db-ed7b-4aa8-bc73-baa7ee9db36f 877e7033499e8da2133c820dfc88bd05 {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00511.WXS.N C3N-00511 PDA WXS blood_normal CPT0078310002 CPT0078310002.WholeExome.RP-1303.bam 23878663203 BAM submitted_aligned CPTAC3 f56ab256-bfe4-404a-8706-b6f1f506d848 c8a485eaa90d7230ef4cb6018062450d {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00511.WXS.N.hg38 C3N-00511 PDA WXS blood_normal CPT0078310002 4769f91e-a396-48e9-a979-2ea2ad5b550c_gdc_realn.bam 32313176425 BAM harmonized CPTAC3 f11b65a5-4715-4fc2-979e-17d898de274c c01b39d3ac550262226ee2d8bcfdd355 {"aliquot_tag": "ALQ_74172281", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00511.WXS.T C3N-00511 PDA WXS tumor CPT0078250006_1 CPT0078250006_1.WholeExome.RP-1303.bam 56251339959 BAM submitted_aligned CPTAC3 620a440e-14e3-41f3-b487-ca5691bce30a 1bf1e695ca947fc7c4e026ed6aae59a8 {"aliquot_tag": "ALQ_e53043f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00511.WXS.T.hg38 C3N-00511 PDA WXS tumor CPT0078250006_1 8d21aeea-4893-4c72-ae6f-cc6d35624519_wxs_gdc_realn.bam 77980014328 BAM harmonized CPTAC3 0f5cf6e2-cb7a-4823-af4a-ecbcdbef768d bc3968265fd004c6c5e236bf897d4c40 {"aliquot_tag": "ALQ_e53043f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.MethArray.Green.A C3N-00512 PDA Methylation_Array tissue_normal CPT0078180006 203561450048_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3d2ebfac-8a81-4ac0-b045-64b9c45575d6 c0aa7c36b0e6ba962e91394831005134 {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00512.MethArray.Green.T C3N-00512 PDA Methylation_Array tumor CPT0078160007 202184900148_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 c16e4d13-6b0a-4000-9fe3-522f3a27aa99 54a6316c7b2c8d9327263a85b0632e5e {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.MethArray.Red.A C3N-00512 PDA Methylation_Array tissue_normal CPT0078180006 203561450048_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 c3ab0448-78f6-47d0-88a5-d5431d63be51 b9ed829da94f0e6b628999225cab9378 {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00512.MethArray.Red.T C3N-00512 PDA Methylation_Array tumor CPT0078160007 202184900148_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 7ab6984a-b104-4df3-a7e2-38d48733f336 545ed04b7196cfebc1e1719eaf27b2b0 {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.miRNA-Seq.S43_L007_R1.T C3N-00512 PDA miRNA-Seq tumor CPT0078160010 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L007_R1_001.unaln.bam 240414480 BAM S43_L007_R1 submitted_unaligned CPTAC3 76da2922-5dec-4e3d-97e0-35648713d4ac 9b5fe60d32c307ce4e05ea3ee21ae50c {"aliquot_tag": "ALQ_7cea0ff7", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.miRNA-Seq.T.hg38 C3N-00512 PDA miRNA-Seq tumor CPT0078160010 6ead8a40-477d-49fe-88fa-233ce457e7bc_mirnaseq_gdc_realn.bam 270210259 BAM harmonized CPTAC3 7f6f91ac-0060-48f8-a242-e0ea953334f6 5fa23a2bcce6c4747d12d0695e9317d1 {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.RNA-Seq.chimeric.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.chimeric.gdc_realn.bam 82329490 BAM chimeric harmonized CPTAC3 79377655-347a-41fb-a8f6-86353f338643 d27a7f82818bad052c2af5c4546ee7e4 {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.RNA-Seq.genomic.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.genomic.gdc_realn.bam 11130019810 BAM genomic harmonized CPTAC3 02782ed3-d192-42a9-bb66-affdfe329a9e b0c08ed2c410a6748a0c807e9c4fbe12 {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.RNA-Seq.S2_L007_R1.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4175780551 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 dd562d7c-a718-4244-878a-9d455ef427e8 09c41dd0a9c20fbe7558537624526ef0 {"aliquot_tag": "ALQ_7cea0ff7", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.RNA-Seq.S2_L007_R2.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4512232208 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 252c7281-896e-4e57-acee-a4e3d2c17371 74b57e38d77bcc8ac102b679c18b1f73 {"aliquot_tag": "ALQ_7cea0ff7", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.RNA-Seq.transcriptome.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.transcriptome.gdc_realn.bam 10770391237 BAM transcriptome harmonized CPTAC3 6cb57faa-c17e-45b9-a2d3-c66fc006ac64 3a85453c461c5131c94b37c9969f783d {"aliquot_tag": "ALQ_7cea0ff7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WGS.A C3N-00512 PDA WGS tissue_normal CPT0078180006 CPT0078180006.WholeGenome.RP-1303.bam 58868764711 BAM submitted_aligned CPTAC3 2bed83a4-ae5b-4eec-83bd-f3af48429635 59c0aed05c6826a3534689897f357b14 {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00512.WGS.A.hg38 C3N-00512 PDA WGS tissue_normal CPT0078180006 4c0eab19-fc9a-4c28-a7f1-b75ba0c41127_wgs_gdc_realn.bam 88236657574 BAM harmonized CPTAC3 8a8c7167-a577-4c7b-954b-908da4effb4f 0a911c06aee6e6c59793816d4c7390ba {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00512.WGS.N C3N-00512 PDA WGS blood_normal CPT0078220002 CPT0078220002.WholeGenome.RP-1303.bam 76558062357 BAM submitted_aligned CPTAC3 710e8d7c-666b-485c-b6a0-a178d943d3f4 1e271a3969516a040d03c1bc266528ee {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00512.WGS.N.hg38 C3N-00512 PDA WGS blood_normal CPT0078220002 3f8f91f0-a20d-46af-8982-9c908cdd9813_gdc_realn.bam 113537922672 BAM harmonized CPTAC3 ef84c829-596a-41e6-8af8-546c11bd1b85 6e69c150a761d1a6f64020ee3d873190 {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00512.WGS.T C3N-00512 PDA WGS tumor CPT0078160007_1 CPT0078160007_1.WholeGenome.RP-1303.bam 114809107724 BAM submitted_aligned CPTAC3 93c5005e-e088-4c90-bcc4-bae05178c40d 8e3ab035cbf2cb1750717cc7f183b160 {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WGS.T C3N-00512 PDA WGS tumor CPT0078160007 CPT0078160007.WholeGenome.RP-1303.bam 73525359656 BAM submitted_aligned CPTAC3 edacef3d-565d-4fbc-967c-9a1fdfbe52a7 dd7fac6df2fcb032a6cf38e4d2fcaf5c {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WGS.T.hg38 C3N-00512 PDA WGS tumor CPT0078160007_1 8801d43d-44fd-429b-80b6-d4183e42b10b_wgs_gdc_realn.bam 170651930618 BAM harmonized CPTAC3 056ae090-5976-44f9-8779-dd762af2a679 0fcc3be44d448138294d9451e47d7b29 {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WGS.T.hg38 C3N-00512 PDA WGS tumor CPT0078160007 d6eeb787-9ba5-43b3-9e26-174015bb0a88_gdc_realn.bam 111050376047 BAM harmonized CPTAC3 a7ea1930-731f-45e4-9e2d-62fcea44aa7d a08741bba301cef7dbffe2dad3e6e97d {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WXS.A C3N-00512 PDA WXS tissue_normal CPT0078180006 CPT0078180006.WholeExome.RP-1303.bam 26553304816 BAM submitted_aligned CPTAC3 9115b469-e35d-4a18-b7c1-cfb010bf20ca 0addd4d749c12e0de553da725c46174b {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00512.WXS.A.hg38 C3N-00512 PDA WXS tissue_normal CPT0078180006 4c0eab19-fc9a-4c28-a7f1-b75ba0c41127_wxs_gdc_realn.bam 35609128069 BAM harmonized CPTAC3 e2477bca-d32d-449c-97af-4bfa159b73bc ddade8efcfc0421bb6cc277446739d2e {"aliquot_tag": "ALQ_33a225e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00512.WXS.N C3N-00512 PDA WXS blood_normal CPT0078220002 CPT0078220002.WholeExome.RP-1303.bam 30853776252 BAM submitted_aligned CPTAC3 67d2c8c5-c556-4404-a50e-d4ac64a5d432 a9a1485f333379d1ecc81b39b0f33f54 {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00512.WXS.N.hg38 C3N-00512 PDA WXS blood_normal CPT0078220002 3f8f91f0-a20d-46af-8982-9c908cdd9813_gdc_realn.bam 41923521927 BAM harmonized CPTAC3 6fa8d244-1cb0-4ebb-8539-5adc29c5cc4f e153a314312d38e8c251077afc3c597e {"aliquot_tag": "ALQ_f8eb8bf4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00512.WXS.T C3N-00512 PDA WXS tumor CPT0078160007_1 CPT0078160007_1.WholeExome.RP-1303.bam 56111660376 BAM submitted_aligned CPTAC3 ab6cb158-cacc-478e-ab0e-49dd04978bbe 0c54a3804fc36f571cdfdcb590af720d {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WXS.T C3N-00512 PDA WXS tumor CPT0078160007 CPT0078160007.WholeExome.RP-1303.bam 29855764409 BAM submitted_aligned CPTAC3 99324db0-81f8-46d4-bdcd-bb4ba53c49c8 031cdc32b4313f56de913fff180fe9f1 {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WXS.T.hg38 C3N-00512 PDA WXS tumor CPT0078160007_1 8801d43d-44fd-429b-80b6-d4183e42b10b_wxs_gdc_realn.bam 77295266622 BAM harmonized CPTAC3 c4191cf2-01a5-4956-b060-696defdef03b ca785c1456bb85f63e795123bc79e5fe {"aliquot_tag": "ALQ_5b9534bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00512.WXS.T.hg38 C3N-00512 PDA WXS tumor CPT0078160007 d6eeb787-9ba5-43b3-9e26-174015bb0a88_gdc_realn.bam 41520448945 BAM harmonized CPTAC3 21098a60-ee40-4c8e-a458-65df9be3c628 1d598ae7ae4c8994f931fddb0ffd29d2 {"aliquot_tag": "ALQ_fb95ab15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.MethArray.Green.A C3N-00513 PDA Methylation_Array tissue_normal CPT0077810006 203561450027_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b04069ce-856f-4606-8616-3a92ce4e412c ed21aa49799906190c2ba7db8c353e9e {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00513.MethArray.Green.T C3N-00513 PDA Methylation_Array tumor CPT0077790007 202184990059_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4d2d61c9-4de0-4f02-9a24-32563eada3de 860bec2143d1e2527cf4a7cd1b55e755 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.MethArray.Red.A C3N-00513 PDA Methylation_Array tissue_normal CPT0077810006 203561450027_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 c607d471-bb39-4852-8245-4407216d614e ddb45eeba4917c41887a538a78aa4710 {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00513.MethArray.Red.T C3N-00513 PDA Methylation_Array tumor CPT0077790007 202184990059_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 45b84587-ca30-4f54-bc2f-cd96bebceb9b 4bf2d35fcf27b1b3eaabcc7a880938e4 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.miRNA-Seq.S39_L007_R1.T C3N-00513 PDA miRNA-Seq tumor CPT0077790010 181012_UNC32-K00270_0124_AH223CBBXY_GTCCGC_S39_L007_R1_001.unaln.bam 260368864 BAM S39_L007_R1 submitted_unaligned CPTAC3 98abf75c-c81c-4d9a-bb3b-7a345c5fb37a eb22c84cb29ef9f19b72db5ee7f1064d {"aliquot_tag": "ALQ_deab0bd2", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.miRNA-Seq.T.hg38 C3N-00513 PDA miRNA-Seq tumor CPT0077790010 743ea3ca-3314-48f3-ad3d-226e6ea5a6c9_mirnaseq_gdc_realn.bam 288697793 BAM harmonized CPTAC3 7c28263e-f4cc-4b08-8ed6-f95438427b37 e64f515b82465e56e4bf3dc3d413aa2f {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.RNA-Seq.chimeric.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.chimeric.gdc_realn.bam 67750820 BAM chimeric harmonized CPTAC3 5b27acd3-273b-4c0e-966c-1006e9c3c185 775758473f9fdf931560f301c8427c14 {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.RNA-Seq.genomic.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.genomic.gdc_realn.bam 7724467128 BAM genomic harmonized CPTAC3 d4fd86c6-bf72-47f9-82aa-6e9ca6b958fb 86c644ef917fa52705b99a36d66789c1 {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.RNA-Seq.S5_L008_R1.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3548500935 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 9a816fe4-a1f8-4321-86a2-1a09419b0942 d16f66a264f59cbe4718078c8715cc6d {"aliquot_tag": "ALQ_deab0bd2", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.RNA-Seq.S5_L008_R2.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3930731261 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 37f1f57f-09e3-47d4-a92e-dfdbbfeac63c 7fe622a5d9934b3ed9552d5e90a6aa82 {"aliquot_tag": "ALQ_deab0bd2", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.RNA-Seq.transcriptome.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.transcriptome.gdc_realn.bam 10481938775 BAM transcriptome harmonized CPTAC3 494c03ec-ad63-4248-995b-8dab40d2214e dd32d62359a46ac039b582fad9c529fa {"aliquot_tag": "ALQ_deab0bd2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WGS.A C3N-00513 PDA WGS tissue_normal CPT0077810006 CPT0077810006.WholeGenome.RP-1303.bam 63345650267 BAM submitted_aligned CPTAC3 2354c360-cf25-47bf-86a9-0758742796d9 19f3fd6efeef02d4fb2e0f3fdfd9843d {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00513.WGS.A.hg38 C3N-00513 PDA WGS tissue_normal CPT0077810006 e26a9e7f-9f44-4c9f-9253-52a84df141f0_wgs_gdc_realn.bam 92091237374 BAM harmonized CPTAC3 af2c7cec-604c-41e9-8b9b-253021002ddb dc6af1f74ea5c9a8247babd7efdbcfd2 {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00513.WGS.N C3N-00513 PDA WGS blood_normal CPT0077850001 CPT0077850001.WholeGenome.RP-1303.bam 65506961945 BAM submitted_aligned CPTAC3 454ef3d9-c56b-44bf-be72-018d449f0601 dbbd97701b49439c58ddb79a08accd16 {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00513.WGS.N.hg38 C3N-00513 PDA WGS blood_normal CPT0077850001 e744d6af-13fc-4c98-8c34-4c06bb722546_gdc_realn.bam 101414768513 BAM harmonized CPTAC3 3f202aa4-99de-49eb-b083-91a6dcb3aadd d0f04eb89ecef35c72d1f37ae3bd79a7 {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00513.WGS.T C3N-00513 PDA WGS tumor CPT0077790007_1 CPT0077790007_1.WholeGenome.RP-1303.bam 132748494516 BAM submitted_aligned CPTAC3 3936a73f-ac48-436c-add1-1086761acc58 f84a652dc773b29b0915f529cb788cc3 {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WGS.T C3N-00513 PDA WGS tumor CPT0077790007 CPT0077790007.WholeGenome.RP-1303.bam 69388115972 BAM submitted_aligned CPTAC3 599049da-3f8b-4d38-a857-2a4c0b5b4e18 4dd0c0673855a51d6143de4de1cf2288 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WGS.T.hg38 C3N-00513 PDA WGS tumor CPT0077790007_1 b3fbb7d8-fc1c-4b3f-a07f-8081864a2d42_wgs_gdc_realn.bam 196666522741 BAM harmonized CPTAC3 f70a64ba-3efa-493b-a13b-a48a72fdf213 67f12e4b87e19273a8fbf05f9188e198 {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WGS.T.hg38 C3N-00513 PDA WGS tumor CPT0077790007 9ce8624c-05b3-4d49-8eb4-c3e101e9d229_gdc_realn.bam 104401046994 BAM harmonized CPTAC3 3126f682-9cf8-4320-9340-bc57f2d9bd1c a5da016f09c994a6f1c304f9e2424763 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WXS.A C3N-00513 PDA WXS tissue_normal CPT0077810006 CPT0077810006.WholeExome.RP-1303.bam 36374953017 BAM submitted_aligned CPTAC3 f3b84660-f168-44d4-bf0d-c424670969c4 868cf78bfddc3bdc6ab72165586a4b34 {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00513.WXS.A.hg38 C3N-00513 PDA WXS tissue_normal CPT0077810006 e26a9e7f-9f44-4c9f-9253-52a84df141f0_wxs_gdc_realn.bam 50748479096 BAM harmonized CPTAC3 5676717e-77e6-4e31-ba0f-517571efc356 18150f07b6aad6fbb13120fb967409ba {"aliquot_tag": "ALQ_eff566b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00513.WXS.N C3N-00513 PDA WXS blood_normal CPT0077850001 CPT0077850001.WholeExome.RP-1303.bam 35892403381 BAM submitted_aligned CPTAC3 6a43dee6-6240-48ac-aef9-bcbd7973ada9 b12fa6c39b6a10851b6a780df706bb21 {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00513.WXS.N.hg38 C3N-00513 PDA WXS blood_normal CPT0077850001 e744d6af-13fc-4c98-8c34-4c06bb722546_gdc_realn.bam 48719648931 BAM harmonized CPTAC3 aad6f446-e0ad-4055-978c-24258ed8f934 f4e8b600039c3955d068c9855ff627ef {"aliquot_tag": "ALQ_841155d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00513.WXS.T C3N-00513 PDA WXS tumor CPT0077790007_1 CPT0077790007_1.WholeExome.RP-1303.bam 57513263524 BAM submitted_aligned CPTAC3 458616ba-ec09-40ce-b550-f6996f5d7089 0f8af781e11bfe5cace9a8220a2ebfda {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WXS.T C3N-00513 PDA WXS tumor CPT0077790007 CPT0077790007.WholeExome.RP-1303.bam 31742668967 BAM submitted_aligned CPTAC3 7b702dd2-b8a4-4e84-931c-6c1255a32d40 58397fda100e1194263113bc3beef901 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WXS.T.hg38 C3N-00513 PDA WXS tumor CPT0077790007_1 b3fbb7d8-fc1c-4b3f-a07f-8081864a2d42_wxs_gdc_realn.bam 79078031029 BAM harmonized CPTAC3 c044d978-2f60-4ab0-82e8-4581e04018c9 b0252a8a2935d0a025ae473cb32c5ded {"aliquot_tag": "ALQ_b40b8200", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00513.WXS.T.hg38 C3N-00513 PDA WXS tumor CPT0077790007 9ce8624c-05b3-4d49-8eb4-c3e101e9d229_gdc_realn.bam 44023340629 BAM harmonized CPTAC3 e8203358-e359-412b-883f-ccb492a9b37b 61e3d65c797c22c4f6aaeb319bee0558 {"aliquot_tag": "ALQ_59d4af30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.MethArray.Green.A C3N-00514 PDA Methylation_Array tissue_normal CPT0077950006 203561620085_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4fec677d-03c3-4316-a131-ec9669702111 cd60752391f3bd8793dbeb26bca85ebc {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00514.MethArray.Green.T C3N-00514 PDA Methylation_Array tumor CPT0077930007 202184900110_R06C01_Grn.idat 13676256 IDAT Green NA CPTAC3 2d8a2af9-591b-455f-b9de-0c03ecd7d692 ba351a4cc614e5b52e783b82486458ae {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.MethArray.Red.A C3N-00514 PDA Methylation_Array tissue_normal CPT0077950006 203561620085_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 5dfbc9d7-d70b-4d63-88f3-545d89a5d562 995975c1d3fa025037bce98c29a2623b {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00514.MethArray.Red.T C3N-00514 PDA Methylation_Array tumor CPT0077930007 202184900110_R06C01_Red.idat 13676256 IDAT Red NA CPTAC3 37c2b189-23dc-4423-ac3a-8ef714d5a7a2 78fcf4bda128ce1b21903845066e7188 {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.miRNA-Seq.S40_L007_R1.T C3N-00514 PDA miRNA-Seq tumor CPT0077930010 181012_UNC32-K00270_0124_AH223CBBXY_GTGGCC_S40_L007_R1_001.unaln.bam 245856655 BAM S40_L007_R1 submitted_unaligned CPTAC3 36f44b21-993f-4788-914d-55036b803f16 f2ebe2d411e62489f5b8783355716e51 {"aliquot_tag": "ALQ_ae117203", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.miRNA-Seq.T.hg38 C3N-00514 PDA miRNA-Seq tumor CPT0077930010 2de9af35-d95f-4b71-be2d-39a4472bb5e7_mirnaseq_gdc_realn.bam 270692019 BAM harmonized CPTAC3 7ef851bb-45b5-4252-93e8-490b0d882c93 eb7ca863bb1281dd885066c551b05ff6 {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.RNA-Seq.chimeric.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.chimeric.gdc_realn.bam 114439147 BAM chimeric harmonized CPTAC3 ffb29185-6f08-4f12-b58e-51774a20acfb c97a99a6fb9889ed656dc79142744a09 {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.RNA-Seq.genomic.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.genomic.gdc_realn.bam 8488387689 BAM genomic harmonized CPTAC3 6eda5a5f-bb84-4899-9970-a2c339d7b834 6721266734ef99e2a623e9570d50fa87 {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.RNA-Seq.S8_L008_R1.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4160549605 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 df3495d5-2f0d-4526-bf38-dfebb44761e1 87630c0349e8ea4b3fac38b084ce31a7 {"aliquot_tag": "ALQ_ae117203", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.RNA-Seq.S8_L008_R2.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4536583147 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 85ffbcee-b637-47c6-9537-651279b1acc0 f965ef6f109faa46f9fc56fc4b311643 {"aliquot_tag": "ALQ_ae117203", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.RNA-Seq.transcriptome.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.transcriptome.gdc_realn.bam 11622572283 BAM transcriptome harmonized CPTAC3 1d0303a7-131a-4bd9-8e2b-53f4bddf9133 e3dc2ae64044d6a7e0e2e9ba63543e2f {"aliquot_tag": "ALQ_ae117203", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WGS.A C3N-00514 PDA WGS tissue_normal CPT0077950006 CPT0077950006.WholeGenome.RP-1303.bam 55058915137 BAM submitted_aligned CPTAC3 2645d72d-2386-4de4-8b49-f98f305885e2 d1f62eb871ea0de66cc0085b57aff744 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00514.WGS.A.hg38 C3N-00514 PDA WGS tissue_normal CPT0077950006 08d75710-044f-4ac0-af82-e0fcbae50aa3_wgs_gdc_realn.bam 80072088272 BAM harmonized CPTAC3 77392c85-8724-4890-800b-3e71210b9483 c6ea16e22f07356bd4b03f9f033120c1 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00514.WGS.N C3N-00514 PDA WGS blood_normal CPT0077990002 CPT0077990002.WholeGenome.RP-1303.bam 81707458862 BAM submitted_aligned CPTAC3 789b3df5-2bae-4b13-ae69-db4845535ee8 19bc4bfe7a9efd5185f0322e95478f0d {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00514.WGS.N.hg38 C3N-00514 PDA WGS blood_normal CPT0077990002 eef16b63-5ce4-4ee8-89b9-d0992a129bbf_gdc_realn.bam 122204660528 BAM harmonized CPTAC3 13919a82-8173-41b7-8a26-4a43f36b646b 7e3ed20dd621cf7304cc49bc5b640319 {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00514.WGS.T C3N-00514 PDA WGS tumor CPT0077930007_1 CPT0077930007_1.WholeGenome.RP-1303.bam 125948398285 BAM submitted_aligned CPTAC3 7e989e2b-db14-4170-96db-f6e1f8b696cc beb23bfa8635c15b16002c20e495b80a {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WGS.T C3N-00514 PDA WGS tumor CPT0077930007 CPT0077930007.WholeGenome.RP-1303.bam 68575297613 BAM submitted_aligned CPTAC3 80bc9454-e4e0-4382-b890-a06769d00b9b 1855ec6a86f9da30045cdca95d06abee {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WGS.T.hg38 C3N-00514 PDA WGS tumor CPT0077930007_1 20b71c93-a724-4d9a-8b99-2d86c1af4005_wgs_gdc_realn.bam 184874591762 BAM harmonized CPTAC3 a04f0f9e-49e2-4820-8a91-e33fc101b07e 4879819bbabf0b800998835775f9c4b1 {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WGS.T.hg38 C3N-00514 PDA WGS tumor CPT0077930007 3e109583-a3ce-4b0b-8b85-a92d038457f1_gdc_realn.bam 102490694219 BAM harmonized CPTAC3 7c90efc1-7337-4dc5-b6c4-e7193e9676c7 7f54aa341b158b65b58cae54f8fc22fe {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WXS.A C3N-00514 PDA WXS tissue_normal CPT0077950006 CPT0077950006.WholeExome.RP-1303.bam 27799007459 BAM submitted_aligned CPTAC3 93783739-ab71-444d-93a0-24f02308c4a4 2f1dfac8f7e608f2d2a206d8df6529f0 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00514.WXS.A.hg38 C3N-00514 PDA WXS tissue_normal CPT0077950006 08d75710-044f-4ac0-af82-e0fcbae50aa3_wxs_gdc_realn.bam 37647689880 BAM harmonized CPTAC3 00ae3f34-f88d-4148-b8de-70b012c62bab 84dca2884f8890632d4ed33a4c13ef42 {"aliquot_tag": "ALQ_d12913d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00514.WXS.N C3N-00514 PDA WXS blood_normal CPT0077990002 CPT0077990002.WholeExome.RP-1303.bam 32492200035 BAM submitted_aligned CPTAC3 75af72dc-ea7f-4cfb-82c7-d35d9105c013 a71a53384fa072a2f9b525ad8e81c8c7 {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00514.WXS.N.hg38 C3N-00514 PDA WXS blood_normal CPT0077990002 eef16b63-5ce4-4ee8-89b9-d0992a129bbf_gdc_realn.bam 43589827183 BAM harmonized CPTAC3 2752a15a-c83f-4cb5-bc30-950425577243 034a8ef465528f398f3b1d029762e2f4 {"aliquot_tag": "ALQ_13b43acf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00514.WXS.T C3N-00514 PDA WXS tumor CPT0077930007_1 CPT0077930007_1.WholeExome.RP-1303.bam 75675938375 BAM submitted_aligned CPTAC3 b5d9d686-d524-40b1-afcb-23fe4bf934c8 9c3f675f6d5c72f8072e0846767c5768 {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WXS.T C3N-00514 PDA WXS tumor CPT0077930007 CPT0077930007.WholeExome.RP-1303.bam 39374320935 BAM submitted_aligned CPTAC3 b4f4b2e0-0800-4dca-a8c9-5ee042a2d5f2 c9a9693b22254f0466e7fa519bc5dced {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WXS.T.hg38 C3N-00514 PDA WXS tumor CPT0077930007_1 20b71c93-a724-4d9a-8b99-2d86c1af4005_wxs_gdc_realn.bam 103274223036 BAM harmonized CPTAC3 88f44548-0551-494f-944b-0db95a5ced62 2153e0285726c1b0861b491200677d3e {"aliquot_tag": "ALQ_5f1cf7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00514.WXS.T.hg38 C3N-00514 PDA WXS tumor CPT0077930007 3e109583-a3ce-4b0b-8b85-a92d038457f1_gdc_realn.bam 54123932174 BAM harmonized CPTAC3 8a3710ed-b54c-405e-91b3-cf8f299b0199 a63ed41eee6184906d6f346757a67bd3 {"aliquot_tag": "ALQ_296ed6e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.MethArray.Green.T C3N-00516 PDA Methylation_Array tumor CPT0078090007 202176290116_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d437fc1e-6a14-4c79-a477-7fa2ababac79 dd4e9bb8b5d490c45623d2e93bd15a3c {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.MethArray.Red.T C3N-00516 PDA Methylation_Array tumor CPT0078090007 202176290116_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 2290a280-e458-437a-9a5b-1b9fdb89bf54 5e142182133ad95b3b5b6072705cce6f {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.miRNA-Seq.S42_L007_R1.T C3N-00516 PDA miRNA-Seq tumor CPT0078090010 181012_UNC32-K00270_0124_AH223CBBXY_CGTACG_S42_L007_R1_001.unaln.bam 241523360 BAM S42_L007_R1 submitted_unaligned CPTAC3 f53e9269-bd23-4eb1-9125-f0b9578d753d 639c8bafb5f7193869a412d1c0fbdaad {"aliquot_tag": "ALQ_35e64b83", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.miRNA-Seq.T.hg38 C3N-00516 PDA miRNA-Seq tumor CPT0078090010 421d7885-90fc-447d-92f9-5c8278ab5a7d_mirnaseq_gdc_realn.bam 265110152 BAM harmonized CPTAC3 b1ffcf57-3bff-4bca-b875-6de377cafe1a 7b14afd773f66d2865af0f85f4f4fef4 {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.RNA-Seq.chimeric.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.chimeric.gdc_realn.bam 55459964 BAM chimeric harmonized CPTAC3 20ee604d-de3d-420f-9384-72cdf43f6144 93f14c3b965e4873f648c11126b7f57b {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.RNA-Seq.genomic.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.genomic.gdc_realn.bam 8833396423 BAM genomic harmonized CPTAC3 6245f251-1909-44c7-920a-22675fbf65c9 de4a008a06cbf820b49f31d989a0a20d {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.RNA-Seq.S3_L007_R1.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R1_001.fastq.gz 4149193620 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 35098502-bf68-4845-88f6-4feee3e88f25 0391b6120bf27798285a396c528f3ea9 {"aliquot_tag": "ALQ_35e64b83", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.RNA-Seq.S3_L007_R2.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R2_001.fastq.gz 4064678475 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 9bf5bde9-e5b7-45e4-a538-be22e9514f38 8fafa6f92b5979c18d0cd02f4d53d567 {"aliquot_tag": "ALQ_35e64b83", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.RNA-Seq.transcriptome.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.transcriptome.gdc_realn.bam 10873307472 BAM transcriptome harmonized CPTAC3 0fe470b8-9abf-425f-8cdb-784a40039d1f 4c0c465f8cd0434aaf7189c961a1e98f {"aliquot_tag": "ALQ_35e64b83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WGS.N C3N-00516 PDA WGS blood_normal CPT0078150002 CPT0078150002.WholeGenome.RP-1303.bam 80982324338 BAM submitted_aligned CPTAC3 5560b2eb-9839-4007-97c3-0e4079748bfa 30f4ba659d6570711c0a8905019cd04e {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00516.WGS.N.hg38 C3N-00516 PDA WGS blood_normal CPT0078150002 2b86b6b9-96cf-4382-99a0-089499736b97_gdc_realn.bam 121111546034 BAM harmonized CPTAC3 5a8fe06d-fc16-4c58-bc99-b845d0d79683 9bd47a844deb8b1e5fdd974fdbb85050 {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00516.WGS.T C3N-00516 PDA WGS tumor CPT0078090007_1 CPT0078090007_1.WholeGenome.RP-1303.bam 142950976103 BAM submitted_aligned CPTAC3 e701c076-3ab6-41dc-818d-f8ab88abf5a8 b9404c71dea95dcd1498b6cb01ad24a1 {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WGS.T C3N-00516 PDA WGS tumor CPT0078090007 CPT0078090007.WholeGenome.RP-1303.bam 74969029268 BAM submitted_aligned CPTAC3 5648d662-ca6a-4dff-a5c2-21f7347151a1 35c9f142d82f035b322cdf917e45fc1b {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WGS.T.hg38 C3N-00516 PDA WGS tumor CPT0078090007 16ceed06-5bda-4064-a978-682cac3e8a85_gdc_realn.bam 112126056087 BAM harmonized CPTAC3 40656472-cbfa-4c7a-8df0-62634577c104 a8749a3c3092f1effc2b80366b50144c {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WGS.T.hg38 C3N-00516 PDA WGS tumor CPT0078090007_1 6ec43779-ec6c-4cc7-8e04-22f29a8ae7d4_wgs_gdc_realn.bam 210978769505 BAM harmonized CPTAC3 a8d5f4c6-cd6d-45bb-bc96-f1d63d9d29b4 11dac54f2319e97984691cebd8b4a011 {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WXS.N C3N-00516 PDA WXS blood_normal CPT0078150002 CPT0078150002.WholeExome.RP-1303.bam 34655029916 BAM submitted_aligned CPTAC3 41f3c605-8c76-4fa1-aa7a-ed81aa1b62b6 6eef167be98a148446b59d81592228b9 {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00516.WXS.N.hg38 C3N-00516 PDA WXS blood_normal CPT0078150002 2b86b6b9-96cf-4382-99a0-089499736b97_gdc_realn.bam 47083360469 BAM harmonized CPTAC3 91ad8111-5ddf-432a-b60d-9333497c495c 469d6472cf088b887302158fcc7f59e3 {"aliquot_tag": "ALQ_cc5f254a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00516.WXS.T C3N-00516 PDA WXS tumor CPT0078090007_1 CPT0078090007_1.WholeExome.RP-1303.bam 54439544902 BAM submitted_aligned CPTAC3 30d518db-ee3e-4fa3-b709-7b3aba53c236 b9206b8eeeab966db824bde1745cf922 {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WXS.T C3N-00516 PDA WXS tumor CPT0078090007 CPT0078090007.WholeExome.RP-1303.bam 30182199966 BAM submitted_aligned CPTAC3 cfe865e0-da6e-41e5-bb4b-9637acedb796 300f8b463b3ec0320a40b5e1761d7fa9 {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WXS.T.hg38 C3N-00516 PDA WXS tumor CPT0078090007 16ceed06-5bda-4064-a978-682cac3e8a85_gdc_realn.bam 41698747445 BAM harmonized CPTAC3 2192d9aa-a261-4e48-a913-d7c05f05f1c3 ff95cbe66a526b6caa61aa236b9e0ba4 {"aliquot_tag": "ALQ_b299ef61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00516.WXS.T.hg38 C3N-00516 PDA WXS tumor CPT0078090007_1 6ec43779-ec6c-4cc7-8e04-22f29a8ae7d4_wxs_gdc_realn.bam 74954362269 BAM harmonized CPTAC3 7bcb4446-25fb-48f5-9080-008986cd0541 47c2e98dba75488c73da5767e1651cdc {"aliquot_tag": "ALQ_617744c8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.MethArray.Green.A C3N-00517 PDA Methylation_Array tissue_normal CPT0093880006 203561620043_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 f465b113-d977-45f2-8de7-2b2ad2e50f75 f5e34a825dc36ad65617104bd82a3fdb {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.MethArray.Green.T C3N-00517 PDA Methylation_Array tumor CPT0093860009 202234360009_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f202313a-bbeb-49cc-8fcb-82313c3df5ea c531b88b591e1c3c2324c64d88e6e25b {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.MethArray.Red.A C3N-00517 PDA Methylation_Array tissue_normal CPT0093880006 203561620043_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 4070fd0c-d73e-4742-97d9-3b350738e75b c4bcbb16a136d86a96ff8b20dd58cc21 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.MethArray.Red.T C3N-00517 PDA Methylation_Array tumor CPT0093860009 202234360009_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 a1a4ce85-35bd-407f-8b45-047dd2d9a67e fa14041b6f478abf44dd39a2f6954dcb {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.miRNA-Seq.A.hg38 C3N-00517 PDA miRNA-Seq tissue_normal CPT0093880009 978d28a0-2466-42ae-96b7-795b459030f2_mirnaseq_gdc_realn.bam 272411297 BAM harmonized CPTAC3 49b359f3-969a-4b87-871f-c58d73ccde82 ba0ad5eb1527d4dea9c4f0558215b396 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.miRNA-Seq.S24_L001_R1.A C3N-00517 PDA miRNA-Seq tissue_normal CPT0093880009 181108_UNC31-K00269_0162_AH255GBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 117612279 BAM S24_L001_R1 submitted_unaligned CPTAC3 e156f077-b1c4-45a7-b838-4b94d0b7921d d7df74fa2d669d3c3daf7b89e889cc8f {"aliquot_tag": "ALQ_939f2f73", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.miRNA-Seq.S24_L004_R1.A C3N-00517 PDA miRNA-Seq tissue_normal CPT0093880009 181119_UNC31-K00269_0165_AH27WCBBXY_TCGGCA_S24_L004_R1_001.unaln.bam 129517491 BAM S24_L004_R1 submitted_unaligned CPTAC3 1094ea67-0da9-4835-b5c2-d207e30d8a26 4ed6dbb281b6f6c5066f7bb2f10b3be1 {"aliquot_tag": "ALQ_939f2f73", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.miRNA-Seq.S27_L002_R1.T C3N-00517 PDA miRNA-Seq tumor CPT0093860006 181113_UNC31-K00269_0164_AH23NNBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 192757219 BAM S27_L002_R1 submitted_unaligned CPTAC3 402e58b6-cb7d-4bf1-b24a-fe71582d85d2 fae093ed70e14194856a7272ca075f6f {"aliquot_tag": "ALQ_bc108c83", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.miRNA-Seq.T.hg38 C3N-00517 PDA miRNA-Seq tumor CPT0093860006 b16295b7-fcd5-40e0-b34c-612cc7400014_mirnaseq_gdc_realn.bam 216051604 BAM harmonized CPTAC3 6daedcd3-9ac8-42cb-9adf-fc53291419c0 69f2633b72dfd692c823574a88a329a9 {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.RNA-Seq.chimeric.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.chimeric.gdc_realn.bam 77595538 BAM chimeric harmonized CPTAC3 7e44709a-5a86-492a-96cd-c9eefa66393f dca84a10a3fc0d96ed37a9fd8f922a22 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.RNA-Seq.chimeric.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.chimeric.gdc_realn.bam 29478317 BAM chimeric harmonized CPTAC3 a85dbc7c-c166-4a0b-b1e5-9b2ad8950469 568151fc497e06472e47400b784307e8 {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.RNA-Seq.genomic.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.genomic.gdc_realn.bam 11947885517 BAM genomic harmonized CPTAC3 8f139d30-d0d9-4e5c-84d3-803359644369 28fba244a92a5b5e49eb2fd5f338aea9 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.RNA-Seq.genomic.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.genomic.gdc_realn.bam 9160874747 BAM genomic harmonized CPTAC3 4f3c81cc-0c69-4cd3-bfaf-24f1fed8188e 03d80342653ed850c8131e8f17d42997 {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.RNA-Seq.S3_L008_R1.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R1_001.fastq.gz 5184677841 FASTQ S3_L008_R1 submitted_unaligned CPTAC3 ea90b038-9305-4f23-9741-7b84b8e529fa e2ad6268cb69a2a47ec5e6ca616953fd {"aliquot_tag": "ALQ_939f2f73", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.RNA-Seq.S3_L008_R2.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R2_001.fastq.gz 5537737885 FASTQ S3_L008_R2 submitted_unaligned CPTAC3 20b19fef-3565-4f4e-974c-cfff35111960 1bfd535642ccac9f9d981f0a27cd30bf {"aliquot_tag": "ALQ_939f2f73", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.RNA-Seq.S9_L003_R1.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3971725330 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 6f1e129a-913a-46f8-b3a9-4e9dee4b2a79 b56a96813536d06d363256b98804c6fd {"aliquot_tag": "ALQ_bc108c83", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.RNA-Seq.S9_L003_R2.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4428184357 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 70c40a42-439e-4c57-ad66-313287a12471 c3da0569aea560d54fdd166b31886755 {"aliquot_tag": "ALQ_bc108c83", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.RNA-Seq.transcriptome.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.transcriptome.gdc_realn.bam 14865549083 BAM transcriptome harmonized CPTAC3 43307932-396e-4c51-bbf7-768735c68344 c94eecec6f25ffd84c0eaebcf7078de5 {"aliquot_tag": "ALQ_939f2f73", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.RNA-Seq.transcriptome.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.transcriptome.gdc_realn.bam 11994160186 BAM transcriptome harmonized CPTAC3 e91fef83-7b46-48c5-8c1c-9d2e8f8d19bf 5ed8fcc5ae5135516fe5074d5c2b84ee {"aliquot_tag": "ALQ_bc108c83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.WGS.A C3N-00517 PDA WGS tissue_normal CPT0093880006 CPT0093880006.WholeGenome.RP-1303.bam 53603876211 BAM submitted_aligned CPTAC3 411cda6b-3462-4f81-939b-663c0fdae568 6a1564e98a8cf385e65eaca9b5052374 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.WGS.A.hg38 C3N-00517 PDA WGS tissue_normal CPT0093880006 46e6df78-f117-4074-bafd-5e6a607d0bdd_wgs_gdc_realn.bam 77004060588 BAM harmonized CPTAC3 01068fcf-8b0a-4d29-9cec-5dc04dab7cf2 6ab5cd96a321c8778d611c0b305c30b4 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.WGS.N C3N-00517 PDA WGS blood_normal CPT0093920002 CPT0093920002.WholeGenome.RP-1303.bam 66603024617 BAM submitted_aligned CPTAC3 e64d401f-681a-4b76-a20c-fe942a4e122b 2a7eb37f0054322b664c23dae07ac1b4 {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00517.WGS.N.hg38 C3N-00517 PDA WGS blood_normal CPT0093920002 bf94dd15-9042-4df8-baae-9f21c2b61a55_wgs_gdc_realn.bam 97056120225 BAM harmonized CPTAC3 a10dde40-6bb1-4202-b007-b0b45966aa7d b18abcdcbd8375ea8ab41f7b325683dc {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00517.WGS.T C3N-00517 PDA WGS tumor CPT0093860009 CPT0093860009.WholeGenome.RP-1303.bam 68012002781 BAM submitted_aligned CPTAC3 c6a7420c-641b-484c-a8cc-b0efa45ab688 b668d645d0abbd10d0b69f95780fda4b {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.WGS.T.hg38 C3N-00517 PDA WGS tumor CPT0093860009 55541171-4dc5-41f4-86b4-304106a81874_wgs_gdc_realn.bam 100960715783 BAM harmonized CPTAC3 dd21264d-41c3-4573-a7d8-5a2105527d67 c0f9f761017ad7228f7419911167bc10 {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.WXS.A C3N-00517 PDA WXS tissue_normal CPT0093880006 CPT0093880006.WholeExome.RP-1303.bam 32170384010 BAM submitted_aligned CPTAC3 011b685b-6ce9-4bf6-87b4-29183ba7ed3c 02831bf4253f5b71b112bb5bb2c0ea5b {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.WXS.A.hg38 C3N-00517 PDA WXS tissue_normal CPT0093880006 46e6df78-f117-4074-bafd-5e6a607d0bdd_wxs_gdc_realn.bam 43118203238 BAM harmonized CPTAC3 f5e1cbde-33b4-49b4-b930-01436a55c9fc 347cfa4c81639aa07f27f2f035e9a1c9 {"aliquot_tag": "ALQ_32032e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00517.WXS.N C3N-00517 PDA WXS blood_normal CPT0093920002 CPT0093920002.WholeExome.RP-1303.bam 42783186736 BAM submitted_aligned CPTAC3 cdf866d8-41c5-4bbb-a5f3-a75fdfc45a5a 1931a5bd1bb81e47b5e3789ce1669cdf {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00517.WXS.N.hg38 C3N-00517 PDA WXS blood_normal CPT0093920002 bf94dd15-9042-4df8-baae-9f21c2b61a55_wxs_gdc_realn.bam 59608153667 BAM harmonized CPTAC3 ad83e926-2947-43b9-8bcb-df6f45be2656 ff3a5cd7dc3a2ca28a2ec7f82ed60c3a {"aliquot_tag": "ALQ_85a13dff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00517.WXS.T C3N-00517 PDA WXS tumor CPT0093860009_1 CPT0093860009_1.WholeExome.RP-1303.bam 69874566795 BAM submitted_aligned CPTAC3 3e9908d0-1273-4f76-a673-29eade5f724d ae5ba9ea636f932506a2aa4e97545a16 {"aliquot_tag": "ALQ_d2d8acf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.WXS.T C3N-00517 PDA WXS tumor CPT0093860009 CPT0093860009.WholeExome.RP-1303.bam 50906133783 BAM submitted_aligned CPTAC3 c532fe5e-d0ba-4b95-b563-86ae24254230 6a58ec56287b52f15147816ebc984b6b {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.WXS.T.hg38 C3N-00517 PDA WXS tumor CPT0093860009_1 65258cd6-b5b8-4ea3-98e5-d10ed48965e2_wxs_gdc_realn.bam 94467849061 BAM harmonized CPTAC3 a456ff07-170f-433e-9af3-02fcb188d71f c5b95df266be848d9e5119aa081cc529 {"aliquot_tag": "ALQ_d2d8acf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00517.WXS.T.hg38 C3N-00517 PDA WXS tumor CPT0093860009 55541171-4dc5-41f4-86b4-304106a81874_wxs_gdc_realn.bam 69072332479 BAM harmonized CPTAC3 e9f5a100-7ce5-4587-8c43-caaafaa3bb0a 782af9819af0fda5d33efe48428fa723 {"aliquot_tag": "ALQ_2caf9112", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.ANN_c88ebd86.MethArray.Green.T C3N-00518 PDA Methylation_Array tumor CPT0078000006 202184990013_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3fc70e87-e4b9-4a5e-9c99-40c1b0ce68e0 1719150d77429ed54984c395406481b1 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.ANN_c88ebd86.MethArray.Red.T C3N-00518 PDA Methylation_Array tumor CPT0078000006 202184990013_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 5433d211-cdba-4bc4-8920-3bf116f96ede c94f3ec10eab78c2c5a8207291d0799c {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.ANN_c88ebd86.WGS.T C3N-00518 PDA WGS tumor CPT0078000006 CPT0078000006.WholeGenome.RP-1303.bam 65340221811 BAM submitted_aligned CPTAC3 6fdfcdbe-496b-4989-bc70-7b358cce1c77 f6b9eee0f55a7da1185751330cc82ae2 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.ANN_c88ebd86.WGS.T.hg38 C3N-00518 PDA WGS tumor CPT0078000006 f867efb9-cfd4-43af-a9b0-67283ae15049_gdc_realn.bam 100374622206 BAM harmonized CPTAC3 bc1311c5-ddc4-4c68-b21d-04d3bc213d6a f1783ee78e05757b167e8d6e18ba45b3 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.ANN_c88ebd86.WXS.T C3N-00518 PDA WXS tumor CPT0078000006 CPT0078000006.WholeExome.RP-1303.bam 26085859349 BAM submitted_aligned CPTAC3 73c90d6c-5923-4748-9130-f8916ed900fe c6a413ceb6f2bc3de0cc1084139bf217 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.ANN_c88ebd86.WXS.T.hg38 C3N-00518 PDA WXS tumor CPT0078000006 f867efb9-cfd4-43af-a9b0-67283ae15049_gdc_realn.bam 35951559226 BAM harmonized CPTAC3 25682ca6-5e20-4f25-a282-bd90c78caeb4 29e9bc6fcd162f20b3735eea12842316 {"aliquot_tag": "ANN_c88ebd86", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.MethArray.Green.A C3N-00518 PDA Methylation_Array tissue_normal CPT0078030006 203561620089_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b5319b5a-bf49-49aa-958b-a46a09143b33 c6ea76e0dc029276395d59fb10bec8fe {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.MethArray.Red.A C3N-00518 PDA Methylation_Array tissue_normal CPT0078030006 203561620089_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 e6315c56-e1bc-4b9c-8177-aac92aaa80c7 92f53364f75553cbcfe20f986577fd40 {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.miRNA-Seq.A.hg38 C3N-00518 PDA miRNA-Seq tissue_normal CPT0078030009 5f424fd1-0570-4ee5-bd7a-fdd8530c1fa8_mirnaseq_gdc_realn.bam 335704654 BAM harmonized CPTAC3 82c3f8f3-4c46-4f43-bf20-0239eb2b724a ba930a4354c47be18aab38a402615c5f {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.miRNA-Seq.S13_L001_R1.A C3N-00518 PDA miRNA-Seq tissue_normal CPT0078030009 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 304258636 BAM S13_L001_R1 submitted_unaligned CPTAC3 4a725658-5042-4215-a1e4-9d1b69817b8f 14b4c0a7a0ce7206d2c67463f11c1e66 {"aliquot_tag": "ALQ_1f91dac7", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.miRNA-Seq.S41_L007_R1.T C3N-00518 PDA miRNA-Seq tumor CPT0078000009 181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L007_R1_001.unaln.bam 236317692 BAM S41_L007_R1 submitted_unaligned CPTAC3 c321e0e3-d990-4f65-93df-f2d31536e571 c3a798a33fb0ae6016a4108dadabe626 {"aliquot_tag": "ALQ_5831a017", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.miRNA-Seq.T.hg38 C3N-00518 PDA miRNA-Seq tumor CPT0078000009 e3075695-c9a6-45e8-a6dc-29e3b859e058_mirnaseq_gdc_realn.bam 259725187 BAM harmonized CPTAC3 e9c8747a-ea36-4cf6-a8a3-c1aa75cf4b40 878cedfdbf3db9509231f3dbd4e90a1f {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.RNA-Seq.chimeric.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.chimeric.gdc_realn.bam 114627217 BAM chimeric harmonized CPTAC3 7424fc1b-1274-4142-a8b3-0d15f271344b 016caca6be8a787439cbe53cf7363bad {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.RNA-Seq.chimeric.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.chimeric.gdc_realn.bam 78743077 BAM chimeric harmonized CPTAC3 248f5d5d-fe8e-4c51-98cf-9697a13a6a91 d3a07c0e2469858441ca074d25df2bbc {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.RNA-Seq.genomic.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.genomic.gdc_realn.bam 8444367367 BAM genomic harmonized CPTAC3 306e0789-ae4b-47f5-a374-94d6a18ee079 fa37595c5a1b99969b40ee0be7af7af6 {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.RNA-Seq.genomic.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.genomic.gdc_realn.bam 7289192414 BAM genomic harmonized CPTAC3 ff11beaa-559d-493f-bc91-fdf25384a587 fa9481beafd0c3d31af3fe415efe407b {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.RNA-Seq.S21_L006_R1.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3620007047 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 2ea84b99-adc8-4c50-b4da-227d0bece1b8 4aa15ae81c1bef8d1d57c5268773e7c3 {"aliquot_tag": "ALQ_1f91dac7", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.RNA-Seq.S21_L006_R2.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4114925667 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 323b48ec-2dc0-4123-9d9e-e23ea4446bd6 2eaeef1f15592bdae09104263093f507 {"aliquot_tag": "ALQ_1f91dac7", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.RNA-Seq.S7_L008_R1.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3602260099 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 c69be997-c3ee-4a41-9b70-99adb1544886 c686751bb9111b511b655cdd8f38495d {"aliquot_tag": "ALQ_5831a017", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.RNA-Seq.S7_L008_R2.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4027405041 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 499b9448-5a84-4417-a529-3683630e8bb8 7fac2352a483691a50fadae4d1560e47 {"aliquot_tag": "ALQ_5831a017", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.RNA-Seq.transcriptome.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.transcriptome.gdc_realn.bam 10037405038 BAM transcriptome harmonized CPTAC3 22177eae-11d1-458a-a327-83429e3b94bb 477dd032900c671984a5f4996a52da74 {"aliquot_tag": "ALQ_1f91dac7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.RNA-Seq.transcriptome.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.transcriptome.gdc_realn.bam 10687676518 BAM transcriptome harmonized CPTAC3 92d1ec2b-e6d1-4f6f-a0ee-60887282b28d 5e9762f62a62e5eacabc3a0658c2d136 {"aliquot_tag": "ALQ_5831a017", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.WGS.A C3N-00518 PDA WGS tissue_normal CPT0078030006 CPT0078030006.WholeGenome.RP-1303.bam 60453231033 BAM submitted_aligned CPTAC3 60e1c344-88ba-4f77-a252-51c23f7591f0 d020537b6308dfac9f167791195cb4bc {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.WGS.A.hg38 C3N-00518 PDA WGS tissue_normal CPT0078030006 60b0ba11-f504-4ae3-b94e-244ab396a4db_wgs_gdc_realn.bam 90264460013 BAM harmonized CPTAC3 abdda472-8ba1-4f3d-84fb-635e28812934 1a07e83b8f2b8ef96ddc598f28d4c26d {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.WGS.N C3N-00518 PDA WGS blood_normal CPT0078080002 CPT0078080002.WholeGenome.RP-1303.bam 88738034527 BAM submitted_aligned CPTAC3 1cbecd11-5d2b-4d65-8141-7a80e87485e9 35939088665dc59d10af48815f08d8c7 {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00518.WGS.N.hg38 C3N-00518 PDA WGS blood_normal CPT0078080002 6216796a-b345-4f2d-9dc7-00b5f8c7421f_gdc_realn.bam 134316325766 BAM harmonized CPTAC3 552411a0-e179-49e9-a6d4-805dcc60ac50 8a8bc94b3fb2b6c9c18cfe2773dd5843 {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00518.WGS.T C3N-00518 PDA WGS tumor CPT0078000006_1 CPT0078000006_1.WholeGenome.RP-1303.bam 115252537444 BAM submitted_aligned CPTAC3 2f577b2e-29b4-499b-ae75-5a39ca5c5619 cbd3001a81779b82c7c9c2bf5bb4ed39 {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.WGS.T.hg38 C3N-00518 PDA WGS tumor CPT0078000006_1 1e927381-79c9-48a6-9325-ecd0670ec9ae_wgs_gdc_realn.bam 173194972801 BAM harmonized CPTAC3 270dbe03-6eb7-41ea-b89a-dcaaee2b9b6c 8910fa470ecd959d51a0ef3cb311df8c {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.WXS.A C3N-00518 PDA WXS tissue_normal CPT0078030006 CPT0078030006.WholeExome.RP-1303.bam 29631996940 BAM submitted_aligned CPTAC3 3a2a6c46-032b-435c-b165-c03da571366f f31969e9b9fc177d8d146554a22d1927 {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.WXS.A.hg38 C3N-00518 PDA WXS tissue_normal CPT0078030006 60b0ba11-f504-4ae3-b94e-244ab396a4db_wxs_gdc_realn.bam 39607136205 BAM harmonized CPTAC3 c57bfc41-cd30-4ec5-ad86-2952dac16982 8a22197a76bfe007fcf1af5fc8960c92 {"aliquot_tag": "ALQ_8f2ec756", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00518.WXS.N C3N-00518 PDA WXS blood_normal CPT0078080002 CPT0078080002.WholeExome.RP-1303.bam 33028195704 BAM submitted_aligned CPTAC3 1f8dcdcc-6bb9-4286-b5a9-feb3fc1f7dbe 416882ba550148dc1a776dffb6a223de {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00518.WXS.N.hg38 C3N-00518 PDA WXS blood_normal CPT0078080002 6216796a-b345-4f2d-9dc7-00b5f8c7421f_gdc_realn.bam 44485434620 BAM harmonized CPTAC3 6efb82ce-82d0-4192-93e2-ba51c3fc569f 6c36594e556f0e087a0c5909b27b5945 {"aliquot_tag": "ALQ_ff93325e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00518.WXS.T C3N-00518 PDA WXS tumor CPT0078000006_1 CPT0078000006_1.WholeExome.RP-1303.bam 53864250112 BAM submitted_aligned CPTAC3 1d123fcb-60ae-458a-badc-b3c9f134c5da e99fd47a9c8e9dfc79ae1f271050bc07 {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00518.WXS.T.hg38 C3N-00518 PDA WXS tumor CPT0078000006_1 1e927381-79c9-48a6-9325-ecd0670ec9ae_wxs_gdc_realn.bam 73940106948 BAM harmonized CPTAC3 c3a9d03c-16b7-4f1e-8fe6-04bd1fa6d2c7 f24204cb8b60e9616135874d1411f26f {"aliquot_tag": "ALQ_f52d6b2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.MethArray.Green.T C3N-00519 HNSCC Methylation_Array tumor CPT0013430009 202184900140_R07C01_Grn.idat 13676262 IDAT Green NA CPTAC3 a5e6b201-3b4b-44f8-a4e2-5e1aac5a1ee0 e3027921aec03b3006348236f5049ddd {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.MethArray.Red.T C3N-00519 HNSCC Methylation_Array tumor CPT0013430009 202184900140_R07C01_Red.idat 13676262 IDAT Red NA CPTAC3 c3f978f9-8c08-4b0f-82f8-e9323400604d 6e795f28e84a411e12c09cdb289ca79a {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.miRNA-Seq.A.hg38 C3N-00519 HNSCC miRNA-Seq tissue_normal CPT0013460006 f6ac31fa-56d8-4c8b-a21b-8d7f5e538572_mirnaseq_gdc_realn.bam 271000948 BAM harmonized CPTAC3 e7260181-7cd1-4005-96a9-6e2058b60e02 6d3cdce3dc47b4b0d728f9ec10e2899d {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.miRNA-Seq.S31_L006_R1.A C3N-00519 HNSCC miRNA-Seq tissue_normal CPT0013460006 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L006_R1_001.unaln.bam 244554770 BAM S31_L006_R1 submitted_unaligned CPTAC3 4586ee57-2e75-408b-85d9-8fc2066e2e21 d402bb4f14882671384db3b40da6473f {"aliquot_tag": "ALQ_1837574d", "sample": "S31", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.miRNA-Seq.S39_L002_R1.T C3N-00519 HNSCC miRNA-Seq tumor CPT0013430006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACTCA_S39_L002_R1_001.unaln.bam 225044253 BAM S39_L002_R1 submitted_unaligned CPTAC3 6a100795-b15e-4fcc-b603-bdd01858ebdd 10ef4a09834eccd1845083ce283caa58 {"aliquot_tag": "ALQ_d0d7d83d", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.miRNA-Seq.T.hg38 C3N-00519 HNSCC miRNA-Seq tumor CPT0013430006 26621047-64ee-42cc-bcb4-3c1a24d6a18a_mirnaseq_gdc_realn.bam 247600753 BAM harmonized CPTAC3 30950800-0e23-419c-99eb-33b856bce5ac 61ef48f4376edb5aa2462ce20b63b8b1 {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.RNA-Seq.chimeric.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.chimeric.gdc_realn.bam 51557812 BAM chimeric harmonized CPTAC3 5607e145-e915-42bb-8ffc-f7f0c0eb2819 d8625bbb24518b78398104f868bc068a {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.RNA-Seq.chimeric.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.chimeric.gdc_realn.bam 68323515 BAM chimeric harmonized CPTAC3 b0385c30-095a-4f6c-9829-4e4dedde0eb1 0f907b3c5666cdaa4a595a324748bf84 {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.RNA-Seq.genomic.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.genomic.gdc_realn.bam 9200978632 BAM genomic harmonized CPTAC3 49e3438b-fdc5-4a56-9860-c12181f3c8c9 977a1e2609099f17ada1ed8e6d8b86dc {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.RNA-Seq.genomic.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.genomic.gdc_realn.bam 8624499176 BAM genomic harmonized CPTAC3 5add4e3d-51f1-4b8d-ab87-fb7ca415b0eb 5ea1e24dfedc5f8f77b6a16bf1a578ae {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.RNA-Seq.S1_L006_R1.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R1_001.fastq.gz 3643464970 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 91119f86-7715-448f-a216-86049f310e09 a3c39cf2f33a20e88c884b57bc4f04ba {"aliquot_tag": "ALQ_d0d7d83d", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.RNA-Seq.S1_L006_R2.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R2_001.fastq.gz 3963654056 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 2ba9a60e-eaaf-4990-a898-93a2e89a26e0 497a5f75d83728bc1262d2c2af5daf5b {"aliquot_tag": "ALQ_d0d7d83d", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.RNA-Seq.S21_L006_R1.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3914610227 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 e23083b2-997d-4130-bf75-ec1d9b40c2a8 bafe9572ce8d844ccf4c61deb3527388 {"aliquot_tag": "ALQ_1837574d", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.RNA-Seq.S21_L006_R2.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4340903009 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 5753e09e-61b7-4b19-be07-0f61808de354 caea4f68a7e70d0f82328eea22eb199d {"aliquot_tag": "ALQ_1837574d", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.RNA-Seq.transcriptome.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.transcriptome.gdc_realn.bam 11637410107 BAM transcriptome harmonized CPTAC3 2b22bcbe-9b7a-4f5d-b285-e24b227ccbd0 3b0b0ad425727de59626533a5e0f6c33 {"aliquot_tag": "ALQ_1837574d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.RNA-Seq.transcriptome.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.transcriptome.gdc_realn.bam 10327832799 BAM transcriptome harmonized CPTAC3 f2c11415-494c-4ee2-bcf2-978314639de9 43c19f928dead569cf8595bba0294824 {"aliquot_tag": "ALQ_d0d7d83d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.WGS.A C3N-00519 HNSCC WGS tissue_normal CPT0013460009 CPT0013460009.WholeGenome.RP-1303.bam 68551414250 BAM submitted_aligned CPTAC3 a2f43ae3-3c0e-4168-91ec-b32a98f3ed40 0e6f113ce81a4fe0bd86bf4ceb68f8f9 {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.WGS.A.hg38 C3N-00519 HNSCC WGS tissue_normal CPT0013460009 7dc7bef4-5a1d-4370-869a-acfcd70b05ac_wgs_gdc_realn.bam 99817110532 BAM harmonized CPTAC3 2c77c221-abf2-48fa-9c9b-f15da976a979 15aa8c4e379a0a41e088d46941d3b98c {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.WGS.N C3N-00519 HNSCC WGS blood_normal CPT0013520002 CPT0013520002.WholeGenome.RP-1303.bam 71123514245 BAM submitted_aligned CPTAC3 121b4e1b-598a-4934-924b-f7af5651b132 dbf62e39f0e45549761d6f631f3cee53 {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00519.WGS.N.hg38 C3N-00519 HNSCC WGS blood_normal CPT0013520002 f7713c0e-dc58-4cb2-bb49-f249a4eb451a_gdc_realn.bam 110896567824 BAM harmonized CPTAC3 0b429d57-27e4-4d01-ac24-d30c1642a47b 42ffcf00cde3ebdeabea97977e4a631e {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00519.WGS.T C3N-00519 HNSCC WGS tumor CPT0013430009 CPT0013430009.WholeGenome.RP-1303.bam 73410557448 BAM submitted_aligned CPTAC3 322e41ff-2bfc-4d61-bf01-b2687c20b34c ec280530d4dc304c672320989d3785c3 {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.WGS.T.hg38 C3N-00519 HNSCC WGS tumor CPT0013430009 b2f47f5d-2722-4065-a554-c67264a3b7af_gdc_realn.bam 108491669742 BAM harmonized CPTAC3 d412f948-a64b-4eba-a0a5-0db8fdd6c8ed d2e724eb84eb3b261602f5f540670041 {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.WXS.A C3N-00519 HNSCC WXS tissue_normal CPT0013460009 CPT0013460009.WholeExome.RP-1303.bam 28140966091 BAM submitted_aligned CPTAC3 1b1b3975-af99-4c0c-b4a3-1c3edd4a014b 84977987ec85fa32faa5c33689ff53ce {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.WXS.A.hg38 C3N-00519 HNSCC WXS tissue_normal CPT0013460009 7dc7bef4-5a1d-4370-869a-acfcd70b05ac_wxs_gdc_realn.bam 37330572957 BAM harmonized CPTAC3 d12e1aab-df96-4867-a4bd-7358c2250252 078005680638d4e91176abb358a9cba3 {"aliquot_tag": "ALQ_88884adc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00519.WXS.N C3N-00519 HNSCC WXS blood_normal CPT0013520002 CPT0013520002.WholeExome.RP-1303.bam 27310851064 BAM submitted_aligned CPTAC3 d5d16d88-9499-4535-8181-32a362f4b32a c1faf5298056e2c72b80e3e56208cc70 {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00519.WXS.N.hg38 C3N-00519 HNSCC WXS blood_normal CPT0013520002 f7713c0e-dc58-4cb2-bb49-f249a4eb451a_gdc_realn.bam 37138045212 BAM harmonized CPTAC3 0c6a1da0-3bab-402c-9b78-6b51ba514451 b4ea9dad20fd22bd9b6ba60277707200 {"aliquot_tag": "ALQ_2186e631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00519.WXS.T C3N-00519 HNSCC WXS tumor CPT0013430009 CPT0013430009.WholeExome.RP-1303.bam 30227562466 BAM submitted_aligned CPTAC3 67ff1bce-0a8a-464b-ba49-77281a53cfb1 c393dc7bff72dddf9c0551ebfc946146 {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00519.WXS.T.hg38 C3N-00519 HNSCC WXS tumor CPT0013430009 b2f47f5d-2722-4065-a554-c67264a3b7af_gdc_realn.bam 41582755992 BAM harmonized CPTAC3 a8b606e8-ca56-425b-9df4-7266dfb54a36 36b77364525e6264709bac12bedc8f2a {"aliquot_tag": "ALQ_4068c5ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00520.MethArray.Green.T C3N-00520 UCEC Methylation_Array tumor CPT0115000007 203219670122_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 58ee1695-1e8f-4578-a9ad-7cf514a2455c 3090e0e2803ad608487e166a127cfba3 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.MethArray.Red.T C3N-00520 UCEC Methylation_Array tumor CPT0115000007 203219670122_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 defd5536-cedb-49f6-a427-ee3ba4bfe090 f9e470f848c373331a33fcb8617670f5 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.miRNA-Seq.A.hg38 C3N-00520 UCEC miRNA-Seq tissue_normal CPT0115040009 8254907f-96f2-46dd-82b5-8e601d60dbb0_mirnaseq_gdc_realn.bam 237641113 BAM harmonized CPTAC3 0c1ae3a2-e3c0-4a96-98c5-18031599638e ecd083521bcb13916ca89a22cb33640e {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.miRNA-Seq.S41_L003_R1.A C3N-00520 UCEC miRNA-Seq tissue_normal CPT0115040009 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L003_R1_001.unaln.bam 211499158 BAM S41_L003_R1 submitted_unaligned CPTAC3 134eec76-40ad-4b86-a71c-fcfd74bb1f87 3480c243a4fccd3d3062fea745d4722a {"aliquot_tag": "ALQ_1d727ad3", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.miRNA-Seq.S41_L003_R1.T C3N-00520 UCEC miRNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0176_AHYGLVBBXX_GACGAC_S41_L003_R1_001.unaln.bam 225524250 BAM S41_L003_R1 submitted_unaligned CPTAC3 bfa8f9d4-6562-4af1-9681-0abfee3adbcc d0dda17010b66cad980dc0282d723da1 {"aliquot_tag": "ALQ_883555f6", "sample": "S41", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.miRNA-Seq.T.hg38 C3N-00520 UCEC miRNA-Seq tumor CPT0115000010 a9c2d09a-55b7-462d-823d-ecc961c9b21f_mirnaseq_gdc_realn.bam 246197719 BAM harmonized CPTAC3 e1c992dd-cd83-4253-97f9-0b536c9bf5a7 b551f730d22310469b51e8911e815db4 {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.chimeric.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.chimeric.gdc_realn.bam 43600116 BAM chimeric harmonized CPTAC3 5c847937-89f3-4d3a-bf01-af2762f125a8 f4f82ebc67d462649e711f09682b6a18 {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.RNA-Seq.chimeric.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.chimeric.gdc_realn.bam 32119133 BAM chimeric harmonized CPTAC3 1920f28c-06d3-4293-b1b6-e5cae999f9c0 53a9bf3b1efdf901f902a66cbdd1ef3c {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.chimeric.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.chimeric.gdc_realn.bam 181838447 BAM chimeric harmonized CPTAC3 5734a3db-be94-45be-8545-6a2503fab522 0147f3be5b22a42fbd497185ca9876c0 {"aliquot_tag": "ALQ_c29c653c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.genomic.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.genomic.gdc_realn.bam 10128541442 BAM genomic harmonized CPTAC3 e86bbc57-2ded-48fb-b195-d9017ccd9bfe d22c3299f41be8d0e86a458bb1576fc4 {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.RNA-Seq.genomic.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.genomic.gdc_realn.bam 9513087321 BAM genomic harmonized CPTAC3 c250644d-5e2c-40fc-8510-1a9f6557d836 6c9aa06a593265816c8d8c8c6b6f78ba {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.genomic.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.genomic.gdc_realn.bam 10003348786 BAM genomic harmonized CPTAC3 83b5a606-6e22-4757-a728-a6b4451fb1bb 7cfef2d6483593b63df8711239f61d05 {"aliquot_tag": "ALQ_c29c653c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.S16_L006_R1.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R1_001.fastq.gz 4335911078 FASTQ S16_L006_R1 submitted_unaligned CPTAC3 b44c72d4-31f1-45ed-94f8-79ab011238ec 7bdf34282f9e8ce755d5688f2b5cf00f {"aliquot_tag": "ALQ_1d727ad3", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.RNA-Seq.S16_L006_R2.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R2_001.fastq.gz 4882238317 FASTQ S16_L006_R2 submitted_unaligned CPTAC3 c363744e-8286-4bfb-a810-158ac546af31 db4d48a2ed1db010d8d45f783c77a699 {"aliquot_tag": "ALQ_1d727ad3", "sample": "S16", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.RNA-Seq.S23_L008_R1.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R1_001.fastq.gz 3941067625 FASTQ S23_L008_R1 submitted_unaligned CPTAC3 37f04704-d9e0-4728-9466-38d72703f0bb 77387cb74a65e5931c7faea45a028c8a {"aliquot_tag": "ALQ_883555f6", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.S23_L008_R2.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R2_001.fastq.gz 4134888240 FASTQ S23_L008_R2 submitted_unaligned CPTAC3 64f7d7f3-03a1-4159-88c6-9443080e391f 98d56108650b71f88cd0d2e9ac1c9cb2 {"aliquot_tag": "ALQ_883555f6", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.S96_R1.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R1_001.fastq.gz 7325829920 FASTQ S96_R1 submitted_unaligned CPTAC3 3d566221-5aa7-4ad5-ae97-42115975a08e 39fd46cd6371472208d03718fc28da96 {"aliquot_tag": "ALQ_c29c653c", "sample": "S96", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.S96_R2.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R2_001.fastq.gz 7575110561 FASTQ S96_R2 submitted_unaligned CPTAC3 6b9bcc54-d829-41ad-97ef-4f5545c0f7f2 5aa21c829fe4c811bf1d579a7c2ffb7e {"aliquot_tag": "ALQ_c29c653c", "sample": "S96", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.transcriptome.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.transcriptome.gdc_realn.bam 10759913534 BAM transcriptome harmonized CPTAC3 7ddf76b7-6141-4a36-b8d5-1d1b872c6f06 6f7848eac67b7698c8b184a54ec09605 {"aliquot_tag": "ALQ_1d727ad3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.RNA-Seq.transcriptome.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.transcriptome.gdc_realn.bam 8958026332 BAM transcriptome harmonized CPTAC3 d05af09a-1bc8-4ccb-9a07-97c87377f7f3 0c3ea638ed90fc4983ccbdf1345ba063 {"aliquot_tag": "ALQ_883555f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.RNA-Seq.transcriptome.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.transcriptome.gdc_realn.bam 5891228158 BAM transcriptome harmonized CPTAC3 6b68649d-2a0c-460d-b00f-618fc343432a 11ce11ba3a64bf4b9e22f8ff56ca336d {"aliquot_tag": "ALQ_c29c653c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.WGS.N C3N-00520 UCEC WGS blood_normal CPT0116000002 CPT0116000002.WholeGenome.RP-1303.bam 59370999097 BAM submitted_aligned CPTAC3 d92ac087-781b-4ac4-a557-1f23be743851 1ae0c7ff592f2145c589b133fe5ee89c {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00520.WGS.N.hg38 C3N-00520 UCEC WGS blood_normal CPT0116000002 cafab02f-1ebc-45de-90d8-abbea5891cb4_wgs_gdc_realn.bam 87069186616 BAM harmonized CPTAC3 b29b2b55-a510-484a-b34c-9747309d8351 81721c59563a157edc722461ccd0ae4a {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00520.WGS.T C3N-00520 UCEC WGS tumor CPT0115000007 CPT0115000007.WholeGenome.RP-1303.bam 60322398741 BAM submitted_aligned CPTAC3 6bc9e6f2-0b26-439b-aa45-a2122244a79d 0737365dcbda6498d2d77877162c95f9 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.WGS.T.hg38 C3N-00520 UCEC WGS tumor CPT0115000007 77583640-4c16-464b-91a6-64ff04fa1421_wgs_gdc_realn.bam 87304983892 BAM harmonized CPTAC3 bd49bf77-f31b-4a9a-acfc-fa5a89f05ec8 0b439a583a50d0e636ff15f8dc122df5 {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.WXS.A C3N-00520 UCEC WXS tissue_normal CPT0115040006 CPT0115040006.WholeExome.RP-1303.bam 17177744481 BAM submitted_aligned CPTAC3 96b308a4-9d03-4728-a53e-6c17653f8ae3 f618c56dfb94598a063ec520f26381d7 {"aliquot_tag": "ALQ_8dcd6742", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.WXS.A.hg38 C3N-00520 UCEC WXS tissue_normal CPT0115040006 8f5b07e2-f211-43f2-a1f0-668a7adfe884_wxs_gdc_realn.bam 23598314549 BAM harmonized CPTAC3 4c4c05c7-f223-4f9d-9e05-2a6ed86b6772 9171eb90c58c6e65c175550411e8a1f6 {"aliquot_tag": "ALQ_8dcd6742", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00520.WXS.N C3N-00520 UCEC WXS blood_normal CPT0116000002 CPT0116000002.WholeExome.RP-1303.bam 29022244601 BAM submitted_aligned CPTAC3 7adf354a-56f9-40db-ad4e-b2827a92832f b96cf687aab393575029a29a7bf8a11d {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00520.WXS.N.hg38 C3N-00520 UCEC WXS blood_normal CPT0116000002 cafab02f-1ebc-45de-90d8-abbea5891cb4_wxs_gdc_realn.bam 40629885612 BAM harmonized CPTAC3 2018ed32-76f5-4008-85f0-de8e0cbd6a81 0ebda4f60beae3d4fd238214fb28b57c {"aliquot_tag": "ALQ_4ec81f06", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00520.WXS.T C3N-00520 UCEC WXS tumor CPT0115000007 CPT0115000007.WholeExome.RP-1303.bam 26177036245 BAM submitted_aligned CPTAC3 ad48d7c8-3102-4d2c-a2d2-3ade585b7d08 f6286ca9cf009010ceebb0385f37d49e {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00520.WXS.T.hg38 C3N-00520 UCEC WXS tumor CPT0115000007 77583640-4c16-464b-91a6-64ff04fa1421_wxs_gdc_realn.bam 35601090265 BAM harmonized CPTAC3 6174bc64-77fb-48be-bd26-51d910ff182e 6cb2e4df8da683c7af5a227e4cdc799a {"aliquot_tag": "ALQ_f4af114", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00545.MethArray.Green.A C3N-00545 LUAD Methylation_Array tissue_normal CPT0066930008 203027390091_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9c4ff73b-381b-4beb-bc0a-d04e8475ed25 7d7bda3b700e982fc809ef8ccf073604 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.MethArray.Green.T C3N-00545 LUAD Methylation_Array tumor CPT0066890006 202184900140_R06C01_Grn.idat 13676261 IDAT Green NA CPTAC3 28adc625-622b-45eb-960c-899de7a8a562 e53f4a730203167051e4f2edfe5f119e {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.MethArray.Red.A C3N-00545 LUAD Methylation_Array tissue_normal CPT0066930008 203027390091_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 184617f4-d4b5-4c90-85dc-47465e4b7085 3df42d9d4bd9521fab0d99b404ee2c53 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.MethArray.Red.T C3N-00545 LUAD Methylation_Array tumor CPT0066890006 202184900140_R06C01_Red.idat 13676261 IDAT Red NA CPTAC3 be802bb5-106a-4330-a223-4d5cca22286f f2531feb98784d11373a5de29c3709f2 {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.miRNA-Seq.A.hg38 C3N-00545 LUAD miRNA-Seq tissue_normal CPT0066930005 9bee9add-07d8-4c2e-87d5-71e39edbaac4_mirnaseq_gdc_realn.bam 363849933 BAM harmonized CPTAC3 97df9379-5cc6-4474-9b1a-500daa97c65e bb49eaf168aed6485dc9d56d509e8bd5 {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.miRNA-Seq.S35_L008_R1.A C3N-00545 LUAD miRNA-Seq tissue_normal CPT0066930005 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L008_R1_001.unaln.bam 340074823 BAM S35_L008_R1 submitted_unaligned CPTAC3 46632a8c-d298-443e-9958-5b7c9b910d38 6733a4cf7dc97c09034c8a85bbdcbec2 {"aliquot_tag": "ALQ_adbdbce7", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.REP_4e74be3d.MethArray.Green.T C3N-00545 LUAD Methylation_Array tumor CPT0066910006 203027390078_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d4a5d913-2c3b-443d-b695-34039ceaa4a0 c11ba7c54a3315ef6a8e344d44bb0c5c {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_4e74be3d.MethArray.Red.T C3N-00545 LUAD Methylation_Array tumor CPT0066910006 203027390078_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 16e8bf55-f2ab-4c7e-aef7-fcd2cc770a34 c9757e0e1899c101f1cbd4252cbbaf4b {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_4e74be3d.WGS.T C3N-00545 LUAD WGS tumor CPT0066910006 CPT0066910006.WholeGenome.RP-1303.bam 61178169313 BAM submitted_aligned CPTAC3 10b76e66-821d-4210-9500-ad805ce01c7b eb832e3707c594f7043992e12007d448 {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_4e74be3d.WGS.T.hg38 C3N-00545 LUAD WGS tumor CPT0066910006 db37ef3d-5f8d-47c4-9f46-2ecafb8ee37b_wgs_gdc_realn.bam 89133915757 BAM harmonized CPTAC3 d172360d-5cd4-483a-bc9e-ec9306374fc6 921e9df8a3d0580ce13d2ea5156a9ea3 {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_4e74be3d.WXS.T C3N-00545 LUAD WXS tumor CPT0066910006 CPT0066910006.WholeExome.RP-1303.bam 41051144434 BAM submitted_aligned CPTAC3 a3d38eee-803f-4ef7-b9a5-12313467a136 654fa7b05cc3ba9140c45a030a395e7e {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_4e74be3d.WXS.T.hg38 C3N-00545 LUAD WXS tumor CPT0066910006 db37ef3d-5f8d-47c4-9f46-2ecafb8ee37b_wxs_gdc_realn.bam 56785034773 BAM harmonized CPTAC3 0336e36c-8b35-4d98-a5d8-087891d1e750 98f8253453f5b0d42de3eb526f0b5eec {"aliquot_tag": "REP_4e74be3d", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_decba3ac.miRNA-Seq.S9_L005_R1.T C3N-00545 LUAD miRNA-Seq tumor CPT0066910009 181113_UNC31-K00269_0164_AH23NNBBXY_CAGGCG_S9_L005_R1_001.unaln.bam 223125879 BAM S9_L005_R1 submitted_unaligned CPTAC3 c0690cda-cbfa-4206-826d-9c91903e4802 da2fea56547310536f7825f7b499025f {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_decba3ac.miRNA-Seq.T.hg38 C3N-00545 LUAD miRNA-Seq tumor CPT0066910009 c5457d01-f4f0-446a-a62d-a2e5703f3d92_mirnaseq_gdc_realn.bam 245915407 BAM harmonized CPTAC3 e30b037c-51be-4be5-977c-960f65b3c731 f90d1af845af876f26c81cb2bfa2d768 {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_decba3ac.RNA-Seq.chimeric.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.chimeric.gdc_realn.bam 27556640 BAM chimeric harmonized CPTAC3 a675301c-f067-4342-a1ba-cfa93c9abf6e a76b295b4a795894457990c07d9cec86 {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_decba3ac.RNA-Seq.genomic.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.genomic.gdc_realn.bam 7224136868 BAM genomic harmonized CPTAC3 b5c06561-24f7-46ac-a3bf-f4b376b6ac2e c900f242123d94fcc1364068f6f6e0dd {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_decba3ac.RNA-Seq.S24_L007_R1.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R1_001.fastq.gz 3228816890 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 5c4d34ea-977b-4477-84c4-c72a1d817f6a a011f254f1554ce8c8912d163760c3ce {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_decba3ac.RNA-Seq.S24_L007_R2.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R2_001.fastq.gz 3442853503 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 a3c1384f-8fc8-4a06-a292-673a478da5e7 4b370165806afe30a15e0a5d156879de {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.REP_decba3ac.RNA-Seq.transcriptome.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.transcriptome.gdc_realn.bam 9365875572 BAM transcriptome harmonized CPTAC3 76db6b1c-0071-45fe-bf17-f7a435d4b8fa 5e6a6f9ac89728d8c0b1b20ba4c56e0a {"aliquot_tag": "REP_decba3ac", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.RNA-Seq.chimeric.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.chimeric.gdc_realn.bam 73159545 BAM chimeric harmonized CPTAC3 c12ac8cd-dee0-4038-a0ec-976af154b012 a6ddb66c3d37970a3c264514f77eb404 {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.RNA-Seq.chimeric.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.chimeric.gdc_realn.bam 27223919 BAM chimeric harmonized CPTAC3 62283599-ec19-46e6-b259-52a38fd516fe 8d60920b4b7a5a5f7a1628a61a1bee2c {"aliquot_tag": "ALQ_25e73bc8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.RNA-Seq.genomic.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.genomic.gdc_realn.bam 7241924520 BAM genomic harmonized CPTAC3 1e60692f-746f-4ea4-8885-6323946dca0b 7548605f955fd0d303c3b81bff2d8aae {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.RNA-Seq.genomic.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.genomic.gdc_realn.bam 8838318095 BAM genomic harmonized CPTAC3 5cb4b155-7fa9-4af1-930d-1f5c3dc1b494 744bd390bb03baed4e526abf04120292 {"aliquot_tag": "ALQ_25e73bc8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.RNA-Seq.S4_L001_R1.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R1_001.fastq.gz 3481257854 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 f8551601-ae62-4c3a-a6f9-54a5b61a7029 ba8c3c736a921eb009e60b63fb83f9a6 {"aliquot_tag": "ALQ_adbdbce7", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.RNA-Seq.S4_L001_R2.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R2_001.fastq.gz 4032403866 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 77e85028-53b6-4157-95e0-90d9c9635e21 f79b55652e334c409c16a1eaab1c8e28 {"aliquot_tag": "ALQ_adbdbce7", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.RNA-Seq.S8_L002_R1.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 3750262051 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 fd3861f3-4713-4c88-a4e4-2f67e02fe102 03182b661ba569883f666b0b13cf9483 {"aliquot_tag": "ALQ_25e73bc8", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.RNA-Seq.S8_L002_R2.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 4129280376 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 a33cde2f-484a-49df-9cb3-2c0dd9d0f73c d2fce6f71c5026f9edd36fb78f602f48 {"aliquot_tag": "ALQ_25e73bc8", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.RNA-Seq.transcriptome.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.transcriptome.gdc_realn.bam 9155420440 BAM transcriptome harmonized CPTAC3 f4a8e20e-8d0e-4b84-ba25-471563258e6d 4f43acf6e57f6810dbaa692d0cbd67c5 {"aliquot_tag": "ALQ_adbdbce7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.RNA-Seq.transcriptome.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.transcriptome.gdc_realn.bam 8982139098 BAM transcriptome harmonized CPTAC3 7942613a-c7ef-448e-a62c-994bcf263ea6 e6984d159a5dc4ad79e1e69361e2db12 {"aliquot_tag": "ALQ_25e73bc8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.WGS.A C3N-00545 LUAD WGS tissue_normal CPT0066930008 CPT0066930008.WholeGenome.RP-1303.bam 54914703437 BAM submitted_aligned CPTAC3 8a494e7c-b8ee-4066-9feb-60844052a151 2341f57c1ebbbe10ba67217518a3cf66 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.WGS.A.hg38 C3N-00545 LUAD WGS tissue_normal CPT0066930008 5603a402-13d4-4f67-a990-303a0402b1e4_wgs_gdc_realn.bam 80913083769 BAM harmonized CPTAC3 769e8e66-a4ee-4bb2-9358-419d71e16dfc c323802d46a985a98b865d1b43081e48 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.WGS.N C3N-00545 LUAD WGS blood_normal CPT0067010002 CPT0067010002.WholeGenome.RP-1303.bam 87778078950 BAM submitted_aligned CPTAC3 0366f2dd-89cb-4611-b026-1bc4fa805bcb 46a1348ea813d1ca0fed7fcae7c17596 {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00545.WGS.N.hg38 C3N-00545 LUAD WGS blood_normal CPT0067010002 0ea25eb8-290a-4a16-a5db-b5b4c4be0e32_gdc_realn.bam 137891274230 BAM harmonized CPTAC3 95404d73-3b20-470a-b1ad-77c1f428b7fb 5bd35933a33427cd6942a3ffac51fcac {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00545.WGS.T C3N-00545 LUAD WGS tumor CPT0066890006 CPT0066890006.WholeGenome.RP-1303.bam 68357235084 BAM submitted_aligned CPTAC3 eb45281d-ba05-4621-bf17-28f400e395ca d12a3dd85ac9eed64570e8251a58ef6e {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.WGS.T.hg38 C3N-00545 LUAD WGS tumor CPT0066890006 28c2e390-63d5-49fc-8610-b16acd0f824c_gdc_realn.bam 102670797494 BAM harmonized CPTAC3 0e4539ba-3964-4888-81fe-e67e5b7afd45 70ece26fdbd5f5ead4ab0eb555c1792a {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.WXS.A C3N-00545 LUAD WXS tissue_normal CPT0066930008 CPT0066930008.WholeExome.RP-1303.bam 36577327908 BAM submitted_aligned CPTAC3 087c41a1-16b6-4fd6-9acd-bd1619e2ae50 5db3e7862aa5e3397bd5f4800c508d26 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.WXS.A.hg38 C3N-00545 LUAD WXS tissue_normal CPT0066930008 5603a402-13d4-4f67-a990-303a0402b1e4_wxs_gdc_realn.bam 48830181410 BAM harmonized CPTAC3 11f89b3c-a6c0-4c0d-80e6-6d2d55064985 74fc78110a9464cd14cf02c0693a0ec7 {"aliquot_tag": "ALQ_d30cc05a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00545.WXS.N C3N-00545 LUAD WXS blood_normal CPT0067010002 CPT0067010002.WholeExome.RP-1303.bam 24241653466 BAM submitted_aligned CPTAC3 8817e15e-5a69-4641-8c64-a66af6d3e356 157a82ce1673799e00e6d5d73e29d588 {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00545.WXS.N.hg38 C3N-00545 LUAD WXS blood_normal CPT0067010002 0ea25eb8-290a-4a16-a5db-b5b4c4be0e32_gdc_realn.bam 32774662433 BAM harmonized CPTAC3 2ac6cf26-7fa7-460f-a31e-3646f7b0f241 5d88238560b3c6b24b94de66e2226ae2 {"aliquot_tag": "ALQ_c8612058", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00545.WXS.T C3N-00545 LUAD WXS tumor CPT0066890006 CPT0066890006.WholeExome.RP-1303.bam 24089106965 BAM submitted_aligned CPTAC3 8f74b67f-e3e8-4f21-8fa3-88012ca240c0 2c41055ff8cc831c4bb6c6e55900719a {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00545.WXS.T.hg38 C3N-00545 LUAD WXS tumor CPT0066890006 28c2e390-63d5-49fc-8610-b16acd0f824c_gdc_realn.bam 33979983169 BAM harmonized CPTAC3 b594ed24-335e-44ba-8f8c-e317b5f85814 31af578174eed3dc28ed55a515e7cc4a {"aliquot_tag": "ALQ_b5582659", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.MethArray.Green.A C3N-00546 LUAD Methylation_Array tissue_normal CPT0067110009 203027390034_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a3d97d6d-d189-464f-bff9-e0ebdaccc35d a29f8cecc567030e2d2b847122d36b83 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.MethArray.Green.T C3N-00546 LUAD Methylation_Array tumor CPT0067070006 202184900105_R05C01_Grn.idat 13676223 IDAT Green NA CPTAC3 72ac824e-fcb0-4f7c-a16a-7c2c9f5f47b3 6cdf0001fb7382ab968d2e3ae04a7532 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.MethArray.Red.A C3N-00546 LUAD Methylation_Array tissue_normal CPT0067110009 203027390034_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 b4424c55-7db1-42de-a2b9-d8d9c39162c0 b8aea211e398b963f8a5a8da17e2f83f {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.MethArray.Red.T C3N-00546 LUAD Methylation_Array tumor CPT0067070006 202184900105_R05C01_Red.idat 13676223 IDAT Red NA CPTAC3 3427e91c-5a7d-4de6-afd1-71d0d96495bf ddf425e1d166eb425e945c6459ef8760 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.miRNA-Seq.A.hg38 C3N-00546 LUAD miRNA-Seq tissue_normal CPT0067110006 d16e57d7-bcf5-40c2-aceb-3d5de2856f65_mirnaseq_gdc_realn.bam 261313578 BAM harmonized CPTAC3 f542b3e7-7a23-4ec5-8f27-8c5a00b365e6 4bbc2baaaf56756a09d02260f1172a96 {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.miRNA-Seq.S16_L001_R1.T C3N-00546 LUAD miRNA-Seq tumor CPT0067070013 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L001_R1_001.unaln.bam 200781876 BAM S16_L001_R1 submitted_unaligned CPTAC3 d404ab17-3261-4264-96a2-89b8b86b06f0 0a7a56290ec81630ed8b8abdfffbf582 {"aliquot_tag": "ALQ_293dd42f", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.miRNA-Seq.S40_L008_R1.A C3N-00546 LUAD miRNA-Seq tissue_normal CPT0067110006 181108_UNC31-K00269_0162_AH255GBBXY_CCGTCC_S40_L008_R1_001.unaln.bam 237847698 BAM S40_L008_R1 submitted_unaligned CPTAC3 48da2265-64db-4145-a7f1-35d69e0b64d3 0490766830b045330d889d5832135eb6 {"aliquot_tag": "ALQ_45037e4", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.miRNA-Seq.T.hg38 C3N-00546 LUAD miRNA-Seq tumor CPT0067070013 b99e93f4-77da-4e87-918d-b9d7b6a7e39d_mirnaseq_gdc_realn.bam 220150389 BAM harmonized CPTAC3 a877f800-f1df-4c30-8804-49cef5005e8b 09d2342fa8ea8dcd25d9d348e310f152 {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.RNA-Seq.chimeric.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.chimeric.gdc_realn.bam 85645604 BAM chimeric harmonized CPTAC3 15ed702c-1e8a-4b1e-8804-7373c6bb86fc 10a01707c5a04f3f8beeab30348f3105 {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.RNA-Seq.chimeric.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.chimeric.gdc_realn.bam 60108586 BAM chimeric harmonized CPTAC3 764fe32e-855a-424d-964e-1d35e8aeb10d 0d0fd279cad0b2a673aadae0b43a035e {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.RNA-Seq.genomic.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.genomic.gdc_realn.bam 8966041867 BAM genomic harmonized CPTAC3 6930f967-1067-4d73-8601-236ac8838746 573ccc83cfdfab0fd1a80c0f0f215991 {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.RNA-Seq.genomic.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.genomic.gdc_realn.bam 9006241779 BAM genomic harmonized CPTAC3 27d157bb-1734-4852-b762-70839b1ea207 f20a6b51ff71621eb36f3a9a437527d5 {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.RNA-Seq.S81_L008_R1.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R1_001.fastq.gz 4553021601 FASTQ S81_L008_R1 submitted_unaligned CPTAC3 9355f328-7901-49ad-aa10-a44cdcc09b09 482f60e761f41d4cffeaf3ba2bdafa60 {"aliquot_tag": "ALQ_45037e4", "sample": "S81", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.RNA-Seq.S81_L008_R2.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R2_001.fastq.gz 4401394210 FASTQ S81_L008_R2 submitted_unaligned CPTAC3 57483e4e-e448-493d-8506-ba821aa4c877 6d3bea573da72b0d35e40ebd43063762 {"aliquot_tag": "ALQ_45037e4", "sample": "S81", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.RNA-Seq.S9_L003_R1.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4177294750 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 a16e8643-3620-410b-bf65-f5585d84d6d9 05315c26746f9b83ebd2a065ebf187f2 {"aliquot_tag": "ALQ_293dd42f", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.RNA-Seq.S9_L003_R2.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4564872627 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 346e852f-36d4-4a1c-ab55-3b44e213ba9b 71dedff291243474be94f8f891574693 {"aliquot_tag": "ALQ_293dd42f", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.RNA-Seq.transcriptome.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.transcriptome.gdc_realn.bam 10435092100 BAM transcriptome harmonized CPTAC3 c63e195d-1493-45b2-bc3e-c2a5139bb907 e70c151e67eca425fa8fe9292e00696d {"aliquot_tag": "ALQ_45037e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.RNA-Seq.transcriptome.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.transcriptome.gdc_realn.bam 10510554664 BAM transcriptome harmonized CPTAC3 db4b7c6c-bdce-433b-aa0e-67332f08ff73 7ee56f9a080c1d2a6d1ea8b6f4404fb2 {"aliquot_tag": "ALQ_293dd42f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.WGS.A C3N-00546 LUAD WGS tissue_normal CPT0067110009 CPT0067110009.WholeGenome.RP-1303.bam 67546955495 BAM submitted_aligned CPTAC3 4ea0c5a1-b031-42b2-a660-f9392d4ce4fd 1771b45afd4bed1eab178074707af5e7 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.WGS.A.hg38 C3N-00546 LUAD WGS tissue_normal CPT0067110009 e896e137-ed7c-4689-9780-769d67853f73_wgs_gdc_realn.bam 98052313255 BAM harmonized CPTAC3 3b695717-fc9b-4963-88c1-eac2aa0b6025 5296d10d43c3dacf6b39e5580073d19d {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.WGS.N C3N-00546 LUAD WGS blood_normal CPT0067190002 CPT0067190002.WholeGenome.RP-1303.bam 73784451163 BAM submitted_aligned CPTAC3 fb7f9e82-f7fe-4183-84e6-6b836d6f74d8 847030578fc305acc6bcd5d352d46838 {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00546.WGS.N.hg38 C3N-00546 LUAD WGS blood_normal CPT0067190002 2da0a12e-556f-4ed6-a626-831681da020e_gdc_realn.bam 111888101633 BAM harmonized CPTAC3 f5ab5a28-17d3-405c-b2ca-5945333bd155 d0ae940417454cb889fc3743e759ae8e {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00546.WGS.T C3N-00546 LUAD WGS tumor CPT0067070006 CPT0067070006.WholeGenome.RP-1303.bam 63816386536 BAM submitted_aligned CPTAC3 a351cbce-8dbc-4d01-b9ca-53afb7e21edc 9b2b10537d3887a96fb8a8198540f741 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.WGS.T.hg38 C3N-00546 LUAD WGS tumor CPT0067070006 1caecc54-634b-4108-90bd-d813bb5506dc_gdc_realn.bam 95249261919 BAM harmonized CPTAC3 8cf057e8-1e3e-4d0a-9ce1-ff673a2161fc 8e8d85cd801d1db8b74aff27cc33aa16 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.WXS.A C3N-00546 LUAD WXS tissue_normal CPT0067110009 CPT0067110009.WholeExome.RP-1303.bam 41214966771 BAM submitted_aligned CPTAC3 ce45ef95-633c-4609-900b-5c172da2f333 2d98d9a94c5534f11c0fc212753c1655 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.WXS.A.hg38 C3N-00546 LUAD WXS tissue_normal CPT0067110009 e896e137-ed7c-4689-9780-769d67853f73_wxs_gdc_realn.bam 56666508154 BAM harmonized CPTAC3 8142f8a1-1c5e-44d6-85bc-9fdc4d1a1bea bb8c19c43905867d3ac2a9d6f2fb2af4 {"aliquot_tag": "ALQ_94ef2a75", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00546.WXS.N C3N-00546 LUAD WXS blood_normal CPT0067190002 CPT0067190002.WholeExome.RP-1303.bam 30578832873 BAM submitted_aligned CPTAC3 cfae9043-4bc7-4c12-ac5d-a33aed51cb90 a21c51ea375a035fa1dbf3cd8d290d58 {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00546.WXS.N.hg38 C3N-00546 LUAD WXS blood_normal CPT0067190002 2da0a12e-556f-4ed6-a626-831681da020e_gdc_realn.bam 40670117870 BAM harmonized CPTAC3 f25758fa-258a-4762-89a2-67e07e7ffde9 0de703d0194e7fffe7da61dc0c45399b {"aliquot_tag": "ALQ_334db83c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00546.WXS.T C3N-00546 LUAD WXS tumor CPT0067070006 CPT0067070006.WholeExome.RP-1303.bam 34962021754 BAM submitted_aligned CPTAC3 74e3d551-8427-48ca-a2c0-faf285fbd80f ade820af753288d4bb113069e6842bf4 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00546.WXS.T.hg38 C3N-00546 LUAD WXS tumor CPT0067070006 1caecc54-634b-4108-90bd-d813bb5506dc_gdc_realn.bam 48207085485 BAM harmonized CPTAC3 82f8f2a4-2b3b-498d-8bcb-3879cbbcf8a8 3a69794e864f02370a28654ecf04c627 {"aliquot_tag": "ALQ_404c11e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.MethArray.Green.A C3N-00547 LUAD Methylation_Array tissue_normal CPT0067290009 203028200034_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0016a4e0-99a1-434b-ad6f-5e2b284112a6 196ef9812088bf53d062b3560b1ff150 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.MethArray.Green.T C3N-00547 LUAD Methylation_Array tumor CPT0067250006 202184990069_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5de13c5f-81ee-40b9-8e98-6690a59d8da1 77603321243c406f2ac37c590999b5af {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.MethArray.Red.A C3N-00547 LUAD Methylation_Array tissue_normal CPT0067290009 203028200034_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 cbeeb6ce-bbc6-445e-9987-bcf8ad8db5a6 c1ed7f3454f35c557875d1722975b999 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.MethArray.Red.T C3N-00547 LUAD Methylation_Array tumor CPT0067250006 202184990069_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 168734cb-4e84-4fef-9e9c-684135080250 5b4b764487c77ac33bc8fbdc99290e90 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.miRNA-Seq.A.hg38 C3N-00547 LUAD miRNA-Seq tissue_normal CPT0067290006 ed2a110d-9362-44e8-b380-2b4949818e27_mirnaseq_gdc_realn.bam 336168160 BAM harmonized CPTAC3 39c1d2fa-90c7-4382-9d4e-5e7bf5489216 ce4c8f53e13a778e0787cfc77ccb6745 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.miRNA-Seq.S2_L008_R1.T C3N-00547 LUAD miRNA-Seq tumor CPT0067250009 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L008_R1_001.unaln.bam 192988243 BAM S2_L008_R1 submitted_unaligned CPTAC3 647d9f8a-c628-4c69-ab1d-fc234078ae37 c486492c21c1aa563ae699450ee106b8 {"aliquot_tag": "ALQ_e7fbfe1b", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.miRNA-Seq.S41_L008_R1.A C3N-00547 LUAD miRNA-Seq tissue_normal CPT0067290006 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L008_R1_001.unaln.bam 308053951 BAM S41_L008_R1 submitted_unaligned CPTAC3 c6f605fc-6f81-4adc-8f15-15c3f7d37013 09a1dbf47c2d6e9fb2c320946e5b68ff {"aliquot_tag": "ALQ_b2b40e8b", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.miRNA-Seq.T.hg38 C3N-00547 LUAD miRNA-Seq tumor CPT0067250009 54b6ab73-6d58-4835-9069-3320fd8c5b67_mirnaseq_gdc_realn.bam 206476390 BAM harmonized CPTAC3 487f4d53-ae0d-4fbc-bda0-9ce2f75271c0 32271c59eddc984550fdfd9d99aad91f {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.RNA-Seq.chimeric.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.chimeric.gdc_realn.bam 61373654 BAM chimeric harmonized CPTAC3 30a8bd8a-40e4-485e-83d0-571970e9706d 2ec5945c2eeaa11ab2daaf5443709691 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.RNA-Seq.chimeric.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.chimeric.gdc_realn.bam 269108907 BAM chimeric harmonized CPTAC3 e11bb86b-4c2a-4619-9293-604f07ad0293 4218fe0b9b768f7a5a9b045226ed9c2b {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.RNA-Seq.genomic.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.genomic.gdc_realn.bam 8965603220 BAM genomic harmonized CPTAC3 51709e93-8717-476a-a90e-06ae3f4e1f34 a7d1c09855e8c82edb9a858714e04de0 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.RNA-Seq.genomic.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.genomic.gdc_realn.bam 8394780090 BAM genomic harmonized CPTAC3 b4c1a1d0-d192-4d73-9f2d-772ef85409a9 7487d86482b5575c2ec7e473be3a746a {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.RNA-Seq.S5_L008_R1.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3843449961 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 6576483b-ff32-4d93-8aa7-ab69ab639ec2 97321e7dad011589dd3f6bb83282630e {"aliquot_tag": "ALQ_e7fbfe1b", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.RNA-Seq.S5_L008_R2.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3891032663 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 b32a3c43-e786-4031-bb9a-226c301d9e99 a3868bda57b76cfe6abb045dab3c70a9 {"aliquot_tag": "ALQ_e7fbfe1b", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.RNA-Seq.S6_L008_R1.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R1_001.fastq.gz 3939937920 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 70f7d271-ed8c-4937-86e8-9bee4c523a4f 571b75112d98a4c6cfd91fa48416464e {"aliquot_tag": "ALQ_b2b40e8b", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.RNA-Seq.S6_L008_R2.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R2_001.fastq.gz 4441187376 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 cf65aa12-fe38-461f-ac85-607547d07c42 b929de83a2ec54e9fcae57693e558da1 {"aliquot_tag": "ALQ_b2b40e8b", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.RNA-Seq.transcriptome.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.transcriptome.gdc_realn.bam 9592262018 BAM transcriptome harmonized CPTAC3 8a88f6cd-32a9-43c6-9cc5-440b2527c1d2 6e6b3f79f22ae540f3f11ae8abac0a75 {"aliquot_tag": "ALQ_b2b40e8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.RNA-Seq.transcriptome.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.transcriptome.gdc_realn.bam 8336670302 BAM transcriptome harmonized CPTAC3 b5ecad11-8a96-416d-9a56-c0d0f98aafc6 98e7358ae4bc599255d4e5137f27c85a {"aliquot_tag": "ALQ_e7fbfe1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.WGS.A C3N-00547 LUAD WGS tissue_normal CPT0067290009 CPT0067290009.WholeGenome.RP-1303.bam 76205566754 BAM submitted_aligned CPTAC3 4685371b-f3ce-4c24-976e-35eea0e432fe e8b65e7f392cfe20ad363b7175894990 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.WGS.A.hg38 C3N-00547 LUAD WGS tissue_normal CPT0067290009 fac83b92-f4e8-4824-8bc5-e05a857bda61_wgs_gdc_realn.bam 110805374646 BAM harmonized CPTAC3 ace12421-3e17-477c-8325-cf7e3b296237 7015a567684c7b08974a0bb99416a3ae {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00547.WGS.N C3N-00547 LUAD WGS blood_normal CPT0067370002 CPT0067370002.WholeGenome.RP-1303.bam 63831924608 BAM submitted_aligned CPTAC3 7242057a-f94f-4352-b6ab-5c890c350c03 3ca47163b1981372b4ad00d89c0e06cd {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00547.WGS.N.hg38 C3N-00547 LUAD WGS blood_normal CPT0067370002 111fcdc8-3ab8-4064-b0ad-a0617700251e_gdc_realn.bam 95421149912 BAM harmonized CPTAC3 72cc93b3-91b8-4a4b-b55d-db09b5eaf6c9 3a601ffa1f45fc83c14bf7f88db50659 {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00547.WGS.T C3N-00547 LUAD WGS tumor CPT0067250006 CPT0067250006.WholeGenome.RP-1303.bam 83664701063 BAM submitted_aligned CPTAC3 2b89e19a-c413-4fe3-b69a-301e0c739667 fce9ec170beb04e36d32f7ded53365e7 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.WGS.T.hg38 C3N-00547 LUAD WGS tumor CPT0067250006 53288c31-b060-4d2d-b5c3-62cb54a0d74e_gdc_realn.bam 126452227155 BAM harmonized CPTAC3 b66592f6-ecb4-4495-ab33-c2b1ba2e97c7 a7ae6f68cf2d9fb8afa14c1fa6541517 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.WXS.A C3N-00547 LUAD WXS tissue_normal CPT0067290009 CPT0067290009.WholeExome.RP-1303.bam 44482750964 BAM submitted_aligned CPTAC3 8ee8e21e-8b16-428f-8854-2c5f59be6fd6 a9b114cbf5ea7d338e3b8bdf545889c8 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00547.WXS.A.hg38 C3N-00547 LUAD WXS tissue_normal CPT0067290009 fac83b92-f4e8-4824-8bc5-e05a857bda61_wxs_gdc_realn.bam 60391927344 BAM harmonized CPTAC3 d9d96aa6-20aa-43a7-9be0-375a053c1a05 8e40b708ed488df3b20444fda70f0de4 {"aliquot_tag": "ALQ_220b131a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00547.WXS.N C3N-00547 LUAD WXS blood_normal CPT0067370002 CPT0067370002.WholeExome.RP-1303.bam 29774238105 BAM submitted_aligned CPTAC3 d2446f56-dd21-43a4-98aa-16de72573097 00fe3676211f3cf7f8111dd143fce92c {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00547.WXS.N.hg38 C3N-00547 LUAD WXS blood_normal CPT0067370002 111fcdc8-3ab8-4064-b0ad-a0617700251e_gdc_realn.bam 40603003589 BAM harmonized CPTAC3 54499215-2538-46bc-ba16-f1ef797b7684 3f0306a4172b849e7612364bb47fb9f4 {"aliquot_tag": "ALQ_c1b5a756", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00547.WXS.T C3N-00547 LUAD WXS tumor CPT0067250006 CPT0067250006.WholeExome.RP-1303.bam 28078403882 BAM submitted_aligned CPTAC3 97c2c993-0268-46ba-af13-56f9d32834fc 51cdca46d3d0e57efc88953f75ad1242 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00547.WXS.T.hg38 C3N-00547 LUAD WXS tumor CPT0067250006 53288c31-b060-4d2d-b5c3-62cb54a0d74e_gdc_realn.bam 38397448142 BAM harmonized CPTAC3 93a36f05-aeff-4229-b681-345a78603fdd 4b58e67d16caa82a8dacba841f6a4512 {"aliquot_tag": "ALQ_7744e38a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.MethArray.Green.A C3N-00549 LUAD Methylation_Array tissue_normal CPT0067470010 203027390028_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7c4b7d08-4c51-4c86-9e8b-f0bcd5163b9f d7a0fb0b96e5f4727d5add5799f91df2 {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.MethArray.Green.T C3N-00549 LUAD Methylation_Array tumor CPT0067450006 202176290095_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f01b0f0a-6c57-4f9c-8cab-8da145b7cb59 4673a2ea6e2d6eb87bd7edf2ba30fc4b {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.MethArray.Red.A C3N-00549 LUAD Methylation_Array tissue_normal CPT0067470010 203027390028_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 5f6a466c-32b7-4dd6-be52-773dce3103d1 f1b860610586ff8986813a792cb2bdfb {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.MethArray.Red.T C3N-00549 LUAD Methylation_Array tumor CPT0067450006 202176290095_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 0047fbc3-358d-4931-a6c4-94dd08e88751 9919cf67e6953e2bcd129fa9cb46a7c0 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.miRNA-Seq.A.hg38 C3N-00549 LUAD miRNA-Seq tissue_normal CPT0067470007 4c1ebb1f-0181-456e-a3dc-fe04ca17a030_mirnaseq_gdc_realn.bam 276744479 BAM harmonized CPTAC3 7208c561-0339-48d3-8478-ea19b02afc55 9c78e55ebf47efda4a0d2e023aa579c8 {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.miRNA-Seq.S16_L001_R1.T C3N-00549 LUAD miRNA-Seq tumor CPT0067450009 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L001_R1_001.unaln.bam 192253647 BAM S16_L001_R1 submitted_unaligned CPTAC3 8dc6eec7-8bb2-44eb-86f1-07d9f861dea0 19c3224a90f2cacd9a9482661279f324 {"aliquot_tag": "ALQ_31a21d06", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.miRNA-Seq.S42_L008_R1.A C3N-00549 LUAD miRNA-Seq tissue_normal CPT0067470007 181108_UNC31-K00269_0162_AH255GBBXY_GTCCGC_S42_L008_R1_001.unaln.bam 251877075 BAM S42_L008_R1 submitted_unaligned CPTAC3 ede01c26-3919-4dc9-9902-1ddb30e5e8a5 3a73c21a31fec6d9f45a0535ccc135ce {"aliquot_tag": "ALQ_acda6361", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.miRNA-Seq.T.hg38 C3N-00549 LUAD miRNA-Seq tumor CPT0067450009 16eaff14-a03a-4727-85b5-defc7b451f35_mirnaseq_gdc_realn.bam 209778933 BAM harmonized CPTAC3 f883a8ea-55ac-474d-9262-59c6fe4f9ac8 765598ef09c4898cc4063f46a287631c {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.RNA-Seq.chimeric.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.chimeric.gdc_realn.bam 81482578 BAM chimeric harmonized CPTAC3 c7005007-de72-4115-a477-6534eff4df99 ec35d4f8c3dbfd41392950d0e3e3bddd {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.RNA-Seq.chimeric.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.chimeric.gdc_realn.bam 30198238 BAM chimeric harmonized CPTAC3 5f11b440-ea2e-4736-801f-597782877140 1a8513703e23ab88bfbaad66e1f623bf {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.RNA-Seq.genomic.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.genomic.gdc_realn.bam 8503421614 BAM genomic harmonized CPTAC3 f25b1c0f-53d3-4814-8295-ad511d5ee1d4 ad1d1f0126aa385f629e588e15317931 {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.RNA-Seq.genomic.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.genomic.gdc_realn.bam 8194475146 BAM genomic harmonized CPTAC3 b3a3a081-52ac-40d9-abd8-3f8a77c46544 7dc27c55c21ef616628d15ddd4ec281d {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.RNA-Seq.S17_L005_R1.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R1_001.fastq.gz 4010196717 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 154668d4-59cb-49a9-aa0d-08461440f214 b7cd7d05fd5d1484642fe63765a28831 {"aliquot_tag": "ALQ_31a21d06", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.RNA-Seq.S17_L005_R2.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R2_001.fastq.gz 4272357063 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 44ea39eb-a35d-4a3c-ab7f-8a652fe9b44e dd9b4d66f4f11a6126d44a832ee15ab3 {"aliquot_tag": "ALQ_31a21d06", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.RNA-Seq.S8_L008_R1.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R1_001.fastq.gz 3979552161 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 af200d9b-d9c0-4a76-8ca3-0749e2d15a57 a4d7e99332a610f514cb4f292b01551d {"aliquot_tag": "ALQ_acda6361", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.RNA-Seq.S8_L008_R2.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R2_001.fastq.gz 4093907616 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 02fa58de-b4e8-49ec-b38c-0fdb07d6ca3b b9a1d3e6621da69eaa7bd1f4b0c6f8e3 {"aliquot_tag": "ALQ_acda6361", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.RNA-Seq.transcriptome.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.transcriptome.gdc_realn.bam 9352104723 BAM transcriptome harmonized CPTAC3 513c2cfa-719d-441a-af51-26fc041ac32f eb9ce08ceb96af9b9d3a608d753b73ba {"aliquot_tag": "ALQ_acda6361", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.RNA-Seq.transcriptome.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.transcriptome.gdc_realn.bam 9644973629 BAM transcriptome harmonized CPTAC3 1ec3a04c-304d-417c-bb07-d3bc888b9964 84395712beceef5da0749abedd3540f4 {"aliquot_tag": "ALQ_31a21d06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.WGS.A C3N-00549 LUAD WGS tissue_normal CPT0067470010 CPT0067470010.WholeGenome.RP-1303.bam 62419695456 BAM submitted_aligned CPTAC3 92c6844e-df24-492b-883a-4ff90429bb1e c5da8d7e35deb74be6d800d454b5b877 {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.WGS.A.hg38 C3N-00549 LUAD WGS tissue_normal CPT0067470010 2210dd00-301f-4e3d-884a-8c31f719c3e7_wgs_gdc_realn.bam 93167218040 BAM harmonized CPTAC3 893a6769-06e8-43dd-8ef2-61870f9a4b24 d575589bdaf08a23b033259b24a1b662 {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.WGS.N C3N-00549 LUAD WGS blood_normal CPT0067550002 CPT0067550002.WholeGenome.RP-1303.bam 73381198481 BAM submitted_aligned CPTAC3 36f307d4-bd1f-4d2e-b714-640d7f8f7780 9285fd4715646ee3c9a350559b6e21b3 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00549.WGS.N.hg38 C3N-00549 LUAD WGS blood_normal CPT0067550002 9400b41a-1c41-4139-83b1-dc9c59f3535c_gdc_realn.bam 113287330947 BAM harmonized CPTAC3 75a2d28d-ff7a-4ab2-a2dd-ee502d96ff98 3427eda1af5c74dfa8b2c81c0003dca9 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00549.WGS.T C3N-00549 LUAD WGS tumor CPT0067450006 CPT0067450006.WholeGenome.RP-1303.bam 80314942538 BAM submitted_aligned CPTAC3 fdef4471-aeb8-4f0a-b8d3-6817f55db651 38d98f395aa0f06edaa2d6e0abe78389 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.WGS.T.hg38 C3N-00549 LUAD WGS tumor CPT0067450006 b269581f-4996-46b7-8cd4-67a687921374_gdc_realn.bam 119443173471 BAM harmonized CPTAC3 76b1affa-bdec-49d6-b41a-2b41875edbac a19da7290f1842576ecf12b71f838f7b {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.WXS.A C3N-00549 LUAD WXS tissue_normal CPT0067470010 CPT0067470010.WholeExome.RP-1303.bam 34984274510 BAM submitted_aligned CPTAC3 321c145d-fc0d-4336-9ae1-f13e075ff2dd 9e8c084c4878d93cd5e2e7a4e9b7c28f {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.WXS.A.hg38 C3N-00549 LUAD WXS tissue_normal CPT0067470010 2210dd00-301f-4e3d-884a-8c31f719c3e7_wxs_gdc_realn.bam 48159967312 BAM harmonized CPTAC3 a7a3e9f0-cc11-4602-9368-1c372e0c4949 5624e09817fdb9c015a46cbdfdb6719e {"aliquot_tag": "ALQ_2ba5c783", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00549.WXS.N C3N-00549 LUAD WXS blood_normal CPT0067550002 CPT0067550002.WholeExome.RP-1303.bam 24856797591 BAM submitted_aligned CPTAC3 eb24b207-e2a2-4d6b-848d-9443408d4896 2b7171b6304d681e73f8b404e36c72e9 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00549.WXS.N.hg38 C3N-00549 LUAD WXS blood_normal CPT0067550002 9400b41a-1c41-4139-83b1-dc9c59f3535c_gdc_realn.bam 33825533866 BAM harmonized CPTAC3 1ea2b3f3-deaa-4144-9eaa-9fb9652618b0 f4bbbb9b2da37c010ac79db371a00888 {"aliquot_tag": "ALQ_6d2c172b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00549.WXS.T C3N-00549 LUAD WXS tumor CPT0067450006 CPT0067450006.WholeExome.RP-1303.bam 26400758884 BAM submitted_aligned CPTAC3 850fc43c-5f44-420b-97ca-23855e9f728d 9b553aa66e88b663b200f6b248a49d44 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00549.WXS.T.hg38 C3N-00549 LUAD WXS tumor CPT0067450006 b269581f-4996-46b7-8cd4-67a687921374_gdc_realn.bam 36339108083 BAM harmonized CPTAC3 e3841eed-9dc6-4ff5-bf0c-744d595cf381 ee1c419bdb535f619296ebd96b5e1857 {"aliquot_tag": "ALQ_a11d0097", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.MethArray.Green.A C3N-00550 LUAD Methylation_Array tissue_normal CPT0067770009 203027390028_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e060469f-be14-4c73-94e8-813e202c0e76 69ddb507beb18cb51ee9481ec92c20ac {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.MethArray.Green.T C3N-00550 LUAD Methylation_Array tumor CPT0067620006 202184900127_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 d7a214a5-8747-4866-8724-ce6dfa7606b5 d10f6daa9aa9491239338244242de352 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.MethArray.Red.A C3N-00550 LUAD Methylation_Array tissue_normal CPT0067770009 203027390028_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b90cf78-83d7-45c9-8a1c-5db4e0ab9818 86b963a52e2a2c3569c52a300328a0d8 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.MethArray.Red.T C3N-00550 LUAD Methylation_Array tumor CPT0067620006 202184900127_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 b0bd79e3-fcea-43f0-ba9b-483ff5ce3920 4f5119ab17b6f43457fac48e9c13ef55 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.miRNA-Seq.A.hg38 C3N-00550 LUAD miRNA-Seq tissue_normal CPT0067770006 cb5f73c6-b1c0-4d34-ad16-767420cf2291_mirnaseq_gdc_realn.bam 280558043 BAM harmonized CPTAC3 f0168142-70f7-4565-a991-5bae1770a670 32b4228e6748b0f143537e35715c2ce1 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.miRNA-Seq.S17_L001_R1.T C3N-00550 LUAD miRNA-Seq tumor CPT0067620009 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 189707681 BAM S17_L001_R1 submitted_unaligned CPTAC3 2cd3deb4-56c5-4c30-83f0-ce5cd489775a c9d5a3b037cf7e61301d07f18c97c036 {"aliquot_tag": "ALQ_ce4a601d", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.miRNA-Seq.S43_L008_R1.A C3N-00550 LUAD miRNA-Seq tissue_normal CPT0067770006 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L008_R1_001.unaln.bam 255582808 BAM S43_L008_R1 submitted_unaligned CPTAC3 375be6c0-423c-438e-a101-0ed2696f77fc 22c632f204f62d710f886bcb0d0365e8 {"aliquot_tag": "ALQ_5d492159", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.miRNA-Seq.T.hg38 C3N-00550 LUAD miRNA-Seq tumor CPT0067620009 67bb7154-cfb4-4c29-ba67-c025d395d885_mirnaseq_gdc_realn.bam 206312806 BAM harmonized CPTAC3 a70f59d8-32f2-4fa2-bc4c-bb1c14a5b74a 5f1fb6b42d60b5f69f201ba39a15a4a8 {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.RNA-Seq.chimeric.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.chimeric.gdc_realn.bam 116784292 BAM chimeric harmonized CPTAC3 bf157dcf-f0dd-4e4f-b1a5-3be01709365d b283b7602bee409ac6ce634ec64ae106 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.RNA-Seq.chimeric.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.chimeric.gdc_realn.bam 22916056 BAM chimeric harmonized CPTAC3 685b30c1-88b2-4991-8efa-d52e0eff1f15 b10e59383c68df5f630b2bc4ee5b8199 {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.RNA-Seq.genomic.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.genomic.gdc_realn.bam 8303918161 BAM genomic harmonized CPTAC3 3b9924e5-82de-4cd4-b0f9-ea98f7db7b93 6be66604a701934952715228c9434f77 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.RNA-Seq.genomic.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.genomic.gdc_realn.bam 7495958990 BAM genomic harmonized CPTAC3 9675c43e-0c7c-4165-b3d5-c340267ad8ca 0c2cb0a882cbbcf144b9202fca92997a {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.RNA-Seq.S20_L005_R1.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R1_001.fastq.gz 3515716414 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 791fb1c3-7cd1-4ca5-a331-3bef8adf2c40 562bb187ae058e8cc9e5ffd515028e93 {"aliquot_tag": "ALQ_ce4a601d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.RNA-Seq.S20_L005_R2.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R2_001.fastq.gz 3843912618 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 8b6f0c92-16a0-4c0c-9cd2-17fafd97572d ab491e9ebe363492345608c2f27a0013 {"aliquot_tag": "ALQ_ce4a601d", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.RNA-Seq.S3_L007_R1.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R1_001.fastq.gz 4002937675 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 4cc60b03-ca6b-43ee-bc7c-ff4656d7476a d9d22523f7745cb24838c2626bf4b7de {"aliquot_tag": "ALQ_5d492159", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.RNA-Seq.S3_L007_R2.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R2_001.fastq.gz 4464279179 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 a5cb2d01-441b-4a21-92b5-7233e6b4bf0b 6215ee56fce751002bdb76d1cb1946ba {"aliquot_tag": "ALQ_5d492159", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.RNA-Seq.transcriptome.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.transcriptome.gdc_realn.bam 9843406068 BAM transcriptome harmonized CPTAC3 55d01376-65d5-4866-b7c8-2a6d04ead5dd 3a12230c2a17a4d13042784259e6a853 {"aliquot_tag": "ALQ_5d492159", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.RNA-Seq.transcriptome.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.transcriptome.gdc_realn.bam 10623267730 BAM transcriptome harmonized CPTAC3 34c714b2-040a-49e7-8abe-577e63367bef d06e6a92a00ae8f09ceb32c61f9db8e3 {"aliquot_tag": "ALQ_ce4a601d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.WGS.A C3N-00550 LUAD WGS tissue_normal CPT0067770009 CPT0067770009.WholeGenome.RP-1303.bam 56380642062 BAM submitted_aligned CPTAC3 8bd7ae54-dadc-46b8-a826-d8123c48c9cd a232864e8cc7710d15fd2fed209946b1 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.WGS.A.hg38 C3N-00550 LUAD WGS tissue_normal CPT0067770009 4e99325b-224f-4d44-9791-61fd8e4b735c_wgs_gdc_realn.bam 83959386181 BAM harmonized CPTAC3 0b563c9b-8d46-4c32-9fea-bdb6a5be5f24 794c7463ba61cea633643104093aeb82 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.WGS.N C3N-00550 LUAD WGS blood_normal CPT0067850002 CPT0067850002.WholeGenome.RP-1303.bam 71592199298 BAM submitted_aligned CPTAC3 ee106363-1f81-4939-bf37-b25619e54dec 4983d7d19aa77ecdf48d6e670840aa11 {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00550.WGS.N.hg38 C3N-00550 LUAD WGS blood_normal CPT0067850002 e1adcb02-b22a-4ee5-bf75-701907f3d2a0_gdc_realn.bam 107822909713 BAM harmonized CPTAC3 a17e365c-bf3d-4f64-bda6-6cf02df8ea02 4250b86ad040d35af8b7b02978314b18 {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00550.WGS.T C3N-00550 LUAD WGS tumor CPT0067620006 CPT0067620006.WholeGenome.RP-1303.bam 71468336655 BAM submitted_aligned CPTAC3 7371dc69-51a6-4608-996b-c1c3921e48e2 91eb38921fb54db9008c0c048c400cfc {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.WGS.T.hg38 C3N-00550 LUAD WGS tumor CPT0067620006 ab486740-7504-4009-8fa1-5b36b5ae988e_gdc_realn.bam 103421970091 BAM harmonized CPTAC3 8f91e7e3-9f42-451b-9e2b-f8908f9488a1 611dc10ecf6846c168902e4755bbd7c7 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.WXS.A C3N-00550 LUAD WXS tissue_normal CPT0067770009 CPT0067770009.WholeExome.RP-1303.bam 46883548726 BAM submitted_aligned CPTAC3 6f5dded3-79ca-4611-8942-0c396d8b6fea 4000996335cc6d28cdaef5046322e103 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.WXS.A.hg38 C3N-00550 LUAD WXS tissue_normal CPT0067770009 4e99325b-224f-4d44-9791-61fd8e4b735c_wxs_gdc_realn.bam 64542711435 BAM harmonized CPTAC3 3008d2b6-33f2-4188-98f7-b798e84c095d c6e79c4a237cc74105a6a48131158857 {"aliquot_tag": "ALQ_cdf63cc8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00550.WXS.N C3N-00550 LUAD WXS blood_normal CPT0067850002 CPT0067850002.WholeExome.RP-1303.bam 28806277885 BAM submitted_aligned CPTAC3 d1b48a25-a3af-4ac8-a04c-6bc98d9e88bb 2eb185a83eea43e9e50256097b8817f0 {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00550.WXS.N.hg38 C3N-00550 LUAD WXS blood_normal CPT0067850002 e1adcb02-b22a-4ee5-bf75-701907f3d2a0_gdc_realn.bam 39044458850 BAM harmonized CPTAC3 24a56d2c-52df-4b4e-890f-37bfeab84486 6041e79060540548f73e604fbe151d1e {"aliquot_tag": "ALQ_d1b204f5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00550.WXS.T C3N-00550 LUAD WXS tumor CPT0067620006 CPT0067620006.WholeExome.RP-1303.bam 27533393727 BAM submitted_aligned CPTAC3 e6277e1c-6416-4036-a8e2-a4dd0bcc27c3 2401d55610693505c2d9709f3ad33811 {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00550.WXS.T.hg38 C3N-00550 LUAD WXS tumor CPT0067620006 ab486740-7504-4009-8fa1-5b36b5ae988e_gdc_realn.bam 37776781482 BAM harmonized CPTAC3 8754ff08-daab-4b4c-b783-8bfb9a5a47a7 cbc14b25c126b58df36ad07d49c62a5d {"aliquot_tag": "ALQ_5ef57d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.MethArray.Green.A C3N-00551 LUAD Methylation_Array tissue_normal CPT0067950009 203027390078_R08C01_Grn.idat 13676228 IDAT Green NA CPTAC3 5aa1309f-f982-4989-88b1-47e9e8973e2b 03a01c9bc5281b9f774f079d48c27e51 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.MethArray.Green.T C3N-00551 LUAD Methylation_Array tumor CPT0067940006 202184990057_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4d24f8e4-4e29-475e-937f-c116c6ec320e 50f331121f76534deabe160c4c94600f {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.MethArray.Red.A C3N-00551 LUAD Methylation_Array tissue_normal CPT0067950009 203027390078_R08C01_Red.idat 13676228 IDAT Red NA CPTAC3 6aa69590-6e08-4c51-bec0-150784e157b8 3f25888ba50ff1d70df39809528234d1 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.MethArray.Red.T C3N-00551 LUAD Methylation_Array tumor CPT0067940006 202184990057_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a114a673-0ebf-4ded-bfe5-d9ac8df24735 b64fc3e52e1d3643155889c01310bdc5 {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.miRNA-Seq.A.hg38 C3N-00551 LUAD miRNA-Seq tissue_normal CPT0067950006 40895461-7f43-4b02-bf95-8ba8a000b116_mirnaseq_gdc_realn.bam 256422570 BAM harmonized CPTAC3 dd6dd727-67cd-4cce-8377-3b2b26a7e331 c9053eb14d7cbb719de629a4f2c23a86 {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.miRNA-Seq.S18_L001_R1.T C3N-00551 LUAD miRNA-Seq tumor CPT0067940009 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 179505673 BAM S18_L001_R1 submitted_unaligned CPTAC3 30131e43-140c-492b-8fdd-fc94c994c682 771a134e293b834074188f4eb26eb232 {"aliquot_tag": "ALQ_b05c2768", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.miRNA-Seq.S44_L008_R1.A C3N-00551 LUAD miRNA-Seq tissue_normal CPT0067950006 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L008_R1_001.unaln.bam 234106645 BAM S44_L008_R1 submitted_unaligned CPTAC3 c4ea9c56-fc32-453d-92bb-abd2fae47ef6 065336d0550c3959c9724d1fc6b1f36d {"aliquot_tag": "ALQ_1d831349", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.miRNA-Seq.T.hg38 C3N-00551 LUAD miRNA-Seq tumor CPT0067940009 0316fde7-9410-4bf4-8ea9-0fcab43a10fa_mirnaseq_gdc_realn.bam 195505530 BAM harmonized CPTAC3 6675de2d-d83d-4c5f-9518-2eb3cb6c35b4 8ffc9bb7ebe66e5addfd95ba4efa820b {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.RNA-Seq.chimeric.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.chimeric.gdc_realn.bam 93572212 BAM chimeric harmonized CPTAC3 68f597b9-a951-4d8c-866d-51aa81334445 6ee1f19dcd99bb774d47603351238014 {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.RNA-Seq.chimeric.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.chimeric.gdc_realn.bam 47838932 BAM chimeric harmonized CPTAC3 4594b4c5-fcba-4b65-8821-1f6b74c4d352 cb34022c0b7446668df49a38174589da {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.RNA-Seq.genomic.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.genomic.gdc_realn.bam 8977742637 BAM genomic harmonized CPTAC3 20eb1915-7928-4ad4-8675-a4f695bb3194 66a543e61678364853722dd15b22ff9e {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.RNA-Seq.genomic.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.genomic.gdc_realn.bam 8885705639 BAM genomic harmonized CPTAC3 d5ed9855-21a5-4f30-8bb4-f986fff7a861 84df683b06d8cf18c5798b6917d9e72f {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.RNA-Seq.S15_L004_R1.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R1_001.fastq.gz 4110274310 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 29bd87a3-d9bd-48dc-bd2e-2697bae33679 be57f997b4a94238c33a97ac7f4d9969 {"aliquot_tag": "ALQ_b05c2768", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.RNA-Seq.S15_L004_R2.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R2_001.fastq.gz 4159424531 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 c958395d-0d81-4be2-90ac-d31e603ea771 07e6925c893886916560ca6d1b504cdd {"aliquot_tag": "ALQ_b05c2768", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.RNA-Seq.S7_L008_R1.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3992893950 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 c33dd20d-f90c-4c90-80a9-5a73a584047d 42c0b54747559ab7f3f09b374881175d {"aliquot_tag": "ALQ_1d831349", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.RNA-Seq.S7_L008_R2.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R2_001.fastq.gz 4462100729 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 6a947afc-c67d-471c-8ed0-26d17a3b1ea6 9d8303d90190a6899510944711c8b36b {"aliquot_tag": "ALQ_1d831349", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.RNA-Seq.transcriptome.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.transcriptome.gdc_realn.bam 9726948279 BAM transcriptome harmonized CPTAC3 e1efaa1e-80d6-4b84-9ed2-8efa55e7e2af 40a19b3467fd6df191c7db2ae8755a60 {"aliquot_tag": "ALQ_1d831349", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.RNA-Seq.transcriptome.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.transcriptome.gdc_realn.bam 11285297272 BAM transcriptome harmonized CPTAC3 8cd9eff7-0578-4d48-b854-3ac862382396 ed4cbedfa0a453fd873bc416e0895a38 {"aliquot_tag": "ALQ_b05c2768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.WGS.A C3N-00551 LUAD WGS tissue_normal CPT0067950009 CPT0067950009.WholeGenome.RP-1303.bam 61728450587 BAM submitted_aligned CPTAC3 76f29f7f-8c65-4c4b-9e25-249a9a085a8a 3d821aa2f9be3d1007a0e5b83516ede9 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.WGS.A.hg38 C3N-00551 LUAD WGS tissue_normal CPT0067950009 cff714c1-b7ce-4726-a1b0-0985edc347de_wgs_gdc_realn.bam 89463299958 BAM harmonized CPTAC3 7bccf500-e1bc-44a4-900b-cf46fdc504d4 e3dc5b0b98736af7f73a4f3ca4058e84 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.WGS.N C3N-00551 LUAD WGS blood_normal CPT0068030002 CPT0068030002.WholeGenome.RP-1303.bam 80182733610 BAM submitted_aligned CPTAC3 179fb90e-d888-4cfc-8ee1-daed92a23886 f46997b0d7a470d1a6e41a6c526322f5 {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00551.WGS.N.hg38 C3N-00551 LUAD WGS blood_normal CPT0068030002 a63bf187-8e4a-4b33-b44a-5cf57dab7c7b_gdc_realn.bam 122941400403 BAM harmonized CPTAC3 f6d5c5d5-6e86-4028-83ed-d12604d82861 37e9a72e536dc92cb978d23f180bf93b {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00551.WGS.T C3N-00551 LUAD WGS tumor CPT0067940006 CPT0067940006.WholeGenome.RP-1303.bam 68958949448 BAM submitted_aligned CPTAC3 f9398df2-c29d-410d-bf20-2a8495d98078 0855bd2033fda194bdb0434bf67f7b2c {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.WGS.T.hg38 C3N-00551 LUAD WGS tumor CPT0067940006 2e2afbe4-e8c0-452e-b150-6527fd1b52ad_gdc_realn.bam 103622481485 BAM harmonized CPTAC3 b5490e05-b3af-43a2-a38f-3f95b2b14bb5 09827d1ebaf63bd2a9fb37b9d32101f8 {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.WXS.A C3N-00551 LUAD WXS tissue_normal CPT0067950009 CPT0067950009.WholeExome.RP-1303.bam 28482655020 BAM submitted_aligned CPTAC3 6bafc1d5-ae2e-4e5c-ab2f-ccff75f1d605 60f55010f7eeacb99ada600104c9ba9b {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.WXS.A.hg38 C3N-00551 LUAD WXS tissue_normal CPT0067950009 cff714c1-b7ce-4726-a1b0-0985edc347de_wxs_gdc_realn.bam 38752516893 BAM harmonized CPTAC3 fb197d81-9ca6-4ced-a15b-333379e68a71 e986531db41df270ef3f7bab372822d1 {"aliquot_tag": "ALQ_8d3c0ed8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00551.WXS.N C3N-00551 LUAD WXS blood_normal CPT0068030002 CPT0068030002.WholeExome.RP-1303.bam 29924478667 BAM submitted_aligned CPTAC3 1e4911b9-ccb8-4b2b-a8cd-1e88fb1a6c1e 4827292234669393a2659acdeaa42b49 {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00551.WXS.N.hg38 C3N-00551 LUAD WXS blood_normal CPT0068030002 a63bf187-8e4a-4b33-b44a-5cf57dab7c7b_gdc_realn.bam 39903652719 BAM harmonized CPTAC3 3ccc100e-9776-4d24-b055-5f60cf4f404f 58096d2351bc54796ffc446f3cb63013 {"aliquot_tag": "ALQ_44e903d1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00551.WXS.T C3N-00551 LUAD WXS tumor CPT0067940006 CPT0067940006.WholeExome.RP-1303.bam 25582851770 BAM submitted_aligned CPTAC3 e6754e8e-5f22-4f24-8523-e6409385852b 6a2c17f37d75827705fc1e830b9d562b {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00551.WXS.T.hg38 C3N-00551 LUAD WXS tumor CPT0067940006 2e2afbe4-e8c0-452e-b150-6527fd1b52ad_gdc_realn.bam 35290874314 BAM harmonized CPTAC3 6884df1c-37d4-48ad-bb75-851222cf0cf3 0f8a90f997c4d3fa5ff026e56b28ed9c {"aliquot_tag": "ALQ_20e33af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.MethArray.Green.A C3N-00552 LUAD Methylation_Array tissue_normal CPT0068130009 203028200104_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 96cd1ede-1937-4dde-91a3-ef636c7fbf37 61a7e382aa909a3bfbf6f1fe73dfef4d {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.MethArray.Green.T C3N-00552 LUAD Methylation_Array tumor CPT0068100006 202184900104_R05C01_Grn.idat 13676256 IDAT Green NA CPTAC3 d0f2ceb5-c816-4ca5-98c3-ac0b569fe6e4 25f04471862ffdfbd0e477ebc6de3b1b {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.MethArray.Red.A C3N-00552 LUAD Methylation_Array tissue_normal CPT0068130009 203028200104_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 f604f94a-bc8e-4312-9d89-b98907e24e01 470b4cacfabd1d1ab1e36787662d3dd5 {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.MethArray.Red.T C3N-00552 LUAD Methylation_Array tumor CPT0068100006 202184900104_R05C01_Red.idat 13676256 IDAT Red NA CPTAC3 52c32ef0-ebd7-4389-90ff-e36bdd547b80 71f86f50b528b02458f0e18a33524641 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.miRNA-Seq.A.hg38 C3N-00552 LUAD miRNA-Seq tissue_normal CPT0068130006 d11db476-2c34-4c56-baba-8914d4dd4f07_mirnaseq_gdc_realn.bam 234013537 BAM harmonized CPTAC3 227cc725-2668-40b2-acbc-994a98d5295b 4011b74629118c310d5c439cee04d4a5 {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.miRNA-Seq.S19_L001_R1.T C3N-00552 LUAD miRNA-Seq tumor CPT0068100009 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 161250808 BAM S19_L001_R1 submitted_unaligned CPTAC3 eab91d7b-7b48-4045-9dd9-171639850d62 d3faf5ab271d3d5c89e753995db853f9 {"aliquot_tag": "ALQ_5fc7732c", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.miRNA-Seq.S45_L008_R1.A C3N-00552 LUAD miRNA-Seq tissue_normal CPT0068130006 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L008_R1_001.unaln.bam 212786482 BAM S45_L008_R1 submitted_unaligned CPTAC3 3efd57ad-9a51-42f8-8e6b-b4e08c16a76e e482885d426f00019b9d1c658a8ebf97 {"aliquot_tag": "ALQ_88d8146d", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.miRNA-Seq.T.hg38 C3N-00552 LUAD miRNA-Seq tumor CPT0068100009 3e7169fd-38f2-47bc-9812-5fc122994e44_mirnaseq_gdc_realn.bam 180785685 BAM harmonized CPTAC3 197c142c-69cd-4f1a-8bea-ff0664394d1f 6756f6f9927554604cd8cf636fa4a3b8 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.RNA-Seq.chimeric.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.chimeric.gdc_realn.bam 97641273 BAM chimeric harmonized CPTAC3 b5a3f5c8-8d65-4749-aae0-f9d3e50b0994 41f9353f445be0eb461fd70ea67bc1d8 {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.RNA-Seq.chimeric.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.chimeric.gdc_realn.bam 27104175 BAM chimeric harmonized CPTAC3 7b6b510d-bf8f-4072-9004-9b23ce6926ad 42ea53610afc7e695d4de0e0d6629e73 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.RNA-Seq.genomic.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.genomic.gdc_realn.bam 8809570236 BAM genomic harmonized CPTAC3 edbafefc-d95c-4ef8-a775-d189672aa5eb 0dcaa2ac1c3767cafa9d98a3922895de {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.RNA-Seq.genomic.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.genomic.gdc_realn.bam 8614145561 BAM genomic harmonized CPTAC3 9f855f9c-9559-4b0c-ae88-c2d92797d649 4b089147536d87695a34f6aed1a7e347 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.RNA-Seq.S14_L004_R1.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4015266671 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 1978e5dc-257f-4e5d-9c63-ac5fc0067c91 05100d5e33b1ff26caad98be3faf04dc {"aliquot_tag": "ALQ_5fc7732c", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.RNA-Seq.S14_L004_R2.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4316107755 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 212bf3ea-e284-42bd-bd24-0247b4a534c1 0793d22cede912553043b6c9e7fd7b2a {"aliquot_tag": "ALQ_5fc7732c", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.RNA-Seq.S2_L007_R1.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R1_001.fastq.gz 3627754185 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 d76399c6-80ce-4766-a6e1-ca1b85a7ea51 a2696327cc851ccb9297f1158a1a0069 {"aliquot_tag": "ALQ_88d8146d", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.RNA-Seq.S2_L007_R2.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R2_001.fastq.gz 4053540193 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 5e971d5a-cc93-4c9f-8dbc-cc242579c8a7 c1c240343af24d316f5aee3d1889bb55 {"aliquot_tag": "ALQ_88d8146d", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.RNA-Seq.transcriptome.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.transcriptome.gdc_realn.bam 7700653199 BAM transcriptome harmonized CPTAC3 f0cdf6d7-aa6b-4959-84e6-75a81a14b736 6cae67979e56cbd7adb55f2ed46496b8 {"aliquot_tag": "ALQ_88d8146d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.RNA-Seq.transcriptome.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.transcriptome.gdc_realn.bam 11156375343 BAM transcriptome harmonized CPTAC3 0c99c22e-9ebd-43c3-8d45-e07892b7ec39 b2d95e417c9b2630805b1243064a74e8 {"aliquot_tag": "ALQ_5fc7732c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.WGS.A C3N-00552 LUAD WGS tissue_normal CPT0068130009 CPT0068130009.WholeGenome.RP-1303.bam 57071686575 BAM submitted_aligned CPTAC3 81d4f4e5-c6dd-4848-9d06-9ad4fef36961 0f2e974d37ac5d103d44e643ee7b048b {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.WGS.A.hg38 C3N-00552 LUAD WGS tissue_normal CPT0068130009 516de7b2-eddb-4b15-869a-4e1ef56abce4_wgs_gdc_realn.bam 84673363958 BAM harmonized CPTAC3 4e69d7c7-d920-4075-9d61-ca2d891ffc99 0447dcece0ed9a91b05d68832884abb2 {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.WGS.N C3N-00552 LUAD WGS blood_normal CPT0068210002 CPT0068210002.WholeGenome.RP-1303.bam 85834897525 BAM submitted_aligned CPTAC3 fb28fc91-e3b5-446c-9c92-239fe8f94528 423559acae31103948e8afe0f4a76dec {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00552.WGS.N.hg38 C3N-00552 LUAD WGS blood_normal CPT0068210002 397dec2a-b730-4e76-9f22-cf04d07980c0_gdc_realn.bam 128714272978 BAM harmonized CPTAC3 3f3922ca-65e6-425b-b9a6-6726467bd527 fbf8f4426ab4e4e053cb5fbde14ca407 {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00552.WGS.T C3N-00552 LUAD WGS tumor CPT0068100006 CPT0068100006.WholeGenome.RP-1303.bam 69273936988 BAM submitted_aligned CPTAC3 aca8b319-26fe-4823-ac07-f83040e2de62 662f6ee4f931f90cb9fae59f5bdd53ad {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.WGS.T.hg38 C3N-00552 LUAD WGS tumor CPT0068100006 08423635-fe99-41bf-96a0-cdea06897bde_gdc_realn.bam 103147443378 BAM harmonized CPTAC3 385a6831-e760-4f9d-9aaf-4a1bf92ecb7d 7c08050c3a6d2fbd9cf942de72556f87 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.WXS.A C3N-00552 LUAD WXS tissue_normal CPT0068130009 CPT0068130009.WholeExome.RP-1303.bam 44783109182 BAM submitted_aligned CPTAC3 3d424dcc-c491-478a-a2f7-80f44e83939f dfd75f881bab95c379844f0943ea3c8f {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.WXS.A.hg38 C3N-00552 LUAD WXS tissue_normal CPT0068130009 516de7b2-eddb-4b15-869a-4e1ef56abce4_wxs_gdc_realn.bam 61530696108 BAM harmonized CPTAC3 1c886217-9753-40af-84d7-204cff0792cb e6921dfc304cb41757a4a45d44d87a33 {"aliquot_tag": "ALQ_186709fc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00552.WXS.N C3N-00552 LUAD WXS blood_normal CPT0068210002 CPT0068210002.WholeExome.RP-1303.bam 27736395871 BAM submitted_aligned CPTAC3 f2d46ae9-2953-4314-ab23-efe14d64a675 37e703af8fd4098c4b26f11ae8396750 {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00552.WXS.N.hg38 C3N-00552 LUAD WXS blood_normal CPT0068210002 397dec2a-b730-4e76-9f22-cf04d07980c0_gdc_realn.bam 38053302981 BAM harmonized CPTAC3 51f324bb-f989-4ff0-965d-4f052704d411 d347a734ee6c2b0e684b433849e671b9 {"aliquot_tag": "ALQ_73e1f1ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00552.WXS.T C3N-00552 LUAD WXS tumor CPT0068100006 CPT0068100006.WholeExome.RP-1303.bam 31449721204 BAM submitted_aligned CPTAC3 2bae31d9-2842-4fb1-8753-9f1261759c29 4bf057ed71c88227d186898c85b762d3 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00552.WXS.T.hg38 C3N-00552 LUAD WXS tumor CPT0068100006 08423635-fe99-41bf-96a0-cdea06897bde_gdc_realn.bam 43612758187 BAM harmonized CPTAC3 26be535a-69cf-4890-819b-6665e10ef4e7 7b77e67d97b48be556d76d8bab4155b4 {"aliquot_tag": "ALQ_cf786ebd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.MethArray.Green.A C3N-00555 LSCC Methylation_Array tissue_normal CPT0068320009 203219650003_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 af20212a-9782-4b4c-af65-ae7e389f4f1b c3b0ffbdf8183ea7f7b41a80b4fd7d1d {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.MethArray.Green.T C3N-00555 LSCC Methylation_Array tumor CPT0068280006 202178770008_R06C01_Grn.idat 13676232 IDAT Green NA CPTAC3 8b453369-bd1f-46e0-802e-8e958f334147 dc2a11ff9c8e8ffbf683db3c0190f2b2 {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.MethArray.Red.A C3N-00555 LSCC Methylation_Array tissue_normal CPT0068320009 203219650003_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 8a8202a8-28fa-453c-8ba7-98181d7f0a88 63ef1683d905634da1fe7cf1fd1ddca3 {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.MethArray.Red.T C3N-00555 LSCC Methylation_Array tumor CPT0068280006 202178770008_R06C01_Red.idat 13676232 IDAT Red NA CPTAC3 cf9973c5-81bc-499e-bb72-a301ba90f429 fc44dfb3c9de5674c80de8ef72664a4b {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.miRNA-Seq.A.hg38 C3N-00555 LSCC miRNA-Seq tissue_normal CPT0068320006 fe335f4c-e8c3-4a1d-a4a0-b4ba0db64c53_mirnaseq_gdc_realn.bam 175632414 BAM harmonized CPTAC3 e3e3231d-68c8-4fbb-bddb-e760139bc25e 913e14b9aecfbf585792152aadc8c48f {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.miRNA-Seq.S20_L007_R1.T C3N-00555 LSCC miRNA-Seq tumor CPT0068280009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L007_R1_001.unaln.bam 192093660 BAM S20_L007_R1 submitted_unaligned CPTAC3 2d1b4a24-2bb0-4e25-a331-6a28a4f31488 f5b10b70e2d32d2b5ad259a0e62ec609 {"aliquot_tag": "ALQ_e9234a43", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.miRNA-Seq.S32_L006_R1.A C3N-00555 LSCC miRNA-Seq tissue_normal CPT0068320006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTTGA_S32_L006_R1_001.unaln.bam 157445820 BAM S32_L006_R1 submitted_unaligned CPTAC3 6aee98d8-e3b3-4b43-893d-9a3abf27bb00 d4083cdd9487071062dff8b70400b5b9 {"aliquot_tag": "ALQ_f8709cd6", "sample": "S32", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.miRNA-Seq.T.hg38 C3N-00555 LSCC miRNA-Seq tumor CPT0068280009 aec6d1ee-56a4-4b35-9303-e11742430f33_mirnaseq_gdc_realn.bam 223105127 BAM harmonized CPTAC3 4d4e1e56-e0c8-45c7-aae8-aa8f2f28482a 0ca0e5a089e703be12b88cd3f4a7bfa3 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.RNA-Seq.chimeric.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.chimeric.gdc_realn.bam 32176855 BAM chimeric harmonized CPTAC3 c3a74dca-a3a8-4d4a-8eca-99170e4a97c2 2902ec6d0a6cc505881e1f27b8f432c2 {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.RNA-Seq.chimeric.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.chimeric.gdc_realn.bam 28680551 BAM chimeric harmonized CPTAC3 5c619c6c-67fb-4284-b957-dfd4f5292c3b 24a0bafe44c2dd1e1e296ffa0ea35042 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.RNA-Seq.genomic.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.genomic.gdc_realn.bam 7118429765 BAM genomic harmonized CPTAC3 41231211-df7d-47ce-be94-b5b3652aa1cb fcd764e7c68eb72fb0fe9c1c803b5e1b {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.RNA-Seq.genomic.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.genomic.gdc_realn.bam 8891282302 BAM genomic harmonized CPTAC3 a60dce74-6cc3-4b1f-a09a-994b95ec1952 38f3fd2cc62dd951d2b11e2556961b77 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.RNA-Seq.S13_L004_R1.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 4111280734 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 e4d8ed76-350f-43c7-bc82-a3dd416e97ca 4c32b0fe0469917bd62cc37c8c98423d {"aliquot_tag": "ALQ_e9234a43", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.RNA-Seq.S13_L004_R2.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 4439030856 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 f7f1a551-b56e-4658-81ba-73c44413f456 7a92e6a807a2c28c37393640d3b14524 {"aliquot_tag": "ALQ_e9234a43", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.RNA-Seq.S24_L006_R1.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3203664411 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 c6c4d496-0c01-4a5c-acb2-dcaa4902a712 3912d5c47bc3457c50dbb271e692a568 {"aliquot_tag": "ALQ_f8709cd6", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.RNA-Seq.S24_L006_R2.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 3525966528 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 ce2c7a38-9da9-4f62-8166-3a9ec658c8cd de2cb29528b73aa218d50224bf4ca5eb {"aliquot_tag": "ALQ_f8709cd6", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.RNA-Seq.transcriptome.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.transcriptome.gdc_realn.bam 8749340232 BAM transcriptome harmonized CPTAC3 f15a19bc-6d9a-4ed7-b861-07aa7968f446 bac00c33b6e05c4e8631280843563aaf {"aliquot_tag": "ALQ_f8709cd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.RNA-Seq.transcriptome.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.transcriptome.gdc_realn.bam 12502618386 BAM transcriptome harmonized CPTAC3 78844a73-a982-4f20-aa8b-6ff91ada2a06 029d25cf7c3d12e9d974f1fe06c3eb79 {"aliquot_tag": "ALQ_e9234a43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.WGS.A C3N-00555 LSCC WGS tissue_normal CPT0068320009 CPT0068320009.WholeGenome.RP-1303.bam 52166961154 BAM submitted_aligned CPTAC3 8349e79b-b15d-4737-9db1-3e1cc4a363cb 30bc066d0730be9a22221a5f6fe914a3 {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.WGS.A.hg38 C3N-00555 LSCC WGS tissue_normal CPT0068320009 7ad4d839-7612-4d70-97ac-e0ee7920826a_wgs_gdc_realn.bam 75502390228 BAM harmonized CPTAC3 a144f99d-1738-4d9a-90c9-64eff17fb789 0f6be56988fd7a7e641c4600fea3328b {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.WGS.N C3N-00555 LSCC WGS blood_normal CPT0068390002 CPT0068390002.WholeGenome.RP-1303.bam 75133534327 BAM submitted_aligned CPTAC3 3b9952c1-110d-4a96-80a2-44efe2e70f50 1bfa040696509a47ef23ac2bbe26e506 {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00555.WGS.N.hg38 C3N-00555 LSCC WGS blood_normal CPT0068390002 8f74dadd-7534-41a3-8025-0f9fd4bd5743_gdc_realn.bam 112252028059 BAM harmonized CPTAC3 df90a8f7-91fe-4249-a664-3fb9ceb71940 873ee39ef8cff911c14e30134ecaf57d {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00555.WGS.T C3N-00555 LSCC WGS tumor CPT0068280006 CPT0068280006.WholeGenome.RP-1303.bam 76600434793 BAM submitted_aligned CPTAC3 7ea81fc2-e31a-4e80-bb4f-4062c04248cc e23b9de83f42d192b86684a6548943d0 {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.WGS.T.hg38 C3N-00555 LSCC WGS tumor CPT0068280006 415e2d1f-8d86-4cd3-bdd2-45526a993d5d_gdc_realn.bam 114651923867 BAM harmonized CPTAC3 6dce2979-1a93-400d-a979-7c209f140b4a 6a09e9b2241b82547ad76d07a2d089ea {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.WXS.A C3N-00555 LSCC WXS tissue_normal CPT0068320009 CPT0068320009.WholeExome.RP-1303.bam 27573974634 BAM submitted_aligned CPTAC3 0b83c46f-2ed5-495a-90de-99db1452b517 eaa873bbd2b33ef60b957d8dfd9e199c {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.WXS.A.hg38 C3N-00555 LSCC WXS tissue_normal CPT0068320009 7ad4d839-7612-4d70-97ac-e0ee7920826a_wxs_gdc_realn.bam 37265494530 BAM harmonized CPTAC3 8a45c647-2669-43dd-ad83-1296b66648fd fbfbb3ad22f1d129c26fa2575a5767e6 {"aliquot_tag": "ALQ_68cf8147", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00555.WXS.N C3N-00555 LSCC WXS blood_normal CPT0068390002 CPT0068390002.WholeExome.RP-1303.bam 28309802164 BAM submitted_aligned CPTAC3 292581e7-bcd7-4da5-9676-c689095d3fb3 24c510b2e76f5c4eb8b5e3da13c4897a {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00555.WXS.N.hg38 C3N-00555 LSCC WXS blood_normal CPT0068390002 8f74dadd-7534-41a3-8025-0f9fd4bd5743_gdc_realn.bam 38351489593 BAM harmonized CPTAC3 dbde810d-19ef-4825-8f83-f93f62b822d6 094a609a3286f5c6a94d6d8eba4f5075 {"aliquot_tag": "ALQ_88cd69de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00555.WXS.T C3N-00555 LSCC WXS tumor CPT0068280006 CPT0068280006.WholeExome.RP-1303.bam 34969716772 BAM submitted_aligned CPTAC3 8716f6ad-e0c5-4541-8a75-f058c7c9acb9 3c81864408a0776a44ad67045b94bb9d {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00555.WXS.T.hg38 C3N-00555 LSCC WXS tumor CPT0068280006 415e2d1f-8d86-4cd3-bdd2-45526a993d5d_gdc_realn.bam 47246801233 BAM harmonized CPTAC3 f812e7c5-876c-4090-902d-2f2fede73a97 fa030658b2b756735eb5dea9b08a8bd6 {"aliquot_tag": "ALQ_799c57d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.MethArray.Green.A C3N-00556 LUAD Methylation_Array tissue_normal CPT0090720009 203027390040_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 4546ffb9-09ff-479e-a613-efd54284f386 5850a8276bbc4f356f3cbcd92eab2e71 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.MethArray.Green.T C3N-00556 LUAD Methylation_Array tumor CPT0090700009 202234380094_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 5e449913-e377-4663-86dd-042d6218c31f 78970970ad770218008f28ed487b87fc {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.MethArray.Red.A C3N-00556 LUAD Methylation_Array tissue_normal CPT0090720009 203027390040_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 f62df62e-db1a-4ba4-b1b8-461eb4e96502 a93a39bd9ad012c6ff299afd2aceb116 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.MethArray.Red.T C3N-00556 LUAD Methylation_Array tumor CPT0090700009 202234380094_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cd9b7fab-0864-478f-be51-9180cfe63709 01fa9342696e308845d2325ea0f0c13b {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.miRNA-Seq.A.hg38 C3N-00556 LUAD miRNA-Seq tissue_normal CPT0090720006 1120b1cd-95aa-4daa-86a8-db557109f852_mirnaseq_gdc_realn.bam 224845280 BAM harmonized CPTAC3 b13ab653-1138-4e48-9670-ba8985693ff2 766f1d930b84901a7ed55f90f0fcb954 {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.miRNA-Seq.S47_L003_R1.T C3N-00556 LUAD miRNA-Seq tumor CPT0090700006 181119_UNC31-K00269_0165_AH27WCBBXY_GAGTGG_S47_L003_R1_001.unaln.bam 196535694 BAM S47_L003_R1 submitted_unaligned CPTAC3 c53b9b21-5b84-40d9-b267-04175e79b93c b87193d858ea26563021d438e77619a0 {"aliquot_tag": "ALQ_f3eed16b", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.miRNA-Seq.S7_L005_R1.A C3N-00556 LUAD miRNA-Seq tissue_normal CPT0090720006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L005_R1_001.unaln.bam 200018488 BAM S7_L005_R1 submitted_unaligned CPTAC3 86b6da91-a7c8-460b-a0d9-6488e5d4a729 2a934695bea5b2b42caed89d1f5cb1da {"aliquot_tag": "ALQ_892e820b", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.miRNA-Seq.T.hg38 C3N-00556 LUAD miRNA-Seq tumor CPT0090700006 e304251e-650c-4d99-8265-64fd84f5e9e1_mirnaseq_gdc_realn.bam 213316224 BAM harmonized CPTAC3 0f671e51-df47-4e2b-b779-3ed0c917163c e14d5a3dbf00b516d6a27abb45bb0e4a {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.RNA-Seq.chimeric.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.chimeric.gdc_realn.bam 76983738 BAM chimeric harmonized CPTAC3 448838e2-2805-4f6b-9c82-8d8e9dd2e513 7f04aa302d7deb46e9fab45c28658574 {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.RNA-Seq.chimeric.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.chimeric.gdc_realn.bam 189455309 BAM chimeric harmonized CPTAC3 25ca107e-ed68-45e0-9b5b-2fd357bc8b6a 4f462e7a071fd497734fbcdc12839cc4 {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.RNA-Seq.genomic.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.genomic.gdc_realn.bam 7581510794 BAM genomic harmonized CPTAC3 0f33d1ed-eaf0-413d-8c7c-f0b863f99cb7 9043584f70aeb5ace73eda73d0214105 {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.RNA-Seq.genomic.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.genomic.gdc_realn.bam 9521617056 BAM genomic harmonized CPTAC3 1151bc78-8658-429d-8e61-3558e42ffa6a 3258edd8ce1b94c98bc90222999fc011 {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.RNA-Seq.S12_L004_R1.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4275556766 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 be53b4b8-e3eb-41a4-86ef-2f8062932be9 90260db4febc28e0b30007004cd2bdc3 {"aliquot_tag": "ALQ_f3eed16b", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.RNA-Seq.S12_L004_R2.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4761788101 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 911a1ff5-72f1-4336-8d5a-99f5eaf37537 f5681da3403d3926e607e67cf6cc1247 {"aliquot_tag": "ALQ_f3eed16b", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.RNA-Seq.S14_L004_R1.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R1_001.fastq.gz 3727621382 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 bb0080ab-f7a2-4cf2-ba90-f7572bee1ef0 4fc4216ed2b79ca690751e8018395e31 {"aliquot_tag": "ALQ_892e820b", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.RNA-Seq.S14_L004_R2.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R2_001.fastq.gz 3981356048 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 6b241235-a041-45e9-a300-c68d3d1b8898 3cb27f40e0386deed8f1c4f1758d9007 {"aliquot_tag": "ALQ_892e820b", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.RNA-Seq.transcriptome.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.transcriptome.gdc_realn.bam 8464616100 BAM transcriptome harmonized CPTAC3 2a876d2c-2542-4f0b-bf2f-93c4bf97587e accc3f31eed55ca4cdadf67dab6d8fca {"aliquot_tag": "ALQ_892e820b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.RNA-Seq.transcriptome.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.transcriptome.gdc_realn.bam 11520685178 BAM transcriptome harmonized CPTAC3 a28d1f9b-cfde-4bff-b437-c9b9e0ea6896 e4bdbae05538e8a8607159b3bdba6754 {"aliquot_tag": "ALQ_f3eed16b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.WGS.A C3N-00556 LUAD WGS tissue_normal CPT0090720009 CPT0090720009.WholeGenome.RP-1303.bam 58317699130 BAM submitted_aligned CPTAC3 fb14a2ea-3eaa-496c-8bd6-18b2533783c2 4769b440741ca68685997626cdfd889a {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.WGS.A.hg38 C3N-00556 LUAD WGS tissue_normal CPT0090720009 d9194d74-2daa-4404-80b7-79fbd4ec2ba1_wgs_gdc_realn.bam 85911873931 BAM harmonized CPTAC3 120fbc7e-c843-483a-95c0-953f3fca0c2f 588f00ba67015391b1aef7bd5f178929 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.WGS.N C3N-00556 LUAD WGS blood_normal CPT0090800002 CPT0090800002.WholeGenome.RP-1303.bam 63279552729 BAM submitted_aligned CPTAC3 b277a958-6f3c-4aae-8beb-b7d78f89b31b 9ecee01496e68af236734899e94ebc63 {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00556.WGS.N.hg38 C3N-00556 LUAD WGS blood_normal CPT0090800002 b0e167ba-7294-454e-bb50-8924f1495898_wgs_gdc_realn.bam 94439292998 BAM harmonized CPTAC3 b7a4651a-a059-4b4e-955f-f94e03509855 d405532f854058e052b72d0dcfab24fd {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00556.WGS.T C3N-00556 LUAD WGS tumor CPT0090700009 CPT0090700009.WholeGenome.RP-1303.bam 65327480044 BAM submitted_aligned CPTAC3 dc6a2458-14b1-4e9b-808f-16b961d722b3 1dd03349e26db4f454553330688b8f74 {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.WGS.T.hg38 C3N-00556 LUAD WGS tumor CPT0090700009 03737151-19b0-46c6-a74d-cdc16b25f2cb_wgs_gdc_realn.bam 96817508581 BAM harmonized CPTAC3 8c103a65-5a60-4335-9cf0-651614b6a4e2 c1eeebddfa49d32a304ff93218fbdd14 {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.WXS.A C3N-00556 LUAD WXS tissue_normal CPT0090720009 CPT0090720009.WholeExome.RP-1303.bam 37921738244 BAM submitted_aligned CPTAC3 cf1a6e46-9778-42b9-8fb2-213ac104c2c8 464a31c1c358fe6a8bbfd1bc986dd8a5 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.WXS.A.hg38 C3N-00556 LUAD WXS tissue_normal CPT0090720009 d9194d74-2daa-4404-80b7-79fbd4ec2ba1_wxs_gdc_realn.bam 51119609551 BAM harmonized CPTAC3 a8ff62af-e125-4e22-8ae7-b048d02e814c e449bcb25776995df02f34e4e197bcc6 {"aliquot_tag": "ALQ_19919f9a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00556.WXS.N C3N-00556 LUAD WXS blood_normal CPT0090800002 CPT0090800002.WholeExome.RP-1303.bam 35803406649 BAM submitted_aligned CPTAC3 9bd493da-de76-4bc7-8d41-c33cf271310b a91ab22207b2e3d2540f8b49fcdd50d9 {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00556.WXS.N.hg38 C3N-00556 LUAD WXS blood_normal CPT0090800002 b0e167ba-7294-454e-bb50-8924f1495898_wxs_gdc_realn.bam 47398009746 BAM harmonized CPTAC3 5018bc92-4cf5-417b-bef0-9cd7e12436cf cf8d2366def0d4a3013993a421b3dd0e {"aliquot_tag": "ALQ_5d5a7a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00556.WXS.T C3N-00556 LUAD WXS tumor CPT0090700009 CPT0090700009.WholeExome.RP-1303.bam 28587805209 BAM submitted_aligned CPTAC3 d065073f-6241-4d02-8a5f-1f59d0ab2c63 2489080bcfb075e3b55eef2adbe83a12 {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00556.WXS.T.hg38 C3N-00556 LUAD WXS tumor CPT0090700009 03737151-19b0-46c6-a74d-cdc16b25f2cb_wxs_gdc_realn.bam 39235543242 BAM harmonized CPTAC3 8b7336d8-4946-4a96-bff9-5ba516019f15 526f9342e45c38a1f6c0bb32d76698fa {"aliquot_tag": "ALQ_6351ccfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.MethArray.Green.A C3N-00559 LUAD Methylation_Array tissue_normal CPT0068650009 203028200093_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8570fa01-d56e-4805-9527-2dcd4c21424a 0a3b70c2dc7f2d2938a460206cf4fb32 {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.MethArray.Green.T C3N-00559 LUAD Methylation_Array tumor CPT0068610009 202176290046_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 607cb6ce-fb7c-4429-a6e4-4d60eb00fbd7 dff3030d550f32a4c72ec89c00dc0a3a {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.MethArray.Red.A C3N-00559 LUAD Methylation_Array tissue_normal CPT0068650009 203028200093_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 225f8e89-643e-4033-aa98-eed7a20270d7 5f81b02697fb66576f926354e719b327 {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.MethArray.Red.T C3N-00559 LUAD Methylation_Array tumor CPT0068610009 202176290046_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 7ceb0e1f-4b48-496f-b94c-18ad4fa4fb06 e204588555219b1c36b446ab15dc3e13 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.miRNA-Seq.A.hg38 C3N-00559 LUAD miRNA-Seq tissue_normal CPT0068650006 ed1c5ccb-b922-49c7-ae22-09e437596f3a_mirnaseq_gdc_realn.bam 217868983 BAM harmonized CPTAC3 3a9cdb02-9408-426e-a94c-e54cdb76910b fe594d40890cc003ddfb0af7bedbba77 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.miRNA-Seq.S34_L007_R1.T C3N-00559 LUAD miRNA-Seq tumor CPT0068610006 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L007_R1_001.unaln.bam 246231724 BAM S34_L007_R1 submitted_unaligned CPTAC3 ed7fbe3b-67e3-4f8f-a9de-df276c92667b bf2623ff55c4af4313cb53c094f4c4a0 {"aliquot_tag": "ALQ_ef1d77b5", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.miRNA-Seq.S46_L008_R1.A C3N-00559 LUAD miRNA-Seq tissue_normal CPT0068650006 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L008_R1_001.unaln.bam 194689645 BAM S46_L008_R1 submitted_unaligned CPTAC3 4069ae0a-4c07-4d14-a581-2be84b054edb f4bdee938180fde9e06cf5385d4ea29f {"aliquot_tag": "ALQ_1a9dd175", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.miRNA-Seq.T.hg38 C3N-00559 LUAD miRNA-Seq tumor CPT0068610006 7f2b8065-6a58-4035-986e-00388244d9c8_mirnaseq_gdc_realn.bam 261630983 BAM harmonized CPTAC3 cf519ce2-5fa2-48f5-9e00-b87f8e316d99 7527eb606eb429a788a8b08c1c8b269a {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.RNA-Seq.chimeric.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.chimeric.gdc_realn.bam 119268643 BAM chimeric harmonized CPTAC3 25376980-45f8-42f9-8ec6-fc97481eb572 b1f926950e871bb24d89b288e08780e2 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.RNA-Seq.chimeric.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.chimeric.gdc_realn.bam 179623357 BAM chimeric harmonized CPTAC3 f59c8d4e-da8a-4c58-b864-d290b533975f 05aaed4ac7f88f46d1bbbfbaefc3c1e9 {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.RNA-Seq.genomic.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.genomic.gdc_realn.bam 9022437638 BAM genomic harmonized CPTAC3 f40ec376-0bf3-4500-969f-c2485375a5f8 28aa5aa4573ea8fced852ad762af82f8 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.RNA-Seq.genomic.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.genomic.gdc_realn.bam 8214519587 BAM genomic harmonized CPTAC3 7e10c912-2d98-4dec-95e6-2f2d8ac44f42 df274e310881a9e89aac93bc32666af5 {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.RNA-Seq.S1_L007_R1.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R1_001.fastq.gz 4004706735 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 8e6188ee-81c8-435f-a71b-b8608e15a768 4a8ba3cf38d71121524c9b8e7c5fb7df {"aliquot_tag": "ALQ_1a9dd175", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.RNA-Seq.S1_L007_R2.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R2_001.fastq.gz 4396700968 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 40f2783e-a257-4a4c-ac79-c0c4b885ad4e 6f344cf30bad924f122716377f3daa1c {"aliquot_tag": "ALQ_1a9dd175", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.RNA-Seq.S22_L007_R1.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R1_001.fastq.gz 4053687904 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 35ac3e77-6860-42e8-a022-cb2889c74118 f25151a2d9a4fcbf9735da27a3c6b281 {"aliquot_tag": "ALQ_ef1d77b5", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.RNA-Seq.S22_L007_R2.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R2_001.fastq.gz 4373524532 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 92fffc3f-b951-4bc5-acf4-dade2089fa7f 19cb370f4046a8e576c89e43b513797e {"aliquot_tag": "ALQ_ef1d77b5", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.RNA-Seq.transcriptome.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.transcriptome.gdc_realn.bam 8899432370 BAM transcriptome harmonized CPTAC3 98c384b0-1a03-46e2-81b1-ebf61fa812c1 77720e0cf4ca98ae0b33e3bf4a3a42d1 {"aliquot_tag": "ALQ_1a9dd175", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.RNA-Seq.transcriptome.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.transcriptome.gdc_realn.bam 9187519192 BAM transcriptome harmonized CPTAC3 87fe33c2-8c74-4fff-8e89-d979fb286f1d ee60ee8f05a67963fbf7b5e4a53d1a1e {"aliquot_tag": "ALQ_ef1d77b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.WGS.A C3N-00559 LUAD WGS tissue_normal CPT0068650009 CPT0068650009.WholeGenome.RP-1303.bam 59112722658 BAM submitted_aligned CPTAC3 50e50514-c147-48e7-afea-64a98bbee984 3d8d38f56d904f02d8fe416cadb97b1f {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.WGS.A.hg38 C3N-00559 LUAD WGS tissue_normal CPT0068650009 69d53528-e5a2-4223-8504-be61bb8daad5_wgs_gdc_realn.bam 89645944717 BAM harmonized CPTAC3 0f85744b-96cf-4ef8-aabe-464f7fdddc82 1cd52154c4fbc3761c24c2b1c3d871ca {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.WGS.N C3N-00559 LUAD WGS blood_normal CPT0068730002 CPT0068730002.WholeGenome.RP-1303.bam 75937411224 BAM submitted_aligned CPTAC3 92f3e7ed-560c-46d2-a2a5-9548a2376d6e ebb657acf7aff7dbabafdf3b0d344dae {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00559.WGS.N.hg38 C3N-00559 LUAD WGS blood_normal CPT0068730002 7685dda3-cc9a-4907-af73-acc21efc3583_gdc_realn.bam 114031657078 BAM harmonized CPTAC3 03d6029d-2a50-440e-9dc5-1799daed8b8f 0095fe41040e4b98a4e597b040d8372d {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00559.WGS.T C3N-00559 LUAD WGS tumor CPT0068610009 CPT0068610009.WholeGenome.RP-1303.bam 87840611066 BAM submitted_aligned CPTAC3 5590fbb1-288b-4e5a-9680-1023d9761dd2 2b4a93b7988ebadccf917ebd1c58c908 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.WGS.T.hg38 C3N-00559 LUAD WGS tumor CPT0068610009 65bfd2f9-61ca-429d-943c-2d0989e04e6b_gdc_realn.bam 130518646424 BAM harmonized CPTAC3 0b19485a-7afb-48dd-b2ca-1e2dc3cdf1aa 59522353bf0a10ea1692f6be2d015fa9 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.WXS.A C3N-00559 LUAD WXS tissue_normal CPT0068650009 CPT0068650009.WholeExome.RP-1303.bam 29679144929 BAM submitted_aligned CPTAC3 bc69a84e-4e09-417e-9531-6bb079a0f3e2 6101287d58629ce47073e670a411ae94 {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.WXS.A.hg38 C3N-00559 LUAD WXS tissue_normal CPT0068650009 69d53528-e5a2-4223-8504-be61bb8daad5_wxs_gdc_realn.bam 40944868022 BAM harmonized CPTAC3 b2a51d3c-c4f3-47a8-92dc-19a20cb01217 480c62f80b903c0e92882f18be5aa42a {"aliquot_tag": "ALQ_8a22cce4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00559.WXS.N C3N-00559 LUAD WXS blood_normal CPT0068730002 CPT0068730002.WholeExome.RP-1303.bam 34788274835 BAM submitted_aligned CPTAC3 f40a1574-c485-4960-8aa6-86fdb200145e e36a6936a0fac28107b37b5356ca44f1 {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00559.WXS.N.hg38 C3N-00559 LUAD WXS blood_normal CPT0068730002 7685dda3-cc9a-4907-af73-acc21efc3583_gdc_realn.bam 47945600076 BAM harmonized CPTAC3 7ec50742-f1e3-4b2b-b681-f676f17c3e47 b980d74c8e015a5cff48eabf3dde12bc {"aliquot_tag": "ALQ_59ec3369", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00559.WXS.T C3N-00559 LUAD WXS tumor CPT0068610009 CPT0068610009.WholeExome.RP-1303.bam 51334658480 BAM submitted_aligned CPTAC3 9d84def2-9572-4634-9b3e-6e69f36c2b9e c65cee5ec049cf5b3a7ea44f50ea553b {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00559.WXS.T.hg38 C3N-00559 LUAD WXS tumor CPT0068610009 65bfd2f9-61ca-429d-943c-2d0989e04e6b_gdc_realn.bam 70598826119 BAM harmonized CPTAC3 3be352f5-36d2-4123-ab6d-b4d416b82fb2 98a2d7646f1a10bd2d318d1135b69b41 {"aliquot_tag": "ALQ_7fa26a24", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.MethArray.Green.A C3N-00560 LUAD Methylation_Array tissue_normal CPT0068830009 203027390028_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a5f181f7-2309-4904-87ab-366a20d6f6e5 b59e0d16a3899abf6edc364db92b1641 {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.MethArray.Green.T C3N-00560 LUAD Methylation_Array tumor CPT0068800006 202184990057_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2b67d971-22dc-4f08-a18c-8c24ab9e7401 38f1fdcf03f26cbcd009b88cb2bc3c00 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.MethArray.Red.A C3N-00560 LUAD Methylation_Array tissue_normal CPT0068830009 203027390028_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 78816cf8-f183-438a-b634-9bd5c2d41b56 b834d5fd30ba3d1e874656d7b151738b {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.MethArray.Red.T C3N-00560 LUAD Methylation_Array tumor CPT0068800006 202184990057_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 362af513-c33d-446c-980e-f066785a8e7e f991c0aee492d8735f5ddb5d647fd1ac {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.miRNA-Seq.A.hg38 C3N-00560 LUAD miRNA-Seq tissue_normal CPT0068830006 fcac68e7-15d3-401d-89f0-53ea2322eb9f_mirnaseq_gdc_realn.bam 254328288 BAM harmonized CPTAC3 e81164dd-a046-4e69-b47a-8f239f4f9fda 28c825ec1cd211685c826223fd63a790 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.miRNA-Seq.S45_L005_R1.T C3N-00560 LUAD miRNA-Seq tumor CPT0068800009 181119_UNC31-K00269_0165_AH27WCBBXY_GTTTCG_S45_L005_R1_001.unaln.bam 217548017 BAM S45_L005_R1 submitted_unaligned CPTAC3 b23e5ada-470b-4542-8b58-d377d7b8b1b7 500742a16c71095edb97e40d2d15669e {"aliquot_tag": "ALQ_78c822e4", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.miRNA-Seq.S47_L007_R1.A C3N-00560 LUAD miRNA-Seq tissue_normal CPT0068830006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L007_R1_001.unaln.bam 229378323 BAM S47_L007_R1 submitted_unaligned CPTAC3 d7c5598e-100c-4a64-a064-ad6f6b15747f 7b4a09b4c1c4f57d64ed6ec1780b2e5c {"aliquot_tag": "ALQ_afd745a5", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.miRNA-Seq.T.hg38 C3N-00560 LUAD miRNA-Seq tumor CPT0068800009 7918ebab-4d6b-4fc2-a19e-4292608ea22a_mirnaseq_gdc_realn.bam 239298777 BAM harmonized CPTAC3 fc44dd4c-d6ee-46e1-af9e-cb38bc9890a6 56c45decf999e195bbcc4990530900ae {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.RNA-Seq.chimeric.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.chimeric.gdc_realn.bam 157084628 BAM chimeric harmonized CPTAC3 e9db2c42-b5fb-47e2-b60f-c1d2bbc0adbd 92714b1db185040d69bb21a083da0bc5 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.RNA-Seq.chimeric.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.chimeric.gdc_realn.bam 27472325 BAM chimeric harmonized CPTAC3 87bc9b84-8826-4c41-a6fb-63a017552e44 7f1d58f357aeb41f1accc10df82f857e {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.RNA-Seq.genomic.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.genomic.gdc_realn.bam 8765917970 BAM genomic harmonized CPTAC3 1c1b0f0d-d739-4d51-85a7-85aa3301bb8d b7dc10b781d480cf01f5dc473de55e00 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.RNA-Seq.genomic.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.genomic.gdc_realn.bam 7636550362 BAM genomic harmonized CPTAC3 877414cc-b7f4-4802-a5c7-4d966ad11471 6999c545d551142457d4404c39d42b28 {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.RNA-Seq.S16_L004_R1.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3766620353 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 46bd0f61-6336-4718-87c9-4321fca9d1c7 5b766036e12d20568365d46d377e5491 {"aliquot_tag": "ALQ_78c822e4", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.RNA-Seq.S16_L004_R2.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R2_001.fastq.gz 3962085780 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 f9f777c8-4adc-4d33-a1af-586195c51863 367502574bb9e82528f100bacedb682c {"aliquot_tag": "ALQ_78c822e4", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.RNA-Seq.S4_L007_R1.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R1_001.fastq.gz 4108649064 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 bb38f2f8-49b4-452c-a46c-1225fa3c06bc a6ad770a1a8085b6dbfee41049feb71a {"aliquot_tag": "ALQ_afd745a5", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.RNA-Seq.S4_L007_R2.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R2_001.fastq.gz 4490060201 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 3702c568-757a-4c5f-824d-60f359a3e47a 72b27fe82536d822f361a689a541ee23 {"aliquot_tag": "ALQ_afd745a5", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.RNA-Seq.transcriptome.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.transcriptome.gdc_realn.bam 10139949654 BAM transcriptome harmonized CPTAC3 ec96ca67-c315-449a-b408-1fdf1ff3a8f2 5ef3fa029409825eb9c2cb91e388db93 {"aliquot_tag": "ALQ_afd745a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.RNA-Seq.transcriptome.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.transcriptome.gdc_realn.bam 10692603673 BAM transcriptome harmonized CPTAC3 e152add2-e9a0-494d-b7ea-82c460e6c3d7 19137fcd71d7c330b2585f207d94fc91 {"aliquot_tag": "ALQ_78c822e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.Targeted.T C3N-00560 LUAD Targeted_Sequencing tumor CPT0068800006 CPT0068800006.CustomSelection.RP-1303.PDO-18786.bam 4019311723 BAM submitted_aligned CPTAC3 2c5f8866-5e5f-4715-9ea9-9bc7c611b436 506a39fc58756128b7977bb2e230de8e {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.Targeted.T.hg38 C3N-00560 LUAD Targeted_Sequencing tumor CPT0068800006 5cc34d69-b52a-41a7-bf06-e5d2bce79815_targetedsequencing_gdc_realn.bam 5604339593 BAM harmonized CPTAC3 1201e49a-0a06-4510-bca1-01cf97f31de3 a4a2dc8d14088417477766a9b83a85e5 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.WGS.A C3N-00560 LUAD WGS tissue_normal CPT0068830009 CPT0068830009.WholeGenome.RP-1303.bam 53735348223 BAM submitted_aligned CPTAC3 a2167dd6-f503-4d7c-9237-d97dfd2cb759 c45f4ea67f19b12668ca7b141a5ae747 {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.WGS.A.hg38 C3N-00560 LUAD WGS tissue_normal CPT0068830009 caf79275-5bf0-4f8a-9467-4ac0fa42ab41_wgs_gdc_realn.bam 78758999741 BAM harmonized CPTAC3 1bb32722-76cf-48ca-9b63-afc27bfea961 4cedbaafcbb4dcf29d5e81941bc5fece {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.WGS.N C3N-00560 LUAD WGS blood_normal CPT0068910002 CPT0068910002.WholeGenome.RP-1303.bam 75830719033 BAM submitted_aligned CPTAC3 1243d38a-2e75-4377-82e7-ecf5fa2210f0 3b53c1252bf3afd1169cf8c58d7c66fb {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00560.WGS.N.hg38 C3N-00560 LUAD WGS blood_normal CPT0068910002 4bf3027a-6c8c-4b4c-9fe9-9b9b9010d877_gdc_realn.bam 114554301344 BAM harmonized CPTAC3 7f806b1f-28d1-42a7-b1f7-0becce284c16 954c7339963cf0120db4fb9e19cca5fc {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00560.WGS.T C3N-00560 LUAD WGS tumor CPT0068800006 CPT0068800006.WholeGenome.RP-1303.bam 72783914458 BAM submitted_aligned CPTAC3 60fa2f2b-328e-4417-b042-800af86bdd4e 9755e0773b1eda6b16ec2df2459d4b69 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.WGS.T.hg38 C3N-00560 LUAD WGS tumor CPT0068800006 5cc34d69-b52a-41a7-bf06-e5d2bce79815_gdc_realn.bam 109072923843 BAM harmonized CPTAC3 9265e351-74cb-49a8-9169-be03ce3add75 a9a74825eb13f330ba337aacf34d05cc {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.WXS.A C3N-00560 LUAD WXS tissue_normal CPT0068830009 CPT0068830009.WholeExome.RP-1303.bam 39016462855 BAM submitted_aligned CPTAC3 50e111be-2dec-430f-997d-8c68443219e9 1761b85536e374554f75ba5e35ba7e9b {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.WXS.A.hg38 C3N-00560 LUAD WXS tissue_normal CPT0068830009 caf79275-5bf0-4f8a-9467-4ac0fa42ab41_wxs_gdc_realn.bam 54106976681 BAM harmonized CPTAC3 d246405b-ef7e-422c-b5ce-7057da700d82 b33cbc45f209ff6aa5556e185ccb8b64 {"aliquot_tag": "ALQ_3f685834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00560.WXS.N C3N-00560 LUAD WXS blood_normal CPT0068910002 CPT0068910002.WholeExome.RP-1303.bam 31510208896 BAM submitted_aligned CPTAC3 f4f2fc61-f653-4952-b7d3-55c279b16d96 29d9c49b2d80640c90cd2ef911359cfb {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00560.WXS.N.hg38 C3N-00560 LUAD WXS blood_normal CPT0068910002 4bf3027a-6c8c-4b4c-9fe9-9b9b9010d877_gdc_realn.bam 43028891230 BAM harmonized CPTAC3 accd545e-f33e-4ad8-9a31-1249a5a51290 6aa8c773c3e36f3a6fd69a612f470a0f {"aliquot_tag": "ALQ_19260179", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00560.WXS.T C3N-00560 LUAD WXS tumor CPT0068800006 CPT0068800006.WholeExome.RP-1303.bam 31830009366 BAM submitted_aligned CPTAC3 a5a33c81-01bd-4877-8ae4-7c993da8beb1 d4dc791351a0cff3ec65e0ad8b5307c3 {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00560.WXS.T.hg38 C3N-00560 LUAD WXS tumor CPT0068800006 5cc34d69-b52a-41a7-bf06-e5d2bce79815_gdc_realn.bam 43225649586 BAM harmonized CPTAC3 8986d3b8-c817-4f96-a9e3-3842719e0735 752bc62fe032cad0e8e1dc5c6ed5cdaa {"aliquot_tag": "ALQ_e8773f75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.MethArray.Green.A C3N-00572 LUAD Methylation_Array tissue_normal CPT0015420009 203027390081_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e7e2ec0-a1a4-4e99-8d4e-c7b4ca89d7b7 4dbf23c4662299d5e2483805b859a5d4 {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.MethArray.Green.T C3N-00572 LUAD Methylation_Array tumor CPT0015410009 202184990063_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 18879d62-0793-4957-8a39-723523c1ce19 8374036d93dde2859437b79cf4b03e18 {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.MethArray.Red.A C3N-00572 LUAD Methylation_Array tissue_normal CPT0015420009 203027390081_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 8c3919cc-f5d5-4d92-9758-49f99255b571 cdcbd21b3c6aefb92b17b96bf58507cc {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.MethArray.Red.T C3N-00572 LUAD Methylation_Array tumor CPT0015410009 202184990063_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 30b7b94b-97ee-49b2-995a-a4e1a2a5e443 12acf670b5e90b60152f56733694962b {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.miRNA-Seq.A.hg38 C3N-00572 LUAD miRNA-Seq tissue_normal CPT0015420006 1ba9ebfe-3899-4f6c-b63d-c1e1589d53ab_mirnaseq_gdc_realn.bam 301564600 BAM harmonized CPTAC3 5e070422-8d39-4967-8122-697331c4ad28 f3529a8d1950e273ecde691064a19e83 {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.miRNA-Seq.S1_L003_R1.T C3N-00572 LUAD miRNA-Seq tumor CPT0015410006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L003_R1_001.unaln.bam 224652129 BAM S1_L003_R1 submitted_unaligned CPTAC3 7a4b6622-b155-4c8e-9ebc-7d5700f8ca1d a8062abebe175a11ad5968b982f951b3 {"aliquot_tag": "ALQ_c9c7be67", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.miRNA-Seq.S39_L002_R1.A C3N-00572 LUAD miRNA-Seq tissue_normal CPT0015420006 181108_UNC31-K00269_0163_BH23TVBBXY_CTATAC_S39_L002_R1_001.unaln.bam 263683204 BAM S39_L002_R1 submitted_unaligned CPTAC3 ad3a1d84-3031-4340-b552-02147c92037b add2b4868972621bdb0b2f46f1d2ea5f {"aliquot_tag": "ALQ_8e67c4b7", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.miRNA-Seq.T.hg38 C3N-00572 LUAD miRNA-Seq tumor CPT0015410006 a8b1dd01-2e94-4b84-a9c2-2ad495f2ecf4_mirnaseq_gdc_realn.bam 242021283 BAM harmonized CPTAC3 2e8b8488-9cb8-4e0b-8563-3f539f79ef41 8e961e3d280305872653fa9d64faf5f6 {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.RNA-Seq.chimeric.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.chimeric.gdc_realn.bam 37603214 BAM chimeric harmonized CPTAC3 8bc2f3db-0009-4cfd-ba13-e5f162472e28 c26adf7de39ec3e4191b8564e6c610d2 {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.RNA-Seq.chimeric.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.chimeric.gdc_realn.bam 52234049 BAM chimeric harmonized CPTAC3 74c870b4-0a47-488b-baae-6339ff118208 c25791462e140779a52df7e6033f00df {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.RNA-Seq.genomic.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.genomic.gdc_realn.bam 5862977929 BAM genomic harmonized CPTAC3 e70b66ef-c7a5-47e5-940c-230d917ba77b c18a9c3e0e31b0c1114f973cb3659a7c {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.RNA-Seq.genomic.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.genomic.gdc_realn.bam 8333243935 BAM genomic harmonized CPTAC3 b4a1adbd-50ac-44b6-b8af-d361486715a3 5865b03edf0243a84b1e57bac7a4674a {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.RNA-Seq.S20_L006_R1.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3050852055 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 59abf2ce-a0c0-4e7d-a98c-a08a1b9943cc 39f9aa0b02e056f52b51dc1adf7c957d {"aliquot_tag": "ALQ_8e67c4b7", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.RNA-Seq.S20_L006_R2.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3236795328 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 6ea15efc-a8d7-4099-922d-fc62d572aeab 7531f65326c093448c8f6ea972b4e464 {"aliquot_tag": "ALQ_8e67c4b7", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.RNA-Seq.S3_L001_R1.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R1_001.fastq.gz 3756268296 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 2ef79d70-28f8-4ec8-bbff-4ba04ac34831 5ec0f27cf71d7856a536b67f89575c4f {"aliquot_tag": "ALQ_c9c7be67", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.RNA-Seq.S3_L001_R2.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R2_001.fastq.gz 4279080356 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 57f41a92-2a2b-4673-b1d5-3f2a298dd09f a19b6372a09c815d56da41dc9a07bbf4 {"aliquot_tag": "ALQ_c9c7be67", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.RNA-Seq.transcriptome.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.transcriptome.gdc_realn.bam 7262801407 BAM transcriptome harmonized CPTAC3 ab17b5a6-4fd7-4c95-be66-c68d36fae82c 6dde7e793d7fb264cbf136b1367213f8 {"aliquot_tag": "ALQ_8e67c4b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.RNA-Seq.transcriptome.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.transcriptome.gdc_realn.bam 12930714956 BAM transcriptome harmonized CPTAC3 dcb0d079-ea4a-4926-8bea-e67156166e54 09f54a5c8f1f482eb6bbcd6d2e03dcc4 {"aliquot_tag": "ALQ_c9c7be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.WGS.A C3N-00572 LUAD WGS tissue_normal CPT0015420009 CPT0015420009.WholeGenome.RP-1303.bam 59327386080 BAM submitted_aligned CPTAC3 536c12e1-44a2-4ed2-b81d-2a9fab6202d7 bd43c5c2ff4204da8315a9f6ce9324af {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.WGS.A.hg38 C3N-00572 LUAD WGS tissue_normal CPT0015420009 8b5f7f24-c316-4b44-a5c9-bd5c73c35489_wgs_gdc_realn.bam 88422268425 BAM harmonized CPTAC3 18b12454-d5fc-4292-aad0-39508e5a064a 0218598a7723f0f67739c0eec0679eb0 {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.WGS.N C3N-00572 LUAD WGS blood_normal CPT0015440002 CPT0015440002.WholeGenome.RP-1303.bam 60261192699 BAM submitted_aligned CPTAC3 7d182f8c-21fd-44a8-83b8-b9ea8f85fa1a 66983e4ca3f3efde74422d10d4f5c58f {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00572.WGS.N.hg38 C3N-00572 LUAD WGS blood_normal CPT0015440002 64935647-17f9-43a7-9874-6b6c3ea6e74f_gdc_realn.bam 89844867590 BAM harmonized CPTAC3 653c7eba-d11a-484c-a1be-165489cc1f0c 107b5b6fee9ea698b6fdb84d9a069f0f {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00572.WGS.T C3N-00572 LUAD WGS tumor CPT0015410009 CPT0015410009.WholeGenome.RP-1303.bam 69546385840 BAM submitted_aligned CPTAC3 637d9321-a062-4788-b2ba-c55e97c1d856 51ff906303b518f7d23892e353a77b9f {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.WGS.T.hg38 C3N-00572 LUAD WGS tumor CPT0015410009 16e085ef-aa13-4d9e-ad84-45d2fae7e8d6_gdc_realn.bam 101955360691 BAM harmonized CPTAC3 041b9b07-2687-46f8-9e97-f3eacaec0e3e 633a93c10bfa596251bd0c719f37fb4e {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.WXS.A C3N-00572 LUAD WXS tissue_normal CPT0015420009 CPT0015420009.WholeExome.RP-1303.bam 40148430253 BAM submitted_aligned CPTAC3 781993e5-2752-400b-8dd8-c0a53843ce25 4f05e47cadebb46ebcacb190458f533e {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.WXS.A.hg38 C3N-00572 LUAD WXS tissue_normal CPT0015420009 8b5f7f24-c316-4b44-a5c9-bd5c73c35489_wxs_gdc_realn.bam 54076734396 BAM harmonized CPTAC3 b62351ca-071f-4a62-90bb-761b2056e392 0ecc776aae585912213bf9426ef85c09 {"aliquot_tag": "ALQ_1ed8d926", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00572.WXS.N C3N-00572 LUAD WXS blood_normal CPT0015440002 CPT0015440002.WholeExome.RP-1303.bam 43747203387 BAM submitted_aligned CPTAC3 65294c36-1eff-4e4f-93bf-8660fac8b3b5 12e15ab44baf9a55485c7ade7561f7e2 {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00572.WXS.N.hg38 C3N-00572 LUAD WXS blood_normal CPT0015440002 64935647-17f9-43a7-9874-6b6c3ea6e74f_gdc_realn.bam 60474177791 BAM harmonized CPTAC3 c3f65c9a-98de-42e6-a84a-c14713f503a3 73c3299cf0124201d128ea51f31786b1 {"aliquot_tag": "ALQ_64af50e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00572.WXS.T C3N-00572 LUAD WXS tumor CPT0015410009 CPT0015410009.WholeExome.RP-1303.bam 32633195718 BAM submitted_aligned CPTAC3 da53b0e7-7f5e-465f-b503-beb7b140acbd 8992607861f55b26959dfd4cea193be6 {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00572.WXS.T.hg38 C3N-00572 LUAD WXS tumor CPT0015410009 16e085ef-aa13-4d9e-ad84-45d2fae7e8d6_gdc_realn.bam 45222865899 BAM harmonized CPTAC3 47edcd39-594b-4d96-b6c1-4e7332969669 efba569d4dd343116aa1d4e4eeaede38 {"aliquot_tag": "ALQ_5978a3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_135ba711.miRNA-Seq.S27_L002_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068980006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L002_R1_001.unaln.bam 206638144 BAM S27_L002_R1 submitted_unaligned CPTAC3 626dbb1b-5aaf-46c9-91c8-a87e4bf850f8 07a9e5a6b02d4f18a01170ceb7029fc0 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_135ba711.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068980006 873e34c6-3584-4258-9bc6-fbef1657324c_mirnaseq_gdc_realn.bam 231259961 BAM harmonized CPTAC3 270838b9-bdd5-4567-aa9b-3a0318ba1be6 0bd20ac87c91fff83f5cb132591433c0 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_135ba711.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.chimeric.gdc_realn.bam 41687723 BAM chimeric harmonized CPTAC3 dda74de3-85b5-4137-9744-d87531668b2a b9b3d7feec9767c7d2b41c5d09e2aff2 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_135ba711.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.genomic.gdc_realn.bam 9541701012 BAM genomic harmonized CPTAC3 f9451dcb-6572-4aef-8a0d-7dc6fd7628dc c6550108dd0697a36276bea82ab22b6d {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_135ba711.RNA-Seq.S27_L007_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R1_001.fastq.gz 4369383350 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 ae9995f9-517f-4e35-9d16-22e57745920e 8ce0dcd08275a0be7453e48a9d9a7e0b {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_135ba711.RNA-Seq.S27_L007_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R2_001.fastq.gz 5154277956 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 b5afe562-acc3-4969-938e-993a2c39e70f 75d81a130e01b2fdc145432669fa9572 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_135ba711.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.transcriptome.gdc_realn.bam 13241613661 BAM transcriptome harmonized CPTAC3 a9f13c80-3b8a-4c46-8cf7-516faac4e05c 889203a63ecc9f6c5ba4c2bafad9c5e5 {"aliquot_tag": "DUP_135ba711", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_1b42d51.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0068970009 204367490061_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 376be524-153c-4c0b-bdc3-a0acc33918b6 8702fc3e3a6b1b45757ccb9b2e6237a1 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_1b42d51.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0068970009 204367490061_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 d16988d3-1431-433e-bd93-b7119ed08b38 4185f2906b64405c8e93e8ad6903ae00 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_1b42d51.WGS.T C3N-00573 CCRCC WGS tumor CPT0068970009 CPT0068970009.WholeGenome.RP-2158.bam 20266913890 BAM submitted_aligned CPTAC3 e0309e08-5020-46ee-a3c2-7f3345b773c8 227df651839e09f614a30b0435787ce9 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_1b42d51.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0068970009 8b657200-b398-4044-a396-b99397ce5361_wgs_gdc_realn.bam 60665813092 BAM harmonized CPTAC3 882c7b7c-bf79-430f-9b8a-b9e7812183d2 27a7663f55ed193bdc1433d9cfa74828 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_1b42d51.WXS.T C3N-00573 CCRCC WXS tumor CPT0068970009 CPT0068970009.WholeExome.RP-1303.bam 21881307452 BAM submitted_aligned CPTAC3 8e6eed61-850f-4d6e-bc28-89f529d98821 6f3fac59c6f4c594ea941f751b24c47c {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_1b42d51.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0068970009 8b657200-b398-4044-a396-b99397ce5361_wxs_gdc_realn.bam 29602475691 BAM harmonized CPTAC3 de3939e0-f1ba-48c4-ab28-81640d36c4d9 fe3362e5608907cbf0a3c465036d9308 {"aliquot_tag": "DUP_1b42d51", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_2e3b8ea1.miRNA-Seq.S5_L001_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068990006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATTTT_S5_L001_R1_001.unaln.bam 378059132 BAM S5_L001_R1 submitted_unaligned CPTAC3 683e0931-e467-4337-8977-a6a3c335e1a1 027a43c361253c9f0ee8c651aaaabe68 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_2e3b8ea1.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068990006 d49dc8bd-4f80-4ee3-8a15-2cc89382a49b_mirnaseq_gdc_realn.bam 420463346 BAM harmonized CPTAC3 f2c052c2-dc36-4a34-8e3a-2ee01a7c8535 2d991d5a67bc49245dfae56370428962 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_2e3b8ea1.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.chimeric.gdc_realn.bam 44668126 BAM chimeric harmonized CPTAC3 cfaf5271-6d19-47ea-b51c-eff7d4c40cc9 dfa5b935473ae8cc2d25475eb4c8c1b7 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_2e3b8ea1.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.genomic.gdc_realn.bam 7807691168 BAM genomic harmonized CPTAC3 ad06f32a-af5c-4642-84f1-57594abbb5fa 65445ad0feeafda88e507d8b72cbbd2b {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_2e3b8ea1.RNA-Seq.S26_L007_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R1_001.fastq.gz 3516400254 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 f168df71-22e8-4e93-b119-db33288bca15 2ffe51167c21f3376fa1cdc9e50b4ea3 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_2e3b8ea1.RNA-Seq.S26_L007_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R2_001.fastq.gz 4046510456 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 acaeeb63-695e-4f7d-81a7-8bd834514232 b2dd6cc7e0a099d74a0e30174a28006e {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_2e3b8ea1.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.transcriptome.gdc_realn.bam 10144924619 BAM transcriptome harmonized CPTAC3 ff003744-94e3-4cf5-8e55-dc56cb2214d9 9281ba8d27aa1a55477a0878222e0391 {"aliquot_tag": "DUP_2e3b8ea1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_83e4ba80.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0068980009 204372030090_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 13009711-db7e-46d9-a510-41fdad6b335c 9a6bcc2f9c16a836b2d7134c7448b50a {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_83e4ba80.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0068980009 204372030090_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 c6009b48-a095-4bb9-a8eb-81611d337c48 e2eb21e72e1f6700beef26ece36f11fa {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_83e4ba80.WGS.T C3N-00573 CCRCC WGS tumor CPT0068980009 CPT0068980009.WholeGenome.RP-2158.bam 19753056180 BAM submitted_aligned CPTAC3 50e05b09-5405-4142-828d-af5b2ab4f1e0 33c0b981bfb44cf7058897d03cf594bf {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_83e4ba80.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0068980009 be7791a7-d4c9-48fa-abbf-a89f72120080_wgs_gdc_realn.bam 59292343946 BAM harmonized CPTAC3 b0a94a4d-443d-44bb-a3b9-ffb660f398fb 4960ef325fc4d5d0e84509fda71588e7 {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_83e4ba80.WXS.T C3N-00573 CCRCC WXS tumor CPT0068980009 CPT0068980009.WholeExome.RP-1303.bam 24805270574 BAM submitted_aligned CPTAC3 f32bf482-1f8c-4045-82f0-5d8578ed7738 636d8a4eea10fe61341f92506bdd0bbb {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_83e4ba80.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0068980009 be7791a7-d4c9-48fa-abbf-a89f72120080_wxs_gdc_realn.bam 33709116103 BAM harmonized CPTAC3 5912c53d-4698-4252-a96b-a60b38e3840a 83bfcf6ef859fd76ff59d39445ba5588 {"aliquot_tag": "DUP_83e4ba80", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_910b30c0.miRNA-Seq.S40_L005_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068970006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGATC_S40_L005_R1_001.unaln.bam 218993804 BAM S40_L005_R1 submitted_unaligned CPTAC3 ba781018-ba9c-4c64-85fa-a8ef4dba9200 591872519abc27e64d9df227d7dbbae1 {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_910b30c0.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068970006 fb1eab31-0fb2-4b7c-8cb1-adc25e1f9a5a_mirnaseq_gdc_realn.bam 243959981 BAM harmonized CPTAC3 a20a845d-e264-4de7-963b-75c1dd397bf6 4367511abc4794cfc87b8e8b1f22e73f {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_910b30c0.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.chimeric.gdc_realn.bam 238298314 BAM chimeric harmonized CPTAC3 eeb7d8cf-caed-44a4-b545-e4c23be8b2aa dfaeaa7fe048a1d5ef7debc5c13bc968 {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_910b30c0.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.genomic.gdc_realn.bam 8002486750 BAM genomic harmonized CPTAC3 54cb83c4-9788-470a-9c1e-b47f068ac22c 3e56ff811321c856a7a48a6cf4f9c34f {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_910b30c0.RNA-Seq.S33_L005_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R1_001.fastq.gz 3596352020 FASTQ S33_L005_R1 submitted_unaligned CPTAC3 b956ad15-1015-4bcb-8826-06e134175ba8 d64435c8dc4c8358b458b2296fa09c9d {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_910b30c0.RNA-Seq.S33_L005_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R2_001.fastq.gz 4295270762 FASTQ S33_L005_R2 submitted_unaligned CPTAC3 44682b18-e494-476f-b1fa-4e047c4abb0a b2c512114bf73f264707288e38e101c4 {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_910b30c0.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.transcriptome.gdc_realn.bam 10612314019 BAM transcriptome harmonized CPTAC3 d8b4ac5b-0060-4bb0-a7e6-8c5bce0eb8c0 25ce7d89fcf9cd63caeae6ec096e956c {"aliquot_tag": "DUP_910b30c0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_be849330.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0068990009 204372030106_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7afc4f3b-2f09-427b-808c-66d179518130 7a9d2a7ea48cc89653a32384bb4cbf93 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_be849330.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0068990009 204372030106_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 2d65e679-49f8-4a55-97ac-338a4b1a0abd 64ec3c22670c15c2c7cc4f6d7086ca04 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_be849330.WGS.T C3N-00573 CCRCC WGS tumor CPT0068990009 CPT0068990009.WholeGenome.RP-2158.bam 24006869196 BAM submitted_aligned CPTAC3 8a4cf43a-f13e-47d7-aabf-b967d32efa25 e76fa18a1fb5d2f248d1a234e9c679a0 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_be849330.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0068990009 97244938-2af2-44f7-99b1-b7ca4c776293_wgs_gdc_realn.bam 70411947009 BAM harmonized CPTAC3 32d40ab3-f969-4486-b486-376d71c729d3 efc42af958369bdff60bd855d5b95c44 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_be849330.WXS.T C3N-00573 CCRCC WXS tumor CPT0068990009 CPT0068990009.WholeExome.RP-1303.bam 20319562957 BAM submitted_aligned CPTAC3 dc98df8e-b119-4588-85f6-c5e77cfb412e ee393af6d1da56e8a83726e120e129d1 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.DUP_be849330.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0068990009 97244938-2af2-44f7-99b1-b7ca4c776293_wxs_gdc_realn.bam 27445546159 BAM harmonized CPTAC3 b5cdbe53-9ebe-471d-b484-dfcd85091b0f d488f08b4e0344c9ef02483e1b90e3c6 {"aliquot_tag": "DUP_be849330", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.MethArray.Green.A C3N-00573 CCRCC Methylation_Array tissue_normal CPT0069010009 204930640065_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 25623139-0dc3-44c5-bc87-d80d384ca5ca 97ce74baa261133e37723fd0303be7d6 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.MethArray.Green.T C3N-00573 CCRCC Methylation_Array tumor CPT0069000006 202184990059_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 12d3422a-d8c6-43f2-a85f-01114b6d2f07 a58690a199f4cfc355e2fba7bd3f8ad2 {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.MethArray.Red.A C3N-00573 CCRCC Methylation_Array tissue_normal CPT0069010009 204930640065_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 61792453-d6a3-42d3-bd89-838516602104 e5180820dfc99b2f853aec90dbc09f35 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.MethArray.Red.T C3N-00573 CCRCC Methylation_Array tumor CPT0069000006 202184990059_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 c20402c5-34ec-4590-8ac6-48d0b8aab23a 139f7403804059ffe7e0acf659656cd4 {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.miRNA-Seq.A.hg38 C3N-00573 CCRCC miRNA-Seq tissue_normal CPT0069010006 451fbc46-8b0e-48a0-9670-8013bbe5d7c9_mirnaseq_gdc_realn.bam 242738070 BAM harmonized CPTAC3 75a76769-6aa2-4fc3-b456-941f1ce102cf 01bc4d1f81807c2c13997d3a811e5e40 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.miRNA-Seq.S13_L003_R1.A C3N-00573 CCRCC miRNA-Seq tissue_normal CPT0069010006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L003_R1_001.unaln.bam 219449464 BAM S13_L003_R1 submitted_unaligned CPTAC3 7072c7c4-a59c-40b9-9d36-ca974db4a6ef 162399ff30f7a581bdb10a9dd19d5fb3 {"aliquot_tag": "ALQ_9f339f1c", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.miRNA-Seq.S22_L001_R1.T C3N-00573 CCRCC miRNA-Seq tumor CPT0069000009 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L001_R1_001.unaln.bam 222929934 BAM S22_L001_R1 submitted_unaligned CPTAC3 22f2b8bf-1dac-467c-93f0-58539d6e0401 2a6b9c5e48abd784ca2c7a086dfa4638 {"aliquot_tag": "ALQ_32ecab3d", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0069000009 a9123e41-4f53-4407-8322-d4b30c66f144_mirnaseq_gdc_realn.bam 249247311 BAM harmonized CPTAC3 0e881d6c-4a59-4ad8-a17d-ce393bfddcce 0a4d07a6f6246fd15742b951dbcba123 {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.RNA-Seq.chimeric.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.chimeric.gdc_realn.bam 43942371 BAM chimeric harmonized CPTAC3 8e189728-6166-4584-bb07-fd9161b99405 dd132ad91bf784311cec57ac71a16168 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.chimeric.gdc_realn.bam 33164121 BAM chimeric harmonized CPTAC3 349d4e5d-996e-4655-beef-dddb8c61699a efe23bf0a100b6d7f14f863a4b8a208d {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.RNA-Seq.genomic.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.genomic.gdc_realn.bam 7465468761 BAM genomic harmonized CPTAC3 4e104baa-f4a3-4f9a-b8b5-1f86e19f8bf9 0138b474b740e3bc606faea34cf2b619 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.genomic.gdc_realn.bam 7926788094 BAM genomic harmonized CPTAC3 2a452ecd-f0f5-4f14-8e98-481535b87a02 e4da0b716de71b24b0dd886d106862a9 {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.RNA-Seq.S13_L004_R1.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R1_001.fastq.gz 3774504274 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 2e2880df-0c02-43ff-a8fc-7f8ca3b8cfa1 f173b3f364ca65d1f7367641a5e9f9b5 {"aliquot_tag": "ALQ_9f339f1c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.RNA-Seq.S13_L004_R2.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R2_001.fastq.gz 4013776353 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 17350738-3fbb-4894-bed3-5fe7a8d0d6ae ed7061257ddb5e25e8f2f3d541047c2f {"aliquot_tag": "ALQ_9f339f1c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.RNA-Seq.S9_L003_R1.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3753340556 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 e63a8f80-3340-4961-8b91-7d6567b3d9ba 48541fdc28c754e4add81d09b3320f64 {"aliquot_tag": "ALQ_32ecab3d", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.RNA-Seq.S9_L003_R2.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R2_001.fastq.gz 4057789628 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 6da0f2bc-0521-42e0-8b7c-364457d2288b d92b6f105372b6547ea823c42e4225dc {"aliquot_tag": "ALQ_32ecab3d", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.RNA-Seq.transcriptome.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.transcriptome.gdc_realn.bam 8964737827 BAM transcriptome harmonized CPTAC3 c8926631-fa8b-4dcb-9ea6-da70055978e7 46d57fe3bc4662b4fd6027075f9ac1f8 {"aliquot_tag": "ALQ_9f339f1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.transcriptome.gdc_realn.bam 10041898571 BAM transcriptome harmonized CPTAC3 bd90c489-6a45-4da2-93ad-7f01ecd89f07 f40b0fd3c9c88cf0c527059579515fd7 {"aliquot_tag": "ALQ_32ecab3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.WGS.A C3N-00573 CCRCC WGS tissue_normal CPT0069010009 CPT0069010009.WholeGenome.RP-1303.bam 69090535173 BAM submitted_aligned CPTAC3 6d270594-bf4c-4a21-967e-3938ed49b9f5 b8e72e3a1ab1d0934be923387943fbe0 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.WGS.A.hg38 C3N-00573 CCRCC WGS tissue_normal CPT0069010009 b641e57a-2b34-4d36-bd2e-8a3a54b988b8_wgs_gdc_realn.bam 100417816170 BAM harmonized CPTAC3 088e7d09-5a00-4f02-8cac-6ac64c751099 1f7d79b06a6be454dac825f374d53b77 {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.WGS.N C3N-00573 CCRCC WGS blood_normal CPT0069090002 CPT0069090002.WholeGenome.RP-1303.bam 89666535823 BAM submitted_aligned CPTAC3 23c6345e-53e3-4075-ad51-acd5e6e7978c 2aa85dad5394be202129d314ac364147 {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00573.WGS.N.hg38 C3N-00573 CCRCC WGS blood_normal CPT0069090002 366e021b-ebe0-4ef7-8a77-80f237dc316d_gdc_realn.bam 134721972304 BAM harmonized CPTAC3 e4804cef-cd20-4833-b207-0fe080592c93 975b256c2e110117cbc41cbcd62e5efe {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00573.WGS.T C3N-00573 CCRCC WGS tumor CPT0069000006 CPT0069000006.WholeGenome.RP-1303.bam 62976440347 BAM submitted_aligned CPTAC3 5009a6e3-6fb3-46a1-a020-ea967536ab63 4e64e91cd3a95d56ad1920bf1f299f1b {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.WGS.T.hg38 C3N-00573 CCRCC WGS tumor CPT0069000006 631f5939-bd6d-4a1e-8476-e2fee9ebe6c4_gdc_realn.bam 93381403741 BAM harmonized CPTAC3 cf6a14f4-1b5d-4c7f-bc95-dd59a30a2aad 738b49541d52614368856be851b0b8b4 {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.WXS.A C3N-00573 CCRCC WXS tissue_normal CPT0069010009 CPT0069010009.WholeExome.RP-1303.bam 35811509637 BAM submitted_aligned CPTAC3 6ebb8e44-9ecd-41ab-9454-f2d85e017c3d 9797f8a4337b4f128a7904dec7409e3b {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.WXS.A.hg38 C3N-00573 CCRCC WXS tissue_normal CPT0069010009 b641e57a-2b34-4d36-bd2e-8a3a54b988b8_wxs_gdc_realn.bam 48348802385 BAM harmonized CPTAC3 5783af03-1720-410e-af8b-c90c4df4069e b0797853390ea4ba96827cada96c0d4d {"aliquot_tag": "ALQ_f8c828d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00573.WXS.N C3N-00573 CCRCC WXS blood_normal CPT0069090002 CPT0069090002.WholeExome.RP-1303.bam 29689663218 BAM submitted_aligned CPTAC3 31b882bd-d0b5-4da6-8bf2-ee747facdecf fd20c25f00c19df6a7625046dbe600ad {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00573.WXS.N.hg38 C3N-00573 CCRCC WXS blood_normal CPT0069090002 366e021b-ebe0-4ef7-8a77-80f237dc316d_gdc_realn.bam 39789493860 BAM harmonized CPTAC3 61d8df3e-f0bc-4831-aada-a79f9afb58f3 5ffe7d1ecef3b1542e26bcf206c5e1f4 {"aliquot_tag": "ALQ_a82e10c4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00573.WXS.T C3N-00573 CCRCC WXS tumor CPT0069000006 CPT0069000006.WholeExome.RP-1303.bam 25210466686 BAM submitted_aligned CPTAC3 cfef351c-5632-4fb9-bc3d-d9bac78493d1 31b202d622aa79be67276fc7432082da {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00573.WXS.T.hg38 C3N-00573 CCRCC WXS tumor CPT0069000006 631f5939-bd6d-4a1e-8476-e2fee9ebe6c4_gdc_realn.bam 34690882500 BAM harmonized CPTAC3 fa3d2f42-f366-4dc6-a4a0-e49cddfc61dc d57ce7d11c3b97fabcc18ca0e365bc2e {"aliquot_tag": "ALQ_a253b6ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.MethArray.Green.A C3N-00574 LUAD Methylation_Array tissue_normal CPT0090900010 203028200023_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5f8770ac-d592-47e8-976b-b5da2d00384e e567e3b70ec79f440eb82a8be4104fd8 {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.MethArray.Green.T C3N-00574 LUAD Methylation_Array tumor CPT0090860013 202234380017_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1a0a9ac1-1b21-415a-8c67-40e335aeec09 dc1d20acddb12b199a40cecaf72a7665 {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.MethArray.Red.A C3N-00574 LUAD Methylation_Array tissue_normal CPT0090900010 203028200023_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 ffbdf9dd-a140-4f36-b53c-8594e1dc0e44 2dc68061deae0843c6646dec8ee0144a {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.MethArray.Red.T C3N-00574 LUAD Methylation_Array tumor CPT0090860013 202234380017_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 77aa5c81-50a3-479d-8dd5-2b1ef6baf5bb a18d15872e1ae994f169591e407153ea {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.miRNA-Seq.A.hg38 C3N-00574 LUAD miRNA-Seq tissue_normal CPT0090900007 1fb36a49-5f7a-47f5-9210-3ab931f6e122_mirnaseq_gdc_realn.bam 192899428 BAM harmonized CPTAC3 8a4275c3-cbb1-4b1b-81f3-f16ea2088019 4eee016717622a41095729d096697de5 {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.miRNA-Seq.S2_L007_R1.T C3N-00574 LUAD miRNA-Seq tumor CPT0090860006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATGAGC_S2_L007_R1_001.unaln.bam 262798739 BAM S2_L007_R1 submitted_unaligned CPTAC3 03041c07-a77e-4c6f-a7fc-2890cd15701d 77a248975538decf1402ec22bf0f882a {"aliquot_tag": "ALQ_8df8961e", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.miRNA-Seq.S9_L005_R1.A C3N-00574 LUAD miRNA-Seq tissue_normal CPT0090900007 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L005_R1_001.unaln.bam 173567554 BAM S9_L005_R1 submitted_unaligned CPTAC3 81b57eab-3e68-43ac-8f67-aacab26155f1 d61aef79a1c370351a7f38ae1938ccb6 {"aliquot_tag": "ALQ_bee3808d", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.miRNA-Seq.T.hg38 C3N-00574 LUAD miRNA-Seq tumor CPT0090860006 260017b1-18d9-4d3f-bcf9-285017d013d1_mirnaseq_gdc_realn.bam 291553624 BAM harmonized CPTAC3 e3776c3f-8887-4e4e-9ff6-e67349f0405c 0d9f5be9ac2885495bf6dbc1188e4021 {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.RNA-Seq.chimeric.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.chimeric.gdc_realn.bam 142911348 BAM chimeric harmonized CPTAC3 bfd206aa-bd5b-43cd-beea-00dea0b5fe9d 2858b7ad3a65a72e4f145d3ab4deaece {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.RNA-Seq.chimeric.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.chimeric.gdc_realn.bam 44075065 BAM chimeric harmonized CPTAC3 5aecfec6-e2c6-4067-a028-98a188dd5297 cb53cf617d78356ef132eb605f188893 {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.RNA-Seq.genomic.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.genomic.gdc_realn.bam 9424689591 BAM genomic harmonized CPTAC3 deabed94-79ee-4065-b9d8-06d8024f1ba8 fd39b510a9c3dd34bd7d7b302308044d {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.RNA-Seq.genomic.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.genomic.gdc_realn.bam 10404263676 BAM genomic harmonized CPTAC3 6e74cc9e-83fc-4112-8174-18e422459927 6018f45537fe9ed4fd32e31b7fa5e8bc {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.RNA-Seq.S16_L004_R1.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 4416156401 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 e58e5af1-32fc-41b7-8957-9b7cecd576a9 25b1f3c948c3008b904d4100e6958734 {"aliquot_tag": "ALQ_bee3808d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.RNA-Seq.S16_L004_R2.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 4682498670 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 af414703-79f3-4d68-be79-9e0f77d0baee 25fd90f707a93241df00296d41ea16a5 {"aliquot_tag": "ALQ_bee3808d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.RNA-Seq.S6_L007_R1.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R1_001.fastq.gz 4676322581 FASTQ S6_L007_R1 submitted_unaligned CPTAC3 015afacd-88f7-4ba6-816e-6a052ce93628 a1bbabfd9da0f981a6249bef59ba5783 {"aliquot_tag": "ALQ_8df8961e", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.RNA-Seq.S6_L007_R2.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R2_001.fastq.gz 5050755625 FASTQ S6_L007_R2 submitted_unaligned CPTAC3 1f745827-9869-45f6-a84f-6f160ecef687 62a11b78343c4a621a67638c63d80e20 {"aliquot_tag": "ALQ_8df8961e", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.RNA-Seq.transcriptome.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.transcriptome.gdc_realn.bam 10718727566 BAM transcriptome harmonized CPTAC3 e1a9345a-bdc3-44a6-9ec3-885dec9d3071 d6d03e7bec69883eee5c95f649637070 {"aliquot_tag": "ALQ_bee3808d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.RNA-Seq.transcriptome.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.transcriptome.gdc_realn.bam 12548124190 BAM transcriptome harmonized CPTAC3 e0962696-b058-4d66-80b3-b71025688850 88a37a01a70e45dc265639e8cdae54a7 {"aliquot_tag": "ALQ_8df8961e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.WGS.A C3N-00574 LUAD WGS tissue_normal CPT0090900010 CPT0090900010.WholeGenome.RP-1303.bam 56152430483 BAM submitted_aligned CPTAC3 2bc03203-26ad-493d-8498-89c15197d3ec 4b44b560e88fd3a3dc9599817aace10c {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.WGS.A.hg38 C3N-00574 LUAD WGS tissue_normal CPT0090900010 6d88bc3f-a88e-41e9-ad9f-e8bec0970b8f_wgs_gdc_realn.bam 82600043908 BAM harmonized CPTAC3 b4050317-1f02-4ee2-a881-652f46279205 85fb625b8cdcbd0d64653af47d5e150a {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.WGS.N C3N-00574 LUAD WGS blood_normal CPT0090980002 CPT0090980002.WholeGenome.RP-1303.bam 70048874040 BAM submitted_aligned CPTAC3 94e99d79-e387-4c1b-9a27-01eeca00f7f6 e41c509eca6b87609d2fb93a36fab464 {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00574.WGS.N.hg38 C3N-00574 LUAD WGS blood_normal CPT0090980002 dcda1140-7219-4b8b-a196-5400ac5946dc_wgs_gdc_realn.bam 103567306792 BAM harmonized CPTAC3 67547610-0b58-434f-9614-ea76869e12ea f0aa1797b928d2575eea6541518fac6e {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00574.WGS.T C3N-00574 LUAD WGS tumor CPT0090860013 CPT0090860013.WholeGenome.RP-1303.bam 59492523920 BAM submitted_aligned CPTAC3 91b099ec-e48f-43fa-bddd-71abd4d05cbb 5903da279fff0f55c44ac91b1ff7a69f {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.WGS.T.hg38 C3N-00574 LUAD WGS tumor CPT0090860013 98d420ef-b893-47dd-afe4-076b40ce8706_wgs_gdc_realn.bam 87203417572 BAM harmonized CPTAC3 77c2d351-744d-46a3-97a1-71c545e67517 e016fae434d41b2fb64a11791bf3e724 {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.WXS.A C3N-00574 LUAD WXS tissue_normal CPT0090900010 CPT0090900010.WholeExome.RP-1303.bam 27361471938 BAM submitted_aligned CPTAC3 63ce7a2c-5bea-4a1b-8134-a3a7defa6dc3 aa8b0530aed87c398886508d4702af82 {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.WXS.A.hg38 C3N-00574 LUAD WXS tissue_normal CPT0090900010 6d88bc3f-a88e-41e9-ad9f-e8bec0970b8f_wxs_gdc_realn.bam 36740255073 BAM harmonized CPTAC3 35177e04-9c3a-4416-b53a-64e3f1029268 14d3ac00dc19badcf756a89c084dfbf0 {"aliquot_tag": "ALQ_399c246f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00574.WXS.N C3N-00574 LUAD WXS blood_normal CPT0090980002 CPT0090980002.WholeExome.RP-1303.bam 27636177579 BAM submitted_aligned CPTAC3 b7f12dba-05c7-43d8-a4ad-58d9821040a9 dc3a75b6666be70a3a3c6a4127a9765e {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00574.WXS.N.hg38 C3N-00574 LUAD WXS blood_normal CPT0090980002 dcda1140-7219-4b8b-a196-5400ac5946dc_wxs_gdc_realn.bam 36298025651 BAM harmonized CPTAC3 06f8e00c-d7a7-4f5a-8c46-cccac73b944e ce39b8fe658435839095a2bb2f4361d1 {"aliquot_tag": "ALQ_fef93fc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00574.WXS.T C3N-00574 LUAD WXS tumor CPT0090860013 CPT0090860013.WholeExome.RP-1303.bam 39695126985 BAM submitted_aligned CPTAC3 9ba4d6d9-d2c8-4b78-8d80-583257a515f8 70c4da62d3409ebf2b2bbe0edf62c7da {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00574.WXS.T.hg38 C3N-00574 LUAD WXS tumor CPT0090860013 98d420ef-b893-47dd-afe4-076b40ce8706_wxs_gdc_realn.bam 53794823717 BAM harmonized CPTAC3 e4f316ae-a7b3-4d9c-8726-723f16c008fc 771ab02e920f6ce463babc5210f0fd04 {"aliquot_tag": "ALQ_e48953d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_3150f7e8.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069150009 204372030023_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 bc2523fd-a0c7-46f3-b131-a3df00ab7d51 c31cfdb0e2e7e7020c2e8f68e7468dc1 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_3150f7e8.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069150009 204372030023_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 4f678198-3268-4a6d-9d02-7b19150e9add c96d0ec8585ce4d19cad0dcfadb93ec6 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_3150f7e8.WGS.T C3N-00577 CCRCC WGS tumor CPT0069150009 CPT0069150009.WholeGenome.RP-2158.bam 24649047463 BAM submitted_aligned CPTAC3 0f0ba1a9-c91f-4344-91c9-0f864a4cd1f4 4362015b70e24f01d8c0736050903475 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_3150f7e8.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069150009 8c9608a3-d2b8-429c-8201-d3ab5fd3a496_wgs_gdc_realn.bam 72858954482 BAM harmonized CPTAC3 69f53591-14d1-47f3-884a-e84b2b8478be cfdcf37c020b6d634f0db0eeec9dcb10 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_3150f7e8.WXS.T C3N-00577 CCRCC WXS tumor CPT0069150009 CPT0069150009.WholeExome.RP-1303.bam 27577116032 BAM submitted_aligned CPTAC3 46f78b1a-c9f1-4b03-9949-ef253f3c862e 7fd2e2c5562d4ae81ce5367466993bde {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_3150f7e8.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069150009 8c9608a3-d2b8-429c-8201-d3ab5fd3a496_wxs_gdc_realn.bam 39090472095 BAM harmonized CPTAC3 3fd2a0fa-7e31-4b7b-a619-2349f3a264b2 bf8c3c1eca973ba3b73de036c42e1a43 {"aliquot_tag": "DUP_3150f7e8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_4b90a488.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069170009 204367490151_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d96c3105-11d6-472d-8187-a9e1417094fa a7ce3967727edb56e8fff1b319b54931 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_4b90a488.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069170009 204367490151_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 eab6b3ad-de2e-44b3-baae-db2b0a14731a ad33d01ff7ef5129c054aa123c1eb6a4 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_4b90a488.WGS.T C3N-00577 CCRCC WGS tumor CPT0069170009 CPT0069170009.WholeGenome.RP-2158.bam 20583029522 BAM submitted_aligned CPTAC3 60562170-0ff0-4681-9b73-b1e1051a12c8 8f1d45959325d63aa64b3685ea17697a {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_4b90a488.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069170009 49b836e4-e6ee-4a46-b4d9-d5a95d3bd2ec_wgs_gdc_realn.bam 59416823850 BAM harmonized CPTAC3 ef491060-c2fc-412d-a896-7abbba604bcc 38c5680b0197addad0b018d477986f16 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_4b90a488.WXS.T C3N-00577 CCRCC WXS tumor CPT0069170009 CPT0069170009.WholeExome.RP-1303.bam 19787142671 BAM submitted_aligned CPTAC3 dc931ec0-196f-45c7-8341-64676a20cad9 30b268ae4a6e0004f632ed13cc098d72 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_4b90a488.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069170009 49b836e4-e6ee-4a46-b4d9-d5a95d3bd2ec_wxs_gdc_realn.bam 27339869848 BAM harmonized CPTAC3 09371cda-a798-43c1-946b-b816603cee27 aaefa4e26929b8232182dea143c80f89 {"aliquot_tag": "DUP_4b90a488", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_597f2ec8.miRNA-Seq.S8_L001_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069180006 200526_UNC32-K00270_0248_BHH7WFBBXY_CGGAAT_S8_L001_R1_001.unaln.bam 463156172 BAM S8_L001_R1 submitted_unaligned CPTAC3 c2192a85-cc2e-4789-8db7-f2094812973d bfbeb34f0d865d54f681ddedc8fda781 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_597f2ec8.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069180006 2d23b851-203c-4a9b-b946-5b91ff2f08c1_mirnaseq_gdc_realn.bam 507716346 BAM harmonized CPTAC3 8e8f9982-4ec0-4bce-b97b-d06dcdd02225 ccacb530c1d8d13387eb56f3859b7075 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_597f2ec8.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.chimeric.gdc_realn.bam 61931323 BAM chimeric harmonized CPTAC3 e213b21e-3a99-46ee-9ed1-cf77ca3e1241 678334d6be0acecd006d6488a87b85c8 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_597f2ec8.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.genomic.gdc_realn.bam 9399824558 BAM genomic harmonized CPTAC3 5756adc0-42cb-483b-af69-024de3e5d993 a75387e64e6638ad0543b9bfa70f58d5 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_597f2ec8.RNA-Seq.S29_L008_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R1_001.fastq.gz 4434135807 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 60437aba-8115-44b3-84df-8849e86a5a1a eb36a7eed0a343b7030f3fa725343e5b {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_597f2ec8.RNA-Seq.S29_L008_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R2_001.fastq.gz 4984857975 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 91d20682-7bde-4749-bac3-4f27f96f885a 40bd78763828a6f7c3ea70cc11b6886e {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_597f2ec8.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.transcriptome.gdc_realn.bam 12381574272 BAM transcriptome harmonized CPTAC3 a29c34e3-9f88-45d6-a2fd-6c550da84910 dd6b177c4e6e86cf610fad683e01d358 {"aliquot_tag": "DUP_597f2ec8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_a1efea79.miRNA-Seq.S36_L005_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069150006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L005_R1_001.unaln.bam 184070990 BAM S36_L005_R1 submitted_unaligned CPTAC3 53edc5cd-f442-40d0-8dc2-86caa01f9d74 6f4f5213fa88873ad505857f5753e716 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_a1efea79.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069150006 2d267255-15d9-4c81-9aaa-e9e247d8f685_mirnaseq_gdc_realn.bam 203497337 BAM harmonized CPTAC3 b2a6ff8c-d0ca-43c1-8ecf-f30bce63bbf2 b9efb580e1b35a247c29776c23267287 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_a1efea79.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.chimeric.gdc_realn.bam 115088007 BAM chimeric harmonized CPTAC3 a469ef69-0ad4-4100-8f26-00a8c194eba6 84fa5aa5954ffcff409c5f5fddbe98c7 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_a1efea79.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.genomic.gdc_realn.bam 11292644587 BAM genomic harmonized CPTAC3 7831b501-4c9e-4282-894a-9180bb347d4e 5f4d6574d44526e0c3921667c2ee8ca1 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_a1efea79.RNA-Seq.S35_L005_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R1_001.fastq.gz 5367247074 FASTQ S35_L005_R1 submitted_unaligned CPTAC3 597afa5b-9346-4018-9b9e-72dd9003259f 9f1d57ee81b69f757f06a31d2c4f7160 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_a1efea79.RNA-Seq.S35_L005_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R2_001.fastq.gz 6345599528 FASTQ S35_L005_R2 submitted_unaligned CPTAC3 16cac540-faae-4c30-9a93-0401752d030b a0691d5eac059bdfde5ed9f13d4eaeaa {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_a1efea79.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.transcriptome.gdc_realn.bam 16544698267 BAM transcriptome harmonized CPTAC3 987e0d16-d94d-4c04-9836-586a36bc98fd 0ce2af44556b7c98a54f4a6815c5b369 {"aliquot_tag": "DUP_a1efea79", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_c9c03359.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069180009 204367490082_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35449faa-21ec-4fc9-8f4b-d8f305d0968f ddd9af4e5b05245af8da27e4737b3d60 {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_c9c03359.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069180009 204367490082_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 8f7e3ae4-401f-4a2f-934a-f6baa6e749e3 f1b7d1347603b5036676721901d6c32b {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_c9c03359.WGS.T C3N-00577 CCRCC WGS tumor CPT0069180009 CPT0069180009.WholeGenome.RP-2158.bam 32708183632 BAM submitted_aligned CPTAC3 b8b5af56-1574-4c19-8092-d6dca22ee4d0 8e890927bd3d5640c24580b5168a98ab {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_c9c03359.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069180009 b55b7dd3-d87e-4112-a433-cdfe50201ed6_wgs_gdc_realn.bam 98755805687 BAM harmonized CPTAC3 7e247e61-f612-446f-a69e-3fa9fa2f7c79 65fbcceedc5528ff12c9ed6930cfe982 {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_c9c03359.WXS.T C3N-00577 CCRCC WXS tumor CPT0069180009 CPT0069180009.WholeExome.RP-1303.bam 20072747318 BAM submitted_aligned CPTAC3 0801c498-0478-45de-9416-9da8c155862e 8556b313142eceba6136582b83bb0773 {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_c9c03359.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069180009 b55b7dd3-d87e-4112-a433-cdfe50201ed6_wxs_gdc_realn.bam 27557276894 BAM harmonized CPTAC3 b187211c-591b-455e-af60-0e1f1952cc35 ebd8f22a6b978134d8975c6d5860970b {"aliquot_tag": "DUP_c9c03359", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_db2fb919.miRNA-Seq.S6_L001_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069170006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCAACA_S6_L001_R1_001.unaln.bam 181702767 BAM S6_L001_R1 submitted_unaligned CPTAC3 be26a65b-799d-43a6-8a1c-fae252ce3d58 516fe673b5f1dee5b6c479810ec5eaf6 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_db2fb919.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069170006 814fa060-8ef4-404b-8059-dc7524965419_mirnaseq_gdc_realn.bam 207350277 BAM harmonized CPTAC3 30c56365-ade7-47d2-8e38-6a10d905beaf 153c91cde5b56ab870db2f2deac82a27 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_db2fb919.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.chimeric.gdc_realn.bam 50965546 BAM chimeric harmonized CPTAC3 78797883-f740-4f25-adf9-28a43a005d40 266c0f97a68c4893d4c8985f7ae1119c {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_db2fb919.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.genomic.gdc_realn.bam 7998487918 BAM genomic harmonized CPTAC3 d9de84f9-f69f-470e-aa9a-530a82eaa7a9 463655237a4393825250172b5a1cb0cc {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_db2fb919.RNA-Seq.S28_L007_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R1_001.fastq.gz 3840518948 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 646f78df-cd18-4ce3-a1f6-9da37aef3308 2926811c7a5ba4859d8b7a84fda6c878 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_db2fb919.RNA-Seq.S28_L007_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R2_001.fastq.gz 4290629334 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 d0440171-58ed-4780-807e-8cc091ca601a a3214d2f3948188b8290ab52f1952438 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.DUP_db2fb919.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.transcriptome.gdc_realn.bam 12141553956 BAM transcriptome harmonized CPTAC3 725cb00b-b4eb-439c-8e4c-fd879d1df3aa 475c7117df2f18691ac7fcecb18125a1 {"aliquot_tag": "DUP_db2fb919", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.MethArray.Green.A C3N-00577 CCRCC Methylation_Array tissue_normal CPT0069190009 204930640065_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 904bd903-7d50-4618-ab6f-197e3f881b3e ff41041e10af386a5225ebbebe87545a {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.MethArray.Green.T C3N-00577 CCRCC Methylation_Array tumor CPT0069160006 202178770079_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 b71c6660-9862-442d-986d-c925a53b9d4c 078072395dfe304b4ba188a9feb7ee23 {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.MethArray.Red.A C3N-00577 CCRCC Methylation_Array tissue_normal CPT0069190009 204930640065_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 1ea981bc-d4f2-48f8-95ba-163e61e6291e 1d1ff8f3a4bda93efe8bf38bb6908238 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.MethArray.Red.T C3N-00577 CCRCC Methylation_Array tumor CPT0069160006 202178770079_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 fbd88f51-a5c4-499b-96be-fa6483856319 717c7f48b41fcbc3710a53b0b1dc9bfc {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.miRNA-Seq.A.hg38 C3N-00577 CCRCC miRNA-Seq tissue_normal CPT0069190006 ca2ba3b2-2502-405a-bfbf-5e6ebe950099_mirnaseq_gdc_realn.bam 229901010 BAM harmonized CPTAC3 353df41b-f6bb-4d10-9251-9b84bcbf4c24 aae93e3d4cf9918b0778f64eac3e6c3d {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.miRNA-Seq.S14_L003_R1.A C3N-00577 CCRCC miRNA-Seq tissue_normal CPT0069190006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L003_R1_001.unaln.bam 207695420 BAM S14_L003_R1 submitted_unaligned CPTAC3 b74697f3-a0cf-4bf1-9b54-7578b7da7f3c ed0cc8f0f798b480bdfb61a4476def65 {"aliquot_tag": "ALQ_641f0778", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.miRNA-Seq.S23_L001_R1.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069160009 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L001_R1_001.unaln.bam 200713625 BAM S23_L001_R1 submitted_unaligned CPTAC3 ce2a5270-a547-4294-9425-dc4a270209b5 d42ab7a723898afa66499594cba97577 {"aliquot_tag": "ALQ_76f08d38", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069160009 f4773953-3ff7-4de1-98c6-6eb77cd37e42_mirnaseq_gdc_realn.bam 218733046 BAM harmonized CPTAC3 4edb19e2-745c-485d-b705-7a85ef740b01 88bc3a35ed6cefa532ae8b078cef2be3 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.RNA-Seq.chimeric.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.chimeric.gdc_realn.bam 65770599 BAM chimeric harmonized CPTAC3 d1796a74-e014-4cf9-8e51-a4cbcabc6769 9c5c75f189977a652ff0703bf94bc021 {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.chimeric.gdc_realn.bam 37673311 BAM chimeric harmonized CPTAC3 c66cc7c9-ae7f-4cc9-b3f0-794d652bd346 3fe87f47abc399ad36db7c6359531d07 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.RNA-Seq.genomic.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.genomic.gdc_realn.bam 8683774616 BAM genomic harmonized CPTAC3 cc4c1875-0a47-4207-b3e9-e3067847eba3 9e62124d1a51a65090054f49770b3a08 {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.genomic.gdc_realn.bam 9324648846 BAM genomic harmonized CPTAC3 b7a6709c-175a-4815-8001-675a977a0434 5ecf3248800e27214508e45d77596ac7 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.RNA-Seq.S11_L003_R1.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R1_001.fastq.gz 4640183044 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 a979d5b0-ffce-4214-b01a-05afd602eb21 545d58b91899da40cbf847109be025a3 {"aliquot_tag": "ALQ_76f08d38", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.RNA-Seq.S11_L003_R2.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R2_001.fastq.gz 5008682904 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 e920ce07-464f-4b33-8975-844c5780aa23 946e8a55d9de57a9af758553e880031d {"aliquot_tag": "ALQ_76f08d38", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.RNA-Seq.S9_L003_R1.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R1_001.fastq.gz 4329378837 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 4d3c59d0-b5c0-4299-ac8f-8b51ca8b4938 1f3b8bd284e1b355bb43b3ef07b72a02 {"aliquot_tag": "ALQ_641f0778", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.RNA-Seq.S9_L003_R2.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R2_001.fastq.gz 4611916650 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 2cc2a75d-9c3e-4dea-aa07-08a8a446e33e 0e476cc061d399f797530706a813f9af {"aliquot_tag": "ALQ_641f0778", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.RNA-Seq.transcriptome.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.transcriptome.gdc_realn.bam 10279472984 BAM transcriptome harmonized CPTAC3 caafdc9e-ef8f-4a7e-9b14-657e58d968f8 0155877ce16d6d273cb7df5c2d2cdac3 {"aliquot_tag": "ALQ_641f0778", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.transcriptome.gdc_realn.bam 13226154960 BAM transcriptome harmonized CPTAC3 15cce07d-a9af-40bc-bf73-ceed6eefa645 4e7e02504f519b467d6ea1a56f9b3e16 {"aliquot_tag": "ALQ_76f08d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.WGS.A C3N-00577 CCRCC WGS tissue_normal CPT0069190009 CPT0069190009.WholeGenome.RP-1303.bam 57243384408 BAM submitted_aligned CPTAC3 035edd67-47b8-446a-972a-7dfbd6443b13 d7d012bba50e3d24d881bf8b4d893b67 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.WGS.A.hg38 C3N-00577 CCRCC WGS tissue_normal CPT0069190009 7c1caf40-74a0-42c9-b02f-8edb7aa3fe23_wgs_gdc_realn.bam 83842614713 BAM harmonized CPTAC3 a6c4b74c-416c-4b9a-8f93-af739d339e17 6085955ac045892a57ab90486b9d2920 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.WGS.N C3N-00577 CCRCC WGS blood_normal CPT0069270002 CPT0069270002.WholeGenome.RP-1303.bam 81187262627 BAM submitted_aligned CPTAC3 811478c0-df30-43d4-a3fe-4995353ec40b 5d0a88d66353c96b2873470a981ec179 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00577.WGS.N.hg38 C3N-00577 CCRCC WGS blood_normal CPT0069270002 c934aa94-bd1f-44cb-af1f-1ef429ef6471_gdc_realn.bam 122798031864 BAM harmonized CPTAC3 3d7ac433-88ca-4a1f-9e56-ffba7629f0de c7d425dc7e8f054c9c6f776c56c70951 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00577.WGS.T C3N-00577 CCRCC WGS tumor CPT0069160006 CPT0069160006.WholeGenome.RP-1303.bam 75146386719 BAM submitted_aligned CPTAC3 113ab953-c19f-49b5-8053-3592adf84f8c 2129ff76e4e26c20a20a945ac78ce9c9 {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.WGS.T.hg38 C3N-00577 CCRCC WGS tumor CPT0069160006 bc253ff3-cdd3-4751-87e2-e3b0f7bbc296_gdc_realn.bam 115007617315 BAM harmonized CPTAC3 c9636e42-633a-46b8-82ba-c06c6eb15d2e 814b50377642bcdc39a38033677c578c {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.WXS.A C3N-00577 CCRCC WXS tissue_normal CPT0069190009 CPT0069190009.WholeExome.RP-1303.bam 25615893931 BAM submitted_aligned CPTAC3 f425c822-ee50-4607-acbc-ee92e087b424 87e3e25b4cc788ed5b72fc181d6f2a89 {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.WXS.A.hg38 C3N-00577 CCRCC WXS tissue_normal CPT0069190009 7c1caf40-74a0-42c9-b02f-8edb7aa3fe23_wxs_gdc_realn.bam 34309038511 BAM harmonized CPTAC3 163f5aa8-9a3c-4c19-adc7-5a4d19af6266 52db228ac6b86adb9924154174db4eac {"aliquot_tag": "ALQ_f4a01ae9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00577.WXS.N C3N-00577 CCRCC WXS blood_normal CPT0069270002 CPT0069270002.WholeExome.RP-1303.bam 26473524625 BAM submitted_aligned CPTAC3 60500aa4-6bcf-4cd7-8087-9dededea3b9e 88e14bea892885185133d680d32079b3 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00577.WXS.N.hg38 C3N-00577 CCRCC WXS blood_normal CPT0069270002 c934aa94-bd1f-44cb-af1f-1ef429ef6471_gdc_realn.bam 36733661474 BAM harmonized CPTAC3 516d84be-fe02-4d0f-93a4-58f010c5e381 ec0aeb273953393c7a574e0a08cd5724 {"aliquot_tag": "ALQ_5ad60fae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00577.WXS.T C3N-00577 CCRCC WXS tumor CPT0069160006 CPT0069160006.WholeExome.RP-1303.bam 33136573345 BAM submitted_aligned CPTAC3 67957f42-8ca5-4a11-a140-8f8c2fe44fe1 635e6044b24c04287a0a58027df66d02 {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00577.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069160006 bc253ff3-cdd3-4751-87e2-e3b0f7bbc296_gdc_realn.bam 45374724155 BAM harmonized CPTAC3 bba7cbc0-bcd2-4af0-8c79-9a6ef01e6b5f 3af7c4e300ec145bb1a6edf16e0b782d {"aliquot_tag": "ALQ_e64f90a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.MethArray.Green.A C3N-00578 LUAD Methylation_Array tissue_normal CPT0069370009 203027390028_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4a38c9ae-e8b2-4b71-a26d-bb4fa60147c3 cefb0163cf51100e1eeb418dbf1f0854 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.MethArray.Green.T C3N-00578 LUAD Methylation_Array tumor CPT0069360006 202178770083_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f84d9b19-3bd4-4741-86bb-0eb12ea65379 08ba2c0bf32da66143e330e8cdf84fc8 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.MethArray.Red.A C3N-00578 LUAD Methylation_Array tissue_normal CPT0069370009 203027390028_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 3109ee3d-1211-404f-9576-d75e25a52ea2 a9a04b8dbe8937c11818249222ded967 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.MethArray.Red.T C3N-00578 LUAD Methylation_Array tumor CPT0069360006 202178770083_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 ac7ad385-cedf-40d7-b890-49822d6d3026 f9f86e42e7e4d810d334585323064a7c {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.miRNA-Seq.A.hg38 C3N-00578 LUAD miRNA-Seq tissue_normal CPT0069370006 b0872c82-acb9-4460-ae57-3c0d176fd2ac_mirnaseq_gdc_realn.bam 227527816 BAM harmonized CPTAC3 90d0b7ce-2d1c-45b8-a122-5caf99afce7e a9d5318b04744bf844184f9d7aa20d28 {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.miRNA-Seq.S24_L001_R1.T C3N-00578 LUAD miRNA-Seq tumor CPT0069360009 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L001_R1_001.unaln.bam 180410493 BAM S24_L001_R1 submitted_unaligned CPTAC3 a04ee864-f9c9-4966-8d4d-e7e742e98696 4f15f8c8552a1a53ee585083b361779a {"aliquot_tag": "ALQ_3b382c33", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.miRNA-Seq.S48_L007_R1.A C3N-00578 LUAD miRNA-Seq tissue_normal CPT0069370006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L007_R1_001.unaln.bam 204811418 BAM S48_L007_R1 submitted_unaligned CPTAC3 dc303926-0c97-42f3-ac45-dc75ac37f9a6 0e54d7e1b607a3b2d646029dc831c54a {"aliquot_tag": "ALQ_96e71812", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.miRNA-Seq.T.hg38 C3N-00578 LUAD miRNA-Seq tumor CPT0069360009 d866d597-2308-4f42-8c97-ab1f9aa7a9f8_mirnaseq_gdc_realn.bam 192740386 BAM harmonized CPTAC3 f6bf63b1-327f-4f7d-9dd4-39686927d334 bad1b3536a779f7065a0fc0ff2ea3990 {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.RNA-Seq.chimeric.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.chimeric.gdc_realn.bam 166628844 BAM chimeric harmonized CPTAC3 d6d04a2e-0a93-4cf9-919a-2726ca063dac ae4f37d2946eb59dadaffbd9b060cb7c {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.RNA-Seq.chimeric.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.chimeric.gdc_realn.bam 19940346 BAM chimeric harmonized CPTAC3 2d97b434-40e6-460f-8ca4-0828f5c6fb97 e27aede613f823622b3efbca4fababe8 {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.RNA-Seq.genomic.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.genomic.gdc_realn.bam 9711180006 BAM genomic harmonized CPTAC3 f08c78ee-7c7f-4f09-9083-a064ae719a8b 2078c5f6b84b0a03a62f0498e07fbc45 {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.RNA-Seq.genomic.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.genomic.gdc_realn.bam 7825487659 BAM genomic harmonized CPTAC3 43f49c84-1b86-4447-ae64-29c296126b1f 2078aa7965f4a271508f01dcb964ca29 {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.RNA-Seq.S10_L003_R1.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R1_001.fastq.gz 3705302992 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 f6ac476d-f351-4150-bebc-909e6eedec73 e76450bedb52923f280745aa2ee47cf9 {"aliquot_tag": "ALQ_3b382c33", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.RNA-Seq.S10_L003_R2.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R2_001.fastq.gz 4025633873 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 5f22e76b-acfc-4033-9c59-f65b5eabf489 bfa2ea3a1599bf98d74b6738853f6a99 {"aliquot_tag": "ALQ_3b382c33", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.RNA-Seq.S22_L006_R1.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R1_001.fastq.gz 4461269775 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 774a69eb-0843-44ee-be33-e692efec1271 5cdb14fe63c5cb04505fac7d8b6ad0fc {"aliquot_tag": "ALQ_96e71812", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.RNA-Seq.S22_L006_R2.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R2_001.fastq.gz 4791684271 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 6876b279-666e-4501-84ab-79d09724fa33 199075c45dd10e5e56e8b40ad546a9e5 {"aliquot_tag": "ALQ_96e71812", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.RNA-Seq.transcriptome.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.transcriptome.gdc_realn.bam 9949495173 BAM transcriptome harmonized CPTAC3 152d6a62-5c8c-4d81-b00c-5b37a9c1c5cf 97be23a7178683b675a81cbb00286799 {"aliquot_tag": "ALQ_96e71812", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.RNA-Seq.transcriptome.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.transcriptome.gdc_realn.bam 12465037378 BAM transcriptome harmonized CPTAC3 b193b525-1d9f-41bb-b6e9-65b08a14f612 64f14ffb380c57bc6ebde9667364015c {"aliquot_tag": "ALQ_3b382c33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.WGS.A C3N-00578 LUAD WGS tissue_normal CPT0069370009 CPT0069370009.WholeGenome.RP-1303.bam 56208312229 BAM submitted_aligned CPTAC3 830c92bb-fba3-4307-a157-82790e0dc4d1 3526ff4ecad2d340560ae179519e8d60 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.WGS.A.hg38 C3N-00578 LUAD WGS tissue_normal CPT0069370009 1f8675db-dbe2-4bd5-8b17-4d48eb9d160e_wgs_gdc_realn.bam 82337164921 BAM harmonized CPTAC3 8f941ba5-ee0e-4cad-98d8-1f894cff7187 166b10306cc9959a807d56d7260b7bc1 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.WGS.N C3N-00578 LUAD WGS blood_normal CPT0069450002 CPT0069450002.WholeGenome.RP-1303.bam 71230318484 BAM submitted_aligned CPTAC3 7f3483a2-7ec1-4e6c-8f8a-c7576b7441cb 61ce58d1c508aea903cd6f373c16339e {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00578.WGS.N.hg38 C3N-00578 LUAD WGS blood_normal CPT0069450002 85b468e2-00ad-4d47-8a84-9fca723b10f1_gdc_realn.bam 107174031068 BAM harmonized CPTAC3 e518755b-2764-44be-8f88-0bf85e76cc7b 8ca334a54682efd5716b13d30df224f3 {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00578.WGS.T C3N-00578 LUAD WGS tumor CPT0069360006 CPT0069360006.WholeGenome.RP-1303.bam 78744838453 BAM submitted_aligned CPTAC3 c0d7dcbb-2c04-40ce-a90a-39d24fef155a 20234fa4b0f91960e614c0f8d8cd7f61 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.WGS.T.hg38 C3N-00578 LUAD WGS tumor CPT0069360006 18315848-20f3-4ef7-a5d1-c0768c4984c6_gdc_realn.bam 118028303629 BAM harmonized CPTAC3 5e1c9736-0686-4b06-88f4-f25981e90d38 b3288cf70db5466f23f65fc639308366 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.WXS.A C3N-00578 LUAD WXS tissue_normal CPT0069370009 CPT0069370009.WholeExome.RP-1303.bam 26961964746 BAM submitted_aligned CPTAC3 328ff958-183e-49ab-9836-c6714d79b4ef d01a05cc105498b4cb72c0158433d04e {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.WXS.A.hg38 C3N-00578 LUAD WXS tissue_normal CPT0069370009 1f8675db-dbe2-4bd5-8b17-4d48eb9d160e_wxs_gdc_realn.bam 36419560644 BAM harmonized CPTAC3 eaf8f1e8-cb98-4865-a266-4d9fd9e230b2 41c974f6cb8b72533ed03baf73150ff4 {"aliquot_tag": "ALQ_6580583", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00578.WXS.N C3N-00578 LUAD WXS blood_normal CPT0069450002 CPT0069450002.WholeExome.RP-1303.bam 30379016920 BAM submitted_aligned CPTAC3 c683eb3d-c6ba-4d36-bf00-cf1133ffb1ff 52f1cf6dec5c09c23236c924a065a6ab {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00578.WXS.N.hg38 C3N-00578 LUAD WXS blood_normal CPT0069450002 85b468e2-00ad-4d47-8a84-9fca723b10f1_gdc_realn.bam 41055951318 BAM harmonized CPTAC3 7cede50e-f560-49e7-84a8-8e49ef4ec37b 9df461cb82fae09fe5c974f13e32ad0d {"aliquot_tag": "ALQ_f64fbfd3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00578.WXS.T C3N-00578 LUAD WXS tumor CPT0069360006 CPT0069360006.WholeExome.RP-1303.bam 35306632145 BAM submitted_aligned CPTAC3 2c96bcb1-b48f-447d-8f87-26af6847d2bf 65c55585fe29b5377441c8449912e192 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00578.WXS.T.hg38 C3N-00578 LUAD WXS tumor CPT0069360006 18315848-20f3-4ef7-a5d1-c0768c4984c6_gdc_realn.bam 48831110243 BAM harmonized CPTAC3 627c0174-3f47-4613-a77d-f19df49e01b2 c8acd28de6901e124592f31f75fc8942 {"aliquot_tag": "ALQ_ab8731a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.MethArray.Green.A C3N-00579 LUAD Methylation_Array tissue_normal CPT0069550009 203027390089_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 047bd299-3385-4e16-b965-60a1d36bf8ed b56aea3c38d318477156aed0919fd312 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.MethArray.Green.T C3N-00579 LUAD Methylation_Array tumor CPT0069520009 202176290105_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0143e706-4caa-48e1-9c7d-7ed75660892c ed1df4aab03f171e2d04c6cc03755490 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.MethArray.Red.A C3N-00579 LUAD Methylation_Array tissue_normal CPT0069550009 203027390089_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 f58b0cfe-3611-4fc8-9f82-2bbe5ed90b0b 0093f19f343c57499536142e78031328 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.MethArray.Red.T C3N-00579 LUAD Methylation_Array tumor CPT0069520009 202176290105_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 c2081311-a97c-477e-abbd-69b3c2d0ab53 63ac33f3671c82fbb94a2f93aac9383c {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.miRNA-Seq.A.hg38 C3N-00579 LUAD miRNA-Seq tissue_normal CPT0069550006 2784f480-349a-4a71-a1f9-e1bb74af9b0e_mirnaseq_gdc_realn.bam 384201498 BAM harmonized CPTAC3 94e584b7-4626-4d84-a4fa-2fee3c9fef0f 1d445468c9ba96d031540c4eef45de1a {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.miRNA-Seq.S11_L008_R1.T C3N-00579 LUAD miRNA-Seq tumor CPT0069520006 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L008_R1_001.unaln.bam 226871677 BAM S11_L008_R1 submitted_unaligned CPTAC3 39e0eb8b-fe72-488b-82f1-a9109bb1039a eb76d13bdbec2771113e9425a363b4a9 {"aliquot_tag": "ALQ_885e747f", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.miRNA-Seq.S1_L007_R1.A C3N-00579 LUAD miRNA-Seq tissue_normal CPT0069550006 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L007_R1_001.unaln.bam 352977661 BAM S1_L007_R1 submitted_unaligned CPTAC3 96437d9f-964f-483d-aee0-90c693c59277 d62a8c25060d70298f4f1c14992bfa72 {"aliquot_tag": "ALQ_3a7ea86f", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.miRNA-Seq.T.hg38 C3N-00579 LUAD miRNA-Seq tumor CPT0069520006 0e51f041-efdc-4658-8d5f-4e5cdd9e2f08_mirnaseq_gdc_realn.bam 246067814 BAM harmonized CPTAC3 cda905b8-3106-4143-be6e-145c0eaf3fdc 911d6e9799c160bf057d32d4c4e179bb {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.RNA-Seq.chimeric.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.chimeric.gdc_realn.bam 53176565 BAM chimeric harmonized CPTAC3 73e5917c-8fe7-4c16-b9a6-72fd5c2faa67 7fe0759607f9b613bf54feb033968806 {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.RNA-Seq.chimeric.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.chimeric.gdc_realn.bam 145125280 BAM chimeric harmonized CPTAC3 5db61210-cb1f-4140-958a-a9d32d672b8f b6ea934def3422434ff8be9a355d6234 {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.RNA-Seq.genomic.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.genomic.gdc_realn.bam 8680766740 BAM genomic harmonized CPTAC3 78f0569d-9c6e-4f01-88cb-7cfee33ce236 89c344019c2a2468075f897c26eab674 {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.RNA-Seq.genomic.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.genomic.gdc_realn.bam 9180590500 BAM genomic harmonized CPTAC3 e1c93d13-2cec-445e-bd45-64d01f9fd71a aa30626722588c598532c4893dcabe85 {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.RNA-Seq.S21_L006_R1.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R1_001.fastq.gz 4006896917 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 887d82b0-c520-4966-8d54-89acb12a45b1 cd9eb427996a89f69f9f719b9c461925 {"aliquot_tag": "ALQ_3a7ea86f", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.RNA-Seq.S21_L006_R2.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R2_001.fastq.gz 3795414502 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 b83f8026-deb8-4ee0-bc10-27704ff2d3e1 d1321f8d9bf84f97e8348989713fc632 {"aliquot_tag": "ALQ_3a7ea86f", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.RNA-Seq.S4_L001_R1.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 4570401781 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 2dc06519-2912-4a7c-bb3b-0e5e6be9dea2 9721141ad078c349e75f8b1e14f4c200 {"aliquot_tag": "ALQ_885e747f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.RNA-Seq.S4_L001_R2.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4925248612 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 12a9c469-d3a1-4230-aa37-b438f58e5b5f 2682af2b05a1c89bac02f286653d4e26 {"aliquot_tag": "ALQ_885e747f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.RNA-Seq.transcriptome.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.transcriptome.gdc_realn.bam 7969596382 BAM transcriptome harmonized CPTAC3 c0551c4d-ac80-4f7c-90ff-0f5dbe6a49cc 193f6bb3cf88b979ec7b9e7bf225a507 {"aliquot_tag": "ALQ_3a7ea86f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.RNA-Seq.transcriptome.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.transcriptome.gdc_realn.bam 12307238605 BAM transcriptome harmonized CPTAC3 1ed88ddd-b7ca-4cc3-8cbd-086612d07e2b 8d43898b12b9dbd6aa7fbc17845561f4 {"aliquot_tag": "ALQ_885e747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.WGS.A C3N-00579 LUAD WGS tissue_normal CPT0069550009 CPT0069550009.WholeGenome.RP-1303.bam 60627770913 BAM submitted_aligned CPTAC3 95ec4b31-9cf5-4591-aacc-7f3c8b417995 9cde82338adebafd69edd5f3c7125027 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.WGS.A.hg38 C3N-00579 LUAD WGS tissue_normal CPT0069550009 dd05d42d-edb7-4e61-98ef-cba8adb51d3a_wgs_gdc_realn.bam 89332386200 BAM harmonized CPTAC3 d01613ea-2928-4867-97ea-6824d8c7a9b7 be46c0f09f488cf4ce94ae0512f41f1c {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.WGS.N C3N-00579 LUAD WGS blood_normal CPT0069630002 CPT0069630002.WholeGenome.RP-1303.bam 89873512591 BAM submitted_aligned CPTAC3 5fd49d1c-ffde-45a1-9b80-c4750c13fd68 1ee0aeaa13bc4a63cccdb956f659550b {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00579.WGS.N.hg38 C3N-00579 LUAD WGS blood_normal CPT0069630002 9d12c14d-211d-4cf6-af81-4fc8dd1a3137_gdc_realn.bam 135812098777 BAM harmonized CPTAC3 25253adb-3482-4cd5-b105-2885c9ad1596 034f525a991ffc2a95b8c811705dcc49 {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00579.WGS.T C3N-00579 LUAD WGS tumor CPT0069520009 CPT0069520009.WholeGenome.RP-1303.bam 84371989350 BAM submitted_aligned CPTAC3 193da44d-f8e7-4fa2-a7ea-626ce59d8396 01e7b49b761eac227f3db4b68e091f8b {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.WGS.T.hg38 C3N-00579 LUAD WGS tumor CPT0069520009 3b0ec8ca-2d1d-4773-a8f7-03788069163c_gdc_realn.bam 131776545194 BAM harmonized CPTAC3 dd45507c-d3be-448e-b5b4-a64949b03e9d b44ef401b515d50c38192178826ec425 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.WXS.A C3N-00579 LUAD WXS tissue_normal CPT0069550009 CPT0069550009.WholeExome.RP-1303.bam 24768910113 BAM submitted_aligned CPTAC3 4e31c3ca-c51d-4716-96e9-dda86610e44e 076260cf351a818b8b64a5f69ee70f57 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.WXS.A.hg38 C3N-00579 LUAD WXS tissue_normal CPT0069550009 dd05d42d-edb7-4e61-98ef-cba8adb51d3a_wxs_gdc_realn.bam 33703011159 BAM harmonized CPTAC3 3163302d-193b-48a2-9905-889364e112c2 ef5492a4ff5b1b7879bfc696e77e0565 {"aliquot_tag": "ALQ_aac1b5fe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00579.WXS.N C3N-00579 LUAD WXS blood_normal CPT0069630002 CPT0069630002.WholeExome.RP-1303.bam 27978259361 BAM submitted_aligned CPTAC3 450bab19-1e52-44da-aa6b-57394755a9cd d3394c958b1e49d01b8e9c16f0639ab6 {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00579.WXS.N.hg38 C3N-00579 LUAD WXS blood_normal CPT0069630002 9d12c14d-211d-4cf6-af81-4fc8dd1a3137_gdc_realn.bam 37838325747 BAM harmonized CPTAC3 d50d6aed-bd34-40b2-a2d6-2d60776e9e15 e81731e9eac90689283851b95170ce5b {"aliquot_tag": "ALQ_34c7eb78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00579.WXS.T C3N-00579 LUAD WXS tumor CPT0069520009 CPT0069520009.WholeExome.RP-1303.bam 36542592958 BAM submitted_aligned CPTAC3 88a7c9f6-2334-47af-b541-826098847ed8 d1615e33a3e7ec0334c7e41540c3ff12 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00579.WXS.T.hg38 C3N-00579 LUAD WXS tumor CPT0069520009 3b0ec8ca-2d1d-4773-a8f7-03788069163c_gdc_realn.bam 50611261435 BAM harmonized CPTAC3 2da9db93-353a-467b-8fbf-3ed09771baf5 60c68a69eb94145e5bc3d6e52cfab0e6 {"aliquot_tag": "ALQ_18e169ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.MethArray.Green.A C3N-00580 LUAD Methylation_Array tissue_normal CPT0069720009 203027390073_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d9f0ae5d-a222-42f2-9845-2f1d3ad081bc 5b12068aa18d40cb13ea13bc224c30c0 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.MethArray.Green.T C3N-00580 LUAD Methylation_Array tumor CPT0069700006 202184990052_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 df41d75d-9e32-4468-aebf-0bfe7e1fd913 936361e11718418316757e0d81a52276 {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.MethArray.Red.A C3N-00580 LUAD Methylation_Array tissue_normal CPT0069720009 203027390073_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 1a52bfe7-8d52-4b28-9388-ddc8d8ef59c8 beb0160139ee238931acaf32486091b9 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.MethArray.Red.T C3N-00580 LUAD Methylation_Array tumor CPT0069700006 202184990052_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 22a6641d-92a3-4d14-9545-baa4b804e65c fdbdcbf1e1147808c25ed377ce0e308d {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.miRNA-Seq.A.hg38 C3N-00580 LUAD miRNA-Seq tissue_normal CPT0069720006 490db012-6b13-4742-b471-f36d66585622_mirnaseq_gdc_realn.bam 275374710 BAM harmonized CPTAC3 9259ba44-d113-408b-8f6c-105e83d3546f e3a4c22ac6cb3bc893f2062808f3ae6b {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.miRNA-Seq.S27_L002_R1.T C3N-00580 LUAD miRNA-Seq tumor CPT0069700009 190813_UNC32-K00270_0196_AH5MCWBBXY_TATAAT_S27_L002_R1_001.unaln.bam 274466771 BAM S27_L002_R1 submitted_unaligned CPTAC3 84dbbd5e-ca7c-4cd9-8080-2870f641ddfd df8f6b6e81e5dfd1f8ad9fa6c0b76a8c {"aliquot_tag": "ALQ_2fe99b85", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.miRNA-Seq.S2_L007_R1.A C3N-00580 LUAD miRNA-Seq tissue_normal CPT0069720006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L007_R1_001.unaln.bam 256419810 BAM S2_L007_R1 submitted_unaligned CPTAC3 7e426b2c-003c-4e0c-b2fa-2549908705b8 58905d2df76382cd957d2d4960eaa75f {"aliquot_tag": "ALQ_c596d574", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.miRNA-Seq.T.hg38 C3N-00580 LUAD miRNA-Seq tumor CPT0069700009 14aedc14-7107-4fdf-83d1-78fa3576403d_mirnaseq_gdc_realn.bam 305210675 BAM harmonized CPTAC3 bc0f99e7-2817-415c-95f8-584e651364b1 81f557b8e67ed2c7f207a8a932ed17d6 {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.RNA-Seq.chimeric.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.chimeric.gdc_realn.bam 74274362 BAM chimeric harmonized CPTAC3 2ae004b2-4c5b-4e39-8dfe-578e31ac3d99 e803bd3e6406f3fb25820a48559c246d {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.RNA-Seq.chimeric.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.chimeric.gdc_realn.bam 20020809 BAM chimeric harmonized CPTAC3 7dfe7342-f771-46af-8593-a119801f6f29 18163e2bcaa0b29cc8cc718e2fb032dd {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.RNA-Seq.genomic.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.genomic.gdc_realn.bam 9094184406 BAM genomic harmonized CPTAC3 6e5c8d86-5fda-4263-ade7-e37f5a630081 04bbf180740a37b66a353d00c53ce55f {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.RNA-Seq.genomic.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.genomic.gdc_realn.bam 7270226363 BAM genomic harmonized CPTAC3 aa4bc7a3-a542-46d1-be9f-89bcbaf3a645 6dcd0e0a7674364d99ea64d1cc0f5a06 {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.RNA-Seq.S12_L003_R1.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R1_001.fastq.gz 3566734047 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 c50c7d37-c119-4937-81ae-f49516e5ba50 85be4975c116fb485155ccf150f2bd4d {"aliquot_tag": "ALQ_2fe99b85", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.RNA-Seq.S12_L003_R2.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R2_001.fastq.gz 3841244008 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 83fa11c9-a986-4ad2-8037-ad8d185c0a1e efb8296aa43e419b23f481eacda3b8eb {"aliquot_tag": "ALQ_2fe99b85", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.RNA-Seq.S20_L006_R1.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R1_001.fastq.gz 4342183966 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 e738c358-76df-42d6-b0ad-b608c5e07e41 e939556fa339d46d8ac2a2265903d4c2 {"aliquot_tag": "ALQ_c596d574", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.RNA-Seq.S20_L006_R2.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R2_001.fastq.gz 4704423548 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 890e5c7b-13c7-45bb-9744-458dc680d92c 3e9c88ed189e1bcd5a321b0b77025e3a {"aliquot_tag": "ALQ_c596d574", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.RNA-Seq.transcriptome.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.transcriptome.gdc_realn.bam 10708702180 BAM transcriptome harmonized CPTAC3 1e75e99d-5244-42b9-b705-627ca9b54ad8 7ead1828c2b78e83e6f3de473333ed00 {"aliquot_tag": "ALQ_c596d574", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.RNA-Seq.transcriptome.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.transcriptome.gdc_realn.bam 11369332850 BAM transcriptome harmonized CPTAC3 f4d7419c-00ee-417b-aeee-adf87e8a6c98 54eb2d097e557308d7a589c75f8cf5a5 {"aliquot_tag": "ALQ_2fe99b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.WGS.A C3N-00580 LUAD WGS tissue_normal CPT0069720009 CPT0069720009.WholeGenome.RP-1303.bam 69666223596 BAM submitted_aligned CPTAC3 530e1699-d963-401c-a3f5-f834554d4f7c c464985187717ff6042d176f5798bff7 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.WGS.A.hg38 C3N-00580 LUAD WGS tissue_normal CPT0069720009 cb195391-5ebe-4354-b07c-60f3a485eb8b_wgs_gdc_realn.bam 102642323498 BAM harmonized CPTAC3 2ac28301-49ff-476a-8f58-26bc91b732e7 fe2a87e05318b8c7cd1b81125df02dab {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.WGS.N C3N-00580 LUAD WGS blood_normal CPT0069800002 CPT0069800002.WholeGenome.RP-1303.bam 70647888050 BAM submitted_aligned CPTAC3 e6aff349-227c-4e5c-bfcc-f04ac3e199bc 3d9950467f630e689cbcdf88577e7ffe {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00580.WGS.N.hg38 C3N-00580 LUAD WGS blood_normal CPT0069800002 6e15d0f3-0d77-4d72-aacc-d35c497ec69c_gdc_realn.bam 106838139593 BAM harmonized CPTAC3 c9648eab-b01f-4ab0-8ad5-a63b7323aa0e 8f13c3e6240978076aa3401e8849c030 {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00580.WGS.T C3N-00580 LUAD WGS tumor CPT0069700006 CPT0069700006.WholeGenome.RP-1303.bam 67928516008 BAM submitted_aligned CPTAC3 7844c094-e966-4da0-b381-8d5bee996d2d 10c6fdbbaacc4031ef7d9f966ab986c2 {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.WGS.T.hg38 C3N-00580 LUAD WGS tumor CPT0069700006 72ed37e7-d1fe-4c50-822f-e21c597750ba_gdc_realn.bam 101339640981 BAM harmonized CPTAC3 51798e76-3023-4794-949f-612fb9f29133 507b1277f98ffa3996b8e9a08cc168b7 {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.WXS.A C3N-00580 LUAD WXS tissue_normal CPT0069720009 CPT0069720009.WholeExome.RP-1303.bam 26760905595 BAM submitted_aligned CPTAC3 f8941389-8d17-4d30-9bfe-490da25f57c6 a0b1e64cbb98a9838f0f7c4a9003e405 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.WXS.A.hg38 C3N-00580 LUAD WXS tissue_normal CPT0069720009 cb195391-5ebe-4354-b07c-60f3a485eb8b_wxs_gdc_realn.bam 36662408680 BAM harmonized CPTAC3 50807bdd-58bf-4b01-bb03-5acec354b22e 31a5105156d114a3c6c05f40fb09b672 {"aliquot_tag": "ALQ_5529c8e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00580.WXS.N C3N-00580 LUAD WXS blood_normal CPT0069800002 CPT0069800002.WholeExome.RP-1303.bam 40081364322 BAM submitted_aligned CPTAC3 42860b7d-6bff-4cfc-b045-5c2a28a25b4c 45a8584b580a475601a3ce227c65fccc {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00580.WXS.N.hg38 C3N-00580 LUAD WXS blood_normal CPT0069800002 6e15d0f3-0d77-4d72-aacc-d35c497ec69c_gdc_realn.bam 56038595708 BAM harmonized CPTAC3 83ec5562-2cf9-4ddd-8c00-45b3a6d470e1 9b8949a2d52f3e3e3edce8dfe29f2cc4 {"aliquot_tag": "ALQ_496df0d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00580.WXS.T C3N-00580 LUAD WXS tumor CPT0069700006 CPT0069700006.WholeExome.RP-1303.bam 37097845897 BAM submitted_aligned CPTAC3 d98c9022-538b-46f1-a8f3-17d031b2ab41 8ee63d15fd405f1f808aa16cd6d7c1de {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00580.WXS.T.hg38 C3N-00580 LUAD WXS tumor CPT0069700006 72ed37e7-d1fe-4c50-822f-e21c597750ba_gdc_realn.bam 51193005090 BAM harmonized CPTAC3 57a9a0dd-4854-4e7b-8214-c7701474fe6d dbe58610eaced2705cc239e122a1849c {"aliquot_tag": "ALQ_bf568614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_11196721.miRNA-Seq.S5_L004_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081970006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATTTT_S5_L004_R1_001.unaln.bam 327645548 BAM S5_L004_R1 submitted_unaligned CPTAC3 99b94604-81ec-4d48-907e-716d1acc95af c69c388e3a3af34853965f11a3f8fd71 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_11196721.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081970006 00366798-fac0-4ca4-9a30-4e16cede240b_mirnaseq_gdc_realn.bam 361132425 BAM harmonized CPTAC3 53d12e0a-d311-4122-9ed2-3669628a5d2c d6beabb83de31e8b57bff4415dd8efc8 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_11196721.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.chimeric.gdc_realn.bam 201061834 BAM chimeric harmonized CPTAC3 e1b2ded7-c109-412e-ad93-cc3d12ed0f0f 06996787d88f5081945bd13fc8ec8f5d {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_11196721.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.genomic.gdc_realn.bam 8344442177 BAM genomic harmonized CPTAC3 8ea07771-646a-46fe-90fb-df4380c93891 e025c1b1fbe53cb2b0735c30e79d139d {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_11196721.RNA-Seq.S13_L004_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R1_001.fastq.gz 4092568482 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 980a3cfc-b38a-4492-ad63-75639c800e22 a7b163d7830aeb12b463ff1ebf0d0405 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_11196721.RNA-Seq.S13_L004_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R2_001.fastq.gz 4608167933 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 5774ceef-ed62-42c6-bc2e-e854e2853ef4 f0b5b332152ad17ae6637a74fcaad534 {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_11196721.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.transcriptome.gdc_realn.bam 10321705528 BAM transcriptome harmonized CPTAC3 94b32025-6b3d-44ff-8144-df6d6e1ccdf6 7f988866b8e0dec8eb6d839a54b18a4a {"aliquot_tag": "DUP_11196721", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_2561edf5.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0082000009 204367470124_R02C01_Grn.idat 13677882 IDAT Green NA CPTAC3 37b8b01b-8c19-4995-a162-6b8be926e7c9 9ac977b347812205ce2e9e88ca26b13b {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_2561edf5.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0082000009 204367470124_R02C01_Red.idat 13677882 IDAT Red NA CPTAC3 9c885e48-c8a0-4c8c-9f67-898f256a2578 fa21fd146f076b42a90df5907fd2e87c {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_2561edf5.WGS.T C3N-00646 CCRCC WGS tumor CPT0082000009 CPT0082000009.WholeGenome.RP-2158.bam 23065839447 BAM submitted_aligned CPTAC3 6ecfe625-d073-4c21-9dda-10085982409c 0a330ea6f832e0913e93b50d0d9c329f {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_2561edf5.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0082000009 174b44d6-d8b9-4b64-9ff4-44740bcf6de3_wgs_gdc_realn.bam 66376283118 BAM harmonized CPTAC3 d755260b-7dca-4c69-86ef-fd97341e1958 508aebfe53757fe7d1af01a782091fd8 {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_2561edf5.WXS.T C3N-00646 CCRCC WXS tumor CPT0082000009 CPT0082000009.WholeExome.RP-1303.bam 21753433747 BAM submitted_aligned CPTAC3 5ce44bf2-33d0-45a3-a24b-4af3178f2c5a f4a989433bbe2d7bcf6d257d5c3cbf14 {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_2561edf5.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0082000009 174b44d6-d8b9-4b64-9ff4-44740bcf6de3_wxs_gdc_realn.bam 30005659322 BAM harmonized CPTAC3 5b0c1ac9-6e44-40ab-9c63-3bc9a0a4b89c d6d741ea3f455103e476af808dda284b {"aliquot_tag": "DUP_2561edf5", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_74f1ddf7.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0081980008 204372030023_R01C01_Grn.idat 13677895 IDAT Green NA CPTAC3 87c1ec50-0cf1-4dd8-827c-a224101e3eac 2e029695a24693566b3ab8aaf99a771e {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_74f1ddf7.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0081980008 204372030023_R01C01_Red.idat 13677895 IDAT Red NA CPTAC3 842f8742-31bb-4626-95f5-fd60711a85e2 e440a5559c1fd06691b029b02c212808 {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_74f1ddf7.WGS.T C3N-00646 CCRCC WGS tumor CPT0081980008 CPT0081980008.WholeGenome.RP-2158.bam 31569823975 BAM submitted_aligned CPTAC3 5d0224bc-1902-420c-b79b-4064065a3c27 48ca33447647be3d42b2f78427b5363a {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_74f1ddf7.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0081980008 ac290967-e06a-48cc-9d8a-0a687a8b1fc8_wgs_gdc_realn.bam 97841636613 BAM harmonized CPTAC3 e7b26e1b-0282-47fb-bc22-3f373c8f0149 317993dce43ca5d5cee8c6be756e55fb {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_74f1ddf7.WXS.T C3N-00646 CCRCC WXS tumor CPT0081980008 CPT0081980008.WholeExome.RP-1303.bam 20906214143 BAM submitted_aligned CPTAC3 ee040be6-4430-4591-9d9c-a63f92a63546 7406045262207e71d4469344eec53c68 {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_74f1ddf7.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0081980008 ac290967-e06a-48cc-9d8a-0a687a8b1fc8_wxs_gdc_realn.bam 29537925816 BAM harmonized CPTAC3 777ad0ea-81a9-405b-a300-59008cbee1ae 705e650900fa2ba5b25bff32bbeb64d1 {"aliquot_tag": "DUP_74f1ddf7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_81a67ab0.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0081970009 204372030087_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 3f491707-af8b-492f-86ef-ee19e4d2e851 f463511ef9da13dac0b59709845c68a7 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_81a67ab0.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0081970009 204372030087_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 bc5eb53e-19b0-4e15-b881-894da8df7efd 2c7ab8ca84c07d5235b2541df83120a2 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_81a67ab0.WGS.T C3N-00646 CCRCC WGS tumor CPT0081970009 CPT0081970009.WholeGenome.RP-2158.bam 21135692138 BAM submitted_aligned CPTAC3 6ae08801-7122-4acc-93b6-7583eb12031f 2f41c32b8cb58f8fc5f0562938b06a03 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_81a67ab0.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0081970009 6924323a-8bd8-4aa2-8a97-0c739132af78_wgs_gdc_realn.bam 60031371647 BAM harmonized CPTAC3 9d04f641-1d4d-436f-bc50-09ee0229f0dd cd41b79fbddfb8cdf3d5e1e19f56b9a6 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_81a67ab0.WXS.T C3N-00646 CCRCC WXS tumor CPT0081970009 CPT0081970009.WholeExome.RP-1303.bam 19796533988 BAM submitted_aligned CPTAC3 b77ceaed-8ed8-4315-97e9-97f20598bac4 08c738067a4c058f8dbc128995d40f77 {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_81a67ab0.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0081970009 6924323a-8bd8-4aa2-8a97-0c739132af78_wxs_gdc_realn.bam 26788481843 BAM harmonized CPTAC3 e39f321e-de17-4224-8a55-a8fd6558295c fbf43a2c0c60309f5892080da9c938ab {"aliquot_tag": "DUP_81a67ab0", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_a40a14a.miRNA-Seq.S48_L004_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081980005 200526_UNC32-K00270_0248_BHH7WFBBXY_GGTAGC_S48_L004_R1_001.unaln.bam 289942848 BAM S48_L004_R1 submitted_unaligned CPTAC3 247bcbef-5400-419f-8db8-acb8b86ade92 30c455b3d90cb4af6d08eac900ee39a3 {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_a40a14a.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081980005 952d3262-f49b-4361-9f32-697c75935506_mirnaseq_gdc_realn.bam 326665666 BAM harmonized CPTAC3 10f9d0b6-0845-4156-9b5d-8b535ea9414e f08f4da6501233a413e9e8e3e62acca9 {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_a40a14a.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.chimeric.gdc_realn.bam 106248398 BAM chimeric harmonized CPTAC3 373be1f0-c685-4241-bc38-eb2aefd7ee43 87d845d52a36bfad02e2d2ae0647ef5e {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_a40a14a.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.genomic.gdc_realn.bam 8375615893 BAM genomic harmonized CPTAC3 053dedc6-4b87-48e8-bbd4-720db0966efc 295f46af1628bfde36f2f3085cebb00d {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_a40a14a.RNA-Seq.S2_L001_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R1_001.fastq.gz 3845346265 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 787e6ab3-0537-4dae-876f-591c36d1835d 1de65ffd9ea9afbe322929e0124899cd {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_a40a14a.RNA-Seq.S2_L001_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R2_001.fastq.gz 4730561082 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 afa8aabc-841a-4780-88bd-096696b28751 fdf932132bf3cd055a22f4aa53baf39e {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_a40a14a.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.transcriptome.gdc_realn.bam 9974597410 BAM transcriptome harmonized CPTAC3 8a7096b1-aab4-4c81-a203-ea5f4c8bc8e1 51d54ec3c3266854ea77e56efe5d9ba3 {"aliquot_tag": "DUP_a40a14a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_b5def064.miRNA-Seq.S6_L004_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0082000006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCAACA_S6_L004_R1_001.unaln.bam 191987397 BAM S6_L004_R1 submitted_unaligned CPTAC3 077f2974-0d74-4a69-a446-9200ffd815aa dadce38f0225e5e794c9c6f79f829cbb {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_b5def064.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0082000006 4da47641-53c8-48f2-aab9-7711dd6efa14_mirnaseq_gdc_realn.bam 216197628 BAM harmonized CPTAC3 8e50ba29-1709-443e-9d9a-1c3bb742c5aa beb27dc43a27f8e7f340e11315f858e9 {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_b5def064.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.chimeric.gdc_realn.bam 127443137 BAM chimeric harmonized CPTAC3 2628656b-7138-476f-80be-92e1e2ff89da bfe7e322e7bcc7ddc5d3abe9d2df231d {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_b5def064.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.genomic.gdc_realn.bam 6944732932 BAM genomic harmonized CPTAC3 ba426202-d168-4bb8-9938-0b55f8b89cd7 b8ebd4cf9745d1d21da1dfa0a6291de6 {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_b5def064.RNA-Seq.S15_L004_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 3334806323 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 58135a5f-972c-46ae-b682-2bceead9893f dadcb3134b1d81906b352540bd555de2 {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_b5def064.RNA-Seq.S15_L004_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 3831563373 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 85e77e19-8680-44c9-814f-638fd0c5444e 29cf078ec0ff2f012458d7437393165e {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.DUP_b5def064.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.transcriptome.gdc_realn.bam 9259926899 BAM transcriptome harmonized CPTAC3 2594fe19-68af-46a2-a0e2-2bba635a7f15 2add3b627f8d476d90a7e3d80f7e8f7d {"aliquot_tag": "DUP_b5def064", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.MethArray.Green.A C3N-00646 CCRCC Methylation_Array tissue_normal CPT0082010009 204930640061_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c2e3843a-d03e-4570-8d7f-25979fafe0cc 8909becbd4e4088c6b8a511b170dc30b {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.MethArray.Green.T C3N-00646 CCRCC Methylation_Array tumor CPT0081990006 202184900111_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 618149c4-73cf-4741-8f97-94c76712edc4 5102866a074a0f68528b3bb254727788 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.MethArray.Red.A C3N-00646 CCRCC Methylation_Array tissue_normal CPT0082010009 204930640061_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 ea6180fe-1488-4dea-81dd-051c1b833632 761cb68e34f0c799626ee65fb2aa47f7 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.MethArray.Red.T C3N-00646 CCRCC Methylation_Array tumor CPT0081990006 202184900111_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 3e36a198-fe37-420a-8db3-85c47f6edeea 96e6091a86a4b7b91c5afeb14334a713 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.miRNA-Seq.A.hg38 C3N-00646 CCRCC miRNA-Seq tissue_normal CPT0082010006 cb0435c2-ec77-448e-bce6-89b7fa2015d2_mirnaseq_gdc_realn.bam 216218643 BAM harmonized CPTAC3 2bc6a846-26aa-4608-9cca-eaab78676a82 914ea05e1236f93fcf02e3fff8c99614 {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.miRNA-Seq.S27_L002_R1.A C3N-00646 CCRCC miRNA-Seq tissue_normal CPT0082010006 181108_UNC31-K00269_0163_BH23TVBBXY_ATTCCT_S27_L002_R1_001.unaln.bam 195010889 BAM S27_L002_R1 submitted_unaligned CPTAC3 ead4f01f-2e32-41da-8208-63d2b51d2835 80e5204f78784eb157e39867b833f6f0 {"aliquot_tag": "ALQ_88bed9d4", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.miRNA-Seq.S46_L002_R1.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081990009 181113_UNC31-K00269_0164_AH23NNBBXY_CGTACG_S46_L002_R1_001.unaln.bam 245302766 BAM S46_L002_R1 submitted_unaligned CPTAC3 a294dd5b-3814-42c0-a477-de371ca9e62e e3ccfaf352ce8d111cbe27ff0f95919f {"aliquot_tag": "ALQ_3e96c4d1", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081990009 73ba6cb2-5933-4c53-9012-7bccf41fb2be_mirnaseq_gdc_realn.bam 267628726 BAM harmonized CPTAC3 f839995c-6dfb-442e-a278-d0709a870eef 59eb5ba6f50463a14ae5af1a62b623cd {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.RNA-Seq.chimeric.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.chimeric.gdc_realn.bam 63960130 BAM chimeric harmonized CPTAC3 b1f69044-a57e-404e-95d7-200466711dec 792eb47ab2b0f771c8a1e09b9d36c481 {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.chimeric.gdc_realn.bam 77721060 BAM chimeric harmonized CPTAC3 af99698d-cf6a-4b6a-b7b0-936ea8e81676 312a65c7ed9d97c9a270e9ab2638241e {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.RNA-Seq.genomic.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.genomic.gdc_realn.bam 8572819800 BAM genomic harmonized CPTAC3 1c07d9b7-ba7f-4e51-b94f-efc917eb584c e828e7471bf613ebc63de580a8df8e0d {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.genomic.gdc_realn.bam 7240241221 BAM genomic harmonized CPTAC3 e88e9951-a013-4c34-b84c-de284309a274 0c884e8dad4038c861f95895e4aff593 {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.RNA-Seq.S4_L001_R1.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R1_001.fastq.gz 4063559955 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 5b16b2e1-c184-43dd-8b14-44064ff163da a27e28e84f5db3523929a77401140bce {"aliquot_tag": "ALQ_88bed9d4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.RNA-Seq.S4_L001_R2.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R2_001.fastq.gz 4438333168 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 85a46f67-ca77-419b-af2b-936000d066e6 13077472c88861794f700f30b27f2315 {"aliquot_tag": "ALQ_88bed9d4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.RNA-Seq.S7_L008_R1.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R1_001.fastq.gz 3514252397 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 5d6d5ed2-ad55-4495-98ad-1c29f1d4eae6 5d4f4640c9b399c722d024cd1525f8dd {"aliquot_tag": "ALQ_3e96c4d1", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.RNA-Seq.S7_L008_R2.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R2_001.fastq.gz 3858205480 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 59f1b810-71de-45d3-9d50-96e3366fbe8f 935e6da879a1d69d92de13f90fd16f9c {"aliquot_tag": "ALQ_3e96c4d1", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.RNA-Seq.transcriptome.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.transcriptome.gdc_realn.bam 9609610273 BAM transcriptome harmonized CPTAC3 7aac4c0e-4d4a-4f70-bb8d-5042c0b52bbb 1367d1b724f0447dc621b682096031d4 {"aliquot_tag": "ALQ_88bed9d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.transcriptome.gdc_realn.bam 8929249617 BAM transcriptome harmonized CPTAC3 f124fd01-8dad-4b9d-b1f6-5013c217af38 8cfebd012e666e400b6725f96ff48e91 {"aliquot_tag": "ALQ_3e96c4d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.WGS.A C3N-00646 CCRCC WGS tissue_normal CPT0082010009 CPT0082010009.WholeGenome.RP-1303.bam 57594115284 BAM submitted_aligned CPTAC3 e560fcb0-1c4b-4b2c-890e-e5695dae134a 4bbefa7956c7c5e5f2b8dc9fc8ddd68a {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.WGS.A.hg38 C3N-00646 CCRCC WGS tissue_normal CPT0082010009 7b64790d-6ba3-4ed9-8997-b22c0c22348c_wgs_gdc_realn.bam 83937645760 BAM harmonized CPTAC3 4ab09da2-0bb0-4e43-995c-2a820e72e7bf c984cb3657aabafa99606f00bcb1b0f5 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.WGS.N C3N-00646 CCRCC WGS blood_normal CPT0082030002 CPT0082030002.WholeGenome.RP-1303.bam 70407859557 BAM submitted_aligned CPTAC3 803a4e52-a2bb-4e72-b18e-e998b26fc81b 4bc5a6888c448f4dcc1eec9e32a4d1a1 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00646.WGS.N.hg38 C3N-00646 CCRCC WGS blood_normal CPT0082030002 cd161335-d26a-4e88-9cbf-412997314bc7_gdc_realn.bam 106674332920 BAM harmonized CPTAC3 283d6b63-f235-4335-9810-de281d782b0b 8b6fd8e229c9cdce3e5e3fa9b6cf1184 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00646.WGS.T C3N-00646 CCRCC WGS tumor CPT0081990006 CPT0081990006.WholeGenome.RP-1303.bam 68730745075 BAM submitted_aligned CPTAC3 e864d4a5-c3c5-460e-8f89-e7f4203edcaa 052bb80f3d7910c8c6824c5731d4a159 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.WGS.T.hg38 C3N-00646 CCRCC WGS tumor CPT0081990006 decf1bd7-19b4-488c-a3ee-fec1eab0652d_gdc_realn.bam 102097246594 BAM harmonized CPTAC3 a646095d-8ce5-4b13-b663-88c237105880 0d737a9ac962dc64c7d5efa30c7655b4 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.WXS.A C3N-00646 CCRCC WXS tissue_normal CPT0082010009 CPT0082010009.WholeExome.RP-1303.bam 46568528796 BAM submitted_aligned CPTAC3 a3cad1a5-0828-42bf-8100-89d423dc52d0 19eb4d8657262d67162c2d51a131db14 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.WXS.A.hg38 C3N-00646 CCRCC WXS tissue_normal CPT0082010009 7b64790d-6ba3-4ed9-8997-b22c0c22348c_wxs_gdc_realn.bam 62721824878 BAM harmonized CPTAC3 0d2df8d1-4799-457e-a213-3784821eab49 e2bd754cb313c46cbfdb5d117624b427 {"aliquot_tag": "ALQ_1801c445", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00646.WXS.N C3N-00646 CCRCC WXS blood_normal CPT0082030002 CPT0082030002.WholeExome.RP-1303.bam 26787959958 BAM submitted_aligned CPTAC3 88bb2978-cc22-4793-bd92-d547c6db4bba fc90b05693024a91f83e26b7d5dd1942 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00646.WXS.N.hg38 C3N-00646 CCRCC WXS blood_normal CPT0082030002 cd161335-d26a-4e88-9cbf-412997314bc7_gdc_realn.bam 36018660531 BAM harmonized CPTAC3 76ce08e4-2fd8-40e7-a591-2bfb0a3826d7 0047bc5ac24651d2ad985f28cc064a22 {"aliquot_tag": "ALQ_f5134ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00646.WXS.T C3N-00646 CCRCC WXS tumor CPT0081990006 CPT0081990006.WholeExome.RP-1303.bam 37964291811 BAM submitted_aligned CPTAC3 09c48bdf-dc11-4f57-ba46-9f51cd5d0886 196e492023f8db598d12d5bcb64e5314 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00646.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0081990006 decf1bd7-19b4-488c-a3ee-fec1eab0652d_gdc_realn.bam 53804459969 BAM harmonized CPTAC3 8c875266-61e6-4945-8e8b-c603b9b00b4b 4eedc060754705e3497d21a5f33dc6a3 {"aliquot_tag": "ALQ_ae29d940", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.MethArray.Green.A C3N-00647 CCRCC Methylation_Array tissue_normal CPT0210440006 204930630107_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e5a7a1dc-6c85-42b8-8e41-68113595cc30 d88d95a889aa705828b5d3c7538f8dfe {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.MethArray.Green.T C3N-00647 CCRCC Methylation_Array tumor CPT0210400010 203219760074_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 89f22404-d3e9-47d9-a9e3-5e47cea0a2f3 c80c9858d046b444eed8f7c500a328bd {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.MethArray.Red.A C3N-00647 CCRCC Methylation_Array tissue_normal CPT0210440006 204930630107_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 560eac63-1d40-45f6-90c1-fa72d3469821 6fb9151753098a796480b9809609c5f1 {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.MethArray.Red.T C3N-00647 CCRCC Methylation_Array tumor CPT0210400010 203219760074_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 cbd595f1-3f6e-475e-a544-2e8166219384 d446b91b6d2c8b184e07b65a443fac84 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.miRNA-Seq.A.hg38 C3N-00647 CCRCC miRNA-Seq tissue_normal CPT0210440009 eecc143b-740f-48ca-9790-a7d2543534d2_mirnaseq_gdc_realn.bam 215764881 BAM harmonized CPTAC3 b63ecb40-7770-40cc-b835-7fd136c3a157 755e2b04dd8751f9b2210a1566374f6a {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.miRNA-Seq.S15_L003_R1.A C3N-00647 CCRCC miRNA-Seq tissue_normal CPT0210440009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCAACA_S15_L003_R1_001.unaln.bam 197692655 BAM S15_L003_R1 submitted_unaligned CPTAC3 deca7625-a479-4aeb-b350-ed055199cccb 515d85a051eefa9c80aae0e0af4134e1 {"aliquot_tag": "ALQ_ed562ba7", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.miRNA-Seq.S25_L008_R1.T C3N-00647 CCRCC miRNA-Seq tumor CPT0210400008 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L008_R1_001.unaln.bam 315377914 BAM S25_L008_R1 submitted_unaligned CPTAC3 d656b556-72bf-44f5-a889-8f714b044de5 d91e568e85e9df40cb39415e62b43867 {"aliquot_tag": "ALQ_6fd1bdf1", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.miRNA-Seq.T.hg38 C3N-00647 CCRCC miRNA-Seq tumor CPT0210400008 52ec4fc9-1614-4ad9-9cce-dcf6b764bca8_mirnaseq_gdc_realn.bam 346673868 BAM harmonized CPTAC3 a94f362b-95d5-45f2-bfba-b0d92fb49fc6 c25ca0bfff9fa207c4b5f081c36e58f9 {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.RNA-Seq.chimeric.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.chimeric.gdc_realn.bam 69974739 BAM chimeric harmonized CPTAC3 a3f4c5b7-ecb7-4fb1-b9f6-e5edd37532ee 87506f61f602c4bd6554c802dbc68556 {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.RNA-Seq.chimeric.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.chimeric.gdc_realn.bam 334879150 BAM chimeric harmonized CPTAC3 ab6212e6-8e5f-4e35-ab0d-c4d9a02cc040 12e001451ad806558337bbbccd7087d8 {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.RNA-Seq.genomic.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.genomic.gdc_realn.bam 8035826121 BAM genomic harmonized CPTAC3 efd4b1a1-6650-4cdc-a9ac-066e8fddf8dc 1e5a639e9283f324155f1538c6eaa10f {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.RNA-Seq.genomic.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.genomic.gdc_realn.bam 7210021290 BAM genomic harmonized CPTAC3 476a7086-5d5d-4364-bc0c-f549ef8f6175 74b621321ae16c42480bd88843a061cd {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.RNA-Seq.S12_L003_R1.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R1_001.fastq.gz 3870673538 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 0958c9a6-369b-446a-86c0-ecc7e7d30019 ab5fa4f25fea7ba87a2eafd91c9c342c {"aliquot_tag": "ALQ_ed562ba7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.RNA-Seq.S12_L003_R2.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R2_001.fastq.gz 4267603425 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 686db238-4c69-4121-bfe6-1068f0b41ffb 484a2c83903861373b32a81706321c1d {"aliquot_tag": "ALQ_ed562ba7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.RNA-Seq.S14_L004_R1.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3001959351 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 6ff40b7b-a248-4450-83f0-fa2d4ab953e5 3bbeee77406cf3fc074c9127d1fa3026 {"aliquot_tag": "ALQ_6fd1bdf1", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.RNA-Seq.S14_L004_R2.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3277118265 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 4518b250-94cf-447c-910e-a7a1d5a39dd6 5b1e5db428198e8583d15611c466dfb0 {"aliquot_tag": "ALQ_6fd1bdf1", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.RNA-Seq.transcriptome.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.transcriptome.gdc_realn.bam 9392145456 BAM transcriptome harmonized CPTAC3 a6c33467-852d-4f2e-9f8f-6bbc4157c05e ee0fb55d0c7d21c9c81f8cd11ee8eab1 {"aliquot_tag": "ALQ_ed562ba7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.RNA-Seq.transcriptome.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.transcriptome.gdc_realn.bam 7078075094 BAM transcriptome harmonized CPTAC3 1310f290-d411-40f1-bc00-4e8858bb7dfa 815584c63bc80e50916fba6c3301bbf6 {"aliquot_tag": "ALQ_6fd1bdf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.WGS.N C3N-00647 CCRCC WGS blood_normal CPT0210520002 CPT0210520002.WholeGenome.RP-1303.bam 60176333204 BAM submitted_aligned CPTAC3 d81b93c2-8f20-4c98-8bcc-b314e1e74bd9 63b4cce799a44b2b3d5e00ddc51ae717 {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00647.WGS.N.hg38 C3N-00647 CCRCC WGS blood_normal CPT0210520002 992a2e30-9acc-44fb-96ed-e84ebe4f98f3_wgs_gdc_realn.bam 87429971417 BAM harmonized CPTAC3 aeef39b1-87b9-4242-af72-31c6a0d4682b d4f5f37c82d4b2699723dae1934161fe {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00647.WGS.T C3N-00647 CCRCC WGS tumor CPT0210400010 CPT0210400010.WholeGenome.RP-1303.bam 61913507239 BAM submitted_aligned CPTAC3 9c9ee284-1e7a-4565-a7b4-ddee29eb9317 bb23daf060232de84c932032825aeb72 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.WGS.T.hg38 C3N-00647 CCRCC WGS tumor CPT0210400010 adc4cdb2-337e-4f09-9dac-aed4b9566ed8_wgs_gdc_realn.bam 90350301604 BAM harmonized CPTAC3 f6dceaf1-e428-4b81-9215-828b86c8e45f 6453003c64d7506b5119f31ed7624c28 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.WXS.A C3N-00647 CCRCC WXS tissue_normal CPT0210440006 CPT0210440006.WholeExome.RP-1303.bam 22173332114 BAM submitted_aligned CPTAC3 977c91cf-ebf4-4b13-a1ed-9054ec7f5533 6884f57a32160a6afdfe2f2404b6992d {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.WXS.A.hg38 C3N-00647 CCRCC WXS tissue_normal CPT0210440006 0f8a4976-c745-4bc9-a1f8-631996bdafb5_wxs_gdc_realn.bam 30569939486 BAM harmonized CPTAC3 b55ada3d-1d2b-4864-a3a3-13eec4760dca afa3b2f4b439f28b510fbac662837cfd {"aliquot_tag": "ALQ_7de93636", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00647.WXS.N C3N-00647 CCRCC WXS blood_normal CPT0210520002 CPT0210520002.WholeExome.RP-1303.bam 22563240731 BAM submitted_aligned CPTAC3 d2e24b0b-0532-4688-bad3-86f98ff2c554 e41235078012f964d51f0ff4a0f51804 {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00647.WXS.N.hg38 C3N-00647 CCRCC WXS blood_normal CPT0210520002 992a2e30-9acc-44fb-96ed-e84ebe4f98f3_wxs_gdc_realn.bam 31614753039 BAM harmonized CPTAC3 a8a11eb2-00a7-4341-96c2-9789eb546534 aecd37951f8804259324917e0dfb9338 {"aliquot_tag": "ALQ_3e98d42a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00647.WXS.T C3N-00647 CCRCC WXS tumor CPT0210400010 CPT0210400010.WholeExome.RP-1303.bam 25678106804 BAM submitted_aligned CPTAC3 9032cd28-050a-464c-9211-e076c994c3bd cbda42e700961248612d3b0b108ecb03 {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00647.WXS.T.hg38 C3N-00647 CCRCC WXS tumor CPT0210400010 adc4cdb2-337e-4f09-9dac-aed4b9566ed8_wxs_gdc_realn.bam 35378460557 BAM harmonized CPTAC3 d3a42a86-a482-4bce-a271-5ba822cc04f5 0ebebca1d7e3ed4c9ecb7b267ac033ee {"aliquot_tag": "ALQ_78110482", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00651.miRNA-Seq.S31_L002_R1.Tbm C3N-00651 AML miRNA-Seq tumor_bone_marrow CPT0437960002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGTACG_S31_L002_R1_001.unaln.bam 286710127 BAM S31_L002_R1 submitted_unaligned CPTAC3 53a14fd9-daa4-439e-a904-3b8098f8943e ad4590b65b766d90edc73e563c620710 {"aliquot_tag": "ALQ_4842f2e8", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.miRNA-Seq.Tbm.hg38 C3N-00651 AML miRNA-Seq tumor_bone_marrow CPT0437960002 ff790ae0-7c0a-4b28-974a-ce8d90c7e2f1_mirnaseq_gdc_realn.bam 322519562 BAM harmonized CPTAC3 32aeb272-8f3c-47ab-87c6-e2ec25143b07 282605612cfa75361840e792116eb288 {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.RNA-Seq.chimeric.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.chimeric.gdc_realn.bam 513840253 BAM chimeric harmonized CPTAC3 c15402d2-3c02-4f0a-9b3b-4351cda7b5ff 0a424b4be57fba257ae478987d5a740b {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.RNA-Seq.genomic.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.genomic.gdc_realn.bam 7288669934 BAM genomic harmonized CPTAC3 95909fff-4b0d-4997-9d6c-0b2856f485a7 31d4bd81718145824e32d90214732c17 {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.RNA-Seq.S13_L004_R1.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R1_001.fastq.gz 3593053427 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 3d2903bf-750c-414c-ae65-b73f000afdd5 ee88e0310ba9e44ac88f5aa866753483 {"aliquot_tag": "ALQ_4842f2e8", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.RNA-Seq.S13_L004_R2.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R2_001.fastq.gz 3851693751 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 1f438bff-6f91-4102-ba36-a6fb12ff7561 c17fcd42560043552e2838c2130ed018 {"aliquot_tag": "ALQ_4842f2e8", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.RNA-Seq.transcriptome.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.transcriptome.gdc_realn.bam 7332189722 BAM transcriptome harmonized CPTAC3 d17e1cc2-2d75-4fa5-8a0d-134dc84b5ebc 9f66e6e67221ec87ae498944da2c1259 {"aliquot_tag": "ALQ_4842f2e8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.WGS.Tbm C3N-00651 AML WGS tumor_bone_marrow CPT0437950001 CPT0437950001.WholeGenome.RP-2158.bam 45869670373 BAM submitted_aligned CPTAC3 6b612e5c-013c-47b7-a319-7e5f4864733e c384ba33a9ac19c5c94635a046deb43f {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.WGS.Tbm.hg38 C3N-00651 AML WGS tumor_bone_marrow CPT0437950001 a34221e5-44cf-4b5e-9ee9-a6772f2846d7_wgs_gdc_realn.bam 137483279509 BAM harmonized CPTAC3 d8f76556-392f-4379-ba91-5dcf2251c503 6346e291eaf277724b845a6c596d9669 {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.WXS.Nbc C3N-00651 AML WXS buccal_normal CPT0435060001 CPT0435060001.WholeExome.RP-1303.bam 23777760803 BAM submitted_aligned CPTAC3 e0866eae-e86e-43cc-a85e-bfdeaecd506f 0da75ba3fe228a321f7e1f29725dc19a {"aliquot_tag": "ALQ_61dbe3b3", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00651.WXS.Nbc.hg38 C3N-00651 AML WXS buccal_normal CPT0435060001 342bdbdb-2148-431d-ad39-6140d9c335fa_wxs_gdc_realn.bam 32128775184 BAM harmonized CPTAC3 1a23b98c-d20b-4f53-b383-2649a57d6fd6 a544b580a051bd2d5b7d73f8cceab4f3 {"aliquot_tag": "ALQ_61dbe3b3", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3N-00651.WXS.Tbm C3N-00651 AML WXS tumor_bone_marrow CPT0437950001 CPT0437950001.WholeExome.RP-1303.bam 25690540966 BAM submitted_aligned CPTAC3 b4f0dc09-b1de-4d77-88fc-aa5021f52f44 829e6fe875bccb82740b75c06efce0ef {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00651.WXS.Tbm.hg38 C3N-00651 AML WXS tumor_bone_marrow CPT0437950001 a34221e5-44cf-4b5e-9ee9-a6772f2846d7_wxs_gdc_realn.bam 35473400704 BAM harmonized CPTAC3 dabeb10c-d42c-4221-846a-63824ffc31ee fe7d0d5f3b1217dec1d8971ea6563944 {"aliquot_tag": "ALQ_96ebd982", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3N-00656.MethArray.Green.Tbm C3N-00656 AML Methylation_Array tumor_bone_marrow CPT0438050002 205705520145_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c4331380-5326-4ccb-adb5-623596ce0823 f3c47840788f58cf27430fdbe32f2e82 {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.MethArray.Red.Tbm C3N-00656 AML Methylation_Array tumor_bone_marrow CPT0438050002 205705520145_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 7f50ba81-921c-4bd1-852f-080be1eec208 e9c18f96de2e2d6e58c4b1a52487a489 {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.miRNA-Seq.S33_L002_R1.Tbm C3N-00656 AML miRNA-Seq tumor_bone_marrow CPT0438060002 220125_UNC32-K00270_0311_AHMNYYBBXY_GAGTGG_S33_L002_R1_001.unaln.bam 239589098 BAM S33_L002_R1 submitted_unaligned CPTAC3 ecc57000-c07b-40ab-a243-1d5ff25138b1 be1245229140832dc24c10509ab75de9 {"aliquot_tag": "ALQ_9905d3c9", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.miRNA-Seq.Tbm.hg38 C3N-00656 AML miRNA-Seq tumor_bone_marrow CPT0438060002 6208a312-cb9c-4c4d-853e-5990f808ea05_mirnaseq_gdc_realn.bam 264555353 BAM harmonized CPTAC3 68c3a49c-fac0-43ec-9e79-2a1ac95d8042 ed6680c0bf8e8614fb6140d8b78d56b5 {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.RNA-Seq.chimeric.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.chimeric.gdc_realn.bam 696275695 BAM chimeric harmonized CPTAC3 3a090740-8c1d-4c79-bbc2-d9189f530a8f 43bf6f60a75fc0448e7e38155bf7840c {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.RNA-Seq.genomic.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.genomic.gdc_realn.bam 7838576260 BAM genomic harmonized CPTAC3 874999a1-5ad0-4460-9587-06eb7a2fad92 831754664955affd12025b11f303b9bd {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.RNA-Seq.S18_L005_R1.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R1_001.fastq.gz 3964756015 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 09c7e727-ce2c-490c-b68c-b07559b752a2 9e006fc8cc6c3e6ea479f0253d0832e4 {"aliquot_tag": "ALQ_9905d3c9", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.RNA-Seq.S18_L005_R2.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R2_001.fastq.gz 4234313784 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 cc595190-cac9-45b0-8b20-c0155c59e122 7d0f0607ca1446facf22bade03365e29 {"aliquot_tag": "ALQ_9905d3c9", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.RNA-Seq.transcriptome.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.transcriptome.gdc_realn.bam 8607142785 BAM transcriptome harmonized CPTAC3 e6c97390-2f06-46e9-b730-622f018ce951 d38ef8afb163bd43cf1abf464a1b18ae {"aliquot_tag": "ALQ_9905d3c9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.WGS.Nbc C3N-00656 AML WGS buccal_normal CPT0435090001 CPT0435090001.WholeGenome.RP-2158.bam 42815516069 BAM submitted_aligned CPTAC3 e45aaa5f-c1d0-43a1-8e91-e3806a3d0fde 961ffd26ea57a8f1e00c5a8dd8a5908e {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00656.WGS.Nbc.hg38 C3N-00656 AML WGS buccal_normal CPT0435090001 908d86b1-40e5-4552-a1d6-f0d745fad499_wgs_gdc_realn.bam 125888783679 BAM harmonized CPTAC3 71add2cb-73d9-4aa3-8025-8fc9a58267b4 e2a7ebe4f25c0aa32ddc6b3d4f1bc678 {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00656.WGS.Tbm C3N-00656 AML WGS tumor_bone_marrow CPT0438050002 CPT0438050002.WholeGenome.RP-2158.bam 48013376646 BAM submitted_aligned CPTAC3 58a2341e-21e3-4c98-b2d5-a865cc3f454c 0a6ee4d8b9a2489c9596f21e279e61ff {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.WGS.Tbm.hg38 C3N-00656 AML WGS tumor_bone_marrow CPT0438050002 4af4dacb-1e3d-4e55-b504-e78b2c17136a_wgs_gdc_realn.bam 143462709432 BAM harmonized CPTAC3 c0204f8e-861d-4005-a7af-9a9f9cac802a e206404f58fb8e2afbaa1aee5d0294ef {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.WXS.Nbc C3N-00656 AML WXS buccal_normal CPT0435090001 CPT0435090001.WholeExome.RP-1303.bam 29878259424 BAM submitted_aligned CPTAC3 8f2dd230-e460-459b-b1a2-349cf170d2e6 d9bf87ddecd5c459e2cd1c969f3a04cf {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00656.WXS.Nbc.hg38 C3N-00656 AML WXS buccal_normal CPT0435090001 908d86b1-40e5-4552-a1d6-f0d745fad499_wxs_gdc_realn.bam 40618481853 BAM harmonized CPTAC3 1233380f-2cb7-4050-a8e5-758c40fba5f1 5b862fff34a18eec52f9cddb8eac6561 {"aliquot_tag": "ALQ_e38b7462", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3N-00656.WXS.Tbm C3N-00656 AML WXS tumor_bone_marrow CPT0438050002 CPT0438050002.WholeExome.RP-1303.bam 25709697241 BAM submitted_aligned CPTAC3 fd4c72d7-ca17-4b75-b7e3-8f72f473bca4 bd9b1362ab3529b910f491484e6614ec {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00656.WXS.Tbm.hg38 C3N-00656 AML WXS tumor_bone_marrow CPT0438050002 4af4dacb-1e3d-4e55-b504-e78b2c17136a_wxs_gdc_realn.bam 89882477241 BAM harmonized CPTAC3 0b33a9ba-d8fa-4b96-8e1c-6f35463ef1eb 5769974e8c594c361268189ee9485178 {"aliquot_tag": "ALQ_dea5a919", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3N-00659.MethArray.Green.Tbm C3N-00659 AML Methylation_Array tumor_bone_marrow CPT0438150002 205987780153_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b33736fa-9d06-4fe7-b2cd-d0656489d9a8 5f5bd75ffb5b39b691efe5f80fdcbdd0 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.MethArray.Red.Tbm C3N-00659 AML Methylation_Array tumor_bone_marrow CPT0438150002 205987780153_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 a4647cb5-1822-47d9-adeb-ed42f86e0a82 2882cbed54d694ac99c17341bec28311 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.miRNA-Seq.S47_L003_R1.Tbm C3N-00659 AML miRNA-Seq tumor_bone_marrow CPT0438160002 220125_UNC32-K00270_0311_AHMNYYBBXY_GGTAGC_S47_L003_R1_001.unaln.bam 210095529 BAM S47_L003_R1 submitted_unaligned CPTAC3 6b68eff0-43d6-4876-9659-750bc632ea27 927f5e6e17ed0e54a7c70a9f6ac1e600 {"aliquot_tag": "ALQ_5259006c", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.miRNA-Seq.Tbm.hg38 C3N-00659 AML miRNA-Seq tumor_bone_marrow CPT0438160002 d35fe2bf-897c-478c-ae53-3dc1dddf433d_mirnaseq_gdc_realn.bam 236181743 BAM harmonized CPTAC3 a6c15b1e-8ede-4f43-bb2d-044e0906e9d8 c738cb546f39fb30ef2aaf56c0029990 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.RNA-Seq.chimeric.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.chimeric.gdc_realn.bam 668640609 BAM chimeric harmonized CPTAC3 ea48ab62-d9c0-437a-ae11-a4aaadb09074 f87de2c7ee10538d1ea19423023e6fb0 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.RNA-Seq.genomic.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.genomic.gdc_realn.bam 7737834452 BAM genomic harmonized CPTAC3 672f2344-8119-40ea-a097-a52904d34e09 22e251422cf1589b4298fd5bda052765 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.RNA-Seq.S19_L005_R1.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R1_001.fastq.gz 3738714987 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 0c8e76d2-3765-43ef-8db4-bd090133aa01 a57afd1d328320effba356a5886a2e96 {"aliquot_tag": "ALQ_5259006c", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.RNA-Seq.S19_L005_R2.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R2_001.fastq.gz 4015190558 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 bab7c676-7656-49e6-ae18-b8d29ce221be a22ceb1c6b4501d6775449ba9cf804fe {"aliquot_tag": "ALQ_5259006c", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.RNA-Seq.transcriptome.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.transcriptome.gdc_realn.bam 8553665678 BAM transcriptome harmonized CPTAC3 02a654a3-f866-4170-8636-fdfcbfb80b26 6dd56ed32eea154201232f262131f7b0 {"aliquot_tag": "ALQ_5259006c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.WGS.Nbc C3N-00659 AML WGS buccal_normal CPT0435120001 CPT0435120001.WholeGenome.RP-2158.bam 54372768330 BAM submitted_aligned CPTAC3 734560bc-c701-4ce8-9473-d4defecea828 d79e52ec1c637e001c9c6ba151d90a1e {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00659.WGS.Nbc.hg38 C3N-00659 AML WGS buccal_normal CPT0435120001 46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wgs_gdc_realn.bam 160385803505 BAM harmonized CPTAC3 46eb5e4a-885c-49c1-a218-4deb4e9d2f08 9df44a99f4a12634d254b6d95b335853 {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00659.WGS.Tbm C3N-00659 AML WGS tumor_bone_marrow CPT0438150002 CPT0438150002.WholeGenome.RP-2158.bam 48310605300 BAM submitted_aligned CPTAC3 9b6326a4-e001-4aee-ad96-4d5215e2a716 540f43b591fa076e78c98b3ed3f3c29c {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.WGS.Tbm.hg38 C3N-00659 AML WGS tumor_bone_marrow CPT0438150002 4045e55e-d312-47ae-a853-1ff6f59e65d3_wgs_gdc_realn.bam 146159152536 BAM harmonized CPTAC3 6fca0608-132e-41e7-8103-0d121e45004d e115d28b36c044292e5b0fdade605559 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.WXS.Nbc C3N-00659 AML WXS buccal_normal CPT0435120001 CPT0435120001.WholeExome.RP-1303.bam 23941692765 BAM submitted_aligned CPTAC3 c710bcd1-9b73-4d75-8028-255f8877ec70 1b58b513de1ab32e1243b23db4f5c554 {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00659.WXS.Nbc.hg38 C3N-00659 AML WXS buccal_normal CPT0435120001 46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wxs_gdc_realn.bam 33227332623 BAM harmonized CPTAC3 9e7a838c-8033-4371-942f-572da8bb1aee bbbec484b4252a92aba1d6c4d3f2fb74 {"aliquot_tag": "ALQ_5f0796d6", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3N-00659.WXS.Tbm C3N-00659 AML WXS tumor_bone_marrow CPT0438150002 CPT0438150002.WholeExome.RP-1303.bam 25184518788 BAM submitted_aligned CPTAC3 3ec22ec4-1c05-4873-987a-d912a6a305ff bc30183b7985570c434365a4a2fd0969 {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00659.WXS.Tbm.hg38 C3N-00659 AML WXS tumor_bone_marrow CPT0438150002 4045e55e-d312-47ae-a853-1ff6f59e65d3_wxs_gdc_realn.bam 35040276552 BAM harmonized CPTAC3 f7aaddb3-f740-4b16-8460-d101844bf612 ac52a5992f70d32ba6cb990a4b90e0db {"aliquot_tag": "ALQ_15f97abc", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3N-00660.MethArray.Green.Tbm C3N-00660 AML Methylation_Array tumor_bone_marrow CPT0383650002 205555390119_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ef3fe73d-28df-4305-9ab8-837a2b4270bb 30717a55c24151966f2f3f82692c0bbe {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.MethArray.Red.Tbm C3N-00660 AML Methylation_Array tumor_bone_marrow CPT0383650002 205555390119_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 ccf6cf73-7065-4baf-a920-67ab8ab3e998 bbb1827571c53642cf151a121a6684f2 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.miRNA-Seq.S22_L005_R1.Tbm C3N-00660 AML miRNA-Seq tumor_bone_marrow CPT0383680002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACTGAT_S22_L005_R1_001.unaln.bam 353218389 BAM S22_L005_R1 submitted_unaligned CPTAC3 8ea51b5f-309c-4fb9-8b3b-17a0692d22b3 d9d62344733e7c511e32989d9a444970 {"aliquot_tag": "ALQ_cb60abd0", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.miRNA-Seq.Tbm.hg38 C3N-00660 AML miRNA-Seq tumor_bone_marrow CPT0383680002 95a8c075-9128-4bde-937a-0ce5225fc0ab_mirnaseq_gdc_realn.bam 368236027 BAM harmonized CPTAC3 364f7cda-a2b8-4c1e-8725-8e401a1280c8 aaa4ecbe76cb4a9d93573f70fd95feb4 {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.RNA-Seq.chimeric.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.chimeric.gdc_realn.bam 294689761 BAM chimeric harmonized CPTAC3 727325f3-15cf-45e6-9a97-13387add4f16 3f212dc27acb8934d5fbe912649d4962 {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.RNA-Seq.genomic.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.genomic.gdc_realn.bam 9414231134 BAM genomic harmonized CPTAC3 92abdc6f-d606-44bf-899e-227f6566181d 878258a74467bb04ee21bef32fa48803 {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.RNA-Seq.S12_L003_R1.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R1_001.fastq.gz 4431111003 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 33eae1fa-1a21-4b09-a234-53c313f73113 029666ab4297b12c57d4f442b5ab9c13 {"aliquot_tag": "ALQ_cb60abd0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.RNA-Seq.S12_L003_R2.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R2_001.fastq.gz 4567963160 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 029b0833-f4d5-4b3f-a5ae-1ffcf2da4470 d4fc84aad7f22b1a9b6e5356bf4c7e2d {"aliquot_tag": "ALQ_cb60abd0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.RNA-Seq.transcriptome.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.transcriptome.gdc_realn.bam 7955946068 BAM transcriptome harmonized CPTAC3 1c1fcca0-c6c1-465a-b5c5-f23e02630cc1 f1172e336ca34db5db76e5e442caeaaa {"aliquot_tag": "ALQ_cb60abd0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.WGS.Nbc C3N-00660 AML WGS buccal_normal CPT0383750002 CPT0383750002.WholeGenome.RP-2158.bam 51684594192 BAM submitted_aligned CPTAC3 68f94f0f-fb2b-4a00-aa34-67cb5f3f72b7 2cb6548a9550f843084553091c334630 {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00660.WGS.Nbc.hg38 C3N-00660 AML WGS buccal_normal CPT0383750002 606201ec-ba28-49e9-b880-7d209c3e763c_wgs_gdc_realn.bam 152580396100 BAM harmonized CPTAC3 6d340b8f-1f8e-4c6a-91b1-dd502378d273 6fe5e2fceab054c6ceb96bc84252b4c7 {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00660.WGS.Tbm C3N-00660 AML WGS tumor_bone_marrow CPT0383650002 CPT0383650002.WholeGenome.RP-2158.bam 64103320954 BAM submitted_aligned CPTAC3 160cac9f-ab43-42fb-8465-44b103863f56 d9867303cf905579d6b1c1df678c983d {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.WGS.Tbm.hg38 C3N-00660 AML WGS tumor_bone_marrow CPT0383650002 7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wgs_gdc_realn.bam 187541869233 BAM harmonized CPTAC3 f6819867-14ed-436d-aaa6-e87e5ffce392 70ebb20475be09476a5cbe960cd39258 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.WXS.Nbc C3N-00660 AML WXS buccal_normal CPT0383750002 CPT0383750002.WholeExome.RP-1303.bam 36751804313 BAM submitted_aligned CPTAC3 7f104952-51f3-4e51-a21b-4a494002d207 12d51f997a4efb9d6702e075a2f3c98d {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00660.WXS.Nbc.hg38 C3N-00660 AML WXS buccal_normal CPT0383750002 606201ec-ba28-49e9-b880-7d209c3e763c_wxs_gdc_realn.bam 50418874518 BAM harmonized CPTAC3 becfee83-3d85-4f28-9613-a0c26a6613d3 16d655d3f838acc349cdc0b9573c81ae {"aliquot_tag": "ALQ_f8acbcc4", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3N-00660.WXS.Tbm C3N-00660 AML WXS tumor_bone_marrow CPT0383650002 CPT0383650002.WholeExome.RP-1303.bam 23808560787 BAM submitted_aligned CPTAC3 954c782f-bb10-40be-a7ac-94f7f32f6852 304cd763f6787c8f85b8308ed941f9f3 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00660.WXS.Tbm.hg38 C3N-00660 AML WXS tumor_bone_marrow CPT0383650002 7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wxs_gdc_realn.bam 32898969714 BAM harmonized CPTAC3 e4b3a652-df94-426e-923f-ef298f0f164e a409d52e47a7217adc491d10817c1b57 {"aliquot_tag": "ALQ_33f06f61", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3N-00661.MethArray.Green.T C3N-00661 GBM Methylation_Array tumor CPT0087570009 202234380062_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f13b13cf-7bf6-42ad-97d1-7d4aa3f83c92 9d4082869ddcf5e27c5cacb24c080a61 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.MethArray.Red.T C3N-00661 GBM Methylation_Array tumor CPT0087570009 202234380062_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 b78c7cc4-0500-44d1-9a19-09aaea5725a6 c357192e1e9df59809abd14c6a2e59fd {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.miRNA-Seq.S41_L008_R1.T C3N-00661 GBM miRNA-Seq tumor CPT0087570006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTGAAA_S41_L008_R1_001.unaln.bam 281999100 BAM S41_L008_R1 submitted_unaligned CPTAC3 f3ca8343-4740-4ff5-99fc-5c65a6f75f9f a0107a940ea6a21006bcb3335c2dfabc {"aliquot_tag": "ALQ_50b9260", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.miRNA-Seq.T.hg38 C3N-00661 GBM miRNA-Seq tumor CPT0087570006 7c121fc0-34ef-46f7-a7e9-88171c245852_mirnaseq_gdc_realn.bam 309676635 BAM harmonized CPTAC3 9d8b70a1-8bc1-4f71-ab05-7993726b40e3 837b3a099b273b7ff4cfb4d6048917ee {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.RNA-Seq.chimeric.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.chimeric.gdc_realn.bam 43149780 BAM chimeric harmonized CPTAC3 c64d4d5f-7478-4d77-bcd7-28b778e97b06 e407a2391523ef2874812a2684d75518 {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.RNA-Seq.genomic.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.genomic.gdc_realn.bam 8450211280 BAM genomic harmonized CPTAC3 23aa68ed-4c4c-458a-b2eb-e4428e012fd2 6ecd0c5933bc4743c18a0f076d043399 {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.RNA-Seq.S1_L001_R1.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4280820344 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 0f21d54f-4e17-4dd1-8e30-aa61b33dfa23 4ea2a23896e903382a3535d636aa51eb {"aliquot_tag": "ALQ_50b9260", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.RNA-Seq.S1_L001_R2.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4715271403 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 cb42cdf1-e194-4a1b-8bc8-64238ecc880b 9d1fecaea92ad9fdee5b945b6e05c302 {"aliquot_tag": "ALQ_50b9260", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.RNA-Seq.transcriptome.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.transcriptome.gdc_realn.bam 10370390473 BAM transcriptome harmonized CPTAC3 2efe305e-8d80-4319-b9bc-c770124626c5 86714628fc93c15c51073e0759450602 {"aliquot_tag": "ALQ_50b9260", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.WGS.N C3N-00661 GBM WGS blood_normal CPT0087650002 CPT0087650002.WholeGenome.RP-1303.bam 61808855431 BAM submitted_aligned CPTAC3 29a5aa8b-57bf-45d6-ba8a-f780e31af35d 3c94ce6c99dc21fb3ad75ea548fb5708 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00661.WGS.N.hg38 C3N-00661 GBM WGS blood_normal CPT0087650002 e997aa99-cb00-4512-ba9d-89c014720977_wgs_gdc_realn.bam 91546572846 BAM harmonized CPTAC3 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f 8e88cf3cda0860ff833819c6bc4f09a1 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00661.WGS.T C3N-00661 GBM WGS tumor CPT0087570009 CPT0087570009.WholeGenome.RP-1303.bam 66764756872 BAM submitted_aligned CPTAC3 dee44719-4644-4e07-abe3-c2c4a2328696 96f2457bedb8a5de6bf867978e64f9d1 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.WGS.T.hg38 C3N-00661 GBM WGS tumor CPT0087570009 3bce098d-2249-4ea7-8832-b1a436035810_wgs_gdc_realn.bam 98029268406 BAM harmonized CPTAC3 2fed7e32-d8c9-46cf-8ace-368ede492a80 3645fa73b5d41f4f0ab47b73998b4b53 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.WXS.N C3N-00661 GBM WXS blood_normal CPT0087650002 CPT0087650002.WholeExome.RP-1303.bam 40035642416 BAM submitted_aligned CPTAC3 c1d9d4bb-d5e6-40d9-bd29-315747bfa0a3 f6398f5ee25f7b7e5392b78169f81e15 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00661.WXS.N.hg38 C3N-00661 GBM WXS blood_normal CPT0087650002 e997aa99-cb00-4512-ba9d-89c014720977_wxs_gdc_realn.bam 55210045551 BAM harmonized CPTAC3 7a8cfc68-f8a4-4c6e-9acc-5f9f385f068b 769946461299ee2f517d3bc5cf6b5a67 {"aliquot_tag": "ALQ_fe3277b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00661.WXS.T C3N-00661 GBM WXS tumor CPT0087570009 CPT0087570009.WholeExome.RP-1303.bam 33966809743 BAM submitted_aligned CPTAC3 2bf53bfc-b3a0-4a39-ac8f-97f38f3ef39e 7324ab41297bc97a6a88b616ccbc5656 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00661.WXS.T.hg38 C3N-00661 GBM WXS tumor CPT0087570009 3bce098d-2249-4ea7-8832-b1a436035810_wxs_gdc_realn.bam 46075322257 BAM harmonized CPTAC3 d480b264-6b7b-4924-9d02-ee385b0b7c39 fc10333e3414c836ffc106cee3d477c2 {"aliquot_tag": "ALQ_95b48ff1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.MethArray.Green.T C3N-00662 GBM Methylation_Array tumor CPT0087680009 202234370086_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8d0ee2e0-05d5-44b0-bd72-7207de10b9e7 e6f2d103965c31fb689d5d62244d65e7 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.MethArray.Red.T C3N-00662 GBM Methylation_Array tumor CPT0087680009 202234370086_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 dc44ddb8-e508-4720-8d67-c4155833f906 642a9ca317150150b922c4f11ea58c69 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.miRNA-Seq.S42_L008_R1.T C3N-00662 GBM miRNA-Seq tumor CPT0087680006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTGGCC_S42_L008_R1_001.unaln.bam 253670716 BAM S42_L008_R1 submitted_unaligned CPTAC3 397a556b-3625-4de4-b375-864bfb1be85d 032e39be3be271229667c2304dbc7fc3 {"aliquot_tag": "ALQ_1cf771f", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.miRNA-Seq.T.hg38 C3N-00662 GBM miRNA-Seq tumor CPT0087680006 3fe0d587-e4a1-4505-9dac-8fd9ae352890_mirnaseq_gdc_realn.bam 278459674 BAM harmonized CPTAC3 9578dc48-9289-462b-9b3c-f575cd9dd29a 545ecf0e3dfe4b27c8f9d0a861401256 {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.RNA-Seq.chimeric.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.chimeric.gdc_realn.bam 38667659 BAM chimeric harmonized CPTAC3 25589ecb-2f6b-4f89-8ae7-0a09d85d33d3 6cdd7243895258850cbb788932a47e24 {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.RNA-Seq.genomic.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.genomic.gdc_realn.bam 8277945856 BAM genomic harmonized CPTAC3 5b2c602c-6906-4f7e-9ef7-7035569ca4f0 6b3a040f95e0d9efbd222d4f3483a6e3 {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.RNA-Seq.S4_L001_R1.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3857129343 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 fe0a5bd8-4326-43e3-83ec-db254421bb70 72a0582504c4b4a7203f71cac406767d {"aliquot_tag": "ALQ_1cf771f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.RNA-Seq.S4_L001_R2.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4284638564 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 661d6dae-cc63-4161-81eb-b7347bf223d0 525d9717d49c0ecd8be50a9d1c57b9bd {"aliquot_tag": "ALQ_1cf771f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.RNA-Seq.transcriptome.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.transcriptome.gdc_realn.bam 8621409650 BAM transcriptome harmonized CPTAC3 4a6211f9-2ec9-4949-bcd1-812a98b6c101 15b149444f87b5c70759156358312fdf {"aliquot_tag": "ALQ_1cf771f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.scRNA-Seq.S1_L004_R1.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R1_001.fastq.gz 14835795110 FASTQ S1_L004_R1 submitted_unaligned CPTAC3 8d389c12-7022-49ad-96a0-d8e8f7d4f007 842d7192228a7b47e48a9f164990f1d3 {"aliquot_tag": "ALQ_f6da2772", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.scRNA-Seq.S1_L004_R2.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R2_001.fastq.gz 33781848129 FASTQ S1_L004_R2 submitted_unaligned CPTAC3 eec795f2-2324-4530-b7eb-eb67e5184af7 d270ef2770cea5dab7f5a401234edbbb {"aliquot_tag": "ALQ_f6da2772", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.scRNA-Seq.T.hg38 C3N-00662 GBM scRNA-Seq tumor CPT0087680014 possorted_genome_bam.bam 33941762690 BAM harmonized CPTAC3 a12a483a-71a6-490c-b175-3373997ab5d5 d705a4fddaf3904e90b7aaee6704a1ef {"aliquot_tag": "ALQ_f6da2772", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.WGS.N C3N-00662 GBM WGS blood_normal CPT0087720002 CPT0087720002.WholeGenome.RP-1303.bam 58036535017 BAM submitted_aligned CPTAC3 83b1d3cf-b33a-4011-88e5-41f602fc0922 b3aaa706402126ee8ec0fd5f3ead7c14 {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00662.WGS.N.hg38 C3N-00662 GBM WGS blood_normal CPT0087720002 8c165614-a7de-4661-b701-726d28c8ac3a_wgs_gdc_realn.bam 84160516593 BAM harmonized CPTAC3 dd1e269b-54b0-4731-a58e-dd1c5f87c097 3e2b6cf7e7ce60afd3977188a18adce2 {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00662.WGS.T C3N-00662 GBM WGS tumor CPT0087680009 CPT0087680009.WholeGenome.RP-1303.bam 68144530031 BAM submitted_aligned CPTAC3 199a7bf3-052f-40d6-992e-80bebd989097 6d8cbec5d74081859a0f666d1732ac77 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.WGS.T.hg38 C3N-00662 GBM WGS tumor CPT0087680009 8ef2e973-1a92-476d-b73a-10a37332e9d7_wgs_gdc_realn.bam 100057036877 BAM harmonized CPTAC3 071aca22-1581-46de-b6d5-7b64afeb0d85 e8a656fb1ac03d7f7da30e63606b7c2d {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.WXS.N C3N-00662 GBM WXS blood_normal CPT0087720002 CPT0087720002.WholeExome.RP-1303.bam 26184955817 BAM submitted_aligned CPTAC3 fa384ceb-b4f7-4186-8356-b20a2c65629c 059cc2417addb60f2e5e974ebc0ee73b {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00662.WXS.N.hg38 C3N-00662 GBM WXS blood_normal CPT0087720002 8c165614-a7de-4661-b701-726d28c8ac3a_wxs_gdc_realn.bam 35886053042 BAM harmonized CPTAC3 e0c40321-c1a9-4308-a056-2950db2d4923 04ce9b41c7f0b371b6ec659cf929c248 {"aliquot_tag": "ALQ_874e7802", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00662.WXS.T C3N-00662 GBM WXS tumor CPT0087680009 CPT0087680009.WholeExome.RP-1303.bam 33349723248 BAM submitted_aligned CPTAC3 da42d8ec-b586-4aa9-ad85-8bd7a6e88627 02e1c05e418c790d6a348d0e88fc277b {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00662.WXS.T.hg38 C3N-00662 GBM WXS tumor CPT0087680009 8ef2e973-1a92-476d-b73a-10a37332e9d7_wxs_gdc_realn.bam 45016762866 BAM harmonized CPTAC3 f1765cfa-f5ee-4887-a538-9604dd4d7a9b 367acc6e711b333bca9aba120d733a67 {"aliquot_tag": "ALQ_91706a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.MethArray.Green.T C3N-00663 GBM Methylation_Array tumor CPT0087730009 202234380061_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 56b09a64-c242-422d-8f37-f3ba240ad38f 57a3300e71c37ce680cbb3190d9273cd {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.MethArray.Red.T C3N-00663 GBM Methylation_Array tumor CPT0087730009 202234380061_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 5087c974-a7f4-44c9-be1e-da7cceef3762 07b891c665e1444481a70c879c93e93b {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.miRNA-Seq.S43_L008_R1.T C3N-00663 GBM miRNA-Seq tumor CPT0087730006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTTTCG_S43_L008_R1_001.unaln.bam 233876272 BAM S43_L008_R1 submitted_unaligned CPTAC3 acbeeb0e-f510-4776-a7b5-115dff07e63a 795dec93e877621b03d4e93db299dc0f {"aliquot_tag": "ALQ_bd4395ab", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.miRNA-Seq.T.hg38 C3N-00663 GBM miRNA-Seq tumor CPT0087730006 5d973dc8-faae-4610-ae1b-007a481589ff_mirnaseq_gdc_realn.bam 260543384 BAM harmonized CPTAC3 24690bde-f455-47ba-abb5-efd664230d0e 659e9f2e9fe9b6c6bd079b9f9551ea0b {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.RNA-Seq.chimeric.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.chimeric.gdc_realn.bam 54122757 BAM chimeric harmonized CPTAC3 d47414fd-5760-4d10-8460-632b3a27d012 c79266a0c465e7fefe6c21c17cf69696 {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.RNA-Seq.genomic.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.genomic.gdc_realn.bam 9726747201 BAM genomic harmonized CPTAC3 1429f293-08ee-4638-a88e-1c349421bed0 1bb01b39ff659f67f36d93d3370ae602 {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.RNA-Seq.S20_L008_R1.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R1_001.fastq.gz 4133457611 FASTQ S20_L008_R1 submitted_unaligned CPTAC3 a81c70bb-e641-4704-9927-70d093da191b 9bebd453218c504d9f4a5e9a1dfe829f {"aliquot_tag": "ALQ_bd4395ab", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.RNA-Seq.S20_L008_R2.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R2_001.fastq.gz 4624075046 FASTQ S20_L008_R2 submitted_unaligned CPTAC3 88fd4df9-3f7e-43df-8e34-e5a2f62d60a9 143d9d41d8006388ec21818503b74a0f {"aliquot_tag": "ALQ_bd4395ab", "sample": "S20", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.RNA-Seq.transcriptome.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.transcriptome.gdc_realn.bam 8555784894 BAM transcriptome harmonized CPTAC3 bad45859-f935-47bf-b41e-4a359b3dd730 59425f3844aa888eff9341b8b4273d20 {"aliquot_tag": "ALQ_bd4395ab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.WGS.N C3N-00663 GBM WGS blood_normal CPT0087810002 CPT0087810002.WholeGenome.RP-1303.bam 78686804838 BAM submitted_aligned CPTAC3 1f2be79d-4860-47bb-b2b9-4f8259146a54 32897919dae92c4a4806d3c7ed167795 {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00663.WGS.N.hg38 C3N-00663 GBM WGS blood_normal CPT0087810002 a1aa3a23-f590-48d2-b559-2340afcb3e6c_wgs_gdc_realn.bam 115995719987 BAM harmonized CPTAC3 d6582bf3-3f98-46b1-a149-7997f5009bda 7c921fce47246bcdb890c068ed5ed247 {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00663.WGS.T C3N-00663 GBM WGS tumor CPT0087730009 CPT0087730009.WholeGenome.RP-1303.bam 61829567029 BAM submitted_aligned CPTAC3 a87c0259-852a-488c-981a-1f3b5f1b0845 4f6d58303a959cc4381c973558e38c06 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.WGS.T.hg38 C3N-00663 GBM WGS tumor CPT0087730009 cd98c349-930d-4cd6-a2db-5bb1a7f4951b_wgs_gdc_realn.bam 91452960453 BAM harmonized CPTAC3 65c5d898-e316-4071-87cd-f1341762fd48 da46fce17adee72cff5b19f4507e8390 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.WXS.N C3N-00663 GBM WXS blood_normal CPT0087810002 CPT0087810002.WholeExome.RP-1303.bam 43233180120 BAM submitted_aligned CPTAC3 a24a0411-72bf-42bb-a1d1-5c9eb58beee9 06cbf96a926c27bdb42c19e6b3e65025 {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00663.WXS.N.hg38 C3N-00663 GBM WXS blood_normal CPT0087810002 a1aa3a23-f590-48d2-b559-2340afcb3e6c_wxs_gdc_realn.bam 57449122610 BAM harmonized CPTAC3 aeec4ab0-c3bf-4a88-af43-61cac87354c9 69b6c41251957eff1185e4bf14d1a12c {"aliquot_tag": "ALQ_31b8b007", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00663.WXS.T C3N-00663 GBM WXS tumor CPT0087730009 CPT0087730009.WholeExome.RP-1303.bam 32454101537 BAM submitted_aligned CPTAC3 920252da-957b-4e94-b282-a63fc773ef5b 771a576e67687d20a3cf01ee42f28db6 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00663.WXS.T.hg38 C3N-00663 GBM WXS tumor CPT0087730009 cd98c349-930d-4cd6-a2db-5bb1a7f4951b_wxs_gdc_realn.bam 44878213962 BAM harmonized CPTAC3 a358088e-5d69-40d2-add9-87260dd0680a d0b3242451c09e8525a6cc7e052afcf8 {"aliquot_tag": "ALQ_2dfc883a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.MethArray.Green.T C3N-00665 GBM Methylation_Array tumor CPT0093360009 202234380099_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 855982e3-5856-4a29-bc70-28f8dbbc7bb3 cd343a7040b511eae16fde9c76c35444 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.MethArray.Red.T C3N-00665 GBM Methylation_Array tumor CPT0093360009 202234380099_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 770d53c5-7f67-4778-9a2f-65676dde5ba1 e7bc00e999eef6a37bd680af4cc68513 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.miRNA-Seq.S26_L005_R1.T C3N-00665 GBM miRNA-Seq tumor CPT0093360006 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L005_R1_001.unaln.bam 171628201 BAM S26_L005_R1 submitted_unaligned CPTAC3 acbfaea1-6f7f-4670-96af-17a40af2355c 0536858b8545e97e419685f68742c349 {"aliquot_tag": "ALQ_d6d77c40", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.miRNA-Seq.T.hg38 C3N-00665 GBM miRNA-Seq tumor CPT0093360006 5feaef2c-c9b3-4e37-bc6c-57cb31f3c6a8_mirnaseq_gdc_realn.bam 196385122 BAM harmonized CPTAC3 436fc58e-1bbe-4f2e-a185-029cb69dca61 83a11d3faeafb31700486cfdd0877e14 {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.RNA-Seq.chimeric.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.chimeric.gdc_realn.bam 34969459 BAM chimeric harmonized CPTAC3 53ade679-26ca-41fb-8feb-fa92396cd370 62c42137888402cc752b7f768457348c {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.RNA-Seq.genomic.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.genomic.gdc_realn.bam 10595931691 BAM genomic harmonized CPTAC3 7de2535a-4141-4268-9545-0a93d5ce22e2 02436627fe884f8b272d57d9df2d9967 {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.RNA-Seq.S13_L004_R1.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R1_001.fastq.gz 4574550613 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 949887f9-0e80-4e58-a463-e2f4eca6f344 accdf37184c922e952d51ba00ce528fc {"aliquot_tag": "ALQ_d6d77c40", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.RNA-Seq.S13_L004_R2.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R2_001.fastq.gz 4836725837 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 3cdd04b9-24fd-4cd0-adda-92fff85b4f2e 3b8118bc60d1db3d06d148c3dd7ec5e6 {"aliquot_tag": "ALQ_d6d77c40", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.RNA-Seq.transcriptome.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.transcriptome.gdc_realn.bam 12088535916 BAM transcriptome harmonized CPTAC3 7ae2eff9-dd97-4efe-8da2-35a95803e935 a741c0596f99243c6008e33ad53d159c {"aliquot_tag": "ALQ_d6d77c40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.WGS.N C3N-00665 GBM WGS blood_normal CPT0093440002 CPT0093440002.WholeGenome.RP-1303.bam 67576983440 BAM submitted_aligned CPTAC3 3f8c7efb-9174-46e4-b8b9-0586934226bb ecef8f9aeeb27be537bbaa939999c00a {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00665.WGS.N.hg38 C3N-00665 GBM WGS blood_normal CPT0093440002 847e2c7e-5327-4064-a364-9e8c65bfd949_wgs_gdc_realn.bam 99580079735 BAM harmonized CPTAC3 394b7faf-cc03-4e59-a36c-01fbfba7449c fded398664740033653f225da54adc13 {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00665.WGS.T C3N-00665 GBM WGS tumor CPT0093360009 CPT0093360009.WholeGenome.RP-1303.bam 67337583453 BAM submitted_aligned CPTAC3 69ceb9c4-4258-4cd9-951e-a96bc888884d e708d8e8ce170af32afc8cdc5d30f79b {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.WGS.T.hg38 C3N-00665 GBM WGS tumor CPT0093360009 f2365384-0941-41c2-8356-e5cb86183369_wgs_gdc_realn.bam 97209041208 BAM harmonized CPTAC3 aabf00cc-4646-4c76-ba85-e71a9918937b c72215857ca220d9ee6b29c11c3dc351 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.WXS.N C3N-00665 GBM WXS blood_normal CPT0093440002 CPT0093440002.WholeExome.RP-1303.bam 32202336964 BAM submitted_aligned CPTAC3 b3233ebf-f9d2-419a-a562-63500f31290f 3d109a901f662ca069fd7fee9400039c {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00665.WXS.N.hg38 C3N-00665 GBM WXS blood_normal CPT0093440002 847e2c7e-5327-4064-a364-9e8c65bfd949_wxs_gdc_realn.bam 44750312807 BAM harmonized CPTAC3 d7c0f0a4-302e-4d90-be01-3bd6592dd132 6083d7e9651b192c6a466fdfe2f936d5 {"aliquot_tag": "ALQ_b67fdb81", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00665.WXS.T C3N-00665 GBM WXS tumor CPT0093360009 CPT0093360009.WholeExome.RP-1303.bam 57914023552 BAM submitted_aligned CPTAC3 8b4a3812-3b88-48ba-b208-c16036cdc7e4 ef92b92543ef5cf5f011e96410ea97a0 {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00665.WXS.T.hg38 C3N-00665 GBM WXS tumor CPT0093360009 f2365384-0941-41c2-8356-e5cb86183369_wxs_gdc_realn.bam 79664464021 BAM harmonized CPTAC3 6cf5e1b4-e354-4404-b3e5-663bda86bbfb 080c8ff60098c93e44d89bc01d529c9f {"aliquot_tag": "ALQ_466861d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00681.MethArray.Green.Tbm C3N-00681 AML Methylation_Array tumor_bone_marrow CPT0383790001 205555380130_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 116cb0d6-b2ce-4e1f-8e56-954cc004ac53 90c72d69e8c7ae5f2016779815c5ac5d {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.MethArray.Red.Tbm C3N-00681 AML Methylation_Array tumor_bone_marrow CPT0383790001 205555380130_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 737bed73-8d50-45f2-8308-bbf5017f80ef b35e0860d139c83227731986204d150f {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.miRNA-Seq.S23_L005_R1.Tbm C3N-00681 AML miRNA-Seq tumor_bone_marrow CPT0383810002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATGAGC_S23_L005_R1_001.unaln.bam 230052033 BAM S23_L005_R1 submitted_unaligned CPTAC3 969e1d94-fb36-4df2-a6a9-55a8a7775518 079a94598ebf4d36986138779a57d8bd {"aliquot_tag": "ALQ_fc7aa8d1", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.miRNA-Seq.Tbm.hg38 C3N-00681 AML miRNA-Seq tumor_bone_marrow CPT0383810002 f7ccaf7a-4231-4a14-b1bb-d8eccaf220b9_mirnaseq_gdc_realn.bam 239831324 BAM harmonized CPTAC3 8ffbb8bb-b495-4ad2-a3eb-0e994a31e940 7c04217931da2e794a8d1924959d7be3 {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.RNA-Seq.chimeric.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.chimeric.gdc_realn.bam 263954949 BAM chimeric harmonized CPTAC3 0afb14bf-9dbd-411f-ba86-97ae19e84700 c6a4234504000f1857c26e681c79c5cb {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.RNA-Seq.genomic.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.genomic.gdc_realn.bam 7909952623 BAM genomic harmonized CPTAC3 55743065-aaf8-445c-9756-99d9edb0569c fe06eaa9635ec77e2f7cfe6aa4d037ee {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.RNA-Seq.S8_L002_R1.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R1_001.fastq.gz 3898985323 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 182da2bf-ecc4-4df0-b857-d68da45b9a93 a3ba3b543d03119e329da6393163fc5f {"aliquot_tag": "ALQ_fc7aa8d1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.RNA-Seq.S8_L002_R2.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R2_001.fastq.gz 4170046982 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 670183c6-3c04-4e18-b129-3d104c270b33 916616b6eaf934a288e352c451896fc8 {"aliquot_tag": "ALQ_fc7aa8d1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.RNA-Seq.transcriptome.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.transcriptome.gdc_realn.bam 9985828702 BAM transcriptome harmonized CPTAC3 31c870b1-d1b4-4eaa-8a4a-6c4b48ddb203 90ea678e248935c3a7f6672192dffd09 {"aliquot_tag": "ALQ_fc7aa8d1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.WGS.Nbc C3N-00681 AML WGS buccal_normal CPT0383890001 CPT0383890001.WholeGenome.RP-2158.bam 52604640458 BAM submitted_aligned CPTAC3 b438557f-92dd-4ce1-a64b-47f33473e220 7bcbe2cbe3f4f288c20518cfd150d874 {"aliquot_tag": "ALQ_5503b2aa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00681.WGS.Nbc.hg38 C3N-00681 AML WGS buccal_normal CPT0383890001 68519ab6-2a6e-4cb7-a3de-f648c394dc8d_wgs_gdc_realn.bam 151881801324 BAM harmonized CPTAC3 fe2d050d-a92a-42e6-925c-669ac5a858c2 520890609a11bf3fc0d4616aae48dbf5 {"aliquot_tag": "ALQ_5503b2aa", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00681.WGS.Tbm C3N-00681 AML WGS tumor_bone_marrow CPT0383790001 CPT0383790001.WholeGenome.RP-2158.bam 45531231345 BAM submitted_aligned CPTAC3 91a7e208-2372-4a5a-84f1-e6b99a6e9da1 d5c884268773ae91af1909a0e80135f0 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.WGS.Tbm.hg38 C3N-00681 AML WGS tumor_bone_marrow CPT0383790001 fadba10a-fe2a-41d8-bab8-4b7ba0e0f6bb_wgs_gdc_realn.bam 126787393204 BAM harmonized CPTAC3 364841e8-4076-4d6b-be96-5a384877d20e a9a8826e38a4ee46ea089aebafefd414 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.WXS.Tbm C3N-00681 AML WXS tumor_bone_marrow CPT0383790001 CPT0383790001.WholeExome.RP-1303.bam 24526942160 BAM submitted_aligned CPTAC3 80404b8c-46c8-409a-9f6c-340672d5cf8b a8ac652a6a1a931ef03a51c486a60033 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00681.WXS.Tbm.hg38 C3N-00681 AML WXS tumor_bone_marrow CPT0383790001 fadba10a-fe2a-41d8-bab8-4b7ba0e0f6bb_wxs_gdc_realn.bam 33867668273 BAM harmonized CPTAC3 8884afb3-86fa-4627-84f6-8ed7a62fdf5a c3734e5341471f85ecd4c282830df282 {"aliquot_tag": "ALQ_a455007f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3N-00682.MethArray.Green.Tbm C3N-00682 AML Methylation_Array tumor_bone_marrow CPT0383920001 205555390164_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2ecf1006-16b6-4641-b03b-62a471be4d7d ad2ecedc43e8b15bd7c6f6f24f3d6a0e {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.MethArray.Red.Tbm C3N-00682 AML Methylation_Array tumor_bone_marrow CPT0383920001 205555390164_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 31f361a4-a019-43a6-b791-72db9f5e6a96 da6f33abc0add124772f2e13eecc5355 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.miRNA-Seq.S1_L001_R1.Tbm C3N-00682 AML miRNA-Seq tumor_bone_marrow CPT0383930002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACAGTG_S1_L001_R1_001.unaln.bam 219604258 BAM S1_L001_R1 submitted_unaligned CPTAC3 a79ad700-b3b5-4787-a458-3ce0d63f49af a18ed19531635caa786a8159c848abb3 {"aliquot_tag": "ALQ_4de62814", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.miRNA-Seq.Tbm.hg38 C3N-00682 AML miRNA-Seq tumor_bone_marrow CPT0383930002 137c87c4-85c3-4779-ae1c-817d9d47eedb_mirnaseq_gdc_realn.bam 239904287 BAM harmonized CPTAC3 39895c6e-b8aa-444f-9f9a-243af04f2c94 dc2795a31000e242154f6c6c1b88e617 {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.RNA-Seq.chimeric.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.chimeric.gdc_realn.bam 51892053 BAM chimeric harmonized CPTAC3 a558b8cb-94b9-40a2-a818-229a49158090 acfb28091b213531f5c6f0e66c22ba8f {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.RNA-Seq.genomic.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.genomic.gdc_realn.bam 7678401356 BAM genomic harmonized CPTAC3 40986da5-0fd4-4bad-9204-b4639aa2db4d c962c2b7587ea666970f5738e6f1b5b3 {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.RNA-Seq.S26_L007_R1.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R1_001.fastq.gz 3637742988 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 1e35d895-00c6-4c67-8a9a-5b05c85265d4 5d8e3181a6b9010deb98d7c5ff325f1b {"aliquot_tag": "ALQ_4de62814", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3N-00682.RNA-Seq.S26_L007_R2.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R2_001.fastq.gz 3818796095 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 92ed38f9-f775-446c-805f-b4ebcd834900 0dd02f218c7655c3ae880d0889c2564f {"aliquot_tag": "ALQ_4de62814", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} +C3N-00682.RNA-Seq.transcriptome.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.transcriptome.gdc_realn.bam 7570517637 BAM transcriptome harmonized CPTAC3 931fb10a-73ac-453c-9716-1e5c64992239 6da5cfe99c8cfef49bf3b1a595c44e1f {"aliquot_tag": "ALQ_4de62814", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.WGS.Nbc C3N-00682 AML WGS buccal_normal CPT0384020001 CPT0384020001.WholeGenome.RP-2158.bam 56666429156 BAM submitted_aligned CPTAC3 29957d5c-082a-4b56-9738-a2dfcaa04728 519c92992fefd297dea742eb895a0c7e {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00682.WGS.Nbc.hg38 C3N-00682 AML WGS buccal_normal CPT0384020001 390d7f76-3d6f-46d1-8a88-402cb7923b53_wgs_gdc_realn.bam 165008409037 BAM harmonized CPTAC3 5c144d70-5a22-494a-95d5-184d07361a2d 77e7bb1e8a435c3b75de19b324665012 {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00682.WGS.Tbm C3N-00682 AML WGS tumor_bone_marrow CPT0383920001 CPT0383920001.WholeGenome.RP-2158.bam 55644554662 BAM submitted_aligned CPTAC3 8f109b2f-2044-417a-a2dc-f0cb8d6dbe97 be083b8e84c01a532010a102e3a766c4 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.WGS.Tbm.hg38 C3N-00682 AML WGS tumor_bone_marrow CPT0383920001 cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wgs_gdc_realn.bam 156069378155 BAM harmonized CPTAC3 a9f6a226-2277-4b18-8c66-49821f0b9fc6 3ef527172af746a08ceb4f84fe5170a2 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.WXS.Nbc C3N-00682 AML WXS buccal_normal CPT0384020001 CPT0384020001.WholeExome.RP-1303.bam 24995833086 BAM submitted_aligned CPTAC3 81bed2b3-3305-4d5d-9ed0-c45be1bed834 c5d4e1d0dd6334e3a3962b53efb9d3c3 {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00682.WXS.Nbc.hg38 C3N-00682 AML WXS buccal_normal CPT0384020001 390d7f76-3d6f-46d1-8a88-402cb7923b53_wxs_gdc_realn.bam 35173294973 BAM harmonized CPTAC3 ae1a9ec4-e7db-4467-bea4-d30d74abe706 0cd9d5ff9ac186017e05c99e15b3374f {"aliquot_tag": "ALQ_b273f58", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3N-00682.WXS.Tbm C3N-00682 AML WXS tumor_bone_marrow CPT0383920001 CPT0383920001.WholeExome.RP-1303.bam 20157860147 BAM submitted_aligned CPTAC3 e130f1a4-bc02-4c9a-a601-734594b297e8 b26c3f497199d5ad17666571edebc1f6 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00682.WXS.Tbm.hg38 C3N-00682 AML WXS tumor_bone_marrow CPT0383920001 cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wxs_gdc_realn.bam 28246981343 BAM harmonized CPTAC3 35900896-b8ed-41d0-a4b8-7c4c08293966 75039f766dbed274b7f31c7690d8b727 {"aliquot_tag": "ALQ_e98f501e", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3N-00689.MethArray.Green.Tbm C3N-00689 AML Methylation_Array tumor_bone_marrow CPT0438250002 205987780094_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 05a22419-8932-431b-954c-8c689dc3a834 095767f6bddad145bc37996e65d9d65e {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.MethArray.Red.Tbm C3N-00689 AML Methylation_Array tumor_bone_marrow CPT0438250002 205987780094_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 1d73e2aa-ddbd-4c26-a113-df02171b9231 a3eb7e6b2ea3671bcebeca745dfbc399 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.miRNA-Seq.S42_L003_R1.Tbm C3N-00689 AML miRNA-Seq tumor_bone_marrow CPT0438260002 220125_UNC32-K00270_0311_AHMNYYBBXY_ACTGAT_S42_L003_R1_001.unaln.bam 304601294 BAM S42_L003_R1 submitted_unaligned CPTAC3 29862aaa-a254-4ba9-9c53-658f5b91310b 7c8c22db5a01db2504ba885248930f7c {"aliquot_tag": "ALQ_d4cd72c2", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.miRNA-Seq.Tbm.hg38 C3N-00689 AML miRNA-Seq tumor_bone_marrow CPT0438260002 a37aaa6f-debb-4b78-82f2-6d1d573edb2f_mirnaseq_gdc_realn.bam 335794153 BAM harmonized CPTAC3 c8dafe6f-9d1d-47f3-b0f8-a6687f879c8e 5beb3cf9882df2359565e0abb6c82285 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.RNA-Seq.chimeric.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.chimeric.gdc_realn.bam 657599802 BAM chimeric harmonized CPTAC3 e3952f8f-f46a-43d3-80db-c67da6e34b6f 1cea6de061e97ab79b4bb96c30f40148 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.RNA-Seq.genomic.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.genomic.gdc_realn.bam 7015130554 BAM genomic harmonized CPTAC3 5dbabb6e-0ee6-4c70-9778-64eef18053df 0bfcb1917b1450889ae370c8ed360350 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.RNA-Seq.S17_L005_R1.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3452486555 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 a9fdc56b-5cdc-4b59-a7b3-037603f468e0 018ad349d0bf60db65da51840aaccf86 {"aliquot_tag": "ALQ_d4cd72c2", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.RNA-Seq.S17_L005_R2.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 3683983306 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 739a1b27-ff73-43fe-aa21-b3005b66eb2a 36d42e58c4c002c43a0e59e1e0f05876 {"aliquot_tag": "ALQ_d4cd72c2", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.RNA-Seq.transcriptome.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.transcriptome.gdc_realn.bam 7776794318 BAM transcriptome harmonized CPTAC3 faccae86-e63a-4e6d-a01f-b73db3ba96a6 be4353e71d19aed4305dc214a6bfe537 {"aliquot_tag": "ALQ_d4cd72c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.WGS.Nbc C3N-00689 AML WGS buccal_normal CPT0435150001 CPT0435150001.WholeGenome.RP-2158.bam 46776921036 BAM submitted_aligned CPTAC3 968bbd86-c780-4595-a775-c8285c21cb79 7f1254ac0b243d3278208620b0356036 {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00689.WGS.Nbc.hg38 C3N-00689 AML WGS buccal_normal CPT0435150001 3e005f75-512b-468f-8f30-ca4283ae0e13_wgs_gdc_realn.bam 138205153404 BAM harmonized CPTAC3 878e413b-ef66-45a3-98c4-bc1c3dbf53cc eb4c949ccd62d8e37a21f90bb335f716 {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00689.WGS.Tbm C3N-00689 AML WGS tumor_bone_marrow CPT0438250002 CPT0438250002.WholeGenome.RP-2158.bam 49118752290 BAM submitted_aligned CPTAC3 6dfed537-9932-46dc-8355-3b1f99e6888f d99d72ec138e20354f4845062bc33387 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.WGS.Tbm.hg38 C3N-00689 AML WGS tumor_bone_marrow CPT0438250002 800a32d7-4f29-47af-8903-0cc0f3986c20_wgs_gdc_realn.bam 145848709846 BAM harmonized CPTAC3 d67370bf-7944-4bb2-91a5-ada579ec1bdd ba96137d65256eaf75b79e47ebadedf8 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.WXS.Nbc C3N-00689 AML WXS buccal_normal CPT0435150001 CPT0435150001.WholeExome.RP-1303.bam 30488196099 BAM submitted_aligned CPTAC3 2c97939c-7a4b-4418-95a0-a7ebf4bcc91b 036486c893ab53c66452d8be990b793e {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3N-00689.WXS.Nbc.hg38 C3N-00689 AML WXS buccal_normal CPT0435150001 3e005f75-512b-468f-8f30-ca4283ae0e13_wxs_gdc_realn.bam 41415472428 BAM harmonized CPTAC3 04ff8cce-e24b-4214-b284-4556cd134563 eb29c607b5696a76f79595d77ae94b03 {"aliquot_tag": "ALQ_ed274ac6", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3N-00689.WXS.Tbm C3N-00689 AML WXS tumor_bone_marrow CPT0438250002 CPT0438250002.WholeExome.RP-1303.bam 23697314874 BAM submitted_aligned CPTAC3 a1cce6b2-69a2-4eba-a610-7f59b42871a5 60b3cf312b55d3aad2c5718160609fdf {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3N-00689.WXS.Tbm.hg38 C3N-00689 AML WXS tumor_bone_marrow CPT0438250002 800a32d7-4f29-47af-8903-0cc0f3986c20_wxs_gdc_realn.bam 32612454502 BAM harmonized CPTAC3 66fd07ec-bae8-440b-9f6d-5604342a87b2 aaf1f19b38a91220fa9c48ab09da1e88 {"aliquot_tag": "ALQ_936d0812", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3N-00704.MethArray.Green.T C3N-00704 LUAD Methylation_Array tumor CPT0055100010 202178770100_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0f140af5-499e-460f-a4ad-d175749f611b ed97abd8bee666a2a7cf02b5a3c4a4b1 {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.MethArray.Red.T C3N-00704 LUAD Methylation_Array tumor CPT0055100010 202178770100_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 0998b752-5a40-4c98-b761-76a3be029adf 3044d38a9640c6f33f2460262b0b69cf {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.miRNA-Seq.A.hg38 C3N-00704 LUAD miRNA-Seq tissue_normal CPT0062810006 e80dba5f-7e80-4ecd-811e-070978819989_mirnaseq_gdc_realn.bam 294151685 BAM harmonized CPTAC3 4e0d542d-77f3-4227-a89d-2906534b376e 057f76247205bd0d683bae5acabddc56 {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00704.miRNA-Seq.S25_L008_R1.A C3N-00704 LUAD miRNA-Seq tissue_normal CPT0062810006 181108_UNC31-K00269_0162_AH255GBBXY_ATCACG_S25_L008_R1_001.unaln.bam 270678937 BAM S25_L008_R1 submitted_unaligned CPTAC3 c6a5e772-e18c-4da9-91ae-945a6d5630e9 54fd80f14ada5fd74140aeba19040c8d {"aliquot_tag": "ALQ_7167498b", "sample": "S25", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00704.miRNA-Seq.S27_L007_R1.T C3N-00704 LUAD miRNA-Seq tumor CPT0055100014 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L007_R1_001.unaln.bam 254691766 BAM S27_L007_R1 submitted_unaligned CPTAC3 dfa77552-5bc7-4177-b744-727337745ec4 a087a47f6d6b714014b1e84f1dc68abf {"aliquot_tag": "ALQ_d73558f3", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.miRNA-Seq.T.hg38 C3N-00704 LUAD miRNA-Seq tumor CPT0055100014 e2d60703-5988-4131-9b7f-8934bc0d074b_mirnaseq_gdc_realn.bam 278558223 BAM harmonized CPTAC3 07fae150-4f75-4823-9663-5d1971ec07c5 d7aed7177d31043cfe2983a8a92f96e0 {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.RNA-Seq.chimeric.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.chimeric.gdc_realn.bam 65312364 BAM chimeric harmonized CPTAC3 960e594c-64e3-4440-901f-b7461e17b19f 6bd2c55c5143571b1bec81c378c68a4d {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00704.RNA-Seq.chimeric.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.chimeric.gdc_realn.bam 187944043 BAM chimeric harmonized CPTAC3 d83945e2-031a-4f3f-b0e5-deccd47770c2 8773f12fd5b592dad71812378e58354e {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.RNA-Seq.genomic.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.genomic.gdc_realn.bam 8165383094 BAM genomic harmonized CPTAC3 a9e7a8e8-8595-494c-8a6f-41dafb0a7064 bf0d2ff6779d5c4f7826dfb67b8bbf08 {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00704.RNA-Seq.genomic.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.genomic.gdc_realn.bam 7048376666 BAM genomic harmonized CPTAC3 444119f1-e698-45f7-a706-1b3250f82d09 44b61f1554c9df132e5efa56afe5cfeb {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.RNA-Seq.S10_L003_R1.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R1_001.fastq.gz 3868831519 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 84daa27c-2280-4bc2-b098-3ebe90dc4985 f3cd8e131403c7bbe33ba45313be2526 {"aliquot_tag": "ALQ_7167498b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00704.RNA-Seq.S10_L003_R2.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R2_001.fastq.gz 3700937499 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 8d8a3157-9d5b-4941-9d37-a4c2856b1bfd 7213bd19d363112ecc5858ca38a7004d {"aliquot_tag": "ALQ_7167498b", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00704.RNA-Seq.S17_L005_R1.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R1_001.fastq.gz 3615965972 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 a5373c83-5859-4af0-9cc8-d3362f26794b a2fbbea5d08fe67fe757ad329fe7b3f3 {"aliquot_tag": "ALQ_d73558f3", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.RNA-Seq.S17_L005_R2.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R2_001.fastq.gz 3966919848 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 739f05f6-8611-4727-9603-118166c1ad30 599d9b830453cc83fa377913224a371d {"aliquot_tag": "ALQ_d73558f3", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.RNA-Seq.transcriptome.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.transcriptome.gdc_realn.bam 9340486991 BAM transcriptome harmonized CPTAC3 90027eca-c4c5-40a1-b4cf-119760dde5ec 9eb3eac255425d3cbea669059db682cd {"aliquot_tag": "ALQ_7167498b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00704.RNA-Seq.transcriptome.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.transcriptome.gdc_realn.bam 9688332235 BAM transcriptome harmonized CPTAC3 8bb561e0-4e4b-4aea-b8db-94bb0f1ac23d fd6b7683d1837ee88f4a0f5fea95b1bd {"aliquot_tag": "ALQ_d73558f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.WGS.N C3N-00704 LUAD WGS blood_normal CPT0062910002 CPT0062910002.WholeGenome.RP-1303.bam 72481397542 BAM submitted_aligned CPTAC3 52bb15e1-f2c0-4f67-a359-009e9942b34c 09325c87b5d24a51784d9133427226af {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00704.WGS.N.hg38 C3N-00704 LUAD WGS blood_normal CPT0062910002 577f7079-4da4-43ea-9534-77fa24c616ec_gdc_realn.bam 112962603484 BAM harmonized CPTAC3 e2d7bb33-913f-4649-818d-ea17dec28c73 b60bdc9cbc4ed4593327b824d461a63d {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00704.WGS.T C3N-00704 LUAD WGS tumor CPT0055100010 CPT0055100010.WholeGenome.RP-1303.bam 78742048063 BAM submitted_aligned CPTAC3 bbb376d9-eba7-4a72-80ff-746d9495db20 fe9eae4203b2961744fe0ae839fdd782 {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.WGS.T.hg38 C3N-00704 LUAD WGS tumor CPT0055100010 518bf809-26b7-44df-8594-e9d18ed203b8_gdc_realn.bam 117895174497 BAM harmonized CPTAC3 96826950-6ed1-4823-9139-a25ac9973c6b 6e9aa3b347b447642e61ec5e143c60fc {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.WXS.N C3N-00704 LUAD WXS blood_normal CPT0062910002 CPT0062910002.WholeExome.RP-1303.bam 38030776314 BAM submitted_aligned CPTAC3 e6a2f338-334f-42ef-bc1f-2bf6eb31eab4 f103810fecf2b19bf4a3040a400a9176 {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00704.WXS.N.hg38 C3N-00704 LUAD WXS blood_normal CPT0062910002 577f7079-4da4-43ea-9534-77fa24c616ec_gdc_realn.bam 51455180690 BAM harmonized CPTAC3 bec30983-31ae-4a8d-9c04-f784734a7778 0ebbacbaf7790d0e9d8de7d55aee1275 {"aliquot_tag": "ALQ_bd565e37", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00704.WXS.T C3N-00704 LUAD WXS tumor CPT0055100010 CPT0055100010.WholeExome.RP-1303.bam 31151458435 BAM submitted_aligned CPTAC3 f6c64aac-a888-479f-9991-f419c7671854 0bc1c3dbe65b66949513263bca5f2d3b {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00704.WXS.T.hg38 C3N-00704 LUAD WXS tumor CPT0055100010 518bf809-26b7-44df-8594-e9d18ed203b8_gdc_realn.bam 42478616390 BAM harmonized CPTAC3 af19c433-8960-40a3-b375-c7c7d4300868 f905be1fba084a25828a30d19bd1b510 {"aliquot_tag": "ALQ_d0589cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.MethArray.Green.T C3N-00709 PDA Methylation_Array tumor CPT0203850007 203273630048_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 22de5739-70ee-4c83-a707-3c6e48655762 44ef055c5c6f651c4ab431ed1376163b {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.MethArray.Red.T C3N-00709 PDA Methylation_Array tumor CPT0203850007 203273630048_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 c1309361-ff17-40df-9d2c-807dc4d1632d 6a5255ae872991496e865878b9aec2fa {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.miRNA-Seq.S27_L005_R1.T C3N-00709 PDA miRNA-Seq tumor CPT0203850010 190712_UNC32-K00270_0192_BH7HL3BBXY_TGACCA_S27_L005_R1_001.unaln.bam 150926385 BAM S27_L005_R1 submitted_unaligned CPTAC3 f6fa144b-bcb9-4962-8ae9-02531a7c3cbb 4d193e8326a07b86c3aa82c54615707e {"aliquot_tag": "ALQ_3a71518a", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.miRNA-Seq.T.hg38 C3N-00709 PDA miRNA-Seq tumor CPT0203850010 cd9afa58-a602-44f1-8bf9-462a17f8f0fd_mirnaseq_gdc_realn.bam 167139008 BAM harmonized CPTAC3 71edf6d8-e671-4c63-9edf-eda188e39b9c 3d551818757789c554d21efdd3061b70 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.RNA-Seq.chimeric.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.chimeric.gdc_realn.bam 37275220 BAM chimeric harmonized CPTAC3 fb76ae6a-3ea2-4cf7-80b0-74ba63299038 6d360f5e0619abc6734430ef52f44627 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.RNA-Seq.genomic.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.genomic.gdc_realn.bam 8853054213 BAM genomic harmonized CPTAC3 a0092ac9-bf74-4e30-9821-504d5d4ea3fb 3962484d1a82e1f9d92aa27200b21c33 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.RNA-Seq.S29_L008_R1.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R1_001.fastq.gz 3992326363 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 5533af10-acc9-4398-b820-c8b135255a5b 8a85be56b9855828c5b74ee2ed670784 {"aliquot_tag": "ALQ_3a71518a", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.RNA-Seq.S29_L008_R2.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R2_001.fastq.gz 4192854035 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 eba68b0b-e839-4a33-b3bc-c00412f3fe80 d8919fbc8f094222c2b7eb9ef6e7b7d6 {"aliquot_tag": "ALQ_3a71518a", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.RNA-Seq.transcriptome.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.transcriptome.gdc_realn.bam 8793450187 BAM transcriptome harmonized CPTAC3 bffbc6d8-ef77-4c54-a872-808fc52e25ca 67588c01a4029b988de55ca338ff5367 {"aliquot_tag": "ALQ_3a71518a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.WGS.N C3N-00709 PDA WGS blood_normal CPT0203890002 CPT0203890002.WholeGenome.RP-1303.bam 59448793303 BAM submitted_aligned CPTAC3 9c1818c0-eafb-4c5c-b2c9-c8e3aa94fc86 f83fd1944bea82452ce8c860e18090b2 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00709.WGS.N.hg38 C3N-00709 PDA WGS blood_normal CPT0203890002 63f3b721-9c0d-4e06-99d0-d5dd1df27ba4_wgs_gdc_realn.bam 85927451284 BAM harmonized CPTAC3 d9d988fc-80c7-4eb3-894f-4696dcf881de f667361efd2fc04d17871cbc2f2cd150 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00709.WGS.T C3N-00709 PDA WGS tumor CPT0203850007 CPT0203850007.WholeGenome.RP-1303.bam 122889468279 BAM submitted_aligned CPTAC3 aaf14097-526d-401a-8a74-59559f5c4e2c f3b63f389ad8b8269f17a7fc2baee62b {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.WGS.T.hg38 C3N-00709 PDA WGS tumor CPT0203850007 1ec93982-f625-4548-b72b-95fbe68a23fa_wgs_gdc_realn.bam 185247508376 BAM harmonized CPTAC3 06095f68-a4bf-4c25-be51-b634a545179f 26f7b405d3c9c3f5f46f3caa5902ea5b {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.WXS.N C3N-00709 PDA WXS blood_normal CPT0203890002 CPT0203890002.WholeExome.RP-1303.bam 26875245988 BAM submitted_aligned CPTAC3 a7e66a5b-4aaf-4185-a68f-d3f02bb0278b db0662ee27c0abb552de931e94ec82d0 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00709.WXS.N.hg38 C3N-00709 PDA WXS blood_normal CPT0203890002 63f3b721-9c0d-4e06-99d0-d5dd1df27ba4_wxs_gdc_realn.bam 36813847743 BAM harmonized CPTAC3 f9e6a620-8f7b-4795-bcca-af44701a13a3 2a51a40ab48e8133f973e5c7a1a9b617 {"aliquot_tag": "ALQ_894ece6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00709.WXS.T C3N-00709 PDA WXS tumor CPT0203850007 CPT0203850007.WholeExome.RP-1303.bam 41631944704 BAM submitted_aligned CPTAC3 ac298134-fd99-491c-b1b4-a36c1bb3c612 49b53702fa153eac76b203c1c58d4824 {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00709.WXS.T.hg38 C3N-00709 PDA WXS tumor CPT0203850007 1ec93982-f625-4548-b72b-95fbe68a23fa_wxs_gdc_realn.bam 57810034381 BAM harmonized CPTAC3 af16acc1-09e1-4074-ab86-220d9eaaf098 c77aa8ecc48a17f063a79434f1f5abbe {"aliquot_tag": "ALQ_bd0ef568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.MethArray.Green.A C3N-00715 CCRCC Methylation_Array tissue_normal CPT0203940006 204930630107_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cc071272-915c-446c-a5fb-dfc9a93c6a44 8bb48aa0d0ed17fb9bc6bb90520ed7b4 {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.MethArray.Green.T C3N-00715 CCRCC Methylation_Array tumor CPT0203930006 203219670106_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 436287eb-0e22-4ed1-abc8-65eeb727898e 7b844aa6d890292b8a578fdb712d47bb {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.MethArray.Red.A C3N-00715 CCRCC Methylation_Array tissue_normal CPT0203940006 204930630107_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 996449e6-1e34-4bf5-b780-8f59aff9a97e 43d141639e642e15433a091d00592c78 {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.MethArray.Red.T C3N-00715 CCRCC Methylation_Array tumor CPT0203930006 203219670106_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 d90c900c-8827-4451-80b8-9cb79c9d59ce 42c33ede9c7e58a8018d9461e969e026 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.miRNA-Seq.A.hg38 C3N-00715 CCRCC miRNA-Seq tissue_normal CPT0203940009 3d4e7a1b-b0a9-4bbc-802a-f007a38872b4_mirnaseq_gdc_realn.bam 212306453 BAM harmonized CPTAC3 75630e79-767b-4a25-b49b-7d09d29877bc 79860befb4f400dbcfdefe71fc281c8d {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.miRNA-Seq.S18_L008_R1.T C3N-00715 CCRCC miRNA-Seq tumor CPT0203930009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L008_R1_001.unaln.bam 196644461 BAM S18_L008_R1 submitted_unaligned CPTAC3 53aaa613-55c7-4bba-84ed-16911ccabb9f 56fe1a2b453fb86efd6272ceb83775ff {"aliquot_tag": "ALQ_1eaafe6a", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.miRNA-Seq.S8_L002_R1.A C3N-00715 CCRCC miRNA-Seq tissue_normal CPT0203940009 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTTGA_S8_L002_R1_001.unaln.bam 197244732 BAM S8_L002_R1 submitted_unaligned CPTAC3 3783d254-c8b6-4145-87c1-48837dd69a62 fe8bbf6463a66199e80d2e1da2271556 {"aliquot_tag": "ALQ_ac8a227a", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.miRNA-Seq.T.hg38 C3N-00715 CCRCC miRNA-Seq tumor CPT0203930009 76eaea9b-99c9-4b62-8202-09e91ae51304_mirnaseq_gdc_realn.bam 212744699 BAM harmonized CPTAC3 b7e7d943-d712-4d6a-9bb0-6153b7ad15e7 7eb6876d914f3c8409862e23fbd1bc9a {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.RNA-Seq.chimeric.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.chimeric.gdc_realn.bam 34761469 BAM chimeric harmonized CPTAC3 06d883ec-dc74-41d2-8be3-197f7c8ecf65 21b26faf1b28e8714fa4718e35f4eec2 {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.RNA-Seq.chimeric.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.chimeric.gdc_realn.bam 392509198 BAM chimeric harmonized CPTAC3 2fd02f99-a172-44ff-9f2b-b783d8ba9dbe 5c5190ec4619405b3e4b1fc82bfa68a0 {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.RNA-Seq.genomic.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.genomic.gdc_realn.bam 9549757673 BAM genomic harmonized CPTAC3 36fef037-4f51-4433-b949-74955c94f8a2 eb7b29e303dc4d437c61fcbb30b48e90 {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.RNA-Seq.genomic.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.genomic.gdc_realn.bam 8708429886 BAM genomic harmonized CPTAC3 37d600b7-4d20-4396-8fe6-b7759655022f 20689d5b8e3612bec0f94c0032ee4d52 {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.RNA-Seq.S10_L003_R1.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R1_001.fastq.gz 3837113526 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 13cbc902-21f0-43aa-97c5-7c5ce1817d51 ad1b56dd59eb5a7eb4d4bc28ed879e3f {"aliquot_tag": "ALQ_1eaafe6a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.RNA-Seq.S10_L003_R2.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R2_001.fastq.gz 4326772146 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 80f776fd-c686-4428-aa33-809d3d3ebae2 735b92e5d6dac155e4430c440129332e {"aliquot_tag": "ALQ_1eaafe6a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.RNA-Seq.S4_L001_R1.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 3826716047 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 458cc937-d7c6-4c8e-ba37-30fd0ed42c3d 26fbc0540f8b6d8187fddec0d411f69e {"aliquot_tag": "ALQ_ac8a227a", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.RNA-Seq.S4_L001_R2.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4197904251 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 3ae71ad4-a3f1-4bea-91d0-fc3afdf7ec87 658732f559e901617e1ba9c1b8ce1e3f {"aliquot_tag": "ALQ_ac8a227a", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.RNA-Seq.transcriptome.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.transcriptome.gdc_realn.bam 10085290443 BAM transcriptome harmonized CPTAC3 92a842b4-51a5-4f0a-8f46-b6797bff17da d1143379230f43c946951719d5743ab1 {"aliquot_tag": "ALQ_ac8a227a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.RNA-Seq.transcriptome.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.transcriptome.gdc_realn.bam 10759312886 BAM transcriptome harmonized CPTAC3 79aeee4e-361a-4c53-87f9-cc24a10fba9e 89f9d7a21720e0a00fee66a610592f4f {"aliquot_tag": "ALQ_1eaafe6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.WGS.N C3N-00715 CCRCC WGS blood_normal CPT0203970002 CPT0203970002.WholeGenome.RP-1303.bam 59006730336 BAM submitted_aligned CPTAC3 75abcf27-9ffa-4c09-b859-ef263dbe4831 08d780b606bf04aa5a8195058be190e0 {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00715.WGS.N.hg38 C3N-00715 CCRCC WGS blood_normal CPT0203970002 ab1402df-40d6-4ae0-a989-f3e28a544fda_wgs_gdc_realn.bam 85549865401 BAM harmonized CPTAC3 670e1eac-c39f-45a3-9e4f-4cdd42af654c 1fcf96ae7b0af2ac20ad79e0825030d0 {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00715.WGS.T C3N-00715 CCRCC WGS tumor CPT0203930006 CPT0203930006.WholeGenome.RP-1303.bam 66141459656 BAM submitted_aligned CPTAC3 07658abd-12b9-4ece-a072-d5855a7a9d37 c7f5ee376afeaefdace66413b2465691 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.WGS.T.hg38 C3N-00715 CCRCC WGS tumor CPT0203930006 2236af7e-cf6e-4b12-b961-d9e294109659_wgs_gdc_realn.bam 99189288456 BAM harmonized CPTAC3 e56a537d-8fee-4342-aba1-b60586ef8b06 8a1e2630a6f5d074eac0a7578cabc666 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.WXS.A C3N-00715 CCRCC WXS tissue_normal CPT0203940006 CPT0203940006.WholeExome.RP-1303.bam 19311800074 BAM submitted_aligned CPTAC3 d693b78e-de95-4ed2-a98d-f6ca8e42c6b0 b4852836b7993c46692a10806935423a {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.WXS.A.hg38 C3N-00715 CCRCC WXS tissue_normal CPT0203940006 4649674d-3275-4ec9-87e4-b5ac2c3ee61a_wxs_gdc_realn.bam 26487471748 BAM harmonized CPTAC3 43ffe70b-5489-4d84-b5dc-85ee8672c773 a81e44b0dc800d06634d53e287ed3127 {"aliquot_tag": "ALQ_3c353feb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00715.WXS.N C3N-00715 CCRCC WXS blood_normal CPT0203970002 CPT0203970002.WholeExome.RP-1303.bam 26947997007 BAM submitted_aligned CPTAC3 8a169add-4c76-4c31-9b3a-4f4ab319ed43 48a7d5c5c331130c426ede4caa348e2a {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00715.WXS.N.hg38 C3N-00715 CCRCC WXS blood_normal CPT0203970002 ab1402df-40d6-4ae0-a989-f3e28a544fda_wxs_gdc_realn.bam 37488817173 BAM harmonized CPTAC3 1d58753d-f0e6-40b5-800a-9a7785388948 bc3cab41f3aaa3d091a6ab2141e64dfb {"aliquot_tag": "ALQ_7cf88122", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00715.WXS.T C3N-00715 CCRCC WXS tumor CPT0203930006 CPT0203930006.WholeExome.RP-1303.bam 22623748702 BAM submitted_aligned CPTAC3 e8a754cf-cd6e-4070-b075-c6ff9111bb5e 1c9ebf9e46bb9c2812c80fdbf6c02771 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00715.WXS.T.hg38 C3N-00715 CCRCC WXS tumor CPT0203930006 2236af7e-cf6e-4b12-b961-d9e294109659_wxs_gdc_realn.bam 31437692755 BAM harmonized CPTAC3 3b03f465-8703-41b3-b84d-f5730e612803 91e1c1ff5094c008266071ede1fc8376 {"aliquot_tag": "ALQ_8e15e3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.MethArray.Green.A C3N-00721 CCRCC Methylation_Array tissue_normal CPT0204020006 204930640122_R03C01_Grn.idat 13677965 IDAT Green NA CPTAC3 f9aadbe3-9941-483a-afd9-d2713213eb82 8033e3203c7ce07e76cca11d02278c7b {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.MethArray.Green.T C3N-00721 CCRCC Methylation_Array tumor CPT0204010006 203219640160_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1059fb2d-caa2-4cfe-8189-5bc378f783b5 bdf3f9cb36c7f6d937fda94d6bdcc958 {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.MethArray.Red.A C3N-00721 CCRCC Methylation_Array tissue_normal CPT0204020006 204930640122_R03C01_Red.idat 13677965 IDAT Red NA CPTAC3 4ef0abad-09f9-4f04-b495-f3080aef769d e1e9fc12b1bd17b0747ef61050aaec62 {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.MethArray.Red.T C3N-00721 CCRCC Methylation_Array tumor CPT0204010006 203219640160_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 370e04cb-d20a-4bd3-a5ee-0af580e6140d b8f2044206d232d3c6b60fb818e4eba3 {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.miRNA-Seq.A.hg38 C3N-00721 CCRCC miRNA-Seq tissue_normal CPT0204020009 f461c27a-df1e-4fb3-82aa-d35ef7ad5a77_mirnaseq_gdc_realn.bam 167597510 BAM harmonized CPTAC3 bd277164-5bb0-4506-9a99-465460415f3b 425d7aca99631c52b03122831f4934ba {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.miRNA-Seq.S19_L008_R1.T C3N-00721 CCRCC miRNA-Seq tumor CPT0204010009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L008_R1_001.unaln.bam 188803861 BAM S19_L008_R1 submitted_unaligned CPTAC3 c8f7670a-382b-48c4-805c-aec13c2bde06 19fcb61444fe8bcc1bed6e81ae9ebf24 {"aliquot_tag": "ALQ_86c2c24c", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.miRNA-Seq.S9_L006_R1.A C3N-00721 CCRCC miRNA-Seq tissue_normal CPT0204020009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L006_R1_001.unaln.bam 149521294 BAM S9_L006_R1 submitted_unaligned CPTAC3 926accfb-a6b2-4c27-b4fb-82e97c6ae0d5 01be3be2df84a31925d8a97d07034dbb {"aliquot_tag": "ALQ_c162b89c", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.miRNA-Seq.T.hg38 C3N-00721 CCRCC miRNA-Seq tumor CPT0204010009 2e8da10b-f4d8-494e-a276-4df9ef1eb44e_mirnaseq_gdc_realn.bam 206636498 BAM harmonized CPTAC3 d41ab74d-7e47-4eff-80ac-e983c58db827 85a0d46fc8fcf9322ca205beca5aa884 {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.RNA-Seq.chimeric.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.chimeric.gdc_realn.bam 38939071 BAM chimeric harmonized CPTAC3 2ef7177e-a575-4167-84a4-e87a8ed04583 895142135616b429c6e43826ff006e17 {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.RNA-Seq.chimeric.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.chimeric.gdc_realn.bam 333594160 BAM chimeric harmonized CPTAC3 aa47b7a6-da44-4187-b678-fa152d267aa2 799cc656e361883a7f68b61edb332bb3 {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.RNA-Seq.genomic.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.genomic.gdc_realn.bam 10199883379 BAM genomic harmonized CPTAC3 647ec72d-1c9c-44cf-81b9-c0f9cf2271e0 1c974c2f88cef46d49acd466f91dd102 {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.RNA-Seq.genomic.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.genomic.gdc_realn.bam 8080212493 BAM genomic harmonized CPTAC3 189d6983-a26a-4b26-a362-a590c1d9f24e 1b279c81a22ea72a5be2fe539dc145fa {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.RNA-Seq.S15_L004_R1.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R1_001.fastq.gz 3577737714 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 04a32000-08f5-4a3d-be0b-5c35170913d8 b3a025d7973cddc557a51219936fe4d1 {"aliquot_tag": "ALQ_86c2c24c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.RNA-Seq.S15_L004_R2.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R2_001.fastq.gz 3727955624 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 d157f2bc-5118-4f5f-88be-63b7bd141c17 016feac227dddb528ae7e4f34098d200 {"aliquot_tag": "ALQ_86c2c24c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.RNA-Seq.S5_L008_R1.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R1_001.fastq.gz 4178594326 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 798d8ffc-7f64-44c5-8b14-34622e04bc92 2460955d5752b133f2cf29b55ce49c9e {"aliquot_tag": "ALQ_c162b89c", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.RNA-Seq.S5_L008_R2.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4635484464 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 73fccaee-44e1-4bff-a961-0c71756e5bd7 0576027e5a7c1acbcb47bc784bf0475b {"aliquot_tag": "ALQ_c162b89c", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.RNA-Seq.transcriptome.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.transcriptome.gdc_realn.bam 10506344340 BAM transcriptome harmonized CPTAC3 ede7f877-f2da-429f-a478-ea9d0fdacf2f 243e5f449174e70f651474ec42ce96e0 {"aliquot_tag": "ALQ_c162b89c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.RNA-Seq.transcriptome.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.transcriptome.gdc_realn.bam 9480434391 BAM transcriptome harmonized CPTAC3 6618939b-cf79-43dd-abd9-43abbef452d0 e58cf23eae97cdf2ff9ec00b0abcab59 {"aliquot_tag": "ALQ_86c2c24c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.WGS.N C3N-00721 CCRCC WGS blood_normal CPT0204210002 CPT0204210002.WholeGenome.RP-1303.bam 56305995625 BAM submitted_aligned CPTAC3 5b2dc83c-ecd8-4bd9-b86b-4685038d38c1 39dcf9f2730d1909622ab92dca645dfb {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00721.WGS.N.hg38 C3N-00721 CCRCC WGS blood_normal CPT0204210002 2064ed3d-fa0f-4f20-b282-8e3d96df5bc2_wgs_gdc_realn.bam 82396003839 BAM harmonized CPTAC3 32ab13dd-f90f-438b-b2f9-2d61a17446cd 674f3992ba2219bc00e420281be54365 {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00721.WGS.T C3N-00721 CCRCC WGS tumor CPT0204010006 CPT0204010006.WholeGenome.RP-1303.bam 61236877107 BAM submitted_aligned CPTAC3 4e998d9f-c4d9-4760-85f8-4ed374b2ee8e dfa98fa8a374a54d11b566223fef8ea2 {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.WGS.T.hg38 C3N-00721 CCRCC WGS tumor CPT0204010006 541ebd77-f1d2-4dd9-a538-8179f6ddfd62_wgs_gdc_realn.bam 89989540162 BAM harmonized CPTAC3 aa9f054d-09a2-456e-ac91-c8ab25cda4f3 1fe73c4128d1440ccc1e713bba82885b {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.WXS.A C3N-00721 CCRCC WXS tissue_normal CPT0204020006 CPT0204020006.WholeExome.RP-1303.bam 25347158382 BAM submitted_aligned CPTAC3 65eee49e-07d4-4010-9fb7-0b429ddc00ad 963c08fbbaaa8360bf87a464196da480 {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.WXS.A.hg38 C3N-00721 CCRCC WXS tissue_normal CPT0204020006 d43eff2f-4376-4496-96d2-7bb79a7dfc4a_wxs_gdc_realn.bam 34927498538 BAM harmonized CPTAC3 e78f500e-29ed-4928-97ed-58c4a567f2fd 254961c2aacebed6ba56bb3ba02681c0 {"aliquot_tag": "ALQ_51dda50d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00721.WXS.N C3N-00721 CCRCC WXS blood_normal CPT0204210002 CPT0204210002.WholeExome.RP-1303.bam 28313153077 BAM submitted_aligned CPTAC3 4f2b766c-d05c-4a3f-a12b-73dc03a5a4b8 e202000ba37d50a6a6ab3c5b2a08df71 {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00721.WXS.N.hg38 C3N-00721 CCRCC WXS blood_normal CPT0204210002 2064ed3d-fa0f-4f20-b282-8e3d96df5bc2_wxs_gdc_realn.bam 38800065481 BAM harmonized CPTAC3 7b1a6958-9898-4239-8ccd-78b19dfad847 af4915a1f788942b3ddbe754f235090f {"aliquot_tag": "ALQ_5cd8bacf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00721.WXS.T C3N-00721 CCRCC WXS tumor CPT0204010006 CPT0204010006.WholeExome.RP-1303.bam 25936753980 BAM submitted_aligned CPTAC3 23c5cbac-7bc5-4394-9efd-4c36ff8e4181 c9549e7b4a1b74404f303ab23bcbd4ce {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00721.WXS.T.hg38 C3N-00721 CCRCC WXS tumor CPT0204010006 541ebd77-f1d2-4dd9-a538-8179f6ddfd62_wxs_gdc_realn.bam 35498764065 BAM harmonized CPTAC3 101908b3-3502-42df-9eab-2303fb8fde49 62dd264e17768a4256fa8ab1313d70ba {"aliquot_tag": "ALQ_167ddfdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.MethArray.Green.T C3N-00729 UCEC Methylation_Array tumor CPT0064930010 202178770109_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 18bcfd75-18e7-4ae4-88b8-c4e4007f224c 7fddf9ddc79c0e716a92f99086a2322a {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.MethArray.Red.T C3N-00729 UCEC Methylation_Array tumor CPT0064930010 202178770109_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 c9ea8353-5f69-4bad-8403-a7f2cd5a335f 840cc4d0a3a784fb25284bf51a0f173a {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.miRNA-Seq.S1_L006_R1.T C3N-00729 UCEC miRNA-Seq tumor CPT0064930007 190228_UNC32-K00270_0151_AHYLY3BBXX_ATCACG_S1_L006_R1_001.unaln.bam 221778468 BAM S1_L006_R1 submitted_unaligned CPTAC3 adf5b52a-4946-4dd1-84df-723481420e94 d7d3cb6e17eb4f9246d17f7f317b1fe9 {"aliquot_tag": "ALQ_d42ccce2", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.miRNA-Seq.T.hg38 C3N-00729 UCEC miRNA-Seq tumor CPT0064930007 29d73a91-f661-43ff-b813-c3c3188204db_mirnaseq_gdc_realn.bam 250258265 BAM harmonized CPTAC3 74a41f5b-f378-4942-b4e3-df12e00d85c4 0c0e6360f15b60549f84565890674431 {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.chimeric.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.chimeric.gdc_realn.bam 69796302 BAM chimeric harmonized CPTAC3 fbca5666-de71-4f49-b633-5bd1e2807213 4cd54236b0b8f29ad192ac58b612b13f {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.chimeric.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.chimeric.gdc_realn.bam 38236007 BAM chimeric harmonized CPTAC3 51fd3224-31cc-4cce-8425-b7577b8b3526 4989269cf30d8f4f9e3856f34778faee {"aliquot_tag": "ALQ_4a9f58c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.genomic.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.genomic.gdc_realn.bam 7909644802 BAM genomic harmonized CPTAC3 25a0e5d6-91b6-4933-a407-6a36220782a7 8f6643750dc42caaf5a33a1391438c17 {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.genomic.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.genomic.gdc_realn.bam 4311798212 BAM genomic harmonized CPTAC3 8260a676-96c8-4aa7-9d36-1c06fdcc7ba5 5c72a77aee67385f500e12f237bbbbee {"aliquot_tag": "ALQ_4a9f58c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.S15_R1.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R1_001.fastq.gz 2272624657 FASTQ S15_R1 submitted_unaligned CPTAC3 19052f4d-fcab-405b-8ea4-b794722efc26 9670531e1da808c13421d5d3e4f5b92e {"aliquot_tag": "ALQ_4a9f58c6", "sample": "S15", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.S15_R2.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R2_001.fastq.gz 2364386036 FASTQ S15_R2 submitted_unaligned CPTAC3 4ea3edf7-e40c-48a8-859c-072a2db0bf48 6903fba68b239be07b8f85916fc256c5 {"aliquot_tag": "ALQ_4a9f58c6", "sample": "S15", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.S20_L006_R1.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R1_001.fastq.gz 3812942895 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 2c0420b6-8299-46ed-8971-deab6b23eabf d3916ef2a840dff3ce78341c15f99612 {"aliquot_tag": "ALQ_d42ccce2", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.S20_L006_R2.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R2_001.fastq.gz 3940654655 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 f783684d-96e1-46be-a19e-686d53adf650 d943e09915050bd8c2b22361a424fad0 {"aliquot_tag": "ALQ_d42ccce2", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.transcriptome.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.transcriptome.gdc_realn.bam 11157577936 BAM transcriptome harmonized CPTAC3 4f3fc47b-080b-46fa-8f1b-c1e4a22b4b71 c60f56c98a8399103a66efd013d93d54 {"aliquot_tag": "ALQ_d42ccce2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.RNA-Seq.transcriptome.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.transcriptome.gdc_realn.bam 2427502564 BAM transcriptome harmonized CPTAC3 5c139d62-3020-4ade-8ec2-363060b37a6c 2aca15c677db91253d523e978181e890 {"aliquot_tag": "ALQ_4a9f58c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.WGS.N C3N-00729 UCEC WGS blood_normal CPT0070650002 CPT0070650002.WholeGenome.RP-1303.bam 70747202192 BAM submitted_aligned CPTAC3 b8ed770b-47a0-4845-80af-5ebe79665e31 047e69447716d4645ff6f0a34defa39e {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00729.WGS.N.hg38 C3N-00729 UCEC WGS blood_normal CPT0070650002 4c0795d8-5700-45d5-ac34-de5f2660a99d_gdc_realn.bam 107283875180 BAM harmonized CPTAC3 bc11cdc1-7b13-4d28-b9c4-6ad617ca75f7 def58da2f2f5520f9bf6bb357c019dee {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00729.WGS.T C3N-00729 UCEC WGS tumor CPT0064930010 CPT0064930010.WholeGenome.RP-1303.bam 69469227121 BAM submitted_aligned CPTAC3 4649d6f1-b5cb-482a-8790-72ed04fd2276 d82612b6bab948ac3b3fbb39c70bb2f2 {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.WGS.T.hg38 C3N-00729 UCEC WGS tumor CPT0064930010 2fbd49f6-4c1b-4bb8-a92c-27ac702d593f_gdc_realn.bam 103947209491 BAM harmonized CPTAC3 e3322e24-bb2a-494d-b11f-619c992a284d 648813984f1b5feb24e45dc9ba5a5bfc {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.WXS.N C3N-00729 UCEC WXS blood_normal CPT0070650002 CPT0070650002.WholeExome.RP-1303.bam 38956653324 BAM submitted_aligned CPTAC3 2f910f19-f0a4-43b5-aa6f-e257abda54ca ee6b5f9fd5871f53a71ce9b3e38340a0 {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00729.WXS.N.hg38 C3N-00729 UCEC WXS blood_normal CPT0070650002 4c0795d8-5700-45d5-ac34-de5f2660a99d_gdc_realn.bam 53140480210 BAM harmonized CPTAC3 2706ff8e-1101-4969-a2e3-d2bdfe201e66 ddb0f77575b80b306240bda5801464cf {"aliquot_tag": "ALQ_e2b55b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00729.WXS.T C3N-00729 UCEC WXS tumor CPT0064930010 CPT0064930010.WholeExome.RP-1303.bam 32086302894 BAM submitted_aligned CPTAC3 b52bc4e8-6556-42fb-b355-3a3a7ed55e45 f415335690bb9c7d908138e9627bab05 {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00729.WXS.T.hg38 C3N-00729 UCEC WXS tumor CPT0064930010 2fbd49f6-4c1b-4bb8-a92c-27ac702d593f_gdc_realn.bam 44630343014 BAM harmonized CPTAC3 e35e206a-6a63-428d-9ee1-634c076e34f4 7d3f9f900d050281b8eb4d5499c5202d {"aliquot_tag": "ALQ_53536800", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00732.MethArray.Green.T C3N-00732 UCEC Methylation_Array tumor CPT0089600009 202234380051_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a268263b-71e2-4f55-be19-5f02215cb807 113280a132061b235becbb473c349b0b {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.MethArray.Red.T C3N-00732 UCEC Methylation_Array tumor CPT0089600009 202234380051_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 94a9b522-7da1-4ab0-8885-38791f88fc9f 13a55a2f8fd0673c853136ef4da624cd {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.miRNA-Seq.S4_L007_R1.T C3N-00732 UCEC miRNA-Seq tumor CPT0089600006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAAAAG_S4_L007_R1_001.unaln.bam 221859569 BAM S4_L007_R1 submitted_unaligned CPTAC3 5569f880-6676-4707-89dc-7e6425da81f8 41ff851da4cdb2a85ec4580bb44479af {"aliquot_tag": "ALQ_61804783", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.miRNA-Seq.T.hg38 C3N-00732 UCEC miRNA-Seq tumor CPT0089600006 34c99399-5574-4d5f-95dd-567174cd4564_mirnaseq_gdc_realn.bam 241290857 BAM harmonized CPTAC3 1babbffa-e426-41c0-a767-87df621265e2 a847651a832123f08f41c7215f8594bc {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.chimeric.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.chimeric.gdc_realn.bam 61420627 BAM chimeric harmonized CPTAC3 52ecbffd-6cfb-4cc0-9601-4bcca812d840 454be922752f2e42ba3d44523728be3f {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.chimeric.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.chimeric.gdc_realn.bam 68837977 BAM chimeric harmonized CPTAC3 7f011230-29b2-40a6-aede-04258105bfa4 20cbe1ff85ceb71d4020464399dfc897 {"aliquot_tag": "ALQ_a6474e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.genomic.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.genomic.gdc_realn.bam 9685747131 BAM genomic harmonized CPTAC3 ff782790-c272-4b1c-98dc-97e1c2ae83df 2585ea835d6cff21d0cd45a8778649da {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.genomic.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.genomic.gdc_realn.bam 5931318204 BAM genomic harmonized CPTAC3 7700e71e-8bde-49b9-aefe-c76b4b63b487 a2c8cf5f0efd77ea264dd9091f72f761 {"aliquot_tag": "ALQ_a6474e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.S21_R1.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R1_001.fastq.gz 3352594703 FASTQ S21_R1 submitted_unaligned CPTAC3 ed67403c-314c-4352-8dfd-50ddb63df81d 7666b605b616a653e46aa73385583dbf {"aliquot_tag": "ALQ_a6474e0", "sample": "S21", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.S21_R2.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R2_001.fastq.gz 3534696609 FASTQ S21_R2 submitted_unaligned CPTAC3 994dbf32-f9e5-4eeb-bc3c-92ebca3edbed 784c00f6a138065125c5901d12daf20f {"aliquot_tag": "ALQ_a6474e0", "sample": "S21", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.S7_L007_R1.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R1_001.fastq.gz 4412318758 FASTQ S7_L007_R1 submitted_unaligned CPTAC3 3571f90c-5e38-4fc8-a3fc-3dc98ca19a38 2f65f1d3dc6b525df9b041b39c0b11c9 {"aliquot_tag": "ALQ_61804783", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.S7_L007_R2.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R2_001.fastq.gz 4660981129 FASTQ S7_L007_R2 submitted_unaligned CPTAC3 69c052f4-e3ba-45c0-95f7-85356b3434d3 03aab056d319ffebf2beda4e9fe6da93 {"aliquot_tag": "ALQ_61804783", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.transcriptome.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.transcriptome.gdc_realn.bam 9860118481 BAM transcriptome harmonized CPTAC3 0ec8861e-5648-4915-aaae-d5258fbb54b6 77733efe18484fba2d279002f014b25a {"aliquot_tag": "ALQ_61804783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.RNA-Seq.transcriptome.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.transcriptome.gdc_realn.bam 3981449465 BAM transcriptome harmonized CPTAC3 7219d535-f9ce-4c49-96af-b83d16e34368 353b2c7279ddf64fc17a5fb74a10c68a {"aliquot_tag": "ALQ_a6474e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.WGS.N C3N-00732 UCEC WGS blood_normal CPT0091360002 CPT0091360002.WholeGenome.RP-1303.bam 61312316100 BAM submitted_aligned CPTAC3 76e6bff3-23ec-4287-bcb7-2f1584ab484f 0d7e164ca9a9726822a73afaa677e106 {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00732.WGS.N.hg38 C3N-00732 UCEC WGS blood_normal CPT0091360002 37b66075-5917-4067-9205-f63e6a26cc77_wgs_gdc_realn.bam 91540470246 BAM harmonized CPTAC3 177b9764-3478-4067-bc02-114a7af40061 2facdc0ee9091325c08f926132ec2494 {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00732.WGS.T C3N-00732 UCEC WGS tumor CPT0089600009 CPT0089600009.WholeGenome.RP-1303.bam 65123885581 BAM submitted_aligned CPTAC3 67937f8e-a495-4b41-8e3a-8c953ac9b883 23cf165ee8f60a81f85fa6ccb1d73e19 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.WGS.T.hg38 C3N-00732 UCEC WGS tumor CPT0089600009 3b194131-a71d-42d3-9af1-c87dc2865d07_wgs_gdc_realn.bam 95606552973 BAM harmonized CPTAC3 e3643df5-7688-4d4c-8757-be034f66ee6c 7ada00057636e2a4a93c0c9242a66c94 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.WXS.N C3N-00732 UCEC WXS blood_normal CPT0091360002 CPT0091360002.WholeExome.RP-1303.bam 30292435325 BAM submitted_aligned CPTAC3 d47417b7-4de8-473c-ad83-1ed493adb267 5ee3aa552b15ddeb1b12cefc5e74965a {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00732.WXS.N.hg38 C3N-00732 UCEC WXS blood_normal CPT0091360002 37b66075-5917-4067-9205-f63e6a26cc77_wxs_gdc_realn.bam 40858515482 BAM harmonized CPTAC3 150a6603-767c-425d-9b07-0ad7cb82ee79 cf502ca66d3fa7e1fff6ec2e0f82e6fa {"aliquot_tag": "ALQ_4625a970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00732.WXS.T C3N-00732 UCEC WXS tumor CPT0089600009 CPT0089600009.WholeExome.RP-1303.bam 42325083232 BAM submitted_aligned CPTAC3 c96a522c-0c11-4142-8b9c-14783ab6c4d0 4f6e3b471ca649337fdad5c6d664a0c6 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00732.WXS.T.hg38 C3N-00732 UCEC WXS tumor CPT0089600009 3b194131-a71d-42d3-9af1-c87dc2865d07_wxs_gdc_realn.bam 58088447525 BAM harmonized CPTAC3 0d4d050c-a109-4b3f-87d4-9653b509a66d 169f37555e0c62c91c9a4508dbb2bdf5 {"aliquot_tag": "ALQ_f13f5a12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00733.DUP_1e8cc766.MethArray.Green.T C3N-00733 CCRCC Methylation_Array tumor CPT0025890012 204372030087_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1889f376-da83-4273-9711-0857716ff931 5fb6271f9805a8708b54e682b4c5086f {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_1e8cc766.MethArray.Red.T C3N-00733 CCRCC Methylation_Array tumor CPT0025890012 204372030087_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 62ca4ef9-6d20-42e3-9721-16f092172713 fba748dd965fc3568f0cd1b2dc1fd50b {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_1e8cc766.WGS.T C3N-00733 CCRCC WGS tumor CPT0025890012 CPT0025890012.WholeGenome.RP-2158.bam 24657860325 BAM submitted_aligned CPTAC3 e89b93f2-6a79-4c78-8714-8098be2242c7 27892958c70da1feb77849981dce8324 {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_1e8cc766.WGS.T.hg38 C3N-00733 CCRCC WGS tumor CPT0025890012 e15b8449-51aa-4dae-b6a2-091f1ce010ef_wgs_gdc_realn.bam 73929153560 BAM harmonized CPTAC3 81d5fffd-d389-4279-a6fb-7f332a77aa4a 5c349e58e86f04bf8d9d34860c23fbc9 {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_1e8cc766.WXS.T C3N-00733 CCRCC WXS tumor CPT0025890012 CPT0025890012.WholeExome.RP-1303.bam 19288413298 BAM submitted_aligned CPTAC3 732ccd38-ca36-45f9-9f8e-735ec1c0eb09 99d4f82924d1b0c1c0d6564ea6b6ec58 {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_1e8cc766.WXS.T.hg38 C3N-00733 CCRCC WXS tumor CPT0025890012 e15b8449-51aa-4dae-b6a2-091f1ce010ef_wxs_gdc_realn.bam 27064453923 BAM harmonized CPTAC3 66b8aa87-e8e1-4880-b315-99a94da8211b 6cc520263392a1e9f5eeded564f88f2a {"aliquot_tag": "DUP_1e8cc766", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_56099e7b.MethArray.Green.T C3N-00733 CCRCC Methylation_Array tumor CPT0025900009 204367490056_R01C01_Grn.idat 13677888 IDAT Green NA CPTAC3 b43fac2a-3838-4f2c-8516-b93c5a2d472c 4320429665a3d2b4b42c8b2d1758a1c7 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_56099e7b.MethArray.Red.T C3N-00733 CCRCC Methylation_Array tumor CPT0025900009 204367490056_R01C01_Red.idat 13677888 IDAT Red NA CPTAC3 b918e3bb-530d-4893-b906-a16d7e529799 090d9546204fda9fac4aa16b5b3c8787 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_56099e7b.WGS.T C3N-00733 CCRCC WGS tumor CPT0025900009 CPT0025900009.WholeGenome.RP-2158.bam 22561331474 BAM submitted_aligned CPTAC3 d6cb34ea-117a-472e-b7bb-930d2970cc7a 847ca90bd9caf969f39872ef951c76c9 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_56099e7b.WGS.T.hg38 C3N-00733 CCRCC WGS tumor CPT0025900009 8074ef94-50e6-45fc-af6e-37fd9cdbc83f_wgs_gdc_realn.bam 66518211385 BAM harmonized CPTAC3 8e6cb91e-a2b4-4df0-8d8b-8d8cee3fa15d 211833a426a788c2afa5d5ccb6b19928 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_56099e7b.WXS.T C3N-00733 CCRCC WXS tumor CPT0025900009 CPT0025900009.WholeExome.RP-1303.bam 21870644758 BAM submitted_aligned CPTAC3 d95dfbb6-d3b2-4f0a-93ea-da6621ce09d4 9a8c5750e4961361229a9709f9978c7c {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_56099e7b.WXS.T.hg38 C3N-00733 CCRCC WXS tumor CPT0025900009 8074ef94-50e6-45fc-af6e-37fd9cdbc83f_wxs_gdc_realn.bam 30483446225 BAM harmonized CPTAC3 085df112-21fb-4151-bdde-ab7b0c5214ad c200a8e8418daefdfab6522dc8e51727 {"aliquot_tag": "DUP_56099e7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_90452faf.miRNA-Seq.S28_L005_R1.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025890009 200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L005_R1_001.unaln.bam 287602700 BAM S28_L005_R1 submitted_unaligned CPTAC3 768e1e96-378a-402e-ae4a-ba49134aa900 8d987d89d6b13b6818b3fd55ec83173c {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_90452faf.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025890009 2d0b18c4-06b3-493d-8fb2-fcb6abb04ced_mirnaseq_gdc_realn.bam 320632588 BAM harmonized CPTAC3 b22f9ce1-b57b-49e3-910b-0b6e8d6b21e6 2f1710dc22210ed98c6b3d3a2a593a3c {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_90452faf.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.chimeric.gdc_realn.bam 102217423 BAM chimeric harmonized CPTAC3 69f21abe-dc80-4740-87a3-c7ff5955d7fb 4aa5af7d097d3873c5d1fdbb66e45288 {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_90452faf.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.genomic.gdc_realn.bam 8929253402 BAM genomic harmonized CPTAC3 5d25aaa8-ca65-4ba5-8d69-da251938e2ea bf256c12c372530b62507c0f998c620e {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_90452faf.RNA-Seq.S39_L007_R1.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R1_001.fastq.gz 4030868305 FASTQ S39_L007_R1 submitted_unaligned CPTAC3 683ea76b-a4d4-42bc-802f-407d86f2db8c c7622a2b8690f38d64e26f63f86104b0 {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_90452faf.RNA-Seq.S39_L007_R2.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R2_001.fastq.gz 4779589866 FASTQ S39_L007_R2 submitted_unaligned CPTAC3 3a96f82a-c491-46e5-9910-b23d52f60c71 bfea20f342d61070710e6df8183e1afa {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S39", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_90452faf.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.transcriptome.gdc_realn.bam 13524989040 BAM transcriptome harmonized CPTAC3 622a1750-04ee-49cd-88a9-9ab14bf58406 ce4db59d5a24ece47479719c7b3f3d19 {"aliquot_tag": "DUP_90452faf", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_c6b683ea.miRNA-Seq.S35_L005_R1.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025900006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L005_R1_001.unaln.bam 216224719 BAM S35_L005_R1 submitted_unaligned CPTAC3 c2526660-c719-4477-8f3b-27879585a8ca 87fd7ebd7dce01bafadbc59e1496e354 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_c6b683ea.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025900006 28cf323b-ac0c-473c-b72a-96a357fe1ac0_mirnaseq_gdc_realn.bam 237028288 BAM harmonized CPTAC3 039c8f1e-ac79-45c1-9d13-a50d5f065529 0f3a4e81129fd198597f6bf410663bd6 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_c6b683ea.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.chimeric.gdc_realn.bam 182542817 BAM chimeric harmonized CPTAC3 93317062-fc6c-4172-9a65-f0ce05160b9a a4c6a98a4094b80e448c894684041b17 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_c6b683ea.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.genomic.gdc_realn.bam 7811256435 BAM genomic harmonized CPTAC3 8ada998d-5f05-4bc8-acbb-11a8fed18c75 a4cb42ad670e4b5620c95337ce3d4c6d {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_c6b683ea.RNA-Seq.S32_L005_R1.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R1_001.fastq.gz 3662428965 FASTQ S32_L005_R1 submitted_unaligned CPTAC3 b5289396-3301-4936-a42e-feb806cc356e 5e9662e86b8810b9c761e6007b6324fd {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_c6b683ea.RNA-Seq.S32_L005_R2.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R2_001.fastq.gz 4337400614 FASTQ S32_L005_R2 submitted_unaligned CPTAC3 d4496247-bbd6-4f4f-ae65-d46d22bfc354 15618e527b3062c6bdcf3505c8d2afa5 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S32", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.DUP_c6b683ea.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.transcriptome.gdc_realn.bam 11313198448 BAM transcriptome harmonized CPTAC3 cd8635d7-c1ff-441e-8d45-69f6d69ab740 39586ba82440c0ca4b85a819e61e7e37 {"aliquot_tag": "DUP_c6b683ea", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.MethArray.Green.A C3N-00733 CCRCC Methylation_Array tissue_normal CPT0025920009 203027380024_R05C01_Grn.idat 13676229 IDAT Green NA CPTAC3 8989635e-ce61-4b14-bbf7-5221e0901d19 25bbc9c7f73f3bdf7ef39c60a70b7906 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.MethArray.Green.T C3N-00733 CCRCC Methylation_Array tumor CPT0025880009 202178770100_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 219e2b7e-0c3e-4f46-9f3e-39e32e2b34a4 4dea1874bd8165e3ebe2df6002e74b47 {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.MethArray.Red.A C3N-00733 CCRCC Methylation_Array tissue_normal CPT0025920009 203027380024_R05C01_Red.idat 13676229 IDAT Red NA CPTAC3 926e4e40-91d5-4034-95c7-46bf906f421f 28a3382c753786ecfbea1b59608a3491 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.MethArray.Red.T C3N-00733 CCRCC Methylation_Array tumor CPT0025880009 202178770100_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 ce9e0c16-3f6c-4b49-a55e-18103148317f 27fad330e4b4b8561dab99bd3afe320a {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.miRNA-Seq.A.hg38 C3N-00733 CCRCC miRNA-Seq tissue_normal CPT0025920006 d68c03e8-5832-423b-a661-1849ed3f5b56_mirnaseq_gdc_realn.bam 263190005 BAM harmonized CPTAC3 57e0e4de-eb70-40e7-8529-3b78668cc771 8bf8d4895b2ecd3b760d54cbdb41131e {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.miRNA-Seq.S12_L001_R1.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025880006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGAAA_S12_L001_R1_001.unaln.bam 273686994 BAM S12_L001_R1 submitted_unaligned CPTAC3 f6242666-5eb0-4cd3-bcb3-2c238d9dc3aa 5758a2c51c186e63313a680ff7002779 {"aliquot_tag": "ALQ_3d9a1b8e", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.miRNA-Seq.S7_L003_R1.A C3N-00733 CCRCC miRNA-Seq tissue_normal CPT0025920006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L003_R1_001.unaln.bam 239324256 BAM S7_L003_R1 submitted_unaligned CPTAC3 59cb2240-19d9-402c-92fd-56494c90cf3c 3fabe9453f69cf54af98d210b25becfd {"aliquot_tag": "ALQ_bc76d08a", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025880006 47281ea3-2e85-4d26-af08-9d6987909ef5_mirnaseq_gdc_realn.bam 298985025 BAM harmonized CPTAC3 01c05649-de2f-4da3-a13b-415ffe3cc648 5200f48ab75abd0ddd3b046de08ef73a {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.RNA-Seq.chimeric.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.chimeric.gdc_realn.bam 37013443 BAM chimeric harmonized CPTAC3 92189932-53ad-4b30-8700-bc3617fa0579 df4e1f30008225a6294214a34712731d {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.chimeric.gdc_realn.bam 67200709 BAM chimeric harmonized CPTAC3 ce546501-1435-432e-b7e9-c7db89b68c7c 699d9e3f35a0ee93de4e143c291947e1 {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.RNA-Seq.genomic.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.genomic.gdc_realn.bam 6567931312 BAM genomic harmonized CPTAC3 8b44acd7-e881-46d0-ac33-5aaa85a2286c fdc27cd42eaf9e6f57fabe16af4c8017 {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.genomic.gdc_realn.bam 8187253488 BAM genomic harmonized CPTAC3 4c3a5fd4-15e1-42b8-b7a4-ed727b738708 4ba9edce74a29300e7fbbdc90e7d4b27 {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.RNA-Seq.S19_L005_R1.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3327298978 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 e8f18475-f40c-430e-9d36-40289d91be5d ab80b3d07435d2c9e49ed835b7945e6e {"aliquot_tag": "ALQ_bc76d08a", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.RNA-Seq.S19_L005_R2.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R2_001.fastq.gz 3697005122 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 43395028-ed4a-4afe-bd87-4f45cee73cec bc99dcda07d239643ec133d78ea06ce0 {"aliquot_tag": "ALQ_bc76d08a", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.RNA-Seq.S8_L002_R1.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R1_001.fastq.gz 3838590591 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 28d915d0-355d-4a40-b2b0-4861b4223b89 3f0f8d5ec275d8a320a802bbe66e2be9 {"aliquot_tag": "ALQ_3d9a1b8e", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.RNA-Seq.S8_L002_R2.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4229170027 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 3e6b35d1-546a-4b2c-bbdf-17548ebefbf8 584840d094b19ccd240d01cd661c9f19 {"aliquot_tag": "ALQ_3d9a1b8e", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.RNA-Seq.transcriptome.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.transcriptome.gdc_realn.bam 8401432832 BAM transcriptome harmonized CPTAC3 d6af54a4-820c-42b5-9773-44d22594232a feb4b33c082622719934c4affc86a465 {"aliquot_tag": "ALQ_bc76d08a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.transcriptome.gdc_realn.bam 12154517211 BAM transcriptome harmonized CPTAC3 405b40a2-d677-4a78-bf1b-c24942713a40 2aeeb5526bd557952b0451a5f06174e2 {"aliquot_tag": "ALQ_3d9a1b8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.WGS.A C3N-00733 CCRCC WGS tissue_normal CPT0025920009 CPT0025920009.WholeGenome.RP-1303.bam 56669417340 BAM submitted_aligned CPTAC3 11ed7bba-50f0-421c-99ff-8a0423ce2fd8 bf047258266ff98ed3f6fface0cd6791 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.WGS.A.hg38 C3N-00733 CCRCC WGS tissue_normal CPT0025920009 cd9ca7d4-2f48-4613-a135-68b674f9c906_wgs_gdc_realn.bam 82861410237 BAM harmonized CPTAC3 a56ee9bd-ac7b-4f66-9d2c-203d2e174644 30c116716dc23e9ff20a9c4702f3b4ee {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.WGS.N C3N-00733 CCRCC WGS blood_normal CPT0028480002 CPT0028480002.WholeGenome.RP-1303.bam 59533734415 BAM submitted_aligned CPTAC3 803cbd54-d974-4b8f-b026-c6f74b345563 27d35decc9e8d0dd5a23d5355d578d7e {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00733.WGS.N.hg38 C3N-00733 CCRCC WGS blood_normal CPT0028480002 c29ed504-d297-4fc3-ad09-200319492ed4_gdc_realn.bam 85943939058 BAM harmonized CPTAC3 89f8f75e-2439-42f0-ab92-985a4af7b831 9450b7c991b6a92b49fdf07c366786b5 {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00733.WGS.T C3N-00733 CCRCC WGS tumor CPT0025880009 CPT0025880009.WholeGenome.RP-1303.bam 60363464973 BAM submitted_aligned CPTAC3 d41bfeab-b766-4784-803c-2872fa28859e 20708170ffafa0c71c3f0e6897a28a1c {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.WGS.T.hg38 C3N-00733 CCRCC WGS tumor CPT0025880009 2ad75cb1-668a-4d5a-b62c-254e0b82d045_gdc_realn.bam 87635615173 BAM harmonized CPTAC3 af6fcd27-b45f-488b-8c91-1370921c15fd cc5a6cc75dc0414e37b1b513b8b03077 {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.WXS.A C3N-00733 CCRCC WXS tissue_normal CPT0025920009 CPT0025920009.WholeExome.RP-1303.bam 45601848134 BAM submitted_aligned CPTAC3 be33fdb0-b420-4488-b721-6683032bd325 4a70bca11b7109c67dfddb060b592b3a {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.WXS.A.hg38 C3N-00733 CCRCC WXS tissue_normal CPT0025920009 cd9ca7d4-2f48-4613-a135-68b674f9c906_wxs_gdc_realn.bam 61570062513 BAM harmonized CPTAC3 c0d2255b-795b-48ba-b3c2-f6a86e08301a 0f9935ce3cb211288512391b79cbd8e9 {"aliquot_tag": "ALQ_2cc9cd1b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00733.WXS.N C3N-00733 CCRCC WXS blood_normal CPT0028480002 CPT0028480002.WholeExome.RP-1303.bam 27066837322 BAM submitted_aligned CPTAC3 17009ae6-288a-4c09-aa0a-98c65920d0d2 3ba696e6bc84f1bd1b225dd598520679 {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00733.WXS.N.hg38 C3N-00733 CCRCC WXS blood_normal CPT0028480002 c29ed504-d297-4fc3-ad09-200319492ed4_gdc_realn.bam 36976648847 BAM harmonized CPTAC3 a4d7873b-dd6b-4f7d-bd66-ed3379d93007 14dbf41bc07122b3f3a7a452809aafcc {"aliquot_tag": "ALQ_2ce27e2c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00733.WXS.T C3N-00733 CCRCC WXS tumor CPT0025880009 CPT0025880009.WholeExome.RP-1303.bam 26311645155 BAM submitted_aligned CPTAC3 a0740eef-1b59-412e-9a8f-3bc23ac32118 25017768fec088a13e94212dbfa4278b {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00733.WXS.T.hg38 C3N-00733 CCRCC WXS tumor CPT0025880009 2ad75cb1-668a-4d5a-b62c-254e0b82d045_gdc_realn.bam 36133726733 BAM harmonized CPTAC3 2475e5cf-cadc-48ea-af0e-fc1b20eaf8a8 7096527d318250909c775e2bba0cf918 {"aliquot_tag": "ALQ_ad25061f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.MethArray.Green.T C3N-00734 UCEC Methylation_Array tumor CPT0026030010 202178770083_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ec216333-38e0-450c-80a1-4e772ff8c366 1f4dd59576250e512f31bb2cdc3feda6 {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.MethArray.Red.T C3N-00734 UCEC Methylation_Array tumor CPT0026030010 202178770083_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 0b6317cf-1057-479b-80d8-89a9c2b8a988 e5e68ca1aa753c4b678733905593da1a {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.miRNA-Seq.S44_L005_R1.T C3N-00734 UCEC miRNA-Seq tumor CPT0026030007 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L005_R1_001.unaln.bam 191511272 BAM S44_L005_R1 submitted_unaligned CPTAC3 1d3c45de-6c7a-4710-af2a-dd87c6483bf4 6489ff797e85aefbd136070379bb4725 {"aliquot_tag": "ALQ_e0f682f9", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.miRNA-Seq.T.hg38 C3N-00734 UCEC miRNA-Seq tumor CPT0026030007 f7b784b2-9b9c-4f03-9cdd-41dcc512c96a_mirnaseq_gdc_realn.bam 212929994 BAM harmonized CPTAC3 cabb9bdf-3fc0-490a-92b3-0c94b1f33fed 6197af6adfceed2fe1a4fcc0045a1f07 {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.chimeric.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.chimeric.gdc_realn.bam 50823506 BAM chimeric harmonized CPTAC3 db3f2e50-2fc3-40a7-99b8-d744bb0af890 70f67394d776ad5676004723f296d15f {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.chimeric.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.chimeric.gdc_realn.bam 48103922 BAM chimeric harmonized CPTAC3 1002c63b-5759-49d8-b272-ada70eef9319 a4ed61193047c68abd77f299ffd55551 {"aliquot_tag": "ALQ_43253f6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.genomic.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.genomic.gdc_realn.bam 8729990643 BAM genomic harmonized CPTAC3 da198d96-6999-4a8a-b2e9-0db17b81e7ae 3f93d33baf15a43d1e645da7854b5ff6 {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.genomic.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.genomic.gdc_realn.bam 17443474399 BAM genomic harmonized CPTAC3 5e74605c-b4bf-4fcd-b0db-b279d4c3dabd 912023536fbffcfe029d78689fa2f70f {"aliquot_tag": "ALQ_43253f6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.S75_R1.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R1_001.fastq.gz 8517069624 FASTQ S75_R1 submitted_unaligned CPTAC3 bef96fc9-2027-4514-b529-268a201cd862 ac739a2957fdcf4f348042c211ea57ef {"aliquot_tag": "ALQ_43253f6d", "sample": "S75", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.S75_R2.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R2_001.fastq.gz 9188877157 FASTQ S75_R2 submitted_unaligned CPTAC3 f3b1bc9b-5720-4770-ba78-e4dd8d3f784e 9ed8951cba75fafd4090bce1fe3ead16 {"aliquot_tag": "ALQ_43253f6d", "sample": "S75", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.S7_L002_R1.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3795451643 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 9faa7052-ed20-4706-97f2-c3f183a4a0bd 0d1fa653e6f23d22403f7532778a9346 {"aliquot_tag": "ALQ_e0f682f9", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.S7_L002_R2.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4182385550 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 4518b21b-b9a3-4261-b0e1-27b9f7d0e282 f89526247cdc2cc108ca05871fd3c2b9 {"aliquot_tag": "ALQ_e0f682f9", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.transcriptome.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.transcriptome.gdc_realn.bam 11773631206 BAM transcriptome harmonized CPTAC3 665a2ae1-096f-48f9-9bad-6e1a3b110d19 4e06688364ce06b0aa04e85f0d0f0810 {"aliquot_tag": "ALQ_e0f682f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.RNA-Seq.transcriptome.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.transcriptome.gdc_realn.bam 13406287478 BAM transcriptome harmonized CPTAC3 27ab7428-ab97-47a1-aaf5-929c3bd4dba1 62751a8f3a07dc1d0b3bb7cd4463fccb {"aliquot_tag": "ALQ_43253f6d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.WGS.N C3N-00734 UCEC WGS blood_normal CPT0028500002 CPT0028500002.WholeGenome.RP-1303.bam 60380365868 BAM submitted_aligned CPTAC3 c910a937-941a-40c3-ae7a-60b10e1d431d 9943c4e1a2bd20b229b547ee415d51c1 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00734.WGS.N.hg38 C3N-00734 UCEC WGS blood_normal CPT0028500002 d17afc43-9d34-4784-87aa-12c19595d871_gdc_realn.bam 87704873123 BAM harmonized CPTAC3 8a8cced8-56c3-41d5-aaab-2cb28481e9c1 1ddc37d7e7c543d3e9e71d5cd79bd8c9 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00734.WGS.T C3N-00734 UCEC WGS tumor CPT0026030010 CPT0026030010.WholeGenome.RP-1303.bam 63714294069 BAM submitted_aligned CPTAC3 a5dbaf32-01b9-49cb-bf04-ad5d55818385 6dfd38205e4b50d02d7f6e45d9c01c2d {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.WGS.T.hg38 C3N-00734 UCEC WGS tumor CPT0026030010 0750565e-93eb-43b6-87d3-8f84199fc1a0_gdc_realn.bam 92936727303 BAM harmonized CPTAC3 2a812ded-32cc-466b-9ede-be47f74903f7 a7fd6cb74cc340a91a83a5e75768f084 {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.WXS.N C3N-00734 UCEC WXS blood_normal CPT0028500002 CPT0028500002.WholeExome.RP-1303.bam 46719531936 BAM submitted_aligned CPTAC3 e47c2ca6-cc2b-4d41-a788-21a8419bb2d5 b655abaf25a4fd6fa692296f04a201b3 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00734.WXS.N.hg38 C3N-00734 UCEC WXS blood_normal CPT0028500002 d17afc43-9d34-4784-87aa-12c19595d871_gdc_realn.bam 63279979402 BAM harmonized CPTAC3 c9c4d8b9-6c91-46e1-b6f8-d759c7f02165 915bed86f097d050a3ccf9c268f8c0c9 {"aliquot_tag": "ALQ_d7cee648", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00734.WXS.T C3N-00734 UCEC WXS tumor CPT0026030010 CPT0026030010.WholeExome.RP-1303.bam 21147107786 BAM submitted_aligned CPTAC3 51a2d1b9-cfa4-4dee-8422-a3d360c47bd6 bb873635f548143a1786a4429c6efe6a {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00734.WXS.T.hg38 C3N-00734 UCEC WXS tumor CPT0026030010 0750565e-93eb-43b6-87d3-8f84199fc1a0_gdc_realn.bam 28616224542 BAM harmonized CPTAC3 b3fb76a3-c463-4fc1-b12c-88dbe5285071 b20fa96d5df4eb711fa2f6c8b7a7fb3d {"aliquot_tag": "ALQ_6789261b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.MethArray.Green.A C3N-00737 LUAD Methylation_Array tissue_normal CPT0090200008 203027390105_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 7be69897-5c56-487e-b584-6b37a583b3a6 22aef4ca2180efd7a1b6d7901a62f613 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.MethArray.Green.T C3N-00737 LUAD Methylation_Array tumor CPT0090170010 202234380062_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b5f38a69-2957-455e-bf33-ab48402cafdb ebbf5d9e2a8c4982cab2d0d268b29746 {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.MethArray.Red.A C3N-00737 LUAD Methylation_Array tissue_normal CPT0090200008 203027390105_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 be4179c6-f5d6-4fcf-8123-0477321f52bf 97e174389899195bfaee8ef4138062f5 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.MethArray.Red.T C3N-00737 LUAD Methylation_Array tumor CPT0090170010 202234380062_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 f5dea8c1-18b8-419a-b670-4c0c1dbd2b5e 1ec388f3ac5ee304a042ce88ed444abc {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.miRNA-Seq.A.hg38 C3N-00737 LUAD miRNA-Seq tissue_normal CPT0090200006 70b4344b-59b0-4875-92ed-ad1473fff315_mirnaseq_gdc_realn.bam 208674821 BAM harmonized CPTAC3 fdb5ea2a-af1d-4585-b83c-d07a08506a4e 6968c0f759a79d889171e05ee0430d0a {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.miRNA-Seq.S21_L006_R1.T C3N-00737 LUAD miRNA-Seq tumor CPT0090170007 180828_UNC32-K00270_0112_AHWTLNBBXX_TTAGGC_S21_L006_R1_001.unaln.bam 244502731 BAM S21_L006_R1 submitted_unaligned CPTAC3 b4285cdb-4bc2-4a89-ac85-70d4b82b0247 707d3a19dcea323c6498dd4f68b2559d {"aliquot_tag": "ALQ_e090def0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.miRNA-Seq.S5_L005_R1.A C3N-00737 LUAD miRNA-Seq tissue_normal CPT0090200006 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L005_R1_001.unaln.bam 186980065 BAM S5_L005_R1 submitted_unaligned CPTAC3 c0d7278f-9d27-4864-a102-20f986fcbc50 248a7a5cf49dc3fc485b47b2edd4f4a2 {"aliquot_tag": "ALQ_a32340d8", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.miRNA-Seq.T.hg38 C3N-00737 LUAD miRNA-Seq tumor CPT0090170007 72f6d62c-9789-48c1-8857-feb141779af2_mirnaseq_gdc_realn.bam 270343466 BAM harmonized CPTAC3 899b845e-c859-43fe-a784-10a241551704 471a3f45e9302dd196cbedd532fba6a1 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.RNA-Seq.chimeric.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.chimeric.gdc_realn.bam 71388572 BAM chimeric harmonized CPTAC3 28ba2aea-8bc7-44a7-80cb-426292597593 c252cca73151618c6c48bc7565792d37 {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.RNA-Seq.chimeric.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.chimeric.gdc_realn.bam 35280661 BAM chimeric harmonized CPTAC3 13f5d040-c163-4022-b40f-b039883129ef d3e0cf03eee5b3fce4123cb2fe4f8d12 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.RNA-Seq.genomic.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.genomic.gdc_realn.bam 7117464114 BAM genomic harmonized CPTAC3 1bf34b9f-3d5a-46e7-b57a-34a9bc369885 0e2d14bcbcc08a6bd880ecaf2f9d9387 {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.RNA-Seq.genomic.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.genomic.gdc_realn.bam 10221050800 BAM genomic harmonized CPTAC3 9acd2dd7-96b3-4930-b029-4bb7fec01649 c22fd1f682e4d8b78152e154cb4cc5f3 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.RNA-Seq.S17_L007_R1.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 3445933848 FASTQ S17_L007_R1 submitted_unaligned CPTAC3 26b74818-5c49-4a93-ad0b-d5656b51ac02 0161c0506efa87ec40bbd171dc44ccc1 {"aliquot_tag": "ALQ_a32340d8", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.RNA-Seq.S17_L007_R2.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 3633805992 FASTQ S17_L007_R2 submitted_unaligned CPTAC3 b8af1e2c-a7c8-4e2d-9310-b85515af594b b2d8317b123b7a3f8eaa51eaafcbf226 {"aliquot_tag": "ALQ_a32340d8", "sample": "S17", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.RNA-Seq.S8_L002_R1.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3932735138 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 0cf24649-f4d0-499c-b410-101dd0355bdf 5ef82476ead15e70161ebcd0de4edfb4 {"aliquot_tag": "ALQ_e090def0", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.RNA-Seq.S8_L002_R2.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4279708360 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 ca93f4e9-eb76-4ea8-b818-db5ebd003cb1 6dea5974b633cbc5a6e59785f208267d {"aliquot_tag": "ALQ_e090def0", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.RNA-Seq.transcriptome.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.transcriptome.gdc_realn.bam 8319978985 BAM transcriptome harmonized CPTAC3 7464fc8b-c3d5-490a-8bec-4a6240c9098e b8e3beb458ce15d2b79dbbd0fd094a64 {"aliquot_tag": "ALQ_a32340d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.RNA-Seq.transcriptome.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.transcriptome.gdc_realn.bam 9888296326 BAM transcriptome harmonized CPTAC3 cc7d30e2-a8fb-47d3-aeab-bab9c126e478 9f273a96dbf9f9fdbf6f5cf95404c148 {"aliquot_tag": "ALQ_e090def0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.WGS.A C3N-00737 LUAD WGS tissue_normal CPT0090200008 CPT0090200008.WholeGenome.RP-1303.bam 53856792697 BAM submitted_aligned CPTAC3 07ededa8-b079-43d7-87b1-2cd20d4fd449 556e3f2e0be2ab20f7218d067d45ab36 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.WGS.A.hg38 C3N-00737 LUAD WGS tissue_normal CPT0090200008 d97ee735-5b0e-4f83-8eab-9401da6506f9_wgs_gdc_realn.bam 78239175794 BAM harmonized CPTAC3 ca45eef1-d1e6-46ac-95e0-4a12f7984594 cbafa0ad6c8cc4400f181c22cdb9b01e {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.WGS.N C3N-00737 LUAD WGS blood_normal CPT0091440002 CPT0091440002.WholeGenome.RP-1303.bam 62269641593 BAM submitted_aligned CPTAC3 01e2c890-8ae2-4a77-913e-6305b4ebe2c2 bd48b869b72a31da457fffc8ff930ae2 {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00737.WGS.N.hg38 C3N-00737 LUAD WGS blood_normal CPT0091440002 fec6902d-836e-4e54-a217-9dfae7cce48e_wgs_gdc_realn.bam 92316798434 BAM harmonized CPTAC3 91814b2e-3f44-4380-8546-d155057cd989 8b08aa0128446a86a65421ca6487e567 {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00737.WGS.T C3N-00737 LUAD WGS tumor CPT0090170010 CPT0090170010.WholeGenome.RP-1303.bam 60276933296 BAM submitted_aligned CPTAC3 8d158cc5-76e5-4c2f-89cb-e70990510ea7 d93786d5a89b3bcccd24d5b0c593d633 {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.WGS.T.hg38 C3N-00737 LUAD WGS tumor CPT0090170010 0bf8d63d-3245-4ce1-8aab-f1fd4c0d94f6_wgs_gdc_realn.bam 88896219625 BAM harmonized CPTAC3 16f33b65-f446-4305-8c47-38511e55f088 5405bd7952b0042815f2f20d7bddce5b {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.WXS.A C3N-00737 LUAD WXS tissue_normal CPT0090200008 CPT0090200008.WholeExome.RP-1303.bam 28957481205 BAM submitted_aligned CPTAC3 e351b74a-7c14-4f9c-838e-42b96b2579b9 acd330a35556ee67977c936cae6bd711 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.WXS.A.hg38 C3N-00737 LUAD WXS tissue_normal CPT0090200008 d97ee735-5b0e-4f83-8eab-9401da6506f9_wxs_gdc_realn.bam 39779367138 BAM harmonized CPTAC3 1aa8ed13-eb18-43ca-942d-3000af0faa8f 84453f2460ac2c0bd843820ff8b970a3 {"aliquot_tag": "ALQ_449b6ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00737.WXS.N C3N-00737 LUAD WXS blood_normal CPT0091440002 CPT0091440002.WholeExome.RP-1303.bam 35674254211 BAM submitted_aligned CPTAC3 7bef8e90-2c2b-450a-9d9c-fda876fcf290 8f3881c7af5aa04af5a5ce34de3504a8 {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00737.WXS.N.hg38 C3N-00737 LUAD WXS blood_normal CPT0091440002 fec6902d-836e-4e54-a217-9dfae7cce48e_wxs_gdc_realn.bam 46886363270 BAM harmonized CPTAC3 1e35483d-3edb-4be6-88ae-381b56a4b0c1 523789afb108f87ea7bb977e65cfce6e {"aliquot_tag": "ALQ_21e0caa8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00737.WXS.T C3N-00737 LUAD WXS tumor CPT0090170010 CPT0090170010.WholeExome.RP-1303.bam 34767878710 BAM submitted_aligned CPTAC3 170c6129-9f38-499b-a528-b59eecd02273 21bd571e9765e79658474498b03b0286 {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00737.WXS.T.hg38 C3N-00737 LUAD WXS tumor CPT0090170010 0bf8d63d-3245-4ce1-8aab-f1fd4c0d94f6_wxs_gdc_realn.bam 46700398588 BAM harmonized CPTAC3 05e7eacc-00d3-4660-9c77-6bf1c2d66645 34e647092639e4f5bc6b0b82d6190b6d {"aliquot_tag": "ALQ_67ef7a12", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.DUP_5d166d88.WGS.T C3N-00738 LUAD WGS tumor CPT0112060009_2 CPT0112060009_2.WholeGenome.RP-2158.bam 154077440808 BAM submitted_aligned CPTAC3 94a31beb-521c-44b1-b306-9d0532bbd7d4 cceb8d50b2f7ad07cabad64ea6dfd7d1 {"aliquot_tag": "DUP_5d166d88", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00738.DUP_5d166d88.WGS.T.hg38 C3N-00738 LUAD WGS tumor CPT0112060009_2 f841b8b6-56fe-480c-8f34-d15a55acc14b_wgs_gdc_realn.bam 463286204766 BAM harmonized CPTAC3 116d9a61-1509-487b-ba1d-ffbb4c674bd0 2b299366f5e9d0aae8e9298ff6599c81 {"aliquot_tag": "DUP_5d166d88", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00738.MethArray.Green.A C3N-00738 LUAD Methylation_Array tissue_normal CPT0112080009 203028200104_R04C01_Grn.idat 13676235 IDAT Green NA CPTAC3 d698d456-1bb2-45d6-8fb8-ad0defd06f10 f7034fcf8b8323fe84bdce6b3db07f3c {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.MethArray.Green.T C3N-00738 LUAD Methylation_Array tumor CPT0112060009 202234380061_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f87a6472-ced1-49ec-8afb-0e9635927e31 41af4d424a4efb143da487378c77fd01 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.MethArray.Red.A C3N-00738 LUAD Methylation_Array tissue_normal CPT0112080009 203028200104_R04C01_Red.idat 13676235 IDAT Red NA CPTAC3 1dc9dd5b-03e1-4455-819a-262846683059 e3f06bfa00868c845829e98c863d862a {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.MethArray.Red.T C3N-00738 LUAD Methylation_Array tumor CPT0112060009 202234380061_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 35de26ce-50a7-4ed9-aa17-52d099634bed 581864114534bf28d796d625e7f30101 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.miRNA-Seq.A.hg38 C3N-00738 LUAD miRNA-Seq tissue_normal CPT0112080006 a9fe3af5-6dfa-4ab2-9a85-816f4531f913_mirnaseq_gdc_realn.bam 267977033 BAM harmonized CPTAC3 5a44d102-ef99-42be-8eb0-20fec87281a8 895b52c350295aec52644e67fc3dcee6 {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.miRNA-Seq.S36_L002_R1.T C3N-00738 LUAD miRNA-Seq tumor CPT0112060006 181113_UNC31-K00269_0164_AH23NNBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 299660493 BAM S36_L002_R1 submitted_unaligned CPTAC3 03d631d0-ad05-40ba-b558-fb3d4e92027b 005c6999b634ee779e18c1f77808b470 {"aliquot_tag": "ALQ_32aa0aac", "sample": "S36", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.miRNA-Seq.S37_L008_R1.A C3N-00738 LUAD miRNA-Seq tissue_normal CPT0112080006 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L008_R1_001.unaln.bam 245046421 BAM S37_L008_R1 submitted_unaligned CPTAC3 978ed708-acdc-413f-92cb-6b402283d225 befd2fb09d938dc4fc73dfd184f90e8a {"aliquot_tag": "ALQ_8d9ab4cd", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.miRNA-Seq.T.hg38 C3N-00738 LUAD miRNA-Seq tumor CPT0112060006 acedee26-c758-4bf5-91b1-78bc39abf825_mirnaseq_gdc_realn.bam 327446831 BAM harmonized CPTAC3 bbbd1abe-eab7-47db-afb0-628db88dc903 d15cc6431d0d9480228f16bfcfbf65db {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.RNA-Seq.chimeric.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.chimeric.gdc_realn.bam 82807079 BAM chimeric harmonized CPTAC3 76a953dc-eb3a-454e-b423-6127409d7c29 66b5c7c6c18c699e775f4d9a8764165b {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.RNA-Seq.chimeric.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.chimeric.gdc_realn.bam 110878787 BAM chimeric harmonized CPTAC3 606f76a5-5c6c-495c-9ba2-89da45139cd9 5b22d506270ef619bbc889f10dba5333 {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.RNA-Seq.genomic.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.genomic.gdc_realn.bam 8503007402 BAM genomic harmonized CPTAC3 5d0f1a8b-8ea6-42c8-a8a6-3fec8d799b54 c7bd4c0b245d998e30a4f17f03471157 {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.RNA-Seq.genomic.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.genomic.gdc_realn.bam 9410522822 BAM genomic harmonized CPTAC3 fab1da6f-bec2-4771-ac6a-aa94125a45aa c08c1669a23c4a65d0d26532a9c1edc7 {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.RNA-Seq.S18_L005_R1.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3825955251 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 c03373bb-4980-4327-af54-3ce878036954 d7e3f3a0d8b47b42be7fc4bf8162ce95 {"aliquot_tag": "ALQ_32aa0aac", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.RNA-Seq.S18_L005_R2.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4322051244 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 813ce019-4a21-49cc-8e0f-ea7b756a0098 9558daba2b3bbc005ae7c6d4f30ebadf {"aliquot_tag": "ALQ_32aa0aac", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.RNA-Seq.S80_L008_R1.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R1_001.fastq.gz 4068920168 FASTQ S80_L008_R1 submitted_unaligned CPTAC3 b8e3505e-43ad-4883-99b3-fc6b1db5630a c08ead3a0c40643e94ad47a9b1c13d5f {"aliquot_tag": "ALQ_8d9ab4cd", "sample": "S80", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.RNA-Seq.S80_L008_R2.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R2_001.fastq.gz 4363912702 FASTQ S80_L008_R2 submitted_unaligned CPTAC3 ceddd54a-d07f-49ea-a755-4a0ea3be8eb9 72553bf99b92d3ce5a4947d43ced57a4 {"aliquot_tag": "ALQ_8d9ab4cd", "sample": "S80", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.RNA-Seq.transcriptome.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.transcriptome.gdc_realn.bam 9882113482 BAM transcriptome harmonized CPTAC3 61ee7722-ac5f-4f76-bb7d-52a0952f92cc d1176d02be0ed0a3e893a20250875c61 {"aliquot_tag": "ALQ_8d9ab4cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.RNA-Seq.transcriptome.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.transcriptome.gdc_realn.bam 9549015173 BAM transcriptome harmonized CPTAC3 847a44f1-860d-4941-9fd3-61d0f01c40fa d3d6a89722b1dc122ef36e603603ab53 {"aliquot_tag": "ALQ_32aa0aac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.WGS.A C3N-00738 LUAD WGS tissue_normal CPT0112080009 CPT0112080009.WholeGenome.RP-1303.bam 56296939058 BAM submitted_aligned CPTAC3 93abc092-48ea-46af-8a32-89742efc592c 9847e9ba02595d0726f106e18de100a3 {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.WGS.A.hg38 C3N-00738 LUAD WGS tissue_normal CPT0112080009 643e6040-6a88-47a8-98d8-8ef4f1e2e9fb_wgs_gdc_realn.bam 81323277017 BAM harmonized CPTAC3 9dd20f55-cf21-4059-95bc-eb58c1c89df9 4b9506297f7837468003923415ed351d {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.WGS.N C3N-00738 LUAD WGS blood_normal CPT0112180002 CPT0112180002.WholeGenome.RP-1303.bam 67071194409 BAM submitted_aligned CPTAC3 a9a0dc76-964a-495b-be50-ca660cc027fa bdcddce910cc5c2e9b5c5c8b55b2b45d {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00738.WGS.N.hg38 C3N-00738 LUAD WGS blood_normal CPT0112180002 685d5364-aae3-4291-8104-7f616deea3ef_wgs_gdc_realn.bam 97963432308 BAM harmonized CPTAC3 30ae2920-9929-4fae-81b0-37460fc129af a511678b1f22b83f6b1c8c3c279e8caa {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00738.WGS.T C3N-00738 LUAD WGS tumor CPT0112060009 CPT0112060009.WholeGenome.RP-1303.bam 61677627882 BAM submitted_aligned CPTAC3 a56e7db7-a2bb-4c78-a11b-19e6e0d217af 639531b1de1529f226915198f1d4c1af {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.WGS.T.hg38 C3N-00738 LUAD WGS tumor CPT0112060009 3bd3461d-938c-44f1-96d1-232f0174c7cf_wgs_gdc_realn.bam 89858811900 BAM harmonized CPTAC3 afb602be-8c13-4f89-b5d8-ec5fdc56c661 5e603d55dcd3b67c4c15dd61c6c2c651 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.WXS.A C3N-00738 LUAD WXS tissue_normal CPT0112080009 CPT0112080009.WholeExome.RP-1303.bam 35997796274 BAM submitted_aligned CPTAC3 25aea754-f684-4859-8a96-9f7d584589e4 acb0d2737b4035e260fe52365521592d {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.WXS.A.hg38 C3N-00738 LUAD WXS tissue_normal CPT0112080009 643e6040-6a88-47a8-98d8-8ef4f1e2e9fb_wxs_gdc_realn.bam 48926508871 BAM harmonized CPTAC3 df972ff7-76a0-4703-a9cd-a24fdc232f5c 6f892331ed2ce9dcbecee068b5c75fcb {"aliquot_tag": "ALQ_1d25a95c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00738.WXS.N C3N-00738 LUAD WXS blood_normal CPT0112180002 CPT0112180002.WholeExome.RP-1303.bam 41373238340 BAM submitted_aligned CPTAC3 8be0de8d-ea56-453b-ba11-6226a2887c34 8d3f33b62d7dd872e9ca6a6ca15fb48d {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00738.WXS.N.hg38 C3N-00738 LUAD WXS blood_normal CPT0112180002 685d5364-aae3-4291-8104-7f616deea3ef_wxs_gdc_realn.bam 54454146539 BAM harmonized CPTAC3 f5d24087-c903-45d6-8b09-0507bec897a8 fee795d4a3629bba4381b5f291340676 {"aliquot_tag": "ALQ_41aba371", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00738.WXS.T C3N-00738 LUAD WXS tumor CPT0112060009 CPT0112060009.WholeExome.RP-1303.bam 30591379042 BAM submitted_aligned CPTAC3 2a8c471f-e475-43f2-937b-194e5d2d2747 1965de0357c952b992b774805682db38 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00738.WXS.T.hg38 C3N-00738 LUAD WXS tumor CPT0112060009 3bd3461d-938c-44f1-96d1-232f0174c7cf_wxs_gdc_realn.bam 42246554098 BAM harmonized CPTAC3 bb1b2e2f-49b2-4bf4-9c2b-bc78078baa74 9559b5b6c18a6db56e160f827951ec58 {"aliquot_tag": "ALQ_a215173d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.MethArray.Green.T C3N-00743 UCEC Methylation_Array tumor CPT0062940009 202163550072_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 86956549-3c21-4c29-9247-208b2af450eb f4998c94ee2b00ae9cec8bbbb7516e3a {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.MethArray.Red.T C3N-00743 UCEC Methylation_Array tumor CPT0062940009 202163550072_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 3da68fa3-5b1b-4583-8f80-638bb2adcf39 e06de1bfa1709dfe3d3542bc5aedabc3 {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.miRNA-Seq.S24_L005_R1.T C3N-00743 UCEC miRNA-Seq tumor CPT0062940006 181119_UNC31-K00269_0165_AH27WCBBXY_TCGGCA_S24_L005_R1_001.unaln.bam 185922173 BAM S24_L005_R1 submitted_unaligned CPTAC3 b8164afc-b7ee-463d-8645-7cf4340c561a 6ebaf6e4187b7efe152e7a794fab78ef {"aliquot_tag": "ALQ_72db155e", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.miRNA-Seq.T.hg38 C3N-00743 UCEC miRNA-Seq tumor CPT0062940006 b342de54-a3e0-49ff-be98-34d7a388ab3d_mirnaseq_gdc_realn.bam 205293911 BAM harmonized CPTAC3 96f02882-662c-4384-a49b-1eda0ad3da5b c231d9279185e816042ff1bf247a71a1 {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.chimeric.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.chimeric.gdc_realn.bam 117501617 BAM chimeric harmonized CPTAC3 2fe1decd-1e68-4f75-beb6-512a7ff83dab 4cb5928e51640791b427d3ef41f2a148 {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.chimeric.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.chimeric.gdc_realn.bam 105079699 BAM chimeric harmonized CPTAC3 340daef7-6fd0-4c61-9cb4-f60a61b10d48 97ef46a45e730add906e9412b7971288 {"aliquot_tag": "ALQ_294f6dfc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.genomic.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.genomic.gdc_realn.bam 14105392292 BAM genomic harmonized CPTAC3 4e63eef5-a08e-4b2b-930f-18cd2fbc783f d0fcaacef99a3aa2baf1a4e16466e71f {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.genomic.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.genomic.gdc_realn.bam 6839504753 BAM genomic harmonized CPTAC3 426dfcae-c093-4a16-95d3-e5a36919fb89 cb4d6fd63d2b5a77b73670c168081031 {"aliquot_tag": "ALQ_294f6dfc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.S11_R1.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R1_001.fastq.gz 4144866693 FASTQ S11_R1 submitted_unaligned CPTAC3 d6e94cf3-7548-4ce5-886a-495c49b561c5 289f872f629dbeb124f2cab43dea3cb5 {"aliquot_tag": "ALQ_294f6dfc", "sample": "S11", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.S11_R2.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R2_001.fastq.gz 4335783692 FASTQ S11_R2 submitted_unaligned CPTAC3 dfda38f9-55cf-444f-b70a-8e173508b37f 043b8688380691cb7313b05dd8f131f1 {"aliquot_tag": "ALQ_294f6dfc", "sample": "S11", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.S13_L004_R1.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 6290703955 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 a7609db0-2819-4dc0-9988-4a1323d15135 4707ee02fe01df226102dfedb02e04dd {"aliquot_tag": "ALQ_72db155e", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.S13_L004_R2.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 6842240946 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 b10f3be4-53ec-4526-96d5-050e3a0eebe7 fc77095ab4a11526e6f8f47405a176fc {"aliquot_tag": "ALQ_72db155e", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.transcriptome.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.transcriptome.gdc_realn.bam 14122899198 BAM transcriptome harmonized CPTAC3 caf7d055-7d4c-4516-a651-e6c294c8e6ac 793f1ef713c0e9c1697e77b862b7dbe8 {"aliquot_tag": "ALQ_72db155e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.RNA-Seq.transcriptome.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.transcriptome.gdc_realn.bam 4333795800 BAM transcriptome harmonized CPTAC3 c1cc08aa-e439-47ae-8efe-30c9bc11dd29 2a486feaafe8f1b94b83a78c4ee3d8e5 {"aliquot_tag": "ALQ_294f6dfc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.WGS.N C3N-00743 UCEC WGS blood_normal CPT0063060002 CPT0063060002.WholeGenome.RP-1303.bam 67426258189 BAM submitted_aligned CPTAC3 294659f1-3e67-4645-b3d4-39c93b22212c e930718b56e699025eb80b28a8e191e2 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00743.WGS.N.hg38 C3N-00743 UCEC WGS blood_normal CPT0063060002 5b71b4cf-7f14-42ec-bbe6-58842e3efd3f_gdc_realn.bam 101981112099 BAM harmonized CPTAC3 d062478a-4524-4ba8-b2d6-f50395fcc112 c116ee9850ac75ec3b6fb84b0b9eead0 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00743.WGS.T C3N-00743 UCEC WGS tumor CPT0062940009 CPT0062940009.WholeGenome.RP-1303.bam 78756011146 BAM submitted_aligned CPTAC3 91ae7713-8b1c-423a-9c27-f6ade0a04ce7 11c381770b066fe7278cf2ad27ba6f7c {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.WGS.T.hg38 C3N-00743 UCEC WGS tumor CPT0062940009 fb83df64-bb73-499c-a57a-9436e26aa093_gdc_realn.bam 123559620327 BAM harmonized CPTAC3 7a302498-b5e1-479b-898f-fd7bd524db94 c9f59e8a2f92837d46af100bac3022c8 {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.WXS.N C3N-00743 UCEC WXS blood_normal CPT0063060002 CPT0063060002.WholeExome.RP-1303.bam 32562596751 BAM submitted_aligned CPTAC3 32b28c13-d52e-44cb-8100-d212f1eaaa86 a3bb0314f00b7bbbfc3caae010d9c5e6 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00743.WXS.N.hg38 C3N-00743 UCEC WXS blood_normal CPT0063060002 5b71b4cf-7f14-42ec-bbe6-58842e3efd3f_gdc_realn.bam 44233086274 BAM harmonized CPTAC3 7b479f2e-cccc-475d-84c6-d54ad43a5966 a3355002d4fc19ef2b39b5e4a3058b80 {"aliquot_tag": "ALQ_8e0ed85b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00743.WXS.T C3N-00743 UCEC WXS tumor CPT0062940009 CPT0062940009.WholeExome.RP-1303.bam 46355677299 BAM submitted_aligned CPTAC3 7d110913-430e-457f-94e5-e2bd1af6cb90 0fc6287c8a3ba1387a74304b21a48e70 {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00743.WXS.T.hg38 C3N-00743 UCEC WXS tumor CPT0062940009 fb83df64-bb73-499c-a57a-9436e26aa093_gdc_realn.bam 63882362886 BAM harmonized CPTAC3 614a8780-9f61-476c-8d81-dbd4f18c0220 efcab2a2790a25c485f571a12192b46c {"aliquot_tag": "ALQ_e26408cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00750.MethArray.Green.T C3N-00750 UCEC Methylation_Array tumor CPT0265110006 203561620132_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 74beaa0b-dea9-4895-be9f-d6826ea6b6ce defdf64e4a188ecf87a089471b755f81 {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.MethArray.Red.T C3N-00750 UCEC Methylation_Array tumor CPT0265110006 203561620132_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 c0ea9fc7-b9e0-45bd-80f1-f645b5fbed31 0c60edd9936abbfd6a03869447704599 {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.miRNA-Seq.S10_L001_R1.T C3N-00750 UCEC miRNA-Seq tumor CPT0265110009 190508_UNC31-K00269_0215_BH7FYKBBXY_TAGCTT_S10_L001_R1_001.unaln.bam 202438751 BAM S10_L001_R1 submitted_unaligned CPTAC3 27bb27a9-312d-4034-b420-db39f2b9e801 fc4535813856217de53ca199ce2f9562 {"aliquot_tag": "ALQ_2d8613da", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.miRNA-Seq.T.hg38 C3N-00750 UCEC miRNA-Seq tumor CPT0265110009 3916a8ce-6d24-416e-b429-64cfb761e3cd_mirnaseq_gdc_realn.bam 223504697 BAM harmonized CPTAC3 feb68dee-1b33-4b0d-82df-b96a23422841 efc6f37ec560f2d2813f41d6559f6b53 {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.chimeric.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.chimeric.gdc_realn.bam 35878282 BAM chimeric harmonized CPTAC3 72bd5b77-0e3b-41c1-ab03-5221d9723c6c 50b8965431fc795ac8a713438f95ac6e {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.chimeric.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.chimeric.gdc_realn.bam 279812419 BAM chimeric harmonized CPTAC3 862c902c-ef82-451c-aa6c-fcd42bdcaf9e 52604b458cc82f9a2efc7b39790d8923 {"aliquot_tag": "ALQ_ebbd1498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.genomic.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.genomic.gdc_realn.bam 9265729111 BAM genomic harmonized CPTAC3 accf95b6-24b6-4c45-b0b6-5b6f4664518a 34b30c2bed64126c21d9570e5efe7f3b {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.genomic.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.genomic.gdc_realn.bam 14600195628 BAM genomic harmonized CPTAC3 c53f4c84-8374-4a9e-a8b4-331ee64d522a 1d5f6fb69db6066dd2fe595b0b6d13e0 {"aliquot_tag": "ALQ_ebbd1498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.S18_L005_R1.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R1_001.fastq.gz 4455470146 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 107e045d-80db-4cae-ae65-2d9fd8ed9a37 c37e3ca7e528ea6f7a85e19ab8a4f1c9 {"aliquot_tag": "ALQ_2d8613da", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.S18_L005_R2.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R2_001.fastq.gz 4965615771 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 f53a602d-e6ab-4c89-af46-18c369e43fd9 15cb7b4ab88a6e4d134f5ff933c72431 {"aliquot_tag": "ALQ_2d8613da", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.S22_R1.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R1_001.fastq.gz 8555561468 FASTQ S22_R1 submitted_unaligned CPTAC3 a45e880b-ae16-452b-b804-ca208328a10f 320bebb8c44a07b3e944a9a0a4d04809 {"aliquot_tag": "ALQ_ebbd1498", "sample": "S22", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.S22_R2.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R2_001.fastq.gz 8874799007 FASTQ S22_R2 submitted_unaligned CPTAC3 feacb950-f77b-4e6b-8aba-bb5d6e07ae9f cb8f23778c7f7d631bf66e512f29d8b9 {"aliquot_tag": "ALQ_ebbd1498", "sample": "S22", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.transcriptome.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.transcriptome.gdc_realn.bam 13298999674 BAM transcriptome harmonized CPTAC3 4255281f-842a-4d8a-9280-1e12f6bc8b62 96875250dd1bbd2dfc4278eb11dbfcc0 {"aliquot_tag": "ALQ_2d8613da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.RNA-Seq.transcriptome.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.transcriptome.gdc_realn.bam 9707867162 BAM transcriptome harmonized CPTAC3 759aff90-5c21-4b21-b771-1da272cdd741 8a11f16c2158a4a406da6d46d3136263 {"aliquot_tag": "ALQ_ebbd1498", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.WGS.N C3N-00750 UCEC WGS blood_normal CPT0264020002 CPT0264020002.WholeGenome.RP-1303.bam 70759765995 BAM submitted_aligned CPTAC3 1ae69857-824b-43b4-b35e-ce5f16fa7ab8 2ad79b771809527860b689cc9a7fd2fb {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00750.WGS.N.hg38 C3N-00750 UCEC WGS blood_normal CPT0264020002 6b65cbd6-63f7-4874-84de-9b976d0b7719_wgs_gdc_realn.bam 105702267632 BAM harmonized CPTAC3 a00793a7-3546-43bf-8c3f-0c752a8a9d8f 0cf38b0d594706c05eef71fe5747bf21 {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00750.WGS.T C3N-00750 UCEC WGS tumor CPT0265110006 CPT0265110006.WholeGenome.RP-1303.bam 75090284608 BAM submitted_aligned CPTAC3 189cd0d8-aed4-462f-9f1d-25d9ca182829 c1026cfe1e579bf466c14d2d302f955c {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.WGS.T.hg38 C3N-00750 UCEC WGS tumor CPT0265110006 c13f008a-2028-44b7-bf94-22ba6ee3e0e7_wgs_gdc_realn.bam 111289296828 BAM harmonized CPTAC3 9b6fb0f0-8515-49f3-ba3e-74ff87e393b3 811a6d058952e5d2910633b77c7b3532 {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.WXS.N C3N-00750 UCEC WXS blood_normal CPT0264020002 CPT0264020002.WholeExome.RP-1303.bam 27306296823 BAM submitted_aligned CPTAC3 86b28bf4-a192-43b2-afb7-e1d768007ed4 94da76776bd2a322de729c1bb4b1974b {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00750.WXS.N.hg38 C3N-00750 UCEC WXS blood_normal CPT0264020002 6b65cbd6-63f7-4874-84de-9b976d0b7719_wxs_gdc_realn.bam 38220563385 BAM harmonized CPTAC3 6def37c9-462c-481d-bcb6-c85664a520d0 025e5fed900969762538b3f53f681ebc {"aliquot_tag": "ALQ_90df6893", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00750.WXS.T C3N-00750 UCEC WXS tumor CPT0265110006 CPT0265110006.WholeExome.RP-1303.bam 25407170384 BAM submitted_aligned CPTAC3 bd8d9247-f502-4125-ae1b-38bec96d9d61 9390ccb94bcbf43a24b68cc068b88b3c {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00750.WXS.T.hg38 C3N-00750 UCEC WXS tumor CPT0265110006 c13f008a-2028-44b7-bf94-22ba6ee3e0e7_wxs_gdc_realn.bam 35655485056 BAM harmonized CPTAC3 eb61406c-201e-4c5f-b8e6-92b93a96680c 1812f5d4bc557e0a0f562c2ad924a6ba {"aliquot_tag": "ALQ_bd390e4b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.MethArray.Green.T C3N-00753 UCEC Methylation_Array tumor CPT0129640006 203220070100_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f3dd98e5-8ded-4692-86c8-c3d88e8258fc fd44b84d9081c87a084a085c2eb70282 {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.MethArray.Red.T C3N-00753 UCEC Methylation_Array tumor CPT0129640006 203220070100_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 68f56008-9831-4ee1-be18-b7e30d3452e6 955af45b8bfbeb481ee09b3e35c7f863 {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.miRNA-Seq.S20_L004_R1.T C3N-00753 UCEC miRNA-Seq tumor CPT0129640009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGGCC_S20_L004_R1_001.unaln.bam 216875172 BAM S20_L004_R1 submitted_unaligned CPTAC3 70c7b5e7-0eab-421f-86ed-612ce4c209c5 339941a92410f46ce3dd40324787980b {"aliquot_tag": "ALQ_8204f459", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.miRNA-Seq.T.hg38 C3N-00753 UCEC miRNA-Seq tumor CPT0129640009 204e951d-6c75-4687-856b-6460f194697c_mirnaseq_gdc_realn.bam 244274307 BAM harmonized CPTAC3 d80fe401-27a5-42c3-b267-3f8e4bc66da1 e83002e01f37ee96c3d68935efd9f720 {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.chimeric.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.chimeric.gdc_realn.bam 104049847 BAM chimeric harmonized CPTAC3 4bbfde5f-34fc-4e3e-ae87-db11786ba85c 0ed01ded1e2dda096495e10b3020768c {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.chimeric.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.chimeric.gdc_realn.bam 49102898 BAM chimeric harmonized CPTAC3 5ea035db-50a3-4739-bf35-2ab9dc77a2e6 b38cba4a1513f076232b734bd4fa4c39 {"aliquot_tag": "ALQ_492f916a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.genomic.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.genomic.gdc_realn.bam 9077381414 BAM genomic harmonized CPTAC3 82c25c09-23a3-4df9-b648-2896974bfd2d 7fcfb5af8124c83d33ecda56dff0e729 {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.genomic.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.genomic.gdc_realn.bam 5503520862 BAM genomic harmonized CPTAC3 bc53f6e2-e18b-4c48-a530-557b2be3dbec 550f1f3f91b15c326a2d3052275a03bf {"aliquot_tag": "ALQ_492f916a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.S15_L005_R1.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R1_001.fastq.gz 3991757824 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 24a62044-5b9f-4f12-83e7-ef19d3e94edd d17587a3e9b582ad38d8463966f03e22 {"aliquot_tag": "ALQ_8204f459", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.S15_L005_R2.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R2_001.fastq.gz 4428498913 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 2b42b14f-d176-4c12-840e-cf8a57755bd1 afbc9cfd1740a4d25b47c3d37edbe603 {"aliquot_tag": "ALQ_8204f459", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.S23_R1.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R1_001.fastq.gz 2934024253 FASTQ S23_R1 submitted_unaligned CPTAC3 7dfc318c-40b8-4d10-8df0-b4745d705e0f bdc9c6135d2bf2850f8f6c7a5d2a34d1 {"aliquot_tag": "ALQ_492f916a", "sample": "S23", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.S23_R2.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R2_001.fastq.gz 3028231506 FASTQ S23_R2 submitted_unaligned CPTAC3 30e6eba4-380f-4da8-a254-540f61540ae9 da79c9354f9653d8c37bac307dc23f75 {"aliquot_tag": "ALQ_492f916a", "sample": "S23", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.transcriptome.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.transcriptome.gdc_realn.bam 9933082228 BAM transcriptome harmonized CPTAC3 8fcd2b6d-7ced-492b-bd24-dae4cf1c9dd6 6f21388866dcbee51a46b86306d1e563 {"aliquot_tag": "ALQ_8204f459", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.RNA-Seq.transcriptome.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.transcriptome.gdc_realn.bam 2787027058 BAM transcriptome harmonized CPTAC3 1afb82a6-bbe6-4ef8-896d-acb09e988e04 bff90d6d59b5b56fcd61dccc369db402 {"aliquot_tag": "ALQ_492f916a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.WGS.N C3N-00753 UCEC WGS blood_normal CPT0130880002 CPT0130880002.WholeGenome.RP-1303.bam 53554795096 BAM submitted_aligned CPTAC3 653efd27-f37d-4770-82d9-e32487eaccb6 920036b0de0150f61aa1350e2fb8e071 {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00753.WGS.N.hg38 C3N-00753 UCEC WGS blood_normal CPT0130880002 6048ef28-8763-4680-8859-98aa1fa77e6d_wgs_gdc_realn.bam 78976989829 BAM harmonized CPTAC3 5da22ef3-4ad9-4f2e-95c9-39579c1314e5 e0974def125fc1f3c57ec036d5fbba92 {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00753.WGS.T C3N-00753 UCEC WGS tumor CPT0129640006 CPT0129640006.WholeGenome.RP-1303.bam 53082823138 BAM submitted_aligned CPTAC3 60100289-0fa1-41bc-ad67-03261dadc4e5 c7b13a585ec7e423646d98479e30edfc {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.WGS.T.hg38 C3N-00753 UCEC WGS tumor CPT0129640006 abe4f89f-a2e9-4e8b-ad13-1b54aeb77d28_wgs_gdc_realn.bam 78509096285 BAM harmonized CPTAC3 6c7e86ea-8dff-4b31-a34a-8d650b90f587 28b46db8d8ad4134ace0ff407504c17e {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.WXS.N C3N-00753 UCEC WXS blood_normal CPT0130880002 CPT0130880002.WholeExome.RP-1303.bam 26240634578 BAM submitted_aligned CPTAC3 679c5e42-9e4c-43ff-a6bc-470c69d744bb c8968c3779bb7de3c7d9be445088670c {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00753.WXS.N.hg38 C3N-00753 UCEC WXS blood_normal CPT0130880002 6048ef28-8763-4680-8859-98aa1fa77e6d_wxs_gdc_realn.bam 36403338657 BAM harmonized CPTAC3 df470964-f417-4dea-a4e0-69876e3a57a7 e086aeb752ba3931720b5f176a6bf8b9 {"aliquot_tag": "ALQ_b31ee4ed", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00753.WXS.T C3N-00753 UCEC WXS tumor CPT0129640006 CPT0129640006.WholeExome.RP-1303.bam 25472059774 BAM submitted_aligned CPTAC3 c32a3d61-6d9c-48f8-a374-5009a2f1c3d0 f3c94586f99369d6cb6b53f4e90510eb {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00753.WXS.T.hg38 C3N-00753 UCEC WXS tumor CPT0129640006 abe4f89f-a2e9-4e8b-ad13-1b54aeb77d28_wxs_gdc_realn.bam 35353335013 BAM harmonized CPTAC3 ad548956-0155-4dc5-aabc-9d3383f31631 1de06b8a5d35316cba1a3e15003a5720 {"aliquot_tag": "ALQ_12bbe9c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.MethArray.Green.T C3N-00755 UCEC Methylation_Array tumor CPT0129520007 203219670180_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d933123c-2017-439f-80df-e036bb62e1d0 7daa864661720f1f400c81ef67da8561 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.MethArray.Red.T C3N-00755 UCEC Methylation_Array tumor CPT0129520007 203219670180_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 8f12137a-9c0c-4cc3-bf37-23851c93e4c8 88d5686eb712858268662ca3ad7a131e {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.miRNA-Seq.S39_L005_R1.T C3N-00755 UCEC miRNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTATAC_S39_L005_R1_001.unaln.bam 257132706 BAM S39_L005_R1 submitted_unaligned CPTAC3 8c7256e1-6629-4353-932d-5d97e8cc10ca e1ece2b9460c99f3657f93db04a272d4 {"aliquot_tag": "ALQ_eb17fab2", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.miRNA-Seq.T.hg38 C3N-00755 UCEC miRNA-Seq tumor CPT0129520010 d3d92a93-517e-4aca-8b01-ee62438e1cda_mirnaseq_gdc_realn.bam 279480046 BAM harmonized CPTAC3 90319517-f376-47a4-9c8d-c7eee89d8193 8dfd0ef4918c757d480824f98db5c03d {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.chimeric.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.chimeric.gdc_realn.bam 36093888 BAM chimeric harmonized CPTAC3 d41a8e62-4b4c-459a-b16c-3fcb9030234f 303a634b87ddc6cc80c67b92574403a0 {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.chimeric.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.chimeric.gdc_realn.bam 182241164 BAM chimeric harmonized CPTAC3 d197ff5a-1b83-4086-89b5-293fcdb6fffa 5f0f20ca277e207a359177307f6526c8 {"aliquot_tag": "ALQ_708b5da5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.genomic.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.genomic.gdc_realn.bam 9897478317 BAM genomic harmonized CPTAC3 eab81ffc-e6b2-44ca-aa8e-9722fa58465d 99ba4a00429c528963bb6f708b99ff8a {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.genomic.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.genomic.gdc_realn.bam 10748714942 BAM genomic harmonized CPTAC3 66a24825-e4bc-45ac-b68d-033ef06675a9 aede56ff2136be8c91317389bfdbba61 {"aliquot_tag": "ALQ_708b5da5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.S17_L005_R1.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4307243615 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 0066fe67-28d9-425d-aaca-25e07d3c7a1f d4edf5c61d27ab092cf2057b790203ff {"aliquot_tag": "ALQ_eb17fab2", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.S17_L005_R2.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4444988806 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 d71ae3c9-74e9-4b53-ae49-72b0ebdc847e cbc94c8c581684695c4d996913740998 {"aliquot_tag": "ALQ_eb17fab2", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.S54_R1.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R1_001.fastq.gz 6861879550 FASTQ S54_R1 submitted_unaligned CPTAC3 5dd45ab8-77fa-4639-bb2a-920b137fdada 30ac77da218859c433da37f6145aaad7 {"aliquot_tag": "ALQ_708b5da5", "sample": "S54", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.S54_R2.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R2_001.fastq.gz 7165484062 FASTQ S54_R2 submitted_unaligned CPTAC3 2f81b1d0-c714-4344-a61b-bf544ff2f37f aca96c504b3e3eca7b56443840e3af66 {"aliquot_tag": "ALQ_708b5da5", "sample": "S54", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.transcriptome.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.transcriptome.gdc_realn.bam 9849538258 BAM transcriptome harmonized CPTAC3 d74356b6-3e27-4065-8892-9eacf6b521e2 73085c85eb7f6017f1fbee0ff24ea29b {"aliquot_tag": "ALQ_eb17fab2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.RNA-Seq.transcriptome.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.transcriptome.gdc_realn.bam 6803385711 BAM transcriptome harmonized CPTAC3 119f76dc-26a3-4991-8fb9-78d006de8b47 2cbf5491bd1bd3b23d5a13f8e1e34c91 {"aliquot_tag": "ALQ_708b5da5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.WGS.N C3N-00755 UCEC WGS blood_normal CPT0130860002 CPT0130860002.WholeGenome.RP-1303.bam 54288114855 BAM submitted_aligned CPTAC3 b2856f03-4bd6-42d4-aaca-55b88baf25be d5bcf998c693cbb6a9336f96280cccdd {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00755.WGS.N.hg38 C3N-00755 UCEC WGS blood_normal CPT0130860002 7addbadb-d490-4771-9b90-d1f15f80eae2_wgs_gdc_realn.bam 78513921229 BAM harmonized CPTAC3 23ce58b2-6712-4212-abd4-5227785a62db 9e4b00fb0e28a93e6cd6ddb46624bbda {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00755.WGS.T C3N-00755 UCEC WGS tumor CPT0129520007 CPT0129520007.WholeGenome.RP-1303.bam 61723557374 BAM submitted_aligned CPTAC3 9b92c9ac-b1ab-4d34-841e-0290b3cfd4b0 1c18ef8fe77179698a239aea578ae695 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.WGS.T.hg38 C3N-00755 UCEC WGS tumor CPT0129520007 f66073a0-eed8-4c4a-9bea-bec64143e85f_wgs_gdc_realn.bam 91083612740 BAM harmonized CPTAC3 ff1eef3d-fdad-4513-9baa-6217e5ca3f67 f788a7c3420ea560d767e6912ffb43bb {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.WXS.N C3N-00755 UCEC WXS blood_normal CPT0130860002 CPT0130860002.WholeExome.RP-1303.bam 23468495532 BAM submitted_aligned CPTAC3 bf192af5-43f8-4fb0-a883-89543148007a 8eb78e44ea16c0fd7432c8f70c67d565 {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00755.WXS.N.hg38 C3N-00755 UCEC WXS blood_normal CPT0130860002 7addbadb-d490-4771-9b90-d1f15f80eae2_wxs_gdc_realn.bam 32067076912 BAM harmonized CPTAC3 6c2151b8-4811-490a-a407-a711d18a9915 538bbf56e67305ef259ff31980629b41 {"aliquot_tag": "ALQ_c2e5a8c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00755.WXS.T C3N-00755 UCEC WXS tumor CPT0129520007 CPT0129520007.WholeExome.RP-1303.bam 29262548859 BAM submitted_aligned CPTAC3 a5bb098c-a758-48c8-84a2-4332d5d53e66 c367bfe2cde22282c211bab1b7642335 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00755.WXS.T.hg38 C3N-00755 UCEC WXS tumor CPT0129520007 f66073a0-eed8-4c4a-9bea-bec64143e85f_wxs_gdc_realn.bam 40261174717 BAM harmonized CPTAC3 b66b98fd-777b-4232-9242-6313d7d18753 c67fe3f93411c6e1f913331cf13e1ea6 {"aliquot_tag": "ALQ_6c685e50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00822.MethArray.Green.T C3N-00822 HNSCC Methylation_Array tumor CPT0087820009 202234370120_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e997b289-2512-4644-9c3b-7fcd56addb6a 69740b6d1b7116bb43970d2301e34059 {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.MethArray.Red.T C3N-00822 HNSCC Methylation_Array tumor CPT0087820009 202234370120_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 a87018cc-0e3d-4281-a1fb-8ef1879e809e fddb211394c9302a0576c0906d6206cb {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.miRNA-Seq.S25_L002_R1.T C3N-00822 HNSCC miRNA-Seq tumor CPT0087820006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTATAC_S25_L002_R1_001.unaln.bam 286398033 BAM S25_L002_R1 submitted_unaligned CPTAC3 f286101a-047d-4b3c-a433-2ee2f65ca210 816ddb41a8ad8366ab81011f64695c27 {"aliquot_tag": "ALQ_71750ece", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.miRNA-Seq.T.hg38 C3N-00822 HNSCC miRNA-Seq tumor CPT0087820006 a5bf2760-831c-4f49-9e7e-1df33e2eacc7_mirnaseq_gdc_realn.bam 324377707 BAM harmonized CPTAC3 df88b4c6-8c88-470b-8594-45383d9aa73e e2e852760c21b5eef15dde75bbf229ad {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.chimeric.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.chimeric.gdc_realn.bam 43909671 BAM chimeric harmonized CPTAC3 d872684d-ae3b-48f3-ac81-71f923f9a432 32d45b793170254c7a2f5acbac652b6d {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.chimeric.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.chimeric.gdc_realn.bam 230735291 BAM chimeric harmonized CPTAC3 9ba92479-8056-46d4-8de6-4dc7faee604a 91f8cd4dc577d2e09ac2f020c5a46d88 {"aliquot_tag": "ALQ_fc37568d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.genomic.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.genomic.gdc_realn.bam 11032450446 BAM genomic harmonized CPTAC3 4c994f0a-6c6e-4452-8957-5d512503860f 0c80ab46d98fbca58cf1f3e66f24aa33 {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.genomic.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.genomic.gdc_realn.bam 13914260519 BAM genomic harmonized CPTAC3 4f8e8e0f-7e70-40ab-996b-85f8f005e127 9a1e3a893d3dc192b68968052a153446 {"aliquot_tag": "ALQ_fc37568d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.S21_L008_R1.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R1_001.fastq.gz 4201093604 FASTQ S21_L008_R1 submitted_unaligned CPTAC3 0301a383-da2d-49b6-93cd-647d466b371f f60a823d5cff06ab6f77f722c581a85e {"aliquot_tag": "ALQ_71750ece", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.S21_L008_R2.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R2_001.fastq.gz 4662070979 FASTQ S21_L008_R2 submitted_unaligned CPTAC3 81e003f3-cf09-489b-87eb-323cf1737646 928337966b9650410f43fa6b9fd28cdf {"aliquot_tag": "ALQ_71750ece", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.S36_R1.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R1_001.fastq.gz 8018982990 FASTQ S36_R1 submitted_unaligned CPTAC3 a6b52759-1ad2-4131-a5cc-e8a81588e376 d726d6a4f0ecc18cb6ab513ea294fc99 {"aliquot_tag": "ALQ_fc37568d", "sample": "S36", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.S36_R2.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R2_001.fastq.gz 8383519746 FASTQ S36_R2 submitted_unaligned CPTAC3 e5b128f4-32b8-4584-9cb3-b29ca487edd8 65296debc08402fa64c0edf1ab3596fa {"aliquot_tag": "ALQ_fc37568d", "sample": "S36", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.transcriptome.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.transcriptome.gdc_realn.bam 10382448303 BAM transcriptome harmonized CPTAC3 958a3976-5753-4dc1-8ec9-8d4605407e8b 298519fa596131f204c516b91118d344 {"aliquot_tag": "ALQ_71750ece", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.RNA-Seq.transcriptome.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.transcriptome.gdc_realn.bam 7108562522 BAM transcriptome harmonized CPTAC3 75a736da-7064-4381-8c45-2e7a098ff63c 635ff472fe07bf53b1dd3e65bc5d1bdd {"aliquot_tag": "ALQ_fc37568d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.WGS.N C3N-00822 HNSCC WGS blood_normal CPT0087880002 CPT0087880002.WholeGenome.RP-1303.bam 63513539724 BAM submitted_aligned CPTAC3 19230fb5-9bde-4cc8-9992-db89e4fe6c53 187bcd20ee4b1c217efb0d86ad3d1374 {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00822.WGS.N.hg38 C3N-00822 HNSCC WGS blood_normal CPT0087880002 e2aaffe0-cd97-4b93-8e61-de5f324f901c_wgs_gdc_realn.bam 93023555279 BAM harmonized CPTAC3 07016237-407b-47ec-bac2-8c0b47ec2217 b058e1f94fe2db824cf62af2776b4c52 {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00822.WGS.T C3N-00822 HNSCC WGS tumor CPT0087820009 CPT0087820009.WholeGenome.RP-1303.bam 61090064114 BAM submitted_aligned CPTAC3 c0f6d127-d65b-4806-9f63-498b78e37aed 40c9b31f7e90a51d13c938ce427e50eb {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.WGS.T.hg38 C3N-00822 HNSCC WGS tumor CPT0087820009 4114196f-7a4a-4bca-acf8-d8829c639934_wgs_gdc_realn.bam 91725919612 BAM harmonized CPTAC3 acb58809-b6e0-4fce-bb66-d1cfce8975ef b398388abe734039233ea74cd2a18da8 {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.WXS.N C3N-00822 HNSCC WXS blood_normal CPT0087880002 CPT0087880002.WholeExome.RP-1303.bam 32354650367 BAM submitted_aligned CPTAC3 5e7c9a95-0af8-44f6-bc5b-e52dd827ccd8 d84b0d12e7d47a559d87aab260ebf39a {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00822.WXS.N.hg38 C3N-00822 HNSCC WXS blood_normal CPT0087880002 e2aaffe0-cd97-4b93-8e61-de5f324f901c_wxs_gdc_realn.bam 44256457633 BAM harmonized CPTAC3 397a73ac-71d1-4975-bf7f-af4b2c4f9d11 ee4a711827b21eaebc929560f8dd84af {"aliquot_tag": "ALQ_3ca8d276", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00822.WXS.T C3N-00822 HNSCC WXS tumor CPT0087820009 CPT0087820009.WholeExome.RP-1303.bam 31151026113 BAM submitted_aligned CPTAC3 4458b121-63f3-48b8-ae9c-c93a7d775541 111e598792992cd5442062688e5dabe9 {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00822.WXS.T.hg38 C3N-00822 HNSCC WXS tumor CPT0087820009 4114196f-7a4a-4bca-acf8-d8829c639934_wxs_gdc_realn.bam 42532173149 BAM harmonized CPTAC3 a4b184bb-1d90-4f32-b16f-6bde08fcaf6b c01e45d9dfc8cc9e9bc881d025038e3b {"aliquot_tag": "ALQ_e1ca135f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.MethArray.Green.T C3N-00825 HNSCC Methylation_Array tumor CPT0094280010 202234380094_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 e557e369-ed7a-4f8a-8353-5583ae455f7f be7f322e9382aecbc50d3e1fa20e12f9 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.MethArray.Red.T C3N-00825 HNSCC Methylation_Array tumor CPT0094280010 202234380094_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 b40da398-b2e2-4441-8512-3f29806a22de 2f20cb963ecc6845a7c0297de1b1e183 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.miRNA-Seq.S35_L007_R1.T C3N-00825 HNSCC miRNA-Seq tumor CPT0094280007 180828_UNC32-K00270_0112_AHWTLNBBXX_CAACTA_S35_L007_R1_001.unaln.bam 229966370 BAM S35_L007_R1 submitted_unaligned CPTAC3 1687253f-8a1a-4041-9382-b6e7f17ccf3d 5458a6f559a665b47d93a1ea50bc36b8 {"aliquot_tag": "ALQ_101b1f9c", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.miRNA-Seq.T.hg38 C3N-00825 HNSCC miRNA-Seq tumor CPT0094280007 73ad72e3-88fa-49f4-86ed-ce0823b7c590_mirnaseq_gdc_realn.bam 252902109 BAM harmonized CPTAC3 7a536e33-a545-454c-9d31-5215805377c5 917b9be818504fde29cf001dd0851bfa {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.chimeric.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.chimeric.gdc_realn.bam 41378396 BAM chimeric harmonized CPTAC3 4e103405-782c-43a1-8f49-c1c2486631d1 7ac352554bcebd6191513225e51d7acd {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.chimeric.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.chimeric.gdc_realn.bam 145958620 BAM chimeric harmonized CPTAC3 d52ba916-373a-4ba5-9aaa-b6ebf1320dee 94bcb8604cb016d73b3af600c8654c46 {"aliquot_tag": "ALQ_96e25724", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.genomic.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.genomic.gdc_realn.bam 9322692093 BAM genomic harmonized CPTAC3 46470433-1632-4d3d-b477-a4297f600127 6a69c30205cdec0c073ec46a77dc4b9e {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.genomic.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.genomic.gdc_realn.bam 7523828078 BAM genomic harmonized CPTAC3 dd024423-f0ca-4cd0-b543-68c530f1f15e d900f7f84c53ddf69d8903d383ea2c0c {"aliquot_tag": "ALQ_96e25724", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.S42_R1.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R1_001.fastq.gz 4291323722 FASTQ S42_R1 submitted_unaligned CPTAC3 a20072a8-fd7a-4ba4-b9f3-82048e73dc46 205b1fd8644686d6fed9663f146d68e6 {"aliquot_tag": "ALQ_96e25724", "sample": "S42", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.S42_R2.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R2_001.fastq.gz 4429670599 FASTQ S42_R2 submitted_unaligned CPTAC3 4edef0a6-fd5a-48f3-92ea-a74fd2acae33 3b6e1f32967666ea9e5732fe814b7ec1 {"aliquot_tag": "ALQ_96e25724", "sample": "S42", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.S5_L003_R1.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R1_001.fastq.gz 4033477916 FASTQ S5_L003_R1 submitted_unaligned CPTAC3 fec68aaa-b9e0-4959-bc51-76f6ecdcc4b7 13b129c700a02ada4d91e35c8f0f0d22 {"aliquot_tag": "ALQ_101b1f9c", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.S5_L003_R2.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R2_001.fastq.gz 4409765570 FASTQ S5_L003_R2 submitted_unaligned CPTAC3 00992899-0948-473e-99dc-8ef0730087a6 78446d6458206dbf9c28ca6d8fadc7b7 {"aliquot_tag": "ALQ_101b1f9c", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.transcriptome.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.transcriptome.gdc_realn.bam 11378185713 BAM transcriptome harmonized CPTAC3 57b3840e-165c-417e-b604-c1e1d7280026 1ee258fd39339ade7bb7058a552ee19a {"aliquot_tag": "ALQ_101b1f9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.RNA-Seq.transcriptome.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.transcriptome.gdc_realn.bam 5807482319 BAM transcriptome harmonized CPTAC3 cdd25743-4ec1-431c-bb48-e8018903f6d8 eaea6121d9b2dde77f88950fb67ea33d {"aliquot_tag": "ALQ_96e25724", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.WGS.N C3N-00825 HNSCC WGS blood_normal CPT0094340002 CPT0094340002.WholeGenome.RP-1303.bam 68523444995 BAM submitted_aligned CPTAC3 315633b1-e3ed-440b-8af2-183edc15fe43 fe90cfaefec664a3ef4f4cce4cc7852c {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00825.WGS.N.hg38 C3N-00825 HNSCC WGS blood_normal CPT0094340002 052c318a-0d9e-4bea-97b1-7f8bab5866f7_wgs_gdc_realn.bam 101073711752 BAM harmonized CPTAC3 5e0a1c4c-c474-4682-8366-28c24fa656fc 2fc2fb64dd48d4ae0001e355caecc902 {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00825.WGS.T C3N-00825 HNSCC WGS tumor CPT0094280010 CPT0094280010.WholeGenome.RP-1303.bam 65472001467 BAM submitted_aligned CPTAC3 c6ccb016-32d3-485b-9129-280b4604b42e 275d640beeff25445618fb90d8fae42b {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.WGS.T.hg38 C3N-00825 HNSCC WGS tumor CPT0094280010 9a3c5972-f65d-434b-a425-b815f5c1ade7_wgs_gdc_realn.bam 96050295332 BAM harmonized CPTAC3 c0f7dc08-3d4a-4f13-a765-7960ce3c933f 1d01290ff44a78485a9fe526a5c7dce6 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.WXS.N C3N-00825 HNSCC WXS blood_normal CPT0094340002 CPT0094340002.WholeExome.RP-1303.bam 32626713355 BAM submitted_aligned CPTAC3 1aa3a989-cefc-4bd4-948f-7a5b24f80561 26b3dce6d447bfbbcbd52d3e2ea1a9ed {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00825.WXS.N.hg38 C3N-00825 HNSCC WXS blood_normal CPT0094340002 052c318a-0d9e-4bea-97b1-7f8bab5866f7_wxs_gdc_realn.bam 44213676914 BAM harmonized CPTAC3 318a7c21-57fa-45cb-90c0-d9e37bdbbb00 987a837fa13656541ca4ca32c1b35a1c {"aliquot_tag": "ALQ_6eddd5b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00825.WXS.T C3N-00825 HNSCC WXS tumor CPT0094280010 CPT0094280010.WholeExome.RP-1303.bam 36307109803 BAM submitted_aligned CPTAC3 e3886fd3-dbe9-4ad9-851f-6d006ecd6044 634c81c8859449e7429e6b4225ede125 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00825.WXS.T.hg38 C3N-00825 HNSCC WXS tumor CPT0094280010 9a3c5972-f65d-434b-a425-b815f5c1ade7_wxs_gdc_realn.bam 49958441898 BAM harmonized CPTAC3 e3ce27a4-2fec-4cb0-acbe-06cb88f84bd7 2bf8c23b23a3bc1b594fb00590a32041 {"aliquot_tag": "ALQ_9764bb7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.MethArray.Green.T C3N-00828 HNSCC Methylation_Array tumor CPT0013130009 202178770143_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 cc44f42e-acfb-4f61-8043-b1158d75271b bb64b903e6e74de38679e408dc0fcf83 {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.MethArray.Red.T C3N-00828 HNSCC Methylation_Array tumor CPT0013130009 202178770143_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 f74a1906-54fb-4e7d-8c98-b32324a42596 bec0a9bf17d1f90c98d5d0fd16fe1d12 {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.miRNA-Seq.S40_L002_R1.T C3N-00828 HNSCC miRNA-Seq tumor CPT0013130006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACGAT_S40_L002_R1_001.unaln.bam 176350387 BAM S40_L002_R1 submitted_unaligned CPTAC3 0cc2e7bb-5623-4f4a-b26e-8502e3ccb209 5363cf42241d8c5651ef304e83da1214 {"aliquot_tag": "ALQ_801a498e", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.miRNA-Seq.T.hg38 C3N-00828 HNSCC miRNA-Seq tumor CPT0013130006 a8395f44-31fd-4eb5-a1e1-7e03d39e8804_mirnaseq_gdc_realn.bam 194356167 BAM harmonized CPTAC3 b25bbb91-e985-4354-9f0a-eb9de5c064b7 6c3ec6fc1d6a8b9e29df748f5a5b43d2 {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.RNA-Seq.chimeric.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.chimeric.gdc_realn.bam 60224941 BAM chimeric harmonized CPTAC3 4b79882a-b828-4733-9baf-72b63dfa5061 617e394c3f0b3e1d6040017b6559e4b8 {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.RNA-Seq.genomic.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.genomic.gdc_realn.bam 8354386266 BAM genomic harmonized CPTAC3 e3e6e08f-4154-41be-a0c1-8d12bccb72b0 584369e98418e2ddded00078a28749f5 {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.RNA-Seq.S2_L006_R1.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R1_001.fastq.gz 3541810555 FASTQ S2_L006_R1 submitted_unaligned CPTAC3 4995c0b0-d037-4ebe-b8fb-9a70591542be 6ea3fffc4c381bb50e3b928b2463681d {"aliquot_tag": "ALQ_801a498e", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.RNA-Seq.S2_L006_R2.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R2_001.fastq.gz 3860601150 FASTQ S2_L006_R2 submitted_unaligned CPTAC3 624fcdb8-e2ba-48b5-91f6-7c2c2447fc0b 2515f3f2c321a9c4d9ec7a509d45a428 {"aliquot_tag": "ALQ_801a498e", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.RNA-Seq.transcriptome.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.transcriptome.gdc_realn.bam 9169814363 BAM transcriptome harmonized CPTAC3 ecdfa919-dded-4699-a2ef-f63b7b1f89bf bab1eb3a7fe443ab14ee00818d2c5dad {"aliquot_tag": "ALQ_801a498e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.WGS.N C3N-00828 HNSCC WGS blood_normal CPT0013200002 CPT0013200002.WholeGenome.RP-1303.bam 60644745059 BAM submitted_aligned CPTAC3 5e758814-7ab3-421d-b9b7-ca30393d1a81 86503cf2194c54adc8ea0f61ecca3915 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00828.WGS.N.hg38 C3N-00828 HNSCC WGS blood_normal CPT0013200002 07d2af8c-bf1c-41a4-927d-502e45817b7f_gdc_realn.bam 89624454199 BAM harmonized CPTAC3 425396fe-ddf8-4150-a043-681f8f3c6ea2 fe98551acf1b274d230ba2f4d7557307 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00828.WGS.T C3N-00828 HNSCC WGS tumor CPT0013130009 CPT0013130009.WholeGenome.RP-1303.bam 78736815725 BAM submitted_aligned CPTAC3 9298184d-d31b-46ac-814a-d42e75d378f0 6e533f7d973d11d920d69d28365e427d {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.WGS.T.hg38 C3N-00828 HNSCC WGS tumor CPT0013130009 ed761409-25ad-4f1c-997f-3b348bdb829e_gdc_realn.bam 117169090906 BAM harmonized CPTAC3 c8b07aee-a360-47a9-b658-df495b1e50e1 75b6d4c70ce4455fb0a50de4c7fab48b {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.WXS.N C3N-00828 HNSCC WXS blood_normal CPT0013200002 CPT0013200002.WholeExome.RP-1303.bam 30429833201 BAM submitted_aligned CPTAC3 d841b0aa-4804-4904-ac8f-8e0bc185fc7f 7f026e0def6ff3b86d3e364497b6e9e3 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00828.WXS.N.hg38 C3N-00828 HNSCC WXS blood_normal CPT0013200002 07d2af8c-bf1c-41a4-927d-502e45817b7f_gdc_realn.bam 41350047760 BAM harmonized CPTAC3 9fe8169a-d238-410d-9b42-faad8b950bad bf9ae34e3814c0f907c29bc754344128 {"aliquot_tag": "ALQ_464385e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00828.WXS.T C3N-00828 HNSCC WXS tumor CPT0013130009 CPT0013130009.WholeExome.RP-1303.bam 39574960135 BAM submitted_aligned CPTAC3 a89448da-6504-4154-8ffd-0516bf1f4e48 c27496fb98a0c05fc10d99f1761f066b {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00828.WXS.T.hg38 C3N-00828 HNSCC WXS tumor CPT0013130009 ed761409-25ad-4f1c-997f-3b348bdb829e_gdc_realn.bam 54472832381 BAM harmonized CPTAC3 954bfdf8-a70d-430a-a368-7cb0d60b7c62 4a1d9a093b48b854187a687c9e10ebe1 {"aliquot_tag": "ALQ_10a5541f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.MethArray.Green.T C3N-00829 HNSCC Methylation_Array tumor CPT0013210010 202234380064_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8e821756-58b4-4452-a7cd-e1dde4297f68 905cc0d345bebaa619cee2786625ec66 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.MethArray.Red.T C3N-00829 HNSCC Methylation_Array tumor CPT0013210010 202234380064_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 4eb4f13f-f088-446d-9263-b840011ad315 c3e381131b750759bac3c3e8696d68e2 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.miRNA-Seq.S28_L008_R1.T C3N-00829 HNSCC miRNA-Seq tumor CPT0013210007 180724_UNC32-K00270_0106_BHWK3MBBXX_TGACCA_S28_L008_R1_001.unaln.bam 283732618 BAM S28_L008_R1 submitted_unaligned CPTAC3 d3777ec2-723b-4dd9-81b2-d97c15da0ee9 b60c84c94e3c2fc08e70385c8be08e73 {"aliquot_tag": "ALQ_b4958d6", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.miRNA-Seq.T.hg38 C3N-00829 HNSCC miRNA-Seq tumor CPT0013210007 86cdb3cb-d894-4c5e-8736-67fb5d92a0e0_mirnaseq_gdc_realn.bam 309384381 BAM harmonized CPTAC3 1f8c8d67-6062-420e-b1df-7ca53e3a18b6 255786c828a422a2368e7575d2fc230d {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.RNA-Seq.chimeric.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.chimeric.gdc_realn.bam 66790963 BAM chimeric harmonized CPTAC3 0d643419-1bf6-41d7-a947-66ebba295235 321fd48ebc8aaa4449d76e6eb42bd921 {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.RNA-Seq.genomic.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.genomic.gdc_realn.bam 8975962235 BAM genomic harmonized CPTAC3 ce32122e-68cc-4e75-84e4-01bebb055de0 a5b8e05d122a382b819be6558edb9633 {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.RNA-Seq.S19_L005_R1.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R1_001.fastq.gz 4069137121 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 99d99cc0-1b40-42c5-9cc3-020797d18fbd 444776af8e3837bb14c0668130a73573 {"aliquot_tag": "ALQ_b4958d6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.RNA-Seq.S19_L005_R2.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R2_001.fastq.gz 4358176678 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 a730c04d-450d-4afd-bde8-bd21af872055 3a2532894b224554db053c911f9b6d1d {"aliquot_tag": "ALQ_b4958d6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.RNA-Seq.transcriptome.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.transcriptome.gdc_realn.bam 10561486905 BAM transcriptome harmonized CPTAC3 6e775b7a-a660-4ce4-a6cb-b549b73a482c 2131427e28de9c992ca4b2494f5a3b04 {"aliquot_tag": "ALQ_b4958d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.WGS.N C3N-00829 HNSCC WGS blood_normal CPT0013310002 CPT0013310002.WholeGenome.RP-1303.bam 54397732507 BAM submitted_aligned CPTAC3 6f7c88cf-da1e-4332-b875-3b34ac32df2e 62f51b3182a021150d132c1b709ea93a {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00829.WGS.N.hg38 C3N-00829 HNSCC WGS blood_normal CPT0013310002 c3576999-35ec-48bd-8bbb-e03d03660efa_wgs_gdc_realn.bam 80682174718 BAM harmonized CPTAC3 2ef8a5c4-2c2e-4908-ab76-bd1c1baa1010 6efec95009daf5c65e45875d91e170ee {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00829.WGS.T C3N-00829 HNSCC WGS tumor CPT0013210010 CPT0013210010.WholeGenome.RP-1303.bam 61186775033 BAM submitted_aligned CPTAC3 46dd8190-403c-494b-ac2d-e897496f81ab a1cea06ea7d2b0a37d9a729164c2e555 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.WGS.T.hg38 C3N-00829 HNSCC WGS tumor CPT0013210010 6a6a44ad-49df-4f70-84d3-353ffd1e0241_wgs_gdc_realn.bam 91214568959 BAM harmonized CPTAC3 845de231-5f71-4197-83aa-68769f692ccc fb1d1d78c42a3a1e65c82a26b5060c22 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.WXS.N C3N-00829 HNSCC WXS blood_normal CPT0013310002 CPT0013310002.WholeExome.RP-1303.bam 40328907362 BAM submitted_aligned CPTAC3 8653e166-a09d-4e06-9bd3-4276fe61b2c9 1d2ac7c78b93c47ebdb65acf5e779eb0 {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00829.WXS.N.hg38 C3N-00829 HNSCC WXS blood_normal CPT0013310002 c3576999-35ec-48bd-8bbb-e03d03660efa_wxs_gdc_realn.bam 54185719854 BAM harmonized CPTAC3 c7cdfe37-ab47-4f61-aa5f-ddcc3a63694b 4ff54c340c5b274597a37d9250f6531c {"aliquot_tag": "ALQ_b07f7ffc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00829.WXS.T C3N-00829 HNSCC WXS tumor CPT0013210010 CPT0013210010.WholeExome.RP-1303.bam 37583131325 BAM submitted_aligned CPTAC3 2c2ef1ee-e90a-4a28-b28a-fbce28af1a37 390995bacbf3b35436836a77081b2019 {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00829.WXS.T.hg38 C3N-00829 HNSCC WXS tumor CPT0013210010 6a6a44ad-49df-4f70-84d3-353ffd1e0241_wxs_gdc_realn.bam 52482670344 BAM harmonized CPTAC3 fc0b12a8-0396-40b5-97c7-5c9d90b3edca 19c66dd88549f17cd5ca43fd7ae55a7a {"aliquot_tag": "ALQ_8c36fc34", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.MethArray.Green.A C3N-00831 CCRCC Methylation_Array tissue_normal CPT0089040009 204930630084_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0dbc8e99-fbcc-4cc9-90e2-fd34d15f3ef0 fdaccbdf82da4cc58322c4571642286f {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.MethArray.Green.T C3N-00831 CCRCC Methylation_Array tumor CPT0089020009 202176300001_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 26b20a3e-4688-4f1c-bd86-f80fbe144db4 a2a7acf8409fbf8f912cabd947635eb5 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.MethArray.Red.A C3N-00831 CCRCC Methylation_Array tissue_normal CPT0089040009 204930630084_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 4598c21c-784f-4641-884b-254bc4dc2dc6 e9d7a6d60d0dc268b73353d283186d83 {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.MethArray.Red.T C3N-00831 CCRCC Methylation_Array tumor CPT0089020009 202176300001_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 810625c5-c63e-48ff-9b5f-59c4e6f3959a 3977f751be18ddde74fc62bf7deeabfc {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.miRNA-Seq.A.hg38 C3N-00831 CCRCC miRNA-Seq tissue_normal CPT0089040006 7d047482-7d7e-4e5d-805b-6509222088d7_mirnaseq_gdc_realn.bam 208037007 BAM harmonized CPTAC3 b3acc716-aa41-408b-a58e-fd35991d7308 120c4816d113190c5afe97c05639ab40 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.miRNA-Seq.S19_L006_R1.T C3N-00831 CCRCC miRNA-Seq tumor CPT0089020006 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L006_R1_001.unaln.bam 217285434 BAM S19_L006_R1 submitted_unaligned CPTAC3 77ddf494-8a23-44cb-ba2f-57eca813c0f9 e8244e2174768ba6ad0c30c436419a56 {"aliquot_tag": "ALQ_cd19f7fe", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.miRNA-Seq.S45_L002_R1.A C3N-00831 CCRCC miRNA-Seq tissue_normal CPT0089040006 181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L002_R1_001.unaln.bam 185831721 BAM S45_L002_R1 submitted_unaligned CPTAC3 e240de36-001e-4cc6-844f-55104d16a839 a2b0a72af3ef85994aac8b59ddea48b1 {"aliquot_tag": "ALQ_4259025e", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.miRNA-Seq.T.hg38 C3N-00831 CCRCC miRNA-Seq tumor CPT0089020006 caf46473-127c-4dd0-8f94-c979f7de76e3_mirnaseq_gdc_realn.bam 240737952 BAM harmonized CPTAC3 a1c1a986-ab21-4cc9-baf8-101e44d24c32 3d31487fbdf99b5ce8e9895881ae7daf {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.RNA-Seq.chimeric.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.chimeric.gdc_realn.bam 35876312 BAM chimeric harmonized CPTAC3 7463e6f0-221d-426b-97d5-6163510bace5 85bd7f5748ac069e1cc9acad4ae18467 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.RNA-Seq.chimeric.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.chimeric.gdc_realn.bam 32928633 BAM chimeric harmonized CPTAC3 aa2a895a-5bfe-4905-8c73-3de44bcd3a86 e526ce117bd22780be5f6285c0c7890e {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.RNA-Seq.genomic.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.genomic.gdc_realn.bam 6096304171 BAM genomic harmonized CPTAC3 bd38e560-ad28-4c74-8099-a7c3425f0802 e53442c4debe262809031431acdd5c90 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.RNA-Seq.genomic.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.genomic.gdc_realn.bam 8598876759 BAM genomic harmonized CPTAC3 f25cb6a1-958e-4d57-ac90-38108c092895 de6a828c24af29d9cc9155a468e7bbaf {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.RNA-Seq.S13_L004_R1.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R1_001.fastq.gz 3025483108 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 70c6f7d5-8093-4ef4-83e2-c4c159d37302 560c0dd42dd46a3d3bc2cdf3c072d1e5 {"aliquot_tag": "ALQ_4259025e", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.RNA-Seq.S13_L004_R2.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R2_001.fastq.gz 3253754740 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 21442031-237f-4ef0-8ca5-9b74b06b603b 51a22852d499e8a235b968d1977a669f {"aliquot_tag": "ALQ_4259025e", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.RNA-Seq.S16_L004_R1.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R1_001.fastq.gz 4264066138 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 75651231-85e8-42cc-a674-bec7fc8fda14 94dfbacbe29ea4b18b050e882ed22cb7 {"aliquot_tag": "ALQ_cd19f7fe", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.RNA-Seq.S16_L004_R2.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R2_001.fastq.gz 4700279872 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 939be026-0a90-4585-8a24-b7c83c09d7fb b2e7ed149c2118943593fe61d9a27dc2 {"aliquot_tag": "ALQ_cd19f7fe", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.RNA-Seq.transcriptome.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.transcriptome.gdc_realn.bam 8020472844 BAM transcriptome harmonized CPTAC3 07e2d924-bb8c-471a-95af-45124ffece30 13ebcf715a33dafa9e8892a736ef69c1 {"aliquot_tag": "ALQ_4259025e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.RNA-Seq.transcriptome.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.transcriptome.gdc_realn.bam 12118656226 BAM transcriptome harmonized CPTAC3 4cadf4b8-9de3-43f0-a091-eb7f4aca9282 70bd69c22e66059c4a6dbaa629035f29 {"aliquot_tag": "ALQ_cd19f7fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.WGS.A C3N-00831 CCRCC WGS tissue_normal CPT0089040009 CPT0089040009.WholeGenome.RP-1303.bam 63266517496 BAM submitted_aligned CPTAC3 f2d91634-949a-42b6-8945-f25d8e6e2351 0b76934b1f34031a767a1bd9a9c937bf {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.WGS.A.hg38 C3N-00831 CCRCC WGS tissue_normal CPT0089040009 41651bab-dc0e-4e96-bd48-64609ca45ae2_wgs_gdc_realn.bam 91622950283 BAM harmonized CPTAC3 3da53ada-8a8e-4e35-bfa3-fd77fd0e8d5c c46655faa20131f6f5463b77b00f1796 {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.WGS.N C3N-00831 CCRCC WGS blood_normal CPT0089080002 CPT0089080002.WholeGenome.RP-1303.bam 63963629061 BAM submitted_aligned CPTAC3 d5ec73e5-27d5-4afb-85c2-a7ff6199007d 301dcce0f3e18fa9a1c3b3bcba390466 {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00831.WGS.N.hg38 C3N-00831 CCRCC WGS blood_normal CPT0089080002 8ef6b5d5-6f58-45b8-86d6-30d84fa2cbcd_gdc_realn.bam 96486364210 BAM harmonized CPTAC3 70c5b92d-c293-45a9-a6c2-275b71edc6e6 eac15e9a998fbe353deec8177b95697b {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00831.WGS.T C3N-00831 CCRCC WGS tumor CPT0089020009 CPT0089020009.WholeGenome.RP-1303.bam 72453045404 BAM submitted_aligned CPTAC3 7daf26e5-fe35-4abe-9f99-553da8a72519 4ec24b28e49d48872d160a4c2b842b54 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.WGS.T.hg38 C3N-00831 CCRCC WGS tumor CPT0089020009 bfee5a43-05c8-4d10-a45b-6cf890d9f5ea_gdc_realn.bam 110634408439 BAM harmonized CPTAC3 7c015bd8-c842-489c-b0bb-8bf06ad50050 65891563e6f76c5d06701efa70fa0ef6 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.WXS.A C3N-00831 CCRCC WXS tissue_normal CPT0089040009 CPT0089040009.WholeExome.RP-1303.bam 28182251029 BAM submitted_aligned CPTAC3 3a3e86dc-4613-45c6-b01c-3682ec6f762a 0f4ecf17c4a2ea7bb23685438c68e142 {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.WXS.A.hg38 C3N-00831 CCRCC WXS tissue_normal CPT0089040009 41651bab-dc0e-4e96-bd48-64609ca45ae2_wxs_gdc_realn.bam 37937700744 BAM harmonized CPTAC3 c87cce34-78ca-4a91-aa5e-5ffc810703eb 8e5b1a33f0758c5e67c7a5a95451eddc {"aliquot_tag": "ALQ_d2e61fcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00831.WXS.N C3N-00831 CCRCC WXS blood_normal CPT0089080002 CPT0089080002.WholeExome.RP-1303.bam 35368323331 BAM submitted_aligned CPTAC3 80be5c43-0c84-46ac-b07d-82cddaeac9e7 8a1ff86b9a0e653c792cdc43ff4ca39d {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00831.WXS.N.hg38 C3N-00831 CCRCC WXS blood_normal CPT0089080002 8ef6b5d5-6f58-45b8-86d6-30d84fa2cbcd_gdc_realn.bam 47891996068 BAM harmonized CPTAC3 82e31ca9-aff8-48a1-af9a-a91da570614a 5a6325e4062958808fdce676d2c7cdb6 {"aliquot_tag": "ALQ_80c42b46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00831.WXS.T C3N-00831 CCRCC WXS tumor CPT0089020009 CPT0089020009.WholeExome.RP-1303.bam 30434715131 BAM submitted_aligned CPTAC3 a249ae01-b2fa-4435-87a2-ec8abade97bb d8e91dc7941c24d64e0863425b9d8ef2 {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00831.WXS.T.hg38 C3N-00831 CCRCC WXS tumor CPT0089020009 bfee5a43-05c8-4d10-a45b-6cf890d9f5ea_gdc_realn.bam 41878250213 BAM harmonized CPTAC3 46a0f055-7bb5-4cd4-943c-d47e613c935c 1ccf3ffb8be9dea711666a371bcda23b {"aliquot_tag": "ALQ_5da6ea6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.MethArray.Green.T C3N-00832 CCRCC Methylation_Array tumor CPT0078800009 202184900128_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8086ab35-1a04-44cf-944d-d69c91c6c9a2 152efe84e728450e6078879d14da40e0 {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.MethArray.Red.T C3N-00832 CCRCC Methylation_Array tumor CPT0078800009 202184900128_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 6d52999c-e49f-49e7-9f83-4769cfef44fb db6137dbe3f591c8a59065ccae906cbc {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.miRNA-Seq.S17_L008_R1.T C3N-00832 CCRCC miRNA-Seq tumor CPT0078800006 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L008_R1_001.unaln.bam 225468813 BAM S17_L008_R1 submitted_unaligned CPTAC3 211ed18f-49c5-4570-9444-528cf78d20cc fcf67e9b08c8312d1c0cf46e8d1edb34 {"aliquot_tag": "ALQ_24dd3feb", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.miRNA-Seq.T.hg38 C3N-00832 CCRCC miRNA-Seq tumor CPT0078800006 a8e3f8fb-6dd5-4600-adcd-612f69e9af2b_mirnaseq_gdc_realn.bam 248993644 BAM harmonized CPTAC3 00ae5e98-5d0e-4f3a-a6ce-c182056e32b5 875ad6fbab578cbf4ae4678aff3de299 {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.RNA-Seq.chimeric.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.chimeric.gdc_realn.bam 166670744 BAM chimeric harmonized CPTAC3 d4475369-bf7e-4a08-98b7-7cb279e732c6 28de0e59c78b8be3f34d8b9f8c4cee1c {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.RNA-Seq.genomic.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.genomic.gdc_realn.bam 7197046682 BAM genomic harmonized CPTAC3 35c6646b-eee0-434a-a799-b2b955ce72d5 5da326f6390567df37526f30dd7e42e3 {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.RNA-Seq.S6_L002_R1.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R1_001.fastq.gz 3711792225 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 4db2c00d-d95a-4bf3-99cc-a877881e4293 1a33480767fb018dca2922573ca4bc77 {"aliquot_tag": "ALQ_24dd3feb", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.RNA-Seq.S6_L002_R2.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R2_001.fastq.gz 3875699142 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 56707d27-a982-41f5-8436-0831ec5cbbfa 5076acbf715bfa1a54aae09145592081 {"aliquot_tag": "ALQ_24dd3feb", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.RNA-Seq.transcriptome.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.transcriptome.gdc_realn.bam 10854837740 BAM transcriptome harmonized CPTAC3 3af562c2-8523-4873-9cd0-5161675ab403 e541b6b8683f53800789f7479093dedc {"aliquot_tag": "ALQ_24dd3feb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.WGS.N C3N-00832 CCRCC WGS blood_normal CPT0078820002 CPT0078820002.WholeGenome.RP-1303.bam 65830043608 BAM submitted_aligned CPTAC3 6a95bfb0-64f5-46cc-8b6a-588ddc8bcfbd 30d12620ea5123628f0139237e6c3990 {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00832.WGS.N.hg38 C3N-00832 CCRCC WGS blood_normal CPT0078820002 bfa631c6-91ae-44c0-b4c2-9841b9a66bd6_gdc_realn.bam 99357716545 BAM harmonized CPTAC3 f99c3235-1610-4f9d-bf68-7eb867d3b099 b6932f23951034630624c874c97c7fdb {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00832.WGS.T C3N-00832 CCRCC WGS tumor CPT0078800009 CPT0078800009.WholeGenome.RP-1303.bam 68344556135 BAM submitted_aligned CPTAC3 cac34775-dd39-4495-9456-ef2556d8ad9c 13c2f41c80cc60403278b71aefeaea4b {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.WGS.T.hg38 C3N-00832 CCRCC WGS tumor CPT0078800009 80e53432-49f8-423b-b1ec-c3e7c2aa2a38_gdc_realn.bam 101051041532 BAM harmonized CPTAC3 4bfc2974-3e15-460e-8add-6666df405979 8e2eb3a5bb17329338118ba7bd05a31b {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.WXS.N C3N-00832 CCRCC WXS blood_normal CPT0078820002 CPT0078820002.WholeExome.RP-1303.bam 29002477932 BAM submitted_aligned CPTAC3 573f820c-6bec-4e10-925b-d9a78b7af1f8 ddfe7c7be7de025939c5def4cae3bc58 {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00832.WXS.N.hg38 C3N-00832 CCRCC WXS blood_normal CPT0078820002 bfa631c6-91ae-44c0-b4c2-9841b9a66bd6_gdc_realn.bam 39754744847 BAM harmonized CPTAC3 65f8931a-069b-4fc1-aefb-9dd386c3c41c d11046985cd9a3e5b24412c191de1423 {"aliquot_tag": "ALQ_5970a892", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00832.WXS.T C3N-00832 CCRCC WXS tumor CPT0078800009 CPT0078800009.WholeExome.RP-1303.bam 28206562500 BAM submitted_aligned CPTAC3 35bd4d75-d425-4b79-a9e7-50a5531192e3 bbe43d152c90142b130f5dcc716a8fca {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00832.WXS.T.hg38 C3N-00832 CCRCC WXS tumor CPT0078800009 80e53432-49f8-423b-b1ec-c3e7c2aa2a38_gdc_realn.bam 38790048381 BAM harmonized CPTAC3 c3f418aa-a956-45f0-8722-7051115cf8fe a42cb3c272d43555563809fe4421af41 {"aliquot_tag": "ALQ_b462227a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.MethArray.Green.A C3N-00834 CCRCC Methylation_Array tissue_normal CPT0078840009 204930640064_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2f963aff-c2a5-4795-a28d-74ecd99516f5 2162e287547af25002c37dd47c9b75bf {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.MethArray.Green.T C3N-00834 CCRCC Methylation_Array tumor CPT0078830009 202184900149_R05C01_Grn.idat 13676256 IDAT Green NA CPTAC3 88a9644e-7525-4f3d-843f-e7e042651935 b3703ad11dc9023bb7f8bf14929ec504 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.MethArray.Red.A C3N-00834 CCRCC Methylation_Array tissue_normal CPT0078840009 204930640064_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 411e4515-9521-40f0-b853-c67e521bfa54 f3385e01bd8c237b0a53bd7dc4cc628d {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.MethArray.Red.T C3N-00834 CCRCC Methylation_Array tumor CPT0078830009 202184900149_R05C01_Red.idat 13676256 IDAT Red NA CPTAC3 5fac4d37-3e2f-482b-9589-292f1f6244bc 74f06045fcfc9ea2c2d3332a2950bec1 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.miRNA-Seq.A.hg38 C3N-00834 CCRCC miRNA-Seq tissue_normal CPT0078840006 7cca990f-7e32-41a8-a80b-58364c2dd212_mirnaseq_gdc_realn.bam 187348857 BAM harmonized CPTAC3 81bd2540-3678-42a5-a732-6dea370468b0 9b586e97ada7491ed508373db500878d {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.miRNA-Seq.S18_L008_R1.T C3N-00834 CCRCC miRNA-Seq tumor CPT0078830006 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L008_R1_001.unaln.bam 283603671 BAM S18_L008_R1 submitted_unaligned CPTAC3 1ecceb8f-3c14-4204-b91f-340c54328600 796123c940421ec26eb4d894a1c9b48b {"aliquot_tag": "ALQ_637d453b", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.miRNA-Seq.S23_L003_R1.A C3N-00834 CCRCC miRNA-Seq tissue_normal CPT0078840006 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L003_R1_001.unaln.bam 166880981 BAM S23_L003_R1 submitted_unaligned CPTAC3 80d9862a-aef6-497c-9aa6-39748f755286 8bd57eac38ac0433d1018548182571ca {"aliquot_tag": "ALQ_d15d992b", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.miRNA-Seq.T.hg38 C3N-00834 CCRCC miRNA-Seq tumor CPT0078830006 d4b6f3f7-cd41-4e19-9b39-73ec5629a9e1_mirnaseq_gdc_realn.bam 310651020 BAM harmonized CPTAC3 47fe2a34-7cad-49aa-be0b-0f7fae76cbf8 57640bae67259b12dabd279f4ff05523 {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.RNA-Seq.chimeric.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.chimeric.gdc_realn.bam 42421478 BAM chimeric harmonized CPTAC3 bdff0bdf-0ac2-4e9d-82c5-3c8a8162a00a 942efbbad7d887e9d40cd7ea87bd601a {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.RNA-Seq.chimeric.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.chimeric.gdc_realn.bam 170263334 BAM chimeric harmonized CPTAC3 9fde1763-b115-4ef1-b232-fbe89dd62617 e20b3bf667d6170efe53ea2668056325 {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.RNA-Seq.genomic.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.genomic.gdc_realn.bam 8296844679 BAM genomic harmonized CPTAC3 a95e0421-eebd-4f4f-9152-d14c53d37e7e c9363e5d07cebf011c206a7a0d0a19bc {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.RNA-Seq.genomic.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.genomic.gdc_realn.bam 8576316786 BAM genomic harmonized CPTAC3 7e87c07d-bb84-4037-a75c-8e9204fe592b 14496087b2b858bb75f67a9e5b28a60e {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.RNA-Seq.S33_L006_R1.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R1_001.fastq.gz 3924986180 FASTQ S33_L006_R1 submitted_unaligned CPTAC3 70813edb-6aad-47cc-b2d1-44787436cf6d c7a2246a14482cce5f85d2c0d89d958c {"aliquot_tag": "ALQ_d15d992b", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.RNA-Seq.S33_L006_R2.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R2_001.fastq.gz 4309424292 FASTQ S33_L006_R2 submitted_unaligned CPTAC3 b97d09aa-4301-41e5-b6fa-5c90cc81b4bf 34da619af2992cf8088aaa0afe9c4f87 {"aliquot_tag": "ALQ_d15d992b", "sample": "S33", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.RNA-Seq.S8_L002_R1.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R1_001.fastq.gz 4105831499 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 a29dc27e-82dc-46be-8d51-e09157367501 efbd09f70ec1eb1de6415ab33de08bb6 {"aliquot_tag": "ALQ_637d453b", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.RNA-Seq.S8_L002_R2.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R2_001.fastq.gz 4416622812 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 17ada189-9329-4f1f-b2cf-c73171512d49 5fa1a11d3a9293acf078be398a39ac17 {"aliquot_tag": "ALQ_637d453b", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.RNA-Seq.transcriptome.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.transcriptome.gdc_realn.bam 9092420505 BAM transcriptome harmonized CPTAC3 17de8650-69f2-4809-9415-204bc360ec63 e86e91ff27b10e14e87102e7322dd910 {"aliquot_tag": "ALQ_d15d992b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.RNA-Seq.transcriptome.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.transcriptome.gdc_realn.bam 12828349249 BAM transcriptome harmonized CPTAC3 583360c3-c86b-4a9a-8853-a14e78da1ec2 db74302a70d9cc3b79da9d1db51d2cfb {"aliquot_tag": "ALQ_637d453b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.WGS.A C3N-00834 CCRCC WGS tissue_normal CPT0078840009 CPT0078840009.WholeGenome.RP-1303.bam 63294348929 BAM submitted_aligned CPTAC3 b91d6d00-0fa5-4295-8037-3dbef2b675ca 91ac1297eb2ad3fe1c2d1d935d405661 {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.WGS.A.hg38 C3N-00834 CCRCC WGS tissue_normal CPT0078840009 cf4e4723-95df-4d69-a727-b030082f8b20_wgs_gdc_realn.bam 92007497524 BAM harmonized CPTAC3 f30f4f9e-4ec2-4d7f-bb8c-23a697defb22 254b7a3ff2102a3a475287d250e0cc93 {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.WGS.N C3N-00834 CCRCC WGS blood_normal CPT0078870002 CPT0078870002.WholeGenome.RP-1303.bam 66775303940 BAM submitted_aligned CPTAC3 d06d4331-e69b-4000-8aee-2253c02e39a4 89330fb981338dcf20a37163839114e3 {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00834.WGS.N.hg38 C3N-00834 CCRCC WGS blood_normal CPT0078870002 3472b9ea-b147-4cd6-88d8-53c41cbe3efe_gdc_realn.bam 101403321079 BAM harmonized CPTAC3 2fde3866-807d-43ac-b615-8bfbc01c0baf b453d446bbc14516b286a9e0ea67f939 {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00834.WGS.T C3N-00834 CCRCC WGS tumor CPT0078830009 CPT0078830009.WholeGenome.RP-1303.bam 57774734623 BAM submitted_aligned CPTAC3 abf399d5-a285-4539-a75a-da6331d7784a a14e28468a454b40f72d432975b2ef51 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.WGS.T.hg38 C3N-00834 CCRCC WGS tumor CPT0078830009 c913633d-4498-4e7c-aa72-c7bd0c2924fa_gdc_realn.bam 87478246080 BAM harmonized CPTAC3 8059f369-bc8d-4a49-8701-4e266fa9a995 fc4c5c606b1eadfafe63f939e4967db1 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.WXS.A C3N-00834 CCRCC WXS tissue_normal CPT0078840009 CPT0078840009.WholeExome.RP-1303.bam 38219534472 BAM submitted_aligned CPTAC3 bf91fa69-58d4-41a3-bd10-a4df98a55a59 2a9013647f784b164f07c1f21b0cd784 {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.WXS.A.hg38 C3N-00834 CCRCC WXS tissue_normal CPT0078840009 cf4e4723-95df-4d69-a727-b030082f8b20_wxs_gdc_realn.bam 51450090167 BAM harmonized CPTAC3 13aef238-650e-4deb-be40-2fb7f9b87b64 fa1f8e263319b7531daa090163c47c2c {"aliquot_tag": "ALQ_41e284ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00834.WXS.N C3N-00834 CCRCC WXS blood_normal CPT0078870002 CPT0078870002.WholeExome.RP-1303.bam 26634772618 BAM submitted_aligned CPTAC3 7b341f5a-4b93-4ce1-abfc-d2907ad63c8a ff25f1482b055d84240867cb3e33ddd1 {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00834.WXS.N.hg38 C3N-00834 CCRCC WXS blood_normal CPT0078870002 3472b9ea-b147-4cd6-88d8-53c41cbe3efe_gdc_realn.bam 36196304357 BAM harmonized CPTAC3 d6406e54-5b34-4f16-91f4-3d61e9e7ce85 eba900136cc611fc5b6879dc780ae41e {"aliquot_tag": "ALQ_919027e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00834.WXS.T C3N-00834 CCRCC WXS tumor CPT0078830009 CPT0078830009.WholeExome.RP-1303.bam 32724119964 BAM submitted_aligned CPTAC3 77bdd0ad-c55b-4ec7-96c3-cc6097e354fa bcb249ffc2d9ec871bd91fb6dc3e553a {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00834.WXS.T.hg38 C3N-00834 CCRCC WXS tumor CPT0078830009 c913633d-4498-4e7c-aa72-c7bd0c2924fa_gdc_realn.bam 45211018021 BAM harmonized CPTAC3 254a69d8-6bbf-4e44-bdcb-a3a6a8a9de09 4d88b0b63d3d33dddc0b849bd6df8fb7 {"aliquot_tag": "ALQ_f3c258aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00835.MethArray.Green.T C3N-00835 CCRCC Methylation_Array tumor CPT0379760009 205589740002_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 860c6f18-bbc5-4e1b-af81-2f4401070c9f 2c52d8b0b58476e8c6f491898d6a6309 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.MethArray.Red.T C3N-00835 CCRCC Methylation_Array tumor CPT0379760009 205589740002_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 d0799d49-2b6d-4403-86ba-85ad843a5bbc 8a2ef690946287762aa258bad05d10f9 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.miRNA-Seq.S43_L003_R1.T C3N-00835 CCRCC miRNA-Seq tumor CPT0379760006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGATGT_S43_L003_R1_001.unaln.bam 156332770 BAM S43_L003_R1 submitted_unaligned CPTAC3 8916a64c-e1dd-4324-8be8-3cacd2992b93 bfaa8a6184509a1a47b24f919418cb74 {"aliquot_tag": "ALQ_c5314fef", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.miRNA-Seq.T.hg38 C3N-00835 CCRCC miRNA-Seq tumor CPT0379760006 fc8c60c7-9ba5-4176-b6e8-0093df3c0a09_mirnaseq_gdc_realn.bam 167584818 BAM harmonized CPTAC3 ae8c5d97-cd9e-445c-81b9-2f9c75963595 d704b8b2ca427287a3e3d501ce8d87f6 {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.RNA-Seq.chimeric.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.chimeric.gdc_realn.bam 106185527 BAM chimeric harmonized CPTAC3 64b015ff-4b13-4060-849f-13421e2810cb 78e17b998a744226e58d36d1df4fe2be {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.RNA-Seq.genomic.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.genomic.gdc_realn.bam 10205729254 BAM genomic harmonized CPTAC3 ba5b3934-2f9d-41e4-9fe4-1f52122ff890 1a60d72825ce0561bc266f1c410ffbd0 {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.RNA-Seq.S32_L008_R1.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 4647548336 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 31889c13-b96a-4e90-b7af-f4e9b8968d75 981b6098a1029a41dd192a5c7938c2b2 {"aliquot_tag": "ALQ_c5314fef", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.RNA-Seq.S32_L008_R2.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 5147785192 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 ad3fedb2-00e1-4987-bb86-d02a4f3c50d1 3cc565746d0c7672808b490e03df378a {"aliquot_tag": "ALQ_c5314fef", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.RNA-Seq.transcriptome.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.transcriptome.gdc_realn.bam 13793597745 BAM transcriptome harmonized CPTAC3 7ecb4399-cc7e-4993-a2e3-35b488e08a6a bb1d868df7f3ecf73d7dd200fcb303f4 {"aliquot_tag": "ALQ_c5314fef", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.WGS.N C3N-00835 CCRCC WGS blood_normal CPT0386430002 CPT0386430002.WholeGenome.RP-2158.bam 22472743254 BAM submitted_aligned CPTAC3 f16ee0f0-819e-46e3-846f-7f8e5988fb91 0b347e6099b0038cc82a2c89d8cf918f {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00835.WGS.N.hg38 C3N-00835 CCRCC WGS blood_normal CPT0386430002 23fe606a-7dc4-4b22-bb46-92bdef045100_wgs_gdc_realn.bam 66475736026 BAM harmonized CPTAC3 f58baf98-491c-455a-b819-fe36bf57b223 1fd4be631561ee6abf375ca6d4b0a23d {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00835.WGS.T C3N-00835 CCRCC WGS tumor CPT0379760009 CPT0379760009.WholeGenome.RP-2158.bam 22773167943 BAM submitted_aligned CPTAC3 685c3d85-b4d7-4ab5-99c6-468e36720544 4fe5bbe741b2dc77038417b86893e399 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.WGS.T.hg38 C3N-00835 CCRCC WGS tumor CPT0379760009 cdabc374-04c1-40b3-8ae1-2a94eba74ff0_wgs_gdc_realn.bam 69326977309 BAM harmonized CPTAC3 2d298fe7-96d6-48fd-9797-b44a64a47a5d 8dbbbbe5da39aee3ef43f440a48b372d {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.WXS.N C3N-00835 CCRCC WXS blood_normal CPT0386430002 CPT0386430002.WholeExome.RP-1303.bam 29894332177 BAM submitted_aligned CPTAC3 189ae8f3-3d32-426f-b5fe-2cb195fbbc1c 55deb9d2b687e7f3773e1622b6ccdd5e {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00835.WXS.N.hg38 C3N-00835 CCRCC WXS blood_normal CPT0386430002 23fe606a-7dc4-4b22-bb46-92bdef045100_wxs_gdc_realn.bam 40629434358 BAM harmonized CPTAC3 4716b5bc-9e86-40bb-9247-85f69490c927 82b941c0bb902474832cf3a332022576 {"aliquot_tag": "ALQ_a340146d", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-00835.WXS.T C3N-00835 CCRCC WXS tumor CPT0379760009 CPT0379760009.WholeExome.RP-1303.bam 23214233188 BAM submitted_aligned CPTAC3 18e1dc69-0017-47f3-8173-e575572f9a6f 221903d43eb897ae21ccc23fd22c7a68 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00835.WXS.T.hg38 C3N-00835 CCRCC WXS tumor CPT0379760009 cdabc374-04c1-40b3-8ae1-2a94eba74ff0_wxs_gdc_realn.bam 31811007033 BAM harmonized CPTAC3 bf90dfeb-0539-49be-b436-930fcf2e884c 90667bc43880cfce05bc96ad4280e0e9 {"aliquot_tag": "ALQ_558e527e", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00836.MethArray.Green.T C3N-00836 UCEC Methylation_Array tumor CPT0023810009 202184900110_R02C01_Grn.idat 13676256 IDAT Green NA CPTAC3 71202e49-a728-4716-986c-c2e28dfe9e1c 930ca3061753695053e107f2015eaaa1 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.MethArray.Red.T C3N-00836 UCEC Methylation_Array tumor CPT0023810009 202184900110_R02C01_Red.idat 13676256 IDAT Red NA CPTAC3 09229c28-8d71-4727-acdb-c89b1de5294b 22f97888c50733a1656ab695e491218c {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.miRNA-Seq.S43_L003_R1.T C3N-00836 UCEC miRNA-Seq tumor CPT0023810006 180924_UNC31-K00269_0154_AHWTMLBBXX_ACAGTG_S43_L003_R1_001.unaln.bam 199848463 BAM S43_L003_R1 submitted_unaligned CPTAC3 ca035248-8ee1-4344-a480-368a3ff2c821 a9c7ee0804138d2ac0bdbc520fd4ca2b {"aliquot_tag": "ALQ_535a4cc5", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.miRNA-Seq.T.hg38 C3N-00836 UCEC miRNA-Seq tumor CPT0023810006 01defb40-46cb-481d-b6e3-3be864e6e156_mirnaseq_gdc_realn.bam 219415194 BAM harmonized CPTAC3 94e6a782-c0f3-4bee-a62c-2ce90e1e1586 2d05ecdcfa5454f2fc2dbf412383be07 {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.RNA-Seq.chimeric.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.chimeric.gdc_realn.bam 83346250 BAM chimeric harmonized CPTAC3 49d5419f-906f-4fda-ac7a-17f058676293 61c44176cebeefca1f345d1f16c12c9b {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.RNA-Seq.genomic.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.genomic.gdc_realn.bam 7690638681 BAM genomic harmonized CPTAC3 e9ded5c6-aa0b-43db-ab41-3ccf444a1b76 57a18677766ee44894fadf69d3c07c71 {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.RNA-Seq.S6_L008_R1.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R1_001.fastq.gz 3739893939 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 f19c6938-942c-47bd-b72d-79d62e8fbeb8 f32f43a984b9abc8e38b7243862d2520 {"aliquot_tag": "ALQ_535a4cc5", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.RNA-Seq.S6_L008_R2.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R2_001.fastq.gz 4041503918 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 5c51da7e-eead-4fd1-8343-c4d4ddc19458 b7eea84db3b7e1722e2aafa22c84f267 {"aliquot_tag": "ALQ_535a4cc5", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.RNA-Seq.transcriptome.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.transcriptome.gdc_realn.bam 9978064516 BAM transcriptome harmonized CPTAC3 2f4565f6-f8dc-4ecf-a91d-a6f558ed2799 0ec0ac967ed230a6193cc51b8ebcb312 {"aliquot_tag": "ALQ_535a4cc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.WGS.N C3N-00836 UCEC WGS blood_normal CPT0023910002 CPT0023910002.WholeGenome.RP-1303.bam 61848680396 BAM submitted_aligned CPTAC3 f7292774-63e7-48af-b349-5baa0bfae812 2bcdd0ffc71ed8618fe3bc780f3d3301 {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00836.WGS.N.hg38 C3N-00836 UCEC WGS blood_normal CPT0023910002 fa4f35a1-cb0a-4d92-8631-4f675161b355_gdc_realn.bam 90862219577 BAM harmonized CPTAC3 09220dab-d4b0-4d15-bb22-a222b5d0abc1 dd11dd26ad360ce6062448da11776ccd {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00836.WGS.T C3N-00836 UCEC WGS tumor CPT0023810009 CPT0023810009.WholeGenome.RP-1303.bam 61813589758 BAM submitted_aligned CPTAC3 bf1919f9-ec1f-4f67-be2e-52ce92e21b5d 022908ed42999d5fa3c605703174c486 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.WGS.T.hg38 C3N-00836 UCEC WGS tumor CPT0023810009 08fed8ee-199e-4b11-bcee-2b3b2b320ae9_gdc_realn.bam 89213250637 BAM harmonized CPTAC3 3b118458-2f1c-42f4-9ae0-17485da8782a 60e784a00b5e0450683199e29006d3b1 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.WXS.N C3N-00836 UCEC WXS blood_normal CPT0023910002 CPT0023910002.WholeExome.RP-1303.bam 25792530678 BAM submitted_aligned CPTAC3 7cd78b8b-aa8b-4319-a7a2-a0116fdb5cf3 26026fbec7073828d49b67c4eed77853 {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00836.WXS.N.hg38 C3N-00836 UCEC WXS blood_normal CPT0023910002 fa4f35a1-cb0a-4d92-8631-4f675161b355_gdc_realn.bam 35104751912 BAM harmonized CPTAC3 fc4f4a44-123f-4d29-82e8-c155ed19910f fbfdcb6014bd3635ab2685e8153830c9 {"aliquot_tag": "ALQ_9f6b5b79", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00836.WXS.T C3N-00836 UCEC WXS tumor CPT0023810009 CPT0023810009.WholeExome.RP-1303.bam 21886191843 BAM submitted_aligned CPTAC3 885e2d3a-b405-444f-9657-32e7aba0d450 3fb7d41ad8314765c0e2afc29235b75f {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00836.WXS.T.hg38 C3N-00836 UCEC WXS tumor CPT0023810009 08fed8ee-199e-4b11-bcee-2b3b2b320ae9_gdc_realn.bam 30037137409 BAM harmonized CPTAC3 b3f4557b-7fb4-41e5-b5b9-44c725451295 87a24001fa1db76703aed6d341acba45 {"aliquot_tag": "ALQ_c3e55154", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00839.MethArray.Green.T C3N-00839 LSCC Methylation_Array tumor CPT0024970009 202163530120_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 669278c7-93d4-4d55-82af-849816a5f965 f362aedd8901aba23b31619bbd24728d {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.MethArray.Red.T C3N-00839 LSCC Methylation_Array tumor CPT0024970009 202163530120_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 9e340afb-246b-4d85-8f49-902d4e043893 8b9fab0f91b00a977897d534651b5b0c {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.miRNA-Seq.S45_L003_R1.T C3N-00839 LSCC miRNA-Seq tumor CPT0024970006 180924_UNC31-K00269_0154_AHWTMLBBXX_GGCTAC_S45_L003_R1_001.unaln.bam 216944500 BAM S45_L003_R1 submitted_unaligned CPTAC3 14814052-e05f-4230-896f-7f4a6bf54ec8 3118e0b23b25209d99cf21a415c25fc3 {"aliquot_tag": "ALQ_d2e1544e", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.miRNA-Seq.T.hg38 C3N-00839 LSCC miRNA-Seq tumor CPT0024970006 db2bd953-a615-4adc-8d1b-bdbfd1202a1a_mirnaseq_gdc_realn.bam 238489079 BAM harmonized CPTAC3 c1efc64c-b795-4f1e-84aa-885bc4506d3f eec2f833ce01bef8fd5aeedeac975929 {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.RNA-Seq.chimeric.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.chimeric.gdc_realn.bam 88812673 BAM chimeric harmonized CPTAC3 7b9a27b5-1a1c-45e9-986a-881fa46fcd48 154448d800ce8cc8583232c83082ff7c {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.RNA-Seq.genomic.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.genomic.gdc_realn.bam 8110345357 BAM genomic harmonized CPTAC3 f1833804-0512-498f-ad0e-e27d641500e4 9b5a01d34186658c63846b4eed82b846 {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.RNA-Seq.S22_L008_R1.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R1_001.fastq.gz 3780572540 FASTQ S22_L008_R1 submitted_unaligned CPTAC3 d7fe377f-d586-48cc-94f7-88acb6cbc016 df81ef6ef55e71da2b5ff05a6fdc4436 {"aliquot_tag": "ALQ_d2e1544e", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.RNA-Seq.S22_L008_R2.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R2_001.fastq.gz 3809319737 FASTQ S22_L008_R2 submitted_unaligned CPTAC3 9fea3417-da33-45a7-a57f-93e97151289d 52143e51cede8a5f40ed110e54925832 {"aliquot_tag": "ALQ_d2e1544e", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.RNA-Seq.transcriptome.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.transcriptome.gdc_realn.bam 9322250128 BAM transcriptome harmonized CPTAC3 a5a6585a-fe35-4972-927d-2e727f6e156e 14791355ec662f013277f84178bf02da {"aliquot_tag": "ALQ_d2e1544e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.WGS.N C3N-00839 LSCC WGS blood_normal CPT0026180002 CPT0026180002.WholeGenome.RP-1303.bam 89334773314 BAM submitted_aligned CPTAC3 d7e9b08a-c0b0-41b8-81f8-fd9febae970d 4cb1f9cfdc2c9eedd1660fa07b845ea6 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00839.WGS.N.hg38 C3N-00839 LSCC WGS blood_normal CPT0026180002 516dbdf8-2b5a-4bb3-ae4e-95c4d3700e6c_gdc_realn.bam 139953537186 BAM harmonized CPTAC3 2afa22d9-5b15-4eee-91e4-b9b52787d940 e979bfd6c7e55aa0d0d188f4c75c2993 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00839.WGS.T C3N-00839 LSCC WGS tumor CPT0024970009 CPT0024970009.WholeGenome.RP-1303.bam 68501059023 BAM submitted_aligned CPTAC3 62694aa0-71f1-4cc8-9e78-fcec4dcfba13 480fcd2d8e51eb61be226b292ca6eb58 {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.WGS.T.hg38 C3N-00839 LSCC WGS tumor CPT0024970009 b8a43596-790d-461a-bc55-3c2bf876b979_gdc_realn.bam 105484587913 BAM harmonized CPTAC3 82a9e684-fe5b-41eb-9b5a-6ae7216cf20e 5ac0f9f1eb03a1e97f9fe2434e4eb09a {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.WXS.N C3N-00839 LSCC WXS blood_normal CPT0026180002 CPT0026180002.WholeExome.RP-1303.bam 29719562393 BAM submitted_aligned CPTAC3 0e2066a8-c012-4633-a28c-556ca16e201d 53fde9cbbd941535e2cd8c6885d1b7e5 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00839.WXS.N.hg38 C3N-00839 LSCC WXS blood_normal CPT0026180002 516dbdf8-2b5a-4bb3-ae4e-95c4d3700e6c_gdc_realn.bam 39993924874 BAM harmonized CPTAC3 832224b4-903f-49d3-ab34-e5ca88d99a54 a1e52be3f580b71e621bc84e06e68166 {"aliquot_tag": "ALQ_2c1094c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00839.WXS.T C3N-00839 LSCC WXS tumor CPT0024970009 CPT0024970009.WholeExome.RP-1303.bam 35083401750 BAM submitted_aligned CPTAC3 55cf3c99-3264-45fb-95c3-b25a9605c0dd 7ca20411ea3a7eee5ea35d6d5e6d7dda {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00839.WXS.T.hg38 C3N-00839 LSCC WXS tumor CPT0024970009 b8a43596-790d-461a-bc55-3c2bf876b979_gdc_realn.bam 47748726029 BAM harmonized CPTAC3 63b3f8cb-279c-4143-b608-6e52f757d48a 0c13a66d16e368e077efa6b5203bfaaf {"aliquot_tag": "ALQ_425e49df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00846.MethArray.Green.T C3N-00846 HNSCC Methylation_Array tumor CPT0024810009 202163550007_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c83e5b0f-84fd-4e33-8438-042ae10cb3f8 ed538e2a8aaa1442997bab1d4af2b47c {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.MethArray.Red.T C3N-00846 HNSCC Methylation_Array tumor CPT0024810009 202163550007_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 521139dd-4ea1-4183-93d6-1b5464ce7831 5d46bfac28e040159f1ef21730dfa04c {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.miRNA-Seq.S8_L003_R1.T C3N-00846 HNSCC miRNA-Seq tumor CPT0024810006 181113_UNC31-K00269_0164_AH23NNBBXY_CACTCA_S8_L003_R1_001.unaln.bam 259323326 BAM S8_L003_R1 submitted_unaligned CPTAC3 d5085069-3bec-4a1a-97c4-413226426357 2a0816749b52f7d98ebd223ec763af4f {"aliquot_tag": "ALQ_96fd724b", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.miRNA-Seq.T.hg38 C3N-00846 HNSCC miRNA-Seq tumor CPT0024810006 9e849a3d-7532-4785-820c-700b2bda8dea_mirnaseq_gdc_realn.bam 281318645 BAM harmonized CPTAC3 7f2b11a3-1a9b-47c7-80c3-e1d5b74e1d1d d13912cc3b9bc287e722e2d0b2b7f7ab {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.RNA-Seq.chimeric.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.chimeric.gdc_realn.bam 112345312 BAM chimeric harmonized CPTAC3 4a330e56-b2e6-473b-b3fe-9d74fdd5f6e1 7198694e2b81390091d201c9dcff701d {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.RNA-Seq.genomic.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.genomic.gdc_realn.bam 9358590589 BAM genomic harmonized CPTAC3 655b16ed-6152-4c58-8a27-32acf5a64a4b 5a1b495d2c9f6ac2411b36c82fe4ea41 {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.RNA-Seq.S5_L008_R1.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R1_001.fastq.gz 4409378702 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 d6a534be-f72c-48fd-b081-b621cf712da6 a8e040d173ab71c00ac77987ba70ebe3 {"aliquot_tag": "ALQ_96fd724b", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.RNA-Seq.S5_L008_R2.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R2_001.fastq.gz 4778156021 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 49ae8013-5534-42f9-9c67-921897c83feb 4c113db538277d09fd96cfae08f3ce39 {"aliquot_tag": "ALQ_96fd724b", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.RNA-Seq.transcriptome.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.transcriptome.gdc_realn.bam 11002126024 BAM transcriptome harmonized CPTAC3 1939d06b-d192-43e1-8a31-2723ced8c9cb b597b337d452798f7ab0f51eb87bda49 {"aliquot_tag": "ALQ_96fd724b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.WGS.N C3N-00846 HNSCC WGS blood_normal CPT0024890002 CPT0024890002.WholeGenome.RP-1303.bam 85879023449 BAM submitted_aligned CPTAC3 68e7cca7-98d5-4cc5-8423-2ba638053778 5708e81cb3b97b83b9e283611391a4e1 {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00846.WGS.N.hg38 C3N-00846 HNSCC WGS blood_normal CPT0024890002 50ca401a-353c-4ac6-b5b1-10ef34bcc849_gdc_realn.bam 134628683555 BAM harmonized CPTAC3 88ab56f7-89d2-4247-86c8-e168f53c54b6 556bc42d0e6c0b01b3d1c15aad3cec14 {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00846.WGS.T C3N-00846 HNSCC WGS tumor CPT0024810009 CPT0024810009.WholeGenome.RP-1303.bam 67635311417 BAM submitted_aligned CPTAC3 ba6c6061-06c3-4497-b85d-89f7ca843428 a8c4134d72f97029bd00deaedc61eeef {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.WGS.T.hg38 C3N-00846 HNSCC WGS tumor CPT0024810009 e0c7b843-344c-45b6-bdf8-824f62f9fd52_gdc_realn.bam 99427725960 BAM harmonized CPTAC3 64de0f5f-e915-4475-9510-7059a8648148 5a0f54bbef4a4f971ec9f3853dfae2c3 {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.WXS.N C3N-00846 HNSCC WXS blood_normal CPT0024890002 CPT0024890002.WholeExome.RP-1303.bam 28378688179 BAM submitted_aligned CPTAC3 63476b29-20e3-4de9-814d-18983735f909 0d1801067621920e87da9fe61fafa25e {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00846.WXS.N.hg38 C3N-00846 HNSCC WXS blood_normal CPT0024890002 50ca401a-353c-4ac6-b5b1-10ef34bcc849_gdc_realn.bam 38266255737 BAM harmonized CPTAC3 c36d42bd-209c-40ac-bb99-8d89f72277cf 80412548f79ce19c7ca0a9a5f84cb630 {"aliquot_tag": "ALQ_a1e0fd93", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00846.WXS.T C3N-00846 HNSCC WXS tumor CPT0024810009 CPT0024810009.WholeExome.RP-1303.bam 36823359181 BAM submitted_aligned CPTAC3 64e8d0b4-fb20-4dd0-bd0b-42d3a78c01c6 0bb6be6e5b6ba2a97489aa81cde6b3ec {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00846.WXS.T.hg38 C3N-00846 HNSCC WXS tumor CPT0024810009 e0c7b843-344c-45b6-bdf8-824f62f9fd52_gdc_realn.bam 50599897862 BAM harmonized CPTAC3 2ce5839c-ad80-4612-9279-7d359e24dfd8 ae11f620b010af1dde64f3a7e852a1a3 {"aliquot_tag": "ALQ_6426fda", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.MethArray.Green.T C3N-00847 UCEC Methylation_Array tumor CPT0027650009 202163550007_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 96035dac-b1dd-442c-9170-34a862fee567 dbc780c8be72f4ebdcc5b0554a349655 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.MethArray.Red.T C3N-00847 UCEC Methylation_Array tumor CPT0027650009 202163550007_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 e1e3c058-93fc-48b8-822d-e64a9a3b0bdf abc1cceec4291489679a0be02c12c40d {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.miRNA-Seq.S18_L003_R1.T C3N-00847 UCEC miRNA-Seq tumor CPT0027650006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTCAA_S18_L003_R1_001.unaln.bam 176526596 BAM S18_L003_R1 submitted_unaligned CPTAC3 0adf088d-8bc8-452b-9988-f126df6df5c8 90d5d3c1fa377a0142081f429683bef5 {"aliquot_tag": "ALQ_689faf66", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.miRNA-Seq.T.hg38 C3N-00847 UCEC miRNA-Seq tumor CPT0027650006 468d31bf-b629-4639-96e0-261fd3742870_mirnaseq_gdc_realn.bam 191854955 BAM harmonized CPTAC3 ab359813-4f0a-45e9-a2f4-783c53b71a2f 2021562baa01bb820db2d5f0d342de27 {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.RNA-Seq.chimeric.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.chimeric.gdc_realn.bam 36382978 BAM chimeric harmonized CPTAC3 355ddceb-c1ab-4f30-a624-241d762ff5d2 27d6d8eaf81999672614c9512b4a6c05 {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.RNA-Seq.genomic.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.genomic.gdc_realn.bam 9418635827 BAM genomic harmonized CPTAC3 97c8b7b7-7975-42ab-a6a1-bd1eaa6288c2 48299d486e3e075948891e53173d042f {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.RNA-Seq.S6_L002_R1.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4868159696 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 a3c73a24-ad46-4690-a782-0c9de7554f6b dfb31d13b1637fda657a7ce887cddae7 {"aliquot_tag": "ALQ_689faf66", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.RNA-Seq.S6_L002_R2.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R2_001.fastq.gz 5214500174 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 33715f26-60b2-4c5d-994c-00faa767e9be 7f92b7c2bad607c3ceec9057e131b0e9 {"aliquot_tag": "ALQ_689faf66", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.RNA-Seq.transcriptome.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.transcriptome.gdc_realn.bam 11499714813 BAM transcriptome harmonized CPTAC3 549fb9e1-0cdc-4793-8325-202e7b397250 8c6053a34964ef8442e7bdb4993ac894 {"aliquot_tag": "ALQ_689faf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.WGS.N C3N-00847 UCEC WGS blood_normal CPT0027740002 CPT0027740002.WholeGenome.RP-1303.bam 64327564784 BAM submitted_aligned CPTAC3 095599c0-d54e-41e9-80b6-b721e2bb357a ba2337a09b0d875382558ace5993f196 {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00847.WGS.N.hg38 C3N-00847 UCEC WGS blood_normal CPT0027740002 9333c264-b25a-4ad9-8cbc-60d4d961a1e4_gdc_realn.bam 93972603059 BAM harmonized CPTAC3 fbdad251-d8da-4651-9e23-ab9aa7ebdfca 65cdf4a8b855ea825f788cbd17766f3f {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00847.WGS.T C3N-00847 UCEC WGS tumor CPT0027650009 CPT0027650009.WholeGenome.RP-1303.bam 63788150929 BAM submitted_aligned CPTAC3 340e7844-74c1-4de2-905b-4002036794a3 09698480866ec7bb59053b02b2bdcf66 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.WGS.T.hg38 C3N-00847 UCEC WGS tumor CPT0027650009 10bc413b-8a36-4190-9e47-48750c262fa0_gdc_realn.bam 91281051234 BAM harmonized CPTAC3 9d6fba33-07d9-4f69-80af-44adc48f100a ebc8cbf469c114b0f57c0d10c35ad343 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.WXS.N C3N-00847 UCEC WXS blood_normal CPT0027740002 CPT0027740002.WholeExome.RP-1303.bam 22970551963 BAM submitted_aligned CPTAC3 bba06639-667d-4675-808d-fbb4ebe45a64 c10f8133f2f5557f6c1c4d4c7ccceef1 {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00847.WXS.N.hg38 C3N-00847 UCEC WXS blood_normal CPT0027740002 9333c264-b25a-4ad9-8cbc-60d4d961a1e4_gdc_realn.bam 31455348061 BAM harmonized CPTAC3 2c32b668-5200-49de-843a-bb14b3707a90 f0fe536ad595fbd74870d20196af4d00 {"aliquot_tag": "ALQ_99ce916a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00847.WXS.T C3N-00847 UCEC WXS tumor CPT0027650009 CPT0027650009.WholeExome.RP-1303.bam 28107503096 BAM submitted_aligned CPTAC3 727f7adb-b3b8-4cc4-b732-a1c1355ed9d9 b0fcca3c9e1300788050b283011e1932 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00847.WXS.T.hg38 C3N-00847 UCEC WXS tumor CPT0027650009 10bc413b-8a36-4190-9e47-48750c262fa0_gdc_realn.bam 38347634359 BAM harmonized CPTAC3 f418b6a5-909d-4f06-b3b2-da95f81bc611 373938c242e30f0f919657f7de2c2548 {"aliquot_tag": "ALQ_f820b2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.MethArray.Green.T C3N-00848 UCEC Methylation_Array tumor CPT0024130009 202163530120_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7f768be5-1826-4b03-a34f-1be8dadd5d05 d0c2a132b11c5188e5a616adcf4b5965 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.MethArray.Red.T C3N-00848 UCEC Methylation_Array tumor CPT0024130009 202163530120_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 76cd33f5-1a66-42c0-8d91-9e7ed7304b26 ec818dedc7c8d0869fa89caf6a16eb2c {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.miRNA-Seq.S21_L003_R1.T C3N-00848 UCEC miRNA-Seq tumor CPT0024130006 180924_UNC31-K00269_0154_AHWTMLBBXX_GCCAAT_S21_L003_R1_001.unaln.bam 252901822 BAM S21_L003_R1 submitted_unaligned CPTAC3 5f56c26f-133b-4a16-a93c-95ba5024a97e 157f17d357b2b7028f0ab57d21d83435 {"aliquot_tag": "ALQ_cb3270e3", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.miRNA-Seq.T.hg38 C3N-00848 UCEC miRNA-Seq tumor CPT0024130006 bc90c25c-ea60-49db-be31-98c7448dbcda_mirnaseq_gdc_realn.bam 274690623 BAM harmonized CPTAC3 7b5cf3c4-5a3d-45f8-9c32-a94dfd42a929 e53583da36659ce0ce6f0d71a56fe35a {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.RNA-Seq.chimeric.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.chimeric.gdc_realn.bam 80215740 BAM chimeric harmonized CPTAC3 54c058be-e870-49e4-ad67-06dc474162d8 5a8e33f6b76ea5f16d6c4bda7d53bef1 {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.RNA-Seq.genomic.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.genomic.gdc_realn.bam 9212739487 BAM genomic harmonized CPTAC3 2772baef-9d04-4cf6-be5c-f61963c1b314 1855955feb321e78eac4f5ff363ddfa5 {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.RNA-Seq.S3_L001_R1.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4443710715 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 6e88806d-df9b-40b0-9ab9-d5f5265ef294 8b02ff193595023341e4336fef4afc9a {"aliquot_tag": "ALQ_cb3270e3", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.RNA-Seq.S3_L001_R2.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4909078498 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 b8f22b8f-204c-48b4-8147-5c9caf3c2f76 305c3bf3d0ee1b366524ef93b8615b27 {"aliquot_tag": "ALQ_cb3270e3", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.RNA-Seq.transcriptome.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.transcriptome.gdc_realn.bam 11461735095 BAM transcriptome harmonized CPTAC3 037844f4-123a-4a6b-ab1a-41c75e422859 85ba798d1928bc645b2e7fd032ddbc4c {"aliquot_tag": "ALQ_cb3270e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.WGS.N C3N-00848 UCEC WGS blood_normal CPT0024210002 CPT0024210002.WholeGenome.RP-1303.bam 63242209005 BAM submitted_aligned CPTAC3 4c207c78-414e-4af7-8d38-907c63b4422d 6e87904bca3b7759a2819486e9273536 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00848.WGS.N.hg38 C3N-00848 UCEC WGS blood_normal CPT0024210002 1d98bc15-ba29-4594-bc9d-504e70515a19_gdc_realn.bam 92591371345 BAM harmonized CPTAC3 fa7446b0-a818-4096-941d-746e73d363fa 531602828a5dc1d3af8da49bb93d2443 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00848.WGS.T C3N-00848 UCEC WGS tumor CPT0024130009 CPT0024130009.WholeGenome.RP-1303.bam 67452336903 BAM submitted_aligned CPTAC3 b77096d5-295b-4ea7-95a9-59fc84f20cd3 f2c1e1d90ae35aeb91f4880fc6d3c40a {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.WGS.T.hg38 C3N-00848 UCEC WGS tumor CPT0024130009 75c83651-16d9-4099-ac1c-9ac164140aac_gdc_realn.bam 100062541572 BAM harmonized CPTAC3 3a1b5ca0-555b-41e1-bd66-86c2796d69ca 7e0c3267e88b0dd417734f46bec54fe3 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.WXS.N C3N-00848 UCEC WXS blood_normal CPT0024210002 CPT0024210002.WholeExome.RP-1303.bam 21482023458 BAM submitted_aligned CPTAC3 2a32d47a-5ab8-48d7-9992-5f7294ffbfae 0be8e9b040ee53943c916f19c9595e62 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00848.WXS.N.hg38 C3N-00848 UCEC WXS blood_normal CPT0024210002 1d98bc15-ba29-4594-bc9d-504e70515a19_gdc_realn.bam 28938014690 BAM harmonized CPTAC3 e562cec2-f26f-4706-9927-f13ea930d5fa 13321fa164f2bdb1d87edfd3df9ab270 {"aliquot_tag": "ALQ_300b9534", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00848.WXS.T C3N-00848 UCEC WXS tumor CPT0024130009 CPT0024130009.WholeExome.RP-1303.bam 22560526985 BAM submitted_aligned CPTAC3 b2994b0c-76e6-4340-9c95-8ea82b66ef61 1899e8811084819e41fee9ad103831d4 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00848.WXS.T.hg38 C3N-00848 UCEC WXS tumor CPT0024130009 75c83651-16d9-4099-ac1c-9ac164140aac_gdc_realn.bam 30670249888 BAM harmonized CPTAC3 ba0c4492-c816-44ed-9ca0-6c610375514f 023a85eba607df50991b4708cf1d6b49 {"aliquot_tag": "ALQ_5b8d6d72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.MethArray.Green.T C3N-00850 UCEC Methylation_Array tumor CPT0027810009 202184900128_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 959344c3-caae-4445-af34-eddc6b06123f 344f474ec2209c4d96046c279e75e394 {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.MethArray.Red.T C3N-00850 UCEC Methylation_Array tumor CPT0027810009 202184900128_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 6e226ee9-5e52-4e65-8e76-c808313aac63 e53f49cf5872c3d146fc344be750160e {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.miRNA-Seq.S24_L004_R1.T C3N-00850 UCEC miRNA-Seq tumor CPT0027810006 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L004_R1_001.unaln.bam 209131732 BAM S24_L004_R1 submitted_unaligned CPTAC3 4b56f1c4-c8c4-41c3-92ae-0e32a05c4a82 94adaa2d348e5d8963d9cde661c775e1 {"aliquot_tag": "ALQ_a71568d6", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.miRNA-Seq.T.hg38 C3N-00850 UCEC miRNA-Seq tumor CPT0027810006 c78e5127-7ed8-48e1-97e0-fd8a3c8256fe_mirnaseq_gdc_realn.bam 229747083 BAM harmonized CPTAC3 704912f3-cb62-43db-bf19-279bc4af5ec4 22f6c3fef4a5b588bef57c9e2f85899b {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.RNA-Seq.chimeric.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.chimeric.gdc_realn.bam 55243852 BAM chimeric harmonized CPTAC3 d698c030-ff5a-4f2f-a7c2-92154c2584f6 95e681f2786b548d0120fb2e82055d4f {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.RNA-Seq.genomic.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.genomic.gdc_realn.bam 5472842284 BAM genomic harmonized CPTAC3 527ed783-4101-4c41-8e60-873f69a88013 6d1a0252713c5fd1fa0516bb1c724811 {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.RNA-Seq.S19_L005_R1.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2564751211 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 232956d9-bea5-47c0-8fcb-bfbbb8bab7e5 9702089156b6050f5bb69c0952b14295 {"aliquot_tag": "ALQ_a71568d6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.RNA-Seq.S19_L005_R2.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 2785220153 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 23941127-4227-4b4a-82ea-f76fe7062763 f2b25805402c3ce65e4987675b0873dd {"aliquot_tag": "ALQ_a71568d6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.RNA-Seq.transcriptome.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.transcriptome.gdc_realn.bam 5919795180 BAM transcriptome harmonized CPTAC3 44a7c05d-c869-43fb-aa39-e7f2642dfe1f 3f1a75585bfe6071f7c5677f01161c4b {"aliquot_tag": "ALQ_a71568d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.WGS.N C3N-00850 UCEC WGS blood_normal CPT0027890002 CPT0027890002.WholeGenome.RP-1303.bam 63768086170 BAM submitted_aligned CPTAC3 ee62a659-d8fa-4706-9ba9-9ec933ed8b24 b47b36e690c6f9800278a24bc2dc6720 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00850.WGS.N.hg38 C3N-00850 UCEC WGS blood_normal CPT0027890002 9872eab8-63d3-4882-877b-7b4de75bba37_gdc_realn.bam 93059377849 BAM harmonized CPTAC3 ac12d7d2-d6d3-454b-aa22-827c6b7a49a9 fd1b7b8faff6edba45af98316f1141b1 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00850.WGS.T C3N-00850 UCEC WGS tumor CPT0027810009 CPT0027810009.WholeGenome.RP-1303.bam 58140141285 BAM submitted_aligned CPTAC3 d332e9d9-559e-4080-9c0f-e0e5bb10109c 2744f7cd793aa80f30ce02b25c560ed9 {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.WGS.T.hg38 C3N-00850 UCEC WGS tumor CPT0027810009 850bd0cf-dd68-40b6-a6b6-83e42e76fd32_gdc_realn.bam 84473691467 BAM harmonized CPTAC3 76e8c02d-65d4-4ff0-bad5-5b0393d401f9 b84dcd32705055fe986c08e704bb2ced {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.WXS.N C3N-00850 UCEC WXS blood_normal CPT0027890002 CPT0027890002.WholeExome.RP-1303.bam 26162656821 BAM submitted_aligned CPTAC3 e7b4e3d1-b988-4a96-a361-2fa1698e1676 2a348b953505fc1b69568dab12a03323 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00850.WXS.N.hg38 C3N-00850 UCEC WXS blood_normal CPT0027890002 9872eab8-63d3-4882-877b-7b4de75bba37_gdc_realn.bam 36316463640 BAM harmonized CPTAC3 513b27f2-8ec9-45d2-bcd4-f733bc617f3b f57265f2872656500c70a9672441b4c6 {"aliquot_tag": "ALQ_9008e70e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00850.WXS.T C3N-00850 UCEC WXS tumor CPT0027810009 CPT0027810009.WholeExome.RP-1303.bam 26686627715 BAM submitted_aligned CPTAC3 f2f2bd5a-3cab-4f68-92cc-945f1c2e2fac b2617bd0f12ee5f9dca3ab3cf5687280 {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00850.WXS.T.hg38 C3N-00850 UCEC WXS tumor CPT0027810009 850bd0cf-dd68-40b6-a6b6-83e42e76fd32_gdc_realn.bam 36640916648 BAM harmonized CPTAC3 35036101-2e5d-4d47-bd7c-3eb638bcf6a2 c1df9d3d0bb992d1a8a0bbe7605d017d {"aliquot_tag": "ALQ_37aa7547", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_470140a3.MethArray.Green.T C3N-00852 CCRCC Methylation_Array tumor CPT0024650012 204367400087_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ca0bb472-0422-4b69-bbac-951412dbea0d 725ee8ec3320f0e3368de0ac6906c055 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_470140a3.MethArray.Red.T C3N-00852 CCRCC Methylation_Array tumor CPT0024650012 204367400087_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 34890c0e-b83c-4186-8578-6ffebdc412c7 c8b97bd626cf162d4b58dc7b852f0736 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_470140a3.WGS.T C3N-00852 CCRCC WGS tumor CPT0024650012 CPT0024650012.WholeGenome.RP-2158.bam 23980027561 BAM submitted_aligned CPTAC3 1edd82c7-dbb7-45a5-846b-761ba0491e78 439af316cd22cf69e1466c835b4d0f01 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_470140a3.WGS.T.hg38 C3N-00852 CCRCC WGS tumor CPT0024650012 e57af370-4c03-43d2-b98e-7a11f2e7cc84_wgs_gdc_realn.bam 73485079338 BAM harmonized CPTAC3 d84f4cdc-695e-4a35-96ba-e1f912f8a3bd 9803a1eae7c12f153333eb83c321c8c7 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_470140a3.WXS.T C3N-00852 CCRCC WXS tumor CPT0024650012 CPT0024650012.WholeExome.RP-1303.bam 21611501385 BAM submitted_aligned CPTAC3 3e21a8a7-29c7-4281-b40f-1428af5758bb 1d9d1d3ebad3436f2b8c7bb11ce46b63 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_470140a3.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024650012 e57af370-4c03-43d2-b98e-7a11f2e7cc84_wxs_gdc_realn.bam 29369560222 BAM harmonized CPTAC3 a34a9aee-6b72-459d-9b60-43133fabfe43 559055b8b579fa9ef4ed998f9f6426d1 {"aliquot_tag": "DUP_470140a3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_8e68d2ba.miRNA-Seq.S34_L005_R1.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024660009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L005_R1_001.unaln.bam 373067205 BAM S34_L005_R1 submitted_unaligned CPTAC3 f4ab2c44-6466-4337-b394-e1d16a491b08 82675aa511b44b507d1ca7d4d1839e21 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_8e68d2ba.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024660009 9afc23a1-f750-45df-ab69-9a115b50bd1c_mirnaseq_gdc_realn.bam 404654753 BAM harmonized CPTAC3 3ac59a6d-899d-450c-aff6-d34e727cee6e 6e806cf37e60b6767d643809e7d3b007 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_8e68d2ba.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.chimeric.gdc_realn.bam 301857247 BAM chimeric harmonized CPTAC3 38f41fbb-d91f-482a-adb1-09f7b9229b85 a3d9d5aeac256fb89df858affe24a48d {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_8e68d2ba.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.genomic.gdc_realn.bam 8660389876 BAM genomic harmonized CPTAC3 1cd48568-bdea-4d81-a3a2-74ac1cb167b5 ffee41b780f66af954ec6879e181c910 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_8e68d2ba.RNA-Seq.S4_L001_R1.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R1_001.fastq.gz 4104002160 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 d5c8ee92-cf50-456f-aa96-2ef73b985bfe 8a3ff5e4719aa9a377422efbcba49a26 {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_8e68d2ba.RNA-Seq.S4_L001_R2.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R2_001.fastq.gz 4969739181 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 12ecd8ec-5fc6-46ac-b79e-9b1e3918d8a0 bea9e64e89c995875e6d13e7fd4aba0d {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_8e68d2ba.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.transcriptome.gdc_realn.bam 11698579712 BAM transcriptome harmonized CPTAC3 f4a172d6-889e-4327-9ede-941200db6871 058094644ce041b02ff3a517c1a8c47b {"aliquot_tag": "DUP_8e68d2ba", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_a13a73.MethArray.Green.T C3N-00852 CCRCC Methylation_Array tumor CPT0024660012 204372030071_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 cc503702-9b12-481f-909e-43c448745025 416a2791847affd1b37154b70952c4cf {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_a13a73.MethArray.Red.T C3N-00852 CCRCC Methylation_Array tumor CPT0024660012 204372030071_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 43a39ed0-5b25-4b17-905e-e2a0fe895455 516afded624fe5652b65693a2632b506 {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_a13a73.WGS.T C3N-00852 CCRCC WGS tumor CPT0024660012 CPT0024660012.WholeGenome.RP-2158.bam 25566534105 BAM submitted_aligned CPTAC3 b211f9d4-adbe-4416-8f69-96f3b79e4947 15d783c6e41d8c0eaee87223ca97c404 {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_a13a73.WGS.T.hg38 C3N-00852 CCRCC WGS tumor CPT0024660012 00d1ca04-01fa-48e2-a122-12a1a4f070c1_wgs_gdc_realn.bam 77749785100 BAM harmonized CPTAC3 99f64d02-cceb-4da8-831d-05ab2431287d a735c7edd81044ff8a7594d4f85da51c {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_a13a73.WXS.T C3N-00852 CCRCC WXS tumor CPT0024660012 CPT0024660012.WholeExome.RP-1303.bam 24736057787 BAM submitted_aligned CPTAC3 bc12caf2-7e61-4eeb-92e2-b0d9f7a28b5d 64b626d5c127ca8696d57d43108dce27 {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_a13a73.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024660012 00d1ca04-01fa-48e2-a122-12a1a4f070c1_wxs_gdc_realn.bam 34055787473 BAM harmonized CPTAC3 65473bdd-b9cd-4529-a57d-f824b2778a98 de10bd09d541c81a4e3759dcf91e40ff {"aliquot_tag": "DUP_a13a73", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_c9c8a86a.miRNA-Seq.S33_L005_R1.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024650009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGGCC_S33_L005_R1_001.unaln.bam 242478790 BAM S33_L005_R1 submitted_unaligned CPTAC3 a564cb2a-9ce1-4773-98cc-ded738f05ba3 cf2c496ff9753f5852aef3f68db9bf03 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_c9c8a86a.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024650009 a20a79b2-4125-4f51-a9fc-f0192d6f913b_mirnaseq_gdc_realn.bam 265851027 BAM harmonized CPTAC3 a1f10df5-6c34-4b87-9717-9a91f3b20de7 d2e71bb55c3a2060ad49421e958a5eb1 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_c9c8a86a.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.chimeric.gdc_realn.bam 190263159 BAM chimeric harmonized CPTAC3 9ef10366-b8e7-42cf-a41b-210dc1b7f025 65f8fb9db7aac43b7a7d70b1d995fd03 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_c9c8a86a.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.genomic.gdc_realn.bam 8506548884 BAM genomic harmonized CPTAC3 6b951d1b-2f84-4a7b-937b-d16235dbe2d0 83d2aae3a6c5d118bad57d99f54cdf1c {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_c9c8a86a.RNA-Seq.S45_L008_R1.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R1_001.fastq.gz 3984452183 FASTQ S45_L008_R1 submitted_unaligned CPTAC3 5d01f7ba-95a5-4f59-a2bd-35bd9eac516d 89877a623d63dae7d9e168c4c32327a8 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_c9c8a86a.RNA-Seq.S45_L008_R2.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R2_001.fastq.gz 4761749129 FASTQ S45_L008_R2 submitted_unaligned CPTAC3 17c99bea-d5f7-4049-8890-9ead17cddf4f f5cdc874090034b1241817712759bb40 {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S45", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.DUP_c9c8a86a.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.transcriptome.gdc_realn.bam 11400714918 BAM transcriptome harmonized CPTAC3 d8666eae-343c-42b3-990c-b7f3e93a4e4f ee3dfb6b37bd7ed7a69ef6e81c7f718e {"aliquot_tag": "DUP_c9c8a86a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.MethArray.Green.A C3N-00852 CCRCC Methylation_Array tissue_normal CPT0024680009 203027380024_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c455d9b4-e27f-430d-953e-ab94527dea9a c0d286fab3cb90b3aef856f81a9f5efa {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.MethArray.Green.T C3N-00852 CCRCC Methylation_Array tumor CPT0024670009 202176290147_R01C01_Grn.idat 13676215 IDAT Green NA CPTAC3 debb3bd8-aca6-411a-a4b8-c07a3d8c1526 8f6923a43a15b2d283f452d8700dc460 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.MethArray.Red.A C3N-00852 CCRCC Methylation_Array tissue_normal CPT0024680009 203027380024_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 dc64a0a2-277f-4f0f-beaa-aaac6bbd40ce 1d216eaf8347200210d7adfb5af8f8d4 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.MethArray.Red.T C3N-00852 CCRCC Methylation_Array tumor CPT0024670009 202176290147_R01C01_Red.idat 13676215 IDAT Red NA CPTAC3 1bacbb16-3eb6-4dbb-a247-5e9dc90b6d10 1cdca9eb357e24ed4d9d1481a9e657e7 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.miRNA-Seq.A.hg38 C3N-00852 CCRCC miRNA-Seq tissue_normal CPT0024680013 c8514bcf-57db-442b-b76d-8657982c6dc8_mirnaseq_gdc_realn.bam 270536571 BAM harmonized CPTAC3 d922c735-6034-46b8-a5df-2e9d40fdea43 16e5a6e6e865e5bb02f77489ae2b9024 {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.miRNA-Seq.S11_L006_R1.A C3N-00852 CCRCC miRNA-Seq tissue_normal CPT0024680013 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L006_R1_001.unaln.bam 246666855 BAM S11_L006_R1 submitted_unaligned CPTAC3 2ae9b9c3-e0e9-44b4-8c04-215fc797e7aa 9d85fa27e0e77130c42d1d120deaa129 {"aliquot_tag": "ALQ_c896b484", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.miRNA-Seq.S19_L003_R1.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024670006 180924_UNC31-K00269_0154_AHWTMLBBXX_GATCAG_S19_L003_R1_001.unaln.bam 214130020 BAM S19_L003_R1 submitted_unaligned CPTAC3 f3a5550a-175a-431e-a5ae-61c19addba72 3fded2c9887df1a826de4b7c54a1cb6b {"aliquot_tag": "ALQ_23b7e69b", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024670006 0567a339-a1ec-4a7e-a245-8574a9091cc1_mirnaseq_gdc_realn.bam 230942340 BAM harmonized CPTAC3 0f79ee27-e217-42bf-9b65-98a0a25f6f3f 24e0df55f364897ab376c6111fbb3011 {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.RNA-Seq.chimeric.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.chimeric.gdc_realn.bam 111124618 BAM chimeric harmonized CPTAC3 69783ff6-50ca-4149-9ecf-5d2af8d2248d 131d9c725d52d066aa898c2f8fda85f4 {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.chimeric.gdc_realn.bam 85179202 BAM chimeric harmonized CPTAC3 42ca7646-616f-48ed-88d2-f9c43e7b3798 1d901b87ff382964a212493d844b9388 {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.RNA-Seq.genomic.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.genomic.gdc_realn.bam 9581281489 BAM genomic harmonized CPTAC3 9cc62824-4b8a-4286-b721-d88c07093058 238b2b266d63f65abea11438e68a9015 {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.genomic.gdc_realn.bam 8555543802 BAM genomic harmonized CPTAC3 853f47ef-c22d-4d1a-ba52-dcb4abb6a602 aa3448dd5642e7d9ea0d6bde2371ca3a {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.RNA-Seq.S40_L008_R1.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R1_001.fastq.gz 3923360468 FASTQ S40_L008_R1 submitted_unaligned CPTAC3 98cbfe35-2028-4b35-b294-7908bd384217 dc5e746d8a140cd9d4533e5e31d48094 {"aliquot_tag": "ALQ_c896b484", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.RNA-Seq.S40_L008_R2.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R2_001.fastq.gz 4438310010 FASTQ S40_L008_R2 submitted_unaligned CPTAC3 3b929f29-a942-4894-8250-1f29c8bf68a2 826c76c31e7f58ea989f891f6f463ca9 {"aliquot_tag": "ALQ_c896b484", "sample": "S40", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.RNA-Seq.S4_L001_R1.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4265437093 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 9f137d4e-815b-42a1-9cd9-e937abeebbab aa59da8caae7f02dcb0ff5cc1ed6cc30 {"aliquot_tag": "ALQ_23b7e69b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.RNA-Seq.S4_L001_R2.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4657233704 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 14c88080-e7f7-4005-84a8-08b7c0bbdb1a 5300b7587d3686b62ec9a5256f3fc3a5 {"aliquot_tag": "ALQ_23b7e69b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.RNA-Seq.transcriptome.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.transcriptome.gdc_realn.bam 9088795037 BAM transcriptome harmonized CPTAC3 3f088125-75db-42e1-bd50-b6fe452d4948 f39538202afca9ec468df5bfd30110ed {"aliquot_tag": "ALQ_c896b484", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.transcriptome.gdc_realn.bam 12112016023 BAM transcriptome harmonized CPTAC3 a8dd08e7-599f-4f5b-aa3a-0f479a6e9b2e 52a483ad601539e6984be16242770831 {"aliquot_tag": "ALQ_23b7e69b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.WGS.A C3N-00852 CCRCC WGS tissue_normal CPT0024680009 CPT0024680009.WholeGenome.RP-1303.bam 82131149308 BAM submitted_aligned CPTAC3 e4e32496-13d3-4eef-88d0-f12b14dc1032 1807bed71baad904acb2cef1b5f9f8e1 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.WGS.A.hg38 C3N-00852 CCRCC WGS tissue_normal CPT0024680009 bad0565e-7226-4406-b438-ad25656f1243_wgs_gdc_realn.bam 119189244258 BAM harmonized CPTAC3 197f9648-e218-4632-a40b-f93da885c977 1bda52e528bc66105ed9cd5880380168 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.WGS.N C3N-00852 CCRCC WGS blood_normal CPT0024740002 CPT0024740002.WholeGenome.RP-1303.bam 63963861586 BAM submitted_aligned CPTAC3 0903ff9e-a8cc-4ced-9d03-f8d018191fff 765348dd5f3f1cc0ed6084cd192c44de {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00852.WGS.N.hg38 C3N-00852 CCRCC WGS blood_normal CPT0024740002 85fedd41-5ca0-47c2-8d24-64e0c067178b_gdc_realn.bam 93250731753 BAM harmonized CPTAC3 f05c6f2a-62b3-4677-aa64-202a56044291 e850a4bc075e90545e4d3f392a64156e {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00852.WGS.T C3N-00852 CCRCC WGS tumor CPT0024670009 CPT0024670009.WholeGenome.RP-1303.bam 62216815540 BAM submitted_aligned CPTAC3 aa4f904c-ac25-43ac-870e-0359500ecab3 a72b05f9cc0c8296c687fb175ce461da {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.WGS.T.hg38 C3N-00852 CCRCC WGS tumor CPT0024670009 f9ac248b-a3c7-47f9-898e-8322e72b6b48_gdc_realn.bam 90986935611 BAM harmonized CPTAC3 860a20e9-ac3f-4648-9e59-9412f3b0eebb 908a855b06db225c4da05fd0afb61171 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.WXS.A C3N-00852 CCRCC WXS tissue_normal CPT0024680009 CPT0024680009.WholeExome.RP-1303.bam 27692691972 BAM submitted_aligned CPTAC3 792e0d30-95cb-4b50-9e32-b0ca32355957 3413df58a0cf11b98372b37449d4a408 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.WXS.A.hg38 C3N-00852 CCRCC WXS tissue_normal CPT0024680009 bad0565e-7226-4406-b438-ad25656f1243_wxs_gdc_realn.bam 37347719814 BAM harmonized CPTAC3 6635c748-3d17-4786-94f9-af50fd67c920 a4ba4e09c12fae1fbc7dc8c7a74c8125 {"aliquot_tag": "ALQ_31586cdb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00852.WXS.N C3N-00852 CCRCC WXS blood_normal CPT0024740002 CPT0024740002.WholeExome.RP-1303.bam 23068087243 BAM submitted_aligned CPTAC3 55de5312-e9d9-4d8e-b772-baa4e90d84b4 33158780b510ccd293cae20b9e232509 {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00852.WXS.N.hg38 C3N-00852 CCRCC WXS blood_normal CPT0024740002 85fedd41-5ca0-47c2-8d24-64e0c067178b_gdc_realn.bam 31571603166 BAM harmonized CPTAC3 9107d71e-50fa-4099-aff1-40319ef93b2f ea3d4adbbe3666b6688dcb4381c4d655 {"aliquot_tag": "ALQ_a8268bf7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00852.WXS.T C3N-00852 CCRCC WXS tumor CPT0024670009 CPT0024670009.WholeExome.RP-1303.bam 20682126060 BAM submitted_aligned CPTAC3 c5b1b709-a52e-474c-83d3-e5bef1c37351 ebf74f4c230bb371ee0dd02b3d7e8a86 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00852.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024670009 f9ac248b-a3c7-47f9-898e-8322e72b6b48_gdc_realn.bam 28220494250 BAM harmonized CPTAC3 6cc1f066-bd5a-40e4-931e-c0921cc4dc0e eadd4283f2d36608bfd97e344b23eea5 {"aliquot_tag": "ALQ_b308fb0a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.MethArray.Green.T C3N-00857 HNSCC Methylation_Array tumor CPT0094350010 202234380099_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 59d880f1-2082-46af-a4c6-7eb51925d43f cd34162ab23239db677bf9304e66a1f9 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.MethArray.Red.T C3N-00857 HNSCC Methylation_Array tumor CPT0094350010 202234380099_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 d0f6f6a1-4520-41bf-9dd8-ebd5e8743fc7 7f3b2ef62d7b105ae69de58ad6c441ea {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.miRNA-Seq.S36_L007_R1.T C3N-00857 HNSCC miRNA-Seq tumor CPT0094350007 180828_UNC32-K00270_0112_AHWTLNBBXX_CACCGG_S36_L007_R1_001.unaln.bam 210269048 BAM S36_L007_R1 submitted_unaligned CPTAC3 48acb609-a84c-48dd-81a3-928324118d77 c2b20f81faaff6cbfe33b51d896bdadb {"aliquot_tag": "ALQ_23d70888", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.miRNA-Seq.T.hg38 C3N-00857 HNSCC miRNA-Seq tumor CPT0094350007 c44d7d46-e227-468a-9b5b-30887ba7a6ad_mirnaseq_gdc_realn.bam 237951024 BAM harmonized CPTAC3 e9ea7136-543b-44dd-9765-d2deb6561878 e2b5300adc8408208265de934bf62e8c {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.RNA-Seq.chimeric.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.chimeric.gdc_realn.bam 43135948 BAM chimeric harmonized CPTAC3 00d0589d-575f-4542-91c3-05083aef9c74 9a62147a87d0d66f5bef3077c1cf4db3 {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.RNA-Seq.genomic.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.genomic.gdc_realn.bam 10452798427 BAM genomic harmonized CPTAC3 7afae0b2-d6c7-460d-855a-7f3103d38f7e 88805e259858f08040a2d02d9d38414f {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.RNA-Seq.S10_L003_R1.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R1_001.fastq.gz 4883453334 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 f2f1e7cc-e192-4e23-adef-69eb17a72ce0 630139b9951fd04b1447e85fe19cb3f1 {"aliquot_tag": "ALQ_23d70888", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.RNA-Seq.S10_L003_R2.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R2_001.fastq.gz 5368333581 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 c5211e48-be82-4d7a-b5a4-2aa8f3c94622 39f1daeba064cc6881c194d6783d58ec {"aliquot_tag": "ALQ_23d70888", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.RNA-Seq.transcriptome.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.transcriptome.gdc_realn.bam 12940249615 BAM transcriptome harmonized CPTAC3 d9261b28-d523-4940-ba4e-ceffdcd61350 233f50f895a1c7f75b63fb5794950fcc {"aliquot_tag": "ALQ_23d70888", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.WGS.N C3N-00857 HNSCC WGS blood_normal CPT0094410002 CPT0094410002.WholeGenome.RP-1303.bam 63264032177 BAM submitted_aligned CPTAC3 c0d16dc7-5a4d-4ccc-b8ed-2024c70163f2 4f7a6b6929b168202b43bccef8ca595b {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00857.WGS.N.hg38 C3N-00857 HNSCC WGS blood_normal CPT0094410002 ba31c45d-375b-4fc2-99dc-f4ae4dc7f11e_wgs_gdc_realn.bam 93711501307 BAM harmonized CPTAC3 5f50bf28-f365-48d9-b917-c4a7fa2febc1 19f0f8eef8816467334d5b2d8b74e99b {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00857.WGS.T C3N-00857 HNSCC WGS tumor CPT0094350010 CPT0094350010.WholeGenome.RP-1303.bam 64401502848 BAM submitted_aligned CPTAC3 9c0e00e0-f770-4c3f-b414-414ad966f71a 1d001e118c8cdb0c525ccc6843e30671 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.WGS.T.hg38 C3N-00857 HNSCC WGS tumor CPT0094350010 3a6fc1b2-040d-49e5-8d6c-dc393a07ce70_wgs_gdc_realn.bam 93727390521 BAM harmonized CPTAC3 f6de3537-9a0e-4570-9c08-5114018c3083 0256a3a06733a834e88fd1a4479018e1 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.WXS.N C3N-00857 HNSCC WXS blood_normal CPT0094410002 CPT0094410002.WholeExome.RP-1303.bam 41577025845 BAM submitted_aligned CPTAC3 35e496bb-b1d0-49f2-82de-7c1a337fdc0b ad16d39086d4ee1f3d63eeafbd8eec74 {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00857.WXS.N.hg38 C3N-00857 HNSCC WXS blood_normal CPT0094410002 ba31c45d-375b-4fc2-99dc-f4ae4dc7f11e_wxs_gdc_realn.bam 57203535624 BAM harmonized CPTAC3 8234d619-3cd8-4392-94ac-3cc201b27bd1 006972269ee6d145e492326861a0049e {"aliquot_tag": "ALQ_bb386a7f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00857.WXS.T C3N-00857 HNSCC WXS tumor CPT0094350010 CPT0094350010.WholeExome.RP-1303.bam 43039319168 BAM submitted_aligned CPTAC3 ed29a55d-c6d2-4ff5-a934-8eacf8cc3980 243efcbab6c085faf28bd15d1111a8e3 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00857.WXS.T.hg38 C3N-00857 HNSCC WXS tumor CPT0094350010 3a6fc1b2-040d-49e5-8d6c-dc393a07ce70_wxs_gdc_realn.bam 60148926330 BAM harmonized CPTAC3 16242d95-b145-4204-8fbf-0d3190fa9745 06aa32074da06506319df71d978795f7 {"aliquot_tag": "ALQ_a4a8ac6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.MethArray.Green.T C3N-00858 UCEC Methylation_Array tumor CPT0078320010 202184900110_R03C01_Grn.idat 13676256 IDAT Green NA CPTAC3 347e5dec-da9c-4d46-82fc-199ca59aa347 4205be97c9a8e52c31da727fa21bc591 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.MethArray.Red.T C3N-00858 UCEC Methylation_Array tumor CPT0078320010 202184900110_R03C01_Red.idat 13676256 IDAT Red NA CPTAC3 2e5a092f-0adc-4e78-93a0-04931595eafb b3fcd3a061a1d8f698369e8dedfe7682 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.miRNA-Seq.A.hg38 C3N-00858 UCEC miRNA-Seq tissue_normal CPT0078360006 619c315e-d577-4cda-80d9-b9a398af35a8_mirnaseq_gdc_realn.bam 262102901 BAM harmonized CPTAC3 bceb8a21-59be-4c22-84db-5d83f4266268 98b3c3b3a1bb6de469201a8ab8bbcae9 {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.miRNA-Seq.S12_L006_R1.A C3N-00858 UCEC miRNA-Seq tissue_normal CPT0078360006 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L006_R1_001.unaln.bam 226658774 BAM S12_L006_R1 submitted_unaligned CPTAC3 7b38ef1e-6b7f-426f-b424-3d5e85825593 b93b473968e1832b9fc2783c98401bda {"aliquot_tag": "ALQ_c15a3a88", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.miRNA-Seq.S12_L008_R1.T C3N-00858 UCEC miRNA-Seq tumor CPT0078320007 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L008_R1_001.unaln.bam 169888817 BAM S12_L008_R1 submitted_unaligned CPTAC3 3b0dad1b-74dc-44fe-b05e-24e991e5f1ce 5aab25fc5840f05539e6d09f466fb90c {"aliquot_tag": "ALQ_43ddacde", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.miRNA-Seq.T.hg38 C3N-00858 UCEC miRNA-Seq tumor CPT0078320007 768989ed-fb2e-457c-8e1c-ed8f89b3b53d_mirnaseq_gdc_realn.bam 187698807 BAM harmonized CPTAC3 d3bba150-cc5e-4f37-860c-6ef37b9971ba 8b5bde3a865f6621637feacada402c4c {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.chimeric.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.chimeric.gdc_realn.bam 73316720 BAM chimeric harmonized CPTAC3 5fc8108e-73df-4c32-b061-3a5548d46e08 878a148030663cc1a039f3d09fb0c074 {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.RNA-Seq.chimeric.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.chimeric.gdc_realn.bam 109851687 BAM chimeric harmonized CPTAC3 3576c0a1-9a71-430d-b922-e2c5cf21e785 5b5685361866cc45fa935c3cab554b7a {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.chimeric.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.chimeric.gdc_realn.bam 123692825 BAM chimeric harmonized CPTAC3 024a2932-c535-4ac6-833f-cd2a09b6b03a ec5dd4ccc141f2568299ba026f983d58 {"aliquot_tag": "ALQ_143197", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.genomic.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.genomic.gdc_realn.bam 8934640199 BAM genomic harmonized CPTAC3 b90327f9-d9aa-4091-b7c2-732518c8bef5 0cc7d71e3045db953d692c08253c8318 {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.RNA-Seq.genomic.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.genomic.gdc_realn.bam 7837783210 BAM genomic harmonized CPTAC3 0b31f5cf-52ce-4875-abc1-1b7aa04b092a c0b33e5a9af5b71a5c985b41328509ca {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.genomic.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.genomic.gdc_realn.bam 5582539715 BAM genomic harmonized CPTAC3 0772a03c-a7f6-400e-9274-54daedde108d 8c28f28f04d7eaef203b174c95ed05ee {"aliquot_tag": "ALQ_143197", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.S18_L006_R1.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R1_001.fastq.gz 3764827164 FASTQ S18_L006_R1 submitted_unaligned CPTAC3 1a17a35c-466d-4a23-aee2-04b09c784e2a 8c642df0eb3585f5a0b74dee8b807355 {"aliquot_tag": "ALQ_43ddacde", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.S18_L006_R2.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R2_001.fastq.gz 3980424909 FASTQ S18_L006_R2 submitted_unaligned CPTAC3 1a561b74-0af0-4d52-9288-9fa08c5d2729 f2fa91083756613edddd96ce3db103d5 {"aliquot_tag": "ALQ_43ddacde", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.S41_L008_R1.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R1_001.fastq.gz 4086730397 FASTQ S41_L008_R1 submitted_unaligned CPTAC3 2bb35dfa-8915-4f44-a7f3-309bee055f37 28c00169301f5222020b2da31b0ebe68 {"aliquot_tag": "ALQ_c15a3a88", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.RNA-Seq.S41_L008_R2.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R2_001.fastq.gz 4447801011 FASTQ S41_L008_R2 submitted_unaligned CPTAC3 c3a727a2-3121-46f4-8640-749db0e909dc 43876bcaa405ec110df3aad851ac670c {"aliquot_tag": "ALQ_c15a3a88", "sample": "S41", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.RNA-Seq.S91_R1.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R1_001.fastq.gz 3469536062 FASTQ S91_R1 submitted_unaligned CPTAC3 eb12799c-ad09-4416-b018-8d6396a44280 611c53b5b5869105b9ec8d00d4485c2d {"aliquot_tag": "ALQ_143197", "sample": "S91", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.S91_R2.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R2_001.fastq.gz 3627597888 FASTQ S91_R2 submitted_unaligned CPTAC3 a75cbac1-bbc0-4104-b43b-09d7ffc50d81 bb70a5160134d76f5bc7d3d77f8c89a5 {"aliquot_tag": "ALQ_143197", "sample": "S91", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.transcriptome.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.transcriptome.gdc_realn.bam 10877374454 BAM transcriptome harmonized CPTAC3 c8af88a7-895a-485d-986b-54198afecb78 be88f5a70f56ad22bbee58edf3249b7f {"aliquot_tag": "ALQ_c15a3a88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.RNA-Seq.transcriptome.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.transcriptome.gdc_realn.bam 9282282929 BAM transcriptome harmonized CPTAC3 36438c2c-5343-4c18-8cd7-3051b2148af4 3e5f9b6f5d87574f741cb06af85a5850 {"aliquot_tag": "ALQ_43ddacde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.RNA-Seq.transcriptome.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.transcriptome.gdc_realn.bam 3498167891 BAM transcriptome harmonized CPTAC3 2536a3d3-2f9d-402f-bb0e-8d896017d8e0 4bfa050d95e15ba49cd125991b8c59d5 {"aliquot_tag": "ALQ_143197", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.WGS.A C3N-00858 UCEC WGS tissue_normal CPT0078360009 CPT0078360009.WholeGenome.RP-1303.bam 56506640424 BAM submitted_aligned CPTAC3 7434aa4c-cd17-4080-9e89-f5ca44b1e430 1b65e1cf66a7d202c6ba8708c58f30f9 {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.WGS.A.hg38 C3N-00858 UCEC WGS tissue_normal CPT0078360009 6c7c0305-35b0-42c0-8533-44b170b53ccd_wgs_gdc_realn.bam 81540496024 BAM harmonized CPTAC3 e3e72f8f-399d-46f6-b469-94fec8e47aac 22dc4bc3eeeaa80200fb7823134c7528 {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.WGS.N C3N-00858 UCEC WGS blood_normal CPT0078420002 CPT0078420002.WholeGenome.RP-1303.bam 74524744064 BAM submitted_aligned CPTAC3 e9b8ebee-daff-405b-a17e-33f230c39e80 ba9cdec7cf3dd7ae413528f6d7430a31 {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00858.WGS.N.hg38 C3N-00858 UCEC WGS blood_normal CPT0078420002 bdc38930-0dd6-4f39-a41d-56574c4b93ea_gdc_realn.bam 109505995795 BAM harmonized CPTAC3 c00380d4-0e17-4a1f-afdf-f94329078eaf 6383219f9085007bd2f92aef738bf7bf {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00858.WGS.T C3N-00858 UCEC WGS tumor CPT0078320010 CPT0078320010.WholeGenome.RP-1303.bam 90430492119 BAM submitted_aligned CPTAC3 5fa4be34-928e-48c1-b986-d2df0adf5903 1571a72bb77b3a9724bc43dc333d5fd0 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.WGS.T.hg38 C3N-00858 UCEC WGS tumor CPT0078320010 b93f9712-3ac1-4bf5-b4c0-a3f584dc872a_gdc_realn.bam 139853903027 BAM harmonized CPTAC3 4d80e3cb-84e1-405a-a6e0-3e22eef87513 1d84e46d5d5bf632e98db184458e3f4e {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.WXS.A C3N-00858 UCEC WXS tissue_normal CPT0078360009 CPT0078360009.WholeExome.RP-1303.bam 33183152116 BAM submitted_aligned CPTAC3 1a31fe5f-b895-46a4-9b30-5f9533d97f77 d08e3b3ae08026f09952f5c641d4095f {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.WXS.A.hg38 C3N-00858 UCEC WXS tissue_normal CPT0078360009 6c7c0305-35b0-42c0-8533-44b170b53ccd_wxs_gdc_realn.bam 44629769569 BAM harmonized CPTAC3 21c4af58-556c-434f-aec4-745057a9e2c0 d813f2a59bc33fce7b398367acea905a {"aliquot_tag": "ALQ_51e52719", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00858.WXS.N C3N-00858 UCEC WXS blood_normal CPT0078420002 CPT0078420002.WholeExome.RP-1303.bam 26625504862 BAM submitted_aligned CPTAC3 47249bc4-3efc-4e44-970a-0542ab7f1baf 7368743a822e7706d7eec62cebcba919 {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00858.WXS.N.hg38 C3N-00858 UCEC WXS blood_normal CPT0078420002 bdc38930-0dd6-4f39-a41d-56574c4b93ea_gdc_realn.bam 35790917061 BAM harmonized CPTAC3 310f8751-c639-4b2e-86a2-5599a7e37d9d 14fddc29d0696a0a81d0fa23dc5ed7d3 {"aliquot_tag": "ALQ_2eb268e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00858.WXS.T C3N-00858 UCEC WXS tumor CPT0078320010 CPT0078320010.WholeExome.RP-1303.bam 28147519369 BAM submitted_aligned CPTAC3 6fa84d36-167b-43b7-b63d-5a6acc4ef00f 3d6c6fc0e330075cdb209d66b06da1f5 {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00858.WXS.T.hg38 C3N-00858 UCEC WXS tumor CPT0078320010 b93f9712-3ac1-4bf5-b4c0-a3f584dc872a_gdc_realn.bam 39020899393 BAM harmonized CPTAC3 abf58596-7554-4be7-bd99-2b0e02a40d41 8b09fd8b8b544235ece7f6ad150111dc {"aliquot_tag": "ALQ_c4a2083c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00859.MethArray.Green.T C3N-00859 UCEC Methylation_Array tumor CPT0116010007 203219650100_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2cfef16b-7b91-4d5a-9d4d-7200c6e9c605 cc8bf3baca71e370bc451b9caaebbb61 {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.MethArray.Red.T C3N-00859 UCEC Methylation_Array tumor CPT0116010007 203219650100_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 67cd971b-833d-4916-8747-7e4932cef653 8cfde412164fbb8df2385b8d7923a6d4 {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.miRNA-Seq.A.hg38 C3N-00859 UCEC miRNA-Seq tissue_normal CPT0116040009 d15ef2c3-3683-4e72-a21a-3e64ccdad6dd_mirnaseq_gdc_realn.bam 214842095 BAM harmonized CPTAC3 cd523a00-c8c7-400e-a499-f8f1747f348a d66074f053a668eda2febf8ad9802b8b {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.miRNA-Seq.S42_L003_R1.T C3N-00859 UCEC miRNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0176_AHYGLVBBXX_TAATCG_S42_L003_R1_001.unaln.bam 198072320 BAM S42_L003_R1 submitted_unaligned CPTAC3 d2f17c51-83fa-46e4-83fc-3c316b081219 24eb4b6e0c6ca4a1b64e478c00778690 {"aliquot_tag": "ALQ_84bd66db", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.miRNA-Seq.S42_L008_R1.A C3N-00859 UCEC miRNA-Seq tissue_normal CPT0116040009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L008_R1_001.unaln.bam 186273281 BAM S42_L008_R1 submitted_unaligned CPTAC3 29760a76-064e-48c5-b03f-3373c76f314b fd1c1e08d1107083c458ff54ea656fac {"aliquot_tag": "ALQ_2c9a604e", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.miRNA-Seq.T.hg38 C3N-00859 UCEC miRNA-Seq tumor CPT0116010010 b3fa1c9c-2198-4cdd-a6e1-f8d92d7432ec_mirnaseq_gdc_realn.bam 225112197 BAM harmonized CPTAC3 bcbded0b-ca9c-4074-9c55-57c6173ea5e3 c8235ce2039a5a05bdebfaf9b4ce3ee2 {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.chimeric.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.chimeric.gdc_realn.bam 38175527 BAM chimeric harmonized CPTAC3 1496b73e-b49a-4e0b-b2f7-5d7c60c962d0 ae692f7323db7cc8477f5a89181d643b {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.RNA-Seq.chimeric.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.chimeric.gdc_realn.bam 32470428 BAM chimeric harmonized CPTAC3 84748585-a47c-4faf-ab9f-66e5ba0ca2bb 4aab9bae7183e771589121de5468a230 {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.chimeric.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.chimeric.gdc_realn.bam 257506137 BAM chimeric harmonized CPTAC3 2b834fa3-d0e0-4eb2-987a-6900e4dff374 0d177f8f0c021d174ee52f1b990e4434 {"aliquot_tag": "ALQ_3ec844f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.genomic.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.genomic.gdc_realn.bam 9171954274 BAM genomic harmonized CPTAC3 a6eb01e3-8183-46a3-be0f-ca47d8e9ee88 5b0dd00f4980d478338a9fb6d1c72256 {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.RNA-Seq.genomic.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.genomic.gdc_realn.bam 9563489939 BAM genomic harmonized CPTAC3 849d8f9f-894d-457e-81a0-882c9f77d9e0 c1af93428b25867f19010a97e5424e3a {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.genomic.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.genomic.gdc_realn.bam 12148877849 BAM genomic harmonized CPTAC3 96a63629-a52d-4e6d-bd54-17a148bdf35a e2983a77522cf90b8e888f47b686cdb3 {"aliquot_tag": "ALQ_3ec844f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.S19_L008_R1.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R1_001.fastq.gz 4222001969 FASTQ S19_L008_R1 submitted_unaligned CPTAC3 425c048c-b618-476a-aa1e-70ca92626d3a 6a354a88a87e1becae42aa8041c168be {"aliquot_tag": "ALQ_2c9a604e", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.RNA-Seq.S19_L008_R2.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R2_001.fastq.gz 4378688447 FASTQ S19_L008_R2 submitted_unaligned CPTAC3 ad36bd5f-4cee-4b18-8fe0-a6208f6bfe40 d7e7b2855e97ff7791e225d32519837b {"aliquot_tag": "ALQ_2c9a604e", "sample": "S19", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.RNA-Seq.S22_L008_R1.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R1_001.fastq.gz 4335261636 FASTQ S22_L008_R1 submitted_unaligned CPTAC3 8dd7f6fe-7301-4f05-9c51-09fa093615c6 403ddc0bedf9063ae2ed0e24cd9c2948 {"aliquot_tag": "ALQ_84bd66db", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.S22_L008_R2.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R2_001.fastq.gz 4343390030 FASTQ S22_L008_R2 submitted_unaligned CPTAC3 4bf41836-12db-4818-8d67-8993e64fba01 4dbe9cd5d3ae4bc171ab0c55b37b6a01 {"aliquot_tag": "ALQ_84bd66db", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.S27_R1.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R1_001.fastq.gz 7350883379 FASTQ S27_R1 submitted_unaligned CPTAC3 3d9db123-9d27-4026-a591-fae7284379e8 e26782f25762592e5df59adad4c4c7c6 {"aliquot_tag": "ALQ_3ec844f2", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.S27_R2.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R2_001.fastq.gz 7481981511 FASTQ S27_R2 submitted_unaligned CPTAC3 6ee0a228-39c7-453e-b81f-041e9bc3888d 530260af8473d8cd7c43057372e66bb4 {"aliquot_tag": "ALQ_3ec844f2", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.transcriptome.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.transcriptome.gdc_realn.bam 9754540480 BAM transcriptome harmonized CPTAC3 aba4cc76-7552-48e9-baf1-cb79bf4c2669 9ed2866ba72dd71e0dc6062dd6cff44e {"aliquot_tag": "ALQ_2c9a604e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.RNA-Seq.transcriptome.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.transcriptome.gdc_realn.bam 10950295193 BAM transcriptome harmonized CPTAC3 668fa6aa-9b48-47c1-8cdb-0c58708beaba 47148e2bacea255a33b7ad49b8757d8e {"aliquot_tag": "ALQ_84bd66db", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.RNA-Seq.transcriptome.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.transcriptome.gdc_realn.bam 5498285387 BAM transcriptome harmonized CPTAC3 79aa48c5-805d-4012-9fa7-784bfb8a058c 8f0caee9f100f1fc4122bf3239ecc025 {"aliquot_tag": "ALQ_3ec844f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.WGS.N C3N-00859 UCEC WGS blood_normal CPT0116130002 CPT0116130002.WholeGenome.RP-1303.bam 53147790036 BAM submitted_aligned CPTAC3 55b92604-1824-45e7-916a-33067953098d ede2b6321a8dd3fbbe5959207eeb3577 {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00859.WGS.N.hg38 C3N-00859 UCEC WGS blood_normal CPT0116130002 c6d7d55c-c04f-46b9-bc77-75ae1b1c2176_wgs_gdc_realn.bam 77971783546 BAM harmonized CPTAC3 3a08cf67-641a-4566-b6ee-b76de4b2b28c 92208f666147b24bf5370de19919a24f {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00859.WGS.T C3N-00859 UCEC WGS tumor CPT0116010007 CPT0116010007.WholeGenome.RP-1303.bam 58473534326 BAM submitted_aligned CPTAC3 14a601cb-538e-477b-8d5d-90b34e70a53d f5928ad04386dd3fa21ed4b00ca3325f {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.WGS.T.hg38 C3N-00859 UCEC WGS tumor CPT0116010007 b40a74bb-9918-4ade-a542-5b85fa8744c3_wgs_gdc_realn.bam 84285855604 BAM harmonized CPTAC3 6c552b08-bda0-4409-bf3b-5c82441db208 a6c3b6b3a9ca8b3bc3c10faf0c008d05 {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.WXS.A C3N-00859 UCEC WXS tissue_normal CPT0116040006 CPT0116040006.WholeExome.RP-1303.bam 25815960816 BAM submitted_aligned CPTAC3 39eddfd9-8dba-49d7-aa1d-b347842aefa9 0841c9beed116ad5dd485521116f9222 {"aliquot_tag": "ALQ_bc257ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.WXS.A.hg38 C3N-00859 UCEC WXS tissue_normal CPT0116040006 bf91ffec-4f43-4929-8d81-70010d2fbbc4_wxs_gdc_realn.bam 35288422952 BAM harmonized CPTAC3 9f76e921-d4c8-45d7-9665-d57156a20994 8ff7cf9503df75d4cc43a1d857ffe3e5 {"aliquot_tag": "ALQ_bc257ddf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00859.WXS.N C3N-00859 UCEC WXS blood_normal CPT0116130002 CPT0116130002.WholeExome.RP-1303.bam 31375531704 BAM submitted_aligned CPTAC3 18b8e01c-05a0-4068-a4b6-55c8a0a4c811 952617cb440eb225fab33c0649c9e98f {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00859.WXS.N.hg38 C3N-00859 UCEC WXS blood_normal CPT0116130002 c6d7d55c-c04f-46b9-bc77-75ae1b1c2176_wxs_gdc_realn.bam 43058589399 BAM harmonized CPTAC3 b360437c-f57e-48c0-8a1e-e2b76b7679ea bb6dd076357b3ab94b3a79036fafe877 {"aliquot_tag": "ALQ_c234b673", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00859.WXS.T C3N-00859 UCEC WXS tumor CPT0116010007 CPT0116010007.WholeExome.RP-1303.bam 21577093539 BAM submitted_aligned CPTAC3 158c416e-8b3b-4119-bf65-976d23d785fa 6c5c2da2aea073fc1026e391bd1a196b {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00859.WXS.T.hg38 C3N-00859 UCEC WXS tumor CPT0116010007 b40a74bb-9918-4ade-a542-5b85fa8744c3_wxs_gdc_realn.bam 30170092460 BAM harmonized CPTAC3 218e4969-24a1-4df5-8101-fdc92797c225 bae0cb0515b557a85be74ee82d0d883f {"aliquot_tag": "ALQ_3c2c239", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.MethArray.Green.T C3N-00860 UCEC Methylation_Array tumor CPT0116140007 203219650174_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a78e64fa-8792-429d-b06b-55e89d67861e 1941656bb3854c5df45162c89a63fe30 {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.MethArray.Red.T C3N-00860 UCEC Methylation_Array tumor CPT0116140007 203219650174_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 69cb4b8c-1aa4-4e4b-962e-99678215590f 4d6a6172eea50efce94486565f308c6f {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.miRNA-Seq.S43_L003_R1.T C3N-00860 UCEC miRNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0176_AHYGLVBBXX_TACAGC_S43_L003_R1_001.unaln.bam 196943373 BAM S43_L003_R1 submitted_unaligned CPTAC3 15e87dcd-158c-4323-885a-ba012c0566ba 1103670018eff28e0cba322d475ccd5a {"aliquot_tag": "ALQ_87013a0e", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.miRNA-Seq.T.hg38 C3N-00860 UCEC miRNA-Seq tumor CPT0116140010 e77c1d27-e43c-416f-a032-25c268f91b31_mirnaseq_gdc_realn.bam 222380510 BAM harmonized CPTAC3 d5b533a5-5dcd-4a6a-9451-c2d846a134be 8d4d47af0341da0be5df7a98a74a184d {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.chimeric.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.chimeric.gdc_realn.bam 30754581 BAM chimeric harmonized CPTAC3 28d2a951-00ea-4153-a2bb-89246b5cfb58 c30eb52c0e5d273cb2bb0ba93a6bc5c7 {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.chimeric.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.chimeric.gdc_realn.bam 116837974 BAM chimeric harmonized CPTAC3 83ea41ac-83fc-4215-bc5f-ffaf8a0853bb 1f8ff1eb60fcad5c868e4e2c4b477bf4 {"aliquot_tag": "ALQ_f628cb82", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.genomic.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.genomic.gdc_realn.bam 8107137531 BAM genomic harmonized CPTAC3 5021b258-3b49-4075-8feb-48f1b662a303 3eede0f07c730faa5686adda7aece2d6 {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.genomic.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.genomic.gdc_realn.bam 7239920172 BAM genomic harmonized CPTAC3 ebaa4998-fe87-4c67-97eb-fe14c00d6391 764b813bfaf8115444346cedd6a46208 {"aliquot_tag": "ALQ_f628cb82", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.S21_L008_R1.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R1_001.fastq.gz 3852657370 FASTQ S21_L008_R1 submitted_unaligned CPTAC3 936067aa-6f2a-4779-af40-62508e7c1313 6a70d96fd66cfbd78aafc39a3ef165e3 {"aliquot_tag": "ALQ_87013a0e", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.S21_L008_R2.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R2_001.fastq.gz 3959297329 FASTQ S21_L008_R2 submitted_unaligned CPTAC3 2c131676-90dd-41f3-b774-4b3e746150cc e3775bd1e60f892b64a4450b93c38e29 {"aliquot_tag": "ALQ_87013a0e", "sample": "S21", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.S82_R1.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R1_001.fastq.gz 6093621596 FASTQ S82_R1 submitted_unaligned CPTAC3 e422f397-cd60-4c4f-91c2-f0265b575ac3 3abb5c757bdb986ae3565b7a38f1607c {"aliquot_tag": "ALQ_f628cb82", "sample": "S82", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.S82_R2.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R2_001.fastq.gz 6281335918 FASTQ S82_R2 submitted_unaligned CPTAC3 72732b42-e9fe-454b-a48d-2032641d749f 02d7acf531ae7271156e60e0878141e8 {"aliquot_tag": "ALQ_f628cb82", "sample": "S82", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.transcriptome.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.transcriptome.gdc_realn.bam 9030897892 BAM transcriptome harmonized CPTAC3 16f3bb21-286a-4b35-8c17-17e54ddf6b8a b5119748127650fb2a8f9d1e5fe7ba62 {"aliquot_tag": "ALQ_87013a0e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.RNA-Seq.transcriptome.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.transcriptome.gdc_realn.bam 4278049900 BAM transcriptome harmonized CPTAC3 3737640e-70ae-4cd3-983f-6f166ec9af64 2de78eb890a961766253a5349b4b54fd {"aliquot_tag": "ALQ_f628cb82", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.WGS.N C3N-00860 UCEC WGS blood_normal CPT0116240002 CPT0116240002.WholeGenome.RP-1303.bam 64399380983 BAM submitted_aligned CPTAC3 145ef959-94ac-49dc-a095-dd17e6bbf65c 232192559883e7c45d11234a46d28c97 {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00860.WGS.N.hg38 C3N-00860 UCEC WGS blood_normal CPT0116240002 7c58c0de-13cd-4da1-8905-59313817c99c_wgs_gdc_realn.bam 94227137464 BAM harmonized CPTAC3 11ccbcdc-bf45-4679-97ee-0132bb718f11 cfc142287b9ec14e6036ce30d62f7181 {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00860.WGS.T C3N-00860 UCEC WGS tumor CPT0116140007 CPT0116140007.WholeGenome.RP-1303.bam 54046227118 BAM submitted_aligned CPTAC3 7d060781-b1e4-4a50-a5d5-26fbfc357e8b 10f8bf4589da002f7a82cca956547dab {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.WGS.T.hg38 C3N-00860 UCEC WGS tumor CPT0116140007 f992f542-003e-4700-ac85-37a8ca418a48_wgs_gdc_realn.bam 78953032782 BAM harmonized CPTAC3 862f4c81-5d9e-433f-8529-cb4369f09782 75e0cc1bb6a707f3487d9f38b392a435 {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.WXS.N C3N-00860 UCEC WXS blood_normal CPT0116240002 CPT0116240002.WholeExome.RP-1303.bam 19355004092 BAM submitted_aligned CPTAC3 07e9d994-b649-4872-922f-badffdf0d69b 2230a669049f0835da9ffb0c7213d424 {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00860.WXS.N.hg38 C3N-00860 UCEC WXS blood_normal CPT0116240002 7c58c0de-13cd-4da1-8905-59313817c99c_wxs_gdc_realn.bam 26445024448 BAM harmonized CPTAC3 790a38d1-727b-4f18-9a65-986a4c6b543a 4512c5bb16d2bb2e11882ab02332a3cb {"aliquot_tag": "ALQ_f68018cd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00860.WXS.T C3N-00860 UCEC WXS tumor CPT0116140007 CPT0116140007.WholeExome.RP-1303.bam 35988578561 BAM submitted_aligned CPTAC3 5860a15f-4c71-4be7-b907-b02bbe9e740c b1618408207e743d83360f19215501d3 {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00860.WXS.T.hg38 C3N-00860 UCEC WXS tumor CPT0116140007 f992f542-003e-4700-ac85-37a8ca418a48_wxs_gdc_realn.bam 50345512612 BAM harmonized CPTAC3 c9d9fb40-aadd-447a-ad18-8cd6c3440e08 8ad2855840ae339d02220ab59c86261a {"aliquot_tag": "ALQ_7e9eec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00866.MethArray.Green.T C3N-00866 UCEC Methylation_Array tumor CPT0063090009 202178770100_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 869fece6-88d8-4f53-9129-5485d470e62f 9cf150c6aa8999d8b700fe241d50e0a3 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.MethArray.Red.T C3N-00866 UCEC Methylation_Array tumor CPT0063090009 202178770100_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 3a00c09a-de7b-48b3-8ee0-3f4dc55702ee 408d466c3a10049c48fa65dd5e6da73a {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.miRNA-Seq.A.hg38 C3N-00866 UCEC miRNA-Seq tissue_normal CPT0063110004 f537006e-72e3-4379-9a0e-602f64b86278_mirnaseq_gdc_realn.bam 232173813 BAM harmonized CPTAC3 7e665751-419e-4b8f-af6f-51e06b706e80 61ce2afdd67abd1107be6366d96110ac {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00866.miRNA-Seq.S17_L003_R1.T C3N-00866 UCEC miRNA-Seq tumor CPT0063090006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTTCC_S17_L003_R1_001.unaln.bam 172906655 BAM S17_L003_R1 submitted_unaligned CPTAC3 bccfbfb0-0353-4856-9fde-87b79d4aa45b be05994135334a5ae8130c2ee0e9a882 {"aliquot_tag": "ALQ_b338b93", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.miRNA-Seq.S1_L005_R1.A C3N-00866 UCEC miRNA-Seq tissue_normal CPT0063110004 181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L005_R1_001.unaln.bam 197479292 BAM S1_L005_R1 submitted_unaligned CPTAC3 ce4a48ac-acc6-4e19-99ca-f854bf1c1d5b b624414aefd9789c97492a4d38fb2414 {"aliquot_tag": "ALQ_1e1172db", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00866.miRNA-Seq.T.hg38 C3N-00866 UCEC miRNA-Seq tumor CPT0063090006 7c672613-2a8a-4cbf-9184-27334b900310_mirnaseq_gdc_realn.bam 184125657 BAM harmonized CPTAC3 1c759d84-2410-428b-b39d-65d0e9bd2d14 e4de14e205e1ef03dd54e515ec005655 {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.chimeric.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.chimeric.gdc_realn.bam 72093749 BAM chimeric harmonized CPTAC3 fc4a9d26-2e95-450a-ae2a-4cc0659ae552 f7a4b204538b4eb23a8924d8a4882ec0 {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00866.RNA-Seq.chimeric.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.chimeric.gdc_realn.bam 31001823 BAM chimeric harmonized CPTAC3 5d553392-bb38-4b57-9a3f-980d5aaf40ea dfc8380cd1a9a5cad0b6cddc52ed81f6 {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.chimeric.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.chimeric.gdc_realn.bam 378253089 BAM chimeric harmonized CPTAC3 9d902945-8e22-4e20-a39e-5caa6c2ab445 e695efe08068fcfa208211fa9a4c01d1 {"aliquot_tag": "ALQ_14bbd534", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.genomic.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.genomic.gdc_realn.bam 8227016829 BAM genomic harmonized CPTAC3 390664b5-b265-4638-9ff4-620ef4f858c8 0651bed40623b1b94e28d6d7bf09c1a4 {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00866.RNA-Seq.genomic.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.genomic.gdc_realn.bam 8651837509 BAM genomic harmonized CPTAC3 2b87693e-4bec-42b3-b03f-581746e6294b 7663194d003cfa51fd3ed4fc9539f56e {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.genomic.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.genomic.gdc_realn.bam 18852988763 BAM genomic harmonized CPTAC3 72845ff6-2c43-442b-9732-e605d0374575 4774d938c094cb42000929c0eaa92fd1 {"aliquot_tag": "ALQ_14bbd534", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.S17_L005_R1.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R1_001.fastq.gz 4083147786 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 af76a34d-cc47-4d15-a276-60e3923b3975 89ef8abbbda4b42701275353d5e5d9df {"aliquot_tag": "ALQ_1e1172db", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00866.RNA-Seq.S17_L005_R2.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R2_001.fastq.gz 3908032870 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 335d84c6-609f-4669-ae8c-2242a24a4fa8 0a9443bc770bd40275305da08c923fdc {"aliquot_tag": "ALQ_1e1172db", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00866.RNA-Seq.S51_R1.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R1_001.fastq.gz 12607998362 FASTQ S51_R1 submitted_unaligned CPTAC3 5a754c59-3b24-4bf0-a3a8-a4a780c68791 b0cdd6c71ad91b2ed84f97257b18db58 {"aliquot_tag": "ALQ_14bbd534", "sample": "S51", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.S51_R2.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R2_001.fastq.gz 13227275490 FASTQ S51_R2 submitted_unaligned CPTAC3 234830ec-bd6e-46ec-90ea-ada6c267176e 722d2e59df197d13904761a611af8a35 {"aliquot_tag": "ALQ_14bbd534", "sample": "S51", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.S8_L002_R1.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3972395204 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 99455b1b-f110-46ef-a03e-be651c28a0bd 104cdf258fb2a43943130acdaad08c21 {"aliquot_tag": "ALQ_b338b93", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.S8_L002_R2.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4257107133 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 8323759d-cdc4-481c-8518-f170b5a87082 2e6fc941e03a5728d9828a4b6a14b49e {"aliquot_tag": "ALQ_b338b93", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.transcriptome.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.transcriptome.gdc_realn.bam 9849650483 BAM transcriptome harmonized CPTAC3 117329ea-c7ba-447a-acb6-2b0a5b45bf1c e44e221bc0b79fb164dcfcbd125c1095 {"aliquot_tag": "ALQ_1e1172db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00866.RNA-Seq.transcriptome.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.transcriptome.gdc_realn.bam 7779974912 BAM transcriptome harmonized CPTAC3 9db68238-f0c7-4e31-9c87-3989a634269d 609affeb981ee3d6edfa0afe91439b3f {"aliquot_tag": "ALQ_b338b93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.RNA-Seq.transcriptome.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.transcriptome.gdc_realn.bam 11025174347 BAM transcriptome harmonized CPTAC3 a4d0c34a-ec52-41a1-9c09-b5daa226c83f 186d79e1e0c9575e2ef8c2116183b346 {"aliquot_tag": "ALQ_14bbd534", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.WGS.N C3N-00866 UCEC WGS blood_normal CPT0063210002 CPT0063210002.WholeGenome.RP-1303.bam 71157671685 BAM submitted_aligned CPTAC3 d3c0841e-9602-4cb2-9d28-7ce2c79e8e61 f022065290148a17565df4af2c9ae46a {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00866.WGS.N.hg38 C3N-00866 UCEC WGS blood_normal CPT0063210002 5a955d91-4992-4986-a78b-a2f80f455ea1_gdc_realn.bam 113783908681 BAM harmonized CPTAC3 3cc9b549-bbac-48cc-8a82-5486203bf83d 263d7920ae3725bbe50bf39a59a2ff89 {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00866.WGS.T C3N-00866 UCEC WGS tumor CPT0063090009 CPT0063090009.WholeGenome.RP-1303.bam 68887603626 BAM submitted_aligned CPTAC3 c344cec3-e9ee-43f1-823c-e1993b4ae46d 23d6091d6eae44d6356b277fd9a1b1a2 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.WGS.T.hg38 C3N-00866 UCEC WGS tumor CPT0063090009 6c9f01df-2bc2-405e-b94c-a673cde4f948_gdc_realn.bam 103052108860 BAM harmonized CPTAC3 c825581d-0f15-4602-9895-fc171e032585 1ce83a3ec6ca94e45bd571c858f1befb {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.WXS.N C3N-00866 UCEC WXS blood_normal CPT0063210002 CPT0063210002.WholeExome.RP-1303.bam 24115087578 BAM submitted_aligned CPTAC3 5e2f889e-d261-442f-83bb-63f151bef53e 141fd024bbbb3d31b4b57466c936f097 {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00866.WXS.N.hg38 C3N-00866 UCEC WXS blood_normal CPT0063210002 5a955d91-4992-4986-a78b-a2f80f455ea1_gdc_realn.bam 32612227007 BAM harmonized CPTAC3 ee7f6e8b-6389-4391-9e6a-5cdc220bc39b 393c6719fe946bc2c26a8c5ede8f4343 {"aliquot_tag": "ALQ_71e6a540", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00866.WXS.T C3N-00866 UCEC WXS tumor CPT0063090009 CPT0063090009.WholeExome.RP-1303.bam 29131897228 BAM submitted_aligned CPTAC3 1b01d1ea-eed0-4d42-903b-f811ba2ec579 e04effbf9e66a8b583ce7330741c02b7 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00866.WXS.T.hg38 C3N-00866 UCEC WXS tumor CPT0063090009 6c9f01df-2bc2-405e-b94c-a673cde4f948_gdc_realn.bam 39888639438 BAM harmonized CPTAC3 ad5ee7c0-c8bd-4cab-b438-7af8fa0c9946 c816dc19fe3e9ec647b13fe742a86040 {"aliquot_tag": "ALQ_9b8c9602", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.MethArray.Green.T C3N-00871 HNSCC Methylation_Array tumor CPT0094420010 202234360029_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 704f0f19-3d38-4e47-983f-8c0e3bd0b66c b108932218a02d2ea25a0c76f4c0323f {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.MethArray.Red.T C3N-00871 HNSCC Methylation_Array tumor CPT0094420010 202234360029_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 48411d64-8284-44a7-ac85-578b3b185d9a 55c9eadc732c2f567be1b3bb7c48f376 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.miRNA-Seq.S37_L007_R1.T C3N-00871 HNSCC miRNA-Seq tumor CPT0094420007 180828_UNC32-K00270_0112_AHWTLNBBXX_CACGAT_S37_L007_R1_001.unaln.bam 199443131 BAM S37_L007_R1 submitted_unaligned CPTAC3 3ffd7835-31e2-4858-b845-1b0ee7602710 a304a69bbe4a9507db1de124243aeb9e {"aliquot_tag": "ALQ_8cf2e420", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.miRNA-Seq.T.hg38 C3N-00871 HNSCC miRNA-Seq tumor CPT0094420007 d41f2be7-f487-4026-ac54-b20e99d4d795_mirnaseq_gdc_realn.bam 219705116 BAM harmonized CPTAC3 ad0f53a9-caa0-430f-a577-91244afe7eab 9008670a492f725285885387a8ed35f8 {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.chimeric.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.chimeric.gdc_realn.bam 33264680 BAM chimeric harmonized CPTAC3 bf5ac8c2-fcff-4d55-9b08-b4b7a951af81 cadd0c0e2969dca6158679004df75f1e {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.chimeric.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.chimeric.gdc_realn.bam 268189092 BAM chimeric harmonized CPTAC3 e6f039a9-6da7-488b-8280-a02473dc2ec6 36d9397cc818fdb0844aa9f1b258a448 {"aliquot_tag": "ALQ_dc524f85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.genomic.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.genomic.gdc_realn.bam 8764417737 BAM genomic harmonized CPTAC3 5c385d3b-df34-495c-87d3-2bdb083140d0 dbdac3f4997713a3ef7bc9aa09d2e232 {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.genomic.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.genomic.gdc_realn.bam 14158024006 BAM genomic harmonized CPTAC3 8eb97547-9bb6-40e4-97f5-288bc73a0e53 1a7176a2b27f5cb9dae610daa46a0eae {"aliquot_tag": "ALQ_dc524f85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.S54_R1.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R1_001.fastq.gz 8918622985 FASTQ S54_R1 submitted_unaligned CPTAC3 bcb11898-0cfd-414a-b606-28e376bd2632 469c641be16ddad4724f63be92a87bb1 {"aliquot_tag": "ALQ_dc524f85", "sample": "S54", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.S54_R2.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R2_001.fastq.gz 9218630952 FASTQ S54_R2 submitted_unaligned CPTAC3 4576db9e-8de9-4f5c-b980-4a11287f6dfc 5c6cb107b7954a11051ff4d63631453a {"aliquot_tag": "ALQ_dc524f85", "sample": "S54", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.S9_L003_R1.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R1_001.fastq.gz 4135810698 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 a73fcaff-9a1e-4c69-8cb5-e86675a2b9e5 4ef2eca695ab13b78f8bef010486cd7b {"aliquot_tag": "ALQ_8cf2e420", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.S9_L003_R2.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R2_001.fastq.gz 4525311768 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 e1a47c74-afd0-4f7f-b392-54a4b6b2ea41 0f41aba291cd9a7d8216be19c0a35092 {"aliquot_tag": "ALQ_8cf2e420", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.transcriptome.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.transcriptome.gdc_realn.bam 11572685723 BAM transcriptome harmonized CPTAC3 d192c8e5-0638-41d8-8622-86d1208343d2 bfe50b4e1464901a56e57b275f313aa6 {"aliquot_tag": "ALQ_8cf2e420", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.RNA-Seq.transcriptome.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.transcriptome.gdc_realn.bam 10501590845 BAM transcriptome harmonized CPTAC3 d1d8ed81-667a-4229-9041-2000a65f93a9 f06c174536e513c8543e38133491f2d5 {"aliquot_tag": "ALQ_dc524f85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.WGS.N C3N-00871 HNSCC WGS blood_normal CPT0094480008 CPT0094480008.WholeGenome.RP-1303.bam 72393575679 BAM submitted_aligned CPTAC3 5d65c146-0618-469e-9ce1-1be4bc2effe3 ba6c150f8f885013943acc629b337b8e {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00871.WGS.N.hg38 C3N-00871 HNSCC WGS blood_normal CPT0094480008 977a93e6-4351-45fa-96de-8cc607966272_wgs_gdc_realn.bam 107188077288 BAM harmonized CPTAC3 797ef08b-2a03-4445-8cf9-56d515b2d92a 95067fff09c612ebb4ab8fbed38930fd {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00871.WGS.T C3N-00871 HNSCC WGS tumor CPT0094420010 CPT0094420010.WholeGenome.RP-1303.bam 61468563846 BAM submitted_aligned CPTAC3 b3d6c036-cbcc-49e5-b02c-2a4ac5321d25 34f7665600b1af004ee078428bfbfac9 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.WGS.T.hg38 C3N-00871 HNSCC WGS tumor CPT0094420010 01090fc3-17f9-467a-bee3-662bb4e57820_wgs_gdc_realn.bam 91648338629 BAM harmonized CPTAC3 cf8d4394-5a7d-4ecf-90cc-dc622db5f4ed 09f07cce102322044fafbde098af6d23 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.WXS.N C3N-00871 HNSCC WXS blood_normal CPT0094480008 CPT0094480008.WholeExome.RP-1303.bam 31373370968 BAM submitted_aligned CPTAC3 b43376d7-5e80-4305-94e2-0e7cd5d6a6cf a6c176ae356fb2cea634b49fabfa1b43 {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00871.WXS.N.hg38 C3N-00871 HNSCC WXS blood_normal CPT0094480008 977a93e6-4351-45fa-96de-8cc607966272_wxs_gdc_realn.bam 43245945096 BAM harmonized CPTAC3 403783f2-6e97-43cc-b20c-e30d167fa7bd 2f90346dfb9b212ec588409c2f594b2d {"aliquot_tag": "ALQ_56fde110", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00871.WXS.T C3N-00871 HNSCC WXS tumor CPT0094420010 CPT0094420010.WholeExome.RP-1303.bam 27420854420 BAM submitted_aligned CPTAC3 6df13bac-b2ec-431e-a82f-43490ae586b3 5d68e1b65b51164ccbdd200fafc758cd {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00871.WXS.T.hg38 C3N-00871 HNSCC WXS tumor CPT0094420010 01090fc3-17f9-467a-bee3-662bb4e57820_wxs_gdc_realn.bam 38604538248 BAM harmonized CPTAC3 77b7d587-befe-4458-9e9c-7e329af1fbdb 6862d436795d821e2b93c475f24da2d9 {"aliquot_tag": "ALQ_b8d40c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00872.MethArray.Green.T C3N-00872 UCEC Methylation_Array tumor CPT0116250007 203219650157_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8d783fe3-f5cd-4a2b-a253-bd0e87b6f2ad 6cfa3be2fa59d2b5e5ad6c0b589bbd4a {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.MethArray.Red.T C3N-00872 UCEC Methylation_Array tumor CPT0116250007 203219650157_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 a73a0461-425f-48b0-9bb0-a973ca89bfc7 170e9acc302190d4b22bee58d39404a2 {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.miRNA-Seq.A.hg38 C3N-00872 UCEC miRNA-Seq tissue_normal CPT0116280009 a4a08f34-5c15-42ea-ac72-7eec5fbc1fc3_mirnaseq_gdc_realn.bam 287787191 BAM harmonized CPTAC3 ed4ed58d-6da8-4bfe-9ea6-6c04669445e5 c40137aa9600cbe63d39b38f6af9869f {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.miRNA-Seq.S43_L003_R1.A C3N-00872 UCEC miRNA-Seq tissue_normal CPT0116280009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L003_R1_001.unaln.bam 250645735 BAM S43_L003_R1 submitted_unaligned CPTAC3 04cdca1f-c4b8-429b-a8a8-19c4843acfe5 1cf921650a6b67969796dfd0311f5031 {"aliquot_tag": "ALQ_a4a22c44", "sample": "S43", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.miRNA-Seq.S44_L003_R1.T C3N-00872 UCEC miRNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0176_AHYGLVBBXX_TATAAT_S44_L003_R1_001.unaln.bam 244173309 BAM S44_L003_R1 submitted_unaligned CPTAC3 253cbe12-4c14-41d3-b323-1219ec2748cd 184f42116516c75ab72ee7a08b229c1a {"aliquot_tag": "ALQ_3cf56110", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.miRNA-Seq.T.hg38 C3N-00872 UCEC miRNA-Seq tumor CPT0116250010 972e0acc-1bea-46d7-a506-87b186e36cdc_mirnaseq_gdc_realn.bam 265907333 BAM harmonized CPTAC3 c285e884-eba4-45c9-8bcb-66defd98bedf 008de24727adc0528423e6b8a02e1458 {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.chimeric.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.chimeric.gdc_realn.bam 48792243 BAM chimeric harmonized CPTAC3 72160f21-623f-4daa-95dd-86a2170fc451 d6e0ffd1cdce071dd6e56e512c87854d {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.RNA-Seq.chimeric.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.chimeric.gdc_realn.bam 29220840 BAM chimeric harmonized CPTAC3 d1786076-4514-451f-9670-e0d12a0a17a2 9be77e8fa01dbfe3bfa3a906e58e0485 {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.chimeric.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.chimeric.gdc_realn.bam 196913389 BAM chimeric harmonized CPTAC3 d1e7cefe-5dbd-41f9-ac03-18b576008ce7 22387d7d4ba83d7333469234413ab742 {"aliquot_tag": "ALQ_33d82683", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.genomic.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.genomic.gdc_realn.bam 10027076893 BAM genomic harmonized CPTAC3 d94b58e7-30c6-443b-9ac3-328192c06fa0 e8ca4753197954b9fe386f2173f0ec80 {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.RNA-Seq.genomic.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.genomic.gdc_realn.bam 7873876795 BAM genomic harmonized CPTAC3 10ca5a27-027b-438a-a5f6-60b4c059f6c7 ffe5764ef37f45060e517c38b6b79abc {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.genomic.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.genomic.gdc_realn.bam 11047598524 BAM genomic harmonized CPTAC3 e416f5a0-1ad6-434f-9322-b85badf05592 0a59ff72b47b500313ae9b09a0452596 {"aliquot_tag": "ALQ_33d82683", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.S24_L008_R1.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R1_001.fastq.gz 3696897511 FASTQ S24_L008_R1 submitted_unaligned CPTAC3 cabfd70f-26b9-44d8-ad68-1542477ab7c9 9d6ec0094f2edcdcdc457ae3d245af9b {"aliquot_tag": "ALQ_3cf56110", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.S24_L008_R2.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R2_001.fastq.gz 3873724480 FASTQ S24_L008_R2 submitted_unaligned CPTAC3 99b4e1f1-34d9-4b69-bb5e-5b3ffc0fcee0 e48e636651674f04f44b9bfda3fd03bf {"aliquot_tag": "ALQ_3cf56110", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.S33_R1.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R1_001.fastq.gz 6988351710 FASTQ S33_R1 submitted_unaligned CPTAC3 1629fad9-4878-4c77-8899-a2d7420986f3 75ab052e521d51a5072fb9ed9bcb9b34 {"aliquot_tag": "ALQ_33d82683", "sample": "S33", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.S33_R2.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R2_001.fastq.gz 7285825912 FASTQ S33_R2 submitted_unaligned CPTAC3 d3609305-26e7-42f5-b92a-43ccea1d7b12 b60ee59e0e3f38892438b87378ebf86b {"aliquot_tag": "ALQ_33d82683", "sample": "S33", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.S5_L002_R1.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R1_001.fastq.gz 4281378466 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 bb274bbe-0077-4577-aa4b-89656d4a19de d263d59d51b0737146defb3c727689f5 {"aliquot_tag": "ALQ_a4a22c44", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.RNA-Seq.S5_L002_R2.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R2_001.fastq.gz 4719270240 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 110a4c7e-71f1-4d8d-9092-e5424030f813 3268655cb200095538ca5916384fd198 {"aliquot_tag": "ALQ_a4a22c44", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.RNA-Seq.transcriptome.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.transcriptome.gdc_realn.bam 11336448211 BAM transcriptome harmonized CPTAC3 9faa9151-a6cf-423b-80e9-8f0fca7f9300 09fefcd89787ffeef8389ec4de467d58 {"aliquot_tag": "ALQ_a4a22c44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.RNA-Seq.transcriptome.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.transcriptome.gdc_realn.bam 10180645064 BAM transcriptome harmonized CPTAC3 93f0c8b0-9d42-4ab9-8438-22561f299106 1c499663e382f1908c799ee052ce34d9 {"aliquot_tag": "ALQ_3cf56110", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.RNA-Seq.transcriptome.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.transcriptome.gdc_realn.bam 5137278610 BAM transcriptome harmonized CPTAC3 b263b6f9-07da-4d13-bd80-335101059198 4978cb7d4b79622387deb1ef7bcdb3a8 {"aliquot_tag": "ALQ_33d82683", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.WGS.N C3N-00872 UCEC WGS blood_normal CPT0116330002 CPT0116330002.WholeGenome.RP-1303.bam 62384565348 BAM submitted_aligned CPTAC3 9db3be3b-8c75-466c-ab60-500840d012f6 54203145bb670d345c351add36400ab1 {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00872.WGS.N.hg38 C3N-00872 UCEC WGS blood_normal CPT0116330002 84ad92c7-50c4-478c-aee1-95dba53bbb7b_wgs_gdc_realn.bam 91136245838 BAM harmonized CPTAC3 1e62f45a-68a2-4194-b96f-9b5cd1851102 28d50179151da2108a80ac3b7d8d57b7 {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00872.WGS.T C3N-00872 UCEC WGS tumor CPT0116250007 CPT0116250007.WholeGenome.RP-1303.bam 56286050876 BAM submitted_aligned CPTAC3 7ed27d67-c059-4f23-9c98-c9a23e61303b b9f7e39e2c6b21e1812013db26a7c65a {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.WGS.T.hg38 C3N-00872 UCEC WGS tumor CPT0116250007 4cf0ae05-6027-4992-9751-92b2ea4c2198_wgs_gdc_realn.bam 82011672894 BAM harmonized CPTAC3 20c5f33e-4e87-4b3e-a8db-babc8895b7dd 672187f032fcba9e9aa49ce696071982 {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.WXS.A C3N-00872 UCEC WXS tissue_normal CPT0116280006 CPT0116280006.WholeExome.RP-1303.bam 19926454590 BAM submitted_aligned CPTAC3 7aade6fa-58ed-414b-89c6-bad9dbb9690d 47d258999317ed21e8117b6a0e70507d {"aliquot_tag": "ALQ_341d31d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.WXS.A.hg38 C3N-00872 UCEC WXS tissue_normal CPT0116280006 a08ea010-9f49-4280-98d1-c6bdfd39f559_wxs_gdc_realn.bam 27582182344 BAM harmonized CPTAC3 00eb5c33-98b2-4b40-9d9b-93172cff5246 f868f417eda3ad8045a302d0e91c02be {"aliquot_tag": "ALQ_341d31d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00872.WXS.N C3N-00872 UCEC WXS blood_normal CPT0116330002 CPT0116330002.WholeExome.RP-1303.bam 22984979212 BAM submitted_aligned CPTAC3 053b2240-f5d3-4bac-8ffc-329c4edebf26 6b569923a06dc5612dae67e4c8729c81 {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00872.WXS.N.hg38 C3N-00872 UCEC WXS blood_normal CPT0116330002 84ad92c7-50c4-478c-aee1-95dba53bbb7b_wxs_gdc_realn.bam 31310256445 BAM harmonized CPTAC3 97c312d8-e191-4abf-85f3-3515e2f3d949 b0d3808019cec471187ee34d3c70d0cd {"aliquot_tag": "ALQ_8ffc1778", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00872.WXS.T C3N-00872 UCEC WXS tumor CPT0116250007 CPT0116250007.WholeExome.RP-1303.bam 27689097271 BAM submitted_aligned CPTAC3 65b17f18-8bdc-4637-b17e-fc52583cd524 41e0c802066f5b856c31783af1480406 {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00872.WXS.T.hg38 C3N-00872 UCEC WXS tumor CPT0116250007 4cf0ae05-6027-4992-9751-92b2ea4c2198_wxs_gdc_realn.bam 37925158138 BAM harmonized CPTAC3 f43b8473-811f-4751-9802-aae7c76c4c5e 95d7b9d908c86e837d4db2b41bbd769d {"aliquot_tag": "ALQ_bb8ac5f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00880.MethArray.Green.T C3N-00880 UCEC Methylation_Array tumor CPT0078710010 202184990057_R03C01_Grn.idat 13676218 IDAT Green NA CPTAC3 8a3baf71-0dc0-4571-b1bf-4d59fd1b0bf0 496e49c4a6226dfc655a0f231a86f4a9 {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.MethArray.Red.T C3N-00880 UCEC Methylation_Array tumor CPT0078710010 202184990057_R03C01_Red.idat 13676218 IDAT Red NA CPTAC3 dc069b2e-28f5-49ed-8f4f-734eccd99557 48e188651d2d20fb76800d820489681b {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.miRNA-Seq.S19_L005_R1.T C3N-00880 UCEC miRNA-Seq tumor CPT0078710007 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L005_R1_001.unaln.bam 212662511 BAM S19_L005_R1 submitted_unaligned CPTAC3 61ae2220-a020-42b2-a8c0-570310627257 b5166ba2f5336590f3fcc45ab4fea10e {"aliquot_tag": "ALQ_9fec9418", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.miRNA-Seq.T.hg38 C3N-00880 UCEC miRNA-Seq tumor CPT0078710007 c6f87cd6-014d-4b5d-bd43-c6560a2000a3_mirnaseq_gdc_realn.bam 236219763 BAM harmonized CPTAC3 349237b9-0a64-491c-b1d1-731a4cd22303 b2d7a90c611e28638235253f06178d89 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.RNA-Seq.chimeric.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.chimeric.gdc_realn.bam 220296908 BAM chimeric harmonized CPTAC3 998f2450-f7f6-419c-ae89-b1174bb8c6cd d9ca66411b2a52b1cc22563f5d268021 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.RNA-Seq.genomic.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.genomic.gdc_realn.bam 8552625394 BAM genomic harmonized CPTAC3 2ea9c9e8-c345-44fe-be3f-7c32f36e4e7e cf6d2a7ac89eef79d0f584e07a567d99 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.RNA-Seq.S5_L002_R1.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R1_001.fastq.gz 4058753257 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 f0952653-8c23-4781-a477-c2ce76f9d1b6 34570876e7d63e1d08b81e0e597a9245 {"aliquot_tag": "ALQ_9fec9418", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.RNA-Seq.S5_L002_R2.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R2_001.fastq.gz 4421738132 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 6a2bd4f3-68fc-48f2-a604-db2c5a7b665b 9c1ccdbe48d30004544f40124a821569 {"aliquot_tag": "ALQ_9fec9418", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.RNA-Seq.transcriptome.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.transcriptome.gdc_realn.bam 11295373053 BAM transcriptome harmonized CPTAC3 9ba9d8b5-4cd9-461f-ba44-fece814b3f77 353bfafff85e9640d2b0c2484dc6c3a8 {"aliquot_tag": "ALQ_9fec9418", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.WGS.N C3N-00880 UCEC WGS blood_normal CPT0078790002 CPT0078790002.WholeGenome.RP-1303.bam 74618018102 BAM submitted_aligned CPTAC3 d54c5886-845a-4344-ad59-640aac4aa84d 4d2ffff54f31cde9466f842945e587d2 {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00880.WGS.N.hg38 C3N-00880 UCEC WGS blood_normal CPT0078790002 d564a1a0-e99a-4998-8fa1-df8128379f65_gdc_realn.bam 109558122973 BAM harmonized CPTAC3 a3cc4371-a3ba-4bf9-83a8-944c42d63a5d 39102ab7d438c8155a5f6ac196ef66bd {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00880.WGS.T C3N-00880 UCEC WGS tumor CPT0078710010 CPT0078710010.WholeGenome.RP-1303.bam 64996766133 BAM submitted_aligned CPTAC3 7629b872-4672-47db-876a-715b681f6b78 9655038b8121bddce75b1c44e1dad1bf {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.WGS.T.hg38 C3N-00880 UCEC WGS tumor CPT0078710010 90388559-98b6-4014-b201-f64e4965649b_gdc_realn.bam 95731746049 BAM harmonized CPTAC3 46d5c8ad-33ef-4601-afbd-9b24761939c4 6f695a21d10fdf65a167387a993f911e {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.WXS.N C3N-00880 UCEC WXS blood_normal CPT0078790002 CPT0078790002.WholeExome.RP-1303.bam 39329772036 BAM submitted_aligned CPTAC3 cd642219-843d-4989-94ed-ce830d8f76e7 5551857732a499a81d158df339ea1dd5 {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00880.WXS.N.hg38 C3N-00880 UCEC WXS blood_normal CPT0078790002 d564a1a0-e99a-4998-8fa1-df8128379f65_gdc_realn.bam 53095766760 BAM harmonized CPTAC3 1a8134da-8b3b-4ef2-bef6-a09a7bba5847 04883134f4389db1ea43d2f647dc3235 {"aliquot_tag": "ALQ_dff62b56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00880.WXS.T C3N-00880 UCEC WXS tumor CPT0078710010 CPT0078710010.WholeExome.RP-1303.bam 27578544024 BAM submitted_aligned CPTAC3 104a6440-a2e3-4e92-b0af-ca129f694835 ba748e4de18dce67cd1a8d4e6f90e60e {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00880.WXS.T.hg38 C3N-00880 UCEC WXS tumor CPT0078710010 90388559-98b6-4014-b201-f64e4965649b_gdc_realn.bam 38211643538 BAM harmonized CPTAC3 dbc9b510-b274-4590-b23a-606d5ae71d48 777d68208ed2809c6d419ddaec5b63b6 {"aliquot_tag": "ALQ_189330fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_52fb2eb3.miRNA-Seq.S10_L006_R1.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065220006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGGCG_S10_L006_R1_001.unaln.bam 244489118 BAM S10_L006_R1 submitted_unaligned CPTAC3 fba111ef-263b-47c5-8eea-c8226ea0b5fb 8a7dac69fa03243fc1731b89d7d6e944 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_52fb2eb3.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065220006 19ced899-9a31-465a-b7b9-41df57ad7762_mirnaseq_gdc_realn.bam 265894349 BAM harmonized CPTAC3 81f5b6e3-0ef4-4c56-8860-23f92f1d26c2 af4b517bddc58bd4ec5a3f6ead391650 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_52fb2eb3.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.chimeric.gdc_realn.bam 327915679 BAM chimeric harmonized CPTAC3 0ba24d45-9a91-443c-857c-3cf44b69ea84 dbd757ebf8151fba11b2f93bcbe278e8 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_52fb2eb3.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.genomic.gdc_realn.bam 8157076537 BAM genomic harmonized CPTAC3 2329d250-f867-4bbe-8f7f-e25c76483b8d 0163a775b832604befbab533f7ce7a76 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_52fb2eb3.RNA-Seq.S26_L006_R1.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R1_001.fastq.gz 3671257257 FASTQ S26_L006_R1 submitted_unaligned CPTAC3 532616de-67ac-459a-afeb-b3153dd4f685 f27ad4a237e8c1d44fc5974c458792d0 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_52fb2eb3.RNA-Seq.S26_L006_R2.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R2_001.fastq.gz 4359870205 FASTQ S26_L006_R2 submitted_unaligned CPTAC3 570b6c64-408f-4ced-9426-d558d138f9a2 c25d9b3c8cf64843e715c77770002215 {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_52fb2eb3.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.transcriptome.gdc_realn.bam 9255053205 BAM transcriptome harmonized CPTAC3 a7ce1d90-cabc-4ac2-9712-234c2f3f587f e977cf29f9b639be64f61fcf9f4ae01c {"aliquot_tag": "DUP_52fb2eb3", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_9b5d259f.MethArray.Green.T C3N-00953 CCRCC Methylation_Array tumor CPT0065440009 204372030079_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dc95ffa1-a37d-4a0a-bcea-97117d80f7f1 92c6a16903d681396eb175cacb9f0d66 {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_9b5d259f.MethArray.Red.T C3N-00953 CCRCC Methylation_Array tumor CPT0065440009 204372030079_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 1014112e-9f81-4792-a507-89da52039f2c 79d7061616bf9ec7425a2fff4ef53cdd {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_9b5d259f.WGS.T C3N-00953 CCRCC WGS tumor CPT0065440009 CPT0065440009.WholeGenome.RP-2158.bam 22738300277 BAM submitted_aligned CPTAC3 661722f8-f4ee-4439-91de-0b86fba283cd 3d0dd6cf1bf6395a43fde67b7636fff0 {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_9b5d259f.WGS.T.hg38 C3N-00953 CCRCC WGS tumor CPT0065440009 baf79fe8-b7ef-4e69-98c2-81b4430452bd_wgs_gdc_realn.bam 66643031450 BAM harmonized CPTAC3 ebda4915-d39c-41d1-b761-508074371938 772dc61bcd48f1ece91df29e5088ae53 {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_9b5d259f.WXS.T C3N-00953 CCRCC WXS tumor CPT0065440009 CPT0065440009.WholeExome.RP-1303.bam 23354354468 BAM submitted_aligned CPTAC3 7b6c48a4-4bb3-4ec6-8548-c33158b4bfb2 7b4ce099ea6416d2f7b672a874684e8e {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_9b5d259f.WXS.T.hg38 C3N-00953 CCRCC WXS tumor CPT0065440009 baf79fe8-b7ef-4e69-98c2-81b4430452bd_wxs_gdc_realn.bam 31826473645 BAM harmonized CPTAC3 7221896a-5c33-4093-941b-94d2521363c2 d2ebc34ca09ab7ab5d69b275f8c2e6fb {"aliquot_tag": "DUP_9b5d259f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_be2380e.miRNA-Seq.S42_L005_R1.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065440006 200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L005_R1_001.unaln.bam 242922238 BAM S42_L005_R1 submitted_unaligned CPTAC3 cbd76193-7344-4a9e-aed4-4b72f0dd1092 248389b7e408cb7377e93a023373b6d1 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_be2380e.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065440006 d8700b66-5582-4fa4-9fe6-8d4ce0c5d1e2_mirnaseq_gdc_realn.bam 268478208 BAM harmonized CPTAC3 59b8e5b9-941a-4139-8131-a535795f9a00 dee7fe07c506be20107e4049a2244324 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_be2380e.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.chimeric.gdc_realn.bam 111658895 BAM chimeric harmonized CPTAC3 e33ceeed-7f49-4ead-93fd-9c7dd30cdd68 7842859339421c4199d446d20878141b {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_be2380e.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.genomic.gdc_realn.bam 7220140413 BAM genomic harmonized CPTAC3 aaf2369d-ce14-44a9-9ccf-43ad2c788354 7b0382995a1281db94753ad515ad8c20 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_be2380e.RNA-Seq.S34_L005_R1.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R1_001.fastq.gz 3361203837 FASTQ S34_L005_R1 submitted_unaligned CPTAC3 f024b599-90cb-4640-a907-324ea7ef0a95 244dcce86bdb30114d5f9c2c24ef488b {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_be2380e.RNA-Seq.S34_L005_R2.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R2_001.fastq.gz 3902270374 FASTQ S34_L005_R2 submitted_unaligned CPTAC3 0bd50e24-a6a0-4c2c-ab7b-8d212adbce91 af7b7958103319039b0e20038a2596c2 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S34", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_be2380e.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.transcriptome.gdc_realn.bam 9358608386 BAM transcriptome harmonized CPTAC3 d74ecc5c-fa7c-41a0-814f-0891c2341b9a 8143c4e1f8ba87059e8a9a791d6c75b0 {"aliquot_tag": "DUP_be2380e", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_c2443322.MethArray.Green.T C3N-00953 CCRCC Methylation_Array tumor CPT0065220009 204372030127_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4fbe467a-f9ce-440d-949f-4470601b6778 bec0881098a464248c92ea4fca3fee31 {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_c2443322.MethArray.Red.T C3N-00953 CCRCC Methylation_Array tumor CPT0065220009 204372030127_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 6014cf5a-7814-4eb5-b053-5c9b9dc4aa1f ba053948a18662f64c8194dd0e87909b {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_c2443322.WGS.T C3N-00953 CCRCC WGS tumor CPT0065220009 CPT0065220009.WholeGenome.RP-2158.bam 30629407503 BAM submitted_aligned CPTAC3 cfd48475-ba37-476e-8791-cd777d460882 09ba137d0087619a8538403fc42f484f {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_c2443322.WGS.T.hg38 C3N-00953 CCRCC WGS tumor CPT0065220009 89529584-f16b-447e-aad4-e01b365c8e52_wgs_gdc_realn.bam 92962091824 BAM harmonized CPTAC3 dcaf7454-8905-4b55-9b3b-c032168d8822 8f4b8ca79de491b2ea68b8054e3aabdb {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_c2443322.WXS.T C3N-00953 CCRCC WXS tumor CPT0065220009 CPT0065220009.WholeExome.RP-1303.bam 24402496408 BAM submitted_aligned CPTAC3 0c67bf6e-4689-405c-92dc-6392774e8b93 e6e1ba3d4fcf103927572105040b6c83 {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.DUP_c2443322.WXS.T.hg38 C3N-00953 CCRCC WXS tumor CPT0065220009 89529584-f16b-447e-aad4-e01b365c8e52_wxs_gdc_realn.bam 34519222652 BAM harmonized CPTAC3 8fc19554-9c84-4a85-8074-5078ba531805 7ebdb0a20cd9d1b83da1f04c86b97aa1 {"aliquot_tag": "DUP_c2443322", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.MethArray.Green.T C3N-00953 CCRCC Methylation_Array tumor CPT0065430009 202163530118_R05C01_Grn.idat 13676245 IDAT Green NA CPTAC3 01385fca-c18f-437d-847e-b4a168c46193 c8a6ad80a362d33e8c6f59acbaa709bb {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.MethArray.Red.T C3N-00953 CCRCC Methylation_Array tumor CPT0065430009 202163530118_R05C01_Red.idat 13676245 IDAT Red NA CPTAC3 b60b78f6-f562-41fc-9c3d-b7ce73b47b44 14b4c26b8ee57e6ef0ac9bb4d08f64b6 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.miRNA-Seq.S27_L005_R1.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065430006 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L005_R1_001.unaln.bam 274368446 BAM S27_L005_R1 submitted_unaligned CPTAC3 bc67f62c-cdac-4c8d-96a1-6bcc56556b59 802cb4dc4e0ee9c00a3e4692f5d20eee {"aliquot_tag": "ALQ_b9c2e41e", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065430006 9ec24e09-2d8f-44c4-85c5-b03d7641ebe9_mirnaseq_gdc_realn.bam 298301798 BAM harmonized CPTAC3 a8e6b3de-247e-4414-9bd0-307d47d08c42 8c49338dff346060a020f8bba4c6403b {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.chimeric.gdc_realn.bam 138344359 BAM chimeric harmonized CPTAC3 f59b0dfc-d32d-49ed-93ec-4180eef59d10 dd5096025d817dacbb69d4260af1eca9 {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.genomic.gdc_realn.bam 9040447265 BAM genomic harmonized CPTAC3 8f6e2370-0450-4e70-bd7d-e8c432090d17 b527b8a9df46d84cffae36f986517fba {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.RNA-Seq.S9_L007_R1.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R1_001.fastq.gz 4660604210 FASTQ S9_L007_R1 submitted_unaligned CPTAC3 fddb0068-8209-43fb-b1bb-45f70688ba24 0a914855f1a996078b6de3d7a194d339 {"aliquot_tag": "ALQ_b9c2e41e", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.RNA-Seq.S9_L007_R2.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R2_001.fastq.gz 5067259916 FASTQ S9_L007_R2 submitted_unaligned CPTAC3 9cec05f2-4b61-4862-bff8-4d0b9e01a47f c137ad77f4e4d7ee97a64716a5abc0b7 {"aliquot_tag": "ALQ_b9c2e41e", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.transcriptome.gdc_realn.bam 11558312163 BAM transcriptome harmonized CPTAC3 fc444489-061c-453d-87e4-6d858b41b377 0d4ff309bcdd6000001f4343157fa881 {"aliquot_tag": "ALQ_b9c2e41e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.WGS.N C3N-00953 CCRCC WGS blood_normal CPT0070680002 CPT0070680002.WholeGenome.RP-1303.bam 66782233531 BAM submitted_aligned CPTAC3 c1fc0f6e-0230-4af6-b344-1679d6405ae1 c481d3af84f3a29c8eb655bf6746647b {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00953.WGS.N.hg38 C3N-00953 CCRCC WGS blood_normal CPT0070680002 c1eb9e6d-669b-4d1c-83c6-9710f4c80717_gdc_realn.bam 103070094683 BAM harmonized CPTAC3 6dc712f1-4606-47d3-8671-a62035b73e82 c0a9a28de767435c2ea2861ef5ca47b3 {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00953.WGS.T C3N-00953 CCRCC WGS tumor CPT0065430009 CPT0065430009.WholeGenome.RP-1303.bam 68586796640 BAM submitted_aligned CPTAC3 e0206fd8-977b-403f-8136-3acb47add764 2b0be826513fa0c5eef2eaadef97ff70 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.WGS.T.hg38 C3N-00953 CCRCC WGS tumor CPT0065430009 91cf314a-8f4d-4f05-bd33-1b7eef5974af_gdc_realn.bam 103045029409 BAM harmonized CPTAC3 2b435898-48e1-4a4c-983e-5b250ce6e3e4 4ed9222444a1e78ec2f0f334ea2b2d16 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.WXS.N C3N-00953 CCRCC WXS blood_normal CPT0070680002 CPT0070680002.WholeExome.RP-1303.bam 37309118486 BAM submitted_aligned CPTAC3 eb1bbff3-def7-4677-963b-64483ff6694d f26c9ec4369e5bd81f8824c13b1a7943 {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00953.WXS.N.hg38 C3N-00953 CCRCC WXS blood_normal CPT0070680002 c1eb9e6d-669b-4d1c-83c6-9710f4c80717_gdc_realn.bam 52512534170 BAM harmonized CPTAC3 dceac80d-e43b-4f91-a3da-34fa539976f3 a18b700045f0d130fb868ff8528b6553 {"aliquot_tag": "ALQ_1a259f24", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00953.WXS.T C3N-00953 CCRCC WXS tumor CPT0065430009 CPT0065430009.WholeExome.RP-1303.bam 26165634565 BAM submitted_aligned CPTAC3 34af8b1f-d82e-4681-8cad-76b86b1ee0bb c86c690bd6a7d5e924797139ba54b6c5 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00953.WXS.T.hg38 C3N-00953 CCRCC WXS tumor CPT0065430009 91cf314a-8f4d-4f05-bd33-1b7eef5974af_gdc_realn.bam 35792432243 BAM harmonized CPTAC3 23178ce9-1b2c-4276-a96d-1bf7e6c5e740 8910a20c507fbad498044a73f652af00 {"aliquot_tag": "ALQ_297df98f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00954.MethArray.Green.A C3N-00954 PDA Methylation_Array tissue_normal CPT0065100006 203561620052_R08C01_Grn.idat 13676212 IDAT Green NA CPTAC3 e5326f61-c16e-4782-b000-6f054996c5e8 86187d3285503ee747b6acad7c5d5409 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.MethArray.Green.T C3N-00954 PDA Methylation_Array tumor CPT0065080013 202176290105_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d0bd7369-3496-4abe-b2e6-07a84473890d 6174daf0699b084d315e49c40743301e {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.MethArray.Red.A C3N-00954 PDA Methylation_Array tissue_normal CPT0065100006 203561620052_R08C01_Red.idat 13676212 IDAT Red NA CPTAC3 be0d3e09-8aba-4686-a4c8-4ce66a3afa04 a3982dbe4e68781c02e29992eca7d6a7 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.MethArray.Red.T C3N-00954 PDA Methylation_Array tumor CPT0065080013 202176290105_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 7b53d4f7-c6c3-4412-9b05-7c90bd921881 5edd2e482b9b73a6ae7efd40557e6158 {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.miRNA-Seq.A.hg38 C3N-00954 PDA miRNA-Seq tissue_normal CPT0065100009 1f14966f-789b-4626-892d-0e322b528aba_mirnaseq_gdc_realn.bam 251184535 BAM harmonized CPTAC3 d30019a6-032b-4c60-bf16-c701505b424f c13060e6109e97cf8b589628838f71d1 {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.miRNA-Seq.S23_L001_R1.A C3N-00954 PDA miRNA-Seq tissue_normal CPT0065100009 181108_UNC31-K00269_0162_AH255GBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 232412201 BAM S23_L001_R1 submitted_unaligned CPTAC3 4640af1b-5537-42ea-843d-64be1133cb21 cb89478f005966c8a314ec4ad6265173 {"aliquot_tag": "ALQ_3e1012ec", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.miRNA-Seq.S2_L001_R1.T C3N-00954 PDA miRNA-Seq tumor CPT0065080006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L001_R1_001.unaln.bam 251482663 BAM S2_L001_R1 submitted_unaligned CPTAC3 2ae8c6c2-a871-4ad3-b04a-e30e8a3ceb17 d54577db885cc26c82d51859601c6d19 {"aliquot_tag": "ALQ_55839719", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.miRNA-Seq.T.hg38 C3N-00954 PDA miRNA-Seq tumor CPT0065080006 dfe002b1-bc33-480a-944f-f93a1be777ee_mirnaseq_gdc_realn.bam 278405547 BAM harmonized CPTAC3 8c9a4a5a-5fbc-4d3c-bd4b-60e5bf7e58ea 3305018d4b2d1d793acaaa60f41a633e {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.RNA-Seq.chimeric.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.chimeric.gdc_realn.bam 160906254 BAM chimeric harmonized CPTAC3 a24aab78-8d04-41c3-8db8-bc535d5aed86 1e41fc9839c6c996106e53c04e304a04 {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.RNA-Seq.chimeric.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.chimeric.gdc_realn.bam 55655598 BAM chimeric harmonized CPTAC3 baa66fd2-f07e-4c4b-9431-e5066e5e5d68 b0f9ec7a39348a646d28cd53cd5fca1c {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.RNA-Seq.genomic.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.genomic.gdc_realn.bam 12069965447 BAM genomic harmonized CPTAC3 44448d98-76db-41a2-8bd7-a080eef9ff9d d4ce827db4547ca92aaff7c2c62e4d05 {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.RNA-Seq.genomic.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.genomic.gdc_realn.bam 7537681616 BAM genomic harmonized CPTAC3 ae8d9b19-27a0-40cc-a39f-d311e0985599 6ad8ad3a8c6ff0633a15d477f8fc9fab {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.RNA-Seq.S2_L008_R1.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R1_001.fastq.gz 5887497961 FASTQ S2_L008_R1 submitted_unaligned CPTAC3 367a3e0d-14bc-4611-a9ef-7e0ad04447da 3d6a2766136e5a9ba7baf1b4a519414b {"aliquot_tag": "ALQ_3e1012ec", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.RNA-Seq.S2_L008_R2.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R2_001.fastq.gz 6311998386 FASTQ S2_L008_R2 submitted_unaligned CPTAC3 00fdc20d-e0f0-42f5-b1b7-bd214d8eaff8 90ab71dc5be38bca7bd30cc130ae7d63 {"aliquot_tag": "ALQ_3e1012ec", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.RNA-Seq.S7_L002_R1.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3472421229 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 e6323501-1e7d-4e7d-9b40-f61d8dff75c8 c0b8fdc740ed6520d3fbb8c5ec107796 {"aliquot_tag": "ALQ_55839719", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.RNA-Seq.S7_L002_R2.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3784810336 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 a7e74dfb-0fd4-48b1-b5ef-9019201b7a2a f7efd634d728fbba1517eeba2335f87f {"aliquot_tag": "ALQ_55839719", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.RNA-Seq.transcriptome.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.transcriptome.gdc_realn.bam 13714869475 BAM transcriptome harmonized CPTAC3 6f0669d4-1b02-4e8b-8229-d97d27cf6ab6 4b62528f51bc74663a5fc2df968dbdee {"aliquot_tag": "ALQ_3e1012ec", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.RNA-Seq.transcriptome.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.transcriptome.gdc_realn.bam 9401403320 BAM transcriptome harmonized CPTAC3 c1c6f4a0-34e1-403a-b879-ef76af493057 a4185d6faca912ff0613b4214c524845 {"aliquot_tag": "ALQ_55839719", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WGS.A C3N-00954 PDA WGS tissue_normal CPT0065100006 CPT0065100006.WholeGenome.RP-1303.bam 54697256827 BAM submitted_aligned CPTAC3 157047e3-ed9c-4920-8aac-d5e97fe669d0 5ce70c29f8e8ec61cbd878ed76896276 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.WGS.A.hg38 C3N-00954 PDA WGS tissue_normal CPT0065100006 de354132-ab9c-4621-b541-f7984ebb156e_wgs_gdc_realn.bam 79909132589 BAM harmonized CPTAC3 de47c75b-7cf9-4e0e-b30e-818dd7351e87 1bd3c3b2cfbf78f976d9ac76db23973e {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.WGS.N C3N-00954 PDA WGS blood_normal CPT0070660002 CPT0070660002.WholeGenome.RP-1303.bam 76867918749 BAM submitted_aligned CPTAC3 ff2840a5-0755-447d-a56e-ea73da42499a fbd7bb0d303e11d3645ab8e9fe39ab56 {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00954.WGS.N.hg38 C3N-00954 PDA WGS blood_normal CPT0070660002 b007b2b2-9c17-4025-a1fb-4eb517ff6157_gdc_realn.bam 117637601954 BAM harmonized CPTAC3 6ceacd16-83bf-4d23-98a5-981312b97561 043adddb8aef262189649097c68a888f {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00954.WGS.T C3N-00954 PDA WGS tumor CPT0065080013_1 CPT0065080013_1.WholeGenome.RP-1303.bam 132365859924 BAM submitted_aligned CPTAC3 2e12c833-ec17-4a0a-b12b-a01d6603dd3f e317a353b0548b3ae3482fb0de6cba16 {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WGS.T C3N-00954 PDA WGS tumor CPT0065080013 CPT0065080013.WholeGenome.RP-1303.bam 79319864131 BAM submitted_aligned CPTAC3 2a4fbedb-0519-4a22-8855-837c42f2b09c 2bd95e90698979e1de58550168bbf33a {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WGS.T.hg38 C3N-00954 PDA WGS tumor CPT0065080013_1 eb3df28f-f452-47fa-8b1a-290e0fdd24b4_wgs_gdc_realn.bam 198987595167 BAM harmonized CPTAC3 4f3f19c0-b3b1-4151-b60c-55e663cf3498 b1e968b82d004fe12fb494d0c140255a {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WGS.T.hg38 C3N-00954 PDA WGS tumor CPT0065080013 624dfe3b-aeb9-4927-8970-215b28ee94f1_gdc_realn.bam 121817075664 BAM harmonized CPTAC3 96d6103d-2709-43b0-808a-0f61e0fb7417 60198b3e2f1ef461c6485ddf4672dc54 {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WXS.A C3N-00954 PDA WXS tissue_normal CPT0065100006 CPT0065100006.WholeExome.RP-1303.bam 43512444381 BAM submitted_aligned CPTAC3 b558d1cb-7366-407a-8c7f-2c746607997c b301fc9e113d3913b9ab01ef4182eb22 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.WXS.A.hg38 C3N-00954 PDA WXS tissue_normal CPT0065100006 de354132-ab9c-4621-b541-f7984ebb156e_wxs_gdc_realn.bam 59603851716 BAM harmonized CPTAC3 1d00f4d3-8a04-42d1-858a-59c89e39d056 9e26941d4470685e12540081baf34658 {"aliquot_tag": "ALQ_aeaf0f7d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00954.WXS.N C3N-00954 PDA WXS blood_normal CPT0070660002 CPT0070660002.WholeExome.RP-1303.bam 41129968108 BAM submitted_aligned CPTAC3 14984c7c-87c8-4ab1-8e09-b143ea4c6652 f40165b7899ecc6cd602a0d7ec289ac9 {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00954.WXS.N.hg38 C3N-00954 PDA WXS blood_normal CPT0070660002 b007b2b2-9c17-4025-a1fb-4eb517ff6157_gdc_realn.bam 56681893693 BAM harmonized CPTAC3 d5eeb605-1ce5-464b-898e-ad22e5ea45af 38b45c0bce2e045a34140303dbbbc994 {"aliquot_tag": "ALQ_a5152145", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00954.WXS.T C3N-00954 PDA WXS tumor CPT0065080013_1 CPT0065080013_1.WholeExome.RP-1303.bam 54955919027 BAM submitted_aligned CPTAC3 8cbc1a02-ab24-4933-9873-f24956cff99c c92450cc944d814c337013b226d8ee92 {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WXS.T C3N-00954 PDA WXS tumor CPT0065080013 CPT0065080013.WholeExome.RP-1303.bam 25320800889 BAM submitted_aligned CPTAC3 d48c2290-6dc9-48d8-8b2e-89a8df59026c 2a8f0a47a5775cdfaf3e02fec185a56a {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WXS.T.hg38 C3N-00954 PDA WXS tumor CPT0065080013_1 eb3df28f-f452-47fa-8b1a-290e0fdd24b4_wxs_gdc_realn.bam 75506601837 BAM harmonized CPTAC3 47b92164-64e3-479d-83f5-4678d6bdd3fb 33e9dbceb9ea8f4f52fed839bf0e2c6d {"aliquot_tag": "ALQ_66380cac", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00954.WXS.T.hg38 C3N-00954 PDA WXS tumor CPT0065080013 624dfe3b-aeb9-4927-8970-215b28ee94f1_gdc_realn.bam 34845914451 BAM harmonized CPTAC3 36ed1056-9186-4dba-b8ff-ea9d345cd182 a5840618c509637ec2cfd2590b69470d {"aliquot_tag": "ALQ_3cf252d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00957.ADD_40a3dad7.MethArray.Green.T C3N-00957 PDA Methylation_Array tumor CPT0089720009 202234360029_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 84bcdede-25a8-450e-9067-29f65d95c4ee bf7773074dfad9eeb5484fb1f673f4d0 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.ADD_40a3dad7.MethArray.Red.T C3N-00957 PDA Methylation_Array tumor CPT0089720009 202234360029_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 e5a6177f-5cfc-43e5-8f97-31d95493bba0 dcdff9cca8cbce7e224ae1be720ad02a {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.ADD_40a3dad7.WGS.T C3N-00957 PDA WGS tumor CPT0089720009 CPT0089720009.WholeGenome.RP-1303.bam 58231483153 BAM submitted_aligned CPTAC3 c52ca1e6-4a57-4225-8803-3c6bb70fd9c9 4f20b8da86dbf95f8a8730671203c6de {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.ADD_40a3dad7.WGS.T.hg38 C3N-00957 PDA WGS tumor CPT0089720009 09adfee1-caef-414c-b95a-68ed0ce391a8_wgs_gdc_realn.bam 85329545588 BAM harmonized CPTAC3 9c4d41ba-8a18-4928-b100-893b1858dbd9 1f908d02518f681349b2251c32d93400 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.ADD_40a3dad7.WXS.T C3N-00957 PDA WXS tumor CPT0089720009 CPT0089720009.WholeExome.RP-1303.bam 33457437771 BAM submitted_aligned CPTAC3 2a773ca9-0cf1-48ab-833c-22779f2a26b9 c2591fedaead142f31b34447539e2cb1 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.ADD_40a3dad7.WXS.T.hg38 C3N-00957 PDA WXS tumor CPT0089720009 09adfee1-caef-414c-b95a-68ed0ce391a8_wxs_gdc_realn.bam 45791099037 BAM harmonized CPTAC3 693cdc51-ab9c-4b7e-988b-39c94028c251 ac7ff412bcda32731827496dedac0720 {"aliquot_tag": "ADD_40a3dad7", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.MethArray.Green.A C3N-00957 PDA Methylation_Array tissue_normal CPT0089750007 203561620053_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a77e3b38-37bd-4c62-8ea1-ceb5923dd152 472e876682681f358fdd383e0080c994 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00957.MethArray.Red.A C3N-00957 PDA Methylation_Array tissue_normal CPT0089750007 203561620053_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 5546d99a-5c9e-48c9-abc7-e94e2ce42e59 10608d4cb7290c3ce20549d16cadd650 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00957.miRNA-Seq.S5_L007_R1.T C3N-00957 PDA miRNA-Seq tumor CPT0089720006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAACTA_S5_L007_R1_001.unaln.bam 264781864 BAM S5_L007_R1 submitted_unaligned CPTAC3 998c8a92-92c9-4656-9368-30f7752bdc7c 97573249e020dec33843dbdfbe57a161 {"aliquot_tag": "ALQ_d01cc746", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.miRNA-Seq.T.hg38 C3N-00957 PDA miRNA-Seq tumor CPT0089720006 94568398-b852-4380-b8d2-5be89c73b351_mirnaseq_gdc_realn.bam 285819047 BAM harmonized CPTAC3 d83bf88a-b4f3-4e27-987c-ad38affb09ad 1dbe84040a571e631690fcba12001553 {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.RNA-Seq.chimeric.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.chimeric.gdc_realn.bam 38434638 BAM chimeric harmonized CPTAC3 3064efaf-0547-4d92-9f68-76d5c0876d61 03e3cfb4d280763baa3db038b173d20a {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.RNA-Seq.genomic.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.genomic.gdc_realn.bam 9407212831 BAM genomic harmonized CPTAC3 32b9eb2a-7525-404d-bf08-987eeb117242 ab8eec257c3a1a0446450ac58b1866ec {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.RNA-Seq.S3_L006_R1.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R1_001.fastq.gz 3911560268 FASTQ S3_L006_R1 submitted_unaligned CPTAC3 e9fa0d97-bade-42eb-b268-673f13619093 32fa47e32cf767c4c49e7346f3df4dd1 {"aliquot_tag": "ALQ_d01cc746", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.RNA-Seq.S3_L006_R2.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R2_001.fastq.gz 4361482381 FASTQ S3_L006_R2 submitted_unaligned CPTAC3 3320297a-0634-4b50-921b-d2619774fab7 0f70fece8ff5a8e3460b5af19b7ebaa2 {"aliquot_tag": "ALQ_d01cc746", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.RNA-Seq.transcriptome.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.transcriptome.gdc_realn.bam 10235594000 BAM transcriptome harmonized CPTAC3 27520bb6-62f1-4abb-894f-49688c6ceab2 22db5a93f2765ddd0c6da9c47d1c8dae {"aliquot_tag": "ALQ_d01cc746", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.WGS.A C3N-00957 PDA WGS tissue_normal CPT0089750007 CPT0089750007.WholeGenome.RP-1303.bam 56148012836 BAM submitted_aligned CPTAC3 23f21231-9f0c-412f-b03f-987d7d583aba 2a7b76fd359d08996a11fcb4efa7894b {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00957.WGS.A.hg38 C3N-00957 PDA WGS tissue_normal CPT0089750007 64db149d-cd1f-43a2-bcdc-1765ac672776_wgs_gdc_realn.bam 82332167189 BAM harmonized CPTAC3 dc59cd3e-6b2f-4427-a800-bb0ce2129f01 de098e7769517c67457149b1afc4374d {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00957.WGS.N C3N-00957 PDA WGS blood_normal CPT0091380002 CPT0091380002.WholeGenome.RP-1303.bam 59032000458 BAM submitted_aligned CPTAC3 0b1769a1-e60a-4d07-ab34-e5490f59e65f db2c8e7704c53f8b456fdd73595a7e18 {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00957.WGS.N.hg38 C3N-00957 PDA WGS blood_normal CPT0091380002 e57bbda9-d5ab-49b3-a731-7b3050424f62_wgs_gdc_realn.bam 87688384544 BAM harmonized CPTAC3 77936b8e-3991-4d6c-b393-266344ba2fc9 4b015a0a1f4d910b06ae88b5f1b5b2dc {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00957.WXS.A C3N-00957 PDA WXS tissue_normal CPT0089750007 CPT0089750007.WholeExome.RP-1303.bam 26521160811 BAM submitted_aligned CPTAC3 d98c509c-a180-460f-9975-2d329ab05d09 47ec4972f7dd41dc5057f85826cb74a6 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00957.WXS.A.hg38 C3N-00957 PDA WXS tissue_normal CPT0089750007 64db149d-cd1f-43a2-bcdc-1765ac672776_wxs_gdc_realn.bam 35960050006 BAM harmonized CPTAC3 c12e493e-52c3-4ea4-931f-cd736bbef506 c27d63409f00faf35616f8efb46b8e01 {"aliquot_tag": "ALQ_153b2bc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00957.WXS.N C3N-00957 PDA WXS blood_normal CPT0091380002 CPT0091380002.WholeExome.RP-1303.bam 39068976605 BAM submitted_aligned CPTAC3 75fd5e68-0512-4ed4-b7c4-01511f755f35 a677f5dcbbf5281b87639044bfd3da7c {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00957.WXS.N.hg38 C3N-00957 PDA WXS blood_normal CPT0091380002 e57bbda9-d5ab-49b3-a731-7b3050424f62_wxs_gdc_realn.bam 53899006822 BAM harmonized CPTAC3 aa13a00e-9297-410e-af11-4695f7753c31 9ee4a6f793dad3e0686fca77a8f18abe {"aliquot_tag": "ALQ_f9151711", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00957.WXS.T C3N-00957 PDA WXS tumor CPT0089720009_1 CPT0089720009_1.WholeExome.RP-1303.bam 57261185706 BAM submitted_aligned CPTAC3 22b06158-8c7d-461a-ac42-4b22e48b4f09 97e4466170795b16c2da2de5243146f0 {"aliquot_tag": "ALQ_855b7bef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00957.WXS.T.hg38 C3N-00957 PDA WXS tumor CPT0089720009_1 35d8f6b0-b20d-4676-bb76-9416d7a5bd11_wxs_gdc_realn.bam 78682798708 BAM harmonized CPTAC3 4d3af9f7-b24b-40fd-8471-5d5e4270d98b 67e32bcbdda3e4cb66aa1602c4185f61 {"aliquot_tag": "ALQ_855b7bef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00958.MethArray.Green.A C3N-00958 CCRCC Methylation_Array tissue_normal CPT0384760006 205549610123_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 39a373e4-9a76-40f2-a151-b8b89784bf59 ca944151feb502699ed5fb897e980f8c {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.MethArray.Green.T C3N-00958 CCRCC Methylation_Array tumor CPT0384730009 205549600088_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9e8f841c-3f4a-4c6c-84b5-f93f54a4dc2f 2c4207fd5ed9dbb6096e270366dc5ae0 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.MethArray.Red.A C3N-00958 CCRCC Methylation_Array tissue_normal CPT0384760006 205549610123_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 765f9529-2b71-4e14-94b2-1e6912ef2128 31701a91e4c6dd8b69a99f1aa06f6302 {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.MethArray.Red.T C3N-00958 CCRCC Methylation_Array tumor CPT0384730009 205549600088_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 67e66ff1-e803-4a66-83df-33fc88e08576 066419f6a7d69c7fe93f53c26a059f37 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.miRNA-Seq.A.hg38 C3N-00958 CCRCC miRNA-Seq tissue_normal CPT0384760009 fd0b5920-c0fe-409c-9514-fad860d2c5d4_mirnaseq_gdc_realn.bam 326468136 BAM harmonized CPTAC3 e93777c0-2db0-43a9-88d5-817278309c48 d7f5998749d52b37b0eefb3ac9c971f4 {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.miRNA-Seq.S18_L001_R1.T C3N-00958 CCRCC miRNA-Seq tumor CPT0384730006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTGGCC_S18_L001_R1_001.unaln.bam 231829224 BAM S18_L001_R1 submitted_unaligned CPTAC3 ee5b5b30-92f6-412b-a45a-c85cc1e28ba1 f1a8cf57f7da74b39c2b38999ad71957 {"aliquot_tag": "ALQ_b526b3f3", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.miRNA-Seq.S33_L003_R1.A C3N-00958 CCRCC miRNA-Seq tissue_normal CPT0384760009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TACAGC_S33_L003_R1_001.unaln.bam 303984173 BAM S33_L003_R1 submitted_unaligned CPTAC3 db0d8071-e40c-4050-8e58-544521afa64f 48a321800b222fcecaa51ad19a5bf2b4 {"aliquot_tag": "ALQ_ed792112", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.miRNA-Seq.T.hg38 C3N-00958 CCRCC miRNA-Seq tumor CPT0384730006 701e7361-8bfa-44c3-84bc-cefd09a71037_mirnaseq_gdc_realn.bam 249318853 BAM harmonized CPTAC3 1f1a8a0f-f23a-47ad-883f-700b50eb0129 4e4f4bfec53bb9da8bdced13f5378968 {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.RNA-Seq.chimeric.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.chimeric.gdc_realn.bam 406414048 BAM chimeric harmonized CPTAC3 01579f9d-8d6d-47b5-95b2-b96aa7ffa09a 018dfac89f0888941e61e23a503293cf {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.RNA-Seq.chimeric.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.chimeric.gdc_realn.bam 354554705 BAM chimeric harmonized CPTAC3 eb4fee32-453f-4095-b2bd-39978030a442 6dea2039df2ce934a7a2f3a9d0788601 {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.RNA-Seq.genomic.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.genomic.gdc_realn.bam 9712596117 BAM genomic harmonized CPTAC3 9f05bc72-82af-406a-9971-513ac864b894 7fd1754cd6c4ea63560ae52aae40f423 {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.RNA-Seq.genomic.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.genomic.gdc_realn.bam 7092949844 BAM genomic harmonized CPTAC3 42070ca2-797b-4f58-95db-a4dc2a85df63 76983ac0523dc6cd98fcd6ca60dd4094 {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.RNA-Seq.S14_L005_R1.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R1_001.fastq.gz 4609680825 FASTQ S14_L005_R1 submitted_unaligned CPTAC3 e5b55cfb-c53e-4b95-bbf1-b60345ff71cf 69f4a3c8aadc666396aeae993b5227ad {"aliquot_tag": "ALQ_ed792112", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.RNA-Seq.S14_L005_R2.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R2_001.fastq.gz 5038662955 FASTQ S14_L005_R2 submitted_unaligned CPTAC3 a2f5c1ad-253b-4182-a13e-5f5b196a9c78 abf3c483e912fde9010f02de5684c896 {"aliquot_tag": "ALQ_ed792112", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.RNA-Seq.S19_L005_R1.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R1_001.fastq.gz 3338074856 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 248ac505-2412-46ed-ac68-0f3cc4e95a28 3ff6251b9bff97a0bca885025ed5240e {"aliquot_tag": "ALQ_b526b3f3", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.RNA-Seq.S19_L005_R2.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R2_001.fastq.gz 3802566466 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 d4aa189b-410b-4f58-834e-1f3cd6e62ed6 cdf7798da50f8d249905edbfba5f0063 {"aliquot_tag": "ALQ_b526b3f3", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.RNA-Seq.transcriptome.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.transcriptome.gdc_realn.bam 11068117281 BAM transcriptome harmonized CPTAC3 017eee61-551e-4912-9a2a-2bbf7288a37a 4cf456afada9bb9fb9d1ee81fd5f4b2f {"aliquot_tag": "ALQ_ed792112", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.RNA-Seq.transcriptome.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.transcriptome.gdc_realn.bam 8684772264 BAM transcriptome harmonized CPTAC3 d0f6c388-b7d7-44cf-8032-9c60cfb3534f 0e572387907525824d2416c773e3de6d {"aliquot_tag": "ALQ_b526b3f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.WGS.N C3N-00958 CCRCC WGS blood_normal CPT0385460002 CPT0385460002.WholeGenome.RP-2158.bam 28482936401 BAM submitted_aligned CPTAC3 bd01bdf4-aa5e-4692-84d8-805c1c150ea6 d9c073f52058eb2c0524680b745d21fe {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00958.WGS.N.hg38 C3N-00958 CCRCC WGS blood_normal CPT0385460002 e2813bc9-1b08-47b5-9cd0-62ee378b28e5_wgs_gdc_realn.bam 86213244684 BAM harmonized CPTAC3 125f9e07-0b01-46f0-8c7b-190eee3598bc f16ef3cdbe51585ded77b20c486f7c25 {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00958.WGS.T C3N-00958 CCRCC WGS tumor CPT0384730009 CPT0384730009.WholeGenome.RP-2158.bam 19627147137 BAM submitted_aligned CPTAC3 3b0c06cf-9208-412c-9e9a-61c73f3d1556 59f53f023e6b995d90806796a41861cf {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.WGS.T.hg38 C3N-00958 CCRCC WGS tumor CPT0384730009 24b3e2a9-789b-4201-89bd-e75c7b215c3a_wgs_gdc_realn.bam 57653000237 BAM harmonized CPTAC3 6bf0484c-cff7-439a-85bc-20cd3079e212 eeb4be310c9991e777dc81aa97e0e9e3 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.WXS.A C3N-00958 CCRCC WXS tissue_normal CPT0384760006 CPT0384760006.WholeExome.RP-1303.bam 22793942592 BAM submitted_aligned CPTAC3 769cabc0-02ef-40a6-a2eb-227db8aaf719 c286c69cec7d3f603159e6ce4f2e6155 {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00958.WXS.A.hg38 C3N-00958 CCRCC WXS tissue_normal CPT0384760006 1480ef47-1bae-453a-a84b-6a4eb16664a0_wxs_gdc_realn.bam 31100931334 BAM harmonized CPTAC3 9e6c01a7-d4d3-4642-99d5-7af30e991b26 36f96566ce20ba52ac1a42d176a39d21 {"aliquot_tag": "ALQ_7dc63c83", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-00958.WXS.N C3N-00958 CCRCC WXS blood_normal CPT0385460002 CPT0385460002.WholeExome.RP-1303.bam 23084575445 BAM submitted_aligned CPTAC3 09469947-9cda-4f67-9e36-a702b99b911f 8eff8531de9258e3065f7ddbcedb0239 {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-00958.WXS.N.hg38 C3N-00958 CCRCC WXS blood_normal CPT0385460002 e2813bc9-1b08-47b5-9cd0-62ee378b28e5_wxs_gdc_realn.bam 31465550771 BAM harmonized CPTAC3 505b1007-5857-4954-85e9-a1c6fe1c0679 d626e26d609d82964f6094f3318ca1a2 {"aliquot_tag": "ALQ_5a488180", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-00958.WXS.T C3N-00958 CCRCC WXS tumor CPT0384730009 CPT0384730009.WholeExome.RP-1303.bam 26167824755 BAM submitted_aligned CPTAC3 38972608-4f70-41bb-9250-c7a47a7e693f 8d9f42daff85aabde6cb48a378bd7cc5 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00958.WXS.T.hg38 C3N-00958 CCRCC WXS tumor CPT0384730009 24b3e2a9-789b-4201-89bd-e75c7b215c3a_wxs_gdc_realn.bam 37269806487 BAM harmonized CPTAC3 5d5a3f62-fef8-4a16-a210-35edeef1ac97 fcc2d122e798bd21e9dc97b94aaeac84 {"aliquot_tag": "ALQ_2599ae62", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-00959.MethArray.Green.A C3N-00959 LUAD Methylation_Array tissue_normal CPT0079850008 203028200048_R06C01_Grn.idat 13676232 IDAT Green NA CPTAC3 c0d59ff5-47b7-4a29-bad9-0210a099ddb5 d67473439d5cc3221bfaa38462300a4e {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.MethArray.Green.T C3N-00959 LUAD Methylation_Array tumor CPT0079830009 202176290046_R05C01_Grn.idat 13676215 IDAT Green NA CPTAC3 5830bb6c-782a-4d02-9d2e-3b730426dc69 18b36176273117864d5688f5bd84d46e {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.MethArray.Red.A C3N-00959 LUAD Methylation_Array tissue_normal CPT0079850008 203028200048_R06C01_Red.idat 13676232 IDAT Red NA CPTAC3 79abf28b-da59-4634-902c-66bc9a280fb8 82790d3b170ed1c9c241786d7e083246 {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.MethArray.Red.T C3N-00959 LUAD Methylation_Array tumor CPT0079830009 202176290046_R05C01_Red.idat 13676215 IDAT Red NA CPTAC3 ca1d14a3-b3e7-41f2-8014-27be07a30449 aa93ca5a74ad462b70f5b7de1d8f9d83 {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.miRNA-Seq.A.hg38 C3N-00959 LUAD miRNA-Seq tissue_normal CPT0079850005 e85a667a-b5a6-41b6-9064-33b4b253e2b2_mirnaseq_gdc_realn.bam 284573652 BAM harmonized CPTAC3 8f3bad73-cebc-44e2-b7e3-b5ce4a282c49 4ca994e6be4eaaa1fd25cfe9af640af1 {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.miRNA-Seq.S14_L001_R1.T C3N-00959 LUAD miRNA-Seq tumor CPT0079830006 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L001_R1_001.unaln.bam 216850708 BAM S14_L001_R1 submitted_unaligned CPTAC3 c4dea5a3-9024-4a6d-833d-2f7e316cb5c1 fd2e11cf1e34901975bc7ddbec34ae3f {"aliquot_tag": "ALQ_c50a4e8f", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.miRNA-Seq.S36_L008_R1.A C3N-00959 LUAD miRNA-Seq tissue_normal CPT0079850005 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L008_R1_001.unaln.bam 259614711 BAM S36_L008_R1 submitted_unaligned CPTAC3 2775e94f-f4d4-4b80-b245-feea6308e58a 034a2afa70a1c551ff484c49f8865101 {"aliquot_tag": "ALQ_d343ea95", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.miRNA-Seq.T.hg38 C3N-00959 LUAD miRNA-Seq tumor CPT0079830006 6a83ae63-0905-4f0a-93bf-7c621fbe54cf_mirnaseq_gdc_realn.bam 244399662 BAM harmonized CPTAC3 ab5c3d99-4b61-45bb-a81f-100b3dc53522 798fc9a7880b54005d9c219ca7ea53fb {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.RNA-Seq.chimeric.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.chimeric.gdc_realn.bam 76478717 BAM chimeric harmonized CPTAC3 d5f722d6-ec77-430f-a091-5d578b7c1ff3 14edf0e16671ce81c109321cf324336c {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.RNA-Seq.chimeric.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.chimeric.gdc_realn.bam 46175931 BAM chimeric harmonized CPTAC3 8b4d0c1a-2549-4e39-9777-1a6052927c46 c0b118040adc7e3a48ab98c675cc9f4a {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.RNA-Seq.genomic.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.genomic.gdc_realn.bam 8129045978 BAM genomic harmonized CPTAC3 745652ec-8a6f-4860-893b-3423e7a9b9d3 da96f1d7e2345ad407e2adcc0205e223 {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.RNA-Seq.genomic.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.genomic.gdc_realn.bam 8431579276 BAM genomic harmonized CPTAC3 2f6d6bf2-26ac-487e-b59b-6e7c55345d1b 9698c7444e58658c217ee816517b6f5b {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.RNA-Seq.S13_L004_R1.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3935302587 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 9b39328d-4e48-4d68-94c6-5c3e83d92a65 736b36f83926751cbbf9db168502370c {"aliquot_tag": "ALQ_c50a4e8f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.RNA-Seq.S13_L004_R2.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4269685926 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 a68b8948-3bf6-4130-a106-6c766696f6c3 712fa2d1a36fe83056f6779a247d0cc3 {"aliquot_tag": "ALQ_c50a4e8f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.RNA-Seq.S78_L008_R1.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R1_001.fastq.gz 4020554061 FASTQ S78_L008_R1 submitted_unaligned CPTAC3 778ac7ff-a6e3-4083-9c0f-8d8b497c56aa eb20668f3adb0af0ce3977b019bda7a7 {"aliquot_tag": "ALQ_d343ea95", "sample": "S78", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.RNA-Seq.S78_L008_R2.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R2_001.fastq.gz 4342676725 FASTQ S78_L008_R2 submitted_unaligned CPTAC3 60953128-c2f1-471f-8b70-216b9446b839 717886200e2bd4719b63238583a4f05c {"aliquot_tag": "ALQ_d343ea95", "sample": "S78", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.RNA-Seq.transcriptome.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.transcriptome.gdc_realn.bam 10335177707 BAM transcriptome harmonized CPTAC3 90b6e280-c8ee-4a9c-932f-35241b1c8713 6c25b5828493ea18e4a3cd6918728258 {"aliquot_tag": "ALQ_d343ea95", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.RNA-Seq.transcriptome.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.transcriptome.gdc_realn.bam 10459278833 BAM transcriptome harmonized CPTAC3 479062e4-85bf-438e-a0bc-0f3601137c93 db56e9882e554c7ab3eec55ddcc42a06 {"aliquot_tag": "ALQ_c50a4e8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.WGS.A C3N-00959 LUAD WGS tissue_normal CPT0079850008 CPT0079850008.WholeGenome.RP-1303.bam 58614808767 BAM submitted_aligned CPTAC3 f73ba9f6-4df2-4e25-aa04-54a036ac167d 0129f25238c17b193f126465c05090cc {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.WGS.A.hg38 C3N-00959 LUAD WGS tissue_normal CPT0079850008 e57ae3c6-fdc3-428f-a274-35a0ae813f7b_wgs_gdc_realn.bam 85457569017 BAM harmonized CPTAC3 670ca876-71b8-42c6-91a6-84bcfd4c86cd b715f2c07a39c52c0f1cb69f2bc61dce {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.WGS.N C3N-00959 LUAD WGS blood_normal CPT0080770002 CPT0080770002.WholeGenome.RP-1303.bam 71773430569 BAM submitted_aligned CPTAC3 74a447ad-cdae-46fe-a68b-4030c6287a91 8f0c8428b8f99499e1b5204e7161f928 {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00959.WGS.N.hg38 C3N-00959 LUAD WGS blood_normal CPT0080770002 8e83ef46-d267-45b7-917e-b9e9e4bdb363_gdc_realn.bam 112542448845 BAM harmonized CPTAC3 86018d06-3354-4a51-8200-591a3071350a f889d8e27639c939663a1734f3d95fcf {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00959.WGS.T C3N-00959 LUAD WGS tumor CPT0079830009 CPT0079830009.WholeGenome.RP-1303.bam 66385803474 BAM submitted_aligned CPTAC3 8f669357-eabc-4116-9448-238400202eef f28fe35020f06a7dc785021e0633a92a {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.WGS.T.hg38 C3N-00959 LUAD WGS tumor CPT0079830009 ab74ba2c-c2fc-4dc1-9d4b-943680f7b486_gdc_realn.bam 100578487992 BAM harmonized CPTAC3 fe620bed-1b17-40d7-87cb-1012d86518b2 0fdd9d5adf1e243fc0b760bbf2cd6e2c {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.WXS.A C3N-00959 LUAD WXS tissue_normal CPT0079850008 CPT0079850008.WholeExome.RP-1303.bam 26490556056 BAM submitted_aligned CPTAC3 8943917d-9d91-419d-8304-1dfb1d51397a 3ea46a3ed99cc83b9d8f13ad0340f4bb {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.WXS.A.hg38 C3N-00959 LUAD WXS tissue_normal CPT0079850008 e57ae3c6-fdc3-428f-a274-35a0ae813f7b_wxs_gdc_realn.bam 36310452650 BAM harmonized CPTAC3 947a7bdb-5a00-47e8-a1f0-79e7d8932a26 2bb0b1b9be5e58bad5befa0983f8047b {"aliquot_tag": "ALQ_adf29628", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-00959.WXS.N C3N-00959 LUAD WXS blood_normal CPT0080770002 CPT0080770002.WholeExome.RP-1303.bam 30892121541 BAM submitted_aligned CPTAC3 dbb316c1-8114-4ca1-8e21-dce82b82effe 7850885a6430ea246e1452f604e9c988 {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00959.WXS.N.hg38 C3N-00959 LUAD WXS blood_normal CPT0080770002 8e83ef46-d267-45b7-917e-b9e9e4bdb363_gdc_realn.bam 42133332087 BAM harmonized CPTAC3 bb389d60-4210-4de4-bfb0-50e66395d661 fc090febec5d56d5519ed8733caceaeb {"aliquot_tag": "ALQ_8a09c9fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-00959.WXS.T C3N-00959 LUAD WXS tumor CPT0079830009 CPT0079830009.WholeExome.RP-1303.bam 22912595307 BAM submitted_aligned CPTAC3 ec261977-471a-4f31-ad62-bad86602e1ff 7d3f9eaea87e7e2d4ffa434a25b67524 {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00959.WXS.T.hg38 C3N-00959 LUAD WXS tumor CPT0079830009 ab74ba2c-c2fc-4dc1-9d4b-943680f7b486_gdc_realn.bam 31562863338 BAM harmonized CPTAC3 a7f53506-333d-46c9-bc5f-9a5d66d1233b 69a66262c9d4f63ca57ed44df2f4f3d9 {"aliquot_tag": "ALQ_55b5531e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.MethArray.Green.T C3N-01003 UCEC Methylation_Array tumor CPT0078610009 202176290046_R06C01_Grn.idat 13676215 IDAT Green NA CPTAC3 fd6b15e7-ba66-45e8-b6e2-7fda69b69531 f11b46ea0fa463bd67268a5d06b3bbf5 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.MethArray.Red.T C3N-01003 UCEC Methylation_Array tumor CPT0078610009 202176290046_R06C01_Red.idat 13676215 IDAT Red NA CPTAC3 26617b88-8f34-4ee8-bdaa-049e67e9f09e db668818a1f9c5e58ceabf2a99d834a0 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.miRNA-Seq.A.hg38 C3N-01003 UCEC miRNA-Seq tissue_normal CPT0078620004 ee6a2ad1-f9c7-416d-880f-35a429392984_mirnaseq_gdc_realn.bam 283844427 BAM harmonized CPTAC3 18bea84e-c27b-4b64-9fd1-2bc4dd7db636 c9b53f5052a9240f3209de091962b85a {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01003.miRNA-Seq.S14_L008_R1.T C3N-01003 UCEC miRNA-Seq tumor CPT0078610006 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L008_R1_001.unaln.bam 251967311 BAM S14_L008_R1 submitted_unaligned CPTAC3 cc065977-6a98-443c-b43c-5f1779a892a0 40570b7d3cc3e9f570f8d9f56c698d08 {"aliquot_tag": "ALQ_23b7772b", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.miRNA-Seq.S8_L005_R1.A C3N-01003 UCEC miRNA-Seq tissue_normal CPT0078620004 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L005_R1_001.unaln.bam 241823904 BAM S8_L005_R1 submitted_unaligned CPTAC3 c01a88a0-381b-459c-993f-cf5085b0124d 6220ce6b33a3c12726a3be9ca0bdea2f {"aliquot_tag": "ALQ_8a196cd7", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01003.miRNA-Seq.T.hg38 C3N-01003 UCEC miRNA-Seq tumor CPT0078610006 1003e681-643b-42c5-85e3-c152b7b4115a_mirnaseq_gdc_realn.bam 282386712 BAM harmonized CPTAC3 3f93a39a-ee7b-4195-9a23-d4550627dab7 78c829f4136cdb0327999756b64d7589 {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.chimeric.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.chimeric.gdc_realn.bam 96849608 BAM chimeric harmonized CPTAC3 5e9c9a05-ae1b-4cf4-ad55-ce2daf99bb3c 9094e9516c459b9d21aea901da545484 {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01003.RNA-Seq.chimeric.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.chimeric.gdc_realn.bam 121238198 BAM chimeric harmonized CPTAC3 c656d5e5-9276-4933-b4b0-22776d88652f b62160873c6c1cf3ce83771074e6c98e {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.chimeric.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.chimeric.gdc_realn.bam 57491008 BAM chimeric harmonized CPTAC3 54c45ff5-387d-446e-8596-92741cd90f85 57217ce373ab7f10b394529f70e36c1d {"aliquot_tag": "ALQ_40de0387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.genomic.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.genomic.gdc_realn.bam 7381551183 BAM genomic harmonized CPTAC3 63a75053-034c-4a79-9865-648f89a7ee6a 361103a3d28d2e7e671f324b6ad6250f {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01003.RNA-Seq.genomic.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.genomic.gdc_realn.bam 6915711491 BAM genomic harmonized CPTAC3 cd781f89-87e4-4c00-9138-137423e2730e acd9f746ff467196f70b6759d725f677 {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.genomic.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.genomic.gdc_realn.bam 12251629381 BAM genomic harmonized CPTAC3 a387b6a1-c4f3-4587-b786-31c738c1af6f c164e11b30dde31223d6ff880d743c9c {"aliquot_tag": "ALQ_40de0387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.S13_L004_R1.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R1_001.fastq.gz 3602842705 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 ca8d953d-a91b-4337-a7d3-29a4413e9e52 1416d451b065c70d112ace29633aebc9 {"aliquot_tag": "ALQ_8a196cd7", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01003.RNA-Seq.S13_L004_R2.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R2_001.fastq.gz 3840913134 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 ceb30669-cc87-4cb6-a827-f6416abbe816 33b2779abab41ccd821a91ff89f8dedb {"aliquot_tag": "ALQ_8a196cd7", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01003.RNA-Seq.S14_L006_R1.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R1_001.fastq.gz 3467987800 FASTQ S14_L006_R1 submitted_unaligned CPTAC3 4313d974-189f-4e5e-93c5-87adb840c560 6202996fb10ffcdea41b7e4bb33e36d1 {"aliquot_tag": "ALQ_23b7772b", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.S14_L006_R2.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R2_001.fastq.gz 3743365626 FASTQ S14_L006_R2 submitted_unaligned CPTAC3 a613938d-aa43-4c67-ba0c-78c1c6c69a7b 4eba383edf03b5d51c053b01d48f4e4a {"aliquot_tag": "ALQ_23b7772b", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.S30_R1.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R1_001.fastq.gz 4418984733 FASTQ S30_R1 submitted_unaligned CPTAC3 27741501-da36-4b81-b561-7fc5b1bbf24e 5023c4e92ed6746f055e6b145710f736 {"aliquot_tag": "ALQ_40de0387", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.S30_R2.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R2_001.fastq.gz 4265163977 FASTQ S30_R2 submitted_unaligned CPTAC3 471c0b24-4e9b-4182-9231-364f3b6b7735 3615416939874ae9ac0f979a5df3774b {"aliquot_tag": "ALQ_40de0387", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.transcriptome.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.transcriptome.gdc_realn.bam 9527237551 BAM transcriptome harmonized CPTAC3 85c4a0cd-fef5-4584-8324-f2df90652812 43870b5b5953f9e9da934a1b757f7c2a {"aliquot_tag": "ALQ_8a196cd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01003.RNA-Seq.transcriptome.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.transcriptome.gdc_realn.bam 8998170252 BAM transcriptome harmonized CPTAC3 0129a82b-c1d7-4a97-a03a-044f4a8ddf29 c25d16539ef96991927431794dccb7ab {"aliquot_tag": "ALQ_23b7772b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.RNA-Seq.transcriptome.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.transcriptome.gdc_realn.bam 3798284631 BAM transcriptome harmonized CPTAC3 3e70b210-a731-4ade-8e35-e3cb4e20d3fc d9fb1725faefa0abf04367aef20182e4 {"aliquot_tag": "ALQ_40de0387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.WGS.N C3N-01003 UCEC WGS blood_normal CPT0078650002 CPT0078650002.WholeGenome.RP-1303.bam 68636357638 BAM submitted_aligned CPTAC3 4444ea52-1e5e-4025-a723-85140f57ef6b 9d680ef777c9133cc77650c01cb1820d {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01003.WGS.N.hg38 C3N-01003 UCEC WGS blood_normal CPT0078650002 51eb5a05-ad42-43dc-90a4-3ff7bb659a08_gdc_realn.bam 99991837066 BAM harmonized CPTAC3 f7ee25ab-e8b9-411d-8a85-30a3e162ce4b 9011627c85cb35dce9c861f5c944f40c {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01003.WGS.T C3N-01003 UCEC WGS tumor CPT0078610009 CPT0078610009.WholeGenome.RP-1303.bam 73701235841 BAM submitted_aligned CPTAC3 b8d5e911-7a70-4e50-8511-70fbcafddcca 23d4a494d5c69be327b80bd46d79e3c3 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.WGS.T.hg38 C3N-01003 UCEC WGS tumor CPT0078610009 b3f94939-b025-462f-8fff-ecbcd2a7d970_gdc_realn.bam 110019715494 BAM harmonized CPTAC3 c3c5f8e3-f323-4657-baab-5a0af7cbc471 459d488f7362b100eed7b419554d17e1 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.WXS.N C3N-01003 UCEC WXS blood_normal CPT0078650002 CPT0078650002.WholeExome.RP-1303.bam 28330800009 BAM submitted_aligned CPTAC3 a78df87f-09cf-4552-b3a9-f9509699548e bc9eda7dc2aa88373892008d6467dded {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01003.WXS.N.hg38 C3N-01003 UCEC WXS blood_normal CPT0078650002 51eb5a05-ad42-43dc-90a4-3ff7bb659a08_gdc_realn.bam 38444058873 BAM harmonized CPTAC3 a434ccce-59e9-494a-9621-9cc732068f76 7b2c56a725887a493ac7ba15a945c1e2 {"aliquot_tag": "ALQ_d15a15f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01003.WXS.T C3N-01003 UCEC WXS tumor CPT0078610009 CPT0078610009.WholeExome.RP-1303.bam 31880449889 BAM submitted_aligned CPTAC3 a2ec9e6c-7905-4651-8f2f-dba4b20e994c 2aa68b2979fb38f7ba86ea38f2c8baf5 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01003.WXS.T.hg38 C3N-01003 UCEC WXS tumor CPT0078610009 b3f94939-b025-462f-8fff-ecbcd2a7d970_gdc_realn.bam 43266049368 BAM harmonized CPTAC3 6e7973fa-f4a2-4c62-993e-444a64f54479 40b1107146eb85079f271c1302901787 {"aliquot_tag": "ALQ_b3086aba", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01007.MethArray.Green.T C3N-01007 UCEC Methylation_Array tumor CPT0095100009 202234370120_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8b42c6c3-47da-43f9-b487-73e4f7c7a659 b64f4dd55f6f77a8659c780895878e50 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.MethArray.Red.T C3N-01007 UCEC Methylation_Array tumor CPT0095100009 202234370120_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 af7edba4-a313-451e-be26-932fb3d4831b d8b8a04dd14bd33bb944bbdff23a08b4 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.miRNA-Seq.S38_L007_R1.T C3N-01007 UCEC miRNA-Seq tumor CPT0095100006 180828_UNC32-K00270_0112_AHWTLNBBXX_CACTCA_S38_L007_R1_001.unaln.bam 179324984 BAM S38_L007_R1 submitted_unaligned CPTAC3 f53acacb-2056-4c2a-af6f-3675a2206dea c8644e8e18e3f6ce481aa6771d111263 {"aliquot_tag": "ALQ_778f1dd1", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.miRNA-Seq.T.hg38 C3N-01007 UCEC miRNA-Seq tumor CPT0095100006 9619725d-e2d8-45cf-80e7-53d5424c74d6_mirnaseq_gdc_realn.bam 204587615 BAM harmonized CPTAC3 86ff480e-16a1-4759-acd0-48a630dce3ab ad526d82129451faadc6ca01dd208080 {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.RNA-Seq.chimeric.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.chimeric.gdc_realn.bam 50499893 BAM chimeric harmonized CPTAC3 3b0c63b1-eb2b-4e46-9524-97b104c0c99f 6264d64c91abc0399c1a7c4e3d841ed2 {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.RNA-Seq.genomic.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.genomic.gdc_realn.bam 8427897247 BAM genomic harmonized CPTAC3 217625ec-949a-43ba-911d-fecd7277bbd3 3de59a37de83abfc2b21aa72f5f232ae {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.RNA-Seq.S11_L003_R1.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R1_001.fastq.gz 3999784745 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 e055453b-7826-4eae-a073-08d8e49220a7 e04a8106a0f914ec9bf4a8ebd7c1cc20 {"aliquot_tag": "ALQ_778f1dd1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.RNA-Seq.S11_L003_R2.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R2_001.fastq.gz 4334268791 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 98aa1cc5-591d-43c4-9b91-0d395c802611 cecaf8b722e92d241ab567557244f634 {"aliquot_tag": "ALQ_778f1dd1", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.RNA-Seq.transcriptome.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.transcriptome.gdc_realn.bam 9686210202 BAM transcriptome harmonized CPTAC3 b69c8da5-e3e6-4973-a62b-37067501d72d 55c4a33caaeaa73e2740c27b1d40bd51 {"aliquot_tag": "ALQ_778f1dd1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.WGS.N C3N-01007 UCEC WGS blood_normal CPT0095120002 CPT0095120002.WholeGenome.RP-1303.bam 58360735935 BAM submitted_aligned CPTAC3 a8964b27-a4cf-455a-b287-4e96863cd247 e24827d9319dffd5da7567646fdc1ff9 {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01007.WGS.N.hg38 C3N-01007 UCEC WGS blood_normal CPT0095120002 5a790ee0-6b08-46bf-9caa-8e1fffea7565_wgs_gdc_realn.bam 86050153894 BAM harmonized CPTAC3 ec2f5ff4-8c4b-4612-8f8e-6e021b101ac0 7d888490d0863681e9c6e18dadfd9b67 {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01007.WGS.T C3N-01007 UCEC WGS tumor CPT0095100009 CPT0095100009.WholeGenome.RP-1303.bam 70186602687 BAM submitted_aligned CPTAC3 02f55ad4-1d37-4631-97f8-7d96d6d5c53a 6087311ef488a098840a119375c791b2 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.WGS.T.hg38 C3N-01007 UCEC WGS tumor CPT0095100009 5fb662f0-ae29-4bc2-b7db-0f272bf9b009_wgs_gdc_realn.bam 104176978478 BAM harmonized CPTAC3 76932fec-1429-4deb-bf5b-06c7ee943526 6de39a8f469714f019fbff1c646d20e3 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.WXS.N C3N-01007 UCEC WXS blood_normal CPT0095120002 CPT0095120002.WholeExome.RP-1303.bam 31644039447 BAM submitted_aligned CPTAC3 ad085034-4aa6-466b-8486-aea052e36684 322930a91fdfea04884ff29bce7da518 {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01007.WXS.N.hg38 C3N-01007 UCEC WXS blood_normal CPT0095120002 5a790ee0-6b08-46bf-9caa-8e1fffea7565_wxs_gdc_realn.bam 42054718510 BAM harmonized CPTAC3 cc642a8b-b3dc-43f6-827a-b2bd741be052 8fac648bb3d89155440aa74d76c7a29e {"aliquot_tag": "ALQ_a228aa8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01007.WXS.T C3N-01007 UCEC WXS tumor CPT0095100009 CPT0095100009.WholeExome.RP-1303.bam 42039831016 BAM submitted_aligned CPTAC3 c7bbcc2a-4f2b-4832-bd8d-127426c52fc0 00e7ee8124771f839e05409ae89fed52 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01007.WXS.T.hg38 C3N-01007 UCEC WXS tumor CPT0095100009 5fb662f0-ae29-4bc2-b7db-0f272bf9b009_wxs_gdc_realn.bam 58394631653 BAM harmonized CPTAC3 e0ccd503-b6cc-4aa3-b255-77afdd6ec42f f086abf2fb2fc8761ace0a5d0dd98ca4 {"aliquot_tag": "ALQ_e7300040", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.MethArray.Green.T C3N-01008 UCEC Methylation_Array tumor CPT0095130010 202234380062_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 106f3b4a-7391-45c5-aed9-7b072854afa3 46d1620c104f8d8c926b6e2135e8d087 {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.MethArray.Red.T C3N-01008 UCEC Methylation_Array tumor CPT0095130010 202234380062_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 272c31ec-1696-4f97-8528-f2c17abe9454 72f94d91f355a05038849404064ed08f {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.miRNA-Seq.S39_L007_R1.T C3N-01008 UCEC miRNA-Seq tumor CPT0095130007 180828_UNC32-K00270_0112_AHWTLNBBXX_CAGGCG_S39_L007_R1_001.unaln.bam 220680255 BAM S39_L007_R1 submitted_unaligned CPTAC3 aabdf7fe-efa6-4bac-9594-8205797869a6 e0cb76c3b205a89179169c7261052adc {"aliquot_tag": "ALQ_47285797", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.miRNA-Seq.T.hg38 C3N-01008 UCEC miRNA-Seq tumor CPT0095130007 cde24901-60f6-4e4b-a836-a118c656926d_mirnaseq_gdc_realn.bam 243500831 BAM harmonized CPTAC3 0a0f5af0-a3d7-4331-b276-c8a58fcd0098 b5ed5a993995dd22bae91d0763ac75eb {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.RNA-Seq.chimeric.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.chimeric.gdc_realn.bam 35989663 BAM chimeric harmonized CPTAC3 7ad3a2bc-d81a-4cec-a3b2-e1fa04437773 8c4582b1807e95aa188e1695d09f32f1 {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.RNA-Seq.genomic.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.genomic.gdc_realn.bam 8117689364 BAM genomic harmonized CPTAC3 e1c4c621-897e-4038-b667-3b2779e722db 180e776702389f37f4c33cdf828eaaa3 {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.RNA-Seq.S5_L002_R1.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3884231388 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 746a2984-4434-48b2-bdcb-302434f58f19 9142b1b9073a76e4709ae13ced14adad {"aliquot_tag": "ALQ_47285797", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.RNA-Seq.S5_L002_R2.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4179043586 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 bd9117e2-c12d-47ac-a9de-642d5a4a3cee 33166e1db3b09ef1e6b693f5f2b312ca {"aliquot_tag": "ALQ_47285797", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.RNA-Seq.transcriptome.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.transcriptome.gdc_realn.bam 9772276931 BAM transcriptome harmonized CPTAC3 4397e6e2-a8b5-43b2-87bf-7ac00a29ba60 416d6575d02fa71815bad5a09d726574 {"aliquot_tag": "ALQ_47285797", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.WGS.N C3N-01008 UCEC WGS blood_normal CPT0095170002 CPT0095170002.WholeGenome.RP-1303.bam 61040399034 BAM submitted_aligned CPTAC3 40efee03-fadb-4297-8252-822cc28097f1 46b88c645176dc5763837eb458235ae3 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01008.WGS.N.hg38 C3N-01008 UCEC WGS blood_normal CPT0095170002 1d7d2cc5-25d7-46c6-b6e4-ca8ed3295ff7_wgs_gdc_realn.bam 89163757990 BAM harmonized CPTAC3 3ca33205-c8b6-4ca4-9b6c-a98e1457d478 8326e41164b81bb51a9c9bac03078af9 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01008.WGS.T C3N-01008 UCEC WGS tumor CPT0095130010 CPT0095130010.WholeGenome.RP-1303.bam 70514562709 BAM submitted_aligned CPTAC3 a847efed-3716-45af-b52e-262fd4287b34 ee35982a69d18ae61d3e03242e0f429e {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.WGS.T.hg38 C3N-01008 UCEC WGS tumor CPT0095130010 1aaaa528-ab8c-4086-ab81-eca0ffd953ff_wgs_gdc_realn.bam 101958458872 BAM harmonized CPTAC3 6d177b27-0539-455c-b9fd-9a766d33f817 75b2fe80687df1202c9dab88da7d6d59 {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.WXS.N C3N-01008 UCEC WXS blood_normal CPT0095170002 CPT0095170002.WholeExome.RP-1303.bam 26101524705 BAM submitted_aligned CPTAC3 c2c78ee5-55f4-4b0d-b79d-bd177f8d4c18 e5f24e6548d4541670f9a83555833853 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01008.WXS.N.hg38 C3N-01008 UCEC WXS blood_normal CPT0095170002 1d7d2cc5-25d7-46c6-b6e4-ca8ed3295ff7_wxs_gdc_realn.bam 35329610710 BAM harmonized CPTAC3 310b5afd-b1f7-4cb4-aaa2-5e2575356a6a 9aea2d51ea259e1d5a6ccc3fd206b1f6 {"aliquot_tag": "ALQ_c2c205d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01008.WXS.T C3N-01008 UCEC WXS tumor CPT0095130010 CPT0095130010.WholeExome.RP-1303.bam 35618083962 BAM submitted_aligned CPTAC3 60e65a63-6785-430c-b045-6be004b01291 f1d741f35391f21ae0de79fd587cd904 {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01008.WXS.T.hg38 C3N-01008 UCEC WXS tumor CPT0095130010 1aaaa528-ab8c-4086-ab81-eca0ffd953ff_wxs_gdc_realn.bam 48358497488 BAM harmonized CPTAC3 4cda9956-53f0-40ac-b3eb-93a1f16484dc 5874e29cb5bf0f907669264c6e7b907a {"aliquot_tag": "ALQ_c057f375", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01011.MethArray.Green.A C3N-01011 PDA Methylation_Array tissue_normal CPT0066020006 203561620080_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 93fbbe29-3062-49fc-8b97-7edb85c4f0a7 31dd84eb1b8ec0f40190b06a720321d1 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.MethArray.Green.T C3N-01011 PDA Methylation_Array tumor CPT0065640009 202184990052_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 17e304a5-9efe-41e2-9fd6-2eed68a67b69 95a0490003d3a1b4fadc0e1da6995585 {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.MethArray.Red.A C3N-01011 PDA Methylation_Array tissue_normal CPT0066020006 203561620080_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 1ee1a9d2-538e-4422-a293-5bde60315309 06392f4a248a8818bf7957b0ff3bd43f {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.MethArray.Red.T C3N-01011 PDA Methylation_Array tumor CPT0065640009 202184990052_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 8f942763-8d7d-4268-8620-b0bc19f4a8ce d78fda697cda7510ff4de81307d5125e {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.miRNA-Seq.A.hg38 C3N-01011 PDA miRNA-Seq tissue_normal CPT0066020009 36e2381a-dba9-4b24-bb5d-ddbec6e2ec74_mirnaseq_gdc_realn.bam 227916943 BAM harmonized CPTAC3 79dd313f-12b3-4b81-b6dd-b727522ace6c d1879946272985c1222c78a9e585baa8 {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.miRNA-Seq.S13_L001_R1.T C3N-01011 PDA miRNA-Seq tumor CPT0065640006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 249392694 BAM S13_L001_R1 submitted_unaligned CPTAC3 44614a05-4ddc-40b5-9c0a-0682ed73c910 5ae065da0686cb93557989480733e4b7 {"aliquot_tag": "ALQ_462a9905", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.miRNA-Seq.S25_L002_R1.A C3N-01011 PDA miRNA-Seq tissue_normal CPT0066020009 181119_UNC31-K00269_0165_AH27WCBBXY_ATCACG_S25_L002_R1_001.unaln.bam 204389111 BAM S25_L002_R1 submitted_unaligned CPTAC3 5b16dc71-3d94-4704-9bb3-a95d60a7842e 757e9774c1bc0caae51f2a759af386d3 {"aliquot_tag": "ALQ_be6488b4", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.miRNA-Seq.T.hg38 C3N-01011 PDA miRNA-Seq tumor CPT0065640006 bedc811b-a574-4ac6-9264-9900bf4fea4d_mirnaseq_gdc_realn.bam 275660657 BAM harmonized CPTAC3 770101a2-bad8-4a22-b5d1-ec0a37b3b6dc c92c0a76b7206fd0d53d75df0459b59e {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.RNA-Seq.chimeric.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.chimeric.gdc_realn.bam 35711589 BAM chimeric harmonized CPTAC3 40694274-6a7f-4c1f-ad23-32a66c3595f7 4739b6dc060923a8b0696db657ba202f {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.RNA-Seq.chimeric.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.chimeric.gdc_realn.bam 27652274 BAM chimeric harmonized CPTAC3 0e450fc3-00db-4f50-9485-9767deab4c0c 9ba6060b479ea76272c4f99b00310067 {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.RNA-Seq.genomic.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.genomic.gdc_realn.bam 9594141525 BAM genomic harmonized CPTAC3 cb97183f-987e-4285-9917-f7a27b3242a4 d66ff41b68e6075614a91c3c0a686b81 {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.RNA-Seq.genomic.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.genomic.gdc_realn.bam 9306443487 BAM genomic harmonized CPTAC3 9b32e657-29df-4b8b-b7a6-fd86087522c2 e4541f92ac41dbb6d73a0226a9756210 {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.RNA-Seq.S13_L004_R1.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4357361033 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 f647f91a-14f2-4b99-b4d7-13a9ec2c2b77 22825c1f1da5265ece7b5ea992565394 {"aliquot_tag": "ALQ_462a9905", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.RNA-Seq.S13_L004_R2.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4713123370 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 21e97bfd-6735-4b9e-8a15-5012a3699da4 551a61e9ca9f415192006629833fdd0b {"aliquot_tag": "ALQ_462a9905", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.RNA-Seq.S9_L003_R1.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3961400843 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 14df59ba-a33c-4c06-a797-f354f8f5a49d 52e7d3db167fac9507eb13691e975bde {"aliquot_tag": "ALQ_be6488b4", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.RNA-Seq.S9_L003_R2.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R2_001.fastq.gz 4042640158 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 a55dd87b-078c-4637-8554-87d1fe3d3b0c 17ed2864dcfbc27cf04990d00954ded2 {"aliquot_tag": "ALQ_be6488b4", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.RNA-Seq.transcriptome.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.transcriptome.gdc_realn.bam 10740772385 BAM transcriptome harmonized CPTAC3 4bf8958c-0c10-4cb0-955f-29c5dd5eaff9 7a79ce3a974f3b2a8d4fe51ddc93029e {"aliquot_tag": "ALQ_be6488b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.RNA-Seq.transcriptome.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.transcriptome.gdc_realn.bam 11754964739 BAM transcriptome harmonized CPTAC3 2dfcfe24-81d4-4866-8cb5-659282958319 61f2adb6778c898ceb69101ecafa90fd {"aliquot_tag": "ALQ_462a9905", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WGS.A C3N-01011 PDA WGS tissue_normal CPT0066020006 CPT0066020006.WholeGenome.RP-1303.bam 70576796472 BAM submitted_aligned CPTAC3 f8a7ec51-c9b3-415d-a3e7-5390d373ae21 bce33782a6d87f5607f547dec89a1a18 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.WGS.A.hg38 C3N-01011 PDA WGS tissue_normal CPT0066020006 ed02f52d-4ce5-48da-ac91-c3accf3056f6_wgs_gdc_realn.bam 102361051125 BAM harmonized CPTAC3 178f18f8-7cd3-434b-b7c9-b0ac5b3d4acd bc78d06685ca214fa56b10497fc56bc4 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.WGS.N C3N-01011 PDA WGS blood_normal CPT0070720002 CPT0070720002.WholeGenome.RP-1303.bam 64796199183 BAM submitted_aligned CPTAC3 a51972b0-4958-41b2-a19d-46bb035666f9 633515d4869084481919c7267ab8c24f {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01011.WGS.N.hg38 C3N-01011 PDA WGS blood_normal CPT0070720002 2fe6535b-e5dc-47a4-a646-7b014053a3aa_gdc_realn.bam 95917828941 BAM harmonized CPTAC3 a2cc0f67-d0a1-40f9-a57c-049e3c3cbab5 05ced8d05e7bddf09f44e14a86d33013 {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01011.WGS.T C3N-01011 PDA WGS tumor CPT0065640009_1 CPT0065640009_1.WholeGenome.RP-1303.bam 116816749796 BAM submitted_aligned CPTAC3 b92652f6-3755-48fe-acd8-9dc9aac5b99f e15c5dcf4f9e406746c18b3fd956294e {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WGS.T C3N-01011 PDA WGS tumor CPT0065640009 CPT0065640009.WholeGenome.RP-1303.bam 58576376681 BAM submitted_aligned CPTAC3 7eafbb01-d6c0-421d-b1e7-143ef11f6a7d e7261dda7feb564c173c642029769aae {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WGS.T.hg38 C3N-01011 PDA WGS tumor CPT0065640009_1 1c06e887-12a2-4aa6-9ac8-6daee0f8d626_wgs_gdc_realn.bam 172473316950 BAM harmonized CPTAC3 466d0c80-829a-4d2a-921e-c320dfc8dba1 49193ce12cedafd3fabc480f87c6b84e {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WGS.T.hg38 C3N-01011 PDA WGS tumor CPT0065640009 331f1cd5-0c8d-4594-9f92-2364cb839192_gdc_realn.bam 87941309146 BAM harmonized CPTAC3 d3ddbf95-e606-45a5-a37c-628beda589ca 28d96ef3054e3853c4aec69999e6f53d {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WXS.A C3N-01011 PDA WXS tissue_normal CPT0066020006 CPT0066020006.WholeExome.RP-1303.bam 46210556112 BAM submitted_aligned CPTAC3 207307a9-1e29-4dbb-ac97-17c088b538e3 c3347acdca4d47502ab83f3c2d147687 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.WXS.A.hg38 C3N-01011 PDA WXS tissue_normal CPT0066020006 ed02f52d-4ce5-48da-ac91-c3accf3056f6_wxs_gdc_realn.bam 62349830085 BAM harmonized CPTAC3 bcfc8152-a698-479b-b03c-4ded84bf1eca cf3cc6f7c17f9a3ec641b01b094fbc68 {"aliquot_tag": "ALQ_2edb9525", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01011.WXS.N C3N-01011 PDA WXS blood_normal CPT0070720002 CPT0070720002.WholeExome.RP-1303.bam 37544226586 BAM submitted_aligned CPTAC3 ac5513cb-51c7-40ff-bf88-3c456b84b342 9654df03ea3cd28f9323868beb0ef8c5 {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01011.WXS.N.hg38 C3N-01011 PDA WXS blood_normal CPT0070720002 2fe6535b-e5dc-47a4-a646-7b014053a3aa_gdc_realn.bam 52577762428 BAM harmonized CPTAC3 d2e3c88a-df8b-4d9c-8c39-bb86017f077e 2e949c870646be389d9a3aeccc115d20 {"aliquot_tag": "ALQ_9bc95420", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01011.WXS.T C3N-01011 PDA WXS tumor CPT0065640009_1 CPT0065640009_1.WholeExome.RP-1303.bam 50096236426 BAM submitted_aligned CPTAC3 5cb8a429-86ca-4193-a3d0-db916278a229 d1baaf03cdecfdeb4f8f743e7a6ee6b6 {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WXS.T C3N-01011 PDA WXS tumor CPT0065640009 CPT0065640009.WholeExome.RP-1303.bam 29462491515 BAM submitted_aligned CPTAC3 cdf09597-4161-4dfb-84fe-99da88f9427d e88df3e0cf86eaedab07cdf5891e10c9 {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WXS.T.hg38 C3N-01011 PDA WXS tumor CPT0065640009_1 1c06e887-12a2-4aa6-9ac8-6daee0f8d626_wxs_gdc_realn.bam 68513067980 BAM harmonized CPTAC3 0171d6cd-6e09-4a21-b80f-16d6945a1305 a7b9238f13ca8bf5e874c8f34bdbabb3 {"aliquot_tag": "ALQ_d2dc8dec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01011.WXS.T.hg38 C3N-01011 PDA WXS tumor CPT0065640009 331f1cd5-0c8d-4594-9f92-2364cb839192_gdc_realn.bam 40653692486 BAM harmonized CPTAC3 be4da4d1-50e3-47e5-a725-e70048c71d7e 625a55d188745e69673fcf2ee832057c {"aliquot_tag": "ALQ_d6958494", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.MethArray.Green.T C3N-01012 PDA Methylation_Array tumor CPT0241320008 203561450041_R01C01_Grn.idat 13676218 IDAT Green NA CPTAC3 842d9fda-2831-46b3-9416-4ed6b476f11a c2ad5af8447adc29f0eb543c1cfc4d5d {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.MethArray.Red.T C3N-01012 PDA Methylation_Array tumor CPT0241320008 203561450041_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 5a2ad8d9-84d6-4d38-8104-d7918b4ec198 abd24dccc6c128a2db3c7d8ad7eb83ea {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.miRNA-Seq.S31_L005_R1.T C3N-01012 PDA miRNA-Seq tumor CPT0241320011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTTGA_S31_L005_R1_001.unaln.bam 258753704 BAM S31_L005_R1 submitted_unaligned CPTAC3 a3afdd3f-66fd-4520-9cb2-e6778037e6ed df7267ddde86c286034b374088f3841e {"aliquot_tag": "ALQ_8644521c", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.miRNA-Seq.T.hg38 C3N-01012 PDA miRNA-Seq tumor CPT0241320011 e14fe70b-915e-44c0-9868-58a2e5e8e3ae_mirnaseq_gdc_realn.bam 290357937 BAM harmonized CPTAC3 ba62fa7d-d00b-446b-b9c4-ab3effd37e53 a68072e0a2684e5943df1981cea2b41d {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.RNA-Seq.chimeric.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.chimeric.gdc_realn.bam 51171831 BAM chimeric harmonized CPTAC3 7f2f633c-9d55-4b86-ba95-1f495e5a43a2 6f9eb6bc2f9f1c39332c39c8a7dc3ff7 {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.RNA-Seq.genomic.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.genomic.gdc_realn.bam 11980051529 BAM genomic harmonized CPTAC3 5c0f9ae8-2c35-41b3-a471-98b90bdeab91 68c64beea3768dfd5c19ac1faaa5be5f {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.RNA-Seq.S29_L008_R1.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R1_001.fastq.gz 5425874563 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 8377ab7e-9378-426f-b897-316df8584239 896247f9bd11f052471c4ceb7d9ff077 {"aliquot_tag": "ALQ_8644521c", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.RNA-Seq.S29_L008_R2.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R2_001.fastq.gz 6204358818 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 d33aabf6-72e4-4c00-ad25-3d3cfd351f5a becf39f19ea61276b70743e47c80b855 {"aliquot_tag": "ALQ_8644521c", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.RNA-Seq.transcriptome.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.transcriptome.gdc_realn.bam 16933378838 BAM transcriptome harmonized CPTAC3 4fce4632-2117-45da-99c9-38f6143e4a82 1948f5110cc28c29b22069167ee286a1 {"aliquot_tag": "ALQ_8644521c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.WGS.N C3N-01012 PDA WGS blood_normal CPT0241740002 CPT0241740002.WholeGenome.RP-1303.bam 65390125292 BAM submitted_aligned CPTAC3 cf18d82a-e47e-4640-b3f0-dd1dd018aa2c 13a450e63cd8598bd73d67139c60d5a7 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01012.WGS.N.hg38 C3N-01012 PDA WGS blood_normal CPT0241740002 999b4985-3f54-41a7-bdd3-8ecf55ba1669_wgs_gdc_realn.bam 95659226700 BAM harmonized CPTAC3 d9f91e6e-0290-4048-8901-a7d91e4ef3ff 6d4dc79ee40ab9468ae491fb751b72a3 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01012.WGS.T C3N-01012 PDA WGS tumor CPT0241320008 CPT0241320008.WholeGenome.RP-1303.bam 120310035246 BAM submitted_aligned CPTAC3 bea3b03c-edcf-4a22-8473-6a7eda87d3be 152c1e20b8b9cd1104c9b53f4ea9a711 {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.WGS.T.hg38 C3N-01012 PDA WGS tumor CPT0241320008 ecb04ff6-c2a9-4dd2-a7ad-4003f7602332_wgs_gdc_realn.bam 173619873780 BAM harmonized CPTAC3 a5d5903c-9d1d-4c40-bb27-aa558d4607af b63fa3337d7b353f23d49a8b6fa48ba7 {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.WXS.N C3N-01012 PDA WXS blood_normal CPT0241740002 CPT0241740002.WholeExome.RP-1303.bam 23858563472 BAM submitted_aligned CPTAC3 af0dba07-6d44-4ded-b280-1d6e1b692012 384d2e145875d1c38282e4771abc8832 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01012.WXS.N.hg38 C3N-01012 PDA WXS blood_normal CPT0241740002 999b4985-3f54-41a7-bdd3-8ecf55ba1669_wxs_gdc_realn.bam 32940988027 BAM harmonized CPTAC3 9fc21853-b8f0-49d6-a14d-7efc2e5a08a2 5a1ee04196b2f6f05bde7646188d0468 {"aliquot_tag": "ALQ_12878551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01012.WXS.T C3N-01012 PDA WXS tumor CPT0241320008 CPT0241320008.WholeExome.RP-1303.bam 53825788766 BAM submitted_aligned CPTAC3 94722cf8-3799-4575-badf-fffa63295b4b fa770dba428064089deff358a2f3e23d {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01012.WXS.T.hg38 C3N-01012 PDA WXS tumor CPT0241320008 ecb04ff6-c2a9-4dd2-a7ad-4003f7602332_wxs_gdc_realn.bam 73603199842 BAM harmonized CPTAC3 b06b0ca4-9d1a-427e-88e9-5c2b39c8e300 991421b9b4bdead0647b9e82d8371f7b {"aliquot_tag": "ALQ_e683dbf9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.MethArray.Green.A C3N-01016 LUAD Methylation_Array tissue_normal CPT0083810009 203027390105_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9526aa43-7c65-4573-8702-885bdbe8f8b9 3a19169ad2bfdca92201f99e10f6182e {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.MethArray.Green.T C3N-01016 LUAD Methylation_Array tumor CPT0083780006 202184990066_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8242bdf2-6bc8-4935-8cbd-ff6a2d5fbc31 499dde59483df37ffbd50445685ea60b {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.MethArray.Red.A C3N-01016 LUAD Methylation_Array tissue_normal CPT0083810009 203027390105_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 00d1d979-6a24-466b-a676-c73993da3fa3 5f7397b48c31379d7368072f6a156cf2 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.MethArray.Red.T C3N-01016 LUAD Methylation_Array tumor CPT0083780006 202184990066_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 fdf161b1-4f66-4a6d-88bb-89d5011f9533 e72d8f3115b2e65f7bb4058577ec451d {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.miRNA-Seq.A.hg38 C3N-01016 LUAD miRNA-Seq tissue_normal CPT0083810006 8c93b6e8-8c7d-458e-aaf2-8faf9b00e9f7_mirnaseq_gdc_realn.bam 234752895 BAM harmonized CPTAC3 ae15538f-3a23-4eb5-aa18-85d25aac2671 2163e9ba80d4608c34c47df65751b202 {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.miRNA-Seq.S6_L006_R1.T C3N-01016 LUAD miRNA-Seq tumor CPT0083780009 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L006_R1_001.unaln.bam 166735210 BAM S6_L006_R1 submitted_unaligned CPTAC3 b25fa510-4b12-44c1-82e1-4503d05da958 e51f63bb481bb1ae05005361cea1a713 {"aliquot_tag": "ALQ_ae639d38", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.miRNA-Seq.S8_L007_R1.A C3N-01016 LUAD miRNA-Seq tissue_normal CPT0083810006 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L007_R1_001.unaln.bam 215571741 BAM S8_L007_R1 submitted_unaligned CPTAC3 19b27bf8-286f-4def-a795-560e9b5cca8c 48107f5c4c5b63fc2aae6cc69a2c5c55 {"aliquot_tag": "ALQ_c29a500d", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.miRNA-Seq.T.hg38 C3N-01016 LUAD miRNA-Seq tumor CPT0083780009 a7e3a6fa-4202-4fe0-bde0-3b985f6dbab0_mirnaseq_gdc_realn.bam 182739238 BAM harmonized CPTAC3 b90c867a-8e34-468c-9607-3edfabce3744 b48eb1ce5cd23b1a1f7db39b6d71c435 {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.RNA-Seq.chimeric.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.chimeric.gdc_realn.bam 79807136 BAM chimeric harmonized CPTAC3 a261d218-ee7f-4024-8b6b-1d99bd85c3f7 a0feddaffc9632ee4a36686d3765bbba {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.RNA-Seq.chimeric.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.chimeric.gdc_realn.bam 22433354 BAM chimeric harmonized CPTAC3 85f6ed6e-c706-41aa-a8e0-5f304f690b46 0ee9b444f410be6fd03ed9f688786c9f {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.RNA-Seq.genomic.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.genomic.gdc_realn.bam 8607414589 BAM genomic harmonized CPTAC3 5d0a8d22-e7cc-48cc-9e0b-4744b1e7f17d e91fd275020659921d37e186db62921f {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.RNA-Seq.genomic.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.genomic.gdc_realn.bam 6282101016 BAM genomic harmonized CPTAC3 b7718bc1-975f-4b27-9ac3-636ddc269956 962628b33beec7947d1cd4d9857ca098 {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.RNA-Seq.S15_L004_R1.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3939725902 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 9fe2189b-e03b-42d3-bc1f-19f3829bf551 8057975f528fba65d2313038391f618f {"aliquot_tag": "ALQ_c29a500d", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.RNA-Seq.S15_L004_R2.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 4361112402 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 f95401df-78c3-46a4-a075-cdd8bb3856b1 740ef893cbd8c5abc51b12c124f1597a {"aliquot_tag": "ALQ_c29a500d", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.RNA-Seq.S3_L007_R1.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R1_001.fastq.gz 2805732760 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 03ec3625-746d-4c60-ad33-cc0e6520e289 0d84bc4017aa50cea3715942543c0660 {"aliquot_tag": "ALQ_ae639d38", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.RNA-Seq.S3_L007_R2.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R2_001.fastq.gz 3083737852 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 1d4cfed2-ff66-4d0e-8835-596d493dfdf9 16a4dd426301e436038820a9db0e7273 {"aliquot_tag": "ALQ_ae639d38", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.RNA-Seq.transcriptome.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.transcriptome.gdc_realn.bam 9923232781 BAM transcriptome harmonized CPTAC3 15b692be-cfce-437c-bc13-5063cde2f620 e83f86a1bbdbb1edde113306b423dd54 {"aliquot_tag": "ALQ_c29a500d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.RNA-Seq.transcriptome.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.transcriptome.gdc_realn.bam 6173625416 BAM transcriptome harmonized CPTAC3 c50393fd-e6c1-42b0-af8a-6c43682c92b9 ec95a84c566386c6f462d137101c00a1 {"aliquot_tag": "ALQ_ae639d38", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.WGS.A C3N-01016 LUAD WGS tissue_normal CPT0083810009 CPT0083810009.WholeGenome.RP-1303.bam 61749987217 BAM submitted_aligned CPTAC3 3bf3855f-c4a6-4a68-99b0-6ad707795183 17b4179dc8fa2a694d1cb8118d116c08 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.WGS.A.hg38 C3N-01016 LUAD WGS tissue_normal CPT0083810009 a6ab0136-7ec4-4ec9-9f29-415c78515d9c_wgs_gdc_realn.bam 89760042482 BAM harmonized CPTAC3 fa218704-43eb-41b4-a247-b808f483a7a0 193db45e82e056104f05898390d0bee4 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.WGS.N C3N-01016 LUAD WGS blood_normal CPT0083830002 CPT0083830002.WholeGenome.RP-1303.bam 64051103324 BAM submitted_aligned CPTAC3 f16ddce0-e481-4956-84e5-d2a3adf141f1 0cd22bd62a3ed0b1185bb3ea86ebea2c {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01016.WGS.N.hg38 C3N-01016 LUAD WGS blood_normal CPT0083830002 5fcf480f-d48f-4fd6-940b-051912cd9943_gdc_realn.bam 97369674939 BAM harmonized CPTAC3 57eee6a7-effa-4a86-953f-77dac8c309a5 a80794f6217e6f93f5edb0ab3293c4ab {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01016.WGS.T C3N-01016 LUAD WGS tumor CPT0083780006 CPT0083780006.WholeGenome.RP-1303.bam 66807844114 BAM submitted_aligned CPTAC3 fc517679-1328-4e74-9a6c-bc08a9c9112e b503dd0bd1ae1b7fc72949d05a1e278c {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.WGS.T.hg38 C3N-01016 LUAD WGS tumor CPT0083780006 b7314944-d4d1-4f1c-9359-5c631f7c5041_gdc_realn.bam 98232882829 BAM harmonized CPTAC3 fec09b12-5744-4e5d-841c-7cda0c5990d3 f1169b7de526a729250c147e8bbcaeae {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.WXS.A C3N-01016 LUAD WXS tissue_normal CPT0083810009 CPT0083810009.WholeExome.RP-1303.bam 29674328639 BAM submitted_aligned CPTAC3 484e1730-1206-4909-95a3-891880256c03 9e23d2eea76f30dee9f3835c9660fadf {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.WXS.A.hg38 C3N-01016 LUAD WXS tissue_normal CPT0083810009 a6ab0136-7ec4-4ec9-9f29-415c78515d9c_wxs_gdc_realn.bam 41126662381 BAM harmonized CPTAC3 127d5ffc-d163-4fde-80d8-454928db8fe4 78977f80ca1d8893f2b755e9a506f9f5 {"aliquot_tag": "ALQ_52254d9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01016.WXS.N C3N-01016 LUAD WXS blood_normal CPT0083830002 CPT0083830002.WholeExome.RP-1303.bam 24042489144 BAM submitted_aligned CPTAC3 be150b89-b0ee-4833-a13b-13a8b677c21f 10e6b5f779191869c59857ae91784fc5 {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01016.WXS.N.hg38 C3N-01016 LUAD WXS blood_normal CPT0083830002 5fcf480f-d48f-4fd6-940b-051912cd9943_gdc_realn.bam 31842930452 BAM harmonized CPTAC3 3b919d7b-c595-4318-b9e2-2ac73303b590 02324a5b53871a98054cf8b5ae7d0789 {"aliquot_tag": "ALQ_bf37c774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01016.WXS.T C3N-01016 LUAD WXS tumor CPT0083780006 CPT0083780006.WholeExome.RP-1303.bam 32533551125 BAM submitted_aligned CPTAC3 0960a457-0b3c-41e6-8599-9dba14a17540 213db389e485136cf327a2ca87c50d1b {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01016.WXS.T.hg38 C3N-01016 LUAD WXS tumor CPT0083780006 b7314944-d4d1-4f1c-9359-5c631f7c5041_gdc_realn.bam 45058626386 BAM harmonized CPTAC3 4951d2d3-d7b8-4ae0-a4e4-f6b2eb998334 2d890136f42709dc9de4e5156c34d291 {"aliquot_tag": "ALQ_3edc80a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.MethArray.Green.A C3N-01017 LSCC Methylation_Array tissue_normal CPT0069900009 203219650165_R03C01_Grn.idat 13676220 IDAT Green NA CPTAC3 4c9514d9-fcd5-416b-be99-763d419be068 ec8f7da7b7486c535f62bd5d3c2be8f4 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.MethArray.Green.T C3N-01017 LSCC Methylation_Array tumor CPT0069890006 202184990008_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6fbea4a5-b7f4-4e0b-95cd-aa947b3ad522 d4228292c0230d6c56e6f4a930e7fffc {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.MethArray.Red.A C3N-01017 LSCC Methylation_Array tissue_normal CPT0069900009 203219650165_R03C01_Red.idat 13676220 IDAT Red NA CPTAC3 ac1a4155-adbf-41e5-8085-77315a2ce690 badb2aadf37bcf119e9dc1592b5c05b9 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.MethArray.Red.T C3N-01017 LSCC Methylation_Array tumor CPT0069890006 202184990008_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 b25adf68-2029-4b9d-9819-ee084a0b0ea0 954c1f6cff5c39c75b6d1e0fe806b526 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.miRNA-Seq.A.hg38 C3N-01017 LSCC miRNA-Seq tissue_normal CPT0069900006 382a4a60-11b1-42dd-a81a-7a84c75d40da_mirnaseq_gdc_realn.bam 225983948 BAM harmonized CPTAC3 1284761d-dca2-4fd5-9097-7badbd93f97a 9a682f328cf2737e3a047bbdb53b670a {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.miRNA-Seq.S33_L006_R1.A C3N-01017 LSCC miRNA-Seq tissue_normal CPT0069900006 181113_UNC31-K00269_0164_AH23NNBBXY_GATCAG_S33_L006_R1_001.unaln.bam 204424675 BAM S33_L006_R1 submitted_unaligned CPTAC3 0b910566-e13e-433d-9361-75bc14b7bd66 04e9bd970c3cb2c354b91d035271f2ed {"aliquot_tag": "ALQ_855ce764", "sample": "S33", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.miRNA-Seq.S46_L008_R1.T C3N-01017 LSCC miRNA-Seq tumor CPT0069890009 181012_UNC32-K00270_0124_AH223CBBXY_ATGAGC_S46_L008_R1_001.unaln.bam 209764077 BAM S46_L008_R1 submitted_unaligned CPTAC3 2a24427e-fe62-46d6-92a5-be607d7fc025 973d1437aeebaad8f1a33b6184b7309a {"aliquot_tag": "ALQ_d3af4b21", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.miRNA-Seq.T.hg38 C3N-01017 LSCC miRNA-Seq tumor CPT0069890009 db52a607-33e0-46e3-843b-70e950d7d4bb_mirnaseq_gdc_realn.bam 240595029 BAM harmonized CPTAC3 820de256-7bd6-41b7-bf7a-055315802484 a1bda4060f740099ef007d73d4d12d61 {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.RNA-Seq.chimeric.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.chimeric.gdc_realn.bam 35077180 BAM chimeric harmonized CPTAC3 6bce2f71-0b72-4198-85bd-42329ed0114a 66a85aa77bbbf37a7ed85b7c503dbef7 {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.RNA-Seq.chimeric.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.chimeric.gdc_realn.bam 26705329 BAM chimeric harmonized CPTAC3 242c7845-a44c-4aad-ace6-7b6bc010d73a 8bc29e04a3f7d44c0f2d35eb9918c10f {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.RNA-Seq.genomic.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.genomic.gdc_realn.bam 7716273478 BAM genomic harmonized CPTAC3 dc7e1293-67ff-461c-aea8-42ea83c93346 4d4e675454a51ec3d9a954ac1ac48ee8 {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.RNA-Seq.genomic.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.genomic.gdc_realn.bam 7778510990 BAM genomic harmonized CPTAC3 ca269427-e989-433b-9c8e-d571725d0341 03f7653c41460abd0e60563e0eb15507 {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.RNA-Seq.S19_L005_R1.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3504193022 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 3f3023db-1b21-4122-8036-28c6d2ad20bb faa290801786133a38ba675a1390d748 {"aliquot_tag": "ALQ_855ce764", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.RNA-Seq.S19_L005_R2.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3844337829 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 a3928924-74dd-47f0-a936-4b789a057b5a e2e7d52643cced7d447f5189618bb7a4 {"aliquot_tag": "ALQ_855ce764", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.RNA-Seq.S5_L002_R1.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R1_001.fastq.gz 3567465031 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 5f1df8b3-0f2f-4951-9960-ffe5648f405a daad6fa5cbf936e2272b19e5275363a6 {"aliquot_tag": "ALQ_d3af4b21", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.RNA-Seq.S5_L002_R2.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R2_001.fastq.gz 3828443095 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 20e79feb-035d-42ea-9583-e9aa9da6f1d5 934c9511279d389d401da4218e0141e6 {"aliquot_tag": "ALQ_d3af4b21", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.RNA-Seq.transcriptome.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.transcriptome.gdc_realn.bam 9778903530 BAM transcriptome harmonized CPTAC3 39049207-ca50-4498-9191-6c66863f9a09 4d038e5bb065dcf7474f30eed0c9ffa7 {"aliquot_tag": "ALQ_855ce764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.RNA-Seq.transcriptome.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.transcriptome.gdc_realn.bam 8728528374 BAM transcriptome harmonized CPTAC3 c9e0ce8e-fdee-419d-860f-5dff620c28fd 7cce4990ea24e166ab50cc7d22029e16 {"aliquot_tag": "ALQ_d3af4b21", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.WGS.A C3N-01017 LSCC WGS tissue_normal CPT0069900009 CPT0069900009.WholeGenome.RP-1303.bam 65404963360 BAM submitted_aligned CPTAC3 cc742217-0711-43d0-a2fd-341b70595ad0 84eb0f7956f54a7776e71ed26e47a4c8 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.WGS.A.hg38 C3N-01017 LSCC WGS tissue_normal CPT0069900009 77ab1337-2692-4476-bb3f-0b72a3a80b95_wgs_gdc_realn.bam 94421567698 BAM harmonized CPTAC3 cb7d814e-3b60-46db-9563-6f4847abca7c 8afd38a63b7592c6727d073b11af826e {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.WGS.N C3N-01017 LSCC WGS blood_normal CPT0069980002 CPT0069980002.WholeGenome.RP-1303.bam 75335077274 BAM submitted_aligned CPTAC3 1c87a114-2b1b-4d4a-bcad-7d37a88c5833 008b7d0a67daee6ac333bda28163b876 {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01017.WGS.N.hg38 C3N-01017 LSCC WGS blood_normal CPT0069980002 f7c268a1-b7d6-4e9a-891d-55de4dccae4a_gdc_realn.bam 113216154553 BAM harmonized CPTAC3 0a6de050-ae97-46ce-af90-687cab44d66d 5b17e081fa3dcc2daf9f689c4bf90d1d {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01017.WGS.T C3N-01017 LSCC WGS tumor CPT0069890006 CPT0069890006.WholeGenome.RP-1303.bam 74765863582 BAM submitted_aligned CPTAC3 db5313f1-a48d-45a4-a6a9-2ba5f4a9fe75 8a2abf61de28bba9eaa823380866fd64 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.WGS.T.hg38 C3N-01017 LSCC WGS tumor CPT0069890006 e4f28c38-427f-4133-9424-10f35a261de4_gdc_realn.bam 112034013327 BAM harmonized CPTAC3 7696b433-05b6-497f-b513-f1790149787d 3d7648d9f29da39ac86ab7cc6c36a7d6 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.WXS.A C3N-01017 LSCC WXS tissue_normal CPT0069900009 CPT0069900009.WholeExome.RP-1303.bam 30906450140 BAM submitted_aligned CPTAC3 b5521444-8346-4c50-8f24-97d61ac091d4 b5c926fe2ab8765ec22ac12e90376d93 {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.WXS.A.hg38 C3N-01017 LSCC WXS tissue_normal CPT0069900009 77ab1337-2692-4476-bb3f-0b72a3a80b95_wxs_gdc_realn.bam 42077182076 BAM harmonized CPTAC3 4018c39a-2ac4-4f5b-8b4b-6508618e8ec8 345f1f99e46f24fd469570c40f3d31fb {"aliquot_tag": "ALQ_15e3faf5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01017.WXS.N C3N-01017 LSCC WXS blood_normal CPT0069980002 CPT0069980002.WholeExome.RP-1303.bam 32160617568 BAM submitted_aligned CPTAC3 4ba0beee-bf5c-43d4-bde3-12d735134ac4 11b14394905a97d2eedc16cea5797878 {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01017.WXS.N.hg38 C3N-01017 LSCC WXS blood_normal CPT0069980002 f7c268a1-b7d6-4e9a-891d-55de4dccae4a_gdc_realn.bam 44133525864 BAM harmonized CPTAC3 c8f97c22-a5e5-4a29-82ac-94a83be13c2c 293d5ba1c90715b77bb91a1c5d0f9bb3 {"aliquot_tag": "ALQ_b24168bc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01017.WXS.T C3N-01017 LSCC WXS tumor CPT0069890006 CPT0069890006.WholeExome.RP-1303.bam 27496143532 BAM submitted_aligned CPTAC3 7b517054-0228-400d-8ecb-6e5caee4c08a 4e2ad613f2d69b6e5459eb884486f462 {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01017.WXS.T.hg38 C3N-01017 LSCC WXS tumor CPT0069890006 e4f28c38-427f-4133-9424-10f35a261de4_gdc_realn.bam 38182844792 BAM harmonized CPTAC3 d7ebebd0-c42f-4400-8ad9-45dc1e698712 f3488a430cfb7b20a1fb128a53f3217c {"aliquot_tag": "ALQ_431056b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01018.MethArray.Green.A C3N-01018 LSCC Methylation_Array tissue_normal CPT0104950009 203219650218_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 756f075d-558b-44ef-b93f-01536bacb8dd e8def0fc3962c164d64d005ae12e3711 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.MethArray.Green.T C3N-01018 LSCC Methylation_Array tumor CPT0104930009 202234380051_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4ea8b7a5-b36e-498d-9af1-b8f5769d37e4 684f60185cf7d8bb0a30b8ef494d02e6 {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.MethArray.Red.A C3N-01018 LSCC Methylation_Array tissue_normal CPT0104950009 203219650218_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 4b949694-253b-4a11-9f81-df2a0ea5abd2 d399f22f8609a9e570ccb6e64d085927 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.MethArray.Red.T C3N-01018 LSCC Methylation_Array tumor CPT0104930009 202234380051_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 525982d4-ea92-40dd-a708-df8ff5e2851b 19786576b288b985a7f171ec061f6d0c {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.miRNA-Seq.A.hg38 C3N-01018 LSCC miRNA-Seq tissue_normal CPT0104950006 d1d7efb0-e63d-4dd4-a044-b875c419a2f3_mirnaseq_gdc_realn.bam 273726361 BAM harmonized CPTAC3 f3d7c67a-679d-43c7-b055-7b5f0d894c67 178fda44a347ee1d477ec9efc591eafd {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.miRNA-Seq.S31_L004_R1.A C3N-01018 LSCC miRNA-Seq tissue_normal CPT0104950006 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L004_R1_001.unaln.bam 243249490 BAM S31_L004_R1 submitted_unaligned CPTAC3 73009847-fcc6-41bc-b167-ca0574f8750e b28c9408130aa5d1d30e14dc59d77aa8 {"aliquot_tag": "ALQ_fd7f1410", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.miRNA-Seq.S45_L007_R1.T C3N-01018 LSCC miRNA-Seq tumor CPT0104930006 181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L007_R1_001.unaln.bam 181235668 BAM S45_L007_R1 submitted_unaligned CPTAC3 bc2c7ec3-30e5-4426-b2a7-3b6223f2085f 266f97f1f80b4dd705185191f8020a69 {"aliquot_tag": "ALQ_723fe1b0", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.miRNA-Seq.T.hg38 C3N-01018 LSCC miRNA-Seq tumor CPT0104930006 c822dd30-9e9b-4573-9455-3c40ed138f78_mirnaseq_gdc_realn.bam 198530314 BAM harmonized CPTAC3 5c4797b0-3447-4af1-9380-388fa37dde41 961e00b72459fbddfdce8b41c8133e16 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.RNA-Seq.chimeric.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.chimeric.gdc_realn.bam 72282370 BAM chimeric harmonized CPTAC3 e3881fa3-1e6b-40a4-bf6f-8174b4b51141 538f9ba4ceacebb334ee683b7b6ff8c0 {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.RNA-Seq.chimeric.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.chimeric.gdc_realn.bam 37766587 BAM chimeric harmonized CPTAC3 b76490dd-5f82-4e52-80b2-439e4de1fbd6 bdf06ec70f1aeb47f7778cde84c00dd2 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.RNA-Seq.genomic.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.genomic.gdc_realn.bam 9689028429 BAM genomic harmonized CPTAC3 8a7d8902-3f65-4142-b7d9-f031ddf41c43 84efd9ff42fdf1af56e3282a5f44d101 {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.RNA-Seq.genomic.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.genomic.gdc_realn.bam 9436247146 BAM genomic harmonized CPTAC3 013aaf05-8f58-4b86-ab46-e84200076aef 1fa343e57d81540402af5a5c1e1bfa25 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.RNA-Seq.S17_L005_R1.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4226217192 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 a4de5c30-791c-4edc-930a-d47ecf694598 5fdf17bfe701e3067d3f46bd84e94e82 {"aliquot_tag": "ALQ_723fe1b0", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.RNA-Seq.S17_L005_R2.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836971452 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 c3d91e6a-042c-459f-ba03-cdaf097640e3 69b85c4a6c19f44c8c040d13bfa7d0c1 {"aliquot_tag": "ALQ_723fe1b0", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.RNA-Seq.S2_L007_R1.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R1_001.fastq.gz 4416913150 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 30102117-9e4f-4b22-9bd1-b129c1ff2d1a e6c93562ebeeaa5e29dbd90c92c1d34a {"aliquot_tag": "ALQ_fd7f1410", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.RNA-Seq.S2_L007_R2.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R2_001.fastq.gz 4874949133 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 29a968a9-6cfc-4815-ae9c-06423a57d425 b0fd4b2f5863ccbf1a928bee368ffb43 {"aliquot_tag": "ALQ_fd7f1410", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.RNA-Seq.transcriptome.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.transcriptome.gdc_realn.bam 11552301657 BAM transcriptome harmonized CPTAC3 2458e96b-f860-447d-8189-2c34f723676d 9dff8b8bc81526bdd90e53235c4bb2aa {"aliquot_tag": "ALQ_fd7f1410", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.RNA-Seq.transcriptome.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.transcriptome.gdc_realn.bam 12173696406 BAM transcriptome harmonized CPTAC3 cce5e8b1-5c81-4b0b-94d5-690864438c51 33124697b6b4f01ca1d68bf1eff75738 {"aliquot_tag": "ALQ_723fe1b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.WGS.A C3N-01018 LSCC WGS tissue_normal CPT0104950009 CPT0104950009.WholeGenome.RP-1303.bam 62748790744 BAM submitted_aligned CPTAC3 442e1896-1199-46a5-b935-da47bb5f839b 51f955a1681d15b51557f9fda97e7ed2 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.WGS.A.hg38 C3N-01018 LSCC WGS tissue_normal CPT0104950009 159fc77a-455a-46de-9c44-faa86e646fc2_wgs_gdc_realn.bam 91926512838 BAM harmonized CPTAC3 219aa7fc-a48b-4a77-8d08-b35109a33e20 2c3a8877c051d3483be6be9bfd7c8c1b {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.WGS.N C3N-01018 LSCC WGS blood_normal CPT0107500002 CPT0107500002.WholeGenome.RP-1303.bam 64039399353 BAM submitted_aligned CPTAC3 a0f1fdc4-6bfd-48d6-86fd-bff9a8d91fa2 24c045d5f4552b40b6bcadbb18a04037 {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01018.WGS.N.hg38 C3N-01018 LSCC WGS blood_normal CPT0107500002 32cbd60f-52ec-4d82-890e-098dcb8e0c6f_wgs_gdc_realn.bam 94743426427 BAM harmonized CPTAC3 4f7a0c9b-8708-4f8f-8de2-1ea3a7a6b13a cad72ee75ee7862a05738b3ef96e7e21 {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01018.WGS.T C3N-01018 LSCC WGS tumor CPT0104930009 CPT0104930009.WholeGenome.RP-1303.bam 64751029559 BAM submitted_aligned CPTAC3 f1480052-69b2-470e-a9ed-6bd89f8a01a5 0db96c40ca5887b7a06e448e7d22fa50 {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.WGS.T.hg38 C3N-01018 LSCC WGS tumor CPT0104930009 267cd1b6-4e5c-4cc7-9909-d0a3a7132719_wgs_gdc_realn.bam 96362628243 BAM harmonized CPTAC3 05fe41a8-401b-47a2-82be-b7b9420a2671 6e0fb957241b162ec8c97d3528b78df0 {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.WXS.A C3N-01018 LSCC WXS tissue_normal CPT0104950009 CPT0104950009.WholeExome.RP-1303.bam 30660019892 BAM submitted_aligned CPTAC3 9d9f0af5-c658-4906-a601-f923b71ad2cb c5511ffd410a6ccc13624896f3544b65 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.WXS.A.hg38 C3N-01018 LSCC WXS tissue_normal CPT0104950009 159fc77a-455a-46de-9c44-faa86e646fc2_wxs_gdc_realn.bam 41694356585 BAM harmonized CPTAC3 1e09caf3-763a-4cd9-8499-b27e49e17534 165fb5b6dc58d85409770c6ac23318a6 {"aliquot_tag": "ALQ_6dc00981", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01018.WXS.N C3N-01018 LSCC WXS blood_normal CPT0107500002 CPT0107500002.WholeExome.RP-1303.bam 38353796999 BAM submitted_aligned CPTAC3 f768e522-375e-4f30-80db-f3946267f4d8 b468ac27928f6402ba1f32098f474933 {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01018.WXS.N.hg38 C3N-01018 LSCC WXS blood_normal CPT0107500002 32cbd60f-52ec-4d82-890e-098dcb8e0c6f_wxs_gdc_realn.bam 52895464723 BAM harmonized CPTAC3 19750858-9f8a-45c7-86f3-21042eac7e55 7449d382b2157701d5594f9b7eae731a {"aliquot_tag": "ALQ_74d8859f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01018.WXS.T C3N-01018 LSCC WXS tumor CPT0104930009 CPT0104930009.WholeExome.RP-1303.bam 38292481108 BAM submitted_aligned CPTAC3 064bf6da-ac66-4d13-a56c-4c19175529d9 815a6dd6c9b4dd694d1ba509eca752ec {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01018.WXS.T.hg38 C3N-01018 LSCC WXS tumor CPT0104930009 267cd1b6-4e5c-4cc7-9909-d0a3a7132719_wxs_gdc_realn.bam 52053567840 BAM harmonized CPTAC3 d2a6cd4d-1f0a-4794-b356-45cfe9f20f4c 604d6442c870b18224f6ebd779685aef {"aliquot_tag": "ALQ_e280fc21", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01019.MethArray.Green.A C3N-01019 LUAD Methylation_Array tissue_normal CPT0117700009 203028200034_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6493abe5-7138-43e0-86ef-4f3f8bcb9758 98e35bbc2b1d7a3c2773860e90a0146d {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.MethArray.Green.T C3N-01019 LUAD Methylation_Array tumor CPT0117680009 202234380102_R02C01_Grn.idat 13676232 IDAT Green NA CPTAC3 ba904cf0-3db4-4bbb-8f9c-f4a4c7b42a74 6a1c42c504e4d66550aeb6d29489f77f {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.MethArray.Red.A C3N-01019 LUAD Methylation_Array tissue_normal CPT0117700009 203028200034_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 59aa7666-d099-4db5-aa76-20dbe29ad6a8 ad140dc03f9ee1b83d77c60a2c923827 {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.MethArray.Red.T C3N-01019 LUAD Methylation_Array tumor CPT0117680009 202234380102_R02C01_Red.idat 13676232 IDAT Red NA CPTAC3 ae905b25-c650-49a0-abba-3f1b6ad834ca 93fc889889d4702008e3f8bfb66995c5 {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.miRNA-Seq.A.hg38 C3N-01019 LUAD miRNA-Seq tissue_normal CPT0117700006 a3cfb1f7-bccd-41b0-b619-fa6d664b265f_mirnaseq_gdc_realn.bam 285421540 BAM harmonized CPTAC3 c2ccaa2b-0d29-4dc7-8d91-e13774e016ff b36497a8faa3f6d288dd4ac0f49d9535 {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.miRNA-Seq.S1_L004_R1.T C3N-01019 LUAD miRNA-Seq tumor CPT0117680006 181119_UNC31-K00269_0165_AH27WCBBXY_ACTGAT_S1_L004_R1_001.unaln.bam 269200601 BAM S1_L004_R1 submitted_unaligned CPTAC3 e1c7f75a-e5fd-44a7-a20d-65d676fdc50a 03506b32aaaaa08a150e2d48443059b3 {"aliquot_tag": "ALQ_9fb7877", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.miRNA-Seq.S23_L005_R1.A C3N-01019 LUAD miRNA-Seq tissue_normal CPT0117700006 181108_UNC31-K00269_0162_AH255GBBXY_TCGAAG_S23_L005_R1_001.unaln.bam 258807860 BAM S23_L005_R1 submitted_unaligned CPTAC3 8adaa6c2-e3c3-43d6-9a08-3a20367e15bd 4995b0d21222094ad805cb6e104f7753 {"aliquot_tag": "ALQ_f2d7e013", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.miRNA-Seq.T.hg38 C3N-01019 LUAD miRNA-Seq tumor CPT0117680006 ca9e198c-01f2-4a1d-b2d7-1f1ff820d5d8_mirnaseq_gdc_realn.bam 291063049 BAM harmonized CPTAC3 2655a889-d465-42bf-92ec-47396bd8c4da 43ab9003b942bbf67ef645efab7a53c6 {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.RNA-Seq.chimeric.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.chimeric.gdc_realn.bam 134771467 BAM chimeric harmonized CPTAC3 0bd2a473-1d1e-402b-a907-708f53bd6f58 66f65c9a2773357a95ac2ed7a0999f8d {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.RNA-Seq.chimeric.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.chimeric.gdc_realn.bam 76293964 BAM chimeric harmonized CPTAC3 a169f2af-60d3-4a0a-865a-c55f2df0bc0f 3e6bcdc6150d6e4eaf02844ca6c981ae {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.RNA-Seq.genomic.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.genomic.gdc_realn.bam 8666489663 BAM genomic harmonized CPTAC3 20585263-4f89-45b4-aada-1aaf4b181df4 c32226ee8ff3eaedfa9ccf04c4d1186b {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.RNA-Seq.genomic.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.genomic.gdc_realn.bam 8667874933 BAM genomic harmonized CPTAC3 adabcb4b-fb81-4928-b54a-af5de8a64798 8e3f0dd159212775bae232395b68d3dd {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.RNA-Seq.S4_L001_R1.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R1_001.fastq.gz 4202397956 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 2428d363-4687-4ce3-8a94-b146fdf83a11 985d98e53de7e9d333bf6fbd53a18a1b {"aliquot_tag": "ALQ_f2d7e013", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.RNA-Seq.S4_L001_R2.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R2_001.fastq.gz 4600676738 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 e301ad57-81f8-4c52-8227-2762388038a8 ec4ceca55a7f76be9edf41044417f7c1 {"aliquot_tag": "ALQ_f2d7e013", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.RNA-Seq.S9_L003_R1.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R1_001.fastq.gz 3923610075 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 71626e11-461f-45a9-a78d-3728a072deaa ed815c179b0ec7b2f1d777541eeef735 {"aliquot_tag": "ALQ_9fb7877", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.RNA-Seq.S9_L003_R2.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R2_001.fastq.gz 4369741544 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 12608043-b64f-44c5-bbba-8795eb26d1a7 cb100ac8af60f599d73c25fe841691a7 {"aliquot_tag": "ALQ_9fb7877", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.RNA-Seq.transcriptome.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.transcriptome.gdc_realn.bam 10275634752 BAM transcriptome harmonized CPTAC3 6e4cf32f-6c11-4b53-bcfa-45dcdc415fce f15dcbb3581e570026d0a02c04df5db0 {"aliquot_tag": "ALQ_f2d7e013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.RNA-Seq.transcriptome.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.transcriptome.gdc_realn.bam 11146920650 BAM transcriptome harmonized CPTAC3 84156c71-f024-40c4-8f7e-5ef33474ba12 f4fc2510c8fa450ad17fd63c3bba8a0d {"aliquot_tag": "ALQ_9fb7877", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.WGS.A C3N-01019 LUAD WGS tissue_normal CPT0117700009 CPT0117700009.WholeGenome.RP-1303.bam 65276340698 BAM submitted_aligned CPTAC3 cc832662-73c7-4eea-9cef-2f6ab334de4b 450a47c487d5d4e83956b68e0cd5004e {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.WGS.A.hg38 C3N-01019 LUAD WGS tissue_normal CPT0117700009 90b0c8c6-9e8d-4015-8c68-3a96adee4184_wgs_gdc_realn.bam 95671822675 BAM harmonized CPTAC3 344949ad-1a00-4dfa-8a50-45f8dee29ada 666efe5d3a13e01deb17ce4f2e3247c6 {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.WGS.N C3N-01019 LUAD WGS blood_normal CPT0118910002 CPT0118910002.WholeGenome.RP-1303.bam 61034871670 BAM submitted_aligned CPTAC3 cd783fc6-feef-49ab-b2bf-3e7f7d7ae464 76368fc7cd53f3ee2257fcff3d7413eb {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01019.WGS.N.hg38 C3N-01019 LUAD WGS blood_normal CPT0118910002 2fd642b2-49e4-47ed-aa09-e55d1f01ec59_wgs_gdc_realn.bam 90294215581 BAM harmonized CPTAC3 cd1abc83-764b-4f89-abf0-b43b4f928871 8ef339209a66f22cf1a57b02daf4ff48 {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01019.WGS.T C3N-01019 LUAD WGS tumor CPT0117680009 CPT0117680009.WholeGenome.RP-1303.bam 65261143082 BAM submitted_aligned CPTAC3 b72a22db-0c45-4b49-a681-b1c59911534f 25215f7ffdaf626ff51b934b05f08de3 {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.WGS.T.hg38 C3N-01019 LUAD WGS tumor CPT0117680009 bf84a979-446c-47ae-98e4-c4bbb443e928_wgs_gdc_realn.bam 97078263484 BAM harmonized CPTAC3 e1bc2695-c010-4142-91f0-dc856496588b 046a7e2f3750ceb579a215390ec532e9 {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.WXS.A C3N-01019 LUAD WXS tissue_normal CPT0117700009 CPT0117700009.WholeExome.RP-1303.bam 33062851966 BAM submitted_aligned CPTAC3 10762702-d682-4fc4-aa39-426daef3d7a2 47225ba9629d78323474b14748843e52 {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.WXS.A.hg38 C3N-01019 LUAD WXS tissue_normal CPT0117700009 90b0c8c6-9e8d-4015-8c68-3a96adee4184_wxs_gdc_realn.bam 44483135862 BAM harmonized CPTAC3 99d90ef5-e5d3-49fb-be96-5db763123adc 29728cd954daa6243e8db37376db36dd {"aliquot_tag": "ALQ_6268fd82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01019.WXS.N C3N-01019 LUAD WXS blood_normal CPT0118910002 CPT0118910002.WholeExome.RP-1303.bam 32613826701 BAM submitted_aligned CPTAC3 e4dab2ab-907b-49f9-8b86-67af3a3484ec f013ac5187b4de3420abb21c461c01c2 {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01019.WXS.N.hg38 C3N-01019 LUAD WXS blood_normal CPT0118910002 2fd642b2-49e4-47ed-aa09-e55d1f01ec59_wxs_gdc_realn.bam 43124318089 BAM harmonized CPTAC3 153f503c-3d72-491c-b851-081b86a14f54 16be1dc1714633b5ea1fb1c2e67f9764 {"aliquot_tag": "ALQ_4981c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01019.WXS.T C3N-01019 LUAD WXS tumor CPT0117680009 CPT0117680009.WholeExome.RP-1303.bam 25226562449 BAM submitted_aligned CPTAC3 d76ac4ff-7f26-4f09-9e53-b99492be980a 6ed58f8a478d74439ca1e55d2c3cd57e {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01019.WXS.T.hg38 C3N-01019 LUAD WXS tumor CPT0117680009 bf84a979-446c-47ae-98e4-c4bbb443e928_wxs_gdc_realn.bam 33899352637 BAM harmonized CPTAC3 16373001-dc4a-42d6-9042-944b0cb8fd38 8ae1c5a4dffc877d721f1941dba96e3c {"aliquot_tag": "ALQ_994465e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.MethArray.Green.A C3N-01020 LSCC Methylation_Array tissue_normal CPT0117770006 203219650003_R01C01_Grn.idat 13676220 IDAT Green NA CPTAC3 731eba33-7344-41a4-8fd5-cef32ca9f09d 8c3a7b617e6ad33a08e6164b4f63f73a {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.MethArray.Green.T C3N-01020 LSCC Methylation_Array tumor CPT0117720009 203219750071_R01C01_Grn.idat 13676219 IDAT Green NA CPTAC3 1a94d765-b6ec-438d-adf7-1aeef2ce50a3 2e83b392b63b885e148b59880f47e0da {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.MethArray.Red.A C3N-01020 LSCC Methylation_Array tissue_normal CPT0117770006 203219650003_R01C01_Red.idat 13676220 IDAT Red NA CPTAC3 296ed9aa-09b8-40b4-9d03-3502bf99bd72 c8f74e66e6e185fde7fedb483fe72946 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.MethArray.Red.T C3N-01020 LSCC Methylation_Array tumor CPT0117720009 203219750071_R01C01_Red.idat 13676219 IDAT Red NA CPTAC3 7b01dc2c-dc8c-46c2-852d-7a76342003a3 4cdf511506b3ecb71707987ac083a213 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.miRNA-Seq.A.hg38 C3N-01020 LSCC miRNA-Seq tissue_normal CPT0117770009 b00a67a1-4d3b-431e-935b-04992e275cc9_mirnaseq_gdc_realn.bam 353364493 BAM harmonized CPTAC3 3f05d0a9-a9b1-4fde-b898-188a1a360f23 c0801832d654a44e64b0c2c745544b03 {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.miRNA-Seq.S38_L002_R1.A C3N-01020 LSCC miRNA-Seq tissue_normal CPT0117770009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTATAC_S38_L002_R1_001.unaln.bam 321565264 BAM S38_L002_R1 submitted_unaligned CPTAC3 d24c7e10-d922-42ad-a7e4-39ef465747b2 27163f918325f4d80d296b75b8fb2f8c {"aliquot_tag": "ALQ_d0482192", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.miRNA-Seq.S6_L001_R1.T C3N-01020 LSCC miRNA-Seq tumor CPT0117720006 181219_UNC31-K00269_0173_BHYGJJBBXX_GCCAAT_S6_L001_R1_001.unaln.bam 293734798 BAM S6_L001_R1 submitted_unaligned CPTAC3 fd8ef1e7-794a-49d0-8df7-d7a7d5e6c29f 99258f988843c6d8008ed4d64542df47 {"aliquot_tag": "ALQ_8817b373", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.miRNA-Seq.T.hg38 C3N-01020 LSCC miRNA-Seq tumor CPT0117720006 2b0a3602-d13b-43c4-9f99-610dec4fcf96_mirnaseq_gdc_realn.bam 317669156 BAM harmonized CPTAC3 c20fb282-03f1-49ff-9d4a-f3242e53c060 94d4e513aaa236bc153b50b677d55315 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.RNA-Seq.chimeric.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.chimeric.gdc_realn.bam 28261150 BAM chimeric harmonized CPTAC3 bc035c32-3925-45c8-a840-0a097c4767c3 7c30773492ad49bcb413531eb7c0e70d {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.RNA-Seq.chimeric.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.chimeric.gdc_realn.bam 31802827 BAM chimeric harmonized CPTAC3 15961d49-7425-4418-89fa-912cfd8bf469 8e6ed0485f6679f0e53877f7381e2505 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.RNA-Seq.genomic.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.genomic.gdc_realn.bam 9257620478 BAM genomic harmonized CPTAC3 8221d93e-9e82-4b33-9244-76deb9389bfe 374c129a011df7e809d68c62d510accd {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.RNA-Seq.genomic.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.genomic.gdc_realn.bam 9518227285 BAM genomic harmonized CPTAC3 a18ea587-1761-47ec-b0a0-6e32d92fc3bc a60a10fca8147ecf9ab6851497cced14 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.RNA-Seq.S21_L006_R1.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3767826549 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 eb0c01cb-bc87-493f-87ab-db4c087a9f63 4013675b85a21a3e61f8139331659406 {"aliquot_tag": "ALQ_d0482192", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.RNA-Seq.S21_L006_R2.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3930483443 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 865cf6e7-ff53-4b09-baef-56bbad087e8c 52a1f92e25a1d49716ac3a783a65ff07 {"aliquot_tag": "ALQ_d0482192", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.RNA-Seq.S22_L006_R1.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4158465649 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 87b9e4e2-6b01-4f3a-9473-eae51b82d31b d90bf682169573cd2448448260bdc5af {"aliquot_tag": "ALQ_8817b373", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.RNA-Seq.S22_L006_R2.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4444860378 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 8fd4b92b-fff9-48ac-86d1-2d61ebfe8b86 0a10087fc090e6b9972a1d55707153cf {"aliquot_tag": "ALQ_8817b373", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.RNA-Seq.transcriptome.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.transcriptome.gdc_realn.bam 9825633344 BAM transcriptome harmonized CPTAC3 a6779e56-5e09-43f8-b774-fa274e8aedf8 366ac736735ac4e76620a2b65f39a1a6 {"aliquot_tag": "ALQ_d0482192", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.RNA-Seq.transcriptome.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.transcriptome.gdc_realn.bam 10542938802 BAM transcriptome harmonized CPTAC3 5377b6e1-99e2-497b-9476-8c10e4595d25 b08c2ad1b48b0e1a5fe5caf91b8a40f3 {"aliquot_tag": "ALQ_8817b373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.WGS.A C3N-01020 LSCC WGS tissue_normal CPT0117770006 CPT0117770006.WholeGenome.RP-1303.bam 59364857670 BAM submitted_aligned CPTAC3 cf365a47-9a57-4b22-8017-56dde6977b4b 914261d2792fc9cef95757bdfb3ad784 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.WGS.A.hg38 C3N-01020 LSCC WGS tissue_normal CPT0117770006 29543f7c-4933-4205-8775-181c20696cf6_wgs_gdc_realn.bam 86355184819 BAM harmonized CPTAC3 ae17f21e-13a6-4dd1-a78b-7d29c61e0e25 545f6b97bc1c80897247255d8779d28f {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.WGS.N C3N-01020 LSCC WGS blood_normal CPT0118970002 CPT0118970002.WholeGenome.RP-1303.bam 59455765527 BAM submitted_aligned CPTAC3 3ad0e3bb-567b-4c61-b3c9-1a4a5cc8f826 c4734b4874535067ea5376750528547e {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01020.WGS.N.hg38 C3N-01020 LSCC WGS blood_normal CPT0118970002 3a7b901e-d06f-42da-9914-eef74275e002_wgs_gdc_realn.bam 87425000059 BAM harmonized CPTAC3 7c748ffc-76da-402c-ac35-3eacdffed03e 334dc703493f68868051b56405d567fd {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01020.WGS.T C3N-01020 LSCC WGS tumor CPT0117720009 CPT0117720009.WholeGenome.RP-1303.bam 60590809549 BAM submitted_aligned CPTAC3 04780cf2-9283-451f-8b18-57fdfe443d3b fa5ebdddd421ce2f70219d4c244ab1bf {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.WGS.T.hg38 C3N-01020 LSCC WGS tumor CPT0117720009 61e19b63-df4f-459e-9ca0-97e943d855d9_wgs_gdc_realn.bam 88537581155 BAM harmonized CPTAC3 773a7c69-6ed0-4b7b-9094-8759381c5a11 e06124c472c97dbc61615c190eb44ec6 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.WXS.A C3N-01020 LSCC WXS tissue_normal CPT0117770006 CPT0117770006.WholeExome.RP-1303.bam 23995671241 BAM submitted_aligned CPTAC3 014de518-ccab-4979-a3c1-09a8d4095662 2d8b79c8df5e9506802c04eb4a873db0 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.WXS.A.hg38 C3N-01020 LSCC WXS tissue_normal CPT0117770006 29543f7c-4933-4205-8775-181c20696cf6_wxs_gdc_realn.bam 33052637657 BAM harmonized CPTAC3 1b5394fc-d2d4-4e0e-8049-1f2b8e9aba49 087c2c36737c1628c63d4986e87ae892 {"aliquot_tag": "ALQ_40f73c03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01020.WXS.N C3N-01020 LSCC WXS blood_normal CPT0118970002 CPT0118970002.WholeExome.RP-1303.bam 29596669907 BAM submitted_aligned CPTAC3 de4573cb-a6fc-4556-9566-71fadb8381d7 60ff419ee67931d79ad5f90fdba85c1d {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01020.WXS.N.hg38 C3N-01020 LSCC WXS blood_normal CPT0118970002 3a7b901e-d06f-42da-9914-eef74275e002_wxs_gdc_realn.bam 41103495021 BAM harmonized CPTAC3 b768e63b-8d6f-4162-bdf2-2b22861890de ae83d732c93ef9b39ccc25ad3f64691a {"aliquot_tag": "ALQ_8bd8e983", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01020.WXS.T C3N-01020 LSCC WXS tumor CPT0117720009 CPT0117720009.WholeExome.RP-1303.bam 20752341201 BAM submitted_aligned CPTAC3 adb6a4fe-47a8-4f7e-a7c9-b40ceaf06649 32403bd93aeb8652cd14c5cfb1f42640 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01020.WXS.T.hg38 C3N-01020 LSCC WXS tumor CPT0117720009 61e19b63-df4f-459e-9ca0-97e943d855d9_wxs_gdc_realn.bam 28644766104 BAM harmonized CPTAC3 98bded88-48e5-4719-a4f0-105276d13bd2 1b5cf85006b1a2e39c147d477f68a507 {"aliquot_tag": "ALQ_18a8aee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.MethArray.Green.A C3N-01021 LUAD Methylation_Array tissue_normal CPT0105010010 203027390028_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 725eca74-82f6-4c3c-b7fc-ab8928f7e7e2 a6f5b67e618badfc4fb35beda4423659 {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.MethArray.Green.T C3N-01021 LUAD Methylation_Array tumor CPT0104970009 202234370119_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 b452caf9-d265-4e5e-abea-ec5e2829e6df 0371175be862aafc10b2cbdbe00303ea {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.MethArray.Red.A C3N-01021 LUAD Methylation_Array tissue_normal CPT0105010010 203027390028_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 a773b78e-9f9a-4f0e-ab99-9568e77b8d98 3f1e1bcf8ace6638222ccf79010b701e {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.MethArray.Red.T C3N-01021 LUAD Methylation_Array tumor CPT0104970009 202234370119_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 f8bb1ebe-ac45-4692-ba91-9471fd9972f4 8877e7c854ec7fb58acf01e1195acb59 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.miRNA-Seq.A.hg38 C3N-01021 LUAD miRNA-Seq tissue_normal CPT0105010007 b550490b-3daa-4cab-a605-5429fa8efe63_mirnaseq_gdc_realn.bam 198926766 BAM harmonized CPTAC3 21155fa7-3f12-4c27-a069-2f958b1e59b5 64dd6065a2ce8f415e9453e14104a86c {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.miRNA-Seq.S40_L002_R1.A C3N-01021 LUAD miRNA-Seq tissue_normal CPT0105010007 181108_UNC31-K00269_0163_BH23TVBBXY_CTCAGA_S40_L002_R1_001.unaln.bam 175194172 BAM S40_L002_R1 submitted_unaligned CPTAC3 7fb6e1d1-fcdf-4739-af38-df515bbb9f52 5d862d1a9f4066e5901ff239780321b2 {"aliquot_tag": "ALQ_fe80d83a", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.miRNA-Seq.S46_L007_R1.T C3N-01021 LUAD miRNA-Seq tumor CPT0104970006 181108_UNC31-K00269_0163_BH23TVBBXY_TCCCGA_S46_L007_R1_001.unaln.bam 188444789 BAM S46_L007_R1 submitted_unaligned CPTAC3 c485cbc7-847c-4fe1-b022-635a0be0e375 f6440855e4b0c37b81a47dcf462bbeb8 {"aliquot_tag": "ALQ_87bf4770", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.miRNA-Seq.T.hg38 C3N-01021 LUAD miRNA-Seq tumor CPT0104970006 23581f03-f7b1-4aab-bcf3-2094ad31aede_mirnaseq_gdc_realn.bam 210283639 BAM harmonized CPTAC3 ddc23276-a5b4-49a3-b8d9-7fcc21d1a09f 6649b439b2ec248f58d450e54db1667d {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.RNA-Seq.chimeric.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.chimeric.gdc_realn.bam 40153541 BAM chimeric harmonized CPTAC3 2e9cf6f2-1d18-4c29-b6db-95805496ed22 e78e09d7a351feff09446b2610ccbb4a {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.RNA-Seq.chimeric.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.chimeric.gdc_realn.bam 36785584 BAM chimeric harmonized CPTAC3 116a4351-abdc-408a-9f7c-87f7595c4b25 af37284da5a8ef2c5e1e559f9c78ca5a {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.RNA-Seq.genomic.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.genomic.gdc_realn.bam 5406729546 BAM genomic harmonized CPTAC3 4662173f-51fc-44ea-a0dc-108134eb640e 68f790b57e327ef736760dbb726769f7 {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.RNA-Seq.genomic.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.genomic.gdc_realn.bam 9344488438 BAM genomic harmonized CPTAC3 f3c1f810-e214-488c-9ed6-43fd3921663b 742e72c689734b9407a897b7c96901d4 {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.RNA-Seq.S17_L005_R1.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 2900719030 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 25d695db-0aa8-4265-8f02-25b4bdc16f6b 6bb7b2290ddbd519536f6f83e1fcb173 {"aliquot_tag": "ALQ_fe80d83a", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.RNA-Seq.S17_L005_R2.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 2918591188 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 074561b0-dcb3-45ab-98e4-ecf1f3886d8d 7133ac0baaea9e7c0683e9e0a8187f4b {"aliquot_tag": "ALQ_fe80d83a", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.RNA-Seq.S20_L005_R1.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4351787179 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 fe4bc94d-b681-40dc-bde1-9615746d3f45 28526012b35cb8f626665cda5167e214 {"aliquot_tag": "ALQ_87bf4770", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.RNA-Seq.S20_L005_R2.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4814181149 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 463940ad-cae2-4be7-bfe7-77782919f58f c28c25b74aa3f0b217c58da530a52514 {"aliquot_tag": "ALQ_87bf4770", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.RNA-Seq.transcriptome.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.transcriptome.gdc_realn.bam 6255914878 BAM transcriptome harmonized CPTAC3 bafe657b-c6e5-468f-9090-9cd40bdfe8b8 59a09679fdaaeb0985e5f99a356182ae {"aliquot_tag": "ALQ_fe80d83a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.RNA-Seq.transcriptome.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.transcriptome.gdc_realn.bam 11976339701 BAM transcriptome harmonized CPTAC3 b12a0c1b-12e0-45d7-b03e-f83d577e012c f5fdebfe021f6ffdcdfd070c4906dbb1 {"aliquot_tag": "ALQ_87bf4770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.WGS.A C3N-01021 LUAD WGS tissue_normal CPT0105010010 CPT0105010010.WholeGenome.RP-1303.bam 56980708351 BAM submitted_aligned CPTAC3 7b797502-1fe6-42fd-8ea0-26f656bdda94 aa265548667f82e57432625a53374141 {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.WGS.A.hg38 C3N-01021 LUAD WGS tissue_normal CPT0105010010 d7d51562-4b03-475f-957a-18bf0fe7ffa5_wgs_gdc_realn.bam 84144213609 BAM harmonized CPTAC3 eecd1619-e464-47da-8c02-25a431640223 5e0cf7759ecc5217956a6fdcd59b8318 {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.WGS.N C3N-01021 LUAD WGS blood_normal CPT0107560002 CPT0107560002.WholeGenome.RP-1303.bam 75987364643 BAM submitted_aligned CPTAC3 024db387-74b8-4fbd-88ac-9a3e79bcae2c b4d9ed64d30a9850fc2d50837a6bc3b6 {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01021.WGS.N.hg38 C3N-01021 LUAD WGS blood_normal CPT0107560002 fc900e46-4670-4fd9-ab78-ce18452fcb32_wgs_gdc_realn.bam 114065162253 BAM harmonized CPTAC3 10064d24-13b8-4350-81c2-27d5e1448f2d 358b5d7266a6ceab799658fe9a8da9cb {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01021.WGS.T C3N-01021 LUAD WGS tumor CPT0104970009 CPT0104970009.WholeGenome.RP-1303.bam 60306973320 BAM submitted_aligned CPTAC3 4035021a-a695-4b0a-a327-d97f7e010920 e3957a5c2d07d0f14b00853d05dc0785 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.WGS.T.hg38 C3N-01021 LUAD WGS tumor CPT0104970009 6e8c1ae0-ff66-4df1-834d-ce7788106d40_wgs_gdc_realn.bam 88695661530 BAM harmonized CPTAC3 004c6292-6780-46ca-8897-2b676a0542a5 9d1b5678e29aea1d66cd192aa39c0c97 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.WXS.A C3N-01021 LUAD WXS tissue_normal CPT0105010010 CPT0105010010.WholeExome.RP-1303.bam 39109020070 BAM submitted_aligned CPTAC3 dce669a7-beb4-49f9-ba1a-eae76ae75540 ed2eda70daaac2bc1d9656f4037bb34e {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.WXS.A.hg38 C3N-01021 LUAD WXS tissue_normal CPT0105010010 d7d51562-4b03-475f-957a-18bf0fe7ffa5_wxs_gdc_realn.bam 52040747726 BAM harmonized CPTAC3 7ca007f5-1403-4a23-b90b-211b39ecfdac 359e8dcb04d112a366eb6e8e02b342ab {"aliquot_tag": "ALQ_79ff7cd8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01021.WXS.N C3N-01021 LUAD WXS blood_normal CPT0107560002 CPT0107560002.WholeExome.RP-1303.bam 37644710038 BAM submitted_aligned CPTAC3 52ea84dc-f032-4e72-aa4d-ad96ccae3652 3560288db059b7dc560a5f989d78bd30 {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01021.WXS.N.hg38 C3N-01021 LUAD WXS blood_normal CPT0107560002 fc900e46-4670-4fd9-ab78-ce18452fcb32_wxs_gdc_realn.bam 50208440021 BAM harmonized CPTAC3 37caa502-9001-4efb-933f-3d6df36c8123 63feb5af3162958539404bbda463f37d {"aliquot_tag": "ALQ_fb98703f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01021.WXS.T C3N-01021 LUAD WXS tumor CPT0104970009 CPT0104970009.WholeExome.RP-1303.bam 37790182159 BAM submitted_aligned CPTAC3 a5b6178d-a358-449d-8893-2f492123fbe3 cbb1f5ff1392fcb38c769624f845eeac {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01021.WXS.T.hg38 C3N-01021 LUAD WXS tumor CPT0104970009 6e8c1ae0-ff66-4df1-834d-ce7788106d40_wxs_gdc_realn.bam 50946474273 BAM harmonized CPTAC3 f5a5607b-9237-4ad9-88a2-ef219be0c0e7 a414e6e3aaf622fbc6a6edb36481d7d9 {"aliquot_tag": "ALQ_17005ae1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.MethArray.Green.A C3N-01022 LUAD Methylation_Array tissue_normal CPT0117820009 203027390120_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fb8e3f75-8660-4888-b7ee-a51d74a1fb18 b96e20151c90ed5529ee8ec4213db4b9 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.MethArray.Green.T C3N-01022 LUAD Methylation_Array tumor CPT0117790009 202234370120_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fe2439f8-866b-4b28-8a22-d11a77469360 4661c9f6ec3512e323d54c855540be04 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.MethArray.Red.A C3N-01022 LUAD Methylation_Array tissue_normal CPT0117820009 203027390120_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 b8502e14-6cd7-430a-9af9-73181c58c224 dce360ad747c86962d4af7081c9ac281 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.MethArray.Red.T C3N-01022 LUAD Methylation_Array tumor CPT0117790009 202234370120_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 32168740-c64f-4198-ae97-93df02cfd189 2d347095ae92170a18e99e2c59de5d3c {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.miRNA-Seq.A.hg38 C3N-01022 LUAD miRNA-Seq tissue_normal CPT0117820006 e8ff5787-3260-436e-9b7c-07480286834c_mirnaseq_gdc_realn.bam 270371251 BAM harmonized CPTAC3 9f1dbd34-0c37-4e2f-aee6-b500e3d00bb2 4ead8737a8292166b8a130ca4e262800 {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.miRNA-Seq.S24_L005_R1.A C3N-01022 LUAD miRNA-Seq tissue_normal CPT0117820006 181108_UNC31-K00269_0162_AH255GBBXY_TCGGCA_S24_L005_R1_001.unaln.bam 245742562 BAM S24_L005_R1 submitted_unaligned CPTAC3 2c908ffa-616b-43dc-9e00-e62e7e0d6184 7906d0fd53a1cfa8b92fdef017aa3697 {"aliquot_tag": "ALQ_794101a6", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.miRNA-Seq.S2_L004_R1.T C3N-01022 LUAD miRNA-Seq tumor CPT0117790006 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L004_R1_001.unaln.bam 221467585 BAM S2_L004_R1 submitted_unaligned CPTAC3 77b4a9d3-77a6-4fbd-b794-4c19a4f94a18 760db0648e4d7cdaec5bbc92a4abaabc {"aliquot_tag": "ALQ_ffc78262", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.miRNA-Seq.T.hg38 C3N-01022 LUAD miRNA-Seq tumor CPT0117790006 be28b133-655a-4302-9d95-52fed80de8e9_mirnaseq_gdc_realn.bam 236496218 BAM harmonized CPTAC3 d88576a7-d243-4093-9b8c-4d404e02ac06 a1f807a751951b5569a510c47f65f8f8 {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.RNA-Seq.chimeric.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.chimeric.gdc_realn.bam 69040602 BAM chimeric harmonized CPTAC3 83fd720f-044c-45d0-b4d8-d1badb298d31 7db523605a3ee91250fc1fd8424ab210 {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.RNA-Seq.chimeric.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.chimeric.gdc_realn.bam 89601635 BAM chimeric harmonized CPTAC3 7b8df212-f8ce-4d15-bf27-20706d6ce01a e9aa3015afe16405c39618b8676cb28b {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.RNA-Seq.genomic.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.genomic.gdc_realn.bam 7527084440 BAM genomic harmonized CPTAC3 1d34ecf0-a7d2-4b44-a582-8272b6eb1c5d 17c9b4bdaf6d0425467dadba14cc8a78 {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.RNA-Seq.genomic.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.genomic.gdc_realn.bam 8963611760 BAM genomic harmonized CPTAC3 cc62afe4-5e2b-4679-8ac6-938ae64601ea 642fa0dce1cbd40bd47372209ad68a90 {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.RNA-Seq.S11_L003_R1.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R1_001.fastq.gz 4180201255 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 e13d3f16-43bb-41ef-a12f-1d585b7a3a34 001528a5ca099256977ea2c7b1caa967 {"aliquot_tag": "ALQ_ffc78262", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.RNA-Seq.S11_L003_R2.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R2_001.fastq.gz 4588964294 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 14e4f846-a99b-424d-924e-145b287431cc 5c5a8647a42a2ce052ceb64ce39a491d {"aliquot_tag": "ALQ_ffc78262", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.RNA-Seq.S37_L007_R1.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R1_001.fastq.gz 3663636749 FASTQ S37_L007_R1 submitted_unaligned CPTAC3 ec1d657b-3f62-4542-a797-f0cf12ef9205 cbdf2b9d5cd7bbe28ebe358ab839c94d {"aliquot_tag": "ALQ_794101a6", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.RNA-Seq.S37_L007_R2.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R2_001.fastq.gz 3918725289 FASTQ S37_L007_R2 submitted_unaligned CPTAC3 6139aeb3-a7f2-4dac-9eef-9d74414d59c7 2d11cd684e6f75c6e1ae6d24a8c5cd3b {"aliquot_tag": "ALQ_794101a6", "sample": "S37", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.RNA-Seq.transcriptome.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.transcriptome.gdc_realn.bam 9444279913 BAM transcriptome harmonized CPTAC3 d8322313-8585-4345-954b-0f8bd83bcfc6 4641223cdd2e37071f1b174ec044fe5f {"aliquot_tag": "ALQ_794101a6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.RNA-Seq.transcriptome.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.transcriptome.gdc_realn.bam 12136147588 BAM transcriptome harmonized CPTAC3 3f0c906f-17e4-486b-8b83-fa6827f4246d d7b77526333a7dd332186cdf292a0234 {"aliquot_tag": "ALQ_ffc78262", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.WGS.A C3N-01022 LUAD WGS tissue_normal CPT0117820009 CPT0117820009.WholeGenome.RP-1303.bam 58524086782 BAM submitted_aligned CPTAC3 d18ce70e-c593-4b67-91b5-d2fd6ac678bb 68fc8bc0637368d5b76bdb9b55867222 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.WGS.A.hg38 C3N-01022 LUAD WGS tissue_normal CPT0117820009 9cbde4df-30cf-4aef-97ef-0190d2560088_wgs_gdc_realn.bam 85583028500 BAM harmonized CPTAC3 515e2de9-8103-46f3-bedc-2311709c7ee5 6588565517e2a43231f691486be7b8d6 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.WGS.N C3N-01022 LUAD WGS blood_normal CPT0119030002 CPT0119030002.WholeGenome.RP-1303.bam 64864110739 BAM submitted_aligned CPTAC3 00b529e5-e9a7-47d9-90d3-c1041bb2c29a c42b5ae5a67a429068a849ac5d3ffc1d {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01022.WGS.N.hg38 C3N-01022 LUAD WGS blood_normal CPT0119030002 847f97f0-8f4d-4eec-863c-fc85b03fb427_wgs_gdc_realn.bam 96438850452 BAM harmonized CPTAC3 cf4f0ad2-8535-4f67-92c7-dfb038fa0560 06b3eaa10180b0217bce058e6dc455b3 {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01022.WGS.T C3N-01022 LUAD WGS tumor CPT0117790009 CPT0117790009.WholeGenome.RP-1303.bam 59818417054 BAM submitted_aligned CPTAC3 d65d165d-113c-4ba7-a628-fbc5d71c80b3 3fd17a437e4d2df1bfab33e055c09974 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.WGS.T.hg38 C3N-01022 LUAD WGS tumor CPT0117790009 b7e86b11-9879-4353-b6de-b87af018efdd_wgs_gdc_realn.bam 87486119049 BAM harmonized CPTAC3 e2b39956-e966-4b86-bb1a-c29df2d031c5 9930b33649ce050a59c3d714c8dd40b9 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.WXS.A C3N-01022 LUAD WXS tissue_normal CPT0117820009 CPT0117820009.WholeExome.RP-1303.bam 40284704610 BAM submitted_aligned CPTAC3 5e158896-d22f-49a8-83d9-438e780c8f17 1a8823466a9bae2f67ed6ef7f8fb342b {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.WXS.A.hg38 C3N-01022 LUAD WXS tissue_normal CPT0117820009 9cbde4df-30cf-4aef-97ef-0190d2560088_wxs_gdc_realn.bam 55456331759 BAM harmonized CPTAC3 9edbb702-e019-46ed-a5d9-3d6d47111ca3 d5f5f3c5609096a7db3c5146186061d8 {"aliquot_tag": "ALQ_e9fe1c37", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01022.WXS.N C3N-01022 LUAD WXS blood_normal CPT0119030002 CPT0119030002.WholeExome.RP-1303.bam 41436413161 BAM submitted_aligned CPTAC3 40cab493-888a-4f83-95a8-34f098655625 558544aa9418f404084492001f5a6c0c {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01022.WXS.N.hg38 C3N-01022 LUAD WXS blood_normal CPT0119030002 847f97f0-8f4d-4eec-863c-fc85b03fb427_wxs_gdc_realn.bam 56118013262 BAM harmonized CPTAC3 1fee2414-de0c-498e-9565-1b57bae644a9 c9b14fe11a8d9ee3434ba57ebb576fc6 {"aliquot_tag": "ALQ_ff20153f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01022.WXS.T C3N-01022 LUAD WXS tumor CPT0117790009 CPT0117790009.WholeExome.RP-1303.bam 35932136163 BAM submitted_aligned CPTAC3 d577e1a5-072f-4a67-8a65-7c75dbc08198 af461e7be5a10da00df66aba432d3df0 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01022.WXS.T.hg38 C3N-01022 LUAD WXS tumor CPT0117790009 b7e86b11-9879-4353-b6de-b87af018efdd_wxs_gdc_realn.bam 48201307227 BAM harmonized CPTAC3 9cf0d0e0-3c0a-4394-8c7f-a5bfd8b535a1 b235d10ee781e925b9458c7c85d3c971 {"aliquot_tag": "ALQ_6f789ff3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.MethArray.Green.A C3N-01023 LUAD Methylation_Array tissue_normal CPT0105190009 203027390028_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a32c1b6b-ff59-49de-9724-e97ec79a251e 1106a995ded94be74c917f9c766dbe11 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.MethArray.Green.T C3N-01023 LUAD Methylation_Array tumor CPT0105060009 202234380102_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4100fac4-b9ab-4e43-a0c1-93cbde1b0964 af610c8aa1ed842a6e0cbf19bc0b3f01 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.MethArray.Red.A C3N-01023 LUAD Methylation_Array tissue_normal CPT0105190009 203027390028_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 d8cac26b-9ae5-4b5a-a399-f57c07df0df0 df52af3f12038cb3c674bf9582697236 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.MethArray.Red.T C3N-01023 LUAD Methylation_Array tumor CPT0105060009 202234380102_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 87292705-ce13-48cd-83ca-6160d0e4f0a0 01a1daa8bc67db1836025b513626b32a {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.miRNA-Seq.A.hg38 C3N-01023 LUAD miRNA-Seq tissue_normal CPT0105190006 d6e1a802-9d2b-4b3c-8f1f-942e74ae0c96_mirnaseq_gdc_realn.bam 240085878 BAM harmonized CPTAC3 e49cac6b-d9b3-4895-826d-c6a9318ebf1d 569254628fe084ac2e903b214588dc17 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.miRNA-Seq.S23_L005_R1.T C3N-01023 LUAD miRNA-Seq tumor CPT0105060006 181119_UNC31-K00269_0165_AH27WCBBXY_TCGAAG_S23_L005_R1_001.unaln.bam 197547821 BAM S23_L005_R1 submitted_unaligned CPTAC3 68013eed-bcd2-4e0b-8142-212eb113caa0 a4f9fb6ddbd4e42bab9354532cc6f620 {"aliquot_tag": "ALQ_3ba734bc", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.miRNA-Seq.S38_L008_R1.A C3N-01023 LUAD miRNA-Seq tissue_normal CPT0105190006 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L008_R1_001.unaln.bam 218716852 BAM S38_L008_R1 submitted_unaligned CPTAC3 8b3f6917-546b-43f1-83b4-90735f096d31 d34a05c72da03737e132d106e0914843 {"aliquot_tag": "ALQ_72ab70c8", "sample": "S38", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.miRNA-Seq.T.hg38 C3N-01023 LUAD miRNA-Seq tumor CPT0105060006 f8e84d81-7190-47c0-8639-bbf625e221a4_mirnaseq_gdc_realn.bam 213067762 BAM harmonized CPTAC3 11b0bb6e-72a8-40ce-9ef2-981d4543bb21 983f771de558d455654d16574af9a5cc {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.RNA-Seq.chimeric.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.chimeric.gdc_realn.bam 97444264 BAM chimeric harmonized CPTAC3 74c13c4d-c056-4761-95cf-913913733dcb 796c39ba3c63ceec57d2218261bc0b43 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.RNA-Seq.chimeric.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.chimeric.gdc_realn.bam 35942145 BAM chimeric harmonized CPTAC3 cc6522ed-139d-4225-83b0-b2f4e53001f7 f78df2efaa0fd2805b6506ed898bfbf6 {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.RNA-Seq.genomic.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.genomic.gdc_realn.bam 8989705099 BAM genomic harmonized CPTAC3 400822a1-746e-48e3-875f-c1d022c429bb 92b9bc364eedd829373345c341a400c4 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.RNA-Seq.genomic.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.genomic.gdc_realn.bam 8970092447 BAM genomic harmonized CPTAC3 efe9fea9-bffa-463b-9bcb-e1379ec8121a 8fa5d00cb3a0f8dbc93a9d3cec44978f {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.RNA-Seq.S10_L008_R1.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R1_001.fastq.gz 4245927775 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 68280a88-e5ab-4692-be16-13a8b89ab24c e706ff61d24552c3d8a782be6f790abe {"aliquot_tag": "ALQ_72ab70c8", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.RNA-Seq.S10_L008_R2.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R2_001.fastq.gz 4678324312 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 18ae465e-5ade-4c9e-9d5e-fe5dbd18deb8 cf130249fd13be5b0fc6c3f343215b04 {"aliquot_tag": "ALQ_72ab70c8", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.RNA-Seq.S15_L004_R1.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3885047829 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 58f7c30a-a7cd-44e3-91c6-db892b584c1c 69236b0415391dcc35bf6fb9a21cba74 {"aliquot_tag": "ALQ_3ba734bc", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.RNA-Seq.S15_L004_R2.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4223428891 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 78cdbc02-99e3-4a5e-a7a7-3032a32662e7 98f6ccb53be8c4bd08c324903d8e26f5 {"aliquot_tag": "ALQ_3ba734bc", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.RNA-Seq.transcriptome.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.transcriptome.gdc_realn.bam 9899557127 BAM transcriptome harmonized CPTAC3 beaa4859-510e-4166-b778-7e1d3c00aaa4 79bb9afc44c97d240971701d851de270 {"aliquot_tag": "ALQ_72ab70c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.RNA-Seq.transcriptome.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.transcriptome.gdc_realn.bam 10786475447 BAM transcriptome harmonized CPTAC3 34ad78e8-31dd-4d12-8e34-93e83661ac46 be89d0cbd81f564f87dc31bd1ca92a7c {"aliquot_tag": "ALQ_3ba734bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.WGS.A C3N-01023 LUAD WGS tissue_normal CPT0105190009 CPT0105190009.WholeGenome.RP-1303.bam 49144994370 BAM submitted_aligned CPTAC3 371a3deb-04e1-4dcd-ae9c-c529bc81e396 db7d017bcf2e65e4369f61d900acdd7c {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.WGS.A.hg38 C3N-01023 LUAD WGS tissue_normal CPT0105190009 f52bd70a-0ab5-40d5-8c52-471fe67007c4_wgs_gdc_realn.bam 72395036500 BAM harmonized CPTAC3 ba91bf48-47f3-465d-9f69-b9660e35149d 3efbde6347d76b382ff60cefd803a39f {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.WGS.N C3N-01023 LUAD WGS blood_normal CPT0107620002 CPT0107620002.WholeGenome.RP-1303.bam 77130565560 BAM submitted_aligned CPTAC3 0ae07815-7c45-4931-9811-644078e3ccea 6adef516521c8a4b55663753d0b09fdf {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01023.WGS.N.hg38 C3N-01023 LUAD WGS blood_normal CPT0107620002 6fe094ac-6df4-4439-8fe5-b4478e811ba2_wgs_gdc_realn.bam 114609434920 BAM harmonized CPTAC3 ea1cc5e5-bf38-4299-b85c-af8c57c4dc76 cd2cca9c08e37039d16e96ae80c5b888 {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01023.WGS.T C3N-01023 LUAD WGS tumor CPT0105060009 CPT0105060009.WholeGenome.RP-1303.bam 56203790204 BAM submitted_aligned CPTAC3 79a6054b-4f0a-4417-90b9-1c3cc72fa829 3758d63fbe5162dbd0aeeb8345276893 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.WGS.T.hg38 C3N-01023 LUAD WGS tumor CPT0105060009 f1cb7bcc-d5c8-49fa-a282-7a3d77692341_wgs_gdc_realn.bam 82757871457 BAM harmonized CPTAC3 a28de540-c211-488a-9189-010055881d30 97f892815432d8d1a676c1d1cac108d9 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.WXS.A C3N-01023 LUAD WXS tissue_normal CPT0105190009 CPT0105190009.WholeExome.RP-1303.bam 30131499995 BAM submitted_aligned CPTAC3 a2aa72c4-7302-4204-a218-82019bdb9767 ae6bb0633a2d469fe2ea515624967561 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.WXS.A.hg38 C3N-01023 LUAD WXS tissue_normal CPT0105190009 f52bd70a-0ab5-40d5-8c52-471fe67007c4_wxs_gdc_realn.bam 40736560873 BAM harmonized CPTAC3 8411bed9-2b4d-422c-8484-ac5b37d75445 96ef0e1c01e8e4d5c0805dd000ba1274 {"aliquot_tag": "ALQ_e2146d59", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01023.WXS.N C3N-01023 LUAD WXS blood_normal CPT0107620002 CPT0107620002.WholeExome.RP-1303.bam 25575784912 BAM submitted_aligned CPTAC3 92654762-5f60-47de-a4d6-a151badf2a08 b4fc525a12b263c8fde80871fbe3957e {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01023.WXS.N.hg38 C3N-01023 LUAD WXS blood_normal CPT0107620002 6fe094ac-6df4-4439-8fe5-b4478e811ba2_wxs_gdc_realn.bam 34660210979 BAM harmonized CPTAC3 ea279111-7dee-4109-9eef-1dc0c7c48bc8 28d9de81b670c04070a6de131fe8bc6d {"aliquot_tag": "ALQ_888ca451", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01023.WXS.T C3N-01023 LUAD WXS tumor CPT0105060009 CPT0105060009.WholeExome.RP-1303.bam 34053367287 BAM submitted_aligned CPTAC3 4306a613-33b7-4e18-a475-222172c6847f 590aff2c86d9f16769fbb41354abd48a {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01023.WXS.T.hg38 C3N-01023 LUAD WXS tumor CPT0105060009 f1cb7bcc-d5c8-49fa-a282-7a3d77692341_wxs_gdc_realn.bam 45839232980 BAM harmonized CPTAC3 11ccfeaf-bedc-4a9b-876a-29708e14f98e b3acc8f65ff9c778ed69b08680820679 {"aliquot_tag": "ALQ_ab18292d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.MethArray.Green.A C3N-01024 LUAD Methylation_Array tissue_normal CPT0105250009 203027380028_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 6a50c22c-f2fd-46d6-8ec2-ea577f195671 10da2cebf95208ab38730c240485be32 {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.MethArray.Green.T C3N-01024 LUAD Methylation_Array tumor CPT0105230009 202234360028_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4eb2b479-09a1-4aeb-b55d-f6e1dd9feaa1 fec540f660b6dd6d2db3cf4473a6cb45 {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.MethArray.Red.A C3N-01024 LUAD Methylation_Array tissue_normal CPT0105250009 203027380028_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 10154ff7-9da6-4c57-8435-0665dd9f6bd9 9d8ac5c7be77dce044a2fde868f826ee {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.MethArray.Red.T C3N-01024 LUAD Methylation_Array tumor CPT0105230009 202234360028_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 49c7e9f4-2d4c-443f-a7dd-b00d297adb2d 796b7d4ba06bc0445bc97a4c44280e0b {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.miRNA-Seq.A.hg38 C3N-01024 LUAD miRNA-Seq tissue_normal CPT0105250006 697505be-89e5-4c4a-927a-a4990da47fef_mirnaseq_gdc_realn.bam 255717661 BAM harmonized CPTAC3 1ef18824-9cf6-4c44-b41f-3914f7174343 a8ae7076e4a4ffa749af1ee2d2638927 {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.miRNA-Seq.S11_L007_R1.A C3N-01024 LUAD miRNA-Seq tissue_normal CPT0105250006 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L007_R1_001.unaln.bam 233666891 BAM S11_L007_R1 submitted_unaligned CPTAC3 88413f59-2f60-4d4a-80e9-a9b27285ff75 19b9d136df9f4c02a92adce751aa3b94 {"aliquot_tag": "ALQ_31cfef67", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.miRNA-Seq.S42_L007_R1.T C3N-01024 LUAD miRNA-Seq tumor CPT0105230006 181108_UNC31-K00269_0163_BH23TVBBXY_TAATCG_S42_L007_R1_001.unaln.bam 180552171 BAM S42_L007_R1 submitted_unaligned CPTAC3 2a551037-c6e8-4b98-a021-f69ce98a5f47 193f06b015de8f0d9e98e217e7555761 {"aliquot_tag": "ALQ_be8f1ac7", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.miRNA-Seq.T.hg38 C3N-01024 LUAD miRNA-Seq tumor CPT0105230006 88e30154-0d0d-4080-9490-bbbb28e30c77_mirnaseq_gdc_realn.bam 200927484 BAM harmonized CPTAC3 031eb5f2-52d4-4e86-920f-a56019783f41 98679bb4dc71f81055ead6da99bff339 {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.RNA-Seq.chimeric.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.chimeric.gdc_realn.bam 105230183 BAM chimeric harmonized CPTAC3 0c6a174e-d227-4bf3-8dc5-dcc5373e7a46 65f39eeb56cbd64a9e5c0ba143221bfe {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.RNA-Seq.chimeric.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.chimeric.gdc_realn.bam 29686870 BAM chimeric harmonized CPTAC3 b3b3fc80-bd1c-44fa-9e45-221c7f3cf933 63eb3f7c98444771d68ae22de4d8d603 {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.RNA-Seq.genomic.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.genomic.gdc_realn.bam 8852890117 BAM genomic harmonized CPTAC3 7bfd253a-7db8-4122-ad31-eda5eabe7e10 6867be8601306d0fba3a7e868526db90 {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.RNA-Seq.genomic.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.genomic.gdc_realn.bam 7103899485 BAM genomic harmonized CPTAC3 285129a7-0907-4bad-88a5-660903dea37e 69c43dfcfb13d0062a064e5235c401fd {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.RNA-Seq.S23_L006_R1.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R1_001.fastq.gz 3212271695 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 565bbf90-d360-4748-93bf-0a41eb61a124 e7bfaa49815f2d47536c33a63dd74c2e {"aliquot_tag": "ALQ_be8f1ac7", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.RNA-Seq.S23_L006_R2.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R2_001.fastq.gz 3560629296 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 608825d7-23ea-412a-a3ea-00a6372965ea 0c205a67311d2b51c576a8e17737b3a2 {"aliquot_tag": "ALQ_be8f1ac7", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.RNA-Seq.S9_L003_R1.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 4130779187 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 d3fd7b33-e340-4f70-a6df-b7be7251f916 bd9a5893f2f379856d72af0bf51b06bb {"aliquot_tag": "ALQ_31cfef67", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.RNA-Seq.S9_L003_R2.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 4809377296 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 d39ad31f-6a7e-41b0-96c5-93194af85f8a 737830aa5bb9c1aca719aeb5a4c21c8b {"aliquot_tag": "ALQ_31cfef67", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.RNA-Seq.transcriptome.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.transcriptome.gdc_realn.bam 10387747052 BAM transcriptome harmonized CPTAC3 20c64422-ffcc-462e-a03b-7caeb3503ce9 7a18ced81f20099200d7087fc0c00ce0 {"aliquot_tag": "ALQ_31cfef67", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.RNA-Seq.transcriptome.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.transcriptome.gdc_realn.bam 10425646942 BAM transcriptome harmonized CPTAC3 dae77f1f-ce71-4b3f-9cda-479beaff9e2f c05d4670f042e77f09245fbfae6346db {"aliquot_tag": "ALQ_be8f1ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.WGS.A C3N-01024 LUAD WGS tissue_normal CPT0105250009 CPT0105250009.WholeGenome.RP-1303.bam 75004313727 BAM submitted_aligned CPTAC3 ca822649-3568-4809-8176-bc9d9e14c89b a595854ab5437a4e18eed3a0d187ea17 {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.WGS.A.hg38 C3N-01024 LUAD WGS tissue_normal CPT0105250009 b5e049c4-a147-488f-8545-70c5ade90d94_wgs_gdc_realn.bam 109407714464 BAM harmonized CPTAC3 feb04b17-09ba-4698-9198-047c3d2a6831 5c6bd55e32f4f2095575698f258bcbea {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.WGS.N C3N-01024 LUAD WGS blood_normal CPT0107680002 CPT0107680002.WholeGenome.RP-1303.bam 60749597812 BAM submitted_aligned CPTAC3 59b824c6-f52e-4bef-ae1e-7b2aa2e02773 ba96503e9126109bdfcb520299433ac6 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01024.WGS.N.hg38 C3N-01024 LUAD WGS blood_normal CPT0107680002 56936176-1fa4-4fab-8558-c250f52613e2_wgs_gdc_realn.bam 90661453856 BAM harmonized CPTAC3 96403b4d-7d4d-4740-9cf9-2c544882f6a5 b8a7148209217c974c69bbef9e4220b4 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01024.WGS.T C3N-01024 LUAD WGS tumor CPT0105230009 CPT0105230009.WholeGenome.RP-1303.bam 71417335975 BAM submitted_aligned CPTAC3 c607cf03-179c-4d3b-b6fa-b5339e5ff377 bea00a2f378600257e55baa71092eb3e {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.WGS.T.hg38 C3N-01024 LUAD WGS tumor CPT0105230009 b054d196-6194-469f-aa49-62037b18d803_wgs_gdc_realn.bam 105547429040 BAM harmonized CPTAC3 75c882b4-a172-4412-aa44-26df17479645 7763be4aef8003be0bdbbe3d9c03c557 {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.WXS.A C3N-01024 LUAD WXS tissue_normal CPT0105250009 CPT0105250009.WholeExome.RP-1303.bam 26628368083 BAM submitted_aligned CPTAC3 3212e587-1b50-426d-a7dc-39a075116f07 027be7201381333a51826b63975e4b71 {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.WXS.A.hg38 C3N-01024 LUAD WXS tissue_normal CPT0105250009 b5e049c4-a147-488f-8545-70c5ade90d94_wxs_gdc_realn.bam 36362860228 BAM harmonized CPTAC3 763dce08-6661-42b5-baf6-4ba4e87a6f44 5104f002bdef8938933c74608c75b6ae {"aliquot_tag": "ALQ_a170f2f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01024.WXS.N C3N-01024 LUAD WXS blood_normal CPT0107680002 CPT0107680002.WholeExome.RP-1303.bam 31218214289 BAM submitted_aligned CPTAC3 a5e7183c-4d75-455f-bfeb-8c5209a9e1eb 8fc17fee6d98b19f03b1aa045796e817 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01024.WXS.N.hg38 C3N-01024 LUAD WXS blood_normal CPT0107680002 56936176-1fa4-4fab-8558-c250f52613e2_wxs_gdc_realn.bam 40956944679 BAM harmonized CPTAC3 04a3af93-4f72-430b-9c69-6b67fd8ccd24 965362761668207a4ff509a59cbb9868 {"aliquot_tag": "ALQ_c23cbcf0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01024.WXS.T C3N-01024 LUAD WXS tumor CPT0105230009 CPT0105230009.WholeExome.RP-1303.bam 39455899446 BAM submitted_aligned CPTAC3 5f26bb97-142d-4686-afaa-f3747977ec0e 9c698c0fba7a29b0629349a47c7d305f {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01024.WXS.T.hg38 C3N-01024 LUAD WXS tumor CPT0105230009 b054d196-6194-469f-aa49-62037b18d803_wxs_gdc_realn.bam 53574144778 BAM harmonized CPTAC3 917300e1-0d7e-4d09-80a5-65672f9f2abd 4cc7f63bd5e793823b8807a67a9c6fbc {"aliquot_tag": "ALQ_2e300756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.MethArray.Green.A C3N-01025 LSCC Methylation_Array tissue_normal CPT0083990006 203219640133_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 108e8ab3-fed2-4838-9d66-70c39001eac6 e81effe7e474b3a1a1d0c6815ad72440 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.MethArray.Green.T C3N-01025 LSCC Methylation_Array tumor CPT0083980006 202184900105_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 701898ce-f5cf-4fc0-b4fc-0deaea04e3e5 7b3c8a54232e380c1a03da46e690e851 {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.MethArray.Red.A C3N-01025 LSCC Methylation_Array tissue_normal CPT0083990006 203219640133_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 2cb5f0b1-7fac-47de-9eab-7058cc3fa4c1 41fbe73d460b7c78deedcf23ca827ad5 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.MethArray.Red.T C3N-01025 LSCC Methylation_Array tumor CPT0083980006 202184900105_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 1a76a9e7-6e13-43d9-a0a4-6f06755fe307 333dfdcc2d1bf2dd13203239cb88bb22 {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.miRNA-Seq.A.hg38 C3N-01025 LSCC miRNA-Seq tissue_normal CPT0083990009 cd506a81-3738-4da6-968b-8630fe5f1279_mirnaseq_gdc_realn.bam 212948639 BAM harmonized CPTAC3 6249dab8-043a-4e1e-b50c-91b7b026745e e51e35181ee2bcd060944e5dce800014 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.miRNA-Seq.S2_L005_R1.A C3N-01025 LSCC miRNA-Seq tissue_normal CPT0083990009 181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L005_R1_001.unaln.bam 191375612 BAM S2_L005_R1 submitted_unaligned CPTAC3 3b62aadb-d041-4e05-aa9c-9cc74e742411 3190a1a19d07a5f40e22254beb141f2c {"aliquot_tag": "ALQ_a909d5f8", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.miRNA-Seq.S7_L006_R1.T C3N-01025 LSCC miRNA-Seq tumor CPT0083980009 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L006_R1_001.unaln.bam 176643437 BAM S7_L006_R1 submitted_unaligned CPTAC3 5baa3e69-1721-4ab6-8b70-8e2c30c7aa52 898c3916098cae64e9ffb668da153efc {"aliquot_tag": "ALQ_9469fc48", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.miRNA-Seq.T.hg38 C3N-01025 LSCC miRNA-Seq tumor CPT0083980009 2f551df5-c3a7-4879-afa2-b8c8af9629fa_mirnaseq_gdc_realn.bam 210033614 BAM harmonized CPTAC3 a7a8b5ce-ffaf-45d3-ae6f-3dbc6fdd69a9 4281001206bac01e7be79a111f74c07d {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.RNA-Seq.chimeric.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.chimeric.gdc_realn.bam 42116847 BAM chimeric harmonized CPTAC3 37f1a33f-f78a-4335-9208-3520510136e9 0200418308a6de8801d26d1f9dfcd242 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.RNA-Seq.chimeric.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.chimeric.gdc_realn.bam 65333724 BAM chimeric harmonized CPTAC3 cdb9cf90-7633-4b59-9c6e-4aeb938b3237 6885c9ba643bb1a050a6782ff6863df0 {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.RNA-Seq.genomic.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.genomic.gdc_realn.bam 10596154368 BAM genomic harmonized CPTAC3 a6d2f656-0c01-43ea-98d2-1f529fe39c3e 80593f31acac505c6e9aa66fa87cf977 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.RNA-Seq.genomic.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.genomic.gdc_realn.bam 11404033090 BAM genomic harmonized CPTAC3 6156be8c-fd6c-42d2-a1e7-b68e1b23d18f 118a5456f0c6914e0aabc304c600f04b {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.RNA-Seq.S2_L001_R1.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4760584148 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 0396eebf-431f-4be8-b767-d8715f81ac22 7102ab7bc12345060b9b4edf03ed8124 {"aliquot_tag": "ALQ_a909d5f8", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.RNA-Seq.S2_L001_R2.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R2_001.fastq.gz 5159080379 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 52a5f78a-ac2f-4387-9076-f596f043c6a0 b9490fb90fd88c2325bcb2fbe651cbe1 {"aliquot_tag": "ALQ_a909d5f8", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.RNA-Seq.S2_L007_R1.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4858337206 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 ee7ae4a3-09d2-41a2-8555-0415eadd7af2 b15774f57495a05d4bd2229533512792 {"aliquot_tag": "ALQ_9469fc48", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.RNA-Seq.S2_L007_R2.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5289739765 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 fd4cf698-cdd1-4357-a78f-2f8d0136009f eb31721e329ea1bf82a4ac017c143f45 {"aliquot_tag": "ALQ_9469fc48", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.RNA-Seq.transcriptome.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.transcriptome.gdc_realn.bam 12738618653 BAM transcriptome harmonized CPTAC3 b2deb791-9a5a-47bc-9858-5ae717a0ca74 48563d27a2b03d1f47fb19428e7a8095 {"aliquot_tag": "ALQ_a909d5f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.RNA-Seq.transcriptome.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.transcriptome.gdc_realn.bam 12721550872 BAM transcriptome harmonized CPTAC3 3c9f0693-5be1-4b06-8bbb-cbe832f11a94 f769c907f99c3a2e0608447366b0d264 {"aliquot_tag": "ALQ_9469fc48", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.WGS.A C3N-01025 LSCC WGS tissue_normal CPT0083990006 CPT0083990006.WholeGenome.RP-1303.bam 58363367476 BAM submitted_aligned CPTAC3 ee83c0dd-5f93-443b-a234-b17d3835740c 4f2416b0a848a28021dfe18cd65e6054 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.WGS.A.hg38 C3N-01025 LSCC WGS tissue_normal CPT0083990006 8fec352a-9f29-4192-9cf7-4e168121d65a_wgs_gdc_realn.bam 85351032567 BAM harmonized CPTAC3 e852138c-e1c8-423e-8908-3ab8029a7dd4 90478ea28c706311d81ed3370cd990e4 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.WGS.N C3N-01025 LSCC WGS blood_normal CPT0084010002 CPT0084010002.WholeGenome.RP-1303.bam 71056926666 BAM submitted_aligned CPTAC3 77d587f5-556c-4c33-9171-f3cd9398f7d0 448bfa966e936231592a883891a09c0b {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01025.WGS.N.hg38 C3N-01025 LSCC WGS blood_normal CPT0084010002 deaf3afa-6124-4a78-963e-99548e4a01e7_gdc_realn.bam 106684041857 BAM harmonized CPTAC3 2aa47188-a36b-436f-9fa8-38fa65d43168 f35a65b938dc2d58e3d6f501562e759c {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01025.WGS.T C3N-01025 LSCC WGS tumor CPT0083980006 CPT0083980006.WholeGenome.RP-1303.bam 63804076143 BAM submitted_aligned CPTAC3 711a495a-5a1c-4810-b862-b135dff6f3a0 d8591da596783c725531059dad77bed9 {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.WGS.T.hg38 C3N-01025 LSCC WGS tumor CPT0083980006 ec4f4827-a41c-44ff-b5d8-dfaa16db54a3_gdc_realn.bam 97633619562 BAM harmonized CPTAC3 235fdf79-7fc1-4173-82dc-406ef59a9f31 cf345eca418640d21098f332be6bb73e {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.WXS.A C3N-01025 LSCC WXS tissue_normal CPT0083990006 CPT0083990006.WholeExome.RP-1303.bam 25842968018 BAM submitted_aligned CPTAC3 b6c375f0-0e7c-43ca-984d-fb6983d5ba8f 4aba9511ca7b4142457d8de8ad2e80c8 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.WXS.A.hg38 C3N-01025 LSCC WXS tissue_normal CPT0083990006 8fec352a-9f29-4192-9cf7-4e168121d65a_wxs_gdc_realn.bam 35272404645 BAM harmonized CPTAC3 7dff52b7-6d06-4c47-bb09-551496226f51 9cbb3ab55a2c00c313d823642c4ca123 {"aliquot_tag": "ALQ_39b6c869", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01025.WXS.N C3N-01025 LSCC WXS blood_normal CPT0084010002 CPT0084010002.WholeExome.RP-1303.bam 27659768215 BAM submitted_aligned CPTAC3 39c24a02-32ed-4879-b1cc-d280eeeb616e c39c3133fe829a21191042f36464b6a2 {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01025.WXS.N.hg38 C3N-01025 LSCC WXS blood_normal CPT0084010002 deaf3afa-6124-4a78-963e-99548e4a01e7_gdc_realn.bam 37319544478 BAM harmonized CPTAC3 70c998a7-7458-4e01-b2f9-d6f11ff36c7c 6e605da78c8257b6097fa71c256d04f4 {"aliquot_tag": "ALQ_ec0328f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01025.WXS.T C3N-01025 LSCC WXS tumor CPT0083980006 CPT0083980006.WholeExome.RP-1303.bam 31199790143 BAM submitted_aligned CPTAC3 6f944b50-8588-46ae-8562-6da85943cd0a 210fbf69fb6fb9c11e393e9d3c36b93e {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01025.WXS.T.hg38 C3N-01025 LSCC WXS tumor CPT0083980006 ec4f4827-a41c-44ff-b5d8-dfaa16db54a3_gdc_realn.bam 43244656893 BAM harmonized CPTAC3 b90e9e68-b77d-4b34-b30b-67f097fd6fca 07ef4fd5c4b3b16929346b9f3b61df8b {"aliquot_tag": "ALQ_4d6e1d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.MethArray.Green.A C3N-01028 LSCC Methylation_Array tissue_normal CPT0091090006 203219670147_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 8f6ad34c-17e3-47b2-ac87-7f4acedbff3e 1a25c9f487ffdce79689713315ee582b {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.MethArray.Green.T C3N-01028 LSCC Methylation_Array tumor CPT0091050009 202234370093_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b2e1cd09-a389-4d2e-8345-38117c14c1d4 2c42c8228a49a92cbbaead2ac9667a7e {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.MethArray.Red.A C3N-01028 LSCC Methylation_Array tissue_normal CPT0091090006 203219670147_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 92483232-4bdd-4837-9377-c82c6d901128 b7a95374bb08780bd38c12ac35d6a309 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.MethArray.Red.T C3N-01028 LSCC Methylation_Array tumor CPT0091050009 202234370093_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 0f24c0fd-9c09-4d0b-b600-13ce9b5270fb 1dbe6b160a264d5fffec0be077c36956 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.miRNA-Seq.A.hg38 C3N-01028 LSCC miRNA-Seq tissue_normal CPT0091090009 e79b4a6e-1604-4756-bfd7-84ad84ac65c4_mirnaseq_gdc_realn.bam 293520161 BAM harmonized CPTAC3 d94a7955-d8a6-40df-b2a1-290d09cafae9 400108aa890eba2ef69ede3e3bf8b5d1 {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.miRNA-Seq.S20_L006_R1.T C3N-01028 LSCC miRNA-Seq tumor CPT0091050006 180828_UNC32-K00270_0112_AHWTLNBBXX_TGACCA_S20_L006_R1_001.unaln.bam 230518542 BAM S20_L006_R1 submitted_unaligned CPTAC3 ad65ea8c-b5df-4a40-ad8c-726f609a6d60 042b46ec85361cfe60424c6bc00935a6 {"aliquot_tag": "ALQ_807c6517", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.miRNA-Seq.S3_L005_R1.A C3N-01028 LSCC miRNA-Seq tissue_normal CPT0091090009 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L005_R1_001.unaln.bam 264014990 BAM S3_L005_R1 submitted_unaligned CPTAC3 ab67918c-eb98-4d15-ae3a-d0113cd720fd 7c8d91295743a146f199083f463aafc7 {"aliquot_tag": "ALQ_d5339587", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.miRNA-Seq.T.hg38 C3N-01028 LSCC miRNA-Seq tumor CPT0091050006 1c39917c-8cc6-4028-a5b2-d182f30a3ca4_mirnaseq_gdc_realn.bam 259252872 BAM harmonized CPTAC3 dad8b3ff-1a81-4726-83cf-7fa1942eefad 5176b088f9bf37cfa534d7bda702c9d1 {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.RNA-Seq.chimeric.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.chimeric.gdc_realn.bam 40889093 BAM chimeric harmonized CPTAC3 e55fb1aa-d383-4e23-86fb-03aadec65fca 1af348d2c6bbfa5184ca9eafa220570f {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.RNA-Seq.chimeric.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.chimeric.gdc_realn.bam 29698113 BAM chimeric harmonized CPTAC3 21d7c722-e7d5-4daa-9b4c-ef8537afb40c 679020d8e78463f12a34c1c487d1da9a {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.RNA-Seq.genomic.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.genomic.gdc_realn.bam 9237356884 BAM genomic harmonized CPTAC3 7e5a8543-563f-4ad3-b521-9ae64a215645 9c6db449503aa4ca0d1a3663f7f4b979 {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.RNA-Seq.genomic.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.genomic.gdc_realn.bam 10702132282 BAM genomic harmonized CPTAC3 7e270fba-2d86-48c1-84a0-c8849a9d8604 524dbf8f2b488841bbb07596af23c11a {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.RNA-Seq.S1_L001_R1.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3868800621 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 5da5910a-3545-4146-8fa5-625bfacc736a 18880e410c0d1c5af5f090c022c734e7 {"aliquot_tag": "ALQ_d5339587", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.RNA-Seq.S1_L001_R2.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 4234376345 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 2103d5b9-3aa9-4c57-9b3c-d9f48ae67da2 9eb02ab2054671794ec1a33e5318c0e3 {"aliquot_tag": "ALQ_d5339587", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.RNA-Seq.S7_L002_R1.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4241044740 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 0e502f4f-7c06-4620-a27c-93040e07ff92 08f0247aac775e11cf0296b2e8abb427 {"aliquot_tag": "ALQ_807c6517", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.RNA-Seq.S7_L002_R2.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4473351267 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 4d3156ee-bf4f-45ba-a0bb-d2b8d5433a22 c8f8559c2041b57a11125b85ef8b6217 {"aliquot_tag": "ALQ_807c6517", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.RNA-Seq.transcriptome.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.transcriptome.gdc_realn.bam 10261765619 BAM transcriptome harmonized CPTAC3 cc75d01f-462c-484b-b5e9-76730ce7fdb4 73a6148bdf7450051094b8ecf2232b24 {"aliquot_tag": "ALQ_d5339587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.RNA-Seq.transcriptome.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.transcriptome.gdc_realn.bam 10505912014 BAM transcriptome harmonized CPTAC3 dc7b35a0-e536-495c-8b09-9fb4c1f11b9a b3a21280f5201c3e87065516d27dd7f3 {"aliquot_tag": "ALQ_807c6517", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.WGS.A C3N-01028 LSCC WGS tissue_normal CPT0091090006 CPT0091090006.WholeGenome.RP-1303.bam 56268354201 BAM submitted_aligned CPTAC3 be93eb8e-59f1-45fe-b313-b1fb8ab5aefe e54c827b956d54010a057ef4e67e77b5 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.WGS.A.hg38 C3N-01028 LSCC WGS tissue_normal CPT0091090006 559f5fdf-bd53-4226-8288-4cf99d291e00_wgs_gdc_realn.bam 82457230957 BAM harmonized CPTAC3 1f7b1e37-c50a-42a8-9ed0-8f387389e9e9 ac04aa0325de643ef91110b6264a25ab {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.WGS.N C3N-01028 LSCC WGS blood_normal CPT0091160002 CPT0091160002.WholeGenome.RP-1303.bam 60353648122 BAM submitted_aligned CPTAC3 79c5faa5-ad20-424d-ade0-7213b07d0e7d 838374553ff23c50d34af8b088d42191 {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01028.WGS.N.hg38 C3N-01028 LSCC WGS blood_normal CPT0091160002 b5b5f651-2f29-457b-b99c-9b08ba7238da_wgs_gdc_realn.bam 89663607689 BAM harmonized CPTAC3 ea1eecac-2f2c-4e5a-9b16-d3b0d7c8a7e6 dd94516008bcc899490398df01d9c5a2 {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01028.WGS.T C3N-01028 LSCC WGS tumor CPT0091050009 CPT0091050009.WholeGenome.RP-1303.bam 60565689828 BAM submitted_aligned CPTAC3 e66ca1e0-ace3-4cb7-bbf6-d7dfefe2d11d 76de3494d336a436bafafa2093c0f4a0 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.WGS.T.hg38 C3N-01028 LSCC WGS tumor CPT0091050009 5447f151-e584-4e44-97c2-781182eb562a_wgs_gdc_realn.bam 89430487483 BAM harmonized CPTAC3 ddf4d672-37ad-4652-ad3d-299170bcbd9e b5c782512506532e5e87cf51760697f2 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.WXS.A C3N-01028 LSCC WXS tissue_normal CPT0091090006 CPT0091090006.WholeExome.RP-1303.bam 30815278914 BAM submitted_aligned CPTAC3 437c66b3-a513-432a-9616-4aea42b06b48 96248a837a06723f1acee844e03bbc18 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.WXS.A.hg38 C3N-01028 LSCC WXS tissue_normal CPT0091090006 559f5fdf-bd53-4226-8288-4cf99d291e00_wxs_gdc_realn.bam 41290980391 BAM harmonized CPTAC3 ae20979a-153b-4f5e-a329-93f7e0688429 021904cca6c58da96d72ce19ae00a674 {"aliquot_tag": "ALQ_458c8816", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01028.WXS.N C3N-01028 LSCC WXS blood_normal CPT0091160002 CPT0091160002.WholeExome.RP-1303.bam 33839672386 BAM submitted_aligned CPTAC3 a2392265-34b6-4e17-88b1-c1af873f8774 9f1272f2e078daede32123897cfa68f1 {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01028.WXS.N.hg38 C3N-01028 LSCC WXS blood_normal CPT0091160002 b5b5f651-2f29-457b-b99c-9b08ba7238da_wxs_gdc_realn.bam 44712262207 BAM harmonized CPTAC3 d72971a0-0f9c-4978-aeaf-441aa81fc4a5 5f0b19cb4ef82ea2a69793330d9457df {"aliquot_tag": "ALQ_bed087b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01028.WXS.T C3N-01028 LSCC WXS tumor CPT0091050009 CPT0091050009.WholeExome.RP-1303.bam 40842277733 BAM submitted_aligned CPTAC3 296971d2-12c1-47ae-bf5e-8d91d60dd635 c2b2099377602982f32fb25adc0489f3 {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01028.WXS.T.hg38 C3N-01028 LSCC WXS tumor CPT0091050009 5447f151-e584-4e44-97c2-781182eb562a_wxs_gdc_realn.bam 55407991570 BAM harmonized CPTAC3 c77c4468-8abe-4c08-b6ce-ee23313abc6e 9d183b6d8f02a6abb9cc2dfc7b79291b {"aliquot_tag": "ALQ_10c37886", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.MethArray.Green.A C3N-01030 LUAD Methylation_Array tissue_normal CPT0091260008 203028200101_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 fce28921-e7f7-42df-9a56-ea9f698b7a9f a9476239d2e67bd9bc27feec59e4de9c {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.MethArray.Green.T C3N-01030 LUAD Methylation_Array tumor CPT0091240009 202234370119_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cfad7cae-00b8-4745-a228-4126a610fcf1 de1c43bf11266e19b048f086b231f4dc {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.MethArray.Red.A C3N-01030 LUAD Methylation_Array tissue_normal CPT0091260008 203028200101_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 d95b5631-d6ff-4704-8a9d-c44928e7717c fcd39f8b0d64bb01e3f78b2cdd158b9e {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.MethArray.Red.T C3N-01030 LUAD Methylation_Array tumor CPT0091240009 202234370119_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 8b0cb1d4-88eb-44ce-bc62-07241b75ea89 c59104429290b1789fbca93b30097fa2 {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.miRNA-Seq.A.hg38 C3N-01030 LUAD miRNA-Seq tissue_normal CPT0091260005 78ca17b3-d543-4e88-a846-bf1ad802318f_mirnaseq_gdc_realn.bam 327191548 BAM harmonized CPTAC3 263a6702-b52e-4676-be96-f754db2a5ee2 f16be94550d8d12a2ba0c7c2a7916d4a {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.miRNA-Seq.S17_L007_R1.A C3N-01030 LUAD miRNA-Seq tissue_normal CPT0091260005 181108_UNC31-K00269_0162_AH255GBBXY_GACGAC_S17_L007_R1_001.unaln.bam 301266718 BAM S17_L007_R1 submitted_unaligned CPTAC3 3204534e-e2a2-4bb7-a9d4-58c8eb5daf21 6b10667f987540568d42b49150acae4e {"aliquot_tag": "ALQ_131def76", "sample": "S17", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.miRNA-Seq.S19_L006_R1.T C3N-01030 LUAD miRNA-Seq tumor CPT0091240006 180828_UNC32-K00270_0112_AHWTLNBBXX_ACAGTG_S19_L006_R1_001.unaln.bam 241300830 BAM S19_L006_R1 submitted_unaligned CPTAC3 bb2b2a4c-c778-49e5-b7b3-8998bf738fe8 d44870da90881914bb5873adefd242e3 {"aliquot_tag": "ALQ_f0d4edac", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.miRNA-Seq.T.hg38 C3N-01030 LUAD miRNA-Seq tumor CPT0091240006 f0d170a6-dc9d-4334-8a34-3c0ec44fd359_mirnaseq_gdc_realn.bam 266044511 BAM harmonized CPTAC3 ae3424ab-15ba-45b0-bb20-ea1b43e73ebf 44a08955a3b38b84b8dc49e8218cdd43 {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.RNA-Seq.chimeric.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.chimeric.gdc_realn.bam 50224722 BAM chimeric harmonized CPTAC3 c3a2f456-2850-4133-bde5-3990b92a5170 1c332886e8f79203e083edb2d7ea5ed2 {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.RNA-Seq.chimeric.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.chimeric.gdc_realn.bam 44025327 BAM chimeric harmonized CPTAC3 b31912e7-eb1b-4d2e-b518-0d61fba86a99 5af80a42629cc0540f5c1b455bbb9b89 {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.RNA-Seq.genomic.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.genomic.gdc_realn.bam 8295755699 BAM genomic harmonized CPTAC3 2d8f4280-3bf6-4c9e-873e-230d5a127cf5 b959f73a06b6a2b37c027eaa90a86477 {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.RNA-Seq.genomic.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.genomic.gdc_realn.bam 9676221765 BAM genomic harmonized CPTAC3 805ca5c6-6092-42b6-9456-5ff271432f94 15f6fdc36bdf1a03e1e28896b335ae3a {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.RNA-Seq.S3_L001_R1.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4273563787 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 c8302fca-0062-44b5-b3ee-0f8a13bfa37f 821a3bbaf2955cfa148da3fa8491b5bb {"aliquot_tag": "ALQ_f0d4edac", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.RNA-Seq.S3_L001_R2.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4854534681 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 1ec23d45-d1f7-4de2-9539-89461d39955f cbe9bcda8349cd48c43d9325991e6cce {"aliquot_tag": "ALQ_f0d4edac", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.RNA-Seq.S6_L002_R1.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R1_001.fastq.gz 3916142213 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 589a0efa-cfe9-4320-957e-85719240f692 3a6316d1c94d6ec7fba99ba8c2ac0eee {"aliquot_tag": "ALQ_131def76", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.RNA-Seq.S6_L002_R2.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R2_001.fastq.gz 4255217192 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 7d6d2c3b-d118-4fab-bc54-54ad4136d5ca 2540b8b88dffaa1758d39b72f3d80d95 {"aliquot_tag": "ALQ_131def76", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.RNA-Seq.transcriptome.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.transcriptome.gdc_realn.bam 10092418817 BAM transcriptome harmonized CPTAC3 71450099-da36-4d65-8a0b-8b39f942af13 cd52dfddbe050133f73c682b9fa1109c {"aliquot_tag": "ALQ_131def76", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.RNA-Seq.transcriptome.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.transcriptome.gdc_realn.bam 11629159377 BAM transcriptome harmonized CPTAC3 7937eb71-9efc-4675-88d1-00eb8be0721b fd071adb0321d766d8bee43a3672d56f {"aliquot_tag": "ALQ_f0d4edac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.WGS.A C3N-01030 LUAD WGS tissue_normal CPT0091260008 CPT0091260008.WholeGenome.RP-1303.bam 53384056860 BAM submitted_aligned CPTAC3 abf466c9-a2c2-4425-9c70-4dc7c1529fbe 6aa0fa5218301a6f793730763fb96e57 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.WGS.A.hg38 C3N-01030 LUAD WGS tissue_normal CPT0091260008 b8952bf8-d01a-4ea8-bb07-957e3cc6fd55_wgs_gdc_realn.bam 77520063993 BAM harmonized CPTAC3 4b6c4724-11db-44b3-94df-39520177da76 7317f16985a05223aa7e812b92ec6f14 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.WGS.N C3N-01030 LUAD WGS blood_normal CPT0091500002 CPT0091500002.WholeGenome.RP-1303.bam 67386461111 BAM submitted_aligned CPTAC3 3167a74c-9ec2-439e-a2fa-f4ab6a25c207 74f2435a4a55ba0821a803227393a712 {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01030.WGS.N.hg38 C3N-01030 LUAD WGS blood_normal CPT0091500002 8e390124-ff80-417f-b8c3-a611f6e4fcbe_wgs_gdc_realn.bam 99833243257 BAM harmonized CPTAC3 7772f460-5f6f-4696-ac37-33d05f47a1ae 8479dbe7f56323474a7c73dc416b57cb {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01030.WGS.T C3N-01030 LUAD WGS tumor CPT0091240009 CPT0091240009.WholeGenome.RP-1303.bam 60271970182 BAM submitted_aligned CPTAC3 1f86f25c-f8c0-42f0-b2a0-3a41f5a2ed3a c643d1c4ee0b28b5d61fbbc3649ea47c {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.WGS.T.hg38 C3N-01030 LUAD WGS tumor CPT0091240009 d75c8fba-a99e-4930-b9fe-514d1e6db377_wgs_gdc_realn.bam 88048291874 BAM harmonized CPTAC3 3051cae9-adf3-4350-a963-6e9a108e22a9 d08b7d0e7f06c35286b20c84f22a9c80 {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.WXS.A C3N-01030 LUAD WXS tissue_normal CPT0091260008 CPT0091260008.WholeExome.RP-1303.bam 29693549222 BAM submitted_aligned CPTAC3 ca51828b-e584-4be6-a505-5f6acb91f280 052dfec3d984eeda15ee25061a881961 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.WXS.A.hg38 C3N-01030 LUAD WXS tissue_normal CPT0091260008 b8952bf8-d01a-4ea8-bb07-957e3cc6fd55_wxs_gdc_realn.bam 40791022357 BAM harmonized CPTAC3 f9c42796-05c9-4a06-b767-7636f148387a 7216fdc5494d3912be7dd583107fe0e5 {"aliquot_tag": "ALQ_6dac93cb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01030.WXS.N C3N-01030 LUAD WXS blood_normal CPT0091500002 CPT0091500002.WholeExome.RP-1303.bam 27165213033 BAM submitted_aligned CPTAC3 54a1e77a-61bd-40e7-bfbb-6b69b9281e33 24a5d4e1fa0650db967c9a85721cd6bf {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01030.WXS.N.hg38 C3N-01030 LUAD WXS blood_normal CPT0091500002 8e390124-ff80-417f-b8c3-a611f6e4fcbe_wxs_gdc_realn.bam 35423496965 BAM harmonized CPTAC3 3f1ca67d-07df-4c01-a671-0f19f5742dc1 657d240882d1853bc55013b048832e69 {"aliquot_tag": "ALQ_1f3cbfcd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01030.WXS.T C3N-01030 LUAD WXS tumor CPT0091240009 CPT0091240009.WholeExome.RP-1303.bam 27967561160 BAM submitted_aligned CPTAC3 f55b89e4-e87d-47ff-8394-75ed0286d87f fe2571f25f9603ef4767b5a43a7b7a65 {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01030.WXS.T.hg38 C3N-01030 LUAD WXS tumor CPT0091240009 d75c8fba-a99e-4930-b9fe-514d1e6db377_wxs_gdc_realn.bam 38477441184 BAM harmonized CPTAC3 51279e23-b65d-43ee-a12f-f4ce44f3a8c4 2b1c245fa5bd8f6f4548ab397153b51c {"aliquot_tag": "ALQ_606bf03d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.MethArray.Green.A C3N-01071 LUAD Methylation_Array tissue_normal CPT0070080009 203028200093_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 415eed32-5098-4e13-bf31-319c1d227151 84bf62f81a88b80cbcdcf9ce94e54a5b {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.MethArray.Green.T C3N-01071 LUAD Methylation_Array tumor CPT0070060006 202178770143_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 0641cc18-43ca-46eb-9bd3-a748dbab8a97 fb6de534229641825e41ffdb73fa1696 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.MethArray.Red.A C3N-01071 LUAD Methylation_Array tissue_normal CPT0070080009 203028200093_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 d1be892a-a064-40ab-b0bf-01e22e6a872c 8a45835d2d4890286bf015f3956a520b {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.MethArray.Red.T C3N-01071 LUAD Methylation_Array tumor CPT0070060006 202178770143_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 e5a4d3b6-04be-4724-b369-e722d9f1c4a8 034fc2f7f0bf9d11f9653cc482828d58 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.miRNA-Seq.A.hg38 C3N-01071 LUAD miRNA-Seq tissue_normal CPT0070080006 f159d093-0679-4d9f-ac10-f734d7fce5dd_mirnaseq_gdc_realn.bam 281883583 BAM harmonized CPTAC3 0c2ec088-2e17-4692-8567-be163f7f3b4d 8aad81f026bfe2fa78e5db8a665df29c {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.miRNA-Seq.S3_L005_R1.T C3N-01071 LUAD miRNA-Seq tumor CPT0070060009 181119_UNC31-K00269_0165_AH27WCBBXY_ATTCCT_S3_L005_R1_001.unaln.bam 233800403 BAM S3_L005_R1 submitted_unaligned CPTAC3 1eb3552d-bd1a-480e-aeff-a30478df1660 b2f52397dee4b30f5c72b70504a6c503 {"aliquot_tag": "ALQ_e49e1bd0", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.miRNA-Seq.S3_L007_R1.A C3N-01071 LUAD miRNA-Seq tissue_normal CPT0070080006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L007_R1_001.unaln.bam 261613814 BAM S3_L007_R1 submitted_unaligned CPTAC3 2966831f-24bd-4c7e-ba90-1b2ccee361a5 960e0e84a3ef75e1a73fba1e3b7bc14f {"aliquot_tag": "ALQ_cb11b820", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.miRNA-Seq.T.hg38 C3N-01071 LUAD miRNA-Seq tumor CPT0070060009 91810475-e5e5-45d8-8f0e-e2684a40554e_mirnaseq_gdc_realn.bam 259867757 BAM harmonized CPTAC3 c1c9c979-ad03-458b-80b1-2049ac2c3abc b6e24d5913a649564046109e8a30f9c5 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.RNA-Seq.chimeric.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.chimeric.gdc_realn.bam 81962019 BAM chimeric harmonized CPTAC3 3f913993-9e56-4e59-b1d0-2df53ca6ac67 4e09607806bfb8671b7bd946e27fcded {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.RNA-Seq.chimeric.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.chimeric.gdc_realn.bam 33745070 BAM chimeric harmonized CPTAC3 057bf497-4971-48fc-9e17-0edab923f6c8 ef4567828de96d96063b3484c2333f53 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.RNA-Seq.genomic.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.genomic.gdc_realn.bam 8470730808 BAM genomic harmonized CPTAC3 565426a1-0037-411b-96d7-876ac8ffbd3e d86a13a375b9adcd6b1b5e3d5bd4ffd4 {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.RNA-Seq.genomic.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.genomic.gdc_realn.bam 9916193022 BAM genomic harmonized CPTAC3 80f39d21-d474-4335-bebb-06efbab2e229 811db2caa19ff4bebbcf04be695f7ca7 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.RNA-Seq.S23_L006_R1.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R1_001.fastq.gz 4051387909 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 4c4d3540-3ac8-4f35-9431-3904ccfae26d 5dc2b368c330cf6b8fc3532eba7b1fda {"aliquot_tag": "ALQ_cb11b820", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.RNA-Seq.S23_L006_R2.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R2_001.fastq.gz 4448966413 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 4f1d8c52-c31b-408f-9b9e-cf6b0e51529a 8b06309d728850b6517bdf7d8803a96a {"aliquot_tag": "ALQ_cb11b820", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.RNA-Seq.S6_L002_R1.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4537647048 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 1f0efdb6-32db-4f59-91b4-9a89cf3555ec e6e058f48f6e852808107ffe703fa52b {"aliquot_tag": "ALQ_e49e1bd0", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.RNA-Seq.S6_L002_R2.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4857174754 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 8fdcbcc3-2fd3-485d-920d-4b16188bda48 34b30c8742e73cd425abd2dffe78b7d4 {"aliquot_tag": "ALQ_e49e1bd0", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.RNA-Seq.transcriptome.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.transcriptome.gdc_realn.bam 10587750803 BAM transcriptome harmonized CPTAC3 50af55aa-58f5-49e9-ba9a-d274ff06015f 2f57c5064154dedf041683677dd4398c {"aliquot_tag": "ALQ_cb11b820", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.RNA-Seq.transcriptome.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.transcriptome.gdc_realn.bam 13663244716 BAM transcriptome harmonized CPTAC3 ac3ea539-4865-43f3-9b32-ce36a2b4a9b3 76484ccbda1d2b7e7fcd76db9686e2f2 {"aliquot_tag": "ALQ_e49e1bd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.Targeted.T C3N-01071 LUAD Targeted_Sequencing tumor CPT0070060006 CPT0070060006.CustomSelection.RP-1303.PDO-18786.bam 7895288857 BAM submitted_aligned CPTAC3 0fcaad4c-22d4-41dd-a033-d0596730c792 0dda275d716e25453622e0a82960c5d3 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.Targeted.T.hg38 C3N-01071 LUAD Targeted_Sequencing tumor CPT0070060006 cc5cdc32-6156-4237-8640-0855f5c3ba0a_targetedsequencing_gdc_realn.bam 10591900415 BAM harmonized CPTAC3 23246e81-6469-4bc9-b0cd-358f32d10ac7 7d3c01bc80f0c4cf42b4307e21268859 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.WGS.A C3N-01071 LUAD WGS tissue_normal CPT0070080009 CPT0070080009.WholeGenome.RP-1303.bam 61813471468 BAM submitted_aligned CPTAC3 b068ebe6-2149-41c3-870a-87e4dd4e9d10 c4ba80c584bd14f8cde0652b902905e7 {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.WGS.A.hg38 C3N-01071 LUAD WGS tissue_normal CPT0070080009 f5a98d66-4ef1-4359-8e11-998be462953e_wgs_gdc_realn.bam 90198176714 BAM harmonized CPTAC3 64378f5a-db58-4b48-9f06-8b684cb33503 4713df07084152d95dff41568d3d9a3e {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.WGS.N C3N-01071 LUAD WGS blood_normal CPT0070160002 CPT0070160002.WholeGenome.RP-1303.bam 74073356806 BAM submitted_aligned CPTAC3 c5476303-838c-41e1-a24c-fbfe0ea5e571 14907c6dbbde6cf4eb45cf147e4a49de {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01071.WGS.N.hg38 C3N-01071 LUAD WGS blood_normal CPT0070160002 aee98919-02bc-4677-80c2-675b148f9d7b_gdc_realn.bam 110229586482 BAM harmonized CPTAC3 a252f982-d631-44eb-a70b-0bd283386cb3 eece361d5e92a3086f113eda7e383977 {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01071.WGS.T C3N-01071 LUAD WGS tumor CPT0070060006 CPT0070060006.WholeGenome.RP-1303.bam 66539212899 BAM submitted_aligned CPTAC3 572164b8-1972-4352-b798-316664a1dbce d1fc128229993c1ee47e25738a61a0f1 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.WGS.T.hg38 C3N-01071 LUAD WGS tumor CPT0070060006 cc5cdc32-6156-4237-8640-0855f5c3ba0a_gdc_realn.bam 99610364744 BAM harmonized CPTAC3 60b3f014-79d2-4da2-9b18-85ecd73a1ee2 0dde44fd025a683e3e5457f4e0466286 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.WXS.A C3N-01071 LUAD WXS tissue_normal CPT0070080009 CPT0070080009.WholeExome.RP-1303.bam 39441924132 BAM submitted_aligned CPTAC3 399b44d0-e0bc-4a31-ac3b-8cc0a241106b c4198d52f1bfa2a0f2d7b4d3a31bf68a {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.WXS.A.hg38 C3N-01071 LUAD WXS tissue_normal CPT0070080009 f5a98d66-4ef1-4359-8e11-998be462953e_wxs_gdc_realn.bam 53998923183 BAM harmonized CPTAC3 577e1de1-f58a-47c0-93e7-b8ad050e6fe9 4c4d9850c2aaf3249e90010633034b0b {"aliquot_tag": "ALQ_5baea5b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01071.WXS.N C3N-01071 LUAD WXS blood_normal CPT0070160002 CPT0070160002.WholeExome.RP-1303.bam 32211899956 BAM submitted_aligned CPTAC3 7e4589ee-dfca-4f05-b8ad-402814743ab0 f29c8b220714486c5185f2a99a4fab65 {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01071.WXS.N.hg38 C3N-01071 LUAD WXS blood_normal CPT0070160002 aee98919-02bc-4677-80c2-675b148f9d7b_gdc_realn.bam 44855601786 BAM harmonized CPTAC3 846f177b-75df-4e30-a921-222756fb3a62 043049e740a09f6a8ff1599b4dd56ffa {"aliquot_tag": "ALQ_b81011fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01071.WXS.T C3N-01071 LUAD WXS tumor CPT0070060006 CPT0070060006.WholeExome.RP-1303.bam 32140915851 BAM submitted_aligned CPTAC3 99beee78-99f6-45a1-8a7f-a385cacbad9c 765da2f9d60bdeb279132cba723f2e3b {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01071.WXS.T.hg38 C3N-01071 LUAD WXS tumor CPT0070060006 cc5cdc32-6156-4237-8640-0855f5c3ba0a_gdc_realn.bam 44541647564 BAM harmonized CPTAC3 b06453df-4a46-4c8a-91c2-2df02c8acf3c a91aec251942989c88d5e3ecb4d74177 {"aliquot_tag": "ALQ_74210641", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.MethArray.Green.A C3N-01072 LUAD Methylation_Array tissue_normal CPT0084170009 203027390113_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 d3c58c9e-6b2b-46cc-8862-0173c95e3f5b 2c4e77e563fda472e5390df213a4a6e8 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.MethArray.Green.T C3N-01072 LUAD Methylation_Array tumor CPT0084140009 202234360029_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 345d2bfd-9d02-4ae7-aab5-50f15ea1f45f 86a44e6c87baddb36e14629504130f9c {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.MethArray.Red.A C3N-01072 LUAD Methylation_Array tissue_normal CPT0084170009 203027390113_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 36f06419-6a06-4af8-9390-8191ee3db140 a99181daa4aa1040775d565a219db84f {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.MethArray.Red.T C3N-01072 LUAD Methylation_Array tumor CPT0084140009 202234360029_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 66c8be3d-ec9f-44e1-8abd-f22cefd0aa60 ff4f23b4f4d769fe510fb89ded3e1adb {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.miRNA-Seq.A.hg38 C3N-01072 LUAD miRNA-Seq tissue_normal CPT0084170006 0cc7eafe-4164-41c8-9e02-c8153de11109_mirnaseq_gdc_realn.bam 202308690 BAM harmonized CPTAC3 d8a923bd-e12c-4bc7-899c-630e492b638a 670a013ed0484004c8db47ead2f2c30a {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.miRNA-Seq.S39_L008_R1.T C3N-01072 LUAD miRNA-Seq tumor CPT0084140006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTAGAG_S39_L008_R1_001.unaln.bam 259989093 BAM S39_L008_R1 submitted_unaligned CPTAC3 efb416fd-43db-458d-bd13-f7ba24885c30 f31ff1efff549a47bad73cb2e6725932 {"aliquot_tag": "ALQ_e8d2b03b", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.miRNA-Seq.S3_L005_R1.A C3N-01072 LUAD miRNA-Seq tissue_normal CPT0084170006 181108_UNC31-K00269_0163_BH23TVBBXY_TTAGGC_S3_L005_R1_001.unaln.bam 177875037 BAM S3_L005_R1 submitted_unaligned CPTAC3 be0a4db0-031d-4c4b-9a24-068c67e58a7d cae1a50138d5eaf7432d735fd0dce57d {"aliquot_tag": "ALQ_af72caeb", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.miRNA-Seq.T.hg38 C3N-01072 LUAD miRNA-Seq tumor CPT0084140006 c6dad8df-9b89-43f9-b7ed-6fa834065834_mirnaseq_gdc_realn.bam 280437044 BAM harmonized CPTAC3 a7e51c5c-6ee3-4e16-9579-c46b3b1d1274 371a6df1b4c36083d56568695a67b802 {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.RNA-Seq.chimeric.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.chimeric.gdc_realn.bam 60062766 BAM chimeric harmonized CPTAC3 137bbb1a-b90e-44e9-9830-29c0744e2317 a6973c416b43a5b19781fd393231ee06 {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.RNA-Seq.chimeric.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.chimeric.gdc_realn.bam 42775123 BAM chimeric harmonized CPTAC3 980d570b-311c-490c-8fd1-f2e69eafe6e6 3bc62d29afdc323fe7680a7822e86f5c {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.RNA-Seq.genomic.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.genomic.gdc_realn.bam 8815765170 BAM genomic harmonized CPTAC3 5b4f9a66-7245-42e9-a2ad-992f7d47fd51 675ddafac90d6e570e9d35a3e349a6ae {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.RNA-Seq.genomic.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.genomic.gdc_realn.bam 9270899583 BAM genomic harmonized CPTAC3 4e447c65-3511-4f22-aea6-f6444c02f73f ffbfc928e9f2a0c8c2a2cc54ca91daed {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.RNA-Seq.S19_L005_R1.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R1_001.fastq.gz 4245015905 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 629cd809-f46d-47f5-975c-1343d60d009f 350da5f8e00fd69fce260da85626db2d {"aliquot_tag": "ALQ_af72caeb", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.RNA-Seq.S19_L005_R2.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R2_001.fastq.gz 4441659588 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 9011b5e2-2438-40be-9b4b-6534bd6a8d87 75ee6163487ebd8b411b6322757cd9a1 {"aliquot_tag": "ALQ_af72caeb", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.RNA-Seq.S3_L001_R1.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4179362530 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 d10d5bc1-2946-463a-a3d0-9f96df9c5039 742381c698b003d7a621c2da2b661135 {"aliquot_tag": "ALQ_e8d2b03b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.RNA-Seq.S3_L001_R2.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4671077451 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 3fa41767-11d9-4377-8d3b-730f2135b130 02457eeb39c967a429e9c05c97da1480 {"aliquot_tag": "ALQ_e8d2b03b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.RNA-Seq.transcriptome.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.transcriptome.gdc_realn.bam 11061464622 BAM transcriptome harmonized CPTAC3 f6fea8f9-8b76-4ea5-be73-a1e4fc093119 94ad9054c2d91abad53dee03071e59b1 {"aliquot_tag": "ALQ_af72caeb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.RNA-Seq.transcriptome.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.transcriptome.gdc_realn.bam 11018349263 BAM transcriptome harmonized CPTAC3 876eca91-8770-4ef7-a144-6fa470155185 435c1e0d239b384f8050be0a086df29b {"aliquot_tag": "ALQ_e8d2b03b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.WGS.A C3N-01072 LUAD WGS tissue_normal CPT0084170009 CPT0084170009.WholeGenome.RP-1303.bam 56304006242 BAM submitted_aligned CPTAC3 1f4a5eae-3fd0-46ec-b89e-71007e6fabe5 baecff9e3e93fc0604f54456fe28cb93 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.WGS.A.hg38 C3N-01072 LUAD WGS tissue_normal CPT0084170009 82a84fd7-6aea-457a-8a7b-1e5b55ff8ba0_wgs_gdc_realn.bam 82193835312 BAM harmonized CPTAC3 cffd5dc7-404d-4203-b8a2-b9e051b42d59 98b9e65450d28434bb30aabd2788b549 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.WGS.N C3N-01072 LUAD WGS blood_normal CPT0084190002 CPT0084190002.WholeGenome.RP-1303.bam 60208273306 BAM submitted_aligned CPTAC3 fc4261b4-5d9d-4e10-a9a3-93fce0f3f78a 70d82a410b61268f1dab24775f3d1167 {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01072.WGS.N.hg38 C3N-01072 LUAD WGS blood_normal CPT0084190002 b667954b-08c5-40d6-ba47-697814f6e1b0_wgs_gdc_realn.bam 88398668137 BAM harmonized CPTAC3 783cd0c2-4d15-4848-860d-4bf5bc222cdc b3837354fec8f76713dcc3d789fb1cc9 {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01072.WGS.T C3N-01072 LUAD WGS tumor CPT0084140009 CPT0084140009.WholeGenome.RP-1303.bam 60847172050 BAM submitted_aligned CPTAC3 49cc22a6-48c7-4a55-81c3-d734bbcb1ab6 160c1dbb375c5e2f047ecd5f54998de9 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.WGS.T.hg38 C3N-01072 LUAD WGS tumor CPT0084140009 76279939-7003-484f-b026-9560e85eab31_wgs_gdc_realn.bam 91404229914 BAM harmonized CPTAC3 3161a1c1-0568-4b0c-8eb4-104d4ccb7096 9cd1ea8380ec162d9344e6c2ed6c0c31 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.WXS.A C3N-01072 LUAD WXS tissue_normal CPT0084170009 CPT0084170009.WholeExome.RP-1303.bam 45267057509 BAM submitted_aligned CPTAC3 ed882b69-6061-4e04-9a1e-d7d438c2bf01 b3310fa3c7fdd250818c41ab7bf24817 {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.WXS.A.hg38 C3N-01072 LUAD WXS tissue_normal CPT0084170009 82a84fd7-6aea-457a-8a7b-1e5b55ff8ba0_wxs_gdc_realn.bam 61475550886 BAM harmonized CPTAC3 57cf119d-c924-4004-b61e-ecf48a4a2d0d 6e5f2b110f5c0e946c3515997b7378ea {"aliquot_tag": "ALQ_3fcdd77a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01072.WXS.N C3N-01072 LUAD WXS blood_normal CPT0084190002 CPT0084190002.WholeExome.RP-1303.bam 35932519336 BAM submitted_aligned CPTAC3 df84509c-0233-491f-8a06-e6379079e91c 95629fa587468a644cd97f589a0826b9 {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01072.WXS.N.hg38 C3N-01072 LUAD WXS blood_normal CPT0084190002 b667954b-08c5-40d6-ba47-697814f6e1b0_wxs_gdc_realn.bam 47682532179 BAM harmonized CPTAC3 0170c81b-a67f-4609-bf36-9e33f571350f a083a00b906c5ccf9464c7a170937fdd {"aliquot_tag": "ALQ_172fb093", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01072.WXS.T C3N-01072 LUAD WXS tumor CPT0084140009 CPT0084140009.WholeExome.RP-1303.bam 35644850434 BAM submitted_aligned CPTAC3 9e1a9d11-5382-4088-a83d-7c47d19e1560 24982f917800a3a76231eee69dc26e57 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01072.WXS.T.hg38 C3N-01072 LUAD WXS tumor CPT0084140009 76279939-7003-484f-b026-9560e85eab31_wxs_gdc_realn.bam 48910624723 BAM harmonized CPTAC3 f95231ee-33c9-4d9e-9053-05db2dcc34d2 d2db6306217319cbbae7c443230b0e02 {"aliquot_tag": "ALQ_786dadaa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.MethArray.Green.T C3N-01074 LUAD Methylation_Array tumor CPT0105270009 202234380094_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 9ffe2fa1-6ee0-4d65-b558-c8b4c5da87ac f283e7670ee53f4b0710d6bbb445acfa {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.MethArray.Red.T C3N-01074 LUAD Methylation_Array tumor CPT0105270009 202234380094_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 f40069b2-a2c3-4506-8551-b3f600a310ce f956272ca00aec650111dbfdad32ad9d {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.miRNA-Seq.S48_L007_R1.T C3N-01074 LUAD miRNA-Seq tumor CPT0105270006 181108_UNC31-K00269_0163_BH23TVBBXY_TCGGCA_S48_L007_R1_001.unaln.bam 167051964 BAM S48_L007_R1 submitted_unaligned CPTAC3 aea9b493-ae77-4f8c-abbf-f44bf18a4806 37f7ed2022a9ac02398193a6a958d7a3 {"aliquot_tag": "ALQ_4b0fbc07", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.miRNA-Seq.T.hg38 C3N-01074 LUAD miRNA-Seq tumor CPT0105270006 5284842c-30b5-4488-8444-a06be245de7a_mirnaseq_gdc_realn.bam 183642295 BAM harmonized CPTAC3 60ee0955-3e9d-44e9-b2da-125a05de80ff 295d78fb42884c18b1ffb4a78b6c51de {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.RNA-Seq.chimeric.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.chimeric.gdc_realn.bam 33858279 BAM chimeric harmonized CPTAC3 df9bdae9-d5fa-45e3-99b7-ab00e9d38067 8023ec8ef717888288f254756be74928 {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.RNA-Seq.genomic.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.genomic.gdc_realn.bam 8873171313 BAM genomic harmonized CPTAC3 e84c3a8a-5948-46db-a2e3-0319853eb631 605f63f113beeff8295ec02743dfa262 {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.RNA-Seq.S14_L004_R1.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4026443433 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 21656919-971c-49c2-964b-4c42eee9c7b1 fcf6b46d5e446cc1873689c1f38b496f {"aliquot_tag": "ALQ_4b0fbc07", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.RNA-Seq.S14_L004_R2.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4425737679 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 79c31b21-d6e0-49fe-9e4e-23481b77ad7a c8b789eb196ebdbc9a68aef76386738c {"aliquot_tag": "ALQ_4b0fbc07", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.RNA-Seq.transcriptome.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.transcriptome.gdc_realn.bam 12374657307 BAM transcriptome harmonized CPTAC3 e3f7bc16-2f36-4765-bcc6-83d014a235a8 2b54ea0882952255bb98278cc0f79677 {"aliquot_tag": "ALQ_4b0fbc07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.WGS.N C3N-01074 LUAD WGS blood_normal CPT0107740002 CPT0107740002.WholeGenome.RP-1303.bam 58863976811 BAM submitted_aligned CPTAC3 b5ab50b1-3dee-4016-af64-72ff391a9a6c cceaca4955ef9fc72c2a6a7fa0474c00 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01074.WGS.N.hg38 C3N-01074 LUAD WGS blood_normal CPT0107740002 ba41c945-fc52-4c8e-b417-c26730c05dfb_wgs_gdc_realn.bam 87202550854 BAM harmonized CPTAC3 7c3c4966-40ee-433a-b1e6-f526fc0b3085 4b4782453908a2a442a6bf4014621365 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01074.WGS.T C3N-01074 LUAD WGS tumor CPT0105270009 CPT0105270009.WholeGenome.RP-1303.bam 59114317867 BAM submitted_aligned CPTAC3 05ffde4f-35b2-45d4-b655-db63f5d9ed93 6cb5579800aae8269d40237493d8adc3 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.WGS.T.hg38 C3N-01074 LUAD WGS tumor CPT0105270009 5968cc7b-3769-4e06-999a-61df8bfcd5e2_wgs_gdc_realn.bam 86799399244 BAM harmonized CPTAC3 6584e7c4-e8a5-4c8a-8e7a-bbdd8ac7957a fa33dc625aceb18bae710e74e50173c4 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.WXS.N C3N-01074 LUAD WXS blood_normal CPT0107740002 CPT0107740002.WholeExome.RP-1303.bam 43069560973 BAM submitted_aligned CPTAC3 931ea9e0-57d1-4e9f-9989-e2a17a944739 ebbef8d5b869248bbf4771ba7f9f6547 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01074.WXS.N.hg38 C3N-01074 LUAD WXS blood_normal CPT0107740002 ba41c945-fc52-4c8e-b417-c26730c05dfb_wxs_gdc_realn.bam 57202031288 BAM harmonized CPTAC3 717fbef0-092e-4897-8d11-2235c45bc508 30cb2e85abecf1d5a2af030b3e9fd663 {"aliquot_tag": "ALQ_cc908254", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01074.WXS.T C3N-01074 LUAD WXS tumor CPT0105270009 CPT0105270009.WholeExome.RP-1303.bam 40322339213 BAM submitted_aligned CPTAC3 d4fcd5a1-2b60-4167-99ad-08f559962793 894861b4512bafea07c6dd6fad5cfe95 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01074.WXS.T.hg38 C3N-01074 LUAD WXS tumor CPT0105270009 5968cc7b-3769-4e06-999a-61df8bfcd5e2_wxs_gdc_realn.bam 55221091493 BAM harmonized CPTAC3 57874edd-2bce-423c-ac14-e35d46255524 e3c4402a228286aff9799dd100216e84 {"aliquot_tag": "ALQ_dbb0a196", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.MethArray.Green.A C3N-01077 CCRCC Methylation_Array tissue_normal CPT0210800006 204930630084_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c0874cb5-eb19-456f-a10d-232b7af28edc 5db59430105804148d1ad2e421142934 {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.MethArray.Green.T C3N-01077 CCRCC Methylation_Array tumor CPT0210780006 203219760081_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 20e949ab-899e-4a66-b3cd-781e8fbb444c a3954c7359f54720ef468390dce8498b {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.MethArray.Red.A C3N-01077 CCRCC Methylation_Array tissue_normal CPT0210800006 204930630084_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa52360d-6e06-49ab-af3e-287eae78106d fbd842bb361c94e6909ed5658717d990 {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.MethArray.Red.T C3N-01077 CCRCC Methylation_Array tumor CPT0210780006 203219760081_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 7df391fc-44b3-40f5-b957-101bd7fd6006 cbc2e3fc1a1d92a8f1ada4283ded49fc {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.miRNA-Seq.A.hg38 C3N-01077 CCRCC miRNA-Seq tissue_normal CPT0210800009 814e4fd0-5c79-47d3-b2ba-a2a82f89de69_mirnaseq_gdc_realn.bam 262114274 BAM harmonized CPTAC3 044c64f1-f5ec-4ee1-acd4-2df5757c0551 eccdbf63267214dd3e9e6d87d432a9bc {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.miRNA-Seq.S14_L003_R1.A C3N-01077 CCRCC miRNA-Seq tissue_normal CPT0210800009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGGAAT_S14_L003_R1_001.unaln.bam 240634165 BAM S14_L003_R1 submitted_unaligned CPTAC3 c13d218d-ae00-45b4-9f2a-f9bb4cd83af1 42479ba5dfc1c9806b63ec7c37e480a2 {"aliquot_tag": "ALQ_6f144d1c", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.miRNA-Seq.S26_L008_R1.T C3N-01077 CCRCC miRNA-Seq tumor CPT0210780009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L008_R1_001.unaln.bam 206989939 BAM S26_L008_R1 submitted_unaligned CPTAC3 99c48127-7e01-49b0-8c98-47e62ebced76 ff12716971c56a107ef9eeef609f60e9 {"aliquot_tag": "ALQ_ae32b408", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.miRNA-Seq.T.hg38 C3N-01077 CCRCC miRNA-Seq tumor CPT0210780009 1e62bf3c-00ed-4288-b629-42ef355a4bf7_mirnaseq_gdc_realn.bam 222882292 BAM harmonized CPTAC3 44c934cf-fe58-4bb2-b8a1-67745c3161f8 09ab846c8caf8ec8114ebf44ed6e6754 {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.RNA-Seq.chimeric.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.chimeric.gdc_realn.bam 64524914 BAM chimeric harmonized CPTAC3 b8737694-7f6e-4bf7-96e0-881ebaa60394 fc7a547ed7e3e042cfe9d3cdfa9ddf2d {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.RNA-Seq.chimeric.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.chimeric.gdc_realn.bam 315561600 BAM chimeric harmonized CPTAC3 e691fabb-4f2c-4063-bc00-87117bb15154 de1f172aedec98801490a6803931047a {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.RNA-Seq.genomic.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.genomic.gdc_realn.bam 8366122461 BAM genomic harmonized CPTAC3 ea5ed8cb-f6ef-4730-a5b1-6bcef8e7189b 6361bbf2d7ffeadf769cade653770625 {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.RNA-Seq.genomic.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.genomic.gdc_realn.bam 8031638426 BAM genomic harmonized CPTAC3 7c4d1bee-8ccd-4841-a5e4-f1c04729951c d4a6f2af0cc73096efba5da155fa7937 {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.RNA-Seq.S13_L004_R1.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3523068878 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 9f7e6538-ae79-4aa9-97b6-da7b44fda3f3 00ed944bf8b10a147fdc35b8dc7bd104 {"aliquot_tag": "ALQ_ae32b408", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.RNA-Seq.S13_L004_R2.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3819871107 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 4b877408-30d0-4212-807e-27918248a90a 3ef8573a339da74cb304a5a086baa219 {"aliquot_tag": "ALQ_ae32b408", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.RNA-Seq.S15_L004_R1.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R1_001.fastq.gz 3988195464 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 aee315a1-3280-4128-8aaa-c4accc4fc3b1 58b3d59443d95fb92ea1b71319dd723d {"aliquot_tag": "ALQ_6f144d1c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.RNA-Seq.S15_L004_R2.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R2_001.fastq.gz 4281849447 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 f2452eaa-c386-44e5-bc04-c397f13982d7 ffd6f2e18e116828b3cd47be334333e1 {"aliquot_tag": "ALQ_6f144d1c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.RNA-Seq.transcriptome.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.transcriptome.gdc_realn.bam 9881760587 BAM transcriptome harmonized CPTAC3 3d042701-aa6b-42f7-968f-d4658e57f166 2f2c1c27a0575bbdf026fcbd095cfd50 {"aliquot_tag": "ALQ_6f144d1c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.RNA-Seq.transcriptome.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.transcriptome.gdc_realn.bam 8609711178 BAM transcriptome harmonized CPTAC3 dffb1970-ff80-4708-b518-5a27fe86c1a2 34faf5ed07a3d74102715a63ed78b187 {"aliquot_tag": "ALQ_ae32b408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.WGS.N C3N-01077 CCRCC WGS blood_normal CPT0210880002 CPT0210880002.WholeGenome.RP-1303.bam 56342561416 BAM submitted_aligned CPTAC3 0b94d3f3-26a9-4a92-b22d-8f774bc4e389 3ae300ac8ca77961ded9389c208f55e1 {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01077.WGS.N.hg38 C3N-01077 CCRCC WGS blood_normal CPT0210880002 7cdf15b4-931f-4160-94fb-e8c95cce48da_wgs_gdc_realn.bam 83758844541 BAM harmonized CPTAC3 67f42b9f-dab7-4404-8b1a-2e6a0956df6c 2b6542c2b473851cac89378ff73b0499 {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01077.WGS.T C3N-01077 CCRCC WGS tumor CPT0210780006 CPT0210780006.WholeGenome.RP-1303.bam 55637314177 BAM submitted_aligned CPTAC3 918fe0b9-8e93-42ec-b368-8f83a6605f24 320bac013e3ac05d25a658b10d9f669a {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.WGS.T.hg38 C3N-01077 CCRCC WGS tumor CPT0210780006 6e83f210-21fe-4b48-80aa-5437252c05e2_wgs_gdc_realn.bam 83980787593 BAM harmonized CPTAC3 a76ef9e6-b595-4ceb-baf1-8195dc7fc535 0428182e84f29a2b7bc3780d7de198ff {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.WXS.A C3N-01077 CCRCC WXS tissue_normal CPT0210800006 CPT0210800006.WholeExome.RP-1303.bam 24309913843 BAM submitted_aligned CPTAC3 13044998-5584-448c-a0f9-27afdf6d93fa 48e949cc7b18b7b06c383b536bd9d1cb {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.WXS.A.hg38 C3N-01077 CCRCC WXS tissue_normal CPT0210800006 90a3f5b4-4ef3-4151-8361-d14929c06c41_wxs_gdc_realn.bam 33144592993 BAM harmonized CPTAC3 45e10a25-e4f9-4724-8fd7-5d43739121b2 e61c4b62d1448c053b10e4e8e397c7fa {"aliquot_tag": "ALQ_ffab508d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01077.WXS.N C3N-01077 CCRCC WXS blood_normal CPT0210880002 CPT0210880002.WholeExome.RP-1303.bam 27066672217 BAM submitted_aligned CPTAC3 27d141a2-3316-41af-8838-95802e4cac47 c656fb651a42d900ad1c15ddaeb6c258 {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01077.WXS.N.hg38 C3N-01077 CCRCC WXS blood_normal CPT0210880002 7cdf15b4-931f-4160-94fb-e8c95cce48da_wxs_gdc_realn.bam 37650806651 BAM harmonized CPTAC3 e0d576b5-1bd3-4bbf-be4d-a16b7e93fc37 55ccb6a299f5edfa4dc1aa653a86256b {"aliquot_tag": "ALQ_c8b6df55", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01077.WXS.T C3N-01077 CCRCC WXS tumor CPT0210780006 CPT0210780006.WholeExome.RP-1303.bam 18556925283 BAM submitted_aligned CPTAC3 40d11b6e-b1e8-41d8-b431-f1682492551d 68990e75e191be40f09f2f032963b68f {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01077.WXS.T.hg38 C3N-01077 CCRCC WXS tumor CPT0210780006 6e83f210-21fe-4b48-80aa-5437252c05e2_wxs_gdc_realn.bam 25979250352 BAM harmonized CPTAC3 c161cad9-f18c-4405-846e-93e9c8060ab8 5eeaf0de9d50cf6125319157473a2713 {"aliquot_tag": "ALQ_3e8da999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.MethArray.Green.A C3N-01078 CCRCC Methylation_Array tissue_normal CPT0210980006 204930640120_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3a7baed5-7f87-4b4f-a807-0a367a91adaa 9671217b3a55ae6a6438dfe484a14891 {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.MethArray.Green.T C3N-01078 CCRCC Methylation_Array tumor CPT0210950006 203219650156_R07C01_Grn.idat 13676217 IDAT Green NA CPTAC3 b1ae97db-17f0-4c29-ad77-98df204c09ed dfe20bf86ac466dd043d8870c15a09ab {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.MethArray.Red.A C3N-01078 CCRCC Methylation_Array tissue_normal CPT0210980006 204930640120_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 ffd38a10-5387-4fe7-9746-0e07b721ebb7 cf385b0194c97c970530d3441d4a984a {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.MethArray.Red.T C3N-01078 CCRCC Methylation_Array tumor CPT0210950006 203219650156_R07C01_Red.idat 13676217 IDAT Red NA CPTAC3 f7956131-cbba-4cb1-87f6-7944351bfb35 2bf0294be1dd5e4806ac7a1925175468 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.miRNA-Seq.A.hg38 C3N-01078 CCRCC miRNA-Seq tissue_normal CPT0210980009 f6ead397-09bd-42a1-8a77-87ca59160446_mirnaseq_gdc_realn.bam 264655061 BAM harmonized CPTAC3 4eef7a37-b95f-476f-a55f-c29958a87e87 d2bf0c9512576aa7aaf6073689fdb37c {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.miRNA-Seq.S13_L003_R1.A C3N-01078 CCRCC miRNA-Seq tissue_normal CPT0210980009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTAGCT_S13_L003_R1_001.unaln.bam 246166082 BAM S13_L003_R1 submitted_unaligned CPTAC3 34355f4a-f294-495e-988d-d3a1f307c2d5 c1e34b5a7a242cce1483e3e5893d8626 {"aliquot_tag": "ALQ_9438d578", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.miRNA-Seq.S27_L008_R1.T C3N-01078 CCRCC miRNA-Seq tumor CPT0210950009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L008_R1_001.unaln.bam 223128195 BAM S27_L008_R1 submitted_unaligned CPTAC3 456eb8e7-8ffc-48c6-8790-5db4ca485a71 9658499b09e08b21f8468ed89be6251b {"aliquot_tag": "ALQ_6ca811c9", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.miRNA-Seq.T.hg38 C3N-01078 CCRCC miRNA-Seq tumor CPT0210950009 8001c1bb-a50d-428f-850c-d54970ba6fca_mirnaseq_gdc_realn.bam 243856594 BAM harmonized CPTAC3 bcd2a430-8862-4fb1-9deb-3ace48947385 1569104ad6b55d6c266052dc584d6708 {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.RNA-Seq.chimeric.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.chimeric.gdc_realn.bam 64564537 BAM chimeric harmonized CPTAC3 d830279a-06b7-4192-a46f-654142d0b9a4 a24bf84b7578e919adceed1476df9909 {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.RNA-Seq.chimeric.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.chimeric.gdc_realn.bam 294546323 BAM chimeric harmonized CPTAC3 551f723f-6dfb-4835-bbbd-1b32e39545bc d6b46835cffec92c782e602d37c83aee {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.RNA-Seq.genomic.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.genomic.gdc_realn.bam 7714760138 BAM genomic harmonized CPTAC3 a65497ca-87af-449b-a1a3-004e74bebfbf 107214b30c055b0f66973b7f09eebd00 {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.RNA-Seq.genomic.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.genomic.gdc_realn.bam 7133938771 BAM genomic harmonized CPTAC3 5c3fce88-cb85-4af1-8fc0-fc6f5ee581ee 9fcdbd251adedcaba84acf98982654e9 {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.RNA-Seq.S14_L004_R1.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R1_001.fastq.gz 3682795915 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 5d1dc0e1-abc8-478e-aee3-73e2cb7558a0 a585216cc67a43ceb15f1a4b020bd264 {"aliquot_tag": "ALQ_9438d578", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.RNA-Seq.S14_L004_R2.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R2_001.fastq.gz 4003399707 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 b696440c-1e71-45e5-bf40-9c8683bd642f 85fdb56975fbe75aa7462da288861cd7 {"aliquot_tag": "ALQ_9438d578", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.RNA-Seq.S16_L004_R1.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3141262435 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 8c91e7bf-c519-4b69-8798-cd10db557252 25dcd8cf984ecd377a3e8f3da82b923b {"aliquot_tag": "ALQ_6ca811c9", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.RNA-Seq.S16_L004_R2.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3442927992 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 51d973dd-a9df-49e4-ac0d-641eb0816428 ac60558c89575a45e846090fcf27fc33 {"aliquot_tag": "ALQ_6ca811c9", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.RNA-Seq.transcriptome.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.transcriptome.gdc_realn.bam 8644156407 BAM transcriptome harmonized CPTAC3 55d90514-e879-4ac7-9de2-e3f98a31f1aa 91352fd5135f60d77de23644c9a600dd {"aliquot_tag": "ALQ_9438d578", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.RNA-Seq.transcriptome.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.transcriptome.gdc_realn.bam 8153581491 BAM transcriptome harmonized CPTAC3 0fb2ebf2-1ef1-4419-be18-54c05f7c0797 bc39e981779e350551c19cccc268b939 {"aliquot_tag": "ALQ_6ca811c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.WGS.N C3N-01078 CCRCC WGS blood_normal CPT0211060002 CPT0211060002.WholeGenome.RP-1303.bam 60127947410 BAM submitted_aligned CPTAC3 d94e17fa-7ca7-4869-aab7-c03ed8803501 053fe3968fad4883e6a7e133776b63a1 {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01078.WGS.N.hg38 C3N-01078 CCRCC WGS blood_normal CPT0211060002 39017d3f-1ff1-4601-821b-45d047bc48f5_wgs_gdc_realn.bam 88613823777 BAM harmonized CPTAC3 61b2db31-9677-4e24-a6fc-408b882f26bd e1511b036fb12b3fa5d316f7170aa30a {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01078.WGS.T C3N-01078 CCRCC WGS tumor CPT0210950006 CPT0210950006.WholeGenome.RP-1303.bam 58712936452 BAM submitted_aligned CPTAC3 285efe95-18a9-4000-b20a-9042a5277030 1c7869c57d83d9619577fa93b48de087 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.WGS.T.hg38 C3N-01078 CCRCC WGS tumor CPT0210950006 ef098328-f81b-4559-9de6-2ff6b1080a1a_wgs_gdc_realn.bam 86710820523 BAM harmonized CPTAC3 e81bd015-84a8-4b08-b171-b5f257c3c72d 1b4686ae1d8fef4a848a0b8e00159046 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.WXS.A C3N-01078 CCRCC WXS tissue_normal CPT0210980006 CPT0210980006.WholeExome.RP-1303.bam 30507112418 BAM submitted_aligned CPTAC3 e06ac5b8-ce40-4917-afec-d29531246ce5 117119d336f18470983334e556fa952a {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.WXS.A.hg38 C3N-01078 CCRCC WXS tissue_normal CPT0210980006 6b604d92-77ce-48e6-9d64-cea87480c95a_wxs_gdc_realn.bam 42259010659 BAM harmonized CPTAC3 75bca7f8-7eaa-4269-b142-992ac48bee3e cbd2cfefc2aacea790ddbab2de419b0d {"aliquot_tag": "ALQ_487c8e9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01078.WXS.N C3N-01078 CCRCC WXS blood_normal CPT0211060002 CPT0211060002.WholeExome.RP-1303.bam 27812299751 BAM submitted_aligned CPTAC3 f1b85098-2c20-4092-9245-4944970e36ec d803edd01124f1a6b6d7787dd6dd65ce {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01078.WXS.N.hg38 C3N-01078 CCRCC WXS blood_normal CPT0211060002 39017d3f-1ff1-4601-821b-45d047bc48f5_wxs_gdc_realn.bam 38065946053 BAM harmonized CPTAC3 249b0ae8-3fef-4096-afdd-d253e629ccd7 a15832ce6a872f32cbb389e89259519c {"aliquot_tag": "ALQ_3da2e8ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01078.WXS.T C3N-01078 CCRCC WXS tumor CPT0210950006 CPT0210950006.WholeExome.RP-1303.bam 26713219676 BAM submitted_aligned CPTAC3 aabfb651-3964-495f-b886-14d81198ab60 e92b91a31bfb8b331f53c6f51fe6ccf0 {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01078.WXS.T.hg38 C3N-01078 CCRCC WXS tumor CPT0210950006 ef098328-f81b-4559-9de6-2ff6b1080a1a_wxs_gdc_realn.bam 36410984865 BAM harmonized CPTAC3 7e6e20b2-4d7a-4cd5-9228-08d196ec9432 53896b733004a8cdf4351c0be2ed030b {"aliquot_tag": "ALQ_fc170c58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01079.MethArray.Green.T C3N-01079 UCEC Methylation_Array tumor CPT0211120007 203561620162_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 96d33e2d-ebfd-4b6a-8fd5-137eb4025e95 a8ff23095196f332365a4059b8c8b209 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.MethArray.Red.T C3N-01079 UCEC Methylation_Array tumor CPT0211120007 203561620162_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 b4490f98-e888-4119-b419-bad1786bf02e 87d8ddf313f4d37f4c7c2e1e128d07f1 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.miRNA-Seq.S23_L004_R1.T C3N-01079 UCEC miRNA-Seq tumor CPT0211120010 190508_UNC31-K00269_0215_BH7FYKBBXY_GAGTGG_S23_L004_R1_001.unaln.bam 254832821 BAM S23_L004_R1 submitted_unaligned CPTAC3 c997f379-64d9-473d-aa75-435be851f2c3 2013b571bfc5e9578f150c0cb129b1b8 {"aliquot_tag": "ALQ_f46bcde5", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.miRNA-Seq.T.hg38 C3N-01079 UCEC miRNA-Seq tumor CPT0211120010 9d400e7a-9ff8-4c84-bcbb-e65a1e8e8222_mirnaseq_gdc_realn.bam 292940631 BAM harmonized CPTAC3 2f59f988-d460-439a-a9f3-7a3cb4cda3e8 e03c1ce7484147ae547c174219de57e4 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.chimeric.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.chimeric.gdc_realn.bam 35056149 BAM chimeric harmonized CPTAC3 205c1239-4e79-47e8-a881-38d4519247a7 207010b8eb678a396933d03251ffe271 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.chimeric.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.chimeric.gdc_realn.bam 12828803 BAM chimeric harmonized CPTAC3 69429182-f5ae-4d82-aed4-a7fce320facf 63d7c5e9a532076482911e2c65e59d6a {"aliquot_tag": "ALQ_a2b55ea6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.genomic.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.genomic.gdc_realn.bam 10306363264 BAM genomic harmonized CPTAC3 8adaa78a-ee74-48fe-8723-a95f0ef0531b 260089723f2d928067f0a5a7ca5a0375 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.genomic.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.genomic.gdc_realn.bam 5679338053 BAM genomic harmonized CPTAC3 ce178419-c649-406a-a64e-cbab68d89a06 8a0c7096254211f9e645668720f8d304 {"aliquot_tag": "ALQ_a2b55ea6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.S17_L005_R1.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4451240610 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 54477041-7f9b-446c-b28f-da855cd3206e 172804c87a0a6d5f08b735041f3af57d {"aliquot_tag": "ALQ_f46bcde5", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.S17_L005_R2.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 5104018517 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 3c890e56-0f9d-4bc8-bdfb-91f4a3764825 26cf1a8318cc3be189b03a5ace875d18 {"aliquot_tag": "ALQ_f46bcde5", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.S70_R1.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R1_001.fastq.gz 2600057148 FASTQ S70_R1 submitted_unaligned CPTAC3 f6993c9e-fdb5-4bab-851f-c278fea90818 f08b0286ddda199092a41aceda8bee4d {"aliquot_tag": "ALQ_a2b55ea6", "sample": "S70", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.S70_R2.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R2_001.fastq.gz 2851881484 FASTQ S70_R2 submitted_unaligned CPTAC3 4fffb0cc-4f99-42bd-9db7-f332bd495995 2cc90402af969e898c567e48f48fa98d {"aliquot_tag": "ALQ_a2b55ea6", "sample": "S70", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.transcriptome.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.transcriptome.gdc_realn.bam 15789022524 BAM transcriptome harmonized CPTAC3 f23df052-ce85-495c-bbc6-c91a0a634ed9 2fe588d348360a2c9d9a24504cbb3217 {"aliquot_tag": "ALQ_f46bcde5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.RNA-Seq.transcriptome.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.transcriptome.gdc_realn.bam 4173513626 BAM transcriptome harmonized CPTAC3 a981e3ef-dacd-49bd-b037-54ce172a7fb5 acf50e6a0e61e6c484f47ef9e22d1083 {"aliquot_tag": "ALQ_a2b55ea6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.WGS.N C3N-01079 UCEC WGS blood_normal CPT0211240002 CPT0211240002.WholeGenome.RP-1303.bam 85830791142 BAM submitted_aligned CPTAC3 e51feaef-7da9-48d4-bfc6-c8d947313b2f 42f5cf8f689be3497fab4902d8129a47 {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01079.WGS.N.hg38 C3N-01079 UCEC WGS blood_normal CPT0211240002 58064c6a-c59b-435e-8f15-b2c4e6f35923_wgs_gdc_realn.bam 128014194117 BAM harmonized CPTAC3 9d32085d-ee83-4029-bdf6-f71aa6dd6219 91b33a92acac59e62f87cce9b62dd368 {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01079.WGS.T C3N-01079 UCEC WGS tumor CPT0211120007 CPT0211120007.WholeGenome.RP-1303.bam 61711677083 BAM submitted_aligned CPTAC3 d4eb3abd-7c25-494c-9c9c-35d5d2b0ae12 5f706484bd48b412d0b845f303dbfb0c {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.WGS.T.hg38 C3N-01079 UCEC WGS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wgs_gdc_realn.bam 88908022934 BAM harmonized CPTAC3 b8eb67c0-024a-408d-b386-4c4805c14fb3 503cba4cdde733249d8c382b496dd5a2 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.WXS.N C3N-01079 UCEC WXS blood_normal CPT0211240002 CPT0211240002.WholeExome.RP-1303.bam 25180971968 BAM submitted_aligned CPTAC3 e706b525-9c80-4d8b-bf90-183528ed823e 8cf5a21799a0ee798ebee093be277a9f {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01079.WXS.N.hg38 C3N-01079 UCEC WXS blood_normal CPT0211240002 58064c6a-c59b-435e-8f15-b2c4e6f35923_wxs_gdc_realn.bam 34106042355 BAM harmonized CPTAC3 d98b711a-fd15-4e01-a94e-7c601b472903 708d29afd54a74657f75ce871de10f8d {"aliquot_tag": "ALQ_aaa1a86", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01079.WXS.T C3N-01079 UCEC WXS tumor CPT0211120007 CPT0211120007.WholeExome.RP-1303.bam 23292018621 BAM submitted_aligned CPTAC3 6deaf1ce-6405-47e4-9967-cda4828ab11b a2e9339384b45ab1efe21acb3318ed1a {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01079.WXS.T.hg38 C3N-01079 UCEC WXS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wxs_gdc_realn.bam 32289014569 BAM harmonized CPTAC3 8e90126a-f7b3-4e3c-be03-9bc5649de5d4 da1ffdb7c7837a94dfffc206405e3064 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01080.MethArray.Green.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f524b12a-703c-4bbb-852c-4388a7988fc1 01e9ebee992df49b3e3308cfb01d96c7 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.MethArray.Green.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 500f1bc6-cd94-405b-9414-b70e60484a08 969425da800e3183fd0f01f8a73f47dd {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.MethArray.Red.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 1234a8af-5e29-4859-ad25-0f53b753ac0d 036d93ef8e5b5f93eb30772086e125ff {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.MethArray.Red.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 9b1a2bb1-8cee-49a7-8931-8a2fbb8eb6f5 83c25f2997d008337ee6ad449c7238c9 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.miRNA-Seq.A.hg38 C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 18ce9d8b-99ea-4066-881e-30a64794f027_mirnaseq_gdc_realn.bam 168386415 BAM harmonized CPTAC3 78da683a-28d7-429a-b614-8625551df795 0ccf896a6340720e33fe69102668c789 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.miRNA-Seq.S12_L003_R1.A C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L003_R1_001.unaln.bam 152442457 BAM S12_L003_R1 submitted_unaligned CPTAC3 d0947c5c-0531-4424-b590-6f3788393d77 b4a2508cb9f338ef87175ea1ce555404 {"aliquot_tag": "ALQ_562410ab", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.miRNA-Seq.S1_L001_R1.T C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L001_R1_001.unaln.bam 161252414 BAM S1_L001_R1 submitted_unaligned CPTAC3 b2f6166e-aa30-4aa2-88a7-06fe374083e6 b6335a9878162f607c55f3a106816d4f {"aliquot_tag": "ALQ_d964e50b", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.miRNA-Seq.T.hg38 C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 73d6a58d-7d4a-4038-80eb-2375acdff9ef_mirnaseq_gdc_realn.bam 177900370 BAM harmonized CPTAC3 8161e185-b873-4d01-9dfe-d0abe28d3595 d60c963cd9a57a5c6654b0cec9c13a1b {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.RNA-Seq.chimeric.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.chimeric.gdc_realn.bam 48725042 BAM chimeric harmonized CPTAC3 6f32ed3a-c5a3-40b0-943b-36fb1a9357c4 8e5487f642d63093cb030bcef9ce9af9 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.RNA-Seq.chimeric.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.chimeric.gdc_realn.bam 336260806 BAM chimeric harmonized CPTAC3 5ecd239b-a214-4ba6-854e-cb1250b07a26 69ac964a04219e92fff45843f19e9685 {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.RNA-Seq.genomic.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.genomic.gdc_realn.bam 7821691328 BAM genomic harmonized CPTAC3 af855c02-5221-48af-b047-83425a7734ee 50792f4b4a5f1f2e95186909fc04b7b2 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.RNA-Seq.genomic.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.genomic.gdc_realn.bam 8637157054 BAM genomic harmonized CPTAC3 965e0238-ebc6-4ea8-9d2c-af257507d8fb 31c1d8c26629b920af765bd8833dd68f {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.RNA-Seq.S13_L004_R1.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3666040235 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 af2bf584-a484-47a1-9943-fcb724e8d988 a536135413a1d2aa709dcfc56ffa1aa8 {"aliquot_tag": "ALQ_562410ab", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.RNA-Seq.S13_L004_R2.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 3958534977 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 c29a8380-beb8-44d0-b3df-99baf6f63a44 fc4476bb1c71c3ac60bf982b755546ec {"aliquot_tag": "ALQ_562410ab", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.RNA-Seq.S19_L005_R1.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3829466058 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 1b0efbb7-7368-48f5-9055-ab24b5b92b5e 49968cdfa14d7cbd086bfba73c05df8b {"aliquot_tag": "ALQ_d964e50b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.RNA-Seq.S19_L005_R2.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3612647989 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 af7ab2d9-a4fa-4122-8214-16ca279cb8c3 a36804c8df4694404a6ce3da6205f682 {"aliquot_tag": "ALQ_d964e50b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.RNA-Seq.transcriptome.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.transcriptome.gdc_realn.bam 9283029119 BAM transcriptome harmonized CPTAC3 cd3f813c-872d-4916-afca-da4e620449ce 64d8a5071c498d3c5cb9aca6823da8d0 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.RNA-Seq.transcriptome.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.transcriptome.gdc_realn.bam 8774775736 BAM transcriptome harmonized CPTAC3 d012ecc3-59bc-481e-b7fb-e897333f94b7 7e716322e34a1381200eecbaa7d21a20 {"aliquot_tag": "ALQ_d964e50b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.WGS.N C3N-01080 CCRCC WGS blood_normal CPT0211420002 CPT0211420002.WholeGenome.RP-1303.bam 57836617097 BAM submitted_aligned CPTAC3 e56cc957-a8d5-4a2d-9046-5229f25bb8d3 459e8efb7fe2126b8f1fbfe92599f22a {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01080.WGS.N.hg38 C3N-01080 CCRCC WGS blood_normal CPT0211420002 66196c34-bbe5-404d-8793-db1494f8c66b_wgs_gdc_realn.bam 85377793352 BAM harmonized CPTAC3 32a8def8-5de4-44ba-ae07-944c05931e16 9b8ec3e44fd71e7e85fb3f175896f6a4 {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01080.WGS.T C3N-01080 CCRCC WGS tumor CPT0211320006 CPT0211320006.WholeGenome.RP-1303.bam 71991748739 BAM submitted_aligned CPTAC3 8a069d14-7ecf-40e9-be35-5618e948818e 5635e83ddf9a463e0ee9effe0bab489d {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.WGS.T.hg38 C3N-01080 CCRCC WGS tumor CPT0211320006 ebe8f72f-4900-4bf0-a1ec-b1b1e8c9c727_wgs_gdc_realn.bam 105557370045 BAM harmonized CPTAC3 2b7aea9f-bf40-4e24-87dc-1b62ac2401a7 be00c286a2c2ef9dbbaa2fe5c985e2d9 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.WXS.A C3N-01080 CCRCC WXS tissue_normal CPT0211340006 CPT0211340006.WholeExome.RP-1303.bam 27820369549 BAM submitted_aligned CPTAC3 e453c133-f97a-477a-aebc-0c17cdcd9e1b 3827d7abbaef96454a9a348442fcf1e9 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.WXS.A.hg38 C3N-01080 CCRCC WXS tissue_normal CPT0211340006 df01e2ee-cf2b-498a-8a10-13ac889f7984_wxs_gdc_realn.bam 38665576127 BAM harmonized CPTAC3 fc05a67d-7882-4edf-8d0b-10deb7f4d8ad 25448c8f4291472766e62ac6a2ce6756 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.WXS.N C3N-01080 CCRCC WXS blood_normal CPT0211420002 CPT0211420002.WholeExome.RP-1303.bam 29676115168 BAM submitted_aligned CPTAC3 1daaf604-418b-4ba3-af3f-4fcd43344569 67f6b7ed5d91ec3a7deb5d6970a3e7ea {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01080.WXS.N.hg38 C3N-01080 CCRCC WXS blood_normal CPT0211420002 66196c34-bbe5-404d-8793-db1494f8c66b_wxs_gdc_realn.bam 40194707885 BAM harmonized CPTAC3 ff79e6b5-8313-42e5-8676-33d34760951d 0fde5994b59e3f9cc124f81c132c4d81 {"aliquot_tag": "ALQ_53b30c3b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01080.WXS.T C3N-01080 CCRCC WXS tumor CPT0211320006 CPT0211320006.WholeExome.RP-1303.bam 18823924614 BAM submitted_aligned CPTAC3 018f7eb6-731c-4e24-bbdb-7aac2d231802 b285562a6a55ca6a4f7ce20dc85cb408 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01080.WXS.T.hg38 C3N-01080 CCRCC WXS tumor CPT0211320006 ebe8f72f-4900-4bf0-a1ec-b1b1e8c9c727_wxs_gdc_realn.bam 26620228852 BAM harmonized CPTAC3 c9c86de8-6806-4c9b-a0e3-19f90102ca31 9b6c7fa5a69f3a823555c943d9188cb5 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.MethArray.Green.A C3N-01081 CCRCC Methylation_Array tissue_normal CPT0211520006 204930640065_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b8ac4426-bc6a-4463-bd66-e63047f4a499 a210fca4ffb030fe1737cd4350539451 {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.MethArray.Green.T C3N-01081 CCRCC Methylation_Array tumor CPT0211500006 203271740119_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 40a995b2-d179-4f5d-afe3-305840515b5a 945511761c6856a539f0c26e4f20e989 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.MethArray.Red.A C3N-01081 CCRCC Methylation_Array tissue_normal CPT0211520006 204930640065_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 34ef2a30-267c-4276-b23f-2a9020fe17cd b059dc6f4b6d95e570e883cac0346cfa {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.MethArray.Red.T C3N-01081 CCRCC Methylation_Array tumor CPT0211500006 203271740119_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 73004f69-3360-4f9d-90dd-2a76038201d6 730b278c8833c9d90f56a92c046408a8 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.miRNA-Seq.A.hg38 C3N-01081 CCRCC miRNA-Seq tissue_normal CPT0211520009 5f6d21d9-75ca-4759-a6f1-5cd728f9b856_mirnaseq_gdc_realn.bam 271158565 BAM harmonized CPTAC3 d6f71cb6-d957-4b58-8bc2-91b3f2c33c50 9b8163869ae4d9a3bfe5f78499bcc56d {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.miRNA-Seq.S11_L003_R1.A C3N-01081 CCRCC miRNA-Seq tissue_normal CPT0211520009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTCAGA_S11_L003_R1_001.unaln.bam 248505451 BAM S11_L003_R1 submitted_unaligned CPTAC3 9684f524-f208-4a16-9bdd-4fedc05e8bb4 85b2ba1d769ab5b8509b828ffbd1d424 {"aliquot_tag": "ALQ_f3d0616", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.miRNA-Seq.S26_L002_R1.T C3N-01081 CCRCC miRNA-Seq tumor CPT0211500009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGTAGC_S26_L002_R1_001.unaln.bam 294930222 BAM S26_L002_R1 submitted_unaligned CPTAC3 3451ff46-b65a-49af-9d41-d6b60b18455d 33d25276a97bf99e1ba75886f6f8f877 {"aliquot_tag": "ALQ_75fd5576", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.miRNA-Seq.T.hg38 C3N-01081 CCRCC miRNA-Seq tumor CPT0211500009 9ce1fc0a-7325-458e-b820-a910196c1a40_mirnaseq_gdc_realn.bam 321075910 BAM harmonized CPTAC3 7cc077ec-c95b-4b47-aa3c-69fb02ed9f02 019ce8774c4fa3a3afce53bf45387dbd {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.RNA-Seq.chimeric.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.chimeric.gdc_realn.bam 45202239 BAM chimeric harmonized CPTAC3 8110fa83-039a-4994-95ac-1050d4d24bee 86fa59aacbec50a9a93fcaab46711094 {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.RNA-Seq.chimeric.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.chimeric.gdc_realn.bam 112390601 BAM chimeric harmonized CPTAC3 fbb0943b-f81f-446a-8244-217a67b8bd3a 2e71f80715636ed87d1d0c548f935c74 {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.RNA-Seq.genomic.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.genomic.gdc_realn.bam 8913352721 BAM genomic harmonized CPTAC3 b3ca2641-5c6d-4593-ab69-de2304a3b72a b645901121f95981af3d3a9fd5b14292 {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.RNA-Seq.genomic.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.genomic.gdc_realn.bam 9212493991 BAM genomic harmonized CPTAC3 4b81215d-21f8-40c9-ac75-f8c1f3fde6b6 8bb79d64fe6ae62d4af8bb14b9081b25 {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.RNA-Seq.S16_L004_R1.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R1_001.fastq.gz 4110484031 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 c096803d-1211-4ff6-9789-363c78938d50 e89b9a427be7af652412cc82c8724fba {"aliquot_tag": "ALQ_f3d0616", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.RNA-Seq.S16_L004_R2.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R2_001.fastq.gz 4001855477 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 41f22f79-9720-42e3-ba7e-396f98675542 cfa2ebb7a58bec4f171238e29d2f47a6 {"aliquot_tag": "ALQ_f3d0616", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.RNA-Seq.S4_L007_R1.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 3996736881 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 92e0b24e-3a04-4bce-9f43-d9abe7b03953 026da4fab9bb8a3258be1cf23fd76579 {"aliquot_tag": "ALQ_75fd5576", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.RNA-Seq.S4_L007_R2.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4406408914 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 52994f4c-cc76-44a6-a732-0c3f6aa8bc85 ffc1772ad781e2d174f928641ad037e9 {"aliquot_tag": "ALQ_75fd5576", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.RNA-Seq.transcriptome.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.transcriptome.gdc_realn.bam 9124929678 BAM transcriptome harmonized CPTAC3 5ac410a6-2956-42e1-b354-208d3c1b4434 4334510897eb3bc9981badfb670dd9c2 {"aliquot_tag": "ALQ_f3d0616", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.RNA-Seq.transcriptome.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.transcriptome.gdc_realn.bam 9313350035 BAM transcriptome harmonized CPTAC3 30c29831-b74a-490b-bbd5-d6f52a42339d 1c76fae12a0e326ab37d02d337d24012 {"aliquot_tag": "ALQ_75fd5576", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.WGS.N C3N-01081 CCRCC WGS blood_normal CPT0211600002 CPT0211600002.WholeGenome.RP-1303.bam 49737781821 BAM submitted_aligned CPTAC3 cde3b374-2a72-43b9-bf88-a4b1134ab056 3e8db787a0c4e0f88959ec4dc8b56199 {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01081.WGS.N.hg38 C3N-01081 CCRCC WGS blood_normal CPT0211600002 05e6699a-46ac-41e6-bac6-19c1138d4636_wgs_gdc_realn.bam 73794382846 BAM harmonized CPTAC3 3b05533b-8d12-4eed-b3ac-9a33d860340d 1104db018fd32d2cc9960025d0dcb67e {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01081.WGS.T C3N-01081 CCRCC WGS tumor CPT0211500006 CPT0211500006.WholeGenome.RP-1303.bam 62249511619 BAM submitted_aligned CPTAC3 d5c17ad3-a178-446e-84be-cda12dfd0e17 5f18c1e2a256db452230c8057ad4caa4 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.WGS.T C3N-01081 CCRCC WGS tumor CPT0211500006 CPT0211500006.WholeGenome.RP-2158.bam 21078135651 BAM submitted_aligned CPTAC3 07ff5254-4f83-4306-b657-5b2e0c0dda3b f502c3675022fc0070dd8cb4932ba9da {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.WGS.T.hg38 C3N-01081 CCRCC WGS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wgs_gdc_realn.bam 155131738524 BAM harmonized CPTAC3 337fa121-24be-47ee-bb31-4e7f0338e1e6 ee3991d028912f5793b299f52c396cca {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.WGS.T.hg38 C3N-01081 CCRCC WGS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wgs_gdc_realn.bam 88840459680 BAM harmonized CPTAC3 7c17d033-fe1b-43ca-ac52-78cbe64b9cab 6c9d7b26a6c6cc8e674109b5cfd8a3b9 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.WXS.A C3N-01081 CCRCC WXS tissue_normal CPT0211520006 CPT0211520006.WholeExome.RP-1303.bam 22660728697 BAM submitted_aligned CPTAC3 a9cffd30-089b-46dd-ba07-bc07c9eb8491 9862f307df0922c27c2560c21f6dd89f {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.WXS.A.hg38 C3N-01081 CCRCC WXS tissue_normal CPT0211520006 15e271d7-eeb1-458a-99ae-f0230f4646d2_wxs_gdc_realn.bam 30785130706 BAM harmonized CPTAC3 8286e58d-3bbe-47a9-a6ef-b515892beac8 b9854ac8dab638a3c886ecae902dc645 {"aliquot_tag": "ALQ_9f821b87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01081.WXS.N C3N-01081 CCRCC WXS blood_normal CPT0211600002 CPT0211600002.WholeExome.RP-1303.bam 30529847256 BAM submitted_aligned CPTAC3 9555ec07-d984-491d-9111-73f39e697182 46792b71a59828c7102c4a8007b51d9c {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01081.WXS.N.hg38 C3N-01081 CCRCC WXS blood_normal CPT0211600002 05e6699a-46ac-41e6-bac6-19c1138d4636_wxs_gdc_realn.bam 41939011400 BAM harmonized CPTAC3 70984b24-8023-4db5-a258-288272b5c8d7 17500637b300bf2192ffd3a90a33a266 {"aliquot_tag": "ALQ_64bbfe50", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01081.WXS.T C3N-01081 CCRCC WXS tumor CPT0211500006 CPT0211500006.WholeExome.RP-1303.bam 30082446956 BAM submitted_aligned CPTAC3 7ea89db4-cc8f-4499-b831-48a58004fa2e 5ba18b3e534602deec6cde5fb189c0a1 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01081.WXS.T.hg38 C3N-01081 CCRCC WXS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wxs_gdc_realn.bam 41240890995 BAM harmonized CPTAC3 aea7f0fb-6979-48a4-a9e1-90387dd30331 2a1c1e213df71a08b56e4b98eb0533c0 {"aliquot_tag": "ALQ_e54248e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.MethArray.Green.A C3N-01082 CCRCC Methylation_Array tissue_normal CPT0211700006 204930640051_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 84529527-7768-4e74-ac97-a4c7cb05f9ba fa8ee0f55f74a8a28e255d7c21c123ea {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.MethArray.Green.T C3N-01082 CCRCC Methylation_Array tumor CPT0211680006 203219670150_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 46b1edf4-4937-4370-9296-febf50f74ea0 7293bd1126fd8df9725dbc55492cf99e {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.MethArray.Red.A C3N-01082 CCRCC Methylation_Array tissue_normal CPT0211700006 204930640051_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 0d7ed8ad-1968-4db4-b77d-e8ffd28d0b5c 2d9a7d1c88c44cb71e2902e16149d45f {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.MethArray.Red.T C3N-01082 CCRCC Methylation_Array tumor CPT0211680006 203219670150_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 d42c9cae-3a20-4730-b7cb-f0c85a8fa419 7a381a055c23a332d2277854c8bbd43b {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.miRNA-Seq.A.hg38 C3N-01082 CCRCC miRNA-Seq tissue_normal CPT0211700009 84ce8f2b-8dd9-435b-9888-baace6bd1649_mirnaseq_gdc_realn.bam 218037366 BAM harmonized CPTAC3 48d2c776-8d9a-4e2c-9be8-c4ac1e74a772 d87e1713f9b2c0b1b0cd40a78da14e7d {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.miRNA-Seq.S10_L003_R1.A C3N-01082 CCRCC miRNA-Seq tissue_normal CPT0211700009 190206_UNC31-K00269_0191_AH2WY5BBXY_GACGAC_S10_L003_R1_001.unaln.bam 200829131 BAM S10_L003_R1 submitted_unaligned CPTAC3 ff04c7e5-de58-4a81-8aa5-01c08a5ce7cf 536e54f852e48030eee28f6a53a9b18f {"aliquot_tag": "ALQ_3835f47d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.miRNA-Seq.S2_L001_R1.T C3N-01082 CCRCC miRNA-Seq tumor CPT0211680009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L001_R1_001.unaln.bam 157805673 BAM S2_L001_R1 submitted_unaligned CPTAC3 d03bff6b-e061-4f92-9a82-72966ced4031 7a2ce55313e86b41e64e29554821c76f {"aliquot_tag": "ALQ_c3196c19", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.miRNA-Seq.T.hg38 C3N-01082 CCRCC miRNA-Seq tumor CPT0211680009 58adfa5b-033f-4dce-9002-ed76c2894859_mirnaseq_gdc_realn.bam 170978644 BAM harmonized CPTAC3 11ef1da4-0930-4d0c-ad22-81d23c163f21 50e965c626e0a0705578860378c78c66 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.RNA-Seq.chimeric.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.chimeric.gdc_realn.bam 57444253 BAM chimeric harmonized CPTAC3 f8109f1a-1ea8-4901-b3ac-1ad60badcf51 acc280053dc4006163027a55256a6cca {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.RNA-Seq.chimeric.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.chimeric.gdc_realn.bam 274225612 BAM chimeric harmonized CPTAC3 a15ac72b-7dc3-4c04-bdb0-33ec70fa74f2 09ce115ebff584c8f25ec6a29dc78109 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.RNA-Seq.genomic.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.genomic.gdc_realn.bam 11575972623 BAM genomic harmonized CPTAC3 1fcea42a-bbeb-4aa7-8aa1-2bab1d148373 650374fab7ed327e667a9caeea27b427 {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.RNA-Seq.genomic.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.genomic.gdc_realn.bam 6985800333 BAM genomic harmonized CPTAC3 977e48d7-a331-4f66-8ef6-72dcea3a516e 9fee51e586f779cf2ee757ec1a085841 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.RNA-Seq.S18_L005_R1.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3139277370 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 4843ac3c-7ff4-4b51-9c10-796827bd15f5 5714c1195fd016bb516c22bd24fc5884 {"aliquot_tag": "ALQ_c3196c19", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.RNA-Seq.S18_L005_R2.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3334223376 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 3ebde143-6c0a-474e-8d54-cb149cdd5a2e caab69140cf3453d14d5809b4e94d870 {"aliquot_tag": "ALQ_c3196c19", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.RNA-Seq.S3_L005_R1.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R1_001.fastq.gz 5571935814 FASTQ S3_L005_R1 submitted_unaligned CPTAC3 2754e1db-72ff-4296-930c-a14dcae963e4 a52baf2db4802302bab2eeb6ea8db1ff {"aliquot_tag": "ALQ_3835f47d", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.RNA-Seq.S3_L005_R2.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R2_001.fastq.gz 6102461447 FASTQ S3_L005_R2 submitted_unaligned CPTAC3 57e38ac6-2520-4c34-9158-9ce202821d6d 5e8079213872e5221be63e07dfc11ae1 {"aliquot_tag": "ALQ_3835f47d", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.RNA-Seq.transcriptome.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.transcriptome.gdc_realn.bam 15191498796 BAM transcriptome harmonized CPTAC3 19be275f-b951-4230-ba30-41c0726ce07e b8dfd0f1eacfb725af914f0fabe793fe {"aliquot_tag": "ALQ_3835f47d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.RNA-Seq.transcriptome.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.transcriptome.gdc_realn.bam 8550318272 BAM transcriptome harmonized CPTAC3 de4ed059-2371-4f8a-bd2f-6f114dd5bf46 2d4abe9e7b11e2f1b4504a556ee7cde0 {"aliquot_tag": "ALQ_c3196c19", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.WGS.N C3N-01082 CCRCC WGS blood_normal CPT0211780002 CPT0211780002.WholeGenome.RP-1303.bam 78259968806 BAM submitted_aligned CPTAC3 8383f338-dd01-4c0a-bfa8-cb40606dc877 ee456a76e6c8351810f6ce49349e1f7a {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01082.WGS.N.hg38 C3N-01082 CCRCC WGS blood_normal CPT0211780002 5aa47d8e-1a69-4295-92a2-c4b686860c17_wgs_gdc_realn.bam 114860618076 BAM harmonized CPTAC3 126b4110-04ef-4865-8609-8f0594577538 7e7ede475a89a1ab820d3222c0d7c2d0 {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01082.WGS.T C3N-01082 CCRCC WGS tumor CPT0211680006 CPT0211680006.WholeGenome.RP-1303.bam 52755891542 BAM submitted_aligned CPTAC3 3dadac4e-194b-467d-9853-f17447d1ad1c b9a439197e6e6070539a7442fd126fc1 {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.WGS.T.hg38 C3N-01082 CCRCC WGS tumor CPT0211680006 6abb6a62-72f7-4b24-9e60-787c04565777_wgs_gdc_realn.bam 76183867987 BAM harmonized CPTAC3 dbc074c8-6893-457b-ad65-6239fdccdd08 6226591bbbef18a1fbbcbc1ed002cbf5 {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.WXS.A C3N-01082 CCRCC WXS tissue_normal CPT0211700006 CPT0211700006.WholeExome.RP-1303.bam 18988568325 BAM submitted_aligned CPTAC3 4a271983-21be-4d93-aa6a-4d4480e944ca 514d688739d5175a74b47754f41c8a6c {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.WXS.A.hg38 C3N-01082 CCRCC WXS tissue_normal CPT0211700006 b4222b72-97ba-40b9-9b01-0e0c245f164d_wxs_gdc_realn.bam 26627785670 BAM harmonized CPTAC3 a87ae380-49bb-4880-80b4-c9ea1906f4ac aa105ac0a4fad86cdc8699ebaa265f19 {"aliquot_tag": "ALQ_a88ae9ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01082.WXS.N C3N-01082 CCRCC WXS blood_normal CPT0211780002 CPT0211780002.WholeExome.RP-1303.bam 19162398500 BAM submitted_aligned CPTAC3 6d7077e4-6eb7-470e-9eb5-367d18224bf3 d55d7387570760f5640588b9d97685dd {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01082.WXS.N.hg38 C3N-01082 CCRCC WXS blood_normal CPT0211780002 5aa47d8e-1a69-4295-92a2-c4b686860c17_wxs_gdc_realn.bam 27474497734 BAM harmonized CPTAC3 9a6c539f-477a-4738-8091-6100da74c2ff 99c37d3a1a505a910d7d29200ddc55aa {"aliquot_tag": "ALQ_9f976634", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01082.WXS.T C3N-01082 CCRCC WXS tumor CPT0211680006 CPT0211680006.WholeExome.RP-1303.bam 28461391446 BAM submitted_aligned CPTAC3 96f4737d-3ee7-4229-921a-0a14a5cb10b3 02c0dc5e1c55a0589e2b8c98b79a5492 {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01082.WXS.T.hg38 C3N-01082 CCRCC WXS tumor CPT0211680006 6abb6a62-72f7-4b24-9e60-787c04565777_wxs_gdc_realn.bam 39162049352 BAM harmonized CPTAC3 5c8d9e13-8a17-434b-b14d-dc6d55cbf890 ece194a183f2f3de61650ee0968db54a {"aliquot_tag": "ALQ_53a67188", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.MethArray.Green.A C3N-01083 CCRCC Methylation_Array tissue_normal CPT0211880006 204930640108_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 31b53fd9-8b42-41ac-9ef3-54efb6c1730d c066b76c3f2191ffa58ff035e8b9d09c {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.MethArray.Green.T C3N-01083 CCRCC Methylation_Array tumor CPT0211850006 203271740111_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c2126d86-fc9e-4df6-ad1c-2356e9c7d845 084d737301182e17ff6d96aa5c9f3214 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.MethArray.Red.A C3N-01083 CCRCC Methylation_Array tissue_normal CPT0211880006 204930640108_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 a3f3afe7-dd94-43fa-8fc5-c7069feac76a 3ff373aee69a3da47b3f00416900dced {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.MethArray.Red.T C3N-01083 CCRCC Methylation_Array tumor CPT0211850006 203271740111_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 9701f000-e90a-400f-b822-6a861736b613 d5e713d4240b7ae63805607305902cf5 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.miRNA-Seq.A.hg38 C3N-01083 CCRCC miRNA-Seq tissue_normal CPT0211880009 0a5a900b-435e-472c-8cdb-9641243d80ae_mirnaseq_gdc_realn.bam 189129134 BAM harmonized CPTAC3 61210e7b-0102-476a-b348-76d840e2180d 6a11d09551366d6b6cea761c37bcd27b {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.miRNA-Seq.S24_L001_R1.T C3N-01083 CCRCC miRNA-Seq tumor CPT0211850009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATTCCT_S24_L001_R1_001.unaln.bam 242398485 BAM S24_L001_R1 submitted_unaligned CPTAC3 e743e0ca-610a-4be7-845d-eda12bd9fc00 d41b40f4421e74ba6cc488ff176d67fd {"aliquot_tag": "ALQ_183c9d8", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.miRNA-Seq.S9_L003_R1.A C3N-01083 CCRCC miRNA-Seq tissue_normal CPT0211880009 190206_UNC31-K00269_0191_AH2WY5BBXY_TAATCG_S9_L003_R1_001.unaln.bam 173504791 BAM S9_L003_R1 submitted_unaligned CPTAC3 02bcc0c9-5df9-4548-8a43-77905dcddd33 f6d9538414519dd7bd58a5814e8709bd {"aliquot_tag": "ALQ_f9130d69", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.miRNA-Seq.T.hg38 C3N-01083 CCRCC miRNA-Seq tumor CPT0211850009 57c9dd9a-30bc-49d8-8ba8-aea243bf6e46_mirnaseq_gdc_realn.bam 266600403 BAM harmonized CPTAC3 f1a1f788-fc1a-4117-9253-b1992a0df8af e14a277cf12a638fe60b77a53043ce17 {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.RNA-Seq.chimeric.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.chimeric.gdc_realn.bam 32818934 BAM chimeric harmonized CPTAC3 48f0dfd2-23e3-40b5-ad6f-f4579c35e8b0 6b470c7947f42e0f103e8a782b15002b {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.RNA-Seq.chimeric.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.chimeric.gdc_realn.bam 243856773 BAM chimeric harmonized CPTAC3 67f0e29b-0cb6-4c63-9eb7-9152edeb5b32 5b6bca480be59518625bf49f11c4ec73 {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.RNA-Seq.genomic.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.genomic.gdc_realn.bam 7387170692 BAM genomic harmonized CPTAC3 99f7cc5a-aa02-434c-9628-1c69fe73b2c3 d382fe7b5c8059d82d849c199ba09c79 {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.RNA-Seq.genomic.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.genomic.gdc_realn.bam 6459291032 BAM genomic harmonized CPTAC3 21a8dd1d-8468-47fe-ab0e-14ed4a7550cf 102a058ecea3783f807c861bbfe924cc {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.RNA-Seq.S17_L005_R1.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2749665019 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 b9bc12dd-b11a-47af-a68b-b3ba1a8b660c a6b7fc5544a50ff97000cccd6f5c01f6 {"aliquot_tag": "ALQ_183c9d8", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.RNA-Seq.S17_L005_R2.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 2940592823 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 1ce0132c-de61-4591-81a6-3eb7f6db53e7 1ad734b8bc95bc41c3dafba8b42602ce {"aliquot_tag": "ALQ_183c9d8", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.RNA-Seq.S2_L005_R1.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R1_001.fastq.gz 3459021809 FASTQ S2_L005_R1 submitted_unaligned CPTAC3 7dd921a9-9aa7-4f97-8309-c498cc9ea467 21f8a1d72a080c939423e80fbc58219c {"aliquot_tag": "ALQ_f9130d69", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.RNA-Seq.S2_L005_R2.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R2_001.fastq.gz 3403075435 FASTQ S2_L005_R2 submitted_unaligned CPTAC3 304830a4-c6dc-480d-9183-eb79fc6a2111 d639563d622c3eacbe0e31e0c66f2fd7 {"aliquot_tag": "ALQ_f9130d69", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.RNA-Seq.transcriptome.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.transcriptome.gdc_realn.bam 8484376806 BAM transcriptome harmonized CPTAC3 4bf91909-d1b4-4a75-9226-5a114bd7045b 32afb8e485265e63c677cfa9ead66d92 {"aliquot_tag": "ALQ_f9130d69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.RNA-Seq.transcriptome.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.transcriptome.gdc_realn.bam 7624292200 BAM transcriptome harmonized CPTAC3 f1dc6799-6a0d-41ad-88f7-32010cb678ad b686a85459d793bf6cda77d27aa36586 {"aliquot_tag": "ALQ_183c9d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.WGS.N C3N-01083 CCRCC WGS blood_normal CPT0211960002 CPT0211960002.WholeGenome.RP-1303.bam 55433493128 BAM submitted_aligned CPTAC3 d5c7e4f6-73a2-47db-bda5-53b3bbac47ea 749789f6104577b7b5d2ab2ca71eb158 {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01083.WGS.N.hg38 C3N-01083 CCRCC WGS blood_normal CPT0211960002 61676e90-2ece-4098-9798-07f5a2357b7d_wgs_gdc_realn.bam 80670204882 BAM harmonized CPTAC3 35f4edfd-953d-4f8b-81e6-5c17288d14b1 6dfc38c04a630080e852ad97e8f18dc2 {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01083.WGS.T C3N-01083 CCRCC WGS tumor CPT0211850006 CPT0211850006.WholeGenome.RP-1303.bam 57145565058 BAM submitted_aligned CPTAC3 5b683651-6bbf-4669-95d3-7fc2079503ec d343597745e0fd153c56dc1f9a2c9063 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.WGS.T.hg38 C3N-01083 CCRCC WGS tumor CPT0211850006 cb16c4da-b3ec-4b40-9b71-a5d1be6c03a3_wgs_gdc_realn.bam 83958881153 BAM harmonized CPTAC3 b0664abf-9a28-4da9-9b8b-c8d628467c79 72461f146950ce6a0d18fa84141d55d0 {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.WXS.A C3N-01083 CCRCC WXS tissue_normal CPT0211880006 CPT0211880006.WholeExome.RP-1303.bam 17591413595 BAM submitted_aligned CPTAC3 6aa4e783-1c09-4965-8184-6b8b9fd48d57 b290449afc03d783124bbaf2ca44d22e {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.WXS.A.hg38 C3N-01083 CCRCC WXS tissue_normal CPT0211880006 b7cb41e7-ec2f-4634-b9ba-9b27420a7565_wxs_gdc_realn.bam 24626675587 BAM harmonized CPTAC3 7156eadf-1e5e-4973-8f39-854f8e292841 ea0b85f551f1e4752d836e5dae55f1bd {"aliquot_tag": "ALQ_69ac10f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01083.WXS.N C3N-01083 CCRCC WXS blood_normal CPT0211960002 CPT0211960002.WholeExome.RP-1303.bam 29994231825 BAM submitted_aligned CPTAC3 fd7d48bf-4202-46ee-923c-3db580b2bd76 26e73e13f9e78f693410f23c6e4ae1fa {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01083.WXS.N.hg38 C3N-01083 CCRCC WXS blood_normal CPT0211960002 61676e90-2ece-4098-9798-07f5a2357b7d_wxs_gdc_realn.bam 41142568288 BAM harmonized CPTAC3 d5c346e9-a9d4-48c8-b1cb-cf84369680a8 b575e7bd0523fba765b1854cf4e099f3 {"aliquot_tag": "ALQ_1aadb925", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01083.WXS.T C3N-01083 CCRCC WXS tumor CPT0211850006 CPT0211850006.WholeExome.RP-1303.bam 24548227460 BAM submitted_aligned CPTAC3 03481f54-9ca0-4702-8680-dfb7a17e5f07 9365fadd240b9e2e20f24a9aefb30ced {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01083.WXS.T.hg38 C3N-01083 CCRCC WXS tumor CPT0211850006 cb16c4da-b3ec-4b40-9b71-a5d1be6c03a3_wxs_gdc_realn.bam 33907273806 BAM harmonized CPTAC3 0c017e19-803f-445a-8068-bb43d457b9fd 35394d7bda8940086c81f2bf303c9f7f {"aliquot_tag": "ALQ_913cd449", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.MethArray.Green.A C3N-01085 CCRCC Methylation_Array tissue_normal CPT0212240006 204930640061_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 240778ae-8477-4f38-b79a-d06a7ed25ee7 7fb22cbf09653388d8eca03bc5c2128c {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.MethArray.Green.T C3N-01085 CCRCC Methylation_Array tumor CPT0212210006 203219650127_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b15c208c-fc27-41b4-bd38-f80f79eabbc7 7e6228b938c5859ad84117602c1d45a5 {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.MethArray.Red.A C3N-01085 CCRCC Methylation_Array tissue_normal CPT0212240006 204930640061_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 91d266cc-c11b-4e97-aa7d-19923270a658 654425c062a404ee7a8103fc156a6356 {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.MethArray.Red.T C3N-01085 CCRCC Methylation_Array tumor CPT0212210006 203219650127_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 5bdb194e-52a6-4711-bdc6-49eee02aab80 a42189921879c5a4e63efde5077a907b {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.miRNA-Seq.A.hg38 C3N-01085 CCRCC miRNA-Seq tissue_normal CPT0212240009 4f146110-d652-40c3-a26f-1b500b70a2ab_mirnaseq_gdc_realn.bam 176491029 BAM harmonized CPTAC3 72d34cc1-0aa7-453e-b4af-0fa6c4bb1134 b1b7cd2aba50595401039aebd7946d73 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.miRNA-Seq.S23_L001_R1.T C3N-01085 CCRCC miRNA-Seq tumor CPT0212210009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAAAAG_S23_L001_R1_001.unaln.bam 227694911 BAM S23_L001_R1 submitted_unaligned CPTAC3 13fd13ac-5161-44d9-8b5a-f6f26e7e6a40 dcd5332ccd3e276b360198383b3b0cb9 {"aliquot_tag": "ALQ_647056e3", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.miRNA-Seq.S8_L003_R1.A C3N-01085 CCRCC miRNA-Seq tissue_normal CPT0212240009 190206_UNC31-K00269_0191_AH2WY5BBXY_TACAGC_S8_L003_R1_001.unaln.bam 161075679 BAM S8_L003_R1 submitted_unaligned CPTAC3 fbe89446-f3b4-45fe-b65f-ef175a34c4cb 06005365d919abfc55ca08163e425258 {"aliquot_tag": "ALQ_ac90d993", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.miRNA-Seq.T.hg38 C3N-01085 CCRCC miRNA-Seq tumor CPT0212210009 c52b5677-535e-4000-a534-58a0a32bd7c7_mirnaseq_gdc_realn.bam 250608573 BAM harmonized CPTAC3 87a729a9-f581-4c5e-a3c0-251ea53710d9 cba3dcc5b532d011d21e785564ff0fe3 {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.RNA-Seq.chimeric.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.chimeric.gdc_realn.bam 36291074 BAM chimeric harmonized CPTAC3 fa13fa79-d2c1-431f-8c6e-06a07bb0821e 2af2f4bf5abb29a6726581121386a925 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.RNA-Seq.chimeric.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.chimeric.gdc_realn.bam 285107022 BAM chimeric harmonized CPTAC3 f08d30c8-e951-4ecf-a59e-d08fc24ee33c 3faebb17446edd0b0af55c19b0bb4a03 {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.RNA-Seq.genomic.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.genomic.gdc_realn.bam 8761229049 BAM genomic harmonized CPTAC3 7a566ffb-01be-482b-89b8-62283d6c6478 8f41762ac2d5c467757b3fe1854f6a23 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.RNA-Seq.genomic.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.genomic.gdc_realn.bam 6035087191 BAM genomic harmonized CPTAC3 000812b7-592a-4dcd-abd6-17d7f4a37089 71b5797865e63fffa5c4877917ed9ade {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.RNA-Seq.S1_L005_R1.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R1_001.fastq.gz 3864947344 FASTQ S1_L005_R1 submitted_unaligned CPTAC3 1009564e-d748-4f17-9948-d10aa72471ec 66222d6b354e253c4adf20f0b1751bb4 {"aliquot_tag": "ALQ_ac90d993", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.RNA-Seq.S1_L005_R2.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R2_001.fastq.gz 4137290608 FASTQ S1_L005_R2 submitted_unaligned CPTAC3 2adaedce-781e-4a43-ba97-53e645f5634d 4e7f4f83934c5e24afa61c0c658f2e2b {"aliquot_tag": "ALQ_ac90d993", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.RNA-Seq.S20_L005_R1.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R1_001.fastq.gz 2683352550 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 1b035c9f-01cb-4c83-845a-7e5b6eafebdd 9bfe476acc01062cfda36f03eb933d23 {"aliquot_tag": "ALQ_647056e3", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.RNA-Seq.S20_L005_R2.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R2_001.fastq.gz 2785346721 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 b391a168-fd51-4373-8eea-a3d4500e89ea 5f716a3973746c517678da117577c7c0 {"aliquot_tag": "ALQ_647056e3", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.RNA-Seq.transcriptome.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.transcriptome.gdc_realn.bam 8660626096 BAM transcriptome harmonized CPTAC3 26b4c92e-28a5-411f-aa13-7cf12136ae43 b039a044c47bd118b66fbccda844e1c5 {"aliquot_tag": "ALQ_ac90d993", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.RNA-Seq.transcriptome.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.transcriptome.gdc_realn.bam 6921361338 BAM transcriptome harmonized CPTAC3 5a97845e-43e8-4114-b792-3d6d97cba79e fe2302383a5817d7339b7f3b33630033 {"aliquot_tag": "ALQ_647056e3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.WGS.N C3N-01085 CCRCC WGS blood_normal CPT0212320002 CPT0212320002.WholeGenome.RP-1303.bam 88217023350 BAM submitted_aligned CPTAC3 43a3ca27-112f-4cd7-83eb-f505c632f9cf 7a7c794450531ca08ba00071c811ade8 {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01085.WGS.N.hg38 C3N-01085 CCRCC WGS blood_normal CPT0212320002 8cdd183e-b85b-4469-8c57-d4f836843094_wgs_gdc_realn.bam 127091492849 BAM harmonized CPTAC3 e4c3ec04-3071-4167-9a20-2df72f78f84d 2a9b7106d46ffaddb54b8ebcd5d95cd0 {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01085.WGS.T C3N-01085 CCRCC WGS tumor CPT0212210006 CPT0212210006.WholeGenome.RP-1303.bam 58539445716 BAM submitted_aligned CPTAC3 7d628f1d-4b30-439d-b947-0358151aaf0e 0cceb995b4e1e9093ecd9496095d4e64 {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.WGS.T.hg38 C3N-01085 CCRCC WGS tumor CPT0212210006 79633993-7e7d-44f6-9209-ed67c5c43528_wgs_gdc_realn.bam 85224647356 BAM harmonized CPTAC3 d163e312-910a-4b38-bf44-58070356b730 c32d4c367c056dbc424056d506207a2a {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.WXS.A C3N-01085 CCRCC WXS tissue_normal CPT0212240006 CPT0212240006.WholeExome.RP-1303.bam 16680536293 BAM submitted_aligned CPTAC3 fe57466b-db95-409e-b1b9-bb94c930cc3b fbdf499844726f55efb80db5925ccc88 {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.WXS.A.hg38 C3N-01085 CCRCC WXS tissue_normal CPT0212240006 184bd502-46d4-4031-bf16-f7f520ab9433_wxs_gdc_realn.bam 23567433371 BAM harmonized CPTAC3 05704de4-e7ef-4f0e-9c84-e7cd9d563d8b da282a72b8a21271c39bb05344fd24fe {"aliquot_tag": "ALQ_3c2fc402", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01085.WXS.N C3N-01085 CCRCC WXS blood_normal CPT0212320002 CPT0212320002.WholeExome.RP-1303.bam 29172907805 BAM submitted_aligned CPTAC3 207c63be-2973-463f-aa00-d4a9ce091f11 10feaf960dbe2f76770aa1c2fc483f65 {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01085.WXS.N.hg38 C3N-01085 CCRCC WXS blood_normal CPT0212320002 8cdd183e-b85b-4469-8c57-d4f836843094_wxs_gdc_realn.bam 39838816573 BAM harmonized CPTAC3 2682849b-94f8-4522-b0b0-c722d5c64174 e0e5356565a8c4f2f4aa1833c7ce336e {"aliquot_tag": "ALQ_7f5e261e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01085.WXS.T C3N-01085 CCRCC WXS tumor CPT0212210006 CPT0212210006.WholeExome.RP-1303.bam 25507551368 BAM submitted_aligned CPTAC3 9849c47d-781f-464b-b423-576f3e84780b ef42838c16c838f9d0a3179bf7889d5a {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01085.WXS.T.hg38 C3N-01085 CCRCC WXS tumor CPT0212210006 79633993-7e7d-44f6-9209-ed67c5c43528_wxs_gdc_realn.bam 35863934611 BAM harmonized CPTAC3 dd1626be-3ae1-4c42-8cce-79c183507854 f47a25d0672867c12d8e57cbd551973e {"aliquot_tag": "ALQ_f4cf4b72", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.MethArray.Green.A C3N-01086 CCRCC Methylation_Array tissue_normal CPT0212420006 204930640051_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7248b4b2-d907-4b0e-9618-359a81bf9d38 31feac955515777e79460a5ca7c61ebf {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.MethArray.Green.T C3N-01086 CCRCC Methylation_Array tumor CPT0212410006 203219650004_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f3d938ec-e405-4450-ae97-46d15fa3b8e1 d4c7a069d2aa270caf39d79ca5484850 {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.MethArray.Red.A C3N-01086 CCRCC Methylation_Array tissue_normal CPT0212420006 204930640051_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 b86fd210-91e6-4e29-b618-ce1fa671022e b26f93886d7a7cbeac09dca25a974eed {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.MethArray.Red.T C3N-01086 CCRCC Methylation_Array tumor CPT0212410006 203219650004_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 49f5ed34-8672-41da-866c-a226f3a107b9 b0360a3a0a550e5f3d87a68868bb224d {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.miRNA-Seq.A.hg38 C3N-01086 CCRCC miRNA-Seq tissue_normal CPT0212420009 896a4df2-ca3d-4ea1-a921-329fb5bf549a_mirnaseq_gdc_realn.bam 236410609 BAM harmonized CPTAC3 bf10260a-451b-4075-a931-69a2353fc3d0 e9eb2a6b42f61306c0dbf68127fa8d1a {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.miRNA-Seq.S17_L001_R1.T C3N-01086 CCRCC miRNA-Seq tumor CPT0212410008 190206_UNC31-K00269_0191_AH2WY5BBXY_CATGGC_S17_L001_R1_001.unaln.bam 184611976 BAM S17_L001_R1 submitted_unaligned CPTAC3 f60eecbf-b0f1-4570-ae01-45d2021522a3 4cf526edc21e3e38c5875121e7c288ba {"aliquot_tag": "ALQ_c52e8568", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.miRNA-Seq.S7_L003_R1.A C3N-01086 CCRCC miRNA-Seq tissue_normal CPT0212420009 190206_UNC31-K00269_0191_AH2WY5BBXY_TATAAT_S7_L003_R1_001.unaln.bam 216672516 BAM S7_L003_R1 submitted_unaligned CPTAC3 78a56f38-a3b1-4960-9b8e-024c3ec0d3fe b05695f50671eab19dc2f8e6aa749d30 {"aliquot_tag": "ALQ_f589cf2e", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.miRNA-Seq.T.hg38 C3N-01086 CCRCC miRNA-Seq tumor CPT0212410008 cb0b8b80-85c8-4c03-ae89-99da840a8fe2_mirnaseq_gdc_realn.bam 206569427 BAM harmonized CPTAC3 51e488b2-e2d6-4606-bced-06b34be80ee8 922e86f4f413d57fd590dc3aba53c5f7 {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.RNA-Seq.chimeric.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.chimeric.gdc_realn.bam 30031390 BAM chimeric harmonized CPTAC3 60cb00b8-0139-470a-a902-8f0317083593 8116c41c76075580d56e031f7519c4b8 {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.RNA-Seq.chimeric.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.chimeric.gdc_realn.bam 183130078 BAM chimeric harmonized CPTAC3 ce05deb9-d362-48c4-83bd-76fb47931267 59fa34b9948abcc031c3588e2115f5f7 {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.RNA-Seq.genomic.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.genomic.gdc_realn.bam 7179809396 BAM genomic harmonized CPTAC3 c156e4e3-6d4d-4fa2-ae65-8eac5ed89e0b 9f808d5d065aa65666c5a0fec47d9132 {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.RNA-Seq.genomic.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.genomic.gdc_realn.bam 10150681237 BAM genomic harmonized CPTAC3 8e03080c-557b-4e2e-9178-232c9d151b77 370c41cea677f7a25bc54b9f4a118c97 {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.RNA-Seq.S3_L001_R1.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R1_001.fastq.gz 4691581606 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 ead9c882-8720-4aa4-8dbb-c89c306b5fc4 02724e38b012ed2f1c7ccc7e79e2c384 {"aliquot_tag": "ALQ_c52e8568", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.RNA-Seq.S3_L001_R2.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R2_001.fastq.gz 5214104365 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 545600d9-3d1f-41ad-a42d-f0190e1869ea e7dee640fdda06d006cb8302b5e7e630 {"aliquot_tag": "ALQ_c52e8568", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.RNA-Seq.S4_L005_R1.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3278264030 FASTQ S4_L005_R1 submitted_unaligned CPTAC3 5c4d6621-9a86-4233-9327-4c0620995734 987ccc48478a48d40db8dbf5d9eb9758 {"aliquot_tag": "ALQ_f589cf2e", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.RNA-Seq.S4_L005_R2.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 3536311156 FASTQ S4_L005_R2 submitted_unaligned CPTAC3 1760d6b5-d062-40c6-b9e2-dd8948acb602 9d92331e3baa78c6afcad72b39ba40af {"aliquot_tag": "ALQ_f589cf2e", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.RNA-Seq.transcriptome.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.transcriptome.gdc_realn.bam 8087077427 BAM transcriptome harmonized CPTAC3 c97d996e-36b1-42ad-8ebe-55c1e9f4b3d3 4d1fdf0ccfad13c17ac223553ef85147 {"aliquot_tag": "ALQ_f589cf2e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.RNA-Seq.transcriptome.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.transcriptome.gdc_realn.bam 11382550420 BAM transcriptome harmonized CPTAC3 83c89a5f-74bf-46c6-846f-02a839c11904 1ff163b66e4c3418d847b03e5b3bfdfd {"aliquot_tag": "ALQ_c52e8568", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.WGS.N C3N-01086 CCRCC WGS blood_normal CPT0212500002 CPT0212500002.WholeGenome.RP-1303.bam 54964361879 BAM submitted_aligned CPTAC3 79dd8e98-7745-4ef5-ad39-22b049d9c269 472450cd68d1bcb209a752d7eecafda6 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01086.WGS.N.hg38 C3N-01086 CCRCC WGS blood_normal CPT0212500002 c681e10a-745d-4cf3-8df2-620991d38e30_wgs_gdc_realn.bam 80918580844 BAM harmonized CPTAC3 fccaa724-9e43-4b29-a796-cc00b5453029 61a5fc4ed7d0fae16b1008c9d44fe199 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01086.WGS.T C3N-01086 CCRCC WGS tumor CPT0212410006 CPT0212410006.WholeGenome.RP-1303.bam 52045941324 BAM submitted_aligned CPTAC3 2f8342dd-d0d5-4dfd-afb6-bea9c6f01863 bb913c9533800d47407ce23cfa217d3e {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.WGS.T.hg38 C3N-01086 CCRCC WGS tumor CPT0212410006 c860018b-fb57-4dae-9864-f44a1deefd5d_wgs_gdc_realn.bam 77263322529 BAM harmonized CPTAC3 e220f7bd-ce37-49e1-a7de-457f19cff2cc 041dd901a8fefdd0c1556e0da50ca288 {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.WXS.A C3N-01086 CCRCC WXS tissue_normal CPT0212420006 CPT0212420006.WholeExome.RP-1303.bam 23881147088 BAM submitted_aligned CPTAC3 20b429ac-abd6-4eee-b98e-b09ade098b16 833b3f2f32dd4db68f08b2dcc0ba95dd {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.WXS.A.hg38 C3N-01086 CCRCC WXS tissue_normal CPT0212420006 3af2bdb8-2e45-447e-a02b-70f881cfc3e9_wxs_gdc_realn.bam 33359276974 BAM harmonized CPTAC3 231cf754-0757-4623-af3f-b833cebd35fb a36af11e086460c9c1d7b5e2ab396e82 {"aliquot_tag": "ALQ_6536d2bf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01086.WXS.N C3N-01086 CCRCC WXS blood_normal CPT0212500002 CPT0212500002.WholeExome.RP-1303.bam 26071460035 BAM submitted_aligned CPTAC3 a057b988-e617-4c06-8dfb-769f3b4f989f bc1f25b07b11d3149d8e2afd0681ea16 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01086.WXS.N.hg38 C3N-01086 CCRCC WXS blood_normal CPT0212500002 c681e10a-745d-4cf3-8df2-620991d38e30_wxs_gdc_realn.bam 35579355449 BAM harmonized CPTAC3 1dfa1480-cdbb-40a8-ae09-23d6b893f189 ec5ce01da97e7eccdee8035972515562 {"aliquot_tag": "ALQ_d3c79663", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01086.WXS.T C3N-01086 CCRCC WXS tumor CPT0212410006 CPT0212410006.WholeExome.RP-1303.bam 25370552707 BAM submitted_aligned CPTAC3 53538aea-a027-4996-a09a-11e5b66f0a77 48f1853db55cde5e52a330529322e70a {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01086.WXS.T.hg38 C3N-01086 CCRCC WXS tumor CPT0212410006 c860018b-fb57-4dae-9864-f44a1deefd5d_wxs_gdc_realn.bam 35617341241 BAM harmonized CPTAC3 4c944d70-9a89-4ac4-93d8-15d55095edb2 490940574d2198f7d072c95f60fce21b {"aliquot_tag": "ALQ_2296a86f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.MethArray.Green.A C3N-01088 CCRCC Methylation_Array tissue_normal CPT0212600006 204930640064_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9963ccce-04ce-4119-b979-7632527a2966 2e3a7cb1190977e1d0031d46c0b615fa {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.MethArray.Green.T C3N-01088 CCRCC Methylation_Array tumor CPT0212590006 203219650164_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 90224673-1b22-4207-ab4b-ba25909a4807 71978625680b57c95a3315c22f8163e9 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.MethArray.Red.A C3N-01088 CCRCC Methylation_Array tissue_normal CPT0212600006 204930640064_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 ae779cda-b9ba-4057-9600-5f8a7a301189 89d6a0b0a3c5df197b4e39c7ccdb91da {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.MethArray.Red.T C3N-01088 CCRCC Methylation_Array tumor CPT0212590006 203219650164_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 741fca1c-1ed0-45cb-a026-bedc54882d59 da5e394658a1205735960fe648e2913e {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.miRNA-Seq.A.hg38 C3N-01088 CCRCC miRNA-Seq tissue_normal CPT0212600009 613af411-fca7-4a15-8d88-b89e4c86ddcc_mirnaseq_gdc_realn.bam 227677399 BAM harmonized CPTAC3 5eaff31f-acfa-4726-bdff-4d26508ae6da 4d40e20f8154425752e87fe76b17183f {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.miRNA-Seq.S22_L001_R1.T C3N-01088 CCRCC miRNA-Seq tumor CPT0212590009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAACTA_S22_L001_R1_001.unaln.bam 204876617 BAM S22_L001_R1 submitted_unaligned CPTAC3 2501fa5d-250c-4bb4-9318-f08d639a8217 b330b938b10bf607e62d5f6a775e1362 {"aliquot_tag": "ALQ_49052d9a", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.miRNA-Seq.S6_L003_R1.A C3N-01088 CCRCC miRNA-Seq tissue_normal CPT0212600009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCATTC_S6_L003_R1_001.unaln.bam 207338174 BAM S6_L003_R1 submitted_unaligned CPTAC3 3f036bde-ac2d-4fad-a8db-e6e305d9a884 d0fbed4926b8ed24826726e7384a2ec2 {"aliquot_tag": "ALQ_c2813d45", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.miRNA-Seq.T.hg38 C3N-01088 CCRCC miRNA-Seq tumor CPT0212590009 82202ca4-ba36-4f26-b2b0-63af398bd4fd_mirnaseq_gdc_realn.bam 225953614 BAM harmonized CPTAC3 e240524b-338a-4c20-81a6-e598c048ced3 3a1a4c7ce9c17789ca29226ae0ad167e {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.RNA-Seq.chimeric.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.chimeric.gdc_realn.bam 45568023 BAM chimeric harmonized CPTAC3 df775deb-9412-42f9-bade-ba49b20170d9 846a750b8062e6d448ac79fe563cdfd5 {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.RNA-Seq.chimeric.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.chimeric.gdc_realn.bam 360623498 BAM chimeric harmonized CPTAC3 c69d391d-49b0-4a53-b909-bee135ad2f5d 8f1068958f3614c51deb33ff1f10c62d {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.RNA-Seq.genomic.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.genomic.gdc_realn.bam 9578137316 BAM genomic harmonized CPTAC3 b72ba7b0-95ec-46f0-839f-e9efe1cb252a 7313cd36fdf859e63b2a591ff905ffac {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.RNA-Seq.genomic.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.genomic.gdc_realn.bam 6767517474 BAM genomic harmonized CPTAC3 1d18d300-161e-4bbf-bb62-39e819ae1c57 d9a90f8b52ece7d404fd680e44695003 {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.RNA-Seq.S19_L006_R1.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R1_001.fastq.gz 4362840178 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 a2db1345-920d-4be9-9023-fbbe878c81f0 410c3d411af0dac7c5e7e9f9b63edba9 {"aliquot_tag": "ALQ_c2813d45", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.RNA-Seq.S19_L006_R2.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R2_001.fastq.gz 4868455888 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 73f8a436-c7c5-4ae4-9d1c-9c365166951b b3a908d217504842720faa76a940d86b {"aliquot_tag": "ALQ_c2813d45", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.RNA-Seq.S23_L006_R1.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3077185301 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 df9d1763-5eae-4b0f-9643-5ae242104401 46d1fa28f79684a90fa6b4d0fdf441a2 {"aliquot_tag": "ALQ_49052d9a", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.RNA-Seq.S23_L006_R2.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 3359103403 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 0b69c9a4-8a12-4af1-9887-f4517691a138 7edc3383d5fe533d9dab24038a22e154 {"aliquot_tag": "ALQ_49052d9a", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.RNA-Seq.transcriptome.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.transcriptome.gdc_realn.bam 11488220780 BAM transcriptome harmonized CPTAC3 dbd3333a-1c64-4fba-8aa6-961007e90b61 57e087e7a8a5a3a5ba2ec07e4ea5964c {"aliquot_tag": "ALQ_c2813d45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.RNA-Seq.transcriptome.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.transcriptome.gdc_realn.bam 7604247637 BAM transcriptome harmonized CPTAC3 94efa4c1-00fc-4aeb-b696-05d9aa77418c 7efe079a7e044ee387b59b0e7d6e8ece {"aliquot_tag": "ALQ_49052d9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.WGS.N C3N-01088 CCRCC WGS blood_normal CPT0212680002 CPT0212680002.WholeGenome.RP-1303.bam 56101950229 BAM submitted_aligned CPTAC3 e78aac01-42c7-4a6c-aeb4-608ed776b3a8 1a4e323ad3d18946f1753300b4fc8246 {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01088.WGS.N.hg38 C3N-01088 CCRCC WGS blood_normal CPT0212680002 48cb13a6-1357-49f8-9eec-d1e813225a06_wgs_gdc_realn.bam 81660921751 BAM harmonized CPTAC3 321eeb12-ed4c-42f6-b208-4d6266888bf8 c1e81ab09e2b8b2221f7a504948b1c57 {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01088.WGS.T C3N-01088 CCRCC WGS tumor CPT0212590006 CPT0212590006.WholeGenome.RP-1303.bam 67730311406 BAM submitted_aligned CPTAC3 a389eb11-e298-44dc-9893-81ec7b4310b2 1100f001912a631d45f7f539f6212e34 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.WGS.T.hg38 C3N-01088 CCRCC WGS tumor CPT0212590006 3519a00e-d979-41de-8534-7e141450783a_wgs_gdc_realn.bam 99610559668 BAM harmonized CPTAC3 e9768bbe-1d8e-42d5-a461-32f1f081ab46 e6f54ae15493b167ac0781bb2bbbbbc2 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.WXS.A C3N-01088 CCRCC WXS tissue_normal CPT0212600006 CPT0212600006.WholeExome.RP-1303.bam 18020381867 BAM submitted_aligned CPTAC3 e2b2eb1a-f8d5-4cf2-beab-90e0e42da200 8d8098b33849a63b3dc8e0aa3f249768 {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.WXS.A.hg38 C3N-01088 CCRCC WXS tissue_normal CPT0212600006 010d7f04-c113-4ded-9625-821ce71a1e30_wxs_gdc_realn.bam 25330949192 BAM harmonized CPTAC3 f5e78a48-55ea-437d-821c-457bd7318157 d5b1d2081139e9e479351609aa7059eb {"aliquot_tag": "ALQ_523e20d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01088.WXS.N C3N-01088 CCRCC WXS blood_normal CPT0212680002 CPT0212680002.WholeExome.RP-1303.bam 21314963812 BAM submitted_aligned CPTAC3 fd460d44-971b-4dc4-96aa-c9f373ad1005 245560ceb1f94fe49e6a8464290370bd {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01088.WXS.N.hg38 C3N-01088 CCRCC WXS blood_normal CPT0212680002 48cb13a6-1357-49f8-9eec-d1e813225a06_wxs_gdc_realn.bam 30107006487 BAM harmonized CPTAC3 90f220df-5d18-4979-addd-6ea88202fe29 ac213d6f9265367e6ca5d0ffd77319e9 {"aliquot_tag": "ALQ_6523af0c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01088.WXS.T C3N-01088 CCRCC WXS tumor CPT0212590006 CPT0212590006.WholeExome.RP-1303.bam 24417822584 BAM submitted_aligned CPTAC3 bd764f66-cfd9-4695-a884-61342815f079 58b8200c421ca24be30dad74371ee68d {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01088.WXS.T.hg38 C3N-01088 CCRCC WXS tumor CPT0212590006 3519a00e-d979-41de-8534-7e141450783a_wxs_gdc_realn.bam 34152745481 BAM harmonized CPTAC3 64fea596-14a1-4761-951f-81cd42f394a7 98382c99348c3cd5b0f48cc778f7ce09 {"aliquot_tag": "ALQ_d9ba300b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.MethArray.Green.A C3N-01090 CCRCC Methylation_Array tissue_normal CPT0212780006 204930630071_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 aad98026-c966-4b67-b756-acfac218b243 b6ba6e81bbd923dcde6ca8a92f4abc2d {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.MethArray.Green.T C3N-01090 CCRCC Methylation_Array tumor CPT0212770006 203219670150_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 78481920-fc90-482c-9554-2c6519340457 709c338660622d34c706c5f488a8e66b {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.MethArray.Red.A C3N-01090 CCRCC Methylation_Array tissue_normal CPT0212780006 204930630071_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 d424a0c9-9cea-4938-b33b-5c5c39293f8f 95137802ef8a6443b4f4f96fe546fea2 {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.MethArray.Red.T C3N-01090 CCRCC Methylation_Array tumor CPT0212770006 203219670150_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 66a1a8aa-392e-43a7-9b01-f25d98bdd14a 897d76176c6d9c580bfda85253329f83 {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.miRNA-Seq.A.hg38 C3N-01090 CCRCC miRNA-Seq tissue_normal CPT0212780009 54be5da6-8bf0-4a4e-b975-894783e15886_mirnaseq_gdc_realn.bam 224159387 BAM harmonized CPTAC3 e8b45cd9-4414-4c2b-95f6-166f420a8887 d935c8bf9ff288a02abb996711c5fe84 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.miRNA-Seq.S16_L001_R1.T C3N-01090 CCRCC miRNA-Seq tumor CPT0212770008 190206_UNC31-K00269_0191_AH2WY5BBXY_CATTTT_S16_L001_R1_001.unaln.bam 221569842 BAM S16_L001_R1 submitted_unaligned CPTAC3 f7343596-909c-4ef0-829e-f96c6bca564a 499e9079ddcb488773144e137f85f7ee {"aliquot_tag": "ALQ_ccfa0266", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.miRNA-Seq.S5_L003_R1.A C3N-01090 CCRCC miRNA-Seq tissue_normal CPT0212780009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCCCGA_S5_L003_R1_001.unaln.bam 204209004 BAM S5_L003_R1 submitted_unaligned CPTAC3 07106f40-3b48-4ef6-9996-29478fd44e01 17369fd5c6c736f65fd4bc181148a1b5 {"aliquot_tag": "ALQ_39ada521", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.miRNA-Seq.T.hg38 C3N-01090 CCRCC miRNA-Seq tumor CPT0212770008 299573a2-9698-4079-b29c-7b6af661fbb3_mirnaseq_gdc_realn.bam 251207990 BAM harmonized CPTAC3 6f8169e0-de19-4f4b-90ed-dca464173500 339305b2cf369f2dae9d660411adf710 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.RNA-Seq.chimeric.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.chimeric.gdc_realn.bam 46492762 BAM chimeric harmonized CPTAC3 540ffdfe-a8c9-4200-9b86-36c41acc94bd c7fef87e0dd1341de713202c1ac4d146 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.RNA-Seq.chimeric.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.chimeric.gdc_realn.bam 127856038 BAM chimeric harmonized CPTAC3 8284b05e-f0f8-49d0-a158-9fc56f702d22 da6750832beb45fcf2473724f8c7f896 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.RNA-Seq.genomic.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.genomic.gdc_realn.bam 10293774017 BAM genomic harmonized CPTAC3 f8010824-c532-45e6-9644-964d0fbcabee fdc62512c2ddf93340361ae967b085d1 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.RNA-Seq.genomic.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.genomic.gdc_realn.bam 8318230189 BAM genomic harmonized CPTAC3 80175803-7d71-401f-886d-aacc931a8cb0 4362508d8e28051c3a0c2779e372ab51 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.RNA-Seq.S18_L006_R1.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R1_001.fastq.gz 4807323085 FASTQ S18_L006_R1 submitted_unaligned CPTAC3 80cdb882-6cb5-46f6-9c86-a3b364affdc0 5d87b051ad8014795f5d1d91c33fbbae {"aliquot_tag": "ALQ_39ada521", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.RNA-Seq.S18_L006_R2.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R2_001.fastq.gz 5300466590 FASTQ S18_L006_R2 submitted_unaligned CPTAC3 3d92f34b-5ccf-419a-be06-ab39ca23477e f43b6fffd63f4112c23c4e0ef30b906d {"aliquot_tag": "ALQ_39ada521", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.RNA-Seq.S1_L001_R1.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3631989786 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 7e44360b-cc44-40ac-ae12-c22720689822 bd1054992f7134e190808b121290cd55 {"aliquot_tag": "ALQ_ccfa0266", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.RNA-Seq.S1_L001_R2.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4230805361 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 fdb86b39-7ebe-491a-a788-103845da6f4f 9d42ecf9c456d64efbb2dc79e0d73cae {"aliquot_tag": "ALQ_ccfa0266", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.RNA-Seq.transcriptome.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.transcriptome.gdc_realn.bam 12074918202 BAM transcriptome harmonized CPTAC3 8b4c9504-0632-431c-9a48-e8fa7ec11d70 0f87dbf6fa019cc00752a340c8d4d195 {"aliquot_tag": "ALQ_39ada521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.RNA-Seq.transcriptome.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.transcriptome.gdc_realn.bam 9604631655 BAM transcriptome harmonized CPTAC3 e5216861-0b3b-41ec-9ae9-3ab2cfa7b144 23dd8a62825bb256ca8775f0d5634872 {"aliquot_tag": "ALQ_ccfa0266", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.WGS.A C3N-01090 CCRCC WGS tissue_normal CPT0212780006 CPT0212780006.WholeGenome.RP-1303.bam 61888106874 BAM submitted_aligned CPTAC3 5ec7e7bf-5309-4f12-a139-ed5874b807f3 f9de1265774941bf52342bfa284b100e {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.WGS.A.hg38 C3N-01090 CCRCC WGS tissue_normal CPT0212780006 ad7ce0f3-e2d5-475a-ad89-0a828f6c2985_wgs_gdc_realn.bam 91666748893 BAM harmonized CPTAC3 725ce428-0ce4-4995-afde-a75355741bf4 1d1514bb9daed9db0b88e255f8e694cf {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.WGS.N C3N-01090 CCRCC WGS blood_normal CPT0212840002 CPT0212840002.WholeGenome.RP-1303.bam 68301465809 BAM submitted_aligned CPTAC3 9dc8e8d8-496c-4b5f-806f-f5cccfc6e998 085863ce9f557c6cd73fbb31752b2ab7 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01090.WGS.N.hg38 C3N-01090 CCRCC WGS blood_normal CPT0212840002 b73d618c-e2c8-4f62-80aa-8019afa8f95e_wgs_gdc_realn.bam 99479984269 BAM harmonized CPTAC3 791745c6-4a8f-491f-ae96-32a0abf7c0f0 14fb5a71ef1c75af85578f90f1e4b360 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01090.WGS.T C3N-01090 CCRCC WGS tumor CPT0212770006 CPT0212770006.WholeGenome.RP-1303.bam 58766230149 BAM submitted_aligned CPTAC3 65f02135-ce95-40eb-ba7a-67657d3d29a2 4bc612b07130b9ce620d135bba2620b4 {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.WGS.T.hg38 C3N-01090 CCRCC WGS tumor CPT0212770006 5f3823c0-8ab0-4e86-8e0e-ad7484e0b34b_wgs_gdc_realn.bam 87153908162 BAM harmonized CPTAC3 e0441328-e759-4cf0-9c6c-31f519cd52bc 473f77617ef1a3da7bcd4d6facf00b4d {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.WXS.A C3N-01090 CCRCC WXS tissue_normal CPT0212780006 CPT0212780006.WholeExome.RP-1303.bam 22203294547 BAM submitted_aligned CPTAC3 80a4e2c7-f098-4594-b529-62c8f3c08f75 fe0c2b2919508658b70791e79b2fec7d {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.WXS.A.hg38 C3N-01090 CCRCC WXS tissue_normal CPT0212780006 ad7ce0f3-e2d5-475a-ad89-0a828f6c2985_wxs_gdc_realn.bam 30007100649 BAM harmonized CPTAC3 76a7a66f-8eeb-476f-985e-8fd812607a0a c9e2a76d19dcd526fde8a20298eaa69e {"aliquot_tag": "ALQ_a912b8b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01090.WXS.N C3N-01090 CCRCC WXS blood_normal CPT0212840002 CPT0212840002.WholeExome.RP-1303.bam 51325884399 BAM submitted_aligned CPTAC3 4f179706-94f9-41ff-8edc-d407617ed930 e0711c36d2ab1918204b0cfcb74be4f5 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01090.WXS.N.hg38 C3N-01090 CCRCC WXS blood_normal CPT0212840002 b73d618c-e2c8-4f62-80aa-8019afa8f95e_wxs_gdc_realn.bam 69554962591 BAM harmonized CPTAC3 ecf74575-3a99-463a-ab74-6cdd86dad1cb f75a1d677010f171e70ea0ddbf228785 {"aliquot_tag": "ALQ_9ad9237d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01090.WXS.T C3N-01090 CCRCC WXS tumor CPT0212770006 CPT0212770006.WholeExome.RP-1303.bam 30732832045 BAM submitted_aligned CPTAC3 76489890-1403-4aff-a3b3-aaf0060911fe 61a939ac978e14d63b17819e738077db {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01090.WXS.T.hg38 C3N-01090 CCRCC WXS tumor CPT0212770006 5f3823c0-8ab0-4e86-8e0e-ad7484e0b34b_wxs_gdc_realn.bam 41234080641 BAM harmonized CPTAC3 23810382-5589-4890-b27a-e35313f80dba 818156ae6f24e13f5dae006733863030 {"aliquot_tag": "ALQ_2b422f61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.MethArray.Green.A C3N-01091 CCRCC Methylation_Array tissue_normal CPT0212940006 204930640024_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8ba97afe-5872-4896-ba2d-853ecb9f6aa5 022128686b07828f1631dffcbf88c425 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.MethArray.Green.T C3N-01091 CCRCC Methylation_Array tumor CPT0212920006 203219650005_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 737eca9d-41d4-47d8-af43-e19f71f8f704 0cbaef0345ecd9ef297eb660a878b7b0 {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.MethArray.Red.A C3N-01091 CCRCC Methylation_Array tissue_normal CPT0212940006 204930640024_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 13226579-7d0a-4429-b062-1ae1e4196cbc dcc5c292d822f878d5bb685a07609e63 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.MethArray.Red.T C3N-01091 CCRCC Methylation_Array tumor CPT0212920006 203219650005_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 a93c5afb-8a0e-499c-897b-0bba6303b5cd 5c982cfa0610cf80d141b74f32ec85b1 {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.miRNA-Seq.A.hg38 C3N-01091 CCRCC miRNA-Seq tissue_normal CPT0212940009 1e45ba71-cecb-4c9d-9c84-7659e39e3bf3_mirnaseq_gdc_realn.bam 173359442 BAM harmonized CPTAC3 e3966895-dfc1-4569-877b-99dc41821db0 cd8f76fbe7ce5cbcbc0bf223d76997c6 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.miRNA-Seq.S21_L001_R1.T C3N-01091 CCRCC miRNA-Seq tumor CPT0212920009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACCGG_S21_L001_R1_001.unaln.bam 228438704 BAM S21_L001_R1 submitted_unaligned CPTAC3 f46fad03-6d28-497a-b30a-f81946ab86c0 be4a1b7fdd486b36f91868aab7531f75 {"aliquot_tag": "ALQ_4917dcf0", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.miRNA-Seq.S47_L008_R1.A C3N-01091 CCRCC miRNA-Seq tissue_normal CPT0212940009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L008_R1_001.unaln.bam 154660323 BAM S47_L008_R1 submitted_unaligned CPTAC3 949e7fca-898a-4fe0-9563-abc09af222c4 9459b9c256a05094731b9aa2b3768ecb {"aliquot_tag": "ALQ_c6572950", "sample": "S47", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.miRNA-Seq.T.hg38 C3N-01091 CCRCC miRNA-Seq tumor CPT0212920009 0d3e956a-c323-48e6-9370-a20576d85c60_mirnaseq_gdc_realn.bam 248698819 BAM harmonized CPTAC3 8ba64021-6636-435c-bf59-05224b9b5b59 54413e7f71442a22a030888dcb1e06af {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.RNA-Seq.chimeric.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.chimeric.gdc_realn.bam 39848740 BAM chimeric harmonized CPTAC3 a0ba317e-1de3-4100-84fb-cc171b08cca8 670fa8227c23566862cc8248c9744854 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.RNA-Seq.chimeric.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.chimeric.gdc_realn.bam 308443078 BAM chimeric harmonized CPTAC3 08d1b366-77bc-4877-a4f2-df33ced7d744 ff5d4c86e8dc7e4722beafdd1542b10e {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.RNA-Seq.genomic.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.genomic.gdc_realn.bam 9119424393 BAM genomic harmonized CPTAC3 ff216685-8f24-4858-aae8-b802759f49bf eeb656fcbe4bd3518eaa8085ce9b6a41 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.RNA-Seq.genomic.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.genomic.gdc_realn.bam 6748381626 BAM genomic harmonized CPTAC3 29fcc001-473b-4aaf-9716-6bd024321459 3776668f7fd15060eedb9f193bbfcb7f {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.RNA-Seq.S17_L006_R1.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R1_001.fastq.gz 3985013357 FASTQ S17_L006_R1 submitted_unaligned CPTAC3 e6046b4f-f6fb-4c3e-bc48-24b2ad64399d 6f07e3b0d477c4c429415fc4f4ca5cfd {"aliquot_tag": "ALQ_c6572950", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.RNA-Seq.S17_L006_R2.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R2_001.fastq.gz 4299492000 FASTQ S17_L006_R2 submitted_unaligned CPTAC3 334710ba-9516-42a2-8cc8-853f9e6105f8 5e79c3f305293069780ad2d373f38111 {"aliquot_tag": "ALQ_c6572950", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.RNA-Seq.S22_L006_R1.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 2953584806 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 abd032a1-3c71-4853-a8bc-ed677c4b9c33 3f9a635801a1930796b50cee3473f226 {"aliquot_tag": "ALQ_4917dcf0", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.RNA-Seq.S22_L006_R2.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3231197568 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 bb4a8318-d8c4-475e-b06e-6f374c990db7 035bca4193a71a39a250c28a77a93c69 {"aliquot_tag": "ALQ_4917dcf0", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.RNA-Seq.transcriptome.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.transcriptome.gdc_realn.bam 9441615014 BAM transcriptome harmonized CPTAC3 ab0faf2e-88b2-44b1-bf21-c248384ead2a dff2d305f917f581bf498a90452de719 {"aliquot_tag": "ALQ_c6572950", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.RNA-Seq.transcriptome.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.transcriptome.gdc_realn.bam 8099824318 BAM transcriptome harmonized CPTAC3 f07fd04b-add4-41ae-8b61-a3a2389f526c 7017d5f074dd969822ccd2f10b699a04 {"aliquot_tag": "ALQ_4917dcf0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.WGS.A C3N-01091 CCRCC WGS tissue_normal CPT0212940006 CPT0212940006.WholeGenome.RP-1303.bam 66239541263 BAM submitted_aligned CPTAC3 3f4fca60-27ce-4f44-ab20-d025a3fdbe9b a2be00a069270be6dd75b8be06b614d6 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.WGS.A.hg38 C3N-01091 CCRCC WGS tissue_normal CPT0212940006 0182fb2a-3733-4d64-ae56-aa514b46d1c1_wgs_gdc_realn.bam 96611211579 BAM harmonized CPTAC3 91803018-bfb7-494f-8bc4-a50aa8a502bb cc33844e66b285a9b2d6488101fbbdca {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.WGS.N C3N-01091 CCRCC WGS blood_normal CPT0213020002 CPT0213020002.WholeGenome.RP-1303.bam 56062597281 BAM submitted_aligned CPTAC3 567480cd-9d3d-4189-afd1-853fd619bd00 f9a6da9db931ae9caaf99e5899cf3e01 {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01091.WGS.N.hg38 C3N-01091 CCRCC WGS blood_normal CPT0213020002 6518fe48-b295-4778-b70b-c6f99d995c4b_wgs_gdc_realn.bam 82182216837 BAM harmonized CPTAC3 54a268c9-4b2f-4f95-bfe2-91c40eb47c99 914ad8070e900b93d01e5bbca6f51d2c {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01091.WGS.T C3N-01091 CCRCC WGS tumor CPT0212920006 CPT0212920006.WholeGenome.RP-1303.bam 67829751676 BAM submitted_aligned CPTAC3 377c7a1e-8cb1-4521-92dc-b10e6f72c2af 9d667002c0d403ac95618dcc7fb7f2ae {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.WGS.T.hg38 C3N-01091 CCRCC WGS tumor CPT0212920006 96449553-34c8-473b-a922-82a83ea0ee54_wgs_gdc_realn.bam 99493139765 BAM harmonized CPTAC3 07510df1-cd77-42c5-9660-46300b6d0439 85c0c98185bffcf0196d5a744aed9a9a {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.WXS.A C3N-01091 CCRCC WXS tissue_normal CPT0212940006 CPT0212940006.WholeExome.RP-1303.bam 29391077517 BAM submitted_aligned CPTAC3 6c3bc20f-82a4-4d97-b89a-7da79449a22b 01dd44483fc060cff4f4feae0c07a3c8 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.WXS.A.hg38 C3N-01091 CCRCC WXS tissue_normal CPT0212940006 0182fb2a-3733-4d64-ae56-aa514b46d1c1_wxs_gdc_realn.bam 40155676871 BAM harmonized CPTAC3 008687ca-695e-402b-9f73-a0b8da25769b 3c140e0ae9fdf4c0af790aec7d393414 {"aliquot_tag": "ALQ_56e834c1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01091.WXS.N C3N-01091 CCRCC WXS blood_normal CPT0213020002 CPT0213020002.WholeExome.RP-1303.bam 22330479496 BAM submitted_aligned CPTAC3 084fdd0e-c853-49b3-8984-00dcb431c9d4 4e4edcf2ed6dac06c4a919929684e6f7 {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01091.WXS.N.hg38 C3N-01091 CCRCC WXS blood_normal CPT0213020002 6518fe48-b295-4778-b70b-c6f99d995c4b_wxs_gdc_realn.bam 30613973545 BAM harmonized CPTAC3 220e8d09-4d3b-4820-8c0a-b4fe60c916d7 d8dd9277a466f3f4c42cfa25a5773ef2 {"aliquot_tag": "ALQ_5fbd5f04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01091.WXS.T C3N-01091 CCRCC WXS tumor CPT0212920006 CPT0212920006.WholeExome.RP-1303.bam 25487812596 BAM submitted_aligned CPTAC3 9da52ea1-7f3d-4af7-96ba-a4a98db5e878 06484678cff6e1fb3e4c8e4e31d7fcda {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01091.WXS.T.hg38 C3N-01091 CCRCC WXS tumor CPT0212920006 96449553-34c8-473b-a922-82a83ea0ee54_wxs_gdc_realn.bam 35284249131 BAM harmonized CPTAC3 ef8fa604-2ee9-46ce-a011-e6eb1a40d997 74346bfceebc77f95d94b994d189d2e3 {"aliquot_tag": "ALQ_d9a8c161", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.ADD_4fd44422.MethArray.Green.T C3N-01165 PDA Methylation_Array tumor CPT0093930010 202234360029_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 f2c1a165-e527-4581-9e9e-4fac1b9c76ac 7aa99c9c59edd31264324a552d8aad40 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.ADD_4fd44422.MethArray.Red.T C3N-01165 PDA Methylation_Array tumor CPT0093930010 202234360029_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 928411ca-b73b-4962-8cf1-a2ee2bacf803 710a0772cc5967f156fcb30c0cec3814 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.ADD_4fd44422.WGS.T C3N-01165 PDA WGS tumor CPT0093930010 CPT0093930010.WholeGenome.RP-1303.bam 122850949726 BAM submitted_aligned CPTAC3 19890ca7-b5c6-4a52-9734-d374aff284e5 523858c22d5b878c575abac5b1f58003 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.ADD_4fd44422.WGS.T.hg38 C3N-01165 PDA WGS tumor CPT0093930010 2272a222-c5c0-407b-858c-83cf60566517_wgs_gdc_realn.bam 182069914786 BAM harmonized CPTAC3 69f86aa0-f83f-4969-9e07-86e0de73f22f 40ebf8ca87d2ee40734b3467b96cb91a {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.ADD_4fd44422.WXS.T C3N-01165 PDA WXS tumor CPT0093930010 CPT0093930010.WholeExome.RP-1303.bam 31855767492 BAM submitted_aligned CPTAC3 feb6a01d-bf59-4708-8992-bf8477de3413 dba6fc33334c41f9326ffe7379f3ab2c {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.ADD_4fd44422.WXS.T.hg38 C3N-01165 PDA WXS tumor CPT0093930010 2272a222-c5c0-407b-858c-83cf60566517_wxs_gdc_realn.bam 44151910887 BAM harmonized CPTAC3 5ab73544-ffac-4cc9-9d93-66f7fda0ad56 0580c3b4e219fc4e3695b5fceb43cff7 {"aliquot_tag": "ADD_4fd44422", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.miRNA-Seq.S40_L007_R1.T C3N-01165 PDA miRNA-Seq tumor CPT0093930007 180828_UNC32-K00270_0112_AHWTLNBBXX_CATGGC_S40_L007_R1_001.unaln.bam 231459983 BAM S40_L007_R1 submitted_unaligned CPTAC3 a4bb9742-712a-4628-81e6-e173bf2471d3 8fb811fd4d4e6cd12b42e374385d2573 {"aliquot_tag": "ALQ_c8abe0c0", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.miRNA-Seq.T.hg38 C3N-01165 PDA miRNA-Seq tumor CPT0093930007 fde92faa-7c74-4f79-bac9-6be631daf1e1_mirnaseq_gdc_realn.bam 261501289 BAM harmonized CPTAC3 474a0f30-7263-4cb6-9680-de3314ef21f0 43f5fe6f0687cbebc9b2af55b4ae059d {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.RNA-Seq.chimeric.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.chimeric.gdc_realn.bam 34053818 BAM chimeric harmonized CPTAC3 4a137d1e-f949-4fe2-b395-2425094ba940 311c8a231b53223e5b71d3e0a766e56e {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.RNA-Seq.genomic.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.genomic.gdc_realn.bam 10079730004 BAM genomic harmonized CPTAC3 698b47fb-21aa-4307-99fd-c64cad53c6b8 270e68e9c497edf20d5b44eff8981964 {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.RNA-Seq.S6_L002_R1.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4376687728 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 ef9122ed-25a0-4e91-903f-ec3cf56105ee d85916536466327d6813841d35b1a2fe {"aliquot_tag": "ALQ_c8abe0c0", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.RNA-Seq.S6_L002_R2.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4712899554 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 4f12b59a-8a2a-4e1f-96b6-8a72c5a9737d 6ac55326ffd00baf6123813a413bbc54 {"aliquot_tag": "ALQ_c8abe0c0", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.RNA-Seq.transcriptome.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.transcriptome.gdc_realn.bam 11851837713 BAM transcriptome harmonized CPTAC3 10bccbb0-e949-406e-b89b-6051740573f6 cea5e70d3d3f943562a471a4db682bb1 {"aliquot_tag": "ALQ_c8abe0c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.WGS.N C3N-01165 PDA WGS blood_normal CPT0093970002 CPT0093970002.WholeGenome.RP-1303.bam 56928720368 BAM submitted_aligned CPTAC3 92d04e5a-5d89-4d3b-ba8f-220208a003ca 904b23428300ff91381ac4a12e56839d {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01165.WGS.N.hg38 C3N-01165 PDA WGS blood_normal CPT0093970002 1e3bbe99-f650-4ccf-ae6c-b3808b778c5e_wgs_gdc_realn.bam 84357331846 BAM harmonized CPTAC3 f38c4d33-0ba9-47bd-be74-6ea2ab3aba11 ca6a4f53b13ec4ab38f88ec9d203e96d {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01165.WXS.N C3N-01165 PDA WXS blood_normal CPT0093970002 CPT0093970002.WholeExome.RP-1303.bam 35264162772 BAM submitted_aligned CPTAC3 799eeb65-822a-48e0-8a2d-0d8dc7ce8241 b544a05913e8f72f54473568fe410fef {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01165.WXS.N.hg38 C3N-01165 PDA WXS blood_normal CPT0093970002 1e3bbe99-f650-4ccf-ae6c-b3808b778c5e_wxs_gdc_realn.bam 48542251994 BAM harmonized CPTAC3 c5233abe-7b5c-4316-8002-4f8ba08970ec 00e13a6feac18ec5b35e3e2efe6b4671 {"aliquot_tag": "ALQ_4d41b28f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01165.WXS.T C3N-01165 PDA WXS tumor CPT0093930010_1 CPT0093930010_1.WholeExome.RP-1303.bam 62910727021 BAM submitted_aligned CPTAC3 6e14723e-a366-40a6-96a9-a76b4a350682 3cd3d4fade6ad51083c01a71ec4f9597 {"aliquot_tag": "ALQ_fb27df23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01165.WXS.T.hg38 C3N-01165 PDA WXS tumor CPT0093930010_1 6909d633-6f16-4a7d-8c32-e336c7aac09c_wxs_gdc_realn.bam 86614024711 BAM harmonized CPTAC3 8cf32f57-6699-4906-8bdb-7f03c822a787 a2e7ee4dee4c523c4d0334dfacddfec8 {"aliquot_tag": "ALQ_fb27df23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.ADD_38047533.MethArray.Green.T C3N-01166 PDA Methylation_Array tumor CPT0093980010 202234380102_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b0a49f82-f8bf-45f8-859f-9fadc75f33f6 71c5a4e1007ce06d77be08aec719b8e5 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.ADD_38047533.MethArray.Red.T C3N-01166 PDA Methylation_Array tumor CPT0093980010 202234380102_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 059c3e26-1f5c-4560-bfff-b5d925f18b24 f01c295b8aed46e9d1f81662186ed209 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.ADD_38047533.WGS.T C3N-01166 PDA WGS tumor CPT0093980010 CPT0093980010.WholeGenome.RP-1303.bam 73487719487 BAM submitted_aligned CPTAC3 98001c38-0d9e-4ddb-88f8-404984440f7f e72da37a5c6a8c15b74643a7676efe0e {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.ADD_38047533.WGS.T.hg38 C3N-01166 PDA WGS tumor CPT0093980010 704b9b95-74af-455e-95f0-b130abeb8c47_wgs_gdc_realn.bam 109576339140 BAM harmonized CPTAC3 fbd5becd-2394-4f66-b183-437504add9ac 1333b76c10b6b461b3ddfc214ef9ab9c {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.ADD_38047533.WXS.T C3N-01166 PDA WXS tumor CPT0093980010 CPT0093980010.WholeExome.RP-1303.bam 34518854583 BAM submitted_aligned CPTAC3 4132766a-ff1a-47a4-9950-be625d8713ef 623ef29609476580f4277b384876f928 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.ADD_38047533.WXS.T.hg38 C3N-01166 PDA WXS tumor CPT0093980010 704b9b95-74af-455e-95f0-b130abeb8c47_wxs_gdc_realn.bam 47899887506 BAM harmonized CPTAC3 de84baa2-f473-49f5-a328-d26f95f19508 80b3fe153c59db000bd98a05040b3d64 {"aliquot_tag": "ADD_38047533", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.miRNA-Seq.S41_L007_R1.T C3N-01166 PDA miRNA-Seq tumor CPT0093980007 180828_UNC32-K00270_0112_AHWTLNBBXX_CATTTT_S41_L007_R1_001.unaln.bam 336784270 BAM S41_L007_R1 submitted_unaligned CPTAC3 06d02bbf-4870-4568-9259-f3532a60c915 e0dc3915d851051570e53f44b52b2fb7 {"aliquot_tag": "ALQ_bf7bd1d1", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.miRNA-Seq.T.hg38 C3N-01166 PDA miRNA-Seq tumor CPT0093980007 76121067-2dd1-422a-8d73-0d105a85f876_mirnaseq_gdc_realn.bam 377267757 BAM harmonized CPTAC3 6d353ee8-6aa0-4d13-a24b-7837c0038efb 6a554dc89af03e0ee963bc184a9852d4 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.RNA-Seq.chimeric.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.chimeric.gdc_realn.bam 37575171 BAM chimeric harmonized CPTAC3 7657ccec-ec94-420d-9c4d-ade0475cf0ea 0ee5c96defa4b02ceaff36818525d1f2 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.RNA-Seq.genomic.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.genomic.gdc_realn.bam 10666312254 BAM genomic harmonized CPTAC3 4daa3c63-296a-4c28-931f-d011722e62d5 b364fc26ef94ef7c6e6edd5ecf389fb0 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.RNA-Seq.S8_L002_R1.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 4542018014 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 70698283-5209-4695-a659-76d7963312e2 40d75781318f62017a8fdaeddafd3113 {"aliquot_tag": "ALQ_bf7bd1d1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.RNA-Seq.S8_L002_R2.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 5112929460 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 ccd8a1b9-df8e-4248-a09b-f60845d23eac a0987cd46d06e817b07a442a77922fac {"aliquot_tag": "ALQ_bf7bd1d1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.RNA-Seq.transcriptome.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.transcriptome.gdc_realn.bam 11959198044 BAM transcriptome harmonized CPTAC3 b8a6c991-cf4e-4905-8b82-0292c9b8cabb 965759e518ef21649c6d647042002ce5 {"aliquot_tag": "ALQ_bf7bd1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.WGS.N C3N-01166 PDA WGS blood_normal CPT0094020002 CPT0094020002.WholeGenome.RP-1303.bam 56277336639 BAM submitted_aligned CPTAC3 dfbf4470-dc54-48fd-a456-f4cc7ec5f380 d25146717677ed156183b4927136d42e {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01166.WGS.N.hg38 C3N-01166 PDA WGS blood_normal CPT0094020002 5f0475ea-0fad-44a4-a58b-24fe7c42a5db_wgs_gdc_realn.bam 82827610347 BAM harmonized CPTAC3 d39d185f-cf9e-45b1-9554-23ad6aafbefa 0129d9db39e64780f4282420825e2c29 {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01166.WXS.N C3N-01166 PDA WXS blood_normal CPT0094020002 CPT0094020002.WholeExome.RP-1303.bam 32894976633 BAM submitted_aligned CPTAC3 6ea50057-db7f-4933-a81a-4b0a1316d037 23555ff9fd75ce3fc3f626ecf80eb1ed {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01166.WXS.N.hg38 C3N-01166 PDA WXS blood_normal CPT0094020002 5f0475ea-0fad-44a4-a58b-24fe7c42a5db_wxs_gdc_realn.bam 45184969148 BAM harmonized CPTAC3 2b850ddd-a757-4ecd-9d62-ac9edefe81f6 0cbe5c2bb3788068c79a0c1723cb8148 {"aliquot_tag": "ALQ_670952b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01166.WXS.T C3N-01166 PDA WXS tumor CPT0093980010_1 CPT0093980010_1.WholeExome.RP-1303.bam 60509097929 BAM submitted_aligned CPTAC3 dd59f417-041e-4dea-ba89-d1b8d3f1e427 7178af8fc6ca5576117601ac28692289 {"aliquot_tag": "ALQ_f9208bd9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01166.WXS.T.hg38 C3N-01166 PDA WXS tumor CPT0093980010_1 061cfc9d-8a34-4f3a-a9e8-c5d5720a4e35_wxs_gdc_realn.bam 83359073550 BAM harmonized CPTAC3 f8221c13-80fb-413a-976e-4efaaf8c419b da4a42ca30cc9076d6a2d5e4ff06d306 {"aliquot_tag": "ALQ_f9208bd9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.ADD_f6ddabab.MethArray.Green.T C3N-01167 PDA Methylation_Array tumor CPT0087890010 202184900110_R04C01_Grn.idat 13676256 IDAT Green NA CPTAC3 b21e4860-95ff-4ca0-9ec6-6b6c922ff476 439a4d0c25659ebd1e67295e9493d51a {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.ADD_f6ddabab.MethArray.Red.T C3N-01167 PDA Methylation_Array tumor CPT0087890010 202184900110_R04C01_Red.idat 13676256 IDAT Red NA CPTAC3 04d9045e-ee0e-45ba-b936-893433c0beaa 3df10965e99ba4fe57ff0b4b8425827d {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.ADD_f6ddabab.WGS.T C3N-01167 PDA WGS tumor CPT0087890010 CPT0087890010.WholeGenome.RP-1303.bam 63132249675 BAM submitted_aligned CPTAC3 89a0c33f-5a3a-42fc-a1aa-b418c1b09ba3 1c561ef743ee2259ffac374279b77b9c {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.ADD_f6ddabab.WGS.T.hg38 C3N-01167 PDA WGS tumor CPT0087890010 159f535d-6784-4b18-9307-baca63090431_gdc_realn.bam 93612947908 BAM harmonized CPTAC3 81127181-3b1d-41ee-9d65-e51e2a94c936 edfe20bbbf735f3f76a3e854c8262a8f {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.ADD_f6ddabab.WXS.T C3N-01167 PDA WXS tumor CPT0087890010 CPT0087890010.WholeExome.RP-1303.bam 49551655732 BAM submitted_aligned CPTAC3 0b8ae712-2186-4eaf-8749-8cd09b52e852 78de9e762af9e5ab8519a87593a861af {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.ADD_f6ddabab.WXS.T.hg38 C3N-01167 PDA WXS tumor CPT0087890010 159f535d-6784-4b18-9307-baca63090431_gdc_realn.bam 67994161946 BAM harmonized CPTAC3 7f03b83b-b345-4dab-a24f-1ba214d4ff76 7f5d788e7bd61dc9fbc306b4f9b003e7 {"aliquot_tag": "ADD_f6ddabab", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.miRNA-Seq.S17_L008_R1.T C3N-01167 PDA miRNA-Seq tumor CPT0087890007 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L008_R1_001.unaln.bam 254119241 BAM S17_L008_R1 submitted_unaligned CPTAC3 f5f8d15c-628d-4195-a6f6-26f09564156f 142fd8d5d61246976ecffccd90ef15fb {"aliquot_tag": "ALQ_71a20f49", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.miRNA-Seq.T.hg38 C3N-01167 PDA miRNA-Seq tumor CPT0087890007 41130c6f-2b96-4a59-b925-231a2ff55578_mirnaseq_gdc_realn.bam 279684342 BAM harmonized CPTAC3 4cbb6a21-b1d0-4c5c-a31d-2c833a0d586d b2ff3937436431ba9312731d232444ad {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.RNA-Seq.chimeric.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.chimeric.gdc_realn.bam 37836818 BAM chimeric harmonized CPTAC3 611ad181-3885-43ef-8330-7b72a8d8696d de939ef02356293e3a0d5169d097fdff {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.RNA-Seq.genomic.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.genomic.gdc_realn.bam 8552523706 BAM genomic harmonized CPTAC3 2e35de5f-e2a5-4256-8c73-fda4e4eb0fd7 5d840585444f88db5cb0cdfec3981c0f {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.RNA-Seq.S4_L005_R1.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R1_001.fastq.gz 4560010112 FASTQ S4_L005_R1 submitted_unaligned CPTAC3 e94a5181-c7d1-401a-a4de-db98f6f1c368 a7de553c932fc4b29f8bee24f4fb4aef {"aliquot_tag": "ALQ_71a20f49", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.RNA-Seq.S4_L005_R2.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R2_001.fastq.gz 4817365384 FASTQ S4_L005_R2 submitted_unaligned CPTAC3 9f7a6bd7-14ee-42df-9f88-f608fea0a6a4 748abd6b143d4a87d25f9bdee8ad4a1d {"aliquot_tag": "ALQ_71a20f49", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.RNA-Seq.transcriptome.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.transcriptome.gdc_realn.bam 13300857011 BAM transcriptome harmonized CPTAC3 60ede535-53be-4463-839f-5b056cff19d4 e37ab489fb676655e1d62cee64cd76ed {"aliquot_tag": "ALQ_71a20f49", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.WGS.N C3N-01167 PDA WGS blood_normal CPT0087930002 CPT0087930002.WholeGenome.RP-1303.bam 69761664267 BAM submitted_aligned CPTAC3 48b529e9-a947-41b1-8a44-fb8dd09b3acd a02a2cd7d3136612ee9eebe1f41dc84b {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01167.WGS.N.hg38 C3N-01167 PDA WGS blood_normal CPT0087930002 c47a5d49-b24b-412d-824f-21f836a59334_gdc_realn.bam 105720714327 BAM harmonized CPTAC3 b502d545-01f9-4dda-9d83-a66f7813fd85 d5ba1ccb60c54543467f2482671d5319 {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01167.WXS.N C3N-01167 PDA WXS blood_normal CPT0087930002 CPT0087930002.WholeExome.RP-1303.bam 26889298256 BAM submitted_aligned CPTAC3 f7b62e25-0126-4e47-929a-7c8a074cfaa4 be043307858c4225f1c9fa600fe8fde6 {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01167.WXS.N.hg38 C3N-01167 PDA WXS blood_normal CPT0087930002 c47a5d49-b24b-412d-824f-21f836a59334_gdc_realn.bam 36278982609 BAM harmonized CPTAC3 ffd844ae-0ab6-4ca7-bdca-32dca76c68fd d4a5401c45a6b9aedd6dc3f4db9b5057 {"aliquot_tag": "ALQ_802430c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01167.WXS.T C3N-01167 PDA WXS tumor CPT0087890010_1 CPT0087890010_1.WholeExome.RP-1303.bam 73438659348 BAM submitted_aligned CPTAC3 cdfb7a9e-276d-480c-8897-24362c7fd8a7 2c78f94786aad720a4df3c44e460f8ed {"aliquot_tag": "ALQ_21d3bac1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01167.WXS.T.hg38 C3N-01167 PDA WXS tumor CPT0087890010_1 0924992b-9855-45ac-afad-78328b72b3bf_wxs_gdc_realn.bam 100546528763 BAM harmonized CPTAC3 36226d14-d333-4dda-b678-14d83fc075eb a88e94fb8db63bbe0700bfb32c327971 {"aliquot_tag": "ALQ_21d3bac1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.ADD_cdbba281.MethArray.Green.T C3N-01168 PDA Methylation_Array tumor CPT0094030009 202234370079_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 affc4be9-7fab-49e4-9127-bb093b757b3a 78afb7104e79323ceef8edace1008678 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.ADD_cdbba281.MethArray.Red.T C3N-01168 PDA Methylation_Array tumor CPT0094030009 202234370079_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 c3226a70-61f5-498c-b4dc-cc996fdf50ce 5a80d00e85373307b76870c0c7ad461c {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.ADD_cdbba281.WGS.T C3N-01168 PDA WGS tumor CPT0094030009 CPT0094030009.WholeGenome.RP-1303.bam 64991506561 BAM submitted_aligned CPTAC3 74920372-6abd-4999-842f-17df3f1e6b2c 51488b271a201f5e9c7cae0c94ebd9e1 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.ADD_cdbba281.WGS.T.hg38 C3N-01168 PDA WGS tumor CPT0094030009 ca8a6fce-c36c-45f5-95cb-fabf8a388422_wgs_gdc_realn.bam 96276758747 BAM harmonized CPTAC3 6bc87e89-0d51-452d-80d9-c186f04fb3a1 e05314b0c501ce15f2a7fff7d9807a04 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.ADD_cdbba281.WXS.T C3N-01168 PDA WXS tumor CPT0094030009 CPT0094030009.WholeExome.RP-1303.bam 39239567497 BAM submitted_aligned CPTAC3 a4c3da54-df24-4dac-abb7-fda9fe6eb476 ac3edda0deb80afabdaba11bbed04bf0 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.ADD_cdbba281.WXS.T.hg38 C3N-01168 PDA WXS tumor CPT0094030009 ca8a6fce-c36c-45f5-95cb-fabf8a388422_wxs_gdc_realn.bam 54439650740 BAM harmonized CPTAC3 562c6109-4681-450a-b982-cf0c46ffce63 7dfebb27e3832cbe06fc8255a6de8c56 {"aliquot_tag": "ADD_cdbba281", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.miRNA-Seq.S42_L007_R1.T C3N-01168 PDA miRNA-Seq tumor CPT0094030006 180828_UNC32-K00270_0112_AHWTLNBBXX_CCAACA_S42_L007_R1_001.unaln.bam 238879218 BAM S42_L007_R1 submitted_unaligned CPTAC3 2135e2ed-9156-44ab-9757-e1644237e949 2b0376a59d7d7091f1e377ffbe377ee8 {"aliquot_tag": "ALQ_5d04bf10", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.miRNA-Seq.T.hg38 C3N-01168 PDA miRNA-Seq tumor CPT0094030006 47cbc7a6-d354-483d-a044-5a02bdb74cf4_mirnaseq_gdc_realn.bam 266021926 BAM harmonized CPTAC3 c238c28c-1a51-4f10-9d66-3e7c7e28d9b0 960ffc574b3348391db4ba89365dafb0 {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.RNA-Seq.chimeric.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.chimeric.gdc_realn.bam 28366810 BAM chimeric harmonized CPTAC3 017d3e59-b4bd-41dd-b85d-69ea799aea91 29c486b3239697ff08a7ebff9b6c129c {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.RNA-Seq.genomic.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.genomic.gdc_realn.bam 8665657351 BAM genomic harmonized CPTAC3 2c3accf2-001f-49eb-8693-66d73293c95a 2fd8890f9975c26a9f4c4eeb1f24a1e4 {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.RNA-Seq.S7_L002_R1.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3919471422 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 37b2dbf1-2785-4b4d-b38d-8a84fd9c0a66 f8c93717a1e904ccb3e115ffe0afef2a {"aliquot_tag": "ALQ_5d04bf10", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.RNA-Seq.S7_L002_R2.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4224130212 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 a382af42-66b1-4e2d-a90d-f8548c169d98 2f1d606d07d802333bf3a78ed78836fe {"aliquot_tag": "ALQ_5d04bf10", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.RNA-Seq.transcriptome.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.transcriptome.gdc_realn.bam 10802979507 BAM transcriptome harmonized CPTAC3 065bd566-61df-4410-9844-d32748a0b8b2 9af788ca266980a3cb408887c31f6e35 {"aliquot_tag": "ALQ_5d04bf10", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.WGS.N C3N-01168 PDA WGS blood_normal CPT0094070002 CPT0094070002.WholeGenome.RP-1303.bam 69357858638 BAM submitted_aligned CPTAC3 6f117e25-801c-4d02-8a66-065d3e575ed2 7ffd583136695611d05a6b92d233411e {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01168.WGS.N.hg38 C3N-01168 PDA WGS blood_normal CPT0094070002 d3480ad0-6349-44d9-8329-e0a60e2bf8a8_wgs_gdc_realn.bam 101831517163 BAM harmonized CPTAC3 d10bde0c-495c-4b54-8b2d-a0bef5483ee9 19dce619e920b3233dbc2516559ceae4 {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01168.WXS.N C3N-01168 PDA WXS blood_normal CPT0094070002 CPT0094070002.WholeExome.RP-1303.bam 29077544359 BAM submitted_aligned CPTAC3 8c47b045-b4de-490c-a183-c900c967140a 3e0e509afe8bcb632c982b89c63a6893 {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01168.WXS.N.hg38 C3N-01168 PDA WXS blood_normal CPT0094070002 d3480ad0-6349-44d9-8329-e0a60e2bf8a8_wxs_gdc_realn.bam 39952170860 BAM harmonized CPTAC3 a3bca5bf-5171-486b-ab6a-e8ab097b746f 74076f298445c84f0219f21b1443b905 {"aliquot_tag": "ALQ_afe9ddc9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01168.WXS.T C3N-01168 PDA WXS tumor CPT0094030009_1 CPT0094030009_1.WholeExome.RP-1303.bam 73911542690 BAM submitted_aligned CPTAC3 b75873e4-d7b2-4e0a-8544-abef8934788e bce3c8f72f85adb28bc6cf51540972cf {"aliquot_tag": "ALQ_3764f52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01168.WXS.T.hg38 C3N-01168 PDA WXS tumor CPT0094030009_1 714bd893-759d-4fc2-916e-50538e843845_wxs_gdc_realn.bam 101689106154 BAM harmonized CPTAC3 99d3d536-08bf-4e9e-875d-62e43e0ab7e0 91c436af7de397baafb3138bc4c7a30c {"aliquot_tag": "ALQ_3764f52b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01169.ADD_daac1a75.MethArray.Green.T C3N-01169 PDA Methylation_Array tumor CPT0094080010 202234380024_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1fa21d3b-2bf0-49e7-99cd-da3e15798d66 4b460bdba0a6b11bba369e58afbdcf01 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.ADD_daac1a75.MethArray.Red.T C3N-01169 PDA Methylation_Array tumor CPT0094080010 202234380024_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 cb7c33a9-4017-4e5c-9318-4ec3c91d7a27 9f3a7851cc3458294111f7c04053d0c1 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.ADD_daac1a75.WGS.T C3N-01169 PDA WGS tumor CPT0094080010 CPT0094080010.WholeGenome.RP-1303.bam 128041173351 BAM submitted_aligned CPTAC3 9688ca54-5be3-4e0c-90d2-9cfaf8be7487 2566c15390e2d213044f87fc371d3bf7 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.ADD_daac1a75.WGS.T.hg38 C3N-01169 PDA WGS tumor CPT0094080010 a011807b-3bde-4f2c-a905-84863cb877a3_wgs_gdc_realn.bam 185446057812 BAM harmonized CPTAC3 0aea19fa-217b-4929-9413-d6bbc96f53df 8015ce1d9125271b844073ae7d57e962 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.ADD_daac1a75.WXS.T C3N-01169 PDA WXS tumor CPT0094080010 CPT0094080010.WholeExome.RP-1303.bam 39361221345 BAM submitted_aligned CPTAC3 c2b594a4-88d9-4537-b3b1-c6eb02b295de 25ceb4bfcc50f7a7c53abb31419af7c5 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.ADD_daac1a75.WXS.T.hg38 C3N-01169 PDA WXS tumor CPT0094080010 a011807b-3bde-4f2c-a905-84863cb877a3_wxs_gdc_realn.bam 54937541768 BAM harmonized CPTAC3 e97151dd-2971-46dd-9425-a01b0a94d11f 3bd969cc930026f67ccf0a4053b4e1c6 {"aliquot_tag": "ADD_daac1a75", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.miRNA-Seq.S43_L007_R1.T C3N-01169 PDA miRNA-Seq tumor CPT0094080007 180828_UNC32-K00270_0112_AHWTLNBBXX_CGGAAT_S43_L007_R1_001.unaln.bam 332715692 BAM S43_L007_R1 submitted_unaligned CPTAC3 05341272-cc50-4983-9049-6f4f3adab8b3 7585837be3f7397033bc07ed4c9a2ded {"aliquot_tag": "ALQ_5dd3be97", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.miRNA-Seq.T.hg38 C3N-01169 PDA miRNA-Seq tumor CPT0094080007 69fa27fe-9baa-4599-9490-8c89ec48dcf3_mirnaseq_gdc_realn.bam 371346861 BAM harmonized CPTAC3 7c3967af-b323-4b32-b260-7d807965857b 75b7685cb199957a2c1ccee67b4131fe {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.RNA-Seq.chimeric.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.chimeric.gdc_realn.bam 33604460 BAM chimeric harmonized CPTAC3 9784e6da-4da4-45ab-b99a-71f3e2158857 a40f5552ed648935122faf647558dda2 {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.RNA-Seq.genomic.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.genomic.gdc_realn.bam 9847831779 BAM genomic harmonized CPTAC3 ad12f603-a119-4962-9461-2bef8380c450 03138b9c449342ce6800753e50843898 {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.RNA-Seq.S3_L001_R1.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 4336908193 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 3df22693-51a4-42aa-b67b-7d2ffccdc2af 07d3b5c75bbe9c1bbf6648c812efe760 {"aliquot_tag": "ALQ_5dd3be97", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.RNA-Seq.S3_L001_R2.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 4605952804 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 768cd08d-2cd7-4826-8f30-43c739f3894d 4d2ad9d6a9d086ae058f62535616c2a2 {"aliquot_tag": "ALQ_5dd3be97", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.RNA-Seq.transcriptome.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.transcriptome.gdc_realn.bam 10970232135 BAM transcriptome harmonized CPTAC3 d343273f-7f28-450b-827d-3a91e011737a 3307b05220d5f2257e5ad51016c283ff {"aliquot_tag": "ALQ_5dd3be97", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01169.WGS.N C3N-01169 PDA WGS blood_normal CPT0094120002 CPT0094120002.WholeGenome.RP-1303.bam 64766660666 BAM submitted_aligned CPTAC3 35cdbd74-c098-4c94-b1bd-4d3fb014ef3a 42a7f644578cf43b84d6f4c16e309143 {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01169.WGS.N.hg38 C3N-01169 PDA WGS blood_normal CPT0094120002 6c765351-e5e5-4a8a-8ab6-9f73805f2105_wgs_gdc_realn.bam 94529824896 BAM harmonized CPTAC3 63b1585a-f981-4312-8d8d-4c9f7756afad 726eb433d8668c5f6e023fdc74592e9d {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01169.WXS.N C3N-01169 PDA WXS blood_normal CPT0094120002 CPT0094120002.WholeExome.RP-1303.bam 31812142414 BAM submitted_aligned CPTAC3 1f4efc95-58c3-4022-8abb-3928e239e26e f9a4efbd77c15abe89d5159d48ccbffa {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01169.WXS.N.hg38 C3N-01169 PDA WXS blood_normal CPT0094120002 6c765351-e5e5-4a8a-8ab6-9f73805f2105_wxs_gdc_realn.bam 43129814641 BAM harmonized CPTAC3 39db50ed-a362-4bed-9669-1d5afd4aaf45 5a67b118d03a2628bc52aa2b6c3d8419 {"aliquot_tag": "ALQ_ac55811c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01169.WXS.T C3N-01169 PDA WXS tumor CPT0094080010_1 CPT0094080010_1.WholeExome.RP-1303.bam 64278535243 BAM submitted_aligned CPTAC3 414d2442-e4e5-4ccf-a665-00b624801fa1 4e994d5cd77b3d89fecd6f1764aa1405 {"aliquot_tag": "ALQ_820efd3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01169.WXS.T.hg38 C3N-01169 PDA WXS tumor CPT0094080010_1 5f2df483-39d3-4424-9391-e48b972eed39_wxs_gdc_realn.bam 89047991920 BAM harmonized CPTAC3 3a56ebab-1d20-4417-a1e6-a3c777079e7a 8ffe21d411ec0db682d8f057ff0688b0 {"aliquot_tag": "ALQ_820efd3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.MethArray.Green.T C3N-01171 UCEC Methylation_Array tumor CPT0095190009 202234380017_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0b94642b-47ea-4803-95b0-96218321b289 5ed3b656dea823cd34774e1aee6f08c4 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.MethArray.Red.T C3N-01171 UCEC Methylation_Array tumor CPT0095190009 202234380017_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 bd99f0f7-fd36-41ff-b4e2-bf27cff64241 a0ee66cf3702fcde7fbeb85adeec4023 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.miRNA-Seq.S44_L007_R1.T C3N-01171 UCEC miRNA-Seq tumor CPT0095190006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTAGCT_S44_L007_R1_001.unaln.bam 245716367 BAM S44_L007_R1 submitted_unaligned CPTAC3 8a3fd642-db93-40bf-a631-4396681f7316 882e0de7321721737af59b9d2984886c {"aliquot_tag": "ALQ_7a9f7fa0", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.miRNA-Seq.T.hg38 C3N-01171 UCEC miRNA-Seq tumor CPT0095190006 dc19bb6a-479b-4caf-939e-40059bcfacdc_mirnaseq_gdc_realn.bam 279102887 BAM harmonized CPTAC3 74c08b1f-0a62-4a49-a7ba-697ecfb0e84b e14c5f18e07015c2e6f36559ec3cf936 {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.chimeric.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.chimeric.gdc_realn.bam 36417577 BAM chimeric harmonized CPTAC3 77e58d43-9d37-41f2-8bb3-a0add571e1f2 fecf16f5eb2bd6868274a809fbe19d2a {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.chimeric.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.chimeric.gdc_realn.bam 474798938 BAM chimeric harmonized CPTAC3 3b2bce24-b57d-497d-b2f3-363a2373ee6c 36928c5cd2db39bdf9cecc7828460b54 {"aliquot_tag": "ALQ_ff7a2c9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.genomic.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.genomic.gdc_realn.bam 9222356661 BAM genomic harmonized CPTAC3 ec0abd96-1527-4060-b13a-ad0cc086c749 737bb23374c0084e96220043281cf521 {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.genomic.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.genomic.gdc_realn.bam 23678612651 BAM genomic harmonized CPTAC3 ff750a67-4c11-4005-9adc-3baca6a2a0e3 ded33a392829cf29d9293467085d3f00 {"aliquot_tag": "ALQ_ff7a2c9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.S2_L001_R1.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R1_001.fastq.gz 4334441749 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 46e98647-28dd-4501-970b-7f8cc6d5cdc0 f692538f06952d6545c7e28358954b0a {"aliquot_tag": "ALQ_7a9f7fa0", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.S2_L001_R2.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R2_001.fastq.gz 4609243257 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 28a61edc-3fbd-4df6-954d-aa3ef9693d0d bbbf1f2571c737d5f3af3cf72550e2ea {"aliquot_tag": "ALQ_7a9f7fa0", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.S81_R1.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R1_001.fastq.gz 15438164232 FASTQ S81_R1 submitted_unaligned CPTAC3 0ea16774-4576-4e76-82cc-9ea47d90173d bdd2d4c1f9639e39e1ecdbc97c1b86ab {"aliquot_tag": "ALQ_ff7a2c9e", "sample": "S81", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.S81_R2.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R2_001.fastq.gz 16172707576 FASTQ S81_R2 submitted_unaligned CPTAC3 e294c843-9f7f-4411-8c5b-a5ee671142f1 55d71ef7ee7866dff0562adb8955a816 {"aliquot_tag": "ALQ_ff7a2c9e", "sample": "S81", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.transcriptome.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.transcriptome.gdc_realn.bam 9209285299 BAM transcriptome harmonized CPTAC3 b34b53f0-589f-495f-91f6-d6b74e2e12d5 6664df182cbc4d12cb141b2424fe147b {"aliquot_tag": "ALQ_7a9f7fa0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.RNA-Seq.transcriptome.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.transcriptome.gdc_realn.bam 13929541193 BAM transcriptome harmonized CPTAC3 b6c40268-b440-4942-b201-b166cd41541d 2d2df164d1fc46e999b42d4da4cc700a {"aliquot_tag": "ALQ_ff7a2c9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.WGS.N C3N-01171 UCEC WGS blood_normal CPT0095220002 CPT0095220002.WholeGenome.RP-1303.bam 59761332004 BAM submitted_aligned CPTAC3 dc132e6c-b623-4d4f-afc2-63e600379391 23d36c3ec1fe5e809c7c4c2b6e0fed67 {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01171.WGS.N.hg38 C3N-01171 UCEC WGS blood_normal CPT0095220002 1fa4348c-ccab-4616-8cc2-4a122b2f1d60_wgs_gdc_realn.bam 87176824444 BAM harmonized CPTAC3 e1c57884-38c5-4044-8614-bee9ac875ffd 801f873abbf0a85b45645bd8de216e50 {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01171.WGS.T C3N-01171 UCEC WGS tumor CPT0095190009 CPT0095190009.WholeGenome.RP-1303.bam 67039416584 BAM submitted_aligned CPTAC3 dab31bc6-b53f-4789-8551-f55541c4cf3a 4b790889edbc1950caf9812618fab6b6 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.WGS.T.hg38 C3N-01171 UCEC WGS tumor CPT0095190009 b4c9a22c-71ce-455b-9b04-0f90f3f02572_wgs_gdc_realn.bam 96932320271 BAM harmonized CPTAC3 0e5e724b-b785-496d-9a76-ccd1f353915c b979ae22f4e2c62af0534e5db895a55f {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.WXS.N C3N-01171 UCEC WXS blood_normal CPT0095220002 CPT0095220002.WholeExome.RP-1303.bam 37294440731 BAM submitted_aligned CPTAC3 91f978c3-3a79-4cf4-a1fb-dcbd3a0fa816 f6ab1e8b6cb68888a45a620e41d8b017 {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01171.WXS.N.hg38 C3N-01171 UCEC WXS blood_normal CPT0095220002 1fa4348c-ccab-4616-8cc2-4a122b2f1d60_wxs_gdc_realn.bam 51872707006 BAM harmonized CPTAC3 2eb30ba6-2c7b-42d9-97ca-cf5e5c647b3d 6f315ad11178fff8c7160d3134e4158e {"aliquot_tag": "ALQ_8cb6f806", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01171.WXS.T C3N-01171 UCEC WXS tumor CPT0095190009 CPT0095190009.WholeExome.RP-1303.bam 35858043711 BAM submitted_aligned CPTAC3 2b1bbe18-55ed-41a6-992c-15d4bfd8dd55 0ffda3bda7c4344f24b91b9f46afb47c {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01171.WXS.T.hg38 C3N-01171 UCEC WXS tumor CPT0095190009 b4c9a22c-71ce-455b-9b04-0f90f3f02572_wxs_gdc_realn.bam 49250192374 BAM harmonized CPTAC3 6bd1656a-45f4-420f-9ff5-bd2170d5385f e09b42f763ede6b601903d33602a1b63 {"aliquot_tag": "ALQ_ea206231", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.MethArray.Green.T C3N-01172 UCEC Methylation_Array tumor CPT0095230009 202234380017_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 806a436a-a807-4539-a295-83de64dab0b7 750b44f78f9aaf03be21081316e2eb30 {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.MethArray.Red.T C3N-01172 UCEC Methylation_Array tumor CPT0095230009 202234380017_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3e50e43f-0a5f-4b94-9989-02d20596c0dd d7708a0796709a4c01ecea5ab992ffaa {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.miRNA-Seq.S45_L007_R1.T C3N-01172 UCEC miRNA-Seq tumor CPT0095230006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTATAC_S45_L007_R1_001.unaln.bam 212183674 BAM S45_L007_R1 submitted_unaligned CPTAC3 52b33b31-8083-4ce2-b787-53606d107c2f cde7d4791549b45d125d3abe0c4c2fbe {"aliquot_tag": "ALQ_b6bb15af", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.miRNA-Seq.T.hg38 C3N-01172 UCEC miRNA-Seq tumor CPT0095230006 ce963034-b30d-4fa2-86fe-0e64aa62ae05_mirnaseq_gdc_realn.bam 247786971 BAM harmonized CPTAC3 2f50cbcf-3fe9-40b9-a5a4-064fda4c27ba bff1164738d724dc662296a403ade66d {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.RNA-Seq.chimeric.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.chimeric.gdc_realn.bam 27245822 BAM chimeric harmonized CPTAC3 f660e99f-11ef-478e-808d-c1c5540068a8 6898d19b1e3de5cab90c515dddefdbf3 {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.RNA-Seq.genomic.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.genomic.gdc_realn.bam 6890412680 BAM genomic harmonized CPTAC3 8d48262f-6f3e-4fb9-92d5-01d80360fff4 1c24f5cd0ae68bb37502c76e3da185e6 {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.RNA-Seq.S1_L001_R1.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R1_001.fastq.gz 3421852260 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 7a5331d9-0936-4443-bf80-acef02f0cde6 bd203b7f3955752f57776c724c673947 {"aliquot_tag": "ALQ_b6bb15af", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.RNA-Seq.S1_L001_R2.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R2_001.fastq.gz 3649082566 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 628d2b64-f95c-4bd9-8646-95ed83a138d2 66fb5cc20e6ae45657353bc5c82cf640 {"aliquot_tag": "ALQ_b6bb15af", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.RNA-Seq.transcriptome.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.transcriptome.gdc_realn.bam 9423856217 BAM transcriptome harmonized CPTAC3 67222c07-e003-46e6-b572-3b1a76892457 693273084491654a9912d134b6e37d91 {"aliquot_tag": "ALQ_b6bb15af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.WGS.N C3N-01172 UCEC WGS blood_normal CPT0095270002 CPT0095270002.WholeGenome.RP-1303.bam 58504533471 BAM submitted_aligned CPTAC3 4f87086c-d213-4806-a7e5-c5d91528e1f2 51ef7717348fbc32374c3be3c2c51e8b {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01172.WGS.N.hg38 C3N-01172 UCEC WGS blood_normal CPT0095270002 09a88bc6-09d4-4097-b86e-94b2958939e0_wgs_gdc_realn.bam 85850878667 BAM harmonized CPTAC3 b26ae84c-2a46-4bd5-9b0a-9519d8fb5b78 d5256de0a666ea7d11e5c8bc85ff20f2 {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01172.WGS.T C3N-01172 UCEC WGS tumor CPT0095230009 CPT0095230009.WholeGenome.RP-1303.bam 57901515111 BAM submitted_aligned CPTAC3 ce70e9fc-ce84-4ed1-b46a-cde1a8768188 8c00b2b7a3180ab4a7e96a38f7e4230e {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.WGS.T.hg38 C3N-01172 UCEC WGS tumor CPT0095230009 f42c4a32-2a09-4d4d-8c69-ca0eabf84785_wgs_gdc_realn.bam 86050596761 BAM harmonized CPTAC3 6f997690-bb63-41f7-8fae-1cbd573afddc b6df8d6776aa42a86ecdf735f0974b25 {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.WXS.N C3N-01172 UCEC WXS blood_normal CPT0095270002 CPT0095270002.WholeExome.RP-1303.bam 41772783343 BAM submitted_aligned CPTAC3 7c1067eb-c0e3-43ef-9032-d4691e008370 caba7c79c2a918cd0924a9f1414edb82 {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01172.WXS.N.hg38 C3N-01172 UCEC WXS blood_normal CPT0095270002 09a88bc6-09d4-4097-b86e-94b2958939e0_wxs_gdc_realn.bam 57878520242 BAM harmonized CPTAC3 af010c87-0341-4e37-ba86-c523e5d3a362 47864944c2e4200276c5f4586dcd1166 {"aliquot_tag": "ALQ_44567776", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01172.WXS.T C3N-01172 UCEC WXS tumor CPT0095230009 CPT0095230009.WholeExome.RP-1303.bam 23718413039 BAM submitted_aligned CPTAC3 089eb676-0cdf-4460-925d-82671855b5a5 39ea42247b19caf9a4fabddafa36325e {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01172.WXS.T.hg38 C3N-01172 UCEC WXS tumor CPT0095230009 f42c4a32-2a09-4d4d-8c69-ca0eabf84785_wxs_gdc_realn.bam 32794011909 BAM harmonized CPTAC3 a43f5828-4153-43ce-9f17-d1f70e4f93e0 3465a7785fb03e599a4e2b2c2dc3050c {"aliquot_tag": "ALQ_2604083e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01175.MethArray.Green.A C3N-01175 CCRCC Methylation_Array tissue_normal CPT0078670009 204930630081_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e49ddf97-4fd2-44a0-bef6-3d70046c067a 7a9cb77a6dc8993c8233ea111e65cbf5 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.MethArray.Green.T C3N-01175 CCRCC Methylation_Array tumor CPT0078660009 202176290047_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d5525d34-f972-4bc2-aca4-136a9d3471c9 f4d76861abd7bf3488b45b3d951a8084 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.MethArray.Red.A C3N-01175 CCRCC Methylation_Array tissue_normal CPT0078670009 204930630081_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 21a5e35d-a80c-4243-8a3b-adb555e4e90f c3b364a730efbe1e51ea39cac2094933 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.MethArray.Red.T C3N-01175 CCRCC Methylation_Array tumor CPT0078660009 202176290047_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 d87be60d-9b22-4d2a-b296-e3ff3721f244 db605286559ec4c0d38e8b6ff009a3af {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.miRNA-Seq.A.hg38 C3N-01175 CCRCC miRNA-Seq tissue_normal CPT0078670006 7592f7bd-bdf0-4479-a114-85eccb6b33ef_mirnaseq_gdc_realn.bam 210172758 BAM harmonized CPTAC3 8fb37c86-54a9-45de-8149-4c70cfe2f0d7 8c3b3f814e8b4f777736aa96dc65bce7 {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.miRNA-Seq.S15_L008_R1.T C3N-01175 CCRCC miRNA-Seq tumor CPT0078660006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L008_R1_001.unaln.bam 181371223 BAM S15_L008_R1 submitted_unaligned CPTAC3 1cf4dbc7-b615-4c4f-a967-31eb45b37d11 4f3d9f758d79c2bffd81d18f8ebc87b5 {"aliquot_tag": "ALQ_9197ab3b", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.miRNA-Seq.S22_L003_R1.A C3N-01175 CCRCC miRNA-Seq tissue_normal CPT0078670006 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L003_R1_001.unaln.bam 188848552 BAM S22_L003_R1 submitted_unaligned CPTAC3 6867a9b5-f43e-4fea-8fec-f364fa599058 d3466dac0bd6dc77c73b0cfee023238d {"aliquot_tag": "ALQ_acf7828b", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.miRNA-Seq.T.hg38 C3N-01175 CCRCC miRNA-Seq tumor CPT0078660006 eb3ed157-ac9f-49d0-a12c-3cf1193e855b_mirnaseq_gdc_realn.bam 204043866 BAM harmonized CPTAC3 3515ff66-6af0-4f51-b7b7-a2c6c7f36c76 0ab5d4085abcb501fb6b2c9f6950c551 {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.RNA-Seq.chimeric.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.chimeric.gdc_realn.bam 65966657 BAM chimeric harmonized CPTAC3 5904c32e-2d3d-44d7-a2b0-ed4387010f9a c370e7e7d7dec41a602389df99847407 {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.RNA-Seq.chimeric.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.chimeric.gdc_realn.bam 119177933 BAM chimeric harmonized CPTAC3 6543c7c4-ba1c-42cf-8c4b-bf2901644aed f92fd4d093c27963b973df0e86d13a59 {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.RNA-Seq.genomic.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.genomic.gdc_realn.bam 8368693323 BAM genomic harmonized CPTAC3 3bcd337e-96f3-4f41-a57c-e5a6aecfebd4 becf626f394af0c3f42f8c3119d2c79d {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.RNA-Seq.genomic.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.genomic.gdc_realn.bam 7738605307 BAM genomic harmonized CPTAC3 353ec31f-96f9-46d2-9610-05f42222ba20 3c8e6732eb81145c391182b2c1819297 {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.RNA-Seq.S19_L006_R1.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R1_001.fastq.gz 3809003730 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 25595679-20dc-49bd-add0-3c0327def3ae ba378d3dc0222e5aafbf2dc6a8809b45 {"aliquot_tag": "ALQ_9197ab3b", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.RNA-Seq.S19_L006_R2.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R2_001.fastq.gz 3996118521 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 8524e1fc-ec06-4a66-9a6d-7c407fc2de99 330ce0c0f139a7403239214a6913ae90 {"aliquot_tag": "ALQ_9197ab3b", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.RNA-Seq.S7_L002_R1.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R1_001.fastq.gz 4089472462 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 e1b2ac07-f41e-4528-96a5-b5e2ff02db63 377a82d484dc905054e5f53e61057aa3 {"aliquot_tag": "ALQ_acf7828b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.RNA-Seq.S7_L002_R2.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R2_001.fastq.gz 4476617257 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 a66289db-08b0-475a-b7ec-0c456d884a3e 68cee88f90a7d90ac3f8533091e5a40f {"aliquot_tag": "ALQ_acf7828b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.RNA-Seq.transcriptome.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.transcriptome.gdc_realn.bam 10389303362 BAM transcriptome harmonized CPTAC3 34a3b353-c2d1-4f32-9645-8461867363dd 9d3f268c0cb74e645a5565a94913da88 {"aliquot_tag": "ALQ_acf7828b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.RNA-Seq.transcriptome.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.transcriptome.gdc_realn.bam 10580792604 BAM transcriptome harmonized CPTAC3 b1a7a8f2-3ec9-40aa-a806-eb67690739c1 5bf8df6be5edb95ef47c40706468cedb {"aliquot_tag": "ALQ_9197ab3b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.scRNA-Seq.S3_L003_R1.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S3_L003_R1_001.fastq.gz 3571524420 FASTQ S3_L003_R1 submitted_unaligned CPTAC3 9b3857f9-b778-4de2-aa79-d79229fd1626 fd611575e4b87835e84058e4e4e07b6f {"aliquot_tag": "ALQ_7f99ca17", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01175.scRNA-Seq.S3_L003_R2.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S3_L003_R2_001.fastq.gz 12224467616 FASTQ S3_L003_R2 submitted_unaligned CPTAC3 819134a0-dd7b-4c19-926b-60f2ac7c451e 211d28d16857f942c6c3f45cda164cf0 {"aliquot_tag": "ALQ_7f99ca17", "sample": "S3", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01175.scRNA-Seq.S7_L004_R1.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S7_L004_R1_001.fastq.gz 891052523 FASTQ S7_L004_R1 submitted_unaligned CPTAC3 0b69529a-2dbf-4fd2-8f5e-9d02c333d6e9 35fddce9045fcf988cd41c42123e1595 {"aliquot_tag": "ALQ_7f99ca17", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01175.scRNA-Seq.S7_L004_R2.T C3N-01175 CCRCC scRNA-Seq tumor CPT0078660004 20220127_WUSTL_TWFU-CPT0078660004-Y1N1Z1_1Bn1_1_ATGACGTCGC+AGGTCAGGAT_S7_L004_R2_001.fastq.gz 3037710136 FASTQ S7_L004_R2 submitted_unaligned CPTAC3 4e30e442-2f3e-4d5c-9ee4-7c1e0d8bf215 f52f87f3427a42462200827dd0f52365 {"aliquot_tag": "ALQ_7f99ca17", "sample": "S7", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01175.WGS.A C3N-01175 CCRCC WGS tissue_normal CPT0078670009 CPT0078670009.WholeGenome.RP-1303.bam 71890074328 BAM submitted_aligned CPTAC3 5c4f4c88-529b-490f-87b3-4ca3808010c3 23d5027d204087f53196d6368382f715 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.WGS.A.hg38 C3N-01175 CCRCC WGS tissue_normal CPT0078670009 24e37fc2-22e8-4c09-bbcd-e39c00715a95_wgs_gdc_realn.bam 104486549337 BAM harmonized CPTAC3 13c9c503-aded-4fc8-ada5-ab0ce27bb69e 085920e1372012858c2e7501e5376a87 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.WGS.N C3N-01175 CCRCC WGS blood_normal CPT0078700002 CPT0078700002.WholeGenome.RP-1303.bam 74511003816 BAM submitted_aligned CPTAC3 26b4a4d1-cd8a-45a2-9a1b-f676c1631336 50fd08bddc31e55f2913371555de279f {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01175.WGS.N.hg38 C3N-01175 CCRCC WGS blood_normal CPT0078700002 ccfd9642-b949-42e3-8003-971d13a591a4_gdc_realn.bam 111491009195 BAM harmonized CPTAC3 8b1f5901-fbb2-49d1-90cc-1b1d4b6afca7 84bfa5670ab030f3d6d45d6b1394884f {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01175.WGS.T C3N-01175 CCRCC WGS tumor CPT0078660009 CPT0078660009.WholeGenome.RP-1303.bam 72923343806 BAM submitted_aligned CPTAC3 737111db-6410-46f8-a0a2-a6008a7a2df1 ad31d917fcf31f5c719e8430a1041d07 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.WGS.T.hg38 C3N-01175 CCRCC WGS tumor CPT0078660009 86d5144f-9ba3-4075-96ba-82a552d4da2d_gdc_realn.bam 109225622331 BAM harmonized CPTAC3 3557da38-3d5a-4963-864f-d678d7850953 98e714172f7b5327b9895ba7cefada06 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.WXS.A C3N-01175 CCRCC WXS tissue_normal CPT0078670009 CPT0078670009.WholeExome.RP-1303.bam 26545174897 BAM submitted_aligned CPTAC3 15cfcc9f-18a6-4c3b-bc6c-7e71bba44f58 92d0a94b4972f652b5be92c91d08bce7 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.WXS.A.hg38 C3N-01175 CCRCC WXS tissue_normal CPT0078670009 24e37fc2-22e8-4c09-bbcd-e39c00715a95_wxs_gdc_realn.bam 35779173936 BAM harmonized CPTAC3 e2e341d4-9fc6-4b74-8508-a213c7d8b9c5 e77ed671a234cbf8d229057a1cdb7943 {"aliquot_tag": "ALQ_3c489f1a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01175.WXS.N C3N-01175 CCRCC WXS blood_normal CPT0078700002 CPT0078700002.WholeExome.RP-1303.bam 26387441376 BAM submitted_aligned CPTAC3 0e279d75-1c9d-4951-8f2d-e723c98470e6 1f995ca5ff72ba505f1498a68422d794 {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01175.WXS.N.hg38 C3N-01175 CCRCC WXS blood_normal CPT0078700002 ccfd9642-b949-42e3-8003-971d13a591a4_gdc_realn.bam 35217640666 BAM harmonized CPTAC3 29b508e5-d42f-4a5f-b2be-fc1f96f53117 6d70d33bad5df5703127153c51b22b5d {"aliquot_tag": "ALQ_d2e64927", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01175.WXS.T C3N-01175 CCRCC WXS tumor CPT0078660009 CPT0078660009.WholeExome.RP-1303.bam 31968063190 BAM submitted_aligned CPTAC3 e05485f5-8adb-4c6f-9e77-14ffca6ef5d3 c10164730ea375a11f8a1f0445a07e43 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01175.WXS.T.hg38 C3N-01175 CCRCC WXS tumor CPT0078660009 86d5144f-9ba3-4075-96ba-82a552d4da2d_gdc_realn.bam 43778984607 BAM harmonized CPTAC3 0d6da033-cde1-47f4-a033-707e93196955 53a9bb015191b9ef62af649b12e2d492 {"aliquot_tag": "ALQ_128b6aa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.MethArray.Green.A C3N-01176 CCRCC Methylation_Array tissue_normal CPT0078940009 204930640061_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 391cd8ec-13f2-4b54-b57d-ca4ba473b9f9 c7f839538278f3b0ec5174abc4ca4f42 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.MethArray.Green.T C3N-01176 CCRCC Methylation_Array tumor CPT0078930009 202176290147_R03C01_Grn.idat 13676215 IDAT Green NA CPTAC3 adf0d4c0-2870-4576-999e-e17ff9f99793 0ab6e3170079ee1f5308bcac5a88878e {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.MethArray.Red.A C3N-01176 CCRCC Methylation_Array tissue_normal CPT0078940009 204930640061_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 a48c1d19-5f09-4073-83cc-bc0eef11fd69 7830ca9d804d1d43ef5587a88bc05ca8 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.MethArray.Red.T C3N-01176 CCRCC Methylation_Array tumor CPT0078930009 202176290147_R03C01_Red.idat 13676215 IDAT Red NA CPTAC3 1bb04c46-e7fc-44fe-aed5-9c310f644ffd a821d29b05fba228443f69fd18b7eae7 {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.miRNA-Seq.A.hg38 C3N-01176 CCRCC miRNA-Seq tissue_normal CPT0078940006 6986f4cc-298e-4d53-8c38-159ed0ed7d45_mirnaseq_gdc_realn.bam 227778295 BAM harmonized CPTAC3 da4d0344-2e87-42b0-9971-56538b9b5dd4 fe1324ab04b18065692bdef1efb18ec4 {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.miRNA-Seq.S20_L008_R1.T C3N-01176 CCRCC miRNA-Seq tumor CPT0078930006 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L008_R1_001.unaln.bam 232389291 BAM S20_L008_R1 submitted_unaligned CPTAC3 23f5e03b-ad7d-4037-8a8d-3c0db544b8a1 4f18acf4233ae26bd1a67307abf432cf {"aliquot_tag": "ALQ_a821969e", "sample": "S20", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.miRNA-Seq.S24_L003_R1.A C3N-01176 CCRCC miRNA-Seq tissue_normal CPT0078940006 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L003_R1_001.unaln.bam 204558071 BAM S24_L003_R1 submitted_unaligned CPTAC3 abcb9e65-6bdb-46e4-9880-d557fadbb3fb c3bec8cf56510dccd287d2aef2ba9ac7 {"aliquot_tag": "ALQ_1a014a8e", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.miRNA-Seq.T.hg38 C3N-01176 CCRCC miRNA-Seq tumor CPT0078930006 af2bfb03-b4a0-47f3-930a-a780c3dee2f1_mirnaseq_gdc_realn.bam 255549158 BAM harmonized CPTAC3 83ffd0df-f7ef-408b-806f-e93a9fad3f07 37993d13d5029a197653372458c0429f {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.RNA-Seq.chimeric.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.chimeric.gdc_realn.bam 60935475 BAM chimeric harmonized CPTAC3 4072df40-ecbd-4801-b4a6-3b0a999ed703 a58133c8e6e54d354a9048a37b193e78 {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.RNA-Seq.chimeric.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.chimeric.gdc_realn.bam 139817666 BAM chimeric harmonized CPTAC3 11339342-e532-459a-b6fe-2d77067c233d ca97289c8db250fd7622c1240830030b {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.RNA-Seq.genomic.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.genomic.gdc_realn.bam 8387793666 BAM genomic harmonized CPTAC3 b4d9b7f6-8377-4b32-b2b6-73542c004ddd 68ce8aa19839b381d88f42e6b8688e73 {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.RNA-Seq.genomic.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.genomic.gdc_realn.bam 7510984237 BAM genomic harmonized CPTAC3 23152348-8249-4bde-b3f6-71f0081dd975 b1c74e5a81ce29ea95b1bf2a48b44341 {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.RNA-Seq.S3_L001_R1.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R1_001.fastq.gz 4154638260 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 02980652-6d5a-42ff-82f5-509e4517f1d2 fabf064dbad72807f53337bdc696b53b {"aliquot_tag": "ALQ_1a014a8e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.RNA-Seq.S3_L001_R2.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R2_001.fastq.gz 4466704957 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 51f1907b-0235-495d-bc06-028c37671ac0 9b92b93c4b975fd831e7af3517078f76 {"aliquot_tag": "ALQ_1a014a8e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.RNA-Seq.S9_L003_R1.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R1_001.fastq.gz 3603313334 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 104dca41-ddbb-4219-9649-3fda018a597d 6847ae392fcc546909204111700f10ca {"aliquot_tag": "ALQ_a821969e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.RNA-Seq.S9_L003_R2.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R2_001.fastq.gz 3916951902 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 5292c1d5-4f8f-42da-92b2-96a4d5699b0e 940264b67d7213271dc542276e35586b {"aliquot_tag": "ALQ_a821969e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.RNA-Seq.transcriptome.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.transcriptome.gdc_realn.bam 10410054640 BAM transcriptome harmonized CPTAC3 4f55ec74-5266-494a-aa83-08cf9f2411a9 0bc76b68363d6a4e29985adceac144cd {"aliquot_tag": "ALQ_1a014a8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.RNA-Seq.transcriptome.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.transcriptome.gdc_realn.bam 11179306943 BAM transcriptome harmonized CPTAC3 56d95c06-db16-4c57-a13b-424c97a1a594 841fc3c65da15ccbc3cefe250c12f9d0 {"aliquot_tag": "ALQ_a821969e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.WGS.A C3N-01176 CCRCC WGS tissue_normal CPT0078940009 CPT0078940009.WholeGenome.RP-1303.bam 59940367579 BAM submitted_aligned CPTAC3 87bc3fd5-d8b2-4dc7-b135-baa0e677b100 875a892798d63ebab04f51af8eedbc40 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.WGS.A.hg38 C3N-01176 CCRCC WGS tissue_normal CPT0078940009 743d5a09-5ac6-4a46-bcf1-2cc1bfaf36a4_wgs_gdc_realn.bam 88733765754 BAM harmonized CPTAC3 00fb0f17-7f91-4b1b-a7c7-96242b9f8715 f733233e3e7c82c43fd90df72262dd00 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.WGS.N C3N-01176 CCRCC WGS blood_normal CPT0078970002 CPT0078970002.WholeGenome.RP-1303.bam 66649786743 BAM submitted_aligned CPTAC3 b3bfe4ec-4dae-4ebd-a7a1-5ee452f8c066 64f2d2400f355abb39505b6346ab5eac {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01176.WGS.N.hg38 C3N-01176 CCRCC WGS blood_normal CPT0078970002 fd8d5071-5ea4-4550-ac60-5f35979ccfa1_gdc_realn.bam 101042533880 BAM harmonized CPTAC3 a1b4effd-88af-4de7-8de1-6e607c780a34 9296e63d0ce0bee25181a6da92f17c8f {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01176.WGS.T C3N-01176 CCRCC WGS tumor CPT0078930009 CPT0078930009.WholeGenome.RP-1303.bam 83482267289 BAM submitted_aligned CPTAC3 52280ddd-81fa-46fc-8637-2e54114d5961 50682b273130fb5b43eb4afb48771513 {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.WGS.T.hg38 C3N-01176 CCRCC WGS tumor CPT0078930009 102b99bd-cd31-438d-8460-581c9b59a03e_gdc_realn.bam 126699970212 BAM harmonized CPTAC3 ff90b069-7571-41ac-b434-83e8fceede1a 0000f14e44e7127a59fbd6d8b86d0e4b {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.WXS.A C3N-01176 CCRCC WXS tissue_normal CPT0078940009 CPT0078940009.WholeExome.RP-1303.bam 28485461910 BAM submitted_aligned CPTAC3 ddbdd9e8-3224-45bf-ba9b-18ee5a34a0da 0bad4e6ecbf5f9b9b0e8a2ba2375a252 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.WXS.A.hg38 C3N-01176 CCRCC WXS tissue_normal CPT0078940009 743d5a09-5ac6-4a46-bcf1-2cc1bfaf36a4_wxs_gdc_realn.bam 38732160162 BAM harmonized CPTAC3 2cbefed3-9119-4265-9c9c-9973adcd2b38 ccc28a487323f65bdb92c29f601c7215 {"aliquot_tag": "ALQ_8abe571f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01176.WXS.N C3N-01176 CCRCC WXS blood_normal CPT0078970002 CPT0078970002.WholeExome.RP-1303.bam 32067914829 BAM submitted_aligned CPTAC3 b9c709b9-19c5-4232-bb9d-8b1a1c91579a c8448b7ef00ad6ccd361f8dc7540ba5a {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01176.WXS.N.hg38 C3N-01176 CCRCC WXS blood_normal CPT0078970002 fd8d5071-5ea4-4550-ac60-5f35979ccfa1_gdc_realn.bam 43420067204 BAM harmonized CPTAC3 a9166e91-0547-4238-8f4d-9a5da3b0fa0f 019f8b55b14fe0572b1a6cea5efbedae {"aliquot_tag": "ALQ_5accf447", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01176.WXS.T C3N-01176 CCRCC WXS tumor CPT0078930009 CPT0078930009.WholeExome.RP-1303.bam 30771037107 BAM submitted_aligned CPTAC3 df40d1a2-9a0f-4aa1-a70f-709b7d2bf0e1 a5c75e827c71d354785734254a7da952 {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01176.WXS.T.hg38 C3N-01176 CCRCC WXS tumor CPT0078930009 102b99bd-cd31-438d-8460-581c9b59a03e_gdc_realn.bam 42516741516 BAM harmonized CPTAC3 53cf889f-d76e-4231-b6d1-d14c522dba6a 3489af52c6870817d9ceaa0c8748f53e {"aliquot_tag": "ALQ_389e8b0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01177.MethArray.Green.T C3N-01177 CCRCC Methylation_Array tumor CPT0379850009 205589740003_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8da1de72-3393-48cd-81c5-1eacdd875dbe c02a9389fd26b7873d6692e1507907ff {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.MethArray.Red.T C3N-01177 CCRCC Methylation_Array tumor CPT0379850009 205589740003_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 276c29df-f6e4-4989-bf7c-8c7d0c9a8767 e574843d72870240ceccee4d9ffc3bda {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.miRNA-Seq.S48_L003_R1.T C3N-01177 CCRCC miRNA-Seq tumor CPT0379850006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TTAGGC_S48_L003_R1_001.unaln.bam 251928311 BAM S48_L003_R1 submitted_unaligned CPTAC3 bccc9803-19f9-448b-8dfb-cd9ea52005fb 12d7420d633067b61dcddf567a39c5f6 {"aliquot_tag": "ALQ_73c787ea", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.miRNA-Seq.T.hg38 C3N-01177 CCRCC miRNA-Seq tumor CPT0379850006 23f42110-a539-4bc8-8d99-b5ea46cb3860_mirnaseq_gdc_realn.bam 268818486 BAM harmonized CPTAC3 4e2cf486-a179-41aa-b371-61e1e57cb0ef baac244e615e29f3c27f799deab8001d {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.RNA-Seq.chimeric.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.chimeric.gdc_realn.bam 75564924 BAM chimeric harmonized CPTAC3 780804d9-111f-4608-9d74-8b8acaf47896 7e868cefb0f615103229738517da8b31 {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.RNA-Seq.genomic.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.genomic.gdc_realn.bam 5857513613 BAM genomic harmonized CPTAC3 968b9e02-8417-40ee-981d-7c449112c4ea c12e13e43d0dec813982ea535cf141a1 {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.RNA-Seq.S31_L008_R1.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 2547271701 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 0ddc43d9-99dd-4576-9881-940ebc92064f b1b8afaada9acc56031640de77ce6e77 {"aliquot_tag": "ALQ_73c787ea", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.RNA-Seq.S31_L008_R2.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 2999470180 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 4160103f-b91c-46e3-a8fc-427a3c98e757 c3c015f029aed35fbd8aeb9bf6c19f2c {"aliquot_tag": "ALQ_73c787ea", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.RNA-Seq.transcriptome.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.transcriptome.gdc_realn.bam 7351464077 BAM transcriptome harmonized CPTAC3 59ebecac-85d2-4f87-8418-8c30c0cb47f8 94f758f8e33f2382ee601dc85109534d {"aliquot_tag": "ALQ_73c787ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.WGS.N C3N-01177 CCRCC WGS blood_normal CPT0379960002 CPT0379960002.WholeGenome.RP-2158.bam 22754962129 BAM submitted_aligned CPTAC3 96d24a1b-1305-49db-8945-5198289b5a54 37f3a654d75eddc4013e89fee1054784 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01177.WGS.N.hg38 C3N-01177 CCRCC WGS blood_normal CPT0379960002 44936cfc-62ca-45f5-9cb8-d585102b97d9_wgs_gdc_realn.bam 67906285932 BAM harmonized CPTAC3 89cf8de8-a316-49c7-b553-d3110c2ed2a8 3a798afee54c1ed0b94a1222c5fbf685 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01177.WGS.T C3N-01177 CCRCC WGS tumor CPT0379850009 CPT0379850009.WholeGenome.RP-2158.bam 20109164895 BAM submitted_aligned CPTAC3 b7fee13d-3ee2-4e19-ab9c-3e1049641400 b9864f30c2263bb326fdd2a2bd498d89 {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.WGS.T.hg38 C3N-01177 CCRCC WGS tumor CPT0379850009 ea1fd606-337d-43ec-bfff-5c12813fdb44_wgs_gdc_realn.bam 60346497248 BAM harmonized CPTAC3 0e1459a8-bd99-440a-9d8d-14917e243cca 939f4aa6b748e759565cf5a7b0af69f7 {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.WXS.N C3N-01177 CCRCC WXS blood_normal CPT0379960002 CPT0379960002.WholeExome.RP-1303.bam 29890388195 BAM submitted_aligned CPTAC3 588f1c74-0b2f-4a3e-a567-7cd0944966c4 1ae86db6ac43d03bf6b03f616743ac57 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01177.WXS.N.hg38 C3N-01177 CCRCC WXS blood_normal CPT0379960002 44936cfc-62ca-45f5-9cb8-d585102b97d9_wxs_gdc_realn.bam 40928413234 BAM harmonized CPTAC3 f1129b0f-043a-4af0-90fe-5feafcd150cd 2e54f673fae0cce4ccd5984b5ff12594 {"aliquot_tag": "ALQ_f856ea86", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01177.WXS.T C3N-01177 CCRCC WXS tumor CPT0379850009 CPT0379850009.WholeExome.RP-1303.bam 26731760799 BAM submitted_aligned CPTAC3 1a988bd1-4fa3-49ca-9991-7ca2798b944a 623e75492b487c253926c2d4df79386e {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01177.WXS.T.hg38 C3N-01177 CCRCC WXS tumor CPT0379850009 ea1fd606-337d-43ec-bfff-5c12813fdb44_wxs_gdc_realn.bam 36646966427 BAM harmonized CPTAC3 bd1192c3-c60f-413c-b260-dcc1bf31f45e 4e8157e627b22d0df0a07629c4198c4a {"aliquot_tag": "ALQ_e3789a7b", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01178.MethArray.Green.A C3N-01178 CCRCC Methylation_Array tissue_normal CPT0079000009 204930630084_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f29d0820-fcbf-4b7c-a1a1-73511fb938ad f72b1b7884dcae0990a32db4bcae6afe {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.MethArray.Green.T C3N-01178 CCRCC Methylation_Array tumor CPT0078990009 202184990069_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc1ac39d-fc6b-4bdc-a5c1-ea5366be22a7 6c296d20113be5a76243aa8db2a43b74 {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.MethArray.Red.A C3N-01178 CCRCC Methylation_Array tissue_normal CPT0079000009 204930630084_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 e3cd86c4-680d-49ca-8ec4-1e3a41811f71 fd46f5b6a11b49a441fbd61dabdc7fbc {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.MethArray.Red.T C3N-01178 CCRCC Methylation_Array tumor CPT0078990009 202184990069_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 dad4607b-f53f-456b-9419-9bc9f5dbebec 4e336a4650189b473ccb82192a797dff {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.miRNA-Seq.A.hg38 C3N-01178 CCRCC miRNA-Seq tissue_normal CPT0079000006 21185157-b396-46ad-a069-5962cd59fef3_mirnaseq_gdc_realn.bam 232546626 BAM harmonized CPTAC3 9e5b1eff-0d97-4410-8b6a-fd12dce3063c 1e4f20b4d064c42be6f30405b2dcf078 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.miRNA-Seq.S21_L008_R1.T C3N-01178 CCRCC miRNA-Seq tumor CPT0078990006 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L008_R1_001.unaln.bam 218998917 BAM S21_L008_R1 submitted_unaligned CPTAC3 c0ebc26b-e1de-46d9-b590-e46c84442de2 212292582ddc103712f52d240f440f6f {"aliquot_tag": "ALQ_e2918e3f", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.miRNA-Seq.S25_L002_R1.A C3N-01178 CCRCC miRNA-Seq tissue_normal CPT0079000006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTGAT_S25_L002_R1_001.unaln.bam 207585858 BAM S25_L002_R1 submitted_unaligned CPTAC3 f25b1154-3e41-49fc-b2d0-0450502b2111 d76844a64ed4422947ed34c26e4aa008 {"aliquot_tag": "ALQ_6ef9b632", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.miRNA-Seq.T.hg38 C3N-01178 CCRCC miRNA-Seq tumor CPT0078990006 9ea506a7-defa-444e-9acf-61e2ba060deb_mirnaseq_gdc_realn.bam 240575977 BAM harmonized CPTAC3 2032b393-62c1-4edb-b26c-f7d2fa881f1a 91e3f25db36fd75bb22ed37969a0c565 {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.RNA-Seq.chimeric.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.chimeric.gdc_realn.bam 34870212 BAM chimeric harmonized CPTAC3 f733d565-9c65-437d-bbac-c757432a571c bb80da870adeeb8ff3c57f68f6628b62 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.RNA-Seq.chimeric.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.chimeric.gdc_realn.bam 135880560 BAM chimeric harmonized CPTAC3 09c157a8-bc13-4235-b041-bf108b251bce 25ada8b8575516f68cb34c66edd2b592 {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.RNA-Seq.genomic.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.genomic.gdc_realn.bam 7893138898 BAM genomic harmonized CPTAC3 6daab5fc-082c-4426-b89b-decd58a0e265 ad05085c29126c4b272511e4d097d644 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.RNA-Seq.genomic.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.genomic.gdc_realn.bam 7510618070 BAM genomic harmonized CPTAC3 2dc1ed5e-1cb3-4774-a6a4-387c89853582 06c8e77842cf28c37ff7534b68c6607f {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.RNA-Seq.S11_L003_R1.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3553629147 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 19f6c4c3-c727-4e0c-b117-36485f2e8ad3 b5432c951f3a71b76891148c9212a328 {"aliquot_tag": "ALQ_e2918e3f", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.RNA-Seq.S11_L003_R2.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R2_001.fastq.gz 3895588213 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 19d1dba9-e1aa-4b52-ae10-f5971ea2474a 7d9d4e80e2fb5ffd552e9537355e756b {"aliquot_tag": "ALQ_e2918e3f", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.RNA-Seq.S2_L001_R1.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R1_001.fastq.gz 4120851057 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 01cd24dc-7356-4f0d-baca-aa8aea70f070 fae4a5eef4d019c1648e8b9e9d98a73d {"aliquot_tag": "ALQ_6ef9b632", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.RNA-Seq.S2_L001_R2.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R2_001.fastq.gz 3789044481 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 aa50587f-fd93-45c5-9dbf-0c84e6fa1105 e8cc41ee47f256fafe3df55bce75eb5c {"aliquot_tag": "ALQ_6ef9b632", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.RNA-Seq.transcriptome.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.transcriptome.gdc_realn.bam 8818970873 BAM transcriptome harmonized CPTAC3 2d2d2607-06da-47e5-a70c-ddcf4f9ba1ba 8a049949c181761970f4c22e0838ee95 {"aliquot_tag": "ALQ_6ef9b632", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.RNA-Seq.transcriptome.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.transcriptome.gdc_realn.bam 10930322424 BAM transcriptome harmonized CPTAC3 bed998c8-4ddc-4b40-a93e-1907d153482f 93239a3f5ea952b2f67439bd26bb7c16 {"aliquot_tag": "ALQ_e2918e3f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.WGS.A C3N-01178 CCRCC WGS tissue_normal CPT0079000009 CPT0079000009.WholeGenome.RP-1303.bam 60180975440 BAM submitted_aligned CPTAC3 134c6ce4-4875-4355-8279-0fe54a7d83d1 8d4ef9fbda85ec971d94c173e898b54a {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.WGS.A.hg38 C3N-01178 CCRCC WGS tissue_normal CPT0079000009 3d1cd639-4972-46e5-8c25-a02657b158bf_wgs_gdc_realn.bam 87863898901 BAM harmonized CPTAC3 bb34758d-23b1-4d4e-9a7b-79cf3c4e3fcc 244408cf88bb3025e9f41ce9601ef785 {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.WGS.N C3N-01178 CCRCC WGS blood_normal CPT0079040002 CPT0079040002.WholeGenome.RP-1303.bam 65713423961 BAM submitted_aligned CPTAC3 563c4f69-a5dd-4524-8307-248016753b90 7754a9fc2fe4c1f7837bc1c02a8307b9 {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01178.WGS.N.hg38 C3N-01178 CCRCC WGS blood_normal CPT0079040002 803a5732-d362-4613-8b64-0e63e6b4a6b6_gdc_realn.bam 97661540851 BAM harmonized CPTAC3 2d71b33c-4581-447a-ad49-bbc6bf5a7910 e81e13d76fc3da18e0aaf3ecfea5a7fa {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01178.WGS.T C3N-01178 CCRCC WGS tumor CPT0078990009 CPT0078990009.WholeGenome.RP-1303.bam 71293867476 BAM submitted_aligned CPTAC3 c13545f3-90e6-4304-875c-9124fa84973f 26ef103e1375e22b7b1345b860a2ec98 {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.WGS.T.hg38 C3N-01178 CCRCC WGS tumor CPT0078990009 498203e3-99ec-4ebd-8c3e-f2402caa4788_gdc_realn.bam 106635932287 BAM harmonized CPTAC3 6d0a5018-11f1-4a56-b839-873a254e75a8 ddc431cab85252b32d4d0337c6b2fcca {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.WXS.A C3N-01178 CCRCC WXS tissue_normal CPT0079000009 CPT0079000009.WholeExome.RP-1303.bam 37714195417 BAM submitted_aligned CPTAC3 5102ba7e-f6d1-4cd4-841f-36e59c0cd7fc 1b21e280788ed859c2de16ddd41be87a {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.WXS.A.hg38 C3N-01178 CCRCC WXS tissue_normal CPT0079000009 3d1cd639-4972-46e5-8c25-a02657b158bf_wxs_gdc_realn.bam 50241716289 BAM harmonized CPTAC3 941556af-baff-419f-9855-9770e31b7bf6 c3e644569fb988584bc156a28c3cd31d {"aliquot_tag": "ALQ_fe46aba3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01178.WXS.N C3N-01178 CCRCC WXS blood_normal CPT0079040002 CPT0079040002.WholeExome.RP-1303.bam 27711822688 BAM submitted_aligned CPTAC3 bc4ffd72-4f56-4f82-ac12-07a3e5d0654e 048accca0fa9588b2dac81a07ef77f69 {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01178.WXS.N.hg38 C3N-01178 CCRCC WXS blood_normal CPT0079040002 803a5732-d362-4613-8b64-0e63e6b4a6b6_gdc_realn.bam 37235148789 BAM harmonized CPTAC3 709f9cc6-2f7b-457a-b982-1f495fd06f61 7c44653a879d4f8c2288e4a9cb3fc0d2 {"aliquot_tag": "ALQ_9c14d4eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01178.WXS.T C3N-01178 CCRCC WXS tumor CPT0078990009 CPT0078990009.WholeExome.RP-1303.bam 33825100042 BAM submitted_aligned CPTAC3 a5459918-8a0f-443c-ab7f-84ca5ed59d17 7d831377a510ee546acdfecb544ba4ce {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01178.WXS.T.hg38 C3N-01178 CCRCC WXS tumor CPT0078990009 498203e3-99ec-4ebd-8c3e-f2402caa4788_gdc_realn.bam 47109885213 BAM harmonized CPTAC3 462ef77b-35c1-42df-be69-283f75cd43b3 3fc6330853b2cce328541cef1b8d63cb {"aliquot_tag": "ALQ_722e93ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.MethArray.Green.A C3N-01179 CCRCC Methylation_Array tissue_normal CPT0088920009 204930640108_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 83c5d436-63ff-467f-9f97-860992984c2b 3d710e4c9a3cd8321ad59018c0555310 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.MethArray.Green.T C3N-01179 CCRCC Methylation_Array tumor CPT0088900009 202178770143_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 bda52d99-c83d-4956-b535-bd78edf1c1b5 09beeafccb528f935d5a344f5337d093 {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.MethArray.Red.A C3N-01179 CCRCC Methylation_Array tissue_normal CPT0088920009 204930640108_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 1f28b8d9-97da-4c0e-9629-044c829a922f 038564a0acd4c94584260ba89455b903 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.MethArray.Red.T C3N-01179 CCRCC Methylation_Array tumor CPT0088900009 202178770143_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 b2df9d2f-b128-438a-884c-233961c03d47 1634bcbd99fd3567181af92b32e8b24a {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.miRNA-Seq.A.hg38 C3N-01179 CCRCC miRNA-Seq tissue_normal CPT0088920006 b38b9d1c-e02f-47b5-b722-d31ce7980de8_mirnaseq_gdc_realn.bam 193275925 BAM harmonized CPTAC3 f25ea0be-fe4d-4d91-a062-383c4a7b3b09 83c3acde1c64fe50fd3d7eafd7708b2f {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.miRNA-Seq.S17_L006_R1.T C3N-01179 CCRCC miRNA-Seq tumor CPT0088900006 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L006_R1_001.unaln.bam 292017341 BAM S17_L006_R1 submitted_unaligned CPTAC3 273224b2-4fbd-4505-a36b-16f4f1946cb5 4e8d437740ef2e225dbddba3a082dad9 {"aliquot_tag": "ALQ_36a1fee2", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.miRNA-Seq.S33_L002_R1.A C3N-01179 CCRCC miRNA-Seq tissue_normal CPT0088920006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGGCG_S33_L002_R1_001.unaln.bam 171033840 BAM S33_L002_R1 submitted_unaligned CPTAC3 2c114079-d07c-45fc-b9d0-e07d63f133c9 143fee4fced5e962d8f852b5bd07fd48 {"aliquot_tag": "ALQ_4c61ad82", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.miRNA-Seq.T.hg38 C3N-01179 CCRCC miRNA-Seq tumor CPT0088900006 a4c78f92-1c2d-47d1-9492-3d522c178441_mirnaseq_gdc_realn.bam 328502183 BAM harmonized CPTAC3 4e2f2a32-5ea7-4cde-b1e1-6f853bdcab78 d05700706c5b16003ff1e81fbaa2095e {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.RNA-Seq.chimeric.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.chimeric.gdc_realn.bam 27022296 BAM chimeric harmonized CPTAC3 ce37da19-cffc-4cb3-bdb6-c05ffcb63bb9 e9656d50f948b11216dcccc509da667c {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.RNA-Seq.chimeric.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.chimeric.gdc_realn.bam 51505894 BAM chimeric harmonized CPTAC3 cd321c81-6cae-4c40-8911-fe4873dc6f84 c2b8f46b6e1b54d2156c1a35b162766a {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.RNA-Seq.genomic.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.genomic.gdc_realn.bam 5166094162 BAM genomic harmonized CPTAC3 2057cf8a-36f6-48f1-940a-c01900487834 2a4f2e982a63c6b860b8f8f850f04d01 {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.RNA-Seq.genomic.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.genomic.gdc_realn.bam 8917317934 BAM genomic harmonized CPTAC3 beb88f5c-50d2-4aae-b42c-4f500bb8602b 03f6a06069d969e074a2c96d48045194 {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.RNA-Seq.S14_L004_R1.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R1_001.fastq.gz 4322063086 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 f823c35f-49f6-4b4e-924f-1301c97cf2e0 d7a48096e9a33177db684adcd40b8750 {"aliquot_tag": "ALQ_36a1fee2", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.RNA-Seq.S14_L004_R2.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R2_001.fastq.gz 4664159822 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 4ac98ccb-09db-4275-b6d1-040d73f9f344 e9c63fbbf8a46e76969dc6e428014a04 {"aliquot_tag": "ALQ_36a1fee2", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.RNA-Seq.S2_L007_R1.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R1_001.fastq.gz 2465773322 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 308882f2-bdc0-49ee-85b1-8522f3e4c35e c5f2418369b2f143836ac0c70204c46a {"aliquot_tag": "ALQ_4c61ad82", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.RNA-Seq.S2_L007_R2.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R2_001.fastq.gz 2587644125 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 a7695af2-66a2-40dd-adb9-91a33772e7ae 78ec8e717cb44e92b25182c1ee73f086 {"aliquot_tag": "ALQ_4c61ad82", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.RNA-Seq.transcriptome.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.transcriptome.gdc_realn.bam 5933277621 BAM transcriptome harmonized CPTAC3 7d8b0bc3-d272-4814-bb78-d116fe262154 4d65cb8e87d956aa0ee8234c545bd765 {"aliquot_tag": "ALQ_4c61ad82", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.RNA-Seq.transcriptome.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.transcriptome.gdc_realn.bam 11244198338 BAM transcriptome harmonized CPTAC3 8247bc15-7a15-425f-b1fa-974b2c185539 2a4f4a7894147176ca7560ec0f571de6 {"aliquot_tag": "ALQ_36a1fee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.WGS.A C3N-01179 CCRCC WGS tissue_normal CPT0088920009 CPT0088920009.WholeGenome.RP-1303.bam 54025334955 BAM submitted_aligned CPTAC3 8c2ebd62-e915-49de-b72f-9ffe2022a344 19be4fb4fed88a1a5b251652d589aa30 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.WGS.A.hg38 C3N-01179 CCRCC WGS tissue_normal CPT0088920009 b4791282-5fc0-461f-bbf6-bcc761c8c7f6_wgs_gdc_realn.bam 79509618756 BAM harmonized CPTAC3 513bfba6-da3a-4e5e-bb30-871b7e763e25 ac98144838be5e7c1c31ab7e8cfc94ad {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.WGS.N C3N-01179 CCRCC WGS blood_normal CPT0088960002 CPT0088960002.WholeGenome.RP-1303.bam 64282834856 BAM submitted_aligned CPTAC3 fd7aa4cf-5001-4baf-882a-9ba248d047eb 0e00f2862cec8d11a2f81c655033355f {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01179.WGS.N.hg38 C3N-01179 CCRCC WGS blood_normal CPT0088960002 f6445a84-3231-48a8-b433-c6945551e2a9_gdc_realn.bam 96748031516 BAM harmonized CPTAC3 b2e1c88c-6ecd-4d24-8612-4e788daf9c9d 50f1da04e44cff7a86004b3ae35d7a23 {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01179.WGS.T C3N-01179 CCRCC WGS tumor CPT0088900009 CPT0088900009.WholeGenome.RP-1303.bam 66092434631 BAM submitted_aligned CPTAC3 0a0c12cf-3827-406e-9e36-ae2ef38fd13e 479719231e15a926f60488a509d157ea {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.WGS.T.hg38 C3N-01179 CCRCC WGS tumor CPT0088900009 33eb4b5e-1c4e-4d98-b6c0-5753fe05740e_gdc_realn.bam 97566593847 BAM harmonized CPTAC3 14534e70-f589-4bf0-9fb7-25f0c7725131 28c96aaec66383e6e673861aa64fc353 {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.WXS.A C3N-01179 CCRCC WXS tissue_normal CPT0088920009 CPT0088920009.WholeExome.RP-1303.bam 25424375645 BAM submitted_aligned CPTAC3 abdd9a29-d2ed-4db1-9620-be557f54a99f 9c318eedc42f3bbcb12360a0e5de3e2c {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.WXS.A.hg38 C3N-01179 CCRCC WXS tissue_normal CPT0088920009 b4791282-5fc0-461f-bbf6-bcc761c8c7f6_wxs_gdc_realn.bam 34014417193 BAM harmonized CPTAC3 64119e28-53ce-4963-b0a1-e52383dfdfd3 3b6c0abdd0901e92a8c6a9851bec45a5 {"aliquot_tag": "ALQ_dcdeb013", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01179.WXS.N C3N-01179 CCRCC WXS blood_normal CPT0088960002 CPT0088960002.WholeExome.RP-1303.bam 34431920908 BAM submitted_aligned CPTAC3 c590f011-33ca-4e3b-88fd-a4a68af7f64f e50a24ee2f7202debcf0087cae3a95b6 {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01179.WXS.N.hg38 C3N-01179 CCRCC WXS blood_normal CPT0088960002 f6445a84-3231-48a8-b433-c6945551e2a9_gdc_realn.bam 47182602500 BAM harmonized CPTAC3 9c91ae41-0a16-4cdf-8d33-dd72c519b7d1 d92a892c5de1aa4b52e640e1746cf3b1 {"aliquot_tag": "ALQ_be8ccf5b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01179.WXS.T C3N-01179 CCRCC WXS tumor CPT0088900009 CPT0088900009.WholeExome.RP-1303.bam 28646563541 BAM submitted_aligned CPTAC3 44f060cd-cf8f-4aa2-8972-185775e8634e 29aafd6a39ef2566f5df69afcb520429 {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01179.WXS.T.hg38 C3N-01179 CCRCC WXS tumor CPT0088900009 33eb4b5e-1c4e-4d98-b6c0-5753fe05740e_gdc_realn.bam 38866696650 BAM harmonized CPTAC3 7cb3a8e9-1d01-460d-9d52-c3a41c4bce29 92abac37b4d0ac711ea2e03540931def {"aliquot_tag": "ALQ_a61ee373", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.MethArray.Green.T C3N-01180 CCRCC Methylation_Array tumor CPT0088970009 202178770109_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0297e22a-faba-4273-a6b5-81910187cf0a d367284c2c40025f117d9563914dd3e8 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.MethArray.Red.T C3N-01180 CCRCC Methylation_Array tumor CPT0088970009 202178770109_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 c0619a04-1c86-48b1-98a9-2a499547370f 0ba0639c44fe326a00b8dd38ca67f600 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.miRNA-Seq.S18_L006_R1.T C3N-01180 CCRCC miRNA-Seq tumor CPT0088970006 181012_UNC32-K00270_0124_AH223CBBXY_TCATTC_S18_L006_R1_001.unaln.bam 157141358 BAM S18_L006_R1 submitted_unaligned CPTAC3 c2d85351-2ed5-42ca-bf8a-c5e0410dfb67 739bf53f5f36c4904f01a387d3f37777 {"aliquot_tag": "ALQ_848122f2", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.miRNA-Seq.T.hg38 C3N-01180 CCRCC miRNA-Seq tumor CPT0088970006 fce09e16-89f4-438b-9d9f-fe04a3cfbf0a_mirnaseq_gdc_realn.bam 176004214 BAM harmonized CPTAC3 38ba633f-f15f-48a1-a6ed-c36bfe997591 00cef29ad32601183d14d2e4500cc538 {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.RNA-Seq.chimeric.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.chimeric.gdc_realn.bam 40577493 BAM chimeric harmonized CPTAC3 c136ff4e-ff22-4ee6-8067-73c0e22a66b8 270b440caa39f39b79bee81ff4d7907c {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.RNA-Seq.genomic.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.genomic.gdc_realn.bam 7307407565 BAM genomic harmonized CPTAC3 f86980df-3131-4a52-8166-a824c08b2527 a22c9b51ddba4a427f3ed5be320b0430 {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.RNA-Seq.S13_L004_R1.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R1_001.fastq.gz 3645122689 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 d07af196-f7b8-42ef-b95a-4403e8ede3f3 58968de66ae9232546847ab5f703f202 {"aliquot_tag": "ALQ_848122f2", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.RNA-Seq.S13_L004_R2.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R2_001.fastq.gz 3897734313 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 59baaed9-9a10-4bfe-9657-5ac24fdbd053 9063a284837d98374e6e2dff30863f37 {"aliquot_tag": "ALQ_848122f2", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.RNA-Seq.transcriptome.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.transcriptome.gdc_realn.bam 10661221615 BAM transcriptome harmonized CPTAC3 861830de-bb5d-45f4-8525-6942e0749d3a 6a7ca2192054376fd0fb30ccc93150dd {"aliquot_tag": "ALQ_848122f2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.scRNA-Seq.S4_L003_R1.T C3N-01180 CCRCC scRNA-Seq tumor CPT0088970013 20220127_WUSTL_TWFU-CPT0088970013-Y1N1Z1_1Bn1_1_AAGGGCCGCA+CTGATTCCTC_S4_L003_R1_001.fastq.gz 6080929668 FASTQ S4_L003_R1 submitted_unaligned CPTAC3 3670a1d8-e41f-4ed1-b823-2ea7edf35a18 e496cabf15c2b1c31e79dbb80ac8d94a {"aliquot_tag": "ALQ_edf0e73c", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01180.scRNA-Seq.S4_L003_R2.T C3N-01180 CCRCC scRNA-Seq tumor CPT0088970013 20220127_WUSTL_TWFU-CPT0088970013-Y1N1Z1_1Bn1_1_AAGGGCCGCA+CTGATTCCTC_S4_L003_R2_001.fastq.gz 20888751929 FASTQ S4_L003_R2 submitted_unaligned CPTAC3 54bcd617-1468-4c39-bf55-9761602d5c43 4ae0bebdb83791746c14d0da74e119e4 {"aliquot_tag": "ALQ_edf0e73c", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01180.WGS.N C3N-01180 CCRCC WGS blood_normal CPT0089010002 CPT0089010002.WholeGenome.RP-1303.bam 65469560970 BAM submitted_aligned CPTAC3 f5d9c481-d4c6-4b37-aa82-5d2b9c23d96a 32b3c893635e13da71e3e358f81665ba {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01180.WGS.N.hg38 C3N-01180 CCRCC WGS blood_normal CPT0089010002 05e1d252-9d46-47b7-9948-9b5dd30e67e3_gdc_realn.bam 97287608468 BAM harmonized CPTAC3 bcc33626-4667-47c9-a402-8746520a80dd 0aaceb35d90ee316168690cb3c12e7b6 {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01180.WGS.T C3N-01180 CCRCC WGS tumor CPT0088970009 CPT0088970009.WholeGenome.RP-1303.bam 66457230201 BAM submitted_aligned CPTAC3 a8e8e902-9cf8-4ed2-a74a-627eb36fe03f ce8e05bf68d3c84789823cd792886af7 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.WGS.T.hg38 C3N-01180 CCRCC WGS tumor CPT0088970009 5aa36474-344c-4507-9cf4-b2d8c03b34c0_gdc_realn.bam 99294390661 BAM harmonized CPTAC3 1dcc1020-894b-4352-826d-0da39a09de2b 1a7f058475b1f8ba79c8349a9b608393 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.WXS.N C3N-01180 CCRCC WXS blood_normal CPT0089010002 CPT0089010002.WholeExome.RP-1303.bam 33484990965 BAM submitted_aligned CPTAC3 abeeb53c-2069-47b1-996c-ca3d02748269 ff157d14f5cd0f9d2d132d1c8b5c6345 {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01180.WXS.N.hg38 C3N-01180 CCRCC WXS blood_normal CPT0089010002 05e1d252-9d46-47b7-9948-9b5dd30e67e3_gdc_realn.bam 45574756616 BAM harmonized CPTAC3 cbdc358a-4144-4c44-b7eb-745fc55db239 a2f43bdea8e8a45c2af84cf6130bd0ff {"aliquot_tag": "ALQ_8dd44937", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01180.WXS.T C3N-01180 CCRCC WXS tumor CPT0088970009 CPT0088970009.WholeExome.RP-1303.bam 27294197186 BAM submitted_aligned CPTAC3 5c18e392-714d-4f5d-8488-d20ace442cf0 4cd46966f633c83e651d3042b67084b4 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01180.WXS.T.hg38 C3N-01180 CCRCC WXS tumor CPT0088970009 5aa36474-344c-4507-9cf4-b2d8c03b34c0_gdc_realn.bam 37234625238 BAM harmonized CPTAC3 d6aad1de-5c2e-4ea3-9400-8ed05ad799ff b6f391ef25ef3b52b59ae2d5fe76ac01 {"aliquot_tag": "ALQ_143e3f63", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01191.miRNA-Seq.A.hg38 C3N-01191 GBM miRNA-Seq tissue_normal CPT0402700010 197c71a9-d007-4a10-b4ee-1f3827d66ce5_mirnaseq_gdc_realn.bam 316551357 BAM harmonized CPTAC3 cd09bf30-6dcd-458b-bef9-d228867b0b9d 7de09daece77e8b506e00adc716cbe71 {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.miRNA-Seq.S31_L005_R1.A C3N-01191 GBM miRNA-Seq tissue_normal CPT0402700010 210702_UNC32-K00270_0289_AHKJ22BBXY_CATGGC_S31_L005_R1_001.unaln.bam 290053129 BAM S31_L005_R1 submitted_unaligned CPTAC3 d3dd4a04-44a7-4422-8f6d-7ace7888b09b f9c1805f36fe57ad2fcc3ade02116dc8 {"aliquot_tag": "ALQ_d6aa1e11", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.RNA-Seq.chimeric.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.chimeric.gdc_realn.bam 164817895 BAM chimeric harmonized CPTAC3 44e78f64-a4f1-47c9-84e7-9808033fee9c 66661334d4660f8b3a92cad7cc71b509 {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.RNA-Seq.genomic.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.genomic.gdc_realn.bam 9213919004 BAM genomic harmonized CPTAC3 9a2efa90-6c0f-488f-9866-843156c927d4 b99eb30f75d1bea9c986ae8b94efeabe {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.RNA-Seq.S20_L005_R1.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R1_001.fastq.gz 4292142230 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4 cd279c856a08eda5e1d7be53c70c7e1e {"aliquot_tag": "ALQ_d6aa1e11", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.RNA-Seq.S20_L005_R2.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R2_001.fastq.gz 4572187365 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 7ee179a1-f928-4601-b0a9-647dad31f4fd f09cf1f6aba78db7f6b0ceb48ba9958e {"aliquot_tag": "ALQ_d6aa1e11", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.RNA-Seq.transcriptome.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.transcriptome.gdc_realn.bam 10970767592 BAM transcriptome harmonized CPTAC3 a8be9106-90c4-4910-97ad-191e7eed5551 54355df7e132faa403742d3bf3ff4d1b {"aliquot_tag": "ALQ_d6aa1e11", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.WXS.A C3N-01191 GBM WXS tissue_normal CPT0402700007 CPT0402700007.WholeExome.RP-1303.bam 28467491827 BAM submitted_aligned CPTAC3 db0aa74f-75b0-4c87-8267-7e7d449e76db 9f1fef72d8b687403dd2a44ed089e14b {"aliquot_tag": "ALQ_51d5baf3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01191.WXS.A.hg38 C3N-01191 GBM WXS tissue_normal CPT0402700007 a926769c-4f8b-489a-9339-88c74a323423_wxs_gdc_realn.bam 39150535552 BAM harmonized CPTAC3 a40bdbe8-5de1-484e-964f-ff03bf16e848 9471241473659d120b5a597b1c220138 {"aliquot_tag": "ALQ_51d5baf3", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01191.WXS.N C3N-01191 GBM WXS blood_normal CPT0402750002 CPT0402750002.WholeExome.RP-1303.bam 35545540392 BAM submitted_aligned CPTAC3 42123d2d-53fd-445f-a834-939085063605 50df2bff8cfcd5e146602b6b3d3538b5 {"aliquot_tag": "ALQ_e95fc10c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01191.WXS.N.hg38 C3N-01191 GBM WXS blood_normal CPT0402750002 a0970679-8442-4057-b84f-477450a88256_wxs_gdc_realn.bam 49650135090 BAM harmonized CPTAC3 693176e7-e87c-49ef-9740-6f39f73e2633 3ca2a31532da05cb1eafd21bf240df58 {"aliquot_tag": "ALQ_e95fc10c", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01192.MethArray.Green.T C3N-01192 GBM Methylation_Array tumor CPT0087950009 202234380024_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2658143c-074b-405e-9f3e-4abc3cb2e007 58f0f469c81607a77b2446e52c485695 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.MethArray.Red.T C3N-01192 GBM Methylation_Array tumor CPT0087950009 202234380024_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 2f11936a-8f5a-4124-b086-2c10ac8ab4c5 ccaaa82be14be0f7e40283e5c8650d9a {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.miRNA-Seq.S44_L008_R1.T C3N-01192 GBM miRNA-Seq tumor CPT0087950006 180724_UNC32-K00270_0106_BHWK3MBBXX_GAGTGG_S44_L008_R1_001.unaln.bam 292910804 BAM S44_L008_R1 submitted_unaligned CPTAC3 d58ca110-1c3f-48ff-86a7-d0a5b3dde7d7 16509f98ee05d30b9ce4e631b71d35f5 {"aliquot_tag": "ALQ_809017b", "sample": "S44", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.miRNA-Seq.T.hg38 C3N-01192 GBM miRNA-Seq tumor CPT0087950006 239de7c6-89c3-4b9d-8222-5d0124e73f76_mirnaseq_gdc_realn.bam 316850254 BAM harmonized CPTAC3 f60a6cd3-d6e2-4a87-b6a8-f564a6c77f9a f1ccaad97faec64607b6982ac986d57a {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.RNA-Seq.chimeric.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.chimeric.gdc_realn.bam 53093648 BAM chimeric harmonized CPTAC3 d0a9c595-2395-42fc-a892-d5c6d8f0ff7f e72c7c25d323d76547a87f3f56dc1727 {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.RNA-Seq.genomic.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.genomic.gdc_realn.bam 10153664616 BAM genomic harmonized CPTAC3 4ff8f311-10e7-483b-8e86-5adb6b1a02dd 0ac32de7b0064b68e48a339a3537c79c {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.RNA-Seq.S22_L008_R1.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R1_001.fastq.gz 4559078143 FASTQ S22_L008_R1 submitted_unaligned CPTAC3 8586880b-19f8-43da-a85b-7ffc96dcfe6e 918d088606e2947da452986af766d2ae {"aliquot_tag": "ALQ_809017b", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.RNA-Seq.S22_L008_R2.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R2_001.fastq.gz 5032932202 FASTQ S22_L008_R2 submitted_unaligned CPTAC3 400ea065-5905-41ba-86de-b5986720714d 89b608f4be723544235892fd941c39ba {"aliquot_tag": "ALQ_809017b", "sample": "S22", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.RNA-Seq.transcriptome.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.transcriptome.gdc_realn.bam 12419851304 BAM transcriptome harmonized CPTAC3 ebc65c90-31f6-49c0-ad44-c3655bbb3a8c 7cf3e5c5556d441a3acf6b36cca2bf17 {"aliquot_tag": "ALQ_809017b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.WGS.N C3N-01192 GBM WGS blood_normal CPT0087980002 CPT0087980002.WholeGenome.RP-1303.bam 69705723979 BAM submitted_aligned CPTAC3 8316a058-3015-4a6f-858e-7d3958f255ec 6f41be0674653ebc0c0e14a4005fa669 {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01192.WGS.N.hg38 C3N-01192 GBM WGS blood_normal CPT0087980002 300522b0-ac2f-4ec7-a5ae-cd55519df19c_wgs_gdc_realn.bam 102084073930 BAM harmonized CPTAC3 ff0b98e8-93b8-4492-91ee-259293a5571a ee2d3dc529e427e8709e0b8efcd0895c {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01192.WGS.T C3N-01192 GBM WGS tumor CPT0087950009 CPT0087950009.WholeGenome.RP-1303.bam 66980928033 BAM submitted_aligned CPTAC3 9b796c09-8256-4eae-9ddd-be685b35924d 71398d501fa658b4bea4d46d12921748 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.WGS.T.hg38 C3N-01192 GBM WGS tumor CPT0087950009 b4dc9536-147b-46cf-b704-dc9244cb3980_wgs_gdc_realn.bam 99753558206 BAM harmonized CPTAC3 71abf089-0d4a-4f62-9691-f10844c265d1 956e2d75f24d45815e4121cf6c014b41 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.WXS.N C3N-01192 GBM WXS blood_normal CPT0087980002 CPT0087980002.WholeExome.RP-1303.bam 55467664484 BAM submitted_aligned CPTAC3 2c99b783-d1ee-40c2-81b4-f6083f05943b ff53694d29ff5d8f8d7820bcd8e0cfb1 {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01192.WXS.N.hg38 C3N-01192 GBM WXS blood_normal CPT0087980002 300522b0-ac2f-4ec7-a5ae-cd55519df19c_wxs_gdc_realn.bam 74498408960 BAM harmonized CPTAC3 69f9c1f6-3720-4de1-a3fa-23560dd44808 27ae4c2e7cc80b725cb7102c78855e43 {"aliquot_tag": "ALQ_f7f401d3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01192.WXS.T C3N-01192 GBM WXS tumor CPT0087950009 CPT0087950009.WholeExome.RP-1303.bam 48554466558 BAM submitted_aligned CPTAC3 e1c25fd3-847b-40a1-9f40-d34f29ad3d53 f2619f75dc0457970ff35b8d481f9486 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01192.WXS.T.hg38 C3N-01192 GBM WXS tumor CPT0087950009 b4dc9536-147b-46cf-b704-dc9244cb3980_wxs_gdc_realn.bam 66820989081 BAM harmonized CPTAC3 09439c02-183b-4af9-a4dd-3b6376512893 85d84a0f65c281d8f27553b902de95d0 {"aliquot_tag": "ALQ_98b61cea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.MethArray.Green.A C3N-01194 LSCC Methylation_Array tissue_normal CPT0079060009 203219670066_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 40cc20ed-f304-41bd-b1d0-1acea9be9793 31bf192938efc1376d8619dccea77dec {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.MethArray.Green.T C3N-01194 LSCC Methylation_Array tumor CPT0079050009 202178770045_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c431e60b-05d8-44f1-8217-2051fce8f0ef 9dc8945097bbc0ac61aa4b1059aa0272 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.MethArray.Red.A C3N-01194 LSCC Methylation_Array tissue_normal CPT0079060009 203219670066_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 fecd6868-be2c-405d-9b12-a3ca3115184c bc9890b18b9bd47b5f8500b609c51a6c {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.MethArray.Red.T C3N-01194 LSCC Methylation_Array tumor CPT0079050009 202178770045_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 fac05581-20cd-4ee3-9fc5-85c2507cfb7a a4bec145573aa6661d4ac9b1be0e0d30 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.miRNA-Seq.A.hg38 C3N-01194 LSCC miRNA-Seq tissue_normal CPT0079060006 3d0c36e1-ab8b-4672-9dde-466ff17b71b0_mirnaseq_gdc_realn.bam 289465460 BAM harmonized CPTAC3 bd56520e-8572-495d-8bee-4f0f96c1fc6f ae3bfbf19778af3133542a6c327e05f5 {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.miRNA-Seq.S34_L006_R1.A C3N-01194 LSCC miRNA-Seq tissue_normal CPT0079060006 181113_UNC31-K00269_0164_AH23NNBBXY_TAGCTT_S34_L006_R1_001.unaln.bam 264130426 BAM S34_L006_R1 submitted_unaligned CPTAC3 887f80ef-5f29-4197-b31c-a456c86b8df8 21028646163afe33da9202e580133e43 {"aliquot_tag": "ALQ_e1b94392", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.miRNA-Seq.S36_L008_R1.T C3N-01194 LSCC miRNA-Seq tumor CPT0079050006 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L008_R1_001.unaln.bam 174848729 BAM S36_L008_R1 submitted_unaligned CPTAC3 cb40e685-a34f-48a0-89a5-eb93fb80ffad fcc412a7da58773c4ab6ea04bccaf84c {"aliquot_tag": "ALQ_a6193942", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.miRNA-Seq.T.hg38 C3N-01194 LSCC miRNA-Seq tumor CPT0079050006 a5e454ee-0c7d-4a5a-879f-856d7600178a_mirnaseq_gdc_realn.bam 202538118 BAM harmonized CPTAC3 ed63f126-d531-4f3d-806a-d81af15a080f 45efe66aa0121b6795f2888a5a4c5dc1 {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.RNA-Seq.chimeric.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.chimeric.gdc_realn.bam 48329890 BAM chimeric harmonized CPTAC3 f48f56ed-92ca-483a-a8bc-700e7b4a7efb 1520f446ab5d806ad027b52382f00ecb {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.RNA-Seq.chimeric.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.chimeric.gdc_realn.bam 158433579 BAM chimeric harmonized CPTAC3 03acb33a-a706-4089-9060-047405485be0 f46c0ca6481ab03d0332d7c9dccaf09f {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.RNA-Seq.genomic.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.genomic.gdc_realn.bam 9605289202 BAM genomic harmonized CPTAC3 1b190480-217d-496b-9f4a-5d6015f62de4 eacdfaa05e771f285a25f6dccd5e775e {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.RNA-Seq.genomic.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.genomic.gdc_realn.bam 8497339252 BAM genomic harmonized CPTAC3 04341626-a157-4bdc-b406-3e28bf2ba14c 3879668d7ed3b7f1f66dd4ccc961bcc7 {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.RNA-Seq.S18_L005_R1.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4284636321 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 c8f80524-a45c-47de-9262-48c781488318 1b3e0d5d616159dcbda47b9a20591d5c {"aliquot_tag": "ALQ_e1b94392", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.RNA-Seq.S18_L005_R2.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4679137235 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 5ca5e4b2-d3bf-47b9-893c-35b8caf13fca 9fa514176d2224d2a8f8b14e1ba00f0f {"aliquot_tag": "ALQ_e1b94392", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.RNA-Seq.S2_L001_R1.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 3917404062 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 dfc915d2-984c-466f-85e0-12a68f0413ad 149cb8a9c167dca2103a8635d89037e9 {"aliquot_tag": "ALQ_a6193942", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.RNA-Seq.S2_L001_R2.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 4230230199 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 fe123d94-ffe4-4a32-8729-df53114e81b9 ca5cf5fac5627dc016d1031b4ae07bc2 {"aliquot_tag": "ALQ_a6193942", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.RNA-Seq.transcriptome.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.transcriptome.gdc_realn.bam 11299790638 BAM transcriptome harmonized CPTAC3 a4294fc8-4a30-409e-bcd2-d88fad0ef0e3 7622b7e68c8f649343d74a32ea71bf06 {"aliquot_tag": "ALQ_e1b94392", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.RNA-Seq.transcriptome.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.transcriptome.gdc_realn.bam 11079203487 BAM transcriptome harmonized CPTAC3 ed525a96-ab7e-488e-9705-24393e28b46e 4a88b9155aa32995e841df329ef308ae {"aliquot_tag": "ALQ_a6193942", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.WGS.A C3N-01194 LSCC WGS tissue_normal CPT0079060009 CPT0079060009.WholeGenome.RP-1303.bam 52291412351 BAM submitted_aligned CPTAC3 1618b45e-373b-442f-b1cf-080e4120cfff 45dded24f2208c49eefa4505f755ee1b {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.WGS.A.hg38 C3N-01194 LSCC WGS tissue_normal CPT0079060009 5d4a1c91-6ea9-4957-bf09-2e47110b99c6_wgs_gdc_realn.bam 75933605428 BAM harmonized CPTAC3 79b4667f-a822-4230-a18d-e659697f618f 264caa0b3368cc60e02f7a632c9cd26d {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.WGS.N C3N-01194 LSCC WGS blood_normal CPT0079090002 CPT0079090002.WholeGenome.RP-1303.bam 73567985001 BAM submitted_aligned CPTAC3 c216401d-601c-4fbe-a08a-f4230c28cddc 4d1a3c8ff373327c5d3673e3c413b702 {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01194.WGS.N.hg38 C3N-01194 LSCC WGS blood_normal CPT0079090002 8e7cdb9e-d990-47dd-9487-ef12fbe05cc3_gdc_realn.bam 115706074766 BAM harmonized CPTAC3 fab46b3d-6bde-43a2-8633-1eed8864948d c4a4d6e7102af2c20fe5e09fa368325d {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01194.WGS.T C3N-01194 LSCC WGS tumor CPT0079050009 CPT0079050009.WholeGenome.RP-1303.bam 62022431239 BAM submitted_aligned CPTAC3 c0cea5b5-8301-4404-906b-e713262c1bf8 2ad1ccf3ac545a7ffb5d74a54b7a577f {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.WGS.T.hg38 C3N-01194 LSCC WGS tumor CPT0079050009 7a1a881e-51c3-46c4-bf78-fffcb8fde6b8_gdc_realn.bam 93685031070 BAM harmonized CPTAC3 d178dd49-5ac5-421b-9653-021451682f46 15b88612e2a3ebd3dcb55b722be40b0c {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.WXS.A C3N-01194 LSCC WXS tissue_normal CPT0079060009 CPT0079060009.WholeExome.RP-1303.bam 29230607242 BAM submitted_aligned CPTAC3 aa74901b-3a88-4aa7-9bbf-5769330dc817 40e5ad893461cd536d8b280ce63d087f {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.WXS.A.hg38 C3N-01194 LSCC WXS tissue_normal CPT0079060009 5d4a1c91-6ea9-4957-bf09-2e47110b99c6_wxs_gdc_realn.bam 39685634224 BAM harmonized CPTAC3 e8b2e887-2d06-4bc3-a352-928a16162f5e 03cc7bdb5ce3147d257e74c9a379bfb9 {"aliquot_tag": "ALQ_71065e03", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01194.WXS.N C3N-01194 LSCC WXS blood_normal CPT0079090002 CPT0079090002.WholeExome.RP-1303.bam 23620464102 BAM submitted_aligned CPTAC3 ea3322bd-44a4-41f8-a82a-84306e5a6b8b 00b46d26b8a1ccace3e104556eb7a426 {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01194.WXS.N.hg38 C3N-01194 LSCC WXS blood_normal CPT0079090002 8e7cdb9e-d990-47dd-9487-ef12fbe05cc3_gdc_realn.bam 31924995429 BAM harmonized CPTAC3 46d74866-1e75-4cc7-b4ff-edeed248f414 1511ff17fcfb5f6993002c20a5ba922f {"aliquot_tag": "ALQ_6484105a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01194.WXS.T C3N-01194 LSCC WXS tumor CPT0079050009 CPT0079050009.WholeExome.RP-1303.bam 30384955979 BAM submitted_aligned CPTAC3 e2abf1e6-0f35-4c8e-8fc4-3570b16287a1 4ee23eab41c378016c4707b18378f858 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01194.WXS.T.hg38 C3N-01194 LSCC WXS tumor CPT0079050009 7a1a881e-51c3-46c4-bf78-fffcb8fde6b8_gdc_realn.bam 42502208887 BAM harmonized CPTAC3 0774820d-b180-46e1-90c9-6fef4686d7c2 af1e709a4488f5db3d6e1c7c73009069 {"aliquot_tag": "ALQ_36a624d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.MethArray.Green.T C3N-01196 GBM Methylation_Array tumor CPT0078580006 202184990052_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a6edc21c-210f-4540-af31-0e71681253cf 1a11260045e5b122cd8a3083a9b293cf {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.MethArray.Red.T C3N-01196 GBM Methylation_Array tumor CPT0078580006 202184990052_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 36140f52-6719-44e8-866e-83c278e9e99c b8b8a19ccdfb60b94d981269fb6419d6 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.miRNA-Seq.S8_L006_R1.T C3N-01196 GBM miRNA-Seq tumor CPT0078580013 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L006_R1_001.unaln.bam 206362742 BAM S8_L006_R1 submitted_unaligned CPTAC3 b3f2e525-38d7-494f-b587-3f293678cc8b 8b369807526a62c21fd0924258b17103 {"aliquot_tag": "ALQ_c142a23a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.miRNA-Seq.T.hg38 C3N-01196 GBM miRNA-Seq tumor CPT0078580013 d17d429b-e4bc-4188-ac35-559f73d39ae0_mirnaseq_gdc_realn.bam 236984162 BAM harmonized CPTAC3 a3d5b935-eef6-4183-af38-c7df1c81b50e ebfad0f3ba227f925abdb23a4ddf4054 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.RNA-Seq.chimeric.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.chimeric.gdc_realn.bam 49301826 BAM chimeric harmonized CPTAC3 a4520135-1db6-4d21-9a1a-436e9c7dbc07 f500129fbbd8c673d9336e8832249af6 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.RNA-Seq.genomic.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.genomic.gdc_realn.bam 8798799871 BAM genomic harmonized CPTAC3 de295c3b-b24b-4cfd-93be-efa5294f8e17 22959709261bd7ee843cf50d8ea6ff26 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.RNA-Seq.S4_L007_R1.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R1_001.fastq.gz 4050665258 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 9cf704de-fe0f-426b-8067-eece3a94120e 50d4c3606258242455ed0a8b2a224108 {"aliquot_tag": "ALQ_c142a23a", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.RNA-Seq.S4_L007_R2.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4408066540 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 0149b324-0f53-4425-aed2-1d785545cce6 80949e8ebd2b158ae3d8a34c8f92af12 {"aliquot_tag": "ALQ_c142a23a", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.RNA-Seq.transcriptome.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.transcriptome.gdc_realn.bam 8193991005 BAM transcriptome harmonized CPTAC3 60f3f6df-050d-4887-87ff-0a26ed58ea96 497883dde1927a1efb9a99c4e1834e66 {"aliquot_tag": "ALQ_c142a23a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.WGS.N C3N-01196 GBM WGS blood_normal CPT0078600002 CPT0078600002.WholeGenome.RP-1303.bam 71018786399 BAM submitted_aligned CPTAC3 cb8193c9-0f40-4226-876c-7b72f711dc20 4fb1144345b56f4f3d63126958f6fabe {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01196.WGS.N.hg38 C3N-01196 GBM WGS blood_normal CPT0078600002 2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 109344171761 BAM harmonized CPTAC3 1f1c0db8-a938-444a-a1b7-d92ead28e401 6cce176a6f820703ad31842d804441b7 {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01196.WGS.T C3N-01196 GBM WGS tumor CPT0078580006 CPT0078580006.WholeGenome.RP-1303.bam 68162180374 BAM submitted_aligned CPTAC3 310215da-2316-478f-8fb2-1019b95b06ec d209cc657aaa72297a87fc7b10a5f810 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.WGS.T.hg38 C3N-01196 GBM WGS tumor CPT0078580006 f5139e18-95b6-4359-8018-f511b3cdbac5_gdc_realn.bam 102911297394 BAM harmonized CPTAC3 478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27 326931de2edf8ee8446073f328227f60 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.WXS.N C3N-01196 GBM WXS blood_normal CPT0078600002 CPT0078600002.WholeExome.RP-1303.bam 30617793152 BAM submitted_aligned CPTAC3 2acbdf4b-c9a6-4c95-8fdc-52c519f9530a 24a4abb8ebbe3d3d71fbafc493895a30 {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01196.WXS.N.hg38 C3N-01196 GBM WXS blood_normal CPT0078600002 2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 41828914319 BAM harmonized CPTAC3 e0050b57-78e0-4a0f-93b8-2b2d2d66f0e9 7bb19d4d2f160dbe460a6bfca1b669aa {"aliquot_tag": "ALQ_19ba9a82", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01196.WXS.T C3N-01196 GBM WXS tumor CPT0078580006 CPT0078580006.WholeExome.RP-1303.bam 31188011031 BAM submitted_aligned CPTAC3 fb79c6b2-9c6b-4219-97e3-414ef4eb9e1b 60430a45e2d163600e3ac671b21b396e {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01196.WXS.T.hg38 C3N-01196 GBM WXS tumor CPT0078580006 f5139e18-95b6-4359-8018-f511b3cdbac5_gdc_realn.bam 42631117716 BAM harmonized CPTAC3 cebdcd76-9051-4e6b-bde0-8a8a1bb3b545 48d464bdc9de0c528d81872518383790 {"aliquot_tag": "ALQ_a83367f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01197.MethArray.Green.T C3N-01197 GBM Methylation_Array tumor CPT0078480013 202178770109_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 45a231fd-0b3d-4c01-acee-31bae49b662b 354697f09318dc70ed3459a9df8ef7b0 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.MethArray.Red.T C3N-01197 GBM Methylation_Array tumor CPT0078480013 202178770109_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 352712cf-df49-4c7f-a1a0-20eee1d36399 d3c628c213e9acb98cb7287f8554fecd {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.miRNA-Seq.A.hg38 C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 600530ed-b90c-41b1-99c2-ac49a4e0c777_mirnaseq_gdc_realn.bam 293890942 BAM harmonized CPTAC3 9b91c568-2074-483d-83fc-60e02c14c5b0 06f28eb5fea967dcc6eeef9aa1ad10ec {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.miRNA-Seq.S17_L005_R1.A C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGGCC_S17_L005_R1_001.unaln.bam 148198335 BAM S17_L005_R1 submitted_unaligned CPTAC3 b453177a-e844-4435-ae74-c4af27fcd7bd a16c60558c47218a0607a30b7c351699 {"aliquot_tag": "ALQ_f4956881", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.miRNA-Seq.S18_L003_R1.T C3N-01197 GBM miRNA-Seq tumor CPT0078480009 181113_UNC31-K00269_0164_AH23NNBBXY_TAATCG_S18_L003_R1_001.unaln.bam 298106933 BAM S18_L003_R1 submitted_unaligned CPTAC3 51dd4fa7-3518-4a88-94bb-5adba591ef98 2b92da45ba6c81f77463b866aceed47c {"aliquot_tag": "ALQ_f3d0a9c0", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.miRNA-Seq.S20_L002_R1.A C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L002_R1_001.unaln.bam 123101063 BAM S20_L002_R1 submitted_unaligned CPTAC3 3ed18de1-4d58-4d6f-813e-3cb48b84fc78 cc4bfcee9dbfdeef27ab13cb0ca1f6ac {"aliquot_tag": "ALQ_f4956881", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.miRNA-Seq.T.hg38 C3N-01197 GBM miRNA-Seq tumor CPT0078480009 fc3f80e4-8717-45c5-9248-98daf00e5564_mirnaseq_gdc_realn.bam 328842663 BAM harmonized CPTAC3 69198177-80d7-4645-801d-47e40d6fcaca 41de271c56fa13e66debd10122fb6ac4 {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.RNA-Seq.chimeric.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.chimeric.gdc_realn.bam 206730101 BAM chimeric harmonized CPTAC3 e62afb1f-ca78-4c5d-aba7-481f7bf9789b a9691b3de53d1fc53820b2e4314941f4 {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.RNA-Seq.chimeric.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.chimeric.gdc_realn.bam 58839962 BAM chimeric harmonized CPTAC3 deb70bba-d681-491a-a4c5-25e61d0bb738 38da9d1804051ac99b68107db76e1b6d {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.RNA-Seq.genomic.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.genomic.gdc_realn.bam 7339367256 BAM genomic harmonized CPTAC3 ffe3453d-a051-4309-ad40-267a041fcc47 e4b4299d3563a2b8719585ad58710c4a {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.RNA-Seq.genomic.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.genomic.gdc_realn.bam 8774243817 BAM genomic harmonized CPTAC3 7fc90181-3c1b-46c8-8219-cda94cdbf759 4e759a8e9a147dd7d33c726dea5d65a9 {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.RNA-Seq.S5_L008_R1.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3932675598 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 75e83f5d-ad37-4018-ae11-bc247d76bf0a 16d19bae83e24097ad9fb909f41ead42 {"aliquot_tag": "ALQ_f3d0a9c0", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.RNA-Seq.S5_L008_R2.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4335422641 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 7704b4c6-fc08-4876-9071-7b027ecc807e f89de0faf11f827abc86bf65fac4ab09 {"aliquot_tag": "ALQ_f3d0a9c0", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.RNA-Seq.S77_L008_R1.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ S77_L008_R1 submitted_unaligned CPTAC3 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 a0584cec511dc00d3a67653e09522e01 {"aliquot_tag": "ALQ_f4956881", "sample": "S77", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.RNA-Seq.S77_L008_R2.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R2_001.fastq.gz 3501805122 FASTQ S77_L008_R2 submitted_unaligned CPTAC3 3746a172-d4af-4f52-9dd9-01e6db58f3d7 ee526db09d85ec629a3ca1f93375bd87 {"aliquot_tag": "ALQ_f4956881", "sample": "S77", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.RNA-Seq.transcriptome.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.transcriptome.gdc_realn.bam 7571038644 BAM transcriptome harmonized CPTAC3 e31563aa-79a2-460f-ae72-f127fdefcbbb c5f187ddc9478a22245eb4d5bcfe9ff9 {"aliquot_tag": "ALQ_f4956881", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.RNA-Seq.transcriptome.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.transcriptome.gdc_realn.bam 8979310482 BAM transcriptome harmonized CPTAC3 dd93d1cf-5708-477d-997c-f337cd540ff8 b300de4054511d801fe2a7b040249a7f {"aliquot_tag": "ALQ_f3d0a9c0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.WGS.N C3N-01197 GBM WGS blood_normal CPT0078500002 CPT0078500002.WholeGenome.RP-1303.bam 66772005182 BAM submitted_aligned CPTAC3 06bad4e8-1b97-41ad-bbe3-e053c16fca3f 5c992aff6785db66e86a0434c1bb4406 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01197.WGS.N.hg38 C3N-01197 GBM WGS blood_normal CPT0078500002 ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 101210139062 BAM harmonized CPTAC3 8d103cd5-b6ba-499c-b86d-ee90e7722972 1bfd8870fe386bcf70737b557d1dda71 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01197.WGS.T C3N-01197 GBM WGS tumor CPT0078480013 CPT0078480013.WholeGenome.RP-1303.bam 78605674127 BAM submitted_aligned CPTAC3 c8a24121-4eb7-4d42-8835-62bf38c27b67 56882ff859a33ee60f362d0acafc45f3 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.WGS.T.hg38 C3N-01197 GBM WGS tumor CPT0078480013 8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 119236219494 BAM harmonized CPTAC3 69bc2a10-0aee-46d4-8974-e138bea74760 17c0106154f4160e1d04e81a6664e147 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.WXS.A C3N-01197 GBM WXS tissue_normal CPT0402600013 CPT0402600013.WholeExome.RP-1303.bam 17913496431 BAM submitted_aligned CPTAC3 d74445a1-60a3-4d33-a053-cb9ef300db97 c10030ec04c9ce713ddc5bdf8042e14f {"aliquot_tag": "ALQ_84ff9c0e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01197.WXS.A.hg38 C3N-01197 GBM WXS tissue_normal CPT0402600013 e5c26e9d-b137-4370-8344-f888831ec23e_wxs_gdc_realn.bam 24780989364 BAM harmonized CPTAC3 5b38e81d-3373-4106-8528-4730fc388607 c936ae5e8cf8264923ac6e322ef67ada {"aliquot_tag": "ALQ_84ff9c0e", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01197.WXS.N C3N-01197 GBM WXS blood_normal CPT0078500002 CPT0078500002.WholeExome.RP-1303.bam 27122734221 BAM submitted_aligned CPTAC3 2e853e58-065a-4a19-b3cf-1066f8d7dddb 22028a96afde9dbe69c2dd26673a8838 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01197.WXS.N.hg38 C3N-01197 GBM WXS blood_normal CPT0078500002 ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 36637489156 BAM harmonized CPTAC3 ba871c1f-1766-4008-8b79-29ec2148b586 037cce1a0c462d957ade8dda8f3cd8c2 {"aliquot_tag": "ALQ_9f2ee82c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01197.WXS.T C3N-01197 GBM WXS tumor CPT0078480013 CPT0078480013.WholeExome.RP-1303.bam 31119460682 BAM submitted_aligned CPTAC3 742678c4-a327-4aef-be8d-38b26605cb19 1a1a4aa605f5b01ab0b965c616db064b {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01197.WXS.T.hg38 C3N-01197 GBM WXS tumor CPT0078480013 8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 43619971997 BAM harmonized CPTAC3 813f42ab-91e9-4dbc-8d09-bf15289946f8 9bb05be85ddad759ddbc130f235cfa58 {"aliquot_tag": "ALQ_a1e719f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01199.MethArray.Green.T C3N-01199 GBM Methylation_Array tumor CPT0457680011 205987780179_R05C01_Grn.idat 13677940 IDAT Green NA CPTAC3 7cfef310-16d3-4e83-ade2-cab54a591e2a df039c0706457135585e665474873fa2 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01199.MethArray.Red.T C3N-01199 GBM Methylation_Array tumor CPT0457680011 205987780179_R05C01_Red.idat 13677940 IDAT Red NA CPTAC3 82e35981-d14d-4901-b85a-0da82e7dbf87 e28beecf5bc080a642ce933c92e170b1 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01199.miRNA-Seq.S7_L003_R1.T C3N-01199 GBM miRNA-Seq tumor CPT0457680008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTATAC_S7_L003_R1_001.unaln.bam 264368830 BAM S7_L003_R1 submitted_unaligned CPTAC3 64dab22d-ddf0-4ceb-9775-95cb13aba156 63b556759c4323d4308c452bf5397ad1 {"aliquot_tag": "ALQ_209e1ec5", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01199.miRNA-Seq.T.hg38 C3N-01199 GBM miRNA-Seq tumor CPT0457680008 35e119ee-ff02-4ac2-9cfa-bc26defda320_mirnaseq_gdc_realn.bam 301722755 BAM harmonized CPTAC3 1d9c73a5-81bc-451c-a43a-d906405f7445 38c44fa8740549cf939d0ae836fe13d0 {"aliquot_tag": "ALQ_209e1ec5", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01199.RNA-Seq.genomic.T.hg38 C3N-01199 GBM RNA-Seq tumor CPT0457680008 0e56f6aa-3dc2-41bc-aefa-d572e56f3e73.rna_seq.genomic.gdc_realn.bam 4799661040 BAM genomic harmonized CPTAC3 708b5ad7-e687-4227-a80a-0de74a892c12 925f65f81a6175898428e52a011b67a8 {"aliquot_tag": "ALQ_209e1ec5", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01199.RNA-Seq.S4_L006_R1.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R1_001.fastq.gz 5000286535 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 742a45a1-2eb8-44d5-912e-8747b99a93d4 2153ef9bd3c1d42588e4749539a8fdbf {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01199.RNA-Seq.S4_L006_R2.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R2_001.fastq.gz 5203845866 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 d457808c-dc8e-4904-9c85-9a6c5fff4b0a 02bce17f1695973dd385d8cea6689575 {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01199.WGS.N C3N-01199 GBM WGS blood_normal CPT0402850001 CPT0402850001.WholeGenome.RP-2158.bam 60409941422 BAM submitted_aligned CPTAC3 9ac6dbcf-a44d-4871-bc05-54e7ad5b79da bd52da88c8c74ad14e85d9a240018fc4 {"aliquot_tag": "ALQ_81002263", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01199.WGS.T C3N-01199 GBM WGS tumor CPT0457680011 CPT0457680011.WholeGenome.RP-2158.bam 115148443436 BAM submitted_aligned CPTAC3 ff7d7777-36ac-47c6-8c34-7a0fa07b17c8 62b873808eccd22e0b3272f8473fdc60 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01200.DUP_3a5a9d02.miRNA-Seq.S26_L002_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L002_R1_001.unaln.bam 241941968 BAM S26_L002_R1 submitted_unaligned CPTAC3 61f7977f-8b97-47aa-b0bb-192d3ec71e0b 240422199a8feb2dc4a5680bee449dc1 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_3a5a9d02.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 daec41c7-dc35-4bee-bb66-94e95108d429_mirnaseq_gdc_realn.bam 268769840 BAM harmonized CPTAC3 8feda69f-b67c-4209-b8b8-9d2df3df00ca d37a9dfd293460ee9f9e09c7085d41dd {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_3a5a9d02.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.chimeric.gdc_realn.bam 70328673 BAM chimeric harmonized CPTAC3 57af4e09-abf7-4d40-93dc-49108577f9dd e1211762a0a1130cd82aae4e2e03a074 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_3a5a9d02.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.genomic.gdc_realn.bam 8820437909 BAM genomic harmonized CPTAC3 87d3f301-3322-4bd1-80b6-d156f8a98656 b1aeb4e31ff2f3e92551a11e656ae554 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_3a5a9d02.RNA-Seq.S8_L002_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R1_001.fastq.gz 4438109303 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 30628661-05d5-4fe1-be42-ee30dce69ec0 3fe79581d9ef6d827a13ec2628f09aa0 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_3a5a9d02.RNA-Seq.S8_L002_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R2_001.fastq.gz 4848622324 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 10047d32-3565-4e59-be8d-d18f00cf4da7 acaf751e70b615b512f97cf10aeadd70 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_3a5a9d02.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.transcriptome.gdc_realn.bam 11325945246 BAM transcriptome harmonized CPTAC3 8874fcac-0adf-4854-891f-98b80e838d5b 8142a838db32e50470f84496caf3655a {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_6b3a9db.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075120012 204372030161_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d258d649-b531-429f-a9aa-407f445dcf13 706a2be41697b6ada0062261c87a6003 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_6b3a9db.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075120012 204372030161_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 b76ec06c-d83c-4147-9651-07b7ac4500ae b610cd049e08b800f2ba3fc2d4b5e1ff {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_6b3a9db.WGS.T C3N-01200 CCRCC WGS tumor CPT0075120012 CPT0075120012.WholeGenome.RP-2158.bam 40340711658 BAM submitted_aligned CPTAC3 861e17a6-edbd-43bf-ba45-b05f70c40c8a 5457297c740ee253de88dfd63ee75da9 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_6b3a9db.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075120012 6b2820db-0518-4a8f-8969-ad5b3fffb291_wgs_gdc_realn.bam 116620450320 BAM harmonized CPTAC3 36c089ae-123a-4030-a41c-ea09122b4068 5b4f4d5c9bf909d53c0cc7dae637fbec {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_6b3a9db.WXS.T C3N-01200 CCRCC WXS tumor CPT0075120012 CPT0075120012.WholeExome.RP-1303.bam 23082960311 BAM submitted_aligned CPTAC3 6d28cc3b-098e-4ff9-8652-8efa52af5a30 21b037efc9cf5b2a76d8375348239f36 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_6b3a9db.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075120012 6b2820db-0518-4a8f-8969-ad5b3fffb291_wxs_gdc_realn.bam 31335243033 BAM harmonized CPTAC3 85922135-ab55-4c2b-9a78-371f22aae54e b80ad213ff80d9644b43c1bec43ba5b9 {"aliquot_tag": "DUP_6b3a9db", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_73ab4b2.miRNA-Seq.S30_L004_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075140009 200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L004_R1_001.unaln.bam 216324191 BAM S30_L004_R1 submitted_unaligned CPTAC3 720cb1c4-b337-4511-89bb-c9ca5b1d8e4d a61803e54dabfca9182032d71612a432 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_73ab4b2.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075140009 973a1136-5bdb-408b-bb02-82c7d86add09_mirnaseq_gdc_realn.bam 238141872 BAM harmonized CPTAC3 e8708b1f-1150-42bc-9866-074dc495ec75 0aa51153497a772e628a11344488550b {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_73ab4b2.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.chimeric.gdc_realn.bam 246740493 BAM chimeric harmonized CPTAC3 898daa61-8272-4b2b-a474-092a866a2822 da62ee7ce89fef27d603e5bc7b825046 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_73ab4b2.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.genomic.gdc_realn.bam 9426360529 BAM genomic harmonized CPTAC3 9f1e41b1-f4de-416b-96af-9aa18b2a04cc fc77cc76b04f9ac5aca992904c594b79 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_73ab4b2.RNA-Seq.S3_L001_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R1_001.fastq.gz 4434094111 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 1c2bca41-bae5-42f4-9001-923894bc5448 fa9f31996a9145aa4311614172a00483 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_73ab4b2.RNA-Seq.S3_L001_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R2_001.fastq.gz 5377537098 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 af9b177e-627b-45d3-8eaf-a1a6dd68dd33 e958bf5c0139ab3372bf7ecd501dea59 {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_73ab4b2.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.transcriptome.gdc_realn.bam 12469354286 BAM transcriptome harmonized CPTAC3 be952192-9473-4939-887d-d45b1bdc5d64 d023a1c6a8b5f2467a1a57865e1a340f {"aliquot_tag": "DUP_73ab4b2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_7dfae7d2.miRNA-Seq.S20_L002_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075160009 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L002_R1_001.unaln.bam 267558533 BAM S20_L002_R1 submitted_unaligned CPTAC3 cdd2bbe0-7628-44a4-b65d-e645290c4fd3 253fcc2469290f5e54935bccae86fa0f {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_7dfae7d2.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075160009 e7441cf4-70e6-4fdf-ace4-a2c81b051a90_mirnaseq_gdc_realn.bam 297546356 BAM harmonized CPTAC3 037e2e79-6545-4654-9ce0-a9efdf76b82f 6e3ceb68b556eff4a656bbaeb2bdfe9c {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_7dfae7d2.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.chimeric.gdc_realn.bam 45401910 BAM chimeric harmonized CPTAC3 d2f68940-2a45-4336-8df5-557d8c56717b f4abd893076fc6f0b9f789419b19edd5 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_7dfae7d2.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.genomic.gdc_realn.bam 7686721279 BAM genomic harmonized CPTAC3 755236f7-ca80-4ab4-ba03-ed633741a5eb a63835052e75b8279388585cc46bd8ac {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_7dfae7d2.RNA-Seq.S25_L007_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R1_001.fastq.gz 3613492140 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 bfb3ff85-07de-41ff-8de3-7b97721ecd15 61b1bdbab74a21e1175e016647cb4d51 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_7dfae7d2.RNA-Seq.S25_L007_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R2_001.fastq.gz 4159998543 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 1f84a087-24d2-4c6c-b25e-638176a6e5b5 8409aab55102c0a282939e6795c3b090 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_7dfae7d2.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.transcriptome.gdc_realn.bam 9607739180 BAM transcriptome harmonized CPTAC3 0076192e-6b77-4f09-a110-bdf90e8626eb eb7a873f1528f02d8db64f14c2291db7 {"aliquot_tag": "DUP_7dfae7d2", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_887a4112.miRNA-Seq.S29_L005_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075120009 200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L005_R1_001.unaln.bam 342099490 BAM S29_L005_R1 submitted_unaligned CPTAC3 c4b8ea54-3e27-4a29-99b3-4f2d599b38ab 75fe50bb036000486e5fd9d231dd6d78 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_887a4112.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075120009 87dee344-57bc-4dd9-951e-86a5a3c43232_mirnaseq_gdc_realn.bam 372196853 BAM harmonized CPTAC3 3b57ad99-36a2-4b2c-9cf9-0719a26613a8 b63e5d78be94c61da05c7a3e5c0115bb {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_887a4112.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.chimeric.gdc_realn.bam 133467044 BAM chimeric harmonized CPTAC3 5a1a45f4-0f4d-44ee-a020-c90dce7ac045 789838d217852be43e5b6bdad18eab7d {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_887a4112.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.genomic.gdc_realn.bam 5969280822 BAM genomic harmonized CPTAC3 8a760026-8e70-4143-8a6a-b2987b2f740d 6ff02b6ca0020cc7dd89feba9079eb92 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_887a4112.RNA-Seq.S1_L001_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 2712382703 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 54a0b120-5335-4c89-83b8-3a48ef881d16 8ae2511cb4b9e4e6d3c248bb3c74c772 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_887a4112.RNA-Seq.S1_L001_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3355844855 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 36fe36fd-4ec7-4b4b-978f-cc9fddcd3cb1 f4493bff85d611767d33ea4608a9831f {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_887a4112.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.transcriptome.gdc_realn.bam 7951440215 BAM transcriptome harmonized CPTAC3 d95be18d-b065-425f-9012-370b11839818 8ef1e450759784aeb29a4ce06b40eab5 {"aliquot_tag": "DUP_887a4112", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_89f35c7b.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075140012 204367490066_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 348cf7cc-1f8c-43b8-b674-9765d113ecf3 5bc34987e2a3ed02dbc33dead7154dba {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_89f35c7b.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075140012 204367490066_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 6d92c5ab-c2a3-4ff8-9a22-b0d54e06cc79 11fad5dcc53fbfc08f4f145867479114 {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_89f35c7b.WGS.T C3N-01200 CCRCC WGS tumor CPT0075140012 CPT0075140012.WholeGenome.RP-2158.bam 34365370232 BAM submitted_aligned CPTAC3 f894a2ce-3f0f-4a4b-88bc-361a44d9371c c38a9beb7a1901d53121b972b635ad8e {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_89f35c7b.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075140012 f5496dd4-459d-4d29-859e-e662482d19f2_wgs_gdc_realn.bam 105362460213 BAM harmonized CPTAC3 a333449a-a812-44e5-84c7-d1602c4b3908 00187a532ab0f3e732ebc94b7e4eced8 {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_89f35c7b.WXS.T C3N-01200 CCRCC WXS tumor CPT0075140012 CPT0075140012.WholeExome.RP-1303.bam 17652148334 BAM submitted_aligned CPTAC3 85d3d62f-66c7-4401-b60d-d111390beb20 622941b082d68dcfa862bc301a307609 {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_89f35c7b.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075140012 f5496dd4-459d-4d29-859e-e662482d19f2_wxs_gdc_realn.bam 24274779721 BAM harmonized CPTAC3 48cd0261-b204-4b9a-85c2-483fa863b9fb a94fe79fa003030d16f6a0ddd9aab9fe {"aliquot_tag": "DUP_89f35c7b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_b49375cb.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075150012 204372030090_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2edef7b0-ed8e-4b67-8942-38bf97e24a9e 6d2b4f11271494813dee0ee5afa93fbc {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_b49375cb.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075150012 204372030090_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 5bbbdfec-5cf9-44fc-b4af-fa87709f55f3 5d2ed1af19018249a7f680c3894aec9f {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_b49375cb.WGS.T C3N-01200 CCRCC WGS tumor CPT0075150012 CPT0075150012.WholeGenome.RP-2158.bam 26188605598 BAM submitted_aligned CPTAC3 496f59e9-979c-466c-adcc-003d0918a482 e18a75d25cf5fbee5f1c3378080fcf83 {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_b49375cb.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075150012 f8d151d1-e92d-4cd4-b3ee-047e664ae7ba_wgs_gdc_realn.bam 78038774891 BAM harmonized CPTAC3 169271e8-b862-4c43-af60-3fe0a2fc8034 d85d78130ae5b7a900af5f3c09814536 {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_b49375cb.WXS.T C3N-01200 CCRCC WXS tumor CPT0075150012 CPT0075150012.WholeExome.RP-1303.bam 17384489169 BAM submitted_aligned CPTAC3 64b4c77e-805a-4c3a-8334-b4d6419b0bfa 2e9dad3cd3c567af041fd387b9c6e50a {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_b49375cb.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075150012 f8d151d1-e92d-4cd4-b3ee-047e664ae7ba_wxs_gdc_realn.bam 23925069381 BAM harmonized CPTAC3 27b7e1b6-9d5d-4868-9c7b-d31d47a70ccc 0c0549bba735588494d1884e32489c9f {"aliquot_tag": "DUP_b49375cb", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_f3330f1b.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075160012 204372030023_R04C01_Grn.idat 13677895 IDAT Green NA CPTAC3 45deb597-b3eb-4918-81ee-e386fb0e93e9 24a0c1e10008a3a1b659507de3022f9c {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_f3330f1b.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075160012 204372030023_R04C01_Red.idat 13677895 IDAT Red NA CPTAC3 2221cb59-81d0-43bd-a9d2-14b59ac7da55 ee442d78851ca205296ce7ec9b641274 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_f3330f1b.WGS.T C3N-01200 CCRCC WGS tumor CPT0075160012 CPT0075160012.WholeGenome.RP-2158.bam 32202097523 BAM submitted_aligned CPTAC3 04c42b65-5090-4ce2-8f7e-412fd9d33147 b57d16d69222d9affa02929bfb9204d3 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_f3330f1b.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075160012 b7a42d2c-dcf9-4a38-b408-c0ed23354171_wgs_gdc_realn.bam 96507509265 BAM harmonized CPTAC3 349d8502-6f99-41da-8e96-833a0f288bdf fbf120d0e55925a1db4bc2b762ca1151 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_f3330f1b.WXS.T C3N-01200 CCRCC WXS tumor CPT0075160012 CPT0075160012.WholeExome.RP-1303.bam 21644696504 BAM submitted_aligned CPTAC3 f563bce9-fe03-417f-9634-f1aa95057fa3 d50528e4c919bffd7b756beb1dd429a1 {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.DUP_f3330f1b.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075160012 b7a42d2c-dcf9-4a38-b408-c0ed23354171_wxs_gdc_realn.bam 30016140574 BAM harmonized CPTAC3 2f5e8d9c-7408-45c6-a5cd-0867db5449f2 0b3e4b6c10453c1e4a0a9d9c77f9744c {"aliquot_tag": "DUP_f3330f1b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.MethArray.Green.A C3N-01200 CCRCC Methylation_Array tissue_normal CPT0075170009 203027380024_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 13f31e09-fb0c-4826-98b0-35e9ac240679 a4532e636b295ff7479a800be4fab853 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation_Array tumor CPT0075130009 202184990059_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3ceb6106-0d95-40e2-8993-b545fc0ea3ef cc153bcdbbc599278d49da61362a91a4 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.MethArray.Red.A C3N-01200 CCRCC Methylation_Array tissue_normal CPT0075170009 203027380024_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 f7f0cb36-33c7-4b3e-8413-d1bd55f6dd9a 99a0843b458a7897630d1e7fcd90a5c2 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.MethArray.Red.T C3N-01200 CCRCC Methylation_Array tumor CPT0075130009 202184990059_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 80fe3577-8568-4647-9436-2e003699def0 1f6af9bae745b1370c9554f62572ce37 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.miRNA-Seq.A.hg38 C3N-01200 CCRCC miRNA-Seq tissue_normal CPT0075170006 2d6d11b2-7718-435d-a2a2-9f0cf3f8ab9b_mirnaseq_gdc_realn.bam 223988242 BAM harmonized CPTAC3 760434c3-3830-4e14-b830-711d789bd058 6a0f61f4f35d447f85699df1256d6f00 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.miRNA-Seq.S15_L003_R1.A C3N-01200 CCRCC miRNA-Seq tissue_normal CPT0075170006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L003_R1_001.unaln.bam 199182812 BAM S15_L003_R1 submitted_unaligned CPTAC3 2b9b314d-440b-41cd-8aca-2d67b15669e6 d9200af50be8caf046562c1e87932123 {"aliquot_tag": "ALQ_d025d3f3", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.miRNA-Seq.S45_L002_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075130006 181113_UNC31-K00269_0164_AH23NNBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 185603439 BAM S45_L002_R1 submitted_unaligned CPTAC3 7a633b33-7a00-43e0-898d-ae3a2dc9f54f 64a0b7a070a7845f7f2cc968876dde35 {"aliquot_tag": "ALQ_25a57533", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075130006 4a756680-4bd4-4b4e-a369-b9f0750a5f08_mirnaseq_gdc_realn.bam 210171625 BAM harmonized CPTAC3 57983b38-a179-4161-9301-054a8d52af85 f02c3595d130bd4491b792c124d5c80a {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.RNA-Seq.chimeric.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.chimeric.gdc_realn.bam 45817811 BAM chimeric harmonized CPTAC3 ac2d3db1-e8a2-4898-82ff-3e002ab71eda 284c66411735122f11bd065d91c420d3 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.chimeric.gdc_realn.bam 183246864 BAM chimeric harmonized CPTAC3 b3d89d00-9544-459c-ba09-9da6b85ea580 73adce848ce3bb6e64ab8a2b15c535fb {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.RNA-Seq.genomic.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.genomic.gdc_realn.bam 7778328329 BAM genomic harmonized CPTAC3 e44bb064-c226-45df-81b6-e9f54e8295c4 3e3be7d8df09741bec1456f83afd92d2 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.genomic.gdc_realn.bam 7598400010 BAM genomic harmonized CPTAC3 be7604a6-a252-411a-954d-83cb6ff1ff9f c494a029b4e083a510f066bc198fdeb2 {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.RNA-Seq.S11_L003_R1.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R1_001.fastq.gz 3995140615 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 3622b01d-1aed-4d4c-bf81-6f3d3208683f 8c671044dd44df6775bd3c5f6f6c4ddd {"aliquot_tag": "ALQ_d025d3f3", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.RNA-Seq.S11_L003_R2.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R2_001.fastq.gz 4271303352 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 8fe43892-e94a-4789-be90-c32591c4a108 b28a1bb504bb81ff6a57b4f7aedcc1a6 {"aliquot_tag": "ALQ_d025d3f3", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.RNA-Seq.S24_L007_R1.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R1_001.fastq.gz 3917366988 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 fb2e9eb7-49a1-4810-ad31-58b4411cdd05 2db6ad01747f10e1687299bbffc72669 {"aliquot_tag": "ALQ_25a57533", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.RNA-Seq.S24_L007_R2.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R2_001.fastq.gz 4168322645 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 def5db7e-16df-4a5f-8d32-ad1dac6b90f2 489ae6a1d73ba66e25f9ea4e0a43b23d {"aliquot_tag": "ALQ_25a57533", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.RNA-Seq.transcriptome.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.transcriptome.gdc_realn.bam 9731230653 BAM transcriptome harmonized CPTAC3 d377d7cb-f860-4a63-8bcc-a1e717cc95b2 b40867af8ea407b70e6a9c55b411ec82 {"aliquot_tag": "ALQ_d025d3f3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.transcriptome.gdc_realn.bam 10953737304 BAM transcriptome harmonized CPTAC3 1624fc56-ae22-4979-a882-a5fde95db2c0 b5b8034b647f5184becc552d3ed66578 {"aliquot_tag": "ALQ_25a57533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.WGS.A C3N-01200 CCRCC WGS tissue_normal CPT0075170009 CPT0075170009.WholeGenome.RP-1303.bam 53781174676 BAM submitted_aligned CPTAC3 9967b80d-f8d4-4cb0-9e6a-6ce7227b5e18 0e426c27ad566218ab01b9f91f2a3137 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.WGS.A.hg38 C3N-01200 CCRCC WGS tissue_normal CPT0075170009 6197fa8a-3d40-4e44-a89c-afcc3ad4d564_wgs_gdc_realn.bam 78460551401 BAM harmonized CPTAC3 b982ca99-b3d8-4021-8dd3-3a727eae6f22 e7ba12ed6ef08916a093d8e826acce06 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.WGS.N C3N-01200 CCRCC WGS blood_normal CPT0075240001 CPT0075240001.WholeGenome.RP-1303.bam 69253046912 BAM submitted_aligned CPTAC3 7dfca637-963d-4c96-902e-f64beeb6bed3 0eccb4b4392aac4e12660bdbcda49f51 {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01200.WGS.N.hg38 C3N-01200 CCRCC WGS blood_normal CPT0075240001 985b6a8c-9bee-4c84-beb6-289937143d49_gdc_realn.bam 102398962395 BAM harmonized CPTAC3 f09fc36d-1f58-4903-8bcb-6476a64477ce 14e4163f764cd1cd1d27df280c7f4bac {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01200.WGS.T C3N-01200 CCRCC WGS tumor CPT0075130009 CPT0075130009.WholeGenome.RP-1303.bam 79011289140 BAM submitted_aligned CPTAC3 70d11e82-1f94-4713-a5bd-04199336324d b8b265b3ea63e195bd84260c49b88808 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.WGS.T.hg38 C3N-01200 CCRCC WGS tumor CPT0075130009 0d15156f-e4c5-45a2-8904-33c991c2fd17_gdc_realn.bam 116900395009 BAM harmonized CPTAC3 4f30ea56-2e99-47e0-85ae-c13cd5bdbcea 63b90353ab06239a77fa0ab5561075fc {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.WXS.A C3N-01200 CCRCC WXS tissue_normal CPT0075170009 CPT0075170009.WholeExome.RP-1303.bam 33367667430 BAM submitted_aligned CPTAC3 748d5256-4426-4cd2-bff2-1db7bbc0432e 9f947e47d8df209d6496921e0afd7ba2 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.WXS.A.hg38 C3N-01200 CCRCC WXS tissue_normal CPT0075170009 6197fa8a-3d40-4e44-a89c-afcc3ad4d564_wxs_gdc_realn.bam 44911088732 BAM harmonized CPTAC3 458e55be-e2d1-4164-b7d2-4ea808be7d57 71e375365d6e9c02fc92baef0faf7325 {"aliquot_tag": "ALQ_409ace62", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01200.WXS.N C3N-01200 CCRCC WXS blood_normal CPT0075240001 CPT0075240001.WholeExome.RP-1303.bam 31160390089 BAM submitted_aligned CPTAC3 11a7c5f1-b580-411c-9318-f63d567110b7 9f0f2d6771f6b40f6c8c8964c230e3d3 {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01200.WXS.N.hg38 C3N-01200 CCRCC WXS blood_normal CPT0075240001 985b6a8c-9bee-4c84-beb6-289937143d49_gdc_realn.bam 42998051781 BAM harmonized CPTAC3 5ed7729f-924d-4be2-ac4d-9b8722e10eb9 083cd6e59c0460f28dd48fdcb5ff9c55 {"aliquot_tag": "ALQ_8f754e2e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01200.WXS.T C3N-01200 CCRCC WXS tumor CPT0075130009 CPT0075130009.WholeExome.RP-1303.bam 26200407707 BAM submitted_aligned CPTAC3 9534c18d-4932-4e28-a4c8-208dec038af6 73a424efcb860c6e669b64c20caccd71 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01200.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075130009 0d15156f-e4c5-45a2-8904-33c991c2fd17_gdc_realn.bam 36200071299 BAM harmonized CPTAC3 7ede714a-8cfc-4b71-a2d2-1e78c68ce6cf e908c064d993b2a58ab73c7cad939f98 {"aliquot_tag": "ALQ_b51a68a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.MethArray.Green.T C3N-01211 UCEC Methylation_Array tumor CPT0075900009 202176290046_R08C01_Grn.idat 13676215 IDAT Green NA CPTAC3 07d13ad1-12a3-4cc8-974e-a8b0e47f5cd7 aa58e582889db6aeed9da59c19d6d9a8 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.MethArray.Red.T C3N-01211 UCEC Methylation_Array tumor CPT0075900009 202176290046_R08C01_Red.idat 13676215 IDAT Red NA CPTAC3 cc27c8da-ccc7-48db-ac0a-05811406b761 4e16b278ab5abbfe81541f18fd929aed {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.miRNA-Seq.S41_L005_R1.T C3N-01211 UCEC miRNA-Seq tumor CPT0075900006 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L005_R1_001.unaln.bam 167252257 BAM S41_L005_R1 submitted_unaligned CPTAC3 366b9a85-25c7-44f9-bb90-a449939af4cf 9c3f17d245bbb392a394810277148b6f {"aliquot_tag": "ALQ_8e568d8e", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.miRNA-Seq.T.hg38 C3N-01211 UCEC miRNA-Seq tumor CPT0075900006 b9641008-9c73-4e88-9ad6-408686c23501_mirnaseq_gdc_realn.bam 183880492 BAM harmonized CPTAC3 80556270-a9ef-4b05-a115-538826983613 7514a9dbd94a57ba547f5b3354b185f7 {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.chimeric.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.chimeric.gdc_realn.bam 84200959 BAM chimeric harmonized CPTAC3 5d2519b2-43d1-42e4-8c21-87030f077fe1 1e4e442b857b0f68bc525d8403f3d57f {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.chimeric.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.chimeric.gdc_realn.bam 233469227 BAM chimeric harmonized CPTAC3 4bdfbc75-2949-4f4e-999d-b072582d8c28 999f7ea0645c9d1e307e6394d838a49d {"aliquot_tag": "ALQ_9f72ed8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.genomic.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.genomic.gdc_realn.bam 8147565319 BAM genomic harmonized CPTAC3 bfab949d-c34a-43c4-958e-d0f8f1ea9363 e81114b49fc4a03a4621013f726c9e7b {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.genomic.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.genomic.gdc_realn.bam 13141106631 BAM genomic harmonized CPTAC3 9a084d84-99d8-4530-95ca-955c3f40fd9f b2d48667fee45057bbd1ce9c8d6d9449 {"aliquot_tag": "ALQ_9f72ed8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.S87_R1.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R1_001.fastq.gz 8339586889 FASTQ S87_R1 submitted_unaligned CPTAC3 df324cba-88cc-4f37-ad5f-f6ff1e73f953 e2d1c9634b40acc0836d99e9da80e66b {"aliquot_tag": "ALQ_9f72ed8d", "sample": "S87", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.S87_R2.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R2_001.fastq.gz 8608755124 FASTQ S87_R2 submitted_unaligned CPTAC3 e61827ed-8251-4e1a-b9e5-9563d3230230 8b33dece1d610d3879f010d3b18a99db {"aliquot_tag": "ALQ_9f72ed8d", "sample": "S87", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.S8_L008_R1.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R1_001.fastq.gz 4274317593 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 420d5f06-1231-4f16-b090-9e27da0b3c83 9e86ceee3a441dd91286c74cb7c0a3e9 {"aliquot_tag": "ALQ_8e568d8e", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.S8_L008_R2.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R2_001.fastq.gz 4562443542 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 cc46aefa-d070-4531-b35b-69fef48f8fd4 6e7453240a7fc5690fa0abd65b52ae08 {"aliquot_tag": "ALQ_8e568d8e", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.transcriptome.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.transcriptome.gdc_realn.bam 12230418460 BAM transcriptome harmonized CPTAC3 8cd4adc9-3231-4f67-8768-0cca6c1122d9 e0b6337153cd1811780fcf6698f77097 {"aliquot_tag": "ALQ_8e568d8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.RNA-Seq.transcriptome.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.transcriptome.gdc_realn.bam 9690492748 BAM transcriptome harmonized CPTAC3 d4786834-40e7-4236-a3a2-92925771881f c6cc6764cd649f5d9669ac0437eb3b76 {"aliquot_tag": "ALQ_9f72ed8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.WGS.N C3N-01211 UCEC WGS blood_normal CPT0076020002 CPT0076020002.WholeGenome.RP-1303.bam 70337765007 BAM submitted_aligned CPTAC3 785cea37-b675-46d4-a365-2d89abec88ed 580dfaa4cb03fea28a6a5db16436a440 {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01211.WGS.N.hg38 C3N-01211 UCEC WGS blood_normal CPT0076020002 a5ae9005-f7c0-4291-b288-df8380b29a04_gdc_realn.bam 104504545486 BAM harmonized CPTAC3 9c47ab95-7b62-4528-a9e5-b73bfe99dab3 08b8855c0dcbb7e658538eadbdcaa10e {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01211.WGS.T C3N-01211 UCEC WGS tumor CPT0075900009 CPT0075900009.WholeGenome.RP-1303.bam 56552709015 BAM submitted_aligned CPTAC3 1776eceb-fe90-4426-b9f4-1b392ac4c2fd c72b6b378ab7daaf3ef753c595402467 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.WGS.T.hg38 C3N-01211 UCEC WGS tumor CPT0075900009 d29c7529-d7da-4ee6-b7c3-6af5083003af_gdc_realn.bam 83377139765 BAM harmonized CPTAC3 eb1be1de-2a5d-4ae4-a9bf-e62c34765a69 60c1396bee4b590d024ec30d2af71e31 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.WXS.N C3N-01211 UCEC WXS blood_normal CPT0076020002 CPT0076020002.WholeExome.RP-1303.bam 26808726014 BAM submitted_aligned CPTAC3 bcea7d60-f004-48de-b990-f621f504d140 9a4d53d5f9fc4de286397f0576216b73 {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01211.WXS.N.hg38 C3N-01211 UCEC WXS blood_normal CPT0076020002 a5ae9005-f7c0-4291-b288-df8380b29a04_gdc_realn.bam 36601792011 BAM harmonized CPTAC3 f275ea09-8877-4159-bdee-d8781d22e740 053e61867b0554dd7e6e4fbe1a19b2cf {"aliquot_tag": "ALQ_e51c51a2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01211.WXS.T C3N-01211 UCEC WXS tumor CPT0075900009 CPT0075900009.WholeExome.RP-1303.bam 34143045947 BAM submitted_aligned CPTAC3 328fa8fc-696f-4d47-828f-7cf2cd34df9e f53be1b3e89204e6542be300e937b133 {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01211.WXS.T.hg38 C3N-01211 UCEC WXS tumor CPT0075900009 d29c7529-d7da-4ee6-b7c3-6af5083003af_gdc_realn.bam 46717493322 BAM harmonized CPTAC3 37591282-8e97-4e53-82b4-13eca58214b8 6e86e47b1d4a8ebeaade6ebd40890b5a {"aliquot_tag": "ALQ_1ee9901f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.ANN_8f02f8b8.MethArray.Green.T C3N-01212 UCEC Methylation_Array tumor CPT0075380009 202176300111_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a715d355-a961-43a2-b008-9c2bc0cd45a3 076102fb4e1161ced0bbe09d9883df22 {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.ANN_8f02f8b8.MethArray.Red.T C3N-01212 UCEC Methylation_Array tumor CPT0075380009 202176300111_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 fe8404a4-6e0c-4506-8f7a-ba7e8df7494e 824438b87cb96dfdc440f8590c3540ab {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.ANN_8f02f8b8.WGS.T C3N-01212 UCEC WGS tumor CPT0075380009 CPT0075380009.WholeGenome.RP-1303.bam 69308469108 BAM submitted_aligned CPTAC3 6dd3d8c6-5562-4319-8c95-1c73871961e8 dd8d6e81a28d2902e80709b4e82e62ac {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.ANN_8f02f8b8.WGS.T.hg38 C3N-01212 UCEC WGS tumor CPT0075380009 26e50c35-a756-496a-a377-639add0619ee_gdc_realn.bam 103288384141 BAM harmonized CPTAC3 aaddc8fa-2b31-41ff-8cbe-468c88441734 235b55651eab869a64c0cfaf70332c77 {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.ANN_8f02f8b8.WXS.T C3N-01212 UCEC WXS tumor CPT0075380009 CPT0075380009.WholeExome.RP-1303.bam 27612818064 BAM submitted_aligned CPTAC3 b9c5038e-63ba-4d53-8634-720518abd60b e2c619f3f1dc43ec7d87aa9b65f9c753 {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.ANN_8f02f8b8.WXS.T.hg38 C3N-01212 UCEC WXS tumor CPT0075380009 26e50c35-a756-496a-a377-639add0619ee_gdc_realn.bam 38297079719 BAM harmonized CPTAC3 9f929c14-586e-40d7-842c-7fcd83434081 e9cd1f247877cb213c804e2a34d4650c {"aliquot_tag": "ANN_8f02f8b8", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.ANN_c025fc89.WGS.N C3N-01212 UCEC WGS blood_normal CPT0075440002 CPT0075440002.WholeGenome.RP-1303.bam 65852195825 BAM submitted_aligned CPTAC3 f94f0c39-afc8-44c9-b319-3b81d96c3100 0cb251d3fba8d7fed71d9b20c31ac67a {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01212.ANN_c025fc89.WGS.N.hg38 C3N-01212 UCEC WGS blood_normal CPT0075440002 de27373b-d06d-4246-bfbd-1fb88cc0f8fd_gdc_realn.bam 98497925335 BAM harmonized CPTAC3 4bc8e960-760d-4cf1-b6b3-b52374645e4f b951f08d59b9aba9c90b64590d030344 {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01212.ANN_c025fc89.WXS.N C3N-01212 UCEC WXS blood_normal CPT0075440002 CPT0075440002.WholeExome.RP-1303.bam 35903328030 BAM submitted_aligned CPTAC3 64fc0220-163a-4cfe-b176-8a23a2bd8880 702c181994420b5f211c93ca76800a06 {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01212.ANN_c025fc89.WXS.N.hg38 C3N-01212 UCEC WXS blood_normal CPT0075440002 de27373b-d06d-4246-bfbd-1fb88cc0f8fd_gdc_realn.bam 48337338396 BAM harmonized CPTAC3 09d74eea-1860-4270-85dc-ce5bebbf6577 36eede3c7048b55b0859d19e84740e68 {"aliquot_tag": "ANN_c025fc89", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01212.miRNA-Seq.S36_L007_R1.T C3N-01212 UCEC miRNA-Seq tumor CPT0075380006 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L007_R1_001.unaln.bam 203254036 BAM S36_L007_R1 submitted_unaligned CPTAC3 78e018e7-01e5-451c-a99a-625b7c4aacbc d157102136863e1a2db5991724861c5b {"aliquot_tag": "ALQ_1fbde529", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.miRNA-Seq.T.hg38 C3N-01212 UCEC miRNA-Seq tumor CPT0075380006 cf9259fc-ea3c-459c-a78a-057177b629a3_mirnaseq_gdc_realn.bam 228094544 BAM harmonized CPTAC3 6fecbc3b-f9f5-498d-996d-a79400ad92b8 88eff3c5cfda2dc16cc4bca12750582f {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.chimeric.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.chimeric.gdc_realn.bam 437341720 BAM chimeric harmonized CPTAC3 58287dc5-4ad5-4397-8711-ac5346c816fd d663a9cd4b0d1a6b751060a03eba3855 {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.chimeric.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.chimeric.gdc_realn.bam 278954346 BAM chimeric harmonized CPTAC3 020b2707-0b7e-4a27-a758-15b8a49807d3 7371d24017e18938be1e48bb5dd1469d {"aliquot_tag": "ALQ_d66c5893", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.genomic.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.genomic.gdc_realn.bam 8518631995 BAM genomic harmonized CPTAC3 c741e030-c63f-4e05-ac8f-d5a14dc9ce3a b92d4d78c193322471f6f255a5dbd9a7 {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.genomic.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.genomic.gdc_realn.bam 14761576322 BAM genomic harmonized CPTAC3 4e4a4770-db12-43b7-9f0a-3705dc962164 4f89ddc193d515c52a5c4d5f37f1a22c {"aliquot_tag": "ALQ_d66c5893", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.S47_R1.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R1_001.fastq.gz 9187105552 FASTQ S47_R1 submitted_unaligned CPTAC3 afd732e5-edb1-4d55-8a0e-ae7ad9be868b ab76b217c77c6dd17d1f3268e0402e8a {"aliquot_tag": "ALQ_d66c5893", "sample": "S47", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.S47_R2.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R2_001.fastq.gz 9636009516 FASTQ S47_R2 submitted_unaligned CPTAC3 a24c88f8-e3d9-48c7-8db8-bca6d591bade edc6079edf83dc0c2bf851b42ca06060 {"aliquot_tag": "ALQ_d66c5893", "sample": "S47", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.S5_L008_R1.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R1_001.fastq.gz 4185056852 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 77cb79fc-c379-49ee-a61a-861b047a8d63 c813117f6af232a9c6072c44a60b7f5b {"aliquot_tag": "ALQ_1fbde529", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.S5_L008_R2.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R2_001.fastq.gz 4542196085 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 70834e25-c655-4715-a7f8-57741576d457 ce47c2da72922be2558c3478339c4f08 {"aliquot_tag": "ALQ_1fbde529", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.transcriptome.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.transcriptome.gdc_realn.bam 12181868455 BAM transcriptome harmonized CPTAC3 e7abcf1f-b30f-4010-a76e-cfabfdee5afe e7dd707c19cb4295a8026ffa2ffe5261 {"aliquot_tag": "ALQ_1fbde529", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01212.RNA-Seq.transcriptome.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.transcriptome.gdc_realn.bam 9819944242 BAM transcriptome harmonized CPTAC3 64f15f47-cc41-49cc-abf3-1f79bedabc2b 197d8a08786fb5a84369aae3bb44e702 {"aliquot_tag": "ALQ_d66c5893", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.MethArray.Green.T C3N-01213 CCRCC Methylation_Array tumor CPT0075720009 202178770111_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c2235d2d-3d39-4258-a055-5fd34bcc937c 3236dcf3a5eb65554e6ef290a1203103 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.MethArray.Red.T C3N-01213 CCRCC Methylation_Array tumor CPT0075720009 202178770111_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 2c4e9380-0a45-4dc6-bee6-7268cffa5f12 3ed183816d553fdd668e3311542d1ff5 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.miRNA-Seq.S37_L007_R1.T C3N-01213 CCRCC miRNA-Seq tumor CPT0075720006 181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L007_R1_001.unaln.bam 251502869 BAM S37_L007_R1 submitted_unaligned CPTAC3 a965c462-1a8e-47a5-974b-c369f5d555b3 6e99e065652062a736c6c8b2eff9a990 {"aliquot_tag": "ALQ_ce9cbf9e", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.miRNA-Seq.T.hg38 C3N-01213 CCRCC miRNA-Seq tumor CPT0075720006 b8253e74-2592-462e-9e21-5937cc65e798_mirnaseq_gdc_realn.bam 279708359 BAM harmonized CPTAC3 df607b18-689a-4624-9011-00495ed5dd79 cacb2548f8aead72badcd111199c0daa {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.RNA-Seq.chimeric.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.chimeric.gdc_realn.bam 67007115 BAM chimeric harmonized CPTAC3 4b9ca860-943c-45f8-a363-29db469ffcde 6c75a5399c82eaaed18bd08169d8b622 {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.RNA-Seq.genomic.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.genomic.gdc_realn.bam 7506941801 BAM genomic harmonized CPTAC3 d13ec729-6132-407b-924d-2ff0f68fe1ac 5cc3be7fbb0264aa9e9ba307946497d5 {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.RNA-Seq.S6_L008_R1.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R1_001.fastq.gz 3625868213 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 605fbbb8-d32e-4b79-affe-28179485475b 59abd3e96c944d55da98901cf6989806 {"aliquot_tag": "ALQ_ce9cbf9e", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.RNA-Seq.S6_L008_R2.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R2_001.fastq.gz 3780022459 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 cc5b3a0c-4ad0-4ec2-abb5-3a6de4cc6e97 c4e14df7ca5f5d3d5477b6c8071092c6 {"aliquot_tag": "ALQ_ce9cbf9e", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.RNA-Seq.transcriptome.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.transcriptome.gdc_realn.bam 9183361922 BAM transcriptome harmonized CPTAC3 c591d97a-07cf-47d6-ae40-1461e0c372c2 75a809f2b9eeb82ffa08ae6cddca4620 {"aliquot_tag": "ALQ_ce9cbf9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.WGS.N C3N-01213 CCRCC WGS blood_normal CPT0075800002 CPT0075800002.WholeGenome.RP-1303.bam 59012031674 BAM submitted_aligned CPTAC3 4ec096d0-fb1b-4835-8a1c-3199720a791d 8a38b5bd8f8cead98608ff47ac8142c8 {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01213.WGS.N.hg38 C3N-01213 CCRCC WGS blood_normal CPT0075800002 fc169817-4564-405b-a1b0-f21511c2d8c8_gdc_realn.bam 88247466707 BAM harmonized CPTAC3 0a61d30d-48e3-419c-8049-4487b3ecc830 d68a52b4f815e012cfcabfbdc163876f {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01213.WGS.T C3N-01213 CCRCC WGS tumor CPT0075720009 CPT0075720009.WholeGenome.RP-1303.bam 58037607466 BAM submitted_aligned CPTAC3 6c7d563e-a61a-4de1-afbd-dad1e0222a47 6bec191548863a5b6421db7320af015e {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.WGS.T.hg38 C3N-01213 CCRCC WGS tumor CPT0075720009 3adc61ac-213f-4512-967d-308832c5145d_gdc_realn.bam 86652764486 BAM harmonized CPTAC3 f68585fa-5b00-44e3-9025-ff36eff59590 7b94845e61bc329c713f53776c8561fd {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.WXS.N C3N-01213 CCRCC WXS blood_normal CPT0075800002 CPT0075800002.WholeExome.RP-1303.bam 28347069100 BAM submitted_aligned CPTAC3 a2649126-2370-40cf-816e-3de73b567a56 3ba049a88aa88ba7521a87366c1e4faa {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01213.WXS.N.hg38 C3N-01213 CCRCC WXS blood_normal CPT0075800002 fc169817-4564-405b-a1b0-f21511c2d8c8_gdc_realn.bam 38078650308 BAM harmonized CPTAC3 aeef0533-1970-4818-89c6-fc1d3dfc884e be81cc362706c104f1239a7dcb779974 {"aliquot_tag": "ALQ_42679a32", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01213.WXS.T C3N-01213 CCRCC WXS tumor CPT0075720009 CPT0075720009.WholeExome.RP-1303.bam 36555012007 BAM submitted_aligned CPTAC3 7d8ee55b-371d-4a2e-a27b-6cb476ec236e 5b54f4db462c583b0f931aeb15fedd65 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01213.WXS.T.hg38 C3N-01213 CCRCC WXS tumor CPT0075720009 3adc61ac-213f-4512-967d-308832c5145d_gdc_realn.bam 50398120362 BAM harmonized CPTAC3 381a5802-b62b-44fe-bce1-177c69f293fe 51855b35770d3263896259b0c18a1da6 {"aliquot_tag": "ALQ_5e23a20f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_150fda74.miRNA-Seq.S21_L002_R1.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075540016 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L002_R1_001.unaln.bam 284557553 BAM S21_L002_R1 submitted_unaligned CPTAC3 67bc7004-b4f9-4db3-b650-051bee2ea139 9d0f34517587dc826275db1d06b56d51 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_150fda74.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075540016 94ba8a1a-7c34-4f6f-afdc-d7a439375533_mirnaseq_gdc_realn.bam 307401928 BAM harmonized CPTAC3 b6adf665-858f-4c52-ba74-8df7c307a417 7a2250a0d41f2274df796eb84439aa23 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_150fda74.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.chimeric.gdc_realn.bam 30339994 BAM chimeric harmonized CPTAC3 636a56a0-2a42-410a-be88-0e55fb10b315 52840b5cff88d89ec8f9b5adcf18af91 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_150fda74.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.genomic.gdc_realn.bam 7258412959 BAM genomic harmonized CPTAC3 fadb0dbe-05ae-4eae-b7c3-1602cdaad104 7392ab99a698892ae61a1ab98b76934f {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_150fda74.RNA-Seq.S22_L006_R1.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R1_001.fastq.gz 3396025531 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 29c903b5-dfa7-4a7a-b93f-496886871939 4d0c22aed508fb8faa0c895dcd37279b {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_150fda74.RNA-Seq.S22_L006_R2.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R2_001.fastq.gz 3838234476 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 35d9563c-26b2-4e51-b02a-8632bab707df 970db3ec391bfde1c45f5b38cf5d9866 {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_150fda74.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.transcriptome.gdc_realn.bam 9994353333 BAM transcriptome harmonized CPTAC3 4ab46630-895c-49c2-a8b3-9124d70de5ba 6ab12870348df35767216f797fdf567c {"aliquot_tag": "DUP_150fda74", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_2f0237dd.MethArray.Green.T C3N-01214 CCRCC Methylation_Array tumor CPT0075550012 204367400148_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fdfb61c4-8b69-45dc-86e5-434cbd9e17b5 2064aaca384d999dfc83d364c02ee5c2 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_2f0237dd.MethArray.Red.T C3N-01214 CCRCC Methylation_Array tumor CPT0075550012 204367400148_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 7698c430-0194-422f-a7c7-6001224bb939 6eb33908d8c1cc6c52b0c3123dcbf076 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_2f0237dd.WGS.T C3N-01214 CCRCC WGS tumor CPT0075550012 CPT0075550012.WholeGenome.RP-2158.bam 30428838219 BAM submitted_aligned CPTAC3 dd8c8282-767b-4e55-81d5-bc0bbab5b0bf bf3326e3b6950ab9bbfe9734b7ffca24 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_2f0237dd.WGS.T.hg38 C3N-01214 CCRCC WGS tumor CPT0075550012 a558ec6d-c1bb-4c9f-ba16-9522c7292919_wgs_gdc_realn.bam 90627742417 BAM harmonized CPTAC3 edb61d5a-0e89-4da6-a2e9-0bb8687b6b9b ea1f133c8e70e96584db7140040c7a86 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_2f0237dd.WXS.T C3N-01214 CCRCC WXS tumor CPT0075550012 CPT0075550012.WholeExome.RP-1303.bam 21271076261 BAM submitted_aligned CPTAC3 565982d7-fe6f-438f-840d-3802f993bad6 20557f6215cc2a932d480769422e68b2 {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_2f0237dd.WXS.T.hg38 C3N-01214 CCRCC WXS tumor CPT0075550012 a558ec6d-c1bb-4c9f-ba16-9522c7292919_wxs_gdc_realn.bam 29395664104 BAM harmonized CPTAC3 12f326a0-673a-4e5f-9649-464d48195507 65d88cb554a50b12b6e2266265e4b6fe {"aliquot_tag": "DUP_2f0237dd", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_a87d933f.miRNA-Seq.S19_L002_R1.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075550005 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L002_R1_001.unaln.bam 249654007 BAM S19_L002_R1 submitted_unaligned CPTAC3 690d0423-5d37-4f9f-98da-78579cb2bcd5 2537a79f6106e2edb52ca6127c0e4f01 {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S19", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_a87d933f.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075550005 c294705a-234f-4937-ad7a-8321bb424370_mirnaseq_gdc_realn.bam 282699691 BAM harmonized CPTAC3 db4c4e68-c447-4761-985b-31a276d2bbe9 e158f35fecd7149314db202e02beb8fe {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_a87d933f.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.chimeric.gdc_realn.bam 36408352 BAM chimeric harmonized CPTAC3 8df147a4-dafc-400b-88ec-212a16f163e7 46acb755ddad717ba642b49c88e9d76e {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_a87d933f.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.genomic.gdc_realn.bam 8719844840 BAM genomic harmonized CPTAC3 e0fe29b8-796c-4b71-835c-6b0acb1cd12b c9c9af2066a63a01e07ef9652c098a7d {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_a87d933f.RNA-Seq.S24_L006_R1.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R1_001.fastq.gz 4076990725 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 a54ec209-3dee-4648-8faf-0e4c910e63d4 260813837d210e7fc3ea253d76843a7e {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_a87d933f.RNA-Seq.S24_L006_R2.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R2_001.fastq.gz 4730544227 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 97999ddd-c398-400d-abf8-28fc172880d8 bb7d641bd93711db1b2894e3bbcda58d {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.DUP_a87d933f.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.transcriptome.gdc_realn.bam 11983536796 BAM transcriptome harmonized CPTAC3 f094d44a-9854-4b99-b353-1ac54d15e901 11d8c4edb80fc2d82163afe5c8e8c1ca {"aliquot_tag": "DUP_a87d933f", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.MethArray.Green.A C3N-01214 CCRCC Methylation_Array tissue_normal CPT0075570009 204930630107_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 ac735eb3-844a-4c84-a88d-67e0c30aca17 68cd02b41780c4890ddfbda909e2594a {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.MethArray.Green.T C3N-01214 CCRCC Methylation_Array tumor CPT0075560006 202176290116_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b3985b9b-5848-4086-b34c-7b106644fa91 d9574e03c1433149f5c7cc55554002b8 {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.MethArray.Red.A C3N-01214 CCRCC Methylation_Array tissue_normal CPT0075570009 204930630107_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 70a5b697-0157-4736-8fa1-b5bc3427ce23 d4d40fbc28b91636afe203c5e991e2f9 {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.MethArray.Red.T C3N-01214 CCRCC Methylation_Array tumor CPT0075560006 202176290116_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 772d978c-ba58-4439-88b5-4b9a5d9260e0 e44cead620d5cac88b0ce2ad24076607 {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.miRNA-Seq.A.hg38 C3N-01214 CCRCC miRNA-Seq tissue_normal CPT0075570006 8220b089-90b2-4d27-841a-f7b5c5fb6c47_mirnaseq_gdc_realn.bam 199575641 BAM harmonized CPTAC3 0460d35d-e5aa-4a23-aeff-fc5e0e15fb2b 888df6798770efe1b8de3f8ee31999a6 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.miRNA-Seq.S16_L003_R1.A C3N-01214 CCRCC miRNA-Seq tissue_normal CPT0075570006 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L003_R1_001.unaln.bam 178579515 BAM S16_L003_R1 submitted_unaligned CPTAC3 a692a10f-6e9a-4c1a-a5a9-0257c9d78ba5 e8a76a9fab5cfad0822f7c19ebcba99e {"aliquot_tag": "ALQ_4bb491e5", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.miRNA-Seq.S4_L006_R1.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075560009 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L006_R1_001.unaln.bam 225107791 BAM S4_L006_R1 submitted_unaligned CPTAC3 15352afb-c843-4d81-b825-61d7dee999b3 507b41777bbb9facfc6b254fe46f7fd0 {"aliquot_tag": "ALQ_e66ba5c4", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075560009 056f614f-96da-4f09-9bca-79a215669f68_mirnaseq_gdc_realn.bam 251652815 BAM harmonized CPTAC3 ce5dac62-bae6-4013-bcde-dc7ed2009d5b 86ae91cc39d7b329b8a3fbf24d981c26 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.RNA-Seq.chimeric.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.chimeric.gdc_realn.bam 39368977 BAM chimeric harmonized CPTAC3 6180ca04-ad38-4c95-bdd1-bea8de8c9425 e749eeb9ae7878689affb2e87db202d0 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.chimeric.gdc_realn.bam 44387738 BAM chimeric harmonized CPTAC3 393b1ebd-db36-487f-a77e-4124cb9ecc34 10ff373751da00edf2bb901af67b6044 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.RNA-Seq.genomic.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.genomic.gdc_realn.bam 6873532336 BAM genomic harmonized CPTAC3 3cec932c-c9d6-4c94-9578-7aee3bcef723 30095e8fa70204b36a0f9274cfb725c1 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.genomic.gdc_realn.bam 10067897434 BAM genomic harmonized CPTAC3 e6f0603d-967c-409c-bab2-7480b7a029fc 9ea87e8d5c69443be9acfe8483907a38 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.RNA-Seq.S10_L003_R1.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 3727522006 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 3239d526-b422-40a6-9101-0ecaa0d593e3 2ad812bfd0caeefb414848409a542c0e {"aliquot_tag": "ALQ_4bb491e5", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.RNA-Seq.S10_L003_R2.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 3614155260 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 10bd76f6-3520-42ca-ba2c-f51ea8fde07d 766b21e07836d46f4ee05bbf8b217317 {"aliquot_tag": "ALQ_4bb491e5", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.RNA-Seq.S4_L001_R1.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3991034378 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 4a1f3026-ed39-4b21-82e4-9ba14ccbee40 a688d2376b17c21b7a78e1b203611aa5 {"aliquot_tag": "ALQ_e66ba5c4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.RNA-Seq.S4_L001_R2.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4249427390 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 0714c54f-a096-4e96-ac18-54d9703396bf 01ca764e78347e28c275b81f70a611b9 {"aliquot_tag": "ALQ_e66ba5c4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.RNA-Seq.transcriptome.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.transcriptome.gdc_realn.bam 8287127496 BAM transcriptome harmonized CPTAC3 2ec4679f-9f91-4874-a125-e349974db60d ad848240a823189659417962f6c7c741 {"aliquot_tag": "ALQ_4bb491e5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.transcriptome.gdc_realn.bam 9755163097 BAM transcriptome harmonized CPTAC3 a50b5c53-23a2-45cd-b5da-5be3807facb0 6e4ab9b8b3280a7d0ef2fd3a7f3c28d8 {"aliquot_tag": "ALQ_e66ba5c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.WGS.A C3N-01214 CCRCC WGS tissue_normal CPT0075570009 CPT0075570009.WholeGenome.RP-1303.bam 59618084354 BAM submitted_aligned CPTAC3 76693a7a-af8d-4163-bb3d-19698dfcd916 27a4a4b042f7afc3c07f1e6175660eec {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.WGS.A.hg38 C3N-01214 CCRCC WGS tissue_normal CPT0075570009 1a4c6633-0caf-47e3-a9e5-287c2864651d_wgs_gdc_realn.bam 87908498248 BAM harmonized CPTAC3 13854138-ba54-4b41-b4fc-8fb5dbae60cf 0ec77796333942e0f97c542d17f77802 {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.WGS.N C3N-01214 CCRCC WGS blood_normal CPT0075620002 CPT0075620002.WholeGenome.RP-1303.bam 76648223970 BAM submitted_aligned CPTAC3 942bf752-0711-4632-8855-bbe625de13c3 3376690f5cf653b1fb517a205766f55a {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01214.WGS.N.hg38 C3N-01214 CCRCC WGS blood_normal CPT0075620002 68ccdeb9-9c90-4895-b97d-80761d49f19c_gdc_realn.bam 114493148754 BAM harmonized CPTAC3 4d5d9fcf-8968-4f9b-a1ab-45929de98a27 decdec2b6cc395252645e1b98ca95c70 {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01214.WGS.T C3N-01214 CCRCC WGS tumor CPT0075560006 CPT0075560006.WholeGenome.RP-1303.bam 84252921892 BAM submitted_aligned CPTAC3 8c93f15e-0245-4851-8b6f-9772d572d88d e699166702ff5f1b30ba50571449cd07 {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.WGS.T.hg38 C3N-01214 CCRCC WGS tumor CPT0075560006 cae3270e-4e3e-4cc1-9dee-5d2de40e6e63_gdc_realn.bam 126632968063 BAM harmonized CPTAC3 0d1f036b-6db6-4f5c-b6b6-be16dbe8c972 5c10f019e82bdb73caaaa60ef4c64ebd {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.WXS.A C3N-01214 CCRCC WXS tissue_normal CPT0075570009 CPT0075570009.WholeExome.RP-1303.bam 29098090222 BAM submitted_aligned CPTAC3 c6dd2dd7-ab36-462d-a142-09b77b04c110 544414c5dc3e70749130961e9dbdb4fb {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.WXS.A.hg38 C3N-01214 CCRCC WXS tissue_normal CPT0075570009 1a4c6633-0caf-47e3-a9e5-287c2864651d_wxs_gdc_realn.bam 39352991909 BAM harmonized CPTAC3 34109d5e-140d-4fcb-ad68-55bff61ba867 1773a5ffb99ee5a5a77b9d8212222a99 {"aliquot_tag": "ALQ_db0b8c74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01214.WXS.N C3N-01214 CCRCC WXS blood_normal CPT0075620002 CPT0075620002.WholeExome.RP-1303.bam 29248264123 BAM submitted_aligned CPTAC3 8a601647-5ccc-4af5-ad91-c65ef5d5c339 2ed2ab3ae18c0440f1229544aa620df3 {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01214.WXS.N.hg38 C3N-01214 CCRCC WXS blood_normal CPT0075620002 68ccdeb9-9c90-4895-b97d-80761d49f19c_gdc_realn.bam 39621420718 BAM harmonized CPTAC3 eabb7049-e2f9-44af-90be-01d5c496ccc6 a9d0230d44200481df200820be235730 {"aliquot_tag": "ALQ_2ada822", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01214.WXS.T C3N-01214 CCRCC WXS tumor CPT0075560006 CPT0075560006.WholeExome.RP-1303.bam 38764534502 BAM submitted_aligned CPTAC3 d3d551a3-11a6-4584-9e6c-03bfc1468f25 4def0c7a414aa6618de19e768dc36ffa {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01214.WXS.T.hg38 C3N-01214 CCRCC WXS tumor CPT0075560006 cae3270e-4e3e-4cc1-9dee-5d2de40e6e63_gdc_realn.bam 53781194474 BAM harmonized CPTAC3 c6af3880-b6f9-4a6d-b473-bd82e256ae4f 5817550e230ff3da3dbe2a8c1bff1dee {"aliquot_tag": "ALQ_76d4b855", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.MethArray.Green.T C3N-01217 UCEC Methylation_Array tumor CPT0076500006 202163550072_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3fd361c0-f432-4977-a957-f3b73a7ec5bf 5450482bf01b2e85e50c710380f35ab0 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.MethArray.Red.T C3N-01217 UCEC Methylation_Array tumor CPT0076500006 202163550072_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 a3c27a72-713d-48f4-8534-be1d4e8be73d 077f2118db4684492a4394e26925d5c6 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.miRNA-Seq.S1_L006_R1.T C3N-01217 UCEC miRNA-Seq tumor CPT0076500009 181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L006_R1_001.unaln.bam 195169636 BAM S1_L006_R1 submitted_unaligned CPTAC3 e0cbb9ad-fb3c-433b-9169-d0acd89433fb 8e622aef8ab391370ea38970ab5e7aaa {"aliquot_tag": "ALQ_58c34af9", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.miRNA-Seq.T.hg38 C3N-01217 UCEC miRNA-Seq tumor CPT0076500009 a6ae24ae-db56-45c8-a90b-a755eb50e99c_mirnaseq_gdc_realn.bam 220247415 BAM harmonized CPTAC3 687aebe0-bf35-4c1b-9400-2295d1e9bd04 c94977bff48f9437ba01cee32ef71f36 {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.chimeric.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.chimeric.gdc_realn.bam 65658426 BAM chimeric harmonized CPTAC3 6d4dd08d-8b98-44e6-a370-470bc7de04da ee85454e451590596a3c5adfbdc7073d {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.chimeric.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.chimeric.gdc_realn.bam 120374506 BAM chimeric harmonized CPTAC3 723eaea1-7a5c-482a-8bd0-1e4c60b991f5 9b3a830d235f8198e2aa554eb975ca1b {"aliquot_tag": "ALQ_a398640b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.genomic.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.genomic.gdc_realn.bam 9019200004 BAM genomic harmonized CPTAC3 0e10f8c0-0a6c-4329-acdc-63cd7e50f1d5 64ee042fba7aa2eaee7e31abe27991c0 {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.genomic.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.genomic.gdc_realn.bam 8928089303 BAM genomic harmonized CPTAC3 12792da2-b4dc-4b37-98f1-e7b5614f22f7 8bf008c2649a33fff09eb84d700dc533 {"aliquot_tag": "ALQ_a398640b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.S22_L006_R1.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4249514878 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 e60a5351-d5bd-4e4c-b9d2-64fcdca999b1 0b81b9fb58f42a4195eb3fa3c52513f6 {"aliquot_tag": "ALQ_58c34af9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.S22_L006_R2.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4641396122 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 03100748-7dc8-4f11-a46f-9153d3769556 5a512a3a052cc8c74fbd51e7966f8d87 {"aliquot_tag": "ALQ_58c34af9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.S23_R1.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R1_001.fastq.gz 4635119896 FASTQ S23_R1 submitted_unaligned CPTAC3 9be9f41f-f36b-4e64-ba7f-5bfcb46c5acf 82016f40a6af85be40ae7aa95506f568 {"aliquot_tag": "ALQ_a398640b", "sample": "S23", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.S23_R2.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R2_001.fastq.gz 4810551716 FASTQ S23_R2 submitted_unaligned CPTAC3 fb2d686d-02db-40c0-a5f7-3d40c2c583db 7f37c396378fbc049bc1595d5b887b94 {"aliquot_tag": "ALQ_a398640b", "sample": "S23", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.transcriptome.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.transcriptome.gdc_realn.bam 10166859106 BAM transcriptome harmonized CPTAC3 77fc49f3-8a9e-433b-ad4c-541fcb01356e 9d4ae872385c680422fdd5f609e186fe {"aliquot_tag": "ALQ_58c34af9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.RNA-Seq.transcriptome.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.transcriptome.gdc_realn.bam 4656619976 BAM transcriptome harmonized CPTAC3 5f4348d3-1c02-4f98-af28-afefda52d031 5223eeed915fbc3feed7a5a9d4000322 {"aliquot_tag": "ALQ_a398640b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.WGS.N C3N-01217 UCEC WGS blood_normal CPT0076580002 CPT0076580002.WholeGenome.RP-1303.bam 70065926888 BAM submitted_aligned CPTAC3 651f0870-292f-4f49-9774-cf1589860087 78af5824dae265f3aedc3c1917ccc7d0 {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01217.WGS.N.hg38 C3N-01217 UCEC WGS blood_normal CPT0076580002 b198fef8-363e-4231-97b0-2b31b0f928fa_gdc_realn.bam 106812640997 BAM harmonized CPTAC3 1a91f81d-f6e4-4ce3-9d38-0ab56f84767b 0d40daafad8439fd37ad72b871ac4821 {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01217.WGS.T C3N-01217 UCEC WGS tumor CPT0076500006 CPT0076500006.WholeGenome.RP-1303.bam 65512228992 BAM submitted_aligned CPTAC3 27552a72-0d2c-4307-aefc-1cd193436953 bfb646c4720be88e51408ec4abc1b85e {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.WGS.T.hg38 C3N-01217 UCEC WGS tumor CPT0076500006 73ad916a-e94f-45f8-9ca7-3de307f3a46c_gdc_realn.bam 98535558446 BAM harmonized CPTAC3 9a74ea27-cda9-4e07-a710-db1b432ecf4e 8edac89d6502e741fa1268b748c00694 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.WXS.N C3N-01217 UCEC WXS blood_normal CPT0076580002 CPT0076580002.WholeExome.RP-1303.bam 29399626663 BAM submitted_aligned CPTAC3 d2c55ed8-a5af-40b4-87f2-769084ef8832 357adb5ec23fd64961dda375f8f8be8b {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01217.WXS.N.hg38 C3N-01217 UCEC WXS blood_normal CPT0076580002 b198fef8-363e-4231-97b0-2b31b0f928fa_gdc_realn.bam 39654548665 BAM harmonized CPTAC3 c4fd71e5-acf9-4b52-a1bb-e1f757042066 6ed57c027ec684fea912be4b84556019 {"aliquot_tag": "ALQ_ff61d8b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01217.WXS.T C3N-01217 UCEC WXS tumor CPT0076500006 CPT0076500006.WholeExome.RP-1303.bam 28160122474 BAM submitted_aligned CPTAC3 a87a69f6-fc98-4521-935d-1f922bfd72af cc1bb45a444b6a704e6f4c766e50ed08 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01217.WXS.T.hg38 C3N-01217 UCEC WXS tumor CPT0076500006 73ad916a-e94f-45f8-9ca7-3de307f3a46c_gdc_realn.bam 38771060949 BAM harmonized CPTAC3 c549bd7c-0935-4276-a507-7b7fc9b54a60 f5c5ef2b923a25e8d6634a867a871f81 {"aliquot_tag": "ALQ_c87c5768", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.MethArray.Green.T C3N-01219 UCEC Methylation_Array tumor CPT0076160006 202178770083_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 20df07ad-7a6a-4dcc-aef0-f3a03a652e0a 6d2e6efd39e76c59264d8412a0eb904d {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.MethArray.Red.T C3N-01219 UCEC Methylation_Array tumor CPT0076160006 202178770083_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 d5e7bd86-a534-4748-856a-795d2cc2c57c 47a64e451bd76f9246a820bff9f5476c {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.miRNA-Seq.S2_L005_R1.T C3N-01219 UCEC miRNA-Seq tumor CPT0076160009 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L005_R1_001.unaln.bam 253861019 BAM S2_L005_R1 submitted_unaligned CPTAC3 195a1013-613f-465d-a1bc-86e2bae3900b c473ede6c8347a2210fd12261cf3997a {"aliquot_tag": "ALQ_4c12fd4f", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.miRNA-Seq.T.hg38 C3N-01219 UCEC miRNA-Seq tumor CPT0076160009 15ca3a99-1a54-49be-80ec-06b9d7ffed47_mirnaseq_gdc_realn.bam 280432556 BAM harmonized CPTAC3 9311e783-374f-48be-a303-eb1c80bbd8ff 60c7797a7c649161e42547c65822373e {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.chimeric.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.chimeric.gdc_realn.bam 52360346 BAM chimeric harmonized CPTAC3 2f2ae3e8-b69a-4920-8f25-8091d6bbe148 7711bd763de3617aae5552376fb03664 {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.chimeric.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.chimeric.gdc_realn.bam 182580929 BAM chimeric harmonized CPTAC3 556bdec9-2c65-402c-a788-ffd86001f5da 4cda510e38968cdf425fe85b9fc3eed3 {"aliquot_tag": "ALQ_4b1df273", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.genomic.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.genomic.gdc_realn.bam 9143110736 BAM genomic harmonized CPTAC3 ce386d5a-e6b1-4f5b-858b-7c59dd627851 2d3fd611f57e547b82412203222a1a9b {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.genomic.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.genomic.gdc_realn.bam 9964225183 BAM genomic harmonized CPTAC3 96901bf6-cba6-41ad-a569-158c00c8f2bc 9b67157ca0f1ab36eec0518faaced4ab {"aliquot_tag": "ALQ_4b1df273", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.S23_L006_R1.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R1_001.fastq.gz 3838496765 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 e20212d2-8826-470e-8ea9-fd482194e637 1f509d18ccd2717c51095d99ac0c7ab2 {"aliquot_tag": "ALQ_4c12fd4f", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.S23_L006_R2.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4181958224 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 4411b385-dfc9-42a7-b200-a2ef23950c1e ade1a0d6b77eef02fd86fa00ff69f345 {"aliquot_tag": "ALQ_4c12fd4f", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.S51_R1.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R1_001.fastq.gz 6172623004 FASTQ S51_R1 submitted_unaligned CPTAC3 d4e51395-c442-420b-aa6f-d4285f83629b 171ae05520b7d727a9000d5ae6caea52 {"aliquot_tag": "ALQ_4b1df273", "sample": "S51", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.S51_R2.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R2_001.fastq.gz 6441627708 FASTQ S51_R2 submitted_unaligned CPTAC3 5ddc4cf7-51f3-4c6d-815d-5fa0b7e8135b 01be7b610741685fcfa5ec8223753db9 {"aliquot_tag": "ALQ_4b1df273", "sample": "S51", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.transcriptome.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.transcriptome.gdc_realn.bam 8499939236 BAM transcriptome harmonized CPTAC3 25937390-2979-4ab5-b71c-f9f8ec25c342 5be974951beaab1200be105bad88db9d {"aliquot_tag": "ALQ_4c12fd4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.RNA-Seq.transcriptome.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.transcriptome.gdc_realn.bam 6071601585 BAM transcriptome harmonized CPTAC3 fd4b583b-e728-46a9-86f3-1294a00230c9 5fd2a01766793944ac2322db70e19db6 {"aliquot_tag": "ALQ_4b1df273", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.WGS.N C3N-01219 UCEC WGS blood_normal CPT0076220002 CPT0076220002.WholeGenome.RP-1303.bam 68890986672 BAM submitted_aligned CPTAC3 ff01b4dc-a0e5-4ab4-adfd-104a1b16139a 072d43ef4de636c480dea17c2b75fad0 {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01219.WGS.N.hg38 C3N-01219 UCEC WGS blood_normal CPT0076220002 d4c44cff-6bfd-46e0-a542-426345f7afff_gdc_realn.bam 104941785202 BAM harmonized CPTAC3 130cc23b-3c75-406e-b2e3-6c762c8dcfc7 dc8e9ce8d9e3115458493a9ffe2d07df {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01219.WGS.T C3N-01219 UCEC WGS tumor CPT0076160006 CPT0076160006.WholeGenome.RP-1303.bam 63314749909 BAM submitted_aligned CPTAC3 d4dbe264-66d3-4ef8-a990-c4c105e2d4e7 af77cc27a08da47d864aa808a5f60c1b {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.WGS.T.hg38 C3N-01219 UCEC WGS tumor CPT0076160006 14e343cd-1aff-4e8b-8bd8-7c4813ec2405_gdc_realn.bam 95267238417 BAM harmonized CPTAC3 8fc2d44a-4784-476b-83f4-d860c3e7ef4b b6cd06e0deb51b62771e306f8b8c0b5b {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.WXS.N C3N-01219 UCEC WXS blood_normal CPT0076220002 CPT0076220002.WholeExome.RP-1303.bam 29689961810 BAM submitted_aligned CPTAC3 177e63f2-7620-4c1d-8b8d-423880ed4f7a 58508943a35f3eca75944ddd4b40b88b {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01219.WXS.N.hg38 C3N-01219 UCEC WXS blood_normal CPT0076220002 d4c44cff-6bfd-46e0-a542-426345f7afff_gdc_realn.bam 40317131638 BAM harmonized CPTAC3 6b91773f-2a59-4a80-ac8c-f7bd3a92755d 7f4a152f49ebd7dd3bb0a6f4305ae11a {"aliquot_tag": "ALQ_a8d4f0a9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01219.WXS.T C3N-01219 UCEC WXS tumor CPT0076160006 CPT0076160006.WholeExome.RP-1303.bam 35664978668 BAM submitted_aligned CPTAC3 562fe4a5-c4e2-4798-81b0-1f62f64e967a aecbf5654759fde19664de73a72fc195 {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01219.WXS.T.hg38 C3N-01219 UCEC WXS tumor CPT0076160006 14e343cd-1aff-4e8b-8bd8-7c4813ec2405_gdc_realn.bam 48731152656 BAM harmonized CPTAC3 8f2fb70a-9111-4662-b07b-937b3880b9f2 89cd893b941ca11ef9c2a2a1a8ffb7de {"aliquot_tag": "ALQ_dcade0de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_7b1a0f24.miRNA-Seq.S1_L004_R1.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076340009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGAGC_S1_L004_R1_001.unaln.bam 277168649 BAM S1_L004_R1 submitted_unaligned CPTAC3 3381f99f-e5d8-4a18-8b18-c3ab6a019635 44402ddeb33833b1fb9011429f480bb9 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_7b1a0f24.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076340009 e20d7b23-ab65-4737-91a5-d2f631dc8bd2_mirnaseq_gdc_realn.bam 302755705 BAM harmonized CPTAC3 e0710ed1-15be-43b2-b3c9-a16667cef543 0cd1c9db4f3a92bc7d75634fa21de45a {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_7b1a0f24.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.chimeric.gdc_realn.bam 184757655 BAM chimeric harmonized CPTAC3 40485767-980a-442e-b56f-f17c223fd43f 0b3c670260a2c33fc293c7b074833ff7 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_7b1a0f24.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.genomic.gdc_realn.bam 7827754877 BAM genomic harmonized CPTAC3 9b5a28ae-42f0-4289-b20d-cbb92b4430d6 4169fb3736ec33d194f33b32b3ae138b {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_7b1a0f24.RNA-Seq.S7_L002_R1.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R1_001.fastq.gz 3636707658 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 3e813950-7da9-4dd9-a4a6-fde17a82a0dd a390a574382f44f8f9dd3759bb381a5a {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_7b1a0f24.RNA-Seq.S7_L002_R2.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R2_001.fastq.gz 4290988096 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 fa96db8d-5e7b-4a03-96c7-9ee08a3d7179 74ea2a1be4c72bfd36034ac478440e88 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_7b1a0f24.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.transcriptome.gdc_realn.bam 11588006443 BAM transcriptome harmonized CPTAC3 054b59d9-3afa-40ff-a9a5-b3d96a618bfb 7fda625d50afeb991eb0966b117a1959 {"aliquot_tag": "DUP_7b1a0f24", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_93f0b778.miRNA-Seq.S12_L001_R1.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076320014 200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L001_R1_001.unaln.bam 271185910 BAM S12_L001_R1 submitted_unaligned CPTAC3 2dbed1b3-763d-435f-8fb9-917bf13c1a56 94763f7149c7a3fb5f6eea5f3d960cad {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_93f0b778.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076320014 1fe5e835-6ea6-43ef-bc3c-baf6df9ca739_mirnaseq_gdc_realn.bam 291801924 BAM harmonized CPTAC3 e4b5d267-a4f1-45e6-9ef6-b3fbc1b9e06e 8bc2041b037efba2eb5d107b4ee0a0da {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_93f0b778.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.chimeric.gdc_realn.bam 35029284 BAM chimeric harmonized CPTAC3 e2056d2c-67ab-4dd5-9a0e-185d33850a26 83c0e22b9ce547dc6a3bda621cbea9b9 {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_93f0b778.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.genomic.gdc_realn.bam 7402048823 BAM genomic harmonized CPTAC3 f1322c99-6951-45af-89bc-9a2471f3704c 51e652596679aa161365ad9e2a147970 {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_93f0b778.RNA-Seq.S1_L001_R1.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 3407315825 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 390a79d2-0957-45b4-af79-059f55e8865a 305d7fa3b6912a2d7105ea81ff787e3c {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_93f0b778.RNA-Seq.S1_L001_R2.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 4201860940 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 c9779aff-d269-4ba8-9abf-801cc26e10f7 6903c4e5c31f6edb65a1b17c2957e7cd {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_93f0b778.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.transcriptome.gdc_realn.bam 11057802573 BAM transcriptome harmonized CPTAC3 a535009a-eb3c-4577-bf61-882642ea0006 ed0d8ca36ce97297768c9b35298ec2a1 {"aliquot_tag": "DUP_93f0b778", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_e39a43f7.MethArray.Green.T C3N-01220 CCRCC Methylation_Array tumor CPT0076320011 204367490043_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6fa99b43-1023-48df-a9fa-68d9c30e306b 023b4f13e38a1c937368bd754ebe9c78 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_e39a43f7.MethArray.Red.T C3N-01220 CCRCC Methylation_Array tumor CPT0076320011 204367490043_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 489dd2a2-90d6-4046-b6f1-93332ad3346e 8e8342010cc7c0e65dcd159b972be692 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_e39a43f7.WGS.T C3N-01220 CCRCC WGS tumor CPT0076320011 CPT0076320011.WholeGenome.RP-2158.bam 20896030011 BAM submitted_aligned CPTAC3 21ec5b65-85bc-445d-87f9-74f86751788e baf5771b4890852af98f8d5aa5699912 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_e39a43f7.WGS.T.hg38 C3N-01220 CCRCC WGS tumor CPT0076320011 43ec9bee-5438-4c71-9c45-fad51cabea55_wgs_gdc_realn.bam 59947058257 BAM harmonized CPTAC3 6ed3b44b-5e9a-48b0-8d84-2ca368602eb9 aa4141136499c998db9913e8233e47f8 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_e39a43f7.WXS.T C3N-01220 CCRCC WXS tumor CPT0076320011 CPT0076320011.WholeExome.RP-1303.bam 23915491163 BAM submitted_aligned CPTAC3 e4d0b9c6-9286-4577-8ef6-43c7cde1390f 8a15ca5896805df15200e347788e4f35 {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_e39a43f7.WXS.T.hg38 C3N-01220 CCRCC WXS tumor CPT0076320011 43ec9bee-5438-4c71-9c45-fad51cabea55_wxs_gdc_realn.bam 33407040203 BAM harmonized CPTAC3 fbb6789e-e42a-4cbb-8f9d-e042ff294a06 b633bc0bbbb22251e14a8760d1a9d69d {"aliquot_tag": "DUP_e39a43f7", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_f5d3e7ed.MethArray.Green.T C3N-01220 CCRCC Methylation_Array tumor CPT0076340012 204372030022_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 bf81ac9a-3226-4c18-851d-6f562839e04d 8d9fba20aa9602e56fe0f7a17d455319 {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_f5d3e7ed.MethArray.Red.T C3N-01220 CCRCC Methylation_Array tumor CPT0076340012 204372030022_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 fd5a752c-40f0-4964-bf45-b640d5144d58 7eefdefd2de33d94756f606e3e710b9e {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_f5d3e7ed.WGS.T C3N-01220 CCRCC WGS tumor CPT0076340012 CPT0076340012.WholeGenome.RP-2158.bam 25333569676 BAM submitted_aligned CPTAC3 3a83f057-b7b5-41a9-88e9-74d4bcade7cf a221e3a4114d57931ef51eaa9d1dc259 {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_f5d3e7ed.WGS.T.hg38 C3N-01220 CCRCC WGS tumor CPT0076340012 807221a2-cc6b-48e0-957c-ec6703e0bae7_wgs_gdc_realn.bam 74187766542 BAM harmonized CPTAC3 147ff43d-baba-465e-8018-f8df12a31d91 3eb5b1ab9b11652ff9ef032f4b3004ce {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_f5d3e7ed.WXS.T C3N-01220 CCRCC WXS tumor CPT0076340012 CPT0076340012.WholeExome.RP-1303.bam 21700841457 BAM submitted_aligned CPTAC3 9bb82efb-42bc-446c-9008-a767c61e7100 fae87c33835df7cdc8feb1901e570b8e {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.DUP_f5d3e7ed.WXS.T.hg38 C3N-01220 CCRCC WXS tumor CPT0076340012 807221a2-cc6b-48e0-957c-ec6703e0bae7_wxs_gdc_realn.bam 29614724670 BAM harmonized CPTAC3 5e5b5a07-e448-4815-affa-2cfc7651113e 9fb0c243a61e373fe643da3744a9c063 {"aliquot_tag": "DUP_f5d3e7ed", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.MethArray.Green.A C3N-01220 CCRCC Methylation_Array tissue_normal CPT0076350009 204930640064_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c7526124-d65d-4e82-a84b-130a813becc9 97891c9e440ce2a9cd804b9370bc40d0 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.MethArray.Green.T C3N-01220 CCRCC Methylation_Array tumor CPT0076330006 202163550076_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4e214611-0a6e-4805-87c9-15c4cb644bff 841f0c18757e19f2953a03d9f595fa01 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.MethArray.Red.A C3N-01220 CCRCC Methylation_Array tissue_normal CPT0076350009 204930640064_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 f9d7e4a8-8f5e-4ccb-9030-73b28d9833d2 8fbf886c565f6071a691641c6c58040d {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.MethArray.Red.T C3N-01220 CCRCC Methylation_Array tumor CPT0076330006 202163550076_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 740e9a14-4c09-4d1d-af5a-002b70afd5bf 57bf63247d6fe9fdcac4ed4ce1d54bbd {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.miRNA-Seq.A.hg38 C3N-01220 CCRCC miRNA-Seq tissue_normal CPT0076350006 51bf5d7e-a9fd-45e0-b91a-52a34369eddb_mirnaseq_gdc_realn.bam 191634163 BAM harmonized CPTAC3 0abd551a-ce61-4731-b44d-5cc7eecd40f6 6e888ff31c334766418597c6fcb85655 {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.miRNA-Seq.S17_L003_R1.A C3N-01220 CCRCC miRNA-Seq tissue_normal CPT0076350006 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 171349465 BAM S17_L003_R1 submitted_unaligned CPTAC3 c3359fb0-d474-4009-b3a0-8652a32a06c9 38b03dbd71b193e11a5b873ca8bc1799 {"aliquot_tag": "ALQ_d6c53b05", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.miRNA-Seq.S33_L004_R1.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076330008 181113_UNC31-K00269_0164_AH23NNBBXY_GATCAG_S33_L004_R1_001.unaln.bam 225857428 BAM S33_L004_R1 submitted_unaligned CPTAC3 53eecf2b-a829-4e39-b8d0-0aea47593388 8cea17f0db8835dedec3af66a5af7bcc {"aliquot_tag": "ALQ_be3de3a2", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076330008 fd755eae-52b1-40df-99b9-d822ac89dfb8_mirnaseq_gdc_realn.bam 250786542 BAM harmonized CPTAC3 fe2aa0a8-181c-4151-b4e1-868f7f600da4 c9fa3fbe8db87377f287748eaf387ced {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.RNA-Seq.chimeric.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.chimeric.gdc_realn.bam 65429902 BAM chimeric harmonized CPTAC3 85bcf5ad-f363-4194-9ebc-44af6a50df0d c494e4dacf8376f371f04fc28f72a245 {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.chimeric.gdc_realn.bam 50792236 BAM chimeric harmonized CPTAC3 3cc8320d-5bd5-41dd-b658-50d754c1b5a5 54f7088dcc9024df6e513a066de74d62 {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.RNA-Seq.genomic.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.genomic.gdc_realn.bam 9061904295 BAM genomic harmonized CPTAC3 39de6d82-1585-4514-9038-42d88946f1c3 812512d01663ad0084846b8a4a1555f8 {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.genomic.gdc_realn.bam 7249853799 BAM genomic harmonized CPTAC3 21d72bba-6d17-40c5-8be7-c9ae34d954c9 87ea62c7e1c85dd3a1c6e5e7507106e5 {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.RNA-Seq.S12_L003_R1.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R1_001.fastq.gz 4547071907 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 6871b6fe-05b3-4de6-ae72-4ff2312f0383 39efdd2b594511cc0dc6d4d49cae5664 {"aliquot_tag": "ALQ_d6c53b05", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.RNA-Seq.S12_L003_R2.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R2_001.fastq.gz 4928211983 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 445899d0-1c6f-41be-aded-b4565954d913 a04667eb2f9ca6ae987aa66b2b324664 {"aliquot_tag": "ALQ_d6c53b05", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.RNA-Seq.S7_L008_R1.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3479993988 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 a7721c68-237b-487d-8cff-3c5467cee627 fc23689816af5e309ad558f490e5d9d1 {"aliquot_tag": "ALQ_be3de3a2", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.RNA-Seq.S7_L008_R2.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R2_001.fastq.gz 3752516932 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 302d01d4-74bd-4971-8955-86e606e3aad3 3c88c225a2f4184e27d4aaed740f047a {"aliquot_tag": "ALQ_be3de3a2", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.RNA-Seq.transcriptome.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.transcriptome.gdc_realn.bam 12459867482 BAM transcriptome harmonized CPTAC3 00257c9f-1dd6-4f80-86d0-a8351a9c2c21 32a8476d7067747fb7e3d3810bf9daaf {"aliquot_tag": "ALQ_d6c53b05", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.transcriptome.gdc_realn.bam 10744548765 BAM transcriptome harmonized CPTAC3 4e70c764-33c3-44e6-a4cc-77d68ec2ef6e e7a6c11a99d9cc4a1637ba418e064b9e {"aliquot_tag": "ALQ_be3de3a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.WGS.A C3N-01220 CCRCC WGS tissue_normal CPT0076350009 CPT0076350009.WholeGenome.RP-1303.bam 54176269584 BAM submitted_aligned CPTAC3 d7f45be8-fbd8-4f67-8c56-d1a3705eaf2a 84f6f1d7048e5af4dbc7c145637dd785 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.WGS.A.hg38 C3N-01220 CCRCC WGS tissue_normal CPT0076350009 0dbd842b-51dc-4a2d-8648-b704b7fe871f_wgs_gdc_realn.bam 79472851933 BAM harmonized CPTAC3 d429a149-f6ca-46c9-9e81-ee297bce409a 92ef0664edcb6d82422350f1007f2888 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.WGS.N C3N-01220 CCRCC WGS blood_normal CPT0076400002 CPT0076400002.WholeGenome.RP-1303.bam 60926784017 BAM submitted_aligned CPTAC3 7b54ecbb-07d5-4161-9a29-72f0335c3f4f 273453a70a4c73bdf97e4942f08e186c {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01220.WGS.N.hg38 C3N-01220 CCRCC WGS blood_normal CPT0076400002 9d8605f9-6281-4ce5-a4fa-4399e1902769_gdc_realn.bam 91932048950 BAM harmonized CPTAC3 d11e1200-aaa5-4357-9955-8fedcd216fa8 2435ae8801a30ce0cd5ad6f681bb4699 {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01220.WGS.T C3N-01220 CCRCC WGS tumor CPT0076330006 CPT0076330006.WholeGenome.RP-1303.bam 69230827192 BAM submitted_aligned CPTAC3 05083b1e-8160-427a-8428-9c7eee0f91b2 b4308d1c893c17346f0d0bb53f823422 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.WGS.T.hg38 C3N-01220 CCRCC WGS tumor CPT0076330006 5e08ba1d-7269-475b-bda6-e685083916a8_gdc_realn.bam 104474279230 BAM harmonized CPTAC3 8c3f21d9-c6cd-4036-99f9-83273175ca52 26af60183c8967cc02203b3f711f319a {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.WXS.A C3N-01220 CCRCC WXS tissue_normal CPT0076350009 CPT0076350009.WholeExome.RP-1303.bam 37705204989 BAM submitted_aligned CPTAC3 028b4d82-43b9-4fcf-9ba1-d5fa41e0bab5 8f3835bd2979b41a9f3e659ea9fc1ba1 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.WXS.A.hg38 C3N-01220 CCRCC WXS tissue_normal CPT0076350009 0dbd842b-51dc-4a2d-8648-b704b7fe871f_wxs_gdc_realn.bam 50459240515 BAM harmonized CPTAC3 bfee0e0d-5839-425e-b734-eb0e13bfdd3f db684f2ceec6248363770e11834d1730 {"aliquot_tag": "ALQ_467a2694", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01220.WXS.N C3N-01220 CCRCC WXS blood_normal CPT0076400002 CPT0076400002.WholeExome.RP-1303.bam 32561383237 BAM submitted_aligned CPTAC3 60f90d9b-f199-4ab6-9f5f-5500b41548fe a70a2a060056e0f57a8453902fa023fa {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01220.WXS.N.hg38 C3N-01220 CCRCC WXS blood_normal CPT0076400002 9d8605f9-6281-4ce5-a4fa-4399e1902769_gdc_realn.bam 43802189710 BAM harmonized CPTAC3 00678e28-01cc-423a-a99b-5b9ea325cf2b 6dd26ea5e9098e54de8dc1629ae74e63 {"aliquot_tag": "ALQ_44d40d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01220.WXS.T C3N-01220 CCRCC WXS tumor CPT0076330006 CPT0076330006.WholeExome.RP-1303.bam 31659435663 BAM submitted_aligned CPTAC3 451a97b1-9d09-4cd4-ba90-1b0f5b212f24 a67ad144222973ba77d92c326d0786f5 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01220.WXS.T.hg38 C3N-01220 CCRCC WXS tumor CPT0076330006 5e08ba1d-7269-475b-bda6-e685083916a8_gdc_realn.bam 44272718325 BAM harmonized CPTAC3 61545e14-8d82-4101-8397-a13fc35295c5 4c32d375320958a8ab92b38ae2f59a44 {"aliquot_tag": "ALQ_5985cea5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_17775369.miRNA-Seq.S3_L004_R1.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077470006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L004_R1_001.unaln.bam 323159596 BAM S3_L004_R1 submitted_unaligned CPTAC3 b870a25b-6664-4383-83b2-22602e6e6ba6 8c832c054bf1c6c1f9afb7e2ad58b766 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_17775369.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077470006 b74acaa4-369f-4a1b-847e-a293ceaaa880_mirnaseq_gdc_realn.bam 358343624 BAM harmonized CPTAC3 a8732aef-a18e-4027-af82-72ecd309b025 28483c36ca58dc7f8f3533dc6211792d {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_17775369.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.chimeric.gdc_realn.bam 223401662 BAM chimeric harmonized CPTAC3 320ccd76-7a11-4833-aae9-935b6550fa76 fda7578afbc2318e0ea87a414eb400d4 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_17775369.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.genomic.gdc_realn.bam 8769293593 BAM genomic harmonized CPTAC3 a36e8c9f-ff1f-4757-97cb-a06bdead44d6 04aa3168fd05b233f30bd7043a5f867b {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_17775369.RNA-Seq.S12_L003_R1.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 4232641871 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 c497a706-0042-4a1d-8fa7-46e0858543a2 2a07651d2dc0c765acd6392e040d67df {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_17775369.RNA-Seq.S12_L003_R2.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 4931865743 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 175b3614-d9fb-4a4f-be79-911094a20cce abefeaf8711774e64dc6fabd6495b450 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_17775369.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.transcriptome.gdc_realn.bam 11292536720 BAM transcriptome harmonized CPTAC3 94157681-63ac-4e2e-a995-1d25b280a683 6433a2bdd21332306d0ba751b7f4f3c9 {"aliquot_tag": "DUP_17775369", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_598d929.MethArray.Green.T C3N-01261 CCRCC Methylation_Array tumor CPT0077480009 204367490029_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0b467d26-740e-4b5c-abe6-c651bf2afc21 27bb8b7e79be444be6039ddd74156215 {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_598d929.MethArray.Red.T C3N-01261 CCRCC Methylation_Array tumor CPT0077480009 204367490029_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 465642a9-6f97-42f3-b00e-7d76d4d795f9 3cdec7bc7b24164409be9889e2962f4e {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_598d929.WGS.T C3N-01261 CCRCC WGS tumor CPT0077480009 CPT0077480009.WholeGenome.RP-2158.bam 25731865155 BAM submitted_aligned CPTAC3 ed7207bd-ef5b-4b60-afb7-4052788bac49 f49fad5d3c5531fa2edd1edbf52bf0dd {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_598d929.WGS.T.hg38 C3N-01261 CCRCC WGS tumor CPT0077480009 4b842477-f45b-4b95-81fe-f99660014989_wgs_gdc_realn.bam 74911836154 BAM harmonized CPTAC3 52ab7155-a122-4cba-a276-b0c340512ade 30e415ddd4a876ba4b4264f5c3cde23c {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_598d929.WXS.T C3N-01261 CCRCC WXS tumor CPT0077480009 CPT0077480009.WholeExome.RP-1303.bam 22362534889 BAM submitted_aligned CPTAC3 18bf9a71-df55-422e-b5ad-c12a7731c0d7 72171deddef7c1d2f8e123f57bed5f39 {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_598d929.WXS.T.hg38 C3N-01261 CCRCC WXS tumor CPT0077480009 4b842477-f45b-4b95-81fe-f99660014989_wxs_gdc_realn.bam 30792886836 BAM harmonized CPTAC3 66ec9da8-631e-4162-be2b-3ebfd70990aa 6383396bc2ff586c9cc23c859e0a862d {"aliquot_tag": "DUP_598d929", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_87c84ef8.MethArray.Green.T C3N-01261 CCRCC Methylation_Array tumor CPT0077470009 204372030013_R01C01_Grn.idat 13677895 IDAT Green NA CPTAC3 bdc6052a-7b1b-4d3a-9079-ef000f5791a8 30bf989f954f5b1ce9cc0a9010d52833 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_87c84ef8.MethArray.Red.T C3N-01261 CCRCC Methylation_Array tumor CPT0077470009 204372030013_R01C01_Red.idat 13677895 IDAT Red NA CPTAC3 813d0149-207c-4265-a63b-507aa644a3de c682b869c78039cb7cacef87c9bff8dd {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_87c84ef8.WGS.T C3N-01261 CCRCC WGS tumor CPT0077470009 CPT0077470009.WholeGenome.RP-2158.bam 25879813649 BAM submitted_aligned CPTAC3 ec944137-0e6d-480d-b9bb-562e495dee33 25a1d6a1e1939bb1be5a80e8d6caa56b {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_87c84ef8.WGS.T.hg38 C3N-01261 CCRCC WGS tumor CPT0077470009 42e07145-2697-49bc-b54a-a0b8d6252b63_wgs_gdc_realn.bam 74631684415 BAM harmonized CPTAC3 bd697b2e-37d6-4c74-945a-e5e2880122c3 b8fab6d42e9b7247d9ece3b9b032c557 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_87c84ef8.WXS.T C3N-01261 CCRCC WXS tumor CPT0077470009 CPT0077470009.WholeExome.RP-1303.bam 21240754844 BAM submitted_aligned CPTAC3 3750acfa-8a61-46b2-addf-e7a24d122c31 65520e427bef60e3bc4bbda4ba27ec50 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_87c84ef8.WXS.T.hg38 C3N-01261 CCRCC WXS tumor CPT0077470009 42e07145-2697-49bc-b54a-a0b8d6252b63_wxs_gdc_realn.bam 29032079012 BAM harmonized CPTAC3 71c381f1-b25f-48ee-a388-f9e2644735ec 58f3fdf815db3c49ff40eb9cc7a32893 {"aliquot_tag": "DUP_87c84ef8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_9527c4b8.miRNA-Seq.S25_L004_R1.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077480006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACGAT_S25_L004_R1_001.unaln.bam 393524491 BAM S25_L004_R1 submitted_unaligned CPTAC3 a5f1dfb6-27de-4023-b9b9-8c1a9a9fb7a9 a9d6c6bfa2a1782284665fcd6c1527b4 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_9527c4b8.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077480006 a8df5a9e-3d35-497b-9261-82f1953c4080_mirnaseq_gdc_realn.bam 436046741 BAM harmonized CPTAC3 1f7a67fe-5434-4cef-b99a-92bff6d51844 634007af42b16681e72b6be3760684a0 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_9527c4b8.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.chimeric.gdc_realn.bam 257449426 BAM chimeric harmonized CPTAC3 8ee9bd34-2b1c-4801-a7d2-0224992418b5 e5fecf4394a492264545b94c00c54582 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_9527c4b8.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.genomic.gdc_realn.bam 7726245895 BAM genomic harmonized CPTAC3 85ccfaf2-642e-43ff-ad6c-8aa7a5de0d8b 01557b8f1212e6f528b449fa0083275c {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_9527c4b8.RNA-Seq.S11_L003_R1.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R1_001.fastq.gz 3786784188 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 94432a7f-6bc9-476f-b180-6cf3be17d99d bfa5728f0170ff8f0bbaa2a85d71a7b1 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_9527c4b8.RNA-Seq.S11_L003_R2.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R2_001.fastq.gz 4209702146 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 e84f5faf-e3b4-4324-91d2-699d6fbad519 2cbed543a36f3ec3c301e2f5ced6e5d8 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.DUP_9527c4b8.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.transcriptome.gdc_realn.bam 9416853650 BAM transcriptome harmonized CPTAC3 b77a9835-b214-4b4a-afa9-954b75a173a3 05602b3bd833b2519a930841b7204c30 {"aliquot_tag": "DUP_9527c4b8", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.MethArray.Green.A C3N-01261 CCRCC Methylation_Array tissue_normal CPT0077500009 204930640023_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e24f3118-4b8d-436e-a272-120fe41be4ed 788fb85143a79f5ace6e5c8127a2564a {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.MethArray.Green.T C3N-01261 CCRCC Methylation_Array tumor CPT0077490009 202184990059_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d00b0a0c-5332-4fff-8b9d-6a9428b2a35a 7aecaac59c865f47e34f6ea8880c6a06 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.MethArray.Red.A C3N-01261 CCRCC Methylation_Array tissue_normal CPT0077500009 204930640023_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 7bd13ef6-1ab7-4786-901e-9e179493667b 34ef88c0bbec4c5a32bdbb72f5c798d9 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.MethArray.Red.T C3N-01261 CCRCC Methylation_Array tumor CPT0077490009 202184990059_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 8d20c0ac-eff1-47e7-b6dc-80c80dfa3422 a60072db81368aa24dce82ea6a7cc8f9 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.miRNA-Seq.A.hg38 C3N-01261 CCRCC miRNA-Seq tissue_normal CPT0077500006 202100bc-7b09-4648-9f4f-ef8f760d0996_mirnaseq_gdc_realn.bam 182007436 BAM harmonized CPTAC3 0f8a7653-72b9-4e9c-b52a-5ea0ffcf4b2f 35e6b559cb82e0466dbd1ddfb4982a47 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.miRNA-Seq.S20_L003_R1.A C3N-01261 CCRCC miRNA-Seq tissue_normal CPT0077500006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 164844525 BAM S20_L003_R1 submitted_unaligned CPTAC3 9e439b78-0d19-409d-9555-9e51f3ea304e f9731d6d6142f5789ae9be11b07087bb {"aliquot_tag": "ALQ_6e0b5cdc", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.miRNA-Seq.S8_L008_R1.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077490006 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L008_R1_001.unaln.bam 217343665 BAM S8_L008_R1 submitted_unaligned CPTAC3 45479a7d-231a-4363-abda-89e845bfe773 ed6513912aaace50aeb0e73bd183888f {"aliquot_tag": "ALQ_a847ed08", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077490006 990eeb02-de23-4d83-99df-65b7babfbfa5_mirnaseq_gdc_realn.bam 240657784 BAM harmonized CPTAC3 dec0b9e9-0041-4062-92a8-d52f7e9971ad ac44eb590aaea7cde3ff2b353056be2c {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.RNA-Seq.chimeric.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.chimeric.gdc_realn.bam 75052516 BAM chimeric harmonized CPTAC3 fae1832f-218b-4f30-93c6-5433fe6bbca2 7705a0a298005a9399034dfe2d14c761 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.chimeric.gdc_realn.bam 219526899 BAM chimeric harmonized CPTAC3 fb5b0bdc-f08c-43e8-898f-ab020e8d05bf e018d5238756e98531ba0d839854b8a9 {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.RNA-Seq.genomic.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.genomic.gdc_realn.bam 6875447975 BAM genomic harmonized CPTAC3 a26331c7-9d6e-4db3-af92-055feb14d5a8 dd8841b43fbc2d2d490a5c8305733389 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.genomic.gdc_realn.bam 5702877798 BAM genomic harmonized CPTAC3 51679d02-120d-4664-88a8-f768f58d5681 c937007d2a28f744946c8743706cb9db {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.RNA-Seq.S3_L001_R1.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3171933083 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5e055bcb-7988-4721-abca-d6ba8ddf2859 aae8d12ccb6e018c19fc5b6828d66128 {"aliquot_tag": "ALQ_a847ed08", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.RNA-Seq.S3_L001_R2.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3503487635 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 eca54c3f-6f8a-48a5-ae0e-5f82c5d65522 7d4d0c50450ce43347cd23d2b8bbfdaa {"aliquot_tag": "ALQ_a847ed08", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.RNA-Seq.S6_L002_R1.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 3320794151 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 bf23dd02-c938-4b78-855e-fde50768436a 0c9bc6cdee59c3d8328ef0e5675c2428 {"aliquot_tag": "ALQ_6e0b5cdc", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.RNA-Seq.S6_L002_R2.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 3708468352 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 54968b79-2539-4097-90cc-160d7a2006c8 673c2e935208732a696dc73619628f7f {"aliquot_tag": "ALQ_6e0b5cdc", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.RNA-Seq.transcriptome.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.transcriptome.gdc_realn.bam 8544270633 BAM transcriptome harmonized CPTAC3 1ba65821-ae37-4628-9c52-ff6cf70fd434 853f94ff3cc65bc4b6bece7d1bb9ce03 {"aliquot_tag": "ALQ_6e0b5cdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.transcriptome.gdc_realn.bam 8004269212 BAM transcriptome harmonized CPTAC3 9c57de4d-0254-44cf-8a29-975480d870d2 7e48e70e3e0f631cf255f4594eea0d2d {"aliquot_tag": "ALQ_a847ed08", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.WGS.A C3N-01261 CCRCC WGS tissue_normal CPT0077500009 CPT0077500009.WholeGenome.RP-1303.bam 56275750780 BAM submitted_aligned CPTAC3 88fa7665-0c2d-465d-900a-5d7643f652d3 e5fd4081584a41ba23fda380eef42b59 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.WGS.A.hg38 C3N-01261 CCRCC WGS tissue_normal CPT0077500009 ff04c8ea-0993-4b3d-9cd1-a2f15a53c12d_wgs_gdc_realn.bam 83298986948 BAM harmonized CPTAC3 f0c4915d-35a7-42a3-9b63-a4ffce6740d0 e75165a1ceeda7f667017f5aed4be1e0 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.WGS.N C3N-01261 CCRCC WGS blood_normal CPT0077590002 CPT0077590002.WholeGenome.RP-1303.bam 75733928284 BAM submitted_aligned CPTAC3 f7b10229-a46a-4c2a-bfe8-7b7e0d0f7ba0 ed96be14bf0502385b36ee3271836dc2 {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01261.WGS.N.hg38 C3N-01261 CCRCC WGS blood_normal CPT0077590002 93bfb3d4-6285-4819-b54b-96c9994f54d4_gdc_realn.bam 113959147222 BAM harmonized CPTAC3 0149d329-7d6e-45c3-b60d-6655ef74d6e9 48328f6f758f0eb00beeeeff64fb721f {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01261.WGS.T C3N-01261 CCRCC WGS tumor CPT0077490009 CPT0077490009.WholeGenome.RP-1303.bam 64023121963 BAM submitted_aligned CPTAC3 959287fa-6f98-4809-b2e4-d97a18cd7ef0 306572e01a4daef23170139bffa8b830 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.WGS.T.hg38 C3N-01261 CCRCC WGS tumor CPT0077490009 991614e1-a4d3-44c4-a18a-dca3a34f009e_gdc_realn.bam 96606566049 BAM harmonized CPTAC3 3bbbdc9f-9468-4fa4-af6e-e2b0d55979e2 9f8d204ac449291404e85e8f7880be99 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.WXS.A C3N-01261 CCRCC WXS tissue_normal CPT0077500009 CPT0077500009.WholeExome.RP-1303.bam 34208387484 BAM submitted_aligned CPTAC3 6e37f58c-ee5b-4980-8e1f-c84cc2bc657b 9f03fd95a46c03d7d2d980937e2b2bd6 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.WXS.A.hg38 C3N-01261 CCRCC WXS tissue_normal CPT0077500009 ff04c8ea-0993-4b3d-9cd1-a2f15a53c12d_wxs_gdc_realn.bam 46447409659 BAM harmonized CPTAC3 c75b2794-04ab-4c1d-bc99-a504429be731 8c807cf57e8df933498ecb938e464dc6 {"aliquot_tag": "ALQ_feb4414d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01261.WXS.N C3N-01261 CCRCC WXS blood_normal CPT0077590002 CPT0077590002.WholeExome.RP-1303.bam 28676506281 BAM submitted_aligned CPTAC3 893d4d99-685e-4bab-935d-9a35519c9a63 b27b123b4595c9fabc9c546f567ffb9e {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01261.WXS.N.hg38 C3N-01261 CCRCC WXS blood_normal CPT0077590002 93bfb3d4-6285-4819-b54b-96c9994f54d4_gdc_realn.bam 38961955036 BAM harmonized CPTAC3 96cc5663-6c2f-44fe-b109-9985a54d138e e9f7010590ac5d53409a60eefd990404 {"aliquot_tag": "ALQ_6476fab4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01261.WXS.T C3N-01261 CCRCC WXS tumor CPT0077490009 CPT0077490009.WholeExome.RP-1303.bam 24649491134 BAM submitted_aligned CPTAC3 6e8fa032-893d-48c5-a833-d4f048d7c4f0 1b781825dedc1822d9629740b7488a52 {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01261.WXS.T.hg38 C3N-01261 CCRCC WXS tumor CPT0077490009 991614e1-a4d3-44c4-a18a-dca3a34f009e_gdc_realn.bam 33798882094 BAM harmonized CPTAC3 d22da425-d65c-412c-a2b2-74ff21d39edc 371f6e75ced50d00c04d826f9e663b6b {"aliquot_tag": "ALQ_38f8f099", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.MethArray.Green.T C3N-01267 UCEC Methylation_Array tumor CPT0027970009 202184900111_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 3c376145-b897-4861-bedd-29f03c3b5c86 8e51c467354f16c2e817e1b55026edca {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.MethArray.Red.T C3N-01267 UCEC Methylation_Array tumor CPT0027970009 202184900111_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 fefbd019-2d64-42d7-bf7e-54124315b34e 8fe61c1b06ef8ddbd0efd1ed0aa1dcbb {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.miRNA-Seq.S25_L004_R1.T C3N-01267 UCEC miRNA-Seq tumor CPT0027970006 181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L004_R1_001.unaln.bam 276187905 BAM S25_L004_R1 submitted_unaligned CPTAC3 046b8172-a254-4b12-a76e-a979560f1662 8a4ecfb1d97d7e302e194ff113ef50d9 {"aliquot_tag": "ALQ_e3094ed3", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.miRNA-Seq.T.hg38 C3N-01267 UCEC miRNA-Seq tumor CPT0027970006 d64b3493-643b-4bad-a009-e8558d048071_mirnaseq_gdc_realn.bam 304888226 BAM harmonized CPTAC3 f87e0dfd-4c84-402d-83a5-894f41d6b47d 509ab95e775da73471fb7ecddc680944 {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.chimeric.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.chimeric.gdc_realn.bam 106655079 BAM chimeric harmonized CPTAC3 02b50d0a-58b3-4303-a5e2-ead3df6f3413 f1439ec369049ac4bb6362a930d3bc51 {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.chimeric.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.chimeric.gdc_realn.bam 164775486 BAM chimeric harmonized CPTAC3 babc1131-d145-40a4-9211-0611d659b518 d5aee35179c2556f2466ec5822bff121 {"aliquot_tag": "ALQ_64ca7521", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.genomic.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.genomic.gdc_realn.bam 11487985131 BAM genomic harmonized CPTAC3 766c37aa-e6eb-482c-80a9-e44f7a7e960d 2d121bf12a0d2f7caa7aabf6234a0241 {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.genomic.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.genomic.gdc_realn.bam 8356262268 BAM genomic harmonized CPTAC3 4d2c5c4b-30ad-4226-8daf-1daa1604800d d9983e626082ce20b90bf8ff96286a72 {"aliquot_tag": "ALQ_64ca7521", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.S18_L005_R1.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 5686283942 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 63431135-a82e-4a29-a17d-70ca5b7def70 b4328b79f0334daaed17db93a1cf3f4e {"aliquot_tag": "ALQ_e3094ed3", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.S18_L005_R2.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 6163184337 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 a09574f4-c3e1-428c-a8a0-412950a3872a e5622f9e9cd5e8669f0a076740b3d3b9 {"aliquot_tag": "ALQ_e3094ed3", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.S35_R1.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R1_001.fastq.gz 4990758725 FASTQ S35_R1 submitted_unaligned CPTAC3 68c9c5e4-b847-4c3d-8660-4616feac2ff6 d7c20600573918b9e0a1290b588f77c0 {"aliquot_tag": "ALQ_64ca7521", "sample": "S35", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.S35_R2.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R2_001.fastq.gz 5205513774 FASTQ S35_R2 submitted_unaligned CPTAC3 b90475eb-62a2-4be4-a31e-989bf1810c20 4dd8c725787542652708c1380b1749a5 {"aliquot_tag": "ALQ_64ca7521", "sample": "S35", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.transcriptome.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.transcriptome.gdc_realn.bam 14988924488 BAM transcriptome harmonized CPTAC3 0400c3d0-d6e3-4cf5-9087-7909a2a9a212 e568cf1b6fd19f83f98c939cb28c728f {"aliquot_tag": "ALQ_e3094ed3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.RNA-Seq.transcriptome.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.transcriptome.gdc_realn.bam 4535225100 BAM transcriptome harmonized CPTAC3 6e68ebe3-31bf-48fb-9922-ceed7fc8ac6b 50d8894595a60aecb416d763cd323e68 {"aliquot_tag": "ALQ_64ca7521", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.WGS.N C3N-01267 UCEC WGS blood_normal CPT0028110002 CPT0028110002.WholeGenome.RP-1303.bam 69583043979 BAM submitted_aligned CPTAC3 1db5b9d3-67d6-4d6f-97e1-960036e545b7 12eb429e996cb17b3e2d1b7a755850d8 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01267.WGS.N.hg38 C3N-01267 UCEC WGS blood_normal CPT0028110002 ef8eadff-62be-4e36-a2d3-9d4a618b2ff2_gdc_realn.bam 101592864336 BAM harmonized CPTAC3 a532762d-a05a-4be3-911a-21a9c44c1c5c d4090c8a94f54e63a087761ed27650d7 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01267.WGS.T C3N-01267 UCEC WGS tumor CPT0027970009 CPT0027970009.WholeGenome.RP-1303.bam 67074734263 BAM submitted_aligned CPTAC3 a8ebd5ad-5140-4171-8005-4d4629b4313d bd9bbc4b907047346c73bfb6c63bcf34 {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.WGS.T.hg38 C3N-01267 UCEC WGS tumor CPT0027970009 441ce217-806a-46cc-84fd-6391b0ba2d82_gdc_realn.bam 98922759749 BAM harmonized CPTAC3 6a16e63f-e0cb-4ff2-bc69-f077232f3b2c 416e4dc76e312304da3d0ca57759fdae {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.WXS.N C3N-01267 UCEC WXS blood_normal CPT0028110002 CPT0028110002.WholeExome.RP-1303.bam 25329097293 BAM submitted_aligned CPTAC3 a34f5976-b993-4ecf-b10e-b087dc50dfd7 636cb37095abb7b861609a45d831e796 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01267.WXS.N.hg38 C3N-01267 UCEC WXS blood_normal CPT0028110002 ef8eadff-62be-4e36-a2d3-9d4a618b2ff2_gdc_realn.bam 34314132823 BAM harmonized CPTAC3 1042e2b7-3bc3-4b8d-8437-bd7bfdf5d5d4 69e206e9500a265b909075df9e2e2256 {"aliquot_tag": "ALQ_713f8dee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01267.WXS.T C3N-01267 UCEC WXS tumor CPT0027970009 CPT0027970009.WholeExome.RP-1303.bam 32443133408 BAM submitted_aligned CPTAC3 1a29b2c3-51e2-409e-8e3d-d6ac729b1873 541af6cf9e23e036ece375d7b28a1bde {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01267.WXS.T.hg38 C3N-01267 UCEC WXS tumor CPT0027970009 441ce217-806a-46cc-84fd-6391b0ba2d82_gdc_realn.bam 43958692897 BAM harmonized CPTAC3 fc5809c5-56de-45d7-8805-0ef944f75972 45b1bb4ef7b7e5768b880aaeb1241250 {"aliquot_tag": "ALQ_73b65342", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01270.MethArray.Green.T C3N-01270 CCRCC Methylation_Array tumor CPT0379980009 205555380179_R04C01_Grn.idat 13677960 IDAT Green NA CPTAC3 ca8a26de-224b-4ae3-9a46-d7096ee4ac9a 29b79ebdcb8d01eaab1021b2a2df7caf {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.MethArray.Red.T C3N-01270 CCRCC Methylation_Array tumor CPT0379980009 205555380179_R04C01_Red.idat 13677960 IDAT Red NA CPTAC3 6c1aed5a-8f7e-4c76-9f89-2bb3aa98caaa ddef2b60613f978b033f3c0a1cd38bd2 {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.miRNA-Seq.S47_L003_R1.T C3N-01270 CCRCC miRNA-Seq tumor CPT0379980006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TGACCA_S47_L003_R1_001.unaln.bam 296899051 BAM S47_L003_R1 submitted_unaligned CPTAC3 3a4c35aa-b291-4dc0-9dae-490fa66ba448 d645a43d86e36a3214cfd02047451184 {"aliquot_tag": "ALQ_400b90fe", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.miRNA-Seq.T.hg38 C3N-01270 CCRCC miRNA-Seq tumor CPT0379980006 09c29468-8198-4938-9528-84e42671821c_mirnaseq_gdc_realn.bam 317659746 BAM harmonized CPTAC3 202ca8c5-4688-4a1f-88c8-a31b946880c2 516652ad598203a3286aca5ccb6cb356 {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.RNA-Seq.chimeric.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.chimeric.gdc_realn.bam 84546035 BAM chimeric harmonized CPTAC3 75dbf0f4-5a54-4810-90fd-6f14231cbf35 5fe7708e824fb31c68a8d3ae1442510f {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.RNA-Seq.genomic.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.genomic.gdc_realn.bam 8588571908 BAM genomic harmonized CPTAC3 f5e8c458-8837-48c4-9562-9c521ce9e9d0 48495ad2037b48e3848c717c4a0f333d {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.RNA-Seq.S29_L008_R1.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 4022165445 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 0898addb-d937-47ec-a08c-254a9b47aac1 3ef09fe088d58613b521a590d996a9c3 {"aliquot_tag": "ALQ_400b90fe", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.RNA-Seq.S29_L008_R2.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 4643494347 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 daca7c43-c7a1-490b-a280-1fa6dae51b2e 5b18e29be0dd5c3f2d23c32d6367c7ab {"aliquot_tag": "ALQ_400b90fe", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.RNA-Seq.transcriptome.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.transcriptome.gdc_realn.bam 10362064235 BAM transcriptome harmonized CPTAC3 d1b4b2cd-4c9d-4778-9777-b82e57dfe90a b42041bf0cbc6fa422d62a5265a88d94 {"aliquot_tag": "ALQ_400b90fe", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.scRNA-Seq.S1_L002_R1.T C3N-01270 CCRCC scRNA-Seq tumor CPT0379980004 20220127_WUSTL_TWFU-CPT0379980004-Y1N1Z1_1Bn1_1_TCCGGGACAA+GTGAATGCCA_S1_L002_R1_001.fastq.gz 4608609131 FASTQ S1_L002_R1 submitted_unaligned CPTAC3 de277094-9027-46dc-b4f8-0c935f517427 dbe5a86ba6a176c1fa475d4ba536c698 {"aliquot_tag": "ALQ_ae05f1d2", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.scRNA-Seq.S1_L002_R2.T C3N-01270 CCRCC scRNA-Seq tumor CPT0379980004 20220127_WUSTL_TWFU-CPT0379980004-Y1N1Z1_1Bn1_1_TCCGGGACAA+GTGAATGCCA_S1_L002_R2_001.fastq.gz 16230272129 FASTQ S1_L002_R2 submitted_unaligned CPTAC3 c4c1da37-4642-4601-88f7-45528d058db5 c09633ed95e48f203e1d920fc76a06af {"aliquot_tag": "ALQ_ae05f1d2", "sample": "S1", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.WGS.N C3N-01270 CCRCC WGS blood_normal CPT0380060002 CPT0380060002.WholeGenome.RP-2158.bam 23683580215 BAM submitted_aligned CPTAC3 9326b369-e74e-48a7-8c40-cf479097394f f0c95aae9082650ec6cd91b4ebc44605 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01270.WGS.N.hg38 C3N-01270 CCRCC WGS blood_normal CPT0380060002 a28bbf6b-2874-4a64-b595-677c311757ec_wgs_gdc_realn.bam 72517616586 BAM harmonized CPTAC3 22bc60dc-186d-4097-bd75-e17b16c2f828 a8b363391d2fe11bc2b4f3b23b9c8091 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01270.WGS.T C3N-01270 CCRCC WGS tumor CPT0379980009 CPT0379980009.WholeGenome.RP-2158.bam 34128078847 BAM submitted_aligned CPTAC3 ba70be97-27d2-4442-b1e5-02f7072934e3 762c2abc06bd786eda98440fa382b119 {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.WGS.T.hg38 C3N-01270 CCRCC WGS tumor CPT0379980009 3e9dc217-f4cf-44f0-ac2c-e354ab41a3e4_wgs_gdc_realn.bam 104013512562 BAM harmonized CPTAC3 79848237-2bc5-4312-bff2-8fb2e28b01d7 f43387e19cf5bb0700bb9ba17e0b9091 {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.WXS.N C3N-01270 CCRCC WXS blood_normal CPT0380060002 CPT0380060002.WholeExome.RP-1303.bam 30951279448 BAM submitted_aligned CPTAC3 91243102-ba8e-445a-87db-88ca9ed556a0 4614559de2562685fcdf3b084063f796 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01270.WXS.N.hg38 C3N-01270 CCRCC WXS blood_normal CPT0380060002 a28bbf6b-2874-4a64-b595-677c311757ec_wxs_gdc_realn.bam 42384785619 BAM harmonized CPTAC3 25d9db2e-f25a-461b-856d-8dacaf8b17f5 4d77711457900cf38331accd44f93c19 {"aliquot_tag": "ALQ_93e1ec31", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01270.WXS.T C3N-01270 CCRCC WXS tumor CPT0379980009 CPT0379980009.WholeExome.RP-1303.bam 19764992099 BAM submitted_aligned CPTAC3 9ed94481-a4b5-450b-9342-00131230b45d dd898e2cbc859a539661f568784470aa {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01270.WXS.T.hg38 C3N-01270 CCRCC WXS tumor CPT0379980009 3e9dc217-f4cf-44f0-ac2c-e354ab41a3e4_wxs_gdc_realn.bam 27327520297 BAM harmonized CPTAC3 56ab4459-26fa-40a6-b7a1-d27e782d4e88 8407972359c7b5f39cc664cb6c5e238d {"aliquot_tag": "ALQ_d0b48d6f", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01334.MethArray.Green.T C3N-01334 GBM Methylation_Array tumor CPT0125220006 203027390113_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b5b25ff8-f307-4d31-a85e-59dae5f22b60 ad0bf9bbfc8396e978a0f5aff290bff7 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.MethArray.Red.T C3N-01334 GBM Methylation_Array tumor CPT0125220006 203027390113_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 d97ecf6e-6506-4e2f-81a7-90d0df50bd64 f95ffdf05cc7d399fbfe13a5c42f1280 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.miRNA-Seq.S7_L001_R1.T C3N-01334 GBM miRNA-Seq tumor CPT0125220009 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 250135148 BAM S7_L001_R1 submitted_unaligned CPTAC3 81dc77c5-3629-4def-a2d6-b0df52ae1362 a63683b5b419fb7151f3b5da6982b112 {"aliquot_tag": "ALQ_5175299b", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.miRNA-Seq.T.hg38 C3N-01334 GBM miRNA-Seq tumor CPT0125220009 a13249af-193b-4239-9751-91a6c60b8dfd_mirnaseq_gdc_realn.bam 275759979 BAM harmonized CPTAC3 6a099608-bb61-421e-b952-3e8ed83d064d 5a26a65f9d4122ad3aa1cfc49d1d420b {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.RNA-Seq.chimeric.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.chimeric.gdc_realn.bam 128567152 BAM chimeric harmonized CPTAC3 c19f5d92-751c-4949-b729-e6b6ff4aa581 cbb0153e86bb24f7bd9182a16eaee89e {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.RNA-Seq.genomic.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.genomic.gdc_realn.bam 8680737484 BAM genomic harmonized CPTAC3 e883d26e-53a8-4459-94ce-4cc678216cf3 be11863e9a2b542cd8953e88a4d7eda7 {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.RNA-Seq.S8_L007_R1.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R1_001.fastq.gz 3964104440 FASTQ S8_L007_R1 submitted_unaligned CPTAC3 3cc957f8-1cd0-4197-96b8-30bd1a5cc776 85c17b002082377d2c99cc1d6e962e04 {"aliquot_tag": "ALQ_5175299b", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.RNA-Seq.S8_L007_R2.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R2_001.fastq.gz 4396759449 FASTQ S8_L007_R2 submitted_unaligned CPTAC3 a6823ef4-4fb2-4188-8214-4de92ce913a2 baccb61de188456f5868f6a6ea2a68fb {"aliquot_tag": "ALQ_5175299b", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.RNA-Seq.transcriptome.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.transcriptome.gdc_realn.bam 9235189524 BAM transcriptome harmonized CPTAC3 359a248b-c888-4dfc-bbb0-f3da1a1c2834 3df2906ecfc7e9d712e4cd3183ab72ba {"aliquot_tag": "ALQ_5175299b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.scRNA-Seq.S3_L001_R1.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R1_001.fastq.gz 9509432240 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 9c645991-b038-4ee7-9388-61b31e0f800b 61ffdb1fc8c97c668fddacdc441b119c {"aliquot_tag": "ALQ_2fc45526", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.scRNA-Seq.S3_L001_R2.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R2_001.fastq.gz 22676722596 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 444e55b6-4c1c-437e-b097-1f6fe70ce245 7759b9bd6edca8c6e5eefc01bfca73ac {"aliquot_tag": "ALQ_2fc45526", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.scRNA-Seq.T.hg38 C3N-01334 GBM scRNA-Seq tumor CPT0125220004 possorted_genome_bam.bam 25480646057 BAM harmonized CPTAC3 c2689d4e-8fb5-406d-9a9c-d379d950037f bca03b32d20bb26aaceebdbf37ee5959 {"aliquot_tag": "ALQ_2fc45526", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.WGS.N C3N-01334 GBM WGS blood_normal CPT0125250002 CPT0125250002.WholeGenome.RP-1303.bam 62961118881 BAM submitted_aligned CPTAC3 998a823c-24d7-41ec-865a-62c9ee65a71b 508d106bef15c7131942375e690581f4 {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01334.WGS.N.hg38 C3N-01334 GBM WGS blood_normal CPT0125250002 1f02adc4-0b20-4fd3-ad08-5d4c6b3b4b18_wgs_gdc_realn.bam 90333471413 BAM harmonized CPTAC3 5980d118-12c4-440c-ba3d-3edfa259658a 0861cc27aa030704e8e9f2f7896aa8bb {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01334.WGS.T C3N-01334 GBM WGS tumor CPT0125220006 CPT0125220006.WholeGenome.RP-1303.bam 62455774887 BAM submitted_aligned CPTAC3 655943fb-8990-4690-8bd0-1586f06b911e 415f953131f169bdfc70c6554a0aa234 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.WGS.T.hg38 C3N-01334 GBM WGS tumor CPT0125220006 db1b4053-ac2a-4da7-b360-488978fbf6c4_wgs_gdc_realn.bam 92894519288 BAM harmonized CPTAC3 d674d610-4fa5-4838-a145-4f60c956c43d 12f8364e9b4ddbad5c3474bbd9e8fded {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.WXS.N C3N-01334 GBM WXS blood_normal CPT0125250002 CPT0125250002.WholeExome.RP-1303.bam 26822439471 BAM submitted_aligned CPTAC3 7dfcb865-a511-4589-8533-c8bc5d788102 bdcd79363c8ebb023e91920b30188743 {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01334.WXS.N.hg38 C3N-01334 GBM WXS blood_normal CPT0125250002 1f02adc4-0b20-4fd3-ad08-5d4c6b3b4b18_wxs_gdc_realn.bam 36108215795 BAM harmonized CPTAC3 b1233ee5-09c1-4070-9e7d-7aa51c315b44 d460ef0d3555b028f73591f72b118844 {"aliquot_tag": "ALQ_74872c03", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01334.WXS.T C3N-01334 GBM WXS tumor CPT0125220006 CPT0125220006.WholeExome.RP-1303.bam 36570438445 BAM submitted_aligned CPTAC3 8b77dd43-97e5-409a-bd45-72c30fba641e 5144a7dc4441e1d236f16ed834b93f96 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01334.WXS.T.hg38 C3N-01334 GBM WXS tumor CPT0125220006 db1b4053-ac2a-4da7-b360-488978fbf6c4_wxs_gdc_realn.bam 48687341321 BAM harmonized CPTAC3 4e608d9a-e784-407e-9a35-e6af8267613d 7db8777d1e15b7b677ef518e4d0563f6 {"aliquot_tag": "ALQ_c1ca340a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.MethArray.Green.T C3N-01337 HNSCC Methylation_Array tumor CPT0087990009 202234380051_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f929cc6a-fb6a-42f0-a101-ef1bbd3290a4 c2bc5e3e02fa4b0f1d77c8b27e6c702d {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.MethArray.Red.T C3N-01337 HNSCC Methylation_Array tumor CPT0087990009 202234380051_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 2baa9988-eda8-41ae-b86b-3626bf12982b 6cc75c34ec4a07ba3353ff4f73d9bf77 {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.miRNA-Seq.A.hg38 C3N-01337 HNSCC miRNA-Seq tissue_normal CPT0088010009 be8892cc-6283-4f31-a7a8-2382eba4b665_mirnaseq_gdc_realn.bam 233109023 BAM harmonized CPTAC3 400ee73c-583e-4683-9992-d5c151380ba2 a51183a97b629ead3768db7733176b18 {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.miRNA-Seq.S18_L006_R1.T C3N-01337 HNSCC miRNA-Seq tumor CPT0087990006 180828_UNC32-K00270_0112_AHWTLNBBXX_GCCAAT_S18_L006_R1_001.unaln.bam 198006398 BAM S18_L006_R1 submitted_unaligned CPTAC3 83985eb3-217f-45ac-b873-7c39b399874a dbe06a76e9d9a591600bbc2d84020aba {"aliquot_tag": "ALQ_cdf9ec7a", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.miRNA-Seq.S20_L005_R1.A C3N-01337 HNSCC miRNA-Seq tissue_normal CPT0088010009 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L005_R1_001.unaln.bam 210197153 BAM S20_L005_R1 submitted_unaligned CPTAC3 69f193d5-8ed4-43cc-a6ab-6493d0a69219 b89fc5470a41aecd9e9a1701694bd028 {"aliquot_tag": "ALQ_bc719b0b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.miRNA-Seq.T.hg38 C3N-01337 HNSCC miRNA-Seq tumor CPT0087990006 ad252f93-ea73-4060-ac55-3e373fecb9d2_mirnaseq_gdc_realn.bam 222355118 BAM harmonized CPTAC3 17713a9f-caa1-4f51-9dad-952106b04cf1 9426cd24732bac6a8e6e5cccb37738cb {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.chimeric.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.chimeric.gdc_realn.bam 12985563 BAM chimeric harmonized CPTAC3 f9f8dd90-26cf-4e3e-a7ae-8126446ab182 43d6f697a76c6b0fb4033d697859954d {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.RNA-Seq.chimeric.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.chimeric.gdc_realn.bam 40058562 BAM chimeric harmonized CPTAC3 329758c5-e4b7-4bd9-9065-056b3a9aa0c4 04b1ea177fd1acfe715de1de2e411a1e {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.chimeric.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.chimeric.gdc_realn.bam 138003437 BAM chimeric harmonized CPTAC3 9ba58794-4aae-4357-94df-6f6eb03f4036 d2f0d2749a404dc38179f9df59ca9503 {"aliquot_tag": "ALQ_1a1efe51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.genomic.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.genomic.gdc_realn.bam 6424919842 BAM genomic harmonized CPTAC3 01fa620a-d5fa-4348-a95a-2d0007137307 2f3a191a2dcfaf25d4456efdb38a8c2c {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.RNA-Seq.genomic.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.genomic.gdc_realn.bam 11651430543 BAM genomic harmonized CPTAC3 ddcfb06f-f917-4fb6-8aff-969e085948dd f1ee10861f01c96d5a7391d88d239c10 {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.genomic.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.genomic.gdc_realn.bam 10689253959 BAM genomic harmonized CPTAC3 b10c7480-89c9-4859-a6bf-f5be06896fdb 6f8cdfb3e1b48e0d08848a17f20ee59a {"aliquot_tag": "ALQ_1a1efe51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.S19_L005_R1.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 2503193362 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9 f14e7cfcb3694b6498962a0070984e27 {"aliquot_tag": "ALQ_bc719b0b", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.RNA-Seq.S19_L005_R2.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 2776505428 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 63d27db0-605c-48d9-9e25-5c93879a73cc 7971c960d46d4e23e8472aa0d137cb13 {"aliquot_tag": "ALQ_bc719b0b", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.RNA-Seq.S2_L001_R1.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4788972008 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 ea84dfa7-362e-41bd-af0a-9183260cee41 f8138408ce5cd65457f0a4ea0fa76076 {"aliquot_tag": "ALQ_cdf9ec7a", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.S2_L001_R2.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 5466397642 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 b59c44a2-261e-4035-a6a9-deb3160eadea 4ef30c903204fbf3fa8c3ca237004bd0 {"aliquot_tag": "ALQ_cdf9ec7a", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.S49_R1.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R1_001.fastq.gz 5846796128 FASTQ S49_R1 submitted_unaligned CPTAC3 20270207-1151-4641-b428-6b42171dd34b 490971bbd77c3163e69058564beb1131 {"aliquot_tag": "ALQ_1a1efe51", "sample": "S49", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.S49_R2.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R2_001.fastq.gz 5999541002 FASTQ S49_R2 submitted_unaligned CPTAC3 e84584b3-002c-4a60-8394-5c2036b94697 30c3adc61e3a5359efdc748c537d09e4 {"aliquot_tag": "ALQ_1a1efe51", "sample": "S49", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.transcriptome.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.transcriptome.gdc_realn.bam 8768088070 BAM transcriptome harmonized CPTAC3 a24b9a00-fd76-49cc-9c9d-cc82e176c733 3f9edf7080f9e1f9588c0df38542156c {"aliquot_tag": "ALQ_bc719b0b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.RNA-Seq.transcriptome.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.transcriptome.gdc_realn.bam 13133808698 BAM transcriptome harmonized CPTAC3 b5affe34-1688-461d-93a3-7d3867f8d2c2 4d7953abed9c3db9dd108cc8f3b30b97 {"aliquot_tag": "ALQ_cdf9ec7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.RNA-Seq.transcriptome.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.transcriptome.gdc_realn.bam 7602069093 BAM transcriptome harmonized CPTAC3 d3004a74-fdc4-49b7-baa3-6293d8663dde 8e5e4321b35815f109fba5ea48320f9e {"aliquot_tag": "ALQ_1a1efe51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.WGS.A C3N-01337 HNSCC WGS tissue_normal CPT0088010006 CPT0088010006.WholeGenome.RP-1303.bam 58905868115 BAM submitted_aligned CPTAC3 8567a66c-7b60-4ca4-9093-80ffe0e8366e 8d9a42e992a762a0b2b33a587edfd57f {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.WGS.A.hg38 C3N-01337 HNSCC WGS tissue_normal CPT0088010006 ccd05ad6-d909-4da7-8f5f-5326e0a6db42_wgs_gdc_realn.bam 85357987865 BAM harmonized CPTAC3 7232386e-c114-4ca2-ba4c-3a102becbb45 1311701ad03fe0ca19ea88bc64ac04fa {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.WGS.N C3N-01337 HNSCC WGS blood_normal CPT0088050002 CPT0088050002.WholeGenome.RP-1303.bam 59064767532 BAM submitted_aligned CPTAC3 1ae3d429-c5d9-49c7-bd77-05ee45a670f4 190961d9e81ed5e0f367246f68697971 {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01337.WGS.N.hg38 C3N-01337 HNSCC WGS blood_normal CPT0088050002 ff8d9b73-dfdd-4de7-b9e4-96176aa60f7d_wgs_gdc_realn.bam 87234854570 BAM harmonized CPTAC3 60c95aca-9e6b-45a5-9e5a-78d183ec859a c0172236ff009c651c7cf4a981021f1b {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01337.WGS.T C3N-01337 HNSCC WGS tumor CPT0087990009 CPT0087990009.WholeGenome.RP-1303.bam 68965730148 BAM submitted_aligned CPTAC3 a98723dd-9eba-4400-9147-b9ec4c277656 3b7add82b36923906a8f9692e2442113 {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.WGS.T.hg38 C3N-01337 HNSCC WGS tumor CPT0087990009 2da6fefd-4842-47be-9503-e87c867fb1dc_wgs_gdc_realn.bam 100634389854 BAM harmonized CPTAC3 f923d70c-5ce2-47a0-8839-dcacb1ebe529 b9ed16b3880b2e515f5735676f9e2aaa {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.WXS.A C3N-01337 HNSCC WXS tissue_normal CPT0088010006 CPT0088010006.WholeExome.RP-1303.bam 20757029708 BAM submitted_aligned CPTAC3 56365fa1-ffb8-414c-b8e4-ce84e850ab9a 2f4f172775ac0911a2ac1b582d2bd58e {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.WXS.A.hg38 C3N-01337 HNSCC WXS tissue_normal CPT0088010006 ccd05ad6-d909-4da7-8f5f-5326e0a6db42_wxs_gdc_realn.bam 28055438926 BAM harmonized CPTAC3 285066e5-4a9d-416d-b8c0-6c39a2b4381f 8d21a559892efc165acbc7af05f17eea {"aliquot_tag": "ALQ_2cce869a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01337.WXS.N C3N-01337 HNSCC WXS blood_normal CPT0088050002 CPT0088050002.WholeExome.RP-1303.bam 37601726782 BAM submitted_aligned CPTAC3 33cafe0e-7144-4102-8815-dc1fe93dc65b 2cb036b492b74e815a419f7df8df1fe1 {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01337.WXS.N.hg38 C3N-01337 HNSCC WXS blood_normal CPT0088050002 ff8d9b73-dfdd-4de7-b9e4-96176aa60f7d_wxs_gdc_realn.bam 50278234545 BAM harmonized CPTAC3 4906c7e4-36d8-48d7-89ca-3c3f1fd7de40 087f729ecae3f35a48f555e6ab579fd7 {"aliquot_tag": "ALQ_de23e443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01337.WXS.T C3N-01337 HNSCC WXS tumor CPT0087990009 CPT0087990009.WholeExome.RP-1303.bam 38225467439 BAM submitted_aligned CPTAC3 5d84fba9-a45c-48a6-9a86-ffc5196ff65a dea21bf229f822e8e51de839e565bf52 {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01337.WXS.T.hg38 C3N-01337 HNSCC WXS tumor CPT0087990009 2da6fefd-4842-47be-9503-e87c867fb1dc_wxs_gdc_realn.bam 51820212804 BAM harmonized CPTAC3 7fc4285a-ecc0-43c5-b8d2-bc533f1c0249 1db81aa41101dd7ab43473ee28d55c6b {"aliquot_tag": "ALQ_5d46f1eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.MethArray.Green.T C3N-01338 HNSCC Methylation_Array tumor CPT0088060010 202234360029_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 5d2818f4-03f1-4a28-8214-05eb7a1bbe26 2db8e7c7a2c82d2350c0c84a30e5e7ff {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.MethArray.Red.T C3N-01338 HNSCC Methylation_Array tumor CPT0088060010 202234360029_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 fa004ddb-0153-4683-a5fe-112bb6523e03 875e7cfef5ff445ea868cc32e4b1fbbe {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.miRNA-Seq.A.hg38 C3N-01338 HNSCC miRNA-Seq tissue_normal CPT0088080009 96fe06b5-afa7-44ef-97a1-da4d59f9b53d_mirnaseq_gdc_realn.bam 214961287 BAM harmonized CPTAC3 22c2e47a-0431-4009-b549-696932f5aa3e e5c90314857073641943f5766a9156df {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.miRNA-Seq.S26_L008_R1.T C3N-01338 HNSCC miRNA-Seq tumor CPT0088060007 180724_UNC32-K00270_0106_BHWK3MBBXX_GGTAGC_S26_L008_R1_001.unaln.bam 201786751 BAM S26_L008_R1 submitted_unaligned CPTAC3 cf700d07-62d4-497c-a579-f52183ae7dde 25bc9e57670884b72a1148ddb2498924 {"aliquot_tag": "ALQ_e9e96a1c", "sample": "S26", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.miRNA-Seq.S3_L001_R1.A C3N-01338 HNSCC miRNA-Seq tissue_normal CPT0088080009 181119_UNC31-K00269_0165_AH27WCBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 196221651 BAM S3_L001_R1 submitted_unaligned CPTAC3 d2642e27-0a90-46d1-8c0c-e987fee2e53b 04bad105059211322e0c7291eff42f39 {"aliquot_tag": "ALQ_b161f97a", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.miRNA-Seq.T.hg38 C3N-01338 HNSCC miRNA-Seq tumor CPT0088060007 2df227c0-96a8-4290-b869-9be58841c11f_mirnaseq_gdc_realn.bam 218161018 BAM harmonized CPTAC3 3a279538-ee20-45bd-aee4-02fa96a87a19 e3130ff812fdb64dc8f0d145748fbf61 {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.RNA-Seq.chimeric.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.chimeric.gdc_realn.bam 21862816 BAM chimeric harmonized CPTAC3 50344f6d-0e19-4806-983a-27622e6551d6 148876841519b4c29a256e713df65f75 {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.RNA-Seq.chimeric.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.chimeric.gdc_realn.bam 38894202 BAM chimeric harmonized CPTAC3 f4ab1fa1-55d2-482d-b5cc-b1ff2c3a4745 3ac68d5d7183b7a32f2e2ff8b9fb2f7b {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.RNA-Seq.genomic.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.genomic.gdc_realn.bam 8511166047 BAM genomic harmonized CPTAC3 f83d474d-300a-41ef-bb11-3c68557790c2 bc5ad5fee8bf434d998742920522f990 {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.RNA-Seq.genomic.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.genomic.gdc_realn.bam 9098282641 BAM genomic harmonized CPTAC3 da33fb81-312c-4fbd-9757-575a3e3927d9 5ce32604a9c0437624ae5a0d87124c12 {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.RNA-Seq.S17_L005_R1.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R1_001.fastq.gz 3862068086 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 bc9c20c8-2b66-43f9-9af9-2e2a3ab09b66 24a2117d80fa957858f2b01e66b64177 {"aliquot_tag": "ALQ_b161f97a", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.RNA-Seq.S17_L005_R2.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4195077773 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 07c5cb0b-e1c0-4fd9-bb00-2819c4c2c5e0 cfd2029fca5a0f32a0b233130d51bd7b {"aliquot_tag": "ALQ_b161f97a", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.RNA-Seq.S23_L008_R1.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R1_001.fastq.gz 4023050359 FASTQ S23_L008_R1 submitted_unaligned CPTAC3 5470e81f-8fc5-4e01-9c5d-41689344e47a 5cb345f5d9a2a66eb9bdb243d54cdc93 {"aliquot_tag": "ALQ_e9e96a1c", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.RNA-Seq.S23_L008_R2.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R2_001.fastq.gz 4490986247 FASTQ S23_L008_R2 submitted_unaligned CPTAC3 45bee5df-929e-442e-bbe8-2e2896674e63 6f80c879add3c41b55aebc5e06b921a4 {"aliquot_tag": "ALQ_e9e96a1c", "sample": "S23", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.RNA-Seq.transcriptome.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.transcriptome.gdc_realn.bam 12783838936 BAM transcriptome harmonized CPTAC3 2d877a80-9285-4aad-b07e-4b13f6149fa1 f892ac1688a69ee5859c30f6bc7564eb {"aliquot_tag": "ALQ_b161f97a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.RNA-Seq.transcriptome.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.transcriptome.gdc_realn.bam 12287465284 BAM transcriptome harmonized CPTAC3 cbeb6fe4-616c-41b4-80fd-750576e0b1d5 a3ac8722df28fd43e4801d35ecc3d405 {"aliquot_tag": "ALQ_e9e96a1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.WGS.N C3N-01338 HNSCC WGS blood_normal CPT0088120002 CPT0088120002.WholeGenome.RP-1303.bam 85666598601 BAM submitted_aligned CPTAC3 b82fceaa-3807-4c23-a3ce-a7ee3cdc75ee 88f0522bcfc7007543f64c8e0f9227f1 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01338.WGS.N.hg38 C3N-01338 HNSCC WGS blood_normal CPT0088120002 395d904f-e1a8-4082-a6ff-cf63330a8d73_wgs_gdc_realn.bam 129181623799 BAM harmonized CPTAC3 9ada4774-c194-4831-9625-6a7aa60ec016 00e1e0a1ab126e1a778e0cb45de8c6a9 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01338.WGS.T C3N-01338 HNSCC WGS tumor CPT0088060010 CPT0088060010.WholeGenome.RP-1303.bam 61735475309 BAM submitted_aligned CPTAC3 0f9f01bc-1fd9-4404-82c9-06ed811a52f0 f6a14b0e3cbb645c3dacbe92fc5d74b7 {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.WGS.T.hg38 C3N-01338 HNSCC WGS tumor CPT0088060010 a0efd61b-a82a-49cc-911d-96c7f04ed245_wgs_gdc_realn.bam 92847757345 BAM harmonized CPTAC3 496b7c36-e667-4bf7-a8be-2772c170794f 02d98a12cf26e2f34edd84f76b0df4a3 {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.WXS.A C3N-01338 HNSCC WXS tissue_normal CPT0088080006 CPT0088080006.WholeExome.RP-1303.bam 27186659581 BAM submitted_aligned CPTAC3 caffb49f-a004-4e36-bad5-c4346a752ea5 0181c4ef233b91e37b3f1ec46df55098 {"aliquot_tag": "ALQ_21dee4eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.WXS.A.hg38 C3N-01338 HNSCC WXS tissue_normal CPT0088080006 d9e17e57-04e5-4ab3-963f-e6a934418cfe_wxs_gdc_realn.bam 37085451941 BAM harmonized CPTAC3 9f1f5e35-f51f-46fb-b18f-1759a76196ce 1ce9932fe92e8d281af43fa9a4b2624f {"aliquot_tag": "ALQ_21dee4eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01338.WXS.N C3N-01338 HNSCC WXS blood_normal CPT0088120002 CPT0088120002.WholeExome.RP-1303.bam 32075900078 BAM submitted_aligned CPTAC3 3a7449d6-81dc-4ada-b560-73d2b78d70c0 d1f3de50298c8eb98b40fd277d2e65d4 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01338.WXS.N.hg38 C3N-01338 HNSCC WXS blood_normal CPT0088120002 395d904f-e1a8-4082-a6ff-cf63330a8d73_wxs_gdc_realn.bam 42752658709 BAM harmonized CPTAC3 b8359174-54fe-4706-b274-dbb4216fb2ef f89bea5e493757f5e7ccb50d7f7cf986 {"aliquot_tag": "ALQ_a75febf6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01338.WXS.T C3N-01338 HNSCC WXS tumor CPT0088060010 CPT0088060010.WholeExome.RP-1303.bam 31760815544 BAM submitted_aligned CPTAC3 a203c334-5a41-42c9-b1a7-0ed61922ff13 61b9742f675a3bca592df50f514a075e {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01338.WXS.T.hg38 C3N-01338 HNSCC WXS tumor CPT0088060010 a0efd61b-a82a-49cc-911d-96c7f04ed245_wxs_gdc_realn.bam 43822875946 BAM harmonized CPTAC3 e51cad87-dc80-489a-a3c8-697fbc2016ad 7174273c5f3fe5fbda94186206565438 {"aliquot_tag": "ALQ_6e96cefe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.MethArray.Green.T C3N-01339 HNSCC Methylation_Array tumor CPT0094490010 202234370095_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 466c649f-47e9-412c-8c7f-d769210fd479 2fd41e0bcd58bf2904fc2b0c33c5acf4 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.MethArray.Red.T C3N-01339 HNSCC Methylation_Array tumor CPT0094490010 202234370095_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 04f73d11-8e00-4f25-a5c2-5194d20224ab 303fbbd9f38518844ee43aed922f9c72 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.miRNA-Seq.S46_L007_R1.T C3N-01339 HNSCC miRNA-Seq tumor CPT0094490007 180828_UNC32-K00270_0112_AHWTLNBBXX_CTCAGA_S46_L007_R1_001.unaln.bam 214310804 BAM S46_L007_R1 submitted_unaligned CPTAC3 004bce29-28f2-40d7-aa25-0da3ffdb9037 7ca5075fec107a26a7d30538a7522857 {"aliquot_tag": "ALQ_fb22d531", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.miRNA-Seq.T.hg38 C3N-01339 HNSCC miRNA-Seq tumor CPT0094490007 73c5b03a-8449-445e-a74a-a28a3a4679e7_mirnaseq_gdc_realn.bam 242075044 BAM harmonized CPTAC3 c7bd1260-a615-424c-be99-6658fab2a0f1 3f5cad72aac996fafc27edf4e59c451f {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.RNA-Seq.chimeric.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.chimeric.gdc_realn.bam 47034486 BAM chimeric harmonized CPTAC3 80e3a76b-f7bd-4c82-a776-fa3f886ead13 c37d2e91c4bcb8e5216f5a2547afc28b {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.RNA-Seq.genomic.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.genomic.gdc_realn.bam 9534159671 BAM genomic harmonized CPTAC3 247989f8-45fc-4838-ac2a-73cb68b27c9c 410f41d8aeb07ec92b237ab5a0dbcb24 {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.RNA-Seq.S4_L001_R1.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R1_001.fastq.gz 4660955404 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 d4987b3c-be5d-487a-9e52-74ea45ad64db 902d9245f4d6b3c0baa035b80116abfa {"aliquot_tag": "ALQ_fb22d531", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.RNA-Seq.S4_L001_R2.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R2_001.fastq.gz 4700114368 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 9390e81d-ac41-4618-b97c-d69633ef5669 b9e0a4e0b80847fba0074d02f313cc2a {"aliquot_tag": "ALQ_fb22d531", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.RNA-Seq.transcriptome.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.transcriptome.gdc_realn.bam 9838748810 BAM transcriptome harmonized CPTAC3 152dfbbc-4d45-4f36-bc80-55d45ec8c84e 6e8e3090e71e22a8fc7b3a244deb1308 {"aliquot_tag": "ALQ_fb22d531", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.WGS.N C3N-01339 HNSCC WGS blood_normal CPT0094550002 CPT0094550002.WholeGenome.RP-1303.bam 62208177802 BAM submitted_aligned CPTAC3 0530dcad-861d-4494-8eba-a086a9dda0e0 8585336c161d09a8e810651f646fbeb8 {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01339.WGS.N.hg38 C3N-01339 HNSCC WGS blood_normal CPT0094550002 4b2e3dab-1455-429e-b205-85434e5e888c_wgs_gdc_realn.bam 90873281871 BAM harmonized CPTAC3 ee89ec01-4041-4e1a-bd54-d8c411c09192 30a299fc492cf75ee057626c68d57d9c {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01339.WGS.T C3N-01339 HNSCC WGS tumor CPT0094490010 CPT0094490010.WholeGenome.RP-1303.bam 55719790090 BAM submitted_aligned CPTAC3 3da03d43-c24c-4174-abeb-ac923462eb7c 7787dc78408506c8aa988aab4fc9c76e {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.WGS.T.hg38 C3N-01339 HNSCC WGS tumor CPT0094490010 1e614b7c-3b45-455f-8314-99d4e3dc91fa_wgs_gdc_realn.bam 81781387131 BAM harmonized CPTAC3 67043d4a-9a8c-4ecd-bda5-4f7b7bb9a265 26db156174ae1737a6cfaa304f87f022 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.WXS.N C3N-01339 HNSCC WXS blood_normal CPT0094550002 CPT0094550002.WholeExome.RP-1303.bam 31367577695 BAM submitted_aligned CPTAC3 f432852c-1f80-490f-bc25-6430d2dbc962 250f7b91606d02acd1f00aab1766662b {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01339.WXS.N.hg38 C3N-01339 HNSCC WXS blood_normal CPT0094550002 4b2e3dab-1455-429e-b205-85434e5e888c_wxs_gdc_realn.bam 42357210689 BAM harmonized CPTAC3 d5f94d9e-7254-4e28-93f2-bd242896d2db 7a02a20c4a3365004e8ad3d920800119 {"aliquot_tag": "ALQ_85e41f1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01339.WXS.T C3N-01339 HNSCC WXS tumor CPT0094490010 CPT0094490010.WholeExome.RP-1303.bam 41966374414 BAM submitted_aligned CPTAC3 2b0d91df-c70f-416f-a93f-c14eb589a147 113de241c8b54c639cf8f6861a18afaf {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01339.WXS.T.hg38 C3N-01339 HNSCC WXS tumor CPT0094490010 1e614b7c-3b45-455f-8314-99d4e3dc91fa_wxs_gdc_realn.bam 57280808078 BAM harmonized CPTAC3 33014bf0-de1f-4524-9f4e-d897b60839db c99d390c1bd657ead945ae08575748b1 {"aliquot_tag": "ALQ_7c5d71d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.MethArray.Green.T C3N-01340 HNSCC Methylation_Array tumor CPT0094560007 203273200073_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1ddbb581-9cb4-451d-8e75-f5a956bc9c40 11aea697f506f2dc7fc8ef26b96921e1 {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.MethArray.Red.T C3N-01340 HNSCC Methylation_Array tumor CPT0094560007 203273200073_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 3a755939-a6d8-4990-9ae0-2a491df79642 34bfd19b6c31097482bd2c58be0e11c7 {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.miRNA-Seq.A.hg38 C3N-01340 HNSCC miRNA-Seq tissue_normal CPT0094580006 d6deeb34-a86d-4099-b3af-1e033a286c40_mirnaseq_gdc_realn.bam 257230535 BAM harmonized CPTAC3 19c1f850-7f31-4775-8512-54b3167f7d78 b65642453af798b0720a72df4611eafd {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01340.miRNA-Seq.S11_L001_R1.A C3N-01340 HNSCC miRNA-Seq tissue_normal CPT0094580006 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L001_R1_001.unaln.bam 230499922 BAM S11_L001_R1 submitted_unaligned CPTAC3 62e758db-19d8-4022-b168-739c05c98e78 613b5683cf3f3da777e2db1afa46ad4b {"aliquot_tag": "ALQ_7a191fb2", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01340.miRNA-Seq.S5_L001_R1.T C3N-01340 HNSCC miRNA-Seq tumor CPT0094560010 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L001_R1_001.unaln.bam 236979318 BAM S5_L001_R1 submitted_unaligned CPTAC3 c058532d-676e-47ae-9d9b-f504060344b3 b9f1c1aa07e142da935680bb0f13f8d7 {"aliquot_tag": "ALQ_355135a7", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.miRNA-Seq.T.hg38 C3N-01340 HNSCC miRNA-Seq tumor CPT0094560010 092346de-1de4-4b5b-ab6d-8ade032e45c3_mirnaseq_gdc_realn.bam 257946927 BAM harmonized CPTAC3 ef7cdf3a-6305-414b-a3f1-c596e78cbebc df91153d54b1908d56be4bde539078f7 {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.RNA-Seq.chimeric.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.chimeric.gdc_realn.bam 264796781 BAM chimeric harmonized CPTAC3 ae92f91d-cd12-4b7d-ad80-fea6cf4e8666 ab1d409979f20e7b3e495e160cd95d95 {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01340.RNA-Seq.chimeric.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.chimeric.gdc_realn.bam 242562339 BAM chimeric harmonized CPTAC3 555cd108-8b85-431f-8693-20d64df8d2da 4a05040a2cd854ae216462cacaf12fac {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.RNA-Seq.genomic.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.genomic.gdc_realn.bam 7970500321 BAM genomic harmonized CPTAC3 5b19bcb8-b5a2-4979-801e-3234c34bbab2 f9ffdda9651e042d4af9338dfe543fee {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01340.RNA-Seq.genomic.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.genomic.gdc_realn.bam 7334324683 BAM genomic harmonized CPTAC3 e68e2df9-1077-4b3d-bed0-fc0cd63fabe0 126ccc4be742822a99f8a3f4ac2e9196 {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.RNA-Seq.S10_L003_R1.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3595538230 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 8f2054cf-f6ab-4c9f-98a4-5e1c95ce1b2b 4815092e49e2ec657b7eeb7bc80df09b {"aliquot_tag": "ALQ_7a191fb2", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01340.RNA-Seq.S10_L003_R2.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4099942149 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 8db1bf52-ab44-4d3a-82cd-c265950b4a9d 1dccbad693fea02841141c310f7a7e3c {"aliquot_tag": "ALQ_7a191fb2", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01340.RNA-Seq.S5_L002_R1.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3258123878 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 0f4b80f9-5b69-4ea2-be2f-4c748c8d1ee5 d66a7b1ef0ac32d45a78cc921dad356c {"aliquot_tag": "ALQ_355135a7", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.RNA-Seq.S5_L002_R2.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 3613851437 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 4f6f6cf6-20b6-40b2-97c3-bfc6bad96682 897c1432c2eb05ba537c0b83a770e29e {"aliquot_tag": "ALQ_355135a7", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.RNA-Seq.transcriptome.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.transcriptome.gdc_realn.bam 10413987936 BAM transcriptome harmonized CPTAC3 e61042ce-d0a9-4db9-8a28-595f9aeeee66 3c62a0fd2d67067657b301d47b068f48 {"aliquot_tag": "ALQ_7a191fb2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01340.RNA-Seq.transcriptome.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.transcriptome.gdc_realn.bam 8860928984 BAM transcriptome harmonized CPTAC3 0d864e06-339f-43de-976b-c663922c755d 047bf2a42ec560c6d8650ff93f3b3bda {"aliquot_tag": "ALQ_355135a7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.WGS.N C3N-01340 HNSCC WGS blood_normal CPT0094620002 CPT0094620002.WholeGenome.RP-1303.bam 60287897320 BAM submitted_aligned CPTAC3 61872ecc-345c-441c-b4e4-1319ba3eed5e 84a557ad6dee51723d4fb2e769e91f61 {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01340.WGS.N.hg38 C3N-01340 HNSCC WGS blood_normal CPT0094620002 596baa98-86ae-490f-be66-13b062e87107_wgs_gdc_realn.bam 88571699040 BAM harmonized CPTAC3 f4155561-aaa4-4806-918b-2b4240d3410e 3872100d7f9fe9f1b7e7a50473d91fdd {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01340.WGS.T C3N-01340 HNSCC WGS tumor CPT0094560007 CPT0094560007.WholeGenome.RP-1303.bam 60616240562 BAM submitted_aligned CPTAC3 9825f542-218e-4879-bccd-9e68e90be523 9cb79e20f573ef2fb8f8ebc67c4e9b8f {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.WGS.T.hg38 C3N-01340 HNSCC WGS tumor CPT0094560007 f9710d5a-c4bb-4b00-b946-703963bd8232_wgs_gdc_realn.bam 87673403751 BAM harmonized CPTAC3 f1b4e15b-0938-481a-99a3-f7cfd6721343 ae3484863c39a8f4d6d8b9a2e15bcc41 {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.WXS.N C3N-01340 HNSCC WXS blood_normal CPT0094620002 CPT0094620002.WholeExome.RP-1303.bam 30133918608 BAM submitted_aligned CPTAC3 4763cd37-5f28-4808-9274-d7c008133817 1a805ee3e219ebb8e4998e59e9113887 {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01340.WXS.N.hg38 C3N-01340 HNSCC WXS blood_normal CPT0094620002 596baa98-86ae-490f-be66-13b062e87107_wxs_gdc_realn.bam 40213635110 BAM harmonized CPTAC3 dbc346b9-3868-4558-9ec6-2fa320defc10 f9a0c29561bd2ae862fa0936180a8152 {"aliquot_tag": "ALQ_b150b1a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01340.WXS.T C3N-01340 HNSCC WXS tumor CPT0094560007 CPT0094560007.WholeExome.RP-1303.bam 21592815753 BAM submitted_aligned CPTAC3 ab74fcb9-c523-4eaf-9d8f-521391cf94fd 4a2dcc463bee6d83fd13cf5b27ec80ec {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01340.WXS.T.hg38 C3N-01340 HNSCC WXS tumor CPT0094560007 f9710d5a-c4bb-4b00-b946-703963bd8232_wxs_gdc_realn.bam 30457402803 BAM harmonized CPTAC3 46c4dbb4-8011-4b04-94cd-00bf725f0fbd 95290976a95f6c19c98654dbb1390aee {"aliquot_tag": "ALQ_b22e9145", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01341.MethArray.Green.T C3N-01341 UCEC Methylation_Array tumor CPT0095280009 202234380099_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 84d58a64-00ed-49f7-a883-f2a0149f85c2 b4877c02186b6b7a0e26338bef0a60e5 {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.MethArray.Red.T C3N-01341 UCEC Methylation_Array tumor CPT0095280009 202234380099_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 891aed95-1da4-49a8-b3c2-bc7b16e54940 07147ea4acef00505b0cb64710340690 {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.miRNA-Seq.S47_L007_R1.T C3N-01341 UCEC miRNA-Seq tumor CPT0095280006 180828_UNC32-K00270_0112_AHWTLNBBXX_GACGAC_S47_L007_R1_001.unaln.bam 236568056 BAM S47_L007_R1 submitted_unaligned CPTAC3 721d8023-0074-4b11-9c54-c06a6c21d738 fa76f775cc0012e9fb6a17f125fb423d {"aliquot_tag": "ALQ_c16b24be", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.miRNA-Seq.T.hg38 C3N-01341 UCEC miRNA-Seq tumor CPT0095280006 8ea25dab-d3b4-4d1b-913f-081255ae905b_mirnaseq_gdc_realn.bam 268088034 BAM harmonized CPTAC3 5b4a97a2-23ee-4005-867f-7013a932820b 3eae6b693ab7d4ee0a30f8b3d33fc72c {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.chimeric.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.chimeric.gdc_realn.bam 34399903 BAM chimeric harmonized CPTAC3 03d105c1-98a7-448d-8067-69da79c3e9cc e1ff52e174667eed5e29e63aeee2cc9d {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.chimeric.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.chimeric.gdc_realn.bam 179374267 BAM chimeric harmonized CPTAC3 6fec07f3-3527-405f-ba13-6840d25fa902 bdbdc45822c72a826b166b267f05ef87 {"aliquot_tag": "ALQ_8606232b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.genomic.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.genomic.gdc_realn.bam 8744525964 BAM genomic harmonized CPTAC3 84d69687-508c-47ec-9a52-b93a3b372b89 88e1481ce0ccfe98758318bdc9a06611 {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.genomic.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.genomic.gdc_realn.bam 8142416728 BAM genomic harmonized CPTAC3 a3582b04-4408-480b-9747-3757549c9621 3823393cd1caba43d1a6bd8a906783d9 {"aliquot_tag": "ALQ_8606232b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.S5_R1.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R1_001.fastq.gz 4892694742 FASTQ S5_R1 submitted_unaligned CPTAC3 574651b1-5a29-46a0-8426-bc2847b406b2 4c2dd3cce52dc89539b73099b7b09d96 {"aliquot_tag": "ALQ_8606232b", "sample": "S5", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.S5_R2.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R2_001.fastq.gz 5107520532 FASTQ S5_R2 submitted_unaligned CPTAC3 834e4efa-7bf9-4d32-bb84-35685982a92e 4458b31047a46c40b0c244d91f0a68a2 {"aliquot_tag": "ALQ_8606232b", "sample": "S5", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.S7_L008_R1.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R1_001.fastq.gz 4375979214 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 235d5a77-136b-493b-8701-7f842a4394ff 8ce698a804bebec2c8dc63191d4c7b3d {"aliquot_tag": "ALQ_c16b24be", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.S7_L008_R2.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R2_001.fastq.gz 4726788363 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 bebef409-9736-49b2-b3d6-4f504b370e21 4de08d3ad5c2a67d0907326b2c41fec5 {"aliquot_tag": "ALQ_c16b24be", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.transcriptome.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.transcriptome.gdc_realn.bam 11874644003 BAM transcriptome harmonized CPTAC3 a6ff538a-3939-4798-866d-8f3307f9f4dd c6c2a13906c824ba0389bfc317e9f155 {"aliquot_tag": "ALQ_c16b24be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.RNA-Seq.transcriptome.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.transcriptome.gdc_realn.bam 3764831648 BAM transcriptome harmonized CPTAC3 47733b9b-2dc9-4789-8d59-51ba0dad55ea b99668ccdcdac8d281063b8474cf07bb {"aliquot_tag": "ALQ_8606232b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.WGS.N C3N-01341 UCEC WGS blood_normal CPT0095300002 CPT0095300002.WholeGenome.RP-1303.bam 55556717642 BAM submitted_aligned CPTAC3 53ac1b4c-87c1-4f7c-90ce-e752bc79d88e fbf30ad5484ba40b17d5b03e1a3a20c7 {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01341.WGS.N.hg38 C3N-01341 UCEC WGS blood_normal CPT0095300002 51ed66a7-3a92-459f-ad86-ef990fa69bd7_wgs_gdc_realn.bam 82441890092 BAM harmonized CPTAC3 0d40e5ec-09dc-49e5-8e4d-b89804ce3731 b8c7ab42e432cef08981926db7019408 {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01341.WGS.T C3N-01341 UCEC WGS tumor CPT0095280009 CPT0095280009.WholeGenome.RP-1303.bam 67136736595 BAM submitted_aligned CPTAC3 0b74d6a8-dbd8-4c2c-a0c4-b040ed1f0d5a 68361d6be81d8951bfe0a4c566db173f {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.WGS.T.hg38 C3N-01341 UCEC WGS tumor CPT0095280009 2381c027-385f-4732-ac4c-90eb375883ca_wgs_gdc_realn.bam 98846305528 BAM harmonized CPTAC3 3ffceba3-744d-4974-9d43-7365de3ce446 b13f5e4e3372828ed6aa6ac04ad079c3 {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.WXS.N C3N-01341 UCEC WXS blood_normal CPT0095300002 CPT0095300002.WholeExome.RP-1303.bam 34718511074 BAM submitted_aligned CPTAC3 169ae9bc-168f-4364-8982-3215945ae5a6 42ee452eb8cf7ce22f5b275d95b1d9bd {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01341.WXS.N.hg38 C3N-01341 UCEC WXS blood_normal CPT0095300002 51ed66a7-3a92-459f-ad86-ef990fa69bd7_wxs_gdc_realn.bam 47684691773 BAM harmonized CPTAC3 f0e114ad-b414-429c-bbb6-7d35aa4867ff 1b79c40007af30af91d2ac4a752bc050 {"aliquot_tag": "ALQ_3d2a78c3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01341.WXS.T C3N-01341 UCEC WXS tumor CPT0095280009 CPT0095280009.WholeExome.RP-1303.bam 32844094808 BAM submitted_aligned CPTAC3 a9b51eeb-f667-4c55-ab2e-5d3179385ab5 7bcd7ef994f328ecbc56fd2cb74c2add {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01341.WXS.T.hg38 C3N-01341 UCEC WXS tumor CPT0095280009 2381c027-385f-4732-ac4c-90eb375883ca_wxs_gdc_realn.bam 44840568350 BAM harmonized CPTAC3 cde64e51-cf27-401f-9a4f-c26d2e251283 574b34527a78a031cafdc5588e4d01bf {"aliquot_tag": "ALQ_51d4392f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.MethArray.Green.T C3N-01342 UCEC Methylation_Array tumor CPT0088140009 202178770006_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 96d3513d-e5f6-4f78-bf02-e72772ea022c 2311bbd9056b57fdf782abe723e585ca {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.MethArray.Red.T C3N-01342 UCEC Methylation_Array tumor CPT0088140009 202178770006_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 dd74d2e3-e4a6-41c9-918c-aa33602eee66 821835b5b0a945afa6a6a6ffec49d5ef {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.miRNA-Seq.S8_L008_R1.T C3N-01342 UCEC miRNA-Seq tumor CPT0088140006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L008_R1_001.unaln.bam 163630286 BAM S8_L008_R1 submitted_unaligned CPTAC3 1c0ebe4c-4de4-4307-8a19-92396cd8712f 0b35bfe3099bc823847ee8b0f9afd5ef {"aliquot_tag": "ALQ_2f72da4f", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.miRNA-Seq.T.hg38 C3N-01342 UCEC miRNA-Seq tumor CPT0088140006 8e30b22d-3e6b-4694-97fe-983b60ecb7cd_mirnaseq_gdc_realn.bam 182133218 BAM harmonized CPTAC3 ebe1de59-e6ba-4554-a47b-d762da2aef66 507a3444b2a4e726a250445d223a94f4 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.chimeric.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.chimeric.gdc_realn.bam 32098278 BAM chimeric harmonized CPTAC3 ddd9161d-0b5c-42f0-ab0f-f2b01234f2c4 c3cc1ab4c80e5a33cf5de741171366e8 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.chimeric.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.chimeric.gdc_realn.bam 242434962 BAM chimeric harmonized CPTAC3 5f1c9b6f-d7b2-41a9-8d8f-548277143233 bd4bf752c4452ca2ed144047f037dab2 {"aliquot_tag": "ALQ_fcc6704b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.genomic.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.genomic.gdc_realn.bam 8860519598 BAM genomic harmonized CPTAC3 0211cb27-4b7f-4b7d-8e66-79d15c6c1aaf 4b7d8f29c98d79d288611f9e487114b8 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.genomic.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.genomic.gdc_realn.bam 10637180413 BAM genomic harmonized CPTAC3 ebd9a848-e1e8-4ae1-9d36-714352b83b91 4886373e453f6d747d86318e04be9a87 {"aliquot_tag": "ALQ_fcc6704b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.S1_L001_R1.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4233820853 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 db49aa38-848e-4196-aa4c-bad8fdc9692f c14ce93d33b1173bdbf2edaf836ef452 {"aliquot_tag": "ALQ_2f72da4f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.S1_L001_R2.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4755674091 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 d617ecc2-eae5-4cbe-a806-f74effc0b0ad 69accc4aef8c857a0e586d6e92a25032 {"aliquot_tag": "ALQ_2f72da4f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.S87_R1.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R1_001.fastq.gz 6595624111 FASTQ S87_R1 submitted_unaligned CPTAC3 7db1340c-3d27-4343-b688-2ec1165435fc d84cc0d8f2e1bfe224b396e3e2c8f632 {"aliquot_tag": "ALQ_fcc6704b", "sample": "S87", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.S87_R2.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R2_001.fastq.gz 6870942105 FASTQ S87_R2 submitted_unaligned CPTAC3 e26318b0-5bd8-40f4-8b79-4126ef228eee bc0e5d4da1a096e87605f8cc1f97d8ca {"aliquot_tag": "ALQ_fcc6704b", "sample": "S87", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.transcriptome.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.transcriptome.gdc_realn.bam 12420669315 BAM transcriptome harmonized CPTAC3 14a6bc31-7e89-42bc-aca0-4f9a4435db96 8ac0f01252a30de0be0582e9564cc3a0 {"aliquot_tag": "ALQ_2f72da4f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.RNA-Seq.transcriptome.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.transcriptome.gdc_realn.bam 5045320309 BAM transcriptome harmonized CPTAC3 33554b3b-4a6d-4dc4-8331-dcf5dceb0684 98af3d5844e218e1e8fcfd91e11732a9 {"aliquot_tag": "ALQ_fcc6704b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.WGS.N C3N-01342 UCEC WGS blood_normal CPT0088170002 CPT0088170002.WholeGenome.RP-1303.bam 70245723844 BAM submitted_aligned CPTAC3 7d6e4ddb-df25-4029-9242-cbec066667e5 807a16b9b095c38423b1f463540b63ff {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01342.WGS.N.hg38 C3N-01342 UCEC WGS blood_normal CPT0088170002 34c0a262-8e89-4e5a-9b3f-562178463514_gdc_realn.bam 106409010851 BAM harmonized CPTAC3 9c5e7c89-800c-43bf-b746-c0ca213c1d50 d9e21e4e276cfe797e45f5f0baeffb00 {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01342.WGS.T C3N-01342 UCEC WGS tumor CPT0088140009 CPT0088140009.WholeGenome.RP-1303.bam 67228515696 BAM submitted_aligned CPTAC3 eaf78e58-9581-4e83-84cb-793ce9ca926a ee0d1ef4d904261a266c63e6815d2f52 {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.WGS.T.hg38 C3N-01342 UCEC WGS tumor CPT0088140009 76064c3b-7b99-4673-827f-1ac70735b23c_gdc_realn.bam 101364481725 BAM harmonized CPTAC3 8a6d577e-1178-4231-a732-793711d34495 315942e62b18e5745486f6c4f49a9c71 {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.WXS.N C3N-01342 UCEC WXS blood_normal CPT0088170002 CPT0088170002.WholeExome.RP-1303.bam 27540443181 BAM submitted_aligned CPTAC3 0dd03f5d-18e7-466e-9cc1-cce887a3f2e5 bad403268cad4afe0c97b8c7a657e6fc {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01342.WXS.N.hg38 C3N-01342 UCEC WXS blood_normal CPT0088170002 34c0a262-8e89-4e5a-9b3f-562178463514_gdc_realn.bam 37451859794 BAM harmonized CPTAC3 caced7d4-d5ac-4b37-bc8f-3576554ac0fc 43d937adc213d0e653339e7fff6fe3b4 {"aliquot_tag": "ALQ_6fbf6486", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01342.WXS.T C3N-01342 UCEC WXS tumor CPT0088140009 CPT0088140009.WholeExome.RP-1303.bam 25946783357 BAM submitted_aligned CPTAC3 dfcbb888-875c-4c1b-9a57-822338abc392 1592f5d5e538916790fdb3ee129211ff {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01342.WXS.T.hg38 C3N-01342 UCEC WXS tumor CPT0088140009 76064c3b-7b99-4673-827f-1ac70735b23c_gdc_realn.bam 36017580837 BAM harmonized CPTAC3 eaaa9752-8535-40b0-8836-6774cdaaae9b db8b521ed808fd88d277b3843b7e7e9f {"aliquot_tag": "ALQ_bfcdc7de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.MethArray.Green.T C3N-01344 UCEC Methylation_Array tumor CPT0116340007 203219760065_R02C01_Grn.idat 13676230 IDAT Green NA CPTAC3 b21c5460-73e4-4572-a27c-12f11604fad9 4927ee7eda04745c87661402cf627fa6 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.MethArray.Red.T C3N-01344 UCEC Methylation_Array tumor CPT0116340007 203219760065_R02C01_Red.idat 13676230 IDAT Red NA CPTAC3 d86cb728-8ad6-48ea-98f1-3f2b51a4cb96 87361e9a0c550605a04a767b36fc02ea {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.miRNA-Seq.A.hg38 C3N-01344 UCEC miRNA-Seq tissue_normal CPT0116450009 b34190a6-a785-480b-bee9-5f3ca67b04df_mirnaseq_gdc_realn.bam 192283298 BAM harmonized CPTAC3 7efef1f6-750c-42c8-8dbc-57eb6c0a96e1 bbe591330abe68fd8e53e63d90843771 {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.miRNA-Seq.S44_L003_R1.A C3N-01344 UCEC miRNA-Seq tissue_normal CPT0116450009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L003_R1_001.unaln.bam 172288623 BAM S44_L003_R1 submitted_unaligned CPTAC3 038f2766-5102-43c7-b34a-6ea50e549931 4b7cb79a7dd3ffe5142bab7c1affe543 {"aliquot_tag": "ALQ_8a6b0be8", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.miRNA-Seq.S45_L003_R1.T C3N-01344 UCEC miRNA-Seq tumor CPT0116340010 190108_UNC31-K00269_0176_AHYGLVBBXX_TCATTC_S45_L003_R1_001.unaln.bam 236362337 BAM S45_L003_R1 submitted_unaligned CPTAC3 20154c43-b31c-44bd-88dc-f432bdded793 e6b235a3a3d14b868c3c928ff26cce40 {"aliquot_tag": "ALQ_cac99b05", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.miRNA-Seq.T.hg38 C3N-01344 UCEC miRNA-Seq tumor CPT0116340010 067bfd9e-f722-4b1f-887e-40eac88cb4eb_mirnaseq_gdc_realn.bam 260617130 BAM harmonized CPTAC3 e8d491f7-869f-48a1-95d7-03de57431235 ad1cf5598fce7fe232db4bcadd323482 {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.chimeric.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.chimeric.gdc_realn.bam 34289602 BAM chimeric harmonized CPTAC3 7bc55348-8d40-4665-8446-1f83d18dc1fb f39cf8afed4499aa5cf8bc35ad8935af {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.RNA-Seq.chimeric.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.chimeric.gdc_realn.bam 33563209 BAM chimeric harmonized CPTAC3 bdab93ca-86dd-43df-b41e-e0639e32059e e1f28032b38fc8dd7f8654127ace0d17 {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.chimeric.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.chimeric.gdc_realn.bam 10853187 BAM chimeric harmonized CPTAC3 7c565f6e-d73c-4811-af8b-743f0cf032c0 c046a045bcfd33df24fbe4a065dd34cd {"aliquot_tag": "ALQ_c1a659fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.genomic.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.genomic.gdc_realn.bam 8824683659 BAM genomic harmonized CPTAC3 a6a87000-389a-4b2e-9fc5-5e7783444640 aab4e50e884f4017dfa57207061d83bd {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.RNA-Seq.genomic.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.genomic.gdc_realn.bam 9068020251 BAM genomic harmonized CPTAC3 1b008801-6ef1-458c-9355-f4c7b794635a 333b417bb754e17f11295fba497416fd {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.genomic.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.genomic.gdc_realn.bam 3446400743 BAM genomic harmonized CPTAC3 be86e2ff-af0c-4bb2-bb18-5a1b3f882b5f 1e0529bd2efd79292ccffd6048483aa2 {"aliquot_tag": "ALQ_c1a659fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.S19_L007_R1.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R1_001.fastq.gz 4190146073 FASTQ S19_L007_R1 submitted_unaligned CPTAC3 6c279227-c3ea-429b-8f27-999e61e49213 3294aa0c3a68d7b9803d5ad238c28b9c {"aliquot_tag": "ALQ_cac99b05", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.S19_L007_R2.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R2_001.fastq.gz 4442762871 FASTQ S19_L007_R2 submitted_unaligned CPTAC3 6b92fce0-bf2f-4f35-ac1a-b5e15559788d 7289996e7835ceaec23a880ff0c078da {"aliquot_tag": "ALQ_cac99b05", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.S4_L005_R1.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3940056211 FASTQ S4_L005_R1 submitted_unaligned CPTAC3 e3d24a9d-b91b-448f-b4d7-585e2078ac58 3a392c78be596c1865e15220f17462ee {"aliquot_tag": "ALQ_8a6b0be8", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.RNA-Seq.S4_L005_R2.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 4416845317 FASTQ S4_L005_R2 submitted_unaligned CPTAC3 147ef354-4b8e-4ca4-9203-ca115de6f3ad ec3baf4082bad7ff844402dc22cff080 {"aliquot_tag": "ALQ_8a6b0be8", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.RNA-Seq.S72_R1.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R1_001.fastq.gz 1846518862 FASTQ S72_R1 submitted_unaligned CPTAC3 d10e3e04-1e75-4601-aca5-1ca201432a1a 7250f8d3da7bd08e90af9d59860c5435 {"aliquot_tag": "ALQ_c1a659fb", "sample": "S72", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.S72_R2.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R2_001.fastq.gz 2043043260 FASTQ S72_R2 submitted_unaligned CPTAC3 b094184c-2b14-43f0-8693-1ad718349f18 35d8c27e438008115db6df73f5a5686c {"aliquot_tag": "ALQ_c1a659fb", "sample": "S72", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.transcriptome.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.transcriptome.gdc_realn.bam 11181324536 BAM transcriptome harmonized CPTAC3 ef37908e-1149-43d7-b316-3d271ec614dc 6a28d291784488a110484b9d4aa3f053 {"aliquot_tag": "ALQ_8a6b0be8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.RNA-Seq.transcriptome.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.transcriptome.gdc_realn.bam 11115478718 BAM transcriptome harmonized CPTAC3 44478569-f9a7-45fb-847f-15212a0a685d 0b7d823b29ff0cb161cfc8eef3b76aa2 {"aliquot_tag": "ALQ_cac99b05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.RNA-Seq.transcriptome.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.transcriptome.gdc_realn.bam 3184053141 BAM transcriptome harmonized CPTAC3 5d8f97c6-2308-4955-8485-1a598b3c3165 4ca4f12e51661103686a240f23736a3e {"aliquot_tag": "ALQ_c1a659fb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.WGS.A C3N-01344 UCEC WGS tissue_normal CPT0116450006 CPT0116450006.WholeGenome.RP-1303.bam 67056645980 BAM submitted_aligned CPTAC3 8c7e13fb-b439-4358-9ea6-282144770238 575d4477b06b37776b16236a8728573e {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.WGS.A.hg38 C3N-01344 UCEC WGS tissue_normal CPT0116450006 e116178e-8092-4784-b1a3-f9b5fa31fd02_wgs_gdc_realn.bam 98478461965 BAM harmonized CPTAC3 d0ca7041-a1d7-4b29-adb9-1588fe8aa27b 0f66ae36c9f9ef802a096683ad41ec41 {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.WGS.N C3N-01344 UCEC WGS blood_normal CPT0116540002 CPT0116540002.WholeGenome.RP-1303.bam 79449703152 BAM submitted_aligned CPTAC3 0f13cf0e-3fd3-457d-99a1-a5ea0dfe1829 20ac368c0cf6e95f06045b5833d29bc9 {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01344.WGS.N.hg38 C3N-01344 UCEC WGS blood_normal CPT0116540002 c95a75ae-c3f0-4f79-bfa2-33a400d6d622_wgs_gdc_realn.bam 114404683360 BAM harmonized CPTAC3 d698f6a0-1455-405f-83e8-08b9f833dd10 36fdd1d3c29517bae350ab6e1e5441b7 {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01344.WGS.T C3N-01344 UCEC WGS tumor CPT0116340007 CPT0116340007.WholeGenome.RP-1303.bam 60753331025 BAM submitted_aligned CPTAC3 39f7534e-255e-4f7b-a43e-8bd786cc4abe 74a62ae7472a1db0304712d59bfa4937 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.WGS.T.hg38 C3N-01344 UCEC WGS tumor CPT0116340007 39d728d7-3b5b-4b15-9c73-fd9714c9283c_wgs_gdc_realn.bam 91135213092 BAM harmonized CPTAC3 766b8cfa-e2c4-448b-9440-aa7335aca50f c6daaa5b1ce303131fb2bca9d67fcc51 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.WXS.A C3N-01344 UCEC WXS tissue_normal CPT0116450006 CPT0116450006.WholeExome.RP-1303.bam 26447638777 BAM submitted_aligned CPTAC3 c576b234-b9ef-4565-904c-71d9626f8b28 57a5f1e07a1130bef4cf0e7b36bb540c {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.WXS.A.hg38 C3N-01344 UCEC WXS tissue_normal CPT0116450006 e116178e-8092-4784-b1a3-f9b5fa31fd02_wxs_gdc_realn.bam 36974407346 BAM harmonized CPTAC3 06ade7d9-ac37-468a-b55f-064a589f6023 69572658814b88efedc248a125fdbb54 {"aliquot_tag": "ALQ_1ad41679", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01344.WXS.N C3N-01344 UCEC WXS blood_normal CPT0116540002 CPT0116540002.WholeExome.RP-1303.bam 27290653199 BAM submitted_aligned CPTAC3 6314bbad-7ddc-48ee-a1fd-7ab040287066 565101627acfc84607999a4da0534cf7 {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01344.WXS.N.hg38 C3N-01344 UCEC WXS blood_normal CPT0116540002 c95a75ae-c3f0-4f79-bfa2-33a400d6d622_wxs_gdc_realn.bam 38000490816 BAM harmonized CPTAC3 15b50115-41aa-4a9c-9011-fddc7a2ba9dd 4e91d7a7aa0941b7953ad4302e34158f {"aliquot_tag": "ALQ_eb852875", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01344.WXS.T C3N-01344 UCEC WXS tumor CPT0116340007 CPT0116340007.WholeExome.RP-1303.bam 25572776908 BAM submitted_aligned CPTAC3 d35fbf19-d4d7-4300-99af-6b762b6404e6 56a11d2cfb6f56a1f5f6cd521e10cb69 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01344.WXS.T.hg38 C3N-01344 UCEC WXS tumor CPT0116340007 39d728d7-3b5b-4b15-9c73-fd9714c9283c_wxs_gdc_realn.bam 35185700312 BAM harmonized CPTAC3 554a3124-df16-483e-b4cd-efa9f26c8270 5dd6f07504e228838d9045bedaf2f218 {"aliquot_tag": "ALQ_4db63fe7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01346.MethArray.Green.T C3N-01346 UCEC Methylation_Array tumor CPT0116550007 203219650169_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c4dbe072-b498-4988-b848-e362fe591bc9 0e79e88086e77c249e0464ce3d33d7e5 {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.MethArray.Red.T C3N-01346 UCEC Methylation_Array tumor CPT0116550007 203219650169_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 515f2280-7763-42d3-9512-f7a44f7ddeff 4b1fba93139fa724e3e68a63964535ed {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.miRNA-Seq.A.hg38 C3N-01346 UCEC miRNA-Seq tissue_normal CPT0116570009 37a85145-2dc8-48a1-a7ad-f046d051657b_mirnaseq_gdc_realn.bam 312355863 BAM harmonized CPTAC3 bfa31e9a-8460-484c-bad6-d12999eaccdc c00e2e185240a3d8ac88c5bd2ba3f287 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.miRNA-Seq.S21_L001_R1.A C3N-01346 UCEC miRNA-Seq tissue_normal CPT0116570009 181119_UNC31-K00269_0165_AH27WCBBXY_TCATTC_S21_L001_R1_001.unaln.bam 269964627 BAM S21_L001_R1 submitted_unaligned CPTAC3 d40905cf-35b6-43a6-969d-7443041c33c8 f857d94c6af04ac38be48a5dbe333c2d {"aliquot_tag": "ALQ_3bf78b2d", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.miRNA-Seq.S31_L002_R1.T C3N-01346 UCEC miRNA-Seq tumor CPT0116550010 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L002_R1_001.unaln.bam 173984982 BAM S31_L002_R1 submitted_unaligned CPTAC3 25abb93d-4661-43c2-b088-87b2ee29b853 e93e56a0355323622871f6837fec8e58 {"aliquot_tag": "ALQ_21f051a8", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.miRNA-Seq.T.hg38 C3N-01346 UCEC miRNA-Seq tumor CPT0116550010 72d8c63b-7b55-423b-ab0d-d8662bcc1ee4_mirnaseq_gdc_realn.bam 191271842 BAM harmonized CPTAC3 cde54208-bf04-4e3c-a7dd-e559c0647580 e32485c08881a79a938f791f74c6fa4a {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.RNA-Seq.chimeric.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.chimeric.gdc_realn.bam 36921896 BAM chimeric harmonized CPTAC3 26dea4b4-2927-42c0-92e0-fa86fbe9675c 1a355b85297f2ca774d33b842208e634 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.RNA-Seq.chimeric.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.chimeric.gdc_realn.bam 144942070 BAM chimeric harmonized CPTAC3 d41198c0-0f11-44a0-8bcf-3cea2dc2bef5 78e3bc31a7d159eb01900f93efc5f229 {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.RNA-Seq.genomic.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.genomic.gdc_realn.bam 9206674981 BAM genomic harmonized CPTAC3 dfad510b-6499-45ed-b153-48c5b7adb350 986d5ef9065704996b284296dfd89716 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.RNA-Seq.genomic.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.genomic.gdc_realn.bam 9672996414 BAM genomic harmonized CPTAC3 66257f21-ca50-4336-9ebf-9f600f561b58 d96841e8d4877973a65556cf4634be0c {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.RNA-Seq.S11_L003_R1.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R1_001.fastq.gz 4055631261 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 e471cc71-0f0b-421b-a1fb-40136d957698 f4012ff6174a3cbad492d64357af63e1 {"aliquot_tag": "ALQ_21f051a8", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.RNA-Seq.S11_L003_R2.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R2_001.fastq.gz 4376754718 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 05f8cd15-4e8b-4bc0-abb9-86024f30587e 9332afa7fe0a9876b8bd24935f401456 {"aliquot_tag": "ALQ_21f051a8", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.RNA-Seq.S5_L008_R1.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R1_001.fastq.gz 4017938022 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 7f559a17-edd2-4465-aee8-61684540c52e d6c53ff4d39721d31f65200c02147dc2 {"aliquot_tag": "ALQ_3bf78b2d", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.RNA-Seq.S5_L008_R2.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4469894731 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 a2d046e8-2efb-4587-8ac7-fb8e6e340b40 5dc381c6ca29b04ea32f11d3eb4bc297 {"aliquot_tag": "ALQ_3bf78b2d", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.RNA-Seq.transcriptome.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.transcriptome.gdc_realn.bam 11314507147 BAM transcriptome harmonized CPTAC3 3b647cc5-7d27-4d0c-bbff-92249606e922 379a069520ad0e428dd12e8057462782 {"aliquot_tag": "ALQ_3bf78b2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.RNA-Seq.transcriptome.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.transcriptome.gdc_realn.bam 9730008462 BAM transcriptome harmonized CPTAC3 493f70d1-06d1-49d6-88c1-2e9b03d8892a 4b5819cbe0a6b928444cd009252663a9 {"aliquot_tag": "ALQ_21f051a8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.WGS.A C3N-01346 UCEC WGS tissue_normal CPT0116570006 CPT0116570006.WholeGenome.RP-1303.bam 63203695291 BAM submitted_aligned CPTAC3 e231bc3c-8a0b-4f87-ac85-cf587137af57 4677c66d04373eb426ac36a112d97a18 {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.WGS.A.hg38 C3N-01346 UCEC WGS tissue_normal CPT0116570006 d32a4900-85bb-4bc2-9700-97bf3f5cdb30_wgs_gdc_realn.bam 92975001762 BAM harmonized CPTAC3 4a6aa601-aadd-44b2-8753-ea0c52793c77 ff928fab098c313b6275f8fca1d6c38c {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.WGS.N C3N-01346 UCEC WGS blood_normal CPT0116610002 CPT0116610002.WholeGenome.RP-1303.bam 63027333099 BAM submitted_aligned CPTAC3 4653a8b0-a664-4805-9186-879bd520b70f ac21c35fc67fe84a68ca5719af254dde {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01346.WGS.N.hg38 C3N-01346 UCEC WGS blood_normal CPT0116610002 3db17e2b-7fc3-4dc1-9fa9-e0859db32a3e_wgs_gdc_realn.bam 93829055269 BAM harmonized CPTAC3 0149a1bf-30e0-41c3-994d-70bb82818c4d 7799ce262020a896fcb2002ca7384a7d {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01346.WGS.T C3N-01346 UCEC WGS tumor CPT0116550007 CPT0116550007.WholeGenome.RP-1303.bam 68253371730 BAM submitted_aligned CPTAC3 f5585019-268c-4cbc-a277-ff3029923103 7fc00b22db86adb1f542d13ff9be045e {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.WGS.T.hg38 C3N-01346 UCEC WGS tumor CPT0116550007 c045de53-714c-4f81-8f6a-333f80db7d72_wgs_gdc_realn.bam 98232688673 BAM harmonized CPTAC3 1a0c3a89-4547-4e37-aede-265ae25de36f 46d655a8ac69da252826439ba476e0ba {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.WXS.A C3N-01346 UCEC WXS tissue_normal CPT0116570006 CPT0116570006.WholeExome.RP-1303.bam 22824271301 BAM submitted_aligned CPTAC3 80a6c220-503a-4a69-9c81-bf995175e82c cf3804f6737865fe2dfa1482148c8bcb {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.WXS.A.hg38 C3N-01346 UCEC WXS tissue_normal CPT0116570006 d32a4900-85bb-4bc2-9700-97bf3f5cdb30_wxs_gdc_realn.bam 30811970821 BAM harmonized CPTAC3 2068bbef-ceaa-4f33-9078-6c12b63adeaa 903448e48ab1bdca2799bfca23ccfb3d {"aliquot_tag": "ALQ_ab4896bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01346.WXS.N C3N-01346 UCEC WXS blood_normal CPT0116610002 CPT0116610002.WholeExome.RP-1303.bam 31397496035 BAM submitted_aligned CPTAC3 008f12f6-e262-4f69-821d-32f09c4a56fe 8ec630ce069d5c1daf2ccfaf48ac378c {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01346.WXS.N.hg38 C3N-01346 UCEC WXS blood_normal CPT0116610002 3db17e2b-7fc3-4dc1-9fa9-e0859db32a3e_wxs_gdc_realn.bam 42095488353 BAM harmonized CPTAC3 1a0e6a0f-57d5-4378-80a4-d124eb1a8779 06006b876918a6bfbd1760192b081353 {"aliquot_tag": "ALQ_a5f1d5ab", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01346.WXS.T C3N-01346 UCEC WXS tumor CPT0116550007 CPT0116550007.WholeExome.RP-1303.bam 26478617925 BAM submitted_aligned CPTAC3 fdca91d2-25b0-4f76-857c-db178c70dbfd 2aa0330deb280b0c379d49629da0cb39 {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01346.WXS.T.hg38 C3N-01346 UCEC WXS tumor CPT0116550007 c045de53-714c-4f81-8f6a-333f80db7d72_wxs_gdc_realn.bam 36875011825 BAM harmonized CPTAC3 57d796cc-0636-4958-937c-4f8bdb46ebbe 7c1f26bf9fddbcdfce50c76e237a6b69 {"aliquot_tag": "ALQ_a68ff54a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.MethArray.Green.T C3N-01349 UCEC Methylation_Array tumor CPT0116630006 203028200101_R03C01_Grn.idat 13676235 IDAT Green NA CPTAC3 d7ef4697-992c-4ad3-b22b-ffcb5df38aed ff67083ad7f954d99aca3eb3393dac42 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.MethArray.Red.T C3N-01349 UCEC Methylation_Array tumor CPT0116630006 203028200101_R03C01_Red.idat 13676235 IDAT Red NA CPTAC3 b1eb7174-1d5a-44b9-b6de-3625c4a8d794 492e48dc51cdecfb4e061ce691a7f857 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.miRNA-Seq.S32_L005_R1.T C3N-01349 UCEC miRNA-Seq tumor CPT0116630009 181119_UNC31-K00269_0165_AH27WCBBXY_ACTTGA_S32_L005_R1_001.unaln.bam 229017496 BAM S32_L005_R1 submitted_unaligned CPTAC3 cfcff0fa-1511-4e8a-bc28-b560d4f29f46 cfb526f10baeacdbb49e2f4591a49d7c {"aliquot_tag": "ALQ_48e35f43", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.miRNA-Seq.T.hg38 C3N-01349 UCEC miRNA-Seq tumor CPT0116630009 c1d61e42-d4bb-455f-b8c5-e166aa1cb038_mirnaseq_gdc_realn.bam 255389054 BAM harmonized CPTAC3 7375db27-d2f5-4672-9ca5-0a37e9585819 3febb90aff40ad91a7e74303e80456de {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.chimeric.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.chimeric.gdc_realn.bam 70366872 BAM chimeric harmonized CPTAC3 5a9a5276-3d88-4a59-9a14-9a061469b66d bcfcefd5310001614b4d45b745fe93cc {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.chimeric.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.chimeric.gdc_realn.bam 218001226 BAM chimeric harmonized CPTAC3 b4e9316b-7b0a-4ba8-940e-2d090ad104c9 5e0ffe3500ee2c05221209aa3568f375 {"aliquot_tag": "ALQ_7a5202e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.genomic.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.genomic.gdc_realn.bam 9394931911 BAM genomic harmonized CPTAC3 01bf4f9e-c502-45c4-bd96-e61bc7d08728 2fc5957908ff716a4e8873e995b18267 {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.genomic.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.genomic.gdc_realn.bam 11269607142 BAM genomic harmonized CPTAC3 8d415e88-fd14-4236-b7ea-e9ebff3485e1 e39966cc2c570b143cc8db10e357c8ec {"aliquot_tag": "ALQ_7a5202e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.S10_L003_R1.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R1_001.fastq.gz 4111081520 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 61da9b88-7482-4b7a-8e66-275ecf12ceaf 557c998197c73fb615c5bf788fb9299f {"aliquot_tag": "ALQ_48e35f43", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.S10_L003_R2.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R2_001.fastq.gz 4449704981 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 c23d4640-ab47-475d-9805-92cabdd16f22 934c617301e51fabd4b69539a2c06d94 {"aliquot_tag": "ALQ_48e35f43", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.S14_R1.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R1_001.fastq.gz 6843220107 FASTQ S14_R1 submitted_unaligned CPTAC3 4d1944a9-6be7-416a-95e6-09ba204a1156 1a9f68dce2633edc8d02618e28b8b3b2 {"aliquot_tag": "ALQ_7a5202e5", "sample": "S14", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.S14_R2.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R2_001.fastq.gz 6973914603 FASTQ S14_R2 submitted_unaligned CPTAC3 1a3dab38-cbec-4f18-9fff-d2ba31895334 b692c91aa4a768a6f2762d42af54b165 {"aliquot_tag": "ALQ_7a5202e5", "sample": "S14", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.transcriptome.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.transcriptome.gdc_realn.bam 11307795323 BAM transcriptome harmonized CPTAC3 f0d7cd15-763c-4da1-ac6c-4c8c21e73949 16c24fd5706401a508f850a43f302e28 {"aliquot_tag": "ALQ_48e35f43", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.RNA-Seq.transcriptome.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.transcriptome.gdc_realn.bam 5188615671 BAM transcriptome harmonized CPTAC3 998a9a10-8ff5-4beb-bd5f-ae198b42efb6 2c89f7a9865b358099a9efe167b9b6b1 {"aliquot_tag": "ALQ_7a5202e5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.WGS.N C3N-01349 UCEC WGS blood_normal CPT0116700002 CPT0116700002.WholeGenome.RP-1303.bam 60320871709 BAM submitted_aligned CPTAC3 dff326aa-1f51-4b76-a66a-305f223c66ff be68943d798af4971a30a1d8eb30b7cd {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01349.WGS.N.hg38 C3N-01349 UCEC WGS blood_normal CPT0116700002 567a10ad-cdde-4eb0-8466-fc347bebfc3d_wgs_gdc_realn.bam 87428347472 BAM harmonized CPTAC3 6207248b-6334-4d87-a3fe-328bd55629f8 c42c45505bb41d9b485e3d6cf383a855 {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01349.WGS.T C3N-01349 UCEC WGS tumor CPT0116630006 CPT0116630006.WholeGenome.RP-1303.bam 67783617495 BAM submitted_aligned CPTAC3 76772d29-4e97-4528-82d4-55c26b02b3b6 675bec04504d4303bd140f34c94b9e76 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.WGS.T.hg38 C3N-01349 UCEC WGS tumor CPT0116630006 22644f97-481a-4e62-a318-5f5e77b80855_wgs_gdc_realn.bam 98951152542 BAM harmonized CPTAC3 fc1377b1-042b-4c9d-91a4-03028f920461 9049ac81ce0bf12d669894145db7f871 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.WXS.N C3N-01349 UCEC WXS blood_normal CPT0116700002 CPT0116700002.WholeExome.RP-1303.bam 32061420908 BAM submitted_aligned CPTAC3 74985518-2c76-4279-8ada-4b1752610b06 f99b1f5cd6e0fb89fb79a9557f92e7ac {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01349.WXS.N.hg38 C3N-01349 UCEC WXS blood_normal CPT0116700002 567a10ad-cdde-4eb0-8466-fc347bebfc3d_wxs_gdc_realn.bam 42808716219 BAM harmonized CPTAC3 529af22f-6b99-4f52-8adf-7d13636e3990 c79003c83ba7399776b3d6a9c88ece4e {"aliquot_tag": "ALQ_53cd2fbe", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01349.WXS.T C3N-01349 UCEC WXS tumor CPT0116630006 CPT0116630006.WholeExome.RP-1303.bam 21866618462 BAM submitted_aligned CPTAC3 4b1d20a1-9201-493b-8b52-441b0a864589 0e0f1a5e3232a759d56c8d631cb8b790 {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01349.WXS.T.hg38 C3N-01349 UCEC WXS tumor CPT0116630006 22644f97-481a-4e62-a318-5f5e77b80855_wxs_gdc_realn.bam 30110828198 BAM harmonized CPTAC3 c94b89bc-2589-4dbc-b42c-53dbd252d63b 72f0ea119f8dca0859e1d1efa871369f {"aliquot_tag": "ALQ_d85c42d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.MethArray.Green.A C3N-01361 CCRCC Methylation_Array tissue_normal CPT0088780009 204930640065_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 eceacdf9-1834-4152-8d29-6a38699ae662 d78567ebdd971b6e8175bfa8ced2d5c1 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.MethArray.Green.T C3N-01361 CCRCC Methylation_Array tumor CPT0088760009 202163550076_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 44fb3ccb-2def-4a3a-bf6e-7e98252c80d8 402263042c100be61b76d619e178f95e {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.MethArray.Red.A C3N-01361 CCRCC Methylation_Array tissue_normal CPT0088780009 204930640065_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 7fb57148-3fb2-4d04-9bdf-5fb415c4de48 0848102ec1b65617ddf63ce8c9a5fab1 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.MethArray.Red.T C3N-01361 CCRCC Methylation_Array tumor CPT0088760009 202163550076_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f90e083e-674e-4f7a-af58-6db5c06f3b0c 0bc7c3e0c44e7b284f19cf1707518f17 {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.miRNA-Seq.A.hg38 C3N-01361 CCRCC miRNA-Seq tissue_normal CPT0088780006 6470670b-c83c-4f97-95d2-371a9abb8147_mirnaseq_gdc_realn.bam 205501599 BAM harmonized CPTAC3 70023b0c-15ee-4c9b-ada9-0e625a08d849 a1e30744e8a3bc20a6f452920fcd8d56 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.miRNA-Seq.S16_L006_R1.T C3N-01361 CCRCC miRNA-Seq tumor CPT0088760006 181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L006_R1_001.unaln.bam 167186391 BAM S16_L006_R1 submitted_unaligned CPTAC3 4952dc79-4f28-4832-a1b9-0dec1f6703f8 9e38e0551ecbd1ef03bd88884b5b46a3 {"aliquot_tag": "ALQ_83eb6a32", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.miRNA-Seq.S32_L002_R1.A C3N-01361 CCRCC miRNA-Seq tissue_normal CPT0088780006 181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L002_R1_001.unaln.bam 182965471 BAM S32_L002_R1 submitted_unaligned CPTAC3 191d8926-bf18-48a3-af5d-6bd3d48fb3d2 67001b2a00b7eac8a5bb7a4220a66c6d {"aliquot_tag": "ALQ_3cdbd453", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.miRNA-Seq.T.hg38 C3N-01361 CCRCC miRNA-Seq tumor CPT0088760006 24b5dbbf-c2b1-4474-9244-db3c3ff8fee5_mirnaseq_gdc_realn.bam 189207498 BAM harmonized CPTAC3 e4792232-f24c-4a4c-8ea3-818f6d973d7e 44aa8b36813eaf96b15995c278dd0a63 {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.RNA-Seq.chimeric.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.chimeric.gdc_realn.bam 33049036 BAM chimeric harmonized CPTAC3 195b2137-2471-47ac-91e9-c3feb26c72fd 073f1ba3dd9a1888f9ef27ca5099cc26 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.RNA-Seq.chimeric.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.chimeric.gdc_realn.bam 37150267 BAM chimeric harmonized CPTAC3 5090887a-596c-4db6-802a-5185598062fe b81cee855040a5fec1d52628b1f3514a {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.RNA-Seq.genomic.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.genomic.gdc_realn.bam 4559444430 BAM genomic harmonized CPTAC3 56825602-f6c1-449d-a026-1e379762e07c b4b3d4dee1d102db8f0d49000d02b157 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.RNA-Seq.genomic.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.genomic.gdc_realn.bam 7757155451 BAM genomic harmonized CPTAC3 c3f9da0a-ffb7-46d6-9b53-5b15b3b51fc9 e100319035d9096e3ea887fee3c7b572 {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.RNA-Seq.S15_L004_R1.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R1_001.fastq.gz 3758817926 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 167936d6-1173-432c-b2ad-7a4d15125075 80cc9975c4157c7fdbd6a4ac12e76800 {"aliquot_tag": "ALQ_83eb6a32", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.RNA-Seq.S15_L004_R2.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R2_001.fastq.gz 4094318640 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 aa2585d2-e488-466b-8b9b-e07d7068743a effd398ec87c20ab98afb19dbb7171f9 {"aliquot_tag": "ALQ_83eb6a32", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.RNA-Seq.S3_L007_R1.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R1_001.fastq.gz 2303551148 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 584971f6-a858-4b7a-b5e1-fae58b07a531 96d69435ef9e2bba145a8d8c9bed93dd {"aliquot_tag": "ALQ_3cdbd453", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.RNA-Seq.S3_L007_R2.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R2_001.fastq.gz 2415104375 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 479821bb-bdfd-4dad-aade-fec8275e7753 8693e553bbdfa15cefb92d87a496d795 {"aliquot_tag": "ALQ_3cdbd453", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.RNA-Seq.transcriptome.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.transcriptome.gdc_realn.bam 5640123366 BAM transcriptome harmonized CPTAC3 cdf2d542-bf1f-4994-a4b2-b054cc735412 be219a45fecaec194831b380a94c9c67 {"aliquot_tag": "ALQ_3cdbd453", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.RNA-Seq.transcriptome.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.transcriptome.gdc_realn.bam 9984298492 BAM transcriptome harmonized CPTAC3 3c02c18b-6d40-4af8-9354-bceefb37e568 e48fdc3232784b398c2d1155b50c778f {"aliquot_tag": "ALQ_83eb6a32", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.WGS.A C3N-01361 CCRCC WGS tissue_normal CPT0088780009 CPT0088780009.WholeGenome.RP-1303.bam 52356742485 BAM submitted_aligned CPTAC3 4727fff2-982d-41e2-a3fb-59b127bd4807 b40bea06be206b07cc925a69e2e9db76 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.WGS.A.hg38 C3N-01361 CCRCC WGS tissue_normal CPT0088780009 e383b93a-23df-4fa3-9434-c5b7e3c428e6_wgs_gdc_realn.bam 76776046775 BAM harmonized CPTAC3 857615e9-258a-452c-9a47-0852c2b32c92 92b77344d3605f7e42390b291ab24886 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.WGS.N C3N-01361 CCRCC WGS blood_normal CPT0088820002 CPT0088820002.WholeGenome.RP-1303.bam 63003621552 BAM submitted_aligned CPTAC3 547ac4c3-2de9-4f34-9ef2-eb9a0e3a1d91 953752b15e43ec9eec693791e40159d7 {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01361.WGS.N.hg38 C3N-01361 CCRCC WGS blood_normal CPT0088820002 0a0e20bd-efd5-444a-b89b-b7c240a062c7_gdc_realn.bam 94124398732 BAM harmonized CPTAC3 b5e5711c-a2fe-4d27-a0bc-bfc24610700f 57bb573ced9d585368da55c7fefe606b {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01361.WGS.T C3N-01361 CCRCC WGS tumor CPT0088760009 CPT0088760009.WholeGenome.RP-1303.bam 79284930807 BAM submitted_aligned CPTAC3 0bdad45d-1274-4f46-b7f3-82f215ffd3ca d6e4ae92d988f3d5ed242855635472e7 {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.WGS.T.hg38 C3N-01361 CCRCC WGS tumor CPT0088760009 fbd6a4c7-253b-4895-83a8-349aae8f0273_gdc_realn.bam 118619538470 BAM harmonized CPTAC3 513087cd-d722-4195-b1cd-1f64546057a8 ea4dd6683d6ee7cdebe1ab2a4bcf9a68 {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.WXS.A C3N-01361 CCRCC WXS tissue_normal CPT0088780009 CPT0088780009.WholeExome.RP-1303.bam 34802303911 BAM submitted_aligned CPTAC3 5aff2890-65bf-4daf-abab-321472bcd41f a35c760816473c258606bb0c47d97719 {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.WXS.A.hg38 C3N-01361 CCRCC WXS tissue_normal CPT0088780009 e383b93a-23df-4fa3-9434-c5b7e3c428e6_wxs_gdc_realn.bam 47138172770 BAM harmonized CPTAC3 50cf77c6-ccdc-4c75-9636-3827f74d0538 e207d1ebc1aa3ba701597b2c354c4fbb {"aliquot_tag": "ALQ_ac64c9c2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01361.WXS.N C3N-01361 CCRCC WXS blood_normal CPT0088820002 CPT0088820002.WholeExome.RP-1303.bam 30022687384 BAM submitted_aligned CPTAC3 1f840f6e-f976-46eb-85ee-096aca39e1c1 72ce61a737eb9f9239ea03f5f2eb43b3 {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01361.WXS.N.hg38 C3N-01361 CCRCC WXS blood_normal CPT0088820002 0a0e20bd-efd5-444a-b89b-b7c240a062c7_gdc_realn.bam 40906222372 BAM harmonized CPTAC3 b24f524d-370a-454e-90a4-425e1d1b0848 9cd348e92e92c223cd41971129216fca {"aliquot_tag": "ALQ_8050ba3e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01361.WXS.T C3N-01361 CCRCC WXS tumor CPT0088760009 CPT0088760009.WholeExome.RP-1303.bam 26847073707 BAM submitted_aligned CPTAC3 405fcf6b-9ca4-4477-82a6-64c940f1875f 6951213b00109577b26c41bf6f718a0b {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01361.WXS.T.hg38 C3N-01361 CCRCC WXS tumor CPT0088760009 fbd6a4c7-253b-4895-83a8-349aae8f0273_gdc_realn.bam 37030414913 BAM harmonized CPTAC3 b8f8182d-2d97-4676-bf1e-85dc7d73c2bc 240df111cc5d46f22106a5b6519d252f {"aliquot_tag": "ALQ_135477a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01362.MethArray.Green.T C3N-01362 CCRCC Methylation_Array tumor CPT0380070009 205555380179_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 7f5f36c9-4382-457c-adc9-688b9690c46b 613ce3525ed9c2ac7fb2cb26dcb223d9 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.MethArray.Red.T C3N-01362 CCRCC Methylation_Array tumor CPT0380070009 205555380179_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 761f17b0-fb6a-4941-9cc1-0e0a072168a4 431126ec81abe42c7aea76d52bbd6806 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.miRNA-Seq.S39_L003_R1.T C3N-01362 CCRCC miRNA-Seq tumor CPT0380070006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACAGTG_S39_L003_R1_001.unaln.bam 251126758 BAM S39_L003_R1 submitted_unaligned CPTAC3 6efbe72b-c2ad-4de2-bc83-c1496bb2917b a7eb5072e8e9c68a6fe91780f2bdcde6 {"aliquot_tag": "ALQ_a9ec0198", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.miRNA-Seq.T.hg38 C3N-01362 CCRCC miRNA-Seq tumor CPT0380070006 f42e626c-a202-44d5-95fd-1f8a49d87ba0_mirnaseq_gdc_realn.bam 263952434 BAM harmonized CPTAC3 3ddf9e9e-8753-42ae-ae7e-8bf97ceeb0ad e327e31e830b18a51c286fdb7a243d1a {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.RNA-Seq.chimeric.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.chimeric.gdc_realn.bam 132218468 BAM chimeric harmonized CPTAC3 2166b7f6-7389-4cec-846f-09dac02950b5 52db04d33f060ce6c8ede231f9d0719b {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.RNA-Seq.genomic.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.genomic.gdc_realn.bam 12846858141 BAM genomic harmonized CPTAC3 e843cd80-8719-4d3e-8b06-133d05e78151 4e57d327ecf4efbc03adc53f2edb3ae0 {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.RNA-Seq.S1_L001_R1.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 6411723357 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 491c360a-853a-45a7-89ef-bf2d4e0c2b95 ffaaa340dcc49de894dcf2b01ebe9dd2 {"aliquot_tag": "ALQ_a9ec0198", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.RNA-Seq.S1_L001_R2.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 7328988483 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 199a7fe0-1412-496f-a1b0-83e313664353 2a8ee627b1825d63aa85fae1b458181a {"aliquot_tag": "ALQ_a9ec0198", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.RNA-Seq.transcriptome.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.transcriptome.gdc_realn.bam 18461796051 BAM transcriptome harmonized CPTAC3 d0b4233e-e098-41a3-9395-e642425fde13 edb2ef304b24b3dc72d70e3cf070850d {"aliquot_tag": "ALQ_a9ec0198", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.WGS.N C3N-01362 CCRCC WGS blood_normal CPT0380340002 CPT0380340002.WholeGenome.RP-2158.bam 26199352816 BAM submitted_aligned CPTAC3 572242fe-3a57-462e-9585-340b62a83d95 0ed94963251ef90463e432105a6b6dd6 {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01362.WGS.N.hg38 C3N-01362 CCRCC WGS blood_normal CPT0380340002 ecf883e0-2dfe-4ae3-b792-55a66cfb6008_wgs_gdc_realn.bam 77722214181 BAM harmonized CPTAC3 8118ada0-0d7e-4ef2-a989-72ddfb396325 faf5fa262e41686997a2da827e113890 {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01362.WGS.T C3N-01362 CCRCC WGS tumor CPT0380070009 CPT0380070009.WholeGenome.RP-2158.bam 37719933914 BAM submitted_aligned CPTAC3 97bd519a-4247-4938-8ed1-067de905540d cbfd917ad6cf6b87c56adb712f815ff1 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.WGS.T.hg38 C3N-01362 CCRCC WGS tumor CPT0380070009 af3bad5c-867a-41a6-bafe-e1dce7ae4d61_wgs_gdc_realn.bam 110602045139 BAM harmonized CPTAC3 9fed8e0d-1905-4605-a135-22e3c96ea76d c83b2b3c3ed9dc5aa82cc46e7a1ddb9b {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.WXS.N C3N-01362 CCRCC WXS blood_normal CPT0380340002 CPT0380340002.WholeExome.RP-1303.bam 24568635578 BAM submitted_aligned CPTAC3 911198d5-baa8-4fdc-9a66-f666357c1171 f650cacd872a8efaae0ec48d8cf5c1aa {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01362.WXS.N.hg38 C3N-01362 CCRCC WXS blood_normal CPT0380340002 ecf883e0-2dfe-4ae3-b792-55a66cfb6008_wxs_gdc_realn.bam 34069538036 BAM harmonized CPTAC3 4b6a513a-4723-4880-8cd4-3613840ad8b6 261d47a7b0e2f7721f28a3045a21ee53 {"aliquot_tag": "ALQ_6fb5cdff", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01362.WXS.T C3N-01362 CCRCC WXS tumor CPT0380070009 CPT0380070009.WholeExome.RP-1303.bam 19522473994 BAM submitted_aligned CPTAC3 ea4f3f4c-2331-40b6-89bb-527d9493a5ac c295cf4de6f422516456ec87be5f31d4 {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01362.WXS.T.hg38 C3N-01362 CCRCC WXS tumor CPT0380070009 af3bad5c-867a-41a6-bafe-e1dce7ae4d61_wxs_gdc_realn.bam 26624832485 BAM harmonized CPTAC3 90c198bd-ace0-47e3-af15-da7f2c59fc4e 4a690c0519ca91b282c4e4a5ca76d1dd {"aliquot_tag": "ALQ_39531c09", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01364.MethArray.Green.T C3N-01364 GBM Methylation_Array tumor CPT0093450009 202234380069_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 ecca7536-c3aa-453c-8c83-a733a30af04b f736989abf28aece67aab2bc0e2a93ab {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.MethArray.Red.T C3N-01364 GBM Methylation_Array tumor CPT0093450009 202234380069_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 9a3a5519-2d30-4b48-a91f-c2b9c11a1f32 27d0ac3b2c365d2c07c36087c889ef2e {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.miRNA-Seq.S48_L007_R1.T C3N-01364 GBM miRNA-Seq tumor CPT0093450006 180828_UNC32-K00270_0112_AHWTLNBBXX_TACAGC_S48_L007_R1_001.unaln.bam 222117710 BAM S48_L007_R1 submitted_unaligned CPTAC3 737ef6ea-a8bb-4ef5-a639-ef4409ed0875 a490d68743ed5d53faa39914f2f47b2b {"aliquot_tag": "ALQ_8c723628", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.miRNA-Seq.T.hg38 C3N-01364 GBM miRNA-Seq tumor CPT0093450006 aee27d9e-7f0b-4d50-b564-a110b782a5f3_mirnaseq_gdc_realn.bam 248199812 BAM harmonized CPTAC3 89629ea7-fa74-4f3f-9261-1c4f3001839a 63aa2be4763a3b675b4bc1ca69d137a8 {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.RNA-Seq.chimeric.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.chimeric.gdc_realn.bam 31298151 BAM chimeric harmonized CPTAC3 374d7f0e-3ce3-4ce2-81d3-8fb94c6f766b a5597233963199f2857ee3c23cbee897 {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.RNA-Seq.genomic.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.genomic.gdc_realn.bam 8512625345 BAM genomic harmonized CPTAC3 28be5f58-b672-4126-92ab-80d1caeb4028 55272da32c40ae312ec6b1dbff80207c {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.RNA-Seq.S2_L008_R1.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R1_001.fastq.gz 4080118644 FASTQ S2_L008_R1 submitted_unaligned CPTAC3 d1a8bc5a-1fee-467d-bd74-2f300eaca110 bacc7e5feb6be40d91fb0d26778b336f {"aliquot_tag": "ALQ_8c723628", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.RNA-Seq.S2_L008_R2.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R2_001.fastq.gz 4324767117 FASTQ S2_L008_R2 submitted_unaligned CPTAC3 8d374973-7198-49c6-a491-e98ca9a8232c c0fb59b6deacc0cbf4418fa909249d5c {"aliquot_tag": "ALQ_8c723628", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.RNA-Seq.transcriptome.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.transcriptome.gdc_realn.bam 10444373272 BAM transcriptome harmonized CPTAC3 cd046c2f-6e86-486c-8a61-3b7c789f9e43 b9e59018154fa1ec07d38fde08ff4439 {"aliquot_tag": "ALQ_8c723628", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.WGS.N C3N-01364 GBM WGS blood_normal CPT0093490002 CPT0093490002.WholeGenome.RP-1303.bam 61440378579 BAM submitted_aligned CPTAC3 cd2bde11-33a6-4e77-b8d5-a0962ecc287a 8af3ae25739af705bbd18bbef1873555 {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01364.WGS.N.hg38 C3N-01364 GBM WGS blood_normal CPT0093490002 49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wgs_gdc_realn.bam 90233355921 BAM harmonized CPTAC3 2e78972e-d40d-49c7-9dea-80a2ae300520 361b5f55940956db458fc13608c8e7f9 {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01364.WGS.T C3N-01364 GBM WGS tumor CPT0093450009 CPT0093450009.WholeGenome.RP-1303.bam 62683113569 BAM submitted_aligned CPTAC3 cbcb9196-153f-45ed-9918-064f813fabea ea6386b8634e466cd6680e3a40b6f2ab {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.WGS.T.hg38 C3N-01364 GBM WGS tumor CPT0093450009 5f6180da-9f43-41a4-ac5b-816dd3297285_wgs_gdc_realn.bam 91034187503 BAM harmonized CPTAC3 44b98b50-87ea-491b-bd05-5fa6650a8350 c24868289973260b71186d38627ab584 {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.WXS.N C3N-01364 GBM WXS blood_normal CPT0093490002 CPT0093490002.WholeExome.RP-1303.bam 59543952160 BAM submitted_aligned CPTAC3 a56dce4b-3468-4126-a23b-156d3a3894ec a38b2c001426d980bd75cb818a1898f4 {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01364.WXS.N.hg38 C3N-01364 GBM WXS blood_normal CPT0093490002 49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wxs_gdc_realn.bam 80186280371 BAM harmonized CPTAC3 c82073b0-cc01-4d02-a498-ec034e1b56d2 b86d6b81447560da119e0512554d419f {"aliquot_tag": "ALQ_4eef1f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01364.WXS.T C3N-01364 GBM WXS tumor CPT0093450009 CPT0093450009.WholeExome.RP-1303.bam 36944728175 BAM submitted_aligned CPTAC3 137a00f2-9c00-4a8c-ac49-ee36b85905ac 50a0bec0e6381644523cda4914df26ae {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01364.WXS.T.hg38 C3N-01364 GBM WXS tumor CPT0093450009 5f6180da-9f43-41a4-ac5b-816dd3297285_wxs_gdc_realn.bam 50361215715 BAM harmonized CPTAC3 a8b76d35-f66a-4040-bfed-be2ece7e3cbf 39b8156354753d5a5e722bc37f59f2bc {"aliquot_tag": "ALQ_1ccd2bb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01365.miRNA-Seq.A.hg38 C3N-01365 GBM miRNA-Seq tissue_normal CPT0402900011 b79e1251-ab72-47c9-91be-536e48c6e2ca_mirnaseq_gdc_realn.bam 265442536 BAM harmonized CPTAC3 f0ef482a-6b6f-4527-a97a-1268cd13d733 2ee52206e6b194443fc499b583ca2165 {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.miRNA-Seq.S40_L005_R1.A C3N-01365 GBM miRNA-Seq tissue_normal CPT0402900011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCGGCA_S40_L005_R1_001.unaln.bam 246506867 BAM S40_L005_R1 submitted_unaligned CPTAC3 641fbd62-5be4-4790-be99-c487e65764c9 ae842e8ac0744f2918cc209417cc970e {"aliquot_tag": "ALQ_9ba74ff7", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.RNA-Seq.chimeric.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.chimeric.gdc_realn.bam 465933722 BAM chimeric harmonized CPTAC3 b0333faf-0347-4a18-8543-1218e0bb0ee2 42ceea8c22ade86db1b56ff9e4087ebc {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.RNA-Seq.genomic.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.genomic.gdc_realn.bam 10267863597 BAM genomic harmonized CPTAC3 406ad337-9579-4e48-aa51-17aa1802ab23 0a69c6d928c47f54d9221cd5ac3bd552 {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.RNA-Seq.S11_L003_R1.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 9936d4a4-b553-40fc-9739-16e57a11ecee 37130b0f844ded68d4f593d19a753a9a {"aliquot_tag": "ALQ_9ba74ff7", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.RNA-Seq.S11_L003_R2.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R2_001.fastq.gz 4948579616 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 10b7380d-90bc-47db-8580-ec64ccc6dea6 57767075694365df86e471fd213c90ea {"aliquot_tag": "ALQ_9ba74ff7", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.RNA-Seq.transcriptome.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.transcriptome.gdc_realn.bam 11140339091 BAM transcriptome harmonized CPTAC3 e89e1fb8-0d3d-44b9-86d1-4547baf79bce 6539318eb2741341db83e39b7ee48bc3 {"aliquot_tag": "ALQ_9ba74ff7", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.WXS.A C3N-01365 GBM WXS tissue_normal CPT0402900007 CPT0402900007.WholeExome.RP-1303.bam 30135454971 BAM submitted_aligned CPTAC3 ca63dc64-16bb-43bd-ad1b-55236ecc7241 925f49ae57dbc835d6842aa63cf0a5cd {"aliquot_tag": "ALQ_6bdfdb83", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01365.WXS.A.hg38 C3N-01365 GBM WXS tissue_normal CPT0402900007 707224bf-dd01-488d-9e23-2abc8477f15c_wxs_gdc_realn.bam 41380776856 BAM harmonized CPTAC3 a1dacd7d-6b75-4fe9-a2b2-3b5496d2aa71 98315bbd041cf3e3489c84afca803d7a {"aliquot_tag": "ALQ_6bdfdb83", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01365.WXS.N C3N-01365 GBM WXS blood_normal CPT0403010002 CPT0403010002.WholeExome.RP-1303.bam 26391979122 BAM submitted_aligned CPTAC3 4aefb216-cefd-4be3-8652-8da7bba9223d 694940411cff19a50f1bc3bb695e88ff {"aliquot_tag": "ALQ_a7ad5cc0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01365.WXS.N.hg38 C3N-01365 GBM WXS blood_normal CPT0403010002 5e32c5e9-6286-46a1-8780-4ed65d13fde0_wxs_gdc_realn.bam 36291423036 BAM harmonized CPTAC3 02d51bfb-91b3-414c-9ac7-7bb7adc737ab c2485e185105079eec110b578ae21994 {"aliquot_tag": "ALQ_a7ad5cc0", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01366.MethArray.Green.T C3N-01366 GBM Methylation_Array tumor CPT0093510009 202234380017_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7c541244-5c87-44ab-b69f-ad1d3e1fc770 90390608fdbc6af51694b5a792a05dc4 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.MethArray.Red.T C3N-01366 GBM Methylation_Array tumor CPT0093510009 202234380017_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 4346ab8b-8652-4667-a4fb-2598604cf4f2 e3ddb6e752afa652ac2b4bad07fd325f {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.miRNA-Seq.S32_L007_R1.T C3N-01366 GBM miRNA-Seq tumor CPT0093510006 180828_UNC32-K00270_0112_AHWTLNBBXX_TATAAT_S32_L007_R1_001.unaln.bam 274027244 BAM S32_L007_R1 submitted_unaligned CPTAC3 cf17b84e-1ce1-4e9c-9cc5-8ec1d6093971 47c806f5ed8d4909949e51e2d76d23db {"aliquot_tag": "ALQ_b2ae434d", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.miRNA-Seq.T.hg38 C3N-01366 GBM miRNA-Seq tumor CPT0093510006 d3050d4d-543c-40af-8e6e-569c0951f14a_mirnaseq_gdc_realn.bam 307539345 BAM harmonized CPTAC3 5f2fbbfe-cb87-4eda-9cd1-43d9e7aadd7f 912c0fce93fb09c02a95f68327e2b30b {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.RNA-Seq.chimeric.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.chimeric.gdc_realn.bam 26747850 BAM chimeric harmonized CPTAC3 02157e1b-8962-402a-a786-514b2fca5cc4 21dc348fd9b671fe92ed3db5a4ec793f {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.RNA-Seq.genomic.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.genomic.gdc_realn.bam 8414599321 BAM genomic harmonized CPTAC3 196012c7-1e92-43c6-b838-674e977a5ed8 b94ff99904cecc6b606837cbad1d6b09 {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.RNA-Seq.S1_L008_R1.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R1_001.fastq.gz 3842996129 FASTQ S1_L008_R1 submitted_unaligned CPTAC3 2473c3e8-c5b3-4cd7-badc-e7451a85bcd0 0b3f0bdacd824681afbdbbeb0c732fc8 {"aliquot_tag": "ALQ_b2ae434d", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.RNA-Seq.S1_L008_R2.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R2_001.fastq.gz 4130353029 FASTQ S1_L008_R2 submitted_unaligned CPTAC3 117c36a0-7e93-4b90-b819-0d8db6787d03 e29ed65fb41ee8b85f1a01c0188b7872 {"aliquot_tag": "ALQ_b2ae434d", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.RNA-Seq.transcriptome.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.transcriptome.gdc_realn.bam 11203814238 BAM transcriptome harmonized CPTAC3 68da9046-783a-4be4-9546-b1c20ce43637 68d0c532b73e20ccbf99d0a8a2f56048 {"aliquot_tag": "ALQ_b2ae434d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.WGS.N C3N-01366 GBM WGS blood_normal CPT0093540002 CPT0093540002.WholeGenome.RP-1303.bam 68247624433 BAM submitted_aligned CPTAC3 4fa37f8f-a8ab-49fd-bbf9-baf2fed74d57 8451069dbe86fe4f435baae561c82049 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01366.WGS.N.hg38 C3N-01366 GBM WGS blood_normal CPT0093540002 dc744f87-3e3b-4eb1-b7de-ab743ef63880_wgs_gdc_realn.bam 101811273944 BAM harmonized CPTAC3 64768550-ac2f-4b5c-84ea-37014a8c1af4 b07381fca7f2ab78c47ecf6c24b4a035 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01366.WGS.T C3N-01366 GBM WGS tumor CPT0093510009 CPT0093510009.WholeGenome.RP-1303.bam 69760247843 BAM submitted_aligned CPTAC3 67083540-a965-4bc5-824d-240e220aa788 c49674b76cda10109db6250dd367fc1f {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.WGS.T.hg38 C3N-01366 GBM WGS tumor CPT0093510009 bf7d406f-320d-4fc8-ba31-5d5779b11a18_wgs_gdc_realn.bam 104729974826 BAM harmonized CPTAC3 aedd51d0-330d-4780-b6fc-9ba566274980 f46bf4d2c6b386aabf0b31ebc6f19360 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.WXS.N C3N-01366 GBM WXS blood_normal CPT0093540002 CPT0093540002.WholeExome.RP-1303.bam 32338666677 BAM submitted_aligned CPTAC3 0e3ad518-68b7-448b-8bd0-a07c351a8e87 5695208c0fa13829b04ed75dc6ad3095 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01366.WXS.N.hg38 C3N-01366 GBM WXS blood_normal CPT0093540002 dc744f87-3e3b-4eb1-b7de-ab743ef63880_wxs_gdc_realn.bam 43877654819 BAM harmonized CPTAC3 79890e10-5e89-4154-a9dc-af54dd220390 cbaa98606ea7a0be152f1d95ce2100d7 {"aliquot_tag": "ALQ_7d230824", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01366.WXS.T C3N-01366 GBM WXS tumor CPT0093510009 CPT0093510009.WholeExome.RP-1303.bam 35753489535 BAM submitted_aligned CPTAC3 5dbaa507-8f20-4fef-b71b-b129177ae85f 902695836c86c6018dc98493a2da9c40 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01366.WXS.T.hg38 C3N-01366 GBM WXS tumor CPT0093510009 bf7d406f-320d-4fc8-ba31-5d5779b11a18_wxs_gdc_realn.bam 48519000756 BAM harmonized CPTAC3 07b63c53-93d2-498b-bf25-26786af13839 2b96fd6bb5c200b0cf0883f420cfff90 {"aliquot_tag": "ALQ_22115edc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.MethArray.Green.T C3N-01367 GBM Methylation_Array tumor CPT0093550012 202234370086_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d77c0b9b-0928-4fe9-b99d-1ebe4946f033 fa0b594364ec68ca02f4aaa597a60bd3 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.MethArray.Red.T C3N-01367 GBM Methylation_Array tumor CPT0093550012 202234370086_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 671e34d0-805a-4fbd-9367-886086546d8f 60e155fe144ffe31cde987312339cd09 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.miRNA-Seq.S31_L007_R1.T C3N-01367 GBM miRNA-Seq tumor CPT0093550006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCATTC_S31_L007_R1_001.unaln.bam 191928365 BAM S31_L007_R1 submitted_unaligned CPTAC3 25274363-c7ef-47e5-9f28-4d9e6273018c 08b7c239f4d075d50c200a4ac7b15bc7 {"aliquot_tag": "ALQ_472ee58d", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.miRNA-Seq.T.hg38 C3N-01367 GBM miRNA-Seq tumor CPT0093550006 5eb0a705-1018-48a5-8f5e-6ff6c652b0a8_mirnaseq_gdc_realn.bam 219936662 BAM harmonized CPTAC3 7877587b-72b9-4442-bc28-785a58393dc6 3e3414878dd2c3d87e39360ceed5d6b0 {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.RNA-Seq.chimeric.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.chimeric.gdc_realn.bam 30832128 BAM chimeric harmonized CPTAC3 218d4b57-9cde-4523-bc3e-071864f1dcc6 6beaf95c607168def36becaaf636659d {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.RNA-Seq.genomic.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.genomic.gdc_realn.bam 8710045745 BAM genomic harmonized CPTAC3 f66cd985-2682-48ba-9eb4-b9204b05b71d 82239b0f8f6542559164f4a9a8dc13f4 {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.RNA-Seq.S4_L007_R1.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R1_001.fastq.gz 3870494330 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 922258c7-88bc-4d03-8018-5070f9061da4 a26c3bc9481624b6817d89cf69fc18f7 {"aliquot_tag": "ALQ_472ee58d", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.RNA-Seq.S4_L007_R2.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R2_001.fastq.gz 4185337784 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 884c747b-7ece-4152-89ed-018009adab0f 324ac325ecb1d3fe36a89afbe457b59f {"aliquot_tag": "ALQ_472ee58d", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.RNA-Seq.transcriptome.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.transcriptome.gdc_realn.bam 9249519225 BAM transcriptome harmonized CPTAC3 c2770a94-e199-4ea6-ac3e-a1acd13a613c 7350fa4745369d49467940d0844c37cd {"aliquot_tag": "ALQ_472ee58d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.WGS.N C3N-01367 GBM WGS blood_normal CPT0093570002 CPT0093570002.WholeGenome.RP-1303.bam 77949245810 BAM submitted_aligned CPTAC3 1c41ed2c-df2c-4cb8-b485-91f91839a69e 256ebb8a5ad6ec42249e6f3496b9da73 {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01367.WGS.N.hg38 C3N-01367 GBM WGS blood_normal CPT0093570002 48c74137-31a5-45dc-a63f-026614b79af0_wgs_gdc_realn.bam 116424006952 BAM harmonized CPTAC3 cd8825ce-40b7-4842-b8f5-227d168734d8 72a8fc07d6c9c0d3fe43e7fdb8c1c3ee {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01367.WGS.T C3N-01367 GBM WGS tumor CPT0093550012 CPT0093550012.WholeGenome.RP-1303.bam 59568704641 BAM submitted_aligned CPTAC3 cec9a38a-8a61-433a-a8db-32ee55be862e f43677dac32dba7e8d2a1a68172ce1bb {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.WGS.T.hg38 C3N-01367 GBM WGS tumor CPT0093550012 cf8b37ba-cabe-4e3b-9c0d-086725757e17_wgs_gdc_realn.bam 86693276819 BAM harmonized CPTAC3 fc340836-b124-4f46-b854-676386877c08 c55bd7003647ba7ebdb71d4594e679c7 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.WXS.N C3N-01367 GBM WXS blood_normal CPT0093570002 CPT0093570002.WholeExome.RP-1303.bam 61387633105 BAM submitted_aligned CPTAC3 ac02dca8-2b07-4a9a-91ab-c6be9ec1c43f 49057080cf059a208c5316e809b1d486 {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01367.WXS.N.hg38 C3N-01367 GBM WXS blood_normal CPT0093570002 48c74137-31a5-45dc-a63f-026614b79af0_wxs_gdc_realn.bam 83131092335 BAM harmonized CPTAC3 d1979603-e84c-47e7-b227-d9b43471d5c3 f76d8950de201088ad4256a97e66f275 {"aliquot_tag": "ALQ_3a8372f4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01367.WXS.T C3N-01367 GBM WXS tumor CPT0093550012 CPT0093550012.WholeExome.RP-1303.bam 33246788530 BAM submitted_aligned CPTAC3 1034e18a-de73-4000-bc07-771f83086ff3 c5a4cf463cb87a8a893a725067161f96 {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01367.WXS.T.hg38 C3N-01367 GBM WXS tumor CPT0093550012 cf8b37ba-cabe-4e3b-9c0d-086725757e17_wxs_gdc_realn.bam 45085165540 BAM harmonized CPTAC3 e47a1240-b6d9-4f8a-90bf-2111928826d6 7633b4aad463b1b22b2f289e79a80acc {"aliquot_tag": "ALQ_595810d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.MethArray.Green.T C3N-01368 GBM Methylation_Array tumor CPT0093590009 202234380061_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 02fb2fd6-e110-4bfe-8d1f-2d28db83f5b7 5dff0167bd8cb1ba9dc3a5c5ac734bd6 {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.MethArray.Red.T C3N-01368 GBM Methylation_Array tumor CPT0093590009 202234380061_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 47bcd28f-ae87-46ac-92a6-3c4b85f7915f 063ce8ded87946f3ea6b50eed652cae8 {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.miRNA-Seq.S30_L007_R1.T C3N-01368 GBM miRNA-Seq tumor CPT0093590006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCCCGA_S30_L007_R1_001.unaln.bam 230268306 BAM S30_L007_R1 submitted_unaligned CPTAC3 c0246dbb-bd76-4554-9aeb-40abf9f44dd6 d5c015d331cb063a6a22238affa86175 {"aliquot_tag": "ALQ_82de088c", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.miRNA-Seq.T.hg38 C3N-01368 GBM miRNA-Seq tumor CPT0093590006 2a9f4bf8-04c1-4045-9d04-1ba3e5a4261a_mirnaseq_gdc_realn.bam 262154236 BAM harmonized CPTAC3 304db52c-ed3d-4ebf-baef-7139e3b3e536 747096d54c0b398c5902de9541e48cda {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.RNA-Seq.chimeric.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.chimeric.gdc_realn.bam 41718597 BAM chimeric harmonized CPTAC3 6a985870-cc55-4b01-bb07-1a750c17480f 21e4665fdcd00545971bdc706f2bf12b {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.RNA-Seq.genomic.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.genomic.gdc_realn.bam 9310763112 BAM genomic harmonized CPTAC3 4e4d4d65-4a45-4eb7-ade9-565b5e2fdbf4 4b111434811b3537e87f3707f6694be6 {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.RNA-Seq.S21_L007_R1.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R1_001.fastq.gz 4328230752 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 f630fa32-ae23-4686-a8ae-a15d6db483cd 9414bd5c38d0445d159fa939c83deb57 {"aliquot_tag": "ALQ_82de088c", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.RNA-Seq.S21_L007_R2.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R2_001.fastq.gz 4620982138 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 46c53c9c-5e19-4deb-ac15-14e198cb6031 57637139a82acd5bf8f27785319ad766 {"aliquot_tag": "ALQ_82de088c", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.RNA-Seq.transcriptome.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.transcriptome.gdc_realn.bam 10695617534 BAM transcriptome harmonized CPTAC3 7e793277-30a7-4d71-8a13-cf84a29ff7dd 1aa6b183c55ea5291ffec23b1d8b40c7 {"aliquot_tag": "ALQ_82de088c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.WGS.N C3N-01368 GBM WGS blood_normal CPT0093620002 CPT0093620002.WholeGenome.RP-1303.bam 66354102976 BAM submitted_aligned CPTAC3 f02a74f7-a975-43d2-8466-61e3464fec10 bd5552664e130bf180fab575c09b674c {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01368.WGS.N.hg38 C3N-01368 GBM WGS blood_normal CPT0093620002 6d5370f7-a363-4450-bf90-ade4abfee224_wgs_gdc_realn.bam 98468146967 BAM harmonized CPTAC3 ac39fb69-64aa-44e4-b308-e41df3a974eb 8243352d3007466757a15c62c9ef79dc {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01368.WGS.T C3N-01368 GBM WGS tumor CPT0093590009 CPT0093590009.WholeGenome.RP-1303.bam 56590210185 BAM submitted_aligned CPTAC3 122929ea-36ce-4e70-aa5a-6e02eb0c0205 4a852f3902950b7699c22f22c00eb13c {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.WGS.T.hg38 C3N-01368 GBM WGS tumor CPT0093590009 c2ed3978-37c5-4c6b-b61e-91ab4856698a_wgs_gdc_realn.bam 83200402994 BAM harmonized CPTAC3 bf41df48-ba05-4af3-8835-3c17bbd5236e 16ef9796cb57a0586202493529f74b5f {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.WXS.N C3N-01368 GBM WXS blood_normal CPT0093620002 CPT0093620002.WholeExome.RP-1303.bam 37977814163 BAM submitted_aligned CPTAC3 0e42a39c-9fc4-402e-bff6-213d72ac764b 53e5371675e6739e004bf2e3c5111c4e {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01368.WXS.N.hg38 C3N-01368 GBM WXS blood_normal CPT0093620002 6d5370f7-a363-4450-bf90-ade4abfee224_wxs_gdc_realn.bam 52458157496 BAM harmonized CPTAC3 9d951832-79fd-4c8e-b844-66626010bc2c 3b027976b09a86f530da18f5a1a94b0f {"aliquot_tag": "ALQ_74f78f2a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01368.WXS.T C3N-01368 GBM WXS tumor CPT0093590009 CPT0093590009.WholeExome.RP-1303.bam 29671786944 BAM submitted_aligned CPTAC3 bd6d1d94-86c8-41ee-a889-0af85f093810 bca15a4515d79354fdfaa45840aac779 {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01368.WXS.T.hg38 C3N-01368 GBM WXS tumor CPT0093590009 c2ed3978-37c5-4c6b-b61e-91ab4856698a_wxs_gdc_realn.bam 40906096750 BAM harmonized CPTAC3 6b8e115e-923e-48e1-9fe5-a56ae20745f8 d6c3d2333f01d57ff2818fc2e1a5746d {"aliquot_tag": "ALQ_1261151d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.MethArray.Green.T C3N-01369 GBM Methylation_Array tumor CPT0162020006 203027390118_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 acb05fe8-5761-4226-913a-7d37ba37e737 014652e566c94f7caf76e56b26f0d286 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.MethArray.Red.T C3N-01369 GBM Methylation_Array tumor CPT0162020006 203027390118_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 bd801005-15ca-43a5-b630-99ab8cc9c0bf 53951e7c30c38f0d22f21e02e10a5565 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.miRNA-Seq.S29_L002_R1.T C3N-01369 GBM miRNA-Seq tumor CPT0162020009 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 249909268 BAM S29_L002_R1 submitted_unaligned CPTAC3 4feafe9e-3f1a-4f34-875b-1e4462857a7a cfa2d1b964f660abbd733f412dcfe622 {"aliquot_tag": "ALQ_5d50b8e4", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.miRNA-Seq.T.hg38 C3N-01369 GBM miRNA-Seq tumor CPT0162020009 fb2fe162-6142-457b-86e9-a0be878100e9_mirnaseq_gdc_realn.bam 294909764 BAM harmonized CPTAC3 3f90d054-764d-43f2-94c7-d2adcf799eb9 29b55aa5de1d0461cd57e48b51e7043f {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.RNA-Seq.chimeric.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.chimeric.gdc_realn.bam 130465674 BAM chimeric harmonized CPTAC3 37939824-ab74-4c2f-99e4-63c7fd4e681c 1f923eca40746273616647da4700e242 {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.RNA-Seq.genomic.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.genomic.gdc_realn.bam 6882916972 BAM genomic harmonized CPTAC3 f596ea64-0577-437c-bcb2-8c6257d1a6dd 297e37f98c33c2ecd93371c96143b693 {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.RNA-Seq.S16_L004_R1.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 3010240413 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 3ef18597-3dc6-4368-9843-ca003ca75acf 0bf983f73f6cc0dafad01a76b8d5ed30 {"aliquot_tag": "ALQ_5d50b8e4", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.RNA-Seq.S16_L004_R2.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 3290785428 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 3e35295e-8294-4252-9d2b-be82bacc86ba 431c3b4007bb9520c5b8bc40c31815a7 {"aliquot_tag": "ALQ_5d50b8e4", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.RNA-Seq.transcriptome.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.transcriptome.gdc_realn.bam 8846013406 BAM transcriptome harmonized CPTAC3 0ad6606d-942e-4acb-b13d-18f8c432e8fc b3b45e457f4fe12085e7566929d8a757 {"aliquot_tag": "ALQ_5d50b8e4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.WGS.N C3N-01369 GBM WGS blood_normal CPT0162040002 CPT0162040002.WholeGenome.RP-1303.bam 63101405834 BAM submitted_aligned CPTAC3 c17f1af8-b88f-427a-8c11-d2fdc267ff83 dc5d535f6dd81140dd614e3d0f2bf52f {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01369.WGS.N.hg38 C3N-01369 GBM WGS blood_normal CPT0162040002 72e8c076-6bc4-4274-b90c-188820d472a1_wgs_gdc_realn.bam 92159766724 BAM harmonized CPTAC3 00a6c8d6-d21a-47d0-860b-af54979354bf 1389aeffbf8bc566e7955ff13d1f5f83 {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01369.WGS.T C3N-01369 GBM WGS tumor CPT0162020006 CPT0162020006.WholeGenome.RP-1303.bam 64549937121 BAM submitted_aligned CPTAC3 6ca8ece8-2ec1-4c98-a705-85d47cf7e70f 9b8100b4faea58342c19f2c65b254e04 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.WGS.T.hg38 C3N-01369 GBM WGS tumor CPT0162020006 b97f843a-68a7-430f-b277-93c55b7f4b76_wgs_gdc_realn.bam 93697537744 BAM harmonized CPTAC3 b65a532f-36d7-43e2-b46d-dc4f9d6ebade 39a301dfda45f6d87a52ea6ae9052dbc {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.WXS.N C3N-01369 GBM WXS blood_normal CPT0162040002 CPT0162040002.WholeExome.RP-1303.bam 28457151997 BAM submitted_aligned CPTAC3 51ebf434-8a15-4a7c-92d0-e41f92f9f5c2 082ff03b961b58fe38b9fef60905e861 {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01369.WXS.N.hg38 C3N-01369 GBM WXS blood_normal CPT0162040002 72e8c076-6bc4-4274-b90c-188820d472a1_wxs_gdc_realn.bam 38579615783 BAM harmonized CPTAC3 c5dd898e-88c5-49b4-9ac7-439751ae8efa 92b8384348db0a652946f41f5259e765 {"aliquot_tag": "ALQ_45c294cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01369.WXS.T C3N-01369 GBM WXS tumor CPT0162020006 CPT0162020006.WholeExome.RP-1303.bam 18141477488 BAM submitted_aligned CPTAC3 b020ef3e-ebf5-4a61-bfd6-b9fa78bd3455 77b44887f2dda72ed058d8bdbef2bf30 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01369.WXS.T.hg38 C3N-01369 GBM WXS tumor CPT0162020006 b97f843a-68a7-430f-b277-93c55b7f4b76_wxs_gdc_realn.bam 25394906825 BAM harmonized CPTAC3 b89dd1e7-fcaa-4792-98de-8e2cc70a211e 270f9fd534e09e3f68205502d37d3751 {"aliquot_tag": "ALQ_cdefa575", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.MethArray.Green.T C3N-01375 PDA Methylation_Array tumor CPT0088180010 202176300039_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3546b2b5-aacd-4d5d-8a51-8126e12649a2 aee60fce591936010bee985677927601 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.MethArray.Red.T C3N-01375 PDA Methylation_Array tumor CPT0088180010 202176300039_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 026d56e3-e7b7-4dc7-9605-9408925e4fca c0abca957d67db3b8759c69141379f9f {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.miRNA-Seq.S18_L008_R1.T C3N-01375 PDA miRNA-Seq tumor CPT0088180007 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L008_R1_001.unaln.bam 204619641 BAM S18_L008_R1 submitted_unaligned CPTAC3 c731a132-c70d-4c56-a21b-40271cafe848 b28a9af548dc3f81c4107ff4987fc445 {"aliquot_tag": "ALQ_9d8507d8", "sample": "S18", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.miRNA-Seq.T.hg38 C3N-01375 PDA miRNA-Seq tumor CPT0088180007 e438227a-2590-40a3-8920-50bd71840366_mirnaseq_gdc_realn.bam 225484135 BAM harmonized CPTAC3 fe30ed2d-bbbe-442e-86b9-277fc2493de7 679e206b82c6fbf7d41f6d589379fa8f {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.RNA-Seq.chimeric.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.chimeric.gdc_realn.bam 31874418 BAM chimeric harmonized CPTAC3 5b1ac298-4889-4887-8b66-00f7d84a30d3 2be88d9239944951590b1cb0acde9293 {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.RNA-Seq.genomic.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.genomic.gdc_realn.bam 7817022860 BAM genomic harmonized CPTAC3 a4e8bb9f-4141-42fa-9e92-b23b02ac3cc7 44b3a3fbeef41ce70ff327e04a7505b0 {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.RNA-Seq.S5_L005_R1.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R1_001.fastq.gz 4079792609 FASTQ S5_L005_R1 submitted_unaligned CPTAC3 d647436f-5e41-4bef-a100-5c5cf00a282d 4a7e3268057559d99a0cb3852b419780 {"aliquot_tag": "ALQ_9d8507d8", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.RNA-Seq.S5_L005_R2.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R2_001.fastq.gz 4393615083 FASTQ S5_L005_R2 submitted_unaligned CPTAC3 33825407-09bb-4634-9037-685c0f893fc2 8d5e28f7553a0fcebe24664121d3ca2d {"aliquot_tag": "ALQ_9d8507d8", "sample": "S5", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.RNA-Seq.transcriptome.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.transcriptome.gdc_realn.bam 12168102588 BAM transcriptome harmonized CPTAC3 006e4428-28f0-4ae1-a348-df8392a35b08 5b9aa7835a41c04767f1d62e93bd9b4d {"aliquot_tag": "ALQ_9d8507d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WGS.N C3N-01375 PDA WGS blood_normal CPT0088220002 CPT0088220002.WholeGenome.RP-1303.bam 71516347998 BAM submitted_aligned CPTAC3 ffa0007d-98ff-4e92-8923-3e7ec2ba18d6 febe387b671bf57219c568baa9edb538 {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01375.WGS.N.hg38 C3N-01375 PDA WGS blood_normal CPT0088220002 70741c40-f272-4621-9043-296dbe5d6d26_gdc_realn.bam 105470647804 BAM harmonized CPTAC3 74338bba-fc03-4ca2-ab99-a60e1688c9c4 71e0b5c83a2b74f82cd2e3a140c97d3c {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01375.WGS.T C3N-01375 PDA WGS tumor CPT0088180010_1 CPT0088180010_1.WholeGenome.RP-1303.bam 118698258894 BAM submitted_aligned CPTAC3 3913e319-06c3-43bf-9120-9330b67e1349 0074e0082d2dfffcda0be65b92702c7c {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WGS.T C3N-01375 PDA WGS tumor CPT0088180010 CPT0088180010.WholeGenome.RP-1303.bam 71250595995 BAM submitted_aligned CPTAC3 54ae8ae9-a7b8-4171-a21f-0d65ccb40e86 ac0bd14da2a8a2e1a2fdce09d1c03692 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WGS.T.hg38 C3N-01375 PDA WGS tumor CPT0088180010_1 fb705e01-bb41-414c-a9c3-f3ac72c0aa4e_wgs_gdc_realn.bam 174570967767 BAM harmonized CPTAC3 f5357a10-f5e2-4372-ad47-71e415933515 10f9af9274f483dadadf66ce1e73b81d {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WGS.T.hg38 C3N-01375 PDA WGS tumor CPT0088180010 2467c285-0fcc-4eee-890a-9049ae7f0242_gdc_realn.bam 106474618900 BAM harmonized CPTAC3 f028c564-cae8-40c1-9acd-27e6674b8d8d ff858f187c6df56ceaef176291321548 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WXS.N C3N-01375 PDA WXS blood_normal CPT0088220002 CPT0088220002.WholeExome.RP-1303.bam 31991482556 BAM submitted_aligned CPTAC3 4e5407f5-96ec-4f2d-8c71-c7263980769b 46c31b494488c55c1e39dd78cd775071 {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01375.WXS.N.hg38 C3N-01375 PDA WXS blood_normal CPT0088220002 70741c40-f272-4621-9043-296dbe5d6d26_gdc_realn.bam 43694107832 BAM harmonized CPTAC3 e5f40e12-587d-4350-ae8f-477250c19e45 8caace52c41ac7004dd15e86f96603dc {"aliquot_tag": "ALQ_21cb9958", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01375.WXS.T C3N-01375 PDA WXS tumor CPT0088180010_1 CPT0088180010_1.WholeExome.RP-1303.bam 48859202623 BAM submitted_aligned CPTAC3 2598104a-3588-42c2-a51f-0393f237e396 904c4dd4231e57cf9de18f8fff745daa {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WXS.T C3N-01375 PDA WXS tumor CPT0088180010 CPT0088180010.WholeExome.RP-1303.bam 25240613953 BAM submitted_aligned CPTAC3 feba0aa6-2046-42bb-bdc0-016501383c9a 221d00ac04adab47a224836f77e2c46b {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WXS.T.hg38 C3N-01375 PDA WXS tumor CPT0088180010_1 fb705e01-bb41-414c-a9c3-f3ac72c0aa4e_wxs_gdc_realn.bam 67073272324 BAM harmonized CPTAC3 024acf6b-8c63-45eb-b3a9-d6cf24bda035 c401561a544a7dad05b0c24aa3cf3fa0 {"aliquot_tag": "ALQ_4752658f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01375.WXS.T.hg38 C3N-01375 PDA WXS tumor CPT0088180010 2467c285-0fcc-4eee-890a-9049ae7f0242_gdc_realn.bam 35091406033 BAM harmonized CPTAC3 dd1a49b4-9824-41d8-8d2b-93aec7e95245 65181a8cbe57e741a301f0e4c7849243 {"aliquot_tag": "ALQ_1afaa33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01378.ANN_8b796960.MethArray.Green.T C3N-01378 PDA Methylation_Array tumor CPT0088230009 202178770100_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 867c38e1-6ed5-4b29-8fcc-3a8ef4351e84 be6dc24f20eba4625d47e1a882624d12 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.ANN_8b796960.MethArray.Red.T C3N-01378 PDA Methylation_Array tumor CPT0088230009 202178770100_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 7909e64f-a78c-4750-a274-cfb91b95b10c f2d8f0655d66b4779adabd00bdd80e47 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.ANN_8b796960.WGS.T C3N-01378 PDA WGS tumor CPT0088230009 CPT0088230009.WholeGenome.RP-1303.bam 79764801469 BAM submitted_aligned CPTAC3 bd8070eb-198c-4037-ad29-8a6fec9e03c9 dcb8c3d35e94a6fe5b004a60311aac99 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.ANN_8b796960.WGS.T.hg38 C3N-01378 PDA WGS tumor CPT0088230009 84850888-21a8-4c8a-a504-3cb5e3fcd783_gdc_realn.bam 121356054512 BAM harmonized CPTAC3 75e85168-36a6-4538-8bae-390321b7e733 0321ad8c601bbff0f1e98b4a6f7363c8 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.ANN_8b796960.WXS.T C3N-01378 PDA WXS tumor CPT0088230009 CPT0088230009.WholeExome.RP-1303.bam 34800506371 BAM submitted_aligned CPTAC3 685e90a9-edeb-40fd-ae1f-e79acc5d8ab8 653682e65ab6d1738da65eee8de6fab4 {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.ANN_8b796960.WXS.T.hg38 C3N-01378 PDA WXS tumor CPT0088230009 84850888-21a8-4c8a-a504-3cb5e3fcd783_gdc_realn.bam 47708763668 BAM harmonized CPTAC3 8447d016-6a3f-4659-9f42-5775840f6ca4 f8fdb5836c3a62d6f924e43d95c4250d {"aliquot_tag": "ANN_8b796960", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.miRNA-Seq.S16_L008_R1.T C3N-01378 PDA miRNA-Seq tumor CPT0088230006 181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L008_R1_001.unaln.bam 241539795 BAM S16_L008_R1 submitted_unaligned CPTAC3 a4bffd09-4a25-475b-af16-2b83241056c4 42d0ebbb76926653eb28353b7c20d1bb {"aliquot_tag": "ALQ_1bc674f1", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.miRNA-Seq.T.hg38 C3N-01378 PDA miRNA-Seq tumor CPT0088230006 c637b37f-b474-4c0d-b7cf-91784955aef4_mirnaseq_gdc_realn.bam 264907202 BAM harmonized CPTAC3 5f667b93-d98e-4c2c-958a-4c793d0d5556 de75ca606c81ae3037fb5db05e684248 {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.REP_7cb76a7c.WXS.T C3N-01378 PDA WXS tumor CPT0088230009_1 CPT0088230009_1.WholeExome.RP-1303.bam 56826636253 BAM submitted_aligned CPTAC3 fd65b6f1-a645-4c90-a7af-3861bc88a086 974477388fe548de4f9ba08aa147f544 {"aliquot_tag": "REP_7cb76a7c", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.REP_7cb76a7c.WXS.T.hg38 C3N-01378 PDA WXS tumor CPT0088230009_1 5c5c012e-7eed-4f0d-bc77-1f9d3b74c574_wxs_gdc_realn.bam 77631328206 BAM harmonized CPTAC3 6822a588-19f2-42a7-94c8-7860778994db ac10041334f6105ff84f00ae1a9b0ff9 {"aliquot_tag": "REP_7cb76a7c", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.RNA-Seq.chimeric.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.chimeric.gdc_realn.bam 27870489 BAM chimeric harmonized CPTAC3 22abe3f7-5962-4a00-a660-73113685e25a fd532874f816c53e30675b976ccd2238 {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.RNA-Seq.genomic.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.genomic.gdc_realn.bam 8173233722 BAM genomic harmonized CPTAC3 011a5173-7f36-4266-a398-e0b25fa1ca2d 049afc3dc7e11d5059c630554031c20d {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.RNA-Seq.S14_L005_R1.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R1_001.fastq.gz 3535340645 FASTQ S14_L005_R1 submitted_unaligned CPTAC3 1f3641e2-c34d-4144-b61d-c5fa1b09ac2d 9adf95f219ad47df1197f5021398979e {"aliquot_tag": "ALQ_1bc674f1", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.RNA-Seq.S14_L005_R2.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R2_001.fastq.gz 3778168162 FASTQ S14_L005_R2 submitted_unaligned CPTAC3 1c52e376-7d8a-42f4-b736-40f51042129f e75ee4516515fc4069d68b8072eeb678 {"aliquot_tag": "ALQ_1bc674f1", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.RNA-Seq.transcriptome.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.transcriptome.gdc_realn.bam 10376676143 BAM transcriptome harmonized CPTAC3 c8c29822-8b74-42cd-8c48-3fe60e2eed19 2051a02a4e57341f3e8b22889960ab55 {"aliquot_tag": "ALQ_1bc674f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01378.WGS.N C3N-01378 PDA WGS blood_normal CPT0088250002 CPT0088250002.WholeGenome.RP-1303.bam 70584946865 BAM submitted_aligned CPTAC3 d9501b60-9542-4bca-9c9a-cdd731dd7538 1c3ebfbbb637535ba7402765338b817d {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01378.WGS.N.hg38 C3N-01378 PDA WGS blood_normal CPT0088250002 5c4b90b6-5f34-4f61-8ecc-ea373e4b3cb4_gdc_realn.bam 104923924743 BAM harmonized CPTAC3 4b7aae30-2635-416a-88f7-f909aa1e7eb7 9284defa40d42609837790b53ee53a8f {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01378.WXS.N C3N-01378 PDA WXS blood_normal CPT0088250002 CPT0088250002.WholeExome.RP-1303.bam 26483056425 BAM submitted_aligned CPTAC3 9786455c-dea1-4ad0-92c8-cdf85e8ffa9a 4dc9f1a4b7a97ab5595ce9e2aea8ce0f {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01378.WXS.N.hg38 C3N-01378 PDA WXS blood_normal CPT0088250002 5c4b90b6-5f34-4f61-8ecc-ea373e4b3cb4_gdc_realn.bam 35635702922 BAM harmonized CPTAC3 97059ea2-14f3-4daa-8c3b-bfd2555dc149 0f1b9a6461cde9a9de1089d22aa60fb3 {"aliquot_tag": "ALQ_93eb4548", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01379.ANN_f8051ff3.MethArray.Green.T C3N-01379 PDA Methylation_Array tumor CPT0088840010 202184990013_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0a3a1ff9-ea3e-44e9-bfc2-60b73fdb2a68 2373a131ff57c3b786132a908ec81347 {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.ANN_f8051ff3.MethArray.Red.T C3N-01379 PDA Methylation_Array tumor CPT0088840010 202184990013_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 4d8455da-d08d-4a9c-9386-bf6080a46eea 34338ae56e8f3969e6729cd234abc1cd {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.ANN_f8051ff3.WGS.T C3N-01379 PDA WGS tumor CPT0088840010 CPT0088840010.WholeGenome.RP-1303.bam 77506684757 BAM submitted_aligned CPTAC3 b2896900-84be-49a9-8117-1fcfec81405f 82f3e7877c28ed7999d22b4ded523041 {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.ANN_f8051ff3.WGS.T.hg38 C3N-01379 PDA WGS tumor CPT0088840010 358e92fb-9223-4b81-bd63-65d54ca74472_gdc_realn.bam 116324970668 BAM harmonized CPTAC3 59c32a92-7edc-4765-86a8-1c1c69a544d1 cc1f642ea829bdf256ce513758125e50 {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.ANN_f8051ff3.WXS.T C3N-01379 PDA WXS tumor CPT0088840010 CPT0088840010.WholeExome.RP-1303.bam 31156709591 BAM submitted_aligned CPTAC3 c67ecd59-8d76-4287-b8b4-6ab12a838761 a8c56185c47b3bd3e4461d72374a90de {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.ANN_f8051ff3.WXS.T.hg38 C3N-01379 PDA WXS tumor CPT0088840010 358e92fb-9223-4b81-bd63-65d54ca74472_gdc_realn.bam 43144516005 BAM harmonized CPTAC3 f4baf547-994f-4251-b408-f54c033ebfa7 0273d0dd587c0e9bbc995e6183daa2ae {"aliquot_tag": "ANN_f8051ff3", "aliquot_annotation": "Original DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.miRNA-Seq.S12_L008_R1.T C3N-01379 PDA miRNA-Seq tumor CPT0088840007 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L008_R1_001.unaln.bam 230932176 BAM S12_L008_R1 submitted_unaligned CPTAC3 7e48d40e-543a-4228-a066-3eb83fa37c3d e32debdcf29d94d336387095ccf61f9d {"aliquot_tag": "ALQ_7f7abb11", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.miRNA-Seq.T.hg38 C3N-01379 PDA miRNA-Seq tumor CPT0088840007 a859ebd7-9363-4609-b2a0-6e17a350fc52_mirnaseq_gdc_realn.bam 249707600 BAM harmonized CPTAC3 46065b0b-ce4e-4cb6-a5d1-f71f3890fba0 68c6a3c8405904e9b8cbf15103a5a675 {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.REP_9fbd14d0.Targeted.T C3N-01379 PDA Targeted_Sequencing tumor CPT0088840010_1 CPT0088840010_1.CustomSelection.RP-1303.PDO-18786.bam 5272955997 BAM submitted_aligned CPTAC3 0c7471b0-99fd-4aa8-9390-6cf8455f4049 589766f1130e392f8041fca8b71c6481 {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.REP_9fbd14d0.Targeted.T.hg38 C3N-01379 PDA Targeted_Sequencing tumor CPT0088840010_1 a163fbd1-97f0-44e8-8b1b-245624d0c527_targetedsequencing_gdc_realn.bam 7414529883 BAM harmonized CPTAC3 54859353-9a30-46f8-9e18-19fae0d798ed 190ce3ed5d64b8c1196efe7428725491 {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.REP_9fbd14d0.WXS.T C3N-01379 PDA WXS tumor CPT0088840010_1 CPT0088840010_1.WholeExome.RP-1303.bam 51096887089 BAM submitted_aligned CPTAC3 896a7a4e-917e-4c11-abb3-9c0c9053d7fa 1f33f0604b89a5215788b1d27c499e0c {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.REP_9fbd14d0.WXS.T.hg38 C3N-01379 PDA WXS tumor CPT0088840010_1 a163fbd1-97f0-44e8-8b1b-245624d0c527_wxs_gdc_realn.bam 70508072968 BAM harmonized CPTAC3 c69a480c-4977-4a71-96fe-1c54544db6e7 efb70d8a149112b44588c17fe0e46988 {"aliquot_tag": "REP_9fbd14d0", "aliquot_annotation": "Replacement DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.RNA-Seq.chimeric.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.chimeric.gdc_realn.bam 32217807 BAM chimeric harmonized CPTAC3 f52b0f6d-c6ba-498d-adf3-d9865c0168ed bd484a265fa8c68dc2acdb0443e25275 {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.RNA-Seq.genomic.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.genomic.gdc_realn.bam 8724219339 BAM genomic harmonized CPTAC3 9b88ed8a-d52a-4ece-8dcb-e61581d181c4 8c4f7bf3daa2364bae506154f2f812d9 {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.RNA-Seq.S10_L007_R1.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R1_001.fastq.gz 4466540867 FASTQ S10_L007_R1 submitted_unaligned CPTAC3 d2df56fc-8a5f-4da4-989f-170e8a7f9c94 cdf8296920e3846fa9d687b2d452ca1b {"aliquot_tag": "ALQ_7f7abb11", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.RNA-Seq.S10_L007_R2.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R2_001.fastq.gz 4465225732 FASTQ S10_L007_R2 submitted_unaligned CPTAC3 480f8010-a045-4fec-93c9-3080eb0acc86 138ab6f305d5db392535c86e328e1796 {"aliquot_tag": "ALQ_7f7abb11", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.RNA-Seq.transcriptome.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.transcriptome.gdc_realn.bam 11587137428 BAM transcriptome harmonized CPTAC3 f57c34fb-0f56-4089-b4a1-cd35e91792cf 443942b78eccad585aa17030f0c44d4a {"aliquot_tag": "ALQ_7f7abb11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01379.WGS.N C3N-01379 PDA WGS blood_normal CPT0088890001 CPT0088890001.WholeGenome.RP-1303.bam 72609021852 BAM submitted_aligned CPTAC3 64c6c23c-2369-4367-801c-0f855304c052 fe0cdc5aedd8d388a4b37478214cc64d {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01379.WGS.N.hg38 C3N-01379 PDA WGS blood_normal CPT0088890001 9d162609-b371-4d3b-9491-2b071868f2e1_gdc_realn.bam 109071745709 BAM harmonized CPTAC3 f70124a7-b4c8-4b64-accf-9a34cc635e3a f016c19f93778e7d424e54968698e749 {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01379.WXS.N C3N-01379 PDA WXS blood_normal CPT0088890001 CPT0088890001.WholeExome.RP-1303.bam 42473251354 BAM submitted_aligned CPTAC3 c4f3e388-9e29-4d40-9ee4-1e24e6530af7 7a5f6e875a10d66b743a54d09eaa0f09 {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01379.WXS.N.hg38 C3N-01379 PDA WXS blood_normal CPT0088890001 9d162609-b371-4d3b-9491-2b071868f2e1_gdc_realn.bam 58736206063 BAM harmonized CPTAC3 bf023e2d-7b85-4a0a-9a93-cdee2f4bf118 1e4b0050d1ac3063bedc025b2ff99f02 {"aliquot_tag": "ALQ_6e89da95", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01380.ADD_235e6ff5.MethArray.Green.T C3N-01380 PDA Methylation_Array tumor CPT0088260010 202163550007_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 20df486d-a9c4-4ac8-b840-a1ec9c9a4d3c 27439d6ab207974bee294c22ad952f4d {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.ADD_235e6ff5.MethArray.Red.T C3N-01380 PDA Methylation_Array tumor CPT0088260010 202163550007_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6d3b4a7b-949f-487c-97ca-cac7222520d6 609fe85481f25b735f491e41455f64b9 {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.ADD_235e6ff5.WGS.T C3N-01380 PDA WGS tumor CPT0088260010 CPT0088260010.WholeGenome.RP-1303.bam 64112950220 BAM submitted_aligned CPTAC3 b0554a96-b25f-4492-a28f-08ff8cb3e0ac 7aed6f06c99c58a16b9445d092d6161e {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.ADD_235e6ff5.WGS.T.hg38 C3N-01380 PDA WGS tumor CPT0088260010 1a8d6818-f4d7-41a3-bd6c-fe47b6903200_gdc_realn.bam 97247490497 BAM harmonized CPTAC3 a36701b5-5233-479f-94e9-add8ed53b7e2 28871b49a6ad65af43003a45ef991833 {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.ADD_235e6ff5.WXS.T C3N-01380 PDA WXS tumor CPT0088260010 CPT0088260010.WholeExome.RP-1303.bam 35771944400 BAM submitted_aligned CPTAC3 01c7b559-cf2f-4008-ac18-341b0bba8615 99b4fb0794617f2900e3648ff7edc38d {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.ADD_235e6ff5.WXS.T.hg38 C3N-01380 PDA WXS tumor CPT0088260010 1a8d6818-f4d7-41a3-bd6c-fe47b6903200_gdc_realn.bam 49604077098 BAM harmonized CPTAC3 84697566-2ee3-4f9f-9b76-19f884bafd27 e868a59bff6a1ef5e3ed99bb905634ee {"aliquot_tag": "ADD_235e6ff5", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.miRNA-Seq.S9_L008_R1.T C3N-01380 PDA miRNA-Seq tumor CPT0088260007 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L008_R1_001.unaln.bam 201245981 BAM S9_L008_R1 submitted_unaligned CPTAC3 784334e9-5638-4a8f-9f6c-ba1342bbaec1 8df7bbb7c77944046663275fc709d634 {"aliquot_tag": "ALQ_a421cb17", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.miRNA-Seq.T.hg38 C3N-01380 PDA miRNA-Seq tumor CPT0088260007 e24e5775-5795-4f87-b95b-e6ad6284712b_mirnaseq_gdc_realn.bam 223779343 BAM harmonized CPTAC3 2754e5af-3557-4d8f-97d4-0d5f94093c48 6d079f5bb5b772b9078919114c4359e1 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.RNA-Seq.chimeric.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.chimeric.gdc_realn.bam 36232678 BAM chimeric harmonized CPTAC3 02710637-3b79-493e-a343-6ef844c422d3 4072bae2734877640195f4c4523bbdc4 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.RNA-Seq.genomic.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.genomic.gdc_realn.bam 7917800435 BAM genomic harmonized CPTAC3 93a6be85-5c6d-4a09-ba43-263ed7949894 3ec9c1598157de75b852cd6c0e797867 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.RNA-Seq.S4_L001_R1.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3802894924 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 ec0d2575-8b7c-4b7d-8e89-a472ee28eec6 0d95f4b996200a365a1dbd1c72224ed3 {"aliquot_tag": "ALQ_a421cb17", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.RNA-Seq.S4_L001_R2.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4114549069 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 d6de1c45-d582-4677-abf6-3fe7ec0101db d04a823043887c6f17f26e8679ce17b6 {"aliquot_tag": "ALQ_a421cb17", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.RNA-Seq.transcriptome.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.transcriptome.gdc_realn.bam 11512078718 BAM transcriptome harmonized CPTAC3 62408860-452e-47bc-be41-732bfda6898b 8b84af27f9c576fbd06442ba248003d4 {"aliquot_tag": "ALQ_a421cb17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.WGS.N C3N-01380 PDA WGS blood_normal CPT0088300002 CPT0088300002.WholeGenome.RP-1303.bam 64652874371 BAM submitted_aligned CPTAC3 ff9ea438-f289-48ce-bb6e-29c9c35d3cd0 b8368df7819498a8f1af1e6130869766 {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01380.WGS.N.hg38 C3N-01380 PDA WGS blood_normal CPT0088300002 2067ab53-1961-44eb-be0e-f45c0455aa68_gdc_realn.bam 96307704857 BAM harmonized CPTAC3 c0939d37-8ae9-4f0e-a4d7-c4b43a178f19 48d912561f57aa4cf60687ad993dae29 {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01380.WXS.N C3N-01380 PDA WXS blood_normal CPT0088300002 CPT0088300002.WholeExome.RP-1303.bam 27979562421 BAM submitted_aligned CPTAC3 f209fca0-cbfc-405d-a850-10a33196ced2 ac20be1c1ec81acfc7b9abf2bd0530c0 {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01380.WXS.N.hg38 C3N-01380 PDA WXS blood_normal CPT0088300002 2067ab53-1961-44eb-be0e-f45c0455aa68_gdc_realn.bam 37912026073 BAM harmonized CPTAC3 dc58f100-c805-4bfd-b7bf-099b134d5355 0f74bbb060b4f7f33a611431ddaf2c6b {"aliquot_tag": "ALQ_9057199d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01380.WXS.T C3N-01380 PDA WXS tumor CPT0088260010_1 CPT0088260010_1.WholeExome.RP-1303.bam 59273893283 BAM submitted_aligned CPTAC3 64694500-12f3-4191-81c9-5d422b9556f7 1bb67949608f5de8d7bc71162a1ce322 {"aliquot_tag": "ALQ_99e21931", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01380.WXS.T.hg38 C3N-01380 PDA WXS tumor CPT0088260010_1 04f52594-db73-49d9-a615-6b08a12bd361_wxs_gdc_realn.bam 82121699101 BAM harmonized CPTAC3 1937ad57-852b-4924-9d72-82a51a3c3005 e40c31b28e18687c668bc43a76c58d13 {"aliquot_tag": "ALQ_99e21931", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.MethArray.Green.T C3N-01381 PDA Methylation_Array tumor CPT0094130010 202234380024_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8311a8e3-65c5-41d1-8ecd-6d2c81e1091f 44454b8fc85fca513f18a2f5c46d2de8 {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.MethArray.Red.T C3N-01381 PDA Methylation_Array tumor CPT0094130010 202234380024_R08C01_Red.idat 13676246 IDAT Red NA CPTAC3 e817bc6b-c074-4ebf-9863-53753e4354ee b1bb72566f97f3acfe907b9190f9fe68 {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.miRNA-Seq.S29_L007_R1.T C3N-01381 PDA miRNA-Seq tumor CPT0094130007 180828_UNC32-K00270_0112_AHWTLNBBXX_TCGAAG_S29_L007_R1_001.unaln.bam 153502345 BAM S29_L007_R1 submitted_unaligned CPTAC3 d5121478-dea8-48e2-b934-8619aff6ca5c b3d98555f480aff02c5ade5b6471a8a9 {"aliquot_tag": "ALQ_e15f5c23", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.miRNA-Seq.T.hg38 C3N-01381 PDA miRNA-Seq tumor CPT0094130007 35eb68fa-7867-402e-bf76-b40739f5e337_mirnaseq_gdc_realn.bam 172426725 BAM harmonized CPTAC3 03f407e6-8bf7-4b0e-886c-73e700829e49 7895966da157d4b494841f575c5cb64f {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.RNA-Seq.chimeric.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.chimeric.gdc_realn.bam 37813790 BAM chimeric harmonized CPTAC3 fbb3c774-e500-4a78-898f-5511607ed243 5f7cf9e1c26c97287c380a6ab2e61800 {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.RNA-Seq.genomic.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.genomic.gdc_realn.bam 9500416436 BAM genomic harmonized CPTAC3 ad81b370-f623-4e05-aa6e-ba5592e7bc5c 333a0dd056ead4044f75b754b47b09d4 {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.RNA-Seq.S22_L007_R1.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R1_001.fastq.gz 4137102742 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 3d2f71c7-ee5c-4048-8b56-aa90f92ec9f3 8612f2f7ae23768a5c89821f5452c139 {"aliquot_tag": "ALQ_e15f5c23", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.RNA-Seq.S22_L007_R2.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R2_001.fastq.gz 4378756240 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 a83cfe92-7f82-4fac-8815-11c49562e59d 02c96e92c7ab941b8d27e9e98ac5f8ce {"aliquot_tag": "ALQ_e15f5c23", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.RNA-Seq.transcriptome.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.transcriptome.gdc_realn.bam 10860409878 BAM transcriptome harmonized CPTAC3 c7432bcf-9fff-4ce5-b7ae-00d6f35f39d5 eda08f2cc4a718634c61e3fcb83b8d2f {"aliquot_tag": "ALQ_e15f5c23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.WGS.N C3N-01381 PDA WGS blood_normal CPT0094170002 CPT0094170002.WholeGenome.RP-1303.bam 67383714619 BAM submitted_aligned CPTAC3 caef7227-8a1e-4974-96d9-3c14bd5d1bca 553e2e3669883c95fb18f978c1eb01aa {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01381.WGS.N.hg38 C3N-01381 PDA WGS blood_normal CPT0094170002 ca006e8d-b3d7-4bcc-a0a2-f0c274572f6c_wgs_gdc_realn.bam 100708359366 BAM harmonized CPTAC3 1bc1098d-01cf-4166-9e4b-baadf195614a 1eb3cb8d52c3a4e5429a60dba982d560 {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01381.WGS.T C3N-01381 PDA WGS tumor CPT0094130010 CPT0094130010.WholeGenome.RP-1303.bam 67586075404 BAM submitted_aligned CPTAC3 21db278d-8c7d-4e57-badc-fcd7392de277 35518a524fece5e18afa0a82747860f3 {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.WGS.T.hg38 C3N-01381 PDA WGS tumor CPT0094130010 fa5ac453-7220-4531-8343-76dfb5b394d3_wgs_gdc_realn.bam 100189004417 BAM harmonized CPTAC3 6e703ac2-2371-4dfa-92fc-265c2a718923 34a3d1b829bdaab2a1f58a8f9c41d00f {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.WXS.N C3N-01381 PDA WXS blood_normal CPT0094170002 CPT0094170002.WholeExome.RP-1303.bam 34936869207 BAM submitted_aligned CPTAC3 b90d11c5-c704-4978-b880-4fcbce41f324 eb8da5127a7dee3b3b7b059ab09bbfbd {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01381.WXS.N.hg38 C3N-01381 PDA WXS blood_normal CPT0094170002 ca006e8d-b3d7-4bcc-a0a2-f0c274572f6c_wxs_gdc_realn.bam 48405589111 BAM harmonized CPTAC3 74f08f4a-f4f4-4a2e-bfec-eced98b55d65 c9b2f8c1276e3ae4c99a4e3d3a8b78e0 {"aliquot_tag": "ALQ_64b50e6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01381.WXS.T C3N-01381 PDA WXS tumor CPT0094130010_1 CPT0094130010_1.WholeExome.RP-1303.bam 62690134232 BAM submitted_aligned CPTAC3 c85cfa79-90c2-428c-8b6c-fe87dee4cd11 476322224e79c58cf4149e1a090a26f0 {"aliquot_tag": "ALQ_4ca3a95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.WXS.T C3N-01381 PDA WXS tumor CPT0094130010 CPT0094130010.WholeExome.RP-1303.bam 33607778395 BAM submitted_aligned CPTAC3 1a989c83-42c8-49bb-8ade-11ee4936903f 7a8bf076a1aba263ac68feee5f47254c {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.WXS.T.hg38 C3N-01381 PDA WXS tumor CPT0094130010_1 9ef2e136-4bb4-4260-a7e4-b138acea7b04_wxs_gdc_realn.bam 86016930427 BAM harmonized CPTAC3 a017c7b2-ae0b-4305-8562-0b7b22c8e8ff 81765278a4a0f46397ad0a43555dae33 {"aliquot_tag": "ALQ_4ca3a95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01381.WXS.T.hg38 C3N-01381 PDA WXS tumor CPT0094130010 fa5ac453-7220-4531-8343-76dfb5b394d3_wxs_gdc_realn.bam 46654123884 BAM harmonized CPTAC3 2215497a-f173-49ba-ba51-2ac92c26791a f880603b9beab6fbc472e038ed48f65d {"aliquot_tag": "ALQ_6620f8c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.MethArray.Green.T C3N-01382 PDA Methylation_Array tumor CPT0094180009 202234370119_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 fc2bcf3c-5d16-4ff3-9b3a-c515f6a641ab 6beaaf9ab014048844b4b8e2ec0177ab {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.MethArray.Red.T C3N-01382 PDA Methylation_Array tumor CPT0094180009 202234370119_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 cc1564d8-21be-450a-a8ff-1024fb65c789 4a094fc26e014990f8ff870386ec9f59 {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.miRNA-Seq.S28_L007_R1.T C3N-01382 PDA miRNA-Seq tumor CPT0094180006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCGGCA_S28_L007_R1_001.unaln.bam 170595078 BAM S28_L007_R1 submitted_unaligned CPTAC3 ee2223d0-4d9c-4b73-bb6d-ecf28fac14df 2d5034c35970991955c168ece141df8c {"aliquot_tag": "ALQ_e1885da4", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.miRNA-Seq.T.hg38 C3N-01382 PDA miRNA-Seq tumor CPT0094180006 2175ca8c-4f7a-466f-8adc-6d084f5ad60f_mirnaseq_gdc_realn.bam 192142620 BAM harmonized CPTAC3 9186f778-53ef-4196-ba94-6c75f4fb9615 9132e6767de7a71c8341a5155c898068 {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.RNA-Seq.chimeric.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.chimeric.gdc_realn.bam 30332158 BAM chimeric harmonized CPTAC3 adae2836-7ece-4f9f-b7b1-ba7d1aced942 3aa0ff22c6e7566c743ac9141946fc47 {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.RNA-Seq.genomic.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.genomic.gdc_realn.bam 8387368398 BAM genomic harmonized CPTAC3 b2d49af0-25a0-4b86-9bae-b64063d76810 2e34ddc6750a0427eb34f15d983283a7 {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.RNA-Seq.S23_L007_R1.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R1_001.fastq.gz 3671703287 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 7f004367-61a4-4947-b979-d566027ccff3 a99614e507b74a39a88a617f82126ab2 {"aliquot_tag": "ALQ_e1885da4", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.RNA-Seq.S23_L007_R2.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R2_001.fastq.gz 3950980653 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 dc54c3f6-54c2-42ec-bea0-2faa46a88684 a99a9fd05054287aa8d91af1b4338c7f {"aliquot_tag": "ALQ_e1885da4", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.RNA-Seq.transcriptome.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.transcriptome.gdc_realn.bam 10432685066 BAM transcriptome harmonized CPTAC3 a608a823-3517-4136-b081-8d803eb49253 ed64294ad2c15b0c457e03c06b1bc04d {"aliquot_tag": "ALQ_e1885da4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.Targeted.T C3N-01382 PDA Targeted_Sequencing tumor CPT0094180009_1 CPT0094180009_1.CustomSelection.RP-1303.PDO-18786.bam 3020848472 BAM submitted_aligned CPTAC3 3cb1732f-7645-4880-aa90-ed0302aaecc3 f59d8461ae9eb56adc6920b52ce169bc {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.Targeted.T.hg38 C3N-01382 PDA Targeted_Sequencing tumor CPT0094180009_1 716a0ff5-1a12-4918-8722-0a0961742aca_targetedsequencing_gdc_realn.bam 4275003724 BAM harmonized CPTAC3 846e60ad-8d47-4e2e-a5bb-db5c166ff39a 6dd2aa5a45b3a9a7d82cb9a43495d26b {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.WGS.N C3N-01382 PDA WGS blood_normal CPT0094220002 CPT0094220002.WholeGenome.RP-1303.bam 53717266052 BAM submitted_aligned CPTAC3 743345c6-8534-4b0d-b206-49600a064f3f 045b9f714c7ec6f7b33b4089a2749090 {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01382.WGS.N.hg38 C3N-01382 PDA WGS blood_normal CPT0094220002 63bb2240-6304-4145-a676-3a947fd33ed8_wgs_gdc_realn.bam 81628804527 BAM harmonized CPTAC3 85740044-8acb-4c6f-a3f9-bc53d37e4f00 8496bb8f62ef152cbed441e4301c5288 {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01382.WGS.T C3N-01382 PDA WGS tumor CPT0094180009 CPT0094180009.WholeGenome.RP-1303.bam 62209265396 BAM submitted_aligned CPTAC3 76d54210-ce38-4280-b315-f04210e16cdc 3966b358c69426e898c275e9c0465a6f {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.WGS.T.hg38 C3N-01382 PDA WGS tumor CPT0094180009 c65dc830-7f92-420a-9f37-cda5c532bad5_wgs_gdc_realn.bam 91217785071 BAM harmonized CPTAC3 dc49827e-1460-48c2-a337-89def4e28e1e 0fe2b4f41b0b2dd70fec36ed5e7f287b {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.WXS.N C3N-01382 PDA WXS blood_normal CPT0094220002 CPT0094220002.WholeExome.RP-1303.bam 31200698268 BAM submitted_aligned CPTAC3 f8d0fba5-ef37-430e-9b93-59494f222b0d 43fbae2ddca759be6c778341f156979b {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01382.WXS.N.hg38 C3N-01382 PDA WXS blood_normal CPT0094220002 63bb2240-6304-4145-a676-3a947fd33ed8_wxs_gdc_realn.bam 41616147219 BAM harmonized CPTAC3 73e1e505-6379-406d-90f6-59dcd495bf78 37754527a5ea08c3e8c040d6124d5100 {"aliquot_tag": "ALQ_2ac1f3b2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01382.WXS.T C3N-01382 PDA WXS tumor CPT0094180009_1 CPT0094180009_1.WholeExome.RP-1303.bam 56771916709 BAM submitted_aligned CPTAC3 1d9197df-a15c-425a-8097-5fcb1c618054 a3a10a937d4d7be375185b071ef996ea {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.WXS.T C3N-01382 PDA WXS tumor CPT0094180009 CPT0094180009.WholeExome.RP-1303.bam 28303119047 BAM submitted_aligned CPTAC3 f9252153-12fb-4f8b-8984-7f443c7f6e60 44e10c3f25dda5f6698c4d609fb33add {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.WXS.T.hg38 C3N-01382 PDA WXS tumor CPT0094180009_1 716a0ff5-1a12-4918-8722-0a0961742aca_wxs_gdc_realn.bam 78131155862 BAM harmonized CPTAC3 263edada-8cb7-4dbb-b2db-695f3969f3c5 8bb4461910bbd693f70f9fbb08b35910 {"aliquot_tag": "ALQ_f9c9a14f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01382.WXS.T.hg38 C3N-01382 PDA WXS tumor CPT0094180009 c65dc830-7f92-420a-9f37-cda5c532bad5_wxs_gdc_realn.bam 39373032176 BAM harmonized CPTAC3 3b42b6c8-883b-4f37-9ef8-20a7bdc9d54b 2becdaddd0e53ee181914fe4cc9eb20f {"aliquot_tag": "ALQ_71374035", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.MethArray.Green.T C3N-01383 PDA Methylation_Array tumor CPT0094230010 202234380102_R03C01_Grn.idat 13676232 IDAT Green NA CPTAC3 d3b920f4-066c-4d21-ae77-e6cf6298dbc0 3eeb32cf9d95fec3aed06d8ddf0bce86 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.MethArray.Red.T C3N-01383 PDA Methylation_Array tumor CPT0094230010 202234380102_R03C01_Red.idat 13676232 IDAT Red NA CPTAC3 d33cc5bc-5134-4dc1-bfa6-66f4289f7493 8cbaee3ed7f54d38ef9a75252e1e79d5 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.miRNA-Seq.S19_L008_R1.T C3N-01383 PDA miRNA-Seq tumor CPT0094230007 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L008_R1_001.unaln.bam 217395673 BAM S19_L008_R1 submitted_unaligned CPTAC3 806ee726-da57-4323-a3a8-44d883b359d3 e669099b8b2b6aec6df9b667ea5e91a0 {"aliquot_tag": "ALQ_67cb2e8d", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.miRNA-Seq.T.hg38 C3N-01383 PDA miRNA-Seq tumor CPT0094230007 49cf8729-f504-4924-b59c-0dc25a1f8ec5_mirnaseq_gdc_realn.bam 243541612 BAM harmonized CPTAC3 a309309f-1345-4e05-9bc8-8a221f59cc19 21562e8b2d203f5ad754d55eaa0686b5 {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.RNA-Seq.chimeric.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.chimeric.gdc_realn.bam 78609569 BAM chimeric harmonized CPTAC3 cb4265c3-5b98-4596-a8b8-eeda70b47c1a 6ecfdd1a02ecfadd5dacbac01248184a {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.RNA-Seq.genomic.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.genomic.gdc_realn.bam 6908381416 BAM genomic harmonized CPTAC3 e6c8c765-6bca-4736-bec7-e8bc5bcdfe3b 06480b1c6a8ffc3ce7027cf094e3a455 {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.RNA-Seq.S62_L008_R1.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R1_001.fastq.gz 3141757925 FASTQ S62_L008_R1 submitted_unaligned CPTAC3 4aafb23a-721d-4b1e-8870-b7720430d5b4 108a6b744a34d413c9d9c42e8b9eb02a {"aliquot_tag": "ALQ_67cb2e8d", "sample": "S62", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.RNA-Seq.S62_L008_R2.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R2_001.fastq.gz 3227545193 FASTQ S62_L008_R2 submitted_unaligned CPTAC3 20ee2a89-2e2a-4d7e-8720-aea154e103ee 00c685fd5353e9d9031ce17182a42242 {"aliquot_tag": "ALQ_67cb2e8d", "sample": "S62", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.RNA-Seq.transcriptome.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.transcriptome.gdc_realn.bam 8513872118 BAM transcriptome harmonized CPTAC3 2cbc7df3-30df-4747-b471-f2ae936f025f 026ac4c0dfac3f17a8f3ae3ba5c6091b {"aliquot_tag": "ALQ_67cb2e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.WGS.N C3N-01383 PDA WGS blood_normal CPT0094270002 CPT0094270002.WholeGenome.RP-1303.bam 69143468893 BAM submitted_aligned CPTAC3 d4706d1d-186f-462f-9549-d32a8fa0eaf8 9e036bf65484c778d92360653ab502f5 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01383.WGS.N.hg38 C3N-01383 PDA WGS blood_normal CPT0094270002 004f4cdd-b07f-4986-83ec-2288789ae627_wgs_gdc_realn.bam 101919368086 BAM harmonized CPTAC3 f9baed66-1006-4294-b2c3-6228c7f4087f 021233cd75eb056166901bc66c92eb87 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01383.WGS.T C3N-01383 PDA WGS tumor CPT0094230010 CPT0094230010.WholeGenome.RP-1303.bam 64211961133 BAM submitted_aligned CPTAC3 a7f353f4-010c-4028-a890-4588a2e0064a b06a1c1fe73e3efe46a0ba0150371058 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.WGS.T.hg38 C3N-01383 PDA WGS tumor CPT0094230010 84eb0d82-6640-4db2-a981-44810476cca7_wgs_gdc_realn.bam 94941459212 BAM harmonized CPTAC3 6ef5cb72-ab1c-47c0-85f1-23c81e99187e 8dc91a0d39411ce42cf3d1070a4b49e7 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.WXS.N C3N-01383 PDA WXS blood_normal CPT0094270002 CPT0094270002.WholeExome.RP-1303.bam 32856834167 BAM submitted_aligned CPTAC3 cc19968f-6e30-4527-b66d-366940a41370 5640774656617e2a402891b2f077c896 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01383.WXS.N.hg38 C3N-01383 PDA WXS blood_normal CPT0094270002 004f4cdd-b07f-4986-83ec-2288789ae627_wxs_gdc_realn.bam 45129679541 BAM harmonized CPTAC3 5fd54386-ddcc-48bc-8837-77f3107979fb 160e850395414bbecc845297cb2faf64 {"aliquot_tag": "ALQ_e2217cc2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01383.WXS.T C3N-01383 PDA WXS tumor CPT0094230010_1 CPT0094230010_1.WholeExome.RP-1303.bam 57192231159 BAM submitted_aligned CPTAC3 d3f25d43-c678-4a66-9485-47ff3a1b9cf9 391f291d8a0e2700033e3b713eb5704f {"aliquot_tag": "ALQ_c22caebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.WXS.T C3N-01383 PDA WXS tumor CPT0094230010 CPT0094230010.WholeExome.RP-1303.bam 33550097648 BAM submitted_aligned CPTAC3 1185b335-7de3-4b81-a782-0517d9ee4a90 2877d811cc7491fd9714dd671ecd6c39 {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.WXS.T.hg38 C3N-01383 PDA WXS tumor CPT0094230010_1 75bb8fa6-86ac-434f-afd7-12332afe19f1_wxs_gdc_realn.bam 78814281670 BAM harmonized CPTAC3 1981d72f-4966-4b2c-9ee7-845c9791f6d9 728c5b3861b1f07552fd9bf872fcf35d {"aliquot_tag": "ALQ_c22caebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01383.WXS.T.hg38 C3N-01383 PDA WXS tumor CPT0094230010 84eb0d82-6640-4db2-a981-44810476cca7_wxs_gdc_realn.bam 46403245903 BAM harmonized CPTAC3 1c05d345-e7e0-4082-a3b3-f60c51ffe779 154930efd7d8f6074e5614a93485ff6e {"aliquot_tag": "ALQ_e0b48a6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.ANN_1fce52dd.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.chimeric.gdc_realn.bam 226207500 BAM chimeric harmonized CPTAC3 cdc1018d-8a77-45b4-868e-5a9cf4e98bc8 bad284ba4f1cb7160fff2ab1a777e14f {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.ANN_1fce52dd.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.genomic.gdc_realn.bam 13718131555 BAM genomic harmonized CPTAC3 95192e38-4089-4992-9714-15e6341f32e8 fc785285f0d541cf5bfb81d91e070149 {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.ANN_1fce52dd.RNA-Seq.S12_L008_R1.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R1_001.fastq.gz 4922822305 FASTQ S12_L008_R1 submitted_unaligned CPTAC3 4799b1ce-1a07-4ab4-a176-22371dbfbba7 e40d4a33f316383866d4af07cfbf7e9a {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.ANN_1fce52dd.RNA-Seq.S12_L008_R2.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R2_001.fastq.gz 5749298642 FASTQ S12_L008_R2 submitted_unaligned CPTAC3 6b5fe0a9-edcc-4108-86a3-d2f6c034e8cf 4429ae00d936c07b0072846ab6237749 {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.ANN_1fce52dd.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.transcriptome.gdc_realn.bam 12920665947 BAM transcriptome harmonized CPTAC3 52428fb9-9b94-4d37-8277-16bf870b3371 f9bbca53831b9f2821048dd8fd4c7244 {"aliquot_tag": "ANN_1fce52dd", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_372589e6.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.chimeric.gdc_realn.bam 359260558 BAM chimeric harmonized CPTAC3 76f6802a-bd8b-421d-bd20-ee975632472c a0939de1d3bae16876f220467c0c9cc3 {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_372589e6.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.genomic.gdc_realn.bam 9625668394 BAM genomic harmonized CPTAC3 a945d670-4c9f-43fc-ad70-2a55e91ac42a d3d3fcd6c5f9f105d11da15c8a48c811 {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_372589e6.RNA-Seq.S22_L007_R1.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 4090842586 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 4d478481-1d87-42c7-84a4-4fe6a10af11e 531494711a9f323896eaa161207048be {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_372589e6.RNA-Seq.S22_L007_R2.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4485418671 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 834c0da9-860f-4786-b9c4-e284f94aafd3 59bc5bdca8f55f5d4e63bcd8490cc0fb {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_372589e6.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.transcriptome.gdc_realn.bam 10501613940 BAM transcriptome harmonized CPTAC3 47dfaee1-5d2e-41ff-8d98-13d1b3434611 2874e03957ebf61d42ad3b99ac8575b8 {"aliquot_tag": "DUP_372589e6", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_474f7d69.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.chimeric.gdc_realn.bam 311818603 BAM chimeric harmonized CPTAC3 2536675f-fc6e-497e-9d3b-04d92808b820 9e62786c0bfd6e9e7808c8951be3a4c8 {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_474f7d69.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.genomic.gdc_realn.bam 9278738172 BAM genomic harmonized CPTAC3 2f15cfd5-a1c6-4b4e-8d38-6830695f665b 5b29715a1a1007f0ec3b2fe8c382156e {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_474f7d69.RNA-Seq.S2_L004_R1.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R1_001.fastq.gz 4147996894 FASTQ S2_L004_R1 submitted_unaligned CPTAC3 6754775d-8884-41a2-9936-3eb2eda29880 90699fdcc948b05ce736b67a622c0d6d {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_474f7d69.RNA-Seq.S2_L004_R2.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R2_001.fastq.gz 4437956168 FASTQ S2_L004_R2 submitted_unaligned CPTAC3 4868e68c-f845-4d95-96cb-26fb4792d981 8409828892bd32256b640e99dfbbaad9 {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_474f7d69.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.transcriptome.gdc_realn.bam 12085857456 BAM transcriptome harmonized CPTAC3 578953f3-fc7c-4276-ae06-05f09fd1cb65 2bcd6625a7429fbc809d161610ac6e5e {"aliquot_tag": "DUP_474f7d69", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_78641f21.WXS.T C3N-01385 PDA WXS tumor CPT0162230034 CPT0162230034.WholeExome.RP-1303.bam 22816485192 BAM submitted_aligned CPTAC3 da32c776-50a1-4373-a4c2-5b8befbd9122 207c3389286de36ec40420c50710b18e {"aliquot_tag": "DUP_78641f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_78641f21.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230034 2fa1cac6-09d3-406e-beb5-a1aba56cad25_wxs_gdc_realn.bam 31451370608 BAM harmonized CPTAC3 5b16b6f6-21e2-4afa-aa5f-e8a8125fbc8e b2881ce35f4179253c4ae25299a995c4 {"aliquot_tag": "DUP_78641f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_966a7e0d.WXS.T C3N-01385 PDA WXS tumor CPT0162230036 CPT0162230036.WholeExome.RP-1303.bam 26161139730 BAM submitted_aligned CPTAC3 e1b5f91a-5928-4da3-81d8-a01557a0aa4e bcdec209441a8672cd6bc3aa356f298e {"aliquot_tag": "DUP_966a7e0d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_966a7e0d.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230036 6d940223-932d-461f-beb3-6d67db47e55a_wxs_gdc_realn.bam 36220976322 BAM harmonized CPTAC3 1ca05fe4-bece-4c80-a094-6019cee40817 95bb08fcc16627d21cd0aaf194a212c1 {"aliquot_tag": "DUP_966a7e0d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_c80f88c9.RNA-Seq.chimeric.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.chimeric.gdc_realn.bam 493712376 BAM chimeric harmonized CPTAC3 5e87a61e-b877-46da-95f4-eb00a7e2ca6a a1684d8122ff7106a947afa8ecff7bc7 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_c80f88c9.RNA-Seq.genomic.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.genomic.gdc_realn.bam 10071795458 BAM genomic harmonized CPTAC3 cafcc6fd-dc05-47f3-83c5-9c96f3ce1ddc bf2afc29fe17eb769032b23a278bddb9 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_c80f88c9.RNA-Seq.S21_L007_R1.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4629280859 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 644d96f4-48fe-4542-a0a2-4d8c57c9e30f 4ef20835275ed5fe03aa6e0812a9e349 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_c80f88c9.RNA-Seq.S21_L007_R2.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4962339053 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 cb401ca0-5cd6-4ce5-aebd-4b551f5a80d8 0b390d69899fe7987fbc8ca790747837 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_c80f88c9.RNA-Seq.transcriptome.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.transcriptome.gdc_realn.bam 11383955527 BAM transcriptome harmonized CPTAC3 bb161611-c22f-4055-a3a7-7417b5c61d37 40fe7021e7247778ab089326fb3ea749 {"aliquot_tag": "DUP_c80f88c9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_f09af176.WXS.N C3N-01385 PDA WXS blood_normal CPT0162290002 CPT0162290002.WholeExome.RP-1303.bam 25869310081 BAM submitted_aligned CPTAC3 e1b37e53-40cc-49b6-b6b2-f61346178321 b0f22a45b963395aee654be5cef8d532 {"aliquot_tag": "DUP_f09af176", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01385.DUP_f09af176.WXS.N.hg38 C3N-01385 PDA WXS blood_normal CPT0162290002 2efe54c6-fdcb-45cc-ae06-81f1cf61b2a4_wxs_gdc_realn.bam 35784079661 BAM harmonized CPTAC3 7866fc75-788c-4deb-82d1-a43664538634 064a57e2161225d87cfe4ca532fc543e {"aliquot_tag": "DUP_f09af176", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01385.DUP_f632fb7.WXS.T C3N-01385 PDA WXS tumor CPT0162230035 CPT0162230035.WholeExome.RP-1303.bam 27689153191 BAM submitted_aligned CPTAC3 94a94d49-63d9-44c2-84a8-17556f036fd4 0c2ea9f5720983d3f09e9aa1db8d1868 {"aliquot_tag": "DUP_f632fb7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_f632fb7.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230035 baa11028-3f28-4117-bbb7-0f9803198041_wxs_gdc_realn.bam 38644917533 BAM harmonized CPTAC3 2d352beb-1df6-4761-8407-fab451d80e21 c68969b77681d989b50f06c7280575f7 {"aliquot_tag": "DUP_f632fb7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01385.DUP_fe92a6aa.RNA-Seq.chimeric.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.chimeric.gdc_realn.bam 295938002 BAM chimeric harmonized CPTAC3 779c4eec-e201-4968-a777-589320794991 d83fbafdabdfcb5b9d5b56ec0d0e7994 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_fe92a6aa.RNA-Seq.genomic.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.genomic.gdc_realn.bam 10584499058 BAM genomic harmonized CPTAC3 f8a7bd29-c603-4e0a-b2c0-73682aae56a0 be8264157933a89e85961a759013f166 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_fe92a6aa.RNA-Seq.S4_L004_R1.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R1_001.fastq.gz 4650700932 FASTQ S4_L004_R1 submitted_unaligned CPTAC3 ad698e55-b953-44e1-8faf-7e53aff97f22 efdcf8728560ba5d9be657d1fac32957 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_fe92a6aa.RNA-Seq.S4_L004_R2.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R2_001.fastq.gz 4756392003 FASTQ S4_L004_R2 submitted_unaligned CPTAC3 aa32ebc3-a36d-415e-ba0d-4e06836a9747 9a16f0d1a6b673e6d3aecf36982b33d4 {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01385.DUP_fe92a6aa.RNA-Seq.transcriptome.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.transcriptome.gdc_realn.bam 11476726041 BAM transcriptome harmonized CPTAC3 cd0ce9e2-0231-4123-8db0-305233140b2d 6ddb06e1a8bece721320b72e9cf5d44d {"aliquot_tag": "DUP_fe92a6aa", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01388.MethArray.Green.T C3N-01388 PDA Methylation_Array tumor CPT0088320009 202178770079_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 40305a71-642d-4f9b-9a57-75afad6e456c f46eb3c1df3fcf5e5a974866592e7470 {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.MethArray.Red.T C3N-01388 PDA Methylation_Array tumor CPT0088320009 202178770079_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 0b33687a-fbe4-41e3-be90-b1a254a60172 dd7300f687d0023060df6bb8123b5863 {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.miRNA-Seq.S10_L008_R1.T C3N-01388 PDA miRNA-Seq tumor CPT0088320006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L008_R1_001.unaln.bam 270159749 BAM S10_L008_R1 submitted_unaligned CPTAC3 b245afc2-1540-4b04-8cc3-a4bf672396c7 ed2f88d594cfd15afd7331c994375fc3 {"aliquot_tag": "ALQ_edfa8ee4", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.miRNA-Seq.T.hg38 C3N-01388 PDA miRNA-Seq tumor CPT0088320006 7ef9601d-289f-47bf-9c03-a85cfd6627a4_mirnaseq_gdc_realn.bam 292719523 BAM harmonized CPTAC3 4f3c87ca-12d0-4312-9c85-7969e1b70dcd 95258ea02b2ecf659a8ec14091d36431 {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.RNA-Seq.chimeric.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.chimeric.gdc_realn.bam 30446550 BAM chimeric harmonized CPTAC3 6ad23eb1-50d3-41a1-8439-8c7f7e8b6516 28ac569e8ab9f3cdd10b05288539470a {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.RNA-Seq.genomic.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.genomic.gdc_realn.bam 7060171934 BAM genomic harmonized CPTAC3 dce7c09e-ce8f-4543-b786-4bad5635369e 1690c7830743b27208aa120e336f1b14 {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.RNA-Seq.S18_L007_R1.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R1_001.fastq.gz 3565947301 FASTQ S18_L007_R1 submitted_unaligned CPTAC3 d6d68e19-e2e3-4034-9028-33b91eb7b2e6 ce2f1e19d2f0984d79652f0721569480 {"aliquot_tag": "ALQ_edfa8ee4", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.RNA-Seq.S18_L007_R2.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R2_001.fastq.gz 3689156636 FASTQ S18_L007_R2 submitted_unaligned CPTAC3 1f860ad4-f10d-4483-b625-33ef1a384b81 86f3d8f4dcf610df213857e6ae0112e0 {"aliquot_tag": "ALQ_edfa8ee4", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.RNA-Seq.transcriptome.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.transcriptome.gdc_realn.bam 10524855961 BAM transcriptome harmonized CPTAC3 d36115e7-21ea-4fd5-a2d6-cc677bd437cf 6011a692fc3a0edf80574c064b406c8e {"aliquot_tag": "ALQ_edfa8ee4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WGS.N C3N-01388 PDA WGS blood_normal CPT0088350002 CPT0088350002.WholeGenome.RP-1303.bam 70002234862 BAM submitted_aligned CPTAC3 383f4e44-e015-482d-9d36-cce01bf68945 9eace5614533840ea77aed87740cf55d {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01388.WGS.N.hg38 C3N-01388 PDA WGS blood_normal CPT0088350002 00c9c2c4-17af-41f7-8b2c-52691ddfbb17_gdc_realn.bam 106505980286 BAM harmonized CPTAC3 c44aedac-c110-49ff-a483-a5befa42f851 d4d3c85f4f1bcbd3529eecbfe459990a {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01388.WGS.T C3N-01388 PDA WGS tumor CPT0088320009_1 CPT0088320009_1.WholeGenome.RP-1303.bam 160963480606 BAM submitted_aligned CPTAC3 cfee462b-ce89-4434-a0c5-146c77b47e20 771a095e2813254e4ef31fc4546bbba1 {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WGS.T C3N-01388 PDA WGS tumor CPT0088320009 CPT0088320009.WholeGenome.RP-1303.bam 100475451765 BAM submitted_aligned CPTAC3 4fbe3505-1639-49d8-ad6b-dd3d8131c6f9 bf464f4776bb3ab8b94c74f495c2a83c {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WGS.T.hg38 C3N-01388 PDA WGS tumor CPT0088320009_1 ff400a50-05bf-4e12-8e8d-8cc536ad958f_wgs_gdc_realn.bam 241161258390 BAM harmonized CPTAC3 b3f7109c-56ed-4035-a497-663feb3d2f84 aeb7801cdfd1d07dd6293525309991bd {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WGS.T.hg38 C3N-01388 PDA WGS tumor CPT0088320009 2d43960a-d232-4287-889c-9ffebd333652_gdc_realn.bam 151817518800 BAM harmonized CPTAC3 7504037d-63fc-49b3-a22e-ff38bef57e2e 9374369a8227e74b57209a4134078584 {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WXS.N C3N-01388 PDA WXS blood_normal CPT0088350002 CPT0088350002.WholeExome.RP-1303.bam 34840652430 BAM submitted_aligned CPTAC3 0dde34dd-ce95-415e-8690-56845134ad52 daf449da7b969ac5c6d1e13938c75be6 {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01388.WXS.N.hg38 C3N-01388 PDA WXS blood_normal CPT0088350002 00c9c2c4-17af-41f7-8b2c-52691ddfbb17_gdc_realn.bam 47660957477 BAM harmonized CPTAC3 ad3b2a7e-2e49-48aa-b115-a6a7d01ddaf3 819dfb09df0e32020961ccfec53d6bf9 {"aliquot_tag": "ALQ_58b796ed", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01388.WXS.T C3N-01388 PDA WXS tumor CPT0088320009_1 CPT0088320009_1.WholeExome.RP-1303.bam 66042994859 BAM submitted_aligned CPTAC3 c6312392-19ec-465d-8f0d-7f751ee90ba0 944746d4960d45134ba3f6ec450951d1 {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WXS.T C3N-01388 PDA WXS tumor CPT0088320009 CPT0088320009.WholeExome.RP-1303.bam 40128229831 BAM submitted_aligned CPTAC3 bcec3751-e704-4d88-b581-240560965542 b84d2a1194e997e78e191d5c0da5c93f {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WXS.T.hg38 C3N-01388 PDA WXS tumor CPT0088320009_1 ff400a50-05bf-4e12-8e8d-8cc536ad958f_wxs_gdc_realn.bam 91268997010 BAM harmonized CPTAC3 d265f537-27ae-4bae-a423-5982db188060 9d7e0cbed8f6d192e775d454ea31fa38 {"aliquot_tag": "ALQ_166a6156", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01388.WXS.T.hg38 C3N-01388 PDA WXS tumor CPT0088320009 2d43960a-d232-4287-889c-9ffebd333652_gdc_realn.bam 55861173749 BAM harmonized CPTAC3 ff191d54-68db-4d59-84b0-fafcabe0ee1d 858aab83687ff91174f1fbfb926b58fa {"aliquot_tag": "ALQ_7d459375", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01389.MethArray.Green.T C3N-01389 PDA Methylation_Array tumor CPT0088360009 202184900111_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 64535db8-f044-42ae-90a3-c76306a2cea0 55c028df89ffcad7d63063788ee91479 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.MethArray.Red.T C3N-01389 PDA Methylation_Array tumor CPT0088360009 202184900111_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 67e2dc42-f9a0-4cba-8fc3-f32299e0ce65 e859fd21244c4ac9f0cb380a92d54999 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.miRNA-Seq.S1_L001_R1.T C3N-01389 PDA miRNA-Seq tumor CPT0088360006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 259020610 BAM S1_L001_R1 submitted_unaligned CPTAC3 5755c7e4-1466-467c-8778-c315681177c0 b83aa502697175499021414a5c8e5b58 {"aliquot_tag": "ALQ_187a2824", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.miRNA-Seq.T.hg38 C3N-01389 PDA miRNA-Seq tumor CPT0088360006 8a343728-fed0-4ff1-9cf4-def00289ac78_mirnaseq_gdc_realn.bam 277678019 BAM harmonized CPTAC3 4ae0d4b2-08b0-4b35-87cf-1526406925ad 71fb59318b6901d3d2cafd9646fecd60 {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.RNA-Seq.chimeric.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.chimeric.gdc_realn.bam 31452540 BAM chimeric harmonized CPTAC3 ec20d281-ff02-4b38-88de-8bf60691c1c9 4c39333e7a3dd543796e969df75941d1 {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.RNA-Seq.genomic.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.genomic.gdc_realn.bam 7755144722 BAM genomic harmonized CPTAC3 d5a8897e-994f-4e25-9f29-37299de40bca 887683bbedd948c1b7d71c93a6814ef4 {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.RNA-Seq.S1_L007_R1.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3771421183 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 58d1f578-81ac-4d30-8b4e-1e2ed7fe3286 a7a8ccd340f0e4afe1031a80faae175b {"aliquot_tag": "ALQ_187a2824", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.RNA-Seq.S1_L007_R2.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R2_001.fastq.gz 3956529416 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 59305e62-652d-43b6-85d4-b235093e3881 f03608c6ae37b40dac1604ca38dd7ae9 {"aliquot_tag": "ALQ_187a2824", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.RNA-Seq.transcriptome.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.transcriptome.gdc_realn.bam 10324850651 BAM transcriptome harmonized CPTAC3 5494cc9c-0e5a-4fed-8b2a-19655f617b60 96b271ba744d3c6f146e82b543ef816f {"aliquot_tag": "ALQ_187a2824", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WGS.N C3N-01389 PDA WGS blood_normal CPT0088400002 CPT0088400002.WholeGenome.RP-1303.bam 67179793068 BAM submitted_aligned CPTAC3 91ca11ab-433f-4538-ae82-44bd655de9a6 ad12cc27f401f71d3e44288efe2eb800 {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01389.WGS.N.hg38 C3N-01389 PDA WGS blood_normal CPT0088400002 b74b28ae-8f2c-4961-a8ab-4de81575097b_gdc_realn.bam 101887954760 BAM harmonized CPTAC3 60c5c8e3-3816-4784-8110-9532d490a02b b993443977cadb43533000c1c1b8610b {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01389.WGS.T C3N-01389 PDA WGS tumor CPT0088360009_1 CPT0088360009_1.WholeGenome.RP-1303.bam 119069502194 BAM submitted_aligned CPTAC3 f8ac924a-536f-4cd2-8530-5be672ca7d9a 54580c8909c67b386b166c8fa94e92b1 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WGS.T C3N-01389 PDA WGS tumor CPT0088360009 CPT0088360009.WholeGenome.RP-1303.bam 76816653196 BAM submitted_aligned CPTAC3 c486fb53-3905-4e9e-9e5e-4aaf5c1d4e50 978dff56a01c5b6cc1a8ed184d3684f4 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WGS.T.hg38 C3N-01389 PDA WGS tumor CPT0088360009 047d8148-c320-4a9c-aed3-0049648606f7_gdc_realn.bam 116312396237 BAM harmonized CPTAC3 1b3f001e-5319-4a16-9e23-7ab4f0c640e2 b8dde8278f707e5b7efaf5c7e600057e {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WGS.T.hg38 C3N-01389 PDA WGS tumor CPT0088360009_1 8c5c2643-dab3-4ac1-aad1-c77aea04ba1b_wgs_gdc_realn.bam 177557123767 BAM harmonized CPTAC3 98140676-1106-4c9d-9971-aecbcba41796 62567159ab50346e5614447fddd83026 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WXS.N C3N-01389 PDA WXS blood_normal CPT0088400002 CPT0088400002.WholeExome.RP-1303.bam 36673560260 BAM submitted_aligned CPTAC3 47d54712-417a-48b2-8b70-503ef58a817b f8f73768b0568397431c148b824cd65d {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01389.WXS.N.hg38 C3N-01389 PDA WXS blood_normal CPT0088400002 b74b28ae-8f2c-4961-a8ab-4de81575097b_gdc_realn.bam 49288290722 BAM harmonized CPTAC3 3b0a17bb-f66d-4956-a232-70674f20a906 f037a90fe31b3e3f4a63ed820c3ae107 {"aliquot_tag": "ALQ_8d522925", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01389.WXS.T C3N-01389 PDA WXS tumor CPT0088360009_1 CPT0088360009_1.WholeExome.RP-1303.bam 70625037304 BAM submitted_aligned CPTAC3 a05d7c8a-ce44-49d8-b9fb-20cca331b292 a1e0ae07d2d9da082e2292043a2414d3 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WXS.T C3N-01389 PDA WXS tumor CPT0088360009 CPT0088360009.WholeExome.RP-1303.bam 37635147519 BAM submitted_aligned CPTAC3 89d6341a-409a-488a-af87-35eca2f8f617 c8eba8e3b457ec46bb63b80d0ec3675f {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WXS.T.hg38 C3N-01389 PDA WXS tumor CPT0088360009 047d8148-c320-4a9c-aed3-0049648606f7_gdc_realn.bam 52289053240 BAM harmonized CPTAC3 897cc956-5353-4ed8-97ff-f316bb3cfd74 a034149bdef969cb8a35d92fdb871288 {"aliquot_tag": "ALQ_88c535b5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01389.WXS.T.hg38 C3N-01389 PDA WXS tumor CPT0088360009_1 8c5c2643-dab3-4ac1-aad1-c77aea04ba1b_wxs_gdc_realn.bam 97549148772 BAM harmonized CPTAC3 b3493433-399d-48cd-aa70-da3061506ef2 2e43223ac0518398479344dc992c2df9 {"aliquot_tag": "ALQ_e2254545", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01405.MethArray.Green.A C3N-01405 LUAD Methylation_Array tissue_normal CPT0105370010 203028200014_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0cb3abf8-22d4-47a9-b2bb-bf223aac5473 b1bcc920e8e3402be1bca10d3a54f360 {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.MethArray.Green.T C3N-01405 LUAD Methylation_Array tumor CPT0105330009 202234380062_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 028711e2-d7bb-406b-81a3-fcdc0af77eb4 ed09f2ea9e82f6c307b6626aadb9cb1c {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.MethArray.Red.A C3N-01405 LUAD Methylation_Array tissue_normal CPT0105370010 203028200014_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 fc73ff74-0bde-42f9-a829-c18e692e3a17 f75d15d2e9a332bd6ccca94e4561cc2c {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.MethArray.Red.T C3N-01405 LUAD Methylation_Array tumor CPT0105330009 202234380062_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 99a06ee9-cead-4456-a5ec-c3c7219d639d 7113140e1239a2d9ea8448eefb18cbdc {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.miRNA-Seq.A.hg38 C3N-01405 LUAD miRNA-Seq tissue_normal CPT0105370007 1bfa8546-3916-4009-8906-ab962b16f918_mirnaseq_gdc_realn.bam 328385417 BAM harmonized CPTAC3 c4d5b97e-b854-4582-af39-1af25006f1fe fc58e6e0034519e733e65a19c50b0f18 {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.miRNA-Seq.S15_L007_R1.A C3N-01405 LUAD miRNA-Seq tissue_normal CPT0105370007 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L007_R1_001.unaln.bam 302408346 BAM S15_L007_R1 submitted_unaligned CPTAC3 12cca32f-de94-4f5b-b32c-c0ff609cbc6f 32e42cb14d46bae156e260080444b57d {"aliquot_tag": "ALQ_f7545f34", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.miRNA-Seq.S25_L002_R1.T C3N-01405 LUAD miRNA-Seq tumor CPT0105330006 181113_UNC31-K00269_0164_AH23NNBBXY_ATCACG_S25_L002_R1_001.unaln.bam 252780522 BAM S25_L002_R1 submitted_unaligned CPTAC3 4a1a405f-e158-4b77-8051-1c11cdf0f2fe a52672bba30b896ad4db713a27c23ac0 {"aliquot_tag": "ALQ_75d3c962", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.miRNA-Seq.T.hg38 C3N-01405 LUAD miRNA-Seq tumor CPT0105330006 08d3a85a-b0b0-4618-bcc2-e42d4c876e9d_mirnaseq_gdc_realn.bam 280737432 BAM harmonized CPTAC3 5afd4992-a6a9-4b93-bd85-7a80023af84c 8080d6bad6e93cbad8fdc71f8cde93af {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.RNA-Seq.chimeric.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.chimeric.gdc_realn.bam 68978623 BAM chimeric harmonized CPTAC3 1faa11f7-d857-419f-9768-19aafc81b7c9 d384cef7458ef8678e6b4973fda0af7f {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.RNA-Seq.chimeric.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.chimeric.gdc_realn.bam 37602840 BAM chimeric harmonized CPTAC3 622d70db-fac4-402c-a365-98e1fdaed3c4 48de52e659260abd1d436cc6c8538dd9 {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.RNA-Seq.genomic.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.genomic.gdc_realn.bam 9473974221 BAM genomic harmonized CPTAC3 67096e77-5e4a-40b0-b35a-4017bda37ed6 010c7a7211c0584b1d86537cc5f0472d {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.RNA-Seq.genomic.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.genomic.gdc_realn.bam 8238322869 BAM genomic harmonized CPTAC3 d74a9201-78ef-4c56-8d32-c212ca77b6e8 e14569a0eef155555e80f704ed100ec9 {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.RNA-Seq.S12_L003_R1.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R1_001.fastq.gz 3739953418 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 cb8ddc17-af0a-41e7-938b-643b41ff9cda f1ab8b06e4a4b2a0cf0ba47db82a865a {"aliquot_tag": "ALQ_f7545f34", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.RNA-Seq.S12_L003_R2.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R2_001.fastq.gz 4202411850 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 bb48e028-dc28-4d8b-ba9a-42e847f14a7c 61873c93a57247f6803b14fc8be85051 {"aliquot_tag": "ALQ_f7545f34", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.RNA-Seq.S13_L004_R1.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3826095376 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 e7c2e10c-7db1-4d29-a772-5dc6a9198511 f384c94d6db3d691fe71837eca7ee829 {"aliquot_tag": "ALQ_75d3c962", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.RNA-Seq.S13_L004_R2.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4180720838 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 b23ecd28-c2ba-4842-9c54-36c56b344bff 95821c43c0bc81493509e62705f269fe {"aliquot_tag": "ALQ_75d3c962", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.RNA-Seq.transcriptome.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.transcriptome.gdc_realn.bam 12096059717 BAM transcriptome harmonized CPTAC3 6deee440-1e83-42a9-a064-822762fcc3c4 0aebdc258b9c6c6e463efa22c5495466 {"aliquot_tag": "ALQ_f7545f34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.RNA-Seq.transcriptome.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.transcriptome.gdc_realn.bam 10550099858 BAM transcriptome harmonized CPTAC3 df0a0412-c8e1-4da7-bad5-243967f1b8bf 775f3211122e7f266f12e9e82b9c6fc1 {"aliquot_tag": "ALQ_75d3c962", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.WGS.A C3N-01405 LUAD WGS tissue_normal CPT0105370010 CPT0105370010.WholeGenome.RP-1303.bam 54588810854 BAM submitted_aligned CPTAC3 648ce143-c2c1-43b9-b2f3-86b8dd772b0f 05612ff6f8e599b45bc6260325c4468f {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.WGS.A.hg38 C3N-01405 LUAD WGS tissue_normal CPT0105370010 f7af3bf6-4828-47f9-ae3c-abf49383d460_wgs_gdc_realn.bam 80844032768 BAM harmonized CPTAC3 3849b0bd-6999-4459-8a41-94fb656d2da3 cdfc2bb21718b89c3d8a1edf6e5a20b3 {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.WGS.N C3N-01405 LUAD WGS blood_normal CPT0107800002 CPT0107800002.WholeGenome.RP-1303.bam 65742456544 BAM submitted_aligned CPTAC3 5bf03013-eb86-41fb-823c-3aab5d1b48db 54c28b3d06d0007d72cd5c1f20be49c1 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01405.WGS.N.hg38 C3N-01405 LUAD WGS blood_normal CPT0107800002 c0ecdf32-03f0-4477-b8b8-2076179897c2_wgs_gdc_realn.bam 97764422994 BAM harmonized CPTAC3 981ba4e3-b8da-46fb-a76a-60f54d54b658 60310b3beae5a9851b0b8c8a73057c94 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01405.WGS.T C3N-01405 LUAD WGS tumor CPT0105330009 CPT0105330009.WholeGenome.RP-1303.bam 69110954819 BAM submitted_aligned CPTAC3 cd23a75c-0ab0-4a8e-a019-01dc3ab77cae 9ca55a943dfa1c2840bece92d0fdd90b {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.WGS.T.hg38 C3N-01405 LUAD WGS tumor CPT0105330009 6b88df6d-f5d6-4cb2-a387-21454d087768_wgs_gdc_realn.bam 100078094666 BAM harmonized CPTAC3 32c3b904-9dee-4576-9565-e647955c50a2 d635eb89be1ae4703c9e9cb24a9b07f5 {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.WXS.A C3N-01405 LUAD WXS tissue_normal CPT0105370010 CPT0105370010.WholeExome.RP-1303.bam 33383619889 BAM submitted_aligned CPTAC3 96a9ccee-0d03-434d-9791-450b561b4d74 68e65eea9330405743d908ed29c8e5e9 {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.WXS.A.hg38 C3N-01405 LUAD WXS tissue_normal CPT0105370010 f7af3bf6-4828-47f9-ae3c-abf49383d460_wxs_gdc_realn.bam 44657722060 BAM harmonized CPTAC3 c40181dd-7f5e-41d9-ac92-6f74748c28ee 1f0356c89287f395cb2f8746639f7baf {"aliquot_tag": "ALQ_702bfbd6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01405.WXS.N C3N-01405 LUAD WXS blood_normal CPT0107800002 CPT0107800002.WholeExome.RP-1303.bam 25677655899 BAM submitted_aligned CPTAC3 92461754-e1d9-499f-a5aa-a99298c0f11d 8c41d086562c884a7ebae9f31fd47295 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01405.WXS.N.hg38 C3N-01405 LUAD WXS blood_normal CPT0107800002 c0ecdf32-03f0-4477-b8b8-2076179897c2_wxs_gdc_realn.bam 34672421627 BAM harmonized CPTAC3 fedf7298-36a6-4f2b-ab29-a1d7c7b08065 480606c3f3e7cd70867f9de9aa6fa0e0 {"aliquot_tag": "ALQ_c8469641", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01405.WXS.T C3N-01405 LUAD WXS tumor CPT0105330009 CPT0105330009.WholeExome.RP-1303.bam 30982119407 BAM submitted_aligned CPTAC3 c82eb29c-36b5-4550-aff6-344fc0685ea1 c540703d1b2fac527cd49083529709f7 {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01405.WXS.T.hg38 C3N-01405 LUAD WXS tumor CPT0105330009 6b88df6d-f5d6-4cb2-a387-21454d087768_wxs_gdc_realn.bam 41866456645 BAM harmonized CPTAC3 7950b8fe-e745-4cca-a82c-7ad0d53da17e eda3575fde6a3602a3b2cbd524a8494f {"aliquot_tag": "ALQ_e56cd4f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.MethArray.Green.A C3N-01408 LUAD Methylation_Array tissue_normal CPT0117890009 203027390089_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0beda905-3b35-422f-8687-9663bbb28f09 00edd42664c7e48156f9f2d54e36dacc {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.MethArray.Green.T C3N-01408 LUAD Methylation_Array tumor CPT0117850009 202234370095_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 acd5c4e3-92b8-4d03-a187-b1fbc9b857a2 dd13e8fc4d33e7a7cd98c36b8f854700 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.MethArray.Red.A C3N-01408 LUAD Methylation_Array tissue_normal CPT0117890009 203027390089_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 4636aa51-06a4-4eb8-bc1b-7ef4b3829be6 aca1d700caa4f7d6068a47e13e6e58b9 {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.MethArray.Red.T C3N-01408 LUAD Methylation_Array tumor CPT0117850009 202234370095_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 cb4f8d17-f93f-44b5-9638-e38abb46fb1e 053d8ee4c0f3cd17a2df306cc88e6b74 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.miRNA-Seq.A.hg38 C3N-01408 LUAD miRNA-Seq tissue_normal CPT0117890006 d98d7059-fd4f-4999-99f8-fc62d5baf46b_mirnaseq_gdc_realn.bam 318975318 BAM harmonized CPTAC3 18e1e849-f233-4aee-8052-d6768bbbffdb 4eae224308712eccec2fec72665fff86 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.miRNA-Seq.S25_L005_R1.A C3N-01408 LUAD miRNA-Seq tissue_normal CPT0117890006 181108_UNC31-K00269_0162_AH255GBBXY_ATCACG_S25_L005_R1_001.unaln.bam 292114466 BAM S25_L005_R1 submitted_unaligned CPTAC3 2a60e701-7a26-41e9-a9e5-7fff7080236c 067391da1bc7818c4eb1c3b5a5999dec {"aliquot_tag": "ALQ_e9130b7", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.miRNA-Seq.S3_L004_R1.T C3N-01408 LUAD miRNA-Seq tumor CPT0117850006 181119_UNC31-K00269_0165_AH27WCBBXY_ATTCCT_S3_L004_R1_001.unaln.bam 248473029 BAM S3_L004_R1 submitted_unaligned CPTAC3 209b0557-74e3-40ef-a2f1-236050615adf c1784be14283ea860345cebdce1e91c9 {"aliquot_tag": "ALQ_cb61ddb6", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.miRNA-Seq.T.hg38 C3N-01408 LUAD miRNA-Seq tumor CPT0117850006 07a09938-08bc-4725-ac69-24a196263eb1_mirnaseq_gdc_realn.bam 270405992 BAM harmonized CPTAC3 061abdc7-be9d-4cfc-9c3b-b1f5941b3cbb df882b0a48d2eb042c64a83500841750 {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.RNA-Seq.chimeric.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.chimeric.gdc_realn.bam 177375574 BAM chimeric harmonized CPTAC3 6dd754d5-e600-4f33-8a7f-7e54bccc5c75 c99fa0b9c6b96a05d172b9288edd5890 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.RNA-Seq.chimeric.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.chimeric.gdc_realn.bam 31854731 BAM chimeric harmonized CPTAC3 6a2c4746-4449-4e4c-b1e7-28b31ca5458b 6d521c5eda5c8ef585ceef09c75ecb4f {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.RNA-Seq.genomic.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.genomic.gdc_realn.bam 9600920528 BAM genomic harmonized CPTAC3 33867133-6648-41da-a564-904453d900e9 48c9de60f7390fa4e5fccf9d4b51b7a8 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.RNA-Seq.genomic.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.genomic.gdc_realn.bam 6084510564 BAM genomic harmonized CPTAC3 be5ea5ae-569e-4838-b51d-e1baabc18abc e4adc9590906b68f43e16ac6f0f6780c {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.RNA-Seq.S3_L002_R1.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R1_001.fastq.gz 2728475741 FASTQ S3_L002_R1 submitted_unaligned CPTAC3 f0b0aa2f-6e3c-45b0-a788-c2a4328e4f37 6cf74ac1e9de0206ddb7be9c8ac0fc95 {"aliquot_tag": "ALQ_cb61ddb6", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.RNA-Seq.S3_L002_R2.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R2_001.fastq.gz 3044850834 FASTQ S3_L002_R2 submitted_unaligned CPTAC3 d276bb1c-9658-44dc-b7d2-2574c633cd26 47afc2e418718f297d0d16bd5c2dd46c {"aliquot_tag": "ALQ_cb61ddb6", "sample": "S3", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.RNA-Seq.S8_L008_R1.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R1_001.fastq.gz 4645716880 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 8107b741-856d-4059-8828-25dd1e390023 39e9edcb2a7f0de15579d650f700bb7d {"aliquot_tag": "ALQ_e9130b7", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.RNA-Seq.S8_L008_R2.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R2_001.fastq.gz 4496241140 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 f8af9707-18ab-4e41-8b15-71ab514b1e74 5276b217e6f4ac77d948c68b3599d1c6 {"aliquot_tag": "ALQ_e9130b7", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.RNA-Seq.transcriptome.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.transcriptome.gdc_realn.bam 10296366564 BAM transcriptome harmonized CPTAC3 1a682487-549f-4e0d-a75a-e8b581154961 7d6d425ae1029d726d9077f7f0283249 {"aliquot_tag": "ALQ_e9130b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.RNA-Seq.transcriptome.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.transcriptome.gdc_realn.bam 9269776158 BAM transcriptome harmonized CPTAC3 6a92e0bb-72dc-4689-b724-50397c0d400b 468b74b788049e9a9007195fba9b683a {"aliquot_tag": "ALQ_cb61ddb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.WGS.A C3N-01408 LUAD WGS tissue_normal CPT0117890009 CPT0117890009.WholeGenome.RP-1303.bam 55958599081 BAM submitted_aligned CPTAC3 9f88d34c-e046-4c1c-87d6-1fdff62d2a8a c1f1ecfe81bfc6bfd476ffa227febed4 {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.WGS.A.hg38 C3N-01408 LUAD WGS tissue_normal CPT0117890009 bc6438c3-4305-42a7-99df-28c9ee5fc5d3_wgs_gdc_realn.bam 82840668389 BAM harmonized CPTAC3 48fb83a3-8035-4068-b926-b45f5d82dcdb 91863467130e035ad38884993d7fa544 {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.WGS.N C3N-01408 LUAD WGS blood_normal CPT0119090002 CPT0119090002.WholeGenome.RP-1303.bam 60247309715 BAM submitted_aligned CPTAC3 6b5503d6-619a-4cec-8522-0ddb48f447c8 72c3f41681ad513762468abe9ca764b6 {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01408.WGS.N.hg38 C3N-01408 LUAD WGS blood_normal CPT0119090002 95944c9f-bdad-40ac-ac54-ed1dac6d4d4d_wgs_gdc_realn.bam 88631936059 BAM harmonized CPTAC3 01786f06-6c42-4c11-9269-21ab5cea8017 54c0b790d630674714b45dce28a7c9cc {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01408.WGS.T C3N-01408 LUAD WGS tumor CPT0117850009 CPT0117850009.WholeGenome.RP-1303.bam 67557571238 BAM submitted_aligned CPTAC3 184ce6ae-1477-43cf-a20e-c1e9507c1a3d 472093359657352739e9362785232919 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.WGS.T.hg38 C3N-01408 LUAD WGS tumor CPT0117850009 d6e6a562-263a-44dd-a900-f659ff061e87_wgs_gdc_realn.bam 100292329328 BAM harmonized CPTAC3 d4bcffa4-151f-4ec2-b9bf-1b71d1cc193b 78b06909373b2b4c86361447c468adef {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.WXS.A C3N-01408 LUAD WXS tissue_normal CPT0117890009 CPT0117890009.WholeExome.RP-1303.bam 39609330663 BAM submitted_aligned CPTAC3 53af63d1-af98-4969-8269-13c6f68eb476 b4a3d6ff3b4ef6eb1a3311e7a0ea89da {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.WXS.A.hg38 C3N-01408 LUAD WXS tissue_normal CPT0117890009 bc6438c3-4305-42a7-99df-28c9ee5fc5d3_wxs_gdc_realn.bam 53514597793 BAM harmonized CPTAC3 d0019732-0bec-47ee-b4c8-a3c34c85f6a3 a75415beb6e2e0f626d27e1a936cb93b {"aliquot_tag": "ALQ_9e2e2d26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01408.WXS.N C3N-01408 LUAD WXS blood_normal CPT0119090002 CPT0119090002.WholeExome.RP-1303.bam 30015943037 BAM submitted_aligned CPTAC3 0d9c5b04-19cc-423e-ad91-ec21881fa0d8 dc019b4a7432490b0f7383892be3a4d0 {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01408.WXS.N.hg38 C3N-01408 LUAD WXS blood_normal CPT0119090002 95944c9f-bdad-40ac-ac54-ed1dac6d4d4d_wxs_gdc_realn.bam 40384606961 BAM harmonized CPTAC3 24189352-5e35-45f3-9653-aaa2e2ea935b 0e0a3667fb98bb5662bb1dafedab8111 {"aliquot_tag": "ALQ_b5900d9e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01408.WXS.T C3N-01408 LUAD WXS tumor CPT0117850009 CPT0117850009.WholeExome.RP-1303.bam 37103430951 BAM submitted_aligned CPTAC3 77b33e3d-f339-4f8e-9807-0d830d33940a 22e88a3c710ac51d9baea0dba8746984 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01408.WXS.T.hg38 C3N-01408 LUAD WXS tumor CPT0117850009 d6e6a562-263a-44dd-a900-f659ff061e87_wxs_gdc_realn.bam 49798179246 BAM harmonized CPTAC3 591432f0-ebb1-4974-ad6d-627f31aacc13 f4721a804b752265fa7f2040098a15f3 {"aliquot_tag": "ALQ_5bdec027", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.MethArray.Green.A C3N-01409 LUAD Methylation_Array tissue_normal CPT0117940009 203028200048_R05C01_Grn.idat 13676235 IDAT Green NA CPTAC3 11f6053c-ea51-4be4-a261-c98b8d0e3e4c 3d94174a39e074a7a25b5e33261e0202 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.MethArray.Green.T C3N-01409 LUAD Methylation_Array tumor CPT0117930009 202234360029_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3a9c3bcd-40f2-49f2-9f4c-f8c809c9a448 f147f8cd7a0e91cb857c65a23df6e5f9 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.MethArray.Red.A C3N-01409 LUAD Methylation_Array tissue_normal CPT0117940009 203028200048_R05C01_Red.idat 13676235 IDAT Red NA CPTAC3 8ad141b9-1e53-4dfc-afb4-26925b5e5df2 1c166694d0c66dfcf974596c209913b5 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.MethArray.Red.T C3N-01409 LUAD Methylation_Array tumor CPT0117930009 202234360029_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 570b8a30-04d2-4704-b006-550c4187cc9d 166d2996a6db432bde6aeac971c26a93 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.miRNA-Seq.A.hg38 C3N-01409 LUAD miRNA-Seq tissue_normal CPT0117940006 5f464963-879b-4f5f-b78a-91dfbbef77a7_mirnaseq_gdc_realn.bam 296928438 BAM harmonized CPTAC3 659ae50e-efe1-4200-96e2-9fc187a7c258 ccdcaf0bc9a25c15091c65cb4fade2b9 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.miRNA-Seq.S26_L005_R1.A C3N-01409 LUAD miRNA-Seq tissue_normal CPT0117940006 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L005_R1_001.unaln.bam 272188336 BAM S26_L005_R1 submitted_unaligned CPTAC3 aa51fd9b-a3f6-4b85-9308-b350697e63d2 05e95cc378944cc79ff4110a329c844d {"aliquot_tag": "ALQ_3d5d27a3", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.miRNA-Seq.S4_L004_R1.T C3N-01409 LUAD miRNA-Seq tumor CPT0117930006 181119_UNC31-K00269_0165_AH27WCBBXY_CAAAAG_S4_L004_R1_001.unaln.bam 277433353 BAM S4_L004_R1 submitted_unaligned CPTAC3 62df8258-d2d2-45f0-90ea-73ffb48ca136 9bd981e3cee26f29650868d7a2bda402 {"aliquot_tag": "ALQ_8f7dfbb3", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.miRNA-Seq.T.hg38 C3N-01409 LUAD miRNA-Seq tumor CPT0117930006 04519836-2639-4805-8251-f10cc4eeb462_mirnaseq_gdc_realn.bam 297860553 BAM harmonized CPTAC3 678cab8c-5db5-4788-bc4c-12672c2652e0 d6fa8a3cdfccbea8215bb9d2d83bc9c8 {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.RNA-Seq.chimeric.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.chimeric.gdc_realn.bam 134090538 BAM chimeric harmonized CPTAC3 260a326d-aabe-4822-b751-f8645a8061b5 bd10d53a4d1b5dfd7e1ec30023ad3341 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.RNA-Seq.chimeric.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.chimeric.gdc_realn.bam 178174780 BAM chimeric harmonized CPTAC3 560cdeb2-eb54-4524-bc4e-b2838bf70294 e10760be4568d3c455c30471c72020ce {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.RNA-Seq.genomic.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.genomic.gdc_realn.bam 9186614699 BAM genomic harmonized CPTAC3 45fded74-7db9-4ced-a7f1-9aea40008882 d5cb712bb880c8a7d14e7fcd81db73f3 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.RNA-Seq.genomic.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.genomic.gdc_realn.bam 10631611298 BAM genomic harmonized CPTAC3 230f852c-561b-4d18-866c-0659741c5d90 2ba6aefc5b134f26a7ea04d14bbe35dc {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.RNA-Seq.S10_L008_R1.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R1_001.fastq.gz 4279477648 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 7d9f260e-66c4-4814-b0ee-9a56a6cc04ef 6246df63fbf8e997ea0dfd941db08a64 {"aliquot_tag": "ALQ_3d5d27a3", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.RNA-Seq.S10_L008_R2.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R2_001.fastq.gz 4663858183 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 94f92a10-1308-4460-89ec-2981c175823d 3890ef3d12b00e59f8242b0c95ecca81 {"aliquot_tag": "ALQ_3d5d27a3", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.RNA-Seq.S5_L002_R1.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R1_001.fastq.gz 4788455456 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 05c1b6aa-d224-4fc3-acfb-961bcaa7de92 7004fb87e98d00e14e2d073dd09a9a70 {"aliquot_tag": "ALQ_8f7dfbb3", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.RNA-Seq.S5_L002_R2.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R2_001.fastq.gz 5417194501 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 fcec88ed-9ac7-4209-8a47-c2ee075b0f8e 31a7d77298fda3c0776e145f44912bf9 {"aliquot_tag": "ALQ_8f7dfbb3", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.RNA-Seq.transcriptome.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.transcriptome.gdc_realn.bam 11010740004 BAM transcriptome harmonized CPTAC3 902a90e6-ce5a-449f-a9ac-d71bff7756ba 5d4ff25f10101d61cd190b3bb4976c30 {"aliquot_tag": "ALQ_3d5d27a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.RNA-Seq.transcriptome.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.transcriptome.gdc_realn.bam 11984444742 BAM transcriptome harmonized CPTAC3 0b007f76-7a99-457e-b36f-6c6d13d704d3 bb3292df659d8ea77d8c6f9d08f44605 {"aliquot_tag": "ALQ_8f7dfbb3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.WGS.A C3N-01409 LUAD WGS tissue_normal CPT0117940009 CPT0117940009.WholeGenome.RP-1303.bam 57403276235 BAM submitted_aligned CPTAC3 20caca76-69f9-448a-bc42-27007b5d3182 37cf66182ac9a317502cf3f9d7be2e0d {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.WGS.A.hg38 C3N-01409 LUAD WGS tissue_normal CPT0117940009 9cb78bb5-67c4-440e-af60-c9670e654b32_wgs_gdc_realn.bam 83292092206 BAM harmonized CPTAC3 73be6fe1-11f1-47d7-86d9-b257fe81083e 3080c48764035d1d88512a1cb623bd68 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.WGS.N C3N-01409 LUAD WGS blood_normal CPT0119150002 CPT0119150002.WholeGenome.RP-1303.bam 81097794648 BAM submitted_aligned CPTAC3 23af0ece-6f9e-4231-bf7d-a12654283136 fa64adca84c0fa6e28eb1d645b2414df {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01409.WGS.N.hg38 C3N-01409 LUAD WGS blood_normal CPT0119150002 08438895-c812-4f21-a19e-5325fd71ea4e_wgs_gdc_realn.bam 119446734162 BAM harmonized CPTAC3 1d779fae-bb64-43c0-a270-e6e73da99bde 640d7c00ede31d38f4dff6d71e1c011c {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01409.WGS.T C3N-01409 LUAD WGS tumor CPT0117930009 CPT0117930009.WholeGenome.RP-1303.bam 63348760107 BAM submitted_aligned CPTAC3 b1193f8b-22fe-41e3-9984-681afe8bc182 52cf7155e073c9425b679fa822734f64 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.WGS.T.hg38 C3N-01409 LUAD WGS tumor CPT0117930009 41b2a428-85aa-49c5-830d-580bad9d1f54_wgs_gdc_realn.bam 91686331288 BAM harmonized CPTAC3 f04661c6-b2e8-4278-9d79-d16a2df1dda0 7e9e4e629373d3083b578a40ffe2cc9f {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.WXS.A C3N-01409 LUAD WXS tissue_normal CPT0117940009 CPT0117940009.WholeExome.RP-1303.bam 36876792938 BAM submitted_aligned CPTAC3 d0db24ac-e91d-4c56-95da-fea4f9c0f95c 0c09f2a1712a21f4a94cd5509fed687d {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.WXS.A.hg38 C3N-01409 LUAD WXS tissue_normal CPT0117940009 9cb78bb5-67c4-440e-af60-c9670e654b32_wxs_gdc_realn.bam 49151011338 BAM harmonized CPTAC3 17ba827f-faa8-4e32-8ca6-0ae3200d7633 f48bc4476dfdf77058734500accc7641 {"aliquot_tag": "ALQ_ade23a32", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01409.WXS.N C3N-01409 LUAD WXS blood_normal CPT0119150002 CPT0119150002.WholeExome.RP-1303.bam 38600973038 BAM submitted_aligned CPTAC3 5304dae8-fa42-40c2-8934-220693393ab7 e5deda1c2cbcc38e69cc81ab49952b4b {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01409.WXS.N.hg38 C3N-01409 LUAD WXS blood_normal CPT0119150002 08438895-c812-4f21-a19e-5325fd71ea4e_wxs_gdc_realn.bam 51519647407 BAM harmonized CPTAC3 db9aeba9-4731-47d2-ac26-7b4ed0c2a974 2606c956782ef5f874d458527e4cb51e {"aliquot_tag": "ALQ_bb3c333a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01409.WXS.T C3N-01409 LUAD WXS tumor CPT0117930009 CPT0117930009.WholeExome.RP-1303.bam 41499804527 BAM submitted_aligned CPTAC3 94c63e2d-349d-4e84-a2a1-544fd10a37bc 7a880cf5d317a19eaa1b72a69189a63d {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01409.WXS.T.hg38 C3N-01409 LUAD WXS tumor CPT0117930009 41b2a428-85aa-49c5-830d-580bad9d1f54_wxs_gdc_realn.bam 56413187940 BAM harmonized CPTAC3 e166dbd6-3c34-4b9c-8879-5c47000c8706 972ed2663186f672e87258614f0d1945 {"aliquot_tag": "ALQ_1fc2e622", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.MethArray.Green.A C3N-01410 LUAD Methylation_Array tissue_normal CPT0118010009 203027390113_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 396a6e96-b9f0-4791-84a1-5ab8c39702be 7ef2fd02d1ca0bc775dbcc243cf47639 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.MethArray.Green.T C3N-01410 LUAD Methylation_Array tumor CPT0117970009 202234380099_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a9b727a4-2790-4b81-a051-48fe2df97113 4145818be7473e2d943046d027d2d014 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.MethArray.Red.A C3N-01410 LUAD Methylation_Array tissue_normal CPT0118010009 203027390113_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 65ae0eb6-8269-4573-bcbf-0e5b8b5b9e61 0dfbf71e7739b72244da43fe64fa04c7 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.MethArray.Red.T C3N-01410 LUAD Methylation_Array tumor CPT0117970009 202234380099_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 82091e9e-7839-4f18-bcab-93fd0acf0616 54d53a5089910edb568a44afaaaa2e94 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.miRNA-Seq.A.hg38 C3N-01410 LUAD miRNA-Seq tissue_normal CPT0118010006 a704f9ee-d36d-4078-9fa2-bb7104bf2116_mirnaseq_gdc_realn.bam 264943059 BAM harmonized CPTAC3 8ad3cbac-cdf1-490b-a2d2-4da5330b9d7c f76627545c8d710dca14e877ffe7a03b {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.miRNA-Seq.S27_L005_R1.A C3N-01410 LUAD miRNA-Seq tissue_normal CPT0118010006 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L005_R1_001.unaln.bam 241264413 BAM S27_L005_R1 submitted_unaligned CPTAC3 649dcfc6-cf23-463f-a1b1-8e723ea7929d c0b0306c652e6cf9073b66a8a91cf2bb {"aliquot_tag": "ALQ_24fa89f2", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.miRNA-Seq.S5_L004_R1.T C3N-01410 LUAD miRNA-Seq tumor CPT0117970006 181119_UNC31-K00269_0165_AH27WCBBXY_CAACTA_S5_L004_R1_001.unaln.bam 232605298 BAM S5_L004_R1 submitted_unaligned CPTAC3 d06f73ce-495e-4d0e-8c53-ed65fc82abf0 c915ce8cfc3953594977909d6fabb1a9 {"aliquot_tag": "ALQ_7afd5d73", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.miRNA-Seq.T.hg38 C3N-01410 LUAD miRNA-Seq tumor CPT0117970006 41ca1f33-edb1-4bfc-8b82-93e061046f03_mirnaseq_gdc_realn.bam 246710985 BAM harmonized CPTAC3 b1ed6e4b-3535-4a89-94a2-69605b3b0140 053f72e7c0784c5eae3ba1c5e7727c13 {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.RNA-Seq.chimeric.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.chimeric.gdc_realn.bam 118138447 BAM chimeric harmonized CPTAC3 3b0c4b1f-3f7a-49c1-aeee-fd95bfd5ac2a 1d732555273a9af9321b24436b0c62ef {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.RNA-Seq.chimeric.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.chimeric.gdc_realn.bam 151201218 BAM chimeric harmonized CPTAC3 7f77e27f-3b0a-4ac8-bbc0-9a61ce752a36 dcb31f86b2ced62b7b74aa01d0e26f6b {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.RNA-Seq.genomic.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.genomic.gdc_realn.bam 9015401653 BAM genomic harmonized CPTAC3 7ec6a072-a58b-4fac-b7aa-b107460020d6 402ff0aa38be754e91b3ddb12fe16f81 {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.RNA-Seq.genomic.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.genomic.gdc_realn.bam 9724920067 BAM genomic harmonized CPTAC3 e57d640f-ca77-4526-b50a-5b5fe3b16869 a9670c3556ee6f06752df7cdb454fc33 {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.RNA-Seq.S5_L008_R1.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R1_001.fastq.gz 4020894248 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 2a7ea7e5-8bdb-42a1-92de-1e834613408a a7f68efe807c7d31e43922774ff9ad1c {"aliquot_tag": "ALQ_24fa89f2", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.RNA-Seq.S5_L008_R2.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R2_001.fastq.gz 4411991827 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 f52226c8-d695-404d-b2aa-d62d5ababc57 7a174abb9a4c87a4f4fcd1b69d9374ef {"aliquot_tag": "ALQ_24fa89f2", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.RNA-Seq.S7_L002_R1.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R1_001.fastq.gz 4197600930 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 eb212621-bbd4-41cc-8389-aba6dd151656 6c385b68d3c0ffb2de237eef999eac02 {"aliquot_tag": "ALQ_7afd5d73", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.RNA-Seq.S7_L002_R2.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R2_001.fastq.gz 4770984392 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 6dc7354b-a711-4a5d-9e31-39c70884d08c 4905bd85002bc8da627f82c4d72c3f66 {"aliquot_tag": "ALQ_7afd5d73", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.RNA-Seq.transcriptome.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.transcriptome.gdc_realn.bam 10074605915 BAM transcriptome harmonized CPTAC3 67ed592b-1105-4786-8dcf-1f53a24e84b2 d71c22974d9ead5d23956f4d017a98d0 {"aliquot_tag": "ALQ_24fa89f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.RNA-Seq.transcriptome.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.transcriptome.gdc_realn.bam 11215562495 BAM transcriptome harmonized CPTAC3 ac6684b0-1336-4a13-bec7-5297f11f9079 0b905eeb8bb6cda395f42acca11ec413 {"aliquot_tag": "ALQ_7afd5d73", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.WGS.A C3N-01410 LUAD WGS tissue_normal CPT0118010009 CPT0118010009.WholeGenome.RP-1303.bam 52509271683 BAM submitted_aligned CPTAC3 40944398-53c6-484b-8f32-5ec434988e5f a27d0acc8ac8fba507cfdc63f3bc7850 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.WGS.A.hg38 C3N-01410 LUAD WGS tissue_normal CPT0118010009 72ac40bc-46e6-4e4e-9419-7e99bd8963c2_wgs_gdc_realn.bam 77199933337 BAM harmonized CPTAC3 705eb38d-04c2-4dbe-8dae-2dca8e2c32ae 1f0e29fb33b5c70e47a84a6fa1668049 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.WGS.N C3N-01410 LUAD WGS blood_normal CPT0119210002 CPT0119210002.WholeGenome.RP-1303.bam 73742943542 BAM submitted_aligned CPTAC3 6557d8a8-3ecd-4b91-ac96-458867eebe14 c521e24db95b566dc9bbef129e95001a {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01410.WGS.N.hg38 C3N-01410 LUAD WGS blood_normal CPT0119210002 45c7d850-8bb3-4612-96c3-b0bb98f852bb_wgs_gdc_realn.bam 109312711989 BAM harmonized CPTAC3 add0603d-9625-460c-8a66-b9c81e393089 73514e5693d67e7ab438e71ec32e92a1 {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01410.WGS.T C3N-01410 LUAD WGS tumor CPT0117970009 CPT0117970009.WholeGenome.RP-1303.bam 61134733817 BAM submitted_aligned CPTAC3 509466f8-c315-44b1-852d-d7ab5d667199 80019924e7f4847a046f34ad9c7eb008 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.WGS.T.hg38 C3N-01410 LUAD WGS tumor CPT0117970009 7c2971d4-40a3-41cd-92fd-3a771f40870f_wgs_gdc_realn.bam 89828957137 BAM harmonized CPTAC3 6b1ff167-0d26-42b8-8608-b2e7de1a36d3 75f78e93e2e481ec5790a29075696f13 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.WXS.A C3N-01410 LUAD WXS tissue_normal CPT0118010009 CPT0118010009.WholeExome.RP-1303.bam 39042964944 BAM submitted_aligned CPTAC3 6b91314d-556a-4850-a3c9-63e89c89575c 60e66afc58ae04208b938b0c0eb0770c {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.WXS.A.hg38 C3N-01410 LUAD WXS tissue_normal CPT0118010009 72ac40bc-46e6-4e4e-9419-7e99bd8963c2_wxs_gdc_realn.bam 52438576231 BAM harmonized CPTAC3 13fd4285-a59e-4a75-a323-7ea77214da69 0a4250cb9e858ca4747f8a78d2563ee6 {"aliquot_tag": "ALQ_b4459463", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01410.WXS.N C3N-01410 LUAD WXS blood_normal CPT0119210002 CPT0119210002.WholeExome.RP-1303.bam 28691812717 BAM submitted_aligned CPTAC3 174dea21-2507-4ebb-b447-eafd5f811750 ebb9149d8bdb6546f3a84b963bb7376e {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01410.WXS.N.hg38 C3N-01410 LUAD WXS blood_normal CPT0119210002 45c7d850-8bb3-4612-96c3-b0bb98f852bb_wxs_gdc_realn.bam 37779366513 BAM harmonized CPTAC3 943737e6-0e86-4102-8442-3b667534828e 2fad55ca7fade7ee76d62302915ca97d {"aliquot_tag": "ALQ_c828e754", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01410.WXS.T C3N-01410 LUAD WXS tumor CPT0117970009 CPT0117970009.WholeExome.RP-1303.bam 33694572525 BAM submitted_aligned CPTAC3 4763ba13-fffd-419a-bdac-858ffc4528b7 54ff680bd50c05e2cdd4d936f98c896d {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01410.WXS.T.hg38 C3N-01410 LUAD WXS tumor CPT0117970009 7c2971d4-40a3-41cd-92fd-3a771f40870f_wxs_gdc_realn.bam 45464901730 BAM harmonized CPTAC3 e0f1fe45-5cb3-4c9f-9269-0a4fefed8203 cb9040aad83845a4956af9d613798f45 {"aliquot_tag": "ALQ_ea4240e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.MethArray.Green.A C3N-01411 LSCC Methylation_Array tissue_normal CPT0105430006 203219650218_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a0f24cb2-b7da-4916-8d30-1cccc18fba6f 22e054466febb49f4a224479e2088b14 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.MethArray.Green.T C3N-01411 LSCC Methylation_Array tumor CPT0105420009 202234360029_R06C01_Grn.idat 13676242 IDAT Green NA CPTAC3 4ee295cf-79e7-47fe-8014-cf1f14a2a699 627b06438c2b7e38b8049dd2e24cda18 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.MethArray.Red.A C3N-01411 LSCC Methylation_Array tissue_normal CPT0105430006 203219650218_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 30c01c28-1bc9-423e-b777-69b5812062a1 54e99350af92f64482d7d378e46d3ef5 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.MethArray.Red.T C3N-01411 LSCC Methylation_Array tumor CPT0105420009 202234360029_R06C01_Red.idat 13676242 IDAT Red NA CPTAC3 95e6d654-5918-46de-9842-6bf3db149673 8705b39235ffd45d87b70ec4ff7733e5 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.miRNA-Seq.A.hg38 C3N-01411 LSCC miRNA-Seq tissue_normal CPT0105430009 4ec3633b-39cb-4a27-afda-6c6cb3a2716b_mirnaseq_gdc_realn.bam 178932408 BAM harmonized CPTAC3 a5181894-ee51-418b-8777-31460bf6e528 75a3fd74fd2d62dbdf903822f766cab4 {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.miRNA-Seq.S26_L002_R1.T C3N-01411 LSCC miRNA-Seq tumor CPT0105420006 181113_UNC31-K00269_0164_AH23NNBBXY_CGATGT_S26_L002_R1_001.unaln.bam 253184859 BAM S26_L002_R1 submitted_unaligned CPTAC3 67726376-849a-4df7-8309-48be9923de07 45d8270c59e8534457f00b5502e3cae8 {"aliquot_tag": "ALQ_55b6d06a", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.miRNA-Seq.S4_L005_R1.A C3N-01411 LSCC miRNA-Seq tissue_normal CPT0105430009 181113_UNC31-K00269_0164_AH23NNBBXY_CAAAAG_S4_L005_R1_001.unaln.bam 157312346 BAM S4_L005_R1 submitted_unaligned CPTAC3 602bf824-a0c9-41be-83b3-c1b51a288375 f4ad093c18702e62716ddee5e870a8d7 {"aliquot_tag": "ALQ_f869e44b", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.miRNA-Seq.T.hg38 C3N-01411 LSCC miRNA-Seq tumor CPT0105420006 dc70c1da-2f30-4d35-827c-745ffb327cce_mirnaseq_gdc_realn.bam 283268551 BAM harmonized CPTAC3 9dff38ac-51dc-4142-be11-870ce19de67c c94fe3bbc78b082965743bed539e89ca {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.RNA-Seq.chimeric.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.chimeric.gdc_realn.bam 45410438 BAM chimeric harmonized CPTAC3 7d00f9bc-3ccf-4411-9ba3-8b92d2b89ec3 d520d3a8776b31e1b12f6785539e6b4d {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.RNA-Seq.chimeric.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.chimeric.gdc_realn.bam 31702140 BAM chimeric harmonized CPTAC3 a76b8838-e1a4-4036-b228-9501988679fa 5ca8789dfc2d8c1b4dedec3995bda69f {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.RNA-Seq.genomic.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.genomic.gdc_realn.bam 9104616704 BAM genomic harmonized CPTAC3 fb910558-0551-4b4a-ae9e-7028ad203c6d fc580132fc818814c41599ef7b60191b {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.RNA-Seq.genomic.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.genomic.gdc_realn.bam 7784753459 BAM genomic harmonized CPTAC3 73207794-3715-4a23-81cd-de7409271d3a 748c61a941fe119fe919bb9b53cd3d1a {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.RNA-Seq.S16_L004_R1.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3778238256 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 e87055d9-f513-4b8a-b7d2-41429c116627 84821ea16a60c941422284fe27dd65d6 {"aliquot_tag": "ALQ_55b6d06a", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.RNA-Seq.S16_L004_R2.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3959497381 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 4a4c8e39-00b2-4a7f-987c-73eb1561e681 bdb2fbd340069685527f48a8c5b1198d {"aliquot_tag": "ALQ_55b6d06a", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.RNA-Seq.S4_L001_R1.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3968728740 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 8e181985-87cf-4b03-b1a6-7d2085de9f2d 4d36e29124f811ce70684e4df4ac260a {"aliquot_tag": "ALQ_f869e44b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.RNA-Seq.S4_L001_R2.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4219877915 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 feb66235-feef-4091-903c-8af81d459d17 62f8023c97c08ac13848eeb6b1b98fb6 {"aliquot_tag": "ALQ_f869e44b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.RNA-Seq.transcriptome.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.transcriptome.gdc_realn.bam 10490174536 BAM transcriptome harmonized CPTAC3 ce74b90e-9eea-4110-b5c8-1176b37c7ff8 7d40c27e2d2c69da9d57c933af23ead0 {"aliquot_tag": "ALQ_f869e44b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.RNA-Seq.transcriptome.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.transcriptome.gdc_realn.bam 10525231278 BAM transcriptome harmonized CPTAC3 36471100-dc47-48c5-830f-361bd7a6152d 8159e0c1d489cae9f0bb77c3cee709ff {"aliquot_tag": "ALQ_55b6d06a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.WGS.A C3N-01411 LSCC WGS tissue_normal CPT0105430006 CPT0105430006.WholeGenome.RP-1303.bam 65053536402 BAM submitted_aligned CPTAC3 cdbf7e51-bd95-4c0b-8587-0528401eadec 7b2888b1907082e3e984267ed4ac53ff {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.WGS.A.hg38 C3N-01411 LSCC WGS tissue_normal CPT0105430006 809c752d-b093-4490-8cf6-06ce2f158553_wgs_gdc_realn.bam 93533049669 BAM harmonized CPTAC3 64daf356-b1a2-43f6-8b14-9f302664454b eeb9c18850384d8e9e9efd77c02c9957 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.WGS.N C3N-01411 LSCC WGS blood_normal CPT0107860002 CPT0107860002.WholeGenome.RP-1303.bam 63240637290 BAM submitted_aligned CPTAC3 fab239eb-6c43-4577-af63-19a9bad51890 4abdf0bb14ca92706a76c6c3eae7bcf5 {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01411.WGS.N.hg38 C3N-01411 LSCC WGS blood_normal CPT0107860002 b1dc0f80-5d31-403e-a85a-2afaac9dcddf_wgs_gdc_realn.bam 93048772168 BAM harmonized CPTAC3 b5576da5-a68b-4802-aa1d-48b3864d3b62 482b73289e4b527f205abc8bf9b42ee4 {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01411.WGS.T C3N-01411 LSCC WGS tumor CPT0105420009 CPT0105420009.WholeGenome.RP-1303.bam 69413482539 BAM submitted_aligned CPTAC3 5b7f1775-41aa-48f5-9fe3-55e3fe406999 729ce6d9e0584675c7673a063f4e992c {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.WGS.T.hg38 C3N-01411 LSCC WGS tumor CPT0105420009 61b7c6e3-19c0-4e15-98ea-980978ff2e95_wgs_gdc_realn.bam 101426776439 BAM harmonized CPTAC3 5e17997d-8c52-4771-9b26-4803f9c1c53f 7b208126dc37f1e27c64819189154c06 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.WXS.A C3N-01411 LSCC WXS tissue_normal CPT0105430006 CPT0105430006.WholeExome.RP-1303.bam 31620230226 BAM submitted_aligned CPTAC3 5b47b077-cd5f-47ed-b07d-900b98c0be40 7d66f1ad9a6697d8fd89f1c2b6f2e537 {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.WXS.A.hg38 C3N-01411 LSCC WXS tissue_normal CPT0105430006 809c752d-b093-4490-8cf6-06ce2f158553_wxs_gdc_realn.bam 42795343630 BAM harmonized CPTAC3 094abc04-cf67-4d82-9df0-814c88fb542f abe7dbe4bf81a139c634948d341bd9fc {"aliquot_tag": "ALQ_68d6f9da", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01411.WXS.N C3N-01411 LSCC WXS blood_normal CPT0107860002 CPT0107860002.WholeExome.RP-1303.bam 38306683934 BAM submitted_aligned CPTAC3 9e3d77fe-e6d4-418c-9f86-349beccf69ac 64ff95d0cc552c75c88a789aa578c4e1 {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01411.WXS.N.hg38 C3N-01411 LSCC WXS blood_normal CPT0107860002 b1dc0f80-5d31-403e-a85a-2afaac9dcddf_wxs_gdc_realn.bam 51569469902 BAM harmonized CPTAC3 3fe87e46-aa3d-47ce-9062-a38a810a865a 5003142359fa11141bbd26a558bf354d {"aliquot_tag": "ALQ_470663e1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01411.WXS.T C3N-01411 LSCC WXS tumor CPT0105420009 CPT0105420009.WholeExome.RP-1303.bam 42166090208 BAM submitted_aligned CPTAC3 c8b981fb-462c-47ca-a72a-e23abceb8dc0 3f507a147c0388190503296430044087 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01411.WXS.T.hg38 C3N-01411 LSCC WXS tumor CPT0105420009 61b7c6e3-19c0-4e15-98ea-980978ff2e95_wxs_gdc_realn.bam 57671420131 BAM harmonized CPTAC3 b5017ec2-6360-477d-9c94-dd7c64c0661c 64d73737ba5e07119c4616fe065c27e5 {"aliquot_tag": "ALQ_c509cdfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.MethArray.Green.A C3N-01413 LUAD Methylation_Array tissue_normal CPT0105550009 203027390040_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 78f010b5-4291-44ae-b628-da5b85affb19 4b9dbc0dc37cc7a645f171681be2fe41 {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.MethArray.Green.T C3N-01413 LUAD Methylation_Array tumor CPT0105510009 202234380050_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 64b6cd2f-dc42-43c7-a5cd-099576948cb0 086d1a95fa8f31d13b687e409bb382e6 {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.MethArray.Red.A C3N-01413 LUAD Methylation_Array tissue_normal CPT0105550009 203027390040_R06C01_Red.idat 13676241 IDAT Red NA CPTAC3 3811a83b-9c92-41ff-9e3d-16964c96ac2f 4de81fbda370417ac9c6dba9e086c33b {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.MethArray.Red.T C3N-01413 LUAD Methylation_Array tumor CPT0105510009 202234380050_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 b3b7e90e-a96d-4956-82da-4d146af2b67d 4f5d16422659bb46f5881e2f35bc4ecd {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.miRNA-Seq.A.hg38 C3N-01413 LUAD miRNA-Seq tissue_normal CPT0105550006 51a712f0-b717-4036-b53c-a8c69a12628e_mirnaseq_gdc_realn.bam 268693777 BAM harmonized CPTAC3 d494ac86-a65a-45a3-9250-0d38cd2d0e3e 515dac7398799963b77b82f0475792c1 {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.miRNA-Seq.S28_L005_R1.A C3N-01413 LUAD miRNA-Seq tissue_normal CPT0105550006 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L005_R1_001.unaln.bam 245751836 BAM S28_L005_R1 submitted_unaligned CPTAC3 748acda3-4dd5-4315-9108-ca5c4621091e 2d266f4ea2efbd49d3512ae0272123ac {"aliquot_tag": "ALQ_2ccadfdf", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.miRNA-Seq.S34_L003_R1.T C3N-01413 LUAD miRNA-Seq tumor CPT0105510006 181119_UNC31-K00269_0165_AH27WCBBXY_TAGCTT_S34_L003_R1_001.unaln.bam 240089561 BAM S34_L003_R1 submitted_unaligned CPTAC3 f9cde240-9abd-45ab-bec1-a2d621ed53bc ae45f71f476f1960538bc42263bec88d {"aliquot_tag": "ALQ_d94a791f", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.miRNA-Seq.T.hg38 C3N-01413 LUAD miRNA-Seq tumor CPT0105510006 2e3872ad-a350-4664-a577-251400c325f3_mirnaseq_gdc_realn.bam 258510588 BAM harmonized CPTAC3 630c140d-76f9-4638-85e4-cc093885c982 269caca7ff23ae9eb6b9d5c93900c214 {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.RNA-Seq.chimeric.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.chimeric.gdc_realn.bam 118932415 BAM chimeric harmonized CPTAC3 56156127-e6e1-4619-a551-2c0f48f75af1 916772f80e7c54b83ac864ae0b1d944b {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.RNA-Seq.chimeric.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.chimeric.gdc_realn.bam 98151343 BAM chimeric harmonized CPTAC3 79ce149e-5a8f-42f3-81bd-020ec55dacdd 576d9c6335b558215fdad0cf12c2c2a0 {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.RNA-Seq.genomic.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.genomic.gdc_realn.bam 9053380162 BAM genomic harmonized CPTAC3 80bb0338-8a6d-4625-89ba-18930aa459bf 7744f119a039500bd84ece7ef3e30fd4 {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.RNA-Seq.genomic.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.genomic.gdc_realn.bam 9623723387 BAM genomic harmonized CPTAC3 8023c1ce-a000-4a75-a325-947b7fbe1fa0 20c6bfa4d063614701ba05e20d1f0108 {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.RNA-Seq.S6_L008_R1.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R1_001.fastq.gz 4250845951 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 37d30592-4988-40c0-8b64-5315ded6231b 2d422e0fb1fe70be6252712d3bf66bd0 {"aliquot_tag": "ALQ_2ccadfdf", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.RNA-Seq.S6_L008_R2.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R2_001.fastq.gz 4571261299 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 9c583061-c1f4-4125-a325-44a7cb7cce44 d2be896dfd9b9c757a3ef7b4e81f823b {"aliquot_tag": "ALQ_2ccadfdf", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.RNA-Seq.S7_L008_R1.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R1_001.fastq.gz 3588963934 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 3723de36-3389-49b0-b042-561986d50f17 5b5de8427f5109a5ae2cdeb551f46910 {"aliquot_tag": "ALQ_d94a791f", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.RNA-Seq.S7_L008_R2.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R2_001.fastq.gz 4041076318 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 b3cc7d24-4260-42e5-b682-278743c2ac79 40269d555048612a654bc2bd8ac8c3da {"aliquot_tag": "ALQ_d94a791f", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.RNA-Seq.transcriptome.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.transcriptome.gdc_realn.bam 11204467017 BAM transcriptome harmonized CPTAC3 e67de3f9-5938-48a3-9b97-a22f14af10ac ca8c198f6ac15f81bb11648e2138d0b9 {"aliquot_tag": "ALQ_2ccadfdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.RNA-Seq.transcriptome.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.transcriptome.gdc_realn.bam 9369682388 BAM transcriptome harmonized CPTAC3 6c0e996e-6b1e-426f-a8de-0c1d61d2bd52 c3b402dc276381ce0d289f5a77b5ae2f {"aliquot_tag": "ALQ_d94a791f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.WGS.A C3N-01413 LUAD WGS tissue_normal CPT0105550009 CPT0105550009.WholeGenome.RP-1303.bam 64968788348 BAM submitted_aligned CPTAC3 cf4a2089-91f5-4ccc-a6c7-b225fc26b9cf 9d10cb79f4e1e5d342539b86a5559fce {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.WGS.A.hg38 C3N-01413 LUAD WGS tissue_normal CPT0105550009 a3b2cfbe-fced-4899-9451-5d48b5ea312b_wgs_gdc_realn.bam 95809259340 BAM harmonized CPTAC3 79bf8871-4631-453e-bdc2-9c6d9fc212cc 2afd4f6faea86db8c73892f45a941226 {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.WGS.N C3N-01413 LUAD WGS blood_normal CPT0107980002 CPT0107980002.WholeGenome.RP-1303.bam 70359257862 BAM submitted_aligned CPTAC3 74e59d87-06ee-45f2-8a57-fd2ea4576714 3365d7bdcf5aa907064a27b7f74a39f3 {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01413.WGS.N.hg38 C3N-01413 LUAD WGS blood_normal CPT0107980002 87c5e2eb-49ba-47c4-8f8d-a99d26927ff9_wgs_gdc_realn.bam 103029558776 BAM harmonized CPTAC3 ee6fdbf4-69c1-4f29-88c4-b79d1cfdfa35 56ed2d16480f525f01b19b1323a3fd94 {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01413.WGS.T C3N-01413 LUAD WGS tumor CPT0105510009 CPT0105510009.WholeGenome.RP-1303.bam 66140989650 BAM submitted_aligned CPTAC3 75e82fcb-c862-4de3-a9ff-6005d2120c19 cd68c99490eee266245bc39a270f6c7b {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.WGS.T.hg38 C3N-01413 LUAD WGS tumor CPT0105510009 81f9ede6-25c7-4ade-85de-a5cbeff94b5a_wgs_gdc_realn.bam 98248389867 BAM harmonized CPTAC3 0c82f940-08fc-48be-a64e-3b6b34455d43 3891af22de6a9027b25ade5ea1ae822b {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.WXS.A C3N-01413 LUAD WXS tissue_normal CPT0105550009 CPT0105550009.WholeExome.RP-1303.bam 31996710210 BAM submitted_aligned CPTAC3 dbb264d7-c62e-4d08-b15e-bf7c22b9eb62 9384fd26d619da8c21a4b291300b7c4e {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.WXS.A.hg38 C3N-01413 LUAD WXS tissue_normal CPT0105550009 a3b2cfbe-fced-4899-9451-5d48b5ea312b_wxs_gdc_realn.bam 43724406306 BAM harmonized CPTAC3 018a1f87-4bce-41ca-a20e-ef864efb9f18 0cbd61b4f32eef19ed615547a6cac4bf {"aliquot_tag": "ALQ_bc75c24e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01413.WXS.N C3N-01413 LUAD WXS blood_normal CPT0107980002 CPT0107980002.WholeExome.RP-1303.bam 31680253595 BAM submitted_aligned CPTAC3 09bb2f76-2091-45a4-bf58-86508f7f49b0 1bd931f21b0d4c7a6953484c4fd02212 {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01413.WXS.N.hg38 C3N-01413 LUAD WXS blood_normal CPT0107980002 87c5e2eb-49ba-47c4-8f8d-a99d26927ff9_wxs_gdc_realn.bam 41957041045 BAM harmonized CPTAC3 de9f3c3f-bec0-4446-b5f4-1710bb13ce59 898032a71e63745d4cb032242421728f {"aliquot_tag": "ALQ_336a0e25", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01413.WXS.T C3N-01413 LUAD WXS tumor CPT0105510009 CPT0105510009.WholeExome.RP-1303.bam 36003981154 BAM submitted_aligned CPTAC3 a23324c2-c8ca-4534-bb70-7c5937eef21a cd6abd7cc51316f839368ea58944dce9 {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01413.WXS.T.hg38 C3N-01413 LUAD WXS tumor CPT0105510009 81f9ede6-25c7-4ade-85de-a5cbeff94b5a_wxs_gdc_realn.bam 48621075899 BAM harmonized CPTAC3 d83b9b3e-feee-4bfb-8c6b-0db082c6bace e652db8fec72d16665ad455e61ee1617 {"aliquot_tag": "ALQ_49f5648e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.MethArray.Green.A C3N-01414 LUAD Methylation_Array tissue_normal CPT0105610009 203027390078_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2262aa4c-eb9a-44b6-9a94-cf729813724c d47da076d22e3b64a5cd045a05b1f240 {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.MethArray.Green.T C3N-01414 LUAD Methylation_Array tumor CPT0105600009 202234380069_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2538e226-5e96-46bd-8afc-d9d7a29b16cd 44c33777cf63c86192c922a1bd0bf502 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.MethArray.Red.A C3N-01414 LUAD Methylation_Array tissue_normal CPT0105610009 203027390078_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 60f6d1b5-b2ca-4df0-81ed-b1ca6be352e3 b2fbd2578db39219d64c433d8e9b13e4 {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.MethArray.Red.T C3N-01414 LUAD Methylation_Array tumor CPT0105600009 202234380069_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 4ced638f-0f14-4dbf-8249-a4a6340ed046 d104a78857c4011d574c7288e2ff0a63 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.miRNA-Seq.A.hg38 C3N-01414 LUAD miRNA-Seq tissue_normal CPT0105610006 fac7f355-f2e2-45ce-8c77-a175eefd32a0_mirnaseq_gdc_realn.bam 289847402 BAM harmonized CPTAC3 41133f5d-2f32-4768-86ee-c6c4a12b1e25 be94b224d6cb77d4cce286143d4fbd1d {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.miRNA-Seq.S30_L005_R1.A C3N-01414 LUAD miRNA-Seq tissue_normal CPT0105610006 181108_UNC31-K00269_0162_AH255GBBXY_GCCAAT_S30_L005_R1_001.unaln.bam 265753235 BAM S30_L005_R1 submitted_unaligned CPTAC3 9138038a-18be-4bd6-acac-b8e3b703245f bfb568d4042633b40f8ed0db03f9e822 {"aliquot_tag": "ALQ_5fde0bb1", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.miRNA-Seq.S35_L003_R1.T C3N-01414 LUAD miRNA-Seq tumor CPT0105600006 181119_UNC31-K00269_0165_AH27WCBBXY_GGCTAC_S35_L003_R1_001.unaln.bam 257025478 BAM S35_L003_R1 submitted_unaligned CPTAC3 dac8b12d-c044-4837-a9d1-dc209afc6da9 b22c924fc9ee1a389c5f24546ed8d749 {"aliquot_tag": "ALQ_62be2201", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.miRNA-Seq.T.hg38 C3N-01414 LUAD miRNA-Seq tumor CPT0105600006 578d59ed-fbc2-446e-ba10-d0071804d327_mirnaseq_gdc_realn.bam 276725533 BAM harmonized CPTAC3 31fde208-22d1-4383-89a7-811e491a5556 2ab79e4086e9c3322e6a506e900eaaf0 {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.RNA-Seq.chimeric.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.chimeric.gdc_realn.bam 73800504 BAM chimeric harmonized CPTAC3 79a04648-ac89-4ee1-af92-8520ef6c5328 a8db864f4ee532dde9abc5916fdef918 {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.RNA-Seq.chimeric.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.chimeric.gdc_realn.bam 46477630 BAM chimeric harmonized CPTAC3 a7218c4d-4c52-4359-bdb4-397770fba27d 8a00f8b7e62a805620006f665a854459 {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.RNA-Seq.genomic.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.genomic.gdc_realn.bam 7917711202 BAM genomic harmonized CPTAC3 d9864b3b-11d6-4501-b6a3-eeca18f0a6ac 8d5ea81e14af8dc2f8faaddd5352e339 {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.RNA-Seq.genomic.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.genomic.gdc_realn.bam 8424685295 BAM genomic harmonized CPTAC3 4c89c15b-9334-423b-8a18-0d02759beb22 65bc164eeede1a140a381d81c41f36b3 {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.RNA-Seq.S35_L006_R1.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R1_001.fastq.gz 3884159206 FASTQ S35_L006_R1 submitted_unaligned CPTAC3 bbfffa23-6ba2-4146-b17e-0dac46d39049 8c8342cd9cb5616373a8536b531bda4e {"aliquot_tag": "ALQ_5fde0bb1", "sample": "S35", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.RNA-Seq.S35_L006_R2.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R2_001.fastq.gz 4208871781 FASTQ S35_L006_R2 submitted_unaligned CPTAC3 d2564ee1-2759-4863-86c4-37f5c8eb10fc c9abf0a8e6cddeebaefecb37f7f3575e {"aliquot_tag": "ALQ_5fde0bb1", "sample": "S35", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.RNA-Seq.S6_L008_R1.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R1_001.fastq.gz 3448561046 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 083ddf86-ad21-4447-a896-d39d75fa36b8 d470457981931e872131321588017842 {"aliquot_tag": "ALQ_62be2201", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.RNA-Seq.S6_L008_R2.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R2_001.fastq.gz 3892030268 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 0749fcf3-e147-4c46-b217-145c9f899e98 fb224def9325c06bacd34a34d95e005c {"aliquot_tag": "ALQ_62be2201", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.RNA-Seq.transcriptome.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.transcriptome.gdc_realn.bam 8979468457 BAM transcriptome harmonized CPTAC3 8230236e-9c49-4c87-a1fb-a5b991556bbb f317f3b54b2cbb0c45c01e24d078a3d8 {"aliquot_tag": "ALQ_5fde0bb1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.RNA-Seq.transcriptome.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.transcriptome.gdc_realn.bam 9263411893 BAM transcriptome harmonized CPTAC3 a6db3a10-7b69-4493-9c8d-658af3e76205 c8c40639b532d2316667352fcc8274ae {"aliquot_tag": "ALQ_62be2201", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.WGS.A C3N-01414 LUAD WGS tissue_normal CPT0105610009 CPT0105610009.WholeGenome.RP-1303.bam 61300120074 BAM submitted_aligned CPTAC3 a9f31c52-49f4-408f-be27-b719d730b7a7 507eba4b57fec9391f4c3bc261ede6eb {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.WGS.A.hg38 C3N-01414 LUAD WGS tissue_normal CPT0105610009 9e9cb2b0-2f66-4c7d-b089-636bbf836201_wgs_gdc_realn.bam 89864628324 BAM harmonized CPTAC3 b2312110-ab15-4f81-808b-2da1fc5652eb 559130a865ebba1307edae8738a14201 {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.WGS.N C3N-01414 LUAD WGS blood_normal CPT0108040002 CPT0108040002.WholeGenome.RP-1303.bam 62361140762 BAM submitted_aligned CPTAC3 338842a0-d58a-4bc5-8696-9e6a744a25b7 31f0f2eeb20bc990cf7d9deea5732007 {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01414.WGS.N.hg38 C3N-01414 LUAD WGS blood_normal CPT0108040002 183943be-60df-4118-a3f0-201d8a47ea32_wgs_gdc_realn.bam 92015005598 BAM harmonized CPTAC3 e231ae6c-09d8-44e4-8a45-008a878ab47d 999540b99fe79f46db5805a64ba3b27b {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01414.WGS.T C3N-01414 LUAD WGS tumor CPT0105600009 CPT0105600009.WholeGenome.RP-1303.bam 68653620510 BAM submitted_aligned CPTAC3 c9e60e74-41dd-4845-a67b-921aae101610 2fb5a9d769132294168f005cbc36e011 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.WGS.T.hg38 C3N-01414 LUAD WGS tumor CPT0105600009 b561fdeb-94f7-49ab-addf-0fcf2d85c0c1_wgs_gdc_realn.bam 99762019985 BAM harmonized CPTAC3 c689f0ec-826b-4f69-bfc8-45c916b81e93 e7a7e3510ca86c085b60344bfb6eecc0 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.WXS.A C3N-01414 LUAD WXS tissue_normal CPT0105610009 CPT0105610009.WholeExome.RP-1303.bam 41738181647 BAM submitted_aligned CPTAC3 26546676-4247-4c00-87f6-4fb68317df78 f7bd90cfd8bd9068b2580ded63d13ccf {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.WXS.A.hg38 C3N-01414 LUAD WXS tissue_normal CPT0105610009 9e9cb2b0-2f66-4c7d-b089-636bbf836201_wxs_gdc_realn.bam 56532798684 BAM harmonized CPTAC3 fd25bc25-686a-4b1a-85c9-a0fbf37c9416 27c381a0705919c321fb5b34cef9f0cd {"aliquot_tag": "ALQ_cf611620", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01414.WXS.N C3N-01414 LUAD WXS blood_normal CPT0108040002 CPT0108040002.WholeExome.RP-1303.bam 42076822339 BAM submitted_aligned CPTAC3 41f22eeb-eeb0-462f-9faf-c4a327776ed0 185967bdf5ea14282f23c89dc49a0f28 {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01414.WXS.N.hg38 C3N-01414 LUAD WXS blood_normal CPT0108040002 183943be-60df-4118-a3f0-201d8a47ea32_wxs_gdc_realn.bam 56607425959 BAM harmonized CPTAC3 45b1fbc9-c2e9-45d7-b319-145b351c44c0 bfd6620249b75262e8854a50d26096c3 {"aliquot_tag": "ALQ_27ddc205", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01414.WXS.T C3N-01414 LUAD WXS tumor CPT0105600009 CPT0105600009.WholeExome.RP-1303.bam 31500844614 BAM submitted_aligned CPTAC3 5564e4f4-da4f-49c2-8420-ce2a584ed318 ee22d4d7dc004768622c3244beeca5e0 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01414.WXS.T.hg38 C3N-01414 LUAD WXS tumor CPT0105600009 b561fdeb-94f7-49ab-addf-0fcf2d85c0c1_wxs_gdc_realn.bam 42174857691 BAM harmonized CPTAC3 fc64d455-7ca8-48aa-92dc-c9b79f829195 486113440bd9b2f078deef2f3bce51c9 {"aliquot_tag": "ALQ_f2013f90", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.MethArray.Green.A C3N-01415 LUAD Methylation_Array tissue_normal CPT0105680009 203027390120_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9a4e3770-22db-43c0-9802-a2dfcd5f27d6 98e067e9ec26e9466dd2050896d3e348 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.MethArray.Green.T C3N-01415 LUAD Methylation_Array tumor CPT0105630009 202234380054_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 65174e08-7ac6-4193-abe7-bd260225ac4d 74558cac9bc315f79068e2d03f604c1f {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.MethArray.Red.A C3N-01415 LUAD Methylation_Array tissue_normal CPT0105680009 203027390120_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 c14cceb0-8fda-4c22-a8f1-eecb5883a2b7 c51f060c3026335b0a911045ac536382 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.MethArray.Red.T C3N-01415 LUAD Methylation_Array tumor CPT0105630009 202234380054_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 4cbc1bf6-a6ef-45d9-a37d-40b1a51db25f 5ae68cfde0bf0d255129c904c93ee401 {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.miRNA-Seq.A.hg38 C3N-01415 LUAD miRNA-Seq tissue_normal CPT0105680006 6aab0433-48f8-49bf-a225-0e3630f5a696_mirnaseq_gdc_realn.bam 281560925 BAM harmonized CPTAC3 2104188e-528d-46e3-83bc-360c065a077b 5d3d1f0f08142642e60d78e3e3f893dc {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.miRNA-Seq.S34_L002_R1.T C3N-01415 LUAD miRNA-Seq tumor CPT0105630006 181113_UNC31-K00269_0164_AH23NNBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 269355382 BAM S34_L002_R1 submitted_unaligned CPTAC3 59dab539-fac1-4f98-b154-e82a6fe6779d 4323556fef4a3536c2e39a6ecafed585 {"aliquot_tag": "ALQ_251e58d1", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.miRNA-Seq.S9_L007_R1.A C3N-01415 LUAD miRNA-Seq tissue_normal CPT0105680006 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L007_R1_001.unaln.bam 254760120 BAM S9_L007_R1 submitted_unaligned CPTAC3 e7e3f2a2-acf2-4dca-a7ac-f1ad85b80dfd 763ab31545657b9a857f6d1fad9d989a {"aliquot_tag": "ALQ_52ce69c0", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.miRNA-Seq.T.hg38 C3N-01415 LUAD miRNA-Seq tumor CPT0105630006 7015a6b5-7473-4903-84ab-9b7e436246bf_mirnaseq_gdc_realn.bam 288582363 BAM harmonized CPTAC3 0add4d9c-f4c7-4612-92ca-8c0f855916ce 079691ea994c343c36e9711125d8b4a2 {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.RNA-Seq.chimeric.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.chimeric.gdc_realn.bam 52219291 BAM chimeric harmonized CPTAC3 34210399-fce6-4712-b918-a51f93554ce5 9123c28a8fb9a49102f71aaf492e0cd4 {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.RNA-Seq.chimeric.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.chimeric.gdc_realn.bam 83334617 BAM chimeric harmonized CPTAC3 c0224df9-84a0-4be4-8d9e-5c7b271a3cd8 896904d5b130885ecf37a0e4020097e4 {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.RNA-Seq.genomic.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.genomic.gdc_realn.bam 8028925332 BAM genomic harmonized CPTAC3 abec9145-b7ba-45e0-b477-b4c278b52cc7 aa29751fd5a83ba1b5d611064eb56212 {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.RNA-Seq.genomic.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.genomic.gdc_realn.bam 8819552066 BAM genomic harmonized CPTAC3 3d75ee16-91d7-4148-8ce1-09fbc67060d0 04de0977f20c49b8dc7582fb3b21916b {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.RNA-Seq.S14_L004_R1.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R1_001.fastq.gz 3731598497 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 77b0d409-80b7-47fb-a43e-df98348f7e34 103243e7199d7c8876492e05ed276668 {"aliquot_tag": "ALQ_52ce69c0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.RNA-Seq.S14_L004_R2.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R2_001.fastq.gz 4164646642 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 6cbbe3b0-9dd7-43c7-b7c0-5ea0a106827b 54c5f0d8b6dfb1a37f393e9d8d5f6304 {"aliquot_tag": "ALQ_52ce69c0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.RNA-Seq.S3_L007_R1.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3741499312 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 21fbb374-55f4-4bec-b087-e94275e55154 cd40d3105e7f0235933c01060969425c {"aliquot_tag": "ALQ_251e58d1", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.RNA-Seq.S3_L007_R2.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 4238170824 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 45b86fc1-9bd8-46b6-911d-17a5477edebb 7095d4423abfead0740d4313b97c2080 {"aliquot_tag": "ALQ_251e58d1", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.RNA-Seq.transcriptome.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.transcriptome.gdc_realn.bam 9670913612 BAM transcriptome harmonized CPTAC3 e193017e-0acb-444b-b02f-6bb0d7cdb4f5 b3c61f8c47f867376380601add56513f {"aliquot_tag": "ALQ_52ce69c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.RNA-Seq.transcriptome.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.transcriptome.gdc_realn.bam 11092869592 BAM transcriptome harmonized CPTAC3 8c31f7ac-268d-4655-b3f1-5df4119bed0f 25c679aef4bae2a22583c294793270d5 {"aliquot_tag": "ALQ_251e58d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.WGS.A C3N-01415 LUAD WGS tissue_normal CPT0105680009 CPT0105680009.WholeGenome.RP-1303.bam 58934193412 BAM submitted_aligned CPTAC3 558029f2-3f7d-44a4-b1c5-09f1ae414810 5611b500e8e0b45ea35de23de9330934 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.WGS.A.hg38 C3N-01415 LUAD WGS tissue_normal CPT0105680009 f789f3c0-99bd-4533-a965-3f60d0df875a_wgs_gdc_realn.bam 85562592192 BAM harmonized CPTAC3 23bb89f7-1694-4bb9-ba5f-354be28e5a01 617fe4097669eb878b835e03cfa0240d {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.WGS.N C3N-01415 LUAD WGS blood_normal CPT0108100002 CPT0108100002.WholeGenome.RP-1303.bam 61111853478 BAM submitted_aligned CPTAC3 50a4a0b2-bb2d-45f1-a09a-33e036663c1a 63f52d06a82f303aa6e6cf1af7539caf {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01415.WGS.N.hg38 C3N-01415 LUAD WGS blood_normal CPT0108100002 741b4489-01b4-465d-a82f-8ac84fb1222a_wgs_gdc_realn.bam 90689167104 BAM harmonized CPTAC3 c8793c70-5eef-40ff-a809-e3e119cde00e 9558389ffb3f71507ec5d2feed195fac {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01415.WGS.T C3N-01415 LUAD WGS tumor CPT0105630009 CPT0105630009.WholeGenome.RP-1303.bam 62398143306 BAM submitted_aligned CPTAC3 93857bcf-836c-4d51-9185-d63593fb5744 2c6b7b66708eb58b1fea68908df2316d {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.WGS.T.hg38 C3N-01415 LUAD WGS tumor CPT0105630009 a386fafe-f46f-429d-bf4b-9e690dc806fe_wgs_gdc_realn.bam 91813410969 BAM harmonized CPTAC3 98252d4f-8891-4e33-afe9-2dfc594150b5 ffcb24759e1b6706cad6be528f28bbfa {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.WXS.A C3N-01415 LUAD WXS tissue_normal CPT0105680009 CPT0105680009.WholeExome.RP-1303.bam 35318122294 BAM submitted_aligned CPTAC3 6bb38a2f-a419-4584-85f9-e1a628617efa d188b198fe11706848b666603d7059f0 {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.WXS.A.hg38 C3N-01415 LUAD WXS tissue_normal CPT0105680009 f789f3c0-99bd-4533-a965-3f60d0df875a_wxs_gdc_realn.bam 47872331926 BAM harmonized CPTAC3 f1a47208-77cd-43b8-80d7-163ef8a433c5 3e9a7842b0ab2790dcaea8db72da3f5d {"aliquot_tag": "ALQ_c2717451", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01415.WXS.N C3N-01415 LUAD WXS blood_normal CPT0108100002 CPT0108100002.WholeExome.RP-1303.bam 49008182210 BAM submitted_aligned CPTAC3 791bf9bb-1f06-47fd-a774-c520c4f87472 7e7a4f4833c5614e84ad9d415babaf0a {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01415.WXS.N.hg38 C3N-01415 LUAD WXS blood_normal CPT0108100002 741b4489-01b4-465d-a82f-8ac84fb1222a_wxs_gdc_realn.bam 64763809362 BAM harmonized CPTAC3 44ea40a7-a4b2-4a8e-969d-c1d477bc5647 fc1c1bcfd9b59d6a42abdbf4fa5edb90 {"aliquot_tag": "ALQ_1901b760", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01415.WXS.T C3N-01415 LUAD WXS tumor CPT0105630009 CPT0105630009.WholeExome.RP-1303.bam 44114328511 BAM submitted_aligned CPTAC3 72d00f7a-ac0b-4ccc-94c4-d7bd40e279eb e4ce3fec8fcc8c0b28aea60c58311df0 {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01415.WXS.T.hg38 C3N-01415 LUAD WXS tumor CPT0105630009 a386fafe-f46f-429d-bf4b-9e690dc806fe_wxs_gdc_realn.bam 59289793995 BAM harmonized CPTAC3 b60bda2a-2b47-47ea-9682-19d13f5dcea0 61d54a1e9c36cc761a903dfc0e73f36e {"aliquot_tag": "ALQ_b5a14540", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.MethArray.Green.A C3N-01416 LUAD Methylation_Array tissue_normal CPT0105740009 203027390113_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1606f210-92a3-4648-b24d-139aa680f951 8dd061d31ce43312d505ab76fdbf1959 {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.MethArray.Green.T C3N-01416 LUAD Methylation_Array tumor CPT0105710009 202234380094_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1475a0cf-eea3-4e4e-bdd0-8134b63b63f1 1543e092fa4be507db566de8e1705f72 {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.MethArray.Red.A C3N-01416 LUAD Methylation_Array tissue_normal CPT0105740009 203027390113_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 d6fd6fb7-2f83-498a-b626-090e011cd85f 62f1a2e6ddb0700129b53c5e2eda1040 {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.MethArray.Red.T C3N-01416 LUAD Methylation_Array tumor CPT0105710009 202234380094_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 9f21c07c-4145-412f-b657-6682f2d251c8 452efd8e12a13af36c25370366b1ab1d {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.miRNA-Seq.A.hg38 C3N-01416 LUAD miRNA-Seq tissue_normal CPT0105740006 d4fd275e-5110-4c1e-aaa0-33ca820aa0b0_mirnaseq_gdc_realn.bam 319378929 BAM harmonized CPTAC3 1e12a080-9d67-45a2-b716-bfc29289e220 7472c346177b511a0966422739dccbd9 {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.miRNA-Seq.S31_L005_R1.A C3N-01416 LUAD miRNA-Seq tissue_normal CPT0105740006 181108_UNC31-K00269_0162_AH255GBBXY_CAGATC_S31_L005_R1_001.unaln.bam 287881818 BAM S31_L005_R1 submitted_unaligned CPTAC3 d0182cc1-58a0-4368-8b33-1650207ad086 8fe11e8440a5afdd6908393353736b11 {"aliquot_tag": "ALQ_5c625764", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.miRNA-Seq.S36_L003_R1.T C3N-01416 LUAD miRNA-Seq tumor CPT0105710006 181119_UNC31-K00269_0165_AH27WCBBXY_CTTGTA_S36_L003_R1_001.unaln.bam 178775226 BAM S36_L003_R1 submitted_unaligned CPTAC3 ebdce905-ed8c-45f4-830d-b33cdbcd14ed 335ae18a0ba66f01b8f87abf4b57cb83 {"aliquot_tag": "ALQ_9482d814", "sample": "S36", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.miRNA-Seq.T.hg38 C3N-01416 LUAD miRNA-Seq tumor CPT0105710006 9fb7cd36-6956-4d4f-9d61-94d1a05e6e4e_mirnaseq_gdc_realn.bam 195240335 BAM harmonized CPTAC3 f1ff99cb-635e-4a31-8774-e579063a82cd 8a9a2aed1388fd2c155dd2d5f7e3c23e {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.RNA-Seq.chimeric.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.chimeric.gdc_realn.bam 99598413 BAM chimeric harmonized CPTAC3 f9d4b1d8-45a5-49df-9476-41d631b53a80 a5bd8254065e6a5375d3dbb2be591bde {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.RNA-Seq.chimeric.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.chimeric.gdc_realn.bam 72043906 BAM chimeric harmonized CPTAC3 b1d59943-6ce2-4282-b7e8-82572e25f90f ea2a05b01e3caf8e6019e94e2aa0f68f {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.RNA-Seq.genomic.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.genomic.gdc_realn.bam 8991978718 BAM genomic harmonized CPTAC3 4ec04f5b-4ae4-4c2f-beb2-3e15746717cc 32e72a0f3653b94870bd20988c53c53b {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.RNA-Seq.genomic.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.genomic.gdc_realn.bam 10289537860 BAM genomic harmonized CPTAC3 d9523d66-715e-4d96-b65f-7eea0b901047 6ff31101e5afbcefb75e1af4cccfecb0 {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.RNA-Seq.S2_L007_R1.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4629598212 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 5ff9e7d8-7662-4e2c-9e80-83e70e8ef934 b74b1384ce86929544e8dde09c06816b {"aliquot_tag": "ALQ_9482d814", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.RNA-Seq.S2_L007_R2.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5200400455 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 d0d38a99-79c6-40ca-866e-119dc61e8817 a9f861cccda5553ffaa05b956ea747a6 {"aliquot_tag": "ALQ_9482d814", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.RNA-Seq.S3_L007_R1.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R1_001.fastq.gz 4234679336 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 b8002bd5-4758-43e0-8be9-18da4c513cd4 7a0766428b270bcf59f1915976b49731 {"aliquot_tag": "ALQ_5c625764", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.RNA-Seq.S3_L007_R2.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R2_001.fastq.gz 4702801558 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 a171d956-4934-438d-b19d-1b2d7cbe12f5 604698e4a293e7f0d6625f380329785c {"aliquot_tag": "ALQ_5c625764", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.RNA-Seq.transcriptome.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.transcriptome.gdc_realn.bam 11090024312 BAM transcriptome harmonized CPTAC3 13ae2856-f886-4621-9241-ae8bb8e11cf0 73fdddd36b0a81d39868519f10b1d4bd {"aliquot_tag": "ALQ_5c625764", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.RNA-Seq.transcriptome.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.transcriptome.gdc_realn.bam 12685198224 BAM transcriptome harmonized CPTAC3 49af5ea8-f90e-4503-a278-08de40887a28 bdb285e29374770283c1b885643bfeff {"aliquot_tag": "ALQ_9482d814", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.WGS.A C3N-01416 LUAD WGS tissue_normal CPT0105740009 CPT0105740009.WholeGenome.RP-1303.bam 52694397961 BAM submitted_aligned CPTAC3 78d5f1f9-f685-49c2-86b1-6119afc42c85 fc9d868edd0771dbee6d5390f2ede171 {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.WGS.A.hg38 C3N-01416 LUAD WGS tissue_normal CPT0105740009 c1f2d7df-cfd6-4015-affb-a2f7c2b74ad7_wgs_gdc_realn.bam 77724058652 BAM harmonized CPTAC3 3c507951-d620-4406-a75f-a1f6cec71362 528ee3a38ec7b9ee59c0da29db9a44dc {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.WGS.N C3N-01416 LUAD WGS blood_normal CPT0108160002 CPT0108160002.WholeGenome.RP-1303.bam 60955416891 BAM submitted_aligned CPTAC3 180daccb-79ee-4335-9717-f6a27ebe4178 4c5d5148d68321591eb5fc3bff3188c2 {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01416.WGS.N.hg38 C3N-01416 LUAD WGS blood_normal CPT0108160002 34a91d65-a389-4d30-ba52-722d20799fa8_wgs_gdc_realn.bam 88232966345 BAM harmonized CPTAC3 274c97d1-0762-4686-8f16-b1c26a45d0ca 0a7ac24adca482e3bac6949363548f81 {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01416.WGS.T C3N-01416 LUAD WGS tumor CPT0105710009 CPT0105710009.WholeGenome.RP-1303.bam 65110940095 BAM submitted_aligned CPTAC3 f836ddc0-1b70-4485-8596-21e6b3df1bf8 5ca436c5df5e9d524e689356a36617fc {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.WGS.T.hg38 C3N-01416 LUAD WGS tumor CPT0105710009 19259be0-acf2-4826-b674-fea6f2fe6889_wgs_gdc_realn.bam 95373112776 BAM harmonized CPTAC3 32dfc156-010a-4ac5-adf0-a2cb8be50030 03331524823d2d7106af88b98214f1b8 {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.WXS.A C3N-01416 LUAD WXS tissue_normal CPT0105740009 CPT0105740009.WholeExome.RP-1303.bam 26952722473 BAM submitted_aligned CPTAC3 6a0d23c7-de21-473a-965f-92c9ec6e76ad afc0f4e26c37bf20de5a21814def908d {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.WXS.A.hg38 C3N-01416 LUAD WXS tissue_normal CPT0105740009 c1f2d7df-cfd6-4015-affb-a2f7c2b74ad7_wxs_gdc_realn.bam 36882227856 BAM harmonized CPTAC3 126a09a5-c538-4417-b622-c932e62c4e62 5cabedb8a9782970e72d83ecd94a9c1f {"aliquot_tag": "ALQ_ccdd4af5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01416.WXS.N C3N-01416 LUAD WXS blood_normal CPT0108160002 CPT0108160002.WholeExome.RP-1303.bam 37371135593 BAM submitted_aligned CPTAC3 347c6989-0fb6-414d-a83e-fa24b9974b47 da4b17defca622fceb60f2fa41c444cc {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01416.WXS.N.hg38 C3N-01416 LUAD WXS blood_normal CPT0108160002 34a91d65-a389-4d30-ba52-722d20799fa8_wxs_gdc_realn.bam 49112937400 BAM harmonized CPTAC3 ac7071e8-a335-4ba0-bfc3-5ffcd12334bc bdafe8d349569d08113d58b52745983d {"aliquot_tag": "ALQ_964142c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01416.WXS.T C3N-01416 LUAD WXS tumor CPT0105710009 CPT0105710009.WholeExome.RP-1303.bam 23449569133 BAM submitted_aligned CPTAC3 da201ede-2d77-45cd-be63-46f7596d0403 e83e8e208bd4f4b053c05ba051bf703d {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01416.WXS.T.hg38 C3N-01416 LUAD WXS tumor CPT0105710009 19259be0-acf2-4826-b674-fea6f2fe6889_wxs_gdc_realn.bam 31795779041 BAM harmonized CPTAC3 d90450bc-aa17-4938-b216-ab28e8815c36 9daf15ecd1fa4c530db7a3ed503c03aa {"aliquot_tag": "ALQ_43dc585", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.MethArray.Green.T C3N-01417 LUAD Methylation_Array tumor CPT0105780009 203219650211_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 e0987a09-85db-4b5f-97ef-a9ad69466ae2 8ee2c437b67d4ac5075efa8f2fe0b4b0 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.MethArray.Red.T C3N-01417 LUAD Methylation_Array tumor CPT0105780009 203219650211_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 e6c197c9-1e57-4cd5-8378-a2ff585d6015 b7606bb46197dac8218abef31df6d081 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.miRNA-Seq.A.hg38 C3N-01417 LUAD miRNA-Seq tissue_normal CPT0105790006 29a466c5-bd9c-44a4-b8f7-fcb89d7be84b_mirnaseq_gdc_realn.bam 333116105 BAM harmonized CPTAC3 dc708479-7a5f-42b3-82b2-9dd7aa2a602d 149addb91e48114c6d9a131b6c4c4cc8 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.miRNA-Seq.S38_L003_R1.A C3N-01417 LUAD miRNA-Seq tissue_normal CPT0105790006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTAGCT_S38_L003_R1_001.unaln.bam 305745801 BAM S38_L003_R1 submitted_unaligned CPTAC3 3c22344a-f315-4ee1-82d1-0ac27cdf99d2 6644bc17c444479946d5c61190a299d9 {"aliquot_tag": "ALQ_a4f293d5", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.miRNA-Seq.S7_L002_R1.T C3N-01417 LUAD miRNA-Seq tumor CPT0105780006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGATC_S7_L002_R1_001.unaln.bam 215783445 BAM S7_L002_R1 submitted_unaligned CPTAC3 a6b1af7c-a965-43d5-8cbe-0ca8fb113a79 a822bbc74e0331061fe68044e7110fba {"aliquot_tag": "ALQ_9992ba65", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.miRNA-Seq.T.hg38 C3N-01417 LUAD miRNA-Seq tumor CPT0105780006 6db76d1e-96cd-4970-93bf-6c9b79929ffa_mirnaseq_gdc_realn.bam 231830173 BAM harmonized CPTAC3 b1dc7d14-9c2e-4ba9-a045-334069a51c9c 53d6fb20971e8e9d443d81d733ad6043 {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.RNA-Seq.chimeric.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.chimeric.gdc_realn.bam 29556386 BAM chimeric harmonized CPTAC3 501925ce-437b-4a24-8c98-4bb39ab5d146 0c6fe32cea379d2ac7c29ac4c471ea69 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.RNA-Seq.chimeric.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.chimeric.gdc_realn.bam 29593679 BAM chimeric harmonized CPTAC3 1f4ef151-4fc1-4c20-a51e-7631338e1f9c 0f8ac09a4bf24810ee7f9f2b59df90be {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.RNA-Seq.genomic.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.genomic.gdc_realn.bam 10807902295 BAM genomic harmonized CPTAC3 e0841c07-150b-47e6-9881-8385028a5e61 f2c197101c0df830e660c92ce74c5365 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.RNA-Seq.genomic.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.genomic.gdc_realn.bam 11102385446 BAM genomic harmonized CPTAC3 b443b6fc-3159-4762-8cb8-6a791903561e 309909c539b99417ec17d157d76a6b1d {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.RNA-Seq.S1_L001_R1.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3768015532 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 39f8264a-bf45-44f2-9738-dc1f5c03b7c3 270035ecf97961b5efe94dcba14dcc49 {"aliquot_tag": "ALQ_9992ba65", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.RNA-Seq.S1_L001_R2.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R2_001.fastq.gz 4160511963 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 a30ace3b-f582-4852-b0ff-3611c721fa18 df85c13dafa65291d3fbdd019e6d3fe4 {"aliquot_tag": "ALQ_9992ba65", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.RNA-Seq.S2_L001_R1.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R1_001.fastq.gz 4076450368 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 59e1bd20-c638-42b1-8ff6-995edca4f72c 3bc26a462d45008f5ea05a4a84155948 {"aliquot_tag": "ALQ_a4f293d5", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.RNA-Seq.S2_L001_R2.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R2_001.fastq.gz 4410655751 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 3d3ee85a-d7f1-4b95-87a1-3baa528db7ee 7f00f1492de3431bdf4d7f742e51a53e {"aliquot_tag": "ALQ_a4f293d5", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.RNA-Seq.transcriptome.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.transcriptome.gdc_realn.bam 11147874547 BAM transcriptome harmonized CPTAC3 aa397a49-3c6a-4e4a-aec5-22a37b387199 f03275c4de57d8a07589855c365deb73 {"aliquot_tag": "ALQ_a4f293d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.RNA-Seq.transcriptome.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.transcriptome.gdc_realn.bam 9601299650 BAM transcriptome harmonized CPTAC3 42494443-f834-425a-941e-d8d1e5e06720 fcf28494da94011e3bdf2615743e85e3 {"aliquot_tag": "ALQ_9992ba65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.WGS.A C3N-01417 LUAD WGS tissue_normal CPT0105790009 CPT0105790009.WholeGenome.RP-1303.bam 55599543061 BAM submitted_aligned CPTAC3 59a7fc97-7136-4dbd-9037-3d4f4385e097 30711a65413491935a01c178bd642fa6 {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.WGS.A.hg38 C3N-01417 LUAD WGS tissue_normal CPT0105790009 5301d77c-29e2-4b40-bfda-49021e1913cc_wgs_gdc_realn.bam 81886257957 BAM harmonized CPTAC3 6aee97aa-965c-4ba2-bf5f-5eb3b565aba3 5d1057e7ab3201bdaddea3df4c916eb0 {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.WGS.N C3N-01417 LUAD WGS blood_normal CPT0108220004 CPT0108220004.WholeGenome.RP-1303.bam 60305899415 BAM submitted_aligned CPTAC3 f078d9e2-2d76-4d04-b510-1620b7466f85 1c38d139922542b25cfc62d87ebcf314 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01417.WGS.N.hg38 C3N-01417 LUAD WGS blood_normal CPT0108220004 f37e81f6-1671-4e3d-a651-7c6f9458de96_wgs_gdc_realn.bam 89342796480 BAM harmonized CPTAC3 ba069865-dc04-4bd7-a965-7fb4aa70af99 2d926a9dd77fc4948e0c72f18b5a6562 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01417.WGS.T C3N-01417 LUAD WGS tumor CPT0105780009 CPT0105780009.WholeGenome.RP-1303.bam 63237634726 BAM submitted_aligned CPTAC3 27762829-cbab-4abd-b3f8-473ca4299b27 ec287c35927afe2bd06b983408d5c1ed {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.WGS.T.hg38 C3N-01417 LUAD WGS tumor CPT0105780009 9aff0957-aa05-46ff-8e72-f1766e9f011a_wgs_gdc_realn.bam 92593779068 BAM harmonized CPTAC3 7f366f4d-dc22-4277-852f-2f41c67f1cd0 06155b392040f67ef40327f5a3cfae86 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.WXS.A C3N-01417 LUAD WXS tissue_normal CPT0105790009 CPT0105790009.WholeExome.RP-1303.bam 20284070140 BAM submitted_aligned CPTAC3 0a85ca48-7679-4d21-b59f-1db90b3f5342 7f57943124b99eff936a1eb7670d810a {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.WXS.A.hg38 C3N-01417 LUAD WXS tissue_normal CPT0105790009 5301d77c-29e2-4b40-bfda-49021e1913cc_wxs_gdc_realn.bam 27629234279 BAM harmonized CPTAC3 a7616be3-f9bb-460d-9fde-590d340f65cc c207782f534212d3b8f16afb5660c8fd {"aliquot_tag": "ALQ_344d8e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01417.WXS.N C3N-01417 LUAD WXS blood_normal CPT0108220004 CPT0108220004.WholeExome.RP-1303.bam 24137196286 BAM submitted_aligned CPTAC3 8a50f3de-16a4-466d-b612-699283bf3822 982eaccb82aed8ff98d9be5d37b624b4 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01417.WXS.N.hg38 C3N-01417 LUAD WXS blood_normal CPT0108220004 f37e81f6-1671-4e3d-a651-7c6f9458de96_wxs_gdc_realn.bam 33377639317 BAM harmonized CPTAC3 b0e55d39-f823-42a5-a1dc-6be52fdb54eb 4bb1bbb7df97c9927b4a50fc7ee32749 {"aliquot_tag": "ALQ_c36339b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01417.WXS.T C3N-01417 LUAD WXS tumor CPT0105780009 CPT0105780009.WholeExome.RP-1303.bam 21688050232 BAM submitted_aligned CPTAC3 a681fdff-ea50-4cd7-9c28-720098dffd62 f166319b7df898bbae8c51355a813fbc {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01417.WXS.T.hg38 C3N-01417 LUAD WXS tumor CPT0105780009 9aff0957-aa05-46ff-8e72-f1766e9f011a_wxs_gdc_realn.bam 30119843260 BAM harmonized CPTAC3 1f71eccc-f761-42b6-9be7-84810f109131 d9081130bf3293db3d88ff398a79e6b3 {"aliquot_tag": "ALQ_92da7f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.ADD_716278e5.MethArray.Green.A C3N-01419 LUAD Methylation_Array tissue_normal CPT0118060008 203273630048_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ad890daa-667b-4a11-989c-24708529b549 c4a2a5189b2e4a51d0a1a9420053b429 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.ADD_716278e5.MethArray.Red.A C3N-01419 LUAD Methylation_Array tissue_normal CPT0118060008 203273630048_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 4a1ea9d8-30e6-4282-8b05-373843c842b5 cc6b2c0ff47be30f235f364c3cc1554c {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.ADD_716278e5.WGS.A C3N-01419 LUAD WGS tissue_normal CPT0118060008 CPT0118060008.WholeGenome.RP-1303.bam 57693916713 BAM submitted_aligned CPTAC3 5f48fc7c-cffd-488e-a7d2-0b39b62f9db2 61a18698f2d3f3fba4b14e76ee0efd41 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.ADD_716278e5.WGS.A.hg38 C3N-01419 LUAD WGS tissue_normal CPT0118060008 41fbeb7b-f0e1-4923-99d4-bf779f8459f2_wgs_gdc_realn.bam 84508537406 BAM harmonized CPTAC3 f8c153df-4c3d-43b9-b566-dba5e7402d4a 8840539f4bad17170430c1b251148cab {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.ADD_716278e5.WXS.A C3N-01419 LUAD WXS tissue_normal CPT0118060008 CPT0118060008.WholeExome.RP-1303.bam 19620688707 BAM submitted_aligned CPTAC3 6428a44f-bbc5-4a1a-a076-918ea085054d 026e5e71897df9bf48a70b96cc2ac4a2 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.ADD_716278e5.WXS.A.hg38 C3N-01419 LUAD WXS tissue_normal CPT0118060008 41fbeb7b-f0e1-4923-99d4-bf779f8459f2_wxs_gdc_realn.bam 26719876766 BAM harmonized CPTAC3 bbd7996a-16de-44ee-b0d7-959819b02e9b f5a9790e8ff6a047f147b629581f2515 {"aliquot_tag": "ADD_716278e5", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.MethArray.Green.T C3N-01419 LUAD Methylation_Array tumor CPT0118040009 203220070151_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 69fed520-468c-4014-9a62-a7eff168fe56 66c6143e8caaa31f5c5916dc714667dd {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.MethArray.Red.T C3N-01419 LUAD Methylation_Array tumor CPT0118040009 203220070151_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 48e7bbd4-6be2-462b-802c-aa72b695156d 2757908ad49435e3d63c1918ec5d87e0 {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.miRNA-Seq.A.hg38 C3N-01419 LUAD miRNA-Seq tissue_normal CPT0118060005 a3b47e97-bc4c-4415-bec4-cd7be6de9b63_mirnaseq_gdc_realn.bam 261040786 BAM harmonized CPTAC3 9911b26d-1535-405c-8a07-348e67db1e34 edfdc65121dcd1c7c6f10302ee7983fd {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.miRNA-Seq.S10_L002_R1.T C3N-01419 LUAD miRNA-Seq tumor CPT0118040006 190108_UNC31-K00269_0176_AHYGLVBBXX_TAGCTT_S10_L002_R1_001.unaln.bam 217628396 BAM S10_L002_R1 submitted_unaligned CPTAC3 636a2829-8a7f-46bb-a382-13726c393ef6 ccd61f8cf7b14c69bafd39a7a9851076 {"aliquot_tag": "ALQ_ec1a0682", "sample": "S10", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.miRNA-Seq.S39_L003_R1.A C3N-01419 LUAD miRNA-Seq tissue_normal CPT0118060005 190108_UNC31-K00269_0176_AHYGLVBBXX_CTATAC_S39_L003_R1_001.unaln.bam 241720051 BAM S39_L003_R1 submitted_unaligned CPTAC3 56e91617-a1e8-467b-8fec-53a6701c1abe 3d2bcf05d914d6c38e4a6e3945f24c10 {"aliquot_tag": "ALQ_fd30458", "sample": "S39", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.miRNA-Seq.T.hg38 C3N-01419 LUAD miRNA-Seq tumor CPT0118040006 fd6b897d-37b8-4cde-b0e2-4a082bc42bdd_mirnaseq_gdc_realn.bam 235681434 BAM harmonized CPTAC3 421b41a9-afc9-4018-96c1-7a904e0e516e 915abf5e5094113430103ed4afbe2a45 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.RNA-Seq.chimeric.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.chimeric.gdc_realn.bam 26475754 BAM chimeric harmonized CPTAC3 da9c9e3e-04e5-471f-8781-9d093bf4c1d9 71ef485224de1e9a9d991791c279b56b {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.RNA-Seq.chimeric.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.chimeric.gdc_realn.bam 30853523 BAM chimeric harmonized CPTAC3 3d43c44b-628e-4d56-92d9-67ff2c72c237 00457d93dcc99e4a857fceb7a80f11d5 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.RNA-Seq.genomic.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.genomic.gdc_realn.bam 9584128836 BAM genomic harmonized CPTAC3 945159da-0618-4c71-a179-2be53dcc6acc 8cae1180f8f053691c13e6906650e5a7 {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.RNA-Seq.genomic.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.genomic.gdc_realn.bam 9264924624 BAM genomic harmonized CPTAC3 8ee023cc-f6f6-4160-9225-c273606a7441 084eedc9d3828ca19cd95aca97bba323 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.RNA-Seq.S1_L001_R1.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3566867492 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 23eda113-eb10-478b-81a6-a150dad44e0f 72ac3988ea9d72c23538f019449d675f {"aliquot_tag": "ALQ_fd30458", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.RNA-Seq.S1_L001_R2.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 3951203658 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 a11b9459-305f-4346-ab6b-ff251558b79b 1112bd05d26e0245f36069431d9cf10d {"aliquot_tag": "ALQ_fd30458", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.RNA-Seq.S6_L008_R1.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4004316578 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 22f0219a-0e25-4215-847f-7fb87cf8f00c 866adcbb707f46b784d40ac1fb0a4c17 {"aliquot_tag": "ALQ_ec1a0682", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.RNA-Seq.S6_L008_R2.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4535754942 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 800d2b72-c4e3-42b9-b976-bf3216ff2412 292b1443536221f337e595d6c93d6a98 {"aliquot_tag": "ALQ_ec1a0682", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.RNA-Seq.transcriptome.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.transcriptome.gdc_realn.bam 11510342951 BAM transcriptome harmonized CPTAC3 0c2f77f5-2b7f-494b-a0db-6e02c6c8980e 0d6f83f68167b6d9e7c7497741a16e22 {"aliquot_tag": "ALQ_fd30458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01419.RNA-Seq.transcriptome.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.transcriptome.gdc_realn.bam 14055168263 BAM transcriptome harmonized CPTAC3 66affcc7-5ff0-4e44-9fcd-ab745f13154c 89cf206c4bf5cb5315532e4eec540131 {"aliquot_tag": "ALQ_ec1a0682", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.WGS.N C3N-01419 LUAD WGS blood_normal CPT0119310002 CPT0119310002.WholeGenome.RP-1303.bam 61749472469 BAM submitted_aligned CPTAC3 1f0aa478-aaed-4214-b69c-c791e8765ab1 bef01d5668871992b23f3ee412d5df27 {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01419.WGS.N.hg38 C3N-01419 LUAD WGS blood_normal CPT0119310002 8541ee06-47ca-4632-af45-dcf0ae9e50a2_wgs_gdc_realn.bam 90725050575 BAM harmonized CPTAC3 558c8e7a-0b8e-468a-a47d-c9ecf7f3fed5 9427e1273f17143aa67ced86a7505c9a {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01419.WGS.T C3N-01419 LUAD WGS tumor CPT0118040009 CPT0118040009.WholeGenome.RP-1303.bam 57876996791 BAM submitted_aligned CPTAC3 99832e7c-64cd-401b-92a9-934dd4941ab3 348e6ffcc2f87eb7827d975b6a11771a {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.WGS.T.hg38 C3N-01419 LUAD WGS tumor CPT0118040009 b6f5e659-0d84-4f62-b599-914804ce42fb_wgs_gdc_realn.bam 83725092795 BAM harmonized CPTAC3 7a83537b-30d6-4fdf-91c1-4796e008dbaf ba39972005ccf41e12cd548ea0ad9c1e {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.WXS.N C3N-01419 LUAD WXS blood_normal CPT0119310002 CPT0119310002.WholeExome.RP-1303.bam 16352888808 BAM submitted_aligned CPTAC3 c8952583-d0ce-4cb1-a947-c99c70ec91f2 d22cf5eec473c592dcce2aa8a866233d {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01419.WXS.N.hg38 C3N-01419 LUAD WXS blood_normal CPT0119310002 8541ee06-47ca-4632-af45-dcf0ae9e50a2_wxs_gdc_realn.bam 22949472162 BAM harmonized CPTAC3 7bad8534-983e-4be5-95ac-1b2c6a264267 b7c07b191129f30704a47d9b93003305 {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01419.WXS.T C3N-01419 LUAD WXS tumor CPT0118040009 CPT0118040009.WholeExome.RP-1303.bam 22614668149 BAM submitted_aligned CPTAC3 64662474-47f1-4aeb-8139-517018852172 61acffc16f8911b63f4e802823f55fdc {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01419.WXS.T.hg38 C3N-01419 LUAD WXS tumor CPT0118040009 b6f5e659-0d84-4f62-b599-914804ce42fb_wxs_gdc_realn.bam 31152710196 BAM harmonized CPTAC3 fd2a837e-1888-4a62-b3f6-0c460ddb6660 949aaae458c3eee27659c18dbf3a102d {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.MethArray.Green.A C3N-01488 LUAD Methylation_Array tissue_normal CPT0118180009 203027380028_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 76583378-97ff-4ad6-8e23-2c7c1b325000 82a38fb371bf24781861bb02b62037f3 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.MethArray.Green.T C3N-01488 LUAD Methylation_Array tumor CPT0118160009 202234370119_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4a4e6ee3-5da1-48aa-b06c-38779c1a0192 b360d5b8c605b4b243ebd0003c82ffe2 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.MethArray.Red.A C3N-01488 LUAD Methylation_Array tissue_normal CPT0118180009 203027380028_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 5fab6cee-f771-4ff7-9f1c-bd5a11196343 9729619f6bbf8437eb0a2e5fee424f04 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.MethArray.Red.T C3N-01488 LUAD Methylation_Array tumor CPT0118160009 202234370119_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 d6e152b7-5f0d-4de7-a502-218f7a41861b 2596f79239c09eb5d2bbd9d098036280 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.miRNA-Seq.A.hg38 C3N-01488 LUAD miRNA-Seq tissue_normal CPT0118180006 74c12463-9703-4484-bd4f-e26cbcc53c7d_mirnaseq_gdc_realn.bam 299150060 BAM harmonized CPTAC3 016b20ea-10dc-4d75-b997-6f0e6caac772 4a224c169e75ad3a61a1885b21d20e68 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.miRNA-Seq.S35_L005_R1.A C3N-01488 LUAD miRNA-Seq tissue_normal CPT0118180006 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L005_R1_001.unaln.bam 271006780 BAM S35_L005_R1 submitted_unaligned CPTAC3 4f95bca3-e9e8-4535-bde2-1f19799a6411 05300ab5806d59d95cb56fbe2a4ee187 {"aliquot_tag": "ALQ_e2b63826", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.miRNA-Seq.S6_L004_R1.T C3N-01488 LUAD miRNA-Seq tumor CPT0118160006 181119_UNC31-K00269_0165_AH27WCBBXY_CACCGG_S6_L004_R1_001.unaln.bam 297695056 BAM S6_L004_R1 submitted_unaligned CPTAC3 649729f4-f4f0-494c-9218-1b1f231195a3 6cec4b0f3aabbff8a86e927847818723 {"aliquot_tag": "ALQ_5d868647", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.miRNA-Seq.T.hg38 C3N-01488 LUAD miRNA-Seq tumor CPT0118160006 1009e10d-7d6d-448a-8035-f740a850f697_mirnaseq_gdc_realn.bam 322692858 BAM harmonized CPTAC3 02d12d19-2a97-4b07-9c5b-0cc7226c7efd 37db12be8a81b019d2bd0abcb1e44830 {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.RNA-Seq.chimeric.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.chimeric.gdc_realn.bam 136231259 BAM chimeric harmonized CPTAC3 29ab4188-4252-4bcc-b90a-cae41b07c34c 998a0df3ad9d25a97b99ab877340b1d2 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.RNA-Seq.chimeric.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.chimeric.gdc_realn.bam 159849586 BAM chimeric harmonized CPTAC3 0329d3c6-b422-4a0e-9894-1ccaf2aa5797 5c48f33a2d13ae0092cea0775b572446 {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.RNA-Seq.genomic.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.genomic.gdc_realn.bam 8925367906 BAM genomic harmonized CPTAC3 519905ab-966f-440b-87bd-f1075daa50fa 7bc5a8a4e38496468a7852f17a093674 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.RNA-Seq.genomic.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.genomic.gdc_realn.bam 9944416505 BAM genomic harmonized CPTAC3 4b875c3c-e87d-4610-9877-c870fc2b0649 a78b184214b3e5d392838e23b8e5c864 {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.RNA-Seq.S20_L006_R1.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R1_001.fastq.gz 3923087012 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 d68369b9-dafa-448b-86e3-cc76f75c78da 4dc3b42a9c628465690f0ff8d5a97d28 {"aliquot_tag": "ALQ_e2b63826", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.RNA-Seq.S20_L006_R2.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R2_001.fastq.gz 4494329726 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 446391d3-8bfc-4326-924b-218583233ba8 e2c5d95fb1dc72d1593b568b41cf0d46 {"aliquot_tag": "ALQ_e2b63826", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.RNA-Seq.S6_L002_R1.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 4233657580 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 b9e97367-0fdb-41e2-8917-0a8fcce33380 3b5d2f8ccefa39c2f207cb587ba90aa2 {"aliquot_tag": "ALQ_5d868647", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.RNA-Seq.S6_L002_R2.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 4781371278 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 0547b0d9-70e1-4dfe-a7e6-1f84f7508bfc 9206bbb6415d8ac00f25f8d7df917f6f {"aliquot_tag": "ALQ_5d868647", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.RNA-Seq.transcriptome.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.transcriptome.gdc_realn.bam 10038412636 BAM transcriptome harmonized CPTAC3 e6a87dd0-9229-4496-b100-79be6cde5da7 b3ece28ea9974f4e87aaa5f372dc8421 {"aliquot_tag": "ALQ_e2b63826", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.RNA-Seq.transcriptome.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.transcriptome.gdc_realn.bam 10304122885 BAM transcriptome harmonized CPTAC3 07d7f8ad-3528-4f3d-8ae6-830d0f80c36e 67023966be45f5fad0fdd1fd1cd1046b {"aliquot_tag": "ALQ_5d868647", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.WGS.A C3N-01488 LUAD WGS tissue_normal CPT0118180009 CPT0118180009.WholeGenome.RP-1303.bam 62739560675 BAM submitted_aligned CPTAC3 3e73c9ae-88b9-4888-a5ca-34d82d8b5baf bf722681ed9fddc6c7404a258ade6664 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.WGS.A.hg38 C3N-01488 LUAD WGS tissue_normal CPT0118180009 148d9024-68ee-4502-aef0-f8debe1caf14_wgs_gdc_realn.bam 91346927584 BAM harmonized CPTAC3 0b77ff46-2fe1-4055-b0fd-fe3d9dd124a1 b2d69f21ae6d6247d87f59d9fb6c23ef {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.WGS.N C3N-01488 LUAD WGS blood_normal CPT0119390002 CPT0119390002.WholeGenome.RP-1303.bam 70540645458 BAM submitted_aligned CPTAC3 4e22c59a-964f-4614-afc9-61138839045e 66ffdf1de17f635020d77ec34ea96d3e {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01488.WGS.N.hg38 C3N-01488 LUAD WGS blood_normal CPT0119390002 8d3645e3-7f42-4816-8bb0-7cdcd9612242_wgs_gdc_realn.bam 103681430429 BAM harmonized CPTAC3 87bce221-0796-41d0-bc03-2a03a762dd4a 72dd3b6d62886ca9627a22a23c2b8ec1 {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01488.WGS.T C3N-01488 LUAD WGS tumor CPT0118160009 CPT0118160009.WholeGenome.RP-1303.bam 64915236701 BAM submitted_aligned CPTAC3 a8d8d997-5f93-4cd9-8628-13b42e333af3 7bfaa49c39f32746ed4a257c9664a2e6 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.WGS.T.hg38 C3N-01488 LUAD WGS tumor CPT0118160009 04be411c-0dbb-46fc-a856-6657032723ab_wgs_gdc_realn.bam 95125244771 BAM harmonized CPTAC3 96a7e151-42f5-4f57-8d45-50c13e43468f 4f20a0b35b015c0c57d3c345647808b8 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.WXS.A C3N-01488 LUAD WXS tissue_normal CPT0118180009 CPT0118180009.WholeExome.RP-1303.bam 37949661867 BAM submitted_aligned CPTAC3 7c356cf5-e5d2-46d5-96fb-71ac3059fe37 6f4e14dcbe519a228754eeb75f17ad07 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.WXS.A.hg38 C3N-01488 LUAD WXS tissue_normal CPT0118180009 148d9024-68ee-4502-aef0-f8debe1caf14_wxs_gdc_realn.bam 50431601513 BAM harmonized CPTAC3 a4aecdb9-8acd-400e-8f80-779a7e5ef030 115292647576a6ba87587421b16862bf {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01488.WXS.N C3N-01488 LUAD WXS blood_normal CPT0119390002 CPT0119390002.WholeExome.RP-1303.bam 45221758744 BAM submitted_aligned CPTAC3 34b75e02-09e1-496b-80b8-1ff1d99fbf2b d552222467cff6b3f5d5b918cf6003c9 {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01488.WXS.N.hg38 C3N-01488 LUAD WXS blood_normal CPT0119390002 8d3645e3-7f42-4816-8bb0-7cdcd9612242_wxs_gdc_realn.bam 61160136987 BAM harmonized CPTAC3 74c4ed65-5d3c-47d2-acde-3de56c7cd361 22ffa9bb924ee3c1b3e20154838fb197 {"aliquot_tag": "ALQ_33047f30", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01488.WXS.T C3N-01488 LUAD WXS tumor CPT0118160009 CPT0118160009.WholeExome.RP-1303.bam 33203002922 BAM submitted_aligned CPTAC3 7f9ffc59-18ff-4042-90fc-5d00866f1d24 678a92bb580e0dffc705316a15774693 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01488.WXS.T.hg38 C3N-01488 LUAD WXS tumor CPT0118160009 04be411c-0dbb-46fc-a856-6657032723ab_wxs_gdc_realn.bam 44846579599 BAM harmonized CPTAC3 7e8c2099-ed79-4b7c-aa3d-f29c798b5296 816dd211bcb7d8675a30ed64ca445e4f {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.MethArray.Green.A C3N-01489 LUAD Methylation_Array tissue_normal CPT0105980009 203027390049_R03C01_Grn.idat 13676229 IDAT Green NA CPTAC3 01326e6a-0f8e-41b0-b76c-406f5498a2c0 4fff9edf7a74edd1aafdd1b6de35425e {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.MethArray.Green.T C3N-01489 LUAD Methylation_Array tumor CPT0105940009 202234380069_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b4134bd9-5efe-4fef-b2a7-7620ac728aab 5238bf6cf75e884c8df4b150f10bcc18 {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.MethArray.Red.A C3N-01489 LUAD Methylation_Array tissue_normal CPT0105980009 203027390049_R03C01_Red.idat 13676229 IDAT Red NA CPTAC3 6fd8221a-b7f3-4863-b63d-c4f9bdb623a1 130a3029904c29896b63ccd44efedbfa {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.MethArray.Red.T C3N-01489 LUAD Methylation_Array tumor CPT0105940009 202234380069_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 98bc2367-6d4b-4c25-bbed-d19f6c9b273e 665fd17c720310ee85aa2039940618ca {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.miRNA-Seq.A.hg38 C3N-01489 LUAD miRNA-Seq tissue_normal CPT0105980006 2305cf9b-f8fd-488c-bf2f-e2637aa6cc52_mirnaseq_gdc_realn.bam 264074790 BAM harmonized CPTAC3 52ff9226-8246-499b-b9ee-227e898bac6c fb96d47c40dde29ef192e16d1b226ef4 {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.miRNA-Seq.S32_L005_R1.A C3N-01489 LUAD miRNA-Seq tissue_normal CPT0105980006 181108_UNC31-K00269_0162_AH255GBBXY_ACTTGA_S32_L005_R1_001.unaln.bam 237401103 BAM S32_L005_R1 submitted_unaligned CPTAC3 384830c1-e828-49ea-b76a-57573622a63b cb855ae7af7d001d5cdf575ba2f8a5fa {"aliquot_tag": "ALQ_a398db15", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.miRNA-Seq.S35_L002_R1.T C3N-01489 LUAD miRNA-Seq tumor CPT0105940006 181113_UNC31-K00269_0164_AH23NNBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 207381251 BAM S35_L002_R1 submitted_unaligned CPTAC3 f5e363ac-68ff-4b09-a2db-fadc297003d5 97e800872f334bd0125e3c022dd51112 {"aliquot_tag": "ALQ_66683614", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.miRNA-Seq.T.hg38 C3N-01489 LUAD miRNA-Seq tumor CPT0105940006 6d516955-0fe2-4f55-97e8-f907007aa30c_mirnaseq_gdc_realn.bam 223053864 BAM harmonized CPTAC3 d22958da-5c18-46c8-80b4-4b450fc504de c7c911ccebbf878d88d02c2f10a8828d {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.RNA-Seq.chimeric.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.chimeric.gdc_realn.bam 106812053 BAM chimeric harmonized CPTAC3 12c2c061-c04d-41bf-a9e6-ebf66a8077b3 b430685a50d50ec252a273b783fc81a3 {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.RNA-Seq.chimeric.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.chimeric.gdc_realn.bam 99597541 BAM chimeric harmonized CPTAC3 7461f4c4-8639-4816-869e-0b00e00bf23c 04c07e8a07eac5672813ab4c249ae370 {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.RNA-Seq.genomic.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.genomic.gdc_realn.bam 8467021079 BAM genomic harmonized CPTAC3 bf010ff5-6787-46fa-9885-a140be5eb8ac b54a0cf5cde565bb1f8ad8242d01cb05 {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.RNA-Seq.genomic.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.genomic.gdc_realn.bam 9842058607 BAM genomic harmonized CPTAC3 e288582f-3a96-4c2f-8b25-1818c39d8e96 28887a13797a2b8496b4a7560acb9030 {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.RNA-Seq.S1_L007_R1.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R1_001.fastq.gz 3710045856 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 d568a0a1-fc3c-4523-9b73-a8f5d096a49b 4178b6c778c48555d670b0cd1fb90029 {"aliquot_tag": "ALQ_66683614", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.RNA-Seq.S1_L007_R2.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R2_001.fastq.gz 4288829996 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 27e3faae-2c1c-418b-87ed-d5f4edfe4384 527a84aa2633450116dd76c74cc6fca6 {"aliquot_tag": "ALQ_66683614", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.RNA-Seq.S2_L007_R1.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R1_001.fastq.gz 3950047611 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 5a005f8b-888a-457a-adbf-60aa21276621 42d9406da3be37c5dbe358ba3f39090a {"aliquot_tag": "ALQ_a398db15", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.RNA-Seq.S2_L007_R2.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R2_001.fastq.gz 4342548898 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 48895b66-ca1f-4f49-905c-4ffcaa748766 4706371812d5b1d82f1c2c7bb1f4b351 {"aliquot_tag": "ALQ_a398db15", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.RNA-Seq.transcriptome.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.transcriptome.gdc_realn.bam 10013477633 BAM transcriptome harmonized CPTAC3 f3718ead-6aa7-436b-9f20-f1cbecbe0fc0 b27e937201bdeb274ae23b68b6d8cbbd {"aliquot_tag": "ALQ_a398db15", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.RNA-Seq.transcriptome.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.transcriptome.gdc_realn.bam 9834031061 BAM transcriptome harmonized CPTAC3 b52c3bb8-4b73-4c04-b6be-28a4d48546e6 411304ca0a14e19c7ffd6bb38467a885 {"aliquot_tag": "ALQ_66683614", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.WGS.A C3N-01489 LUAD WGS tissue_normal CPT0105980009 CPT0105980009.WholeGenome.RP-1303.bam 68757317421 BAM submitted_aligned CPTAC3 1704dcf4-482a-498d-8d49-b90c3f798a61 4112f14493d565a5d9f47429cc7449ce {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.WGS.A.hg38 C3N-01489 LUAD WGS tissue_normal CPT0105980009 9803ad5a-3b06-433f-95eb-f64b5e54717a_wgs_gdc_realn.bam 99731976043 BAM harmonized CPTAC3 7779cf3a-d11d-4d99-b8a1-b7fd1d66cb38 1111e9a1cb6ce16765764539ceed2624 {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.WGS.N C3N-01489 LUAD WGS blood_normal CPT0108270002 CPT0108270002.WholeGenome.RP-1303.bam 61441261448 BAM submitted_aligned CPTAC3 6399878c-aa83-4697-9d57-a801eed3a410 b94f8052df93c2e33eeb19b6a5276bdf {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01489.WGS.N.hg38 C3N-01489 LUAD WGS blood_normal CPT0108270002 109c49c2-5da7-479e-ae3e-2faf07ae9244_wgs_gdc_realn.bam 90711217036 BAM harmonized CPTAC3 3be59a0e-af84-46ed-93cc-bcbf78120232 0007ddd8c88bea98e5b792b09b3b4564 {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01489.WGS.T C3N-01489 LUAD WGS tumor CPT0105940009 CPT0105940009.WholeGenome.RP-1303.bam 60019924422 BAM submitted_aligned CPTAC3 b46cbecb-69be-4862-8b2a-bf74e5d6069b a3ebf430a325702d49967b0d6746128f {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.WGS.T.hg38 C3N-01489 LUAD WGS tumor CPT0105940009 430ae4b9-2dbc-4a3c-a397-2baf354b13a5_wgs_gdc_realn.bam 87727255836 BAM harmonized CPTAC3 3a51b60c-f3a8-42c5-95ac-3157c2b05073 4314c35503adf3a830d78542cfef3e20 {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.WXS.A C3N-01489 LUAD WXS tissue_normal CPT0105980009 CPT0105980009.WholeExome.RP-1303.bam 45567868944 BAM submitted_aligned CPTAC3 76b3591d-638f-4182-b1db-a224e7bbb3f5 a61ea8400ef433d66a526d584b0a5268 {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.WXS.A.hg38 C3N-01489 LUAD WXS tissue_normal CPT0105980009 9803ad5a-3b06-433f-95eb-f64b5e54717a_wxs_gdc_realn.bam 61577224753 BAM harmonized CPTAC3 ac712c08-c794-4736-ad32-63782443293d d5966135cf68fd3eabe0df98fbdb44e0 {"aliquot_tag": "ALQ_3327c684", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01489.WXS.N C3N-01489 LUAD WXS blood_normal CPT0108270002 CPT0108270002.WholeExome.RP-1303.bam 38594500127 BAM submitted_aligned CPTAC3 1e3eda3f-da5a-45c6-b3bb-c67b57f0104e 59ebfce38c3a3e8d8eae6d40b59100fd {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01489.WXS.N.hg38 C3N-01489 LUAD WXS blood_normal CPT0108270002 109c49c2-5da7-479e-ae3e-2faf07ae9244_wxs_gdc_realn.bam 52853972717 BAM harmonized CPTAC3 c5a6d394-659c-43cf-8b4f-e7d637d4430e 8c92834850224b4191d13c739688a5ed {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01489.WXS.T C3N-01489 LUAD WXS tumor CPT0105940009 CPT0105940009.WholeExome.RP-1303.bam 26982320409 BAM submitted_aligned CPTAC3 f57b6c5a-2e3c-410f-b0ed-db06b57bb59c 23e643c40a6e93f0a5dab549e5dd04e0 {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01489.WXS.T.hg38 C3N-01489 LUAD WXS tumor CPT0105940009 430ae4b9-2dbc-4a3c-a397-2baf354b13a5_wxs_gdc_realn.bam 37205601233 BAM harmonized CPTAC3 78b86af9-8dec-45da-b00f-211f7ac8c5e2 7f6b6c008769818e6945592314369eca {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.ADD_17a18cea.MethArray.Green.T C3N-01502 PDA Methylation_Array tumor CPT0065570009 202184990052_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 679f1d0f-c921-4325-b404-260a475ccc44 cf7581ce6f668c7e900511a5c235e58e {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.ADD_17a18cea.MethArray.Red.T C3N-01502 PDA Methylation_Array tumor CPT0065570009 202184990052_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8a8e12dc-7e97-4f17-9755-17c6fe9285b0 df448cb5b05c10f815e3f7a2bdc6e4ea {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.ADD_17a18cea.WGS.T C3N-01502 PDA WGS tumor CPT0065570009 CPT0065570009.WholeGenome.RP-1303.bam 69797664919 BAM submitted_aligned CPTAC3 73ae0bb6-13ae-496e-ab52-32bda494159f f72616c12ebbdd44350fbc382166e72b {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.ADD_17a18cea.WGS.T.hg38 C3N-01502 PDA WGS tumor CPT0065570009 8c9b3147-4bf6-42f3-838e-b257eaa4b898_gdc_realn.bam 105875055640 BAM harmonized CPTAC3 18992ff2-d652-4450-a037-d477d50b7245 fe1a74f591597373c298bec74944d515 {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.ADD_17a18cea.WXS.T C3N-01502 PDA WXS tumor CPT0065570009 CPT0065570009.WholeExome.RP-1303.bam 28394673755 BAM submitted_aligned CPTAC3 c76e8040-7565-4a8e-b160-b7efdf6d0daf 00d47d551c510efeca42923d3b0dcedb {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.ADD_17a18cea.WXS.T.hg38 C3N-01502 PDA WXS tumor CPT0065570009 8c9b3147-4bf6-42f3-838e-b257eaa4b898_gdc_realn.bam 39091179857 BAM harmonized CPTAC3 a87b3f34-3f83-4d33-9f2d-91a38f585471 c5641321d01bf84c3a4b706ad932ad93 {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.miRNA-Seq.S12_L001_R1.T C3N-01502 PDA miRNA-Seq tumor CPT0065570006 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L001_R1_001.unaln.bam 224703888 BAM S12_L001_R1 submitted_unaligned CPTAC3 3bb977cf-f8b0-4be3-8233-c7774353fe60 dc69d96706a1a44780fd220d710b00ab {"aliquot_tag": "ALQ_871e917b", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.miRNA-Seq.T.hg38 C3N-01502 PDA miRNA-Seq tumor CPT0065570006 a466c026-74d9-46b7-8163-46fabab9b1f9_mirnaseq_gdc_realn.bam 247185270 BAM harmonized CPTAC3 3085592d-cd8d-405e-81ef-b321df20e6eb 0e0ed0a4f10629229753eb6ec08c563e {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.RNA-Seq.chimeric.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.chimeric.gdc_realn.bam 25542244 BAM chimeric harmonized CPTAC3 29627747-eed3-4fd7-bfd1-01ca64e7994b 8c7de779f9900b8268ea31e7a10e7103 {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.RNA-Seq.genomic.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.genomic.gdc_realn.bam 9849420953 BAM genomic harmonized CPTAC3 b963d3ea-37c6-495f-9420-629a9aba1fb0 72e375cf6800fb570b6c16945ebb8bba {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.RNA-Seq.S4_L001_R1.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R1_001.fastq.gz 3950291517 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 1160e253-5400-4f77-8e84-f6dfe6176fad d1dbe2f221a28d85af4d144eb716070b {"aliquot_tag": "ALQ_871e917b", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.RNA-Seq.S4_L001_R2.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R2_001.fastq.gz 4075095135 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 0e8256ed-01e1-4440-88c0-68a96bb0e4a4 4fadbfe5aad6ab4221e86dfaf2768f51 {"aliquot_tag": "ALQ_871e917b", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.RNA-Seq.transcriptome.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.transcriptome.gdc_realn.bam 9841173061 BAM transcriptome harmonized CPTAC3 f8c981dd-8b5d-48d8-b76d-5b81d9e1261d 5bf5173bd9f7b467a5fafa1d6ec7dfc3 {"aliquot_tag": "ALQ_871e917b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.WGS.N C3N-01502 PDA WGS blood_normal CPT0070700002 CPT0070700002.WholeGenome.RP-1303.bam 88534643472 BAM submitted_aligned CPTAC3 eec33d57-ffdc-4f56-9aa4-ce8276b7e49d 719b7b9b87a7fc4fc7c7271a71c8fb57 {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01502.WGS.N.hg38 C3N-01502 PDA WGS blood_normal CPT0070700002 90fad112-7ec0-43d1-9293-731150d95deb_gdc_realn.bam 132609636824 BAM harmonized CPTAC3 073dcaea-3c85-4618-b6a5-30fc9397ff6a 0726c5a5f38c354ef3ab4c40250925c7 {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01502.WXS.N C3N-01502 PDA WXS blood_normal CPT0070700002 CPT0070700002.WholeExome.RP-1303.bam 35569421100 BAM submitted_aligned CPTAC3 f12f1746-e8eb-4011-a0d8-160c7096cb99 99675bd94864513c8957757652c9d2c5 {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01502.WXS.N.hg38 C3N-01502 PDA WXS blood_normal CPT0070700002 90fad112-7ec0-43d1-9293-731150d95deb_gdc_realn.bam 48693181748 BAM harmonized CPTAC3 dff9e346-18f3-43bb-9bc8-99f155d3e347 5dd0dddc4846edb63204f36c7600597b {"aliquot_tag": "ALQ_e1090740", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01502.WXS.T C3N-01502 PDA WXS tumor CPT0065570009_1 CPT0065570009_1.WholeExome.RP-1303.bam 56101879612 BAM submitted_aligned CPTAC3 96936d47-f852-4953-939c-9c565b6cff17 287bf9db2d3c1902caf58f045ddec45c {"aliquot_tag": "ALQ_6dbb9092", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01502.WXS.T.hg38 C3N-01502 PDA WXS tumor CPT0065570009_1 48f1b9b8-4725-4465-af3d-a86822eac545_wxs_gdc_realn.bam 77001496586 BAM harmonized CPTAC3 224879d2-8105-4028-a90e-615fab8c240c dfc4fa3524d61c8d52e65fdc8bb22980 {"aliquot_tag": "ALQ_6dbb9092", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.MethArray.Green.T C3N-01505 GBM Methylation_Array tumor CPT0089150009 202234360009_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9bbe8147-627f-4482-8958-ce67c5278244 7a07e7b54652a7c502d49b24ff613bb3 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.MethArray.Red.T C3N-01505 GBM Methylation_Array tumor CPT0089150009 202234360009_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6e105bc1-e17d-4338-8880-bb0712b5c3aa 95104930666a742f21c67a93696e2a5f {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.miRNA-Seq.S3_L007_R1.T C3N-01505 GBM miRNA-Seq tumor CPT0089150006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATTCCT_S3_L007_R1_001.unaln.bam 202941163 BAM S3_L007_R1 submitted_unaligned CPTAC3 01ac63d2-73e4-4a02-80cf-2c9b24969b03 d6ae1c47a0c0237e8cf5566852da9a39 {"aliquot_tag": "ALQ_b465f84b", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.miRNA-Seq.T.hg38 C3N-01505 GBM miRNA-Seq tumor CPT0089150006 1bb7c639-e130-42b3-a721-8ac016f7e5ff_mirnaseq_gdc_realn.bam 227043971 BAM harmonized CPTAC3 0ef843df-001f-4f98-8696-2c939da64e5f 7314c3eed77ddaf01a9bb194a76141ef {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.RNA-Seq.chimeric.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.chimeric.gdc_realn.bam 43930093 BAM chimeric harmonized CPTAC3 e382185f-f57d-4ef2-9342-614468ee0a4c d60c0884bd25486ec881a8012a62b290 {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.RNA-Seq.genomic.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.genomic.gdc_realn.bam 9301401147 BAM genomic harmonized CPTAC3 c92e8dd5-e49c-49de-96cf-e1f2c7a3d7a2 c5d8c60e5401be0cd975248a7f53f081 {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.RNA-Seq.S8_L007_R1.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R1_001.fastq.gz 4394536669 FASTQ S8_L007_R1 submitted_unaligned CPTAC3 ae912b64-4bdb-4a13-8b73-87bb12c0b91d ab089db04ace302e735640050952ce3e {"aliquot_tag": "ALQ_b465f84b", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.RNA-Seq.S8_L007_R2.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R2_001.fastq.gz 4755808924 FASTQ S8_L007_R2 submitted_unaligned CPTAC3 e6967824-e7b5-4e93-b0d9-d83a178cb330 e9f33dfd2766846203e253420985c5ed {"aliquot_tag": "ALQ_b465f84b", "sample": "S8", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.RNA-Seq.transcriptome.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.transcriptome.gdc_realn.bam 11263981848 BAM transcriptome harmonized CPTAC3 86228e13-3955-4851-891c-0c688d41c51b 481e8f849825f41a2727adcb0985982a {"aliquot_tag": "ALQ_b465f84b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.WGS.N C3N-01505 GBM WGS blood_normal CPT0091300002 CPT0091300002.WholeGenome.RP-1303.bam 70461521289 BAM submitted_aligned CPTAC3 2ef1a4d2-22e3-439a-ac88-8d8d98417c92 b4a700ebad78478478effa925eb6f6df {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01505.WGS.N.hg38 C3N-01505 GBM WGS blood_normal CPT0091300002 087bdb48-d63e-46d0-96d1-1915276d5fb6_wgs_gdc_realn.bam 103578718945 BAM harmonized CPTAC3 4c49660d-60b1-40a4-9669-3aabc6c5ced2 a7e4e4a18f9aa6a2809d5e19466814ab {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01505.WGS.T C3N-01505 GBM WGS tumor CPT0089150009 CPT0089150009.WholeGenome.RP-1303.bam 76929538614 BAM submitted_aligned CPTAC3 3fecf492-3f49-4863-82c4-fe0e1f3e99ac 628f9efff135e97a5a551a0819b695d4 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.WGS.T.hg38 C3N-01505 GBM WGS tumor CPT0089150009 c51f48fb-4a71-430b-8492-cecd49c158d4_wgs_gdc_realn.bam 112049041549 BAM harmonized CPTAC3 46030a49-3f35-442f-865c-2d7f298344ee 246440d0060c84244eea047d393b5996 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.WXS.N C3N-01505 GBM WXS blood_normal CPT0091300002 CPT0091300002.WholeExome.RP-1303.bam 33488019775 BAM submitted_aligned CPTAC3 5074c7bc-8589-444f-b3dd-62836a7be360 ec29c9ae85f00049a4ce24cec841e180 {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01505.WXS.N.hg38 C3N-01505 GBM WXS blood_normal CPT0091300002 087bdb48-d63e-46d0-96d1-1915276d5fb6_wxs_gdc_realn.bam 45971361686 BAM harmonized CPTAC3 202860b1-7166-46a7-a18c-32b907a8fc39 74a5eee39907f858bb45a252d64e8586 {"aliquot_tag": "ALQ_c9655cd0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01505.WXS.T C3N-01505 GBM WXS tumor CPT0089150009 CPT0089150009.WholeExome.RP-1303.bam 43202073680 BAM submitted_aligned CPTAC3 bc3e327f-d888-441f-a8b4-c12ae3259554 8d3dd2c623b4a55893dc87a1b3e09f0d {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01505.WXS.T.hg38 C3N-01505 GBM WXS tumor CPT0089150009 c51f48fb-4a71-430b-8492-cecd49c158d4_wxs_gdc_realn.bam 59752261992 BAM harmonized CPTAC3 b994ca41-5e1c-4bc1-9b92-bc93f3fc1483 00c6f7be6d8ec596ec7ed1091f1ce3f0 {"aliquot_tag": "ALQ_24dae5da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.MethArray.Green.T C3N-01510 UCEC Methylation_Array tumor CPT0079650009 202178770006_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4af3e3ce-431a-4fc6-b669-651aa6aa3f31 fcd3a75d8d0a2c86b2a82ade9c4a3b82 {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.MethArray.Red.T C3N-01510 UCEC Methylation_Array tumor CPT0079650009 202178770006_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e0efd557-7854-4b60-a51d-f13bce101333 5bc04861ce61b15b2c86f661250cff4c {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.miRNA-Seq.S12_L001_R1.T C3N-01510 UCEC miRNA-Seq tumor CPT0079650006 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L001_R1_001.unaln.bam 173577245 BAM S12_L001_R1 submitted_unaligned CPTAC3 f6b7de9b-f86c-4741-a0ac-9a382df59c0a 4c862c2e18efebda97e1b7c7658e3aed {"aliquot_tag": "ALQ_7040da5f", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.miRNA-Seq.T.hg38 C3N-01510 UCEC miRNA-Seq tumor CPT0079650006 b993c95c-2d97-4c3f-a7ee-4a655883192f_mirnaseq_gdc_realn.bam 189496117 BAM harmonized CPTAC3 56c3bcd0-a695-4d1c-a761-90353e1c8490 899fceb5666cd87bcf58ca05b15ec994 {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.chimeric.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.chimeric.gdc_realn.bam 44616872 BAM chimeric harmonized CPTAC3 bf78d448-b106-4727-8fac-2d769b7bbf65 524f25d56788e2154874fd152bc9508c {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.chimeric.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.chimeric.gdc_realn.bam 59416409 BAM chimeric harmonized CPTAC3 f8d32784-24fd-423e-9ace-34fe0491a1dd 115d4ae4d80646a52b4dcbf341f37818 {"aliquot_tag": "ALQ_ed981329", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.genomic.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.genomic.gdc_realn.bam 8262375143 BAM genomic harmonized CPTAC3 8bce61e9-3174-491d-b3d5-eba824b1f196 75aa627c103f5f0513107a88db9ef703 {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.genomic.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.genomic.gdc_realn.bam 6800448704 BAM genomic harmonized CPTAC3 7a248e09-4ce3-4615-bf20-97e09ac52005 25fc9ec1b56e736e9fd3a5d71ef0f7df {"aliquot_tag": "ALQ_ed981329", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.S15_L004_R1.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3423529925 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 9c598e26-c32b-4405-af2a-c560941fb81a c811a1f64c9a773f06ee5ada28af7217 {"aliquot_tag": "ALQ_7040da5f", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.S15_L004_R2.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 3668937274 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 086afb47-3e44-4075-900f-c9efeb622959 2e5a64ce52b394eb69ba08e9f4ba885e {"aliquot_tag": "ALQ_7040da5f", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.S4_R1.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R1_001.fastq.gz 3792530392 FASTQ S4_R1 submitted_unaligned CPTAC3 e197a317-1251-4521-ad3e-f646cb1983c7 1f2d901515e77fd7b10a88faab5acfb0 {"aliquot_tag": "ALQ_ed981329", "sample": "S4", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.S4_R2.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R2_001.fastq.gz 3878269734 FASTQ S4_R2 submitted_unaligned CPTAC3 ec386050-d52d-40b8-9693-29616b999bd9 18bd60355f70537aabe783ef29f10aba {"aliquot_tag": "ALQ_ed981329", "sample": "S4", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.transcriptome.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.transcriptome.gdc_realn.bam 7734263571 BAM transcriptome harmonized CPTAC3 2e40c6e6-4733-46d1-8417-59aef23dde65 cf77a60870109ffc983f0abf9d5577c3 {"aliquot_tag": "ALQ_7040da5f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.RNA-Seq.transcriptome.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.transcriptome.gdc_realn.bam 4112821703 BAM transcriptome harmonized CPTAC3 9866e2e7-5d65-43c2-8cbe-416f33d7712b ad754bda54ed198e49d5e399215d3062 {"aliquot_tag": "ALQ_ed981329", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.WGS.N C3N-01510 UCEC WGS blood_normal CPT0080750002 CPT0080750002.WholeGenome.RP-1303.bam 61495740779 BAM submitted_aligned CPTAC3 9f2d98f1-6a52-449d-a43d-ef8945c07061 993e256019032b691a0b8ceb40c4d86d {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01510.WGS.N.hg38 C3N-01510 UCEC WGS blood_normal CPT0080750002 f8e5df28-e72a-43d1-867f-2774935b9d1b_gdc_realn.bam 91153684077 BAM harmonized CPTAC3 5ef81d6b-2d4a-4ed8-960b-eea9cf8c3598 c4c252b334e351b5b427fb356168d591 {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01510.WGS.T C3N-01510 UCEC WGS tumor CPT0079650009 CPT0079650009.WholeGenome.RP-1303.bam 61691453549 BAM submitted_aligned CPTAC3 64dde8cc-48e5-47b7-b9e8-e98451894320 b306037917e255e761c1c971dbe7ce2a {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.WGS.T.hg38 C3N-01510 UCEC WGS tumor CPT0079650009 6071b625-57fb-4113-9926-83e265a78d28_gdc_realn.bam 92530012976 BAM harmonized CPTAC3 f8c5708f-f692-4381-92ea-4dcf5a970d14 f0aa49de2b4ad096cb335421e051205d {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.WXS.N C3N-01510 UCEC WXS blood_normal CPT0080750002 CPT0080750002.WholeExome.RP-1303.bam 22326770414 BAM submitted_aligned CPTAC3 aa51f274-accb-4897-b533-cfd29ab5bd6a d6242bf63304d1f7fbb2271645f6b1b1 {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01510.WXS.N.hg38 C3N-01510 UCEC WXS blood_normal CPT0080750002 f8e5df28-e72a-43d1-867f-2774935b9d1b_gdc_realn.bam 30201932716 BAM harmonized CPTAC3 1b6a1313-bd3c-44c1-a4e6-379bee72ac96 f004cd8af6b102e5f5d56f8d960a2c68 {"aliquot_tag": "ALQ_f0c99a9c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01510.WXS.T C3N-01510 UCEC WXS tumor CPT0079650009 CPT0079650009.WholeExome.RP-1303.bam 33561340299 BAM submitted_aligned CPTAC3 7ac90e00-bd10-44e5-91f1-4e51b1764945 cce924e1cd8991c39b35901195e15d54 {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01510.WXS.T.hg38 C3N-01510 UCEC WXS tumor CPT0079650009 6071b625-57fb-4113-9926-83e265a78d28_gdc_realn.bam 46589333775 BAM harmonized CPTAC3 b9b9dea4-2021-4f06-8697-048fa9d1baa0 d16b2678b03045ef3df58fec223dcc1d {"aliquot_tag": "ALQ_e0ffc7ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.ADD_7f896f3c.WGS.N C3N-01515 GBM WGS blood_normal CPT0080730002 CPT0080730002.WholeGenome.RP-1303.bam 52207974955 BAM submitted_aligned CPTAC3 4755647c-2207-4dca-9a9c-6fe483da66c5 62cf6e91c8c5920e3fedb1104ffd56ea {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01515.ADD_7f896f3c.WGS.N.hg38 C3N-01515 GBM WGS blood_normal CPT0080730002 474dfea4-f2db-44d5-9f00-98c85f07f20b_wgs_gdc_realn.bam 75868489857 BAM harmonized CPTAC3 f97f390b-0bb3-499c-b6bd-00b1afce849b 570f1f7691da38e20a6e166724b2d2ae {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01515.ADD_7f896f3c.WXS.N C3N-01515 GBM WXS blood_normal CPT0080730002 CPT0080730002.WholeExome.RP-1303.bam 30433178668 BAM submitted_aligned CPTAC3 3f2264d8-4724-47d2-8dce-5ffbfeacbc29 37e514e5469bb2d156dc320816fb2ee3 {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01515.ADD_7f896f3c.WXS.N.hg38 C3N-01515 GBM WXS blood_normal CPT0080730002 474dfea4-f2db-44d5-9f00-98c85f07f20b_wxs_gdc_realn.bam 40059433644 BAM harmonized CPTAC3 2150f839-57f4-4e89-b9b1-f4b36d3c2fc0 da921f20407a7a848f6430d97d1f8d77 {"aliquot_tag": "ADD_7f896f3c", "aliquot_annotation": "Duplicate item: Additional DNA requested ", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01515.MethArray.Green.T C3N-01515 GBM Methylation_Array tumor CPT0079790009 202234360009_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c7524b69-b3c0-4cf9-b7e1-f65042c77554 20320b58cfb9b5eb2abc6f33055bb2fa {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.MethArray.Red.T C3N-01515 GBM Methylation_Array tumor CPT0079790009 202234360009_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 137f47b7-be39-4f9a-9411-ad2cfff66d10 d6ab07ebab680a040a8b62b51529a0a4 {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.miRNA-Seq.S27_L008_R1.T C3N-01515 GBM miRNA-Seq tumor CPT0079790006 180724_UNC32-K00270_0106_BHWK3MBBXX_TTAGGC_S27_L008_R1_001.unaln.bam 175886263 BAM S27_L008_R1 submitted_unaligned CPTAC3 a9ce2cb9-4db9-4ef2-ac0f-b6cc7a5cbc64 34a56f4f8b39596a0b2d43562592bdca {"aliquot_tag": "ALQ_7eece4fb", "sample": "S27", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.miRNA-Seq.T.hg38 C3N-01515 GBM miRNA-Seq tumor CPT0079790006 66ac1084-4e2c-4376-a020-03eb4ac0035c_mirnaseq_gdc_realn.bam 194398504 BAM harmonized CPTAC3 4ff624d5-d77a-4378-ac8b-df65a8a4d732 978b573470779029d23e995f79dde381 {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.RNA-Seq.chimeric.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.chimeric.gdc_realn.bam 44487877 BAM chimeric harmonized CPTAC3 b60d0ba2-0ae6-4726-81df-e851f58b4bd5 8fc6d9c74536c4e69a8f4bcf0f606aaa {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.RNA-Seq.genomic.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.genomic.gdc_realn.bam 8690514560 BAM genomic harmonized CPTAC3 715ffbe5-efd3-4f62-9fb8-d4a13367ae40 10646a4e5ef3822f7bbda209ca07baf4 {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.RNA-Seq.S16_L005_R1.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R1_001.fastq.gz 3931183389 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 4af57b23-c496-487d-868a-0c09c5e20ea4 05c5f57ec6e77ddd76aa065e78644ded {"aliquot_tag": "ALQ_7eece4fb", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.RNA-Seq.S16_L005_R2.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R2_001.fastq.gz 4328111545 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 da0a144a-f03c-46e9-b35c-14b0b1a9a40c caa2d2caddf4c1c504fd1d33fe897c44 {"aliquot_tag": "ALQ_7eece4fb", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.RNA-Seq.transcriptome.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.transcriptome.gdc_realn.bam 10389811823 BAM transcriptome harmonized CPTAC3 82496b41-175d-4743-91e7-3065130f47ef 2a355f81e4d93840095875f67f07da0e {"aliquot_tag": "ALQ_7eece4fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.WGS.T C3N-01515 GBM WGS tumor CPT0079790009 CPT0079790009.WholeGenome.RP-1303.bam 63947622118 BAM submitted_aligned CPTAC3 26a06e1a-93b6-4f62-b833-c306df9a077c 7cc5fc877f9269f59fa0bbbbb0a73214 {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.WGS.T.hg38 C3N-01515 GBM WGS tumor CPT0079790009 d4205a17-5d31-4f86-9a43-4631df1263ab_wgs_gdc_realn.bam 94688322512 BAM harmonized CPTAC3 0a677c0b-d4b6-48c3-8cb1-f0450487c8e1 4c90eb6f9f960eed16b323e275fe1740 {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.WXS.T C3N-01515 GBM WXS tumor CPT0079790009 CPT0079790009.WholeExome.RP-1303.bam 37935476804 BAM submitted_aligned CPTAC3 6711ebe4-8aee-4b9a-9343-8b808ef2f55d b6d586f872d217c8ad45422c1326927a {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01515.WXS.T.hg38 C3N-01515 GBM WXS tumor CPT0079790009 d4205a17-5d31-4f86-9a43-4631df1263ab_wxs_gdc_realn.bam 51761332459 BAM harmonized CPTAC3 74431fbe-41f7-4514-9329-88da5c09fdd1 b75e51a3df40e9f64aa2456ae9327d0a {"aliquot_tag": "ALQ_ee53f96a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.MethArray.Green.T C3N-01517 GBM Methylation_Array tumor CPT0167530006 203028200048_R07C01_Grn.idat 13676229 IDAT Green NA CPTAC3 ee436dcb-2bd8-4739-9406-a7d2bee4b7ef 4446dd74d586776bcaa254f81326e76e {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.MethArray.Red.T C3N-01517 GBM Methylation_Array tumor CPT0167530006 203028200048_R07C01_Red.idat 13676229 IDAT Red NA CPTAC3 a3bdeddd-5c43-4403-8516-f42f0e053036 6ea5a56535c304047a7f9e0d87619692 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.miRNA-Seq.S42_L002_R1.T C3N-01517 GBM miRNA-Seq tumor CPT0167530009 181119_UNC31-K00269_0165_AH27WCBBXY_GTCCGC_S42_L002_R1_001.unaln.bam 217616097 BAM S42_L002_R1 submitted_unaligned CPTAC3 17498b69-39c5-4e7c-b23a-bdd65eb3ac62 c8e81bd30ed578a679ca307c7633f1bd {"aliquot_tag": "ALQ_62c52f40", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.miRNA-Seq.T.hg38 C3N-01517 GBM miRNA-Seq tumor CPT0167530009 8812f0df-eeda-4fbb-a963-5e919b0383ba_mirnaseq_gdc_realn.bam 244342555 BAM harmonized CPTAC3 be32ca8b-8dc5-46d1-a4b6-1742df099b7a 9d2aff85594813da1548aeea96e20c6e {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.RNA-Seq.chimeric.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.chimeric.gdc_realn.bam 27421115 BAM chimeric harmonized CPTAC3 5acc91fd-6eed-4168-b4a5-4fa758d4d66c ba820a18cfc9362881d9c24c062337ef {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.RNA-Seq.genomic.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.genomic.gdc_realn.bam 7634364751 BAM genomic harmonized CPTAC3 fe11a9d7-7d78-44b5-b36c-d7d789f752bc 4043d2d047af303b3f7b0b41b9cbb0ee {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.RNA-Seq.S2_L007_R1.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3618364620 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 6a90c04b-6626-4980-82b7-ecbd0efbbedf a27195b5588e5805cb308362a5ed2ef5 {"aliquot_tag": "ALQ_62c52f40", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.RNA-Seq.S2_L007_R2.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3779835090 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 0cad2950-450a-41ad-9c84-42c8a152b18d 6675d94e2196c435392b2c0d067880ce {"aliquot_tag": "ALQ_62c52f40", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.RNA-Seq.transcriptome.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.transcriptome.gdc_realn.bam 9580961058 BAM transcriptome harmonized CPTAC3 e7c3da61-a6bd-4c23-8dfd-3d3981462a1a a3bf77a34ec0e539e754c7f912ac96cf {"aliquot_tag": "ALQ_62c52f40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.WGS.N C3N-01517 GBM WGS blood_normal CPT0167590002 CPT0167590002.WholeGenome.RP-1303.bam 66236518222 BAM submitted_aligned CPTAC3 8a5f9098-6a49-4b60-be2d-2e2b86d1f208 208cbfcf3367a73f7992801bf6a64f73 {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01517.WGS.N.hg38 C3N-01517 GBM WGS blood_normal CPT0167590002 c5532f02-56c1-4f58-8b21-238146948cf5_wgs_gdc_realn.bam 95893216700 BAM harmonized CPTAC3 99114da3-f483-48a9-bdad-c734fa942f52 5440d8a6d29eea51e7a32a7ed9b0f51f {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01517.WGS.T C3N-01517 GBM WGS tumor CPT0167530006 CPT0167530006.WholeGenome.RP-1303.bam 52528939852 BAM submitted_aligned CPTAC3 9ec6fa98-38f1-4f9b-8d1a-44c17497dc1c 6355e50226434e218defc8555de4b16f {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.WGS.T.hg38 C3N-01517 GBM WGS tumor CPT0167530006 17b3d2e1-0d12-438c-88ec-a8e7acf2f565_wgs_gdc_realn.bam 77834799761 BAM harmonized CPTAC3 693f85ac-183b-4e68-817e-e2c16c0b874b 0bc801f1920fb635e9eccb762d00d592 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.WXS.N C3N-01517 GBM WXS blood_normal CPT0167590002 CPT0167590002.WholeExome.RP-1303.bam 26810182420 BAM submitted_aligned CPTAC3 6ea63211-d49f-4de4-ae5f-78b5aaba5791 084daabf0422daf31fefbafc99e82fa1 {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01517.WXS.N.hg38 C3N-01517 GBM WXS blood_normal CPT0167590002 c5532f02-56c1-4f58-8b21-238146948cf5_wxs_gdc_realn.bam 35597663924 BAM harmonized CPTAC3 a6dc9bb3-1335-4444-a152-62265639a7e5 135946503bad72f507ddaf933c0c7f58 {"aliquot_tag": "ALQ_bfa7ee69", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01517.WXS.T C3N-01517 GBM WXS tumor CPT0167530006 CPT0167530006.WholeExome.RP-1303.bam 28507736551 BAM submitted_aligned CPTAC3 dedabfd7-8876-4390-95fb-88641d141e20 a358ec31c2359a5aef5ae0237ef275f2 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01517.WXS.T.hg38 C3N-01517 GBM WXS tumor CPT0167530006 17b3d2e1-0d12-438c-88ec-a8e7acf2f565_wxs_gdc_realn.bam 38467534108 BAM harmonized CPTAC3 851a0129-33d1-45c6-be4d-dbed07b6b241 2ae4c283315ec4a9997bc93f51415bc5 {"aliquot_tag": "ALQ_f27a32d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.MethArray.Green.T C3N-01518 GBM Methylation_Array tumor CPT0167640006 203027390081_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1660e1ab-e423-4e08-a1d8-fe7c7e746d90 51962e579eee578243b39da9bebde0c1 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.MethArray.Red.T C3N-01518 GBM Methylation_Array tumor CPT0167640006 203027390081_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 586815d5-5be7-4f83-b496-eb49410791f5 2c94523bb7757b60481364c0ba48a624 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.miRNA-Seq.S43_L002_R1.T C3N-01518 GBM miRNA-Seq tumor CPT0167640009 181119_UNC31-K00269_0165_AH27WCBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 264705981 BAM S43_L002_R1 submitted_unaligned CPTAC3 4ecbfeb6-6b0c-44ca-b20b-b610620822e1 e522e9a3703173f130c3722b0deddb7b {"aliquot_tag": "ALQ_567181fe", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.miRNA-Seq.T.hg38 C3N-01518 GBM miRNA-Seq tumor CPT0167640009 02eb896a-7db9-4cf5-a8f4-b685afe026df_mirnaseq_gdc_realn.bam 310341753 BAM harmonized CPTAC3 3a8bb080-2309-499b-b840-40e33c8c291c 5d7447568d51fe32a68a28b48b605498 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.RNA-Seq.chimeric.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.chimeric.gdc_realn.bam 35650481 BAM chimeric harmonized CPTAC3 efeb45fd-822c-46ee-8b6e-d31fc7a5c9e9 a858e7e6e479de1a502a84aabf50f8d6 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.RNA-Seq.genomic.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.genomic.gdc_realn.bam 9338322289 BAM genomic harmonized CPTAC3 6849f874-a34a-44c6-a708-6db2a2ccdc10 e70432537fd99cc32949e9fee9643250 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.RNA-Seq.S1_L007_R1.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4361775821 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 b2aafa3a-4775-467c-80bd-ab1e0fb066cd eddf0e5174a0b270b486da155274fabf {"aliquot_tag": "ALQ_567181fe", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.RNA-Seq.S1_L007_R2.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4673953394 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 172af382-b92b-46ec-a3a0-e64df197f327 8ab58c38ef873c14e6f727759ac5a092 {"aliquot_tag": "ALQ_567181fe", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.RNA-Seq.transcriptome.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.transcriptome.gdc_realn.bam 12097908837 BAM transcriptome harmonized CPTAC3 e9c02a5c-69b3-49ff-80b4-69bda66a24ee 617251201681aa6f4e495eda49e8d534 {"aliquot_tag": "ALQ_567181fe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.WGS.N C3N-01518 GBM WGS blood_normal CPT0167700002 CPT0167700002.WholeGenome.RP-1303.bam 61669542373 BAM submitted_aligned CPTAC3 37fc6d5e-dd8d-4455-9b59-79bc87e2560c 8083347f1e153802f8d94307c797179c {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01518.WGS.N.hg38 C3N-01518 GBM WGS blood_normal CPT0167700002 c5e6f8ca-f7f9-48e5-b8b2-cf81562b323e_wgs_gdc_realn.bam 90499823103 BAM harmonized CPTAC3 94e28d29-60d0-4731-9cc1-a406c71c384d af350601a2fc32639960e4899c101304 {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01518.WGS.T C3N-01518 GBM WGS tumor CPT0167640006 CPT0167640006.WholeGenome.RP-1303.bam 64171774463 BAM submitted_aligned CPTAC3 cc5bd435-771c-44ce-8d4a-7163ba815452 b4e0dfd2f7dcd9bb4e91458ec26e225e {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.WGS.T.hg38 C3N-01518 GBM WGS tumor CPT0167640006 9ea35a6a-671b-47cc-95fa-53b5f461bc11_wgs_gdc_realn.bam 93619406656 BAM harmonized CPTAC3 254d09e0-182a-492d-934c-764c730d57a8 8fc067fcfdbf7cad387db774717f1617 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.WXS.N C3N-01518 GBM WXS blood_normal CPT0167700002 CPT0167700002.WholeExome.RP-1303.bam 21593910203 BAM submitted_aligned CPTAC3 6658ac2d-9ec8-4a54-aadc-6710fd4ce32e 1e9b706630cdcaa536fde019dd602560 {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01518.WXS.N.hg38 C3N-01518 GBM WXS blood_normal CPT0167700002 c5e6f8ca-f7f9-48e5-b8b2-cf81562b323e_wxs_gdc_realn.bam 29514189741 BAM harmonized CPTAC3 a14a72f0-38d2-47f9-b6e9-2de2ab03808d 7071745b81e06a9c9df2bc6512701015 {"aliquot_tag": "ALQ_ff7f2d13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01518.WXS.T C3N-01518 GBM WXS tumor CPT0167640006 CPT0167640006.WholeExome.RP-1303.bam 30316298337 BAM submitted_aligned CPTAC3 e22e367a-73a6-4d5a-abce-9fd2c6539727 9140d6c77f1c7361a37894472fd55363 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01518.WXS.T.hg38 C3N-01518 GBM WXS tumor CPT0167640006 9ea35a6a-671b-47cc-95fa-53b5f461bc11_wxs_gdc_realn.bam 40407919871 BAM harmonized CPTAC3 f945ac5e-9e1a-4d20-af3a-02f9dcee7876 aed886fce6a48ca19fb62e8e6eea2696 {"aliquot_tag": "ALQ_c6ce9c6f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.MethArray.Green.T C3N-01520 UCEC Methylation_Array tumor CPT0076860009 202178770083_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9682606c-e69c-4633-a518-ef13e4a0c5fd 53fe0efdc2a18825a0ba6c00e34001a8 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.MethArray.Red.T C3N-01520 UCEC Methylation_Array tumor CPT0076860009 202178770083_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 b2e23e2f-3266-4a75-8554-7a6ac46ae3a3 fe39952467cdf6a5787cb07feae4978e {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.chimeric.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.chimeric.gdc_realn.bam 184458655 BAM chimeric harmonized CPTAC3 ada480d6-97d8-409a-a855-c7df68658f6f bb440c71a36737add4c4150bd668b4b9 {"aliquot_tag": "ALQ_fba2b116", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.chimeric.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.chimeric.gdc_realn.bam 292074538 BAM chimeric harmonized CPTAC3 f1cc4b67-a664-4f57-b530-1bbac3fa04da 5aa3d0ef96c2ccb9406116e4628e31a4 {"aliquot_tag": "ALQ_21da02b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.genomic.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.genomic.gdc_realn.bam 9590208993 BAM genomic harmonized CPTAC3 44ae869f-f65d-4b15-a8a3-86a1a5de14df 94fb7b84b5c761ec3f49b13b14a64120 {"aliquot_tag": "ALQ_fba2b116", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.genomic.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.genomic.gdc_realn.bam 15306118143 BAM genomic harmonized CPTAC3 01917716-235a-4a1a-a097-234b8fab513a 30eb7db505d48a31c88007ed2aaa7d00 {"aliquot_tag": "ALQ_21da02b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.S2_L007_R1.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R1_001.fastq.gz 4667458627 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 a43b1b15-3b59-4e11-b589-8d89b7e63209 0f6a9838cd5fcadd275d825367d43859 {"aliquot_tag": "ALQ_fba2b116", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.S2_L007_R2.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R2_001.fastq.gz 5031406044 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 b3135f8c-5c50-41a8-ae39-a427c93a993f fbffd2ca09af7b2afa761033f23feab0 {"aliquot_tag": "ALQ_fba2b116", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.S5_R1.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R1_001.fastq.gz 9890179819 FASTQ S5_R1 submitted_unaligned CPTAC3 0c4ae450-999f-451c-a337-9d2065d27a6a 0ee54c836faae4604d06f84e48ebe5f0 {"aliquot_tag": "ALQ_21da02b0", "sample": "S5", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.S5_R2.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R2_001.fastq.gz 10396004046 FASTQ S5_R2 submitted_unaligned CPTAC3 e000df0d-00c1-447a-8b75-3d93e441a397 38168e0d3c336a787108e3f59ba993a2 {"aliquot_tag": "ALQ_21da02b0", "sample": "S5", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.transcriptome.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.transcriptome.gdc_realn.bam 12913929121 BAM transcriptome harmonized CPTAC3 ec6e6aa0-213d-465a-bb81-9d9fd1be70f8 c7868484e78a9e51015da44c0e1d0046 {"aliquot_tag": "ALQ_fba2b116", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.RNA-Seq.transcriptome.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.transcriptome.gdc_realn.bam 7680379816 BAM transcriptome harmonized CPTAC3 4f88d89e-62ee-41e4-9344-d44972f8c107 0f0e7c71efb664746e177ac92d614a5a {"aliquot_tag": "ALQ_21da02b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.WGS.N C3N-01520 UCEC WGS blood_normal CPT0076940002 CPT0076940002.WholeGenome.RP-1303.bam 62916695063 BAM submitted_aligned CPTAC3 c8b83d9e-42d2-41f4-9a34-2c1bc1a5729c 6764764cb37e5946aa9bb55a8a7b4430 {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01520.WGS.N.hg38 C3N-01520 UCEC WGS blood_normal CPT0076940002 22d8111e-ed85-442f-a8ff-2bc44792e155_gdc_realn.bam 91255036552 BAM harmonized CPTAC3 021c018b-52e5-4d30-86e0-a0758b6eb859 74348a916501ab87b030bfb6b2f0f6c8 {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01520.WGS.T C3N-01520 UCEC WGS tumor CPT0076860009 CPT0076860009.WholeGenome.RP-1303.bam 74481411422 BAM submitted_aligned CPTAC3 3c9e671b-413c-45e4-a004-0fa9a7cb7032 57bc5ae85472732ea73960c2851fc165 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.WGS.T.hg38 C3N-01520 UCEC WGS tumor CPT0076860009 7dea6331-0e16-40e5-b908-e9b403f848f6_gdc_realn.bam 114854625364 BAM harmonized CPTAC3 d4f7f077-eadb-471d-8ab2-dcc8035aa087 8de8cd3fa3311e701796a430e3c13078 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.WXS.N C3N-01520 UCEC WXS blood_normal CPT0076940002 CPT0076940002.WholeExome.RP-1303.bam 34178671220 BAM submitted_aligned CPTAC3 c55d1518-f131-4269-88df-57584fe2c37e 0cfa49005e6a7412e62be717a62aa77b {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01520.WXS.N.hg38 C3N-01520 UCEC WXS blood_normal CPT0076940002 22d8111e-ed85-442f-a8ff-2bc44792e155_gdc_realn.bam 46442780787 BAM harmonized CPTAC3 76483f05-7126-45ca-ada5-39b1d8af487c 9277781a48c6d5276130a6091592f896 {"aliquot_tag": "ALQ_4d53f5ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01520.WXS.T C3N-01520 UCEC WXS tumor CPT0076860009 CPT0076860009.WholeExome.RP-1303.bam 37684809255 BAM submitted_aligned CPTAC3 42f49422-4ff7-43f6-9184-ebd29296debb 7517e95f6e9e563c1690e4305e717343 {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01520.WXS.T.hg38 C3N-01520 UCEC WXS tumor CPT0076860009 7dea6331-0e16-40e5-b908-e9b403f848f6_gdc_realn.bam 52015710496 BAM harmonized CPTAC3 03c88b74-e1bd-4a90-ac3d-2fbd9bdfaa2b 79a8f741f4ee8d92c79a5926d7c0e12c {"aliquot_tag": "ALQ_6b1dac87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.MethArray.Green.T C3N-01521 UCEC Methylation_Array tumor CPT0076680009 202176300039_R05C01_Grn.idat 13676225 IDAT Green NA CPTAC3 54bd644d-04a9-47fb-86fd-5b39f9a3070d c1715c2b0f18e92fde93f43f505b073d {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.MethArray.Red.T C3N-01521 UCEC Methylation_Array tumor CPT0076680009 202176300039_R05C01_Red.idat 13676225 IDAT Red NA CPTAC3 c1798bb1-0311-43f1-99ba-eaba1b42f2d5 2d378953341dda567a4c99b10b8091b9 {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.miRNA-Seq.S5_L008_R1.T C3N-01521 UCEC miRNA-Seq tumor CPT0076680006 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L008_R1_001.unaln.bam 240573660 BAM S5_L008_R1 submitted_unaligned CPTAC3 35ba21c9-eba6-4f3f-b514-49d4cc3d6f61 6dc8b3df2caa2b548f8d4d2ea30faa96 {"aliquot_tag": "ALQ_7e986e07", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.miRNA-Seq.T.hg38 C3N-01521 UCEC miRNA-Seq tumor CPT0076680006 c97d99fc-8005-48b7-a015-d566fbcf939f_mirnaseq_gdc_realn.bam 265964577 BAM harmonized CPTAC3 b4f25abb-063b-4685-8206-ccdbc0ece742 0f72bf45ce9e6f210823a6a6ac5fae92 {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.chimeric.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.chimeric.gdc_realn.bam 231388191 BAM chimeric harmonized CPTAC3 094589cc-5fdb-459d-880b-5a00af568045 283dfe5374785aaec720e239544f0223 {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.chimeric.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.chimeric.gdc_realn.bam 161032463 BAM chimeric harmonized CPTAC3 368ddef6-d51c-487f-be0c-c78173f2339b 03b3d3239218b81c94cc670c736d438d {"aliquot_tag": "ALQ_611030a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.genomic.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.genomic.gdc_realn.bam 7904311139 BAM genomic harmonized CPTAC3 854f3c1d-3b0e-43af-9472-e94319f50c9f e3eb7d7fef004d533bc9687d50743628 {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.genomic.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.genomic.gdc_realn.bam 9574238401 BAM genomic harmonized CPTAC3 abe02a64-d0ad-4dc2-9ded-92d357ea8624 0641b895b1cad5bbb344b7f0fc1649fb {"aliquot_tag": "ALQ_611030a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.S3_L007_R1.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3628451536 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 0acc093f-71f7-4f80-a9b2-20e017cbd7e4 a158fcdf9c88b27c7bf0a1e9a9ef04d1 {"aliquot_tag": "ALQ_7e986e07", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.S3_L007_R2.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 3870291857 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 1b05444d-acbf-4aa3-9981-0803c58db907 741c08c4ef72952697d604b7dfd10be5 {"aliquot_tag": "ALQ_7e986e07", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.S59_R1.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R1_001.fastq.gz 5998969341 FASTQ S59_R1 submitted_unaligned CPTAC3 b4a80f50-0c06-48b6-a02c-e06b9b734727 561cc6955be33d38e3eafd32521352f3 {"aliquot_tag": "ALQ_611030a0", "sample": "S59", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.S59_R2.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R2_001.fastq.gz 6190702443 FASTQ S59_R2 submitted_unaligned CPTAC3 f4046dfe-3bda-45d4-abb3-d4586b5e3802 d3dd17578eb9d91f3b29d29be4abd64c {"aliquot_tag": "ALQ_611030a0", "sample": "S59", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.transcriptome.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.transcriptome.gdc_realn.bam 10934712720 BAM transcriptome harmonized CPTAC3 1a92c401-5acd-4512-8fa6-830d60383923 e491aa27629cb848a9a0d52ca6e237fa {"aliquot_tag": "ALQ_7e986e07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.RNA-Seq.transcriptome.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.transcriptome.gdc_realn.bam 6108001345 BAM transcriptome harmonized CPTAC3 9f8759de-ae71-4902-bdd3-0a5c4721ddc5 a36032e1608e5abfe11aa87620194649 {"aliquot_tag": "ALQ_611030a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.WGS.N C3N-01521 UCEC WGS blood_normal CPT0076760002 CPT0076760002.WholeGenome.RP-1303.bam 63986772932 BAM submitted_aligned CPTAC3 8117a468-0975-4be1-a19a-4f962c4e55f3 802aa52b371cab4c8413bc6d74b456b6 {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01521.WGS.N.hg38 C3N-01521 UCEC WGS blood_normal CPT0076760002 ac16a9c0-e9f4-4bdf-ba76-78d9438f0b10_gdc_realn.bam 93588727144 BAM harmonized CPTAC3 de536564-ee0b-471a-a157-203f5b67fb71 5fe746ea0808a1b78d98fa9e58fad434 {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01521.WGS.T C3N-01521 UCEC WGS tumor CPT0076680009 CPT0076680009.WholeGenome.RP-1303.bam 64693443226 BAM submitted_aligned CPTAC3 6fd00a5f-6e62-483f-920a-9ec4bbafe9f6 3e6689db72b9ee2bb5c89e8e3471921c {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.WGS.T.hg38 C3N-01521 UCEC WGS tumor CPT0076680009 ff6a7b50-074e-4229-a5b1-282d7e4c9208_gdc_realn.bam 97904942254 BAM harmonized CPTAC3 2c1c0ba9-0049-4e08-adbd-173e7d68433d e7f57605bf56bd0b1d49273783c7ee5d {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.WXS.N C3N-01521 UCEC WXS blood_normal CPT0076760002 CPT0076760002.WholeExome.RP-1303.bam 28125822236 BAM submitted_aligned CPTAC3 680b963a-9f31-450b-b00d-14ecf777079d 4c5b465fcdb5111c2b2e2597074fb70f {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01521.WXS.N.hg38 C3N-01521 UCEC WXS blood_normal CPT0076760002 ac16a9c0-e9f4-4bdf-ba76-78d9438f0b10_gdc_realn.bam 38183487649 BAM harmonized CPTAC3 c670d6d3-0ad3-481c-9336-20d351ffc7dc a5e2a795f5ac31d6b6af86c946af4d67 {"aliquot_tag": "ALQ_d99c7da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01521.WXS.T C3N-01521 UCEC WXS tumor CPT0076680009 CPT0076680009.WholeExome.RP-1303.bam 24178811389 BAM submitted_aligned CPTAC3 2337201b-200c-4135-ab99-f982407546ee 7d09f1c87ecbdf705d7c5a7488eeb418 {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01521.WXS.T.hg38 C3N-01521 UCEC WXS tumor CPT0076680009 ff6a7b50-074e-4229-a5b1-282d7e4c9208_gdc_realn.bam 33265636097 BAM harmonized CPTAC3 1c684370-d3c3-4bf9-82df-6cd1a2b107e2 ea6064e5174c96977678e3924852fefe {"aliquot_tag": "ALQ_ee277396", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_1fe5503b.MethArray.Green.T C3N-01522 CCRCC Methylation_Array tumor CPT0077120009 204372030085_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 8d1029d1-f05e-46c0-94ac-b0ad150bd8b0 06d52e876412802fb89c2b46bfbb8b58 {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_1fe5503b.MethArray.Red.T C3N-01522 CCRCC Methylation_Array tumor CPT0077120009 204372030085_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 5167377c-2ea7-4631-9fd0-c908a306d45c f9c92003acac758104b8d3c84914e09c {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_1fe5503b.WGS.T C3N-01522 CCRCC WGS tumor CPT0077120009 CPT0077120009.WholeGenome.RP-2158.bam 23337018319 BAM submitted_aligned CPTAC3 0bac1c9f-749a-404d-889e-be28292767c6 9414211fe5dee96bce068ef6cd4f6039 {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_1fe5503b.WGS.T.hg38 C3N-01522 CCRCC WGS tumor CPT0077120009 f6fea3d8-c415-4e0d-a215-91be2d9a458a_wgs_gdc_realn.bam 69246786108 BAM harmonized CPTAC3 b1f22370-f3c9-4831-a00f-9d437722149d 364fae6dc82ee1b7beca29748d339c1a {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_1fe5503b.WXS.T C3N-01522 CCRCC WXS tumor CPT0077120009 CPT0077120009.WholeExome.RP-1303.bam 18984065266 BAM submitted_aligned CPTAC3 d462bdc3-8afe-441d-b985-1c50c162571b b6e4b18faf8a6aae0f682620fedd4bcf {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_1fe5503b.WXS.T.hg38 C3N-01522 CCRCC WXS tumor CPT0077120009 f6fea3d8-c415-4e0d-a215-91be2d9a458a_wxs_gdc_realn.bam 25850689708 BAM harmonized CPTAC3 a9ff1801-fb91-42cf-a890-c7fe7ff2755c 667acd3ce039e261d56b666157dca2ab {"aliquot_tag": "DUP_1fe5503b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_2285798b.MethArray.Green.T C3N-01522 CCRCC Methylation_Array tumor CPT0077130009 204372030011_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 9fdbbae6-8f71-40e8-8b9d-3681affacbc7 6c951ff3fcdd878fdc0e0d1665b1dd44 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_2285798b.MethArray.Red.T C3N-01522 CCRCC Methylation_Array tumor CPT0077130009 204372030011_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 1e891c17-304a-496e-a384-f9d036b5ab05 8dd4fb81a0ced9423b693a3c0001f812 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_2285798b.WGS.T C3N-01522 CCRCC WGS tumor CPT0077130009 CPT0077130009.WholeGenome.RP-2158.bam 28627966134 BAM submitted_aligned CPTAC3 d830215c-127b-464a-99a5-2e14c74aa7fe 5f0923d8d8c0190bec39d82f368e7924 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_2285798b.WGS.T.hg38 C3N-01522 CCRCC WGS tumor CPT0077130009 3e70ad98-e034-4c2e-9796-fb3536c6e86a_wgs_gdc_realn.bam 81827325198 BAM harmonized CPTAC3 ea782d56-f93e-440c-9acb-67f6de0d71b9 d55e95904aab8fcc556c3edbd55da6af {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_2285798b.WXS.T C3N-01522 CCRCC WXS tumor CPT0077130009 CPT0077130009.WholeExome.RP-1303.bam 19959736594 BAM submitted_aligned CPTAC3 e0f1306e-82c3-45c9-a59a-8dacdbd0797e 0b319d81dc8fa7866d7b91dc90e39598 {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_2285798b.WXS.T.hg38 C3N-01522 CCRCC WXS tumor CPT0077130009 3e70ad98-e034-4c2e-9796-fb3536c6e86a_wxs_gdc_realn.bam 28179248185 BAM harmonized CPTAC3 2c3543ba-ca5d-43d0-89fd-325cd6379c9f 157f7f5e18c8c19d44917b676867b9dd {"aliquot_tag": "DUP_2285798b", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_8f5a4daa.miRNA-Seq.S21_L004_R1.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077120006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L004_R1_001.unaln.bam 353133256 BAM S21_L004_R1 submitted_unaligned CPTAC3 6bfbb836-949f-4354-b723-dbdfea4fd255 f2fccb3ddb01d17c766085046a8253ce {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_8f5a4daa.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077120006 6725a6d9-6ef7-422b-a3c7-6b0951d5d246_mirnaseq_gdc_realn.bam 384573377 BAM harmonized CPTAC3 6feb38b3-5a4c-4352-b981-47e61ba7b39c 413f18d5faed76023cbdf9f45220d64c {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_8f5a4daa.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.chimeric.gdc_realn.bam 224714554 BAM chimeric harmonized CPTAC3 66fc3b48-89cc-4ab9-a247-3fb69a1abb9f 56a3ec46351240bb85585239585e9e87 {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_8f5a4daa.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.genomic.gdc_realn.bam 9057133159 BAM genomic harmonized CPTAC3 68a9a9d7-a41d-4f42-b20b-6bf058b9628b 0c7db716431580a97818927060183005 {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_8f5a4daa.RNA-Seq.S5_L002_R1.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4358892188 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 f077a03a-268f-45d7-9010-417fe026a87b 4d1dd4ded0521164cf679200ba356b10 {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_8f5a4daa.RNA-Seq.S5_L002_R2.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4905885878 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 c2771b42-ead4-4fa2-8070-33bae5712e94 e18f2808cde806b6e32fbbee4648d61d {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_8f5a4daa.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.transcriptome.gdc_realn.bam 12153260606 BAM transcriptome harmonized CPTAC3 f279c190-505d-4bfd-a1b0-446aca448fcc b4f653e46f2fc359bc5815d681196a8e {"aliquot_tag": "DUP_8f5a4daa", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_b23a641a.miRNA-Seq.S2_L004_R1.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077130006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L004_R1_001.unaln.bam 331444243 BAM S2_L004_R1 submitted_unaligned CPTAC3 035f9d77-c7f9-494a-8666-6c1a9d644dbc 91167a486a0231b4132bae04f155346a {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_b23a641a.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077130006 f888c0ee-7aca-4e9d-838a-d8ebc7eef5cb_mirnaseq_gdc_realn.bam 360554761 BAM harmonized CPTAC3 6afcc2b2-7ae7-429e-ac17-8d8ce9a3b0e3 77ec184374f5984909b52cfbd71e9044 {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_b23a641a.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.chimeric.gdc_realn.bam 151682204 BAM chimeric harmonized CPTAC3 ece63487-d7e9-4d83-9cb6-9d7bb70c28a2 45103d4fbc4259a1bfd3370c9f004efa {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_b23a641a.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.genomic.gdc_realn.bam 7612857625 BAM genomic harmonized CPTAC3 164eefe0-ea79-43c0-aae4-df4037a103b3 8ed35f8c09bfe62a676e343903606a2e {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_b23a641a.RNA-Seq.S6_L002_R1.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R1_001.fastq.gz 3718770514 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 408e63b6-0791-4337-bdb3-7287703499da 6bdd48cf9ac94bd0936929dc858ef367 {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_b23a641a.RNA-Seq.S6_L002_R2.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R2_001.fastq.gz 4224799005 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 2fd64739-e004-49a1-989a-b8524889d712 066e22d27426978c88fdc628e057fa03 {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.DUP_b23a641a.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.transcriptome.gdc_realn.bam 9372587238 BAM transcriptome harmonized CPTAC3 24dda277-269e-45d9-86f9-d4d4bab235d6 08d5a2cfb15c2501c10aa51e67fca0be {"aliquot_tag": "DUP_b23a641a", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.MethArray.Green.A C3N-01522 CCRCC Methylation_Array tissue_normal CPT0077140009 204930640061_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 d0f98827-4f34-4b18-8efd-d49a5857f486 c8e22a116ecd24b8e7bb74b7837da44b {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.MethArray.Green.T C3N-01522 CCRCC Methylation_Array tumor CPT0077110009 202178770143_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 a8c16193-0217-4f9e-ae09-6c7c6dcbd51f af8d2b334dc67930cc41873696f9961f {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.MethArray.Red.A C3N-01522 CCRCC Methylation_Array tissue_normal CPT0077140009 204930640061_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 59b1c268-198c-4dd8-8517-399d287ef804 a8ab0f18d1ba93c8f0d60a19290aa1bf {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.MethArray.Red.T C3N-01522 CCRCC Methylation_Array tumor CPT0077110009 202178770143_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 d5083d8f-6cad-48e9-86a0-6a8127558d7a 2d2fcc04d3d11de38f35ee30997c57cc {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.miRNA-Seq.A.hg38 C3N-01522 CCRCC miRNA-Seq tissue_normal CPT0077140006 6bf0111d-3285-4ee7-a948-72ddfec8b7ad_mirnaseq_gdc_realn.bam 196895788 BAM harmonized CPTAC3 94d8757f-32f4-4567-bef8-fa0ac8291dda f9826f8ad4da425b5226d75d42d4f6d9 {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.miRNA-Seq.S18_L003_R1.A C3N-01522 CCRCC miRNA-Seq tissue_normal CPT0077140006 181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 175907803 BAM S18_L003_R1 submitted_unaligned CPTAC3 410c5ba7-cffa-47e2-875a-cd4ecc6bcd26 b6c26cb10e1a4ad1f02cc72b44b373ac {"aliquot_tag": "ALQ_1ab80a", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.miRNA-Seq.S7_L008_R1.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077110006 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L008_R1_001.unaln.bam 256370556 BAM S7_L008_R1 submitted_unaligned CPTAC3 c806271f-a03b-4a34-a792-70fc1508033f d89b5db2805f4ee2befe481d103b174b {"aliquot_tag": "ALQ_c8fa377a", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077110006 e2da7550-76d7-497c-b6ca-e6966d7a6340_mirnaseq_gdc_realn.bam 281655089 BAM harmonized CPTAC3 1dbab311-7f20-4c09-8bdd-3c2c7e853cb8 e8b9e7d5817c2560e988e9d84d977a69 {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.RNA-Seq.chimeric.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.chimeric.gdc_realn.bam 70651261 BAM chimeric harmonized CPTAC3 a3d11894-20a8-4996-81db-b00b1477a834 3d2ece7a83259a5a6209ae4379b6c7cd {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.chimeric.gdc_realn.bam 212911222 BAM chimeric harmonized CPTAC3 3b6e189f-a4ee-4fab-9455-61c4c11f2058 33f591d237f6eed74122815e27744625 {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.RNA-Seq.genomic.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.genomic.gdc_realn.bam 8447572020 BAM genomic harmonized CPTAC3 ec0aae63-d002-4934-82e5-e1eb8b3d4816 94024af76f86eb03e30142334e9c12c0 {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.genomic.gdc_realn.bam 6873011211 BAM genomic harmonized CPTAC3 561a3b0a-51d2-4d8d-a9d0-18760ffc19ff 5fa220c4b0101729b0464e96c57452ea {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.RNA-Seq.S16_L004_R1.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R1_001.fastq.gz 4323260349 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 c5bcda2b-0deb-4201-8a2e-a084eb4e7913 82d87a254733a01ab8a69c9a1e708058 {"aliquot_tag": "ALQ_1ab80a", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.RNA-Seq.S16_L004_R2.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R2_001.fastq.gz 4165359528 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 9e46539f-5d80-471e-9d57-2ef355a2c155 1a73b1c0ec657b388739963c3e7876e7 {"aliquot_tag": "ALQ_1ab80a", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.RNA-Seq.S1_L007_R1.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R1_001.fastq.gz 3487797290 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 2627ae9b-1a95-4fff-9221-647706199549 6bd632aad639bb5ea4da5d8a08455aec {"aliquot_tag": "ALQ_c8fa377a", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.RNA-Seq.S1_L007_R2.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R2_001.fastq.gz 3799127488 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 ba7d5cb5-d91f-4501-a9d4-f0edf2a247d4 c787abc84f2a73be07b92709bf7660f5 {"aliquot_tag": "ALQ_c8fa377a", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.RNA-Seq.transcriptome.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.transcriptome.gdc_realn.bam 9892666763 BAM transcriptome harmonized CPTAC3 b539a9ea-5918-4352-8e00-72323931517b 33bb4b6d117950d78830d69aa305fd40 {"aliquot_tag": "ALQ_1ab80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.transcriptome.gdc_realn.bam 9952414582 BAM transcriptome harmonized CPTAC3 55a0106a-0c91-4705-8749-ad8f7aebef9c 0802e845769688aa565a21c0c24af3f3 {"aliquot_tag": "ALQ_c8fa377a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.WGS.A C3N-01522 CCRCC WGS tissue_normal CPT0077140009 CPT0077140009.WholeGenome.RP-1303.bam 63343250805 BAM submitted_aligned CPTAC3 7864507e-0e85-436d-99af-c1a793a08449 c6f4cc86983267b6e3b7c96a175ac837 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.WGS.A.hg38 C3N-01522 CCRCC WGS tissue_normal CPT0077140009 63ac8e39-5100-4040-8cf7-09f9d888c895_wgs_gdc_realn.bam 92338829951 BAM harmonized CPTAC3 7e9500a6-3b7c-4403-9c7a-ffe551ae0b54 1f84410fb18545ba234e89bee9bd8217 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.WGS.N C3N-01522 CCRCC WGS blood_normal CPT0077230002 CPT0077230002.WholeGenome.RP-1303.bam 75459270597 BAM submitted_aligned CPTAC3 7b338c08-40fd-4022-b035-c227ebe56d5d 56ecea1135e410a13c7c938f8cfcd6a2 {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01522.WGS.N.hg38 C3N-01522 CCRCC WGS blood_normal CPT0077230002 54d1fe86-bb61-483d-a650-a13697f5e4b5_gdc_realn.bam 113123467536 BAM harmonized CPTAC3 b535c809-a139-4e3c-9cb9-ce2e83619efe 20a62c1282af0d06454b89ecf8ce5df4 {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01522.WGS.T C3N-01522 CCRCC WGS tumor CPT0077110009 CPT0077110009.WholeGenome.RP-1303.bam 70512189718 BAM submitted_aligned CPTAC3 65eba645-4d66-4dd0-a947-2b295037b321 195495731d5006267178f074d014e913 {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.WGS.T.hg38 C3N-01522 CCRCC WGS tumor CPT0077110009 c4027887-51e8-40b2-956a-ba6daf3ee157_gdc_realn.bam 106403631816 BAM harmonized CPTAC3 f6c3b4fb-9203-4cda-baa5-a41b647a14fc 002d6665d0beabf2e172bf50cd1d8522 {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.WXS.A C3N-01522 CCRCC WXS tissue_normal CPT0077140009 CPT0077140009.WholeExome.RP-1303.bam 29595659566 BAM submitted_aligned CPTAC3 2741386b-721f-4545-9ff8-5347475d5647 d13aa0ec3d4a9d4af792e305768820f0 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.WXS.A.hg38 C3N-01522 CCRCC WXS tissue_normal CPT0077140009 63ac8e39-5100-4040-8cf7-09f9d888c895_wxs_gdc_realn.bam 39618505461 BAM harmonized CPTAC3 a12b7054-a01c-4760-b743-5c0fa2148fc1 24d855a97099897cdf2e706d2a69c8b0 {"aliquot_tag": "ALQ_90a5a59b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01522.WXS.N C3N-01522 CCRCC WXS blood_normal CPT0077230002 CPT0077230002.WholeExome.RP-1303.bam 33107189954 BAM submitted_aligned CPTAC3 006db4eb-2028-4cba-b40f-a2da9e7831fd 64b06f1d0c313577208cd5898a55101d {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01522.WXS.N.hg38 C3N-01522 CCRCC WXS blood_normal CPT0077230002 54d1fe86-bb61-483d-a650-a13697f5e4b5_gdc_realn.bam 45116067067 BAM harmonized CPTAC3 2cfcc93b-fea4-4e4a-8ac9-e6f0202c05f7 75a29400da74144fb141f951e0caa733 {"aliquot_tag": "ALQ_33c3d2ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01522.WXS.T C3N-01522 CCRCC WXS tumor CPT0077110009 CPT0077110009.WholeExome.RP-1303.bam 32767727766 BAM submitted_aligned CPTAC3 1a93802e-a63e-40d8-985f-5a5d33ccaeee 2098f01f2e22b9ec68f43d07ca92e68e {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01522.WXS.T.hg38 C3N-01522 CCRCC WXS tumor CPT0077110009 c4027887-51e8-40b2-956a-ba6daf3ee157_gdc_realn.bam 44643903219 BAM harmonized CPTAC3 c5bffbd5-ed94-4032-ae1b-e15439ccb39f 6d98bce6d0d1e9cad0732cec826ef27e {"aliquot_tag": "ALQ_58452aeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_28eda250.MethArray.Green.T C3N-01524 CCRCC Methylation_Array tumor CPT0077300009 204367470157_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 333cf649-8535-4381-964b-a81298f7ed69 d9d84b98733872e1b4492028e3ec3e6e {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_28eda250.MethArray.Red.T C3N-01524 CCRCC Methylation_Array tumor CPT0077300009 204367470157_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 b76c3c1c-7a7f-4eff-b01e-81e1c43cdece 7bffc087b06fbdfa26ba2208394cbd9a {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_28eda250.WGS.T C3N-01524 CCRCC WGS tumor CPT0077300009 CPT0077300009.WholeGenome.RP-2158.bam 24101920492 BAM submitted_aligned CPTAC3 48f12d39-cbcf-49f6-acca-d5ec461df205 45b55980f1857c31591e9effb4cd0fef {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_28eda250.WGS.T.hg38 C3N-01524 CCRCC WGS tumor CPT0077300009 90b3bf66-2c83-415d-a71e-4ad8ac816413_wgs_gdc_realn.bam 69600506137 BAM harmonized CPTAC3 545f0cfe-8871-4ae1-ab42-8e20afaf41a4 08ceb25f262d56d5f7a0c1efdc014b3f {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_28eda250.WXS.T C3N-01524 CCRCC WXS tumor CPT0077300009 CPT0077300009.WholeExome.RP-1303.bam 16784953218 BAM submitted_aligned CPTAC3 6b0c2efa-8974-403d-8edb-fcc5801a1c22 d3b67e7a41aebbf9d3cf62527bf10071 {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_28eda250.WXS.T.hg38 C3N-01524 CCRCC WXS tumor CPT0077300009 90b3bf66-2c83-415d-a71e-4ad8ac816413_wxs_gdc_realn.bam 23237673725 BAM harmonized CPTAC3 d814d404-b80b-4fa5-9417-046b9095278e c10993beb73aeb75687b7aba46d3c2b4 {"aliquot_tag": "DUP_28eda250", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_7e1e0e15.miRNA-Seq.S23_L004_R1.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077290006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAAAAG_S23_L004_R1_001.unaln.bam 273890281 BAM S23_L004_R1 submitted_unaligned CPTAC3 fbd2e238-c5f9-4a25-8d3e-9e53b15547c3 037ca1c2b36f884fee880578e73b745d {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_7e1e0e15.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077290006 53e567f4-aaba-4360-8829-4f5229503467_mirnaseq_gdc_realn.bam 300270570 BAM harmonized CPTAC3 9fb6afe4-62c5-49bc-9c87-48945b70b154 6e6c5e23f49a79d1b3bba01f584dc9e8 {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_7e1e0e15.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.chimeric.gdc_realn.bam 225547309 BAM chimeric harmonized CPTAC3 515e1d44-42d7-47f1-b2db-6d1df0fbd5e4 8a32794a9e32e3d012e2dd9854ee77de {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_7e1e0e15.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.genomic.gdc_realn.bam 8497552412 BAM genomic harmonized CPTAC3 3ee3d63c-b529-4bce-99be-160f97a96456 6c4b7cd2a0e3b55995dbdab4b00314ec {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_7e1e0e15.RNA-Seq.S8_L002_R1.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3969477324 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 4af6c8b6-f787-4d0c-99b0-6c968c820180 8577fff723b956ba2c702af4838e1778 {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_7e1e0e15.RNA-Seq.S8_L002_R2.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4665222178 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 8d356193-a566-4fd9-a190-3b120c552740 875104c886500785331e74b77978c558 {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_7e1e0e15.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.transcriptome.gdc_realn.bam 10745384683 BAM transcriptome harmonized CPTAC3 3ad040ae-c315-4f44-bfc3-827c334533f2 889b860e8dd1f784ab310260c736c3ed {"aliquot_tag": "DUP_7e1e0e15", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_b852bfc1.miRNA-Seq.S24_L004_R1.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077300006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L004_R1_001.unaln.bam 352090110 BAM S24_L004_R1 submitted_unaligned CPTAC3 dda69548-003e-4580-9310-d11e6314de6e 5e4305397458e6decfc27331aa4fb397 {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_b852bfc1.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077300006 37f79464-7dea-4477-a95c-4d7f553dd9bb_mirnaseq_gdc_realn.bam 382376913 BAM harmonized CPTAC3 75afac11-397e-4198-a68c-96c55e6c7e6c b238e3867cd1fb940feb8aca9d202c4d {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_b852bfc1.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.chimeric.gdc_realn.bam 229457088 BAM chimeric harmonized CPTAC3 ac391e7b-26f5-40c8-84e9-5e944ed0e456 5424de51280c26dc38c88bf998cdf2ee {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_b852bfc1.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.genomic.gdc_realn.bam 8182461616 BAM genomic harmonized CPTAC3 ede4380c-70c9-4e68-b3e5-ed9154f76cc7 c33632568542632549d2216566a5fdde {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_b852bfc1.RNA-Seq.S10_L003_R1.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R1_001.fastq.gz 3834752470 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 8af7e4df-ca69-471b-a47f-2d6a3a9a5489 553f5703acec35716a91e70af5d2af38 {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_b852bfc1.RNA-Seq.S10_L003_R2.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R2_001.fastq.gz 4532509428 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 8a444662-4d13-445e-9499-f11dbae935da 0ca134e1878eb900adc5b861323fdd0d {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_b852bfc1.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.transcriptome.gdc_realn.bam 10034806326 BAM transcriptome harmonized CPTAC3 0e9ea75b-a7d0-48fe-8d9b-773e5a933517 c8210795c75e49485f9806d31f081b24 {"aliquot_tag": "DUP_b852bfc1", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_eea11384.MethArray.Green.T C3N-01524 CCRCC Methylation_Array tumor CPT0077290009 204367490048_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2c45f520-b5f7-4cbd-9e95-a99a7861d947 ee20413350470b4a22e5f61a3b4c2b34 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_eea11384.MethArray.Red.T C3N-01524 CCRCC Methylation_Array tumor CPT0077290009 204367490048_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 2f4dcc6c-c9cb-4452-b793-4901db2f867a f7af3a8921594fed9ddd711db8161f00 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_eea11384.WGS.T C3N-01524 CCRCC WGS tumor CPT0077290009 CPT0077290009.WholeGenome.RP-2158.bam 21320097856 BAM submitted_aligned CPTAC3 15ae9024-ec9c-4541-8964-ea17c38f34a8 98ce3e6bc30ba647b4abe43a10e5e0a3 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_eea11384.WGS.T.hg38 C3N-01524 CCRCC WGS tumor CPT0077290009 5d74c4a0-a436-4a24-958e-ad94a253a4bb_wgs_gdc_realn.bam 62652575893 BAM harmonized CPTAC3 76475195-2c2a-40cc-aac1-f08eac32df89 0886cb46586edc25530ad9bb0d4b535c {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_eea11384.WXS.T C3N-01524 CCRCC WXS tumor CPT0077290009 CPT0077290009.WholeExome.RP-1303.bam 18926128026 BAM submitted_aligned CPTAC3 46692914-36a7-42e4-be2d-f63229671819 d187d70802faa45bcf785ed3d051cbb8 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.DUP_eea11384.WXS.T.hg38 C3N-01524 CCRCC WXS tumor CPT0077290009 5d74c4a0-a436-4a24-958e-ad94a253a4bb_wxs_gdc_realn.bam 26233680064 BAM harmonized CPTAC3 bdd20b6a-b26a-492c-9e01-3eb5821be198 c9907ebec6b1d18deff0d992bbef2d83 {"aliquot_tag": "DUP_eea11384", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.MethArray.Green.A C3N-01524 CCRCC Methylation_Array tissue_normal CPT0077320009 204930640120_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cbe081bf-9453-429b-92fc-2e3d091937f2 4b431d8e7ed7b9e49886199901d3689a {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.MethArray.Green.T C3N-01524 CCRCC Methylation_Array tumor CPT0077310009 202178770008_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0528194a-e0c1-4d0f-86a5-ad77173dc2a1 6c8ac35343d33a2793e0c598a56ece25 {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.MethArray.Red.A C3N-01524 CCRCC Methylation_Array tissue_normal CPT0077320009 204930640120_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 ae4f43c3-e1ac-45fa-aa6e-93d8cd825b06 fd763f70b73780bb1da859a86e441d5f {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.MethArray.Red.T C3N-01524 CCRCC Methylation_Array tumor CPT0077310009 202178770008_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 08946f85-77d8-47da-827e-bcf65f59a67f ca7bfe042ba61db2785e77f0eb652fbe {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.miRNA-Seq.A.hg38 C3N-01524 CCRCC miRNA-Seq tissue_normal CPT0077320006 aa27768c-f975-4cd1-b271-4a9bab982e3e_mirnaseq_gdc_realn.bam 225032902 BAM harmonized CPTAC3 83a6d1c3-ea36-477d-8ad4-78a7281f03cd 9219c5132759555e95dcaeda10069ac6 {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.miRNA-Seq.S19_L003_R1.A C3N-01524 CCRCC miRNA-Seq tissue_normal CPT0077320006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 201410246 BAM S19_L003_R1 submitted_unaligned CPTAC3 9768e29b-6352-4f23-bf23-131546c4247b 754df03d19312763632b94b416a801b1 {"aliquot_tag": "ALQ_c292eca1", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.miRNA-Seq.S44_L002_R1.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077310006 181113_UNC31-K00269_0164_AH23NNBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 251002653 BAM S44_L002_R1 submitted_unaligned CPTAC3 7ab139b6-8554-439d-8737-440ae68417a9 f24167cac71d6a4f58a819e09f48d190 {"aliquot_tag": "ALQ_85329671", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077310006 4ee095a5-09ab-4479-82b4-e5195ddb484b_mirnaseq_gdc_realn.bam 271406534 BAM harmonized CPTAC3 b36df476-04ad-4d25-a971-b560d668a830 facd033bb08048a363458250964aa4b4 {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.RNA-Seq.chimeric.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.chimeric.gdc_realn.bam 87438298 BAM chimeric harmonized CPTAC3 d2d5c2c1-cf9e-468f-8639-3fa5e8e54a26 c6e6389f2549a5890b6742083bdb3bb1 {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.chimeric.gdc_realn.bam 154798513 BAM chimeric harmonized CPTAC3 e0f2dab2-3f82-46bd-8370-4b52e4502619 68b8584996b2a7741a257dcb66169f92 {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.RNA-Seq.genomic.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.genomic.gdc_realn.bam 7508743373 BAM genomic harmonized CPTAC3 be397fe8-24ef-4c88-996d-619315b424da 29da033281f04856ca62bf4501ddd73d {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.genomic.gdc_realn.bam 7691435230 BAM genomic harmonized CPTAC3 44d5e831-3d26-472c-a5e3-fd6fd15461bd 179c40772565cae2fbb091c9edd8ef99 {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.RNA-Seq.S4_L007_R1.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R1_001.fastq.gz 3725590065 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 5a150b59-3d3c-4be6-9c89-f8067a652e60 8ec17f8bfba6ee864acfe8d00fe51b25 {"aliquot_tag": "ALQ_85329671", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.RNA-Seq.S4_L007_R2.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R2_001.fastq.gz 4045324111 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 e12775ce-0aac-444a-8f8f-83eea65b1ce5 39c898bdf495b982d2d9da907feeeab9 {"aliquot_tag": "ALQ_85329671", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.RNA-Seq.S5_L002_R1.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R1_001.fastq.gz 3655993717 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 fa8f236e-200e-46e4-8007-936910f8863a 705fc161d5a09d1a8060276190cb9ec9 {"aliquot_tag": "ALQ_c292eca1", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.RNA-Seq.S5_L002_R2.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R2_001.fastq.gz 4048304952 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 77f448c3-5a83-4fea-95c9-8c999c378f49 1ecbc8ab6ca6487ac833b5fabb94d447 {"aliquot_tag": "ALQ_c292eca1", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.RNA-Seq.transcriptome.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.transcriptome.gdc_realn.bam 8223916750 BAM transcriptome harmonized CPTAC3 4392e372-3aff-4c7b-9c52-86163dd904b4 4e51275439ee0354e6ddfe6bc60ccb03 {"aliquot_tag": "ALQ_c292eca1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.transcriptome.gdc_realn.bam 10600808893 BAM transcriptome harmonized CPTAC3 50316fff-1696-43f8-a9a8-d36b7c9aaec7 a23949d1c7f5e3a1b0d6a8077d8764cb {"aliquot_tag": "ALQ_85329671", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.WGS.A C3N-01524 CCRCC WGS tissue_normal CPT0077320009 CPT0077320009.WholeGenome.RP-1303.bam 64244058141 BAM submitted_aligned CPTAC3 506c0a87-df32-498b-923b-6cff4399e114 e96e847d75c9a8995cbbf9ac057f059c {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.WGS.A.hg38 C3N-01524 CCRCC WGS tissue_normal CPT0077320009 5e4c455f-4a8c-4065-b845-df6d85a8df55_wgs_gdc_realn.bam 94290971310 BAM harmonized CPTAC3 53e5c523-da96-47c7-a625-dc65b7ab51a0 5e6d441f7e8b26a8de489179a75d1a4f {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.WGS.N C3N-01524 CCRCC WGS blood_normal CPT0077410002 CPT0077410002.WholeGenome.RP-1303.bam 62871277233 BAM submitted_aligned CPTAC3 dc7775fe-9e24-4b58-af4e-4cbddde8dc3e 075999ca436b1a386f1a17fdee4015ac {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01524.WGS.N.hg38 C3N-01524 CCRCC WGS blood_normal CPT0077410002 492c07b1-0c0c-4b13-b2d2-db8a6694d819_gdc_realn.bam 94923448976 BAM harmonized CPTAC3 a6fcae21-45ae-43f6-a546-026ebcfbb1fe c698fd6e7aa290932b48c0c8120021c5 {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01524.WGS.T C3N-01524 CCRCC WGS tumor CPT0077310009 CPT0077310009.WholeGenome.RP-1303.bam 66448595831 BAM submitted_aligned CPTAC3 8472f5f0-a706-48a9-9a17-df3a3bbb2bf1 dbb06bdd7c11691c7111e664cda814ec {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.WGS.T.hg38 C3N-01524 CCRCC WGS tumor CPT0077310009 5e8dd278-8b37-41fa-a827-7f417da498cd_gdc_realn.bam 100101202357 BAM harmonized CPTAC3 35dc1060-2818-46b3-9e62-7b105a2cef0b abe8b0907608c6276baebadfe35b3888 {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.WXS.A C3N-01524 CCRCC WXS tissue_normal CPT0077320009 CPT0077320009.WholeExome.RP-1303.bam 27904957628 BAM submitted_aligned CPTAC3 1da4493a-6d9f-4e13-bbf6-34e8fc6d449f 70158484c8bc66f6c14d8b137acac681 {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.WXS.A.hg38 C3N-01524 CCRCC WXS tissue_normal CPT0077320009 5e4c455f-4a8c-4065-b845-df6d85a8df55_wxs_gdc_realn.bam 37385199539 BAM harmonized CPTAC3 5f7f3caa-8e88-4940-b380-220cd188bc9d dafb75eff0c74a114eb6007c3d6245f6 {"aliquot_tag": "ALQ_522df130", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01524.WXS.N C3N-01524 CCRCC WXS blood_normal CPT0077410002 CPT0077410002.WholeExome.RP-1303.bam 28508864202 BAM submitted_aligned CPTAC3 ccb8c5bc-852c-4154-8bb9-964be4ab8529 9e1ddc8480d1394d4be21788b9f54531 {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01524.WXS.N.hg38 C3N-01524 CCRCC WXS blood_normal CPT0077410002 492c07b1-0c0c-4b13-b2d2-db8a6694d819_gdc_realn.bam 38788722501 BAM harmonized CPTAC3 65168a7a-2fd4-4413-bd46-5753add070d2 38f971bfeb8521c47ad0b8850309f96f {"aliquot_tag": "ALQ_9f5a62d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01524.WXS.T C3N-01524 CCRCC WXS tumor CPT0077310009 CPT0077310009.WholeExome.RP-1303.bam 24779494762 BAM submitted_aligned CPTAC3 f18e2d6f-3786-40b7-ad58-2fe501432dd7 909e6d8652b4758ac91626fd72a65a0e {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01524.WXS.T.hg38 C3N-01524 CCRCC WXS tumor CPT0077310009 5e8dd278-8b37-41fa-a827-7f417da498cd_gdc_realn.bam 34597436053 BAM harmonized CPTAC3 3257506d-9d0c-4517-9c74-e098097b6536 7766b7120908afbaacd922227be0aeaa {"aliquot_tag": "ALQ_158d8be0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01525.DUP_12d1b8af.WXS.T C3N-01525 UCEC WXS tumor CPT0095890076 CPT0095890076.WholeExome.RP-1303.bam 27022501021 BAM submitted_aligned CPTAC3 1248440e-a461-419d-93ca-d1d399692f7f 5e07074be504773ca0370ae3616d7f6a {"aliquot_tag": "DUP_12d1b8af", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_12d1b8af.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890076 f4c2e7b7-08f2-4abc-b52d-4842eaa9e78b_wxs_gdc_realn.bam 37950909774 BAM harmonized CPTAC3 5685bc3b-ecb9-4058-b58a-fe3118e1a5e8 5ef79dfd0cdaba91f4ba9e8413dcf13d {"aliquot_tag": "DUP_12d1b8af", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_15bc7cb6.WXS.T C3N-01525 UCEC WXS tumor CPT0095890072 CPT0095890072.WholeExome.RP-1303.bam 21426214445 BAM submitted_aligned CPTAC3 fe0a0cc2-ce3c-4ab1-82c3-416752063a30 447d1524e445d74f34c42d1f55b64c5e {"aliquot_tag": "DUP_15bc7cb6", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_15bc7cb6.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890072 2117ac73-5586-461d-bb92-d4d586780f0a_wxs_gdc_realn.bam 29268967625 BAM harmonized CPTAC3 020e0007-170f-4c68-ae95-9b9b0826000d 72f28c24cc5ce17be9b6ccb17030a531 {"aliquot_tag": "DUP_15bc7cb6", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_1673489c.WXS.T C3N-01525 UCEC WXS tumor CPT0095870049 CPT0095870049.WholeExome.RP-1303.bam 19488129987 BAM submitted_aligned CPTAC3 f6e72ede-837f-4ff3-9575-2e558fdfafd9 183679f6252b26d9ab6b01f268b309fb {"aliquot_tag": "DUP_1673489c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_1673489c.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870049 7b68fc83-7d8c-4a84-909c-baa1ca390828_wxs_gdc_realn.bam 26791037124 BAM harmonized CPTAC3 1c289884-4bd0-401b-b30e-26ba425bfa17 924ae3083568a7c161b4690e092cab6d {"aliquot_tag": "DUP_1673489c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_1b3f1ef.WXS.T C3N-01525 UCEC WXS tumor CPT0095870051 CPT0095870051.WholeExome.RP-1303.bam 17019942693 BAM submitted_aligned CPTAC3 c2522a71-9fa1-4d64-84dc-be9f1b1b85cd d8424ac307da1b61b4f3379e8e91dfbf {"aliquot_tag": "DUP_1b3f1ef", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_1b3f1ef.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870051 51879f48-43b4-4bb0-9e93-58dc0f9c76bb_wxs_gdc_realn.bam 23603471019 BAM harmonized CPTAC3 116b4c66-10b0-4718-87f0-31c00afb1c85 d424d8c51bb92796d9929d194a16a43b {"aliquot_tag": "DUP_1b3f1ef", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_65d68839.WGS.T C3N-01525 UCEC WGS tumor CPT0095890077 CPT0095890077.WholeGenome.RP-2158.bam 36327290039 BAM submitted_aligned CPTAC3 32ca4cbb-4449-44fe-b140-ab93a8f124a3 1cedb0cda2516f11945ea45a8ec64ce6 {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_65d68839.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890077 a0a8413c-e99e-4913-97f2-bbfd8e059eac_wgs_gdc_realn.bam 107659002653 BAM harmonized CPTAC3 ba9bfacd-e671-4d39-92bb-aa9dbc1a306e b84dcbd5f30279fd651159842b341c00 {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_65d68839.WXS.T C3N-01525 UCEC WXS tumor CPT0095890077 CPT0095890077.WholeExome.RP-1303.bam 23446043722 BAM submitted_aligned CPTAC3 82102bee-764b-4a07-9824-93425c1acb43 924c2fc6028ae7899db1c05bdd800a16 {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_65d68839.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890077 a0a8413c-e99e-4913-97f2-bbfd8e059eac_wxs_gdc_realn.bam 32264744686 BAM harmonized CPTAC3 4b5fb1dc-7cfe-4b5b-9194-c71eea8c2129 76ff92b890cd42ed82a04aee89c7044f {"aliquot_tag": "DUP_65d68839", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_86cc550d.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.chimeric.gdc_realn.bam 129831164 BAM chimeric harmonized CPTAC3 578ec35f-b113-4290-95b8-4499f194ccc2 399943a82f19dbdc521804fc0e80ae03 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_86cc550d.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.genomic.gdc_realn.bam 8732983752 BAM genomic harmonized CPTAC3 cbec2155-f475-4d39-b5c2-e28c797d190b 77726a525f5bc09ccbd1a45540b47cb8 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_86cc550d.RNA-Seq.S7_L002_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R1_001.fastq.gz 3529331134 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 9fa3175c-9bb4-4dda-adba-95a01bf8173e c45541178d2f3a18221bf30166a28fde {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_86cc550d.RNA-Seq.S7_L002_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R2_001.fastq.gz 3841105305 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 77fc7ff3-05e0-4893-a795-e691b77d746b 7139602946c1f6f8e2c8b25331ddf375 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_86cc550d.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.transcriptome.gdc_realn.bam 2705133091 BAM transcriptome harmonized CPTAC3 2265916e-fe83-410e-b1d1-bcb7f924ca34 6ea6ffba815af286e7fa7d3057d28fd2 {"aliquot_tag": "DUP_86cc550d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_8bd8e915.WXS.T C3N-01525 UCEC WXS tumor CPT0095890075 CPT0095890075.WholeExome.RP-1303.bam 26480060080 BAM submitted_aligned CPTAC3 d1702bbe-9ae5-41f1-9043-17337ad9b89e 1f354041484648271637997b0c0b0368 {"aliquot_tag": "DUP_8bd8e915", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_8bd8e915.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890075 dd2dacf0-bf50-42ce-acf7-6d2f7f3248b1_wxs_gdc_realn.bam 36714646517 BAM harmonized CPTAC3 bca2179e-c656-47a8-8ee6-b48390538b46 edfa01dd0999a1da6de4830eccbb692c {"aliquot_tag": "DUP_8bd8e915", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_92c3d854.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.chimeric.gdc_realn.bam 186727152 BAM chimeric harmonized CPTAC3 9a18ee9e-6fc7-405d-aa5c-1d6988980234 48d849917a899e3354f1d0b8b17244b0 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_92c3d854.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.genomic.gdc_realn.bam 7431541643 BAM genomic harmonized CPTAC3 6201e2cf-3016-4244-8e98-3e86f62667aa ba9065d2e378b5f99f825d8187e32a59 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_92c3d854.RNA-Seq.S10_L003_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R1_001.fastq.gz 3146864941 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 45bb7f89-e151-4eda-a814-544c0fd0549c 4ee7e01c9957485e2b20c597eb1cdcbf {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_92c3d854.RNA-Seq.S10_L003_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R2_001.fastq.gz 3493627102 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 795da625-4686-4f20-ba6c-313b56083ebc dcad7c01e5ea17fb65435c4a516ce422 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_92c3d854.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.transcriptome.gdc_realn.bam 5736426442 BAM transcriptome harmonized CPTAC3 a39db008-d470-422a-9dc6-550cd5a9bfc4 422792d35e5f6ed25040f1006a7995b6 {"aliquot_tag": "DUP_92c3d854", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_98baa055.WXS.T C3N-01525 UCEC WXS tumor CPT0095870052 CPT0095870052.WholeExome.RP-1303.bam 21791915492 BAM submitted_aligned CPTAC3 415658f6-8f36-4d3d-9990-7fe5a7167635 d961308def9c767931fac91e5fbf0f3e {"aliquot_tag": "DUP_98baa055", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_98baa055.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870052 24b02a9f-2789-4007-a627-7d1790062aa2_wxs_gdc_realn.bam 29891291715 BAM harmonized CPTAC3 5fbca83b-75e5-486f-8c72-17d72092cf20 29b94b7fee13e2cfe84cf33c628c2baf {"aliquot_tag": "DUP_98baa055", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_b058c7bc.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.chimeric.gdc_realn.bam 144239742 BAM chimeric harmonized CPTAC3 55192e90-fb6f-4611-b41f-b5d960b91d07 1095b2879b737367c409c0f223012088 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_b058c7bc.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.genomic.gdc_realn.bam 8799061097 BAM genomic harmonized CPTAC3 74429a0d-ad0f-41e2-aa71-62be18c994f7 83f2be064ed3e79f777f4b1d6c7d1446 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_b058c7bc.RNA-Seq.S8_L003_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R1_001.fastq.gz 3907360321 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 1e3ad2be-2624-4e61-b8c3-931c8dca073b 1ec1d3c5e1b433299c606c8d220ce065 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_b058c7bc.RNA-Seq.S8_L003_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R2_001.fastq.gz 4336799956 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 8e95d8e9-59b6-4d1a-9210-4056896e3e03 49da2981cbca809be2e8adeba7a0c92a {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_b058c7bc.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.transcriptome.gdc_realn.bam 7119069658 BAM transcriptome harmonized CPTAC3 b790e519-732f-41ed-a455-2dfcb652fff8 92031817c42ea150063e2358eb1af3a0 {"aliquot_tag": "DUP_b058c7bc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_ca74df7.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.chimeric.gdc_realn.bam 151518130 BAM chimeric harmonized CPTAC3 31c245f5-6916-4733-a6dc-a833d946c171 3ee5fb7ecdaee1a9261c331d214b0595 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_ca74df7.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.genomic.gdc_realn.bam 9006773662 BAM genomic harmonized CPTAC3 33243fa1-9041-4d28-83ce-e81ad950dc7b 2bd08b8291946488e5b851ecec142c68 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_ca74df7.RNA-Seq.S9_L003_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R1_001.fastq.gz 3712958149 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 3b7b0a34-b123-419b-9ac2-5565acc07871 0ef021b0c079535ff65e8030a5122111 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_ca74df7.RNA-Seq.S9_L003_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R2_001.fastq.gz 4058507606 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 f2551767-5466-4543-8dca-29bd5fac5227 558414e7a2f826d7588fedd4604f4e42 {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_ca74df7.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.transcriptome.gdc_realn.bam 5229709088 BAM transcriptome harmonized CPTAC3 8938f76d-7ce4-4dc7-b6b7-0bed77a9366b 1b34a8194e4129c30f8bb25b31108aaa {"aliquot_tag": "DUP_ca74df7", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_efbd90c3.WXS.T C3N-01525 UCEC WXS tumor CPT0095870053 CPT0095870053.WholeExome.RP-1303.bam 16912365183 BAM submitted_aligned CPTAC3 0b5550f1-4829-487d-8cb3-bbf13008dc5b dea42f64c6cb77ce4850831f539ada21 {"aliquot_tag": "DUP_efbd90c3", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_efbd90c3.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870053 2144d11e-2194-494d-8354-e5014f9ec937_wxs_gdc_realn.bam 23224598583 BAM harmonized CPTAC3 52d88fe4-04b8-43bb-b4d6-8d5056b2e015 edc54281ed972f2ceb53c2b5d679c88d {"aliquot_tag": "DUP_efbd90c3", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_f6a6a182.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.chimeric.gdc_realn.bam 90013996 BAM chimeric harmonized CPTAC3 43203b7a-d562-4a08-83b5-172d7d52c8d2 27d839f89ec28ade9fd89563c5443205 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_f6a6a182.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.genomic.gdc_realn.bam 8719173405 BAM genomic harmonized CPTAC3 b597082a-dcca-4d3a-8968-f5cc4c1f505f 2f9107cc861d90a6cd593097fdb66739 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_f6a6a182.RNA-Seq.S6_L002_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R1_001.fastq.gz 3585068661 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 4adddeac-120c-4141-a6f4-b05e33665f70 43ff86c137d00a9976e28006b10bd981 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_f6a6a182.RNA-Seq.S6_L002_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R2_001.fastq.gz 3987437061 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 75a7a693-b6db-4d1a-8ac8-878278053533 d42865f60f98c1d600ef8cf7901f82ed {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_f6a6a182.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.transcriptome.gdc_realn.bam 4964978370 BAM transcriptome harmonized CPTAC3 18b45c89-ad9c-4d6d-81d7-eb71f7b233d2 49e69519b448c656b137e93ece6154e9 {"aliquot_tag": "DUP_f6a6a182", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fbb21d9a.WGS.T C3N-01525 UCEC WGS tumor CPT0095890070 CPT0095890070.WholeGenome.RP-2158.bam 28398963253 BAM submitted_aligned CPTAC3 09d8902f-682a-4991-b0e1-621ec52bed2e 8bf2fd7f96ff96d49ded6e35d3fba41d {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fbb21d9a.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890070 ae065acd-6d37-4cce-9711-f1f08861cd33_wgs_gdc_realn.bam 84193932648 BAM harmonized CPTAC3 2cc1e692-94b8-45a2-a8a0-cd2c311800e6 229e2f81ba36be29aaeb764db0f62139 {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fbb21d9a.WXS.T C3N-01525 UCEC WXS tumor CPT0095890070 CPT0095890070.WholeExome.RP-1303.bam 19159112452 BAM submitted_aligned CPTAC3 6275b4ea-7303-474d-b2ff-688ff0ddc0dd 035c1c2e058694fa1f51862fecb56ee7 {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fbb21d9a.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890070 ae065acd-6d37-4cce-9711-f1f08861cd33_wxs_gdc_realn.bam 26973505169 BAM harmonized CPTAC3 a807d6fa-9051-4ecb-8530-55ac4132b176 895766006c63931e5c75a05cb73c7ba0 {"aliquot_tag": "DUP_fbb21d9a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fcdfd983.WGS.T C3N-01525 UCEC WGS tumor CPT0095890074 CPT0095890074.WholeGenome.RP-2158.bam 31754941052 BAM submitted_aligned CPTAC3 ee144f84-bd39-4d5a-a407-98418cc058cf cd229273c086d815d193408b4758e539 {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fcdfd983.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890074 40060511-6d67-4a8a-a00f-9eac7a9c5162_wgs_gdc_realn.bam 94125675917 BAM harmonized CPTAC3 409cee47-278c-4d2e-bbd7-66e1070f883c 56d428a44879fdf1801701c2b819af3b {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fcdfd983.WXS.T C3N-01525 UCEC WXS tumor CPT0095890074 CPT0095890074.WholeExome.RP-1303.bam 20732270877 BAM submitted_aligned CPTAC3 15b499c5-49dd-41b6-b15d-542b4646e6dc 30d865ccf17da7ab5711fdbd2e53f4a9 {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.DUP_fcdfd983.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890074 40060511-6d67-4a8a-a00f-9eac7a9c5162_wxs_gdc_realn.bam 28379074189 BAM harmonized CPTAC3 09a58bd7-4e93-4fa0-a069-fa53dd0110b7 4740d43befddcf5361722a5db1ecaf4b {"aliquot_tag": "DUP_fcdfd983", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.MethArray.Green.T C3N-01525 UCEC Methylation_Array tumor CPT0095880009 202234380058_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 68dca642-1c48-462e-82c7-4a99fe470bdb 30961ecb851ac4b9cb4c1b94dea3a792 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.MethArray.Red.T C3N-01525 UCEC Methylation_Array tumor CPT0095880009 202234380058_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 b1d8a7ef-df8a-407b-bc32-568c80877569 c9eafed1fadbd8c61ebe01d20991e88a {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.miRNA-Seq.A.hg38 C3N-01525 UCEC miRNA-Seq tissue_normal CPT0095900009 e25c0ecf-b634-4ae0-b11d-64ef7250f215_mirnaseq_gdc_realn.bam 320603950 BAM harmonized CPTAC3 87e5eb1a-e437-44ba-a1b4-0de6f8342c0f 6f8d832fa3190a2138a680ec530c8ae6 {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.miRNA-Seq.S12_L005_R1.A C3N-01525 UCEC miRNA-Seq tissue_normal CPT0095900009 181113_UNC31-K00269_0164_AH23NNBBXY_CCAACA_S12_L005_R1_001.unaln.bam 285208232 BAM S12_L005_R1 submitted_unaligned CPTAC3 0d977c17-0e4c-4cf3-b803-cafa447165d4 e365cb60b23bd9d2e596db90adb167f8 {"aliquot_tag": "ALQ_b63822d", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.miRNA-Seq.S21_L008_R1.T C3N-01525 UCEC miRNA-Seq tumor CPT0095880006 181108_UNC31-K00269_0163_BH23TVBBXY_GTTTCG_S21_L008_R1_001.unaln.bam 203340092 BAM S21_L008_R1 submitted_unaligned CPTAC3 03688d58-6cf8-4e67-8f32-63265f9878ec d42a1f8f53b7f5d6d862804a9f5d46b9 {"aliquot_tag": "ALQ_60f007d8", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.miRNA-Seq.T.hg38 C3N-01525 UCEC miRNA-Seq tumor CPT0095880006 b8288b74-d636-485b-ace0-684bc83b8175_mirnaseq_gdc_realn.bam 225028917 BAM harmonized CPTAC3 1726a0d7-0c4b-4f15-9d7c-372edf2e73d8 9134e53d4901af10d5919e1acf909a8d {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.chimeric.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.chimeric.gdc_realn.bam 31303373 BAM chimeric harmonized CPTAC3 87c3cad8-ac89-48f5-86a0-c42e66966751 144245516a0a54a0319afe87a88a2ed7 {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.chimeric.gdc_realn.bam 71991431 BAM chimeric harmonized CPTAC3 26d3dc7c-a2ec-4fd4-9db0-6a63c381e6be 290dffdab3c5b49b641c68cf16fdd3e1 {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.chimeric.gdc_realn.bam 139842204 BAM chimeric harmonized CPTAC3 bd05e96b-d9ef-4425-9806-91a9bb364854 0496f7a18b286fdcd6c7dfb69da178b8 {"aliquot_tag": "ALQ_35c841de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.genomic.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.genomic.gdc_realn.bam 9244695401 BAM genomic harmonized CPTAC3 c77de9e0-ab02-4aa5-b99e-c6ffdcda35ba 8788e53f1ebedbc6b14773db04c2f228 {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.genomic.gdc_realn.bam 8611960259 BAM genomic harmonized CPTAC3 a6a086ee-2ea1-4e8d-b990-0cf2af6b03aa ab652e892ce9a787b59349276e35b0fd {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.genomic.gdc_realn.bam 10033705698 BAM genomic harmonized CPTAC3 b05a6b36-5837-4dfd-b5a4-e58900f0107c 3f50417244d46aa534c845fc94d86fb9 {"aliquot_tag": "ALQ_35c841de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.S21_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R1_001.fastq.gz 5637990199 FASTQ S21_R1 submitted_unaligned CPTAC3 a1451b01-248c-4285-963e-16c135adf598 81d3a64eac7d65b95b8c1cb079c97310 {"aliquot_tag": "ALQ_35c841de", "sample": "S21", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.S21_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R2_001.fastq.gz 5904919547 FASTQ S21_R2 submitted_unaligned CPTAC3 cb9b077f-8845-4efd-95a9-70b814ca2b7e e03568454399523eab470530ec38a015 {"aliquot_tag": "ALQ_35c841de", "sample": "S21", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.S27_L007_R1.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R1_001.fastq.gz 3801524004 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 60d4d2d6-e06e-4e47-8114-072fabb42fd6 622598c17fbf66de8eece500c710a54a {"aliquot_tag": "ALQ_b63822d", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.RNA-Seq.S27_L007_R2.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R2_001.fastq.gz 4006838452 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 b1878470-eeb5-4cd8-b802-ee18ced97730 29d47df9f015f40fd11c32faebba4bb7 {"aliquot_tag": "ALQ_b63822d", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.RNA-Seq.S63_L008_R1.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R1_001.fastq.gz 3760186423 FASTQ S63_L008_R1 submitted_unaligned CPTAC3 ea3cf705-6b2f-4777-8911-7348e171ab00 282045f8c42e0c03ee2cf1e99f72dc34 {"aliquot_tag": "ALQ_60f007d8", "sample": "S63", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.S63_L008_R2.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R2_001.fastq.gz 4053079023 FASTQ S63_L008_R2 submitted_unaligned CPTAC3 8a9c0d57-959d-4c5f-b922-750d72b0c8d5 17fe8b43bc6e8bcdad8c1aa45b3f9d0c {"aliquot_tag": "ALQ_60f007d8", "sample": "S63", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.transcriptome.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.transcriptome.gdc_realn.bam 10980079599 BAM transcriptome harmonized CPTAC3 ff73f225-5935-41a1-b3b1-0debffcaaf5d 4685d3b4e3d0e200ab38dd600a3326db {"aliquot_tag": "ALQ_b63822d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.transcriptome.gdc_realn.bam 8550228516 BAM transcriptome harmonized CPTAC3 b25ace4e-2b58-428f-90c6-a0416606ea55 6d67decd2a836aa9693789b10133a0a1 {"aliquot_tag": "ALQ_60f007d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.transcriptome.gdc_realn.bam 5540806729 BAM transcriptome harmonized CPTAC3 d7763eb4-536c-4dc7-a93a-8ac549ebdbf9 eb30c2201035ed03082930b2759a4c76 {"aliquot_tag": "ALQ_35c841de", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.WGS.A C3N-01525 UCEC WGS tissue_normal CPT0095900006 CPT0095900006.WholeGenome.RP-1303.bam 66675489743 BAM submitted_aligned CPTAC3 6fb78171-6661-48a1-b884-0dd47659cc23 7121cd62b1244f18f7e24b362ad41a8a {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.WGS.A.hg38 C3N-01525 UCEC WGS tissue_normal CPT0095900006 6636828c-15a6-483d-ade1-0d697874131a_wgs_gdc_realn.bam 98443324645 BAM harmonized CPTAC3 d282953d-5e60-457c-966c-f6233255e43f 37eeae0780cdba41710668339661f68a {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.WGS.N C3N-01525 UCEC WGS blood_normal CPT0095910002 CPT0095910002.WholeGenome.RP-1303.bam 69965816220 BAM submitted_aligned CPTAC3 afd2f3d9-9105-40f1-8fd0-0e1ed412a2bb 9b937f0790777358f13d69ad9f580460 {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01525.WGS.N.hg38 C3N-01525 UCEC WGS blood_normal CPT0095910002 983de87d-c165-48e5-963d-970fad538bf7_wgs_gdc_realn.bam 103028139543 BAM harmonized CPTAC3 a12a0859-002e-47f5-869f-240c8964517c 04900f45832d9325314df04e60b3bca6 {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01525.WGS.T C3N-01525 UCEC WGS tumor CPT0095880009 CPT0095880009.WholeGenome.RP-1303.bam 75189427081 BAM submitted_aligned CPTAC3 c42cf6df-dd58-424b-b429-cd07fdf062bf 4defae3ef6f7a703d7f75c4a08e721a9 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095880009 8f21acac-0d82-485f-8eb5-072a6e2a866b_wgs_gdc_realn.bam 108433341840 BAM harmonized CPTAC3 20b38ee9-5582-478e-8305-db960a2f88e7 1326e0c18d19d8fa5a91e7cf57908773 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.WXS.A C3N-01525 UCEC WXS tissue_normal CPT0095900006 CPT0095900006.WholeExome.RP-1303.bam 30231434427 BAM submitted_aligned CPTAC3 aee8b25f-05d7-4c3b-a4ab-5d4568d05b85 12f20d850c5384ad4cd1ca807d29827d {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.WXS.A.hg38 C3N-01525 UCEC WXS tissue_normal CPT0095900006 6636828c-15a6-483d-ade1-0d697874131a_wxs_gdc_realn.bam 40245771429 BAM harmonized CPTAC3 7c2c92e2-d2b0-4f69-963e-ae300f46ba45 f1143a04ac84c371d41acb0d96864609 {"aliquot_tag": "ALQ_9bdc9fbc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01525.WXS.N C3N-01525 UCEC WXS blood_normal CPT0095910002 CPT0095910002.WholeExome.RP-1303.bam 26561618983 BAM submitted_aligned CPTAC3 f5c4cc58-63fd-472e-ac7f-fe2814242bda a0b7363e288464b0ee2bac0ced45ea0c {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01525.WXS.N.hg38 C3N-01525 UCEC WXS blood_normal CPT0095910002 983de87d-c165-48e5-963d-970fad538bf7_wxs_gdc_realn.bam 36184960828 BAM harmonized CPTAC3 54e3c9e5-a839-4c25-85ef-9520c184c0da eda17b99583a2c47fb4d386a73ac8845 {"aliquot_tag": "ALQ_a1d17215", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01525.WXS.T C3N-01525 UCEC WXS tumor CPT0095880009 CPT0095880009.WholeExome.RP-1303.bam 37250048620 BAM submitted_aligned CPTAC3 27f969ab-576c-48aa-b395-e97da4be6de3 b199366010083a4d8692b41a45dd90e3 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01525.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095880009 8f21acac-0d82-485f-8eb5-072a6e2a866b_wxs_gdc_realn.bam 51857851993 BAM harmonized CPTAC3 ce3160d2-cfc6-430e-b141-c931891de669 70ccc1713f3a46ef8c0274122e630c68 {"aliquot_tag": "ALQ_f04f1a49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.MethArray.Green.T C3N-01526 UCEC Methylation_Array tumor CPT0096010009 202234370093_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bf513f79-a95a-4dd3-98b1-49e1c945732c 1a019cf03595ace7afd874a92ad7ebc4 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.MethArray.Red.T C3N-01526 UCEC Methylation_Array tumor CPT0096010009 202234370093_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 cbc5c6f1-a129-4355-8d30-148454a70b15 bc0fe013aa60f1a56f889088edd6f6a0 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.miRNA-Seq.A.hg38 C3N-01526 UCEC miRNA-Seq tissue_normal CPT0096040009 675a502d-a9db-421e-975e-d74e2c9fe707_mirnaseq_gdc_realn.bam 337801643 BAM harmonized CPTAC3 d3d8d935-1589-4ce2-896f-2db41c90b8d4 6e562994dab6a074f2af1f94bac6d3c6 {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.miRNA-Seq.S13_L005_R1.A C3N-01526 UCEC miRNA-Seq tissue_normal CPT0096040009 181113_UNC31-K00269_0164_AH23NNBBXY_CGGAAT_S13_L005_R1_001.unaln.bam 291738050 BAM S13_L005_R1 submitted_unaligned CPTAC3 ceca221e-31fa-4e42-9e08-b3af94a039ea 66571a7b1d05aa2cbc0609b2170bc761 {"aliquot_tag": "ALQ_e8046fb8", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.miRNA-Seq.S22_L008_R1.T C3N-01526 UCEC miRNA-Seq tumor CPT0096010006 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L008_R1_001.unaln.bam 158220765 BAM S22_L008_R1 submitted_unaligned CPTAC3 c6da161a-80e7-4f9c-a93b-d734f606a82b 88e0435bf0d2df805d3214898c82857a {"aliquot_tag": "ALQ_b05bfd59", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.miRNA-Seq.T.hg38 C3N-01526 UCEC miRNA-Seq tumor CPT0096010006 c6a5b694-d9bf-4797-98b7-219e0aa6668a_mirnaseq_gdc_realn.bam 172486611 BAM harmonized CPTAC3 db6edaf4-8231-416e-9609-0721677350a3 4253814aa7ce611a4c13302b4ff75441 {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.chimeric.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.chimeric.gdc_realn.bam 23230743 BAM chimeric harmonized CPTAC3 4fc45de2-a0ef-4c65-8c55-8598089fb7b3 c304074b4362a666c1719f17b98cba10 {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.RNA-Seq.chimeric.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.chimeric.gdc_realn.bam 75737232 BAM chimeric harmonized CPTAC3 659971ce-8e2b-4464-98a6-ec5d2cb60a1b 1c674db876fe46cbd39fa97c486a47af {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.chimeric.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.chimeric.gdc_realn.bam 354037650 BAM chimeric harmonized CPTAC3 67e30fae-afd2-496e-8ddc-19a2406505cf ab9735e89d25258882682fa663a7a189 {"aliquot_tag": "ALQ_e563bb5f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.genomic.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.genomic.gdc_realn.bam 10945318530 BAM genomic harmonized CPTAC3 3d4616e6-c393-44c1-882d-642242becc79 0b7b6ad2ab8451f2f6a76240c091540f {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.RNA-Seq.genomic.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.genomic.gdc_realn.bam 8481269034 BAM genomic harmonized CPTAC3 957285e7-59ea-4809-a6f2-5fa57e44c2b7 b3544f54fa1f54f5895c69ba6927d05c {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.genomic.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.genomic.gdc_realn.bam 16229256111 BAM genomic harmonized CPTAC3 9fe5990b-6460-4e3d-a966-98a6014ccab1 bbf7181fe704077f09c5ddb35ffe3454 {"aliquot_tag": "ALQ_e563bb5f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.S22_L006_R1.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 3643577017 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 0c29467b-acde-475c-a5ff-55a1d8dac7ea 6fc30101a2f39c4a2182a607ef6d5e37 {"aliquot_tag": "ALQ_e8046fb8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.RNA-Seq.S22_L006_R2.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 3895644250 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 00710e15-20d7-48b0-a6dd-3d43506fdd63 90187447d72960bd70ee7e04e7228285 {"aliquot_tag": "ALQ_e8046fb8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.RNA-Seq.S39_R1.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R1_001.fastq.gz 9537553949 FASTQ S39_R1 submitted_unaligned CPTAC3 cfdc8516-703e-459c-a2ce-ceae446125be a28d9e28e3c8d8bc4d2bd84797e4bd08 {"aliquot_tag": "ALQ_e563bb5f", "sample": "S39", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.S39_R2.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R2_001.fastq.gz 9925497092 FASTQ S39_R2 submitted_unaligned CPTAC3 1c4995ac-2e52-47bc-8896-9ec45e4ce331 3680e26a1b76a59749ec5649bc74b9c5 {"aliquot_tag": "ALQ_e563bb5f", "sample": "S39", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.S65_L008_R1.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R1_001.fastq.gz 4256256205 FASTQ S65_L008_R1 submitted_unaligned CPTAC3 8578f4e1-2cd8-485a-802a-4bc4c087ba62 f29a6246992383a8f6bd51814309408c {"aliquot_tag": "ALQ_b05bfd59", "sample": "S65", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.S65_L008_R2.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R2_001.fastq.gz 4462628347 FASTQ S65_L008_R2 submitted_unaligned CPTAC3 c2f960a7-f449-4c54-a4b4-1d25e49ed1f2 314445a4eb8889167e73242e24e131e7 {"aliquot_tag": "ALQ_b05bfd59", "sample": "S65", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.transcriptome.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.transcriptome.gdc_realn.bam 10607416640 BAM transcriptome harmonized CPTAC3 08eb6ff2-4a6d-49f4-b976-1a5edb297d1d aca4fb00222c6d1c20764f1c57b24b21 {"aliquot_tag": "ALQ_e8046fb8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.RNA-Seq.transcriptome.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.transcriptome.gdc_realn.bam 10103139315 BAM transcriptome harmonized CPTAC3 40a6261e-5538-4cc2-8b39-e0c21c435365 86ce6a690effdacae316f120e18a2ad9 {"aliquot_tag": "ALQ_b05bfd59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.RNA-Seq.transcriptome.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.transcriptome.gdc_realn.bam 8484050950 BAM transcriptome harmonized CPTAC3 f5f809ec-b84f-4d54-a559-90d423087240 1b4f5338f2b10a261b42baf7fed72051 {"aliquot_tag": "ALQ_e563bb5f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.WGS.A C3N-01526 UCEC WGS tissue_normal CPT0096040006 CPT0096040006.WholeGenome.RP-1303.bam 61802213737 BAM submitted_aligned CPTAC3 9be73bc2-7368-444f-a494-c67f3d48b88a 1bcd28d179f82338ef4070ad902f6927 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.WGS.A.hg38 C3N-01526 UCEC WGS tissue_normal CPT0096040006 8b96444c-9b82-4d36-aaa3-09c03a0e72f3_wgs_gdc_realn.bam 88796923552 BAM harmonized CPTAC3 a4db60e3-b255-434b-b7fb-5e206b67d60c 6b0d516e0ba495821198867b91d66a08 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.WGS.N C3N-01526 UCEC WGS blood_normal CPT0096050002 CPT0096050002.WholeGenome.RP-1303.bam 55158001907 BAM submitted_aligned CPTAC3 04ef166e-c2f5-4741-8979-e00a95e35479 0b0743fbd33136ebb71c1b1376a35514 {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01526.WGS.N.hg38 C3N-01526 UCEC WGS blood_normal CPT0096050002 4b7869c4-9fe6-44b4-a679-433417679ee9_wgs_gdc_realn.bam 79847900603 BAM harmonized CPTAC3 9c10e788-99e6-44e1-96f7-7ec4f126c6b0 97c6826c26dc9bb18018bf50ea7be6c5 {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01526.WGS.T C3N-01526 UCEC WGS tumor CPT0096010009 CPT0096010009.WholeGenome.RP-1303.bam 64637314489 BAM submitted_aligned CPTAC3 80436414-c559-4afa-98c7-9da32695551f acc0529df6d836d27319cf78ae794713 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.WGS.T.hg38 C3N-01526 UCEC WGS tumor CPT0096010009 fc290422-a284-4bc5-b7aa-bf50020b1109_wgs_gdc_realn.bam 95298152978 BAM harmonized CPTAC3 f44eed9a-be64-491b-86ec-34b2ca2d0f11 670ef6162ec97996000ea286db2a6cc4 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.WXS.A C3N-01526 UCEC WXS tissue_normal CPT0096040006 CPT0096040006.WholeExome.RP-1303.bam 41648050466 BAM submitted_aligned CPTAC3 c39b3dac-20c4-4308-be7e-97a142ccd629 350671c11432dd30456b7a90011ea130 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.WXS.A.hg38 C3N-01526 UCEC WXS tissue_normal CPT0096040006 8b96444c-9b82-4d36-aaa3-09c03a0e72f3_wxs_gdc_realn.bam 57336503999 BAM harmonized CPTAC3 9b2f3612-8a93-4b13-a359-b2fb5b271a2e ff091aadde5d52a8b078fe7813ce3057 {"aliquot_tag": "ALQ_78bb7229", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01526.WXS.N C3N-01526 UCEC WXS blood_normal CPT0096050002 CPT0096050002.WholeExome.RP-1303.bam 30348662295 BAM submitted_aligned CPTAC3 02d38ae2-8a45-43f7-a6f0-5e7b0c338cb6 c6123317069a538a716bdef9e3e91181 {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01526.WXS.N.hg38 C3N-01526 UCEC WXS blood_normal CPT0096050002 4b7869c4-9fe6-44b4-a679-433417679ee9_wxs_gdc_realn.bam 42058061742 BAM harmonized CPTAC3 60feffa9-8041-4475-b79d-790c49b0942b ad0cd18c855fa8678214f1d66287cf3e {"aliquot_tag": "ALQ_42b69f80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01526.WXS.T C3N-01526 UCEC WXS tumor CPT0096010009 CPT0096010009.WholeExome.RP-1303.bam 41693145058 BAM submitted_aligned CPTAC3 5142c326-ede8-4a50-8cb6-077d5228e55c b82796f18509a7a697f20533f4f1c230 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01526.WXS.T.hg38 C3N-01526 UCEC WXS tumor CPT0096010009 fc290422-a284-4bc5-b7aa-bf50020b1109_wxs_gdc_realn.bam 57408159726 BAM harmonized CPTAC3 0b03531c-76dd-4e1e-a0c7-20727c66203d 9ff3898c0e203f08c704cc9efa8da3c7 {"aliquot_tag": "ALQ_20e4e0c8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.MethArray.Green.T C3N-01529 UCEC Methylation_Array tumor CPT0097440009 202234370095_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 ef2e6c0e-fba1-4fe8-80d5-fb2cb19e3b09 50f9c556218414e9749f0419ab8439fd {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.MethArray.Red.T C3N-01529 UCEC Methylation_Array tumor CPT0097440009 202234370095_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 457401a6-7b53-44f7-ab10-ef18c5d10dfa a045faedf3947e37c98ca295d0af43dc {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.miRNA-Seq.S23_L008_R1.T C3N-01529 UCEC miRNA-Seq tumor CPT0097440006 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L008_R1_001.unaln.bam 165082438 BAM S23_L008_R1 submitted_unaligned CPTAC3 2330acc0-16a7-43e3-99a5-d942757c295a a23deb8cb6e0a7a4736381a16ac25b77 {"aliquot_tag": "ALQ_455d3b8b", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.miRNA-Seq.T.hg38 C3N-01529 UCEC miRNA-Seq tumor CPT0097440006 52451cb0-9737-48ab-8b90-d8170421b021_mirnaseq_gdc_realn.bam 183330653 BAM harmonized CPTAC3 6489527b-b5ff-4f70-ac8b-453a354db5fa 19f612c600f9a062632ef982f4283efd {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.chimeric.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.chimeric.gdc_realn.bam 75940792 BAM chimeric harmonized CPTAC3 25d0d10c-7eb8-42a4-a7c5-64c9a55b065c a6af1c077f37b509e1a1ebc2ba3198be {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.chimeric.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.chimeric.gdc_realn.bam 221228530 BAM chimeric harmonized CPTAC3 105acb6f-ae3b-45fe-8f5e-90a3a8d72bb7 4a7c8926f56139aa07abf2a871a13717 {"aliquot_tag": "ALQ_10657d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.genomic.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.genomic.gdc_realn.bam 7758723413 BAM genomic harmonized CPTAC3 1271be93-0e7b-4b2c-b92f-a3619ab8d7e9 168a3836f940236b54343e17692981a3 {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.genomic.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.genomic.gdc_realn.bam 10298801408 BAM genomic harmonized CPTAC3 4ef5adfa-fbad-4923-95f6-5da8b53ceac3 ee02f2b0089a9a6dfa64736df3d2edbd {"aliquot_tag": "ALQ_10657d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.S15_R1.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R1_001.fastq.gz 6414094236 FASTQ S15_R1 submitted_unaligned CPTAC3 72c35a6f-3f72-4362-8596-1093fafbd01b d6495e5c6134b6b35f2c23a7a0f5ff89 {"aliquot_tag": "ALQ_10657d8d", "sample": "S15", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.S15_R2.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R2_001.fastq.gz 6567530947 FASTQ S15_R2 submitted_unaligned CPTAC3 970ae1ae-cd05-498e-bb9b-40f4b574d5bb 4e35e73bd007a6b2bce5b1cbdc16ba08 {"aliquot_tag": "ALQ_10657d8d", "sample": "S15", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.S55_L007_R1.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R1_001.fastq.gz 3757630695 FASTQ S55_L007_R1 submitted_unaligned CPTAC3 0e6df3cf-f883-4b5f-9d7b-2bc837a601d6 85de2f6276e633d0805aa26c9a432818 {"aliquot_tag": "ALQ_455d3b8b", "sample": "S55", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.S55_L007_R2.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R2_001.fastq.gz 4009823687 FASTQ S55_L007_R2 submitted_unaligned CPTAC3 0ca2762c-1af8-4387-8b4a-1b32e58a6430 c9ac2a268e0975ea277234fa63e24aed {"aliquot_tag": "ALQ_455d3b8b", "sample": "S55", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.transcriptome.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.transcriptome.gdc_realn.bam 7763166968 BAM transcriptome harmonized CPTAC3 5688a66a-281b-45aa-ad3f-ec9e977fe2e4 6d567b34deab89b49b7bd78d79bda025 {"aliquot_tag": "ALQ_455d3b8b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.RNA-Seq.transcriptome.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.transcriptome.gdc_realn.bam 7306600954 BAM transcriptome harmonized CPTAC3 0de9a0b7-93b0-404c-a740-b7a1b64ee50f 834d4e8146927de84d4e1ec4665f11ec {"aliquot_tag": "ALQ_10657d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.WGS.N C3N-01529 UCEC WGS blood_normal CPT0097470002 CPT0097470002.WholeGenome.RP-1303.bam 51561880329 BAM submitted_aligned CPTAC3 b041aafe-96f0-4ba7-95e1-1e4e1a9eb953 6da440e0e80f3561f278c870474bee02 {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01529.WGS.N.hg38 C3N-01529 UCEC WGS blood_normal CPT0097470002 2d6f437b-7532-4f34-85da-c400876414af_wgs_gdc_realn.bam 75306443453 BAM harmonized CPTAC3 6db3a460-5559-42fa-a749-f662651a4a0e 5b270f1259fbae12470bcc080376a65f {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01529.WGS.T C3N-01529 UCEC WGS tumor CPT0097440009 CPT0097440009.WholeGenome.RP-1303.bam 63236724570 BAM submitted_aligned CPTAC3 ba4eaf41-83eb-41f8-87c8-e163f7c2014f 175d6ef21c91aae1f0e68b9ec04b7b4b {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.WGS.T.hg38 C3N-01529 UCEC WGS tumor CPT0097440009 f5ca6776-3248-415a-86d1-48ec87f211d6_wgs_gdc_realn.bam 91707836189 BAM harmonized CPTAC3 3a5b3098-f05f-4e96-b3e2-5ce6a99e4d59 3f434e206d8d5d3a233b25f5b98d4a47 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.WXS.N C3N-01529 UCEC WXS blood_normal CPT0097470002 CPT0097470002.WholeExome.RP-1303.bam 48255066723 BAM submitted_aligned CPTAC3 8bf32f0e-fb2e-4bd3-a82d-5b6c5c7c2c75 d793fe22382abdd6a73aa8cb7580242f {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01529.WXS.N.hg38 C3N-01529 UCEC WXS blood_normal CPT0097470002 2d6f437b-7532-4f34-85da-c400876414af_wxs_gdc_realn.bam 65690263407 BAM harmonized CPTAC3 e98e0298-2b45-4c60-ae37-fd3d7b29a777 91d34bbae41f8c04d8441535098386a2 {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01529.WXS.T C3N-01529 UCEC WXS tumor CPT0097440009 CPT0097440009.WholeExome.RP-1303.bam 41482211502 BAM submitted_aligned CPTAC3 96fc723e-da7e-4360-9028-100cfbf9af6a 3d5104233cce6bb826b7871a556b2db2 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01529.WXS.T.hg38 C3N-01529 UCEC WXS tumor CPT0097440009 f5ca6776-3248-415a-86d1-48ec87f211d6_wxs_gdc_realn.bam 56483401842 BAM harmonized CPTAC3 91cf1023-d004-44d3-9fde-b9a7615a8aa2 910ac656d80561865706663d20e8de37 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.MethArray.Green.T C3N-01535 SAR Methylation_Array tumor CPT0096740009 202234380069_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 0ba9a00a-a40b-4d19-9761-d7b04c1eb048 f9bb50c3dc006bb73a4a1412437b1eac {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.MethArray.Red.T C3N-01535 SAR Methylation_Array tumor CPT0096740009 202234380069_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 09829546-1d49-40a9-8115-81c5a5d8ae28 981d9abd3b3b0b20788f8c080ee470f4 {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.miRNA-Seq.A.hg38 C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 ade6a093-e55e-488c-bea0-6c4e36d0ee67_mirnaseq_gdc_realn.bam 247358824 BAM harmonized CPTAC3 0d18d188-1158-42b2-b819-ac7b3794c0ca 3c57d1861345e4c2c09493c33116dfe0 {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01535.miRNA-Seq.S12_L001_R1.T C3N-01535 SAR miRNA-Seq tumor CPT0096740013 181113_UNC31-K00269_0164_AH23NNBBXY_CCAACA_S12_L001_R1_001.unaln.bam 267267458 BAM S12_L001_R1 submitted_unaligned CPTAC3 9cbb18e3-8713-4df7-808a-7fb607634d79 2626e08b27ce311d1560ffa039339f9c {"aliquot_tag": "ALQ_ccf875f", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.miRNA-Seq.S46_L002_R1.A C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 181119_UNC31-K00269_0165_AH27WCBBXY_CGTACG_S46_L002_R1_001.unaln.bam 225624841 BAM S46_L002_R1 submitted_unaligned CPTAC3 8b8b9381-56f9-4caf-962a-43dd16dde57c 619564677a70ac3ddac0699061fb0a3b {"aliquot_tag": "ALQ_760fd43f", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01535.miRNA-Seq.T.hg38 C3N-01535 SAR miRNA-Seq tumor CPT0096740013 f7991b35-a91c-4d15-8189-856d0c9e43d3_mirnaseq_gdc_realn.bam 300855156 BAM harmonized CPTAC3 43b30c39-2dd6-4674-8e3c-7eab01e9bb10 0bd2474bb3f21cd9b22c8b3d2c98d783 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.RNA-Seq.chimeric.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.chimeric.gdc_realn.bam 19850821 BAM chimeric harmonized CPTAC3 6f5567d6-baa6-4754-9a26-2719fdf9e4ae 5190962ec18678c4f776299d41c3f698 {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01535.RNA-Seq.chimeric.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.chimeric.gdc_realn.bam 106887677 BAM chimeric harmonized CPTAC3 2fed2f40-f740-41b9-b883-f84ee6b181bc f0fe0c59e2ea414cc6530a2695ace557 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.RNA-Seq.genomic.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.genomic.gdc_realn.bam 9686837419 BAM genomic harmonized CPTAC3 c3bf8e94-f46e-4572-bc32-b3e6e6e3fabd 7a959512a4ad22c1902f88081cb3aae0 {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01535.RNA-Seq.genomic.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.genomic.gdc_realn.bam 8515236795 BAM genomic harmonized CPTAC3 2bca2f29-a340-4dc4-adec-d75abd774a19 919881d8b7a0ac6ea7f99ffcc2feeee6 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.RNA-Seq.S1_L001_R1.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3653410476 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 6b0e8cf9-219e-4301-bb63-379927bf4852 195327ec7d13c98b14560342532a17d6 {"aliquot_tag": "ALQ_ccf875f", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.RNA-Seq.S1_L001_R2.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3990728012 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 8e139d1b-b60c-4ff8-8ea7-6c597fe1e478 b1d83d6c5455e5eea28d0a7a3dd09eeb {"aliquot_tag": "ALQ_ccf875f", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.RNA-Seq.S22_L006_R1.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R1_001.fastq.gz 3818859532 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 77598c2d-fca6-4735-8e13-22554daa653f bcaa858b1e322cfca5292c8ed4a432f4 {"aliquot_tag": "ALQ_760fd43f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01535.RNA-Seq.S22_L006_R2.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R2_001.fastq.gz 4118902029 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 f0c1a7c7-5ff6-4359-8fd0-3a4238e91ec2 028d198c9f7f0c415f6380eecf0030ee {"aliquot_tag": "ALQ_760fd43f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01535.RNA-Seq.transcriptome.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.transcriptome.gdc_realn.bam 11539693728 BAM transcriptome harmonized CPTAC3 04120d9c-b75a-4473-ae43-3862a185ee16 af9f89b281e88cf009d6a731b098364e {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01535.RNA-Seq.transcriptome.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.transcriptome.gdc_realn.bam 11391299524 BAM transcriptome harmonized CPTAC3 21e95235-9895-40e1-888e-3de999e6cec0 c65b8a16a801cd5e68539233a1a97258 {"aliquot_tag": "ALQ_ccf875f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.WGS.N C3N-01535 SAR WGS blood_normal CPT0096770002 CPT0096770002.WholeGenome.RP-1303.bam 70043643540 BAM submitted_aligned CPTAC3 961023a0-4be9-49f1-86c1-1fbaf9419bb4 6a4e9241011a413aaf67208d77dad2c7 {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01535.WGS.N.hg38 C3N-01535 SAR WGS blood_normal CPT0096770002 d65c5477-0bca-4777-88f5-f26e7d05d590_wgs_gdc_realn.bam 101626224533 BAM harmonized CPTAC3 6a521b51-0470-4cac-b8d2-6acaf2501d2e 167c273434e29e901497ee1e27b82cc5 {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01535.WGS.T C3N-01535 SAR WGS tumor CPT0096740009 CPT0096740009.WholeGenome.RP-1303.bam 67040660119 BAM submitted_aligned CPTAC3 685e047c-b598-4761-a1d2-d2cdcbfc4277 84b1c5cfefe5a9c0d8ed6fbd708a600e {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.WGS.T.hg38 C3N-01535 SAR WGS tumor CPT0096740009 4512b872-bb21-4e24-a60b-686a09b541dd_wgs_gdc_realn.bam 97657344939 BAM harmonized CPTAC3 6f88785d-b947-4a4f-9cd2-745614809970 175b1e91027e33d82705b5361d55438c {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.WXS.N C3N-01535 SAR WXS blood_normal CPT0096770002 CPT0096770002.WholeExome.RP-1303.bam 26513610908 BAM submitted_aligned CPTAC3 ee8e4763-1dd4-4fc4-a9a1-dd5011482ddc 499e498b1525bd9d862e6cbcba96d4f3 {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01535.WXS.N.hg38 C3N-01535 SAR WXS blood_normal CPT0096770002 d65c5477-0bca-4777-88f5-f26e7d05d590_wxs_gdc_realn.bam 36650094967 BAM harmonized CPTAC3 f9cd3cc2-91a6-4d1f-85a5-29f30a085140 68e823f834f7c70c306c5a4e95285aba {"aliquot_tag": "ALQ_2573fc58", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01535.WXS.T C3N-01535 SAR WXS tumor CPT0096740009 CPT0096740009.WholeExome.RP-1303.bam 28315153162 BAM submitted_aligned CPTAC3 985392d1-5f27-43d4-9408-4a078b920545 b79c16f152c93c52f4a9ae4c55e37d3b {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01535.WXS.T.hg38 C3N-01535 SAR WXS tumor CPT0096740009 4512b872-bb21-4e24-a60b-686a09b541dd_wxs_gdc_realn.bam 39679711894 BAM harmonized CPTAC3 f0996f63-279f-4b2e-b1bc-4a8e7dc5b1f0 391cc47277411ced8e3cec472aac63ef {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01536.MethArray.Green.A C3N-01536 CCRCC Methylation_Array tissue_normal CPT0096900006 204930630068_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1e8d4c40-7df4-442c-9a0d-d981cb6c8596 5605b2a03e507f5675f60b9705db62b3 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.MethArray.Green.T C3N-01536 CCRCC Methylation_Array tumor CPT0096890009 202234380024_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 bbd01878-7c76-4b18-9f23-febbc30f4ffa 6c658f0b5ba52a09acce77fe9da16190 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.MethArray.Red.A C3N-01536 CCRCC Methylation_Array tissue_normal CPT0096900006 204930630068_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 72f675c2-a12e-491f-9b62-5db8eb8643f8 e73388280d17161e3d25f7079f4a7093 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.MethArray.Red.T C3N-01536 CCRCC Methylation_Array tumor CPT0096890009 202234380024_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 ce569375-4159-454c-b60a-169b8277d789 22df829e34203a03119597e9992c0acf {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.miRNA-Seq.A.hg38 C3N-01536 CCRCC miRNA-Seq tissue_normal CPT0096900009 b348db52-d24c-4a45-bc34-61ee21ff036c_mirnaseq_gdc_realn.bam 249017950 BAM harmonized CPTAC3 f0f18551-a5af-4335-b9c3-d753c36a0a7e 8c2593ef2e76e287a911e4d79ca06e86 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.miRNA-Seq.S24_L008_R1.T C3N-01536 CCRCC miRNA-Seq tumor CPT0096890006 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L008_R1_001.unaln.bam 270630827 BAM S24_L008_R1 submitted_unaligned CPTAC3 8b406386-6ef7-498c-a069-251e66d38194 a5a57ad166d453db24be02040e216615 {"aliquot_tag": "ALQ_6c7834f5", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.miRNA-Seq.S28_L002_R1.A C3N-01536 CCRCC miRNA-Seq tissue_normal CPT0096900009 181119_UNC31-K00269_0165_AH27WCBBXY_TGACCA_S28_L002_R1_001.unaln.bam 230513861 BAM S28_L002_R1 submitted_unaligned CPTAC3 f8d5f59e-85ed-4520-b3a7-7fc36924cbdc 75f2ec2ed498355b0eefea1279f9c4d6 {"aliquot_tag": "ALQ_3a8b98b0", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.miRNA-Seq.T.hg38 C3N-01536 CCRCC miRNA-Seq tumor CPT0096890006 67238b6d-639d-4c69-8949-abe385ad8f27_mirnaseq_gdc_realn.bam 293903149 BAM harmonized CPTAC3 281525b4-a978-4b3b-858e-0b1971b474da 36b500f61106252d6e52d71b277736a1 {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.RNA-Seq.chimeric.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.chimeric.gdc_realn.bam 45793412 BAM chimeric harmonized CPTAC3 2bbe2c01-1bb4-431a-a5fa-dfef05dd1b46 f421182d510c230245991ae2fa96b745 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.RNA-Seq.chimeric.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.chimeric.gdc_realn.bam 91113663 BAM chimeric harmonized CPTAC3 ef66a021-56c6-41fa-a1ad-e085bf4d2ded a57748803f9929f7c65dae7aae5b8304 {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.RNA-Seq.genomic.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.genomic.gdc_realn.bam 9301910311 BAM genomic harmonized CPTAC3 82f4e93b-c502-4d56-a72c-5bd202cd4403 43ee4c628db86b3e36bb0987790fb7e9 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.RNA-Seq.genomic.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.genomic.gdc_realn.bam 8294701247 BAM genomic harmonized CPTAC3 03f0e3dc-cd15-4ca4-a869-b222013d4dfc f82e1e9ab19ddd7a4bcb2c9fd8ab9d2f {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.RNA-Seq.S12_L003_R1.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R1_001.fastq.gz 4090350533 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 e38cbc47-698a-4200-9052-204aee3e99a8 f9ae310764ea15c8f9e5ad7f3ab57397 {"aliquot_tag": "ALQ_3a8b98b0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.RNA-Seq.S12_L003_R2.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R2_001.fastq.gz 4448053190 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 20864a46-7a3d-41f5-a606-e64ba2bd50f8 e4bd9362fb81902e3a29dbe97db41ecc {"aliquot_tag": "ALQ_3a8b98b0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.RNA-Seq.S59_L007_R1.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R1_001.fastq.gz 3935856886 FASTQ S59_L007_R1 submitted_unaligned CPTAC3 660e64b7-4317-4354-bd0d-940ab05c3cdf db89cee89a25aa2f1f16a3c33301d6d3 {"aliquot_tag": "ALQ_6c7834f5", "sample": "S59", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.RNA-Seq.S59_L007_R2.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R2_001.fastq.gz 4257805410 FASTQ S59_L007_R2 submitted_unaligned CPTAC3 92e4b3b1-36db-464a-9351-b029e2fc459a 2c7e8ea4063863f302ac242be22ace67 {"aliquot_tag": "ALQ_6c7834f5", "sample": "S59", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.RNA-Seq.transcriptome.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.transcriptome.gdc_realn.bam 10533006090 BAM transcriptome harmonized CPTAC3 717bc3fd-374a-4fa3-b2aa-942079ee21ae 3db43928ae0625f118f69a8f66af2057 {"aliquot_tag": "ALQ_3a8b98b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.RNA-Seq.transcriptome.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.transcriptome.gdc_realn.bam 10015442160 BAM transcriptome harmonized CPTAC3 ad2883f1-20f1-4369-9322-d8270f7d0931 91391f69b49038bd17b4086bd90b5eb7 {"aliquot_tag": "ALQ_6c7834f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.WGS.A C3N-01536 CCRCC WGS tissue_normal CPT0096900006 CPT0096900006.WholeGenome.RP-1303.bam 66239733938 BAM submitted_aligned CPTAC3 6c768e7d-6f2e-4296-a981-d5d8c121f76a ea76b6eda42a5ed5e3ab6ad178ed0917 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.WGS.A.hg38 C3N-01536 CCRCC WGS tissue_normal CPT0096900006 e9b92874-68a0-45ca-b763-a078f3620f7f_wgs_gdc_realn.bam 95953713592 BAM harmonized CPTAC3 5e3b987c-8694-4021-8a76-1b2ffd4bf9cf f2d9e59f5a4e6083a0acdb6ad2090b09 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.WGS.N C3N-01536 CCRCC WGS blood_normal CPT0096910002 CPT0096910002.WholeGenome.RP-1303.bam 59230312683 BAM submitted_aligned CPTAC3 25f9836f-10a9-4f77-81c0-40fcc4db1132 90e6f23fd48c583cb76ead239a2c0181 {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01536.WGS.N.hg38 C3N-01536 CCRCC WGS blood_normal CPT0096910002 08b37d7b-4086-4c9b-bb5c-9b530201e4e0_wgs_gdc_realn.bam 87199326446 BAM harmonized CPTAC3 f76113e4-d3dd-4978-8bd9-23fd02ebe3f1 92ee005b165f933b1f9e5edf5d9350cd {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01536.WGS.T C3N-01536 CCRCC WGS tumor CPT0096890009 CPT0096890009.WholeGenome.RP-1303.bam 61515437996 BAM submitted_aligned CPTAC3 b233f0e1-ffb6-4af7-a9a7-e4671ae3e423 eca5e19e826b66d5158bbd45a1602e26 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.WGS.T.hg38 C3N-01536 CCRCC WGS tumor CPT0096890009 43bac8ef-91b7-4a9d-a5f3-f62cb9450fdd_wgs_gdc_realn.bam 89176016652 BAM harmonized CPTAC3 9477dd58-dade-4c6f-b24a-6acc98c95d0a 4a6945d8726b1bea86fb6a05c51c2b53 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.WXS.A C3N-01536 CCRCC WXS tissue_normal CPT0096900006 CPT0096900006.WholeExome.RP-1303.bam 33548306570 BAM submitted_aligned CPTAC3 d7f01d34-d5fa-4683-9b35-9caadb5798ed 4f33ccc714f2b7ca17781e587cddbee9 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.WXS.A.hg38 C3N-01536 CCRCC WXS tissue_normal CPT0096900006 e9b92874-68a0-45ca-b763-a078f3620f7f_wxs_gdc_realn.bam 44921916694 BAM harmonized CPTAC3 840e855e-98b4-4394-bd3b-b0ceadf6511d 4752be0d83f02cb6bcd9b6038f0913d7 {"aliquot_tag": "ALQ_aa348521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01536.WXS.N C3N-01536 CCRCC WXS blood_normal CPT0096910002 CPT0096910002.WholeExome.RP-1303.bam 53499578503 BAM submitted_aligned CPTAC3 fc490f58-b16d-4477-b2ee-e2eecfd4422f 1815065722285ed06abcae0dd3c71ae5 {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01536.WXS.N.hg38 C3N-01536 CCRCC WXS blood_normal CPT0096910002 08b37d7b-4086-4c9b-bb5c-9b530201e4e0_wxs_gdc_realn.bam 72279996282 BAM harmonized CPTAC3 f336a277-f3c6-4e3a-956b-f42097c04904 b94801d3d4a02294f9da90d36c22fadd {"aliquot_tag": "ALQ_90396888", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01536.WXS.T C3N-01536 CCRCC WXS tumor CPT0096890009 CPT0096890009.WholeExome.RP-1303.bam 32064740506 BAM submitted_aligned CPTAC3 1d9c4b5b-6eb2-4059-886f-6135995ab97b 5ea2fc72b2632b7b16952d217ae9d6d8 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01536.WXS.T.hg38 C3N-01536 CCRCC WXS tumor CPT0096890009 43bac8ef-91b7-4a9d-a5f3-f62cb9450fdd_wxs_gdc_realn.bam 44121671956 BAM harmonized CPTAC3 d160ae28-fc2c-44f3-9aaa-795e4bf280e0 d914530052b5fdc1e0a0d23287ae7920 {"aliquot_tag": "ALQ_fcc72964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.MethArray.Green.T C3N-01537 UCEC Methylation_Array tumor CPT0097010009 202234360025_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c65a2797-38f3-4553-8567-d99d861d7604 548d069e38b632b8ab92ce5b51d476f8 {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.MethArray.Red.T C3N-01537 UCEC Methylation_Array tumor CPT0097010009 202234360025_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 8389d5c4-4c6f-420f-890a-1085913018fa 90d09e463b935314070c138e5a338cff {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.miRNA-Seq.S25_L007_R1.T C3N-01537 UCEC miRNA-Seq tumor CPT0097010006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTGAT_S25_L007_R1_001.unaln.bam 214308257 BAM S25_L007_R1 submitted_unaligned CPTAC3 f8c385f1-843d-4649-a21a-4a501cd6e35c 748660cb68c7ea39ba20f5a2c7387634 {"aliquot_tag": "ALQ_162cf6ed", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.miRNA-Seq.T.hg38 C3N-01537 UCEC miRNA-Seq tumor CPT0097010006 e2391a17-5d82-4178-84e3-5a22e36e4b5b_mirnaseq_gdc_realn.bam 230765369 BAM harmonized CPTAC3 86d981ba-127d-4b67-b7ea-0bee81694a8b fc4f1463033e9252805f42aab7f7da6e {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.RNA-Seq.chimeric.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.chimeric.gdc_realn.bam 81336084 BAM chimeric harmonized CPTAC3 a4299e30-a207-4739-b28f-37f0c6dfff0c 4c4f8746dc7bedd7d625cd24a5b0b384 {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.RNA-Seq.genomic.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.genomic.gdc_realn.bam 9947269055 BAM genomic harmonized CPTAC3 e871a49b-e54d-496c-a7bb-b26cff29b025 8aff5cffda743759c39a94513d003d52 {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.RNA-Seq.S60_L007_R1.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R1_001.fastq.gz 4274186903 FASTQ S60_L007_R1 submitted_unaligned CPTAC3 c00f784d-3143-4e88-b652-40a42aa38f53 80d126071a4cdca39d78ad71e235b186 {"aliquot_tag": "ALQ_162cf6ed", "sample": "S60", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.RNA-Seq.S60_L007_R2.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R2_001.fastq.gz 4759021162 FASTQ S60_L007_R2 submitted_unaligned CPTAC3 53445ea6-98ca-4134-a8bb-cd64497935a7 5133ada79294bde8a80689ee10b62158 {"aliquot_tag": "ALQ_162cf6ed", "sample": "S60", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.RNA-Seq.transcriptome.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.transcriptome.gdc_realn.bam 8695346254 BAM transcriptome harmonized CPTAC3 c52accad-b0e0-43b9-a372-e8f5e276580e 33746cd38417c7a26782c67460b758e1 {"aliquot_tag": "ALQ_162cf6ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.WGS.N C3N-01537 UCEC WGS blood_normal CPT0097050002 CPT0097050002.WholeGenome.RP-1303.bam 54120391438 BAM submitted_aligned CPTAC3 efab4a3f-aec8-490c-95bc-bd700e1ec420 07098858535cb37632d98a47a5974ddd {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01537.WGS.N.hg38 C3N-01537 UCEC WGS blood_normal CPT0097050002 ef01edb4-ba7c-427e-a2b0-d5099f8d06fb_wgs_gdc_realn.bam 80462406863 BAM harmonized CPTAC3 809337b5-5049-4bb0-942f-b85a59d52743 960886384846b889001479e831d6fef9 {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01537.WGS.T C3N-01537 UCEC WGS tumor CPT0097010009 CPT0097010009.WholeGenome.RP-1303.bam 67968033529 BAM submitted_aligned CPTAC3 62e6d430-f202-4e98-8a2f-62e5a49c1664 833f613f6b675bcd4f1c372ecd4209eb {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.WGS.T.hg38 C3N-01537 UCEC WGS tumor CPT0097010009 af300af0-16e5-424e-8f44-acb85517ac35_wgs_gdc_realn.bam 99420362694 BAM harmonized CPTAC3 1c4ad51e-2c49-44ce-855e-8601191e51f1 eab1f593ee190b71148d3a0a205037f2 {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.WXS.N C3N-01537 UCEC WXS blood_normal CPT0097050002 CPT0097050002.WholeExome.RP-1303.bam 35008647187 BAM submitted_aligned CPTAC3 e0ecebcc-1693-4311-abda-f4b80b390f9a e67c03f87ca82a5afe74a7272b04774e {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01537.WXS.N.hg38 C3N-01537 UCEC WXS blood_normal CPT0097050002 ef01edb4-ba7c-427e-a2b0-d5099f8d06fb_wxs_gdc_realn.bam 48565122048 BAM harmonized CPTAC3 07b497aa-3dd9-433a-b3fc-1d6ff9c23806 a318b23e31a9db2c91ab8dc96d178c60 {"aliquot_tag": "ALQ_e4c19434", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01537.WXS.T C3N-01537 UCEC WXS tumor CPT0097010009 CPT0097010009.WholeExome.RP-1303.bam 40810350630 BAM submitted_aligned CPTAC3 fc511a09-fb95-46c1-bae3-bea2b6a7ecc2 b48e96767c63b4c0ad7d91f6e7debeae {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01537.WXS.T.hg38 C3N-01537 UCEC WXS tumor CPT0097010009 af300af0-16e5-424e-8f44-acb85517ac35_wxs_gdc_realn.bam 56603549603 BAM harmonized CPTAC3 8896b39a-df49-48b1-97f6-2573ecef6b08 7e0a2937fc4dcde788f84c4eb7e6ce45 {"aliquot_tag": "ALQ_8693eb7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.MethArray.Green.T C3N-01620 HNSCC Methylation_Array tumor CPT0095040008 202234380054_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 91525673-16f3-4c58-8ec4-94f6671e350e 69ce7c36ff5ae7662138f521cf5aed81 {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.MethArray.Red.T C3N-01620 HNSCC Methylation_Array tumor CPT0095040008 202234380054_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 fa7af051-86a1-4464-a2c1-e9adbe34258e 0066cc379847346d7ab2363ce09dd54b {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.miRNA-Seq.S26_L007_R1.T C3N-01620 HNSCC miRNA-Seq tumor CPT0095040006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L007_R1_001.unaln.bam 194627771 BAM S26_L007_R1 submitted_unaligned CPTAC3 25856de4-ec3d-4b73-9a93-c4a19210793a cc01ba68ced2d0a994a5ec64b2ecea49 {"aliquot_tag": "ALQ_495368b4", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.miRNA-Seq.T.hg38 C3N-01620 HNSCC miRNA-Seq tumor CPT0095040006 3fcf3ac4-2604-430a-9808-ac4e1f1cd86f_mirnaseq_gdc_realn.bam 213350197 BAM harmonized CPTAC3 90b6502f-09cb-4718-8919-f41b8b7cf311 be9c8c77ce870f8bc3b8a7c64455238f {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.chimeric.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.chimeric.gdc_realn.bam 69995330 BAM chimeric harmonized CPTAC3 406fef01-6454-424c-9b05-c4d2b46cd8c8 2b122e037802452264dc82384c538a46 {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.chimeric.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.chimeric.gdc_realn.bam 44583242 BAM chimeric harmonized CPTAC3 3956b988-7a2a-421e-a2b1-cf55eea4a7d2 2316b0f860ad38f180c16ecef7aff3b6 {"aliquot_tag": "ALQ_e64adf9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.genomic.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.genomic.gdc_realn.bam 7298102385 BAM genomic harmonized CPTAC3 4e755fde-b683-4d2d-b246-dd9083b69aa0 42fe4050a3da9a784565d5acb1ddf446 {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.genomic.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.genomic.gdc_realn.bam 7241684475 BAM genomic harmonized CPTAC3 19cb551b-e22c-4f25-8597-70634c48f195 914a01e87c6c807f28a42d89f4a8778f {"aliquot_tag": "ALQ_e64adf9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.S24_R1.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R1_001.fastq.gz 3937161859 FASTQ S24_R1 submitted_unaligned CPTAC3 a7be9dfc-ed94-4de5-92e2-6ff7f9d9e218 bb135e7ffbb9715ab7aa35109fb1e57a {"aliquot_tag": "ALQ_e64adf9f", "sample": "S24", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.S24_R2.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R2_001.fastq.gz 4471803060 FASTQ S24_R2 submitted_unaligned CPTAC3 7590171e-43a8-4d1d-9a36-0a83720882bb a368a3a35589b99ea0c16ddbedc0410f {"aliquot_tag": "ALQ_e64adf9f", "sample": "S24", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.S61_L007_R1.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R1_001.fastq.gz 3420638026 FASTQ S61_L007_R1 submitted_unaligned CPTAC3 101fbac5-f118-4d4f-85c2-b8973eab7003 024979749350168bb39f36d2586b8825 {"aliquot_tag": "ALQ_495368b4", "sample": "S61", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.S61_L007_R2.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R2_001.fastq.gz 3676007510 FASTQ S61_L007_R2 submitted_unaligned CPTAC3 d2b324b1-0971-4ea9-a765-0c493db0de32 eb4fa897dccb8bf669abf8202575805b {"aliquot_tag": "ALQ_495368b4", "sample": "S61", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.transcriptome.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.transcriptome.gdc_realn.bam 8816786275 BAM transcriptome harmonized CPTAC3 c5640b6e-baf4-45a7-a9a1-566ee962b7e3 a5f22fc85a004058206fa396ed657d63 {"aliquot_tag": "ALQ_495368b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.RNA-Seq.transcriptome.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.transcriptome.gdc_realn.bam 6199770569 BAM transcriptome harmonized CPTAC3 90bfa36b-84ba-4605-83c8-ea72b075217e d8117662dc1c75fa5c63ac68da0a4977 {"aliquot_tag": "ALQ_e64adf9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.WGS.N C3N-01620 HNSCC WGS blood_normal CPT0095090002 CPT0095090002.WholeGenome.RP-1303.bam 66896774235 BAM submitted_aligned CPTAC3 be2950b0-5ad6-49cc-b2a0-c9a05c7c4e78 2cde713d7537992a62abdb3b82c8288f {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01620.WGS.N.hg38 C3N-01620 HNSCC WGS blood_normal CPT0095090002 af83ea9a-ebb4-4b0b-83c5-c7a546730ab2_wgs_gdc_realn.bam 97682387019 BAM harmonized CPTAC3 4a688896-18be-4b3d-991b-56ccbbf3194e 07901c5080abc7cb23d6a79b5d5f5aa3 {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01620.WGS.T C3N-01620 HNSCC WGS tumor CPT0095040008 CPT0095040008.WholeGenome.RP-1303.bam 63742066560 BAM submitted_aligned CPTAC3 b7cd1da1-4e04-48fe-a35a-a121a8b6cba8 8092e26f02aefb81c8a10d52728c1f9b {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.WGS.T.hg38 C3N-01620 HNSCC WGS tumor CPT0095040008 218efc47-ff68-416d-808f-25eed41215cf_wgs_gdc_realn.bam 92206797943 BAM harmonized CPTAC3 f926d254-a4b7-4874-b557-94618deba359 db2345f11b6f067f6cbb127f92a57bce {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.WXS.N C3N-01620 HNSCC WXS blood_normal CPT0095090002 CPT0095090002.WholeExome.RP-1303.bam 47982221861 BAM submitted_aligned CPTAC3 d55cfd1d-d182-443f-8359-e46b58350b15 a61f44fc403ddfebf07d45efa206bd29 {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01620.WXS.N.hg38 C3N-01620 HNSCC WXS blood_normal CPT0095090002 af83ea9a-ebb4-4b0b-83c5-c7a546730ab2_wxs_gdc_realn.bam 64461335296 BAM harmonized CPTAC3 95976917-9d03-457b-9530-a1096f15d06b 56dd35dd6224b17daa670f8ed13a5eca {"aliquot_tag": "ALQ_b6ae681c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01620.WXS.T C3N-01620 HNSCC WXS tumor CPT0095040008 CPT0095040008.WholeExome.RP-1303.bam 40519068345 BAM submitted_aligned CPTAC3 df6bcab0-15bb-4864-941f-28f30abec866 e13422ac35a5f0b931047b31c268d746 {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01620.WXS.T.hg38 C3N-01620 HNSCC WXS tumor CPT0095040008 218efc47-ff68-416d-808f-25eed41215cf_wxs_gdc_realn.bam 55436605355 BAM harmonized CPTAC3 c8b3ab18-65cc-4904-9232-fd0437311075 a6eab25aeb5472ef333ac5f7adc4dad3 {"aliquot_tag": "ALQ_aeeb45b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.MethArray.Green.T C3N-01643 HNSCC Methylation_Array tumor CPT0162890006 203271740119_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2ba782bf-4bd3-42e4-ac89-ae419b433f6b 86d0f8c9646739f73c52611f4a5d6b09 {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.MethArray.Red.T C3N-01643 HNSCC Methylation_Array tumor CPT0162890006 203271740119_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 24d2384d-c78d-41e1-a089-044c3c2cd51f 2e16aae96a0c783149587fd709e5bd3a {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.miRNA-Seq.S20_L001_R1.T C3N-01643 HNSCC miRNA-Seq tumor CPT0162890009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L001_R1_001.unaln.bam 261191417 BAM S20_L001_R1 submitted_unaligned CPTAC3 ccbbe05f-2a1f-413e-92c8-1d26b8332f29 96c461b16fb1148efd0513330cb3b33d {"aliquot_tag": "ALQ_c6d30b98", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.miRNA-Seq.T.hg38 C3N-01643 HNSCC miRNA-Seq tumor CPT0162890009 eec1b1f0-97e1-4776-8603-8254d9bf0102_mirnaseq_gdc_realn.bam 287219894 BAM harmonized CPTAC3 42a97544-5816-41f7-8613-b5e9d5359d65 1efe295398f3c27a2e9b3c10c041f99f {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.RNA-Seq.chimeric.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.chimeric.gdc_realn.bam 83919279 BAM chimeric harmonized CPTAC3 0e55c46a-7cd9-42fb-9c2f-c6d1a9290512 de399206420ed894c3c693623d83240c {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.RNA-Seq.genomic.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.genomic.gdc_realn.bam 6158350661 BAM genomic harmonized CPTAC3 23839b7e-fa9a-4f27-8b82-687070367d9c fd9f9e4946817f03162e46a0b1ba76e7 {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.RNA-Seq.S23_L006_R1.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R1_001.fastq.gz 2836605120 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 5787ea66-4b29-4c37-9164-f9ded1ab6a6c c59c8bb6fbfbfdd264ca9b0679a7f864 {"aliquot_tag": "ALQ_c6d30b98", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.RNA-Seq.S23_L006_R2.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R2_001.fastq.gz 3262156883 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 c6259c4e-6ad1-4843-bc1b-48fbe4ff210d 11dcbfe4c0b76421381a7912446df746 {"aliquot_tag": "ALQ_c6d30b98", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.RNA-Seq.transcriptome.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.transcriptome.gdc_realn.bam 8842615098 BAM transcriptome harmonized CPTAC3 981ba168-4ccf-4c6e-9d6f-3fad049cf472 2ad9900f7470ee4b98c8679ff9fe9b09 {"aliquot_tag": "ALQ_c6d30b98", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.WGS.N C3N-01643 HNSCC WGS blood_normal CPT0162920002 CPT0162920002.WholeGenome.RP-1303.bam 79784822241 BAM submitted_aligned CPTAC3 1e392dc6-1323-4817-9e9f-8cd7a4893065 a27027a04db28f1d9cab397ea6d5e35c {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01643.WGS.N.hg38 C3N-01643 HNSCC WGS blood_normal CPT0162920002 3a523f18-8fae-4b63-ac71-d5c0b95b0170_wgs_gdc_realn.bam 115358783101 BAM harmonized CPTAC3 27bb5c8d-940b-42ca-b219-4d06c7f98195 c7643817bddc5358af51ea8ef7d5f7dc {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01643.WGS.T C3N-01643 HNSCC WGS tumor CPT0162890006 CPT0162890006.WholeGenome.RP-1303.bam 80084376667 BAM submitted_aligned CPTAC3 02fa26c9-66fe-45b9-a2af-35e04ed12097 9046695aad3a5def78d4a4f842e04371 {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.WGS.T.hg38 C3N-01643 HNSCC WGS tumor CPT0162890006 2cc6a1c3-9405-488f-bf9c-3b10bfc84473_wgs_gdc_realn.bam 117754027414 BAM harmonized CPTAC3 ae648b35-ddd8-4811-af7c-c23da50fbaeb 10afc190cb7de1cfd29da04d4a86baa3 {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.WXS.N C3N-01643 HNSCC WXS blood_normal CPT0162920002 CPT0162920002.WholeExome.RP-1303.bam 31840487510 BAM submitted_aligned CPTAC3 6edabfcc-ae57-407d-af5b-4282bcd0edd8 7599e63ac5e81d3d6e95248f54dc247a {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01643.WXS.N.hg38 C3N-01643 HNSCC WXS blood_normal CPT0162920002 3a523f18-8fae-4b63-ac71-d5c0b95b0170_wxs_gdc_realn.bam 43970397040 BAM harmonized CPTAC3 2d829df4-a5b2-4610-ae9d-2353ea90ae02 d5d3126ff473eeaa3d11c265c47e8863 {"aliquot_tag": "ALQ_ed8d30a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01643.WXS.T C3N-01643 HNSCC WXS tumor CPT0162890006 CPT0162890006.WholeExome.RP-1303.bam 22244306237 BAM submitted_aligned CPTAC3 36afcc54-35e4-4d59-bfa8-f6e7eef821eb 3af219b7072e7ff65a8230125184105a {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01643.WXS.T.hg38 C3N-01643 HNSCC WXS tumor CPT0162890006 2cc6a1c3-9405-488f-bf9c-3b10bfc84473_wxs_gdc_realn.bam 30304630018 BAM harmonized CPTAC3 74789b19-017d-4da7-86de-230a7709fd8c c7fcc53818c6ec44a4182af3d6c6450c {"aliquot_tag": "ALQ_566c1609", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.MethArray.Green.T C3N-01645 HNSCC Methylation_Array tumor CPT0088410009 202234370095_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 416cec05-4c9c-46b9-9323-adc61197a279 86a829f07a340c11227aeff73d5759e7 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.MethArray.Red.T C3N-01645 HNSCC Methylation_Array tumor CPT0088410009 202234370095_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 8ecc05dd-3de6-433e-8bc2-201f54ef6a6a b07883c659d357cf14630f4c20bc19fc {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.miRNA-Seq.A.hg38 C3N-01645 HNSCC miRNA-Seq tissue_normal CPT0088430006 66397cdb-552a-4261-aeb5-eaac82a9421f_mirnaseq_gdc_realn.bam 207522515 BAM harmonized CPTAC3 69ef8d4e-62e2-43f4-b8e9-c00a904cc2a5 983678a079adc0e66abb73af041a7278 {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01645.miRNA-Seq.S33_L008_R1.T C3N-01645 HNSCC miRNA-Seq tumor CPT0088410006 180724_UNC32-K00270_0106_BHWK3MBBXX_TAGCTT_S33_L008_R1_001.unaln.bam 379357618 BAM S33_L008_R1 submitted_unaligned CPTAC3 c4889f7b-a2b7-4eb6-b3d5-09a2fcaf2d6e 10961e4240e365177081606fd173cfcf {"aliquot_tag": "ALQ_b75fc48c", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.miRNA-Seq.S4_L001_R1.A C3N-01645 HNSCC miRNA-Seq tissue_normal CPT0088430006 181119_UNC31-K00269_0165_AH27WCBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 186392916 BAM S4_L001_R1 submitted_unaligned CPTAC3 8f08970f-77dd-4db7-b0ab-b09add3b2d65 7de463e84a009e5e30458133f157a9d4 {"aliquot_tag": "ALQ_cd9f97ec", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01645.miRNA-Seq.T.hg38 C3N-01645 HNSCC miRNA-Seq tumor CPT0088410006 df557db2-ee18-42b6-84d9-e178bcdc3981_mirnaseq_gdc_realn.bam 406192942 BAM harmonized CPTAC3 d8a03591-6c7f-4362-8151-b0a7ad36d23b 878c93d8dcbed023ccb23d065d9b4388 {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.RNA-Seq.chimeric.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.chimeric.gdc_realn.bam 27030231 BAM chimeric harmonized CPTAC3 a4c84361-5112-4d1b-bbe3-857b2b6a452d f9c7a904011c50952fb38221285a8220 {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01645.RNA-Seq.chimeric.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.chimeric.gdc_realn.bam 38754967 BAM chimeric harmonized CPTAC3 588a694d-d450-42ab-9a5a-8a91b85fd7f2 f5b3fd8f2c418aa706d1120e4f29961b {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.RNA-Seq.genomic.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.genomic.gdc_realn.bam 9080438046 BAM genomic harmonized CPTAC3 e18cf435-511b-4829-86fd-ebda8f084d2c 74fd1f2ee0bb2136f96c420845dea3dd {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01645.RNA-Seq.genomic.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.genomic.gdc_realn.bam 9060136674 BAM genomic harmonized CPTAC3 7a62177c-e814-411d-813f-67dc6bcdf746 27240e13ae3ec286c3b0df5b069a5815 {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.RNA-Seq.S11_L003_R1.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4328072097 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 2048be25-a5d2-4f0a-bed9-ec4a2614235e af791e298c6ec5bbaa6cae5cf25fa40b {"aliquot_tag": "ALQ_b75fc48c", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.RNA-Seq.S11_L003_R2.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4801207820 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 6a644c2f-2ff7-4afd-8668-943578a54d91 b2c34bf02d1f53da2ce981ebf3f9b924 {"aliquot_tag": "ALQ_b75fc48c", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.RNA-Seq.S20_L005_R1.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4280442009 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 2db2fa96-3234-4ad2-b8e7-b85dba4b294d aa09d7f9c74979669e8c8c2d8c80126d {"aliquot_tag": "ALQ_cd9f97ec", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01645.RNA-Seq.S20_L005_R2.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4537414006 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 b987f708-c205-4346-a37f-1ff39f9cbacc 6079811716e5671e4d3250c5032fed90 {"aliquot_tag": "ALQ_cd9f97ec", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01645.RNA-Seq.transcriptome.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.transcriptome.gdc_realn.bam 12706794641 BAM transcriptome harmonized CPTAC3 078934e7-7d16-4d63-9853-4d888f97b353 f97f677f588b9afe4cbfed901cb4bbc3 {"aliquot_tag": "ALQ_cd9f97ec", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01645.RNA-Seq.transcriptome.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.transcriptome.gdc_realn.bam 13003250462 BAM transcriptome harmonized CPTAC3 bb2b0254-62c4-4d14-ab75-2c20b9d23175 6130116f2b323174e32d14e559b2b0bf {"aliquot_tag": "ALQ_b75fc48c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.WGS.N C3N-01645 HNSCC WGS blood_normal CPT0088470002 CPT0088470002.WholeGenome.RP-1303.bam 63333267290 BAM submitted_aligned CPTAC3 19bf5c59-a749-4e57-ac5d-0d256e6c2e3a 02ea333624fc62f39b237edea3f054e9 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01645.WGS.N.hg38 C3N-01645 HNSCC WGS blood_normal CPT0088470002 80df1466-22ac-4228-96c8-70fa89fd5562_wgs_gdc_realn.bam 93078724190 BAM harmonized CPTAC3 34d5b9b4-f23a-4279-9319-449c715d711f b58d1b5464ca14a5c9a93f5511b5b207 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01645.WGS.T C3N-01645 HNSCC WGS tumor CPT0088410009 CPT0088410009.WholeGenome.RP-1303.bam 74769935732 BAM submitted_aligned CPTAC3 dbdbbc7c-b85e-4921-aff1-9e48beedc5e5 893b9cd7d9033a223ace9c80aa9db26d {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.WGS.T.hg38 C3N-01645 HNSCC WGS tumor CPT0088410009 16a5f787-8486-4d36-b8f2-3354ddd700a0_wgs_gdc_realn.bam 110354572599 BAM harmonized CPTAC3 0cf78127-08f2-45ff-b200-57d28e0d4ac4 849e38502d3b943b2f85991084f95804 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.WXS.N C3N-01645 HNSCC WXS blood_normal CPT0088470002 CPT0088470002.WholeExome.RP-1303.bam 29588473790 BAM submitted_aligned CPTAC3 05d5f33f-1924-437e-8ce5-71b996e1c98f 8edd5e7d5360872ec8f0f8a8c3f0ac14 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01645.WXS.N.hg38 C3N-01645 HNSCC WXS blood_normal CPT0088470002 80df1466-22ac-4228-96c8-70fa89fd5562_wxs_gdc_realn.bam 41294167690 BAM harmonized CPTAC3 16bebd5f-24a5-493d-9fe0-33369bbbb47d e7e23ada6460237f4da690449267de33 {"aliquot_tag": "ALQ_3f72f535", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01645.WXS.T C3N-01645 HNSCC WXS tumor CPT0088410009 CPT0088410009.WholeExome.RP-1303.bam 29151713577 BAM submitted_aligned CPTAC3 f47d2a02-c363-44cf-9d57-cf4b61638f5b c42bec43266726e51708a2142c06a6b2 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01645.WXS.T.hg38 C3N-01645 HNSCC WXS tumor CPT0088410009 16a5f787-8486-4d36-b8f2-3354ddd700a0_wxs_gdc_realn.bam 39299820832 BAM harmonized CPTAC3 e85d142d-5169-42c5-9cdd-393396ab13c3 9056a6b10fac1c7549fc101cbeea76e3 {"aliquot_tag": "ALQ_27e0d91d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.MethArray.Green.A C3N-01646 CCRCC Methylation_Array tissue_normal CPT0088500014 204930640065_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a50156ed-5bd0-4df0-8dc4-f9559569b8de 3be7c98b255fbc253a744617c96a423a {"aliquot_tag": "ALQ_b6766ef4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.MethArray.Green.T C3N-01646 CCRCC Methylation_Array tumor CPT0088480009 202163550115_R04C01_Grn.idat 13676230 IDAT Green NA CPTAC3 f928f712-916d-41a5-a30a-6781df748b8f 9d51bffec66ed73dc8fbf3fd317e6f93 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.MethArray.Red.A C3N-01646 CCRCC Methylation_Array tissue_normal CPT0088500014 204930640065_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 693656c0-73da-4322-8a35-612d4a4b25b4 5e09a1ba818329034762d1f84d67f540 {"aliquot_tag": "ALQ_b6766ef4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.MethArray.Red.T C3N-01646 CCRCC Methylation_Array tumor CPT0088480009 202163550115_R04C01_Red.idat 13676230 IDAT Red NA CPTAC3 be0af83b-56ee-4361-b79e-435c5504c5e5 0bf10a0ea5690e74ae39f5db1a2447a6 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.miRNA-Seq.A.hg38 C3N-01646 CCRCC miRNA-Seq tissue_normal CPT0088500006 ca2012d9-b066-4ef9-a3ef-4f1ac71b52bc_mirnaseq_gdc_realn.bam 245504293 BAM harmonized CPTAC3 e1e54d42-9540-42e9-a97d-43fc1a7c7bb4 ed1bf84cf2ebfbf5f698a8ed82292157 {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.miRNA-Seq.S13_L006_R1.T C3N-01646 CCRCC miRNA-Seq tumor CPT0088480006 181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L006_R1_001.unaln.bam 178224642 BAM S13_L006_R1 submitted_unaligned CPTAC3 a54381c6-555f-4794-aef6-1de1f5daf2b8 b77d4b4e2f2b3167c80a548ccf274880 {"aliquot_tag": "ALQ_ba4fa6fd", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.miRNA-Seq.S29_L002_R1.A C3N-01646 CCRCC miRNA-Seq tissue_normal CPT0088500006 181108_UNC31-K00269_0163_BH23TVBBXY_CAACTA_S29_L002_R1_001.unaln.bam 218547190 BAM S29_L002_R1 submitted_unaligned CPTAC3 3b09e1de-af9a-42d6-97d4-cabf6fc732f0 f9e10c18303ddbc12f553d4056d77596 {"aliquot_tag": "ALQ_41633e99", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.miRNA-Seq.T.hg38 C3N-01646 CCRCC miRNA-Seq tumor CPT0088480006 608319b0-b2c1-43b5-8c73-5e0d41ea272a_mirnaseq_gdc_realn.bam 198060449 BAM harmonized CPTAC3 c3835a5a-8a99-4a58-a773-6cedee135994 d620a02e131766b5d50f9b3d0c8344db {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.RNA-Seq.chimeric.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.chimeric.gdc_realn.bam 68561196 BAM chimeric harmonized CPTAC3 b4bacfb8-e6f7-49c4-8908-46693848bf09 bf187d7a0600d93744cebdbcf4bf1f9c {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.RNA-Seq.chimeric.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.chimeric.gdc_realn.bam 37570182 BAM chimeric harmonized CPTAC3 3ad3f01d-55ff-4157-9ef9-2f4fab1b2d71 f952f101a803d086916259955b48a125 {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.RNA-Seq.genomic.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.genomic.gdc_realn.bam 6192725491 BAM genomic harmonized CPTAC3 49b7c885-4816-489c-a4e3-c5d238bf0224 20a162051585286a94310dc8480fc32c {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.RNA-Seq.genomic.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.genomic.gdc_realn.bam 7290168999 BAM genomic harmonized CPTAC3 b8a37405-49cf-4cbc-90f7-012bc4567568 90d67b517f9b43ca1d2f7e60d5875656 {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.RNA-Seq.S18_L005_R1.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3695613331 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 39cc7d92-b8fc-483b-a7e6-aa8e17b1173f 93138411acaca7710434ff51a9bd1a31 {"aliquot_tag": "ALQ_ba4fa6fd", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.RNA-Seq.S18_L005_R2.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3804275294 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 0bfa3487-2ce2-406f-b484-badbbed737e0 8755dc95b11a61aed07f1ec0bf57ec6a {"aliquot_tag": "ALQ_ba4fa6fd", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.RNA-Seq.S2_L008_R1.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R1_001.fastq.gz 3127975323 FASTQ S2_L008_R1 submitted_unaligned CPTAC3 64c20469-68d8-457c-92e4-a6c393f71166 2af549a10111c6ad95800a52b06ebf75 {"aliquot_tag": "ALQ_41633e99", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.RNA-Seq.S2_L008_R2.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R2_001.fastq.gz 3340280919 FASTQ S2_L008_R2 submitted_unaligned CPTAC3 2eff898e-bd0f-4274-82fe-e8862845720a aec035c90a49da35818cf5bbd14ab1eb {"aliquot_tag": "ALQ_41633e99", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.RNA-Seq.transcriptome.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.transcriptome.gdc_realn.bam 7880643956 BAM transcriptome harmonized CPTAC3 4582476b-2482-47a2-b46b-8dc3aca29ea8 7c494e8d2e04f90dd73af380ac6dcbb0 {"aliquot_tag": "ALQ_41633e99", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.RNA-Seq.transcriptome.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.transcriptome.gdc_realn.bam 10756893923 BAM transcriptome harmonized CPTAC3 a0bc2d4f-4e72-4bab-ae76-29b6c01b7129 3110f267ab2102f2d18a3fb72908e5cd {"aliquot_tag": "ALQ_ba4fa6fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.WGS.A C3N-01646 CCRCC WGS tissue_normal CPT0088500009 CPT0088500009.WholeGenome.RP-1303.bam 59516633791 BAM submitted_aligned CPTAC3 1b73486d-0797-42ab-adb6-b88d5bba2c15 e40448b298e95aeb4eeecf4b8639ee4a {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.WGS.A.hg38 C3N-01646 CCRCC WGS tissue_normal CPT0088500009 f3018fe2-c6e6-4b40-a9ee-1b3cec6e4fc6_wgs_gdc_realn.bam 88326106360 BAM harmonized CPTAC3 15589b76-2d50-4fcb-9c7d-13b9bb7b8ae2 bfd31ba75020b45e3268410774533998 {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.WGS.N C3N-01646 CCRCC WGS blood_normal CPT0088540001 CPT0088540001.WholeGenome.RP-1303.bam 75692490231 BAM submitted_aligned CPTAC3 0466a30f-7319-4529-9374-3c44c6c4e453 b40e272b7b058f6fffce1bcc1b95261b {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01646.WGS.N.hg38 C3N-01646 CCRCC WGS blood_normal CPT0088540001 da82f377-04a7-47d3-9ef3-06e9f3e0ea87_gdc_realn.bam 115720961974 BAM harmonized CPTAC3 42cf20b6-c8c3-4e48-8b84-12ddf88dfdef bc3833d9a58f882d0b4a020f221804e0 {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01646.WGS.T C3N-01646 CCRCC WGS tumor CPT0088480009 CPT0088480009.WholeGenome.RP-1303.bam 75767928751 BAM submitted_aligned CPTAC3 e8014dc8-62e9-41cc-8d44-e222f5cddbd6 72a9fac6b04151b0ee22e5c6b1477d64 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.WGS.T.hg38 C3N-01646 CCRCC WGS tumor CPT0088480009 2211e92d-464a-4a04-aafe-563f44f28acf_gdc_realn.bam 112759278498 BAM harmonized CPTAC3 01a5797b-6984-43a9-84e2-019876b9ad76 38a6289753fc4a543960d49ff15bffa7 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.WXS.A C3N-01646 CCRCC WXS tissue_normal CPT0088500009 CPT0088500009.WholeExome.RP-1303.bam 30977709539 BAM submitted_aligned CPTAC3 20c21d6a-3dde-4b2e-9198-d0fcc91126be 498f1f0fe05efaf8af7f303bf19d47e5 {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.WXS.A.hg38 C3N-01646 CCRCC WXS tissue_normal CPT0088500009 f3018fe2-c6e6-4b40-a9ee-1b3cec6e4fc6_wxs_gdc_realn.bam 41428131089 BAM harmonized CPTAC3 e5288d42-bf7a-4aa0-916c-74f371eb98c4 133105a3357ffe77493fdba4761255b8 {"aliquot_tag": "ALQ_d1dc2308", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01646.WXS.N C3N-01646 CCRCC WXS blood_normal CPT0088540001 CPT0088540001.WholeExome.RP-1303.bam 28434115627 BAM submitted_aligned CPTAC3 a131223c-f4db-4c02-a5c9-23b1157bcf6a bb31775fa49040dcd1672434761c435a {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01646.WXS.N.hg38 C3N-01646 CCRCC WXS blood_normal CPT0088540001 da82f377-04a7-47d3-9ef3-06e9f3e0ea87_gdc_realn.bam 38675291851 BAM harmonized CPTAC3 b5459b34-72f9-419f-bd0e-bcb1a95d49b1 89249e2ff9f82045bd6eb8675d15b8e2 {"aliquot_tag": "ALQ_2a870dfa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01646.WXS.T C3N-01646 CCRCC WXS tumor CPT0088480009 CPT0088480009.WholeExome.RP-1303.bam 26576055195 BAM submitted_aligned CPTAC3 98152d1c-1741-49f1-8e14-4ef6d5256500 dab52acd19d1a2774fa5b43573f45647 {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01646.WXS.T.hg38 C3N-01646 CCRCC WXS tumor CPT0088480009 2211e92d-464a-4a04-aafe-563f44f28acf_gdc_realn.bam 36797472131 BAM harmonized CPTAC3 914712d2-e33c-424c-8bdf-e6664e9dcad8 4f3d2892b9a3498e0c8dcb5a6790a40e {"aliquot_tag": "ALQ_2af0bb6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.MethArray.Green.A C3N-01648 CCRCC Methylation_Array tissue_normal CPT0088570009 204930630107_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e4d83f50-ccfe-4e42-9695-c487af0df4a3 800adc85a7a8eb4cd9b12e2ca3cdedeb {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.MethArray.Green.T C3N-01648 CCRCC Methylation_Array tumor CPT0088550010 202176290145_R04C01_Grn.idat 13676225 IDAT Green NA CPTAC3 3dc18342-d0c0-4af0-930b-5323b8c9f3de db124f44abdc48c542b8a52c4a34c86c {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.MethArray.Red.A C3N-01648 CCRCC Methylation_Array tissue_normal CPT0088570009 204930630107_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 36d0ec86-cf53-45bf-9e8c-0da8b9172abc b1cbff6add34b93d0e311de303d76411 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.MethArray.Red.T C3N-01648 CCRCC Methylation_Array tumor CPT0088550010 202176290145_R04C01_Red.idat 13676225 IDAT Red NA CPTAC3 f1afd5d5-2900-43dd-afaa-d69cdfe32bf9 f6d6851d5e1a6a7f3a7b35392c110875 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.miRNA-Seq.A.hg38 C3N-01648 CCRCC miRNA-Seq tissue_normal CPT0088570006 eca4739f-1713-4344-863d-f52e4e86d332_mirnaseq_gdc_realn.bam 238210578 BAM harmonized CPTAC3 73b6e4c4-d634-4045-8e6d-5930da08f6db b005ff6b55e18e70767a70818204ed00 {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.miRNA-Seq.S14_L006_R1.T C3N-01648 CCRCC miRNA-Seq tumor CPT0088550007 181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L006_R1_001.unaln.bam 172823540 BAM S14_L006_R1 submitted_unaligned CPTAC3 c8777537-afb3-4b31-91be-ffccd1156053 9bf874b57c026b960c0ecd04e12c31cb {"aliquot_tag": "ALQ_fe84817f", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.miRNA-Seq.S30_L002_R1.A C3N-01648 CCRCC miRNA-Seq tissue_normal CPT0088570006 181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L002_R1_001.unaln.bam 212046831 BAM S30_L002_R1 submitted_unaligned CPTAC3 a9a0a010-a48f-4b03-a2c8-73fa3b43341d ab920b36d56e5e07d2de405f4d917282 {"aliquot_tag": "ALQ_f343e289", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.miRNA-Seq.T.hg38 C3N-01648 CCRCC miRNA-Seq tumor CPT0088550007 56adbedb-e0ac-4910-a409-17cfccd07127_mirnaseq_gdc_realn.bam 190146724 BAM harmonized CPTAC3 32618a38-831a-4317-bcf8-99bd7f1bf27b a2adf895cf38e0ff5fe3e42ae15030b0 {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.RNA-Seq.chimeric.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.chimeric.gdc_realn.bam 65262778 BAM chimeric harmonized CPTAC3 e8abdff5-23dc-404e-a3c2-39e26ee4a2ac 4eca7c47c7cf5145b6d04910798db6ea {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.RNA-Seq.chimeric.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.chimeric.gdc_realn.bam 36497596 BAM chimeric harmonized CPTAC3 e7197e45-afe3-46df-b79c-ab15a7399ab6 6d4ef8bd7aa7ec58fd1d46b381d392c1 {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.RNA-Seq.genomic.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.genomic.gdc_realn.bam 7007394436 BAM genomic harmonized CPTAC3 0bb51a5b-c106-451a-bfaf-278e278fd2b1 8e3d6f8a094918555fc37b720eb380d5 {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.RNA-Seq.genomic.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.genomic.gdc_realn.bam 9444207940 BAM genomic harmonized CPTAC3 b9e16501-2e44-4b48-9525-5a17c88d8baf 4df01c8dd272d6e751081436eae559b0 {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.RNA-Seq.S17_L005_R1.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R1_001.fastq.gz 4240006926 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 24adcbff-dc8f-4a2a-8743-5d5af999a137 ef76cc726694dcea62b25d78678cf85d {"aliquot_tag": "ALQ_fe84817f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.RNA-Seq.S17_L005_R2.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R2_001.fastq.gz 4582286319 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 c6759e84-3d9a-4b41-b56d-027275d0566e cb306f67d09b5f4d28402ed5118704e1 {"aliquot_tag": "ALQ_fe84817f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.RNA-Seq.S7_L008_R1.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R1_001.fastq.gz 3426035225 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 c1eb992a-cd8b-4162-bb59-8445736dd867 220a3f6cf7600331f124101f9a12ad2e {"aliquot_tag": "ALQ_f343e289", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.RNA-Seq.S7_L008_R2.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R2_001.fastq.gz 3670632289 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 d6133ac8-3651-4422-b367-0d4ef7809290 c99cbf0152974aa7c2bf28d61a33b767 {"aliquot_tag": "ALQ_f343e289", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.RNA-Seq.transcriptome.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.transcriptome.gdc_realn.bam 8079394608 BAM transcriptome harmonized CPTAC3 487c5fa4-f521-4649-a43a-0f99800fde5d 378ac7f36ab15a00090069961f89c147 {"aliquot_tag": "ALQ_f343e289", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.RNA-Seq.transcriptome.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.transcriptome.gdc_realn.bam 11909719096 BAM transcriptome harmonized CPTAC3 2ba62195-c367-4e72-952f-1e828a012ee9 019d9a10489baca1da00e453898bfd8a {"aliquot_tag": "ALQ_fe84817f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.WGS.A C3N-01648 CCRCC WGS tissue_normal CPT0088570009 CPT0088570009.WholeGenome.RP-1303.bam 75332671437 BAM submitted_aligned CPTAC3 03e9fe44-c001-442f-8b18-60c8e6d8575e 246bac268aefdef58bfd3fba83116867 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.WGS.A.hg38 C3N-01648 CCRCC WGS tissue_normal CPT0088570009 cd9045bb-8094-4b7f-82bd-791dbd001a66_wgs_gdc_realn.bam 109709800674 BAM harmonized CPTAC3 77144fc9-c29c-431d-a7d1-095e48fe1d15 bf19c14e8fd9438c01327039c675e8f9 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.WGS.N C3N-01648 CCRCC WGS blood_normal CPT0088610002 CPT0088610002.WholeGenome.RP-1303.bam 67154343887 BAM submitted_aligned CPTAC3 84aeea74-f79b-4738-9291-bc259e6b5ebb 6c9d0e89fdd1e9b3f377dc3f14448c33 {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01648.WGS.N.hg38 C3N-01648 CCRCC WGS blood_normal CPT0088610002 e428e790-129f-423c-8de5-bae3d520ac67_gdc_realn.bam 101969955051 BAM harmonized CPTAC3 dadf0fda-f806-4d50-b26c-436158e6dda1 b6ee29f20256e269039034a09a7e0a9e {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01648.WGS.T C3N-01648 CCRCC WGS tumor CPT0088550010 CPT0088550010.WholeGenome.RP-1303.bam 58620003668 BAM submitted_aligned CPTAC3 09d2ffef-d7e5-4500-92a4-239411897784 d9d7e179cd3a45c1baab7ccfefaf6987 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.WGS.T.hg38 C3N-01648 CCRCC WGS tumor CPT0088550010 7140cdaf-a885-49f7-9c26-0d0bc980c94c_gdc_realn.bam 87656261431 BAM harmonized CPTAC3 198264d3-ae63-418c-b771-e91dcd11ae06 abdf866abd8ecc74a8926c1fba0461e6 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.WXS.A C3N-01648 CCRCC WXS tissue_normal CPT0088570009 CPT0088570009.WholeExome.RP-1303.bam 41395214479 BAM submitted_aligned CPTAC3 e793e70d-e3b8-4b51-b622-ac6997972f32 12ea6bf3634548ebfe21d02265816bb2 {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.WXS.A.hg38 C3N-01648 CCRCC WXS tissue_normal CPT0088570009 cd9045bb-8094-4b7f-82bd-791dbd001a66_wxs_gdc_realn.bam 56208751398 BAM harmonized CPTAC3 dbbecd94-5735-47da-963b-6b06f66d217a 0cb17b0177685694574ddf55a4b0096f {"aliquot_tag": "ALQ_63fcff18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01648.WXS.N C3N-01648 CCRCC WXS blood_normal CPT0088610002 CPT0088610002.WholeExome.RP-1303.bam 33807818645 BAM submitted_aligned CPTAC3 882747e2-1474-45cf-a55f-f59682512060 e71e4d7dc45065251173000e96ea7771 {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01648.WXS.N.hg38 C3N-01648 CCRCC WXS blood_normal CPT0088610002 e428e790-129f-423c-8de5-bae3d520ac67_gdc_realn.bam 46390647338 BAM harmonized CPTAC3 3e92258b-a355-410f-a830-db64c0fbbd25 769e895504d99809c010b5b025f310ae {"aliquot_tag": "ALQ_fdfaa19e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01648.WXS.T C3N-01648 CCRCC WXS tumor CPT0088550010 CPT0088550010.WholeExome.RP-1303.bam 34764073069 BAM submitted_aligned CPTAC3 9215ffc9-d177-4874-b2cd-b31862f84c68 bfb7d6684738bd96d4c667db37260539 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01648.WXS.T.hg38 C3N-01648 CCRCC WXS tumor CPT0088550010 7140cdaf-a885-49f7-9c26-0d0bc980c94c_gdc_realn.bam 48496138169 BAM harmonized CPTAC3 777c5406-1c82-414f-8ff9-050677dc7091 3415cb1c06df380d5fc702bd64e5a1d3 {"aliquot_tag": "ALQ_79fb259d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.MethArray.Green.A C3N-01649 CCRCC Methylation_Array tissue_normal CPT0088640009 204930640122_R05C01_Grn.idat 13677965 IDAT Green NA CPTAC3 1b26aa79-687b-4b5e-996c-0cfcd3e683e7 35c6b9cefbde33dc0bde7890399bbc41 {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.MethArray.Green.T C3N-01649 CCRCC Methylation_Array tumor CPT0088630009 202234380050_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d1f0e7df-e958-4028-b5ef-c17a1add0691 739bfc791599117221f468e7b86b9009 {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.MethArray.Red.A C3N-01649 CCRCC Methylation_Array tissue_normal CPT0088640009 204930640122_R05C01_Red.idat 13677965 IDAT Red NA CPTAC3 f92a0548-b7ab-49a9-b10e-68425ffb8190 51d79c00fe4bc4996ea27fc554d3b3cc {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.MethArray.Red.T C3N-01649 CCRCC Methylation_Array tumor CPT0088630009 202234380050_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 22fd25de-69b9-4df6-90a2-439eac4cb79b bd750861fb5e29b0ecacdee5b9fc99cb {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.miRNA-Seq.A.hg38 C3N-01649 CCRCC miRNA-Seq tissue_normal CPT0088640006 8dd24a37-784a-4eac-a697-03500ee819ac_mirnaseq_gdc_realn.bam 221222755 BAM harmonized CPTAC3 e4e06d94-4fb0-45ed-81c7-ef0d1a90afaf 20bf35a8b25fb1f9e3ba2444e02405bb {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.miRNA-Seq.S12_L005_R1.A C3N-01649 CCRCC miRNA-Seq tissue_normal CPT0088640006 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L005_R1_001.unaln.bam 192926944 BAM S12_L005_R1 submitted_unaligned CPTAC3 eb5ea772-0719-4d3a-b0ec-30f79bb33eb6 a37bd45909a5cf0e28645c0d4847c2fc {"aliquot_tag": "ALQ_3277eaf7", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.miRNA-Seq.S30_L008_R1.T C3N-01649 CCRCC miRNA-Seq tumor CPT0088630006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAGATC_S30_L008_R1_001.unaln.bam 280262748 BAM S30_L008_R1 submitted_unaligned CPTAC3 3e180b47-0d0e-446f-b752-b93f4ae93043 5310c78feef4737e80ade708df741170 {"aliquot_tag": "ALQ_805736e7", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.miRNA-Seq.T.hg38 C3N-01649 CCRCC miRNA-Seq tumor CPT0088630006 117223ec-83d6-49ca-a128-6727c4ba1953_mirnaseq_gdc_realn.bam 306528815 BAM harmonized CPTAC3 758731cd-26a1-4ef5-98f4-fe76027da0e9 f65d329fa0fcc5bf9d26e1ac1990db4b {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.RNA-Seq.chimeric.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.chimeric.gdc_realn.bam 87264765 BAM chimeric harmonized CPTAC3 5d35fae3-fd52-4002-9403-b560d6b14371 e363c1a62f6b2a7be0248953a0bd5c14 {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.RNA-Seq.chimeric.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.chimeric.gdc_realn.bam 51732305 BAM chimeric harmonized CPTAC3 397d1a29-c691-4174-a9dd-73b22b44fa16 644e5433a7370222504b9bd81d058f2d {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.RNA-Seq.genomic.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.genomic.gdc_realn.bam 8099689166 BAM genomic harmonized CPTAC3 a97bead8-cdf4-4d5b-9368-9b6da347967c 3ca5b57cd3edb06afa009e31575cced1 {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.RNA-Seq.genomic.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.genomic.gdc_realn.bam 7988536240 BAM genomic harmonized CPTAC3 26f0c8bf-3383-45e9-9435-8b01c9005dfd 92e17939bb6bf3f18dcbe67dd1b9b71b {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.RNA-Seq.S10_L003_R1.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 4104281655 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 244632b6-4344-40a5-a109-1722407dcac7 eaade7d5a3c454ee497ba5e58566be32 {"aliquot_tag": "ALQ_3277eaf7", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.RNA-Seq.S10_L003_R2.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4343477631 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 904e8d63-793c-47d7-827d-dd70047ad802 3222a596a7dd8e4d9348ec070f927c91 {"aliquot_tag": "ALQ_3277eaf7", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.RNA-Seq.S13_L004_R1.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R1_001.fastq.gz 4059212713 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 54772596-255c-4ee9-8c6d-ada8cd925b89 c685dcd5210dc4131fef0d0402c8229c {"aliquot_tag": "ALQ_805736e7", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.RNA-Seq.S13_L004_R2.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4501956761 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 2669c684-bde7-49eb-8441-0500102d3b9b 98190d505ad6c8691e8ad0cdf686196a {"aliquot_tag": "ALQ_805736e7", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.RNA-Seq.transcriptome.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.transcriptome.gdc_realn.bam 10017547042 BAM transcriptome harmonized CPTAC3 9608561c-63d5-44c4-83eb-0c575b5968a2 6ba4b8d7b48ee030dba6b3abe27d3b8b {"aliquot_tag": "ALQ_3277eaf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.RNA-Seq.transcriptome.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.transcriptome.gdc_realn.bam 10554330597 BAM transcriptome harmonized CPTAC3 26c75255-cfd8-4c70-bc66-d450a4392463 a7968c35f131ec856c363f1d58b46492 {"aliquot_tag": "ALQ_805736e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.WGS.A C3N-01649 CCRCC WGS tissue_normal CPT0088640009 CPT0088640009.WholeGenome.RP-1303.bam 59421941243 BAM submitted_aligned CPTAC3 4ddd5eff-c02d-47c5-ae99-f3a15e354ea7 4dc750f6163e12aabe0c979364bedbe5 {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.WGS.A.hg38 C3N-01649 CCRCC WGS tissue_normal CPT0088640009 33e1c462-fff2-4bcd-ba25-a3c1ba770079_wgs_gdc_realn.bam 86512012446 BAM harmonized CPTAC3 16d0b7b6-30b7-444d-b55b-429b871faf8d 058e0f601616972cc989c641cd01fc9e {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.WGS.N C3N-01649 CCRCC WGS blood_normal CPT0088680009 CPT0088680009.WholeGenome.RP-1303.bam 61478418412 BAM submitted_aligned CPTAC3 112d0a12-754c-44e2-a6bb-d1e2b0de5885 afb1171e1cf74be2de7eec9e5d0fa291 {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01649.WGS.N.hg38 C3N-01649 CCRCC WGS blood_normal CPT0088680009 a5ca7e98-11b8-4706-89ce-62af51a2be90_wgs_gdc_realn.bam 90855999099 BAM harmonized CPTAC3 49a06caa-ed92-47e4-87a4-43e380aae269 3c43e333c8537df855e0fca6c407ac2f {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01649.WGS.T C3N-01649 CCRCC WGS tumor CPT0088630009 CPT0088630009.WholeGenome.RP-1303.bam 64973149376 BAM submitted_aligned CPTAC3 5f85dfc4-9dd1-49c4-814d-5030cfbe0143 f0ed0db457c26868e8752fc19243e1aa {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.WGS.T.hg38 C3N-01649 CCRCC WGS tumor CPT0088630009 ab86dbf3-c573-4c06-8d7e-174b15794c45_wgs_gdc_realn.bam 96652426081 BAM harmonized CPTAC3 ae581e44-38bc-416a-9f14-b2be69bbee3d 0ac3e9e499127cbcaeb5caf5a8920c1d {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.WXS.A C3N-01649 CCRCC WXS tissue_normal CPT0088640009 CPT0088640009.WholeExome.RP-1303.bam 35602935263 BAM submitted_aligned CPTAC3 c881268c-c1e5-4803-ba10-64f03f3fdced 54ec9311fbea5a1d9314f503545d4728 {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.WXS.A.hg38 C3N-01649 CCRCC WXS tissue_normal CPT0088640009 33e1c462-fff2-4bcd-ba25-a3c1ba770079_wxs_gdc_realn.bam 47837630124 BAM harmonized CPTAC3 ec5d794a-fedc-4fc4-91ce-9fe1eb7af0a8 7490a699781001e7578cd2754ca6014d {"aliquot_tag": "ALQ_a2c8f766", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01649.WXS.N C3N-01649 CCRCC WXS blood_normal CPT0088680009 CPT0088680009.WholeExome.RP-1303.bam 29134914773 BAM submitted_aligned CPTAC3 9c91aa54-a11b-4316-a8a9-3aa38aa09771 b4ac831ea48b3d81eb2aae1846abd1e4 {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01649.WXS.N.hg38 C3N-01649 CCRCC WXS blood_normal CPT0088680009 a5ca7e98-11b8-4706-89ce-62af51a2be90_wxs_gdc_realn.bam 39730112471 BAM harmonized CPTAC3 1b58c4a9-0dc9-4e19-847b-af742866b085 6fced3418388935261204860682f700e {"aliquot_tag": "ALQ_67381a67", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01649.WXS.T C3N-01649 CCRCC WXS tumor CPT0088630009 CPT0088630009.WholeExome.RP-1303.bam 46195067788 BAM submitted_aligned CPTAC3 e8e6b393-a65b-43c9-982b-7910b5b55eac d5dee1c63f775ad6f78014e929a58381 {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01649.WXS.T.hg38 C3N-01649 CCRCC WXS tumor CPT0088630009 ab86dbf3-c573-4c06-8d7e-174b15794c45_wxs_gdc_realn.bam 62659439442 BAM harmonized CPTAC3 e01248a5-b0fa-464b-bb61-ad81af937ac4 0e7ebde667e95d8f79dd00d63110bf7c {"aliquot_tag": "ALQ_10e82b76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01650.MethArray.Green.A C3N-01650 CCRCC Methylation_Array tissue_normal CPT0380430009 205589730156_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ccdcd2a9-23f6-4e6c-810e-805a8dcbfa0b 4daf7cd79c70e8b19ae0a008fda9a0d3 {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.MethArray.Green.T C3N-01650 CCRCC Methylation_Array tumor CPT0380400009 205549600082_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b1f990f6-f376-403e-9992-b82e7d2f2537 e96c207037038c3510b323f721701580 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.MethArray.Red.A C3N-01650 CCRCC Methylation_Array tissue_normal CPT0380430009 205589730156_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 a91cd0b8-4229-4260-86fe-d6f2e858c15b edd83ba206698297bf5e2cc9eec032ad {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.MethArray.Red.T C3N-01650 CCRCC Methylation_Array tumor CPT0380400009 205549600082_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 13c0f1aa-1743-497c-abbf-f96639e56391 b1ffbe9cd220d7943cfad7b76f196ef2 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.miRNA-Seq.A.hg38 C3N-01650 CCRCC miRNA-Seq tissue_normal CPT0380430006 9bfa6638-4622-4f14-9d5e-e7fa1b4d7af2_mirnaseq_gdc_realn.bam 296165335 BAM harmonized CPTAC3 a4242f01-8426-4e71-a125-a899d7dbb213 976f87945d0657947023b0dcdb6680bc {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.miRNA-Seq.S42_L003_R1.A C3N-01650 CCRCC miRNA-Seq tissue_normal CPT0380430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAGATC_S42_L003_R1_001.unaln.bam 267693918 BAM S42_L003_R1 submitted_unaligned CPTAC3 f9c37abd-50cf-4075-a71e-a45b42f24f06 fa59fabe7d4e3384e901676d89923602 {"aliquot_tag": "ALQ_c7fde54e", "sample": "S42", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.miRNA-Seq.S45_L003_R1.T C3N-01650 CCRCC miRNA-Seq tumor CPT0380400006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GCCAAT_S45_L003_R1_001.unaln.bam 304111463 BAM S45_L003_R1 submitted_unaligned CPTAC3 08be98f6-956e-460e-891c-919092233557 9a2e3dbd24833c649a0bc8e83d9cd234 {"aliquot_tag": "ALQ_805d9f9e", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.miRNA-Seq.T.hg38 C3N-01650 CCRCC miRNA-Seq tumor CPT0380400006 6f2065ab-0168-43ea-b54e-3fa1b5fdf165_mirnaseq_gdc_realn.bam 333061547 BAM harmonized CPTAC3 7abf3a33-5078-49ac-91f3-e68c9ec1be49 232816d200631564b29ee0c435a94f96 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.REP_b9c58330.WGS.N C3N-01650 CCRCC WGS blood_normal CPT0405290002 CPT0405290002.WholeGenome.RP-2158.bam 30822501470 BAM submitted_aligned CPTAC3 dd1e8570-14d4-4844-9d12-686e060081e1 fdae4acfe4e0b40692a17149f77806d4 {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01650.REP_b9c58330.WGS.N.hg38 C3N-01650 CCRCC WGS blood_normal CPT0405290002 8cac4a04-a819-4b46-9a3f-6c5253adfead_wgs_gdc_realn.bam 92130625198 BAM harmonized CPTAC3 bb22ed95-d227-4799-b7fa-a89ba5e14e6a f78fc93daaf07b344924b92241033926 {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01650.REP_b9c58330.WXS.N C3N-01650 CCRCC WXS blood_normal CPT0405290002 CPT0405290002.WholeExome.RP-1303.bam 24270791634 BAM submitted_aligned CPTAC3 25a8f704-b312-4ffe-98cb-0f01a1e82a99 41d557b2410d8d37c9cbbf36e27b593a {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01650.REP_b9c58330.WXS.N.hg38 C3N-01650 CCRCC WXS blood_normal CPT0405290002 8cac4a04-a819-4b46-9a3f-6c5253adfead_wxs_gdc_realn.bam 33441333356 BAM harmonized CPTAC3 3746b654-54f1-4e28-a9a8-c90efb7910fc 9550e93d2156e5e2ce96dcded4a82913 {"aliquot_tag": "REP_b9c58330", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01650.RNA-Seq.chimeric.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.chimeric.gdc_realn.bam 187551074 BAM chimeric harmonized CPTAC3 a4fe1589-770a-4d24-a308-257065152c30 c499574d1a5ddda2704feacd3b02ddaa {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.RNA-Seq.chimeric.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.chimeric.gdc_realn.bam 221351059 BAM chimeric harmonized CPTAC3 4cdb2abe-e810-45ac-b915-543bfe29a209 b604aa9a113f0ae9d1e1b6a314d680b3 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.RNA-Seq.genomic.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.genomic.gdc_realn.bam 10506503109 BAM genomic harmonized CPTAC3 630e4381-7a26-41bf-aadc-1d52d534261a 713d62d94535b6f49e4eb600eac00b1f {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.RNA-Seq.genomic.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.genomic.gdc_realn.bam 9199312598 BAM genomic harmonized CPTAC3 8dcd0a73-4f87-4cd5-943a-74f9fda3577b 9e1ba7e880c55e60129535fad009c1c9 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.RNA-Seq.S2_L001_R1.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 5245546118 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 e1f86a4f-679d-43c4-808c-52b6b50136fa 4a37afce687375ef0e260c3762c17c0f {"aliquot_tag": "ALQ_c7fde54e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.RNA-Seq.S2_L001_R2.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 5938717101 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 740adb26-90b7-4c14-830f-34471fc12d5f 9d0636d2e438a06af69b3127add49b17 {"aliquot_tag": "ALQ_c7fde54e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.RNA-Seq.S3_L001_R1.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 4423994673 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 d50b8cfe-8a29-43c2-84d9-33bcb19e5e0b 82755b62bc3ed210ee9b467752b06beb {"aliquot_tag": "ALQ_805d9f9e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.RNA-Seq.S3_L001_R2.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 5036629853 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 c1ca4303-338e-49b1-b3ef-d1c53ad1e996 554be517a5523bba8576946f1063b17c {"aliquot_tag": "ALQ_805d9f9e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.RNA-Seq.transcriptome.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.transcriptome.gdc_realn.bam 12538976935 BAM transcriptome harmonized CPTAC3 62133981-2025-45a4-8704-56ba987e5874 39577cfc312f3de02c62964b60a26cd3 {"aliquot_tag": "ALQ_c7fde54e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.RNA-Seq.transcriptome.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.transcriptome.gdc_realn.bam 12307207647 BAM transcriptome harmonized CPTAC3 c7a8fb43-dae0-4831-8d09-842ff15b93d5 687f0b294d89444375565d6c9cc44245 {"aliquot_tag": "ALQ_805d9f9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.WGS.T C3N-01650 CCRCC WGS tumor CPT0380400009 CPT0380400009.WholeGenome.RP-2158.bam 33958855932 BAM submitted_aligned CPTAC3 b9e32941-e0f1-48ad-9894-f6ede04d846d 5b8f5837718235b37f39134c2050ea76 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.WGS.T.hg38 C3N-01650 CCRCC WGS tumor CPT0380400009 83d01696-846d-4d55-8727-fe99cace5077_wgs_gdc_realn.bam 102351745528 BAM harmonized CPTAC3 65b7bf65-9bb3-4d0c-a205-24c0be5c0fb1 950a388e50c7ab874a295210114b2dd5 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.WXS.A C3N-01650 CCRCC WXS tissue_normal CPT0380430009 CPT0380430009.WholeExome.RP-1303.bam 23116301738 BAM submitted_aligned CPTAC3 7a5ea787-8b09-4f48-bcac-65c3a6470de8 855d368f3bb8f17984dd62061dec8ac7 {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01650.WXS.A.hg38 C3N-01650 CCRCC WXS tissue_normal CPT0380430009 36950092-de15-4ece-a714-9bf64a051429_wxs_gdc_realn.bam 31729390305 BAM harmonized CPTAC3 09909ee0-682d-4fc3-9b67-bb6192bc3a6b 53128ab9db592bb42bc7ac9260e85198 {"aliquot_tag": "ALQ_5742f8df", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01650.WXS.T C3N-01650 CCRCC WXS tumor CPT0380400009 CPT0380400009.WholeExome.RP-1303.bam 21551619374 BAM submitted_aligned CPTAC3 ef003874-6376-4fd6-9d77-e5bb1c84d150 22e100a4a18d043aa5b171ec8ed570b6 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01650.WXS.T.hg38 C3N-01650 CCRCC WXS tumor CPT0380400009 83d01696-846d-4d55-8727-fe99cace5077_wxs_gdc_realn.bam 29826762816 BAM harmonized CPTAC3 0191f870-6fa3-4dc0-8f2f-a48ae057b813 b5420dcb870c11d0390311e3043a5507 {"aliquot_tag": "ALQ_10e2820f", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01651.MethArray.Green.A C3N-01651 CCRCC Methylation_Array tissue_normal CPT0088710009 204930640041_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7691f6c2-f580-4c00-a0d6-ffb9c12bc0f7 2ad0dff0e8ed6b07ba7fddaa43df2498 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.MethArray.Green.T C3N-01651 CCRCC Methylation_Array tumor CPT0088690009 202176290145_R05C01_Grn.idat 13676225 IDAT Green NA CPTAC3 4665466b-9645-4728-b73e-ef0d79234982 f559f1cdeaeaa652efb01da728e44296 {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.MethArray.Red.A C3N-01651 CCRCC Methylation_Array tissue_normal CPT0088710009 204930640041_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 9941cd16-8286-4c6e-9919-47da543f4841 6107865a82786c4051e6f1f3f1c795c2 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.MethArray.Red.T C3N-01651 CCRCC Methylation_Array tumor CPT0088690009 202176290145_R05C01_Red.idat 13676225 IDAT Red NA CPTAC3 8cdd683a-2ce8-4ad7-b5b0-27d480a3e9f9 5399f4f7488703a5db1523ae7d2808be {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.miRNA-Seq.A.hg38 C3N-01651 CCRCC miRNA-Seq tissue_normal CPT0088710006 f5ef4535-3700-4dd1-b2e3-7460e6bcadab_mirnaseq_gdc_realn.bam 251241582 BAM harmonized CPTAC3 cec029e8-f77b-4a96-af85-1ada21ec736c 3a4a53ea86f1d236f742908d0b2d6fe2 {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.miRNA-Seq.S15_L006_R1.T C3N-01651 CCRCC miRNA-Seq tumor CPT0088690006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L006_R1_001.unaln.bam 185183702 BAM S15_L006_R1 submitted_unaligned CPTAC3 37925823-beae-4017-99eb-e3b952e4b9b1 cbbeb1a4d1b096277885608719ae8ef5 {"aliquot_tag": "ALQ_cae72e46", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.miRNA-Seq.S31_L002_R1.A C3N-01651 CCRCC miRNA-Seq tissue_normal CPT0088710006 181108_UNC31-K00269_0163_BH23TVBBXY_CACGAT_S31_L002_R1_001.unaln.bam 224711762 BAM S31_L002_R1 submitted_unaligned CPTAC3 fd55b689-eb61-4a21-981d-6d1f29954098 df605783dd5eb34dd8a0638ee5894656 {"aliquot_tag": "ALQ_31cbb622", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.miRNA-Seq.T.hg38 C3N-01651 CCRCC miRNA-Seq tumor CPT0088690006 51d0c04a-5324-41dd-abc1-9d1d7b735037_mirnaseq_gdc_realn.bam 206614715 BAM harmonized CPTAC3 c684d1d6-4796-4781-8e09-8d12175d8eb7 2a3d036c34a8b4b40c5d54823c67c32d {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.RNA-Seq.chimeric.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.chimeric.gdc_realn.bam 55566451 BAM chimeric harmonized CPTAC3 6e3cd892-9b86-467a-91a5-102a1c0257e5 ef2cb4d39a7c8cf66b1e59c481e68bda {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.RNA-Seq.chimeric.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.chimeric.gdc_realn.bam 38473165 BAM chimeric harmonized CPTAC3 759f31e9-0e34-4f98-8e92-9171fa5d5e5b 52165df4eccd53dcea42a3327178e60a {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.RNA-Seq.genomic.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.genomic.gdc_realn.bam 5696632456 BAM genomic harmonized CPTAC3 95b68166-fd8d-4f44-8b24-1c80a0ad30c9 1b835ebe8ad53b573a530d9afa944cae {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.RNA-Seq.genomic.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.genomic.gdc_realn.bam 7965233080 BAM genomic harmonized CPTAC3 2e0ba60b-de5f-4894-a560-136d15f9c382 a14f0160614ad6cfb31bc2bb9910e5f5 {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.RNA-Seq.S20_L005_R1.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R1_001.fastq.gz 3824566082 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 561ecf0d-8c91-42da-801f-1e4ee18dfb1e 632458fd06fc63c95d41373119ec0e31 {"aliquot_tag": "ALQ_cae72e46", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.RNA-Seq.S20_L005_R2.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R2_001.fastq.gz 4129283637 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 0df3e0d9-4773-48d7-833b-e21828efec13 dc573641d2b4fb78ac8294a71ddef0f4 {"aliquot_tag": "ALQ_cae72e46", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.RNA-Seq.S6_L008_R1.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R1_001.fastq.gz 2920856846 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 544230d7-1e21-48c7-a50a-63a7325a5ee7 83d1163475edc4cb26abf2b587a85726 {"aliquot_tag": "ALQ_31cbb622", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.RNA-Seq.S6_L008_R2.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R2_001.fastq.gz 3114725417 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 b76c5d05-3176-4844-bb1d-23f6274a8d6e 86b650a17ab7626e88f951b640c369e8 {"aliquot_tag": "ALQ_31cbb622", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.RNA-Seq.transcriptome.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.transcriptome.gdc_realn.bam 7172929753 BAM transcriptome harmonized CPTAC3 d70b95a5-c209-400f-ad72-adb18aa1f7d9 4693ce21ea12ca3d703252725e665b13 {"aliquot_tag": "ALQ_31cbb622", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.RNA-Seq.transcriptome.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.transcriptome.gdc_realn.bam 10824996041 BAM transcriptome harmonized CPTAC3 d8f7350b-3b18-4bbd-bf69-55bce4db41ab 7ea3f2f51ba999ba9f36562ba7b4e1bc {"aliquot_tag": "ALQ_cae72e46", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.WGS.A C3N-01651 CCRCC WGS tissue_normal CPT0088710009 CPT0088710009.WholeGenome.RP-1303.bam 54319081040 BAM submitted_aligned CPTAC3 a3e54617-25f9-4563-bfcb-aeb65ab5c885 339fc010ca89481135c6e92c7ec4b52f {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.WGS.A.hg38 C3N-01651 CCRCC WGS tissue_normal CPT0088710009 3e7a7d63-b88d-44b2-8580-0b860022b87e_wgs_gdc_realn.bam 80175507589 BAM harmonized CPTAC3 b5ffbad8-e18f-4a0d-95ff-ae6fe95e072d 5e6f4b0e37ae088e17df3e0c451da370 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.WGS.N C3N-01651 CCRCC WGS blood_normal CPT0088750002 CPT0088750002.WholeGenome.RP-1303.bam 74558215035 BAM submitted_aligned CPTAC3 34b8fb40-947c-477d-8f71-ef40fbb522e6 78a04b418f392658532856de79dba4e5 {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01651.WGS.N.hg38 C3N-01651 CCRCC WGS blood_normal CPT0088750002 31732a1d-3a09-4d65-87ce-cf4a7e928909_gdc_realn.bam 113075757608 BAM harmonized CPTAC3 ac1a3515-d536-4d2c-a6d4-fdf24045da76 0eb4ea7dd9647840dd939c9997daf48d {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01651.WGS.T C3N-01651 CCRCC WGS tumor CPT0088690009 CPT0088690009.WholeGenome.RP-1303.bam 57600727599 BAM submitted_aligned CPTAC3 3522a83c-34dc-4387-9628-eb4767a24cc5 99b04e7e84acaf0ee9566e2321261092 {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.WGS.T.hg38 C3N-01651 CCRCC WGS tumor CPT0088690009 a5c7bfd1-43cf-4e91-b10a-7598ebd4345e_gdc_realn.bam 86595257571 BAM harmonized CPTAC3 66120515-c1cc-49fc-9764-2548e27ead6e 984a2fc7adeb358fdf91404ac435498c {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.WXS.A C3N-01651 CCRCC WXS tissue_normal CPT0088710009 CPT0088710009.WholeExome.RP-1303.bam 38436561557 BAM submitted_aligned CPTAC3 2cd8566f-d069-4e4e-8fa1-4732a10086cb b6cddd9df6a8920effdfe5e537e486a8 {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.WXS.A.hg38 C3N-01651 CCRCC WXS tissue_normal CPT0088710009 3e7a7d63-b88d-44b2-8580-0b860022b87e_wxs_gdc_realn.bam 51810703953 BAM harmonized CPTAC3 68bb7588-c46b-4dca-a436-834a76fabcec 0524aee6423a50347e4f6c2ccb4d06df {"aliquot_tag": "ALQ_a174abb3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01651.WXS.N C3N-01651 CCRCC WXS blood_normal CPT0088750002 CPT0088750002.WholeExome.RP-1303.bam 30122260329 BAM submitted_aligned CPTAC3 a49c73a9-a512-4987-9f0f-bb1b0721a2f2 ff5bb3364bbb6618f610f58be9b2a0e8 {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01651.WXS.N.hg38 C3N-01651 CCRCC WXS blood_normal CPT0088750002 31732a1d-3a09-4d65-87ce-cf4a7e928909_gdc_realn.bam 40526111145 BAM harmonized CPTAC3 2c2397ce-5c4f-4399-b1ab-0d3b936ae43b 36b00a5319cbdfc388e2273979193f66 {"aliquot_tag": "ALQ_c326d4fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01651.WXS.T C3N-01651 CCRCC WXS tumor CPT0088690009 CPT0088690009.WholeExome.RP-1303.bam 28704959722 BAM submitted_aligned CPTAC3 5899f065-16de-4efe-9e59-9c75825e1ddc a2b4c4c83043795cc9d3b1a7aa46ee79 {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01651.WXS.T.hg38 C3N-01651 CCRCC WXS tumor CPT0088690009 a5c7bfd1-43cf-4e91-b10a-7598ebd4345e_gdc_realn.bam 39691868519 BAM harmonized CPTAC3 3f709912-5a0d-466e-bd8e-dba791b2c7d4 5f988f562292644ab37d98a42fb43a3c {"aliquot_tag": "ALQ_5a5833d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01652.MethArray.Green.A C3N-01652 CCRCC Methylation_Array tissue_normal CPT0380700009 205555390118_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 87cc9931-8630-42ed-9d8d-ce001aea59c7 6a08b701351ba25c8b85d573bcf2d0d2 {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.MethArray.Green.T C3N-01652 CCRCC Methylation_Array tumor CPT0380690009 205555390118_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 73e0c2fc-2f3d-40ef-bf4c-bab8f77e845b 65cce39a09d4f3b1d5e4239f0c217adb {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.MethArray.Red.A C3N-01652 CCRCC Methylation_Array tissue_normal CPT0380700009 205555390118_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 d133a053-060d-49ad-9faa-5f3fd0634e9b 6f4ebe6e884ff83cf977a41f8f0feba9 {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.MethArray.Red.T C3N-01652 CCRCC Methylation_Array tumor CPT0380690009 205555390118_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 f93346c3-e7c4-434e-ad63-ff497c6e5021 c61d2aafc8c26f3f56b41f7ce2bfd994 {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.miRNA-Seq.A.hg38 C3N-01652 CCRCC miRNA-Seq tissue_normal CPT0380700006 e8753f58-bb84-411e-91b0-28f44eabf26f_mirnaseq_gdc_realn.bam 294454593 BAM harmonized CPTAC3 1ac3a087-3ace-42b4-b85a-8699730d804c 8fbf52923658154b2a11398e40a20694 {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.miRNA-Seq.S40_L003_R1.T C3N-01652 CCRCC miRNA-Seq tumor CPT0380690006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACTTGA_S40_L003_R1_001.unaln.bam 268565396 BAM S40_L003_R1 submitted_unaligned CPTAC3 18fa473e-bae5-4fa2-84fe-b8a8337f8994 6445547f37ce6d06f73e5815e8e49c6b {"aliquot_tag": "ALQ_c0855ce4", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.miRNA-Seq.S44_L003_R1.A C3N-01652 CCRCC miRNA-Seq tissue_normal CPT0380700006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GATCAG_S44_L003_R1_001.unaln.bam 274601028 BAM S44_L003_R1 submitted_unaligned CPTAC3 6ab93104-2f6b-4071-a88c-b2c9e2a349ae c774a905e51f4c7c45a911f62bd95501 {"aliquot_tag": "ALQ_6c9ed30", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.miRNA-Seq.T.hg38 C3N-01652 CCRCC miRNA-Seq tumor CPT0380690006 a74b4047-1d96-4ac9-aa1e-dbe81e713ff7_mirnaseq_gdc_realn.bam 282587361 BAM harmonized CPTAC3 6f2908a8-b28a-4d97-a8d7-767533805916 85ad5f8193be527780964d99dc7d5f2d {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.RNA-Seq.chimeric.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.chimeric.gdc_realn.bam 366703286 BAM chimeric harmonized CPTAC3 282a4e42-8baa-4d5a-90a1-477cdc41814b d387f80d342e35b2decd7c6e585fa93f {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.RNA-Seq.chimeric.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.chimeric.gdc_realn.bam 146250034 BAM chimeric harmonized CPTAC3 17175688-34bb-49b8-8531-7bc54c76487b 44fd109b1ec424e38c60e8f749831956 {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.RNA-Seq.genomic.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.genomic.gdc_realn.bam 9435855583 BAM genomic harmonized CPTAC3 6ec7df9c-37aa-4729-8304-9bb478b8fdbb 14039072aa71ac109f4b4872713e801d {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.RNA-Seq.genomic.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.genomic.gdc_realn.bam 7768995947 BAM genomic harmonized CPTAC3 9369b2ff-f7c4-4e67-aece-0a611150e525 9d490d8aa142f10e9b7d3e104dce92bb {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.RNA-Seq.S25_L007_R1.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 4425954728 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 3d182edc-0025-4c5e-a113-ab8f455c5809 653ed7abeb131383d0c03e4c773cad48 {"aliquot_tag": "ALQ_6c9ed30", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.RNA-Seq.S25_L007_R2.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 5069312587 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 00ffe329-b3bf-4a6b-9c31-e446cb678e3d f41374c2b9ded4fc8ee2a1a534c2d44f {"aliquot_tag": "ALQ_6c9ed30", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.RNA-Seq.S57_L007_R1.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R1_001.fastq.gz 3915278210 FASTQ S57_L007_R1 submitted_unaligned CPTAC3 5531d428-ed75-411a-a7cc-860070f0ede6 27332eb0d1bc8d0019e750d68929e690 {"aliquot_tag": "ALQ_c0855ce4", "sample": "S57", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.RNA-Seq.S57_L007_R2.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R2_001.fastq.gz 4368979670 FASTQ S57_L007_R2 submitted_unaligned CPTAC3 2374872f-af06-41f2-a331-682d4635d9e3 5df810ec68870455e791c37d6846cd2d {"aliquot_tag": "ALQ_c0855ce4", "sample": "S57", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.RNA-Seq.transcriptome.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.transcriptome.gdc_realn.bam 11410332152 BAM transcriptome harmonized CPTAC3 07fa5e4f-b1d0-41db-a3d8-62c92bb8dbea fd10a243b747c8f05664a12b3a3a20c2 {"aliquot_tag": "ALQ_6c9ed30", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.RNA-Seq.transcriptome.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.transcriptome.gdc_realn.bam 10454749291 BAM transcriptome harmonized CPTAC3 b932defa-0152-4bcd-b1cf-529042d57a30 a5cf5b1e6627d177f59bf73de9a112f5 {"aliquot_tag": "ALQ_c0855ce4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.WGS.N C3N-01652 CCRCC WGS blood_normal CPT0380810002 CPT0380810002.WholeGenome.RP-2158.bam 21792366946 BAM submitted_aligned CPTAC3 bdb9668e-5bae-43eb-95de-eb9680f4beea d301a800e3309183bcfb03816663c9fe {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01652.WGS.N.hg38 C3N-01652 CCRCC WGS blood_normal CPT0380810002 af1f4ba7-d2eb-4086-a06c-3dbc0806194a_wgs_gdc_realn.bam 65581268711 BAM harmonized CPTAC3 972aeb18-fa61-4f48-bbb8-f386ca2c2f57 52f7bf60b0eddfcc6be03f5c861c84b2 {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01652.WGS.T C3N-01652 CCRCC WGS tumor CPT0380690009 CPT0380690009.WholeGenome.RP-2158.bam 27636981463 BAM submitted_aligned CPTAC3 ff9ab466-1145-42e6-9400-e8bc46cdce6e 07464e289badaa5b012728f811f9dc91 {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.WGS.T.hg38 C3N-01652 CCRCC WGS tumor CPT0380690009 64abc2d4-1102-4b31-80e8-5977b0e661f1_wgs_gdc_realn.bam 80611922473 BAM harmonized CPTAC3 2a89a515-249d-41bd-b127-0bee9675317d ae23c5415be8544b8f794ff82327170e {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.WXS.A C3N-01652 CCRCC WXS tissue_normal CPT0380700009 CPT0380700009.WholeExome.RP-1303.bam 29731885130 BAM submitted_aligned CPTAC3 50c47f2a-e051-44a0-a38f-41c167de2c3b 819e6a7e9ff698f3d4c8916467c3110f {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01652.WXS.A.hg38 C3N-01652 CCRCC WXS tissue_normal CPT0380700009 d654c888-56e8-41e1-8a1a-c3b4067e0504_wxs_gdc_realn.bam 40441398331 BAM harmonized CPTAC3 0c51d4c3-b9c3-439f-b80e-a697f4c88a2a feb24a8c5b995200142d7a1229903b07 {"aliquot_tag": "ALQ_9676f0a1", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01652.WXS.N C3N-01652 CCRCC WXS blood_normal CPT0380810002 CPT0380810002.WholeExome.RP-1303.bam 22288494034 BAM submitted_aligned CPTAC3 d8f8108a-a4cc-4694-adf4-47ea44f9d2da fcdc24145b32a3bf5cfa415f3662a05c {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01652.WXS.N.hg38 C3N-01652 CCRCC WXS blood_normal CPT0380810002 af1f4ba7-d2eb-4086-a06c-3dbc0806194a_wxs_gdc_realn.bam 30717417411 BAM harmonized CPTAC3 16f5b6cb-11a9-419d-a24d-095a783303e1 0ab974c1a423931c67ce09b82142b45d {"aliquot_tag": "ALQ_cd92b24c", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01652.WXS.T C3N-01652 CCRCC WXS tumor CPT0380690009 CPT0380690009.WholeExome.RP-1303.bam 24587053584 BAM submitted_aligned CPTAC3 4f65e2b6-b95e-4463-95b9-fcfb1f8fc9cb 7a898f21d5ca7ba2c5ff7859b70cac6c {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01652.WXS.T.hg38 C3N-01652 CCRCC WXS tumor CPT0380690009 64abc2d4-1102-4b31-80e8-5977b0e661f1_wxs_gdc_realn.bam 33421971477 BAM harmonized CPTAC3 b6c98d23-651d-4748-ba8d-d06de8785fb3 0c419b2e76ae67d79eacf87dccd3a200 {"aliquot_tag": "ALQ_503a4175", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01653.MethArray.Green.A C3N-01653 CCRCC Methylation_Array tissue_normal CPT0380900009 205549600082_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 91b77284-2a3b-429f-b584-f7b00978e0bd f1b18aa3ccf2c96b201ed16d0e7e50f0 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.MethArray.Green.T C3N-01653 CCRCC Methylation_Array tumor CPT0380840009 205549600082_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6609e7f5-1fc4-4c32-b139-0228606f3172 88f420f093a8b3bc23ef5f265ba10a4b {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.MethArray.Red.A C3N-01653 CCRCC Methylation_Array tissue_normal CPT0380900009 205549600082_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 49b49607-78eb-441d-8cad-3b2fd6ed2ce7 c5291e20f4cc1e1cf1299338b993da22 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.MethArray.Red.T C3N-01653 CCRCC Methylation_Array tumor CPT0380840009 205549600082_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 5d15aa15-ab1b-41e4-84d6-742686cfb849 0fab80235a3815c6fbd525792e38c46e {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.miRNA-Seq.A.hg38 C3N-01653 CCRCC miRNA-Seq tissue_normal CPT0380900006 70218468-7051-4fb1-9cad-87224510ef8f_mirnaseq_gdc_realn.bam 432308639 BAM harmonized CPTAC3 9b9eaf88-1670-4359-84fb-56cbfbf84250 7a4906aeb79c81c196e9761627d61587 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.miRNA-Seq.S38_L003_R1.T C3N-01653 CCRCC miRNA-Seq tumor CPT0380840006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGGCA_S38_L003_R1_001.unaln.bam 259028873 BAM S38_L003_R1 submitted_unaligned CPTAC3 6bc121fb-7b69-440c-aa70-9b5abd011bbe 0ff440183a781ec004a0f3de7c9a379d {"aliquot_tag": "ALQ_21ff925", "sample": "S38", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.miRNA-Seq.S46_L003_R1.A C3N-01653 CCRCC miRNA-Seq tissue_normal CPT0380900006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAGCTT_S46_L003_R1_001.unaln.bam 400364560 BAM S46_L003_R1 submitted_unaligned CPTAC3 d819b735-7ac5-4a76-b6b4-f164b571ca45 5d66d9f1617260a9acd9e61b4fdfb5b0 {"aliquot_tag": "ALQ_3cc38c40", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.miRNA-Seq.T.hg38 C3N-01653 CCRCC miRNA-Seq tumor CPT0380840006 1a4d878d-638c-411b-b3bb-e4215e72ea74_mirnaseq_gdc_realn.bam 275427963 BAM harmonized CPTAC3 e0deee0c-2d07-4339-b69a-bce74787ae1e 54ee03e31eae201b619770b3169a5fb6 {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.RNA-Seq.chimeric.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.chimeric.gdc_realn.bam 375300742 BAM chimeric harmonized CPTAC3 f766de46-9037-4725-ae1c-fd18f5fe18a4 e3d0881a469f2db4d0182378fc3acf01 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.RNA-Seq.chimeric.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.chimeric.gdc_realn.bam 117070013 BAM chimeric harmonized CPTAC3 356363d8-17da-402e-8e19-6aef5da22f05 e163ed6d53863db5c037f9dbef172068 {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.RNA-Seq.genomic.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.genomic.gdc_realn.bam 8557466770 BAM genomic harmonized CPTAC3 ea8a0267-83f8-4608-b7c9-83b8d329dacd be6a6bf8eb30aae57328254805de33d3 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.RNA-Seq.genomic.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.genomic.gdc_realn.bam 9129609949 BAM genomic harmonized CPTAC3 21ae86d4-f3b8-495c-bc50-90d2139b55f7 63ace05cedaa3f2d92154703fff87cad {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.RNA-Seq.S12_L004_R1.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R1_001.fastq.gz 3923074064 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 902857fe-3aec-4efe-9d57-52a6f958c99b 757667db4f01203496edc8e40284e723 {"aliquot_tag": "ALQ_21ff925", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.RNA-Seq.S12_L004_R2.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R2_001.fastq.gz 4442548416 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 24bde46f-b757-4cf0-9304-7c67585ae3cf be0dda444f5dfed5ea7afedf17a9d822 {"aliquot_tag": "ALQ_21ff925", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.RNA-Seq.S27_L007_R1.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R1_001.fastq.gz 4043284249 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 d0cc77fb-4c6e-401a-adf0-412b06fed88a 83a3a8b06138e9e56b3540f0bb3c363a {"aliquot_tag": "ALQ_3cc38c40", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.RNA-Seq.S27_L007_R2.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R2_001.fastq.gz 4475293053 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 f8deea31-7e73-4812-908f-441f2fa0d049 fd0c146ea0f5e7c65a5ccea0be54d589 {"aliquot_tag": "ALQ_3cc38c40", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.RNA-Seq.transcriptome.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.transcriptome.gdc_realn.bam 10847400222 BAM transcriptome harmonized CPTAC3 e680ad37-4aa2-420e-8da7-3bb17e383c76 df22682357319bfe639d3a1f166ad3f6 {"aliquot_tag": "ALQ_3cc38c40", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.RNA-Seq.transcriptome.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.transcriptome.gdc_realn.bam 10324189325 BAM transcriptome harmonized CPTAC3 2c49a057-b0f8-48a2-8627-2230801f0dd4 fe716823e49d26b9bbe94b7adb2b8b75 {"aliquot_tag": "ALQ_21ff925", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.WGS.N C3N-01653 CCRCC WGS blood_normal CPT0381130002 CPT0381130002.WholeGenome.RP-2158.bam 21964602888 BAM submitted_aligned CPTAC3 fa6f7227-47fb-4021-a5b1-bd6bf0609a58 94dd47c89d58290b1993e140c3571224 {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01653.WGS.N.hg38 C3N-01653 CCRCC WGS blood_normal CPT0381130002 3c9f66ce-a052-4fa2-afd5-a06204384966_wgs_gdc_realn.bam 67562472880 BAM harmonized CPTAC3 0c10ec57-d991-487e-a8dd-e1c8e283523a 023ba1eee902c171ab6faca9e7a786bf {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01653.WGS.T C3N-01653 CCRCC WGS tumor CPT0380840009 CPT0380840009.WholeGenome.RP-2158.bam 21978851679 BAM submitted_aligned CPTAC3 b030e965-57f1-42f9-9f42-50dd021846b3 f5ee5b9a3d6017a4718a9dea9ffaf481 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.WGS.T.hg38 C3N-01653 CCRCC WGS tumor CPT0380840009 46e8bf14-7fe8-4e65-bc3b-240abc339a22_wgs_gdc_realn.bam 65044295326 BAM harmonized CPTAC3 16f44c1e-7d2c-4d61-9f54-304223b4b494 386406683a27b24fa2cdfc31386926f4 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.WXS.A C3N-01653 CCRCC WXS tissue_normal CPT0380900009 CPT0380900009.WholeExome.RP-1303.bam 28228402837 BAM submitted_aligned CPTAC3 aca49aa4-5799-43d4-a6c5-fc8699de4a44 5752c5390cd89e8a7df28dcbc549f3f5 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01653.WXS.A.hg38 C3N-01653 CCRCC WXS tissue_normal CPT0380900009 f7bbe607-d108-4d30-ab63-d9e971b8e7c4_wxs_gdc_realn.bam 38893755274 BAM harmonized CPTAC3 0f997161-0e76-46ee-b767-b945f21ad6f8 9b351437c68e0f9f53640188d12688a4 {"aliquot_tag": "ALQ_ac7c91d1", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01653.WXS.N C3N-01653 CCRCC WXS blood_normal CPT0381130002 CPT0381130002.WholeExome.RP-1303.bam 18994403553 BAM submitted_aligned CPTAC3 6be8c657-bb1d-456b-968b-99b155b16813 bfab39b65b8dc3a43a08a6b00fe482e1 {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01653.WXS.N.hg38 C3N-01653 CCRCC WXS blood_normal CPT0381130002 3c9f66ce-a052-4fa2-afd5-a06204384966_wxs_gdc_realn.bam 26129084298 BAM harmonized CPTAC3 f9b3d0da-9140-4c68-adf5-63c9a82586cb a84161571bc6ffcb33880090e611c3fa {"aliquot_tag": "ALQ_362abb50", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01653.WXS.T C3N-01653 CCRCC WXS tumor CPT0380840009 CPT0380840009.WholeExome.RP-1303.bam 23958326330 BAM submitted_aligned CPTAC3 150673fd-ceaa-47a0-8dcc-fcfa880b50d3 34349b2036ca4a545111fb3910fee967 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01653.WXS.T.hg38 C3N-01653 CCRCC WXS tumor CPT0380840009 46e8bf14-7fe8-4e65-bc3b-240abc339a22_wxs_gdc_realn.bam 33063923335 BAM harmonized CPTAC3 d12b030b-3baf-40a4-b751-f0ec2270005e f70f144ceae8b172844ed5a738b31c53 {"aliquot_tag": "ALQ_92a0e4b4", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01654.MethArray.Green.A C3N-01654 CCRCC Methylation_Array tissue_normal CPT0121510009 204373100109_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fa45de58-2d12-4fd0-8ded-342e9260a03b c2cf50353acb16311f59a1dae59525b3 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.MethArray.Green.T C3N-01654 CCRCC Methylation_Array tumor CPT0121490006 203220070082_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8e75a127-5381-4d8a-9fb5-cbac1f1f6923 d2cd5f22400befbf4d037b5c77d5a72d {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.MethArray.Red.A C3N-01654 CCRCC Methylation_Array tissue_normal CPT0121510009 204373100109_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 66ee59f9-1eb8-4dc0-8738-11bc0352fcee 6c532bd2f02f79f173759a3c570f228f {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.MethArray.Red.T C3N-01654 CCRCC Methylation_Array tumor CPT0121490006 203220070082_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 3cb9c4dc-c94c-4f9c-a163-51380315a838 37aa54e6b78f2b5da1e3fe3296d6d7d5 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.miRNA-Seq.A.hg38 C3N-01654 CCRCC miRNA-Seq tissue_normal CPT0121510006 6d15778d-6e2d-43ba-af66-338d56cbf05b_mirnaseq_gdc_realn.bam 247828017 BAM harmonized CPTAC3 3c74d31c-58c1-48fb-bf7e-c91c9f820401 8b33ca57c4b62d7c9b554d3c475ad254 {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.miRNA-Seq.S32_L005_R1.T C3N-01654 CCRCC miRNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACTCA_S32_L005_R1_001.unaln.bam 265739040 BAM S32_L005_R1 submitted_unaligned CPTAC3 17363ef4-7caa-4039-b6ee-b0294c73aec0 a3de494952feb51149d126133d47bba0 {"aliquot_tag": "ALQ_4b3df84", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.miRNA-Seq.S46_L005_R1.A C3N-01654 CCRCC miRNA-Seq tissue_normal CPT0121510006 190108_UNC31-K00269_0176_AHYGLVBBXX_TCCCGA_S46_L005_R1_001.unaln.bam 228310493 BAM S46_L005_R1 submitted_unaligned CPTAC3 80623ed9-20e1-4414-be70-3f00c6b07350 a61c89722cc9230b05a8f0f32be804d6 {"aliquot_tag": "ALQ_6f205a71", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.miRNA-Seq.T.hg38 C3N-01654 CCRCC miRNA-Seq tumor CPT0121490009 7a638cce-6efc-4173-87d3-c88b47fcec8e_mirnaseq_gdc_realn.bam 289013038 BAM harmonized CPTAC3 910d2dd9-7de3-4802-a8d8-d9ee1da5517c 7b3c0138d11757c4e4994c76f8c183d2 {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.RNA-Seq.chimeric.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.chimeric.gdc_realn.bam 35166213 BAM chimeric harmonized CPTAC3 c9d00bc8-124b-41c3-b8c5-b4eccab16e96 574c9c855e425cf2fd17729331800671 {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.RNA-Seq.chimeric.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.chimeric.gdc_realn.bam 41991305 BAM chimeric harmonized CPTAC3 e0b4b5e0-73ea-4cef-945a-850646b52829 a89bc7b6b721c1379dbb5bd5db515d4b {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.RNA-Seq.genomic.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.genomic.gdc_realn.bam 8356002308 BAM genomic harmonized CPTAC3 0bea9a8a-763e-497d-b2c2-9ddcf337aecf 6cdbd17d2c566e25dd2088404ddc9f04 {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.RNA-Seq.genomic.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.genomic.gdc_realn.bam 8963716038 BAM genomic harmonized CPTAC3 c3028a2f-914c-4ec4-8d2c-d121d50529d6 281e13aba7a3a7357295d4b31c5d9674 {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.RNA-Seq.S12_L003_R1.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4175032929 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 127b6bff-8a3f-4776-b233-3b679dffa7b5 fbcf9bcada5c35df67ac4b9644461cf1 {"aliquot_tag": "ALQ_4b3df84", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.RNA-Seq.S12_L003_R2.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4387876435 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 7fe4eb04-1599-4151-a606-a2556673c539 8818436f40a07ed74f979f7336b2ac5e {"aliquot_tag": "ALQ_4b3df84", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.RNA-Seq.S77_L008_R1.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R1_001.fastq.gz 3866145561 FASTQ S77_L008_R1 submitted_unaligned CPTAC3 cd9b7976-9552-4d56-8eec-e2aef0bd44d1 d620f6e47d1af59238c587b08be8a4eb {"aliquot_tag": "ALQ_6f205a71", "sample": "S77", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.RNA-Seq.S77_L008_R2.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R2_001.fastq.gz 4020226117 FASTQ S77_L008_R2 submitted_unaligned CPTAC3 cddf7d17-0b60-4be0-86db-425a55eb4d70 8ef9f454c8cbb58c6dc50b73fbe439a6 {"aliquot_tag": "ALQ_6f205a71", "sample": "S77", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.RNA-Seq.transcriptome.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.transcriptome.gdc_realn.bam 10221761434 BAM transcriptome harmonized CPTAC3 47c86777-e3cd-4db7-8658-65a68c0ed94e 400ba5cdafb33608c7775663dcd2003c {"aliquot_tag": "ALQ_6f205a71", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.RNA-Seq.transcriptome.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.transcriptome.gdc_realn.bam 11628001101 BAM transcriptome harmonized CPTAC3 ebf0bb1f-5901-4a44-8ce5-0e3e11fda191 db568a0f54a03ac0e7ac8f64c45eb329 {"aliquot_tag": "ALQ_4b3df84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.WGS.A C3N-01654 CCRCC WGS tissue_normal CPT0121510009 CPT0121510009.WholeGenome.RP-1303.bam 58378410551 BAM submitted_aligned CPTAC3 e09c3be4-a67a-483c-9fd9-a4daa8d3f18b da524fc45cecd4ce43cd71feebef3128 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.WGS.A.hg38 C3N-01654 CCRCC WGS tissue_normal CPT0121510009 b9bee8a6-a804-481e-9e55-f44cad81601e_wgs_gdc_realn.bam 85984140358 BAM harmonized CPTAC3 041bd79f-5db7-42d9-8faa-2d9658fdb4f2 bd377560a9d358eb7c9df510cd6c5380 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.WGS.N C3N-01654 CCRCC WGS blood_normal CPT0121550002 CPT0121550002.WholeGenome.RP-1303.bam 59611997994 BAM submitted_aligned CPTAC3 da4aa637-b9e6-4b78-8902-88d7a11826ca ef43de127229b44e1a46e9a1b26e05bc {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01654.WGS.N.hg38 C3N-01654 CCRCC WGS blood_normal CPT0121550002 50f7480c-a254-49ac-9246-58a0b881d7b4_wgs_gdc_realn.bam 85937662656 BAM harmonized CPTAC3 82fed84d-c4ed-44d1-99e6-a4780ac88e41 71082ae979f3a99d6e6632962e42b7e3 {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01654.WGS.T C3N-01654 CCRCC WGS tumor CPT0121490006 CPT0121490006.WholeGenome.RP-1303.bam 61962624747 BAM submitted_aligned CPTAC3 9c7b427b-705e-407c-b87f-ec0fd6f825a7 16721e9cfb121bfbbfbe42d3d3dc9993 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.WGS.T.hg38 C3N-01654 CCRCC WGS tumor CPT0121490006 37913f62-c370-4908-b43a-9d89e283e6f0_wgs_gdc_realn.bam 91881204333 BAM harmonized CPTAC3 58f447e1-210a-4854-a1ed-c325bb378fcf d9903ca035c75600375781e2e829fa65 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.WXS.A C3N-01654 CCRCC WXS tissue_normal CPT0121510009 CPT0121510009.WholeExome.RP-1303.bam 23701925047 BAM submitted_aligned CPTAC3 28faeec1-4274-4708-a8c1-9595d13a8160 3eca2c8d1c370d74e320092a036f965a {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.WXS.A.hg38 C3N-01654 CCRCC WXS tissue_normal CPT0121510009 b9bee8a6-a804-481e-9e55-f44cad81601e_wxs_gdc_realn.bam 33837292716 BAM harmonized CPTAC3 1928bb95-eddb-4a08-ae35-0f6f1ba73a6d 907820f63455cbab90a7cd38800295b7 {"aliquot_tag": "ALQ_ff9f47e0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01654.WXS.N C3N-01654 CCRCC WXS blood_normal CPT0121550002 CPT0121550002.WholeExome.RP-1303.bam 22358172643 BAM submitted_aligned CPTAC3 17bdd89d-cac7-4dec-b5e0-816ef5fb93c3 8a6c1a07ec7884648df6a85238096eba {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01654.WXS.N.hg38 C3N-01654 CCRCC WXS blood_normal CPT0121550002 50f7480c-a254-49ac-9246-58a0b881d7b4_wxs_gdc_realn.bam 30517791344 BAM harmonized CPTAC3 23a9749c-186b-4f2c-a80b-2b1a4cdd65b4 0eab100393ba2ca7cc42ded1c8d66dc5 {"aliquot_tag": "ALQ_9dcd38a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01654.WXS.T C3N-01654 CCRCC WXS tumor CPT0121490006 CPT0121490006.WholeExome.RP-1303.bam 26789780870 BAM submitted_aligned CPTAC3 a804084b-706d-4d0e-b1fa-6b1a74891d54 90fc498db0236621195ac77770d0c42f {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01654.WXS.T.hg38 C3N-01654 CCRCC WXS tumor CPT0121490006 37913f62-c370-4908-b43a-9d89e283e6f0_wxs_gdc_realn.bam 37669617359 BAM harmonized CPTAC3 28fb97e2-a3d0-4925-af96-5ddc29d8e1b8 c1318fce0d3806a1567765922d8ee941 {"aliquot_tag": "ALQ_940cc215", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.MethArray.Green.T C3N-01655 CCRCC Methylation_Array tumor CPT0121560005 203219650098_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 fb70e47d-5d2f-4821-aac5-89dcd54c45dd 092093824c48de4e9d7f7d8abe619558 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.MethArray.Red.T C3N-01655 CCRCC Methylation_Array tumor CPT0121560005 203219650098_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 0dc790f6-e10a-461a-a292-9ad54444cac2 7dd55c9b562ed789a64de7cc604403b0 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.miRNA-Seq.S33_L005_R1.T C3N-01655 CCRCC miRNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGGCG_S33_L005_R1_001.unaln.bam 147781433 BAM S33_L005_R1 submitted_unaligned CPTAC3 3504a4f8-2c02-472e-ad37-2f6f5e1fed7b a3f6494f9811eaf27f999f8c78d8f408 {"aliquot_tag": "ALQ_3ab8ab66", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.miRNA-Seq.T.hg38 C3N-01655 CCRCC miRNA-Seq tumor CPT0121560008 f7483494-fd71-42e0-b6aa-613ab9378359_mirnaseq_gdc_realn.bam 162648820 BAM harmonized CPTAC3 9cb2f7a8-cdec-4093-824d-b5d204c33a99 14eb822acac5883d5f2e589c760101fc {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.RNA-Seq.chimeric.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.chimeric.gdc_realn.bam 129842119 BAM chimeric harmonized CPTAC3 8d2520d9-6ba5-4692-b3a6-796d31fff1eb 6a6e9bfe400be2ef5d7573085e2becda {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.RNA-Seq.genomic.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.genomic.gdc_realn.bam 7346214897 BAM genomic harmonized CPTAC3 e993201c-7faf-4684-a0a3-c5448cc8266d c7508203259e2d249aecc7c6f5b20adb {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.RNA-Seq.S15_L004_R1.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R1_001.fastq.gz 3547815785 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 5369b163-1443-4083-ac1e-600c06674076 8c5bcb3e019620a1c0c2a03576f2c231 {"aliquot_tag": "ALQ_3ab8ab66", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.RNA-Seq.S15_L004_R2.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R2_001.fastq.gz 3671645291 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 0fb8225d-2d8b-418b-a40b-4a5179eb7772 92d70969a0f8686f890c98d9b37321bd {"aliquot_tag": "ALQ_3ab8ab66", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.RNA-Seq.transcriptome.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.transcriptome.gdc_realn.bam 9698285160 BAM transcriptome harmonized CPTAC3 751858da-5ae8-40d3-93dd-edc66204eaf1 b5f091709e9a26ad6fa0949b4e887ba3 {"aliquot_tag": "ALQ_3ab8ab66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.WGS.N C3N-01655 CCRCC WGS blood_normal CPT0121600002 CPT0121600002.WholeGenome.RP-1303.bam 56046371997 BAM submitted_aligned CPTAC3 58f983f0-b884-43f7-a404-d5e62e0dd644 95b13edcb1d1b916e37c5f8fe1e0c57d {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01655.WGS.N.hg38 C3N-01655 CCRCC WGS blood_normal CPT0121600002 3c68b082-e933-4f28-a836-5067d8fa29a5_wgs_gdc_realn.bam 82157923684 BAM harmonized CPTAC3 601084fe-10cb-4d69-a2fd-3aa4e4205d20 8f3997f7d9718b2ce8a44c5c1d853132 {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01655.WGS.T C3N-01655 CCRCC WGS tumor CPT0121560005 CPT0121560005.WholeGenome.RP-1303.bam 65582085835 BAM submitted_aligned CPTAC3 e3e4a29c-9721-4cd6-a84a-c6e0e76c445b 78dd6ac2c1456722fd49c5a5f06659bc {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.WGS.T.hg38 C3N-01655 CCRCC WGS tumor CPT0121560005 67021831-e13b-4ad2-b188-61ba9abdca45_wgs_gdc_realn.bam 96725368747 BAM harmonized CPTAC3 065ca41d-1262-4938-88ec-96379530619e c93c56341f54efecf2abf63a0977db03 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.WXS.N C3N-01655 CCRCC WXS blood_normal CPT0121600002 CPT0121600002.WholeExome.RP-1303.bam 26589117568 BAM submitted_aligned CPTAC3 b2938685-3fae-4bbd-95b6-03aa72c61f09 8109d3b94fe3c36e67675ccf27c11f98 {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01655.WXS.N.hg38 C3N-01655 CCRCC WXS blood_normal CPT0121600002 3c68b082-e933-4f28-a836-5067d8fa29a5_wxs_gdc_realn.bam 36672405223 BAM harmonized CPTAC3 ed463fd3-6f99-468f-a772-a6550026ec82 411f508e0fa6675b1507d92c80ff19c2 {"aliquot_tag": "ALQ_d3b9c576", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01655.WXS.T C3N-01655 CCRCC WXS tumor CPT0121560005 CPT0121560005.WholeExome.RP-1303.bam 17889161967 BAM submitted_aligned CPTAC3 381f99fc-e37e-46d7-82e6-febb0c0e79cd 71384b89ac9a1423285ef5916fcb0160 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01655.WXS.T.hg38 C3N-01655 CCRCC WXS tumor CPT0121560005 67021831-e13b-4ad2-b188-61ba9abdca45_wxs_gdc_realn.bam 24941228402 BAM harmonized CPTAC3 3347a14d-e1ed-4fcf-b4bd-5d31246a412a 643266524b7bc660f5410d724b83f881 {"aliquot_tag": "ALQ_4409d7db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.MethArray.Green.A C3N-01656 CCRCC Methylation_Array tissue_normal CPT0161930006 204373100047_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 18d0a3f5-b36c-47a9-906f-3adf5e062809 b935acb5edcd5a243ee0c18efd447d33 {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.MethArray.Green.T C3N-01656 CCRCC Methylation_Array tumor CPT0121610006 203219650177_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 202145b9-8a90-413c-9c83-4381aa283d14 4073969957f2bf1d88a4454f2593740c {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.MethArray.Red.A C3N-01656 CCRCC Methylation_Array tissue_normal CPT0161930006 204373100047_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 6c02452d-fbde-407c-ac51-9d65bb055ada 54456d61c79ea7491b4aa154cdba5c90 {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.MethArray.Red.T C3N-01656 CCRCC Methylation_Array tumor CPT0121610006 203219650177_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 e3545f0a-d6c9-48e5-afe9-1f39b9ec35c9 4e3ce4e5e487f1f4561c0aaf66befeaa {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.miRNA-Seq.A.hg38 C3N-01656 CCRCC miRNA-Seq tissue_normal CPT0161930009 bf9a2e7f-1bf4-4c24-8da8-a1b6229cfd23_mirnaseq_gdc_realn.bam 259395079 BAM harmonized CPTAC3 46fac139-192a-4c36-8b7e-0481ac8cfa18 33c0020ebd8422330b7bffa566e6f577 {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.miRNA-Seq.S14_L002_R1.A C3N-01656 CCRCC miRNA-Seq tissue_normal CPT0161930009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L002_R1_001.unaln.bam 237311959 BAM S14_L002_R1 submitted_unaligned CPTAC3 58af27a7-a53f-404a-aae1-b10398e4bdef 515a7185d03c614352255a05593a5adc {"aliquot_tag": "ALQ_76d7da01", "sample": "S14", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.miRNA-Seq.S34_L005_R1.T C3N-01656 CCRCC miRNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0176_AHYGLVBBXX_CATGGC_S34_L005_R1_001.unaln.bam 155301568 BAM S34_L005_R1 submitted_unaligned CPTAC3 17de96f8-2b23-4111-a940-cc26b988d46a 2e316890cf46456bfe614e597ed9381d {"aliquot_tag": "ALQ_790b354e", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.miRNA-Seq.T.hg38 C3N-01656 CCRCC miRNA-Seq tumor CPT0121610009 e4966596-12c3-48b5-8a4b-ba4f9b7e496d_mirnaseq_gdc_realn.bam 165870294 BAM harmonized CPTAC3 fc77c762-b62e-4a82-9fdc-9290398cb5b0 1c01db0de5a60dc6c4a2940d5c51c780 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.RNA-Seq.chimeric.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.chimeric.gdc_realn.bam 141638868 BAM chimeric harmonized CPTAC3 09b8743c-e7bb-4c57-ade1-b5902bb37f17 d47ab57974b55ce43022d45d4093d3f6 {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.RNA-Seq.chimeric.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.chimeric.gdc_realn.bam 91262345 BAM chimeric harmonized CPTAC3 c1786d8a-4694-4e4d-bbcf-b48a21ffdc01 087b3919b582d07fbc6e7cd8afd9d316 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.RNA-Seq.genomic.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.genomic.gdc_realn.bam 9013811457 BAM genomic harmonized CPTAC3 743ce654-4039-4c34-845b-3237fda9050d 217297e5c4567bed87453deaa9fc1c9a {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.RNA-Seq.genomic.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.genomic.gdc_realn.bam 8628096850 BAM genomic harmonized CPTAC3 ce8cd2a1-efcc-43d2-a93c-3cbce8d48fb7 49cb4f1a9f8f76e4ca09550ed29c5de3 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.RNA-Seq.S14_L004_R1.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R1_001.fastq.gz 4270137681 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 510055c3-452b-4d66-9a51-9646fbd34c84 dffc36029ea341219b16990c50d9f45a {"aliquot_tag": "ALQ_790b354e", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.RNA-Seq.S14_L004_R2.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R2_001.fastq.gz 4421707761 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 f49067a5-015e-468d-b0e3-85f583ce5309 bd9a783bd5c00a77268eadd97cbb7dfb {"aliquot_tag": "ALQ_790b354e", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.RNA-Seq.S15_L006_R1.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R1_001.fastq.gz 4025035984 FASTQ S15_L006_R1 submitted_unaligned CPTAC3 822128c8-b3a2-49dc-9fc8-a002956989b8 fad53830184b67c247d5e4f8b3cbb561 {"aliquot_tag": "ALQ_76d7da01", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.RNA-Seq.S15_L006_R2.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R2_001.fastq.gz 4301438538 FASTQ S15_L006_R2 submitted_unaligned CPTAC3 ffe292ba-1d26-4525-825b-44fae0804a9d 61dbaa47f2909c43e574bb3141b5efb0 {"aliquot_tag": "ALQ_76d7da01", "sample": "S15", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.RNA-Seq.transcriptome.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.transcriptome.gdc_realn.bam 10168996375 BAM transcriptome harmonized CPTAC3 c3a4d7c8-4af9-4afa-8024-ce2f31d807d8 385ec7b8bb1e9ab44dcd276ea949249f {"aliquot_tag": "ALQ_76d7da01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.RNA-Seq.transcriptome.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.transcriptome.gdc_realn.bam 12014368594 BAM transcriptome harmonized CPTAC3 dbd2f577-527b-4968-9279-350d4276addb e529975b2b074130d09f74424f9000a6 {"aliquot_tag": "ALQ_790b354e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.WGS.A C3N-01656 CCRCC WGS tissue_normal CPT0161930006 CPT0161930006.WholeGenome.RP-1303.bam 56061298391 BAM submitted_aligned CPTAC3 4dbc1898-85bc-489c-bc0d-0958c651852c f4602651b973eba45be93b180b1162fd {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.WGS.A.hg38 C3N-01656 CCRCC WGS tissue_normal CPT0161930006 055e61ad-20be-4560-97a9-3dc6a412afb9_wgs_gdc_realn.bam 83044201613 BAM harmonized CPTAC3 fd5daeca-04bc-45ea-9af6-8760d5166de0 89e8dc8cc334fe2ae474940155f473cd {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.WGS.N C3N-01656 CCRCC WGS blood_normal CPT0121650002 CPT0121650002.WholeGenome.RP-1303.bam 61230992030 BAM submitted_aligned CPTAC3 832f9d37-3696-4018-8864-f9fe2237203a 7fa64acc5a088ae9933d28956d7d8ef1 {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01656.WGS.N.hg38 C3N-01656 CCRCC WGS blood_normal CPT0121650002 01c956b1-a093-441f-8a89-0bd98eca36d3_wgs_gdc_realn.bam 90571276632 BAM harmonized CPTAC3 3660c9fc-05a8-472d-89b0-d8a4fd9222ee 9bb1e5b6475b3ddf8b73f26675ad677d {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01656.WGS.T C3N-01656 CCRCC WGS tumor CPT0121610006 CPT0121610006.WholeGenome.RP-1303.bam 61531586295 BAM submitted_aligned CPTAC3 e7302081-8c76-4f51-96de-6733a4d25ab4 32fbf852a203c134b372e9c4152be480 {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.WGS.T.hg38 C3N-01656 CCRCC WGS tumor CPT0121610006 e8c9f364-ac02-47cf-a61a-5063fd26e241_wgs_gdc_realn.bam 90616133822 BAM harmonized CPTAC3 896a8da6-d0f0-43a5-b86e-fbfa46fb7f16 ff8d1c12369872eb527d9404e8d0135f {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.WXS.A C3N-01656 CCRCC WXS tissue_normal CPT0161930006 CPT0161930006.WholeExome.RP-1303.bam 20255377961 BAM submitted_aligned CPTAC3 78563955-4997-4639-ae87-b13d67e26d48 4a52c75a0a46824aa0d9bc9d44cf8a57 {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.WXS.A.hg38 C3N-01656 CCRCC WXS tissue_normal CPT0161930006 055e61ad-20be-4560-97a9-3dc6a412afb9_wxs_gdc_realn.bam 27927037427 BAM harmonized CPTAC3 16122671-bd82-474c-b9b0-1c35fd194614 773f04da8dcbca282a644f30d1a29e3f {"aliquot_tag": "ALQ_e668c790", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01656.WXS.N C3N-01656 CCRCC WXS blood_normal CPT0121650002 CPT0121650002.WholeExome.RP-1303.bam 23313511034 BAM submitted_aligned CPTAC3 772ed6c0-947c-4897-bd1e-dfb43dc6816d 31fef537bb41403be6f770e7dae013ea {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01656.WXS.N.hg38 C3N-01656 CCRCC WXS blood_normal CPT0121650002 01c956b1-a093-441f-8a89-0bd98eca36d3_wxs_gdc_realn.bam 32354978339 BAM harmonized CPTAC3 cfe204d1-64d6-4ff0-96e7-0c020f71aac6 6a37ca29ceb270abb8d73b61b08a6531 {"aliquot_tag": "ALQ_1b594a06", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01656.WXS.T C3N-01656 CCRCC WXS tumor CPT0121610006 CPT0121610006.WholeExome.RP-1303.bam 18454125401 BAM submitted_aligned CPTAC3 74aedb25-bedb-4285-b523-7adb18183dbb 40b9ead33edae3d4347695ebf0ddf5ab {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01656.WXS.T.hg38 C3N-01656 CCRCC WXS tumor CPT0121610006 e8c9f364-ac02-47cf-a61a-5063fd26e241_wxs_gdc_realn.bam 25835245272 BAM harmonized CPTAC3 7938e798-830b-4277-8c26-335a5c746a47 40685a3e9708aac259d08c084243b213 {"aliquot_tag": "ALQ_e9b428df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.MethArray.Green.T C3N-01657 CCRCC Methylation_Array tumor CPT0124170005 203219640172_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 05e3b13f-1c64-4b8b-8d93-b51ce418828a 326fffa9f23ca21d32a15b244e185e5a {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.MethArray.Red.T C3N-01657 CCRCC Methylation_Array tumor CPT0124170005 203219640172_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 961904da-7190-4ba3-9f97-8e3473d86661 21ee7d0dcd2477174c1300897c1c05d0 {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.miRNA-Seq.S35_L005_R1.T C3N-01657 CCRCC miRNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0176_AHYGLVBBXX_CATTTT_S35_L005_R1_001.unaln.bam 353015860 BAM S35_L005_R1 submitted_unaligned CPTAC3 010d7043-dbf5-4fa7-bf31-02fcded420ab 71ae2dade581d033a6dfc0015ee67ac5 {"aliquot_tag": "ALQ_ce71ef67", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.miRNA-Seq.T.hg38 C3N-01657 CCRCC miRNA-Seq tumor CPT0124170008 4d03b1b8-92f4-4765-98b2-5ac2dc205258_mirnaseq_gdc_realn.bam 379654123 BAM harmonized CPTAC3 472b3d68-7266-4efd-80ad-12e914bb790b 25a84bf786a07bbbf7282c21400f5dd0 {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.RNA-Seq.chimeric.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.chimeric.gdc_realn.bam 131827574 BAM chimeric harmonized CPTAC3 73c4e717-755f-44b9-b90d-c8210ef6f027 a5a595aa77a25b4eca4ad40e80315bb2 {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.RNA-Seq.genomic.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.genomic.gdc_realn.bam 8618047377 BAM genomic harmonized CPTAC3 5917d135-7f79-4c70-b30f-f19d34f3b15c 996673abbb34e35f17d47220161b0ace {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.RNA-Seq.S13_L004_R1.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R1_001.fastq.gz 4119197432 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 155a088c-a883-4f0f-abe6-4101f436d139 8fd99c69917794c02ed8f27527795be7 {"aliquot_tag": "ALQ_ce71ef67", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.RNA-Seq.S13_L004_R2.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R2_001.fastq.gz 4565044949 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 924ba030-96b3-4a62-83e8-08586cfc53b9 ab80411de6035cffc3e6cad96cbefd88 {"aliquot_tag": "ALQ_ce71ef67", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.RNA-Seq.transcriptome.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.transcriptome.gdc_realn.bam 10428001597 BAM transcriptome harmonized CPTAC3 fef5eba1-b009-4e3a-8211-e347cbfd5d2a 6c500431a9b7d493d7ca1e9abdb222b2 {"aliquot_tag": "ALQ_ce71ef67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.WGS.N C3N-01657 CCRCC WGS blood_normal CPT0124200002 CPT0124200002.WholeGenome.RP-1303.bam 65915128205 BAM submitted_aligned CPTAC3 c4713a54-7351-41be-b5c7-8ab4362c3c06 19049b15a4d790ddf1c70fa58cb83a20 {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01657.WGS.N.hg38 C3N-01657 CCRCC WGS blood_normal CPT0124200002 39cebede-dac2-4854-94b8-0bc773153eb7_wgs_gdc_realn.bam 95665413430 BAM harmonized CPTAC3 c8846750-3b04-40b7-9a56-3fd485a1abba a0645065c4c35aa75835333ae9871eeb {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01657.WGS.T C3N-01657 CCRCC WGS tumor CPT0124170005 CPT0124170005.WholeGenome.RP-1303.bam 58993865903 BAM submitted_aligned CPTAC3 f9894393-fcb1-4c85-8f5a-b45c33ee3927 48e4ab38cc938c5f4f9d2f63a21444a5 {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.WGS.T.hg38 C3N-01657 CCRCC WGS tumor CPT0124170005 f3a8375d-97e8-4217-ba2b-135a8614a951_wgs_gdc_realn.bam 84874531423 BAM harmonized CPTAC3 b9e96c17-520f-40bc-b5e7-b8a8c785db30 c7c300ff34785173903018e0aae7087e {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.WXS.N C3N-01657 CCRCC WXS blood_normal CPT0124200002 CPT0124200002.WholeExome.RP-1303.bam 33304531895 BAM submitted_aligned CPTAC3 b82eda49-8a00-42d0-b182-4e4904d838bd 735ba2946be72c713081ed8d6ee0cbb9 {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01657.WXS.N.hg38 C3N-01657 CCRCC WXS blood_normal CPT0124200002 39cebede-dac2-4854-94b8-0bc773153eb7_wxs_gdc_realn.bam 45573401775 BAM harmonized CPTAC3 d3b31624-471a-4bf6-979c-16d3649401e0 74ffff5f4c23aa53a195a395a8aca84d {"aliquot_tag": "ALQ_1a10a8c7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01657.WXS.T C3N-01657 CCRCC WXS tumor CPT0124170005 CPT0124170005.WholeExome.RP-1303.bam 16713325599 BAM submitted_aligned CPTAC3 70299922-a0c6-4031-b3d2-1f6c44c307b4 ba50d6d510ce661de7f0f86dd6896911 {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01657.WXS.T.hg38 C3N-01657 CCRCC WXS tumor CPT0124170005 f3a8375d-97e8-4217-ba2b-135a8614a951_wxs_gdc_realn.bam 23343802153 BAM harmonized CPTAC3 0f53a373-3411-4268-9d03-94efcdba5cf4 4d81b4d5d1c40a0cf540af8308e6c42b {"aliquot_tag": "ALQ_b0c093da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.MethArray.Green.T C3N-01714 PDA Methylation_Array tumor CPT0124360006 203219650156_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 17fdf823-6c1b-4416-8070-0260e3594be0 7106c7cb59194261cd85885357f9cb2e {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.MethArray.Red.T C3N-01714 PDA Methylation_Array tumor CPT0124360006 203219650156_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 1357534c-3fa4-4e84-96aa-de99f5471291 dfe3357ff2f819c13cd2a4352fc68c2f {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.miRNA-Seq.S46_L002_R1.T C3N-01714 PDA miRNA-Seq tumor CPT0124360009 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L002_R1_001.unaln.bam 257655218 BAM S46_L002_R1 submitted_unaligned CPTAC3 e4084f86-ad01-4c93-a3e4-7a8def3e3d51 6939f4d58b1d688ff07bf30aa9c450bf {"aliquot_tag": "ALQ_c9de574a", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.miRNA-Seq.T.hg38 C3N-01714 PDA miRNA-Seq tumor CPT0124360009 03220016-40c4-432e-a999-361c4298ca4d_mirnaseq_gdc_realn.bam 280941647 BAM harmonized CPTAC3 9fb548d8-1c71-412a-a3ec-6f107c666938 491e3d183fe79abdaaa50fbbb46b0bd5 {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.RNA-Seq.chimeric.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.chimeric.gdc_realn.bam 129855423 BAM chimeric harmonized CPTAC3 da605fb2-3801-4bcd-bda2-e528e28b64d8 dfa6139b8b888cc6b9442db41c9216f6 {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.RNA-Seq.genomic.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.genomic.gdc_realn.bam 11221803663 BAM genomic harmonized CPTAC3 cad81e4d-05f9-4708-948a-367f9cbaf75c c60ccd35cbbd684fa710342dd9d2c76a {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.RNA-Seq.S63_L008_R1.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R1_001.fastq.gz 5018991485 FASTQ S63_L008_R1 submitted_unaligned CPTAC3 7c110bdf-1f85-4055-8c8f-256e4524c878 686db6904ab9333d71fe1c68c4efe5d6 {"aliquot_tag": "ALQ_c9de574a", "sample": "S63", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.RNA-Seq.S63_L008_R2.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R2_001.fastq.gz 5400252665 FASTQ S63_L008_R2 submitted_unaligned CPTAC3 286e158d-1caf-43b2-86db-c11e373246b3 07bfd2a493115692152af1ca45e65b1c {"aliquot_tag": "ALQ_c9de574a", "sample": "S63", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.RNA-Seq.transcriptome.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.transcriptome.gdc_realn.bam 15695238774 BAM transcriptome harmonized CPTAC3 ec89184a-b5c0-4527-b253-f30b62b17096 0fea3aed5883f6bb286bff97032385e4 {"aliquot_tag": "ALQ_c9de574a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WGS.N C3N-01714 PDA WGS blood_normal CPT0124390002 CPT0124390002.WholeGenome.RP-1303.bam 66812788025 BAM submitted_aligned CPTAC3 b8e48856-8a5e-4e83-a026-3932d3e88c9a 1dd8289d89719cebd5c21919fe412093 {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01714.WGS.N.hg38 C3N-01714 PDA WGS blood_normal CPT0124390002 68aee3d6-a976-4077-b5ca-d52924379119_wgs_gdc_realn.bam 97534057770 BAM harmonized CPTAC3 69a0da73-34e1-4644-8221-bc350f908dc2 3f8f89c68edf7386eec07083b3120f04 {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01714.WGS.T C3N-01714 PDA WGS tumor CPT0124360006_1 CPT0124360006_1.WholeGenome.RP-1303.bam 138780263727 BAM submitted_aligned CPTAC3 b91065ad-4d38-461d-9b90-ddc3b440e7e3 87102876a8704168fa66fa0c911292e6 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WGS.T C3N-01714 PDA WGS tumor CPT0124360006 CPT0124360006.WholeGenome.RP-1303.bam 76985796900 BAM submitted_aligned CPTAC3 e0f33ec2-4115-4898-8fc0-5702f3c26c0b 6f5c2c8c0ba80d5d60f6738c1193f220 {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WGS.T.hg38 C3N-01714 PDA WGS tumor CPT0124360006_1 7620b7d8-e9d8-4d01-ae48-ef05eab8aff5_wgs_gdc_realn.bam 204149552535 BAM harmonized CPTAC3 560a127a-04ae-4719-aa8c-99aeec07a7c8 7b92be8b74b3d1244814fb104187ca86 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WGS.T.hg38 C3N-01714 PDA WGS tumor CPT0124360006 9a42f513-8016-4919-b2f9-5417ad2a5b8c_wgs_gdc_realn.bam 113583188925 BAM harmonized CPTAC3 64e569b9-1d34-4e8a-8d5f-19c77432790c 08f239c3d2d7153ac374e107d31ee98b {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WXS.N C3N-01714 PDA WXS blood_normal CPT0124390002 CPT0124390002.WholeExome.RP-1303.bam 29717940712 BAM submitted_aligned CPTAC3 6bdf59c9-22ae-4228-a1e2-cc92e38f78d7 f33599448bb1705ae6d7cb1fccf783d4 {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01714.WXS.N.hg38 C3N-01714 PDA WXS blood_normal CPT0124390002 68aee3d6-a976-4077-b5ca-d52924379119_wxs_gdc_realn.bam 39981555125 BAM harmonized CPTAC3 3224c0ca-ea97-4b6f-b4b8-1c951bce59a6 cd754d011a61e2dc4bd145e2ba6e8e3f {"aliquot_tag": "ALQ_dc5c1913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01714.WXS.T C3N-01714 PDA WXS tumor CPT0124360006_1 CPT0124360006_1.WholeExome.RP-1303.bam 50860141725 BAM submitted_aligned CPTAC3 54ee81c2-0e65-4930-8dd8-e301bcc21760 aef1150aee59b249a7cc5cad8b938528 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WXS.T C3N-01714 PDA WXS tumor CPT0124360006 CPT0124360006.WholeExome.RP-1303.bam 27522041242 BAM submitted_aligned CPTAC3 cd43f8b0-8d70-47d4-8747-a0c26bdfc512 ccfd6e0f59c4d4c3856ff157cfbfce26 {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WXS.T.hg38 C3N-01714 PDA WXS tumor CPT0124360006_1 7620b7d8-e9d8-4d01-ae48-ef05eab8aff5_wxs_gdc_realn.bam 69934471279 BAM harmonized CPTAC3 f76db08d-45f7-478b-92c5-96823fef6a91 9ce02e15a09d92e9a75c4fb482b86c88 {"aliquot_tag": "ALQ_d9e1be65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01714.WXS.T.hg38 C3N-01714 PDA WXS tumor CPT0124360006 9a42f513-8016-4919-b2f9-5417ad2a5b8c_wxs_gdc_realn.bam 37357905007 BAM harmonized CPTAC3 4d0ddf01-ae9b-47f8-9e1f-8a78a6ee122f f11a47f7a5a1eba281e657d26135f37d {"aliquot_tag": "ALQ_59614adb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.MethArray.Green.T C3N-01715 PDA Methylation_Array tumor CPT0125090006 203219650100_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4d716f9c-b3df-4ae8-9d08-31060303122a 48e38f180b610b55c9bd141364ffd83e {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.MethArray.Red.T C3N-01715 PDA Methylation_Array tumor CPT0125090006 203219650100_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 cccc0454-b44b-48a8-a43a-37356f67c1a0 22743eb721f94314b3c8767eb1912e3f {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.miRNA-Seq.S41_L002_R1.T C3N-01715 PDA miRNA-Seq tumor CPT0125090009 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 220094750 BAM S41_L002_R1 submitted_unaligned CPTAC3 176f46d5-c7eb-4a42-8b3f-d85bccff90db aaaeb269e9e140860cc49c403b2b843b {"aliquot_tag": "ALQ_6b6db981", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.miRNA-Seq.T.hg38 C3N-01715 PDA miRNA-Seq tumor CPT0125090009 fc387d39-f4ce-44f9-a0ac-47007a2395a9_mirnaseq_gdc_realn.bam 240775400 BAM harmonized CPTAC3 3ea775c3-4d42-4f46-b295-e226831fd770 da97eea45f17314004b78cf372806755 {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.RNA-Seq.chimeric.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.chimeric.gdc_realn.bam 118198236 BAM chimeric harmonized CPTAC3 0348f441-3a0d-46a6-8609-a2f813934ae9 09e79a87234a0e1c5472c86b026a5545 {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.RNA-Seq.genomic.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.genomic.gdc_realn.bam 9336964005 BAM genomic harmonized CPTAC3 6c247f11-5438-425b-9fc0-704b04a4641a b3b60dcf8a501024f6b0a4e7ade94822 {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.RNA-Seq.S4_L001_R1.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R1_001.fastq.gz 4296880977 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 50bd8485-e402-4938-b53a-f194d3276492 e9911795a01fa322568b231a39ce96da {"aliquot_tag": "ALQ_6b6db981", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.RNA-Seq.S4_L001_R2.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R2_001.fastq.gz 4687243407 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 2c7fbfea-a3f3-41a4-b5c4-5ec562ee4597 d186ad70faf9d15eb3e888456c9d23a4 {"aliquot_tag": "ALQ_6b6db981", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.RNA-Seq.transcriptome.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.transcriptome.gdc_realn.bam 12743167312 BAM transcriptome harmonized CPTAC3 d0ef368c-8c84-4f14-8070-2b4cdbfa31c8 45e86cb416dc997fb23675678654570a {"aliquot_tag": "ALQ_6b6db981", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WGS.N C3N-01715 PDA WGS blood_normal CPT0125120002 CPT0125120002.WholeGenome.RP-1303.bam 65615184278 BAM submitted_aligned CPTAC3 3593027c-2d58-4038-bf3e-9a0fbf882c39 ee11e8ae24efe4929c2e58914c9b5809 {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01715.WGS.N.hg38 C3N-01715 PDA WGS blood_normal CPT0125120002 c59da17d-bed1-4cd9-a587-b069bb2fbd98_wgs_gdc_realn.bam 96955853870 BAM harmonized CPTAC3 ec5efeaa-2203-404e-a995-282e36b57ab8 3bca75ef726e1b353b86d72d964bee1a {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01715.WGS.T C3N-01715 PDA WGS tumor CPT0125090006_1 CPT0125090006_1.WholeGenome.RP-1303.bam 147355279968 BAM submitted_aligned CPTAC3 8ab346c7-88a6-4c78-aef2-1ad495a2cf73 48290b83fda5da2f7ec3cf671b81795c {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WGS.T C3N-01715 PDA WGS tumor CPT0125090006 CPT0125090006.WholeGenome.RP-1303.bam 59896773435 BAM submitted_aligned CPTAC3 4e75e379-ad63-42e3-9275-e9a87dd33fd0 3814bf867bc88387e0a8fa31043bbfd8 {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WGS.T.hg38 C3N-01715 PDA WGS tumor CPT0125090006_1 46f2d2eb-9dbe-4633-ae7c-f42ff9c953ac_wgs_gdc_realn.bam 216672865152 BAM harmonized CPTAC3 c7606b0b-44aa-487b-978e-104e7459a7fd a34d7a144edb14c95baca80ae432cfc7 {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WGS.T.hg38 C3N-01715 PDA WGS tumor CPT0125090006 2a57792c-4ac1-4f1c-8434-2cd1b684d5f4_wgs_gdc_realn.bam 89120982662 BAM harmonized CPTAC3 1639b8b0-2e89-4f7e-a113-a3aea2fc7f39 8739cb2543d77cfd8a43bd8a38d550ce {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WXS.N C3N-01715 PDA WXS blood_normal CPT0125120002 CPT0125120002.WholeExome.RP-1303.bam 23804312726 BAM submitted_aligned CPTAC3 31d88f34-768c-41dd-aca2-22f189b4668f 76322ce739e70f8bcbc26ca164b393c4 {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01715.WXS.N.hg38 C3N-01715 PDA WXS blood_normal CPT0125120002 c59da17d-bed1-4cd9-a587-b069bb2fbd98_wxs_gdc_realn.bam 31759314272 BAM harmonized CPTAC3 a55589ba-d889-40ef-a423-1099c1b8cb1c 80db6048854c2134fae1ffb309d9ea6f {"aliquot_tag": "ALQ_403382bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01715.WXS.T C3N-01715 PDA WXS tumor CPT0125090006_1 CPT0125090006_1.WholeExome.RP-1303.bam 64103845444 BAM submitted_aligned CPTAC3 28f369f2-c626-4b72-9a93-b4e85df2e867 ef7ad7a27dee2584f36176daa0885235 {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WXS.T C3N-01715 PDA WXS tumor CPT0125090006 CPT0125090006.WholeExome.RP-1303.bam 29622750870 BAM submitted_aligned CPTAC3 0a78296a-afda-4d5b-bdc5-4dec554b09a7 52f4851f22903aeaddae1758d223c3e3 {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WXS.T.hg38 C3N-01715 PDA WXS tumor CPT0125090006_1 46f2d2eb-9dbe-4633-ae7c-f42ff9c953ac_wxs_gdc_realn.bam 87879341992 BAM harmonized CPTAC3 474b180d-fc20-4b5b-959f-9fcd2b0214bb 8e3e34479397c0a26b08799fd6db7eef {"aliquot_tag": "ALQ_b65ddd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01715.WXS.T.hg38 C3N-01715 PDA WXS tumor CPT0125090006 2a57792c-4ac1-4f1c-8434-2cd1b684d5f4_wxs_gdc_realn.bam 40051291662 BAM harmonized CPTAC3 3f4ee05c-bcfe-4084-88ba-36009f372315 af3f150ed24392fe0f8618259ebb7726 {"aliquot_tag": "ALQ_fbd2a410", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.MethArray.Green.T C3N-01716 PDA Methylation_Array tumor CPT0125130006 203027390089_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 96de3bf7-2501-4625-8694-abd6bda17efe bd7e1718b582b7ac5c3fa1ee0eb5a9fa {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.MethArray.Red.T C3N-01716 PDA Methylation_Array tumor CPT0125130006 203027390089_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 695c6dbe-a4de-4698-a215-59310409b416 f5dfc7e6b5d8e0361248263e34b96516 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.miRNA-Seq.S6_L001_R1.T C3N-01716 PDA miRNA-Seq tumor CPT0125130009 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L001_R1_001.unaln.bam 209900275 BAM S6_L001_R1 submitted_unaligned CPTAC3 84710192-48fa-4293-a887-fef6aa2a07c6 f0d3881f27af83966571257bdff707d3 {"aliquot_tag": "ALQ_ea817285", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.miRNA-Seq.T.hg38 C3N-01716 PDA miRNA-Seq tumor CPT0125130009 56c22a82-29ac-4cb9-8db9-062beaf34848_mirnaseq_gdc_realn.bam 229334850 BAM harmonized CPTAC3 f5cbf907-7fd4-4856-9a08-db59c6b8398f eedad6262a9fbd22b52cef4f41def3e5 {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.RNA-Seq.chimeric.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.chimeric.gdc_realn.bam 130856428 BAM chimeric harmonized CPTAC3 e6cc0533-fcbb-4036-b789-b4c030512d47 0de16c99ba2b53392c6d470496b71c9a {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.RNA-Seq.genomic.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.genomic.gdc_realn.bam 9344284403 BAM genomic harmonized CPTAC3 f1669bd6-85d6-4ccb-b8b1-3687e002ebb4 2d934450cdcf247b7225f74d4cf837b7 {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.RNA-Seq.S6_L007_R1.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R1_001.fastq.gz 4089443704 FASTQ S6_L007_R1 submitted_unaligned CPTAC3 f7fcf236-ffb2-45eb-a71c-1634ca49b8a9 12e1c9c5fab15b0dc1066db16e87cbea {"aliquot_tag": "ALQ_ea817285", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.RNA-Seq.S6_L007_R2.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R2_001.fastq.gz 4568315750 FASTQ S6_L007_R2 submitted_unaligned CPTAC3 7be2d14d-5e15-49a8-8ef7-e11a616c790d cd04d21c7dc1d4ae5d83dac0966aa32e {"aliquot_tag": "ALQ_ea817285", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.RNA-Seq.transcriptome.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.transcriptome.gdc_realn.bam 12148763635 BAM transcriptome harmonized CPTAC3 22e8dc0f-2c79-44b6-ae7b-8482ad961592 f71e25ad373f72cb8de289f189a78537 {"aliquot_tag": "ALQ_ea817285", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WGS.N C3N-01716 PDA WGS blood_normal CPT0125150002 CPT0125150002.WholeGenome.RP-1303.bam 64160844121 BAM submitted_aligned CPTAC3 4d4009ed-23c5-4946-90db-b78be50f1db7 858bf6ca884b34643d095974012c79f0 {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01716.WGS.N.hg38 C3N-01716 PDA WGS blood_normal CPT0125150002 d559c9d4-128c-4b40-b6aa-8018c5bab7cd_wgs_gdc_realn.bam 93452990656 BAM harmonized CPTAC3 ec4ca432-3017-4914-9bfd-bba1057bbf8d 3564369b62a92597b60cb635ce68ce6a {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01716.WGS.T C3N-01716 PDA WGS tumor CPT0125130006_1 CPT0125130006_1.WholeGenome.RP-1303.bam 112984625544 BAM submitted_aligned CPTAC3 df1e1ac3-bf16-4319-8145-d7991e95239b e80b435c37d5d857b9ca62496f238fec {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WGS.T C3N-01716 PDA WGS tumor CPT0125130006 CPT0125130006.WholeGenome.RP-1303.bam 62707163531 BAM submitted_aligned CPTAC3 dac65ad5-e77b-4e6b-8177-ef9bffc19783 79af179a7c7611e09fc258bedb5a4bd5 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WGS.T.hg38 C3N-01716 PDA WGS tumor CPT0125130006_1 aa7facc3-082f-4c94-aad8-76174a71eb5e_wgs_gdc_realn.bam 163635190398 BAM harmonized CPTAC3 df996520-9904-40f7-a562-1fd56e991b02 450adeabf3c32956248b8fbbfc74f28f {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WGS.T.hg38 C3N-01716 PDA WGS tumor CPT0125130006 6829de66-d838-4535-ad5a-1e4eed9bd1e5_wgs_gdc_realn.bam 91002326575 BAM harmonized CPTAC3 43a85ce0-b201-401e-87a3-f136a62c70a6 f27ca5673b00cb46f367d72a8b673521 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WXS.N C3N-01716 PDA WXS blood_normal CPT0125150002 CPT0125150002.WholeExome.RP-1303.bam 36480917647 BAM submitted_aligned CPTAC3 94dfd21c-c576-4dfa-bdc0-b8b8caf08d50 acfdf166244ff36e04df83f7ec616c67 {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01716.WXS.N.hg38 C3N-01716 PDA WXS blood_normal CPT0125150002 d559c9d4-128c-4b40-b6aa-8018c5bab7cd_wxs_gdc_realn.bam 50628328242 BAM harmonized CPTAC3 fe756545-6479-471f-9901-6c968bae0e38 ab8536a2f6407cb1315f83548f71a97a {"aliquot_tag": "ALQ_f2135ead", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01716.WXS.T C3N-01716 PDA WXS tumor CPT0125130006_1 CPT0125130006_1.WholeExome.RP-1303.bam 58999151386 BAM submitted_aligned CPTAC3 fad5b903-a31d-46be-a244-e58b951a5322 6406d28e65b0f9efec95ffee46e1f0e6 {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WXS.T C3N-01716 PDA WXS tumor CPT0125130006 CPT0125130006.WholeExome.RP-1303.bam 29020279025 BAM submitted_aligned CPTAC3 d6214338-ab13-4d10-a82b-b4797f655d26 e447f18bb3ebe794b97b415eac5c82ac {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WXS.T.hg38 C3N-01716 PDA WXS tumor CPT0125130006_1 aa7facc3-082f-4c94-aad8-76174a71eb5e_wxs_gdc_realn.bam 80258842211 BAM harmonized CPTAC3 c49a9363-b03b-4611-b687-43d3e8dd84cc 81670ac3325834aaf5fce2e65db21040 {"aliquot_tag": "ALQ_de8782fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01716.WXS.T.hg38 C3N-01716 PDA WXS tumor CPT0125130006 6829de66-d838-4535-ad5a-1e4eed9bd1e5_wxs_gdc_realn.bam 38866251818 BAM harmonized CPTAC3 73aee70d-f568-490b-b5b1-887096902e85 59d4e8620f4729b6026fb59e99336899 {"aliquot_tag": "ALQ_7a3e6f14", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.MethArray.Green.A C3N-01719 PDA Methylation_Array tissue_normal CPT0125160007 203561620054_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c087c478-9617-4191-ad12-fde079a19307 d90a3380a6d98c0bf4d33b51f370e86e {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.MethArray.Green.T C3N-01719 PDA Methylation_Array tumor CPT0161990008 203561450068_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 381e4082-d07e-4eee-a9a6-f0405d653282 73ceae3b8c9ba82b9b17891755f99741 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.MethArray.Red.A C3N-01719 PDA Methylation_Array tissue_normal CPT0125160007 203561620054_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 1affd762-3975-4c4a-bab0-8754e36d9f6e bf632d2525d9aa4a27807ed2cf3144c8 {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.MethArray.Red.T C3N-01719 PDA Methylation_Array tumor CPT0161990008 203561450068_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 dd85fe82-e335-46ca-be66-41247f068859 708c6700e9dd189502970b87b69a6fb8 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.miRNA-Seq.A.hg38 C3N-01719 PDA miRNA-Seq tissue_normal CPT0125160010 eaacb831-eafb-485b-a1ae-1c7acd602af0_mirnaseq_gdc_realn.bam 479096900 BAM harmonized CPTAC3 b5a5eabc-b9ba-4d63-9a23-41f148d61c7a d9411f7911eda733a69e9e14b177fd97 {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.miRNA-Seq.S21_L003_R1.A C3N-01719 PDA miRNA-Seq tissue_normal CPT0125160010 190813_UNC32-K00270_0196_AH5MCWBBXY_CCAACA_S21_L003_R1_001.unaln.bam 430530264 BAM S21_L003_R1 submitted_unaligned CPTAC3 6ab439ac-a160-47ce-8f46-e2d556724318 157fb50a64589bae713c76dd55e35f24 {"aliquot_tag": "ALQ_42a67410", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.miRNA-Seq.S47_L005_R1.T C3N-01719 PDA miRNA-Seq tumor CPT0161990011 190712_UNC32-K00270_0192_BH7HL3BBXY_GGTAGC_S47_L005_R1_001.unaln.bam 174581827 BAM S47_L005_R1 submitted_unaligned CPTAC3 88c1188a-e039-4870-91c4-42c33c358d64 1d7fb120874c63a2bd7268af4fcde9fa {"aliquot_tag": "ALQ_2ba77bd3", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.miRNA-Seq.T.hg38 C3N-01719 PDA miRNA-Seq tumor CPT0161990011 01886ee8-d131-471f-b2ee-551cdb80e6b3_mirnaseq_gdc_realn.bam 194806076 BAM harmonized CPTAC3 0a9da40d-bab3-47ac-bf83-46a8ca1c3496 c6b8bfbfd2a8dabb459856e522459f21 {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.RNA-Seq.chimeric.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.chimeric.gdc_realn.bam 48898087 BAM chimeric harmonized CPTAC3 44bbf404-8cea-4597-bfa0-21fff2028707 1c8ad1490fa26390389eb69e60bd12ea {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.RNA-Seq.chimeric.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.chimeric.gdc_realn.bam 26467013 BAM chimeric harmonized CPTAC3 f9cdea28-205d-4abf-a77b-eef9b33c1ccf 085851b27aad0078844bb59285e0c42a {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.RNA-Seq.genomic.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.genomic.gdc_realn.bam 10527188458 BAM genomic harmonized CPTAC3 f28ffe33-c1aa-4562-bbb8-28d58e2ea85a 102dcfdbf9a42267b09613808bc81361 {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.RNA-Seq.genomic.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.genomic.gdc_realn.bam 6925871959 BAM genomic harmonized CPTAC3 40ac005e-2f67-477d-898e-158cd4976fa1 78bab2bde37e5909a1f2df5efe4f93f4 {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.RNA-Seq.S22_L006_R1.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R1_001.fastq.gz 4871038110 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 7fd03820-fc9b-4b52-b9e3-4101e9df0c6f f612fd652c87f1330fa8933bc0d3c94d {"aliquot_tag": "ALQ_42a67410", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.RNA-Seq.S22_L006_R2.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R2_001.fastq.gz 5487729066 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 45781656-43b0-4ca4-a6e3-26d7f2872ba7 9ed1ff0c40662b85f3bcac59b5465780 {"aliquot_tag": "ALQ_42a67410", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.RNA-Seq.S9_L003_R1.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R1_001.fastq.gz 3189427831 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 d7440a99-7aa5-460e-9b8c-4dbca84af7a8 9b48373571c2b20415765a8521f28f2f {"aliquot_tag": "ALQ_2ba77bd3", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.RNA-Seq.S9_L003_R2.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R2_001.fastq.gz 3511679826 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 17b70038-d642-4bc9-a9ea-3c94ba247cd0 1a22e1f53f58e10b0bb8e4246ae9b615 {"aliquot_tag": "ALQ_2ba77bd3", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.RNA-Seq.transcriptome.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.transcriptome.gdc_realn.bam 13527028690 BAM transcriptome harmonized CPTAC3 def6906a-7923-4830-a7d2-f24b55470667 cdb17b916942260e2484e619d82cfa64 {"aliquot_tag": "ALQ_42a67410", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.RNA-Seq.transcriptome.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.transcriptome.gdc_realn.bam 8238646320 BAM transcriptome harmonized CPTAC3 9b1c4ae8-b4d0-479d-9bce-ef13632cac62 c8d437d2c0b2b1b76166c17693ca59f7 {"aliquot_tag": "ALQ_2ba77bd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.WGS.N C3N-01719 PDA WGS blood_normal CPT0125200002 CPT0125200002.WholeGenome.RP-1303.bam 86834854314 BAM submitted_aligned CPTAC3 beea60f6-8d50-4d46-a077-c295eb1ca867 48fd130658b13901bb4cce8b1eb3813d {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01719.WGS.N.hg38 C3N-01719 PDA WGS blood_normal CPT0125200002 a9cb0d1b-dea9-4440-a945-0a4aa97b6a24_wgs_gdc_realn.bam 127114598944 BAM harmonized CPTAC3 f80ca744-7441-48f8-9761-19b26049e20d b14e6862c0be73409e7ad989913a2337 {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01719.WGS.T C3N-01719 PDA WGS tumor CPT0161990008 CPT0161990008.WholeGenome.RP-1303.bam 149898222072 BAM submitted_aligned CPTAC3 aecfe902-4ccf-4403-9d48-b4bda4fc0b37 f1fb27518ebe0e586ffdb7b69c7d264b {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.WGS.T.hg38 C3N-01719 PDA WGS tumor CPT0161990008 bd0b84ec-313f-4a15-9491-cbcb8d97f189_wgs_gdc_realn.bam 220624519863 BAM harmonized CPTAC3 f5fd7522-f3b8-47a9-9a6e-028426acc995 0ff160f2f68bb6d058f944db63086be7 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.WXS.A C3N-01719 PDA WXS tissue_normal CPT0125160007 CPT0125160007.WholeExome.RP-1303.bam 23938241477 BAM submitted_aligned CPTAC3 9d2d951a-57b7-4040-8afd-260728dba266 597e534d54ea5384126b5e0df3c7d73f {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.WXS.A.hg38 C3N-01719 PDA WXS tissue_normal CPT0125160007 85b9f49a-a114-4bdb-aa59-2f57d9117f51_wxs_gdc_realn.bam 32779317022 BAM harmonized CPTAC3 9237880a-f89a-42c1-ab7e-9b4732aad563 88da1d7f8d96b3637c4475eb0cc4d414 {"aliquot_tag": "ALQ_c5d9d0f2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01719.WXS.N C3N-01719 PDA WXS blood_normal CPT0125200002 CPT0125200002.WholeExome.RP-1303.bam 27241943774 BAM submitted_aligned CPTAC3 0e7dca58-c3cf-4a42-963e-1969c7c57c0c 857fd1596d3393d64b5fae2f53851f9c {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01719.WXS.N.hg38 C3N-01719 PDA WXS blood_normal CPT0125200002 a9cb0d1b-dea9-4440-a945-0a4aa97b6a24_wxs_gdc_realn.bam 38033151342 BAM harmonized CPTAC3 5de9bb5e-a680-4888-9757-f4fa69f9f585 3ec297ed7487a88a8af62d1ebaf8c049 {"aliquot_tag": "ALQ_bc67a373", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01719.WXS.T C3N-01719 PDA WXS tumor CPT0161990008 CPT0161990008.WholeExome.RP-1303.bam 50455480829 BAM submitted_aligned CPTAC3 e1c124ef-1e57-4304-ada8-a6f92402eea6 5861c531e4a3bde6cd2906f22dd77835 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01719.WXS.T.hg38 C3N-01719 PDA WXS tumor CPT0161990008 bd0b84ec-313f-4a15-9491-cbcb8d97f189_wxs_gdc_realn.bam 69027660694 BAM harmonized CPTAC3 f32add39-bf86-4ee6-8e59-98bea595086e d497ae1bd18e30204af09b1408ae6293 {"aliquot_tag": "ALQ_4b60f236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.MethArray.Green.T C3N-01752 HNSCC Methylation_Array tumor CPT0162940006 203271750083_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 cee81968-a447-4836-b571-5a2dfd074ea9 9b67ff2f8482190d6b054c7b4162907b {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.MethArray.Red.T C3N-01752 HNSCC Methylation_Array tumor CPT0162940006 203271750083_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 4b3113d6-a977-4791-a941-9701b00d2b76 fc652cf2bcee4081a03d6ea4181dd473 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.miRNA-Seq.S21_L001_R1.T C3N-01752 HNSCC miRNA-Seq tumor CPT0162940009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L001_R1_001.unaln.bam 171368662 BAM S21_L001_R1 submitted_unaligned CPTAC3 4e14e11b-fcc3-4c79-904a-a5bb603036dd 80b48990c008bbde7aa68097a8c83128 {"aliquot_tag": "ALQ_f51f1c8c", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.miRNA-Seq.T.hg38 C3N-01752 HNSCC miRNA-Seq tumor CPT0162940009 4dc7f05e-c4b6-4e17-9370-de3c2a54380f_mirnaseq_gdc_realn.bam 191643961 BAM harmonized CPTAC3 fcb9b00a-8ad6-4fc1-812f-81ad040cd6bb a199bf399cf2ab06e10bd3e9d4ca7c2d {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.RNA-Seq.chimeric.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.chimeric.gdc_realn.bam 217632269 BAM chimeric harmonized CPTAC3 cc713f7c-4cac-4f7a-89bb-52d6c1a7a09f 3264cedf153212c0eb706574efb01785 {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.RNA-Seq.genomic.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.genomic.gdc_realn.bam 8561737964 BAM genomic harmonized CPTAC3 5d609718-c470-43ef-b8dd-0286de2c21be 30bd6fa523cef30d2db2939fc664890e {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.RNA-Seq.S20_L005_R1.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4055071799 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 f6ca52a8-000d-43e0-87b2-f7707ab8347b 0c4e47083c1c24e31605875fe092435c {"aliquot_tag": "ALQ_f51f1c8c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.RNA-Seq.S20_L005_R2.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4346231843 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 edaae8f5-877b-408e-8b20-2b104ac9ddbb 3e583623374650b560a912241ab8cfe8 {"aliquot_tag": "ALQ_f51f1c8c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.RNA-Seq.transcriptome.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.transcriptome.gdc_realn.bam 11466253419 BAM transcriptome harmonized CPTAC3 75211923-e05f-4313-8c87-4f334cb7d319 61f1050eb4a690eaea6615f29fd84f56 {"aliquot_tag": "ALQ_f51f1c8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.WGS.N C3N-01752 HNSCC WGS blood_normal CPT0162970002 CPT0162970002.WholeGenome.RP-1303.bam 67851793377 BAM submitted_aligned CPTAC3 8e71c071-5743-4e88-8411-cd479a1c3133 79c74a4551cdb40d3a3ea69a9f39447b {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01752.WGS.N.hg38 C3N-01752 HNSCC WGS blood_normal CPT0162970002 2e8363b7-12e5-40bf-aff4-a47942232f8d_wgs_gdc_realn.bam 101033808844 BAM harmonized CPTAC3 9b125e0c-511d-4fc0-beeb-adf2bc0e1ecf d7ef93642e6f00fa091dc41340f1e654 {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01752.WGS.T C3N-01752 HNSCC WGS tumor CPT0162940006 CPT0162940006.WholeGenome.RP-1303.bam 87748333715 BAM submitted_aligned CPTAC3 f0ba9c35-1712-4d1b-8533-8bfa57dd5735 e63a670ef3d7f88ffe20f824e4babedf {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.WGS.T.hg38 C3N-01752 HNSCC WGS tumor CPT0162940006 4df14fe1-c17a-4e6b-87f0-c446f263ae38_wgs_gdc_realn.bam 128733006630 BAM harmonized CPTAC3 74f34b67-2d31-4aa6-bb6c-34fd90fe1d0e 3283a9bd5111d12924fde3ef8e7145c0 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.WXS.N C3N-01752 HNSCC WXS blood_normal CPT0162970002 CPT0162970002.WholeExome.RP-1303.bam 23602083271 BAM submitted_aligned CPTAC3 c3b2a4a8-d8d2-4bef-8a07-ef61b8a54a78 7e996dd98326ac7e8081be6c053fc678 {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01752.WXS.N.hg38 C3N-01752 HNSCC WXS blood_normal CPT0162970002 2e8363b7-12e5-40bf-aff4-a47942232f8d_wxs_gdc_realn.bam 33069119031 BAM harmonized CPTAC3 a8942d02-b9cd-4d00-ba62-f6dc124402be e01ba8dfecef82bdec002d4d3f01a26d {"aliquot_tag": "ALQ_256dbfd4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01752.WXS.T C3N-01752 HNSCC WXS tumor CPT0162940006 CPT0162940006.WholeExome.RP-1303.bam 20149858408 BAM submitted_aligned CPTAC3 6913de03-2b0c-4c9d-b8a2-2cee2668fb83 5983c3d8063873bd61e01b758528bf03 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01752.WXS.T.hg38 C3N-01752 HNSCC WXS tumor CPT0162940006 4df14fe1-c17a-4e6b-87f0-c446f263ae38_wxs_gdc_realn.bam 29031821383 BAM harmonized CPTAC3 ea558531-587f-404c-a08e-cbe39c9b03f0 69aec0b05f85fa46a14fbd5cdb1d3179 {"aliquot_tag": "ALQ_65a0011d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.MethArray.Green.A C3N-01754 HNSCC Methylation_Array tissue_normal CPT0163020006 203271740156_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 fd8259b5-780c-4f73-9d9a-580b4443cde9 a268bb87d75e8fabd4070ff08947bce6 {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.MethArray.Green.T C3N-01754 HNSCC Methylation_Array tumor CPT0162990007 203281980233_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 52d5b189-f590-46a5-83c6-663ede6b13b8 d45d5362055a2d77f44a21a334e3fa35 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.MethArray.Red.A C3N-01754 HNSCC Methylation_Array tissue_normal CPT0163020006 203271740156_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 47015960-95f9-4ddb-9bdd-7fce2d50946e 17fc3645d22d369595cc56436d5f5e8f {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.MethArray.Red.T C3N-01754 HNSCC Methylation_Array tumor CPT0162990007 203281980233_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 17b305bc-75ba-4ad7-87e7-55943eb8eddc 5b8cbc51c6896dc505e722a85036bdeb {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.miRNA-Seq.A.hg38 C3N-01754 HNSCC miRNA-Seq tissue_normal CPT0163020009 b057f690-52ee-4a86-af00-1344904d8404_mirnaseq_gdc_realn.bam 250774515 BAM harmonized CPTAC3 c769f577-7183-4848-b8b2-4bc3e38b8fbc 9027404c1361dfd9654cf2fe57062530 {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.miRNA-Seq.S22_L001_R1.T C3N-01754 HNSCC miRNA-Seq tumor CPT0162990010 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L001_R1_001.unaln.bam 189109293 BAM S22_L001_R1 submitted_unaligned CPTAC3 6f601b8f-a42a-48c7-9b2f-296cdb34b915 c6a200ce6e7292ce309fc72e10c64a7b {"aliquot_tag": "ALQ_6d4851d8", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.miRNA-Seq.S42_L002_R1.A C3N-01754 HNSCC miRNA-Seq tissue_normal CPT0163020009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAATCG_S42_L002_R1_001.unaln.bam 215874336 BAM S42_L002_R1 submitted_unaligned CPTAC3 c80b514a-5c48-454c-8208-e8471e89d67f aa554a59dd05363734346659c26468ae {"aliquot_tag": "ALQ_fb27b350", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.miRNA-Seq.T.hg38 C3N-01754 HNSCC miRNA-Seq tumor CPT0162990010 a8d10f17-0be5-4947-b08e-d1c47ea5c30b_mirnaseq_gdc_realn.bam 207342619 BAM harmonized CPTAC3 5d56a44a-6ab9-4977-ad82-7d40c39779a9 c2e4282ddca1727a7456494a5d658441 {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.chimeric.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.chimeric.gdc_realn.bam 141759436 BAM chimeric harmonized CPTAC3 02ab9e2a-d1e1-440f-851b-96955aa885ee 207ba061a3c30b2262f09014783e042f {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.RNA-Seq.chimeric.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.chimeric.gdc_realn.bam 182730586 BAM chimeric harmonized CPTAC3 4c130270-5cf6-4cad-bc72-aa0b4caba746 fcf134c12d305d04ac890446898d5de0 {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.chimeric.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.chimeric.gdc_realn.bam 142744166 BAM chimeric harmonized CPTAC3 76d3b48f-b997-43ae-984a-107224b6f9e9 4ae96a67ea9e7449e40e4b77a9b04e61 {"aliquot_tag": "ALQ_9f36d02a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.genomic.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.genomic.gdc_realn.bam 7758351009 BAM genomic harmonized CPTAC3 65bd130c-cb92-4001-8450-6789583a5850 785150c87528f618c6be7525b9ddd9ef {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.RNA-Seq.genomic.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.genomic.gdc_realn.bam 8485660291 BAM genomic harmonized CPTAC3 9bf930d0-d4f8-4f8e-a83a-194e4cd33620 e5ce8686a3e84fe39af6fc59cb3cbebf {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.genomic.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.genomic.gdc_realn.bam 6921450695 BAM genomic harmonized CPTAC3 e07766fc-7035-4282-b47d-aefe9f04c029 bb246e62bfef2231e43230c502457fff {"aliquot_tag": "ALQ_9f36d02a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.S14_L006_R1.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R1_001.fastq.gz 3832460782 FASTQ S14_L006_R1 submitted_unaligned CPTAC3 d4cfe46e-ebcc-401f-a98b-739401e778aa 6214a5cc052b99b9057f6e2e290dfcd2 {"aliquot_tag": "ALQ_fb27b350", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.RNA-Seq.S14_L006_R2.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R2_001.fastq.gz 3813959170 FASTQ S14_L006_R2 submitted_unaligned CPTAC3 e93a68b4-767b-49b3-b6d8-939cec972089 739fef87eb7a11c78a7ff02560f6d14a {"aliquot_tag": "ALQ_fb27b350", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.RNA-Seq.S22_L006_R1.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R1_001.fastq.gz 3863264626 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 af97e771-a0cb-4a7d-896a-66e299b7eac2 b43b2d7eccb2945dfbb9e663d7ceff23 {"aliquot_tag": "ALQ_6d4851d8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.S22_L006_R2.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R2_001.fastq.gz 4289613358 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 8b7f9302-5656-4fe6-9a50-4d83225a59f5 22a274eb2884c836742e5b6b116bc7cf {"aliquot_tag": "ALQ_6d4851d8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.S90_R1.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R1_001.fastq.gz 3836235190 FASTQ S90_R1 submitted_unaligned CPTAC3 6b2470c7-e0c1-4387-bd3b-87c780218925 645c4f11db003c223ee791fb6a72d708 {"aliquot_tag": "ALQ_9f36d02a", "sample": "S90", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.S90_R2.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R2_001.fastq.gz 3938439570 FASTQ S90_R2 submitted_unaligned CPTAC3 36a2c727-a757-4e55-a2f6-da1b0898cdcd 4e11fc4d3690ee8f5fc16ef3f1300017 {"aliquot_tag": "ALQ_9f36d02a", "sample": "S90", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.transcriptome.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.transcriptome.gdc_realn.bam 10282689117 BAM transcriptome harmonized CPTAC3 99561aeb-7d39-40ea-92c1-2e5060c84251 a3833e52a0d6fc49fca7af8df7ffd75a {"aliquot_tag": "ALQ_fb27b350", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.RNA-Seq.transcriptome.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.transcriptome.gdc_realn.bam 11475869023 BAM transcriptome harmonized CPTAC3 176ee300-990a-4cf1-b40e-fc077d1d180e ce706e7c2b5a66f8cb319c18ab548018 {"aliquot_tag": "ALQ_6d4851d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.RNA-Seq.transcriptome.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.transcriptome.gdc_realn.bam 3907193336 BAM transcriptome harmonized CPTAC3 f9302afa-b221-4444-83d6-73faae71f927 143d506f7ab4b0e2350b9f3101e28585 {"aliquot_tag": "ALQ_9f36d02a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.WGS.N C3N-01754 HNSCC WGS blood_normal CPT0163080002 CPT0163080002.WholeGenome.RP-1303.bam 68524076907 BAM submitted_aligned CPTAC3 5d2d1978-b431-4cae-90bb-0fd8d4973701 2d585e4ad878b6955543b215be5eb753 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01754.WGS.N.hg38 C3N-01754 HNSCC WGS blood_normal CPT0163080002 118ac7c7-48cf-4449-b118-2125f7f1981f_wgs_gdc_realn.bam 100652972763 BAM harmonized CPTAC3 c6c9bf4d-09b1-4673-8ab2-e58962ff37e1 db1f8f14e9762407d5c901ede55baa98 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01754.WGS.T C3N-01754 HNSCC WGS tumor CPT0162990007 CPT0162990007.WholeGenome.RP-1303.bam 76877530042 BAM submitted_aligned CPTAC3 07f00f7c-9d9c-4b4e-a4c3-4c510356310c ef391be7a62b7419e38b55d1cacaf958 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.WGS.T.hg38 C3N-01754 HNSCC WGS tumor CPT0162990007 02c3ef5f-8760-4271-87a0-0a2707052a5a_wgs_gdc_realn.bam 132102313727 BAM harmonized CPTAC3 f507b73d-7c6d-4d7d-b4c4-9b0b24d2bc2b 605f6db36bf308d57d3064211b30c0fe {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.WXS.A C3N-01754 HNSCC WXS tissue_normal CPT0163020006 CPT0163020006.WholeExome.RP-1303.bam 25376240581 BAM submitted_aligned CPTAC3 5e4c0a2e-f3e1-4b6f-a542-3c3ee7c5c554 2e303c241cdb2eea93e650f34520b3cc {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.WXS.A.hg38 C3N-01754 HNSCC WXS tissue_normal CPT0163020006 b962e3b3-62fa-4ac9-a9f1-014def117ab3_wxs_gdc_realn.bam 35041166735 BAM harmonized CPTAC3 ac9c50e7-5754-4d0d-8751-1cff95439ec6 b0e79a3199612790068edba25dcdde78 {"aliquot_tag": "ALQ_6b98aec1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01754.WXS.N C3N-01754 HNSCC WXS blood_normal CPT0163080002 CPT0163080002.WholeExome.RP-1303.bam 32215659231 BAM submitted_aligned CPTAC3 1d9d358d-d9f6-418b-b575-4f439832d12a dfdf0ffe160b744cc7e5f714dc40cd88 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01754.WXS.N.hg38 C3N-01754 HNSCC WXS blood_normal CPT0163080002 118ac7c7-48cf-4449-b118-2125f7f1981f_wxs_gdc_realn.bam 44266731613 BAM harmonized CPTAC3 1f91a385-f3d2-422b-889c-ab6082d61e52 6f4286e3f4321a158131048f268a4be1 {"aliquot_tag": "ALQ_26457279", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01754.WXS.T C3N-01754 HNSCC WXS tumor CPT0162990007 CPT0162990007.WholeExome.RP-1303.bam 17843511054 BAM submitted_aligned CPTAC3 98fa6130-45b4-4cdd-8a80-4a68fb0a4216 e7c506548e79fb72f37c011bd3f672b3 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01754.WXS.T.hg38 C3N-01754 HNSCC WXS tumor CPT0162990007 02c3ef5f-8760-4271-87a0-0a2707052a5a_wxs_gdc_realn.bam 24369329299 BAM harmonized CPTAC3 31cb964e-73ec-4ca0-a4c2-9ef0f2da419f 1d4e18bbc319f81b2d3569431e9fe133 {"aliquot_tag": "ALQ_ea37f53a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.MethArray.Green.T C3N-01755 HNSCC Methylation_Array tumor CPT0163090006 203273200080_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 5b673dc6-ee15-49c0-84a6-71083657bfbd 7e4eff52d55363d2bcf2a4fba766f1bc {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.MethArray.Red.T C3N-01755 HNSCC Methylation_Array tumor CPT0163090006 203273200080_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 798ee12d-3c64-437c-a999-af1488aebc5a 46a0ec3d74e8d77d3afe4e557a5322c2 {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.miRNA-Seq.S23_L001_R1.T C3N-01755 HNSCC miRNA-Seq tumor CPT0163090009 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L001_R1_001.unaln.bam 271792516 BAM S23_L001_R1 submitted_unaligned CPTAC3 77b1cbbc-429b-45c8-bc50-7762ef2f9922 f1633c24c8f6a16f0888695c6b09ed07 {"aliquot_tag": "ALQ_8cf78241", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.miRNA-Seq.T.hg38 C3N-01755 HNSCC miRNA-Seq tumor CPT0163090009 2a192c9b-07c9-4163-958b-57d3bc3ddbee_mirnaseq_gdc_realn.bam 298822179 BAM harmonized CPTAC3 614e9b9a-cef5-4b25-a09a-3f3ad462b0e7 8a0740b1f50220f6a4d006fbba53c07f {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.chimeric.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.chimeric.gdc_realn.bam 165938350 BAM chimeric harmonized CPTAC3 1230fb10-422d-4076-88cb-964bca063698 ed18288f45ca8bb20af51834d41d9b1f {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.chimeric.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.chimeric.gdc_realn.bam 183814197 BAM chimeric harmonized CPTAC3 5e38cf37-2f23-4d07-9d7d-4d43ceda7c6d 16c969215f854f9507854654c670f4a0 {"aliquot_tag": "ALQ_a256f99a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.genomic.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.genomic.gdc_realn.bam 11109404070 BAM genomic harmonized CPTAC3 d27f57ed-3113-49ab-822f-e811b1abcec8 bb0a518a001f03c3dc6f066c95e40c72 {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.genomic.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.genomic.gdc_realn.bam 9091441744 BAM genomic harmonized CPTAC3 c0c1afd7-4ab6-4bb9-9a44-d4ff12488872 1e3e4aaf4b1647379c9d0eb6111644f2 {"aliquot_tag": "ALQ_a256f99a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.S21_L006_R1.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R1_001.fastq.gz 4865120242 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 fe2ef44e-d4b5-4119-843d-c7f4047f82ea a743e8147f3807730de8129af6705aaa {"aliquot_tag": "ALQ_8cf78241", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.S21_L006_R2.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R2_001.fastq.gz 5301083450 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 fd70ab7f-7652-400a-9222-1d3fec1fc580 164dede06e6e1462b7663a355068312b {"aliquot_tag": "ALQ_8cf78241", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.S61_R1.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R1_001.fastq.gz 5870695173 FASTQ S61_R1 submitted_unaligned CPTAC3 175fb4bd-7530-490b-84b6-2e2669256990 67d0da3974f080b750ae122e8c4de96a {"aliquot_tag": "ALQ_a256f99a", "sample": "S61", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.S61_R2.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R2_001.fastq.gz 6017065335 FASTQ S61_R2 submitted_unaligned CPTAC3 45d4f121-899e-4877-a7cf-8eb9617a5d05 ad53282e4fd80dc2aa0b2cc8997a52ca {"aliquot_tag": "ALQ_a256f99a", "sample": "S61", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.transcriptome.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.transcriptome.gdc_realn.bam 11160398861 BAM transcriptome harmonized CPTAC3 8f26ef32-2a57-45db-8ca4-ccbf3f0c453d ed1258df52579d196a8ef381b2867a8c {"aliquot_tag": "ALQ_8cf78241", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.RNA-Seq.transcriptome.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.transcriptome.gdc_realn.bam 4860758086 BAM transcriptome harmonized CPTAC3 7df9b81e-b688-4886-866e-5fb5496c8be6 2232cc93ba3e23ad8de0c1c61c57e641 {"aliquot_tag": "ALQ_a256f99a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.WGS.N C3N-01755 HNSCC WGS blood_normal CPT0163150002 CPT0163150002.WholeGenome.RP-1303.bam 90072258813 BAM submitted_aligned CPTAC3 ba76ad94-33d5-47f9-97e8-8d13fb5f0c9b 2af15170c9c0e6abcffb14d07be53d87 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01755.WGS.N.hg38 C3N-01755 HNSCC WGS blood_normal CPT0163150002 ab796511-b5ad-401b-af77-1583a2273bb4_wgs_gdc_realn.bam 131476851643 BAM harmonized CPTAC3 c1331273-78f4-40df-b7d8-55a57bc46e7f 3c42750d1db0f5c16f5507a95a9fc479 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01755.WGS.T C3N-01755 HNSCC WGS tumor CPT0163090006 CPT0163090006.WholeGenome.RP-1303.bam 65888306801 BAM submitted_aligned CPTAC3 abe6381e-ea03-4044-9ceb-2b0e6393cfc1 8f02180b50361ba121a4c0e3b43e7e8e {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.WGS.T.hg38 C3N-01755 HNSCC WGS tumor CPT0163090006 0a44b5eb-c1f8-458a-bf5a-c5b271c33b70_wgs_gdc_realn.bam 96552388545 BAM harmonized CPTAC3 c7d37e41-e5ca-40a8-a9f7-42dffcb67d13 1a2a39bfaef7ea38e3ba5c4ac93fdeb5 {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.WXS.N C3N-01755 HNSCC WXS blood_normal CPT0163150002 CPT0163150002.WholeExome.RP-1303.bam 46714098338 BAM submitted_aligned CPTAC3 939ae555-4d98-4774-977f-94c319b41038 351b26d9c0186691a461100bd39e2c00 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01755.WXS.N.hg38 C3N-01755 HNSCC WXS blood_normal CPT0163150002 ab796511-b5ad-401b-af77-1583a2273bb4_wxs_gdc_realn.bam 64202961090 BAM harmonized CPTAC3 ef05bf82-a1ea-4de3-b4a3-0c01cbb69399 93ccd481b2810ea69f0f2b3a1d6137b0 {"aliquot_tag": "ALQ_1589656d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01755.WXS.T C3N-01755 HNSCC WXS tumor CPT0163090006 CPT0163090006.WholeExome.RP-1303.bam 23401835796 BAM submitted_aligned CPTAC3 1b4b3e6d-0872-4b18-8860-1848ffefb72d b1d9658d566e83e3de0008bf8253e429 {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01755.WXS.T.hg38 C3N-01755 HNSCC WXS tumor CPT0163090006 0a44b5eb-c1f8-458a-bf5a-c5b271c33b70_wxs_gdc_realn.bam 31654403378 BAM harmonized CPTAC3 8bce6ee3-599a-4e97-be74-24762ae5db6f 4b1e75f67473cf2231b23f88240ce0ab {"aliquot_tag": "ALQ_1c489fd0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.MethArray.Green.A C3N-01756 HNSCC Methylation_Array tissue_normal CPT0163170006 203271740101_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e225f4c7-7607-4b38-8e53-0fa0a413fcac 92595565cd0afa370077a87dafd6b023 {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.MethArray.Green.T C3N-01756 HNSCC Methylation_Array tumor CPT0163160006 203220070165_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 711c2bde-708e-402a-a72f-13d603b00731 76cfbef9154d92502b40de4f38026bbb {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.MethArray.Red.A C3N-01756 HNSCC Methylation_Array tissue_normal CPT0163170006 203271740101_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 6f0b98f8-916f-47f1-8998-3fd12e10acd2 0d106aeec6704f334cdeb4167ee952fc {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.MethArray.Red.T C3N-01756 HNSCC Methylation_Array tumor CPT0163160006 203220070165_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 7c8a2ad8-5938-4e4b-8d37-0e031453b902 54819fa4d23c593283a6b107b3616515 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.miRNA-Seq.A.hg38 C3N-01756 HNSCC miRNA-Seq tissue_normal CPT0163170009 19e8e372-fb4f-499d-8c88-a2b31e972d8c_mirnaseq_gdc_realn.bam 253991223 BAM harmonized CPTAC3 059a54bd-f339-4d60-be18-cb43885b8c85 8fe9bf37d29a2379db3a4e9739afb525 {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.miRNA-Seq.S140_L007_R1.A C3N-01756 HNSCC miRNA-Seq tissue_normal CPT0163170009 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTCAA_S140_L007_R1_001.unaln.bam 229952112 BAM S140_L007_R1 submitted_unaligned CPTAC3 10d2e3e5-cd4f-4d00-b869-aee21d96672d 4216a67ca58ec18008f1cb482469c611 {"aliquot_tag": "ALQ_f89bef85", "sample": "S140", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.miRNA-Seq.S24_L001_R1.T C3N-01756 HNSCC miRNA-Seq tumor CPT0163160009 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L001_R1_001.unaln.bam 229128711 BAM S24_L001_R1 submitted_unaligned CPTAC3 838f2435-633a-4f34-acc3-b31a76b12864 644c8eaf2790929ee8ccf5e5e9a91674 {"aliquot_tag": "ALQ_c5fbc635", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.miRNA-Seq.T.hg38 C3N-01756 HNSCC miRNA-Seq tumor CPT0163160009 bf05be90-584e-4841-b6e6-68354a29986c_mirnaseq_gdc_realn.bam 248953531 BAM harmonized CPTAC3 768ae306-0785-4c1e-84b0-13e4c5e23e4e 768c39c023ea5ac13d6e55319ea701fe {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.chimeric.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.chimeric.gdc_realn.bam 195183093 BAM chimeric harmonized CPTAC3 fb3a1a34-47d4-41a2-9840-2ac90a0fd0bd 580d652730f5f052d56206e258b0a44e {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.RNA-Seq.chimeric.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.chimeric.gdc_realn.bam 280921252 BAM chimeric harmonized CPTAC3 60cfcc3c-4ea7-4ee5-afd3-3451c3d4fcf1 3ea8b4c4a532de57f446efb35ae7730a {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.chimeric.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.chimeric.gdc_realn.bam 147196934 BAM chimeric harmonized CPTAC3 3c77b208-0aa8-4856-8741-373c50642acb ff98b5bc9248ce803ba89aa33688cdd2 {"aliquot_tag": "ALQ_5ac63d2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.genomic.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.genomic.gdc_realn.bam 8148333610 BAM genomic harmonized CPTAC3 8ac56e47-e5cb-464a-8f77-b33e3653f018 76bc5f3863158e3572d0b7d8266d5701 {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.RNA-Seq.genomic.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.genomic.gdc_realn.bam 9380607461 BAM genomic harmonized CPTAC3 64fd9568-ed5f-488a-8cde-ba1778e1ea70 1d727b820ec32474d7feb126cef9959b {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.genomic.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.genomic.gdc_realn.bam 7313736093 BAM genomic harmonized CPTAC3 d087eaf1-bde3-438f-80aa-f1e19f9c669c 630c11ea8dab3b85ee33cb1262285eb9 {"aliquot_tag": "ALQ_5ac63d2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.S14_L004_R1.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R1_001.fastq.gz 3885627609 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 59dd90d6-bda7-4356-b32f-0c5fc3170509 b753286ec64164f298d9dee9b938e891 {"aliquot_tag": "ALQ_f89bef85", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.RNA-Seq.S14_L004_R2.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R2_001.fastq.gz 4169497735 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 eea8501e-e2a6-4ab1-9dec-ff73840d93e5 41650dcd59d5446171cb145721f71e13 {"aliquot_tag": "ALQ_f89bef85", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.RNA-Seq.S24_L006_R1.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R1_001.fastq.gz 4370446501 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 67b4e0a3-b9b0-4f36-9f08-6b5a544abfff cebe1d27fdce64414536a9755b726e9b {"aliquot_tag": "ALQ_c5fbc635", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.S24_L006_R2.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R2_001.fastq.gz 4843574665 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 68c0adef-b7a8-41b1-8fc7-8939df30763a f04cca1f43f36d9a15137f91c4ca84fa {"aliquot_tag": "ALQ_c5fbc635", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.S45_R1.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R1_001.fastq.gz 4161633442 FASTQ S45_R1 submitted_unaligned CPTAC3 4c14151c-9555-4aa9-975e-9652d2429c48 e245541bdad36f7f9f3a42aa2bf0c124 {"aliquot_tag": "ALQ_5ac63d2b", "sample": "S45", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.S45_R2.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R2_001.fastq.gz 4236963203 FASTQ S45_R2 submitted_unaligned CPTAC3 31ba4176-8cb7-4442-894c-e9697bd16f21 e7feeaaf531b9e188c7429572e26d4d1 {"aliquot_tag": "ALQ_5ac63d2b", "sample": "S45", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.transcriptome.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.transcriptome.gdc_realn.bam 11200663129 BAM transcriptome harmonized CPTAC3 44adbe9b-c896-4695-ad3b-9c31bdcd13a1 954dda4d65d9056a5bc1b3aca3180288 {"aliquot_tag": "ALQ_f89bef85", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.RNA-Seq.transcriptome.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.transcriptome.gdc_realn.bam 10312504072 BAM transcriptome harmonized CPTAC3 8fd40137-13d6-4fb9-a480-cb1dbfccdd3b e5602b28b217fd3be4b5c00843d0f095 {"aliquot_tag": "ALQ_c5fbc635", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.RNA-Seq.transcriptome.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.transcriptome.gdc_realn.bam 3379953365 BAM transcriptome harmonized CPTAC3 727a5d61-988e-4921-b5ea-c6d36e3be4a3 9d1bb2608e74ff811cdc9ee75c8e69da {"aliquot_tag": "ALQ_5ac63d2b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.WGS.N C3N-01756 HNSCC WGS blood_normal CPT0163200002 CPT0163200002.WholeGenome.RP-1303.bam 64454668952 BAM submitted_aligned CPTAC3 99209135-2009-4af2-851a-1d61c139ef6b b19fe999fc0f8007c504f56c0751eaa8 {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01756.WGS.N.hg38 C3N-01756 HNSCC WGS blood_normal CPT0163200002 c77badda-9381-4940-8674-3eda70ed03ea_wgs_gdc_realn.bam 93971907616 BAM harmonized CPTAC3 927aecf9-5464-4e30-bcb2-551179520f5d 7a688ec5ea5ca4e302014c67e1bdcee2 {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01756.WGS.T C3N-01756 HNSCC WGS tumor CPT0163160006 CPT0163160006.WholeGenome.RP-1303.bam 68399522351 BAM submitted_aligned CPTAC3 8ef2515f-0df2-4358-98ca-4df8f9f70060 c22d04477ab00868481532da26247b62 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.WGS.T.hg38 C3N-01756 HNSCC WGS tumor CPT0163160006 abd4cd7f-f9c7-48a8-a1e9-91bdf9c6704c_wgs_gdc_realn.bam 101164426005 BAM harmonized CPTAC3 25c69788-e08d-4a9f-893a-07041682ebe2 aa77e1b478980c4c6bbc62931c964d22 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.WXS.A C3N-01756 HNSCC WXS tissue_normal CPT0163170006 CPT0163170006.WholeExome.RP-1303.bam 21672904598 BAM submitted_aligned CPTAC3 503c7d83-6aa5-4105-9dd6-f09a718b0d2d c91dd9d48cc8d9693afba8255152a320 {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.WXS.A.hg38 C3N-01756 HNSCC WXS tissue_normal CPT0163170006 812fea6a-1e8e-4c8f-b0f2-df82b26fd834_wxs_gdc_realn.bam 30269729084 BAM harmonized CPTAC3 8fc74d81-c8ce-4650-92f2-22a289d42340 a456e06f2657dfa0004c8b10bbabc1cf {"aliquot_tag": "ALQ_6824f214", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01756.WXS.N C3N-01756 HNSCC WXS blood_normal CPT0163200002 CPT0163200002.WholeExome.RP-1303.bam 24628461042 BAM submitted_aligned CPTAC3 098c3f50-5fbe-45b3-a800-14cb292de7d1 26ec6e77237172296f8dca3b1c1ed9ab {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01756.WXS.N.hg38 C3N-01756 HNSCC WXS blood_normal CPT0163200002 c77badda-9381-4940-8674-3eda70ed03ea_wxs_gdc_realn.bam 34170341333 BAM harmonized CPTAC3 90e6f055-e9a4-4727-9bc7-7c7df7e15765 76b3df88b77c62995023782d4cf25dd7 {"aliquot_tag": "ALQ_5bfd98b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01756.WXS.T C3N-01756 HNSCC WXS tumor CPT0163160006 CPT0163160006.WholeExome.RP-1303.bam 25152665330 BAM submitted_aligned CPTAC3 6fb1bbaf-7f74-4420-b7ce-e7802493a0ce c34ce0de399df2625b04a8f864e693b8 {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01756.WXS.T.hg38 C3N-01756 HNSCC WXS tumor CPT0163160006 abd4cd7f-f9c7-48a8-a1e9-91bdf9c6704c_wxs_gdc_realn.bam 35033284952 BAM harmonized CPTAC3 393039c1-e743-452b-bf0a-5a2debab8692 825c32edbe550ff36ea63da8c10d4d7b {"aliquot_tag": "ALQ_5544dba4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.MethArray.Green.T C3N-01757 HNSCC Methylation_Array tumor CPT0163240006 203271740101_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 618110c0-327a-429a-866f-b9e884fbb765 70e6fd217cffe45878100623e05f673f {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.MethArray.Red.T C3N-01757 HNSCC Methylation_Array tumor CPT0163240006 203271740101_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 9c684940-96c8-4018-b063-eb2fd95c9e04 4ef6d9f0925b30175be3c521b92257b7 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.miRNA-Seq.S25_L002_R1.T C3N-01757 HNSCC miRNA-Seq tumor CPT0163240009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L002_R1_001.unaln.bam 197110833 BAM S25_L002_R1 submitted_unaligned CPTAC3 292087bf-acec-4394-9743-7905306bd74a 90b328684e854a52d4482781ba765545 {"aliquot_tag": "ALQ_39afe7fb", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.miRNA-Seq.T.hg38 C3N-01757 HNSCC miRNA-Seq tumor CPT0163240009 e648a52b-8fba-4ec3-9a0e-b2a2f6600a60_mirnaseq_gdc_realn.bam 219188978 BAM harmonized CPTAC3 aeb8c092-8874-4f7d-bc06-626f7902510a d2ccd554a1236b877d8f454cd5b5e207 {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.RNA-Seq.chimeric.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.chimeric.gdc_realn.bam 234479172 BAM chimeric harmonized CPTAC3 fcec5f57-2288-4c9a-980f-c0eb5cafadc6 abffff79d4727c28775ff9c050465349 {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.RNA-Seq.genomic.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.genomic.gdc_realn.bam 9082605256 BAM genomic harmonized CPTAC3 e21368d2-a54c-4ae9-9064-b54feef82815 63c6615a0e3e7d9b9cd8ac288035518e {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.RNA-Seq.S3_L007_R1.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4456435372 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 fa0aa6e7-66b7-4300-83db-5680970620b3 9811c0b18649951530111ae9cf36a815 {"aliquot_tag": "ALQ_39afe7fb", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.RNA-Seq.S3_L007_R2.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R2_001.fastq.gz 4188669057 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 f8716479-1ab4-4100-b1fa-59c3f8922cd2 e37bf6cd9d6736f195f536ce47e8ef18 {"aliquot_tag": "ALQ_39afe7fb", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.RNA-Seq.transcriptome.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.transcriptome.gdc_realn.bam 11303429424 BAM transcriptome harmonized CPTAC3 95c13635-fd47-44eb-be6b-3c8d0c7f8fd7 9a359593232dbda74625654ee161544a {"aliquot_tag": "ALQ_39afe7fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.WGS.N C3N-01757 HNSCC WGS blood_normal CPT0163310002 CPT0163310002.WholeGenome.RP-1303.bam 72045264156 BAM submitted_aligned CPTAC3 c12255a9-3bbb-465f-80dc-ea9a6702842e 5045f8ebc4b48e92c338da6a9fa61050 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01757.WGS.N.hg38 C3N-01757 HNSCC WGS blood_normal CPT0163310002 104e39d5-8690-4b15-b5f5-d59f8f8117e8_wgs_gdc_realn.bam 104465276829 BAM harmonized CPTAC3 76f853cb-15ad-43a3-a3c7-dbc7c36a828f 6e505ac14e174b34778801ae3a7ff4b6 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01757.WGS.T C3N-01757 HNSCC WGS tumor CPT0163240006 CPT0163240006.WholeGenome.RP-1303.bam 61963563756 BAM submitted_aligned CPTAC3 8ffa4bbc-bd38-46c0-b96c-cb8840783e81 32b1d8d08fa1118ea663178b45569245 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.WGS.T.hg38 C3N-01757 HNSCC WGS tumor CPT0163240006 b6922176-2c86-437a-8530-b832b29a392d_wgs_gdc_realn.bam 91316151950 BAM harmonized CPTAC3 fb1b10c8-3c82-40a1-83a5-0c363c41b25f 748edfb5467804edc96b9a9672640f20 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.WXS.N C3N-01757 HNSCC WXS blood_normal CPT0163310002 CPT0163310002.WholeExome.RP-1303.bam 35096404020 BAM submitted_aligned CPTAC3 3e44b2e4-3dbd-42be-8058-a899a1b33a5a 5e5dd90c729d297f8e816320bfa32912 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01757.WXS.N.hg38 C3N-01757 HNSCC WXS blood_normal CPT0163310002 104e39d5-8690-4b15-b5f5-d59f8f8117e8_wxs_gdc_realn.bam 47410232633 BAM harmonized CPTAC3 43b3ce32-1437-49b1-a760-6a0e476b0f27 bfb41e408d6d8d6601b93ad01dc630a5 {"aliquot_tag": "ALQ_adc162a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01757.WXS.T C3N-01757 HNSCC WXS tumor CPT0163240006 CPT0163240006.WholeExome.RP-1303.bam 19741722869 BAM submitted_aligned CPTAC3 295f48f6-5bf7-46cd-9b50-5011fff28b64 b440f6a57a7b8bfb7bf95669998dc622 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01757.WXS.T.hg38 C3N-01757 HNSCC WXS tumor CPT0163240006 b6922176-2c86-437a-8530-b832b29a392d_wxs_gdc_realn.bam 27645739306 BAM harmonized CPTAC3 7e6b956e-8f44-4416-af18-96c17a6abd03 81ce7433412a87c151003c216ddf27e3 {"aliquot_tag": "ALQ_a910fa6a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.MethArray.Green.T C3N-01758 HNSCC Methylation_Array tumor CPT0163340006 203271740111_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e00d4928-893b-4614-bd9b-4080daa66c21 3598e54fa959b3135e57d6c92d510613 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.MethArray.Red.T C3N-01758 HNSCC Methylation_Array tumor CPT0163340006 203271740111_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 94e7b9ab-d0f6-4759-a33f-d91741a8c796 e3e77c0154bff2212e55300a9de15ec8 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.miRNA-Seq.S26_L002_R1.T C3N-01758 HNSCC miRNA-Seq tumor CPT0163340009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L002_R1_001.unaln.bam 245888549 BAM S26_L002_R1 submitted_unaligned CPTAC3 c4ab8dd9-f35e-475e-a125-01a53732ffa6 1cccc75c0018c79c439a6a73a48d9f18 {"aliquot_tag": "ALQ_f2f3345e", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.miRNA-Seq.T.hg38 C3N-01758 HNSCC miRNA-Seq tumor CPT0163340009 f4927550-6fdb-4c6c-9ee6-a72cc1bd0025_mirnaseq_gdc_realn.bam 271473254 BAM harmonized CPTAC3 051d9f95-1738-4cd2-ad4d-1b90b6815204 72e298a093bc37f5a74fff27e4794e11 {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.chimeric.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.chimeric.gdc_realn.bam 214732566 BAM chimeric harmonized CPTAC3 4f82a3e2-f949-4250-afd8-ad5e143f5b36 d2c5044039e9083ce18bde188937eb3c {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.chimeric.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.chimeric.gdc_realn.bam 198674862 BAM chimeric harmonized CPTAC3 ccdf470d-cde2-428b-93d1-9eae51c2adb0 a63449d3e2dce686b5841c84d2947c0e {"aliquot_tag": "ALQ_14a0319f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.genomic.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.genomic.gdc_realn.bam 8776393989 BAM genomic harmonized CPTAC3 d9a731b4-954a-4811-b9ae-7afcd3037edd d8d8e01a126f17b321d64f21d3a79cb6 {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.genomic.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.genomic.gdc_realn.bam 9092215231 BAM genomic harmonized CPTAC3 3cdf0a71-47d1-465b-ab61-64854cde2bf9 9e42d32de0291c1aa3a1cc024e6cc2c3 {"aliquot_tag": "ALQ_14a0319f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.S2_L007_R1.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4295548882 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 11c566e5-9dbf-446c-8f74-2a5bccdc5ac7 53b952aab417d6ab6a6e086e5d1aeb8f {"aliquot_tag": "ALQ_f2f3345e", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.S2_L007_R2.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R2_001.fastq.gz 4544028689 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 7c46b56e-2c5b-4ccb-bf95-18dc3cb1390e 2a9921abea7ff547f8aa1fe34ef1432d {"aliquot_tag": "ALQ_f2f3345e", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.S33_R1.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R1_001.fastq.gz 5425566184 FASTQ S33_R1 submitted_unaligned CPTAC3 30c2b78b-555a-4bfc-86eb-aff6b94506f7 20ec7f1cbac62077da367c1fa960d1f1 {"aliquot_tag": "ALQ_14a0319f", "sample": "S33", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.S33_R2.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R2_001.fastq.gz 5524554250 FASTQ S33_R2 submitted_unaligned CPTAC3 5638036a-5c90-41ee-b2f8-67671837706b 1ccf6c7d24a56f0ae7b025fae28c93b6 {"aliquot_tag": "ALQ_14a0319f", "sample": "S33", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.transcriptome.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.transcriptome.gdc_realn.bam 12095043441 BAM transcriptome harmonized CPTAC3 9c9f2c11-d6fd-40c1-b267-94044a71e3f8 05ead149aefbf969aa912bb72037e1df {"aliquot_tag": "ALQ_f2f3345e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.RNA-Seq.transcriptome.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.transcriptome.gdc_realn.bam 6425281428 BAM transcriptome harmonized CPTAC3 f2877e1d-b15b-469a-a877-15685a0dfdca ad6ebb179b44508c2bcd18429c2efa17 {"aliquot_tag": "ALQ_14a0319f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.WGS.N C3N-01758 HNSCC WGS blood_normal CPT0163400002 CPT0163400002.WholeGenome.RP-1303.bam 83248387366 BAM submitted_aligned CPTAC3 3265baad-dcb4-46ed-929e-2e48451ce84e 734ec99c1ab874a1ade79d3e5bce0e6e {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01758.WGS.N.hg38 C3N-01758 HNSCC WGS blood_normal CPT0163400002 3bff291b-fc59-4261-816f-264d8247eb38_wgs_gdc_realn.bam 121567166996 BAM harmonized CPTAC3 c48e7a95-4c0b-4191-81b0-6eac27d27aaa 8767fda59b163ec7263aac52830a032d {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01758.WGS.T C3N-01758 HNSCC WGS tumor CPT0163340006 CPT0163340006.WholeGenome.RP-1303.bam 74585642050 BAM submitted_aligned CPTAC3 62ad4766-ad0e-4024-b5be-613ac805d5ac 772ded85be81a3a286502c4c1154b936 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.WGS.T.hg38 C3N-01758 HNSCC WGS tumor CPT0163340006 da288743-2514-4bef-9456-63bfd6224913_wgs_gdc_realn.bam 112088611660 BAM harmonized CPTAC3 48f0a099-6792-436d-97f3-8e0905da65e6 54ce6a034a199f890c158a2420be96fd {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.WXS.N C3N-01758 HNSCC WXS blood_normal CPT0163400002 CPT0163400002.WholeExome.RP-1303.bam 50906037221 BAM submitted_aligned CPTAC3 e05468ae-4aec-42ad-aa00-8306b656316c a3ede04ed50c550ae44e2a0c2446299d {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01758.WXS.N.hg38 C3N-01758 HNSCC WXS blood_normal CPT0163400002 3bff291b-fc59-4261-816f-264d8247eb38_wxs_gdc_realn.bam 69409086967 BAM harmonized CPTAC3 02f74d73-e9f6-4502-b4ac-3b3b7128ce3b b2f349a75ffa56cd654aefcfb3c07f58 {"aliquot_tag": "ALQ_8da47bae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01758.WXS.T C3N-01758 HNSCC WXS tumor CPT0163340006 CPT0163340006.WholeExome.RP-1303.bam 20327565769 BAM submitted_aligned CPTAC3 fd801b39-f436-4c46-bbb4-d1015bc2dec3 770d7d67263eb7313270bb1531551617 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01758.WXS.T.hg38 C3N-01758 HNSCC WXS tumor CPT0163340006 da288743-2514-4bef-9456-63bfd6224913_wxs_gdc_realn.bam 27700702560 BAM harmonized CPTAC3 0053663d-6aaf-4a31-8b8f-7611df7de900 03fff39f64b72db04fc92ac91682b186 {"aliquot_tag": "ALQ_624c29cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01761.MethArray.Green.T C3N-01761 UCEC Methylation_Array tumor CPT0116710006 203219640158_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 58950107-2b51-4bed-9654-30ad10d5f09e 07ac57a491d0fe64f1b821797f5d52f4 {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.MethArray.Red.T C3N-01761 UCEC Methylation_Array tumor CPT0116710006 203219640158_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 3713ccdd-129e-4c9b-8683-2e5980a7567d b7519e324d8bcc39baeb1166333b70f1 {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.miRNA-Seq.A.hg38 C3N-01761 UCEC miRNA-Seq tissue_normal CPT0116730009 3a0d040b-67d0-4a02-82c3-afe2129baf17_mirnaseq_gdc_realn.bam 264592827 BAM harmonized CPTAC3 4a343a0d-1e14-47fd-85d9-7ecf27cee056 e0274b4d48a339bd29e0958b79ea5644 {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.miRNA-Seq.S45_L003_R1.A C3N-01761 UCEC miRNA-Seq tissue_normal CPT0116730009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L003_R1_001.unaln.bam 228410456 BAM S45_L003_R1 submitted_unaligned CPTAC3 c3d00ee5-d0ef-4272-b187-d073b65f7f2d 9afba40fa3197f03aa1e4bbcee8dafd2 {"aliquot_tag": "ALQ_83bf8ce6", "sample": "S45", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.miRNA-Seq.S46_L003_R1.T C3N-01761 UCEC miRNA-Seq tumor CPT0116710009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCCCGA_S46_L003_R1_001.unaln.bam 175878598 BAM S46_L003_R1 submitted_unaligned CPTAC3 2284d362-1b86-4416-b08f-95c2441c88f8 26e7bb1867ba683b1588de4756bc45af {"aliquot_tag": "ALQ_f97fdf86", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.miRNA-Seq.T.hg38 C3N-01761 UCEC miRNA-Seq tumor CPT0116710009 e4cb46c9-a54f-4838-9860-d36384265db7_mirnaseq_gdc_realn.bam 195992967 BAM harmonized CPTAC3 8a9e2af6-bdae-4e8f-b08e-737dd5b52c59 9cf3add7a1acb8bc48924a380e75dc94 {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.chimeric.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.chimeric.gdc_realn.bam 50744942 BAM chimeric harmonized CPTAC3 83a15a2f-e198-40c2-9c16-f9f53d36f7f4 efd557cca3aa8c5284c7985ab1b316b5 {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.RNA-Seq.chimeric.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.chimeric.gdc_realn.bam 36431681 BAM chimeric harmonized CPTAC3 922f1597-f852-4c6e-8415-ddc3f51d5b4c e5d1cdffbd2b747d47bba93eb8843997 {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.chimeric.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.chimeric.gdc_realn.bam 206912372 BAM chimeric harmonized CPTAC3 99f6e192-9456-4144-8673-005045437805 edc6a3d9ad80a2b855927d7813898f87 {"aliquot_tag": "ALQ_2923cf83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.genomic.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.genomic.gdc_realn.bam 10326755017 BAM genomic harmonized CPTAC3 5a30f7fd-5910-42b9-8c36-473fa3d2e791 73aa47b29052d2839d00750fc9a69faa {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.RNA-Seq.genomic.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.genomic.gdc_realn.bam 9471075829 BAM genomic harmonized CPTAC3 0c3362aa-e7d6-4e30-9ec9-da744b6a8437 4c135da72c91a28d6146959577fffa21 {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.genomic.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.genomic.gdc_realn.bam 9395719955 BAM genomic harmonized CPTAC3 3196a08d-8aca-4f7c-b711-5f7e9465dabd 8888b4c32fbdcb88ec766716d50ee0f3 {"aliquot_tag": "ALQ_2923cf83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.S18_L007_R1.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R1_001.fastq.gz 4435924861 FASTQ S18_L007_R1 submitted_unaligned CPTAC3 42123135-cc12-4961-990d-38bde0dc0f0d 819d746cab3ddc35dc35fccf3ebdc685 {"aliquot_tag": "ALQ_f97fdf86", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.S18_L007_R2.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R2_001.fastq.gz 4648359258 FASTQ S18_L007_R2 submitted_unaligned CPTAC3 8aed8995-cd70-4c88-b44f-be92eedfa7c9 a09e2841f30f85ff211aabbf2c123aa3 {"aliquot_tag": "ALQ_f97fdf86", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.S3_L001_R1.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R1_001.fastq.gz 4553195325 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 d3dcaa5c-6f97-4a6a-9391-455c3cab46ca 9c76744111118a6953639d6145b62c69 {"aliquot_tag": "ALQ_83bf8ce6", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.RNA-Seq.S3_L001_R2.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R2_001.fastq.gz 5127210148 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 f5c08b0d-bf9c-4952-8dea-e834e6c02edc ff58b4a0dd1a9e53732d303d7f6611c0 {"aliquot_tag": "ALQ_83bf8ce6", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.RNA-Seq.S92_R1.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R1_001.fastq.gz 6478850368 FASTQ S92_R1 submitted_unaligned CPTAC3 902b5df0-d437-4706-b0af-7e87fea36aa4 526c584a616a3d568f30c0ea96b7b86a {"aliquot_tag": "ALQ_2923cf83", "sample": "S92", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.S92_R2.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R2_001.fastq.gz 6705468787 FASTQ S92_R2 submitted_unaligned CPTAC3 9e1838eb-04b2-4c63-a3d6-25602e239f3e f939790c43a66ed171427d8cc3b9f3b5 {"aliquot_tag": "ALQ_2923cf83", "sample": "S92", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.transcriptome.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.transcriptome.gdc_realn.bam 12405732133 BAM transcriptome harmonized CPTAC3 adb0ccf7-5c4b-47d3-9fa5-e59b819a1b4b 3d38525275c7ae2a1b0b40a4615965c6 {"aliquot_tag": "ALQ_83bf8ce6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.RNA-Seq.transcriptome.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.transcriptome.gdc_realn.bam 12919620725 BAM transcriptome harmonized CPTAC3 01892a3d-1e9f-435b-96fc-8ebcb200b1b3 af3579cc4baa4b233a5e919420d68eaf {"aliquot_tag": "ALQ_f97fdf86", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.RNA-Seq.transcriptome.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.transcriptome.gdc_realn.bam 4966070757 BAM transcriptome harmonized CPTAC3 bedf9ed4-922b-40d5-8134-fb50b42fde92 dc82762cc97f79fa71605653368cee28 {"aliquot_tag": "ALQ_2923cf83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.WGS.A C3N-01761 UCEC WGS tissue_normal CPT0116730006 CPT0116730006.WholeGenome.RP-1303.bam 62080336140 BAM submitted_aligned CPTAC3 1000279b-f0e0-4fa2-adc6-3f88effa9d83 4aca63b69b618b6e8a2098d8fe548b47 {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.WGS.A.hg38 C3N-01761 UCEC WGS tissue_normal CPT0116730006 c84d7702-d800-4bfa-a134-0d1bb8ea223f_wgs_gdc_realn.bam 90757289222 BAM harmonized CPTAC3 9ad0a850-d443-4b27-9b44-882e6546806a 89579eb07a9f8b9d07716db63429649e {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.WGS.N C3N-01761 UCEC WGS blood_normal CPT0116770002 CPT0116770002.WholeGenome.RP-1303.bam 56363089556 BAM submitted_aligned CPTAC3 d62aba1e-954c-46eb-bced-787133740abb 61eb5a1bbf9015adfcbb561a83760b14 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01761.WGS.N.hg38 C3N-01761 UCEC WGS blood_normal CPT0116770002 e3066c41-c8ee-4a65-8c89-f61803df8cf7_wgs_gdc_realn.bam 80584615516 BAM harmonized CPTAC3 323b94f5-866f-473c-862a-58c5ffbf4431 bfe43fff0a41a9025f6d64c9fde3d467 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01761.WGS.T C3N-01761 UCEC WGS tumor CPT0116710006 CPT0116710006.WholeGenome.RP-1303.bam 60593597286 BAM submitted_aligned CPTAC3 79ffd0ad-698e-4bdd-8d73-e37c81895310 e2a26237531e4c0edf0912bf86c19f4e {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.WGS.T.hg38 C3N-01761 UCEC WGS tumor CPT0116710006 bde7fa77-8666-4c4d-8360-ba619e4764f0_wgs_gdc_realn.bam 87889780308 BAM harmonized CPTAC3 5070dd1c-6214-4114-988d-9baeb4ff6614 0b24c2a0862087b765fe1a78484415eb {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.WXS.A C3N-01761 UCEC WXS tissue_normal CPT0116730006 CPT0116730006.WholeExome.RP-1303.bam 23759610458 BAM submitted_aligned CPTAC3 d721e318-17d0-466b-b28b-5fdf2b0f14f9 82979d0b62ad91e773844c9b057f99b6 {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.WXS.A.hg38 C3N-01761 UCEC WXS tissue_normal CPT0116730006 c84d7702-d800-4bfa-a134-0d1bb8ea223f_wxs_gdc_realn.bam 32138016739 BAM harmonized CPTAC3 ce067e34-2d2e-4378-8043-5a4c604a37bc da9cd7f98261a078cb2950eda0fecf0c {"aliquot_tag": "ALQ_13009177", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01761.WXS.N C3N-01761 UCEC WXS blood_normal CPT0116770002 CPT0116770002.WholeExome.RP-1303.bam 18397478007 BAM submitted_aligned CPTAC3 fe89fb8d-9d81-4afb-8bc7-ba3e8bda15d5 b4c3128706b82c99518e04c805b333b5 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01761.WXS.N.hg38 C3N-01761 UCEC WXS blood_normal CPT0116770002 e3066c41-c8ee-4a65-8c89-f61803df8cf7_wxs_gdc_realn.bam 25271970628 BAM harmonized CPTAC3 5639cd90-8e00-4c68-b71d-8baee288a727 8a3a7fe234545a901f679e8f6240c3d3 {"aliquot_tag": "ALQ_e1edf3ae", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01761.WXS.T C3N-01761 UCEC WXS tumor CPT0116710006 CPT0116710006.WholeExome.RP-1303.bam 23847559113 BAM submitted_aligned CPTAC3 40dfbc0c-3439-463e-803a-cc8adac46576 462b23c3d560067a78f40471b1e17c75 {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01761.WXS.T.hg38 C3N-01761 UCEC WXS tumor CPT0116710006 bde7fa77-8666-4c4d-8360-ba619e4764f0_wxs_gdc_realn.bam 32270906859 BAM harmonized CPTAC3 656835ab-7a9e-4cd9-a040-2a8b18e60d4b 7b87c4affc44b64723891f5cc6f0538a {"aliquot_tag": "ALQ_69c0c217", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.MethArray.Green.T C3N-01763 UCEC Methylation_Array tumor CPT0116860006 203220070171_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f6437617-fb68-4311-8f7a-21fb919fd528 735e1bd148dc3d7bc803c0dd365f514d {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.MethArray.Red.T C3N-01763 UCEC Methylation_Array tumor CPT0116860006 203220070171_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 4acf73af-ff37-41b2-a110-a5dcb52d74eb 280907df8383b7ecf15cb802adf96723 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.miRNA-Seq.S39_L002_R1.T C3N-01763 UCEC miRNA-Seq tumor CPT0116850047 190508_UNC31-K00269_0215_BH7FYKBBXY_CTATAC_S39_L002_R1_001.unaln.bam 256135344 BAM S39_L002_R1 submitted_unaligned CPTAC3 64239bd4-2013-4351-98a9-29ad64ebe266 cf3b487e56b53d75c77b738b8197b9b8 {"aliquot_tag": "ALQ_7e7d2390", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.miRNA-Seq.S47_L003_R1.T C3N-01763 UCEC miRNA-Seq tumor CPT0116860009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGAAG_S47_L003_R1_001.unaln.bam 210384316 BAM S47_L003_R1 submitted_unaligned CPTAC3 cef09340-c858-406c-b0b0-f1c1a98676ee 36cb75ad03132528daa24c6a73993f15 {"aliquot_tag": "ALQ_ba09b143", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.miRNA-Seq.T.hg38 C3N-01763 UCEC miRNA-Seq tumor CPT0116850047 6ae435b8-6206-45a6-8202-5da4a085d070_mirnaseq_gdc_realn.bam 293857045 BAM harmonized CPTAC3 ee8a6ac9-24e0-420b-919b-9d7da7d44efe e49f8e05f799a51e8ae8000bdc957f12 {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.miRNA-Seq.T.hg38 C3N-01763 UCEC miRNA-Seq tumor CPT0116860009 e62b0035-272a-4ee1-b2c4-a0197f04e058_mirnaseq_gdc_realn.bam 234584599 BAM harmonized CPTAC3 6f013723-651d-429c-af97-fa40ec1039d7 1b76b951b2c9f998f219d9da512b260e {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.chimeric.gdc_realn.bam 40971318 BAM chimeric harmonized CPTAC3 9a35a226-f3d1-430f-91e8-589efad3292c 6ca86ae377eab9bd88cd93a25acefb27 {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.chimeric.gdc_realn.bam 25286691 BAM chimeric harmonized CPTAC3 a85f8fe4-bd19-48a3-8267-50cce3d744b1 aae6b6fb1dc5c2e4e78d32a2e7e59de0 {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.genomic.gdc_realn.bam 8586502346 BAM genomic harmonized CPTAC3 cf8c1439-4329-434b-b9ff-a79411dce763 2b4e0c8f4c8098df1c46c26c78cab98a {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.genomic.gdc_realn.bam 7429096308 BAM genomic harmonized CPTAC3 75f628a0-5b88-4e21-95f4-6002860b8d0a 02c5edc3a59410a767e941ebd976b270 {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.S23_L006_R1.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 4167536358 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 cc569ee8-69b0-458c-95b1-b339524714ef a6db3880f3b8b398e1155341097f8ac5 {"aliquot_tag": "ALQ_7e7d2390", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.S23_L006_R2.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4639896452 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 d9683cdb-83d8-483a-b5a1-281e8894afe3 12befb0d38cfebf27fd8fe24a1e63052 {"aliquot_tag": "ALQ_7e7d2390", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.S25_L007_R1.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R1_001.fastq.gz 3572864062 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 0ec582f3-4c3e-4cd5-af45-8a041b11e71a f0d0d0f5d0cf34dbde05dd85fdd6a5a6 {"aliquot_tag": "ALQ_ba09b143", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.S25_L007_R2.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R2_001.fastq.gz 3710719905 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 adbc8553-ce20-401b-be51-9808d7604857 ce760afe71e5fd0db7d478ab3997a489 {"aliquot_tag": "ALQ_ba09b143", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.transcriptome.gdc_realn.bam 13224328053 BAM transcriptome harmonized CPTAC3 c5220c56-9fb2-4b91-a1b6-db485800a51c f7c9f62044100a7dc17fc2f3f7cbdd25 {"aliquot_tag": "ALQ_7e7d2390", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.transcriptome.gdc_realn.bam 10619418595 BAM transcriptome harmonized CPTAC3 56a2059e-5322-4206-9448-24da47ef9e88 9053d769790a0b2cee0d28a4971768a3 {"aliquot_tag": "ALQ_ba09b143", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.WGS.N C3N-01763 UCEC WGS blood_normal CPT0116930002 CPT0116930002.WholeGenome.RP-1303.bam 63529229182 BAM submitted_aligned CPTAC3 fac5d673-2c84-4a3f-92c3-4389e9fcc042 9055fdc7f62499dd30cf6fe39ba4d296 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01763.WGS.N.hg38 C3N-01763 UCEC WGS blood_normal CPT0116930002 a636d8ce-b0db-4f41-8127-626e3651f2ab_wgs_gdc_realn.bam 93453621013 BAM harmonized CPTAC3 ab009282-d788-4df8-9660-a2ef8a077f36 3caf659efd7e62baa8e3d44b95098924 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01763.WGS.T C3N-01763 UCEC WGS tumor CPT0116860006 CPT0116860006.WholeGenome.RP-1303.bam 62758190402 BAM submitted_aligned CPTAC3 46e5bbe8-c4ef-4b48-846e-ef1d75a1736f fcca37b8610bf4173666858ee2b86922 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.WGS.T.hg38 C3N-01763 UCEC WGS tumor CPT0116860006 4e9cf599-cad0-4b16-938f-a2832fa00c41_wgs_gdc_realn.bam 92812729556 BAM harmonized CPTAC3 320489fe-1ee7-4362-b061-74fd60b73c04 2a5ab5f036c8a1cbd9a319e0e9b79989 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.WXS.N C3N-01763 UCEC WXS blood_normal CPT0116930002 CPT0116930002.WholeExome.RP-1303.bam 18891845507 BAM submitted_aligned CPTAC3 f6d53e01-b50b-4361-a4eb-c9c4153dbcba e83ee91cd31e0238d00197fd99c29c80 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01763.WXS.N.hg38 C3N-01763 UCEC WXS blood_normal CPT0116930002 a636d8ce-b0db-4f41-8127-626e3651f2ab_wxs_gdc_realn.bam 27018820463 BAM harmonized CPTAC3 b5793cec-155c-4fda-836c-b0caa9e6cfac 00d28f83f2217f9f31ea23ace9617d95 {"aliquot_tag": "ALQ_2e67341e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01763.WXS.T C3N-01763 UCEC WXS tumor CPT0116860006 CPT0116860006.WholeExome.RP-1303.bam 30370610097 BAM submitted_aligned CPTAC3 fc01fa66-fe7b-4d5e-ba6d-eeaa55e166e2 06e1de96ff969d7b9df9e71ffda30fd1 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01763.WXS.T.hg38 C3N-01763 UCEC WXS tumor CPT0116860006 4e9cf599-cad0-4b16-938f-a2832fa00c41_wxs_gdc_realn.bam 41744221056 BAM harmonized CPTAC3 b38c08be-3b1b-49c7-9782-2eae3fefd3c7 15e2fb3f9e5efd7cbcd3c3eec95e7392 {"aliquot_tag": "ALQ_2ab6acd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.MethArray.Green.T C3N-01764 UCEC Methylation_Array tumor CPT0181320006 203561450006_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 97f67ed4-d67d-41fa-83e5-6c42f761bcbb 734dc7f7662d8adee62ddabc170a2bb5 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.MethArray.Red.T C3N-01764 UCEC Methylation_Array tumor CPT0181320006 203561450006_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 bb387e09-332e-4e39-bec4-6fc72756a388 833ee7a43f5f407f060d3808114046f6 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.miRNA-Seq.S37_L002_R1.T C3N-01764 UCEC miRNA-Seq tumor CPT0181320009 190813_UNC32-K00270_0196_AH5MCWBBXY_ACTTGA_S37_L002_R1_001.unaln.bam 194689135 BAM S37_L002_R1 submitted_unaligned CPTAC3 49124834-1a06-417c-b706-0a6f7b7b13db 1eec9e62d70fc01dc3c469d1e843a24f {"aliquot_tag": "ALQ_ffa6c2e5", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.miRNA-Seq.T.hg38 C3N-01764 UCEC miRNA-Seq tumor CPT0181320009 6fec6a9c-4b7e-48e5-8ea3-c592d6d876ce_mirnaseq_gdc_realn.bam 220766183 BAM harmonized CPTAC3 6796c265-1c2f-45c2-92b4-123225e76709 36d37153b7b070c51a6b21676f987a91 {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.chimeric.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.chimeric.gdc_realn.bam 36736805 BAM chimeric harmonized CPTAC3 80ce3c1b-441d-4a5e-84a5-193d476c3a56 d5f4841b6d10a475ae5c98dae646f2d8 {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.chimeric.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.chimeric.gdc_realn.bam 145889099 BAM chimeric harmonized CPTAC3 e6af529e-908e-453e-ae4e-5a26d30b5984 38fdc5950df869fc32f8689e366bd804 {"aliquot_tag": "ALQ_e1c340f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.genomic.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.genomic.gdc_realn.bam 8374030254 BAM genomic harmonized CPTAC3 08807c5f-f25c-4ae9-97d9-d567649b8a3e 72bd10eb4adebbe1f2ecf7761379c10d {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.genomic.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.genomic.gdc_realn.bam 6608679097 BAM genomic harmonized CPTAC3 26492594-d827-4768-adb4-7bb8ffaa0610 1e3a8f39a01e8d5dcf47ca7b2f847cd5 {"aliquot_tag": "ALQ_e1c340f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.S2_L001_R1.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R1_001.fastq.gz 4121287607 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 15fe01a9-90bd-4b66-932a-1a21f1b3becf 18eac54ff0f023df94e6eb55fec54c22 {"aliquot_tag": "ALQ_ffa6c2e5", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.S2_L001_R2.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R2_001.fastq.gz 4300105222 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 ab5775a0-83ef-4633-9e63-137cb9a40533 14750d22e4ea88d4d82f7d804dd77b70 {"aliquot_tag": "ALQ_ffa6c2e5", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.S73_R1.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R1_001.fastq.gz 4474524968 FASTQ S73_R1 submitted_unaligned CPTAC3 086b8c68-a3c9-4af5-ac76-2b7ba7995bcc e0d77f690e5c1d25ec3feb665ece314f {"aliquot_tag": "ALQ_e1c340f3", "sample": "S73", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.S73_R2.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R2_001.fastq.gz 4633509902 FASTQ S73_R2 submitted_unaligned CPTAC3 c840f84d-dd0c-4ec0-b5fe-5706c6452139 843ad5f34819b5b73478bedd32d5457d {"aliquot_tag": "ALQ_e1c340f3", "sample": "S73", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.transcriptome.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.transcriptome.gdc_realn.bam 10133659235 BAM transcriptome harmonized CPTAC3 a9bf92b2-2d60-4cb0-b8c3-cb5333fba839 d4628a1443ad0a6c5a931b1e0180e963 {"aliquot_tag": "ALQ_ffa6c2e5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.RNA-Seq.transcriptome.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.transcriptome.gdc_realn.bam 3292340840 BAM transcriptome harmonized CPTAC3 d15d2caf-aead-49e8-aa63-63389a871dd5 a2839877836de9f5a151740a670a8bdc {"aliquot_tag": "ALQ_e1c340f3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.WGS.N C3N-01764 UCEC WGS blood_normal CPT0181420002 CPT0181420002.WholeGenome.RP-1303.bam 76306043227 BAM submitted_aligned CPTAC3 f1aafd55-375c-4e1a-bbf5-1764a83d5160 8438106dea706da81a56d1aa5c083e46 {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01764.WGS.N.hg38 C3N-01764 UCEC WGS blood_normal CPT0181420002 8e1413b9-4510-41ba-aebc-7acdf3bc86f0_wgs_gdc_realn.bam 110211404774 BAM harmonized CPTAC3 f722819c-c714-400c-a6da-b7e25e52f829 87844d3bfa92705f305c7c50047dfd02 {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01764.WGS.T C3N-01764 UCEC WGS tumor CPT0181320006 CPT0181320006.WholeGenome.RP-1303.bam 75986964008 BAM submitted_aligned CPTAC3 f6bf80a8-7c87-4dfd-b7a0-f13c6c415ded 8f27ccdd073ca134997eb9dcd7fdc7fc {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.WGS.T.hg38 C3N-01764 UCEC WGS tumor CPT0181320006 5dd78a88-3160-492f-916d-85ea449c9db5_wgs_gdc_realn.bam 108299266087 BAM harmonized CPTAC3 1694cf41-5a57-4dcc-886c-40bfeef65616 949a85587a0c14d7717c99b3a83af9c9 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.WXS.N C3N-01764 UCEC WXS blood_normal CPT0181420002 CPT0181420002.WholeExome.RP-1303.bam 28455413230 BAM submitted_aligned CPTAC3 27c396c4-1cf7-4b34-a4a5-feb81478fb97 f69e718d07e2c34cd2a2a597a1a48f7a {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01764.WXS.N.hg38 C3N-01764 UCEC WXS blood_normal CPT0181420002 8e1413b9-4510-41ba-aebc-7acdf3bc86f0_wxs_gdc_realn.bam 38845229497 BAM harmonized CPTAC3 f3b81a82-cf37-45ea-9d2d-1332640160cf c395095129390a8e231d209cdd84ad96 {"aliquot_tag": "ALQ_75712bd5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01764.WXS.T C3N-01764 UCEC WXS tumor CPT0181320006 CPT0181320006.WholeExome.RP-1303.bam 27437650198 BAM submitted_aligned CPTAC3 e7d2782d-96fa-45ad-95fa-7e0b65f7d30a 264e153c40ed2f7c61d38e12a89c2022 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01764.WXS.T.hg38 C3N-01764 UCEC WXS tumor CPT0181320006 5dd78a88-3160-492f-916d-85ea449c9db5_wxs_gdc_realn.bam 37407215847 BAM harmonized CPTAC3 e44a3fea-f265-4043-a7bb-dd851889f503 28edb361bc7a65c7281c6d1038f914c8 {"aliquot_tag": "ALQ_6f19df74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.MethArray.Green.T C3N-01765 UCEC Methylation_Array tumor CPT0116940006 203220070156_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 cbe0a7a7-979b-4e31-9018-ab1d47a295f1 faf1b5119bd5b3eb714c1b98e182e4ff {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.MethArray.Red.T C3N-01765 UCEC Methylation_Array tumor CPT0116940006 203220070156_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 4a8a0b93-ebec-4894-95a5-61720377f243 7f3116f64ba70529ace9632d39022e15 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.miRNA-Seq.A.hg38 C3N-01765 UCEC miRNA-Seq tissue_normal CPT0116960009 365b23f0-c713-4e20-8a80-8af6ee4a4601_mirnaseq_gdc_realn.bam 317472192 BAM harmonized CPTAC3 be06190b-13da-40b3-b932-ab379fab6401 5cf8964340371303f5675f63eaf5ff4c {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.miRNA-Seq.S46_L003_R1.A C3N-01765 UCEC miRNA-Seq tissue_normal CPT0116960009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L003_R1_001.unaln.bam 281375848 BAM S46_L003_R1 submitted_unaligned CPTAC3 f2906fae-7f16-4cb2-86b8-8b0292f3831a c8b8e722c7d81b41aed4d9d41d754040 {"aliquot_tag": "ALQ_715562e6", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.miRNA-Seq.S48_L003_R1.T C3N-01765 UCEC miRNA-Seq tumor CPT0116940009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGGCA_S48_L003_R1_001.unaln.bam 211345881 BAM S48_L003_R1 submitted_unaligned CPTAC3 cf99070a-2020-4fb1-ae9e-c729767b4b48 d07dedbe6bf8c7ca82b235f0d8473e1e {"aliquot_tag": "ALQ_b953186", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.miRNA-Seq.T.hg38 C3N-01765 UCEC miRNA-Seq tumor CPT0116940009 78a371fe-3d52-463f-a356-0f974afe9ae4_mirnaseq_gdc_realn.bam 236212983 BAM harmonized CPTAC3 01b09e5e-4ecc-4761-8c14-19523608d436 361ea16504564d8c95af87e1d9ff93f0 {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.chimeric.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.chimeric.gdc_realn.bam 35980714 BAM chimeric harmonized CPTAC3 6bfa08c9-cffe-48ac-b00b-1aebbe85a8a5 f43c31f5a7c91a4351369012950eae4e {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.RNA-Seq.chimeric.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.chimeric.gdc_realn.bam 26425887 BAM chimeric harmonized CPTAC3 5fe81484-3b91-4484-8852-2f68aedd4df6 fad0e468df620faef75d7d5b8c035f5b {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.chimeric.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.chimeric.gdc_realn.bam 141564140 BAM chimeric harmonized CPTAC3 5c5cebdb-d230-4e48-bcc0-51ef3e944f97 80da45658d9c28c132370b90281e3c64 {"aliquot_tag": "ALQ_98bf4f46", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.genomic.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.genomic.gdc_realn.bam 9473449150 BAM genomic harmonized CPTAC3 1caf09e8-c8fd-4918-b5c4-6513d2e0b356 11af2eadefa20d72e2d31d10ea6a693e {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.RNA-Seq.genomic.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.genomic.gdc_realn.bam 7748532240 BAM genomic harmonized CPTAC3 37a56f26-2034-4a05-9d5f-b921ce6660e9 1b4b91746162ed530c1637083eeb05f3 {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.genomic.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.genomic.gdc_realn.bam 7633547983 BAM genomic harmonized CPTAC3 59e97014-3355-443b-8989-d1f05b1ad6d7 d74df7b676b638921842c70f4e2a9783 {"aliquot_tag": "ALQ_98bf4f46", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.S20_L007_R1.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R1_001.fastq.gz 3478808141 FASTQ S20_L007_R1 submitted_unaligned CPTAC3 bb95410d-8d96-4e89-87f0-3b99e2df0819 356c8716f387271450d1f30ad14e62e5 {"aliquot_tag": "ALQ_b953186", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.S20_L007_R2.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R2_001.fastq.gz 3634000136 FASTQ S20_L007_R2 submitted_unaligned CPTAC3 09364581-4838-4c36-82b6-22479bab4426 8f992be3debb07eff5519ff20cdc4879 {"aliquot_tag": "ALQ_b953186", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.S2_L001_R1.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 3617796962 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 8b854d30-5075-414f-b02f-8d68ede6807d 28d0f0f54875d0367f6bfcaf97dee662 {"aliquot_tag": "ALQ_715562e6", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.RNA-Seq.S2_L001_R2.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4064303340 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 09e26c8f-83b4-4d54-95ed-e7d58df8fc7b aed81ac4969395e352aa00ff72c47549 {"aliquot_tag": "ALQ_715562e6", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.RNA-Seq.S39_R1.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R1_001.fastq.gz 4691831153 FASTQ S39_R1 submitted_unaligned CPTAC3 b5bc81e8-c6f7-48f6-9569-89cd460e5c2f c2955f19be845b76449f9ba44b4cc426 {"aliquot_tag": "ALQ_98bf4f46", "sample": "S39", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.S39_R2.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R2_001.fastq.gz 4782780001 FASTQ S39_R2 submitted_unaligned CPTAC3 f6e5bd59-83f4-4893-954b-74a02ddafc3b 53fbbafc379615f42222115c0bc2ef6d {"aliquot_tag": "ALQ_98bf4f46", "sample": "S39", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.transcriptome.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.transcriptome.gdc_realn.bam 10433711967 BAM transcriptome harmonized CPTAC3 67f6cd4f-0703-43be-b78d-62abae4a5f6c 0da38e27262154d744464936a7f284a8 {"aliquot_tag": "ALQ_715562e6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.RNA-Seq.transcriptome.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.transcriptome.gdc_realn.bam 8924546081 BAM transcriptome harmonized CPTAC3 feca2ba7-371c-41a0-9a2e-bf34b52c9298 fd1e9048ad033c95592fd2bd596fdad1 {"aliquot_tag": "ALQ_b953186", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.RNA-Seq.transcriptome.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.transcriptome.gdc_realn.bam 3592066261 BAM transcriptome harmonized CPTAC3 2acd8501-e18a-454d-9170-977f28b22809 08e4685c2738e73de88ad6418055ae22 {"aliquot_tag": "ALQ_98bf4f46", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.WGS.A C3N-01765 UCEC WGS tissue_normal CPT0116960006 CPT0116960006.WholeGenome.RP-1303.bam 60046690954 BAM submitted_aligned CPTAC3 4ff01569-6fd4-4aec-aa5c-4323a5b0dca8 ff85d25a92885be0514f2cbb0e8dbf1f {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.WGS.A.hg38 C3N-01765 UCEC WGS tissue_normal CPT0116960006 111a9ccd-261a-45b3-a0de-e7fb02aba7ad_wgs_gdc_realn.bam 89064072917 BAM harmonized CPTAC3 3d1c9bd4-190c-403e-9feb-64c1d9180224 d6194b448884dad3349c49216203aef8 {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.WGS.N C3N-01765 UCEC WGS blood_normal CPT0117000002 CPT0117000002.WholeGenome.RP-1303.bam 62631238284 BAM submitted_aligned CPTAC3 5e839f72-556e-44e3-b3c2-2cafde73fa32 bd457f2578be2dee2c936e72bf563718 {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01765.WGS.N.hg38 C3N-01765 UCEC WGS blood_normal CPT0117000002 ef732795-049e-4592-85cc-6d52b527fdd9_wgs_gdc_realn.bam 91671507303 BAM harmonized CPTAC3 e318ae36-246e-4200-a3bc-f0e922c937aa 3133787c8461497f0572f99bc30f0f9a {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01765.WGS.T C3N-01765 UCEC WGS tumor CPT0116940006 CPT0116940006.WholeGenome.RP-1303.bam 62505332363 BAM submitted_aligned CPTAC3 ec1147bc-b6c0-48ee-93d3-4dd690677e2b 3b7f574dbb51fd91a93541d468ed9d46 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.WGS.T.hg38 C3N-01765 UCEC WGS tumor CPT0116940006 55ba8dc9-e635-49e8-a195-e7246b7413ae_wgs_gdc_realn.bam 91290849907 BAM harmonized CPTAC3 bf246ae9-a2c4-4ecb-9862-4fae89a9e0a6 842cb6a64796bbc573da4e3b5cedfb33 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.WXS.A C3N-01765 UCEC WXS tissue_normal CPT0116960006 CPT0116960006.WholeExome.RP-1303.bam 18971991126 BAM submitted_aligned CPTAC3 b57413b7-fdb7-4a93-bee3-7096beb44d9d 05e88c5ddaf77aedc1165ed3d735f8b3 {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.WXS.A.hg38 C3N-01765 UCEC WXS tissue_normal CPT0116960006 111a9ccd-261a-45b3-a0de-e7fb02aba7ad_wxs_gdc_realn.bam 26193497562 BAM harmonized CPTAC3 65d8343c-b2fb-4e9d-81ba-87278768204a a9e6bfe31c7cfc93c9be5b08ff6eb485 {"aliquot_tag": "ALQ_e1ea7f77", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01765.WXS.N C3N-01765 UCEC WXS blood_normal CPT0117000002 CPT0117000002.WholeExome.RP-1303.bam 26064247181 BAM submitted_aligned CPTAC3 0037cbbb-5afa-4ef0-ad2c-234fcd9198a8 85f9eebb2725c8033b15a67eb2ea91a5 {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01765.WXS.N.hg38 C3N-01765 UCEC WXS blood_normal CPT0117000002 ef732795-049e-4592-85cc-6d52b527fdd9_wxs_gdc_realn.bam 36154587097 BAM harmonized CPTAC3 9b23229f-1bc9-45fb-8ac6-6af6d0d3fb4e 7d642f31ac56207a70282b50af4641c2 {"aliquot_tag": "ALQ_e8bf14b2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01765.WXS.T C3N-01765 UCEC WXS tumor CPT0116940006 CPT0116940006.WholeExome.RP-1303.bam 20066048737 BAM submitted_aligned CPTAC3 60cd1fd1-dd98-417a-9a15-7f6294bdb19d 4a641d2d60d5efc2219ba13d90a61359 {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01765.WXS.T.hg38 C3N-01765 UCEC WXS tumor CPT0116940006 55ba8dc9-e635-49e8-a195-e7246b7413ae_wxs_gdc_realn.bam 27918415923 BAM harmonized CPTAC3 7b85efdf-f131-454c-a472-e29529c11149 9d93f8a4da0c795da613180f4524ff0f {"aliquot_tag": "ALQ_9b2a2c17", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.MethArray.Green.T C3N-01766 UCEC Methylation_Array tumor CPT0226810006 203561620077_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 4e24246e-b168-45c3-8491-8742c3318a20 d202b187709784766dfd61163eb88876 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.MethArray.Red.T C3N-01766 UCEC Methylation_Array tumor CPT0226810006 203561620077_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 362dbf69-f909-44f5-8935-c5039744a0fb 7b3eba689d31a35d22d4ccc2c88731a3 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.miRNA-Seq.S33_L004_R1.T C3N-01766 UCEC miRNA-Seq tumor CPT0226810009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGGCG_S33_L004_R1_001.unaln.bam 237325732 BAM S33_L004_R1 submitted_unaligned CPTAC3 ae33088d-1e83-493e-b0f7-9ee8cb64a2db 0da529b04085d5d5f4281dd567a48c65 {"aliquot_tag": "ALQ_bf2b5675", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.miRNA-Seq.T.hg38 C3N-01766 UCEC miRNA-Seq tumor CPT0226810009 5b88a80c-5744-4eb4-bdfb-9a6b995e8bd7_mirnaseq_gdc_realn.bam 273896866 BAM harmonized CPTAC3 f33717b8-b9f7-47ca-ae53-5d19026f6cbb d3e4e140d83b9152eacc57e31936c1a7 {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.chimeric.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.chimeric.gdc_realn.bam 43968453 BAM chimeric harmonized CPTAC3 0417e391-932d-47fc-91fe-11b382ec56cc 86a32c47caad72ba789debc8bd2349ba {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.chimeric.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.chimeric.gdc_realn.bam 196626309 BAM chimeric harmonized CPTAC3 1af0c05d-d104-4a37-a89a-d2547a9e5b15 e5eba0e641bfa20280dab1b1ec4aa482 {"aliquot_tag": "ALQ_505fc036", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.genomic.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.genomic.gdc_realn.bam 9324855723 BAM genomic harmonized CPTAC3 2caedd36-ba6d-4445-9085-5d668e2d3ef6 8447721e5d936b4f56c0161a58cb2b7f {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.genomic.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.genomic.gdc_realn.bam 8598218707 BAM genomic harmonized CPTAC3 bd3c6ffc-35ee-42a4-b15a-53e75b8a969b 8eae8f401b11363d8187699282d2cc6b {"aliquot_tag": "ALQ_505fc036", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.S18_R1.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R1_001.fastq.gz 4762228461 FASTQ S18_R1 submitted_unaligned CPTAC3 9a32df43-fd9d-4be5-a69a-4f959fd990d0 53c5e766ba86e64556263a22210cea61 {"aliquot_tag": "ALQ_505fc036", "sample": "S18", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.S18_R2.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R2_001.fastq.gz 4920715927 FASTQ S18_R2 submitted_unaligned CPTAC3 e7e74d9a-b9a8-4753-84e1-f2bd2e3a0de7 8e15a18c69e004de4c36768573b2a4e9 {"aliquot_tag": "ALQ_505fc036", "sample": "S18", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.S5_L002_R1.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R1_001.fastq.gz 4432717655 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 96ea3cfc-9e24-4903-8b33-6691b9ec934d 78af198e3b5de5ad51053b9c672ddd91 {"aliquot_tag": "ALQ_bf2b5675", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.S5_L002_R2.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R2_001.fastq.gz 5034965860 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 d73c774d-aeb6-4a5f-a630-b3e85afa4ea0 0e40c2daeea4f559288819fd25809e34 {"aliquot_tag": "ALQ_bf2b5675", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.transcriptome.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.transcriptome.gdc_realn.bam 13325853441 BAM transcriptome harmonized CPTAC3 707adb18-7519-48cf-baec-945a6768213d 18b47a2d3631b32070dee097aed5d68b {"aliquot_tag": "ALQ_bf2b5675", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.RNA-Seq.transcriptome.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.transcriptome.gdc_realn.bam 3576817985 BAM transcriptome harmonized CPTAC3 2f6f34c4-93dc-4475-9d12-9a9650042ec4 fba52e75b213a8bf29b0fba61185528e {"aliquot_tag": "ALQ_505fc036", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.WGS.N C3N-01766 UCEC WGS blood_normal CPT0226850002 CPT0226850002.WholeGenome.RP-1303.bam 82934955171 BAM submitted_aligned CPTAC3 394ea969-87e2-491d-9dce-5d4c9c8f71d3 e7420d84b3a9f06c5bff0e7ff1958477 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01766.WGS.N.hg38 C3N-01766 UCEC WGS blood_normal CPT0226850002 6f28b44a-bb64-4651-947b-2e7eafd00ab3_wgs_gdc_realn.bam 121613866429 BAM harmonized CPTAC3 c5b9f037-f471-4978-8eff-814cc98f3ea1 416b91f8caf0d3d836b3a7219ae68125 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01766.WGS.T C3N-01766 UCEC WGS tumor CPT0226810006 CPT0226810006.WholeGenome.RP-1303.bam 77469750236 BAM submitted_aligned CPTAC3 b7838dbc-ed59-4c80-9b80-4e0207ec9e05 82438ce98b49833316d7701f1eae9ddc {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.WGS.T.hg38 C3N-01766 UCEC WGS tumor CPT0226810006 4f4f3cf5-ffc3-41e2-ab9a-3984f073b5f7_wgs_gdc_realn.bam 114104646184 BAM harmonized CPTAC3 2ab9be3a-77fb-4059-a8cc-713ae881d4f2 0a4d751bf1aa59211352409cc84874cc {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.WXS.N C3N-01766 UCEC WXS blood_normal CPT0226850002 CPT0226850002.WholeExome.RP-1303.bam 24505971695 BAM submitted_aligned CPTAC3 b35cf0fe-dfee-4e63-bdeb-70d34287df4f 31ff5a2a8cd71f70d7c7108830a96b95 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01766.WXS.N.hg38 C3N-01766 UCEC WXS blood_normal CPT0226850002 6f28b44a-bb64-4651-947b-2e7eafd00ab3_wxs_gdc_realn.bam 33456942947 BAM harmonized CPTAC3 88dd8f1d-7a97-4b47-98d6-b0a0b53380f5 abe1f16ee9d57aab9327f3bced3eb799 {"aliquot_tag": "ALQ_dd79293d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01766.WXS.T C3N-01766 UCEC WXS tumor CPT0226810006 CPT0226810006.WholeExome.RP-1303.bam 21738243963 BAM submitted_aligned CPTAC3 1c2fb60c-d18e-41ef-aaec-ca640f8ca730 efbfd63ff1259e72674d8e0bd56bc726 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01766.WXS.T.hg38 C3N-01766 UCEC WXS tumor CPT0226810006 4f4f3cf5-ffc3-41e2-ab9a-3984f073b5f7_wxs_gdc_realn.bam 30761691966 BAM harmonized CPTAC3 ae0dcf17-addf-47a6-a2d8-2a9650771226 eb71facc97ffcce7456463c7c8096347 {"aliquot_tag": "ALQ_2f944be4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.MethArray.Green.A C3N-01767 LSCC Methylation_Array tissue_normal CPT0321470006 204367490056_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 08cc00ad-399e-4b3f-8cdb-9d28b233cb49 f24187d4dbfbb271031ffeefc090711c {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.MethArray.Green.T C3N-01767 LSCC Methylation_Array tumor CPT0321460006 204372030024_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 24e130f4-f60e-4316-9ac2-90c427d67323 a707c25eebaadbc65c8bd9a1e3cb5d72 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.MethArray.Red.A C3N-01767 LSCC Methylation_Array tissue_normal CPT0321470006 204367490056_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 a7b354f0-b0a4-4bf5-8416-d1804190cc19 3be372212ce3bb51dbe6abccd75de102 {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.MethArray.Red.T C3N-01767 LSCC Methylation_Array tumor CPT0321460006 204372030024_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 b086203f-5e95-4bda-be3b-dcbd4acdac52 54511cba8eec87acaf35a0c1492b0cac {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.miRNA-Seq.A.hg38 C3N-01767 LSCC miRNA-Seq tissue_normal CPT0321470009 e360e895-68bd-4ef5-9780-3b07527fc228_mirnaseq_gdc_realn.bam 313238192 BAM harmonized CPTAC3 a753b8ab-c463-41b2-a0fa-3a8a7123294c 1ab9aca17f50929d4978c04adb24fc05 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.miRNA-Seq.S25_L006_R1.A C3N-01767 LSCC miRNA-Seq tissue_normal CPT0321470009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACTGAT_S25_L006_R1_001.unaln.bam 278939064 BAM S25_L006_R1 submitted_unaligned CPTAC3 ec2b8d1c-1290-42fa-a133-f786a034f01e c0f3c68bdf67553490b2364cc25b5f63 {"aliquot_tag": "ALQ_95754963", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.miRNA-Seq.S39_L007_R1.T C3N-01767 LSCC miRNA-Seq tumor CPT0321460009 200224_UNC31-K00269_0267_AHC722BBXY_CTATAC_S39_L007_R1_001.unaln.bam 258536181 BAM S39_L007_R1 submitted_unaligned CPTAC3 43f32783-e121-4131-8b10-f820dc9fd5c0 ab757d90de6f2a8416c26fa518a1a7f2 {"aliquot_tag": "ALQ_a81560d3", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.miRNA-Seq.T.hg38 C3N-01767 LSCC miRNA-Seq tumor CPT0321460009 f0af4d65-0e5f-4c86-a4e3-c4c5c44c421a_mirnaseq_gdc_realn.bam 284784513 BAM harmonized CPTAC3 ecd1b0b5-cc41-48d6-9c10-f23561dd527e 4e55bcf89f2fd8c9fc5394589c11c782 {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.RNA-Seq.chimeric.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.chimeric.gdc_realn.bam 33925985 BAM chimeric harmonized CPTAC3 fa79127d-7b38-462c-a094-ea8ab273ad1b 438d0aecdb9959a71d0de14202c33279 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.RNA-Seq.chimeric.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.chimeric.gdc_realn.bam 31511557 BAM chimeric harmonized CPTAC3 4ec44176-b2b8-4ddf-a863-34046bde3e48 24b7d96de2ff49207920b176c34faa40 {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.RNA-Seq.genomic.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.genomic.gdc_realn.bam 8916162768 BAM genomic harmonized CPTAC3 13313071-c774-44c1-851c-4f05df948601 a275bc5537828c60c795e81e90c01832 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.RNA-Seq.genomic.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.genomic.gdc_realn.bam 7070266928 BAM genomic harmonized CPTAC3 b70f7d5d-627f-4b91-a408-fa8a8a3d32ea 2ca5237e584f8cee999ccdcbe83f30cb {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.RNA-Seq.S7_L002_R1.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 3420470899 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 8e79de30-7b3c-4716-b4f2-7eca97352547 64abf5b9368846b4191203bb6617d998 {"aliquot_tag": "ALQ_a81560d3", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.RNA-Seq.S7_L002_R2.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3642460227 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 042d2e89-2d28-425c-ae7e-dd4dd80bddfb 0f084b9c0e332889b702561a41e8b899 {"aliquot_tag": "ALQ_a81560d3", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.RNA-Seq.S9_L003_R1.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4084108636 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 649a1980-a6d2-4dd1-b29b-9d8943d41ace a756295953018fad461666f270017c24 {"aliquot_tag": "ALQ_95754963", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.RNA-Seq.S9_L003_R2.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4909628844 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 866d1256-d6bb-4aa0-b5ea-16a2843410a7 65ebe2c7789838337e16ecb3d3fd7afb {"aliquot_tag": "ALQ_95754963", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.RNA-Seq.transcriptome.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.transcriptome.gdc_realn.bam 10431757555 BAM transcriptome harmonized CPTAC3 4bb9e270-1058-4034-8656-0b8232d9ac21 4e35c0cfc2f900581bedcfb2d32c4cf0 {"aliquot_tag": "ALQ_95754963", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.RNA-Seq.transcriptome.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.transcriptome.gdc_realn.bam 9277800609 BAM transcriptome harmonized CPTAC3 745b5169-edc5-40bf-b505-a048d4ac489a 0170212fb4e3c7c8767a1855079104d1 {"aliquot_tag": "ALQ_a81560d3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.WGS.N C3N-01767 LSCC WGS blood_normal CPT0321500002 CPT0321500002.WholeGenome.RP-2158.bam 24317652446 BAM submitted_aligned CPTAC3 f660ff25-e13c-48d7-acf0-cc6968325f7d 9766f0a94e538c39524668c7eee6ad32 {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01767.WGS.N.hg38 C3N-01767 LSCC WGS blood_normal CPT0321500002 d776e407-5302-45a0-8132-f5cb9827057b_wgs_gdc_realn.bam 72917295191 BAM harmonized CPTAC3 6014ac1c-0e43-4639-a4da-aa11ee71e8c7 4cef20d16ba33cbfa0120cfe3617969e {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01767.WGS.T C3N-01767 LSCC WGS tumor CPT0321460006 CPT0321460006.WholeGenome.RP-2158.bam 22854197072 BAM submitted_aligned CPTAC3 bc0adb67-11b6-4526-b5c8-64c0e05bf0e9 8137c2a0059101b87aeab5a737569d4e {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.WGS.T.hg38 C3N-01767 LSCC WGS tumor CPT0321460006 8f5b7ba8-7564-4f6d-96ce-a72930454080_wgs_gdc_realn.bam 68948306476 BAM harmonized CPTAC3 960c774f-e227-4cc5-a62f-3922d196bfa1 ec05f1cfbdbdec9df1d5908d94e2a4f9 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.WXS.A C3N-01767 LSCC WXS tissue_normal CPT0321470006 CPT0321470006.WholeExome.RP-1303.bam 22938170291 BAM submitted_aligned CPTAC3 6e91b34a-4caf-434f-a558-396275315354 e584054d4fad61e5f24688c9ade28fe9 {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.WXS.A.hg38 C3N-01767 LSCC WXS tissue_normal CPT0321470006 c03e6a56-4b54-4110-a0ef-30ffafdb87d6_wxs_gdc_realn.bam 32206591894 BAM harmonized CPTAC3 76d652af-cabd-468b-bd01-e68a4990d106 dd8f458537919602add5b14580622482 {"aliquot_tag": "ALQ_5ca54f2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01767.WXS.N C3N-01767 LSCC WXS blood_normal CPT0321500002 CPT0321500002.WholeExome.RP-1303.bam 19290589678 BAM submitted_aligned CPTAC3 f5020bcd-0fb3-4806-800e-164344ccc621 2f1c84b94012a277a9fa4284bc9c6cac {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01767.WXS.N.hg38 C3N-01767 LSCC WXS blood_normal CPT0321500002 d776e407-5302-45a0-8132-f5cb9827057b_wxs_gdc_realn.bam 26155568849 BAM harmonized CPTAC3 4eca83e0-453b-4ef4-b6fb-adbea829f224 a96adc79a1c9e17682dff49851504210 {"aliquot_tag": "ALQ_7bdb9f5e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01767.WXS.T C3N-01767 LSCC WXS tumor CPT0321460006 CPT0321460006.WholeExome.RP-1303.bam 21197047234 BAM submitted_aligned CPTAC3 56e689fd-433a-4531-94c9-d02a45ea1fd3 1f115af38dd62cd9549ce374c802b3f8 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01767.WXS.T.hg38 C3N-01767 LSCC WXS tumor CPT0321460006 8f5b7ba8-7564-4f6d-96ce-a72930454080_wxs_gdc_realn.bam 28847554983 BAM harmonized CPTAC3 2d7deeec-610d-400b-87b2-8192c8f5e45b 77190c1d2e6c0cd72dd59f5a73f84895 {"aliquot_tag": "ALQ_38aa7d42", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.MethArray.Green.A C3N-01768 LSCC Methylation_Array tissue_normal CPT0321520007 204372030106_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9feecee2-5cbc-4ca6-ae76-0fc7332781a4 b14eec3b793a08310d6f2b46a48593fc {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.MethArray.Green.T C3N-01768 LSCC Methylation_Array tumor CPT0321510006 204367490093_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e2174935-b01b-4222-9abb-370431b0a62c f94fe5a62809a1903fa7a179c4c7c38b {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.MethArray.Red.A C3N-01768 LSCC Methylation_Array tissue_normal CPT0321520007 204372030106_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 8dbe97f4-0232-48c5-a1ad-9f76382642c5 4232e3e9b4282732940e7371a3e02f02 {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.MethArray.Red.T C3N-01768 LSCC Methylation_Array tumor CPT0321510006 204367490093_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 a3f38dcb-3122-4f7e-b332-8ca848aaadd4 68e1d41fd2c0bd9a3d239d47d997d20f {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.miRNA-Seq.A.hg38 C3N-01768 LSCC miRNA-Seq tissue_normal CPT0321520010 c4737c06-9e08-487e-9e38-137ec9218e86_mirnaseq_gdc_realn.bam 204664640 BAM harmonized CPTAC3 ebbe7a21-f275-4170-822f-e9ff333c0133 9a36a20090a25cccfed4c3fe52b71d19 {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.miRNA-Seq.S40_L007_R1.T C3N-01768 LSCC miRNA-Seq tumor CPT0321510009 200224_UNC31-K00269_0267_AHC722BBXY_CTCAGA_S40_L007_R1_001.unaln.bam 151075223 BAM S40_L007_R1 submitted_unaligned CPTAC3 850ca6cc-a1ed-4bb9-bd94-fc7215eed4e4 13e97484417a5f35c4b6fc467fe195d2 {"aliquot_tag": "ALQ_d1696f66", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.miRNA-Seq.S9_L001_R1.A C3N-01768 LSCC miRNA-Seq tissue_normal CPT0321520010 200325_UNC31-K00269_0272_AHHC2NBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 181632693 BAM S9_L001_R1 submitted_unaligned CPTAC3 668f6789-5615-4c75-84ec-44a7b65d8298 02322da7a77bca3c6554a26d6c96ec93 {"aliquot_tag": "ALQ_f60e9c53", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.miRNA-Seq.T.hg38 C3N-01768 LSCC miRNA-Seq tumor CPT0321510009 25be4b4d-bfa8-416c-970c-16dd372a22ed_mirnaseq_gdc_realn.bam 170089882 BAM harmonized CPTAC3 c6afc43e-da34-4a31-87c3-92f45bf35687 457ea2afc50a01438493951f210957eb {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.RNA-Seq.chimeric.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.chimeric.gdc_realn.bam 120482408 BAM chimeric harmonized CPTAC3 b110980b-23b1-4d8a-b569-24d898cfafa0 c8fd60ab5d8e5ef874ea0ca6b5853e7a {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.RNA-Seq.chimeric.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.chimeric.gdc_realn.bam 37336376 BAM chimeric harmonized CPTAC3 acb17395-3682-45e7-a24b-47bd9269f848 68ca98209ffb24a0c6ef682491570721 {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.RNA-Seq.genomic.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.genomic.gdc_realn.bam 7569369780 BAM genomic harmonized CPTAC3 80719a2e-d37a-49e8-b5dc-9d3dee64099d 9c4e2f8f96e301b990fc7834fbc23b5d {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.RNA-Seq.genomic.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.genomic.gdc_realn.bam 8461332705 BAM genomic harmonized CPTAC3 f505a6d2-3821-4437-927d-2d17617650e2 9d2a56492a7ace23725e8b1acca31859 {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.RNA-Seq.S17_L005_R1.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R1_001.fastq.gz 3904926175 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 ff49099c-84c9-4b43-95bf-cf49d08c1306 6f98e4ee3927dd6af509fb4dc5576347 {"aliquot_tag": "ALQ_f60e9c53", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.RNA-Seq.S17_L005_R2.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R2_001.fastq.gz 4082260248 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 658408cb-4d41-4938-860a-475a8db3c829 09986d67ee3293301a20edbc47d302a4 {"aliquot_tag": "ALQ_f60e9c53", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.RNA-Seq.S8_L002_R1.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R1_001.fastq.gz 4086471599 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 7ccc431f-666a-4768-9062-f988c0d3d0fb a32f6ea1e7e76e61205f3d361dc48d7c {"aliquot_tag": "ALQ_d1696f66", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.RNA-Seq.S8_L002_R2.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R2_001.fastq.gz 4332523665 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 80d49158-38aa-452a-aec9-2639d913b7bd 01da92f2ce0431abfff337d2d37bb41a {"aliquot_tag": "ALQ_d1696f66", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.RNA-Seq.transcriptome.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.transcriptome.gdc_realn.bam 10787624770 BAM transcriptome harmonized CPTAC3 258e5a2c-b73d-4773-afb2-9d39b38f41fe 24df92ba37b8c8a0478002751e3ab8fd {"aliquot_tag": "ALQ_f60e9c53", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.RNA-Seq.transcriptome.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.transcriptome.gdc_realn.bam 10366381465 BAM transcriptome harmonized CPTAC3 033a9686-ce95-4baf-a083-61fcbf318097 5a1ea746fde43864615d140403317c8c {"aliquot_tag": "ALQ_d1696f66", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.WGS.N C3N-01768 LSCC WGS blood_normal CPT0321570002 CPT0321570002.WholeGenome.RP-2158.bam 31767677160 BAM submitted_aligned CPTAC3 2225e00f-81ea-45c2-bffb-bd2bee203423 3288289cbe0cca73174ffbe7d30ae507 {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01768.WGS.N.hg38 C3N-01768 LSCC WGS blood_normal CPT0321570002 886127a1-cd4e-4529-aef1-8f1d1c4c0b45_wgs_gdc_realn.bam 93088951602 BAM harmonized CPTAC3 2891e61e-9bd9-4d13-9464-8f400cf56e48 442d2f7bdd94803a12e7586f655e8117 {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01768.WGS.T C3N-01768 LSCC WGS tumor CPT0321510006 CPT0321510006.WholeGenome.RP-2158.bam 24801840088 BAM submitted_aligned CPTAC3 427d9252-69b5-4f48-8323-a719765e3780 d0cdfa7b5bbfd513708f5587bb07e499 {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.WGS.T.hg38 C3N-01768 LSCC WGS tumor CPT0321510006 a4ebedaa-1f18-4ae2-9780-4c700c702a5f_wgs_gdc_realn.bam 72094930863 BAM harmonized CPTAC3 1692c0c9-db04-4436-b4c8-8f1fc8bb0947 8010d13a1ef2c90237696e12791332d2 {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.WXS.A C3N-01768 LSCC WXS tissue_normal CPT0321520007 CPT0321520007.WholeExome.RP-1303.bam 24024487355 BAM submitted_aligned CPTAC3 0f16c9f0-6a94-4352-b978-a2acbb8d6af3 6a9c1952da48b904f38dcb3922d26bb9 {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.WXS.A.hg38 C3N-01768 LSCC WXS tissue_normal CPT0321520007 e14eb7fa-9a3a-4d87-87ee-697063479156_wxs_gdc_realn.bam 33673883749 BAM harmonized CPTAC3 8d466de6-829e-4f64-9483-102bf43d4c08 821a1f6811b389cd20a840dddd1366fb {"aliquot_tag": "ALQ_717138b1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01768.WXS.N C3N-01768 LSCC WXS blood_normal CPT0321570002 CPT0321570002.WholeExome.RP-1303.bam 35584360083 BAM submitted_aligned CPTAC3 cf36e13e-9476-49aa-aa72-a810535926e7 e87a46c9f85943008f5e8d89dc1355b3 {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01768.WXS.N.hg38 C3N-01768 LSCC WXS blood_normal CPT0321570002 886127a1-cd4e-4529-aef1-8f1d1c4c0b45_wxs_gdc_realn.bam 49030851757 BAM harmonized CPTAC3 989a5a4b-53a7-4a48-adf6-f346309c32fe e1b178b0c446c433a931ac64e591370b {"aliquot_tag": "ALQ_c9fb434e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01768.WXS.T C3N-01768 LSCC WXS tumor CPT0321510006 CPT0321510006.WholeExome.RP-1303.bam 18164610686 BAM submitted_aligned CPTAC3 dba9ef64-cfa3-4345-9a44-c41d8b687b44 2b918eb9879fc4a993f8a7eefdd3f0d3 {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01768.WXS.T.hg38 C3N-01768 LSCC WXS tumor CPT0321510006 a4ebedaa-1f18-4ae2-9780-4c700c702a5f_wxs_gdc_realn.bam 25217341655 BAM harmonized CPTAC3 69781335-91fe-4811-a1b2-c6ad27bd1d46 b1e18b51e8d67ae7cbec3e72f8b54eca {"aliquot_tag": "ALQ_41d672f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01798.MethArray.Green.T C3N-01798 GBM Methylation_Array tumor CPT0167750007 203028200014_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc649119-3be9-4de6-b57d-1ab40e143a24 6d3adfe2db97ad37c17977c8239ed174 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.MethArray.Red.T C3N-01798 GBM Methylation_Array tumor CPT0167750007 203028200014_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 38e560da-cfc0-48fc-a066-666ad7f58db6 e862d5d1e0291504e37815cdeb8f1ee5 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.miRNA-Seq.S5_L001_R1.T C3N-01798 GBM miRNA-Seq tumor CPT0167750010 181119_UNC31-K00269_0165_AH27WCBBXY_CAACTA_S5_L001_R1_001.unaln.bam 263490816 BAM S5_L001_R1 submitted_unaligned CPTAC3 53add06a-ea43-4035-a718-280278f6f028 7667813e001e634b79d977f82d829e2c {"aliquot_tag": "ALQ_c08af20e", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.miRNA-Seq.T.hg38 C3N-01798 GBM miRNA-Seq tumor CPT0167750010 93a0b5a3-e60b-4b0b-a685-14c3078c0b6d_mirnaseq_gdc_realn.bam 294984219 BAM harmonized CPTAC3 ff1f1f8d-9ff4-42b3-ad0a-b80809484cb9 2a88d26cb19b6c18eb9751fd0d81b905 {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.RNA-Seq.chimeric.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.chimeric.gdc_realn.bam 33436135 BAM chimeric harmonized CPTAC3 df649b81-3315-46d5-8318-95786672ecf7 96827591ef3977c2ca86b2f719c7f2fd {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.RNA-Seq.genomic.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.genomic.gdc_realn.bam 9124055049 BAM genomic harmonized CPTAC3 f2dc7610-c8b6-4417-b2c4-d4cca11dbceb 2aa30fee85485b075db79d395a8de51c {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.RNA-Seq.S15_L004_R1.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 4180544485 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 005e5a7c-4809-472d-8819-a25f7833a631 8fce60e163e7de9232649f05a85bdd02 {"aliquot_tag": "ALQ_c08af20e", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.RNA-Seq.S15_L004_R2.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4540740441 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 bbf5b3a8-d267-4999-8a95-583d264a55d8 8d38031042ed03df428e0bb48aaa6556 {"aliquot_tag": "ALQ_c08af20e", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.RNA-Seq.transcriptome.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.transcriptome.gdc_realn.bam 11175709099 BAM transcriptome harmonized CPTAC3 ecb795bc-6215-4f5d-a81d-d6ceb01603c0 0b52dd193bd70d0ae0748a99ad00f100 {"aliquot_tag": "ALQ_c08af20e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.scRNA-Seq.S3_L001_R1.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R1_001.fastq.gz 11173530187 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 39077fc2-1010-4e46-b6d7-04f14957584c cfe99402393be7dfdbb562072fb446b7 {"aliquot_tag": "ALQ_b0e00681", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.scRNA-Seq.S3_L001_R2.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R2_001.fastq.gz 26931565159 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 c5b9e968-afcd-413b-b96c-38ccf550950f f6598c0caa7560c9006b132d515e1295 {"aliquot_tag": "ALQ_b0e00681", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.scRNA-Seq.T.hg38 C3N-01798 GBM scRNA-Seq tumor CPT0167750015 possorted_genome_bam.bam 32346182334 BAM harmonized CPTAC3 a72c6a09-a388-4146-81b1-35161b7e952d a399407ab72dbf08fc883f35e7af53a4 {"aliquot_tag": "ALQ_b0e00681", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.WGS.N C3N-01798 GBM WGS blood_normal CPT0167810002 CPT0167810002.WholeGenome.RP-1303.bam 67516152886 BAM submitted_aligned CPTAC3 842ab574-e778-41d8-9999-5f5bdbf239dc e42d563bae88ec65ce0b0377b03ea51d {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01798.WGS.N.hg38 C3N-01798 GBM WGS blood_normal CPT0167810002 3fe573bd-7595-4c87-8006-ae55bfb46f6d_wgs_gdc_realn.bam 97251429797 BAM harmonized CPTAC3 eabb8aaa-0339-4d65-828a-4c144da9442d 5ab6c6a438f55908bb3b16bdae6126bb {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01798.WGS.T C3N-01798 GBM WGS tumor CPT0167750007 CPT0167750007.WholeGenome.RP-1303.bam 67719339828 BAM submitted_aligned CPTAC3 0ec21406-e51f-4958-a0aa-583cd64a81d2 b919db9dcd3c6a9832766e7399879228 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.WGS.T.hg38 C3N-01798 GBM WGS tumor CPT0167750007 6a86b0fc-bb6a-4dca-9e8c-32aa9d36e020_wgs_gdc_realn.bam 99552056200 BAM harmonized CPTAC3 b0f9efa7-91ee-4fb1-b03a-5472c3eb6957 125025949448b41db7df77a8d5c7521e {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.WXS.N C3N-01798 GBM WXS blood_normal CPT0167810002 CPT0167810002.WholeExome.RP-1303.bam 23810090159 BAM submitted_aligned CPTAC3 a1acc44e-f580-46a3-b5f9-41bd4b323a43 8c99cf4934e23fb8049146841fd83c00 {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01798.WXS.N.hg38 C3N-01798 GBM WXS blood_normal CPT0167810002 3fe573bd-7595-4c87-8006-ae55bfb46f6d_wxs_gdc_realn.bam 32396041287 BAM harmonized CPTAC3 f9976b08-ef67-4a39-95ad-5c5a47a4ab4a acb7b1cbd99af47664c072bcb59cd784 {"aliquot_tag": "ALQ_3349b676", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01798.WXS.T C3N-01798 GBM WXS tumor CPT0167750007 CPT0167750007.WholeExome.RP-1303.bam 20526333458 BAM submitted_aligned CPTAC3 5af3f567-b24e-4751-9348-df114ca852c2 82afe9fe33e563cb6164a970a6abc86c {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01798.WXS.T.hg38 C3N-01798 GBM WXS tumor CPT0167750007 6a86b0fc-bb6a-4dca-9e8c-32aa9d36e020_wxs_gdc_realn.bam 27884846124 BAM harmonized CPTAC3 d8d603aa-6b17-4e01-8b38-78cfb3047118 f9665a78f13e4ba5aed0f3e3c56f1523 {"aliquot_tag": "ALQ_47f556ec", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.MethArray.Green.A C3N-01799 LUAD Methylation_Array tissue_normal CPT0089360009 203027380028_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 599f1b8f-e3ea-4bed-a548-6d0c777de0e9 4e3290051ac88c6b872b73e6d7449572 {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.MethArray.Green.T C3N-01799 LUAD Methylation_Array tumor CPT0089340009 202234380061_R08C01_Grn.idat 13676233 IDAT Green NA CPTAC3 ddc6b27a-3420-40df-a9a7-677236ddd882 fd89bf24704d3d8d2ff0d80dc4e63652 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.MethArray.Red.A C3N-01799 LUAD Methylation_Array tissue_normal CPT0089360009 203027380028_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 4ccae785-614c-443f-8db4-922661398e69 bebe7ae3e66f71d1ec1680aa7e5736a9 {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.MethArray.Red.T C3N-01799 LUAD Methylation_Array tumor CPT0089340009 202234380061_R08C01_Red.idat 13676233 IDAT Red NA CPTAC3 ce7d815a-24d9-44c4-9988-3a67a37aca41 a630e39383743e2b3a1cc882928d0fc8 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.miRNA-Seq.A.hg38 C3N-01799 LUAD miRNA-Seq tissue_normal CPT0089360006 2fa7d37b-74a4-4358-834a-dfedaf4d4787_mirnaseq_gdc_realn.bam 218365642 BAM harmonized CPTAC3 4a2389c0-5ad7-44f3-86b8-539841de1ab7 b79fd41a07dd7d24597af9fede8a09f1 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.miRNA-Seq.S31_L003_R1.T C3N-01799 LUAD miRNA-Seq tumor CPT0089340006 181119_UNC31-K00269_0165_AH27WCBBXY_CAGATC_S31_L003_R1_001.unaln.bam 247898241 BAM S31_L003_R1 submitted_unaligned CPTAC3 fa8c2252-649e-4845-9aea-da9164e81dde f6367f3e1f479425b8136fee619fbefa {"aliquot_tag": "ALQ_c4cd70f0", "sample": "S31", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.miRNA-Seq.S4_L005_R1.A C3N-01799 LUAD miRNA-Seq tissue_normal CPT0089360006 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L005_R1_001.unaln.bam 192930755 BAM S4_L005_R1 submitted_unaligned CPTAC3 849ada41-dd55-4618-ab16-a4046fd61722 496392bd7da2c6cf43f274e993382b4f {"aliquot_tag": "ALQ_be0d2390", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.miRNA-Seq.T.hg38 C3N-01799 LUAD miRNA-Seq tumor CPT0089340006 0548c5e7-1752-4d97-9f14-35b2ec33a66a_mirnaseq_gdc_realn.bam 268907903 BAM harmonized CPTAC3 47f6e3f8-dc1a-4650-8396-209412843431 2685eff92c0983b3fc60141e3129fb38 {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.RNA-Seq.chimeric.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.chimeric.gdc_realn.bam 77771243 BAM chimeric harmonized CPTAC3 f64708f9-4e8d-4cf6-9bf1-695c986ebaf3 2fc5dec7b209c3b7a88b6a97170154b9 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.RNA-Seq.chimeric.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.chimeric.gdc_realn.bam 98767640 BAM chimeric harmonized CPTAC3 d1218bcf-21ae-4fa8-a479-40053817a5ac ede8aeaa474ac71f643869df57d5ba50 {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.RNA-Seq.genomic.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.genomic.gdc_realn.bam 8557746792 BAM genomic harmonized CPTAC3 7029493f-dca9-489f-a6d8-6dce457bd2c7 02ed0ab4380cd0354b7458f5e99e7848 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.RNA-Seq.genomic.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.genomic.gdc_realn.bam 9884502257 BAM genomic harmonized CPTAC3 3bc94e13-e05d-445c-8e40-56e0528c6f0a 391debbdb174037c2492a405f5f287b4 {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.RNA-Seq.S20_L005_R1.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4265498706 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 8c879f0f-6ff0-4ec4-a046-e7dbfae29568 08bf6eec1749e2ba6d2c3c5cb7ad39af {"aliquot_tag": "ALQ_be0d2390", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.RNA-Seq.S20_L005_R2.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4393858109 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 84d28597-e5a3-45b9-84cc-7b365728175a 218444c6cf389acf2835a4d1621e6c94 {"aliquot_tag": "ALQ_be0d2390", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.RNA-Seq.S4_L001_R1.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R1_001.fastq.gz 4278461848 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 2e828388-091a-4362-a141-d6849d21224b e6fb2f55770ff46abd38afa96d7e4386 {"aliquot_tag": "ALQ_c4cd70f0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.RNA-Seq.S4_L001_R2.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4568947945 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 737e0b9e-3029-4ebe-a3c1-ca9b807072e5 da86d6a76214fe19634c4d6e364322d5 {"aliquot_tag": "ALQ_c4cd70f0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.RNA-Seq.transcriptome.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.transcriptome.gdc_realn.bam 9871552828 BAM transcriptome harmonized CPTAC3 809b8c20-5ea4-4656-807c-d1099456fcf6 52af17007a5c875efd728efa185f1ec6 {"aliquot_tag": "ALQ_be0d2390", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.RNA-Seq.transcriptome.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.transcriptome.gdc_realn.bam 9249690365 BAM transcriptome harmonized CPTAC3 d3ef56d6-ab93-43d5-a6b9-1256d0f4b814 b86c0f6f04527b54ea1031c88db037dd {"aliquot_tag": "ALQ_c4cd70f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.WGS.A C3N-01799 LUAD WGS tissue_normal CPT0089360009 CPT0089360009.WholeGenome.RP-1303.bam 53843619893 BAM submitted_aligned CPTAC3 f9bb6fce-6c40-4fb7-a3a3-b984eab44106 c935879677922fe2be6c4983e222dd1f {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.WGS.A.hg38 C3N-01799 LUAD WGS tissue_normal CPT0089360009 ae11e403-c9c4-48e5-b4f0-ad6495db67cf_wgs_gdc_realn.bam 78828347607 BAM harmonized CPTAC3 b55a4c81-a8b6-4394-a388-4ed041f5c5c1 b08d2fbfb4f7e4226d54763b01e5f6fb {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.WGS.N C3N-01799 LUAD WGS blood_normal CPT0091320002 CPT0091320002.WholeGenome.RP-1303.bam 58434239583 BAM submitted_aligned CPTAC3 37967db6-0a05-410e-9f1c-9aa0ec8260c6 25545f690548bf78d98da8728d1701c2 {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01799.WGS.N.hg38 C3N-01799 LUAD WGS blood_normal CPT0091320002 680fb7ef-3c8a-4c38-9218-50fba1f412a1_wgs_gdc_realn.bam 87494110206 BAM harmonized CPTAC3 a01696bd-4e49-45a2-80ae-7382ea01ac28 a1823fb2f6ad0db0550d1a60cde3c264 {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01799.WGS.T C3N-01799 LUAD WGS tumor CPT0089340009 CPT0089340009.WholeGenome.RP-1303.bam 62465277556 BAM submitted_aligned CPTAC3 da676615-14fd-4512-b384-2087b90c936b 197d200dbac264e3234e0b5e18f29449 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.WGS.T.hg38 C3N-01799 LUAD WGS tumor CPT0089340009 51034358-c855-496f-96f4-28b8ecad1da1_wgs_gdc_realn.bam 92519009870 BAM harmonized CPTAC3 ba1cb76d-87b5-4184-9c26-9f5721a2003a 715c9598ab48ef03b97a45977abb164d {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.WXS.A C3N-01799 LUAD WXS tissue_normal CPT0089360009 CPT0089360009.WholeExome.RP-1303.bam 37200967468 BAM submitted_aligned CPTAC3 9f7b2994-6143-4d99-988b-04a636332451 02e8b454635ff00180103bade48639dd {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.WXS.A.hg38 C3N-01799 LUAD WXS tissue_normal CPT0089360009 ae11e403-c9c4-48e5-b4f0-ad6495db67cf_wxs_gdc_realn.bam 49796966179 BAM harmonized CPTAC3 55b8ca66-dddb-4a1b-8645-4bad0f9b963c d19a3d38529a6a157a81c4bacada09ca {"aliquot_tag": "ALQ_2eb23e01", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01799.WXS.N C3N-01799 LUAD WXS blood_normal CPT0091320002 CPT0091320002.WholeExome.RP-1303.bam 29204639238 BAM submitted_aligned CPTAC3 48fecd1e-489d-4ac5-a520-6fbb212dedf5 f3a9ddda4b77cdda3bbea0c1ddd2f88d {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01799.WXS.N.hg38 C3N-01799 LUAD WXS blood_normal CPT0091320002 680fb7ef-3c8a-4c38-9218-50fba1f412a1_wxs_gdc_realn.bam 38756308494 BAM harmonized CPTAC3 1dea8e0f-ecf3-48a8-938a-356eaeb0bf76 af555d85e80e5f2799f4df754223c675 {"aliquot_tag": "ALQ_b3a50fb0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01799.WXS.T C3N-01799 LUAD WXS tumor CPT0089340009 CPT0089340009.WholeExome.RP-1303.bam 41167587286 BAM submitted_aligned CPTAC3 e7e4fa5c-dc9c-4cbf-85b8-44bf7170f3cb 2afae23ff26689448469b3ac7fa21720 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01799.WXS.T.hg38 C3N-01799 LUAD WXS tumor CPT0089340009 51034358-c855-496f-96f4-28b8ecad1da1_wxs_gdc_realn.bam 55137442882 BAM harmonized CPTAC3 ea3614f9-cb20-412e-8029-564d1904fbf2 c05e445a1797b4b1a119046c4f28dcc1 {"aliquot_tag": "ALQ_54726d61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.MethArray.Green.T C3N-01802 UCEC Methylation_Array tumor CPT0080030009 202184900128_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 4a471bb4-c141-4a99-a947-037963df6156 42b445f9f2287393dc2260d54ff1ec56 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.MethArray.Red.T C3N-01802 UCEC Methylation_Array tumor CPT0080030009 202184900128_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 70fc20e7-155a-45c2-9c3d-090fc2b41851 e249960ee73b4b8532a06df94f23dfe8 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.miRNA-Seq.S15_L001_R1.T C3N-01802 UCEC miRNA-Seq tumor CPT0080030006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L001_R1_001.unaln.bam 164014778 BAM S15_L001_R1 submitted_unaligned CPTAC3 4f6226a0-7276-41bf-9f3f-50ed0c782036 212d9d3a67e1d0940b0bc34b176d0e10 {"aliquot_tag": "ALQ_65e19b9d", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.miRNA-Seq.T.hg38 C3N-01802 UCEC miRNA-Seq tumor CPT0080030006 a14d4e70-72e3-48a8-ad26-182fa764b880_mirnaseq_gdc_realn.bam 182574657 BAM harmonized CPTAC3 7863a45f-d1de-4f99-b163-60504fe25ce7 0bc1855aa24fabb79b61862651de5d8c {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.chimeric.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.chimeric.gdc_realn.bam 40385468 BAM chimeric harmonized CPTAC3 3cb1a09a-4486-46af-a1d4-d7a258f5a16d 853ecca9b5f26bbbd07b445514a79b08 {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.chimeric.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.chimeric.gdc_realn.bam 140822640 BAM chimeric harmonized CPTAC3 e0a10d62-8602-41a1-aafe-d0b5cb1b2a4c ed334aa9e85a7d09e4abe1eecf71b6c4 {"aliquot_tag": "ALQ_74c5fb9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.genomic.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.genomic.gdc_realn.bam 9189877272 BAM genomic harmonized CPTAC3 aed7686c-dbfd-48b5-9201-24a2d74a9cc6 eebd615da0bc1de8f2ec1e719ef707ab {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.genomic.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.genomic.gdc_realn.bam 11026207218 BAM genomic harmonized CPTAC3 fe58fb9b-723d-40cb-a142-ff9e755a2e0a b89c212f721a272574c770adf70baaa2 {"aliquot_tag": "ALQ_74c5fb9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.S16_L004_R1.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4415765799 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 06944ccc-05d4-42d9-917f-3e3e86355149 ec1309b9e47af72489bb4eea7cd0ceb2 {"aliquot_tag": "ALQ_65e19b9d", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.S16_L004_R2.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4625364899 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 6820bed8-165e-49af-bfeb-3cd127060651 3dd896aa5793720ede5065249ad13f41 {"aliquot_tag": "ALQ_65e19b9d", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.S16_R1.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R1_001.fastq.gz 6163519789 FASTQ S16_R1 submitted_unaligned CPTAC3 b3b63880-a5f9-4310-bffc-cbcbedb9fe2f 6f871c085cb09718db358594aab8cfbd {"aliquot_tag": "ALQ_74c5fb9e", "sample": "S16", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.S16_R2.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R2_001.fastq.gz 6433473055 FASTQ S16_R2 submitted_unaligned CPTAC3 eebc17b7-00db-482a-a4e2-aadc74ec2778 cc6e98f8e0c3093500a84a722facdd03 {"aliquot_tag": "ALQ_74c5fb9e", "sample": "S16", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.transcriptome.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.transcriptome.gdc_realn.bam 12349103051 BAM transcriptome harmonized CPTAC3 74cccdd9-a929-4937-ac33-1cc3fe690bc1 fd4379f45365047a2b65b0170559aab6 {"aliquot_tag": "ALQ_65e19b9d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.RNA-Seq.transcriptome.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.transcriptome.gdc_realn.bam 5514520660 BAM transcriptome harmonized CPTAC3 bf4f1c2d-6bc1-4747-a82b-a38276d86b17 35666ce61bbcded19df6ec73c6d2dcc3 {"aliquot_tag": "ALQ_74c5fb9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.WGS.N C3N-01802 UCEC WGS blood_normal CPT0080810002 CPT0080810002.WholeGenome.RP-1303.bam 76482218544 BAM submitted_aligned CPTAC3 c6bb3664-f51d-43c7-a67d-eddc5264168a 251c709abc2ccb8224a6b97b9673d6bb {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01802.WGS.N.hg38 C3N-01802 UCEC WGS blood_normal CPT0080810002 f5ae7b0e-9213-4424-a10e-7f1383d33b5b_gdc_realn.bam 113580834663 BAM harmonized CPTAC3 68ed2c5e-6ac7-4305-b273-d1c649e89954 2b30d4cd69dbca2cad4b4cf67e4086e5 {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01802.WGS.T C3N-01802 UCEC WGS tumor CPT0080030009 CPT0080030009.WholeGenome.RP-1303.bam 71175352210 BAM submitted_aligned CPTAC3 1e048b0a-ec53-4bee-a536-4b122545f4e6 06a1aedde382fa61fb2b4564f2a82a93 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.WGS.T.hg38 C3N-01802 UCEC WGS tumor CPT0080030009 ef72c57f-f998-4e9a-a563-b5969a93bcd8_gdc_realn.bam 108763450790 BAM harmonized CPTAC3 95d70287-457f-4f51-80b5-25d771f72a64 8ba51683e7e782c9b505fa9d4b484d09 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.WXS.N C3N-01802 UCEC WXS blood_normal CPT0080810002 CPT0080810002.WholeExome.RP-1303.bam 37393436253 BAM submitted_aligned CPTAC3 4f0aba5e-8b80-4c64-a93f-ac201bc23ebe ef46d30d78542a21bba3d89df00ed484 {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01802.WXS.N.hg38 C3N-01802 UCEC WXS blood_normal CPT0080810002 f5ae7b0e-9213-4424-a10e-7f1383d33b5b_gdc_realn.bam 50756030468 BAM harmonized CPTAC3 b16d3cc5-43af-4b25-ab64-b262492b6e42 1fc084fb44f548e2ee714a4be263fa42 {"aliquot_tag": "ALQ_f41f8e89", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01802.WXS.T C3N-01802 UCEC WXS tumor CPT0080030009 CPT0080030009.WholeExome.RP-1303.bam 28526205000 BAM submitted_aligned CPTAC3 8a4b482d-4bfb-4bc6-b38a-36632e59aed4 5c2d1e189aed70963524ce6da7dcd459 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01802.WXS.T.hg38 C3N-01802 UCEC WXS tumor CPT0080030009 ef72c57f-f998-4e9a-a563-b5969a93bcd8_gdc_realn.bam 39298212634 BAM harmonized CPTAC3 00527d6d-5b39-4a0e-a36a-30a88d5601ae 06baa61431f11dcdc14ce3f6f9d29f21 {"aliquot_tag": "ALQ_f55e860c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01803.MethArray.Green.A C3N-01803 CCRCC Methylation_Array tissue_normal CPT0384910006 205555390157_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7f08b3e4-9da7-417e-ade0-aad7fd51bda5 91d5c5635380cc4d404a85daa270c5d4 {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.MethArray.Green.T C3N-01803 CCRCC Methylation_Array tumor CPT0384890006 205555390118_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4d7bfef0-c2c6-4a71-b273-3c833898aa60 eaf161f6449d15c6c796ba41bdaec3c6 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.MethArray.Red.A C3N-01803 CCRCC Methylation_Array tissue_normal CPT0384910006 205555390157_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 4d174bf3-307f-4f68-871e-9ce0a0876cbc 6f55bf3ccc22621012a88a2678ce9b12 {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.MethArray.Red.T C3N-01803 CCRCC Methylation_Array tumor CPT0384890006 205555390118_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 23202e53-1ecd-43bb-8c05-ccb40ce90911 03be5a06d148b61a207a38eae1f5be44 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.miRNA-Seq.A.hg38 C3N-01803 CCRCC miRNA-Seq tissue_normal CPT0384910009 59cca0be-f560-43d1-8013-7c824c2475f9_mirnaseq_gdc_realn.bam 367048271 BAM harmonized CPTAC3 9e175c74-d616-4075-89a6-5cc92d3ede9d 681d4ae89c9fa6bb8776de32c6880372 {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.miRNA-Seq.S34_L003_R1.T C3N-01803 CCRCC miRNA-Seq tumor CPT0384890009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TATAAT_S34_L003_R1_001.unaln.bam 365876507 BAM S34_L003_R1 submitted_unaligned CPTAC3 11c29af7-b7d8-412b-835d-81bdec996bf3 93ecf85f4fd6b5ba485efa5df3da51e4 {"aliquot_tag": "ALQ_9e7f0416", "sample": "S34", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.miRNA-Seq.S35_L003_R1.A C3N-01803 CCRCC miRNA-Seq tissue_normal CPT0384910009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCATTC_S35_L003_R1_001.unaln.bam 339894078 BAM S35_L003_R1 submitted_unaligned CPTAC3 7ead2cd1-e42b-4447-942f-41bbdf707dd3 656c0966e24d72d35982e232e603bf13 {"aliquot_tag": "ALQ_65539c72", "sample": "S35", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.miRNA-Seq.T.hg38 C3N-01803 CCRCC miRNA-Seq tumor CPT0384890009 ac9ae554-1486-4091-914c-d98ec83a15d9_mirnaseq_gdc_realn.bam 390185262 BAM harmonized CPTAC3 1c2d783b-3236-4c69-ba52-afacb99197e4 7397ff4a4c317120d216d407f1b15db0 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.RNA-Seq.chimeric.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.chimeric.gdc_realn.bam 268771014 BAM chimeric harmonized CPTAC3 5b362c82-c6cd-4d3c-8840-1ac40fb5827d 57d63680e1a1aa23e75ad9423df586ad {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.RNA-Seq.chimeric.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.chimeric.gdc_realn.bam 273336136 BAM chimeric harmonized CPTAC3 b85e032d-0f69-41b0-a24f-ad4ff604f0d6 d7d37f9fd4378fb10bfa002bdf650668 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.RNA-Seq.genomic.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.genomic.gdc_realn.bam 8275351212 BAM genomic harmonized CPTAC3 59584b00-51ec-4cbb-9832-6393d3d4db4d 06f264484417161883376789c984787d {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.RNA-Seq.genomic.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.genomic.gdc_realn.bam 7835159591 BAM genomic harmonized CPTAC3 cce1b114-56e4-4c9a-8e8c-22fff389e37c b10fdf19686c95a5d8d70a7055842276 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.RNA-Seq.S11_L004_R1.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R1_001.fastq.gz 3750693333 FASTQ S11_L004_R1 submitted_unaligned CPTAC3 4c23de64-a0a4-40bb-a86a-cef9ca55b541 233b458d3f8ddf0b62decfef1ae87938 {"aliquot_tag": "ALQ_65539c72", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.RNA-Seq.S11_L004_R2.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R2_001.fastq.gz 4263216443 FASTQ S11_L004_R2 submitted_unaligned CPTAC3 8c1ad916-bfbb-4548-b4dd-a398afe4adc7 4882869fa92cbfb1cb6be435747a0152 {"aliquot_tag": "ALQ_65539c72", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.RNA-Seq.S17_L005_R1.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R1_001.fastq.gz 3483233393 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 8fc92fb9-a3cf-407c-a9c4-f46543c8a100 99addfd3055f4eac5b6d8e0e503a06d6 {"aliquot_tag": "ALQ_9e7f0416", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.RNA-Seq.S17_L005_R2.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R2_001.fastq.gz 3985080540 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 ea130a72-04ef-4721-8183-f4e149fcd097 bb2acc754947b6a8579e7c93e9c3f23a {"aliquot_tag": "ALQ_9e7f0416", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.RNA-Seq.transcriptome.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.transcriptome.gdc_realn.bam 9104726181 BAM transcriptome harmonized CPTAC3 7997c364-751b-42e4-b786-b95541672ba9 41b46313f0bc701f8b0fb7e11fe188f5 {"aliquot_tag": "ALQ_65539c72", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.RNA-Seq.transcriptome.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.transcriptome.gdc_realn.bam 8332766520 BAM transcriptome harmonized CPTAC3 5f5741d7-e1c8-4aa7-9616-14bb882b9dc1 69cbf34358268fd6ac058fdc54a5dd87 {"aliquot_tag": "ALQ_9e7f0416", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.WGS.N C3N-01803 CCRCC WGS blood_normal CPT0385470002 CPT0385470002.WholeGenome.RP-2158.bam 32913637065 BAM submitted_aligned CPTAC3 e23c5fc7-da3c-4d4b-9164-c7696d9ff97b 7b9c91e07d5c6189eb4bdd4e284c8715 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01803.WGS.N.hg38 C3N-01803 CCRCC WGS blood_normal CPT0385470002 f2a81e35-3ace-4506-aef2-b0d4cd490443_wgs_gdc_realn.bam 99069064720 BAM harmonized CPTAC3 772bf1ba-cb74-47ac-97d4-1200328d32fa ee6e4a1907374d368e5536bfea676c28 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01803.WGS.T C3N-01803 CCRCC WGS tumor CPT0384890006 CPT0384890006.WholeGenome.RP-2158.bam 21033309147 BAM submitted_aligned CPTAC3 64344e1f-cca5-4b28-ad4c-53e6e3cf31c1 c92a2bf72185f16395a19814a7f9ff3c {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.WGS.T.hg38 C3N-01803 CCRCC WGS tumor CPT0384890006 0498b57d-4f42-4a68-bb7a-35de7568ac78_wgs_gdc_realn.bam 62583483107 BAM harmonized CPTAC3 9bce70ed-679b-4d68-a335-8f31c6b1b384 82bcdcb1b01def92261344ae231384f3 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.WXS.A C3N-01803 CCRCC WXS tissue_normal CPT0384910006 CPT0384910006.WholeExome.RP-1303.bam 25734258909 BAM submitted_aligned CPTAC3 c242eebb-dc06-4d45-b4f6-20e3c8dd2602 f0b89e30249b60dfca5c856971125c53 {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01803.WXS.A.hg38 C3N-01803 CCRCC WXS tissue_normal CPT0384910006 09caaeaa-293f-45ae-a8b7-4933878a1ee8_wxs_gdc_realn.bam 35335371444 BAM harmonized CPTAC3 fc3f89c1-0f96-47e5-9462-b3d202f7dfe3 db485dce0c6c3489cb8e5823225aaa7f {"aliquot_tag": "ALQ_f5ec81e3", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01803.WXS.N C3N-01803 CCRCC WXS blood_normal CPT0385470002 CPT0385470002.WholeExome.RP-1303.bam 24683985625 BAM submitted_aligned CPTAC3 32dcf226-fe9e-418c-b5b6-57758e8b8b1a 1292f1b3a66f6ad770225e657faec9d9 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01803.WXS.N.hg38 C3N-01803 CCRCC WXS blood_normal CPT0385470002 f2a81e35-3ace-4506-aef2-b0d4cd490443_wxs_gdc_realn.bam 33924070067 BAM harmonized CPTAC3 da4aeacd-1225-44a8-9747-65f45b4b1086 96fc7e2e9c18e673204ad1eab841b872 {"aliquot_tag": "ALQ_6728a830", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01803.WXS.T C3N-01803 CCRCC WXS tumor CPT0384890006 CPT0384890006.WholeExome.RP-1303.bam 28211371643 BAM submitted_aligned CPTAC3 d8ea907a-ee21-4894-9fc1-f4178baae81a 59b32c18833f49ef803cc029c2278097 {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01803.WXS.T.hg38 C3N-01803 CCRCC WXS tumor CPT0384890006 0498b57d-4f42-4a68-bb7a-35de7568ac78_wxs_gdc_realn.bam 38811519433 BAM harmonized CPTAC3 cdfb95b4-bfae-42c7-b59f-9521ea2d2266 40944a29fb5d2da1ef4cb8aceaa0f70b {"aliquot_tag": "ALQ_ec01987", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01806.MethArray.Green.A C3N-01806 CCRCC Methylation_Array tissue_normal CPT0115710006 204373100050_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 36c8e2eb-7de9-490e-b378-4299abbf2f07 503d18adaa2d6f0b69d51f05b590e07d {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.MethArray.Green.T C3N-01806 CCRCC Methylation_Array tumor CPT0115680009 203219650217_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 943fd7a9-2ebc-48d8-a106-096099187760 5c3aea21dcbe404e663d23da6ceda26a {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.MethArray.Red.A C3N-01806 CCRCC Methylation_Array tissue_normal CPT0115710006 204373100050_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 a0f2629d-b29c-44a7-a461-af4efa7af71f 52f9311353457cedefa59810613fce1a {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.MethArray.Red.T C3N-01806 CCRCC Methylation_Array tumor CPT0115680009 203219650217_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 29d9a9ae-a80d-4b44-8001-d9090ad0ed5d 665d0988140ebce8e23b5d3f6b0fce30 {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.miRNA-Seq.A.hg38 C3N-01806 CCRCC miRNA-Seq tissue_normal CPT0115710009 9bf294ff-9477-45bd-92cc-df0474c457b0_mirnaseq_gdc_realn.bam 220484910 BAM harmonized CPTAC3 5712a026-438c-4ff9-a8dd-1b61ca3bb25a d1c3855ffecbb6f2ba0c971fadb7062b {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.miRNA-Seq.S20_L002_R1.T C3N-01806 CCRCC miRNA-Seq tumor CPT0115680006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGGCC_S20_L002_R1_001.unaln.bam 178513399 BAM S20_L002_R1 submitted_unaligned CPTAC3 ebb0d1b3-a4a9-453b-b3cc-e4c243c5ddf5 e5bd0efbc51a3a0ef80b30318be790da {"aliquot_tag": "ALQ_9e64695e", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.miRNA-Seq.S47_L005_R1.A C3N-01806 CCRCC miRNA-Seq tissue_normal CPT0115710009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGAAG_S47_L005_R1_001.unaln.bam 202505857 BAM S47_L005_R1 submitted_unaligned CPTAC3 180fd0bf-9466-40cf-ba1f-89680728b66e 23d7cef1cca8c46facc46aa3bbcfc6a2 {"aliquot_tag": "ALQ_c897c51b", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.miRNA-Seq.T.hg38 C3N-01806 CCRCC miRNA-Seq tumor CPT0115680006 365e5da7-bcf2-4591-a24e-b0077dffe6f4_mirnaseq_gdc_realn.bam 195323195 BAM harmonized CPTAC3 23def0a0-8daa-47a5-9036-db9be6f627c5 b53ce9085818096b205de35c749d25e0 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.RNA-Seq.chimeric.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.chimeric.gdc_realn.bam 43250241 BAM chimeric harmonized CPTAC3 b8358765-fe3b-4aca-adca-cc5d45d69aea 35dc91dcc43f3300530de8437fc7fe13 {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.RNA-Seq.chimeric.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.chimeric.gdc_realn.bam 24580315 BAM chimeric harmonized CPTAC3 f3ca1cdf-a085-45cd-b416-8aaee4fb26ed c1df3588d763c9c26a4c743e6b3141a5 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.RNA-Seq.genomic.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.genomic.gdc_realn.bam 9532008518 BAM genomic harmonized CPTAC3 330f6c49-cfb1-4cda-b569-c6cf9cb7c867 2335cb49e4f964115f9abc78ea5e16c0 {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.RNA-Seq.genomic.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.genomic.gdc_realn.bam 8042235703 BAM genomic harmonized CPTAC3 51969af9-c9b7-4217-a2d4-321d2dbdfbf1 3569e422f202abf522d059bfccdfb5a2 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.RNA-Seq.S24_L006_R1.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3590677616 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 acb2aa7e-d05f-4fbc-acab-292f9953f064 3ca573604af01627c81122168d18958f {"aliquot_tag": "ALQ_9e64695e", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.RNA-Seq.S24_L006_R2.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3950912340 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 962cc125-5e3b-4b43-afa5-e5e2819cd3d1 b730b93ecb28f260b76317628649c818 {"aliquot_tag": "ALQ_9e64695e", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.RNA-Seq.S78_L008_R1.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R1_001.fastq.gz 4463683051 FASTQ S78_L008_R1 submitted_unaligned CPTAC3 bcf0ebc5-4f98-41fb-98d5-70483aac5e09 c560f6971c149edb6d07e118662f611c {"aliquot_tag": "ALQ_c897c51b", "sample": "S78", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.RNA-Seq.S78_L008_R2.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R2_001.fastq.gz 4609980250 FASTQ S78_L008_R2 submitted_unaligned CPTAC3 75b2022c-28f9-4b36-81c5-83347dd4ef92 94df5d250af776348f7974b9362ed6ba {"aliquot_tag": "ALQ_c897c51b", "sample": "S78", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.RNA-Seq.transcriptome.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.transcriptome.gdc_realn.bam 11455491666 BAM transcriptome harmonized CPTAC3 f23ad047-3394-415d-ad65-269ac9b08789 5d2df3bc67031673fc3617db75724d6d {"aliquot_tag": "ALQ_c897c51b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.RNA-Seq.transcriptome.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.transcriptome.gdc_realn.bam 10691453104 BAM transcriptome harmonized CPTAC3 29e0860a-3072-4fae-b6ce-0a59d783f105 412695dfbbb76ca77183f3f9a7e60245 {"aliquot_tag": "ALQ_9e64695e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.WGS.A C3N-01806 CCRCC WGS tissue_normal CPT0115710006 CPT0115710006.WholeGenome.RP-1303.bam 53869491619 BAM submitted_aligned CPTAC3 9cf47423-62d8-4e36-b1cb-f7ea711c29f3 84ea2bb1cfd4d63c5daadf680c539ac6 {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.WGS.A.hg38 C3N-01806 CCRCC WGS tissue_normal CPT0115710006 64942c93-f992-4040-b6a2-f04ff39ccf4c_wgs_gdc_realn.bam 77191559557 BAM harmonized CPTAC3 87f5eb05-629c-48a3-869c-c526181f6146 31cc17a164c7421ceebceb2e16e04d1d {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.WGS.N C3N-01806 CCRCC WGS blood_normal CPT0116370002 CPT0116370002.WholeGenome.RP-1303.bam 67036880881 BAM submitted_aligned CPTAC3 1042e165-2bfa-43a6-bedc-7dc60c61e8d0 76ff4c74f36c7acf10b4460bb5bab5b4 {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01806.WGS.N.hg38 C3N-01806 CCRCC WGS blood_normal CPT0116370002 a62abc08-80e2-4fdc-bb57-02d81eee7e3b_wgs_gdc_realn.bam 97847247224 BAM harmonized CPTAC3 53c7840f-0805-4b2b-9066-72ad719a8daa c0b2adb4fa508254a3ba871192b1ac2d {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01806.WGS.T C3N-01806 CCRCC WGS tumor CPT0115680009 CPT0115680009.WholeGenome.RP-1303.bam 55773146760 BAM submitted_aligned CPTAC3 76d30c4e-9d2b-4d09-99ca-6a6fa1f2a378 ae5e76e35286e884f6a79559771ff27d {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.WGS.T.hg38 C3N-01806 CCRCC WGS tumor CPT0115680009 ff1a4870-ae40-4eda-a2c0-a0ad1de0dc3a_wgs_gdc_realn.bam 82319625603 BAM harmonized CPTAC3 d3680d05-9616-4efa-b98d-605b89ea9655 f1757671020aaf91c213922d4ebd512d {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.WXS.A C3N-01806 CCRCC WXS tissue_normal CPT0115710006 CPT0115710006.WholeExome.RP-1303.bam 23252039484 BAM submitted_aligned CPTAC3 627f9386-8f44-48d5-bde2-e5e0c954714c 1ba75ec02c2d004df3f0e61e2c9d4f1c {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.WXS.A.hg38 C3N-01806 CCRCC WXS tissue_normal CPT0115710006 64942c93-f992-4040-b6a2-f04ff39ccf4c_wxs_gdc_realn.bam 32148698914 BAM harmonized CPTAC3 a35ce486-5fa3-4080-9469-dbc7ab9b1ba1 265bdb0fbdb33dc032030928bc07b2bb {"aliquot_tag": "ALQ_5828d88a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01806.WXS.N C3N-01806 CCRCC WXS blood_normal CPT0116370002 CPT0116370002.WholeExome.RP-1303.bam 23643655307 BAM submitted_aligned CPTAC3 9be4093f-9063-4bdf-82b4-fe3e4a7500ad 6576f61c7e91b1e60c901201197dc73d {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01806.WXS.N.hg38 C3N-01806 CCRCC WXS blood_normal CPT0116370002 a62abc08-80e2-4fdc-bb57-02d81eee7e3b_wxs_gdc_realn.bam 32338387417 BAM harmonized CPTAC3 87223073-5f47-490c-9751-61d41316c209 f0a53b619aeed951eefed55f1a13b593 {"aliquot_tag": "ALQ_7a7cb1b8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01806.WXS.T C3N-01806 CCRCC WXS tumor CPT0115680009 CPT0115680009.WholeExome.RP-1303.bam 30338616925 BAM submitted_aligned CPTAC3 2707b3ff-09c1-4ed8-86f5-8a45686cedca 12d5c1bd53a8ccf6668fb1333f3743cf {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01806.WXS.T.hg38 C3N-01806 CCRCC WXS tumor CPT0115680009 ff1a4870-ae40-4eda-a2c0-a0ad1de0dc3a_wxs_gdc_realn.bam 41829478294 BAM harmonized CPTAC3 86eb98f9-9a37-4b1c-bddc-94ce570cff4b 9d0717cd9d6497d05fb79e16064c81ca {"aliquot_tag": "ALQ_edb74cf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.MethArray.Green.A C3N-01808 CCRCC Methylation_Array tissue_normal CPT0089480013 204930640011_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 77daa96d-acd2-4800-b4a8-5f1cb101e539 cc7ca04b0d59d5f3bb48125e4fed34de {"aliquot_tag": "ALQ_75496887", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.MethArray.Green.T C3N-01808 CCRCC Methylation_Array tumor CPT0089460009 202234360009_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 520e8b01-edfb-42b8-bb9e-95c376a0c0d4 b52f8250a5bd97cc86e07deab8db1270 {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.MethArray.Red.A C3N-01808 CCRCC Methylation_Array tissue_normal CPT0089480013 204930640011_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 951e93d1-f2c6-4cf8-9542-ed7daa3a67d4 9c4d6c12599dc04d831ce30afd5315ff {"aliquot_tag": "ALQ_75496887", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.MethArray.Red.T C3N-01808 CCRCC Methylation_Array tumor CPT0089460009 202234360009_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 823a8ab9-8a65-4695-8c9b-e522647b5cc9 510ec41f8582fdbaf4b52b7bb91ca2dc {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.miRNA-Seq.A.hg38 C3N-01808 CCRCC miRNA-Seq tissue_normal CPT0089480006 3a83e35a-2718-44e4-9140-de766ff1c957_mirnaseq_gdc_realn.bam 207153941 BAM harmonized CPTAC3 70f68fc3-2e05-49b0-bbb3-4ec5f1dbbcb5 726b4df39ad1710ec1251c4ec08a274b {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.miRNA-Seq.S11_L005_R1.A C3N-01808 CCRCC miRNA-Seq tissue_normal CPT0089480006 181108_UNC31-K00269_0163_BH23TVBBXY_GGCTAC_S11_L005_R1_001.unaln.bam 185627369 BAM S11_L005_R1 submitted_unaligned CPTAC3 c3ada68e-e0d1-499d-8e8a-dd671579bae4 db8a0d73039e29fca93b0fb82e4b22e9 {"aliquot_tag": "ALQ_1c38ad49", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.miRNA-Seq.S25_L003_R1.T C3N-01808 CCRCC miRNA-Seq tumor CPT0089460006 181119_UNC31-K00269_0165_AH27WCBBXY_ATCACG_S25_L003_R1_001.unaln.bam 181859052 BAM S25_L003_R1 submitted_unaligned CPTAC3 58985bb3-09b3-4247-a5a8-ef907bdc536b 265f582defc6a29ac32f1e668d283e12 {"aliquot_tag": "ALQ_a3081328", "sample": "S25", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.miRNA-Seq.T.hg38 C3N-01808 CCRCC miRNA-Seq tumor CPT0089460006 4c1f4c4d-f91e-43b7-b65d-cf0fff761ea1_mirnaseq_gdc_realn.bam 207383311 BAM harmonized CPTAC3 790f05da-eacc-4d03-bab8-1428e3e4a569 78e97695faf5f1137d797e6ac6f359b6 {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.RNA-Seq.chimeric.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.chimeric.gdc_realn.bam 93571200 BAM chimeric harmonized CPTAC3 7cc69a53-0c42-4439-94e9-487dac416485 dd50e9f38e653a552108d2143062df2f {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.RNA-Seq.chimeric.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.chimeric.gdc_realn.bam 34431085 BAM chimeric harmonized CPTAC3 66e9f885-005e-4ff8-867b-2de82852f8fb 4d449a0222e4e3163ebf35b15ffab0bc {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.RNA-Seq.genomic.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.genomic.gdc_realn.bam 9508422205 BAM genomic harmonized CPTAC3 116657b5-4199-447c-ab9f-6a4a463f49ed c4d58556d604c545ee0d6a64f348fd1b {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.RNA-Seq.genomic.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.genomic.gdc_realn.bam 7425489211 BAM genomic harmonized CPTAC3 e24b40ac-3566-43d3-8348-f3f4bcd5b135 3a6811e88054e4e6ad9b9c22c8bdae3e {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.RNA-Seq.S11_L003_R1.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R1_001.fastq.gz 4528881184 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 fdf08798-675e-478a-a72b-7b925d01a950 b158c9f6eb40258a0366711dee2e38fb {"aliquot_tag": "ALQ_1c38ad49", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.RNA-Seq.S11_L003_R2.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R2_001.fastq.gz 4993203081 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 b33516d1-94be-41ed-9b6d-ed28b701b8c8 36af7c4f1348ad80a74183730d41e686 {"aliquot_tag": "ALQ_1c38ad49", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.RNA-Seq.S48_L004_R1.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R1_001.fastq.gz 3429150091 FASTQ S48_L004_R1 submitted_unaligned CPTAC3 a71bea30-6a66-4c8f-b526-464c906f5b1a 0e876bccad6724217183d159d8ae7cf7 {"aliquot_tag": "ALQ_a3081328", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.RNA-Seq.S48_L004_R2.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R2_001.fastq.gz 3748221155 FASTQ S48_L004_R2 submitted_unaligned CPTAC3 bbe46ce6-99dc-400d-9e4b-f4ec1fd4a1e8 1837e8fc15d27c9ad046835914317f2e {"aliquot_tag": "ALQ_a3081328", "sample": "S48", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.RNA-Seq.transcriptome.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.transcriptome.gdc_realn.bam 11783830498 BAM transcriptome harmonized CPTAC3 662ea23e-0f6c-4e34-ae65-eafd3ca4990b a220a3c44ab45dc068d66ac2a830ff03 {"aliquot_tag": "ALQ_1c38ad49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.RNA-Seq.transcriptome.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.transcriptome.gdc_realn.bam 9368332116 BAM transcriptome harmonized CPTAC3 ef3b6048-587e-4534-98e3-3488a26bbf52 5858575c4ec5bd3dbd0d560aa322bde8 {"aliquot_tag": "ALQ_a3081328", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.WGS.A C3N-01808 CCRCC WGS tissue_normal CPT0089480009 CPT0089480009.WholeGenome.RP-1303.bam 51211838272 BAM submitted_aligned CPTAC3 4c2ffaed-95d3-4351-9812-0b51c23ea140 f1ff5d82942d6a8d967339a664495f0b {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.WGS.A.hg38 C3N-01808 CCRCC WGS tissue_normal CPT0089480009 0a4d912d-dfa2-40cf-bfbe-e78f6ee4057e_wgs_gdc_realn.bam 74569479437 BAM harmonized CPTAC3 5234b5a1-f316-4bc3-9740-538fb69714b3 e732acb7cc82d5fc045497355dac7024 {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.WGS.N C3N-01808 CCRCC WGS blood_normal CPT0091340002 CPT0091340002.WholeGenome.RP-1303.bam 58043850495 BAM submitted_aligned CPTAC3 7da57449-efe2-4d59-8a98-3f4276871237 ffb59b72ceaa04088ab8ff14d5b48a80 {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01808.WGS.N.hg38 C3N-01808 CCRCC WGS blood_normal CPT0091340002 b8024433-4467-4772-861e-9dc4b6d0d3a1_wgs_gdc_realn.bam 85433577110 BAM harmonized CPTAC3 0e7e9bd9-e159-4324-9a7c-5911678d4026 50387b6cb96f22a4742d2da7cab9f1bc {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01808.WGS.T C3N-01808 CCRCC WGS tumor CPT0089460009 CPT0089460009.WholeGenome.RP-1303.bam 72465823117 BAM submitted_aligned CPTAC3 16267105-b07a-4b4a-8c1d-3bd122729178 1cb728b44241b747c226880e9b8b1140 {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.WGS.T.hg38 C3N-01808 CCRCC WGS tumor CPT0089460009 875e2aa1-2d48-43e0-ab93-f937b70b80da_wgs_gdc_realn.bam 105734837760 BAM harmonized CPTAC3 20b73af5-f1f1-4abf-9efc-8e2adafa7500 a6ef127afb8a7ca9132fa9d0887456ff {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.WXS.A C3N-01808 CCRCC WXS tissue_normal CPT0089480009 CPT0089480009.WholeExome.RP-1303.bam 32916978370 BAM submitted_aligned CPTAC3 27e15c69-77d4-40ce-8173-ec77702c180c aa247c760260a03ef6c01f35e2325ff1 {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.WXS.A.hg38 C3N-01808 CCRCC WXS tissue_normal CPT0089480009 0a4d912d-dfa2-40cf-bfbe-e78f6ee4057e_wxs_gdc_realn.bam 44495852601 BAM harmonized CPTAC3 c487d3b7-f840-4725-afa5-50905ee92f15 6ae514ba271098ea7e1f4d255f520874 {"aliquot_tag": "ALQ_8c87b0d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01808.WXS.N C3N-01808 CCRCC WXS blood_normal CPT0091340002 CPT0091340002.WholeExome.RP-1303.bam 40931090743 BAM submitted_aligned CPTAC3 2835a47e-cb66-4459-bf94-048cc8301ca6 036c35ad7a83c0dd214e1ddf6d255420 {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01808.WXS.N.hg38 C3N-01808 CCRCC WXS blood_normal CPT0091340002 b8024433-4467-4772-861e-9dc4b6d0d3a1_wxs_gdc_realn.bam 55462225368 BAM harmonized CPTAC3 00125612-8710-47a3-9562-9d0e9cfbd639 f08c8a6d33f637231ae04b481e278c21 {"aliquot_tag": "ALQ_3ce5fa10", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01808.WXS.T C3N-01808 CCRCC WXS tumor CPT0089460009 CPT0089460009.WholeExome.RP-1303.bam 30949762191 BAM submitted_aligned CPTAC3 e896140c-6495-4150-89d7-51e0e4905821 a7212d6b758fff5f3aa37d2991191b60 {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01808.WXS.T.hg38 C3N-01808 CCRCC WXS tumor CPT0089460009 875e2aa1-2d48-43e0-ab93-f937b70b80da_wxs_gdc_realn.bam 42293987438 BAM harmonized CPTAC3 13087886-a551-4b88-b1be-ccefdd9151f9 5b85c65898ba2920112f06d63566a55b {"aliquot_tag": "ALQ_33b70eb9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.MethArray.Green.T C3N-01814 GBM Methylation_Array tumor CPT0167860007 203027390049_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 df78afa0-d612-47d7-a2a7-f8bb314c5ce2 b12d8ab035e9376773aac3e93f3787e7 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.MethArray.Red.T C3N-01814 GBM Methylation_Array tumor CPT0167860007 203027390049_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b8633329-0d09-4a12-99e0-a3520295059b 82794d1fb63562929a6fc018883fcae2 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.miRNA-Seq.S12_L001_R1.T C3N-01814 GBM miRNA-Seq tumor CPT0167860010 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L001_R1_001.unaln.bam 202356121 BAM S12_L001_R1 submitted_unaligned CPTAC3 a3a72840-c189-494e-a37d-ce09628f1499 ceba7da0290afa332b9d5f37442716fe {"aliquot_tag": "ALQ_767c3a0b", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.miRNA-Seq.T.hg38 C3N-01814 GBM miRNA-Seq tumor CPT0167860010 acccee8e-c693-4054-a8cf-2d1d7044d36d_mirnaseq_gdc_realn.bam 223809970 BAM harmonized CPTAC3 1149da74-6730-4e2c-8e37-183e4f5ecf34 0df23abd09917e72dffc65244f55d540 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.RNA-Seq.chimeric.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.chimeric.gdc_realn.bam 35034193 BAM chimeric harmonized CPTAC3 5b155227-739c-48e7-baa8-d37b1ededead ffaf63bdb1cfbb9fb00edf0fc62017e5 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.RNA-Seq.genomic.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.genomic.gdc_realn.bam 6783070433 BAM genomic harmonized CPTAC3 e4d8bd43-301a-43e7-bdcf-e596a5cdd77a 1132bff343769a6d1c3d68733dca2776 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.RNA-Seq.S12_L003_R1.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3257766189 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 6e1afdd8-fa3d-4cd2-a8f9-1b1206045082 378bdc0f33fd7bba82c5857939f8ad51 {"aliquot_tag": "ALQ_767c3a0b", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.RNA-Seq.S12_L003_R2.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 3528721336 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 bf1337a9-d5ba-4ed0-a2d3-851e9dd52394 47a1fffa4f8a5fd01d7bc50cc619c458 {"aliquot_tag": "ALQ_767c3a0b", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.RNA-Seq.transcriptome.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.transcriptome.gdc_realn.bam 8974684972 BAM transcriptome harmonized CPTAC3 d5e89aea-2168-4690-8f83-cab477e46527 8389136677e3a76885d031f844e39643 {"aliquot_tag": "ALQ_767c3a0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.scRNA-Seq.S6_L003_R1.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R1_001.fastq.gz 14858049776 FASTQ S6_L003_R1 submitted_unaligned CPTAC3 763a1b3e-68a5-4e4e-819a-aba30874cafc 1660259f8d5517f534bfc08e4167922e {"aliquot_tag": "ALQ_616ce84", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.scRNA-Seq.S6_L003_R2.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R2_001.fastq.gz 36982151357 FASTQ S6_L003_R2 submitted_unaligned CPTAC3 ae555dfa-4a64-4170-a34f-3c6bf957775f 1be8e5e5a873a307ff11e6375561672e {"aliquot_tag": "ALQ_616ce84", "sample": "S6", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.scRNA-Seq.T.hg38 C3N-01814 GBM scRNA-Seq tumor CPT0167860015 possorted_genome_bam.bam 44015806134 BAM harmonized CPTAC3 9a142ba2-e139-404b-9ed2-94ee0d7ea463 f3b13bc4e81a4e5a7a799b6c5b703835 {"aliquot_tag": "ALQ_616ce84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.WGS.N C3N-01814 GBM WGS blood_normal CPT0167920004 CPT0167920004.WholeGenome.RP-1303.bam 53609130596 BAM submitted_aligned CPTAC3 6f71568a-9f40-4fc8-9e40-4792ea5434e4 5b641d011aed816daf49372d778c22a2 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01814.WGS.N.hg38 C3N-01814 GBM WGS blood_normal CPT0167920004 05e1c388-5dbe-44bd-8309-474ce6854f2a_wgs_gdc_realn.bam 76750989332 BAM harmonized CPTAC3 e7f7509e-0375-4e1c-a22c-b5ba92fa02cd a990577030ee889b373300ec62249a48 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01814.WGS.T C3N-01814 GBM WGS tumor CPT0167860007 CPT0167860007.WholeGenome.RP-1303.bam 58970002690 BAM submitted_aligned CPTAC3 419840c0-0d43-4a90-820d-b7fc05c71d1d dd7cca2dbb4515010651bd1abfc146d3 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.WGS.T.hg38 C3N-01814 GBM WGS tumor CPT0167860007 89c71c22-206b-4f62-b69e-093b180053e2_wgs_gdc_realn.bam 87522260665 BAM harmonized CPTAC3 50aea80d-b1ca-4f31-b402-4df5b9474d46 d87639ce83b4e548f26a203b4bc8c5dc {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.WXS.N C3N-01814 GBM WXS blood_normal CPT0167920004 CPT0167920004.WholeExome.RP-1303.bam 28538450595 BAM submitted_aligned CPTAC3 be118832-2b34-4991-bd03-a1a24f2cd429 f0e6725323638116be25754192b48148 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01814.WXS.N.hg38 C3N-01814 GBM WXS blood_normal CPT0167920004 05e1c388-5dbe-44bd-8309-474ce6854f2a_wxs_gdc_realn.bam 38311524374 BAM harmonized CPTAC3 41119aa3-8821-449a-8d0e-c8d7a80276d8 5b24045d9316af208362e87fc0c02772 {"aliquot_tag": "ALQ_56d6ba36", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01814.WXS.T C3N-01814 GBM WXS tumor CPT0167860007 CPT0167860007.WholeExome.RP-1303.bam 26372291681 BAM submitted_aligned CPTAC3 e2f9f2af-b739-4b51-8f47-8ccb0469ebf3 cbf3dc2a7ad639c263b1b735ed06b4a3 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01814.WXS.T.hg38 C3N-01814 GBM WXS tumor CPT0167860007 89c71c22-206b-4f62-b69e-093b180053e2_wxs_gdc_realn.bam 35667880000 BAM harmonized CPTAC3 e0007fe8-51f4-4f7c-a65a-fbd85b670916 c4f33a5f99df49839271a0969fa1e975 {"aliquot_tag": "ALQ_f1039ee9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.MethArray.Green.T C3N-01815 GBM Methylation_Array tumor CPT0167970006 203027390120_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d4efa719-14e2-47af-b00c-f6ffa4e946f4 49c11854f5899c905b61c0f30826b501 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.MethArray.Red.T C3N-01815 GBM Methylation_Array tumor CPT0167970006 203027390120_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 81a2a3a8-531c-49a6-86df-ef5cd3436adc e9203dc4c0dfe9778c107feb5a1d68cf {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.miRNA-Seq.S13_L001_R1.T C3N-01815 GBM miRNA-Seq tumor CPT0167970009 181119_UNC31-K00269_0165_AH27WCBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 290368226 BAM S13_L001_R1 submitted_unaligned CPTAC3 0cbed0e7-f4a5-4fed-b366-ab98cc25fd85 9e2b16e46848b9fddb4190903511c415 {"aliquot_tag": "ALQ_e08749fb", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.miRNA-Seq.T.hg38 C3N-01815 GBM miRNA-Seq tumor CPT0167970009 d3c083c4-a134-4fa7-9f8d-3d5219c3e837_mirnaseq_gdc_realn.bam 319369751 BAM harmonized CPTAC3 a6697001-3536-43e1-9960-8d1a25d81459 7d8ae2fb0ec3f3a13366d28960ce2bb0 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.RNA-Seq.chimeric.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.chimeric.gdc_realn.bam 31112716 BAM chimeric harmonized CPTAC3 a7808f2a-a56c-4cd9-a9b0-c59ce0841549 b3d17ba9c37a0cf7d9e9acb7f282aa97 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.RNA-Seq.genomic.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.genomic.gdc_realn.bam 9660512804 BAM genomic harmonized CPTAC3 74529f5d-f7e6-436f-b70e-ae79299a619c d6842f1c8fb277b8e115c25446283aa3 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.RNA-Seq.S5_L002_R1.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 4365117694 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 44da4b86-b09e-49fc-a36a-e2651a289532 1e300e73fa80c169718ca131840631c0 {"aliquot_tag": "ALQ_e08749fb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.RNA-Seq.S5_L002_R2.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4718126134 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 4e0cc165-8e13-4d78-949d-51cd14172790 5efcd418ae3463e36da2160c58462b90 {"aliquot_tag": "ALQ_e08749fb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.RNA-Seq.transcriptome.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.transcriptome.gdc_realn.bam 12245008309 BAM transcriptome harmonized CPTAC3 89cf69bb-c697-410f-9533-2f5d10c77e04 1efd5232c1864820f952c509a4dd60b1 {"aliquot_tag": "ALQ_e08749fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.scRNA-Seq.S1_L003_R1.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R1_001.fastq.gz 11428500305 FASTQ S1_L003_R1 submitted_unaligned CPTAC3 b74fa3fd-3586-4a83-8fde-e4501100df58 1abfbe08aa8a7dfe2991a264f8a37bb3 {"aliquot_tag": "ALQ_872d0407", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.scRNA-Seq.S1_L003_R2.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R2_001.fastq.gz 27122742441 FASTQ S1_L003_R2 submitted_unaligned CPTAC3 19bf5a8b-a0e8-4b5e-8d97-8f221f992be2 a1a1da8461c5793b0e39873bb669ba3b {"aliquot_tag": "ALQ_872d0407", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.scRNA-Seq.T.hg38 C3N-01815 GBM scRNA-Seq tumor CPT0167970014 possorted_genome_bam.bam 31798102492 BAM harmonized CPTAC3 97a21536-05ef-4299-a499-6ebe3b549d7e be0cb592ec948f3f2af87a839258f967 {"aliquot_tag": "ALQ_872d0407", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.WGS.N C3N-01815 GBM WGS blood_normal CPT0168030004 CPT0168030004.WholeGenome.RP-1303.bam 58495170426 BAM submitted_aligned CPTAC3 ef61a326-08b5-435b-b40f-6d5b25c5fd95 05699362dfd59f8dd50171b5c89bb379 {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01815.WGS.N.hg38 C3N-01815 GBM WGS blood_normal CPT0168030004 f3005199-2091-4c0e-9eb7-003fc235563b_wgs_gdc_realn.bam 85488812992 BAM harmonized CPTAC3 3871bd67-8f7f-4779-836f-244104dcfd7d 002b0d8eb80aa96fba51a95c9020602b {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01815.WGS.T C3N-01815 GBM WGS tumor CPT0167970006 CPT0167970006.WholeGenome.RP-1303.bam 55488853216 BAM submitted_aligned CPTAC3 1674650c-f516-4593-bb34-f6c363e3ee5c bc78611fe2b456eb6998078d38688584 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.WGS.T.hg38 C3N-01815 GBM WGS tumor CPT0167970006 25a378f9-10f1-4864-b062-ef5d66d0c06b_wgs_gdc_realn.bam 82315464227 BAM harmonized CPTAC3 d597492d-0529-40e6-8ab6-b1899eca94c0 cfdb1dd4cf5273d643e15dab8c59628d {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.WXS.N C3N-01815 GBM WXS blood_normal CPT0168030004 CPT0168030004.WholeExome.RP-1303.bam 37714522298 BAM submitted_aligned CPTAC3 851ff1e7-7d35-42e3-a003-943009dae111 83d77fbaed544b38e4df8029af699e27 {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01815.WXS.N.hg38 C3N-01815 GBM WXS blood_normal CPT0168030004 f3005199-2091-4c0e-9eb7-003fc235563b_wxs_gdc_realn.bam 51028722153 BAM harmonized CPTAC3 1ac9f6d8-2696-4806-9ea8-d29406975657 1f59087c609da6d00785853dda4f9f68 {"aliquot_tag": "ALQ_baf1b2a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01815.WXS.T C3N-01815 GBM WXS tumor CPT0167970006 CPT0167970006.WholeExome.RP-1303.bam 29110103979 BAM submitted_aligned CPTAC3 1bcbab3b-580a-4faa-b109-c8da4c317c91 b77c33cd1ab1ce3c53e7c650ff591be5 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01815.WXS.T.hg38 C3N-01815 GBM WXS tumor CPT0167970006 25a378f9-10f1-4864-b062-ef5d66d0c06b_wxs_gdc_realn.bam 38910025670 BAM harmonized CPTAC3 33c9cd29-c40e-4d55-bb57-6c365a2ca5c9 54ff2d1352efe62f24fd689c2fb0e2d2 {"aliquot_tag": "ALQ_7038546a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.MethArray.Green.T C3N-01816 GBM Methylation_Array tumor CPT0168080006 203027390091_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b32585b6-782f-4d9e-95af-380225c17b0f 15f845e0de8b4541bf1210297205a1d0 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.MethArray.Red.T C3N-01816 GBM Methylation_Array tumor CPT0168080006 203027390091_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8f5f006b-b281-4619-b1ec-8b08e1402c45 02b7993cab3f6fe7190d8d8244e04834 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.miRNA-Seq.S14_L001_R1.T C3N-01816 GBM miRNA-Seq tumor CPT0168080009 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 197541354 BAM S14_L001_R1 submitted_unaligned CPTAC3 e3677e53-b4f1-4048-bdbc-a3e41dcbcde4 1c940f78b7f149bbfedf70fd9ecc1397 {"aliquot_tag": "ALQ_b390ff0b", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.miRNA-Seq.T.hg38 C3N-01816 GBM miRNA-Seq tumor CPT0168080009 394cad9e-041f-412a-92d1-e0141e3ebca3_mirnaseq_gdc_realn.bam 215575648 BAM harmonized CPTAC3 105ccb4b-9176-4ed9-bbf6-018ad0b2f759 8fc3dc8b2a8de6c46a5ace8a96b77ae5 {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.RNA-Seq.chimeric.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.chimeric.gdc_realn.bam 29175824 BAM chimeric harmonized CPTAC3 2d3fd6a8-a502-4702-a5ac-cdc571a266ff 95340004fc903e99606295ede22e8544 {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.RNA-Seq.genomic.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.genomic.gdc_realn.bam 9014057387 BAM genomic harmonized CPTAC3 c578577f-6f18-48a7-b092-00d76bedaa50 816a5e12fb2ff18a2ef08bb2bae86acd {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.RNA-Seq.S6_L002_R1.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4266443871 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 d4c2e7c6-bb6b-485e-8d1e-08fe07af549c 63014661469f791d6d34f8d928c76dcc {"aliquot_tag": "ALQ_b390ff0b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.RNA-Seq.S6_L002_R2.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4629196221 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 c37234b3-f608-4174-a9fd-a03511073262 11f74064b03ae68a012ee822f02eae39 {"aliquot_tag": "ALQ_b390ff0b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.RNA-Seq.transcriptome.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.transcriptome.gdc_realn.bam 12961390945 BAM transcriptome harmonized CPTAC3 54f71eca-5f00-4290-8cc2-0ce2df637b7b 4a9a7c415d7fba7bbfc6223fe8ad1e4c {"aliquot_tag": "ALQ_b390ff0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.scRNA-Seq.S1_L003_R1.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R1_001.fastq.gz 9910411370 FASTQ S1_L003_R1 submitted_unaligned CPTAC3 29127cc1-d844-4345-9bf5-d1844e1c2c70 afd2e3f2bd7f203ae697f374657c61ad {"aliquot_tag": "ALQ_d43ab2f7", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.scRNA-Seq.S1_L003_R2.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R2_001.fastq.gz 24642737722 FASTQ S1_L003_R2 submitted_unaligned CPTAC3 a4e613cb-85fc-4ecc-8f13-af9809e13f88 6434cd1f75bb00d9adc103d303e770b8 {"aliquot_tag": "ALQ_d43ab2f7", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.scRNA-Seq.T.hg38 C3N-01816 GBM scRNA-Seq tumor CPT0168080014 possorted_genome_bam.bam 30045096155 BAM harmonized CPTAC3 779821e7-a1f6-4d1f-8ced-b9e338552da3 ef3503a94ea6bc5d6d51235dec8e9b05 {"aliquot_tag": "ALQ_d43ab2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.WGS.N C3N-01816 GBM WGS blood_normal CPT0168120002 CPT0168120002.WholeGenome.RP-1303.bam 62511736580 BAM submitted_aligned CPTAC3 0301404e-c1d2-44f0-a649-ae43d93119e1 1295d8161fb2e1d42a380d0278fb30d7 {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01816.WGS.N.hg38 C3N-01816 GBM WGS blood_normal CPT0168120002 0582feca-5f76-4ca8-99a1-2183174f62a9_wgs_gdc_realn.bam 91027023070 BAM harmonized CPTAC3 96df1f35-0652-480a-90cf-9b4e184b5fa3 ca391ba69c0b6ef9b2169aacb744b1cb {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01816.WGS.T C3N-01816 GBM WGS tumor CPT0168080006 CPT0168080006.WholeGenome.RP-1303.bam 56381322083 BAM submitted_aligned CPTAC3 c33aa02f-33e0-45db-97a8-85b741b55b51 98494c91c4d5ca839546005311c2ffb4 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.WGS.T.hg38 C3N-01816 GBM WGS tumor CPT0168080006 1ecfbcc3-a1a0-43e6-aa4f-97bd311b794a_wgs_gdc_realn.bam 81855660238 BAM harmonized CPTAC3 69488b60-9ff2-4702-bc91-b13dea8a99c4 e0ee6c32fddbece99ba50588a9cdfd0e {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.WXS.N C3N-01816 GBM WXS blood_normal CPT0168120002 CPT0168120002.WholeExome.RP-1303.bam 27771808577 BAM submitted_aligned CPTAC3 90aa4b6b-d831-44b7-9718-ccd6db62b930 d917d2ae25daeaa13f93cf1acaaa6a54 {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01816.WXS.N.hg38 C3N-01816 GBM WXS blood_normal CPT0168120002 0582feca-5f76-4ca8-99a1-2183174f62a9_wxs_gdc_realn.bam 38245434442 BAM harmonized CPTAC3 8e45b01f-e38d-4f18-8795-d8b6a96135d9 a8004bfd8aadd740ac5d257e6e36f8ec {"aliquot_tag": "ALQ_a5aeed87", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01816.WXS.T C3N-01816 GBM WXS tumor CPT0168080006 CPT0168080006.WholeExome.RP-1303.bam 21121946020 BAM submitted_aligned CPTAC3 db517266-de6d-4709-924d-0fe55c20fdcc 143bfc03839f0298dc84ff81be61284a {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01816.WXS.T.hg38 C3N-01816 GBM WXS tumor CPT0168080006 1ecfbcc3-a1a0-43e6-aa4f-97bd311b794a_wxs_gdc_realn.bam 28721040012 BAM harmonized CPTAC3 198d89fa-8356-4272-a437-9e84a05200ad eb8a4c7cefb19085d2f1943b532ef6d2 {"aliquot_tag": "ALQ_232fe29a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.MethArray.Green.T C3N-01818 GBM Methylation_Array tumor CPT0168270006 203027380028_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 a452c7cf-ae53-45df-a69c-e309e13ffcbc 14b3ea3537333a9e8a5ead6b95b4dcc6 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.MethArray.Red.T C3N-01818 GBM Methylation_Array tumor CPT0168270006 203027380028_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 fc76c7f3-367c-4090-8a75-cf97e6ebe91a c81e24795ee34e576de1abae7aac0ea5 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.miRNA-Seq.S16_L001_R1.T C3N-01818 GBM miRNA-Seq tumor CPT0168270009 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 158294814 BAM S16_L001_R1 submitted_unaligned CPTAC3 6fa3e85c-336a-4f18-9664-d70307d7e95e 77fb240e79cd97e9cda2fa29631dfd79 {"aliquot_tag": "ALQ_7c08c9d1", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.miRNA-Seq.T.hg38 C3N-01818 GBM miRNA-Seq tumor CPT0168270009 ab508430-747f-415e-b88b-f16c15b8cf34_mirnaseq_gdc_realn.bam 178307549 BAM harmonized CPTAC3 86de9b06-e632-4289-8bc9-da931ec12172 570ee27c5db9a4868fd206b4aea6e53a {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.RNA-Seq.chimeric.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.chimeric.gdc_realn.bam 28862010 BAM chimeric harmonized CPTAC3 bfb3ad39-3058-4efe-96be-bf3537da36a6 4689bd55829033af91c9e3bf45602aac {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.RNA-Seq.genomic.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.genomic.gdc_realn.bam 7548885177 BAM genomic harmonized CPTAC3 b30b0ae8-48bf-4a91-81bf-dfb300f064bc 2190e1d6aa2e7fab2cf04d96bafaf27d {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.RNA-Seq.S7_L002_R1.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3317624857 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 b0e38c05-ac09-4c1c-bb1d-b548599b093b 5870a6a75630d031833ec7ecd6546669 {"aliquot_tag": "ALQ_7c08c9d1", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.RNA-Seq.S7_L002_R2.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3421335754 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 71ab0297-dec9-45f2-a48a-37d19aa41426 d78e787d39da177126fdd68bd303e584 {"aliquot_tag": "ALQ_7c08c9d1", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.RNA-Seq.transcriptome.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.transcriptome.gdc_realn.bam 10323609348 BAM transcriptome harmonized CPTAC3 f94ae69a-d34e-4f2a-a5a7-3263ae2e7f51 c55f76c592897f82ce33be7d43c8e2ae {"aliquot_tag": "ALQ_7c08c9d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.WGS.N C3N-01818 GBM WGS blood_normal CPT0168320002 CPT0168320002.WholeGenome.RP-1303.bam 58347178726 BAM submitted_aligned CPTAC3 42569fa7-e7fe-4002-bd5f-9ed5af859700 8bacd5c98dd00e8df015d6a3d4375204 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01818.WGS.N.hg38 C3N-01818 GBM WGS blood_normal CPT0168320002 bd504223-27b1-4c70-af68-6985b7e5d23b_wgs_gdc_realn.bam 85455169092 BAM harmonized CPTAC3 177f02b8-d8fc-4da9-9619-411582a25cd7 286b6bf1205fdecd9ec023c6589f87d3 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01818.WGS.T C3N-01818 GBM WGS tumor CPT0168270006 CPT0168270006.WholeGenome.RP-1303.bam 62851912865 BAM submitted_aligned CPTAC3 50e010ce-650a-4c51-98bc-c3e971461052 ac4b1a72feafe236d74b7f65a14751e1 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.WGS.T.hg38 C3N-01818 GBM WGS tumor CPT0168270006 f9340864-be80-405e-a3a3-e0b123762976_wgs_gdc_realn.bam 91961216211 BAM harmonized CPTAC3 22e2c641-d4cd-46cf-ab29-697cad876617 c7f4090390e1f9655e8f71da3d7a0ce1 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.WXS.N C3N-01818 GBM WXS blood_normal CPT0168320002 CPT0168320002.WholeExome.RP-1303.bam 36243803797 BAM submitted_aligned CPTAC3 b413e7e4-1cf8-4c32-84fc-d770caaa046b c8f0eee11654d07b5df900bf2d833352 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01818.WXS.N.hg38 C3N-01818 GBM WXS blood_normal CPT0168320002 bd504223-27b1-4c70-af68-6985b7e5d23b_wxs_gdc_realn.bam 48343240872 BAM harmonized CPTAC3 f233f5da-c7e9-45e8-9c93-bd18b618d4b9 24627a93091899749976428980e36982 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01818.WXS.T C3N-01818 GBM WXS tumor CPT0168270006 CPT0168270006.WholeExome.RP-1303.bam 31671952321 BAM submitted_aligned CPTAC3 f14f1716-e463-4ca3-99ec-e3f2bef9c83f c6023b74eefda700bb08b3426a254c7e {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01818.WXS.T.hg38 C3N-01818 GBM WXS tumor CPT0168270006 f9340864-be80-405e-a3a3-e0b123762976_wxs_gdc_realn.bam 42399077248 BAM harmonized CPTAC3 4da3c9fd-7357-4d0f-8d0c-10c9e67f06fc 1418d6dc5ebae3cb6f766ad5ea26e1a9 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.DUP_dd07c2ca.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM submitted_aligned CPTAC3 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01823.DUP_dd07c2ca.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM harmonized CPTAC3 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01823.MethArray.Green.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 509ee701-0c21-43df-91ae-639f9ac26949 83f25435b7efbfe27f65bc68ce1add51 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.MethArray.Green.T C3N-01823 LUAD Methylation_Array tumor CPT0097580009 202234380099_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a9d223e8-ecf4-4224-ada9-b997b22d90cd eafe63ef2855149f2a321b787bcec04a {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.MethArray.Red.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 1d79c083-5d16-4660-8b42-091f086f9305 a0a890e789eed03f20b940d6e9ac679c {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.MethArray.Red.T C3N-01823 LUAD Methylation_Array tumor CPT0097580009 202234380099_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 caecdc03-3349-4043-83db-b70e4978aedb ea10dad289292ed9bdf36aef0fc5a672 {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.miRNA-Seq.A.hg38 C3N-01823 LUAD miRNA-Seq tissue_normal CPT0097600006 9d93104b-90cc-4e89-8495-a8303d48ee61_mirnaseq_gdc_realn.bam 261148267 BAM harmonized CPTAC3 13d8de10-6beb-443f-8e38-dcab74fcf076 e61148cf388ee295e7db45a43a8209eb {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.miRNA-Seq.S27_L007_R1.T C3N-01823 LUAD miRNA-Seq tumor CPT0097580006 181108_UNC31-K00269_0163_BH23TVBBXY_ATTCCT_S27_L007_R1_001.unaln.bam 181145635 BAM S27_L007_R1 submitted_unaligned CPTAC3 44c44219-369c-443b-a622-e0ca20b49492 c112d2fda9c8ae369d01523e18abad55 {"aliquot_tag": "ALQ_4bf1052f", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.miRNA-Seq.S33_L008_R1.A C3N-01823 LUAD miRNA-Seq tissue_normal CPT0097600006 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L008_R1_001.unaln.bam 240001101 BAM S33_L008_R1 submitted_unaligned CPTAC3 df22e3f2-b957-4266-9dbd-f422404ed092 a499bc639f0533250506a4af3e425b87 {"aliquot_tag": "ALQ_fd153c40", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.miRNA-Seq.T.hg38 C3N-01823 LUAD miRNA-Seq tumor CPT0097580006 374db546-5748-4389-89f6-8f9d15e9db64_mirnaseq_gdc_realn.bam 195280826 BAM harmonized CPTAC3 b11966fa-5430-4256-9399-40b2e01ba84f 4b1739f1a8c20be6bf7a75aebbd99717 {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.RNA-Seq.chimeric.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.chimeric.gdc_realn.bam 53168861 BAM chimeric harmonized CPTAC3 7ca06133-108d-45c0-8b0c-851307c6a56f 40213ed797ed03985b7bb85c22a54400 {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.RNA-Seq.chimeric.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.chimeric.gdc_realn.bam 85947326 BAM chimeric harmonized CPTAC3 fd50171e-9172-4a8c-8b79-dcc5198d9480 f3469bde8f6c8534243567486c9d9d1d {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.RNA-Seq.genomic.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.genomic.gdc_realn.bam 7170292717 BAM genomic harmonized CPTAC3 ff1ee818-3c64-49aa-bfdc-6cfafa2860a2 06d5ffaf777a149899623e433877a4be {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.RNA-Seq.genomic.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.genomic.gdc_realn.bam 10559177157 BAM genomic harmonized CPTAC3 35ee6f05-409f-4b1f-a0ce-714856c5ed61 49da90a24dcea13eb14bbc26a7fd0565 {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.RNA-Seq.S2_L001_R1.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R1_001.fastq.gz 3258528387 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 a3a8c329-94a6-46c4-8fc3-a1cea064d903 49f7d6dff89b9368d2b3fb4e13524397 {"aliquot_tag": "ALQ_fd153c40", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.RNA-Seq.S2_L001_R2.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R2_001.fastq.gz 3613132571 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 7973b618-d910-42da-9305-4c328f719b2e 036e16a07ad829442a0d4fa91a81a453 {"aliquot_tag": "ALQ_fd153c40", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.RNA-Seq.S55_L006_R1.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R1_001.fastq.gz 4598764700 FASTQ S55_L006_R1 submitted_unaligned CPTAC3 5b45d19d-bdea-4e24-a7d7-7295f8f0781a 4a1f6f912d19519b15052b7d369eb2d2 {"aliquot_tag": "ALQ_4bf1052f", "sample": "S55", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.RNA-Seq.S55_L006_R2.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R2_001.fastq.gz 5141440090 FASTQ S55_L006_R2 submitted_unaligned CPTAC3 66f370eb-13cf-488f-b531-111714b86e96 9ece3c7276c5c49e23aa93f8538aa8d3 {"aliquot_tag": "ALQ_4bf1052f", "sample": "S55", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.RNA-Seq.transcriptome.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.transcriptome.gdc_realn.bam 8344124206 BAM transcriptome harmonized CPTAC3 46fdd4bc-8bc1-4882-bc11-7cab58b1fd55 7eee298132b3b635ce4829b132423d5f {"aliquot_tag": "ALQ_fd153c40", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.RNA-Seq.transcriptome.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.transcriptome.gdc_realn.bam 11363680450 BAM transcriptome harmonized CPTAC3 cf80a919-2ab1-4d84-a3a3-15b9dba1c393 9ead23749bb0542fb7e0a5d001379612 {"aliquot_tag": "ALQ_4bf1052f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.WGS.A C3N-01823 LUAD WGS tissue_normal CPT0097600009 CPT0097600009.WholeGenome.RP-1303.bam 62078209737 BAM submitted_aligned CPTAC3 2852fc32-95fc-4262-9587-4964a971024c c8e9e9ffd1c7981d7b62f54d08d5af83 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.WGS.A.hg38 C3N-01823 LUAD WGS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wgs_gdc_realn.bam 91356898324 BAM harmonized CPTAC3 43e69023-7983-4e5d-b4aa-a5d3173681a6 730306133cbf8d474cdad4592a0361af {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.WGS.N C3N-01823 LUAD WGS blood_normal CPT0097610002 CPT0097610002.WholeGenome.RP-1303.bam 61052134386 BAM submitted_aligned CPTAC3 5c696797-28f6-416a-b769-967313645a8e 0b86cdcd69fea5c76e2b064f51b5dc1b {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01823.WGS.N.hg38 C3N-01823 LUAD WGS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wgs_gdc_realn.bam 89541195809 BAM harmonized CPTAC3 59fd9c47-a049-4483-90bf-3650711651ee 1d83c76bafae811ea4b81e87b3a0edb3 {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01823.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009 CPT0097580009.WholeGenome.RP-1303.bam 65656450281 BAM submitted_aligned CPTAC3 c85d58e0-c631-494c-bd98-314a1dc8134e 66c86771c4dc933a8d6bc193c02d6d63 {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wgs_gdc_realn.bam 96055710690 BAM harmonized CPTAC3 cfcf2f7b-9f70-47a0-a2f0-d864ba6326ad ff311311a00abf25d13ba1cd79fd3578 {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.WXS.A C3N-01823 LUAD WXS tissue_normal CPT0097600009 CPT0097600009.WholeExome.RP-1303.bam 34217317088 BAM submitted_aligned CPTAC3 771f8925-7283-4736-8e3e-f126c481e2f1 82c84f0a3406f45f76094bb7708a5972 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.WXS.A.hg38 C3N-01823 LUAD WXS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wxs_gdc_realn.bam 46062396631 BAM harmonized CPTAC3 ae1ed438-07f1-44aa-9690-121cfdb635e9 e8d141483f556977231f0e4be01c39eb {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01823.WXS.N C3N-01823 LUAD WXS blood_normal CPT0097610002 CPT0097610002.WholeExome.RP-1303.bam 26376253830 BAM submitted_aligned CPTAC3 9609fe2a-7678-4fb7-aed1-37decce3b4a1 662777ce742428bf53774cd84174dcb2 {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01823.WXS.N.hg38 C3N-01823 LUAD WXS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wxs_gdc_realn.bam 35435908121 BAM harmonized CPTAC3 a59668f0-be1f-4eef-ac04-16e2a8d48d5f b0b049ff7b05bb08e037ba1e8ab596d7 {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01823.WXS.T C3N-01823 LUAD WXS tumor CPT0097580009 CPT0097580009.WholeExome.RP-1303.bam 44032320229 BAM submitted_aligned CPTAC3 3b24fc5b-267c-48ef-a8aa-6454383c5510 2e674956e05723940af2db20f3b1c9ac {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01823.WXS.T.hg38 C3N-01823 LUAD WXS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wxs_gdc_realn.bam 59887110671 BAM harmonized CPTAC3 4041925d-db9d-4daf-85da-8170f8864174 7ec0c47e58d8ac0693252094d54e780b {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.MethArray.Green.T C3N-01825 UCEC Methylation_Array tumor CPT0097710009 202234380054_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b1b2e295-1918-4f45-8012-ca9b86c0e45f 03480cbaeb97b5025bb43ec77619e41c {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.MethArray.Red.T C3N-01825 UCEC Methylation_Array tumor CPT0097710009 202234380054_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 d6efa57b-46aa-4fd0-a252-7c2613c4fb2c 88dcdde8b18fd7c4a724f19873906457 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_71e99535.MethArray.Green.T C3N-01825 UCEC Methylation_Array tumor CPT0097730006 203027390034_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 75510140-ddf8-4f9d-9fc2-fed1fc4664ef f10207e7dec6315edfacfb80a40414eb {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_71e99535.MethArray.Red.T C3N-01825 UCEC Methylation_Array tumor CPT0097730006 203027390034_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 e7e485e4-b7c8-439d-bcc1-e3e63535fbcd f7f118372edd06a0886f984b78c778ca {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_71e99535.WGS.T C3N-01825 UCEC WGS tumor CPT0097730006 CPT0097730006.WholeGenome.RP-1303.bam 59800912456 BAM submitted_aligned CPTAC3 c50da7a7-d110-4849-973a-5e9bc8e323eb 026515590459a4293d1d1c4171a647a9 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_71e99535.WGS.T.hg38 C3N-01825 UCEC WGS tumor CPT0097730006 42791ee5-99f8-4230-940c-d17609188034_wgs_gdc_realn.bam 86915536728 BAM harmonized CPTAC3 45a82c6e-c6d4-4716-9626-01ddb64f0b4e 40543ab128c453ca527865e13d13a1e1 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_71e99535.WXS.T C3N-01825 UCEC WXS tumor CPT0097730006 CPT0097730006.WholeExome.RP-1303.bam 20447493334 BAM submitted_aligned CPTAC3 34ec2553-a029-4ee3-9f97-7e2472d7e622 9227527140db19429294e5b9b17e15a3 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_71e99535.WXS.T.hg38 C3N-01825 UCEC WXS tumor CPT0097730006 42791ee5-99f8-4230-940c-d17609188034_wxs_gdc_realn.bam 28245493993 BAM harmonized CPTAC3 d84c30fd-5552-408c-9f32-7fafcfd95b50 5375bee58b296f7debc10f99602037d7 {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_e15688a4.miRNA-Seq.S5_L005_R1.T C3N-01825 UCEC miRNA-Seq tumor CPT0097730009 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L005_R1_001.unaln.bam 297846600 BAM S5_L005_R1 submitted_unaligned CPTAC3 f5b7ec01-eefb-43ad-95ee-7f4d42b8e34d 0c29d24ae4b92b7dca543b8d0140fd0f {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_e15688a4.miRNA-Seq.T.hg38 C3N-01825 UCEC miRNA-Seq tumor CPT0097730009 2f0a37e7-e5bf-4bc7-a449-3d9c21031b2e_mirnaseq_gdc_realn.bam 335008133 BAM harmonized CPTAC3 e07156c8-18ac-46d7-a551-40d8f4958b74 7fde5dc2e30634b5629191f8abeed1d9 {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_e15688a4.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.chimeric.gdc_realn.bam 36344490 BAM chimeric harmonized CPTAC3 b2add081-ab67-4af6-89b5-ff7d86fd19d2 aca5924f28efba87bc9ec924e657e13b {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_e15688a4.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.genomic.gdc_realn.bam 8969946155 BAM genomic harmonized CPTAC3 c7e55e3b-2fb9-4e18-bb4d-76b8b4791321 6c371b3e3c2ed8fee8497361d05ec28a {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_e15688a4.RNA-Seq.S28_L008_R1.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R1_001.fastq.gz 4016926868 FASTQ S28_L008_R1 submitted_unaligned CPTAC3 419d417d-b526-4604-99d8-dcda3c1e04a2 8c7c0f5aea734bfd8a90784074253913 {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S28", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_e15688a4.RNA-Seq.S28_L008_R2.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R2_001.fastq.gz 4314809464 FASTQ S28_L008_R2 submitted_unaligned CPTAC3 a94be969-d00d-4dc9-bbf5-202369fe602a b8a4950db0555463c9cad9112648fffb {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S28", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.REP_e15688a4.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.transcriptome.gdc_realn.bam 11689383752 BAM transcriptome harmonized CPTAC3 295123ed-5a18-4822-8380-35aec955c76f d100575d7f8020a1243dc951af5146c5 {"aliquot_tag": "REP_e15688a4", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.chimeric.gdc_realn.bam 86926400 BAM chimeric harmonized CPTAC3 d7b5179d-63cb-47f5-9dac-faf1fdbc19f1 2c4e49102d9207f148abb852cc87e379 {"aliquot_tag": "ALQ_b29c655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.chimeric.gdc_realn.bam 214221323 BAM chimeric harmonized CPTAC3 a49572ea-90c8-417a-9708-88822b8ea072 79b50fc2febb967ea808072d1eba4a9c {"aliquot_tag": "ALQ_1edbb243", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.genomic.gdc_realn.bam 7916984281 BAM genomic harmonized CPTAC3 e4740b8e-a683-40b8-9122-27a7f2b796f5 3467957b17104dc00c84102837b83034 {"aliquot_tag": "ALQ_b29c655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.genomic.gdc_realn.bam 10153785310 BAM genomic harmonized CPTAC3 c320a0a0-1eee-41a3-bb66-42795186ca4f f993d5ebb8ec457bda63fc413593e90a {"aliquot_tag": "ALQ_1edbb243", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.S56_L006_R1.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R1_001.fastq.gz 3649504839 FASTQ S56_L006_R1 submitted_unaligned CPTAC3 fb6e7290-6e05-40fd-b122-340633db8e34 6e27d7f5cc7e0be3bd7675c075ddc51d {"aliquot_tag": "ALQ_b29c655", "sample": "S56", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.S56_L006_R2.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R2_001.fastq.gz 3925202348 FASTQ S56_L006_R2 submitted_unaligned CPTAC3 ee34816a-0060-45f6-9813-334207970349 05040912ef651663e59b10e0ecd6aca5 {"aliquot_tag": "ALQ_b29c655", "sample": "S56", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.S82_R1.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R1_001.fastq.gz 5750675269 FASTQ S82_R1 submitted_unaligned CPTAC3 41b126f1-4aab-4727-b926-8ee210e768a3 c75eca488a4eec8091d0a7084ca3981b {"aliquot_tag": "ALQ_1edbb243", "sample": "S82", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.S82_R2.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R2_001.fastq.gz 5917648328 FASTQ S82_R2 submitted_unaligned CPTAC3 bec325d5-9452-49c8-8ef4-b389a4bee8a3 b047f9e9a7a1679aec6900e240aada0a {"aliquot_tag": "ALQ_1edbb243", "sample": "S82", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.transcriptome.gdc_realn.bam 7595758212 BAM transcriptome harmonized CPTAC3 398129c7-e54f-4423-b5d4-2a3dfb374ddc 2131b99aaece3db93f78043e71373477 {"aliquot_tag": "ALQ_b29c655", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.transcriptome.gdc_realn.bam 3626293454 BAM transcriptome harmonized CPTAC3 b1b1c0ad-645a-4a8f-8c33-73faa8535b9b 5aee52ecafc033188bf4c99c9c6aa06b {"aliquot_tag": "ALQ_1edbb243", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.WGS.N C3N-01825 UCEC WGS blood_normal CPT0097750002 CPT0097750002.WholeGenome.RP-1303.bam 59370925934 BAM submitted_aligned CPTAC3 37d69863-1e89-48e5-a8f8-0e6861762b99 b65210e53c1afad0f8d1d5be1f77c271 {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01825.WGS.N.hg38 C3N-01825 UCEC WGS blood_normal CPT0097750002 e85c33bd-3b8d-4bad-9735-e48f81491019_wgs_gdc_realn.bam 87791073707 BAM harmonized CPTAC3 522582a7-24d6-4b9a-9e6a-5116e3ca5c72 26eaee75872fe5c52d07a18587eb8890 {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01825.WGS.T C3N-01825 UCEC WGS tumor CPT0097710009 CPT0097710009.WholeGenome.RP-1303.bam 62049197185 BAM submitted_aligned CPTAC3 5f8d88f4-c399-41b2-9e81-2a46297a87d7 19b09eee700ee0aeeb7acdfb88d713b3 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.WGS.T.hg38 C3N-01825 UCEC WGS tumor CPT0097710009 3ec666f3-df1c-438d-bcc1-555e4c7db92b_wgs_gdc_realn.bam 88870399289 BAM harmonized CPTAC3 eb0e4fbc-5442-43f8-ae0e-4d8d6cb67f59 591d27324fd4a8989b404a1b89199d66 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.WXS.N C3N-01825 UCEC WXS blood_normal CPT0097750002 CPT0097750002.WholeExome.RP-1303.bam 37020388029 BAM submitted_aligned CPTAC3 75503034-28e8-4297-b2b3-095730e2b53a c7df3d9a16a69fdecf707ecc5888c83d {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01825.WXS.N.hg38 C3N-01825 UCEC WXS blood_normal CPT0097750002 e85c33bd-3b8d-4bad-9735-e48f81491019_wxs_gdc_realn.bam 51270405165 BAM harmonized CPTAC3 bb985682-1aad-4aa0-acd4-039b2e5f2b49 ec72014149ee477dbbb006c973f263ce {"aliquot_tag": "ALQ_f9c4a48c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01825.WXS.T C3N-01825 UCEC WXS tumor CPT0097710009 CPT0097710009.WholeExome.RP-1303.bam 51333313128 BAM submitted_aligned CPTAC3 dc05be9d-0e08-4235-87a0-f88fbf139422 d4dcfabf384812b690b34d8d066d2692 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01825.WXS.T.hg38 C3N-01825 UCEC WXS tumor CPT0097710009 3ec666f3-df1c-438d-bcc1-555e4c7db92b_wxs_gdc_realn.bam 71288873715 BAM harmonized CPTAC3 e079441f-c166-44ee-b53b-33a6f6fcff85 93ff1fdf0fb39e86a1892e1f566377ec {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.MethArray.Green.A C3N-01828 CCRCC Methylation_Array tissue_normal CPT0097880006 204930630071_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6f9d6175-f344-4c3e-938e-de25d712572a 9833018a56148108049be7e09bafdac8 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.MethArray.Green.T C3N-01828 CCRCC Methylation_Array tumor CPT0097850009 202234360009_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 eb5de2f6-7a85-457c-b52d-1f332af61c0a 4ebde2262daa0ccc02cf8f7ca25be297 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.MethArray.Red.A C3N-01828 CCRCC Methylation_Array tissue_normal CPT0097880006 204930630071_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 f499f00f-906b-4911-a876-a3af1deb91f9 b502faec3d159a9a3cb5adcc30a2782e {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.MethArray.Red.T C3N-01828 CCRCC Methylation_Array tumor CPT0097850009 202234360009_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 9776f722-5dfe-4bbe-b79d-32cb69f9793f 5fbbc6feb699f1f1eeb79c53812f8226 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.miRNA-Seq.A.hg38 C3N-01828 CCRCC miRNA-Seq tissue_normal CPT0097880009 4d774f02-cfa0-4887-bdca-a31d251c9d02_mirnaseq_gdc_realn.bam 219048131 BAM harmonized CPTAC3 210a1236-d53a-418a-9332-d9eb5345f829 0a96e067dce48e56d92ea1131e362d79 {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.miRNA-Seq.S28_L003_R1.T C3N-01828 CCRCC miRNA-Seq tumor CPT0097850006 181119_UNC31-K00269_0165_AH27WCBBXY_TGACCA_S28_L003_R1_001.unaln.bam 227721460 BAM S28_L003_R1 submitted_unaligned CPTAC3 f0828ad7-8106-4011-9db0-6973d94796a4 c19f790b709af79b3a6a7c82709a79ce {"aliquot_tag": "ALQ_fffd240", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.miRNA-Seq.S29_L002_R1.A C3N-01828 CCRCC miRNA-Seq tissue_normal CPT0097880009 181119_UNC31-K00269_0165_AH27WCBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 199593545 BAM S29_L002_R1 submitted_unaligned CPTAC3 e64106e7-60f9-4d26-bb92-f616d9dcc9ff bb79288add5de99492c35cb2c85b8a09 {"aliquot_tag": "ALQ_67d00b60", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.miRNA-Seq.T.hg38 C3N-01828 CCRCC miRNA-Seq tumor CPT0097850006 4b68c6bd-7978-4aaa-bfe6-eb65ad96f998_mirnaseq_gdc_realn.bam 252281406 BAM harmonized CPTAC3 12b5c994-b9bb-4956-9d92-c995d0f807ff 91739096731e200012d3ed86da4edb99 {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.RNA-Seq.chimeric.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.chimeric.gdc_realn.bam 27535798 BAM chimeric harmonized CPTAC3 e6d7cd01-5ccd-4e9f-b998-ecdfa40d9d36 812beee48e12be7a7ad70eaa18c22d4c {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.RNA-Seq.chimeric.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.chimeric.gdc_realn.bam 28928878 BAM chimeric harmonized CPTAC3 70dded1f-a750-48e3-9ff2-823ee7379b25 7fd2b1fbf5e0cb828a6c122cd6286f83 {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.RNA-Seq.genomic.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.genomic.gdc_realn.bam 8075345403 BAM genomic harmonized CPTAC3 4bc1eafe-cc95-4990-bc81-5b4b101cafb0 e4e6a147867be32941a2cfa712d108c2 {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.RNA-Seq.genomic.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.genomic.gdc_realn.bam 7912355784 BAM genomic harmonized CPTAC3 6a79ba55-9741-482e-9d1b-2136ae153385 d7cd5832ccb48525727a9a968e6371d7 {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.RNA-Seq.S5_L002_R1.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3314280612 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 88455df6-837c-46c9-af08-4cdb5d74b947 66958c7f3b06d5c403f3af4fe546fc4c {"aliquot_tag": "ALQ_67d00b60", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.RNA-Seq.S5_L002_R2.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R2_001.fastq.gz 3699220691 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 01bb34cf-1129-4513-ab29-bdce592de42b f6530f38080216d186534aaa43990638 {"aliquot_tag": "ALQ_67d00b60", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.RNA-Seq.S6_L008_R1.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3539841466 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 788342e9-7521-48ec-9bce-3a8c71bc6dc2 9349249ebe2c2ad97adee5db33c92850 {"aliquot_tag": "ALQ_fffd240", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.RNA-Seq.S6_L008_R2.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3939708570 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 bcf7727b-fc8e-4fbc-91ed-1f27520ea6c5 af5dda7b5c124286d8582985909f29d8 {"aliquot_tag": "ALQ_fffd240", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.RNA-Seq.transcriptome.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.transcriptome.gdc_realn.bam 8657613822 BAM transcriptome harmonized CPTAC3 41b38918-c894-4c62-8d6a-5ef45ee41099 88f26df06cfc350555c0a97f2858a132 {"aliquot_tag": "ALQ_67d00b60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.RNA-Seq.transcriptome.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.transcriptome.gdc_realn.bam 9137680251 BAM transcriptome harmonized CPTAC3 61a828ed-ab75-4345-9b7d-869ee4477701 e0456cb3f53dc5122cafb60e53f5893d {"aliquot_tag": "ALQ_fffd240", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.WGS.A C3N-01828 CCRCC WGS tissue_normal CPT0097880006 CPT0097880006.WholeGenome.RP-1303.bam 65514632647 BAM submitted_aligned CPTAC3 21051ce7-85f0-4a40-b6cd-53fbc917dd8e b34dee4907a3090b48b2eea797cdb975 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.WGS.A.hg38 C3N-01828 CCRCC WGS tissue_normal CPT0097880006 fff5df36-59bc-4e34-a194-e50179469f0b_wgs_gdc_realn.bam 96795677214 BAM harmonized CPTAC3 b1d36d7a-66ef-4209-998c-6dfa4c848a1c 7aee731da24af7c7648326c30566ceeb {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.WGS.N C3N-01828 CCRCC WGS blood_normal CPT0097890002 CPT0097890002.WholeGenome.RP-1303.bam 58935249933 BAM submitted_aligned CPTAC3 77fdbde2-092c-4e25-b7f1-2410388cb6e8 1b35654a16c5eaec7626ef721955b7e9 {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01828.WGS.N.hg38 C3N-01828 CCRCC WGS blood_normal CPT0097890002 a56edf1b-1241-456b-8142-3d9fa753b19c_wgs_gdc_realn.bam 88073602844 BAM harmonized CPTAC3 20d02643-385b-4abc-941e-7432e8e0755e 8d86c4aeb837b2aab2576be1b1265639 {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01828.WGS.T C3N-01828 CCRCC WGS tumor CPT0097850009 CPT0097850009.WholeGenome.RP-1303.bam 63562426841 BAM submitted_aligned CPTAC3 1cdcfd0b-0b2e-4ecc-ab9a-9d7b13728e16 02d8787f5babd2a2e52a677313136c90 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.WGS.T.hg38 C3N-01828 CCRCC WGS tumor CPT0097850009 5f133818-f707-4568-a7cb-294820a3a88c_wgs_gdc_realn.bam 95734481344 BAM harmonized CPTAC3 0ba5a705-ae28-4f81-bb85-d225ecb27c47 ac726aae83f89d92b42993989dda7d17 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.WXS.A C3N-01828 CCRCC WXS tissue_normal CPT0097880006 CPT0097880006.WholeExome.RP-1303.bam 21488636727 BAM submitted_aligned CPTAC3 ad9eca42-18c7-436a-bde1-6f1ec4f9e176 67993a81d3f4a5e36296e0a8553336d8 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.WXS.A.hg38 C3N-01828 CCRCC WXS tissue_normal CPT0097880006 fff5df36-59bc-4e34-a194-e50179469f0b_wxs_gdc_realn.bam 29123756129 BAM harmonized CPTAC3 07f7bd84-f1de-488b-a392-990a74dcdaf8 e06d2d25ac10473e73a8165a250eacb4 {"aliquot_tag": "ALQ_f76f16f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01828.WXS.N C3N-01828 CCRCC WXS blood_normal CPT0097890002 CPT0097890002.WholeExome.RP-1303.bam 25166119718 BAM submitted_aligned CPTAC3 c2518200-37da-404a-856e-f7022ee4faa0 11ff05142088b7422fe50ca2e108d620 {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01828.WXS.N.hg38 C3N-01828 CCRCC WXS blood_normal CPT0097890002 a56edf1b-1241-456b-8142-3d9fa753b19c_wxs_gdc_realn.bam 34563300078 BAM harmonized CPTAC3 8ec2dc96-1d51-49f3-afb1-e9e0e6659e38 d4e68613cf32e2a7ad25bc310e5bda3d {"aliquot_tag": "ALQ_cd62fb58", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01828.WXS.T C3N-01828 CCRCC WXS tumor CPT0097850009 CPT0097850009.WholeExome.RP-1303.bam 32074976794 BAM submitted_aligned CPTAC3 8e928230-86a8-4996-ad85-7ab208534490 c8b586e3a12b1aadf75b4014478b473e {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01828.WXS.T.hg38 C3N-01828 CCRCC WXS tumor CPT0097850009 5f133818-f707-4568-a7cb-294820a3a88c_wxs_gdc_realn.bam 44314221823 BAM harmonized CPTAC3 f95370e5-138f-4b67-be74-2a0e2d51138d 154d7c88b38806b0a2ffad258a15b599 {"aliquot_tag": "ALQ_9f40cfd1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01830.MethArray.Green.T C3N-01830 UCEC Methylation_Array tumor CPT0097300009 202234360028_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5eaba63a-2c53-48a5-bc3c-9701eaa0af38 76de72f3a92c52f53cdeb1a6b16c9619 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.MethArray.Red.T C3N-01830 UCEC Methylation_Array tumor CPT0097300009 202234360028_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 fedbab61-1243-49df-9b92-7c1977feabd5 5a15cb025ceaff5a7fa639cf5f3c4575 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.miRNA-Seq.A.hg38 C3N-01830 UCEC miRNA-Seq tissue_normal CPT0097320009 a0ba4db4-1765-4f08-8c7f-cfb4ec70cc8d_mirnaseq_gdc_realn.bam 318039760 BAM harmonized CPTAC3 3285ae74-9453-4473-b51b-bab502ed2ceb 40fed72a98dcb8f60bc83ef767f46cb1 {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.miRNA-Seq.S14_L005_R1.A C3N-01830 UCEC miRNA-Seq tissue_normal CPT0097320009 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L005_R1_001.unaln.bam 280859771 BAM S14_L005_R1 submitted_unaligned CPTAC3 25b793ab-6f2b-4144-ac14-6fc538b4a41d fa2f32ab62375223cbd8439c4fea7d86 {"aliquot_tag": "ALQ_47a7e302", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.miRNA-Seq.S28_L007_R1.T C3N-01830 UCEC miRNA-Seq tumor CPT0097300006 181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L007_R1_001.unaln.bam 196843215 BAM S28_L007_R1 submitted_unaligned CPTAC3 de8fd048-5653-4cca-9c22-59d99572a28f c0dd99798cb897c72bd87cb046d547ec {"aliquot_tag": "ALQ_add8adf3", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.miRNA-Seq.T.hg38 C3N-01830 UCEC miRNA-Seq tumor CPT0097300006 6eac3b83-3eb2-4f8f-83c4-4df1ca6352b3_mirnaseq_gdc_realn.bam 213660747 BAM harmonized CPTAC3 3012769f-5f2d-4091-9f36-f79a1d5f13ef 1edb0d69f3e28131d5af156610b177be {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.chimeric.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.chimeric.gdc_realn.bam 27054554 BAM chimeric harmonized CPTAC3 3e61d21b-5945-41b2-8088-a9fef2c9e4a8 033b18d60769c97207c0dc54efae407d {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.RNA-Seq.chimeric.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.chimeric.gdc_realn.bam 62322117 BAM chimeric harmonized CPTAC3 d8edad04-db4d-4810-828c-8dadb1165a31 606885f843930cd091b84b95676b107e {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.chimeric.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.chimeric.gdc_realn.bam 205674444 BAM chimeric harmonized CPTAC3 9d604e42-ee33-49a1-b4b3-da8879ca4682 09d4c50dfa9dae9b9ceac3ec147ec3ef {"aliquot_tag": "ALQ_2eb908e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.genomic.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.genomic.gdc_realn.bam 8949382912 BAM genomic harmonized CPTAC3 b2868dbf-c281-49f3-81bc-4309ed3f4b7c 4ae629aba7a4d009209bba93848bd75d {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.RNA-Seq.genomic.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.genomic.gdc_realn.bam 8206766342 BAM genomic harmonized CPTAC3 45863fa6-e4f2-47ca-adfa-43e7275614f1 fe59766e515f9b5c52a6d29b20b3bc85 {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.genomic.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.genomic.gdc_realn.bam 9748994833 BAM genomic harmonized CPTAC3 80e58bb0-466b-449d-9f37-fb4ae536140a a18810cf2d7c863267567230b2a49755 {"aliquot_tag": "ALQ_2eb908e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.S21_L006_R1.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 3639573631 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 ac9789d6-fac8-4e2e-8dd7-5607b8de5ff5 21322ab0d0e1a93e7b6271d6b3a9a880 {"aliquot_tag": "ALQ_47a7e302", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.RNA-Seq.S21_L006_R2.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 3880727184 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 19eab5b2-9e9a-4cdd-a551-c9bd2838a92c 4d848f9c5523d0d3804f7166ab4d617e {"aliquot_tag": "ALQ_47a7e302", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.RNA-Seq.S58_L006_R1.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R1_001.fastq.gz 3630395279 FASTQ S58_L006_R1 submitted_unaligned CPTAC3 aaf08754-43f6-42f6-b119-8877fb53c583 719ef8e3132b2720fb777429a0ab800c {"aliquot_tag": "ALQ_add8adf3", "sample": "S58", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.S58_L006_R2.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R2_001.fastq.gz 4068659067 FASTQ S58_L006_R2 submitted_unaligned CPTAC3 f89ea58d-d97e-43bf-8cb5-7afe7f304350 fc851670ba207e332f6dd1899a0ac8f1 {"aliquot_tag": "ALQ_add8adf3", "sample": "S58", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.S94_R1.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R1_001.fastq.gz 6033965446 FASTQ S94_R1 submitted_unaligned CPTAC3 b31b6754-5586-4cf3-85be-34e309b8a98d aee8685519dc2e68f996bcd45dadf23a {"aliquot_tag": "ALQ_2eb908e8", "sample": "S94", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.S94_R2.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R2_001.fastq.gz 6233966189 FASTQ S94_R2 submitted_unaligned CPTAC3 ebe005b3-2880-431a-ac33-a92bec12b0f4 0a7ecffa7e7f57a2030a9a4d406dcc7f {"aliquot_tag": "ALQ_2eb908e8", "sample": "S94", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.transcriptome.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.transcriptome.gdc_realn.bam 10850923251 BAM transcriptome harmonized CPTAC3 5a5e6f24-e1b6-451b-9b7e-b06468de83fa 8559c413f5198c2b9a7e664f8dffeb2b {"aliquot_tag": "ALQ_47a7e302", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.RNA-Seq.transcriptome.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.transcriptome.gdc_realn.bam 9264290669 BAM transcriptome harmonized CPTAC3 c0895164-3d63-4de0-8878-13d69b923355 3152c36fe52ef6e8fc84faf5405728ba {"aliquot_tag": "ALQ_add8adf3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.RNA-Seq.transcriptome.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.transcriptome.gdc_realn.bam 5339940710 BAM transcriptome harmonized CPTAC3 f479b50d-6505-4c5a-8728-6a4b5ab0d100 a8bf0e5deabbfd0b2216c993c150b85b {"aliquot_tag": "ALQ_2eb908e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.WGS.A C3N-01830 UCEC WGS tissue_normal CPT0097320006 CPT0097320006.WholeGenome.RP-1303.bam 61534784508 BAM submitted_aligned CPTAC3 3b610c6e-dfdd-4742-82ad-41055a4b639e bb2e55fd0156ec4f925e7a34ab53b503 {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.WGS.A.hg38 C3N-01830 UCEC WGS tissue_normal CPT0097320006 d2f91b7f-3ba9-4f92-9999-e34aaf39e8b6_wgs_gdc_realn.bam 89718257653 BAM harmonized CPTAC3 b58fd6d0-ace8-402f-962e-f88632a3b25b a12d29c7870f1682ece44dbdc2ac70d6 {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.WGS.N C3N-01830 UCEC WGS blood_normal CPT0097330002 CPT0097330002.WholeGenome.RP-1303.bam 66058617011 BAM submitted_aligned CPTAC3 bc64edb5-0091-4fcd-a5ba-85ab1638d126 97b7b7b349f9396f3661374fe600ac7c {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01830.WGS.N.hg38 C3N-01830 UCEC WGS blood_normal CPT0097330002 49c80b42-7539-4e7d-9a14-4f32f9a595e0_wgs_gdc_realn.bam 97256469793 BAM harmonized CPTAC3 b45fa8b4-1e73-4cd3-a4f5-0c82aaf1dac7 6275fd291fa80f2018aa0ec27a4d4eb9 {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01830.WGS.T C3N-01830 UCEC WGS tumor CPT0097300009 CPT0097300009.WholeGenome.RP-1303.bam 59924087607 BAM submitted_aligned CPTAC3 be29d023-65df-4356-af1f-8122a2fe8a35 fcb732c39bd09b959574f4c8a538a6bc {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.WGS.T.hg38 C3N-01830 UCEC WGS tumor CPT0097300009 7309ed28-37a6-470a-b971-4b1981c7bd9b_wgs_gdc_realn.bam 87941270170 BAM harmonized CPTAC3 4e433d06-26f9-4312-9e86-28e251bb06cf 2974f9f979103e59474310e0da56e34b {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.WXS.A C3N-01830 UCEC WXS tissue_normal CPT0097320006 CPT0097320006.WholeExome.RP-1303.bam 40880620021 BAM submitted_aligned CPTAC3 b13fb15e-700e-4996-b73f-7532f6099130 3ba83e717d5a841eb1bea41bddefde47 {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.WXS.A.hg38 C3N-01830 UCEC WXS tissue_normal CPT0097320006 d2f91b7f-3ba9-4f92-9999-e34aaf39e8b6_wxs_gdc_realn.bam 54098728240 BAM harmonized CPTAC3 0043084a-5de1-41fe-bb22-af0b2223e197 6ebbb3e5d3035dc8b8f1302bc55d847e {"aliquot_tag": "ALQ_d718fe93", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01830.WXS.N C3N-01830 UCEC WXS blood_normal CPT0097330002 CPT0097330002.WholeExome.RP-1303.bam 37538929423 BAM submitted_aligned CPTAC3 4575eb6f-2923-42a9-875a-a4830a2b1fc4 ecdc9375582004b28469a035a5c5aa42 {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01830.WXS.N.hg38 C3N-01830 UCEC WXS blood_normal CPT0097330002 49c80b42-7539-4e7d-9a14-4f32f9a595e0_wxs_gdc_realn.bam 50496991656 BAM harmonized CPTAC3 48298649-34ec-4158-80c6-76111209b23b c473cbe99422f20090cf9cde18244d40 {"aliquot_tag": "ALQ_ed15133a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01830.WXS.T C3N-01830 UCEC WXS tumor CPT0097300009 CPT0097300009.WholeExome.RP-1303.bam 27651147723 BAM submitted_aligned CPTAC3 3590afbd-a4ab-4845-9821-3082b519c7b4 5477428383db043141f3f37de4624101 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01830.WXS.T.hg38 C3N-01830 UCEC WXS tumor CPT0097300009 7309ed28-37a6-470a-b971-4b1981c7bd9b_wxs_gdc_realn.bam 38900837272 BAM harmonized CPTAC3 e335589e-a5c6-4acb-9689-978c6b3ef3f1 85afa9a0fbe37ac1394c95a7ef756b98 {"aliquot_tag": "ALQ_3d67b062", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01842.MethArray.Green.T C3N-01842 LUAD Methylation_Array tumor CPT0098130009 202234380102_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 453d65ec-947e-4eab-80fa-87c9d29100f2 90af219903f30c57458fbe45a70cfec5 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.MethArray.Red.T C3N-01842 LUAD Methylation_Array tumor CPT0098130009 202234380102_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e971bbb7-7074-4f9b-8202-0c0e4e900396 5ddd9e40165a293950e61baa9a443286 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.miRNA-Seq.S29_L007_R1.T C3N-01842 LUAD miRNA-Seq tumor CPT0098130006 181108_UNC31-K00269_0163_BH23TVBBXY_CAACTA_S29_L007_R1_001.unaln.bam 215987460 BAM S29_L007_R1 submitted_unaligned CPTAC3 7d1c204a-4b3a-45e6-8cfb-2383f1013d3d e49675e5d61ad3e84776e912e0a52f72 {"aliquot_tag": "ALQ_51f806c1", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.miRNA-Seq.T.hg38 C3N-01842 LUAD miRNA-Seq tumor CPT0098130006 1769e0a6-3b34-4b5b-9926-e7a090743eef_mirnaseq_gdc_realn.bam 234395036 BAM harmonized CPTAC3 9daf4cc4-b710-49af-9018-583d1c74b668 e982e15142acbe45d84627264a5f5b7f {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.RNA-Seq.chimeric.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.chimeric.gdc_realn.bam 76384445 BAM chimeric harmonized CPTAC3 143b8440-5470-4245-98e0-5ee9cff58d1b 8ee3d879e5745a14ddfb99bbe4cf6e68 {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.RNA-Seq.genomic.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.genomic.gdc_realn.bam 7747679143 BAM genomic harmonized CPTAC3 e4581ab4-36e9-4484-8adb-5cb80d350f60 cf22954d837f8fbda282d58458c70a0f {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.RNA-Seq.S57_L006_R1.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R1_001.fastq.gz 3597322967 FASTQ S57_L006_R1 submitted_unaligned CPTAC3 69d3152e-5984-45f8-9a59-726c9fd54827 1b958caeac26e176608327f7b6eed3c6 {"aliquot_tag": "ALQ_51f806c1", "sample": "S57", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.RNA-Seq.S57_L006_R2.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R2_001.fastq.gz 3853225498 FASTQ S57_L006_R2 submitted_unaligned CPTAC3 3aa0c988-0a67-41cd-a07e-b96f6c8b46b7 123eff09f36344f71932e2833ea10b33 {"aliquot_tag": "ALQ_51f806c1", "sample": "S57", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.RNA-Seq.transcriptome.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.transcriptome.gdc_realn.bam 8100084673 BAM transcriptome harmonized CPTAC3 b5420b6d-a11d-4e8b-af4b-982bbb303378 d65614a238823bb20de241c1f1cba4fb {"aliquot_tag": "ALQ_51f806c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.WGS.N C3N-01842 LUAD WGS blood_normal CPT0098170002 CPT0098170002.WholeGenome.RP-1303.bam 76700917852 BAM submitted_aligned CPTAC3 56c09248-5b4c-4302-9c6d-a148ac0542ee 6067e0c5c3f1eef3eb3c199efe1f76a1 {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01842.WGS.N.hg38 C3N-01842 LUAD WGS blood_normal CPT0098170002 20dd5461-6505-48e7-b3d5-39e1d77be2de_wgs_gdc_realn.bam 113480017444 BAM harmonized CPTAC3 ca974bf0-2aef-4f42-9604-fa42b3d13105 5657e499b1d7f030d6c5f2c9441f59bb {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01842.WGS.T C3N-01842 LUAD WGS tumor CPT0098130009 CPT0098130009.WholeGenome.RP-1303.bam 55117290667 BAM submitted_aligned CPTAC3 fb649820-5ee4-4958-a867-8af6677a263c 68a5942ff623f2123e450ebdc2d55b03 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.WGS.T.hg38 C3N-01842 LUAD WGS tumor CPT0098130009 f370ca5a-c17b-4e60-b6b3-f0aee3f5b1c9_wgs_gdc_realn.bam 80726341564 BAM harmonized CPTAC3 2554d6a3-cac4-46e0-9c57-0da24005921e 5f28065ae910faf55718664e6db2d2d8 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.WXS.N C3N-01842 LUAD WXS blood_normal CPT0098170002 CPT0098170002.WholeExome.RP-1303.bam 43168569321 BAM submitted_aligned CPTAC3 e51cbfe9-2f22-4a28-a7e2-17a6044b3b3f 1b5fb5d730e40647d7060f0759cb4d90 {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01842.WXS.N.hg38 C3N-01842 LUAD WXS blood_normal CPT0098170002 20dd5461-6505-48e7-b3d5-39e1d77be2de_wxs_gdc_realn.bam 58316986065 BAM harmonized CPTAC3 39dc8e97-a4b9-4497-813f-24b2ac89fb3d 56bc8b359c1f6f8dddc7b73ff9dc8216 {"aliquot_tag": "ALQ_a3156418", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01842.WXS.T C3N-01842 LUAD WXS tumor CPT0098130009 CPT0098130009.WholeExome.RP-1303.bam 43906212871 BAM submitted_aligned CPTAC3 ea52234f-bfea-4247-a924-97a3956bc895 514114292c5e3d87d993d5d7790eda54 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01842.WXS.T.hg38 C3N-01842 LUAD WXS tumor CPT0098130009 f370ca5a-c17b-4e60-b6b3-f0aee3f5b1c9_wxs_gdc_realn.bam 60011309826 BAM harmonized CPTAC3 413290a2-7da6-4efe-856f-db41f9307ad6 f98dedc83ab44b1709c70514f16dfde8 {"aliquot_tag": "ALQ_c1471b50", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01843.MethArray.Green.T C3N-01843 UCEC Methylation_Array tumor CPT0098270009 202234370093_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d1151fdf-b232-4289-9ba8-5738301c2f44 3b4ca412e7ef75474fc1da9cbe6a0f15 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.MethArray.Red.T C3N-01843 UCEC Methylation_Array tumor CPT0098270009 202234370093_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e3820d12-943e-40fe-834d-47efb544a357 9bc0d7d77575dd3fdbb6b3612b7a0d98 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.miRNA-Seq.S30_L007_R1.T C3N-01843 UCEC miRNA-Seq tumor CPT0098270006 181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L007_R1_001.unaln.bam 180554692 BAM S30_L007_R1 submitted_unaligned CPTAC3 89288167-6eed-4133-9e54-ea0c61e0272d 0057c844cd652b7ae770db993aeb2eec {"aliquot_tag": "ALQ_22ecd2af", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.miRNA-Seq.T.hg38 C3N-01843 UCEC miRNA-Seq tumor CPT0098270006 e4ba3017-f72a-4170-835c-588b7671ec9a_mirnaseq_gdc_realn.bam 198852500 BAM harmonized CPTAC3 bddb5f33-0a4a-4ab1-840a-cf66b2557347 d34dc407f5effc848a5cc0b737fb8e96 {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.chimeric.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.chimeric.gdc_realn.bam 82222662 BAM chimeric harmonized CPTAC3 0f2a2b08-3b48-4e29-9096-b04f483c300a b9437effb07e4cc5dad1fca4f9850333 {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.chimeric.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.chimeric.gdc_realn.bam 126819549 BAM chimeric harmonized CPTAC3 5676ac33-f631-499c-a37b-b972564d3fd4 5000fd48ecde2a5586e9dee87fe1300a {"aliquot_tag": "ALQ_77d494a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.genomic.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.genomic.gdc_realn.bam 8821705910 BAM genomic harmonized CPTAC3 a02e0ad4-e419-404c-9477-b12e010c0d72 3edd94ebeb2131935e2937233c1e8dcb {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.genomic.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.genomic.gdc_realn.bam 8725691156 BAM genomic harmonized CPTAC3 8bc72068-e01a-4356-873c-d293f6415ff0 03de162cb48a1864db8826f86640df1e {"aliquot_tag": "ALQ_77d494a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.S51_L005_R1.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R1_001.fastq.gz 4004645938 FASTQ S51_L005_R1 submitted_unaligned CPTAC3 1ce39b71-9979-4cf0-b1fa-f7dd78e1775c af626d5f0b246bfc10eb92d9ec01c8a6 {"aliquot_tag": "ALQ_22ecd2af", "sample": "S51", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.S51_L005_R2.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R2_001.fastq.gz 4345370178 FASTQ S51_L005_R2 submitted_unaligned CPTAC3 716fbb61-c173-4b1c-bfe6-dbb2253ac40b 5fa11ca36d1d28c3201275367ef4e950 {"aliquot_tag": "ALQ_22ecd2af", "sample": "S51", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.S81_R1.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R1_001.fastq.gz 7564564360 FASTQ S81_R1 submitted_unaligned CPTAC3 b62bcecf-4f5d-431b-9073-c56ab9b6080f dec9dddd2a8ad749452a17061bbdc3a9 {"aliquot_tag": "ALQ_77d494a9", "sample": "S81", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.S81_R2.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R2_001.fastq.gz 7767211640 FASTQ S81_R2 submitted_unaligned CPTAC3 3d5f76f2-a2e9-4083-8301-7f00e7f44f87 aa5780118f4ffd8ba7272af4d5636df9 {"aliquot_tag": "ALQ_77d494a9", "sample": "S81", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.transcriptome.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.transcriptome.gdc_realn.bam 9853048360 BAM transcriptome harmonized CPTAC3 fe2c7846-b307-4833-b025-f8b63e25df9d 6e1e5a47020d484ceb34bcce2323e3a8 {"aliquot_tag": "ALQ_22ecd2af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.RNA-Seq.transcriptome.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.transcriptome.gdc_realn.bam 7581847748 BAM transcriptome harmonized CPTAC3 a5845248-13f0-442e-b0ff-b3e1728e3bae 6c4637f2e305db2f5a7e59b9ba2ed320 {"aliquot_tag": "ALQ_77d494a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.WGS.N C3N-01843 UCEC WGS blood_normal CPT0098310002 CPT0098310002.WholeGenome.RP-1303.bam 56754312204 BAM submitted_aligned CPTAC3 03e8d6eb-573b-4ce2-8ce3-1710bff4d929 c70e2188a47b8a7a170974c7aa2e8232 {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01843.WGS.N.hg38 C3N-01843 UCEC WGS blood_normal CPT0098310002 2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wgs_gdc_realn.bam 83161577173 BAM harmonized CPTAC3 d8bcb6d3-7c4a-4dfe-94f9-6168784a2226 445dba940d5c6348b9ff1cdbb346541d {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01843.WGS.T C3N-01843 UCEC WGS tumor CPT0098270009 CPT0098270009.WholeGenome.RP-1303.bam 59310205505 BAM submitted_aligned CPTAC3 79588eda-f3a6-4501-8f3c-da6eb96b5393 63ddba6ff19761423ef74f77baff51c0 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.WGS.T.hg38 C3N-01843 UCEC WGS tumor CPT0098270009 982621a1-4bca-4b1e-ae32-15d4b9b860b6_wgs_gdc_realn.bam 87049722141 BAM harmonized CPTAC3 37e8a8b0-1193-45aa-88ff-50ae76858075 65ec6cb30829d99ada47c60315906ea6 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.WXS.N C3N-01843 UCEC WXS blood_normal CPT0098310002 CPT0098310002.WholeExome.RP-1303.bam 30158883116 BAM submitted_aligned CPTAC3 33510944-42d2-4859-a4f7-f580a3719eb9 82bc86a3a30c6749a510899ad1b1b697 {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01843.WXS.N.hg38 C3N-01843 UCEC WXS blood_normal CPT0098310002 2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wxs_gdc_realn.bam 41588850052 BAM harmonized CPTAC3 2c0022ef-c48f-48b0-9409-74cee5cd7fc1 51b55f1c6c36f5acfa6ee238fe700fb8 {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01843.WXS.T C3N-01843 UCEC WXS tumor CPT0098270009 CPT0098270009.WholeExome.RP-1303.bam 44806548748 BAM submitted_aligned CPTAC3 05532c1f-78aa-4bd4-81ba-7a970f7b4cc9 8f00868e261f02239d4df322e717397b {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01843.WXS.T.hg38 C3N-01843 UCEC WXS tumor CPT0098270009 982621a1-4bca-4b1e-ae32-15d4b9b860b6_wxs_gdc_realn.bam 62083337377 BAM harmonized CPTAC3 3519a923-e879-45d2-bfc1-1d76f173d915 f97dbae7e240e87b1d1f797cf685b555 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01846.MethArray.Green.A C3N-01846 LSCC Methylation_Array tissue_normal CPT0098800009 203219650004_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6ec2cd5d-4f83-4ec5-b400-2f0b0a3d89bb a03387dca8937bf2ccae8bf84c73ebb7 {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.MethArray.Green.T C3N-01846 LSCC Methylation_Array tumor CPT0098770009 202234370091_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ae46c687-b113-4f55-ae20-3120bba5f75b b041ea28087bda0cb3c9c34410ef324a {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.MethArray.Red.A C3N-01846 LSCC Methylation_Array tissue_normal CPT0098800009 203219650004_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 586a946c-697a-4760-992a-ba355e2771f7 1d7523ec2e6195015757b14cf96272ef {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.MethArray.Red.T C3N-01846 LSCC Methylation_Array tumor CPT0098770009 202234370091_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 1ca43aaa-a00b-4259-9bc7-41ad3972e62f c214b2231a938c4d580f18d25316f924 {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.miRNA-Seq.A.hg38 C3N-01846 LSCC miRNA-Seq tissue_normal CPT0098800006 8e9dffa0-f7b1-4803-a585-013c5b88ceb5_mirnaseq_gdc_realn.bam 313377717 BAM harmonized CPTAC3 d5ec8b20-a7d3-4ac8-ba53-45de25e01caa ce954124ee18eab25de4f174370f18a7 {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.miRNA-Seq.S30_L006_R1.A C3N-01846 LSCC miRNA-Seq tissue_normal CPT0098800006 181113_UNC31-K00269_0164_AH23NNBBXY_GCCAAT_S30_L006_R1_001.unaln.bam 284961330 BAM S30_L006_R1 submitted_unaligned CPTAC3 3cba235b-725f-4dd9-8c8a-22cf413f08a9 c841c14b057bc64f9d8b9c4932710c04 {"aliquot_tag": "ALQ_31572dd9", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.miRNA-Seq.S33_L003_R1.T C3N-01846 LSCC miRNA-Seq tumor CPT0098770013 181119_UNC31-K00269_0165_AH27WCBBXY_GATCAG_S33_L003_R1_001.unaln.bam 169947801 BAM S33_L003_R1 submitted_unaligned CPTAC3 18792a0d-15d6-44b3-9b70-cb5bd4865b8f f861839536e266c99eae9ee2338d7fc0 {"aliquot_tag": "ALQ_1b5086d2", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.miRNA-Seq.T.hg38 C3N-01846 LSCC miRNA-Seq tumor CPT0098770013 14427dc4-48e7-4522-a9d5-8af6b1acac0e_mirnaseq_gdc_realn.bam 187969268 BAM harmonized CPTAC3 e7507908-334a-4b6b-8905-3274377915eb 54cfb95615d6bbf041c462ba34d947c3 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.RNA-Seq.chimeric.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.chimeric.gdc_realn.bam 43839177 BAM chimeric harmonized CPTAC3 5a08ce0c-e758-42f8-9018-38424f5e426b 30e7c88ca75287061a75847c27e26eb1 {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.RNA-Seq.chimeric.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.chimeric.gdc_realn.bam 68603546 BAM chimeric harmonized CPTAC3 bae7ab81-130c-4b9e-aecf-58825c943aec 7d12a3d6d71f1f3a057f6b47a3fde689 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.RNA-Seq.genomic.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.genomic.gdc_realn.bam 9086285710 BAM genomic harmonized CPTAC3 27690de8-9619-41fb-ae26-fc6701bf526a 973f8c02e694d16df6776ed12d7aee3c {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.RNA-Seq.genomic.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.genomic.gdc_realn.bam 9616875520 BAM genomic harmonized CPTAC3 d71ced21-7289-4890-b85c-c028a07bf3e5 b2b54d8b201aa3e5c1f27a152106d4f9 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.RNA-Seq.S22_L006_R1.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4074686817 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 8fdec590-e14f-43d1-b9b0-09521ef2894f e78ceaa7c842df94cd125c940d536913 {"aliquot_tag": "ALQ_31572dd9", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.RNA-Seq.S22_L006_R2.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4536665085 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 a4a4a7fd-115a-4337-9000-0ab0ffd38450 8fea59d616a2f9f1845967b223ffa18c {"aliquot_tag": "ALQ_31572dd9", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.RNA-Seq.S5_L008_R1.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R1_001.fastq.gz 4008737637 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 318bc3c8-3804-423c-ac02-32b16694ac35 b7d50237eadbbdb87787a5bb73ce483a {"aliquot_tag": "ALQ_1b5086d2", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.RNA-Seq.S5_L008_R2.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R2_001.fastq.gz 4518105699 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 4adcca16-1732-4c17-8c4b-6fa33752717a 6861ed014d7346b793996e43cf4e753e {"aliquot_tag": "ALQ_1b5086d2", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.RNA-Seq.transcriptome.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.transcriptome.gdc_realn.bam 11863347066 BAM transcriptome harmonized CPTAC3 112dd47e-0661-486e-ba78-7ead9aa6c697 4b909f9fced5f3906682a54c2cc44af4 {"aliquot_tag": "ALQ_31572dd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.RNA-Seq.transcriptome.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.transcriptome.gdc_realn.bam 10644613853 BAM transcriptome harmonized CPTAC3 02feb8b4-3165-4caf-8da6-41b844f57d2c e3721d4672b725c1019c3a79f1478ab0 {"aliquot_tag": "ALQ_1b5086d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.WGS.A C3N-01846 LSCC WGS tissue_normal CPT0098800009 CPT0098800009.WholeGenome.RP-1303.bam 59755756712 BAM submitted_aligned CPTAC3 95660a75-06a6-44c7-8ba0-a0d1adea2241 29807cf2d51f641eaeb4e2f746402d18 {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.WGS.A.hg38 C3N-01846 LSCC WGS tissue_normal CPT0098800009 2cb0e8ec-b8a9-4f65-aeb8-3a98d8889f53_wgs_gdc_realn.bam 85458051221 BAM harmonized CPTAC3 072edec1-52d2-43f1-bdc0-7cb854c6281b a519e297ffa6e9f652cd78e27d8156a3 {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.WGS.N C3N-01846 LSCC WGS blood_normal CPT0098810002 CPT0098810002.WholeGenome.RP-1303.bam 61021703039 BAM submitted_aligned CPTAC3 d699cfd0-ded2-4fd2-a22f-8bf429fb9295 cca2292f51f6442bca25098a9d3ef3c2 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01846.WGS.N.hg38 C3N-01846 LSCC WGS blood_normal CPT0098810002 b47a302c-4e31-4c79-85e3-ead148c0237b_wgs_gdc_realn.bam 90343628884 BAM harmonized CPTAC3 67b1acc9-4e47-4745-8e98-4261b6c3669a a78b391d376fd87ccae5377a3c15d9e8 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01846.WGS.T C3N-01846 LSCC WGS tumor CPT0098770009 CPT0098770009.WholeGenome.RP-1303.bam 62991609520 BAM submitted_aligned CPTAC3 c7c2fcf2-ef09-4225-a52e-710991fe6266 41dfeeb3002ce175755e88a9520e08ce {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.WGS.T.hg38 C3N-01846 LSCC WGS tumor CPT0098770009 e7aeabbd-a8b9-4804-a19d-a02b58cb27d7_wgs_gdc_realn.bam 92216746319 BAM harmonized CPTAC3 2fa98c49-1ae1-4f50-9e86-e83d1a87e80e ff637587b7f4b1e801137dbe40759257 {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.WXS.A C3N-01846 LSCC WXS tissue_normal CPT0098800009 CPT0098800009.WholeExome.RP-1303.bam 26666724663 BAM submitted_aligned CPTAC3 942e12ff-326a-4007-90cd-39181fea1972 6a9e84b0889d6011ec7be55cf8ddef8c {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.WXS.A.hg38 C3N-01846 LSCC WXS tissue_normal CPT0098800009 2cb0e8ec-b8a9-4f65-aeb8-3a98d8889f53_wxs_gdc_realn.bam 35525792099 BAM harmonized CPTAC3 a4b8536d-66e4-4716-803e-0c22ddee814a 0406ae841dc6dad0e15a2ece2131fc9b {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01846.WXS.N C3N-01846 LSCC WXS blood_normal CPT0098810002 CPT0098810002.WholeExome.RP-1303.bam 28397486507 BAM submitted_aligned CPTAC3 e2dc34ac-fd2b-4db4-bc8f-c240c018078b 7e6d3d3a50d077a2e31a7fc740c1eda0 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01846.WXS.N.hg38 C3N-01846 LSCC WXS blood_normal CPT0098810002 b47a302c-4e31-4c79-85e3-ead148c0237b_wxs_gdc_realn.bam 38428641055 BAM harmonized CPTAC3 6fd023ee-ac38-43b3-a65a-8b56f0a445ac 0ebe6a1c8119500b3a794c1ebc743010 {"aliquot_tag": "ALQ_b5ac070", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01846.WXS.T C3N-01846 LSCC WXS tumor CPT0098770009 CPT0098770009.WholeExome.RP-1303.bam 29410240347 BAM submitted_aligned CPTAC3 ef4127d1-7cd7-4d34-819f-4c6e415a79d6 dc2f3a23e26d40777952171c790f57ae {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01846.WXS.T.hg38 C3N-01846 LSCC WXS tumor CPT0098770009 e7aeabbd-a8b9-4804-a19d-a02b58cb27d7_wxs_gdc_realn.bam 40252560339 BAM harmonized CPTAC3 079acb9d-120b-4d1a-a112-711f74112aee 9cee4fb5f522e0c649010fdf9545edb7 {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01847.MethArray.Green.T C3N-01847 UCEC Methylation_Array tumor CPT0098920009 202234360009_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6dfc9a37-4cb6-4850-a076-0c6cc727c00d 36083134dd6f2758cf9096f355dd1668 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.MethArray.Red.T C3N-01847 UCEC Methylation_Array tumor CPT0098920009 202234360009_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 abb0167a-cb01-4431-a546-b7726ab4b091 3c11554ca842bf89aa0c12b211cd497c {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.miRNA-Seq.A.hg38 C3N-01847 UCEC miRNA-Seq tissue_normal CPT0098940009 5ab2614e-af51-4b67-9994-5afb8d1709fa_mirnaseq_gdc_realn.bam 300991421 BAM harmonized CPTAC3 cc66c502-d44a-4f13-b6be-5a5436d08862 f400b959ff5827f55176dbcc50b0dc2f {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.miRNA-Seq.S15_L005_R1.A C3N-01847 UCEC miRNA-Seq tissue_normal CPT0098940009 181113_UNC31-K00269_0164_AH23NNBBXY_CTATAC_S15_L005_R1_001.unaln.bam 264590327 BAM S15_L005_R1 submitted_unaligned CPTAC3 1f361857-5767-4e3e-802e-5336d0cbca8b 41c6fb3c3c39451454debe16986e870a {"aliquot_tag": "ALQ_9f34452d", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.miRNA-Seq.S31_L007_R1.T C3N-01847 UCEC miRNA-Seq tumor CPT0098920006 181108_UNC31-K00269_0163_BH23TVBBXY_CACGAT_S31_L007_R1_001.unaln.bam 231443881 BAM S31_L007_R1 submitted_unaligned CPTAC3 0eca0d17-4a9b-4822-95a3-3e5231f23fb8 832a971dfee511e5cf39958a7c71b0f4 {"aliquot_tag": "ALQ_80cbad1c", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.miRNA-Seq.T.hg38 C3N-01847 UCEC miRNA-Seq tumor CPT0098920006 a5f76433-232d-4e63-bfb9-02faf4540d8a_mirnaseq_gdc_realn.bam 250661357 BAM harmonized CPTAC3 063470e9-14a9-4e74-b2ce-54c21ffc1af2 e5d226967cef3b1fec560373a8c1fc9e {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.chimeric.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.chimeric.gdc_realn.bam 29372314 BAM chimeric harmonized CPTAC3 8bab7736-2aac-4a4b-ad5b-76ff48304c84 895a73c42b35ded3e1a27c7800f43f65 {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.RNA-Seq.chimeric.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.chimeric.gdc_realn.bam 84266212 BAM chimeric harmonized CPTAC3 b7293e50-8a59-4bd0-8a5b-a4035e50d4b6 79b2f485754713e1ff23579617f5a290 {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.chimeric.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.chimeric.gdc_realn.bam 195986840 BAM chimeric harmonized CPTAC3 26deefa1-4611-42a1-b514-398db9b2fc3c 10af977ee7298a0ad561be437ac5896d {"aliquot_tag": "ALQ_9fd762c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.genomic.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.genomic.gdc_realn.bam 8298532370 BAM genomic harmonized CPTAC3 f30f0e9f-1bb0-444d-a94a-d40ab5d34236 a3ad898ac6d0446f555c08231d463590 {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.RNA-Seq.genomic.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.genomic.gdc_realn.bam 9508565931 BAM genomic harmonized CPTAC3 a052819b-3fb2-44ac-88ba-18a8ee3cba54 e648ab02ceab89c62b3e448abc1a357d {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.genomic.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.genomic.gdc_realn.bam 10136624469 BAM genomic harmonized CPTAC3 05016140-73e9-4404-b193-70382df50125 2747482d0701f7b4bcaf57975e7d27b4 {"aliquot_tag": "ALQ_9fd762c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.S20_L006_R1.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3598866202 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 30bd8b82-d377-4e4a-8233-87dc305f5dcb 231c31dd929682b3e7266b883aa45d59 {"aliquot_tag": "ALQ_9f34452d", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.RNA-Seq.S20_L006_R2.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3946689885 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 20343e6a-3fde-41dc-abc2-96a59ce7e5bc a62e7d24d253a885a453419e1ca969b7 {"aliquot_tag": "ALQ_9f34452d", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.RNA-Seq.S34_R1.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R1_001.fastq.gz 6376631553 FASTQ S34_R1 submitted_unaligned CPTAC3 d326a3be-cccf-4fc6-9e9d-2e98d98926d3 fc40f428b3fb6f559ca6bf2380d0395c {"aliquot_tag": "ALQ_9fd762c3", "sample": "S34", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.S34_R2.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R2_001.fastq.gz 6746868562 FASTQ S34_R2 submitted_unaligned CPTAC3 ea94136e-7d44-4384-b8ce-2ae1680cc755 beeb439205f533f865d5ce17adc40d81 {"aliquot_tag": "ALQ_9fd762c3", "sample": "S34", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.S52_L005_R1.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R1_001.fastq.gz 4405831647 FASTQ S52_L005_R1 submitted_unaligned CPTAC3 7a769205-8931-4eb0-b6d1-344016aa5232 5ac1d106ddc83442a698a1a7cf85d6fc {"aliquot_tag": "ALQ_80cbad1c", "sample": "S52", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.S52_L005_R2.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R2_001.fastq.gz 4821043094 FASTQ S52_L005_R2 submitted_unaligned CPTAC3 cd0e6b1b-d41d-4719-ba6d-c16966ede8a1 f7eddcc1cb93a845ee0b16aa77ddb158 {"aliquot_tag": "ALQ_80cbad1c", "sample": "S52", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.transcriptome.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.transcriptome.gdc_realn.bam 10592431029 BAM transcriptome harmonized CPTAC3 85b08a49-c7dd-4172-8530-7c08c769baba ab24aea7e996c0467e0d8776aec878d8 {"aliquot_tag": "ALQ_9f34452d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.RNA-Seq.transcriptome.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.transcriptome.gdc_realn.bam 11577500423 BAM transcriptome harmonized CPTAC3 62b13918-7838-4d4b-b596-9f0f06673fb2 beaad0c8fcd5e78f95b35d0785ce4f1b {"aliquot_tag": "ALQ_80cbad1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.RNA-Seq.transcriptome.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.transcriptome.gdc_realn.bam 7630435401 BAM transcriptome harmonized CPTAC3 66bcd82c-952c-467b-823d-f2ca453a7d01 e0dccf48bf0106efded93471b298da5e {"aliquot_tag": "ALQ_9fd762c3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.WGS.A C3N-01847 UCEC WGS tissue_normal CPT0098940006 CPT0098940006.WholeGenome.RP-1303.bam 58642172395 BAM submitted_aligned CPTAC3 159dbb83-fc57-4b14-bf4f-90a9ce88a373 9af7aaa81e3633406d3a69606e9f5590 {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.WGS.A.hg38 C3N-01847 UCEC WGS tissue_normal CPT0098940006 21d913ee-e1c1-4e89-876f-f026cd2e654c_wgs_gdc_realn.bam 87007708907 BAM harmonized CPTAC3 462f2069-63fc-427f-9ad3-3e7d55788cab d130e85577671e053854ace5c9fea549 {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.WGS.N C3N-01847 UCEC WGS blood_normal CPT0098950002 CPT0098950002.WholeGenome.RP-1303.bam 62529667972 BAM submitted_aligned CPTAC3 4ede2cd7-f1d7-43bf-affd-dcc871bbff4a 49db6eb273c654566020ec66fe743b97 {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01847.WGS.N.hg38 C3N-01847 UCEC WGS blood_normal CPT0098950002 5c5485ff-3bbe-49a3-ba3b-ea90a3c1ebd4_wgs_gdc_realn.bam 93404678397 BAM harmonized CPTAC3 034ec33a-1523-479b-b3af-517c1213296d 5979ff9681e6298dcb8d24de9a9cd3c5 {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01847.WGS.T C3N-01847 UCEC WGS tumor CPT0098920009 CPT0098920009.WholeGenome.RP-1303.bam 62247914283 BAM submitted_aligned CPTAC3 4727ee62-3e5e-4dc6-85d1-2efdb5bdfe89 12115750edd40a15a8254ffeb3051d34 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.WGS.T.hg38 C3N-01847 UCEC WGS tumor CPT0098920009 566e5e85-e970-4eb4-b258-9bcabb27379f_wgs_gdc_realn.bam 91105251479 BAM harmonized CPTAC3 f481e848-c0cc-4544-84c8-b9a59196108c 9ce300bb7c3b566fc3248c4d6eaed292 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.WXS.A C3N-01847 UCEC WXS tissue_normal CPT0098940006 CPT0098940006.WholeExome.RP-1303.bam 28047481361 BAM submitted_aligned CPTAC3 e36dd4b3-e04d-4928-8af0-f79a5161e44f f85d5107152873c40c9b2254ae368b16 {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.WXS.A.hg38 C3N-01847 UCEC WXS tissue_normal CPT0098940006 21d913ee-e1c1-4e89-876f-f026cd2e654c_wxs_gdc_realn.bam 38032151857 BAM harmonized CPTAC3 cc618664-fdbc-4ced-9859-cf7d5dddd84e 44f3bc3544ebfc11c3ebf21096642b2a {"aliquot_tag": "ALQ_f8b58bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01847.WXS.N C3N-01847 UCEC WXS blood_normal CPT0098950002 CPT0098950002.WholeExome.RP-1303.bam 65658213770 BAM submitted_aligned CPTAC3 116a9935-e66f-4871-a14a-440516e24c3b 1a678017acacb7e051f846c688efeff0 {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01847.WXS.N.hg38 C3N-01847 UCEC WXS blood_normal CPT0098950002 5c5485ff-3bbe-49a3-ba3b-ea90a3c1ebd4_wxs_gdc_realn.bam 90102900189 BAM harmonized CPTAC3 d4e9b2bd-78b7-4199-aff3-3ae6c731351f ce752495b62e3f62a36fa114fd924ddc {"aliquot_tag": "ALQ_3586b515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01847.WXS.T C3N-01847 UCEC WXS tumor CPT0098920009 CPT0098920009.WholeExome.RP-1303.bam 41443172602 BAM submitted_aligned CPTAC3 d218fd8d-8040-4678-a23b-5fd6f4e2984f 2060f5653ee927819a46980d50f1924c {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01847.WXS.T.hg38 C3N-01847 UCEC WXS tumor CPT0098920009 566e5e85-e970-4eb4-b258-9bcabb27379f_wxs_gdc_realn.bam 56912198975 BAM harmonized CPTAC3 f13b1586-244c-45d8-b0f3-766cad53ba09 947218eefa8ea04e80a83fcd9834c0d3 {"aliquot_tag": "ALQ_1074b08d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.MethArray.Green.T C3N-01848 UCEC Methylation_Array tumor CPT0099050009 202234360028_R08C01_Grn.idat 13676227 IDAT Green NA CPTAC3 b9173811-7d6f-4bda-902c-841bf2fa1365 5e248dc4ad61c9a0f5e2ebb6efa09cc8 {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.MethArray.Red.T C3N-01848 UCEC Methylation_Array tumor CPT0099050009 202234360028_R08C01_Red.idat 13676227 IDAT Red NA CPTAC3 6c369da8-db3a-4e16-b1e3-83930d57b2b6 5c4ceeb10677e4789161970ae285e0ad {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.miRNA-Seq.A.hg38 C3N-01848 UCEC miRNA-Seq tissue_normal CPT0099080009 59c781f9-d87f-4daf-bb72-fdc2d82090a5_mirnaseq_gdc_realn.bam 337481800 BAM harmonized CPTAC3 34c6bf01-3489-49fb-a73a-f5b7d1e959ef 277cd65915e3a614204f2f74e1c437af {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.miRNA-Seq.S17_L005_R1.A C3N-01848 UCEC miRNA-Seq tissue_normal CPT0099080009 181113_UNC31-K00269_0164_AH23NNBBXY_GACGAC_S17_L005_R1_001.unaln.bam 288768694 BAM S17_L005_R1 submitted_unaligned CPTAC3 b45a3e03-b792-49d0-b44b-8f3f86bdc6ee 05a6eede9aa9d23bbe0fe2c3a68d1792 {"aliquot_tag": "ALQ_dbbcf250", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.miRNA-Seq.S32_L007_R1.T C3N-01848 UCEC miRNA-Seq tumor CPT0099050006 181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L007_R1_001.unaln.bam 208984650 BAM S32_L007_R1 submitted_unaligned CPTAC3 fc3f3c0c-2417-4354-b3d6-3729795430cd 557747477865332276afd956726475e6 {"aliquot_tag": "ALQ_b3932b70", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.miRNA-Seq.T.hg38 C3N-01848 UCEC miRNA-Seq tumor CPT0099050006 ebc770aa-86dd-4745-9ec9-bc56d39ddd58_mirnaseq_gdc_realn.bam 231356726 BAM harmonized CPTAC3 7670c4b1-ca54-4e4b-8825-5889668d3f54 8759ec759bb628641a4b4fd787751bb9 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.chimeric.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.chimeric.gdc_realn.bam 41229277 BAM chimeric harmonized CPTAC3 8ecef444-9379-4906-8c27-0c2857342859 c2f2ea463915c1c6f60e60e5cd7a18e6 {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.RNA-Seq.chimeric.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.chimeric.gdc_realn.bam 59975893 BAM chimeric harmonized CPTAC3 5935e8a2-43ba-4823-9895-697acde4d594 f10f35156de84952c475788e8065c9e1 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.chimeric.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.chimeric.gdc_realn.bam 53306657 BAM chimeric harmonized CPTAC3 5e2d2680-2159-4511-9cf6-1be27b2d8914 accfafd9052173abad6127159720a812 {"aliquot_tag": "ALQ_e6ab6d76", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.genomic.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.genomic.gdc_realn.bam 9926451360 BAM genomic harmonized CPTAC3 7d8019b3-0b0f-47e7-8e7c-8ecd98dc9869 cb0a2ab78ac3fdcd81336013ea2ae5b7 {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.RNA-Seq.genomic.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.genomic.gdc_realn.bam 7893778255 BAM genomic harmonized CPTAC3 30bfb7ff-39c1-41c8-9e39-1158d7254d67 0abc29edf5318b128b133a1213114df6 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.genomic.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.genomic.gdc_realn.bam 8141324920 BAM genomic harmonized CPTAC3 7776390c-6669-4360-aefd-44e9b215ce9b 9af777fa5d50b16061c602ee042ba896 {"aliquot_tag": "ALQ_e6ab6d76", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.S18_L005_R1.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3998734194 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 32347445-ca9b-48d5-86ed-8aa62be55b12 3ec46915a4a8aaf1a1006582e141321c {"aliquot_tag": "ALQ_dbbcf250", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.RNA-Seq.S18_L005_R2.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4446514471 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 11bdc837-b506-432e-806c-a1010aa468b4 420e3cd2ed4a8ca6c65093e5232606a0 {"aliquot_tag": "ALQ_dbbcf250", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.RNA-Seq.S42_R1.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R1_001.fastq.gz 3988583172 FASTQ S42_R1 submitted_unaligned CPTAC3 076bc912-4a82-4cec-a4d1-c51023192c14 e5384cbfc0cdd4ec738f27d6dafe4789 {"aliquot_tag": "ALQ_e6ab6d76", "sample": "S42", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.S42_R2.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R2_001.fastq.gz 4477653222 FASTQ S42_R2 submitted_unaligned CPTAC3 243c6178-fed8-4792-b4b6-b93d8d69e2bd f8a1782e50acbda4cb2712798b2c88db {"aliquot_tag": "ALQ_e6ab6d76", "sample": "S42", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.S53_L005_R1.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R1_001.fastq.gz 3597399012 FASTQ S53_L005_R1 submitted_unaligned CPTAC3 f9319d30-0a6a-4087-b77f-af799efb67b0 4f08cdecf74f9b9ff5deb9b5929d13cd {"aliquot_tag": "ALQ_b3932b70", "sample": "S53", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.S53_L005_R2.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R2_001.fastq.gz 3947068221 FASTQ S53_L005_R2 submitted_unaligned CPTAC3 e63698ba-9f3a-4353-ac11-a4a669d86cc2 ce6d6dd29e011ebb2c07ab234f071fbc {"aliquot_tag": "ALQ_b3932b70", "sample": "S53", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.transcriptome.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.transcriptome.gdc_realn.bam 11870911906 BAM transcriptome harmonized CPTAC3 9027bf17-fb27-4060-9a3c-f2cb10749319 cf482aa12b7084815e47bff704b31157 {"aliquot_tag": "ALQ_dbbcf250", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.RNA-Seq.transcriptome.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.transcriptome.gdc_realn.bam 9094382622 BAM transcriptome harmonized CPTAC3 04911655-a333-412c-9aa3-c0903a592251 1a4d845b58d60a6a6fb4fbe851bf1297 {"aliquot_tag": "ALQ_b3932b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.RNA-Seq.transcriptome.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.transcriptome.gdc_realn.bam 7246552828 BAM transcriptome harmonized CPTAC3 68a772f5-2cca-4d37-bb6f-a3c6f1fad2e4 03e104ba1a26ea8476af20f31589604c {"aliquot_tag": "ALQ_e6ab6d76", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.WGS.A C3N-01848 UCEC WGS tissue_normal CPT0099080006 CPT0099080006.WholeGenome.RP-1303.bam 57074268629 BAM submitted_aligned CPTAC3 eec33459-1fcc-4a31-b746-24d65d8237ea 0f0e599561c765909bbe0fbc54f9a4c4 {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.WGS.A.hg38 C3N-01848 UCEC WGS tissue_normal CPT0099080006 428a6d25-6316-4e72-88b3-4f8e6203de8a_wgs_gdc_realn.bam 82687312539 BAM harmonized CPTAC3 698d94c2-fdd2-4fd6-abd8-6b0fdde43d0d fc8de03efd1c768ee76cf83198cb260f {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.WGS.N C3N-01848 UCEC WGS blood_normal CPT0099090002 CPT0099090002.WholeGenome.RP-1303.bam 50887403993 BAM submitted_aligned CPTAC3 4d8bec4e-53ed-4747-8e7f-ba41a253de41 1025489fba0d8c4d8772cd588dbe6212 {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01848.WGS.N.hg38 C3N-01848 UCEC WGS blood_normal CPT0099090002 edcd95ca-3e65-452b-9345-de6305e24ad7_wgs_gdc_realn.bam 76159274979 BAM harmonized CPTAC3 2e445f93-e8af-4308-9ca7-750f9ff80d2b a838cf0a8fa23b5525d7621970462771 {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01848.WGS.T C3N-01848 UCEC WGS tumor CPT0099050009 CPT0099050009.WholeGenome.RP-1303.bam 68688925278 BAM submitted_aligned CPTAC3 bf8ed2f6-720e-45bc-aa92-4850be3e8e52 0cdf5d287ddcf14635b06aeaa9cf3d8d {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.WGS.T.hg38 C3N-01848 UCEC WGS tumor CPT0099050009 b2c00315-f249-4e89-8999-fffde64e2f8f_wgs_gdc_realn.bam 101078962653 BAM harmonized CPTAC3 8f804e44-65d6-4418-b946-67b471a69ebc 70c1506f9af40c7b935d0371f73239ad {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.WXS.A C3N-01848 UCEC WXS tissue_normal CPT0099080006 CPT0099080006.WholeExome.RP-1303.bam 31889663666 BAM submitted_aligned CPTAC3 70cec465-e9a7-4d8c-97ef-10c20b2296a1 a66406baac59bb0c3cc4f042effd5a17 {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.WXS.A.hg38 C3N-01848 UCEC WXS tissue_normal CPT0099080006 428a6d25-6316-4e72-88b3-4f8e6203de8a_wxs_gdc_realn.bam 43194765696 BAM harmonized CPTAC3 161ffa2b-9e33-4b66-aeff-18421fa95fa1 a82a26854a403325f0ea3489b1cd6200 {"aliquot_tag": "ALQ_4b03efc1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01848.WXS.N C3N-01848 UCEC WXS blood_normal CPT0099090002 CPT0099090002.WholeExome.RP-1303.bam 57529289123 BAM submitted_aligned CPTAC3 149cf4d7-a966-4160-804e-59786da9f889 ffde313807faba5fb20877ccb6364a64 {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01848.WXS.N.hg38 C3N-01848 UCEC WXS blood_normal CPT0099090002 edcd95ca-3e65-452b-9345-de6305e24ad7_wxs_gdc_realn.bam 78453362329 BAM harmonized CPTAC3 13124b5f-01ee-4be8-8029-98fd79e0c4b3 615b4707a8c1973a052776878fdb137b {"aliquot_tag": "ALQ_710e0268", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01848.WXS.T C3N-01848 UCEC WXS tumor CPT0099050009 CPT0099050009.WholeExome.RP-1303.bam 34656128446 BAM submitted_aligned CPTAC3 def8f940-d394-496a-b02e-69462fb0f37d 50b8cab9b4c99e5f401b220a79c200ec {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01848.WXS.T.hg38 C3N-01848 UCEC WXS tumor CPT0099050009 b2c00315-f249-4e89-8999-fffde64e2f8f_wxs_gdc_realn.bam 47310254439 BAM harmonized CPTAC3 f27ee995-1030-41d3-b6e6-e2c0251bbd4a 40644f255d51e9bb2c6befb7fc9415ac {"aliquot_tag": "ALQ_232c36e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.MethArray.Green.T C3N-01849 GBM Methylation_Array tumor CPT0224780006 204367490048_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7af526c7-8356-4326-bdbe-617c651f9641 8aac2ade361defa86852d283b4300f6d {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.MethArray.Red.T C3N-01849 GBM Methylation_Array tumor CPT0224780006 204367490048_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 c8bc6ee7-95dc-48a6-8d12-12283d8df444 b74a22bb7cd9c76b950dd3439a10f1a9 {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.miRNA-Seq.S41_L002_R1.T C3N-01849 GBM miRNA-Seq tumor CPT0224780009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 228567039 BAM S41_L002_R1 submitted_unaligned CPTAC3 3dbe979d-bd63-4379-9bf1-d5a114081b2e a3fc92c38e8b4f9cb4c8f89e694ba320 {"aliquot_tag": "ALQ_d4f297f8", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.miRNA-Seq.T.hg38 C3N-01849 GBM miRNA-Seq tumor CPT0224780009 16162ec0-7b2d-40a5-ac4a-bb5b5cb57f5e_mirnaseq_gdc_realn.bam 252060926 BAM harmonized CPTAC3 c25da38d-81d8-4793-839d-6109462fa3d5 0ff6eb823c23c990f5f9caf6e8e0b261 {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.RNA-Seq.chimeric.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.chimeric.gdc_realn.bam 38337433 BAM chimeric harmonized CPTAC3 822efd01-9f45-41f2-a9ab-9c2511127750 900f5f6386d7da981314a4f4bc069cbc {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.RNA-Seq.genomic.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.genomic.gdc_realn.bam 7511253933 BAM genomic harmonized CPTAC3 71bd0e47-7914-45c4-a405-d62c98fad960 608c8362bf5e55fc44440fae094a27f0 {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.RNA-Seq.S9_L003_R1.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R1_001.fastq.gz 3307839110 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 583387e2-75e7-4f09-be36-486effc226fd 275f694446a8e500c4f148c69f7dd131 {"aliquot_tag": "ALQ_d4f297f8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.RNA-Seq.S9_L003_R2.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 83d649cc-79e9-457a-9e7f-e0fb46c94f8a 6b50106dd2476b2133b3a33b3f73b759 {"aliquot_tag": "ALQ_d4f297f8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.RNA-Seq.transcriptome.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.transcriptome.gdc_realn.bam 7944200702 BAM transcriptome harmonized CPTAC3 2a563866-7933-45a1-bb39-cf7b752b0d19 5d0d360fa5782d19e9d3bb7a81bec004 {"aliquot_tag": "ALQ_d4f297f8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.WGS.N C3N-01849 GBM WGS blood_normal CPT0224830002 CPT0224830002.WholeGenome.RP-2158.bam 26026553207 BAM submitted_aligned CPTAC3 41abf016-07f9-4ad3-a5d6-861a86fc439c e6e9c9e206b70981c1e4eab89c64feca {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01849.WGS.N.hg38 C3N-01849 GBM WGS blood_normal CPT0224830002 bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wgs_gdc_realn.bam 78090125732 BAM harmonized CPTAC3 20c0f60b-3fab-4d2e-878b-23ad2d24d00a 1711ae80c896e021e0db28a9d227c358 {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01849.WGS.T C3N-01849 GBM WGS tumor CPT0224780006 CPT0224780006.WholeGenome.RP-2158.bam 22035764736 BAM submitted_aligned CPTAC3 6a6f9bda-1e93-4fa1-83d0-dd3e624844de ef78a03d4dc1f8fdc6a28202aa056d29 {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.WGS.T.hg38 C3N-01849 GBM WGS tumor CPT0224780006 049c6c50-80e2-46b6-bb4b-951301cf76f1_wgs_gdc_realn.bam 63623607195 BAM harmonized CPTAC3 1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73 b9be9d365b2a7088ac07d70bcbc3fadc {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.WXS.N C3N-01849 GBM WXS blood_normal CPT0224830002 CPT0224830002.WholeExome.RP-1303.bam 28026085376 BAM submitted_aligned CPTAC3 70d01c24-e736-408e-8ddf-61c55dc60de4 b7e2854beca2d2129172d4e84fcc29d9 {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01849.WXS.N.hg38 C3N-01849 GBM WXS blood_normal CPT0224830002 bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wxs_gdc_realn.bam 38515425322 BAM harmonized CPTAC3 f5f45a87-326b-47a8-b39c-0efb79094bd5 ffd271b0434cd968be4861f2c750fc62 {"aliquot_tag": "ALQ_c5a6cdb4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01849.WXS.T C3N-01849 GBM WXS tumor CPT0224780006 CPT0224780006.WholeExome.RP-1303.bam 17373452560 BAM submitted_aligned CPTAC3 65c12110-2efa-44de-a6a1-8823328fd1b0 976ce588b28ff245609a66e8692bfc8a {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01849.WXS.T.hg38 C3N-01849 GBM WXS tumor CPT0224780006 049c6c50-80e2-46b6-bb4b-951301cf76f1_wxs_gdc_realn.bam 24379241229 BAM harmonized CPTAC3 947927ab-08a2-444d-8164-b50ceee502bc b30f635f3712212bee48f6ca700f2b64 {"aliquot_tag": "ALQ_444d8a69", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.MethArray.Green.T C3N-01850 GBM Methylation_Array tumor CPT0125260005 203027390081_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 13b7da88-3aad-48fb-b058-342086b9a2bf 8ec9afc431d0fa8ed7cebdd83782debb {"aliquot_tag": "ALQ_ad43c370", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.MethArray.Red.T C3N-01850 GBM Methylation_Array tumor CPT0125260005 203027390081_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 febfe0c8-2b32-4228-8ce8-05d2d4704778 cc4f2b557fa42da23092c5964f32928f {"aliquot_tag": "ALQ_ad43c370", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_92abb7a.miRNA-Seq.S31_L006_R1.T C3N-01850 GBM miRNA-Seq tumor CPT0125270006 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L006_R1_001.unaln.bam 274271010 BAM S31_L006_R1 submitted_unaligned CPTAC3 7060cc1e-8e41-48df-9775-ef103ac0e04e 0445ebf409594b10167ac6e088e3090d {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S31", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_92abb7a.miRNA-Seq.T.hg38 C3N-01850 GBM miRNA-Seq tumor CPT0125270006 f80ec1e0-8672-4149-b200-3e7db59812d5_mirnaseq_gdc_realn.bam 308899234 BAM harmonized CPTAC3 cf67421d-0794-434e-85b7-0d91eab3c4a1 060d4347c64fee090e112a5b150927ca {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_92abb7a.RNA-Seq.chimeric.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.chimeric.gdc_realn.bam 40144139 BAM chimeric harmonized CPTAC3 6e19444c-d775-49d1-8516-d3b463cbdb0f fb8ac6f1ec5cbeae7922b38c22948f84 {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_92abb7a.RNA-Seq.genomic.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.genomic.gdc_realn.bam 8169138578 BAM genomic harmonized CPTAC3 c99bdcb0-df6b-4660-a6d3-43581f12e9f9 eea71896fa90a8ae13d80e1eda627b72 {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_92abb7a.RNA-Seq.S3_L001_R1.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R1_001.fastq.gz 3847474936 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5da572da-3bd7-4c0c-86c3-1e86cc3482af 905279269a1c951e46742584a99e0aca {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_92abb7a.RNA-Seq.S3_L001_R2.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R2_001.fastq.gz 4041617916 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 c11d25ee-91e0-40d1-abfa-cd21ed2df98a 95efb9bbbfea0e6ccdda41d01c89b90b {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_92abb7a.RNA-Seq.transcriptome.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.transcriptome.gdc_realn.bam 9177665078 BAM transcriptome harmonized CPTAC3 571adea5-3548-4a9e-a846-a0c62b7b600e d8e9048fe1581af46165758cfa367000 {"aliquot_tag": "REP_92abb7a", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_9995a6eb.MethArray.Green.T C3N-01850 GBM Methylation_Array tumor CPT0125270009 203219650047_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 986f4467-8c60-472b-b32c-afb23c642578 0f504f4dd24fbed25c9bd5b6c640cd02 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_9995a6eb.MethArray.Red.T C3N-01850 GBM Methylation_Array tumor CPT0125270009 203219650047_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 0acdbc29-be6b-4d09-a132-c64fb24fa5c8 fec8873d517068e0434bb6b7fef336d9 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_9995a6eb.WGS.T C3N-01850 GBM WGS tumor CPT0125270009 CPT0125270009.WholeGenome.RP-1303.bam 78628387429 BAM submitted_aligned CPTAC3 24677690-6d0b-4926-93c8-f52e49a4979f 0bb6a4b6b274ba90bf40d6b33842b176 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_9995a6eb.WGS.T.hg38 C3N-01850 GBM WGS tumor CPT0125270009 437c316c-0135-4d20-98eb-cb6b904b77a8_wgs_gdc_realn.bam 115208540661 BAM harmonized CPTAC3 bdfe3ba9-4bbb-4d85-8a69-d912cc4ffa85 860084bead6e461528c3d946e535e6db {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_9995a6eb.WXS.T C3N-01850 GBM WXS tumor CPT0125270009 CPT0125270009.WholeExome.RP-1303.bam 26533731398 BAM submitted_aligned CPTAC3 4839f427-dcdd-4d03-bbf7-0e288fa1b044 500426a84ec1576aa58c16daf3f45d03 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.REP_9995a6eb.WXS.T.hg38 C3N-01850 GBM WXS tumor CPT0125270009 437c316c-0135-4d20-98eb-cb6b904b77a8_wxs_gdc_realn.bam 35820951839 BAM harmonized CPTAC3 a01b4f54-6cdb-4d63-88cf-ac131ee31526 bc9bc38164fed18539a67b2a88af5015 {"aliquot_tag": "REP_9995a6eb", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01850.WGS.N C3N-01850 GBM WGS blood_normal CPT0125300002 CPT0125300002.WholeGenome.RP-1303.bam 63892207697 BAM submitted_aligned CPTAC3 d4f8975c-9c36-46cd-9e1e-f21bc6909364 0901d15d0f5649360ac919d026de787e {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01850.WGS.N.hg38 C3N-01850 GBM WGS blood_normal CPT0125300002 b0215200-5a5a-4ea7-89c6-09b058ab1ad4_wgs_gdc_realn.bam 94482934419 BAM harmonized CPTAC3 954ecba0-3516-4e98-b878-ca5f14147164 0237e8cdacdf33959d2a54a0bb6c8de0 {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01850.WXS.N C3N-01850 GBM WXS blood_normal CPT0125300002 CPT0125300002.WholeExome.RP-1303.bam 31632024625 BAM submitted_aligned CPTAC3 bb079077-ff91-42be-9a1d-26de9ae73076 b5d5e7051f88ed1e74fbaf03d73e6e9b {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01850.WXS.N.hg38 C3N-01850 GBM WXS blood_normal CPT0125300002 b0215200-5a5a-4ea7-89c6-09b058ab1ad4_wxs_gdc_realn.bam 43588861715 BAM harmonized CPTAC3 a6c2900b-9a85-4717-992c-1101d0a679f6 8fc4b9ca07f66bf99eb104f9a0edf797 {"aliquot_tag": "ALQ_773b70d6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01851.MethArray.Green.T C3N-01851 GBM Methylation_Array tumor CPT0186100006 203219670019_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 cc68905a-51c7-4188-bda7-687ff3b2d47e 7e6067cfd1aa455ed7c410e16a50c74b {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.MethArray.Red.T C3N-01851 GBM Methylation_Array tumor CPT0186100006 203219670019_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 5d099454-d8d6-4d89-ae8a-dfc0ac84cf6b 4978328d6f0af15e9a4d53fe46f0bdc7 {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.miRNA-Seq.S9_L003_R1.T C3N-01851 GBM miRNA-Seq tumor CPT0186100009 181219_UNC31-K00269_0173_BHYGJJBBXX_GATCAG_S9_L003_R1_001.unaln.bam 259629345 BAM S9_L003_R1 submitted_unaligned CPTAC3 fe53c343-784d-4ded-979b-be7a6e11a043 dbc628bac05777e33d5265757ff00117 {"aliquot_tag": "ALQ_d090e00", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.miRNA-Seq.T.hg38 C3N-01851 GBM miRNA-Seq tumor CPT0186100009 6f16f09b-03f9-4fc7-aa21-5da23f9cac5a_mirnaseq_gdc_realn.bam 291718248 BAM harmonized CPTAC3 7d236dc1-54be-467f-853f-23929e9e4203 764d0b54c52bf76563b34d433cd98b86 {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.RNA-Seq.chimeric.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.chimeric.gdc_realn.bam 144568338 BAM chimeric harmonized CPTAC3 389cfe81-01ee-4bb1-8791-046f60653ed0 2f44f965470eeac13e5d0261783d37bf {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.RNA-Seq.genomic.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.genomic.gdc_realn.bam 8235849198 BAM genomic harmonized CPTAC3 175fe42d-f76f-401b-9bdd-1f54ef5c5c8d 8fae163adef27687aa368c48e7ac293a {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.RNA-Seq.S12_L003_R1.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3912185114 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 01bc3d1b-90a8-4045-a317-33d29575b67a c71079aa987d4b8b7b8b55515313194f {"aliquot_tag": "ALQ_d090e00", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.RNA-Seq.S12_L003_R2.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4197953612 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 1054b7d7-4b9b-4700-bdef-e069dab8c849 381ec2241e4c415030fccafa70fc5cd9 {"aliquot_tag": "ALQ_d090e00", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.RNA-Seq.transcriptome.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.transcriptome.gdc_realn.bam 10377982061 BAM transcriptome harmonized CPTAC3 ece7e613-8d57-4f4e-a545-b0b72c8129b0 b23041dc2da8db38631f6e9a312f46a0 {"aliquot_tag": "ALQ_d090e00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.WGS.N C3N-01851 GBM WGS blood_normal CPT0186120002 CPT0186120002.WholeGenome.RP-1303.bam 54343423025 BAM submitted_aligned CPTAC3 35864da6-e266-404c-ae01-c2beb343f37b cf4d224831c8b7e57d8103fa51a3d4ce {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01851.WGS.N.hg38 C3N-01851 GBM WGS blood_normal CPT0186120002 ba85de62-a722-4f2a-a296-c62622195e86_wgs_gdc_realn.bam 77843271265 BAM harmonized CPTAC3 b9ed756a-1b5d-48a3-b82a-807f17803b39 07e4c13aee236cc3d006cc19fb9bfd3f {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01851.WGS.T C3N-01851 GBM WGS tumor CPT0186100006 CPT0186100006.WholeGenome.RP-1303.bam 62236814450 BAM submitted_aligned CPTAC3 0d6943f0-e372-4354-bbbd-e36e1350362d 96dcb5c0b5505de078217983bf37afb9 {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.WGS.T.hg38 C3N-01851 GBM WGS tumor CPT0186100006 e2e5dd96-5ce1-42d5-befd-7ba28a60290a_wgs_gdc_realn.bam 90367252302 BAM harmonized CPTAC3 6124609e-1a61-49f5-a5b9-32a56ca58fb0 20f5dbaa44992e93fcb4ff9f97a8d6f0 {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.WXS.N C3N-01851 GBM WXS blood_normal CPT0186120002 CPT0186120002.WholeExome.RP-1303.bam 28712672824 BAM submitted_aligned CPTAC3 04e7933d-8eb6-415a-913c-83d5a5b1df46 c23917998ee2d64e9051d56b93203351 {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01851.WXS.N.hg38 C3N-01851 GBM WXS blood_normal CPT0186120002 ba85de62-a722-4f2a-a296-c62622195e86_wxs_gdc_realn.bam 39890670249 BAM harmonized CPTAC3 9326193e-0254-4a7e-bbce-b07d8801aa7e e2dcbd94238d9d861e16ef59b24515b6 {"aliquot_tag": "ALQ_e01b84e8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01851.WXS.T C3N-01851 GBM WXS tumor CPT0186100006 CPT0186100006.WholeExome.RP-1303.bam 26997067155 BAM submitted_aligned CPTAC3 50c6b722-2b7a-409c-beaa-b6bc286b601a b67f57a11d1b6b3d54564a41e5f8d3cd {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01851.WXS.T.hg38 C3N-01851 GBM WXS tumor CPT0186100006 e2e5dd96-5ce1-42d5-befd-7ba28a60290a_wxs_gdc_realn.bam 37570116770 BAM harmonized CPTAC3 818e8416-7156-4d77-bded-d089d5b5a015 e28f31753fdd5b842b8bc2d6a7115d8b {"aliquot_tag": "ALQ_9db61391", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.MethArray.Green.T C3N-01852 GBM Methylation_Array tumor CPT0182500006 203219650156_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bf3f946e-66e3-4d4c-95cc-957fab8b4ec0 d11e505ab7e70f44f40cfb1944f59b08 {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.MethArray.Red.T C3N-01852 GBM Methylation_Array tumor CPT0182500006 203219650156_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 6f8c99d9-5243-441f-9a1a-6abed2432125 8a6935b209f2fdb02df7f1bd2e6e05ee {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.miRNA-Seq.S4_L003_R1.T C3N-01852 GBM miRNA-Seq tumor CPT0182500009 181219_UNC31-K00269_0173_BHYGJJBBXX_TGACCA_S4_L003_R1_001.unaln.bam 222345231 BAM S4_L003_R1 submitted_unaligned CPTAC3 1b62bae3-f01a-46da-914e-c1fa59cd41ed 2608cd1d8dd4ec3749aa841b535d672b {"aliquot_tag": "ALQ_62d76805", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.miRNA-Seq.T.hg38 C3N-01852 GBM miRNA-Seq tumor CPT0182500009 da5714a0-9726-4a11-a99f-8e68d3b82749_mirnaseq_gdc_realn.bam 247750334 BAM harmonized CPTAC3 d3f3d950-1438-421f-921c-cc41c261eb79 3fa062348e1f055ae1ca47145aec4d1e {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.RNA-Seq.chimeric.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.chimeric.gdc_realn.bam 187643093 BAM chimeric harmonized CPTAC3 df3221e8-163b-40a3-923e-afd781d89c63 c012e02180c988ebf7cdb62a6ea33bff {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.RNA-Seq.genomic.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.genomic.gdc_realn.bam 8345369856 BAM genomic harmonized CPTAC3 dfa4742f-301e-4847-8eca-168219cca798 1901aee6f7d5ed260b4efdb458737995 {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.RNA-Seq.S4_L001_R1.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3857772720 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 44954158-c233-4b38-ba9f-4478abefe2c8 dc2931ae49faf27c6496e247c81f36cd {"aliquot_tag": "ALQ_62d76805", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.RNA-Seq.S4_L001_R2.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4224237803 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 0710afd1-8d04-4b2b-971a-00b1b4e266ac 1e455e020ce105ab5289c45bc9d88105 {"aliquot_tag": "ALQ_62d76805", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.RNA-Seq.transcriptome.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.transcriptome.gdc_realn.bam 9497050602 BAM transcriptome harmonized CPTAC3 d51bb637-c108-4dd9-af88-438d5ff2730a 461d4dafd80e3afa1efc0d8dbe4f9ccb {"aliquot_tag": "ALQ_62d76805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.WGS.N C3N-01852 GBM WGS blood_normal CPT0182540002 CPT0182540002.WholeGenome.RP-1303.bam 61047247103 BAM submitted_aligned CPTAC3 d95d27b3-f55c-4d48-9e04-b0add1e2f3fb 26239697a474144efe44fd8c02349a8d {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01852.WGS.N.hg38 C3N-01852 GBM WGS blood_normal CPT0182540002 5df57bba-1178-47d7-b964-08219811cd0b_wgs_gdc_realn.bam 87951231995 BAM harmonized CPTAC3 98128dc9-e9f2-49a5-b9d9-a6ed16f2086a bf1effe3fd2466d14d1ef07ed8f1dfdd {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01852.WGS.T C3N-01852 GBM WGS tumor CPT0182500006 CPT0182500006.WholeGenome.RP-1303.bam 53989674487 BAM submitted_aligned CPTAC3 f92deb20-d6d3-48b5-859f-815ba80ebb8c 5cdbe611954b438017b95d26207c873a {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.WGS.T.hg38 C3N-01852 GBM WGS tumor CPT0182500006 5f1e8acb-e97d-4915-9600-cd47b084100e_wgs_gdc_realn.bam 78505161924 BAM harmonized CPTAC3 65b88411-df2b-44c8-9a4c-c97b465fdc7e f1606f50fe1b3c45f64e87ef380142c9 {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.WXS.N C3N-01852 GBM WXS blood_normal CPT0182540002 CPT0182540002.WholeExome.RP-1303.bam 24680940972 BAM submitted_aligned CPTAC3 6f497d13-aced-43ad-9dbb-b07e797c792f 665168da1fe52ceb095c483ed0bf3546 {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01852.WXS.N.hg38 C3N-01852 GBM WXS blood_normal CPT0182540002 5df57bba-1178-47d7-b964-08219811cd0b_wxs_gdc_realn.bam 34285363257 BAM harmonized CPTAC3 089209aa-c35f-4738-8a0b-87c5873224f5 369f12fd332e985b6b76d9ae4de56c2b {"aliquot_tag": "ALQ_85174d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01852.WXS.T C3N-01852 GBM WXS tumor CPT0182500006 CPT0182500006.WholeExome.RP-1303.bam 24064662190 BAM submitted_aligned CPTAC3 11ed4223-de0f-441a-88e7-b451e6b9eb94 adee2250bd642cb800c3febf55e89d25 {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01852.WXS.T.hg38 C3N-01852 GBM WXS tumor CPT0182500006 5f1e8acb-e97d-4915-9600-cd47b084100e_wxs_gdc_realn.bam 33157347070 BAM harmonized CPTAC3 732ec59e-ff14-4150-a059-def7486ab2eb bdeeabbcd952246526df1239e9ce373d {"aliquot_tag": "ALQ_f2687594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.MethArray.Green.T C3N-01856 GBM Methylation_Array tumor CPT0162100006 203028200023_R07C01_Grn.idat 13676232 IDAT Green NA CPTAC3 176fdf47-2881-46dd-b523-24cc0f187472 a30107997b80767c812f05dfb77ca3bf {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.MethArray.Red.T C3N-01856 GBM Methylation_Array tumor CPT0162100006 203028200023_R07C01_Red.idat 13676232 IDAT Red NA CPTAC3 82992075-3e9f-4692-a5b9-6f7bcc319c82 af89966114f1efc90f8a6c9bd455e40f {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.RNA-Seq.chimeric.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.chimeric.gdc_realn.bam 114534263 BAM chimeric harmonized CPTAC3 187edc3e-8d6c-462c-9de7-18e638c098b3 dd8cbaffe58a15124c53c7d533df4879 {"aliquot_tag": "ALQ_eccc3821", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.RNA-Seq.genomic.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.genomic.gdc_realn.bam 9387023326 BAM genomic harmonized CPTAC3 334cc255-9fe6-4191-8e3f-a4c35a1e3808 613d86f1367c683ac10dd69eb1e5cf5c {"aliquot_tag": "ALQ_eccc3821", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.RNA-Seq.S9_L003_R1.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 3816425613 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 ed6bb432-cdeb-4851-860d-43b50894e82a e9da7d6f3ed3b0500883a11c0a13cf50 {"aliquot_tag": "ALQ_eccc3821", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.RNA-Seq.S9_L003_R2.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4200919889 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 9772e608-d91e-4d97-b16c-99dcbdd223e3 5361095fcf7d377785e41e528253c1fe {"aliquot_tag": "ALQ_eccc3821", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.RNA-Seq.transcriptome.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.transcriptome.gdc_realn.bam 10697722091 BAM transcriptome harmonized CPTAC3 d99d910d-6fca-4dee-bcd5-c04be5dde0ea ddf79483ed76ca07d7e0f6e863ca453e {"aliquot_tag": "ALQ_eccc3821", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.WGS.N C3N-01856 GBM WGS blood_normal CPT0162120002 CPT0162120002.WholeGenome.RP-1303.bam 60328961663 BAM submitted_aligned CPTAC3 6767a546-337a-4e3e-abd8-10a7599eafb4 ad0d9b21801eb70c83b99b4e236dcf0c {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01856.WGS.N.hg38 C3N-01856 GBM WGS blood_normal CPT0162120002 f10efa6b-8bd4-4cf3-ac29-40030b28813b_wgs_gdc_realn.bam 88047328190 BAM harmonized CPTAC3 9e90546a-b4c0-4061-ab38-a69473bad093 6a22a3edd4a2b0ee7cc400d69ff62112 {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01856.WGS.T C3N-01856 GBM WGS tumor CPT0162100006 CPT0162100006.WholeGenome.RP-1303.bam 54428926047 BAM submitted_aligned CPTAC3 e3434dbd-9786-48e6-b195-60d604e9f954 54cbc99e8633d7c107f50dbf30968419 {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.WGS.T.hg38 C3N-01856 GBM WGS tumor CPT0162100006 486abf4c-bd38-4ee2-a2bc-87df864d1423_wgs_gdc_realn.bam 79412028971 BAM harmonized CPTAC3 455856d5-1b60-4d78-8591-8aea797add9e 4a7929b7427177a2ad0576efaddbc9f8 {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.WXS.N C3N-01856 GBM WXS blood_normal CPT0162120002 CPT0162120002.WholeExome.RP-1303.bam 27008848602 BAM submitted_aligned CPTAC3 ba317a0d-42db-4036-8d42-b08e8853729d 625c7def36755d85889d7274e7a33cb1 {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01856.WXS.N.hg38 C3N-01856 GBM WXS blood_normal CPT0162120002 f10efa6b-8bd4-4cf3-ac29-40030b28813b_wxs_gdc_realn.bam 36009681356 BAM harmonized CPTAC3 65d4597a-2f75-430e-8e5a-b473be9db3d8 cf2afba6b6a3972350d4c3eff8d2c0e0 {"aliquot_tag": "ALQ_1deb2c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01856.WXS.T C3N-01856 GBM WXS tumor CPT0162100006 CPT0162100006.WholeExome.RP-1303.bam 28124689459 BAM submitted_aligned CPTAC3 1756a335-e596-4b7f-b8ea-ce2b4b46cf41 6f029e6204f53afc4093e8aaae35cc22 {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01856.WXS.T.hg38 C3N-01856 GBM WXS tumor CPT0162100006 486abf4c-bd38-4ee2-a2bc-87df864d1423_wxs_gdc_realn.bam 38716016715 BAM harmonized CPTAC3 357559e1-8bd5-413f-af67-9a9fa574c6fe ab2a8d591070d42dff64bf315ef2239e {"aliquot_tag": "ALQ_7c7325b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.MethArray.Green.T C3N-01857 GBM Methylation_Array tumor CPT0162140007 203027390040_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 0409d8ae-0b9c-49f9-b232-263a9ad5fb7e 875d0512bcc477f31a334729076daa09 {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.MethArray.Red.T C3N-01857 GBM Methylation_Array tumor CPT0162140007 203027390040_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 f6c9d0c2-5f37-4c9e-9bc7-cad49506c63a 91b2d5809425308f09316b80177246cc {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.miRNA-Seq.S11_L001_R1.T C3N-01857 GBM miRNA-Seq tumor CPT0162140010 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L001_R1_001.unaln.bam 253970312 BAM S11_L001_R1 submitted_unaligned CPTAC3 fce14d60-f061-4b9d-87a7-d9f3bead7b80 03133ff433632889cc276135cfa5c1be {"aliquot_tag": "ALQ_798b1704", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.miRNA-Seq.T.hg38 C3N-01857 GBM miRNA-Seq tumor CPT0162140010 d7454085-f11b-48e0-9e64-5897f79af354_mirnaseq_gdc_realn.bam 281095814 BAM harmonized CPTAC3 3654a2cc-16d9-4660-8fa5-eed7efba3415 ccbcdafe9d38349db21250577472fb07 {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.RNA-Seq.chimeric.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.chimeric.gdc_realn.bam 150041169 BAM chimeric harmonized CPTAC3 44a5b3ce-6ab1-4818-afbc-6cc78503ee1c 83e65bc05836e7bcc59ca2f8d6c6be15 {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.RNA-Seq.genomic.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.genomic.gdc_realn.bam 9255743064 BAM genomic harmonized CPTAC3 6229ca6d-1420-440d-9e42-7887697ae85f c98f44ca1360130969daa6f122a05f4a {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.RNA-Seq.S1_L006_R1.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R1_001.fastq.gz 4388086445 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 75787440-f3e5-48f8-959f-9ff711677d3d 9a40add875717147682d0936339b7d6a {"aliquot_tag": "ALQ_798b1704", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.RNA-Seq.S1_L006_R2.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R2_001.fastq.gz 5012516281 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 5d5a71db-4335-4e75-bdbd-3f23655710be 2df56b5f6c60541ecb1702981ab7c246 {"aliquot_tag": "ALQ_798b1704", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.RNA-Seq.transcriptome.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.transcriptome.gdc_realn.bam 9728345516 BAM transcriptome harmonized CPTAC3 e1403206-c003-4e75-b1da-2020b8295a4b a7863567ef9fe8547f7f2a9cf4f02fef {"aliquot_tag": "ALQ_798b1704", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.WGS.N C3N-01857 GBM WGS blood_normal CPT0162170002 CPT0162170002.WholeGenome.RP-1303.bam 64143017590 BAM submitted_aligned CPTAC3 c9c8b532-e688-453b-8cd5-3b3571ecdf85 2f058658f670d11d233839aab9061856 {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01857.WGS.N.hg38 C3N-01857 GBM WGS blood_normal CPT0162170002 3d771b8a-a107-41cc-b850-dd9639359d4e_wgs_gdc_realn.bam 92384124382 BAM harmonized CPTAC3 159e558f-428b-40aa-b176-ec3aeed9cd15 879106d632fd47ebc5b0730da33717e6 {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01857.WGS.T C3N-01857 GBM WGS tumor CPT0162140007 CPT0162140007.WholeGenome.RP-1303.bam 54854216548 BAM submitted_aligned CPTAC3 285a96cc-b3a8-40a6-8809-d6ce5db0040f a745598ae3a7fbbb0712d358c6b1ac8f {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.WGS.T.hg38 C3N-01857 GBM WGS tumor CPT0162140007 d41f100d-be16-400e-9596-2062c6eaad67_wgs_gdc_realn.bam 80021318021 BAM harmonized CPTAC3 29d2a834-5c30-49a1-ab88-3f601c274532 0bd2cb7be3b1cc985c6a999f8bc72674 {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.WXS.N C3N-01857 GBM WXS blood_normal CPT0162170002 CPT0162170002.WholeExome.RP-1303.bam 24663544407 BAM submitted_aligned CPTAC3 b5d70c98-ff36-443c-adfd-3cfcfbe26a04 65c58ba0d2514953a719562e1c6979bc {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01857.WXS.N.hg38 C3N-01857 GBM WXS blood_normal CPT0162170002 3d771b8a-a107-41cc-b850-dd9639359d4e_wxs_gdc_realn.bam 34072506241 BAM harmonized CPTAC3 55bd46d2-4c8d-47ed-85af-62a68f8eeebd eec73b0cdf8fa5c4a40af2a8ec97fa9c {"aliquot_tag": "ALQ_c93e3db9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01857.WXS.T C3N-01857 GBM WXS tumor CPT0162140007 CPT0162140007.WholeExome.RP-1303.bam 22493029863 BAM submitted_aligned CPTAC3 e3745e2c-e529-4f77-a897-936662fb17fc d31b9cf862589dbb780f771b129b1406 {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01857.WXS.T.hg38 C3N-01857 GBM WXS tumor CPT0162140007 d41f100d-be16-400e-9596-2062c6eaad67_wxs_gdc_realn.bam 32063065543 BAM harmonized CPTAC3 38d4a1f6-dd44-47bd-87ca-9045c0611ca6 a53d9b84d180f62e01c9edfc0a10323e {"aliquot_tag": "ALQ_fef4b3e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.MethArray.Green.T C3N-01858 HNSCC Methylation_Array tumor CPT0163840006 203220070154_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ab4c691c-f98d-4439-a07a-7899baee4113 9ef208fecbb5dff2ea482d33dd96fc16 {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.MethArray.Red.T C3N-01858 HNSCC Methylation_Array tumor CPT0163840006 203220070154_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 4a7571f2-511b-4af3-9b02-18b04cf34c2c af04bd971dc405121552132266b4542f {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.miRNA-Seq.S33_L002_R1.T C3N-01858 HNSCC miRNA-Seq tumor CPT0163840009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L002_R1_001.unaln.bam 207901865 BAM S33_L002_R1 submitted_unaligned CPTAC3 4ccc1ebf-8248-4795-801a-cd143b77b1ab 3e83b0b6d194f7824b14ad542b1c65e6 {"aliquot_tag": "ALQ_9834c49d", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.miRNA-Seq.T.hg38 C3N-01858 HNSCC miRNA-Seq tumor CPT0163840009 13ed8cd1-082e-496c-bc11-6e35c5a6ba6d_mirnaseq_gdc_realn.bam 239186255 BAM harmonized CPTAC3 745ce889-7926-4e55-9b2d-9bc9da32ac8b 5f5f9ae46bd30b1e180bb56aee5d87c8 {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.chimeric.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.chimeric.gdc_realn.bam 78424555 BAM chimeric harmonized CPTAC3 d9ada9fb-b35c-4a6e-a964-1a00fa1c0949 d79cabcd03d551e8985fee260d1bd084 {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.chimeric.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.chimeric.gdc_realn.bam 179341851 BAM chimeric harmonized CPTAC3 72eee029-2d5f-482b-bcc6-afb56a5e645c f3a2bde32dd00804515a813e0c6f6ca9 {"aliquot_tag": "ALQ_ab908ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.genomic.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.genomic.gdc_realn.bam 6209656160 BAM genomic harmonized CPTAC3 834109e1-d544-4251-aae1-5e4351b2528d ef83c1e9d3f46519ffc2ab6777ba1e83 {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.genomic.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.genomic.gdc_realn.bam 9246584694 BAM genomic harmonized CPTAC3 7b974187-2778-40bd-80a0-f28870ef72bb 427ee056fe728c8c4bbcbd138b4a7cb7 {"aliquot_tag": "ALQ_ab908ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.S3_L001_R1.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R1_001.fastq.gz 2878963606 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 bae560c8-d7af-44f5-965a-da697a6e0e1c 0ccac52b9beb7d9c33907d7985e0106b {"aliquot_tag": "ALQ_9834c49d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.S3_L001_R2.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R2_001.fastq.gz 3196094888 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 9f3e8507-33fa-4ac0-8a7b-3254f592d3b0 dbce8af3eab97e8f86454eed347aa0a4 {"aliquot_tag": "ALQ_9834c49d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.S49_R1.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R1_001.fastq.gz 6405948347 FASTQ S49_R1 submitted_unaligned CPTAC3 bf3622fe-6ee6-4a63-88f7-696916e75a5d 3aca44fb859358a82936412944b2e8c2 {"aliquot_tag": "ALQ_ab908ffe", "sample": "S49", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.S49_R2.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R2_001.fastq.gz 6600620434 FASTQ S49_R2 submitted_unaligned CPTAC3 74695714-ccc5-4c1e-bbbd-03c1f3f37dd3 37929447c4b7984b62435b9d9eca21de {"aliquot_tag": "ALQ_ab908ffe", "sample": "S49", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.transcriptome.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.transcriptome.gdc_realn.bam 7978032881 BAM transcriptome harmonized CPTAC3 1c741da1-2e45-4e6c-87c9-e128ad60e382 8e4c6d65b4a55676bca4adbf5c2339fc {"aliquot_tag": "ALQ_9834c49d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.RNA-Seq.transcriptome.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.transcriptome.gdc_realn.bam 5418417712 BAM transcriptome harmonized CPTAC3 22cdfc5e-9345-49a8-9d7a-5a76d9e6ea69 55cd9d84b1003511c83c390512182b2a {"aliquot_tag": "ALQ_ab908ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.WGS.N C3N-01858 HNSCC WGS blood_normal CPT0163900002 CPT0163900002.WholeGenome.RP-1303.bam 57736901249 BAM submitted_aligned CPTAC3 c62f6004-2986-4bb7-b910-9578621c9f7a 23b72dbfab783d18c10192fc0d9a1828 {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01858.WGS.N.hg38 C3N-01858 HNSCC WGS blood_normal CPT0163900002 df6e28a1-8dd7-481b-b12a-c8ebd2fd973d_wgs_gdc_realn.bam 85073140408 BAM harmonized CPTAC3 86358fb6-9951-4ce5-8868-46b52bc57403 1075c0b7df3954634e7bdc8345c48e01 {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01858.WGS.T C3N-01858 HNSCC WGS tumor CPT0163840006 CPT0163840006.WholeGenome.RP-1303.bam 80355628566 BAM submitted_aligned CPTAC3 be7670fa-a7c8-4cca-b02c-dac64f280c26 7425ae22e83ecf73e4e6ea7d74931a3b {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.WGS.T.hg38 C3N-01858 HNSCC WGS tumor CPT0163840006 a73a9c1a-c8de-4763-8f7a-0e85dd18e9a3_wgs_gdc_realn.bam 119155065295 BAM harmonized CPTAC3 3967deb8-a165-43e2-8d6b-6871e4866dd6 22212248efc834ee9438d517a12a309f {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.WXS.N C3N-01858 HNSCC WXS blood_normal CPT0163900002 CPT0163900002.WholeExome.RP-1303.bam 27404724523 BAM submitted_aligned CPTAC3 c3aff288-2177-41bb-b262-e445ac983869 2c651351fdbd72133b4f052ee1b2112a {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01858.WXS.N.hg38 C3N-01858 HNSCC WXS blood_normal CPT0163900002 df6e28a1-8dd7-481b-b12a-c8ebd2fd973d_wxs_gdc_realn.bam 37424266696 BAM harmonized CPTAC3 444f9c9b-ab29-4b6e-ae6e-27a01d059de3 a619601ada6c641fca6151cda19607a3 {"aliquot_tag": "ALQ_313a6870", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01858.WXS.T C3N-01858 HNSCC WXS tumor CPT0163840006 CPT0163840006.WholeExome.RP-1303.bam 20654739122 BAM submitted_aligned CPTAC3 6cbc4099-eae8-4583-bbb7-3408cb59319f ed000faa7f5021df8238fc4586f0debd {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01858.WXS.T.hg38 C3N-01858 HNSCC WXS tumor CPT0163840006 a73a9c1a-c8de-4763-8f7a-0e85dd18e9a3_wxs_gdc_realn.bam 28605244130 BAM harmonized CPTAC3 fc3cd5c8-68ba-4a45-92cc-305b2244f8c8 1ca06411511e6ca97c89786463777510 {"aliquot_tag": "ALQ_88bd90c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.MethArray.Green.T C3N-01859 HNSCC Methylation_Array tumor CPT0163910006 203219640047_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 cf312fc8-ecfd-4069-b936-fb81b40de85e 6f1f89e51639f11d78e609fd09e27d5e {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.MethArray.Red.T C3N-01859 HNSCC Methylation_Array tumor CPT0163910006 203219640047_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 7bd51f73-8827-4d69-a140-0a02a285bfa6 05e05b646cff440ceef3fc3ef473beec {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.miRNA-Seq.S34_L002_R1.T C3N-01859 HNSCC miRNA-Seq tumor CPT0163910009 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L002_R1_001.unaln.bam 192200176 BAM S34_L002_R1 submitted_unaligned CPTAC3 77db198e-3ac3-40ed-956e-b667e5a5c3cc 8b24d11b512841edf9bbd37ee8136eee {"aliquot_tag": "ALQ_9b889848", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.miRNA-Seq.T.hg38 C3N-01859 HNSCC miRNA-Seq tumor CPT0163910009 e133fcde-9525-40e1-9d94-8544fb4399d6_mirnaseq_gdc_realn.bam 214133370 BAM harmonized CPTAC3 f79a90b2-0352-4fe7-888b-64841b83618e 2451d6052645ffd6cdc4244449d0361c {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.chimeric.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.chimeric.gdc_realn.bam 94613484 BAM chimeric harmonized CPTAC3 b7348be1-22a7-43e1-bc13-cac4c3d8eb9a e0fe8e3a877d2ae984440347f0c5e7fd {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.chimeric.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.chimeric.gdc_realn.bam 143953918 BAM chimeric harmonized CPTAC3 daa0492f-3ee0-4136-986d-a865195dfd98 5e57c0f5276a69cfc9f8e6b1a96f30c6 {"aliquot_tag": "ALQ_6ddc3e2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.genomic.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.genomic.gdc_realn.bam 6488743473 BAM genomic harmonized CPTAC3 a6eb0a89-ca2b-4e01-9424-79387b0d6df2 5b970ac8226b725bf6085cbf3e5297c0 {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.genomic.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.genomic.gdc_realn.bam 8520904033 BAM genomic harmonized CPTAC3 fae85f0a-9056-4b4a-b7be-bb8431a64e2e d7b635cd475825d6ea618161fd6e6fd8 {"aliquot_tag": "ALQ_6ddc3e2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.S2_L001_R1.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3033398658 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 7178c94c-fbf8-4692-bec4-3147049203de cf37cecc2fcc9b6e5eab3513e9a5c350 {"aliquot_tag": "ALQ_9b889848", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.S2_L001_R2.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R2_001.fastq.gz 3331327045 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 3e2513e3-1bbd-4e76-8e87-cc7e44061857 f70daf1825ceec8079757136556cc36e {"aliquot_tag": "ALQ_9b889848", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.S37_R1.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R1_001.fastq.gz 5710099415 FASTQ S37_R1 submitted_unaligned CPTAC3 acab6dfb-8de0-454f-8143-8c00d1e682f2 b6148be5429495ec590ffd6e6ccfc2ce {"aliquot_tag": "ALQ_6ddc3e2a", "sample": "S37", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.S37_R2.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R2_001.fastq.gz 5912647006 FASTQ S37_R2 submitted_unaligned CPTAC3 16de1515-fe26-412f-a724-03e7953e7dc4 a78dfee37287b2eb5f58bc36e57a9a1b {"aliquot_tag": "ALQ_6ddc3e2a", "sample": "S37", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.transcriptome.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.transcriptome.gdc_realn.bam 8404711687 BAM transcriptome harmonized CPTAC3 3014901c-9947-4e43-ae64-ebd6953b6910 7adc78e06287f0d1707cad6babc8d6bb {"aliquot_tag": "ALQ_9b889848", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.RNA-Seq.transcriptome.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.transcriptome.gdc_realn.bam 6872802608 BAM transcriptome harmonized CPTAC3 2cf021fe-f402-401d-a7a0-1f5e8c8ca6da 45d326b534e7d4c8bebbbe1719e16337 {"aliquot_tag": "ALQ_6ddc3e2a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.WGS.N C3N-01859 HNSCC WGS blood_normal CPT0163950002 CPT0163950002.WholeGenome.RP-1303.bam 70929559318 BAM submitted_aligned CPTAC3 aaf6fe09-cced-4880-93c3-34862faf3acd 26295a378bb6c8553fcc48aae10a0631 {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01859.WGS.N.hg38 C3N-01859 HNSCC WGS blood_normal CPT0163950002 7450df27-83a7-4d2a-ba70-02486c38bc94_wgs_gdc_realn.bam 103818412879 BAM harmonized CPTAC3 1e6ad2f5-ab4c-4b06-badd-2d0d246a52bf 0cf2325efb7b2288915dc7150a0b7800 {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01859.WGS.T C3N-01859 HNSCC WGS tumor CPT0163910006 CPT0163910006.WholeGenome.RP-1303.bam 62525738183 BAM submitted_aligned CPTAC3 4a576f53-3615-4ed4-bc63-8eca44038e13 ab7a16a042157b725a8acfb4d13f354b {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.WGS.T.hg38 C3N-01859 HNSCC WGS tumor CPT0163910006 03fc4fbc-1565-4953-b79d-6a7cd399e855_wgs_gdc_realn.bam 92275718220 BAM harmonized CPTAC3 a5713065-22b3-429c-8810-79756ea50ed1 987d291566bdcbf8c7082daff6fea0d1 {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.WXS.N C3N-01859 HNSCC WXS blood_normal CPT0163950002 CPT0163950002.WholeExome.RP-1303.bam 23554721633 BAM submitted_aligned CPTAC3 e4cff96a-f4e1-4488-a98b-af93aa23459a 2e3641b358e4c0f9b8b7dc715ab1d1e5 {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01859.WXS.N.hg38 C3N-01859 HNSCC WXS blood_normal CPT0163950002 7450df27-83a7-4d2a-ba70-02486c38bc94_wxs_gdc_realn.bam 32588479678 BAM harmonized CPTAC3 81abe19f-ebd3-44de-ad1d-5102988676a0 5947afbcbc0ea5b5c6a0c441790f63ac {"aliquot_tag": "ALQ_f9dae700", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01859.WXS.T C3N-01859 HNSCC WXS tumor CPT0163910006 CPT0163910006.WholeExome.RP-1303.bam 20261666379 BAM submitted_aligned CPTAC3 6549446e-94d9-4ddc-9415-ae8e168dabc6 f35e2ac3485edbe44fbaee804bbef10d {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01859.WXS.T.hg38 C3N-01859 HNSCC WXS tumor CPT0163910006 03fc4fbc-1565-4953-b79d-6a7cd399e855_wxs_gdc_realn.bam 28632766504 BAM harmonized CPTAC3 826d7093-20a4-4e54-99a4-ad90e50f0f2f 6e9c96737b4e578d07113b102662468b {"aliquot_tag": "ALQ_b3785d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01871.MethArray.Green.T C3N-01871 UCEC Methylation_Array tumor CPT0117010007 203219640160_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 02f46409-96cb-444d-936a-5cbf8767a7ef ee0428b2a326969684f6890aed04c341 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.MethArray.Red.T C3N-01871 UCEC Methylation_Array tumor CPT0117010007 203219640160_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 865d1bce-ca5d-46c3-af86-6b4ae094d8e9 8dff64c09dca93d5429973fbbde85a92 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.miRNA-Seq.S1_L004_R1.T C3N-01871 UCEC miRNA-Seq tumor CPT0117010010 190108_UNC31-K00269_0176_AHYGLVBBXX_ATCACG_S1_L004_R1_001.unaln.bam 182866974 BAM S1_L004_R1 submitted_unaligned CPTAC3 c5b082a0-f7be-4823-97bd-70af61e01373 343aefeaedec340bbe92562e98911520 {"aliquot_tag": "ALQ_22ca6d6f", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.miRNA-Seq.T.hg38 C3N-01871 UCEC miRNA-Seq tumor CPT0117010010 d9d92907-77f7-4606-962b-912a75f4c70b_mirnaseq_gdc_realn.bam 204680613 BAM harmonized CPTAC3 16290019-d482-4f0f-842d-6479772d8fef fd0dafcd2a4c7ac6c8a065b079e98193 {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.RNA-Seq.chimeric.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.chimeric.gdc_realn.bam 86828047 BAM chimeric harmonized CPTAC3 fc6f0f94-eba8-4b11-bf03-367d1423c0d7 f791e6fb9c1dd2474e72039fcf1ce147 {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.RNA-Seq.genomic.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.genomic.gdc_realn.bam 10210381649 BAM genomic harmonized CPTAC3 cadac63a-657d-483b-8325-0916bb8415ce 4f64fa7dd86a7fc809a2a77e4168b30f {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.RNA-Seq.S7_L003_R1.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R1_001.fastq.gz 5112789242 FASTQ S7_L003_R1 submitted_unaligned CPTAC3 c582219c-ff38-4076-b3b3-ddf8067c82b1 aa6dfb9109ed36678efea7aa1fddc1a1 {"aliquot_tag": "ALQ_22ca6d6f", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.RNA-Seq.S7_L003_R2.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R2_001.fastq.gz 5039604970 FASTQ S7_L003_R2 submitted_unaligned CPTAC3 5ffcee57-ae42-445e-9a13-7ccc027dd62d 0ad50d433e5ae0caaf2fb9cb3d277f52 {"aliquot_tag": "ALQ_22ca6d6f", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.RNA-Seq.transcriptome.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.transcriptome.gdc_realn.bam 12155849430 BAM transcriptome harmonized CPTAC3 4913e64b-c853-4f27-bf59-160e2d5a7ed0 8386c7c09b76f26eba2010ca651533f8 {"aliquot_tag": "ALQ_22ca6d6f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.WGS.N C3N-01871 UCEC WGS blood_normal CPT0117110002 CPT0117110002.WholeGenome.RP-1303.bam 64308827611 BAM submitted_aligned CPTAC3 0bc9a0c6-0d57-4cfd-b767-0518abdc0b9f bd1ba3aa346ce6bc91913d93c4ac0fb3 {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01871.WGS.N.hg38 C3N-01871 UCEC WGS blood_normal CPT0117110002 15e2d9c7-449e-4c2d-be94-23fd0be95b3f_wgs_gdc_realn.bam 93851568090 BAM harmonized CPTAC3 3a600d57-b013-4ed1-897a-286cd286bbd4 7356ff4c015db76d83d51debdeb890fe {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01871.WGS.T C3N-01871 UCEC WGS tumor CPT0117010007 CPT0117010007.WholeGenome.RP-1303.bam 63503042836 BAM submitted_aligned CPTAC3 70be389b-0730-4f09-9eab-fdfdaaff39bc d81be6c39ca0b59688a6bfb790b15ffc {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.WGS.T.hg38 C3N-01871 UCEC WGS tumor CPT0117010007 5c315eed-6b0f-47db-8b93-14cb02f66a3f_wgs_gdc_realn.bam 94526264448 BAM harmonized CPTAC3 d419dd7f-9117-4372-93c6-019549d829f0 73e800d26815b9c9b933c02d97062565 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.WXS.N C3N-01871 UCEC WXS blood_normal CPT0117110002 CPT0117110002.WholeExome.RP-1303.bam 23130062093 BAM submitted_aligned CPTAC3 face7da5-76e6-4505-b783-7950a13bcf51 bfec7efd392b88d01ac5bae6429c0afe {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01871.WXS.N.hg38 C3N-01871 UCEC WXS blood_normal CPT0117110002 15e2d9c7-449e-4c2d-be94-23fd0be95b3f_wxs_gdc_realn.bam 32080876089 BAM harmonized CPTAC3 ecf9bb34-f497-45c8-a677-f7ef0d4983f0 2cc613e8312e8aedd1900313f9626157 {"aliquot_tag": "ALQ_1e83eea7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01871.WXS.T C3N-01871 UCEC WXS tumor CPT0117010007 CPT0117010007.WholeExome.RP-1303.bam 37199224018 BAM submitted_aligned CPTAC3 8f73a828-8bca-42ef-b0dc-5dcddc739d01 c2171bde1fc95ef3e446fe15fe8f10f9 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01871.WXS.T.hg38 C3N-01871 UCEC WXS tumor CPT0117010007 5c315eed-6b0f-47db-8b93-14cb02f66a3f_wxs_gdc_realn.bam 52772478841 BAM harmonized CPTAC3 ea17b302-18ac-40ee-a024-22132a9b9708 8251f2154b31a405c63b3aba3bb58a83 {"aliquot_tag": "ALQ_a5b5c98d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.MethArray.Green.T C3N-01873 UCEC Methylation_Array tumor CPT0117230006 203219640157_R02C01_Grn.idat 13676227 IDAT Green NA CPTAC3 486fc880-bb47-4703-a1bb-fa77aea4976d a011fbdb3fc38ae5f59cd88175aa1b47 {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.MethArray.Red.T C3N-01873 UCEC Methylation_Array tumor CPT0117230006 203219640157_R02C01_Red.idat 13676227 IDAT Red NA CPTAC3 c0c8ec2f-0076-4caf-b82c-2ee469b703cf a7e4ecf5393089c0bc478c3486240569 {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.miRNA-Seq.S26_L005_R1.T C3N-01873 UCEC miRNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGAGC_S26_L005_R1_001.unaln.bam 106503751 BAM S26_L005_R1 submitted_unaligned CPTAC3 e3eb4a88-12a4-4d1b-b77e-611241a02bec f7fdbe1ee5a6d392c482033da553d865 {"aliquot_tag": "ALQ_750516e1", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.miRNA-Seq.T.hg38 C3N-01873 UCEC miRNA-Seq tumor CPT0117230009 7073ab2d-0ad5-46e4-a343-5aaf22655e1e_mirnaseq_gdc_realn.bam 117207801 BAM harmonized CPTAC3 bbee6544-713f-4666-a873-31cbeedb1704 40016184b7968939c156798bb2360139 {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.RNA-Seq.chimeric.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.chimeric.gdc_realn.bam 60486315 BAM chimeric harmonized CPTAC3 6df890ce-f2d0-48af-8614-84dbde3f9304 b46790842b431b5f86b75ef40e59e3ab {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.RNA-Seq.genomic.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.genomic.gdc_realn.bam 10402417053 BAM genomic harmonized CPTAC3 12555655-d4e6-4a32-b773-a6b5faf3d4c8 f7c2158735f7332e9c162bc1a14628b4 {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.RNA-Seq.S6_L002_R1.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4434120095 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 f90fd46f-b7f0-4fda-8263-3474ed77d522 466d01ebaa1d4bf6f1d1e227b4dbbf7a {"aliquot_tag": "ALQ_750516e1", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.RNA-Seq.S6_L002_R2.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4662189253 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 47e0c561-0024-40fa-8129-855e50f14a27 fb39eb073b484b6ea2a0262e327cdb48 {"aliquot_tag": "ALQ_750516e1", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.RNA-Seq.transcriptome.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.transcriptome.gdc_realn.bam 9604799535 BAM transcriptome harmonized CPTAC3 6cf3c17b-7a67-44f9-b611-8fba83f6787a 8e64ccb92734bd8fed5a9ee7affe6e9a {"aliquot_tag": "ALQ_750516e1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.WGS.N C3N-01873 UCEC WGS blood_normal CPT0117290002 CPT0117290002.WholeGenome.RP-1303.bam 67286218104 BAM submitted_aligned CPTAC3 26232769-3b76-487f-91ff-5501dfb82799 544e097faa6797d3ad3fe23032699d07 {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01873.WGS.N.hg38 C3N-01873 UCEC WGS blood_normal CPT0117290002 61f6b660-fa1d-401a-a8ea-230aef418f5b_wgs_gdc_realn.bam 94793179025 BAM harmonized CPTAC3 9468382d-89c9-4215-8319-a9e24967233a 0da58781b78ada0ffa3469b832a3ed9c {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01873.WGS.T C3N-01873 UCEC WGS tumor CPT0117230006 CPT0117230006.WholeGenome.RP-1303.bam 60859743768 BAM submitted_aligned CPTAC3 cc578a23-ea82-4365-a13f-ca77a7ed2f03 362e7349ff2f678fd3809df5ad9c64c6 {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.WGS.T.hg38 C3N-01873 UCEC WGS tumor CPT0117230006 965732fd-4da5-4925-a4c1-ad147d95b957_wgs_gdc_realn.bam 89034011131 BAM harmonized CPTAC3 639cdd04-1335-4199-99d9-5bb73a2f660e e686f1605e2acc9fcde623722d8bf85e {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.WXS.N C3N-01873 UCEC WXS blood_normal CPT0117290002 CPT0117290002.WholeExome.RP-1303.bam 29940338494 BAM submitted_aligned CPTAC3 3329a133-6e46-4b3a-93f4-0d8e1fbef9aa 509e19ce18f27f61a72387e25dcb65d9 {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01873.WXS.N.hg38 C3N-01873 UCEC WXS blood_normal CPT0117290002 61f6b660-fa1d-401a-a8ea-230aef418f5b_wxs_gdc_realn.bam 41139403640 BAM harmonized CPTAC3 f84138ae-03a0-4dcc-ba44-201f8edbfc3e 13ba837865e89371186801ebbc9200bd {"aliquot_tag": "ALQ_a867d7c8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01873.WXS.T C3N-01873 UCEC WXS tumor CPT0117230006 CPT0117230006.WholeExome.RP-1303.bam 24655158371 BAM submitted_aligned CPTAC3 ba989767-e372-42f6-a6e2-e5784133b604 2b28bf9111db30784d571c42026f761f {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01873.WXS.T.hg38 C3N-01873 UCEC WXS tumor CPT0117230006 965732fd-4da5-4925-a4c1-ad147d95b957_wxs_gdc_realn.bam 34012236917 BAM harmonized CPTAC3 26653a1d-51eb-497f-b61e-95cef65b8608 2d7cc78367935f47143839f56dfcaacc {"aliquot_tag": "ALQ_e5ba0b70", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.MethArray.Green.T C3N-01874 UCEC Methylation_Array tumor CPT0117300006 203219640068_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ef8cc373-e9ef-455c-bcad-cf2aa38f17b7 aec7fc8737cb27551d23cbe2e0085de0 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.MethArray.Red.T C3N-01874 UCEC Methylation_Array tumor CPT0117300006 203219640068_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 57aaedbd-7d4e-4292-ad60-2228186349db 0ff5498977a1b0bdc22954aece614580 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.miRNA-Seq.S27_L005_R1.T C3N-01874 UCEC miRNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATTCCT_S27_L005_R1_001.unaln.bam 209066989 BAM S27_L005_R1 submitted_unaligned CPTAC3 a770269f-9532-47fd-9327-7f07669f3360 375b7249e783f096d204466dee238efc {"aliquot_tag": "ALQ_f9f9bf94", "sample": "S27", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.miRNA-Seq.T.hg38 C3N-01874 UCEC miRNA-Seq tumor CPT0117300009 83747dfe-22cf-466f-a294-69f03341d35b_mirnaseq_gdc_realn.bam 225636049 BAM harmonized CPTAC3 aa44751e-8ecc-4cfd-ad1c-a993a9755dca 5e7c1a1d822d1bfb379d1274ad050905 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.chimeric.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.chimeric.gdc_realn.bam 80580748 BAM chimeric harmonized CPTAC3 de9429c4-5320-49bb-a507-da14a39d07d5 793322cb24cebc2b56507cfeca15bb83 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.chimeric.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.chimeric.gdc_realn.bam 90342724 BAM chimeric harmonized CPTAC3 c2167960-43d5-4d2a-9b66-a3f8d5efceee eb813b2cc36bd548fe438b95128f7167 {"aliquot_tag": "ALQ_f3f21fb3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.genomic.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.genomic.gdc_realn.bam 9290898116 BAM genomic harmonized CPTAC3 8f4e8f09-3a1a-4f8f-b44b-0e22c6982d63 0d5cefb92be6f6c643123bd8f9d0edb0 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.genomic.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.genomic.gdc_realn.bam 5421209492 BAM genomic harmonized CPTAC3 6f32e48b-d84c-40fc-8d54-705ad3c0ca18 294cd6826138713a5f11643d1a5845d5 {"aliquot_tag": "ALQ_f3f21fb3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.S8_L002_R1.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R1_001.fastq.gz 4265998735 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 d97a854b-3984-40dd-b01e-5810d95b0d69 58e1e13c7a593fb761f18f64d88da0b9 {"aliquot_tag": "ALQ_f9f9bf94", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.S8_L002_R2.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R2_001.fastq.gz 4481104167 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 3e8f5bf6-4e83-4d41-966c-627b192d3cad 1c9944c83cdef55e89cd643e6ec65729 {"aliquot_tag": "ALQ_f9f9bf94", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.S95_R1.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R1_001.fastq.gz 2913411714 FASTQ S95_R1 submitted_unaligned CPTAC3 cb567b7a-690d-4c0b-bf09-a463ca1b0459 b5d1ad424a16c7cab7cc7f9c94b059b8 {"aliquot_tag": "ALQ_f3f21fb3", "sample": "S95", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.S95_R2.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R2_001.fastq.gz 2999780568 FASTQ S95_R2 submitted_unaligned CPTAC3 501a7f08-f065-4649-88d3-8bf8325ef5cb f35d4119cce2e6b197bfd4800804b309 {"aliquot_tag": "ALQ_f3f21fb3", "sample": "S95", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.transcriptome.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.transcriptome.gdc_realn.bam 9529150511 BAM transcriptome harmonized CPTAC3 f3188d5b-c6c7-4bc7-81ca-b0e4c1c18787 1a8f2c99bab0385614a41d5845af8a47 {"aliquot_tag": "ALQ_f9f9bf94", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.RNA-Seq.transcriptome.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.transcriptome.gdc_realn.bam 2528218415 BAM transcriptome harmonized CPTAC3 71157d6e-c181-4ea2-916c-010416f42e71 a8249e3fc4de88bf3c474332bffb2918 {"aliquot_tag": "ALQ_f3f21fb3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.WGS.N C3N-01874 UCEC WGS blood_normal CPT0117360002 CPT0117360002.WholeGenome.RP-1303.bam 64878429530 BAM submitted_aligned CPTAC3 57893ab6-fb82-4b70-b2bd-eb0225caee32 d74575a7d2b016365e9523923e1454a5 {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01874.WGS.N.hg38 C3N-01874 UCEC WGS blood_normal CPT0117360002 4b3d1903-bd55-4ecc-8c23-78b99d158758_wgs_gdc_realn.bam 93270235466 BAM harmonized CPTAC3 85bdde21-c545-4344-82cf-6d03f5dadcb8 57d5ae01960faa3bc867cf4ab629bf48 {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01874.WGS.T C3N-01874 UCEC WGS tumor CPT0117300006 CPT0117300006.WholeGenome.RP-1303.bam 61255942774 BAM submitted_aligned CPTAC3 b15bc90f-0fbe-4924-9796-327420b3ae04 5bf72c43db6e459b9d40d8717614e69d {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.WGS.T.hg38 C3N-01874 UCEC WGS tumor CPT0117300006 f7d28c63-6c3f-4eb3-80f7-af6930366f7f_wgs_gdc_realn.bam 89512305135 BAM harmonized CPTAC3 7dede6ac-4621-4493-8324-c6ff467c3777 f6d84c9f0836f84ff325e17d7fe09cc2 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.WXS.N C3N-01874 UCEC WXS blood_normal CPT0117360002 CPT0117360002.WholeExome.RP-1303.bam 25527616812 BAM submitted_aligned CPTAC3 24444fa5-89ca-4533-a6a3-662c6c2daf76 fa4bd5fcc84929a0edaa19549e759632 {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01874.WXS.N.hg38 C3N-01874 UCEC WXS blood_normal CPT0117360002 4b3d1903-bd55-4ecc-8c23-78b99d158758_wxs_gdc_realn.bam 35094825374 BAM harmonized CPTAC3 010baa2e-162b-455e-bf39-760ab3a978f3 1324e045929fd21af02cf56a8467dc6a {"aliquot_tag": "ALQ_e16b93bc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01874.WXS.T C3N-01874 UCEC WXS tumor CPT0117300006 CPT0117300006.WholeExome.RP-1303.bam 25276886349 BAM submitted_aligned CPTAC3 640148bc-3c85-4f53-a551-411e57d31bb5 368ec386a6fc58505eae7c9f95c485f7 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01874.WXS.T.hg38 C3N-01874 UCEC WXS tumor CPT0117300006 f7d28c63-6c3f-4eb3-80f7-af6930366f7f_wxs_gdc_realn.bam 34740686940 BAM harmonized CPTAC3 c8abad79-573c-4599-b651-98e9b0161f79 32bcff301940194bfa7abe0b693b77a3 {"aliquot_tag": "ALQ_6946a205", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.MethArray.Green.T C3N-01875 UCEC Methylation_Array tumor CPT0117370007 203219670217_R03C01_Grn.idat 13676220 IDAT Green NA CPTAC3 52ac0970-293a-4161-8261-a6ba497d1724 58fb6fe98b2c6100277677f0ee2af3c7 {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.MethArray.Red.T C3N-01875 UCEC Methylation_Array tumor CPT0117370007 203219670217_R03C01_Red.idat 13676220 IDAT Red NA CPTAC3 116c84c0-2f14-4c46-aa72-bf1126d022c5 0bc17fa47e9d9b91b4289f6afafc003a {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.miRNA-Seq.A.hg38 C3N-01875 UCEC miRNA-Seq tissue_normal CPT0117390006 09991dad-569c-4519-a6a1-505aa2d6134e_mirnaseq_gdc_realn.bam 254189884 BAM harmonized CPTAC3 fec05ddf-ce00-4467-b37b-78fe08c92dfb b1a6e370245e9c27c56457943ca7ed34 {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01875.miRNA-Seq.S28_L005_R1.T C3N-01875 UCEC miRNA-Seq tumor CPT0117370010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L005_R1_001.unaln.bam 213047372 BAM S28_L005_R1 submitted_unaligned CPTAC3 5294be67-eac0-4654-9014-8c4ca569f04b 939432a2557e4afef9c7a8f51d9b5248 {"aliquot_tag": "ALQ_2b1eea61", "sample": "S28", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.miRNA-Seq.S47_L003_R1.A C3N-01875 UCEC miRNA-Seq tissue_normal CPT0117390006 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGAAG_S47_L003_R1_001.unaln.bam 218853311 BAM S47_L003_R1 submitted_unaligned CPTAC3 cbf5e88a-114f-4b21-ad5a-0202c2f7751d f9714ca5e7888dd2cb3814afbadd9ca1 {"aliquot_tag": "ALQ_6456c074", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01875.miRNA-Seq.T.hg38 C3N-01875 UCEC miRNA-Seq tumor CPT0117370010 524b08b0-dc8f-4361-a7ef-841a8806ea34_mirnaseq_gdc_realn.bam 237774592 BAM harmonized CPTAC3 aa403b46-5225-4821-a913-44cd6cd48dd9 09fc9cf5445ea838a60136a7ae32e842 {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.chimeric.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.chimeric.gdc_realn.bam 46969022 BAM chimeric harmonized CPTAC3 f256ea4e-9b21-4ea1-b752-2a2bb63e3b66 521e7adcbd53e23c1e37f46f2d9337a6 {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01875.RNA-Seq.chimeric.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.chimeric.gdc_realn.bam 61424775 BAM chimeric harmonized CPTAC3 68b789ae-2207-45ba-9fb4-d017425acafa 5c43e906420e3f128ae429868422e72a {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.chimeric.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.chimeric.gdc_realn.bam 300173612 BAM chimeric harmonized CPTAC3 4a2a0075-7d9a-41f8-b53f-094e3018399c f5858d28637ad5f044b90b26c395890e {"aliquot_tag": "ALQ_672b973", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.genomic.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.genomic.gdc_realn.bam 9108565109 BAM genomic harmonized CPTAC3 1bcc8bfd-5841-48cf-8cc7-7f3c4e9161bd 87af12801334a5c45d728441348f8f3a {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01875.RNA-Seq.genomic.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.genomic.gdc_realn.bam 8184371762 BAM genomic harmonized CPTAC3 bcf6f2a4-0e6d-4730-a086-abae68de3035 f5c50debcfb67df7a19392ce06394a98 {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.genomic.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.genomic.gdc_realn.bam 12155013221 BAM genomic harmonized CPTAC3 90ea6ff9-ac98-4508-8fe2-67729ea87d93 ef3147dc0343d4e18f58bba68ca2fe52 {"aliquot_tag": "ALQ_672b973", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.S1_L001_R1.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3932753521 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 2d4e5d3b-3348-4e13-bf3c-8c724df75ee4 54812e848805ee020eb19439d046d48a {"aliquot_tag": "ALQ_6456c074", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01875.RNA-Seq.S1_L001_R2.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 4328448634 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 dbdf9de9-3c31-47a1-bfc9-3cf812b0d767 f11a931636f2b2d83bab90e1f78c84b6 {"aliquot_tag": "ALQ_6456c074", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01875.RNA-Seq.S57_R1.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R1_001.fastq.gz 8276135256 FASTQ S57_R1 submitted_unaligned CPTAC3 9efa5228-7f68-4e0a-8dea-08f05ff3b94c 69f5a530c46418d63c6e8198af532e9c {"aliquot_tag": "ALQ_672b973", "sample": "S57", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.S57_R2.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R2_001.fastq.gz 8592493759 FASTQ S57_R2 submitted_unaligned CPTAC3 b3bec528-e765-4e31-8e59-72243be01608 2eda9d94fd3f039a9595e778f1c4d131 {"aliquot_tag": "ALQ_672b973", "sample": "S57", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.S7_L002_R1.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R1_001.fastq.gz 3948746418 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 572fe453-742d-4535-8b2c-2f320cf01853 e7df1ef76ff54d0bef3ceee19ec70c45 {"aliquot_tag": "ALQ_2b1eea61", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.S7_L002_R2.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R2_001.fastq.gz 4029884985 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 199d1d37-fa4e-4a5b-8cde-332a5846109a dded4c9b5ccb39d71083990455612cd5 {"aliquot_tag": "ALQ_2b1eea61", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.transcriptome.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.transcriptome.gdc_realn.bam 10975510004 BAM transcriptome harmonized CPTAC3 03d58888-13d7-4b30-aeaa-b986030f238d c15c853a756f1f4258e78dc5a33e56f7 {"aliquot_tag": "ALQ_6456c074", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01875.RNA-Seq.transcriptome.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.transcriptome.gdc_realn.bam 9987917604 BAM transcriptome harmonized CPTAC3 7c6da2ed-e9a4-4f3e-a909-d971090f89ae aa678ff8463baeec1097a2a9916d1b3e {"aliquot_tag": "ALQ_2b1eea61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.RNA-Seq.transcriptome.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.transcriptome.gdc_realn.bam 7731666744 BAM transcriptome harmonized CPTAC3 3a05c6bb-b3a5-4d9f-89a2-dd3f73a2f146 911fc6f2e0c86f3dce1dc1fed1e8cb31 {"aliquot_tag": "ALQ_672b973", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.WGS.N C3N-01875 UCEC WGS blood_normal CPT0117430002 CPT0117430002.WholeGenome.RP-1303.bam 60481735695 BAM submitted_aligned CPTAC3 4e3ff215-4b85-4d4e-a78c-b79024191c94 4710288a4685eab36c9916af884a6f38 {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01875.WGS.N.hg38 C3N-01875 UCEC WGS blood_normal CPT0117430002 888e64a7-b440-45a5-8e81-1587f98e4053_wgs_gdc_realn.bam 87491529073 BAM harmonized CPTAC3 b96f7166-53a7-4c72-8be9-309fbbeaadf9 f4d4e41a30af033f1ddd74f884cb65ba {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01875.WGS.T C3N-01875 UCEC WGS tumor CPT0117370007 CPT0117370007.WholeGenome.RP-1303.bam 62104710329 BAM submitted_aligned CPTAC3 cab1ac54-aafd-4098-94fc-fbc2ae3a9757 a401a6078be2f81574ecafbfd8a77bae {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.WGS.T.hg38 C3N-01875 UCEC WGS tumor CPT0117370007 2cfe5b01-0998-4ee6-8544-7d88738aa6ae_wgs_gdc_realn.bam 92817498332 BAM harmonized CPTAC3 ae7e42fa-bf11-4b59-b8e4-5dad520a5362 ea0bb58c3deeb65eadc9ed88e7c64fac {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.WXS.N C3N-01875 UCEC WXS blood_normal CPT0117430002 CPT0117430002.WholeExome.RP-1303.bam 20149424604 BAM submitted_aligned CPTAC3 36390558-6f65-4195-beca-c3822e4487f9 380a2833aa49ae5d7f273cc846f41a60 {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01875.WXS.N.hg38 C3N-01875 UCEC WXS blood_normal CPT0117430002 888e64a7-b440-45a5-8e81-1587f98e4053_wxs_gdc_realn.bam 28077329226 BAM harmonized CPTAC3 eb562d60-7abb-4582-a3f0-d740b6c57876 9bed6969198d91686589c76f1b67b034 {"aliquot_tag": "ALQ_348e2c74", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01875.WXS.T C3N-01875 UCEC WXS tumor CPT0117370007 CPT0117370007.WholeExome.RP-1303.bam 29491418766 BAM submitted_aligned CPTAC3 6968a110-9308-4906-b277-9abe881f739b 9fb6299c3768a82a349d28f96f4384d8 {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01875.WXS.T.hg38 C3N-01875 UCEC WXS tumor CPT0117370007 2cfe5b01-0998-4ee6-8544-7d88738aa6ae_wxs_gdc_realn.bam 40676633165 BAM harmonized CPTAC3 6f9ff065-a1d9-485e-b9d2-2169684c427c 81d28c7d34c915a45e5693ce3be2e7de {"aliquot_tag": "ALQ_ac614e83", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.MethArray.Green.T C3N-01876 UCEC Methylation_Array tumor CPT0117440006 203220070082_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bf5be4e1-5cd3-4ab7-a7c9-392393986b00 1415db62843983eab7e86ad19f541900 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.MethArray.Red.T C3N-01876 UCEC Methylation_Array tumor CPT0117440006 203220070082_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 7dc2222a-722c-4ce1-8072-26c1bc9943f9 7769ea9bea91a896b19c6fff45ae1091 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.miRNA-Seq.A.hg38 C3N-01876 UCEC miRNA-Seq tissue_normal CPT0117460009 f58ecc0b-6321-41e1-ad1b-2cae4a16e5e9_mirnaseq_gdc_realn.bam 273521118 BAM harmonized CPTAC3 f96536fd-40de-43b2-b170-7e4e71bc3c12 f3e55749c67bfb3fd68114e118674fad {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.miRNA-Seq.S29_L005_R1.T C3N-01876 UCEC miRNA-Seq tumor CPT0117440009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L005_R1_001.unaln.bam 227248056 BAM S29_L005_R1 submitted_unaligned CPTAC3 27b2cae5-ee05-498b-a4f9-0d934433244b 900eb20519808e2e778afcbe8b0f0330 {"aliquot_tag": "ALQ_117c29ec", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.miRNA-Seq.S48_L003_R1.A C3N-01876 UCEC miRNA-Seq tissue_normal CPT0117460009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGGCA_S48_L003_R1_001.unaln.bam 236658792 BAM S48_L003_R1 submitted_unaligned CPTAC3 42cb7297-84e3-4124-b18c-4e5d98ec1d9b 16dd8f27939212845a652d2aaf10f982 {"aliquot_tag": "ALQ_6bbc7a8c", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.miRNA-Seq.T.hg38 C3N-01876 UCEC miRNA-Seq tumor CPT0117440009 9587e91c-fe4b-4b5f-88fe-0f1af6a44bbd_mirnaseq_gdc_realn.bam 259053010 BAM harmonized CPTAC3 64ac8905-f9cd-4cc4-ad3b-d9ae4312c593 5ca72f51998f0a74804894077bb2e175 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.chimeric.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.chimeric.gdc_realn.bam 54328805 BAM chimeric harmonized CPTAC3 edccdade-c525-4783-9b2d-bbece71ad7e0 360ee4fac35298973db47865d0ec6a9f {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.RNA-Seq.chimeric.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.chimeric.gdc_realn.bam 38211556 BAM chimeric harmonized CPTAC3 e49a721f-c601-4e86-bb57-3f3adba596c1 18309bba3bce3fa89879ac17037f0614 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.chimeric.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.chimeric.gdc_realn.bam 256223473 BAM chimeric harmonized CPTAC3 364d03dc-de1c-482b-97a7-573177866538 f9df5a199ab225ac30ff602664b414ac {"aliquot_tag": "ALQ_b9420712", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.genomic.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.genomic.gdc_realn.bam 9941484364 BAM genomic harmonized CPTAC3 9040f36b-2352-43ec-b8f6-22f34bbde5d5 1a30b4aa06978e9a2664abe5660225df {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.RNA-Seq.genomic.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.genomic.gdc_realn.bam 8220673375 BAM genomic harmonized CPTAC3 5234a6ae-cdfb-43a9-a512-ac6ea6083784 eb9cf0bf2470040e43227a0dcc5f5836 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.genomic.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.genomic.gdc_realn.bam 10650743750 BAM genomic harmonized CPTAC3 0a888fb1-3d13-4286-aea7-a34077785623 b2da410456797f6f1bf5ec3f05a2960c {"aliquot_tag": "ALQ_b9420712", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.S2_R1.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R1_001.fastq.gz 6637923585 FASTQ S2_R1 submitted_unaligned CPTAC3 1ce66ac7-2cdd-4aee-befe-e262128803b1 4b36c54f220fe1876db92c9b61fe1197 {"aliquot_tag": "ALQ_b9420712", "sample": "S2", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.S2_R2.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R2_001.fastq.gz 6846423470 FASTQ S2_R2 submitted_unaligned CPTAC3 716fd6c8-9549-4f0d-a110-414d775cfe3d f0e4845fa7021d1f3d57e0be06f1fa8a {"aliquot_tag": "ALQ_b9420712", "sample": "S2", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.S4_L001_R1.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4277362519 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 e56a086a-9189-4798-9d29-b3972cb193f9 3e4dfb78ec6b64723c57916a73aa5a1c {"aliquot_tag": "ALQ_6bbc7a8c", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.RNA-Seq.S4_L001_R2.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4757675547 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 725a91e3-b8fd-4b89-b7b8-15091323cc5e 4ddaf4ebf9da700863c4daf816607419 {"aliquot_tag": "ALQ_6bbc7a8c", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.RNA-Seq.S9_L003_R1.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3939341820 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 7b9c1e27-ab2d-4916-b7cd-e65bf866383e db3f70f1ef648f4a7c523ddc55dcd62a {"aliquot_tag": "ALQ_117c29ec", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.S9_L003_R2.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4122695682 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 9da87d3c-7add-44bd-a77d-73bffab555b0 f111a49a153d51ea2d0a65c0f2d3ddf2 {"aliquot_tag": "ALQ_117c29ec", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.transcriptome.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.transcriptome.gdc_realn.bam 11837074536 BAM transcriptome harmonized CPTAC3 93d32fc5-a06f-43f5-a673-3601dbe52213 bbd577eac06c74bc2bae1c777e199703 {"aliquot_tag": "ALQ_6bbc7a8c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.RNA-Seq.transcriptome.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.transcriptome.gdc_realn.bam 11287050450 BAM transcriptome harmonized CPTAC3 f392a4ce-c23b-44bf-9bf1-ca7d56df6202 e4720259110cca9099c6c182014ce985 {"aliquot_tag": "ALQ_117c29ec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.RNA-Seq.transcriptome.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.transcriptome.gdc_realn.bam 5165281066 BAM transcriptome harmonized CPTAC3 f6ff6f6f-45db-43fe-814c-5d1a643d522a c1b0ba50134bf87f551f048b0d16597c {"aliquot_tag": "ALQ_b9420712", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.WGS.A C3N-01876 UCEC WGS tissue_normal CPT0117460006 CPT0117460006.WholeGenome.RP-1303.bam 62897242073 BAM submitted_aligned CPTAC3 3f605f64-302a-40ad-a336-498e82501ca6 1457f978a63e8e6d815a5f9932ae23ff {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.WGS.A.hg38 C3N-01876 UCEC WGS tissue_normal CPT0117460006 436d887f-93f8-48b7-9076-4575d4400f78_wgs_gdc_realn.bam 92915318396 BAM harmonized CPTAC3 50f6619f-28af-4469-90a7-b955893ee01e 4838111137b751d23015103cdd48e753 {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.WGS.N C3N-01876 UCEC WGS blood_normal CPT0117500002 CPT0117500002.WholeGenome.RP-1303.bam 63181255926 BAM submitted_aligned CPTAC3 b066ca2f-eb5e-4aa8-a4f1-70c94e100c06 74db40e5d4f63fe6d8001769bf9fdc81 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01876.WGS.N.hg38 C3N-01876 UCEC WGS blood_normal CPT0117500002 8e488837-ed32-480e-ad60-a30ffd48551f_wgs_gdc_realn.bam 92930198563 BAM harmonized CPTAC3 cbcce567-27d9-4867-8520-647199386a37 700cea6f4ca1f7abf41a113feee64437 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01876.WGS.T C3N-01876 UCEC WGS tumor CPT0117440006 CPT0117440006.WholeGenome.RP-1303.bam 72187193873 BAM submitted_aligned CPTAC3 c0c47210-12ac-424d-8af3-d819a809f369 b8661733dc34925f4ad418ff29c7f7f2 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.WGS.T.hg38 C3N-01876 UCEC WGS tumor CPT0117440006 1bfc6f87-acc0-45ab-b3b2-3228ead244d3_wgs_gdc_realn.bam 107473105748 BAM harmonized CPTAC3 0b8acafd-19fb-469d-8fd8-3e48efe05453 b023414a6cb4d6e1921cb4f99cef37a7 {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.WXS.A C3N-01876 UCEC WXS tissue_normal CPT0117460006 CPT0117460006.WholeExome.RP-1303.bam 23978136372 BAM submitted_aligned CPTAC3 21b1525e-18ba-4bed-9995-4280944cd6af c6e2d9030c45a6381256e0092a6cc887 {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.WXS.A.hg38 C3N-01876 UCEC WXS tissue_normal CPT0117460006 436d887f-93f8-48b7-9076-4575d4400f78_wxs_gdc_realn.bam 33417715513 BAM harmonized CPTAC3 20a267a8-c3a8-4c49-bf0d-647da85f7755 e8438b2ad1ffd152b549e1f2642ab9ac {"aliquot_tag": "ALQ_fb03671d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01876.WXS.N C3N-01876 UCEC WXS blood_normal CPT0117500002 CPT0117500002.WholeExome.RP-1303.bam 31164004720 BAM submitted_aligned CPTAC3 199cbc6c-6acc-4e45-a5f7-96abaa94d4b9 9f777a730daed5335b336d83353ce1b9 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01876.WXS.N.hg38 C3N-01876 UCEC WXS blood_normal CPT0117500002 8e488837-ed32-480e-ad60-a30ffd48551f_wxs_gdc_realn.bam 42537400811 BAM harmonized CPTAC3 4f647e68-2385-48a1-a5d8-1b1c252aac61 644dac4f11361b131e1321482b5b1f85 {"aliquot_tag": "ALQ_b8728501", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01876.WXS.T C3N-01876 UCEC WXS tumor CPT0117440006 CPT0117440006.WholeExome.RP-1303.bam 23612896426 BAM submitted_aligned CPTAC3 b055abad-ca6f-4fcf-a9eb-4c6bab439721 aaea4f6cf92567622a9c729fa17937ba {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01876.WXS.T.hg38 C3N-01876 UCEC WXS tumor CPT0117440006 1bfc6f87-acc0-45ab-b3b2-3228ead244d3_wxs_gdc_realn.bam 32778544828 BAM harmonized CPTAC3 31392433-4aab-44a6-8da6-02dde2054bf5 84d8f4a8ce17fdde815616e62369c0db {"aliquot_tag": "ALQ_81c3347d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.MethArray.Green.T C3N-01877 UCEC Methylation_Array tumor CPT0117510006 203219720203_R02C01_Grn.idat 13676219 IDAT Green NA CPTAC3 6f8d9669-e5ff-4fec-aff6-7360b94df87c c4726e6da28c41cf4678faa47f4c3e78 {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.MethArray.Red.T C3N-01877 UCEC Methylation_Array tumor CPT0117510006 203219720203_R02C01_Red.idat 13676219 IDAT Red NA CPTAC3 313b17eb-1ab2-40e1-8d19-fbf2111ed360 ec4e4c7a3256ae932bcf809f43b0f92d {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.miRNA-Seq.S30_L005_R1.T C3N-01877 UCEC miRNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACCGG_S30_L005_R1_001.unaln.bam 215872030 BAM S30_L005_R1 submitted_unaligned CPTAC3 935ffb3d-90af-4224-b02a-c4faddb9e6ce a44ac35c22077e3c272f05df4bb9d0e7 {"aliquot_tag": "ALQ_12c07539", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.miRNA-Seq.T.hg38 C3N-01877 UCEC miRNA-Seq tumor CPT0117510009 74b3f75b-f213-43af-aed8-5879e75f97d7_mirnaseq_gdc_realn.bam 236898211 BAM harmonized CPTAC3 ec185926-9180-4a04-ae30-35606b06fb8e 2127316882ca3fd0bcd0bc1d1700b337 {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.chimeric.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.chimeric.gdc_realn.bam 39346966 BAM chimeric harmonized CPTAC3 f7a7cc84-ea1a-4a18-bbe9-7a8751a0ee63 7e7efb733d7e4108f52c3729b070117a {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.chimeric.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.chimeric.gdc_realn.bam 407652741 BAM chimeric harmonized CPTAC3 c72b1118-ba29-4e07-9a1b-17c008e5f508 0c048db5531ca2dc1e232b8453ce4074 {"aliquot_tag": "ALQ_7f0eb6c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.genomic.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.genomic.gdc_realn.bam 9060736368 BAM genomic harmonized CPTAC3 be67cf7b-f9a8-4069-999e-ae1feb361d22 bd62c671e65b41a766adcb177dc8d7e6 {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.genomic.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.genomic.gdc_realn.bam 18881674449 BAM genomic harmonized CPTAC3 d0f622a6-1d04-4bd5-8664-17cb9559cacf ec20d4d097b26ab8fdcf644a0b4b761a {"aliquot_tag": "ALQ_7f0eb6c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.S11_L003_R1.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4141895071 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 a6a46db0-9e5e-4ad3-beaa-84d438688671 03007bc049981b494da964c1511ab6ee {"aliquot_tag": "ALQ_12c07539", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.S11_L003_R2.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4392376489 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 a6e9b1bc-3a45-4ca0-a3f2-c88d78fd2561 1db6ef42873bedbc417b05ff2c772559 {"aliquot_tag": "ALQ_12c07539", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.S66_R1.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R1_001.fastq.gz 13729024495 FASTQ S66_R1 submitted_unaligned CPTAC3 de1fe3bb-8cec-4d24-a7f2-691958e09c1c 45e283144440bcbb1231de6c5d36c561 {"aliquot_tag": "ALQ_7f0eb6c6", "sample": "S66", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.S66_R2.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R2_001.fastq.gz 14278651526 FASTQ S66_R2 submitted_unaligned CPTAC3 e1ba06b4-42e6-4a08-a0d3-007e9613ffe5 8ea5c229a9cb1633c8ec02c9194d73ff {"aliquot_tag": "ALQ_7f0eb6c6", "sample": "S66", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.transcriptome.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.transcriptome.gdc_realn.bam 10117235419 BAM transcriptome harmonized CPTAC3 d8f1d527-8c10-46e2-9cf5-8c19dbe4b7c0 eccd9f596e3a9e57ace5b422f302eeae {"aliquot_tag": "ALQ_12c07539", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.RNA-Seq.transcriptome.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.transcriptome.gdc_realn.bam 11438376822 BAM transcriptome harmonized CPTAC3 b761bef1-1fa9-4e3b-8d29-646debe77423 c7b7adb01f88968f680366eeedcdf176 {"aliquot_tag": "ALQ_7f0eb6c6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.WGS.N C3N-01877 UCEC WGS blood_normal CPT0117550002 CPT0117550002.WholeGenome.RP-1303.bam 51574593696 BAM submitted_aligned CPTAC3 f8134fb4-b004-4fc6-a48c-5e9431bb419b d6643cb6db1197f785abb13d047be58b {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01877.WGS.N.hg38 C3N-01877 UCEC WGS blood_normal CPT0117550002 f7c5ef71-dce5-4eb0-867d-19bafd6e518b_wgs_gdc_realn.bam 77237598235 BAM harmonized CPTAC3 30b48662-8f18-4da3-832c-559fb6f6766e 0776c060ba1fdb35c5cdb3666b60b920 {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01877.WGS.T C3N-01877 UCEC WGS tumor CPT0117510006 CPT0117510006.WholeGenome.RP-1303.bam 59748819595 BAM submitted_aligned CPTAC3 a9b42c8d-49a0-4ea0-948b-758c66d3db5a e49b4aad2f88137a1ca74c59029f2c1d {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.WGS.T.hg38 C3N-01877 UCEC WGS tumor CPT0117510006 0f99325d-7914-4ea6-9f57-a7b420a03487_wgs_gdc_realn.bam 88882038796 BAM harmonized CPTAC3 0043b2ca-5257-431e-b4c3-f3598a48f2ba 7b6b0780c9e1f2f91d94b2fdae49c06d {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.WXS.N C3N-01877 UCEC WXS blood_normal CPT0117550002 CPT0117550002.WholeExome.RP-1303.bam 27666627418 BAM submitted_aligned CPTAC3 275d3c26-67ee-4f60-baf5-8f705d52666c 05a78976ffb988b04d0a59f9ea21e152 {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01877.WXS.N.hg38 C3N-01877 UCEC WXS blood_normal CPT0117550002 f7c5ef71-dce5-4eb0-867d-19bafd6e518b_wxs_gdc_realn.bam 37988678213 BAM harmonized CPTAC3 56d93bac-c390-438b-9b5e-ce6434e04cc7 7a23265c0dd0a4d993424fdad34d63e4 {"aliquot_tag": "ALQ_70920a71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01877.WXS.T C3N-01877 UCEC WXS tumor CPT0117510006 CPT0117510006.WholeExome.RP-1303.bam 19218466898 BAM submitted_aligned CPTAC3 bf242392-4d9c-43f6-ab6d-20b7010196ea 85295f08288eecb0af7f27bae1ce8d8c {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01877.WXS.T.hg38 C3N-01877 UCEC WXS tumor CPT0117510006 0f99325d-7914-4ea6-9f57-a7b420a03487_wxs_gdc_realn.bam 26938454301 BAM harmonized CPTAC3 9fcc573d-6f53-468a-a0f0-d9f14d29b3d6 4d3121a40f4c397244e6e20cdd518e85 {"aliquot_tag": "ALQ_827f68a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.MethArray.Green.T C3N-01878 UCEC Methylation_Array tumor CPT0117560006 203219750071_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ecb986f0-2fe4-4165-b643-f5c58a7b78d0 6025869bea325a49b5c9e39a401b1f22 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.MethArray.Red.T C3N-01878 UCEC Methylation_Array tumor CPT0117560006 203219750071_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ea7c085-245f-49c0-9a4c-ab94fc44c9af 93fd9ad2f0cf7077411c1c640fff4fd9 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.miRNA-Seq.S31_L005_R1.T C3N-01878 UCEC miRNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACGAT_S31_L005_R1_001.unaln.bam 192812882 BAM S31_L005_R1 submitted_unaligned CPTAC3 1fbc2137-2b26-43c2-9b92-0652df74bee3 a66a171f2242380cbaaa119c8c644104 {"aliquot_tag": "ALQ_a0e0a929", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.miRNA-Seq.T.hg38 C3N-01878 UCEC miRNA-Seq tumor CPT0117560009 487e2f7b-ea40-40af-bb33-a4a1dc227321_mirnaseq_gdc_realn.bam 212567175 BAM harmonized CPTAC3 0c55cf48-eab1-4fb2-bb78-aa90a9446ff4 952989cf258fd329096e6f94a77b8c60 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.chimeric.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.chimeric.gdc_realn.bam 44772920 BAM chimeric harmonized CPTAC3 a47ceadb-fe73-4c36-90bf-b97770147c8e eb97d972f09a2778adffd94b48d783c1 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.chimeric.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.chimeric.gdc_realn.bam 72529338 BAM chimeric harmonized CPTAC3 0f447363-8f14-45a7-b10b-2bb49f26c6b7 57bf2b766309e697ff13d4355836c535 {"aliquot_tag": "ALQ_5cee5a6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.genomic.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.genomic.gdc_realn.bam 8418554102 BAM genomic harmonized CPTAC3 a9424516-faf2-4883-b093-88a9205f4ad6 b7ffb4df9d428d8b418e11759a07a420 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.genomic.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.genomic.gdc_realn.bam 4670799164 BAM genomic harmonized CPTAC3 adf973e4-c075-4265-b8ff-1b7641c3c4b1 7dd0b5a470e04403dc0da6c1f02cbe6d {"aliquot_tag": "ALQ_5cee5a6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.S10_L003_R1.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3839235837 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 970fa09c-f2f0-4c05-b6b4-024d45e36fd0 18e058a95bb0e964ac739c71787a711c {"aliquot_tag": "ALQ_a0e0a929", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.S10_L003_R2.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R2_001.fastq.gz 4054585876 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 e3140a45-e48e-4db5-b8b7-efc0a547188b 2ee32ef39ff47d815e77b39d601e2432 {"aliquot_tag": "ALQ_a0e0a929", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.S9_R1.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R1_001.fastq.gz 3153382014 FASTQ S9_R1 submitted_unaligned CPTAC3 84fbf577-cacd-4a26-84aa-6c34c82ef7ae 665748ae98bd5c2a8246dc1f7446e036 {"aliquot_tag": "ALQ_5cee5a6", "sample": "S9", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.S9_R2.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R2_001.fastq.gz 3277664387 FASTQ S9_R2 submitted_unaligned CPTAC3 1727792c-e532-47f1-8cab-b79e64ef6016 987f230c786c696c4a6a44167184dc35 {"aliquot_tag": "ALQ_5cee5a6", "sample": "S9", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.transcriptome.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.transcriptome.gdc_realn.bam 11313160249 BAM transcriptome harmonized CPTAC3 5472ed40-17f2-489c-9383-d96b91ea3ab8 7814273a94af9487b8268deaa958de35 {"aliquot_tag": "ALQ_a0e0a929", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.RNA-Seq.transcriptome.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.transcriptome.gdc_realn.bam 2616273426 BAM transcriptome harmonized CPTAC3 5780a347-6932-45f9-931e-a0853ec933b8 e0152b67668254d1299c6287bd4ddadd {"aliquot_tag": "ALQ_5cee5a6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.WGS.N C3N-01878 UCEC WGS blood_normal CPT0117620002 CPT0117620002.WholeGenome.RP-1303.bam 56075030402 BAM submitted_aligned CPTAC3 cccd727e-a88a-4745-8206-49c022817f18 e77a9a7d750a4c51d0b2adccf018be1d {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01878.WGS.N.hg38 C3N-01878 UCEC WGS blood_normal CPT0117620002 889965f5-7383-44fa-b367-ab31381e72c0_wgs_gdc_realn.bam 80502872579 BAM harmonized CPTAC3 0963c3a8-985f-4f98-bafd-271cac96c249 5775f129a2a14bd9a013ba732346a46c {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01878.WGS.T C3N-01878 UCEC WGS tumor CPT0117560006 CPT0117560006.WholeGenome.RP-1303.bam 60629448902 BAM submitted_aligned CPTAC3 cbaba078-f10d-4804-9e59-1a79711c55ab 9e728b66a2eda6677400684b2ef28a4d {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.WGS.T.hg38 C3N-01878 UCEC WGS tumor CPT0117560006 5cf2f8af-40e6-4465-9b58-b6921ff700af_wgs_gdc_realn.bam 89356823319 BAM harmonized CPTAC3 7e9370b1-5f4f-411f-82d4-595e0b53a08b 0a6e44df4bab983f5ae887fcc4f19858 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.WXS.N C3N-01878 UCEC WXS blood_normal CPT0117620002 CPT0117620002.WholeExome.RP-1303.bam 18946741369 BAM submitted_aligned CPTAC3 9588353e-537b-4b23-a6a8-bb5f4ad918e6 610ed8b01395ac93b068b3296d42a814 {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01878.WXS.N.hg38 C3N-01878 UCEC WXS blood_normal CPT0117620002 889965f5-7383-44fa-b367-ab31381e72c0_wxs_gdc_realn.bam 26737564390 BAM harmonized CPTAC3 fad3393e-1c86-4f28-88a3-8e63df0050c4 f78081aae9bca0895c3bbb3b44b60277 {"aliquot_tag": "ALQ_4426a4cf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01878.WXS.T C3N-01878 UCEC WXS tumor CPT0117560006 CPT0117560006.WholeExome.RP-1303.bam 19668274680 BAM submitted_aligned CPTAC3 1aef99a2-8452-4650-b52a-899c07a5000f 865d715c899a7ac84ab0ff2c71a0788e {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01878.WXS.T.hg38 C3N-01878 UCEC WXS tumor CPT0117560006 5cf2f8af-40e6-4465-9b58-b6921ff700af_wxs_gdc_realn.bam 26716326912 BAM harmonized CPTAC3 36863ffa-3f7f-42c7-9585-680485ab97f8 19ea9a83753c201142a0d0e67dce29a0 {"aliquot_tag": "ALQ_305fb4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.MethArray.Green.T C3N-01879 UCEC Methylation_Array tumor CPT0226860006 203561620052_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0283d9ff-61a8-4a12-9c32-bab9fb0b59cc 77bfb68551021165386eeee24a093848 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.MethArray.Red.T C3N-01879 UCEC Methylation_Array tumor CPT0226860006 203561620052_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 92da5234-bed5-4771-8006-6b86a22d6c5d 9f16be437408e335db0c62cbe6c807d1 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.miRNA-Seq.S34_L004_R1.T C3N-01879 UCEC miRNA-Seq tumor CPT0226860009 190508_UNC31-K00269_0215_BH7FYKBBXY_CATGGC_S34_L004_R1_001.unaln.bam 259536011 BAM S34_L004_R1 submitted_unaligned CPTAC3 3050e2bb-8216-4e5e-a485-2c0647173119 3d648932d81122e70744ab65596b71aa {"aliquot_tag": "ALQ_d0b8a65", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.miRNA-Seq.T.hg38 C3N-01879 UCEC miRNA-Seq tumor CPT0226860009 b01e86d3-3ce3-4622-be24-ba65064c21c6_mirnaseq_gdc_realn.bam 304432949 BAM harmonized CPTAC3 cd1c5194-07e2-47c5-8f4f-ad56671e5cd1 fda5b314e613996bd70350952fce67cd {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.RNA-Seq.chimeric.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.chimeric.gdc_realn.bam 35738926 BAM chimeric harmonized CPTAC3 0fed57a0-908a-42b9-bc76-3e4c9a4a6214 7318883fc36c03cf82bd46b7835c113c {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.RNA-Seq.genomic.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.genomic.gdc_realn.bam 8687876639 BAM genomic harmonized CPTAC3 2a4212d0-90d4-472a-a548-ed28ff46f11c 36e34768494dd98e01494553605f3b30 {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.RNA-Seq.S6_L002_R1.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R1_001.fastq.gz 4038180157 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 2a468038-2b4b-4622-8cc8-e221b770a9b5 a7d12f29f42f0b275df94c3c255d3b7f {"aliquot_tag": "ALQ_d0b8a65", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.RNA-Seq.S6_L002_R2.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R2_001.fastq.gz 4662253514 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 aa538b39-8eb2-4c6f-8613-5adfbb0219a2 d31417e57007e5790d6e84103284097e {"aliquot_tag": "ALQ_d0b8a65", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.RNA-Seq.transcriptome.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.transcriptome.gdc_realn.bam 13376673290 BAM transcriptome harmonized CPTAC3 70936f76-371d-4151-8ed0-a4e79ec7114b 216f978d83f27a3f921c3429017e392f {"aliquot_tag": "ALQ_d0b8a65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.WGS.N C3N-01879 UCEC WGS blood_normal CPT0226920002 CPT0226920002.WholeGenome.RP-1303.bam 60921275205 BAM submitted_aligned CPTAC3 45d8264c-8506-44c1-ad35-7e266defce5d 8b8027affc7e3e97121c87111c1b8ad1 {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01879.WGS.N.hg38 C3N-01879 UCEC WGS blood_normal CPT0226920002 848de4ff-8a75-413b-a0c2-da83827007cb_wgs_gdc_realn.bam 88924500106 BAM harmonized CPTAC3 390a1350-4bef-48d0-9078-9a1286b6e9c7 8cd70f6a0ae264cb93c07b0ddb42a3b1 {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01879.WGS.T C3N-01879 UCEC WGS tumor CPT0226860006 CPT0226860006.WholeGenome.RP-1303.bam 73422150794 BAM submitted_aligned CPTAC3 a8896b43-f07d-44c2-9121-14bd9f9220da 3fb9a01140f0afb685610def7d79178d {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.WGS.T.hg38 C3N-01879 UCEC WGS tumor CPT0226860006 17897397-8ef1-4b7e-a4be-62724d409003_wgs_gdc_realn.bam 107595501648 BAM harmonized CPTAC3 5fed5139-560c-4dbc-9672-979512d6139f 061a74b538aac7ce2d75e547256da9d4 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.WXS.N C3N-01879 UCEC WXS blood_normal CPT0226920002 CPT0226920002.WholeExome.RP-1303.bam 24823569143 BAM submitted_aligned CPTAC3 921f1e4e-afd2-427e-a747-fcf2cbec9316 5f5e1815944a474f0aa9174f3fffceea {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01879.WXS.N.hg38 C3N-01879 UCEC WXS blood_normal CPT0226920002 848de4ff-8a75-413b-a0c2-da83827007cb_wxs_gdc_realn.bam 33616257498 BAM harmonized CPTAC3 a8ed9897-44f6-43b7-8b65-d2aa2479fe40 7199a209a002a16549cce1c7744516a9 {"aliquot_tag": "ALQ_a4052688", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01879.WXS.T C3N-01879 UCEC WXS tumor CPT0226860006 CPT0226860006.WholeExome.RP-1303.bam 29225394152 BAM submitted_aligned CPTAC3 6202220b-ed68-4ca2-b7d9-24d1addb53e0 ccb8df4e9a62c84faae0874cd00ed556 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01879.WXS.T.hg38 C3N-01879 UCEC WXS tumor CPT0226860006 17897397-8ef1-4b7e-a4be-62724d409003_wxs_gdc_realn.bam 42273615193 BAM harmonized CPTAC3 bcc27383-e684-4967-933c-995e65a2d538 a28f09ed907181ab8ec4fdefce1531c4 {"aliquot_tag": "ALQ_9db497f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.MethArray.Green.T C3N-01880 UCEC Methylation_Array tumor CPT0244510006 203561620085_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a90b8107-b528-49a2-9d7b-65359df56cc0 6f8d7ce377070463f86da656582495a4 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.MethArray.Red.T C3N-01880 UCEC Methylation_Array tumor CPT0244510006 203561620085_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 49ff4995-61e8-440a-87a6-415552babd23 6fa91e1b6fbc23c6e29402f9a1609f68 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.miRNA-Seq.S4_L001_R1.T C3N-01880 UCEC miRNA-Seq tumor CPT0244510009 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L001_R1_001.unaln.bam 259038020 BAM S4_L001_R1 submitted_unaligned CPTAC3 d75b26de-6199-4d0f-b906-c82d03b702ff aa449a01b93abdabc1b16a37bce96505 {"aliquot_tag": "ALQ_52455d05", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.miRNA-Seq.T.hg38 C3N-01880 UCEC miRNA-Seq tumor CPT0244510009 e29c11af-cc00-49a4-8d62-f4921e79a64f_mirnaseq_gdc_realn.bam 295028008 BAM harmonized CPTAC3 cac99c4c-cb62-44db-8d2b-3004b7e88352 14574f5dda669b31c36b6441f278668d {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.chimeric.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.chimeric.gdc_realn.bam 34280970 BAM chimeric harmonized CPTAC3 0baca6a2-ac75-4c05-a874-15fc8cdf7702 d705a72fbe168f0e5f386085ec77660b {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.chimeric.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.chimeric.gdc_realn.bam 263293699 BAM chimeric harmonized CPTAC3 7098733c-8601-4e45-a8ce-f1e58f6558f9 b2087e837e982025e1c40eb24aacde4b {"aliquot_tag": "ALQ_c4faedd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.genomic.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.genomic.gdc_realn.bam 8697369420 BAM genomic harmonized CPTAC3 dee514f8-542a-42b0-941a-7edbba871fc1 cbe1965659111af8c5dacf9df77f7433 {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.genomic.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.genomic.gdc_realn.bam 10260283530 BAM genomic harmonized CPTAC3 a021196c-c20c-47df-85a8-c1bc05e98f91 91f04b41f04747f5c4aaaaa6f915d7ae {"aliquot_tag": "ALQ_c4faedd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.S14_L004_R1.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R1_001.fastq.gz 4203382401 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 d6857cce-e044-4fe0-b44a-82eba01251a8 7421c9d1da93eb256a1a02e00fc39dfc {"aliquot_tag": "ALQ_52455d05", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.S14_L004_R2.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R2_001.fastq.gz 4611168749 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 88c11e88-92c6-4c9f-9cbe-7e24d82c1278 2801ffc7b48bc7eda0c043b199dfa521 {"aliquot_tag": "ALQ_52455d05", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.S67_R1.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R1_001.fastq.gz 6201440903 FASTQ S67_R1 submitted_unaligned CPTAC3 2f306b3c-50a6-46b1-9425-7b9712cba72f 2ff3993448a4e4beee0da9c3c9f99995 {"aliquot_tag": "ALQ_c4faedd8", "sample": "S67", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.S67_R2.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R2_001.fastq.gz 6412025741 FASTQ S67_R2 submitted_unaligned CPTAC3 e316a345-3165-42fc-ace6-97793571cbb9 911a5cd180a992b52fbca139ae5e942f {"aliquot_tag": "ALQ_c4faedd8", "sample": "S67", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.transcriptome.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.transcriptome.gdc_realn.bam 11254460927 BAM transcriptome harmonized CPTAC3 1db7a820-a44a-4ea6-b5a3-55d69bbb96b4 dbe3446fb43c19748545487c6673ad67 {"aliquot_tag": "ALQ_52455d05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.RNA-Seq.transcriptome.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.transcriptome.gdc_realn.bam 4425805828 BAM transcriptome harmonized CPTAC3 6e8a6f85-a97d-4665-9571-8fca8d6fd9c7 e32883f9eab7a11eee0d66b27d4bc9bb {"aliquot_tag": "ALQ_c4faedd8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.WGS.N C3N-01880 UCEC WGS blood_normal CPT0244560002 CPT0244560002.WholeGenome.RP-1303.bam 80253521838 BAM submitted_aligned CPTAC3 cd597b48-4d5b-4915-88b4-73515b19849f 9cde4b79757cc15330dd8c4225339fe2 {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01880.WGS.N.hg38 C3N-01880 UCEC WGS blood_normal CPT0244560002 1f1edace-64cf-49f2-b523-58f4a1ff2a04_wgs_gdc_realn.bam 117146846013 BAM harmonized CPTAC3 96d2e55b-836f-4013-b867-4703e7a2030a f4ce680aa21ec9405283293bcb9d6811 {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01880.WGS.T C3N-01880 UCEC WGS tumor CPT0244510006 CPT0244510006.WholeGenome.RP-1303.bam 64775323574 BAM submitted_aligned CPTAC3 3d3e4424-a74c-45c6-adcb-3fb6506bbe08 dec1737320f2835eb004000e6b29543b {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.WGS.T.hg38 C3N-01880 UCEC WGS tumor CPT0244510006 e9c2219d-e9bc-4ccd-a5f1-34d361863681_wgs_gdc_realn.bam 94574287544 BAM harmonized CPTAC3 6cf4564e-807e-47ee-a688-23c337bde369 464d42a6464d4e32da1829a98869ec61 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.WXS.N C3N-01880 UCEC WXS blood_normal CPT0244560002 CPT0244560002.WholeExome.RP-1303.bam 24970242000 BAM submitted_aligned CPTAC3 03041c8f-94c6-4e18-8820-75b961158036 205320698416cafcc55c00de94c667fa {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01880.WXS.N.hg38 C3N-01880 UCEC WXS blood_normal CPT0244560002 1f1edace-64cf-49f2-b523-58f4a1ff2a04_wxs_gdc_realn.bam 33842256834 BAM harmonized CPTAC3 1a736b16-cc90-4dec-8910-d9f06356bd35 08aef304d3a63f1682f6603d2f446aad {"aliquot_tag": "ALQ_77b7589d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01880.WXS.T C3N-01880 UCEC WXS tumor CPT0244510006 CPT0244510006.WholeExome.RP-1303.bam 23210298839 BAM submitted_aligned CPTAC3 ecdc4f81-9508-4fe7-9c9d-9cb532a73b10 004e129bb22ecf21917884268aef1607 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01880.WXS.T.hg38 C3N-01880 UCEC WXS tumor CPT0244510006 e9c2219d-e9bc-4ccd-a5f1-34d361863681_wxs_gdc_realn.bam 32771880228 BAM harmonized CPTAC3 9577e58a-e24c-4b96-8965-868649eb595c 1bd76e783f1661ff1b1d8c91a0536ee2 {"aliquot_tag": "ALQ_c2fa4094", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01892.MethArray.Green.A C3N-01892 LSCC Methylation_Array tissue_normal CPT0126400006 203219670019_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 e82a30ee-de57-4226-b1f3-1ddfdc25bbcc cf5653875bbff3eaed5a5b23914f3ce9 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.MethArray.Green.T C3N-01892 LSCC Methylation_Array tumor CPT0126390006 203220070156_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 74627b90-08ef-43b4-8e11-3a5607b624cd 299a6b6e6a977bf06e834b1cf7b8d80e {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.MethArray.Red.A C3N-01892 LSCC Methylation_Array tissue_normal CPT0126400006 203219670019_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 8f3df4ed-63a4-480d-a2c4-a69bca98a7e5 f850892020a730c306d045052348ac3b {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.MethArray.Red.T C3N-01892 LSCC Methylation_Array tumor CPT0126390006 203220070156_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 e0cea229-868d-4101-92d1-0ddac5994622 952eadef25fc1f1434d5abe969202398 {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.miRNA-Seq.A.hg38 C3N-01892 LSCC miRNA-Seq tissue_normal CPT0126400009 2890ae73-1326-4bc0-9475-93a89d6da273_mirnaseq_gdc_realn.bam 265996832 BAM harmonized CPTAC3 14df333f-de64-42f8-afbc-81f6e5c40bdb 741ed769ff137cf9f5a846e3aea84093 {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.miRNA-Seq.S1_L003_R1.T C3N-01892 LSCC miRNA-Seq tumor CPT0126390009 181219_UNC31-K00269_0173_BHYGJJBBXX_ATCACG_S1_L003_R1_001.unaln.bam 196622786 BAM S1_L003_R1 submitted_unaligned CPTAC3 ffb578f3-5053-4ff9-9916-ccc80ff33f9f 37d34d407dd755eb4e57abd2567d8984 {"aliquot_tag": "ALQ_dc11d1b2", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.miRNA-Seq.S40_L002_R1.A C3N-01892 LSCC miRNA-Seq tissue_normal CPT0126400009 181219_UNC31-K00269_0173_BHYGJJBBXX_GACGAC_S40_L002_R1_001.unaln.bam 242957989 BAM S40_L002_R1 submitted_unaligned CPTAC3 2055770c-2922-4985-8ca4-4d7cadcbc0c9 47daf74f16ca4ce9650d2ee1aecc1f53 {"aliquot_tag": "ALQ_cc04837b", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.miRNA-Seq.T.hg38 C3N-01892 LSCC miRNA-Seq tumor CPT0126390009 4cd0a6f5-e248-4fe5-b25e-176afc6720f7_mirnaseq_gdc_realn.bam 217451505 BAM harmonized CPTAC3 5b2fb840-29db-4b49-b952-f978a98942a1 ab86400b61c11d5264c7bb1adeccfc5d {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.RNA-Seq.chimeric.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.chimeric.gdc_realn.bam 29377706 BAM chimeric harmonized CPTAC3 b3c20470-f3b6-4227-a2c8-a9c7e4854a90 a316e8eae8328fc32851d527ad1732ec {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.RNA-Seq.chimeric.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.chimeric.gdc_realn.bam 133399353 BAM chimeric harmonized CPTAC3 b1d908b8-b684-4e52-9f06-b27f409f932a 5a1de12a6f9f56377ee361e4a82f6302 {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.RNA-Seq.genomic.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.genomic.gdc_realn.bam 8753697480 BAM genomic harmonized CPTAC3 2effb7dc-686e-4fd2-93d2-9f61b4f865e2 d35c1bb7221d2f12a3cd2badc72d48a2 {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.RNA-Seq.genomic.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.genomic.gdc_realn.bam 9948339463 BAM genomic harmonized CPTAC3 ad18d199-64a6-40d9-ac24-ac43f902769b fc05f4bc556ef7c7a1f098a26fc902ad {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.RNA-Seq.S1_L001_R1.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R1_001.fastq.gz 4383784537 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 1c078fa3-dc53-4544-aee0-27967d868da1 ecbe35263025a218b7d67ee1189d341b {"aliquot_tag": "ALQ_dc11d1b2", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.RNA-Seq.S1_L001_R2.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R2_001.fastq.gz 4615445263 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 07c9c548-d6cb-4061-a8ae-e38fb4153d93 acfb591af56bd5f0d169f5dda79c2882 {"aliquot_tag": "ALQ_dc11d1b2", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.RNA-Seq.S3_L007_R1.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3975936000 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 85c2ee4c-aaad-4171-bfc7-92090c09a5e9 b91f3bfaa9c3b5c66dd243ac398863e9 {"aliquot_tag": "ALQ_cc04837b", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.RNA-Seq.S3_L007_R2.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4111613314 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 68ec7002-bf61-4f73-87be-d9ac22afc871 682cc9002f2312848f51a7704e09fdb9 {"aliquot_tag": "ALQ_cc04837b", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.RNA-Seq.transcriptome.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.transcriptome.gdc_realn.bam 11033042745 BAM transcriptome harmonized CPTAC3 0686eb2f-04c4-4f9c-9ced-96fd34ab6d60 bdb3161f38ea51be62739cc2a5c43018 {"aliquot_tag": "ALQ_cc04837b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.RNA-Seq.transcriptome.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.transcriptome.gdc_realn.bam 11767527283 BAM transcriptome harmonized CPTAC3 48d68d4e-5c9b-4f34-9ed6-1eedfb6e4b31 4f4f10bf48cde901062f823bcecdb639 {"aliquot_tag": "ALQ_dc11d1b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.WGS.A C3N-01892 LSCC WGS tissue_normal CPT0126400006 CPT0126400006.WholeGenome.RP-1303.bam 59921388930 BAM submitted_aligned CPTAC3 60c11bdf-7455-4f50-ad2b-d7a6d2aa4565 fe3a7ca527131b1ec258d04bb0514396 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.WGS.A.hg38 C3N-01892 LSCC WGS tissue_normal CPT0126400006 e9434614-c14c-49e8-9440-4ba994f842e7_wgs_gdc_realn.bam 87408260885 BAM harmonized CPTAC3 816d2725-b6e6-4a0a-8206-c6b07b77b0ac 87069921f19e9c3c1c1b592ea35a5c98 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.WGS.N C3N-01892 LSCC WGS blood_normal CPT0126440002 CPT0126440002.WholeGenome.RP-1303.bam 60278313066 BAM submitted_aligned CPTAC3 bc94eccc-44f4-47aa-940c-084ae6a0ac4d 3a1cd399cf0b15192989769958068aae {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01892.WGS.N.hg38 C3N-01892 LSCC WGS blood_normal CPT0126440002 9936e1e5-f01a-4b80-b2e9-13f1ce3a1bfe_wgs_gdc_realn.bam 88208725165 BAM harmonized CPTAC3 86222a6d-e2a9-4183-bb73-a518a823b924 b96fd3d17583a1cc533fa48c018fe409 {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01892.WGS.T C3N-01892 LSCC WGS tumor CPT0126390006 CPT0126390006.WholeGenome.RP-1303.bam 56917112585 BAM submitted_aligned CPTAC3 6947dadb-9caa-4407-9c57-e8003fc33ffd bdae572c18bcdebe7a24308de27128eb {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.WGS.T.hg38 C3N-01892 LSCC WGS tumor CPT0126390006 262aaf3d-8ee6-4cff-bce8-a0bbaf248d1e_wgs_gdc_realn.bam 83420440370 BAM harmonized CPTAC3 a2cacbac-133d-4806-8a11-27525bebee82 2ff54b1304eba227e9f383684027f791 {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.WXS.A C3N-01892 LSCC WXS tissue_normal CPT0126400006 CPT0126400006.WholeExome.RP-1303.bam 26657984926 BAM submitted_aligned CPTAC3 bf0b20e2-91d1-48a0-9f58-73465243c82f 7b4109d23b8d582aadc53144e08905bc {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.WXS.A.hg38 C3N-01892 LSCC WXS tissue_normal CPT0126400006 e9434614-c14c-49e8-9440-4ba994f842e7_wxs_gdc_realn.bam 37409114999 BAM harmonized CPTAC3 874afd9b-5827-44a6-bfc3-1be8532cb66d d38a6d77ae183c7b7d35fd65ae073466 {"aliquot_tag": "ALQ_5cbb9eea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01892.WXS.N C3N-01892 LSCC WXS blood_normal CPT0126440002 CPT0126440002.WholeExome.RP-1303.bam 31755596061 BAM submitted_aligned CPTAC3 a120c6cb-b5dc-41b4-859f-35d70588a55f 9272f3960bd4077ac5d67d250ca5d7ea {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01892.WXS.N.hg38 C3N-01892 LSCC WXS blood_normal CPT0126440002 9936e1e5-f01a-4b80-b2e9-13f1ce3a1bfe_wxs_gdc_realn.bam 44084485135 BAM harmonized CPTAC3 5a24a636-aa48-4983-a815-0802da4e052e 9b2321a9d70e1b04ec73fce424395037 {"aliquot_tag": "ALQ_ae56fc33", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01892.WXS.T C3N-01892 LSCC WXS tumor CPT0126390006 CPT0126390006.WholeExome.RP-1303.bam 23502471977 BAM submitted_aligned CPTAC3 6e1883e6-cd62-4733-8f41-e2ed6322c18f 3d6858c638539a2220236bebf0e87143 {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01892.WXS.T.hg38 C3N-01892 LSCC WXS tumor CPT0126390006 262aaf3d-8ee6-4cff-bce8-a0bbaf248d1e_wxs_gdc_realn.bam 32455152093 BAM harmonized CPTAC3 3f9bf1d4-7102-4b82-8033-1f2b3835f8b2 6efe4d49fe069bdbdcf85d41f461724b {"aliquot_tag": "ALQ_4caecc23", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.MethArray.Green.A C3N-01893 LSCC Methylation_Array tissue_normal CPT0126470006 203219670147_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 d49ec1c4-76ba-4f83-94d9-1cc076025539 8754c6ae2ccbe32e4d8a727efd349ab2 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.MethArray.Green.T C3N-01893 LSCC Methylation_Array tumor CPT0126450006 203219670122_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6f07d50b-e226-4176-8a4a-9d3f8c247f07 b4fe80239d64f018a869dac674c3f5dd {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.MethArray.Red.A C3N-01893 LSCC Methylation_Array tissue_normal CPT0126470006 203219670147_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 863c26ff-da12-4563-927d-c1bf0a1fe566 f9669a2a235ddaa0365fd50d0be78bfe {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.MethArray.Red.T C3N-01893 LSCC Methylation_Array tumor CPT0126450006 203219670122_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 475a9f96-ed3d-4b45-a0a4-694fcbcfa5f6 ee3ac03b6cc5252b26c78bdbb8768597 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.miRNA-Seq.A.hg38 C3N-01893 LSCC miRNA-Seq tissue_normal CPT0126470009 439b1abd-5dbd-4641-ae38-e6e402691dde_mirnaseq_gdc_realn.bam 255605097 BAM harmonized CPTAC3 4e79e043-3449-49a1-9267-efe0c465faac de5a796b310853b97f1ce620241528bc {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.miRNA-Seq.S12_L001_R1.T C3N-01893 LSCC miRNA-Seq tumor CPT0126450009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTTGTA_S12_L001_R1_001.unaln.bam 269111139 BAM S12_L001_R1 submitted_unaligned CPTAC3 7c65ec7a-c162-4246-ab02-cb1653d0cf2e 385e4565ff1de6b40105b686facf1d5f {"aliquot_tag": "ALQ_4e40c0b", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.miRNA-Seq.S41_L002_R1.A C3N-01893 LSCC miRNA-Seq tissue_normal CPT0126470009 181219_UNC31-K00269_0173_BHYGJJBBXX_TAATCG_S41_L002_R1_001.unaln.bam 230050961 BAM S41_L002_R1 submitted_unaligned CPTAC3 a33f9461-6468-48fb-bc9e-75165218a925 0b43d20dc04d293e15457573484f65dc {"aliquot_tag": "ALQ_7e245f6b", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.miRNA-Seq.T.hg38 C3N-01893 LSCC miRNA-Seq tumor CPT0126450009 ba9dc134-d2b1-4982-b717-c8753a9f481f_mirnaseq_gdc_realn.bam 297530247 BAM harmonized CPTAC3 1760d281-8ed4-4658-801e-f047355da221 24d38e373f61cc82c1aa3d74eb6fd23e {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.RNA-Seq.chimeric.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.chimeric.gdc_realn.bam 24385634 BAM chimeric harmonized CPTAC3 e43b693e-bf7a-4f2a-9a23-96f36496c477 29f9a6dd3ac695c30177c9501d136ba9 {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.RNA-Seq.chimeric.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.chimeric.gdc_realn.bam 29275566 BAM chimeric harmonized CPTAC3 af5dd776-3962-438b-b273-caab463aa105 457ede56dbce75be2c42fa1210e57d61 {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.RNA-Seq.genomic.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.genomic.gdc_realn.bam 7758043846 BAM genomic harmonized CPTAC3 512e599d-f056-4e01-be0e-b15b01f66fef 3b4f409b5866fe6642b1daba0d6bdfae {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.RNA-Seq.genomic.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.genomic.gdc_realn.bam 9221824929 BAM genomic harmonized CPTAC3 e10b2011-6f9b-48e7-b7e0-6ceeeac23666 b1d90756e8763f5ddb13150357f9982d {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.RNA-Seq.S28_L007_R1.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R1_001.fastq.gz 3985527794 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 4e602d6b-1d29-4c56-acdb-241cc128861d c4b76bbbc36937f4903df6be3ee5dc9f {"aliquot_tag": "ALQ_4e40c0b", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.RNA-Seq.S28_L007_R2.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R2_001.fastq.gz 4192059117 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 943fbee4-66f9-42ab-9a74-e81edb1d5fb1 e696fd675c1f69621960afac0d0fa242 {"aliquot_tag": "ALQ_4e40c0b", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.RNA-Seq.S2_L007_R1.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3424618552 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 17a7dd75-5afc-4255-ab09-b3b56bf1f927 90271a9553c95d02e1ceb53efc9be932 {"aliquot_tag": "ALQ_7e245f6b", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.RNA-Seq.S2_L007_R2.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3493300854 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 a69bb6ca-fcdf-4ba2-a40e-8e2cfc42293e 8d038680b510495b648befdd6108161e {"aliquot_tag": "ALQ_7e245f6b", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.RNA-Seq.transcriptome.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.transcriptome.gdc_realn.bam 9291273921 BAM transcriptome harmonized CPTAC3 b276586b-b393-4b7a-8d5b-d82feac992d8 de8847808c9b9c263d2bf1dbc0cf2f9f {"aliquot_tag": "ALQ_7e245f6b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.RNA-Seq.transcriptome.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.transcriptome.gdc_realn.bam 11631920863 BAM transcriptome harmonized CPTAC3 3d18765b-c10e-4ae2-91d2-8949ebe78339 7e6fd056456bd3028d7990c4ff6f9277 {"aliquot_tag": "ALQ_4e40c0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.WGS.A C3N-01893 LSCC WGS tissue_normal CPT0126470006 CPT0126470006.WholeGenome.RP-1303.bam 57066237444 BAM submitted_aligned CPTAC3 34157c2c-5e79-4b41-adea-17e6a1065af7 8fd68d8fdbe8be9632a5db16343bab52 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.WGS.A.hg38 C3N-01893 LSCC WGS tissue_normal CPT0126470006 7c60c534-93d8-4c7c-b33e-8d3281b79bc1_wgs_gdc_realn.bam 81967955301 BAM harmonized CPTAC3 c9c8b11f-4650-435a-8f70-2bdc4956daca 3a03dc39317719f04987b2f86fe3cbe9 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.WGS.N C3N-01893 LSCC WGS blood_normal CPT0126510002 CPT0126510002.WholeGenome.RP-1303.bam 58312849897 BAM submitted_aligned CPTAC3 16107d34-2179-47b7-bf9b-fe7cd0578a2d ca905f9bcc305d839eb79535422d2ce8 {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01893.WGS.N.hg38 C3N-01893 LSCC WGS blood_normal CPT0126510002 616d5c12-0f0b-4730-a075-3f376fee9a14_wgs_gdc_realn.bam 84790500558 BAM harmonized CPTAC3 945bd9e8-b7a0-4e0b-a1de-9ca9121057b6 d8a13bbfc15db5a94a132f1de2fb8f8e {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01893.WGS.T C3N-01893 LSCC WGS tumor CPT0126450006 CPT0126450006.WholeGenome.RP-1303.bam 55979530348 BAM submitted_aligned CPTAC3 3d3f1400-a790-4645-baec-f4bf3c921a63 a545ab8c1d7804c2fa24858361133178 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.WGS.T.hg38 C3N-01893 LSCC WGS tumor CPT0126450006 b3ded0d8-e9fe-405b-aba1-07bbb123e5c1_wgs_gdc_realn.bam 81193198745 BAM harmonized CPTAC3 a818f561-7571-4136-8eed-d3d129252a09 2f1491e4d489cb47e95b45ce3d0dc1e9 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.WXS.A C3N-01893 LSCC WXS tissue_normal CPT0126470006 CPT0126470006.WholeExome.RP-1303.bam 25923609953 BAM submitted_aligned CPTAC3 59ccab2f-436c-4265-bb21-8bd323351957 b34ed1e1bcbe5537df1e57205b509e79 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.WXS.A.hg38 C3N-01893 LSCC WXS tissue_normal CPT0126470006 7c60c534-93d8-4c7c-b33e-8d3281b79bc1_wxs_gdc_realn.bam 36009707455 BAM harmonized CPTAC3 b77ddc06-61cd-4745-9aba-a97576144810 a37b458fda01e3bf1c1bf1b94979edf9 {"aliquot_tag": "ALQ_ee9b42fa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01893.WXS.N C3N-01893 LSCC WXS blood_normal CPT0126510002 CPT0126510002.WholeExome.RP-1303.bam 25932896963 BAM submitted_aligned CPTAC3 71014661-d1d9-4089-8d25-8ade03a8f6f9 7c6ceb0a62d809b2e8e3a1db99b2e4f7 {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01893.WXS.N.hg38 C3N-01893 LSCC WXS blood_normal CPT0126510002 616d5c12-0f0b-4730-a075-3f376fee9a14_wxs_gdc_realn.bam 35964101417 BAM harmonized CPTAC3 125eae90-6a68-4939-b71c-8aefb6447a24 a2cec08c2b8e032cf45c77241258f5f3 {"aliquot_tag": "ALQ_adeaa0e6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01893.WXS.T C3N-01893 LSCC WXS tumor CPT0126450006 CPT0126450006.WholeExome.RP-1303.bam 23375809725 BAM submitted_aligned CPTAC3 8372aaaa-ebe8-4ed7-a6d9-c758a6bd83e6 662ff30867d959b639d8f7b3d9a661a1 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01893.WXS.T.hg38 C3N-01893 LSCC WXS tumor CPT0126450006 b3ded0d8-e9fe-405b-aba1-07bbb123e5c1_wxs_gdc_realn.bam 32644844364 BAM harmonized CPTAC3 26d49884-64e6-44ce-a7c5-043c28417454 4d3f77aef00add37ca98f8c5e5e686b7 {"aliquot_tag": "ALQ_945b119a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_9a84b783.MethArray.Green.T C3N-01897 PDA Methylation_Array tumor CPT0162300025 203561450103_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 341298d6-7117-4cfa-9ae1-1df6c4efa725 6adf8f38a2c8d596130c25cd5da2979a {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_9a84b783.MethArray.Red.T C3N-01897 PDA Methylation_Array tumor CPT0162300025 203561450103_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 7aeb0c1f-2097-4d30-8198-298edef0ecff 4639f4d8a2c11865ac3f36a0b9091857 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_9a84b783.WGS.T C3N-01897 PDA WGS tumor CPT0162300025 CPT0162300025.WholeGenome.RP-1303.bam 158783112189 BAM submitted_aligned CPTAC3 aae4434f-2159-45c3-8b2d-379b8ef38aac 29ad528ded704a833291589488474bb6 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_9a84b783.WGS.T.hg38 C3N-01897 PDA WGS tumor CPT0162300025 84bc5e5b-8adb-4fb6-a322-3b24daf08ec8_wgs_gdc_realn.bam 230465074591 BAM harmonized CPTAC3 bfaee155-68a0-4d46-aac6-d7e364233807 371b67958f865d6cd32e0fc3070e8e73 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_9a84b783.WXS.T C3N-01897 PDA WXS tumor CPT0162300025 CPT0162300025.WholeExome.RP-1303.bam 48974407289 BAM submitted_aligned CPTAC3 5773f62a-fd76-4ab1-b457-a9d41dc937d2 7e0032225587ada183fbb6bb4eaed399 {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_9a84b783.WXS.T.hg38 C3N-01897 PDA WXS tumor CPT0162300025 84bc5e5b-8adb-4fb6-a322-3b24daf08ec8_wxs_gdc_realn.bam 69545022042 BAM harmonized CPTAC3 55945505-5a16-4af4-bd12-9be92a741eee f3983d6f5d74254abe653aad11e5129f {"aliquot_tag": "DUP_9a84b783", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_b81fa86b.MethArray.Green.T C3N-01897 PDA Methylation_Array tumor CPT0162300019 203561450041_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2578100b-bba0-4119-abc5-4327f7783aed aa4c1351fadfe29a4c62661450cfe830 {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_b81fa86b.MethArray.Red.T C3N-01897 PDA Methylation_Array tumor CPT0162300019 203561450041_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 f46d2bb9-f6c8-4628-aaaa-e49c785f150c 18027a025dd8b5669ab3140f44605484 {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_b81fa86b.WGS.T C3N-01897 PDA WGS tumor CPT0162300019 CPT0162300019.WholeGenome.RP-1303.bam 71954267535 BAM submitted_aligned CPTAC3 fe784f88-7159-420c-a239-70c9dc208a23 f75dcf4addda7659a7aaaf56fdc5771b {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_b81fa86b.WGS.T.hg38 C3N-01897 PDA WGS tumor CPT0162300019 6096e349-183e-41d9-8d19-8dc690c9137e_wgs_gdc_realn.bam 103897361685 BAM harmonized CPTAC3 3b765381-ef4c-4756-bada-8f5238668016 0e5025377845d086cef73a029e0c87df {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_b81fa86b.WXS.T C3N-01897 PDA WXS tumor CPT0162300019 CPT0162300019.WholeExome.RP-1303.bam 68103574759 BAM submitted_aligned CPTAC3 dec364d2-cc30-4ed1-8fbe-81ecd61f016f 9396ce327577e44dbfa21202ad7b257a {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.DUP_b81fa86b.WXS.T.hg38 C3N-01897 PDA WXS tumor CPT0162300019 6096e349-183e-41d9-8d19-8dc690c9137e_wxs_gdc_realn.bam 94888641588 BAM harmonized CPTAC3 9275086f-3c69-403f-9051-2c857279c158 4fd17ea762785c62b06eaac8819e4c97 {"aliquot_tag": "DUP_b81fa86b", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.miRNA-Seq.S3_L002_R1.T C3N-01897 PDA miRNA-Seq tumor CPT0162300016 190108_UNC31-K00269_0176_AHYGLVBBXX_TTAGGC_S3_L002_R1_001.unaln.bam 170805407 BAM S3_L002_R1 submitted_unaligned CPTAC3 647b8a60-ede8-42cb-8ecd-803f74d97945 3eedc53c5ccdc6ea838dadcb88cbcacb {"aliquot_tag": "ALQ_28a0b5fa", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.miRNA-Seq.T.hg38 C3N-01897 PDA miRNA-Seq tumor CPT0162300016 1ae4985d-1671-490c-86f9-b699cd136111_mirnaseq_gdc_realn.bam 191030037 BAM harmonized CPTAC3 ee1d3e3b-da43-4fb7-b3ad-44c7c946bbb9 8a3914b550293d97d61ef06d39ea8e99 {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.RNA-Seq.chimeric.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.chimeric.gdc_realn.bam 18310796 BAM chimeric harmonized CPTAC3 92f9203c-5bc4-4177-815e-7525f01e5427 5b642fd068e8470bdf8c35127219eadb {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.RNA-Seq.genomic.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.genomic.gdc_realn.bam 12076518929 BAM genomic harmonized CPTAC3 a187e914-dd4a-4844-a928-31ce5b57e001 b10aaa4d15eb584995a5b1a51c53a61d {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.RNA-Seq.S5_L002_R1.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R1_001.fastq.gz 3621322188 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 393c145c-4d08-45f0-bd45-efd44aa457d4 3f77f0ba65221b1153bc417e2d3634a8 {"aliquot_tag": "ALQ_28a0b5fa", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.RNA-Seq.S5_L002_R2.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R2_001.fastq.gz 3895274347 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 ec5a4c86-6c49-41a3-b04a-4983b4862110 0985057cf12dc9579f5bff00f2be9924 {"aliquot_tag": "ALQ_28a0b5fa", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.RNA-Seq.transcriptome.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.transcriptome.gdc_realn.bam 8895724461 BAM transcriptome harmonized CPTAC3 9a68ebb1-f657-43c1-a093-a07153bca574 555a4687d9fbaf0f5f0adf1096a7d115 {"aliquot_tag": "ALQ_28a0b5fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01897.WGS.N C3N-01897 PDA WGS blood_normal CPT0162360002 CPT0162360002.WholeGenome.RP-1303.bam 78111846322 BAM submitted_aligned CPTAC3 47c10473-1eb8-4915-9f71-1b37cc89d09e 1cd0eadfec21242f528c8d35da82cb5a {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01897.WGS.N.hg38 C3N-01897 PDA WGS blood_normal CPT0162360002 3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wgs_gdc_realn.bam 111496052020 BAM harmonized CPTAC3 d97d2ce5-d2dc-48f3-8918-b4023e0d16c0 e1c7be3889a846c5ab3a1ee84df0c3d9 {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01897.WXS.N C3N-01897 PDA WXS blood_normal CPT0162360002 CPT0162360002.WholeExome.RP-1303.bam 21906030833 BAM submitted_aligned CPTAC3 e40ea4d3-8d13-42a4-8b2e-e774765273b7 788367c611fda17a8bba118ec3df2f0b {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01897.WXS.N.hg38 C3N-01897 PDA WXS blood_normal CPT0162360002 3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wxs_gdc_realn.bam 30186380588 BAM harmonized CPTAC3 9eacaf4b-96a4-4053-b3cb-c725c77a347b 011dd0f8e3dbd30c9774ac7ab141ce79 {"aliquot_tag": "ALQ_b996b502", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01897.WXS.T C3N-01897 PDA WXS tumor CPT0162300021 CPT0162300021.WholeExome.RP-1303.bam 37517675995 BAM submitted_aligned CPTAC3 a8f404b2-3e0b-481b-b81b-2cc0d68e8296 be207ab67d0c5d54938be3d03dbb461a {"aliquot_tag": "ALQ_9de9739a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.ANN_d44580ff.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.chimeric.gdc_realn.bam 289228792 BAM chimeric harmonized CPTAC3 acdee08f-d4a5-4fd3-80f2-35c2cf7d4299 6e92dd1b824ad56ee326141af008b606 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.ANN_d44580ff.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.genomic.gdc_realn.bam 8543070025 BAM genomic harmonized CPTAC3 070ffc1c-31af-4363-a21e-9d9701e6de1c 85b3d5c4cea6728e6352eecb1bf19b02 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.ANN_d44580ff.RNA-Seq.S10_L007_R1.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R1_001.fastq.gz 3316609926 FASTQ S10_L007_R1 submitted_unaligned CPTAC3 694277e7-1aff-43fb-8e21-b273a0c01c0c c1e841ac4e503251103bbeebbb84d3a0 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.ANN_d44580ff.RNA-Seq.S10_L007_R2.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R2_001.fastq.gz 3701937380 FASTQ S10_L007_R2 submitted_unaligned CPTAC3 a19de46c-14a1-4ce2-b5d4-a9b165d0de3c ae2f903c68f12ed0b289f0c01dbf17e5 {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S10", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.ANN_d44580ff.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.transcriptome.gdc_realn.bam 9306202193 BAM transcriptome harmonized CPTAC3 70fc8ddd-d683-435a-978e-32ffe2459a24 92ac23deb7105a4d4939b285e70c064b {"aliquot_tag": "ANN_d44580ff", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_2ae69cb9.WXS.T C3N-01898 PDA WXS tumor CPT0162380036 CPT0162380036.WholeExome.RP-1303.bam 24609711611 BAM submitted_aligned CPTAC3 f55b2b16-ec4f-41fd-91b1-040f0ed14f07 d9eb9772171cef19621447c72c5f6e9f {"aliquot_tag": "DUP_2ae69cb9", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_2ae69cb9.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380036 cd1f7189-9831-45a1-84a6-3da46157af2f_wxs_gdc_realn.bam 33886822915 BAM harmonized CPTAC3 cb728c75-d293-4d51-8fc2-d7bb149df890 b63571735ed7461fd71608e9e3c8d68d {"aliquot_tag": "DUP_2ae69cb9", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_6081859f.RNA-Seq.chimeric.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.chimeric.gdc_realn.bam 114455235 BAM chimeric harmonized CPTAC3 96120554-bff3-4ef4-8bf5-277d28ae620e 09dc027828665a4bf459407ac56db228 {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_6081859f.RNA-Seq.genomic.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.genomic.gdc_realn.bam 9921411183 BAM genomic harmonized CPTAC3 2360c285-6f1a-4ed4-81f8-59eb4e9e3f97 c08c6461be18a3210be0dfc064e7fc0b {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_6081859f.RNA-Seq.S3_L004_R1.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R1_001.fastq.gz 3603292349 FASTQ S3_L004_R1 submitted_unaligned CPTAC3 8ff8e21d-54cc-491e-a2e8-c7e5e50f0a08 86aac5a81dbc4a4698d9c3a0b867a095 {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_6081859f.RNA-Seq.S3_L004_R2.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R2_001.fastq.gz 3993881614 FASTQ S3_L004_R2 submitted_unaligned CPTAC3 77accb30-a7ff-4041-a7b9-17f73e1a050e 5fe427ddbb709e38bcb3f718ce60cbc4 {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S3", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_6081859f.RNA-Seq.transcriptome.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.transcriptome.gdc_realn.bam 9745584213 BAM transcriptome harmonized CPTAC3 8c9ee4f3-1eb0-4a55-8d82-60f6080c8d36 9bf3de58b4922dd17e008ea8d48797bd {"aliquot_tag": "DUP_6081859f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_6c730aca.WXS.N C3N-01898 PDA WXS blood_normal CPT0162430002 CPT0162430002.WholeExome.RP-1303.bam 40578557515 BAM submitted_aligned CPTAC3 7930cce0-4217-41b4-b16b-572942a228f6 25f17f0f0192a389864e36cdc548a9ee {"aliquot_tag": "DUP_6c730aca", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01898.DUP_6c730aca.WXS.N.hg38 C3N-01898 PDA WXS blood_normal CPT0162430002 c19a5631-ff53-4b04-a6ca-24781f51dc1e_wxs_gdc_realn.bam 55346006314 BAM harmonized CPTAC3 0cb73006-aa4b-4b91-8cd6-cbe7b1aec6d2 b0bb49c32a9c82a4de641163b1055ce8 {"aliquot_tag": "DUP_6c730aca", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01898.DUP_b1a486fb.RNA-Seq.chimeric.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.chimeric.gdc_realn.bam 141720652 BAM chimeric harmonized CPTAC3 5ed86af5-eef1-4926-8d58-3a5f678d6463 b8decf81857875518357ee6d66f202a8 {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_b1a486fb.RNA-Seq.genomic.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.genomic.gdc_realn.bam 11648415617 BAM genomic harmonized CPTAC3 42a01c85-9928-4e68-bd70-142a8d5be7ff 5c22e53c83680a2aed53b2b85982a694 {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_b1a486fb.RNA-Seq.S20_L005_R1.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4388440413 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 b6230e00-8866-4a1c-8644-87ff6ab0e7a0 eec1cf3a5e102a74e36886a97a80808d {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_b1a486fb.RNA-Seq.S20_L005_R2.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4991190095 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 7189c36c-5a0d-417c-a6ce-596ade47f0fb 549574b34fb874ef2659daab7400a8c0 {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_b1a486fb.RNA-Seq.transcriptome.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.transcriptome.gdc_realn.bam 12221713256 BAM transcriptome harmonized CPTAC3 152ca52f-2d8e-416e-850e-5b263f60b6e7 21f3095383bacd4dd924be06c2f6794e {"aliquot_tag": "DUP_b1a486fb", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01898.DUP_b3efcd03.WXS.T C3N-01898 PDA WXS tumor CPT0162380035 CPT0162380035.WholeExome.RP-1303.bam 39334148105 BAM submitted_aligned CPTAC3 dd300ded-f8e4-4a08-820b-17ceed338a06 21d69d0e85a6e4520c8de97d3638fed4 {"aliquot_tag": "DUP_b3efcd03", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_b3efcd03.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380035 a04f033e-bcb2-4a8c-8318-bc7f0ab75be7_wxs_gdc_realn.bam 54248662440 BAM harmonized CPTAC3 7ac7c285-ba1c-4746-86e5-f20a05c66a93 d3999babff524e32d57081aa070db7fc {"aliquot_tag": "DUP_b3efcd03", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_c4e8fd95.WXS.T C3N-01898 PDA WXS tumor CPT0162380034 CPT0162380034.WholeExome.RP-1303.bam 28204889544 BAM submitted_aligned CPTAC3 13b6317e-cdf3-4831-b061-db183c85a2e2 e05e70af153dff9f01916d7ff691b805 {"aliquot_tag": "DUP_c4e8fd95", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_c4e8fd95.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380034 9ffaf767-e38d-4837-bba4-ab3e2d422e57_wxs_gdc_realn.bam 38890490285 BAM harmonized CPTAC3 c3420a31-d82b-4f1a-b441-2144141db1e8 55e58555111bc41e8a54a5b3d5a2f2bf {"aliquot_tag": "DUP_c4e8fd95", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_fbc39fdd.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.chimeric.gdc_realn.bam 305981281 BAM chimeric harmonized CPTAC3 c161c8e7-3f0c-426f-b330-7874a9a9c5c9 2678a8e3c24a4500c6d4018a99b81aff {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_fbc39fdd.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.genomic.gdc_realn.bam 7873936414 BAM genomic harmonized CPTAC3 5482c003-ba9d-4641-a4c4-58a4846eecd3 835bc07a8b68cffe65d12c8cf2fb2cf5 {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_fbc39fdd.RNA-Seq.S23_L007_R1.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R1_001.fastq.gz 3819049850 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 bb03b0cb-df02-4f7b-b520-d3c19bd58ba5 9433c61dd6d5b14f4f00fcb75c9428c8 {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_fbc39fdd.RNA-Seq.S23_L007_R2.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R2_001.fastq.gz 4114846089 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 125f919b-f479-4b86-9fed-7c6be5aec2fa 375d150e748b36ad5d0e6ce37218c91c {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01898.DUP_fbc39fdd.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.transcriptome.gdc_realn.bam 10005211197 BAM transcriptome harmonized CPTAC3 29aa0317-de25-4d27-8532-b682b8fdb99f 3c7a3d3c19e8701058ba532623a731eb {"aliquot_tag": "DUP_fbc39fdd", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.ANN_46d74460.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.chimeric.gdc_realn.bam 300363036 BAM chimeric harmonized CPTAC3 f86cc43c-fa8b-49a1-8aa5-be5c25ca54cd d72553738de7900286960821029efa67 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.ANN_46d74460.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.genomic.gdc_realn.bam 8758527403 BAM genomic harmonized CPTAC3 10b46424-f686-4607-9e6d-fcff89e41b19 9c0a6acc882fcd6f82a02cac17edd194 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.ANN_46d74460.RNA-Seq.S14_L008_R1.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R1_001.fastq.gz 3734049373 FASTQ S14_L008_R1 submitted_unaligned CPTAC3 d7b1e5cb-031f-4fbf-b7ed-351cbedff5d0 61c9b289bd2f99bb2c3cf02bf0f7e3f9 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.ANN_46d74460.RNA-Seq.S14_L008_R2.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R2_001.fastq.gz 4458738039 FASTQ S14_L008_R2 submitted_unaligned CPTAC3 d394d5b2-2762-4c60-b68d-fcfb9ea43bbf 1c2ead47fa98f1cebeb8811d1da804a0 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S14", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.ANN_46d74460.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.transcriptome.gdc_realn.bam 11330582475 BAM transcriptome harmonized CPTAC3 0a1eb73f-fbab-4c7c-8c10-cb4a3d4c65d9 1490f5b6f1c511e70ce07c21dbd61358 {"aliquot_tag": "ANN_46d74460", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_186c0ff1.RNA-Seq.chimeric.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.chimeric.gdc_realn.bam 148827313 BAM chimeric harmonized CPTAC3 f59ceef7-8343-4d0c-affb-b42abd7a13dd 875e6f9007eb7f51dc80a96286fef353 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01899.DUP_186c0ff1.RNA-Seq.genomic.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.genomic.gdc_realn.bam 6631438888 BAM genomic harmonized CPTAC3 7ee77e92-fe31-4756-8c22-c8674a78adb6 aeb62b88458f9e7604410b26e33f2c4b {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01899.DUP_186c0ff1.RNA-Seq.S19_L005_R1.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 3244064181 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 f8a107fa-2560-4f3b-9b30-082ccbb5d73f 0e8a32736f161c444f7cd3b3e0e29da2 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01899.DUP_186c0ff1.RNA-Seq.S19_L005_R2.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 3508298852 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 674546be-2b9e-4bbf-ace0-318d7d6b1ff7 78e4e91a34ffc8484ac745a1656a7237 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01899.DUP_186c0ff1.RNA-Seq.transcriptome.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.transcriptome.gdc_realn.bam 8655136604 BAM transcriptome harmonized CPTAC3 b4bf2bae-7c45-4e79-ac13-8d9c18bd82bd 768ba96f565ff634f96ddcc6aa848f23 {"aliquot_tag": "DUP_186c0ff1", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01899.DUP_1e566bd4.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.chimeric.gdc_realn.bam 349050446 BAM chimeric harmonized CPTAC3 d5d2444e-4687-428f-90fc-233f7157c274 99eccf84af5f7b6cff112161bf71b6dc {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_1e566bd4.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.genomic.gdc_realn.bam 7716956261 BAM genomic harmonized CPTAC3 c982688b-458a-4658-b6d3-19363ba32877 e836374091503ef04a1e75d0ad384329 {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_1e566bd4.RNA-Seq.S1_L004_R1.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R1_001.fastq.gz 3667226686 FASTQ S1_L004_R1 submitted_unaligned CPTAC3 f0d15fc4-e90e-40f1-95be-34300afdbd25 83040d638708313c96180cc6f804428e {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_1e566bd4.RNA-Seq.S1_L004_R2.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R2_001.fastq.gz 3832205652 FASTQ S1_L004_R2 submitted_unaligned CPTAC3 ab7f2e71-93c5-4947-9286-05994fae65aa fdbbc4669a63d96cc6b83dc52dddfc9c {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_1e566bd4.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.transcriptome.gdc_realn.bam 9753290342 BAM transcriptome harmonized CPTAC3 cdada004-3728-440c-8c25-0640eee368a1 8c29125abff587f66a0efd6796378e7a {"aliquot_tag": "DUP_1e566bd4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_217d099c.WXS.T C3N-01899 PDA WXS tumor CPT0162450034 CPT0162450034.WholeExome.RP-1303.bam 21688029245 BAM submitted_aligned CPTAC3 6f2e5eb8-8b64-4d26-8834-7ae506f36a38 1ae47bf1ed6dbb2abb4d4b74a32a0515 {"aliquot_tag": "DUP_217d099c", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_217d099c.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450034 c2bc2e43-e735-4a74-a78a-5ad7f9dfb4ce_wxs_gdc_realn.bam 29949678812 BAM harmonized CPTAC3 96ed209d-ca09-4aed-b304-99ebdfdfae70 f0e88708f27c889d5583db3a91c7d89f {"aliquot_tag": "DUP_217d099c", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_567a390a.WXS.T C3N-01899 PDA WXS tumor CPT0162450035 CPT0162450035.WholeExome.RP-1303.bam 31073047341 BAM submitted_aligned CPTAC3 4c4d7191-9aaa-4bc2-8738-95f3e6fa3550 425a1658738054a5979f1e2c39cf9582 {"aliquot_tag": "DUP_567a390a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_567a390a.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450035 8e055081-713b-4196-932a-2ee5a04db44e_wxs_gdc_realn.bam 42880039006 BAM harmonized CPTAC3 a8e3fd14-80f3-4fe4-b53b-1128d6131340 f4b3aed1b4f89aa9dbb8ac01cf4f10a7 {"aliquot_tag": "DUP_567a390a", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_6e3c9f5b.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.chimeric.gdc_realn.bam 424178710 BAM chimeric harmonized CPTAC3 e27bf4ae-d6d8-4151-b000-a638c33c53b4 f895bd669ad3f5cc3a6eb212e53b1178 {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_6e3c9f5b.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.genomic.gdc_realn.bam 9095675614 BAM genomic harmonized CPTAC3 66afcd3b-76a3-4a5b-9122-818ee6c60983 5445223f59abfd22396fc5c2289d4dcb {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_6e3c9f5b.RNA-Seq.S17_L005_R1.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R1_001.fastq.gz 3684643460 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 2cbcaabc-587b-4fc1-9deb-27104406fc9a f2cf3e28b81e254cc24d249d4cf61ea7 {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_6e3c9f5b.RNA-Seq.S17_L005_R2.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R2_001.fastq.gz 3987289186 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 768fb307-e987-4073-9ad0-b027904a6892 b00094f7e19e423a77c5586f9d00198e {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_6e3c9f5b.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.transcriptome.gdc_realn.bam 9865725796 BAM transcriptome harmonized CPTAC3 3329c79d-e944-4b4e-850e-009f08274e50 0f815709aea30ce1db06a7faae08079c {"aliquot_tag": "DUP_6e3c9f5b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_cf7368b0.WXS.T C3N-01899 PDA WXS tumor CPT0162450036 CPT0162450036.WholeExome.RP-1303.bam 26720318771 BAM submitted_aligned CPTAC3 19074838-d206-4af4-bfe1-1b875e0eaca7 e4f3fd08d4c86fa2a7161b6685027de4 {"aliquot_tag": "DUP_cf7368b0", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_cf7368b0.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450036 367fe4ff-5a2e-4cb8-acd4-777fe8b3499d_wxs_gdc_realn.bam 37666160591 BAM harmonized CPTAC3 38fb1142-7649-4b70-a4cd-b4ac272297c7 ea9afb96aefb52eecf33e7aa860e0edd {"aliquot_tag": "DUP_cf7368b0", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01899.DUP_e08fa3bf.WXS.N C3N-01899 PDA WXS blood_normal CPT0162500002 CPT0162500002.WholeExome.RP-1303.bam 25576856902 BAM submitted_aligned CPTAC3 14b6816a-4b7d-4b6a-ae83-e7fe6af167df 79f16f28f0f0cfd5cf73e0e583b6c065 {"aliquot_tag": "DUP_e08fa3bf", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01899.DUP_e08fa3bf.WXS.N.hg38 C3N-01899 PDA WXS blood_normal CPT0162500002 d0c12dcc-5016-4c9d-bc4c-70283f9ae2c7_wxs_gdc_realn.bam 34693543392 BAM harmonized CPTAC3 8897643b-c9fd-41bc-be7a-adc6ebc44a0a 925d14e9a77b7f172ef7b036b22c18e6 {"aliquot_tag": "DUP_e08fa3bf", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01900.MethArray.Green.T C3N-01900 PDA Methylation_Array tumor CPT0162600008 203561450102_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 ec22480d-960c-450f-baec-b3dded6df11e 09b4fb5fe64e9ad2e57a41fe8276cba7 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.MethArray.Red.T C3N-01900 PDA Methylation_Array tumor CPT0162600008 203561450102_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 c23e280e-05d6-4622-bf1d-e81bd5d26b1d 1c71e1893f19bd15410a324ed0112c8e {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.miRNA-Seq.S1_L004_R1.T C3N-01900 PDA miRNA-Seq tumor CPT0162600011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L004_R1_001.unaln.bam 255444431 BAM S1_L004_R1 submitted_unaligned CPTAC3 4052e1de-db18-4cb2-92a5-ba03ae107ca1 d91c572808973e9bcea5336e1e3c5390 {"aliquot_tag": "ALQ_e609b1ea", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.miRNA-Seq.T.hg38 C3N-01900 PDA miRNA-Seq tumor CPT0162600011 5b89d8c0-d217-4877-8462-371e7444a63b_mirnaseq_gdc_realn.bam 291362867 BAM harmonized CPTAC3 d1f04ef1-4d47-41d1-be33-2ff045e98292 508addf9ee7f8200b22c6ebdbac09105 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.RNA-Seq.chimeric.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.chimeric.gdc_realn.bam 32688359 BAM chimeric harmonized CPTAC3 27ec9a8a-d1fa-46d3-9da2-3194cd27e52c e687e3874734986a04c6cae05de303b4 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.RNA-Seq.genomic.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.genomic.gdc_realn.bam 8025300788 BAM genomic harmonized CPTAC3 3823ef8a-b33b-45af-a87c-61dbddcf95a9 7bfe3cc51ef4a2ef5722ce55b7eca1c0 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.RNA-Seq.S11_L003_R1.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R1_001.fastq.gz 3903330593 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 eb3070e5-30fc-4105-bf8f-05f278a1bd7c e46b1dcc552274f6d846b1ed8b502f8d {"aliquot_tag": "ALQ_e609b1ea", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.RNA-Seq.S11_L003_R2.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R2_001.fastq.gz 4027328450 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 8c2f2b11-752e-4bdf-b0c0-facfe7ddf8b6 2207c692103b32c4c0a442e632a691aa {"aliquot_tag": "ALQ_e609b1ea", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.RNA-Seq.transcriptome.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.transcriptome.gdc_realn.bam 9861392087 BAM transcriptome harmonized CPTAC3 7c2c9947-8d9a-4e40-a593-50556c15c26c 63b3e67d8c506f7ed16e254bee0e6de5 {"aliquot_tag": "ALQ_e609b1ea", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.WGS.N C3N-01900 PDA WGS blood_normal CPT0162650002 CPT0162650002.WholeGenome.RP-1303.bam 82132845318 BAM submitted_aligned CPTAC3 003f14a5-61fb-47c6-b265-cd9c5972bc28 606a3edd0688bf296cbc1f669293e0cf {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01900.WGS.N.hg38 C3N-01900 PDA WGS blood_normal CPT0162650002 0dfe243e-8f6a-4b2d-8673-47e054f8ee47_wgs_gdc_realn.bam 119788131076 BAM harmonized CPTAC3 f14d8add-124c-416b-a15b-cecb1eaba671 786348a2336066485009603c815a4fbd {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01900.WGS.T C3N-01900 PDA WGS tumor CPT0162600008 CPT0162600008.WholeGenome.RP-1303.bam 108001796768 BAM submitted_aligned CPTAC3 91e76fca-0e81-462d-9e48-1c90c7e2c041 da5f31cef2962c553a293cca8eb6ce5a {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.WGS.T.hg38 C3N-01900 PDA WGS tumor CPT0162600008 8db438fc-c9df-45ba-abff-f51c8d934b85_wgs_gdc_realn.bam 157701721401 BAM harmonized CPTAC3 dbff5b49-5192-4fc4-ba11-71be2b243e7f 968a91e7ecc5320ea47d5be8c8456ee3 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.WXS.N C3N-01900 PDA WXS blood_normal CPT0162650002 CPT0162650002.WholeExome.RP-1303.bam 39195302756 BAM submitted_aligned CPTAC3 129d0c4a-592e-491f-8409-50624f24d49a bdfc2c6aca66f95e318f265682e00d53 {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01900.WXS.N.hg38 C3N-01900 PDA WXS blood_normal CPT0162650002 0dfe243e-8f6a-4b2d-8673-47e054f8ee47_wxs_gdc_realn.bam 53550822913 BAM harmonized CPTAC3 b1890b30-dc40-416c-b83e-0be6a9b1de65 1366329de00908a36c5138cc748af6a1 {"aliquot_tag": "ALQ_aefb5e61", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01900.WXS.T C3N-01900 PDA WXS tumor CPT0162600008 CPT0162600008.WholeExome.RP-1303.bam 58301362036 BAM submitted_aligned CPTAC3 7573adb5-cabf-4bbd-bb12-45092b384986 3d49e94af3a6b56de2edd4e6f0a65674 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01900.WXS.T.hg38 C3N-01900 PDA WXS tumor CPT0162600008 8db438fc-c9df-45ba-abff-f51c8d934b85_wxs_gdc_realn.bam 81700185149 BAM harmonized CPTAC3 f639e770-6a95-4af4-85b7-8b29ba52f3d9 ddc9a1a110ebc2afafb9e8cd8d663f21 {"aliquot_tag": "ALQ_86ce380f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01902.MethArray.Green.A C3N-01902 CCRCC Methylation_Array tissue_normal CPT0181270006 204930640024_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 725f4a86-4738-4047-8414-986a362b3b49 382f830b8bd38c774aec31da7eabd49e {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.MethArray.Green.T C3N-01902 CCRCC Methylation_Array tumor CPT0181260006 203219720211_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 7f6e8260-a06e-4125-b2bb-bf3890bb1c8f 810caf058ae9957f5682f6db7aaf2aac {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.MethArray.Red.A C3N-01902 CCRCC Methylation_Array tissue_normal CPT0181270006 204930640024_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 a7045016-932c-468c-9b72-b4e3652b167d 1c99e45066a145edb4a6d20780c26a44 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.MethArray.Red.T C3N-01902 CCRCC Methylation_Array tumor CPT0181260006 203219720211_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 714e57fe-1fd9-45ab-b0e6-57e3e022cf85 ee07d58e0140fa648bbafd73460cf1cf {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.miRNA-Seq.A.hg38 C3N-01902 CCRCC miRNA-Seq tissue_normal CPT0181270009 263b4bbd-079f-4441-b260-18986ed58a65_mirnaseq_gdc_realn.bam 276410420 BAM harmonized CPTAC3 20df0565-0fc5-40f0-a423-13cad35039d4 cfa75dc8935bea0de533f69866a84adc {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.miRNA-Seq.S45_L005_R1.T C3N-01902 CCRCC miRNA-Seq tumor CPT0181260008 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L005_R1_001.unaln.bam 213804109 BAM S45_L005_R1 submitted_unaligned CPTAC3 89238f3c-fc90-4f25-b984-03474ac49ca9 246c862cddc1b42765e932886c78c7b5 {"aliquot_tag": "ALQ_b67d8716", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.miRNA-Seq.S46_L005_R1.A C3N-01902 CCRCC miRNA-Seq tissue_normal CPT0181270009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L005_R1_001.unaln.bam 250360607 BAM S46_L005_R1 submitted_unaligned CPTAC3 3ef42265-9682-41cf-8c76-103327d6ecbe 4db2adc4fba688911808ba2197b72208 {"aliquot_tag": "ALQ_fc1a9e30", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.miRNA-Seq.T.hg38 C3N-01902 CCRCC miRNA-Seq tumor CPT0181260008 8891103b-753c-431d-87b7-0220040a31f9_mirnaseq_gdc_realn.bam 239779553 BAM harmonized CPTAC3 dc6e0568-689d-401a-9173-09cf08bcc18d 22668b5d11443ea20b376a74f337a6ca {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.RNA-Seq.chimeric.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.chimeric.gdc_realn.bam 29423841 BAM chimeric harmonized CPTAC3 d0985b4c-371b-4ffc-9538-28c156e3d67e 2eafb23b193f35652323e2f781c992c1 {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.RNA-Seq.chimeric.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.chimeric.gdc_realn.bam 39117872 BAM chimeric harmonized CPTAC3 d4afbe92-ea71-41ca-9386-32133a4edaf4 03ae49867e54fc4a9c0ef4f5c298641d {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.RNA-Seq.genomic.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.genomic.gdc_realn.bam 7770817615 BAM genomic harmonized CPTAC3 5aa07644-8f46-47f6-99ec-e162445d1bfc af6ad2e069b91e88efb5c9948dac1011 {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.RNA-Seq.genomic.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.genomic.gdc_realn.bam 8065592386 BAM genomic harmonized CPTAC3 483d8869-efb6-4d6f-bd9a-bb3a93e8e581 fd43c35758c4e1486be1fdae4d681777 {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.RNA-Seq.S5_L002_R1.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R1_001.fastq.gz 3778794556 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 887a0ad3-d1e7-4d10-af01-e5918562f524 f819513946e0a539baae6a70c9fc56ce {"aliquot_tag": "ALQ_b67d8716", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.RNA-Seq.S5_L002_R2.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R2_001.fastq.gz 4109566650 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 86aec419-ac8b-492c-af9a-092baeaab6eb ddf1448d8409f79ee89881b16affe04c {"aliquot_tag": "ALQ_b67d8716", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.RNA-Seq.S6_L002_R1.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R1_001.fastq.gz 3646283706 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 9892b3ac-a2cd-4199-a0bc-7c1e9fc0a1d9 3222ec5c28a405def937eefe964cb415 {"aliquot_tag": "ALQ_fc1a9e30", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.RNA-Seq.S6_L002_R2.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R2_001.fastq.gz 3901216772 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 69d98970-62de-4d6d-b8bc-3b522702970d b6c43035ba488314f19c7dd0e5aea0cb {"aliquot_tag": "ALQ_fc1a9e30", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.RNA-Seq.transcriptome.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.transcriptome.gdc_realn.bam 10154293207 BAM transcriptome harmonized CPTAC3 5d842637-548b-4c3c-8aa2-a0365f98271e c8baae483ec083154a630605d35253a7 {"aliquot_tag": "ALQ_fc1a9e30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.RNA-Seq.transcriptome.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.transcriptome.gdc_realn.bam 9595301513 BAM transcriptome harmonized CPTAC3 e97aff21-2ecd-4c39-b4b6-7d2d2dd28aae 54f9884c91cb12ab768efdff7ddca7b0 {"aliquot_tag": "ALQ_b67d8716", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.WGS.A C3N-01902 CCRCC WGS tissue_normal CPT0181270006 CPT0181270006.WholeGenome.RP-1303.bam 58202752135 BAM submitted_aligned CPTAC3 76fe685b-5659-4723-be68-a13b169ac50b 13c1b208a0b5c168e91beb5f0a67ace1 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.WGS.A.hg38 C3N-01902 CCRCC WGS tissue_normal CPT0181270006 f4ffaada-ca69-4f50-9584-5cd222daf5ec_wgs_gdc_realn.bam 86052733025 BAM harmonized CPTAC3 1c59084d-55d6-47a0-8c4c-9fb76be5fb44 178c9f89d4ff06a12a9527a524a903b7 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.WGS.N C3N-01902 CCRCC WGS blood_normal CPT0181310002 CPT0181310002.WholeGenome.RP-1303.bam 74611143802 BAM submitted_aligned CPTAC3 2779ca34-edad-4db5-bcc8-735df55188ee 31589706343ac4433e2a0d8b3249c0b9 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01902.WGS.N.hg38 C3N-01902 CCRCC WGS blood_normal CPT0181310002 f34ef635-eb3c-4e89-b20e-d270e1f8172c_wgs_gdc_realn.bam 109716815091 BAM harmonized CPTAC3 7027a8e9-97aa-4737-8e9b-7d04261247a0 30ee39e9f46bfd9ae5819361b42c0a26 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01902.WGS.T C3N-01902 CCRCC WGS tumor CPT0181260006 CPT0181260006.WholeGenome.RP-1303.bam 60444833188 BAM submitted_aligned CPTAC3 647d781f-02f9-4bd9-8f08-b92d09668884 94dba18701e26f080924062564d1b093 {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.WGS.T.hg38 C3N-01902 CCRCC WGS tumor CPT0181260006 83647d70-fefe-496f-9bae-43665b9210ce_wgs_gdc_realn.bam 88239675167 BAM harmonized CPTAC3 2ea6b3f2-2947-4600-a452-de9d58f5be80 bc65211963571d8bf41f00e8822b1134 {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.WXS.A C3N-01902 CCRCC WXS tissue_normal CPT0181270006 CPT0181270006.WholeExome.RP-1303.bam 20141452571 BAM submitted_aligned CPTAC3 b4a39fb2-1c10-4ad9-85d8-06c76be9d1b4 584788842f09b0d99bddc8c6c3290b61 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.WXS.A.hg38 C3N-01902 CCRCC WXS tissue_normal CPT0181270006 f4ffaada-ca69-4f50-9584-5cd222daf5ec_wxs_gdc_realn.bam 27491757236 BAM harmonized CPTAC3 3f7951ee-195d-42d6-bd9f-1777b163806c e1894a253d666699fdaf3f5d52e8ce97 {"aliquot_tag": "ALQ_6ca583a1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01902.WXS.N C3N-01902 CCRCC WXS blood_normal CPT0181310002 CPT0181310002.WholeExome.RP-1303.bam 22282364539 BAM submitted_aligned CPTAC3 224c642a-0d69-4d7d-bf11-9f8a65a18599 0a82cf47807221209352afd92ee95429 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01902.WXS.N.hg38 C3N-01902 CCRCC WXS blood_normal CPT0181310002 f34ef635-eb3c-4e89-b20e-d270e1f8172c_wxs_gdc_realn.bam 30616812495 BAM harmonized CPTAC3 530dbc50-cee2-4edf-b8c3-f383cac66c33 350781e63c6f73fd51490b5a24117561 {"aliquot_tag": "ALQ_2fd461bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01902.WXS.T C3N-01902 CCRCC WXS tumor CPT0181260006 CPT0181260006.WholeExome.RP-1303.bam 29423843119 BAM submitted_aligned CPTAC3 6f56577d-e40e-4c1d-b766-cd92c90ec268 dbea4288b7567e30528aae80427481bb {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01902.WXS.T.hg38 C3N-01902 CCRCC WXS tumor CPT0181260006 83647d70-fefe-496f-9bae-43665b9210ce_wxs_gdc_realn.bam 40150255052 BAM harmonized CPTAC3 95c3184b-9a58-4359-9adb-59fa6cea4269 208bb4335fdc0b64bb325c39c4e3eff2 {"aliquot_tag": "ALQ_51c5aa11", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01903.MethArray.Green.A C3N-01903 CCRCC Methylation_Array tissue_normal CPT0381210009 205549600088_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d9742a9a-2961-45ce-9bdf-6d20b8a22a37 b9a00731017ed0dd4bff4996b761fd92 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.MethArray.Green.T C3N-01903 CCRCC Methylation_Array tumor CPT0381170009 205589730156_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 1162e684-5ea6-433b-81a9-bf2c6e20daa7 a97e457bc9d35a963651d5f2d2a33a07 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.MethArray.Red.A C3N-01903 CCRCC Methylation_Array tissue_normal CPT0381210009 205549600088_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 f682def4-7e99-4f0e-94d7-b53b9f0601e2 6a498b89ce4614b66aff13915853f564 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.MethArray.Red.T C3N-01903 CCRCC Methylation_Array tumor CPT0381170009 205589730156_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 0edff60d-4dd7-4f40-bd66-e24bdc66a6b7 9a4d37cb1285f06c6d3a18f0613936db {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.miRNA-Seq.A.hg38 C3N-01903 CCRCC miRNA-Seq tissue_normal CPT0381210006 21a2e731-9df8-49b6-8c5b-f116aea4341e_mirnaseq_gdc_realn.bam 236490280 BAM harmonized CPTAC3 62f9a603-1dc5-4590-9baa-1db7c1752b97 7af95e955f5a056fa824d15714723875 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.miRNA-Seq.S11_L001_R1.A C3N-01903 CCRCC miRNA-Seq tissue_normal CPT0381210006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTTGTA_S11_L001_R1_001.unaln.bam 221528801 BAM S11_L001_R1 submitted_unaligned CPTAC3 19bcb5ac-b8de-48e0-aee0-93aa5eb7d7cb fe6fc1f5fd2cdeb4c3d5fc22189727e8 {"aliquot_tag": "ALQ_cd135e87", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.miRNA-Seq.S13_L001_R1.T C3N-01903 CCRCC miRNA-Seq tumor CPT0381170006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GGCTAC_S13_L001_R1_001.unaln.bam 257535238 BAM S13_L001_R1 submitted_unaligned CPTAC3 71e4f953-7363-4736-94cb-23f698a28960 751090d749aa666314a525c3796f95c2 {"aliquot_tag": "ALQ_c4c7d989", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.miRNA-Seq.T.hg38 C3N-01903 CCRCC miRNA-Seq tumor CPT0381170006 10b87552-ab75-4c0b-979a-92c7b69fdb37_mirnaseq_gdc_realn.bam 278997628 BAM harmonized CPTAC3 c621eceb-6ae1-42db-bbd4-7621b18ed2f6 4ff2b62bb0b4ef5cab95bc7ed47a9dce {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.RNA-Seq.chimeric.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.chimeric.gdc_realn.bam 374996677 BAM chimeric harmonized CPTAC3 2226c13c-7844-41cb-a128-18e3928e69f5 b21fa4664a1f871f3af297b9ec5b0b65 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.RNA-Seq.chimeric.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.chimeric.gdc_realn.bam 531840480 BAM chimeric harmonized CPTAC3 620e23c1-0a69-417e-bfc3-58118ff58f68 fb1718e640087519392277d6af75fc66 {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.RNA-Seq.genomic.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.genomic.gdc_realn.bam 8055113250 BAM genomic harmonized CPTAC3 0dd45bfa-2417-4f4f-8bc7-8f93b9606ecc d786215a9b6050b0c4aa86c1a3836f39 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.RNA-Seq.genomic.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.genomic.gdc_realn.bam 6799806623 BAM genomic harmonized CPTAC3 66d815d6-a4c7-4b7d-91a8-f3b828a91de0 b4862c6d45b147f180facc9570f9abd7 {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.RNA-Seq.S26_L007_R1.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 3691858569 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 8e1d1cdd-0843-4867-8ae0-8248dc85b781 88127249f956bb327887da0c24932e2b {"aliquot_tag": "ALQ_cd135e87", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.RNA-Seq.S26_L007_R2.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4203141537 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 bd3d8b0e-35f5-4457-8999-f11961ff7810 ccc533b9f433230053a8811a33b91dbc {"aliquot_tag": "ALQ_cd135e87", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.RNA-Seq.S28_L007_R1.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R1_001.fastq.gz 3320059496 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 6399214e-9dc2-4f85-89a4-f3f3cae17fd2 155e88232052a0d15a63d28ee1dc9d66 {"aliquot_tag": "ALQ_c4c7d989", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.RNA-Seq.S28_L007_R2.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R2_001.fastq.gz 3762030728 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 00ad6df2-e0f2-45ad-8e68-17e9e2127bcb 04cfc354684c0723f84fade96f2a7b22 {"aliquot_tag": "ALQ_c4c7d989", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.RNA-Seq.transcriptome.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.transcriptome.gdc_realn.bam 8903177987 BAM transcriptome harmonized CPTAC3 9761a8b6-f2e6-46ad-92e7-9d8dc292f0fe e0a195d4638bc0f97ea9dd96ebf18ce8 {"aliquot_tag": "ALQ_cd135e87", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.RNA-Seq.transcriptome.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.transcriptome.gdc_realn.bam 8092691284 BAM transcriptome harmonized CPTAC3 6dd395c8-0a6c-4e93-bdde-c98dfa385daf 60bf00efc8c3a5baae6e4315b2098694 {"aliquot_tag": "ALQ_c4c7d989", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.WGS.N C3N-01903 CCRCC WGS blood_normal CPT0381410002 CPT0381410002.WholeGenome.RP-2158.bam 41368914785 BAM submitted_aligned CPTAC3 e67b77e0-eeca-4622-9b1c-0722d91eb5fc dd9cde9ea707e77374c56c00c74f202f {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01903.WGS.N.hg38 C3N-01903 CCRCC WGS blood_normal CPT0381410002 969cdc8d-c366-4ccf-ae04-d3fd3478beb3_wgs_gdc_realn.bam 127001104942 BAM harmonized CPTAC3 81123d82-e2e4-4d41-a0a4-c3de7a4f4cf5 1b845500898bb64ca9bf77222332ff55 {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01903.WGS.T C3N-01903 CCRCC WGS tumor CPT0381170009 CPT0381170009.WholeGenome.RP-2158.bam 20156307452 BAM submitted_aligned CPTAC3 e54b2d27-18c0-4fe5-9c32-9b8edf64a850 69f89cc5d9091e3c5f087e19aaf5db37 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.WGS.T.hg38 C3N-01903 CCRCC WGS tumor CPT0381170009 adb3928b-eef2-4f73-9ef5-b8ecaa913acb_wgs_gdc_realn.bam 58990861497 BAM harmonized CPTAC3 38c8074d-a7d1-4eef-bf77-63426b2ff364 aa51da264da9045241102d84f7afd83c {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.WXS.A C3N-01903 CCRCC WXS tissue_normal CPT0381210009 CPT0381210009.WholeExome.RP-1303.bam 24800084976 BAM submitted_aligned CPTAC3 549f5a96-9453-42f5-87fe-5837f1926092 5c11a44ec0e177480b75b0ceb1772a70 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01903.WXS.A.hg38 C3N-01903 CCRCC WXS tissue_normal CPT0381210009 175c3ce1-5979-42f1-adbe-6209bc7cbcaa_wxs_gdc_realn.bam 33797352971 BAM harmonized CPTAC3 3cf2a798-41b9-4fad-a28e-8fc3cb56dd81 21c6e75109a46559582250885352a9d6 {"aliquot_tag": "ALQ_5dac4316", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-01903.WXS.N C3N-01903 CCRCC WXS blood_normal CPT0381410002 CPT0381410002.WholeExome.RP-1303.bam 21560201292 BAM submitted_aligned CPTAC3 d137b6a3-e536-44c3-b020-597926143f1c 9b5e4bc21d32c760d53ebb980dfa0369 {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01903.WXS.N.hg38 C3N-01903 CCRCC WXS blood_normal CPT0381410002 969cdc8d-c366-4ccf-ae04-d3fd3478beb3_wxs_gdc_realn.bam 29470877085 BAM harmonized CPTAC3 fa10a0d1-53e5-4d43-b2a7-e575106110e3 925aaac80a5f350eeabae277d5104a11 {"aliquot_tag": "ALQ_1c277983", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01903.WXS.T C3N-01903 CCRCC WXS tumor CPT0381170009 CPT0381170009.WholeExome.RP-1303.bam 24342607086 BAM submitted_aligned CPTAC3 6b93d621-a4ed-4bad-aefb-ce11fd44181d 6ac994435f7c4297b178727005e00414 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01903.WXS.T.hg38 C3N-01903 CCRCC WXS tumor CPT0381170009 adb3928b-eef2-4f73-9ef5-b8ecaa913acb_wxs_gdc_realn.bam 33279770289 BAM harmonized CPTAC3 ac893da6-3290-4668-9fed-db3141341881 6bb6d7e2fa8237d68d84e8240e0bfbd1 {"aliquot_tag": "ALQ_5478c418", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01904.MethArray.Green.T C3N-01904 CCRCC Methylation_Array tumor CPT0381430009 205555390157_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 bd642a10-031a-475c-8144-658b35cf6fdd 5773272557d65f42fe83ae2efd9ad243 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.MethArray.Red.T C3N-01904 CCRCC Methylation_Array tumor CPT0381430009 205555390157_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 72854a5a-984c-4f6e-8e20-e8e1d95da275 9bb44d9a51058f9777311610466cc2f5 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.miRNA-Seq.S2_L001_R1.T C3N-01904 CCRCC miRNA-Seq tumor CPT0381430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_AGTCAA_S2_L001_R1_001.unaln.bam 281270434 BAM S2_L001_R1 submitted_unaligned CPTAC3 10b99b33-fb23-48b2-9464-ef306c280c2d 765150a3e4ba7da98b82d3c680e6ccc2 {"aliquot_tag": "ALQ_618aeefa", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.miRNA-Seq.T.hg38 C3N-01904 CCRCC miRNA-Seq tumor CPT0381430006 8af75e78-343d-423a-9c76-f377aaa71ded_mirnaseq_gdc_realn.bam 301234588 BAM harmonized CPTAC3 a8c7efde-c015-41fa-b810-3f7b3275d2b4 2d6ac46bb8dda0509ac3b430b947fa7f {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.RNA-Seq.chimeric.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.chimeric.gdc_realn.bam 413018840 BAM chimeric harmonized CPTAC3 626f6d7b-c44f-4853-8876-9739ee57a050 64aeb290cc996f048ebfb65c3e688ef1 {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.RNA-Seq.genomic.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.genomic.gdc_realn.bam 9568044480 BAM genomic harmonized CPTAC3 6d456424-93c0-476f-9d1d-0099d7220806 b094b3c5f36cf3f310fc0a04262f2cd3 {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.RNA-Seq.S22_L006_R1.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 4529073333 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 ec9c2f10-abe2-4e34-bf65-76b95f07e67e f4b84cfb872ede34f4387061aa9bbd06 {"aliquot_tag": "ALQ_618aeefa", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.RNA-Seq.S22_L006_R2.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 5082428448 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 694c44c5-29b7-4a2a-8b2b-700c8423889a ca41e1baed9dc91fef25ae7ecb0852b3 {"aliquot_tag": "ALQ_618aeefa", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.RNA-Seq.transcriptome.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.transcriptome.gdc_realn.bam 10419516729 BAM transcriptome harmonized CPTAC3 c8552959-fc50-4eeb-8eb4-e1e2163aab10 aa5821c8cca901359037fc66d60eb578 {"aliquot_tag": "ALQ_618aeefa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.scRNA-Seq.S1_L003_R1.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S1_L003_R1_001.fastq.gz 3393258637 FASTQ S1_L003_R1 submitted_unaligned CPTAC3 db5021be-2fb9-440f-9bcb-96b441560db6 a5daa5f3cc87c4f262b9fdbecd646677 {"aliquot_tag": "ALQ_8f848fd6", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.scRNA-Seq.S1_L003_R2.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S1_L003_R2_001.fastq.gz 11533282720 FASTQ S1_L003_R2 submitted_unaligned CPTAC3 09eec294-123d-47d1-ae82-c74c3ca43090 b87d870bc8ff26929443304885f218cf {"aliquot_tag": "ALQ_8f848fd6", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.scRNA-Seq.S7_L003_R1.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S7_L003_R1_001.fastq.gz 1362438878 FASTQ S7_L003_R1 submitted_unaligned CPTAC3 d5fe73fc-ce4a-488b-89e7-b2ea51dcdae5 53e93c5f17f524f08b21c777f2c7a369 {"aliquot_tag": "ALQ_8f848fd6", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.scRNA-Seq.S7_L003_R2.T C3N-01904 CCRCC scRNA-Seq tumor CPT0381430004 20220127_WUSTL_TWFU-CPT0381430004-Y1N1Z1_1Bn1_1_GCGCTTATGG+GCCTGGCTAG_S7_L003_R2_001.fastq.gz 4656013216 FASTQ S7_L003_R2 submitted_unaligned CPTAC3 1652c2d5-f51a-4417-bf60-baee3f910d80 bf787d1ff735a650adebbe726e1d7244 {"aliquot_tag": "ALQ_8f848fd6", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.WGS.N C3N-01904 CCRCC WGS blood_normal CPT0381540002 CPT0381540002.WholeGenome.RP-2158.bam 23456002017 BAM submitted_aligned CPTAC3 0a3af977-8f35-4aa6-809e-597a8c3ab4d1 b6037a0462907211255b0345fc79b4e6 {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01904.WGS.N.hg38 C3N-01904 CCRCC WGS blood_normal CPT0381540002 fb97d04c-527d-425e-b8ca-4298ee511f02_wgs_gdc_realn.bam 69955597389 BAM harmonized CPTAC3 e5dd6e78-21c1-4dc6-9b4f-fb7375528426 3b44678b00176e6ca31512ed5ac72ad1 {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01904.WGS.T C3N-01904 CCRCC WGS tumor CPT0381430009 CPT0381430009.WholeGenome.RP-2158.bam 22981681101 BAM submitted_aligned CPTAC3 00a4c86d-df64-44ae-8c3f-dad499bb240b a032f4f710a33ecdfaee4de0b7142c62 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.WGS.T.hg38 C3N-01904 CCRCC WGS tumor CPT0381430009 73605cea-79a9-4d31-a331-61e44639f773_wgs_gdc_realn.bam 69297416492 BAM harmonized CPTAC3 46e7e854-ea7d-4a48-9d93-68ff49b13296 2204915a04df6c59126e68f8c9f14ee5 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.WXS.N C3N-01904 CCRCC WXS blood_normal CPT0381540002 CPT0381540002.WholeExome.RP-1303.bam 23426915094 BAM submitted_aligned CPTAC3 53c1e40b-b557-4808-8492-0c7aede22778 65f123aa3c6b7707564c712a4eca874e {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01904.WXS.N.hg38 C3N-01904 CCRCC WXS blood_normal CPT0381540002 fb97d04c-527d-425e-b8ca-4298ee511f02_wxs_gdc_realn.bam 31755321391 BAM harmonized CPTAC3 0ddfcf44-17ca-49c5-a49a-4cf3af83087f 080676a59fe6ecf5dde20715fe6ebd3d {"aliquot_tag": "ALQ_1f9b2556", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-01904.WXS.T C3N-01904 CCRCC WXS tumor CPT0381430009 CPT0381430009.WholeExome.RP-1303.bam 25757830045 BAM submitted_aligned CPTAC3 45a9bf02-81c9-4882-be91-ce8bf367896a 812e08754850746f4a5833c46b73c9cf {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01904.WXS.T.hg38 C3N-01904 CCRCC WXS tumor CPT0381430009 73605cea-79a9-4d31-a331-61e44639f773_wxs_gdc_realn.bam 35146065655 BAM harmonized CPTAC3 273b292c-5b87-4fa7-92a8-e9f0a90c225a f578fe4af86bca3dc70cec1f6a37ce07 {"aliquot_tag": "ALQ_f135f36b", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01905.MethArray.Green.A C3N-01905 CCRCC Methylation_Array tissue_normal CPT0124300006 204930630034_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 60259406-6232-438b-a778-5f9ef96b0400 81b830e2236219b0060201bce9a19031 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.MethArray.Green.T C3N-01905 CCRCC Methylation_Array tumor CPT0124210006 203271750047_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4e26f78b-317f-4daf-96bd-9748066a06e1 d22f4824c9059f670713144ba63a6179 {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.MethArray.Red.A C3N-01905 CCRCC Methylation_Array tissue_normal CPT0124300006 204930630034_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 7c8e0d92-dfc2-470e-a47d-d2b440488daf 8f7d2c4eef1d8b29bba86fd90b785464 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.MethArray.Red.T C3N-01905 CCRCC Methylation_Array tumor CPT0124210006 203271750047_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 0414d268-4eb6-4e64-aa51-d3ebb95cc436 773babb4b9d675443fcbaf148af94748 {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.miRNA-Seq.A.hg38 C3N-01905 CCRCC miRNA-Seq tissue_normal CPT0124300009 efce5f87-ea0b-4f6e-87b2-cece3d3a673c_mirnaseq_gdc_realn.bam 241143242 BAM harmonized CPTAC3 f080ed80-dc32-4ba5-a0ed-49e209c2ab35 6711e8688570927f8cadb92fb306edcf {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.miRNA-Seq.S36_L005_R1.T C3N-01905 CCRCC miRNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0176_AHYGLVBBXX_CCAACA_S36_L005_R1_001.unaln.bam 275782932 BAM S36_L005_R1 submitted_unaligned CPTAC3 c620d356-8972-4ef7-a0e9-8ae44e16d570 4e98340cc18d8000c784e74771e11788 {"aliquot_tag": "ALQ_b0a258ff", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.miRNA-Seq.S7_L002_R1.A C3N-01905 CCRCC miRNA-Seq tissue_normal CPT0124300009 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L002_R1_001.unaln.bam 222342284 BAM S7_L002_R1 submitted_unaligned CPTAC3 4bbaaa7d-b781-4f56-8cc1-b125af7a0ce8 a6df8989423af4a0189772bf81116ef3 {"aliquot_tag": "ALQ_469ea2ea", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.miRNA-Seq.T.hg38 C3N-01905 CCRCC miRNA-Seq tumor CPT0124210009 cb58c2cb-2be1-4986-aab3-7961bbe5ffe3_mirnaseq_gdc_realn.bam 298964683 BAM harmonized CPTAC3 5d1b23b1-df1e-453a-bce1-ec2f207c0d5a 85d99f0983a51610d62f731a07f5341b {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.RNA-Seq.chimeric.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.chimeric.gdc_realn.bam 178628768 BAM chimeric harmonized CPTAC3 6bf3d6a5-436f-4e81-9e72-9a28c829f975 3ab2b0ab181601884fff48aacbe68d74 {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.RNA-Seq.chimeric.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.chimeric.gdc_realn.bam 34118612 BAM chimeric harmonized CPTAC3 98d2d0f9-e551-4328-ba5a-23bc9961998c 9fca3195fbd25c7e2b6d259ede9ddac1 {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.RNA-Seq.genomic.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.genomic.gdc_realn.bam 10130276417 BAM genomic harmonized CPTAC3 7a0ebbaf-1fac-4333-9d95-7b4b1c80f407 31f3158dcf8132de63d840911b9d6561 {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.RNA-Seq.genomic.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.genomic.gdc_realn.bam 7992852184 BAM genomic harmonized CPTAC3 7f624411-67a9-4105-861c-d5f159869d44 dfaf9b08519f9f95e8aef4481ab46ff4 {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.RNA-Seq.S16_L004_R1.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R1_001.fastq.gz 3883414587 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 634ad8f8-227e-4742-a2ea-a224081e3544 9285b30fe54c2e2eac7e237ccc79e659 {"aliquot_tag": "ALQ_b0a258ff", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.RNA-Seq.S16_L004_R2.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R2_001.fastq.gz 4017058100 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 c2f011af-3c00-4720-931f-9a97b46e081a ba6ca9340b12ebb9243ac23df809413d {"aliquot_tag": "ALQ_b0a258ff", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.RNA-Seq.S6_L004_R1.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R1_001.fastq.gz 4569038241 FASTQ S6_L004_R1 submitted_unaligned CPTAC3 ec354fef-7a90-4200-b919-f019b764e28f b0ec57fd2acbbeda53b0ad075e25f0e2 {"aliquot_tag": "ALQ_469ea2ea", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.RNA-Seq.S6_L004_R2.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R2_001.fastq.gz 5056705329 FASTQ S6_L004_R2 submitted_unaligned CPTAC3 857de801-17c6-4e83-9b3a-6bc0ca7884a1 ed8528bde2bb3bc77dac3d4cc2c60069 {"aliquot_tag": "ALQ_469ea2ea", "sample": "S6", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.RNA-Seq.transcriptome.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.transcriptome.gdc_realn.bam 11962641741 BAM transcriptome harmonized CPTAC3 35450836-7e54-496d-93d3-24f9650b0ff8 26c8907ed2e2ca36d2984b771715f6bc {"aliquot_tag": "ALQ_469ea2ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.RNA-Seq.transcriptome.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.transcriptome.gdc_realn.bam 10549697664 BAM transcriptome harmonized CPTAC3 9961f176-3d48-469e-b753-40cbf0027a04 69e7806739be50aa6bf0c90fa7757184 {"aliquot_tag": "ALQ_b0a258ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.WGS.A C3N-01905 CCRCC WGS tissue_normal CPT0124300006 CPT0124300006.WholeGenome.RP-1303.bam 61953026588 BAM submitted_aligned CPTAC3 ae08017b-4c49-4f5b-bfe8-9e5799d7630c ce6f9a87b5a1beb990018c62874f58fe {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.WGS.A.hg38 C3N-01905 CCRCC WGS tissue_normal CPT0124300006 9d985435-8848-4d92-b51c-14a5f155d6bb_wgs_gdc_realn.bam 90060154555 BAM harmonized CPTAC3 1ded8b8e-9f60-4cbd-8d4e-de984ef6f50b 02258fadc84c575f7de4761a2337299c {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.WGS.N C3N-01905 CCRCC WGS blood_normal CPT0124340002 CPT0124340002.WholeGenome.RP-1303.bam 62502300635 BAM submitted_aligned CPTAC3 c6f5ef00-c23c-41c4-9b62-c0826cac8262 ab32fcb30873daf61238a8778acbc4f9 {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01905.WGS.N.hg38 C3N-01905 CCRCC WGS blood_normal CPT0124340002 71e0d820-65e4-41a7-806b-c4257071fc0f_wgs_gdc_realn.bam 89352023487 BAM harmonized CPTAC3 995d6368-2fe8-4a53-9557-a84cbea5a930 d2b7f1cbd94676910dd0f85a10a5559a {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01905.WGS.T C3N-01905 CCRCC WGS tumor CPT0124210006 CPT0124210006.WholeGenome.RP-1303.bam 61116274613 BAM submitted_aligned CPTAC3 b48c4d43-5c4b-4a08-aebe-c04ee7b4cb09 afdef70e90b8b5123e0c819b100d986c {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.WGS.T.hg38 C3N-01905 CCRCC WGS tumor CPT0124210006 9fe1da04-04cb-456d-92d2-2e589c170a1c_wgs_gdc_realn.bam 90353506941 BAM harmonized CPTAC3 8252d9e4-ed85-4cfe-bd53-a25813420b05 01220d85afd7de3352d59f5950fd3ebe {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.WXS.A C3N-01905 CCRCC WXS tissue_normal CPT0124300006 CPT0124300006.WholeExome.RP-1303.bam 20457791183 BAM submitted_aligned CPTAC3 52950ae3-afcd-4928-831c-83c7d6b4bbf1 d238ff8d1866b6d25a887dc89d684684 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.WXS.A.hg38 C3N-01905 CCRCC WXS tissue_normal CPT0124300006 9d985435-8848-4d92-b51c-14a5f155d6bb_wxs_gdc_realn.bam 28465640044 BAM harmonized CPTAC3 22f87dc6-e139-4a13-afeb-952b8eb79965 efbebfe8a6c8b4c49c643196f0e37f36 {"aliquot_tag": "ALQ_d621bf7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01905.WXS.N C3N-01905 CCRCC WXS blood_normal CPT0124340002 CPT0124340002.WholeExome.RP-1303.bam 24272635809 BAM submitted_aligned CPTAC3 4f9b54e8-49c8-4186-a1e6-441b98a62497 6552826ebf5a783471b1fcbe13af9e71 {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01905.WXS.N.hg38 C3N-01905 CCRCC WXS blood_normal CPT0124340002 71e0d820-65e4-41a7-806b-c4257071fc0f_wxs_gdc_realn.bam 33177750872 BAM harmonized CPTAC3 f904b85a-0e75-413e-9d0e-2be5bedbe69b 69aee64ac699642face20df701b837a2 {"aliquot_tag": "ALQ_24ccdda2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01905.WXS.T C3N-01905 CCRCC WXS tumor CPT0124210006 CPT0124210006.WholeExome.RP-1303.bam 30061072111 BAM submitted_aligned CPTAC3 ced6c7cb-edf6-40b5-b562-4a400e8368d6 e74f66dbab8373ff4882c9539382d91d {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01905.WXS.T.hg38 C3N-01905 CCRCC WXS tumor CPT0124210006 9fe1da04-04cb-456d-92d2-2e589c170a1c_wxs_gdc_realn.bam 42225849168 BAM harmonized CPTAC3 25c21d4b-9028-42ce-934d-87327a43050c 688c4bbd35ec182ee5b79f3cf1d53afa {"aliquot_tag": "ALQ_201d456e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01907.MethArray.Green.T C3N-01907 PDA Methylation_Array tumor CPT0162830008 203561620072_R01C01_Grn.idat 13676218 IDAT Green NA CPTAC3 f021f35d-fe28-4de8-a558-e59f2d0acaba ed576c6d4577f8b4fd4ec27408a1a9d0 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.MethArray.Red.T C3N-01907 PDA Methylation_Array tumor CPT0162830008 203561620072_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 82b508fd-6928-4aed-b5b0-f86e56eac933 745e5fdc021f49557f7a57ecd8259259 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.miRNA-Seq.S12_L006_R1.T C3N-01907 PDA miRNA-Seq tumor CPT0162830011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCAACA_S12_L006_R1_001.unaln.bam 237720203 BAM S12_L006_R1 submitted_unaligned CPTAC3 b0011162-0894-45c9-9a53-33f6f557b00f f8934d795daf203471952e8aeda9f0e5 {"aliquot_tag": "ALQ_9ba3aa4a", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.miRNA-Seq.T.hg38 C3N-01907 PDA miRNA-Seq tumor CPT0162830011 5c0aa812-0a55-4ed4-8876-bb589be31409_mirnaseq_gdc_realn.bam 264132706 BAM harmonized CPTAC3 c050c3a8-20a5-4e1f-a8eb-ce3a41d7ecc4 eff96c8cea378316024a7f6260463d20 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.RNA-Seq.chimeric.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.chimeric.gdc_realn.bam 46219557 BAM chimeric harmonized CPTAC3 83c8f122-1672-49ab-b3f8-8e2060e66909 91c0469bbae6cf7f05bc02675535b7f0 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.RNA-Seq.genomic.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.genomic.gdc_realn.bam 11609413373 BAM genomic harmonized CPTAC3 8df0b51a-f751-4b31-869f-960e1340547f 808ae7dc79f9846c9823106b8f80dd85 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.RNA-Seq.S15_L004_R1.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 4432083755 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 65b64b6c-529a-4724-b8ce-38a225cb572c 9f8dc7cfc61a1035f8735401f665f009 {"aliquot_tag": "ALQ_9ba3aa4a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.RNA-Seq.S15_L004_R2.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 4919976698 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 bad5f741-5f43-4cce-b96d-0a559c9336be 01295e51fc7a152390f0682b01b08eeb {"aliquot_tag": "ALQ_9ba3aa4a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.RNA-Seq.transcriptome.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.transcriptome.gdc_realn.bam 10789634457 BAM transcriptome harmonized CPTAC3 de40caf9-5efc-4b88-bab4-d085fafdbe7b 69cf6dfe7e393cbe29c8683c56a4d815 {"aliquot_tag": "ALQ_9ba3aa4a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.WGS.N C3N-01907 PDA WGS blood_normal CPT0162870002 CPT0162870002.WholeGenome.RP-1303.bam 76936729921 BAM submitted_aligned CPTAC3 a3a1f50c-c025-4ba7-b477-28eec659a2fa eb54adf058f733bffc8f745b367532e9 {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01907.WGS.N.hg38 C3N-01907 PDA WGS blood_normal CPT0162870002 ee39c35d-388f-4d49-b2f3-81d7f51f7867_wgs_gdc_realn.bam 112116424585 BAM harmonized CPTAC3 ebb59086-9585-461d-8698-17fb6c695d02 aadb030c4a65d90e78ca3f99a56a44e1 {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01907.WGS.T C3N-01907 PDA WGS tumor CPT0162830008 CPT0162830008.WholeGenome.RP-1303.bam 144970727417 BAM submitted_aligned CPTAC3 c23fb285-6016-4c82-83b1-ad96009162a4 27c8276f25362ca9fc6fc3488f961786 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.WGS.T.hg38 C3N-01907 PDA WGS tumor CPT0162830008 1c3202ce-2f6e-4a96-8c5c-dac2732472a7_wgs_gdc_realn.bam 211474710097 BAM harmonized CPTAC3 11a3c7ff-c3fb-4ba4-9e93-81345f39d8ce c0956ff026cd50b09da5dff1bd6c53ce {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.WXS.N C3N-01907 PDA WXS blood_normal CPT0162870002 CPT0162870002.WholeExome.RP-1303.bam 23840175418 BAM submitted_aligned CPTAC3 865fc727-6eb0-4c37-91cc-c660f3b7746d f484674191238c7660e732d19887bb30 {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01907.WXS.N.hg38 C3N-01907 PDA WXS blood_normal CPT0162870002 ee39c35d-388f-4d49-b2f3-81d7f51f7867_wxs_gdc_realn.bam 32850943418 BAM harmonized CPTAC3 ec8e41fd-887c-4687-b2f0-ab147d72cb28 88e119154ccf595fbb8591814765915a {"aliquot_tag": "ALQ_ee316c71", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01907.WXS.T C3N-01907 PDA WXS tumor CPT0162830008 CPT0162830008.WholeExome.RP-1303.bam 50290828309 BAM submitted_aligned CPTAC3 af193ec0-21f3-413e-8066-7d0069a7d939 c69f020357b70425e75d456e97aa84cc {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01907.WXS.T.hg38 C3N-01907 PDA WXS tumor CPT0162830008 1c3202ce-2f6e-4a96-8c5c-dac2732472a7_wxs_gdc_realn.bam 70564791590 BAM harmonized CPTAC3 f87c0006-6f17-4264-94de-1bfe5463622f 4025b32fb9d3910b5498721d25cde303 {"aliquot_tag": "ALQ_fb6423af", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01943.MethArray.Green.A C3N-01943 HNSCC Methylation_Array tissue_normal CPT0163430006 203273200080_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 d85eb652-26a9-4d06-aaba-3d374ae0d577 4c4882ef336c7b5b8a6806373c1cf6bb {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.MethArray.Green.T C3N-01943 HNSCC Methylation_Array tumor CPT0163410006 203271750047_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 95064813-5fc0-4ee2-b10b-7914402e9be2 6ae30f785b58cdf3218c07968caf8dd1 {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.MethArray.Red.A C3N-01943 HNSCC Methylation_Array tissue_normal CPT0163430006 203273200080_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 ca66d930-5ade-49af-9b59-9eae10a8b2cc 420b45272bb42ad35d047aa2abe062f9 {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.MethArray.Red.T C3N-01943 HNSCC Methylation_Array tumor CPT0163410006 203271750047_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 beb9c7cc-d66d-489c-9f1c-6ceaf5758b67 c171721e014d3eaf069d485cc24dd7da {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.miRNA-Seq.A.hg38 C3N-01943 HNSCC miRNA-Seq tissue_normal CPT0163430009 cde2aeb5-cfdf-4878-a122-c2c0a8f097db_mirnaseq_gdc_realn.bam 293139160 BAM harmonized CPTAC3 2dc32065-d92b-4ad8-8c8b-e72d2d61e456 2d33294d34b35aabd73d7c41877b8ebb {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.miRNA-Seq.S14_L001_R1.A C3N-01943 HNSCC miRNA-Seq tissue_normal CPT0163430009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L001_R1_001.unaln.bam 263831301 BAM S14_L001_R1 submitted_unaligned CPTAC3 f7bd89bc-fbd4-4aea-b0ba-7ac5cbdc3ea6 4abc8da414958726181fb0ef46715744 {"aliquot_tag": "ALQ_5dd6d8f6", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.miRNA-Seq.S27_L002_R1.T C3N-01943 HNSCC miRNA-Seq tumor CPT0163410009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATTCCT_S27_L002_R1_001.unaln.bam 257979026 BAM S27_L002_R1 submitted_unaligned CPTAC3 2b33d247-9b88-48c8-86ad-8a66b4a12e57 3d021d71e87059bbacf3af2e9ab5b1ee {"aliquot_tag": "ALQ_27168b96", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.miRNA-Seq.T.hg38 C3N-01943 HNSCC miRNA-Seq tumor CPT0163410009 f5ed841b-ab8b-41ff-8d5d-b10aff881cc7_mirnaseq_gdc_realn.bam 291817805 BAM harmonized CPTAC3 66fabb4c-94dc-4a75-8941-fef39a2fd45f 8eb52bbcd672045297acd95ba8bcd7d8 {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.RNA-Seq.chimeric.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.chimeric.gdc_realn.bam 229627330 BAM chimeric harmonized CPTAC3 b1cb58cb-eafc-4cba-844c-f562d897906a 9f1971d3a2d10083e9f878e70ed194b2 {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.RNA-Seq.chimeric.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.chimeric.gdc_realn.bam 272800435 BAM chimeric harmonized CPTAC3 b817f9e0-b7bb-4951-ba15-646443695f7a 31aabb91c4fa1ed52a15b78702e0ab2e {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.RNA-Seq.genomic.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.genomic.gdc_realn.bam 7722806430 BAM genomic harmonized CPTAC3 b819e475-f772-4e3e-b948-ce0b30e5c340 057f8e139613d92cf8614eebd7dad4c3 {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.RNA-Seq.genomic.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.genomic.gdc_realn.bam 7988084503 BAM genomic harmonized CPTAC3 78806e14-55ba-46a8-8556-e976d5163449 c7427778311b50cb94964d8754ab1095 {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.RNA-Seq.S19_L005_R1.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R1_001.fastq.gz 3793274236 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 45275e46-5062-4d69-a686-d04d5547f604 087473ff7f7f83e2e77cdc26b11f3cf9 {"aliquot_tag": "ALQ_5dd6d8f6", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.RNA-Seq.S19_L005_R2.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R2_001.fastq.gz 4030990961 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 5b426b25-d2f5-444d-9764-578b39d0aece 2c910822361221ab429b436640148e12 {"aliquot_tag": "ALQ_5dd6d8f6", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.RNA-Seq.S1_L007_R1.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3902422854 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 68c5614d-cbd8-420d-bd6e-f9d959a20e70 ce121d28f0d4f36d165de3c6c288e2c9 {"aliquot_tag": "ALQ_27168b96", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.RNA-Seq.S1_L007_R2.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 4193569724 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 bdbdc07c-3db0-4346-b066-71179f83f3f5 771af00fb1e875f8fd0e7ddec0af915b {"aliquot_tag": "ALQ_27168b96", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.RNA-Seq.transcriptome.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.transcriptome.gdc_realn.bam 10212502479 BAM transcriptome harmonized CPTAC3 4616062d-2a82-466f-a138-a970730dff0c 0aba2403c7ccdef6c71394216aedede6 {"aliquot_tag": "ALQ_5dd6d8f6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.RNA-Seq.transcriptome.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.transcriptome.gdc_realn.bam 10783688599 BAM transcriptome harmonized CPTAC3 d611ca43-e6a5-421c-8669-5fb01a606cc8 e3798d1d4295f3a9ea4a19bdaf582f83 {"aliquot_tag": "ALQ_27168b96", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.WGS.N C3N-01943 HNSCC WGS blood_normal CPT0163470002 CPT0163470002.WholeGenome.RP-1303.bam 63720322260 BAM submitted_aligned CPTAC3 12329dd1-e025-4e5a-8adc-d9913290a3a7 2224d013cd0663f1c08df8737cb50efc {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01943.WGS.N.hg38 C3N-01943 HNSCC WGS blood_normal CPT0163470002 42e06b2a-87a0-4677-81df-704db9d4d965_wgs_gdc_realn.bam 93017158901 BAM harmonized CPTAC3 008bdc6f-cd5b-42cd-899c-9a9e72b5c837 485cd139ce9204cee2fbdbd6077f802d {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01943.WGS.T C3N-01943 HNSCC WGS tumor CPT0163410006 CPT0163410006.WholeGenome.RP-1303.bam 97690023099 BAM submitted_aligned CPTAC3 b8d3cb90-dd4c-45e7-ad70-c67bb79908be 2f048c2c7f8f55d955ce22602a281dfc {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.WGS.T.hg38 C3N-01943 HNSCC WGS tumor CPT0163410006 89893dd8-439e-4c58-8d96-13c4baea42e6_wgs_gdc_realn.bam 141752436450 BAM harmonized CPTAC3 f310ac63-f811-451c-bb2f-5c6ff9112304 0ecfc29b00d3603b2143825ab04aa9c8 {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.WXS.A C3N-01943 HNSCC WXS tissue_normal CPT0163430006 CPT0163430006.WholeExome.RP-1303.bam 19053026786 BAM submitted_aligned CPTAC3 b146d5f2-8f66-4107-bf66-94e9ca28d099 0e823edbef31f7e7fc2207e2a3ade609 {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.WXS.A.hg38 C3N-01943 HNSCC WXS tissue_normal CPT0163430006 add62bca-750e-42fe-8c4a-9ae4c6849f08_wxs_gdc_realn.bam 26349234662 BAM harmonized CPTAC3 238a9f6d-2823-4230-85ef-80e49f89477c 30e7933ee79b636c414fadf31b17a951 {"aliquot_tag": "ALQ_cd69c567", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01943.WXS.N C3N-01943 HNSCC WXS blood_normal CPT0163470002 CPT0163470002.WholeExome.RP-1303.bam 20733743211 BAM submitted_aligned CPTAC3 f0de96a4-01a3-4a12-9871-1eca473d5055 8f64e557d498d3ed6718a5061efe277d {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01943.WXS.N.hg38 C3N-01943 HNSCC WXS blood_normal CPT0163470002 42e06b2a-87a0-4677-81df-704db9d4d965_wxs_gdc_realn.bam 28956852160 BAM harmonized CPTAC3 3f0d244a-1c14-4af7-8135-a3371f498c99 b1f648e6f1b81ffb49852a0504765e96 {"aliquot_tag": "ALQ_3f84a7be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01943.WXS.T C3N-01943 HNSCC WXS tumor CPT0163410006 CPT0163410006.WholeExome.RP-1303.bam 27374236973 BAM submitted_aligned CPTAC3 e1835eac-ba02-407c-b5b9-14c4271137a5 820477d5997eb12fca6216e0bca5d2f3 {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01943.WXS.T.hg38 C3N-01943 HNSCC WXS tumor CPT0163410006 89893dd8-439e-4c58-8d96-13c4baea42e6_wxs_gdc_realn.bam 37837026335 BAM harmonized CPTAC3 ab224c99-edee-4bd1-8861-d9ea89c12c2a 97aaab23e2f37ebb1a3622576928786a {"aliquot_tag": "ALQ_b7a99607", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.MethArray.Green.A C3N-01944 HNSCC Methylation_Array tissue_normal CPT0163490006 203273200155_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c221ac69-e794-4f9b-8316-9130fd5d6172 a3bc50afd36485cdcdbdeb76fcc43b06 {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.MethArray.Green.T C3N-01944 HNSCC Methylation_Array tumor CPT0163480006 203220070154_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a0465e13-a39c-4eaf-bdf7-c7b357460667 c4dbaf6c5ea73b11a54adeac371e775a {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.MethArray.Red.A C3N-01944 HNSCC Methylation_Array tissue_normal CPT0163490006 203273200155_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 c6674454-2fc8-4b7a-a609-4dd58a589fbd df88ec35836455e7a414e88413f61feb {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.MethArray.Red.T C3N-01944 HNSCC Methylation_Array tumor CPT0163480006 203220070154_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 df36b5be-ce92-47d3-b314-35a35d5a5540 48a60b61634a967ed48d62261f4e7242 {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.miRNA-Seq.A.hg38 C3N-01944 HNSCC miRNA-Seq tissue_normal CPT0163490009 f1210ac3-cd29-4fc9-8575-4a78b78bab28_mirnaseq_gdc_realn.bam 208345231 BAM harmonized CPTAC3 49d96948-5694-4287-b779-1486cecaa4fe 25386bc6a6874cd214451596e2ecea9e {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.miRNA-Seq.S1_L001_R1.A C3N-01944 HNSCC miRNA-Seq tissue_normal CPT0163490009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATCACG_S1_L001_R1_001.unaln.bam 182607069 BAM S1_L001_R1 submitted_unaligned CPTAC3 aff4a266-cf18-4201-aa52-dd7097003f69 3084819f30681f0f0fa28e7919a2a37a {"aliquot_tag": "ALQ_1766c057", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.miRNA-Seq.S28_L002_R1.T C3N-01944 HNSCC miRNA-Seq tumor CPT0163480009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L002_R1_001.unaln.bam 260708202 BAM S28_L002_R1 submitted_unaligned CPTAC3 347ddf28-47f9-4250-b744-25b785d1ffb5 d4284517e369ea9e10ce24bb09b47ac4 {"aliquot_tag": "ALQ_2a06e9e7", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.miRNA-Seq.T.hg38 C3N-01944 HNSCC miRNA-Seq tumor CPT0163480009 879d37d7-0b83-40b4-b823-0da7301956d3_mirnaseq_gdc_realn.bam 288365370 BAM harmonized CPTAC3 759487c9-5f19-4d7f-acfb-40b5a49416ad 5d8a83b37852b5b5e46e0f3a6b5982a8 {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.chimeric.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.chimeric.gdc_realn.bam 315890640 BAM chimeric harmonized CPTAC3 7b3ad84e-10be-4b72-8e0b-17fcaad2ba5d 2dd9dbca69f6c2c110669adf90984dd3 {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.RNA-Seq.chimeric.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.chimeric.gdc_realn.bam 243130979 BAM chimeric harmonized CPTAC3 6bcd98ba-6abc-4625-92d7-8b015c96dbdf a349c46ec1ee62785c3adada350ee687 {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.chimeric.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.chimeric.gdc_realn.bam 304343179 BAM chimeric harmonized CPTAC3 86d41375-9143-4cd4-80e9-eeecdc179428 6a6ec353fe2fed89d4230423bba70ac9 {"aliquot_tag": "ALQ_985c98ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.genomic.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.genomic.gdc_realn.bam 10066741228 BAM genomic harmonized CPTAC3 5253c934-f70f-4294-9f95-8b9b34b4e6cb 475d07a98543a4c71b0457af7a8b16c9 {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.RNA-Seq.genomic.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.genomic.gdc_realn.bam 8425441738 BAM genomic harmonized CPTAC3 fc5fb0ff-5714-4c2a-bde2-b4ef49a92da3 ddef0b4cdf2a03840fe6ec45d8164d2a {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.genomic.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.genomic.gdc_realn.bam 14498171190 BAM genomic harmonized CPTAC3 5cc2500a-6943-4788-85c2-f2b93c6ae64e 98a61abb80e803710967079d4dd25214 {"aliquot_tag": "ALQ_985c98ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.S13_R1.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R1_001.fastq.gz 9435825392 FASTQ S13_R1 submitted_unaligned CPTAC3 0a8ade79-263c-401b-b1ad-818f16174c33 a885d4892177bcbb0de34ae6d2ba7d4d {"aliquot_tag": "ALQ_985c98ea", "sample": "S13", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.S13_R2.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R2_001.fastq.gz 9734138521 FASTQ S13_R2 submitted_unaligned CPTAC3 4ef61294-47e2-4b19-98d0-b0446e38bc17 2529defc43f78d84c6b2eeaee739f86a {"aliquot_tag": "ALQ_985c98ea", "sample": "S13", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.S3_L001_R1.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R1_001.fastq.gz 4852855256 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 f660d943-e7c6-4666-96f6-ec0ff54b1a9b 050d6dc5bd7041e9f182b731c4299d61 {"aliquot_tag": "ALQ_1766c057", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.RNA-Seq.S3_L001_R2.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R2_001.fastq.gz 4679196011 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 2e940f03-221f-44bc-a712-f5f4c622d928 c06277115f77c9d32efe22343ca34f49 {"aliquot_tag": "ALQ_1766c057", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.RNA-Seq.S4_L007_R1.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3981198765 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 8b942ced-227d-40f5-93ba-1b1cb81c9497 ed250e7329b4abed7a70bd4f448388b2 {"aliquot_tag": "ALQ_2a06e9e7", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.S4_L007_R2.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R2_001.fastq.gz 4133665413 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 67e463f4-543c-462a-84ed-3b8e12491b11 93ba9399da90084521df346ab4603ec5 {"aliquot_tag": "ALQ_2a06e9e7", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.transcriptome.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.transcriptome.gdc_realn.bam 12049916146 BAM transcriptome harmonized CPTAC3 2b65e074-f563-42ad-9cf5-1b6a8b431e29 aab6d9d1a107d800e8ba8e249ee804f3 {"aliquot_tag": "ALQ_1766c057", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.RNA-Seq.transcriptome.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.transcriptome.gdc_realn.bam 11134775716 BAM transcriptome harmonized CPTAC3 540d8dfe-149d-46cf-93ef-f27686027da6 e6e736ca4c4640ae4a9231487e692ff0 {"aliquot_tag": "ALQ_2a06e9e7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.RNA-Seq.transcriptome.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.transcriptome.gdc_realn.bam 9163979622 BAM transcriptome harmonized CPTAC3 0fc58d89-7d99-4eac-90c2-d450d623ff66 b3c6b1f883044d0e9ed4ef1bd454b804 {"aliquot_tag": "ALQ_985c98ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.WGS.N C3N-01944 HNSCC WGS blood_normal CPT0163520002 CPT0163520002.WholeGenome.RP-1303.bam 80826084042 BAM submitted_aligned CPTAC3 3d06f871-92ea-47d8-b715-a192e777e003 35ce4795ba0c184e93ba0e4a9a63e1d7 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01944.WGS.N.hg38 C3N-01944 HNSCC WGS blood_normal CPT0163520002 bf73b92d-dc07-472d-8e9a-199f94d96ebd_wgs_gdc_realn.bam 121021014190 BAM harmonized CPTAC3 57855f1a-f4e4-4a7c-a22d-a74033ebbc12 0e2c8d5c7eeb401d909edf6612da8131 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01944.WGS.T C3N-01944 HNSCC WGS tumor CPT0163480006 CPT0163480006.WholeGenome.RP-1303.bam 67603844591 BAM submitted_aligned CPTAC3 b6f2d9d9-655c-4d31-ac82-d2a38af20829 4d36d4034fa492c1b8fbfa232590523c {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.WGS.T.hg38 C3N-01944 HNSCC WGS tumor CPT0163480006 61be022c-97c6-4c1a-a9dd-998b5612ceee_wgs_gdc_realn.bam 100829263136 BAM harmonized CPTAC3 b2f8e522-34b6-4a9c-a669-a4e694020abd eb3ac9f831bf23c14e50ff1c6b950eaf {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.WXS.A C3N-01944 HNSCC WXS tissue_normal CPT0163490006 CPT0163490006.WholeExome.RP-1303.bam 24948487101 BAM submitted_aligned CPTAC3 0e85e4a6-1f3e-47c1-8877-57e99750e29f 0f0ea692d101ced2828e355cfe030eb6 {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.WXS.A.hg38 C3N-01944 HNSCC WXS tissue_normal CPT0163490006 b888f2c8-4a4d-403a-be21-3d85260a9870_wxs_gdc_realn.bam 34578210865 BAM harmonized CPTAC3 69d6fdc0-a661-4fc4-b344-449d76dfed89 42f872dc0f2e1f94c9034496b324c20b {"aliquot_tag": "ALQ_87d9ddc6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01944.WXS.N C3N-01944 HNSCC WXS blood_normal CPT0163520002 CPT0163520002.WholeExome.RP-1303.bam 22996005347 BAM submitted_aligned CPTAC3 4be2d1d5-9dda-4bb3-9fa8-4195098be1ab c3e2908a2761d633779e3a5da22e88d5 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01944.WXS.N.hg38 C3N-01944 HNSCC WXS blood_normal CPT0163520002 bf73b92d-dc07-472d-8e9a-199f94d96ebd_wxs_gdc_realn.bam 31677582751 BAM harmonized CPTAC3 76312e51-1647-4ee7-8a5d-11064ab11956 d46f26ded059ac42b4d25e3b5ec5b1c8 {"aliquot_tag": "ALQ_3c38fb6b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01944.WXS.T C3N-01944 HNSCC WXS tumor CPT0163480006 CPT0163480006.WholeExome.RP-1303.bam 26186219778 BAM submitted_aligned CPTAC3 f0c23857-ee0e-4ead-a89e-b9ede653f4e2 dbebe133f4cd623050cb11b82c81df9b {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01944.WXS.T.hg38 C3N-01944 HNSCC WXS tumor CPT0163480006 61be022c-97c6-4c1a-a9dd-998b5612ceee_wxs_gdc_realn.bam 35574372121 BAM harmonized CPTAC3 57cb4016-b15d-4c69-b337-0bd82c51fab5 0cc491a9a973101ea05d8a0f9e2c9ed4 {"aliquot_tag": "ALQ_bab9f476", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.MethArray.Green.T C3N-01945 HNSCC Methylation_Array tumor CPT0163530006 203220070102_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 11a05d0f-5cfb-4372-8f45-9238dcebd95e cc3d80887ec84d85eefae44fdd6d7c62 {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.MethArray.Red.T C3N-01945 HNSCC Methylation_Array tumor CPT0163530006 203220070102_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 d6207231-a0c3-464d-b40f-e3edbc0b2ec9 c28cb7e56786b0c44e25dc1eda93d22d {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.miRNA-Seq.S29_L002_R1.T C3N-01945 HNSCC miRNA-Seq tumor CPT0163530009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L002_R1_001.unaln.bam 232473800 BAM S29_L002_R1 submitted_unaligned CPTAC3 76260373-fbdc-4c92-936a-2677883786f0 0cdaf5055ce2f107220f31e1aec1ce75 {"aliquot_tag": "ALQ_968a0b53", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.miRNA-Seq.T.hg38 C3N-01945 HNSCC miRNA-Seq tumor CPT0163530009 609d920c-5469-4264-a1a2-76fd0bcd69d5_mirnaseq_gdc_realn.bam 258862170 BAM harmonized CPTAC3 dbd43cd3-aace-4ea5-917d-eeb51ccab2e1 3f14d578e4b98b40849a449d13e5ea0d {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.RNA-Seq.chimeric.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.chimeric.gdc_realn.bam 213255068 BAM chimeric harmonized CPTAC3 0a56ef37-8e8d-4004-9f13-3e1552718932 d0677ac87a1b2fb024b10ba4e3590c6f {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.RNA-Seq.genomic.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.genomic.gdc_realn.bam 7952140532 BAM genomic harmonized CPTAC3 e6428da2-977a-44dd-82e3-f410d50bad20 53698d79b3365e3207f9c94f2d21bc04 {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.RNA-Seq.S5_L008_R1.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3531878135 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 fb578361-069b-4669-b06d-d5a645375596 46f596f38de750feb395d76ebc568672 {"aliquot_tag": "ALQ_968a0b53", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.RNA-Seq.S5_L008_R2.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3892965269 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 8d79172c-3f63-4c2e-847e-5da91b1b22b3 959aa20d1e43c753d37d95287600923f {"aliquot_tag": "ALQ_968a0b53", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.RNA-Seq.transcriptome.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.transcriptome.gdc_realn.bam 9626989171 BAM transcriptome harmonized CPTAC3 be232ceb-74ad-4fb5-8209-a360f3ee2ef0 4d7338bf841012a0de22040b0b3c3328 {"aliquot_tag": "ALQ_968a0b53", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.WGS.N C3N-01945 HNSCC WGS blood_normal CPT0163590002 CPT0163590002.WholeGenome.RP-1303.bam 62241006496 BAM submitted_aligned CPTAC3 9ca771bc-65e9-4050-b766-0e89878c97b1 6a8bd12ec3a746da7363c1842313ff04 {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01945.WGS.N.hg38 C3N-01945 HNSCC WGS blood_normal CPT0163590002 b5b1502d-305a-443a-ad82-76c9d2ea459b_wgs_gdc_realn.bam 91102003657 BAM harmonized CPTAC3 91fd0430-e5b7-4e81-b770-4772b9009448 10caba31cad3cd4879fca08c37edd52f {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01945.WGS.T C3N-01945 HNSCC WGS tumor CPT0163530006 CPT0163530006.WholeGenome.RP-1303.bam 69531665043 BAM submitted_aligned CPTAC3 d9c5e2c9-17c2-4afb-9b3e-00005495f0c0 d3ad9207f40e72a27522204867009c5d {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.WGS.T.hg38 C3N-01945 HNSCC WGS tumor CPT0163530006 060eb50a-3094-46f9-9bd7-d314b69dcaef_wgs_gdc_realn.bam 103425570126 BAM harmonized CPTAC3 40ecf316-4e7b-417b-8f68-03eefa00bf9f ca26fd4ba5de399c19b1357b10f5a7eb {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.WXS.N C3N-01945 HNSCC WXS blood_normal CPT0163590002 CPT0163590002.WholeExome.RP-1303.bam 20711988706 BAM submitted_aligned CPTAC3 8c855828-d29d-4a86-be55-0178a999a27f e7a17282ae39fc39439a41ef50cfe7a6 {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01945.WXS.N.hg38 C3N-01945 HNSCC WXS blood_normal CPT0163590002 b5b1502d-305a-443a-ad82-76c9d2ea459b_wxs_gdc_realn.bam 28160281334 BAM harmonized CPTAC3 2fe8a099-e51f-4b2a-9422-a9aa7744bdd2 979c581bd47bb498d0fd910a2946d306 {"aliquot_tag": "ALQ_4be8ca7a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01945.WXS.T C3N-01945 HNSCC WXS tumor CPT0163530006 CPT0163530006.WholeExome.RP-1303.bam 30676270597 BAM submitted_aligned CPTAC3 e76d4700-b3e1-40f1-92b2-ceb2342736e6 1b1095a08cd261629ffa0040a586e397 {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01945.WXS.T.hg38 C3N-01945 HNSCC WXS tumor CPT0163530006 060eb50a-3094-46f9-9bd7-d314b69dcaef_wxs_gdc_realn.bam 42208604680 BAM harmonized CPTAC3 7a0fa70f-bb3b-4a4f-a9ba-01d71f712de0 6f088398fb328c6620e8422adeea0cd0 {"aliquot_tag": "ALQ_63516c2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.MethArray.Green.T C3N-01946 HNSCC Methylation_Array tumor CPT0163600006 203271750010_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 90ada2a7-7bff-4877-8b10-7af2da6645e1 226b7f5f32e81334573e3ac5200ce6e4 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.MethArray.Red.T C3N-01946 HNSCC Methylation_Array tumor CPT0163600006 203271750010_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 fb3bef46-ba36-4431-beb0-bac85adc50f8 a7e449fac5e523e069275294b484ab5c {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.miRNA-Seq.A.hg38 C3N-01946 HNSCC miRNA-Seq tissue_normal CPT0163610006 121dd92b-fadd-494e-9bdf-69b3254e39b4_mirnaseq_gdc_realn.bam 267836189 BAM harmonized CPTAC3 a2d4a109-9331-4349-a66a-267f49eda9b2 862b37bf70a7d9aa2895dfe172d4fffe {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01946.miRNA-Seq.S15_L001_R1.A C3N-01946 HNSCC miRNA-Seq tissue_normal CPT0163610006 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGTCA_S15_L001_R1_001.unaln.bam 239504639 BAM S15_L001_R1 submitted_unaligned CPTAC3 240b34b5-da58-4c4e-bf09-84d2b2f1d1cc 53027c8b7bd93edd31a3ac9fec50bc05 {"aliquot_tag": "ALQ_fa61370c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01946.miRNA-Seq.S30_L002_R1.T C3N-01946 HNSCC miRNA-Seq tumor CPT0163600009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L002_R1_001.unaln.bam 197117257 BAM S30_L002_R1 submitted_unaligned CPTAC3 a907b5eb-7495-4d86-9f08-d6e6e77d7894 35925c52869f6b9564fac281f327fafa {"aliquot_tag": "ALQ_57be032d", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.miRNA-Seq.T.hg38 C3N-01946 HNSCC miRNA-Seq tumor CPT0163600009 0325a52b-47c9-4957-af75-4af5ba192469_mirnaseq_gdc_realn.bam 219558353 BAM harmonized CPTAC3 667f9176-5935-4e29-babd-e75817f72b94 918cee3d11ea2007188e02b0a6d1239b {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.RNA-Seq.chimeric.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.chimeric.gdc_realn.bam 155150359 BAM chimeric harmonized CPTAC3 6b933ffb-99b7-4a4d-b90e-66fe45dfbc84 778d388bb3c42b6607cc8bd2537dcaf5 {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01946.RNA-Seq.chimeric.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.chimeric.gdc_realn.bam 227007587 BAM chimeric harmonized CPTAC3 7284cf8e-ced6-4ccf-93b9-ccd5b94c4403 be94e7e3b2d8bd6873b2566a89782e2d {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.RNA-Seq.genomic.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.genomic.gdc_realn.bam 7926979078 BAM genomic harmonized CPTAC3 9c6c9de1-2716-4a8d-9457-b25b09612294 d7d3c3632bcbd17b6a2a5d7b806b8750 {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01946.RNA-Seq.genomic.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.genomic.gdc_realn.bam 8618004500 BAM genomic harmonized CPTAC3 143366f3-a628-42e0-b2a6-03c1942e7567 b971f141643a493d4a00e5c74cdd4e0c {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.RNA-Seq.S13_L004_R1.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3945942467 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 a285fcf1-9433-4838-8e18-5b7ccc18fb9c f9e3461ff12ef5e81ba9e335bd899c17 {"aliquot_tag": "ALQ_fa61370c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01946.RNA-Seq.S13_L004_R2.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 4297857904 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 8d3692b0-d5ff-4d77-9fde-91092760a0f7 afa78feb14f01dd122344d6c8b3b9f0e {"aliquot_tag": "ALQ_fa61370c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01946.RNA-Seq.S6_L008_R1.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3961254197 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 4bef631b-a878-4d66-8e2f-6ff73688b407 b0b49801bc3a97d4ed25a191bdfebadd {"aliquot_tag": "ALQ_57be032d", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.RNA-Seq.S6_L008_R2.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4389235898 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 7a0b9a04-7dbd-4621-bd40-5c0b3a812c27 94519e842427eb56f6d19516a00680da {"aliquot_tag": "ALQ_57be032d", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.RNA-Seq.transcriptome.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.transcriptome.gdc_realn.bam 11125454531 BAM transcriptome harmonized CPTAC3 bd25bdf7-aaa9-46fb-91d5-825226344c6b df8c82e26ae7d496718290d0c24d74ad {"aliquot_tag": "ALQ_fa61370c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01946.RNA-Seq.transcriptome.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.transcriptome.gdc_realn.bam 11116238276 BAM transcriptome harmonized CPTAC3 01661503-be95-4951-aa50-39b0a87f6343 1bfe45477c04dd7751ec9e37e95c5440 {"aliquot_tag": "ALQ_57be032d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.WGS.N C3N-01946 HNSCC WGS blood_normal CPT0163640002 CPT0163640002.WholeGenome.RP-1303.bam 66088027627 BAM submitted_aligned CPTAC3 0a98bc63-79e5-4c0d-9534-3f3ffb72682d c185c5e9e18eeb047915bacc1ab3f6fc {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01946.WGS.N.hg38 C3N-01946 HNSCC WGS blood_normal CPT0163640002 390eb714-780f-4954-928b-792da90b82b6_wgs_gdc_realn.bam 97724134907 BAM harmonized CPTAC3 7ff9d781-7c61-4f2d-8a5b-a456078be6c1 513cabb73c50b823506afe61eaef6be4 {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01946.WGS.T C3N-01946 HNSCC WGS tumor CPT0163600006 CPT0163600006.WholeGenome.RP-1303.bam 70863339905 BAM submitted_aligned CPTAC3 16db9b10-7cc1-4a89-bb20-96ae6bb2e2d3 c50acb3b9e90dd524333911f6a73b3b2 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.WGS.T.hg38 C3N-01946 HNSCC WGS tumor CPT0163600006 48eaf6f1-9011-499d-bf9c-897fbaf8c623_wgs_gdc_realn.bam 101842741936 BAM harmonized CPTAC3 8caf2e9e-208b-43c2-aae1-c979e4bea753 70570edb7920ffcd2d34da544fb3a319 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.WXS.N C3N-01946 HNSCC WXS blood_normal CPT0163640002 CPT0163640002.WholeExome.RP-1303.bam 26838820646 BAM submitted_aligned CPTAC3 5df5dd93-4eca-475c-801c-28f7cc6f89c7 d320c72f0a92fc115a954385b90a22b1 {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01946.WXS.N.hg38 C3N-01946 HNSCC WXS blood_normal CPT0163640002 390eb714-780f-4954-928b-792da90b82b6_wxs_gdc_realn.bam 36424769818 BAM harmonized CPTAC3 84b054b6-9984-44f2-9c80-f50f4f0599da c9bf03ef15fd52f823d739dc075d658f {"aliquot_tag": "ALQ_35ec7c65", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01946.WXS.T C3N-01946 HNSCC WXS tumor CPT0163600006 CPT0163600006.WholeExome.RP-1303.bam 23676146676 BAM submitted_aligned CPTAC3 4216f7d9-60eb-4a0d-a7e4-09f312ef1a5c c91f40f17e86c9e33bad778a7f4172d3 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01946.WXS.T.hg38 C3N-01946 HNSCC WXS tumor CPT0163600006 48eaf6f1-9011-499d-bf9c-897fbaf8c623_wxs_gdc_realn.bam 32592280041 BAM harmonized CPTAC3 82841608-b7e3-489e-877b-f606cf6288fb f3d0458b25e242fffcf4418a209801a1 {"aliquot_tag": "ALQ_c7011ebc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.MethArray.Green.A C3N-01947 HNSCC Methylation_Array tissue_normal CPT0226090006 203271740101_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 bf7d7394-0448-48d7-ac28-51197bf3dac6 9744d598f2110ad8ddf5db452f235895 {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.MethArray.Green.T C3N-01947 HNSCC Methylation_Array tumor CPT0226030006 203273200155_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8e6b4f75-cbbb-46ce-8bb3-8ba95d6d87a0 c6c4870b35e0c899e483205a19ce15f3 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.MethArray.Red.A C3N-01947 HNSCC Methylation_Array tissue_normal CPT0226090006 203271740101_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 ec559ff2-ea20-4260-b04c-0c51eadc16ef 413ed56f448a37b61248476a67d1626c {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.MethArray.Red.T C3N-01947 HNSCC Methylation_Array tumor CPT0226030006 203273200155_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 370cce25-2497-4eea-8b6c-36f96bb1c124 5639dd5449cada6bc1b72d25cc3e21ca {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.miRNA-Seq.A.hg38 C3N-01947 HNSCC miRNA-Seq tissue_normal CPT0226090009 f5541581-ea3b-4a4d-976e-ac2299918e33_mirnaseq_gdc_realn.bam 284313593 BAM harmonized CPTAC3 47d62272-35c7-4679-8397-51a544648db2 69edab7ff582822f5be856e6f8d45296 {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.miRNA-Seq.S44_L004_R1.T C3N-01947 HNSCC miRNA-Seq tumor CPT0226030009 190228_UNC32-K00270_0151_AHYLY3BBXX_TATAAT_S44_L004_R1_001.unaln.bam 301353967 BAM S44_L004_R1 submitted_unaligned CPTAC3 288508d8-eead-4c3c-b78b-7a87826c45ae 0633427f977d8bb5d945bc7f7424197c {"aliquot_tag": "ALQ_29b88778", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.miRNA-Seq.S7_L005_R1.A C3N-01947 HNSCC miRNA-Seq tissue_normal CPT0226090009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L005_R1_001.unaln.bam 249741580 BAM S7_L005_R1 submitted_unaligned CPTAC3 7fa77ad4-1abf-4f48-9e95-11cbe075acc8 01fa5fffa0ec393a4baf55d9ce114da5 {"aliquot_tag": "ALQ_63089fd9", "sample": "S7", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.miRNA-Seq.T.hg38 C3N-01947 HNSCC miRNA-Seq tumor CPT0226030009 eaa8b65b-bd8e-4271-933b-2c2c617a546d_mirnaseq_gdc_realn.bam 334091792 BAM harmonized CPTAC3 0a16aae8-c5eb-4ec3-bdcd-7c754586fe43 72044d9522b02b26ecc0282f0d252a0d {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.chimeric.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.chimeric.gdc_realn.bam 74641115 BAM chimeric harmonized CPTAC3 582945a7-1359-4d0f-8872-4be6ec1a56cd 7d97176b413b9134d3802b6d5ec612e5 {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.RNA-Seq.chimeric.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.chimeric.gdc_realn.bam 189925120 BAM chimeric harmonized CPTAC3 7f72bbc7-e655-4396-80b4-768815748dd0 ff2fe877d96c99999ae3f256b205b2e2 {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.chimeric.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.chimeric.gdc_realn.bam 163855292 BAM chimeric harmonized CPTAC3 a550e5c1-5073-430c-8a7b-4c9f8359a09f 4a247b1a369027c214fd98445f344456 {"aliquot_tag": "ALQ_1a1e8ec1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.genomic.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.genomic.gdc_realn.bam 9295755367 BAM genomic harmonized CPTAC3 0445d0f1-fc4b-48f0-ab75-ace4e783adfa ab55313ab24724a197757f62359adfbb {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.RNA-Seq.genomic.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.genomic.gdc_realn.bam 7756893982 BAM genomic harmonized CPTAC3 2785a40f-d7fc-4245-8c0d-e64c26db338d 17ea94ee5c3c4761eaaefb57fa6ff2d6 {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.genomic.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.genomic.gdc_realn.bam 11234328692 BAM genomic harmonized CPTAC3 c80e1b06-f572-438a-b50b-caca1aaa3f7f 4f09082684cb220eaab86c3c21f6cd64 {"aliquot_tag": "ALQ_1a1e8ec1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.S20_L004_R1.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R1_001.fastq.gz 4514614104 FASTQ S20_L004_R1 submitted_unaligned CPTAC3 ca3f3f40-2a1c-43fd-8acf-ecac3664de15 e03a435dc096200dec0b475bbf4e0ecb {"aliquot_tag": "ALQ_63089fd9", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.RNA-Seq.S20_L004_R2.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R2_001.fastq.gz 5046170026 FASTQ S20_L004_R2 submitted_unaligned CPTAC3 91673d4f-c639-4c8d-9656-744ca4f63274 298886128322637af444bfb6a002bd68 {"aliquot_tag": "ALQ_63089fd9", "sample": "S20", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.RNA-Seq.S81_R1.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R1_001.fastq.gz 6855828658 FASTQ S81_R1 submitted_unaligned CPTAC3 14e1d23e-8f61-4178-ba06-3ef2be77ee67 6daab72f340870e6f55d3ee719030162 {"aliquot_tag": "ALQ_1a1e8ec1", "sample": "S81", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.S81_R2.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R2_001.fastq.gz 6980248291 FASTQ S81_R2 submitted_unaligned CPTAC3 659107b5-4ad8-4ada-89f9-6e73024c0a67 6188dce87cf11b70bb58d211f4141e94 {"aliquot_tag": "ALQ_1a1e8ec1", "sample": "S81", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.S9_L007_R1.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R1_001.fastq.gz 3553427117 FASTQ S9_L007_R1 submitted_unaligned CPTAC3 4f5c86dc-d9e9-4143-8559-2f2aa8a0e91e b9d7ca70149836e3dbc82a493db3c230 {"aliquot_tag": "ALQ_29b88778", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.S9_L007_R2.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R2_001.fastq.gz 4125349541 FASTQ S9_L007_R2 submitted_unaligned CPTAC3 1c643fde-ac15-4035-8d06-d1417ae3c02c 20acdeba7718a75b0c55d4bc917653e0 {"aliquot_tag": "ALQ_29b88778", "sample": "S9", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.transcriptome.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.transcriptome.gdc_realn.bam 13270113918 BAM transcriptome harmonized CPTAC3 a015852f-6dda-448a-8754-fa9163ed2f87 6919a97b4001eb504ec94938fdb49aa6 {"aliquot_tag": "ALQ_63089fd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.RNA-Seq.transcriptome.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.transcriptome.gdc_realn.bam 10844854391 BAM transcriptome harmonized CPTAC3 b7db540a-067a-458d-bccc-5584e91f777e e973aedb591e39245817019505bdc446 {"aliquot_tag": "ALQ_29b88778", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.RNA-Seq.transcriptome.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.transcriptome.gdc_realn.bam 6690276127 BAM transcriptome harmonized CPTAC3 5aceb83d-37a2-4b39-a697-0a6037dc5145 5f7750651c6d788297128347136ea937 {"aliquot_tag": "ALQ_1a1e8ec1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.WGS.N C3N-01947 HNSCC WGS blood_normal CPT0226120002 CPT0226120002.WholeGenome.RP-1303.bam 71999240052 BAM submitted_aligned CPTAC3 cee9e59d-7d3e-4bd9-acbd-7855603bedc8 1ca2005ae0f1612faf5ee30368035046 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01947.WGS.N.hg38 C3N-01947 HNSCC WGS blood_normal CPT0226120002 38f4020d-3686-4770-b2b0-8fe846b0ea68_wgs_gdc_realn.bam 104976381395 BAM harmonized CPTAC3 3eb615ce-5721-46ad-b191-b45e612e7ff0 ef4b9aceca029b63730012ce3cfcccd5 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01947.WGS.T C3N-01947 HNSCC WGS tumor CPT0226030006 CPT0226030006.WholeGenome.RP-1303.bam 81844887395 BAM submitted_aligned CPTAC3 082b1a05-87f4-49d0-a1a3-21e88e31cc87 7806d1559656bd7c087a34094164941a {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.WGS.T.hg38 C3N-01947 HNSCC WGS tumor CPT0226030006 5aaff976-9620-4d11-ab21-3ebe72ea590e_wgs_gdc_realn.bam 121489047782 BAM harmonized CPTAC3 426887e9-3e16-4e9b-b0ff-bbac82dd534b 86acb84315b914c332ca7ef54fdcfc26 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.WXS.A C3N-01947 HNSCC WXS tissue_normal CPT0226090006 CPT0226090006.WholeExome.RP-1303.bam 23053957708 BAM submitted_aligned CPTAC3 0f02d470-80ff-46d6-b38a-fff54d593c98 9fc05590f2d86d858d2bc18a03bb9bc6 {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.WXS.A.hg38 C3N-01947 HNSCC WXS tissue_normal CPT0226090006 b2afae54-3e46-4ccd-b997-41e6370b4acb_wxs_gdc_realn.bam 31699179453 BAM harmonized CPTAC3 50d91f11-2d86-4489-9cf5-bd34ca377975 89e3e28ab939e3ef77605bf25a6ca720 {"aliquot_tag": "ALQ_f3b78248", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01947.WXS.N C3N-01947 HNSCC WXS blood_normal CPT0226120002 CPT0226120002.WholeExome.RP-1303.bam 23695112382 BAM submitted_aligned CPTAC3 e1694fcc-b966-48bf-b470-96672f167b40 fed732a644fbb8b8576a62cfe9632d37 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01947.WXS.N.hg38 C3N-01947 HNSCC WXS blood_normal CPT0226120002 38f4020d-3686-4770-b2b0-8fe846b0ea68_wxs_gdc_realn.bam 32894042269 BAM harmonized CPTAC3 18933760-3ca0-45db-b306-22ced8c511c7 7eaa6a1ed70ae50e8af1028d4b996a41 {"aliquot_tag": "ALQ_4856a4e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01947.WXS.T C3N-01947 HNSCC WXS tumor CPT0226030006 CPT0226030006.WholeExome.RP-1303.bam 28759435238 BAM submitted_aligned CPTAC3 187233e5-35a7-4767-934f-7de9d5d1b411 c7deb37ff33b2b45b61c8c27dea2d9b5 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01947.WXS.T.hg38 C3N-01947 HNSCC WXS tumor CPT0226030006 5aaff976-9620-4d11-ab21-3ebe72ea590e_wxs_gdc_realn.bam 39542294343 BAM harmonized CPTAC3 b2aca2b0-8e2d-4bfa-9196-8b00e7ff85f3 6820b7f618ee44aa1616c73222ec8d14 {"aliquot_tag": "ALQ_b9079ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.MethArray.Green.T C3N-01948 HNSCC Methylation_Array tumor CPT0163650006 203219650071_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 2179edf4-cb1d-4da5-b8e8-87f9c1f7d399 7a8868bd470ba6776bc591439e7ea4e7 {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.MethArray.Red.T C3N-01948 HNSCC Methylation_Array tumor CPT0163650006 203219650071_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 68f6c3af-2e42-4dde-83c2-f6b0708d9033 11e1783a497f6790e09d18c1a8dea3ff {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.miRNA-Seq.A.hg38 C3N-01948 HNSCC miRNA-Seq tissue_normal CPT0163670006 c8e9a357-28fa-4ffb-878a-561b9d5502fd_mirnaseq_gdc_realn.bam 280297813 BAM harmonized CPTAC3 00b83e00-4fe8-4211-a79b-aa6047b747ed 6408acdc915e82cc4b0d0e3e8534e405 {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01948.miRNA-Seq.S16_L001_R1.A C3N-01948 HNSCC miRNA-Seq tissue_normal CPT0163670006 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L001_R1_001.unaln.bam 244314862 BAM S16_L001_R1 submitted_unaligned CPTAC3 4731cff6-d0b5-4c0b-8b79-d1dbfcc435ac c678147b1434f3209a49f2b660add028 {"aliquot_tag": "ALQ_7521c2ac", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01948.miRNA-Seq.S31_L002_R1.T C3N-01948 HNSCC miRNA-Seq tumor CPT0163650009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L002_R1_001.unaln.bam 239616852 BAM S31_L002_R1 submitted_unaligned CPTAC3 016e8b0a-f641-4742-8bea-107004dba1b1 81255ca78dc350098b73c3198b2b56c0 {"aliquot_tag": "ALQ_9f5e8c5d", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.miRNA-Seq.T.hg38 C3N-01948 HNSCC miRNA-Seq tumor CPT0163650009 5809c33b-a2de-422e-9146-1660a1c53afa_mirnaseq_gdc_realn.bam 263763481 BAM harmonized CPTAC3 f5068888-22f1-45a0-a30d-0d2dde2c04e6 2c17d8a226178a3bbfd4766b99e1be19 {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.chimeric.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.chimeric.gdc_realn.bam 104607426 BAM chimeric harmonized CPTAC3 264111fb-a67f-44f0-973a-6c6789a257f7 ef5060daf80b244f3c2a92e62808c84c {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01948.RNA-Seq.chimeric.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.chimeric.gdc_realn.bam 224807968 BAM chimeric harmonized CPTAC3 1ed06c59-6e8c-4fd5-a1f2-d29d00cc8d8f ef6b0a9b02a367bc1ef1b9881ab87064 {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.chimeric.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.chimeric.gdc_realn.bam 225962716 BAM chimeric harmonized CPTAC3 bae17bdc-dc11-4bc2-9a2d-4b0334cdba96 2ba1c76215428bc2d578a069a6702370 {"aliquot_tag": "ALQ_2444eb26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.genomic.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.genomic.gdc_realn.bam 8273526545 BAM genomic harmonized CPTAC3 7afa1ba4-960a-44ae-9933-47979b3ad769 80109dc45dd14177229ad8d05d09aeaa {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01948.RNA-Seq.genomic.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.genomic.gdc_realn.bam 8584638397 BAM genomic harmonized CPTAC3 8de44ddd-ce91-4239-834f-3f0235338bdc 7606cd6c53c85af2a35d4c1915fba26c {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.genomic.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.genomic.gdc_realn.bam 12787746414 BAM genomic harmonized CPTAC3 7840ca3c-439c-413a-bb52-7c36e3518812 ffe5f26c6948c596f3632c5707c8dcc7 {"aliquot_tag": "ALQ_2444eb26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.S18_L005_R1.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R1_001.fastq.gz 4007961238 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 a57e46c4-1380-404f-bab0-d5b57b7b5d76 2e2f41f4263bc2170fb30fb0288e1f0e {"aliquot_tag": "ALQ_7521c2ac", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01948.RNA-Seq.S18_L005_R2.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R2_001.fastq.gz 3945256743 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 bba9fb2f-9c78-4bd5-8b6e-ab7ff095854d 0b43ff5a1c0758f3db4adb6c1b988577 {"aliquot_tag": "ALQ_7521c2ac", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01948.RNA-Seq.S20_R1.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R1_001.fastq.gz 6907483238 FASTQ S20_R1 submitted_unaligned CPTAC3 019d4f1f-6d01-4c35-8b50-7d3e6fca8a28 704dfec0abbc486bedaee48a1fea4dab {"aliquot_tag": "ALQ_2444eb26", "sample": "S20", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.S20_R2.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R2_001.fastq.gz 7230206666 FASTQ S20_R2 submitted_unaligned CPTAC3 17773d4d-6dec-406b-8732-26a5c646cb61 2165bf5a6cf082bd2e92ffc60f43ac7f {"aliquot_tag": "ALQ_2444eb26", "sample": "S20", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.S8_L008_R1.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R1_001.fastq.gz 4052088988 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 60cda52a-c7d2-4dcf-9b62-677ae7826510 27268a45a53d849abffbab9ab8ddabd5 {"aliquot_tag": "ALQ_9f5e8c5d", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.S8_L008_R2.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4504314877 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 ff46082c-3142-4784-ac8f-225a494003ab 4f0b43e9824da100995fba67066a0ce7 {"aliquot_tag": "ALQ_9f5e8c5d", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.transcriptome.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.transcriptome.gdc_realn.bam 10166956283 BAM transcriptome harmonized CPTAC3 994cebdd-e1e4-4243-bb17-0ffcf4eb4f2a f0fde2b2515355814bc06df6733b0dd9 {"aliquot_tag": "ALQ_7521c2ac", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01948.RNA-Seq.transcriptome.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.transcriptome.gdc_realn.bam 11628552054 BAM transcriptome harmonized CPTAC3 1573b5b9-7c82-41d4-b9aa-be80aaa9086b b47cdd1a332a4710dec7b3aeb900a1df {"aliquot_tag": "ALQ_9f5e8c5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.RNA-Seq.transcriptome.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.transcriptome.gdc_realn.bam 7213530941 BAM transcriptome harmonized CPTAC3 206cb42e-9d2d-4230-ae2d-607a507807bc 7d36e044250637d992fe5a1de815c2a1 {"aliquot_tag": "ALQ_2444eb26", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.WGS.N C3N-01948 HNSCC WGS blood_normal CPT0163710002 CPT0163710002.WholeGenome.RP-1303.bam 55796566408 BAM submitted_aligned CPTAC3 ca5d1588-46c2-4b55-a902-43ef3a6273ef a1c600e5acce5f5b9754065ebcaa2ab3 {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01948.WGS.N.hg38 C3N-01948 HNSCC WGS blood_normal CPT0163710002 b04281f0-de7e-4330-b977-5149689f34ef_wgs_gdc_realn.bam 81701256504 BAM harmonized CPTAC3 4382318b-b7f8-4457-9641-07a9c232e427 b9e2368ee3e5603bbf8116ed7fe89fb6 {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01948.WGS.T C3N-01948 HNSCC WGS tumor CPT0163650006 CPT0163650006.WholeGenome.RP-1303.bam 86251464852 BAM submitted_aligned CPTAC3 9ff79dda-7cb6-4f15-ba73-734b876883c5 771a8f4c06dbd1ee81c8766400874b40 {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.WGS.T.hg38 C3N-01948 HNSCC WGS tumor CPT0163650006 5c9b7a28-b4f0-4576-be00-c401024ca6c6_wgs_gdc_realn.bam 128157211222 BAM harmonized CPTAC3 408935a5-697b-44ac-90e0-f3758cd39b96 a6767ddc465c3ca2afd5f73a94265d1e {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.WXS.N C3N-01948 HNSCC WXS blood_normal CPT0163710002 CPT0163710002.WholeExome.RP-1303.bam 23149741803 BAM submitted_aligned CPTAC3 5b69f8fd-d816-4adf-90fe-525c1ddcf5f6 7519afb282d8e63aa068c6e1baab1a88 {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01948.WXS.N.hg38 C3N-01948 HNSCC WXS blood_normal CPT0163710002 b04281f0-de7e-4330-b977-5149689f34ef_wxs_gdc_realn.bam 31690099940 BAM harmonized CPTAC3 2f036077-9582-4255-8874-8708f879fc3d b629d7356d6896cbf56b01e9db2c82fe {"aliquot_tag": "ALQ_365020b0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01948.WXS.T C3N-01948 HNSCC WXS tumor CPT0163650006 CPT0163650006.WholeExome.RP-1303.bam 26900134071 BAM submitted_aligned CPTAC3 4af5d558-88a4-42cf-9230-5fe31dbf0f64 32f4f52e995d6fceb2ab7811233ae564 {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01948.WXS.T.hg38 C3N-01948 HNSCC WXS tumor CPT0163650006 5c9b7a28-b4f0-4576-be00-c401024ca6c6_wxs_gdc_realn.bam 36665752671 BAM harmonized CPTAC3 b98ff843-e232-4c69-8ad9-57bc10e543fa fafbfa8368804b5637593633181ba19b {"aliquot_tag": "ALQ_fe191cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.MethArray.Green.T C3N-01989 CCRCC Methylation_Array tumor CPT0112230009 203219650176_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 59650298-cabd-4fba-8260-a9c4f5e6e275 023d4ba14b860d5dc7337d84a867bc62 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.MethArray.Red.T C3N-01989 CCRCC Methylation_Array tumor CPT0112230009 203219650176_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 63a7a8d2-089c-4ee2-9891-2f7dbc8df9f9 ac473c0d4e2822dad0122814386650c9 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.miRNA-Seq.A.hg38 C3N-01989 CCRCC miRNA-Seq tissue_normal CPT0112240007 c460ed67-37a9-4fb7-ba48-29bc6f30354f_mirnaseq_gdc_realn.bam 233743845 BAM harmonized CPTAC3 0fc3bbb6-cb51-4c01-adb1-8401463ffcb9 1a169d75e72748e33af770f803ced298 {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01989.miRNA-Seq.S16_L002_R1.T C3N-01989 CCRCC miRNA-Seq tumor CPT0112230006 190108_UNC31-K00269_0176_AHYGLVBBXX_CCGTCC_S16_L002_R1_001.unaln.bam 238785987 BAM S16_L002_R1 submitted_unaligned CPTAC3 a9822ad8-0fd0-492d-bf9d-a48ab3c32bdb 7c5c38adbf0f4c7fe229759e4e780111 {"aliquot_tag": "ALQ_b78224d7", "sample": "S16", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.miRNA-Seq.S48_L005_R1.A C3N-01989 CCRCC miRNA-Seq tissue_normal CPT0112240007 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGGCA_S48_L005_R1_001.unaln.bam 212967817 BAM S48_L005_R1 submitted_unaligned CPTAC3 13a30f6b-0571-4cb6-9a33-42ce0dee8ea3 e705990dc4e9e2ded8884df2fbe9870d {"aliquot_tag": "ALQ_72a5c851", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01989.miRNA-Seq.T.hg38 C3N-01989 CCRCC miRNA-Seq tumor CPT0112230006 af52fa65-4ad7-4882-bb42-0764f896a3b9_mirnaseq_gdc_realn.bam 265616704 BAM harmonized CPTAC3 546fbc91-f7a6-44b3-a44d-66e143261877 e2e50a5842d7fd4544dcecfa9b814879 {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.RNA-Seq.chimeric.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.chimeric.gdc_realn.bam 35258362 BAM chimeric harmonized CPTAC3 42c9fcff-a5f0-465a-b019-7a44aa64fcf0 1aceb3f34730f1653ce46ab358c1cbef {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01989.RNA-Seq.chimeric.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.chimeric.gdc_realn.bam 36056168 BAM chimeric harmonized CPTAC3 e942654d-3c0e-4bca-88f4-2a31003c365d 10c09702411ec317364c10b369e2e2d3 {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.RNA-Seq.genomic.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.genomic.gdc_realn.bam 8889351115 BAM genomic harmonized CPTAC3 140827a1-f22b-4753-b426-a759f8f00446 8c1f5c81a504b59313fe3eb9f8dd7b4c {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01989.RNA-Seq.genomic.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.genomic.gdc_realn.bam 8444396734 BAM genomic harmonized CPTAC3 75d6875e-b81c-449a-83e3-7845960b4b0b c4ef769ae833f34692a4f3002f92505a {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.RNA-Seq.S4_L007_R1.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R1_001.fastq.gz 3924002741 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 f5421d66-b130-4b37-9c56-a4b630cf8b1f f7e0b608137fe2f892dfd71bb3e4866f {"aliquot_tag": "ALQ_b78224d7", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.RNA-Seq.S4_L007_R2.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R2_001.fastq.gz 4045843004 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 994ac653-5dea-46a6-8d78-5df97a55295a 49c6fd0595f34247326317a34a4e9b12 {"aliquot_tag": "ALQ_b78224d7", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.RNA-Seq.S79_L008_R1.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R1_001.fastq.gz 4159245734 FASTQ S79_L008_R1 submitted_unaligned CPTAC3 7dc76f2e-e4fe-48ed-ac8d-046863cb0071 825d1aa9e472abd5d249442fdcbc809e {"aliquot_tag": "ALQ_72a5c851", "sample": "S79", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01989.RNA-Seq.S79_L008_R2.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R2_001.fastq.gz 4333735532 FASTQ S79_L008_R2 submitted_unaligned CPTAC3 775bd14f-1502-47bb-93aa-e9fa6b4e8907 d079d0483e80f2fb25070aff48c318e3 {"aliquot_tag": "ALQ_72a5c851", "sample": "S79", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01989.RNA-Seq.transcriptome.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.transcriptome.gdc_realn.bam 10781865834 BAM transcriptome harmonized CPTAC3 fabc744e-5585-4e3a-a72e-6f0c29a01701 d643ae59fb540c55ef18bc133d9db073 {"aliquot_tag": "ALQ_72a5c851", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01989.RNA-Seq.transcriptome.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.transcriptome.gdc_realn.bam 10523642081 BAM transcriptome harmonized CPTAC3 558c972f-8c3e-4869-b2ce-ae89bedc6b2f 3c65ad35b0222eb1f2cbed8bb2571809 {"aliquot_tag": "ALQ_b78224d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.WGS.N C3N-01989 CCRCC WGS blood_normal CPT0112340002 CPT0112340002.WholeGenome.RP-1303.bam 62727726879 BAM submitted_aligned CPTAC3 2d5b16d3-0c8a-4c80-8211-7a99c8f5eef7 27706cd5e8be436532fcc31ce797ff77 {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01989.WGS.N.hg38 C3N-01989 CCRCC WGS blood_normal CPT0112340002 696e360d-4ead-4cec-bc8a-323b5e6cb854_wgs_gdc_realn.bam 89811356772 BAM harmonized CPTAC3 9d3b1a82-148a-459b-b73a-e9d436adc5bc 7ac747a3506ff4799579df94e0eee7cc {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01989.WGS.T C3N-01989 CCRCC WGS tumor CPT0112230009 CPT0112230009.WholeGenome.RP-1303.bam 79636519444 BAM submitted_aligned CPTAC3 6c876119-7180-4873-bd0c-0867630ccc55 85f6f872494391b3a02324b42a0865c3 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.WGS.T.hg38 C3N-01989 CCRCC WGS tumor CPT0112230009 9ec3dccb-a6c3-4d10-9647-2d4706ea98ae_wgs_gdc_realn.bam 113696066042 BAM harmonized CPTAC3 ef6231dc-75dd-4285-adc2-e07679ab03c1 32b98e91636bbe2ae8d10fd267660645 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.WXS.N C3N-01989 CCRCC WXS blood_normal CPT0112340002 CPT0112340002.WholeExome.RP-1303.bam 25279864694 BAM submitted_aligned CPTAC3 d05f6b44-dd08-46dc-b77e-f644d093004d a8a9bf398c50003bae86bae1d18472bd {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01989.WXS.N.hg38 C3N-01989 CCRCC WXS blood_normal CPT0112340002 696e360d-4ead-4cec-bc8a-323b5e6cb854_wxs_gdc_realn.bam 34608066561 BAM harmonized CPTAC3 41ddda8c-4bf9-4b8c-b739-09f95f792f62 d2e628692b7a3583ce3729f064debaed {"aliquot_tag": "ALQ_c993ef7b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01989.WXS.T C3N-01989 CCRCC WXS tumor CPT0112230009 CPT0112230009.WholeExome.RP-1303.bam 24191229638 BAM submitted_aligned CPTAC3 fbc9d3d4-b21e-48ed-9021-fa01e50b3d39 be017622c1ec68e50885e2149d1943d5 {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01989.WXS.T.hg38 C3N-01989 CCRCC WXS tumor CPT0112230009 9ec3dccb-a6c3-4d10-9647-2d4706ea98ae_wxs_gdc_realn.bam 32889682314 BAM harmonized CPTAC3 9a9ead26-c246-46ce-af13-3ad20b4e3561 ea7b688adf79dbbbf1e9e39f4659e67e {"aliquot_tag": "ALQ_273d3946", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.MethArray.Green.A C3N-01997 PDA Methylation_Array tissue_normal CPT0138890006 203561450046_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 89a08b00-af9c-4744-b184-aee780103eb5 3f6b6237c55b80cd154c81f4a3869e4b {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01997.MethArray.Green.T C3N-01997 PDA Methylation_Array tumor CPT0138900010 203219670066_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fcef483a-aab8-4ed3-9f6a-223da469aa1d ac76320c2c6f09fbdd3b61f342ffaae2 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.MethArray.Red.A C3N-01997 PDA Methylation_Array tissue_normal CPT0138890006 203561450046_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 7f7d432e-9640-44b7-a1ee-8a541ba9a66b 02f4ef331a6714916e62e7dca12cf6ac {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01997.MethArray.Red.T C3N-01997 PDA Methylation_Array tumor CPT0138900010 203219670066_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 ecc0c6c4-bf9d-44df-a8a8-9cdf4b3c4b4d fdcea905f79e36a720d68bf22c49008d {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.miRNA-Seq.S8_L001_R1.T C3N-01997 PDA miRNA-Seq tumor CPT0138900007 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L001_R1_001.unaln.bam 161987937 BAM S8_L001_R1 submitted_unaligned CPTAC3 f5d212e4-e0fd-4096-9fb7-2c96d4b77bf1 20cd172262dcc771ecf6047fe545929c {"aliquot_tag": "ALQ_bb7c661", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.miRNA-Seq.T.hg38 C3N-01997 PDA miRNA-Seq tumor CPT0138900007 405a77a1-3f89-43bc-aa70-9e2279a3f535_mirnaseq_gdc_realn.bam 182314514 BAM harmonized CPTAC3 58b5b8be-c1bd-4f07-84fa-f2b6da9e9f78 e047b91533d8938eaf6bc3cd87ee65f4 {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.RNA-Seq.chimeric.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.chimeric.gdc_realn.bam 90319347 BAM chimeric harmonized CPTAC3 cfe0f701-ab43-46c1-81f2-f62ee4aebb28 9be61252a22a0a307c8327b382ceffc7 {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.RNA-Seq.genomic.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.genomic.gdc_realn.bam 8865089730 BAM genomic harmonized CPTAC3 1e76776e-0234-4132-ac80-b02e2ef66464 26ea44862876768aa23d8d0a43338647 {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.RNA-Seq.S7_L007_R1.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R1_001.fastq.gz 4007138952 FASTQ S7_L007_R1 submitted_unaligned CPTAC3 177543fe-9718-4c49-bb13-0ec3f60ed071 5c99557e2e1b1de313742ccf60852fc6 {"aliquot_tag": "ALQ_bb7c661", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.RNA-Seq.S7_L007_R2.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R2_001.fastq.gz 4453037870 FASTQ S7_L007_R2 submitted_unaligned CPTAC3 f4c37175-17fd-4651-a5f0-fa665eb50b0c c535d62eedc0365628fc91a957bc2bb4 {"aliquot_tag": "ALQ_bb7c661", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.RNA-Seq.transcriptome.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.transcriptome.gdc_realn.bam 11581207585 BAM transcriptome harmonized CPTAC3 38e11053-6ce6-4e5d-8490-10273cef6bee 628880922a78d503041e17b80b86383e {"aliquot_tag": "ALQ_bb7c661", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WGS.A C3N-01997 PDA WGS tissue_normal CPT0138890006 CPT0138890006.WholeGenome.RP-1303.bam 67950812923 BAM submitted_aligned CPTAC3 2a4e4309-037a-4d92-9fbb-bf9dbca0df14 770540fb88ba4c8b8143c421057e2585 {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01997.WGS.A.hg38 C3N-01997 PDA WGS tissue_normal CPT0138890006 843ad039-ed5b-423c-8328-51d2f31f1610_wgs_gdc_realn.bam 99385300021 BAM harmonized CPTAC3 0c39a9c7-eaa2-4948-9a7c-4db2b3ddfb87 88d9abae08842b64e0eaadd82e3ba52d {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01997.WGS.N C3N-01997 PDA WGS blood_normal CPT0138920002 CPT0138920002.WholeGenome.RP-1303.bam 66661887435 BAM submitted_aligned CPTAC3 61e81915-b2a2-474a-99f9-3280762b2ff2 6c9dfec9e9d0e346b98a82d47825b92a {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01997.WGS.N.hg38 C3N-01997 PDA WGS blood_normal CPT0138920002 391d63f2-9a50-4c5e-99c2-de8ab4715a43_wgs_gdc_realn.bam 96093024533 BAM harmonized CPTAC3 df60b3ea-48b8-4ecf-b5fa-8d457082303a d07f48b6ff16301348e0f93d12b95b78 {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01997.WGS.T C3N-01997 PDA WGS tumor CPT0138900010_1 CPT0138900010_1.WholeGenome.RP-1303.bam 124196101211 BAM submitted_aligned CPTAC3 cf56c670-5ad2-4da3-a2ad-1d5a15a4bdf9 533062d40c8925a4a3a514f1ca8c7d57 {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WGS.T C3N-01997 PDA WGS tumor CPT0138900010 CPT0138900010.WholeGenome.RP-1303.bam 56483933997 BAM submitted_aligned CPTAC3 11af7079-ecaa-4674-bc69-d4e3577b1890 cfc44fc7207e104db452b2936d99a599 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WGS.T.hg38 C3N-01997 PDA WGS tumor CPT0138900010_1 d74c1adc-cddf-49a1-a6ee-a6a65b6ed320_wgs_gdc_realn.bam 181010347994 BAM harmonized CPTAC3 9d8779cd-9d05-4a36-bc40-3ae7448538fd eb0077a1dd970d0f06e588de7e44d5aa {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WGS.T.hg38 C3N-01997 PDA WGS tumor CPT0138900010 39582c29-06d3-42eb-ba69-56b832e25378_wgs_gdc_realn.bam 83312656061 BAM harmonized CPTAC3 927c9bf1-c024-4f36-a619-d1eac7b5fb02 4e16cffac35aee45be03e6588af03e11 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WXS.A C3N-01997 PDA WXS tissue_normal CPT0138890006 CPT0138890006.WholeExome.RP-1303.bam 24048765974 BAM submitted_aligned CPTAC3 4afa91c2-ee57-423f-80b5-b6dd4b0decbf 3d2b27a212952cdeedd3371fc7df5da1 {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01997.WXS.A.hg38 C3N-01997 PDA WXS tissue_normal CPT0138890006 843ad039-ed5b-423c-8328-51d2f31f1610_wxs_gdc_realn.bam 32082363047 BAM harmonized CPTAC3 a69c171e-20c2-45cf-8164-d4af0ad8460a ec576015c149e65466f12e69394178cd {"aliquot_tag": "ALQ_bafc4723", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01997.WXS.N C3N-01997 PDA WXS blood_normal CPT0138920002 CPT0138920002.WholeExome.RP-1303.bam 29359048555 BAM submitted_aligned CPTAC3 13e26585-0dbc-461b-a22e-61b556b0f2a2 6abf847c200ebb367f1d6195c3837d32 {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01997.WXS.N.hg38 C3N-01997 PDA WXS blood_normal CPT0138920002 391d63f2-9a50-4c5e-99c2-de8ab4715a43_wxs_gdc_realn.bam 39977633716 BAM harmonized CPTAC3 48c651f2-1e2c-4dd3-961b-a265e4f4b11e 42a579311bc45b0e80af7b7f39faa78d {"aliquot_tag": "ALQ_11d618e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01997.WXS.T C3N-01997 PDA WXS tumor CPT0138900010_1 CPT0138900010_1.WholeExome.RP-1303.bam 49589167474 BAM submitted_aligned CPTAC3 7afcad68-e502-4c1d-a76c-cb0e7275e097 68be94fcabbb668934a75f08a350e3e4 {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WXS.T C3N-01997 PDA WXS tumor CPT0138900010 CPT0138900010.WholeExome.RP-1303.bam 26049169606 BAM submitted_aligned CPTAC3 31056264-a20c-43b1-9218-d27b6baee4e7 881be75aac1e329475674f680684b376 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WXS.T.hg38 C3N-01997 PDA WXS tumor CPT0138900010_1 d74c1adc-cddf-49a1-a6ee-a6a65b6ed320_wxs_gdc_realn.bam 68096460372 BAM harmonized CPTAC3 8658b584-6db3-44b6-90f3-d1fc6a1bf216 eae864ae7cda10c735bb27991afb8a9a {"aliquot_tag": "ALQ_9e36146a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01997.WXS.T.hg38 C3N-01997 PDA WXS tumor CPT0138900010 39582c29-06d3-42eb-ba69-56b832e25378_wxs_gdc_realn.bam 35385165928 BAM harmonized CPTAC3 cd70aa34-392f-4078-881d-cdb139d2a9df a34036c384b7e4007d83592791b342a0 {"aliquot_tag": "ALQ_8cc86283", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.MethArray.Green.A C3N-01998 PDA Methylation_Array tissue_normal CPT0138990006 203561450018_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e0971cc8-2322-4d63-a6a5-b64fa1ce6ddf a5be7e7bd619b16f734fc395479626c1 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.MethArray.Green.T C3N-01998 PDA Methylation_Array tumor CPT0139000010 203219650169_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a1d49124-a9bf-4262-a99e-b3e758622812 ba7314bca1f1007056b70fc7fd0e93a6 {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.MethArray.Red.A C3N-01998 PDA Methylation_Array tissue_normal CPT0138990006 203561450018_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 547adec6-7c3a-43ec-b991-c31e13e86281 aee30ec05cf52f2d118f2d1caa983fb2 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.MethArray.Red.T C3N-01998 PDA Methylation_Array tumor CPT0139000010 203219650169_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 5ed8b879-ddf9-4f31-8ac2-21c1c49adc54 22ba7e053946f7fcc7e61d040e6128fd {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.miRNA-Seq.A.hg38 C3N-01998 PDA miRNA-Seq tissue_normal CPT0138990009 02356a70-ccea-42e5-9607-33e049aa6bcf_mirnaseq_gdc_realn.bam 263247250 BAM harmonized CPTAC3 514a113a-e383-47ab-8437-eafe607de9a0 904754a7c744cb1fcb9be7bb07bd4083 {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.miRNA-Seq.S20_L001_R1.A C3N-01998 PDA miRNA-Seq tissue_normal CPT0138990009 181108_UNC31-K00269_0162_AH255GBBXY_TATAAT_S20_L001_R1_001.unaln.bam 238427106 BAM S20_L001_R1 submitted_unaligned CPTAC3 b65887d0-4102-4689-835b-d85e0fb2f08d ec0bd4d4f35fb6309700a9efb84c8711 {"aliquot_tag": "ALQ_e11f8917", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.miRNA-Seq.S9_L001_R1.T C3N-01998 PDA miRNA-Seq tumor CPT0139000007 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 174250403 BAM S9_L001_R1 submitted_unaligned CPTAC3 f50de58f-b9a0-4f61-9970-e0a4c842cc80 cc2c550008ea31392a485c724df6c69d {"aliquot_tag": "ALQ_8acf9c1d", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.miRNA-Seq.T.hg38 C3N-01998 PDA miRNA-Seq tumor CPT0139000007 b1ba44d4-0c64-46bb-8b32-fd5040ef4f9d_mirnaseq_gdc_realn.bam 192094303 BAM harmonized CPTAC3 3422b968-70b9-4f01-8ef4-09a15a01b1a9 03841e39aa19483769b89980149faf7b {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.RNA-Seq.chimeric.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.chimeric.gdc_realn.bam 65467010 BAM chimeric harmonized CPTAC3 51669134-27bd-416b-b366-8c9b1e9e0e9e 7468feb0555fbe0490e0d1fae3a73371 {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.RNA-Seq.chimeric.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.chimeric.gdc_realn.bam 51019455 BAM chimeric harmonized CPTAC3 1f4bd9be-f7a6-478e-9712-638685bb6e13 45708f595856777771d87710ae1aa2ac {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.RNA-Seq.genomic.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.genomic.gdc_realn.bam 8377515544 BAM genomic harmonized CPTAC3 9e197a28-a818-42ca-85a5-44f25cda2b31 7106fe12e6ed3855fe39c6fb6181452b {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.RNA-Seq.genomic.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.genomic.gdc_realn.bam 8616965326 BAM genomic harmonized CPTAC3 783f6a9a-45d1-4e11-833f-77ec22cc54a9 0eb83df046f393f1b37f9d531fc6e093 {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.RNA-Seq.S13_L004_R1.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 3590086088 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 86882593-3b6f-4a79-af88-24a828c877a9 cb09c71ab525fc80712d5a5ef905d80d {"aliquot_tag": "ALQ_e11f8917", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.RNA-Seq.S13_L004_R2.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4051862046 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 71c59940-7c95-484e-b602-535c759dc5aa c4fc725ea5575e5f12be43e0af38d3d9 {"aliquot_tag": "ALQ_e11f8917", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.RNA-Seq.S3_L007_R1.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R1_001.fastq.gz 3750856780 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 d1e65a39-cf9b-4325-b009-467c2a0764db 336bef345f6405f22d6a86ff82b78e0e {"aliquot_tag": "ALQ_8acf9c1d", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.RNA-Seq.S3_L007_R2.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R2_001.fastq.gz 4193596017 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 509ab320-ebd9-47c5-9b16-df56783528ff ba1bb873efb210207f2bf1c03d342be3 {"aliquot_tag": "ALQ_8acf9c1d", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.RNA-Seq.transcriptome.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.transcriptome.gdc_realn.bam 10253991590 BAM transcriptome harmonized CPTAC3 9ccc9971-edf6-4d30-96a6-6a8a87281b5d b136f065cc8850331175160909aa04fb {"aliquot_tag": "ALQ_e11f8917", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.RNA-Seq.transcriptome.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.transcriptome.gdc_realn.bam 11220259980 BAM transcriptome harmonized CPTAC3 d484bd6d-488c-47b7-9dab-115af95ba638 d8ed1b3d88ca139ae62463f4b6f7f5cb {"aliquot_tag": "ALQ_8acf9c1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WGS.A C3N-01998 PDA WGS tissue_normal CPT0138990006 CPT0138990006.WholeGenome.RP-1303.bam 64994527820 BAM submitted_aligned CPTAC3 4e574a51-05a5-4942-b116-a8d01cdabfd0 dec62d179c980690e7e224c02db79002 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.WGS.A.hg38 C3N-01998 PDA WGS tissue_normal CPT0138990006 fd6d58be-dde5-48a6-bd15-4fd540911042_wgs_gdc_realn.bam 94156997182 BAM harmonized CPTAC3 f39f31d3-1b6d-4f9f-b70a-2741cdd0af3c 15e31231f8876f5df25cc0801bbb75dc {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.WGS.N C3N-01998 PDA WGS blood_normal CPT0139020002 CPT0139020002.WholeGenome.RP-1303.bam 62766706166 BAM submitted_aligned CPTAC3 7147bc41-9394-472c-bac3-1c5591b1c78f 27793ca81adbfb7e68a87996054e1183 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01998.WGS.N.hg38 C3N-01998 PDA WGS blood_normal CPT0139020002 55b09b6d-156e-41c5-89a3-dcf2239933d7_wgs_gdc_realn.bam 90810803383 BAM harmonized CPTAC3 6a15a73f-627b-40ef-bf2e-86d9b7ee92c4 011b07a71e4927f0e746d5bb01694080 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01998.WGS.T C3N-01998 PDA WGS tumor CPT0139000010_1 CPT0139000010_1.WholeGenome.RP-1303.bam 127567042549 BAM submitted_aligned CPTAC3 ca045655-4a9d-4c00-952b-f7b0a7922a7f e08158ea4dec594feaa013ba51a8a129 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WGS.T C3N-01998 PDA WGS tumor CPT0139000010 CPT0139000010.WholeGenome.RP-1303.bam 72098098196 BAM submitted_aligned CPTAC3 fdec9c5e-3808-4e3b-91aa-fc42a80fc638 d03797465c3bb4881e892152f5705fb3 {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WGS.T.hg38 C3N-01998 PDA WGS tumor CPT0139000010_1 1a805149-0df5-4531-9563-71e4c703bcdc_wgs_gdc_realn.bam 184217658913 BAM harmonized CPTAC3 0d272186-8a99-438f-9e1e-debefc5479d5 d5e466280de160d7df130515fb0e5911 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WGS.T.hg38 C3N-01998 PDA WGS tumor CPT0139000010 9e8bf09d-6c3c-41f6-ada0-0255af5e514e_wgs_gdc_realn.bam 104942945419 BAM harmonized CPTAC3 caa67a4e-3de5-40ff-9f7a-b3148e24378e c5b0879e077aaf97ea6b93cc5e7c16ec {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WXS.A C3N-01998 PDA WXS tissue_normal CPT0138990006 CPT0138990006.WholeExome.RP-1303.bam 23974944373 BAM submitted_aligned CPTAC3 cb40ea76-8e56-4ccd-a6bd-7e2450e99141 10608b9983fc7c417d414d624761347c {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.WXS.A.hg38 C3N-01998 PDA WXS tissue_normal CPT0138990006 fd6d58be-dde5-48a6-bd15-4fd540911042_wxs_gdc_realn.bam 33715823903 BAM harmonized CPTAC3 c2646db1-eff9-4690-aaaa-76a6405cae58 b1315cd3f8e3d2901f6c01b64bf20e77 {"aliquot_tag": "ALQ_71a09486", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01998.WXS.N C3N-01998 PDA WXS blood_normal CPT0139020002 CPT0139020002.WholeExome.RP-1303.bam 53783321069 BAM submitted_aligned CPTAC3 102d24a0-43ae-4162-92e6-01ebf16c9809 1537e678304a9e4ef87f08559ccea640 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01998.WXS.N.hg38 C3N-01998 PDA WXS blood_normal CPT0139020002 55b09b6d-156e-41c5-89a3-dcf2239933d7_wxs_gdc_realn.bam 72454088432 BAM harmonized CPTAC3 b1d90016-cc6d-439e-be14-55f718270eab 597abfa2179c079f0663b5055db2ec78 {"aliquot_tag": "ALQ_80653bf2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-01998.WXS.T C3N-01998 PDA WXS tumor CPT0139000010_1 CPT0139000010_1.WholeExome.RP-1303.bam 58563426311 BAM submitted_aligned CPTAC3 0c4e0dc2-b35e-4088-af32-4e807b79985a 4bbcae47f084260200f7cfec796e0763 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WXS.T C3N-01998 PDA WXS tumor CPT0139000010 CPT0139000010.WholeExome.RP-1303.bam 31307570392 BAM submitted_aligned CPTAC3 7eb5a91c-1dfe-446b-ac74-8e8abf68bb2f 33af94bec9330cc1f1455ffc5f5aa1ab {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WXS.T.hg38 C3N-01998 PDA WXS tumor CPT0139000010_1 1a805149-0df5-4531-9563-71e4c703bcdc_wxs_gdc_realn.bam 79902175680 BAM harmonized CPTAC3 60513f97-926b-4963-bae7-8c80e46a2a8c 122215b30d30ff34ee4ea4c485bedfc6 {"aliquot_tag": "ALQ_96021b02", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01998.WXS.T.hg38 C3N-01998 PDA WXS tumor CPT0139000010 9e8bf09d-6c3c-41f6-ada0-0255af5e514e_wxs_gdc_realn.bam 41895236041 BAM harmonized CPTAC3 f8867dab-b5a9-40a9-a118-7e22576f1833 216535481874426d0c22020c70a48e99 {"aliquot_tag": "ALQ_db038ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.MethArray.Green.A C3N-02000 LUAD Methylation_Array tissue_normal CPT0109700009 203027390105_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e4def344-0cf4-4b3d-856f-b64420c68737 2f92c222fe2973a19affa9e750ca9ba0 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.MethArray.Green.T C3N-02000 LUAD Methylation_Array tumor CPT0109680010 203028200093_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ea7c884e-09ef-474f-adac-efa23116965a a8be3b96d2da7552a3a0b87016ca9915 {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.MethArray.Red.A C3N-02000 LUAD Methylation_Array tissue_normal CPT0109700009 203027390105_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 c2c76996-26d0-4bf2-9a51-8e40e070fa14 d1d0ee4a2254ae9bb90e2d36b6bfd0d7 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.MethArray.Red.T C3N-02000 LUAD Methylation_Array tumor CPT0109680010 203028200093_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 b86fb18e-921f-47df-a815-17a482821d0e 4216b328ffc45ddf044a6ca2e1039536 {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.miRNA-Seq.A.hg38 C3N-02000 LUAD miRNA-Seq tissue_normal CPT0109700006 1fc26065-2a63-478c-9fbb-9e608be23b90_mirnaseq_gdc_realn.bam 223362644 BAM harmonized CPTAC3 8af9f274-343c-457b-bce8-7647deb889f7 70b4c97b94f5ffb3faf6c21623d9dfd2 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.miRNA-Seq.S27_L004_R1.T C3N-02000 LUAD miRNA-Seq tumor CPT0109680007 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L004_R1_001.unaln.bam 245348159 BAM S27_L004_R1 submitted_unaligned CPTAC3 f5327c79-13f0-4fa1-86f8-9c1f22e33340 526db497dc1d6b886be2b759d554de1d {"aliquot_tag": "ALQ_e2693322", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.miRNA-Seq.S46_L004_R1.A C3N-02000 LUAD miRNA-Seq tissue_normal CPT0109700006 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L004_R1_001.unaln.bam 195250696 BAM S46_L004_R1 submitted_unaligned CPTAC3 4ff9a4b3-7a46-4527-87c0-93f88f4dadcd 6d2a7152a85c401407558b4d7d64cc34 {"aliquot_tag": "ALQ_6e429bd0", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.miRNA-Seq.T.hg38 C3N-02000 LUAD miRNA-Seq tumor CPT0109680007 9ca4f23f-8523-42d9-b93a-1e0c091796d1_mirnaseq_gdc_realn.bam 269593261 BAM harmonized CPTAC3 3f574fda-4e4a-47c9-931b-3112252cb6f5 0d2b8437e5cb0e08fc69d52ca372e142 {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.RNA-Seq.chimeric.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.chimeric.gdc_realn.bam 89346826 BAM chimeric harmonized CPTAC3 88752550-43aa-4b12-8a01-00afd6632bd1 771f2ae4d6a3fcd74aebf5e431d68c95 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.RNA-Seq.chimeric.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.chimeric.gdc_realn.bam 114988995 BAM chimeric harmonized CPTAC3 d5f857bb-17c0-4609-8555-872340923125 a5f404cd2fed43500a5705889e4e254c {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.RNA-Seq.genomic.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.genomic.gdc_realn.bam 8529201356 BAM genomic harmonized CPTAC3 90201214-4975-4d28-9383-a8fe7d6b03d2 bcb3a7a8e6abbf29baa0e33136d03364 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.RNA-Seq.genomic.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.genomic.gdc_realn.bam 8039236624 BAM genomic harmonized CPTAC3 1c2e8c8f-f005-4b2b-be04-1593103cc521 1bcd8a58ce08069431ce1995845218c3 {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.RNA-Seq.S11_L003_R1.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3992029558 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 c37e4ac2-6ec2-460f-b4da-7375234d3b7c 3be21ed43d687f56c4c585e39fc9fc81 {"aliquot_tag": "ALQ_6e429bd0", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.RNA-Seq.S11_L003_R2.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4357840440 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 7ba754f5-d88a-4e31-9093-866c2de14259 28bb9d5f4d0461fad336f2681430d2b6 {"aliquot_tag": "ALQ_6e429bd0", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.RNA-Seq.S24_L008_R1.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R1_001.fastq.gz 3640296272 FASTQ S24_L008_R1 submitted_unaligned CPTAC3 e6350e07-5dfe-4e0a-bbe3-22d4d4beeec2 fb420b7574240cac064e0e91c7e41688 {"aliquot_tag": "ALQ_e2693322", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.RNA-Seq.S24_L008_R2.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R2_001.fastq.gz 4074763701 FASTQ S24_L008_R2 submitted_unaligned CPTAC3 580c4dd0-4763-4cbf-9905-fcf1ed0bcd5e f02d2c4cfc71b180e5252365044fe9f6 {"aliquot_tag": "ALQ_e2693322", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.RNA-Seq.transcriptome.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.transcriptome.gdc_realn.bam 10236227622 BAM transcriptome harmonized CPTAC3 91b785b9-4222-4391-978c-5a15445b1fdb f6285b331c714d23c57d98b8c7fb3477 {"aliquot_tag": "ALQ_6e429bd0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.RNA-Seq.transcriptome.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.transcriptome.gdc_realn.bam 9403704891 BAM transcriptome harmonized CPTAC3 ad2b6083-5162-4b0d-8d08-058fcff35707 d533a5e962310e22946c725648fb3032 {"aliquot_tag": "ALQ_e2693322", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.WGS.A C3N-02000 LUAD WGS tissue_normal CPT0109700009 CPT0109700009.WholeGenome.RP-1303.bam 59122561060 BAM submitted_aligned CPTAC3 689d3c58-1f3a-4831-9314-7b4c1bb3ea2b 3d5d9ab75a83ea6d09753a7a88bf2409 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.WGS.A.hg38 C3N-02000 LUAD WGS tissue_normal CPT0109700009 e51fcd20-6fde-467e-8a41-07aefd567779_wgs_gdc_realn.bam 88026359100 BAM harmonized CPTAC3 e03c81fb-52e0-4116-ad29-62d77e52ac88 e9c312939caec04e45f6dbc567facdd6 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.WGS.N C3N-02000 LUAD WGS blood_normal CPT0139090002 CPT0139090002.WholeGenome.RP-1303.bam 59713363020 BAM submitted_aligned CPTAC3 9f9c8eef-1418-4340-aba0-3962203d7407 6f594b38c844ada2e4265d395d591305 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02000.WGS.N.hg38 C3N-02000 LUAD WGS blood_normal CPT0139090002 2e314885-1454-4783-a831-75870cf75983_wgs_gdc_realn.bam 86461784632 BAM harmonized CPTAC3 bf014c48-3581-4a84-8722-b035e7a9d738 31b6024d602a5c81000b59b4d1eabb29 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02000.WGS.T C3N-02000 LUAD WGS tumor CPT0109680010 CPT0109680010.WholeGenome.RP-1303.bam 69712117908 BAM submitted_aligned CPTAC3 8fa8d835-3da1-49c0-afb7-a8e63f3a9d39 356748827315745c334deb9103312204 {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.WGS.T.hg38 C3N-02000 LUAD WGS tumor CPT0109680010 1343972c-60e6-47e7-b70e-d19bd6d3f653_wgs_gdc_realn.bam 103977182366 BAM harmonized CPTAC3 b3175349-2e99-492c-80a8-8db100ea1653 569f2b34b26521be732c485cdcad961c {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.WXS.A C3N-02000 LUAD WXS tissue_normal CPT0109700009 CPT0109700009.WholeExome.RP-1303.bam 33287086358 BAM submitted_aligned CPTAC3 00cebc80-2109-451c-9a6f-2b1caef90ce5 bd73eecbd3641b62f8d69f466eb75be7 {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.WXS.A.hg38 C3N-02000 LUAD WXS tissue_normal CPT0109700009 e51fcd20-6fde-467e-8a41-07aefd567779_wxs_gdc_realn.bam 44937991320 BAM harmonized CPTAC3 802eca50-b209-47f1-a139-d0dd7abb3720 f13c5ffc83402791931e7a9f1867001b {"aliquot_tag": "ALQ_fefd8641", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02000.WXS.N C3N-02000 LUAD WXS blood_normal CPT0139090002 CPT0139090002.WholeExome.RP-1303.bam 24521308132 BAM submitted_aligned CPTAC3 42971285-f3ae-4a3c-9e98-1432c1f2ba99 dec2958f557c74817c03252a5260ed69 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02000.WXS.N.hg38 C3N-02000 LUAD WXS blood_normal CPT0139090002 2e314885-1454-4783-a831-75870cf75983_wxs_gdc_realn.bam 34112917365 BAM harmonized CPTAC3 295550ef-b363-468c-9df0-91c6b8cb9fdd 35adf590fa97ca11b44cc7f9c5f083d5 {"aliquot_tag": "ALQ_f7b50ae3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02000.WXS.T C3N-02000 LUAD WXS tumor CPT0109680010 CPT0109680010.WholeExome.RP-1303.bam 21814589957 BAM submitted_aligned CPTAC3 b4a890f4-f116-4026-b70e-730bd90308a3 acb3075a49d36d8c0041ee0da3901e1d {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02000.WXS.T.hg38 C3N-02000 LUAD WXS tumor CPT0109680010 1343972c-60e6-47e7-b70e-d19bd6d3f653_wxs_gdc_realn.bam 29360561709 BAM harmonized CPTAC3 30fa5120-cf28-4153-8d7c-e57b00adcb9f e02d41d71a2cc313ec4d91d9a502b70d {"aliquot_tag": "ALQ_651697c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.MethArray.Green.A C3N-02002 LUAD Methylation_Array tissue_normal CPT0109710009 203219670217_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 eb5f8e38-38a1-4f1b-904f-52f5fbb82c38 c6c1cc6e04bba665592a8aebfe153ac4 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.MethArray.Green.T C3N-02002 LUAD Methylation_Array tumor CPT0109720010 203028200034_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2a03120a-2f54-4622-bb3a-6e281a903751 8cd80a5c841fae088d72824bed490aa7 {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.MethArray.Red.A C3N-02002 LUAD Methylation_Array tissue_normal CPT0109710009 203219670217_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 e32d6724-d61b-45a6-9500-432143c99810 9378bd14784e9c7fb9d76761882badc4 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.MethArray.Red.T C3N-02002 LUAD Methylation_Array tumor CPT0109720010 203028200034_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 9eb9086e-da0b-4ab8-819f-9fbb3a24f5ae 184b6cb6f411b1ee56298adf2785d354 {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.miRNA-Seq.A.hg38 C3N-02002 LUAD miRNA-Seq tissue_normal CPT0109710006 8ec91631-801d-489f-9644-2de493735af3_mirnaseq_gdc_realn.bam 273801604 BAM harmonized CPTAC3 1eeb758e-910e-4ad1-96a3-19b49a2a7df0 ccd7c63d0374fe19ef6a01744c1348ce {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.miRNA-Seq.S28_L004_R1.T C3N-02002 LUAD miRNA-Seq tumor CPT0109720007 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L004_R1_001.unaln.bam 244138607 BAM S28_L004_R1 submitted_unaligned CPTAC3 4a8f85ad-f889-431c-9567-1d3b8584daa1 8dce02e0e26bcafe1767e186d9472670 {"aliquot_tag": "ALQ_6385f826", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.miRNA-Seq.S47_L004_R1.A C3N-02002 LUAD miRNA-Seq tissue_normal CPT0109710006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L004_R1_001.unaln.bam 243097231 BAM S47_L004_R1 submitted_unaligned CPTAC3 cd04ce2f-4eb8-4554-9a33-eb464a8d2f50 6ffacde34d5dd590eeab6fb3ea32b5db {"aliquot_tag": "ALQ_5322b260", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.miRNA-Seq.T.hg38 C3N-02002 LUAD miRNA-Seq tumor CPT0109720007 2c782365-b190-44b9-ba05-8ee554837849_mirnaseq_gdc_realn.bam 265867571 BAM harmonized CPTAC3 c2bd3557-e1d9-443e-894c-0e640ab5cd95 6ff0f3fbec24ebf1ae3daab30b338eac {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.RNA-Seq.chimeric.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.chimeric.gdc_realn.bam 91023579 BAM chimeric harmonized CPTAC3 e8b04cf0-42e0-4cc5-b609-1f3344814491 25e6a8cb284d95aca6c0cd3f3127df2a {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.RNA-Seq.chimeric.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.chimeric.gdc_realn.bam 82932535 BAM chimeric harmonized CPTAC3 b30e112d-2e24-4955-b4cb-d2aae1aecdcf 6a5554f71efbb8881c8a5942df944e55 {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.RNA-Seq.genomic.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.genomic.gdc_realn.bam 9285899422 BAM genomic harmonized CPTAC3 67bc95a4-02e8-4d2d-bb4e-d9bc52a83a1f 6937c5feeb3f06bf2fd13f10f85505bd {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.RNA-Seq.genomic.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.genomic.gdc_realn.bam 8686356779 BAM genomic harmonized CPTAC3 5e831623-21a1-4c46-9930-05ebe168799b 6b6c125e27939783c1f72907528a5b29 {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.RNA-Seq.S10_L003_R1.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4370224894 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 5be0e581-3faf-40f7-a539-5c6aca6d2953 35ab9d90ed1c5bf37e81d97cb247280b {"aliquot_tag": "ALQ_5322b260", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.RNA-Seq.S10_L003_R2.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4726117269 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 d94126c2-139a-4f55-8d9f-4a906574c49a 86c9f52d3bd8a36511ee9f47ef4946e0 {"aliquot_tag": "ALQ_5322b260", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.RNA-Seq.S8_L008_R1.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4141056282 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 a49f1bb4-2dd1-4b43-ae04-dadfb5ba75bd 413047aded036e15ef4094e49f6f1cd3 {"aliquot_tag": "ALQ_6385f826", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.RNA-Seq.S8_L008_R2.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4509133766 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 7cf1758c-8452-4301-b81b-e42e6fbaa68f 42529f895aaa99892e07a5f46b88ff0b {"aliquot_tag": "ALQ_6385f826", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.RNA-Seq.transcriptome.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.transcriptome.gdc_realn.bam 11278340213 BAM transcriptome harmonized CPTAC3 aa752f05-6d97-4399-b366-b48fb9029c73 0b475b3c9529c369f4a51edb285e9e18 {"aliquot_tag": "ALQ_5322b260", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.RNA-Seq.transcriptome.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.transcriptome.gdc_realn.bam 10727001137 BAM transcriptome harmonized CPTAC3 c3ac46d6-f81e-4b2f-a8bd-d37717ca008c c7a01641cb74420cfb6de0d8e17c18c4 {"aliquot_tag": "ALQ_6385f826", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.WGS.A C3N-02002 LUAD WGS tissue_normal CPT0109710009 CPT0109710009.WholeGenome.RP-1303.bam 58334265541 BAM submitted_aligned CPTAC3 63b06dc1-b736-4a76-981c-4affb7915d9d b308e0cce5d0807c40eaf4ad094495e7 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.WGS.A.hg38 C3N-02002 LUAD WGS tissue_normal CPT0109710009 ee0f0256-ed6f-447e-9ad8-1060fb36e161_wgs_gdc_realn.bam 85432613028 BAM harmonized CPTAC3 072f98ce-93e7-449a-ba6c-625e57283f4b ad0ec4ee26826fcdfd267a3e6535cea4 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.WGS.N C3N-02002 LUAD WGS blood_normal CPT0139130002 CPT0139130002.WholeGenome.RP-1303.bam 58900139209 BAM submitted_aligned CPTAC3 a39f3064-d524-4a5f-a68d-f2d451194f91 b407089b76da8055cbddbf14ae1a22a5 {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02002.WGS.N.hg38 C3N-02002 LUAD WGS blood_normal CPT0139130002 202db50a-4134-448c-9481-ced3fd4d4dc2_wgs_gdc_realn.bam 85547622583 BAM harmonized CPTAC3 471e70c6-51e8-4100-a63b-63a3f6a5a678 6ceadc4236987e52617d57ede9283975 {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02002.WGS.T C3N-02002 LUAD WGS tumor CPT0109720010 CPT0109720010.WholeGenome.RP-1303.bam 63042057812 BAM submitted_aligned CPTAC3 d802fffd-7af0-4431-83cd-0bb162dca3fb 8488a9f40344d72889624fa41c7a5ade {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.WGS.T.hg38 C3N-02002 LUAD WGS tumor CPT0109720010 1abf55ca-df9a-4ac4-8c33-510b39936273_wgs_gdc_realn.bam 91748325617 BAM harmonized CPTAC3 f55aa86a-653a-4e17-a43e-6120f929023c 870f9cf758fcf514b1a95ad4fb697a7a {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.WXS.A C3N-02002 LUAD WXS tissue_normal CPT0109710009 CPT0109710009.WholeExome.RP-1303.bam 25498345186 BAM submitted_aligned CPTAC3 546bd714-d5a7-4987-8dbf-10ecdfabde7b 78eeaed1fd9ea7638066296b174bbe61 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.WXS.A.hg38 C3N-02002 LUAD WXS tissue_normal CPT0109710009 ee0f0256-ed6f-447e-9ad8-1060fb36e161_wxs_gdc_realn.bam 35117796713 BAM harmonized CPTAC3 437e9d6f-dc7d-4bcf-98fa-3419777978ce d48ea3b13ef09b49ee20869a308ec006 {"aliquot_tag": "ALQ_c39daff1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02002.WXS.N C3N-02002 LUAD WXS blood_normal CPT0139130002 CPT0139130002.WholeExome.RP-1303.bam 33059402495 BAM submitted_aligned CPTAC3 bd7b742f-a924-49cd-8e26-ec3a0bb27e8e 701d6c172ab190f155d9edb30a0777f5 {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02002.WXS.N.hg38 C3N-02002 LUAD WXS blood_normal CPT0139130002 202db50a-4134-448c-9481-ced3fd4d4dc2_wxs_gdc_realn.bam 43971341873 BAM harmonized CPTAC3 006e39b0-96ca-4339-a510-96b6005eeae8 0263465913603b7c61f2518cd29e12ad {"aliquot_tag": "ALQ_7659c1e7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02002.WXS.T C3N-02002 LUAD WXS tumor CPT0109720010 CPT0109720010.WholeExome.RP-1303.bam 22740755323 BAM submitted_aligned CPTAC3 fb134f39-c84a-40f0-809b-a0f9524d8da9 c446602c68cddabc34f8cf54a85d128c {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02002.WXS.T.hg38 C3N-02002 LUAD WXS tumor CPT0109720010 1abf55ca-df9a-4ac4-8c33-510b39936273_wxs_gdc_realn.bam 30770328088 BAM harmonized CPTAC3 8c10fc2f-eeb0-44fb-b18f-e42c4f022697 5aeedf36072ac8bd0804102caa8067c9 {"aliquot_tag": "ALQ_e4fa5cc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.MethArray.Green.A C3N-02003 LUAD Methylation_Array tissue_normal CPT0109760009 203219650165_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 784adb6d-d9c9-4c15-ab13-570a022f98cb ec13980cbc11746d080fc1cc57a4b2c3 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.MethArray.Green.T C3N-02003 LUAD Methylation_Array tumor CPT0109740010 203028200023_R02C01_Grn.idat 13676232 IDAT Green NA CPTAC3 e2f86682-0a0d-4542-a688-592c308f4888 fe77a8527053541c2a74b56953cfb8c5 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.MethArray.Red.A C3N-02003 LUAD Methylation_Array tissue_normal CPT0109760009 203219650165_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 c081e003-887c-48c6-a3b6-9ea34addeefe 322939ead62a0fb3949f57fc35de5881 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.MethArray.Red.T C3N-02003 LUAD Methylation_Array tumor CPT0109740010 203028200023_R02C01_Red.idat 13676232 IDAT Red NA CPTAC3 1cb26207-401e-4e91-88e3-3e4745a9017b d5380602cc782b1f02e1c02d63214c1f {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.miRNA-Seq.A.hg38 C3N-02003 LUAD miRNA-Seq tissue_normal CPT0109760006 82a6fd72-de09-497f-a8aa-930c01838d2c_mirnaseq_gdc_realn.bam 233882523 BAM harmonized CPTAC3 6d730713-989a-4b88-811c-b633de485f3e 117007fa574e8409adec8982af30bb7b {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.miRNA-Seq.S29_L004_R1.T C3N-02003 LUAD miRNA-Seq tumor CPT0109740007 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L004_R1_001.unaln.bam 182925682 BAM S29_L004_R1 submitted_unaligned CPTAC3 47ed4daf-4042-49ee-a2c7-80a43f1bdcb0 57f0c3de39431bde02d9fed4d8b59ba1 {"aliquot_tag": "ALQ_ecc50d86", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.miRNA-Seq.S48_L004_R1.A C3N-02003 LUAD miRNA-Seq tissue_normal CPT0109760006 181108_UNC31-K00269_0162_AH255GBBXY_GGTAGC_S48_L004_R1_001.unaln.bam 207987594 BAM S48_L004_R1 submitted_unaligned CPTAC3 c28c49f9-fc78-405f-a37d-c1fdf5f91e42 66604c177c7e86d011a7afcf371140b8 {"aliquot_tag": "ALQ_e1026e70", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.miRNA-Seq.T.hg38 C3N-02003 LUAD miRNA-Seq tumor CPT0109740007 ef78f3d1-265d-4e1f-aca3-160f664f7d23_mirnaseq_gdc_realn.bam 209558794 BAM harmonized CPTAC3 98255690-02a8-4c2f-8ef2-70a90364e5c7 07817f05a0148e3776a7e42f8f0d3465 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.RNA-Seq.chimeric.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.chimeric.gdc_realn.bam 62028412 BAM chimeric harmonized CPTAC3 2f3cab0e-98d0-48e4-9ae4-e8245f200c0a eba6867c1084f0855ea9eca663af6ea7 {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.RNA-Seq.chimeric.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.chimeric.gdc_realn.bam 93180467 BAM chimeric harmonized CPTAC3 307c5935-6c13-4dc9-9ed7-ef87f9a5dc2c 964a4247752bcdb31e3d3f66fd6baf52 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.RNA-Seq.genomic.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.genomic.gdc_realn.bam 8297119392 BAM genomic harmonized CPTAC3 8e9fa53c-4a2d-4d98-9eee-c9787f3c0204 64c9ba77fc1de2290e63cd3c9d889eac {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.RNA-Seq.genomic.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.genomic.gdc_realn.bam 6876537011 BAM genomic harmonized CPTAC3 1ba44dd6-7052-4c99-a08a-1a33471f4e5c 4909aeb0e775e84bcbf0097295329c76 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.RNA-Seq.S12_L003_R1.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3882852681 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 96a22aec-6a15-4edb-9bf7-027ac1e746e4 a4b114ee388f48ce375935e7c6acd57d {"aliquot_tag": "ALQ_e1026e70", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.RNA-Seq.S12_L003_R2.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4216757340 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 c99083e8-6f5e-4516-999b-0236384c53e9 4024ab0d77240f0d8f8fe491dcbf5a03 {"aliquot_tag": "ALQ_e1026e70", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.RNA-Seq.S7_L007_R1.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3160557380 FASTQ S7_L007_R1 submitted_unaligned CPTAC3 ea62e60b-7213-4039-91e0-0e9c733117f2 4a54209ef1c8f72377582193d788af53 {"aliquot_tag": "ALQ_ecc50d86", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.RNA-Seq.S7_L007_R2.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3493250359 FASTQ S7_L007_R2 submitted_unaligned CPTAC3 9c13c469-3b06-4c2e-af20-2cbdcab055ed c2249ab3dff77fcc1019eb21f6b11b51 {"aliquot_tag": "ALQ_ecc50d86", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.RNA-Seq.transcriptome.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.transcriptome.gdc_realn.bam 9845994301 BAM transcriptome harmonized CPTAC3 21f168eb-8c41-430f-9e9f-64f9b10ef5db 5d72b483da9d05b0c89741f16e951af0 {"aliquot_tag": "ALQ_e1026e70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.RNA-Seq.transcriptome.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.transcriptome.gdc_realn.bam 10084602570 BAM transcriptome harmonized CPTAC3 7b575fac-5940-4c41-b259-8f99a05267ae 09db01c829cb812d92b37d2808102963 {"aliquot_tag": "ALQ_ecc50d86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.WGS.A C3N-02003 LUAD WGS tissue_normal CPT0109760009 CPT0109760009.WholeGenome.RP-1303.bam 61776001726 BAM submitted_aligned CPTAC3 92bbd25f-8487-4c91-8e7c-38d0614fbbcc 1cf99139a950e3233a7ba6c2884c0412 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.WGS.A.hg38 C3N-02003 LUAD WGS tissue_normal CPT0109760009 31e6ec45-f44d-4d31-9b84-4b06716a284c_wgs_gdc_realn.bam 90261056590 BAM harmonized CPTAC3 09bf63f6-1f78-4842-8ccc-621f71feca5b 907cd2ae1654f7be3fdadcabc6412b96 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.WGS.N C3N-02003 LUAD WGS blood_normal CPT0139170002 CPT0139170002.WholeGenome.RP-1303.bam 66574103107 BAM submitted_aligned CPTAC3 1e76d694-e8d0-4b2f-a99c-88b097072018 159c02207ecc08341c8d14a5e33bf99c {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02003.WGS.N.hg38 C3N-02003 LUAD WGS blood_normal CPT0139170002 7ca71ce5-b234-4709-8edc-669943e1e2dd_wgs_gdc_realn.bam 97397004399 BAM harmonized CPTAC3 6e5f732a-d376-4bb1-a4b1-6c958e6bcb1a 033d2a3358ed3dcd47e4542ba349cddb {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02003.WGS.T C3N-02003 LUAD WGS tumor CPT0109740010 CPT0109740010.WholeGenome.RP-1303.bam 58777404004 BAM submitted_aligned CPTAC3 ef43177b-3082-478d-b5de-8be5b03ee694 cc410a916c2bfbb2ce4e24a1206195df {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.WGS.T.hg38 C3N-02003 LUAD WGS tumor CPT0109740010 ef408498-3384-4707-9dc5-972baec87b00_wgs_gdc_realn.bam 86045310444 BAM harmonized CPTAC3 16fb6379-c03e-4861-a991-b6673e10d276 86e0181f03ded2ed6f6176b6bc626e19 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.WXS.A C3N-02003 LUAD WXS tissue_normal CPT0109760009 CPT0109760009.WholeExome.RP-1303.bam 23802560221 BAM submitted_aligned CPTAC3 a75c1c45-aca1-4d0b-a747-f811cfe4eaf2 45e4e9d97af0abf6bc090062608a8c8e {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.WXS.A.hg38 C3N-02003 LUAD WXS tissue_normal CPT0109760009 31e6ec45-f44d-4d31-9b84-4b06716a284c_wxs_gdc_realn.bam 32001263995 BAM harmonized CPTAC3 ab1ce893-3592-4958-b708-fabfa48af51c de0bca1a7db6c05be0b1b2d3c6598271 {"aliquot_tag": "ALQ_71bd73e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02003.WXS.N C3N-02003 LUAD WXS blood_normal CPT0139170002 CPT0139170002.WholeExome.RP-1303.bam 26062153859 BAM submitted_aligned CPTAC3 5ed60034-444c-4143-9ad9-6e690ac605e1 b0c69f9ab663d10e2921bbef27405f24 {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02003.WXS.N.hg38 C3N-02003 LUAD WXS blood_normal CPT0139170002 7ca71ce5-b234-4709-8edc-669943e1e2dd_wxs_gdc_realn.bam 34843220411 BAM harmonized CPTAC3 6c5a9ab5-1366-4be1-8e99-25ff33186bc2 51d7d24ceededc61c4d641d959e38497 {"aliquot_tag": "ALQ_83d96727", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02003.WXS.T C3N-02003 LUAD WXS tumor CPT0109740010 CPT0109740010.WholeExome.RP-1303.bam 26745838159 BAM submitted_aligned CPTAC3 78b5ee99-a2fb-4b29-a717-543cd332f195 50238a790aae023b7f80e7a4d207ef09 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02003.WXS.T.hg38 C3N-02003 LUAD WXS tumor CPT0109740010 ef408498-3384-4707-9dc5-972baec87b00_wxs_gdc_realn.bam 36401003171 BAM harmonized CPTAC3 1fb9c68e-3526-421c-bbd8-5a86ec741f6b 34ea626f34d1d03f8805b3833bb1cd40 {"aliquot_tag": "ALQ_6bbaa964", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.MethArray.Green.T C3N-02005 CCRCC Methylation_Array tumor CPT0109770007 203219720176_R02C01_Grn.idat 13676246 IDAT Green NA CPTAC3 74114460-7842-4c60-b58b-e635757da05e cfa49d1587ed126137278b3a0d757b97 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.MethArray.Red.T C3N-02005 CCRCC Methylation_Array tumor CPT0109770007 203219720176_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 2b31939a-afd6-49ad-a34a-5a79aafbd14f 0f04192addd8fbd0554fef0f81cb4eb0 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.miRNA-Seq.S6_L004_R1.T C3N-02005 CCRCC miRNA-Seq tumor CPT0109770010 190108_UNC31-K00269_0176_AHYGLVBBXX_GCCAAT_S6_L004_R1_001.unaln.bam 225738162 BAM S6_L004_R1 submitted_unaligned CPTAC3 c75bfd81-bcf7-40cb-9f1a-cbc38b9db2b0 7dccd6266ac20698df7df2bc68daa874 {"aliquot_tag": "ALQ_2c1ad3b4", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.miRNA-Seq.T.hg38 C3N-02005 CCRCC miRNA-Seq tumor CPT0109770010 858a87b4-ff68-449f-8096-608adf3643ce_mirnaseq_gdc_realn.bam 247935341 BAM harmonized CPTAC3 5b881acc-072a-49c6-8979-0cb30a818be1 f59e977903d18d50e4c1865f104dde22 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.RNA-Seq.chimeric.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.chimeric.gdc_realn.bam 59473518 BAM chimeric harmonized CPTAC3 d1061fd6-ad73-42c4-ace0-47ba4b79339c 2a4d4140c6ddd0b3a6da758e9f38bfc4 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.RNA-Seq.genomic.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.genomic.gdc_realn.bam 8986205506 BAM genomic harmonized CPTAC3 9a312a75-897b-4b35-88fb-1133d1e518b4 0d4b88855b008f59ed7ec5ccf78e1d49 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.RNA-Seq.S6_L002_R1.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4033270746 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 afde1752-f476-45e9-bcac-c37bf88cc5b5 908a8cd88f321b816dfab5406dadee27 {"aliquot_tag": "ALQ_2c1ad3b4", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.RNA-Seq.S6_L002_R2.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4465342500 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 eab3506f-acc0-4135-9683-7d8d8e9a3e14 71ae0683c286c3c7ad0f4a6fa6769ab2 {"aliquot_tag": "ALQ_2c1ad3b4", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.RNA-Seq.transcriptome.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.transcriptome.gdc_realn.bam 11478074710 BAM transcriptome harmonized CPTAC3 3084aa58-1891-483b-b0a9-395ad347e12b c125a7b83d8584190b3e961777f65063 {"aliquot_tag": "ALQ_2c1ad3b4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.WGS.N C3N-02005 CCRCC WGS blood_normal CPT0139310002 CPT0139310002.WholeGenome.RP-1303.bam 62515735075 BAM submitted_aligned CPTAC3 446e9795-a22a-45f6-acc8-21e79a2a534c 21bf8ce5ba38e313a8e4a179d0aaaae5 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02005.WGS.N.hg38 C3N-02005 CCRCC WGS blood_normal CPT0139310002 92eb0a8b-05b8-4e77-8c2f-3b3e09c26f8b_wgs_gdc_realn.bam 92542452110 BAM harmonized CPTAC3 9094a340-71d1-4c3d-b13f-ae706fa92ee9 ba9d8bfe12564402048b831f3ff51cf1 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02005.WGS.T C3N-02005 CCRCC WGS tumor CPT0109770007 CPT0109770007.WholeGenome.RP-1303.bam 64836795238 BAM submitted_aligned CPTAC3 83ec74e1-c75f-4f1f-b9fb-c871dc5eb269 b4eaa624d8248c5d60366fee8a94d541 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.WGS.T.hg38 C3N-02005 CCRCC WGS tumor CPT0109770007 c4222331-f983-46eb-af90-93cac70d9c6d_wgs_gdc_realn.bam 95463562995 BAM harmonized CPTAC3 de921a5d-c59c-4cd7-8467-45a0b616788a 96af7f7e54e8a8f9b25fd9a8afd08c29 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.WXS.N C3N-02005 CCRCC WXS blood_normal CPT0139310002 CPT0139310002.WholeExome.RP-1303.bam 31458264655 BAM submitted_aligned CPTAC3 8c55915d-a29a-4eb9-a78f-272bcfde444b 190b4759e176d496df8de59878e01640 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02005.WXS.N.hg38 C3N-02005 CCRCC WXS blood_normal CPT0139310002 92eb0a8b-05b8-4e77-8c2f-3b3e09c26f8b_wxs_gdc_realn.bam 43420619798 BAM harmonized CPTAC3 7564ae49-1759-443e-958d-c53de897a274 7c4d74d17c069c9981b293c55ed481d0 {"aliquot_tag": "ALQ_4151338c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02005.WXS.T C3N-02005 CCRCC WXS tumor CPT0109770007 CPT0109770007.WholeExome.RP-1303.bam 24497271441 BAM submitted_aligned CPTAC3 bbbd40f9-d5a2-4245-9410-7c53a0e5427b 5fdb1b878b23a296d56c87e0be1199ef {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02005.WXS.T.hg38 C3N-02005 CCRCC WXS tumor CPT0109770007 c4222331-f983-46eb-af90-93cac70d9c6d_wxs_gdc_realn.bam 33917101385 BAM harmonized CPTAC3 54485fd9-afbe-4f20-a76c-aefd965b0c5d 9d3f867450323ef330b743f399e81085 {"aliquot_tag": "ALQ_ab657756", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.MethArray.Green.T C3N-02010 PDA Methylation_Array tumor CPT0241500007 203561620079_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 faddeb2b-9649-45bc-836b-6f9cc7097c68 210ea041d3142bdf1c3c02fd86bd05cf {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.MethArray.Red.T C3N-02010 PDA Methylation_Array tumor CPT0241500007 203561620079_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 4510dded-4a1c-4708-9e3c-e67e26ef86f5 08e87f0869464e9e7b09c34ebbea3cff {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.miRNA-Seq.A.hg38 C3N-02010 PDA miRNA-Seq tissue_normal CPT0241510007 06f55666-c6cf-425e-9c1d-0ed980316a31_mirnaseq_gdc_realn.bam 273768593 BAM harmonized CPTAC3 1fc6f794-4faf-4d34-9747-8ae21cf3b2a6 1f1e284d75e351dffcb8a522158107f1 {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02010.miRNA-Seq.S30_L002_R1.A C3N-02010 PDA miRNA-Seq tissue_normal CPT0241510007 190813_UNC32-K00270_0196_AH5MCWBBXY_ATCACG_S30_L002_R1_001.unaln.bam 240304441 BAM S30_L002_R1 submitted_unaligned CPTAC3 d65705fb-c7a8-4735-b275-02a097dfd5a8 27d2ebcb3fa99b94b0fbfca4c0712d4b {"aliquot_tag": "ALQ_e7c55fa5", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02010.miRNA-Seq.S32_L005_R1.T C3N-02010 PDA miRNA-Seq tumor CPT0241500010 190712_UNC32-K00270_0192_BH7HL3BBXY_GATCAG_S32_L005_R1_001.unaln.bam 205258059 BAM S32_L005_R1 submitted_unaligned CPTAC3 c542f01c-2759-4665-9940-98e691098f42 02e688b56d0fc6b23a7101cb4d534411 {"aliquot_tag": "ALQ_5ddad2f7", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.miRNA-Seq.T.hg38 C3N-02010 PDA miRNA-Seq tumor CPT0241500010 08b29754-5e87-4a1d-845c-cb3c0d823cea_mirnaseq_gdc_realn.bam 229188098 BAM harmonized CPTAC3 b0905aa8-e3b2-4b26-be4a-b79cc66c7143 ea123fa6dc89c3491f655ed43c876d2a {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.RNA-Seq.chimeric.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.chimeric.gdc_realn.bam 33483472 BAM chimeric harmonized CPTAC3 54031f54-53a8-400e-8ba4-ac593ea4195d d60c139b9f7da1495535abda2bab72da {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02010.RNA-Seq.chimeric.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.chimeric.gdc_realn.bam 39480639 BAM chimeric harmonized CPTAC3 2b7c2d09-4215-4f89-a639-806e21898037 89416f33d300e6a4429a722a51e35d4c {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.RNA-Seq.genomic.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.genomic.gdc_realn.bam 7410446604 BAM genomic harmonized CPTAC3 a2c17e0a-a517-47e3-980a-d0775aca0217 d6254c766440516459948c0a48cf199f {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02010.RNA-Seq.genomic.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.genomic.gdc_realn.bam 8946340637 BAM genomic harmonized CPTAC3 74e09891-1587-4641-8d5d-6f465d88ed6d ebd28451da9667578b68f2f2db68add5 {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.RNA-Seq.S12_L003_R1.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R1_001.fastq.gz 3427102841 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 eeff2902-60e5-404d-9ea1-9d0d23ba346d 72a800ac3ea1efe38c778f1bc65102f7 {"aliquot_tag": "ALQ_e7c55fa5", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02010.RNA-Seq.S12_L003_R2.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R2_001.fastq.gz 3732783418 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 f6b5287d-66f9-4a72-a5d0-130ade6a0a0a 2ffdcf56badc8d39008d437227541317 {"aliquot_tag": "ALQ_e7c55fa5", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02010.RNA-Seq.S30_L008_R1.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R1_001.fastq.gz 4103338946 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 23ac9bde-8bfe-45e1-998f-eb3aa64bf690 fbd62b600eb3a04c89ad42342d7b92b7 {"aliquot_tag": "ALQ_5ddad2f7", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.RNA-Seq.S30_L008_R2.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R2_001.fastq.gz 4891018155 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 1de6db7e-1fa5-4209-bdf7-3579657ad57f cbca8eb1985217a49e89ca587e14780a {"aliquot_tag": "ALQ_5ddad2f7", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.RNA-Seq.transcriptome.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.transcriptome.gdc_realn.bam 8979305967 BAM transcriptome harmonized CPTAC3 0108b760-962f-4c8e-b09b-993fbfd21389 22b336a3bfe4008486c988a640eaae0d {"aliquot_tag": "ALQ_e7c55fa5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02010.RNA-Seq.transcriptome.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.transcriptome.gdc_realn.bam 11967319195 BAM transcriptome harmonized CPTAC3 afac27e7-7f52-4a1e-9f35-7cc4acceb554 a2e014d58376c07407b78bf44d0e7ed4 {"aliquot_tag": "ALQ_5ddad2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.WGS.N C3N-02010 PDA WGS blood_normal CPT0241760002 CPT0241760002.WholeGenome.RP-1303.bam 91505987615 BAM submitted_aligned CPTAC3 27fd40ab-e229-42df-8562-4274b676cda5 d283cef550e3f38326453079f8a1d950 {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02010.WGS.N.hg38 C3N-02010 PDA WGS blood_normal CPT0241760002 b5d2a8d2-6e19-47d0-a91e-3758551f94ea_wgs_gdc_realn.bam 132268099792 BAM harmonized CPTAC3 c20649ed-3890-46a2-98e4-98effe85249c 05bde3acce4d1fd44ecf9b570f2ad84b {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02010.WGS.T C3N-02010 PDA WGS tumor CPT0241500007 CPT0241500007.WholeGenome.RP-1303.bam 147134553298 BAM submitted_aligned CPTAC3 29d76f7b-3c7c-45bf-808c-030dd5aa818c 25113a392766b53efefc770a9b439a2b {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.WGS.T.hg38 C3N-02010 PDA WGS tumor CPT0241500007 d5c73e9d-e1db-4dd1-aa12-4a3c0b2fd33e_wgs_gdc_realn.bam 215825848801 BAM harmonized CPTAC3 167266e8-56ad-4c3b-8b74-8b28bc95da77 c776f9fafe45419e2a87cb9c7b024324 {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.WXS.N C3N-02010 PDA WXS blood_normal CPT0241760002 CPT0241760002.WholeExome.RP-1303.bam 25825206460 BAM submitted_aligned CPTAC3 1806b28b-5cb5-4599-9732-c42b8487dd5c 33a621716983b1dcd2b53bfa240f75c3 {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02010.WXS.N.hg38 C3N-02010 PDA WXS blood_normal CPT0241760002 b5d2a8d2-6e19-47d0-a91e-3758551f94ea_wxs_gdc_realn.bam 35425875415 BAM harmonized CPTAC3 39b94848-eef9-4aa0-b614-6703fd6edb1e f88aafb7f538d13bfdcb685d6bafb2b0 {"aliquot_tag": "ALQ_6847d631", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02010.WXS.T C3N-02010 PDA WXS tumor CPT0241500007 CPT0241500007.WholeExome.RP-1303.bam 24798902892 BAM submitted_aligned CPTAC3 0b301491-679c-43dd-bf14-8ac0d24fc9e4 5e7fdf99b62ce0f5190bd664ddf801c7 {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02010.WXS.T.hg38 C3N-02010 PDA WXS tumor CPT0241500007 d5c73e9d-e1db-4dd1-aa12-4a3c0b2fd33e_wxs_gdc_realn.bam 34429079937 BAM harmonized CPTAC3 557dc8dc-2cdf-44e6-94a1-9d320217236e f085f8924831e2ebdec03ececf2f995b {"aliquot_tag": "ALQ_daa57615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02012.MethArray.Green.T C3N-02012 UCEC Methylation_Array tumor CPT0115470009 203219650042_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 f3094330-0878-4f1a-ac58-04dcab9220e8 ceefe1cedddb1726e2a68ef596a17bea {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.MethArray.Red.T C3N-02012 UCEC Methylation_Array tumor CPT0115470009 203219650042_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 53e3174b-3223-4c54-a602-69e393b80e3f 249a821053c01d4a42ee6f58fbdffba9 {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.miRNA-Seq.S18_L002_R1.T C3N-02012 UCEC miRNA-Seq tumor CPT0115470006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTCCGC_S18_L002_R1_001.unaln.bam 280980785 BAM S18_L002_R1 submitted_unaligned CPTAC3 f5dc29dc-7ef5-424b-873c-79488c443f3f b787d70c7cad8dd0b48e5ae30c9e5bd5 {"aliquot_tag": "ALQ_51fc5f84", "sample": "S18", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.miRNA-Seq.T.hg38 C3N-02012 UCEC miRNA-Seq tumor CPT0115470006 e5da0962-5a06-4e41-b177-8b5a431ce494_mirnaseq_gdc_realn.bam 329544177 BAM harmonized CPTAC3 8a11e0a6-c508-40b7-b59a-ddb85021083a 96fc7d3eadf7025a40bbae069d67e967 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.chimeric.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.chimeric.gdc_realn.bam 32006029 BAM chimeric harmonized CPTAC3 93df1f7a-5622-483f-8f1c-8adf95960b85 2342ae1a07c77acc3a4d23d719d8b213 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.chimeric.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.chimeric.gdc_realn.bam 50539801 BAM chimeric harmonized CPTAC3 20eb08b7-bc6c-49d0-ad26-de66f3467c90 a7104f698181a3e37bd93cc2d8a2e964 {"aliquot_tag": "ALQ_70a87446", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.genomic.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.genomic.gdc_realn.bam 10045757270 BAM genomic harmonized CPTAC3 795c12ec-2e76-47dd-a0f5-561b844ef6fb e0bd808e16a5bea4ebf707c1d009cc89 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.genomic.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.genomic.gdc_realn.bam 4904050631 BAM genomic harmonized CPTAC3 93119456-c31b-4bd3-8220-9c7ae4e5ea72 51af8b575cdd9c1c7376c3b714a1cd2a {"aliquot_tag": "ALQ_70a87446", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.S22_L006_R1.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4383429182 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 bdb5f05c-3ae8-4f7c-a9aa-47a0e9778ff8 52ebbde5ab88fc2f511dd75ddd7febad {"aliquot_tag": "ALQ_51fc5f84", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.S22_L006_R2.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4413847269 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 dfc66d0d-d425-4524-9a3a-4a3c55fd76d4 c86a7b9aad9bbcf15d3529566fce5cb8 {"aliquot_tag": "ALQ_51fc5f84", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.S61_R1.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R1_001.fastq.gz 2747299807 FASTQ S61_R1 submitted_unaligned CPTAC3 4362daff-a91a-4d2e-8bf7-ab8018d604e7 eb43bc5e1664d1da05092d0c73d71644 {"aliquot_tag": "ALQ_70a87446", "sample": "S61", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.S61_R2.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R2_001.fastq.gz 2868381966 FASTQ S61_R2 submitted_unaligned CPTAC3 2c6f575e-9e22-4359-81e6-7cb669a4a4ce 2492454093708fa77ceb252d2344f946 {"aliquot_tag": "ALQ_70a87446", "sample": "S61", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.transcriptome.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.transcriptome.gdc_realn.bam 11199069793 BAM transcriptome harmonized CPTAC3 bf347293-d55b-4d13-bdfb-2d1d6a50ab27 31a55f102b6ea55f0abbbc8643fda973 {"aliquot_tag": "ALQ_51fc5f84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.RNA-Seq.transcriptome.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.transcriptome.gdc_realn.bam 2692361570 BAM transcriptome harmonized CPTAC3 267aa85b-6f83-44ac-9d5d-779cbfa01607 3855bcbeeb2e45f7f4609eea73f3aec4 {"aliquot_tag": "ALQ_70a87446", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.WGS.N C3N-02012 UCEC WGS blood_normal CPT0116390002 CPT0116390002.WholeGenome.RP-1303.bam 62607107661 BAM submitted_aligned CPTAC3 b8b93532-1066-4785-bd91-560355666abd 3561fc00f96ed8c9c78070f8cdeae58d {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02012.WGS.N.hg38 C3N-02012 UCEC WGS blood_normal CPT0116390002 a87b0618-96ab-4bff-a90e-bed94464d309_wgs_gdc_realn.bam 91406397337 BAM harmonized CPTAC3 6d80ef08-c423-4405-8d7f-342c0f77b1d2 dc9dc52630f92b6f17409e28c0af2f72 {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02012.WGS.T C3N-02012 UCEC WGS tumor CPT0115470009 CPT0115470009.WholeGenome.RP-1303.bam 55042758115 BAM submitted_aligned CPTAC3 2857d8ec-ec5b-42de-8138-3a041ee745d3 14d898fb53b32c3af0d986021e65ef0d {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.WGS.T.hg38 C3N-02012 UCEC WGS tumor CPT0115470009 549a8eef-57f5-44e5-b0bb-8620f57cf844_wgs_gdc_realn.bam 81778399698 BAM harmonized CPTAC3 f8dafe31-2f34-466f-a11e-2c8ab38fd6f6 3fbc81482f1d3a30cba2bb96eeeae0b9 {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.WXS.N C3N-02012 UCEC WXS blood_normal CPT0116390002 CPT0116390002.WholeExome.RP-1303.bam 31306238839 BAM submitted_aligned CPTAC3 04a86542-3719-44a7-a58a-d23a35a8fc13 82b19ee0d7b85a6fc4a0c28810310912 {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02012.WXS.N.hg38 C3N-02012 UCEC WXS blood_normal CPT0116390002 a87b0618-96ab-4bff-a90e-bed94464d309_wxs_gdc_realn.bam 42890918867 BAM harmonized CPTAC3 c18f0bbb-14e0-45f6-9244-cffd3bd61c54 d718310bfb9950bbb6659b44c7e18ca0 {"aliquot_tag": "ALQ_c54c0fd9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02012.WXS.T C3N-02012 UCEC WXS tumor CPT0115470009 CPT0115470009.WholeExome.RP-1303.bam 27885976142 BAM submitted_aligned CPTAC3 75341caa-7b4c-47ca-bc1f-9e3da6c7d5df 5b42c9663b87be853dabe028a0d403af {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02012.WXS.T.hg38 C3N-02012 UCEC WXS tumor CPT0115470009 549a8eef-57f5-44e5-b0bb-8620f57cf844_wxs_gdc_realn.bam 38318056369 BAM harmonized CPTAC3 62dc2949-ce15-4bfc-9957-b801add8d650 ec5ce4ee5e1e9a17e7e3001ec4d716b2 {"aliquot_tag": "ALQ_c1434215", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02015.MethArray.Green.T C3N-02015 CCRCC Methylation_Array tumor CPT0115350009 203219670147_R02C01_Grn.idat 13676235 IDAT Green NA CPTAC3 5834a76b-5fd6-491e-905b-3caee72f02a8 d08807add8b5b466e180ea6ec47eef75 {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.MethArray.Red.T C3N-02015 CCRCC Methylation_Array tumor CPT0115350009 203219670147_R02C01_Red.idat 13676235 IDAT Red NA CPTAC3 4ee446fc-15f5-4db6-8ed0-f1cdd78d3cbe 5535851f5a3a9294440db91ef568010a {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.miRNA-Seq.S17_L002_R1.T C3N-02015 CCRCC miRNA-Seq tumor CPT0115350006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTAGAG_S17_L002_R1_001.unaln.bam 229028120 BAM S17_L002_R1 submitted_unaligned CPTAC3 e66145cb-0b23-4dba-97a2-b3c57d8cdbdd 778821a739722935d61c26e0a97b9310 {"aliquot_tag": "ALQ_36393c5c", "sample": "S17", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.miRNA-Seq.T.hg38 C3N-02015 CCRCC miRNA-Seq tumor CPT0115350006 4f873559-5e37-451d-8b35-a2f53758f34a_mirnaseq_gdc_realn.bam 246072936 BAM harmonized CPTAC3 758dc808-ce43-4829-a7a7-499d1adc5f04 f790abeaed9d1d34183de0750ea1974b {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.RNA-Seq.chimeric.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.chimeric.gdc_realn.bam 37313205 BAM chimeric harmonized CPTAC3 9875229c-c4ab-4e86-ae87-7d600c29606f f984bc9d836d16be14e66f9e614df56a {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.RNA-Seq.genomic.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.genomic.gdc_realn.bam 9784184583 BAM genomic harmonized CPTAC3 bcf7b49d-d594-42b0-8889-a4dead890403 1524168f4619fd80e9b43dcd4a17defe {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.RNA-Seq.S23_L006_R1.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4434486962 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 ab5b95fe-7549-4a39-ba52-98d1fdd97c6f c2bf33b5b68984a3cfdd5210a1e76a7e {"aliquot_tag": "ALQ_36393c5c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.RNA-Seq.S23_L006_R2.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4922661565 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 41a48780-0805-4c99-83d5-4b0edf135893 54f11ebc6c92916f20a66472cabb507f {"aliquot_tag": "ALQ_36393c5c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.RNA-Seq.transcriptome.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.transcriptome.gdc_realn.bam 12681307061 BAM transcriptome harmonized CPTAC3 7ab1e3bc-8b5a-465f-ba19-088765b09250 77697b9a7cfda9f1843f3a841932a23d {"aliquot_tag": "ALQ_36393c5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.WGS.N C3N-02015 CCRCC WGS blood_normal CPT0116350002 CPT0116350002.WholeGenome.RP-1303.bam 71914756446 BAM submitted_aligned CPTAC3 6dd204de-1555-4cba-8848-6d9372621a05 dad976e98f091db84c3e5d72f2ad1a05 {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02015.WGS.N.hg38 C3N-02015 CCRCC WGS blood_normal CPT0116350002 b8cb0095-4cbe-4459-a92e-436d4dac96dd_wgs_gdc_realn.bam 106378410715 BAM harmonized CPTAC3 aa254bc8-36f8-4b03-877d-84e51f082537 b97b570ddd7f4c9721b1ec96576441ae {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02015.WGS.T C3N-02015 CCRCC WGS tumor CPT0115350009 CPT0115350009.WholeGenome.RP-1303.bam 57749479306 BAM submitted_aligned CPTAC3 c94cd4f7-607f-473e-ab11-d2371df1983f 7d0be0b54fa95742157c62afec73d21a {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.WGS.T.hg38 C3N-02015 CCRCC WGS tumor CPT0115350009 51501cd8-6fd3-4be0-8012-0360affa0519_wgs_gdc_realn.bam 83736800799 BAM harmonized CPTAC3 c52e298d-7b73-4343-a4ca-b0b75ed0317e 4f131e37a92e068bf7d1fc95484ed64a {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.WXS.N C3N-02015 CCRCC WXS blood_normal CPT0116350002 CPT0116350002.WholeExome.RP-1303.bam 32734900944 BAM submitted_aligned CPTAC3 b17f5d0e-b3bc-44a4-b9c9-4caf77670b4d 203ad4538fa76b4a245cb83796ca2996 {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02015.WXS.N.hg38 C3N-02015 CCRCC WXS blood_normal CPT0116350002 b8cb0095-4cbe-4459-a92e-436d4dac96dd_wxs_gdc_realn.bam 45895765263 BAM harmonized CPTAC3 ac34ed55-1ecb-42d9-8f6e-62f481a84ffa 389c2daa417abce3e1c24a3a14b651b5 {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02015.WXS.T C3N-02015 CCRCC WXS tumor CPT0115350009 CPT0115350009.WholeExome.RP-1303.bam 23113584357 BAM submitted_aligned CPTAC3 34535d65-9338-4186-a33c-8b91319f01aa 1d10078745ad3798f65403fac6e95c0d {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02015.WXS.T.hg38 C3N-02015 CCRCC WXS tumor CPT0115350009 51501cd8-6fd3-4be0-8012-0360affa0519_wxs_gdc_realn.bam 30882516573 BAM harmonized CPTAC3 be150359-5e01-407b-9b7f-6e1c074e10db 1cd6e40d1d0641915066620fe0fe420b {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02027.MethArray.Green.T C3N-02027 UCEC Methylation_Array tumor CPT0133400011 203561450017_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bd6816d9-665b-4f88-b95c-6822d046b682 571bbbab048733225213ec06067d0cde {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.MethArray.Red.T C3N-02027 UCEC Methylation_Array tumor CPT0133400011 203561450017_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 a448da82-b138-478c-94bf-a5785f24ad76 b9322a2c9ef267921ebcfee171a4ea4b {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.miRNA-Seq.S4_L003_R1.T C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L003_R1_001.unaln.bam 267214195 BAM S4_L003_R1 submitted_unaligned CPTAC3 d62d9a02-c8ae-4dcd-a89a-8c1e542611ea 89190d59d0471cebb1e3254d96d80f15 {"aliquot_tag": "ALQ_353ce1be", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.miRNA-Seq.T.hg38 C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 14f86eba-fedf-45e7-b1cc-f2ddefc0b7f9_mirnaseq_gdc_realn.bam 320737998 BAM harmonized CPTAC3 a534a26d-c55c-4c4e-b00f-549ff9a374e3 c54c79762e24827f6f7c144bae7c68b5 {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.chimeric.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.chimeric.gdc_realn.bam 38771611 BAM chimeric harmonized CPTAC3 ad11f368-b786-442e-b995-3ddef8976552 253fe326ab4d5a6f3b88738caaebd3a0 {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.chimeric.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.chimeric.gdc_realn.bam 226156282 BAM chimeric harmonized CPTAC3 15dd3a58-107e-4dc6-951a-606c6f63839d aa6ba0a4a791d61612d50c394d7b5b67 {"aliquot_tag": "ALQ_a9cd82b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.genomic.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.genomic.gdc_realn.bam 8843144736 BAM genomic harmonized CPTAC3 1d579ff0-0be7-4628-89f9-d4b2cb49545c 05d94b3667050498d26c64df06d9e351 {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.genomic.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.genomic.gdc_realn.bam 10039392240 BAM genomic harmonized CPTAC3 704b7a79-9c93-4777-ab04-6e86db46cc74 c476981e9e7406ada8c3d06414a6f414 {"aliquot_tag": "ALQ_a9cd82b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.S60_R1.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R1_001.fastq.gz 6362363770 FASTQ S60_R1 submitted_unaligned CPTAC3 218324f9-bf29-41d6-97d5-401ce2f8df81 0a9d6105f54b5d277e936599bff4bda4 {"aliquot_tag": "ALQ_a9cd82b0", "sample": "S60", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.S60_R2.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R2_001.fastq.gz 6537001973 FASTQ S60_R2 submitted_unaligned CPTAC3 6e66bc80-8132-4358-bb81-ce52ac94db83 f5b870bf2464d4035cea2762a52da149 {"aliquot_tag": "ALQ_a9cd82b0", "sample": "S60", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.S7_L002_R1.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R1_001.fastq.gz 4213763179 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 c3cc9a23-200c-4a9f-8c0e-3813c6df63fd 6b6d91d1289d749e761a00226b9178c1 {"aliquot_tag": "ALQ_353ce1be", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.S7_L002_R2.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R2_001.fastq.gz 4830339139 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 b2b3f26a-8a38-4315-a1a5-ab0c74194a58 8402fb555113b0bc0c74b641941f0caf {"aliquot_tag": "ALQ_353ce1be", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.transcriptome.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.transcriptome.gdc_realn.bam 10567540668 BAM transcriptome harmonized CPTAC3 6dd75490-b972-4d54-a8ff-94158e4682d7 f0b758fbf6f72055a383c72016455dde {"aliquot_tag": "ALQ_353ce1be", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.RNA-Seq.transcriptome.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.transcriptome.gdc_realn.bam 8209264200 BAM transcriptome harmonized CPTAC3 403f0924-1c3d-4d68-b8f4-23e846e87f4b 703b95afb54df135562322e48b031ecd {"aliquot_tag": "ALQ_a9cd82b0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.WGS.N C3N-02027 UCEC WGS blood_normal CPT0133520002 CPT0133520002.WholeGenome.RP-1303.bam 56441091181 BAM submitted_aligned CPTAC3 51e78953-143d-49ae-9d5f-edacdcfd8f8b 4fac949711890ab4f577dd6499f29031 {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02027.WGS.N.hg38 C3N-02027 UCEC WGS blood_normal CPT0133520002 e17ffaae-a211-4d56-8412-dc0563c72044_wgs_gdc_realn.bam 82064450975 BAM harmonized CPTAC3 d3258f4e-315e-4987-877d-9f6e62bc6e39 1514b6841d86692cbce4eb357d1e91cc {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02027.WGS.T C3N-02027 UCEC WGS tumor CPT0133400011 CPT0133400011.WholeGenome.RP-1303.bam 68361661481 BAM submitted_aligned CPTAC3 315a4c3c-f57e-4430-9122-4c83673c465a 9440ec3823b8d2b129af8bf30b5b535f {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.WGS.T.hg38 C3N-02027 UCEC WGS tumor CPT0133400011 abd04eab-b42e-48ed-81cb-f6c81fcb6410_wgs_gdc_realn.bam 99482783512 BAM harmonized CPTAC3 5af5cdf7-f8e0-4297-82ff-a00c5047e953 ab0bf22bd9c3cc19fb23b77139f2d3db {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.WXS.N C3N-02027 UCEC WXS blood_normal CPT0133520002 CPT0133520002.WholeExome.RP-1303.bam 25510561164 BAM submitted_aligned CPTAC3 8b15b080-7589-426e-a3d9-8c327ff0430a 1d2e67c0aa80e31ae59fc05947fff15a {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02027.WXS.N.hg38 C3N-02027 UCEC WXS blood_normal CPT0133520002 e17ffaae-a211-4d56-8412-dc0563c72044_wxs_gdc_realn.bam 34428733491 BAM harmonized CPTAC3 23c57dce-a4f7-4c75-b73d-c288630b1130 f616576e9e5f92d539aa459c0b36478b {"aliquot_tag": "ALQ_74d8f50f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02027.WXS.T C3N-02027 UCEC WXS tumor CPT0133400011 CPT0133400011.WholeExome.RP-1303.bam 23556439712 BAM submitted_aligned CPTAC3 4e658ebb-e2af-4a90-8cf7-80efae5508a8 96430c3c0cdb8f41a8bc798f94e3fe4f {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02027.WXS.T.hg38 C3N-02027 UCEC WXS tumor CPT0133400011 abd04eab-b42e-48ed-81cb-f6c81fcb6410_wxs_gdc_realn.bam 33414535569 BAM harmonized CPTAC3 900b16a1-b1b1-4725-88a8-44250d99f964 c401d9297c26d8da02dadd8cf526d10b {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.MethArray.Green.T C3N-02028 UCEC Methylation_Array tumor CPT0133600006 203561450084_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b4f15ed7-7b09-4491-a1dc-0a28fc0e3416 afef9e71655062d14eccd8ec4c3e389d {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.MethArray.Red.T C3N-02028 UCEC Methylation_Array tumor CPT0133600006 203561450084_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 90202837-7ff2-4fd5-9f16-01fc95f0afb7 8a45afa9084adcd1cc07568951443344 {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.miRNA-Seq.S158_L008_R1.T C3N-02028 UCEC miRNA-Seq tumor CPT0133600009 190828_UNC32-K00270_0200_BH7GVJBBXY_GATCAG_S158_L008_R1_001.unaln.bam 245615074 BAM S158_L008_R1 submitted_unaligned CPTAC3 a1cb3f88-5e06-4ee2-a84c-3873e92e8ff1 21e5924005e3e1dda3eb2df26ebf5de6 {"aliquot_tag": "ALQ_1f5e0d49", "sample": "S158", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.miRNA-Seq.T.hg38 C3N-02028 UCEC miRNA-Seq tumor CPT0133600009 8b5611b3-8514-45a2-9da9-1b8e12950072_mirnaseq_gdc_realn.bam 284865569 BAM harmonized CPTAC3 29ce5fca-55fe-40ee-ab45-a3e9e066c51a be27a7f8f13817f981a41317378c9443 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.chimeric.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.chimeric.gdc_realn.bam 30956405 BAM chimeric harmonized CPTAC3 197ccea0-b15c-448f-900c-424bc3a83d7c 141cc620ed6e1eda266c529f25dc1dc6 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.chimeric.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.chimeric.gdc_realn.bam 156211335 BAM chimeric harmonized CPTAC3 6c6a235b-dd86-473e-a757-110e35618ead 1b4301708059edee2ea7046aeec366f3 {"aliquot_tag": "ALQ_e40523bb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.genomic.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.genomic.gdc_realn.bam 7181248789 BAM genomic harmonized CPTAC3 5225222f-9e2d-4e54-a3b8-99258979657b 4bfc3ecf3a505d3b713d09cd68d69bd1 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.genomic.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.genomic.gdc_realn.bam 9863924962 BAM genomic harmonized CPTAC3 ad6e60dc-0d7d-42c6-a5f0-dfa543cb0069 a175867ec5606b19fbe6e8df130e775e {"aliquot_tag": "ALQ_e40523bb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.S29_R1.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R1_001.fastq.gz 4540371632 FASTQ S29_R1 submitted_unaligned CPTAC3 57c9d0ae-35a1-486a-91f2-3808b604d575 b67311db308c308b5745d572a4cf99a7 {"aliquot_tag": "ALQ_e40523bb", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.S29_R2.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R2_001.fastq.gz 4614180178 FASTQ S29_R2 submitted_unaligned CPTAC3 ffcce01f-72a5-469e-a539-632cf9d07034 60900b86c40a609e99a11414106476da {"aliquot_tag": "ALQ_e40523bb", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.S3_L001_R1.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R1_001.fastq.gz 3512432283 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 650a35d7-7d5f-47ae-a9fd-2261d3728c3d b1d93aa30f971e02a3dddfebfc8e45a9 {"aliquot_tag": "ALQ_1f5e0d49", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.S3_L001_R2.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R2_001.fastq.gz 3591655345 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 db4c185c-4d8b-4d80-9eea-8098e257a7f8 f919f02b0f86819648884a480ffb3bc9 {"aliquot_tag": "ALQ_1f5e0d49", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.transcriptome.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.transcriptome.gdc_realn.bam 8956319743 BAM transcriptome harmonized CPTAC3 ff56a1f6-c107-4321-a06d-f5e375a223c5 d343b2bbe8b643a92be56357ae3ebb24 {"aliquot_tag": "ALQ_1f5e0d49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.RNA-Seq.transcriptome.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.transcriptome.gdc_realn.bam 3756727545 BAM transcriptome harmonized CPTAC3 7d75bd08-5ca3-487a-9548-cde4c237d366 843fa844aabcf3c83d62f7a280a74462 {"aliquot_tag": "ALQ_e40523bb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.WGS.N C3N-02028 UCEC WGS blood_normal CPT0133700002 CPT0133700002.WholeGenome.RP-1303.bam 89239370891 BAM submitted_aligned CPTAC3 7ee706af-a536-4e16-bbf9-27be0b29075b 957a830dc3c16af9e8a0cecb38bba289 {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02028.WGS.N.hg38 C3N-02028 UCEC WGS blood_normal CPT0133700002 7ca9695f-4331-43c0-af16-09fc88247605_wgs_gdc_realn.bam 129489764987 BAM harmonized CPTAC3 e249d843-17df-4561-9601-9d5fc2c010f9 e5f8375efaa254c3a3ab6d3daa9590ef {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02028.WGS.T C3N-02028 UCEC WGS tumor CPT0133600006 CPT0133600006.WholeGenome.RP-1303.bam 91559372318 BAM submitted_aligned CPTAC3 55f34b5c-1d7c-4ea2-8e91-d7d40a3149f4 2f94fc56659351cb8207d0e7ce3de143 {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.WGS.T.hg38 C3N-02028 UCEC WGS tumor CPT0133600006 8e786c46-68d2-4c88-80ce-479ff84b737a_wgs_gdc_realn.bam 132464736886 BAM harmonized CPTAC3 8282b5a4-cb70-4721-9266-7a98ef007c7d 6f1f61ecf57a97bc2a96047ed5ccecee {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.WXS.N C3N-02028 UCEC WXS blood_normal CPT0133700002 CPT0133700002.WholeExome.RP-1303.bam 33730456353 BAM submitted_aligned CPTAC3 d45d65cd-1164-473d-a418-c658b3d00efc 1f3dedf9be8ffe91b007b3048a897525 {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02028.WXS.N.hg38 C3N-02028 UCEC WXS blood_normal CPT0133700002 7ca9695f-4331-43c0-af16-09fc88247605_wxs_gdc_realn.bam 46322276387 BAM harmonized CPTAC3 7dba5f79-10d3-40bf-bf2e-313e75648a56 24ff6b265761cfed2c2d8154f1d6982f {"aliquot_tag": "ALQ_43d00764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02028.WXS.T C3N-02028 UCEC WXS tumor CPT0133600006 CPT0133600006.WholeExome.RP-1303.bam 20299901395 BAM submitted_aligned CPTAC3 502127ce-e17b-4392-8c4e-8ae350a52ff7 e2bb652827f57ece8371d4c2e328c15b {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02028.WXS.T.hg38 C3N-02028 UCEC WXS tumor CPT0133600006 8e786c46-68d2-4c88-80ce-479ff84b737a_wxs_gdc_realn.bam 28292657787 BAM harmonized CPTAC3 14be1940-8f7a-4a7f-ae13-df21f70ae11a 4150446b035d98312ed60c4ab7b3e332 {"aliquot_tag": "ALQ_8fe110d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_1ad835b9.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.chimeric.gdc_realn.bam 154075949 BAM chimeric harmonized CPTAC3 2ab0bceb-e5c1-4a92-9f8f-b24441fd6acd eaaa52ec1e895bba626dc59b1cccbe97 {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_1ad835b9.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.genomic.gdc_realn.bam 9224759649 BAM genomic harmonized CPTAC3 2726b697-bb96-4e45-88af-8df8dc4d93a1 c1687b97c4e6728a985ef1c48bb7a44b {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_1ad835b9.RNA-Seq.S5_L002_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R1_001.fastq.gz 3961602699 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 5ad5897e-92b3-47e6-8312-699a61fc5136 2e1fb3e955b95ba27f59a8fbaf7a9d18 {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_1ad835b9.RNA-Seq.S5_L002_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R2_001.fastq.gz 4349735026 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 a8d02375-61bb-4f66-b57e-b81abb4e38d4 89bea8da76d485adf118d330bca74fbb {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_1ad835b9.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.transcriptome.gdc_realn.bam 5564656279 BAM transcriptome harmonized CPTAC3 265609a2-44fb-4fb0-958f-940b5771e099 e7f080d76dfae198416e145993247b35 {"aliquot_tag": "DUP_1ad835b9", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_251d530e.WXS.T C3N-02030 UCEC WXS tumor CPT0133780085 CPT0133780085.WholeExome.RP-1303.bam 21577329994 BAM submitted_aligned CPTAC3 dca9eda1-806d-4914-80df-806beca61919 f59507d0fad331a7800f51f02163463a {"aliquot_tag": "DUP_251d530e", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_251d530e.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780085 d8179cc9-97e8-42a6-8839-778705458d3e_wxs_gdc_realn.bam 29605838581 BAM harmonized CPTAC3 dff2a285-3794-4f83-95b1-22d38ec2a3e4 ae538a59cc87271f3b3e8b4e4047eca2 {"aliquot_tag": "DUP_251d530e", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_2cab1f25.WXS.T C3N-02030 UCEC WXS tumor CPT0133780089 CPT0133780089.WholeExome.RP-1303.bam 25266670340 BAM submitted_aligned CPTAC3 83932d96-4b3d-4005-a5e5-c01745ca1d73 333483b5d6760d2b138233657fde8e52 {"aliquot_tag": "DUP_2cab1f25", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_2cab1f25.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780089 88052f71-e18e-4efa-92ed-f71f272f2cb2_wxs_gdc_realn.bam 34293520564 BAM harmonized CPTAC3 3862f1d3-4e2a-47d6-8d4e-174885e130ec 4e024dafe384aaf582ee177ad94c85b5 {"aliquot_tag": "DUP_2cab1f25", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b6ba656.WGS.T C3N-02030 UCEC WGS tumor CPT0133780091 CPT0133780091.WholeGenome.RP-2158.bam 30001609723 BAM submitted_aligned CPTAC3 72051de1-573d-43b4-b4ae-c0ab9171756e e9a381f1b2f5fb7b48b9b86c03463bca {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b6ba656.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133780091 dbd52ff5-66e8-40d5-a19b-6cdfb27721e4_wgs_gdc_realn.bam 86147208736 BAM harmonized CPTAC3 9c2855bb-1dc7-4f7d-9718-fe4353cd1759 d8b8f8f99495b263bc7ca44e9c0a4f83 {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b6ba656.WXS.T C3N-02030 UCEC WXS tumor CPT0133780091 CPT0133780091.WholeExome.RP-1303.bam 20663772908 BAM submitted_aligned CPTAC3 7ed3de68-efac-4557-a0df-9e47e12dbeae 8bcda8434ac6a139f2c8a3d6e2e0f71c {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b6ba656.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780091 dbd52ff5-66e8-40d5-a19b-6cdfb27721e4_wxs_gdc_realn.bam 28486630304 BAM harmonized CPTAC3 25b66613-911b-4521-902d-66015177acb7 b14dd8d92a5ab70e4bfd158bdaca6ec2 {"aliquot_tag": "DUP_3b6ba656", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b8c1e7b.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.chimeric.gdc_realn.bam 286645236 BAM chimeric harmonized CPTAC3 d262c419-7255-445f-a933-d869a891a174 cf58b164ac15bfa61b5e38b3f7c65cbf {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b8c1e7b.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.genomic.gdc_realn.bam 11508641502 BAM genomic harmonized CPTAC3 cc71456f-b4dc-4094-afc5-e847d8843898 b1a3d8c883824841ed213513a60c927e {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b8c1e7b.RNA-Seq.S2_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4709238926 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 d2e5a5ef-168b-4eee-80a3-2d7910c501b5 fa77d5dd36a6977ed864d09816d221ce {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b8c1e7b.RNA-Seq.S2_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5336664080 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 2cd879a9-b2a5-4bdd-9dcb-77e006ecaff8 ff82d64811164b98b54bc2eb04db7df4 {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_3b8c1e7b.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.transcriptome.gdc_realn.bam 4769238916 BAM transcriptome harmonized CPTAC3 87dbca4c-b385-49a3-8b71-caf026ed20bf 3a253a7f9fafd7acb9b1c071475666f8 {"aliquot_tag": "DUP_3b8c1e7b", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_44978cc.WGS.T C3N-02030 UCEC WGS tumor CPT0133760082 CPT0133760082.WholeGenome.RP-2158.bam 30949053164 BAM submitted_aligned CPTAC3 c77518b5-e0c8-406e-9329-07c68c7d61ca 0e1ef9b9b1fc8d9b088bc5a8aa5546fb {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_44978cc.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760082 e64aabb6-f30a-4466-958c-14a07d5d7e3f_wgs_gdc_realn.bam 91538682587 BAM harmonized CPTAC3 0d155398-634d-4993-a4ed-cdae99518bae f2c84c4619cdaef053b265054aca8b0b {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_44978cc.WXS.T C3N-02030 UCEC WXS tumor CPT0133760082 CPT0133760082.WholeExome.RP-1303.bam 25220285181 BAM submitted_aligned CPTAC3 ac1f0679-c216-42e3-b30d-94708066bdd6 76c4a7268eed2916e9e6b6ff48ae997e {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_44978cc.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760082 e64aabb6-f30a-4466-958c-14a07d5d7e3f_wxs_gdc_realn.bam 34352310115 BAM harmonized CPTAC3 7321f870-b841-475d-902c-f7e3f6fcd697 d114cb61e31f6753f3554f6a588e3ce3 {"aliquot_tag": "DUP_44978cc", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4aec0e1.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.chimeric.gdc_realn.bam 214596980 BAM chimeric harmonized CPTAC3 c436052a-bcdc-4912-ab85-23c5d83fbab5 366c62378b359f7ebe7e25462a5b358a {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4aec0e1.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.genomic.gdc_realn.bam 8836919717 BAM genomic harmonized CPTAC3 6c71d1b8-5128-43c2-a2c3-771d7d85f39d 7f833f2312339ebd5b6b5eb0089bd561 {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4aec0e1.RNA-Seq.S11_L003_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R1_001.fastq.gz 3891952742 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 bac36753-12a5-4b17-a95b-628317566e97 121ffaaf4a940f2e4f8c6cf071556cde {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4aec0e1.RNA-Seq.S11_L003_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R2_001.fastq.gz 4293519061 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 80bb4040-ac35-42eb-afb0-a961027bc4de 29194e4acb96fe14894f620c9afec4ac {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4aec0e1.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.transcriptome.gdc_realn.bam 5927790434 BAM transcriptome harmonized CPTAC3 67281b68-72d0-493d-a614-16d5345fe604 8bc8cad8ea1ad1e7d4af1cb652f082ad {"aliquot_tag": "DUP_4aec0e1", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4be6eaf4.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.chimeric.gdc_realn.bam 455028579 BAM chimeric harmonized CPTAC3 a773fc0b-afa1-40a9-a890-94b8cb1bf085 b43b3e314c84b9959922e6de8ca9b36a {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4be6eaf4.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.genomic.gdc_realn.bam 13119649724 BAM genomic harmonized CPTAC3 720c0dc1-51c8-4e38-b460-99e18a583082 8bf9c44c49069fcd813b43d2defcb9f1 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4be6eaf4.RNA-Seq.S1_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 5251570745 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 07069cd0-9954-4076-b91e-619b40f4433e 6217af3aeafb6445a8d79e8fd604ceb5 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4be6eaf4.RNA-Seq.S1_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 5905196935 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 0f2b5b23-32e9-4675-84ab-85fe96dd5c94 71be54125451f4e81aab938fff150ce7 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4be6eaf4.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.transcriptome.gdc_realn.bam 6077931898 BAM transcriptome harmonized CPTAC3 33e7f4e0-1de3-472b-b36a-3e51f29c89a5 ae340cbe750bcd27235a0d2d911391d9 {"aliquot_tag": "DUP_4be6eaf4", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4c6c96c0.WXS.T C3N-02030 UCEC WXS tumor CPT0133780090 CPT0133780090.WholeExome.RP-1303.bam 30268747107 BAM submitted_aligned CPTAC3 3480f6d3-ab17-4ee8-891f-f19e29693499 26c51e36419e541adb2e5b506fe22498 {"aliquot_tag": "DUP_4c6c96c0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_4c6c96c0.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780090 b441401d-5964-4d23-b1f8-304a677e5d14_wxs_gdc_realn.bam 41853619347 BAM harmonized CPTAC3 51af4f26-9a93-4779-b2a9-89237d338f7f e1d2f0ee7f692c439c8fc3d3ac04ac5e {"aliquot_tag": "DUP_4c6c96c0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_63048d1d.WGS.T C3N-02030 UCEC WGS tumor CPT0133760078 CPT0133760078.WholeGenome.RP-2158.bam 17147710287 BAM submitted_aligned CPTAC3 eeab7ce9-56b8-499a-a396-0f605d09735c ba21b9972631b4ba1190190784b0d7ab {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_63048d1d.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760078 271f937c-0f6e-4fe0-bcab-bc0edfab4f76_wgs_gdc_realn.bam 50422331604 BAM harmonized CPTAC3 8be06db8-a0a0-443b-be0d-223011fcfa99 b9363b4da43e60bd1e8834ebfce89ebb {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_63048d1d.WXS.T C3N-02030 UCEC WXS tumor CPT0133760078 CPT0133760078.WholeExome.RP-1303.bam 23013761461 BAM submitted_aligned CPTAC3 ddeb3e8e-7e76-4413-8a5b-e3dbc9cc8911 e73b57883766bfe2bb23b02de432166f {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_63048d1d.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760078 271f937c-0f6e-4fe0-bcab-bc0edfab4f76_wxs_gdc_realn.bam 32112930851 BAM harmonized CPTAC3 6a5e0b24-faa2-4c5d-afa0-fa2936ad11fc c7b5bf05329a367bad1825307e1421d9 {"aliquot_tag": "DUP_63048d1d", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_734e485a.WGS.T C3N-02030 UCEC WGS tumor CPT0133760083 CPT0133760083.WholeGenome.RP-2158.bam 15754014827 BAM submitted_aligned CPTAC3 676124cb-fee7-4248-859d-4f94274171a8 f81b7b3094dc617f952620aad7931839 {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_734e485a.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760083 7913b077-d539-41c8-8060-1ef6258df54c_wgs_gdc_realn.bam 46070776825 BAM harmonized CPTAC3 5a9899f1-8a2a-4cc8-8d6e-e0c832b52b5a eb2596384d886f06a0474ad4be8a821a {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_734e485a.WXS.T C3N-02030 UCEC WXS tumor CPT0133760083 CPT0133760083.WholeExome.RP-1303.bam 21284909798 BAM submitted_aligned CPTAC3 4b4e95a9-140a-44b3-aade-d1b94252bba5 787b468e1163db4a2db86f6a5bfa6cbb {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_734e485a.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760083 7913b077-d539-41c8-8060-1ef6258df54c_wxs_gdc_realn.bam 29071173979 BAM harmonized CPTAC3 5f5ba4a2-1f4f-4e72-bd65-d8bb36eeb059 a8f8ef573b4b5ca56e786275303d128e {"aliquot_tag": "DUP_734e485a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_7a1fbc5c.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.chimeric.gdc_realn.bam 164417489 BAM chimeric harmonized CPTAC3 1c1d948b-7f2f-4850-afde-dd89afda7ccf c14b83e5990cd7593486f453469e7ed7 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_7a1fbc5c.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.genomic.gdc_realn.bam 8894981310 BAM genomic harmonized CPTAC3 e13cdcfa-37c0-4a03-9e67-c34b54f2e562 27565909e026fe9c9b7463cfab667003 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_7a1fbc5c.RNA-Seq.S4_L002_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R1_001.fastq.gz 3650759312 FASTQ S4_L002_R1 submitted_unaligned CPTAC3 bc77c5b2-bb5b-4b41-ba1e-e7fe70d26030 2719d1cd5f302ea0299ef775023b07a0 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_7a1fbc5c.RNA-Seq.S4_L002_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R2_001.fastq.gz 3948002383 FASTQ S4_L002_R2 submitted_unaligned CPTAC3 ca28739a-4a7e-4bf1-82f8-421b65b9be40 08c8c91c7692c9ae924a5cf646d0b411 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S4", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_7a1fbc5c.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.transcriptome.gdc_realn.bam 3889777987 BAM transcriptome harmonized CPTAC3 23fbe2c3-5ae8-4075-bf3c-53a5e9fe1161 781985d8f4e6c53049a89644e772b7d0 {"aliquot_tag": "DUP_7a1fbc5c", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_84bca01a.WGS.T C3N-02030 UCEC WGS tumor CPT0133760076 CPT0133760076.WholeGenome.RP-2158.bam 25052943166 BAM submitted_aligned CPTAC3 1c747cee-a357-4da4-bea9-96454dbfd420 16d8b09b2614d85f816d49047195edb0 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_84bca01a.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760076 0adb5230-01ea-46f3-8f0a-ae7d91d4c4e6_wgs_gdc_realn.bam 75297593539 BAM harmonized CPTAC3 199d9247-71a4-4efb-94d1-3ce66012b272 f184f1fb20523886349420c129b0dbd5 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_84bca01a.WXS.T C3N-02030 UCEC WXS tumor CPT0133760076 CPT0133760076.WholeExome.RP-1303.bam 29426464494 BAM submitted_aligned CPTAC3 249d3a65-6ae3-4c88-a18e-574a63822f58 86764c18b30299620b9aefb171dbc1a7 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_84bca01a.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760076 0adb5230-01ea-46f3-8f0a-ae7d91d4c4e6_wxs_gdc_realn.bam 40589787215 BAM harmonized CPTAC3 80bde6d6-cd8c-460d-ad2a-59f25c126a84 6edb21ff636d719ebfad317acf5eaf06 {"aliquot_tag": "DUP_84bca01a", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_9d402976.WXS.T C3N-02030 UCEC WXS tumor CPT0133760081 CPT0133760081.WholeExome.RP-1303.bam 18755430222 BAM submitted_aligned CPTAC3 f1b0758b-aee9-4452-ac1b-0078fd3c2b75 b1f3976bd734a98860ea5c127e98bc94 {"aliquot_tag": "DUP_9d402976", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_9d402976.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760081 f2304480-635b-405f-ae51-e019c472b798_wxs_gdc_realn.bam 26087738138 BAM harmonized CPTAC3 93b62f09-7ced-4013-844f-91e3f7e30e47 358262f4ce641c1c252c966dcec8369b {"aliquot_tag": "DUP_9d402976", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_a262f7ec.WXS.T C3N-02030 UCEC WXS tumor CPT0133780092 CPT0133780092.WholeExome.RP-1303.bam 15210456768 BAM submitted_aligned CPTAC3 c234274d-e4af-4984-90a2-2e6e94b86c4f 349cd260d0f7511efd2b791bc2c9ebe9 {"aliquot_tag": "DUP_a262f7ec", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_a262f7ec.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780092 4811084b-1a9d-46c1-b3c9-702e65cbaf56_wxs_gdc_realn.bam 21424219326 BAM harmonized CPTAC3 61c562aa-afc1-4d23-8a43-1f4a1c236c05 7dbdba91e58f1c7c7bc06ce11c04a0f4 {"aliquot_tag": "DUP_a262f7ec", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ab3303ea.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.chimeric.gdc_realn.bam 172509214 BAM chimeric harmonized CPTAC3 35dcd42e-dfc3-41d3-bf05-50b9fee9fb1a 876b37294c6573a9e681261e6023ea2d {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ab3303ea.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.genomic.gdc_realn.bam 10853662920 BAM genomic harmonized CPTAC3 bc39032e-5e9c-4997-9594-721ddca43d69 9f657977209e8dade728faec1de212c3 {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ab3303ea.RNA-Seq.S3_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 4507887248 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 45e801c2-3bc4-4d2c-890c-772839aaf7ef 232796b9f856d0d466cd02066c402e3e {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ab3303ea.RNA-Seq.S3_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 5086401011 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 a7184ebc-94ac-457c-9cc9-6287d3732955 41fa1b6c88b4e837b5e35662fcae0829 {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ab3303ea.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.transcriptome.gdc_realn.bam 7579814827 BAM transcriptome harmonized CPTAC3 ff69390f-77c7-462f-9e2d-49117c935c50 5a8047e1dd3cae5bfbc1064632f0ed48 {"aliquot_tag": "DUP_ab3303ea", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_cb133222.WXS.T C3N-02030 UCEC WXS tumor CPT0133780087 CPT0133780087.WholeExome.RP-1303.bam 24860634954 BAM submitted_aligned CPTAC3 080a9922-fb39-4838-ad16-6f68c827f3e6 405ef118010316043ad76ab7630524bd {"aliquot_tag": "DUP_cb133222", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_cb133222.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780087 efc3430c-64c2-419e-874c-27cffb89aba0_wxs_gdc_realn.bam 34308858972 BAM harmonized CPTAC3 7d70a4be-94eb-4d3d-9e77-e71f30ec6ba0 e3da2f573608fbda9b712d817fdb77fe {"aliquot_tag": "DUP_cb133222", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ea4719e0.WGS.T C3N-02030 UCEC WGS tumor CPT0133760080 CPT0133760080.WholeGenome.RP-2158.bam 20531550838 BAM submitted_aligned CPTAC3 8b5f2a0d-287d-477d-9677-a3b452b10d02 1ac8fa20b65c92e02b4f5a6f1eb46be5 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ea4719e0.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760080 07ab6239-d919-4d50-9be4-842845513886_wgs_gdc_realn.bam 60009864616 BAM harmonized CPTAC3 f77935dd-966f-4f62-aaaa-909fbed01106 be22127d92d1c1406d4d8ab3533ecd96 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ea4719e0.WXS.T C3N-02030 UCEC WXS tumor CPT0133760080 CPT0133760080.WholeExome.RP-1303.bam 21734675192 BAM submitted_aligned CPTAC3 8c04ed46-6362-4319-993d-9dbe7a71a969 5f83fc420bacb035468057a809ebc481 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.DUP_ea4719e0.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760080 07ab6239-d919-4d50-9be4-842845513886_wxs_gdc_realn.bam 29737516663 BAM harmonized CPTAC3 769c27a4-1f96-4d8c-a950-37d034810828 8d71cbb141f2eb7551ffd37a9ad76b62 {"aliquot_tag": "DUP_ea4719e0", "aliquot_annotation": "Duplicate item: UCEC LMD Heterogeneity Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.MethArray.Green.T C3N-02030 UCEC Methylation_Array tumor CPT0133770011 203561620087_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 98d0c5b7-0130-4fd5-9e6e-1d583207a77d c6b0aa292b12f4fd2dda45efa8108db4 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.MethArray.Red.T C3N-02030 UCEC Methylation_Array tumor CPT0133770011 203561620087_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e240a310-6a23-49e1-973c-0960e1c3ec41 b5be762ab131ee13c22fd2ec6702466d {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.miRNA-Seq.S5_L003_R1.T C3N-02030 UCEC miRNA-Seq tumor CPT0133770014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACAGTG_S5_L003_R1_001.unaln.bam 194461538 BAM S5_L003_R1 submitted_unaligned CPTAC3 700fc28c-1180-4305-a5ea-45027a60430b 5242e290b204bb0a72b8149813fb1f18 {"aliquot_tag": "ALQ_1884f00", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.miRNA-Seq.T.hg38 C3N-02030 UCEC miRNA-Seq tumor CPT0133770014 5b485b03-ddbd-4589-a450-b37b39c2756e_mirnaseq_gdc_realn.bam 220002404 BAM harmonized CPTAC3 53e7124b-718f-4f12-87fa-7883f7283601 7c73d6f0aa352cc3602159dce129825e {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.chimeric.gdc_realn.bam 33762710 BAM chimeric harmonized CPTAC3 70da8158-e86d-4dd3-83e5-a830507cd401 b02a7d7cd32830c8a24347f9df4e8de9 {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.chimeric.gdc_realn.bam 116657227 BAM chimeric harmonized CPTAC3 b583e804-ecf4-4885-b7dd-ec5c4086dbc9 ac55382684590bef543b6e9ec7314d5d {"aliquot_tag": "ALQ_16efcdbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.genomic.gdc_realn.bam 8146802795 BAM genomic harmonized CPTAC3 28da5b1e-9edc-44f9-8425-024b39b64041 963cce1e1c3f95be793112a99c61f6dd {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.genomic.gdc_realn.bam 9707589677 BAM genomic harmonized CPTAC3 f6befaa4-45b5-478c-8bb0-338fa755bc08 26f0d791cf7445bec12c214e1edc7ada {"aliquot_tag": "ALQ_16efcdbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.S24_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R1_001.fastq.gz 4925673859 FASTQ S24_R1 submitted_unaligned CPTAC3 b68b4254-4ad5-47c1-a888-7e5bfd9d2230 82c3c34380658bfc5d1f9498a0d5c4f4 {"aliquot_tag": "ALQ_16efcdbb", "sample": "S24", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.S24_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R2_001.fastq.gz 5280580142 FASTQ S24_R2 submitted_unaligned CPTAC3 e023cecb-60e1-4393-9159-6dd8d74e7c01 08ecc4ebaadd156efdab9e494311dd25 {"aliquot_tag": "ALQ_16efcdbb", "sample": "S24", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.S3_L001_R1.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R1_001.fastq.gz 3797075959 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 235c78ef-decc-43e8-9cd2-72dc3eb0cd60 21e2472d155c465796ec6f2bb435241a {"aliquot_tag": "ALQ_1884f00", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.S3_L001_R2.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R2_001.fastq.gz 4388626836 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 17857e63-90c3-4bc1-ac11-683694a6ec42 4ea6dccc93ab93ce0fa95f98244748e7 {"aliquot_tag": "ALQ_1884f00", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.transcriptome.gdc_realn.bam 9262388329 BAM transcriptome harmonized CPTAC3 3f60490b-a11f-45a6-bc6f-b3e1bb657296 9351df9e64ad7a8070ec090669c0fb15 {"aliquot_tag": "ALQ_1884f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.transcriptome.gdc_realn.bam 5670720501 BAM transcriptome harmonized CPTAC3 dfea98f4-b8c9-43bb-88e1-97caebc292f6 77837db4683e6c7e603772d14b04a0dd {"aliquot_tag": "ALQ_16efcdbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.WGS.N C3N-02030 UCEC WGS blood_normal CPT0133880002 CPT0133880002.WholeGenome.RP-1303.bam 56644630837 BAM submitted_aligned CPTAC3 215e1766-675e-4186-aef0-49dc4822aec1 00c76a434ceffe6c0dec2e26c0a9b512 {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02030.WGS.N.hg38 C3N-02030 UCEC WGS blood_normal CPT0133880002 138b1cf0-0ac2-46d6-b211-35060de01e80_wgs_gdc_realn.bam 82771416633 BAM harmonized CPTAC3 6bef4527-ba45-445e-a6da-5b29ba4e4476 071626c6d37516519d379a17e2df418d {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02030.WGS.T C3N-02030 UCEC WGS tumor CPT0133770011 CPT0133770011.WholeGenome.RP-1303.bam 59880248248 BAM submitted_aligned CPTAC3 7d97bcae-e9c5-47ca-957e-5d5e6a834605 aa437a348c9f8cc1ac913cc556e07503 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133770011 a81443de-b861-4bb8-ab23-501062de441f_wgs_gdc_realn.bam 87668734945 BAM harmonized CPTAC3 25031dfb-de49-4bc5-8937-907f5399c3de 5226a1c8942ef3bb377eb9b099fe3520 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.WXS.N C3N-02030 UCEC WXS blood_normal CPT0133880002 CPT0133880002.WholeExome.RP-1303.bam 21961864056 BAM submitted_aligned CPTAC3 9b6ee954-1b61-4dfa-8614-456190fc1cc9 6e87e613b1f8f26ff0c00341dc6b0a80 {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02030.WXS.N.hg38 C3N-02030 UCEC WXS blood_normal CPT0133880002 138b1cf0-0ac2-46d6-b211-35060de01e80_wxs_gdc_realn.bam 29542764494 BAM harmonized CPTAC3 c7442e46-9519-440d-b825-b49991b0afd2 afa84aa7ee2175e4fad9d4dd4796f77c {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02030.WXS.T C3N-02030 UCEC WXS tumor CPT0133770011 CPT0133770011.WholeExome.RP-1303.bam 26277217133 BAM submitted_aligned CPTAC3 9eb871bc-f6e1-4ded-ba2c-e208a32b0220 bdd33fa830733cff58f5f4f6ccf30b2e {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02030.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133770011 a81443de-b861-4bb8-ab23-501062de441f_wxs_gdc_realn.bam 37279872369 BAM harmonized CPTAC3 439aba9f-6e4b-45c4-ba30-785dabaf1d23 0a6a7483b050e7be7b1e7c0046a9f408 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.MethArray.Green.T C3N-02061 UCEC Methylation_Array tumor CPT0134310011 203561450046_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 02d973a2-8f47-4edd-8f95-6f3b99c0a2d5 8aac8ced04423a898b71af6fc2de0e98 {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.MethArray.Red.T C3N-02061 UCEC Methylation_Array tumor CPT0134310011 203561450046_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 89b1ec19-aa2e-4e6a-aab4-064c998b3e7c 92d6789381ec5e092c57d3ba9bc0871f {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.miRNA-Seq.S39_L004_R1.T C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTATAC_S39_L004_R1_001.unaln.bam 255391443 BAM S39_L004_R1 submitted_unaligned CPTAC3 04a69e12-15b8-44bd-b73f-c2607651671d 11fa6e1dcf54163807ed2928328ce156 {"aliquot_tag": "ALQ_d9488a13", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.miRNA-Seq.T.hg38 C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 c1b3e7b6-7674-41a8-bdfa-fa5c0807b65c_mirnaseq_gdc_realn.bam 289707544 BAM harmonized CPTAC3 6ba41fa9-aa08-48bc-b836-37b9bd2ace35 a61b0f233f9b04101085e2886f2bca9e {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.chimeric.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.chimeric.gdc_realn.bam 42187480 BAM chimeric harmonized CPTAC3 0dc0e20d-9957-40e7-ba00-0f3fc20a1b88 4bcd4f31acdd1eb5aa7bc7a11cfb803d {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.chimeric.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.chimeric.gdc_realn.bam 332592123 BAM chimeric harmonized CPTAC3 ca33185c-ef1b-4854-a3d9-3d6f7964242f c043ded59b0c63cf70b6cc07c70ae10a {"aliquot_tag": "ALQ_4c0fa536", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.genomic.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.genomic.gdc_realn.bam 9792323721 BAM genomic harmonized CPTAC3 213b400c-21df-44bb-bf31-7e3e1ba20ec6 2a255ea0f202c40fd1190d674a3c6bb1 {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.genomic.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.genomic.gdc_realn.bam 15071740605 BAM genomic harmonized CPTAC3 1f6e094e-93e2-4d3c-a140-96b4a3bfa5eb e5dc6db6f90a1990030d652456579089 {"aliquot_tag": "ALQ_4c0fa536", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.S1_L001_R1.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R1_001.fastq.gz 4609613795 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 834a1ce4-7a33-41bf-b0ef-645a82557e31 fd297dba9a65cf8b219c9270f831fec2 {"aliquot_tag": "ALQ_d9488a13", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.S1_L001_R2.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R2_001.fastq.gz 5366879606 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 2f38bdfb-0213-4a76-843d-c94203223963 907e1673bd9b8af6a2c1bddefc545f87 {"aliquot_tag": "ALQ_d9488a13", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.S73_R1.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R1_001.fastq.gz 9773795946 FASTQ S73_R1 submitted_unaligned CPTAC3 41658fc0-3421-4e41-8432-4a5c89da6f30 ee7deacae9e218a4c9c63c9a32f46137 {"aliquot_tag": "ALQ_4c0fa536", "sample": "S73", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.S73_R2.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R2_001.fastq.gz 10112047023 FASTQ S73_R2 submitted_unaligned CPTAC3 7d9506d0-5ea1-4ffb-98c0-f0d8fa633d14 7f91be60fc99705f86e2c6ef8c462113 {"aliquot_tag": "ALQ_4c0fa536", "sample": "S73", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.transcriptome.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.transcriptome.gdc_realn.bam 11512152720 BAM transcriptome harmonized CPTAC3 0ce854e4-fcac-4eb2-bdbe-4f07038f3bfc 51c60ddd1a1961012e1816f5487f943a {"aliquot_tag": "ALQ_d9488a13", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.RNA-Seq.transcriptome.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.transcriptome.gdc_realn.bam 7919328899 BAM transcriptome harmonized CPTAC3 f258936a-65b8-4116-89d4-0e8277a09eb4 7d0882bbb841aad09c136828c8c7576f {"aliquot_tag": "ALQ_4c0fa536", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.WGS.N C3N-02061 UCEC WGS blood_normal CPT0134420002 CPT0134420002.WholeGenome.RP-1303.bam 78380844177 BAM submitted_aligned CPTAC3 17ee790f-8796-457a-9ca8-b5c9934c58d9 7db51d94e4fdb79c5e06517c0e89288d {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02061.WGS.N.hg38 C3N-02061 UCEC WGS blood_normal CPT0134420002 a3f680a5-4014-4b54-a23a-b952959e9e44_wgs_gdc_realn.bam 113099080074 BAM harmonized CPTAC3 88f6cea8-8738-47a4-b0cf-91ed4803c76d 72e9403d94af02c59665277d23a0afe9 {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02061.WGS.T C3N-02061 UCEC WGS tumor CPT0134310011 CPT0134310011.WholeGenome.RP-1303.bam 62515435165 BAM submitted_aligned CPTAC3 6e6798be-4fcb-499f-bbef-b6d2a7a387b0 b6706ad5f0bcc9fc7f9edc581a1cf177 {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.WGS.T.hg38 C3N-02061 UCEC WGS tumor CPT0134310011 70929d2b-ec21-4435-a063-570ec640d8ee_wgs_gdc_realn.bam 89842501130 BAM harmonized CPTAC3 5ef336de-1301-4710-8422-2f15cfd1b164 450489fe787b16c5f282ef18cd92c92c {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.WXS.N C3N-02061 UCEC WXS blood_normal CPT0134420002 CPT0134420002.WholeExome.RP-1303.bam 23649444551 BAM submitted_aligned CPTAC3 e5386a01-8f05-44b0-b3fc-7268bc2b1739 f55bcf7f65f53ddc27ebae84aaae571c {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02061.WXS.N.hg38 C3N-02061 UCEC WXS blood_normal CPT0134420002 a3f680a5-4014-4b54-a23a-b952959e9e44_wxs_gdc_realn.bam 32169313448 BAM harmonized CPTAC3 5526a4b2-bf6b-4dd6-9c8b-392e19ce56e8 cf3ea0d1e550593336546771155d0217 {"aliquot_tag": "ALQ_7a231824", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02061.WXS.T C3N-02061 UCEC WXS tumor CPT0134310011 CPT0134310011.WholeExome.RP-1303.bam 23541678257 BAM submitted_aligned CPTAC3 1bbad7f1-fe5d-4d3f-9d24-a88ce42c66a3 b3c6b2d2742e7a78675144451727ff67 {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02061.WXS.T.hg38 C3N-02061 UCEC WXS tumor CPT0134310011 70929d2b-ec21-4435-a063-570ec640d8ee_wxs_gdc_realn.bam 32525245183 BAM harmonized CPTAC3 b15d8885-f944-43a8-9cd4-b9a48615dea3 f27a0f5e12cfe270050df3f0cc72251e {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.MethArray.Green.T C3N-02062 UCEC Methylation_Array tumor CPT0134500006 203561450041_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7bcdf361-fec6-4026-8c5b-7478c092aa09 3caea805a6282446fffa80590cf0206e {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.MethArray.Red.T C3N-02062 UCEC Methylation_Array tumor CPT0134500006 203561450041_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 49b53031-7806-4a7c-985b-3d0e1a5c2526 10be4632a1287f10a7ba62c4a799f2ee {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.miRNA-Seq.S40_L002_R1.T C3N-02062 UCEC miRNA-Seq tumor CPT0134500009 190813_UNC32-K00270_0196_AH5MCWBBXY_GGCTAC_S40_L002_R1_001.unaln.bam 218829857 BAM S40_L002_R1 submitted_unaligned CPTAC3 ff79a027-2ce9-40fa-94df-0ed2f5c64634 06b85f37bf525ca583fc69b14d2dddcc {"aliquot_tag": "ALQ_5c6d4169", "sample": "S40", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.miRNA-Seq.T.hg38 C3N-02062 UCEC miRNA-Seq tumor CPT0134500009 fd53b506-4a84-447d-8499-189f4f4c1a3b_mirnaseq_gdc_realn.bam 254148082 BAM harmonized CPTAC3 0b46b752-b12b-4e89-971f-2e2e5561f0c2 4ef7c1e46e2673e31929062f8d7c4435 {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.chimeric.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.chimeric.gdc_realn.bam 40343779 BAM chimeric harmonized CPTAC3 445d3fca-3c66-48f7-97d1-6a33a0c01c52 a80518157a22637659322f7bada0c998 {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.chimeric.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.chimeric.gdc_realn.bam 174106963 BAM chimeric harmonized CPTAC3 e10869db-5455-4d06-b0bb-a5b3ff284b50 b72b3c118a6863f2a169c255334d086a {"aliquot_tag": "ALQ_a7366f9b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.genomic.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.genomic.gdc_realn.bam 9075751203 BAM genomic harmonized CPTAC3 e5d5753d-50d4-4a94-8f29-ab211c5f0149 3520250907af5f5d01ff8b19ec145300 {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.genomic.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.genomic.gdc_realn.bam 9833068853 BAM genomic harmonized CPTAC3 28e93d4e-e834-43ca-a2f7-bae4a66c739e a3579bcd584f4bc35bc7de72ef6b8431 {"aliquot_tag": "ALQ_a7366f9b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.S11_L006_R1.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R1_001.fastq.gz 4626237484 FASTQ S11_L006_R1 submitted_unaligned CPTAC3 5a79e76c-57d5-4946-8e5e-a93166527e5f 3728d1bcfbf2abadeb19343bd01ef286 {"aliquot_tag": "ALQ_5c6d4169", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.S11_L006_R2.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R2_001.fastq.gz 4772439781 FASTQ S11_L006_R2 submitted_unaligned CPTAC3 3e551f11-8ab1-45c5-bc56-a3c02f54a319 5b6e7dfae963ced092ad2c556e9af177 {"aliquot_tag": "ALQ_5c6d4169", "sample": "S11", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.S93_R1.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R1_001.fastq.gz 4606445718 FASTQ S93_R1 submitted_unaligned CPTAC3 e87d33d0-b7c4-45cc-9b59-f9304340653c c88ebc06bcdd8e129f6b1512709982b0 {"aliquot_tag": "ALQ_a7366f9b", "sample": "S93", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.S93_R2.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R2_001.fastq.gz 4759032552 FASTQ S93_R2 submitted_unaligned CPTAC3 ab791165-813a-4d98-bf6d-8c26e849beeb eae1014759cb40b9558e3be7e5ad76b6 {"aliquot_tag": "ALQ_a7366f9b", "sample": "S93", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.transcriptome.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.transcriptome.gdc_realn.bam 11924654707 BAM transcriptome harmonized CPTAC3 5b7ee737-7dbd-4dbd-9cf7-a37333068d82 1858a1f0aa3f954593d1754f4be8a2de {"aliquot_tag": "ALQ_5c6d4169", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.RNA-Seq.transcriptome.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.transcriptome.gdc_realn.bam 3809961853 BAM transcriptome harmonized CPTAC3 ffce9077-7d86-4efb-ba14-964228618bcd 19172a0e83d59dd4991347b0ae61a676 {"aliquot_tag": "ALQ_a7366f9b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.WGS.N C3N-02062 UCEC WGS blood_normal CPT0134600002 CPT0134600002.WholeGenome.RP-1303.bam 59085700359 BAM submitted_aligned CPTAC3 a21c36fd-7f91-4de9-87a1-44cb8327b198 d5d88cbce4bad583c87430113ca4f4b3 {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02062.WGS.N.hg38 C3N-02062 UCEC WGS blood_normal CPT0134600002 6897a033-cb98-4570-a39d-a8af68edbc71_wgs_gdc_realn.bam 84606898797 BAM harmonized CPTAC3 c76a1995-03d6-446f-a38a-1e77971bdf7d f4d2439af6c4d31d7903cfe1622fb1e8 {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02062.WGS.T C3N-02062 UCEC WGS tumor CPT0134500006 CPT0134500006.WholeGenome.RP-1303.bam 61155117727 BAM submitted_aligned CPTAC3 147556fc-3836-492c-b2a4-f1568030d4ac f73c10f2fa825c2e566d991c33083de7 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.WGS.T.hg38 C3N-02062 UCEC WGS tumor CPT0134500006 84904646-67d2-460c-8a61-fa1c5f3c6b25_wgs_gdc_realn.bam 88138507919 BAM harmonized CPTAC3 44d0feaf-38dc-41eb-9128-3143d86d270f 70dd98999ad7bf7cc6c0de9259496ed0 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.WXS.N C3N-02062 UCEC WXS blood_normal CPT0134600002 CPT0134600002.WholeExome.RP-1303.bam 27410997401 BAM submitted_aligned CPTAC3 f71340c4-8148-42c6-8e15-7ded491683ec 8c1b35f5b706b6b3fb7acc86639a0b6e {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02062.WXS.N.hg38 C3N-02062 UCEC WXS blood_normal CPT0134600002 6897a033-cb98-4570-a39d-a8af68edbc71_wxs_gdc_realn.bam 37356653112 BAM harmonized CPTAC3 d74ddc84-eac0-4d71-bba3-fae4cdb01049 8b86ba262eab051acac998ca9a125043 {"aliquot_tag": "ALQ_4d2bea4f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02062.WXS.T C3N-02062 UCEC WXS tumor CPT0134500006 CPT0134500006.WholeExome.RP-1303.bam 29356408797 BAM submitted_aligned CPTAC3 7649c86d-e35b-4af4-9619-f923f32916da 765720ac46a2c24528d95baf3d804aa6 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02062.WXS.T.hg38 C3N-02062 UCEC WXS tumor CPT0134500006 84904646-67d2-460c-8a61-fa1c5f3c6b25_wxs_gdc_realn.bam 40893500986 BAM harmonized CPTAC3 4f7a2ec0-6689-4707-9fd5-c73b12cbbe29 8788d9992225e77dc0af417b9a19f2d2 {"aliquot_tag": "ALQ_ccd25cf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02063.MethArray.Green.T C3N-02063 CCRCC Methylation_Array tumor CPT0134660009 203220070217_R01C01_Grn.idat 13676218 IDAT Green NA CPTAC3 32b879f9-8969-4821-8e6a-daa74f111f26 ff636b6dac02b60849f11337f2f998f3 {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.MethArray.Red.T C3N-02063 CCRCC Methylation_Array tumor CPT0134660009 203220070217_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 cbb7f277-6f79-4b27-9685-d7c156a4a190 b41a94ad6240b48ec5434e704505633c {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.miRNA-Seq.S44_L005_R1.T C3N-02063 CCRCC miRNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0176_AHYGLVBBXX_TATAAT_S44_L005_R1_001.unaln.bam 315506039 BAM S44_L005_R1 submitted_unaligned CPTAC3 454d9aec-e30a-4a5c-b383-87188a90fc95 9480a49d0d02eadd737bb68672c958d7 {"aliquot_tag": "ALQ_c506dbf6", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.miRNA-Seq.T.hg38 C3N-02063 CCRCC miRNA-Seq tumor CPT0134660006 aa4cc326-e3e2-4f20-a828-3ddbda711b5b_mirnaseq_gdc_realn.bam 341821843 BAM harmonized CPTAC3 80cffc8f-5b3c-4b2e-b302-65a1ae068209 44908e2494041107319a7d771a4568a5 {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.RNA-Seq.chimeric.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.chimeric.gdc_realn.bam 33795996 BAM chimeric harmonized CPTAC3 26f9a263-0ed1-445e-99df-e6ed29c85abc db3ab4d406da692f9215d9ab003b829b {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.RNA-Seq.genomic.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.genomic.gdc_realn.bam 7756371481 BAM genomic harmonized CPTAC3 32bfbf45-7e62-43a1-bc20-d0bc040b6bb7 5b54280125feead988df2bdac74e1645 {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.RNA-Seq.S24_L006_R1.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3595718305 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 f1ae4d68-825f-4b31-bd89-8f128807a19b 359f95d04276e7ed8d8674c7a42e798e {"aliquot_tag": "ALQ_c506dbf6", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.RNA-Seq.S24_L006_R2.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3734528789 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 622bc846-d713-469e-ad45-0c9c260f326a 6201d73b3f225dab0622a1c6a72e434a {"aliquot_tag": "ALQ_c506dbf6", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.RNA-Seq.transcriptome.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.transcriptome.gdc_realn.bam 9000648080 BAM transcriptome harmonized CPTAC3 b6243868-b729-4153-af4b-b8d7c8c87ead 4710e61a3c04bd09c2088781b8b2d32c {"aliquot_tag": "ALQ_c506dbf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.WGS.N C3N-02063 CCRCC WGS blood_normal CPT0134780002 CPT0134780002.WholeGenome.RP-1303.bam 59849497843 BAM submitted_aligned CPTAC3 2060bdad-4d06-444b-a567-c998651b2524 6fa44eb7e05a9875b1368a5ebeaaec74 {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02063.WGS.N.hg38 C3N-02063 CCRCC WGS blood_normal CPT0134780002 a3b6c6e3-bba9-4d7c-a614-67c80c0e2b04_wgs_gdc_realn.bam 86158367385 BAM harmonized CPTAC3 06d9ddce-c14d-470c-9fac-11081ff40e05 bb62f5333fc71783ac3a6a3d455d4d82 {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02063.WGS.T C3N-02063 CCRCC WGS tumor CPT0134660009 CPT0134660009.WholeGenome.RP-1303.bam 64493736731 BAM submitted_aligned CPTAC3 5137f70b-2111-48e9-b679-2011d55c54a0 9967bde81be1a22190d2ac289791f37c {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.WGS.T.hg38 C3N-02063 CCRCC WGS tumor CPT0134660009 2c36fd7e-7479-41e5-840f-d78ae22902b5_wgs_gdc_realn.bam 94603847775 BAM harmonized CPTAC3 393992e1-a70b-43e3-ae4d-4b5867723702 e7f2cad94788b0dcb180ec313c86a0c6 {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.WXS.N C3N-02063 CCRCC WXS blood_normal CPT0134780002 CPT0134780002.WholeExome.RP-1303.bam 22206028263 BAM submitted_aligned CPTAC3 1557e171-b0c5-4d99-9793-d74bf0d48a20 83fa179d31bf2ab5d363b35f7f26cefe {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02063.WXS.N.hg38 C3N-02063 CCRCC WXS blood_normal CPT0134780002 a3b6c6e3-bba9-4d7c-a614-67c80c0e2b04_wxs_gdc_realn.bam 31175755363 BAM harmonized CPTAC3 2bfb1d9d-a6e7-4bb2-961a-3f1e660b69e2 ad12c1df82c2cb6ebecba36f36bb3091 {"aliquot_tag": "ALQ_b607722b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02063.WXS.T C3N-02063 CCRCC WXS tumor CPT0134660009 CPT0134660009.WholeExome.RP-1303.bam 26466001149 BAM submitted_aligned CPTAC3 657a2f1a-b6f8-4976-aeaa-5a5f33f8a5f8 a280ea97b54ffb9f67a2e6a53e03914b {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02063.WXS.T.hg38 C3N-02063 CCRCC WXS tumor CPT0134660009 2c36fd7e-7479-41e5-840f-d78ae22902b5_wxs_gdc_realn.bam 36373993823 BAM harmonized CPTAC3 2ab7899c-9b15-49c0-87e9-74bc09e2a1f5 e6a3e7918385b9c1a01a61d98851fd08 {"aliquot_tag": "ALQ_55b9c667", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.MethArray.Green.A C3N-02066 CCRCC Methylation_Array tissue_normal CPT0109820006 204373100109_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 abc730ff-1b6d-4edf-9d70-ac1defc18489 ebf0c375868b8c7ffabe6b650e8833dd {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.MethArray.Green.T C3N-02066 CCRCC Methylation_Array tumor CPT0109800007 203219760081_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2dde2177-9e8b-46ad-86c1-9a663bf3af5e a63f0b49a7079c67f2d9076568e4de65 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.MethArray.Red.A C3N-02066 CCRCC Methylation_Array tissue_normal CPT0109820006 204373100109_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 e417a787-f611-4a32-9817-f1a5700fe3c0 df8bd8b2e1be9fbdc11f29ab348fd1a1 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.MethArray.Red.T C3N-02066 CCRCC Methylation_Array tumor CPT0109800007 203219760081_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 3a2f5db5-dfcf-45d6-8806-013a0d1028b2 636a5072851cfe3db7b198902c93b29c {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.miRNA-Seq.A.hg38 C3N-02066 CCRCC miRNA-Seq tissue_normal CPT0109820009 39eeaf7d-e667-4724-894f-62eb336643cf_mirnaseq_gdc_realn.bam 202289687 BAM harmonized CPTAC3 5daa3729-b81b-4201-97ae-c596b60af7c2 9c46d4652ba345efce88fc7ffd2f6d1c {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.miRNA-Seq.S2_L002_R1.A C3N-02066 CCRCC miRNA-Seq tissue_normal CPT0109820009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L002_R1_001.unaln.bam 184085575 BAM S2_L002_R1 submitted_unaligned CPTAC3 98c999d5-4161-4a67-b359-a5bc336f05d0 9b3c19f6bc83cc6b4efe04fc8bdcb20f {"aliquot_tag": "ALQ_756b67f4", "sample": "S2", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.miRNA-Seq.S7_L004_R1.T C3N-02066 CCRCC miRNA-Seq tumor CPT0109800010 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGATC_S7_L004_R1_001.unaln.bam 241275310 BAM S7_L004_R1 submitted_unaligned CPTAC3 d5cc6a00-a153-4e73-b5ad-e68b371c58fe 936fd2391f62e5718cbf1f3b9dc1e361 {"aliquot_tag": "ALQ_6f6cbd71", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.miRNA-Seq.T.hg38 C3N-02066 CCRCC miRNA-Seq tumor CPT0109800010 1cc7d171-3afa-4e0b-bda4-5dcc2a2e4d98_mirnaseq_gdc_realn.bam 269735036 BAM harmonized CPTAC3 ed6cf318-860a-4594-bc19-c6293b427e22 bbe3633722267b152dc54b3b46a0760b {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.RNA-Seq.chimeric.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.chimeric.gdc_realn.bam 398508975 BAM chimeric harmonized CPTAC3 614c51c9-0bec-494d-9dbc-614d3e12da2b fe1f21d1ece809123c28b13b0d017175 {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.RNA-Seq.chimeric.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.chimeric.gdc_realn.bam 106815192 BAM chimeric harmonized CPTAC3 0e58a688-536a-4e81-8c84-87ed678ecffd d2054923915f1036c4368b96bd93d21f {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.RNA-Seq.genomic.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.genomic.gdc_realn.bam 10160608975 BAM genomic harmonized CPTAC3 66e5a317-6078-4c0b-ab60-34adab28d825 319c70f0c91db924314cc490ed084b74 {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.RNA-Seq.genomic.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.genomic.gdc_realn.bam 9227660591 BAM genomic harmonized CPTAC3 12647113-0229-4fd1-920c-26a8160cff3c 60bb2fc3fc03e96322246a3b19e2e864 {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.RNA-Seq.S8_L002_R1.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4064161598 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 c9b71185-f490-458c-98ad-18c122843bf3 1279c1267d2961ad51cbf9134cc4074a {"aliquot_tag": "ALQ_6f6cbd71", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.RNA-Seq.S8_L002_R2.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4503879871 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 c2ebcef0-e7f2-44e9-918f-3d9840077bb5 fd453deb377cbab2da200a3aa32a4f77 {"aliquot_tag": "ALQ_6f6cbd71", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.RNA-Seq.S9_L003_R1.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R1_001.fastq.gz 4775006622 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 8db98bdf-d737-4598-abfa-f5cdcd19be9b 2ffc9f64d580e144eba8fb32daef7855 {"aliquot_tag": "ALQ_756b67f4", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.RNA-Seq.S9_L003_R2.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R2_001.fastq.gz 4764232251 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 2dec353f-c2ce-4d95-847d-1b9ebfcf5aeb 5ee5ee4ac9388370d201d7109940f905 {"aliquot_tag": "ALQ_756b67f4", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.RNA-Seq.transcriptome.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.transcriptome.gdc_realn.bam 11031612809 BAM transcriptome harmonized CPTAC3 41bf996b-0f7e-4aa3-bb21-e1d23cd821ce ea9425a363209c62c48d5c48b10a3f2b {"aliquot_tag": "ALQ_756b67f4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.RNA-Seq.transcriptome.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.transcriptome.gdc_realn.bam 10916545494 BAM transcriptome harmonized CPTAC3 efb343c7-9523-4463-b39a-a257b0a8b16d a44ef439c3d701f81f8294379d3797a2 {"aliquot_tag": "ALQ_6f6cbd71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.WGS.A C3N-02066 CCRCC WGS tissue_normal CPT0109820006 CPT0109820006.WholeGenome.RP-1303.bam 69597074763 BAM submitted_aligned CPTAC3 f0f8bacd-6081-44d7-aa16-8ed6aa57e4a4 98f388fef1aa076066cd449cd1a67ec2 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.WGS.A.hg38 C3N-02066 CCRCC WGS tissue_normal CPT0109820006 fb8b7ff5-89a3-4104-ba8c-ddc1ec7f4476_wgs_gdc_realn.bam 101804887550 BAM harmonized CPTAC3 da53f388-6e74-4f17-a68a-7b09de7c3d28 54da318024a1deb5db9b7e1cc435b184 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.WGS.N C3N-02066 CCRCC WGS blood_normal CPT0139350002 CPT0139350002.WholeGenome.RP-1303.bam 52326467938 BAM submitted_aligned CPTAC3 fb721a26-6d3e-41ac-aa74-45b71eb9bb52 ba3429187a3094091f19286d26520418 {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02066.WGS.N.hg38 C3N-02066 CCRCC WGS blood_normal CPT0139350002 283ad697-3688-4159-a0b7-8a12d6005948_wgs_gdc_realn.bam 77950068536 BAM harmonized CPTAC3 1a2d5cbf-5d6c-4cac-8a8c-57a040c7172e 9c5797b111818fde9b4e7ccecfb3f504 {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02066.WGS.T C3N-02066 CCRCC WGS tumor CPT0109800007 CPT0109800007.WholeGenome.RP-1303.bam 62198653665 BAM submitted_aligned CPTAC3 9505c7b3-b496-423e-b60f-bc0937493908 a5724a556a924b953408e8827dd71f49 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.WGS.T.hg38 C3N-02066 CCRCC WGS tumor CPT0109800007 10a9c495-e23e-4518-8e67-121fecde9e0c_wgs_gdc_realn.bam 91570025489 BAM harmonized CPTAC3 e9925d2b-6b0b-47fa-9ac1-e28c396b5642 002eb583d41c12a1a82ddfca6a7c3260 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.WXS.A C3N-02066 CCRCC WXS tissue_normal CPT0109820006 CPT0109820006.WholeExome.RP-1303.bam 27120357527 BAM submitted_aligned CPTAC3 a39e09ea-587c-4832-8386-d8403d04dc65 16a724754ed28bf8d3a38cd61ad3d57f {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.WXS.A.hg38 C3N-02066 CCRCC WXS tissue_normal CPT0109820006 fb8b7ff5-89a3-4104-ba8c-ddc1ec7f4476_wxs_gdc_realn.bam 37974421261 BAM harmonized CPTAC3 e18467f1-0748-4762-92cd-e3f57e3451d4 f2c3ae21e7cf2d910d434865b6d48938 {"aliquot_tag": "ALQ_e5d47a65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02066.WXS.N C3N-02066 CCRCC WXS blood_normal CPT0139350002 CPT0139350002.WholeExome.RP-1303.bam 26556995763 BAM submitted_aligned CPTAC3 7ec59cfa-16a6-4299-93ff-4c11605cc8af 03cbaf0aead8258cf80d6487b71cddde {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02066.WXS.N.hg38 C3N-02066 CCRCC WXS blood_normal CPT0139350002 283ad697-3688-4159-a0b7-8a12d6005948_wxs_gdc_realn.bam 36983883595 BAM harmonized CPTAC3 ea6d400f-2749-4388-b347-256d69e74e7e be3ad76a02ba07e28d970d12c7017fe8 {"aliquot_tag": "ALQ_b4d1954c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02066.WXS.T C3N-02066 CCRCC WXS tumor CPT0109800007 CPT0109800007.WholeExome.RP-1303.bam 20793505876 BAM submitted_aligned CPTAC3 924a363c-5407-428d-b395-73e2a114bcfa 0341ce66dc9d56ec5ae7347bf7cbbfcf {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02066.WXS.T.hg38 C3N-02066 CCRCC WXS tumor CPT0109800007 10a9c495-e23e-4518-8e67-121fecde9e0c_wxs_gdc_realn.bam 29003761446 BAM harmonized CPTAC3 c782a79f-43aa-4b06-94cb-7e23f1cdaae6 97d770f3204f7c294a8ffc561b57dc22 {"aliquot_tag": "ALQ_e8131993", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.MethArray.Green.A C3N-02067 LUAD Methylation_Array tissue_normal CPT0109850009 203219650004_R01C01_Grn.idat 13676222 IDAT Green NA CPTAC3 1971577f-5bb9-40e6-ba43-a494811cc30f 07151891aef91129c06fe267ffe3b489 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.MethArray.Green.T C3N-02067 LUAD Methylation_Array tumor CPT0109830010 203027390120_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9ec9139f-deca-40f9-865d-72699e8335bc 15802d7872dfff6ece4bd12a0fdd9631 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.MethArray.Red.A C3N-02067 LUAD Methylation_Array tissue_normal CPT0109850009 203219650004_R01C01_Red.idat 13676222 IDAT Red NA CPTAC3 b7b1b4fc-bb70-432d-86af-2c8f0e867438 c57fb3e13184bc9f90dda35f6ccaed96 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.MethArray.Red.T C3N-02067 LUAD Methylation_Array tumor CPT0109830010 203027390120_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 3f5a9a89-67d7-4cf7-a4ec-a66dc6a0aace 475bfbf16b0e3e9e56f1929792b3b72e {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.miRNA-Seq.A.hg38 C3N-02067 LUAD miRNA-Seq tissue_normal CPT0109850006 d366affc-225a-4b1c-acd8-c4177d3e88bc_mirnaseq_gdc_realn.bam 259661730 BAM harmonized CPTAC3 06a704f4-a1ef-44b5-bf20-1d5a4d35f54e a0d84853a9dbc3a5e9c52fb59f25e91e {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.miRNA-Seq.S1_L003_R1.A C3N-02067 LUAD miRNA-Seq tissue_normal CPT0109850006 181108_UNC31-K00269_0162_AH255GBBXY_ACTGAT_S1_L003_R1_001.unaln.bam 232346541 BAM S1_L003_R1 submitted_unaligned CPTAC3 3c394a6f-6144-402b-b114-87255e69b988 8c87abf6f264a7e72b94c13b547facf0 {"aliquot_tag": "ALQ_57f4a675", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.miRNA-Seq.S30_L004_R1.T C3N-02067 LUAD miRNA-Seq tumor CPT0109830007 181108_UNC31-K00269_0162_AH255GBBXY_GCCAAT_S30_L004_R1_001.unaln.bam 250333414 BAM S30_L004_R1 submitted_unaligned CPTAC3 73833fd3-9c74-4ee7-b64b-893ad0e4aca8 731cda86d7d3b0b14530a136dbf4de2f {"aliquot_tag": "ALQ_afb36343", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.miRNA-Seq.T.hg38 C3N-02067 LUAD miRNA-Seq tumor CPT0109830007 2019c6e7-4147-4944-a9d3-ca14a56c4d9c_mirnaseq_gdc_realn.bam 275375693 BAM harmonized CPTAC3 abb9eb5a-08b1-4f38-b69f-df7f6d4e2a73 51610573744dd2931669ffc23473f7a8 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.RNA-Seq.chimeric.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.chimeric.gdc_realn.bam 141009444 BAM chimeric harmonized CPTAC3 c5e66c40-566d-4969-b9f0-5913c8c992d7 595b6d417b08c85fe95077e45dac6458 {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.RNA-Seq.chimeric.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.chimeric.gdc_realn.bam 67702069 BAM chimeric harmonized CPTAC3 079442fd-26ae-4e5f-93a8-7040b0b02ec2 5cf2d1bf0cc57d308750956bf02a5089 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.RNA-Seq.genomic.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.genomic.gdc_realn.bam 9151936038 BAM genomic harmonized CPTAC3 0ba78390-3251-4355-99b0-a5e7a638d65c 990fa8895b052ace8690ed38173a8074 {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.RNA-Seq.genomic.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.genomic.gdc_realn.bam 9768901405 BAM genomic harmonized CPTAC3 18ec7d5c-d6f7-4489-ac06-3ab941e96dc1 b3a9be3d785285e1a1a47a3fa5211ca7 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.RNA-Seq.S3_L007_R1.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R1_001.fastq.gz 4539108482 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 96a4541d-fa4c-4bea-b0ed-a1c663dd3a35 a4f5f31dd2986875b30215f0f0199c69 {"aliquot_tag": "ALQ_afb36343", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.RNA-Seq.S3_L007_R2.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R2_001.fastq.gz 5032423844 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 04bd9cf5-9ecd-4d35-83ae-50f29cbb564e 490c049446c3fc593a0e4d9eb5438a94 {"aliquot_tag": "ALQ_afb36343", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.RNA-Seq.S5_L002_R1.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R1_001.fastq.gz 4459595695 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 6f623641-079d-4792-a52e-d6faa04c154d 8fab7106213123ee73555e10949385ff {"aliquot_tag": "ALQ_57f4a675", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.RNA-Seq.S5_L002_R2.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R2_001.fastq.gz 4463319322 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 9cc2a034-a8c0-4c4f-986c-73222649734b bdbf0b8ee74ea61c67c8e293c2079f27 {"aliquot_tag": "ALQ_57f4a675", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.RNA-Seq.transcriptome.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.transcriptome.gdc_realn.bam 10711282067 BAM transcriptome harmonized CPTAC3 061953ad-a475-49d5-ad7d-8deba9191cb2 9dc73fca520438551e7eaac208bae308 {"aliquot_tag": "ALQ_57f4a675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.RNA-Seq.transcriptome.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.transcriptome.gdc_realn.bam 13240096392 BAM transcriptome harmonized CPTAC3 f6c5e45a-088b-4784-8f30-18242e923f3b 3858638c93dea3fc89756b8a4e078e95 {"aliquot_tag": "ALQ_afb36343", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.WGS.A C3N-02067 LUAD WGS tissue_normal CPT0109850009 CPT0109850009.WholeGenome.RP-1303.bam 55482049007 BAM submitted_aligned CPTAC3 bf2b7e38-270b-4e0f-9ef5-147dc21d581b 70d9d6b73cad75ec8903ae1adde5cff5 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.WGS.A.hg38 C3N-02067 LUAD WGS tissue_normal CPT0109850009 fe44b42b-a442-442a-8306-17cb7c09becd_wgs_gdc_realn.bam 81060305027 BAM harmonized CPTAC3 765292a9-dbfe-4b64-8786-0d1d2c0780c6 53b213b2fcc70d71c59c1e2ff1b83259 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.WGS.N C3N-02067 LUAD WGS blood_normal CPT0139390002 CPT0139390002.WholeGenome.RP-1303.bam 53639498170 BAM submitted_aligned CPTAC3 b0eed8df-d140-45ba-8b71-f789b12a4ec7 56f84050b5cacf78901fdbbf13c17d35 {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02067.WGS.N.hg38 C3N-02067 LUAD WGS blood_normal CPT0139390002 f2a460fb-b9c4-4416-8eba-43f2262d9f69_wgs_gdc_realn.bam 77729417894 BAM harmonized CPTAC3 48a82c5e-f542-4065-9c59-0867897199dd 311e46650f5d2fd4fe0e0e15521b13a9 {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02067.WGS.T C3N-02067 LUAD WGS tumor CPT0109830010 CPT0109830010.WholeGenome.RP-1303.bam 57016240584 BAM submitted_aligned CPTAC3 2e937a78-b36d-46c3-a5f2-935170780ffe bff79c4a2fea63a154e112fd452af8c2 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.WGS.T.hg38 C3N-02067 LUAD WGS tumor CPT0109830010 93c2237d-c12e-435c-a1b0-97f6c59cccff_wgs_gdc_realn.bam 83631016035 BAM harmonized CPTAC3 f05ded8e-b053-4f0e-a4e3-51cbf2b4288f c37b6f3a049677b28cf84884833612a6 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.WXS.A C3N-02067 LUAD WXS tissue_normal CPT0109850009 CPT0109850009.WholeExome.RP-1303.bam 35454988645 BAM submitted_aligned CPTAC3 b7a59366-55df-4ecf-9dde-da54b6dbea9b 56548f94e0f2068b55278b17df14e893 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.WXS.A.hg38 C3N-02067 LUAD WXS tissue_normal CPT0109850009 fe44b42b-a442-442a-8306-17cb7c09becd_wxs_gdc_realn.bam 47376603238 BAM harmonized CPTAC3 c0bbd01b-1223-463d-a3cf-ded71121573f a3e588dcc6cb2e66137d33edd2692406 {"aliquot_tag": "ALQ_c74bbbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02067.WXS.N C3N-02067 LUAD WXS blood_normal CPT0139390002 CPT0139390002.WholeExome.RP-1303.bam 25010709644 BAM submitted_aligned CPTAC3 b08beb3e-1bdc-4800-9dc8-32e7896b1f21 9f6526ab506c2b998d44bca9e7bdefb4 {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02067.WXS.N.hg38 C3N-02067 LUAD WXS blood_normal CPT0139390002 f2a460fb-b9c4-4416-8eba-43f2262d9f69_wxs_gdc_realn.bam 33987543561 BAM harmonized CPTAC3 7b87637e-52bf-4ded-82a1-9c511c954953 7e58cafa46175f1fd50895589276a15f {"aliquot_tag": "ALQ_7121784d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02067.WXS.T C3N-02067 LUAD WXS tumor CPT0109830010 CPT0109830010.WholeExome.RP-1303.bam 33218172131 BAM submitted_aligned CPTAC3 1cd98d9c-22d4-42fd-9a6d-08969a07ba8a 5b8db0e301f1e941dc1058c0a30411cf {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02067.WXS.T.hg38 C3N-02067 LUAD WXS tumor CPT0109830010 93c2237d-c12e-435c-a1b0-97f6c59cccff_wxs_gdc_realn.bam 45467255428 BAM harmonized CPTAC3 63f87f84-4e24-44b4-9cf8-91a9fe5e3910 01988a7d4c78c6eec1bfc18b0ed033a8 {"aliquot_tag": "ALQ_28ccc7a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.MethArray.Green.T C3N-02068 CCRCC Methylation_Array tumor CPT0109860007 203219670122_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 27c9aaa0-2425-4a8d-9270-bb0f57f8b1f0 bbb0c3ebbde51ea6d141511ecd933243 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.MethArray.Red.T C3N-02068 CCRCC Methylation_Array tumor CPT0109860007 203219670122_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 cec573a6-b14e-49b1-8ead-3edd32f8cea9 5ae81cc182c0c8fce661670e4160da92 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.miRNA-Seq.S8_L004_R1.T C3N-02068 CCRCC miRNA-Seq tumor CPT0109860010 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTTGA_S8_L004_R1_001.unaln.bam 201640648 BAM S8_L004_R1 submitted_unaligned CPTAC3 fdafbe3f-1c0a-4a35-8b9e-68644e97db31 7a475b2ee17f014c435422bf2debecf5 {"aliquot_tag": "ALQ_e02c48d1", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.miRNA-Seq.T.hg38 C3N-02068 CCRCC miRNA-Seq tumor CPT0109860010 897b7147-b998-43c3-b20c-88852d808988_mirnaseq_gdc_realn.bam 225695151 BAM harmonized CPTAC3 2ba43caf-5a90-42a9-8ec6-906bb3124ca7 a667373fce8c70c6e9cd260f9c5e3280 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.RNA-Seq.chimeric.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.chimeric.gdc_realn.bam 101534025 BAM chimeric harmonized CPTAC3 4bdffe4e-27ba-4599-af79-17dd52d19f85 a1d9afef293398fa750a28cfbb34a4f3 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.RNA-Seq.genomic.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.genomic.gdc_realn.bam 8031259244 BAM genomic harmonized CPTAC3 b938a386-fcde-436b-b559-d2f336393d23 9efe480673b12abe47ee41adf7cc6645 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.RNA-Seq.S7_L002_R1.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3611242902 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 2a93bde3-82b9-4ea3-8e24-26d896e2e5d7 03da32bba9e01c1e91105cd0cea05ccd {"aliquot_tag": "ALQ_e02c48d1", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.RNA-Seq.S7_L002_R2.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3938541574 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 f313414c-ca3c-4d29-9bc1-e962ea516a3f b50d8551955c22e851fe77ed73de9923 {"aliquot_tag": "ALQ_e02c48d1", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.RNA-Seq.transcriptome.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.transcriptome.gdc_realn.bam 10015042958 BAM transcriptome harmonized CPTAC3 9754ba56-fa26-44f1-8dc7-351f24e2db8b 91c997d86ebbf8445ccc3eda242534e3 {"aliquot_tag": "ALQ_e02c48d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.WGS.N C3N-02068 CCRCC WGS blood_normal CPT0139430002 CPT0139430002.WholeGenome.RP-1303.bam 62216048242 BAM submitted_aligned CPTAC3 1b184e8c-6791-4306-a874-0151a9fffe7a 10098345073a2d0251ca43a8e11c26f8 {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02068.WGS.N.hg38 C3N-02068 CCRCC WGS blood_normal CPT0139430002 b4cccd0f-cb56-44fb-aa9f-e709ad21eebe_wgs_gdc_realn.bam 94723892634 BAM harmonized CPTAC3 4874805b-653c-41d3-9fc6-a666f66e8bfa b495ec37582d0b341b06ddebda9b840a {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02068.WGS.T C3N-02068 CCRCC WGS tumor CPT0109860007 CPT0109860007.WholeGenome.RP-1303.bam 56500497106 BAM submitted_aligned CPTAC3 b27086db-1d87-4bc6-9802-e56825109692 23e7f7378ee40d8434ef143ae6c5b715 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.WGS.T.hg38 C3N-02068 CCRCC WGS tumor CPT0109860007 b14374d2-a1ca-45a8-81db-d87747b98b56_wgs_gdc_realn.bam 84698272861 BAM harmonized CPTAC3 dab08691-5deb-4af6-8ef5-d5f114fb7d2e 36cae6df8db54131b2e717b7ecc1d630 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.WXS.N C3N-02068 CCRCC WXS blood_normal CPT0139430002 CPT0139430002.WholeExome.RP-1303.bam 28597796317 BAM submitted_aligned CPTAC3 f38de623-61ac-4e01-a840-44f044b3f13a ec5415b11e567f4077775d8d9b65514e {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02068.WXS.N.hg38 C3N-02068 CCRCC WXS blood_normal CPT0139430002 b4cccd0f-cb56-44fb-aa9f-e709ad21eebe_wxs_gdc_realn.bam 39746493661 BAM harmonized CPTAC3 d85c7679-6777-4f85-8f58-68c53c17a5f4 f37fe9060c5fd327d7937e8a0968b740 {"aliquot_tag": "ALQ_26945054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02068.WXS.T C3N-02068 CCRCC WXS tumor CPT0109860007 CPT0109860007.WholeExome.RP-1303.bam 25857230908 BAM submitted_aligned CPTAC3 6b5ce872-9b12-4b11-9564-ac12d7ec6a55 e3d4de0d46d277a9c1e54b65e49e321d {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02068.WXS.T.hg38 C3N-02068 CCRCC WXS tumor CPT0109860007 b14374d2-a1ca-45a8-81db-d87747b98b56_wxs_gdc_realn.bam 35673134829 BAM harmonized CPTAC3 a00391d6-22bb-4fe3-97cb-1853df74b673 0b89bbd1977212474ef97a6e0b8f6bd9 {"aliquot_tag": "ALQ_6753ec33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02069.MethArray.Green.T C3N-02069 PDA Methylation_Array tumor CPT0146130010 203219670118_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e838a2cb-8d2c-44f7-b385-42a896854d4a e1fd96f8f7ce8036fae64d49c26b9c73 {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.MethArray.Red.T C3N-02069 PDA Methylation_Array tumor CPT0146130010 203219670118_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5e7284d-f3db-4971-a6b2-2eef76ca8ff8 9c1bbdea590c2a70ecd6022f35104ab2 {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.miRNA-Seq.S10_L001_R1.T C3N-02069 PDA miRNA-Seq tumor CPT0146130007 181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L001_R1_001.unaln.bam 296336053 BAM S10_L001_R1 submitted_unaligned CPTAC3 9f4d5c3f-d5c3-4fd1-a450-1168fd87a70a 27414af3d5c991efeaeea7d16336e085 {"aliquot_tag": "ALQ_fabe4c98", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.miRNA-Seq.T.hg38 C3N-02069 PDA miRNA-Seq tumor CPT0146130007 7bfbb1fd-7e13-4907-93df-0211fe3afe4e_mirnaseq_gdc_realn.bam 322942729 BAM harmonized CPTAC3 fae904e6-8eed-439f-a142-c15b6eb478f8 0c35003e2146284b35e2a8efcb2742b3 {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.RNA-Seq.chimeric.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.chimeric.gdc_realn.bam 130572828 BAM chimeric harmonized CPTAC3 d05080e7-c8f9-4d89-8c84-375779d74fe6 00bc33b03b57ff48b3aa7b09093e71ae {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.RNA-Seq.genomic.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.genomic.gdc_realn.bam 10026920928 BAM genomic harmonized CPTAC3 383ea4ad-aa00-4e13-bc8b-c88cdba29942 7f6c728c76eae9f644639e00dfbc0c4d {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.RNA-Seq.S2_L006_R1.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4475908435 FASTQ S2_L006_R1 submitted_unaligned CPTAC3 a2b0c3e8-eb52-44b4-ae01-f1ca77ec00cd f85f5b522b10e5655422a9d55fda8603 {"aliquot_tag": "ALQ_fabe4c98", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.RNA-Seq.S2_L006_R2.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4983526900 FASTQ S2_L006_R2 submitted_unaligned CPTAC3 f502ecbb-c10e-40d0-b944-d5453bf7e1b1 96ccff3f63d32720c3576269e62161a3 {"aliquot_tag": "ALQ_fabe4c98", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.RNA-Seq.transcriptome.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.transcriptome.gdc_realn.bam 13309904214 BAM transcriptome harmonized CPTAC3 b791f00e-dffc-48c8-86fa-d546993dca10 f21c3deb7a26e73d015dba97e5418ede {"aliquot_tag": "ALQ_fabe4c98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WGS.N C3N-02069 PDA WGS blood_normal CPT0146150002 CPT0146150002.WholeGenome.RP-1303.bam 66487699939 BAM submitted_aligned CPTAC3 47d581f3-4bd7-4dc7-aadb-4ae095c8e5c5 afae6a98fb1c6552f46908b4574ba9b5 {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02069.WGS.N.hg38 C3N-02069 PDA WGS blood_normal CPT0146150002 a3341e64-192b-4ef2-b376-567aa5862025_wgs_gdc_realn.bam 97193991291 BAM harmonized CPTAC3 9c27493b-fef7-4c07-9a95-0fc68d75604c b301979f86035e083aa3cc3130b7d4d7 {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02069.WGS.T C3N-02069 PDA WGS tumor CPT0146130010_1 CPT0146130010_1.WholeGenome.RP-1303.bam 121225310601 BAM submitted_aligned CPTAC3 57f50f88-4241-4217-8b15-4c6ad3038fd0 c71ad262118515f7f24abc2f5f41094d {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WGS.T C3N-02069 PDA WGS tumor CPT0146130010 CPT0146130010.WholeGenome.RP-1303.bam 72004045661 BAM submitted_aligned CPTAC3 bfe79cd5-6ae6-4153-b470-296d24fd5f8d c01d4c67b29eed1e9be30dbeef71e37c {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WGS.T.hg38 C3N-02069 PDA WGS tumor CPT0146130010_1 a7720d75-cf5b-4d5a-8e2d-99dcbd125845_wgs_gdc_realn.bam 175939539225 BAM harmonized CPTAC3 fc6596b2-026f-4d30-b1f9-a2879480be23 eeee24dbb4a4d825488372264b6f7952 {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WGS.T.hg38 C3N-02069 PDA WGS tumor CPT0146130010 d68541ce-05ea-4c5e-aa19-a284aeb12410_wgs_gdc_realn.bam 105507520033 BAM harmonized CPTAC3 d6796c2f-44e7-4b04-9019-1143faabbac5 fbe567efb5f68971b1b4592723bec1c2 {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WXS.N C3N-02069 PDA WXS blood_normal CPT0146150002 CPT0146150002.WholeExome.RP-1303.bam 24494509627 BAM submitted_aligned CPTAC3 62efe7e8-9e20-4ff5-85b3-f5b2a9e37de3 86b518302f60d00d1fd67c1a3d0eb84c {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02069.WXS.N.hg38 C3N-02069 PDA WXS blood_normal CPT0146150002 a3341e64-192b-4ef2-b376-567aa5862025_wxs_gdc_realn.bam 33431995543 BAM harmonized CPTAC3 18842255-d0ef-4ecf-903b-33c1a1d26808 a410c71f904bdca35ebfe07c06197f83 {"aliquot_tag": "ALQ_5944db7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02069.WXS.T C3N-02069 PDA WXS tumor CPT0146130010_1 CPT0146130010_1.WholeExome.RP-1303.bam 50817531108 BAM submitted_aligned CPTAC3 63c7ff8b-b2d0-412f-827d-ac9778507c25 eb4e085e67a0613d8fd87d5dcd876a3b {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WXS.T C3N-02069 PDA WXS tumor CPT0146130010 CPT0146130010.WholeExome.RP-1303.bam 22775645034 BAM submitted_aligned CPTAC3 50d8adbd-0831-44a0-b3e9-3ffb2275ba04 81a96bb8972352ef2522026a85f9e87f {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WXS.T.hg38 C3N-02069 PDA WXS tumor CPT0146130010_1 a7720d75-cf5b-4d5a-8e2d-99dcbd125845_wxs_gdc_realn.bam 69692472390 BAM harmonized CPTAC3 e3e92639-3b7d-4bbc-bc45-c25331e9d386 8e5708465d7421676dd89caa62c12455 {"aliquot_tag": "ALQ_5625d5a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02069.WXS.T.hg38 C3N-02069 PDA WXS tumor CPT0146130010 d68541ce-05ea-4c5e-aa19-a284aeb12410_wxs_gdc_realn.bam 31370633080 BAM harmonized CPTAC3 66df412d-080f-4f39-a41d-6f2bbcb3abe5 7e2f686d8724ef9ae458332b32d1aa3f {"aliquot_tag": "ALQ_7dc1e87a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02070.MethArray.Green.A C3N-02070 CCRCC Methylation_Array tissue_normal CPT0109910006 204930630034_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a701de63-827f-489e-97bf-c3cb34e33b15 193b464436b30cc427b5306d6c1b0647 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.MethArray.Green.T C3N-02070 CCRCC Methylation_Array tumor CPT0109890007 203219650202_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a308613e-999c-4f6d-ab54-2d2576335e79 708d28c699c4321af94cc2aa3fb4f1ef {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.MethArray.Red.A C3N-02070 CCRCC Methylation_Array tissue_normal CPT0109910006 204930630034_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 1ee7c82f-bd6c-4e3b-bc1e-31698963fef5 c5005d8682f13494e167eef004d8e3f7 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.MethArray.Red.T C3N-02070 CCRCC Methylation_Array tumor CPT0109890007 203219650202_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 da3ef3e9-5521-4397-ad00-28359910995a be6bde36e795224599844c012a7806a7 {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.miRNA-Seq.A.hg38 C3N-02070 CCRCC miRNA-Seq tissue_normal CPT0109910009 5392ec85-37e4-48ab-b059-a221d1b01d13_mirnaseq_gdc_realn.bam 221284144 BAM harmonized CPTAC3 55c858e1-be93-4660-9635-c73e13ca0de7 4668d7e3efae3b979da94241580b0e46 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.miRNA-Seq.S3_L002_R1.A C3N-02070 CCRCC miRNA-Seq tissue_normal CPT0109910009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L002_R1_001.unaln.bam 203409875 BAM S3_L002_R1 submitted_unaligned CPTAC3 7503d61e-ea30-4f01-a78a-3c49e736d3f9 d499cbf60994bcfbaa837bfa29ae9e27 {"aliquot_tag": "ALQ_f997ce81", "sample": "S3", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.miRNA-Seq.S9_L004_R1.T C3N-02070 CCRCC miRNA-Seq tumor CPT0109890010 190108_UNC31-K00269_0176_AHYGLVBBXX_GATCAG_S9_L004_R1_001.unaln.bam 201795964 BAM S9_L004_R1 submitted_unaligned CPTAC3 ae99b986-0e1e-4104-8b39-6613a10aa123 70e53b145259484caa0cd2be678cd949 {"aliquot_tag": "ALQ_627cdf00", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.miRNA-Seq.T.hg38 C3N-02070 CCRCC miRNA-Seq tumor CPT0109890010 a3cb9f78-d40e-44ef-b40f-e6ab7beae54d_mirnaseq_gdc_realn.bam 222619495 BAM harmonized CPTAC3 55889853-aafe-4e99-8f31-25d9ccc9e89a 5dd9a2b8cedfd45642af7d681092b5a5 {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.RNA-Seq.chimeric.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.chimeric.gdc_realn.bam 193006535 BAM chimeric harmonized CPTAC3 4c01da73-d726-449b-bcad-f555d0a4ab21 eafd39882fd9ad36e3dd1c7a207a80a4 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.RNA-Seq.chimeric.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.chimeric.gdc_realn.bam 179757564 BAM chimeric harmonized CPTAC3 1c88da81-84df-4671-ba0b-e442149ca34f d4edc315bf584fa94bb1b3cdfbf7939e {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.RNA-Seq.genomic.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.genomic.gdc_realn.bam 8958277545 BAM genomic harmonized CPTAC3 6f282acc-e3ea-4831-ac36-ae7534799b96 6493ed69874eb4faa3242b99cd768314 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.RNA-Seq.genomic.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.genomic.gdc_realn.bam 7635931069 BAM genomic harmonized CPTAC3 0b886fed-16d8-49b7-a2d6-9e9481b184e4 6d570e4d769cd6bc87e2fffd4a3a0a6b {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.RNA-Seq.S11_L003_R1.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3993461279 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 c2a45e67-a032-4e26-80ba-ccb8e726bd85 5b83ee14848f72f547ccd20665077054 {"aliquot_tag": "ALQ_f997ce81", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.RNA-Seq.S11_L003_R2.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4284843965 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 f225ce40-ab64-4fd0-84b4-a723598426fb c2ec94adb5b587d2f8cbbf6c379bab0c {"aliquot_tag": "ALQ_f997ce81", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.RNA-Seq.S3_L001_R1.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3429739960 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 ba480a0e-f178-499d-b6c4-bb416664dedf 4a76a576fb52f4e1cb176a02782731bd {"aliquot_tag": "ALQ_627cdf00", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.RNA-Seq.S3_L001_R2.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3936538065 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 cb664dbd-e3ff-480d-9c73-8ae4086789ce e012aaa1e1dbfb0ab848ccb2ec599b39 {"aliquot_tag": "ALQ_627cdf00", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.RNA-Seq.transcriptome.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.transcriptome.gdc_realn.bam 9590772808 BAM transcriptome harmonized CPTAC3 2a4f57af-cf90-4907-87e6-f27cb2317170 ab3833140c0e040a899e8133f9072170 {"aliquot_tag": "ALQ_f997ce81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.RNA-Seq.transcriptome.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.transcriptome.gdc_realn.bam 9331404926 BAM transcriptome harmonized CPTAC3 87fe8ab9-14ad-4161-a956-0a598de18f16 238f350f0deddc8ce695eada815672cf {"aliquot_tag": "ALQ_627cdf00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.WGS.A C3N-02070 CCRCC WGS tissue_normal CPT0109910006 CPT0109910006.WholeGenome.RP-1303.bam 67858578812 BAM submitted_aligned CPTAC3 db0348c9-48c6-4abe-9f76-11d5e2e01d4a 9445362e54d43164cc35230ae497d3a3 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.WGS.A.hg38 C3N-02070 CCRCC WGS tissue_normal CPT0109910006 dc2ed23b-fb44-4015-9e67-8d77da23efbf_wgs_gdc_realn.bam 100395086788 BAM harmonized CPTAC3 4e67166c-6242-4142-82c9-ef16af4f9e23 865aa5edcaae8cb812e79497b0fb9eb6 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.WGS.N C3N-02070 CCRCC WGS blood_normal CPT0146220002 CPT0146220002.WholeGenome.RP-1303.bam 58917489490 BAM submitted_aligned CPTAC3 1e786228-e432-4198-b49e-67b926343d0c c00b54d0cd031adef049338deab9c791 {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02070.WGS.N.hg38 C3N-02070 CCRCC WGS blood_normal CPT0146220002 123e488b-2d6f-4660-9ec1-1f9d5d6de82b_wgs_gdc_realn.bam 86649092302 BAM harmonized CPTAC3 d5cb1382-76b4-4e8f-89bf-3ff7ec3d693f 4b0cd7412df6f4f2c3a52d82794fdd12 {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02070.WGS.T C3N-02070 CCRCC WGS tumor CPT0109890007 CPT0109890007.WholeGenome.RP-1303.bam 68660018220 BAM submitted_aligned CPTAC3 6d5e15cd-8fe9-451d-b805-5d60249e217f 6e9c7559ff208426bee13824a4f35fdd {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.WGS.T.hg38 C3N-02070 CCRCC WGS tumor CPT0109890007 16d98f7c-5f39-45b4-b6b5-9d719e406c8c_wgs_gdc_realn.bam 99230298171 BAM harmonized CPTAC3 f5f7002b-9cb8-46dc-adaa-0ffd9ab9d595 d632c7399c053ac4bad1334a318d8551 {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.WXS.A C3N-02070 CCRCC WXS tissue_normal CPT0109910006 CPT0109910006.WholeExome.RP-1303.bam 21425511765 BAM submitted_aligned CPTAC3 d97bda3d-02b6-4f9c-aa24-43f2ae178b68 af6082d442b06ed02ade88ae6e910910 {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.WXS.A.hg38 C3N-02070 CCRCC WXS tissue_normal CPT0109910006 dc2ed23b-fb44-4015-9e67-8d77da23efbf_wxs_gdc_realn.bam 30480488036 BAM harmonized CPTAC3 a26fe05f-e518-4865-878a-780905366f2e 0dfd5de9a6980343abeee9b5c9dba15c {"aliquot_tag": "ALQ_6928d310", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02070.WXS.N C3N-02070 CCRCC WXS blood_normal CPT0146220002 CPT0146220002.WholeExome.RP-1303.bam 25600672747 BAM submitted_aligned CPTAC3 145b2a1e-086a-41da-a319-371b82e18e13 eb1ea34538a970d45ab9c8f212d3e1bf {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02070.WXS.N.hg38 C3N-02070 CCRCC WXS blood_normal CPT0146220002 123e488b-2d6f-4660-9ec1-1f9d5d6de82b_wxs_gdc_realn.bam 35667365530 BAM harmonized CPTAC3 67d0597f-adbe-47a8-8999-1ef6c6333976 1827d5c8e41c649b4dbeac4b4bd0f3b0 {"aliquot_tag": "ALQ_3120e309", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02070.WXS.T C3N-02070 CCRCC WXS tumor CPT0109890007 CPT0109890007.WholeExome.RP-1303.bam 19428254334 BAM submitted_aligned CPTAC3 2c415c32-7bb2-4c64-9d9f-66b4acc884fc 82eb2be5de8c236ef7f343d4ed29911c {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02070.WXS.T.hg38 C3N-02070 CCRCC WXS tumor CPT0109890007 16d98f7c-5f39-45b4-b6b5-9d719e406c8c_wxs_gdc_realn.bam 26763509742 BAM harmonized CPTAC3 d3951eb4-d8fc-4454-996e-393fa8e92ba6 d133ae77558d33c9cbc0a5f3478c492f {"aliquot_tag": "ALQ_e5037be2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.MethArray.Green.A C3N-02082 CCRCC Methylation_Array tissue_normal CPT0109940006 204373100108_R08C01_Grn.idat 13677950 IDAT Green NA CPTAC3 3c945842-38e2-457f-8733-d508202e450e ae55853f65bc296446c3e45691c219f0 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.MethArray.Green.T C3N-02082 CCRCC Methylation_Array tumor CPT0109920007 203219670141_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 aec99e7f-ebcd-42f5-b582-0bff51fec738 234348e0d2d2198ed68289386536145c {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.MethArray.Red.A C3N-02082 CCRCC Methylation_Array tissue_normal CPT0109940006 204373100108_R08C01_Red.idat 13677950 IDAT Red NA CPTAC3 d7547896-fa44-4552-a82a-46cfb727099e e8859b070e80b304e7f56cdbe6595424 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.MethArray.Red.T C3N-02082 CCRCC Methylation_Array tumor CPT0109920007 203219670141_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 36f8908a-0e5e-40cd-81d9-51ebb23c767a a8ce091f1588d476d9d265af18034dc4 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.miRNA-Seq.A.hg38 C3N-02082 CCRCC miRNA-Seq tissue_normal CPT0109940009 cad16176-512d-4ff2-ac70-2068519e7623_mirnaseq_gdc_realn.bam 287218308 BAM harmonized CPTAC3 0451e369-a8a6-4cbb-a5b5-22e163a57dc1 571a4352bc562cd03eedbb6bb534b0ef {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.miRNA-Seq.S10_L004_R1.T C3N-02082 CCRCC miRNA-Seq tumor CPT0109920010 190108_UNC31-K00269_0176_AHYGLVBBXX_TAGCTT_S10_L004_R1_001.unaln.bam 220316365 BAM S10_L004_R1 submitted_unaligned CPTAC3 d4b3bba8-a429-4c6b-851b-1d775f94d0f3 319fdd1c7d53558af585d6aa5b144daa {"aliquot_tag": "ALQ_def03db4", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.miRNA-Seq.S11_L002_R1.A C3N-02082 CCRCC miRNA-Seq tissue_normal CPT0109940009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L002_R1_001.unaln.bam 266676227 BAM S11_L002_R1 submitted_unaligned CPTAC3 bcecd69b-4989-4bbe-8085-038335ca6f4c a6e90ad1874a50a3428a5691c065721d {"aliquot_tag": "ALQ_317741f1", "sample": "S11", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.miRNA-Seq.T.hg38 C3N-02082 CCRCC miRNA-Seq tumor CPT0109920010 533b0c00-69e3-44ad-8068-c74bff080b21_mirnaseq_gdc_realn.bam 244682352 BAM harmonized CPTAC3 1caa50c8-3a27-4619-b4b5-9ccf69c0c6a1 37bc809b8b56e8ae9f75d6873e372881 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.RNA-Seq.chimeric.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.chimeric.gdc_realn.bam 185433322 BAM chimeric harmonized CPTAC3 9e370460-c250-4d11-ae8c-59850153a5c1 5f45bba4f1ddbc8f214e0e7a70f5cd12 {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.RNA-Seq.chimeric.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.chimeric.gdc_realn.bam 199037957 BAM chimeric harmonized CPTAC3 a1e9954e-be6b-4b86-bbd2-2d08c9bd2130 4c17a260b7dd337a8af0a3bf8fd9e278 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.RNA-Seq.genomic.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.genomic.gdc_realn.bam 10438661761 BAM genomic harmonized CPTAC3 1ea99483-1fdb-4fbc-b692-a314162505c9 ffff6c4a55a8d59792a97fb40b9cd6bf {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.RNA-Seq.genomic.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.genomic.gdc_realn.bam 8543050840 BAM genomic harmonized CPTAC3 01026c57-206d-49c7-9864-b5b588a09ca2 c8c01f606185187f936c0e1575efe1b3 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.RNA-Seq.S2_L001_R1.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3654677904 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 705ed781-5a2a-4c96-b505-b240ea717e62 c03b81a40ecaeb4ab3d4d8d8b86f7b49 {"aliquot_tag": "ALQ_def03db4", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.RNA-Seq.S2_L001_R2.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4154102334 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 ef3f6457-1a5d-4b4d-b0dd-56224d5812e7 1a9344d6aacbe6eb2f814d1e6b7c948b {"aliquot_tag": "ALQ_def03db4", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.RNA-Seq.S2_L005_R1.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R1_001.fastq.gz 4855832251 FASTQ S2_L005_R1 submitted_unaligned CPTAC3 be698259-9bae-4d74-b999-c429333679a3 91c19e93af5ee11340d58a011009cf20 {"aliquot_tag": "ALQ_317741f1", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.RNA-Seq.S2_L005_R2.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R2_001.fastq.gz 5461139177 FASTQ S2_L005_R2 submitted_unaligned CPTAC3 7ce94448-d41c-44eb-bc85-e5539ce59d24 7e23ed39c3fd17a1b8c19c160b1a9d90 {"aliquot_tag": "ALQ_317741f1", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.RNA-Seq.transcriptome.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.transcriptome.gdc_realn.bam 12532876205 BAM transcriptome harmonized CPTAC3 329921d6-3546-4174-b66f-4ace57fdb206 7cc47dcc3aa170124d00e40acbc032eb {"aliquot_tag": "ALQ_317741f1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.RNA-Seq.transcriptome.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.transcriptome.gdc_realn.bam 10225432167 BAM transcriptome harmonized CPTAC3 49506eb3-9885-459b-b854-50a8d968a169 d35cf47b4bfb0d8893d75155da830c61 {"aliquot_tag": "ALQ_def03db4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.WGS.A C3N-02082 CCRCC WGS tissue_normal CPT0109940006 CPT0109940006.WholeGenome.RP-1303.bam 62883739252 BAM submitted_aligned CPTAC3 6e70a4c8-3d4e-4ccc-819a-389d8df4f56b 6021e36db1300387547d5dd989e14872 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.WGS.A.hg38 C3N-02082 CCRCC WGS tissue_normal CPT0109940006 8e48b378-88aa-48f5-a10f-06b77a827e48_wgs_gdc_realn.bam 91508757986 BAM harmonized CPTAC3 7c799536-8976-4302-94a2-211916be4dfd 71ca343e3d6699428239bae5ec7fe811 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.WGS.N C3N-02082 CCRCC WGS blood_normal CPT0146260002 CPT0146260002.WholeGenome.RP-1303.bam 55733994847 BAM submitted_aligned CPTAC3 7843627f-a7c6-4e4e-927a-6ca4838e471b 87b7e2aebe54baf5b226b0bd52c22602 {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02082.WGS.N.hg38 C3N-02082 CCRCC WGS blood_normal CPT0146260002 8a383b2d-4851-4a69-b2f1-437b2d2f1012_wgs_gdc_realn.bam 81207194202 BAM harmonized CPTAC3 3117feae-c406-40b2-8f25-e27bbda8edd6 9f4fad397b333dbe999fe08a25b8b354 {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02082.WGS.T C3N-02082 CCRCC WGS tumor CPT0109920007 CPT0109920007.WholeGenome.RP-1303.bam 56521905101 BAM submitted_aligned CPTAC3 f501bcff-3db0-4c4e-9550-462f9db07592 f2da8e95c3ec3b38b774a82df7650734 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.WGS.T.hg38 C3N-02082 CCRCC WGS tumor CPT0109920007 3d1fdc85-55b2-4761-a1c5-4626d8281bad_wgs_gdc_realn.bam 82875276240 BAM harmonized CPTAC3 64ee9d1a-863b-4b20-b068-6fb32479f036 44ddf0e09e7e7a2960436e2844a9011c {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.WXS.A C3N-02082 CCRCC WXS tissue_normal CPT0109940006 CPT0109940006.WholeExome.RP-1303.bam 22450572325 BAM submitted_aligned CPTAC3 86946eab-49a8-48a6-8934-924af2286174 a61b5b6d0b87ab6d3bde3beb79c337b3 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.WXS.A.hg38 C3N-02082 CCRCC WXS tissue_normal CPT0109940006 8e48b378-88aa-48f5-a10f-06b77a827e48_wxs_gdc_realn.bam 30894585617 BAM harmonized CPTAC3 a3fe912f-90fe-4b61-b48d-34ee8759957a 016d8e55857d2ed602cfe4f0205d3d48 {"aliquot_tag": "ALQ_a1c85c60", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02082.WXS.N C3N-02082 CCRCC WXS blood_normal CPT0146260002 CPT0146260002.WholeExome.RP-1303.bam 22472247944 BAM submitted_aligned CPTAC3 5535e3ed-d09d-4433-bfca-5b232f90c449 1618bf06dbba3767d6a67b07e462f58a {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02082.WXS.N.hg38 C3N-02082 CCRCC WXS blood_normal CPT0146260002 8a383b2d-4851-4a69-b2f1-437b2d2f1012_wxs_gdc_realn.bam 30719750547 BAM harmonized CPTAC3 92180a7f-105f-4bbf-981f-daf3afd6ec14 e75e99b444a2d09721a133b9a8455062 {"aliquot_tag": "ALQ_c4a045c9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02082.WXS.T C3N-02082 CCRCC WXS tumor CPT0109920007 CPT0109920007.WholeExome.RP-1303.bam 27228105645 BAM submitted_aligned CPTAC3 ce38f8e6-5457-4621-9b93-8f47b5ab425f d9bcee437287767f1edece2db3826511 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02082.WXS.T.hg38 C3N-02082 CCRCC WXS tumor CPT0109920007 3d1fdc85-55b2-4761-a1c5-4626d8281bad_wxs_gdc_realn.bam 37931643632 BAM harmonized CPTAC3 658dbec0-6a18-4386-9184-1f1fcc894507 7f9514c437e12d0e7c61557d1a195401 {"aliquot_tag": "ALQ_598f9956", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.MethArray.Green.T C3N-02084 CCRCC Methylation_Array tumor CPT0109950007 203219650211_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 d38403f5-ae26-49b5-a112-9e7718bed1a7 f73de7535f3220cdf1eefc8641fac413 {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.MethArray.Red.T C3N-02084 CCRCC Methylation_Array tumor CPT0109950007 203219650211_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 585d4750-7441-4589-a967-056494839fd1 1a838be2d00672350d15076a9aa940d2 {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.miRNA-Seq.A.hg38 C3N-02084 CCRCC miRNA-Seq tissue_normal CPT0109970006 b635b134-e4be-47ce-be31-526a62b45814_mirnaseq_gdc_realn.bam 239623594 BAM harmonized CPTAC3 f83ce38b-2fc2-44cd-9c20-67eef12a3173 b9cbe6eb9691552b66b969b1825b9219 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02084.miRNA-Seq.S12_L002_R1.A C3N-02084 CCRCC miRNA-Seq tissue_normal CPT0109970006 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L002_R1_001.unaln.bam 218468822 BAM S12_L002_R1 submitted_unaligned CPTAC3 f1e84b64-7c19-4d86-abf8-f3e370dbdb56 1a7b2242e7fa1e992a487ac2a6b20a27 {"aliquot_tag": "ALQ_e66826b0", "sample": "S12", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02084.miRNA-Seq.S40_L003_R1.T C3N-02084 CCRCC miRNA-Seq tumor CPT0109950010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTCAGA_S40_L003_R1_001.unaln.bam 243840113 BAM S40_L003_R1 submitted_unaligned CPTAC3 a08fa66d-18aa-4073-a047-7e6fe1406eb0 7324f981a2eca7ad8593b289868521d8 {"aliquot_tag": "ALQ_6cd0e1a4", "sample": "S40", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.miRNA-Seq.T.hg38 C3N-02084 CCRCC miRNA-Seq tumor CPT0109950010 ce1f0948-69b9-450f-9038-5ecacd11511f_mirnaseq_gdc_realn.bam 270956514 BAM harmonized CPTAC3 76729f91-930e-4139-9d0e-09aa0a2b6206 ef4649361ce3f385ae9116fcc277c63c {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.RNA-Seq.chimeric.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.chimeric.gdc_realn.bam 92738561 BAM chimeric harmonized CPTAC3 ca324daf-fb75-4bad-913c-428eb1363888 0d790121375ed3cd4ec53102a8b96059 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02084.RNA-Seq.chimeric.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.chimeric.gdc_realn.bam 37900263 BAM chimeric harmonized CPTAC3 daeee1eb-90a4-485f-9859-cf35a44d35d0 18c8af0006b87480361063e8f8dd231f {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.RNA-Seq.genomic.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.genomic.gdc_realn.bam 7916728025 BAM genomic harmonized CPTAC3 b78e38a8-f31e-4eed-bf15-91821626655a 692460c42d0ce50087e4fba891fbf010 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02084.RNA-Seq.genomic.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.genomic.gdc_realn.bam 9646168734 BAM genomic harmonized CPTAC3 3472bff9-62ab-4962-95ee-49bab2befc9e f878feb6ef8f4e03bbe3ee5118ee4838 {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.RNA-Seq.S1_L005_R1.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R1_001.fastq.gz 3569917919 FASTQ S1_L005_R1 submitted_unaligned CPTAC3 16b913d0-3f43-4f74-b229-f9ad8a1baf73 206b6549d2bcacfeaab8f578f03043d0 {"aliquot_tag": "ALQ_e66826b0", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02084.RNA-Seq.S1_L005_R2.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R2_001.fastq.gz 4061013317 FASTQ S1_L005_R2 submitted_unaligned CPTAC3 8b3f0a4f-6e07-4f26-80fa-6fe6714a4f05 9da9703a1e1c4b73ccbae1bb24e45190 {"aliquot_tag": "ALQ_e66826b0", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02084.RNA-Seq.S4_L001_R1.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R1_001.fastq.gz 4604187532 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 dd540f67-bb54-4f83-81e4-643bab062cc6 d55e62b42f0ac95895f6d1c07425c974 {"aliquot_tag": "ALQ_6cd0e1a4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.RNA-Seq.S4_L001_R2.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R2_001.fastq.gz 4697965186 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 82d40117-4569-49fb-9a79-c6479446355e c481cf01ab876e011d8b26dd136e8670 {"aliquot_tag": "ALQ_6cd0e1a4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.RNA-Seq.transcriptome.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.transcriptome.gdc_realn.bam 9183138847 BAM transcriptome harmonized CPTAC3 8e37e383-2bca-4418-94cf-b9a1962ed934 496a9ec50f9fe2d5cceabda218895e25 {"aliquot_tag": "ALQ_e66826b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02084.RNA-Seq.transcriptome.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.transcriptome.gdc_realn.bam 12390321067 BAM transcriptome harmonized CPTAC3 3143f3a0-7564-4d01-9c75-a1fa02e6d0fa 8d5a3f4508965b1dae5e3f0c9d6d5931 {"aliquot_tag": "ALQ_6cd0e1a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.WGS.N C3N-02084 CCRCC WGS blood_normal CPT0146300002 CPT0146300002.WholeGenome.RP-1303.bam 63788369068 BAM submitted_aligned CPTAC3 6fe98032-2d04-47f6-aac7-de76c09dcbb3 c2bc3697ac5b92a4184c5dc43d7eb622 {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02084.WGS.N.hg38 C3N-02084 CCRCC WGS blood_normal CPT0146300002 0052b10f-fcc4-4d9b-b6c0-4af66673b043_wgs_gdc_realn.bam 93407439962 BAM harmonized CPTAC3 87142a1c-0651-46f8-8292-823e39f28bf9 1c78d41595dbe2794fa01d717a33b8ab {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02084.WGS.T C3N-02084 CCRCC WGS tumor CPT0109950007 CPT0109950007.WholeGenome.RP-1303.bam 61247226513 BAM submitted_aligned CPTAC3 3b509c21-da48-44b4-98cb-2453f4bbc8fa 1f9583d6b99a81e6acba3efb9a921b5f {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.WGS.T.hg38 C3N-02084 CCRCC WGS tumor CPT0109950007 fc7d756e-eca7-46e7-af28-e0987dfcffec_wgs_gdc_realn.bam 92389798988 BAM harmonized CPTAC3 37705716-ec12-4d49-89ec-a3b467f64385 25a0c46895d28e341720192da449d25d {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.WXS.N C3N-02084 CCRCC WXS blood_normal CPT0146300002 CPT0146300002.WholeExome.RP-1303.bam 24885554335 BAM submitted_aligned CPTAC3 8570fc0d-bc8c-4304-84b0-fc5f501b386e ee643e331eb6cbdb20b121707df0f9d9 {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02084.WXS.N.hg38 C3N-02084 CCRCC WXS blood_normal CPT0146300002 0052b10f-fcc4-4d9b-b6c0-4af66673b043_wxs_gdc_realn.bam 34557773930 BAM harmonized CPTAC3 f71a8b26-6890-452f-9e2b-9065a362da96 92c7c8cae45d5e6beed4bda58a775e8f {"aliquot_tag": "ALQ_80bc63cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02084.WXS.T C3N-02084 CCRCC WXS tumor CPT0109950007 CPT0109950007.WholeExome.RP-1303.bam 23671696272 BAM submitted_aligned CPTAC3 5f35288d-7ea2-4dac-a0d6-0a44198066cf 93f908d7098a7f29b9f91267c5f9c5be {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02084.WXS.T.hg38 C3N-02084 CCRCC WXS tumor CPT0109950007 fc7d756e-eca7-46e7-af28-e0987dfcffec_wxs_gdc_realn.bam 32135836258 BAM harmonized CPTAC3 780580e0-d3d4-4312-8dec-a7c0eac6382d dd7e94f582ef5595e8c0b3a27f0d8e2c {"aliquot_tag": "ALQ_ebaf4546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.MethArray.Green.T C3N-02085 CCRCC Methylation_Array tumor CPT0109980007 203219650065_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fb695b34-889e-4bf2-85d4-6f06ad68b403 a6e6a098c2498ff6704316e9719d1851 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.MethArray.Red.T C3N-02085 CCRCC Methylation_Array tumor CPT0109980007 203219650065_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ca56c05-7821-4b39-a7e9-6c5b448cd5fe 8e8b3b654b50b395c9f9d746791386a6 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.miRNA-Seq.S5_L004_R1.T C3N-02085 CCRCC miRNA-Seq tumor CPT0109980010 190108_UNC31-K00269_0176_AHYGLVBBXX_ACAGTG_S5_L004_R1_001.unaln.bam 203619636 BAM S5_L004_R1 submitted_unaligned CPTAC3 e92b27ea-d0a1-401a-a201-5957266d0c8e b1b40514b5a3bad36fe8c7ef898221c0 {"aliquot_tag": "ALQ_94402515", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.miRNA-Seq.T.hg38 C3N-02085 CCRCC miRNA-Seq tumor CPT0109980010 298c2a3a-5721-4bf8-9ae7-2d2304c4202d_mirnaseq_gdc_realn.bam 224693915 BAM harmonized CPTAC3 c7b9c7ab-7e72-4479-b3aa-16b019181a3e 311dbff37acb96d9ac63111623427bbb {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.RNA-Seq.chimeric.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.chimeric.gdc_realn.bam 86671093 BAM chimeric harmonized CPTAC3 8d0d1c06-bdf6-4782-ab55-d24033f413b5 c3985d51a6536b585648b5655b410c07 {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.RNA-Seq.genomic.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.genomic.gdc_realn.bam 7778517202 BAM genomic harmonized CPTAC3 58f3d230-4ebd-4d62-b8e4-9da15f438f20 d9eff04190989b7b6c280af4a8084910 {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.RNA-Seq.S5_L002_R1.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3585236660 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 e4c95dc0-61f0-48fd-b9ed-5933a0abe579 174246f310cf059b9c73846aa4181c59 {"aliquot_tag": "ALQ_94402515", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.RNA-Seq.S5_L002_R2.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4032516129 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 c7482138-2a11-466d-84bf-bdfa9115286d 0055f70fa1544ad25f457f6f6d20c17f {"aliquot_tag": "ALQ_94402515", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.RNA-Seq.transcriptome.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.transcriptome.gdc_realn.bam 9175876786 BAM transcriptome harmonized CPTAC3 7ccb1742-cf72-4094-b0a4-95cb7c2b4bf1 dbeb4b28baf439e11c110b81b707ebf8 {"aliquot_tag": "ALQ_94402515", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.WGS.N C3N-02085 CCRCC WGS blood_normal CPT0146340002 CPT0146340002.WholeGenome.RP-1303.bam 59224158033 BAM submitted_aligned CPTAC3 b50ffe6c-9b6d-455c-9c24-e183185e0821 8dc582f49d87f476c81506766515ad03 {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02085.WGS.N.hg38 C3N-02085 CCRCC WGS blood_normal CPT0146340002 1daa8e7e-a212-4407-9687-f589a8ad6680_wgs_gdc_realn.bam 85660629219 BAM harmonized CPTAC3 f3df1eb7-e0d3-4a70-9e29-5c588369c2e0 85bb091d6cf9611f9acbb471e13f2993 {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02085.WGS.T C3N-02085 CCRCC WGS tumor CPT0109980007 CPT0109980007.WholeGenome.RP-1303.bam 64233555307 BAM submitted_aligned CPTAC3 7e474663-cabd-4f08-bbd3-9be4d428d2a3 094f154dd0650e0ab0229891501fa88a {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.WGS.T.hg38 C3N-02085 CCRCC WGS tumor CPT0109980007 ef04fd99-79e1-437a-9843-53dec4a298f0_wgs_gdc_realn.bam 95145315636 BAM harmonized CPTAC3 f1fbb9fd-471d-4901-b20a-78619b5939fc a945bd57565bf7cfdd89f3bbbd69952e {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.WXS.N C3N-02085 CCRCC WXS blood_normal CPT0146340002 CPT0146340002.WholeExome.RP-1303.bam 16700952688 BAM submitted_aligned CPTAC3 03387211-7369-4693-8b2f-43b065a10e5f e7340438a918c856269c90b0a35f517f {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02085.WXS.N.hg38 C3N-02085 CCRCC WXS blood_normal CPT0146340002 1daa8e7e-a212-4407-9687-f589a8ad6680_wxs_gdc_realn.bam 23021032827 BAM harmonized CPTAC3 64836817-1ec8-441f-9281-8040ac53fcfe bb56edb9dc631c461cc7bd4653985dea {"aliquot_tag": "ALQ_753cc50c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02085.WXS.T C3N-02085 CCRCC WXS tumor CPT0109980007 CPT0109980007.WholeExome.RP-1303.bam 20902064321 BAM submitted_aligned CPTAC3 b8fe2dd0-6544-4064-83bf-787f80d82a71 a1aa0f2d05dc3ccd13213eb5f01bced5 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02085.WXS.T.hg38 C3N-02085 CCRCC WXS tumor CPT0109980007 ef04fd99-79e1-437a-9843-53dec4a298f0_wxs_gdc_realn.bam 29374420898 BAM harmonized CPTAC3 bbf0b425-1023-4713-836e-96b073e45c2b 4c8daafe9ca4ec5e3092d699452402e6 {"aliquot_tag": "ALQ_133f81f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.MethArray.Green.A C3N-02087 LUAD Methylation_Array tissue_normal CPT0118240009 203027390089_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b05f12b1-7791-49df-8cdf-3841b15eb749 5ec82c37c93e99488fedd6e4e422d97f {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.MethArray.Green.T C3N-02087 LUAD Methylation_Array tumor CPT0118200009 202234380069_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 1c0ec889-52d6-4084-b072-e386438d2add ecf113ef22da7cb38f15590d51535a61 {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.MethArray.Red.A C3N-02087 LUAD Methylation_Array tissue_normal CPT0118240009 203027390089_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 051de74e-a16b-4ebf-8139-44591e299745 bd309e4d30a1997bb2d7922a650e2923 {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.MethArray.Red.T C3N-02087 LUAD Methylation_Array tumor CPT0118200009 202234380069_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 c5a45fd9-298a-44d5-9937-ae5c23ed6e2c fee32ba21f0b0ec593286ea0232432ac {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.miRNA-Seq.A.hg38 C3N-02087 LUAD miRNA-Seq tissue_normal CPT0118240006 240d4bd1-7915-4408-8c10-6139b51e434c_mirnaseq_gdc_realn.bam 234436008 BAM harmonized CPTAC3 09525307-cf74-42f0-9688-b28dc79e2c34 d86d240cba3e3943668accad0fb9690d {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.miRNA-Seq.S36_L005_R1.A C3N-02087 LUAD miRNA-Seq tissue_normal CPT0118240006 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L005_R1_001.unaln.bam 212254168 BAM S36_L005_R1 submitted_unaligned CPTAC3 f2063e3a-107b-4b98-8e69-1bb5046cd6fd 923a23481ca83c50f199ec1cb6571671 {"aliquot_tag": "ALQ_a1d2a789", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.miRNA-Seq.S7_L004_R1.T C3N-02087 LUAD miRNA-Seq tumor CPT0118200006 181119_UNC31-K00269_0165_AH27WCBBXY_CACGAT_S7_L004_R1_001.unaln.bam 247696396 BAM S7_L004_R1 submitted_unaligned CPTAC3 c2a07a52-9f54-44ae-94d4-0298d3bc2a0f dca7f159aabd748068b21a950324bf9f {"aliquot_tag": "ALQ_54520149", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.miRNA-Seq.T.hg38 C3N-02087 LUAD miRNA-Seq tumor CPT0118200006 00ca017b-9fa8-4509-ac02-91b1c42493b4_mirnaseq_gdc_realn.bam 277392941 BAM harmonized CPTAC3 87a67073-3dda-4a9d-84cb-75073402a6c9 84d5c6bece23e2dd95f1a569ffb57cb4 {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.RNA-Seq.chimeric.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.chimeric.gdc_realn.bam 104474674 BAM chimeric harmonized CPTAC3 3f3c28d4-1667-474c-b8fb-036e34d6e904 3d29975c82db8769e376cd097149b287 {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.RNA-Seq.chimeric.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.chimeric.gdc_realn.bam 167030805 BAM chimeric harmonized CPTAC3 793b17d2-e834-408f-bc04-1449104fc7c4 347635d12777196026d881700d4781ea {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.RNA-Seq.genomic.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.genomic.gdc_realn.bam 7995106898 BAM genomic harmonized CPTAC3 fa4b9ce4-63e1-46a8-958b-39b3331dc138 ec68df439d61dae5153fe7778dd0e0cd {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.RNA-Seq.genomic.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.genomic.gdc_realn.bam 8125099617 BAM genomic harmonized CPTAC3 49a3b003-b9ed-42c4-86f8-07b9902fc036 d373bfcb2ddb5a152585da71417d0c72 {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.RNA-Seq.S19_L006_R1.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R1_001.fastq.gz 3943617864 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 fd9154ef-e737-457a-abb2-827d213c9208 93daa282849b97a3525d8b46e19d6f33 {"aliquot_tag": "ALQ_a1d2a789", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.RNA-Seq.S19_L006_R2.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R2_001.fastq.gz 4339800816 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 e919ad05-b157-48c6-9c35-de6f5836d9f4 c7b32bcae5cf42a73a8ca8dc810c60c1 {"aliquot_tag": "ALQ_a1d2a789", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.RNA-Seq.S3_L001_R1.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3532645904 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 4956578a-3158-4d54-b3be-15539b03d16c c0e9eec4304d9dc9d635474fbfa68e96 {"aliquot_tag": "ALQ_54520149", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.RNA-Seq.S3_L001_R2.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4043090524 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 ca986769-376f-45ff-8550-722c3f9e77f2 cdded844cc4615af5c85850d769b32ed {"aliquot_tag": "ALQ_54520149", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.RNA-Seq.transcriptome.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.transcriptome.gdc_realn.bam 10703636021 BAM transcriptome harmonized CPTAC3 d74a86e3-021b-4f35-a09b-4faeaef7c6d0 9d4eede43416adc24eb7ca529677c578 {"aliquot_tag": "ALQ_a1d2a789", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.RNA-Seq.transcriptome.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.transcriptome.gdc_realn.bam 10409152452 BAM transcriptome harmonized CPTAC3 9a5f852e-a886-44cc-a377-260e92e7ba52 8f4647e4ce29b2854c834c3fa9832a47 {"aliquot_tag": "ALQ_54520149", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.WGS.A C3N-02087 LUAD WGS tissue_normal CPT0118240009 CPT0118240009.WholeGenome.RP-1303.bam 48545834210 BAM submitted_aligned CPTAC3 e7a42f1b-0a98-40c9-ad95-de09ad1a22f0 363646ddd8c0cfa68f374a19b9ea0e3b {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.WGS.A.hg38 C3N-02087 LUAD WGS tissue_normal CPT0118240009 ccf3ea6d-9226-4bee-b2fc-aa707444286e_wgs_gdc_realn.bam 71690971040 BAM harmonized CPTAC3 922ee30b-5c7e-4a87-8406-d5f33750b974 d6601d1644e6ab6d3528c61e45811dc6 {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.WGS.N C3N-02087 LUAD WGS blood_normal CPT0119450002 CPT0119450002.WholeGenome.RP-1303.bam 55105117560 BAM submitted_aligned CPTAC3 26ed2f08-1019-4a82-9251-f187241fc887 caa2a0d855faf6b2a71b0868aed914dd {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02087.WGS.N.hg38 C3N-02087 LUAD WGS blood_normal CPT0119450002 0bef2750-db0c-421b-b25c-07c759f7c0d1_wgs_gdc_realn.bam 79932273483 BAM harmonized CPTAC3 4f91d76c-add3-4844-9405-eaf7825974d5 ae8111d70b5d94bdb2cd155e79415dba {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02087.WGS.T C3N-02087 LUAD WGS tumor CPT0118200009 CPT0118200009.WholeGenome.RP-1303.bam 63141422680 BAM submitted_aligned CPTAC3 83f49af0-f333-4e19-a7b0-506f155512e5 a188358b11e1ab0eea3ba29d14fe7c3d {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.WGS.T.hg38 C3N-02087 LUAD WGS tumor CPT0118200009 ac4cd440-fb64-46db-9050-79c687dc37c8_wgs_gdc_realn.bam 93851243635 BAM harmonized CPTAC3 eccc9ec3-501f-45f3-8e3c-559f4f8446a4 57e522d6163383546819d581cd267613 {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.WXS.A C3N-02087 LUAD WXS tissue_normal CPT0118240009 CPT0118240009.WholeExome.RP-1303.bam 40137320904 BAM submitted_aligned CPTAC3 35a97c7f-f33c-4232-9d7d-5fc510ef411f 593f52b2bdf634dd74fa30124103c45f {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.WXS.A.hg38 C3N-02087 LUAD WXS tissue_normal CPT0118240009 ccf3ea6d-9226-4bee-b2fc-aa707444286e_wxs_gdc_realn.bam 53429249476 BAM harmonized CPTAC3 f54a73b2-0f9f-49e4-b851-ba379b2acd60 1e6fd4673daf727856a0aca4e2067e13 {"aliquot_tag": "ALQ_316dba18", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02087.WXS.N C3N-02087 LUAD WXS blood_normal CPT0119450002 CPT0119450002.WholeExome.RP-1303.bam 26315055798 BAM submitted_aligned CPTAC3 ff0a2ef3-c88d-4ec4-b4a2-7aaa8feb2fd6 0b237eb7d680092aa6c2588b59ba9a19 {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02087.WXS.N.hg38 C3N-02087 LUAD WXS blood_normal CPT0119450002 0bef2750-db0c-421b-b25c-07c759f7c0d1_wxs_gdc_realn.bam 34244104672 BAM harmonized CPTAC3 f70ab7b9-7cdd-4d6a-bf94-2aa639167281 484536b2f8a07c45c693d9f3c99207ad {"aliquot_tag": "ALQ_ebf1a289", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02087.WXS.T C3N-02087 LUAD WXS tumor CPT0118200009 CPT0118200009.WholeExome.RP-1303.bam 26856051590 BAM submitted_aligned CPTAC3 641e6d95-25b0-4237-baaf-a5a0209e4eed a76b80619c927695f340edb3ef9e2e56 {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02087.WXS.T.hg38 C3N-02087 LUAD WXS tumor CPT0118200009 ac4cd440-fb64-46db-9050-79c687dc37c8_wxs_gdc_realn.bam 37155579105 BAM harmonized CPTAC3 ff8cb924-ad16-4dd2-862d-c2b720f48b9b 8823365b7e5ccf155df38a5c6934fb7b {"aliquot_tag": "ALQ_c4ed1cd8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.MethArray.Green.A C3N-02088 LUAD Methylation_Array tissue_normal CPT0118310009 203027390105_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d889e3b9-8d85-4318-a9a9-23d44fdf686b e6d6900c50e666933dcbe761cd8a879c {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.MethArray.Green.T C3N-02088 LUAD Methylation_Array tumor CPT0118290006 202234370095_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 6aaa30ba-3979-4431-aec0-b48d76a7d2a5 36e77323e3cc9932ce9f708e0bacb003 {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.MethArray.Red.A C3N-02088 LUAD Methylation_Array tissue_normal CPT0118310009 203027390105_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b4170625-b815-467e-843d-26c9a0f36945 9cf1d4a4bb5ef69dd981c90e3e30894d {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.MethArray.Red.T C3N-02088 LUAD Methylation_Array tumor CPT0118290006 202234370095_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 5b957dee-5172-4658-b2f5-63774ade367c be5cf3c0626c6791533649808ddf7a8b {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.miRNA-Seq.A.hg38 C3N-02088 LUAD miRNA-Seq tissue_normal CPT0118310006 59aeba00-b6de-42ef-8014-88d21a59b894_mirnaseq_gdc_realn.bam 265176171 BAM harmonized CPTAC3 7be0ed66-146e-478e-8809-ab2f7695ef22 9ea2cc8642bf65d7f0a370f6594da65a {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.miRNA-Seq.S12_L004_R1.T C3N-02088 LUAD miRNA-Seq tumor CPT0118290009 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L004_R1_001.unaln.bam 250215606 BAM S12_L004_R1 submitted_unaligned CPTAC3 ced5682b-e0f8-408c-b57d-eebb7d24f57c 1cda16adbb0ef4e07d245a99ca07b719 {"aliquot_tag": "ALQ_c9fd7ea9", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.miRNA-Seq.S37_L005_R1.A C3N-02088 LUAD miRNA-Seq tissue_normal CPT0118310006 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L005_R1_001.unaln.bam 239801085 BAM S37_L005_R1 submitted_unaligned CPTAC3 d69b6236-b4b6-430c-927d-c91bf9c3e1cf 0f103c87172ffa09f00e1c924bbeab65 {"aliquot_tag": "ALQ_a26efb5c", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.miRNA-Seq.T.hg38 C3N-02088 LUAD miRNA-Seq tumor CPT0118290009 b7af346c-47ca-4077-93a7-d93a82fa9abc_mirnaseq_gdc_realn.bam 270952139 BAM harmonized CPTAC3 dba8dff2-c51f-437e-8ec8-aa7ce18ae754 17cf962b6a3ea213ede0e98acdc6c80a {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.RNA-Seq.chimeric.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.chimeric.gdc_realn.bam 139883611 BAM chimeric harmonized CPTAC3 89165a8b-370d-455b-bb86-c2c8eb2b4d27 62fb4a9cdc57dcf60ea92de691eb06c8 {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.RNA-Seq.chimeric.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.chimeric.gdc_realn.bam 182168855 BAM chimeric harmonized CPTAC3 5b42212d-7d74-4c4a-87e7-0a3c79813fcf 765db8e934761c17bbd02173c5a88b50 {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.RNA-Seq.genomic.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.genomic.gdc_realn.bam 8145757366 BAM genomic harmonized CPTAC3 f72dd2c5-1dfb-4481-b9f2-e2948a82c611 a797bfc42d192f7e33a340f7bd46e8fa {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.RNA-Seq.genomic.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.genomic.gdc_realn.bam 9128267851 BAM genomic harmonized CPTAC3 7e17c07e-8e72-499c-b3bc-2f267a7c3b8f 515d11fb52e4f11362cc9f8758a7a01c {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.RNA-Seq.S21_L006_R1.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3988623213 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 de174032-38c7-4a4e-afd6-e62a48933eb5 207293dfafd75e0a3edcc5b4f42244b3 {"aliquot_tag": "ALQ_a26efb5c", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.RNA-Seq.S21_L006_R2.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4462595186 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 2ddac2ea-812f-4ec5-8ee1-11d1e1f68fad 5ae225b79a93d2cf6c821cc30b85becd {"aliquot_tag": "ALQ_a26efb5c", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.RNA-Seq.S6_L008_R1.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 4337153116 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 c41683b4-49ec-48f7-b121-f24f68571a6c f624a0def72af27947e3f01609705ccb {"aliquot_tag": "ALQ_c9fd7ea9", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.RNA-Seq.S6_L008_R2.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4807951183 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 904d799d-96ec-4f6d-adc1-b0e210d31122 77be07122b5ceea38210e952fd2b4e6a {"aliquot_tag": "ALQ_c9fd7ea9", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.RNA-Seq.transcriptome.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.transcriptome.gdc_realn.bam 9900302561 BAM transcriptome harmonized CPTAC3 8f03eeba-e3b3-4177-a096-ddc83df83fac d98cf1053732cca42ad033009725f80e {"aliquot_tag": "ALQ_a26efb5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.RNA-Seq.transcriptome.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.transcriptome.gdc_realn.bam 12548700075 BAM transcriptome harmonized CPTAC3 d64e8230-5f33-44b8-93b6-6175d80eed03 e8d2d4edeb2596a0c3cdfc2d08ff6998 {"aliquot_tag": "ALQ_c9fd7ea9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.WGS.A C3N-02088 LUAD WGS tissue_normal CPT0118310009 CPT0118310009.WholeGenome.RP-1303.bam 52416460437 BAM submitted_aligned CPTAC3 93afd6ad-639c-4473-adaf-fc9c13d5a424 89dffbe593768ce90ae2afbba667bb4a {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.WGS.A.hg38 C3N-02088 LUAD WGS tissue_normal CPT0118310009 56eed8b7-85b5-40b4-906d-a6bad5a33ce9_wgs_gdc_realn.bam 77101901142 BAM harmonized CPTAC3 2d1961c3-0e09-4f0e-a179-d3d77108ae09 2f53b666977c61c13da4d651af19deb8 {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.WGS.N C3N-02088 LUAD WGS blood_normal CPT0119510002 CPT0119510002.WholeGenome.RP-1303.bam 61670658984 BAM submitted_aligned CPTAC3 16819bf7-cde9-4155-8db9-917931cbe6aa 4429b2e99f8c41563e6f522dbd3cca52 {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02088.WGS.N.hg38 C3N-02088 LUAD WGS blood_normal CPT0119510002 b6ace695-9412-4adc-956d-2ef198d638fe_wgs_gdc_realn.bam 93528163478 BAM harmonized CPTAC3 37bfe145-53c7-4a30-81a1-230c864debac 090569caa37e566e651cfde79a1d6bc4 {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02088.WGS.T C3N-02088 LUAD WGS tumor CPT0118290006 CPT0118290006.WholeGenome.RP-1303.bam 73434232319 BAM submitted_aligned CPTAC3 93751ba4-8e43-4c9f-a031-488894fffd4d be354706e65e94a7f205095e6a9c0fd2 {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.WGS.T.hg38 C3N-02088 LUAD WGS tumor CPT0118290006 2c104e43-5d4a-4308-abe5-804e815b6d78_wgs_gdc_realn.bam 108936176788 BAM harmonized CPTAC3 19bf24e7-224f-41de-8a2e-b746771f9993 62ae239d6cac1b10a0565d9e900451a1 {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.WXS.A C3N-02088 LUAD WXS tissue_normal CPT0118310009 CPT0118310009.WholeExome.RP-1303.bam 53703754133 BAM submitted_aligned CPTAC3 562a6bf6-1e0d-4649-90cd-166a1657af62 5554d3a0bfe4bc58069e6b6d4d140d0b {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.WXS.A.hg38 C3N-02088 LUAD WXS tissue_normal CPT0118310009 56eed8b7-85b5-40b4-906d-a6bad5a33ce9_wxs_gdc_realn.bam 71728409886 BAM harmonized CPTAC3 4e031bfc-0122-4f9d-81cd-27869583960d 6e46c2e928b73538b5073b954335b96a {"aliquot_tag": "ALQ_32d1e6cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02088.WXS.N C3N-02088 LUAD WXS blood_normal CPT0119510002 CPT0119510002.WholeExome.RP-1303.bam 27028466714 BAM submitted_aligned CPTAC3 a3594a59-dc83-4c1d-8a6b-35a1e3b452b7 982e4a52223a4c4043258a32534d439d {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02088.WXS.N.hg38 C3N-02088 LUAD WXS blood_normal CPT0119510002 b6ace695-9412-4adc-956d-2ef198d638fe_wxs_gdc_realn.bam 36154225292 BAM harmonized CPTAC3 aa4e5b5f-1b25-45f9-ae87-cfd762d9d03a 4050ca167373529105ab64521e6534de {"aliquot_tag": "ALQ_d52dd7ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02088.WXS.T C3N-02088 LUAD WXS tumor CPT0118290006 CPT0118290006.WholeExome.RP-1303.bam 28296573218 BAM submitted_aligned CPTAC3 1af0db49-33b3-47d5-aa94-2d5000e64e88 6fcbde9b729147fdbad5122fe16cbc9e {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02088.WXS.T.hg38 C3N-02088 LUAD WXS tumor CPT0118290006 2c104e43-5d4a-4308-abe5-804e815b6d78_wxs_gdc_realn.bam 38383949514 BAM harmonized CPTAC3 d766e7d6-51a3-4b5c-8cd1-956e4119d2a7 e5415db839b88b576f92bae0db75c5cb {"aliquot_tag": "ALQ_59426338", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.MethArray.Green.A C3N-02089 LUAD Methylation_Array tissue_normal CPT0118360009 203028200104_R06C01_Grn.idat 13676238 IDAT Green NA CPTAC3 5aeaa1e9-66a5-4a84-9bb0-0b68e7701c0e 5dc65d62eef480d92958666d678f3b0a {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.MethArray.Green.T C3N-02089 LUAD Methylation_Array tumor CPT0118340006 202234370079_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b49185b-ef11-4b9f-8c9c-907900042ef9 d843b584adeae784a4839998125213e6 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.MethArray.Red.A C3N-02089 LUAD Methylation_Array tissue_normal CPT0118360009 203028200104_R06C01_Red.idat 13676238 IDAT Red NA CPTAC3 0acd56a4-e06a-4fe9-9242-705c486c781e cbd2c00ac231a552dcafa5410bf74c9f {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.MethArray.Red.T C3N-02089 LUAD Methylation_Array tumor CPT0118340006 202234370079_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 7b78d1a5-1b5a-4d83-ac38-90e9877911bb 580faed222c12c0fab70eab2d56809d3 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.miRNA-Seq.A.hg38 C3N-02089 LUAD miRNA-Seq tissue_normal CPT0118360006 a02d863e-f3de-4de4-bab1-c9cbc4550e21_mirnaseq_gdc_realn.bam 310009244 BAM harmonized CPTAC3 74e53ea3-b5ac-4a01-bb3b-56bbc11a39ee 47cfd21d71552df57c957a13d7e179b7 {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.miRNA-Seq.S13_L004_R1.T C3N-02089 LUAD miRNA-Seq tumor CPT0118340009 181119_UNC31-K00269_0165_AH27WCBBXY_CGGAAT_S13_L004_R1_001.unaln.bam 242455672 BAM S13_L004_R1 submitted_unaligned CPTAC3 d3244482-335f-43ad-ae70-6617e669a35c e5b637713125b801e479b8cc9203dbfc {"aliquot_tag": "ALQ_fa3169bd", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.miRNA-Seq.S38_L005_R1.A C3N-02089 LUAD miRNA-Seq tissue_normal CPT0118360006 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L005_R1_001.unaln.bam 279509337 BAM S38_L005_R1 submitted_unaligned CPTAC3 39287023-864c-4fe2-a590-21bddf937f8a 29ec331cbbbc27aa0cbad8de4268a6ad {"aliquot_tag": "ALQ_104e274c", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.miRNA-Seq.T.hg38 C3N-02089 LUAD miRNA-Seq tumor CPT0118340009 b0f2aa34-0ca6-44e3-8eb4-5334b8680da1_mirnaseq_gdc_realn.bam 271549208 BAM harmonized CPTAC3 562ff34a-e416-4af3-9aab-b3ffd46a5e7d 2c14f8bfdc16dc4171386a4713fa33cc {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.RNA-Seq.chimeric.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.chimeric.gdc_realn.bam 132506003 BAM chimeric harmonized CPTAC3 89ef336a-29ef-496d-b4fe-bec90e78dc51 4704dc02a93c8e8e00235d6a98b065f2 {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.RNA-Seq.chimeric.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.chimeric.gdc_realn.bam 160271349 BAM chimeric harmonized CPTAC3 0cc763d9-a767-4cde-ab57-3261996338f6 a841b9b114eb84cebe2a910a381ece4c {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.RNA-Seq.genomic.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.genomic.gdc_realn.bam 8915906068 BAM genomic harmonized CPTAC3 0a1b15b1-f7f6-44a5-b45c-0689f810cd1e 68c9106410f98bde404c7a41e9fb65f3 {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.RNA-Seq.genomic.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.genomic.gdc_realn.bam 8920853591 BAM genomic harmonized CPTAC3 1f556f48-a65a-4ecf-837f-1d43874e4cbc eb25efd20da116ab162c2336416eddab {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.RNA-Seq.S17_L005_R1.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R1_001.fastq.gz 4006816794 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 6cae1ea6-88e5-40dd-915d-432fc9c93481 10c6bc5b72b4658b72e17771d97428a8 {"aliquot_tag": "ALQ_104e274c", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.RNA-Seq.S17_L005_R2.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R2_001.fastq.gz 4369116046 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 3e472cb4-dad7-47d3-a999-ba6a1ba48c6a 3fe1473bd77f927b6513ed72299e24ff {"aliquot_tag": "ALQ_104e274c", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.RNA-Seq.S8_L008_R1.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 3957112705 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 f55ad41e-1de0-4cea-a25b-0cd1080a0fa3 58445f1119c42337b3b8c209621cb854 {"aliquot_tag": "ALQ_fa3169bd", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.RNA-Seq.S8_L008_R2.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4364269997 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 7b5f3cbe-3f29-4590-8489-0df8a8a69033 f9a52f0c673ee07252a14afeeab96fd3 {"aliquot_tag": "ALQ_fa3169bd", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.RNA-Seq.transcriptome.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.transcriptome.gdc_realn.bam 9704461517 BAM transcriptome harmonized CPTAC3 1b81021c-6749-4fe4-ba89-58df8f39950f b8ad36c0326de611fe20bf24bc59059d {"aliquot_tag": "ALQ_104e274c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.RNA-Seq.transcriptome.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.transcriptome.gdc_realn.bam 10384239278 BAM transcriptome harmonized CPTAC3 51e3bf9b-281f-4e91-a5ea-9e46ca756881 394d472dfe9132d7a91b095c73112844 {"aliquot_tag": "ALQ_fa3169bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.WGS.A C3N-02089 LUAD WGS tissue_normal CPT0118360009 CPT0118360009.WholeGenome.RP-1303.bam 57379626853 BAM submitted_aligned CPTAC3 cc944745-f147-44aa-8aef-b7b961026a2a bea6c5b777b337cd3c4c3025e8148312 {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.WGS.A.hg38 C3N-02089 LUAD WGS tissue_normal CPT0118360009 979e5009-77c3-42ac-bda6-187ef5352551_wgs_gdc_realn.bam 84071062347 BAM harmonized CPTAC3 0554d971-6cdf-44f4-9e28-6310f8215645 3b400b30c11daf2baf2229459a6f5539 {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.WGS.N C3N-02089 LUAD WGS blood_normal CPT0119570002 CPT0119570002.WholeGenome.RP-1303.bam 56483181536 BAM submitted_aligned CPTAC3 dce4a3ed-7499-43cc-9cde-651bd1d3eb8e 4095e68fce2ea1382ddc8b242cbd81ef {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02089.WGS.N.hg38 C3N-02089 LUAD WGS blood_normal CPT0119570002 b9059e86-abad-4281-9c78-366b62c92cc1_wgs_gdc_realn.bam 83290204477 BAM harmonized CPTAC3 cf05d1d8-8660-49bc-82b2-e742eb55e15f f1ceba6ef3509ec889ce56b70cf0ae64 {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02089.WGS.T C3N-02089 LUAD WGS tumor CPT0118340006 CPT0118340006.WholeGenome.RP-1303.bam 67580722022 BAM submitted_aligned CPTAC3 0bf2a8bf-1a36-4983-bd6b-2e61b6a2c29a 454193f448bda9ab9f59fa0ae079703c {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.WGS.T.hg38 C3N-02089 LUAD WGS tumor CPT0118340006 84900de9-1209-4719-bcc0-f155224277c3_wgs_gdc_realn.bam 98152159489 BAM harmonized CPTAC3 a074a7e3-63bd-4df5-93e8-29a97cd6dd87 a0e136e193747fda3361cb28ff69b9c5 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.WXS.A C3N-02089 LUAD WXS tissue_normal CPT0118360009 CPT0118360009.WholeExome.RP-1303.bam 28406098301 BAM submitted_aligned CPTAC3 d9ff3746-b981-4e33-8b4a-d6e7cdc1d213 1f0c44c1e3ef9bf89ba544dd33f622cf {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.WXS.A.hg38 C3N-02089 LUAD WXS tissue_normal CPT0118360009 979e5009-77c3-42ac-bda6-187ef5352551_wxs_gdc_realn.bam 37945356644 BAM harmonized CPTAC3 d2cd63c4-3df2-46ad-aef0-b9031ad2d0bd da8640909f879cfd9fd82bec6bfdc752 {"aliquot_tag": "ALQ_80f13add", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02089.WXS.N C3N-02089 LUAD WXS blood_normal CPT0119570002 CPT0119570002.WholeExome.RP-1303.bam 30342061198 BAM submitted_aligned CPTAC3 570cb86c-7f9d-495e-9b63-78728341b5b5 24492b53aa6201974ea675b5c3a2fada {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02089.WXS.N.hg38 C3N-02089 LUAD WXS blood_normal CPT0119570002 b9059e86-abad-4281-9c78-366b62c92cc1_wxs_gdc_realn.bam 39843032408 BAM harmonized CPTAC3 9efddfc1-9d19-4892-a8ee-21bd626507cf fc22f8c75dda747072b97c1c5488c2c0 {"aliquot_tag": "ALQ_5a6d224c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02089.WXS.T C3N-02089 LUAD WXS tumor CPT0118340006 CPT0118340006.WholeExome.RP-1303.bam 29782252180 BAM submitted_aligned CPTAC3 2e60df94-1801-406c-b622-9fe9793386b0 ed252d23f5a6339d1cd9520cb207eed7 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02089.WXS.T.hg38 C3N-02089 LUAD WXS tumor CPT0118340006 84900de9-1209-4719-bcc0-f155224277c3_wxs_gdc_realn.bam 40438793522 BAM harmonized CPTAC3 12a437cd-b438-4fdc-b7f5-33b0b3fd8756 567442470b5f09afa12cb06874d270a4 {"aliquot_tag": "ALQ_6a8e742c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.MethArray.Green.A C3N-02090 LUAD Methylation_Array tissue_normal CPT0118410009 203027390091_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d6749c9d-9198-4cd6-945c-956bf541bc20 b153b1094e7af9c4744266df253548f0 {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.MethArray.Green.T C3N-02090 LUAD Methylation_Array tumor CPT0118400006 202234380099_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 17ee1af4-01ee-4173-8a12-e72266513d3c 8866efbf7496cbd934b1c5fe10b223b9 {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.MethArray.Red.A C3N-02090 LUAD Methylation_Array tissue_normal CPT0118410009 203027390091_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 943ae5ab-3dba-4b73-ba72-27f17a04c3fe f643637919eba1443df6cf456c0f1b13 {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.MethArray.Red.T C3N-02090 LUAD Methylation_Array tumor CPT0118400006 202234380099_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 9ed3d991-2f24-4284-97f6-ab4f3d0412a0 de4adfa638b44de23ce69d70a8394757 {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.miRNA-Seq.A.hg38 C3N-02090 LUAD miRNA-Seq tissue_normal CPT0118410006 433bc38e-cb28-44e5-9f11-795e07f70448_mirnaseq_gdc_realn.bam 295073507 BAM harmonized CPTAC3 b54a2d0b-9518-445d-9fb5-233a85dcce36 b8714de7d9d8913bde7a45336bcb7d20 {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.miRNA-Seq.S14_L004_R1.T C3N-02090 LUAD miRNA-Seq tumor CPT0118400009 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L004_R1_001.unaln.bam 236069079 BAM S14_L004_R1 submitted_unaligned CPTAC3 8998f8ef-e988-45c6-8bae-76134c838031 09e729e8e7726027110c38061864e9d8 {"aliquot_tag": "ALQ_12b4ffc5", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.miRNA-Seq.S39_L005_R1.A C3N-02090 LUAD miRNA-Seq tissue_normal CPT0118410006 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L005_R1_001.unaln.bam 267050574 BAM S39_L005_R1 submitted_unaligned CPTAC3 632c7cd7-a6c2-49ca-9488-beedbad1fe88 c7dc93f8d5cd2e6c5959e2393541036b {"aliquot_tag": "ALQ_bf6bcbe4", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.miRNA-Seq.T.hg38 C3N-02090 LUAD miRNA-Seq tumor CPT0118400009 6af56855-7f72-43f9-8bc1-485b0bcc2243_mirnaseq_gdc_realn.bam 253801738 BAM harmonized CPTAC3 70fb4abf-7167-482f-b6cb-f2ec27e70c62 b97a4a3f6bd9fdcfac8ff3b72f82adfe {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.RNA-Seq.chimeric.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.chimeric.gdc_realn.bam 137402159 BAM chimeric harmonized CPTAC3 63641794-618a-4d93-abaa-e86243545b25 bf2201592b192e91d0a721667cc275cf {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.RNA-Seq.chimeric.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.chimeric.gdc_realn.bam 108705140 BAM chimeric harmonized CPTAC3 7ade0c41-44f0-4cc0-b532-0b3e4bff63f6 9ddd31a722531125b2b682514fea34c8 {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.RNA-Seq.genomic.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.genomic.gdc_realn.bam 8785096664 BAM genomic harmonized CPTAC3 7f44964f-3f12-4666-bfc9-56d7aac25c9c 2d83b33999d2e300e89c7746a8165787 {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.RNA-Seq.genomic.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.genomic.gdc_realn.bam 9617815310 BAM genomic harmonized CPTAC3 8788b316-8d5a-43d1-8728-7165feddeabf a011a49a6b90b0a0adbd0d9dd298ccd9 {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.RNA-Seq.S16_L005_R1.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4049679833 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 63bd9e37-4274-4c07-b880-dcf308ddab13 706215e612ede0dd65aa745d6a978b40 {"aliquot_tag": "ALQ_bf6bcbe4", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.RNA-Seq.S16_L005_R2.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4417367803 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 baf794a7-7617-41df-ae12-1dff298766a0 a1dffa2dc1b179bd9028e491bad839ca {"aliquot_tag": "ALQ_bf6bcbe4", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.RNA-Seq.S7_L008_R1.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 4028091448 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 a7493980-2b11-4a43-8e50-6e6840aa2022 c62ebd9d63bbcd7a35b9a0971e31484c {"aliquot_tag": "ALQ_12b4ffc5", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.RNA-Seq.S7_L008_R2.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 4295268985 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 5b473429-77ce-4a37-aa9d-cc2635da3ec8 e9ee0b1e2d0d7398a972777dfd07867a {"aliquot_tag": "ALQ_12b4ffc5", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.RNA-Seq.transcriptome.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.transcriptome.gdc_realn.bam 9758980234 BAM transcriptome harmonized CPTAC3 ff7e0747-c386-4518-846d-ca8f9716c5f2 a8c40e87ea57d4415f81bb4f5cc63dcb {"aliquot_tag": "ALQ_bf6bcbe4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.RNA-Seq.transcriptome.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.transcriptome.gdc_realn.bam 9983681128 BAM transcriptome harmonized CPTAC3 32aee39e-872a-4b92-9954-0273493a2a63 4bac89bad217c44d0fbf90ba159849db {"aliquot_tag": "ALQ_12b4ffc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.WGS.A C3N-02090 LUAD WGS tissue_normal CPT0118410009 CPT0118410009.WholeGenome.RP-1303.bam 57671007203 BAM submitted_aligned CPTAC3 6b629d6b-8b03-4a46-a1cc-a6fa4fd2c5a3 a53b3f3483c8e3388c4afaf2aa3d469f {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.WGS.A.hg38 C3N-02090 LUAD WGS tissue_normal CPT0118410009 483f19ba-872e-4dd1-87bb-376941d19e2c_wgs_gdc_realn.bam 83956334240 BAM harmonized CPTAC3 20e7625f-1dd3-4def-9fa1-95c47bea4835 f483c491456d6728ca9e8cde8b89a04d {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.WGS.N C3N-02090 LUAD WGS blood_normal CPT0119630002 CPT0119630002.WholeGenome.RP-1303.bam 58873017214 BAM submitted_aligned CPTAC3 3344c484-7c13-4ada-9edf-efbbc5886261 1dc9b6044d66b615d901cbc64b3c13c1 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02090.WGS.N.hg38 C3N-02090 LUAD WGS blood_normal CPT0119630002 c99d5a2a-2601-496f-af7b-2c136670f816_wgs_gdc_realn.bam 87047300448 BAM harmonized CPTAC3 dda1015c-62e1-4f9e-940e-6825b0e1308d 1b05dca56636e6a706402e49749a2108 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02090.WGS.T C3N-02090 LUAD WGS tumor CPT0118400006 CPT0118400006.WholeGenome.RP-1303.bam 58175350294 BAM submitted_aligned CPTAC3 e200c52e-e213-4c28-a52b-6bae7d3cacab 9d6630a136db6eaadae01a2e4e3f2254 {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.WGS.T.hg38 C3N-02090 LUAD WGS tumor CPT0118400006 133f4e23-30d9-438f-87fe-f068bb78ccba_wgs_gdc_realn.bam 85201772128 BAM harmonized CPTAC3 02783d14-f14d-4e26-b18d-22075e60bdbc bd99721fbbefd174b8baeb28825d822c {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.WXS.A C3N-02090 LUAD WXS tissue_normal CPT0118410009 CPT0118410009.WholeExome.RP-1303.bam 37613893147 BAM submitted_aligned CPTAC3 ad985ea9-d442-45fb-8a54-c9e869a639ad 6359f89c5759efd80563f2a82d86f954 {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.WXS.A.hg38 C3N-02090 LUAD WXS tissue_normal CPT0118410009 483f19ba-872e-4dd1-87bb-376941d19e2c_wxs_gdc_realn.bam 50942071008 BAM harmonized CPTAC3 343f2ecd-d719-4afa-b02c-3c92c51001c1 223a41ccea2ac27e98a0e076c2b1d2fe {"aliquot_tag": "ALQ_2fd4d675", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02090.WXS.N C3N-02090 LUAD WXS blood_normal CPT0119630002 CPT0119630002.WholeExome.RP-1303.bam 32594841952 BAM submitted_aligned CPTAC3 1d38b145-dd20-4b90-b5c6-bdcb291e0fcd a25668359086a0fe03c8139a26e29106 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02090.WXS.N.hg38 C3N-02090 LUAD WXS blood_normal CPT0119630002 c99d5a2a-2601-496f-af7b-2c136670f816_wxs_gdc_realn.bam 42597429185 BAM harmonized CPTAC3 b8dfaeb8-99ff-4f39-b57b-c25975f6de5e 52e4c89114496624b524ca53ad295873 {"aliquot_tag": "ALQ_2979f622", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02090.WXS.T C3N-02090 LUAD WXS tumor CPT0118400006 CPT0118400006.WholeExome.RP-1303.bam 28096701045 BAM submitted_aligned CPTAC3 c2998580-eda2-4ded-a23c-27c19e748542 ece23c5855e4d72c9d0918190366888e {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02090.WXS.T.hg38 C3N-02090 LUAD WXS tumor CPT0118400006 133f4e23-30d9-438f-87fe-f068bb78ccba_wxs_gdc_realn.bam 37560027297 BAM harmonized CPTAC3 da387610-31b1-4180-bdb0-c9d01c057009 55256ccc824ad4fbf952aefc437922fa {"aliquot_tag": "ALQ_820be254", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.MethArray.Green.A C3N-02141 LUAD Methylation_Array tissue_normal CPT0118470009 203027390049_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3867a101-512a-4d80-8449-aad26f14664b a11ac83f3414fce0532c6bacff19e532 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.MethArray.Green.T C3N-02141 LUAD Methylation_Array tumor CPT0118460006 202234360025_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ee6aa2d6-5ea2-4e34-b3ee-708537161d8b ae2f5aea082ace26f44d6de83124c203 {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.MethArray.Red.A C3N-02141 LUAD Methylation_Array tissue_normal CPT0118470009 203027390049_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 724952d5-e73a-4f2b-b0f9-5ca33453f346 615f13ccb4db2a5aa7016b489f94f628 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.MethArray.Red.T C3N-02141 LUAD Methylation_Array tumor CPT0118460006 202234360025_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 0061a9c2-ab7e-4809-b094-17d6302dc0b7 098ecef44288ec3f6ef678ea60cef37f {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.miRNA-Seq.A.hg38 C3N-02141 LUAD miRNA-Seq tissue_normal CPT0118470006 35c8a103-8e84-40fe-8b68-36f3f084a5a5_mirnaseq_gdc_realn.bam 305204431 BAM harmonized CPTAC3 6d7fc0b4-fde5-4ca7-a6a6-d797c65284a7 0a37d9824bfb66a21fc5b0623adaaf59 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.miRNA-Seq.S15_L004_R1.T C3N-02141 LUAD miRNA-Seq tumor CPT0118460009 181119_UNC31-K00269_0165_AH27WCBBXY_CTATAC_S15_L004_R1_001.unaln.bam 294023834 BAM S15_L004_R1 submitted_unaligned CPTAC3 b9bf501c-e2c7-47ab-a757-2d527a15c052 d1ebe00a0566f9ea4f6e491ccdc32151 {"aliquot_tag": "ALQ_9df40a65", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.miRNA-Seq.S40_L005_R1.A C3N-02141 LUAD miRNA-Seq tissue_normal CPT0118470006 181108_UNC31-K00269_0162_AH255GBBXY_CCGTCC_S40_L005_R1_001.unaln.bam 274483538 BAM S40_L005_R1 submitted_unaligned CPTAC3 b67d9b37-c3b7-4119-813d-28b87ce953a0 6b2b99da7f7aaaa68344c5c593d532d2 {"aliquot_tag": "ALQ_302b3e44", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.miRNA-Seq.T.hg38 C3N-02141 LUAD miRNA-Seq tumor CPT0118460009 7116f11b-655d-458d-8965-f15867616114_mirnaseq_gdc_realn.bam 317941617 BAM harmonized CPTAC3 9cd7227d-a8b5-4b22-9177-94ec4bac17f1 ca06a2b2e85fdee19aea741e10809940 {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.RNA-Seq.chimeric.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.chimeric.gdc_realn.bam 117920768 BAM chimeric harmonized CPTAC3 aa4ccfa5-73bc-4bc0-8479-51f2798a658d 1964447a33d596a344b99282fd0270f2 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.RNA-Seq.chimeric.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.chimeric.gdc_realn.bam 89089722 BAM chimeric harmonized CPTAC3 c8f8b64f-a254-482c-b9fa-df04655c6589 bcd7d8282814f58c1f08c62b4502637e {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.RNA-Seq.genomic.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.genomic.gdc_realn.bam 8270521489 BAM genomic harmonized CPTAC3 06cc2061-57ab-43ef-9448-47c61fdaf0ec abe3e60e78f63d70fc0dd6a2d0cba327 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.RNA-Seq.genomic.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.genomic.gdc_realn.bam 9053110390 BAM genomic harmonized CPTAC3 f12f5ef4-3ff1-4d2d-b911-d485ac3ac8dc 3b249902e8ae8995f99d2ef9a247036b {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.RNA-Seq.S15_L005_R1.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3939827787 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 52a5af0c-f2a3-4d46-965d-ce9c92537db6 04210e3de76c43908d3e931e540537bb {"aliquot_tag": "ALQ_302b3e44", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.RNA-Seq.S15_L005_R2.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4028003270 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 66c0ad73-f4a1-4e83-be0c-83b6741f7537 c44a7188f0e8aca2d806ba69684ef4ae {"aliquot_tag": "ALQ_302b3e44", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.RNA-Seq.S3_L007_R1.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3931214925 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 13374d3a-5f40-4428-8f3e-9cf5821f41b4 cb20c3a55571c1b43e84d9e85906b41a {"aliquot_tag": "ALQ_9df40a65", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.RNA-Seq.S3_L007_R2.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4371695744 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 8e5d70f1-d52e-4288-a4f6-bf1115a72aa5 50b39be78b8c71ea1ff0e00f282ca698 {"aliquot_tag": "ALQ_9df40a65", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.RNA-Seq.transcriptome.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.transcriptome.gdc_realn.bam 9157906695 BAM transcriptome harmonized CPTAC3 fa7bbb25-d9d4-4b81-8918-2b5812d1fd6e 57227199a5c6b62bdefc6c6c56088884 {"aliquot_tag": "ALQ_302b3e44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.RNA-Seq.transcriptome.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.transcriptome.gdc_realn.bam 11192306625 BAM transcriptome harmonized CPTAC3 7143fd08-8016-478c-a85f-16ff53fcda62 b367ea8daa8b0ace687284676d87e2a2 {"aliquot_tag": "ALQ_9df40a65", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.WGS.A C3N-02141 LUAD WGS tissue_normal CPT0118470009 CPT0118470009.WholeGenome.RP-1303.bam 54043357457 BAM submitted_aligned CPTAC3 25c78b39-62c9-4180-ae07-e8b01f7cf6eb 928c08e6396160340caf214fcc83bed0 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.WGS.A.hg38 C3N-02141 LUAD WGS tissue_normal CPT0118470009 77df72d0-2c0f-451a-886b-729a5a49fe9e_wgs_gdc_realn.bam 80580473240 BAM harmonized CPTAC3 92c541b8-fda9-4943-96e1-5ff133718d21 bdda41776191b8542360ff66eafa0a2d {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.WGS.N C3N-02141 LUAD WGS blood_normal CPT0119690002 CPT0119690002.WholeGenome.RP-1303.bam 59351101934 BAM submitted_aligned CPTAC3 9ae4097b-b7d6-495d-9bef-10baa2f7c660 b06daa7fa4578ec6c26342a6db7ff97d {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02141.WGS.N.hg38 C3N-02141 LUAD WGS blood_normal CPT0119690002 538535a7-8176-444e-92e6-a291311664c9_wgs_gdc_realn.bam 89271278971 BAM harmonized CPTAC3 82531eff-31c2-4309-82f7-d7374032c78b 679a6734ce48dc4788f866e884f478ce {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02141.WGS.T C3N-02141 LUAD WGS tumor CPT0118460006 CPT0118460006.WholeGenome.RP-1303.bam 81670797023 BAM submitted_aligned CPTAC3 512e59ea-b15d-4485-a55e-a3a14b7d573e d256d9394d014145e642ca887c922a31 {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.WGS.T.hg38 C3N-02141 LUAD WGS tumor CPT0118460006 54187d65-be19-4659-87e7-eec96724264f_wgs_gdc_realn.bam 121463101189 BAM harmonized CPTAC3 4aeeccdc-dac1-41f9-b341-6b97a9cc8017 75c7db4c51b82cb6ed7a0b18a40b1af4 {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.WXS.A C3N-02141 LUAD WXS tissue_normal CPT0118470009 CPT0118470009.WholeExome.RP-1303.bam 27397101911 BAM submitted_aligned CPTAC3 e9e54c08-9341-48b8-b85f-90ea32fbab64 4b502017468795ca9b4b67bc2076bcd4 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.WXS.A.hg38 C3N-02141 LUAD WXS tissue_normal CPT0118470009 77df72d0-2c0f-451a-886b-729a5a49fe9e_wxs_gdc_realn.bam 36903157710 BAM harmonized CPTAC3 adbf7e9d-f8e7-4466-a1f0-c42606846ebb 78d9b8d6f1468354ab4510243d5af343 {"aliquot_tag": "ALQ_a09423d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02141.WXS.N C3N-02141 LUAD WXS blood_normal CPT0119690002 CPT0119690002.WholeExome.RP-1303.bam 31639433561 BAM submitted_aligned CPTAC3 5f91b06c-115e-4168-a219-c773b2285054 2bf33b22321ffae89cc30d2b823eda35 {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02141.WXS.N.hg38 C3N-02141 LUAD WXS blood_normal CPT0119690002 538535a7-8176-444e-92e6-a291311664c9_wxs_gdc_realn.bam 42765060728 BAM harmonized CPTAC3 892b1de2-f64a-4692-a536-156b4cb915e2 d39c1cda9e57cac8be36a0870546978a {"aliquot_tag": "ALQ_63c9ee83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02141.WXS.T C3N-02141 LUAD WXS tumor CPT0118460006 CPT0118460006.WholeExome.RP-1303.bam 34418701602 BAM submitted_aligned CPTAC3 a600477a-7714-40f5-b50c-2180b708011e 0932d392fdd7395d1dc377455b6f464a {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02141.WXS.T.hg38 C3N-02141 LUAD WXS tumor CPT0118460006 54187d65-be19-4659-87e7-eec96724264f_wxs_gdc_realn.bam 46196521153 BAM harmonized CPTAC3 5fd2240e-b014-4e6e-bbf3-f19538e785d4 e1b7a8de038d418044deb8689979089c {"aliquot_tag": "ALQ_d4b17f4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.MethArray.Green.A C3N-02142 LUAD Methylation_Array tissue_normal CPT0118530009 203027390073_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e5651973-c606-444c-95a9-683a0a9d83fb 57b262fc0d5906d597bc03b7bcf72cea {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.MethArray.Green.T C3N-02142 LUAD Methylation_Array tumor CPT0118510006 202234380058_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 6b590aa2-96ee-43ed-a780-c12c60cccfaf 88f340f21e08e984a75211969154df57 {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.MethArray.Red.A C3N-02142 LUAD Methylation_Array tissue_normal CPT0118530009 203027390073_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 4a978c2f-9482-4901-9b80-b4b48acd6a1f 1393b0d0fe321087b4437e07cdfce0ab {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.MethArray.Red.T C3N-02142 LUAD Methylation_Array tumor CPT0118510006 202234380058_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 4b895eac-288d-4ca8-bf22-5958166f14e3 522f1f4ea10bf4cc4eefb5d44656162f {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.miRNA-Seq.A.hg38 C3N-02142 LUAD miRNA-Seq tissue_normal CPT0118530006 66c55785-e9d2-4bfe-a365-27e8b47b0d9f_mirnaseq_gdc_realn.bam 316836400 BAM harmonized CPTAC3 5eb56e60-f187-44e5-878e-da17cc7885e5 669c757c997be67b81389aac8553f3a9 {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.miRNA-Seq.S16_L004_R1.T C3N-02142 LUAD miRNA-Seq tumor CPT0118510009 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L004_R1_001.unaln.bam 218332072 BAM S16_L004_R1 submitted_unaligned CPTAC3 1ad648eb-1fa8-4ea8-89bb-014ab63661d5 5daa0238600b26b93ff88ac92288e12f {"aliquot_tag": "ALQ_e48805d0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.miRNA-Seq.S41_L005_R1.A C3N-02142 LUAD miRNA-Seq tissue_normal CPT0118530006 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L005_R1_001.unaln.bam 289213751 BAM S41_L005_R1 submitted_unaligned CPTAC3 3fad34b8-dcbf-4d0f-958c-889a45e8ea3b c3b5b1973e5008e16fc924926d369321 {"aliquot_tag": "ALQ_ef74b21", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.miRNA-Seq.T.hg38 C3N-02142 LUAD miRNA-Seq tumor CPT0118510009 088309f7-e140-458e-81a3-7312bee48795_mirnaseq_gdc_realn.bam 240951139 BAM harmonized CPTAC3 848649c8-91cb-4df9-a4a7-041ed972fb8f 97b749a4bdbe4f543347c50ceaeb0124 {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.RNA-Seq.chimeric.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.chimeric.gdc_realn.bam 120017125 BAM chimeric harmonized CPTAC3 4ec22e10-9550-438e-abb6-71eca8d1a27f 4e7548934714760da5d25a737a24261b {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.RNA-Seq.chimeric.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.chimeric.gdc_realn.bam 127797808 BAM chimeric harmonized CPTAC3 681f42b3-a880-422d-a7fb-c69c1516f827 97fd20c9f7a46d5ea17be94212dc295f {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.RNA-Seq.genomic.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.genomic.gdc_realn.bam 10093006027 BAM genomic harmonized CPTAC3 2fde099c-d773-4b45-ae32-91087e201de8 5d62d299e09c307a86a8c7b1e684e55a {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.RNA-Seq.genomic.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.genomic.gdc_realn.bam 8830687443 BAM genomic harmonized CPTAC3 bf881673-a81c-46cb-abd6-11bbbb4b8dae 089c10ee575e84e1e91589f11cafe176 {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.RNA-Seq.S18_L005_R1.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R1_001.fastq.gz 4505798595 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 bb829216-c187-4336-84b8-f0f1c64220af aa4a1574d4433bb0c97879fd681ad1c7 {"aliquot_tag": "ALQ_ef74b21", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.RNA-Seq.S18_L005_R2.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R2_001.fastq.gz 5018384513 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 4be3adf5-e32b-483c-bf8c-653ea7e322e9 a6d21d1dcc803dec69199145b5370e49 {"aliquot_tag": "ALQ_ef74b21", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.RNA-Seq.S2_L007_R1.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3849498448 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 571952bb-c06c-466a-ad6b-5857fc76dde1 28166f3facaeb959f6f12f2e4456e0fe {"aliquot_tag": "ALQ_e48805d0", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.RNA-Seq.S2_L007_R2.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 4030858606 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 a90f7366-6262-410f-96c7-44efcdef156a 52f623b744d4af23f6cb49ac1fbb4c32 {"aliquot_tag": "ALQ_e48805d0", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.RNA-Seq.transcriptome.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.transcriptome.gdc_realn.bam 12210847532 BAM transcriptome harmonized CPTAC3 a9d3c022-1de6-4b6f-b171-6d0bfae30f3e 2c7820be2f830583bf0162d513363b68 {"aliquot_tag": "ALQ_ef74b21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.RNA-Seq.transcriptome.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.transcriptome.gdc_realn.bam 10404506004 BAM transcriptome harmonized CPTAC3 69debd30-86ca-43c1-b8a0-092cf2a5eb81 7d4e4389f31eecffc6d3a8c7af53764c {"aliquot_tag": "ALQ_e48805d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.WGS.A C3N-02142 LUAD WGS tissue_normal CPT0118530009 CPT0118530009.WholeGenome.RP-1303.bam 55619872624 BAM submitted_aligned CPTAC3 27631002-af91-42b7-a8fc-9fa029648d81 32cafdd277a0b61492c13ae6bc58b4bc {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.WGS.A.hg38 C3N-02142 LUAD WGS tissue_normal CPT0118530009 98b6469b-5549-4697-9956-9be5af2ed296_wgs_gdc_realn.bam 80413524966 BAM harmonized CPTAC3 42f6ba5b-a57d-45e1-8eb6-1deb9a118b94 21379a9911087f3a6d83765cfa6b4d84 {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.WGS.N C3N-02142 LUAD WGS blood_normal CPT0119750002 CPT0119750002.WholeGenome.RP-1303.bam 58130859670 BAM submitted_aligned CPTAC3 58455428-b128-473d-bcde-37bf9570c74e 134761e87aa6bfe0cbc82d48c20a6f93 {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02142.WGS.N.hg38 C3N-02142 LUAD WGS blood_normal CPT0119750002 4e49c64f-2a74-4408-921f-414b511e32af_wgs_gdc_realn.bam 87001001432 BAM harmonized CPTAC3 49729cb6-f10f-4413-8e27-9f4d611f9342 753b0dcd38236ca159dc7c2719caf1e9 {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02142.WGS.T C3N-02142 LUAD WGS tumor CPT0118510006 CPT0118510006.WholeGenome.RP-1303.bam 54159833665 BAM submitted_aligned CPTAC3 08e0fca3-6a2c-4855-8c35-cec9e9acfe50 89557c6f60bdc5052a9ac07ceca886f1 {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.WGS.T.hg38 C3N-02142 LUAD WGS tumor CPT0118510006 5da5e8dc-de54-4e99-9ebd-ebfd7c3929ec_wgs_gdc_realn.bam 78897402260 BAM harmonized CPTAC3 829a1129-86f7-411a-9b0c-9f0343d8f77a 7a26a9e53ea1f1f1457644af5fae25bf {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.WXS.A C3N-02142 LUAD WXS tissue_normal CPT0118530009 CPT0118530009.WholeExome.RP-1303.bam 36034856185 BAM submitted_aligned CPTAC3 ac2b5f0a-8f11-457c-ba3f-8046f3b65156 b9e1121dbe842bdc8420ac7e690e91f9 {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.WXS.A.hg38 C3N-02142 LUAD WXS tissue_normal CPT0118530009 98b6469b-5549-4697-9956-9be5af2ed296_wxs_gdc_realn.bam 48383502415 BAM harmonized CPTAC3 fc374d19-c4a2-4df1-821e-db59ad682a9a 3570adb673ec8e95180535d96afa5f71 {"aliquot_tag": "ALQ_9e4856b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02142.WXS.N C3N-02142 LUAD WXS blood_normal CPT0119750002 CPT0119750002.WholeExome.RP-1303.bam 31186140487 BAM submitted_aligned CPTAC3 cab9a8ee-c9bb-4b39-af45-3cbc00d3d981 d695d11cd8d4c08f409e1cc5c84e84ba {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02142.WXS.N.hg38 C3N-02142 LUAD WXS blood_normal CPT0119750002 4e49c64f-2a74-4408-921f-414b511e32af_wxs_gdc_realn.bam 41154793502 BAM harmonized CPTAC3 58028fd8-d6c1-46d0-911f-0d384d1f1fe0 60dcb36800bc5ace920a4861d59159b6 {"aliquot_tag": "ALQ_6d65d027", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02142.WXS.T C3N-02142 LUAD WXS tumor CPT0118510006 CPT0118510006.WholeExome.RP-1303.bam 37233943721 BAM submitted_aligned CPTAC3 101765e3-1283-4a07-a1a2-c48305fca50e 6304951c6d8b93eb17bfa335ce61ba62 {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02142.WXS.T.hg38 C3N-02142 LUAD WXS tumor CPT0118510006 5da5e8dc-de54-4e99-9ebd-ebfd7c3929ec_wxs_gdc_realn.bam 50535162562 BAM harmonized CPTAC3 3897f8fb-cc51-45ff-87f9-a3c425e4d773 94587168825a0b427a8f6474014f3a3c {"aliquot_tag": "ALQ_74371841", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.MethArray.Green.A C3N-02143 LUAD Methylation_Array tissue_normal CPT0213250006 203273630048_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 372d1766-f979-4b8b-9fe1-5c0b20394b87 8192b79867c408a5a939fba7490a89b3 {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.MethArray.Green.T C3N-02143 LUAD Methylation_Array tumor CPT0213230006 203561620091_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 2641be67-14fe-44ae-a390-0f8db78513aa 6b18f9d8beab451383216ddbd3c0b882 {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.MethArray.Red.A C3N-02143 LUAD Methylation_Array tissue_normal CPT0213250006 203273630048_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 81e003c8-3a90-4111-b795-91aafd09fa01 3b9473a3ab5992bbe630184e1678cb83 {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.MethArray.Red.T C3N-02143 LUAD Methylation_Array tumor CPT0213230006 203561620091_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 542a4636-4228-4d3a-9cbf-ec12ec321cce 141b20456d0de8c24ad5a5541bdc18dc {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.miRNA-Seq.A.hg38 C3N-02143 LUAD miRNA-Seq tissue_normal CPT0213250009 0618e73e-34d2-4b17-84ac-fe244f57d3d2_mirnaseq_gdc_realn.bam 249973840 BAM harmonized CPTAC3 c8dd0faf-16fa-48b9-9f00-6be322fe1799 f770e8ec4c09dd9f9ec59c2fbfbd7f29 {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.miRNA-Seq.S16_L005_R1.T C3N-02143 LUAD miRNA-Seq tumor CPT0213230009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGGCC_S16_L005_R1_001.unaln.bam 205547753 BAM S16_L005_R1 submitted_unaligned CPTAC3 ae04dd1f-33b0-48b6-9198-9816537bd38e 6b3d34b384c079bd9a685df139191174 {"aliquot_tag": "ALQ_b8c70e37", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.miRNA-Seq.S40_L007_R1.A C3N-02143 LUAD miRNA-Seq tissue_normal CPT0213250009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTAGAG_S40_L007_R1_001.unaln.bam 216176842 BAM S40_L007_R1 submitted_unaligned CPTAC3 89a72300-0da8-4a76-a67b-af5767c5d860 75bd8a69ba73502cf95da4adf1c1262f {"aliquot_tag": "ALQ_3787fb97", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.miRNA-Seq.T.hg38 C3N-02143 LUAD miRNA-Seq tumor CPT0213230009 815a1237-cc0a-4ddc-85fa-d5b4361ba214_mirnaseq_gdc_realn.bam 229185180 BAM harmonized CPTAC3 577f076b-dfb9-488d-af0e-e863d24c7a73 6b6e0107e781679ec37a7258af16b938 {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.RNA-Seq.chimeric.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.chimeric.gdc_realn.bam 42362471 BAM chimeric harmonized CPTAC3 b50e8dc2-7066-4287-9693-548a66e4833f d46484613c2230d6296cac9464844776 {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.RNA-Seq.chimeric.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.chimeric.gdc_realn.bam 25643779 BAM chimeric harmonized CPTAC3 89cc83ea-85a9-473c-9308-95316364f368 544a1eeb3261a989d712855eb7e6d298 {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.RNA-Seq.genomic.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.genomic.gdc_realn.bam 10063332985 BAM genomic harmonized CPTAC3 ac5bb987-3757-4f4d-9e77-a3e0dda6fb5e 4df6c0ac4758e9eeb2adb9a850779d4a {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.RNA-Seq.genomic.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.genomic.gdc_realn.bam 11512680211 BAM genomic harmonized CPTAC3 c353019a-3a23-4532-adc8-d3331d93fbd4 f741d65214dd446e525aed0b3be2f2cb {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.RNA-Seq.S12_L004_R1.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R1_001.fastq.gz 4520365189 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 c1b5ef04-f445-4b9c-9502-79dc3e160578 ca259288a91720a4887bf48d8f08b522 {"aliquot_tag": "ALQ_3787fb97", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.RNA-Seq.S12_L004_R2.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R2_001.fastq.gz 4686036450 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 5594487e-11bd-4e77-b933-5ce3d262567e 7cd68af51ae70a5e7e60c0b2365233d0 {"aliquot_tag": "ALQ_3787fb97", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.RNA-Seq.S7_L002_R1.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R1_001.fastq.gz 3542619521 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 9a85fb5a-6bb5-43c2-8ee4-6d1e8139a080 6d56298cf7a79f7a5afbf5eb95c2349f {"aliquot_tag": "ALQ_b8c70e37", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.RNA-Seq.S7_L002_R2.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R2_001.fastq.gz 4064404369 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 8f9ad4da-ea85-48cf-be30-ed1b51ebaefb 79a4ae00b0f41d3a3baf5ac28f8b1019 {"aliquot_tag": "ALQ_b8c70e37", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.RNA-Seq.transcriptome.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.transcriptome.gdc_realn.bam 10860429996 BAM transcriptome harmonized CPTAC3 f0eb1d49-b049-41d8-9e4c-437f77159ee2 af02f9060117f3fa8ef5612be664f430 {"aliquot_tag": "ALQ_3787fb97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.RNA-Seq.transcriptome.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.transcriptome.gdc_realn.bam 8593571291 BAM transcriptome harmonized CPTAC3 df2703e5-2296-4669-b617-783cb3bb69a3 8fc0a6b834234a1c5e554fba48c3e4f3 {"aliquot_tag": "ALQ_b8c70e37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.WGS.N C3N-02143 LUAD WGS blood_normal CPT0213330002 CPT0213330002.WholeGenome.RP-1303.bam 57404187699 BAM submitted_aligned CPTAC3 4da6d60c-7d39-45f3-b787-a1d97495281f c7bb6b50b838bdc8c7e31cc99ef3b52d {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02143.WGS.N.hg38 C3N-02143 LUAD WGS blood_normal CPT0213330002 1fe77e66-a0db-4835-9ca3-811e8199e906_wgs_gdc_realn.bam 83482726053 BAM harmonized CPTAC3 56daee9a-072e-4060-91f4-88403cf18a5e 2af7a5a3a5c7a7c335cef50eb522667d {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02143.WGS.T C3N-02143 LUAD WGS tumor CPT0213230006 CPT0213230006.WholeGenome.RP-1303.bam 69465345124 BAM submitted_aligned CPTAC3 c417af26-46dd-427a-8cdd-5a489111cf4c c6517bdd41404e17858019c8563f315f {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.WGS.T.hg38 C3N-02143 LUAD WGS tumor CPT0213230006 bb8b8ae5-695c-471e-a645-c92387ff095e_wgs_gdc_realn.bam 101006269619 BAM harmonized CPTAC3 dabbfe22-9e01-4188-a89b-44e047d2d0bf c5f495839bbb64803822af9fa8be1985 {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.WXS.A C3N-02143 LUAD WXS tissue_normal CPT0213250006 CPT0213250006.WholeExome.RP-1303.bam 31881888064 BAM submitted_aligned CPTAC3 f43259b1-f53d-46e8-b8f6-790fc5fb8a8e 1574356ce86480d52838e3ccfc8ce52f {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.WXS.A.hg38 C3N-02143 LUAD WXS tissue_normal CPT0213250006 e81ad2e8-4887-42a6-81eb-a75bb132f21b_wxs_gdc_realn.bam 44103991553 BAM harmonized CPTAC3 726d53b7-205a-41bc-b42a-abe049ff7622 414370188d9be67cd44367ae83b2cc70 {"aliquot_tag": "ALQ_a738e606", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02143.WXS.N C3N-02143 LUAD WXS blood_normal CPT0213330002 CPT0213330002.WholeExome.RP-1303.bam 29572820014 BAM submitted_aligned CPTAC3 ef0cf61a-6186-4a17-a65c-6da54cd5d2ae d33f0cb08c6f070722fe84f2c11a6fbd {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02143.WXS.N.hg38 C3N-02143 LUAD WXS blood_normal CPT0213330002 1fe77e66-a0db-4835-9ca3-811e8199e906_wxs_gdc_realn.bam 40247475622 BAM harmonized CPTAC3 fa3e3c90-31ee-4bdd-9bb5-0528924387d7 55275608b00cf9c0a773bce4c2501583 {"aliquot_tag": "ALQ_e449041a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02143.WXS.T C3N-02143 LUAD WXS tumor CPT0213230006 CPT0213230006.WholeExome.RP-1303.bam 27374825126 BAM submitted_aligned CPTAC3 0b47d843-8f44-411a-ab8d-bd7348885af5 c6134f2fba0e6f707af71e89a4e045dc {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02143.WXS.T.hg38 C3N-02143 LUAD WXS tumor CPT0213230006 bb8b8ae5-695c-471e-a645-c92387ff095e_wxs_gdc_realn.bam 37784256703 BAM harmonized CPTAC3 44e92b8c-5ffc-4dd4-9a73-f92fa239757e 31d8410526b7a4f3cb29d8704b9776c4 {"aliquot_tag": "ALQ_287813a6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.MethArray.Green.A C3N-02144 LUAD Methylation_Array tissue_normal CPT0213430006 203219650006_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 e673f23e-2353-46ef-9add-3f33526442ac 7c82c514bc9f5153481ca0096eeb21b8 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.MethArray.Green.T C3N-02144 LUAD Methylation_Array tumor CPT0213400009 203219640095_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f4ee63a4-e943-444c-b552-5448a8895ae0 c9f949561f20e17a6229e2562ffc0636 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.MethArray.Red.A C3N-02144 LUAD Methylation_Array tissue_normal CPT0213430006 203219650006_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 dde10117-762b-41d1-8d55-c7f1feff5127 2df8ce4556c191213b2de5284c2189bb {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.MethArray.Red.T C3N-02144 LUAD Methylation_Array tumor CPT0213400009 203219640095_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 9975b9bf-2e6c-40a1-95af-0e21b63b9480 7ddf646ce8b8fac96450c830864343a7 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.miRNA-Seq.A.hg38 C3N-02144 LUAD miRNA-Seq tissue_normal CPT0213430009 3f357d5d-c2b0-4ade-b518-baa5487d573d_mirnaseq_gdc_realn.bam 284479151 BAM harmonized CPTAC3 7d1b0b4b-8a82-466e-a337-6e6448d0e10c 4c340d784ea6867ff65705892db08806 {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.miRNA-Seq.S34_L007_R1.T C3N-02144 LUAD miRNA-Seq tumor CPT0213400006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L007_R1_001.unaln.bam 157050378 BAM S34_L007_R1 submitted_unaligned CPTAC3 a7e6c91b-0be1-4932-be3a-af742b0de7b1 a0a244f616894d0336122c7cda5ea886 {"aliquot_tag": "ALQ_b9818a6b", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.miRNA-Seq.S6_L006_R1.A C3N-02144 LUAD miRNA-Seq tissue_normal CPT0213430009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L006_R1_001.unaln.bam 257014102 BAM S6_L006_R1 submitted_unaligned CPTAC3 f99c3b71-5854-407c-8b41-00ec71a67fde 9965d7e0239d85d3bf969e912a171e63 {"aliquot_tag": "ALQ_6e9eed2a", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.miRNA-Seq.T.hg38 C3N-02144 LUAD miRNA-Seq tumor CPT0213400006 ab2cad16-da9a-42cf-a735-c3792d89f43b_mirnaseq_gdc_realn.bam 169908057 BAM harmonized CPTAC3 3c01c951-0963-4730-a335-8d9b3e293c3a 8c3941591a7162ba62da836fe2afbeac {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.RNA-Seq.chimeric.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.chimeric.gdc_realn.bam 38255706 BAM chimeric harmonized CPTAC3 c5c254db-0f45-4c7c-8972-4b74a5eb8fd9 d5276d6958d82e2c4e3bfe5783378eb0 {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.RNA-Seq.chimeric.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.chimeric.gdc_realn.bam 44644956 BAM chimeric harmonized CPTAC3 358c5837-d72f-43ba-beef-2ac301a1ba06 1ff705ba6ba133bd35fdc9700a47c132 {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.RNA-Seq.genomic.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.genomic.gdc_realn.bam 8370147068 BAM genomic harmonized CPTAC3 8a8efd03-95f0-4843-a22d-0483ccc7eef4 594a2daef9c2dc785b572ffc2f98a9e4 {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.RNA-Seq.genomic.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.genomic.gdc_realn.bam 7694305409 BAM genomic harmonized CPTAC3 367ee2a9-4a24-45ec-831f-fbe24984b5c7 fc021668e15aacb2f087909fdb62f6c2 {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.RNA-Seq.S5_L002_R1.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3484027388 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 5dea3bd7-2f8e-440c-810d-281806b7051b baf75b3fa82747f1d38a3f7c580b71e4 {"aliquot_tag": "ALQ_b9818a6b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.RNA-Seq.S5_L002_R2.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3766925002 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 faa18593-2dff-4a1a-8423-a381f05e86fd 069a27d1e50c911e5a9460055485f5d9 {"aliquot_tag": "ALQ_b9818a6b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.RNA-Seq.S9_L003_R1.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3543017372 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 39aef709-7338-42c2-9a5f-d5a7480416d2 565db775a5efff44092ac54fe2e020ff {"aliquot_tag": "ALQ_6e9eed2a", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.RNA-Seq.S9_L003_R2.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3956840810 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 6e6d7a13-f59a-4443-a4fa-86fdaf9fac26 cdb92cd57f00c7e9cc185aeccc30c5dd {"aliquot_tag": "ALQ_6e9eed2a", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.RNA-Seq.transcriptome.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.transcriptome.gdc_realn.bam 9600167629 BAM transcriptome harmonized CPTAC3 f48e24c9-eda8-48bf-84b5-a0e59aeb9c7d 052330b39551ae0f82c1c0ccff7eac0f {"aliquot_tag": "ALQ_6e9eed2a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.RNA-Seq.transcriptome.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.transcriptome.gdc_realn.bam 9798540656 BAM transcriptome harmonized CPTAC3 877e89d0-7535-4177-acc7-dc8b67901e2a f921fa6571bf6578dbc634d6dd13e2cf {"aliquot_tag": "ALQ_b9818a6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.WGS.A C3N-02144 LUAD WGS tissue_normal CPT0213430006 CPT0213430006.WholeGenome.RP-1303.bam 60026135486 BAM submitted_aligned CPTAC3 9e3aec60-f247-4e12-a652-643315f2a456 cb4168ff0329612eb256aa076950aa7c {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.WGS.A.hg38 C3N-02144 LUAD WGS tissue_normal CPT0213430006 a12610f8-08ef-4ccf-8867-0b3e81a115cf_wgs_gdc_realn.bam 86874595021 BAM harmonized CPTAC3 c734e1f1-fd9e-4f86-9224-edc90e726f4d b3e7786a28355a94ee3383a23006cc19 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.WGS.N C3N-02144 LUAD WGS blood_normal CPT0213510002 CPT0213510002.WholeGenome.RP-1303.bam 58616982436 BAM submitted_aligned CPTAC3 4c1ffb4a-99be-4b2e-8940-cc59cee822e6 7fcd27635033273acb4ec494f7cbe9f8 {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02144.WGS.N.hg38 C3N-02144 LUAD WGS blood_normal CPT0213510002 10f4d713-27f7-4028-9cbe-7d7c13bc68f9_wgs_gdc_realn.bam 86324212139 BAM harmonized CPTAC3 fb9f6ff8-d5a4-44cf-9b5b-a28ff2fd545e c576c3f38623738aadb8bb23e24c84f4 {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02144.WGS.T C3N-02144 LUAD WGS tumor CPT0213400009 CPT0213400009.WholeGenome.RP-1303.bam 66354681910 BAM submitted_aligned CPTAC3 34df3749-ddf3-4867-b6b9-a4e919ddac5b 82a49b2e9dc886b024086d5e6d02fef2 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.WGS.T.hg38 C3N-02144 LUAD WGS tumor CPT0213400009 7295c9c9-2c79-4369-8516-8193188df19a_wgs_gdc_realn.bam 95795942041 BAM harmonized CPTAC3 f09475b5-0df7-44c9-bbb1-9e5148a0097e 594fc70c3dc773e4da4a23d8003f94f5 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.WXS.A C3N-02144 LUAD WXS tissue_normal CPT0213430006 CPT0213430006.WholeExome.RP-1303.bam 18661379879 BAM submitted_aligned CPTAC3 37f012e9-e8af-4522-8fbe-215311235411 0e8bd4355892a7e7227105b1827261e2 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.WXS.A.hg38 C3N-02144 LUAD WXS tissue_normal CPT0213430006 a12610f8-08ef-4ccf-8867-0b3e81a115cf_wxs_gdc_realn.bam 25998825089 BAM harmonized CPTAC3 b8d48d6d-0156-4128-ab0f-81645f7b9047 eb4b5490d49ac796047422cf62a55c51 {"aliquot_tag": "ALQ_fe21f0bb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02144.WXS.N C3N-02144 LUAD WXS blood_normal CPT0213510002 CPT0213510002.WholeExome.RP-1303.bam 23436958534 BAM submitted_aligned CPTAC3 d435812d-c333-4fca-97a5-ff5ee45b1988 7cac3e93d46bd4de86c66062e2880f3e {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02144.WXS.N.hg38 C3N-02144 LUAD WXS blood_normal CPT0213510002 10f4d713-27f7-4028-9cbe-7d7c13bc68f9_wxs_gdc_realn.bam 31982259877 BAM harmonized CPTAC3 4bd492f5-2f8b-440e-ab46-f4fcc48454ab c0754fc4013c91c40cb0936a01d61ade {"aliquot_tag": "ALQ_48d0b467", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02144.WXS.T C3N-02144 LUAD WXS tumor CPT0213400009 CPT0213400009.WholeExome.RP-1303.bam 22036477295 BAM submitted_aligned CPTAC3 eac40a7f-ff3c-4d3c-aeef-fcc2e776cf56 0c928d6e86844932420a981617fb5f9d {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02144.WXS.T.hg38 C3N-02144 LUAD WXS tumor CPT0213400009 7295c9c9-2c79-4369-8516-8193188df19a_wxs_gdc_realn.bam 30414668070 BAM harmonized CPTAC3 d91a24cf-44c0-4404-8274-42daf7c8de82 af61331316535079a1c10f8b88d247d0 {"aliquot_tag": "ALQ_293e97fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.MethArray.Green.A C3N-02145 LUAD Methylation_Array tissue_normal CPT0118600008 203027390105_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b7e7d881-87ef-41f0-9b86-0dca8cd5a09b 3d6f2f4f9832d8e908cd7bd24bd82e76 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.MethArray.Green.T C3N-02145 LUAD Methylation_Array tumor CPT0118570006 202234380094_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 fc001a4a-21d5-48ff-bafa-f6971b7f015a 6c085100ad9ad63aca284c9a5e4ede6a {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.MethArray.Red.A C3N-02145 LUAD Methylation_Array tissue_normal CPT0118600008 203027390105_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 03146dfc-541d-46c2-aa65-419d859895ae 735f992d2e43e0857cfd832eafdd8ae7 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.MethArray.Red.T C3N-02145 LUAD Methylation_Array tumor CPT0118570006 202234380094_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 46a39240-fc50-4e6d-b072-329f44ea4005 a588115df1910fc3450dc002200be8fc {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.miRNA-Seq.A.hg38 C3N-02145 LUAD miRNA-Seq tissue_normal CPT0118600006 64131159-b16b-4bf3-a478-1886f4f5c7a9_mirnaseq_gdc_realn.bam 271387133 BAM harmonized CPTAC3 e9c9948b-ad8a-4fec-96fc-db73b064ef8c fefbf726260d7ed782627ae7b450a1bd {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.miRNA-Seq.S17_L004_R1.T C3N-02145 LUAD miRNA-Seq tumor CPT0118570009 181119_UNC31-K00269_0165_AH27WCBBXY_GACGAC_S17_L004_R1_001.unaln.bam 276742128 BAM S17_L004_R1 submitted_unaligned CPTAC3 1def2f41-b387-4f61-b593-285bbba89d43 2e818129f28249cbe3d34ceccfa4026e {"aliquot_tag": "ALQ_6bc8f070", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.miRNA-Seq.S42_L005_R1.A C3N-02145 LUAD miRNA-Seq tissue_normal CPT0118600006 181108_UNC31-K00269_0162_AH255GBBXY_GTCCGC_S42_L005_R1_001.unaln.bam 246834425 BAM S42_L005_R1 submitted_unaligned CPTAC3 184ce297-4734-4818-aa52-11d548845b1f f8d007d8f850b0fedc4eed17dfb82b8e {"aliquot_tag": "ALQ_cfc3435f", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.miRNA-Seq.T.hg38 C3N-02145 LUAD miRNA-Seq tumor CPT0118570009 e6f04a8d-fe6e-4fdf-b126-4e5ac2416d3e_mirnaseq_gdc_realn.bam 299205243 BAM harmonized CPTAC3 c21ea4eb-9d42-4e7b-aee3-9c817416a8a8 f5cda125a7f9fea9b191a8c274eee524 {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.RNA-Seq.chimeric.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.chimeric.gdc_realn.bam 132927427 BAM chimeric harmonized CPTAC3 1e9b9880-7fa9-41bc-b714-8012b6d9fdc1 ed6c4c1efa8dca058545958777098ba1 {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.RNA-Seq.chimeric.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.chimeric.gdc_realn.bam 142856390 BAM chimeric harmonized CPTAC3 9c319a4b-e6d5-4bb7-bbcf-5bb5fc70e9de 0e9743810977e869b5ae79339646bbf6 {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.RNA-Seq.genomic.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.genomic.gdc_realn.bam 8367415124 BAM genomic harmonized CPTAC3 9bfae709-1420-4f7d-84fa-794972ddd474 ef0ff143688eb80274d706d76f391eee {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.RNA-Seq.genomic.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.genomic.gdc_realn.bam 10460715105 BAM genomic harmonized CPTAC3 30fe7a9f-55b5-4f3b-95ea-fa2ad5ca2054 64686f7b9de36cdbd387f23c974c061f {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.RNA-Seq.S1_L007_R1.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4560885545 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 560ee59e-a8eb-4b33-a3c4-e80c56e012f3 569fd6cdca5de14c2eda92757c1bc00a {"aliquot_tag": "ALQ_6bc8f070", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.RNA-Seq.S1_L007_R2.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4997975061 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 67bb9f61-dd97-4785-bb1a-8f046fe57cae 80127fd0425ddc8daa859a8e926999ca {"aliquot_tag": "ALQ_6bc8f070", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.RNA-Seq.S22_L007_R1.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R1_001.fastq.gz 4007829372 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 849ef78b-5cda-4554-a758-d07240117226 39153f606c5c6e562d9adc658e5c8913 {"aliquot_tag": "ALQ_cfc3435f", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.RNA-Seq.S22_L007_R2.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R2_001.fastq.gz 4151806539 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 c2cf65f7-c9b9-4452-85e9-c2199358cae2 5227b35b6915a792ddb6c6789f5b5f33 {"aliquot_tag": "ALQ_cfc3435f", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.RNA-Seq.transcriptome.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.transcriptome.gdc_realn.bam 10503889716 BAM transcriptome harmonized CPTAC3 58a9dd9d-4095-433d-a916-9630b6ff9a56 62fa376b17ba52483ddedb829ca48a25 {"aliquot_tag": "ALQ_cfc3435f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.RNA-Seq.transcriptome.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.transcriptome.gdc_realn.bam 11829743851 BAM transcriptome harmonized CPTAC3 ea66a677-de0e-4403-86be-0ae5402f67f1 4b4433c7daf58f939bbb480a52528968 {"aliquot_tag": "ALQ_6bc8f070", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.WGS.A C3N-02145 LUAD WGS tissue_normal CPT0118600008 CPT0118600008.WholeGenome.RP-1303.bam 60454307716 BAM submitted_aligned CPTAC3 1c342b77-1ccd-47d6-9d5e-c9bb57687a35 e69a71e108e9039ed4685e2cc4c50081 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.WGS.A.hg38 C3N-02145 LUAD WGS tissue_normal CPT0118600008 132717f2-7e89-446b-a32c-6d186aeabd07_wgs_gdc_realn.bam 90402520354 BAM harmonized CPTAC3 763f4549-1e94-436b-9bc5-74bdcb1d3caf 0b874fb70095865704a6de41740937fa {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.WGS.N C3N-02145 LUAD WGS blood_normal CPT0119810002 CPT0119810002.WholeGenome.RP-1303.bam 58499340321 BAM submitted_aligned CPTAC3 84ef61c3-73b1-4123-b1ba-7708de4171cb 16243c3dcdf5e6b2d1e399bc865db523 {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02145.WGS.N.hg38 C3N-02145 LUAD WGS blood_normal CPT0119810002 62430f39-b7bd-4c7a-8ff1-515876e9a2c0_wgs_gdc_realn.bam 87369376161 BAM harmonized CPTAC3 ee798bc4-720d-4367-ac5c-9e22ac0b1d0b 8fc828d1c75bd47dd20fff493c56c76e {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02145.WGS.T C3N-02145 LUAD WGS tumor CPT0118570006 CPT0118570006.WholeGenome.RP-1303.bam 64806283770 BAM submitted_aligned CPTAC3 28e03324-ca8c-46c4-b53c-6c0f820a1ad9 0d97779855be5163f73fa39705a340ce {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.WGS.T.hg38 C3N-02145 LUAD WGS tumor CPT0118570006 3c404945-7719-486d-9cdc-b47d6aa903c4_wgs_gdc_realn.bam 94700020338 BAM harmonized CPTAC3 fe5030c1-a4a0-432c-b6c1-c38116b89a64 ff6e6edd444b5abf9bcebf8b04cffdc1 {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.WXS.A C3N-02145 LUAD WXS tissue_normal CPT0118600008 CPT0118600008.WholeExome.RP-1303.bam 31883138286 BAM submitted_aligned CPTAC3 66abf167-b3a1-4e79-86b3-c7b4008074cb 6d70578de6f979567d8b7d822a22ddc4 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.WXS.A.hg38 C3N-02145 LUAD WXS tissue_normal CPT0118600008 132717f2-7e89-446b-a32c-6d186aeabd07_wxs_gdc_realn.bam 43890705503 BAM harmonized CPTAC3 804c6f26-d695-417e-b423-87f56ccabbbe b0703d366dab20d7b46e12f26687d4f2 {"aliquot_tag": "ALQ_287b6e58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02145.WXS.N C3N-02145 LUAD WXS blood_normal CPT0119810002 CPT0119810002.WholeExome.RP-1303.bam 51678363808 BAM submitted_aligned CPTAC3 c4831146-1ff1-4977-b1af-9807cc203069 fbf7d89626a8a8e43b1d455e9259c1be {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02145.WXS.N.hg38 C3N-02145 LUAD WXS blood_normal CPT0119810002 62430f39-b7bd-4c7a-8ff1-515876e9a2c0_wxs_gdc_realn.bam 68384859286 BAM harmonized CPTAC3 08f29362-1f2b-4678-839d-cebfa79689a7 f32418f891aaff7c557b1948d3f366cf {"aliquot_tag": "ALQ_69b3c432", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02145.WXS.T C3N-02145 LUAD WXS tumor CPT0118570006 CPT0118570006.WholeExome.RP-1303.bam 34515481428 BAM submitted_aligned CPTAC3 f5ab4d45-7b4e-440c-8c65-ffd735cf945c ccb545cc12a37db9d1af1eb6337960f0 {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02145.WXS.T.hg38 C3N-02145 LUAD WXS tumor CPT0118570006 3c404945-7719-486d-9cdc-b47d6aa903c4_wxs_gdc_realn.bam 47759048627 BAM harmonized CPTAC3 cd82f96e-95e3-4cb7-84f5-680e9badc216 24bf349e0cfca5ec0134dda323ff4487 {"aliquot_tag": "ALQ_fb77ede1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.MethArray.Green.A C3N-02146 LUAD Methylation_Array tissue_normal CPT0213610006 203220070100_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 622c35fc-5235-4d4a-a3d1-8defb7b8d0c7 af88067ac0232e9e32af52980bba4701 {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.MethArray.Green.T C3N-02146 LUAD Methylation_Array tumor CPT0213600009 203219670106_R03C01_Grn.idat 13676241 IDAT Green NA CPTAC3 e5d2bed4-9c39-4c3b-bc33-9bcb8a21793a 4c9668ca7552f535a82f29f3854f9ba5 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.MethArray.Red.A C3N-02146 LUAD Methylation_Array tissue_normal CPT0213610006 203220070100_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 27b66423-65aa-4f34-b427-a07344635713 9e909b72d31f5147bd62c7b6256cd919 {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.MethArray.Red.T C3N-02146 LUAD Methylation_Array tumor CPT0213600009 203219670106_R03C01_Red.idat 13676241 IDAT Red NA CPTAC3 a59f1698-2b5d-4a2c-840c-32da25d5d41b 205649b2b4b41325b1bc1d1952076e17 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.miRNA-Seq.A.hg38 C3N-02146 LUAD miRNA-Seq tissue_normal CPT0213610009 da7a2f39-e64c-4fbb-890a-f2376b19546e_mirnaseq_gdc_realn.bam 302400847 BAM harmonized CPTAC3 58b43116-eef1-46bf-b969-6f6c067611ca 6219c4a65b2a5e431d3d2ee3e8f7febf {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.miRNA-Seq.S17_L004_R1.A C3N-02146 LUAD miRNA-Seq tissue_normal CPT0213610009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L004_R1_001.unaln.bam 268568864 BAM S17_L004_R1 submitted_unaligned CPTAC3 a9270b95-37ef-462f-88bc-e27759d34ef7 99f23679d4aba22ea7d912800ae4e611 {"aliquot_tag": "ALQ_59961f41", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.miRNA-Seq.S29_L007_R1.T C3N-02146 LUAD miRNA-Seq tumor CPT0213600006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L007_R1_001.unaln.bam 212464348 BAM S29_L007_R1 submitted_unaligned CPTAC3 a7ff1a54-1213-4d89-9fb4-17811df07cac d54dabea2c392edf391400162b6c1d16 {"aliquot_tag": "ALQ_f4492b60", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.miRNA-Seq.T.hg38 C3N-02146 LUAD miRNA-Seq tumor CPT0213600006 b11aff8f-8275-4e00-bf29-0afcd85a2efe_mirnaseq_gdc_realn.bam 229393465 BAM harmonized CPTAC3 030a362b-9c18-467a-a0d7-c24489b1a581 c9871d24501618a030add714afb4a047 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.RNA-Seq.chimeric.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.chimeric.gdc_realn.bam 40885283 BAM chimeric harmonized CPTAC3 d8bc1b3e-ec41-44b0-bc59-3c99402b9f95 7d5333ccbba7dd9d530f48dc42f271cc {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.RNA-Seq.chimeric.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.chimeric.gdc_realn.bam 50710805 BAM chimeric harmonized CPTAC3 5593ef8f-1d2c-4305-9fc9-7b6ea6d52704 d5a6956953bc332875e681a09afc9171 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.RNA-Seq.genomic.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.genomic.gdc_realn.bam 9978139725 BAM genomic harmonized CPTAC3 ff1f7439-fb2e-4d1d-876d-9f84f14aaf4b d5646b2ee504e7d687970f2753d3aa7b {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.RNA-Seq.genomic.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.genomic.gdc_realn.bam 9508193362 BAM genomic harmonized CPTAC3 72c2c989-022f-4bef-a6b9-d78382137efa 5157557512cf49c3d7cc08616c208001 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.RNA-Seq.S7_L002_R1.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R1_001.fastq.gz 4613353599 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 9824d156-b308-47e5-819f-b8eef22edab5 259b460bf941125ad9735c14727bbd0f {"aliquot_tag": "ALQ_59961f41", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.RNA-Seq.S7_L002_R2.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R2_001.fastq.gz 4686371419 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 9bdcac28-c86c-4ff3-9711-6c8a95f88051 b5bc8bf421ea544d69ce1f5c58a04774 {"aliquot_tag": "ALQ_59961f41", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.RNA-Seq.S8_L008_R1.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R1_001.fastq.gz 3957059737 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 5d4d4ccc-ce37-4363-84a2-6558a2c7b796 a0e869ad38becd4ba3f7b1f95deeac11 {"aliquot_tag": "ALQ_f4492b60", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.RNA-Seq.S8_L008_R2.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R2_001.fastq.gz 4386323282 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 5465f0fb-3df4-47c6-8690-20a5f71e9b0a 57036851d10f83f21e0aa39f2900d5d0 {"aliquot_tag": "ALQ_f4492b60", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.RNA-Seq.transcriptome.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.transcriptome.gdc_realn.bam 11442920258 BAM transcriptome harmonized CPTAC3 8fe0ee27-de8a-4a0e-8632-b09d5189ee7e c55674a3c1de250be63b22b39ed759e1 {"aliquot_tag": "ALQ_59961f41", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.RNA-Seq.transcriptome.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.transcriptome.gdc_realn.bam 8873871717 BAM transcriptome harmonized CPTAC3 4b49fa4c-f2c9-4f00-8b79-9c6914719807 1f96dd31a3d6e3e996da62fb48a15213 {"aliquot_tag": "ALQ_f4492b60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.WGS.A C3N-02146 LUAD WGS tissue_normal CPT0213610006 CPT0213610006.WholeGenome.RP-1303.bam 58227869637 BAM submitted_aligned CPTAC3 c3a1d2b7-d344-4c44-8b33-f7f2bc3bcdcb 36d10cc8b9094937ebca549549419dec {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.WGS.A.hg38 C3N-02146 LUAD WGS tissue_normal CPT0213610006 646adfc3-9a79-48bd-b65d-b7e3b44901e7_wgs_gdc_realn.bam 85979883907 BAM harmonized CPTAC3 69552701-8340-477e-b652-15fad0989430 ccec0d66301ace893300f4f2cf0e9d56 {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.WGS.N C3N-02146 LUAD WGS blood_normal CPT0213690002 CPT0213690002.WholeGenome.RP-1303.bam 57302327942 BAM submitted_aligned CPTAC3 56af6184-5441-4670-9332-86261208b195 4534b173867321363d963b0294de7182 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02146.WGS.N.hg38 C3N-02146 LUAD WGS blood_normal CPT0213690002 ce7fd37a-df61-460a-b503-62afc4e68aed_wgs_gdc_realn.bam 84181065921 BAM harmonized CPTAC3 7ae29f78-2743-4f32-b986-7b3e02e95c9c c40bed34232ac978c2cea6fcd21317d5 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02146.WGS.T C3N-02146 LUAD WGS tumor CPT0213600009 CPT0213600009.WholeGenome.RP-1303.bam 75139040982 BAM submitted_aligned CPTAC3 369ef04b-ae8c-489b-b367-039910cb9165 fd15b0a62bf29b1a905d21f60c50f72d {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.WGS.T.hg38 C3N-02146 LUAD WGS tumor CPT0213600009 934812b3-c6a6-49a9-bd08-1c3d5fce1b5c_wgs_gdc_realn.bam 107563708907 BAM harmonized CPTAC3 f39bb257-ede9-4fa1-b17b-b26470bf9e75 a30f61158649d86cc634506138613af5 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.WXS.A C3N-02146 LUAD WXS tissue_normal CPT0213610006 CPT0213610006.WholeExome.RP-1303.bam 24562726540 BAM submitted_aligned CPTAC3 9ad26bb5-4813-4dc4-b889-355912991579 373f2e9bc4807047a89c857de759a0fe {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.WXS.A.hg38 C3N-02146 LUAD WXS tissue_normal CPT0213610006 646adfc3-9a79-48bd-b65d-b7e3b44901e7_wxs_gdc_realn.bam 34405378315 BAM harmonized CPTAC3 edf762ae-0e65-4e86-a2b0-f2a654ee0ec7 69aa1d3a1aaa80f0e0c6146a81b6526b {"aliquot_tag": "ALQ_c92902d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02146.WXS.N C3N-02146 LUAD WXS blood_normal CPT0213690002 CPT0213690002.WholeExome.RP-1303.bam 30538664092 BAM submitted_aligned CPTAC3 98718567-706d-4aed-a3d2-0a6a8725a884 7dd19188d2bb67a3e9446891109771a2 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02146.WXS.N.hg38 C3N-02146 LUAD WXS blood_normal CPT0213690002 ce7fd37a-df61-460a-b503-62afc4e68aed_wxs_gdc_realn.bam 41321630954 BAM harmonized CPTAC3 4cca5445-c281-4e6e-8d38-558b87dcf955 7aa04cb100c171f1b9c47d1d63603fe5 {"aliquot_tag": "ALQ_fe348d08", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02146.WXS.T C3N-02146 LUAD WXS tumor CPT0213600009 CPT0213600009.WholeExome.RP-1303.bam 30211451138 BAM submitted_aligned CPTAC3 ed5b1a19-7e87-4923-8799-5c94f43ecbcb 2da11e953040d76c05d21a32702d1e9a {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02146.WXS.T.hg38 C3N-02146 LUAD WXS tumor CPT0213600009 934812b3-c6a6-49a9-bd08-1c3d5fce1b5c_wxs_gdc_realn.bam 41921689256 BAM harmonized CPTAC3 ba8734f5-13d2-4bb2-8fb1-4ab756fa10fd b1e418b15871e20675c137dee420e6b8 {"aliquot_tag": "ALQ_64f636f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.MethArray.Green.A C3N-02149 LUAD Methylation_Array tissue_normal CPT0118650009 203027390118_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fb9a7d1c-1728-49d2-9d18-c525247e7fa8 12fe557dbd8669f3dbff6f4509495a01 {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.MethArray.Green.T C3N-02149 LUAD Methylation_Array tumor CPT0118620006 202234370095_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 b1cd2ae2-2687-4ac3-b6bd-45248670144c 40397aaf00ee240fe2ed8b276733069c {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.MethArray.Red.A C3N-02149 LUAD Methylation_Array tissue_normal CPT0118650009 203027390118_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 359d4c9c-5820-4779-8d95-06d33d2ad996 9200f24897c3bb1baec51cd76d8df7ec {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.MethArray.Red.T C3N-02149 LUAD Methylation_Array tumor CPT0118620006 202234370095_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 1c1bcb59-dfeb-4bd3-bc8d-baf2c990efc2 8fd0b52768c93dbfd964f30b33016a13 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.miRNA-Seq.A.hg38 C3N-02149 LUAD miRNA-Seq tissue_normal CPT0118650006 45bdbc97-75c5-4b52-bda7-3bac221e127e_mirnaseq_gdc_realn.bam 249635996 BAM harmonized CPTAC3 6f4d000d-7778-4d3d-a924-e6145314bc8e fd8f02294ddfbd5d9ba256d685d0fdd2 {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.miRNA-Seq.S18_L004_R1.T C3N-02149 LUAD miRNA-Seq tumor CPT0118620009 181119_UNC31-K00269_0165_AH27WCBBXY_TAATCG_S18_L004_R1_001.unaln.bam 195457399 BAM S18_L004_R1 submitted_unaligned CPTAC3 63f416e9-7261-47da-9f6f-0a298c7992d4 5f23dcf4874af2b6b4a5b394d801074b {"aliquot_tag": "ALQ_25bc0dae", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.miRNA-Seq.S43_L006_R1.A C3N-02149 LUAD miRNA-Seq tissue_normal CPT0118650006 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L006_R1_001.unaln.bam 227431174 BAM S43_L006_R1 submitted_unaligned CPTAC3 221a95fa-afa8-4542-b2b7-b3bcd27c558d 11f003c351c5cbc00df7b541e2d20aa4 {"aliquot_tag": "ALQ_723cc2f", "sample": "S43", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.miRNA-Seq.T.hg38 C3N-02149 LUAD miRNA-Seq tumor CPT0118620009 00766340-ae8f-4cb4-8473-9fe435c6e671_mirnaseq_gdc_realn.bam 214124021 BAM harmonized CPTAC3 cf4c500c-1055-4ee9-a36d-52c2a9a7eae3 07be32f04ced2295ef158df47ffdff29 {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.RNA-Seq.chimeric.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.chimeric.gdc_realn.bam 141987760 BAM chimeric harmonized CPTAC3 a01a6717-2b8b-41c8-9768-86563fa00f21 00a6e076c6cd8a9f63ca41ec3b28d0ce {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.RNA-Seq.chimeric.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.chimeric.gdc_realn.bam 112408969 BAM chimeric harmonized CPTAC3 14228ccd-572e-4eb2-a3ab-e067b7b7b5e8 46f387a7d7be181cd8e5ea5a6a4a8823 {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.RNA-Seq.genomic.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.genomic.gdc_realn.bam 9108971482 BAM genomic harmonized CPTAC3 65610ae5-480c-4cec-a39d-b03d29c2ffd4 48899e2428344c6bcebb2426e4ba2e9b {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.RNA-Seq.genomic.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.genomic.gdc_realn.bam 8587413235 BAM genomic harmonized CPTAC3 2e3fcf51-0d25-4e50-86fb-9c21d965e572 1c7a5b296ec84d7ac03bcfb8cc707d1b {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.RNA-Seq.S13_L004_R1.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4366895728 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 12929715-f6fc-463c-9c52-14611d4204e2 2d5ee10fe9e9719d39fdb5fc15d4eb57 {"aliquot_tag": "ALQ_723cc2f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.RNA-Seq.S13_L004_R2.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4871950739 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 bebb0111-48c4-448d-ac99-487b825baf58 cd707574ef86c518f50c2bc74d28b68c {"aliquot_tag": "ALQ_723cc2f", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.RNA-Seq.S4_L007_R1.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3631172744 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 fa21ff7c-cb3a-4bcd-ac39-b9a69f09f865 88e272b58da7d8e0bb146da619a0cdd2 {"aliquot_tag": "ALQ_25bc0dae", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.RNA-Seq.S4_L007_R2.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 4023468920 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 d6193ba0-a0b7-482a-aa76-ab2a9656107b d0c228b6a5ec820825356c19a2c22f4e {"aliquot_tag": "ALQ_25bc0dae", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.RNA-Seq.transcriptome.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.transcriptome.gdc_realn.bam 12344189659 BAM transcriptome harmonized CPTAC3 be34e592-f8fb-4b3b-bc5e-e31ee6d602f2 009f7bf42b47ee74b89380b0cb1a634c {"aliquot_tag": "ALQ_723cc2f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.RNA-Seq.transcriptome.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.transcriptome.gdc_realn.bam 9837903706 BAM transcriptome harmonized CPTAC3 eeec4588-c87d-4821-b2ea-08cc94342c78 6f02edc45ad1dfcfbf4d095b71ebeffe {"aliquot_tag": "ALQ_25bc0dae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.WGS.A C3N-02149 LUAD WGS tissue_normal CPT0118650009 CPT0118650009.WholeGenome.RP-1303.bam 63484893208 BAM submitted_aligned CPTAC3 6bf5cb45-a82b-4c7f-9bd6-3b08ccf8798e 41761a34cb82ae82b53bcba1f06620a9 {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.WGS.A.hg38 C3N-02149 LUAD WGS tissue_normal CPT0118650009 85bee5d7-ca2c-4eab-b4c7-672afbd8ef7e_wgs_gdc_realn.bam 92537021356 BAM harmonized CPTAC3 bf2528de-94be-4f54-ae91-90c01ed456db ae9ac8a0bde72bb4a14599f9395209e7 {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.WGS.N C3N-02149 LUAD WGS blood_normal CPT0119870002 CPT0119870002.WholeGenome.RP-1303.bam 71936192505 BAM submitted_aligned CPTAC3 d38a72d2-ffc3-4d00-96ae-7770434ae78d 88c15521cf2df117cffd9145fa419f69 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02149.WGS.N.hg38 C3N-02149 LUAD WGS blood_normal CPT0119870002 a53c962e-f431-4d44-88cd-4e8e3266df3f_wgs_gdc_realn.bam 106554081386 BAM harmonized CPTAC3 126eff70-4fdd-4cc0-87bd-c027c1aa6efa 263131442246d77f81a90bb5b70cc371 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02149.WGS.T C3N-02149 LUAD WGS tumor CPT0118620006 CPT0118620006.WholeGenome.RP-1303.bam 68202627982 BAM submitted_aligned CPTAC3 bbe24f4e-04a9-43b7-ae6f-b126f1a7f438 5265d535a6f890090bcfada857f9d03f {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.WGS.T.hg38 C3N-02149 LUAD WGS tumor CPT0118620006 b9125a98-59f8-4952-b25f-ffeba3e29a57_wgs_gdc_realn.bam 98665304512 BAM harmonized CPTAC3 47259525-439a-451c-9928-edbfdcb64b67 37e87afafbc1d527fe5c724452b1fed0 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.WXS.A C3N-02149 LUAD WXS tissue_normal CPT0118650009 CPT0118650009.WholeExome.RP-1303.bam 35251044048 BAM submitted_aligned CPTAC3 e8489660-a732-47aa-a17e-cc5e6f3b312f 20210482759c0f8fd74c120842cc585d {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.WXS.A.hg38 C3N-02149 LUAD WXS tissue_normal CPT0118650009 85bee5d7-ca2c-4eab-b4c7-672afbd8ef7e_wxs_gdc_realn.bam 47384250047 BAM harmonized CPTAC3 b464876e-29f1-4830-b7d8-e9070f976551 11fab6fcf22c4b15d3d59bf2f4dc25bb {"aliquot_tag": "ALQ_979cd1be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02149.WXS.N C3N-02149 LUAD WXS blood_normal CPT0119870002 CPT0119870002.WholeExome.RP-1303.bam 45265816231 BAM submitted_aligned CPTAC3 40c54124-c3df-46b5-80c1-fe2094acc311 a6cf4f59af01881ebf06dd95c98193e5 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02149.WXS.N.hg38 C3N-02149 LUAD WXS blood_normal CPT0119870002 a53c962e-f431-4d44-88cd-4e8e3266df3f_wxs_gdc_realn.bam 60509033291 BAM harmonized CPTAC3 5f9fee87-fcca-4efd-8730-ff6038ce26aa d544a292e802425b55fdee4f5ecca916 {"aliquot_tag": "ALQ_e6f33192", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02149.WXS.T C3N-02149 LUAD WXS tumor CPT0118620006 CPT0118620006.WholeExome.RP-1303.bam 36414207865 BAM submitted_aligned CPTAC3 24ce04e7-4214-4ea4-a895-3306afa22c1f fdd0f784012839dc62797fdd489a5420 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02149.WXS.T.hg38 C3N-02149 LUAD WXS tumor CPT0118620006 b9125a98-59f8-4952-b25f-ffeba3e29a57_wxs_gdc_realn.bam 48677763794 BAM harmonized CPTAC3 b7a376a3-c0b0-4f66-bd65-6c6b2a369cfc 6a4815809c9169e7b75c27b32369b5f3 {"aliquot_tag": "ALQ_b503103f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.MethArray.Green.A C3N-02150 LUAD Methylation_Array tissue_normal CPT0118710009 203027390118_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8c2925c6-e1d0-40d2-8833-92c593885e26 d9293cf7a21f4a46ba81cd9ac5f61f89 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.MethArray.Green.T C3N-02150 LUAD Methylation_Array tumor CPT0118700006 202234360025_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 fa2627e5-f063-4fe2-9cc2-1c4a890cb3d0 d9c9ad26cc594aee31b68b483964c782 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.MethArray.Red.A C3N-02150 LUAD Methylation_Array tissue_normal CPT0118710009 203027390118_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 f62d82b4-8856-42fd-a3ba-cd3d4c407724 0880e2d384b44782d3281c9bf5fa2a07 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.MethArray.Red.T C3N-02150 LUAD Methylation_Array tumor CPT0118700006 202234360025_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 0c61c31b-b267-42c4-81f0-d4510f065465 9cbfd3ceb29fff97cc9c77038d81ae1b {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.miRNA-Seq.A.hg38 C3N-02150 LUAD miRNA-Seq tissue_normal CPT0118710006 0d27d530-2d19-4927-baf1-209c14caeaea_mirnaseq_gdc_realn.bam 230714513 BAM harmonized CPTAC3 a390c88f-65ec-497e-82cd-44d819f12c2a a4bdcea5ef33cfdd7a05e3507ce5baf5 {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.miRNA-Seq.S19_L004_R1.T C3N-02150 LUAD miRNA-Seq tumor CPT0118700009 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L004_R1_001.unaln.bam 252409691 BAM S19_L004_R1 submitted_unaligned CPTAC3 4c39c0e7-4a5a-4b23-9d09-377b77bcbbc3 c8f116479c59d2755d7568cb0ee65b1c {"aliquot_tag": "ALQ_94208d6b", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.miRNA-Seq.S44_L006_R1.A C3N-02150 LUAD miRNA-Seq tissue_normal CPT0118710006 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L006_R1_001.unaln.bam 208658454 BAM S44_L006_R1 submitted_unaligned CPTAC3 48189d12-26b8-4c2a-a2c8-ab33842e0373 6538f43ffc7a5a16299588adb4863b7c {"aliquot_tag": "ALQ_39ffb94a", "sample": "S44", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.miRNA-Seq.T.hg38 C3N-02150 LUAD miRNA-Seq tumor CPT0118700009 f873c66e-5aaf-4ff5-862a-62b09ce276e6_mirnaseq_gdc_realn.bam 270204599 BAM harmonized CPTAC3 7051a252-d974-406c-af88-a6cac63fc873 b69e38258b8dc1d4ba79e0801eb56a7e {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.RNA-Seq.chimeric.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.chimeric.gdc_realn.bam 66174492 BAM chimeric harmonized CPTAC3 58a9f5ed-7c1f-4237-8755-a6030a7e4f72 8ac8c496124fa72aa332c0a5fb62c43d {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.RNA-Seq.chimeric.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.chimeric.gdc_realn.bam 126678513 BAM chimeric harmonized CPTAC3 aaa5969e-f85d-44b7-b9d9-68c3c3ec6eb7 f54d0925122b4d413c43208f06a41a16 {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.RNA-Seq.genomic.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.genomic.gdc_realn.bam 7877200058 BAM genomic harmonized CPTAC3 f6b9d8d0-2da9-43c4-9536-d46a3a7ccd53 2aabf91638c551b36f984e66e9dee43f {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.RNA-Seq.genomic.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.genomic.gdc_realn.bam 8469154808 BAM genomic harmonized CPTAC3 2a646780-a2f1-49c6-9210-8fb53927707b d808119858ee8ac1fee8157c3121aeb8 {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.RNA-Seq.S22_L006_R1.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3841420216 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 39b210fe-d49c-454e-acc2-5136184d18a4 e98c3f598640cd1cc980ff8bfe03e276 {"aliquot_tag": "ALQ_94208d6b", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.RNA-Seq.S22_L006_R2.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4336286051 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 7e4d06e2-8d42-488d-aa53-a9801189552f 81b179c127d8f526893eb9a56a7f6e29 {"aliquot_tag": "ALQ_94208d6b", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.RNA-Seq.S34_L006_R1.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R1_001.fastq.gz 4211755416 FASTQ S34_L006_R1 submitted_unaligned CPTAC3 022035d9-42be-4313-b98b-f2645f051afb b659c5bdd51cb5ac237c2c9f61b92acd {"aliquot_tag": "ALQ_39ffb94a", "sample": "S34", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.RNA-Seq.S34_L006_R2.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R2_001.fastq.gz 4576581981 FASTQ S34_L006_R2 submitted_unaligned CPTAC3 150222e9-64f1-4230-b072-c8d7182a6660 b912c0a7fc7d809b2d375ab934bbc7d5 {"aliquot_tag": "ALQ_39ffb94a", "sample": "S34", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.RNA-Seq.transcriptome.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.transcriptome.gdc_realn.bam 10808719427 BAM transcriptome harmonized CPTAC3 a2806193-43f5-4f3a-af4e-4c1e0671a3b4 58f0187a075742ece35f6852d50d71cd {"aliquot_tag": "ALQ_39ffb94a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.RNA-Seq.transcriptome.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.transcriptome.gdc_realn.bam 11573924570 BAM transcriptome harmonized CPTAC3 d2c73c31-5bfd-4de2-aefc-6cc4dd22759d f98b20d6b60212889fcf3ef33c9b4e9d {"aliquot_tag": "ALQ_94208d6b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.WGS.A C3N-02150 LUAD WGS tissue_normal CPT0118710009 CPT0118710009.WholeGenome.RP-1303.bam 72269981785 BAM submitted_aligned CPTAC3 2b55fcb0-32a5-48e0-9063-68eb1c8821c5 571734d29766f8b1e960b50bbbd6f38e {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.WGS.A.hg38 C3N-02150 LUAD WGS tissue_normal CPT0118710009 90f70141-a933-4a7f-8dcf-d201bbb20119_wgs_gdc_realn.bam 104660057999 BAM harmonized CPTAC3 8b9e546e-c39b-40f7-820a-02a5febe8fec 11796c22a2cc678d566b863202823515 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.WGS.N C3N-02150 LUAD WGS blood_normal CPT0119930002 CPT0119930002.WholeGenome.RP-1303.bam 57139921267 BAM submitted_aligned CPTAC3 66664976-00c8-4bbe-841e-f939a0b24902 7bb77f26beb6dcc62f1c787ed3e1e3e5 {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02150.WGS.N.hg38 C3N-02150 LUAD WGS blood_normal CPT0119930002 2f8ab529-beb9-4c49-86cf-a5440ec3fe87_wgs_gdc_realn.bam 83316327566 BAM harmonized CPTAC3 2ed5e957-600f-4238-a408-b23896cd2131 d5bb10c3ee120ad96789d0567b0b08c6 {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02150.WGS.T C3N-02150 LUAD WGS tumor CPT0118700006 CPT0118700006.WholeGenome.RP-1303.bam 72836286792 BAM submitted_aligned CPTAC3 d0c87e61-786c-4b5b-a272-70e143c97ab2 675887dcc62aca5be35d43b979388465 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.WGS.T.hg38 C3N-02150 LUAD WGS tumor CPT0118700006 7ff33498-d50f-417e-b3a2-83bf77515b46_wgs_gdc_realn.bam 105672788597 BAM harmonized CPTAC3 1ed668c2-5a8f-4223-9626-72a7a6dd0149 18a0b8ff68d3b2ed08eb6592f1758716 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.WXS.A C3N-02150 LUAD WXS tissue_normal CPT0118710009 CPT0118710009.WholeExome.RP-1303.bam 30441846058 BAM submitted_aligned CPTAC3 ef44f4b7-8ebd-47c9-b163-cb1ecc76002a b1f7c5d0af93df0161e782931e248141 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.WXS.A.hg38 C3N-02150 LUAD WXS tissue_normal CPT0118710009 90f70141-a933-4a7f-8dcf-d201bbb20119_wxs_gdc_realn.bam 40790488154 BAM harmonized CPTAC3 7b0f8589-d63a-4316-a583-b8a9bc88fec3 62d835c229878cecc375d2ee7d3e0028 {"aliquot_tag": "ALQ_a940a4db", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02150.WXS.N C3N-02150 LUAD WXS blood_normal CPT0119930002 CPT0119930002.WholeExome.RP-1303.bam 33338238409 BAM submitted_aligned CPTAC3 2b9d2365-3e90-425b-bad3-e8ef827ed08e 71e72003436273179d2545a3a6c010ce {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02150.WXS.N.hg38 C3N-02150 LUAD WXS blood_normal CPT0119930002 2f8ab529-beb9-4c49-86cf-a5440ec3fe87_wxs_gdc_realn.bam 44457180754 BAM harmonized CPTAC3 13729c5e-e258-4779-9ff9-e09ceeba5c23 9e873a9626315b5996fe745524428fd7 {"aliquot_tag": "ALQ_d82f44f7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02150.WXS.T C3N-02150 LUAD WXS tumor CPT0118700006 CPT0118700006.WholeExome.RP-1303.bam 38148322439 BAM submitted_aligned CPTAC3 93a511f0-76f1-4e27-b68c-2161be7c6585 2ac626aacaffabbaa6efc221bf440010 {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02150.WXS.T.hg38 C3N-02150 LUAD WXS tumor CPT0118700006 7ff33498-d50f-417e-b3a2-83bf77515b46_wxs_gdc_realn.bam 52422129939 BAM harmonized CPTAC3 6ad764a5-6afe-4ff0-972b-8725cc8b4006 026e943468c92486eae7d60a24a1498e {"aliquot_tag": "ALQ_49f90fa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.MethArray.Green.A C3N-02152 LUAD Methylation_Array tissue_normal CPT0213790007 203561450100_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6f0bb352-d01e-43cb-b4c6-0f6b06d4ca71 4a7f9eefb0dac2740c34639f39327c07 {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.MethArray.Green.T C3N-02152 LUAD Methylation_Array tumor CPT0213780007 203561450018_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b4a441fa-5a41-4188-93d4-bd145724aa56 3318c685ca32a6e86aed7c9b465b2120 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.MethArray.Red.A C3N-02152 LUAD Methylation_Array tissue_normal CPT0213790007 203561450100_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 ea61dd3c-0a92-47b3-8c80-a23420355232 9e12932f51a21b36ff148d8c2f2a115c {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.MethArray.Red.T C3N-02152 LUAD Methylation_Array tumor CPT0213780007 203561450018_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 a9a7f844-e090-4544-b4fc-581cdc7672dc b35be24ccc5b23fb409f7e9b9967df66 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.miRNA-Seq.A.hg38 C3N-02152 LUAD miRNA-Seq tissue_normal CPT0213790010 647e3ef5-fe44-4936-bf8e-3363f257299a_mirnaseq_gdc_realn.bam 245052321 BAM harmonized CPTAC3 47506536-55c4-4a6a-8b72-cf2138b54c67 b51a700c055736522590a48e1d836dc0 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.miRNA-Seq.S140_L008_R1.T C3N-02152 LUAD miRNA-Seq tumor CPT0213780010 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTCAA_S140_L008_R1_001.unaln.bam 418453860 BAM S140_L008_R1 submitted_unaligned CPTAC3 61567e60-d4eb-4604-8952-0a508e5aa469 867276273d8c47c4d617cb7a482290e1 {"aliquot_tag": "ALQ_ff1d2770", "sample": "S140", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.miRNA-Seq.S37_L005_R1.A C3N-02152 LUAD miRNA-Seq tissue_normal CPT0213790010 190712_UNC32-K00270_0192_BH7HL3BBXY_AGTTCC_S37_L005_R1_001.unaln.bam 214854293 BAM S37_L005_R1 submitted_unaligned CPTAC3 fd5aae4b-3d55-4a23-b179-2837ca343377 0a1fc175af88de99249ab98438cca8b9 {"aliquot_tag": "ALQ_c27d0ec0", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.miRNA-Seq.T.hg38 C3N-02152 LUAD miRNA-Seq tumor CPT0213780010 cb904d55-f0c1-44c5-beef-f8ce5ce41b47_mirnaseq_gdc_realn.bam 451279215 BAM harmonized CPTAC3 ddd10449-97da-4927-80f9-e4397558f3a3 fdf6dc0c9d3b1b206516bf23168b32da {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.RNA-Seq.chimeric.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.chimeric.gdc_realn.bam 26824479 BAM chimeric harmonized CPTAC3 23979adb-44b2-43b5-9eba-c377f2c70991 c9a6bb4080a07d51e772b49e8d2c7044 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.RNA-Seq.chimeric.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.chimeric.gdc_realn.bam 29088869 BAM chimeric harmonized CPTAC3 3dcacbff-0d89-4be9-96f0-92a6ed7ca878 54e6412268f8806070d8a446544c923e {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.RNA-Seq.genomic.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.genomic.gdc_realn.bam 6722834500 BAM genomic harmonized CPTAC3 67f8ab22-7dc9-49e6-8a80-856586d69a0e bd41fcd5db759bd97d3bc46802bede63 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.RNA-Seq.genomic.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.genomic.gdc_realn.bam 7965194908 BAM genomic harmonized CPTAC3 cc1c9459-aaba-4625-9dd8-2797b1d56c76 81807dcbfd5d4b8ada269166eeaa5a3a {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.RNA-Seq.S21_L006_R1.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R1_001.fastq.gz 3215151593 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 fd006dcd-2dbf-477a-9d4a-7a838a7c0f87 fcfc363c457796f58ae680e16d0523ad {"aliquot_tag": "ALQ_c27d0ec0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.RNA-Seq.S21_L006_R2.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R2_001.fastq.gz 3423211453 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 2c8d43f8-39c1-4d42-861e-733d44c45f55 d39ed16c6de6fe982e79b6522d4bd621 {"aliquot_tag": "ALQ_c27d0ec0", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.RNA-Seq.S22_L006_R1.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3780577816 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 ff6460e8-9b60-464d-812d-fd7a62d1f4f7 91984d2d750fea307b434ec5bd5e8631 {"aliquot_tag": "ALQ_ff1d2770", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.RNA-Seq.S22_L006_R2.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 4057251399 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 ad7d2edd-5cdc-46f9-a31c-9ca68f2eda09 968795a62634a2da0ca4523ec2e41d70 {"aliquot_tag": "ALQ_ff1d2770", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.RNA-Seq.transcriptome.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.transcriptome.gdc_realn.bam 7643707635 BAM transcriptome harmonized CPTAC3 f3a57444-fabb-472e-a77e-78161a700219 09a8c2d6df46d9beaef6637edb5b8664 {"aliquot_tag": "ALQ_c27d0ec0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.RNA-Seq.transcriptome.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.transcriptome.gdc_realn.bam 9853448824 BAM transcriptome harmonized CPTAC3 0f44cc1a-6892-4b04-bfd0-146aa064f3af 80f7098752f4471e442856c1a313546d {"aliquot_tag": "ALQ_ff1d2770", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.WGS.N C3N-02152 LUAD WGS blood_normal CPT0213870002 CPT0213870002.WholeGenome.RP-1303.bam 55692279926 BAM submitted_aligned CPTAC3 e809edc2-604b-486c-b646-6a28b027b3f9 09e9f21ddc96fbb10fa1b4298ef81043 {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02152.WGS.N.hg38 C3N-02152 LUAD WGS blood_normal CPT0213870002 3299cdaa-f8e7-42b1-b141-c111fed56e3c_wgs_gdc_realn.bam 81505154773 BAM harmonized CPTAC3 85cb595c-9877-4cbd-ae67-27aadd3b195d bcc41cbcc9fff53626ca03cde95dbf4e {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02152.WGS.T C3N-02152 LUAD WGS tumor CPT0213780007 CPT0213780007.WholeGenome.RP-1303.bam 60830350509 BAM submitted_aligned CPTAC3 19fd2713-33c9-4f22-ad51-7109448e2b86 054ccfd664a8f7dd0e98052a1e4dc7c8 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.WGS.T.hg38 C3N-02152 LUAD WGS tumor CPT0213780007 94b8ee40-d718-48af-97d6-5b6528f4115e_wgs_gdc_realn.bam 89274500188 BAM harmonized CPTAC3 c9838e83-e208-4885-b9cd-658d5c8e817f 5c01ced9f2091a5423e70d43711de735 {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.WXS.A C3N-02152 LUAD WXS tissue_normal CPT0213790007 CPT0213790007.WholeExome.RP-1303.bam 24562004122 BAM submitted_aligned CPTAC3 6b49e6ed-e132-4860-966f-7e35aecc89fa fc727268643ce0cc43b72d6039c0be4d {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.WXS.A.hg38 C3N-02152 LUAD WXS tissue_normal CPT0213790007 02ac19e0-ae8a-4b7f-af0d-0ff5f078ec0c_wxs_gdc_realn.bam 34518714502 BAM harmonized CPTAC3 79996815-6ab2-40c4-a97f-94d9e2c309f4 29e8f9c3198a3423e8a74674bad1264a {"aliquot_tag": "ALQ_4502aa22", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02152.WXS.N C3N-02152 LUAD WXS blood_normal CPT0213870002 CPT0213870002.WholeExome.RP-1303.bam 24149373751 BAM submitted_aligned CPTAC3 d5f5a82d-c753-4971-af96-e7add499e1f7 882518bbf7ff5b01b93db6c3ddb9274d {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02152.WXS.N.hg38 C3N-02152 LUAD WXS blood_normal CPT0213870002 3299cdaa-f8e7-42b1-b141-c111fed56e3c_wxs_gdc_realn.bam 33407520388 BAM harmonized CPTAC3 27bb1cf0-397e-405c-902a-f93d89869172 c7f46831002c3ab2477ac0d16941c96b {"aliquot_tag": "ALQ_7b0e5219", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02152.WXS.T C3N-02152 LUAD WXS tumor CPT0213780007 CPT0213780007.WholeExome.RP-1303.bam 23322336328 BAM submitted_aligned CPTAC3 6ed8f78e-1cfd-46af-850a-31a61c07ffc1 ae55387a16368a1d0cedafb618b166fd {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02152.WXS.T.hg38 C3N-02152 LUAD WXS tumor CPT0213780007 94b8ee40-d718-48af-97d6-5b6528f4115e_wxs_gdc_realn.bam 33110331854 BAM harmonized CPTAC3 48591dca-99a8-4a4b-9df6-9ea947f5aa20 28ae9f8e1f4a2c56340dcd9031b9e33e {"aliquot_tag": "ALQ_78628392", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.MethArray.Green.A C3N-02153 LUAD Methylation_Array tissue_normal CPT0118770009 203027390073_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e18f9ee4-a078-4666-84bb-04828011b87e 31a5cf8281c762c64a09391f5859cce5 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.MethArray.Green.T C3N-02153 LUAD Methylation_Array tumor CPT0118740006 202234380102_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a11ea60b-3627-48a5-bbac-b8d5753fcd6e 1869fb8d1e0e9bafe3d940e93b5dd49b {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.MethArray.Red.A C3N-02153 LUAD Methylation_Array tissue_normal CPT0118770009 203027390073_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 456cc991-3fc7-417c-a65d-19e15db4a463 1e9ff45829208f6b1f895f58b3a2abb8 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.MethArray.Red.T C3N-02153 LUAD Methylation_Array tumor CPT0118740006 202234380102_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 9ab6afc5-4a42-42cf-9693-c84580fb3f0d d39bf369c246a6d2f1ff96650ed50127 {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.miRNA-Seq.A.hg38 C3N-02153 LUAD miRNA-Seq tissue_normal CPT0118770006 131256f9-325e-47ab-ae58-8f8a0bdc711a_mirnaseq_gdc_realn.bam 219172207 BAM harmonized CPTAC3 5eaf7e92-9d61-45a1-8ae9-1c9174b73c15 0488af8cbcb304ef831e4e31b7295207 {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.miRNA-Seq.S20_L004_R1.T C3N-02153 LUAD miRNA-Seq tumor CPT0118740009 181119_UNC31-K00269_0165_AH27WCBBXY_TATAAT_S20_L004_R1_001.unaln.bam 269801150 BAM S20_L004_R1 submitted_unaligned CPTAC3 20e8ffd3-2783-4ef6-ae12-dab3c6b405de 7f6899b2e37c94695ef8f0b6031c3748 {"aliquot_tag": "ALQ_61a02bab", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.miRNA-Seq.S45_L006_R1.A C3N-02153 LUAD miRNA-Seq tissue_normal CPT0118770006 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L006_R1_001.unaln.bam 196653878 BAM S45_L006_R1 submitted_unaligned CPTAC3 1ae8e11e-1c7d-46b9-af1b-02075cb497d2 78ce0e628ac77e2009ba2524d17bdb16 {"aliquot_tag": "ALQ_b6bf4cea", "sample": "S45", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.miRNA-Seq.T.hg38 C3N-02153 LUAD miRNA-Seq tumor CPT0118740009 6cf7025b-7cfb-47c5-80d5-be68b498be64_mirnaseq_gdc_realn.bam 288098789 BAM harmonized CPTAC3 a4205c1f-b8b3-43f1-af22-6f2efcbd3275 026dc4069851d83b5143314026dbd19b {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.RNA-Seq.chimeric.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.chimeric.gdc_realn.bam 119161499 BAM chimeric harmonized CPTAC3 4a4e7102-e8f0-40fd-af3d-c8816e352f14 e3ebcb502a7a9426f58145e4a66b0b49 {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.RNA-Seq.chimeric.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.chimeric.gdc_realn.bam 74133855 BAM chimeric harmonized CPTAC3 388e3ef1-4459-40b5-b17c-44eff4d909cb cdf79695f6bf06e1fbd3f72ed786cbe4 {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.RNA-Seq.genomic.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.genomic.gdc_realn.bam 7445027021 BAM genomic harmonized CPTAC3 e99a5ba8-c303-48be-a0ea-e05eaf57e12f 6af07b54c55c87dc1b4bc784069879dc {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.RNA-Seq.genomic.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.genomic.gdc_realn.bam 7812122595 BAM genomic harmonized CPTAC3 51fe509b-51e7-476d-8b08-9b05622f98fb 7313c3d6495d5a97fed4b270129aa22c {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.RNA-Seq.S12_L004_R1.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R1_001.fastq.gz 3609502695 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 e5fe04bc-dd4e-496a-a8ad-11210a10aeaf 3a841f4b525eefbe134c7d5b20dff7fd {"aliquot_tag": "ALQ_b6bf4cea", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.RNA-Seq.S12_L004_R2.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R2_001.fastq.gz 4014951162 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 7fe50e5a-eec1-4fae-825f-8b1797741125 e3ccc3ff751a4a24dd4982dca6af6a58 {"aliquot_tag": "ALQ_b6bf4cea", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.RNA-Seq.S21_L006_R1.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 3700498060 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 c24bfb5f-7d82-4aad-a8ef-3bc0fc68f1f7 ff976d4ee9340cb6f79a1e1c57b39377 {"aliquot_tag": "ALQ_61a02bab", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.RNA-Seq.S21_L006_R2.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 4149659004 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 eae1810b-311b-4c8a-a687-62a903e0af6f 2e2cffe85608c9da66695fd3e5f3f264 {"aliquot_tag": "ALQ_61a02bab", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.RNA-Seq.transcriptome.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.transcriptome.gdc_realn.bam 9597472711 BAM transcriptome harmonized CPTAC3 26ec9f0c-ece1-46d5-b4ed-cac9322a6e51 1ba57fa009dcd530bbc4f3c7d458df99 {"aliquot_tag": "ALQ_b6bf4cea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.RNA-Seq.transcriptome.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.transcriptome.gdc_realn.bam 10933785636 BAM transcriptome harmonized CPTAC3 4b75e058-be63-42a4-bc0a-975ca251cf25 016f56c72dc97353561c9a378a3878ac {"aliquot_tag": "ALQ_61a02bab", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.WGS.A C3N-02153 LUAD WGS tissue_normal CPT0118770009 CPT0118770009.WholeGenome.RP-1303.bam 60943193860 BAM submitted_aligned CPTAC3 d8335af2-daf7-4e06-92f7-c2c36356237a 2346d661f7ae42540e4b44b8b2fa84e9 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.WGS.A.hg38 C3N-02153 LUAD WGS tissue_normal CPT0118770009 6651d0de-376c-4aee-a9bf-c3e4f3133498_wgs_gdc_realn.bam 89378010900 BAM harmonized CPTAC3 a06dfda2-7f30-4ab4-95b1-21adec453ee1 e4534fa6efabb0581bdbcdabf8dded5d {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.WGS.N C3N-02153 LUAD WGS blood_normal CPT0119990002 CPT0119990002.WholeGenome.RP-1303.bam 57817291678 BAM submitted_aligned CPTAC3 bd7f9bb8-e34f-49ba-a9a7-b3078f99e477 19ac1f2980795d719a006c00f593ecc1 {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02153.WGS.N.hg38 C3N-02153 LUAD WGS blood_normal CPT0119990002 23c2a3ed-1037-4fc5-b178-d815bb0d2c8c_wgs_gdc_realn.bam 87313774513 BAM harmonized CPTAC3 4d15457a-3ca3-46fe-a337-0684fd490005 ffa9df79f33aabb7052d0f7eb5638bec {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02153.WGS.T C3N-02153 LUAD WGS tumor CPT0118740006 CPT0118740006.WholeGenome.RP-1303.bam 56771231623 BAM submitted_aligned CPTAC3 0c06b6f2-1dfd-4349-80ed-3778bc633ba0 3f917f572a475ba477353d5d5976ed1a {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.WGS.T.hg38 C3N-02153 LUAD WGS tumor CPT0118740006 209d6415-2a61-4428-abba-6774dbaabd97_wgs_gdc_realn.bam 84094238178 BAM harmonized CPTAC3 e08d97c0-a0a4-4623-b81b-9259fc7d5d39 0ab0e708a988d4613ff3b676167aaa04 {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.WXS.A C3N-02153 LUAD WXS tissue_normal CPT0118770009 CPT0118770009.WholeExome.RP-1303.bam 29138270527 BAM submitted_aligned CPTAC3 55ec8caa-9362-4363-bf75-62eff674f76e b3bb471e8e9d65e12287cd92b09fed81 {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.WXS.A.hg38 C3N-02153 LUAD WXS tissue_normal CPT0118770009 6651d0de-376c-4aee-a9bf-c3e4f3133498_wxs_gdc_realn.bam 39077990533 BAM harmonized CPTAC3 2c4f98cb-4382-4bd0-ab34-5b93f680d54e 9f828419d7a7401e29ceb3abe91f925c {"aliquot_tag": "ALQ_2600517b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02153.WXS.N C3N-02153 LUAD WXS blood_normal CPT0119990002 CPT0119990002.WholeExome.RP-1303.bam 40646522621 BAM submitted_aligned CPTAC3 34d5109a-e541-486b-be06-8e27d596ba19 26914221a2f2149eeacf0ab72b0430f5 {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02153.WXS.N.hg38 C3N-02153 LUAD WXS blood_normal CPT0119990002 23c2a3ed-1037-4fc5-b178-d815bb0d2c8c_wxs_gdc_realn.bam 54359204056 BAM harmonized CPTAC3 608118ab-c03d-4616-bed0-c0f72cea79e7 3b0e130172058a6a519083d4a7b4370f {"aliquot_tag": "ALQ_929f5c56", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02153.WXS.T C3N-02153 LUAD WXS tumor CPT0118740006 CPT0118740006.WholeExome.RP-1303.bam 45682693240 BAM submitted_aligned CPTAC3 4ba718a8-d0d0-424c-9f8e-ec3730a05dae da747a82ace140c22488af83a5105bfa {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02153.WXS.T.hg38 C3N-02153 LUAD WXS tumor CPT0118740006 209d6415-2a61-4428-abba-6774dbaabd97_wxs_gdc_realn.bam 62552051041 BAM harmonized CPTAC3 f8cd3f86-e4aa-45a1-9958-d1f84ed28795 936cd1e7c6dd1921eda58dfdf22861c2 {"aliquot_tag": "ALQ_f11f363a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.MethArray.Green.A C3N-02155 LUAD Methylation_Array tissue_normal CPT0118830009 203027390034_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b854d5d0-1e11-41bd-ab7a-521deaf8a7b7 b942fafcfa06dc811a3b67196635653c {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.MethArray.Green.T C3N-02155 LUAD Methylation_Array tumor CPT0118810006 202234370079_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bb196fe4-e9c4-4f6d-a1fe-b543e631c88e 1fec46a9f10b7c7665025063bbb3f01a {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.MethArray.Red.A C3N-02155 LUAD Methylation_Array tissue_normal CPT0118830009 203027390034_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 67c73672-997e-46f4-89cf-7f6dfed9f5b1 06d6f5969646459264a2cbb7f81ce911 {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.MethArray.Red.T C3N-02155 LUAD Methylation_Array tumor CPT0118810006 202234370079_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 f766dae3-f90e-4e18-95f3-09d770ca9547 040b52de1094ab86edbef503d7dbffe9 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.miRNA-Seq.A.hg38 C3N-02155 LUAD miRNA-Seq tissue_normal CPT0118830006 aefe3f43-d7a8-4424-8141-8cf9982204eb_mirnaseq_gdc_realn.bam 234141371 BAM harmonized CPTAC3 6e979eb0-f3c5-4970-9f62-14611878cd18 240506963f18a386c363ed636d1ecb2a {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.miRNA-Seq.S21_L004_R1.T C3N-02155 LUAD miRNA-Seq tumor CPT0118810009 181119_UNC31-K00269_0165_AH27WCBBXY_TCATTC_S21_L004_R1_001.unaln.bam 186832700 BAM S21_L004_R1 submitted_unaligned CPTAC3 797313d3-2c42-4e16-9935-d96eee572fe6 79c3c8d43f87bc611706e2a3ce5f60aa {"aliquot_tag": "ALQ_5816160e", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.miRNA-Seq.S46_L006_R1.A C3N-02155 LUAD miRNA-Seq tissue_normal CPT0118830006 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L006_R1_001.unaln.bam 212461231 BAM S46_L006_R1 submitted_unaligned CPTAC3 0ac64759-7aa6-45ab-b97c-90d39a6c4df6 6c7fcf913a814716127d853473d0b65a {"aliquot_tag": "ALQ_b26958ff", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.miRNA-Seq.T.hg38 C3N-02155 LUAD miRNA-Seq tumor CPT0118810009 67396db5-4715-4c08-8a9b-bf861f8f8c33_mirnaseq_gdc_realn.bam 201458794 BAM harmonized CPTAC3 2f103a3a-298d-49ce-a5d3-2838bf3b48c6 c49db62e2c33f2d4e0969a475364161e {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.RNA-Seq.chimeric.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.chimeric.gdc_realn.bam 125959932 BAM chimeric harmonized CPTAC3 e25f3f1d-52ba-4b55-81ea-1bfba42a405a dc7f586e834d04a090ca5f94520ff910 {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.RNA-Seq.chimeric.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.chimeric.gdc_realn.bam 98515029 BAM chimeric harmonized CPTAC3 59078078-03d5-487c-a641-7723441e3937 1af1f6fed6fe94a3658a971b739571f8 {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.RNA-Seq.genomic.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.genomic.gdc_realn.bam 8235149281 BAM genomic harmonized CPTAC3 aa2a1638-5dc4-48da-81d0-79071b376a1f 7a5da4134a4bd243d0c299e81816b8fa {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.RNA-Seq.genomic.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.genomic.gdc_realn.bam 9695716565 BAM genomic harmonized CPTAC3 b9e55002-5275-4186-abcd-8acb7a63c6dd c81276f9e3293b89806eb912b730e24c {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.RNA-Seq.S11_L004_R1.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R1_001.fastq.gz 3886925514 FASTQ S11_L004_R1 submitted_unaligned CPTAC3 c03632dd-75be-4d6a-8943-deeb263ec97a b6085bae71f21fec768db5755be8f354 {"aliquot_tag": "ALQ_b26958ff", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.RNA-Seq.S11_L004_R2.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R2_001.fastq.gz 4271302969 FASTQ S11_L004_R2 submitted_unaligned CPTAC3 2e7baf63-9630-4c2b-852c-c93fe3520e4d 03014b582fdfb8633d442a63648824d9 {"aliquot_tag": "ALQ_b26958ff", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.RNA-Seq.S20_L006_R1.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R1_001.fastq.gz 4483392925 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 1089cd84-cf1f-4909-9415-def442e739e4 516751c28b729c8ab7ef1732238eae25 {"aliquot_tag": "ALQ_5816160e", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.RNA-Seq.S20_L006_R2.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R2_001.fastq.gz 4979758655 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 c4f6e3b6-0d28-4f97-9717-597deda328cc 71574ab52e47032173a53d1da198184c {"aliquot_tag": "ALQ_5816160e", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.RNA-Seq.transcriptome.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.transcriptome.gdc_realn.bam 10182580217 BAM transcriptome harmonized CPTAC3 65810de4-d8a1-4623-9371-df90830509e9 d858596f89c2571c1f2c836b62372462 {"aliquot_tag": "ALQ_b26958ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.RNA-Seq.transcriptome.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.transcriptome.gdc_realn.bam 11616962768 BAM transcriptome harmonized CPTAC3 03e790f8-84ea-4208-8f47-0d3671c8d0ce 394b69221e9710825b7a53931f9d63a3 {"aliquot_tag": "ALQ_5816160e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.WGS.A C3N-02155 LUAD WGS tissue_normal CPT0118830009 CPT0118830009.WholeGenome.RP-1303.bam 52634776484 BAM submitted_aligned CPTAC3 2593d748-4e9c-4389-a4b3-25f3ed6e90ab d23111cb13502722df9422538621abc3 {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.WGS.A.hg38 C3N-02155 LUAD WGS tissue_normal CPT0118830009 ed19b4b1-22a5-412b-bb6e-b00d0f084006_wgs_gdc_realn.bam 76365326379 BAM harmonized CPTAC3 1d86c999-d346-42e7-bdea-41d838c1834a 8c646952df1f33f5dd41da1a69509663 {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.WGS.N C3N-02155 LUAD WGS blood_normal CPT0120050002 CPT0120050002.WholeGenome.RP-1303.bam 61394282208 BAM submitted_aligned CPTAC3 9617f4a2-0a94-4e86-aee6-e5ea8c2e1795 8115d6718d6ef66b9bbf7673db2759f5 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02155.WGS.N.hg38 C3N-02155 LUAD WGS blood_normal CPT0120050002 d7a1f593-71f7-4f1c-be1e-23a63fd78c5d_wgs_gdc_realn.bam 93200654909 BAM harmonized CPTAC3 0cc62591-f95e-45ef-bbea-eab30a0d7770 e6ec9c70c47ef2ff05db4f3ae1a300b6 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02155.WGS.T C3N-02155 LUAD WGS tumor CPT0118810006 CPT0118810006.WholeGenome.RP-1303.bam 60518574056 BAM submitted_aligned CPTAC3 84ade3b8-8a04-4e90-b9f1-ab153f97f64a 31cbf7ca8b8d5adbf5f3f782d8deed33 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.WGS.T.hg38 C3N-02155 LUAD WGS tumor CPT0118810006 10cc6e4f-85a1-4d9b-a238-73cbb21ad04b_wgs_gdc_realn.bam 90606374205 BAM harmonized CPTAC3 f5ac4d2a-bc3a-4a8b-b419-4e74e56073b3 aa665d706819f4c369d70145bdf180d5 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.WXS.A C3N-02155 LUAD WXS tissue_normal CPT0118830009 CPT0118830009.WholeExome.RP-1303.bam 36808744569 BAM submitted_aligned CPTAC3 d8b6e44b-cc2c-4610-9857-80692eefddd1 cf74e47c7df4154a9e56e25009a96a2f {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.WXS.A.hg38 C3N-02155 LUAD WXS tissue_normal CPT0118830009 ed19b4b1-22a5-412b-bb6e-b00d0f084006_wxs_gdc_realn.bam 49569792896 BAM harmonized CPTAC3 caded12b-bb32-4eea-848b-81ad0ffb495b a664837ba33ab6be3a5d3785e2266f4a {"aliquot_tag": "ALQ_22d6456e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02155.WXS.N C3N-02155 LUAD WXS blood_normal CPT0120050002 CPT0120050002.WholeExome.RP-1303.bam 41252251582 BAM submitted_aligned CPTAC3 7172cf5d-7aa9-4725-b950-152263d0d6ec e40cdd6dafbb63db705aeaafdc91d3c0 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02155.WXS.N.hg38 C3N-02155 LUAD WXS blood_normal CPT0120050002 d7a1f593-71f7-4f1c-be1e-23a63fd78c5d_wxs_gdc_realn.bam 53809996765 BAM harmonized CPTAC3 40a3338b-9fb7-4e8b-8837-16607de5f635 9a490cd753bf9365dfd5e6b254fab0d5 {"aliquot_tag": "ALQ_6b77a2af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02155.WXS.T C3N-02155 LUAD WXS tumor CPT0118810006 CPT0118810006.WholeExome.RP-1303.bam 54801946019 BAM submitted_aligned CPTAC3 675a43c6-a8b9-4039-845f-f302c0e58445 2081701a2e33eaa6bd3d0417ccfd8c02 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02155.WXS.T.hg38 C3N-02155 LUAD WXS tumor CPT0118810006 10cc6e4f-85a1-4d9b-a238-73cbb21ad04b_wxs_gdc_realn.bam 74001367606 BAM harmonized CPTAC3 243e3716-55b5-4322-817c-390639f79182 b2b3a98b8e37a08436246ebcd12b5a33 {"aliquot_tag": "ALQ_c8a90b9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.MethArray.Green.A C3N-02158 LUAD Methylation_Array tissue_normal CPT0118890009 203028200093_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e20dc523-a892-4646-acac-b2693d58107d 233e39284a071124fbc9bdc504452bcc {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.MethArray.Green.T C3N-02158 LUAD Methylation_Array tumor CPT0118880006 202234370120_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 79f025a7-a4d1-437b-a059-0dcf07d57370 fc336a283b82d784a2a74637bf50aaf4 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.MethArray.Red.A C3N-02158 LUAD Methylation_Array tissue_normal CPT0118890009 203028200093_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 de880f59-cf2a-4f33-941f-cb7ff65baf80 f05b45b922634657ee22e59bfa801094 {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.MethArray.Red.T C3N-02158 LUAD Methylation_Array tumor CPT0118880006 202234370120_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 20b6def1-5813-45f4-bf2f-047c16769ca5 c5468f58404c383d4d9a2f71ddf3279a {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.miRNA-Seq.A.hg38 C3N-02158 LUAD miRNA-Seq tissue_normal CPT0118890006 1c8689ad-d70b-41b8-9678-1f4084515582_mirnaseq_gdc_realn.bam 252114178 BAM harmonized CPTAC3 01feb945-83b4-4a5d-8fc3-0665e666b527 7f49b042b07063df68dc161b11608ce0 {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.miRNA-Seq.S22_L004_R1.T C3N-02158 LUAD miRNA-Seq tumor CPT0118880009 181119_UNC31-K00269_0165_AH27WCBBXY_TCCCGA_S22_L004_R1_001.unaln.bam 264369901 BAM S22_L004_R1 submitted_unaligned CPTAC3 3084f7a8-c3d1-4f18-b34b-fe434127da81 d38deb498ef5a12596456542117f8b51 {"aliquot_tag": "ALQ_5506747f", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.miRNA-Seq.S47_L006_R1.A C3N-02158 LUAD miRNA-Seq tissue_normal CPT0118890006 181108_UNC31-K00269_0162_AH255GBBXY_GAGTGG_S47_L006_R1_001.unaln.bam 227045241 BAM S47_L006_R1 submitted_unaligned CPTAC3 9ce26a03-4a39-47b3-baba-e4b40ee85dab 762218f340d51397747dceba684411b7 {"aliquot_tag": "ALQ_f8d9405e", "sample": "S47", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.miRNA-Seq.T.hg38 C3N-02158 LUAD miRNA-Seq tumor CPT0118880009 de54dfcb-f221-402a-9e22-4913de4d2859_mirnaseq_gdc_realn.bam 285881759 BAM harmonized CPTAC3 647bd772-c614-4da8-92b8-080e9b3810d6 bb944e6e916053e50c79595830b9c1e7 {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.RNA-Seq.chimeric.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.chimeric.gdc_realn.bam 148160718 BAM chimeric harmonized CPTAC3 b0376378-2110-4100-8ee0-2e6278fb0c69 19aeb74e35f109587773884ac6103642 {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.RNA-Seq.chimeric.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.chimeric.gdc_realn.bam 40971506 BAM chimeric harmonized CPTAC3 b7b4781c-1ddb-4c7e-9f54-a11270b0e8c1 224057da30f7ca3a020e8f1bced6e9bd {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.RNA-Seq.genomic.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.genomic.gdc_realn.bam 8963973694 BAM genomic harmonized CPTAC3 055deaf1-b949-42c1-8f7d-380a8db6a339 56d6a04375b0f5b8c532823756c449b2 {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.RNA-Seq.genomic.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.genomic.gdc_realn.bam 7722666441 BAM genomic harmonized CPTAC3 57ee7913-c0fc-4b4b-aff2-aeb086ae232c e4425ee19ded64ad90faaf1e458e3eff {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.RNA-Seq.S14_L004_R1.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R1_001.fastq.gz 4455016308 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 008de630-33d2-4874-ba58-b5638a251549 4389f9929e21318e6c0c818ad949c6f3 {"aliquot_tag": "ALQ_f8d9405e", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.RNA-Seq.S14_L004_R2.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R2_001.fastq.gz 4865676229 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 1e3b88a5-6add-48a0-b1c6-b236f8347f1a 6ddd051bba540a9386459c261550729c {"aliquot_tag": "ALQ_f8d9405e", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.RNA-Seq.S23_L006_R1.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R1_001.fastq.gz 3626537852 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 7f8a162d-54b9-4511-96d1-8a3a47a24964 e8f6a7cfefa4b4f6377a43bd007e9506 {"aliquot_tag": "ALQ_5506747f", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.RNA-Seq.S23_L006_R2.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R2_001.fastq.gz 4095542003 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 ecfcbaf3-fa4d-404c-a7cb-d8ce868b611e 3d13e5979b94c5229f2416127a7cb638 {"aliquot_tag": "ALQ_5506747f", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.RNA-Seq.transcriptome.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.transcriptome.gdc_realn.bam 11589460194 BAM transcriptome harmonized CPTAC3 382846c0-7db0-466c-bd3a-34a8a3b4ce11 35fac63d9a01a877b71b799cda91c65c {"aliquot_tag": "ALQ_f8d9405e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.RNA-Seq.transcriptome.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.transcriptome.gdc_realn.bam 10981713037 BAM transcriptome harmonized CPTAC3 89ae2bfe-e9c6-403a-8405-b113d9ec8930 76439d0a8bd954033fd6066afd42b928 {"aliquot_tag": "ALQ_5506747f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.WGS.A C3N-02158 LUAD WGS tissue_normal CPT0118890009 CPT0118890009.WholeGenome.RP-1303.bam 58314843100 BAM submitted_aligned CPTAC3 49d3296b-e6b6-42d2-a952-44925b3ac612 d4cf5c66a37e2bc50e9c50e312a279ba {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.WGS.A.hg38 C3N-02158 LUAD WGS tissue_normal CPT0118890009 000d033c-72ae-4b2b-8b43-a8164c33f10c_wgs_gdc_realn.bam 85350998294 BAM harmonized CPTAC3 1995f31a-9560-4a55-a6df-4d404b816a21 3e458bbb836382f44cf39ee57ec52c01 {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.WGS.N C3N-02158 LUAD WGS blood_normal CPT0120110002 CPT0120110002.WholeGenome.RP-1303.bam 54939623529 BAM submitted_aligned CPTAC3 0c01ee94-c662-4fb5-80e9-58a0681c42b7 36a586498d5e50c402618f307a66309f {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02158.WGS.N.hg38 C3N-02158 LUAD WGS blood_normal CPT0120110002 82c5ffdb-1610-46ff-ad84-2121cdef55e6_wgs_gdc_realn.bam 82583673686 BAM harmonized CPTAC3 aa23a83a-4678-4eba-80d3-bb3103cde067 fb78786c1e667ec699d70c2be41356c4 {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02158.WGS.T C3N-02158 LUAD WGS tumor CPT0118880006 CPT0118880006.WholeGenome.RP-1303.bam 63901356688 BAM submitted_aligned CPTAC3 be399a46-e995-45c9-a2e9-7499f1447bf1 5f115aaacd555f319775bcab25e30498 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.WGS.T.hg38 C3N-02158 LUAD WGS tumor CPT0118880006 a12d567c-c0f4-4ff6-90d6-172f50402e90_wgs_gdc_realn.bam 93782603621 BAM harmonized CPTAC3 9bf1819a-7615-4a94-a664-10349342e0a9 f1395b9093b3ab50bb9eb6dcdf8a0105 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.WXS.A C3N-02158 LUAD WXS tissue_normal CPT0118890009 CPT0118890009.WholeExome.RP-1303.bam 30828769032 BAM submitted_aligned CPTAC3 a5f37f0a-e341-460c-a53b-7eef86c98874 076cb0bd1513de7a4d3bab70b0216fce {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.WXS.A.hg38 C3N-02158 LUAD WXS tissue_normal CPT0118890009 000d033c-72ae-4b2b-8b43-a8164c33f10c_wxs_gdc_realn.bam 41461064285 BAM harmonized CPTAC3 29eddf52-f350-41fe-b3ff-910fda1640a4 17d1236e5907554849f1da444e0e6838 {"aliquot_tag": "ALQ_68665dcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02158.WXS.N C3N-02158 LUAD WXS blood_normal CPT0120110002 CPT0120110002.WholeExome.RP-1303.bam 25237975565 BAM submitted_aligned CPTAC3 e76f8d6c-4f0d-47af-b6f9-f27481aa80a7 b436e7e2b1b823c9f9687ce460ee2177 {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02158.WXS.N.hg38 C3N-02158 LUAD WXS blood_normal CPT0120110002 82c5ffdb-1610-46ff-ad84-2121cdef55e6_wxs_gdc_realn.bam 33485647619 BAM harmonized CPTAC3 c67d4ccc-db44-4a28-850d-a4574f4de5d6 07bc4c0e6bab27981c1f83a6520a4ab2 {"aliquot_tag": "ALQ_55abd7ca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02158.WXS.T C3N-02158 LUAD WXS tumor CPT0118880006 CPT0118880006.WholeExome.RP-1303.bam 34193253513 BAM submitted_aligned CPTAC3 ba57f36c-9abe-4a2f-8a4f-3511cb114621 209274e7b06f1a790a703f4277cdd264 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02158.WXS.T.hg38 C3N-02158 LUAD WXS tumor CPT0118880006 a12d567c-c0f4-4ff6-90d6-172f50402e90_wxs_gdc_realn.bam 46354989653 BAM harmonized CPTAC3 c8136f3c-2089-42f4-8fbf-5f38df538ec6 f3e7a96d8e51e71f36ec478c80c1f896 {"aliquot_tag": "ALQ_c5b969ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.MethArray.Green.A C3N-02160 CCRCC Methylation_Array tissue_normal CPT0213970006 204373100108_R02C01_Grn.idat 13677950 IDAT Green NA CPTAC3 b3523cfd-3868-47f1-b793-6528543b7fe9 1e591c5c95cb09498423639c23e263aa {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.MethArray.Green.T C3N-02160 CCRCC Methylation_Array tumor CPT0213960006 203028200100_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1d5d9c82-87d5-4c71-9859-7448ed49a216 b8f76376955eb4b5e0a3522360b28c3d {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.MethArray.Red.A C3N-02160 CCRCC Methylation_Array tissue_normal CPT0213970006 204373100108_R02C01_Red.idat 13677950 IDAT Red NA CPTAC3 f8b7a3b4-09e9-47fb-abf5-d23f854946aa fc4d6f87ebccda6bcca66509a0d4d42b {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.MethArray.Red.T C3N-02160 CCRCC Methylation_Array tumor CPT0213960006 203028200100_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 134ec664-291e-4d44-9aaf-16f72ed24d82 2a271cdc4dd7c0560a52d1eaa17a025a {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.miRNA-Seq.A.hg38 C3N-02160 CCRCC miRNA-Seq tissue_normal CPT0213970009 52d7413f-e80a-4e0f-a7de-96e4f54fb9a3_mirnaseq_gdc_realn.bam 214761207 BAM harmonized CPTAC3 d99b231e-1725-4750-b289-8937dfd8fdbc 9237de361867ce27fc0461e37ce881ca {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.miRNA-Seq.S3_L003_R1.A C3N-02160 CCRCC miRNA-Seq tissue_normal CPT0213970009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGGCA_S3_L003_R1_001.unaln.bam 194149956 BAM S3_L003_R1 submitted_unaligned CPTAC3 54d88906-1f77-4fc2-bf52-d69c99169925 9f33d2f430d2142a6cd73238e51e03ca {"aliquot_tag": "ALQ_27805834", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.miRNA-Seq.S46_L002_R1.T C3N-02160 CCRCC miRNA-Seq tumor CPT0213960013 190206_UNC31-K00269_0191_AH2WY5BBXY_TTAGGC_S46_L002_R1_001.unaln.bam 202268661 BAM S46_L002_R1 submitted_unaligned CPTAC3 dce015cd-a0ef-4b54-98ae-14dd05a54253 9c1d02846e6582abc9f626a89b43eb08 {"aliquot_tag": "ALQ_e32ea9db", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.miRNA-Seq.T.hg38 C3N-02160 CCRCC miRNA-Seq tumor CPT0213960013 fb6da363-348c-4ea3-bc93-465cf34a8ee9_mirnaseq_gdc_realn.bam 219537973 BAM harmonized CPTAC3 af4dc7b4-9306-4ebb-98d7-f722bf886ffb 4afee5cf6a9cffbad72f573fdba48162 {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.RNA-Seq.chimeric.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.chimeric.gdc_realn.bam 26881827 BAM chimeric harmonized CPTAC3 3c82bba9-b3c0-4382-a1fc-b2204b0079de cc3abfb01915d53f37ab7f615ddf0f6a {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.RNA-Seq.chimeric.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.chimeric.gdc_realn.bam 146640441 BAM chimeric harmonized CPTAC3 82202c27-c3dd-4b26-878d-6fffff8245c5 2db3ed09d6286b1a1971d246f07362da {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.RNA-Seq.genomic.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.genomic.gdc_realn.bam 5993147730 BAM genomic harmonized CPTAC3 55e92ae1-5f35-436d-94c3-885066424031 15d7ceed691183a8e6a99201002de563 {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.RNA-Seq.genomic.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.genomic.gdc_realn.bam 6511105230 BAM genomic harmonized CPTAC3 37f72a8d-9260-472b-a308-e1aa625d1a78 f8467f883780cf03f900e16f6e7fb1e5 {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.RNA-Seq.S10_L003_R1.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 2583516049 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 6311faa9-c7e3-47b5-af45-ee9751856c2e f323cda1957e925e1f5bfc77200a8513 {"aliquot_tag": "ALQ_e32ea9db", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.RNA-Seq.S10_L003_R2.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 2861016981 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 d91ebfcb-32c7-415b-b592-9e65bc58b765 9ed7e25fb176087a0848f5d117555172 {"aliquot_tag": "ALQ_e32ea9db", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.RNA-Seq.S20_L006_R1.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R1_001.fastq.gz 2689274844 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 654f49bd-2dc4-4914-a25f-5e5e6a10b989 16aa4b39e7943e892b94e28fd21ba79f {"aliquot_tag": "ALQ_27805834", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.RNA-Seq.S20_L006_R2.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R2_001.fastq.gz 2966925408 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 aaabdf49-a38f-423c-928d-ba307769224b 3abaa826dcb45ba449cc082e5e08075d {"aliquot_tag": "ALQ_27805834", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.RNA-Seq.transcriptome.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.transcriptome.gdc_realn.bam 6935610412 BAM transcriptome harmonized CPTAC3 ae5891f1-a553-4bd6-ad2a-19b3f7d927e3 cd74cb617782160e9de27d5e44a70df1 {"aliquot_tag": "ALQ_27805834", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.RNA-Seq.transcriptome.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.transcriptome.gdc_realn.bam 7756258287 BAM transcriptome harmonized CPTAC3 585c11e5-1fd5-4b27-b192-666673d7d8f6 0deb620daf109aa9f3fb59692ec7ad73 {"aliquot_tag": "ALQ_e32ea9db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.WGS.A C3N-02160 CCRCC WGS tissue_normal CPT0213970006 CPT0213970006.WholeGenome.RP-1303.bam 61890070939 BAM submitted_aligned CPTAC3 75b3b09f-9563-42cb-883e-205ca6fc86b5 50f7dd5e299fe862b60d05563fe8cd1a {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.WGS.A.hg38 C3N-02160 CCRCC WGS tissue_normal CPT0213970006 f7eb4d17-b505-46f4-89f4-da1c5695a5e2_wgs_gdc_realn.bam 92757430169 BAM harmonized CPTAC3 ceb27de7-e54f-4550-8793-52bae5d871fe b8b2768ae76bbd8a94b8e9825b1f23db {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.WGS.N C3N-02160 CCRCC WGS blood_normal CPT0214050002 CPT0214050002.WholeGenome.RP-1303.bam 57260754635 BAM submitted_aligned CPTAC3 368e382c-eccd-4741-a8b5-ccc2c1c6877e e7b2df7b541552cd0069355542c29665 {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02160.WGS.N.hg38 C3N-02160 CCRCC WGS blood_normal CPT0214050002 b640cb8c-22a3-464c-933b-c3e629a50151_wgs_gdc_realn.bam 86079125804 BAM harmonized CPTAC3 058de670-783e-48ee-9e7a-fdff23f06bd7 d9252fb0dcd10400c02b48473beae5be {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02160.WGS.T C3N-02160 CCRCC WGS tumor CPT0213960006 CPT0213960006.WholeGenome.RP-1303.bam 68171293125 BAM submitted_aligned CPTAC3 33aad6e9-a904-4323-9fe3-20f6e3c464cb e46514fcfcb4e9fa36d3de07b4a94a19 {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.WGS.T.hg38 C3N-02160 CCRCC WGS tumor CPT0213960006 087767ce-29e8-4d56-b6aa-afe6f226d188_wgs_gdc_realn.bam 101842901175 BAM harmonized CPTAC3 209bdbfd-9b70-4eb0-b310-c7ad95f067ae 320571d01a61b2c510e87419cdd370be {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.WXS.A C3N-02160 CCRCC WXS tissue_normal CPT0213970006 CPT0213970006.WholeExome.RP-1303.bam 20791384360 BAM submitted_aligned CPTAC3 d4390e88-c6ce-464f-8da3-7f5769fa9c86 1b275b428f2f5ede6aa661c09017c52f {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.WXS.A.hg38 C3N-02160 CCRCC WXS tissue_normal CPT0213970006 f7eb4d17-b505-46f4-89f4-da1c5695a5e2_wxs_gdc_realn.bam 28377424598 BAM harmonized CPTAC3 b082a47a-738a-4959-8588-795a9715b42b 9a68b980a1501eb6660340edb3e622e9 {"aliquot_tag": "ALQ_b73f45a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02160.WXS.N C3N-02160 CCRCC WXS blood_normal CPT0214050002 CPT0214050002.WholeExome.RP-1303.bam 30208734744 BAM submitted_aligned CPTAC3 af29d74f-b297-4730-98af-f08fc0109a97 0bdf5145f62d2f1dec7d42bbba0ade13 {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02160.WXS.N.hg38 C3N-02160 CCRCC WXS blood_normal CPT0214050002 b640cb8c-22a3-464c-933b-c3e629a50151_wxs_gdc_realn.bam 40860357709 BAM harmonized CPTAC3 4f9f1627-b55b-4a29-b272-3bf05c38d27a 4f3e08948da87922b6f0fab65be24afc {"aliquot_tag": "ALQ_283abd9a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02160.WXS.T C3N-02160 CCRCC WXS tumor CPT0213960006 CPT0213960006.WholeExome.RP-1303.bam 24377497024 BAM submitted_aligned CPTAC3 c589be15-0177-4508-b401-c8e1d8582e74 1fa1e3298e963906cd7a22a3b84e0aa1 {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02160.WXS.T.hg38 C3N-02160 CCRCC WXS tumor CPT0213960006 087767ce-29e8-4d56-b6aa-afe6f226d188_wxs_gdc_realn.bam 35163647952 BAM harmonized CPTAC3 51221f0b-dd38-40fd-8c84-468659eb900e 6bc4094f902028a996b5984159e178e2 {"aliquot_tag": "ALQ_8a5f6c15", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.MethArray.Green.T C3N-02181 GBM Methylation_Array tumor CPT0168380006 203027390089_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 cd5b6f51-f29a-4362-ac39-1ddc3b8be562 b8eb608ba5100dc8e1ddf1a5d69246e5 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.MethArray.Red.T C3N-02181 GBM Methylation_Array tumor CPT0168380006 203027390089_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 4d4f3920-d919-47fa-856a-e9a6cc6f4fce c619798bf52e671067a9d03c3d9a8867 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.miRNA-Seq.S17_L001_R1.T C3N-02181 GBM miRNA-Seq tumor CPT0168380009 181119_UNC31-K00269_0165_AH27WCBBXY_GACGAC_S17_L001_R1_001.unaln.bam 252023080 BAM S17_L001_R1 submitted_unaligned CPTAC3 c6e3042e-e0ef-4d5c-95fc-04a9f413ce0d 7915fccc3b7146d195b7fa16a50a2f57 {"aliquot_tag": "ALQ_35048da5", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.miRNA-Seq.T.hg38 C3N-02181 GBM miRNA-Seq tumor CPT0168380009 c978dbae-6952-4b3c-932f-eaf03b8c80b8_mirnaseq_gdc_realn.bam 286848612 BAM harmonized CPTAC3 197b8779-3929-4e07-9f19-23e3ef205012 4c153e2109c368fb4f1a18df5c682c65 {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.RNA-Seq.chimeric.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.chimeric.gdc_realn.bam 42912871 BAM chimeric harmonized CPTAC3 d83cb1c0-4cff-4957-87e0-61e60c1aa925 47c48880739391c278218d9ebeeb8534 {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.RNA-Seq.genomic.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.genomic.gdc_realn.bam 9332379370 BAM genomic harmonized CPTAC3 0edcbca0-e434-45af-84d3-d13850b051a0 ce5108602bcc92ff7258f4d720e5ed3f {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.RNA-Seq.S3_L001_R1.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4264542017 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 cfb8fa20-a639-42fc-873a-9d07271e3122 be7f8c24345c061b57777f7ca4b1bcf8 {"aliquot_tag": "ALQ_35048da5", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.RNA-Seq.S3_L001_R2.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4670211980 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 b32e9f2c-4aae-4bd8-bc47-7134bc1bb92c 62bb18a19e1f201121b20d9c0a13b22f {"aliquot_tag": "ALQ_35048da5", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.RNA-Seq.transcriptome.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.transcriptome.gdc_realn.bam 11885329706 BAM transcriptome harmonized CPTAC3 e2c3d0fc-a230-43ae-ac13-5277f2bd3de7 4214279281cf8bdaf54eda0cbf78550b {"aliquot_tag": "ALQ_35048da5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.scRNA-Seq.S4_L003_R1.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R1_001.fastq.gz 13201477088 FASTQ S4_L003_R1 submitted_unaligned CPTAC3 37025c07-5429-415d-97b7-2146c0dea79d 7975a1e42ea5b6028d136606486f7a2b {"aliquot_tag": "ALQ_52aec059", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.scRNA-Seq.S4_L003_R2.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R2_001.fastq.gz 31578941138 FASTQ S4_L003_R2 submitted_unaligned CPTAC3 dbc7f1b2-21b1-4506-8c2d-fef4951a0b10 82e73bee1aa0fcff8affe78e57ed2aff {"aliquot_tag": "ALQ_52aec059", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.scRNA-Seq.T.hg38 C3N-02181 GBM scRNA-Seq tumor CPT0168380014 possorted_genome_bam.bam 37509207219 BAM harmonized CPTAC3 834eaf46-4552-457c-bd67-b9dfa9161dfa d2a07f4abad92635679a530c69d563d9 {"aliquot_tag": "ALQ_52aec059", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.WGS.N C3N-02181 GBM WGS blood_normal CPT0168430002 CPT0168430002.WholeGenome.RP-1303.bam 61662926101 BAM submitted_aligned CPTAC3 ddc57c40-b987-4ab8-abcd-3238e31dff72 689a11f1b546d7d392dbc89d22e43694 {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02181.WGS.N.hg38 C3N-02181 GBM WGS blood_normal CPT0168430002 c1dac155-9fca-4217-893e-8b02a8e95dd4_wgs_gdc_realn.bam 90545302597 BAM harmonized CPTAC3 cfde6003-aa52-42d0-b12c-ec711668f23b b681c09adbebb5d780462d6bd0858923 {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02181.WGS.T C3N-02181 GBM WGS tumor CPT0168380006 CPT0168380006.WholeGenome.RP-1303.bam 63204082007 BAM submitted_aligned CPTAC3 f6710fcd-9939-4c1b-a321-ca7614e48ba2 1127701d6e4052f44a7149a0bec181f7 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.WGS.T.hg38 C3N-02181 GBM WGS tumor CPT0168380006 90b9cda0-892e-4532-a1c5-44df34c0e5a4_wgs_gdc_realn.bam 93689448748 BAM harmonized CPTAC3 80bbd168-8f00-4412-ab15-83603e4abdb6 33c122ab2cade53ef37cb6bf8b023f09 {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.WXS.N C3N-02181 GBM WXS blood_normal CPT0168430002 CPT0168430002.WholeExome.RP-1303.bam 32928218822 BAM submitted_aligned CPTAC3 e2f21166-222d-490f-984d-6c136da50b2c b9a102caa35101022083de505c698cad {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02181.WXS.N.hg38 C3N-02181 GBM WXS blood_normal CPT0168430002 c1dac155-9fca-4217-893e-8b02a8e95dd4_wxs_gdc_realn.bam 43830549996 BAM harmonized CPTAC3 85738bba-cb76-4625-afbd-72e17c915593 c485f9a7d95ebcbe3661f6e0f1fda638 {"aliquot_tag": "ALQ_c8035584", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02181.WXS.T C3N-02181 GBM WXS tumor CPT0168380006 CPT0168380006.WholeExome.RP-1303.bam 30188644753 BAM submitted_aligned CPTAC3 ac3d32e2-2432-417b-a1a3-34207abb8bf0 418631a3d1e8491cd60bd9d26c2e8b9a {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02181.WXS.T.hg38 C3N-02181 GBM WXS tumor CPT0168380006 90b9cda0-892e-4532-a1c5-44df34c0e5a4_wxs_gdc_realn.bam 40864241441 BAM harmonized CPTAC3 34380b11-99f1-42de-b77e-bcfb6a36f496 d1207a3b2a751b7b2efd4a2cf182447b {"aliquot_tag": "ALQ_a5bb9034", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.MethArray.Green.T C3N-02183 GBM Methylation_Array tumor CPT0168480006 203028200034_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e5a923a-521e-4d66-9a1d-ae5729304378 47f18de0b646ec8d06dd04651eab6cbd {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.MethArray.Red.T C3N-02183 GBM Methylation_Array tumor CPT0168480006 203028200034_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 9c9237b2-f9a4-4fda-bc3b-e4e433ca7601 86c3758e93b1c7ca0214dafe4e725df0 {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.miRNA-Seq.S18_L001_R1.T C3N-02183 GBM miRNA-Seq tumor CPT0168480009 181119_UNC31-K00269_0165_AH27WCBBXY_TAATCG_S18_L001_R1_001.unaln.bam 204768676 BAM S18_L001_R1 submitted_unaligned CPTAC3 e5155a5d-7e7a-43b6-82bc-58b503d6aeb4 7f467039c06adffcc8c38b956ba00e0b {"aliquot_tag": "ALQ_2801bd1d", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.miRNA-Seq.T.hg38 C3N-02183 GBM miRNA-Seq tumor CPT0168480009 46f07322-3429-4ed4-9a44-3b08c39482f2_mirnaseq_gdc_realn.bam 224040892 BAM harmonized CPTAC3 17e0f6e7-270f-4c22-93c4-590c49a811a7 a8beb220a5f85c9a7b8bae2780699918 {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.RNA-Seq.chimeric.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.chimeric.gdc_realn.bam 27988826 BAM chimeric harmonized CPTAC3 9df0c459-f17f-41f6-8c6a-647bc725bd79 ef17d467d483742a0a23b606575b256e {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.RNA-Seq.genomic.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.genomic.gdc_realn.bam 8150404796 BAM genomic harmonized CPTAC3 c74179fd-daf9-4c81-b450-bd69100b4633 8b794f65e68d12ff1f7adc3332175873 {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.RNA-Seq.S2_L001_R1.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3716036241 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 7937d42d-b381-45a1-b45c-935d6359482e 06e065000048f9daad4350c34de19308 {"aliquot_tag": "ALQ_2801bd1d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.RNA-Seq.S2_L001_R2.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3806358030 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 76ab475c-3258-41fc-ad50-a91680b3cd9e 907afa6f8bd2bfb9d7f3cd311e544f3e {"aliquot_tag": "ALQ_2801bd1d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.RNA-Seq.transcriptome.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.transcriptome.gdc_realn.bam 10860856447 BAM transcriptome harmonized CPTAC3 9794528a-98be-4856-a376-6bba9f19bdd1 7e862a7c2ec057177e43f5f1be1bec51 {"aliquot_tag": "ALQ_2801bd1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.WGS.N C3N-02183 GBM WGS blood_normal CPT0168540004 CPT0168540004.WholeGenome.RP-1303.bam 53209010684 BAM submitted_aligned CPTAC3 c21fa708-fb23-4c08-a5c9-1a8fc9061ae5 8b1ad49713f06760a295e857b71feffe {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02183.WGS.N.hg38 C3N-02183 GBM WGS blood_normal CPT0168540004 ede2c262-e52f-4ba3-a802-058195b89e64_wgs_gdc_realn.bam 78172680973 BAM harmonized CPTAC3 226a2938-6b47-4ad8-a6d0-f7e4eb129a14 0283017417a7502107d0b1109196ae89 {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02183.WGS.T C3N-02183 GBM WGS tumor CPT0168480006 CPT0168480006.WholeGenome.RP-1303.bam 62074141718 BAM submitted_aligned CPTAC3 fe2a75f0-f485-40c9-bb7b-a594a9f3fec5 f1f3c2fcba08eb2ed9d84bbac52bf12d {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.WGS.T.hg38 C3N-02183 GBM WGS tumor CPT0168480006 bd96ecbf-17b9-4dac-8090-05191cf90ee5_wgs_gdc_realn.bam 92015884024 BAM harmonized CPTAC3 54b12602-3d4f-4610-9667-10493d4d84ab f43bd639d08d9afb996df2fa1bf338cb {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.WXS.N C3N-02183 GBM WXS blood_normal CPT0168540004 CPT0168540004.WholeExome.RP-1303.bam 36830321938 BAM submitted_aligned CPTAC3 c5654d45-a6e9-435e-8be3-bc2968631856 aba74343dbb115c84cdd4e01630e0e02 {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02183.WXS.N.hg38 C3N-02183 GBM WXS blood_normal CPT0168540004 ede2c262-e52f-4ba3-a802-058195b89e64_wxs_gdc_realn.bam 50537898593 BAM harmonized CPTAC3 4e29d77c-86c1-43c7-8f95-21ce1fe38320 2dd5e66801e917c49b1678732f3e9f8a {"aliquot_tag": "ALQ_581cff04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02183.WXS.T C3N-02183 GBM WXS tumor CPT0168480006 CPT0168480006.WholeExome.RP-1303.bam 21209100825 BAM submitted_aligned CPTAC3 ad550efd-d975-4676-b66a-e3a87f42d2f6 b93d14546392dcc9574f5afbba929f19 {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02183.WXS.T.hg38 C3N-02183 GBM WXS tumor CPT0168480006 bd96ecbf-17b9-4dac-8090-05191cf90ee5_wxs_gdc_realn.bam 29367689402 BAM harmonized CPTAC3 041d0fdd-8bf4-40f8-b215-0385d5905320 65965d33b489483c6b655cd383619170 {"aliquot_tag": "ALQ_b8bea08c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.MethArray.Green.T C3N-02185 GBM Methylation_Array tumor CPT0168590006 203027390091_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 83ee9ac7-be0d-4f92-9c83-41433e603b64 140296c3942e5eb12ad2c8920cb7b11d {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.MethArray.Red.T C3N-02185 GBM Methylation_Array tumor CPT0168590006 203027390091_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 4ac5780f-a9d6-4cc2-a866-ca9ffdf61502 9093e104bcff6a7ae323fb49f576d1b3 {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.miRNA-Seq.S19_L001_R1.T C3N-02185 GBM miRNA-Seq tumor CPT0168590009 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L001_R1_001.unaln.bam 210363744 BAM S19_L001_R1 submitted_unaligned CPTAC3 41215cb6-08bc-48f5-a21a-9823378c3a7b 50e99f0ce03579bad5dfe51af1ab8503 {"aliquot_tag": "ALQ_de3d4708", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.miRNA-Seq.T.hg38 C3N-02185 GBM miRNA-Seq tumor CPT0168590009 3bec02b2-5e83-493d-8ec8-61bc1d06456a_mirnaseq_gdc_realn.bam 240134900 BAM harmonized CPTAC3 b4707c2c-df15-4ba2-8362-eb3a8abacbdd dacd2627886254fceccbed114159e04f {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.RNA-Seq.chimeric.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.chimeric.gdc_realn.bam 32247072 BAM chimeric harmonized CPTAC3 f89dec97-55fe-45c2-9ed5-63336d4bde86 273b5dc03825653df2dd2064124d3655 {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.RNA-Seq.genomic.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.genomic.gdc_realn.bam 8917268248 BAM genomic harmonized CPTAC3 e3a5e97d-6bb3-4280-9f9f-324ef42985f1 e4a42d7134580bd447f684198510654c {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.RNA-Seq.S1_L001_R1.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4081098049 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 9d2fbbc6-40d1-4832-a3bf-f619f4cdbb71 aa8799909db21e55d05a191f10ad7a41 {"aliquot_tag": "ALQ_de3d4708", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.RNA-Seq.S1_L001_R2.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4373203364 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 2e1b3952-7b8a-4b7e-b0e8-e79078c3648e 6d0424f24acf343bb24092bb90d3de6a {"aliquot_tag": "ALQ_de3d4708", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.RNA-Seq.transcriptome.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.transcriptome.gdc_realn.bam 11343477657 BAM transcriptome harmonized CPTAC3 c0d3f20b-00b0-4dcd-8bd9-b7ff5f37810d 2e439e9dbfffb87bda491af31e800d61 {"aliquot_tag": "ALQ_de3d4708", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.WGS.N C3N-02185 GBM WGS blood_normal CPT0168650002 CPT0168650002.WholeGenome.RP-1303.bam 54313533743 BAM submitted_aligned CPTAC3 d40bd842-0e49-4351-a5fd-b0d587115940 d5d2e9ed0b096a6605d40d51b0fdc6b4 {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02185.WGS.N.hg38 C3N-02185 GBM WGS blood_normal CPT0168650002 ed416ffd-7a75-4a7c-b34c-b0d650cb5115_wgs_gdc_realn.bam 79381413593 BAM harmonized CPTAC3 35c10200-63e3-4aa0-a326-06081c354282 c8340ab7b26d45ec78c88dc283072f22 {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02185.WGS.T C3N-02185 GBM WGS tumor CPT0168590006 CPT0168590006.WholeGenome.RP-1303.bam 62380492645 BAM submitted_aligned CPTAC3 58f7f8d5-e115-4044-bb92-3ef3aec3b1ad 64f6b1ab688a11fa9186de56d2a4d085 {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.WGS.T.hg38 C3N-02185 GBM WGS tumor CPT0168590006 98a99ed8-3078-434b-8734-672dfba4299f_wgs_gdc_realn.bam 91562944421 BAM harmonized CPTAC3 28becd2a-daf1-4ec5-8d0d-7634249c7bd1 9b383dd62d63833c1fbca77f721d726d {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.WXS.N C3N-02185 GBM WXS blood_normal CPT0168650002 CPT0168650002.WholeExome.RP-1303.bam 40597110082 BAM submitted_aligned CPTAC3 fb3674c5-73b2-4712-b17b-66f2ed6cd104 3bb29c8aab8cbc74b26e6abc63ac3ba9 {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02185.WXS.N.hg38 C3N-02185 GBM WXS blood_normal CPT0168650002 ed416ffd-7a75-4a7c-b34c-b0d650cb5115_wxs_gdc_realn.bam 55158082610 BAM harmonized CPTAC3 a2bfc7cd-09b3-4cc2-9db7-31df84db6515 ef444755c44994e3c77678213a6ffb6f {"aliquot_tag": "ALQ_a8b012f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02185.WXS.T C3N-02185 GBM WXS tumor CPT0168590006 CPT0168590006.WholeExome.RP-1303.bam 23259176811 BAM submitted_aligned CPTAC3 d619d029-d2b6-408f-8916-a6e6b83c3c61 d1f45cade4bacec4e5c1382b00d54844 {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02185.WXS.T.hg38 C3N-02185 GBM WXS tumor CPT0168590006 98a99ed8-3078-434b-8734-672dfba4299f_wxs_gdc_realn.bam 31637843843 BAM harmonized CPTAC3 3fda89be-769f-495c-ab01-cd42c7c7a4b1 480304057033295d4595b3f7328600da {"aliquot_tag": "ALQ_4e825a99", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.MethArray.Green.T C3N-02186 GBM Methylation_Array tumor CPT0168720006 203028200101_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 2c4e60cf-207b-4851-b3b3-4bf4c22c169d e7ef206dd17ca4700c60f41e16d0d42f {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.MethArray.Red.T C3N-02186 GBM Methylation_Array tumor CPT0168720006 203028200101_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 65684d6d-5ab3-4bd4-a790-630304aa9675 87a6126d8f79ad5efd15eb23114d4a8c {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.miRNA-Seq.S20_L001_R1.T C3N-02186 GBM miRNA-Seq tumor CPT0168720009 181119_UNC31-K00269_0165_AH27WCBBXY_TATAAT_S20_L001_R1_001.unaln.bam 231377643 BAM S20_L001_R1 submitted_unaligned CPTAC3 0357425e-fb97-43fd-b72e-80d90db79d9d ada82e2e405c0c9244f92ea9d8b2a780 {"aliquot_tag": "ALQ_e425d712", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.miRNA-Seq.T.hg38 C3N-02186 GBM miRNA-Seq tumor CPT0168720009 c10bcd3f-2623-4f9a-8c57-ffc6604243a6_mirnaseq_gdc_realn.bam 258439383 BAM harmonized CPTAC3 775ca33e-a4ad-4732-8b15-c184591e6e91 37cac2520b4924592a3a41ad9d26aa8c {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.RNA-Seq.chimeric.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.chimeric.gdc_realn.bam 31336797 BAM chimeric harmonized CPTAC3 9abd973a-999e-41e2-9e4f-dc5d13047dda ff652355a6ea9c9b1a2be92027c97059 {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.RNA-Seq.genomic.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.genomic.gdc_realn.bam 8076652000 BAM genomic harmonized CPTAC3 8c4ac4bb-d991-4855-a7e5-5a19b9c81f53 2647816e4825dea1c6e7269bc3c97b69 {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.RNA-Seq.S4_L001_R1.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3677947751 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 8a653e18-e4d3-4fe6-837e-4eeec9cb6d8b c408310e6e14ed3d4a1d2fd31cfe4c29 {"aliquot_tag": "ALQ_e425d712", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.RNA-Seq.S4_L001_R2.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4003134154 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 fe54e8ec-05e4-4ce4-9223-7604b3651819 3955614f781ae5cf2b057d535f160c15 {"aliquot_tag": "ALQ_e425d712", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.RNA-Seq.transcriptome.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.transcriptome.gdc_realn.bam 10128854833 BAM transcriptome harmonized CPTAC3 539e7626-5bb4-477c-816b-fff0edb4435f 8904c4c3701b66dcf712e98a010b36a0 {"aliquot_tag": "ALQ_e425d712", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.WGS.N C3N-02186 GBM WGS blood_normal CPT0168760004 CPT0168760004.WholeGenome.RP-1303.bam 58566308529 BAM submitted_aligned CPTAC3 5931a880-12bf-4e57-98c9-f615ec3959b3 b2337bf06a20a1527064b89cb57413d5 {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02186.WGS.N.hg38 C3N-02186 GBM WGS blood_normal CPT0168760004 90be4c44-6629-4db7-99be-e6f26416714d_wgs_gdc_realn.bam 83909668555 BAM harmonized CPTAC3 ee0a4490-3d5d-4690-8bed-a38db3e2c1a3 a8d03aebd598a3931ad8fc84171b89ba {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02186.WGS.T C3N-02186 GBM WGS tumor CPT0168720006 CPT0168720006.WholeGenome.RP-1303.bam 64176788813 BAM submitted_aligned CPTAC3 718d432a-4bef-4b44-ba38-c5312a314ed9 efde0582097132e9d44b0777c36a2a38 {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.WGS.T.hg38 C3N-02186 GBM WGS tumor CPT0168720006 20703356-6eec-4dc7-a380-a6114fcc278f_wgs_gdc_realn.bam 94007956278 BAM harmonized CPTAC3 d2300cd3-70c3-4ac2-90d7-f96368b4d4ba 19a88cd7a17060b057aa4743ed28f096 {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.WXS.N C3N-02186 GBM WXS blood_normal CPT0168760004 CPT0168760004.WholeExome.RP-1303.bam 34096373855 BAM submitted_aligned CPTAC3 867f02c5-af47-448e-b9ef-2e3dc5a67d51 eecb9a30178f55376b5e9d3486ce7bb9 {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02186.WXS.N.hg38 C3N-02186 GBM WXS blood_normal CPT0168760004 90be4c44-6629-4db7-99be-e6f26416714d_wxs_gdc_realn.bam 45795907957 BAM harmonized CPTAC3 43958c7a-d87e-4914-8b52-adacf6828b9d 6cfadd37c891ca0e7a1a7a1729a764aa {"aliquot_tag": "ALQ_6f140d6f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02186.WXS.T C3N-02186 GBM WXS tumor CPT0168720006 CPT0168720006.WholeExome.RP-1303.bam 22585146830 BAM submitted_aligned CPTAC3 cc7936cb-a1c8-4166-959c-347d927b8135 afe792245ac9affd16bf19564898138f {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02186.WXS.T.hg38 C3N-02186 GBM WXS tumor CPT0168720006 20703356-6eec-4dc7-a380-a6114fcc278f_wxs_gdc_realn.bam 31701022107 BAM harmonized CPTAC3 21d5bbb5-e600-47b1-bb46-eea3c7fcc148 eb8365b944573c0e8f38df03000dcf40 {"aliquot_tag": "ALQ_749aca83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.MethArray.Green.T C3N-02188 GBM Methylation_Array tumor CPT0168830006 203027390049_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0e41c949-652d-4535-bf53-1a08b9f66913 c3971efdd2bd1f026bd7f47e53829818 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.MethArray.Red.T C3N-02188 GBM Methylation_Array tumor CPT0168830006 203027390049_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 662d586b-4848-4a48-aa5c-e7f9b2467e3c 2c52349a1922e2ff287a3d3e85c97bb7 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.miRNA-Seq.S10_L001_R1.T C3N-02188 GBM miRNA-Seq tumor CPT0168830009 181119_UNC31-K00269_0165_AH27WCBBXY_CATGGC_S10_L001_R1_001.unaln.bam 204819171 BAM S10_L001_R1 submitted_unaligned CPTAC3 0f3c49cf-fa85-4c4b-8d12-496f4f006dde c67b2be181ceaa9ca667989ce996941c {"aliquot_tag": "ALQ_28134c77", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.miRNA-Seq.T.hg38 C3N-02188 GBM miRNA-Seq tumor CPT0168830009 27e394cc-830b-4c41-8db6-c312ee6e40e0_mirnaseq_gdc_realn.bam 227040901 BAM harmonized CPTAC3 b84a4564-09bc-4005-b71b-1315a55c0a28 358180817b58cb8d5989e415a6176821 {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.RNA-Seq.chimeric.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.chimeric.gdc_realn.bam 36652642 BAM chimeric harmonized CPTAC3 262e7a3b-afcb-446c-b4b6-30cdf471a6d6 98c196148943dc663a578e8836dba64d {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.RNA-Seq.genomic.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.genomic.gdc_realn.bam 10342663344 BAM genomic harmonized CPTAC3 884a30fd-a2d0-4ef3-a0d3-3f82c67f68ad c97ce21a9d01240f0b21a6a8556ce7ef {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.RNA-Seq.S11_L003_R1.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4872445125 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 17b19efd-d99c-4431-8975-392be567d955 9d2801672dbdbfe292bc098e3354073c {"aliquot_tag": "ALQ_28134c77", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.RNA-Seq.S11_L003_R2.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 5271764250 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 9cec104e-e480-4804-a01e-4b3aa2e3b147 8859cf3be99c89e5266aa840c3115789 {"aliquot_tag": "ALQ_28134c77", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.RNA-Seq.transcriptome.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.transcriptome.gdc_realn.bam 14177712757 BAM transcriptome harmonized CPTAC3 2e768ccd-1c3f-4618-8a69-8edfb39f0888 7aa6aecdba5b8da1c3c5410d2934346a {"aliquot_tag": "ALQ_28134c77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.scRNA-Seq.S4_L004_R1.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R1_001.fastq.gz 7649283315 FASTQ S4_L004_R1 submitted_unaligned CPTAC3 d98e9606-3a55-41ce-a742-013daebff0da 29f2ede89bb12353aea6ac941037099b {"aliquot_tag": "ALQ_4fb9018b", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.scRNA-Seq.S4_L004_R2.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R2_001.fastq.gz 18359540278 FASTQ S4_L004_R2 submitted_unaligned CPTAC3 60112146-2f56-4df0-ad7e-c8767a6b1e17 3f7c8199ffa5f7cf362f611be42a30ae {"aliquot_tag": "ALQ_4fb9018b", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.scRNA-Seq.T.hg38 C3N-02188 GBM scRNA-Seq tumor CPT0168830014 possorted_genome_bam.bam 22969152976 BAM harmonized CPTAC3 a8bb406b-e9be-468c-bd0b-511c327fcc6c d7b3899e426bbb32cab57df17496ed18 {"aliquot_tag": "ALQ_4fb9018b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.WGS.N C3N-02188 GBM WGS blood_normal CPT0168870002 CPT0168870002.WholeGenome.RP-1303.bam 67438684582 BAM submitted_aligned CPTAC3 e7fae748-9aad-44b8-a676-87f91c3812be 4d310f44d7e587f6706f8d68be9dde0d {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02188.WGS.N.hg38 C3N-02188 GBM WGS blood_normal CPT0168870002 ea611a56-b305-4dcc-9d4b-620f7ff6410a_wgs_gdc_realn.bam 99011112123 BAM harmonized CPTAC3 462ec60f-d9e1-4cca-91e6-6146d9e12243 885082e5643d4b0fd2febc01cb7b51e3 {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02188.WGS.T C3N-02188 GBM WGS tumor CPT0168830006 CPT0168830006.WholeGenome.RP-1303.bam 59728142886 BAM submitted_aligned CPTAC3 e9940759-3543-4d50-ab47-566af6b808dd a47920aed823e5cdd8446d2388c011d3 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.WGS.T.hg38 C3N-02188 GBM WGS tumor CPT0168830006 2754920b-81c5-4087-8d0a-3d4142cff7c4_wgs_gdc_realn.bam 87025309564 BAM harmonized CPTAC3 b03c3510-17f5-4b92-b8eb-fd72099e47d0 5bb13a8abd8c63db52add8b3673059ea {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.WXS.N C3N-02188 GBM WXS blood_normal CPT0168870002 CPT0168870002.WholeExome.RP-1303.bam 30506934611 BAM submitted_aligned CPTAC3 d30a7e09-a1b6-425d-b9a6-314632d349d4 61ba27190eac786898ca89cc3400ca0e {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02188.WXS.N.hg38 C3N-02188 GBM WXS blood_normal CPT0168870002 ea611a56-b305-4dcc-9d4b-620f7ff6410a_wxs_gdc_realn.bam 40948164131 BAM harmonized CPTAC3 f77f167d-8369-4d86-98af-5ffe055d2236 bc3e46f8a6f5496c0543a484201338a6 {"aliquot_tag": "ALQ_4a41333f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02188.WXS.T C3N-02188 GBM WXS tumor CPT0168830006 CPT0168830006.WholeExome.RP-1303.bam 22950364158 BAM submitted_aligned CPTAC3 10ef9f85-d29f-47e6-8c2f-12aa103ea858 43156d0ef5e6dd70a0fbb007f9c9ea60 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02188.WXS.T.hg38 C3N-02188 GBM WXS tumor CPT0168830006 2754920b-81c5-4087-8d0a-3d4142cff7c4_wxs_gdc_realn.bam 30804887938 BAM harmonized CPTAC3 7578da27-5180-454f-9784-1a3f2c3bcde4 5f3b6adf5a2d9382a55e3589a57053d3 {"aliquot_tag": "ALQ_b8ac51e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.MethArray.Green.T C3N-02190 GBM Methylation_Array tumor CPT0205450007 203220070151_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5ff01b53-1c33-42fa-9350-fb51aea4f9a4 0ae74f887d3d86600a38b9acb461141b {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.MethArray.Red.T C3N-02190 GBM Methylation_Array tumor CPT0205450007 203220070151_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 fccc5f0d-df40-4a3b-9ae9-f8b249f6e492 295eb1300b15b7fdc7807a08c0d4dd55 {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.miRNA-Seq.S11_L007_R1.T C3N-02190 GBM miRNA-Seq tumor CPT0205450010 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L007_R1_001.unaln.bam 296382712 BAM S11_L007_R1 submitted_unaligned CPTAC3 99586c53-31e3-43b7-8f80-d85e00176ca7 b3bdfa4a4989bd9386110f8b77b54e2f {"aliquot_tag": "ALQ_2e63a4cb", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.miRNA-Seq.T.hg38 C3N-02190 GBM miRNA-Seq tumor CPT0205450010 552cc1f8-5fa6-42b9-86e2-f175ecb1aac7_mirnaseq_gdc_realn.bam 330048229 BAM harmonized CPTAC3 dcd3a301-0a39-4348-9017-393aa8ff2652 e94f89c481d229477bf5f49d1225a85c {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.RNA-Seq.chimeric.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.chimeric.gdc_realn.bam 42747058 BAM chimeric harmonized CPTAC3 fe7b1fb5-9713-4a4e-9c7a-387c6ed1118b 97b335a807fbbfeab2a115b2c21ed744 {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.RNA-Seq.genomic.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.genomic.gdc_realn.bam 9558799532 BAM genomic harmonized CPTAC3 9771cda1-da1f-40d9-bc33-c59012550a36 23c18055db129a561ba76b491c697124 {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.RNA-Seq.S14_L004_R1.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R1_001.fastq.gz 4577241175 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 dff391bb-5ef5-4fe5-b902-a66f7d43af89 c27f8cadc1bfb5c0bb5afb6dd587793f {"aliquot_tag": "ALQ_2e63a4cb", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.RNA-Seq.S14_L004_R2.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R2_001.fastq.gz 4780517006 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 bf451c95-8a88-4e2c-bd89-2c4911a90a90 cd58234df9468539d384b40e6ea55133 {"aliquot_tag": "ALQ_2e63a4cb", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.RNA-Seq.transcriptome.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.transcriptome.gdc_realn.bam 14757680771 BAM transcriptome harmonized CPTAC3 6507a9ec-86f7-4172-80f1-a2a88d0cfa8c 3c2391038e2e4ba32aef6174df047afc {"aliquot_tag": "ALQ_2e63a4cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.scRNA-Seq.S1_L004_R1.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R1_001.fastq.gz 8605688275 FASTQ S1_L004_R1 submitted_unaligned CPTAC3 a0b8f93d-3c1f-4234-88b7-aa9605fba941 053c7569023b9598d13267480e32b4c9 {"aliquot_tag": "ALQ_5e095044", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.scRNA-Seq.S1_L004_R2.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R2_001.fastq.gz 18925261781 FASTQ S1_L004_R2 submitted_unaligned CPTAC3 d7f6adc2-afc3-47e3-83fb-7110e2e60ef9 06e52eaf9cc7dda9db182ed74b5a6ea5 {"aliquot_tag": "ALQ_5e095044", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.scRNA-Seq.T.hg38 C3N-02190 GBM scRNA-Seq tumor CPT0205450015 possorted_genome_bam.bam 21809890384 BAM harmonized CPTAC3 c720f1da-f739-44f0-b577-073daf6f6ba5 3359a3a1d1035c7f8ee3c1b630a9aec2 {"aliquot_tag": "ALQ_5e095044", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.WGS.N C3N-02190 GBM WGS blood_normal CPT0205510002 CPT0205510002.WholeGenome.RP-1303.bam 56523101733 BAM submitted_aligned CPTAC3 69044463-d458-4dfd-8fa5-77ace6a4da7e 60f6c0aebba70eb143278fdcb1bfc4b0 {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02190.WGS.N.hg38 C3N-02190 GBM WGS blood_normal CPT0205510002 a6e52347-ea57-438b-963b-26d708da3ad1_wgs_gdc_realn.bam 82619204743 BAM harmonized CPTAC3 1907eba9-edc5-45eb-bf07-21627298553b b43ac86a2d62537f73efcf7fd586649b {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02190.WGS.T C3N-02190 GBM WGS tumor CPT0205450007 CPT0205450007.WholeGenome.RP-1303.bam 65614611212 BAM submitted_aligned CPTAC3 5e3bdebf-990c-4e85-aea5-c07ddfc1b687 6f55c233c13ac83a24ee190474ee82d5 {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.WGS.T.hg38 C3N-02190 GBM WGS tumor CPT0205450007 463480cc-d006-46a5-9812-f56652c2c3f0_wgs_gdc_realn.bam 95574824932 BAM harmonized CPTAC3 672fe01c-68fd-470b-b4bb-5ec74c780139 74a0d342b38cd12476a5ccdb4f9230eb {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.WXS.N C3N-02190 GBM WXS blood_normal CPT0205510002 CPT0205510002.WholeExome.RP-1303.bam 30522709409 BAM submitted_aligned CPTAC3 c7f9299f-00d0-4ae3-93e7-0e6545e0cbfc e20c1640e305ff90db073ed3f5427bf6 {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02190.WXS.N.hg38 C3N-02190 GBM WXS blood_normal CPT0205510002 a6e52347-ea57-438b-963b-26d708da3ad1_wxs_gdc_realn.bam 42435431713 BAM harmonized CPTAC3 5421f53d-3c45-4318-a4e0-958472e6f850 8c3337ed8b06371c4a5f27f84a43be30 {"aliquot_tag": "ALQ_e7aa81c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02190.WXS.T C3N-02190 GBM WXS tumor CPT0205450007 CPT0205450007.WholeExome.RP-1303.bam 23235623574 BAM submitted_aligned CPTAC3 799669f9-8030-4bca-9067-e18956275328 cb1ab5aaceaa0b5bf4a7ae716ef2afd6 {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02190.WXS.T.hg38 C3N-02190 GBM WXS tumor CPT0205450007 463480cc-d006-46a5-9812-f56652c2c3f0_wxs_gdc_realn.bam 32013498335 BAM harmonized CPTAC3 926ba337-5ae7-4ea8-8afb-8736f6183173 2cdcf9f020883755c7ce3c5b49ad08ad {"aliquot_tag": "ALQ_a91c0029", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.MethArray.Green.T C3N-02192 LUAD Methylation_Array tumor CPT0209620006 203561620087_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2d88c25c-1430-4dbf-b9e7-7b1cb86f523b fdb918ff3a1d8abb08864f957f4712d4 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.MethArray.Red.T C3N-02192 LUAD Methylation_Array tumor CPT0209620006 203561620087_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 df9fdf9b-40eb-4e15-b237-d0b118bc1a43 44189c10560ba2398c82bad164b917d4 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.miRNA-Seq.A.hg38 C3N-02192 LUAD miRNA-Seq tissue_normal CPT0209910006 0f763042-4829-4b23-8d32-7e6aa0e78e97_mirnaseq_gdc_realn.bam 159450612 BAM harmonized CPTAC3 181d4717-8d87-49e5-be47-43856f66830e 913f6e6a8c2f022fa44609ac15202ae7 {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02192.miRNA-Seq.S27_L006_R1.A C3N-02192 LUAD miRNA-Seq tissue_normal CPT0209910006 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGGCG_S27_L006_R1_001.unaln.bam 138789821 BAM S27_L006_R1 submitted_unaligned CPTAC3 34ff171e-0940-41b6-9492-818bf4b26a84 bbcaeb8287df9ee1e46ce4332400080c {"aliquot_tag": "ALQ_50a5efd5", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02192.miRNA-Seq.S8_L007_R1.T C3N-02192 LUAD miRNA-Seq tumor CPT0209620009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTTGTA_S8_L007_R1_001.unaln.bam 185276226 BAM S8_L007_R1 submitted_unaligned CPTAC3 18891f5b-06a0-4ab2-8042-89e811e9be26 478d47a5ad636e619f999e732e02284a {"aliquot_tag": "ALQ_76ec3a41", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.miRNA-Seq.T.hg38 C3N-02192 LUAD miRNA-Seq tumor CPT0209620009 9a8c61d5-20a8-48e9-aa92-06ba2a7c595a_mirnaseq_gdc_realn.bam 201692419 BAM harmonized CPTAC3 bcd68a12-8e55-4ff3-88a1-922581fc24b5 9fd9df9e6d6149223f791fd810b4452b {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.RNA-Seq.chimeric.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.chimeric.gdc_realn.bam 279454314 BAM chimeric harmonized CPTAC3 a68fdb9e-93cc-4c5b-95ac-31096fb7b2da 3d36feec2d69dbffb28402052ab3fb17 {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02192.RNA-Seq.chimeric.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.chimeric.gdc_realn.bam 30039520 BAM chimeric harmonized CPTAC3 f36221b7-ff39-4068-931e-704ececa93e7 767d4c64b64c0e9e77e32e640db1bb11 {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.RNA-Seq.genomic.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.genomic.gdc_realn.bam 8634090414 BAM genomic harmonized CPTAC3 7b2e23af-e87e-4278-a783-41dc7d1b6e38 c6f8fa0e069a5c7740ee0256d6b69872 {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02192.RNA-Seq.genomic.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.genomic.gdc_realn.bam 10207929457 BAM genomic harmonized CPTAC3 5622461e-3afd-40aa-8d77-0083726b63ff c443ec7aac540bee82d5c17cf41931d0 {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.RNA-Seq.S20_L005_R1.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R1_001.fastq.gz 3673464858 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 9de0693d-f6be-4754-bb22-d139c02c5f7c 78071a5702a67a7892017f3e8bec1228 {"aliquot_tag": "ALQ_50a5efd5", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02192.RNA-Seq.S20_L005_R2.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R2_001.fastq.gz 3766184346 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 5d604433-ecb0-4567-a1d1-8039fc933014 b31a5020e3cc591eaf8bd896a9901037 {"aliquot_tag": "ALQ_50a5efd5", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02192.RNA-Seq.S2_L001_R1.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R1_001.fastq.gz 3863188115 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 4a5ab6a1-31e3-4570-965d-1ebbea599c26 f8e511aefebc51aacdc0a5d84a29db21 {"aliquot_tag": "ALQ_76ec3a41", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.RNA-Seq.S2_L001_R2.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R2_001.fastq.gz 4423984869 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 697e98cc-45ff-46b6-ac3f-acd4dc40e15d 367563c059e73ce2d981ae0b300a6202 {"aliquot_tag": "ALQ_76ec3a41", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.RNA-Seq.transcriptome.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.transcriptome.gdc_realn.bam 7018897365 BAM transcriptome harmonized CPTAC3 b9e931ea-e70b-495c-ac48-30d90af8a748 2fe83a6dca1d6c2bad9cce07f6891cfa {"aliquot_tag": "ALQ_50a5efd5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02192.RNA-Seq.transcriptome.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.transcriptome.gdc_realn.bam 9096046820 BAM transcriptome harmonized CPTAC3 bea2df46-a452-4d27-b8ce-e48baf12afca e890b56b9b0a0055435527fe56b4e115 {"aliquot_tag": "ALQ_76ec3a41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.WGS.N C3N-02192 LUAD WGS blood_normal CPT0209970002 CPT0209970002.WholeGenome.RP-1303.bam 78375975724 BAM submitted_aligned CPTAC3 6ac9beba-31e1-4cc7-b8c0-3e4be0c016ce 7130bec14302f399cf22378c1ed28182 {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02192.WGS.N.hg38 C3N-02192 LUAD WGS blood_normal CPT0209970002 064c040e-c959-4259-9428-eb9879dc555d_wgs_gdc_realn.bam 114502455639 BAM harmonized CPTAC3 5b51df68-1646-457d-ae4e-c12735f71a5e 3e9e427ef59e4ee27f21857217535c73 {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02192.WGS.T C3N-02192 LUAD WGS tumor CPT0209620006 CPT0209620006.WholeGenome.RP-1303.bam 70862351315 BAM submitted_aligned CPTAC3 cad1fa8e-20a6-498e-8861-f8593fbddb84 2b96f6f1b84b20328db2d70a7c6c5286 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.WGS.T.hg38 C3N-02192 LUAD WGS tumor CPT0209620006 baf3c92a-ffa3-44b4-812a-6c90f5d5dcd7_wgs_gdc_realn.bam 104343694598 BAM harmonized CPTAC3 eb317ac8-699f-421f-bf9d-c1a689e7628a bbdf43951ff9fa695132b1020f301787 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.WXS.N C3N-02192 LUAD WXS blood_normal CPT0209970002 CPT0209970002.WholeExome.RP-1303.bam 26195976727 BAM submitted_aligned CPTAC3 fe62549d-c44e-4610-aac9-cf4893601558 e7d94a05ca59d8eb1ddf6543063a9fbe {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02192.WXS.N.hg38 C3N-02192 LUAD WXS blood_normal CPT0209970002 064c040e-c959-4259-9428-eb9879dc555d_wxs_gdc_realn.bam 36321256630 BAM harmonized CPTAC3 f4e025d4-04a1-4733-9abf-156fa4e2e3ff 5ec6fff1ee2eccfbd15a03ee45f8e3d6 {"aliquot_tag": "ALQ_d888de6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02192.WXS.T C3N-02192 LUAD WXS tumor CPT0209620006 CPT0209620006.WholeExome.RP-1303.bam 21046952060 BAM submitted_aligned CPTAC3 484541e2-fc58-427f-812c-42bebbad1696 0aa33e7c53a041dc8b22ece2eee84b7a {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02192.WXS.T.hg38 C3N-02192 LUAD WXS tumor CPT0209620006 baf3c92a-ffa3-44b4-812a-6c90f5d5dcd7_wxs_gdc_realn.bam 28975367558 BAM harmonized CPTAC3 ee2cf3e8-d7fb-4f04-bc72-a96f16a55765 f9e1bb46c774ffd16e3230d85277b1b3 {"aliquot_tag": "ALQ_e65327d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.MethArray.Green.T C3N-02193 LUAD Methylation_Array tumor CPT0210110006 203561620049_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d8a011ee-c1bf-401c-a04c-10070e22dd97 d70a7673406c51ae2859fe958e544919 {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.MethArray.Red.T C3N-02193 LUAD Methylation_Array tumor CPT0210110006 203561620049_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 e7a2aa3c-9080-4442-a86b-95b84aa1f5ff 2e1ef7f9f28187f5506feeaf4c83161c {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.miRNA-Seq.A.hg38 C3N-02193 LUAD miRNA-Seq tissue_normal CPT0210140007 2adeb77b-7943-42da-9099-9f81a1ce0223_mirnaseq_gdc_realn.bam 213070576 BAM harmonized CPTAC3 952b980d-7a93-4067-9a04-6156b3641813 b8a3e403c3bdf31dd7778accc5a39b45 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02193.miRNA-Seq.S28_L006_R1.A C3N-02193 LUAD miRNA-Seq tissue_normal CPT0210140007 190722_UNC31-K00269_0234_AH7VGTBBXY_CATGGC_S28_L006_R1_001.unaln.bam 192792797 BAM S28_L006_R1 submitted_unaligned CPTAC3 48351abf-2056-4eea-a94b-1665b8c7968e d4a19aced84c367673a8ebb982b517b7 {"aliquot_tag": "ALQ_5a239713", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02193.miRNA-Seq.S9_L007_R1.T C3N-02193 LUAD miRNA-Seq tumor CPT0210110009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTCAA_S9_L007_R1_001.unaln.bam 213163763 BAM S9_L007_R1 submitted_unaligned CPTAC3 0d7ed8da-fa16-4ff9-b427-6c9c1d4f2700 4f9365e8a11f42676bfa0193268c264b {"aliquot_tag": "ALQ_757b3564", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.miRNA-Seq.T.hg38 C3N-02193 LUAD miRNA-Seq tumor CPT0210110009 cb21ba0e-ce4e-4ac7-bedd-683fc0453bfc_mirnaseq_gdc_realn.bam 238797070 BAM harmonized CPTAC3 977ad99b-f743-42ce-b33e-902ecd18ac7f ab19037a4420714d2e1513bd033efbe8 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.RNA-Seq.chimeric.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.chimeric.gdc_realn.bam 29326623 BAM chimeric harmonized CPTAC3 ef5209e3-9356-423a-bac2-84b9f605a674 44984c4cf2cdefb1c6ed3ee58f48e025 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02193.RNA-Seq.chimeric.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.chimeric.gdc_realn.bam 29344300 BAM chimeric harmonized CPTAC3 3b97cf53-079c-43c3-960a-a76933b1c235 200bacf87c55a9ff6d5f8e1f612a4d28 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.RNA-Seq.genomic.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.genomic.gdc_realn.bam 10150552497 BAM genomic harmonized CPTAC3 f492526d-02b1-4cbb-a269-f7a83ef5f031 0e64e918ae77d350def218f87b6b12d3 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02193.RNA-Seq.genomic.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.genomic.gdc_realn.bam 10392541644 BAM genomic harmonized CPTAC3 5248ff7c-548f-4ae4-a26f-3d0f49c47add 392e12c4b939c5044477caaf32dd4bf2 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.RNA-Seq.S1_L001_R1.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R1_001.fastq.gz 3812760463 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 9ce56cba-2011-4c22-a107-4315aebb72b6 508828dd6dcfe9aefd255d49bb78ea14 {"aliquot_tag": "ALQ_757b3564", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.RNA-Seq.S1_L001_R2.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R2_001.fastq.gz 4425314745 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 086f5206-32a4-4143-9af4-cc87f91ac4e4 fac54a70906d0e774566c3db291ecc87 {"aliquot_tag": "ALQ_757b3564", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.RNA-Seq.S3_L001_R1.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R1_001.fastq.gz 3891145669 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 08dfb55d-d261-4535-93e4-39823d558f2c 424b17f38e0ddd165ea5b38d6c979ec5 {"aliquot_tag": "ALQ_5a239713", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02193.RNA-Seq.S3_L001_R2.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R2_001.fastq.gz 4376746336 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 a8b71541-e1fc-429d-9307-c712076d2694 741508f2fc4307df3d88f831e96e969a {"aliquot_tag": "ALQ_5a239713", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02193.RNA-Seq.transcriptome.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.transcriptome.gdc_realn.bam 8911215835 BAM transcriptome harmonized CPTAC3 5d8df838-3753-4656-8faa-e2cd78454ef0 89c599d872af50f8e485f0bd91a49304 {"aliquot_tag": "ALQ_5a239713", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02193.RNA-Seq.transcriptome.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.transcriptome.gdc_realn.bam 8377524110 BAM transcriptome harmonized CPTAC3 135ec554-b80a-45c0-bf21-77c40e816aff f4ba3b1d8139c1bc9a4919fe1ceb2b58 {"aliquot_tag": "ALQ_757b3564", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.WGS.N C3N-02193 LUAD WGS blood_normal CPT0210200002 CPT0210200002.WholeGenome.RP-1303.bam 71263705664 BAM submitted_aligned CPTAC3 409fde52-52fd-49be-813b-eb86f041dd2e aa8ad7b6c9f06a7c7c98358f147e4f1e {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02193.WGS.N.hg38 C3N-02193 LUAD WGS blood_normal CPT0210200002 3a7962e7-ea07-4bfa-b260-9b9ea7a99801_wgs_gdc_realn.bam 102902097453 BAM harmonized CPTAC3 39e4f98c-3ef6-4a53-bd37-a85336483013 eba54fd283acb77e0da830be021b1eb5 {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02193.WGS.T C3N-02193 LUAD WGS tumor CPT0210110006 CPT0210110006.WholeGenome.RP-1303.bam 68530773458 BAM submitted_aligned CPTAC3 642a4fed-9915-4b28-b56c-25e69a59401e 603f00c6f97f122ec64a06241dfe01df {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.WGS.T.hg38 C3N-02193 LUAD WGS tumor CPT0210110006 d37563b0-b453-4599-9424-36251ed9929f_wgs_gdc_realn.bam 98324066148 BAM harmonized CPTAC3 e1c17851-fef0-41df-bf67-6f2b96cda8f8 fd4d67a8f1054390c3fb3b5f5c6e2a30 {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.WXS.N C3N-02193 LUAD WXS blood_normal CPT0210200002 CPT0210200002.WholeExome.RP-1303.bam 24693268294 BAM submitted_aligned CPTAC3 ac840537-1625-4682-9650-3be1b0047195 585cd50388630a208f86360aed5f1647 {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02193.WXS.N.hg38 C3N-02193 LUAD WXS blood_normal CPT0210200002 3a7962e7-ea07-4bfa-b260-9b9ea7a99801_wxs_gdc_realn.bam 33920856102 BAM harmonized CPTAC3 6bd614a4-31a1-45e4-969c-ff3120d83d75 761e34e6484276e5be37145c1965cc95 {"aliquot_tag": "ALQ_595db7f2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02193.WXS.T C3N-02193 LUAD WXS tumor CPT0210110006 CPT0210110006.WholeExome.RP-1303.bam 34228571055 BAM submitted_aligned CPTAC3 0fc839f1-dbb1-444c-9d00-134464ac8e92 856192fc43e2deab7e006b14c3f98793 {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02193.WXS.T.hg38 C3N-02193 LUAD WXS tumor CPT0210110006 d37563b0-b453-4599-9424-36251ed9929f_wxs_gdc_realn.bam 47688182304 BAM harmonized CPTAC3 74159150-12d1-4c0a-8d4d-3f2fb715967d 4103d44bd86f512304601cc3cf4d7a6f {"aliquot_tag": "ALQ_e5c428f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.MethArray.Green.A C3N-02224 CCRCC Methylation_Array tissue_normal CPT0214150006 204930630078_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 629dce6e-15f5-4f34-b654-5ae404072eb5 8c3f752fd2d46a58576ff0df79b76191 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.MethArray.Green.T C3N-02224 CCRCC Methylation_Array tumor CPT0214120006 203219670054_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9df9438b-2081-46f5-bc76-adf4715522bc 7a0778024e080aa16d9158efd21a2ba3 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.MethArray.Red.A C3N-02224 CCRCC Methylation_Array tissue_normal CPT0214150006 204930630078_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 d03ec1d0-3613-4109-9291-3644fd856702 5b2295eec6525926f863ef4e14c36001 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.MethArray.Red.T C3N-02224 CCRCC Methylation_Array tumor CPT0214120006 203219670054_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 8c38a980-4711-49d1-aac4-05130987a2a5 e256bac79399c95bb467411ed4d8d304 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.miRNA-Seq.A.hg38 C3N-02224 CCRCC miRNA-Seq tissue_normal CPT0214150009 827eeea5-ecc1-42b4-a761-846428719934_mirnaseq_gdc_realn.bam 215086911 BAM harmonized CPTAC3 366c3dd4-df35-42f1-bf9d-79eba8b873e5 96963c86fafbd90a3b1b74918cff68d7 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.miRNA-Seq.S20_L001_R1.T C3N-02224 CCRCC miRNA-Seq tumor CPT0214120009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACGAT_S20_L001_R1_001.unaln.bam 224268926 BAM S20_L001_R1 submitted_unaligned CPTAC3 74606d63-cdeb-4c86-a021-8b59d5fdb15b 62c9d1ca36e064c42abb4cf7adb79a8b {"aliquot_tag": "ALQ_c6946ba7", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.miRNA-Seq.S25_L004_R1.A C3N-02224 CCRCC miRNA-Seq tissue_normal CPT0214150009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATCACG_S25_L004_R1_001.unaln.bam 194486137 BAM S25_L004_R1 submitted_unaligned CPTAC3 0fe7d5b2-55e5-444f-ac8a-198722fbc5f6 535aaf21ec9db525e93e075acd9ba41f {"aliquot_tag": "ALQ_74b4b7b7", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.miRNA-Seq.T.hg38 C3N-02224 CCRCC miRNA-Seq tumor CPT0214120009 89c28432-af9a-4532-ae6f-53235878fbe6_mirnaseq_gdc_realn.bam 254935706 BAM harmonized CPTAC3 4eace275-605d-46fe-a927-579ece9c3702 1a1b2c7e2c3983221e8239cd4166d65f {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.RNA-Seq.chimeric.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.chimeric.gdc_realn.bam 89635040 BAM chimeric harmonized CPTAC3 7446b72e-a103-4e54-ad26-8dd082c57cde 120cd8f047cabe2888d8f116fdbb7071 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.RNA-Seq.chimeric.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.chimeric.gdc_realn.bam 292527445 BAM chimeric harmonized CPTAC3 994d2d4d-b5df-42dc-a851-6adf610ece41 a58c39e7e7e2b4dcdc143de1801f7835 {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.RNA-Seq.genomic.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.genomic.gdc_realn.bam 8057378908 BAM genomic harmonized CPTAC3 e02d9628-b76f-49c5-92e8-26035bea98f5 ed0ae046ee27ff2ec294ee73c12f4060 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.RNA-Seq.genomic.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.genomic.gdc_realn.bam 6560070173 BAM genomic harmonized CPTAC3 bba9163c-0186-46f4-ad25-33a52943c26b 45189d29452e6a076e68ff7ee1316008 {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.RNA-Seq.S21_L006_R1.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3023425861 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 f81d9ea9-72a8-419a-8036-be08a8c883cf 2cc866af6d6da3ba4b323eb52e07b08a {"aliquot_tag": "ALQ_c6946ba7", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.RNA-Seq.S21_L006_R2.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3278043342 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 d3f5e52b-6dce-4796-bf26-e8bcf5489cd4 9f38bfdf5549c2757bdfb41b00fa0ee5 {"aliquot_tag": "ALQ_c6946ba7", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.RNA-Seq.S21_L007_R1.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R1_001.fastq.gz 4055737113 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 a6afa7e4-48f2-4ea7-999a-415793a08171 be27792928483f42883becfff8609c0f {"aliquot_tag": "ALQ_74b4b7b7", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.RNA-Seq.S21_L007_R2.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R2_001.fastq.gz 3715042125 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 ea76370a-5863-4f4c-bfba-7a6be029d5d6 b74e845b5b79be92c9b14aefbf486687 {"aliquot_tag": "ALQ_74b4b7b7", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.RNA-Seq.transcriptome.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.transcriptome.gdc_realn.bam 8496117420 BAM transcriptome harmonized CPTAC3 ec1012d8-7ccc-4e8d-9f19-68e6c14025d6 e49baf0702ded758d1b4688e82954d33 {"aliquot_tag": "ALQ_74b4b7b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.RNA-Seq.transcriptome.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.transcriptome.gdc_realn.bam 7739280853 BAM transcriptome harmonized CPTAC3 c40c11cb-e03b-4f04-aac8-42a1722584ca 1ec287bd4259666a04e71926a495ba26 {"aliquot_tag": "ALQ_c6946ba7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.WGS.A C3N-02224 CCRCC WGS tissue_normal CPT0214150006 CPT0214150006.WholeGenome.RP-1303.bam 64303069433 BAM submitted_aligned CPTAC3 b5cc2df9-3572-40be-96f2-7e4e50f0a9d6 1fc491fef3ddf45ab45684f27affff1f {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.WGS.A.hg38 C3N-02224 CCRCC WGS tissue_normal CPT0214150006 8523baa9-3cf1-453a-bcf5-1e010748eccc_wgs_gdc_realn.bam 95656802351 BAM harmonized CPTAC3 ea2742d4-339b-4b7a-8f17-bfd9d77750fd 4db1139943bc371f4249d399a2a70857 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.WGS.N C3N-02224 CCRCC WGS blood_normal CPT0214230002 CPT0214230002.WholeGenome.RP-1303.bam 52756668379 BAM submitted_aligned CPTAC3 6d565095-88ea-41da-97c4-a09f9a8d0810 e1c0435d0fe11f6b80b521e994744b0a {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02224.WGS.N.hg38 C3N-02224 CCRCC WGS blood_normal CPT0214230002 c75a39b6-5988-4db4-adfe-5a1dacaa1a07_wgs_gdc_realn.bam 76796159738 BAM harmonized CPTAC3 2b72f57e-2302-4435-b23c-253fd248f14d e0bc7f64f1f37be55e63ba63013370c1 {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02224.WGS.T C3N-02224 CCRCC WGS tumor CPT0214120006 CPT0214120006.WholeGenome.RP-1303.bam 57010431744 BAM submitted_aligned CPTAC3 4a5a91ba-68d1-4b90-93c5-51e8a792a7b5 fea14dbde712af03a033f2a89a591d55 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.WGS.T.hg38 C3N-02224 CCRCC WGS tumor CPT0214120006 1744f1ce-fd85-4d7f-854b-f733a71592ab_wgs_gdc_realn.bam 83253338051 BAM harmonized CPTAC3 79b54704-9c45-4bc6-89b4-d3b31a54133c 4d43febf239fdc75453ee7779e9441c4 {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.WXS.A C3N-02224 CCRCC WXS tissue_normal CPT0214150006 CPT0214150006.WholeExome.RP-1303.bam 24243377468 BAM submitted_aligned CPTAC3 2bc655e7-2bee-4c56-926b-cef197826e9a ade7ce59b13aab3f6fda8e9fc74868d8 {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.WXS.A.hg38 C3N-02224 CCRCC WXS tissue_normal CPT0214150006 8523baa9-3cf1-453a-bcf5-1e010748eccc_wxs_gdc_realn.bam 33231141613 BAM harmonized CPTAC3 5c3daf61-98ac-4b89-ac96-4a65bf4b6bcd 12dea12714e17f49420d0f7a2e65074d {"aliquot_tag": "ALQ_e40baa26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02224.WXS.N C3N-02224 CCRCC WXS blood_normal CPT0214230002 CPT0214230002.WholeExome.RP-1303.bam 25495410257 BAM submitted_aligned CPTAC3 f73b998a-504c-46a8-a502-6a413cd1bca3 aca28a0409968de4da997e5e5725e2a9 {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02224.WXS.N.hg38 C3N-02224 CCRCC WXS blood_normal CPT0214230002 c75a39b6-5988-4db4-adfe-5a1dacaa1a07_wxs_gdc_realn.bam 34908057913 BAM harmonized CPTAC3 c31e30fb-7dac-47a3-ad72-cc35064fcb96 06cec720ef0797cb5846dd0e1f2862ed {"aliquot_tag": "ALQ_eab2e931", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02224.WXS.T C3N-02224 CCRCC WXS tumor CPT0214120006 CPT0214120006.WholeExome.RP-1303.bam 28578851600 BAM submitted_aligned CPTAC3 e2995981-20e9-4fbe-8093-b6cd3cd4e3c1 2537658cf2785b84d11b5c8273ed1dee {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02224.WXS.T.hg38 C3N-02224 CCRCC WXS tumor CPT0214120006 1744f1ce-fd85-4d7f-854b-f733a71592ab_wxs_gdc_realn.bam 38503708892 BAM harmonized CPTAC3 748636a3-d460-4a82-b749-5cc94c176166 b29196e3453b64a675968dde6a4bb82c {"aliquot_tag": "ALQ_562b7636", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.MethArray.Green.A C3N-02230 LUAD Methylation_Array tissue_normal CPT0214330006 203219720211_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f0e6e51f-4be4-4f6b-a1b9-712e0e512c26 f75dcc9b1d54edf3f611a7bc822db2f9 {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.MethArray.Green.T C3N-02230 LUAD Methylation_Array tumor CPT0214290009 203273200155_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 735951d0-78e6-4869-9a41-2d102736f168 0c22767a5025f5eed063d211fe0c2b90 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.MethArray.Red.A C3N-02230 LUAD Methylation_Array tissue_normal CPT0214330006 203219720211_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 bac50850-c0d3-44bc-a4c5-291535ff5fa1 9364897facfeb6232003474732a21465 {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.MethArray.Red.T C3N-02230 LUAD Methylation_Array tumor CPT0214290009 203273200155_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 d1b0b794-85b5-4da5-8d19-4dca12a2f10e e03fdc9e5862e1fcde4ac84e9119845c {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.miRNA-Seq.A.hg38 C3N-02230 LUAD miRNA-Seq tissue_normal CPT0214330009 dc3aa98b-bd0c-4524-90c0-c821070aebd1_mirnaseq_gdc_realn.bam 250456100 BAM harmonized CPTAC3 642de1c3-2f39-4620-9063-17b51b23d6f0 54d4fda4cb9525c5e718da7b9633299e {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.miRNA-Seq.S18_L004_R1.A C3N-02230 LUAD miRNA-Seq tissue_normal CPT0214330009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L004_R1_001.unaln.bam 224389800 BAM S18_L004_R1 submitted_unaligned CPTAC3 811281bb-c138-47b7-b265-1ecf5a70cf2e 8d862ac800e418ea1e3c01d90af26e76 {"aliquot_tag": "ALQ_b63ce31c", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.miRNA-Seq.S30_L007_R1.T C3N-02230 LUAD miRNA-Seq tumor CPT0214290006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L007_R1_001.unaln.bam 232848664 BAM S30_L007_R1 submitted_unaligned CPTAC3 0a5eaeed-6b72-4ca7-b863-a5edc3106578 c61ba5c6ff46de167b52f891a283b369 {"aliquot_tag": "ALQ_a76f3589", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.miRNA-Seq.T.hg38 C3N-02230 LUAD miRNA-Seq tumor CPT0214290006 cd6cc107-a802-4ce3-b883-ea7a662ef16a_mirnaseq_gdc_realn.bam 251480031 BAM harmonized CPTAC3 b84ec850-cee3-450d-8c1c-a245d5d8d733 5f7443b0d636b7a146664601413ec0ed {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.RNA-Seq.chimeric.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.chimeric.gdc_realn.bam 47138486 BAM chimeric harmonized CPTAC3 7849a20f-b265-42c8-9e86-72ff060accdf e8726f6827f185f643fc82d74ad5d02d {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.RNA-Seq.chimeric.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.chimeric.gdc_realn.bam 44352787 BAM chimeric harmonized CPTAC3 77526edc-0905-437a-9cf8-0f4d58418e31 cc7b31b7cd1a8a8fe51f474c824184c3 {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.RNA-Seq.genomic.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.genomic.gdc_realn.bam 7816325706 BAM genomic harmonized CPTAC3 aabe5f02-c8d9-4c44-80a9-3d455135447a 4803bc5d0782b4f78f7e59f2db00d8fd {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.RNA-Seq.genomic.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.genomic.gdc_realn.bam 8473945011 BAM genomic harmonized CPTAC3 9076a0d3-32b6-4cfc-a755-153ebe972b7c 4cc6a661b6c8bbc2b29b4f41fa77538b {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.RNA-Seq.S20_L006_R1.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R1_001.fastq.gz 3583343869 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 5a8ee235-0c16-4ecc-834c-90a3ebdee4f1 a23cfbde57599ff12b5a8dd04b64c860 {"aliquot_tag": "ALQ_a76f3589", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.RNA-Seq.S20_L006_R2.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R2_001.fastq.gz 4025728760 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 ce0bfc02-22b9-40b9-b5d5-76ca5390a92f 4979777d794bc011977011a8c16adedb {"aliquot_tag": "ALQ_a76f3589", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.RNA-Seq.S9_L003_R1.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R1_001.fastq.gz 3545833130 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 fe5e3182-e8d0-4fb4-80de-ccc730cbc497 c93a577c8ea476838482f8e000d2aad8 {"aliquot_tag": "ALQ_b63ce31c", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.RNA-Seq.S9_L003_R2.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R2_001.fastq.gz 3732130630 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 b3d5e8f8-aa21-47aa-95ab-be1bd2b346d2 9f38eb8957d0d6095229367512dd5d1b {"aliquot_tag": "ALQ_b63ce31c", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.RNA-Seq.transcriptome.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.transcriptome.gdc_realn.bam 8801447301 BAM transcriptome harmonized CPTAC3 76622706-ac9a-4424-bed0-850b361a8797 46465ec757001320ae86af5d076294f3 {"aliquot_tag": "ALQ_b63ce31c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.RNA-Seq.transcriptome.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.transcriptome.gdc_realn.bam 8883438383 BAM transcriptome harmonized CPTAC3 e8a5724e-b234-4eba-8b86-77596ea256bf d48fcf7146f011c73efbaa4cb48c3eca {"aliquot_tag": "ALQ_a76f3589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.WGS.N C3N-02230 LUAD WGS blood_normal CPT0214410002 CPT0214410002.WholeGenome.RP-1303.bam 61512559977 BAM submitted_aligned CPTAC3 55f9f52f-abcc-415f-9b30-33a0e5fae374 93831936292e3267cc3db8793aa4cba8 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02230.WGS.N.hg38 C3N-02230 LUAD WGS blood_normal CPT0214410002 0ca57ed0-a023-470f-99a0-c306ca740abc_wgs_gdc_realn.bam 90656504077 BAM harmonized CPTAC3 ddf66698-6201-4fd5-9de4-64ba989609e7 253b3426365aaa7ed9873ae3773aa041 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02230.WGS.T C3N-02230 LUAD WGS tumor CPT0214290009 CPT0214290009.WholeGenome.RP-1303.bam 57204007092 BAM submitted_aligned CPTAC3 cfa52a9d-4acc-4d3a-8b11-4c9cee742382 dd0d34afbdf4cccee6eebcc6dae85337 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.WGS.T.hg38 C3N-02230 LUAD WGS tumor CPT0214290009 00d29d93-0ed6-4160-ac3a-4218412ec190_wgs_gdc_realn.bam 82615723835 BAM harmonized CPTAC3 226f1ce0-3476-4ccb-9a79-4ca61a0e214a a86c37b02eaacfe99db7558e142b7046 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.WXS.A C3N-02230 LUAD WXS tissue_normal CPT0214330006 CPT0214330006.WholeExome.RP-1303.bam 24517733588 BAM submitted_aligned CPTAC3 cc0e6c31-6efb-4ea5-8831-5506323104ab 75612cd30b9c6372a84933f4da2576cb {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.WXS.A.hg38 C3N-02230 LUAD WXS tissue_normal CPT0214330006 0da20a77-7fd6-41a1-beb5-8316b6bbc76a_wxs_gdc_realn.bam 33383897263 BAM harmonized CPTAC3 4763805a-818b-443f-ab8e-b5ec38613000 5a49aec9084a69bc4579e4969d4af2a1 {"aliquot_tag": "ALQ_2683fe8d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02230.WXS.N C3N-02230 LUAD WXS blood_normal CPT0214410002 CPT0214410002.WholeExome.RP-1303.bam 22205821486 BAM submitted_aligned CPTAC3 707feb78-b555-487d-875e-a83c948794bf 2171de9b8ac2b52058597f8647d522a8 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02230.WXS.N.hg38 C3N-02230 LUAD WXS blood_normal CPT0214410002 0ca57ed0-a023-470f-99a0-c306ca740abc_wxs_gdc_realn.bam 30435814411 BAM harmonized CPTAC3 1e1dc983-9275-41fe-9e03-951fb0d1dcfa c19eeacdaddeec79bb0d583018299520 {"aliquot_tag": "ALQ_462b594c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02230.WXS.T C3N-02230 LUAD WXS tumor CPT0214290009 CPT0214290009.WholeExome.RP-1303.bam 24707924773 BAM submitted_aligned CPTAC3 0e5f3378-504c-49c4-a05f-614386d2ade9 5b370ed4f0677098b1a1c94946f5b7a6 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02230.WXS.T.hg38 C3N-02230 LUAD WXS tumor CPT0214290009 00d29d93-0ed6-4160-ac3a-4218412ec190_wxs_gdc_realn.bam 34299550206 BAM harmonized CPTAC3 8ebdbbd9-2482-4b36-b7f3-6be964775b70 e28d3874c06a00a1e38b4e2862e91074 {"aliquot_tag": "ALQ_37d02818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.MethArray.Green.A C3N-02234 LUAD Methylation_Array tissue_normal CPT0214690006 203273200080_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 922db8f3-7edc-4918-ac5b-ed2b49b0612f 8fab2fc8b91b761e8fec38be8a083b7a {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.MethArray.Green.T C3N-02234 LUAD Methylation_Array tumor CPT0214650009 203219640158_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a0f9a72c-5d23-4716-839a-cbf30618abbd 8d5627925b46d459ce5279c2ec88edbe {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.MethArray.Red.A C3N-02234 LUAD Methylation_Array tissue_normal CPT0214690006 203273200080_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 6e5fc595-837d-45e1-8dd4-9ed01823ed1a 33e35b631702d90dc567f1e556520322 {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.MethArray.Red.T C3N-02234 LUAD Methylation_Array tumor CPT0214650009 203219640158_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3ed60156-df5b-4484-890f-f78cf8fd6d23 bbd7fd4502d39f7c58f100cac50634f0 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.miRNA-Seq.A.hg38 C3N-02234 LUAD miRNA-Seq tissue_normal CPT0214690009 b5288be2-a09b-4705-a8c5-b81f02432ffa_mirnaseq_gdc_realn.bam 178754100 BAM harmonized CPTAC3 5750c618-aa3d-4331-bf46-f4fe5429589d aca987383c747ba2445dfa5959810bad {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.miRNA-Seq.S19_L004_R1.A C3N-02234 LUAD miRNA-Seq tissue_normal CPT0214690009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L004_R1_001.unaln.bam 163927812 BAM S19_L004_R1 submitted_unaligned CPTAC3 121c45eb-1ff1-4c18-8265-d12ede42383a 98a3ee9a791d32b0f2ebf7df699574cb {"aliquot_tag": "ALQ_ac416a0e", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.miRNA-Seq.S22_L007_R1.T C3N-02234 LUAD miRNA-Seq tumor CPT0214650006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAAAAG_S22_L007_R1_001.unaln.bam 260084856 BAM S22_L007_R1 submitted_unaligned CPTAC3 7d2868f9-9e70-4998-ae20-1cf034e606e1 cd3c1517e0c2569d8041d8b4c7a75c85 {"aliquot_tag": "ALQ_f90e9a9e", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.miRNA-Seq.T.hg38 C3N-02234 LUAD miRNA-Seq tumor CPT0214650006 02bb5bc8-7889-46a7-9113-84f69a337a64_mirnaseq_gdc_realn.bam 283345623 BAM harmonized CPTAC3 0eb8c77a-9cde-4293-bc7c-060639471393 72908d635a34233b267a54d28a0863e4 {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.RNA-Seq.chimeric.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.chimeric.gdc_realn.bam 36262698 BAM chimeric harmonized CPTAC3 cd54dfb5-01af-4d96-9eaa-e647e48daa1d 11a5662f3ed2b24e24cdfc7770221706 {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.RNA-Seq.chimeric.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.chimeric.gdc_realn.bam 52397823 BAM chimeric harmonized CPTAC3 9efd5106-9cf3-40c4-aafe-071ce91fc0c4 fca55abbb0755e5509cf5ad3e701934c {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.RNA-Seq.genomic.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.genomic.gdc_realn.bam 7293590106 BAM genomic harmonized CPTAC3 060bfeae-e166-458c-8180-39c11cc6d134 45b6924e20b28f368d6d0d215cb837fd {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.RNA-Seq.genomic.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.genomic.gdc_realn.bam 10851062794 BAM genomic harmonized CPTAC3 6302768d-195c-46d6-8bd1-682c876d52ff 27addf115bd7c336883e84bb89b06b63 {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.RNA-Seq.S11_L003_R1.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R1_001.fastq.gz 3516106052 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 4a6243fe-d07c-4b4c-a535-b8d2fcc0ca8e 39b5ffee73996ea864eea2359cf4074e {"aliquot_tag": "ALQ_ac416a0e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.RNA-Seq.S11_L003_R2.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R2_001.fastq.gz 3526251602 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 b0d03a2f-f12e-485b-a75c-3616eaf5e300 58396b03ab7d5d67370c37c1af56abd7 {"aliquot_tag": "ALQ_ac416a0e", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.RNA-Seq.S24_L008_R1.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R1_001.fastq.gz 4822647499 FASTQ S24_L008_R1 submitted_unaligned CPTAC3 d8d65877-975f-41b9-9cad-765a66ee833b c1c0adfe4d60b930fff512931822da48 {"aliquot_tag": "ALQ_f90e9a9e", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.RNA-Seq.S24_L008_R2.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R2_001.fastq.gz 5178574775 FASTQ S24_L008_R2 submitted_unaligned CPTAC3 b4a027e3-051a-4c29-abad-353feacb037f bb8ebdbdff347dc0cfc261a4cf34e185 {"aliquot_tag": "ALQ_f90e9a9e", "sample": "S24", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.RNA-Seq.transcriptome.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.transcriptome.gdc_realn.bam 8191564453 BAM transcriptome harmonized CPTAC3 45f05bf1-6dc8-4fdd-a95c-453860328810 3ea49380cfa6c496578ebafb67195221 {"aliquot_tag": "ALQ_ac416a0e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.RNA-Seq.transcriptome.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.transcriptome.gdc_realn.bam 12992602438 BAM transcriptome harmonized CPTAC3 56b1eaf0-cd86-4109-a239-dd7e6401ddd0 312a6df0ad5fe4f01a20e7b966d0ff82 {"aliquot_tag": "ALQ_f90e9a9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.WGS.N C3N-02234 LUAD WGS blood_normal CPT0214770002 CPT0214770002.WholeGenome.RP-1303.bam 64248195161 BAM submitted_aligned CPTAC3 49dfba8f-4dbd-4a0d-b430-136ca38f26e1 acaefb05946798f203134821b11e8798 {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02234.WGS.N.hg38 C3N-02234 LUAD WGS blood_normal CPT0214770002 6838033f-fe05-4921-b81c-a2b133e8af47_wgs_gdc_realn.bam 95179674878 BAM harmonized CPTAC3 255c1318-cee3-4bdf-80aa-a707cda68799 908fc7a95123189aa25dcad61aa91476 {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02234.WGS.T C3N-02234 LUAD WGS tumor CPT0214650009 CPT0214650009.WholeGenome.RP-1303.bam 58947993796 BAM submitted_aligned CPTAC3 4fcdb262-8789-4088-aaf7-3efed8935c8d 93f61d9afb685020e512e2a676d309b8 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.WGS.T.hg38 C3N-02234 LUAD WGS tumor CPT0214650009 9160a210-877e-4a7c-a7d4-88c589c29176_wgs_gdc_realn.bam 86486300371 BAM harmonized CPTAC3 ff131295-7519-4192-9d39-410c1a193eb6 d7c4521f73b0b755418110df83ac7571 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.WXS.A C3N-02234 LUAD WXS tissue_normal CPT0214690006 CPT0214690006.WholeExome.RP-1303.bam 32344950030 BAM submitted_aligned CPTAC3 92a6af4e-4211-485e-a73e-8157a9fef3e3 5eba979924d1e46bc8b5c146077d7646 {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.WXS.A.hg38 C3N-02234 LUAD WXS tissue_normal CPT0214690006 36200093-4dae-480b-83ea-6551b84350d3_wxs_gdc_realn.bam 45334134204 BAM harmonized CPTAC3 16648f35-f484-402a-900d-90979fb6c635 f3fc314d58eec22bbf79b3b1f5f0e1a4 {"aliquot_tag": "ALQ_3cfe779f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02234.WXS.N C3N-02234 LUAD WXS blood_normal CPT0214770002 CPT0214770002.WholeExome.RP-1303.bam 29101750767 BAM submitted_aligned CPTAC3 5306639f-575f-40d9-ab1a-2880e66a56a5 963b66f7a48e0aa39e8aba9c1bcb56e5 {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02234.WXS.N.hg38 C3N-02234 LUAD WXS blood_normal CPT0214770002 6838033f-fe05-4921-b81c-a2b133e8af47_wxs_gdc_realn.bam 39563795202 BAM harmonized CPTAC3 96b5390c-ddd0-4735-95c7-fa0fb022a836 e16ff0e93acdc9f6a47e0841260c5a6d {"aliquot_tag": "ALQ_4fffde42", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02234.WXS.T C3N-02234 LUAD WXS tumor CPT0214650009 CPT0214650009.WholeExome.RP-1303.bam 25466558034 BAM submitted_aligned CPTAC3 92f5b7f4-6df1-40b7-b8d5-04649ceaf48f 76cc7e0ac4e0ff18b506912ed036bcbb {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02234.WXS.T.hg38 C3N-02234 LUAD WXS tumor CPT0214650009 9160a210-877e-4a7c-a7d4-88c589c29176_wxs_gdc_realn.bam 35244875264 BAM harmonized CPTAC3 888a2b96-6b38-40cc-8483-1e13164b8b2e a16008a8da23a995064573aff8408162 {"aliquot_tag": "ALQ_69b1870f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.MethArray.Green.A C3N-02237 LUAD Methylation_Array tissue_normal CPT0214870006 203219640068_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f7c47d68-6d95-441c-aea3-8cce2a6c654a 2d4378d3ca3ae6ebe3bc99edfa381891 {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.MethArray.Green.T C3N-02237 LUAD Methylation_Array tumor CPT0214850009 203219670118_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f911b300-a703-4c9b-9df0-6d8509cfd36d 5e8863936646e99a25891341b44c3fff {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.MethArray.Red.A C3N-02237 LUAD Methylation_Array tissue_normal CPT0214870006 203219640068_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 4de800ed-78cc-43a6-8cb9-aebd430c99ed ed672ac19599287fd54c2d4708ed86d9 {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.MethArray.Red.T C3N-02237 LUAD Methylation_Array tumor CPT0214850009 203219670118_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 91c4989c-cdd5-49fe-9c0a-a925bd76ee9a 2f6019830c4441a3a6b297f604cc036b {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.miRNA-Seq.A.hg38 C3N-02237 LUAD miRNA-Seq tissue_normal CPT0214870009 85443e0a-0303-4be2-a95c-8315dbff2564_mirnaseq_gdc_realn.bam 270961789 BAM harmonized CPTAC3 914f712d-949c-4b87-b8ed-847799585b35 d3b4a84a5170df53f84459bee05c24a5 {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.miRNA-Seq.S22_L005_R1.A C3N-02237 LUAD miRNA-Seq tissue_normal CPT0214870009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAAAAG_S22_L005_R1_001.unaln.bam 242985019 BAM S22_L005_R1 submitted_unaligned CPTAC3 e88b1e33-a831-440e-9891-73de32f3f315 354f424b6ae2bc6c67c63fd4cbe19475 {"aliquot_tag": "ALQ_297bb51f", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.miRNA-Seq.S31_L007_R1.T C3N-02237 LUAD miRNA-Seq tumor CPT0214850006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L007_R1_001.unaln.bam 250449063 BAM S31_L007_R1 submitted_unaligned CPTAC3 02da7fe9-e41e-4565-89be-e4b6e67b6c5d b45695ccc757c40ba93659b9374125f2 {"aliquot_tag": "ALQ_c304fbee", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.miRNA-Seq.T.hg38 C3N-02237 LUAD miRNA-Seq tumor CPT0214850006 b5e3da67-3fc9-45b1-ad88-f8f2a5922504_mirnaseq_gdc_realn.bam 280042325 BAM harmonized CPTAC3 8bfae102-6f17-4766-a653-787f12f88192 d0d8bd88b95db0ce8ae0fb2269812dec {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.RNA-Seq.chimeric.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.chimeric.gdc_realn.bam 28983096 BAM chimeric harmonized CPTAC3 6716a8ab-f524-4357-bd0f-143361bb04f9 b869ab13cc5b2245d02d97ebacb67c0e {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.RNA-Seq.chimeric.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.chimeric.gdc_realn.bam 43819249 BAM chimeric harmonized CPTAC3 39f7ef15-8059-4d2c-bb0d-fefbdc9b0a04 5636ac2b1035598b9559b3de80ecbc76 {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.RNA-Seq.genomic.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.genomic.gdc_realn.bam 7010441550 BAM genomic harmonized CPTAC3 2f4fb183-06ad-4217-9116-1bdfadb48070 abfe5f0b395aea8ed7bdc67e9dfd2854 {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.RNA-Seq.genomic.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.genomic.gdc_realn.bam 10609456850 BAM genomic harmonized CPTAC3 135b914c-5a52-4307-9729-b17d4a295f18 0ae02d648b1225263b06a820c94ac67d {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.RNA-Seq.S20_L005_R1.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R1_001.fastq.gz 3173490335 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 694de9e3-b42e-4ede-a897-d7343fec5ba7 b3ea96c2bed3bdd6bdb4d6bf7711a64a {"aliquot_tag": "ALQ_297bb51f", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.RNA-Seq.S20_L005_R2.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R2_001.fastq.gz 3261569211 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 7548401e-d472-4466-8b44-75e0fac2d182 91f8ceafb0f478906ab184f31598bdf5 {"aliquot_tag": "ALQ_297bb51f", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.RNA-Seq.S3_L001_R1.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4145298042 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 887287bb-d678-44ff-853b-8cbf65ef6c06 0f55cefea5e9620ba195c98a1cd23932 {"aliquot_tag": "ALQ_c304fbee", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.RNA-Seq.S3_L001_R2.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4554668625 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 86e384ef-8b7b-4be6-b4f6-d0a2b9451c11 622681ed03094eea86670a84d3f78a9a {"aliquot_tag": "ALQ_c304fbee", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.RNA-Seq.transcriptome.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.transcriptome.gdc_realn.bam 8222068577 BAM transcriptome harmonized CPTAC3 ff8f5c81-343e-40fe-a4d6-b5f21988bbd4 fa04f90aa72260915010ad78490c74c6 {"aliquot_tag": "ALQ_297bb51f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.RNA-Seq.transcriptome.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.transcriptome.gdc_realn.bam 10726415577 BAM transcriptome harmonized CPTAC3 abd12a9b-3b3d-41b0-aa53-22a704b52a39 5e37a71f7e6c311c6b6bf355ef72b49a {"aliquot_tag": "ALQ_c304fbee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.WGS.N C3N-02237 LUAD WGS blood_normal CPT0214950002 CPT0214950002.WholeGenome.RP-1303.bam 66258961744 BAM submitted_aligned CPTAC3 46552bba-49e0-456d-aaa1-6de480c7bd9b 2fd33721068803d347946318c7d442b9 {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02237.WGS.N.hg38 C3N-02237 LUAD WGS blood_normal CPT0214950002 2b7774ec-ce17-443d-9dc1-b87fa63e7c6c_wgs_gdc_realn.bam 98947404000 BAM harmonized CPTAC3 5bad7877-9282-4204-b341-5ae262074565 b7058561262f4b4b5621ea8e7203583b {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02237.WGS.T C3N-02237 LUAD WGS tumor CPT0214850009 CPT0214850009.WholeGenome.RP-1303.bam 60980293132 BAM submitted_aligned CPTAC3 321d69bd-6a56-4f18-8c20-5c3fd6be132c 8c9e453a81a5dd2c74eb4d8bd5b4e5d5 {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.WGS.T.hg38 C3N-02237 LUAD WGS tumor CPT0214850009 62956bee-d2b1-480c-b0fd-acbb69a295a1_wgs_gdc_realn.bam 90222132682 BAM harmonized CPTAC3 382fc845-40fe-4581-b0b3-b84875b74283 d01113b0ece2c3e42be95aa76edc0502 {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.WXS.A C3N-02237 LUAD WXS tissue_normal CPT0214870006 CPT0214870006.WholeExome.RP-1303.bam 25680984217 BAM submitted_aligned CPTAC3 49502ed3-ed93-4465-b05b-81d22c7049c2 558c0dae5fb607f105c9585af163f7e2 {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.WXS.A.hg38 C3N-02237 LUAD WXS tissue_normal CPT0214870006 66c29208-31f9-4b24-8256-cf29ab981393_wxs_gdc_realn.bam 35647327765 BAM harmonized CPTAC3 6607cc80-55bf-4425-b285-c7a6301d44f9 80d920e4106094d4427e0c464d2b7eeb {"aliquot_tag": "ALQ_b9c4a88e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02237.WXS.N C3N-02237 LUAD WXS blood_normal CPT0214950002 CPT0214950002.WholeExome.RP-1303.bam 32187589752 BAM submitted_aligned CPTAC3 103ebfef-41f0-4221-9af2-b4f38951ad26 6f775bb6c1292d54cd22c286350d32f9 {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02237.WXS.N.hg38 C3N-02237 LUAD WXS blood_normal CPT0214950002 2b7774ec-ce17-443d-9dc1-b87fa63e7c6c_wxs_gdc_realn.bam 44647860255 BAM harmonized CPTAC3 4959a093-6ccb-4ae3-ae17-1e988e67f35d 4fa294019c7c647b23580e0782586697 {"aliquot_tag": "ALQ_f35ec52", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02237.WXS.T C3N-02237 LUAD WXS tumor CPT0214850009 CPT0214850009.WholeExome.RP-1303.bam 21615589371 BAM submitted_aligned CPTAC3 77a19873-e4a4-44df-a374-ef6a068ab40c 98ca79e9f20e44ddaaac6a2eacecd9c6 {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02237.WXS.T.hg38 C3N-02237 LUAD WXS tumor CPT0214850009 62956bee-d2b1-480c-b0fd-acbb69a295a1_wxs_gdc_realn.bam 30200808075 BAM harmonized CPTAC3 933a7fd7-42d2-4717-946f-7c0dfe7d9b5a d337822f8aec1b96fd650ca3330ce14c {"aliquot_tag": "ALQ_53bbe67f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.MethArray.Green.A C3N-02240 LUAD Methylation_Array tissue_normal CPT0215230006 203219650165_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0b2be5f9-3ca5-4080-afc3-c141af2dff9a d630d47803176a93a9f4a38fa3cb4796 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.MethArray.Green.T C3N-02240 LUAD Methylation_Array tumor CPT0215210009 203219670141_R03C01_Grn.idat 13676218 IDAT Green NA CPTAC3 60338b6c-2504-4176-b4dc-575a7e8c3af4 02c3038b2192678b6b5290891c6c9900 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.MethArray.Red.A C3N-02240 LUAD Methylation_Array tissue_normal CPT0215230006 203219650165_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 e62935e9-f1fd-4dbd-be2c-7d56938556ed 888896c6ed15d3f226d84498df84cc83 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.MethArray.Red.T C3N-02240 LUAD Methylation_Array tumor CPT0215210009 203219670141_R03C01_Red.idat 13676218 IDAT Red NA CPTAC3 a84d19b8-3f5a-4cd6-8088-1307575b39bf 96dca5510d5d898f4357c4e51f0f2569 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.miRNA-Seq.A.hg38 C3N-02240 LUAD miRNA-Seq tissue_normal CPT0215230009 24cb48ed-97cf-4f19-8668-37c8b06b52f9_mirnaseq_gdc_realn.bam 257206873 BAM harmonized CPTAC3 75b2b73e-de62-47ef-b0d2-78e97763001c b6fcf409c37cbd9e4f88e51daccf41e8 {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.miRNA-Seq.S31_L005_R1.A C3N-02240 LUAD miRNA-Seq tissue_normal CPT0215230009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L005_R1_001.unaln.bam 232002064 BAM S31_L005_R1 submitted_unaligned CPTAC3 77727bd7-0e6a-4258-a7a0-b559dd0fbcad 053d959c1423bd36bc376d5af28ed89f {"aliquot_tag": "ALQ_db173b0d", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.miRNA-Seq.S32_L007_R1.T C3N-02240 LUAD miRNA-Seq tumor CPT0215210006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L007_R1_001.unaln.bam 236529473 BAM S32_L007_R1 submitted_unaligned CPTAC3 a0e02d30-742a-42cc-84ed-a4ad7e47795c c74ec1e924944be4d302cba9b37c663f {"aliquot_tag": "ALQ_316875fc", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.miRNA-Seq.T.hg38 C3N-02240 LUAD miRNA-Seq tumor CPT0215210006 5fd95431-d397-4566-aba7-85e7b725b0f4_mirnaseq_gdc_realn.bam 257499440 BAM harmonized CPTAC3 9ea0c535-3300-4bd9-812b-b8ebf5868841 9717589ad6eefc6c2ad53cc01685e882 {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.RNA-Seq.chimeric.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.chimeric.gdc_realn.bam 37094708 BAM chimeric harmonized CPTAC3 65a25fb7-4887-46d8-abaa-0d49f41172f1 42437e4f3b1d6b4df5f9ccdedf73cee2 {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.RNA-Seq.chimeric.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.chimeric.gdc_realn.bam 46471924 BAM chimeric harmonized CPTAC3 b0744ba4-0d3f-4b98-996a-9d737b3f2404 caac02d1618c3c972631fc1b990cde1b {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.RNA-Seq.genomic.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.genomic.gdc_realn.bam 8776218197 BAM genomic harmonized CPTAC3 2ebbc498-3b9e-4bcb-bec0-d2368dcc4895 d327bbd39dc163620e3bc307cab68e7d {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.RNA-Seq.genomic.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.genomic.gdc_realn.bam 10112960694 BAM genomic harmonized CPTAC3 1c37a978-06ca-46eb-9d55-4933c73894bc 4050bc29dec1b4b58008d2e22813f337 {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.RNA-Seq.S23_L006_R1.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 4000778700 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 86b9c3b7-2f71-4b57-8630-96d33bfcb9f1 328f2ca1e1b65a53b2c69cde66a05d4b {"aliquot_tag": "ALQ_db173b0d", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.RNA-Seq.S23_L006_R2.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4291228392 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 f70ff136-b424-455d-a3f1-20b768878332 24ca4d23534788eb1a8e0ee53b8e149d {"aliquot_tag": "ALQ_db173b0d", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.RNA-Seq.S2_L001_R1.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 4259265998 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 8937d276-3c0e-41d5-bdf7-1fced441027f 93871aed801e11740ae96b4ac0ed78f3 {"aliquot_tag": "ALQ_316875fc", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.RNA-Seq.S2_L001_R2.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4743230676 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 9c59f9b1-b728-45eb-93af-e895ae90be4b 932c8bf36863d3fb052333540fa772e0 {"aliquot_tag": "ALQ_316875fc", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.RNA-Seq.transcriptome.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.transcriptome.gdc_realn.bam 10497477501 BAM transcriptome harmonized CPTAC3 a0261caf-c6ae-44c8-99ad-685f9d0f4119 09581b40d6fa21e441c8a8f64b53f842 {"aliquot_tag": "ALQ_db173b0d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.RNA-Seq.transcriptome.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.transcriptome.gdc_realn.bam 11840258562 BAM transcriptome harmonized CPTAC3 e30be0e2-9c62-48d3-b0eb-aa61b51637b6 ec628b14e2756eadf35fd0eb370de9db {"aliquot_tag": "ALQ_316875fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.WGS.N C3N-02240 LUAD WGS blood_normal CPT0215310002 CPT0215310002.WholeGenome.RP-1303.bam 59855236740 BAM submitted_aligned CPTAC3 5216c99a-d97a-4904-8ec6-1ff6fe1e6c0c 53a82779c1cf43ca01703366771fe841 {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02240.WGS.N.hg38 C3N-02240 LUAD WGS blood_normal CPT0215310002 0d11ebdf-9907-4aff-b8a5-97e754c0caeb_wgs_gdc_realn.bam 87600838568 BAM harmonized CPTAC3 dd21ed09-9849-40a8-b0f9-2ad12e71cefb 6298c6df3be976af6dd339557cd90a7c {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02240.WGS.T C3N-02240 LUAD WGS tumor CPT0215210009 CPT0215210009.WholeGenome.RP-1303.bam 56594142198 BAM submitted_aligned CPTAC3 6a22cc53-1e73-4460-b4a5-623e675b4dee 751d8f4329b3d7864e0a0d03051e9ca3 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.WGS.T.hg38 C3N-02240 LUAD WGS tumor CPT0215210009 9e66559d-15d6-4d45-ad2e-9f17e274f71c_wgs_gdc_realn.bam 81847858316 BAM harmonized CPTAC3 3ace64b3-35d5-4910-aded-b0a2038e613d 3159c4e9a69e4d5d2906e4564e11f01e {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.WXS.A C3N-02240 LUAD WXS tissue_normal CPT0215230006 CPT0215230006.WholeExome.RP-1303.bam 36880878983 BAM submitted_aligned CPTAC3 7a278d78-0191-4538-8ba7-28a2b26302ab 285ebeb7838c9a0b47c5e0964c6b8c64 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.WXS.A.hg38 C3N-02240 LUAD WXS tissue_normal CPT0215230006 edd38d60-98cb-48f5-a8be-59d670a123f8_wxs_gdc_realn.bam 50824143687 BAM harmonized CPTAC3 ac60b03d-d0f5-4f38-b89d-32474709098f d9aa09b9f9342b1a7569cd52413d04c6 {"aliquot_tag": "ALQ_4ba8269c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02240.WXS.N C3N-02240 LUAD WXS blood_normal CPT0215310002 CPT0215310002.WholeExome.RP-1303.bam 23109485521 BAM submitted_aligned CPTAC3 2d149ebc-4614-4b6b-898f-a13dfaeff210 5b4fb9592cf35af6933755fbe780b509 {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02240.WXS.N.hg38 C3N-02240 LUAD WXS blood_normal CPT0215310002 0d11ebdf-9907-4aff-b8a5-97e754c0caeb_wxs_gdc_realn.bam 31526382325 BAM harmonized CPTAC3 bbce8743-b197-4cd9-a30a-7ad27925e1a3 a169b17eedb9214874fb930ddc61d6db {"aliquot_tag": "ALQ_fd596240", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02240.WXS.T C3N-02240 LUAD WXS tumor CPT0215210009 CPT0215210009.WholeExome.RP-1303.bam 21890840879 BAM submitted_aligned CPTAC3 eaade8c8-5c10-44a3-b31e-a4cc5c24af87 b0c27f3accfdd8090c7229b6d488ed32 {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02240.WXS.T.hg38 C3N-02240 LUAD WXS tumor CPT0215210009 9e66559d-15d6-4d45-ad2e-9f17e274f71c_wxs_gdc_realn.bam 30331717008 BAM harmonized CPTAC3 679cbea5-c38e-4b14-9956-0d02ff2fb588 9e86214c53429bb21a9c9de588211cfe {"aliquot_tag": "ALQ_a1d7686d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.MethArray.Green.A C3N-02242 LUAD Methylation_Array tissue_normal CPT0215410006 203219750071_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 41613235-f144-4370-b59d-5cf47c23d52f 5fa2f4dbc9ddbceca32baf6afeabe024 {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.MethArray.Green.T C3N-02242 LUAD Methylation_Array tumor CPT0215400009 203219650177_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 49ac69cf-52b8-4282-bab7-36cb7ab785a5 0f8d9bf2dd11cd46d466c7803a718213 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.MethArray.Red.A C3N-02242 LUAD Methylation_Array tissue_normal CPT0215410006 203219750071_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 0220fbe2-4081-4b6a-8ddd-1f00497bc0a4 d713834745b662396f206b1dc92dc6e8 {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.MethArray.Red.T C3N-02242 LUAD Methylation_Array tumor CPT0215400009 203219650177_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 6aadc82a-4843-4a10-ac56-44b3fcc21e46 a8059b8c06fdd3a603cc67af3b616b2f {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.miRNA-Seq.A.hg38 C3N-02242 LUAD miRNA-Seq tissue_normal CPT0215410009 e3ac6364-f3d1-48db-bf9a-6ceb4c0f5fe6_mirnaseq_gdc_realn.bam 235475569 BAM harmonized CPTAC3 8769051b-90ef-4109-8edd-3f9871c4b9e2 997e3a8c6a49af92b01a7539372fba75 {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.miRNA-Seq.S33_L007_R1.T C3N-02242 LUAD miRNA-Seq tumor CPT0215400006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L007_R1_001.unaln.bam 226192584 BAM S33_L007_R1 submitted_unaligned CPTAC3 138fa03e-da6e-4780-ab38-179529a3e3c7 c267961ad444c9b9c5d98e228530d11e {"aliquot_tag": "ALQ_da51bf51", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.miRNA-Seq.S4_L006_R1.A C3N-02242 LUAD miRNA-Seq tissue_normal CPT0215410009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L006_R1_001.unaln.bam 213680706 BAM S4_L006_R1 submitted_unaligned CPTAC3 f2e43ce6-b2bb-4140-983e-5a2947d790b7 b4e9c121c344eed671ee3049457fcaaa {"aliquot_tag": "ALQ_778e8b70", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.miRNA-Seq.T.hg38 C3N-02242 LUAD miRNA-Seq tumor CPT0215400006 81dbab21-ea17-4bef-8451-7cb56ecda8e0_mirnaseq_gdc_realn.bam 247139200 BAM harmonized CPTAC3 6e36b948-3529-4522-a993-6a7f2d2db1e9 75794a8ccb3b0708ac19adfcda9ce356 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.RNA-Seq.chimeric.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.chimeric.gdc_realn.bam 46865174 BAM chimeric harmonized CPTAC3 84c8ec7d-3f30-4ced-894e-9c7f008496c6 c43703f155f94cfc89bfc64c5353e391 {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.RNA-Seq.chimeric.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.chimeric.gdc_realn.bam 42850781 BAM chimeric harmonized CPTAC3 067993cb-e672-4bcd-94ef-c8552314c00e 1b71b9622d3e6a1238b78cdcf9349e64 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.RNA-Seq.genomic.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.genomic.gdc_realn.bam 8797649961 BAM genomic harmonized CPTAC3 56cce741-1398-4821-9bc1-b8f6ada5555c 0fbcda519ac287581b0ab9b3eb142c60 {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.RNA-Seq.genomic.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.genomic.gdc_realn.bam 8503337051 BAM genomic harmonized CPTAC3 87d16c6e-9dbb-48ad-9236-018847726be0 ac966a99f8c1aa0b596ff26f7ad9a657 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.RNA-Seq.S15_L004_R1.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R1_001.fastq.gz 3724389175 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 79c4491e-91af-47b6-82a7-2d51e8fbd39c 416b6b1ead7c4f186088b96f446d05be {"aliquot_tag": "ALQ_da51bf51", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.RNA-Seq.S15_L004_R2.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R2_001.fastq.gz 4097859326 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 c933fbca-dc15-4090-8b59-35979f173e0c 12b2c5501652fd115d1d90f0727a4ced {"aliquot_tag": "ALQ_da51bf51", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.RNA-Seq.S7_L002_R1.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R1_001.fastq.gz 3893573485 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 d92f6349-19c6-4d2e-aaa7-df2b50bf8f97 dc6b04f686c42754d761a6fb02c0a464 {"aliquot_tag": "ALQ_778e8b70", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.RNA-Seq.S7_L002_R2.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R2_001.fastq.gz 4362131709 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 7b52e55f-d06b-4402-b2a3-b446eecda4eb e6cea890ad8ee54c1ffada4fee16881f {"aliquot_tag": "ALQ_778e8b70", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.RNA-Seq.transcriptome.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.transcriptome.gdc_realn.bam 9018634921 BAM transcriptome harmonized CPTAC3 384990ba-0367-40f9-a971-ca315ecaeaec 160917b3a5acce36805d3bacb0ca050a {"aliquot_tag": "ALQ_778e8b70", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.RNA-Seq.transcriptome.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.transcriptome.gdc_realn.bam 10583615377 BAM transcriptome harmonized CPTAC3 b09d5509-99f9-497a-ba78-2736e2213f02 22d2074aec839c7a098e0254a817f427 {"aliquot_tag": "ALQ_da51bf51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.WGS.N C3N-02242 LUAD WGS blood_normal CPT0215490002 CPT0215490002.WholeGenome.RP-1303.bam 52041367855 BAM submitted_aligned CPTAC3 100f95dc-898a-48da-bdd0-6c2c77df10dc 16090841828b2c9496bf8b43ed99c160 {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02242.WGS.N.hg38 C3N-02242 LUAD WGS blood_normal CPT0215490002 7223aa6b-89c1-4dd1-bb0b-924f7940ae8c_wgs_gdc_realn.bam 76640265740 BAM harmonized CPTAC3 7a1a13b5-6f67-4b57-9e4a-a4abc28f1966 6e4b381514546d178e5a9f3ec5442857 {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02242.WGS.T C3N-02242 LUAD WGS tumor CPT0215400009 CPT0215400009.WholeGenome.RP-1303.bam 57588960935 BAM submitted_aligned CPTAC3 97aa774b-90ca-44c6-8013-78d8fc08afc9 cdef9558b4bd1f64df154a5f19105e90 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.WGS.T.hg38 C3N-02242 LUAD WGS tumor CPT0215400009 82a41093-64d0-4c51-be9c-b93c796319b3_wgs_gdc_realn.bam 85532652979 BAM harmonized CPTAC3 c1ac5dd5-af87-4932-ad36-f05e396812ec c884163797ef1640ebd8934161d4e136 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.WXS.A C3N-02242 LUAD WXS tissue_normal CPT0215410006 CPT0215410006.WholeExome.RP-1303.bam 45475755364 BAM submitted_aligned CPTAC3 a7e2ee0a-1585-41e4-9ffa-a54cf79c6372 528d33feb947ef9f81fbd1386cbbcf1a {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.WXS.A.hg38 C3N-02242 LUAD WXS tissue_normal CPT0215410006 6a9d64ec-47a9-4fe9-98fa-dcf0b194caee_wxs_gdc_realn.bam 62478776865 BAM harmonized CPTAC3 c66be722-0689-4471-b5c6-e53a965bc9e7 e5e4b2c31ac568716e2919404aba8eb9 {"aliquot_tag": "ALQ_e73196e1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02242.WXS.N C3N-02242 LUAD WXS blood_normal CPT0215490002 CPT0215490002.WholeExome.RP-1303.bam 20198524980 BAM submitted_aligned CPTAC3 40cff579-64d4-4bc4-a818-44e8fbe1bf0d fa7a023277fc3d24d1f3cb1b4690fa9a {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02242.WXS.N.hg38 C3N-02242 LUAD WXS blood_normal CPT0215490002 7223aa6b-89c1-4dd1-bb0b-924f7940ae8c_wxs_gdc_realn.bam 28025567244 BAM harmonized CPTAC3 af86f4e3-5f6d-4c54-9a95-71dafc835215 257dab8625f958f4d36b9b649d1dee0d {"aliquot_tag": "ALQ_d02c1939", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02242.WXS.T C3N-02242 LUAD WXS tumor CPT0215400009 CPT0215400009.WholeExome.RP-1303.bam 25302152895 BAM submitted_aligned CPTAC3 30b85817-fcb0-46a5-81c2-af0a3c22be30 0764354de6ff5a59bd2f99613acf2e7b {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02242.WXS.T.hg38 C3N-02242 LUAD WXS tumor CPT0215400009 82a41093-64d0-4c51-be9c-b93c796319b3_wxs_gdc_realn.bam 34513305736 BAM harmonized CPTAC3 674994d2-26ba-42e6-af03-f4ea17eb0f11 eb6f8c5d4cdebc740dd1fcfc47e0e048 {"aliquot_tag": "ALQ_4aeea2c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02244.MethArray.Green.T C3N-02244 UCEC Methylation_Array tumor CPT0128960006 203219640133_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 16c61d57-d35f-4592-914a-44e1b4012b15 107257a2adeaa7d87a0e2e6757669ef4 {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.MethArray.Red.T C3N-02244 UCEC Methylation_Array tumor CPT0128960006 203219640133_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 a5a552fc-ea2c-4774-a349-2468404c64a7 632831767644cfaa24444449e9c6e2cc {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.miRNA-Seq.S16_L004_R1.T C3N-02244 UCEC miRNA-Seq tumor CPT0128960009 190108_UNC31-K00269_0176_AHYGLVBBXX_CCGTCC_S16_L004_R1_001.unaln.bam 261954688 BAM S16_L004_R1 submitted_unaligned CPTAC3 dad53e76-942e-4108-8e36-d64f69c41e5b 839e00bff5f4238e7f2cba5e1239a0dd {"aliquot_tag": "ALQ_afe51e58", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.miRNA-Seq.T.hg38 C3N-02244 UCEC miRNA-Seq tumor CPT0128960009 5f915905-2391-4c45-a92f-f8455bfe205c_mirnaseq_gdc_realn.bam 287458899 BAM harmonized CPTAC3 74e61a6a-0454-4318-99b9-b150ad08c31a f42a308c38417d89195e00908383d2e3 {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.chimeric.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.chimeric.gdc_realn.bam 51503873 BAM chimeric harmonized CPTAC3 105509d4-d51f-4e52-b0f6-07601a93fbde 3c1d591abd31af54e3da17a71aed92d2 {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.chimeric.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.chimeric.gdc_realn.bam 272971354 BAM chimeric harmonized CPTAC3 ec163594-7436-4a82-90fa-03f8f8a2b4f3 17d41f436fe488908a44749692c8b9d0 {"aliquot_tag": "ALQ_af0639b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.genomic.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.genomic.gdc_realn.bam 9547138330 BAM genomic harmonized CPTAC3 5c0a32ca-ab5b-4bd9-bfd8-7c0813628129 3e37fea55c3f4a4de96a381845bab97f {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.genomic.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.genomic.gdc_realn.bam 15803971428 BAM genomic harmonized CPTAC3 7041a013-e495-4fce-9b7b-7cdd77459f95 a375d8fc0c3a6ec655f024c6d705e5b4 {"aliquot_tag": "ALQ_af0639b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.S12_L004_R1.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R1_001.fastq.gz 4373165706 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 97a680a9-c31f-4139-b119-8d1bed262d43 cb7b4caf8963e7b3df4e292194064615 {"aliquot_tag": "ALQ_afe51e58", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.S12_L004_R2.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R2_001.fastq.gz 4465880356 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 a7ba3331-3d0c-4a01-a11e-d1b5628c2d1a 611b56558b301522dbbf4d188f4ee60d {"aliquot_tag": "ALQ_afe51e58", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.S55_R1.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R1_001.fastq.gz 8929658897 FASTQ S55_R1 submitted_unaligned CPTAC3 a95fb7ee-a459-4581-ae0d-c2f2cf028304 3788d9d05ba71b67f268c75586c171e4 {"aliquot_tag": "ALQ_af0639b6", "sample": "S55", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.S55_R2.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R2_001.fastq.gz 9324635698 FASTQ S55_R2 submitted_unaligned CPTAC3 1b379483-2be0-4447-a925-5dc1727b685d 3d3f64c680c43e2d5f0f9982c0a2c09c {"aliquot_tag": "ALQ_af0639b6", "sample": "S55", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.transcriptome.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.transcriptome.gdc_realn.bam 9217387197 BAM transcriptome harmonized CPTAC3 aa2347f3-b4f9-4232-94f6-9f9ea7fa6f56 8ea762e011cb7fefcebbc65394bbab58 {"aliquot_tag": "ALQ_afe51e58", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.RNA-Seq.transcriptome.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.transcriptome.gdc_realn.bam 9661130781 BAM transcriptome harmonized CPTAC3 b2625944-283e-4add-b8b3-5458d0a10e6b db0394b6cccddbcb3862fb5966d9cd20 {"aliquot_tag": "ALQ_af0639b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.WGS.N C3N-02244 UCEC WGS blood_normal CPT0130790002 CPT0130790002.WholeGenome.RP-1303.bam 62808517216 BAM submitted_aligned CPTAC3 9b73f5e2-8542-48aa-a37d-32492e26dca1 4f5715f692d55339bfda88cbae3e7fe7 {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02244.WGS.N.hg38 C3N-02244 UCEC WGS blood_normal CPT0130790002 dc38f60d-f4cc-4468-aba1-4e164e246570_wgs_gdc_realn.bam 91212059309 BAM harmonized CPTAC3 8e9bba9a-0424-4f69-97be-1c3c9c9a8e18 e38ba07fb7ae5c05096447f3cd3b81e0 {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02244.WGS.T C3N-02244 UCEC WGS tumor CPT0128960006 CPT0128960006.WholeGenome.RP-1303.bam 59045166107 BAM submitted_aligned CPTAC3 4eeb983a-7654-4a9c-8ee4-fda81d65c786 aea72dca16ea4bf67d847ade475f81ee {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.WGS.T.hg38 C3N-02244 UCEC WGS tumor CPT0128960006 f0508592-8984-40b3-b199-cd49719d56bd_wgs_gdc_realn.bam 85301478851 BAM harmonized CPTAC3 b66429dd-d974-4acf-b25e-b45eb1210ae8 918cc67160930d8652aba64ffc3dcd10 {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.WXS.N C3N-02244 UCEC WXS blood_normal CPT0130790002 CPT0130790002.WholeExome.RP-1303.bam 29251543289 BAM submitted_aligned CPTAC3 c8911b49-6430-444e-9701-66d6e87ee867 c75326806808b8c97c8f55f2c5b86cea {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02244.WXS.N.hg38 C3N-02244 UCEC WXS blood_normal CPT0130790002 dc38f60d-f4cc-4468-aba1-4e164e246570_wxs_gdc_realn.bam 40629313479 BAM harmonized CPTAC3 d3542a68-a032-4fd5-80df-256d6ec69eb1 b0470daef295297a229784b9c422ad2f {"aliquot_tag": "ALQ_7f287f88", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02244.WXS.T C3N-02244 UCEC WXS tumor CPT0128960006 CPT0128960006.WholeExome.RP-1303.bam 24208818106 BAM submitted_aligned CPTAC3 23f4c741-ad23-4f4d-9d6b-6fb2fa61336c 86d7ba12e9a65f7e8e1a795f7dec2106 {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02244.WXS.T.hg38 C3N-02244 UCEC WXS tumor CPT0128960006 f0508592-8984-40b3-b199-cd49719d56bd_wxs_gdc_realn.bam 32722721438 BAM harmonized CPTAC3 926a9db3-cac7-4f8e-ba11-86d84349b6e8 9ae6e92201c45d5419c7f6f98e39a29c {"aliquot_tag": "ALQ_3f5a03c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.DUP_3d435967.WGS.T C3N-02247 UCEC WGS tumor CPT0265300006_1 CPT0265300006_1.WholeGenome.RP-1303.bam 85145559916 BAM submitted_aligned CPTAC3 4876a270-c55e-443a-9cce-d6e5774d78a7 b85b43977e03b6a47be3fd4d636eb2d1 {"aliquot_tag": "DUP_3d435967", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.DUP_3d435967.WGS.T.hg38 C3N-02247 UCEC WGS tumor CPT0265300006_1 26202983-46df-480f-b729-c358bbfca65d_wgs_gdc_realn.bam 122224965740 BAM harmonized CPTAC3 2c4f599d-484e-4c84-bd0f-833d53ffc12d 3fd9c4dc7f0ca2c4d31fe6e8a174f393 {"aliquot_tag": "DUP_3d435967", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.MethArray.Green.T C3N-02247 UCEC Methylation_Array tumor CPT0265300006 203561450008_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 99659b5f-bd2f-465b-91ae-6b1e050c2fab f84633052116defc9f226f253c4e5e8e {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.MethArray.Red.T C3N-02247 UCEC Methylation_Array tumor CPT0265300006 203561450008_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 b5684f05-3570-4da3-bb4d-c9d3199ba6af 1a250e20235306ef5117107a4a67d0c4 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.miRNA-Seq.S25_L004_R1.T C3N-02247 UCEC miRNA-Seq tumor CPT0265300009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTGAT_S25_L004_R1_001.unaln.bam 264997853 BAM S25_L004_R1 submitted_unaligned CPTAC3 418bb62a-38cf-4dd7-a131-a8837b4dee8b 7816c71a4adbedead006c45e27e74f64 {"aliquot_tag": "ALQ_5d2e9b61", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.miRNA-Seq.T.hg38 C3N-02247 UCEC miRNA-Seq tumor CPT0265300009 c710640f-3189-452e-9d83-bf6ce574a151_mirnaseq_gdc_realn.bam 299673841 BAM harmonized CPTAC3 f18e9cca-4971-4383-9da9-c6776331e81e ee1ff2ec0d51d012691c21c55520ca76 {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.chimeric.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.chimeric.gdc_realn.bam 37896601 BAM chimeric harmonized CPTAC3 f9e437d4-fecb-4e3f-ab6e-0b5d4534c61b d1ab3504cbd063b2cae7b2f73f728d16 {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.chimeric.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.chimeric.gdc_realn.bam 192046085 BAM chimeric harmonized CPTAC3 ee07b2e8-33d9-46f8-86f2-5f7ef1e616af ecc1fc2c92333520e5dc804b1fd704d3 {"aliquot_tag": "ALQ_9b159c23", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.genomic.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.genomic.gdc_realn.bam 7967421673 BAM genomic harmonized CPTAC3 b24ffa6c-a527-464c-8b28-b7ec62d6d3a7 58677e619b6c4c9c41c786aaead3d41e {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.genomic.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.genomic.gdc_realn.bam 7771075924 BAM genomic harmonized CPTAC3 d7763bc3-8fb7-4d6e-a442-12909b63c6f3 3d4b6272771de747764ede1940d992d3 {"aliquot_tag": "ALQ_9b159c23", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.S15_L004_R1.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R1_001.fastq.gz 3816292755 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 836bb5d6-7af6-4d04-974c-b93dd4f99701 41c5faa8d0ee85d5716f82b1fe032565 {"aliquot_tag": "ALQ_5d2e9b61", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.S15_L004_R2.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R2_001.fastq.gz 4179999558 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 68f07b2f-c9ae-42d5-8e3c-5259e04e69c3 7588f35ecb130d534f72f9af14c10d87 {"aliquot_tag": "ALQ_5d2e9b61", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.S4_R1.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R1_001.fastq.gz 4291621580 FASTQ S4_R1 submitted_unaligned CPTAC3 43ca214e-464d-43ce-a619-607798c07615 b3777f3762b89a0f5592598973bfeb2e {"aliquot_tag": "ALQ_9b159c23", "sample": "S4", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.S4_R2.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R2_001.fastq.gz 4404437118 FASTQ S4_R2 submitted_unaligned CPTAC3 78dc7b54-9e26-4998-837f-5f7c6b9d722c 11ba36323130cdb86af1fb4e27cb7e4a {"aliquot_tag": "ALQ_9b159c23", "sample": "S4", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.transcriptome.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.transcriptome.gdc_realn.bam 9751276941 BAM transcriptome harmonized CPTAC3 3f94e1b6-d87b-4b30-8f0b-fbdb34f0e866 7308e92fb8c9aae28f3f7040df5c0c96 {"aliquot_tag": "ALQ_5d2e9b61", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.RNA-Seq.transcriptome.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.transcriptome.gdc_realn.bam 2596901484 BAM transcriptome harmonized CPTAC3 d294a50e-734f-4835-81ad-2fc84504f92d eed0e801694a67c7886a7c712c7a5c7b {"aliquot_tag": "ALQ_9b159c23", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.WGS.N C3N-02247 UCEC WGS blood_normal CPT0264040002 CPT0264040002.WholeGenome.RP-1303.bam 61370766671 BAM submitted_aligned CPTAC3 a2a12f78-677e-4335-8e18-52e4b8179688 0d1eb675ed7a8aa4056828264aa37bf1 {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02247.WGS.N.hg38 C3N-02247 UCEC WGS blood_normal CPT0264040002 192611c7-f72b-4642-a1b2-adceb62352d2_wgs_gdc_realn.bam 90982321179 BAM harmonized CPTAC3 8f51e91f-aada-4742-956a-5066a2c3ceb5 e1cc4263716f9e07875122411099f9ca {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02247.WGS.T C3N-02247 UCEC WGS tumor CPT0265300006 CPT0265300006.WholeGenome.RP-1303.bam 28178297608 BAM submitted_aligned CPTAC3 c125bbc4-60fd-4db5-8bd2-e66857784f83 31630741c5ff592dd5b557e84db78bf3 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.WGS.T.hg38 C3N-02247 UCEC WGS tumor CPT0265300006 e78d70eb-4244-4d2d-95c9-e215bdce49f4_wgs_gdc_realn.bam 38633894800 BAM harmonized CPTAC3 15413d4e-a4a7-4d8d-b938-760a3ed38077 41fad2806f38bf28f14bd95526243239 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.WXS.N C3N-02247 UCEC WXS blood_normal CPT0264040002 CPT0264040002.WholeExome.RP-1303.bam 25593869256 BAM submitted_aligned CPTAC3 b269de0d-f2f5-4c0c-bf7d-2aed1e65c806 88675bc23d44b088175641bf8441c9c3 {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02247.WXS.N.hg38 C3N-02247 UCEC WXS blood_normal CPT0264040002 192611c7-f72b-4642-a1b2-adceb62352d2_wxs_gdc_realn.bam 35473479685 BAM harmonized CPTAC3 a5b722a0-d1cf-4760-bb28-2dfb45511734 77299705f960107528436dbaa6cbc149 {"aliquot_tag": "ALQ_1f9f9d33", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02247.WXS.T C3N-02247 UCEC WXS tumor CPT0265300006 CPT0265300006.WholeExome.RP-1303.bam 28178297656 BAM submitted_aligned CPTAC3 bf49ac3c-5b2d-4ba2-baca-02f291312980 605ae9afe288324dad6eb6f4e9d93ee6 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02247.WXS.T.hg38 C3N-02247 UCEC WXS tumor CPT0265300006 e78d70eb-4244-4d2d-95c9-e215bdce49f4_wxs_gdc_realn.bam 38683689670 BAM harmonized CPTAC3 eba1d5c3-10bf-4585-9422-5da088ffb806 08148482b01fde1b348a2ecacee5a719 {"aliquot_tag": "ALQ_cd9186f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02248.MethArray.Green.T C3N-02248 CCRCC Methylation_Array tumor CPT0129170007 203219670054_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 8d5585cf-bbe3-4f5d-8c46-4c96d39d3dbb c7596ced5ed3132ffea2d04f9353dc34 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.MethArray.Red.T C3N-02248 CCRCC Methylation_Array tumor CPT0129170007 203219670054_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 5e0cc1e0-c321-47f4-a319-13fd35786ba6 6cebda06ea2098de2c5213c2b78b5e6a {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.miRNA-Seq.A.hg38 C3N-02248 CCRCC miRNA-Seq tissue_normal CPT0129200006 a2612000-2ea3-4c41-b5eb-70885c359b0b_mirnaseq_gdc_realn.bam 238980378 BAM harmonized CPTAC3 1050769f-9840-4038-8e99-b3de14006a37 a3db8c2ecb7067e4df04ed4b7acaff22 {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02248.miRNA-Seq.S22_L003_R1.A C3N-02248 CCRCC miRNA-Seq tissue_normal CPT0129200006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAAAAG_S22_L003_R1_001.unaln.bam 212242181 BAM S22_L003_R1 submitted_unaligned CPTAC3 0f8010b1-619e-4034-bb81-b76075200cae 733ff2fb8c2f57e0855b405e26b23450 {"aliquot_tag": "ALQ_7caa0d1e", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02248.miRNA-Seq.S38_L005_R1.T C3N-02248 CCRCC miRNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTAGCT_S38_L005_R1_001.unaln.bam 268871621 BAM S38_L005_R1 submitted_unaligned CPTAC3 af48f33c-dc4a-445f-8e3e-8f7a9cb0b771 6a85906d93458831f6ef33fb9936bc6e {"aliquot_tag": "ALQ_b86637d4", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.miRNA-Seq.T.hg38 C3N-02248 CCRCC miRNA-Seq tumor CPT0129170010 b8c1c0e5-b373-444e-9ed5-b9bbcdb3455b_mirnaseq_gdc_realn.bam 292632927 BAM harmonized CPTAC3 10f91e91-2b27-46e7-8a90-0c2d41137c7f 1e8b700110c09eec4bde807cc0af7187 {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.RNA-Seq.chimeric.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.chimeric.gdc_realn.bam 116257427 BAM chimeric harmonized CPTAC3 0d9293be-816b-4f67-b95e-f1ebe54db112 48d8619723ffdbd0b4754dc95163e14f {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02248.RNA-Seq.chimeric.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.chimeric.gdc_realn.bam 62998600 BAM chimeric harmonized CPTAC3 59ebdfa8-0c66-4a7f-b58a-27749e4d8e2e 65415b8fb824fee34026257539219123 {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.RNA-Seq.genomic.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.genomic.gdc_realn.bam 7935817877 BAM genomic harmonized CPTAC3 4e80aa7c-4fa0-4f8e-9bf1-da9eff9d705b c5fee6136c04e7635f00b1fffc4f9f31 {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02248.RNA-Seq.genomic.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.genomic.gdc_realn.bam 7603906084 BAM genomic harmonized CPTAC3 dba12368-e4e0-4a36-9c70-c2afe9cbc99c 44899811e62eaab3498d4a4f5576da47 {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.RNA-Seq.S13_L005_R1.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R1_001.fastq.gz 3745524961 FASTQ S13_L005_R1 submitted_unaligned CPTAC3 9201644c-5926-4dbc-b7d4-cf0c3cbab09f 4f3ad3e702ce1ac37d39fc7136565cf6 {"aliquot_tag": "ALQ_7caa0d1e", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02248.RNA-Seq.S13_L005_R2.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R2_001.fastq.gz 3872777502 FASTQ S13_L005_R2 submitted_unaligned CPTAC3 9de691ea-8c5e-4dce-b2a7-a4aa7cfa378d b745cda025b59f48a7f00f6049be80a2 {"aliquot_tag": "ALQ_7caa0d1e", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02248.RNA-Seq.S18_L005_R1.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R1_001.fastq.gz 3688404973 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 493d3dc8-1ad8-4fae-9a6d-5dcd5e4ddb37 f96b95605a981bea09d072344c0f5bdb {"aliquot_tag": "ALQ_b86637d4", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.RNA-Seq.S18_L005_R2.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R2_001.fastq.gz 3814584631 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 6a6d5404-1afc-4593-95d3-384984531f95 b7ffce2058307973118c68ab0ee4a766 {"aliquot_tag": "ALQ_b86637d4", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.RNA-Seq.transcriptome.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.transcriptome.gdc_realn.bam 8729877169 BAM transcriptome harmonized CPTAC3 6d8a4f68-251e-45e7-82c0-18c9029139cc bca22416eceaca258dc69a9b25c198d2 {"aliquot_tag": "ALQ_7caa0d1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02248.RNA-Seq.transcriptome.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.transcriptome.gdc_realn.bam 9956708494 BAM transcriptome harmonized CPTAC3 ce2ea532-5b1c-47dc-be8b-f1c329eeb9b3 e0b43bb6871832a9e58b677e895f08fb {"aliquot_tag": "ALQ_b86637d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.WGS.N C3N-02248 CCRCC WGS blood_normal CPT0130830002 CPT0130830002.WholeGenome.RP-1303.bam 54458285622 BAM submitted_aligned CPTAC3 59da5a36-c942-4e5d-8985-1f3a91c99e2e 2e0e7d6ab52d67deac00320e89d9136b {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02248.WGS.N.hg38 C3N-02248 CCRCC WGS blood_normal CPT0130830002 bf11277c-5f06-4f58-9429-696e2fdcd6d3_wgs_gdc_realn.bam 78452702010 BAM harmonized CPTAC3 3495329f-943f-4717-818a-0602597272e8 8d271fcf064ef9595439fb24901116b7 {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02248.WGS.T C3N-02248 CCRCC WGS tumor CPT0129170007 CPT0129170007.WholeGenome.RP-1303.bam 55459907416 BAM submitted_aligned CPTAC3 06ae9a20-85fe-4584-95bc-6ce23d489016 77d2474db7263a7e6ba74df9fc7a33b4 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.WGS.T.hg38 C3N-02248 CCRCC WGS tumor CPT0129170007 6c378684-83f3-41ea-988b-68563579d68a_wgs_gdc_realn.bam 81677010106 BAM harmonized CPTAC3 ec79bd0e-6eb9-4ecd-9685-f495e82b778c 7d1bcb021c783d3d24ec0f47ea12d290 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.WXS.N C3N-02248 CCRCC WXS blood_normal CPT0130830002 CPT0130830002.WholeExome.RP-1303.bam 23344055011 BAM submitted_aligned CPTAC3 e8514c2c-5d5d-4988-86e9-f5bb85366c24 e4035f4abfdcd009fd4a51f229e0d601 {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02248.WXS.N.hg38 C3N-02248 CCRCC WXS blood_normal CPT0130830002 bf11277c-5f06-4f58-9429-696e2fdcd6d3_wxs_gdc_realn.bam 32534226616 BAM harmonized CPTAC3 4d00c0fb-a13b-4eca-a753-8e30c3a8ce39 9fc42f43759fcf66ea46b74ff4249c1f {"aliquot_tag": "ALQ_c4ced5fc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02248.WXS.T C3N-02248 CCRCC WXS tumor CPT0129170007 CPT0129170007.WholeExome.RP-1303.bam 25961369013 BAM submitted_aligned CPTAC3 b32ae866-ebc0-4c00-9099-c5f55aa9111c c149e3641d8797991372829a484dcafb {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02248.WXS.T.hg38 C3N-02248 CCRCC WXS tumor CPT0129170007 6c378684-83f3-41ea-988b-68563579d68a_wxs_gdc_realn.bam 35501781737 BAM harmonized CPTAC3 d9cb4944-4535-4223-8542-b0f282b339f0 2586f769d7ebc9b6273b7121df1deb12 {"aliquot_tag": "ALQ_3f199336", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02249.MethArray.Green.T C3N-02249 UCEC Methylation_Array tumor CPT0129080006 203219720203_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a018e92f-8290-4466-93c0-f7e1ffc6e97e 06b44b173c5a8c97cbeb40f49a03eb70 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.MethArray.Red.T C3N-02249 UCEC Methylation_Array tumor CPT0129080006 203219720203_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 22ec344e-9c3d-4115-a43c-b6267641b6c3 5a92da04b5af0c054c25f1914403b363 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.miRNA-Seq.A.hg38 C3N-02249 UCEC miRNA-Seq tissue_normal CPT0129100006 fdc5bd57-bdaf-4bc5-bf27-1a39bc3c7899_mirnaseq_gdc_realn.bam 314939891 BAM harmonized CPTAC3 2814e83a-769f-4e6b-b785-e0813ff51aa0 fa57f16285542b197ed060305b700fc3 {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02249.miRNA-Seq.S17_L004_R1.T C3N-02249 UCEC miRNA-Seq tumor CPT0129080009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTAGAG_S17_L004_R1_001.unaln.bam 163688300 BAM S17_L004_R1 submitted_unaligned CPTAC3 acd52500-7cb8-4acd-b8d3-413042b964f5 938eed547562d2c32d4b675d87c65894 {"aliquot_tag": "ALQ_91adfa45", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.miRNA-Seq.S5_L004_R1.A C3N-02249 UCEC miRNA-Seq tissue_normal CPT0129100006 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L004_R1_001.unaln.bam 277297791 BAM S5_L004_R1 submitted_unaligned CPTAC3 839f88a4-110b-44a9-b23a-21cff0e5ccbb 15dfc0c4449bbf93ce740d28c8389587 {"aliquot_tag": "ALQ_fa3e7fb0", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02249.miRNA-Seq.T.hg38 C3N-02249 UCEC miRNA-Seq tumor CPT0129080009 c290e317-d998-46ec-822f-20e66af2713e_mirnaseq_gdc_realn.bam 177697483 BAM harmonized CPTAC3 468ae25a-fa97-45db-a715-197745b35f1f 2773c64fd06f62a8e0ecfebf9bb45039 {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.chimeric.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.chimeric.gdc_realn.bam 33674896 BAM chimeric harmonized CPTAC3 837fe98b-174d-485f-b6e8-25f5c9f19b4d 021d5e42e9bcbddc206514bf1d0cdefc {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02249.RNA-Seq.chimeric.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.chimeric.gdc_realn.bam 275596259 BAM chimeric harmonized CPTAC3 fce2bab6-0a47-4db0-9452-d33ca3fc4098 a3718ebd3a1a03cd3e3fa0af38432fcd {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.chimeric.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.chimeric.gdc_realn.bam 211272488 BAM chimeric harmonized CPTAC3 b740490d-08c7-4d47-83c5-d2b19b3f6f96 fe22d363c08df87c4ab2a8976bb2b4f6 {"aliquot_tag": "ALQ_593ac3a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.genomic.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.genomic.gdc_realn.bam 8888977801 BAM genomic harmonized CPTAC3 a3774a01-f54e-426c-8983-96720ed22196 0d935ba9347fe91086e70b695fbdefba {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02249.RNA-Seq.genomic.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.genomic.gdc_realn.bam 8640824363 BAM genomic harmonized CPTAC3 411ac7f1-dbfd-40aa-899e-3532239bc893 84e39ac0bcf549c5ac000c0b1b2d7db5 {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.genomic.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.genomic.gdc_realn.bam 10475166913 BAM genomic harmonized CPTAC3 ba3a79d8-13c2-42fc-94ca-543845cf694c 99aaf7658412221e241145f42f65aa3c {"aliquot_tag": "ALQ_593ac3a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.S13_L005_R1.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R1_001.fastq.gz 3833341354 FASTQ S13_L005_R1 submitted_unaligned CPTAC3 89405e08-b72d-4189-939f-c18f88f161a8 f26ecd6c0ccc2e22ed07abb34af1e994 {"aliquot_tag": "ALQ_91adfa45", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.S13_L005_R2.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R2_001.fastq.gz 4307337781 FASTQ S13_L005_R2 submitted_unaligned CPTAC3 8599e40d-9c5e-4ad8-847b-0adc85ff0cfa 7f26f2a0238c0c9e16463fdecea44d0c {"aliquot_tag": "ALQ_91adfa45", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.S4_L007_R1.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3999607005 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 bb3060cb-3d7d-4c8e-95d3-6647be70684f 1a36604aca3a8b914be868509861d860 {"aliquot_tag": "ALQ_fa3e7fb0", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02249.RNA-Seq.S4_L007_R2.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R2_001.fastq.gz 3872848447 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 45c48883-9367-46f1-a9c1-69062f645f0f ae809a2fbf45d4ab06db0ad89b675697 {"aliquot_tag": "ALQ_fa3e7fb0", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02249.RNA-Seq.S58_R1.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R1_001.fastq.gz 6627127489 FASTQ S58_R1 submitted_unaligned CPTAC3 c4f8c3d4-d759-4b58-a9f4-3e62be8ebe73 7ec9f515b03f6529a5bbce7d444bb0e7 {"aliquot_tag": "ALQ_593ac3a3", "sample": "S58", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.S58_R2.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R2_001.fastq.gz 6998254774 FASTQ S58_R2 submitted_unaligned CPTAC3 507fc5ed-98e0-4627-9195-808f424e2f2a 2a45e88db22c6d913a7e1d9d85cc6e49 {"aliquot_tag": "ALQ_593ac3a3", "sample": "S58", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.transcriptome.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.transcriptome.gdc_realn.bam 9378577474 BAM transcriptome harmonized CPTAC3 26c67d64-2d48-43f4-9ec9-33eb6652be1c ec6ff7813e63503e4261694a928ec6e4 {"aliquot_tag": "ALQ_fa3e7fb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02249.RNA-Seq.transcriptome.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.transcriptome.gdc_realn.bam 11008171552 BAM transcriptome harmonized CPTAC3 c8211f4f-34c3-4962-8af9-1c25c94a9711 08358b2991417cdc6dba42e38465a57f {"aliquot_tag": "ALQ_91adfa45", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.RNA-Seq.transcriptome.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.transcriptome.gdc_realn.bam 6650275329 BAM transcriptome harmonized CPTAC3 971c4651-60cd-485b-8a20-d984e177fa78 9d1e06cbbb424034d7a1aa50397c1382 {"aliquot_tag": "ALQ_593ac3a3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.WGS.N C3N-02249 UCEC WGS blood_normal CPT0130810002 CPT0130810002.WholeGenome.RP-1303.bam 62036226534 BAM submitted_aligned CPTAC3 be0e1bfd-d3bd-46c0-8672-83374263a071 bdbd326a215acefa7611884b00ca64ba {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02249.WGS.N.hg38 C3N-02249 UCEC WGS blood_normal CPT0130810002 5df2768a-0e96-490f-bff2-48589110108f_wgs_gdc_realn.bam 92762852447 BAM harmonized CPTAC3 2caf5ea0-a5fa-453c-8fe5-3a681b989632 91c991e4b519e7da6547c8d45426f1c3 {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02249.WGS.T C3N-02249 UCEC WGS tumor CPT0129080006 CPT0129080006.WholeGenome.RP-1303.bam 63847827724 BAM submitted_aligned CPTAC3 0445ef83-e285-447d-8435-3e10687c0cfa 476a6f9242e59ce5e51e2058936978ec {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.WGS.T.hg38 C3N-02249 UCEC WGS tumor CPT0129080006 905ada72-761f-4a71-89bd-5dcabab30043_wgs_gdc_realn.bam 95003721366 BAM harmonized CPTAC3 74445290-cce1-4567-b21c-dcc1be852c2d 8e507e1eafe2e0bf716934b5ec2a6dac {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.WXS.N C3N-02249 UCEC WXS blood_normal CPT0130810002 CPT0130810002.WholeExome.RP-1303.bam 18640172803 BAM submitted_aligned CPTAC3 40b43e49-b995-474e-b4df-6a0a9f15d6af 67ee71b576592b86b61fd44b618bc040 {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02249.WXS.N.hg38 C3N-02249 UCEC WXS blood_normal CPT0130810002 5df2768a-0e96-490f-bff2-48589110108f_wxs_gdc_realn.bam 26107999631 BAM harmonized CPTAC3 a3004536-7812-4441-87b4-72715964efe0 b54b6d75d890033fdad7de630b4a2827 {"aliquot_tag": "ALQ_be0e869c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02249.WXS.T C3N-02249 UCEC WXS tumor CPT0129080006 CPT0129080006.WholeExome.RP-1303.bam 29660379080 BAM submitted_aligned CPTAC3 52c87360-e171-406a-93b0-0c009ffe6aa5 9372846d2382a2b8be91185404543e38 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02249.WXS.T.hg38 C3N-02249 UCEC WXS tumor CPT0129080006 905ada72-761f-4a71-89bd-5dcabab30043_wxs_gdc_realn.bam 40715468971 BAM harmonized CPTAC3 14bbea5c-5660-426a-b291-7990840adcd5 d71821c0960635938a633376e19d7a03 {"aliquot_tag": "ALQ_112e7d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02252.MethArray.Green.A C3N-02252 LSCC Methylation_Array tissue_normal CPT0128900006 203220070082_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ac15e875-0407-4b46-b69c-2688a187e24a b727e06f8f38a08c3cdeb2ece545adb3 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.MethArray.Green.T C3N-02252 LSCC Methylation_Array tumor CPT0128890006 203028200100_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bd1ea576-ce8e-43dc-b6ba-6f45f52d855c 1615a0b6a10187b56d8c85461695f3a0 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.MethArray.Red.A C3N-02252 LSCC Methylation_Array tissue_normal CPT0128900006 203220070082_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 ef0b7b5e-40e4-44c2-9649-adbefcc2e44c 07c20bb231066c577b258555b8c689c6 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.MethArray.Red.T C3N-02252 LSCC Methylation_Array tumor CPT0128890006 203028200100_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 325d4fb2-bca6-4692-9a88-33718fba6459 2ce04f7efe19f4ed250a0752a69cfd69 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.miRNA-Seq.A.hg38 C3N-02252 LSCC miRNA-Seq tissue_normal CPT0128900009 59d6b71d-f3ad-422a-9d42-c185b5acdcd2_mirnaseq_gdc_realn.bam 284191587 BAM harmonized CPTAC3 f2fc9d11-798b-4f78-a9e6-fb999eb6c7b6 2824d2d19a106b094fe64bcd8a3b2435 {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.miRNA-Seq.S15_L001_R1.T C3N-02252 LSCC miRNA-Seq tumor CPT0128890009 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGTCA_S15_L001_R1_001.unaln.bam 270776214 BAM S15_L001_R1 submitted_unaligned CPTAC3 bb400b90-2ebf-4adc-9e11-098aa530fb2d 1a2d0c25e19412b0139347d34e4d4333 {"aliquot_tag": "ALQ_e6e95a2c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.miRNA-Seq.S45_L002_R1.A C3N-02252 LSCC miRNA-Seq tissue_normal CPT0128900009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCCCGA_S45_L002_R1_001.unaln.bam 254428699 BAM S45_L002_R1 submitted_unaligned CPTAC3 aefaf1f7-d49a-4e66-95c8-1aa20c2ffd5b f0463925dbdb7d099771b60b991b9f06 {"aliquot_tag": "ALQ_20a5ebf8", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.miRNA-Seq.T.hg38 C3N-02252 LSCC miRNA-Seq tumor CPT0128890009 bc3e8791-f273-45a9-be00-b7afc414e491_mirnaseq_gdc_realn.bam 295002464 BAM harmonized CPTAC3 00eccc28-6c40-4bbc-873f-dbdf405bf700 e6dddc9a3b9eef821d0adf794d1fa150 {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.RNA-Seq.chimeric.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.chimeric.gdc_realn.bam 27006368 BAM chimeric harmonized CPTAC3 e96000ab-c167-48a0-8609-3631a44e1f95 834afc5a1e832c4f85a88a91566f4fcd {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.RNA-Seq.chimeric.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.chimeric.gdc_realn.bam 29333169 BAM chimeric harmonized CPTAC3 3b9cbe96-499c-4e38-a047-7720850581bf ae7b67ceb9b7515c973458b3ef2d6cdc {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.RNA-Seq.genomic.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.genomic.gdc_realn.bam 7566955755 BAM genomic harmonized CPTAC3 536893d0-5137-4250-ae88-612313b9b2af 69b1238831234566f7282d0629e665eb {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.RNA-Seq.genomic.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.genomic.gdc_realn.bam 9441485426 BAM genomic harmonized CPTAC3 eca9cac6-140a-4e8e-8e4c-c9a5cf9ead34 5088d18a4acdd8122047917158a02cc2 {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.RNA-Seq.S31_L008_R1.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R1_001.fastq.gz 3998347361 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 0a22da20-b273-4596-a20d-078203ca6af0 d5dec3e669ad83768a3ccc74805d99ab {"aliquot_tag": "ALQ_e6e95a2c", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.RNA-Seq.S31_L008_R2.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R2_001.fastq.gz 4274121804 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 4e9b93f7-0b11-4435-a726-c00303a07aad 3d71de8230414780ea030cb707fa42d1 {"aliquot_tag": "ALQ_e6e95a2c", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.RNA-Seq.S6_L008_R1.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3296410991 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 b1be224d-7636-4277-b075-1c6022411068 4e3cff56c74b14257c532c85f820ede9 {"aliquot_tag": "ALQ_20a5ebf8", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.RNA-Seq.S6_L008_R2.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3391249468 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 8ce1fdd3-9efa-4b03-acea-96306e5a5e05 3ff4fac54a0f96768c1bc8ce99c0b553 {"aliquot_tag": "ALQ_20a5ebf8", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.RNA-Seq.transcriptome.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.transcriptome.gdc_realn.bam 8162678110 BAM transcriptome harmonized CPTAC3 de7bc5aa-6cbb-450c-bf9a-e1d56c4e74ff 0026133edab7880ee15195af04adfa0e {"aliquot_tag": "ALQ_20a5ebf8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.RNA-Seq.transcriptome.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.transcriptome.gdc_realn.bam 10514509937 BAM transcriptome harmonized CPTAC3 2031e087-3be7-4d20-a443-112df8266820 b85d6deadf0d3ad702d42b91bc4f431f {"aliquot_tag": "ALQ_e6e95a2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.WGS.A C3N-02252 LSCC WGS tissue_normal CPT0128900006 CPT0128900006.WholeGenome.RP-1303.bam 61334719204 BAM submitted_aligned CPTAC3 7029525e-de98-4bf0-a138-f6e01eb64d9b 030705b67f56877eb1ae179596c64cf1 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.WGS.A.hg38 C3N-02252 LSCC WGS tissue_normal CPT0128900006 7c1392b8-94e4-4e62-a218-a8daa0dfb70d_wgs_gdc_realn.bam 88614410446 BAM harmonized CPTAC3 a0c2ec20-9db9-49a7-a91c-3f7c2865d4c3 aa1ceca44992ab1bfd1583fc044d220e {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.WGS.N C3N-02252 LSCC WGS blood_normal CPT0130770002 CPT0130770002.WholeGenome.RP-1303.bam 59026066739 BAM submitted_aligned CPTAC3 6daf662a-761d-4ddc-bb7d-327a4607e94f 7e1cdfb8eb5456d616888a52a02cd724 {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02252.WGS.N.hg38 C3N-02252 LSCC WGS blood_normal CPT0130770002 c76b462a-1b74-4cbc-aa4f-18ba1c67ddee_wgs_gdc_realn.bam 84828954077 BAM harmonized CPTAC3 b26fa50b-ea4b-4324-8212-9c001c8e3b95 8e2a219915bac51916e850723d3ff407 {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02252.WGS.T C3N-02252 LSCC WGS tumor CPT0128890006 CPT0128890006.WholeGenome.RP-1303.bam 63058779701 BAM submitted_aligned CPTAC3 16959a62-07c7-400d-9dd4-7e5afaf2cf5f c066c4e8f974a602a7f10db3f07a5bdd {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.WGS.T.hg38 C3N-02252 LSCC WGS tumor CPT0128890006 ebfc2cd0-54b0-4dba-afd4-a9b59f7e5706_wgs_gdc_realn.bam 90455600189 BAM harmonized CPTAC3 1c9fb5ca-e390-4366-a48c-2570ad65020b 789dd36aab728e654ace1e5cfd794e61 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.WXS.A C3N-02252 LSCC WXS tissue_normal CPT0128900006 CPT0128900006.WholeExome.RP-1303.bam 23600045099 BAM submitted_aligned CPTAC3 051a7092-bffd-4650-8e9e-e9b57ed3e68e 98f8c4f583b0f1a1fa9d8594838e43d0 {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.WXS.A.hg38 C3N-02252 LSCC WXS tissue_normal CPT0128900006 7c1392b8-94e4-4e62-a218-a8daa0dfb70d_wxs_gdc_realn.bam 32794669274 BAM harmonized CPTAC3 dbb09bcc-213c-4d65-82e9-d6991bd282bb 0b5f29cf5da37ffd34381b068ca2cc4f {"aliquot_tag": "ALQ_b01af669", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02252.WXS.N C3N-02252 LSCC WXS blood_normal CPT0130770002 CPT0130770002.WholeExome.RP-1303.bam 17088732464 BAM submitted_aligned CPTAC3 f8a488a2-8845-44b5-9521-3faae3da9e34 7502204e0c06f63490e6a13459e1a45f {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02252.WXS.N.hg38 C3N-02252 LSCC WXS blood_normal CPT0130770002 c76b462a-1b74-4cbc-aa4f-18ba1c67ddee_wxs_gdc_realn.bam 24342884232 BAM harmonized CPTAC3 66ed598c-f43d-44a5-b496-af4330c65856 af2f09a997c097e81357f33606efc669 {"aliquot_tag": "ALQ_c018c1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02252.WXS.T C3N-02252 LSCC WXS tumor CPT0128890006 CPT0128890006.WholeExome.RP-1303.bam 29047996848 BAM submitted_aligned CPTAC3 fffa7e41-dfa6-487d-8ee8-05bb2638aa74 c66f916b4fe2a9c523e059251fbbefc0 {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02252.WXS.T.hg38 C3N-02252 LSCC WXS tumor CPT0128890006 ebfc2cd0-54b0-4dba-afd4-a9b59f7e5706_wxs_gdc_realn.bam 40206707767 BAM harmonized CPTAC3 6619382f-fd6d-40f0-9609-dd57af52995f c3fb1fab772af32b7643d5fa2a919e7c {"aliquot_tag": "ALQ_765647bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02253.MethArray.Green.T C3N-02253 UCEC Methylation_Array tumor CPT0128770006 203219650100_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 33371e76-f478-4c85-a70d-6e34663a730b 53aaa24b09710d4eac5a722aabd65df4 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.MethArray.Red.T C3N-02253 UCEC Methylation_Array tumor CPT0128770006 203219650100_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 fea5aa62-144f-4d7f-9bdb-242676b3ee97 e08df5bbdf33984d1eda68608fb79673 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.miRNA-Seq.A.hg38 C3N-02253 UCEC miRNA-Seq tissue_normal CPT0128800009 9239fe3a-631d-42a0-b522-8d2996efad50_mirnaseq_gdc_realn.bam 325331554 BAM harmonized CPTAC3 6951d97f-657f-41d5-bd3a-c8e3a499af08 700868f7b9ec089bf97981e6731664a5 {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.miRNA-Seq.S15_L004_R1.T C3N-02253 UCEC miRNA-Seq tumor CPT0128770009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGTCA_S15_L004_R1_001.unaln.bam 177132841 BAM S15_L004_R1 submitted_unaligned CPTAC3 a99d00b9-2c9e-4d19-9f44-64cb7d6e2c85 eda35a763a70c15add737ba34616c359 {"aliquot_tag": "ALQ_a88f5698", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.miRNA-Seq.S4_L004_R1.A C3N-02253 UCEC miRNA-Seq tissue_normal CPT0128800009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L004_R1_001.unaln.bam 283891059 BAM S4_L004_R1 submitted_unaligned CPTAC3 0336b4d1-be54-4cc7-92fa-66dff53c4bb3 ff9474b11fc1b96fd0ac799114d3d3ef {"aliquot_tag": "ALQ_ebf9385d", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.miRNA-Seq.T.hg38 C3N-02253 UCEC miRNA-Seq tumor CPT0128770009 480da82d-c89a-41f8-b993-905ccbb8ccb8_mirnaseq_gdc_realn.bam 192338554 BAM harmonized CPTAC3 1899fb65-90a8-4958-80a7-e4d35114a854 9577d45549da87ca115fc57f9241c6bf {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.chimeric.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.chimeric.gdc_realn.bam 39589055 BAM chimeric harmonized CPTAC3 e60127df-9aac-45c4-a428-d4fc5b60b99f 15351035ba41801de66a2b704e7e1b5a {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.RNA-Seq.chimeric.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.chimeric.gdc_realn.bam 39885081 BAM chimeric harmonized CPTAC3 e6fcc2ff-36ac-4efb-808c-5b774f41cc58 41183c80564da5c37c7a3876b8a05c90 {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.chimeric.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.chimeric.gdc_realn.bam 204348895 BAM chimeric harmonized CPTAC3 6789eb1a-d256-424c-818f-f624a3deec57 c0734cb6b049e8ab0340a1400b4013a1 {"aliquot_tag": "ALQ_d84299df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.genomic.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.genomic.gdc_realn.bam 9281535714 BAM genomic harmonized CPTAC3 f99cd6a0-b339-4c45-a922-2f1ae6fa9972 fee26381b9e0745c1d935539d149f86a {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.RNA-Seq.genomic.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.genomic.gdc_realn.bam 8303564555 BAM genomic harmonized CPTAC3 053a265c-e798-408a-ac59-734ebf9e340a 161a4a695a9d19093ab237f90e01d351 {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.genomic.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.genomic.gdc_realn.bam 10433836124 BAM genomic harmonized CPTAC3 392491e6-0df5-424b-8929-6db795811038 35a8961fc08e82204c908c2b9c382f73 {"aliquot_tag": "ALQ_d84299df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.S11_L004_R1.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R1_001.fastq.gz 3679101999 FASTQ S11_L004_R1 submitted_unaligned CPTAC3 e71a2ecf-dd81-47f5-a063-d79e0bc6e1bf dc2b401cd30ed69c333f16b85aa6dea2 {"aliquot_tag": "ALQ_a88f5698", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.S11_L004_R2.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R2_001.fastq.gz 3987206525 FASTQ S11_L004_R2 submitted_unaligned CPTAC3 41124954-da18-4aae-84f8-046f67939d4d bf5ec741a794918b7a53a1517823b12a {"aliquot_tag": "ALQ_a88f5698", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.S1_L007_R1.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3856850625 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 c57ca5e7-a9e1-429c-8ee6-4bbb2c89cbb2 9eb34101c00f7a77cdae7dfbcd1dcb4f {"aliquot_tag": "ALQ_ebf9385d", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.RNA-Seq.S1_L007_R2.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 3785256286 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 98a946ed-681d-4a9f-82a1-2bdbdb4a9054 837e74693b353908acdaacef4dfe7ef3 {"aliquot_tag": "ALQ_ebf9385d", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.RNA-Seq.S34_R1.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R1_001.fastq.gz 6115737040 FASTQ S34_R1 submitted_unaligned CPTAC3 20508caa-5e1b-4467-b0ce-2aa137fdd866 774df2594c817af8532deaf70a431c1b {"aliquot_tag": "ALQ_d84299df", "sample": "S34", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.S34_R2.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R2_001.fastq.gz 6304294811 FASTQ S34_R2 submitted_unaligned CPTAC3 861aa769-44fc-4901-9225-569323863452 03f2f1528f99ce4487743ceb79a20459 {"aliquot_tag": "ALQ_d84299df", "sample": "S34", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.transcriptome.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.transcriptome.gdc_realn.bam 9199817027 BAM transcriptome harmonized CPTAC3 8b0b6e12-c8d3-4297-90f5-abb8d658f549 5835924b7c7d95105d869cd1cb6e7182 {"aliquot_tag": "ALQ_ebf9385d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.RNA-Seq.transcriptome.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.transcriptome.gdc_realn.bam 9951404581 BAM transcriptome harmonized CPTAC3 6e0e95be-abbf-4ab0-8a6a-7d3ad1467e92 c281660d1c4290fef693399857246614 {"aliquot_tag": "ALQ_a88f5698", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.RNA-Seq.transcriptome.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.transcriptome.gdc_realn.bam 5668466188 BAM transcriptome harmonized CPTAC3 747362f5-1ac3-4a5b-933f-b901674e76c4 440cf9ff4f042b05c95dcdab5cf0bf1c {"aliquot_tag": "ALQ_d84299df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.WGS.N C3N-02253 UCEC WGS blood_normal CPT0130760002 CPT0130760002.WholeGenome.RP-1303.bam 65021028979 BAM submitted_aligned CPTAC3 fd595034-4369-4135-b6a8-0d80be00d4f6 deb1478032d108cae603d2a1e76cc9c0 {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02253.WGS.N.hg38 C3N-02253 UCEC WGS blood_normal CPT0130760002 0ba84a92-8c3f-4d2f-b252-94f19d64ac7f_wgs_gdc_realn.bam 95128194201 BAM harmonized CPTAC3 9593cfb4-8def-403d-a65c-f798f7b9c9b8 334b0a7a55e0f324cb51b546be9d624f {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02253.WGS.T C3N-02253 UCEC WGS tumor CPT0128770006 CPT0128770006.WholeGenome.RP-1303.bam 52960537428 BAM submitted_aligned CPTAC3 2659fab8-3423-4ace-aebe-307e9bc19cff 3e44650c27ca019dccc7a1abffb5d5f5 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.WGS.T.hg38 C3N-02253 UCEC WGS tumor CPT0128770006 64ed7413-de86-4851-b0ef-e47aa17f1a3c_wgs_gdc_realn.bam 78318568643 BAM harmonized CPTAC3 f5df1921-8e4c-4622-a276-f50b13cdf1a5 d3605b2d07937c88617abf3a2080eb1e {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.WXS.A C3N-02253 UCEC WXS tissue_normal CPT0128800006 CPT0128800006.WholeExome.RP-1303.bam 21995186024 BAM submitted_aligned CPTAC3 ddf7338b-2336-4c1c-b180-9ca7b449acfd 964861fa0d874f458027be85b2495c2d {"aliquot_tag": "ALQ_7b4625cc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.WXS.A.hg38 C3N-02253 UCEC WXS tissue_normal CPT0128800006 b48be8e6-8b97-4641-a7ca-c5ffc7a53f10_wxs_gdc_realn.bam 30453273156 BAM harmonized CPTAC3 3b64b62d-21d2-4838-8e49-ed01c6ec15a9 5a5d06c38732bdd612397e63bdfb5f2f {"aliquot_tag": "ALQ_7b4625cc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02253.WXS.N C3N-02253 UCEC WXS blood_normal CPT0130760002 CPT0130760002.WholeExome.RP-1303.bam 27398483174 BAM submitted_aligned CPTAC3 72eff54a-8bc6-4ef0-9a1d-683a1b44e870 82b46cb644bd4fe272374be522a04721 {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02253.WXS.N.hg38 C3N-02253 UCEC WXS blood_normal CPT0130760002 0ba84a92-8c3f-4d2f-b252-94f19d64ac7f_wxs_gdc_realn.bam 37469563437 BAM harmonized CPTAC3 7a99151d-dd54-4eb7-a3a5-a985d6645a05 4efbf23657609cdc0247c973d901b4bc {"aliquot_tag": "ALQ_fd78e859", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02253.WXS.T C3N-02253 UCEC WXS tumor CPT0128770006 CPT0128770006.WholeExome.RP-1303.bam 27171303951 BAM submitted_aligned CPTAC3 87f70cbd-fc53-4fd3-87ef-b2ebb5b8c79e a014297c8a32a9f354cb729b7dfd10bb {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02253.WXS.T.hg38 C3N-02253 UCEC WXS tumor CPT0128770006 64ed7413-de86-4851-b0ef-e47aa17f1a3c_wxs_gdc_realn.bam 37789502329 BAM harmonized CPTAC3 559bf42c-2893-46fc-9037-6560fb9fada4 f3519b30e2f169dc4d79e35e22faa9d7 {"aliquot_tag": "ALQ_38304b09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02255.MethArray.Green.T C3N-02255 GBM Methylation_Array tumor CPT0182550006 203271750083_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1e29408e-0159-4f7d-8689-426882b806ed 527379f8049e1a6989a083738d4e862b {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.MethArray.Red.T C3N-02255 GBM Methylation_Array tumor CPT0182550006 203271750083_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 f2231f6a-a57d-427d-a806-faa92a759754 0ec2ce19778381db271f0b316ee90cf5 {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.miRNA-Seq.S5_L003_R1.T C3N-02255 GBM miRNA-Seq tumor CPT0182550009 181219_UNC31-K00269_0173_BHYGJJBBXX_ACAGTG_S5_L003_R1_001.unaln.bam 312009928 BAM S5_L003_R1 submitted_unaligned CPTAC3 5182d41d-57f1-4726-8c6a-d25544d9a67c 89d5b9bcdde1b9fa47569e2e0d1c7a28 {"aliquot_tag": "ALQ_aa37e775", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.miRNA-Seq.T.hg38 C3N-02255 GBM miRNA-Seq tumor CPT0182550009 dcc3b395-59e5-41fa-aacd-d6d634f890d3_mirnaseq_gdc_realn.bam 353657463 BAM harmonized CPTAC3 cea65a8d-f014-48c9-bdea-3b924ae84479 95df2511b179575d1033ce3be20a6443 {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.RNA-Seq.chimeric.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.chimeric.gdc_realn.bam 142383156 BAM chimeric harmonized CPTAC3 7e28cbad-5618-45a0-a0dc-539fd39cd4f9 8a8c664649c98025cd1b16369c973c4b {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.RNA-Seq.genomic.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.genomic.gdc_realn.bam 7736897389 BAM genomic harmonized CPTAC3 d417852d-f81d-43f4-8f88-60b672a1be1c c46d2e6574f5833e757b49a175521ce4 {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.RNA-Seq.S7_L002_R1.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3704735928 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 6ddd2ee9-f842-40ce-9ae4-9a0a2c165f11 75aa8bfab2a44f54f7f8ae6cc2f7cb06 {"aliquot_tag": "ALQ_aa37e775", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.RNA-Seq.S7_L002_R2.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3951356121 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 93c7ca01-341f-4072-a3b1-aee0d1b9acda dd1d9e95c40c5c30ba71ed8c13814b8c {"aliquot_tag": "ALQ_aa37e775", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.RNA-Seq.transcriptome.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.transcriptome.gdc_realn.bam 8285152573 BAM transcriptome harmonized CPTAC3 f1f6f2a4-ca73-4866-9060-b7fca2d60ab8 731e92c31c134944ae14219653fd7442 {"aliquot_tag": "ALQ_aa37e775", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.WGS.N C3N-02255 GBM WGS blood_normal CPT0182570002 CPT0182570002.WholeGenome.RP-1303.bam 55148462856 BAM submitted_aligned CPTAC3 727a41a7-7dfe-4899-acfa-6a61c64e3343 68e61783c60a1665786eb13c9181e797 {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02255.WGS.N.hg38 C3N-02255 GBM WGS blood_normal CPT0182570002 49118b25-320a-4b67-abf6-7c7907ee1533_wgs_gdc_realn.bam 80547533085 BAM harmonized CPTAC3 1e62907e-480f-4908-a82d-c54833da83c9 79545754bb61f78d8c48f7921a8a996a {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02255.WGS.T C3N-02255 GBM WGS tumor CPT0182550006 CPT0182550006.WholeGenome.RP-1303.bam 64400621366 BAM submitted_aligned CPTAC3 f1495c0f-55f5-49fd-aeeb-48fae434bd68 7c6d3f860c6fe9b781ab5191534a8964 {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.WGS.T.hg38 C3N-02255 GBM WGS tumor CPT0182550006 867ec78e-ed0c-4563-a551-f460cde652c4_wgs_gdc_realn.bam 94524074122 BAM harmonized CPTAC3 5cb100a4-5e0f-4a51-ba46-18be1e58160a e29f278dd652bef99aa9148014c81275 {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.WXS.N C3N-02255 GBM WXS blood_normal CPT0182570002 CPT0182570002.WholeExome.RP-1303.bam 26295527716 BAM submitted_aligned CPTAC3 55257136-9685-4399-b095-5370f7e68434 00a874e06a3106fae92a483ec8e1ae9e {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02255.WXS.N.hg38 C3N-02255 GBM WXS blood_normal CPT0182570002 49118b25-320a-4b67-abf6-7c7907ee1533_wxs_gdc_realn.bam 36265766002 BAM harmonized CPTAC3 adcc17ae-cf95-4352-9db6-66f4243c90c2 e1d42ef21141f9ef46687c5871177ca8 {"aliquot_tag": "ALQ_47256d9d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02255.WXS.T C3N-02255 GBM WXS tumor CPT0182550006 CPT0182550006.WholeExome.RP-1303.bam 27814633375 BAM submitted_aligned CPTAC3 4feea2de-cf18-4307-ab77-3c37ccdb7465 8940036312691eeb7c134a799782c9ab {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02255.WXS.T.hg38 C3N-02255 GBM WXS tumor CPT0182550006 867ec78e-ed0c-4563-a551-f460cde652c4_wxs_gdc_realn.bam 38850615020 BAM harmonized CPTAC3 e05748a2-dca0-4cd2-a77b-e8fb48551632 f6c6688c087a22aec2d5f13774bfbc8e {"aliquot_tag": "ALQ_3a88fae4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.MethArray.Green.T C3N-02256 GBM Methylation_Array tumor CPT0182580006 203219650217_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 67719bc1-5682-41be-85a0-9e7cc7d3b353 01fae0017c2022ae5da8b8119fe111a1 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.MethArray.Red.T C3N-02256 GBM Methylation_Array tumor CPT0182580006 203219650217_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 c3d026f2-f6a4-4db3-80b5-ba703a27f212 0f66ac996e44d30049fc19375ce09ebe {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.miRNA-Seq.S6_L003_R1.T C3N-02256 GBM miRNA-Seq tumor CPT0182580009 181219_UNC31-K00269_0173_BHYGJJBBXX_GCCAAT_S6_L003_R1_001.unaln.bam 273657756 BAM S6_L003_R1 submitted_unaligned CPTAC3 517be51e-f72f-450e-a512-2ca6c3375efc fa366322bb6a684be83b71fa716477b3 {"aliquot_tag": "ALQ_52a723c4", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.miRNA-Seq.T.hg38 C3N-02256 GBM miRNA-Seq tumor CPT0182580009 61b363bf-d56a-49c8-b14c-4c6b8c7ddd4c_mirnaseq_gdc_realn.bam 305916167 BAM harmonized CPTAC3 ee6d3343-1de8-4403-a3f5-f34d6d828956 774ac13d34fff6dd5058822de4374a42 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.RNA-Seq.chimeric.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.chimeric.gdc_realn.bam 146882379 BAM chimeric harmonized CPTAC3 a1d8bfa9-39c9-4541-9d39-ef36308442e0 af414fbbacfc01f0bd4a68beba989bd9 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.RNA-Seq.genomic.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.genomic.gdc_realn.bam 9227007710 BAM genomic harmonized CPTAC3 82344652-78af-4786-a2d1-aae64753de41 e4e37838b3ea463fff78a3799b1b6a27 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.RNA-Seq.S8_L002_R1.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R1_001.fastq.gz 4445956614 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 88d33533-fe80-485b-a2b7-a81ff8729921 3a2a94ceb35a242118341130a39be4f8 {"aliquot_tag": "ALQ_52a723c4", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.RNA-Seq.S8_L002_R2.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R2_001.fastq.gz 4826728081 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 7855be61-2390-40e0-8b9a-54eb82b0de93 207325214f7d5425cd7c4e7d8719604d {"aliquot_tag": "ALQ_52a723c4", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.RNA-Seq.transcriptome.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.transcriptome.gdc_realn.bam 11891831094 BAM transcriptome harmonized CPTAC3 d2c10245-d204-4533-8629-17162d73ff7c 86a0107b9773036c080b40801a48e015 {"aliquot_tag": "ALQ_52a723c4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.WGS.N C3N-02256 GBM WGS blood_normal CPT0182600002 CPT0182600002.WholeGenome.RP-1303.bam 62174645424 BAM submitted_aligned CPTAC3 30b0e8e5-6cb3-4357-91ef-4cc009a56349 798d5f4ce5ac1e09277e4dfadb973204 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02256.WGS.N.hg38 C3N-02256 GBM WGS blood_normal CPT0182600002 75eeaabd-f938-4f59-afb4-31dd6341c6ff_wgs_gdc_realn.bam 90940565795 BAM harmonized CPTAC3 138d8c4d-3a80-49ef-83fd-6bd8d8677c2a 1940dc7397abd8a478171f8295850106 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02256.WGS.T C3N-02256 GBM WGS tumor CPT0182580006 CPT0182580006.WholeGenome.RP-1303.bam 63526398489 BAM submitted_aligned CPTAC3 0b88a65f-0f8b-4e02-ae4c-3a9aafb3c5be 7603b51ec58ae2e9dad738e5b5560aa0 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.WGS.T.hg38 C3N-02256 GBM WGS tumor CPT0182580006 24815b9c-b5a1-4855-b8d2-116875c5c1bb_wgs_gdc_realn.bam 91919707825 BAM harmonized CPTAC3 29ac1663-e57e-4012-aa22-c73193db7907 782997cbb8aa05b0bb8af41c5e7ad10e {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.WXS.N C3N-02256 GBM WXS blood_normal CPT0182600002 CPT0182600002.WholeExome.RP-1303.bam 31413307624 BAM submitted_aligned CPTAC3 9b8205c3-d8d0-429d-afc4-26e7c95358aa b8254c1449f9b326ccb9f1f333b8c4b9 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02256.WXS.N.hg38 C3N-02256 GBM WXS blood_normal CPT0182600002 75eeaabd-f938-4f59-afb4-31dd6341c6ff_wxs_gdc_realn.bam 44430024764 BAM harmonized CPTAC3 8fef8636-d43f-4194-85bc-d2e3f909b35b 0266bd028bdee946da16885bcb20eb33 {"aliquot_tag": "ALQ_7391c323", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02256.WXS.T C3N-02256 GBM WXS tumor CPT0182580006 CPT0182580006.WholeExome.RP-1303.bam 31235876071 BAM submitted_aligned CPTAC3 2e7037df-652f-465f-b1f4-5d8477549946 3699a97cdc8334c4730352dc23d35964 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02256.WXS.T.hg38 C3N-02256 GBM WXS tumor CPT0182580006 24815b9c-b5a1-4855-b8d2-116875c5c1bb_wxs_gdc_realn.bam 43176616847 BAM harmonized CPTAC3 1cd0c99e-d459-4861-a878-2dbb06a8c223 793c4f734a90ac35a1312c3c7d7dc190 {"aliquot_tag": "ALQ_c2183e55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02259.MethArray.Green.T C3N-02259 GBM Methylation_Array tumor CPT0244830006 204372030070_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9b67246b-9a1e-43e4-925e-368e44840d2b d0bfe6b625037c679504d229ebc943fe {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.MethArray.Red.T C3N-02259 GBM Methylation_Array tumor CPT0244830006 204372030070_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 6391abdd-786e-4c87-a3fb-afad3b1052ba 1b19c24d2316f9a21c80ff1fce9d0c4d {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.miRNA-Seq.S40_L008_R1.T C3N-02259 GBM miRNA-Seq tumor CPT0244830013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTCAGA_S40_L008_R1_001.unaln.bam 167476066 BAM S40_L008_R1 submitted_unaligned CPTAC3 aa27227b-33ff-4471-b8dd-1b0e68037e2b 11cfc1a989f3e0986ed2a0436c7808ff {"aliquot_tag": "ALQ_6dd5c5e4", "sample": "S40", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.miRNA-Seq.T.hg38 C3N-02259 GBM miRNA-Seq tumor CPT0244830013 2229bd80-e569-43c6-a683-c0b2b29de25d_mirnaseq_gdc_realn.bam 184461994 BAM harmonized CPTAC3 97c8d814-ca7e-4c7e-976e-ee8a45b06e39 57d5afcc2fae00d2c0fc72cc41159a99 {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.RNA-Seq.chimeric.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.chimeric.gdc_realn.bam 29036519 BAM chimeric harmonized CPTAC3 45fb311b-80d5-4644-be72-0685ec2832ba cbe488a2e90266efe9f4bf24291c234e {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.RNA-Seq.genomic.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.genomic.gdc_realn.bam 7622139540 BAM genomic harmonized CPTAC3 828f02b1-0b7b-4249-af9e-6d094313676b 68d20bcf5d4d6585fde881ea3bce406e {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.RNA-Seq.S67_L008_R1.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R1_001.fastq.gz 3685625755 FASTQ S67_L008_R1 submitted_unaligned CPTAC3 611120e0-9d64-40e8-ad9f-7a7ae8092067 fea2f4e7d6e1c9406c7a22597c1b298e {"aliquot_tag": "ALQ_6dd5c5e4", "sample": "S67", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.RNA-Seq.S67_L008_R2.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ S67_L008_R2 submitted_unaligned CPTAC3 11e7d48b-1bfe-4892-8eca-6a22a1b8649a 6f5dee400ccd322466f6252db61a961c {"aliquot_tag": "ALQ_6dd5c5e4", "sample": "S67", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.RNA-Seq.transcriptome.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.transcriptome.gdc_realn.bam 9328409186 BAM transcriptome harmonized CPTAC3 41901d5d-dce6-4fe8-8582-d54fb6ae0e3d 17aa8c9dd88f9c1bf6e32c422535c514 {"aliquot_tag": "ALQ_6dd5c5e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.WGS.N C3N-02259 GBM WGS blood_normal CPT0244850002 CPT0244850002.WholeGenome.RP-2158.bam 22539611729 BAM submitted_aligned CPTAC3 651f92d8-0c95-45bc-a251-3dabda9b9c3e fe9cbb6d65312b4df2c3020df2f1feac {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02259.WGS.N.hg38 C3N-02259 GBM WGS blood_normal CPT0244850002 6ba5ae6a-aa56-4806-b46b-c46b0169f107_wgs_gdc_realn.bam 65671654026 BAM harmonized CPTAC3 80bd2584-7377-4a12-b6e7-e6f329974607 12cb4b76e3a68660e5d8b249761f219a {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02259.WGS.T C3N-02259 GBM WGS tumor CPT0244830006 CPT0244830006.WholeGenome.RP-2158.bam 22620549920 BAM submitted_aligned CPTAC3 ca024786-6ce2-4a4c-9f7d-c54c9d4221c2 3c2ede46a0b1c99900ad79edb284d398 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.WGS.T.hg38 C3N-02259 GBM WGS tumor CPT0244830006 e14a46ba-704d-4e84-876e-46569248569c_wgs_gdc_realn.bam 67217998804 BAM harmonized CPTAC3 9ab46c4f-c4af-4fba-aa78-9a124221b6a3 53af72edb281dcebc00df3933c8c8aa9 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.WXS.N C3N-02259 GBM WXS blood_normal CPT0244850002 CPT0244850002.WholeExome.RP-1303.bam 23358305597 BAM submitted_aligned CPTAC3 1eb497b2-eed1-45bb-b46b-a6963d996134 9573158a4ec44c1701a082532bde38a5 {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02259.WXS.N.hg38 C3N-02259 GBM WXS blood_normal CPT0244850002 6ba5ae6a-aa56-4806-b46b-c46b0169f107_wxs_gdc_realn.bam 30780507901 BAM harmonized CPTAC3 4e909555-b3b3-4165-bfb3-76380c7e964e cb3bd5f416de5dc7948fd159730a4091 {"aliquot_tag": "ALQ_8c893193", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02259.WXS.T C3N-02259 GBM WXS tumor CPT0244830006 CPT0244830006.WholeExome.RP-1303.bam 23855654353 BAM submitted_aligned CPTAC3 71da1801-69f7-40c3-8e26-961f3326e2c0 def4887c4dd8f894577c3b6f7eea2639 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02259.WXS.T.hg38 C3N-02259 GBM WXS tumor CPT0244830006 e14a46ba-704d-4e84-876e-46569248569c_wxs_gdc_realn.bam 33697360977 BAM harmonized CPTAC3 2a83fa0d-8c52-4120-a68e-ed04ee910d99 987e3afebfb4fe645bd629dfec7dac26 {"aliquot_tag": "ALQ_4a4002a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.MethArray.Green.A C3N-02261 CCRCC Methylation_Array tissue_normal CPT0381600009 205589730117_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8070acff-3c77-4c4c-86af-395902462b88 731c382fd857dbf5ef7f7a4608569bb5 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.MethArray.Green.T C3N-02261 CCRCC Methylation_Array tumor CPT0381550009 205549600088_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 f869f8cf-bcb8-4cdf-affb-efb5054545c3 b33fe35604f31b755f0ebc8d24eb34d6 {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.MethArray.Red.A C3N-02261 CCRCC Methylation_Array tissue_normal CPT0381600009 205589730117_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 647f7451-d5a5-4a48-b5ca-d914d4920fd7 86101196d51769cec7b3afe828307839 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.MethArray.Red.T C3N-02261 CCRCC Methylation_Array tumor CPT0381550009 205549600088_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 2c4ba4a9-b1d2-4e9b-b20a-2198a6c1d8a0 60c13bca87a3cd1bb35799c9da982774 {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.miRNA-Seq.A.hg38 C3N-02261 CCRCC miRNA-Seq tissue_normal CPT0381600006 74919460-7a84-446c-b4d1-a87e92f22ebf_mirnaseq_gdc_realn.bam 257740456 BAM harmonized CPTAC3 65996faf-3402-46d2-86ee-b09eeba4858a 910e161f0a38ba3549c04037a2113700 {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.miRNA-Seq.S3_L001_R1.T C3N-02261 CCRCC miRNA-Seq tumor CPT0381550006 210111_UNC32-K00270_0270_AHJ5LKBBXY_AGTTCC_S3_L001_R1_001.unaln.bam 290238407 BAM S3_L001_R1 submitted_unaligned CPTAC3 2c91d7f9-60b7-42ef-8162-b5bfbd1190a7 07f0c8cf53af77725edc597cc4d3d326 {"aliquot_tag": "ALQ_2596c8ff", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.miRNA-Seq.S5_L001_R1.A C3N-02261 CCRCC miRNA-Seq tissue_normal CPT0381600006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATGTCA_S5_L001_R1_001.unaln.bam 235490229 BAM S5_L001_R1 submitted_unaligned CPTAC3 b2a532d8-eca6-4d6a-9290-fe5787877590 4bc48159b30d7b14a8ea41c7ca1698cb {"aliquot_tag": "ALQ_6be23521", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.miRNA-Seq.T.hg38 C3N-02261 CCRCC miRNA-Seq tumor CPT0381550006 e954a129-7d0c-4c7f-90e6-760f531c02cf_mirnaseq_gdc_realn.bam 310243974 BAM harmonized CPTAC3 67146395-2ed8-48cd-9bed-4152114bc544 b82ad165fb625a11d1347773de8b3a52 {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.RNA-Seq.chimeric.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.chimeric.gdc_realn.bam 393937091 BAM chimeric harmonized CPTAC3 c10d2309-b2d6-4a8b-875e-43cb66ce210d 24b0315e7fd8ff58e2b94009e579420a {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.RNA-Seq.chimeric.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.chimeric.gdc_realn.bam 341106313 BAM chimeric harmonized CPTAC3 93755e53-ed0b-49a2-b067-4b13334dae32 485eb458e9aafb627410930d260d2f4f {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.RNA-Seq.genomic.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.genomic.gdc_realn.bam 8132970039 BAM genomic harmonized CPTAC3 a123415e-841f-496c-bb99-4665091118ca bf5eee740ab41276071b64bbcb1d4f03 {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.RNA-Seq.genomic.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.genomic.gdc_realn.bam 7880672677 BAM genomic harmonized CPTAC3 873cbba5-d15c-4553-aa75-1024204806db b5b9ea8cf9fb085d1e167d4860328c45 {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.RNA-Seq.S23_L006_R1.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3830631847 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 815b2149-ece4-4c82-8dfb-63b2d0af96e9 ce603dafd0d871cfd9b1c57fbac98789 {"aliquot_tag": "ALQ_6be23521", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.RNA-Seq.S23_L006_R2.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4205662996 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 c027bd21-be0e-4223-96f4-1289dcdef549 b7fb6fbab81707bdf760b6c49177f8d4 {"aliquot_tag": "ALQ_6be23521", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.RNA-Seq.S24_L006_R1.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3759868376 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 e42c45c9-4e7a-4ab5-98f0-901f0e838227 8343b1db3bed5c9964dd29c6bf85ea6a {"aliquot_tag": "ALQ_2596c8ff", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.RNA-Seq.S24_L006_R2.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4267385037 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 86834635-3448-41b6-8b88-90c7ed3edf2c bd699d7792705491314bd80da997c59e {"aliquot_tag": "ALQ_2596c8ff", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.RNA-Seq.transcriptome.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.transcriptome.gdc_realn.bam 9196583571 BAM transcriptome harmonized CPTAC3 7ac481eb-1107-4472-8c33-bfe4b3012b2e dd04465d739c7a1f05666ad5a36e14b1 {"aliquot_tag": "ALQ_6be23521", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.RNA-Seq.transcriptome.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.transcriptome.gdc_realn.bam 8854136088 BAM transcriptome harmonized CPTAC3 a9cbf911-4245-40dd-a024-4103fe3270bd e33575fc9b5342f5d51e6df85b2fbd17 {"aliquot_tag": "ALQ_2596c8ff", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.WGS.N C3N-02261 CCRCC WGS blood_normal CPT0381730002 CPT0381730002.WholeGenome.RP-2158.bam 24137556197 BAM submitted_aligned CPTAC3 94c99a5b-90e5-4236-b65b-87a7809b6d84 f8abb11a9cf2cc2fc7610053c932ab05 {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02261.WGS.N.hg38 C3N-02261 CCRCC WGS blood_normal CPT0381730002 06132899-2648-4344-b26a-61e507aaf27c_wgs_gdc_realn.bam 70371090283 BAM harmonized CPTAC3 71556c23-559a-4f70-979b-c2144aa2321a 95c6a899f3ad1a4024a0c5f73850ec69 {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02261.WGS.T C3N-02261 CCRCC WGS tumor CPT0381550009 CPT0381550009.WholeGenome.RP-2158.bam 21913075787 BAM submitted_aligned CPTAC3 a40f848a-7aff-4654-b943-d04335d9de1c 4b45574f5baf0727fdb8e7548bc02fbd {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.WGS.T.hg38 C3N-02261 CCRCC WGS tumor CPT0381550009 435a9d86-5419-4b91-8409-e11bdc8b947d_wgs_gdc_realn.bam 66502869082 BAM harmonized CPTAC3 7218687d-4e69-45b8-8a38-08e199c0dd56 951e74c5068c3119e7fb129db3ad801c {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.WXS.A C3N-02261 CCRCC WXS tissue_normal CPT0381600009 CPT0381600009.WholeExome.RP-1303.bam 20500242641 BAM submitted_aligned CPTAC3 5efc52a1-fa9f-4703-9656-fe83c063c10a 664af795ffb2124fe9be4516334721e2 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02261.WXS.A.hg38 C3N-02261 CCRCC WXS tissue_normal CPT0381600009 8f9c91fd-069d-438c-a91f-c9d26c11e4b6_wxs_gdc_realn.bam 28111421870 BAM harmonized CPTAC3 5aa01370-1091-473f-8d4e-d2835219ef60 1670c126862bc2e4b34523b94a2bced6 {"aliquot_tag": "ALQ_fb5d28b0", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-02261.WXS.N C3N-02261 CCRCC WXS blood_normal CPT0381730002 CPT0381730002.WholeExome.RP-1303.bam 27440857031 BAM submitted_aligned CPTAC3 d17d94d6-00b8-4e43-b653-6d875144d11d 57d1fdc1fc2f0c597374e8a40800eabb {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02261.WXS.N.hg38 C3N-02261 CCRCC WXS blood_normal CPT0381730002 06132899-2648-4344-b26a-61e507aaf27c_wxs_gdc_realn.bam 37531620547 BAM harmonized CPTAC3 9ca3e66d-56ce-4697-9f34-125f11851d4a 1b66314ef9b001490f73ad2ec4089bd0 {"aliquot_tag": "ALQ_e073584d", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-02261.WXS.T C3N-02261 CCRCC WXS tumor CPT0381550009 CPT0381550009.WholeExome.RP-1303.bam 24514101071 BAM submitted_aligned CPTAC3 e640e5f9-7123-4c1f-a472-e173102a9b7e bc2accb7314f3e55ba385b3d73e5cdd2 {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02261.WXS.T.hg38 C3N-02261 CCRCC WXS tumor CPT0381550009 435a9d86-5419-4b91-8409-e11bdc8b947d_wxs_gdc_realn.bam 33938883650 BAM harmonized CPTAC3 3f2b850b-1bfa-4e5f-901a-efc75c21efc1 544896e9ad8ea9dc7952e43ea35b638f {"aliquot_tag": "ALQ_b529d56e", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-02262.MethArray.Green.T C3N-02262 CCRCC Methylation_Array tumor CPT0188140011 203219640102_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c1f7eae6-a82a-46f4-9d4b-997a103bbffb 41b347a576e31d3981eab87b11a2bb4e {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.MethArray.Red.T C3N-02262 CCRCC Methylation_Array tumor CPT0188140011 203219640102_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 ea84492b-2b2d-4330-aa0f-84fb4a13046c 564b330a55805fceefd07bd7f887213c {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.miRNA-Seq.S33_L005_R1.T C3N-02262 CCRCC miRNA-Seq tumor CPT0188140009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L005_R1_001.unaln.bam 226634328 BAM S33_L005_R1 submitted_unaligned CPTAC3 924827c0-8a3c-48c2-ae1e-91858389a065 938acf5ccfcc40fb7fd7b9e371110307 {"aliquot_tag": "ALQ_a8b6d39d", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.miRNA-Seq.T.hg38 C3N-02262 CCRCC miRNA-Seq tumor CPT0188140009 f21056f2-ea37-4161-9619-ba5343c80624_mirnaseq_gdc_realn.bam 242644297 BAM harmonized CPTAC3 225aef3d-8429-4603-b018-9fd16f90ae91 45ed65a5649563c5059be2774aa23445 {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.RNA-Seq.chimeric.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.chimeric.gdc_realn.bam 30853967 BAM chimeric harmonized CPTAC3 95081f2d-b45c-4dd5-a565-d988e0f6ed09 2855cd43fcd05256b398ef8fe9e40dff {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.RNA-Seq.genomic.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.genomic.gdc_realn.bam 7174577689 BAM genomic harmonized CPTAC3 bfb6d370-c46d-4479-8eee-96b09df1a164 91f9081f4dbbee02bff6de3b412c4d59 {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.RNA-Seq.S21_L006_R1.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3383668401 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 5500f194-9b8d-439f-8e66-d8e8c01ce445 4389ccb94eee61a8a97a2bab48075ced {"aliquot_tag": "ALQ_a8b6d39d", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.RNA-Seq.S21_L006_R2.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3615632431 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 089b6abe-2fc7-4878-97b8-cf6f55a06005 a9e7880ac1f9f06092538f23565bb60b {"aliquot_tag": "ALQ_a8b6d39d", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.RNA-Seq.transcriptome.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.transcriptome.gdc_realn.bam 9621366897 BAM transcriptome harmonized CPTAC3 d7c88833-50b3-4c86-a65b-f30bc2491c54 c1d02e77f33d85c8e9492fb7ecaf9d8f {"aliquot_tag": "ALQ_a8b6d39d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.WGS.N C3N-02262 CCRCC WGS blood_normal CPT0188170002 CPT0188170002.WholeGenome.RP-1303.bam 58426763747 BAM submitted_aligned CPTAC3 7dc08de4-c05c-4590-9712-fe2f32fcf103 995206aa457e5ef4079f84328b76baa0 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02262.WGS.N.hg38 C3N-02262 CCRCC WGS blood_normal CPT0188170002 4b1e0be9-79d2-48bd-bb97-e8539f79c106_wgs_gdc_realn.bam 84665084675 BAM harmonized CPTAC3 b5e3c796-78ce-473f-80ec-55314ba17b06 3c078a95086073eb2be6ca74af6bd3b9 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02262.WGS.T C3N-02262 CCRCC WGS tumor CPT0188140011 CPT0188140011.WholeGenome.RP-1303.bam 54859323733 BAM submitted_aligned CPTAC3 17e55631-3b41-41b6-93cd-c8ec2f265dea f28cf396eedfece3d8a5e64b5d1596fa {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.WGS.T.hg38 C3N-02262 CCRCC WGS tumor CPT0188140011 2e34dae3-033f-4ce6-b20a-45eefd4a1de2_wgs_gdc_realn.bam 80430271039 BAM harmonized CPTAC3 40618f99-a277-4d57-bc14-ee159246bed2 ee236633cbcefbff13d0b65f5ea5856f {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.WXS.N C3N-02262 CCRCC WXS blood_normal CPT0188170002 CPT0188170002.WholeExome.RP-1303.bam 21086913487 BAM submitted_aligned CPTAC3 84c07cb6-421f-4d9b-9b53-f8f035c839f5 0fa07f68089013cf8a3f3dc340a3eb87 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02262.WXS.N.hg38 C3N-02262 CCRCC WXS blood_normal CPT0188170002 4b1e0be9-79d2-48bd-bb97-e8539f79c106_wxs_gdc_realn.bam 28927464383 BAM harmonized CPTAC3 122d407a-0b01-4f0e-84c2-99493fe0754d e02ba1eaad675bc5f81e27fc2d00f589 {"aliquot_tag": "ALQ_78c470c5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02262.WXS.T C3N-02262 CCRCC WXS tumor CPT0188140011 CPT0188140011.WholeExome.RP-1303.bam 25272079981 BAM submitted_aligned CPTAC3 2f7ee254-7846-4c43-8e05-4fa0b9da818b 642f6646e6729f28250ea15498d493ae {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02262.WXS.T.hg38 C3N-02262 CCRCC WXS tumor CPT0188140011 2e34dae3-033f-4ce6-b20a-45eefd4a1de2_wxs_gdc_realn.bam 34780418586 BAM harmonized CPTAC3 a4e1c860-cff3-4fa3-95f4-16fb30ff3a31 81588fde526d64f45764b5a63d91d60d {"aliquot_tag": "ALQ_bf766aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.MethArray.Green.A C3N-02263 CCRCC Methylation_Array tissue_normal CPT0188810006 204930640120_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c024c074-45cb-4681-b6da-55195ac1fffb f0eb0238bf41f27822d19eca40d24ea6 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.MethArray.Green.T C3N-02263 CCRCC Methylation_Array tumor CPT0188180006 203028200100_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 52e555e5-965a-4348-ad52-6ad8f9dae945 5b7ef85cb806632c0f90268b16253cbc {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.MethArray.Red.A C3N-02263 CCRCC Methylation_Array tissue_normal CPT0188810006 204930640120_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 badea235-d22e-4eac-a5d0-65714ea65ae1 1892ef00f624aa3150539be30b491fc0 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.MethArray.Red.T C3N-02263 CCRCC Methylation_Array tumor CPT0188180006 203028200100_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 f6910114-051e-4e4b-a3f7-fa9f8861b05a 02aa0d6e837b91c1b5e7563ae30763da {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.miRNA-Seq.A.hg38 C3N-02263 CCRCC miRNA-Seq tissue_normal CPT0188810009 e17ab331-5a79-461a-9719-f34e590c0fd3_mirnaseq_gdc_realn.bam 212509525 BAM harmonized CPTAC3 ef4922f8-696c-419b-a7ce-9b7bdfd239d9 529e132eeca1c07e6a474bdef97dc3d1 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.miRNA-Seq.S23_L005_R1.T C3N-02263 CCRCC miRNA-Seq tumor CPT0188180009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L005_R1_001.unaln.bam 222888114 BAM S23_L005_R1 submitted_unaligned CPTAC3 bc25cd24-09ed-4923-98d9-be60b04ab18f 5de82006ed20f2c8bee4459dde1d438e {"aliquot_tag": "ALQ_6d463e9c", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.miRNA-Seq.S9_L001_R1.A C3N-02263 CCRCC miRNA-Seq tissue_normal CPT0188810009 190206_UNC31-K00269_0191_AH2WY5BBXY_TAATCG_S9_L001_R1_001.unaln.bam 190796237 BAM S9_L001_R1 submitted_unaligned CPTAC3 adbac92d-cf66-4b97-ae09-95cb9dda1a98 46a5836cf7556bf91159674a0597f63c {"aliquot_tag": "ALQ_47590d25", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.miRNA-Seq.T.hg38 C3N-02263 CCRCC miRNA-Seq tumor CPT0188180009 9878c9ca-a917-4a84-8fca-34558c18510a_mirnaseq_gdc_realn.bam 244577516 BAM harmonized CPTAC3 45314e17-cdd1-4124-8bfb-db04bcaadb42 3271f0ad20ab17ca024fe15e061fb8ac {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.RNA-Seq.chimeric.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.chimeric.gdc_realn.bam 114289125 BAM chimeric harmonized CPTAC3 b51038ea-5721-4583-a84a-e00939786095 e5b05e205f6e5c017d0cf95a8522b561 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.RNA-Seq.chimeric.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.chimeric.gdc_realn.bam 34508276 BAM chimeric harmonized CPTAC3 f3d3bd07-ac2d-44be-8c7c-82810811f404 e81d7a62ca0b4114642f28dbeccdf835 {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.RNA-Seq.genomic.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.genomic.gdc_realn.bam 9237415494 BAM genomic harmonized CPTAC3 24d8c628-2045-4b97-873e-7954377900a5 09f6c815904e8e93f2852b3809de9681 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.RNA-Seq.genomic.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.genomic.gdc_realn.bam 6879379309 BAM genomic harmonized CPTAC3 ae9faef0-97bc-433c-8f9d-3b026ba6b927 31056f5559d07a6846dce813ded77d80 {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.RNA-Seq.S24_L006_R1.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3302388212 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 fc0b8a08-6cb6-458a-9e2e-85588c256f8c c9592492e364b7ae4525d1a8ff9c098e {"aliquot_tag": "ALQ_6d463e9c", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.RNA-Seq.S24_L006_R2.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3536214219 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 f2bad5e0-e9bb-42ab-bfec-ab8b04efd56f e792c803acb2433cb424e8ccdbb10497 {"aliquot_tag": "ALQ_6d463e9c", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.RNA-Seq.S4_L001_R1.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4198386442 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 3756ce64-3671-44a0-9521-5b6fb373bd1a 5ff89d5412ed9ba89d6fbfc36db4e5ce {"aliquot_tag": "ALQ_47590d25", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.RNA-Seq.S4_L001_R2.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4337643022 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 311f06c2-9d4b-4d9d-b914-66108d4118f1 3dfdc73d493c8d95c1424eddebf651a5 {"aliquot_tag": "ALQ_47590d25", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.RNA-Seq.transcriptome.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.transcriptome.gdc_realn.bam 9596779878 BAM transcriptome harmonized CPTAC3 0accd542-8561-46e6-bdff-5e65438d1a0b 4696ea9d43aed3019ae3e72b4c178e49 {"aliquot_tag": "ALQ_47590d25", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.RNA-Seq.transcriptome.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.transcriptome.gdc_realn.bam 9215618072 BAM transcriptome harmonized CPTAC3 da3ecd54-4f39-4ca7-8836-2a428f54e9f6 c8d803ca8f88b34760a4d4943c31680f {"aliquot_tag": "ALQ_6d463e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.WGS.N C3N-02263 CCRCC WGS blood_normal CPT0188840002 CPT0188840002.WholeGenome.RP-1303.bam 61869406783 BAM submitted_aligned CPTAC3 41d362bd-e6bc-47b8-a6d0-797f7800596d e19582d99ac5104efb2e1da6d1a30ad8 {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02263.WGS.N.hg38 C3N-02263 CCRCC WGS blood_normal CPT0188840002 ae9709b4-e76f-46e6-a19e-b026f678d141_wgs_gdc_realn.bam 90978485038 BAM harmonized CPTAC3 c14b8d75-6020-4939-bb47-d2a719366d87 5319d1fbc2790439e2b634805fd5406f {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02263.WGS.T C3N-02263 CCRCC WGS tumor CPT0188180006 CPT0188180006.WholeGenome.RP-1303.bam 58951215721 BAM submitted_aligned CPTAC3 0ca56eec-0aac-46e1-9542-fe186cd002ba 18d63f5f91afe2988597a2036662ae5b {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.WGS.T.hg38 C3N-02263 CCRCC WGS tumor CPT0188180006 b1ccb62f-e55a-4f39-8a77-d5e111bf9be1_wgs_gdc_realn.bam 86795756546 BAM harmonized CPTAC3 fbfdd682-d8bc-44ce-9c0b-c2fbb3ac317c 0badecbbd0156cf7d470d26dcae013ba {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.WXS.A C3N-02263 CCRCC WXS tissue_normal CPT0188810006 CPT0188810006.WholeExome.RP-1303.bam 25870926321 BAM submitted_aligned CPTAC3 4b065ae1-3756-4fc5-8463-08f3e2c0c24f ec504d917d935a2104b63627103b5fb1 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.WXS.A.hg38 C3N-02263 CCRCC WXS tissue_normal CPT0188810006 fa1b6026-026d-42a8-b15a-5f3fa1daea86_wxs_gdc_realn.bam 35720238602 BAM harmonized CPTAC3 b92a2844-b59c-4265-aab7-bbb87b92f35c 76084a34232ed51f0cd1a05fb33bab77 {"aliquot_tag": "ALQ_d7e610b4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02263.WXS.N C3N-02263 CCRCC WXS blood_normal CPT0188840002 CPT0188840002.WholeExome.RP-1303.bam 23683676503 BAM submitted_aligned CPTAC3 009bfdf2-ccab-4704-9147-908fd8b2b630 1a6ae587a26fac98d65a69b85df3bcf3 {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02263.WXS.N.hg38 C3N-02263 CCRCC WXS blood_normal CPT0188840002 ae9709b4-e76f-46e6-a19e-b026f678d141_wxs_gdc_realn.bam 32312214793 BAM harmonized CPTAC3 92b35938-6255-4558-b877-55e346e8f210 bfa9c94cdfd66c67d1bcc688547230bf {"aliquot_tag": "ALQ_186b5bdd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02263.WXS.T C3N-02263 CCRCC WXS tumor CPT0188180006 CPT0188180006.WholeExome.RP-1303.bam 24201504384 BAM submitted_aligned CPTAC3 6210463d-9254-4933-95d0-bf06372a4448 adf37f2c93c39bd3f8b12e95dbaf05b3 {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02263.WXS.T.hg38 C3N-02263 CCRCC WXS tumor CPT0188180006 b1ccb62f-e55a-4f39-8a77-d5e111bf9be1_wxs_gdc_realn.bam 33078636916 BAM harmonized CPTAC3 9d3c1aa2-f8c5-49e7-a423-4f8d0dc54f67 59c969d0e813af60504c61d9ef2bcd3f {"aliquot_tag": "ALQ_fdf9230d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.MethArray.Green.T C3N-02264 CCRCC Methylation_Array tumor CPT0188850006 203220070100_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 88a73fe4-b933-4452-8b60-05cfb49d8cec 9254c1078906a27de3c4604f563a967b {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.MethArray.Red.T C3N-02264 CCRCC Methylation_Array tumor CPT0188850006 203220070100_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 dad23d5d-b483-455d-a6c4-6e645d0f2fa1 3a11aa0a7214fca159578f6ce2f4c3b0 {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.miRNA-Seq.S34_L005_R1.T C3N-02264 CCRCC miRNA-Seq tumor CPT0188850009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L005_R1_001.unaln.bam 172412234 BAM S34_L005_R1 submitted_unaligned CPTAC3 557bebc5-6df9-48d7-a4ad-eba8b7ea2fa3 b171d57fe090f670e1667b17053aadd8 {"aliquot_tag": "ALQ_b2d9abe5", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.miRNA-Seq.T.hg38 C3N-02264 CCRCC miRNA-Seq tumor CPT0188850009 dfa0a515-1f66-4e82-9467-e7a0ae787ecc_mirnaseq_gdc_realn.bam 193201550 BAM harmonized CPTAC3 2e1064c1-c6be-4aa8-9b86-2a5a2dbeb473 7b1b6bedbdf98471efcb57ddcb3dd4e8 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.RNA-Seq.chimeric.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.chimeric.gdc_realn.bam 29722745 BAM chimeric harmonized CPTAC3 82bb73c1-e3fe-45f5-859f-b1d8085e11a7 884c816e409da63b43857253facd8ad0 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.RNA-Seq.genomic.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.genomic.gdc_realn.bam 6540321472 BAM genomic harmonized CPTAC3 359d42b6-7e7a-41ae-9fb4-793483bd09b8 5e96ecbc94194b5ab5993b4b7062d6f8 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.RNA-Seq.S3_L007_R1.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R1_001.fastq.gz 2914547264 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 3fc70ab6-da5a-4d27-8aa1-e3cdf7829d70 3c62dfc725870db2075449a2252c6f41 {"aliquot_tag": "ALQ_b2d9abe5", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.RNA-Seq.S3_L007_R2.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3100480885 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 38c8d9d6-d958-4753-af11-080eb31b45f9 3ffd3c2d1c59b312fab34cf7c1764597 {"aliquot_tag": "ALQ_b2d9abe5", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.RNA-Seq.transcriptome.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.transcriptome.gdc_realn.bam 8290093801 BAM transcriptome harmonized CPTAC3 51cb1b28-746e-4fc7-9ec0-d2318d58918f f4f5b2064e6ee2cc618c95bf64207458 {"aliquot_tag": "ALQ_b2d9abe5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.WGS.N C3N-02264 CCRCC WGS blood_normal CPT0188890002 CPT0188890002.WholeGenome.RP-1303.bam 55335709349 BAM submitted_aligned CPTAC3 279ab7f4-6c5c-4548-8d43-09d4a3cb494e f9195f9a9d36f69ce5d8330137474532 {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02264.WGS.N.hg38 C3N-02264 CCRCC WGS blood_normal CPT0188890002 3ef639b1-6ede-4f5d-9a2b-a461409cb1c4_wgs_gdc_realn.bam 81412544331 BAM harmonized CPTAC3 4b245348-5cf9-4351-a136-3b65a8641f6c d9b7d814d5594005f478f4e7604083ba {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02264.WGS.T C3N-02264 CCRCC WGS tumor CPT0188850006 CPT0188850006.WholeGenome.RP-1303.bam 119787345990 BAM submitted_aligned CPTAC3 0f8509e7-da00-4888-98e2-383d3122dbb6 cf9cdcfb6d7d4a413fc50948006aee3e {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.WGS.T.hg38 C3N-02264 CCRCC WGS tumor CPT0188850006 8c388929-8867-4312-9e3e-a376ee1571a6_wgs_gdc_realn.bam 174968137420 BAM harmonized CPTAC3 b95946af-6e1f-4fa3-ad22-7e68fd32b879 d7d31d7d7b4f7d3ece3812159afb66e3 {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.WXS.N C3N-02264 CCRCC WXS blood_normal CPT0188890002 CPT0188890002.WholeExome.RP-1303.bam 27897082130 BAM submitted_aligned CPTAC3 90bf6495-0e26-4b96-a50d-c7325178748b 853ce2255caad11d590ba9faa033a0fe {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02264.WXS.N.hg38 C3N-02264 CCRCC WXS blood_normal CPT0188890002 3ef639b1-6ede-4f5d-9a2b-a461409cb1c4_wxs_gdc_realn.bam 38982207568 BAM harmonized CPTAC3 78a4fe01-a7f0-4bea-b439-a20f2fd36d28 70607d878a3dc8372cc63f3813bbab3a {"aliquot_tag": "ALQ_e0fb9f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02264.WXS.T C3N-02264 CCRCC WXS tumor CPT0188850006 CPT0188850006.WholeExome.RP-1303.bam 25704828669 BAM submitted_aligned CPTAC3 0f226745-08f7-49be-9897-55f3cd4f1faf ce0267276f80975d9142ac30e6533196 {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02264.WXS.T.hg38 C3N-02264 CCRCC WXS tumor CPT0188850006 8c388929-8867-4312-9e3e-a376ee1571a6_wxs_gdc_realn.bam 34910790770 BAM harmonized CPTAC3 023895c8-df6e-4b84-adae-2552278195af 7195b11ff11bf66dfdf7281b21f30b9e {"aliquot_tag": "ALQ_2266b674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.MethArray.Green.A C3N-02265 CCRCC Methylation_Array tissue_normal CPT0188910009 204930640061_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2b4b3a1d-6b26-4d56-b5fd-232cee56e349 d74baa03a6ec27f64813c7e0b339fafb {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.MethArray.Green.T C3N-02265 CCRCC Methylation_Array tumor CPT0188900006 203219650005_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 180ca6b1-bd47-4aa1-9d74-321a7a5e89ce d5becb66b0e457654c11b149c055bffa {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.MethArray.Red.A C3N-02265 CCRCC Methylation_Array tissue_normal CPT0188910009 204930640061_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 f7b3c665-c69b-4150-9482-043499b6ebcb 368a105b26b57933c51def28a36adb8b {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.MethArray.Red.T C3N-02265 CCRCC Methylation_Array tumor CPT0188900006 203219650005_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 b7e49c4d-d3bb-43d2-b741-e027072a8251 25d5e0ffb8745e0c66131a8991e661a9 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.miRNA-Seq.A.hg38 C3N-02265 CCRCC miRNA-Seq tissue_normal CPT0188910006 9a50f027-5e54-4ec9-b372-6246419ef1b5_mirnaseq_gdc_realn.bam 189271401 BAM harmonized CPTAC3 08766175-0c34-4225-8b98-b3f7054a44b3 37f52bb677addfa6a2978690e3819536 {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.miRNA-Seq.S24_L005_R1.T C3N-02265 CCRCC miRNA-Seq tumor CPT0188900009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L005_R1_001.unaln.bam 182542044 BAM S24_L005_R1 submitted_unaligned CPTAC3 1bb9a3aa-95b4-4ebe-bf58-06d6c9c72cef bc2bc0bd90518788d294ab8d39231367 {"aliquot_tag": "ALQ_b165f730", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.miRNA-Seq.S44_L002_R1.A C3N-02265 CCRCC miRNA-Seq tissue_normal CPT0188910006 190206_UNC31-K00269_0191_AH2WY5BBXY_ACAGTG_S44_L002_R1_001.unaln.bam 170010066 BAM S44_L002_R1 submitted_unaligned CPTAC3 958b91b2-026e-4ce3-b1a5-e80fbd2a86c8 f4266579d5a881a6e09803dc6f73f8c4 {"aliquot_tag": "ALQ_1cbac311", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.miRNA-Seq.T.hg38 C3N-02265 CCRCC miRNA-Seq tumor CPT0188900009 a6e66daa-f52f-4a46-abb9-675bb0fa057d_mirnaseq_gdc_realn.bam 201456997 BAM harmonized CPTAC3 8a3fbc37-84fb-4218-9781-bd27d83987de cece5f8e7af4b8b4cc987bcb3bf99085 {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.RNA-Seq.chimeric.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.chimeric.gdc_realn.bam 53376536 BAM chimeric harmonized CPTAC3 7bd1e49b-dda3-4ec9-a69c-fe00c92ffef0 7a86171ffb7f3641d8a1bf3f7a32416e {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.RNA-Seq.chimeric.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.chimeric.gdc_realn.bam 47739758 BAM chimeric harmonized CPTAC3 b3222eed-336d-401a-9267-b80e9d16da2a 8f056f0eb8f921407a0c69e4ebfd925a {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.RNA-Seq.genomic.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.genomic.gdc_realn.bam 7597041692 BAM genomic harmonized CPTAC3 64e016e8-c611-4b3a-bd19-4575d4d86f77 b1b1c0535577abbf77bbbe3c354f7512 {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.RNA-Seq.genomic.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.genomic.gdc_realn.bam 10418031407 BAM genomic harmonized CPTAC3 dd7b772f-efd7-43a5-b2cc-18c354b5e952 bbbd74fe891c2692e222efde1860d1c4 {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.RNA-Seq.S15_L004_R1.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R1_001.fastq.gz 3442718189 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 473686e3-9e58-4ad7-bd58-24861cb08a95 41eb0107334da9dc81a72dfce6a2445c {"aliquot_tag": "ALQ_1cbac311", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.RNA-Seq.S15_L004_R2.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R2_001.fastq.gz 3806720586 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 c417302d-9f31-4691-adce-8a6e72606cc4 2f0ed449abe1f87f42d3850ae793fd2e {"aliquot_tag": "ALQ_1cbac311", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.RNA-Seq.S2_L007_R1.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 5092665356 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 8bb415e9-7eae-433f-9559-4ac9d7b7e5c5 af798c7d1281d6cd87b964ac4ebeeb08 {"aliquot_tag": "ALQ_b165f730", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.RNA-Seq.S2_L007_R2.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 5390866218 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 3ed06e16-0850-4521-977d-11412be032c3 c3205dafafb9ad3c47ae843bad90d426 {"aliquot_tag": "ALQ_b165f730", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.RNA-Seq.transcriptome.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.transcriptome.gdc_realn.bam 8415930009 BAM transcriptome harmonized CPTAC3 18289c4c-01c6-4928-b8d8-8ade2d079aca a59d6e97331ee989fe05c5392c4b8677 {"aliquot_tag": "ALQ_1cbac311", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.RNA-Seq.transcriptome.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.transcriptome.gdc_realn.bam 13608146017 BAM transcriptome harmonized CPTAC3 25bb9810-ba09-4ce9-9a66-6b18d2134027 26cbbc101b22f3d20c613134a728b65e {"aliquot_tag": "ALQ_b165f730", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.WGS.N C3N-02265 CCRCC WGS blood_normal CPT0188940002 CPT0188940002.WholeGenome.RP-1303.bam 104776168397 BAM submitted_aligned CPTAC3 d961c3a9-a812-4115-999a-0b82ac6731a6 01deb20ffdcf1ee3f2023a3555aedcc9 {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02265.WGS.N.hg38 C3N-02265 CCRCC WGS blood_normal CPT0188940002 40f13e63-757b-43af-a946-8e2bdab7163d_wgs_gdc_realn.bam 151479198582 BAM harmonized CPTAC3 140f3f69-4cdb-4705-9e70-86fe2efc1420 f5fcebae06f175df7affcb101a59375f {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02265.WGS.T C3N-02265 CCRCC WGS tumor CPT0188900006 CPT0188900006.WholeGenome.RP-1303.bam 125237552249 BAM submitted_aligned CPTAC3 f0782c34-97b6-4d07-bf94-b8f8bfc06b1f ae2d7b61c2f45603d45306309d69173c {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.WGS.T.hg38 C3N-02265 CCRCC WGS tumor CPT0188900006 3f769f5f-911e-4331-9517-b6d0e852d377_wgs_gdc_realn.bam 183386497071 BAM harmonized CPTAC3 c62d3ed2-0d3e-497e-bac6-70450b01f452 cf098fa749b0c1f35c75ff3caf613b91 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.WXS.A C3N-02265 CCRCC WXS tissue_normal CPT0188910009 CPT0188910009.WholeExome.RP-1303.bam 19172322471 BAM submitted_aligned CPTAC3 87d7158b-185e-4c7a-a1af-bd1239b0d062 35594f976811ae9210d70e2b4e076d71 {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.WXS.A.hg38 C3N-02265 CCRCC WXS tissue_normal CPT0188910009 1b9e5fc5-ef8c-4dfb-aa74-6f0613304efc_wxs_gdc_realn.bam 26937615074 BAM harmonized CPTAC3 b849f2c8-d5ef-45eb-92ac-c12e3f128369 2ff97e54264086702042645e4fca3195 {"aliquot_tag": "ALQ_8c05de80", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02265.WXS.N C3N-02265 CCRCC WXS blood_normal CPT0188940002 CPT0188940002.WholeExome.RP-1303.bam 17026339704 BAM submitted_aligned CPTAC3 82bcd8e2-a75e-4798-98b1-cbf33142fafd 0f18649504e74aa732e8373d47d08b98 {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02265.WXS.N.hg38 C3N-02265 CCRCC WXS blood_normal CPT0188940002 40f13e63-757b-43af-a946-8e2bdab7163d_wxs_gdc_realn.bam 23242266143 BAM harmonized CPTAC3 3f6a5ef3-b16b-4b35-a9c3-19788791eff8 d7a125d54a563919902d20585efe6f63 {"aliquot_tag": "ALQ_d3378878", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02265.WXS.T C3N-02265 CCRCC WXS tumor CPT0188900006 CPT0188900006.WholeExome.RP-1303.bam 26205075718 BAM submitted_aligned CPTAC3 71c2cfca-947f-4b26-babe-f6d4e0d58da8 9ea45abb12473a7485bec2cd91a1ae08 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02265.WXS.T.hg38 C3N-02265 CCRCC WXS tumor CPT0188900006 3f769f5f-911e-4331-9517-b6d0e852d377_wxs_gdc_realn.bam 36573429449 BAM harmonized CPTAC3 04a32656-19b5-4ead-b77a-3cf0f08c2d45 966f251792ab4b57a729339e9ae12f80 {"aliquot_tag": "ALQ_21daeaa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.MethArray.Green.T C3N-02266 CCRCC Methylation_Array tumor CPT0188950006 203219650218_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 3d7ae721-d7a6-4947-9528-9565f1bd6d30 fdb47424d5d1409adb9d8275798f574b {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.MethArray.Red.T C3N-02266 CCRCC Methylation_Array tumor CPT0188950006 203219650218_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 ca12c0d2-c3a8-4cfa-9e36-527e5cc9d3ee 51a311f180db82f022728534bee4610a {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.miRNA-Seq.S35_L005_R1.T C3N-02266 CCRCC miRNA-Seq tumor CPT0188950009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L005_R1_001.unaln.bam 228513270 BAM S35_L005_R1 submitted_unaligned CPTAC3 98422dff-172c-4b4d-b5a9-fe6f3cd455ed ff5e42a1175d6ed12533b5fca9a194df {"aliquot_tag": "ALQ_79857840", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.miRNA-Seq.T.hg38 C3N-02266 CCRCC miRNA-Seq tumor CPT0188950009 05a6e966-f900-4977-968a-a46a1fa25446_mirnaseq_gdc_realn.bam 259259934 BAM harmonized CPTAC3 557d80ee-6f16-424f-90a2-304d75709462 b97aba291835bc09a6d982d29c7e0d9c {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.RNA-Seq.chimeric.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.chimeric.gdc_realn.bam 41515638 BAM chimeric harmonized CPTAC3 7cff4843-a65d-4355-8bdf-17b2f16c8c1c 454abe116c216ce53443c0ad20cd2776 {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.RNA-Seq.genomic.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.genomic.gdc_realn.bam 9971371408 BAM genomic harmonized CPTAC3 881eb0d2-5731-4ba6-8dd1-361739b0e7eb 62253f1b9868699eeb39c37c242c0011 {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.RNA-Seq.S1_L007_R1.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4610916562 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 29c048f0-71fb-467e-8040-b06b12f03ce5 7d0c0d5b44d0c454d45ccc82361955f8 {"aliquot_tag": "ALQ_79857840", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.RNA-Seq.S1_L007_R2.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 5111306517 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 9415c7d5-4fb8-499b-b03f-e3dcd5ec25e4 88f5a6df0db04349afc55348274a2b92 {"aliquot_tag": "ALQ_79857840", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.RNA-Seq.transcriptome.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.transcriptome.gdc_realn.bam 12262099065 BAM transcriptome harmonized CPTAC3 f8feea90-3a71-4966-be7e-6d8412db405f a3823345fac1952cab7f0f7c27e4b6da {"aliquot_tag": "ALQ_79857840", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.WGS.N C3N-02266 CCRCC WGS blood_normal CPT0188970002 CPT0188970002.WholeGenome.RP-1303.bam 114399327135 BAM submitted_aligned CPTAC3 e922214d-6045-49e1-9494-79aa1db485db d98eab735d7127225c26e180ebefe99e {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02266.WGS.N.hg38 C3N-02266 CCRCC WGS blood_normal CPT0188970002 66471fe4-e446-4c79-a8fe-283047c13b5a_wgs_gdc_realn.bam 166254112111 BAM harmonized CPTAC3 620a4374-783c-474b-9cb0-383011cdaebb aa79168889c097a233761e51337c4610 {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02266.WGS.T C3N-02266 CCRCC WGS tumor CPT0188950006 CPT0188950006.WholeGenome.RP-1303.bam 112154524414 BAM submitted_aligned CPTAC3 51ad6ea0-fd91-45d5-935e-ccff98fe1e67 4ac58a4f33f9ffc3c47c7c6329b46f2d {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.WGS.T.hg38 C3N-02266 CCRCC WGS tumor CPT0188950006 df1cc5c1-ec09-4329-b682-02cfe897e8af_wgs_gdc_realn.bam 165591132096 BAM harmonized CPTAC3 ef510c58-3e21-4220-b9ec-d3b2702d669e a3fd192478761cd8806ee6236f2e31d7 {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.WXS.N C3N-02266 CCRCC WXS blood_normal CPT0188970002 CPT0188970002.WholeExome.RP-1303.bam 29279857529 BAM submitted_aligned CPTAC3 4fe45736-dff1-45c0-b476-e4517b3badd5 1727cc8ac24a58e417b63f64b117dd1f {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02266.WXS.N.hg38 C3N-02266 CCRCC WXS blood_normal CPT0188970002 66471fe4-e446-4c79-a8fe-283047c13b5a_wxs_gdc_realn.bam 41022813328 BAM harmonized CPTAC3 504592ce-cb29-4aa8-ad82-fe315e661ff1 972d2a6089d4e48a2295a3276e8492e4 {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02266.WXS.T C3N-02266 CCRCC WXS tumor CPT0188950006 CPT0188950006.WholeExome.RP-1303.bam 20392433151 BAM submitted_aligned CPTAC3 89373a12-c0c1-48a8-81c3-c9e0ca0165ca d886952273eda1c13d91faf2696e1883 {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02266.WXS.T.hg38 C3N-02266 CCRCC WXS tumor CPT0188950006 df1cc5c1-ec09-4329-b682-02cfe897e8af_wxs_gdc_realn.bam 28342817972 BAM harmonized CPTAC3 874e7360-bb66-4e48-a7e2-1f27c92dfd9d dd989f94e93021335c780805d29bfbea {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02271.MethArray.Green.T C3N-02271 UCEC Methylation_Array tumor CPT0181670011 203561450073_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5a44cb62-b701-4772-a9c7-7e6915066ae5 cd99041eae6d48f9067947a53734760e {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.MethArray.Red.T C3N-02271 UCEC Methylation_Array tumor CPT0181670011 203561450073_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 2baf4c42-6876-4aac-ab8a-206980f61fe2 521e6dc2546623e8c296995c1174dd83 {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.miRNA-Seq.S8_L003_R1.T C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L003_R1_001.unaln.bam 198650312 BAM S8_L003_R1 submitted_unaligned CPTAC3 65f39fa3-a13c-4621-8c2c-d5875f83873c 56794a0cc9d68ee326e6ce4343e6c5e4 {"aliquot_tag": "ALQ_2191da", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.miRNA-Seq.T.hg38 C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 74a1a56f-2fc1-4b68-bce0-e20f7068d906_mirnaseq_gdc_realn.bam 224584540 BAM harmonized CPTAC3 13e3debd-1565-41f2-9be6-78b90ab64f79 5a01929529c9fa59711f581d919e14cf {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.chimeric.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.chimeric.gdc_realn.bam 47133024 BAM chimeric harmonized CPTAC3 95796dfa-4a32-467d-a965-1391919f626d 61236fa621111face1531a3dcf9ff6f2 {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.chimeric.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.chimeric.gdc_realn.bam 236413547 BAM chimeric harmonized CPTAC3 3bec1f19-acf3-4d74-914d-dc1240393684 fd678922b130a7826e5b0ddb36713050 {"aliquot_tag": "ALQ_e723a805", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.genomic.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.genomic.gdc_realn.bam 8662076070 BAM genomic harmonized CPTAC3 c69d467d-e44a-4f77-918a-6dd750b98a8f 254940344e9a3fd965edc3c3a313d71e {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.genomic.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.genomic.gdc_realn.bam 11711728967 BAM genomic harmonized CPTAC3 c4c02e1f-e0c0-4836-af69-1f84db456866 6ab87c016f169fc4574c2c7d42929a1f {"aliquot_tag": "ALQ_e723a805", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.S35_R1.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R1_001.fastq.gz 6584273526 FASTQ S35_R1 submitted_unaligned CPTAC3 447ba7bf-e183-4b30-896c-815f9d460e20 3ba1e02f9344a5ddaf226d28c6bb6ea9 {"aliquot_tag": "ALQ_e723a805", "sample": "S35", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.S35_R2.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R2_001.fastq.gz 6694531573 FASTQ S35_R2 submitted_unaligned CPTAC3 65e2a265-2479-4bb9-8f70-e5308edc77ae 72ec457c29c10475c35e26790906f7da {"aliquot_tag": "ALQ_e723a805", "sample": "S35", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.S4_L001_R1.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R1_001.fastq.gz 4113611353 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 a94239b3-71d6-48b0-9f2d-02967507f364 5afd2dc44f31dc1b4616a9caffdd9856 {"aliquot_tag": "ALQ_2191da", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.S4_L001_R2.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R2_001.fastq.gz 4662404266 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 eccadfbc-6f7d-497c-a679-c31a2abad9ea 7e1df27bf3a61a0a2fd95b69748ef581 {"aliquot_tag": "ALQ_2191da", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.transcriptome.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.transcriptome.gdc_realn.bam 10108492186 BAM transcriptome harmonized CPTAC3 1d020c52-112b-45c5-bfd1-209e0c965413 fd6605b2bb1634f2f97a0f773f802a88 {"aliquot_tag": "ALQ_2191da", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.RNA-Seq.transcriptome.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.transcriptome.gdc_realn.bam 5580019898 BAM transcriptome harmonized CPTAC3 10095a05-5fad-4ff0-8ba1-f4c6beddba7c b6ac50cc7e8518c9f0e4bb2839a313d7 {"aliquot_tag": "ALQ_e723a805", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.WGS.N C3N-02271 UCEC WGS blood_normal CPT0181730002 CPT0181730002.WholeGenome.RP-1303.bam 78746740694 BAM submitted_aligned CPTAC3 2b1c3fc6-761d-40fe-9a92-151e7ec63630 9d3e6f800a724661845738e81535619d {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02271.WGS.N.hg38 C3N-02271 UCEC WGS blood_normal CPT0181730002 d9b7c46a-b056-40a3-b6a9-5c3018dc1d26_wgs_gdc_realn.bam 115500352900 BAM harmonized CPTAC3 f646282e-40af-441c-8e90-aede75106ba8 bd64a05e50df1a7d02605669f88c6014 {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02271.WGS.T C3N-02271 UCEC WGS tumor CPT0181670011 CPT0181670011.WholeGenome.RP-1303.bam 78699894579 BAM submitted_aligned CPTAC3 0d28d79f-e63c-40d7-b1a3-4c074e1b1253 a9cf8e24bcca6f1964d742cc04af4f1f {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.WGS.T.hg38 C3N-02271 UCEC WGS tumor CPT0181670011 ca2a315a-3e31-4193-a9dd-b8508de9be78_wgs_gdc_realn.bam 114472996172 BAM harmonized CPTAC3 d2df30de-6b3e-4147-bbde-a6a83b6a6461 f74bd6a0a469e07d00c7a76e8fea179b {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.WXS.N C3N-02271 UCEC WXS blood_normal CPT0181730002 CPT0181730002.WholeExome.RP-1303.bam 20990933045 BAM submitted_aligned CPTAC3 90962853-ddf3-4348-8cb4-41e9128ba334 479f40420431adddc04397a8bf366cec {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02271.WXS.N.hg38 C3N-02271 UCEC WXS blood_normal CPT0181730002 d9b7c46a-b056-40a3-b6a9-5c3018dc1d26_wxs_gdc_realn.bam 28548167534 BAM harmonized CPTAC3 362c4f04-bb02-4e8c-beea-7193f230be1f e9d591b4e9149c8f1761f370e14170f0 {"aliquot_tag": "ALQ_ce8570cb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02271.WXS.T C3N-02271 UCEC WXS tumor CPT0181670011 CPT0181670011.WholeExome.RP-1303.bam 26481454060 BAM submitted_aligned CPTAC3 c53ff2ba-02de-41a5-ab6b-ffc6475e3a22 fe733afe5cb4978deda59d4e81ba9b59 {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02271.WXS.T.hg38 C3N-02271 UCEC WXS tumor CPT0181670011 ca2a315a-3e31-4193-a9dd-b8508de9be78_wxs_gdc_realn.bam 36464927545 BAM harmonized CPTAC3 bd27f969-0783-48cc-ac16-3094c2af2430 e95cb3a6bdf99379788805168cdba024 {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.MethArray.Green.T C3N-02274 UCEC Methylation_Array tumor CPT0182380007 203561620049_R04C01_Grn.idat 13676233 IDAT Green NA CPTAC3 c37f78cc-20f1-403b-a902-8f03521d172e cba9a2df46e8898f4e04ed94f1a6e170 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.MethArray.Red.T C3N-02274 UCEC Methylation_Array tumor CPT0182380007 203561620049_R04C01_Red.idat 13676233 IDAT Red NA CPTAC3 2f817dd3-984e-400a-b5e5-1930092c58f9 bffafea51fc1c95e6082e259cb40e061 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.miRNA-Seq.S15_L001_R1.T C3N-02274 UCEC miRNA-Seq tumor CPT0182380010 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGTCA_S15_L001_R1_001.unaln.bam 205883780 BAM S15_L001_R1 submitted_unaligned CPTAC3 638228c7-80f9-41cb-8c8e-e169a975d820 4eec343aa08c9f460cc6131592f48ad2 {"aliquot_tag": "ALQ_e439493c", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.miRNA-Seq.T.hg38 C3N-02274 UCEC miRNA-Seq tumor CPT0182380010 e69f931b-8776-4320-9a85-acf1ae139ec1_mirnaseq_gdc_realn.bam 238411768 BAM harmonized CPTAC3 47ba0a10-5388-4359-9beb-ccdbb05ae927 23d05fd93cf7ecf9c3f9adcf42609286 {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.chimeric.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.chimeric.gdc_realn.bam 31761564 BAM chimeric harmonized CPTAC3 29df9e07-ab41-45d2-87b6-502c6ceed1f5 6ac0ff06d4a59fdfd083d09ae7dbe558 {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.chimeric.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.chimeric.gdc_realn.bam 140402122 BAM chimeric harmonized CPTAC3 a8ed21fb-a693-4ea1-a5b6-6e2780117932 e922ed04614bb597e1e7559e141706a6 {"aliquot_tag": "ALQ_a083d2d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.genomic.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.genomic.gdc_realn.bam 8363175125 BAM genomic harmonized CPTAC3 31a26787-5a55-4458-ab80-327965103b92 2b5e1e92a6bcfe4a7a9f21f58a268bbf {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.genomic.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.genomic.gdc_realn.bam 7073013886 BAM genomic harmonized CPTAC3 369b9440-5342-4481-b21a-0753743ca707 1d1ddf50c9439dfabc031082c9b3312d {"aliquot_tag": "ALQ_a083d2d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.S33_L005_R1.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R1_001.fastq.gz 4082146412 FASTQ S33_L005_R1 submitted_unaligned CPTAC3 5be907b3-28a4-48c7-9b52-b779badebd58 3bb81c69e58bfd8db8822074cf86c6ed {"aliquot_tag": "ALQ_e439493c", "sample": "S33", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.S33_L005_R2.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R2_001.fastq.gz 4594238747 FASTQ S33_L005_R2 submitted_unaligned CPTAC3 0ab3da5d-77b9-4e92-9f76-6de8335f806c e352ab48dc933a7486ab6f95471e0aa9 {"aliquot_tag": "ALQ_e439493c", "sample": "S33", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.S34_R1.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R1_001.fastq.gz 4669979169 FASTQ S34_R1 submitted_unaligned CPTAC3 fa2a18f8-f6e5-434a-a47d-92595f328edb 6377ca1c5d3a534c2f3dfb621a411c89 {"aliquot_tag": "ALQ_a083d2d5", "sample": "S34", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.S34_R2.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R2_001.fastq.gz 4905232569 FASTQ S34_R2 submitted_unaligned CPTAC3 3c0a9850-ad52-4df8-8449-cbddde626e78 c8562e1f6a04856a19349211bdda6709 {"aliquot_tag": "ALQ_a083d2d5", "sample": "S34", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.transcriptome.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.transcriptome.gdc_realn.bam 11820614277 BAM transcriptome harmonized CPTAC3 6a0bc772-928b-4fb9-93ee-7112e22207f3 d1496164951c73c1d9e279992271737f {"aliquot_tag": "ALQ_e439493c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.RNA-Seq.transcriptome.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.transcriptome.gdc_realn.bam 3607972004 BAM transcriptome harmonized CPTAC3 80a3e5aa-8b03-4c8b-b703-5a53888975fa e07c9b7d354a71c60b8fa647e4ab0884 {"aliquot_tag": "ALQ_a083d2d5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.WGS.N C3N-02274 UCEC WGS blood_normal CPT0182440002 CPT0182440002.WholeGenome.RP-1303.bam 63746783618 BAM submitted_aligned CPTAC3 216bb0b4-f3b2-46ad-b083-f859f84f99f2 de1c63c0dded340d9972b8c0fc3ad60f {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02274.WGS.N.hg38 C3N-02274 UCEC WGS blood_normal CPT0182440002 c478da9b-c518-4ec9-be48-b5114cabc73e_wgs_gdc_realn.bam 94294832961 BAM harmonized CPTAC3 fdda9b8c-ca7c-4eec-b994-14e6506abfb2 2cd6d0bfd7812e5bccbc733167f49c37 {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02274.WGS.T C3N-02274 UCEC WGS tumor CPT0182380007 CPT0182380007.WholeGenome.RP-1303.bam 68470778995 BAM submitted_aligned CPTAC3 3440cfa4-f5c1-46d6-b816-dfb911a87a3e 9715dece973b91991c183fa0889c8fe0 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.WGS.T.hg38 C3N-02274 UCEC WGS tumor CPT0182380007 d38314a9-18e1-44f3-b3fc-7060dbca65cc_wgs_gdc_realn.bam 97350232558 BAM harmonized CPTAC3 65e06700-120d-4479-b8ca-e31955450d69 230894b72551339b8e837d12e012bfae {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.WXS.N C3N-02274 UCEC WXS blood_normal CPT0182440002 CPT0182440002.WholeExome.RP-1303.bam 31016821150 BAM submitted_aligned CPTAC3 1978d384-0508-4bf9-a804-c7ed5a5a7eb0 72001abb6f27b2718e426593bb58ab4e {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02274.WXS.N.hg38 C3N-02274 UCEC WXS blood_normal CPT0182440002 c478da9b-c518-4ec9-be48-b5114cabc73e_wxs_gdc_realn.bam 42273899595 BAM harmonized CPTAC3 44147ef1-f2c0-4d6d-851c-a911a4ddab43 62d9b539bc97e433b1b30991fe9ffa82 {"aliquot_tag": "ALQ_cbd9c4e8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02274.WXS.T C3N-02274 UCEC WXS tumor CPT0182380007 CPT0182380007.WholeExome.RP-1303.bam 22386069315 BAM submitted_aligned CPTAC3 50c82140-3307-479c-9b17-3c2c30a76f77 e55169d02050a653efdd17d25ba7c481 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02274.WXS.T.hg38 C3N-02274 UCEC WXS tumor CPT0182380007 d38314a9-18e1-44f3-b3fc-7060dbca65cc_wxs_gdc_realn.bam 31469198714 BAM harmonized CPTAC3 d322e5c0-6fca-42e1-96a6-5e0fc92df4e5 9726a419d29e6af95b9ae37fcf1f2e05 {"aliquot_tag": "ALQ_6346edde", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02275.MethArray.Green.T C3N-02275 HNSCC Methylation_Array tumor CPT0163740007 203273200155_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ab806c28-9698-4ad1-8c10-4d5037955f00 a81884a1f45810b93f020f1da96f617f {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.MethArray.Red.T C3N-02275 HNSCC Methylation_Array tumor CPT0163740007 203273200155_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 6f861b07-afbd-4041-9239-5a155e73f917 e955fab43e89d9b3bf657e661b3fe91a {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.miRNA-Seq.A.hg38 C3N-02275 HNSCC miRNA-Seq tissue_normal CPT0163720006 dbd3c18c-26f3-4005-9d08-f71258254ad5_mirnaseq_gdc_realn.bam 268611532 BAM harmonized CPTAC3 8f0df4b3-29f6-440a-9e8f-8ffe30110dea ade1fb001c91b672fe3f2432c3582d3a {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02275.miRNA-Seq.S35_L002_R1.T C3N-02275 HNSCC miRNA-Seq tumor CPT0163740013 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L002_R1_001.unaln.bam 241516062 BAM S35_L002_R1 submitted_unaligned CPTAC3 41c4af52-895e-42ca-a163-d2dbdba6a30f f32caf75458e6cd17bbfb44bfd292fca {"aliquot_tag": "ALQ_90acae17", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.miRNA-Seq.S4_L001_R1.A C3N-02275 HNSCC miRNA-Seq tissue_normal CPT0163720006 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L001_R1_001.unaln.bam 235813637 BAM S4_L001_R1 submitted_unaligned CPTAC3 56f5b5c3-a8ff-4fea-b1bf-654cfc0df1da 376802d757a2b688387f33b410b187b4 {"aliquot_tag": "ALQ_769d9e79", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02275.miRNA-Seq.T.hg38 C3N-02275 HNSCC miRNA-Seq tumor CPT0163740013 a4f118b5-8c7a-4f83-ade6-143704c36fb7_mirnaseq_gdc_realn.bam 296804470 BAM harmonized CPTAC3 b7c21ea3-609f-4e68-95e0-3550c0f9166d b66207c7c18b135f35635793bfda0b0c {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.chimeric.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.chimeric.gdc_realn.bam 187621702 BAM chimeric harmonized CPTAC3 2384ce2c-2c28-4405-a4da-942f63c89a8f 11951fa4aaf0bd50ee4f8d5e67fa28a0 {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02275.RNA-Seq.chimeric.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.chimeric.gdc_realn.bam 147591960 BAM chimeric harmonized CPTAC3 d76a2d60-6e9b-4956-9bbb-8dfc64254479 0d00edc17b50bd1c6443586c8bec6308 {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.chimeric.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.chimeric.gdc_realn.bam 283249404 BAM chimeric harmonized CPTAC3 36a0d914-e84f-4bd7-978f-1476299811bf bc9743554e41a858c4264a3400140314 {"aliquot_tag": "ALQ_7affa0b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.genomic.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.genomic.gdc_realn.bam 8843741287 BAM genomic harmonized CPTAC3 8eed690d-e359-47cd-a218-2a0bf3dc2d1d af48153a5cc1f58fae3eb7d74fff88e8 {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02275.RNA-Seq.genomic.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.genomic.gdc_realn.bam 6680793373 BAM genomic harmonized CPTAC3 d7176b18-b637-4de5-b5e6-f0ca49ce6883 76dc11239d455456a37ad63b67606f36 {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.genomic.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.genomic.gdc_realn.bam 15643866834 BAM genomic harmonized CPTAC3 9446adfd-b078-4b38-92b5-6d0b712b3e54 87b3aa790c4faa44fd25f2c9fb0bfae0 {"aliquot_tag": "ALQ_7affa0b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.S1_L001_R1.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 2937103692 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 398fb651-ba38-45ea-8785-3e8fa30cd8c4 2cbfeebb89635853ef2845ab9d76d08f {"aliquot_tag": "ALQ_90acae17", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.S1_L001_R2.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 3387393769 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 bb5e47dc-06a3-43fc-85e7-d273a0c2a520 3306018f7ba2906cff79ffd5c3531027 {"aliquot_tag": "ALQ_90acae17", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.S4_L001_R1.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R1_001.fastq.gz 4009322703 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 040116b3-617f-4218-8f85-acb108ac7e81 76f2c0f3563ba2f9315f56bc64d007cf {"aliquot_tag": "ALQ_769d9e79", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02275.RNA-Seq.S4_L001_R2.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R2_001.fastq.gz 4279251231 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 c71afded-40ae-469f-889e-ecc642a169c6 62743f8fda7ffe00d07c9f474ba2a593 {"aliquot_tag": "ALQ_769d9e79", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02275.RNA-Seq.S77_R1.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R1_001.fastq.gz 11656395803 FASTQ S77_R1 submitted_unaligned CPTAC3 1de73f95-7b69-44d8-95b6-04acbf709a3a 9d5ca6329c9425a5f9d48b2621a274e5 {"aliquot_tag": "ALQ_7affa0b7", "sample": "S77", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.S77_R2.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R2_001.fastq.gz 12073659426 FASTQ S77_R2 submitted_unaligned CPTAC3 3a2a36b9-e3d1-432c-b5be-d199207b3aa2 2a6cb585bb5386620e6e393da63a17cf {"aliquot_tag": "ALQ_7affa0b7", "sample": "S77", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.transcriptome.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.transcriptome.gdc_realn.bam 9634510680 BAM transcriptome harmonized CPTAC3 7c4d700c-70e4-4c29-a91f-aa770a7f7b3d 4cba6d636607c36593e4ab36bca51b27 {"aliquot_tag": "ALQ_769d9e79", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02275.RNA-Seq.transcriptome.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.transcriptome.gdc_realn.bam 8468579301 BAM transcriptome harmonized CPTAC3 24648398-981d-4adc-a69e-e715f28fa62c 5e597dc6653104e2bf2938609f53856f {"aliquot_tag": "ALQ_90acae17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.RNA-Seq.transcriptome.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.transcriptome.gdc_realn.bam 12006150402 BAM transcriptome harmonized CPTAC3 32c2cb34-e4b0-4593-a60b-3cf9dd0467a3 efd280c62b98b2fb7ba0bebfc6dc97c3 {"aliquot_tag": "ALQ_7affa0b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.WGS.N C3N-02275 HNSCC WGS blood_normal CPT0163780002 CPT0163780002.WholeGenome.RP-1303.bam 68574069168 BAM submitted_aligned CPTAC3 08d0aeab-6217-44af-a7a4-e7e4141bc681 7cbadbfecd4246a66c10b0dffbd33b4f {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02275.WGS.N.hg38 C3N-02275 HNSCC WGS blood_normal CPT0163780002 02977102-9859-41f2-a8d4-089f6cff43cd_wgs_gdc_realn.bam 100390524184 BAM harmonized CPTAC3 c47644d9-4c56-4081-9c6a-0f6dad3a6ef5 8e9de5aa8f1a12e9384cb60fd9edcc78 {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02275.WGS.T C3N-02275 HNSCC WGS tumor CPT0163740007 CPT0163740007.WholeGenome.RP-1303.bam 80591152209 BAM submitted_aligned CPTAC3 2574f176-29ea-486d-aba0-cdaed14d8a58 5f910effda981982df5d017ecd7e76b9 {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.WGS.T.hg38 C3N-02275 HNSCC WGS tumor CPT0163740007 24ce24cc-3d67-49d6-af28-d453465da942_wgs_gdc_realn.bam 119030681136 BAM harmonized CPTAC3 01860a0d-9da1-43ff-a2fa-c7aeb775a538 fe23229f61682144006acb5c60aacf9d {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.WXS.N C3N-02275 HNSCC WXS blood_normal CPT0163780002 CPT0163780002.WholeExome.RP-1303.bam 20835810189 BAM submitted_aligned CPTAC3 b1519096-721c-44f4-a655-589a26c87e6c d354be011c2e677d9cfba6002d4c114d {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02275.WXS.N.hg38 C3N-02275 HNSCC WXS blood_normal CPT0163780002 02977102-9859-41f2-a8d4-089f6cff43cd_wxs_gdc_realn.bam 28131023584 BAM harmonized CPTAC3 4dad8cda-80c7-4acd-a416-f9e5b689ef79 8ebfe6912ffabca61607a1bd50123365 {"aliquot_tag": "ALQ_3b4042c1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02275.WXS.T C3N-02275 HNSCC WXS tumor CPT0163740007 CPT0163740007.WholeExome.RP-1303.bam 25890815846 BAM submitted_aligned CPTAC3 8f6dd8dd-e0ae-4b3d-a2c0-bff3920e3705 132bd658cfd0b2227abcacdc6583ba0b {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02275.WXS.T.hg38 C3N-02275 HNSCC WXS tumor CPT0163740007 24ce24cc-3d67-49d6-af28-d453465da942_wxs_gdc_realn.bam 35964698774 BAM harmonized CPTAC3 cf8500b3-7b6b-48c8-8dc7-00f414d2976b 813afb58cbe178eeb8b6064c463867b2 {"aliquot_tag": "ALQ_8eda5b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.MethArray.Green.A C3N-02279 HNSCC Methylation_Array tissue_normal CPT0163800006 203281980258_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c671f58a-533e-4660-9b5a-e198e5d5b593 23189693e9ad20b05eeef80e7ab70107 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.MethArray.Green.T C3N-02279 HNSCC Methylation_Array tumor CPT0163790006 203219650096_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d073aa5d-0e38-479d-a61b-de253c52620c 9fc4e665159ff9da54664bef053833ad {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.MethArray.Red.A C3N-02279 HNSCC Methylation_Array tissue_normal CPT0163800006 203281980258_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 21cbc5f4-44fb-465e-8f2e-5e0e311547f0 b72bfb4a63c208a8d9e37aff3c988bd2 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.MethArray.Red.T C3N-02279 HNSCC Methylation_Array tumor CPT0163790006 203219650096_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 c28802e4-ecd9-4860-ac84-3433ca5a6e11 0075c59be1ace2bd861aa5b568307635 {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.miRNA-Seq.A.hg38 C3N-02279 HNSCC miRNA-Seq tissue_normal CPT0163800009 dadd3a0e-420b-4928-901f-c43d35ba0bac_mirnaseq_gdc_realn.bam 202958753 BAM harmonized CPTAC3 efccc198-3353-4420-b037-7039cbe4e422 4702c725032650c7c05a6032208364af {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.miRNA-Seq.S17_L001_R1.A C3N-02279 HNSCC miRNA-Seq tissue_normal CPT0163800009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L001_R1_001.unaln.bam 185497050 BAM S17_L001_R1 submitted_unaligned CPTAC3 4c34f560-3374-488f-b32d-d02dd743abb9 9972d8e5fd515f91251c354dbf0ff680 {"aliquot_tag": "ALQ_6db4625d", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.miRNA-Seq.S32_L002_R1.T C3N-02279 HNSCC miRNA-Seq tumor CPT0163790009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L002_R1_001.unaln.bam 219363353 BAM S32_L002_R1 submitted_unaligned CPTAC3 56c5d70d-15b5-4bec-98bb-f0754c8dcb19 17d591371cb98bf63c743b4da3a0de16 {"aliquot_tag": "ALQ_91f2b2f9", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.miRNA-Seq.T.hg38 C3N-02279 HNSCC miRNA-Seq tumor CPT0163790009 eb0169ff-a7ad-4604-b4e3-014e2f189350_mirnaseq_gdc_realn.bam 251717006 BAM harmonized CPTAC3 aca6ac17-10e4-4ae4-89f1-197492cb37b4 0fa06f2ea83013560df776885b4871cb {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.chimeric.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.chimeric.gdc_realn.bam 166077066 BAM chimeric harmonized CPTAC3 7e6815e9-8d9f-4a85-b21f-e6fb99dce8c3 66fd041a4ea873a4da254fe46c214543 {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.RNA-Seq.chimeric.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.chimeric.gdc_realn.bam 284209077 BAM chimeric harmonized CPTAC3 aa5cb9a9-1345-4468-bde3-76d52c5fc783 394a860f8825e16c93798f1b6f52ae83 {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.chimeric.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.chimeric.gdc_realn.bam 85432863 BAM chimeric harmonized CPTAC3 1dcfcace-e898-4f9b-8dbc-6ea0d7fc9450 ec3f6f494872bcebf545901fa6b9fe0a {"aliquot_tag": "ALQ_dcd42f97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.genomic.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.genomic.gdc_realn.bam 9455613937 BAM genomic harmonized CPTAC3 ef8ca72c-7c27-4b9f-bae2-a0ba9eeeedc9 920e9b3c2e171247f027fa413f56d114 {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.RNA-Seq.genomic.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.genomic.gdc_realn.bam 7794138345 BAM genomic harmonized CPTAC3 8abda2b9-172a-4d0a-9117-85be0742dd92 a2b5e9445097494c85b4593e451a97e1 {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.genomic.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.genomic.gdc_realn.bam 6679630882 BAM genomic harmonized CPTAC3 61a54a0d-43e7-4081-936a-ff241c275a12 9231f2d847e4c2b8cc7be3c176a23c53 {"aliquot_tag": "ALQ_dcd42f97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.S12_L003_R1.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R1_001.fastq.gz 4308676850 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 23d0ebbf-e11d-4f60-9feb-4309f33e138d 2893521f5a95151726b34199d4d75ef3 {"aliquot_tag": "ALQ_6db4625d", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.RNA-Seq.S12_L003_R2.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R2_001.fastq.gz 4922645370 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 19859e6c-d4e5-48ed-9b1a-ca851ca52ae4 7ee3f02535279eea93fd9343b819836e {"aliquot_tag": "ALQ_6db4625d", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.RNA-Seq.S72_R1.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R1_001.fastq.gz 4679599672 FASTQ S72_R1 submitted_unaligned CPTAC3 8b6f4685-3e00-465f-9bb7-eb7c8486cbdc 49f4058424948d4b7d92fcf122342a6c {"aliquot_tag": "ALQ_dcd42f97", "sample": "S72", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.S72_R2.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R2_001.fastq.gz 4861223681 FASTQ S72_R2 submitted_unaligned CPTAC3 97da9260-a2d7-4733-8992-31d59e7fcdcb 786cc51d4671f1be3bc460cf2c046f58 {"aliquot_tag": "ALQ_dcd42f97", "sample": "S72", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.S7_L008_R1.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3777560170 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 5790c14a-7d2c-4d4c-b317-582fdb290e19 d3d2582937b3ca05ad1507e6bc7085ee {"aliquot_tag": "ALQ_91f2b2f9", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.S7_L008_R2.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 4170241292 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 61c16e4d-4598-41ad-ace3-a4ef8ecaeaa3 8b527f86a1565a732df619d4712c0e58 {"aliquot_tag": "ALQ_91f2b2f9", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.transcriptome.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.transcriptome.gdc_realn.bam 13256796003 BAM transcriptome harmonized CPTAC3 a9f96d1c-ebcf-445e-8f2d-a7cef965c1d3 0989096a1c457f965e3c332e3b0f9116 {"aliquot_tag": "ALQ_6db4625d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.RNA-Seq.transcriptome.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.transcriptome.gdc_realn.bam 11357438264 BAM transcriptome harmonized CPTAC3 f5268749-77c5-4144-817b-073a77c87c68 53d96c013461e7aae2386f35d7f75a9d {"aliquot_tag": "ALQ_91f2b2f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.RNA-Seq.transcriptome.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.transcriptome.gdc_realn.bam 6152849827 BAM transcriptome harmonized CPTAC3 40e928d5-d8a5-45a5-81d9-31f403506b30 263f54d55d201f0a4e76db3d21e7c013 {"aliquot_tag": "ALQ_dcd42f97", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.WGS.N C3N-02279 HNSCC WGS blood_normal CPT0163830002 CPT0163830002.WholeGenome.RP-1303.bam 58442437684 BAM submitted_aligned CPTAC3 50dc9c68-a86e-40c9-bf89-331f2276cb15 1cec86e23ba3fdf11eed458fb839406c {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02279.WGS.N.hg38 C3N-02279 HNSCC WGS blood_normal CPT0163830002 99137d4f-1ecb-4abd-a812-4774f6cf0077_wgs_gdc_realn.bam 85364042656 BAM harmonized CPTAC3 adcc2a18-410c-4048-8135-197da04d8795 4b41418bfbc8d0b54da02dd123763ead {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02279.WGS.T C3N-02279 HNSCC WGS tumor CPT0163790006 CPT0163790006.WholeGenome.RP-1303.bam 68012707910 BAM submitted_aligned CPTAC3 15b0e2bd-fe7b-4c39-ba0c-6681668eaa29 ca239a4a6d799cb98422a66ca09e2b1d {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.WGS.T.hg38 C3N-02279 HNSCC WGS tumor CPT0163790006 6b857303-8eda-414f-9ad5-7f6a8ba109c9_wgs_gdc_realn.bam 100544071805 BAM harmonized CPTAC3 ad9fc28b-fc3b-456f-8ed9-b0477d7f8413 20c4c130b72288a5fdfa531f89a9b649 {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.WXS.A C3N-02279 HNSCC WXS tissue_normal CPT0163800006 CPT0163800006.WholeExome.RP-1303.bam 20979882890 BAM submitted_aligned CPTAC3 ac03b624-3bf6-493b-9a61-975d6a90b4b5 bc6aad26c7c58dccf79625caad9e47b2 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.WXS.A.hg38 C3N-02279 HNSCC WXS tissue_normal CPT0163800006 4c454769-e24a-4f43-b9a3-61b66a026a24_wxs_gdc_realn.bam 28839835368 BAM harmonized CPTAC3 88e5012b-7cc2-4b34-b594-3453a8fdc300 5fa6ace7d72c00d1e14cd321122c0611 {"aliquot_tag": "ALQ_fd0b7fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02279.WXS.N C3N-02279 HNSCC WXS blood_normal CPT0163830002 CPT0163830002.WholeExome.RP-1303.bam 29667058556 BAM submitted_aligned CPTAC3 0f0480e0-5484-40b5-aaf9-e8e5603933a2 e37da286973ef36d6323825ae84c92a7 {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02279.WXS.N.hg38 C3N-02279 HNSCC WXS blood_normal CPT0163830002 99137d4f-1ecb-4abd-a812-4774f6cf0077_wxs_gdc_realn.bam 40323949343 BAM harmonized CPTAC3 e3eb5bf7-cdc8-4e9b-8a32-2a2b900f81e0 4cf50e8506851ed288e8facc953d482c {"aliquot_tag": "ALQ_bdc6c105", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02279.WXS.T C3N-02279 HNSCC WXS tumor CPT0163790006 CPT0163790006.WholeExome.RP-1303.bam 25920412790 BAM submitted_aligned CPTAC3 37da2856-46d6-47f2-9dd8-f07025979864 ebb91ca7b0a6e28b23d9647bedf109fb {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02279.WXS.T.hg38 C3N-02279 HNSCC WXS tumor CPT0163790006 6b857303-8eda-414f-9ad5-7f6a8ba109c9_wxs_gdc_realn.bam 35982935845 BAM harmonized CPTAC3 5dca8da1-8dcc-4316-a7cf-21b54b3dbcfa 9f3df6daeb971e55c8b823c2b6bbceea {"aliquot_tag": "ALQ_14daf68", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.MethArray.Green.A C3N-02281 LUAD Methylation_Array tissue_normal CPT0125430006 203220070082_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d186bd5d-0c27-4818-a96f-60484d317078 b7dec1dbd55e5dc3cf43f3532604902f {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.MethArray.Green.T C3N-02281 LUAD Methylation_Array tumor CPT0125410007 203219650042_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 25970af8-ebd0-402f-b19a-f55a6adbb9a3 f3e344f797a060f8bda4f3764615dafd {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.MethArray.Red.A C3N-02281 LUAD Methylation_Array tissue_normal CPT0125430006 203220070082_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 6f234dfb-f129-4b46-861e-e86fc3047b58 ec2e730bef786511401f6bdad5e4d496 {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.MethArray.Red.T C3N-02281 LUAD Methylation_Array tumor CPT0125410007 203219650042_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 09cda54b-550c-442c-85ae-b9593eb8e633 452cab46d4a0e5c57d8ad25da1490bc3 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.miRNA-Seq.A.hg38 C3N-02281 LUAD miRNA-Seq tissue_normal CPT0125430009 880c7fa4-4d21-4ddd-944a-93ba863a3e8d_mirnaseq_gdc_realn.bam 247936755 BAM harmonized CPTAC3 56bd5702-9510-4389-87bb-ac725a4480d0 9e1baba8975d8ce85dc3ef85ae6cf94c {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.miRNA-Seq.S13_L004_R1.T C3N-02281 LUAD miRNA-Seq tumor CPT0125410010 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTCAA_S13_L004_R1_001.unaln.bam 190110257 BAM S13_L004_R1 submitted_unaligned CPTAC3 009eaeab-e392-4c73-9604-c866d63de0f9 a6c92737e780a14fd9ed959796e4c10c {"aliquot_tag": "ALQ_a04b39b3", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.miRNA-Seq.S3_L004_R1.A C3N-02281 LUAD miRNA-Seq tissue_normal CPT0125430009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L004_R1_001.unaln.bam 224429851 BAM S3_L004_R1 submitted_unaligned CPTAC3 feae3f5d-83e0-422b-805f-fb30a516b17a 8328178004de9ed12047a1eee6d97df0 {"aliquot_tag": "ALQ_ba4ce336", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.miRNA-Seq.T.hg38 C3N-02281 LUAD miRNA-Seq tumor CPT0125410010 4949602d-2dc0-404c-9e3e-8c6da447394a_mirnaseq_gdc_realn.bam 205117376 BAM harmonized CPTAC3 fe2e75df-a976-41a8-a080-e81b8086fe98 a6864a098e0403305f3f0ef4d55502c2 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.RNA-Seq.chimeric.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.chimeric.gdc_realn.bam 33203760 BAM chimeric harmonized CPTAC3 37b88442-6ff0-412f-b63e-a2fff248653f ae22382d5d4eed7bbfdb1aa49745f82f {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.RNA-Seq.chimeric.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.chimeric.gdc_realn.bam 45036502 BAM chimeric harmonized CPTAC3 8d490c16-44de-4add-8174-4424d7f62a84 35cbdced3ff64031472c461a9a69b564 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.RNA-Seq.genomic.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.genomic.gdc_realn.bam 9888368408 BAM genomic harmonized CPTAC3 cc784c10-1105-4417-b562-7bc35bdea15d a2bf3417c144b7749b184dc53ce02189 {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.RNA-Seq.genomic.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.genomic.gdc_realn.bam 8203962418 BAM genomic harmonized CPTAC3 3a84bf68-5f2c-4e13-b6d1-bfa4d0d547e6 8f2ea98ada4882680e4ac609a1454877 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.RNA-Seq.S2_L007_R1.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4032956462 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 f685ad18-72c1-485a-88b1-b9e30fc85df8 4e5cbba8e57463b37f145eda515dd8ae {"aliquot_tag": "ALQ_ba4ce336", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.RNA-Seq.S2_L007_R2.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R2_001.fastq.gz 3969347389 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 a9293f07-a5f3-4d53-895d-c4a3ed9f51f1 4fd1fc34f2e3578f316ecadc609f0359 {"aliquot_tag": "ALQ_ba4ce336", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.RNA-Seq.S9_L004_R1.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R1_001.fastq.gz 3430704335 FASTQ S9_L004_R1 submitted_unaligned CPTAC3 1da3b0ea-41c6-45f1-baa1-32ff4b3b1296 f66e4fef03cbad90eb45836380b75b32 {"aliquot_tag": "ALQ_a04b39b3", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.RNA-Seq.S9_L004_R2.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R2_001.fastq.gz 3682548491 FASTQ S9_L004_R2 submitted_unaligned CPTAC3 9fc7e956-14f9-4adf-80d7-3696cc4b3ee4 d35bcfd6a8a9aeabe3494e8ffe239e83 {"aliquot_tag": "ALQ_a04b39b3", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.RNA-Seq.transcriptome.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.transcriptome.gdc_realn.bam 9954847995 BAM transcriptome harmonized CPTAC3 12e981c9-3bee-4d29-8583-f157fd7c57cb 9d1793eab241ba24d102aa39eac2a195 {"aliquot_tag": "ALQ_ba4ce336", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.RNA-Seq.transcriptome.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.transcriptome.gdc_realn.bam 9199442095 BAM transcriptome harmonized CPTAC3 7abf7d28-b236-4d5e-8090-bb93ee173fe6 5f4e4899242b9b8e951a86f9a0c36226 {"aliquot_tag": "ALQ_a04b39b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.WGS.N C3N-02281 LUAD WGS blood_normal CPT0126370002 CPT0126370002.WholeGenome.RP-1303.bam 127725562907 BAM submitted_aligned CPTAC3 01b29078-1007-4d5c-8325-722222cb2654 170e258c98d6ecc93dcbac7d12458226 {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02281.WGS.N.hg38 C3N-02281 LUAD WGS blood_normal CPT0126370002 eee93c9f-9262-4282-8d2a-0578765798f1_wgs_gdc_realn.bam 183811379400 BAM harmonized CPTAC3 7f737b76-e356-4e8d-8e69-6cc4cdf24de6 46bde155dff03c8ba7bd056b15e12cc1 {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02281.WGS.T C3N-02281 LUAD WGS tumor CPT0125410007 CPT0125410007.WholeGenome.RP-1303.bam 52336193366 BAM submitted_aligned CPTAC3 9729575f-8df3-4af0-9850-e90357b48560 e7110f4e7dc6e215db9c82381f2118c6 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.WGS.T.hg38 C3N-02281 LUAD WGS tumor CPT0125410007 e3bad720-d2a3-4514-b00a-6cfab2c5671c_wgs_gdc_realn.bam 77147732149 BAM harmonized CPTAC3 8f692508-a0f6-4275-831e-c32c175a45c9 47d3a12b0994c051d46e853b160161f7 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.WXS.A C3N-02281 LUAD WXS tissue_normal CPT0125430006 CPT0125430006.WholeExome.RP-1303.bam 22955184779 BAM submitted_aligned CPTAC3 66a6de7d-94d0-415c-94c5-96b12b11f14f e4cb5df1915116ace7a284eb7002c743 {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.WXS.A.hg38 C3N-02281 LUAD WXS tissue_normal CPT0125430006 9136e9eb-ef1a-422f-a73c-61e21270b0e8_wxs_gdc_realn.bam 32398817672 BAM harmonized CPTAC3 db2c9d8a-ac5a-4abb-b313-6277daf95aa1 508284809c67a375fafbb15a922a69e1 {"aliquot_tag": "ALQ_2af3fea7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02281.WXS.N C3N-02281 LUAD WXS blood_normal CPT0126370002 CPT0126370002.WholeExome.RP-1303.bam 24024845909 BAM submitted_aligned CPTAC3 df391c4c-b200-4f5c-8b4b-7a3a1add7ee0 4eb953802f35329d55f0a1a2a888e2ca {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02281.WXS.N.hg38 C3N-02281 LUAD WXS blood_normal CPT0126370002 eee93c9f-9262-4282-8d2a-0578765798f1_wxs_gdc_realn.bam 32925229422 BAM harmonized CPTAC3 8f5e0dfc-b9e8-4c58-bbdf-3b3cd7e9f122 e9c41076564af15cbfa721a81794bbe2 {"aliquot_tag": "ALQ_f4f3b65b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02281.WXS.T C3N-02281 LUAD WXS tumor CPT0125410007 CPT0125410007.WholeExome.RP-1303.bam 20486961036 BAM submitted_aligned CPTAC3 5d6d3a56-21da-4e7c-b922-d992f25ef468 91d779cd3c88b72f77660c325e80a237 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02281.WXS.T.hg38 C3N-02281 LUAD WXS tumor CPT0125410007 e3bad720-d2a3-4514-b00a-6cfab2c5671c_wxs_gdc_realn.bam 28639624310 BAM harmonized CPTAC3 32e6910d-e07c-46c8-a8fb-d19fec7b18b3 44ebf64342f63b8bacc35144f0124ce3 {"aliquot_tag": "ALQ_27349d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.MethArray.Green.A C3N-02282 LUAD Methylation_Array tissue_normal CPT0125370006 203219760074_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9f4c6463-4da7-4273-80e9-dd01f75d25a7 6bc3c75da2e8279fb32644aaf4a7a06d {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.MethArray.Green.T C3N-02282 LUAD Methylation_Array tumor CPT0125360006 203219650003_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d19fd641-cd9b-4639-ab67-fa9a87cfdf1c ce2e6c1a79048cd4243137b29b852da8 {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.MethArray.Red.A C3N-02282 LUAD Methylation_Array tissue_normal CPT0125370006 203219760074_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 88cf399e-c819-49d4-abd4-e0ea8cf7c1d2 fb013fdb1429b47389a400c0005bd140 {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.MethArray.Red.T C3N-02282 LUAD Methylation_Array tumor CPT0125360006 203219650003_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 d5993dac-0916-40cd-a58a-a12748ecec1f 23bc28217086a3a1d43a88f0fd5cb32c {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.miRNA-Seq.A.hg38 C3N-02282 LUAD miRNA-Seq tissue_normal CPT0125370009 5f067cb0-9f61-42a8-96bd-7ccdbe22ab6e_mirnaseq_gdc_realn.bam 206476495 BAM harmonized CPTAC3 15912179-7eca-4f63-9156-d22726841c58 d4b6ab0e0063865a88248b356cdfdb63 {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.miRNA-Seq.S12_L004_R1.T C3N-02282 LUAD miRNA-Seq tumor CPT0125360009 190108_UNC31-K00269_0176_AHYGLVBBXX_CTTGTA_S12_L004_R1_001.unaln.bam 254204558 BAM S12_L004_R1 submitted_unaligned CPTAC3 ee60f0c2-ad5d-4fdb-b937-540e6b8afc99 9e74e5f9ea0a254f82a839a20930ca12 {"aliquot_tag": "ALQ_6fa95cfe", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.miRNA-Seq.S2_L004_R1.A C3N-02282 LUAD miRNA-Seq tissue_normal CPT0125370009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L004_R1_001.unaln.bam 185333941 BAM S2_L004_R1 submitted_unaligned CPTAC3 75711f61-033e-4830-a325-44cfdc68131a 1a4bc5ac5f99264101178690bb9e6086 {"aliquot_tag": "ALQ_52c9754e", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.miRNA-Seq.T.hg38 C3N-02282 LUAD miRNA-Seq tumor CPT0125360009 12a9846f-011b-426a-8826-c49850b9d70a_mirnaseq_gdc_realn.bam 294604144 BAM harmonized CPTAC3 24ce12c4-8277-46dc-a9cd-028bc8ff3f27 72d5dd6a63f2b13e4ed666e6a1b0e701 {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.RNA-Seq.chimeric.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.chimeric.gdc_realn.bam 33898275 BAM chimeric harmonized CPTAC3 8dd9ed4b-4e90-407b-80e1-92e0dbc7fe76 6155fdedb18f875412dc4d31559a7d7f {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.RNA-Seq.chimeric.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.chimeric.gdc_realn.bam 57123237 BAM chimeric harmonized CPTAC3 2028a45b-ee7c-4d7d-a21c-c4dc282dd6a9 9cf5ee016ff99a78781137237979ce3d {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.RNA-Seq.genomic.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.genomic.gdc_realn.bam 9096918554 BAM genomic harmonized CPTAC3 14c3de9d-31e0-4fe4-9603-bcc328262951 e2c3f19f108601a7fe4b8a0feb9370ee {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.RNA-Seq.genomic.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.genomic.gdc_realn.bam 11016665539 BAM genomic harmonized CPTAC3 2284bf8e-21aa-4aaf-8381-e34f4d6ea064 10bb8b1bb6f5d05570973fb76c366ea8 {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.RNA-Seq.S3_L007_R1.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4085745493 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 16b48db8-7cbb-4af2-94b5-b658404c20e0 27a710cd00cb4049216b327bfbba4439 {"aliquot_tag": "ALQ_52c9754e", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.RNA-Seq.S3_L007_R2.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R2_001.fastq.gz 3741001751 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 2cef00bf-87fb-4cc3-9f67-7693145b0e01 51f82b6372d74d5fffe5f0f3f6e5f978 {"aliquot_tag": "ALQ_52c9754e", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.RNA-Seq.S4_L001_R1.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4404537471 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 6338da8c-f507-48c2-bba4-2af1ac296264 f18aceac96e479584315bf3586aa7639 {"aliquot_tag": "ALQ_6fa95cfe", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.RNA-Seq.S4_L001_R2.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4930252213 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 7caa8479-13a6-4636-bc5d-93fec5dfcde2 c520abec2035b8e1b50e25ea924486fb {"aliquot_tag": "ALQ_6fa95cfe", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.RNA-Seq.transcriptome.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.transcriptome.gdc_realn.bam 9240302691 BAM transcriptome harmonized CPTAC3 d46f08ce-3408-4524-946d-51b76419ab4a aa26af1418b367b7602d94dd0ce3f2e6 {"aliquot_tag": "ALQ_52c9754e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.RNA-Seq.transcriptome.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.transcriptome.gdc_realn.bam 10932743546 BAM transcriptome harmonized CPTAC3 68c728bc-ee85-4217-80b9-fcf52f072950 da3308af60ae7839019f8d4c50fc824f {"aliquot_tag": "ALQ_6fa95cfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.WGS.N C3N-02282 LUAD WGS blood_normal CPT0125400002 CPT0125400002.WholeGenome.RP-1303.bam 81921335333 BAM submitted_aligned CPTAC3 269f1c9d-6156-4912-b4b2-51891c8ce87c 27a577b49036f9fbf9ca4fc76ba13668 {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02282.WGS.N.hg38 C3N-02282 LUAD WGS blood_normal CPT0125400002 8b5a5693-cd27-4083-9581-3c748292040a_wgs_gdc_realn.bam 118618949521 BAM harmonized CPTAC3 e2b57e57-7458-491d-89d1-5e89648ff462 4eb8e0ef3162e1ba8291018ecbeafc0b {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02282.WGS.T C3N-02282 LUAD WGS tumor CPT0125360006 CPT0125360006.WholeGenome.RP-1303.bam 106521647206 BAM submitted_aligned CPTAC3 f917a8a7-04ba-4dbe-af1b-d28201398a7b f4e5dd0d580b511205e66751fef613fb {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.WGS.T.hg38 C3N-02282 LUAD WGS tumor CPT0125360006 a7ea82bc-eefc-4de3-9673-b023fd390c78_wgs_gdc_realn.bam 153937059160 BAM harmonized CPTAC3 33dfbcc7-8112-4fab-bd91-e5580f636e84 544d64dfc38b318fc7b4b0b9d593ce15 {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.WXS.A C3N-02282 LUAD WXS tissue_normal CPT0125370006 CPT0125370006.WholeExome.RP-1303.bam 28199812366 BAM submitted_aligned CPTAC3 d8eed0bf-afeb-44c6-8b03-bc79ce5e86aa ea10f64f301fff618c6d9c31a99054c8 {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.WXS.A.hg38 C3N-02282 LUAD WXS tissue_normal CPT0125370006 e5633f90-1c9a-42ef-bacc-7e43629d51ba_wxs_gdc_realn.bam 39402377534 BAM harmonized CPTAC3 44a7b7c5-4665-4b51-bd37-ca5066733027 f51df13f000a52bb489b8db43b69322a {"aliquot_tag": "ALQ_c27668df", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02282.WXS.N C3N-02282 LUAD WXS blood_normal CPT0125400002 CPT0125400002.WholeExome.RP-1303.bam 25740370922 BAM submitted_aligned CPTAC3 9ab73ba1-868b-472e-bdf2-361a6750f3b0 701b00e88e70c0987171264a749248e7 {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02282.WXS.N.hg38 C3N-02282 LUAD WXS blood_normal CPT0125400002 8b5a5693-cd27-4083-9581-3c748292040a_wxs_gdc_realn.bam 35160284684 BAM harmonized CPTAC3 91f15acd-1f52-47f3-8a16-3864586136fe a1a45769d2ccaf867c429517b7408e4d {"aliquot_tag": "ALQ_6a3e406e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02282.WXS.T C3N-02282 LUAD WXS tumor CPT0125360006 CPT0125360006.WholeExome.RP-1303.bam 24865379080 BAM submitted_aligned CPTAC3 9b09258e-1267-458c-be58-7c8c440fef39 7975c411f1c2ae4cfa3a4d8baf0fc7ee {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02282.WXS.T.hg38 C3N-02282 LUAD WXS tumor CPT0125360006 a7ea82bc-eefc-4de3-9673-b023fd390c78_wxs_gdc_realn.bam 34061861003 BAM harmonized CPTAC3 7fb26ec0-b1e4-4b21-8aae-83df9d82de46 83c1f921edb3f1155460062bd1c03991 {"aliquot_tag": "ALQ_ff16416f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.MethArray.Green.T C3N-02283 LSCC Methylation_Array tumor CPT0126530006 203219650218_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2f588a92-c90d-4ee0-8316-544532ec0842 004a314aeab41c8d27df1b67cc045c24 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.MethArray.Red.T C3N-02283 LSCC Methylation_Array tumor CPT0126530006 203219650218_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 89d12eff-842b-458c-97f6-d84fe9861eae c5003cf853b1c86c7c47f2a81298f090 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.miRNA-Seq.S23_L001_R1.T C3N-02283 LSCC miRNA-Seq tumor CPT0126530009 181219_UNC31-K00269_0173_BHYGJJBBXX_GGTAGC_S23_L001_R1_001.unaln.bam 217640981 BAM S23_L001_R1 submitted_unaligned CPTAC3 fd55fc86-0fe6-4f65-8670-be376dd092b4 47abf1279c53835dc070d8ee9c78d1a5 {"aliquot_tag": "ALQ_40f82a0e", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.miRNA-Seq.T.hg38 C3N-02283 LSCC miRNA-Seq tumor CPT0126530009 633d890f-672b-4360-85ce-9dcdf33d0da8_mirnaseq_gdc_realn.bam 242378206 BAM harmonized CPTAC3 b3f546a5-5ba4-4a35-a2b5-50884016aab7 497454329f2e7f133cfbe22c82e0010c {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.RNA-Seq.chimeric.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.chimeric.gdc_realn.bam 31831563 BAM chimeric harmonized CPTAC3 c39ee19b-52fc-45a5-a49a-c2cc0597b9fb d4ef16b5afc369952be817e2682759bc {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.RNA-Seq.genomic.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.genomic.gdc_realn.bam 9332805898 BAM genomic harmonized CPTAC3 9c544cbc-4157-45f2-8511-5b6c15b5baed 1a69311934575fe91948c348031cc231 {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.RNA-Seq.S7_L002_R1.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4460676897 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 ebb3c067-6c73-4e96-a828-c824166f7e19 5507d4301c2cebaf87168111ce7018d9 {"aliquot_tag": "ALQ_40f82a0e", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.RNA-Seq.S7_L002_R2.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4753976657 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 188620f0-3a3d-4484-b78d-b275cd775360 51b15353721216095ee0f4b1aad5e5f5 {"aliquot_tag": "ALQ_40f82a0e", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.RNA-Seq.transcriptome.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.transcriptome.gdc_realn.bam 12699192149 BAM transcriptome harmonized CPTAC3 d819103e-797a-47f2-88c8-a64b01fb6f24 244792fceaea88d30b5b1157e19c94e7 {"aliquot_tag": "ALQ_40f82a0e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.WGS.N C3N-02283 LSCC WGS blood_normal CPT0126580002 CPT0126580002.WholeGenome.RP-1303.bam 56423682667 BAM submitted_aligned CPTAC3 2414d0b0-e2dc-4426-849b-3376f23d2b23 7c269cd4abf789b2ce4f45141719db8c {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02283.WGS.N.hg38 C3N-02283 LSCC WGS blood_normal CPT0126580002 19aa271d-2103-4fad-a065-5301809f651f_wgs_gdc_realn.bam 82170772698 BAM harmonized CPTAC3 02d030b5-5b7a-41c9-ba6e-12c6db1eb429 2672bf91fbf6935e5386855fc2c45e48 {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02283.WGS.T C3N-02283 LSCC WGS tumor CPT0126530006 CPT0126530006.WholeGenome.RP-1303.bam 57210718062 BAM submitted_aligned CPTAC3 3ddd7339-c862-43f8-b700-3e99a006f1dd 498876660e25b668d7f33ada37e13617 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.WGS.T.hg38 C3N-02283 LSCC WGS tumor CPT0126530006 4f64e5de-5d18-4635-857d-0c3bbe4ded3e_wgs_gdc_realn.bam 82183960488 BAM harmonized CPTAC3 ac38d38d-ddd0-4fb5-86da-41e05dfa1062 6354f19e097e19df610ed4d3c3a845aa {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.WXS.N C3N-02283 LSCC WXS blood_normal CPT0126580002 CPT0126580002.WholeExome.RP-1303.bam 24382824015 BAM submitted_aligned CPTAC3 13da72f7-f0d6-4307-843a-966f6972ddf6 9d5327a88b9e94775b79777a96d811ce {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02283.WXS.N.hg38 C3N-02283 LSCC WXS blood_normal CPT0126580002 19aa271d-2103-4fad-a065-5301809f651f_wxs_gdc_realn.bam 33603537279 BAM harmonized CPTAC3 af167ea3-342a-4fcd-8a84-580c91dd33f0 c20498f7a52b2a2db4edb728bff42810 {"aliquot_tag": "ALQ_a0fac297", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02283.WXS.T C3N-02283 LSCC WXS tumor CPT0126530006 CPT0126530006.WholeExome.RP-1303.bam 28073393157 BAM submitted_aligned CPTAC3 7ff555cf-88cd-44f7-b169-877797c36b5c 5068a84810ef705164bc2ff3a2472a83 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02283.WXS.T.hg38 C3N-02283 LSCC WXS tumor CPT0126530006 4f64e5de-5d18-4635-857d-0c3bbe4ded3e_wxs_gdc_realn.bam 37544949507 BAM harmonized CPTAC3 a225aefc-324c-43f5-884e-9725d8ca58e0 f4a1529c10fcc38f48b47f770c1a0961 {"aliquot_tag": "ALQ_d047379f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.MethArray.Green.T C3N-02284 LSCC Methylation_Array tumor CPT0126670006 203219640172_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d3a15167-76a1-4697-8bdf-f12435f8c57f e8f3614b4803e1322960f6df11224e13 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.MethArray.Red.T C3N-02284 LSCC Methylation_Array tumor CPT0126670006 203219640172_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 4b9b3eaa-efef-4749-bbdd-24a201f6a409 a7f934130d31f5c0878e8415a66230af {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.miRNA-Seq.S18_L001_R1.T C3N-02284 LSCC miRNA-Seq tumor CPT0126670009 181219_UNC31-K00269_0173_BHYGJJBBXX_GTCCGC_S18_L001_R1_001.unaln.bam 210642649 BAM S18_L001_R1 submitted_unaligned CPTAC3 749cbdfc-9c73-41a2-848e-1bc157f077ce e3f6cf400849e9607942626fe60960e8 {"aliquot_tag": "ALQ_33ecfe60", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.miRNA-Seq.T.hg38 C3N-02284 LSCC miRNA-Seq tumor CPT0126670009 1662a921-df29-47ca-afb6-3140f34d05c8_mirnaseq_gdc_realn.bam 229472610 BAM harmonized CPTAC3 d66c6990-fa00-42b2-b29b-c866291d034c 7c5043bc8231399c7bcf0c97aeab7d48 {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.RNA-Seq.chimeric.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.chimeric.gdc_realn.bam 22308776 BAM chimeric harmonized CPTAC3 b629f164-5444-48e3-9357-a68d83bc5c1c a99ad0fc0a72f355ba555058f195292b {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.RNA-Seq.genomic.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.genomic.gdc_realn.bam 5193125932 BAM genomic harmonized CPTAC3 586accd8-e5bc-4746-9f6e-b9b668685f8b d24884c0a13f547d3306c761a021bc6c {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.RNA-Seq.S2_L001_R1.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 2488873957 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 81ffa1ef-11cc-46aa-885f-221adaf31d29 ce382177f72b28439b41fe2b19750771 {"aliquot_tag": "ALQ_33ecfe60", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.RNA-Seq.S2_L001_R2.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 2647028789 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 79b7cc72-625d-4585-872f-acd84a75a90d 6826e8ea5daa4c7b5188f9f99b6084f9 {"aliquot_tag": "ALQ_33ecfe60", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.RNA-Seq.transcriptome.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.transcriptome.gdc_realn.bam 6884290622 BAM transcriptome harmonized CPTAC3 e44117f2-2e4b-48f1-ab76-2095e9e1948a fa1261079f1cc8d288df422b56bf1e14 {"aliquot_tag": "ALQ_33ecfe60", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.WGS.N C3N-02284 LSCC WGS blood_normal CPT0126730002 CPT0126730002.WholeGenome.RP-1303.bam 68299075959 BAM submitted_aligned CPTAC3 739342b8-92bd-4f17-9227-197c6d5a1744 4b6564a19a3c1e42f27f37c2f36431b9 {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02284.WGS.N.hg38 C3N-02284 LSCC WGS blood_normal CPT0126730002 c791c2be-5334-4d7b-9ab0-91a698b7efb9_wgs_gdc_realn.bam 100197693005 BAM harmonized CPTAC3 34c364ee-f9e4-4e0e-8e9a-52de011021b4 3ec1d2fcae05f9fe011e8b447fa6acef {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02284.WGS.T C3N-02284 LSCC WGS tumor CPT0126670006 CPT0126670006.WholeGenome.RP-1303.bam 60213321314 BAM submitted_aligned CPTAC3 90623410-b0ca-4d69-a2ae-1fa188441cc2 7815d1eec282ed82ed1c6e4567b3ca13 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.WGS.T.hg38 C3N-02284 LSCC WGS tumor CPT0126670006 240bbd6e-5410-4449-a9c1-85d5148ce48d_wgs_gdc_realn.bam 88874339542 BAM harmonized CPTAC3 639eef3a-cbe7-4eb1-9647-f444fe63dd66 8081dcf6335cc03f74888825fbb8e56e {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.WXS.N C3N-02284 LSCC WXS blood_normal CPT0126730002 CPT0126730002.WholeExome.RP-1303.bam 23085356299 BAM submitted_aligned CPTAC3 8e66ec07-03fe-4ae8-bd41-85fc3ad0827e 3593bbb93791b5eb2a084114f7875e94 {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02284.WXS.N.hg38 C3N-02284 LSCC WXS blood_normal CPT0126730002 c791c2be-5334-4d7b-9ab0-91a698b7efb9_wxs_gdc_realn.bam 32164636479 BAM harmonized CPTAC3 595c07fb-051b-4c2a-855b-3ae60dcf59fc a758dc73e45db0388e34d57b8403779f {"aliquot_tag": "ALQ_9ae2528d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02284.WXS.T C3N-02284 LSCC WXS tumor CPT0126670006 CPT0126670006.WholeExome.RP-1303.bam 27103835008 BAM submitted_aligned CPTAC3 9a17bbf1-b964-47f3-8a0f-bae44212f4ea f25694b39287eacde2ed77d4d488eba6 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02284.WXS.T.hg38 C3N-02284 LSCC WXS tumor CPT0126670006 240bbd6e-5410-4449-a9c1-85d5148ce48d_wxs_gdc_realn.bam 37619328887 BAM harmonized CPTAC3 1294fb93-7b37-499b-b572-70b1a6cfcf3e 2078b2388c63a8d33a6625b9740d2e88 {"aliquot_tag": "ALQ_a353e3f1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.MethArray.Green.A C3N-02285 LSCC Methylation_Array tissue_normal CPT0126760006 203219760074_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 36d9f1e6-7842-48ba-9c6f-077f889c6497 819298fbbe732e932485420c423a9598 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.MethArray.Green.T C3N-02285 LSCC Methylation_Array tumor CPT0126740006 203219640095_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 2cf546a0-3b03-4a62-9a90-6fc0a0305093 df0c1695f01dca42d74027d5c27d3245 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.MethArray.Red.A C3N-02285 LSCC Methylation_Array tissue_normal CPT0126760006 203219760074_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 9270783a-6c6f-4ef7-9b39-01b1ddf1e504 76cd0875cf1693254326d3c97779039c {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.MethArray.Red.T C3N-02285 LSCC Methylation_Array tumor CPT0126740006 203219640095_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 d68bcadb-030d-4fac-a5f4-42d14b552d59 cb3389e9631a7a4f7e098cd88e014529 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.miRNA-Seq.A.hg38 C3N-02285 LSCC miRNA-Seq tissue_normal CPT0126760009 0c783189-a677-4f8b-873f-7520635747e0_mirnaseq_gdc_realn.bam 226555259 BAM harmonized CPTAC3 04af56a7-1155-490f-9eb0-1f0f1fcb8908 2b8fbc1848d7c3372e081ba597fcbc80 {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.miRNA-Seq.S13_L001_R1.T C3N-02285 LSCC miRNA-Seq tumor CPT0126740009 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTCAA_S13_L001_R1_001.unaln.bam 286618480 BAM S13_L001_R1 submitted_unaligned CPTAC3 ad1a133b-d777-4b39-bbeb-03d295ae9fa9 5ac62993bc4e7c4dbedf3e3bf68b948a {"aliquot_tag": "ALQ_bf105715", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.miRNA-Seq.S42_L002_R1.A C3N-02285 LSCC miRNA-Seq tissue_normal CPT0126760009 181219_UNC31-K00269_0173_BHYGJJBBXX_TACAGC_S42_L002_R1_001.unaln.bam 204185738 BAM S42_L002_R1 submitted_unaligned CPTAC3 af5b5e44-7421-48e4-81b1-e57a7a2d9ab9 1598dc34260c571399fea9ea4e7d2e87 {"aliquot_tag": "ALQ_c5d00475", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.miRNA-Seq.T.hg38 C3N-02285 LSCC miRNA-Seq tumor CPT0126740009 7dfa1d2f-6172-41ed-bca7-4ecaf97dc785_mirnaseq_gdc_realn.bam 311490689 BAM harmonized CPTAC3 e7bcc159-56f2-476f-a961-58d4a39c1d9e 2df571eea6addb40d311e0db30fdee1f {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.RNA-Seq.chimeric.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.chimeric.gdc_realn.bam 30892936 BAM chimeric harmonized CPTAC3 7aec2d32-8091-4092-baa6-7ae472808c54 01cbfd51ace14debd69bafa971fd9fdb {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.RNA-Seq.chimeric.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.chimeric.gdc_realn.bam 24907459 BAM chimeric harmonized CPTAC3 02e44361-7c11-4d54-9295-a1c51a4cf541 872d5d7b81007d382763d6d2c1349d0f {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.RNA-Seq.genomic.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.genomic.gdc_realn.bam 9715431444 BAM genomic harmonized CPTAC3 4903af37-1c1e-419b-bc9b-c27c2da0e8c3 47a85ade5c82cc9a4b6bd8c69dd37032 {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.RNA-Seq.genomic.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.genomic.gdc_realn.bam 7947460672 BAM genomic harmonized CPTAC3 f3a3a0b0-9af0-48fb-9b1e-5b4b18351764 fbdd7c0f467799611e8ab7a7f61cbad9 {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.RNA-Seq.S1_L007_R1.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4430878992 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 2042bad1-37ed-41c7-892e-5a49fb97a23a 93d176b6c43274618fb6d5d2e25132d9 {"aliquot_tag": "ALQ_c5d00475", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.RNA-Seq.S1_L007_R2.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4534947376 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 20060cbc-b291-43b9-b1a2-179d33db94df 77811c65ac976ba51f625f409d7287be {"aliquot_tag": "ALQ_c5d00475", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.RNA-Seq.S29_L008_R1.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R1_001.fastq.gz 3403190252 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 7a27f21d-0359-4af1-9224-c31b612241b4 4ea0b78523be563070758b630aa28e5c {"aliquot_tag": "ALQ_bf105715", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.RNA-Seq.S29_L008_R2.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R2_001.fastq.gz 3623342067 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 5915e9f4-006f-4912-b6e2-681270b493df 753389079f6550a33edfad7a4da0210a {"aliquot_tag": "ALQ_bf105715", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.RNA-Seq.transcriptome.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.transcriptome.gdc_realn.bam 12030406071 BAM transcriptome harmonized CPTAC3 6ae96d76-d173-4d93-b082-e347d139f6b8 331335fa9c6005205c3ab02ab0ba4011 {"aliquot_tag": "ALQ_c5d00475", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.RNA-Seq.transcriptome.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.transcriptome.gdc_realn.bam 9064346983 BAM transcriptome harmonized CPTAC3 eb3cf5ce-55f6-43e0-b9e6-e3cacc9059d2 b6effc42607139bccd53e57902e31f73 {"aliquot_tag": "ALQ_bf105715", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.WGS.A C3N-02285 LSCC WGS tissue_normal CPT0126760006 CPT0126760006.WholeGenome.RP-1303.bam 65918909815 BAM submitted_aligned CPTAC3 864d3bd9-3a89-44e5-a4b1-dac412323a21 b022018fbd46f308be57d939eb0657c9 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.WGS.A.hg38 C3N-02285 LSCC WGS tissue_normal CPT0126760006 2c412e3e-65bf-4971-b17b-ea46b886860b_wgs_gdc_realn.bam 95219483406 BAM harmonized CPTAC3 c30e6f0d-25d3-45ee-94e7-ab833150ce65 677a22a1ae19f11da80a6b097a47e72c {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.WGS.N C3N-02285 LSCC WGS blood_normal CPT0126800002 CPT0126800002.WholeGenome.RP-1303.bam 54736267633 BAM submitted_aligned CPTAC3 5bea4278-dbce-4c5b-b2c1-1a361b407a2c 1f0203dacbf5a6621bdf4442bf35977e {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02285.WGS.N.hg38 C3N-02285 LSCC WGS blood_normal CPT0126800002 69286d3c-b11d-4671-84fb-50219bfa4a7d_wgs_gdc_realn.bam 78819208763 BAM harmonized CPTAC3 317eb8b8-1298-4c4e-89c9-5bf24a885bc0 9fa50b03d041d339ce005d17f5bceab9 {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02285.WGS.T C3N-02285 LSCC WGS tumor CPT0126740006 CPT0126740006.WholeGenome.RP-1303.bam 64099499788 BAM submitted_aligned CPTAC3 e7f6e3c0-6dce-43c7-ac6c-e182ee78229b 116a415a9f52a59c0a6693b8764bd606 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.WGS.T.hg38 C3N-02285 LSCC WGS tumor CPT0126740006 bc40d70a-933b-4fab-8523-a5abcc82c6b3_wgs_gdc_realn.bam 93975848284 BAM harmonized CPTAC3 8ac1c2de-9499-4719-b141-a4982f55371f 087820c8a9eb8f625f2c6c9e1f90fd69 {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.WXS.A C3N-02285 LSCC WXS tissue_normal CPT0126760006 CPT0126760006.WholeExome.RP-1303.bam 26440400863 BAM submitted_aligned CPTAC3 e3ec480d-37ee-4ab3-a53a-7b22a29eae66 79db8458244a5adb8e3b30eb4f87bf33 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.WXS.A.hg38 C3N-02285 LSCC WXS tissue_normal CPT0126760006 2c412e3e-65bf-4971-b17b-ea46b886860b_wxs_gdc_realn.bam 36947024423 BAM harmonized CPTAC3 14f4df57-0eb5-4ed2-95bf-a9dd29838331 11fc7abe8e9542e601bed4d13e1ce229 {"aliquot_tag": "ALQ_556f19e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02285.WXS.N C3N-02285 LSCC WXS blood_normal CPT0126800002 CPT0126800002.WholeExome.RP-1303.bam 27913977498 BAM submitted_aligned CPTAC3 b38b6ff1-b501-47eb-aca6-2ae93b2d57db d65210c9f750949c5087b7b3d5afe521 {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02285.WXS.N.hg38 C3N-02285 LSCC WXS blood_normal CPT0126800002 69286d3c-b11d-4671-84fb-50219bfa4a7d_wxs_gdc_realn.bam 38522042296 BAM harmonized CPTAC3 c2f3061e-edf4-488b-83fb-72037b2259b5 12b66d3d335b3b6f39ee8ae61f914266 {"aliquot_tag": "ALQ_2c149a88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02285.WXS.T C3N-02285 LSCC WXS tumor CPT0126740006 CPT0126740006.WholeExome.RP-1303.bam 21499700101 BAM submitted_aligned CPTAC3 1527ba71-2f72-4cfd-9fc6-3142a6a72fe4 972b1af6c38e8e3a0b0b4b7240051e7d {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02285.WXS.T.hg38 C3N-02285 LSCC WXS tumor CPT0126740006 bc40d70a-933b-4fab-8523-a5abcc82c6b3_wxs_gdc_realn.bam 29527626071 BAM harmonized CPTAC3 7556f828-482b-42ca-a7ec-9d2a58b36567 98a12b8898f4d20f3630566f3d372b2a {"aliquot_tag": "ALQ_2faf4a84", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02286.MethArray.Green.T C3N-02286 GBM Methylation_Array tumor CPT0244760006 204367490066_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9448d075-581c-4431-930a-0babf71cb6b9 44c3c81ff45a6c4494d103e377888858 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.MethArray.Red.T C3N-02286 GBM Methylation_Array tumor CPT0244760006 204367490066_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 8fd80be3-698a-4666-ae92-d05ef75f53e3 0d34990fc116078631487b743076d295 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.miRNA-Seq.S39_L008_R1.T C3N-02286 GBM miRNA-Seq tumor CPT0244760012 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTATAC_S39_L008_R1_001.unaln.bam 194637823 BAM S39_L008_R1 submitted_unaligned CPTAC3 ae5b5cc2-88f4-4583-966d-adb6dea6c265 325c6af91a3cebd3a17591305f10d080 {"aliquot_tag": "ALQ_2364c8d7", "sample": "S39", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.miRNA-Seq.T.hg38 C3N-02286 GBM miRNA-Seq tumor CPT0244760012 89e53779-3952-48e8-96f5-c8cf72c56aef_mirnaseq_gdc_realn.bam 215338304 BAM harmonized CPTAC3 159b1364-2268-4c9e-81b2-82fcd8cd2b33 93cbddfcba5c9007fd381dec7ed2c240 {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.RNA-Seq.chimeric.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.chimeric.gdc_realn.bam 29702691 BAM chimeric harmonized CPTAC3 68190671-6a04-4391-a854-f810353e7ae7 37d6753015dd9be9af25c774b41d01ed {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.RNA-Seq.genomic.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.genomic.gdc_realn.bam 7540862865 BAM genomic harmonized CPTAC3 b33378e7-69ac-44fa-bacc-98773c52aabf 828b5c10961bf09e944c8aa71ef7c3bb {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.RNA-Seq.S66_L008_R1.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ S66_L008_R1 submitted_unaligned CPTAC3 02665bb1-0f40-4959-9017-1d20d7a15ced f7102e43015cf6a94651d4512fef2730 {"aliquot_tag": "ALQ_2364c8d7", "sample": "S66", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.RNA-Seq.S66_L008_R2.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ S66_L008_R2 submitted_unaligned CPTAC3 80bdd1ba-fe88-4d31-b371-bd54b3859722 25ea3c33b8850b377fba3165b009e7bd {"aliquot_tag": "ALQ_2364c8d7", "sample": "S66", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.RNA-Seq.transcriptome.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.transcriptome.gdc_realn.bam 9388570427 BAM transcriptome harmonized CPTAC3 fd190401-c359-4f1e-a6af-fc01b27c63cc c4cf1b147675125b6de4e47280253b99 {"aliquot_tag": "ALQ_2364c8d7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.WGS.N C3N-02286 GBM WGS blood_normal CPT0244820002 CPT0244820002.WholeGenome.RP-2158.bam 25059198039 BAM submitted_aligned CPTAC3 207b0c66-831f-4fc7-9714-7b9dbc6d286c c51cbf0a58951b20781e066b7f7120f4 {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02286.WGS.N.hg38 C3N-02286 GBM WGS blood_normal CPT0244820002 ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wgs_gdc_realn.bam 77117048003 BAM harmonized CPTAC3 049469de-687c-4e38-bddb-a16aabc783b1 f2731f07a3012f2cd71dda55bcaa1e69 {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02286.WGS.T C3N-02286 GBM WGS tumor CPT0244760006 CPT0244760006.WholeGenome.RP-2158.bam 27211004051 BAM submitted_aligned CPTAC3 5d4e1b94-0bc1-483b-8d13-f163e3aa239c 6e9f41309d1adfc35c4c07d9a3aee9f0 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.WGS.T.hg38 C3N-02286 GBM WGS tumor CPT0244760006 4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wgs_gdc_realn.bam 80364977264 BAM harmonized CPTAC3 513c7439-2b46-4105-ae68-efcee2cdddaf 1ce8ee7be637603ee5a2d23917caf575 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.WXS.N C3N-02286 GBM WXS blood_normal CPT0244820002 CPT0244820002.WholeExome.RP-1303.bam 24861070255 BAM submitted_aligned CPTAC3 fb4d5bbb-2ccc-4536-8810-5b8c26966cc4 0246bff93c17589ea8c8666f3eab8af6 {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02286.WXS.N.hg38 C3N-02286 GBM WXS blood_normal CPT0244820002 ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wxs_gdc_realn.bam 33503551009 BAM harmonized CPTAC3 c4f55a53-fd44-45ee-906c-dc8706ec87b2 939e6b3ba06605284c419588bcaada6f {"aliquot_tag": "ALQ_3ea9ed83", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02286.WXS.T C3N-02286 GBM WXS tumor CPT0244760006 CPT0244760006.WholeExome.RP-1303.bam 22922615721 BAM submitted_aligned CPTAC3 eda81041-c710-4a34-820b-0ac80720e269 c29266412aaa7d5ae57db800e304ea49 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02286.WXS.T.hg38 C3N-02286 GBM WXS tumor CPT0244760006 4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wxs_gdc_realn.bam 31977769095 BAM harmonized CPTAC3 1ef99148-c0f0-49c4-a112-d11db3c629f6 a892d971b5caa5a83c6e13ddee0fa4b1 {"aliquot_tag": "ALQ_3d123d8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02288.MethArray.Green.A C3N-02288 LSCC Methylation_Array tissue_normal CPT0186140009 203219720203_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2a8a3e31-31b6-4e2e-8056-a1df8856353a 1a3d60ea4f31422ab180049a056a0895 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.MethArray.Green.T C3N-02288 LSCC Methylation_Array tumor CPT0186130006 203219650221_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 9c93e9c3-1b0a-452b-bab7-4625307d62f5 69c3cf7ebd828a1e9d2c0898eb2cfa7c {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.MethArray.Red.A C3N-02288 LSCC Methylation_Array tissue_normal CPT0186140009 203219720203_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 74846311-5323-4e0a-afd6-e3b01a1e0a6f 9ad6c3fad32e054d22e828c448987bbf {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.MethArray.Red.T C3N-02288 LSCC Methylation_Array tumor CPT0186130006 203219650221_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 3d2ac0f2-bc97-4c1f-92d3-6748589a02ea 5ba67f466061c8390fae63d1da3dca0d {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.miRNA-Seq.A.hg38 C3N-02288 LSCC miRNA-Seq tissue_normal CPT0186140006 6d96a6b0-0d4d-4bcd-a48b-7070ce0b4e77_mirnaseq_gdc_realn.bam 242295509 BAM harmonized CPTAC3 bb4645df-9751-43c3-9969-95571f4eec61 dad031e100fcdd39dfbcb2c7361c0430 {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.miRNA-Seq.S10_L003_R1.T C3N-02288 LSCC miRNA-Seq tumor CPT0186130009 181219_UNC31-K00269_0173_BHYGJJBBXX_TAGCTT_S10_L003_R1_001.unaln.bam 255309304 BAM S10_L003_R1 submitted_unaligned CPTAC3 dc29d675-c5b8-41dc-89b1-cda14bdf10b6 5c9fbe17c2cab9eaca6672f4726dffb5 {"aliquot_tag": "ALQ_4aa974d0", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.miRNA-Seq.S41_L004_R1.A C3N-02288 LSCC miRNA-Seq tissue_normal CPT0186140006 181219_UNC31-K00269_0173_BHYGJJBBXX_TAATCG_S41_L004_R1_001.unaln.bam 213053571 BAM S41_L004_R1 submitted_unaligned CPTAC3 65cb2405-b68b-4342-9c6d-b488f8ea4f27 d12b22c6961ed5945c9c64351042d760 {"aliquot_tag": "ALQ_6836b551", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.miRNA-Seq.T.hg38 C3N-02288 LSCC miRNA-Seq tumor CPT0186130009 0e6cf7d4-670b-4a8b-a394-eab87460fb1e_mirnaseq_gdc_realn.bam 285139256 BAM harmonized CPTAC3 efa7533d-a060-4811-aea9-98de1a2d65b5 0ccdaed971b9f81e27ac4513af579fd5 {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.RNA-Seq.chimeric.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.chimeric.gdc_realn.bam 171861783 BAM chimeric harmonized CPTAC3 9919a659-5f8f-4989-8a52-fdb0ab486d46 cd026fda6a9515ad8e5748cb6482f4af {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.RNA-Seq.chimeric.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.chimeric.gdc_realn.bam 194002847 BAM chimeric harmonized CPTAC3 d9fc2e49-0229-4ba4-9bdb-727efc5e2748 1429126908b2cb5a7995ad42c88656a8 {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.RNA-Seq.genomic.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.genomic.gdc_realn.bam 7793449514 BAM genomic harmonized CPTAC3 0840a2ea-971d-4f0c-862b-635dba0dc411 dd55ca2a7537301913261e76d9df0550 {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.RNA-Seq.genomic.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.genomic.gdc_realn.bam 8988142053 BAM genomic harmonized CPTAC3 4f095c02-6af2-4c31-aba9-346f6f7951d3 a463f78dc476d8b37106faf160c67cdb {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.RNA-Seq.S11_L003_R1.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4108950066 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 39642b1f-d674-4058-b22d-5448545cbd46 b00c3056566ca04f211815dcf75c1efb {"aliquot_tag": "ALQ_4aa974d0", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.RNA-Seq.S11_L003_R2.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4354401745 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 86afbf0b-e1b7-486d-b31b-429499453873 2711881c05a79ba40f8ed2454feef2b6 {"aliquot_tag": "ALQ_4aa974d0", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.RNA-Seq.S22_L007_R1.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R1_001.fastq.gz 3836916330 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 6cbd08c2-d1b5-4b79-bbdd-123cd1403623 34fe8e405ac19137568836f9b3d5b723 {"aliquot_tag": "ALQ_6836b551", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.RNA-Seq.S22_L007_R2.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R2_001.fastq.gz 3804114781 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 832340aa-ac2d-4625-aeb4-46ef85ee706f 00cd0a5674461a319d8b745fb4d7b987 {"aliquot_tag": "ALQ_6836b551", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.RNA-Seq.transcriptome.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.transcriptome.gdc_realn.bam 10874547104 BAM transcriptome harmonized CPTAC3 0fb2cd9b-d2af-47ff-8ce5-41887d748bd1 256e97b8861dc2c16c95de649ab404c8 {"aliquot_tag": "ALQ_6836b551", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.RNA-Seq.transcriptome.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.transcriptome.gdc_realn.bam 10252716605 BAM transcriptome harmonized CPTAC3 71f384f7-540f-4926-a36d-acd2f6ae8c64 c8b55d981c96bccaa573d6822ab7edcc {"aliquot_tag": "ALQ_4aa974d0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.WGS.A C3N-02288 LSCC WGS tissue_normal CPT0186140009 CPT0186140009.WholeGenome.RP-1303.bam 65549342706 BAM submitted_aligned CPTAC3 a9d473b6-b610-4a1e-94d8-e14d5cd1c13f b73c198599e6ca032dbc1efa3baea71a {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.WGS.A.hg38 C3N-02288 LSCC WGS tissue_normal CPT0186140009 77dcf4fd-f121-474e-a7bf-f6b8d238e0f3_wgs_gdc_realn.bam 94654764151 BAM harmonized CPTAC3 484c7d93-f8f4-40a2-93dd-850690b74dea 5911edd054d80cbcf323c0bd73916694 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.WGS.N C3N-02288 LSCC WGS blood_normal CPT0186170002 CPT0186170002.WholeGenome.RP-1303.bam 60846224942 BAM submitted_aligned CPTAC3 c5617e53-b7ae-4d8e-8f50-9a59c21aea81 b7226bafb628939ea5c4db13d1ed0edc {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02288.WGS.N.hg38 C3N-02288 LSCC WGS blood_normal CPT0186170002 c7123429-3c8d-423a-9a61-67c733b83348_wgs_gdc_realn.bam 87640373571 BAM harmonized CPTAC3 f257631d-13a7-4807-b1d6-663ef1a49a24 0b5b7d21b982c55d86d4e150e60110e9 {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02288.WGS.T C3N-02288 LSCC WGS tumor CPT0186130006 CPT0186130006.WholeGenome.RP-1303.bam 71483683638 BAM submitted_aligned CPTAC3 84509c4b-f6ab-4758-a6bb-d67f7d791681 5004f1bd475cb607e631194888aa9cd6 {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.WGS.T.hg38 C3N-02288 LSCC WGS tumor CPT0186130006 7f25c67f-5bde-4d63-908b-8eb7a373a396_wgs_gdc_realn.bam 103111141547 BAM harmonized CPTAC3 904e2495-cb20-4d9a-98de-e9d0a82ac17d d017721413cba092c2e45e0cc8d0beb8 {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.WXS.A C3N-02288 LSCC WXS tissue_normal CPT0186140009 CPT0186140009.WholeExome.RP-1303.bam 30235272713 BAM submitted_aligned CPTAC3 b7400d0f-eed1-40b5-b5d6-bd858d344901 25c1b6d64d93b3f61384dca4b282dc71 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.WXS.A.hg38 C3N-02288 LSCC WXS tissue_normal CPT0186140009 77dcf4fd-f121-474e-a7bf-f6b8d238e0f3_wxs_gdc_realn.bam 42003392336 BAM harmonized CPTAC3 5bd715da-4b2d-4899-b6c6-2343ac0c2b98 1e753fbb3fff24171e604a21d0b73352 {"aliquot_tag": "ALQ_f889a8c0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02288.WXS.N C3N-02288 LSCC WXS blood_normal CPT0186170002 CPT0186170002.WholeExome.RP-1303.bam 22577348315 BAM submitted_aligned CPTAC3 8815ee08-f3b0-4506-8fba-b0b3f154a534 9cb1133b19adf2535443aa5e5923e30a {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02288.WXS.N.hg38 C3N-02288 LSCC WXS blood_normal CPT0186170002 c7123429-3c8d-423a-9a61-67c733b83348_wxs_gdc_realn.bam 31185327883 BAM harmonized CPTAC3 4c312282-97da-44e1-8846-29ce79da0f50 afccf420b88aa390cfc4644748bf814c {"aliquot_tag": "ALQ_28fb0b98", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02288.WXS.T C3N-02288 LSCC WXS tumor CPT0186130006 CPT0186130006.WholeExome.RP-1303.bam 27639974245 BAM submitted_aligned CPTAC3 ad7d4a68-fce9-4078-aa7c-ff1a4151d90b c94577c27e290dbebacf4bc448574ad4 {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02288.WXS.T.hg38 C3N-02288 LSCC WXS tumor CPT0186130006 7f25c67f-5bde-4d63-908b-8eb7a373a396_wxs_gdc_realn.bam 38383363311 BAM harmonized CPTAC3 9dbdc003-0c3d-496a-80e7-294fc3d5accd 8e6cb07334b11d47b66c2fdbdcdfda5e {"aliquot_tag": "ALQ_da166941", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.MethArray.Green.A C3N-02289 LSCC Methylation_Array tissue_normal CPT0186210009 203219650098_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 13842716-d8ba-4e86-86f7-bc2f89219507 4cf41462a5251fc04175297e3501c811 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.MethArray.Green.T C3N-02289 LSCC Methylation_Array tumor CPT0186180006 203219650164_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 eb8a9df6-6b76-4da0-9d48-d27e58192f41 1be81ee5b0b8b9f42f871cdadb7b16ce {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.MethArray.Red.A C3N-02289 LSCC Methylation_Array tissue_normal CPT0186210009 203219650098_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 6b33d24c-e3d5-4524-bdbc-387f725c26b5 3c3097a571e00dce6759f13c171637e6 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.MethArray.Red.T C3N-02289 LSCC Methylation_Array tumor CPT0186180006 203219650164_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 d80c16bd-b187-476e-b803-43b3df8a48df 026b90df4eeaeaa9d51fcd2d29532bc5 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.miRNA-Seq.A.hg38 C3N-02289 LSCC miRNA-Seq tissue_normal CPT0186210006 54f8307b-d960-4e66-a985-ced5d5b1a509_mirnaseq_gdc_realn.bam 261551113 BAM harmonized CPTAC3 971f863c-6fd0-4daa-b7b4-df50015faf0f a375ff1cdd4c0b8109893c609bce3b9d {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.miRNA-Seq.S11_L003_R1.T C3N-02289 LSCC miRNA-Seq tumor CPT0186180009 181219_UNC31-K00269_0173_BHYGJJBBXX_GGCTAC_S11_L003_R1_001.unaln.bam 260277747 BAM S11_L003_R1 submitted_unaligned CPTAC3 ffc7d7a1-793c-4731-84fc-d92ba51d1981 7745d43be02e0c75aec710e056a7d020 {"aliquot_tag": "ALQ_3d7945c1", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.miRNA-Seq.S42_L004_R1.A C3N-02289 LSCC miRNA-Seq tissue_normal CPT0186210006 181219_UNC31-K00269_0173_BHYGJJBBXX_TACAGC_S42_L004_R1_001.unaln.bam 236409589 BAM S42_L004_R1 submitted_unaligned CPTAC3 5d0b8624-44c8-4611-bfd7-444809c71bfb ded326a25fee59c9a17936687a77dd46 {"aliquot_tag": "ALQ_2642488f", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.miRNA-Seq.T.hg38 C3N-02289 LSCC miRNA-Seq tumor CPT0186180009 7c15a804-aa0d-4248-92b1-5d48439a3f13_mirnaseq_gdc_realn.bam 284074002 BAM harmonized CPTAC3 41c2b411-800c-4c70-856d-bd17abd6cf53 318f7467497ef92007b7420db86877c3 {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.RNA-Seq.chimeric.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.chimeric.gdc_realn.bam 153690925 BAM chimeric harmonized CPTAC3 f1bc418d-c9e8-4178-8126-2417f5d752b5 46741f63b9f5299de025e84073b4b6b5 {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.RNA-Seq.chimeric.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.chimeric.gdc_realn.bam 134169252 BAM chimeric harmonized CPTAC3 2d290c00-fed2-4930-8545-2fba2f3d6040 94ec1f7cbf0fc2e0cfab66b55a1c963b {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.RNA-Seq.genomic.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.genomic.gdc_realn.bam 10411293073 BAM genomic harmonized CPTAC3 15d7f68f-5227-4cd4-b19f-4ef6dda9c640 7a03af8e49b0a37f8d70807765abd957 {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.RNA-Seq.genomic.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.genomic.gdc_realn.bam 8242419388 BAM genomic harmonized CPTAC3 df8f520a-ceda-43cb-aa92-076bc9aac573 2f0c4f4b4f0894b35cb4fcfde260484f {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.RNA-Seq.S21_L007_R1.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R1_001.fastq.gz 4566801454 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 b569607b-6b14-4fdf-922f-54ffd96052d8 d1180359a760e31fa2fb73f60c9a4b7a {"aliquot_tag": "ALQ_2642488f", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.RNA-Seq.S21_L007_R2.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R2_001.fastq.gz 4647899124 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 5365e6d1-d92c-4836-9fe8-6bafc8e4783a 53ca5bb70719203944f89e93694227e5 {"aliquot_tag": "ALQ_2642488f", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.RNA-Seq.S9_L003_R1.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 3595918954 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 571b4286-222c-4875-811a-e8279e5795c9 4e2402b2ba932f6900bd96befa277789 {"aliquot_tag": "ALQ_3d7945c1", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.RNA-Seq.S9_L003_R2.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 3936810574 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 61105949-6c4a-45ca-ab05-87f6e4f36f7f e7af0e6869fc0d2f3f01977de850fdd2 {"aliquot_tag": "ALQ_3d7945c1", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.RNA-Seq.transcriptome.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.transcriptome.gdc_realn.bam 13612297468 BAM transcriptome harmonized CPTAC3 d77c709b-f84a-4d0f-8f1b-7a84cd2be74e 86a3859bdb96f9529709b7d29e97bbe6 {"aliquot_tag": "ALQ_2642488f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.RNA-Seq.transcriptome.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.transcriptome.gdc_realn.bam 10734979923 BAM transcriptome harmonized CPTAC3 e6067bed-9d79-490f-80cb-df6261e2c764 1a868ac9c8e73adbf33799488de3963b {"aliquot_tag": "ALQ_3d7945c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.WGS.A C3N-02289 LSCC WGS tissue_normal CPT0186210009 CPT0186210009.WholeGenome.RP-1303.bam 61184896525 BAM submitted_aligned CPTAC3 fa905caa-3731-4985-aeb5-5ffe5c52b6ca 4db84d811f513ed36be929f5d434a28d {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.WGS.A.hg38 C3N-02289 LSCC WGS tissue_normal CPT0186210009 483a4ac7-2f2a-4352-b5e8-1943c694a982_wgs_gdc_realn.bam 89308880551 BAM harmonized CPTAC3 7e83903d-f9cc-41dc-a765-e75102ab90d2 164be83f3297a615283ef16b71a942fa {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.WGS.N C3N-02289 LSCC WGS blood_normal CPT0186960002 CPT0186960002.WholeGenome.RP-1303.bam 55599605777 BAM submitted_aligned CPTAC3 e9cfa218-1a25-4abe-b554-9d6f99c1c238 704dd893a9797ea1927c55ca2005afff {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02289.WGS.N.hg38 C3N-02289 LSCC WGS blood_normal CPT0186960002 d174d5b0-e1a6-4c90-9d07-707541183a9b_wgs_gdc_realn.bam 80974065111 BAM harmonized CPTAC3 277cecf8-934f-4317-b124-1c1eea975962 875f5c678e357d47cd4ed6cdee442632 {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02289.WGS.T C3N-02289 LSCC WGS tumor CPT0186180006 CPT0186180006.WholeGenome.RP-1303.bam 79479181286 BAM submitted_aligned CPTAC3 9af6971f-1b84-4534-8b64-7937259e4e08 b0409a987b5f2229e08c2adf6bcbcb39 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.WGS.T.hg38 C3N-02289 LSCC WGS tumor CPT0186180006 45f472fc-d103-4071-935b-35f943d1b608_wgs_gdc_realn.bam 115695591446 BAM harmonized CPTAC3 d26fbee3-5d8e-4119-988d-c11b53aa5e02 c00a21919d3fc36f7d98935e13beece9 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.WXS.A C3N-02289 LSCC WXS tissue_normal CPT0186210009 CPT0186210009.WholeExome.RP-1303.bam 20282515895 BAM submitted_aligned CPTAC3 3a7aec47-762f-402c-81e1-9a02774ce297 9bbd3563ae66f722ea4a45fc1d30bf64 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.WXS.A.hg38 C3N-02289 LSCC WXS tissue_normal CPT0186210009 483a4ac7-2f2a-4352-b5e8-1943c694a982_wxs_gdc_realn.bam 28282548065 BAM harmonized CPTAC3 23e57ede-a5fe-4858-bcbe-5372eca192ba 92f38270a0852d7ba68b3efa9cd38447 {"aliquot_tag": "ALQ_b6fd551e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02289.WXS.N C3N-02289 LSCC WXS blood_normal CPT0186960002 CPT0186960002.WholeExome.RP-1303.bam 28716065777 BAM submitted_aligned CPTAC3 c83f8ebe-a9a6-4dce-97c7-b40da56dc127 848d53fc4c8044e569059bb8900453f3 {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02289.WXS.N.hg38 C3N-02289 LSCC WXS blood_normal CPT0186960002 d174d5b0-e1a6-4c90-9d07-707541183a9b_wxs_gdc_realn.bam 40606121413 BAM harmonized CPTAC3 899a7f1c-1488-4359-99ed-7369191b8979 90433665e621b64ecfe7f6ed6b6018b9 {"aliquot_tag": "ALQ_f9c8a045", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02289.WXS.T C3N-02289 LSCC WXS tumor CPT0186180006 CPT0186180006.WholeExome.RP-1303.bam 25757585739 BAM submitted_aligned CPTAC3 033e8364-c85c-45cc-8ee2-c07a97d5a8ee 1a5dd9a98f664a14e4525c91ec4c1f11 {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02289.WXS.T.hg38 C3N-02289 LSCC WXS tumor CPT0186180006 45f472fc-d103-4071-935b-35f943d1b608_wxs_gdc_realn.bam 35860070447 BAM harmonized CPTAC3 92db6b44-4d33-4e85-88fd-f84a30b6cb7c 86857134b6019175c51b7a5bc459a7ed {"aliquot_tag": "ALQ_adc65850", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.MethArray.Green.A C3N-02290 LUAD Methylation_Array tissue_normal CPT0187030005 203219670066_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5fa16dcd-cf3c-4683-89ad-c3bbbffea4ab 303f521fae3879239e216c250f742648 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.MethArray.Green.T C3N-02290 LUAD Methylation_Array tumor CPT0187010006 203219670019_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1cd3b874-1f0a-4daa-8a59-48cb3c7b4905 1b1c58393f6327263144f985d88aec20 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.MethArray.Red.A C3N-02290 LUAD Methylation_Array tissue_normal CPT0187030005 203219670066_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 ecb3d91b-0643-4f44-902e-343c1a80bc37 b44a5360ad6ae8e7297d75f876865a84 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.MethArray.Red.T C3N-02290 LUAD Methylation_Array tumor CPT0187010006 203219670019_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e22eb5d2-94da-4f80-b4b1-bc1245a9cd5a 3d85edda44e4782b9cee46f060ba5898 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.miRNA-Seq.A.hg38 C3N-02290 LUAD miRNA-Seq tissue_normal CPT0187030007 b7a1dfa0-ffc2-4a86-9e8b-85058bc7488d_mirnaseq_gdc_realn.bam 276156920 BAM harmonized CPTAC3 f1370279-eb12-4f6e-a5af-2e75a8b736e0 55bd2ea06bdd2593a81a9005f863f72f {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.miRNA-Seq.S17_L006_R1.A C3N-02290 LUAD miRNA-Seq tissue_normal CPT0187030007 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L006_R1_001.unaln.bam 250825290 BAM S17_L006_R1 submitted_unaligned CPTAC3 da028fb8-5332-492c-94a7-018c9e7ef442 c9a6fa3c0c873c5aead81b69b82077a0 {"aliquot_tag": "ALQ_c03a81c6", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.miRNA-Seq.S2_L008_R1.T C3N-02290 LUAD miRNA-Seq tumor CPT0187010009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L008_R1_001.unaln.bam 141555039 BAM S2_L008_R1 submitted_unaligned CPTAC3 4d368481-cbcd-47f8-88fb-a98500c2fa59 99d3a54dd4ee33d0945d0e1c9fc301e2 {"aliquot_tag": "ALQ_5d42ffa1", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.miRNA-Seq.T.hg38 C3N-02290 LUAD miRNA-Seq tumor CPT0187010009 20d5558b-3f69-4bf8-8ba4-dec0e365c778_mirnaseq_gdc_realn.bam 153949128 BAM harmonized CPTAC3 5dc5dc46-a129-40ff-85f7-4b21d4df4e65 0167c3bcb52c02382db42326118ab591 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.RNA-Seq.chimeric.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.chimeric.gdc_realn.bam 61119857 BAM chimeric harmonized CPTAC3 255a157f-2597-43b3-b4d1-8dd4003263b6 9bde9a3aadd2447e782927736d3c071f {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.RNA-Seq.chimeric.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.chimeric.gdc_realn.bam 319390924 BAM chimeric harmonized CPTAC3 f75ed3a2-d693-40e4-8d9f-98607ffa0e8e 7f7caa75df91de98a36f965ecf01f071 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.RNA-Seq.genomic.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.genomic.gdc_realn.bam 9967250337 BAM genomic harmonized CPTAC3 549a1f70-7a5e-4856-b408-10d0c42f4a1e 456ccd387b114b2e2cf9130d1294f4f8 {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.RNA-Seq.genomic.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.genomic.gdc_realn.bam 10317323419 BAM genomic harmonized CPTAC3 fccd315f-0ca6-48af-bc29-f1084ef81178 111af0e8e6e7bff92ec6a24823df6f86 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.RNA-Seq.S16_L005_R1.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R1_001.fastq.gz 4595508039 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 e3a96a81-b8e8-4b23-ad10-88cea613702b 981263d3e01edbc1467b7d8e58c5ff59 {"aliquot_tag": "ALQ_c03a81c6", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.RNA-Seq.S16_L005_R2.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R2_001.fastq.gz 4678562004 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 1a160126-dc86-454c-836f-0a8062bb21ea 1eecce4db886f19b3dad5cea5a2c40e0 {"aliquot_tag": "ALQ_c03a81c6", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.RNA-Seq.S23_L007_R1.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R1_001.fastq.gz 4690579368 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9 7dbf9403dd76cf4b94fa644785f10696 {"aliquot_tag": "ALQ_5d42ffa1", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.RNA-Seq.S23_L007_R2.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R2_001.fastq.gz 4522792261 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 ac88605a-47e9-408e-aca0-7ee694936066 dfb99106cf9c02e003a4dc34f2f10303 {"aliquot_tag": "ALQ_5d42ffa1", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.RNA-Seq.transcriptome.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.transcriptome.gdc_realn.bam 11848976371 BAM transcriptome harmonized CPTAC3 c2105d71-e9b1-45b9-a380-ee674ff7078c e5eed3fbd15c73fe6e7d6d681c79b880 {"aliquot_tag": "ALQ_c03a81c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.RNA-Seq.transcriptome.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.transcriptome.gdc_realn.bam 11680336882 BAM transcriptome harmonized CPTAC3 b602f2f7-7e81-4041-a75e-325dd5ac76b5 d9dfa5b59c02addf1dd143869f24ddf4 {"aliquot_tag": "ALQ_5d42ffa1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.WGS.N C3N-02290 LUAD WGS blood_normal CPT0187070002 CPT0187070002.WholeGenome.RP-1303.bam 127695492391 BAM submitted_aligned CPTAC3 6c5725b5-ccdd-4e10-b320-52f0063105d7 8f3352f176ec125617f8308596ba83b6 {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02290.WGS.N.hg38 C3N-02290 LUAD WGS blood_normal CPT0187070002 73ca30a6-3d6a-4c8b-96e5-991564146108_wgs_gdc_realn.bam 184225340399 BAM harmonized CPTAC3 02edb76d-23b0-42b7-a452-b92739131516 e2763438d4d04c73f2d36a649b9cc1eb {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02290.WGS.T C3N-02290 LUAD WGS tumor CPT0187010006 CPT0187010006.WholeGenome.RP-1303.bam 87571459270 BAM submitted_aligned CPTAC3 ed95c59c-0f3c-4484-bb25-5c0352e6e1a9 af6a1dd0de7c6efa17dcadafc95d9f53 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.WGS.T.hg38 C3N-02290 LUAD WGS tumor CPT0187010006 801d75b8-016b-4a06-9af7-6f00a9449d66_wgs_gdc_realn.bam 125446074964 BAM harmonized CPTAC3 481faef8-8d03-4082-978b-d55cb373fd4f a77741ae746674b78f4ee185b6259989 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.WXS.A C3N-02290 LUAD WXS tissue_normal CPT0187030005 CPT0187030005.WholeExome.RP-1303.bam 29693053255 BAM submitted_aligned CPTAC3 f672d6a4-c3db-4d0b-95e4-9d71417ac8cf 595ece5c54e70addae42b38c4457ca08 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.WXS.A.hg38 C3N-02290 LUAD WXS tissue_normal CPT0187030005 871b29fb-3af5-4a09-abc0-f11504688d46_wxs_gdc_realn.bam 40756044421 BAM harmonized CPTAC3 cc87aa40-2e4d-49b1-b6e5-22e222a3542c ba6585e109947cfe5b95b5f09b736cb8 {"aliquot_tag": "ALQ_2e34e0ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02290.WXS.N C3N-02290 LUAD WXS blood_normal CPT0187070002 CPT0187070002.WholeExome.RP-1303.bam 18101199887 BAM submitted_aligned CPTAC3 bf08ee39-d0c4-434d-aa3f-e0252314d504 2969e5e79a76bb916adf17d92b224860 {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02290.WXS.N.hg38 C3N-02290 LUAD WXS blood_normal CPT0187070002 73ca30a6-3d6a-4c8b-96e5-991564146108_wxs_gdc_realn.bam 24224851770 BAM harmonized CPTAC3 dca076f4-1d01-45a0-b937-193cefeb4201 b7b13160551c01df000e2d6a046079d0 {"aliquot_tag": "ALQ_45d0d389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02290.WXS.T C3N-02290 LUAD WXS tumor CPT0187010006 CPT0187010006.WholeExome.RP-1303.bam 26472199775 BAM submitted_aligned CPTAC3 8f34a887-9b82-46d4-9d3e-6526f8c8ea26 74641a0f06c781ae203232c55f7e4f54 {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02290.WXS.T.hg38 C3N-02290 LUAD WXS tumor CPT0187010006 801d75b8-016b-4a06-9af7-6f00a9449d66_wxs_gdc_realn.bam 36846225684 BAM harmonized CPTAC3 0b47cc59-7d97-433a-bfcd-67d71fd01d44 18ec090aa764602c7b330a2824cb12ef {"aliquot_tag": "ALQ_cdfde230", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.MethArray.Green.A C3N-02295 PDA Methylation_Array tissue_normal CPT0187540007 203561450030_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9d883bda-a03a-4515-9e30-38e4d7a6e8a7 105d922c73e3bbb074b0d74962d5f308 {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02295.MethArray.Green.T C3N-02295 PDA Methylation_Array tumor CPT0187550007 203561450084_R01C01_Grn.idat 13676210 IDAT Green NA CPTAC3 8d47a5db-d0a9-483c-a874-c90ac92c7c57 849cdba00af34836e48d135e7a1e06d0 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.MethArray.Red.A C3N-02295 PDA Methylation_Array tissue_normal CPT0187540007 203561450030_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 0678b837-4f14-42e0-807b-a3097d30ea02 0df7673101881e91113e8434b51602d9 {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02295.MethArray.Red.T C3N-02295 PDA Methylation_Array tumor CPT0187550007 203561450084_R01C01_Red.idat 13676210 IDAT Red NA CPTAC3 00db9834-8045-4784-b63d-719f94ac349b 56fe3e0945c9408b7f2c6bd192a0dfe7 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.miRNA-Seq.S48_L006_R1.T C3N-02295 PDA miRNA-Seq tumor CPT0187550010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 250372141 BAM S48_L006_R1 submitted_unaligned CPTAC3 b3e360a6-1aef-455d-9f51-ac8bcafbd0b1 0829c1552006ba77c78703a90c352038 {"aliquot_tag": "ALQ_98c84137", "sample": "S48", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.miRNA-Seq.T.hg38 C3N-02295 PDA miRNA-Seq tumor CPT0187550010 7888ceea-bbbc-42f7-8272-fc00d123fe3b_mirnaseq_gdc_realn.bam 286565023 BAM harmonized CPTAC3 567d9a17-9cb7-4221-9ca8-164533ddb228 f3795d2ccc8690647b97c6b5792d6a8a {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.RNA-Seq.chimeric.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.chimeric.gdc_realn.bam 153719094 BAM chimeric harmonized CPTAC3 f9c05a89-e6a5-4cba-a302-4efdb9794f62 1f22c35892f4e2cf85c1eec62d4bf5cf {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.genomic.gdc_realn.bam 9069892908 BAM genomic harmonized CPTAC3 ac19d24e-8293-47f2-b031-42740349b60a 07d9a3f90bd7e5d2a5cc4ef2c07b691e {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.RNA-Seq.S24_L006_R1.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3742479935 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 14b4b5bd-ba97-4a24-b0d7-0df326984d51 98d16d774f91a9b7de5ad3eb3902b677 {"aliquot_tag": "ALQ_98c84137", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.RNA-Seq.S24_L006_R2.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 3883901902 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 2511ef1a-6268-4f0f-aa35-53e07ae3ec43 8e9a40a7b3f69c7acece27ec06f197cf {"aliquot_tag": "ALQ_98c84137", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.RNA-Seq.transcriptome.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.transcriptome.gdc_realn.bam 8576070402 BAM transcriptome harmonized CPTAC3 963572dc-a16f-463f-a811-9388a8255e12 5ea02305c2371a645fb3409ac5b0eb2d {"aliquot_tag": "ALQ_98c84137", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.WGS.N C3N-02295 PDA WGS blood_normal CPT0187580002 CPT0187580002.WholeGenome.RP-1303.bam 81020343239 BAM submitted_aligned CPTAC3 ed904aab-3df3-44d6-bb02-030cad8ac100 8ce4259c1a75fce3fd56878e6cea7f21 {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02295.WGS.N.hg38 C3N-02295 PDA WGS blood_normal CPT0187580002 2b52e0f0-76f7-450b-9111-2b3620ff77ae_wgs_gdc_realn.bam 117148874345 BAM harmonized CPTAC3 254ba69b-cf57-4383-b912-f0eb2e55ed7e fb24613a6ffbee46dec51ca2dd06ba88 {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02295.WGS.T C3N-02295 PDA WGS tumor CPT0187550007 CPT0187550007.WholeGenome.RP-1303.bam 128946497623 BAM submitted_aligned CPTAC3 b9568d93-4fa2-4d67-bc32-ad2eddacbe41 2e473ce10ab445853c43b135b665122b {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.WGS.T.hg38 C3N-02295 PDA WGS tumor CPT0187550007 7ce7f381-6602-4f47-86ab-125107c222cf_wgs_gdc_realn.bam 188853194552 BAM harmonized CPTAC3 4ca8965e-f646-4db7-8cec-3532197119f0 decaf719e5c7f248faf697b7dea7e0f2 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.WXS.A C3N-02295 PDA WXS tissue_normal CPT0187540007 CPT0187540007.WholeExome.RP-1303.bam 17239033208 BAM submitted_aligned CPTAC3 715067e4-ba81-445f-9b02-07635a68eee6 573f01c77de65e8bf4d515ca64ce41dc {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02295.WXS.A.hg38 C3N-02295 PDA WXS tissue_normal CPT0187540007 d6caa3dd-afef-4946-af54-64a3357970bc_wxs_gdc_realn.bam 23536797529 BAM harmonized CPTAC3 551a8d31-c8ba-43b3-8bad-a3ff4985bed5 726a7e4ac80cf86cc4b2d8a38ffcd8f2 {"aliquot_tag": "ALQ_22d7cc65", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02295.WXS.N C3N-02295 PDA WXS blood_normal CPT0187580002 CPT0187580002.WholeExome.RP-1303.bam 24401623459 BAM submitted_aligned CPTAC3 9e113af0-669f-4a26-8315-a6b0faeed530 61590f17420f83003b77fc5123ec9291 {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02295.WXS.N.hg38 C3N-02295 PDA WXS blood_normal CPT0187580002 2b52e0f0-76f7-450b-9111-2b3620ff77ae_wxs_gdc_realn.bam 33816832444 BAM harmonized CPTAC3 88e500c6-e2ce-4bc8-b6c6-aaffd157039d 2d9c3a3e7bb81c45e4d657665a43482c {"aliquot_tag": "ALQ_974dd5eb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02295.WXS.T C3N-02295 PDA WXS tumor CPT0187550007 CPT0187550007.WholeExome.RP-1303.bam 52238029815 BAM submitted_aligned CPTAC3 309ff49f-b42c-46ac-951c-a78e1d1f9c57 5049cb16c51bc2db7c95ba985e967d67 {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02295.WXS.T.hg38 C3N-02295 PDA WXS tumor CPT0187550007 7ce7f381-6602-4f47-86ab-125107c222cf_wxs_gdc_realn.bam 72687130302 BAM harmonized CPTAC3 3acb49c1-b8a6-4c0e-8c98-d99c7e140617 13443292e4adc598b12fe1c4c16037ce {"aliquot_tag": "ALQ_1fb7e5d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02296.MethArray.Green.T C3N-02296 UCEC Methylation_Array tumor CPT0181750007 203561450023_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 fd97327d-f5dc-4a41-a25d-75c146bab9bf 06556ea6e13d3c4ff83d0f24fe8f391d {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.MethArray.Red.T C3N-02296 UCEC Methylation_Array tumor CPT0181750007 203561450023_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 f5a3664a-ca1b-4ca6-befb-1892dafbd17d 95979243b907d5a3e746cee00daa9fca {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.miRNA-Seq.S11_L001_R1.T C3N-02296 UCEC miRNA-Seq tumor CPT0181750010 190508_UNC31-K00269_0215_BH7FYKBBXY_GGCTAC_S11_L001_R1_001.unaln.bam 222233772 BAM S11_L001_R1 submitted_unaligned CPTAC3 f7144f2c-f7c7-410c-8ae7-e38f46696cc2 b2c317f729edbebaa9ab8e57ab6ce78c {"aliquot_tag": "ALQ_b6d0d506", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.miRNA-Seq.T.hg38 C3N-02296 UCEC miRNA-Seq tumor CPT0181750010 477834f2-9734-4765-b922-41ce2b541168_mirnaseq_gdc_realn.bam 253176962 BAM harmonized CPTAC3 443bb8b5-caa8-4f50-83ac-bc09bd337da6 e6c60e6e4b51c3c2f895acce200717d8 {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.chimeric.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.chimeric.gdc_realn.bam 27333199 BAM chimeric harmonized CPTAC3 cab9c7d6-700a-4382-ae41-87bae3f1579b e5cbaebdbb8b4f5a385bfd68d6ba2f59 {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.chimeric.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.chimeric.gdc_realn.bam 82008474 BAM chimeric harmonized CPTAC3 543ec380-d4b3-4371-82d4-3529d09cbcc6 33c2224bb33ba4a7245c3168c9d95c0b {"aliquot_tag": "ALQ_2617a07b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.genomic.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.genomic.gdc_realn.bam 8000022800 BAM genomic harmonized CPTAC3 893f8c34-e100-466a-a574-6c0c52857987 e57027aae664409abe9d64720d58845f {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.genomic.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.genomic.gdc_realn.bam 6145835613 BAM genomic harmonized CPTAC3 966e69d5-291a-448a-92da-e75c60f8a548 126de7e585cb0c7d41a257653570483f {"aliquot_tag": "ALQ_2617a07b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.S17_L005_R1.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R1_001.fastq.gz 3777809552 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 d4cb0eb7-5743-419d-bf52-2ecd6584adc5 1e71a327fe1963925d6308885bbe8f34 {"aliquot_tag": "ALQ_b6d0d506", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.S17_L005_R2.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R2_001.fastq.gz 4294075307 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 8e279613-4356-438a-bdc4-f2dd0636bfa5 29b035e8644cf14aa8203ef17a5a9b9a {"aliquot_tag": "ALQ_b6d0d506", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.S37_R1.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R1_001.fastq.gz 3925584328 FASTQ S37_R1 submitted_unaligned CPTAC3 fa837b92-9861-4f19-950b-34570bfc26a3 ccc05e9676665f8f54d8eb61708705ee {"aliquot_tag": "ALQ_2617a07b", "sample": "S37", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.S37_R2.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R2_001.fastq.gz 4043349505 FASTQ S37_R2 submitted_unaligned CPTAC3 e3589299-e784-4d69-b135-8429b2b9f4dd 73c5166bd517cf1459fe9b9d09c84538 {"aliquot_tag": "ALQ_2617a07b", "sample": "S37", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.transcriptome.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.transcriptome.gdc_realn.bam 9005006478 BAM transcriptome harmonized CPTAC3 bbe16c89-5b65-46a1-942d-c1d3ca22c1df d6f8b6d973cbfb0b78640bcc2600a53f {"aliquot_tag": "ALQ_b6d0d506", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.RNA-Seq.transcriptome.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.transcriptome.gdc_realn.bam 3491190138 BAM transcriptome harmonized CPTAC3 e78aea99-5030-47c8-ac79-6f593316cc4b 64dabde4c52272bb63d2b85ee59751fe {"aliquot_tag": "ALQ_2617a07b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.WGS.N C3N-02296 UCEC WGS blood_normal CPT0181800002 CPT0181800002.WholeGenome.RP-1303.bam 67991657844 BAM submitted_aligned CPTAC3 e0170187-b9bc-4c22-a231-ac8385394688 0c8a3c17a756215524ec8bbfb25c0d5a {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02296.WGS.N.hg38 C3N-02296 UCEC WGS blood_normal CPT0181800002 38b1683f-1ef5-4461-9b87-8d56ab949bb5_wgs_gdc_realn.bam 101022019618 BAM harmonized CPTAC3 5221bce8-09e9-4a61-a689-239333730b82 687680c11a0b81a256d3e378ac16f765 {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02296.WGS.T C3N-02296 UCEC WGS tumor CPT0181750007 CPT0181750007.WholeGenome.RP-1303.bam 93581911810 BAM submitted_aligned CPTAC3 11757ed4-777c-4c80-920d-e92741ca28bf 5f907be9baed5eeeea1939919812c6ce {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.WGS.T.hg38 C3N-02296 UCEC WGS tumor CPT0181750007 868c6a57-64e0-450f-a151-139f5520286d_wgs_gdc_realn.bam 137328908321 BAM harmonized CPTAC3 b22c50b5-e3ef-48cd-ab42-0d6012bcc5c7 62bd295aaade83e1cfb2e14124d71338 {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.WXS.N C3N-02296 UCEC WXS blood_normal CPT0181800002 CPT0181800002.WholeExome.RP-1303.bam 29179698030 BAM submitted_aligned CPTAC3 a9b0a4bf-c08c-4067-87ca-6de18d429ea3 0499dc2cc0cd93f9cd256b8748303c9e {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02296.WXS.N.hg38 C3N-02296 UCEC WXS blood_normal CPT0181800002 38b1683f-1ef5-4461-9b87-8d56ab949bb5_wxs_gdc_realn.bam 40336658237 BAM harmonized CPTAC3 0dbdc7cc-21ca-4aa0-af91-419701c32f6a b1e739f4fe06226c6b42486bbc056ba3 {"aliquot_tag": "ALQ_7873b8ce", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02296.WXS.T C3N-02296 UCEC WXS tumor CPT0181750007 CPT0181750007.WholeExome.RP-1303.bam 25075013315 BAM submitted_aligned CPTAC3 ee0e9a22-ea1b-4bbb-876c-8ef889cd1fc5 5cf52d37567fd5bced1377d1c49ad5a7 {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02296.WXS.T.hg38 C3N-02296 UCEC WXS tumor CPT0181750007 868c6a57-64e0-450f-a151-139f5520286d_wxs_gdc_realn.bam 35065589363 BAM harmonized CPTAC3 6e957dcc-be9b-43c6-bfab-bf86027c7bcf 2d56fe66a690d2eb8ff49094684948c7 {"aliquot_tag": "ALQ_31af71e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.DUP_685702ad.WGS.T C3N-02298 UCEC WGS tumor CPT0181540011_1 CPT0181540011_1.WholeGenome.RP-1303.bam 84904324723 BAM submitted_aligned CPTAC3 2b5a4b6e-a856-4dbf-926e-53a8d9c87ac6 25a1e13523d61d22892ac0243756e57c {"aliquot_tag": "DUP_685702ad", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.DUP_685702ad.WGS.T.hg38 C3N-02298 UCEC WGS tumor CPT0181540011_1 c4172299-9d30-448b-982f-cea1391d7d05_wgs_gdc_realn.bam 121732677923 BAM harmonized CPTAC3 d1651a46-cc2f-4694-9861-f68ace614190 436625cdeb59cfc4b95932ae414b9513 {"aliquot_tag": "DUP_685702ad", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.MethArray.Green.T C3N-02298 UCEC Methylation_Array tumor CPT0181540011 203561450099_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 eccafdb3-11a8-49f3-9892-141f085e94b2 a9b91535f927787d71d54124f551b179 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.MethArray.Red.T C3N-02298 UCEC Methylation_Array tumor CPT0181540011 203561450099_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 cd149e4d-9e55-47f5-b16e-2aa9bb330598 61f2500e8f1e2d2b645b5729a3cc6652 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.miRNA-Seq.S7_L003_R1.T C3N-02298 UCEC miRNA-Seq tumor CPT0181540014 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGATC_S7_L003_R1_001.unaln.bam 266366872 BAM S7_L003_R1 submitted_unaligned CPTAC3 bde8c5c2-140f-43cd-81ef-a6ba8dbbfbea 88df98548cd23bb86603a35001e680a4 {"aliquot_tag": "ALQ_c11599a4", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.miRNA-Seq.T.hg38 C3N-02298 UCEC miRNA-Seq tumor CPT0181540014 2878a2b4-7f2c-4a0a-bfc2-f254db7e4d6b_mirnaseq_gdc_realn.bam 301883158 BAM harmonized CPTAC3 2657b327-ba5d-46ac-a69c-5d2c65213504 fbd0c98e44a42e4b1c5e99eaec0542c4 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.chimeric.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.chimeric.gdc_realn.bam 41084848 BAM chimeric harmonized CPTAC3 57ce30bc-b294-4c02-97fa-97ffdd771f2d c36d9a837f2d00c093798e1cb3c6f351 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.chimeric.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.chimeric.gdc_realn.bam 205555511 BAM chimeric harmonized CPTAC3 2e781d4b-0c5d-4143-8832-4ea850a1fe89 4008ed7b9e02f27a751a9ac528389fc9 {"aliquot_tag": "ALQ_6561cebe", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.genomic.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.genomic.gdc_realn.bam 8848806046 BAM genomic harmonized CPTAC3 5c7e6c43-2e63-4ea1-af6b-937240b529e9 781f9cbd593d4c3c41899df94d9247d1 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.genomic.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.genomic.gdc_realn.bam 10553987540 BAM genomic harmonized CPTAC3 1389c645-113c-499b-bfa9-606e1020ef93 7eaa4e9d0cda4a8b8279195c0527277a {"aliquot_tag": "ALQ_6561cebe", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.S1_L001_R1.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 4127484729 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 aaca3879-899a-4ddf-b2e9-9024cbda9e71 a1de4415aa2aa4005ea95ac7d5554a0c {"aliquot_tag": "ALQ_c11599a4", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.S1_L001_R2.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4769707164 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 0830ccd3-4258-48b7-835b-cc0fa004644d cf4f2b070042ad9a39dc98824fb8a2b9 {"aliquot_tag": "ALQ_c11599a4", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.S94_R1.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R1_001.fastq.gz 7356800783 FASTQ S94_R1 submitted_unaligned CPTAC3 9edf50c8-0477-49a3-8d0f-fc0a7c92360c 805d7d252336e826cf020048c64ce599 {"aliquot_tag": "ALQ_6561cebe", "sample": "S94", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.S94_R2.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R2_001.fastq.gz 7435454526 FASTQ S94_R2 submitted_unaligned CPTAC3 3e5a9b90-f842-4103-b8a6-d13f8c517ddc 08ace21fd1788b76f5e9e54c994966dc {"aliquot_tag": "ALQ_6561cebe", "sample": "S94", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.transcriptome.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.transcriptome.gdc_realn.bam 13295725310 BAM transcriptome harmonized CPTAC3 f6050ca8-8993-4ec4-a506-6f8a479338bb 3281acdfac41f32df05efd3a25089625 {"aliquot_tag": "ALQ_c11599a4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.RNA-Seq.transcriptome.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.transcriptome.gdc_realn.bam 6868148317 BAM transcriptome harmonized CPTAC3 d053eb02-2140-4582-92b0-061e6c2fc143 d90b4a8adde611ef6e9d5b150d8c43ac {"aliquot_tag": "ALQ_6561cebe", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.WGS.N C3N-02298 UCEC WGS blood_normal CPT0181590002 CPT0181590002.WholeGenome.RP-1303.bam 72470198572 BAM submitted_aligned CPTAC3 3ade8387-9a55-4c4e-aba5-b54e7d394bce 803f002a5dcd2cdf231d03c4488b69bc {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02298.WGS.N.hg38 C3N-02298 UCEC WGS blood_normal CPT0181590002 349b2062-2354-4d2c-b73a-a9edc1b9bb8d_wgs_gdc_realn.bam 105695375521 BAM harmonized CPTAC3 e5ed742b-3d0d-4f0c-b809-01d07b7e2fd4 bd015c33f1078a91c3d2ad9de5224d55 {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02298.WGS.T C3N-02298 UCEC WGS tumor CPT0181540011 CPT0181540011.WholeGenome.RP-1303.bam 24798515329 BAM submitted_aligned CPTAC3 f0aa6400-2b52-4ace-8cd3-d88a1971204a dd6cfa56a9b8b59bd2d1fcd2cf2035bf {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.WGS.T.hg38 C3N-02298 UCEC WGS tumor CPT0181540011 93c0c350-e6ac-4b76-95fd-428c202de743_wgs_gdc_realn.bam 34208668136 BAM harmonized CPTAC3 2174b720-f136-468b-b8ea-c6c5714facb0 583e3a15360f5f8788d04e81353594e8 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.WXS.N C3N-02298 UCEC WXS blood_normal CPT0181590002 CPT0181590002.WholeExome.RP-1303.bam 24952265684 BAM submitted_aligned CPTAC3 a9ca9713-6f48-4e81-bfbe-a1c5fac3fe00 484e9b5cb822492a128d7010d75c74c9 {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02298.WXS.N.hg38 C3N-02298 UCEC WXS blood_normal CPT0181590002 349b2062-2354-4d2c-b73a-a9edc1b9bb8d_wxs_gdc_realn.bam 34012491413 BAM harmonized CPTAC3 816f16bc-4e6a-4cdd-a872-2a7204d4865e 42997a70a50e88acb92bd40ef7952511 {"aliquot_tag": "ALQ_c9fdc961", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02298.WXS.T C3N-02298 UCEC WXS tumor CPT0181540011 CPT0181540011.WholeExome.RP-1303.bam 24798515401 BAM submitted_aligned CPTAC3 74b357c8-b664-4697-8672-d7de315667fe 05f7f981e1cd6af3212e0e45b5de8d8f {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02298.WXS.T.hg38 C3N-02298 UCEC WXS tumor CPT0181540011 93c0c350-e6ac-4b76-95fd-428c202de743_wxs_gdc_realn.bam 34422107369 BAM harmonized CPTAC3 9b01bb2d-5ace-474c-98ee-7e8ae40a26ac 21faa05e8a28ab3b0d1ad440045f7394 {"aliquot_tag": "ALQ_b17f6d2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02300.MethArray.Green.T C3N-02300 LSCC Methylation_Array tumor CPT0126810006 203219640158_R01C01_Grn.idat 13676220 IDAT Green NA CPTAC3 37318126-6477-4a0b-822e-c504c849063c e6897947ab1c666779ce3180282038da {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.MethArray.Red.T C3N-02300 LSCC Methylation_Array tumor CPT0126810006 203219640158_R01C01_Red.idat 13676220 IDAT Red NA CPTAC3 b1347749-faaa-4c61-9d27-2adc5cb1c997 fba38e43efca00e103220b15d84121fd {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.miRNA-Seq.A.hg38 C3N-02300 LSCC miRNA-Seq tissue_normal CPT0126830006 46e75d1f-0d5e-4894-b2e8-463581c71657_mirnaseq_gdc_realn.bam 279117040 BAM harmonized CPTAC3 0d5fd255-5a7d-49d2-8b21-b16102b1f039 56b7316da8d68b590379c604eee2b1aa {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02300.miRNA-Seq.S14_L001_R1.T C3N-02300 LSCC miRNA-Seq tumor CPT0126810009 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTTCC_S14_L001_R1_001.unaln.bam 266061898 BAM S14_L001_R1 submitted_unaligned CPTAC3 175b65f0-9af5-4f74-bb5d-c0f1681b2c01 2c59097fbc8cdd838cb0cdcd3e854cb6 {"aliquot_tag": "ALQ_86a66ab0", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.miRNA-Seq.S43_L002_R1.A C3N-02300 LSCC miRNA-Seq tissue_normal CPT0126830006 181219_UNC31-K00269_0173_BHYGJJBBXX_TATAAT_S43_L002_R1_001.unaln.bam 245466399 BAM S43_L002_R1 submitted_unaligned CPTAC3 2c8ebdee-ab30-471a-ab6a-ff1941c89a33 2542d028592daef839fec1ebcb56f11c {"aliquot_tag": "ALQ_6cd92441", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02300.miRNA-Seq.T.hg38 C3N-02300 LSCC miRNA-Seq tumor CPT0126810009 8d551311-fc57-4c86-ab75-513812df5f04_mirnaseq_gdc_realn.bam 291762804 BAM harmonized CPTAC3 befb31e2-fc29-4ffb-a5ca-4a82c3a1c152 c280309a67b0c2c8e44711af68acd3e7 {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.RNA-Seq.chimeric.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.chimeric.gdc_realn.bam 25333298 BAM chimeric harmonized CPTAC3 1177e410-c6ef-4555-80b6-30c5e7c0d3f6 085c28325d3e3cd3e72ea7c7b2368286 {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02300.RNA-Seq.chimeric.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.chimeric.gdc_realn.bam 31580263 BAM chimeric harmonized CPTAC3 4c99d89b-f49c-41f2-a00d-94708f9fb78e d2dfe47d944f6e1a6c5714086f195c79 {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.RNA-Seq.genomic.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.genomic.gdc_realn.bam 7234462231 BAM genomic harmonized CPTAC3 dda2a1ca-60cb-4a47-b396-5f46cdc00219 d43399bd681b0f2d09da69be6fa0bcf7 {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02300.RNA-Seq.genomic.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.genomic.gdc_realn.bam 9576947026 BAM genomic harmonized CPTAC3 2ea026e1-eb5b-4872-bf5d-b79463eecb05 54bb1cc024670bfb8e950e88845fd645 {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.RNA-Seq.S30_L008_R1.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R1_001.fastq.gz 4200891062 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 a75baa4b-2aa6-4501-acff-d3a7dc1ac6e4 b561faeb7c608f7f97996108832866de {"aliquot_tag": "ALQ_86a66ab0", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.RNA-Seq.S30_L008_R2.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R2_001.fastq.gz 4472755987 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 ae849cb4-5b50-4e71-bd1f-f70dcb64db77 999f1ee609bbe4789f06d68b56569bbe {"aliquot_tag": "ALQ_86a66ab0", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.RNA-Seq.S4_L007_R1.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3376960138 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 1d3721f9-f99a-4c6e-9811-c1355ff4a7bd 4c758ad01624aa3297aff41df47fe0f6 {"aliquot_tag": "ALQ_6cd92441", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02300.RNA-Seq.S4_L007_R2.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3485988632 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 99d881cd-9d4e-43a1-858c-a61d1ad39045 9857be650f56f97529aaa7d2ad19f355 {"aliquot_tag": "ALQ_6cd92441", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02300.RNA-Seq.transcriptome.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.transcriptome.gdc_realn.bam 9682639614 BAM transcriptome harmonized CPTAC3 165a3b5a-adbb-4b7d-8ed1-747a5a83152e 6806134708ea3d2e7292899a9f52dc38 {"aliquot_tag": "ALQ_6cd92441", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02300.RNA-Seq.transcriptome.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.transcriptome.gdc_realn.bam 11779622461 BAM transcriptome harmonized CPTAC3 970a7fcd-8996-4b4d-b0eb-a923d16879ae bbc049e4b8abb682577adce3b2b5605f {"aliquot_tag": "ALQ_86a66ab0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.WGS.N C3N-02300 LSCC WGS blood_normal CPT0126870002 CPT0126870002.WholeGenome.RP-1303.bam 60773893845 BAM submitted_aligned CPTAC3 95f80826-653b-47a0-8370-9252ad923397 90a887bc999273b4e10c20b88b5a3a97 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02300.WGS.N.hg38 C3N-02300 LSCC WGS blood_normal CPT0126870002 b5a43bd8-256d-49e7-aa24-af3059dbe2a6_wgs_gdc_realn.bam 88657058284 BAM harmonized CPTAC3 156af5ca-43a0-4ed7-a4f0-f43b8fc3a486 e65e2c67db29187e9330bfcccfdbc4d2 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02300.WGS.T C3N-02300 LSCC WGS tumor CPT0126810006 CPT0126810006.WholeGenome.RP-1303.bam 61086507589 BAM submitted_aligned CPTAC3 26b105f7-97ec-49f5-9926-c00620479ad8 98fa5a6ec534da377a24cf1ea234bbdd {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.WGS.T.hg38 C3N-02300 LSCC WGS tumor CPT0126810006 98d7a110-ffda-421d-9fc0-f87a0d921257_wgs_gdc_realn.bam 88136819750 BAM harmonized CPTAC3 248f9ba8-c5ac-42fa-9815-c1d02a6d6ff7 0ea903eee636215a8c85e871e0ef8a15 {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.WXS.N C3N-02300 LSCC WXS blood_normal CPT0126870002 CPT0126870002.WholeExome.RP-1303.bam 23290348244 BAM submitted_aligned CPTAC3 36373eae-0d7c-4a0a-a817-06b581d9ab32 031490cf94ed30e540f7cae0b4a6bd99 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02300.WXS.N.hg38 C3N-02300 LSCC WXS blood_normal CPT0126870002 b5a43bd8-256d-49e7-aa24-af3059dbe2a6_wxs_gdc_realn.bam 32065123921 BAM harmonized CPTAC3 efb4390e-7744-4b34-9606-9d263a6dde14 7f50d620b286894fee53e71107de1d31 {"aliquot_tag": "ALQ_9e344698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02300.WXS.T C3N-02300 LSCC WXS tumor CPT0126810006 CPT0126810006.WholeExome.RP-1303.bam 20804545228 BAM submitted_aligned CPTAC3 b5ea4e09-3594-4e9e-9778-c2d67ccc8e0c 26c75b665ff137611ce9a27b109f6563 {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02300.WXS.T.hg38 C3N-02300 LSCC WXS tumor CPT0126810006 98d7a110-ffda-421d-9fc0-f87a0d921257_wxs_gdc_realn.bam 28482824915 BAM harmonized CPTAC3 ff126e9d-97ea-430d-bce5-60983885212c ab2a9b1f34add4259c5e033b89efe995 {"aliquot_tag": "ALQ_16197721", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02302.MethArray.Green.T C3N-02302 UCEC Methylation_Array tumor CPT0181610006 203561620040_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 f32ece58-bc22-4007-8d8a-65fb55bf1dae dd1af3dd54addccbebe251d8999161bf {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.MethArray.Red.T C3N-02302 UCEC Methylation_Array tumor CPT0181610006 203561620040_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 f7b50295-c9c8-4b5e-b419-5005bd71d33d 6bf1d0eebf8cc469ccc8a0cd14915733 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.miRNA-Seq.S41_L002_R1.T C3N-02302 UCEC miRNA-Seq tumor CPT0181610009 190813_UNC32-K00270_0196_AH5MCWBBXY_CTTGTA_S41_L002_R1_001.unaln.bam 157462933 BAM S41_L002_R1 submitted_unaligned CPTAC3 3da87b62-1cae-460b-b066-f0c90c0498ec 99bc78a34677dbc6599051968fdd1c95 {"aliquot_tag": "ALQ_e8cb2986", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.miRNA-Seq.T.hg38 C3N-02302 UCEC miRNA-Seq tumor CPT0181610009 3db31096-7e50-465e-8b35-65981245d4ba_mirnaseq_gdc_realn.bam 179152113 BAM harmonized CPTAC3 79672171-0d51-435c-b6b2-df79856ce098 cc699929daddb12adcb8ad39b5da65f4 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.chimeric.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.chimeric.gdc_realn.bam 237868688 BAM chimeric harmonized CPTAC3 099532a6-485e-466a-af19-e2266f26a707 bc60f1532d48c47b174398beabbc25e3 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.chimeric.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.chimeric.gdc_realn.bam 128963289 BAM chimeric harmonized CPTAC3 3a407b01-a7be-47d3-bda6-669f989eae8c 7be69ac36cad44153913c6c95a9f3429 {"aliquot_tag": "ALQ_22c1b46e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.genomic.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.genomic.gdc_realn.bam 7306421604 BAM genomic harmonized CPTAC3 7b05d470-c65e-4389-9f90-192d59f5872f ef08293301b081cf3c4144055fbf9262 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.genomic.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.genomic.gdc_realn.bam 8434995849 BAM genomic harmonized CPTAC3 d6527870-bdaf-4e38-af53-107ec6254083 df1f9def973d60f8a38d882428012171 {"aliquot_tag": "ALQ_22c1b46e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.S21_L006_R1.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 2755206862 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 b2c0dc56-6c8a-4a26-b1e9-f3516abe3a8c f5d3b9a9b33878f39480a85eea99e265 {"aliquot_tag": "ALQ_e8cb2986", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.S21_L006_R2.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 2801432321 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 6dc0ca31-8311-4a14-b402-78fc7a24c7c6 7a2f36edaad79c2aff68a28b3c87b117 {"aliquot_tag": "ALQ_e8cb2986", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.S5_R1.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R1_001.fastq.gz 3939772528 FASTQ S5_R1 submitted_unaligned CPTAC3 8f01624d-e213-495a-abd8-1641e8f3d1d2 4e9513ffdd261fbe83db7036d261ddcf {"aliquot_tag": "ALQ_22c1b46e", "sample": "S5", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.S5_R2.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R2_001.fastq.gz 3988555595 FASTQ S5_R2 submitted_unaligned CPTAC3 6c6ae92a-6fbd-44e9-858a-d436eaac94dc 5a36fd32d037427f6f6370f0919f88c9 {"aliquot_tag": "ALQ_22c1b46e", "sample": "S5", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.transcriptome.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.transcriptome.gdc_realn.bam 5350350022 BAM transcriptome harmonized CPTAC3 b568421b-97f7-4a29-8787-4f3b4cefaaee 519ee4f16c9d33b9f379ec844b0ce3c4 {"aliquot_tag": "ALQ_e8cb2986", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.RNA-Seq.transcriptome.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.transcriptome.gdc_realn.bam 3307183187 BAM transcriptome harmonized CPTAC3 a35ec888-511e-4adc-9081-6130532b59a6 e09b36c26acc08f785652ff696657f08 {"aliquot_tag": "ALQ_22c1b46e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.WGS.N C3N-02302 UCEC WGS blood_normal CPT0181660002 CPT0181660002.WholeGenome.RP-1303.bam 76535186399 BAM submitted_aligned CPTAC3 d4c215a5-c635-498d-bb53-0decd657b9ee f40ef772d595e85d5e04f68ef08a4cb6 {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02302.WGS.N.hg38 C3N-02302 UCEC WGS blood_normal CPT0181660002 307efc27-4a1a-4bd5-8705-31e1573bd0fb_wgs_gdc_realn.bam 110881040007 BAM harmonized CPTAC3 ae1586f1-701a-4540-9728-5c2f0ab51d19 31535f0a004eb565de8837f561bfa5df {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02302.WGS.T C3N-02302 UCEC WGS tumor CPT0181610006 CPT0181610006.WholeGenome.RP-1303.bam 68924090536 BAM submitted_aligned CPTAC3 1ea2e473-2b8a-448b-a977-748b5c9e63f8 c638afb8770dbe2d8a69738801e15535 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.WGS.T.hg38 C3N-02302 UCEC WGS tumor CPT0181610006 98562991-cf38-4173-90dd-518f188a593c_wgs_gdc_realn.bam 101473581985 BAM harmonized CPTAC3 0b38e3a6-32a4-42ef-b121-e7bca823c7fd ae9df4a094d9562ce438ef89df4471c7 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.WXS.N C3N-02302 UCEC WXS blood_normal CPT0181660002 CPT0181660002.WholeExome.RP-1303.bam 25523250379 BAM submitted_aligned CPTAC3 b067f5a3-0279-49cd-b54d-3c9e77f81195 332eefa75cfbcf3c62856d7b96ca9fbe {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02302.WXS.N.hg38 C3N-02302 UCEC WXS blood_normal CPT0181660002 307efc27-4a1a-4bd5-8705-31e1573bd0fb_wxs_gdc_realn.bam 35013630318 BAM harmonized CPTAC3 fd647e79-8bf9-4737-a55b-a0fb81c19af3 7c0aa4d84030551261e7905908f34674 {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02302.WXS.T C3N-02302 UCEC WXS tumor CPT0181610006 CPT0181610006.WholeExome.RP-1303.bam 30335238761 BAM submitted_aligned CPTAC3 b99e9f73-9aff-4668-9181-57552b31c1d5 a20cb11ad7c098959699005aba2a3e48 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02302.WXS.T.hg38 C3N-02302 UCEC WXS tumor CPT0181610006 98562991-cf38-4173-90dd-518f188a593c_wxs_gdc_realn.bam 41216687611 BAM harmonized CPTAC3 62490e1e-a3cf-4ab2-950a-feb37dca2428 d0fe6d15f72b5f1145a8ee172ce2ab99 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02332.MethArray.Green.A C3N-02332 CCRCC Methylation_Array tissue_normal CPT0135770006 204930640023_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 8683a2cb-5458-4355-b3a6-9541822cd013 afd757abd708c0c757c23275f33ae2bc {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.MethArray.Green.T C3N-02332 CCRCC Methylation_Array tumor CPT0135740009 203219650165_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b382c73b-0730-487f-a4a4-a7fa3408b500 3f15bad7889a38997304e00c96e8d0cc {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.MethArray.Red.A C3N-02332 CCRCC Methylation_Array tissue_normal CPT0135770006 204930640023_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 8d6cab79-1f79-4ed1-9a0f-f67903b32276 a0ec64a3c9b9f342090020f598bf74ca {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.MethArray.Red.T C3N-02332 CCRCC Methylation_Array tumor CPT0135740009 203219650165_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 a26af2c1-f2f7-4c82-9cc4-6853f1f87158 2598b54ea1aed698817faa6697eef059 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.miRNA-Seq.A.hg38 C3N-02332 CCRCC miRNA-Seq tissue_normal CPT0135770009 ba80e56d-05f9-44e9-a5d2-c35ffcbfe2de_mirnaseq_gdc_realn.bam 181680958 BAM harmonized CPTAC3 93cab33c-ce00-4c84-90cb-b27fc13a7186 3ac5271f7dea9cbde82c18e91ac56f5c {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.miRNA-Seq.S30_L003_R1.A C3N-02332 CCRCC miRNA-Seq tissue_normal CPT0135770009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L003_R1_001.unaln.bam 164887972 BAM S30_L003_R1 submitted_unaligned CPTAC3 792b596d-fdf1-4664-8fa0-53022b3777ad 121d35f8fcc38c78886dd06b6566789a {"aliquot_tag": "ALQ_5f237c6", "sample": "S30", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.miRNA-Seq.S45_L005_R1.T C3N-02332 CCRCC miRNA-Seq tumor CPT0135740006 190108_UNC31-K00269_0176_AHYGLVBBXX_TCATTC_S45_L005_R1_001.unaln.bam 216096092 BAM S45_L005_R1 submitted_unaligned CPTAC3 7054bbd1-02f7-4dab-aad7-49366f0a605a 6baf415763f226a8a91be9508293f369 {"aliquot_tag": "ALQ_d2ed5087", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.miRNA-Seq.T.hg38 C3N-02332 CCRCC miRNA-Seq tumor CPT0135740006 b1081533-54c5-4177-abf7-c96e8b4c93af_mirnaseq_gdc_realn.bam 236910776 BAM harmonized CPTAC3 adf38a00-79ff-446b-bc37-e2acbcf583ec 5f0da4da55c4ef277415acad8c6dde3a {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.RNA-Seq.chimeric.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.chimeric.gdc_realn.bam 90361985 BAM chimeric harmonized CPTAC3 6d03d99e-ff65-4f73-84e8-b6dfbc412ad9 14ad183cb8884fb9a7aec5ab7ccb2c58 {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.RNA-Seq.chimeric.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.chimeric.gdc_realn.bam 34273899 BAM chimeric harmonized CPTAC3 0df64661-ad88-406c-8bff-483e608b65f6 3d77c813255c77df73d89f801da37e2c {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.RNA-Seq.genomic.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.genomic.gdc_realn.bam 8397339625 BAM genomic harmonized CPTAC3 7bcffd43-8eba-4f79-9b33-112d2b4f8b29 951aa8679e85f53109601c46ddca382c {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.RNA-Seq.genomic.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.genomic.gdc_realn.bam 7770870244 BAM genomic harmonized CPTAC3 351ca12c-cfbc-4035-b219-3c7f4cb5ba42 74a9f9e643f15c126d7d92b9cdf8465b {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.RNA-Seq.S12_L005_R1.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R1_001.fastq.gz 3819899797 FASTQ S12_L005_R1 submitted_unaligned CPTAC3 9f68e3f0-fd45-42b2-97ae-3e321ac596b9 47f9a9c4c71060a236d27e2cd58047a3 {"aliquot_tag": "ALQ_5f237c6", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.RNA-Seq.S12_L005_R2.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R2_001.fastq.gz 4015907335 FASTQ S12_L005_R2 submitted_unaligned CPTAC3 1f58a2d8-4839-4469-8f08-6d4b0f06e25d 58db1a78f544b07e93869a31c452adab {"aliquot_tag": "ALQ_5f237c6", "sample": "S12", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.RNA-Seq.S76_L008_R1.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R1_001.fastq.gz 3679221495 FASTQ S76_L008_R1 submitted_unaligned CPTAC3 16540bbd-fce7-4f83-8dc3-66a7e65c5d8d 1ae8272122c29bc9062678875165b265 {"aliquot_tag": "ALQ_d2ed5087", "sample": "S76", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.RNA-Seq.S76_L008_R2.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R2_001.fastq.gz 3943506793 FASTQ S76_L008_R2 submitted_unaligned CPTAC3 84d8e419-8b42-4f1e-9e2b-2c899ee9591a 865a7470888f314aece40dcab222f6a5 {"aliquot_tag": "ALQ_d2ed5087", "sample": "S76", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.RNA-Seq.transcriptome.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.transcriptome.gdc_realn.bam 9740722662 BAM transcriptome harmonized CPTAC3 02fb3a9a-e3cc-4289-abd7-d8f42bf63b31 1c028052b231c7444f9c732b0991d92b {"aliquot_tag": "ALQ_5f237c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.RNA-Seq.transcriptome.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.transcriptome.gdc_realn.bam 9817022410 BAM transcriptome harmonized CPTAC3 d854a6ed-9ada-41c4-a2e9-e6dda8dc7a7e cf2e30fe3f74cf61190910893cd168fa {"aliquot_tag": "ALQ_d2ed5087", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.WGS.N C3N-02332 CCRCC WGS blood_normal CPT0135860002 CPT0135860002.WholeGenome.RP-1303.bam 53106306070 BAM submitted_aligned CPTAC3 a9354ce8-f0aa-4006-b43d-1043b3996d1d 7a529e8d5876e0c849c68bd3139c11da {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02332.WGS.N.hg38 C3N-02332 CCRCC WGS blood_normal CPT0135860002 225b554b-e33a-463e-a6d8-699f7692b126_wgs_gdc_realn.bam 76482193491 BAM harmonized CPTAC3 93e5a295-e6c0-4a31-9c06-258d370e953f d72956281afe31394d1dcf3fb86a97b9 {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02332.WGS.T C3N-02332 CCRCC WGS tumor CPT0135740009 CPT0135740009.WholeGenome.RP-1303.bam 49163161167 BAM submitted_aligned CPTAC3 927ad429-710b-4bb9-bb15-edd653287a74 96b0587150f19fa3f31c4e11c3cce6bc {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.WGS.T.hg38 C3N-02332 CCRCC WGS tumor CPT0135740009 04092f66-6cc3-4ef8-8c43-0fa96c464b13_wgs_gdc_realn.bam 72183201314 BAM harmonized CPTAC3 eaa3068c-8688-43ba-98d9-38a890af74a2 6492251792dccba36a01a50ce0caee39 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.WXS.A C3N-02332 CCRCC WXS tissue_normal CPT0135770006 CPT0135770006.WholeExome.RP-1303.bam 37275598702 BAM submitted_aligned CPTAC3 5377bfcd-b4c5-4486-920e-a0245a6cb10d e10e5c8ff896e26c0209e534e8b435fa {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.WXS.A.hg38 C3N-02332 CCRCC WXS tissue_normal CPT0135770006 f45faed8-fbba-4e20-9207-9f19473ad439_wxs_gdc_realn.bam 51835056278 BAM harmonized CPTAC3 a5d47d63-ef13-41cf-8bc6-039385ee18f6 6639924a6ccb23c6d7968b8d6cf5303b {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02332.WXS.N C3N-02332 CCRCC WXS blood_normal CPT0135860002 CPT0135860002.WholeExome.RP-1303.bam 22045172777 BAM submitted_aligned CPTAC3 8c9b141c-36d7-43a7-9a1e-0dbfbd5bb89a c3420254267d1c426a6ba470215a7978 {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02332.WXS.N.hg38 C3N-02332 CCRCC WXS blood_normal CPT0135860002 225b554b-e33a-463e-a6d8-699f7692b126_wxs_gdc_realn.bam 30056429242 BAM harmonized CPTAC3 5aaf2040-0346-46f6-b2ce-58c6e2aab25d 5885ad2469789f7c67610357ba0c5856 {"aliquot_tag": "ALQ_5e16752b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02332.WXS.T C3N-02332 CCRCC WXS tumor CPT0135740009 CPT0135740009.WholeExome.RP-1303.bam 26344860245 BAM submitted_aligned CPTAC3 c45dd4a9-bbf3-4e71-8157-c0a05c6a113b 6338959d379de4c5b9c72e49cee82ac2 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02332.WXS.T.hg38 C3N-02332 CCRCC WXS tumor CPT0135740009 04092f66-6cc3-4ef8-8c43-0fa96c464b13_wxs_gdc_realn.bam 35509313196 BAM harmonized CPTAC3 5b605b6a-ab9a-46ab-8a2e-ee304855f678 0bbfa5b70bb4a1b32d16c04b0499b815 {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.MethArray.Green.A C3N-02333 HNSCC Methylation_Array tissue_normal CPT0176790006 203220070084_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 19dd72df-583f-4905-a884-7c5a7a7cad87 dc9b9068b7834f36c47c5f820a9ec04a {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.MethArray.Green.T C3N-02333 HNSCC Methylation_Array tumor CPT0176770006 203273200155_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ecc582d2-fcf0-40b6-8556-bb6651a1662c aa265c8efbb3e3815a7935a95fbe23ab {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.MethArray.Red.A C3N-02333 HNSCC Methylation_Array tissue_normal CPT0176790006 203220070084_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 3f4efdbe-cbbd-4c26-a64e-2f153990da04 9ac4f5eafdb65b853884c9960fdf54d7 {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.MethArray.Red.T C3N-02333 HNSCC Methylation_Array tumor CPT0176770006 203273200155_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 e5f52819-b925-421f-bbc1-6efac2e35318 310c02fac799795adbcbce112a75af5c {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.miRNA-Seq.A.hg38 C3N-02333 HNSCC miRNA-Seq tissue_normal CPT0176790009 5006fcf4-feed-44ea-af33-5aa5911c2aaf_mirnaseq_gdc_realn.bam 321160062 BAM harmonized CPTAC3 c5ecf971-204a-4674-a6f4-ec6a5b857442 fedd8caadc5f6433ee92f3847f36fa21 {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.miRNA-Seq.S39_L002_R1.T C3N-02333 HNSCC miRNA-Seq tumor CPT0176770009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTATAC_S39_L002_R1_001.unaln.bam 227376898 BAM S39_L002_R1 submitted_unaligned CPTAC3 b6fad7df-9bb5-4e21-ad27-c84ed6576386 1326c529e766009d7ccbf1421d9d3d42 {"aliquot_tag": "ALQ_b05023a1", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.miRNA-Seq.S44_L002_R1.A C3N-02333 HNSCC miRNA-Seq tissue_normal CPT0176790009 190228_UNC32-K00270_0151_AHYLY3BBXX_TATAAT_S44_L002_R1_001.unaln.bam 287960326 BAM S44_L002_R1 submitted_unaligned CPTAC3 69f904e0-1e26-4642-b28b-8b3aacd0c473 f1280585e7cd772e90520dd2f6defcc8 {"aliquot_tag": "ALQ_f609dc0", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.miRNA-Seq.T.hg38 C3N-02333 HNSCC miRNA-Seq tumor CPT0176770009 cf1391e9-db3f-45a3-8f76-73a2c2da72b7_mirnaseq_gdc_realn.bam 255778824 BAM harmonized CPTAC3 f37f0812-ad06-41aa-b071-68fab7be4641 107044c29253488193a05983c2d6eae5 {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.chimeric.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.chimeric.gdc_realn.bam 102767581 BAM chimeric harmonized CPTAC3 11ea64d7-7d34-4d4b-96c0-e98089e8962f 91bec6a90a5ffc553794e569340bbeaf {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.chimeric.gdc_realn.bam 140879390 BAM chimeric harmonized CPTAC3 8b0c7aa1-6812-4fbc-ad06-ca335bfae314 70cb840b03bd7bfee8f46431ec1f2e1a {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.chimeric.gdc_realn.bam 39193800 BAM chimeric harmonized CPTAC3 e8b0c58d-bf6b-42c3-80d7-d7f16b1f2930 03f6e271bb0749259e8c14a7e75851f6 {"aliquot_tag": "ALQ_d496bfd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.chimeric.gdc_realn.bam 326425162 BAM chimeric harmonized CPTAC3 578c099e-cff1-4032-8986-d52e2268305f 17d43e46fa0bc67a360e54de84301cbd {"aliquot_tag": "ALQ_3a98defa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.genomic.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.genomic.gdc_realn.bam 11777210692 BAM genomic harmonized CPTAC3 e095e00a-69d0-439c-a001-3c96eb87c0d3 3d958f58f52ad8a32545892a6ff4ebe0 {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.genomic.gdc_realn.bam 6644124768 BAM genomic harmonized CPTAC3 7597ce88-0d07-4537-b7f8-b9b1ec89c886 efb6461111b687314588d3d51b6e0bca {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.genomic.gdc_realn.bam 7236103080 BAM genomic harmonized CPTAC3 ffa8cad3-712f-42b0-b319-151538a00a4a 36c9caa0f50b57c4301079724285d2ab {"aliquot_tag": "ALQ_d496bfd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.genomic.gdc_realn.bam 15089170055 BAM genomic harmonized CPTAC3 41303f6a-4940-4541-905f-c93f0fef4336 fdf8999dcc476ace7c462731a36069b9 {"aliquot_tag": "ALQ_3a98defa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.S12_R1.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R1_001.fastq.gz 8777483586 FASTQ S12_R1 submitted_unaligned CPTAC3 5e113935-285d-4294-ad03-07a5bd40dc5c 59a4a2a3439eedcc4bcd66a108e44174 {"aliquot_tag": "ALQ_3a98defa", "sample": "S12", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.S12_R2.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R2_001.fastq.gz 9235596641 FASTQ S12_R2 submitted_unaligned CPTAC3 84efb119-d52a-4119-acca-4f55fd149f23 5eb40a282d9a04ad87db1f6096b95769 {"aliquot_tag": "ALQ_3a98defa", "sample": "S12", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.S17_R1.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R1_001.fastq.gz 3469816618 FASTQ S17_R1 submitted_unaligned CPTAC3 89feabec-3dac-4706-b306-46630d0e875c c99feb497486e5eada3226c18c8bb7ef {"aliquot_tag": "ALQ_d496bfd6", "sample": "S17", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.S17_R2.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R2_001.fastq.gz 3892229327 FASTQ S17_R2 submitted_unaligned CPTAC3 e47fc112-fb5c-44f7-8d3f-5e2294e19e2f b0b12ff9d6fb650398ee8ac5a0686001 {"aliquot_tag": "ALQ_d496bfd6", "sample": "S17", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.S23_L005_R1.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R1_001.fastq.gz 5243902991 FASTQ S23_L005_R1 submitted_unaligned CPTAC3 ad623de6-4bb8-4f72-b04f-e7f94da8d988 3086688f01a040f68b976432547533ec {"aliquot_tag": "ALQ_f609dc0", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.RNA-Seq.S23_L005_R2.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R2_001.fastq.gz 5971542451 FASTQ S23_L005_R2 submitted_unaligned CPTAC3 955ba682-5d4e-4d77-9609-41b8952797c1 16f05ae94f970927d65ea1f8106b1909 {"aliquot_tag": "ALQ_f609dc0", "sample": "S23", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.RNA-Seq.S5_L006_R1.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R1_001.fastq.gz 3144995123 FASTQ S5_L006_R1 submitted_unaligned CPTAC3 72892728-c7f4-42f1-8fe3-06f5fc6421df 705934d244245ad5f6954d6ea5dfb338 {"aliquot_tag": "ALQ_b05023a1", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.S5_L006_R2.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R2_001.fastq.gz 3342191721 FASTQ S5_L006_R2 submitted_unaligned CPTAC3 22f98aed-8f9d-4011-bbe4-2915a522dee4 f5584c9d4d15b614eb0f89feb73f8d46 {"aliquot_tag": "ALQ_b05023a1", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.transcriptome.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.transcriptome.gdc_realn.bam 17329756012 BAM transcriptome harmonized CPTAC3 244f500d-caf2-4a55-bb33-9a96527cb07a 6dc97ed17cb62941f6ae2a65bc3b7b0b {"aliquot_tag": "ALQ_f609dc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.transcriptome.gdc_realn.bam 8210592953 BAM transcriptome harmonized CPTAC3 99976435-5846-4dba-82b7-34e82db57282 0012c721d94c375047f66be3cb45cbe7 {"aliquot_tag": "ALQ_b05023a1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.transcriptome.gdc_realn.bam 4410523443 BAM transcriptome harmonized CPTAC3 e27e6ec6-66c0-4b1b-8c56-27a44805b3f7 55aab5b5a176061b0b8cc1d2776ce97a {"aliquot_tag": "ALQ_d496bfd6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.transcriptome.gdc_realn.bam 8807366883 BAM transcriptome harmonized CPTAC3 25542630-ce49-4eb2-af1a-1756804b9d67 cd6ba8852aee88979979b67daa1625b2 {"aliquot_tag": "ALQ_3a98defa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.WGS.N C3N-02333 HNSCC WGS blood_normal CPT0176950002 CPT0176950002.WholeGenome.RP-1303.bam 69498639317 BAM submitted_aligned CPTAC3 53175b55-11f0-449c-84a3-3c75cdee3958 e6cbaf926e6695b69332eb700864a563 {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02333.WGS.N.hg38 C3N-02333 HNSCC WGS blood_normal CPT0176950002 3d3f0c39-ea2c-4909-9119-ebb58f071a66_wgs_gdc_realn.bam 101144654719 BAM harmonized CPTAC3 e55f1c27-beb4-4ef6-80f3-dbf092956a5a d4cb10a7a570c3f8d591a34b077b6e6d {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02333.WGS.T C3N-02333 HNSCC WGS tumor CPT0176770006 CPT0176770006.WholeGenome.RP-1303.bam 60643187335 BAM submitted_aligned CPTAC3 8eeb95d1-ebc9-417f-8ae5-789cf6eba881 11c0f06b520edf4c1d3fa0848ac45e8e {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.WGS.T.hg38 C3N-02333 HNSCC WGS tumor CPT0176770006 e319056e-8929-40c5-b74c-744c257ea260_wgs_gdc_realn.bam 88415779246 BAM harmonized CPTAC3 6d000ada-1862-45d9-9496-21229d6f10ad f25447fff868126f186944022d9f0483 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.WXS.A C3N-02333 HNSCC WXS tissue_normal CPT0176790006 CPT0176790006.WholeExome.RP-1303.bam 20353333508 BAM submitted_aligned CPTAC3 ac63a16b-21c1-4e42-ac6f-bafb5d16edd6 18c89256e27c3fcf23ab36c0b26a1ac9 {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.WXS.A.hg38 C3N-02333 HNSCC WXS tissue_normal CPT0176790006 75e3859e-7772-42d8-8c22-00e35bc4d843_wxs_gdc_realn.bam 28294895087 BAM harmonized CPTAC3 12c131e9-9fd7-4ab2-af33-48d2c05b52c4 2dbdaa760fb224b0ddc72b8af3d294b1 {"aliquot_tag": "ALQ_9fdf8051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02333.WXS.N C3N-02333 HNSCC WXS blood_normal CPT0176950002 CPT0176950002.WholeExome.RP-1303.bam 21178450087 BAM submitted_aligned CPTAC3 88c975be-8a66-4022-a5d9-ec53594b1db3 54ff4697642cfb95d2f837fada34ec7e {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02333.WXS.N.hg38 C3N-02333 HNSCC WXS blood_normal CPT0176950002 3d3f0c39-ea2c-4909-9119-ebb58f071a66_wxs_gdc_realn.bam 28521597659 BAM harmonized CPTAC3 b27bdd4f-652e-4c26-9c10-92a9e51cedb9 fe29b1d82fb204b4961edcacff4616fc {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02333.WXS.T C3N-02333 HNSCC WXS tumor CPT0176770006 CPT0176770006.WholeExome.RP-1303.bam 18192271782 BAM submitted_aligned CPTAC3 a86dff36-1d9b-4fe0-a07e-da55f7064b7d 4437e8eae23bc19371662a004676aee6 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02333.WXS.T.hg38 C3N-02333 HNSCC WXS tumor CPT0176770006 e319056e-8929-40c5-b74c-744c257ea260_wxs_gdc_realn.bam 25718151290 BAM harmonized CPTAC3 3671fdbb-5149-4803-b53d-2ae48e4c31a8 7926bca3f1d5c150a59f9f30bf111c35 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02337.MethArray.Green.T C3N-02337 UCEC Methylation_Array tumor CPT0136280006 203561620043_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d07f723e-c79d-407a-baa6-44d99b672090 4903e1d30390e9d4f21f986d30024372 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.MethArray.Red.T C3N-02337 UCEC Methylation_Array tumor CPT0136280006 203561620043_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 ef4bfbd6-9245-4616-845d-a2bf4a1bda0e 6c9f95502de0952023869dd3ffb02975 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.miRNA-Seq.S33_L002_R1.T C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L002_R1_001.unaln.bam 288135954 BAM S33_L002_R1 submitted_unaligned CPTAC3 fded1b9b-b12e-41ff-8a2f-598a443d5692 047ebd1a2429f0cf1a3706a5ec64d858 {"aliquot_tag": "ALQ_e6872b39", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.miRNA-Seq.T.hg38 C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 d8d3cb65-05ab-42f7-bb37-247d39e36b46_mirnaseq_gdc_realn.bam 317575556 BAM harmonized CPTAC3 d0aa8602-d359-4302-a7fd-d94b89e3814f 2fbe35a4796246ca95342fe747f81124 {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.chimeric.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.chimeric.gdc_realn.bam 53132625 BAM chimeric harmonized CPTAC3 516c7930-a3b2-44b8-a24d-4070bc4a8fe3 8b63d0aa04f9d8c94638938154ca670c {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.chimeric.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.chimeric.gdc_realn.bam 225088005 BAM chimeric harmonized CPTAC3 24451364-d28d-453c-ad82-64c8a09efae9 25d832ebd85139cdd3470aa053c4b48f {"aliquot_tag": "ALQ_69b0680f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.genomic.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.genomic.gdc_realn.bam 8730445667 BAM genomic harmonized CPTAC3 48c6f2a4-43d7-4554-b7d3-e4601cf86175 afc13f07909e3e484a3ebf414ec82e11 {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.genomic.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.genomic.gdc_realn.bam 9936473736 BAM genomic harmonized CPTAC3 6d3af1d2-b810-4a18-8a49-d2ad5cda5012 99e76046f25d1afe7271d29243777e4f {"aliquot_tag": "ALQ_69b0680f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.S6_L002_R1.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R1_001.fastq.gz 4476475233 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 935a992e-d60f-4c7e-9375-a7ebef77d4fd 5d6301f2bb690c07b63327b39866fa1c {"aliquot_tag": "ALQ_e6872b39", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.S6_L002_R2.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R2_001.fastq.gz 4656672771 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 79a8ed7b-22ad-4bc6-bf48-ff8b25e8e214 84c221f686bafc609d5f30266833dd81 {"aliquot_tag": "ALQ_e6872b39", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.S88_R1.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R1_001.fastq.gz 5863422600 FASTQ S88_R1 submitted_unaligned CPTAC3 d76700f4-6e98-4388-adfe-130a7ce7458a b88e205225c0313fb711a58dedbdb73a {"aliquot_tag": "ALQ_69b0680f", "sample": "S88", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.S88_R2.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R2_001.fastq.gz 6108208077 FASTQ S88_R2 submitted_unaligned CPTAC3 0fdeb0b4-185d-43e9-a228-3cc881bf9967 7642bd0e2fa6460124deadca219d0cb3 {"aliquot_tag": "ALQ_69b0680f", "sample": "S88", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.transcriptome.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.transcriptome.gdc_realn.bam 7736180459 BAM transcriptome harmonized CPTAC3 903be311-5851-4588-947b-4eb071d45a88 3374e2066c77e7335563e37fe3974c5c {"aliquot_tag": "ALQ_e6872b39", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.RNA-Seq.transcriptome.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.transcriptome.gdc_realn.bam 4531382449 BAM transcriptome harmonized CPTAC3 3ce8dfb8-7bea-4c37-81f6-630c42ba4021 90a8cf7d808aed38b051ff07225579d2 {"aliquot_tag": "ALQ_69b0680f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.WGS.N C3N-02337 UCEC WGS blood_normal CPT0136390002 CPT0136390002.WholeGenome.RP-1303.bam 75885781858 BAM submitted_aligned CPTAC3 775129b4-c389-4718-a899-0aa07f12cd3f 679115b5ce0c315d835a235ab9d953c3 {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02337.WGS.N.hg38 C3N-02337 UCEC WGS blood_normal CPT0136390002 a9d85cf4-a820-49ff-8663-0d9279768a5f_wgs_gdc_realn.bam 111122777328 BAM harmonized CPTAC3 4f9d686b-75ee-4d95-9cb4-8adf3904769e 8ef2f70feeb73ccda53d4473393944d7 {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02337.WGS.T C3N-02337 UCEC WGS tumor CPT0136280006 CPT0136280006.WholeGenome.RP-1303.bam 60970978852 BAM submitted_aligned CPTAC3 ab5f89f0-3fd2-4f19-a3ac-98e1d6dbcef9 af40ec1fa73e4c0e4b86e6c4d550c64c {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.WGS.T.hg38 C3N-02337 UCEC WGS tumor CPT0136280006 f262d2e0-15d6-4d36-8df9-9932021a8268_wgs_gdc_realn.bam 88353967037 BAM harmonized CPTAC3 818bda3f-0514-4b8d-8805-ed25754e3eb8 7f5906dcb7e84efa57c16d0caf2c37c0 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.WXS.N C3N-02337 UCEC WXS blood_normal CPT0136390002 CPT0136390002.WholeExome.RP-1303.bam 25282376871 BAM submitted_aligned CPTAC3 b30a5f18-2539-4f5e-9fda-998405bf6c56 6f3f2ec10c9f90ce54dc3fd254545e45 {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02337.WXS.N.hg38 C3N-02337 UCEC WXS blood_normal CPT0136390002 a9d85cf4-a820-49ff-8663-0d9279768a5f_wxs_gdc_realn.bam 34810264033 BAM harmonized CPTAC3 77c8ecfb-5ca4-4fcf-af4b-d1afa1269926 09a4ad8ac0b211052ec526a0b34ef0fc {"aliquot_tag": "ALQ_876908a4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02337.WXS.T C3N-02337 UCEC WXS tumor CPT0136280006 CPT0136280006.WholeExome.RP-1303.bam 26029040170 BAM submitted_aligned CPTAC3 afa7b0bd-9374-4a21-824b-3cfe017f0c80 ecda9d2b1f0a4dffb4ddba1f98259779 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02337.WXS.T.hg38 C3N-02337 UCEC WXS tumor CPT0136280006 f262d2e0-15d6-4d36-8df9-9932021a8268_wxs_gdc_realn.bam 35725807545 BAM harmonized CPTAC3 d8d16c0b-bfdd-422b-879a-9fd3e403f07b 9d151f2651d1983939fb7367538bc2a7 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02338.MethArray.Green.T C3N-02338 CCRCC Methylation_Array tumor CPT0136460009 203219670117_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ca784c77-cccc-4836-9f04-94f312e02509 114c48f1ce6fe8b1a4025d7061645832 {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.MethArray.Red.T C3N-02338 CCRCC Methylation_Array tumor CPT0136460009 203219670117_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 cd660857-8398-441c-bcc5-455ddeecaead 1b6618a3696d94f742d5dbeae18c4efe {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.miRNA-Seq.S37_L005_R1.T C3N-02338 CCRCC miRNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0176_AHYGLVBBXX_CGGAAT_S37_L005_R1_001.unaln.bam 222914173 BAM S37_L005_R1 submitted_unaligned CPTAC3 3ab32028-a93c-4cd9-bef0-3fba2671e2be 9a12c3d76eea0c17db7443741d1f8e55 {"aliquot_tag": "ALQ_1f516bd4", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.miRNA-Seq.T.hg38 C3N-02338 CCRCC miRNA-Seq tumor CPT0136460006 46b8c0aa-e140-4ff9-a6df-e9922f511aab_mirnaseq_gdc_realn.bam 239500396 BAM harmonized CPTAC3 538373ec-fb31-4776-9a5e-31e50e5f9902 91b097e5310b9d8c3e19731352f588f3 {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.RNA-Seq.chimeric.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.chimeric.gdc_realn.bam 28372164 BAM chimeric harmonized CPTAC3 ab65e951-39e7-47a4-b11e-110e036035fb 8bb67955ade19f6d0cb6e0fc9560b669 {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.RNA-Seq.genomic.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.genomic.gdc_realn.bam 7719111931 BAM genomic harmonized CPTAC3 8ba8cad6-81b3-4dc4-a80b-4c0047a6e358 d883ac04f29205f4fcb0de340ccbec36 {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.RNA-Seq.S19_L005_R1.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R1_001.fastq.gz 3666899684 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 c1f53a89-c62f-4439-ac6c-2e44984b1967 3e75ca9d036e2c338369ffc7a0d23de0 {"aliquot_tag": "ALQ_1f516bd4", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.RNA-Seq.S19_L005_R2.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R2_001.fastq.gz 3754242208 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 c6b8067a-67ef-42fb-ab92-7c368e2c8d6e 67fac81e4261f4b05b5c30bf55d54e76 {"aliquot_tag": "ALQ_1f516bd4", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.RNA-Seq.transcriptome.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.transcriptome.gdc_realn.bam 10402922388 BAM transcriptome harmonized CPTAC3 ffdd694b-5db3-4f71-80d2-e6cc4a2b6b3b c35b465c86e73fddbe7db30563f1651a {"aliquot_tag": "ALQ_1f516bd4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.WGS.N C3N-02338 CCRCC WGS blood_normal CPT0136570002 CPT0136570002.WholeGenome.RP-1303.bam 79900866056 BAM submitted_aligned CPTAC3 12204de5-f10d-4431-856d-1ce4ab1d8ee3 b00ca4b359a9c33545c4542cd6267642 {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02338.WGS.N.hg38 C3N-02338 CCRCC WGS blood_normal CPT0136570002 da606039-6f4f-4d22-bb19-994cd41fddcd_wgs_gdc_realn.bam 118338303050 BAM harmonized CPTAC3 3d858ed2-3ad5-4890-b31e-51250b345ed3 7cf1f30ad17cf1dd91792e42a8a3b81c {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02338.WGS.T C3N-02338 CCRCC WGS tumor CPT0136460009 CPT0136460009.WholeGenome.RP-1303.bam 104553360085 BAM submitted_aligned CPTAC3 2fb14ff9-2978-4d24-8a9e-a9a41baf06bd 6213c84f012675b5a67debf3eafc7b6e {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.WGS.T.hg38 C3N-02338 CCRCC WGS tumor CPT0136460009 25efed2a-bca1-4367-803f-e800d2e509d6_wgs_gdc_realn.bam 150768515099 BAM harmonized CPTAC3 ea049fdf-f6ea-4ba2-8fb3-977bba4428a4 1f0681a555e62a861192432a7ea885f1 {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.WXS.N C3N-02338 CCRCC WXS blood_normal CPT0136570002 CPT0136570002.WholeExome.RP-1303.bam 21664655933 BAM submitted_aligned CPTAC3 505bfa8c-23a1-4d80-be0c-621e666099dd 70f0cb2f3d04d3b9d412e12522e4e3f2 {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02338.WXS.N.hg38 C3N-02338 CCRCC WXS blood_normal CPT0136570002 da606039-6f4f-4d22-bb19-994cd41fddcd_wxs_gdc_realn.bam 29844629658 BAM harmonized CPTAC3 e7aff9ae-bdba-4ab6-85c0-487b9a3e1624 3fbb7416f5ad53936f0c627ca17b1726 {"aliquot_tag": "ALQ_ee0055d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02338.WXS.T C3N-02338 CCRCC WXS tumor CPT0136460009 CPT0136460009.WholeExome.RP-1303.bam 28212029025 BAM submitted_aligned CPTAC3 1bd2ca71-063a-4b32-bda0-67f5a7fb42d3 da4b183a35399d1095864f66dc7bbd2e {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02338.WXS.T.hg38 C3N-02338 CCRCC WXS tumor CPT0136460009 25efed2a-bca1-4367-803f-e800d2e509d6_wxs_gdc_realn.bam 38471246659 BAM harmonized CPTAC3 1885f3a5-715f-4d75-8017-a9936297df04 30b4a127be0bb9dbea3750c06cc1405d {"aliquot_tag": "ALQ_8fee7645", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.MethArray.Green.A C3N-02339 LSCC Methylation_Array tissue_normal CPT0136660006 203219670118_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 65f570f0-a3b7-47f6-be8b-0209e42d00b2 4a25e660b954b10a397b5e3fcd032fca {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.MethArray.Green.T C3N-02339 LSCC Methylation_Array tumor CPT0136640009 203219650042_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d261e7b7-9b94-4f0d-8319-1bcd8502a001 fb378066d9be1c3a0c582ff4fe5cf5e8 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.MethArray.Red.A C3N-02339 LSCC Methylation_Array tissue_normal CPT0136660006 203219670118_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 d9d407aa-71cb-4cc8-9430-c14ff59b3e6c 6d0f1353a7d9751ca05d3fb06b3cba4e {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.MethArray.Red.T C3N-02339 LSCC Methylation_Array tumor CPT0136640009 203219650042_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 3b6c9df3-1e9f-476e-9da6-78f4012f9ff0 bd849ede3e2f3ff7c83ce4b078e940a6 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.miRNA-Seq.A.hg38 C3N-02339 LSCC miRNA-Seq tissue_normal CPT0136660009 b83b430f-76fd-428d-90ea-470913f28f1d_mirnaseq_gdc_realn.bam 285849570 BAM harmonized CPTAC3 e7ce6a4f-fb2a-4a29-85eb-afb475140939 2c09964f6af690c99432f53df5653b94 {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.miRNA-Seq.S24_L002_R1.T C3N-02339 LSCC miRNA-Seq tumor CPT0136640013 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTGAT_S24_L002_R1_001.unaln.bam 237399533 BAM S24_L002_R1 submitted_unaligned CPTAC3 b2da884d-07c8-4662-ba79-65d266ca6cf2 8172364480a116d41f3147a3a08125ac {"aliquot_tag": "ALQ_41285c71", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.miRNA-Seq.S44_L002_R1.A C3N-02339 LSCC miRNA-Seq tissue_normal CPT0136660009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCATTC_S44_L002_R1_001.unaln.bam 260412349 BAM S44_L002_R1 submitted_unaligned CPTAC3 36d5457c-9dcb-4475-972b-f8422725dcc7 dc8db872941c66d62042361f85ba8469 {"aliquot_tag": "ALQ_c226d74e", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.miRNA-Seq.T.hg38 C3N-02339 LSCC miRNA-Seq tumor CPT0136640013 fc159fd8-d225-45bb-81d4-323e75e77156_mirnaseq_gdc_realn.bam 255836389 BAM harmonized CPTAC3 fef2cc8a-8359-4452-958c-671717a38787 6328420f0c12564bc88bc7ef2e927545 {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.RNA-Seq.chimeric.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.chimeric.gdc_realn.bam 30363160 BAM chimeric harmonized CPTAC3 df23cbb5-0e8f-4990-b1d0-4ac71c4f67df ed936d801665197acd68e8dd3524e4f8 {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.RNA-Seq.chimeric.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.chimeric.gdc_realn.bam 20302205 BAM chimeric harmonized CPTAC3 e30e3725-ed78-4143-8f01-f173e81b354b 8f49afcfbfc4731635261095cc71c6ba {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.RNA-Seq.genomic.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.genomic.gdc_realn.bam 8091103107 BAM genomic harmonized CPTAC3 85b39859-53d5-432e-8de3-6414ba9a8c2d 19b89bac003d271e572f0a8172c6c7c1 {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.RNA-Seq.genomic.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.genomic.gdc_realn.bam 8098789573 BAM genomic harmonized CPTAC3 60921e80-aff2-42e4-a08e-cd21d63f97bf ade0b4534f4b94dfda2326e1296b8f2a {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.RNA-Seq.S5_L008_R1.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3654425055 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 085194c0-53be-43de-9f7b-6d3fd07c01b0 2f2b5ecbff032014315c15e1b05dfdbe {"aliquot_tag": "ALQ_c226d74e", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.RNA-Seq.S5_L008_R2.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3797002321 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 58917e34-8967-443d-9641-6ea88154f9cb 83bb40da7d62fc557458b667081583ce {"aliquot_tag": "ALQ_c226d74e", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.RNA-Seq.S9_L003_R1.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3354523366 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 5e588c16-67a3-4ac9-b85f-691be4bc581d a9ebdb16b7c3affe8d3d0ffb63d5ff44 {"aliquot_tag": "ALQ_41285c71", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.RNA-Seq.S9_L003_R2.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R2_001.fastq.gz 3455484024 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 14f12e3e-32fa-48db-b3c9-e3127ffc2ba2 86035e53d20fb89d08ecb46bd0d2c2f9 {"aliquot_tag": "ALQ_41285c71", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.RNA-Seq.transcriptome.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.transcriptome.gdc_realn.bam 9304743474 BAM transcriptome harmonized CPTAC3 9d54baf0-fa01-43ad-b803-236591c1d0cb 5edc6da0104abac0b234710e5c488b4b {"aliquot_tag": "ALQ_c226d74e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.RNA-Seq.transcriptome.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.transcriptome.gdc_realn.bam 9553570576 BAM transcriptome harmonized CPTAC3 359c0391-a5e0-40c5-9c37-d7b6c50b2688 14e89fc636ce4828fbfc4a527881547c {"aliquot_tag": "ALQ_41285c71", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.WGS.A C3N-02339 LSCC WGS tissue_normal CPT0136660006 CPT0136660006.WholeGenome.RP-1303.bam 61360540853 BAM submitted_aligned CPTAC3 41658b62-ed56-40af-bc0d-7b268ba8b4e0 d13ac77344120047de38c9b9844cd6aa {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.WGS.A.hg38 C3N-02339 LSCC WGS tissue_normal CPT0136660006 d99afba5-4370-4faf-a2ed-6a8739dfd22f_wgs_gdc_realn.bam 88503423270 BAM harmonized CPTAC3 2b69e82b-fe1c-4997-bc1c-d61e2c7a4fbd ab81ca05835cc41261d775418e4b1b38 {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.WGS.N C3N-02339 LSCC WGS blood_normal CPT0136750002 CPT0136750002.WholeGenome.RP-1303.bam 69124015680 BAM submitted_aligned CPTAC3 48615ca0-b2a1-42b2-a505-a0a5da2fbfba cee62749d6b9b3d4d8df32f97665d31f {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02339.WGS.N.hg38 C3N-02339 LSCC WGS blood_normal CPT0136750002 53109f4a-593a-4191-92b6-a188273d4470_wgs_gdc_realn.bam 98788562322 BAM harmonized CPTAC3 a19f353c-2b13-4f53-b62a-6c7c11516a13 c090674b3880954353dda91bb7e21376 {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02339.WGS.T C3N-02339 LSCC WGS tumor CPT0136640009 CPT0136640009.WholeGenome.RP-1303.bam 80088162756 BAM submitted_aligned CPTAC3 f3819237-c041-4585-b015-f0a7bdc3d834 42809585accf42c7ebb267d26be028c6 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.WGS.T.hg38 C3N-02339 LSCC WGS tumor CPT0136640009 dd35d5e7-e2bd-4497-89a1-f7f48740de73_wgs_gdc_realn.bam 117259664944 BAM harmonized CPTAC3 d27f76b7-9654-4592-ab83-7af0e18da134 5aa77fe7ba0ca3c88bf32483dde0d044 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.WXS.A C3N-02339 LSCC WXS tissue_normal CPT0136660006 CPT0136660006.WholeExome.RP-1303.bam 27920603666 BAM submitted_aligned CPTAC3 1e5e95e2-998a-4d18-a7ca-b98784611cc8 6773249277bc3bb3c369b47f8eb03203 {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.WXS.A.hg38 C3N-02339 LSCC WXS tissue_normal CPT0136660006 d99afba5-4370-4faf-a2ed-6a8739dfd22f_wxs_gdc_realn.bam 38537906426 BAM harmonized CPTAC3 e0491974-755e-46cc-9c4c-2ba9000c0c18 5442f72a4a74ca77bd3817e74b934cdb {"aliquot_tag": "ALQ_5299cadf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02339.WXS.N C3N-02339 LSCC WXS blood_normal CPT0136750002 CPT0136750002.WholeExome.RP-1303.bam 24816921906 BAM submitted_aligned CPTAC3 7cc27769-62c0-4bd4-a5d7-71f79ad7c3c7 dbaa937177b244ba4bd8c3cdf1926531 {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02339.WXS.N.hg38 C3N-02339 LSCC WXS blood_normal CPT0136750002 53109f4a-593a-4191-92b6-a188273d4470_wxs_gdc_realn.bam 34737318540 BAM harmonized CPTAC3 d1fc6600-5eae-4271-8f35-768cc945d06e 90bb3eaf12b2eda29c40905e6f079da0 {"aliquot_tag": "ALQ_d908a7b3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02339.WXS.T C3N-02339 LSCC WXS tumor CPT0136640009 CPT0136640009.WholeExome.RP-1303.bam 23872684402 BAM submitted_aligned CPTAC3 7facdaa4-93ef-49fa-83b9-5813705206d6 e36904a8ed3540a114d7273c9defb346 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02339.WXS.T.hg38 C3N-02339 LSCC WXS tumor CPT0136640009 dd35d5e7-e2bd-4497-89a1-f7f48740de73_wxs_gdc_realn.bam 33317060282 BAM harmonized CPTAC3 7dd5b1a7-554e-4011-b023-5485a5135ee0 c4647081be66d2ae17ac8a040c36e795 {"aliquot_tag": "ALQ_b8e6842e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02372.MethArray.Green.T C3N-02372 UCEC Methylation_Array tumor CPT0137140011 203561450102_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 d190171c-8b6a-402d-ba3a-49c4ce7b7147 0ba3f25eee84d1eb4780b35f948c1598 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.MethArray.Red.T C3N-02372 UCEC Methylation_Array tumor CPT0137140011 203561450102_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 e0efc784-fd53-451f-93cd-7e6e2d104602 a4601407c1e47ba14e9e58e992b092be {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.miRNA-Seq.S40_L004_R1.T C3N-02372 UCEC miRNA-Seq tumor CPT0137140018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTCAGA_S40_L004_R1_001.unaln.bam 250876986 BAM S40_L004_R1 submitted_unaligned CPTAC3 3de97036-a852-4fb6-88f8-40b255875090 96b0751292822e10e21fa7589ce35199 {"aliquot_tag": "ALQ_6d88bef5", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.miRNA-Seq.T.hg38 C3N-02372 UCEC miRNA-Seq tumor CPT0137140018 d8fe948e-f60f-46a2-a2da-f7f9eb94cdf6_mirnaseq_gdc_realn.bam 286912787 BAM harmonized CPTAC3 084f09f8-8f3a-4950-a490-e0eeb2e7d329 78028f9cb7ea9deff48282f9c9a4c97b {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.chimeric.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.chimeric.gdc_realn.bam 43779997 BAM chimeric harmonized CPTAC3 889fe4e0-75aa-4665-b1f8-a91c0a9e1a0c 6fc2bb8150bed02967b16763f66d1806 {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.chimeric.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.chimeric.gdc_realn.bam 187106011 BAM chimeric harmonized CPTAC3 2915019b-0061-49c8-8d05-e7ca7c598679 e32f49e16f9d0adac8a7519695e5e26c {"aliquot_tag": "ALQ_c8bfda11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.genomic.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.genomic.gdc_realn.bam 9397145679 BAM genomic harmonized CPTAC3 17df60ca-9915-4c4e-88ea-c9ead2f0c800 6705f95c6f802b0c1fe84813cf13e12a {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.genomic.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.genomic.gdc_realn.bam 9399482126 BAM genomic harmonized CPTAC3 e695266e-3d5c-40a2-b622-c9b6f9a3876c 53db58ae0d168e6fb5f085fd3faa0754 {"aliquot_tag": "ALQ_c8bfda11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.S4_L001_R1.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R1_001.fastq.gz 4203360368 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 3751fab9-a9a6-4244-b11a-4b5ef741449c 418027aa4a8e03a01d02e07b9357e1aa {"aliquot_tag": "ALQ_6d88bef5", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.S4_L001_R2.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R2_001.fastq.gz 4921461291 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 d7bd6052-7dc7-4b81-8df5-4e0b455c2f11 4b008f83fb2adedb2ebc73c5f4e32a14 {"aliquot_tag": "ALQ_6d88bef5", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.S71_R1.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R1_001.fastq.gz 5767955157 FASTQ S71_R1 submitted_unaligned CPTAC3 ddf2ac99-8b99-47ba-8e8a-e4ef4387f7f0 7ef4aca9786631caec5e3e854b0165d4 {"aliquot_tag": "ALQ_c8bfda11", "sample": "S71", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.S71_R2.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R2_001.fastq.gz 6051316002 FASTQ S71_R2 submitted_unaligned CPTAC3 bfd2c27c-8e33-484a-b097-b02f237d85e5 72f179a5c8020b96764fc258709cc468 {"aliquot_tag": "ALQ_c8bfda11", "sample": "S71", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.transcriptome.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.transcriptome.gdc_realn.bam 10475640335 BAM transcriptome harmonized CPTAC3 7e2eed04-0dc2-4059-9edf-40c38836753a a58aaf58fafd93c6bc578cdae199d36d {"aliquot_tag": "ALQ_6d88bef5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.RNA-Seq.transcriptome.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.transcriptome.gdc_realn.bam 7152718012 BAM transcriptome harmonized CPTAC3 0d3206d9-3650-4905-ab8f-0da7fa1faa4c bd39cf203167d0fbb5a17518a38c3546 {"aliquot_tag": "ALQ_c8bfda11", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.WGS.N C3N-02372 UCEC WGS blood_normal CPT0137260002 CPT0137260002.WholeGenome.RP-1303.bam 71370609558 BAM submitted_aligned CPTAC3 0f256c42-f149-44d4-986d-45e084a1ae89 029c3b9c967637073997a611e8de09c4 {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02372.WGS.N.hg38 C3N-02372 UCEC WGS blood_normal CPT0137260002 081a4e84-b6f6-4f0b-b704-d354949b4730_wgs_gdc_realn.bam 103395445838 BAM harmonized CPTAC3 dc554ad1-c4ea-4b23-9a85-02ac88c77398 eb8cd01be3ef43e4069a9353d3f1292f {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02372.WGS.T C3N-02372 UCEC WGS tumor CPT0137140011 CPT0137140011.WholeGenome.RP-1303.bam 91188488328 BAM submitted_aligned CPTAC3 d5b34a42-6bce-46c8-aaf0-b86ace2f5333 1c6bf5c15316d38116b744695b155e92 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.WGS.T.hg38 C3N-02372 UCEC WGS tumor CPT0137140011 e3518070-0733-4f7e-b857-3bb3d89a8041_wgs_gdc_realn.bam 130851163214 BAM harmonized CPTAC3 49d1cacd-a3c9-42d7-b1d1-7c01ca5dabc0 99f571f55c52b597e7018e7d5fce5bb9 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.WXS.N C3N-02372 UCEC WXS blood_normal CPT0137260002 CPT0137260002.WholeExome.RP-1303.bam 24071547733 BAM submitted_aligned CPTAC3 f596eb95-32a4-4d9c-aa90-6d45e8b2afac a6c8efb04254195035714c4b0148fe8c {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02372.WXS.N.hg38 C3N-02372 UCEC WXS blood_normal CPT0137260002 081a4e84-b6f6-4f0b-b704-d354949b4730_wxs_gdc_realn.bam 32772113930 BAM harmonized CPTAC3 4bcc4a59-d8f7-48ed-9e34-7fc5150895a4 95577e7b2931c44934780ecfcef611fd {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02372.WXS.T C3N-02372 UCEC WXS tumor CPT0137140011 CPT0137140011.WholeExome.RP-1303.bam 21927969322 BAM submitted_aligned CPTAC3 f515b7de-1bc2-457b-bfd6-9a433d078a17 af8b423249b864ceea0360d437a71b18 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02372.WXS.T.hg38 C3N-02372 UCEC WXS tumor CPT0137140011 e3518070-0733-4f7e-b857-3bb3d89a8041_wxs_gdc_realn.bam 31108072202 BAM harmonized CPTAC3 8f994400-ef0d-491e-8f37-37240e866bde cff120c3f499ea1f65192a54475285ea {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02374.MethArray.Green.A C3N-02374 LSCC Methylation_Array tissue_normal CPT0146400006 203219720176_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 74df72cf-abd8-4efd-af13-d216704cccd1 fc90754005b9c1a9bd6ea0d7b02169ad {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.MethArray.Green.T C3N-02374 LSCC Methylation_Array tumor CPT0146380010 203219760081_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1bac1a43-122f-4377-8140-9f50f111d8b2 00d30d033aff718aeb22e4e59827a62f {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.MethArray.Red.A C3N-02374 LSCC Methylation_Array tissue_normal CPT0146400006 203219720176_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 c7777fc9-ae90-45fc-8cea-1363ae2281d2 d03db61de8de70d652c557c9fb791362 {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.MethArray.Red.T C3N-02374 LSCC Methylation_Array tumor CPT0146380010 203219760081_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 930a2ac7-f2ae-49b2-ac78-3d0544619893 6e7b0dc6ddafa7abfe67cf10e0e8a664 {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.miRNA-Seq.A.hg38 C3N-02374 LSCC miRNA-Seq tissue_normal CPT0146400009 66883198-5e0f-48e0-b87f-7a49a2177a5f_mirnaseq_gdc_realn.bam 226116265 BAM harmonized CPTAC3 7088a176-caf0-4c8e-8895-46a840b1fcee 5df6d8565177d8211920f8324b1ebca9 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.miRNA-Seq.S20_L001_R1.T C3N-02374 LSCC miRNA-Seq tumor CPT0146380007 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGGCC_S20_L001_R1_001.unaln.bam 213962477 BAM S20_L001_R1 submitted_unaligned CPTAC3 05fe64cc-ca7f-4c40-a152-57b69334ddec a7705e5b45123bb6ce68af006cfe3090 {"aliquot_tag": "ALQ_c0a6dc82", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.miRNA-Seq.S32_L002_R1.A C3N-02374 LSCC miRNA-Seq tissue_normal CPT0146400009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGGCG_S32_L002_R1_001.unaln.bam 203313204 BAM S32_L002_R1 submitted_unaligned CPTAC3 16f54b7c-714f-406e-a174-18011b4f3872 f8604196d49f12a77814136fdbb0b3d5 {"aliquot_tag": "ALQ_a6b8afc", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.miRNA-Seq.T.hg38 C3N-02374 LSCC miRNA-Seq tumor CPT0146380007 25dcf1a0-f5c6-45f3-b774-7fe9ff95b65c_mirnaseq_gdc_realn.bam 246248803 BAM harmonized CPTAC3 4f927a2c-e35b-43d5-a112-4e281a1b396a 25d257e741b23b6a69484825d9b937ed {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.RNA-Seq.chimeric.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.chimeric.gdc_realn.bam 26299032 BAM chimeric harmonized CPTAC3 de85c4e5-1913-45c5-a79b-7cfa2c1e0568 28698e5f9157102ff61586cf8b4f90e9 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.RNA-Seq.chimeric.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.chimeric.gdc_realn.bam 17449109 BAM chimeric harmonized CPTAC3 8cb83148-175e-483e-9bc5-1ab9a6cb61db ef792bbb57db2408d6839b6eb01cf715 {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.RNA-Seq.genomic.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.genomic.gdc_realn.bam 7694840309 BAM genomic harmonized CPTAC3 602a1756-ea03-474f-960b-7dd3a582415c ee17a83aa72523e4a11d6bb0673b7705 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.RNA-Seq.genomic.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.genomic.gdc_realn.bam 6542059473 BAM genomic harmonized CPTAC3 b493c152-9fdf-4ff7-87c7-546db273077b 90933f18ce798731684a2df8dcb8b79d {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.RNA-Seq.S19_L005_R1.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3462101571 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 a627c7dd-6641-4525-b9ab-9eb41bd0430c b6d976b06392bd404ac3598ea3a79f6c {"aliquot_tag": "ALQ_a6b8afc", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.RNA-Seq.S19_L005_R2.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3624979527 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 930774a1-6b67-4e6c-a11f-d6065ffa6d94 bd1d861413686c6627650395de905e19 {"aliquot_tag": "ALQ_a6b8afc", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.RNA-Seq.S4_L001_R1.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 2744161249 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 d4f2b044-07e4-40e4-bece-b1b724a8eb73 e3651f8333901c9e9a03a512cc468c2c {"aliquot_tag": "ALQ_c0a6dc82", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.RNA-Seq.S4_L001_R2.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 2942859559 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 bda29cc6-f418-4288-9d26-5aab3892b4df 283cfdd925550c28a4054ccf7114ff94 {"aliquot_tag": "ALQ_c0a6dc82", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.RNA-Seq.transcriptome.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.transcriptome.gdc_realn.bam 9018643377 BAM transcriptome harmonized CPTAC3 12139c43-8818-4296-af56-63b818e84a49 36f1da52eadd04281a32e5654e7d18c0 {"aliquot_tag": "ALQ_a6b8afc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.RNA-Seq.transcriptome.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.transcriptome.gdc_realn.bam 8458341995 BAM transcriptome harmonized CPTAC3 8b9125b3-752f-4a71-b0ca-204f0dd71985 e82b31f1e990e92884fd26adb2f6ba2b {"aliquot_tag": "ALQ_c0a6dc82", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.WGS.A C3N-02374 LSCC WGS tissue_normal CPT0146400006 CPT0146400006.WholeGenome.RP-1303.bam 60953607452 BAM submitted_aligned CPTAC3 316ec992-18bc-4aff-b20f-a8f65e085658 9b32995a8497bec7c7b84935f69bddd6 {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.WGS.A.hg38 C3N-02374 LSCC WGS tissue_normal CPT0146400006 c63f8b1c-3190-4d68-a36c-d18296220db4_wgs_gdc_realn.bam 89932505162 BAM harmonized CPTAC3 2b83dc75-f927-4f9f-ab0f-8d6179e81432 c45091cfbc7067d351727e27d42c2d96 {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.WGS.N C3N-02374 LSCC WGS blood_normal CPT0146410002 CPT0146410002.WholeGenome.RP-1303.bam 58166987291 BAM submitted_aligned CPTAC3 1e99e8b3-d8d2-4f8a-9a6a-9ce391887418 9d8b84179fb35b0828db0fdb9a785103 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02374.WGS.N.hg38 C3N-02374 LSCC WGS blood_normal CPT0146410002 0db610c9-ca9b-4565-a6ba-e6d8103918ad_wgs_gdc_realn.bam 84947702213 BAM harmonized CPTAC3 4e16cc46-ac3e-4426-852c-a2229b92e01f 8f2546d310f67cd384b7009b73d52fe1 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02374.WGS.T C3N-02374 LSCC WGS tumor CPT0146380010 CPT0146380010.WholeGenome.RP-1303.bam 56815015764 BAM submitted_aligned CPTAC3 571f66de-01e0-4372-88b8-8a570d3ee5c6 1046580ab755549f1799e3181f7f6b4b {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.WGS.T.hg38 C3N-02374 LSCC WGS tumor CPT0146380010 55efde83-7f58-4056-817a-d992871a83f6_wgs_gdc_realn.bam 82973215891 BAM harmonized CPTAC3 c14ac1e7-9708-42ab-88d5-6168a0e43aeb e0b8998a2375f0fc2b26f4dcae9cb0f2 {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.WXS.A C3N-02374 LSCC WXS tissue_normal CPT0146400006 CPT0146400006.WholeExome.RP-1303.bam 24768142273 BAM submitted_aligned CPTAC3 41594cd0-bc5b-4cc4-9367-f6d3e4badb56 ccef5cf76444133afae2464a932e426e {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.WXS.A.hg38 C3N-02374 LSCC WXS tissue_normal CPT0146400006 c63f8b1c-3190-4d68-a36c-d18296220db4_wxs_gdc_realn.bam 34475659228 BAM harmonized CPTAC3 5b4a7ae5-8d17-44ef-a667-80adbd070b32 d6d0f9bff3b4c6be65970fcc2200dc2a {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02374.WXS.N C3N-02374 LSCC WXS blood_normal CPT0146410002 CPT0146410002.WholeExome.RP-1303.bam 27373948445 BAM submitted_aligned CPTAC3 376aefcd-1fe4-4ec6-afbd-7fc7c0e06c01 48c1b563cc51d877f953eaaa43c6e761 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02374.WXS.N.hg38 C3N-02374 LSCC WXS blood_normal CPT0146410002 0db610c9-ca9b-4565-a6ba-e6d8103918ad_wxs_gdc_realn.bam 37814947685 BAM harmonized CPTAC3 b0143e55-1562-4f7c-ab33-340309115bf0 5db9d16e5ca30fdebf78136895d63f14 {"aliquot_tag": "ALQ_a0d97ac4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02374.WXS.T C3N-02374 LSCC WXS tumor CPT0146380010 CPT0146380010.WholeExome.RP-1303.bam 27177843084 BAM submitted_aligned CPTAC3 5db5aaf6-e24c-40f7-8d3e-945eae843e26 e52a7ce47403e5adc528f23d0d772c26 {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02374.WXS.T.hg38 C3N-02374 LSCC WXS tumor CPT0146380010 55efde83-7f58-4056-817a-d992871a83f6_wxs_gdc_realn.bam 37861647979 BAM harmonized CPTAC3 7464ce2c-3c1e-489c-9725-276850d2a25c 6e998db82b4ddbfe049a882297a421ea {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.MethArray.Green.A C3N-02375 LSCC Methylation_Array tissue_normal CPT0146500006 203220070084_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7433e924-3654-4344-a6a2-33d831df0e8c aef56b805fb094298be7aa404fb4b693 {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.MethArray.Green.T C3N-02375 LSCC Methylation_Array tumor CPT0146480010 203219650176_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 e186fb4c-1f53-4b24-87ee-9af77369b103 15dbfe3c0e4921d2440959d80329193a {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.MethArray.Red.A C3N-02375 LSCC Methylation_Array tissue_normal CPT0146500006 203220070084_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 dfbc44d6-8730-4933-9e86-80c4719b45f7 d195036a94565821291f79bba85ce19e {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.MethArray.Red.T C3N-02375 LSCC Methylation_Array tumor CPT0146480010 203219650176_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 09595a37-8b2d-46c7-86df-ddc64825edfb c1de5088602c5f7bbe282346ff2a5a18 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.miRNA-Seq.A.hg38 C3N-02375 LSCC miRNA-Seq tissue_normal CPT0146500009 5a05b9f0-a527-42ff-adad-82196ef3f161_mirnaseq_gdc_realn.bam 283776980 BAM harmonized CPTAC3 0a51eeef-ff6b-44de-9ad0-2f89965cd23e f4c134a02ca04405be17367dfb769edf {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.miRNA-Seq.S21_L001_R1.T C3N-02375 LSCC miRNA-Seq tumor CPT0146480007 181219_UNC31-K00269_0173_BHYGJJBBXX_GTTTCG_S21_L001_R1_001.unaln.bam 171547783 BAM S21_L001_R1 submitted_unaligned CPTAC3 5451c0db-a2e9-4fdd-95e9-712f6d4e02bf a4cfe944bf6f87e00960a4cfb531f911 {"aliquot_tag": "ALQ_dda3ec3a", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.miRNA-Seq.S33_L002_R1.A C3N-02375 LSCC miRNA-Seq tissue_normal CPT0146500009 181219_UNC31-K00269_0173_BHYGJJBBXX_CATGGC_S33_L002_R1_001.unaln.bam 251860614 BAM S33_L002_R1 submitted_unaligned CPTAC3 40ddd37f-9a4d-4992-9815-1eb0cd092b35 b92ac71a8d0ed5492cb02eaa9071d3ac {"aliquot_tag": "ALQ_c1375959", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.miRNA-Seq.T.hg38 C3N-02375 LSCC miRNA-Seq tumor CPT0146480007 2055d83a-87e0-41fa-bfe2-1992c0317442_mirnaseq_gdc_realn.bam 197076046 BAM harmonized CPTAC3 0464945e-bd9d-4d5e-8f73-82b4b8b866d3 863b13c660ec57172ba0e04630d1b74b {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.RNA-Seq.chimeric.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.chimeric.gdc_realn.bam 30710775 BAM chimeric harmonized CPTAC3 1365d901-b147-4c5c-bbf3-295c3b4c94ac de989aff8a489c0c0dd69741656bc4ea {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.RNA-Seq.chimeric.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.chimeric.gdc_realn.bam 19130371 BAM chimeric harmonized CPTAC3 2be52fe0-5b14-489f-9c1e-aad2bdcc8edc fcee45d6dba454b947318d77c025a155 {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.RNA-Seq.genomic.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.genomic.gdc_realn.bam 8518494206 BAM genomic harmonized CPTAC3 0ea35eaa-726f-402b-a0aa-db599fd87ff6 3c513ff07d1c994a37ab564a4ba5f10e {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.RNA-Seq.genomic.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.genomic.gdc_realn.bam 6804558921 BAM genomic harmonized CPTAC3 daca94c2-f76a-4d48-9998-d5e98287176f 1a6a19edc4d8d0d1077b882964da1110 {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.RNA-Seq.S18_L005_R1.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3968971217 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 297e37ea-46c3-43d0-a7de-609431e4bde1 332fb581796600e8f94b39912ab32f15 {"aliquot_tag": "ALQ_c1375959", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.RNA-Seq.S18_L005_R2.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4154746369 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 51f3310d-530d-4684-8697-4e3084bb3d07 a0f4b18628ae0147cb4e014af04232ad {"aliquot_tag": "ALQ_c1375959", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.RNA-Seq.S5_L002_R1.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3142352798 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 e21ad989-8121-4808-93c6-d07012c3d218 32f2ad1111473c5c277e356a1da2bf81 {"aliquot_tag": "ALQ_dda3ec3a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.RNA-Seq.S5_L002_R2.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3389401947 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 32a83be0-97a7-4e68-a2a8-8a7b722e4697 b203327ad983433885e5612a203b81cf {"aliquot_tag": "ALQ_dda3ec3a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.RNA-Seq.transcriptome.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.transcriptome.gdc_realn.bam 10420796459 BAM transcriptome harmonized CPTAC3 b35756b7-66a5-4a61-bc82-bf60c5e91239 5b17b23398245f0ee078aab0a9a15af8 {"aliquot_tag": "ALQ_c1375959", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.RNA-Seq.transcriptome.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.transcriptome.gdc_realn.bam 9996164720 BAM transcriptome harmonized CPTAC3 eda6489e-62e1-43c2-8045-7c3faa62d984 c18b61f13e49cdf6a374db8d856bc5b3 {"aliquot_tag": "ALQ_dda3ec3a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.WGS.A C3N-02375 LSCC WGS tissue_normal CPT0146500006 CPT0146500006.WholeGenome.RP-1303.bam 58873288250 BAM submitted_aligned CPTAC3 24db5348-9cbc-418f-81c1-ead012741303 6d1c6ed27a56676ec51946e424ed336a {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.WGS.A.hg38 C3N-02375 LSCC WGS tissue_normal CPT0146500006 d409515c-a3f0-420a-b761-869c131bf575_wgs_gdc_realn.bam 86498872025 BAM harmonized CPTAC3 e70c2a93-a5b9-46cc-8992-cf1d23cdc2be cec54e5cc6ad8b94e9d158ba804144a9 {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.WGS.N C3N-02375 LSCC WGS blood_normal CPT0146510002 CPT0146510002.WholeGenome.RP-1303.bam 71664809221 BAM submitted_aligned CPTAC3 362ce634-07f9-4ba4-a623-60a9e8f48afb 4eee54f924693aedf785734a1b4dde36 {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02375.WGS.N.hg38 C3N-02375 LSCC WGS blood_normal CPT0146510002 c17874dd-d150-43ac-9eb8-a6d73af712bc_wgs_gdc_realn.bam 105408582639 BAM harmonized CPTAC3 63d594ef-815a-4656-bf69-754be2faecce 065891e7634e2ccb3ee3ad27b21e204f {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02375.WGS.T C3N-02375 LSCC WGS tumor CPT0146480010 CPT0146480010.WholeGenome.RP-1303.bam 74428848707 BAM submitted_aligned CPTAC3 3094b38f-67a7-466f-9197-d54b696c067d 2df9c9d16a0ab6726cb4773a7bdbcfa4 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.WGS.T.hg38 C3N-02375 LSCC WGS tumor CPT0146480010 495a32a0-f447-400d-a8b5-893945087969_wgs_gdc_realn.bam 107431913597 BAM harmonized CPTAC3 a1901f1a-5c30-4b7d-bd51-19d3f74f0d1c f4219d321fd425d9b13438806fa40646 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.WXS.A C3N-02375 LSCC WXS tissue_normal CPT0146500006 CPT0146500006.WholeExome.RP-1303.bam 14774559340 BAM submitted_aligned CPTAC3 33c1e931-cecd-4b3b-b5bf-9e9eb004e51b b617f072f3b3e2d930e983fa9e7d51a8 {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.WXS.A.hg38 C3N-02375 LSCC WXS tissue_normal CPT0146500006 d409515c-a3f0-420a-b761-869c131bf575_wxs_gdc_realn.bam 20406148962 BAM harmonized CPTAC3 1a10521b-0be1-4192-8b16-b421132e1f45 d19dbff3f7b7f3baecc6b4114a9f4b1b {"aliquot_tag": "ALQ_518844c8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02375.WXS.N C3N-02375 LSCC WXS blood_normal CPT0146510002 CPT0146510002.WholeExome.RP-1303.bam 22124022149 BAM submitted_aligned CPTAC3 5f9075f3-ce84-47de-af00-295c198fb1c2 b03bd3613942ebaae771bd6748c1724d {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02375.WXS.N.hg38 C3N-02375 LSCC WXS blood_normal CPT0146510002 c17874dd-d150-43ac-9eb8-a6d73af712bc_wxs_gdc_realn.bam 30706822180 BAM harmonized CPTAC3 a12cda8d-52da-4e45-8d77-de7f80632bae faff75ca830bacf6fd8e8136416cb9cb {"aliquot_tag": "ALQ_6b85a961", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02375.WXS.T C3N-02375 LSCC WXS tumor CPT0146480010 CPT0146480010.WholeExome.RP-1303.bam 24863350292 BAM submitted_aligned CPTAC3 98e0932a-8321-42e4-b194-855cf8137a73 5aa17df4ba0e93fd2e4db387b6e277d4 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02375.WXS.T.hg38 C3N-02375 LSCC WXS tumor CPT0146480010 495a32a0-f447-400d-a8b5-893945087969_wxs_gdc_realn.bam 34126343746 BAM harmonized CPTAC3 41787f8c-4066-4cb7-9ff5-eced3341f523 808d4f7ea4f217f7d31787554a81dd30 {"aliquot_tag": "ALQ_5adc48d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.MethArray.Green.A C3N-02379 LUAD Methylation_Array tissue_normal CPT0146600009 203219650098_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1ea21b72-04b3-4eac-8817-95844f0f3084 3752c2c6fd8973d3c85b9e3d53ec8dde {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.MethArray.Green.T C3N-02379 LUAD Methylation_Array tumor CPT0146580010 203028200023_R03C01_Grn.idat 13676232 IDAT Green NA CPTAC3 30f03b0c-c1f6-4bdd-8cbc-9f06c0805146 f580e1406e886ce1e24275866e64cb06 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.MethArray.Red.A C3N-02379 LUAD Methylation_Array tissue_normal CPT0146600009 203219650098_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 75178db8-fa1c-4bd8-b1fb-948e915cd2df 19381be80f2ccbb19f79334d6b3d5a5b {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.MethArray.Red.T C3N-02379 LUAD Methylation_Array tumor CPT0146580010 203028200023_R03C01_Red.idat 13676232 IDAT Red NA CPTAC3 e3131e04-b0b6-4451-b0a1-ad1793f371e4 8d0ed2c6509c5f2b4250c8a33d8a8e7a {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.miRNA-Seq.A.hg38 C3N-02379 LUAD miRNA-Seq tissue_normal CPT0146600006 b74017a9-d66f-48ed-ab3e-17d20adfd64e_mirnaseq_gdc_realn.bam 242228302 BAM harmonized CPTAC3 79b3827c-76bc-4cfa-aa8e-1c095416f5a5 512fbba07b327cbc12be1ae2fa48f9ff {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.miRNA-Seq.S10_L003_R1.T C3N-02379 LUAD miRNA-Seq tumor CPT0146580007 181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L003_R1_001.unaln.bam 229225643 BAM S10_L003_R1 submitted_unaligned CPTAC3 3967f5c4-c979-43f5-8a63-7da1133fa34e 9157a02e2385edbb15c8e155cf9691af {"aliquot_tag": "ALQ_16ff3f9f", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.miRNA-Seq.S24_L003_R1.A C3N-02379 LUAD miRNA-Seq tissue_normal CPT0146600006 181108_UNC31-K00269_0162_AH255GBBXY_TCGGCA_S24_L003_R1_001.unaln.bam 212190486 BAM S24_L003_R1 submitted_unaligned CPTAC3 509d8096-99df-4816-b307-139b17e8a5c1 24a29b966fbfcc7307075551d5fa9f49 {"aliquot_tag": "ALQ_d71c3666", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.miRNA-Seq.T.hg38 C3N-02379 LUAD miRNA-Seq tumor CPT0146580007 d2d0e91b-12ec-4dbe-8c1d-c419f630e615_mirnaseq_gdc_realn.bam 252121469 BAM harmonized CPTAC3 06932e2c-fa54-4e3d-991c-ebee02c0b491 1681a5a084457475cbdbe935d48c925b {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.RNA-Seq.chimeric.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.chimeric.gdc_realn.bam 47556607 BAM chimeric harmonized CPTAC3 ba3ee5a5-9804-4d7f-8585-cb4f684054d1 e8f9b116fe51c82a72b6a2857c7b94fc {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.RNA-Seq.chimeric.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.chimeric.gdc_realn.bam 55902629 BAM chimeric harmonized CPTAC3 26fe3009-12b5-4ac0-b6bf-56ee829fe79a 1f9844881fd6b07276bfd69372a39fbe {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.RNA-Seq.genomic.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.genomic.gdc_realn.bam 8438943813 BAM genomic harmonized CPTAC3 fd5efe14-7359-4f61-889c-9ac15869f9be 84282b5281bd2748de75c235429a109c {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.RNA-Seq.genomic.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.genomic.gdc_realn.bam 10008829484 BAM genomic harmonized CPTAC3 8631d872-5d34-403f-a5cc-77eb1f4cddc5 2da4389801cf217857c1d05017eb26b0 {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.RNA-Seq.S17_L005_R1.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3975417083 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 4b819950-6a36-4118-a52a-12fe2b163bc6 6988ca1931ff4eb7e3064812ed07f35a {"aliquot_tag": "ALQ_d71c3666", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.RNA-Seq.S17_L005_R2.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 4193483753 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 9230762d-5acf-4492-855b-fa786e9edfe9 a5578c1afc9e6c25ae315533c4bb29ef {"aliquot_tag": "ALQ_d71c3666", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.RNA-Seq.S5_L008_R1.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R1_001.fastq.gz 4587162470 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 5288ad0d-7c3c-4d0d-b975-ecf62a09a09f ceb58aa4262a05ceb302f68e5ea7298e {"aliquot_tag": "ALQ_16ff3f9f", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.RNA-Seq.S5_L008_R2.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R2_001.fastq.gz 4984677667 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 c5c7076f-a207-4abc-a1fb-3a7868d3dab7 d878c8d444a1634bc57c6b16df08af62 {"aliquot_tag": "ALQ_16ff3f9f", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.RNA-Seq.transcriptome.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.transcriptome.gdc_realn.bam 9358521541 BAM transcriptome harmonized CPTAC3 198b8f17-3f20-4aaa-ace2-4baed9f711d9 7fdf493f666fe08bf09486f97d04cdd8 {"aliquot_tag": "ALQ_d71c3666", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.RNA-Seq.transcriptome.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.transcriptome.gdc_realn.bam 13123674276 BAM transcriptome harmonized CPTAC3 33a147f6-ac3c-416c-98dd-720fff245068 7b21fabd940d7558c0ee737e6e71ba6f {"aliquot_tag": "ALQ_16ff3f9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.WGS.A C3N-02379 LUAD WGS tissue_normal CPT0146600009 CPT0146600009.WholeGenome.RP-1303.bam 60344229444 BAM submitted_aligned CPTAC3 5269fbeb-cf8c-44cd-a368-eb3835fc0ec9 68fc1253c72ae3777ceb4aea110c2225 {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.WGS.A.hg38 C3N-02379 LUAD WGS tissue_normal CPT0146600009 0581226d-c103-4250-875b-809c077595b7_wgs_gdc_realn.bam 89549929932 BAM harmonized CPTAC3 f6feed2b-0e98-4711-aa28-0e5d80a5885b 017078c6302ece06305ad5c42b429b72 {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.WGS.N C3N-02379 LUAD WGS blood_normal CPT0146610002 CPT0146610002.WholeGenome.RP-1303.bam 57953735057 BAM submitted_aligned CPTAC3 605686b5-44c3-451e-a1d5-4e6136aa7645 951ed044cf99c078e42d9308ad5fc424 {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02379.WGS.N.hg38 C3N-02379 LUAD WGS blood_normal CPT0146610002 65f832db-5d04-48a3-b292-b4554eadc912_wgs_gdc_realn.bam 84212898575 BAM harmonized CPTAC3 768b0208-edb7-42a2-a514-51490b939029 4a5b54bd089e47aeddea45a05e1a1b26 {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02379.WGS.T C3N-02379 LUAD WGS tumor CPT0146580010 CPT0146580010.WholeGenome.RP-1303.bam 62412784307 BAM submitted_aligned CPTAC3 fdf700fe-f799-4579-a0ec-fd0bfbe9d7d4 56fb86fd72221b34c16e8ca7c3ee3718 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.WGS.T.hg38 C3N-02379 LUAD WGS tumor CPT0146580010 41acd1fe-34cc-4b28-8c65-2604cbd849f6_wgs_gdc_realn.bam 91998469500 BAM harmonized CPTAC3 e48ec09d-b9ed-44ff-bc5f-2f35fedefeee 6229cc06dc0740623caa0a39b79675db {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.WXS.A C3N-02379 LUAD WXS tissue_normal CPT0146600009 CPT0146600009.WholeExome.RP-1303.bam 23943479921 BAM submitted_aligned CPTAC3 55b8d76c-bde9-497c-82b8-b5dfadbb6348 ed5c9600c5684970ea2863b67ed46b76 {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.WXS.A.hg38 C3N-02379 LUAD WXS tissue_normal CPT0146600009 0581226d-c103-4250-875b-809c077595b7_wxs_gdc_realn.bam 32714457542 BAM harmonized CPTAC3 05ca5873-ef73-4d1f-826c-6ab3609049f8 7ef46d188456fe458fa21f657dc662be {"aliquot_tag": "ALQ_47a32bf7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02379.WXS.N C3N-02379 LUAD WXS blood_normal CPT0146610002 CPT0146610002.WholeExome.RP-1303.bam 24512467702 BAM submitted_aligned CPTAC3 f68d90cb-c58d-445a-9da6-a350213bc0f6 0e75df564625d7cdcb54461dc9ba79bd {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02379.WXS.N.hg38 C3N-02379 LUAD WXS blood_normal CPT0146610002 65f832db-5d04-48a3-b292-b4554eadc912_wxs_gdc_realn.bam 33604778149 BAM harmonized CPTAC3 e9b15b60-d348-4859-aa58-7a0ca91efc65 2d1a5d5a796bcfa5098de354c944d8d8 {"aliquot_tag": "ALQ_ed11dbcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02379.WXS.T C3N-02379 LUAD WXS tumor CPT0146580010 CPT0146580010.WholeExome.RP-1303.bam 26004150764 BAM submitted_aligned CPTAC3 153ed475-0913-49f8-90da-1841cb05c5e5 e2f10724390bb77de42fcf96aa3c9455 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02379.WXS.T.hg38 C3N-02379 LUAD WXS tumor CPT0146580010 41acd1fe-34cc-4b28-8c65-2604cbd849f6_wxs_gdc_realn.bam 35139921952 BAM harmonized CPTAC3 baf146e2-0088-4cc6-80db-1e2e364d6800 d7e6f823bf1434faa29dbb2723750c40 {"aliquot_tag": "ALQ_91809b7d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.MethArray.Green.A C3N-02380 LUAD Methylation_Array tissue_normal CPT0146700009 203219640102_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0178389c-532f-4090-a881-d6669e744ea2 523809672b76b0f6dbfdf2c6794b3655 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.MethArray.Green.T C3N-02380 LUAD Methylation_Array tumor CPT0146680010 203219640102_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3ece5160-a864-4d95-8340-c2bfeab238d0 958d451bcd310eac52d6097ac808542a {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.MethArray.Red.A C3N-02380 LUAD Methylation_Array tissue_normal CPT0146700009 203219640102_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 54c21910-7a6d-4f04-9685-1b6e0e83c56f 8fc76f7ef4d8e96edd5426e0f2bcf320 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.MethArray.Red.T C3N-02380 LUAD Methylation_Array tumor CPT0146680010 203219640102_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 38b6a66c-4bd6-4dbe-9c60-1eb1f6054154 3f3eb221a2cb36260ca0b89d8583ba3b {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.miRNA-Seq.A.hg38 C3N-02380 LUAD miRNA-Seq tissue_normal CPT0146700006 22de3820-beac-42fe-aa36-99c3a607c371_mirnaseq_gdc_realn.bam 228296094 BAM harmonized CPTAC3 2d4a6e59-233d-44c5-ab12-8d97f07c040a 66c7d341c98f8c1fb49100b6b02b96b2 {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.miRNA-Seq.S11_L003_R1.T C3N-02380 LUAD miRNA-Seq tumor CPT0146680007 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L003_R1_001.unaln.bam 224945153 BAM S11_L003_R1 submitted_unaligned CPTAC3 e8b5ff15-dfd0-444f-90a7-0d31ee5014c9 b8cd98324dfac42b49c09ccf2ecb36f2 {"aliquot_tag": "ALQ_906b4d31", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.miRNA-Seq.S25_L002_R1.A C3N-02380 LUAD miRNA-Seq tissue_normal CPT0146700006 181108_UNC31-K00269_0162_AH255GBBXY_ATCACG_S25_L002_R1_001.unaln.bam 202433919 BAM S25_L002_R1 submitted_unaligned CPTAC3 15709e7e-5f8a-439f-b997-83c54c1d3287 47890a72a251f136dab008ca0c318088 {"aliquot_tag": "ALQ_1c40e5c3", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.miRNA-Seq.T.hg38 C3N-02380 LUAD miRNA-Seq tumor CPT0146680007 cf91c2b0-399e-4113-8434-591d79734509_mirnaseq_gdc_realn.bam 245376478 BAM harmonized CPTAC3 946a7e98-33c1-4c8b-96d6-7c1e7a250fd4 78e71b03e14249dbfbbf2a41ae180756 {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.RNA-Seq.chimeric.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.chimeric.gdc_realn.bam 40430403 BAM chimeric harmonized CPTAC3 867885db-cf7f-4bc7-8202-baebe89753b5 1c2506b194db6de1297f6adcc622f419 {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.RNA-Seq.chimeric.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.chimeric.gdc_realn.bam 111940351 BAM chimeric harmonized CPTAC3 623ebf72-fbbf-4448-a045-62376c818b9e 8c68061941119f28da43d08acef50cbd {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.RNA-Seq.genomic.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.genomic.gdc_realn.bam 7434342914 BAM genomic harmonized CPTAC3 ec1240ee-9a7e-468b-9e6f-9095765f1b64 b5af2f6f50aa5d9e0f039d6b633f70bb {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.RNA-Seq.genomic.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.genomic.gdc_realn.bam 9661045949 BAM genomic harmonized CPTAC3 038184d8-71a9-4808-bdef-a177f3649d25 b6fcb5e78c151d87dc916c4401dac60c {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.RNA-Seq.S20_L005_R1.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3534442210 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 88726cfe-6ed5-45a1-b154-26910cf7dd1a d2efe5adfbd17e59af421aacf803ecce {"aliquot_tag": "ALQ_1c40e5c3", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.RNA-Seq.S20_L005_R2.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R2_001.fastq.gz 3565209807 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 c56bba94-989f-42f1-837b-27fbc10864cb b36fabc09e01845cd8758398be05c15a {"aliquot_tag": "ALQ_1c40e5c3", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.RNA-Seq.S6_L008_R1.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R1_001.fastq.gz 4001677751 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 9e27348c-6ff2-4e76-9749-fb2cb7322136 15e91ae7fb43b331fe85d4e949ebb0dd {"aliquot_tag": "ALQ_906b4d31", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.RNA-Seq.S6_L008_R2.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R2_001.fastq.gz 4538250920 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 31a19dfa-bc63-4f29-9768-1881ff09d7be 72004073d69a4a3319dff2b68deaa142 {"aliquot_tag": "ALQ_906b4d31", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.RNA-Seq.transcriptome.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.transcriptome.gdc_realn.bam 8503647780 BAM transcriptome harmonized CPTAC3 d496ed16-fae6-4806-8bab-c39dca323d15 37cad7d4f2a96bf085ff53183af7b1d9 {"aliquot_tag": "ALQ_1c40e5c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.RNA-Seq.transcriptome.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.transcriptome.gdc_realn.bam 9609218443 BAM transcriptome harmonized CPTAC3 448fc971-cd71-4acf-8c63-94b21f5ed11b 5988b6cff045f97c058549f83c101347 {"aliquot_tag": "ALQ_906b4d31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.WGS.A C3N-02380 LUAD WGS tissue_normal CPT0146700009 CPT0146700009.WholeGenome.RP-1303.bam 56730058746 BAM submitted_aligned CPTAC3 06cda296-b181-439d-a8f9-043a1a64db0f d0089be448eda58b3e53fd53317791ff {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.WGS.A.hg38 C3N-02380 LUAD WGS tissue_normal CPT0146700009 9e8b489f-b11f-4dbf-9a2e-ca4d841fd750_wgs_gdc_realn.bam 81901208240 BAM harmonized CPTAC3 70c15ed3-a186-4bd9-8892-1be6d382f478 7110055d54b9dacea6fd5f984488cf43 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.WGS.N C3N-02380 LUAD WGS blood_normal CPT0146710002 CPT0146710002.WholeGenome.RP-1303.bam 56430050706 BAM submitted_aligned CPTAC3 b827f9fc-9b84-466f-9db3-f75cf9c3ad83 98e39b6a8842ff3fcfd8d3f25a34ce53 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02380.WGS.N.hg38 C3N-02380 LUAD WGS blood_normal CPT0146710002 c3e4b231-2012-4de9-a469-b311f2a98f6e_wgs_gdc_realn.bam 83244421319 BAM harmonized CPTAC3 330da8c0-e1a7-4100-93af-fac1e1fec3e6 9d6930e43dd6b394fc58d049be8dee55 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02380.WGS.T C3N-02380 LUAD WGS tumor CPT0146680010 CPT0146680010.WholeGenome.RP-1303.bam 59531235775 BAM submitted_aligned CPTAC3 0b82f43a-21a2-426f-ab2c-8328f4f9f21c f56332e52f3f07c44a344d01e3d53687 {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.WGS.T.hg38 C3N-02380 LUAD WGS tumor CPT0146680010 51b40096-00ec-4257-8bcd-95677769074c_wgs_gdc_realn.bam 86959994000 BAM harmonized CPTAC3 c741d4be-78e3-4aed-924c-e62b5cdda94e 26f0e58265687d088818f19d7ef7f7b8 {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.WXS.A C3N-02380 LUAD WXS tissue_normal CPT0146700009 CPT0146700009.WholeExome.RP-1303.bam 26703453894 BAM submitted_aligned CPTAC3 22b92ac7-80eb-44d4-9646-3ce10ef62543 7c6ca273ff64bc5ff45e6873579102bc {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.WXS.A.hg38 C3N-02380 LUAD WXS tissue_normal CPT0146700009 9e8b489f-b11f-4dbf-9a2e-ca4d841fd750_wxs_gdc_realn.bam 36399537728 BAM harmonized CPTAC3 234a847e-eebb-4eb7-9d25-1e76e2fe64fa fb927b2690f7da378c9c2f9ef8c4b628 {"aliquot_tag": "ALQ_8cfff852", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02380.WXS.N C3N-02380 LUAD WXS blood_normal CPT0146710002 CPT0146710002.WholeExome.RP-1303.bam 27501266102 BAM submitted_aligned CPTAC3 ed1a658e-5907-4d03-89a5-a3c5bdbeb648 1df95df5b6f64d179970bffdfc4b1ed4 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02380.WXS.N.hg38 C3N-02380 LUAD WXS blood_normal CPT0146710002 c3e4b231-2012-4de9-a469-b311f2a98f6e_wxs_gdc_realn.bam 37538702354 BAM harmonized CPTAC3 c5887726-96d2-4f3c-aec1-c2535f1deb8a b9d53a311eaf02bbb2b824cf282889d4 {"aliquot_tag": "ALQ_264d086a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02380.WXS.T C3N-02380 LUAD WXS tumor CPT0146680010 CPT0146680010.WholeExome.RP-1303.bam 24870589841 BAM submitted_aligned CPTAC3 5c502c8f-683c-411f-beac-36231c4cc847 a4685744dc24803246ef04b2504ed56e {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02380.WXS.T.hg38 C3N-02380 LUAD WXS tumor CPT0146680010 51b40096-00ec-4257-8bcd-95677769074c_wxs_gdc_realn.bam 34287622206 BAM harmonized CPTAC3 0e7fdf34-60d9-4f8c-adbd-ccb40ae73e7b cdc7dc553add86a5c7863b0b9875de15 {"aliquot_tag": "ALQ_1714e9d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.MethArray.Green.A C3N-02421 LUAD Methylation_Array tissue_normal CPT0146800009 203271740111_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 761b3532-5ca8-4879-8611-c584e0795ca3 033477c5823ce3884ff139cd3dcd31d5 {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.MethArray.Green.T C3N-02421 LUAD Methylation_Array tumor CPT0146780010 203219650221_R03C01_Grn.idat 13676217 IDAT Green NA CPTAC3 d23a3a8c-96ac-4ee9-aea7-43932f74526a 7414850fba3fae6c1f8471683726b96d {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.MethArray.Red.A C3N-02421 LUAD Methylation_Array tissue_normal CPT0146800009 203271740111_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 fa1d0b58-dcbe-40aa-b48d-6ca07f8facf4 5a4813480c21da152e767990941b1a7c {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.MethArray.Red.T C3N-02421 LUAD Methylation_Array tumor CPT0146780010 203219650221_R03C01_Red.idat 13676217 IDAT Red NA CPTAC3 35b7b9a3-cc03-4062-994f-5be2c199898c b6011625113c3d0fbd290d8d07408d1a {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.miRNA-Seq.A.hg38 C3N-02421 LUAD miRNA-Seq tissue_normal CPT0146800006 3de035a5-6825-478c-8656-623997ec45ef_mirnaseq_gdc_realn.bam 286361145 BAM harmonized CPTAC3 dac8e778-17c7-4728-8397-326e1d596ecf 8054c70a5abe08256208fc89a46d00ec {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.miRNA-Seq.S12_L003_R1.T C3N-02421 LUAD miRNA-Seq tumor CPT0146780007 181108_UNC31-K00269_0162_AH255GBBXY_CCAACA_S12_L003_R1_001.unaln.bam 236531784 BAM S12_L003_R1 submitted_unaligned CPTAC3 d174447b-f91b-4edf-8780-75dc56b0e37c 31569decc118acfc97238fc567a78572 {"aliquot_tag": "ALQ_5b379e94", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.miRNA-Seq.S26_L002_R1.A C3N-02421 LUAD miRNA-Seq tissue_normal CPT0146800006 181108_UNC31-K00269_0162_AH255GBBXY_CGATGT_S26_L002_R1_001.unaln.bam 256571779 BAM S26_L002_R1 submitted_unaligned CPTAC3 09549adc-6d06-4dca-a79b-8748c77d302d 429273eea3562633f0cc648f9c7c5204 {"aliquot_tag": "ALQ_ed165716", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.miRNA-Seq.T.hg38 C3N-02421 LUAD miRNA-Seq tumor CPT0146780007 def3054e-0c78-4bc3-9408-d953d55afd72_mirnaseq_gdc_realn.bam 262387065 BAM harmonized CPTAC3 78e56c5a-ab97-46f0-b12a-774439545ed9 fd174ec3e41c29a1a58c363bfa61d5ac {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.RNA-Seq.chimeric.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.chimeric.gdc_realn.bam 161351414 BAM chimeric harmonized CPTAC3 940ba12f-43e6-4ba8-983a-fe9cccb8b7f2 497346069c1900f1a81409f9dc72cf93 {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.RNA-Seq.chimeric.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.chimeric.gdc_realn.bam 56379147 BAM chimeric harmonized CPTAC3 b373facd-9ca0-4692-a95a-aedf58609e51 d5ec5ee02935f5b86be4a2804605b0d4 {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.RNA-Seq.genomic.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.genomic.gdc_realn.bam 10822918633 BAM genomic harmonized CPTAC3 b61066ce-d956-4ce4-a753-a16ca2ec7326 d8e27c0d25a025fa5cf3afb7259e0676 {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.RNA-Seq.genomic.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.genomic.gdc_realn.bam 8271537887 BAM genomic harmonized CPTAC3 7a83c36f-0189-4a75-9fa8-9b512432ce5e 529c0c665d52e8ef7900cd7b5eb856ce {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.RNA-Seq.S15_L004_R1.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R1_001.fastq.gz 5090698736 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 cca0b611-f53e-41c5-b1f2-5e0c562592d9 7a179cc4a07c21c8e4ee0ba6455f407d {"aliquot_tag": "ALQ_ed165716", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.RNA-Seq.S15_L004_R2.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R2_001.fastq.gz 5600672055 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 dd03f2a9-0abb-40c1-bb0e-e883675522bc fadf4e2a77608c630342b14cde3dba76 {"aliquot_tag": "ALQ_ed165716", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.RNA-Seq.S8_L008_R1.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R1_001.fastq.gz 3884046169 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 454aea97-0497-450c-b5bc-194cd9c4bcf2 3eaa0c69181d6817974eb3a454aa4783 {"aliquot_tag": "ALQ_5b379e94", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.RNA-Seq.S8_L008_R2.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R2_001.fastq.gz 4194831572 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 3ec298f3-2bc0-470f-b207-8ea04963659b 5c63d90a36cb87aca622dd4ebd3cfee5 {"aliquot_tag": "ALQ_5b379e94", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.RNA-Seq.transcriptome.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.transcriptome.gdc_realn.bam 12707960432 BAM transcriptome harmonized CPTAC3 3e41f52e-2d52-459d-9a9b-2f83da9e2ea8 b56532322c9f3689b1b8df225cdd38a1 {"aliquot_tag": "ALQ_ed165716", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.RNA-Seq.transcriptome.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.transcriptome.gdc_realn.bam 9688638603 BAM transcriptome harmonized CPTAC3 320c0459-4afd-4309-9dea-6476c8133e46 ffbea8c9f1c2957bdfed839ba7a6d22a {"aliquot_tag": "ALQ_5b379e94", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.WGS.A C3N-02421 LUAD WGS tissue_normal CPT0146800009 CPT0146800009.WholeGenome.RP-1303.bam 64151727026 BAM submitted_aligned CPTAC3 1282e4d4-610a-45ab-98e5-b8a71940d02e ab8b12680ed6730a58158b929ad2711b {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.WGS.A.hg38 C3N-02421 LUAD WGS tissue_normal CPT0146800009 4bbfd03b-ef99-4bba-aa9c-35a6e3286f4f_wgs_gdc_realn.bam 93704759641 BAM harmonized CPTAC3 0b8f35e0-73b4-41b2-9a72-3b7256ed21dc 7f3169ded0f29a6784e31d729395c9ef {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.WGS.N C3N-02421 LUAD WGS blood_normal CPT0146810002 CPT0146810002.WholeGenome.RP-1303.bam 54883826989 BAM submitted_aligned CPTAC3 091ed012-5259-4a22-bfed-c3861fe5b27f 53ba5ec11fd09e9a51a1e3b65a75b7b8 {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02421.WGS.N.hg38 C3N-02421 LUAD WGS blood_normal CPT0146810002 17bcd148-f1d4-4761-9af2-57a8d9604f34_wgs_gdc_realn.bam 79436881650 BAM harmonized CPTAC3 ec50023b-7ce4-4c19-9689-b8397d5bc8be 3ee76b66ffdb816a78486c233fd20a71 {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02421.WGS.T C3N-02421 LUAD WGS tumor CPT0146780010 CPT0146780010.WholeGenome.RP-1303.bam 60913503854 BAM submitted_aligned CPTAC3 cfab85a0-2b99-4706-95e6-56dcd6065d19 e72f1fc35188b3b60a2e7d5929ddddb5 {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.WGS.T.hg38 C3N-02421 LUAD WGS tumor CPT0146780010 df52656d-be0f-4c33-ab21-c0683e4a0b72_wgs_gdc_realn.bam 88306142565 BAM harmonized CPTAC3 9816531d-dc04-489a-944d-50ff7ecaf1a0 762d808c59fd9268419a10e035c4be8d {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.WXS.A C3N-02421 LUAD WXS tissue_normal CPT0146800009 CPT0146800009.WholeExome.RP-1303.bam 41777534229 BAM submitted_aligned CPTAC3 95e0c109-3be4-4e15-be77-82e49176437d dfc6da1bc4fa68f710cc749f20c87bf5 {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.WXS.A.hg38 C3N-02421 LUAD WXS tissue_normal CPT0146800009 4bbfd03b-ef99-4bba-aa9c-35a6e3286f4f_wxs_gdc_realn.bam 57520713316 BAM harmonized CPTAC3 9c6f243f-a285-472b-bba1-a46523b083d0 9bf50b81ffe8de1c4bebe846bf0d5360 {"aliquot_tag": "ALQ_7da94a87", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02421.WXS.N C3N-02421 LUAD WXS blood_normal CPT0146810002 CPT0146810002.WholeExome.RP-1303.bam 20622612680 BAM submitted_aligned CPTAC3 23079701-a6cc-4c84-8111-2f52d1f5d8eb afa25e5a225b255a4cc5162d8763fab3 {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02421.WXS.N.hg38 C3N-02421 LUAD WXS blood_normal CPT0146810002 17bcd148-f1d4-4761-9af2-57a8d9604f34_wxs_gdc_realn.bam 27618331808 BAM harmonized CPTAC3 3e46b1e7-a2ee-4c65-9faf-8e219993da80 bead648df62f4345e3333b219305970e {"aliquot_tag": "ALQ_d71bbabf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02421.WXS.T C3N-02421 LUAD WXS tumor CPT0146780010 CPT0146780010.WholeExome.RP-1303.bam 23269510177 BAM submitted_aligned CPTAC3 0b53057b-82b7-46de-b00b-be7919dd4de6 f31d550869405cebaef4677eddb7a8b6 {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02421.WXS.T.hg38 C3N-02421 LUAD WXS tumor CPT0146780010 df52656d-be0f-4c33-ab21-c0683e4a0b72_wxs_gdc_realn.bam 31571843073 BAM harmonized CPTAC3 743f1aa5-0b98-4836-b9f0-a76b7525d1af 6e564785b71fec414dfb4ab7d1abdaf1 {"aliquot_tag": "ALQ_dc483a76", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.MethArray.Green.T C3N-02422 LUAD Methylation_Array tumor CPT0146880010 203219720176_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 08a4df8e-8407-4916-9b5b-6f57766c466e 2c9f8d1fc384027fd29c684422948319 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.MethArray.Red.T C3N-02422 LUAD Methylation_Array tumor CPT0146880010 203219720176_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 04a22d7f-2648-4a0b-a340-0ea635cc8d7d e20ed1f98daac275717106c73a705b55 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.miRNA-Seq.S13_L003_R1.T C3N-02422 LUAD miRNA-Seq tumor CPT0146880007 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L003_R1_001.unaln.bam 287838469 BAM S13_L003_R1 submitted_unaligned CPTAC3 88a4ef9e-2857-4fa4-b1ca-430b4288791d 9970a1804bae88cba53ac06f3b594d34 {"aliquot_tag": "ALQ_aa612c41", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.miRNA-Seq.T.hg38 C3N-02422 LUAD miRNA-Seq tumor CPT0146880007 cdbee926-9a4d-4c0d-8a01-89005a32b6be_mirnaseq_gdc_realn.bam 315524344 BAM harmonized CPTAC3 73125572-e567-46bb-9fd8-47a30375eb96 f108aa6f09584d545ecdb1fc6cd0e961 {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.RNA-Seq.chimeric.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.chimeric.gdc_realn.bam 42440802 BAM chimeric harmonized CPTAC3 ce282f7d-9298-48da-b378-a79d1ff3474b a76d8ebb7d5b9ad66356142d515b351f {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.RNA-Seq.genomic.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.genomic.gdc_realn.bam 7358416711 BAM genomic harmonized CPTAC3 a6b42b3a-0ccc-480c-9c6f-b8ccd4722bdd bfe53be42fe6ef774c1356e159268f56 {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.RNA-Seq.S7_L008_R1.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R1_001.fastq.gz 3308540565 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 147fb7cf-44ef-4499-96d7-54f30d6d6562 4f96558cfe2927590d8a425faa41037e {"aliquot_tag": "ALQ_aa612c41", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.RNA-Seq.S7_L008_R2.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R2_001.fastq.gz 3640360440 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 8cd424a4-9961-483b-9147-514293b54155 1c06c65dc5d873c89560179d05eb97e7 {"aliquot_tag": "ALQ_aa612c41", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.RNA-Seq.transcriptome.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.transcriptome.gdc_realn.bam 8488543674 BAM transcriptome harmonized CPTAC3 d63c5e1e-80d9-46b8-81df-3320f5b6c058 5e4a533ac3d87d72bb4d9b3310bbd079 {"aliquot_tag": "ALQ_aa612c41", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.WGS.N C3N-02422 LUAD WGS blood_normal CPT0146910002 CPT0146910002.WholeGenome.RP-1303.bam 58280953535 BAM submitted_aligned CPTAC3 05c86947-3dd1-4456-b6e5-3fd973d00d3e a63d235d670e2ccc718c36058674168c {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02422.WGS.N.hg38 C3N-02422 LUAD WGS blood_normal CPT0146910002 992af5b1-11e4-4fa6-9893-e1f5b46f1855_wgs_gdc_realn.bam 85418823367 BAM harmonized CPTAC3 553a682a-ab16-40b5-a63c-663fd2b8a652 788214eb18013c19208165a4b36ed360 {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02422.WGS.T C3N-02422 LUAD WGS tumor CPT0146880010 CPT0146880010.WholeGenome.RP-1303.bam 57812331919 BAM submitted_aligned CPTAC3 684d84fb-e382-4d8f-878b-93e398435c1b 4679d51e48946dd43ff5cc79c1ff0890 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.WGS.T.hg38 C3N-02422 LUAD WGS tumor CPT0146880010 cbc0b258-c4ca-422e-92cf-764929637731_wgs_gdc_realn.bam 86014339255 BAM harmonized CPTAC3 6e6e6eef-1408-4cfc-a71a-7cb0505c808a 167a6bd57a7a6d58e7fa6d9a7259acab {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.WXS.N C3N-02422 LUAD WXS blood_normal CPT0146910002 CPT0146910002.WholeExome.RP-1303.bam 25794086650 BAM submitted_aligned CPTAC3 8469ebc6-a325-41a0-89f0-fbe4f25b7a19 76effef074d64c773c94678e7cfdd22a {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02422.WXS.N.hg38 C3N-02422 LUAD WXS blood_normal CPT0146910002 992af5b1-11e4-4fa6-9893-e1f5b46f1855_wxs_gdc_realn.bam 35017763835 BAM harmonized CPTAC3 c2a5c0aa-f145-489d-ba4e-4988c9f362d6 d903e29362652ff28fe06f83555ccdc0 {"aliquot_tag": "ALQ_1c47691a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02422.WXS.T C3N-02422 LUAD WXS tumor CPT0146880010 CPT0146880010.WholeExome.RP-1303.bam 23791819213 BAM submitted_aligned CPTAC3 9054913e-6c1d-48b1-8c9f-5d84a17062ba 55e95c5485e3a580a7e7e06ab2ce67c5 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02422.WXS.T.hg38 C3N-02422 LUAD WXS tumor CPT0146880010 cbc0b258-c4ca-422e-92cf-764929637731_wxs_gdc_realn.bam 33066135267 BAM harmonized CPTAC3 b42b5652-41e3-4a3a-96db-900de3e9e466 e2844e37dbdadb53a5f17e8917b10fe1 {"aliquot_tag": "ALQ_2d1e88a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.MethArray.Green.A C3N-02423 LUAD Methylation_Array tissue_normal CPT0147000009 203219650006_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 7ef9470e-ed89-461e-9a1f-ce49b62d14db e503c64394d9a4f1b9e633ddb6579d63 {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.MethArray.Green.T C3N-02423 LUAD Methylation_Array tumor CPT0146980010 203028200048_R08C01_Grn.idat 13676232 IDAT Green NA CPTAC3 0623396d-b60c-43c2-af53-7d8f63669b7f 2a86ec7abfd213537a1f0dab0e7d726b {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.MethArray.Red.A C3N-02423 LUAD Methylation_Array tissue_normal CPT0147000009 203219650006_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 33c7f2a5-faf2-4b4c-b743-79332213159d a057d0fea4b618e0882c13c4522e7d1f {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.MethArray.Red.T C3N-02423 LUAD Methylation_Array tumor CPT0146980010 203028200048_R08C01_Red.idat 13676232 IDAT Red NA CPTAC3 631a18e9-2257-4a82-923a-8a9001b9469c 3634e84ad9a4ec6f2cc40e7b86a4f56c {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.miRNA-Seq.A.hg38 C3N-02423 LUAD miRNA-Seq tissue_normal CPT0147000006 62ee43af-abc0-4810-8805-ea602d966c75_mirnaseq_gdc_realn.bam 232199116 BAM harmonized CPTAC3 0c7a391b-7387-4288-bb96-662bf79bf678 333553a4f3632ed0829da4a0cab73011 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.miRNA-Seq.S14_L003_R1.T C3N-02423 LUAD miRNA-Seq tumor CPT0146980007 181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L003_R1_001.unaln.bam 251750089 BAM S14_L003_R1 submitted_unaligned CPTAC3 d61ab204-950a-4aa9-a121-66078d818c25 48f01340dcb19fc2321ad1cb29ba5f5d {"aliquot_tag": "ALQ_613dffe4", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.miRNA-Seq.S27_L002_R1.A C3N-02423 LUAD miRNA-Seq tissue_normal CPT0147000006 181108_UNC31-K00269_0162_AH255GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 205900991 BAM S27_L002_R1 submitted_unaligned CPTAC3 342c80b4-b3cf-4c10-a385-b718934843f3 f6d070c3c917a12540c91d4999bed183 {"aliquot_tag": "ALQ_a732decf", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.miRNA-Seq.T.hg38 C3N-02423 LUAD miRNA-Seq tumor CPT0146980007 5c98ae24-4d99-46d4-8d65-b792a68e34a5_mirnaseq_gdc_realn.bam 269087814 BAM harmonized CPTAC3 f5c44cac-cae8-4745-82a6-7426b5ba469a 9f8d8690e58501e0dabf521d8d343ab3 {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.RNA-Seq.chimeric.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.chimeric.gdc_realn.bam 136152932 BAM chimeric harmonized CPTAC3 33de3779-597b-4607-ac86-262a932938cd 01611bcae5f5dc97205c416fb5f93487 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.RNA-Seq.chimeric.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.chimeric.gdc_realn.bam 64247233 BAM chimeric harmonized CPTAC3 1d774325-34fa-4623-89cf-1a8db2e78f78 3615d2c4c9fcbff47f380db72e9b80d3 {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.RNA-Seq.genomic.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.genomic.gdc_realn.bam 8686773264 BAM genomic harmonized CPTAC3 f1b25e7d-dc8b-4fb6-a168-3124d31bd35c d2d3426a3509393c44c3e48ea10d9f16 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.RNA-Seq.genomic.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.genomic.gdc_realn.bam 8666348471 BAM genomic harmonized CPTAC3 84de0d9a-8b4b-40a5-850e-037e6ebf5082 a1acf9512e3347cfd98aff0fb15522ab {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.RNA-Seq.S14_L004_R1.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 3989790171 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 a4c506c9-e1a9-4c69-99bf-3f9c1c8bb042 a05eec00b00ca57bdbc3c12ae02e7df2 {"aliquot_tag": "ALQ_a732decf", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.RNA-Seq.S14_L004_R2.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4422225843 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 694fe6fe-7c01-4060-8626-b01c73ed3a7a 19cf188165100f07bbb6769b5a1430e8 {"aliquot_tag": "ALQ_a732decf", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.RNA-Seq.S3_L007_R1.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R1_001.fastq.gz 4010210061 FASTQ S3_L007_R1 submitted_unaligned CPTAC3 4fd065e7-2b2a-48ec-a342-c2dd97a38e9f a22449027e8f90d08fc2ff4454236703 {"aliquot_tag": "ALQ_613dffe4", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.RNA-Seq.S3_L007_R2.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R2_001.fastq.gz 4258304420 FASTQ S3_L007_R2 submitted_unaligned CPTAC3 70f8ae40-6313-4b6b-9a03-c709f96d1ee2 ceffa5459ffee7022547337309fb1037 {"aliquot_tag": "ALQ_613dffe4", "sample": "S3", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.RNA-Seq.transcriptome.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.transcriptome.gdc_realn.bam 9245671347 BAM transcriptome harmonized CPTAC3 7dc88d9c-e8d8-452d-9932-180e77589b1a 41dda30dc09680008ef9ff8d9cd5bcc0 {"aliquot_tag": "ALQ_a732decf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.RNA-Seq.transcriptome.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.transcriptome.gdc_realn.bam 10101956587 BAM transcriptome harmonized CPTAC3 7b14152b-3924-4ff1-acb1-71f98ac899d2 52c10e007982c4273d9a6454567727f4 {"aliquot_tag": "ALQ_613dffe4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.WGS.A C3N-02423 LUAD WGS tissue_normal CPT0147000009 CPT0147000009.WholeGenome.RP-1303.bam 72711987230 BAM submitted_aligned CPTAC3 966c074c-90dc-4ec0-ad90-ebcb9e6fb174 8f9d173fbc3464b76975e43d4bee49c9 {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.WGS.A.hg38 C3N-02423 LUAD WGS tissue_normal CPT0147000009 ab6eb7aa-5447-4e8a-89fd-c608b23c46c1_wgs_gdc_realn.bam 107574015918 BAM harmonized CPTAC3 2be5cad7-883c-4fe7-932c-a0ac809e1ba8 4895e355be4130cd754434af867eec5e {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.WGS.N C3N-02423 LUAD WGS blood_normal CPT0147010002 CPT0147010002.WholeGenome.RP-1303.bam 63627477024 BAM submitted_aligned CPTAC3 8d672e43-51ce-44b6-9665-04593b75f600 2a725128ff0d873a770a31ef3d4eeb71 {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02423.WGS.N.hg38 C3N-02423 LUAD WGS blood_normal CPT0147010002 8a50eabb-8cb9-48fd-875a-f83ae14a0f3a_wgs_gdc_realn.bam 93560628391 BAM harmonized CPTAC3 1f8046db-25cb-4977-940b-49d90026fe74 3aec6d98e3ffd44683d5b1ae107b4e8b {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02423.WGS.T C3N-02423 LUAD WGS tumor CPT0146980010 CPT0146980010.WholeGenome.RP-1303.bam 63861741260 BAM submitted_aligned CPTAC3 7ba00f9d-67d8-4c8f-94e7-ceb30aaabf1e a6acda918f328ecec3281a4a611dcb05 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.WGS.T.hg38 C3N-02423 LUAD WGS tumor CPT0146980010 274ceeb7-b7b7-4b02-be3f-38a503721389_wgs_gdc_realn.bam 94413566057 BAM harmonized CPTAC3 8e9d0e55-0b50-419f-af7f-c39878d61184 291dd50828fb08cb21abbf5a6b20b075 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.WXS.A C3N-02423 LUAD WXS tissue_normal CPT0147000009 CPT0147000009.WholeExome.RP-1303.bam 48018296557 BAM submitted_aligned CPTAC3 04ad925b-53f4-47ae-884a-08d728535089 321bc33593f3bc0d00df91a8289cd8b0 {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.WXS.A.hg38 C3N-02423 LUAD WXS tissue_normal CPT0147000009 ab6eb7aa-5447-4e8a-89fd-c608b23c46c1_wxs_gdc_realn.bam 66166826481 BAM harmonized CPTAC3 0e1def47-9169-41bd-9387-2cecbb61e66a 1ac331eb00c8153c75766516ae65406b {"aliquot_tag": "ALQ_378dc35e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02423.WXS.N C3N-02423 LUAD WXS blood_normal CPT0147010002 CPT0147010002.WholeExome.RP-1303.bam 28202253855 BAM submitted_aligned CPTAC3 55a8234f-f14d-41c9-8210-56e1a02bce59 8c1f41b777a32c5fccaa88496c1a78dc {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02423.WXS.N.hg38 C3N-02423 LUAD WXS blood_normal CPT0147010002 8a50eabb-8cb9-48fd-875a-f83ae14a0f3a_wxs_gdc_realn.bam 38432990320 BAM harmonized CPTAC3 a5d7bd93-5120-4c07-a22b-4da7663ba9c6 520aa54539f3754ba9008163b4f64fd1 {"aliquot_tag": "ALQ_9d3f3366", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02423.WXS.T C3N-02423 LUAD WXS tumor CPT0146980010 CPT0146980010.WholeExome.RP-1303.bam 25397466159 BAM submitted_aligned CPTAC3 6f7291e7-d786-4237-9182-d57298b0c81b 12a47d0cce56575a155123af2c4cb8f7 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02423.WXS.T.hg38 C3N-02423 LUAD WXS tumor CPT0146980010 274ceeb7-b7b7-4b02-be3f-38a503721389_wxs_gdc_realn.bam 33976030240 BAM harmonized CPTAC3 dce3d113-f350-4898-89b4-4b5b74cafcfd d1012882c66e7fae65e38ebab0053bb3 {"aliquot_tag": "ALQ_e6425b06", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.MethArray.Green.A C3N-02424 LUAD Methylation_Array tissue_normal CPT0147100009 203219650164_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 24a5af96-c06d-47b8-a06c-2ff4b254b89a ebfdb020082ad0d1da761ee378d031eb {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.MethArray.Green.T C3N-02424 LUAD Methylation_Array tumor CPT0147080010 203219640157_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0ca37125-a9d6-40ba-a007-83823f008683 5b9b93ec312f9557c5d79b2359660aed {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.MethArray.Red.A C3N-02424 LUAD Methylation_Array tissue_normal CPT0147100009 203219650164_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 ec924456-31e3-4eba-a3f8-2fd3f3733be1 6e7c7bb77ddffd9aaf73ac2d2016082a {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.MethArray.Red.T C3N-02424 LUAD Methylation_Array tumor CPT0147080010 203219640157_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 97a01e78-66ea-4153-aece-b4d9ff93447b e02c397565d8218c85f00372e5c9e58d {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.miRNA-Seq.A.hg38 C3N-02424 LUAD miRNA-Seq tissue_normal CPT0147100006 953cf486-db1c-4156-b485-df2046bb7507_mirnaseq_gdc_realn.bam 241739142 BAM harmonized CPTAC3 9d603494-7bf0-4964-b888-9f32fc4b9df7 69875b8f0e09b2331ae472d7db41e181 {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.miRNA-Seq.S15_L003_R1.T C3N-02424 LUAD miRNA-Seq tumor CPT0147080007 181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L003_R1_001.unaln.bam 168652527 BAM S15_L003_R1 submitted_unaligned CPTAC3 4be6eb61-9c21-4607-8c33-4d648aeefb0d 6dfc0f8306d612f4dea304275f727215 {"aliquot_tag": "ALQ_e045a598", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.miRNA-Seq.S28_L002_R1.A C3N-02424 LUAD miRNA-Seq tissue_normal CPT0147100006 181108_UNC31-K00269_0162_AH255GBBXY_TGACCA_S28_L002_R1_001.unaln.bam 219425060 BAM S28_L002_R1 submitted_unaligned CPTAC3 43bf490a-b9c0-40ca-80af-bedbe41e7507 849969c89a81f08e1e06402bc1b7d032 {"aliquot_tag": "ALQ_6c6e0d6a", "sample": "S28", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.miRNA-Seq.T.hg38 C3N-02424 LUAD miRNA-Seq tumor CPT0147080007 175c75d1-2da5-4a65-9c99-eb2e4d51932f_mirnaseq_gdc_realn.bam 188451747 BAM harmonized CPTAC3 8c4cc77a-e252-400d-a38b-ac3645b25224 cca5ff6723e77be924285af3ea9797ce {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.RNA-Seq.chimeric.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.chimeric.gdc_realn.bam 98157424 BAM chimeric harmonized CPTAC3 994c9024-e46a-49a5-a772-18ca96116323 de423bfdef6b14d7a144fde3dd19d0db {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.RNA-Seq.chimeric.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.chimeric.gdc_realn.bam 36911713 BAM chimeric harmonized CPTAC3 257e3c39-ae52-436d-8e82-d59a36c163d0 ca5d1a1bc2c65b9d48d5f8ca012d3cf2 {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.RNA-Seq.genomic.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.genomic.gdc_realn.bam 8254351882 BAM genomic harmonized CPTAC3 102be50a-c187-42c2-b508-91997e667006 1e891ce070c84deffa0fa5f9016d81fd {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.RNA-Seq.genomic.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.genomic.gdc_realn.bam 8264822746 BAM genomic harmonized CPTAC3 8bf22877-329d-4247-a5f8-0792bd175323 6fd0cb1bb72682f68f3217db0b909833 {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.RNA-Seq.S13_L004_R1.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R1_001.fastq.gz 3700325671 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 fe53df08-c9b4-4018-b557-cfb79f8bb720 337f9cd962dba1e171eef9b001528f80 {"aliquot_tag": "ALQ_6c6e0d6a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.RNA-Seq.S13_L004_R2.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R2_001.fastq.gz 3993535232 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 11a9f07b-2e64-4980-ac70-b1f231e5bfe4 f0f8bfc84fd295a86cbec44073dfd598 {"aliquot_tag": "ALQ_6c6e0d6a", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.RNA-Seq.S2_L007_R1.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R1_001.fastq.gz 3391799240 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 b493e4f4-c695-4b57-949d-688a46a0cd38 aaa32199c7d8bd144c5d56d741517d62 {"aliquot_tag": "ALQ_e045a598", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.RNA-Seq.S2_L007_R2.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R2_001.fastq.gz 3638484505 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 7e6247d9-22e0-4d96-85e3-75a9931c5036 7c7da2649c940c6af7583f6e4e20b1c9 {"aliquot_tag": "ALQ_e045a598", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.RNA-Seq.transcriptome.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.transcriptome.gdc_realn.bam 9260803495 BAM transcriptome harmonized CPTAC3 8d42f9bb-231d-4091-ac43-779d2e56168c ceeb5500faab975a1d0521c2274c97f9 {"aliquot_tag": "ALQ_6c6e0d6a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.RNA-Seq.transcriptome.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.transcriptome.gdc_realn.bam 9327213882 BAM transcriptome harmonized CPTAC3 e53e1432-f3d3-47d4-bc97-ca27c3d72e36 5631ce1fade6f59c0186905eab4843a8 {"aliquot_tag": "ALQ_e045a598", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.WGS.A C3N-02424 LUAD WGS tissue_normal CPT0147100009 CPT0147100009.WholeGenome.RP-1303.bam 59401001682 BAM submitted_aligned CPTAC3 1f4559b3-6d3c-4424-a866-5612f43d53c0 c6340a6c5824de66705187c096331055 {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.WGS.A.hg38 C3N-02424 LUAD WGS tissue_normal CPT0147100009 67833e4f-0dc8-4ac0-8ce9-6ee52ecd2375_wgs_gdc_realn.bam 86954588180 BAM harmonized CPTAC3 5f6e383c-14dc-4b37-9caa-30b139270c79 ea95d0141a59dba0cfe5cffce409789a {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.WGS.N C3N-02424 LUAD WGS blood_normal CPT0147110002 CPT0147110002.WholeGenome.RP-1303.bam 56369439519 BAM submitted_aligned CPTAC3 8fa4a810-26d6-4a00-8dae-0f38f3a2a0a3 0d49e7bc54938a054f04263ab4487565 {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02424.WGS.N.hg38 C3N-02424 LUAD WGS blood_normal CPT0147110002 b4e53e9f-2917-4cae-b2c6-6feaa2594d37_wgs_gdc_realn.bam 82548105039 BAM harmonized CPTAC3 19e3ade5-44c5-4976-8f68-a2f41c39f6a4 9d770c9dbd0883590df694cfdfc5825a {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02424.WGS.T C3N-02424 LUAD WGS tumor CPT0147080010 CPT0147080010.WholeGenome.RP-1303.bam 54279413884 BAM submitted_aligned CPTAC3 939d4e38-97a0-4ac2-83e4-aa1b6b519786 366689d27a260f01d32971a238fc13cb {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.WGS.T.hg38 C3N-02424 LUAD WGS tumor CPT0147080010 8a378a0d-4f1b-434b-bb5d-1c58464508c7_wgs_gdc_realn.bam 78848854254 BAM harmonized CPTAC3 4d8143de-035d-4a5c-a107-8b941db9f8a8 448e53c4f24ffa0f5a5db436dc8d0016 {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.WXS.A C3N-02424 LUAD WXS tissue_normal CPT0147100009 CPT0147100009.WholeExome.RP-1303.bam 23447463982 BAM submitted_aligned CPTAC3 af7a67bb-737a-4d8c-8c0c-64ed0bbd639c 56db862bd0a2a29b7a97c7998ae383ff {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.WXS.A.hg38 C3N-02424 LUAD WXS tissue_normal CPT0147100009 67833e4f-0dc8-4ac0-8ce9-6ee52ecd2375_wxs_gdc_realn.bam 32004020387 BAM harmonized CPTAC3 68c40083-a383-4658-af7b-57ceb40cbbed f804448732befc39e730932f8778f645 {"aliquot_tag": "ALQ_fcd110fb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02424.WXS.N C3N-02424 LUAD WXS blood_normal CPT0147110002 CPT0147110002.WholeExome.RP-1303.bam 35048486270 BAM submitted_aligned CPTAC3 5f020e61-4927-4571-8716-691db13378a0 37bdd3c031e2e186835de6e7ee78071f {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02424.WXS.N.hg38 C3N-02424 LUAD WXS blood_normal CPT0147110002 b4e53e9f-2917-4cae-b2c6-6feaa2594d37_wxs_gdc_realn.bam 47082662299 BAM harmonized CPTAC3 95c65d7f-22cc-4d98-9558-857cbd8b059e f96f1b55ca9bed342708215a851a38ee {"aliquot_tag": "ALQ_5663e0c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02424.WXS.T C3N-02424 LUAD WXS tumor CPT0147080010 CPT0147080010.WholeExome.RP-1303.bam 21804259642 BAM submitted_aligned CPTAC3 2e825448-79db-411a-9f64-5e1fd0de7faa c49039a3adbd3d0ff44941698e92532c {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02424.WXS.T.hg38 C3N-02424 LUAD WXS tumor CPT0147080010 8a378a0d-4f1b-434b-bb5d-1c58464508c7_wxs_gdc_realn.bam 29865328145 BAM harmonized CPTAC3 053f60e4-9af4-4f76-b385-ad3b64f3309f 7ff3fcaeaefd264b4ba4f1c22e45f3c3 {"aliquot_tag": "ALQ_673a017a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.MethArray.Green.A C3N-02425 LSCC Methylation_Array tissue_normal CPT0183270006 203219650221_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 cfb2ab63-3c11-4d90-bacc-a847056e42f8 d0b4e9f316c52a1ac3f32d5330d62567 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.MethArray.Green.T C3N-02425 LSCC Methylation_Array tumor CPT0183250007 203219650177_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 917061d8-664d-48fb-a319-183eb344fbd6 c25c63de25d46436a9974e8381a3d9af {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.MethArray.Red.A C3N-02425 LSCC Methylation_Array tissue_normal CPT0183270006 203219650221_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 ceb65dba-7343-44d0-991a-7108e974dc9f e1043eb7a31e363771e3b3f82aede94b {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.MethArray.Red.T C3N-02425 LSCC Methylation_Array tumor CPT0183250007 203219650177_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 5735844e-3589-4499-bde9-c7ff24302a6c 12b255aba7447ca3ef77b85cc20936a9 {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.miRNA-Seq.A.hg38 C3N-02425 LSCC miRNA-Seq tissue_normal CPT0183270009 fc765b12-2446-44d0-bcfa-bef86f26e81e_mirnaseq_gdc_realn.bam 231197459 BAM harmonized CPTAC3 eb79db45-15dd-429b-b6f0-1aee759215de 847bdcfdd53fb87327ecd6f0f65b55fb {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.miRNA-Seq.S13_L003_R1.T C3N-02425 LSCC miRNA-Seq tumor CPT0183250010 181219_UNC31-K00269_0173_BHYGJJBBXX_AGTCAA_S13_L003_R1_001.unaln.bam 208420688 BAM S13_L003_R1 submitted_unaligned CPTAC3 b1067c46-807d-4e4e-941e-2187285f5ca1 598fb91d03f4525e9b78cf2deced7d24 {"aliquot_tag": "ALQ_7182559c", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.miRNA-Seq.S16_L003_R1.A C3N-02425 LSCC miRNA-Seq tissue_normal CPT0183270009 181219_UNC31-K00269_0173_BHYGJJBBXX_CCGTCC_S16_L003_R1_001.unaln.bam 205152882 BAM S16_L003_R1 submitted_unaligned CPTAC3 6fff9b8f-5713-4b9b-b352-874b4ee6dfa5 859ca22f9539c166af6feaff6d67eb93 {"aliquot_tag": "ALQ_6b858f19", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.miRNA-Seq.T.hg38 C3N-02425 LSCC miRNA-Seq tumor CPT0183250010 519dca7c-1569-4434-8973-895a243ea645_mirnaseq_gdc_realn.bam 243984815 BAM harmonized CPTAC3 9a868cf9-cdb3-48d3-8a55-37af73dc563f 1984799f5f7177795be98a6681367dfc {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.RNA-Seq.chimeric.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.chimeric.gdc_realn.bam 123996928 BAM chimeric harmonized CPTAC3 d2b9a86c-ff09-4d63-aed2-02b44d04b5e8 803da8226c968e29103f8eec942952d1 {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.RNA-Seq.chimeric.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.chimeric.gdc_realn.bam 133213494 BAM chimeric harmonized CPTAC3 8dbfe855-69b9-49d9-91b4-a3ee6d99cbc2 1dab12c98551ff9e9527318076982a0c {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.RNA-Seq.genomic.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.genomic.gdc_realn.bam 9471228877 BAM genomic harmonized CPTAC3 2a680dc9-e57d-43dd-906a-374c9f6d877c 6e2312b19f34276ea6196dd7a9967282 {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.RNA-Seq.genomic.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.genomic.gdc_realn.bam 7497868509 BAM genomic harmonized CPTAC3 ec91f9a5-8ae2-4925-97c4-55f73d407ba3 09e1db895ced2a129af0ee148cb7644e {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.RNA-Seq.S25_L005_R1.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R1_001.fastq.gz 3469878631 FASTQ S25_L005_R1 submitted_unaligned CPTAC3 b6a712b2-6c76-4697-bf02-b1f57d227d94 7e065a79003e33206b2cb45a3328e3ac {"aliquot_tag": "ALQ_7182559c", "sample": "S25", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.RNA-Seq.S25_L005_R2.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R2_001.fastq.gz 3619589061 FASTQ S25_L005_R2 submitted_unaligned CPTAC3 e7f746b3-1b4d-41e9-b059-a2a72b507717 0dce386f2121042626d20fb60f9288db {"aliquot_tag": "ALQ_7182559c", "sample": "S25", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.RNA-Seq.S26_L005_R1.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R1_001.fastq.gz 4653520943 FASTQ S26_L005_R1 submitted_unaligned CPTAC3 ffa8ad9b-ddb5-4837-a842-7216d5614f91 62a02c63ad9db32c7e126f2064fd92be {"aliquot_tag": "ALQ_6b858f19", "sample": "S26", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.RNA-Seq.S26_L005_R2.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R2_001.fastq.gz 4800071059 FASTQ S26_L005_R2 submitted_unaligned CPTAC3 081b2745-ad92-4431-b857-0a88900f49eb 26544825dc82ca24c0a107ef891284cc {"aliquot_tag": "ALQ_6b858f19", "sample": "S26", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.RNA-Seq.transcriptome.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.transcriptome.gdc_realn.bam 12754217671 BAM transcriptome harmonized CPTAC3 0e65a21b-285f-446f-ab58-9d8575c31737 a2fe6db563b29f2d585cb83f10e8f1d6 {"aliquot_tag": "ALQ_6b858f19", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.RNA-Seq.transcriptome.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.transcriptome.gdc_realn.bam 10140660033 BAM transcriptome harmonized CPTAC3 14506509-c395-44cb-b732-5f1d4e4d750a dd175af5cc77f51d708d3f2908d0d05d {"aliquot_tag": "ALQ_7182559c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.WGS.A C3N-02425 LSCC WGS tissue_normal CPT0183270006 CPT0183270006.WholeGenome.RP-1303.bam 68113658987 BAM submitted_aligned CPTAC3 4fc9a6a1-4281-4db6-99d5-466e1d3fde02 8bd9563f1f0968e39335370a46849e63 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.WGS.A.hg38 C3N-02425 LSCC WGS tissue_normal CPT0183270006 e10db3e3-1144-4ef7-a960-e98f71a8c0a9_wgs_gdc_realn.bam 99336459347 BAM harmonized CPTAC3 3f22544c-f89c-4b01-9334-1e1b3465a1e4 6e24c219974886939d79a478f006c1b0 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.WGS.N C3N-02425 LSCC WGS blood_normal CPT0183310002 CPT0183310002.WholeGenome.RP-1303.bam 64957893306 BAM submitted_aligned CPTAC3 882edb3a-19e9-4689-8086-f8e02e2ed219 25cfe78e19e0fcd5470d2c8715b4a127 {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02425.WGS.N.hg38 C3N-02425 LSCC WGS blood_normal CPT0183310002 72330c53-0b7a-409b-9e93-11c08fc31d6d_wgs_gdc_realn.bam 94482265954 BAM harmonized CPTAC3 609f227d-1b3f-47be-86f2-8cd4abbd2c25 f1ce2bd8d2b005fb11dc74df1b09ed0b {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02425.WGS.T C3N-02425 LSCC WGS tumor CPT0183250007 CPT0183250007.WholeGenome.RP-1303.bam 64636891482 BAM submitted_aligned CPTAC3 095320ea-da84-4bd9-96f3-eb24a9634d28 7a30ce57b10ba81137171bae26102461 {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.WGS.T.hg38 C3N-02425 LSCC WGS tumor CPT0183250007 e34fc8d9-c7d2-4546-a98a-b789b4789e3c_wgs_gdc_realn.bam 94924473332 BAM harmonized CPTAC3 82cb75c9-ab32-47eb-998d-8b4fe4469eaf fbb8bb44af36cc1ea92f5d41587ec77c {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.WXS.A C3N-02425 LSCC WXS tissue_normal CPT0183270006 CPT0183270006.WholeExome.RP-1303.bam 22590931927 BAM submitted_aligned CPTAC3 1190e57a-7ec0-48cd-a1c7-784034f8fdad aa58682718f609df30c1802d7141f232 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.WXS.A.hg38 C3N-02425 LSCC WXS tissue_normal CPT0183270006 e10db3e3-1144-4ef7-a960-e98f71a8c0a9_wxs_gdc_realn.bam 31106816178 BAM harmonized CPTAC3 b907fb7c-9ee7-4414-90ba-e79ca4ae7726 5a7d10d032e128d30a6308bbe6bb38f9 {"aliquot_tag": "ALQ_fb3a9288", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02425.WXS.N C3N-02425 LSCC WXS blood_normal CPT0183310002 CPT0183310002.WholeExome.RP-1303.bam 22046831509 BAM submitted_aligned CPTAC3 ab35bcc0-4db8-4a96-8c13-7813033e4150 a44121d23f664e21015efc36163065af {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02425.WXS.N.hg38 C3N-02425 LSCC WXS blood_normal CPT0183310002 72330c53-0b7a-409b-9e93-11c08fc31d6d_wxs_gdc_realn.bam 30336413356 BAM harmonized CPTAC3 eaa786cd-e457-427d-85c3-cfdd9897cde2 a82efa3fe489ea4355452b95b1d88d28 {"aliquot_tag": "ALQ_b84b7094", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02425.WXS.T C3N-02425 LSCC WXS tumor CPT0183250007 CPT0183250007.WholeExome.RP-1303.bam 25821111599 BAM submitted_aligned CPTAC3 8a04394a-3974-4314-a018-5f71d648ddd1 0e909d2f34300d74fd47344c1b1f22a3 {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02425.WXS.T.hg38 C3N-02425 LSCC WXS tumor CPT0183250007 e34fc8d9-c7d2-4546-a98a-b789b4789e3c_wxs_gdc_realn.bam 35276894044 BAM harmonized CPTAC3 1bb8f868-05ec-45c8-8edd-959cb60855b8 862fee334c71faec1ddf7cf53d47097d {"aliquot_tag": "ALQ_f6fdf17e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.MethArray.Green.A C3N-02426 LSCC Methylation_Array tissue_normal CPT0147200009 203220070171_R01C01_Grn.idat 13676219 IDAT Green NA CPTAC3 6efc7ca3-bee9-4a49-ad52-84f6105b20d3 ba726a2205e7f069d377c4a5518beedb {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.MethArray.Green.T C3N-02426 LSCC Methylation_Array tumor CPT0147180010 203219650211_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 95c54064-b6d7-4390-8c50-be500f263261 0be3acfde09ba88a76a884365c1b551a {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.MethArray.Red.A C3N-02426 LSCC Methylation_Array tissue_normal CPT0147200009 203220070171_R01C01_Red.idat 13676219 IDAT Red NA CPTAC3 b84ac8f4-fc99-453d-881a-5b0976eb6542 a59993bc7f513121d1d3cca4bf6a6484 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.MethArray.Red.T C3N-02426 LSCC Methylation_Array tumor CPT0147180010 203219650211_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 652f6e2d-003c-4a35-87d4-342127ce89b5 1e6ac6c787a4bd72d79de7180a2c4685 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.miRNA-Seq.A.hg38 C3N-02426 LSCC miRNA-Seq tissue_normal CPT0147200006 675d1852-5195-4286-93d7-992412f6183b_mirnaseq_gdc_realn.bam 401578235 BAM harmonized CPTAC3 035f65e6-f899-451c-a685-58c787be3efa 9c38bd703bb8ec887cfa31224c4ddfbb {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.miRNA-Seq.S10_L001_R1.A C3N-02426 LSCC miRNA-Seq tissue_normal CPT0147200006 181219_UNC31-K00269_0173_BHYGJJBBXX_TAGCTT_S10_L001_R1_001.unaln.bam 361688001 BAM S10_L001_R1 submitted_unaligned CPTAC3 e76e3d97-0c6b-417d-b6db-83f165990609 2fd9c8c222e1e9a7dcb6ee57fc8e5553 {"aliquot_tag": "ALQ_eafa7fc4", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.miRNA-Seq.S9_L001_R1.T C3N-02426 LSCC miRNA-Seq tumor CPT0147180007 181219_UNC31-K00269_0173_BHYGJJBBXX_GATCAG_S9_L001_R1_001.unaln.bam 201216681 BAM S9_L001_R1 submitted_unaligned CPTAC3 aa6e7564-d682-49e8-9dfa-3ac71c855d9f e2fa0e6bdfafefcbd4f4a846144ed421 {"aliquot_tag": "ALQ_2b19763d", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.miRNA-Seq.T.hg38 C3N-02426 LSCC miRNA-Seq tumor CPT0147180007 8e948cdc-b15f-4ea9-855d-34036fb52234_mirnaseq_gdc_realn.bam 221040104 BAM harmonized CPTAC3 ba8b2440-d911-4068-8edb-544defd4641f a2a3f9d0f1e47747954adf5d60719965 {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.RNA-Seq.chimeric.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.chimeric.gdc_realn.bam 36200505 BAM chimeric harmonized CPTAC3 58b5e36d-9f1c-4790-8359-490611023006 16f20465db552b14ecbdc4970942817f {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.RNA-Seq.chimeric.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.chimeric.gdc_realn.bam 25680492 BAM chimeric harmonized CPTAC3 37415724-65e6-4525-83b9-aab2b87abf2c d05578da0a1d3f1e5ee41bca03a91621 {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.RNA-Seq.genomic.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.genomic.gdc_realn.bam 9717814275 BAM genomic harmonized CPTAC3 1d861f87-97e3-48d5-9428-aba0f9bebb1e ad9a3aaca19c4ab2136a84426e15c9d0 {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.RNA-Seq.genomic.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.genomic.gdc_realn.bam 7574831581 BAM genomic harmonized CPTAC3 1b99b18b-6638-4027-b77f-38f5df312955 d857f2054333ea7382fbc81e77484ace {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.RNA-Seq.S25_L007_R1.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R1_001.fastq.gz 3387627512 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 1c4b2b7b-1d51-4b3b-89af-2f8f2b40f915 0222f4bd713642c1d3a54b76c3e67711 {"aliquot_tag": "ALQ_2b19763d", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.RNA-Seq.S25_L007_R2.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R2_001.fastq.gz 3578674027 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 e6a00b5b-fb4e-4f9a-b188-517f09f6a6ad 4d93590fc4935c2905dd8938f3089018 {"aliquot_tag": "ALQ_2b19763d", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.RNA-Seq.S26_L007_R1.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R1_001.fastq.gz 4514700457 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 46c22361-74ec-42c0-ad46-43c4aba06e89 6ea1f6d4ce53f8abcb253f17c480553c {"aliquot_tag": "ALQ_eafa7fc4", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.RNA-Seq.S26_L007_R2.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R2_001.fastq.gz 4748763277 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 8346022d-abce-41d8-a26b-ffc567871e59 92f6752b9c7e2949d24b04367d2792ee {"aliquot_tag": "ALQ_eafa7fc4", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.RNA-Seq.transcriptome.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.transcriptome.gdc_realn.bam 12366927083 BAM transcriptome harmonized CPTAC3 1c4ec1ea-de71-4ab8-b165-0a3ee67386a5 a852e44542f234cb0e8a38f5cd270ce1 {"aliquot_tag": "ALQ_eafa7fc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.RNA-Seq.transcriptome.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.transcriptome.gdc_realn.bam 9674806663 BAM transcriptome harmonized CPTAC3 02271f9f-59de-411f-a901-dab7fbdba07d 0c1f94d2011551a067ce1fc68334624a {"aliquot_tag": "ALQ_2b19763d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.WGS.A C3N-02426 LSCC WGS tissue_normal CPT0147200009 CPT0147200009.WholeGenome.RP-1303.bam 69936875814 BAM submitted_aligned CPTAC3 6062123c-8635-4572-a011-6617f84bf64a 15f326bd9be2e7cc8f42964cc8575790 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.WGS.A.hg38 C3N-02426 LSCC WGS tissue_normal CPT0147200009 4e0695ea-e6c2-48c9-b9b3-11f2f2bfbc45_wgs_gdc_realn.bam 102087040407 BAM harmonized CPTAC3 38601758-4b1d-44e1-93f7-83ce52d07748 62e6af795bc8346fe257e1cad988ab54 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.WGS.N C3N-02426 LSCC WGS blood_normal CPT0147220004 CPT0147220004.WholeGenome.RP-1303.bam 64972657812 BAM submitted_aligned CPTAC3 b7ec3224-0417-4b98-9fb1-2718a89f4ad4 d9606c096309ae6c1b99438080a15337 {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02426.WGS.N.hg38 C3N-02426 LSCC WGS blood_normal CPT0147220004 6050187d-95a4-438f-8e26-77e9a3f19eae_wgs_gdc_realn.bam 93855791086 BAM harmonized CPTAC3 abc333f7-1456-4fb9-999b-4e8089e0dee3 b9dd9dd29bf502a8cb7bda439df7f24e {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02426.WGS.T C3N-02426 LSCC WGS tumor CPT0147180010 CPT0147180010.WholeGenome.RP-1303.bam 62363135349 BAM submitted_aligned CPTAC3 f876c1b5-440d-4713-b5b0-6517acb8a363 cdeab4375275b361bbdfd36a65b552bb {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.WGS.T.hg38 C3N-02426 LSCC WGS tumor CPT0147180010 700bad5b-96de-413e-bf46-3cdb5c72ad02_wgs_gdc_realn.bam 91131346394 BAM harmonized CPTAC3 6f689886-d8ac-4983-a5a4-2f2349c8da40 ccc39379cdbe98af81817ed91b44dd59 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.WXS.A C3N-02426 LSCC WXS tissue_normal CPT0147200009 CPT0147200009.WholeExome.RP-1303.bam 22686273462 BAM submitted_aligned CPTAC3 7b793f94-a474-4ff2-b673-030332eec2a7 02384e6f5a7a444128c839333542d1b6 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.WXS.A.hg38 C3N-02426 LSCC WXS tissue_normal CPT0147200009 4e0695ea-e6c2-48c9-b9b3-11f2f2bfbc45_wxs_gdc_realn.bam 31258377398 BAM harmonized CPTAC3 9df043e1-2846-49e6-8c38-8deb27d9d552 86da6fa7aae5664ab96d7b28563d0443 {"aliquot_tag": "ALQ_7a456255", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02426.WXS.N C3N-02426 LSCC WXS blood_normal CPT0147220004 CPT0147220004.WholeExome.RP-1303.bam 22265204696 BAM submitted_aligned CPTAC3 d97c1ec9-b4b3-4ff1-b759-1b0b0b5c589d cf512737f74deae34740ec8025ba972c {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02426.WXS.N.hg38 C3N-02426 LSCC WXS blood_normal CPT0147220004 6050187d-95a4-438f-8e26-77e9a3f19eae_wxs_gdc_realn.bam 31017409374 BAM harmonized CPTAC3 7b9c2faa-b0be-4b61-b977-c34bcd75c9e9 95a37dea6559c438448268e2067923d5 {"aliquot_tag": "ALQ_7e344d88", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02426.WXS.T C3N-02426 LSCC WXS tumor CPT0147180010 CPT0147180010.WholeExome.RP-1303.bam 23352169250 BAM submitted_aligned CPTAC3 7b61972f-30d1-4f62-89e3-5811e3e69ce0 b0e5321d819210827356037d6efa1051 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02426.WXS.T.hg38 C3N-02426 LSCC WXS tumor CPT0147180010 700bad5b-96de-413e-bf46-3cdb5c72ad02_wxs_gdc_realn.bam 31823894935 BAM harmonized CPTAC3 68b3a87d-f49f-48ae-be9c-d6edd25e780d 98c72b9e018f00ec3dabe35b868c6211 {"aliquot_tag": "ALQ_ac66d2df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.MethArray.Green.T C3N-02429 CCRCC Methylation_Array tumor CPT0147280010 203219650217_R07C01_Grn.idat 13676217 IDAT Green NA CPTAC3 83e6b238-4b37-45af-9d1e-7fee368b9184 acbdd4811d27d14341c5e43e0c6fa029 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.MethArray.Red.T C3N-02429 CCRCC Methylation_Array tumor CPT0147280010 203219650217_R07C01_Red.idat 13676217 IDAT Red NA CPTAC3 96e7ef62-d3b5-4106-bc6a-253530ac1185 f6ebf075d21942fc123d568741ada5f1 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.miRNA-Seq.A.hg38 C3N-02429 CCRCC miRNA-Seq tissue_normal CPT0147300006 50a60b30-fe26-4015-93cd-d085ad9791b9_mirnaseq_gdc_realn.bam 295785516 BAM harmonized CPTAC3 677b4a36-cfcf-4af0-9f21-92fcf9852faf fedd9cf16221fa42ffc12b6bfad57b87 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02429.miRNA-Seq.S20_L002_R1.A C3N-02429 CCRCC miRNA-Seq tissue_normal CPT0147300006 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L002_R1_001.unaln.bam 271658789 BAM S20_L002_R1 submitted_unaligned CPTAC3 21644d5c-73d9-4018-8c70-bb88ef8f0a15 27d6b3fb93fc3c2bcd0bee2fadceb8f5 {"aliquot_tag": "ALQ_21a6ac61", "sample": "S20", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02429.miRNA-Seq.S42_L005_R1.T C3N-02429 CCRCC miRNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0176_AHYGLVBBXX_TAATCG_S42_L005_R1_001.unaln.bam 196560236 BAM S42_L005_R1 submitted_unaligned CPTAC3 fcf9819e-476a-4cf9-8548-de89df79361b 8446f2db94cd6e7e970da6c416d319db {"aliquot_tag": "ALQ_ad8d0493", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.miRNA-Seq.T.hg38 C3N-02429 CCRCC miRNA-Seq tumor CPT0147280007 58aeeeca-03df-45a2-8685-3d7dadd47aba_mirnaseq_gdc_realn.bam 212208150 BAM harmonized CPTAC3 335cc426-e08f-41bc-865f-f302d148a9d1 688830952be4986f1f2b4fb504e48a73 {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.RNA-Seq.chimeric.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.chimeric.gdc_realn.bam 95841647 BAM chimeric harmonized CPTAC3 f465b094-1f54-4c22-a645-756091b46703 885b339e22d5e2bc4da4cfec3330b5f9 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02429.RNA-Seq.chimeric.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.chimeric.gdc_realn.bam 60019868 BAM chimeric harmonized CPTAC3 975f6ac9-f96d-4962-9d70-dc8c34957c95 81df1becfd259850dd38573295c6f0ac {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.RNA-Seq.genomic.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.genomic.gdc_realn.bam 9962072914 BAM genomic harmonized CPTAC3 2e2c4036-122e-4d92-a81b-3f1be0c7085c 773589d0fb37caa5ea38851c8d219879 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02429.RNA-Seq.genomic.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.genomic.gdc_realn.bam 8390892882 BAM genomic harmonized CPTAC3 6f09f414-e13b-4406-809e-b0e374b02f8c 557691d0d9990be40de77ce6fad3e80f {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.RNA-Seq.S19_L007_R1.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R1_001.fastq.gz 4345438144 FASTQ S19_L007_R1 submitted_unaligned CPTAC3 308c1f98-d5e0-4e59-904c-5b94de80d70d 167ff27c8767c71946f7b318285404fd {"aliquot_tag": "ALQ_21a6ac61", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02429.RNA-Seq.S19_L007_R2.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R2_001.fastq.gz 4741614628 FASTQ S19_L007_R2 submitted_unaligned CPTAC3 fb6e5799-3f00-4cdf-a04f-3d7aef5103de 07b1b2490701be7d15cac9c98ff4fe81 {"aliquot_tag": "ALQ_21a6ac61", "sample": "S19", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02429.RNA-Seq.S22_L006_R1.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4176818424 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 d1aa949a-96ca-4221-907c-cf3fbc0b3ff9 c785aa658226036652516d18e89c197a {"aliquot_tag": "ALQ_ad8d0493", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.RNA-Seq.S22_L006_R2.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4167913017 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 c4e77c72-3cc0-4ed1-95a0-0b77db5ae585 dfbe1b500166308063042e458829748b {"aliquot_tag": "ALQ_ad8d0493", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.RNA-Seq.transcriptome.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.transcriptome.gdc_realn.bam 11614986306 BAM transcriptome harmonized CPTAC3 c01f92ff-9bbf-4f88-872d-2c73516579d3 4bbc4ab3c3a188d69b57aefc9554ae76 {"aliquot_tag": "ALQ_21a6ac61", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02429.RNA-Seq.transcriptome.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.transcriptome.gdc_realn.bam 11566892255 BAM transcriptome harmonized CPTAC3 c02a87c7-9d1b-4e60-89e5-2f1bfe3447e2 1c9aa2f786e031b4a224b354c7cfbb76 {"aliquot_tag": "ALQ_ad8d0493", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.WGS.N C3N-02429 CCRCC WGS blood_normal CPT0147310002 CPT0147310002.WholeGenome.RP-1303.bam 104664377280 BAM submitted_aligned CPTAC3 419a466d-4c5b-4c2f-a63a-08de046f67d5 b2649e01e9f146a747c0866f64f9d9f4 {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02429.WGS.N.hg38 C3N-02429 CCRCC WGS blood_normal CPT0147310002 408bb107-9884-4af4-88df-7e0012ce26d3_wgs_gdc_realn.bam 152219181292 BAM harmonized CPTAC3 a963bf8d-4bf5-4f8c-b9dd-f541dfde772d 2872dc1c1c7af84961a8de527c6db0c3 {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02429.WGS.T C3N-02429 CCRCC WGS tumor CPT0147280010 CPT0147280010.WholeGenome.RP-1303.bam 97608013192 BAM submitted_aligned CPTAC3 7540d74c-251a-415a-b123-5015a5c93e78 86b86f67a87134b12d3e7feb31cc499a {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.WGS.T.hg38 C3N-02429 CCRCC WGS tumor CPT0147280010 6751ad3a-d188-444b-bed2-ff769ce17c6a_wgs_gdc_realn.bam 143863227673 BAM harmonized CPTAC3 e786253e-9076-4682-abfe-dc58ace32afc ab0cfda14c87cc4eda9e63fabf120603 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.WXS.N C3N-02429 CCRCC WXS blood_normal CPT0147310002 CPT0147310002.WholeExome.RP-1303.bam 21670994290 BAM submitted_aligned CPTAC3 e09668c2-f8ae-420a-8286-2574631fa6f0 16dbf885da0f90c6df77be88a58e778b {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02429.WXS.N.hg38 C3N-02429 CCRCC WXS blood_normal CPT0147310002 408bb107-9884-4af4-88df-7e0012ce26d3_wxs_gdc_realn.bam 29788929191 BAM harmonized CPTAC3 6c917e82-377a-4b48-8e0d-201c4c903b4b 34ce493cb3cac14159110fd631de1e66 {"aliquot_tag": "ALQ_1bab41c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02429.WXS.T C3N-02429 CCRCC WXS tumor CPT0147280010 CPT0147280010.WholeExome.RP-1303.bam 23728157719 BAM submitted_aligned CPTAC3 17344faf-a3df-4772-8680-0b21616314f5 0702e09f82a9d25f6585b8e65c258848 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02429.WXS.T.hg38 C3N-02429 CCRCC WXS tumor CPT0147280010 6751ad3a-d188-444b-bed2-ff769ce17c6a_wxs_gdc_realn.bam 33485301863 BAM harmonized CPTAC3 fdfcfcdf-afad-4cd6-8b53-2acbe13d70b8 3dd0547c1cf626edf97745355fed0434 {"aliquot_tag": "ALQ_2af2a071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.MethArray.Green.A C3N-02431 CCRCC Methylation_Array tissue_normal CPT0183350006 204930640122_R04C01_Grn.idat 13677965 IDAT Green NA CPTAC3 09afe886-543b-445b-a735-c6e5f38c12b6 c0786a22deeaf9f9a80fc21f30bc4705 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.MethArray.Green.T C3N-02431 CCRCC Methylation_Array tumor CPT0183360007 203219670122_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c95044df-ed84-4faf-9da0-8c4eed7b56ab 5a4d16503cc4b7f0b84454897e6791c1 {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.MethArray.Red.A C3N-02431 CCRCC Methylation_Array tissue_normal CPT0183350006 204930640122_R04C01_Red.idat 13677965 IDAT Red NA CPTAC3 15017efc-bee0-4eaa-bbcb-3d4172d05c6c 1983841a63fed727ac1f633b88a6b0d8 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.MethArray.Red.T C3N-02431 CCRCC Methylation_Array tumor CPT0183360007 203219670122_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 55dbdf4a-b23b-40f1-a99c-f5bae598825f 434ecaad5ed373615bf823a1e27e8eae {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.miRNA-Seq.A.hg38 C3N-02431 CCRCC miRNA-Seq tissue_normal CPT0183350009 ccf62edc-c023-44eb-abbb-537b657b9efa_mirnaseq_gdc_realn.bam 264827074 BAM harmonized CPTAC3 d4ebc59e-649d-4e5b-a8f1-ede048d0dd5c 02aa7f0e91af8edede497ffcffee4d95 {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.miRNA-Seq.S2_L006_R1.A C3N-02431 CCRCC miRNA-Seq tissue_normal CPT0183350009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L006_R1_001.unaln.bam 242893179 BAM S2_L006_R1 submitted_unaligned CPTAC3 c8be33e4-16cd-44ce-90c0-b9133de880af 2551e45d8d3aae757424b4b70c165a38 {"aliquot_tag": "ALQ_da190fdc", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.miRNA-Seq.S39_L005_R1.T C3N-02431 CCRCC miRNA-Seq tumor CPT0183360010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L005_R1_001.unaln.bam 222831874 BAM S39_L005_R1 submitted_unaligned CPTAC3 1ff285a5-cd88-468d-a620-556f158b65b8 e25b2cd5a7aeb20263c253f37cdfd304 {"aliquot_tag": "ALQ_fd7efce9", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.miRNA-Seq.T.hg38 C3N-02431 CCRCC miRNA-Seq tumor CPT0183360010 0aab963a-cc49-47b3-af0d-13ae08494949_mirnaseq_gdc_realn.bam 246190441 BAM harmonized CPTAC3 eed8656f-8c9c-46ef-9171-2c9f1861fdb7 a57dd602cd8e8f561239892069f093c5 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.RNA-Seq.chimeric.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.chimeric.gdc_realn.bam 44971291 BAM chimeric harmonized CPTAC3 aaa62b87-6ace-46b4-8f41-f6e1c4e5db78 d183a3b72a3a8e96a403a2e49dfe1a7f {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.RNA-Seq.chimeric.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.chimeric.gdc_realn.bam 36451586 BAM chimeric harmonized CPTAC3 85d9c7a3-b7a1-430e-b1b3-8bce88420e4c a6f3f98755974d36ea5c886622bf1bc6 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.RNA-Seq.genomic.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.genomic.gdc_realn.bam 9472440199 BAM genomic harmonized CPTAC3 8b5b3272-62d2-4e6e-9c4c-ce9b475ed314 73910ab62675543f4fad2517b61af3ce {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.RNA-Seq.genomic.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.genomic.gdc_realn.bam 7481039104 BAM genomic harmonized CPTAC3 26ee70d9-6bf0-41fa-be5d-d89f88974c41 ced30efa8c2f45a218e15c47ee414340 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.RNA-Seq.S6_L002_R1.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R1_001.fastq.gz 4438705682 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 4469beff-be49-4f84-b01e-6755fb50d1dc 041bc6802c8fc7f40c83b0cb248663e7 {"aliquot_tag": "ALQ_da190fdc", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.RNA-Seq.S6_L002_R2.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R2_001.fastq.gz 4303117253 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 e7ab8afe-fefa-48b6-a8bf-b9df7fc71c3a ba1bc4dcb52f0ac3dc9d13e184507643 {"aliquot_tag": "ALQ_da190fdc", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.RNA-Seq.S8_L008_R1.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R1_001.fastq.gz 3564454984 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 5277ce10-1648-495b-9c1f-1bafacfc0edf eb201a20f733b9dd3c1e013b6c60daaa {"aliquot_tag": "ALQ_fd7efce9", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.RNA-Seq.S8_L008_R2.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R2_001.fastq.gz 3801920665 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 b2af3af4-1c59-4102-87cd-19bc734654e7 ceddffc7a58b489e395b373946b0417f {"aliquot_tag": "ALQ_fd7efce9", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.RNA-Seq.transcriptome.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.transcriptome.gdc_realn.bam 10029244047 BAM transcriptome harmonized CPTAC3 3481741b-2c65-48b5-84fd-52de993e85d0 e2dc849d1199da81cb9865930840d68d {"aliquot_tag": "ALQ_da190fdc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.RNA-Seq.transcriptome.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.transcriptome.gdc_realn.bam 10100512282 BAM transcriptome harmonized CPTAC3 77118153-1b15-400c-9186-820b8543977a feb9ddc2adafd2d95a11e98cb59e5455 {"aliquot_tag": "ALQ_fd7efce9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.WGS.N C3N-02431 CCRCC WGS blood_normal CPT0183410002 CPT0183410002.WholeGenome.RP-1303.bam 99924278854 BAM submitted_aligned CPTAC3 3ce92c10-4c64-4c03-b0b8-1add86e635b3 5014bec9b0f1b82483019e12df879d3d {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02431.WGS.N.hg38 C3N-02431 CCRCC WGS blood_normal CPT0183410002 8836c002-6b85-4c30-97cf-8ba51924f07a_wgs_gdc_realn.bam 143220227850 BAM harmonized CPTAC3 9e828b23-4d5a-4c78-bee2-e1a6f93ebb64 f67bdd049ba43970593d3721724e4ff3 {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02431.WGS.T C3N-02431 CCRCC WGS tumor CPT0183360007 CPT0183360007.WholeGenome.RP-1303.bam 103210485964 BAM submitted_aligned CPTAC3 d2705e47-74d5-413a-90d8-53e1aa116c61 fa4b91a4a6dbb554be21fe87bf262960 {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.WGS.T.hg38 C3N-02431 CCRCC WGS tumor CPT0183360007 8b339bfe-4e79-48f2-9a3f-b5cc37487039_wgs_gdc_realn.bam 153312243819 BAM harmonized CPTAC3 1de39554-9227-4989-a6fb-29c672b31a84 5a2d82ed482696607ab97bc6d29d25ea {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.WXS.A C3N-02431 CCRCC WXS tissue_normal CPT0183350006 CPT0183350006.WholeExome.RP-1303.bam 20825809534 BAM submitted_aligned CPTAC3 47cfc421-25dd-4566-9eea-c404a8a6d50a 3e461a14ac8b4788c7b57e7979c2ad43 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.WXS.A.hg38 C3N-02431 CCRCC WXS tissue_normal CPT0183350006 e51e75b2-b6f1-4bcb-b073-c89e867e1fa8_wxs_gdc_realn.bam 28178151784 BAM harmonized CPTAC3 c6123edd-473e-4911-9987-6744d48bf546 368d56a210e60e6e9f089e3c4ba49f65 {"aliquot_tag": "ALQ_4aa6124d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02431.WXS.N C3N-02431 CCRCC WXS blood_normal CPT0183410002 CPT0183410002.WholeExome.RP-1303.bam 21622082131 BAM submitted_aligned CPTAC3 340728a9-856e-4ab0-9f72-5d989d0ef278 0e76ed0cd2b41e3414c65f40fc00d783 {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02431.WXS.N.hg38 C3N-02431 CCRCC WXS blood_normal CPT0183410002 8836c002-6b85-4c30-97cf-8ba51924f07a_wxs_gdc_realn.bam 29401187890 BAM harmonized CPTAC3 2d0211fd-e6af-4f21-a1b3-5bcb521a63cd 9dbe4e535b522542538fcf249cca0ff8 {"aliquot_tag": "ALQ_a54e402c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02431.WXS.T C3N-02431 CCRCC WXS tumor CPT0183360007 CPT0183360007.WholeExome.RP-1303.bam 26954286744 BAM submitted_aligned CPTAC3 0af54729-5123-4059-8543-5a1f3e498573 ed5fd24c0be340cbae8a932697f1af6b {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02431.WXS.T.hg38 C3N-02431 CCRCC WXS tumor CPT0183360007 8b339bfe-4e79-48f2-9a3f-b5cc37487039_wxs_gdc_realn.bam 36657940360 BAM harmonized CPTAC3 c43c868f-ee0f-488a-8447-55ed1826337d f058344761151983223506a632491014 {"aliquot_tag": "ALQ_7a01580b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.MethArray.Green.A C3N-02433 LUAD Methylation_Array tissue_normal CPT0147400009 203219670118_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 20d18711-adc0-4011-aa52-252174197eb9 4052b89e45be74de23ee863011199ffb {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.MethArray.Green.T C3N-02433 LUAD Methylation_Array tumor CPT0147380010 203219720203_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6374ea29-d70f-40da-b1d8-24876a356599 9374eaeececc958034cfd4ac14ee37ac {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.MethArray.Red.A C3N-02433 LUAD Methylation_Array tissue_normal CPT0147400009 203219670118_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 4fbe6be2-0ba2-4a3a-9346-0ba35a23be4a d9f145058ae05af647562a6414a5fb7e {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.MethArray.Red.T C3N-02433 LUAD Methylation_Array tumor CPT0147380010 203219720203_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 2d4440ce-b175-4396-92ed-8c1ef7d18410 0f58388e2eba5c5c711bdf8405605d2c {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.miRNA-Seq.A.hg38 C3N-02433 LUAD miRNA-Seq tissue_normal CPT0147400006 a002991b-9dec-4b7f-8153-9ee7756e95fc_mirnaseq_gdc_realn.bam 286815118 BAM harmonized CPTAC3 10f530f0-a843-401d-8c5f-da4dffb3828c 3453e92fcda5898fb2b4121323fc0276 {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.miRNA-Seq.S16_L003_R1.T C3N-02433 LUAD miRNA-Seq tumor CPT0147380007 181108_UNC31-K00269_0162_AH255GBBXY_CTCAGA_S16_L003_R1_001.unaln.bam 254630544 BAM S16_L003_R1 submitted_unaligned CPTAC3 e205afe2-1e83-4390-8e34-9822b6c1258c 8fa03367bf5c20a20174b948071d9c5c {"aliquot_tag": "ALQ_66d1d736", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.miRNA-Seq.S7_L003_R1.A C3N-02433 LUAD miRNA-Seq tissue_normal CPT0147400006 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L003_R1_001.unaln.bam 260059873 BAM S7_L003_R1 submitted_unaligned CPTAC3 45c1088d-55a2-43ac-a76d-c0b12d93f7b6 30a3696e28a1464285da5caf5ae1a6df {"aliquot_tag": "ALQ_3ca39cd9", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.miRNA-Seq.T.hg38 C3N-02433 LUAD miRNA-Seq tumor CPT0147380007 ae6e9617-2369-4201-a9f1-0fbe5e1da88e_mirnaseq_gdc_realn.bam 278051206 BAM harmonized CPTAC3 0f05feff-c57e-4af1-97db-512151c9c2f2 8f8bfdc76b1050c3ba31efee18798ce9 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.RNA-Seq.chimeric.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.chimeric.gdc_realn.bam 116363936 BAM chimeric harmonized CPTAC3 7801774d-87a9-48c4-805e-7af49bee1d7b b52340c6e19c3b2551cc56e58b3b89bd {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.RNA-Seq.chimeric.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.chimeric.gdc_realn.bam 47217725 BAM chimeric harmonized CPTAC3 f3b82540-3dc3-4e05-8da8-e58311940168 b53773f739e2bf67588c3bbba1dff1b8 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.RNA-Seq.genomic.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.genomic.gdc_realn.bam 9735666765 BAM genomic harmonized CPTAC3 74d92f06-5512-440e-82a2-e7208877560a 2852b96c1315cdda2d250528f5e350e0 {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.RNA-Seq.genomic.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.genomic.gdc_realn.bam 9701309554 BAM genomic harmonized CPTAC3 34a0b54d-59c8-4530-895e-5c8bd1be2dd9 84b7eb5692cfbf39549c58d362b9e324 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.RNA-Seq.S1_L007_R1.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R1_001.fastq.gz 4590905055 FASTQ S1_L007_R1 submitted_unaligned CPTAC3 97451b25-7512-433e-ab1b-bedbfb04a884 754782571390fd60c588b625ac4cf88f {"aliquot_tag": "ALQ_66d1d736", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.RNA-Seq.S1_L007_R2.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R2_001.fastq.gz 4717482758 FASTQ S1_L007_R2 submitted_unaligned CPTAC3 a123cddc-0050-460a-a8b6-4c9d24a48d57 507c950c68d35b42e7b29bd161729c8c {"aliquot_tag": "ALQ_66d1d736", "sample": "S1", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.RNA-Seq.S2_L001_R1.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R1_001.fastq.gz 4452697529 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 bc1582f7-fa85-430f-beff-420f015df598 c6c9282d5f80c6b0204b7b6bfb643b2f {"aliquot_tag": "ALQ_3ca39cd9", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.RNA-Seq.S2_L001_R2.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R2_001.fastq.gz 4941418364 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 7798fd3f-e078-4519-804f-9b41b79de825 bb298fa7cb4f81b71ac8aa7d385bc247 {"aliquot_tag": "ALQ_3ca39cd9", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.RNA-Seq.transcriptome.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.transcriptome.gdc_realn.bam 11606713666 BAM transcriptome harmonized CPTAC3 9640cc2b-8e44-429f-9108-df9beaf55c0e 1efe0a8989e4fbfac95cca3d57a7435e {"aliquot_tag": "ALQ_3ca39cd9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.RNA-Seq.transcriptome.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.transcriptome.gdc_realn.bam 11860345844 BAM transcriptome harmonized CPTAC3 756fe12e-1374-407c-ad03-8253c1651f7f af49ddc700f91719ef0e46f1ff1e4158 {"aliquot_tag": "ALQ_66d1d736", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.WGS.A C3N-02433 LUAD WGS tissue_normal CPT0147400009 CPT0147400009.WholeGenome.RP-1303.bam 60810496752 BAM submitted_aligned CPTAC3 0ee0f175-841c-453f-8a2c-1cebb4b25a9e a7db15ce0f5aaa233a1f89f7e0ddb074 {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.WGS.A.hg38 C3N-02433 LUAD WGS tissue_normal CPT0147400009 0f0b6fff-90e7-4b7a-9400-6f9a623eac81_wgs_gdc_realn.bam 89167545293 BAM harmonized CPTAC3 655eda39-6341-4047-9fa5-cb43a4355b30 ad8049af9bb42faf69b1d647ba5ff34b {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.WGS.N C3N-02433 LUAD WGS blood_normal CPT0147410002 CPT0147410002.WholeGenome.RP-1303.bam 56363563780 BAM submitted_aligned CPTAC3 b143f920-a2c6-4419-936c-9063fc69d065 75952eddf21cbc0649230a8155ba1f13 {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02433.WGS.N.hg38 C3N-02433 LUAD WGS blood_normal CPT0147410002 075c856b-bc17-431b-9692-d02ec4b39a32_wgs_gdc_realn.bam 81719235650 BAM harmonized CPTAC3 bf71e4a2-7f68-4333-8f25-0c00054bd995 194675c2af044b6ab96b0d8c8aaea9bd {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02433.WGS.T C3N-02433 LUAD WGS tumor CPT0147380010 CPT0147380010.WholeGenome.RP-1303.bam 70563932947 BAM submitted_aligned CPTAC3 544de398-0400-44a1-b110-25620079366f 9f9bdf89d49e95adb64c79dde97f7ac0 {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.WGS.T.hg38 C3N-02433 LUAD WGS tumor CPT0147380010 4285bae5-67c5-466a-b08b-ddc845151568_wgs_gdc_realn.bam 101989737101 BAM harmonized CPTAC3 9ab2c762-ea9f-4e33-8e55-44526be3f958 ffefd4d845eb092ebd27a1154b0f1749 {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.WXS.A C3N-02433 LUAD WXS tissue_normal CPT0147400009 CPT0147400009.WholeExome.RP-1303.bam 27619393975 BAM submitted_aligned CPTAC3 848e9171-7204-4932-8d41-fbbcb211b10b 140f35a4860688d751d6dcbaf67ece9f {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.WXS.A.hg38 C3N-02433 LUAD WXS tissue_normal CPT0147400009 0f0b6fff-90e7-4b7a-9400-6f9a623eac81_wxs_gdc_realn.bam 37363671564 BAM harmonized CPTAC3 adff7c9b-f80e-4399-a930-cbb90652ecce 1c79f3bef3afb7c2c454d036c92b417d {"aliquot_tag": "ALQ_ac1c8148", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02433.WXS.N C3N-02433 LUAD WXS blood_normal CPT0147410002 CPT0147410002.WholeExome.RP-1303.bam 23304067464 BAM submitted_aligned CPTAC3 c3f9791e-8560-4a15-9f12-7eb30c7d8c41 0b067ce68fcde510ce14886425b979c6 {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02433.WXS.N.hg38 C3N-02433 LUAD WXS blood_normal CPT0147410002 075c856b-bc17-431b-9692-d02ec4b39a32_wxs_gdc_realn.bam 31925080780 BAM harmonized CPTAC3 36ff8ff4-7bef-49f9-a8f8-b0843c0b7241 a13638455a358b0bc1eafd52d85a53ac {"aliquot_tag": "ALQ_6ae7170", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02433.WXS.T C3N-02433 LUAD WXS tumor CPT0147380010 CPT0147380010.WholeExome.RP-1303.bam 27041522405 BAM submitted_aligned CPTAC3 a418b26e-3ee8-4409-b95b-98f31d4806af 0f343270bb29737801913482f722f65b {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02433.WXS.T.hg38 C3N-02433 LUAD WXS tumor CPT0147380010 4285bae5-67c5-466a-b08b-ddc845151568_wxs_gdc_realn.bam 37286723079 BAM harmonized CPTAC3 dcd1b30f-3f83-441b-8073-9bc5c9cae1cb ceb1b7217c9a25844a63912c3932bd59 {"aliquot_tag": "ALQ_e1ae73d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.MethArray.Green.A C3N-02434 LSCC Methylation_Array tissue_normal CPT0115860006 203219640068_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b2f6b6d9-1c1f-4d66-8b5d-8f43337182e7 dbb953bb34d0d056103a96fb4f4dca76 {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.MethArray.Green.T C3N-02434 LSCC Methylation_Array tumor CPT0115830009 203219650202_R02C01_Grn.idat 13676218 IDAT Green NA CPTAC3 c1fa8649-2cc2-46a2-94ce-481bfb0a9b0b d4c5060e9939f307410ee847c095c26c {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.MethArray.Red.A C3N-02434 LSCC Methylation_Array tissue_normal CPT0115860006 203219640068_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 1993af3c-fd3b-4065-8d3a-12c1e3fbd11c 7b4f76f6ebe6824a799eb747f319aa9d {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.MethArray.Red.T C3N-02434 LSCC Methylation_Array tumor CPT0115830009 203219650202_R02C01_Red.idat 13676218 IDAT Red NA CPTAC3 b7507e7f-2c72-4957-bb95-ceff9d87e952 c40e4c02d7ec57c859559b881125f40b {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.miRNA-Seq.A.hg38 C3N-02434 LSCC miRNA-Seq tissue_normal CPT0115860009 173cdd5b-48a1-4eab-91af-1a2afa6f0450_mirnaseq_gdc_realn.bam 236544879 BAM harmonized CPTAC3 db1ba857-ef81-4567-b68a-870e10cd22c3 808a323d735956565508c9449dd4d5c9 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.miRNA-Seq.S31_L002_R1.A C3N-02434 LSCC miRNA-Seq tissue_normal CPT0115860009 181219_UNC31-K00269_0173_BHYGJJBBXX_CACTCA_S31_L002_R1_001.unaln.bam 208451629 BAM S31_L002_R1 submitted_unaligned CPTAC3 4283cabb-875f-4d28-8ba2-41acb74550a3 0a6091b3bb485a40bf716453c30c9468 {"aliquot_tag": "ALQ_8be1abde", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.miRNA-Seq.S3_L001_R1.T C3N-02434 LSCC miRNA-Seq tumor CPT0115830006 181219_UNC31-K00269_0173_BHYGJJBBXX_TTAGGC_S3_L001_R1_001.unaln.bam 235405525 BAM S3_L001_R1 submitted_unaligned CPTAC3 11b345be-baf8-4421-b082-c80e71e831dc 3a1a7c4de5b7fafd0fd610231b3a033a {"aliquot_tag": "ALQ_d3be393f", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.miRNA-Seq.T.hg38 C3N-02434 LSCC miRNA-Seq tumor CPT0115830006 8a40d1e7-758b-4ecc-92db-78a63b1d3645_mirnaseq_gdc_realn.bam 265913623 BAM harmonized CPTAC3 b7c36fef-5fb8-48bd-8def-f4191a08bb76 40bf747bd064f04f863eca0afe7ebdf9 {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.RNA-Seq.chimeric.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.chimeric.gdc_realn.bam 27492820 BAM chimeric harmonized CPTAC3 720766b3-06ee-4cdb-b8e8-ae9a2526283e 03636166c4fd752dc2c32a6cb22261c4 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.RNA-Seq.chimeric.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.chimeric.gdc_realn.bam 30917503 BAM chimeric harmonized CPTAC3 5dc82dff-53fa-4d0d-8913-8ebe3dfcbee8 a9f2b536356532b12cbdfc826f91b5d6 {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.RNA-Seq.genomic.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.genomic.gdc_realn.bam 7566054442 BAM genomic harmonized CPTAC3 451d87b7-f03b-42c7-b119-df1a6c423513 a5f69028d9c67e2649ec6e4d372dac43 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.RNA-Seq.genomic.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.genomic.gdc_realn.bam 9683575190 BAM genomic harmonized CPTAC3 02c3a9e4-bf37-4836-bd2f-ce1a821b95c6 221641d5410c4dab38532edbefa8ef6f {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.RNA-Seq.S16_L004_R1.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3619815406 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 afc88f36-8755-4d30-9c5b-1522cfc1b664 485da95b02f366007256f4db8f88aeaa {"aliquot_tag": "ALQ_8be1abde", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.RNA-Seq.S16_L004_R2.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 3839334209 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 791437f7-5d32-4ba3-9cf7-28b1c7a7efa2 fab0843e15b025db953681f4f59e0d82 {"aliquot_tag": "ALQ_8be1abde", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.RNA-Seq.S17_L005_R1.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R1_001.fastq.gz 4325041872 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 e4f87c94-a026-4efc-9fcb-3a986805b519 deb9bfc7b96c22c4954380626a70dc08 {"aliquot_tag": "ALQ_d3be393f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.RNA-Seq.S17_L005_R2.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4503446918 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 4f26ed28-b994-4b20-bc67-806e8a36a1ca b614556634ba515bf018728db2cefbb7 {"aliquot_tag": "ALQ_d3be393f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.RNA-Seq.transcriptome.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.transcriptome.gdc_realn.bam 9838849058 BAM transcriptome harmonized CPTAC3 13d35420-5c82-4b8b-a04b-04d1786f3b90 b05c049b230ff06963605f24dc743455 {"aliquot_tag": "ALQ_8be1abde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.RNA-Seq.transcriptome.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.transcriptome.gdc_realn.bam 12807130496 BAM transcriptome harmonized CPTAC3 f344b546-167e-4926-852f-76fa082f5037 51cfc33368c7afe256a23ba6c50c716e {"aliquot_tag": "ALQ_d3be393f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.WGS.A C3N-02434 LSCC WGS tissue_normal CPT0115860006 CPT0115860006.WholeGenome.RP-1303.bam 56442469056 BAM submitted_aligned CPTAC3 884db3a4-1c23-45cd-9296-abba5477c356 8e5a512c9bf1140914cfa9eab50fc6da {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.WGS.A.hg38 C3N-02434 LSCC WGS tissue_normal CPT0115860006 55cb1ac6-fd2d-4494-845d-b1930d004a3a_wgs_gdc_realn.bam 82265321409 BAM harmonized CPTAC3 f509c792-9a9d-466d-bff0-1386da7a7c6a 7ab56c908c80ab1098096c262bb43eec {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.WGS.N C3N-02434 LSCC WGS blood_normal CPT0116430002 CPT0116430002.WholeGenome.RP-1303.bam 58549557265 BAM submitted_aligned CPTAC3 94449f3a-4121-4a81-8e11-e42c53223a5d 696bc93faad3be8a08f05e862c28f2e7 {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02434.WGS.N.hg38 C3N-02434 LSCC WGS blood_normal CPT0116430002 e7171412-d3ad-4793-ad31-101dab6a7d2e_wgs_gdc_realn.bam 85325708618 BAM harmonized CPTAC3 ac0f592d-1ce6-4cc2-afb3-0484a93af603 74fbaf0a73f144afede9625cfad9b5f5 {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02434.WGS.T C3N-02434 LSCC WGS tumor CPT0115830009 CPT0115830009.WholeGenome.RP-1303.bam 61349367716 BAM submitted_aligned CPTAC3 c5da433a-e6ac-4f82-be7f-2b8c97e29058 9200e15a84ba48e7422a871d15d5c8ca {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.WGS.T.hg38 C3N-02434 LSCC WGS tumor CPT0115830009 3b07b204-2fa5-46a2-8b88-ebf0c39b0f03_wgs_gdc_realn.bam 88801156431 BAM harmonized CPTAC3 951fe783-47bd-48cd-9e81-3140735b74e4 031d496aea8f8017431562b93b1bce06 {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.WXS.A C3N-02434 LSCC WXS tissue_normal CPT0115860006 CPT0115860006.WholeExome.RP-1303.bam 22221166982 BAM submitted_aligned CPTAC3 6cc0dcf1-1736-4b62-b29d-55589f41e955 950fa5612a3e617a25ad9a80f1afbf9b {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.WXS.A.hg38 C3N-02434 LSCC WXS tissue_normal CPT0115860006 55cb1ac6-fd2d-4494-845d-b1930d004a3a_wxs_gdc_realn.bam 30349442095 BAM harmonized CPTAC3 52e818d3-6000-468f-855a-860d9e004a4f e375564b5541dd66f8d783986c8ba0e9 {"aliquot_tag": "ALQ_1b5eb64f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02434.WXS.N C3N-02434 LSCC WXS blood_normal CPT0116430002 CPT0116430002.WholeExome.RP-1303.bam 24762007502 BAM submitted_aligned CPTAC3 4198569a-f447-4a92-a75c-aa52f7c0499f e6907e55d8f691118c35196ce31b1136 {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02434.WXS.N.hg38 C3N-02434 LSCC WXS blood_normal CPT0116430002 e7171412-d3ad-4793-ad31-101dab6a7d2e_wxs_gdc_realn.bam 34440493529 BAM harmonized CPTAC3 af765aa7-07a6-4bec-8f12-8e0a6d0c193e c5ecc51a7bee0aa9df0521aafbec730d {"aliquot_tag": "ALQ_92f927c0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02434.WXS.T C3N-02434 LSCC WXS tumor CPT0115830009 CPT0115830009.WholeExome.RP-1303.bam 28372670488 BAM submitted_aligned CPTAC3 c52f5015-b057-47b5-8f73-042f84e5b5b1 3cea9aed5c878fc5c077b8c77c8e7449 {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02434.WXS.T.hg38 C3N-02434 LSCC WXS tumor CPT0115830009 3b07b204-2fa5-46a2-8b88-ebf0c39b0f03_wxs_gdc_realn.bam 39600416463 BAM harmonized CPTAC3 60b1a4c5-7b90-40bd-8a01-c67d2bcb29aa 7565237ac773a7edda1cee45d6187c29 {"aliquot_tag": "ALQ_430124ae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.MethArray.Green.A C3N-02435 LSCC Methylation_Array tissue_normal CPT0241210006 203219650100_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5f177b19-ab50-408e-a413-bacb12c53cb3 6acb911f80d0b22c49a85e94ab1ce58e {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.MethArray.Green.T C3N-02435 LSCC Methylation_Array tumor CPT0241170006 203219650221_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8ce26bdc-7a50-47bf-9d7b-d6081c5c1fa8 a3c68eadc0493edd1794551f8d727782 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.MethArray.Red.A C3N-02435 LSCC Methylation_Array tissue_normal CPT0241210006 203219650100_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 faa07d5f-f7c2-46b9-8647-6cca2cfbcd6d 8e3f78ac8e870b1b1901873a7d27d1d1 {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.MethArray.Red.T C3N-02435 LSCC Methylation_Array tumor CPT0241170006 203219650221_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 a0713c08-73d6-465a-9a1d-1d85a7c03550 2fad21b0c723b61eca17a922deb3bb0f {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.miRNA-Seq.A.hg38 C3N-02435 LSCC miRNA-Seq tissue_normal CPT0241210009 6b0b56b1-c48f-48b2-a88b-b1ce05a81c46_mirnaseq_gdc_realn.bam 233009484 BAM harmonized CPTAC3 2641b8f2-35c8-4c37-8b56-f634a099cd29 b7b04a1044158cdca754a7be996d66d6 {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.miRNA-Seq.S27_L004_R1.A C3N-02435 LSCC miRNA-Seq tissue_normal CPT0241210009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGTACG_S27_L004_R1_001.unaln.bam 212207280 BAM S27_L004_R1 submitted_unaligned CPTAC3 30a19209-3e49-4213-9511-d2abecf6a8b5 1d23dfc2e5ff33f5597887616e42f9b3 {"aliquot_tag": "ALQ_1d78421a", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.miRNA-Seq.S28_L004_R1.T C3N-02435 LSCC miRNA-Seq tumor CPT0241170009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTTTCG_S28_L004_R1_001.unaln.bam 154164749 BAM S28_L004_R1 submitted_unaligned CPTAC3 2c8cba02-fd00-455e-b546-be85bb4b9d45 cc391d1af84019e4d01a131ae74a65ea {"aliquot_tag": "ALQ_14acc514", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.miRNA-Seq.T.hg38 C3N-02435 LSCC miRNA-Seq tumor CPT0241170009 d02b2b71-63c2-4fe5-a4b6-3d52de3a9c50_mirnaseq_gdc_realn.bam 168841124 BAM harmonized CPTAC3 3d416495-ceff-4c79-9266-79a62e270d3a 4ae0fa5e5d14f4c8be27d7bcf7e6008d {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.RNA-Seq.chimeric.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.chimeric.gdc_realn.bam 302038237 BAM chimeric harmonized CPTAC3 aa503442-8865-48ba-b7e9-0d03019e5b7d e6a77420051fc7f62bb6ecda53e26f6e {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.RNA-Seq.chimeric.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.chimeric.gdc_realn.bam 296778463 BAM chimeric harmonized CPTAC3 0ed107db-fa7f-4ba7-be1c-9c820819fb81 ea8d0ac35894fff911922ffc563a7c16 {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.RNA-Seq.genomic.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.genomic.gdc_realn.bam 9269548211 BAM genomic harmonized CPTAC3 b8b2ea67-f831-4e36-bfbe-014adcfd8b5c 248c249e23d510b429e93477b0aa270d {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.RNA-Seq.genomic.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.genomic.gdc_realn.bam 9375784424 BAM genomic harmonized CPTAC3 ce605d0c-e456-471e-8286-04a112a9b1cd 92db97c45307a1e25e38d37a9fbc6710 {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.RNA-Seq.S12_L003_R1.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R1_001.fastq.gz 4004442576 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 2ae41c77-a9e6-4e72-960c-79883d3f8a7a 5b3614b25db15b58e485aa94471a5961 {"aliquot_tag": "ALQ_14acc514", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.RNA-Seq.S12_L003_R2.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R2_001.fastq.gz 4382828351 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 e1bc8ef8-d51f-4002-825a-29d546892fb6 ad8c8a496b599b819e553659a721cb01 {"aliquot_tag": "ALQ_14acc514", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.RNA-Seq.S14_L004_R1.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3993610118 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 059287d2-82b3-416e-80f3-9b010e3a1ad9 10aa3cc299ab8b37d10535a769901e59 {"aliquot_tag": "ALQ_1d78421a", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.RNA-Seq.S14_L004_R2.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 4446131135 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 62eb563b-67c2-4331-93da-f1b672fcc577 72721d3d85227577e73186f9f1406815 {"aliquot_tag": "ALQ_1d78421a", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.RNA-Seq.transcriptome.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.transcriptome.gdc_realn.bam 8904478202 BAM transcriptome harmonized CPTAC3 31785b3a-0f70-4a68-a16c-9a052ef03d50 d812ab5f765e5c6966d54d25b96b09b5 {"aliquot_tag": "ALQ_1d78421a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.RNA-Seq.transcriptome.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.transcriptome.gdc_realn.bam 8502010166 BAM transcriptome harmonized CPTAC3 b825a72a-b9d8-46ff-a002-93d2be1ba0b6 3b34101e567cd2f9e7cfb4157de80ce3 {"aliquot_tag": "ALQ_14acc514", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.WGS.N C3N-02435 LSCC WGS blood_normal CPT0241820002 CPT0241820002.WholeGenome.RP-1303.bam 133068421000 BAM submitted_aligned CPTAC3 5cf68ed0-ccaf-4ba7-b534-62d2978fbba1 b9dde028089ba307c8b848774428acd5 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02435.WGS.N.hg38 C3N-02435 LSCC WGS blood_normal CPT0241820002 0bae0fae-6a3e-4fb0-a80f-1bf415e72b5e_wgs_gdc_realn.bam 192299604099 BAM harmonized CPTAC3 04c389c7-e942-48a7-b22d-c85ede5ecc77 980d88457a446dafbe3a1d59eec00009 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02435.WGS.T C3N-02435 LSCC WGS tumor CPT0241170006 CPT0241170006.WholeGenome.RP-1303.bam 54140669613 BAM submitted_aligned CPTAC3 89f4f6aa-e232-4958-8bb6-eca2619e9cf7 3548af3a7bd1bafb6df4a589c32b5493 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.WGS.T.hg38 C3N-02435 LSCC WGS tumor CPT0241170006 cba5b303-2d15-4b89-af40-deb7918cef18_wgs_gdc_realn.bam 77964146155 BAM harmonized CPTAC3 d0a70378-c8ef-4ef6-bb97-2968ea615766 515f0b707d9994af7932cb3989432904 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.WXS.A C3N-02435 LSCC WXS tissue_normal CPT0241210006 CPT0241210006.WholeExome.RP-1303.bam 21913606523 BAM submitted_aligned CPTAC3 a171ed09-7a45-4143-a78f-7c6b54698651 db62624d53eda8fc9fa86b546450727d {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.WXS.A.hg38 C3N-02435 LSCC WXS tissue_normal CPT0241210006 d9e75637-0a3b-4e37-bd3b-11433221acba_wxs_gdc_realn.bam 30765532578 BAM harmonized CPTAC3 406ccf72-b046-4b2b-b5ef-e836a8a74a1c a2d0e932040762f197a4af5d8ba4ebac {"aliquot_tag": "ALQ_8dc75f8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02435.WXS.N C3N-02435 LSCC WXS blood_normal CPT0241820002 CPT0241820002.WholeExome.RP-1303.bam 25100432254 BAM submitted_aligned CPTAC3 0da0f869-5945-44f4-af6f-c984936f293d 507f703fcbbacea7fd0171870be7a544 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02435.WXS.N.hg38 C3N-02435 LSCC WXS blood_normal CPT0241820002 0bae0fae-6a3e-4fb0-a80f-1bf415e72b5e_wxs_gdc_realn.bam 34941809237 BAM harmonized CPTAC3 db1c4701-ae3b-45fa-a6aa-6c6356cac883 4b0d885181ea4d61f090b45c2aece8a2 {"aliquot_tag": "ALQ_6c91c224", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02435.WXS.T C3N-02435 LSCC WXS tumor CPT0241170006 CPT0241170006.WholeExome.RP-1303.bam 24525040420 BAM submitted_aligned CPTAC3 8f46c578-c0d9-466c-a717-c12bc3bc1bc7 6cad12dbce20a096d3c396dceabaf289 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02435.WXS.T.hg38 C3N-02435 LSCC WXS tumor CPT0241170006 cba5b303-2d15-4b89-af40-deb7918cef18_wxs_gdc_realn.bam 33864761049 BAM harmonized CPTAC3 08c58f05-9147-411b-af8e-ebc2ff60f56b af2fc030caa2d150aa6c867413166923 {"aliquot_tag": "ALQ_8413d885", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02436.MethArray.Green.T C3N-02436 UCEC Methylation_Array tumor CPT0115530009 203219640095_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c2b6d56d-b218-4835-9d2a-c0ce563442a6 ca1179c5ed7dc04133c5a369b0a571a6 {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.MethArray.Red.T C3N-02436 UCEC Methylation_Array tumor CPT0115530009 203219640095_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 2b08f5eb-efad-4490-bf5e-cd3526530293 501be75d9f29a0de403fe2d3ead319c4 {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.miRNA-Seq.A.hg38 C3N-02436 UCEC miRNA-Seq tissue_normal CPT0115570006 7f73650f-20da-4a82-b1eb-f44b4b7375bf_mirnaseq_gdc_realn.bam 404129305 BAM harmonized CPTAC3 d41abdfb-30a9-431c-95e1-76f831208535 f2b1471195a54cb83455dfe3001d7712 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.miRNA-Seq.S19_L002_R1.T C3N-02436 UCEC miRNA-Seq tumor CPT0115530006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGAAA_S19_L002_R1_001.unaln.bam 159919242 BAM S19_L002_R1 submitted_unaligned CPTAC3 1d3db87c-11c3-49a6-b119-e4ec35a1bb79 b38bfc87e541876f2eeaa934124b4814 {"aliquot_tag": "ALQ_6f202ae1", "sample": "S19", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.miRNA-Seq.S33_L003_R1.A C3N-02436 UCEC miRNA-Seq tissue_normal CPT0115570006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L003_R1_001.unaln.bam 360985718 BAM S33_L003_R1 submitted_unaligned CPTAC3 f530fc5e-c188-4ee2-baad-3f60982eaaaa 9162e5c6a320c8f8011eace7500c833d {"aliquot_tag": "ALQ_9aa08c21", "sample": "S33", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.miRNA-Seq.T.hg38 C3N-02436 UCEC miRNA-Seq tumor CPT0115530006 ba6f79b4-70d3-4c47-8e72-1310df42fc71_mirnaseq_gdc_realn.bam 174974061 BAM harmonized CPTAC3 a8f9cfcc-8719-4a9c-9fe0-e0b973497a67 930808f0679a518b494785e44cb5c6a4 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.chimeric.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.chimeric.gdc_realn.bam 144619189 BAM chimeric harmonized CPTAC3 cc1ac09b-5bab-49b4-b890-9a8bc837884d 587c0bbb9d9fb6466b9ce60377f2fcb6 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.RNA-Seq.chimeric.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.chimeric.gdc_realn.bam 27379161 BAM chimeric harmonized CPTAC3 6a86ed40-20b7-4cfc-871c-68c2fbfde9a6 11988330c1a553015eb3de3d3b20b454 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.chimeric.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.chimeric.gdc_realn.bam 15813858 BAM chimeric harmonized CPTAC3 efa83d32-ec21-4b18-873f-2c7bfd073d9a fc43679059f5b049e4876a7c57637f77 {"aliquot_tag": "ALQ_86948e53", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.genomic.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.genomic.gdc_realn.bam 9195871656 BAM genomic harmonized CPTAC3 d5cdea35-6c75-408b-aae9-14a23ca6dddb b1f4a7c9d4913b8a09bc75915208cc42 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.RNA-Seq.genomic.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.genomic.gdc_realn.bam 8899833740 BAM genomic harmonized CPTAC3 9d6e8b5e-9eec-42f7-9edc-035311c8f85f 90d70719e9ffa583c698a2c10942cee2 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.genomic.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.genomic.gdc_realn.bam 5124499507 BAM genomic harmonized CPTAC3 6557b425-07f4-4448-b5d0-b608e94bf3c6 5dedff6f010c937289dbe6fa95aef150 {"aliquot_tag": "ALQ_86948e53", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.S14_L006_R1.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R1_001.fastq.gz 4086354403 FASTQ S14_L006_R1 submitted_unaligned CPTAC3 7b1e901e-65c0-4029-986e-a12d2087b8a9 4a3fe34ccec30993397ea0e6864d1a75 {"aliquot_tag": "ALQ_9aa08c21", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.RNA-Seq.S14_L006_R2.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R2_001.fastq.gz 4343787238 FASTQ S14_L006_R2 submitted_unaligned CPTAC3 86af161a-1571-472a-abf6-52fa762aa073 8c1147aeed65d79cfff955b2c9a34694 {"aliquot_tag": "ALQ_9aa08c21", "sample": "S14", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.RNA-Seq.S21_L006_R1.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 3913669967 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 98abadbd-a89b-4179-9fbd-4f881c729e34 af8be990f46ef49da25c07cf430e37fb {"aliquot_tag": "ALQ_6f202ae1", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.S21_L006_R2.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4264446424 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 7e9715d5-2977-4cf1-ac8b-6e18ab2389a6 abc04db6c2366751e30bac28c1745161 {"aliquot_tag": "ALQ_6f202ae1", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.S44_R1.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R1_001.fastq.gz 2568256890 FASTQ S44_R1 submitted_unaligned CPTAC3 d48c4ff4-b2bb-498d-b822-111bab49fc55 771102906a8c6f1e12e5b6c9f9e279da {"aliquot_tag": "ALQ_86948e53", "sample": "S44", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.S44_R2.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R2_001.fastq.gz 2844079303 FASTQ S44_R2 submitted_unaligned CPTAC3 55a032f3-1dea-41b8-93ab-c1e4515ebd4a e04acfd4377ec0aa5c906f49a33fd76c {"aliquot_tag": "ALQ_86948e53", "sample": "S44", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.transcriptome.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.transcriptome.gdc_realn.bam 11137195544 BAM transcriptome harmonized CPTAC3 df291048-b089-45b5-acfb-4d9aca42123c 3ce14de9ace98c35b6ffc8e4a8f845a2 {"aliquot_tag": "ALQ_9aa08c21", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.RNA-Seq.transcriptome.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.transcriptome.gdc_realn.bam 10258279204 BAM transcriptome harmonized CPTAC3 475f4ae0-c951-4460-9f30-be3dd694e2b6 fbb89ffba7486590304564158eb7a3b5 {"aliquot_tag": "ALQ_6f202ae1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.RNA-Seq.transcriptome.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.transcriptome.gdc_realn.bam 4002843912 BAM transcriptome harmonized CPTAC3 a35fd3c4-103c-4912-86a6-e68d9c7b8a32 9183bc74305d9216a1e3221533011efc {"aliquot_tag": "ALQ_86948e53", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.WGS.N C3N-02436 UCEC WGS blood_normal CPT0116420002 CPT0116420002.WholeGenome.RP-1303.bam 116369232209 BAM submitted_aligned CPTAC3 f762e07b-fe88-4716-b19f-d6e7eccdbbca add901edef0460b58267c390fbea14ef {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02436.WGS.N.hg38 C3N-02436 UCEC WGS blood_normal CPT0116420002 ff40e1c4-0a27-4520-98fb-a6785a90c2cf_wgs_gdc_realn.bam 166822187937 BAM harmonized CPTAC3 594f99b7-c9f2-421b-a08a-2e5f131d16ef 1ed6bd72b827c193e01ec260dbccd39b {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02436.WGS.T C3N-02436 UCEC WGS tumor CPT0115530009 CPT0115530009.WholeGenome.RP-1303.bam 103002774208 BAM submitted_aligned CPTAC3 d47fa50c-acd4-45fe-a531-d3e78fadfcfe a2ce089470527d6d17e7dd2342b53a9c {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.WGS.T.hg38 C3N-02436 UCEC WGS tumor CPT0115530009 0832099e-db54-43c7-9801-d45f66a09d9d_wgs_gdc_realn.bam 148484711610 BAM harmonized CPTAC3 8e7277c3-d3a5-4bd0-9aa8-96fe8333310e 73f92357f4be1d105cb0e90ca4a36899 {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.WXS.A C3N-02436 UCEC WXS tissue_normal CPT0115570009 CPT0115570009.WholeExome.RP-1303.bam 18057009456 BAM submitted_aligned CPTAC3 a0737fd4-d214-4c38-b2c7-6f9d9806ce34 da9bf9d925512aedad6e13b583c22a0c {"aliquot_tag": "ALQ_a1f91b0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.WXS.A.hg38 C3N-02436 UCEC WXS tissue_normal CPT0115570009 6ebd882f-3982-46ed-b633-12077b6bab88_wxs_gdc_realn.bam 24883837055 BAM harmonized CPTAC3 9cdfe959-fec9-44a9-b38b-f4d9d7f26c5a e7350a256283245bd1244b40a6666230 {"aliquot_tag": "ALQ_a1f91b0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02436.WXS.N C3N-02436 UCEC WXS blood_normal CPT0116420002 CPT0116420002.WholeExome.RP-1303.bam 33469897941 BAM submitted_aligned CPTAC3 3625e91d-c266-47c9-aee9-21f65aa3fdaa d856a52b651312bd73fbfb428465f9d7 {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02436.WXS.N.hg38 C3N-02436 UCEC WXS blood_normal CPT0116420002 ff40e1c4-0a27-4520-98fb-a6785a90c2cf_wxs_gdc_realn.bam 45525014072 BAM harmonized CPTAC3 c77c58c0-ad54-45c9-88c8-f7f32f143b03 40728c77a8bc3ce1861554805aabdfb8 {"aliquot_tag": "ALQ_af990e70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02436.WXS.T C3N-02436 UCEC WXS tumor CPT0115530009 CPT0115530009.WholeExome.RP-1303.bam 23724506810 BAM submitted_aligned CPTAC3 8b7bcad5-5925-438d-a6cb-a785f2d7e576 d1b7b3793fbc957e9f2d0d397ea6e47e {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02436.WXS.T.hg38 C3N-02436 UCEC WXS tumor CPT0115530009 0832099e-db54-43c7-9801-d45f66a09d9d_wxs_gdc_realn.bam 32481555958 BAM harmonized CPTAC3 fec93555-caa1-485d-9f10-2d870c0d103d 26b1e8002c6b13434c3ff4daeac9ffae {"aliquot_tag": "ALQ_ff9f3770", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.MethArray.Green.T C3N-02437 UCEC Methylation_Array tumor CPT0159110006 203561450030_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 958e543a-5ba2-43cc-b836-59ae9cdab8a6 174e861bc8bab9493c142301688ae5c2 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.MethArray.Red.T C3N-02437 UCEC Methylation_Array tumor CPT0159110006 203561450030_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 33f3e4b0-6bed-44d4-b53f-9eec79316274 32fbe7811a21a0363f459a13c2ee7337 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.miRNA-Seq.S39_L002_R1.T C3N-02437 UCEC miRNA-Seq tumor CPT0159110009 190813_UNC32-K00270_0196_AH5MCWBBXY_TAGCTT_S39_L002_R1_001.unaln.bam 227191491 BAM S39_L002_R1 submitted_unaligned CPTAC3 84e4aa80-6aee-40f6-9b82-7871ecf8ae6f 9dc6c0c1ad6982a2239ea082b56ffacf {"aliquot_tag": "ALQ_5d244288", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.miRNA-Seq.T.hg38 C3N-02437 UCEC miRNA-Seq tumor CPT0159110009 5997a677-3d7e-4808-8cac-70ed7e1ab7da_mirnaseq_gdc_realn.bam 252701774 BAM harmonized CPTAC3 683a8997-23f0-421a-a685-f807625220bd ba605af2c79c6588cb2f544f605343ff {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.chimeric.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.chimeric.gdc_realn.bam 36318079 BAM chimeric harmonized CPTAC3 4f0fb03b-3165-4ac3-99ca-cdf3aa656574 11012bfa810800b6a2afaa4b9d771899 {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.chimeric.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.chimeric.gdc_realn.bam 83538249 BAM chimeric harmonized CPTAC3 207415b4-fb43-40ae-b244-d888154ccc9a 16facd1f96bb303fafd8b277f24ff83a {"aliquot_tag": "ALQ_a67f6c7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.genomic.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.genomic.gdc_realn.bam 8668660421 BAM genomic harmonized CPTAC3 f0b83b4a-792a-4298-a457-fa7232df1123 cd8031e335e32414981f592014b75654 {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.genomic.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.genomic.gdc_realn.bam 5133664645 BAM genomic harmonized CPTAC3 1525af9f-c923-45c0-8fda-cbe8cd623108 438f781c68b613da7f2a611edc00bdc3 {"aliquot_tag": "ALQ_a67f6c7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.S4_L001_R1.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R1_001.fastq.gz 4294390025 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 a38f130e-be87-4a00-a7a7-03f323dadcad fdbc2249bf7c2b08276e05496afbf920 {"aliquot_tag": "ALQ_5d244288", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.S4_L001_R2.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R2_001.fastq.gz 4570939348 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 be404685-99b5-4648-aeb9-987f1ed14889 f690267d63775a5b63ba4aa9eebeb3d5 {"aliquot_tag": "ALQ_5d244288", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.S62_R1.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R1_001.fastq.gz 3264092318 FASTQ S62_R1 submitted_unaligned CPTAC3 cf132ccc-3ddf-411e-9677-318419393932 b7f1c7a52dc65c68d0590609c614c4ab {"aliquot_tag": "ALQ_a67f6c7a", "sample": "S62", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.S62_R2.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R2_001.fastq.gz 3374962760 FASTQ S62_R2 submitted_unaligned CPTAC3 5d413923-0466-4bf0-ad34-e51e6503ee33 60208a80c0102dec9dc7cdb023888933 {"aliquot_tag": "ALQ_a67f6c7a", "sample": "S62", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.transcriptome.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.transcriptome.gdc_realn.bam 10464729833 BAM transcriptome harmonized CPTAC3 12e3f212-5773-4a93-bbb4-80918a0ec4e2 ee372c5230295a4beebb377b23ce95ad {"aliquot_tag": "ALQ_5d244288", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.RNA-Seq.transcriptome.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.transcriptome.gdc_realn.bam 2111740819 BAM transcriptome harmonized CPTAC3 157d2dda-c5cd-4748-bd82-68a3c21dce1e 4acc58f1fbddb25f46f647cc2f2c2708 {"aliquot_tag": "ALQ_a67f6c7a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.WGS.N C3N-02437 UCEC WGS blood_normal CPT0159380002 CPT0159380002.WholeGenome.RP-1303.bam 67000945760 BAM submitted_aligned CPTAC3 1df3b945-136c-4c56-9dbf-c91c5e756d71 cac294e2ca19b9d83695762b06f111ee {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02437.WGS.N.hg38 C3N-02437 UCEC WGS blood_normal CPT0159380002 1f6a7fcf-9360-4258-90e2-daddece83775_wgs_gdc_realn.bam 97354995064 BAM harmonized CPTAC3 06466397-79c9-4f12-8b65-3371db9d467d 30da521dff0600f73f3585d4429edaf1 {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02437.WGS.T C3N-02437 UCEC WGS tumor CPT0159110006 CPT0159110006.WholeGenome.RP-1303.bam 74315837136 BAM submitted_aligned CPTAC3 6d1ab595-a870-4df4-9a0d-90c43c5b7a16 869bd5b697fd02dfc10307a5c5facf7b {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.WGS.T.hg38 C3N-02437 UCEC WGS tumor CPT0159110006 54c1398f-d9ab-492a-8a17-befada12bd65_wgs_gdc_realn.bam 108365712021 BAM harmonized CPTAC3 cfdecd30-b509-43fc-b9ee-4a7a9f4bffb6 7d6e7a13fff52cb1fc6b387d5c0d41d7 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.WXS.N C3N-02437 UCEC WXS blood_normal CPT0159380002 CPT0159380002.WholeExome.RP-1303.bam 24127372414 BAM submitted_aligned CPTAC3 bb2a4790-ccda-4016-b029-21a2d86d5703 733b9d2f8f4c163e8befa110285ebe54 {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02437.WXS.N.hg38 C3N-02437 UCEC WXS blood_normal CPT0159380002 1f6a7fcf-9360-4258-90e2-daddece83775_wxs_gdc_realn.bam 33113527885 BAM harmonized CPTAC3 8ab04662-de4c-4ccc-b6ed-6a863f04d797 acba8def61bbb1db9137861dad89c4e7 {"aliquot_tag": "ALQ_8a2e587a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02437.WXS.T C3N-02437 UCEC WXS tumor CPT0159110006 CPT0159110006.WholeExome.RP-1303.bam 20802155363 BAM submitted_aligned CPTAC3 e0af140c-86cb-4871-aec7-10df5fd70127 34de8c1064e1325403f35a1766ad0e47 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02437.WXS.T.hg38 C3N-02437 UCEC WXS tumor CPT0159110006 54c1398f-d9ab-492a-8a17-befada12bd65_wxs_gdc_realn.bam 28587377981 BAM harmonized CPTAC3 2891d126-06da-4330-be99-7efcd22ab30a 37b89703323fe87f55bd53feac197683 {"aliquot_tag": "ALQ_cd9b5f19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02439.MethArray.Green.A C3N-02439 CCRCC Methylation_Array tissue_normal CPT0158690006 204930640041_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f5c117b3-9bec-4971-b3d2-e5254073fdb1 1c2fb8c50570b9b7fbaafde369dbfe6c {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.MethArray.Green.T C3N-02439 CCRCC Methylation_Array tumor CPT0158660009 203219650065_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 8a9d06f3-2971-4401-a6fe-c53a83708263 658250829263e86ea58da66f3027ef9f {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.MethArray.Red.A C3N-02439 CCRCC Methylation_Array tissue_normal CPT0158690006 204930640041_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 8d0bf732-2217-4953-9a28-58feba38d197 62f4ae4079b98b9e43dcec7005b44ae3 {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.MethArray.Red.T C3N-02439 CCRCC Methylation_Array tumor CPT0158660009 203219650065_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 e8bc683a-d923-4ba0-a859-2603b6ef48e6 2ff3d75b64ef1afcbfb53afe20445cd3 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.miRNA-Seq.A.hg38 C3N-02439 CCRCC miRNA-Seq tissue_normal CPT0158690009 1329c35a-325a-43e9-8817-b401f79c6aba_mirnaseq_gdc_realn.bam 192847986 BAM harmonized CPTAC3 7989798c-deac-41d2-ae9a-9dce3bb624f5 9e582243ea85710005e0135d98f6a8f5 {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.miRNA-Seq.S19_L002_R1.A C3N-02439 CCRCC miRNA-Seq tissue_normal CPT0158690009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L002_R1_001.unaln.bam 176697886 BAM S19_L002_R1 submitted_unaligned CPTAC3 34dde28b-85ac-45b6-84f6-1aec7f206c2d fde36a1d69b420a7e56896c805e90330 {"aliquot_tag": "ALQ_d6263245", "sample": "S19", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.miRNA-Seq.S41_L005_R1.T C3N-02439 CCRCC miRNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0176_AHYGLVBBXX_GACGAC_S41_L005_R1_001.unaln.bam 209572539 BAM S41_L005_R1 submitted_unaligned CPTAC3 996a807e-c2bb-4119-81d8-7d854343988d 3c28a4aec331a95b21b80088571f747f {"aliquot_tag": "ALQ_c4c9b805", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.miRNA-Seq.T.hg38 C3N-02439 CCRCC miRNA-Seq tumor CPT0158660006 f10d622b-2e99-4231-a592-f2f8f13640e5_mirnaseq_gdc_realn.bam 230671961 BAM harmonized CPTAC3 57205c90-1352-44f4-9c59-f8ebc3719b38 c7c828fc63c02d6c8ea6c7ad083088e1 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.RNA-Seq.chimeric.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.chimeric.gdc_realn.bam 58625985 BAM chimeric harmonized CPTAC3 6d053d0b-4acf-42ad-a821-1c50fa04b48a 93b3595e9895c14bfe74a7be6fa5492e {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.RNA-Seq.chimeric.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.chimeric.gdc_realn.bam 62862523 BAM chimeric harmonized CPTAC3 7c8943f5-2db6-40d7-8f52-beb2b9fa10d6 8e75d2da917c7c3551bba796678b2d93 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.RNA-Seq.genomic.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.genomic.gdc_realn.bam 8314618545 BAM genomic harmonized CPTAC3 9326fe61-f88a-448f-9901-39ac823292bb 8e1607d2878a6484f97f8bb439a0b4d7 {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.RNA-Seq.genomic.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.genomic.gdc_realn.bam 8813156660 BAM genomic harmonized CPTAC3 6a595bdf-0dc3-4a76-a1ac-22b019891ec5 122dd0d315a138d19c85e53cbef22ea6 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.RNA-Seq.S18_L007_R1.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R1_001.fastq.gz 3424139828 FASTQ S18_L007_R1 submitted_unaligned CPTAC3 a4d1b56c-a881-4b63-85d6-f09a496fe9d0 2b06944878755ba7a450d52d1598d4f8 {"aliquot_tag": "ALQ_d6263245", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.RNA-Seq.S18_L007_R2.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R2_001.fastq.gz 3597530871 FASTQ S18_L007_R2 submitted_unaligned CPTAC3 51c2c085-8016-4881-a8a1-4cdb23625895 279310e5f666157f9b6660972d2cd19d {"aliquot_tag": "ALQ_d6263245", "sample": "S18", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.RNA-Seq.S23_L006_R1.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4159334660 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 b97e543a-4798-40cb-9eba-9fb31606ba14 55e803e556ce1b099dc50783e3c3cde4 {"aliquot_tag": "ALQ_c4c9b805", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.RNA-Seq.S23_L006_R2.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4327501541 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 768908dd-e3a0-41a4-b8ab-299b79a254af a95ea1888209ca2458e5b824776593dc {"aliquot_tag": "ALQ_c4c9b805", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.RNA-Seq.transcriptome.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.transcriptome.gdc_realn.bam 8021047492 BAM transcriptome harmonized CPTAC3 fdda16cc-8024-4b6d-bdbf-feb2862e6f6e 3ccf42e903a89110f30a2c526461dc06 {"aliquot_tag": "ALQ_d6263245", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.RNA-Seq.transcriptome.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.transcriptome.gdc_realn.bam 10770900272 BAM transcriptome harmonized CPTAC3 4b2d37d4-665a-4b75-bea8-2f03a56be719 cf53e88a7b8f4ac688dce741906baee2 {"aliquot_tag": "ALQ_c4c9b805", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.WGS.N C3N-02439 CCRCC WGS blood_normal CPT0159410002 CPT0159410002.WholeGenome.RP-1303.bam 89426794434 BAM submitted_aligned CPTAC3 94e23d33-c558-4d1a-9ec9-19a3f2e60ed9 c7aeb0eb18c6d7ce4164dc241b6ee34a {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02439.WGS.N.hg38 C3N-02439 CCRCC WGS blood_normal CPT0159410002 849f9c8e-68f7-4be8-95ee-b70828ffa713_wgs_gdc_realn.bam 130294297028 BAM harmonized CPTAC3 d10fd5bf-edb1-45ef-b18c-d4fd21fbb373 676640c7d5989b593c68b2fd9f994807 {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02439.WGS.T C3N-02439 CCRCC WGS tumor CPT0158660009 CPT0158660009.WholeGenome.RP-1303.bam 101708607952 BAM submitted_aligned CPTAC3 09516bc6-155a-4054-b973-0f45334fa533 5b74b40c63221966a90fe8e0bdb421a9 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.WGS.T.hg38 C3N-02439 CCRCC WGS tumor CPT0158660009 25d28a81-9e72-428c-abe3-bdcd5cbea42f_wgs_gdc_realn.bam 145645453113 BAM harmonized CPTAC3 95c64732-7946-44e8-af75-4590cc70afff bc53ad4c4078327b1ebfbd43e7008271 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.WXS.A C3N-02439 CCRCC WXS tissue_normal CPT0158690006 CPT0158690006.WholeExome.RP-1303.bam 27056299287 BAM submitted_aligned CPTAC3 383a0876-d8f4-46a7-91cb-e192d4449074 7dfbf10941f05b3cf06dea88bcea8a08 {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.WXS.A.hg38 C3N-02439 CCRCC WXS tissue_normal CPT0158690006 8b783c1c-16bf-4e52-a417-db3b874da7df_wxs_gdc_realn.bam 37778959345 BAM harmonized CPTAC3 d369f8d9-1a1d-4c87-84a6-018f88e7c9f4 2060c633c56891fd7948961ddd0cc820 {"aliquot_tag": "ALQ_46992fd4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02439.WXS.N C3N-02439 CCRCC WXS blood_normal CPT0159410002 CPT0159410002.WholeExome.RP-1303.bam 26175805260 BAM submitted_aligned CPTAC3 40800be4-865a-424c-b4a7-2f28add847f3 9633128a120393c0d651ec9767aebcc4 {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02439.WXS.N.hg38 C3N-02439 CCRCC WXS blood_normal CPT0159410002 849f9c8e-68f7-4be8-95ee-b70828ffa713_wxs_gdc_realn.bam 36082572964 BAM harmonized CPTAC3 712bc7b9-75e0-4304-960f-7f061a2a215a cb8c884149265bc97ccb2916c2834157 {"aliquot_tag": "ALQ_9a3b0ab3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02439.WXS.T C3N-02439 CCRCC WXS tumor CPT0158660009 CPT0158660009.WholeExome.RP-1303.bam 31305591528 BAM submitted_aligned CPTAC3 2493549e-7df2-4666-b875-1ecda7e5b484 1df1b1a8b498be2905c8e37d3cfa09ee {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02439.WXS.T.hg38 C3N-02439 CCRCC WXS tumor CPT0158660009 25d28a81-9e72-428c-abe3-bdcd5cbea42f_wxs_gdc_realn.bam 43193560088 BAM harmonized CPTAC3 86856fed-b8ba-4323-8609-5d4466f67934 606f03b5524a07e8c2909b1f5d8a06c6 {"aliquot_tag": "ALQ_5476a594", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02440.MethArray.Green.A C3N-02440 CCRCC Methylation_Array tissue_normal CPT0384450009 205589740002_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a96cf6e7-b028-4d09-8cfd-cac9b13952a1 698578cd5da0dbecfe72bcd14281ce43 {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.MethArray.Green.T C3N-02440 CCRCC Methylation_Array tumor CPT0384430009 205549600088_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9460ef08-e4de-49f1-a077-5f3b7218e5c4 4ccc0cba98dfd5c2d151d0d83ffea07b {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.MethArray.Red.A C3N-02440 CCRCC Methylation_Array tissue_normal CPT0384450009 205589740002_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 e0132987-79a6-482a-8d21-65e065facfc6 aea586791d28e34ee028b4ac3f2ffc16 {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.MethArray.Red.T C3N-02440 CCRCC Methylation_Array tumor CPT0384430009 205549600088_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 8f357c49-d9e5-4bde-82ab-b7c4a8828524 9287d18703887df9fc5c11463aaa1c55 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.miRNA-Seq.A.hg38 C3N-02440 CCRCC miRNA-Seq tissue_normal CPT0384450006 5cce5a45-4a8f-471b-b5d9-a9cf6066c7b4_mirnaseq_gdc_realn.bam 274069205 BAM harmonized CPTAC3 7d790060-8336-4131-83cf-b9ea71e9f02c 7969c36f10f448cf18902c0f553c0ba1 {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.miRNA-Seq.S15_L001_R1.A C3N-02440 CCRCC miRNA-Seq tissue_normal CPT0384450006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTAGAG_S15_L001_R1_001.unaln.bam 251548640 BAM S15_L001_R1 submitted_unaligned CPTAC3 475c5715-3ece-46bb-8664-d4e45bd47377 cc80ec04402749d0b7ca261ba2a4f8cc {"aliquot_tag": "ALQ_bcf234fd", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.miRNA-Seq.S9_L001_R1.T C3N-02440 CCRCC miRNA-Seq tumor CPT0384430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CCGTCC_S9_L001_R1_001.unaln.bam 221068064 BAM S9_L001_R1 submitted_unaligned CPTAC3 8435d16f-7017-4c00-91fa-f47f068729e0 6c2fda5972845582a3e8ae4afbcdbb75 {"aliquot_tag": "ALQ_33b2c15d", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.miRNA-Seq.T.hg38 C3N-02440 CCRCC miRNA-Seq tumor CPT0384430006 f3600bfc-6584-4b88-a730-dbbde7a398d5_mirnaseq_gdc_realn.bam 236067606 BAM harmonized CPTAC3 d89e7ee7-fffe-4205-a3ce-fe41093bff94 76f405575c8cc1190740a0fd623f3d8a {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.RNA-Seq.chimeric.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.chimeric.gdc_realn.bam 233467565 BAM chimeric harmonized CPTAC3 bac222af-580c-4cd4-b114-3ebea02c3602 9241c8fb0abc39878e0c99944f241e67 {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.RNA-Seq.chimeric.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.chimeric.gdc_realn.bam 277230342 BAM chimeric harmonized CPTAC3 947f5515-788a-42b3-a201-f56c2eefa45b 5d8e403ff9239cdb982b5bb896705ad8 {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.RNA-Seq.genomic.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.genomic.gdc_realn.bam 7695730481 BAM genomic harmonized CPTAC3 41dbdd23-822e-4766-b0cd-29eba0bec105 59d01c2ac4f59611ce91642dddfc4d27 {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.RNA-Seq.genomic.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.genomic.gdc_realn.bam 7517816932 BAM genomic harmonized CPTAC3 d6e91e66-b4fd-4fdd-a543-c624f76855cc d223d56797f953442887329bf49cab0b {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.RNA-Seq.S20_L005_R1.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R1_001.fastq.gz 3600454699 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 c2dd4f3c-2485-4261-ab43-204060ae3cae a103e5f3d96a257e92d6638a0df9fee6 {"aliquot_tag": "ALQ_bcf234fd", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.RNA-Seq.S20_L005_R2.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R2_001.fastq.gz 4024417229 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 26c6d14a-5527-4d67-8db0-99ad8b185bb2 8576ca8a40d5c4dc1ba195d4c2b2c44d {"aliquot_tag": "ALQ_bcf234fd", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.RNA-Seq.S21_L006_R1.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 3512128406 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 5b06be3c-4cc7-4db2-a5f3-d3edec4342a9 e66ebd3cb2c193e13c4cd40f8f0e4351 {"aliquot_tag": "ALQ_33b2c15d", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.RNA-Seq.S21_L006_R2.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 3963528862 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 76acf7f1-0f9b-44fd-aa16-d5fe1d950e88 3163f1ab77f9e16ebc72787df5f2614e {"aliquot_tag": "ALQ_33b2c15d", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.RNA-Seq.transcriptome.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.transcriptome.gdc_realn.bam 9065523905 BAM transcriptome harmonized CPTAC3 c09a923f-0cf9-4455-aa4b-d932cb3ee0ee f29f8cefc5729cee7df422ad6547543d {"aliquot_tag": "ALQ_bcf234fd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.RNA-Seq.transcriptome.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.transcriptome.gdc_realn.bam 8088195156 BAM transcriptome harmonized CPTAC3 b10ff494-9003-43b9-b6e9-6afdb0e9a7a0 051f734ff4f16d7b2d79a20018e6ca3c {"aliquot_tag": "ALQ_33b2c15d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.WGS.N C3N-02440 CCRCC WGS blood_normal CPT0385420002 CPT0385420002.WholeGenome.RP-2158.bam 28558429313 BAM submitted_aligned CPTAC3 027650de-1b5e-4b01-a665-579116df779f f7c0996f99855e642ff948e65c0fc461 {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02440.WGS.N.hg38 C3N-02440 CCRCC WGS blood_normal CPT0385420002 b3cc5d3f-c66e-48ff-9bfc-b2b4cebe13d4_wgs_gdc_realn.bam 86299120355 BAM harmonized CPTAC3 af990cca-8c0a-4590-a3b7-b17838ecf11f a948eda8080549b45d5e929b31d85692 {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02440.WGS.T C3N-02440 CCRCC WGS tumor CPT0384430009 CPT0384430009.WholeGenome.RP-2158.bam 28561772726 BAM submitted_aligned CPTAC3 3cb67dad-0f73-4413-8a6d-f08b18d80ebf e982dc536bf997a0530c50a44aec9fa8 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.WGS.T.hg38 C3N-02440 CCRCC WGS tumor CPT0384430009 433d6946-cf30-4468-9152-89da1d9c71c7_wgs_gdc_realn.bam 83207380741 BAM harmonized CPTAC3 2abf23ac-7f36-4d1e-8c3e-bf27c9c9708e 6f9ae1d22ba1e4dc9c1458abc4116a51 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.WXS.A C3N-02440 CCRCC WXS tissue_normal CPT0384450009 CPT0384450009.WholeExome.RP-1303.bam 24841902159 BAM submitted_aligned CPTAC3 24be8aea-e162-45a0-af0a-6f785b39f8df 80578278906e541195c7a6bc4289c90d {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02440.WXS.A.hg38 C3N-02440 CCRCC WXS tissue_normal CPT0384450009 b1433c80-02ab-4985-b6af-10ef92801ec4_wxs_gdc_realn.bam 34919298377 BAM harmonized CPTAC3 c19f8aaa-d7ff-4f64-a2f7-69bec780e6f5 f87d27d0552e5359fa664fc14632a71c {"aliquot_tag": "ALQ_2c4d296c", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-02440.WXS.N C3N-02440 CCRCC WXS blood_normal CPT0385420002 CPT0385420002.WholeExome.RP-1303.bam 24579115711 BAM submitted_aligned CPTAC3 66798474-bc3b-4749-a683-f1b0fa1b6614 b2457faf9dd1b44340074bf4f7f88020 {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02440.WXS.N.hg38 C3N-02440 CCRCC WXS blood_normal CPT0385420002 b3cc5d3f-c66e-48ff-9bfc-b2b4cebe13d4_wxs_gdc_realn.bam 34052337350 BAM harmonized CPTAC3 504dfd1d-366f-4ba1-84dd-cf58e4712be9 b223aa3e11ea9ff37cff2eae52b5846d {"aliquot_tag": "ALQ_afc82740", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-02440.WXS.T C3N-02440 CCRCC WXS tumor CPT0384430009 CPT0384430009.WholeExome.RP-1303.bam 24158890976 BAM submitted_aligned CPTAC3 87a9db6a-693b-4d03-9f25-68ba5152ab4b abf5a2d5aba37734848f5fa0eb910174 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02440.WXS.T.hg38 C3N-02440 CCRCC WXS tumor CPT0384430009 433d6946-cf30-4468-9152-89da1d9c71c7_wxs_gdc_realn.bam 34504894883 BAM harmonized CPTAC3 32d766c2-c36a-4163-a83f-6617613ca1e3 e4c71ec17aa6653a8e0181ee90205ea1 {"aliquot_tag": "ALQ_a30ddccc", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-02451.MethArray.Green.A C3N-02451 LUAD Methylation_Array tissue_normal CPT0241050006 203561620159_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0a5fc8aa-fa88-4a0e-9e8e-df121c150ec0 a3c8350122fa154170b3f18ff98b7f60 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.MethArray.Green.T C3N-02451 LUAD Methylation_Array tumor CPT0241040006 203561450006_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 2fdf47e7-30bf-4951-b00b-bb53e0c402b2 de48e168ee9467becb586f4db04b7edb {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.MethArray.Red.A C3N-02451 LUAD Methylation_Array tissue_normal CPT0241050006 203561620159_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 7fb8eb52-43c4-4671-91ab-839afa8db0cc f4e6a12914c0490d38aa83ae1ee25a63 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.MethArray.Red.T C3N-02451 LUAD Methylation_Array tumor CPT0241040006 203561450006_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 2bee8bf1-2f13-46ae-a538-bbfd5af156c9 29ebc1cd1823d0c6001654ca5c2a6f17 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.miRNA-Seq.A.hg38 C3N-02451 LUAD miRNA-Seq tissue_normal CPT0241050009 ba633d92-25e7-40bb-8558-6f94d2d7e979_mirnaseq_gdc_realn.bam 212929593 BAM harmonized CPTAC3 dd1c528e-4ca3-4806-b73f-945ad43270bc 0e0817e7cf0689384c9a749591f629da {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.miRNA-Seq.S40_L004_R1.T C3N-02451 LUAD miRNA-Seq tumor CPT0241040009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGGCA_S40_L004_R1_001.unaln.bam 279215550 BAM S40_L004_R1 submitted_unaligned CPTAC3 c71b9bc3-cfea-41b9-8c08-d29a6e46ceb0 04622d02eb182bb6295b019d05b1ad09 {"aliquot_tag": "ALQ_98506c61", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.miRNA-Seq.S45_L007_R1.A C3N-02451 LUAD miRNA-Seq tissue_normal CPT0241050009 190712_UNC32-K00270_0192_BH7HL3BBXY_CGTACG_S45_L007_R1_001.unaln.bam 186258501 BAM S45_L007_R1 submitted_unaligned CPTAC3 48b93e93-9506-446d-9167-53cfd4ffc5d8 e9484352f720f7ea233aa447a3f26b07 {"aliquot_tag": "ALQ_a53045d1", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.miRNA-Seq.T.hg38 C3N-02451 LUAD miRNA-Seq tumor CPT0241040009 1d7422fb-654c-4d2c-80e6-0dbb0347175e_mirnaseq_gdc_realn.bam 305344203 BAM harmonized CPTAC3 f3bb8051-c365-4568-9f8d-6405ee12bbda 42f141feab5f8b64976cfb5828a645b7 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.RNA-Seq.chimeric.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.chimeric.gdc_realn.bam 83507774 BAM chimeric harmonized CPTAC3 7fd70443-d2ee-46ef-beaa-7a23c1156436 4244fe42ef08822cde12cea8416292ab {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.RNA-Seq.chimeric.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.chimeric.gdc_realn.bam 24317778 BAM chimeric harmonized CPTAC3 17410d7d-a705-4ba2-8af1-da0bad507e1c 16617cc9fb4b092457f14099dcb8b8e0 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.RNA-Seq.genomic.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.genomic.gdc_realn.bam 6848585463 BAM genomic harmonized CPTAC3 6c08c64b-056f-48c2-82d2-542b91b0c95e a2b0f3a2d97a7173c24813750a844e33 {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.RNA-Seq.genomic.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.genomic.gdc_realn.bam 9634489533 BAM genomic harmonized CPTAC3 65bf549c-c811-4e12-9f49-c7685a76bc56 440ef6e5a360971f3fc70af83a236651 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.RNA-Seq.S15_L004_R1.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R1_001.fastq.gz 3239708041 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 178e0d8c-862a-4248-a57c-da48fbcb46c4 6ba626ba5d6409395d3435a5a10a56ff {"aliquot_tag": "ALQ_a53045d1", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.RNA-Seq.S15_L004_R2.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R2_001.fastq.gz 3354683837 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 487f8e80-d4fe-4b41-b2f8-0a090c0a9fe2 4822dfeba9332c518aca9ad2c6f91b6c {"aliquot_tag": "ALQ_a53045d1", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.RNA-Seq.S30_L008_R1.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R1_001.fastq.gz 3423060283 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 3db15939-ea0a-4c22-88ad-c01dabe9cecb 2e4eb6d4e495337d5993e50162c124d4 {"aliquot_tag": "ALQ_98506c61", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.RNA-Seq.S30_L008_R2.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R2_001.fastq.gz 3908469233 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 6a993f42-db9c-436d-9053-c3ff66120ce1 d850ba1f83eda825ac495a8a51aa53fd {"aliquot_tag": "ALQ_98506c61", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.RNA-Seq.transcriptome.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.transcriptome.gdc_realn.bam 7087197314 BAM transcriptome harmonized CPTAC3 7eddfec1-40ee-45fa-a7fe-8ef35de97b6f ee0d6bf55d20e77f2ad59a1929e647af {"aliquot_tag": "ALQ_a53045d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.RNA-Seq.transcriptome.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.transcriptome.gdc_realn.bam 7575433567 BAM transcriptome harmonized CPTAC3 f2054ef9-5add-48c7-bfcd-43aae30ad1a3 51c92f389a3fb74b164fd6dab0348873 {"aliquot_tag": "ALQ_98506c61", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.WGS.N C3N-02451 LUAD WGS blood_normal CPT0241800002 CPT0241800002.WholeGenome.RP-1303.bam 55742329145 BAM submitted_aligned CPTAC3 5a5d2802-ff22-4e73-9a24-8cba3d487430 5a9d9ec405e5b3de9686b350dbaea2d8 {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02451.WGS.N.hg38 C3N-02451 LUAD WGS blood_normal CPT0241800002 63ece0bb-876d-4c0f-9251-1a39216e701e_wgs_gdc_realn.bam 82066438981 BAM harmonized CPTAC3 6c6ba47f-e277-43f5-bb03-4f963e20d946 d0216d22d3524cf27142c841ee8f870f {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02451.WGS.T C3N-02451 LUAD WGS tumor CPT0241040006 CPT0241040006.WholeGenome.RP-1303.bam 56489622276 BAM submitted_aligned CPTAC3 c2d0eb4d-a94e-4c3c-bbaf-3ae9b0cc90aa 224f03b8a7b1a1ec75ed18f99774467f {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.WGS.T.hg38 C3N-02451 LUAD WGS tumor CPT0241040006 2d3be50b-acef-4dbb-9f81-09afd71a6d01_wgs_gdc_realn.bam 83928856852 BAM harmonized CPTAC3 67b5c21d-eda4-4686-b2d1-b47116a7b626 9d4e27f44987d13170f81a22245ee2c4 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.WXS.A C3N-02451 LUAD WXS tissue_normal CPT0241050006 CPT0241050006.WholeExome.RP-1303.bam 26084978926 BAM submitted_aligned CPTAC3 357f596a-62ae-4a86-b73d-e5b3c4985585 2ea2de11878064e898b1176bedc02076 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.WXS.A.hg38 C3N-02451 LUAD WXS tissue_normal CPT0241050006 51427fc3-1771-4411-ba8d-9d9a8aacab8e_wxs_gdc_realn.bam 36258085459 BAM harmonized CPTAC3 c58ae13a-83d5-42e4-a35e-9f4727354f7b 6affee7520b2432df7c1ee9a19aedfa5 {"aliquot_tag": "ALQ_358f5840", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02451.WXS.N C3N-02451 LUAD WXS blood_normal CPT0241800002 CPT0241800002.WholeExome.RP-1303.bam 23650085620 BAM submitted_aligned CPTAC3 06ea488c-0269-4a66-88f5-d275e34a5fa0 95ee500a5e8eb5b5d1f8117ceee5f9c3 {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02451.WXS.N.hg38 C3N-02451 LUAD WXS blood_normal CPT0241800002 63ece0bb-876d-4c0f-9251-1a39216e701e_wxs_gdc_realn.bam 32187977799 BAM harmonized CPTAC3 a8da60ec-83c4-4608-b4eb-bbc7882ebf29 9ec4f9f233a990d6dc4f910a5a996205 {"aliquot_tag": "ALQ_16519144", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02451.WXS.T C3N-02451 LUAD WXS tumor CPT0241040006 CPT0241040006.WholeExome.RP-1303.bam 20767548832 BAM submitted_aligned CPTAC3 3d4e393f-4343-4091-803a-cabaef8f97db e6de97112a8248aef9f6f0b994ad4298 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02451.WXS.T.hg38 C3N-02451 LUAD WXS tumor CPT0241040006 2d3be50b-acef-4dbb-9f81-09afd71a6d01_wxs_gdc_realn.bam 28994478490 BAM harmonized CPTAC3 e120e2c6-e093-460b-9b95-910150a410d4 821621e6fd78612ea13d583df1ba09c7 {"aliquot_tag": "ALQ_8ef71f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.MethArray.Green.A C3N-02494 LSCC Methylation_Array tissue_normal CPT0234820009 203219670141_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1cb9595a-a029-4be1-a015-5d1fe6eae366 6871dc30aaa300b147e46f09402a8abb {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.MethArray.Green.T C3N-02494 LSCC Methylation_Array tumor CPT0234790006 203219760074_R08C01_Grn.idat 13676224 IDAT Green NA CPTAC3 f0f08a1f-49df-49af-badc-df05c628075c fde6decacd200d6ff5751f62a8bb7183 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.MethArray.Red.A C3N-02494 LSCC Methylation_Array tissue_normal CPT0234820009 203219670141_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 c7d2aeb2-6f2c-41dd-b508-935414695332 865106ee31393d91b5d28f48b611f2cc {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.MethArray.Red.T C3N-02494 LSCC Methylation_Array tumor CPT0234790006 203219760074_R08C01_Red.idat 13676224 IDAT Red NA CPTAC3 3b6b6de9-cc7f-413a-bec1-9b2120dc452d 7a2304c40fa1465bfeaa74b094c7cf0c {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.miRNA-Seq.A.hg38 C3N-02494 LSCC miRNA-Seq tissue_normal CPT0234820006 7b581342-9828-4e36-b9f2-c4645d392744_mirnaseq_gdc_realn.bam 222978334 BAM harmonized CPTAC3 6fc83936-c81d-4e11-9782-4aaad896bf21 a198bd33c4e1ba102208a05807bd2df0 {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.miRNA-Seq.S1_L005_R1.A C3N-02494 LSCC miRNA-Seq tissue_normal CPT0234820006 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L005_R1_001.unaln.bam 200199621 BAM S1_L005_R1 submitted_unaligned CPTAC3 d0bde33f-0c4d-44c2-95db-b8385ed9bea5 7f1490d9039881b20b26ba53fa87922c {"aliquot_tag": "ALQ_33012083", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.miRNA-Seq.S33_L004_R1.T C3N-02494 LSCC miRNA-Seq tumor CPT0234790009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCGTCC_S33_L004_R1_001.unaln.bam 151840930 BAM S33_L004_R1 submitted_unaligned CPTAC3 1cedf10e-8fb9-4cc6-9350-abd4abc959a4 58c8813510b37299026fb4da46dc7e6a {"aliquot_tag": "ALQ_2538bed6", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.miRNA-Seq.T.hg38 C3N-02494 LSCC miRNA-Seq tumor CPT0234790009 9e78336a-7097-4457-b712-3041a542aad4_mirnaseq_gdc_realn.bam 167793757 BAM harmonized CPTAC3 e9da9f66-5013-48a3-8abd-1e88bc6ffcd8 dbfc505a768ad037c421573e079e975f {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.RNA-Seq.chimeric.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.chimeric.gdc_realn.bam 264402110 BAM chimeric harmonized CPTAC3 183bed3e-a046-42b7-85a4-2b6b0ccb4cdb ab9c4886f8308cedf7ca1484b1027154 {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.RNA-Seq.chimeric.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.chimeric.gdc_realn.bam 181686227 BAM chimeric harmonized CPTAC3 43cdef0f-7c93-41da-8538-e4714a66975f a745492fb41511f145ccd19d06e304db {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.RNA-Seq.genomic.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.genomic.gdc_realn.bam 9174103511 BAM genomic harmonized CPTAC3 fed4a49c-274f-49c3-b44b-5d3286760766 05bed9630dc65a6ba64c5ac6539a6bde {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.RNA-Seq.genomic.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.genomic.gdc_realn.bam 9151120983 BAM genomic harmonized CPTAC3 d989a26b-e041-4cc8-aaee-0cc28c43d8c5 d61cf347740378580f137f0e6f35923d {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.RNA-Seq.S11_L003_R1.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R1_001.fastq.gz 4007001137 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 ec07c5cb-5d8d-4382-b470-fa95175226d8 edfb0b561a21baa9797de2e677fcf20f {"aliquot_tag": "ALQ_2538bed6", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.RNA-Seq.S11_L003_R2.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R2_001.fastq.gz 4148284200 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 d20fa121-a822-4e90-a5d9-eabe70735afc b011c0f82696a827e28a6e2b4c8f340a {"aliquot_tag": "ALQ_2538bed6", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.RNA-Seq.S19_L005_R1.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R1_001.fastq.gz 4363291646 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 c5b51e85-bd31-4a9a-a486-3158e4776ea3 9173db9a05122b687a26a1c2b321fcfb {"aliquot_tag": "ALQ_33012083", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.RNA-Seq.S19_L005_R2.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R2_001.fastq.gz 4301757699 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 0f456c69-99d0-4fdb-8bf0-27b41186204a 232a74113d36aaa3ef2d824d9390fac7 {"aliquot_tag": "ALQ_33012083", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.RNA-Seq.transcriptome.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.transcriptome.gdc_realn.bam 9553506951 BAM transcriptome harmonized CPTAC3 d8e5db20-cbd4-4471-83ff-d23107c20190 13a16a24ca52fcdd02ec110aeb1bbd67 {"aliquot_tag": "ALQ_33012083", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.RNA-Seq.transcriptome.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.transcriptome.gdc_realn.bam 9581532854 BAM transcriptome harmonized CPTAC3 e4b5c49c-e0ab-438c-90c2-c2001bf74de4 e5399d1e5be3525efd609e4947a56bd6 {"aliquot_tag": "ALQ_2538bed6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.WGS.N C3N-02494 LSCC WGS blood_normal CPT0234910002 CPT0234910002.WholeGenome.RP-1303.bam 128130341366 BAM submitted_aligned CPTAC3 c89c8bc1-2bb3-4e82-8df0-23688854dd5e 1e52a49ee1bcaf195cdd51e0480d6046 {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02494.WGS.N.hg38 C3N-02494 LSCC WGS blood_normal CPT0234910002 826b8522-ba14-49a4-9de2-476a38a1f58b_wgs_gdc_realn.bam 184833543871 BAM harmonized CPTAC3 1a090903-7d30-4882-9dd3-96994dc4ee8a de513ac85e76ea0186255998ac1dc34b {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02494.WGS.T C3N-02494 LSCC WGS tumor CPT0234790006 CPT0234790006.WholeGenome.RP-1303.bam 117293241481 BAM submitted_aligned CPTAC3 84ba0d9c-536a-4597-b5e1-724a9e5ffcb6 66148df4cea9656da19de76964eb3d3d {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.WGS.T.hg38 C3N-02494 LSCC WGS tumor CPT0234790006 2683741f-4fc1-413d-89e4-8b0e31b781a4_wgs_gdc_realn.bam 169361724640 BAM harmonized CPTAC3 2e3ebcb1-084c-460a-b185-eeff03a0198e c862e2908bc737635a2fcf4468d40440 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.WXS.A C3N-02494 LSCC WXS tissue_normal CPT0234820009 CPT0234820009.WholeExome.RP-1303.bam 16810725755 BAM submitted_aligned CPTAC3 17cb0049-202e-4175-97c6-fdb470504980 3a1f704669e4eefb1040360e694245b5 {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.WXS.A.hg38 C3N-02494 LSCC WXS tissue_normal CPT0234820009 937f5fa0-cd40-4406-8a58-46e092c097ba_wxs_gdc_realn.bam 23901856703 BAM harmonized CPTAC3 8cb7d343-fad8-4e82-9428-38bdd5a074b2 a11e348636a4bd2070b5755616d4f21b {"aliquot_tag": "ALQ_a3be3d12", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02494.WXS.N C3N-02494 LSCC WXS blood_normal CPT0234910002 CPT0234910002.WholeExome.RP-1303.bam 26780799044 BAM submitted_aligned CPTAC3 4da8a268-49cc-48f3-9234-7fa1a47a76c3 16776f304b9e2f3ac2cad8aa263a4f31 {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02494.WXS.N.hg38 C3N-02494 LSCC WXS blood_normal CPT0234910002 826b8522-ba14-49a4-9de2-476a38a1f58b_wxs_gdc_realn.bam 37573028390 BAM harmonized CPTAC3 88f0822d-0b68-4b77-95b0-f912e0b85cbd 5fb952da1dcbdeeaa905c0552046e45d {"aliquot_tag": "ALQ_b8904def", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02494.WXS.T C3N-02494 LSCC WXS tumor CPT0234790006 CPT0234790006.WholeExome.RP-1303.bam 21801153704 BAM submitted_aligned CPTAC3 2d886372-24a0-4c81-8cdf-5838d4d76474 f4da279d9d3dce49e5b2bf3b496449f1 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02494.WXS.T.hg38 C3N-02494 LSCC WXS tumor CPT0234790006 2683741f-4fc1-413d-89e4-8b0e31b781a4_wxs_gdc_realn.bam 30211694514 BAM harmonized CPTAC3 81e52b68-d374-46d2-8530-b0c1c2877da7 61a46b1b7d1cb0dca99eb6b15038cb19 {"aliquot_tag": "ALQ_b587a347", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.MethArray.Green.A C3N-02523 LSCC Methylation_Array tissue_normal CPT0234950010 203220070151_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b1fa8a36-3768-427b-9185-aece10ad435d f52dbf94899c167f77d61a6179152797 {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.MethArray.Green.T C3N-02523 LSCC Methylation_Array tumor CPT0234930007 203219670141_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3dfb7e2c-fc76-42da-aabe-fb3066c8b05f ba9c0a12669763f6bdcd4204933405a6 {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.MethArray.Red.A C3N-02523 LSCC Methylation_Array tissue_normal CPT0234950010 203220070151_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 7d6cb38b-4b6f-4400-a41e-77de9a2adc92 6a6b130c8d6d72722134530c29248ff7 {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.MethArray.Red.T C3N-02523 LSCC Methylation_Array tumor CPT0234930007 203219670141_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 41f22c4c-b0a2-4141-9fa7-09da6a0f7e58 2c450093da4833c3ccb2f94acd57d936 {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.miRNA-Seq.A.hg38 C3N-02523 LSCC miRNA-Seq tissue_normal CPT0234950007 703e8fb6-a3b9-46fe-ad9d-192132cdb7a1_mirnaseq_gdc_realn.bam 215458283 BAM harmonized CPTAC3 fa0a8ed7-b236-433d-8bf3-4610da579060 a512121a23e592541d443097075572c9 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.miRNA-Seq.S2_L005_R1.A C3N-02523 LSCC miRNA-Seq tissue_normal CPT0234950007 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L005_R1_001.unaln.bam 193176841 BAM S2_L005_R1 submitted_unaligned CPTAC3 247e13be-20a4-47cc-bc06-8fccf78d7f6a e406c4a3819c7fe30fb1700e0d089708 {"aliquot_tag": "ALQ_3d7a1fa0", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.miRNA-Seq.S32_L004_R1.T C3N-02523 LSCC miRNA-Seq tumor CPT0234930010 190206_UNC31-K00269_0191_AH2WY5BBXY_GTAGAG_S32_L004_R1_001.unaln.bam 178292082 BAM S32_L004_R1 submitted_unaligned CPTAC3 65228a20-683c-45ab-a4ae-89acfa544355 9b046943dff96866d7e0729552b2a04a {"aliquot_tag": "ALQ_35454ee2", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.miRNA-Seq.T.hg38 C3N-02523 LSCC miRNA-Seq tumor CPT0234930010 a2c199ad-7185-449a-b745-bbc169c1eab8_mirnaseq_gdc_realn.bam 200536674 BAM harmonized CPTAC3 cdc9b04c-fe23-49c0-b625-1a31db37921c a73212e532443eaa17e4a8f63ec3b3fd {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.RNA-Seq.chimeric.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.chimeric.gdc_realn.bam 354241711 BAM chimeric harmonized CPTAC3 4cb78810-546b-4a2c-8fd7-7d101f2ee17e 24fead17f0a258dd8e0c9e2b077557c1 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.RNA-Seq.chimeric.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.chimeric.gdc_realn.bam 169853205 BAM chimeric harmonized CPTAC3 3aca9019-a283-481d-be69-6bcbfc856057 d51fc722c48b61f138656a88d78c7473 {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.RNA-Seq.genomic.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.genomic.gdc_realn.bam 9246631727 BAM genomic harmonized CPTAC3 423ff3ef-6001-49b4-836d-a5f9d63948d3 506dc0c983edd4bcdc28a628022f80c9 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.RNA-Seq.genomic.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.genomic.gdc_realn.bam 9512638289 BAM genomic harmonized CPTAC3 2e8319ca-615e-48a5-94a1-2954213c378c f32a0d07aed30eb6c4cd8687467e91e1 {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.RNA-Seq.S18_L005_R1.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R1_001.fastq.gz 4428688721 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 eddb9e49-7438-478e-912b-aa8032c9fcb3 4e3328569bb3e234453cc2124d2aadac {"aliquot_tag": "ALQ_3d7a1fa0", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.RNA-Seq.S18_L005_R2.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R2_001.fastq.gz 4829470349 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 e6379fdb-c1fd-47fe-b7a2-c2932b349cdb ea2b59c96381ff2a547197022c7caaa4 {"aliquot_tag": "ALQ_3d7a1fa0", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.RNA-Seq.S4_L001_R1.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R1_001.fastq.gz 4473182327 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 7fcf5000-c1b8-40fb-9cad-62e04700cd75 3c2aa91ec4a5ba6c1f02fb3edc9b2074 {"aliquot_tag": "ALQ_35454ee2", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.RNA-Seq.S4_L001_R2.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R2_001.fastq.gz 5144091952 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 cb2c0f2f-c163-4515-94a8-93446e8e92d8 44227cc7bfda4e3fd88099cf77a8b937 {"aliquot_tag": "ALQ_35454ee2", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.RNA-Seq.transcriptome.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.transcriptome.gdc_realn.bam 10125113506 BAM transcriptome harmonized CPTAC3 bb3874ce-c4e8-448d-aba6-64c633c57e95 f7c68e3ebd2cd6389bfae6a7abc7fe54 {"aliquot_tag": "ALQ_3d7a1fa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.RNA-Seq.transcriptome.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.transcriptome.gdc_realn.bam 11787662070 BAM transcriptome harmonized CPTAC3 084f4ba4-548f-4808-bfdc-96af078f0933 2b854a4f2851a8a69150ea2bf8b312d5 {"aliquot_tag": "ALQ_35454ee2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.WGS.N C3N-02523 LSCC WGS blood_normal CPT0235050002 CPT0235050002.WholeGenome.RP-1303.bam 115887155848 BAM submitted_aligned CPTAC3 f460b8a7-65d8-4a6f-8522-14b306c317f1 11f7c50cb5099599e93d55aba829b625 {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02523.WGS.N.hg38 C3N-02523 LSCC WGS blood_normal CPT0235050002 d3898b9b-e275-4f84-b7ad-808669463672_wgs_gdc_realn.bam 167109332575 BAM harmonized CPTAC3 73b16f58-41fe-44ef-b653-b881d70a5894 1e37189207e9dbf3e66d0f7d2146504e {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02523.WGS.T C3N-02523 LSCC WGS tumor CPT0234930007 CPT0234930007.WholeGenome.RP-1303.bam 106991827070 BAM submitted_aligned CPTAC3 5a6605c3-ce91-4f4a-aa27-dd87aaf3ba60 db77f8a6d6ebcf3553dd514e2d57c51d {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.WGS.T.hg38 C3N-02523 LSCC WGS tumor CPT0234930007 f05424ce-b910-4564-b808-a01185fe69cf_wgs_gdc_realn.bam 154515533787 BAM harmonized CPTAC3 7fbe618d-a42a-4b83-9449-12eacb7657f7 a775a9b6140ce11d47b3a2d2fdc97b12 {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.WXS.A C3N-02523 LSCC WXS tissue_normal CPT0234950010 CPT0234950010.WholeExome.RP-1303.bam 23994624145 BAM submitted_aligned CPTAC3 eac0e3dd-dc97-4fb5-ae3e-b458f6a8cada 3f07c9d1b91aa5d538f994bbdaadfc9e {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.WXS.A.hg38 C3N-02523 LSCC WXS tissue_normal CPT0234950010 742aa38c-6552-4ede-ac43-b23b606dbc14_wxs_gdc_realn.bam 32850699327 BAM harmonized CPTAC3 2222422b-0651-42de-83e3-0f9432f909d2 1ecc08ba9ee1ea3c8d5e68e1cf2e6b5d {"aliquot_tag": "ALQ_ba05bb42", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02523.WXS.N C3N-02523 LSCC WXS blood_normal CPT0235050002 CPT0235050002.WholeExome.RP-1303.bam 27050418579 BAM submitted_aligned CPTAC3 d25c68d5-dfc5-4884-86c4-77c6653787b9 f74a0c0651cbd4c9f2a625c091234bf9 {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02523.WXS.N.hg38 C3N-02523 LSCC WXS blood_normal CPT0235050002 d3898b9b-e275-4f84-b7ad-808669463672_wxs_gdc_realn.bam 37065582918 BAM harmonized CPTAC3 2a16a8dd-0c7c-4547-b6cc-d988914d21fc fdeb986153aeae78d2cebed531632ff1 {"aliquot_tag": "ALQ_cc68b153", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02523.WXS.T C3N-02523 LSCC WXS tumor CPT0234930007 CPT0234930007.WholeExome.RP-1303.bam 24301675895 BAM submitted_aligned CPTAC3 c30a2196-242c-4fde-901c-0269183169ff ecc858099fe1cdcd730c25c10e17e55b {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02523.WXS.T.hg38 C3N-02523 LSCC WXS tumor CPT0234930007 f05424ce-b910-4564-b808-a01185fe69cf_wxs_gdc_realn.bam 33980146354 BAM harmonized CPTAC3 bfcc212e-71c1-49b1-ab06-07a05fa31676 31e21f3839c9fe7057a1ec4f04acbcee {"aliquot_tag": "ALQ_b23aea00", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.MethArray.Green.A C3N-02529 LUAD Methylation_Array tissue_normal CPT0147500009 203219670019_R03C01_Grn.idat 13676232 IDAT Green NA CPTAC3 38a9ff0d-ee51-4f09-90ac-0b2e6f2280f9 88c477832dc5884949621ef25a34f03c {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.MethArray.Green.T C3N-02529 LUAD Methylation_Array tumor CPT0147480010 203219650136_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 872372e7-110f-4a41-9052-f8621e2b153d f6e1ed86cdbbfb46cf695c175f27a94d {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.MethArray.Red.A C3N-02529 LUAD Methylation_Array tissue_normal CPT0147500009 203219670019_R03C01_Red.idat 13676232 IDAT Red NA CPTAC3 f566eb71-f9cf-4234-a4fe-c8b782399bd1 78c2ab22b23b8136563fffe174a065a2 {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.MethArray.Red.T C3N-02529 LUAD Methylation_Array tumor CPT0147480010 203219650136_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 f0dfd2b9-f90a-4a44-a47c-041b5e1734de b9e069c3ed97597841d3b373cd98e2df {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.miRNA-Seq.A.hg38 C3N-02529 LUAD miRNA-Seq tissue_normal CPT0147500006 002c41c2-6c2f-4f42-ae9c-430e23a9d5fe_mirnaseq_gdc_realn.bam 235427424 BAM harmonized CPTAC3 a1ab1a46-68d6-448d-9230-1fb5aa42b165 47302baa9dd2122e04b5c1cd9ebd3dc2 {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.miRNA-Seq.S17_L003_R1.T C3N-02529 LUAD miRNA-Seq tumor CPT0147480007 181108_UNC31-K00269_0162_AH255GBBXY_GACGAC_S17_L003_R1_001.unaln.bam 212000750 BAM S17_L003_R1 submitted_unaligned CPTAC3 349c89fe-d649-4cb9-9467-e92ab00edb19 814529855a3b3a2c0d30340163939eee {"aliquot_tag": "ALQ_7bd4e78e", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.miRNA-Seq.S8_L003_R1.A C3N-02529 LUAD miRNA-Seq tissue_normal CPT0147500006 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L003_R1_001.unaln.bam 212003475 BAM S8_L003_R1 submitted_unaligned CPTAC3 182e21ae-51f7-4ef0-9810-30aa73cfbe12 4a2a9ba2d8093b4b78d461ee94435e38 {"aliquot_tag": "ALQ_f7ff4f7c", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.miRNA-Seq.T.hg38 C3N-02529 LUAD miRNA-Seq tumor CPT0147480007 e03fb7fd-b1e2-44d6-9dee-97504204be23_mirnaseq_gdc_realn.bam 230001959 BAM harmonized CPTAC3 d9a7bba1-177c-4cc7-8eff-f4ee03ba5784 0613eba3cd332334ac9f225bc2ad5bae {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.RNA-Seq.chimeric.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.chimeric.gdc_realn.bam 79805748 BAM chimeric harmonized CPTAC3 8f0f675c-648a-4cea-9ba9-101c7a35b2f3 1b48e16af85646119d1c24da2bbc63f1 {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.RNA-Seq.chimeric.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.chimeric.gdc_realn.bam 50359661 BAM chimeric harmonized CPTAC3 8874cd60-73ec-4891-ab6d-cd7cdf4619a7 b9c94cb3f5edbc1b6a385f55119babf9 {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.RNA-Seq.genomic.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.genomic.gdc_realn.bam 9016869023 BAM genomic harmonized CPTAC3 5462693c-dd8d-47cb-9812-15b628b414a3 a72b97eb4c7f7e2a982c7a0df4e887de {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.RNA-Seq.genomic.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.genomic.gdc_realn.bam 8682101727 BAM genomic harmonized CPTAC3 a2f44320-2f78-4b91-a8b1-4d225c0aa395 6d443692e3b182a42133c7b3fafa3a8a {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.RNA-Seq.S1_L001_R1.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R1_001.fastq.gz 4082705048 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 0d16714e-8922-46ff-b066-0d0ba69a634c 558fb913912f59273e8450b9f8ab20f1 {"aliquot_tag": "ALQ_f7ff4f7c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.RNA-Seq.S1_L001_R2.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R2_001.fastq.gz 4519942921 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 654448c0-1187-46b9-88cc-ea204b93a332 1bcc55be394d4980884e05af6ffc99a2 {"aliquot_tag": "ALQ_f7ff4f7c", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.RNA-Seq.S4_L007_R1.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R1_001.fastq.gz 4003752681 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 84d3b452-6532-4edb-b8aa-9adb99a90607 1948f8f19ded82963009205720ef8a19 {"aliquot_tag": "ALQ_7bd4e78e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.RNA-Seq.S4_L007_R2.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R2_001.fastq.gz 4348550616 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 e95a3b9d-018e-4bc9-98d1-afb241b0d4ba 2a6de991c74267f956bd92faba122187 {"aliquot_tag": "ALQ_7bd4e78e", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.RNA-Seq.transcriptome.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.transcriptome.gdc_realn.bam 10598106692 BAM transcriptome harmonized CPTAC3 9847ff2b-4e4e-4b35-978a-4f0da72d34ce 046618ca221b80ad700dccf3c6ecfbb1 {"aliquot_tag": "ALQ_f7ff4f7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.RNA-Seq.transcriptome.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.transcriptome.gdc_realn.bam 10929931923 BAM transcriptome harmonized CPTAC3 bd4bc38e-8820-4326-b034-c952e8eb5e06 ab1749817ad430a3d5be1be4c3bccbc9 {"aliquot_tag": "ALQ_7bd4e78e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.WGS.A C3N-02529 LUAD WGS tissue_normal CPT0147500009 CPT0147500009.WholeGenome.RP-1303.bam 61312758740 BAM submitted_aligned CPTAC3 3ec03c26-4933-41be-b3d0-e6dc60713ab1 22c901aa2b1c9a927302e21e2817ebf8 {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.WGS.A.hg38 C3N-02529 LUAD WGS tissue_normal CPT0147500009 6b3df7a3-49c3-44c1-9496-030df7e028b9_wgs_gdc_realn.bam 90278508515 BAM harmonized CPTAC3 942a8f34-9df9-4652-b255-f798291e99e7 5508cbd7f3dd732343dc4c167513e1ca {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.WGS.N C3N-02529 LUAD WGS blood_normal CPT0147510002 CPT0147510002.WholeGenome.RP-1303.bam 59526316788 BAM submitted_aligned CPTAC3 a4755d73-7af5-4134-a634-17497c8aa819 283d91bc24f3718fb4cdc72354369e1b {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02529.WGS.N.hg38 C3N-02529 LUAD WGS blood_normal CPT0147510002 f5d583a7-082d-4092-8fe4-98747800f95d_wgs_gdc_realn.bam 87551896214 BAM harmonized CPTAC3 e52a2f34-d3d1-4a00-9669-b9f670b4ac8a b4f29e072ef6e94d625b3e686e6ceb2b {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02529.WGS.T C3N-02529 LUAD WGS tumor CPT0147480010 CPT0147480010.WholeGenome.RP-1303.bam 64957545876 BAM submitted_aligned CPTAC3 c1c4cdc4-15b2-47d5-b248-5e205eda040d c1e2278e36891d28b3e3f53d22a4cf90 {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.WGS.T.hg38 C3N-02529 LUAD WGS tumor CPT0147480010 3fa7720d-8632-4e9f-8de8-a87db733f78c_wgs_gdc_realn.bam 95339830419 BAM harmonized CPTAC3 43b89f28-f040-4a26-9e58-f3f8fc39a7a6 6ee94a295d8aff8257d85f822dd2f7bd {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.WXS.A C3N-02529 LUAD WXS tissue_normal CPT0147500009 CPT0147500009.WholeExome.RP-1303.bam 24067337547 BAM submitted_aligned CPTAC3 46200d0c-e739-4e0a-9246-3f8586d263b8 2b326fcbf4c95f3ca2299d54baade9e9 {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.WXS.A.hg38 C3N-02529 LUAD WXS tissue_normal CPT0147500009 6b3df7a3-49c3-44c1-9496-030df7e028b9_wxs_gdc_realn.bam 32128293353 BAM harmonized CPTAC3 f1ea9160-8ee0-4197-865b-3a7407c88354 dd7bd2d1bac9115c2582fe0d61de04ca {"aliquot_tag": "ALQ_674052ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02529.WXS.N C3N-02529 LUAD WXS blood_normal CPT0147510002 CPT0147510002.WholeExome.RP-1303.bam 29107147490 BAM submitted_aligned CPTAC3 f5f7caa0-6a8b-4167-b782-72550bb3869b 74abd07c4ed696aed051f490f9d733f5 {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02529.WXS.N.hg38 C3N-02529 LUAD WXS blood_normal CPT0147510002 f5d583a7-082d-4092-8fe4-98747800f95d_wxs_gdc_realn.bam 40105068850 BAM harmonized CPTAC3 786a2fc7-afa1-4450-969a-add3699c2d27 20e251289d04b8921aa84ea9ec62f778 {"aliquot_tag": "ALQ_cdf2a2d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02529.WXS.T C3N-02529 LUAD WXS tumor CPT0147480010 CPT0147480010.WholeExome.RP-1303.bam 31228828607 BAM submitted_aligned CPTAC3 5ca02229-de2d-4d95-8866-dae9c453e463 bdd50fd6d53f37da3933ac39de7640b2 {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02529.WXS.T.hg38 C3N-02529 LUAD WXS tumor CPT0147480010 3fa7720d-8632-4e9f-8de8-a87db733f78c_wxs_gdc_realn.bam 42705672042 BAM harmonized CPTAC3 3f43c4e0-6953-43ec-9a3d-0ae095105fa1 d6c4507d5390880839c7f775edd43da6 {"aliquot_tag": "ALQ_fcab436c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.MethArray.Green.A C3N-02572 LUAD Methylation_Array tissue_normal CPT0147600009 203220070100_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 78cb9f7e-0f5a-4bf7-9a27-16a759292d44 efa4f596dcfaab5c068b143fa1c98324 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.MethArray.Green.T C3N-02572 LUAD Methylation_Array tumor CPT0147580010 203027380028_R08C01_Grn.idat 13676241 IDAT Green NA CPTAC3 d629aa9c-092e-4743-a544-0bc60e0a357f f6aca92134eaec1be6dcca6568b4c0b9 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.MethArray.Red.A C3N-02572 LUAD Methylation_Array tissue_normal CPT0147600009 203220070100_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 7e59972f-8852-4064-a954-fee70d9fac20 fac79974fdfd5b65036193191859fa53 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.MethArray.Red.T C3N-02572 LUAD Methylation_Array tumor CPT0147580010 203027380028_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 2f55cf3c-d4c5-48ff-9d16-9e1bdd3b9731 6493ccd773c5a54ce38b0083e6eb9fc6 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.miRNA-Seq.A.hg38 C3N-02572 LUAD miRNA-Seq tissue_normal CPT0147600006 b5680499-1909-49e3-bb11-4a417a2b7dac_mirnaseq_gdc_realn.bam 216744242 BAM harmonized CPTAC3 ff7c1d74-7252-4c24-9dd0-c01148943009 d9d360e618d6a6bf46da1f72df8bae87 {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.miRNA-Seq.S18_L003_R1.T C3N-02572 LUAD miRNA-Seq tumor CPT0147580007 181108_UNC31-K00269_0162_AH255GBBXY_TAATCG_S18_L003_R1_001.unaln.bam 217038795 BAM S18_L003_R1 submitted_unaligned CPTAC3 0138e77f-54d2-4e03-84a8-f7da6c4806cd fc517da3df00efdb1d347450407f0f52 {"aliquot_tag": "ALQ_b088342b", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.miRNA-Seq.S9_L003_R1.A C3N-02572 LUAD miRNA-Seq tissue_normal CPT0147600006 181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L003_R1_001.unaln.bam 192236713 BAM S9_L003_R1 submitted_unaligned CPTAC3 8d07b3a0-92f2-40b9-874b-4cd077a846e0 eb6626146d5066f2be4f34d8f9c795ee {"aliquot_tag": "ALQ_716b3dd2", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.miRNA-Seq.T.hg38 C3N-02572 LUAD miRNA-Seq tumor CPT0147580007 7a43a955-f7ac-4c67-ab9c-bac03efaab13_mirnaseq_gdc_realn.bam 237877999 BAM harmonized CPTAC3 c61837c1-ce6a-49bc-abf0-c404509eb42b fb8c91a484fd9d55c8f941b690cb517f {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.RNA-Seq.chimeric.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.chimeric.gdc_realn.bam 64434030 BAM chimeric harmonized CPTAC3 bc82bba1-3029-4420-9ff3-b6faef8900bd c735b8894f2376adf4b6dd400c942d92 {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.RNA-Seq.chimeric.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.chimeric.gdc_realn.bam 42503047 BAM chimeric harmonized CPTAC3 1aed8c56-c11d-4c9f-98bb-155e9a5905d0 00d00e9d2047819f4aa8b23656980b88 {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.RNA-Seq.genomic.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.genomic.gdc_realn.bam 6485207222 BAM genomic harmonized CPTAC3 9ebf81f1-64c2-48cf-a363-05bbb0a7148c 9f8ed01aea7b0b71c00044cadd5a6f27 {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.RNA-Seq.genomic.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.genomic.gdc_realn.bam 8651981783 BAM genomic harmonized CPTAC3 2e905be0-f92a-4865-a380-47b2bd7fa45e fcf35d756f63ae10ccd2405a7293f476 {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.RNA-Seq.S23_L006_R1.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 4040981378 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 bc10b6b0-67c4-4698-8ec0-ded169a99a3d 1ed85db9dc0bf0b70355e2781177584a {"aliquot_tag": "ALQ_b088342b", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.RNA-Seq.S23_L006_R2.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 4160211180 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 5baffbc9-00eb-43de-9948-317662cc6ed6 8a065674ac25e705f4be61380eed17dc {"aliquot_tag": "ALQ_b088342b", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.RNA-Seq.S4_L001_R1.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R1_001.fastq.gz 3056501435 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 be7f9664-ce33-4b9b-aec5-03249a75ea9f 0c1f0062f4a700d95378adc5be680fa8 {"aliquot_tag": "ALQ_716b3dd2", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.RNA-Seq.S4_L001_R2.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R2_001.fastq.gz 3389884363 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 37830f1f-1ff1-41ae-af24-91010de7eb1a 975dccfa514aaff43de359542b502cd1 {"aliquot_tag": "ALQ_716b3dd2", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.RNA-Seq.transcriptome.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.transcriptome.gdc_realn.bam 7478467209 BAM transcriptome harmonized CPTAC3 da12f96e-02b5-41ee-87f8-0a49bf35bf78 3fff0b96ec3b1aa3730620e166ebc76a {"aliquot_tag": "ALQ_716b3dd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.RNA-Seq.transcriptome.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.transcriptome.gdc_realn.bam 9963082517 BAM transcriptome harmonized CPTAC3 ac10974b-8e44-4552-8fc4-b9527530f43d f52bc83083e022588ea7a49f241c7c86 {"aliquot_tag": "ALQ_b088342b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.WGS.A C3N-02572 LUAD WGS tissue_normal CPT0147600009 CPT0147600009.WholeGenome.RP-1303.bam 61272354419 BAM submitted_aligned CPTAC3 d2e68eee-60f4-42d7-901f-b7bb5a5f8e91 d91229d3e73c48e10d36624c0cd61d5d {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.WGS.A.hg38 C3N-02572 LUAD WGS tissue_normal CPT0147600009 476aee9b-cbb5-41de-b8e6-25f78d860639_wgs_gdc_realn.bam 92203457250 BAM harmonized CPTAC3 b2dea3fc-1891-404d-ba01-3c520b816357 5a2b4c6460ffc4e81ab1ae659f9fe7fd {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.WGS.N C3N-02572 LUAD WGS blood_normal CPT0147610002 CPT0147610002.WholeGenome.RP-1303.bam 56979214213 BAM submitted_aligned CPTAC3 0c3b4ced-29d4-4cca-9ef7-1213f81e35df 59a2096c1cfd59e8fa40d207699287c7 {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02572.WGS.N.hg38 C3N-02572 LUAD WGS blood_normal CPT0147610002 ad8eca4d-0dd4-4e8f-b143-2e59ec41059d_wgs_gdc_realn.bam 82634035288 BAM harmonized CPTAC3 b168ed6b-6a75-48b5-b9c9-caa8c194e3e5 8c1109aff03f3f5ef365f88df5a46e1a {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02572.WGS.T C3N-02572 LUAD WGS tumor CPT0147580010 CPT0147580010.WholeGenome.RP-1303.bam 62516152898 BAM submitted_aligned CPTAC3 ec8578cc-3892-4b1c-a40d-98c69442504b 659a3b1c330fd605d283741d8e60370d {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.WGS.T.hg38 C3N-02572 LUAD WGS tumor CPT0147580010 59f39740-a3f7-4c94-bcfa-ee614860b0bd_wgs_gdc_realn.bam 91742551628 BAM harmonized CPTAC3 9709ebc2-df28-47db-849b-1d2f6e5d6fc4 311958055c6159bcce12f5d407a6cbaf {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.WXS.A C3N-02572 LUAD WXS tissue_normal CPT0147600009 CPT0147600009.WholeExome.RP-1303.bam 25961678728 BAM submitted_aligned CPTAC3 7e9e75d7-7eb5-41e0-ac9c-8c293ddd136a 29bbf6f3a108d333681fc7494588c772 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.WXS.A.hg38 C3N-02572 LUAD WXS tissue_normal CPT0147600009 476aee9b-cbb5-41de-b8e6-25f78d860639_wxs_gdc_realn.bam 34589845123 BAM harmonized CPTAC3 91ca5f89-aa04-4e1f-9371-236ec0dd35ee 843fff3e996836085d136680ffd858c0 {"aliquot_tag": "ALQ_e1d42043", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02572.WXS.N C3N-02572 LUAD WXS blood_normal CPT0147610002 CPT0147610002.WholeExome.RP-1303.bam 23671579912 BAM submitted_aligned CPTAC3 c23bca65-a070-45fa-9254-13fc661b92b1 af31ec2be7402dcfb9d6abff7535fc52 {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02572.WXS.N.hg38 C3N-02572 LUAD WXS blood_normal CPT0147610002 ad8eca4d-0dd4-4e8f-b143-2e59ec41059d_wxs_gdc_realn.bam 31362321035 BAM harmonized CPTAC3 2ad0e396-dc6e-40ad-8709-097976ab1ccc b0c0701a1d37a8dc5d8f6f7b9307599d {"aliquot_tag": "ALQ_4b66d07b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02572.WXS.T C3N-02572 LUAD WXS tumor CPT0147580010 CPT0147580010.WholeExome.RP-1303.bam 23685713350 BAM submitted_aligned CPTAC3 7bac7219-d6ef-4daf-9e75-b86ea8bad4a6 8872182c6e37bc4f73ef4328e1fd1107 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02572.WXS.T.hg38 C3N-02572 LUAD WXS tumor CPT0147580010 59f39740-a3f7-4c94-bcfa-ee614860b0bd_wxs_gdc_realn.bam 32179096356 BAM harmonized CPTAC3 a03ec155-35f2-4a47-be49-8f5537271a7f 86d2046890ebe931c4505193752d7a17 {"aliquot_tag": "ALQ_37f790c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.MethArray.Green.T C3N-02573 PDA Methylation_Array tumor CPT0183450008 203561450025_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 dd0303ba-48fd-4a59-873d-4b1080802b3f d1d9c75395694e718c60bfb22f896281 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.MethArray.Red.T C3N-02573 PDA Methylation_Array tumor CPT0183450008 203561450025_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 ede867f5-207c-4cca-83a2-f4c4abc2e5b3 bcfcb6e7260f649c31c88bdb2bc700e1 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.miRNA-Seq.S18_L006_R1.T C3N-02573 PDA miRNA-Seq tumor CPT0183450011 190712_UNC32-K00270_0192_BH7HL3BBXY_TAATCG_S18_L006_R1_001.unaln.bam 204662076 BAM S18_L006_R1 submitted_unaligned CPTAC3 449b1224-de4e-4dd0-920d-2b041b7f8826 4dfd5f8f32e164accdcf668ea6a6ab91 {"aliquot_tag": "ALQ_d0dc8617", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.miRNA-Seq.T.hg38 C3N-02573 PDA miRNA-Seq tumor CPT0183450011 fc47ff09-3067-4751-925a-c6436aac7dab_mirnaseq_gdc_realn.bam 232658937 BAM harmonized CPTAC3 41668b57-5a93-4573-b30b-8b40777594ad b3827e86645e647efce84a6019a4bef0 {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.RNA-Seq.chimeric.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.chimeric.gdc_realn.bam 49773356 BAM chimeric harmonized CPTAC3 06e4f396-21ab-4cf9-a716-cc94606eb3d0 441079725dd93ee9f127e84dff6a4548 {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.RNA-Seq.genomic.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.genomic.gdc_realn.bam 9746990781 BAM genomic harmonized CPTAC3 f07eb643-9b55-4571-84be-e6c1203fa475 39b1d3f943f64677aad8911d31869e6d {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.RNA-Seq.S10_L003_R1.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3999602643 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 55c288e5-b38d-459b-bfef-da66a25b59ec c0227be34c258d1476714bb325afd68f {"aliquot_tag": "ALQ_d0dc8617", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.RNA-Seq.S10_L003_R2.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4446247729 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 51cd1a61-40ad-4a11-8a9f-59674a76b4ca 58172d00a3167e17630071a6ac237985 {"aliquot_tag": "ALQ_d0dc8617", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.RNA-Seq.transcriptome.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.transcriptome.gdc_realn.bam 10159279857 BAM transcriptome harmonized CPTAC3 a31a1c91-ea22-439a-80e2-0f3ee9ba34dc 08ba2ad0f8b05d5c9d5ac293b344993a {"aliquot_tag": "ALQ_d0dc8617", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.WGS.N C3N-02573 PDA WGS blood_normal CPT0183510002 CPT0183510002.WholeGenome.RP-1303.bam 86506713400 BAM submitted_aligned CPTAC3 1b57de94-25ec-4dfa-81b8-fd019c919578 f3f929da3e54371a88c6124fcbdfd4e6 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02573.WGS.N.hg38 C3N-02573 PDA WGS blood_normal CPT0183510002 935b0c08-6d0d-427b-8161-738fda126ac0_wgs_gdc_realn.bam 125831158753 BAM harmonized CPTAC3 773bac6f-f93d-4725-a0f9-4ea36c8a6f95 f9e20711b91de6964847f5a67f3db782 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02573.WGS.T C3N-02573 PDA WGS tumor CPT0183450008 CPT0183450008.WholeGenome.RP-1303.bam 146522874019 BAM submitted_aligned CPTAC3 26320d19-1e99-47fa-8b72-c30da58a8430 4ca9b1f9076fc203c023dc5a5d5d079d {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.WGS.T.hg38 C3N-02573 PDA WGS tumor CPT0183450008 09bdd740-6032-4adf-b829-b3e04b05bf3c_wgs_gdc_realn.bam 216847327716 BAM harmonized CPTAC3 f27fef19-dcf8-4de0-a185-abe201f7ba1b e051b6d65e4158551c6a84ce39694509 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.WXS.N C3N-02573 PDA WXS blood_normal CPT0183510002 CPT0183510002.WholeExome.RP-1303.bam 28186735130 BAM submitted_aligned CPTAC3 bd2224fb-95f2-4e9f-9047-34eb792c3e43 0e3c260622e4ec64d6b6dcb14fb66764 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02573.WXS.N.hg38 C3N-02573 PDA WXS blood_normal CPT0183510002 935b0c08-6d0d-427b-8161-738fda126ac0_wxs_gdc_realn.bam 38462419760 BAM harmonized CPTAC3 60dd2c65-b051-4d0f-afd1-ecc59eef3b51 e6815765c76c826ce8d32007820a9362 {"aliquot_tag": "ALQ_6e129389", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02573.WXS.T C3N-02573 PDA WXS tumor CPT0183450008 CPT0183450008.WholeExome.RP-1303.bam 45701850754 BAM submitted_aligned CPTAC3 d3c16247-53bb-45ab-8f84-8e8762dee030 bff85f3eed80070bc22a612ba1e191cd {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02573.WXS.T.hg38 C3N-02573 PDA WXS tumor CPT0183450008 09bdd740-6032-4adf-b829-b3e04b05bf3c_wxs_gdc_realn.bam 63394719927 BAM harmonized CPTAC3 55d6e56f-521b-4467-bb59-655b458c74ae 22af737db88f2a5676bd4b5581380326 {"aliquot_tag": "ALQ_b01b0ff2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.MethArray.Green.A C3N-02575 LSCC Methylation_Array tissue_normal CPT0147700006 203219640133_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1934db23-7fb9-40c8-8f4a-96979cb391ee e48dd2844e8426f38e783c2b8c0add1e {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.MethArray.Green.T C3N-02575 LSCC Methylation_Array tumor CPT0147680010 203219640157_R01C01_Grn.idat 13676228 IDAT Green NA CPTAC3 e8baedda-d9da-4613-960e-524fdc349143 be8c9f6f8bd8b35176bd287cb5e016e1 {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.MethArray.Red.A C3N-02575 LSCC Methylation_Array tissue_normal CPT0147700006 203219640133_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 a5aefdfb-3f32-47d0-a78d-5f6662a59139 c6c089141d464044308bd15cab059678 {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.MethArray.Red.T C3N-02575 LSCC Methylation_Array tumor CPT0147680010 203219640157_R01C01_Red.idat 13676228 IDAT Red NA CPTAC3 c3614361-5e3f-4b0d-a914-c667aa182ec8 28cc703f77cc62b5d2c5a3e519f4fbbf {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.miRNA-Seq.A.hg38 C3N-02575 LSCC miRNA-Seq tissue_normal CPT0147700009 893e211d-de9c-4734-a9c1-470f69e1b876_mirnaseq_gdc_realn.bam 230996275 BAM harmonized CPTAC3 361c57bc-c528-42b8-9719-eb6cc09c5d84 51eb493bb8e151d7d37572f99123bc1d {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.miRNA-Seq.S39_L002_R1.A C3N-02575 LSCC miRNA-Seq tissue_normal CPT0147700009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTCAGA_S39_L002_R1_001.unaln.bam 207464988 BAM S39_L002_R1 submitted_unaligned CPTAC3 31973d81-7249-47ec-8792-df62abe0535c 7febdc6334cbcea0aa19039dbc9e5091 {"aliquot_tag": "ALQ_2a88f3e6", "sample": "S39", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.RNA-Seq.chimeric.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.chimeric.gdc_realn.bam 28571309 BAM chimeric harmonized CPTAC3 37def7a5-fae0-4938-83c5-cea7d48c6239 b14216735e8906d6d90b103fca65c10c {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.RNA-Seq.chimeric.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.chimeric.gdc_realn.bam 22555736 BAM chimeric harmonized CPTAC3 2703efa8-b625-42e7-b3e1-3a851c5e0c8c 5c77fb8a57591ad74f22c7abf4b5382b {"aliquot_tag": "ALQ_361c4685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.RNA-Seq.genomic.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.genomic.gdc_realn.bam 8212406155 BAM genomic harmonized CPTAC3 7e3077c3-fcdc-4248-91d3-13dcdc6cd2e3 381e11ba34f54c50315ea00cd6aa868f {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.RNA-Seq.genomic.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.genomic.gdc_realn.bam 6689313713 BAM genomic harmonized CPTAC3 e80000ea-665d-43b5-9cf6-880ee2d8fe28 9e3664ce3c92a5cdbf6601245a65946f {"aliquot_tag": "ALQ_361c4685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.RNA-Seq.S24_L006_R1.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R1_001.fastq.gz 3833000070 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 ab65576a-9a88-4d65-9e89-261656233b75 055f3afbdce443913978436b8413b4d6 {"aliquot_tag": "ALQ_2a88f3e6", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.RNA-Seq.S24_L006_R2.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4008984424 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 dc38be81-3952-41c5-afd9-031991bf1733 7981223c2fc95a6b06976d64d24894d4 {"aliquot_tag": "ALQ_2a88f3e6", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.RNA-Seq.S6_L002_R1.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3050745078 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 4cad37ba-3071-4267-935a-153757a0e8f1 97c09c298363c72d90a4044a445d041a {"aliquot_tag": "ALQ_361c4685", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.RNA-Seq.S6_L002_R2.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 3198833205 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 c247ec6d-6d79-41a6-a973-cd44eb7c4457 009f6e9a4434c67de8c691dccd54cde3 {"aliquot_tag": "ALQ_361c4685", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.RNA-Seq.transcriptome.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.transcriptome.gdc_realn.bam 10186113264 BAM transcriptome harmonized CPTAC3 503d875a-c4f2-4b84-bb29-16dccf4a81b3 c93b8caae93900737e51a0c4daaacb55 {"aliquot_tag": "ALQ_2a88f3e6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.RNA-Seq.transcriptome.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.transcriptome.gdc_realn.bam 9307043446 BAM transcriptome harmonized CPTAC3 dc0290a5-fc91-4d0c-bd16-60401079271b cb8af499c6029c078080718cbb3fcd79 {"aliquot_tag": "ALQ_361c4685", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.WGS.A C3N-02575 LSCC WGS tissue_normal CPT0147700006 CPT0147700006.WholeGenome.RP-1303.bam 52409448964 BAM submitted_aligned CPTAC3 a206d830-86e3-4129-82e5-a29d64450e45 af855aa9642b5951e84b1898c998401c {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.WGS.A.hg38 C3N-02575 LSCC WGS tissue_normal CPT0147700006 9aa1d7b9-93fc-4f46-9124-e19c58382eed_wgs_gdc_realn.bam 76037232326 BAM harmonized CPTAC3 3a4d18e5-9d19-4494-81e4-e3a2a59b7e87 ede79785309e1e185cf1538e57c47d73 {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.WGS.N C3N-02575 LSCC WGS blood_normal CPT0147710002 CPT0147710002.WholeGenome.RP-1303.bam 61175564354 BAM submitted_aligned CPTAC3 8c9151b9-287f-41f6-95de-4770e3967fed 87415e99eb0e5bb048de7427661bf3c1 {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02575.WGS.N.hg38 C3N-02575 LSCC WGS blood_normal CPT0147710002 0d386142-f9ba-4144-b249-cc863cd80733_wgs_gdc_realn.bam 87571271106 BAM harmonized CPTAC3 087ff243-04f7-469f-8fa6-1eaae55e2e51 45222525f6655eb4a74ce17eaede1679 {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02575.WGS.T C3N-02575 LSCC WGS tumor CPT0147680010 CPT0147680010.WholeGenome.RP-1303.bam 60060264742 BAM submitted_aligned CPTAC3 0d336ab2-af20-4d5c-b9c0-7f065fc3dec0 85d5de267933525167f4a7c9c510750b {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.WGS.T.hg38 C3N-02575 LSCC WGS tumor CPT0147680010 c13bec2b-8009-4020-831a-4b6f51dfc6c4_wgs_gdc_realn.bam 86747873140 BAM harmonized CPTAC3 3c6274ad-fe2b-4c08-8b48-a4e48e82c3a0 531d99603929fef1485be8fc045a601b {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.WXS.A C3N-02575 LSCC WXS tissue_normal CPT0147700006 CPT0147700006.WholeExome.RP-1303.bam 23342945944 BAM submitted_aligned CPTAC3 c8e2f581-1193-4ea1-af8d-65676989293a 3c1f70841a0d8f5f51c050c2ecc9a37a {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.WXS.A.hg38 C3N-02575 LSCC WXS tissue_normal CPT0147700006 9aa1d7b9-93fc-4f46-9124-e19c58382eed_wxs_gdc_realn.bam 32094424280 BAM harmonized CPTAC3 5385328c-2012-4f3b-94c0-0787597dfa44 ccf71fb966c58e84cb7dcbd3dc075093 {"aliquot_tag": "ALQ_ba37ee77", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02575.WXS.N C3N-02575 LSCC WXS blood_normal CPT0147710002 CPT0147710002.WholeExome.RP-1303.bam 24543190299 BAM submitted_aligned CPTAC3 b4f0394b-89bf-4de3-bf1d-4cfce0f196d3 a7bf7a7db0346a59b540d3f3b91c7d98 {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02575.WXS.N.hg38 C3N-02575 LSCC WXS blood_normal CPT0147710002 0d386142-f9ba-4144-b249-cc863cd80733_wxs_gdc_realn.bam 33869950798 BAM harmonized CPTAC3 56807924-45f6-4cfb-9d3c-0852490bf541 73bbdc02ef5690422b38818c8f35e4dc {"aliquot_tag": "ALQ_803a03de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02575.WXS.T C3N-02575 LSCC WXS tumor CPT0147680010 CPT0147680010.WholeExome.RP-1303.bam 38401750183 BAM submitted_aligned CPTAC3 664699dd-f5d8-410a-89eb-042824dd6f94 9202cc4539e2abeed9ea05122841a269 {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02575.WXS.T.hg38 C3N-02575 LSCC WXS tumor CPT0147680010 c13bec2b-8009-4020-831a-4b6f51dfc6c4_wxs_gdc_realn.bam 53457541421 BAM harmonized CPTAC3 59261408-9819-4d53-9558-24492ab78705 80cdda6cceb5e7c51f9e51256759bb85 {"aliquot_tag": "ALQ_b163e267", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.MethArray.Green.A C3N-02577 CCRCC Methylation_Array tissue_normal CPT0183570006 204930640065_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e9efc4fd-f8ed-434d-8a7c-bc59a1b7e3e2 f0edbb610325dc8ab7dcfba691360f45 {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.MethArray.Green.T C3N-02577 CCRCC Methylation_Array tumor CPT0183550007 203219650006_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 25fb2a16-3bee-4b74-871b-d660b6a47868 3a3aafda7ea1cc1c29cf734e5965f0f7 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.MethArray.Red.A C3N-02577 CCRCC Methylation_Array tissue_normal CPT0183570006 204930640065_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e852135e-eb85-4651-9286-0d6c874dc9dc 2579041d860abcbcd8965bd70a1ae26c {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.MethArray.Red.T C3N-02577 CCRCC Methylation_Array tumor CPT0183550007 203219650006_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 820d1eb7-769c-4991-bb16-5f0f8fc67361 89ba28b8a7a80027827d14d304f1fc5e {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.miRNA-Seq.A.hg38 C3N-02577 CCRCC miRNA-Seq tissue_normal CPT0183570009 462a4054-514c-489e-9a80-70a7b072e6fc_mirnaseq_gdc_realn.bam 230982850 BAM harmonized CPTAC3 427d96a3-b120-4ca3-974e-57da845e9930 e99abb913a4dca4783e55ad93c8cc4d5 {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.miRNA-Seq.S3_L006_R1.A C3N-02577 CCRCC miRNA-Seq tissue_normal CPT0183570009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L006_R1_001.unaln.bam 212933486 BAM S3_L006_R1 submitted_unaligned CPTAC3 f92e159c-13cb-4f7d-97d6-ebf1da360a7e db0106771e1a4c786a8117eb451e27be {"aliquot_tag": "ALQ_7680bfa1", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.miRNA-Seq.S40_L005_R1.T C3N-02577 CCRCC miRNA-Seq tumor CPT0183550010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L005_R1_001.unaln.bam 246691034 BAM S40_L005_R1 submitted_unaligned CPTAC3 bad88f81-11c4-4993-9b5b-de7c441bf408 d0b4830a578a6ebb3a8c16fd50221d3f {"aliquot_tag": "ALQ_6c876524", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.miRNA-Seq.T.hg38 C3N-02577 CCRCC miRNA-Seq tumor CPT0183550010 12327dca-0601-4e0b-83c6-810e0be22fd4_mirnaseq_gdc_realn.bam 277185419 BAM harmonized CPTAC3 fabc66fd-8aa1-45f0-8e12-317618127593 0f193c2c97e36c95db13488f8906c2b6 {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.RNA-Seq.chimeric.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.chimeric.gdc_realn.bam 72926643 BAM chimeric harmonized CPTAC3 043ba897-26ec-4535-9ce4-64c7988a2ff4 07f9cf2ea4b89729991a821eb0542039 {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.RNA-Seq.chimeric.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.chimeric.gdc_realn.bam 31607604 BAM chimeric harmonized CPTAC3 b3ecbe02-70aa-47d1-814c-8b6fa806d351 78692c1f05f1fc1d32dc061642dd7e00 {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.RNA-Seq.genomic.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.genomic.gdc_realn.bam 11886817077 BAM genomic harmonized CPTAC3 68ea9622-a6ed-4ebe-befa-bb9c83fa46d1 d62d194f7260a3894426265ec8bad97d {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.RNA-Seq.genomic.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.genomic.gdc_realn.bam 7116172794 BAM genomic harmonized CPTAC3 cb76ffa7-434b-479d-a33c-df77a207741a c7f070d8838c4fcff6032feb56dfa29f {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.RNA-Seq.S7_L008_R1.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R1_001.fastq.gz 3394962825 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 985fe40f-089d-45d8-a08f-2010ef64767d 826a2ca7942a66d06b94499fcc7137da {"aliquot_tag": "ALQ_6c876524", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.RNA-Seq.S7_L008_R2.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R2_001.fastq.gz 3432400019 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 60f7a910-a583-4531-9211-1fc3ee5b0509 9536ace9da86108e926b136ad7cb4e3e {"aliquot_tag": "ALQ_6c876524", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.RNA-Seq.S8_L002_R1.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R1_001.fastq.gz 5208304399 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 469c3d80-5e8e-45b4-94f6-82310ac0be92 d9c24484c09386460fde6538953d204b {"aliquot_tag": "ALQ_7680bfa1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.RNA-Seq.S8_L002_R2.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R2_001.fastq.gz 5696280574 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 9b52a605-7ff2-43f7-92a0-b4bd49e01385 e4f3effae5eb690b7f9e751fb34e0284 {"aliquot_tag": "ALQ_7680bfa1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.RNA-Seq.transcriptome.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.transcriptome.gdc_realn.bam 13517842281 BAM transcriptome harmonized CPTAC3 18b1a425-6da9-423a-8318-8511c1cc2bd6 76ccf3f6d8342db674803b4050da2593 {"aliquot_tag": "ALQ_7680bfa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.RNA-Seq.transcriptome.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.transcriptome.gdc_realn.bam 8846593670 BAM transcriptome harmonized CPTAC3 2894a9e5-9277-4685-8674-daa54a6acad1 03c85d7cab347a63e044ed73934aaedf {"aliquot_tag": "ALQ_6c876524", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.WGS.N C3N-02577 CCRCC WGS blood_normal CPT0183610002 CPT0183610002.WholeGenome.RP-1303.bam 136340418473 BAM submitted_aligned CPTAC3 b2b4a119-01ad-4e94-b82f-f5270f286611 84b6e50fbbc9b4eb6dbdcc527dab2bf6 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02577.WGS.N.hg38 C3N-02577 CCRCC WGS blood_normal CPT0183610002 bd2b4798-27a5-41ef-9acb-4dea43900385_wgs_gdc_realn.bam 196737925175 BAM harmonized CPTAC3 1b04ece1-4e1c-4959-abc7-06efb5d6e218 715f7bb244ea3da58fbc738e436810b0 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02577.WGS.T C3N-02577 CCRCC WGS tumor CPT0183550007 CPT0183550007.WholeGenome.RP-1303.bam 116295753995 BAM submitted_aligned CPTAC3 3490e0dd-bffb-4f37-879d-9277af0db3e5 edbd49223f5f34ee2f6b472475ed0f67 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.WGS.T.hg38 C3N-02577 CCRCC WGS tumor CPT0183550007 144b7fc3-4170-499b-9fc0-4fa930de9fcf_wgs_gdc_realn.bam 169957395212 BAM harmonized CPTAC3 67e8d9a9-63c8-4f7a-ade5-f836f1603b07 2707ebc33b0b485373ad1886002bf0e3 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.WXS.A C3N-02577 CCRCC WXS tissue_normal CPT0183570006 CPT0183570006.WholeExome.RP-1303.bam 20954884385 BAM submitted_aligned CPTAC3 c0a4cd74-1d11-449a-aa64-2f21fa02d877 4b0dbbe9e9baf34a8b844a5746991a54 {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.WXS.A.hg38 C3N-02577 CCRCC WXS tissue_normal CPT0183570006 7218ed28-7ce6-4e76-b950-0b0263a8dc9d_wxs_gdc_realn.bam 29144093631 BAM harmonized CPTAC3 cdf7e14c-5885-44a1-a893-764600f4df3d 0799b2d06d432a76f04d028994a0b71c {"aliquot_tag": "ALQ_e63fa230", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02577.WXS.N C3N-02577 CCRCC WXS blood_normal CPT0183610002 CPT0183610002.WholeExome.RP-1303.bam 34730330802 BAM submitted_aligned CPTAC3 43a4c0cc-5fbd-46a3-a674-04e6b8d5e871 2045d1d991afdaf9b94f0a36bb86c759 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02577.WXS.N.hg38 C3N-02577 CCRCC WXS blood_normal CPT0183610002 bd2b4798-27a5-41ef-9acb-4dea43900385_wxs_gdc_realn.bam 47529560889 BAM harmonized CPTAC3 d8c891d9-72cc-457f-bfa0-42c91543e268 5fc8deadadea41561228968f811d8f74 {"aliquot_tag": "ALQ_e886e127", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02577.WXS.T C3N-02577 CCRCC WXS tumor CPT0183550007 CPT0183550007.WholeExome.RP-1303.bam 29439242224 BAM submitted_aligned CPTAC3 c295b50e-2b2b-48d6-8619-73cfe1a83771 467ece57f6c61ed428e8874487ffccd8 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02577.WXS.T.hg38 C3N-02577 CCRCC WXS tumor CPT0183550007 144b7fc3-4170-499b-9fc0-4fa930de9fcf_wxs_gdc_realn.bam 40588972675 BAM harmonized CPTAC3 d7cc076a-05e2-415d-be2b-4741e3d56fb8 fd7caa53a37c54a5aaf43c6d6e25fa13 {"aliquot_tag": "ALQ_ebf8c1c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.MethArray.Green.T C3N-02579 PDA Methylation_Array tumor CPT0207780010 203561450030_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 962f96f5-6518-4cf5-9be0-c9f6522c68e4 6a49b05d9a4bed4996d25b7a2d984881 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.MethArray.Red.T C3N-02579 PDA Methylation_Array tumor CPT0207780010 203561450030_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 9ad24678-13dc-4881-bbb5-bcf48d20ab98 b15c2240f826c311aae38f83c7c02507 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.miRNA-Seq.S5_L004_R1.T C3N-02579 PDA miRNA-Seq tumor CPT0207780007 190712_UNC32-K00270_0192_BH7HL3BBXY_CAACTA_S5_L004_R1_001.unaln.bam 232196825 BAM S5_L004_R1 submitted_unaligned CPTAC3 27c10aae-3492-414c-8950-4d47d0bd06ae 829529402204f6af78583c468b96e3d9 {"aliquot_tag": "ALQ_4087a71f", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.miRNA-Seq.T.hg38 C3N-02579 PDA miRNA-Seq tumor CPT0207780007 9473b7ab-a305-427e-a3eb-f2b0c420a94e_mirnaseq_gdc_realn.bam 262155140 BAM harmonized CPTAC3 d7fbe228-f9f7-4d4e-aecf-ad2eac91c0ed 2e23245a6f89a290656208d61633f879 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.RNA-Seq.chimeric.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.chimeric.gdc_realn.bam 42931647 BAM chimeric harmonized CPTAC3 9c9132fb-12b4-4abc-9446-99aecae628e2 c3d36ad7b43073fe5967612fc6137b76 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.RNA-Seq.genomic.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.genomic.gdc_realn.bam 11341588191 BAM genomic harmonized CPTAC3 6e767c9f-ed50-46cc-b8ab-8d3536218dc1 87f22f4049eb2c6730d6db85567db247 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.RNA-Seq.S6_L002_R1.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R1_001.fastq.gz 5587915144 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 3d8af186-ccb3-433d-ad9f-ef605c2874e7 2ab99859e391c1850bbfe47022586d42 {"aliquot_tag": "ALQ_4087a71f", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.RNA-Seq.S6_L002_R2.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R2_001.fastq.gz 6122364074 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 f4f1a9fc-0ab4-4cde-b748-4ec572df878f 92ed95a228218edf6e7b2523fbbbd171 {"aliquot_tag": "ALQ_4087a71f", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.RNA-Seq.transcriptome.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.transcriptome.gdc_realn.bam 17374155168 BAM transcriptome harmonized CPTAC3 fb35d596-ae31-4ce3-a850-b166887a03be 5da3cc38557ce874d62cabd30927dab0 {"aliquot_tag": "ALQ_4087a71f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.WGS.N C3N-02579 PDA WGS blood_normal CPT0207830002 CPT0207830002.WholeGenome.RP-1303.bam 67247549025 BAM submitted_aligned CPTAC3 9ec064ef-83ba-4131-a3c3-c3b1d0710dd4 de72c606c1e330728cd09aa270225958 {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02579.WGS.N.hg38 C3N-02579 PDA WGS blood_normal CPT0207830002 c133d775-d52b-4007-966a-36dc5d716e60_wgs_gdc_realn.bam 97820884023 BAM harmonized CPTAC3 62451390-1083-4e93-a89f-1068fb1c7a98 f26c7d7054762d84bbf492e19a1ab734 {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02579.WGS.T C3N-02579 PDA WGS tumor CPT0207780010 CPT0207780010.WholeGenome.RP-1303.bam 117965823444 BAM submitted_aligned CPTAC3 32407ab8-620c-4581-b456-43ac9e6c80ac 01745da8b41ce7a900bc7291dfafc17b {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.WGS.T.hg38 C3N-02579 PDA WGS tumor CPT0207780010 1f95b327-af03-4af5-9888-ac6c688fd49f_wgs_gdc_realn.bam 174224108177 BAM harmonized CPTAC3 bed0b828-6710-476d-951d-7ef8749d00c4 3adaa63d763f567e9f5c528d423a7a37 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.WXS.N C3N-02579 PDA WXS blood_normal CPT0207830002 CPT0207830002.WholeExome.RP-1303.bam 24389775099 BAM submitted_aligned CPTAC3 9126d857-05ed-4dce-872a-4b468a757101 a7ee3b3107f7192feedaf2b629acdd83 {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02579.WXS.N.hg38 C3N-02579 PDA WXS blood_normal CPT0207830002 c133d775-d52b-4007-966a-36dc5d716e60_wxs_gdc_realn.bam 33441247639 BAM harmonized CPTAC3 bce24c2d-7b0f-4c3c-881c-c90f482baabb dbee29b159e9b0164f4a5204e492eb2e {"aliquot_tag": "ALQ_b66bd054", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02579.WXS.T C3N-02579 PDA WXS tumor CPT0207780010 CPT0207780010.WholeExome.RP-1303.bam 43244383853 BAM submitted_aligned CPTAC3 765869fe-2015-4ef0-85c7-dc94545ab951 ab46f451220cfc02ada9c2f382b274ea {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02579.WXS.T.hg38 C3N-02579 PDA WXS tumor CPT0207780010 1f95b327-af03-4af5-9888-ac6c688fd49f_wxs_gdc_realn.bam 60950680073 BAM harmonized CPTAC3 4cf4ba48-7e6a-4c4d-9c7f-4881b9f1e0db b89173f77ecada351711fbcc93951c76 {"aliquot_tag": "ALQ_c7f803fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.MethArray.Green.A C3N-02582 LUAD Methylation_Array tissue_normal CPT0147900009 203219650217_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e66223b9-5ebe-4bf7-9b58-5b38089ce840 05b20e0a81f26904e80639d05deaf362 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.MethArray.Green.T C3N-02582 LUAD Methylation_Array tumor CPT0147880010 203219650042_R01C01_Grn.idat 13676229 IDAT Green NA CPTAC3 ea7cd40b-1926-42d3-a161-4696a25454da 939d0cdcba36ae4bec0baf11dbc41c81 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.MethArray.Red.A C3N-02582 LUAD Methylation_Array tissue_normal CPT0147900009 203219650217_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1367a200-2b5b-4762-9083-5e4991f4d326 55196c5c4298c19ac5cda2dc3df87cff {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.MethArray.Red.T C3N-02582 LUAD Methylation_Array tumor CPT0147880010 203219650042_R01C01_Red.idat 13676229 IDAT Red NA CPTAC3 49d1a170-4678-4f25-910a-35ce11822127 848cbbf4b6cfc4e4f6ed8b4bfbe42dd7 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.miRNA-Seq.A.hg38 C3N-02582 LUAD miRNA-Seq tissue_normal CPT0147900006 714516e2-df96-4723-9d67-266d87af44eb_mirnaseq_gdc_realn.bam 271892406 BAM harmonized CPTAC3 ad7aa70d-c0f5-48e5-84ef-3ab299b8d5db c3902d39a4e9b9d8995bdd06992121a6 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.miRNA-Seq.S19_L003_R1.T C3N-02582 LUAD miRNA-Seq tumor CPT0147880007 181108_UNC31-K00269_0162_AH255GBBXY_TACAGC_S19_L003_R1_001.unaln.bam 217819232 BAM S19_L003_R1 submitted_unaligned CPTAC3 1a058486-26fa-4b1e-b8e5-4d07d17a0719 b7be6bb1e34bb69ffdb37cf358961841 {"aliquot_tag": "ALQ_c1627f5", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.miRNA-Seq.S2_L003_R1.A C3N-02582 LUAD miRNA-Seq tissue_normal CPT0147900006 181108_UNC31-K00269_0162_AH255GBBXY_ATGAGC_S2_L003_R1_001.unaln.bam 244752112 BAM S2_L003_R1 submitted_unaligned CPTAC3 461f9088-1c72-4ebe-ad94-b1e862233232 7321519c11e0bbb8a6adab9806b54f45 {"aliquot_tag": "ALQ_803d8f07", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.miRNA-Seq.T.hg38 C3N-02582 LUAD miRNA-Seq tumor CPT0147880007 f3cad331-0314-47f8-8b12-efd6ff1bf038_mirnaseq_gdc_realn.bam 236027438 BAM harmonized CPTAC3 a83d5769-4948-465a-9632-d4a49fd48cf3 70fd4819ffbaad86f10d625105f65517 {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.RNA-Seq.chimeric.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.chimeric.gdc_realn.bam 130329099 BAM chimeric harmonized CPTAC3 81b7f0bb-9748-4f5a-8382-bd3d4b9b13c3 8fbfea9dc785fe446c6cb09c8c2bd7c7 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.RNA-Seq.chimeric.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.chimeric.gdc_realn.bam 42638454 BAM chimeric harmonized CPTAC3 55c129cf-a71d-4e7a-9d7e-96ab8ae1fb94 1b6d060f7239508579f149c6456bb08f {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.RNA-Seq.genomic.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.genomic.gdc_realn.bam 8311114015 BAM genomic harmonized CPTAC3 b1a29ca4-cf76-4953-9ef1-aba109175aab 80f9109d83cf96931ba7a4752987b7a3 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.RNA-Seq.genomic.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.genomic.gdc_realn.bam 8595966239 BAM genomic harmonized CPTAC3 a7e9447c-e821-42e1-8e0a-e207a7fb3718 b52303e62655df747a0319b4e82c09d3 {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.RNA-Seq.S19_L005_R1.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 4034976977 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 0cfc01dc-f4ef-4d6d-ae11-648bebc65525 558438408de3c51b678140207312619c {"aliquot_tag": "ALQ_c1627f5", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.RNA-Seq.S19_L005_R2.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 4311719705 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 dac94c84-2d46-49ac-897e-9b77e6f83c33 6c3937e173d77a2a559e465c1226e6d1 {"aliquot_tag": "ALQ_c1627f5", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.RNA-Seq.S6_L002_R1.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R1_001.fastq.gz 3859968597 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 542479cd-7439-4759-a586-3e0b172f5dbe 361592809227c93f2a17608e951326fb {"aliquot_tag": "ALQ_803d8f07", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.RNA-Seq.S6_L002_R2.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4208064449 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 397192ae-3fb6-42b9-bcd3-f9c7d7296392 ae23c76504fcf432c996c4cce08f038a {"aliquot_tag": "ALQ_803d8f07", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.RNA-Seq.transcriptome.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.transcriptome.gdc_realn.bam 9235235325 BAM transcriptome harmonized CPTAC3 459d1fbc-14f4-4a53-ab11-30fc7efbec0c 02bd99a13239751bd85bb0fd61cb58f7 {"aliquot_tag": "ALQ_803d8f07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.RNA-Seq.transcriptome.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.transcriptome.gdc_realn.bam 10627630385 BAM transcriptome harmonized CPTAC3 64902423-48a7-4c8a-bdcb-56323abd2b6d fd9ace38369497db8b7c12ad9b3fe0f9 {"aliquot_tag": "ALQ_c1627f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.WGS.A C3N-02582 LUAD WGS tissue_normal CPT0147900009 CPT0147900009.WholeGenome.RP-1303.bam 63262648540 BAM submitted_aligned CPTAC3 2f5d1181-9c3d-4502-ad3d-fc22aacabbe8 2386c73944ddbed54dd73de3b8c8a098 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.WGS.A.hg38 C3N-02582 LUAD WGS tissue_normal CPT0147900009 cf4fb393-83a1-4b9b-9099-4eae34b29129_wgs_gdc_realn.bam 92795314503 BAM harmonized CPTAC3 d88dc5e4-538f-4a49-ab3f-feb47151e14c 1e5e9c107445def4d180344c017cc614 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.WGS.N C3N-02582 LUAD WGS blood_normal CPT0147910002 CPT0147910002.WholeGenome.RP-1303.bam 55117655205 BAM submitted_aligned CPTAC3 9d2009af-daf7-4996-b1b9-d95042a49ad3 ee9b7fe3b5fa1f3f500b42b6725d9a5a {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02582.WGS.N.hg38 C3N-02582 LUAD WGS blood_normal CPT0147910002 f2ace677-28ab-4e3b-a334-6eea54e87495_wgs_gdc_realn.bam 80421167018 BAM harmonized CPTAC3 d09b9ffc-f873-402a-aeea-4775dd37e88b 29b7ef8c9c656dd5b4d802540245b0d3 {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02582.WGS.T C3N-02582 LUAD WGS tumor CPT0147880010 CPT0147880010.WholeGenome.RP-1303.bam 57150872108 BAM submitted_aligned CPTAC3 94062bc3-64cc-483c-80a4-e03d9775b2d5 b44ae5f4cd864b7927528c5ec0584bce {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.WGS.T.hg38 C3N-02582 LUAD WGS tumor CPT0147880010 5c8086ed-b146-44ad-9c30-0efc4c54d072_wgs_gdc_realn.bam 83505374642 BAM harmonized CPTAC3 cea8abc5-6e7d-4095-bd01-33d0f19cbe7e b3da9336ad1b441ed2cd987cdd683ddf {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.WXS.A C3N-02582 LUAD WXS tissue_normal CPT0147900009 CPT0147900009.WholeExome.RP-1303.bam 33083084458 BAM submitted_aligned CPTAC3 d088a230-dc11-4477-9b2e-93ef084aaae5 bebec412f99e22998e1e446e677006f6 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.WXS.A.hg38 C3N-02582 LUAD WXS tissue_normal CPT0147900009 cf4fb393-83a1-4b9b-9099-4eae34b29129_wxs_gdc_realn.bam 44188493237 BAM harmonized CPTAC3 f545a554-cbe9-4b50-86eb-7722feff2f00 bce57db36ff6abfa4f6180d437350818 {"aliquot_tag": "ALQ_10829296", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02582.WXS.N C3N-02582 LUAD WXS blood_normal CPT0147910002 CPT0147910002.WholeExome.RP-1303.bam 35209169022 BAM submitted_aligned CPTAC3 2de69632-3179-43a3-89ef-bfc17b6bc5a0 821a6f04f2eb67f1e71a848ade686a92 {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02582.WXS.N.hg38 C3N-02582 LUAD WXS blood_normal CPT0147910002 f2ace677-28ab-4e3b-a334-6eea54e87495_wxs_gdc_realn.bam 47159565884 BAM harmonized CPTAC3 f0493524-34fb-42de-812b-5ac5f2ae6434 6f706e313f4bf6a84587f1d9fc673de7 {"aliquot_tag": "ALQ_ba3062ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02582.WXS.T C3N-02582 LUAD WXS tumor CPT0147880010 CPT0147880010.WholeExome.RP-1303.bam 21927222732 BAM submitted_aligned CPTAC3 eb774fd8-e7ba-47d3-b8a5-b6962e4d1703 89d85f4e0e4f6e7c50a8d91fa3d94a30 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02582.WXS.T.hg38 C3N-02582 LUAD WXS tumor CPT0147880010 5c8086ed-b146-44ad-9c30-0efc4c54d072_wxs_gdc_realn.bam 29689423570 BAM harmonized CPTAC3 2261293a-0b88-4a0d-bf24-2cf01a99bec1 0a40a00d4ec18f9ee70c141b303b6939 {"aliquot_tag": "ALQ_8b698317", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.MethArray.Green.A C3N-02585 PDA Methylation_Array tissue_normal CPT0183770007 203561450068_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 dabcea82-6670-48ba-bdb3-dacfddd7e86a cb6bfd4c1bd777fab8abdc6067b94a9b {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02585.MethArray.Green.T C3N-02585 PDA Methylation_Array tumor CPT0183750008 203561620052_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 54417b42-79da-44d5-b67a-f50cbf53d474 18e040273fd3e4134397f5fa72b550a9 {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.MethArray.Red.A C3N-02585 PDA Methylation_Array tissue_normal CPT0183770007 203561450068_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 99881f46-bcd9-4acb-aeff-36c1f70c88ce c0a7c759098d13e3c666cc105823a979 {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02585.MethArray.Red.T C3N-02585 PDA Methylation_Array tumor CPT0183750008 203561620052_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 631bd16f-d235-4fb9-b013-4b9b3e6e507a de1c49e34f82996fd218afa100fb219d {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.miRNA-Seq.S19_L006_R1.T C3N-02585 PDA miRNA-Seq tumor CPT0183750011 190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L006_R1_001.unaln.bam 229896015 BAM S19_L006_R1 submitted_unaligned CPTAC3 26cea4a4-0920-426c-a199-88970ad1f60b 071b185dc6d70a82edf4aefcff6312f9 {"aliquot_tag": "ALQ_5648f4b9", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.miRNA-Seq.T.hg38 C3N-02585 PDA miRNA-Seq tumor CPT0183750011 29419d59-fd49-4dd7-b953-1f8880cae940_mirnaseq_gdc_realn.bam 260606156 BAM harmonized CPTAC3 5e829303-fb20-4579-84f5-c653fba64a6d acd40dd6379a0d481f808112fb29679a {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.RNA-Seq.chimeric.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.chimeric.gdc_realn.bam 42132253 BAM chimeric harmonized CPTAC3 775d6dc2-4258-45b2-92de-afd1206ddb90 f769e78b8df8b8e7c75b71e3b5ee6bcd {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.RNA-Seq.genomic.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.genomic.gdc_realn.bam 10040837642 BAM genomic harmonized CPTAC3 47eb9368-0cba-4b15-9624-f03d957034cb cc019ea1ce17aaea3dc2ef1bfa41f99a {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.RNA-Seq.S12_L003_R1.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R1_001.fastq.gz 4088387883 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 914352fc-ea66-48e9-b538-2dab218aa1d5 fe2e0d563127b17684ef5e2b41f886fc {"aliquot_tag": "ALQ_5648f4b9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.RNA-Seq.S12_L003_R2.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R2_001.fastq.gz 4445362518 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 e048a588-9c8d-452e-9a53-5cdc3629715e b912534d99305ecbe9fb27d493ac3bed {"aliquot_tag": "ALQ_5648f4b9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.RNA-Seq.transcriptome.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.transcriptome.gdc_realn.bam 10668839475 BAM transcriptome harmonized CPTAC3 134e7865-4c79-4eb7-870d-8008b3d2e34c 8bdaf1c294300125e6d6e1d854c571cb {"aliquot_tag": "ALQ_5648f4b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.WGS.N C3N-02585 PDA WGS blood_normal CPT0183810002 CPT0183810002.WholeGenome.RP-1303.bam 77667876827 BAM submitted_aligned CPTAC3 129b49e0-afab-47d6-994c-dd74db4242a1 72da157de37adc3ede58513a85d67c24 {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02585.WGS.N.hg38 C3N-02585 PDA WGS blood_normal CPT0183810002 2d6b05e6-7e99-4cfa-925f-2b617bb26f2b_wgs_gdc_realn.bam 114473097001 BAM harmonized CPTAC3 432c4b20-e467-48f5-bbc2-352c7f2c0f37 1afb499559a3d0ce5c4eac564ada9fb2 {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02585.WGS.T C3N-02585 PDA WGS tumor CPT0183750008 CPT0183750008.WholeGenome.RP-1303.bam 143170713821 BAM submitted_aligned CPTAC3 b84ff467-42d1-4cd4-ab7e-1429c48e1668 6dbba9816f48f119c326c2d6966baead {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.WGS.T.hg38 C3N-02585 PDA WGS tumor CPT0183750008 9f82cf73-0d4d-49e2-a89a-6f482fa01773_wgs_gdc_realn.bam 206565544511 BAM harmonized CPTAC3 edbc3608-6fe4-4142-b029-8961d8df1533 19a566cd684deb7a7a6eabe5c31c80af {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.WXS.A C3N-02585 PDA WXS tissue_normal CPT0183770007 CPT0183770007.WholeExome.RP-1303.bam 25910104103 BAM submitted_aligned CPTAC3 7a17e192-0dba-4298-8177-0af192edda80 332287719f81931c3c6f88cf9fcf449b {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02585.WXS.A.hg38 C3N-02585 PDA WXS tissue_normal CPT0183770007 1413d7f0-8996-4466-adf8-2e68cfb7e864_wxs_gdc_realn.bam 35157107961 BAM harmonized CPTAC3 a074d11a-6d1f-4d72-a5ab-8969066ae136 09eaf1a93f1e0fdebc6dd6cd7e6eb68e {"aliquot_tag": "ALQ_dcf033ad", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02585.WXS.N C3N-02585 PDA WXS blood_normal CPT0183810002 CPT0183810002.WholeExome.RP-1303.bam 34878684634 BAM submitted_aligned CPTAC3 abf118d8-79fd-49db-8d28-97f1ac4c834e 3b110ab461bc4d1e6fc402bba91007d5 {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02585.WXS.N.hg38 C3N-02585 PDA WXS blood_normal CPT0183810002 2d6b05e6-7e99-4cfa-925f-2b617bb26f2b_wxs_gdc_realn.bam 47399084033 BAM harmonized CPTAC3 c15928cb-6798-40c7-8834-538d4a0bce7d cc72dbaf3971b66da9b5fd3f485f992f {"aliquot_tag": "ALQ_d28c8057", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02585.WXS.T C3N-02585 PDA WXS tumor CPT0183750008 CPT0183750008.WholeExome.RP-1303.bam 51837458008 BAM submitted_aligned CPTAC3 72d952d1-c3c4-4bd4-97a8-57f3bcb69508 fc586b787133b3c43d5fd20c693218e3 {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02585.WXS.T.hg38 C3N-02585 PDA WXS tumor CPT0183750008 9f82cf73-0d4d-49e2-a89a-6f482fa01773_wxs_gdc_realn.bam 70915107981 BAM harmonized CPTAC3 2ab76a3d-b9b9-4914-8b78-ac08af372bdb 5d2e47b4b973c4f07381ae5b6ae3dee1 {"aliquot_tag": "ALQ_368f7d5c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.MethArray.Green.A C3N-02586 LUAD Methylation_Array tissue_normal CPT0148000009 203219640095_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 656b474c-d5e5-44c4-95bc-123fc1f9c0df 71a73dc200f5ad7f70bc3da6e7f0eaa1 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.MethArray.Green.T C3N-02586 LUAD Methylation_Array tumor CPT0147980010 203028200093_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1bf5a013-2dfc-4c5a-ae02-a6d492815265 73f2d5951bb2beac1259a83f789315fa {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.MethArray.Red.A C3N-02586 LUAD Methylation_Array tissue_normal CPT0148000009 203219640095_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 de9d2e0e-b266-4c74-9ac1-0a305d9d25c0 456bb457ef407d90eb208e9be3cf813f {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.MethArray.Red.T C3N-02586 LUAD Methylation_Array tumor CPT0147980010 203028200093_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 f384b694-b43b-4f72-9fc7-7467768f8f06 9dd4200927baea0cc98dc183b81ec206 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.miRNA-Seq.A.hg38 C3N-02586 LUAD miRNA-Seq tissue_normal CPT0148000006 609c04ef-7b65-41d3-8d7e-3bda7becd458_mirnaseq_gdc_realn.bam 233271580 BAM harmonized CPTAC3 8fe1f7f0-333e-4049-828c-def2124d3580 00396ed76e521771d33bcac58339f587 {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.miRNA-Seq.S20_L003_R1.T C3N-02586 LUAD miRNA-Seq tumor CPT0147980007 181108_UNC31-K00269_0162_AH255GBBXY_TATAAT_S20_L003_R1_001.unaln.bam 247969941 BAM S20_L003_R1 submitted_unaligned CPTAC3 4e19f612-c7e8-468a-aa44-f365869ae762 0aebbf3cf53400afae62e23c7c5e1811 {"aliquot_tag": "ALQ_c74af450", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.miRNA-Seq.S3_L003_R1.A C3N-02586 LUAD miRNA-Seq tissue_normal CPT0148000006 181108_UNC31-K00269_0162_AH255GBBXY_ATTCCT_S3_L003_R1_001.unaln.bam 207542222 BAM S3_L003_R1 submitted_unaligned CPTAC3 1075e369-1235-49ab-9eb3-48ca9b4fd566 8ff1521a109c8858b3ffdd56dac7132a {"aliquot_tag": "ALQ_517aae26", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.miRNA-Seq.T.hg38 C3N-02586 LUAD miRNA-Seq tumor CPT0147980007 e0b26f28-1e3d-427c-94aa-8e63c611bea1_mirnaseq_gdc_realn.bam 269092527 BAM harmonized CPTAC3 0bcf0b4e-2980-443e-9ccf-09b319497a6a dc1308690bd3b8f5daa3c5e9b88c6c7a {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.RNA-Seq.chimeric.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.chimeric.gdc_realn.bam 176757432 BAM chimeric harmonized CPTAC3 ab2edff9-0def-48cd-8b94-196796cb8ccd 19a268360138b2aafbf0a2886841139e {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.RNA-Seq.chimeric.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.chimeric.gdc_realn.bam 35660422 BAM chimeric harmonized CPTAC3 d312252a-46cb-4e7b-a837-f61fafdaab06 dbc8fc4e9a524a8c39135742501b8540 {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.RNA-Seq.genomic.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.genomic.gdc_realn.bam 10306998518 BAM genomic harmonized CPTAC3 44c94cd3-5b17-40ba-96a2-92d966d1a321 fc1cd7ae46c989e708ac04e80f37777e {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.RNA-Seq.genomic.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.genomic.gdc_realn.bam 8787308285 BAM genomic harmonized CPTAC3 97110172-35bf-4b2b-8f64-887be3bec696 2b7bc85b054efd77aea692bfb3998be5 {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.RNA-Seq.S22_L006_R1.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R1_001.fastq.gz 3926303770 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 694ee77f-462d-4e97-8391-eedf2593791b 66fa5faad7e7795d6fe48faac0dc152b {"aliquot_tag": "ALQ_c74af450", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.RNA-Seq.S22_L006_R2.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R2_001.fastq.gz 4212407561 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 cd8b39a5-1ef2-4304-ad2a-bc398a537daf 335a40cd8c0ab8f4cbf9d2ae32900509 {"aliquot_tag": "ALQ_c74af450", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.RNA-Seq.S2_L001_R1.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3920057396 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 86c667ea-54da-4e8e-9f28-ffda103d0938 0e1a6c1000a0e97b842b82825b7aa027 {"aliquot_tag": "ALQ_517aae26", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.RNA-Seq.S2_L001_R2.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4292573803 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 d54a8a19-632b-46c6-8d98-35a1634e8c03 b7ede63715625618e6fe1997d360f559 {"aliquot_tag": "ALQ_517aae26", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.RNA-Seq.transcriptome.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.transcriptome.gdc_realn.bam 9197470229 BAM transcriptome harmonized CPTAC3 6d399c70-7985-4f4b-9f43-5751c3984cbe 93176a13abab115218827f008004db4e {"aliquot_tag": "ALQ_517aae26", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.RNA-Seq.transcriptome.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.transcriptome.gdc_realn.bam 10193310393 BAM transcriptome harmonized CPTAC3 4a407c19-a899-4d3b-9f41-f9028b3e0dde 2201da3f5ff4384da37049678ed90a8f {"aliquot_tag": "ALQ_c74af450", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.Targeted.T C3N-02586 LUAD Targeted_Sequencing tumor CPT0147980010 CPT0147980010.CustomSelection.RP-1303.PDO-18786.bam 4733831323 BAM submitted_aligned CPTAC3 b333a01f-8a99-4386-91e6-11c5d4c955ae 70df66c89d3fb1b27ba1bbd74ffa812d {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.Targeted.T.hg38 C3N-02586 LUAD Targeted_Sequencing tumor CPT0147980010 73ee6f62-37dc-43b0-8ff4-0a8c1c1a2f17_targetedsequencing_gdc_realn.bam 6627829300 BAM harmonized CPTAC3 d1be3119-3531-45b0-b914-baf7d58d9ad2 3dfac3f4d1d6812d839df5751a5015e7 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.WGS.A C3N-02586 LUAD WGS tissue_normal CPT0148000009 CPT0148000009.WholeGenome.RP-1303.bam 61824794648 BAM submitted_aligned CPTAC3 94c244c2-29ca-46b2-a783-c463118441e4 710513fc4698611553abe87ed93ac605 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.WGS.A.hg38 C3N-02586 LUAD WGS tissue_normal CPT0148000009 e7e39aef-a6af-4333-9fa1-06682a5b5bce_wgs_gdc_realn.bam 89085938465 BAM harmonized CPTAC3 ac94d3bb-d292-41c9-9eb4-025c3e81b080 e20bcee66cd821d67c553551777d61c9 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.WGS.N C3N-02586 LUAD WGS blood_normal CPT0148010002 CPT0148010002.WholeGenome.RP-1303.bam 56303575704 BAM submitted_aligned CPTAC3 176175c8-1460-42f7-9fac-5da2340d4664 ef1899cea2a7184f7a7ae311e7e6b10e {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02586.WGS.N.hg38 C3N-02586 LUAD WGS blood_normal CPT0148010002 84458a40-db8a-4990-b3c0-3a22f842e9b3_wgs_gdc_realn.bam 82744521359 BAM harmonized CPTAC3 14f36c4d-08fc-4db8-9b78-63ec2462aa60 36133813bd2fe8b6047dff7fc77b8270 {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02586.WGS.T C3N-02586 LUAD WGS tumor CPT0147980010 CPT0147980010.WholeGenome.RP-1303.bam 61945949040 BAM submitted_aligned CPTAC3 88d96c1d-27b8-4491-94c5-c956bfa14216 4bcdbad8c4d64d6dae89e372f21cdf47 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.WGS.T.hg38 C3N-02586 LUAD WGS tumor CPT0147980010 73ee6f62-37dc-43b0-8ff4-0a8c1c1a2f17_wgs_gdc_realn.bam 94410861755 BAM harmonized CPTAC3 a5b21519-8166-4726-8b51-ced6507a88cb 296857e7657e9767332295d51a0dffb0 {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.WXS.A C3N-02586 LUAD WXS tissue_normal CPT0148000009 CPT0148000009.WholeExome.RP-1303.bam 23821606843 BAM submitted_aligned CPTAC3 f1cbae06-71fb-430f-849f-bf4d59e8c3bd eff2741fcbdd88b42d1fe39d0b3d0897 {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.WXS.A.hg38 C3N-02586 LUAD WXS tissue_normal CPT0148000009 e7e39aef-a6af-4333-9fa1-06682a5b5bce_wxs_gdc_realn.bam 31667387232 BAM harmonized CPTAC3 13b3d0cc-73c3-40bc-8e06-2ef35e3965dc 5c9bb4837b7d8362e66e4a66c49b085b {"aliquot_tag": "ALQ_c1c5b3b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02586.WXS.N C3N-02586 LUAD WXS blood_normal CPT0148010002 CPT0148010002.WholeExome.RP-1303.bam 48408947801 BAM submitted_aligned CPTAC3 f21f0d46-6298-4468-9664-7ce3f5231e33 7ffac1ee0d16b6005743bd4f599021ef {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02586.WXS.N.hg38 C3N-02586 LUAD WXS blood_normal CPT0148010002 84458a40-db8a-4990-b3c0-3a22f842e9b3_wxs_gdc_realn.bam 64603223832 BAM harmonized CPTAC3 e065c736-b5ab-4af6-8e6e-15f0a2622475 81ac7a4451cf30dda89f1b9b4e647eff {"aliquot_tag": "ALQ_6b77438f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02586.WXS.T C3N-02586 LUAD WXS tumor CPT0147980010 CPT0147980010.WholeExome.RP-1303.bam 25823791478 BAM submitted_aligned CPTAC3 90a3ed72-21be-4014-b827-a674e8f16834 ddd51b1fa5112172cd316fe8958c248b {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02586.WXS.T.hg38 C3N-02586 LUAD WXS tumor CPT0147980010 73ee6f62-37dc-43b0-8ff4-0a8c1c1a2f17_wxs_gdc_realn.bam 35368510426 BAM harmonized CPTAC3 37832802-e1f4-43f7-bc46-67bcc4233f2b 51257a64d7ff9f41cc71a162e3f06f1c {"aliquot_tag": "ALQ_403550b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.MethArray.Green.A C3N-02587 LUAD Methylation_Array tissue_normal CPT0148100009 203219650164_R01C01_Grn.idat 13676235 IDAT Green NA CPTAC3 6a917187-7c30-4a5c-b90f-68fee216e71c 83465f95802505b8730ce419b29fb410 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.MethArray.Green.T C3N-02587 LUAD Methylation_Array tumor CPT0148080010 203219670117_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 356f2253-52d5-4a36-8755-7b5cc2e5eaac dd6712316545f2ce0da4199930cf0fa5 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.MethArray.Red.A C3N-02587 LUAD Methylation_Array tissue_normal CPT0148100009 203219650164_R01C01_Red.idat 13676235 IDAT Red NA CPTAC3 56709476-cd7d-4639-87b9-76245775071f 1d36b2aaeb2a9de9b0f1e28862c82729 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.MethArray.Red.T C3N-02587 LUAD Methylation_Array tumor CPT0148080010 203219670117_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 3d452683-de78-453c-b385-fc8496d640ba 2520bb6d343c3d2ec5dfdfa8d572b560 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.miRNA-Seq.A.hg38 C3N-02587 LUAD miRNA-Seq tissue_normal CPT0148100006 9c59e5a3-36f5-4931-a5fd-93b2a3788533_mirnaseq_gdc_realn.bam 273068090 BAM harmonized CPTAC3 4f01f6e4-4c5c-4fc8-8e40-9262fb2b852f ba8ed3292ae04466f875a6a1bdae77ad {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.miRNA-Seq.S21_L003_R1.T C3N-02587 LUAD miRNA-Seq tumor CPT0148080007 181108_UNC31-K00269_0162_AH255GBBXY_TCATTC_S21_L003_R1_001.unaln.bam 218233853 BAM S21_L003_R1 submitted_unaligned CPTAC3 113d7c51-2d3c-49ea-8ed5-72f0427080c6 2e86bc54ebdce42c027eb605b7b66de9 {"aliquot_tag": "ALQ_160dd571", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.miRNA-Seq.S4_L003_R1.A C3N-02587 LUAD miRNA-Seq tissue_normal CPT0148100006 181108_UNC31-K00269_0162_AH255GBBXY_CAAAAG_S4_L003_R1_001.unaln.bam 245632645 BAM S4_L003_R1 submitted_unaligned CPTAC3 ac11a7a4-a332-425f-adaa-3ef9c04a3af8 c79cef9cc6636f460404b33f39083f48 {"aliquot_tag": "ALQ_9a267d83", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.miRNA-Seq.T.hg38 C3N-02587 LUAD miRNA-Seq tumor CPT0148080007 658dcb94-e542-4ea6-bbd4-7205d980ec4b_mirnaseq_gdc_realn.bam 240605441 BAM harmonized CPTAC3 54603d13-bc13-44be-b921-92b554061215 314f9fc080eb9c32e0df65691f4c5474 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.RNA-Seq.chimeric.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.chimeric.gdc_realn.bam 107885146 BAM chimeric harmonized CPTAC3 b345786d-aea1-4bdf-a44c-b9a913962691 14f24d52874280e8bd035e1a1547dd4e {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.RNA-Seq.chimeric.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.chimeric.gdc_realn.bam 30839333 BAM chimeric harmonized CPTAC3 5c5978dd-9d69-42b6-be26-5fa00152f130 8b0f3dc824680e92b5eb4c5c0af79fd1 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.RNA-Seq.genomic.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.genomic.gdc_realn.bam 9226362658 BAM genomic harmonized CPTAC3 16801bba-dedd-4181-b71a-54f01999321b 54bb53ef92daa1f5f810b6dfb8d2480a {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.RNA-Seq.genomic.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.genomic.gdc_realn.bam 8723142673 BAM genomic harmonized CPTAC3 c2c61cd8-e2f3-489e-9971-c42a9fa59ad3 98f3c625b31b45c58102ba4712b35798 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.RNA-Seq.S21_L006_R1.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R1_001.fastq.gz 3836963306 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 97b059c7-dd4a-4115-9781-ade8fb892063 d249dd1d0e69f24144703d0d542c7efc {"aliquot_tag": "ALQ_160dd571", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.RNA-Seq.S21_L006_R2.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R2_001.fastq.gz 4148435363 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 d94ec4df-9457-4d44-a101-a66fd2ec0e24 af9b7a7448208ce86d01e1fb56aad2ef {"aliquot_tag": "ALQ_160dd571", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.RNA-Seq.S8_L002_R1.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R1_001.fastq.gz 4456773186 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 1db09be6-8c61-4200-bb2d-045c3e4ed414 e4a152dc5c3ff0ed73cb155c02b265cf {"aliquot_tag": "ALQ_9a267d83", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.RNA-Seq.S8_L002_R2.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4754113558 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 d4744049-4d5c-4345-8438-7d75f664df0e d02460e731bc09072102fc784acbb47e {"aliquot_tag": "ALQ_9a267d83", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.RNA-Seq.transcriptome.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.transcriptome.gdc_realn.bam 10615441820 BAM transcriptome harmonized CPTAC3 c335d989-b7aa-47ac-b837-11efc3072e59 9fe52c3dd9839ade97f2a34a473007b8 {"aliquot_tag": "ALQ_9a267d83", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.RNA-Seq.transcriptome.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.transcriptome.gdc_realn.bam 11665338642 BAM transcriptome harmonized CPTAC3 4d2c20c2-80d7-41dd-899e-f454093146b7 d44d1e81b175fac654d4ed72c5253e61 {"aliquot_tag": "ALQ_160dd571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.Targeted.T C3N-02587 LUAD Targeted_Sequencing tumor CPT0148080010 CPT0148080010.CustomSelection.RP-1303.PDO-18786.bam 5083127666 BAM submitted_aligned CPTAC3 e52d6091-8366-469e-9f8b-e7253b46499e dccf1ce91c96f1498a2808f47ed1308a {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.Targeted.T.hg38 C3N-02587 LUAD Targeted_Sequencing tumor CPT0148080010 d6125e9e-214c-48d0-a98d-3c10a87ff09e_targetedsequencing_gdc_realn.bam 6975193127 BAM harmonized CPTAC3 6c8b8c79-303b-406f-88a0-48c94301b953 7de5ed28b37d4dc5fe785a161dc61173 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.WGS.A C3N-02587 LUAD WGS tissue_normal CPT0148100009 CPT0148100009.WholeGenome.RP-1303.bam 58194106906 BAM submitted_aligned CPTAC3 15afa751-7833-465e-b653-f405e21b86b2 09419f2f12091211ba6b91d5891370de {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.WGS.A.hg38 C3N-02587 LUAD WGS tissue_normal CPT0148100009 b33f6da6-8365-4800-bf4e-a13314058485_wgs_gdc_realn.bam 85970313225 BAM harmonized CPTAC3 8fc3d397-7fec-4586-887b-a35f356f7e2d b6299595918d1cd03b687691d746a5f6 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.WGS.N C3N-02587 LUAD WGS blood_normal CPT0148110002 CPT0148110002.WholeGenome.RP-1303.bam 58034064880 BAM submitted_aligned CPTAC3 714d7037-b6e0-4ab2-acb5-a7aa7d43bab6 888948a220cbeed7366c465cde354b1f {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02587.WGS.N.hg38 C3N-02587 LUAD WGS blood_normal CPT0148110002 ba9013c4-8616-44e1-9ed7-7cfbc4a74e1f_wgs_gdc_realn.bam 84123488813 BAM harmonized CPTAC3 bfdfc3e7-d5d5-4c1c-b626-d5b6c9b5baa2 b822cd19da0f21f3f10c783829b7a415 {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02587.WGS.T C3N-02587 LUAD WGS tumor CPT0148080010 CPT0148080010.WholeGenome.RP-1303.bam 58042763193 BAM submitted_aligned CPTAC3 6a044f9d-24d6-49eb-bb83-f4f6e2e550c8 c6c27fb3aadda4cf361b0a120fa910ca {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.WGS.T.hg38 C3N-02587 LUAD WGS tumor CPT0148080010 d6125e9e-214c-48d0-a98d-3c10a87ff09e_wgs_gdc_realn.bam 85119273118 BAM harmonized CPTAC3 c0e3bb09-2d9f-48c0-9217-e05a91db72fd 0ac1c6252442a063bfd31b5b96d0af72 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.WXS.A C3N-02587 LUAD WXS tissue_normal CPT0148100009 CPT0148100009.WholeExome.RP-1303.bam 21209140944 BAM submitted_aligned CPTAC3 5b35cde6-d868-490e-a97e-e9691d5a0d11 691c9c5674ff2f99ac7fd3d31cf48c05 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.WXS.A.hg38 C3N-02587 LUAD WXS tissue_normal CPT0148100009 b33f6da6-8365-4800-bf4e-a13314058485_wxs_gdc_realn.bam 28667550265 BAM harmonized CPTAC3 5cbc8539-406e-4951-b913-5c6fef73d75a d9881b55dbcdc423ace20acf70dfc778 {"aliquot_tag": "ALQ_a996012", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02587.WXS.N C3N-02587 LUAD WXS blood_normal CPT0148110002 CPT0148110002.WholeExome.RP-1303.bam 46402912649 BAM submitted_aligned CPTAC3 962d6b42-0d73-4864-82a2-e66d2b2da918 643672d653c27b87633e4034b65f5575 {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02587.WXS.N.hg38 C3N-02587 LUAD WXS blood_normal CPT0148110002 ba9013c4-8616-44e1-9ed7-7cfbc4a74e1f_wxs_gdc_realn.bam 62240721774 BAM harmonized CPTAC3 6dbf4461-1e68-4b6c-8dd0-7a96da5d7214 2ea3cef9d12dc5141544c17e3c88ba52 {"aliquot_tag": "ALQ_a02b902a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02587.WXS.T C3N-02587 LUAD WXS tumor CPT0148080010 CPT0148080010.WholeExome.RP-1303.bam 29588565411 BAM submitted_aligned CPTAC3 614835d9-42d1-4f94-aea0-9e17939425e8 80efcc87681dffa2a8228e852857abb3 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02587.WXS.T.hg38 C3N-02587 LUAD WXS tumor CPT0148080010 d6125e9e-214c-48d0-a98d-3c10a87ff09e_wxs_gdc_realn.bam 39479864742 BAM harmonized CPTAC3 0e7f0ebf-378c-4dae-8e11-ed229e13dddb 49e0db74ce9e30564275e4f3b7989429 {"aliquot_tag": "ALQ_91727193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.MethArray.Green.A C3N-02588 LUAD Methylation_Array tissue_normal CPT0148200009 203219640160_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 dc16dc00-641f-4d9a-8975-cbccc087a668 214d20d8041fb6838275cf3321cc4f82 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.MethArray.Green.T C3N-02588 LUAD Methylation_Array tumor CPT0148180010 203027390049_R06C01_Grn.idat 13676229 IDAT Green NA CPTAC3 552501c7-68f2-4703-8aff-1ab174889a45 d0a868b560413de6e40ab2e545493d10 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.MethArray.Red.A C3N-02588 LUAD Methylation_Array tissue_normal CPT0148200009 203219640160_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 bcf30911-dbc3-4c80-89ff-273be6f5f111 c1431eb9dbfdd6181b5a2cc18db3d708 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.MethArray.Red.T C3N-02588 LUAD Methylation_Array tumor CPT0148180010 203027390049_R06C01_Red.idat 13676229 IDAT Red NA CPTAC3 3b02f4d4-2977-4c7e-a5f8-88d46117c9cf d2b427acbd8f4aed2932647aae7643d3 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.miRNA-Seq.A.hg38 C3N-02588 LUAD miRNA-Seq tissue_normal CPT0148200006 f70bbbd3-e229-43d0-8497-446a9a7573be_mirnaseq_gdc_realn.bam 262346339 BAM harmonized CPTAC3 eb84ee46-4fab-481d-b636-874c17b4e177 e505d8f23afd05bb4f1938263d4b89a2 {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.miRNA-Seq.S22_L003_R1.T C3N-02588 LUAD miRNA-Seq tumor CPT0148180007 181108_UNC31-K00269_0162_AH255GBBXY_TCCCGA_S22_L003_R1_001.unaln.bam 210613129 BAM S22_L003_R1 submitted_unaligned CPTAC3 531be2a5-0bbd-49c4-af4d-2aefa560d62a 24798a21d5a0981ff23b9b60d04ef0ef {"aliquot_tag": "ALQ_dd5106d4", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.miRNA-Seq.S5_L003_R1.A C3N-02588 LUAD miRNA-Seq tissue_normal CPT0148200006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L003_R1_001.unaln.bam 233772364 BAM S5_L003_R1 submitted_unaligned CPTAC3 67c0b889-ff2a-4f3d-a9b3-46ff364cab52 faad696c12b25aeaf80aa2194b1214ea {"aliquot_tag": "ALQ_1cb20f2d", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.miRNA-Seq.T.hg38 C3N-02588 LUAD miRNA-Seq tumor CPT0148180007 1024214a-4878-466a-b964-7228ab11ee77_mirnaseq_gdc_realn.bam 229859635 BAM harmonized CPTAC3 d9d2dee8-f90c-4f7a-b120-3ad2da74b1aa 06bc9650fb31ea4907f3b3550dba10c7 {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.RNA-Seq.chimeric.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.chimeric.gdc_realn.bam 163488880 BAM chimeric harmonized CPTAC3 f85d6c35-879d-4f31-8296-7c356130c993 9a49a19e7c86cea08c34c5f5d86577b7 {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.RNA-Seq.chimeric.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.chimeric.gdc_realn.bam 40883264 BAM chimeric harmonized CPTAC3 91557d4f-2dbd-482d-b7ee-326a552cd707 c33e0b15d6ea571e4c99115ca162c8a0 {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.RNA-Seq.genomic.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.genomic.gdc_realn.bam 7749368022 BAM genomic harmonized CPTAC3 9c35b891-4d83-45a8-9039-db0884a5c4eb 05ee58ed7292c354d2e21871c2f981df {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.RNA-Seq.genomic.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.genomic.gdc_realn.bam 9767832730 BAM genomic harmonized CPTAC3 65ff20f6-804d-41d2-ba39-7664feb0ba39 20ef6818ec13a0c55fca6015ad6abc79 {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.RNA-Seq.S24_L006_R1.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R1_001.fastq.gz 4528492951 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 b6b18c65-7d64-413e-8384-ab62d44284eb 4d1e1adf20ce804e1e9b1fb442da7397 {"aliquot_tag": "ALQ_dd5106d4", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.RNA-Seq.S24_L006_R2.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R2_001.fastq.gz 4794829253 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 3d3d4104-07ff-499d-b7c5-c67f354d8c3c 16d4065594a3b3d3c2784c847dc8a1ba {"aliquot_tag": "ALQ_dd5106d4", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.RNA-Seq.S7_L002_R1.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3807304647 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 5218ecfd-40b8-4a1a-b114-0e9713e3758d 66b3eb6f7bd3032de62825954abca342 {"aliquot_tag": "ALQ_1cb20f2d", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.RNA-Seq.S7_L002_R2.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4125134372 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 7647a638-17b5-4584-8f13-02dcdb31143b 03efdae0bfbe6b419de90e8cca57f42a {"aliquot_tag": "ALQ_1cb20f2d", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.RNA-Seq.transcriptome.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.transcriptome.gdc_realn.bam 8514889045 BAM transcriptome harmonized CPTAC3 3ed10dc3-f23c-475a-8f48-b4fe220a9b09 0daef698e2416d288cbef1d8a753541b {"aliquot_tag": "ALQ_1cb20f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.RNA-Seq.transcriptome.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.transcriptome.gdc_realn.bam 12440818738 BAM transcriptome harmonized CPTAC3 a2c0358c-a948-4a8c-851b-65fddedb2054 d32e7b100438e11b9eecbba2026b029e {"aliquot_tag": "ALQ_dd5106d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.Targeted.T C3N-02588 LUAD Targeted_Sequencing tumor CPT0148180010 CPT0148180010.CustomSelection.RP-1303.PDO-18786.bam 4664758335 BAM submitted_aligned CPTAC3 d7806929-4953-4442-a8c3-c5d8a4645f30 77037f439f4ea16bb636a3d1568327b6 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.Targeted.T.hg38 C3N-02588 LUAD Targeted_Sequencing tumor CPT0148180010 7c314644-9f5c-4fe4-8145-3c70a6d08133_targetedsequencing_gdc_realn.bam 6387054496 BAM harmonized CPTAC3 15a32e68-abd5-45ff-b944-ed9feefabc55 251cdee032b40db49de15acd309a2ac7 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.WGS.A C3N-02588 LUAD WGS tissue_normal CPT0148200009 CPT0148200009.WholeGenome.RP-1303.bam 63204677868 BAM submitted_aligned CPTAC3 00885bf4-951b-4601-a63d-7042dc231a6e faeaeb25c1b6f63a8185729cde43f605 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.WGS.A.hg38 C3N-02588 LUAD WGS tissue_normal CPT0148200009 fdb85fa8-e844-4264-a18d-e9ae929b7cc0_wgs_gdc_realn.bam 93103772541 BAM harmonized CPTAC3 74f578d4-3fa9-4236-96cc-4067ffabb4c6 27e72b227364b97b33e3eaa51ac509d6 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.WGS.N C3N-02588 LUAD WGS blood_normal CPT0148210002 CPT0148210002.WholeGenome.RP-1303.bam 65403865232 BAM submitted_aligned CPTAC3 639a5cab-1508-4db2-8103-c64510e6c602 83cee6d0b0ff198c23beca60d177a417 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02588.WGS.N.hg38 C3N-02588 LUAD WGS blood_normal CPT0148210002 a05ec13f-5c47-458c-8aea-1154de9ccba1_wgs_gdc_realn.bam 96160115740 BAM harmonized CPTAC3 098847a4-df2b-49e0-8511-3cb83fe7b996 8e6aebda6b1a8530f588367928a2a248 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02588.WGS.T C3N-02588 LUAD WGS tumor CPT0148180010 CPT0148180010.WholeGenome.RP-1303.bam 57038812412 BAM submitted_aligned CPTAC3 63e0a059-f278-4e3a-93c6-96cd6e9d1c62 f9efa204086e2c418dea019e5cb25333 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.WGS.T.hg38 C3N-02588 LUAD WGS tumor CPT0148180010 7c314644-9f5c-4fe4-8145-3c70a6d08133_wgs_gdc_realn.bam 83337665977 BAM harmonized CPTAC3 e2b63a92-2721-4557-b7c9-cd619e9812c8 3eb38a00ca9a48b01750342fd02984a2 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.WXS.A C3N-02588 LUAD WXS tissue_normal CPT0148200009 CPT0148200009.WholeExome.RP-1303.bam 25077455051 BAM submitted_aligned CPTAC3 f42f1e0d-acb8-438e-9d6b-479bf509943e ac7f9c10399f9b8f35f15e52505f386e {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.WXS.A.hg38 C3N-02588 LUAD WXS tissue_normal CPT0148200009 fdb85fa8-e844-4264-a18d-e9ae929b7cc0_wxs_gdc_realn.bam 33611725143 BAM harmonized CPTAC3 0286aa78-00ea-41fe-9b21-8013a64a908a e5ecf5e46ff064e92bb483c523de6496 {"aliquot_tag": "ALQ_8c0d12bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02588.WXS.N C3N-02588 LUAD WXS blood_normal CPT0148210002 CPT0148210002.WholeExome.RP-1303.bam 27096599869 BAM submitted_aligned CPTAC3 62fb8c25-b483-45d7-9e54-bd7078d5c910 527cf5bd76da7b208e751079dad47e35 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02588.WXS.N.hg38 C3N-02588 LUAD WXS blood_normal CPT0148210002 a05ec13f-5c47-458c-8aea-1154de9ccba1_wxs_gdc_realn.bam 36033314944 BAM harmonized CPTAC3 c463b66a-ba7d-479b-89d0-e48d7a801c83 fb7f613fcacac04b02540a04e5cfa5f2 {"aliquot_tag": "ALQ_26bfe284", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02588.WXS.T C3N-02588 LUAD WXS tumor CPT0148180010 CPT0148180010.WholeExome.RP-1303.bam 39151781185 BAM submitted_aligned CPTAC3 f9cc7d70-9cff-49f2-b95f-4e5c7508abe9 35e36e19defe005954107530a9f08fc6 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02588.WXS.T.hg38 C3N-02588 LUAD WXS tumor CPT0148180010 7c314644-9f5c-4fe4-8145-3c70a6d08133_wxs_gdc_realn.bam 54764778675 BAM harmonized CPTAC3 2ae183a5-d519-4133-aa51-b195ec309011 bf072a395f6b0ce16b4f7d2ddd8d31f3 {"aliquot_tag": "ALQ_5a2ea236", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.MethArray.Green.A C3N-02589 PDA Methylation_Array tissue_normal CPT0162670007 203561620012_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e4b456df-3bec-41bd-86f2-1f525318dc18 13038b726c4181352fd791010ba4b41d {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.MethArray.Green.T C3N-02589 PDA Methylation_Array tumor CPT0162660007 203561450006_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 eac6b1b5-0aa0-45aa-8ca9-c552618fea8c a369ff51a26e7ef51336a033d5f001ce {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.MethArray.Red.A C3N-02589 PDA Methylation_Array tissue_normal CPT0162670007 203561620012_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 d4585fce-bd2a-431d-af51-bffaccb8900d d02bd18b259c82d510a588f4a7bd7287 {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.MethArray.Red.T C3N-02589 PDA Methylation_Array tumor CPT0162660007 203561450006_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 2865e782-f946-44b9-aab8-c21f829567a7 91cf2d598a711a060ab7211cbf362ded {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.miRNA-Seq.A.hg38 C3N-02589 PDA miRNA-Seq tissue_normal CPT0162670010 18ba3c36-065d-489b-b67f-19bcf52da9be_mirnaseq_gdc_realn.bam 283384872 BAM harmonized CPTAC3 8c95589e-d62a-4538-8420-183c8043c966 dfbcef9a8f24f69d3ec255111f5173ed {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.miRNA-Seq.S20_L003_R1.A C3N-02589 PDA miRNA-Seq tissue_normal CPT0162670010 190813_UNC32-K00270_0196_AH5MCWBBXY_CATTTT_S20_L003_R1_001.unaln.bam 249963429 BAM S20_L003_R1 submitted_unaligned CPTAC3 b9bb3b74-2bd0-454d-9416-84c2dd222a3f 7e7974c2a24df13bcdc343a7c75a0958 {"aliquot_tag": "ALQ_232e5d6c", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.miRNA-Seq.S40_L005_R1.T C3N-02589 PDA miRNA-Seq tumor CPT0162660010 190712_UNC32-K00270_0192_BH7HL3BBXY_GTAGAG_S40_L005_R1_001.unaln.bam 214692575 BAM S40_L005_R1 submitted_unaligned CPTAC3 7392f254-dfc8-49b5-8d51-28ad22fce2dc 19d5a2eb5aed2eb94090ca2e12074c91 {"aliquot_tag": "ALQ_1e4e74dc", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.miRNA-Seq.T.hg38 C3N-02589 PDA miRNA-Seq tumor CPT0162660010 75988f97-542f-410e-89d4-df85dad63b2d_mirnaseq_gdc_realn.bam 246832781 BAM harmonized CPTAC3 f13c3a88-cc3d-4195-9971-48ce3cf10a1e 3ef01f4f2e8ec9b13586fd209e4253c4 {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.RNA-Seq.chimeric.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.chimeric.gdc_realn.bam 47193877 BAM chimeric harmonized CPTAC3 0d2a1787-37d4-4c39-92a4-030e61ee95d1 4f3177718a1485721709388f23a9a73b {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.RNA-Seq.chimeric.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.chimeric.gdc_realn.bam 37343373 BAM chimeric harmonized CPTAC3 694847b6-db72-4589-91bf-424a29607f14 7cb2499325bce53735fd233f7d521ace {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.RNA-Seq.genomic.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.genomic.gdc_realn.bam 10123471423 BAM genomic harmonized CPTAC3 8cc2dd3e-b5eb-4a81-bfa3-bf11f7437c1e f2bcec8c98eeb71a8118ede073d02a71 {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.RNA-Seq.genomic.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.genomic.gdc_realn.bam 8662347769 BAM genomic harmonized CPTAC3 26fc9d10-47aa-4675-828b-6c416039bfd7 85377c692f935c66337fe730b76a3ec2 {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.RNA-Seq.S18_L005_R1.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R1_001.fastq.gz 4244742143 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 3f1d0dc3-1de5-42d0-b534-8320064d881f 24a365d73dcf17c110fdf221eec3a54e {"aliquot_tag": "ALQ_1e4e74dc", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.RNA-Seq.S18_L005_R2.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R2_001.fastq.gz 4545951139 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 a5c04d86-8a09-471f-8956-11e6c0c3df8c 63f0a4249c1eb914df02ce0922cba14f {"aliquot_tag": "ALQ_1e4e74dc", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.RNA-Seq.S23_L006_R1.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R1_001.fastq.gz 4518545951 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 6cab4697-ccb1-4c67-8e6d-bbe7907f0ef6 9c33fd28acbd07023f59d9f4375b6438 {"aliquot_tag": "ALQ_232e5d6c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.RNA-Seq.S23_L006_R2.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R2_001.fastq.gz 5245948103 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 76024d1f-9895-461b-8c5c-5e28dd523d4d 497443fd322de1c2c5c44f8effc6b158 {"aliquot_tag": "ALQ_232e5d6c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.RNA-Seq.transcriptome.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.transcriptome.gdc_realn.bam 12618553534 BAM transcriptome harmonized CPTAC3 032bb4b5-9ff3-4d6d-999d-d44852a5c9f2 bd245a9d7a0e12b9d985f0c51515c9ef {"aliquot_tag": "ALQ_232e5d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.RNA-Seq.transcriptome.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.transcriptome.gdc_realn.bam 12033691608 BAM transcriptome harmonized CPTAC3 fa93ef83-a52a-4ed4-aba6-3105777b583c 69c3a2e00ae4e93cfbf246c024f7286a {"aliquot_tag": "ALQ_1e4e74dc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.WGS.N C3N-02589 PDA WGS blood_normal CPT0162700002 CPT0162700002.WholeGenome.RP-1303.bam 74920388053 BAM submitted_aligned CPTAC3 49e4f876-6f21-458b-b8b4-2f8f719c1377 c7b026447eb4d83661da9c72e053c3d6 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02589.WGS.N.hg38 C3N-02589 PDA WGS blood_normal CPT0162700002 66637cfa-407a-4d07-abc6-5ed16df0ddc4_wgs_gdc_realn.bam 108828000338 BAM harmonized CPTAC3 e5141fae-ff56-46d1-9593-39a000b93d8b 1ea45394f78bcfd3e02a7514f422c198 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02589.WGS.T C3N-02589 PDA WGS tumor CPT0162660007 CPT0162660007.WholeGenome.RP-1303.bam 158544822807 BAM submitted_aligned CPTAC3 2891a482-cc98-4405-93fd-9305dbb29fe2 e38a1c288f82251926c2c4ac817f27ed {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.WGS.T.hg38 C3N-02589 PDA WGS tumor CPT0162660007 caf681d2-5806-4cfe-994c-6466c2908f86_wgs_gdc_realn.bam 230751137688 BAM harmonized CPTAC3 74f9fad7-f4f7-4326-bfb0-f537e01f7f55 6e76acbfacb983cb6748b143f3cb5db2 {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.WXS.A C3N-02589 PDA WXS tissue_normal CPT0162670007 CPT0162670007.WholeExome.RP-1303.bam 22081027858 BAM submitted_aligned CPTAC3 dfb2dfb0-8eee-457f-a888-f7cb5147f0ee a5adca4b3288025fedc7623ba48dd5e6 {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.WXS.A.hg38 C3N-02589 PDA WXS tissue_normal CPT0162670007 dc6579e4-a39f-4d5b-934d-c2ae86d86794_wxs_gdc_realn.bam 30159342435 BAM harmonized CPTAC3 f24f7782-164c-47e6-b0d8-56ae6031020e 4e14ef3f5221c4f562aa92701c67829d {"aliquot_tag": "ALQ_a451f98e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02589.WXS.N C3N-02589 PDA WXS blood_normal CPT0162700002 CPT0162700002.WholeExome.RP-1303.bam 25301684258 BAM submitted_aligned CPTAC3 c355a45c-ec85-4cff-a82e-6f815f13b322 fe7a2b537ce1e6f31fdfe896bb30d1e4 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02589.WXS.N.hg38 C3N-02589 PDA WXS blood_normal CPT0162700002 66637cfa-407a-4d07-abc6-5ed16df0ddc4_wxs_gdc_realn.bam 34721742561 BAM harmonized CPTAC3 9b1b16ca-4dba-4f0f-a4b0-16588c3d3d05 c2dd5d70b2a3cddda8e7dce7d33507a6 {"aliquot_tag": "ALQ_ad4702b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02589.WXS.T C3N-02589 PDA WXS tumor CPT0162660007 CPT0162660007.WholeExome.RP-1303.bam 30236393735 BAM submitted_aligned CPTAC3 84611962-0e51-4c1e-80a5-8b089da4c70f 7d0937e238e1c37209600463c186ad6d {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02589.WXS.T.hg38 C3N-02589 PDA WXS tumor CPT0162660007 caf681d2-5806-4cfe-994c-6466c2908f86_wxs_gdc_realn.bam 41965499075 BAM harmonized CPTAC3 72f2dee6-e7fb-429b-a5b0-68230437f99b b5f88553431dc9f545b2faefad4a94f6 {"aliquot_tag": "ALQ_9931d03e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_7615fff5.MethArray.Green.T C3N-02590 PDA Methylation_Array tumor CPT0187590020 203561450054_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e88d2890-28b0-47b5-aaa0-6256ecc28953 427b6845ba56b90f8cca75c971a76c5e {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_7615fff5.MethArray.Red.T C3N-02590 PDA Methylation_Array tumor CPT0187590020 203561450054_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 4280fa37-718d-463a-a423-bf2a0a2e2052 d67c7a265bf794f1ad9e425356b2a252 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_7615fff5.WGS.T C3N-02590 PDA WGS tumor CPT0187590020 CPT0187590020.WholeGenome.RP-1303.bam 57496710292 BAM submitted_aligned CPTAC3 685b3bb8-cb6e-41ca-954f-7bdf1d5687c7 4434546841e4c9ba4bf079daaf509415 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_7615fff5.WGS.T.hg38 C3N-02590 PDA WGS tumor CPT0187590020 66cd1789-c1cf-4b80-aa3b-76081ab0ea54_wgs_gdc_realn.bam 83690866151 BAM harmonized CPTAC3 8682ed8c-0406-48a5-9ba9-30b1e0e7958b 922b6f093d76764f59555ec05e2fca57 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_7615fff5.WXS.T C3N-02590 PDA WXS tumor CPT0187590020 CPT0187590020.WholeExome.RP-1303.bam 63041283424 BAM submitted_aligned CPTAC3 08dfed58-87d9-40c9-bddb-7591263acf11 e857bddcb895a58fe8fd3555765a62ef {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_7615fff5.WXS.T.hg38 C3N-02590 PDA WXS tumor CPT0187590020 66cd1789-c1cf-4b80-aa3b-76081ab0ea54_wxs_gdc_realn.bam 86827491680 BAM harmonized CPTAC3 60d3161a-5889-4f09-8a1f-5c02d20c4b15 c42f4cd4a9a0b7dfdbc1a5f530696ea3 {"aliquot_tag": "DUP_7615fff5", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_9f765ac0.WGS.T C3N-02590 PDA WGS tumor CPT0187590026 CPT0187590026.WholeGenome.RP-1303.bam 139778751639 BAM submitted_aligned CPTAC3 02b393f0-a988-43df-97c0-4008606bf13f d5ac8920b0947e65f5f4d19f627a0bc3 {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_9f765ac0.WGS.T.hg38 C3N-02590 PDA WGS tumor CPT0187590026 aa022931-97a5-4a8f-89f0-6acbd1d6fc6c_wgs_gdc_realn.bam 203126922195 BAM harmonized CPTAC3 15cdcb37-01df-4016-810b-acf610bf26d0 247a7c5fd7a41d00f0a5f5fcf44f03b0 {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_9f765ac0.WXS.T C3N-02590 PDA WXS tumor CPT0187590026 CPT0187590026.WholeExome.RP-1303.bam 50413514189 BAM submitted_aligned CPTAC3 9d9f8dc0-4476-43eb-a68a-c56559689ec9 5b50bffef5596f44cdec4372c0a79e21 {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.DUP_9f765ac0.WXS.T.hg38 C3N-02590 PDA WXS tumor CPT0187590026 aa022931-97a5-4a8f-89f0-6acbd1d6fc6c_wxs_gdc_realn.bam 71035417727 BAM harmonized CPTAC3 28c76065-6382-4508-b859-3260f21669b5 57c9b435adbb8c81134a1774c2138cfc {"aliquot_tag": "DUP_9f765ac0", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.miRNA-Seq.S6_L002_R1.T C3N-02590 PDA miRNA-Seq tumor CPT0187590016 190108_UNC31-K00269_0176_AHYGLVBBXX_GCCAAT_S6_L002_R1_001.unaln.bam 225584374 BAM S6_L002_R1 submitted_unaligned CPTAC3 4975d966-ffab-4a24-a2ea-e7f67761bde0 1493104f346b5a308274ab660129bf3f {"aliquot_tag": "ALQ_b45b0903", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.miRNA-Seq.T.hg38 C3N-02590 PDA miRNA-Seq tumor CPT0187590016 67b9fc7b-0477-494e-a59c-e3e905bb245a_mirnaseq_gdc_realn.bam 253829316 BAM harmonized CPTAC3 e5ae3251-d1d6-4ca4-929f-f8bf263ab367 9452c50eb12c6e104ae4101963b04e2f {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.RNA-Seq.chimeric.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.chimeric.gdc_realn.bam 9483334 BAM chimeric harmonized CPTAC3 3d05644f-7bd5-4a72-b513-e4ee9dbd3617 0c7895b8da0e5712ee3a3fe6b5eb4c03 {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.RNA-Seq.genomic.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.genomic.gdc_realn.bam 12776263409 BAM genomic harmonized CPTAC3 7a8f1808-115b-4153-87ae-92ed4db140de 9cbb7a6f0c1a1ba8fa40b7dacd8c7d30 {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.RNA-Seq.S2_L001_R1.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3131688108 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 84d73b44-bbb1-4a25-99d4-b8f1b74f571c b119b1ab9d2c23b730f2c95599d9ca31 {"aliquot_tag": "ALQ_b45b0903", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.RNA-Seq.S2_L001_R2.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 3483715687 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 83fd17f6-28eb-46d2-81b0-2ef839a1a9fd b1709f9b738bdf839f7fd2a4c0b9cc4c {"aliquot_tag": "ALQ_b45b0903", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.RNA-Seq.transcriptome.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.transcriptome.gdc_realn.bam 7164521480 BAM transcriptome harmonized CPTAC3 4bdcb7da-22fe-43b3-b781-a20da5e2b8a3 d3cfe3603f28118fbafe8786d7e2023d {"aliquot_tag": "ALQ_b45b0903", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02590.WGS.N C3N-02590 PDA WGS blood_normal CPT0187630002 CPT0187630002.WholeGenome.RP-1303.bam 62669268624 BAM submitted_aligned CPTAC3 a7bdad43-f3fd-4058-a78a-34ef34bd3acd 6802686f28caa189549b0c9b8ebb0af3 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02590.WGS.N.hg38 C3N-02590 PDA WGS blood_normal CPT0187630002 ade0461b-bf5a-4f6c-8fee-09d43580e9c8_wgs_gdc_realn.bam 90540505781 BAM harmonized CPTAC3 dd10fbb1-dccd-4561-a48b-1ee485a78bef 5b04ef022e8fd357c59c9bd9b6583886 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02590.WXS.N C3N-02590 PDA WXS blood_normal CPT0187630002 CPT0187630002.WholeExome.RP-1303.bam 30121240731 BAM submitted_aligned CPTAC3 39604754-f3a4-46a6-901c-1b2d667ad74a 462a28ae64ecc7220868575add828de9 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02590.WXS.N.hg38 C3N-02590 PDA WXS blood_normal CPT0187630002 ade0461b-bf5a-4f6c-8fee-09d43580e9c8_wxs_gdc_realn.bam 41090038552 BAM harmonized CPTAC3 a0da46e0-ff1f-4434-997e-68947453421b a2fdf758635ad432f3b799382fe96992 {"aliquot_tag": "ALQ_66099654", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02590.WXS.T C3N-02590 PDA WXS tumor CPT0187590022 CPT0187590022.WholeExome.RP-1303.bam 36033454513 BAM submitted_aligned CPTAC3 7580b76c-0327-414e-99bd-e99392202b66 b3230644d8fc374cf84baad478cac8f9 {"aliquot_tag": "ALQ_981b9ed9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_42c4a098.MethArray.Green.T C3N-02591 PDA Methylation_Array tumor CPT0162710028 203561620080_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 89bbbd5e-8f2b-4a2d-99dd-4114715f6756 0c54beee98ca88d971238ec599c7a067 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_42c4a098.MethArray.Red.T C3N-02591 PDA Methylation_Array tumor CPT0162710028 203561620080_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 ce7fd8cf-705f-4a47-af11-c7cf87f6039a 2366572d0388bfe989bb0c83cb7f8009 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_42c4a098.WGS.T C3N-02591 PDA WGS tumor CPT0162710028 CPT0162710028.WholeGenome.RP-1303.bam 113490519072 BAM submitted_aligned CPTAC3 4645829a-6698-4b8d-841b-a0517e75aa9e 42b5a34e304e4ebd3e84a3dae7b2b356 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_42c4a098.WGS.T.hg38 C3N-02591 PDA WGS tumor CPT0162710028 ac04ab66-7985-49f7-b93c-15543bedc183_wgs_gdc_realn.bam 164522380568 BAM harmonized CPTAC3 1b64353e-c790-4243-8abf-8c0daa45fc52 2c2a2518395f7a585dd532d7e25cac52 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_42c4a098.WXS.T C3N-02591 PDA WXS tumor CPT0162710028 CPT0162710028.WholeExome.RP-1303.bam 54648593175 BAM submitted_aligned CPTAC3 967859b6-b9ba-4f0a-bd76-172bf914bca1 7721d00df8535dab68583a4740ba1799 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_42c4a098.WXS.T.hg38 C3N-02591 PDA WXS tumor CPT0162710028 ac04ab66-7985-49f7-b93c-15543bedc183_wxs_gdc_realn.bam 77193314643 BAM harmonized CPTAC3 43299d09-3a6a-4682-ab39-4a2396d6f71c a38eaa48bac8344a9ca7c04be4d8aba2 {"aliquot_tag": "DUP_42c4a098", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_5269ddf2.MethArray.Green.T C3N-02591 PDA Methylation_Array tumor CPT0162710034 203561450046_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 7b9ccc62-9004-4c66-ae37-6c59f001ddad d80ca16e339d9276a9743b34a47f7ade {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_5269ddf2.MethArray.Red.T C3N-02591 PDA Methylation_Array tumor CPT0162710034 203561450046_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 2ad2b5ba-1ec6-4399-ae61-5ebceca78583 0f35a41c9c73df91d9245926a6ccdd1e {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_5269ddf2.WGS.T C3N-02591 PDA WGS tumor CPT0162710034 CPT0162710034.WholeGenome.RP-1303.bam 127937314211 BAM submitted_aligned CPTAC3 545bc3ff-09be-41db-a68e-68742b7d39e5 793236f29c0dffaf757fd4a10da4b79e {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_5269ddf2.WGS.T.hg38 C3N-02591 PDA WGS tumor CPT0162710034 c62bcb6f-642a-42a2-a715-d7962bb7f8bc_wgs_gdc_realn.bam 183625036297 BAM harmonized CPTAC3 a52e3367-f8e9-465c-9912-6bcd91e2518b a7079b674de659efabc5cb1657b08798 {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_5269ddf2.WXS.T C3N-02591 PDA WXS tumor CPT0162710034 CPT0162710034.WholeExome.RP-1303.bam 48349896562 BAM submitted_aligned CPTAC3 f97ddea4-e55c-4caa-b712-1603730df0e4 5c9ae41358fd5064fccba09728570faf {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.DUP_5269ddf2.WXS.T.hg38 C3N-02591 PDA WXS tumor CPT0162710034 c62bcb6f-642a-42a2-a715-d7962bb7f8bc_wxs_gdc_realn.bam 68185993871 BAM harmonized CPTAC3 faefc7e3-98d6-4018-af5f-9674ffdf8c23 5f66cc1a899bb2316575d41d2a3421a3 {"aliquot_tag": "DUP_5269ddf2", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02591.WGS.N C3N-02591 PDA WGS blood_normal CPT0162750002 CPT0162750002.WholeGenome.RP-1303.bam 77541630186 BAM submitted_aligned CPTAC3 aaefd7be-c9cd-4dbe-8671-ed4a0951ae45 0046ad6ed1cf0338c04b248f73ae9e1a {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02591.WGS.N.hg38 C3N-02591 PDA WGS blood_normal CPT0162750002 4968424c-2b02-4d69-92ca-6216433228ac_wgs_gdc_realn.bam 112329969836 BAM harmonized CPTAC3 af83a17a-141b-4f96-98fc-2b709c558b90 d421ed2e5920acc388e67ac501e00e6e {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02591.WXS.N C3N-02591 PDA WXS blood_normal CPT0162750002 CPT0162750002.WholeExome.RP-1303.bam 25610717920 BAM submitted_aligned CPTAC3 6f0f0dc2-b00d-4440-ba17-47c28396d9eb 9fb9672db674a0ab8b8a1680c8a00859 {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02591.WXS.N.hg38 C3N-02591 PDA WXS blood_normal CPT0162750002 4968424c-2b02-4d69-92ca-6216433228ac_wxs_gdc_realn.bam 35122427782 BAM harmonized CPTAC3 2ac0e90d-c37c-4044-aa66-74caed82b248 2fd2650f90e27884e462d4d3a2c09c67 {"aliquot_tag": "ALQ_65a78dc4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02591.WXS.T C3N-02591 PDA WXS tumor CPT0162710030 CPT0162710030.WholeExome.RP-1303.bam 27939284227 BAM submitted_aligned CPTAC3 42d07bfb-e1e3-4936-95d1-aba0e3c26895 783fb6c5012a08327c7dafc6998c9184 {"aliquot_tag": "ALQ_550419eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.MethArray.Green.T C3N-02592 PDA Methylation_Array tumor CPT0162760006 203273630258_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8c2f67c5-a2ed-43c6-8617-4c42e766ad4b f728cb3269859f1357004f10acbd33b2 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.MethArray.Red.T C3N-02592 PDA Methylation_Array tumor CPT0162760006 203273630258_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 5a769678-cc53-47bc-b14c-df7eccd9d3ba 908be99562d62990611b8f61f7784786 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.miRNA-Seq.S11_L006_R1.T C3N-02592 PDA miRNA-Seq tumor CPT0162760009 190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L006_R1_001.unaln.bam 240691968 BAM S11_L006_R1 submitted_unaligned CPTAC3 030a0ace-f36d-4996-84a7-d9bd06f12293 7be2350b96ead9b8bed8b14305b45441 {"aliquot_tag": "ALQ_b5d52e9c", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.miRNA-Seq.T.hg38 C3N-02592 PDA miRNA-Seq tumor CPT0162760009 4670d6ec-b2f7-40d7-ae66-039ad794cc76_mirnaseq_gdc_realn.bam 264587731 BAM harmonized CPTAC3 32f7da4f-457f-439d-a8cf-940c96a30bb7 e5aec24ab824a2ed791d41bc0db52ead {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.RNA-Seq.chimeric.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.chimeric.gdc_realn.bam 38988076 BAM chimeric harmonized CPTAC3 07c69c7c-081f-46fa-8bb0-9691946f4a45 1e764756c57b3fa44d0e3a18b3892788 {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.RNA-Seq.genomic.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.genomic.gdc_realn.bam 10567659878 BAM genomic harmonized CPTAC3 4f67283c-e362-4bb1-b4d5-852b23a6ae6c 8fec6edb8db55c40af06c0627be6c823 {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.RNA-Seq.S20_L005_R1.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R1_001.fastq.gz 4240838662 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 ebbfc55a-b377-42df-b70d-5afd5caf59c3 f9dc67c01e0408e79c51c5da8cc80ec2 {"aliquot_tag": "ALQ_b5d52e9c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.RNA-Seq.S20_L005_R2.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R2_001.fastq.gz 4592710542 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 2ec7b054-6c3b-4ec8-b5ef-a6cb0c12db87 ecae262283c429462f614704feb38c3e {"aliquot_tag": "ALQ_b5d52e9c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.RNA-Seq.transcriptome.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.transcriptome.gdc_realn.bam 10915766366 BAM transcriptome harmonized CPTAC3 86f76124-1443-4262-8f64-a71b55b60b92 e216a81173c70ac8ba8b7e502f9cfeb6 {"aliquot_tag": "ALQ_b5d52e9c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.WGS.N C3N-02592 PDA WGS blood_normal CPT0162820002 CPT0162820002.WholeGenome.RP-1303.bam 55285214824 BAM submitted_aligned CPTAC3 b5015ca0-ccba-44c6-9e19-e89399dc8d89 7b6110b19fa22339e488a5321efacf34 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02592.WGS.N.hg38 C3N-02592 PDA WGS blood_normal CPT0162820002 e82ffcee-6ec4-4bfd-b8fd-1e92111a7ec3_wgs_gdc_realn.bam 81831792121 BAM harmonized CPTAC3 0d734c6a-2d89-483a-a2de-a647e6e3fa98 7190b17dc28d3754f617000c8df9bd96 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02592.WGS.T C3N-02592 PDA WGS tumor CPT0162760006 CPT0162760006.WholeGenome.RP-1303.bam 124697722454 BAM submitted_aligned CPTAC3 f69faf82-2ce7-4f15-9335-85c6c81fe7bf 599c01643e187aea29f82e393cb3112e {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.WGS.T.hg38 C3N-02592 PDA WGS tumor CPT0162760006 61953ee5-9be4-4e83-abae-1bc34aa7cbb0_wgs_gdc_realn.bam 184476106563 BAM harmonized CPTAC3 2321d986-be99-4b4b-bf09-222478456eaf aeb87dd9196c623f12c2f8f279782dbb {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.WXS.N C3N-02592 PDA WXS blood_normal CPT0162820002 CPT0162820002.WholeExome.RP-1303.bam 22243550826 BAM submitted_aligned CPTAC3 81841214-95c3-420a-bfb2-6eed0a9f581a 4db2c47343a3f70b61f3e2fa5509ea98 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02592.WXS.N.hg38 C3N-02592 PDA WXS blood_normal CPT0162820002 e82ffcee-6ec4-4bfd-b8fd-1e92111a7ec3_wxs_gdc_realn.bam 30449199716 BAM harmonized CPTAC3 0bf1b98c-fa49-4fb7-8b8c-edb0059aa775 38d95e27a81389217f2a9e9cf174cc04 {"aliquot_tag": "ALQ_26d1e301", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02592.WXS.T C3N-02592 PDA WXS tumor CPT0162760006 CPT0162760006.WholeExome.RP-1303.bam 50433519264 BAM submitted_aligned CPTAC3 a5724f15-059d-4dee-982f-e2425bf50421 4378ccb76ee5934ef0b2e3222ffa7733 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02592.WXS.T.hg38 C3N-02592 PDA WXS tumor CPT0162760006 61953ee5-9be4-4e83-abae-1bc34aa7cbb0_wxs_gdc_realn.bam 70267238794 BAM harmonized CPTAC3 bc04e678-67f7-4638-9a99-885776094996 4e6d54986261a035d06c1ca2af5b8389 {"aliquot_tag": "ALQ_256a330d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.ANN_9675dc49.RNA-Seq.chimeric.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.chimeric.gdc_realn.bam 198910292 BAM chimeric harmonized CPTAC3 53a81f89-6a9e-4ce4-8c9b-0558a2e9a083 8b74951e7eb32cc8f6009936dac16528 {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.ANN_9675dc49.RNA-Seq.genomic.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.genomic.gdc_realn.bam 12716389018 BAM genomic harmonized CPTAC3 deed7771-1fd1-4f25-a643-a86979f2d3ab 657944565ed3b3be4cb0077e9af8739f {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.ANN_9675dc49.RNA-Seq.S3_L005_R1.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R1_001.fastq.gz 4800841678 FASTQ S3_L005_R1 submitted_unaligned CPTAC3 3df2a0b9-0800-444f-a464-382f1eaca300 c14f2ac59b9e263ddcea552e8d0773cb {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.ANN_9675dc49.RNA-Seq.S3_L005_R2.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R2_001.fastq.gz 5330813125 FASTQ S3_L005_R2 submitted_unaligned CPTAC3 1a53587a-e0d6-41de-971b-1436817632be 642d718dfc6fb7b9b7edbe0f8265a113 {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.ANN_9675dc49.RNA-Seq.transcriptome.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.transcriptome.gdc_realn.bam 13067117801 BAM transcriptome harmonized CPTAC3 cf383da8-5e35-4bd5-9f5d-9c3bd80184bc 3a3a668241d703b13b696a9071952cfb {"aliquot_tag": "ANN_9675dc49", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.DUP_110a78ab.WXS.T C3N-02594 PDA WXS tumor CPT0187640030 CPT0187640030.WholeExome.RP-1303.bam 25901101185 BAM submitted_aligned CPTAC3 d2511eee-669e-452a-b796-d7e063da27fc 37411912274708ca9dddd4e3bec27143 {"aliquot_tag": "DUP_110a78ab", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.DUP_110a78ab.WXS.T.hg38 C3N-02594 PDA WXS tumor CPT0187640030 dde2da8d-74d7-4efe-91a2-9455a8ce0277_wxs_gdc_realn.bam 35790397792 BAM harmonized CPTAC3 3bde91a6-15fc-42ae-989c-ecf18bd66124 d745055aa66add774050f47517a0c7f8 {"aliquot_tag": "DUP_110a78ab", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.DUP_538c8d9a.RNA-Seq.chimeric.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.chimeric.gdc_realn.bam 317783491 BAM chimeric harmonized CPTAC3 71d13ba8-e3e9-4809-a013-263ad3ba6e20 408149af3ef5331103625c133b0cea2e {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_538c8d9a.RNA-Seq.genomic.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.genomic.gdc_realn.bam 7353677296 BAM genomic harmonized CPTAC3 61d4614b-045b-4ecb-be16-2f093a1fb0b6 074370fba400c41bfc069c02c11b1a86 {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_538c8d9a.RNA-Seq.S10_L003_R1.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3380538059 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 3d612a4f-4fa0-4ac6-ac4a-1dc01ae3b6e1 c8279166a8685ce73107e52f616ade54 {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_538c8d9a.RNA-Seq.S10_L003_R2.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3693955184 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 c5bb9fd2-e3fa-4064-8660-88e7e8500c2f 7936a99eccf8f32ef970f43b4e3c56fc {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_538c8d9a.RNA-Seq.transcriptome.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.transcriptome.gdc_realn.bam 8109679865 BAM transcriptome harmonized CPTAC3 36a3bd72-203e-4fdf-ad27-55d1d53812e7 d69213018510f1fd29a8a0723a785e5c {"aliquot_tag": "DUP_538c8d9a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_6511a3f9.RNA-Seq.chimeric.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.chimeric.gdc_realn.bam 531914580 BAM chimeric harmonized CPTAC3 3edb1bbb-123c-442c-aa39-17a23463967d d3776c8c7d16056f1045973e3cd26b52 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_6511a3f9.RNA-Seq.genomic.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.genomic.gdc_realn.bam 9203055307 BAM genomic harmonized CPTAC3 6de7f96a-a9f2-46a7-8d34-412b6ced2a3d e81b8d60879fcf415918e97761a0a7ee {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_6511a3f9.RNA-Seq.S19_L006_R1.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R1_001.fastq.gz 4202715688 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 f0864d29-bcbe-411d-a4b2-642e28a958a3 45deb15487c315693ddb9873605fa3b1 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_6511a3f9.RNA-Seq.S19_L006_R2.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R2_001.fastq.gz 4465716068 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 b35f33fa-faa7-48ad-b608-914bd6e7bf6e 92e17fe43a1ac658351f25885f145045 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_6511a3f9.RNA-Seq.transcriptome.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.transcriptome.gdc_realn.bam 10432131536 BAM transcriptome harmonized CPTAC3 4368b6d7-9c24-4248-80ca-a085fdf2d8ba a2edbb429c4fde869b1a88f55ea67a36 {"aliquot_tag": "DUP_6511a3f9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02594.DUP_660d483d.WXS.T C3N-02594 PDA WXS tumor CPT0187640031 CPT0187640031.WholeExome.RP-1303.bam 29400549559 BAM submitted_aligned CPTAC3 060f38c1-cd10-44b7-850a-a5de5f0b5479 7b5c67805637e06aaee987e88a34db05 {"aliquot_tag": "DUP_660d483d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.DUP_660d483d.WXS.T.hg38 C3N-02594 PDA WXS tumor CPT0187640031 8214e73f-5332-4569-9f96-d9099fd112c3_wxs_gdc_realn.bam 40454753839 BAM harmonized CPTAC3 bbc00470-d5dc-4276-b1df-e9dd09dc776d fa0b56339df4fa5f3c3085db05ea7b77 {"aliquot_tag": "DUP_660d483d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02594.DUP_eaf53f21.WXS.N C3N-02594 PDA WXS blood_normal CPT0187700002 CPT0187700002.WholeExome.RP-1303.bam 36446945070 BAM submitted_aligned CPTAC3 b0f6783b-76a1-4bb5-8f2f-8cb20b494278 c29d2036900792dab7c59c241e8cbd06 {"aliquot_tag": "DUP_eaf53f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02594.DUP_eaf53f21.WXS.N.hg38 C3N-02594 PDA WXS blood_normal CPT0187700002 254a2cee-22d7-4d03-867a-a78b0ee78afa_wxs_gdc_realn.bam 49806469469 BAM harmonized CPTAC3 3133e6fc-60d7-400f-bc83-0a756ea002fe 463b8b0697380ef48b3ab4903bfeb1d1 {"aliquot_tag": "DUP_eaf53f21", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02595.MethArray.Green.T C3N-02595 UCEC Methylation_Array tumor CPT0181810007 203561450025_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b2e81e85-ffe6-4909-83da-5ba3a3002766 4dc55bfac01ec3808f472e341d0ef6f7 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.MethArray.Red.T C3N-02595 UCEC Methylation_Array tumor CPT0181810007 203561450025_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 967a558a-5b88-4239-aacb-c8b97f73bd44 3bffee10e3f7898b54a5b8330ab39886 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.miRNA-Seq.S35_L004_R1.T C3N-02595 UCEC miRNA-Seq tumor CPT0181810010 190508_UNC31-K00269_0215_BH7FYKBBXY_CATTTT_S35_L004_R1_001.unaln.bam 220335067 BAM S35_L004_R1 submitted_unaligned CPTAC3 14c1d43b-68c4-4cdd-a1cb-d244d3fcf31f 098968f349d9af630447c4a50400abf6 {"aliquot_tag": "ALQ_b206c113", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.miRNA-Seq.T.hg38 C3N-02595 UCEC miRNA-Seq tumor CPT0181810010 ce3d96ab-eada-49d1-9a5c-6d31b3eb6170_mirnaseq_gdc_realn.bam 253133999 BAM harmonized CPTAC3 b959229d-d654-4b0e-8a74-9de3985e1532 7802f9306cf03aded75ab17d9198b6fb {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.chimeric.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.chimeric.gdc_realn.bam 25164088 BAM chimeric harmonized CPTAC3 7c4bf1fe-a3d6-4abb-a4eb-c19acd7d0976 72bf6ab9561d64e79663fa1496ce64ff {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.chimeric.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.chimeric.gdc_realn.bam 17332744 BAM chimeric harmonized CPTAC3 beda5f5a-4fc5-46f9-bbae-aaa9ea076419 3caa6292ee03d1dcffd474e39a0111d7 {"aliquot_tag": "ALQ_5bbdbbdb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.genomic.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.genomic.gdc_realn.bam 6029734631 BAM genomic harmonized CPTAC3 9e02cc72-53ef-4693-a771-177ce2dffe28 272ee1cbcff9e95b30fd0dba541436d3 {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.genomic.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.genomic.gdc_realn.bam 11098152717 BAM genomic harmonized CPTAC3 7e2ef1bd-f1c4-424c-841b-77a1aea5c0b2 b1ea87b0c60dc13dc801cdbd89e1e298 {"aliquot_tag": "ALQ_5bbdbbdb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.S31_R1.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R1_001.fastq.gz 3512042391 FASTQ S31_R1 submitted_unaligned CPTAC3 e74c340f-5894-4818-8a0a-eb0042b026bc 5b3c4d85ff280281b1765726245d2fc6 {"aliquot_tag": "ALQ_5bbdbbdb", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.S31_R2.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R2_001.fastq.gz 3379384098 FASTQ S31_R2 submitted_unaligned CPTAC3 726830e3-7b38-447f-8f94-ee5ad3bc2419 44fac08f20c7c55f762bea676077beea {"aliquot_tag": "ALQ_5bbdbbdb", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.S8_L002_R1.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R1_001.fastq.gz 2826989732 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 a2db1e76-1ff7-4d03-a36b-e152b29e5bfa 43ca177496ed6c5fedddf67360d36db0 {"aliquot_tag": "ALQ_b206c113", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.S8_L002_R2.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R2_001.fastq.gz 3269626696 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 99c567b0-e990-42e3-b105-821e28c807f6 357e38b02fcddf639faac45c8a483be2 {"aliquot_tag": "ALQ_b206c113", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.transcriptome.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.transcriptome.gdc_realn.bam 7736082214 BAM transcriptome harmonized CPTAC3 decdc1d1-6984-40e4-8b40-7da87aa13da5 25300ed1cb29efb09a8e7e7f753399a6 {"aliquot_tag": "ALQ_b206c113", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.RNA-Seq.transcriptome.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.transcriptome.gdc_realn.bam 3486063938 BAM transcriptome harmonized CPTAC3 35b38fff-480d-4619-a5c0-a666634c1178 f8390fafbec1a877d6434cf209d5e23f {"aliquot_tag": "ALQ_5bbdbbdb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.WGS.N C3N-02595 UCEC WGS blood_normal CPT0181870002 CPT0181870002.WholeGenome.RP-1303.bam 84255972269 BAM submitted_aligned CPTAC3 df272482-6602-457e-bb65-5dff204503bf a8d684a83fdd69df38104a49e6062731 {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02595.WGS.N.hg38 C3N-02595 UCEC WGS blood_normal CPT0181870002 ef5d49da-558d-4e70-850a-6ab1e14e0391_wgs_gdc_realn.bam 125247712621 BAM harmonized CPTAC3 070e3515-28d4-4825-ac12-adf3000d483b e5892ea1629c01e2d25fb92e28093b89 {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02595.WGS.T C3N-02595 UCEC WGS tumor CPT0181810007 CPT0181810007.WholeGenome.RP-1303.bam 67121438251 BAM submitted_aligned CPTAC3 9f924144-8772-4059-8260-c4cc788e074b e6f9185477bee5642a2a572909e74882 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.WGS.T.hg38 C3N-02595 UCEC WGS tumor CPT0181810007 c746228f-3b12-4522-abe2-493c8806a8da_wgs_gdc_realn.bam 99496727012 BAM harmonized CPTAC3 d0917318-5a13-4fd5-8977-8ae39658e478 0030860e391083f9e35a65d03d2adaf6 {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.WXS.N C3N-02595 UCEC WXS blood_normal CPT0181870002 CPT0181870002.WholeExome.RP-1303.bam 21205446998 BAM submitted_aligned CPTAC3 fe88f3ec-7e64-4c1a-9f08-e9528207d5f3 724371598f6955c0abed0bf82933e505 {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02595.WXS.N.hg38 C3N-02595 UCEC WXS blood_normal CPT0181870002 ef5d49da-558d-4e70-850a-6ab1e14e0391_wxs_gdc_realn.bam 28824089389 BAM harmonized CPTAC3 3c3493c6-d9db-44a8-82ed-a4cb77378923 1d46771d22b85dffd1cc0c879648aa4b {"aliquot_tag": "ALQ_ca5364de", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02595.WXS.T C3N-02595 UCEC WXS tumor CPT0181810007 CPT0181810007.WholeExome.RP-1303.bam 22234897265 BAM submitted_aligned CPTAC3 a6fe5f3b-b40c-4c86-ae18-3d60ce8053ed a62143573cc364d684ab5ab2cf0b274b {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02595.WXS.T.hg38 C3N-02595 UCEC WXS tumor CPT0181810007 c746228f-3b12-4522-abe2-493c8806a8da_wxs_gdc_realn.bam 31262804788 BAM harmonized CPTAC3 5bb6a580-8481-4e1a-afce-d2437e1a6b5b 3e05088ac4569dc0e2e65b8de14816ee {"aliquot_tag": "ALQ_357965f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.MethArray.Green.T C3N-02598 UCEC Methylation_Array tumor CPT0187960007 203561620086_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 4d766fc9-ee61-43e5-b845-4616026ed22f 69eb6ac8cb87a4c2cbc728163a6382ce {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.MethArray.Red.T C3N-02598 UCEC Methylation_Array tumor CPT0187960007 203561620086_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 d0de1503-1209-4fee-87e2-5f7c23417e23 bed5ddb96aa8169ad9260f1589a68466 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.miRNA-Seq.S20_L003_R1.T C3N-02598 UCEC miRNA-Seq tumor CPT0187960010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 234211367 BAM S20_L003_R1 submitted_unaligned CPTAC3 e3679da6-8b2d-4d8c-bead-c4cd6b21a0fd 364da1922073e6fbb5c359c0dd0a8d95 {"aliquot_tag": "ALQ_a8aafb9c", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.miRNA-Seq.T.hg38 C3N-02598 UCEC miRNA-Seq tumor CPT0187960010 72a58292-602e-4022-b008-d2a867a9b1ad_mirnaseq_gdc_realn.bam 269775854 BAM harmonized CPTAC3 8b872b99-f00c-4ca5-a403-664d271db087 402e5f6162294d4c6a03820ca2e92653 {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.chimeric.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.chimeric.gdc_realn.bam 30681214 BAM chimeric harmonized CPTAC3 ce3c4f85-211f-4d0b-b3ad-a03b6a094ca3 ba206d345c9bebc6180d8de93b1c1875 {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.chimeric.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.chimeric.gdc_realn.bam 38800441 BAM chimeric harmonized CPTAC3 1479c6e5-f711-42f7-8de0-7c2d9ff63b75 02a72663d054513ebede15d74cf80a26 {"aliquot_tag": "ALQ_1c1dc10b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.genomic.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.genomic.gdc_realn.bam 7425033694 BAM genomic harmonized CPTAC3 13ca9fa7-a589-4c8f-868e-754352b2bc41 3bd27b151000e1b23a988a3ac5810e9a {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.genomic.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.genomic.gdc_realn.bam 15176021850 BAM genomic harmonized CPTAC3 92e9a23d-3670-4a5f-ab69-4769c0f1d72d 1ffeba00bee70c58bb0a8a3baa29a24a {"aliquot_tag": "ALQ_1c1dc10b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.S24_L006_R1.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R1_001.fastq.gz 3501334415 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 ed069b3a-4f43-4cf7-9618-7146440a4d5a 5f1b5b99bd6eee5f46b01ba747673220 {"aliquot_tag": "ALQ_a8aafb9c", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.S24_L006_R2.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R2_001.fastq.gz 4042694872 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 70c7569f-ba60-4436-b121-8e2c7594613c 21b5c930ab9e79be73a646158a4d2ca9 {"aliquot_tag": "ALQ_a8aafb9c", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.S28_R1.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R1_001.fastq.gz 4876552121 FASTQ S28_R1 submitted_unaligned CPTAC3 5597d62b-d0ba-41f1-85e5-e0789d4c126e cf8a62d6fb8e90595e8690d7a67cb26f {"aliquot_tag": "ALQ_1c1dc10b", "sample": "S28", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.S28_R2.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R2_001.fastq.gz 4715268363 FASTQ S28_R2 submitted_unaligned CPTAC3 44bcb81f-cda0-42cb-9978-6653067da8ac bcd0c85ef361b8c6f9927694f8b7ae26 {"aliquot_tag": "ALQ_1c1dc10b", "sample": "S28", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.transcriptome.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.transcriptome.gdc_realn.bam 11662675624 BAM transcriptome harmonized CPTAC3 2fc5cf67-3db6-462e-b801-edb530869a00 ccaacf490d2729f08a8f6a4c882d314e {"aliquot_tag": "ALQ_a8aafb9c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.RNA-Seq.transcriptome.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.transcriptome.gdc_realn.bam 4221987176 BAM transcriptome harmonized CPTAC3 7fa7edcf-7819-4391-b3a6-effe21c5ad5a dfbd7c9ca0e5937a5c8aad12f4dbd917 {"aliquot_tag": "ALQ_1c1dc10b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.WGS.N C3N-02598 UCEC WGS blood_normal CPT0188020002 CPT0188020002.WholeGenome.RP-1303.bam 79205612629 BAM submitted_aligned CPTAC3 bb5afaf9-4d7c-48c2-a08f-55067928dc56 c34d8e1eb0dd64049fd8fc0fbeac7445 {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02598.WGS.N.hg38 C3N-02598 UCEC WGS blood_normal CPT0188020002 aa9c04dc-d109-4e3c-96d3-814f821ef624_wgs_gdc_realn.bam 116719229925 BAM harmonized CPTAC3 60f817da-3428-402e-87a7-fc81b5f9b243 4ebbed58061c3c2d0de53e7861f2e1dd {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02598.WGS.T C3N-02598 UCEC WGS tumor CPT0187960007 CPT0187960007.WholeGenome.RP-1303.bam 72537021823 BAM submitted_aligned CPTAC3 3c6c9374-2df9-411c-9e0d-44058621ddb4 da4c2c3be4f3bbe1ecaaf2f2969c8248 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.WGS.T.hg38 C3N-02598 UCEC WGS tumor CPT0187960007 12bf4120-7e3c-48d9-b838-f3eeb9058dcd_wgs_gdc_realn.bam 106226696905 BAM harmonized CPTAC3 4e80ff51-ed80-492a-8278-a284a5a28dea ee86c823fce7496939abe657e1367bda {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.WXS.N C3N-02598 UCEC WXS blood_normal CPT0188020002 CPT0188020002.WholeExome.RP-1303.bam 20512348087 BAM submitted_aligned CPTAC3 9e72945b-2c94-4904-a5c1-1b0c7d3eacd8 ac54a162f14db5653bd954097203336c {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02598.WXS.N.hg38 C3N-02598 UCEC WXS blood_normal CPT0188020002 aa9c04dc-d109-4e3c-96d3-814f821ef624_wxs_gdc_realn.bam 28357812603 BAM harmonized CPTAC3 a9f8a244-fa91-44e1-97b6-45bec7895200 84b66fd4e1b455fb14ea6b2db2f4a27c {"aliquot_tag": "ALQ_7b782c10", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02598.WXS.T C3N-02598 UCEC WXS tumor CPT0187960007 CPT0187960007.WholeExome.RP-1303.bam 26211119148 BAM submitted_aligned CPTAC3 3c484e79-e1a4-4b5a-b0f7-d8330f642ab3 03ca0202625fdc2b0891c11fd8a140c3 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02598.WXS.T.hg38 C3N-02598 UCEC WXS tumor CPT0187960007 12bf4120-7e3c-48d9-b838-f3eeb9058dcd_wxs_gdc_realn.bam 37184034002 BAM harmonized CPTAC3 8a1de291-39da-4eaa-8a72-927b1a1d5bf1 23d33bc5fab2b03fbe022d20c6707b06 {"aliquot_tag": "ALQ_2fd55f7e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.MethArray.Green.T C3N-02599 GBM Methylation_Array tumor CPT0224840006 204367460011_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d0b9db37-e1db-4963-87ab-470d2382b585 4462c0256ba0a8f92a957597b6ee3b91 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.MethArray.Red.T C3N-02599 GBM Methylation_Array tumor CPT0224840006 204367460011_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 f4746f63-04f0-447a-90d5-fe95160b61e4 081bd120d47a555981eefcdbbf2d9298 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.miRNA-Seq.S24_L001_R1.T C3N-02599 GBM miRNA-Seq tumor CPT0224840013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 195500706 BAM S24_L001_R1 submitted_unaligned CPTAC3 e6e5d26d-2f56-46ab-9d8c-e0b5cb2ffd62 6a2878c6f2c3fc8cf621644a76e9ca2e {"aliquot_tag": "ALQ_199a1073", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.miRNA-Seq.T.hg38 C3N-02599 GBM miRNA-Seq tumor CPT0224840013 ec6c6d0e-2b20-4ad9-9cb1-5c7e7fc03453_mirnaseq_gdc_realn.bam 216716399 BAM harmonized CPTAC3 f8ddc7c6-3319-4b1a-b72d-53c3dd86f395 fc350138b7593157d216570b8fcebdf3 {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.RNA-Seq.chimeric.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.chimeric.gdc_realn.bam 24116823 BAM chimeric harmonized CPTAC3 8dc0c318-12cc-47da-8fb4-7d7c2ef1daa7 4df725a9bd9f96309ee229c08c6f4f38 {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.RNA-Seq.genomic.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.genomic.gdc_realn.bam 6979980365 BAM genomic harmonized CPTAC3 267749f0-8796-49d9-9d9d-5640ff45d9d2 b48b9a5fc06d6a847146daec243cc4f0 {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.RNA-Seq.S19_L005_R1.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R1_001.fastq.gz 3286785831 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 48cfa054-e4e7-4707-8f4f-1464920cd330 183c5e235a9c00136eb7a9ac4b449744 {"aliquot_tag": "ALQ_199a1073", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.RNA-Seq.S19_L005_R2.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 f34ce994-d55e-49cb-bb17-93e3a4874810 435d813baa812c7764a77ba5509cf851 {"aliquot_tag": "ALQ_199a1073", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.RNA-Seq.transcriptome.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.transcriptome.gdc_realn.bam 8384008486 BAM transcriptome harmonized CPTAC3 1a32ba3a-3b5f-4dc4-8d34-e730227e221e 2b6138f7b61d8562fd82a6f47e58e09e {"aliquot_tag": "ALQ_199a1073", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.WGS.N C3N-02599 GBM WGS blood_normal CPT0224860002 CPT0224860002.WholeGenome.RP-2158.bam 24996003121 BAM submitted_aligned CPTAC3 474416f9-0b17-4e8b-8ebc-f81fbc3f399b 0ee5ef3b4fc3c1daeb44c0036180d6b3 {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02599.WGS.N.hg38 C3N-02599 GBM WGS blood_normal CPT0224860002 834e776f-c515-46ba-b94e-ae7afe7663ea_wgs_gdc_realn.bam 74853169740 BAM harmonized CPTAC3 68d465da-3999-4a59-8573-fe84d4170d38 53095a2d5416d2e7c9cfce94f52df618 {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02599.WGS.T C3N-02599 GBM WGS tumor CPT0224840006 CPT0224840006.WholeGenome.RP-2158.bam 23281634761 BAM submitted_aligned CPTAC3 632b83d0-1085-4038-a036-946722d426e8 4387845b184a7920ef67383b6b8ba58f {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.WGS.T.hg38 C3N-02599 GBM WGS tumor CPT0224840006 2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wgs_gdc_realn.bam 65754798136 BAM harmonized CPTAC3 1b532f93-73c6-4ace-b9fc-2ac02ba09301 9902bf5f8545c6e5b737b96a420f94c7 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.WXS.N C3N-02599 GBM WXS blood_normal CPT0224860002 CPT0224860002.WholeExome.RP-1303.bam 26628614397 BAM submitted_aligned CPTAC3 80e2e08c-f3ed-42f1-bbd8-5b5a5e21986f 10a323162cb7e3f24d72183e163f493b {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02599.WXS.N.hg38 C3N-02599 GBM WXS blood_normal CPT0224860002 834e776f-c515-46ba-b94e-ae7afe7663ea_wxs_gdc_realn.bam 37230237735 BAM harmonized CPTAC3 5aab09ad-6c94-42a4-bcc2-7ee916573a28 b9f07004e59e5905afaca07c88ab6c91 {"aliquot_tag": "ALQ_d4642c4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02599.WXS.T C3N-02599 GBM WXS tumor CPT0224840006 CPT0224840006.WholeExome.RP-1303.bam 20153296974 BAM submitted_aligned CPTAC3 15239510-48e4-45b0-9dd0-e37ea89ff0fd 0a312e533d0d71ee50f32494955b6e99 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02599.WXS.T.hg38 C3N-02599 GBM WXS tumor CPT0224840006 2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wxs_gdc_realn.bam 28203970919 BAM harmonized CPTAC3 9d643f49-1997-472d-817d-f06236fda307 00ead10f7193d4e6153f4e367d82c7b9 {"aliquot_tag": "ALQ_70ebd5bd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.MethArray.Green.T C3N-02631 UCEC Methylation_Array tumor CPT0181960007 203561450030_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1086a9a9-0c3a-4553-9c5c-ef4c651c4b4d 8c4ca0c62ffbe2e052dc2ae9c0b72307 {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.MethArray.Red.T C3N-02631 UCEC Methylation_Array tumor CPT0181960007 203561450030_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 844c57ea-645a-4c82-b89f-3ce088195a8f d7359aff22f78544089807d810e2806f {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.miRNA-Seq.S36_L004_R1.T C3N-02631 UCEC miRNA-Seq tumor CPT0181960010 190508_UNC31-K00269_0215_BH7FYKBBXY_CCAACA_S36_L004_R1_001.unaln.bam 173046508 BAM S36_L004_R1 submitted_unaligned CPTAC3 62d16d52-db5d-4d6f-9eec-7da85e22851c 8eb16c55485ff91a3dfdc47130d2fb73 {"aliquot_tag": "ALQ_cb7acea6", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.miRNA-Seq.T.hg38 C3N-02631 UCEC miRNA-Seq tumor CPT0181960010 2ad2eb08-3b2d-4025-8030-b3b162877f95_mirnaseq_gdc_realn.bam 197395959 BAM harmonized CPTAC3 522c5e65-3615-40f2-9e0e-7d102f58c06b dfcd5e6edd28a0f98697f85916bfb995 {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.chimeric.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.chimeric.gdc_realn.bam 50852580 BAM chimeric harmonized CPTAC3 fa77bb3f-1a22-4e31-8a3e-927d5d833a78 3750cbf67490b4205ba99772200dad4c {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.chimeric.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.chimeric.gdc_realn.bam 198330909 BAM chimeric harmonized CPTAC3 aec80ae9-009b-453c-8d8b-dd4742e4671d 8cf3b81e925873574ceb37e8b2182e29 {"aliquot_tag": "ALQ_e7a5c817", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.genomic.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.genomic.gdc_realn.bam 10456610181 BAM genomic harmonized CPTAC3 1e14009d-b921-47a0-98e6-f2ad55a5440f 0752b313bf339677cacae3100af2401f {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.genomic.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.genomic.gdc_realn.bam 8595821724 BAM genomic harmonized CPTAC3 245c2f7f-c1e5-4f5a-b740-92ce920f0917 bb6e742b38d3c578ceee9a9ec012df39 {"aliquot_tag": "ALQ_e7a5c817", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.S20_R1.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R1_001.fastq.gz 4642136949 FASTQ S20_R1 submitted_unaligned CPTAC3 64680036-719e-49bf-a651-840cc7c87ea7 a1f8a55964511ef54910db93cef08eec {"aliquot_tag": "ALQ_e7a5c817", "sample": "S20", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.S20_R2.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R2_001.fastq.gz 4814916254 FASTQ S20_R2 submitted_unaligned CPTAC3 aadd2f47-382b-4aa1-a382-36d1c0d60b16 c2678e7c33c366144f9a89eb1edbba62 {"aliquot_tag": "ALQ_e7a5c817", "sample": "S20", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.S7_L002_R1.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R1_001.fastq.gz 5128385989 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 b817e43b-48e8-4cda-b993-5ea7428bdf5e 09ab6306dc60ea144fc1a77ee3e31f9e {"aliquot_tag": "ALQ_cb7acea6", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.S7_L002_R2.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R2_001.fastq.gz 5777961856 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 4d7ddade-b86d-4a41-9cd3-27a97288cebe 425a8f3b6e6921c3b4d39bf883c100e5 {"aliquot_tag": "ALQ_cb7acea6", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.transcriptome.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.transcriptome.gdc_realn.bam 12105429342 BAM transcriptome harmonized CPTAC3 7b6303ee-84c7-4a68-9daf-bcc12d55fc46 0efc6530888979a8f5e1f2728f54528a {"aliquot_tag": "ALQ_cb7acea6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.RNA-Seq.transcriptome.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.transcriptome.gdc_realn.bam 3403640347 BAM transcriptome harmonized CPTAC3 a4470ceb-db90-4d13-a340-ac678ef61e12 99ba3cdf085c9ba996db694d08f2858c {"aliquot_tag": "ALQ_e7a5c817", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.WGS.N C3N-02631 UCEC WGS blood_normal CPT0182010002 CPT0182010002.WholeGenome.RP-1303.bam 71191712013 BAM submitted_aligned CPTAC3 4a5a3ff5-b326-4518-877b-13c262344f40 f559eceb8562c237c4f336f8d3401cf2 {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02631.WGS.N.hg38 C3N-02631 UCEC WGS blood_normal CPT0182010002 e3f73e35-fe83-48f7-9a6a-2d49f4b46a7d_wgs_gdc_realn.bam 103087909289 BAM harmonized CPTAC3 df09c8cd-57a3-4c2e-9449-4178ea2e0a25 ae9e268a34c56261591892eedd362a98 {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02631.WGS.T C3N-02631 UCEC WGS tumor CPT0181960007 CPT0181960007.WholeGenome.RP-1303.bam 64176906912 BAM submitted_aligned CPTAC3 69c75d77-e36f-4f38-acd6-ad646c2fd2ca 98c7a9caef15715a2b540be9e23bbbff {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.WGS.T.hg38 C3N-02631 UCEC WGS tumor CPT0181960007 79b230d0-788f-4ad3-8dce-89039234db0c_wgs_gdc_realn.bam 91406736937 BAM harmonized CPTAC3 19d3b007-3217-4014-8ad9-bd4d3c8f260d 2cc3c2a894f56b1343a20d2a0d4d3632 {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.WXS.N C3N-02631 UCEC WXS blood_normal CPT0182010002 CPT0182010002.WholeExome.RP-1303.bam 20895500107 BAM submitted_aligned CPTAC3 06213f2d-8d9b-436d-a980-5fa21382385a 5b080caf24bec82ab04dd4abc63ff1dd {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02631.WXS.N.hg38 C3N-02631 UCEC WXS blood_normal CPT0182010002 e3f73e35-fe83-48f7-9a6a-2d49f4b46a7d_wxs_gdc_realn.bam 28067240762 BAM harmonized CPTAC3 707c5e3f-c634-4570-9325-7e441b1f7578 2fb8d540d84e27b8b9ee5f545ba7c0de {"aliquot_tag": "ALQ_98a8098e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02631.WXS.T C3N-02631 UCEC WXS tumor CPT0181960007 CPT0181960007.WholeExome.RP-1303.bam 27773150496 BAM submitted_aligned CPTAC3 2b0abe31-3bbe-4d00-a8ff-9bb255af851f 0c3e3daad67f4da7be440cc5b485902c {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02631.WXS.T.hg38 C3N-02631 UCEC WXS tumor CPT0181960007 79b230d0-788f-4ad3-8dce-89039234db0c_wxs_gdc_realn.bam 37855573612 BAM harmonized CPTAC3 4cbf0f93-10a6-4d5a-b040-88fecbca03cb 4d818b52c710cf320c068b7cc781126c {"aliquot_tag": "ALQ_4c056a44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.MethArray.Green.T C3N-02632 UCEC Methylation_Array tumor CPT0182020007 203561620040_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 89d77ae1-284e-45f7-897c-a5f8b53adb13 c5a7b4fea7479405f8a30485f0d365ee {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.MethArray.Red.T C3N-02632 UCEC Methylation_Array tumor CPT0182020007 203561620040_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 d03a4907-4770-4af4-9699-ad0b257b4ca2 604207a442e14b99da9d11980888b85f {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.miRNA-Seq.S37_L004_R1.T C3N-02632 UCEC miRNA-Seq tumor CPT0182020010 190508_UNC31-K00269_0215_BH7FYKBBXY_CGGAAT_S37_L004_R1_001.unaln.bam 250826802 BAM S37_L004_R1 submitted_unaligned CPTAC3 a82e91f9-aa9a-41c2-82eb-f366a54cd1cb 4a29558524bc48ad9a00f37aac2131c9 {"aliquot_tag": "ALQ_281d2333", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.miRNA-Seq.T.hg38 C3N-02632 UCEC miRNA-Seq tumor CPT0182020010 fa9642a2-cdca-4e3a-ad10-8089e6d94464_mirnaseq_gdc_realn.bam 289195071 BAM harmonized CPTAC3 6cf34941-4d84-481f-a6ff-5ac8568b5e37 f105dd26b9bcffa367e39cc3983ab3cc {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.chimeric.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.chimeric.gdc_realn.bam 31342399 BAM chimeric harmonized CPTAC3 2be2a066-6eac-414f-8ed6-8c382e5c7ed0 009a1c73852ebaa9b2ccd9b23e386437 {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.chimeric.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.chimeric.gdc_realn.bam 119140328 BAM chimeric harmonized CPTAC3 60271d4d-b1ad-48cc-abc8-7f2569f7c390 565d8693632f4a7f21b47812490078ce {"aliquot_tag": "ALQ_9d659b77", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.genomic.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.genomic.gdc_realn.bam 7110081278 BAM genomic harmonized CPTAC3 59d1000e-5e17-4014-901c-696cc22ffeac b0b388fc8c6fb53094234db2bc4296ba {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.genomic.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.genomic.gdc_realn.bam 7658445606 BAM genomic harmonized CPTAC3 a62b2538-02df-459f-a182-c1231f33c691 77a840c73480c62e86a4b282fc29fbd0 {"aliquot_tag": "ALQ_9d659b77", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.S3_L001_R1.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R1_001.fastq.gz 3415264967 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 1f16aa6a-8d94-4166-9256-c5feb6f52b4e 2f87697196deee9e8fcfbdf4f8d151de {"aliquot_tag": "ALQ_281d2333", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.S3_L001_R2.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R2_001.fastq.gz 3902068531 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 7cc71d12-47fa-4e6d-ba71-c4d73d11bf7b 3337996ee7c102190386beff04d67e16 {"aliquot_tag": "ALQ_281d2333", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.S7_R1.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R1_001.fastq.gz 4137077202 FASTQ S7_R1 submitted_unaligned CPTAC3 f7689084-6616-4197-bed3-c7a7e7ecc1e5 dc7a48ebab3966eac86c30a0a99d1038 {"aliquot_tag": "ALQ_9d659b77", "sample": "S7", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.S7_R2.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R2_001.fastq.gz 4423394746 FASTQ S7_R2 submitted_unaligned CPTAC3 793f9aac-2b9e-4621-bc29-2ba889130e0a 5939e428d03c86db4ee04972b04c8f30 {"aliquot_tag": "ALQ_9d659b77", "sample": "S7", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.transcriptome.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.transcriptome.gdc_realn.bam 8431013885 BAM transcriptome harmonized CPTAC3 adcab6f2-1bf5-4ff9-b5cb-7be3f64efd04 e1308e41480c6a5c693cb199fd3c20b5 {"aliquot_tag": "ALQ_281d2333", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.RNA-Seq.transcriptome.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.transcriptome.gdc_realn.bam 3883758530 BAM transcriptome harmonized CPTAC3 87759341-cc30-4ce5-b663-9a126409e444 53f17ffaf6c3b858a9afaa481f34005d {"aliquot_tag": "ALQ_9d659b77", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.WGS.N C3N-02632 UCEC WGS blood_normal CPT0182060002 CPT0182060002.WholeGenome.RP-1303.bam 55782898233 BAM submitted_aligned CPTAC3 43ed19cd-ad45-452c-a9cd-81935661b0ac bdf2c2a8748d75e98f3fddcad1035839 {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02632.WGS.N.hg38 C3N-02632 UCEC WGS blood_normal CPT0182060002 fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wgs_gdc_realn.bam 81865411035 BAM harmonized CPTAC3 8f290dc8-ddeb-469e-a206-e684a6d46bff 63b3051d65557c9c585f905798f5df90 {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02632.WGS.T C3N-02632 UCEC WGS tumor CPT0182020007 CPT0182020007.WholeGenome.RP-1303.bam 81508660341 BAM submitted_aligned CPTAC3 663d75ad-ff59-41da-a372-fb043e6aad1e c7e4b6f8a2759ee55f6de7fb5b67ca21 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.WGS.T.hg38 C3N-02632 UCEC WGS tumor CPT0182020007 3e771046-4538-4fee-a130-0f28d72c7980_wgs_gdc_realn.bam 121486148375 BAM harmonized CPTAC3 5521ec1c-62b5-4597-92aa-98d826f63e9b e514a0902a7a7635d6996d24a3cf4e32 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.WXS.N C3N-02632 UCEC WXS blood_normal CPT0182060002 CPT0182060002.WholeExome.RP-1303.bam 23266297117 BAM submitted_aligned CPTAC3 4151c545-8d4d-4f42-a3cb-c79b6adda442 3c1303be59ec50d5c3e2c89da8f598ae {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02632.WXS.N.hg38 C3N-02632 UCEC WXS blood_normal CPT0182060002 fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wxs_gdc_realn.bam 31765484234 BAM harmonized CPTAC3 ad81e092-13f4-445d-bf08-b5d1854f9c0d 6a608100865be107abb298b18ee1fc8a {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02632.WXS.T C3N-02632 UCEC WXS tumor CPT0182020007 CPT0182020007.WholeExome.RP-1303.bam 22965123724 BAM submitted_aligned CPTAC3 f835131e-116e-40f9-93e8-1bfeadb98198 70f9b602b3d05c844d6580db23759791 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02632.WXS.T.hg38 C3N-02632 UCEC WXS tumor CPT0182020007 3e771046-4538-4fee-a130-0f28d72c7980_wxs_gdc_realn.bam 32031498465 BAM harmonized CPTAC3 19beb918-4541-47e8-a6d6-00316f87a698 99290500ab0ae74a8b21329367dc7f54 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.MethArray.Green.T C3N-02635 UCEC Methylation_Array tumor CPT0182070007 203561620049_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9585049c-44a9-4b58-b111-f094ef70e6a9 0bd67aac22f5f612bff548f059e38431 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.MethArray.Red.T C3N-02635 UCEC Methylation_Array tumor CPT0182070007 203561620049_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 023ac084-13fd-400a-82fd-828a611cbd78 7eb27b987f2901526f7372523d47b5f2 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.miRNA-Seq.S13_L001_R1.T C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 209090682 BAM S13_L001_R1 submitted_unaligned CPTAC3 10d4e0ce-d873-45ad-bee4-58e0759e6509 c354fee5285dcc87a45d91caaafd653c {"aliquot_tag": "ALQ_e0fdac43", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.miRNA-Seq.T.hg38 C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 79340e56-2474-4449-87fd-5b1eb6fd1096_mirnaseq_gdc_realn.bam 232822963 BAM harmonized CPTAC3 6b1e0e65-c63d-4ccb-b038-20ede1fd92bd dbb5891c9d829e0c40979520b56856d0 {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.chimeric.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.chimeric.gdc_realn.bam 41777003 BAM chimeric harmonized CPTAC3 769401a5-c77d-471c-8daf-e672102c83af 892987b6e5e8fe57651ada8806fc7f1a {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.chimeric.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.chimeric.gdc_realn.bam 126056275 BAM chimeric harmonized CPTAC3 17689245-4364-4c7e-a5c1-c8595f71e8e9 d1ea5c566a55f7d6bfe1fb28b428617c {"aliquot_tag": "ALQ_d979bd72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.genomic.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.genomic.gdc_realn.bam 10205714657 BAM genomic harmonized CPTAC3 968393b2-8d06-4ec0-94b7-e2a0a89cbf8a 8817b700ade3a8b16b7cbb5727e3f147 {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.genomic.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.genomic.gdc_realn.bam 6324272588 BAM genomic harmonized CPTAC3 093c597c-8b3a-4082-ae26-12aadae240d2 78aa5617112cc264bc953542e3f05d8b {"aliquot_tag": "ALQ_d979bd72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.S25_R1.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R1_001.fastq.gz 4371602771 FASTQ S25_R1 submitted_unaligned CPTAC3 ffaaa415-c2e6-4105-8b98-118b251eff9c 818484738635f6216c59396dc351c226 {"aliquot_tag": "ALQ_d979bd72", "sample": "S25", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.S25_R2.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R2_001.fastq.gz 4531988342 FASTQ S25_R2 submitted_unaligned CPTAC3 32b68fb6-e6ff-4fef-a1a8-943c917400e3 9d34da620d0759e07b4c39e50940b4a9 {"aliquot_tag": "ALQ_d979bd72", "sample": "S25", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.S32_L005_R1.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R1_001.fastq.gz 4970384764 FASTQ S32_L005_R1 submitted_unaligned CPTAC3 9fbae31c-9106-4246-b046-90893a57fc4e 24667d9de62a0a557b28542e55700a29 {"aliquot_tag": "ALQ_e0fdac43", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.S32_L005_R2.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R2_001.fastq.gz 5725054804 FASTQ S32_L005_R2 submitted_unaligned CPTAC3 c3a418a6-fe2a-484f-8094-eb9bfb0912c3 8f4288469924b85f411507b56b70ed1e {"aliquot_tag": "ALQ_e0fdac43", "sample": "S32", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.transcriptome.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.transcriptome.gdc_realn.bam 14011844474 BAM transcriptome harmonized CPTAC3 d670b17f-22a1-4caa-bbb7-56ed1f5e63a4 6f8945aff0fd9dbbf07f3ab1e34611bc {"aliquot_tag": "ALQ_e0fdac43", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.RNA-Seq.transcriptome.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.transcriptome.gdc_realn.bam 4373250118 BAM transcriptome harmonized CPTAC3 1db0100a-6174-4c8d-a73f-fa886ab1393d cfa5a00a1d2879475bc915b24cacc8a4 {"aliquot_tag": "ALQ_d979bd72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.WGS.N C3N-02635 UCEC WGS blood_normal CPT0182130002 CPT0182130002.WholeGenome.RP-1303.bam 58388704721 BAM submitted_aligned CPTAC3 b7c5f0d6-4923-4170-8d60-b51c7edc7c24 3ab77bbe7de5cef26792de185dd77177 {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02635.WGS.N.hg38 C3N-02635 UCEC WGS blood_normal CPT0182130002 4720b4fd-df6b-43ad-b211-636f3dc15cd3_wgs_gdc_realn.bam 85215921322 BAM harmonized CPTAC3 f2ba4382-5fdf-4ea0-9a3e-547241605603 64b849937f3e64aafc1a8d4bf882a633 {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02635.WGS.T C3N-02635 UCEC WGS tumor CPT0182070007 CPT0182070007.WholeGenome.RP-1303.bam 70186343500 BAM submitted_aligned CPTAC3 f16fbf6d-e823-4efb-9618-049412f444db 5815906fadbac013245b1a9d1134e3e2 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.WGS.T.hg38 C3N-02635 UCEC WGS tumor CPT0182070007 2317f3c2-95b8-4bd8-a233-cc283ba04322_wgs_gdc_realn.bam 104887210447 BAM harmonized CPTAC3 cfff0772-0b61-40e0-a2c7-f60a88c0522a 296e1c23ae4250d5d5327d3d4f2a247d {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.WXS.N C3N-02635 UCEC WXS blood_normal CPT0182130002 CPT0182130002.WholeExome.RP-1303.bam 21686210928 BAM submitted_aligned CPTAC3 eb952386-e3be-4dd0-b4f6-68518a06e21f 72a0e298c643a6c0e59719976cbeef39 {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02635.WXS.N.hg38 C3N-02635 UCEC WXS blood_normal CPT0182130002 4720b4fd-df6b-43ad-b211-636f3dc15cd3_wxs_gdc_realn.bam 29516093308 BAM harmonized CPTAC3 0436b1c4-11a1-44d1-bcfa-5726382e554a 335cbf7c3a4c4cbcd34358cb2112b94c {"aliquot_tag": "ALQ_2934894b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02635.WXS.T C3N-02635 UCEC WXS tumor CPT0182070007 CPT0182070007.WholeExome.RP-1303.bam 25972780515 BAM submitted_aligned CPTAC3 2a6a9332-c049-4399-b02e-a2efc6d29e78 539658e7a3b68bd56da1d05a7b2f1b26 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02635.WXS.T.hg38 C3N-02635 UCEC WXS tumor CPT0182070007 2317f3c2-95b8-4bd8-a233-cc283ba04322_wxs_gdc_realn.bam 36209004239 BAM harmonized CPTAC3 93143262-5e7b-445a-a15d-c42dff614bfe 2fd11db814a64bf12a0752e4970a5730 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.MethArray.Green.T C3N-02636 UCEC Methylation_Array tumor CPT0182150006 203561620012_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 dfd41da1-c607-4fdf-8532-3e1e4a0d54f5 bd75ed53b32d8c848ae0379acac479d3 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.MethArray.Red.T C3N-02636 UCEC Methylation_Array tumor CPT0182150006 203561620012_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 e04fad7f-cb79-4edf-a98e-29007ff601c5 d112e8c422becf8269920fb175ae8f06 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.miRNA-Seq.S42_L002_R1.T C3N-02636 UCEC miRNA-Seq tumor CPT0182150009 190813_UNC32-K00270_0196_AH5MCWBBXY_AGTCAA_S42_L002_R1_001.unaln.bam 149722495 BAM S42_L002_R1 submitted_unaligned CPTAC3 fb2d6b14-bd65-4a4b-9065-531b7fcc8ced 70ac41fe85d8f4285db4bb3f8eb7d856 {"aliquot_tag": "ALQ_31a6a563", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.miRNA-Seq.T.hg38 C3N-02636 UCEC miRNA-Seq tumor CPT0182150009 eca6d6e9-6c4a-4a13-80f3-edfaf83c246d_mirnaseq_gdc_realn.bam 172033558 BAM harmonized CPTAC3 114f40bc-9112-47f7-8249-8fdd6d915343 bbb5faf367de061890a8687c7b11ea1a {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.chimeric.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.chimeric.gdc_realn.bam 276032198 BAM chimeric harmonized CPTAC3 d5cae38d-d7a5-4fc6-9b35-93af5a6ac651 f81e6522a98cf71b30bb49c97055a390 {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.chimeric.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.chimeric.gdc_realn.bam 167830669 BAM chimeric harmonized CPTAC3 83db4c6e-9b8d-4ea9-b623-e1c579f649ae 02f6959f42b74bd51c2d02958c0b90b4 {"aliquot_tag": "ALQ_2cf91bb2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.genomic.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.genomic.gdc_realn.bam 8158293458 BAM genomic harmonized CPTAC3 019ddb8e-d313-49c5-93e9-7f10b933fe6f bfc9ab3525e8ae7e18a78cc2dd49defa {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.genomic.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.genomic.gdc_realn.bam 7817837155 BAM genomic harmonized CPTAC3 bb803f61-c1f5-4836-8fd9-3169e79ef164 08e4f524779da633eb92c58981e5a3cf {"aliquot_tag": "ALQ_2cf91bb2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.S20_L006_R1.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R1_001.fastq.gz 3095148371 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 eaf9eb0b-a6d4-46e4-a16b-236286596dac b632dbd12df413c4fc9e12e04cc59685 {"aliquot_tag": "ALQ_31a6a563", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.S20_L006_R2.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R2_001.fastq.gz 3181532702 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 d22260cd-c12a-4fac-9d4a-a594d060492a 015cdab99527ec9f3709874899c732e9 {"aliquot_tag": "ALQ_31a6a563", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.S95_R1.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R1_001.fastq.gz 4981876854 FASTQ S95_R1 submitted_unaligned CPTAC3 1327fe93-4b6d-4284-87f2-77eef733ced2 bbc6ac2668246ea33b021cba98e366d6 {"aliquot_tag": "ALQ_2cf91bb2", "sample": "S95", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.S95_R2.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R2_001.fastq.gz 5155550012 FASTQ S95_R2 submitted_unaligned CPTAC3 0335ed15-cc78-4232-806e-3d87e8089054 5a31bbfdbdb6c8a2edd9175f38242d4c {"aliquot_tag": "ALQ_2cf91bb2", "sample": "S95", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.transcriptome.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.transcriptome.gdc_realn.bam 6087641366 BAM transcriptome harmonized CPTAC3 232c9f36-8cd5-4d8f-909e-d6e1231980c7 1c26bce189635d3aca20f0ddbe105b47 {"aliquot_tag": "ALQ_31a6a563", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.RNA-Seq.transcriptome.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.transcriptome.gdc_realn.bam 3972745117 BAM transcriptome harmonized CPTAC3 16ad6a2c-149a-46ff-9819-6b86d7339f03 1da480fbb249c371142e1486fe12ba92 {"aliquot_tag": "ALQ_2cf91bb2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.WGS.N C3N-02636 UCEC WGS blood_normal CPT0182200002 CPT0182200002.WholeGenome.RP-1303.bam 64785521804 BAM submitted_aligned CPTAC3 e0eb7713-78f8-4356-9ff9-d8b30a90b56c baa4c43093a2b21961754fa465da31d2 {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02636.WGS.N.hg38 C3N-02636 UCEC WGS blood_normal CPT0182200002 a719c0b5-a7fe-43fb-9701-a4ce7dc1e7c9_wgs_gdc_realn.bam 93196010994 BAM harmonized CPTAC3 1aa1192d-e409-49fc-b05c-043968506b95 f3c6357dc42a10cc3a88bec70111e7d6 {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02636.WGS.T C3N-02636 UCEC WGS tumor CPT0182150006 CPT0182150006.WholeGenome.RP-1303.bam 67507754105 BAM submitted_aligned CPTAC3 2df91048-9845-488a-87cd-b29034a67de1 cd22dfe15adbb657d4ce94acff0b5efe {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.WGS.T.hg38 C3N-02636 UCEC WGS tumor CPT0182150006 c534c4e3-a3c8-4afd-bfc7-0dbebc2518f7_wgs_gdc_realn.bam 99857193823 BAM harmonized CPTAC3 1abbf6b2-2c6a-4aa2-a150-e2841a3c2a46 440c58f34db8ecc98b2f2b8c6a359b28 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.WXS.N C3N-02636 UCEC WXS blood_normal CPT0182200002 CPT0182200002.WholeExome.RP-1303.bam 21571065274 BAM submitted_aligned CPTAC3 76fd50f1-609c-459f-abae-0a5851223eff d8011752a2bbfdc7215f424257494209 {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02636.WXS.N.hg38 C3N-02636 UCEC WXS blood_normal CPT0182200002 a719c0b5-a7fe-43fb-9701-a4ce7dc1e7c9_wxs_gdc_realn.bam 29653321246 BAM harmonized CPTAC3 2561b0d4-e5fd-42bf-b8bb-9b2377bbc5c1 3043c3e3d273905227fb87c7b3dced8a {"aliquot_tag": "ALQ_e8008135", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02636.WXS.T C3N-02636 UCEC WXS tumor CPT0182150006 CPT0182150006.WholeExome.RP-1303.bam 26059072765 BAM submitted_aligned CPTAC3 448fc7a5-015b-4a4d-98b1-9220bc2d4e4c 9120e3d041230374096dcfc90e8489d0 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02636.WXS.T.hg38 C3N-02636 UCEC WXS tumor CPT0182150006 c534c4e3-a3c8-4afd-bfc7-0dbebc2518f7_wxs_gdc_realn.bam 35407185207 BAM harmonized CPTAC3 88843a3e-5fc5-4c0c-b2e9-db56883fe97b 57ddcb561cb10f1671bf072bb9066f71 {"aliquot_tag": "ALQ_a119b8f2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.MethArray.Green.T C3N-02637 UCEC Methylation_Array tumor CPT0182210007 203561450006_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 521e3546-59dc-4ac4-8ead-89099a2382c5 51d753f0aa704e7768fe4a3ec5955512 {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.MethArray.Red.T C3N-02637 UCEC Methylation_Array tumor CPT0182210007 203561450006_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 4b0241d9-1057-4a16-8adb-e54a2f742583 f2d38b6bd5a7b56be469f8b78e4f803f {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.miRNA-Seq.S26_L004_R1.T C3N-02637 UCEC miRNA-Seq tumor CPT0182210010 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGAGC_S26_L004_R1_001.unaln.bam 181775593 BAM S26_L004_R1 submitted_unaligned CPTAC3 b254bb3f-366f-442d-a9d8-8fb193dc04b8 f00b575c37fa144ca9167377bee5248e {"aliquot_tag": "ALQ_2275f8e8", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.miRNA-Seq.T.hg38 C3N-02637 UCEC miRNA-Seq tumor CPT0182210010 9d1ec7b1-3121-4e72-bc72-616be92891aa_mirnaseq_gdc_realn.bam 206839585 BAM harmonized CPTAC3 a27cf41d-72ab-4573-b8b6-f545df767631 d13fbf2a8aebe9b16157b3b7a797ca60 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.chimeric.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.chimeric.gdc_realn.bam 46097815 BAM chimeric harmonized CPTAC3 1d0712bb-beba-4f63-bbd5-16f39fa4c905 decf85e6c228dcf071f2c03e48ba4dd0 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.chimeric.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.chimeric.gdc_realn.bam 165394152 BAM chimeric harmonized CPTAC3 a6a49b8e-3ed2-4d23-86bc-9bf183adbff8 9e944f91a38933bcea37de4ba889d166 {"aliquot_tag": "ALQ_563948d2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.genomic.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.genomic.gdc_realn.bam 10855000992 BAM genomic harmonized CPTAC3 801a3406-df8d-4c03-a8ab-fcbb918368e8 a936ae67743c7ce414095a9ec17a9704 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.genomic.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.genomic.gdc_realn.bam 8357025610 BAM genomic harmonized CPTAC3 06e8f2ec-669e-4cd7-bd0f-1756ddb5f0a0 c6667745ab3f7b9da8800653a62e9953 {"aliquot_tag": "ALQ_563948d2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.S14_L004_R1.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R1_001.fastq.gz 5134029896 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 c180a005-af10-416f-8c52-6a1305d7e7ca acd25610cf9a65a6420f4658ecedbd5a {"aliquot_tag": "ALQ_2275f8e8", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.S14_L004_R2.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R2_001.fastq.gz 6015527868 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 37c97a88-9e12-48e9-be31-e8d260abcf7d 95cea3b5e54e0c828ca259b6d3fc11cc {"aliquot_tag": "ALQ_2275f8e8", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.S80_R1.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R1_001.fastq.gz 4387379633 FASTQ S80_R1 submitted_unaligned CPTAC3 8f1cf5e9-e989-4e84-a8e3-30a2cb6e3c41 0a3d7f75dc7b19c82611197b48b72e82 {"aliquot_tag": "ALQ_563948d2", "sample": "S80", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.S80_R2.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R2_001.fastq.gz 4489164405 FASTQ S80_R2 submitted_unaligned CPTAC3 3fe94c4e-cec6-4028-9c39-cd22e2fab33a b79eef640d65ca1f940f7a884633cad3 {"aliquot_tag": "ALQ_563948d2", "sample": "S80", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.transcriptome.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.transcriptome.gdc_realn.bam 11787607555 BAM transcriptome harmonized CPTAC3 fed1bdca-70d1-4017-a986-304258fc8cd3 9235b032493517308730133d87ca23b6 {"aliquot_tag": "ALQ_2275f8e8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.RNA-Seq.transcriptome.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.transcriptome.gdc_realn.bam 3341490790 BAM transcriptome harmonized CPTAC3 c6f4d105-a3ed-493a-ab13-8551cb70efc8 c503f5fd8c6246ee28afb7da4443f1c3 {"aliquot_tag": "ALQ_563948d2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.WGS.N C3N-02637 UCEC WGS blood_normal CPT0182270002 CPT0182270002.WholeGenome.RP-1303.bam 81310098707 BAM submitted_aligned CPTAC3 16bcb1bb-d388-4e1e-acab-f80b80669674 27f76de11abda9e4971dfacb9710d6db {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02637.WGS.N.hg38 C3N-02637 UCEC WGS blood_normal CPT0182270002 00464f90-2e5a-49b5-992a-4e03065e3c5c_wgs_gdc_realn.bam 118629098101 BAM harmonized CPTAC3 17978b7a-21a9-49df-9047-206d146e8c3f ec179c5511e26e72c85c87f72f18a8e0 {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02637.WGS.T C3N-02637 UCEC WGS tumor CPT0182210007 CPT0182210007.WholeGenome.RP-1303.bam 66739179719 BAM submitted_aligned CPTAC3 95c7eb99-871b-4c55-83c1-7c8e121176c6 739b8b17278e3481cbf605f572a8987e {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.WGS.T.hg38 C3N-02637 UCEC WGS tumor CPT0182210007 8c95a715-958e-4879-a387-badffb7e567f_wgs_gdc_realn.bam 98920260773 BAM harmonized CPTAC3 57280792-716d-4514-98b0-5734eb1e41cd 7341412ac197446e12030a0f9b830d2b {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.WXS.N C3N-02637 UCEC WXS blood_normal CPT0182270002 CPT0182270002.WholeExome.RP-1303.bam 24382548472 BAM submitted_aligned CPTAC3 97639699-7990-4642-9093-20e6b64cdc9c 4faab5c57c9e75e71eb566b497b85ccd {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02637.WXS.N.hg38 C3N-02637 UCEC WXS blood_normal CPT0182270002 00464f90-2e5a-49b5-992a-4e03065e3c5c_wxs_gdc_realn.bam 33060640278 BAM harmonized CPTAC3 85fa8da1-69e4-4f35-80aa-858cde789d16 aacc8bd3f6c960830bab62bf9e29a086 {"aliquot_tag": "ALQ_5a205d25", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02637.WXS.T C3N-02637 UCEC WXS tumor CPT0182210007 CPT0182210007.WholeExome.RP-1303.bam 20273818468 BAM submitted_aligned CPTAC3 0318e87d-ee72-447b-8605-f4142e68c5d4 5e71024a7bd05c689de7b1bf341b29b4 {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02637.WXS.T.hg38 C3N-02637 UCEC WXS tumor CPT0182210007 8c95a715-958e-4879-a387-badffb7e567f_wxs_gdc_realn.bam 27756416050 BAM harmonized CPTAC3 90717d18-d8db-415b-87e9-055daa1b632a ca524a375908e15b6b1d2412de2041f4 {"aliquot_tag": "ALQ_a50a5c0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.MethArray.Green.T C3N-02639 UCEC Methylation_Array tumor CPT0182290006 203561620043_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 79ee8412-da48-4ab3-b2fa-875f3e240f03 3d224512d9c85350cc1a7ddf80efeb2f {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.MethArray.Red.T C3N-02639 UCEC Methylation_Array tumor CPT0182290006 203561620043_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 79ee6811-3bf0-428f-afd1-fc9cba6a4591 add761660f9d3bfd206aab7d5378de11 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.miRNA-Seq.S27_L004_R1.T C3N-02639 UCEC miRNA-Seq tumor CPT0182290009 190508_UNC31-K00269_0215_BH7FYKBBXY_ATTCCT_S27_L004_R1_001.unaln.bam 195039462 BAM S27_L004_R1 submitted_unaligned CPTAC3 d3d1cb4b-de58-47b7-a564-a12d4db1bbd2 c5be598fc6316ff04475b44d1ff2c7e6 {"aliquot_tag": "ALQ_72c23acc", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.miRNA-Seq.T.hg38 C3N-02639 UCEC miRNA-Seq tumor CPT0182290009 3ca3760d-5b01-4df7-b6b5-b2bde0ee35f4_mirnaseq_gdc_realn.bam 219852798 BAM harmonized CPTAC3 3205929c-c0cd-4d24-aeba-3b2505113ec5 1ad2dd778f312f2248528b7f905d1f43 {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.chimeric.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.chimeric.gdc_realn.bam 35239576 BAM chimeric harmonized CPTAC3 145bddec-788c-4d37-954c-d7d78acec83a c1cc55cc86ab1c7b3e515fe4c134cf7c {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.chimeric.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.chimeric.gdc_realn.bam 179723394 BAM chimeric harmonized CPTAC3 dd139be1-59b3-426e-a7a7-a7b6087c7502 76eeb8459a0bfaa85f10035a555da6a0 {"aliquot_tag": "ALQ_5fedcfdc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.genomic.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.genomic.gdc_realn.bam 7960325947 BAM genomic harmonized CPTAC3 ffed25b7-79ad-4540-9da1-3cdb0462e4ab e9473953008ee4af702233f4b83e0a56 {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.genomic.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.genomic.gdc_realn.bam 8233120817 BAM genomic harmonized CPTAC3 324d8bca-0735-45c9-bb76-a734399f7edb 5f00d285f89e1880b591e2d7b12aefd9 {"aliquot_tag": "ALQ_5fedcfdc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.S13_L004_R1.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R1_001.fastq.gz 3786757673 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 644687d8-1cf5-49bc-abf8-fa6ee85b5823 fd098a3ef460f456dbb6fdd1f89f9038 {"aliquot_tag": "ALQ_72c23acc", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.S13_L004_R2.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R2_001.fastq.gz 4329848029 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 1ee14315-40b1-4f71-9ff8-3d5112b9dcb5 584c805889ec06f8a9e1865746c869a3 {"aliquot_tag": "ALQ_72c23acc", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.S72_R1.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R1_001.fastq.gz 4430176120 FASTQ S72_R1 submitted_unaligned CPTAC3 acbed472-88e6-4921-ac6c-476d0c6469b4 b57547a05ce18bf0eb682e830216bc3a {"aliquot_tag": "ALQ_5fedcfdc", "sample": "S72", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.S72_R2.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R2_001.fastq.gz 4588974531 FASTQ S72_R2 submitted_unaligned CPTAC3 dfaeda31-d434-48df-8665-aedb98453038 21d3d717586bb2004c5a7b69f20a848c {"aliquot_tag": "ALQ_5fedcfdc", "sample": "S72", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.transcriptome.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.transcriptome.gdc_realn.bam 8661165640 BAM transcriptome harmonized CPTAC3 8e52b3ba-bf37-4830-bf89-3d876ca7b3db 93c3ce9203007b11543ff6d6d8ed76ac {"aliquot_tag": "ALQ_72c23acc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.RNA-Seq.transcriptome.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.transcriptome.gdc_realn.bam 3402349083 BAM transcriptome harmonized CPTAC3 c7e6036e-017a-4442-83df-ac2791769bf2 6c9d996a8cb4805e7177779bc705b1ad {"aliquot_tag": "ALQ_5fedcfdc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.WGS.N C3N-02639 UCEC WGS blood_normal CPT0182320002 CPT0182320002.WholeGenome.RP-1303.bam 71676985544 BAM submitted_aligned CPTAC3 24bffbe1-d9c2-43b0-9c73-66d33befbb12 1ff3feae8dd58681f81a4ef7ebdd75d2 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02639.WGS.N.hg38 C3N-02639 UCEC WGS blood_normal CPT0182320002 00d8b761-e94f-4271-b616-edc69f702391_wgs_gdc_realn.bam 106034460566 BAM harmonized CPTAC3 1aa94f20-ba8b-4173-a91a-2f820a1f14c9 a88ef69f6a947f7bcea0a86e9736fc07 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02639.WGS.T C3N-02639 UCEC WGS tumor CPT0182290006 CPT0182290006.WholeGenome.RP-1303.bam 65516795986 BAM submitted_aligned CPTAC3 f7759dcb-32fc-4d91-8e1e-91f7768d2d29 6885f0980bee31a39f2f676626b41a54 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.WGS.T.hg38 C3N-02639 UCEC WGS tumor CPT0182290006 e37b922b-5835-4a04-915b-7cb5d83b1f84_wgs_gdc_realn.bam 96071456183 BAM harmonized CPTAC3 9db7e9b9-f714-46bd-928a-6e5ac3fdfe33 7738718f1a6f2faeb72d96a055e532b8 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.WXS.N C3N-02639 UCEC WXS blood_normal CPT0182320002 CPT0182320002.WholeExome.RP-1303.bam 22156279122 BAM submitted_aligned CPTAC3 fe0681ed-789d-4105-a07b-3f494f5379e2 9d7539970fb02d50c78ac21538246378 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02639.WXS.N.hg38 C3N-02639 UCEC WXS blood_normal CPT0182320002 00d8b761-e94f-4271-b616-edc69f702391_wxs_gdc_realn.bam 30300164303 BAM harmonized CPTAC3 3f187a14-4838-4129-8a4e-96dd084bdbf0 954be2acbcc23bab05cafac2858407b6 {"aliquot_tag": "ALQ_599c01f0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02639.WXS.T C3N-02639 UCEC WXS tumor CPT0182290006 CPT0182290006.WholeExome.RP-1303.bam 25946002445 BAM submitted_aligned CPTAC3 9af1a07f-3a45-4c16-835c-10e8b36c4e3b 18fa5758a7b6bcf47f6863eeb1d38da1 {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02639.WXS.T.hg38 C3N-02639 UCEC WXS tumor CPT0182290006 e37b922b-5835-4a04-915b-7cb5d83b1f84_wxs_gdc_realn.bam 36309509636 BAM harmonized CPTAC3 a735dad5-87a1-49d0-b7c3-9981ea04b032 06cb12b132188abd72b8be6f11b8209f {"aliquot_tag": "ALQ_e27d275d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02672.MethArray.Green.A C3N-02672 LUAD Methylation_Array tissue_normal CPT0187150006 203219650211_R06C01_Grn.idat 13676235 IDAT Green NA CPTAC3 9d54ad11-287e-436b-94ea-34c59dcd7c6d fa636cbd484deec436bb27de2278635b {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.MethArray.Green.T C3N-02672 LUAD Methylation_Array tumor CPT0187140006 203219650176_R08C01_Grn.idat 13676220 IDAT Green NA CPTAC3 dd67fe67-b88e-4212-8b91-fc6311101ada 11533bfffed8c19ffe42e440b3094e5b {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.MethArray.Red.A C3N-02672 LUAD Methylation_Array tissue_normal CPT0187150006 203219650211_R06C01_Red.idat 13676235 IDAT Red NA CPTAC3 e30e682a-9e91-4bf6-8eb7-30e4afab9c81 6065952b31fda06f30c50d7882f83cc8 {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.MethArray.Red.T C3N-02672 LUAD Methylation_Array tumor CPT0187140006 203219650176_R08C01_Red.idat 13676220 IDAT Red NA CPTAC3 2d911ec4-c494-407b-8168-fe986a9843d0 f69bcd2c711dac01dc783d5bf6bc7c49 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.miRNA-Seq.A.hg38 C3N-02672 LUAD miRNA-Seq tissue_normal CPT0187150009 0987a3a5-b193-4e1f-b114-0ac572128f53_mirnaseq_gdc_realn.bam 234470562 BAM harmonized CPTAC3 5a98f12e-fce7-418c-9611-011661a9b927 1e5d4165837f88953787373c76267582 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.miRNA-Seq.S10_L006_R1.A C3N-02672 LUAD miRNA-Seq tissue_normal CPT0187150009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L006_R1_001.unaln.bam 212458690 BAM S10_L006_R1 submitted_unaligned CPTAC3 38b7ce96-6c43-4ad3-8046-6d83e5826d92 e8bfe0f676214813405087e6600083ab {"aliquot_tag": "ALQ_639e8ac4", "sample": "S10", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.miRNA-Seq.S3_L008_R1.T C3N-02672 LUAD miRNA-Seq tumor CPT0187140009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L008_R1_001.unaln.bam 275488120 BAM S3_L008_R1 submitted_unaligned CPTAC3 5f9d5212-4805-43ae-b273-fe1766746f85 2f97038cdf4c17e6357e44e646370eb1 {"aliquot_tag": "ALQ_5efea374", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.miRNA-Seq.T.hg38 C3N-02672 LUAD miRNA-Seq tumor CPT0187140009 af74793e-9308-4ca9-83b6-631db6d48ce7_mirnaseq_gdc_realn.bam 298096993 BAM harmonized CPTAC3 541460b4-d9ba-427f-a102-020d2c907036 d1760b7ddd59e4017f7808c146b45806 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.RNA-Seq.chimeric.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.chimeric.gdc_realn.bam 48765280 BAM chimeric harmonized CPTAC3 dffb0c9a-9980-4671-aae9-9fd43a06b55b 09257a9a2184ee9e5cf3d24155e0c0f6 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.RNA-Seq.chimeric.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.chimeric.gdc_realn.bam 395137570 BAM chimeric harmonized CPTAC3 a0109033-6edd-4ce8-b3ef-b4e19ebd7b1e 12adab292d223327b8d609c32834a112 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.RNA-Seq.genomic.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.genomic.gdc_realn.bam 8885532899 BAM genomic harmonized CPTAC3 ddd7a635-7772-4ad2-b265-a7269245249a 1e3c9f9463002ac450412c8f407b5263 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.RNA-Seq.genomic.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.genomic.gdc_realn.bam 10591219008 BAM genomic harmonized CPTAC3 d182f9b4-6da0-4fb9-a711-dcc15b56b9a0 dcc02d7f60628bd6cfb19631c86cd886 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.RNA-Seq.S22_L006_R1.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R1_001.fastq.gz 3892141783 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 5618e0a9-eb80-4702-b4f8-4ed3320d8fed 86aa6b12c8296c05240e6578ef8af468 {"aliquot_tag": "ALQ_639e8ac4", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.RNA-Seq.S22_L006_R2.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R2_001.fastq.gz 4438018181 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 1a8a3b4c-1913-4b5e-a1a0-ecb873b83953 b860489e537c0bbb1818a5eca1294744 {"aliquot_tag": "ALQ_639e8ac4", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.RNA-Seq.S24_L007_R1.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R1_001.fastq.gz 4722651371 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 c09ebf88-ef8a-4352-9643-b3589b2d1a5b f811ba0b3e024d8738a901e5d16e4b17 {"aliquot_tag": "ALQ_5efea374", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.RNA-Seq.S24_L007_R2.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R2_001.fastq.gz 5103386418 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 ed694d4c-bbf6-4c3e-a250-ae6318f879c3 85f806661f08f8b8d06d6d8b03ebbaa6 {"aliquot_tag": "ALQ_5efea374", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.RNA-Seq.transcriptome.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.transcriptome.gdc_realn.bam 9964371206 BAM transcriptome harmonized CPTAC3 9bd59659-d680-44e4-82d4-a202b00dcd15 edc9fc767cc36f0ede844136146852b0 {"aliquot_tag": "ALQ_639e8ac4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.RNA-Seq.transcriptome.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.transcriptome.gdc_realn.bam 12660332467 BAM transcriptome harmonized CPTAC3 c2cca0f3-79be-45c0-839d-8d33e4f41528 b36d66e1fd081cad6165a0a863e31f34 {"aliquot_tag": "ALQ_5efea374", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.WGS.N C3N-02672 LUAD WGS blood_normal CPT0187310002 CPT0187310002.WholeGenome.RP-1303.bam 109521748483 BAM submitted_aligned CPTAC3 bba8c354-02df-4510-b025-c159c8370d2b 6c83446c9cc4261de940e2485408b311 {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02672.WGS.N.hg38 C3N-02672 LUAD WGS blood_normal CPT0187310002 d6f68369-a57e-4335-bea5-961283563bb4_wgs_gdc_realn.bam 157758081251 BAM harmonized CPTAC3 b420a52b-7f73-41ea-832d-33e76186d2d9 0a46e30f70ba94b3c739a1a9bf190084 {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02672.WGS.T C3N-02672 LUAD WGS tumor CPT0187140006 CPT0187140006.WholeGenome.RP-1303.bam 95190113646 BAM submitted_aligned CPTAC3 ff8348ce-ca28-40cd-be47-f4e4e6752c1a 49811c177f185b9c340a98c678847b07 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.WGS.T.hg38 C3N-02672 LUAD WGS tumor CPT0187140006 1afc8168-1ab4-4065-bed1-f6058b5c0e7e_wgs_gdc_realn.bam 133509633067 BAM harmonized CPTAC3 0ba8e418-b735-4739-86eb-f4f9b1adf016 ad4e12ecca886e2db7edba3e491df5fe {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.WXS.A C3N-02672 LUAD WXS tissue_normal CPT0187150006 CPT0187150006.WholeExome.RP-1303.bam 26557023176 BAM submitted_aligned CPTAC3 9d5f52de-5900-46c8-95d1-4a36ac24888f 6f7dc16b9595fff830655e89ac268277 {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.WXS.A.hg38 C3N-02672 LUAD WXS tissue_normal CPT0187150006 4326e8bf-a2a8-4e93-a10c-1565e387d2d8_wxs_gdc_realn.bam 36898214667 BAM harmonized CPTAC3 98e01a7d-47f4-4e4e-8623-243eeecd0427 33f95c4923b77dc69e907059b9aff50d {"aliquot_tag": "ALQ_f3219755", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02672.WXS.N C3N-02672 LUAD WXS blood_normal CPT0187310002 CPT0187310002.WholeExome.RP-1303.bam 23658000746 BAM submitted_aligned CPTAC3 0fde966d-30dd-4792-b4b8-75deaad7d22c b1cd92b5639c3bbe6141f5d88f40389d {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02672.WXS.N.hg38 C3N-02672 LUAD WXS blood_normal CPT0187310002 d6f68369-a57e-4335-bea5-961283563bb4_wxs_gdc_realn.bam 32240669095 BAM harmonized CPTAC3 254541eb-69b9-406f-affe-2491cac9ca24 6ffc28dc06dac6e24c6680f74e9b3df1 {"aliquot_tag": "ALQ_4c045487", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02672.WXS.T C3N-02672 LUAD WXS tumor CPT0187140006 CPT0187140006.WholeExome.RP-1303.bam 25187927514 BAM submitted_aligned CPTAC3 04c8473d-eb0f-44a5-a1a1-5d6a808f4a96 db422176f0aae3502a403e20a2d3cd74 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02672.WXS.T.hg38 C3N-02672 LUAD WXS tumor CPT0187140006 1afc8168-1ab4-4065-bed1-f6058b5c0e7e_wxs_gdc_realn.bam 34532277161 BAM harmonized CPTAC3 a44f0416-fb8d-4958-8233-227c63d3dfa7 6dab2ee2fb62be2d5098a575246882e0 {"aliquot_tag": "ALQ_ce41bee5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.MethArray.Green.T C3N-02675 LSCC Methylation_Array tumor CPT0187370006 203219650127_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 85271eb5-0ac9-4c87-a9d2-94b529bb0fef 0bbe1077e4aa48239a780a12fec5ffdb {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.MethArray.Red.T C3N-02675 LSCC Methylation_Array tumor CPT0187370006 203219650127_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 bd935cf9-11b5-444a-b99e-17182601bb3b 4a36115a2146bf75c63b7abfae221521 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.miRNA-Seq.A.hg38 C3N-02675 LSCC miRNA-Seq tissue_normal CPT0187380006 81df1b2e-a538-4c05-a23e-ebb65a8aaf51_mirnaseq_gdc_realn.bam 344027521 BAM harmonized CPTAC3 598971ad-dfb3-4b94-910c-4b1098b0822e 17eb6b25fe7718bb45f45f5937cc08d5 {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.miRNA-Seq.S12_L003_R1.T C3N-02675 LSCC miRNA-Seq tumor CPT0187370009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTTGTA_S12_L003_R1_001.unaln.bam 204567396 BAM S12_L003_R1 submitted_unaligned CPTAC3 df416aca-616b-41e2-b9f0-943a498b6f65 e87c2b5fa3f74e4a115b812f4847c61c {"aliquot_tag": "ALQ_549678af", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.miRNA-Seq.S43_L004_R1.A C3N-02675 LSCC miRNA-Seq tissue_normal CPT0187380006 181219_UNC31-K00269_0173_BHYGJJBBXX_TATAAT_S43_L004_R1_001.unaln.bam 310591695 BAM S43_L004_R1 submitted_unaligned CPTAC3 fcd2631a-f73c-49f7-a4a4-282342744626 f4abd06e4be86c1e5736a9abcae669da {"aliquot_tag": "ALQ_4679f2ef", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.miRNA-Seq.T.hg38 C3N-02675 LSCC miRNA-Seq tumor CPT0187370009 5076f611-0e52-4b94-8ce6-6d7e9c6aa7c7_mirnaseq_gdc_realn.bam 222249210 BAM harmonized CPTAC3 6fae347b-c0d0-4ef3-bd85-0483c43e3dbc a70a2689104a6c15704ea862ed104cb5 {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.RNA-Seq.chimeric.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.chimeric.gdc_realn.bam 186708894 BAM chimeric harmonized CPTAC3 e86e4191-9226-4cbe-b02b-3367c9aeb4af 8042983713d5acc699668ef7e75145ab {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.RNA-Seq.chimeric.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.chimeric.gdc_realn.bam 218309995 BAM chimeric harmonized CPTAC3 4558b346-073b-4970-b508-3d9393e42073 aab5ea7f5739419404b730f3f15dde03 {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.RNA-Seq.genomic.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.genomic.gdc_realn.bam 6608246091 BAM genomic harmonized CPTAC3 2cddb8bf-97f2-4842-8833-cf524a875572 ab8ab4d378319c0dd51dcd0ef4c1e0bc {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.RNA-Seq.genomic.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.genomic.gdc_realn.bam 8426223460 BAM genomic harmonized CPTAC3 0f85343c-74dd-4f74-84dc-604e6333c67d 0da3d4e118fe755dbe24d223db6155ef {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.RNA-Seq.S10_L003_R1.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 3957255137 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 2a2faead-8ea1-410b-ad2d-ed3164511bbd 5b62708367f294edd2102ac4a45e69e2 {"aliquot_tag": "ALQ_549678af", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.RNA-Seq.S10_L003_R2.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4263034307 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 3d304ca4-c27b-4541-aabc-37e79b91b03e b9bcab6f669ab92b699dc35cc08d2976 {"aliquot_tag": "ALQ_549678af", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.RNA-Seq.S24_L007_R1.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R1_001.fastq.gz 2926622604 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 b20bef80-016d-49f1-8eea-e5e09bf6d499 93c629f94a04dbc66631e726efe3011c {"aliquot_tag": "ALQ_4679f2ef", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.RNA-Seq.S24_L007_R2.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R2_001.fastq.gz 3082829787 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 9e8fed1d-63b1-434e-b294-03684885c147 463d5faea493a7c47fee06cf85332779 {"aliquot_tag": "ALQ_4679f2ef", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.RNA-Seq.transcriptome.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.transcriptome.gdc_realn.bam 8060060193 BAM transcriptome harmonized CPTAC3 bf0192fc-e4b6-4aaf-927f-d7aafe584648 8435b44a5c33483e27a773ed70d28e02 {"aliquot_tag": "ALQ_4679f2ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.RNA-Seq.transcriptome.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.transcriptome.gdc_realn.bam 9517931343 BAM transcriptome harmonized CPTAC3 e736904c-d12d-41ec-a1ac-5b557379e82b bec24851295639127c1ca2786430afec {"aliquot_tag": "ALQ_549678af", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.WGS.A C3N-02675 LSCC WGS tissue_normal CPT0187380009 CPT0187380009.WholeGenome.RP-1303.bam 57386274745 BAM submitted_aligned CPTAC3 921b9a10-c339-4857-9f82-f63862504e41 2d5e701e0f86396c04fe3c00cad16a98 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.WGS.A.hg38 C3N-02675 LSCC WGS tissue_normal CPT0187380009 abe3dff6-cc15-4ea2-ba06-a1ae395fc746_wgs_gdc_realn.bam 83983330902 BAM harmonized CPTAC3 92e48373-e903-4089-93a1-5a80b2478351 fa3221d54bffc0a80a3500c7b9ac2522 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.WGS.N C3N-02675 LSCC WGS blood_normal CPT0187410002 CPT0187410002.WholeGenome.RP-1303.bam 66726887384 BAM submitted_aligned CPTAC3 c9d55747-85ca-49da-b5f0-d8ad7da072c2 80f9f9bc2b047cb1b98947bc65956ee9 {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02675.WGS.N.hg38 C3N-02675 LSCC WGS blood_normal CPT0187410002 fce61b54-8a30-48b3-ba10-2be185ce46c3_wgs_gdc_realn.bam 97745091869 BAM harmonized CPTAC3 46649ff8-5eef-461d-be8e-cb0e0b8ee733 2adaf6745a1c29c9f39c07852741e92c {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02675.WGS.T C3N-02675 LSCC WGS tumor CPT0187370006 CPT0187370006.WholeGenome.RP-1303.bam 61078523424 BAM submitted_aligned CPTAC3 24c0e2f9-7c10-4091-8108-5980e3503e26 a2fe3ae095da92fb7109204e9076be6f {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.WGS.T.hg38 C3N-02675 LSCC WGS tumor CPT0187370006 710d992c-4b0c-4c62-bd56-075b0b8ccd48_wgs_gdc_realn.bam 88814395582 BAM harmonized CPTAC3 fba389cc-6cd7-46e7-9329-36d4a2220191 bfff402a4c64dd539656f03bb4ad7c10 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.WXS.A C3N-02675 LSCC WXS tissue_normal CPT0187380009 CPT0187380009.WholeExome.RP-1303.bam 40311159862 BAM submitted_aligned CPTAC3 ea151d43-9680-40cc-98a8-d5f9c8ed0ed0 75cfe3a2cd8a53a8aa30438f716cfd90 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.WXS.A.hg38 C3N-02675 LSCC WXS tissue_normal CPT0187380009 abe3dff6-cc15-4ea2-ba06-a1ae395fc746_wxs_gdc_realn.bam 56897140681 BAM harmonized CPTAC3 ec5eb501-da03-48f0-88e5-e4103ba62739 11466e1c1cd8d35d650b6f4944db7538 {"aliquot_tag": "ALQ_d6c6ef7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02675.WXS.N C3N-02675 LSCC WXS blood_normal CPT0187410002 CPT0187410002.WholeExome.RP-1303.bam 19538489726 BAM submitted_aligned CPTAC3 4a90c87b-adeb-48a0-bb18-ddaaf0d2170c a0db92fa801a5756d6f46c71da8c6a91 {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02675.WXS.N.hg38 C3N-02675 LSCC WXS blood_normal CPT0187410002 fce61b54-8a30-48b3-ba10-2be185ce46c3_wxs_gdc_realn.bam 26873956021 BAM harmonized CPTAC3 589bf1b6-fabf-403b-9026-85a37176cfba 5f5b380eb0a7b22aef814ba80e93ba40 {"aliquot_tag": "ALQ_5101643f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02675.WXS.T C3N-02675 LSCC WXS tumor CPT0187370006 CPT0187370006.WholeExome.RP-1303.bam 19226270900 BAM submitted_aligned CPTAC3 8a4a34a6-9682-448e-b2b3-f36209e64e09 5e2ca96631371072f7b7430ef9aeb311 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02675.WXS.T.hg38 C3N-02675 LSCC WXS tumor CPT0187370006 710d992c-4b0c-4c62-bd56-075b0b8ccd48_wxs_gdc_realn.bam 27114621409 BAM harmonized CPTAC3 973de55c-7077-4f7d-883b-079c2b9da4f1 a2afd291d6bad4c6db5184baaa21e0c4 {"aliquot_tag": "ALQ_c429653e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02678.MethArray.Green.T C3N-02678 UCEC Methylation_Array tumor CPT0182340007 203561620072_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 381b6282-aa4d-4b5b-8a0e-a37d1a26d2fc ad89bc29422c1a3b598c6a111654552d {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.MethArray.Red.T C3N-02678 UCEC Methylation_Array tumor CPT0182340007 203561620072_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e7017913-ae91-4d3b-9de2-9b2ed83e9b03 94d0ed7ee1104a787ded20df2689e73b {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.miRNA-Seq.S14_L001_R1.T C3N-02678 UCEC miRNA-Seq tumor CPT0182340010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTTCC_S14_L001_R1_001.unaln.bam 301924540 BAM S14_L001_R1 submitted_unaligned CPTAC3 cf1b1095-6b47-43e7-a659-7d2f09ae03f8 db27d1a9d55d92796de8312870f32fa6 {"aliquot_tag": "ALQ_21c9a43d", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.miRNA-Seq.T.hg38 C3N-02678 UCEC miRNA-Seq tumor CPT0182340010 e913f0a9-d054-42b1-99ee-001cfdf1e317_mirnaseq_gdc_realn.bam 345208365 BAM harmonized CPTAC3 8c53ab57-068f-4f58-b3be-d60e532889d6 93ce5d07d8cd1e925c90ac2cb4858f1a {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.chimeric.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.chimeric.gdc_realn.bam 32215785 BAM chimeric harmonized CPTAC3 93ea17f4-5109-4dc8-806b-cac6dcbe9c66 2b988d94c8186f9d7d4c3471e53c8e31 {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.chimeric.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.chimeric.gdc_realn.bam 190228109 BAM chimeric harmonized CPTAC3 d5b75ac4-de33-45c0-8943-f78ac5844c28 adb291af0820587a4dce602aac971645 {"aliquot_tag": "ALQ_52fdadad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.genomic.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.genomic.gdc_realn.bam 8105950781 BAM genomic harmonized CPTAC3 0795b2dd-4ad8-4640-9eac-adfe603abbc0 337d5b7ed5b7782d00d1a76204076030 {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.genomic.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.genomic.gdc_realn.bam 8625792035 BAM genomic harmonized CPTAC3 9fb93b50-880b-4378-8f22-1ca65736258b baa0735da7eb45895ea1bfd100d0fc71 {"aliquot_tag": "ALQ_52fdadad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.S31_L005_R1.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R1_001.fastq.gz 3785854007 FASTQ S31_L005_R1 submitted_unaligned CPTAC3 c83686a4-c3bf-4237-ad36-cc4e3a437299 58d643202a969b2e5af01c3b138e8a21 {"aliquot_tag": "ALQ_21c9a43d", "sample": "S31", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.S31_L005_R2.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R2_001.fastq.gz 4391740200 FASTQ S31_L005_R2 submitted_unaligned CPTAC3 12b57388-d7fd-4fa5-962f-4c95af38f9a8 199bff4437aea3967494e5b9ff0cd7ac {"aliquot_tag": "ALQ_21c9a43d", "sample": "S31", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.S75_R1.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R1_001.fastq.gz 6626776231 FASTQ S75_R1 submitted_unaligned CPTAC3 421abc67-59ec-46b7-b13a-9bd718ba7208 d7ae8e1757c7fb230e3e401cf10f79fa {"aliquot_tag": "ALQ_52fdadad", "sample": "S75", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.S75_R2.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R2_001.fastq.gz 6912505116 FASTQ S75_R2 submitted_unaligned CPTAC3 729d183b-67fc-4822-b28f-cdc7728992cd 5cddbe63cadf9f95c2e4d5dabf7f8341 {"aliquot_tag": "ALQ_52fdadad", "sample": "S75", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.transcriptome.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.transcriptome.gdc_realn.bam 10555973338 BAM transcriptome harmonized CPTAC3 4f0581ce-ce00-40d6-85ec-b2dfc5b5417e 927a102f3cb183cad94486d83ece7ed9 {"aliquot_tag": "ALQ_21c9a43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.RNA-Seq.transcriptome.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.transcriptome.gdc_realn.bam 4361804382 BAM transcriptome harmonized CPTAC3 f6f0ce6c-c2a4-437f-9346-fb887b199bc0 1a0663f41b4bda7704fa9daa89cd2952 {"aliquot_tag": "ALQ_52fdadad", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.WGS.N C3N-02678 UCEC WGS blood_normal CPT0182370002 CPT0182370002.WholeGenome.RP-1303.bam 75363014340 BAM submitted_aligned CPTAC3 d047befe-df1d-434d-9f04-79ae1f3cf426 2118b043e6a46bdc04c5464f1afdf63c {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02678.WGS.N.hg38 C3N-02678 UCEC WGS blood_normal CPT0182370002 e63fe275-2c51-449e-805b-1a2447ccb101_wgs_gdc_realn.bam 109977924868 BAM harmonized CPTAC3 c5e83454-c52b-4426-a985-fe9ffdaa710f 87dff55056753581653694ab2e5d52ec {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02678.WGS.T C3N-02678 UCEC WGS tumor CPT0182340007 CPT0182340007.WholeGenome.RP-1303.bam 80763839420 BAM submitted_aligned CPTAC3 b1f00382-d6bf-4586-baf5-b931bb7a6800 4212f8fde142cf4be7b4a8ea6a16dc45 {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.WGS.T.hg38 C3N-02678 UCEC WGS tumor CPT0182340007 9807dd59-273e-4b26-ba72-f0ecc39ae673_wgs_gdc_realn.bam 119256411965 BAM harmonized CPTAC3 6d148de8-640e-4192-872b-cb71225ced22 342c40e1986d62294017c77c39b433a4 {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.WXS.N C3N-02678 UCEC WXS blood_normal CPT0182370002 CPT0182370002.WholeExome.RP-1303.bam 27706042598 BAM submitted_aligned CPTAC3 39fd72e1-196f-40bc-839d-8bbad19d6a03 8dc69bab210abedc18ae2338b7713ac4 {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02678.WXS.N.hg38 C3N-02678 UCEC WXS blood_normal CPT0182370002 e63fe275-2c51-449e-805b-1a2447ccb101_wxs_gdc_realn.bam 37542203716 BAM harmonized CPTAC3 ca16e0cd-da52-46c8-aa48-bf1c28ce3e22 23981cf98edb4c92d759f2c1802c2b71 {"aliquot_tag": "ALQ_917c8e80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02678.WXS.T C3N-02678 UCEC WXS tumor CPT0182340007 CPT0182340007.WholeExome.RP-1303.bam 21924948875 BAM submitted_aligned CPTAC3 ad8b9663-2ae1-4181-83eb-da9abad8cd99 5853226daf246270ced334d789f980ca {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02678.WXS.T.hg38 C3N-02678 UCEC WXS tumor CPT0182340007 9807dd59-273e-4b26-ba72-f0ecc39ae673_wxs_gdc_realn.bam 30860639161 BAM harmonized CPTAC3 d48f290b-3249-4db0-a7e3-de4b1c3c0406 ba43d82f72c7666c31a73bdbf56263fc {"aliquot_tag": "ALQ_a6b600df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.MethArray.Green.T C3N-02681 GBM Methylation_Array tumor CPT0224870006 204367400148_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 385674e5-9ff5-4f44-8936-323d4e7ddc75 57f120eff9f1bfeacbfbd3b0d21fc867 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.MethArray.Red.T C3N-02681 GBM Methylation_Array tumor CPT0224870006 204367400148_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 f6fb6624-00e6-41ab-b0b6-25d73f02a117 a5d02b9739760b18c4bb9e37cf78e324 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.miRNA-Seq.S20_L001_R1.T C3N-02681 GBM miRNA-Seq tumor CPT0224870009 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L001_R1_001.unaln.bam 404126709 BAM S20_L001_R1 submitted_unaligned CPTAC3 d3101058-1ae1-4bd5-937c-aa8cb895c8c0 e30def0150579c5234737ce1c34c3c78 {"aliquot_tag": "ALQ_a7f4b2fc", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.miRNA-Seq.T.hg38 C3N-02681 GBM miRNA-Seq tumor CPT0224870009 a1b4b1da-1b16-44a1-89f4-64ea9218c326_mirnaseq_gdc_realn.bam 440358841 BAM harmonized CPTAC3 b32908c3-4bcf-47cb-9b68-002c51ea2866 63e07ca0e1b1a7544a004b8a61a3d277 {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.RNA-Seq.chimeric.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.chimeric.gdc_realn.bam 33161553 BAM chimeric harmonized CPTAC3 206459a2-b872-4d59-922b-1b76e68fb060 2c49e3c1a202796bfad9882fb6ae4608 {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.RNA-Seq.genomic.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.genomic.gdc_realn.bam 7421482980 BAM genomic harmonized CPTAC3 3fcbdde0-f21d-46fc-aff7-368f2847e3ab 79ce3733b174ea46cee84da925c45306 {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.RNA-Seq.S10_L003_R1.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 a9a4c580-e93e-4331-bcd2-26bd9f24d024 2ae78b19896ae2a06ee16e04f7e27cfc {"aliquot_tag": "ALQ_a7f4b2fc", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.RNA-Seq.S10_L003_R2.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 17f81101-60cd-4f3f-905c-776206e75ed1 a5fd48e9b39ba8a15d982a7792fd8a7f {"aliquot_tag": "ALQ_a7f4b2fc", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.RNA-Seq.transcriptome.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.transcriptome.gdc_realn.bam 7721749236 BAM transcriptome harmonized CPTAC3 6a70da7e-c9c4-4d04-af70-3d09addfb6c5 782e612ed934232cbc3a0e7a0aba1f6f {"aliquot_tag": "ALQ_a7f4b2fc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.WGS.N C3N-02681 GBM WGS blood_normal CPT0224890002 CPT0224890002.WholeGenome.RP-2158.bam 29513597556 BAM submitted_aligned CPTAC3 84be52db-65d0-4a40-9707-a7a31938a2b4 93f2092af659e9b5eb036575744cb5c2 {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02681.WGS.N.hg38 C3N-02681 GBM WGS blood_normal CPT0224890002 64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wgs_gdc_realn.bam 87927682035 BAM harmonized CPTAC3 fc1f6717-d9aa-4711-a859-63dfbebbb225 3d99d1e398ddca1e01cdff813d131f15 {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02681.WGS.T C3N-02681 GBM WGS tumor CPT0224870006 CPT0224870006.WholeGenome.RP-2158.bam 21588349176 BAM submitted_aligned CPTAC3 d6e95ce9-5c17-42a4-ad5f-7fd62229b2f8 ab991cc28e94d545e479809fe357300d {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.WGS.T.hg38 C3N-02681 GBM WGS tumor CPT0224870006 f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wgs_gdc_realn.bam 62459496300 BAM harmonized CPTAC3 fd143d44-a8c3-4f15-93c8-df50ef08f406 886b39eb57570f802e1c927f3da5047c {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.WXS.N C3N-02681 GBM WXS blood_normal CPT0224890002 CPT0224890002.WholeExome.RP-1303.bam 22672044861 BAM submitted_aligned CPTAC3 9e3323b4-5822-4ae6-b67d-5fd328904d51 4d7facbd49077c4d3c279f4ed29bea87 {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02681.WXS.N.hg38 C3N-02681 GBM WXS blood_normal CPT0224890002 64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wxs_gdc_realn.bam 30409997212 BAM harmonized CPTAC3 1dee4a31-a455-4094-9bca-8c5728420d08 e32aabf8695dd1d03f1091c373fb1a1a {"aliquot_tag": "ALQ_8f16d515", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02681.WXS.T C3N-02681 GBM WXS tumor CPT0224870006 CPT0224870006.WholeExome.RP-1303.bam 21755322913 BAM submitted_aligned CPTAC3 21f33ee6-8a02-4c89-ad5f-1236f2b1b8d0 6cd94102ff26545973129ea9c47c3909 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02681.WXS.T.hg38 C3N-02681 GBM WXS tumor CPT0224870006 f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wxs_gdc_realn.bam 30168751979 BAM harmonized CPTAC3 6ea35233-7d7a-4a6a-ad94-c9be14124207 571ae6b770905c1a7180af19243d2612 {"aliquot_tag": "ALQ_374baf6d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.MethArray.Green.T C3N-02682 GBM Methylation_Array tumor CPT0224900006 204930630082_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 57ff562b-2adb-4f56-b620-76858dc67487 9dcc0a89222a7a06976906022fca336a {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.MethArray.Red.T C3N-02682 GBM Methylation_Array tumor CPT0224900006 204930630082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 ec061ee7-dae9-48d1-b7e8-9540a2592361 a7a62061fba9fdaf752d501897a2947c {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.miRNA-Seq.S43_L002_R1.T C3N-02682 GBM miRNA-Seq tumor CPT0224900009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 222592560 BAM S43_L002_R1 submitted_unaligned CPTAC3 9d01dc24-eb15-4c28-bba9-f04775a98168 c8c95be2aeaa145208f2c8fcabbac0e6 {"aliquot_tag": "ALQ_de88bd49", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.miRNA-Seq.T.hg38 C3N-02682 GBM miRNA-Seq tumor CPT0224900009 034ae2ee-d3f8-4256-83c1-089148361759_mirnaseq_gdc_realn.bam 252734628 BAM harmonized CPTAC3 0023dbf5-2b24-4578-9392-180ffe74a898 ed455efe281b1dc88e85725f4bae72e3 {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.RNA-Seq.chimeric.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.chimeric.gdc_realn.bam 37961281 BAM chimeric harmonized CPTAC3 410039f2-fbff-48a0-a02e-c80dc7418a93 3eaa26db8fc198798d9c75e6e22699ac {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.RNA-Seq.genomic.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.genomic.gdc_realn.bam 8912091018 BAM genomic harmonized CPTAC3 3a33af12-883d-434b-b09e-1271e6f5cf1f 6099a23998d9c03570a43cb479b4f040 {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.RNA-Seq.S11_L003_R1.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 bdabb589-3cd2-4b0d-9710-b951fc336806 78f770e27956e9ee283579768c74539a {"aliquot_tag": "ALQ_de88bd49", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.RNA-Seq.S11_L003_R2.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 c36b01fb-a764-4899-8eaa-7df412ad8c7b c0535dc8e09ca2e6d179e20623f904c7 {"aliquot_tag": "ALQ_de88bd49", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.RNA-Seq.transcriptome.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.transcriptome.gdc_realn.bam 9478769771 BAM transcriptome harmonized CPTAC3 5908f4c4-c5c4-4f8c-8b07-329ccd08b034 16c0eafa4be5ae37c9eeafba6cbeda1e {"aliquot_tag": "ALQ_de88bd49", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.WGS.N C3N-02682 GBM WGS blood_normal CPT0224920002 CPT0224920002.WholeGenome.RP-2158.bam 24539748739 BAM submitted_aligned CPTAC3 f0ea8630-6e1c-4904-98a2-7c2772da1ed7 d6ef5422ce8df34f3748fb80f26ff7f2 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02682.WGS.N.hg38 C3N-02682 GBM WGS blood_normal CPT0224920002 5854cf9a-665a-48c0-a765-43727b62ae6d_wgs_gdc_realn.bam 73004266622 BAM harmonized CPTAC3 2771f873-7104-4a2f-a186-ee4634ea8b5d 44a5e33f364c39b44562c6f1f5b11f09 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02682.WGS.T C3N-02682 GBM WGS tumor CPT0224900006 CPT0224900006.WholeGenome.RP-2158.bam 27140589506 BAM submitted_aligned CPTAC3 d07b3f98-fbba-4f88-8cd4-05b6b60fa2f4 6a97998c8531c2a5ed5a647cf81968ae {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.WGS.T.hg38 C3N-02682 GBM WGS tumor CPT0224900006 a96f6a16-6c6d-446b-8545-571072fd312a_wgs_gdc_realn.bam 79473733003 BAM harmonized CPTAC3 b805c3d4-0636-483f-ab8b-747e130cafff 7eba790a20b43755d7d3826c23645ebd {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.WXS.N C3N-02682 GBM WXS blood_normal CPT0224920002 CPT0224920002.WholeExome.RP-1303.bam 32308755616 BAM submitted_aligned CPTAC3 a49f2a7e-630a-4dc6-b2d6-b1ae75d1e82b 4d33649ec2d27be1d079e68fdf3f11a0 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02682.WXS.N.hg38 C3N-02682 GBM WXS blood_normal CPT0224920002 5854cf9a-665a-48c0-a765-43727b62ae6d_wxs_gdc_realn.bam 44410389015 BAM harmonized CPTAC3 8a53e18d-9895-42a2-9ec6-31f7bb5fcb77 549d917d173ca3fab57e760e49d03350 {"aliquot_tag": "ALQ_339a37a1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02682.WXS.T C3N-02682 GBM WXS tumor CPT0224900006 CPT0224900006.WholeExome.RP-1303.bam 31079844576 BAM submitted_aligned CPTAC3 685fc795-d8a6-44db-9946-6abf67a1ea35 72d889c25439e208ad03686616c09de8 {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02682.WXS.T.hg38 C3N-02682 GBM WXS tumor CPT0224900006 a96f6a16-6c6d-446b-8545-571072fd312a_wxs_gdc_realn.bam 41646001362 BAM harmonized CPTAC3 307e94af-7463-4cec-a9e3-8f89ec1713a2 996102ecd75e624fdba62ab47d701625 {"aliquot_tag": "ALQ_4e37a0d8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.MethArray.Green.T C3N-02683 GBM Methylation_Array tumor CPT0224930006 204372030079_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0a9b2e20-870b-4a66-ab2f-051e2d554f25 529532979907946bd930507c78f56c38 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.MethArray.Red.T C3N-02683 GBM Methylation_Array tumor CPT0224930006 204372030079_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 5eedf5aa-57e1-4eda-adfd-8dd190a63470 60cc441b70054e307b51500d9dc95f13 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.miRNA-Seq.S26_L002_R1.T C3N-02683 GBM miRNA-Seq tumor CPT0224930012 200403_UNC31-K00269_0274_AHCF7GBBXY_CGATGT_S26_L002_R1_001.unaln.bam 268795788 BAM S26_L002_R1 submitted_unaligned CPTAC3 9f8c1f79-ac2c-4c9d-91ed-e1300d7c4b0d 179656880a8390577376203eaa89970f {"aliquot_tag": "ALQ_17e12f50", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.miRNA-Seq.T.hg38 C3N-02683 GBM miRNA-Seq tumor CPT0224930012 2cbef5f3-3bc6-474b-942b-4d9928326d28_mirnaseq_gdc_realn.bam 298296964 BAM harmonized CPTAC3 86cb8c5b-f827-4c92-a8ab-fef3d90b8eb3 7ca60f32150713f61f82dbd3444c7e63 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.RNA-Seq.chimeric.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.chimeric.gdc_realn.bam 305392204 BAM chimeric harmonized CPTAC3 f14b214a-5ff1-46a7-883a-c11118856160 f1729b289ab1132542297075bd7dd583 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.RNA-Seq.genomic.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.genomic.gdc_realn.bam 9611745269 BAM genomic harmonized CPTAC3 59c4ddf5-bfae-4be7-a981-43a7a322a121 de551856b7b0612855567d6b3e140108 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.RNA-Seq.S6_L007_R1.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ S6_L007_R1 submitted_unaligned CPTAC3 f88b71c6-807d-45d8-bb45-d6f1adb722e4 1c21125d789e0e7af18a6e61b0ddcdc4 {"aliquot_tag": "ALQ_17e12f50", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.RNA-Seq.S6_L007_R2.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ S6_L007_R2 submitted_unaligned CPTAC3 86f73dc2-f0b2-4857-9873-09673863a96a 82e5a3f4dec70d062ff644403fcbbb17 {"aliquot_tag": "ALQ_17e12f50", "sample": "S6", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.RNA-Seq.transcriptome.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.transcriptome.gdc_realn.bam 9299363306 BAM transcriptome harmonized CPTAC3 3ca3cb9e-adc1-4aee-9de6-b1a6ac357610 7868efe984b36fe6bece09fd8753aa46 {"aliquot_tag": "ALQ_17e12f50", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.WGS.N C3N-02683 GBM WGS blood_normal CPT0224950002 CPT0224950002.WholeGenome.RP-2158.bam 22007412977 BAM submitted_aligned CPTAC3 2d2be077-64ee-4be0-934e-ffa2f0c44fb0 d1b0a28f94567a0db7f69734383b86a3 {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02683.WGS.N.hg38 C3N-02683 GBM WGS blood_normal CPT0224950002 63e86eb1-34a0-4930-ab71-1e80bca277ed_wgs_gdc_realn.bam 67714893079 BAM harmonized CPTAC3 61819705-e22c-4d38-9cac-3d53f1d640fa 7f668186c3bb0669ea0983536e887320 {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02683.WGS.T C3N-02683 GBM WGS tumor CPT0224930006 CPT0224930006.WholeGenome.RP-2158.bam 20774991918 BAM submitted_aligned CPTAC3 6eced862-2a89-414c-bc4b-7c0d197bbe49 fec26ca396989f5f58b0a01727584459 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.WGS.T.hg38 C3N-02683 GBM WGS tumor CPT0224930006 17fb3ecc-d825-4e43-a854-3494772f2488_wgs_gdc_realn.bam 60609807639 BAM harmonized CPTAC3 126f97d8-c3e5-4676-87e4-f0e71791a784 3e1782efc49d7d08e618a62646c5dd60 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.WXS.N C3N-02683 GBM WXS blood_normal CPT0224950002 CPT0224950002.WholeExome.RP-1303.bam 17787837151 BAM submitted_aligned CPTAC3 592cfbb3-28f9-49a9-832f-b583e604e6c6 2476b0e86b220678fbcc721bce06a5db {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal CPT0224950002 63e86eb1-34a0-4930-ab71-1e80bca277ed_wxs_gdc_realn.bam 24195719764 BAM harmonized CPTAC3 d0263ae2-aa97-470b-9b51-bb94d28b6edc 5268af91e7c5914eb96dde24a31cd006 {"aliquot_tag": "ALQ_81baebb1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02683.WXS.T C3N-02683 GBM WXS tumor CPT0224930006 CPT0224930006.WholeExome.RP-1303.bam 19826009056 BAM submitted_aligned CPTAC3 361c9812-014e-44d2-9ecd-453e0f9f99f8 5efb2348fd07a3c61b3aaa6aacb65e68 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor CPT0224930006 17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM harmonized CPTAC3 69b5d037-e728-49dc-8fa6-ff955e5ace97 c7e2ce1b86a853afe0a4e01d2ec41a65 {"aliquot_tag": "ALQ_997da08", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02684.miRNA-Seq.A.hg38 C3N-02684 GBM miRNA-Seq tissue_normal CPT0404570010 093cd092-2e78-41eb-a1c4-9dcfb64cbf72_mirnaseq_gdc_realn.bam 319653613 BAM harmonized CPTAC3 80235cba-341b-47d5-9716-cfb09730b6a2 16c607235d0ae0ffe3ce1f3a2f2554af {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.miRNA-Seq.S32_L005_R1.A C3N-02684 GBM miRNA-Seq tissue_normal CPT0404570010 210702_UNC32-K00270_0289_AHKJ22BBXY_CATTTT_S32_L005_R1_001.unaln.bam 289271828 BAM S32_L005_R1 submitted_unaligned CPTAC3 7c1a1eed-ec0e-4ec1-9247-bbc69e7ab201 882610cb71b88ee61570ff3b4ee9a51a {"aliquot_tag": "ALQ_4a925630", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.RNA-Seq.chimeric.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.chimeric.gdc_realn.bam 118849340 BAM chimeric harmonized CPTAC3 ac226bda-fd62-4c36-9059-731a1d562df6 181da6364d9613c57fc4198f1eb69401 {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.RNA-Seq.genomic.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.genomic.gdc_realn.bam 8285546489 BAM genomic harmonized CPTAC3 cd799b7e-354f-40ab-a95a-eb0e62225112 12ed3f21bb131c63f5ee325699f02e84 {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.RNA-Seq.S18_L005_R1.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 e9d5ecfa-3887-4f7c-876b-e7addf0fa54d bd1589694b214bda8f6e3da954073675 {"aliquot_tag": "ALQ_4a925630", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.RNA-Seq.S18_L005_R2.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R2_001.fastq.gz 4022996013 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 7513f50c-a395-49c5-8076-da5d97a21a2d c8686b7129d6edb71be27fd13500abce {"aliquot_tag": "ALQ_4a925630", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.RNA-Seq.transcriptome.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.transcriptome.gdc_realn.bam 9836334658 BAM transcriptome harmonized CPTAC3 4f171781-04c6-4c63-af25-1c69fdebaa63 2e76d5227b0dfe69e5382ab80eca7c70 {"aliquot_tag": "ALQ_4a925630", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.WXS.A C3N-02684 GBM WXS tissue_normal CPT0404570007 CPT0404570007.WholeExome.RP-1303.bam 27582047056 BAM submitted_aligned CPTAC3 d15b182d-611b-41a1-b525-b1debc36c6e4 06fd5b6938a195b1d0113a441ea06cd6 {"aliquot_tag": "ALQ_cdedf2d2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02684.WXS.A.hg38 C3N-02684 GBM WXS tissue_normal CPT0404570007 b94f84b6-e892-44f2-96e8-2d8d01b75a83_wxs_gdc_realn.bam 38176829942 BAM harmonized CPTAC3 8b978087-6503-4c83-bad4-b870180bbe95 356c00f9cfe0194e771fc39425119390 {"aliquot_tag": "ALQ_cdedf2d2", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-02684.WXS.N C3N-02684 GBM WXS blood_normal CPT0404640002 CPT0404640002.WholeExome.RP-1303.bam 29153735919 BAM submitted_aligned CPTAC3 01198a6c-3221-44f0-97b0-2f583b4b1f54 1f29cd19bc7b3b80490d508d49707bad {"aliquot_tag": "ALQ_7cb30e23", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02684.WXS.N.hg38 C3N-02684 GBM WXS blood_normal CPT0404640002 8e74fbec-acd7-4634-a057-fb7a7fdac99d_wxs_gdc_realn.bam 40509541711 BAM harmonized CPTAC3 36ea9e25-fd16-43e8-a544-62be15bf70c5 0bc2d86b95966b5a82a1e5f457c6712f {"aliquot_tag": "ALQ_7cb30e23", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-02688.MethArray.Green.A C3N-02688 LSCC Methylation_Array tissue_normal CPT0312920006 204372030076_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a1dad805-ac26-4af1-b7ca-571ad271f815 fa6bc94b4d886d9586c275922ca69d9a {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.MethArray.Green.T C3N-02688 LSCC Methylation_Array tumor CPT0312910006 204372030127_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 161f8c43-043b-4d18-87e9-4526d98453c5 df1a94012402f599ed268eb01c6bee01 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.MethArray.Red.A C3N-02688 LSCC Methylation_Array tissue_normal CPT0312920006 204372030076_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 15b2c74b-dba2-43b6-b7e2-c578b5eddd7a 000326a874f6e98624bcf4f989dd4314 {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.MethArray.Red.T C3N-02688 LSCC Methylation_Array tumor CPT0312910006 204372030127_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 b585a793-5c65-47dc-a86c-3176ef9ee4ad 4698900170d044183f87d2a2804fd484 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.miRNA-Seq.A.hg38 C3N-02688 LSCC miRNA-Seq tissue_normal CPT0312920009 d00920ca-4e46-4bb0-aded-5cf69517f27b_mirnaseq_gdc_realn.bam 250886309 BAM harmonized CPTAC3 ebae80d1-2c0b-4b88-8d5f-86c7f31cca8d 3033fc7007bb7a107c51a59fe8e525d8 {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.miRNA-Seq.S11_L008_R1.T C3N-02688 LSCC miRNA-Seq tumor CPT0312910009 200224_UNC31-K00269_0267_AHC722BBXY_GGCTAC_S11_L008_R1_001.unaln.bam 236071444 BAM S11_L008_R1 submitted_unaligned CPTAC3 235f3879-e620-4693-98e6-2730194e2016 be6a0437c6c74509e07d2ba39ea917fc {"aliquot_tag": "ALQ_19ccb263", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.miRNA-Seq.S5_L005_R1.A C3N-02688 LSCC miRNA-Seq tissue_normal CPT0312920009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATCACG_S5_L005_R1_001.unaln.bam 222260978 BAM S5_L005_R1 submitted_unaligned CPTAC3 86615d19-d945-4322-9f2e-f47e81401fe1 5a71a4279e6b7133f676e49d8c584593 {"aliquot_tag": "ALQ_5e6cc8b3", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.miRNA-Seq.T.hg38 C3N-02688 LSCC miRNA-Seq tumor CPT0312910009 caa1123b-8a05-4c0c-8a63-f29f2348ba74_mirnaseq_gdc_realn.bam 261205317 BAM harmonized CPTAC3 8846dcfd-79ea-4a17-bed3-85a2209cb2da 13bfdeb615c1f2b3ce1fbefc8e625530 {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.RNA-Seq.chimeric.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.chimeric.gdc_realn.bam 43614935 BAM chimeric harmonized CPTAC3 4472fc85-234a-43a1-b129-ae80b9f72d57 3edb63a90f03ca4f7315ee0b0d00a37b {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.RNA-Seq.chimeric.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.chimeric.gdc_realn.bam 31188718 BAM chimeric harmonized CPTAC3 5f447095-3d00-4804-bce2-1bd49171cffe e7cd74581eef61e54cccbadc30993cc0 {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.RNA-Seq.genomic.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.genomic.gdc_realn.bam 9982348716 BAM genomic harmonized CPTAC3 68571263-2918-4bb6-9ebf-3e2cf212d696 899ac9458f6b90c33c22c47391d413ba {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.RNA-Seq.genomic.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.genomic.gdc_realn.bam 7386428404 BAM genomic harmonized CPTAC3 751a4f5c-fd7a-404f-a0bd-8e383bc2e358 ef54cb73508868fcd65874210337572f {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.RNA-Seq.S11_L003_R1.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R1_001.fastq.gz 3631020778 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 c124c4a7-51e6-488f-a793-61b93eb0e118 a2fd520856f22ad7e887edefcfd5b979 {"aliquot_tag": "ALQ_19ccb263", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.RNA-Seq.S11_L003_R2.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R2_001.fastq.gz 3918387827 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 1d7a49f1-cb96-4a37-8507-0447f00fd37f 3a8e78eab80321592656a81aa7687fd6 {"aliquot_tag": "ALQ_19ccb263", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.RNA-Seq.S1_L005_R1.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R1_001.fastq.gz 5068314421 FASTQ S1_L005_R1 submitted_unaligned CPTAC3 c7fc7a30-bc1e-4548-9c65-b57f1ccbc2f8 4698785e852794e60bbd246691f278ef {"aliquot_tag": "ALQ_5e6cc8b3", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.RNA-Seq.S1_L005_R2.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R2_001.fastq.gz 5446340967 FASTQ S1_L005_R2 submitted_unaligned CPTAC3 a753ba88-e961-4f03-ae0d-9ebc591fb1d3 e162e5125a60d6d9aa9203a83a04721a {"aliquot_tag": "ALQ_5e6cc8b3", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.RNA-Seq.transcriptome.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.transcriptome.gdc_realn.bam 12289175155 BAM transcriptome harmonized CPTAC3 052f51d1-4090-4f33-99e9-31f6c48596d6 b73440a62092ffd04819a9ff924bc44f {"aliquot_tag": "ALQ_5e6cc8b3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.RNA-Seq.transcriptome.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.transcriptome.gdc_realn.bam 10379708663 BAM transcriptome harmonized CPTAC3 87150f33-c16c-4119-b4c6-899ca9174d37 068bdc9bd0176eda5650f44c11e1bd79 {"aliquot_tag": "ALQ_19ccb263", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.WGS.N C3N-02688 LSCC WGS blood_normal CPT0312930002 CPT0312930002.WholeGenome.RP-2158.bam 24879180435 BAM submitted_aligned CPTAC3 19002fae-edee-4df2-90de-0f70b92d726d e00c75b0586af3b9e715e34583848336 {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02688.WGS.N.hg38 C3N-02688 LSCC WGS blood_normal CPT0312930002 7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wgs_gdc_realn.bam 73583032406 BAM harmonized CPTAC3 3874521a-91da-4fe6-aa99-5c5a25f74594 92d8df89072bbfe4381076b05b490fb1 {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02688.WGS.T C3N-02688 LSCC WGS tumor CPT0312910006 CPT0312910006.WholeGenome.RP-2158.bam 25085524970 BAM submitted_aligned CPTAC3 9915a0e2-3020-4e79-9fc2-ad6176c13c71 a791db082febbf86d9eb63f941ec7e1d {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.WGS.T.hg38 C3N-02688 LSCC WGS tumor CPT0312910006 841db2f4-f7e1-4d01-aba1-5f75df188097_wgs_gdc_realn.bam 70440118470 BAM harmonized CPTAC3 d3f651cf-a358-4262-bc5f-f8e85dd223ab ca0833137ccb711b6ab96585844b2afb {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.WXS.A C3N-02688 LSCC WXS tissue_normal CPT0312920006 CPT0312920006.WholeExome.RP-1303.bam 27906892479 BAM submitted_aligned CPTAC3 df121a2e-5197-4217-9bb7-ef46625c005e 9fedf0f3d44a9e68796d9e930bd703ec {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.WXS.A.hg38 C3N-02688 LSCC WXS tissue_normal CPT0312920006 ab150086-1f8c-4aca-a1c2-4a4f37c24d4e_wxs_gdc_realn.bam 38673434851 BAM harmonized CPTAC3 de9ce9d2-bd13-4c9d-a525-081ecbea3ee6 026b5404b2b53d5a454d919f8bd77d54 {"aliquot_tag": "ALQ_ced3d522", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02688.WXS.N C3N-02688 LSCC WXS blood_normal CPT0312930002 CPT0312930002.WholeExome.RP-1303.bam 28283144336 BAM submitted_aligned CPTAC3 06808e58-a880-4754-9b27-fa25f072e2df 1ff8dd6db4a102baef15adc87e0b1c1e {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02688.WXS.N.hg38 C3N-02688 LSCC WXS blood_normal CPT0312930002 7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wxs_gdc_realn.bam 38190469620 BAM harmonized CPTAC3 09900c8f-9803-4870-845f-3c3d4079d5c7 080844bb985129f7003e727fa5ad4649 {"aliquot_tag": "ALQ_f4de388b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02688.WXS.T C3N-02688 LSCC WXS tumor CPT0312910006 CPT0312910006.WholeExome.RP-1303.bam 18877226352 BAM submitted_aligned CPTAC3 b9dacedb-73c3-454d-87c3-3fde9edc21de 741ec32ebc4f90ac0ae7c21756e18bb4 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02688.WXS.T.hg38 C3N-02688 LSCC WXS tumor CPT0312910006 841db2f4-f7e1-4d01-aba1-5f75df188097_wxs_gdc_realn.bam 26615928651 BAM harmonized CPTAC3 1765197d-1865-46bc-9919-72a12b9b57ea a0b3b2e1a3bbbdec3ae1aa8b2cd01b78 {"aliquot_tag": "ALQ_8973aff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02693.MethArray.Green.T C3N-02693 HNSCC Methylation_Array tumor CPT0226130006 203273200073_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f2cf96dc-de66-4d59-b395-a40b592b0b13 6ddbba3a88671f3ff893358bb6b985b1 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.MethArray.Red.T C3N-02693 HNSCC Methylation_Array tumor CPT0226130006 203273200073_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 69b7283c-e5e0-45b4-8638-a4bb026f1153 e5ac4acf10d81b6de0ee86a1b395e823 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.miRNA-Seq.S45_L004_R1.T C3N-02693 HNSCC miRNA-Seq tumor CPT0226130009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L004_R1_001.unaln.bam 164676057 BAM S45_L004_R1 submitted_unaligned CPTAC3 28f4bbe1-0a8d-4576-9db5-0d56d055f1ac 4e3fef2fedb109e1d20e9ed4bad655ae {"aliquot_tag": "ALQ_e2e454dd", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.miRNA-Seq.T.hg38 C3N-02693 HNSCC miRNA-Seq tumor CPT0226130009 155a4a50-aa68-4e0a-8993-986a2951ebc2_mirnaseq_gdc_realn.bam 188432018 BAM harmonized CPTAC3 b5121d1e-bef0-4b13-a48c-5d2d9508ac07 2cf4aabdd1db96a0f3af8f2faf7d62f0 {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.chimeric.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.chimeric.gdc_realn.bam 177560032 BAM chimeric harmonized CPTAC3 ad36e392-2643-4a20-b3c1-da30380327a6 ab36d46f8ed1a18eb58126fe6f0c37be {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.chimeric.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.chimeric.gdc_realn.bam 99384268 BAM chimeric harmonized CPTAC3 c3d56e1a-a21b-40da-9578-9bc4d4c4de11 16b2a442037b8976baae330e1f5a7e95 {"aliquot_tag": "ALQ_27f8b7f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.genomic.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.genomic.gdc_realn.bam 8040267838 BAM genomic harmonized CPTAC3 2cf13d19-b301-4a97-8264-59ee2c5716f5 9bc5d83e829991e964135984a9628603 {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.genomic.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.genomic.gdc_realn.bam 7697301844 BAM genomic harmonized CPTAC3 82a9dc65-077f-4a3c-9d60-a1542f6b30fc 2a0b13a1af12ff982faa86ce581d99a2 {"aliquot_tag": "ALQ_27f8b7f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.S48_R1.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R1_001.fastq.gz 4600491071 FASTQ S48_R1 submitted_unaligned CPTAC3 84f10a99-61c7-4dca-b385-cc6a9607bf63 433cad8d23755fae0c4c837094b0d8f5 {"aliquot_tag": "ALQ_27f8b7f3", "sample": "S48", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.S48_R2.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R2_001.fastq.gz 4838257828 FASTQ S48_R2 submitted_unaligned CPTAC3 dd5c5576-1205-4307-8461-6ab5077af79b 4e564c016206605b07034addf027cedc {"aliquot_tag": "ALQ_27f8b7f3", "sample": "S48", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.S4_L001_R1.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R1_001.fastq.gz 3871388385 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 74e51ef8-289c-4bff-aafc-4ee240cfc193 d55c672d1d02e47fe1e9f1041dac0f0a {"aliquot_tag": "ALQ_e2e454dd", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.S4_L001_R2.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R2_001.fastq.gz 4226618980 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 9b8d3278-927b-4b52-a93c-bfffa56c06ac af6456927b51bcc063ccf8a95e8a2bfd {"aliquot_tag": "ALQ_e2e454dd", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.transcriptome.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.transcriptome.gdc_realn.bam 10307178689 BAM transcriptome harmonized CPTAC3 3951e3ed-37cf-4108-9291-597b5494b7ea 658640a4c77d1bd7b6c333e102bc932a {"aliquot_tag": "ALQ_e2e454dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.RNA-Seq.transcriptome.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.transcriptome.gdc_realn.bam 5135834467 BAM transcriptome harmonized CPTAC3 c7533ffa-145f-40ee-bcd2-89f304c500f7 1a6669497d09f9b59b67c966b7b6bd8b {"aliquot_tag": "ALQ_27f8b7f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.WGS.N C3N-02693 HNSCC WGS blood_normal CPT0226170002 CPT0226170002.WholeGenome.RP-1303.bam 62103375088 BAM submitted_aligned CPTAC3 00226cb7-c3be-49dc-bd18-5b0c77d6ef9e 92f8ff0122dc40ec41e075344415724e {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02693.WGS.N.hg38 C3N-02693 HNSCC WGS blood_normal CPT0226170002 d1579373-d5d8-47b8-9623-c7f97cb20030_wgs_gdc_realn.bam 91781549091 BAM harmonized CPTAC3 fdf282ee-dd34-4bc8-adff-78d331b16b68 10e787e6d0abae2166ba3d3b51c4dcfd {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02693.WGS.T C3N-02693 HNSCC WGS tumor CPT0226130006 CPT0226130006.WholeGenome.RP-1303.bam 84613827791 BAM submitted_aligned CPTAC3 b53bbc0f-3ebb-43fa-89c8-2b82b67c2265 38979758c694d4eaffc3e7d035a911a1 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.WGS.T.hg38 C3N-02693 HNSCC WGS tumor CPT0226130006 efa1b208-4f4a-4d5b-aeb9-19531c78de54_wgs_gdc_realn.bam 128823088727 BAM harmonized CPTAC3 a7c8ad6e-8044-4d1e-9a8a-3eca35d871b1 090a45d4c82e11a034884bff23781198 {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.WXS.N C3N-02693 HNSCC WXS blood_normal CPT0226170002 CPT0226170002.WholeExome.RP-1303.bam 41548016707 BAM submitted_aligned CPTAC3 8e8f416d-db5b-48ee-a2a9-39e7fa843492 504a0d624808448f13460a459c75d541 {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02693.WXS.N.hg38 C3N-02693 HNSCC WXS blood_normal CPT0226170002 d1579373-d5d8-47b8-9623-c7f97cb20030_wxs_gdc_realn.bam 57061643128 BAM harmonized CPTAC3 5e32bf3d-4e7d-495c-883a-8a503a185767 b26e00eca1da697c0705b372f7e51168 {"aliquot_tag": "ALQ_80b62b95", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02693.WXS.T C3N-02693 HNSCC WXS tumor CPT0226130006 CPT0226130006.WholeExome.RP-1303.bam 21804215160 BAM submitted_aligned CPTAC3 d234a3fc-83e7-44b7-9f39-68a0567683eb d5a80d8a5084e90cae58ea659bdb46db {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02693.WXS.T.hg38 C3N-02693 HNSCC WXS tumor CPT0226130006 efa1b208-4f4a-4d5b-aeb9-19531c78de54_wxs_gdc_realn.bam 30309725819 BAM harmonized CPTAC3 6c2615ee-52cb-4204-bcdc-d395ecaa0e59 19a9fd589dc0e98b86cd519ae9fb328c {"aliquot_tag": "ALQ_725b494c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.MethArray.Green.T C3N-02694 HNSCC Methylation_Array tumor CPT0244890010 203219650096_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 831e5e9d-6158-4995-80b2-92ea56cdf934 015a8a7019228d67afe54300b3e7c23f {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.MethArray.Red.T C3N-02694 HNSCC Methylation_Array tumor CPT0244890010 203219650096_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 34b074da-3470-4cd1-9356-4aa732da79ca fd64c446709aaa12b6bca8b5537c638e {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.miRNA-Seq.S16_L005_R1.T C3N-02694 HNSCC miRNA-Seq tumor CPT0244890007 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L005_R1_001.unaln.bam 206425100 BAM S16_L005_R1 submitted_unaligned CPTAC3 363b4fcc-a43e-48bc-91b6-eb522a53145a 9ab570bcee0e4c9757d5e6e12a7c7c25 {"aliquot_tag": "ALQ_3913281d", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.miRNA-Seq.T.hg38 C3N-02694 HNSCC miRNA-Seq tumor CPT0244890007 861025db-c76e-4fa8-823f-bd6ab238146b_mirnaseq_gdc_realn.bam 231489108 BAM harmonized CPTAC3 32c3524a-e00f-4c66-b6e5-7654a7989a11 d0d470013f29163084b23c047fb85670 {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.chimeric.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.chimeric.gdc_realn.bam 44366750 BAM chimeric harmonized CPTAC3 174cb6dc-7bf1-4c9d-b6fe-8213f1128202 421bd9b70a021543286b7fadcd0c7705 {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.chimeric.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.chimeric.gdc_realn.bam 221097051 BAM chimeric harmonized CPTAC3 5bfdf9b2-bf3f-45fc-9178-4c43a721e672 9adc842c3ce731169cbf2d037a77c300 {"aliquot_tag": "ALQ_2691c069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.genomic.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.genomic.gdc_realn.bam 9642664716 BAM genomic harmonized CPTAC3 1d7fa6a0-98a0-4b55-8e1f-093a249e8c06 8c298f58b639b0c9ff2278222b1ab80a {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.genomic.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.genomic.gdc_realn.bam 10165314798 BAM genomic harmonized CPTAC3 ba8b422e-584b-44db-9e9c-7707ab72f1e6 72b4b6561356ee122c9c92e2d1ff6d42 {"aliquot_tag": "ALQ_2691c069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.S28_L006_R1.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R1_001.fastq.gz 4412189824 FASTQ S28_L006_R1 submitted_unaligned CPTAC3 6f6a88ca-3ce8-48d3-bc9c-3310f29ef266 33665d4dbc96d0607f309e78c721b6bf {"aliquot_tag": "ALQ_3913281d", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.S28_L006_R2.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R2_001.fastq.gz 4977946401 FASTQ S28_L006_R2 submitted_unaligned CPTAC3 61d55a69-ceb4-46cd-8fae-36e7df6467d2 d240d4d92807aa25000d26c3b4f8c0a5 {"aliquot_tag": "ALQ_3913281d", "sample": "S28", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.S7_R1.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R1_001.fastq.gz 6167749121 FASTQ S7_R1 submitted_unaligned CPTAC3 02fb8999-d5d4-42c2-a7de-ebdbb1506fca f55a108ea2463164c8b09d75b1b62d58 {"aliquot_tag": "ALQ_2691c069", "sample": "S7", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.S7_R2.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R2_001.fastq.gz 6280012353 FASTQ S7_R2 submitted_unaligned CPTAC3 cd666a5b-e253-4a56-994a-b87b88765d66 988623d606e9c0bd66adf595b3bf94dd {"aliquot_tag": "ALQ_2691c069", "sample": "S7", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.transcriptome.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.transcriptome.gdc_realn.bam 12502426721 BAM transcriptome harmonized CPTAC3 3bc315ec-df6c-4813-89f6-3a13aa9f18d5 856afe4b483d4e7ba0822c2d29215ff9 {"aliquot_tag": "ALQ_3913281d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.RNA-Seq.transcriptome.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.transcriptome.gdc_realn.bam 5419271889 BAM transcriptome harmonized CPTAC3 2705950e-a145-4b04-bb2c-0394985e64d8 2236f09e0e285c55370f1f691cfbfce7 {"aliquot_tag": "ALQ_2691c069", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.WGS.N C3N-02694 HNSCC WGS blood_normal CPT0244930002 CPT0244930002.WholeGenome.RP-1303.bam 93171397447 BAM submitted_aligned CPTAC3 10aae5db-058f-4c0f-9d1d-752d465a0650 074c2e397743b5069ae4e1e44b125942 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02694.WGS.N.hg38 C3N-02694 HNSCC WGS blood_normal CPT0244930002 5032a164-9956-4fa5-acea-46f50f7eb1dd_wgs_gdc_realn.bam 136426212143 BAM harmonized CPTAC3 c8377306-0b3c-4195-b67e-32365368c6e9 b2d7c7a3d299caf39c097729de381d86 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02694.WGS.T C3N-02694 HNSCC WGS tumor CPT0244890010 CPT0244890010.WholeGenome.RP-1303.bam 57056337315 BAM submitted_aligned CPTAC3 83bf11f5-fd3e-4243-bdc2-5353e0bae0ab c538dcea2d72f029793d594fdc832071 {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.WGS.T.hg38 C3N-02694 HNSCC WGS tumor CPT0244890010 cd42de5b-0725-4112-848f-99b74c1e56ee_wgs_gdc_realn.bam 84381117789 BAM harmonized CPTAC3 67e5a326-497a-4b94-b331-07d84f8bd362 b836abe78515cff17f86b176ed6352f5 {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.WXS.N C3N-02694 HNSCC WXS blood_normal CPT0244930002 CPT0244930002.WholeExome.RP-1303.bam 26215752749 BAM submitted_aligned CPTAC3 d8c7cf8e-36cc-48b7-b01c-37d8e19c583f 16ba700fa6a867ec28135d241bac3572 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02694.WXS.N.hg38 C3N-02694 HNSCC WXS blood_normal CPT0244930002 5032a164-9956-4fa5-acea-46f50f7eb1dd_wxs_gdc_realn.bam 35451596856 BAM harmonized CPTAC3 4aa080b1-72aa-468b-b377-469f764caeed c95c58e9dabf65ae7c6f849d301f97e0 {"aliquot_tag": "ALQ_c8951796", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02694.WXS.T C3N-02694 HNSCC WXS tumor CPT0244890010 CPT0244890010.WholeExome.RP-1303.bam 28428997616 BAM submitted_aligned CPTAC3 c7e114b3-9c99-45de-baed-44740afdf5b5 02d78bce263f4f0690f1ea15bee19b38 {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02694.WXS.T.hg38 C3N-02694 HNSCC WXS tumor CPT0244890010 cd42de5b-0725-4112-848f-99b74c1e56ee_wxs_gdc_realn.bam 38534405227 BAM harmonized CPTAC3 2fc51576-0582-4748-922e-fd45317947d0 a68d93e2b3b5f318d0b2e68964e319ca {"aliquot_tag": "ALQ_be6c8cff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.MethArray.Green.T C3N-02695 HNSCC Methylation_Array tumor CPT0244940010 203271740156_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 9c287c03-1da0-4a38-be11-b8ebf0d149e2 554bbf0fad177a18478a85aa13319964 {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.MethArray.Red.T C3N-02695 HNSCC Methylation_Array tumor CPT0244940010 203271740156_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 179061df-16f3-42ea-bb14-8451abfb6b40 5e9fd9af9de4fd7de29e55fb5ae0e533 {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.miRNA-Seq.S17_L005_R1.T C3N-02695 HNSCC miRNA-Seq tumor CPT0244940007 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L005_R1_001.unaln.bam 165022965 BAM S17_L005_R1 submitted_unaligned CPTAC3 33a8747f-d204-4077-9dd8-1a66a08d3718 471795e6a03d93e9f1ded1a23d39339f {"aliquot_tag": "ALQ_adf3f09", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.miRNA-Seq.T.hg38 C3N-02695 HNSCC miRNA-Seq tumor CPT0244940007 ed28d012-5e4d-4e77-a8b1-32daa1992211_mirnaseq_gdc_realn.bam 182293281 BAM harmonized CPTAC3 67bf1c52-f6b2-4a5b-973f-3997ca806e43 85defd3c5a1816cdfa60a5ad0de6dc42 {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.chimeric.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.chimeric.gdc_realn.bam 39583534 BAM chimeric harmonized CPTAC3 8ff5777c-666f-49ee-9b2a-910c646b5e4e 35b063e987dfb0b9413d5afe4f50ec4b {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.chimeric.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.chimeric.gdc_realn.bam 22780574 BAM chimeric harmonized CPTAC3 825e9b9c-b47b-40b3-a953-b89707aced7c de274a3da1d576382bd28ef40764298a {"aliquot_tag": "ALQ_a4c157b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.genomic.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.genomic.gdc_realn.bam 10172193440 BAM genomic harmonized CPTAC3 b9bad19b-d11e-4701-ba53-1c4a40e60c80 a91196bb1dbf0265ed221e468c15a9db {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.genomic.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.genomic.gdc_realn.bam 19181571666 BAM genomic harmonized CPTAC3 c9bef1fb-65cc-48be-b028-63571f7d144f 2e157dbd30a4e0db740c637633123531 {"aliquot_tag": "ALQ_a4c157b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.S27_R1.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R1_001.fastq.gz 3935541562 FASTQ S27_R1 submitted_unaligned CPTAC3 8cf5b98a-33d5-4963-b543-4cfccab04b63 66aba162234355d9686083a43ab5ca9b {"aliquot_tag": "ALQ_a4c157b8", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.S27_R2.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R2_001.fastq.gz 3789177374 FASTQ S27_R2 submitted_unaligned CPTAC3 51cc4873-048b-4623-9115-f64abec58f85 f1b32accaa8e4c219f559dbccad82072 {"aliquot_tag": "ALQ_a4c157b8", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.S29_L007_R1.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R1_001.fastq.gz 4558496841 FASTQ S29_L007_R1 submitted_unaligned CPTAC3 f2ba1302-ceab-42a5-b7e7-01023c19cb88 369274d947660f1edcde3591cc0e08b4 {"aliquot_tag": "ALQ_adf3f09", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.S29_L007_R2.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R2_001.fastq.gz 5075426698 FASTQ S29_L007_R2 submitted_unaligned CPTAC3 6137e440-7a72-42e9-adf9-62473175c411 c53d2b82a30e75fd0cef43c959281a53 {"aliquot_tag": "ALQ_adf3f09", "sample": "S29", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.transcriptome.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.transcriptome.gdc_realn.bam 14225142264 BAM transcriptome harmonized CPTAC3 41776784-6f55-4995-96f8-1e22bb5a8d1f f83f4a15b517030e2fc54a47f9e85ad6 {"aliquot_tag": "ALQ_adf3f09", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.RNA-Seq.transcriptome.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.transcriptome.gdc_realn.bam 3304748993 BAM transcriptome harmonized CPTAC3 a8a3d354-0d44-4b81-8471-a6fa9683ecc7 9c196d4eb46575f1f2fa4c3a3df1c962 {"aliquot_tag": "ALQ_a4c157b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.WGS.N C3N-02695 HNSCC WGS blood_normal CPT0245000002 CPT0245000002.WholeGenome.RP-1303.bam 55578416635 BAM submitted_aligned CPTAC3 675ef008-63cb-4c13-933f-a46efe0d1c85 99f5b52cbf1007d79ba4e6e83f08d47b {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02695.WGS.N.hg38 C3N-02695 HNSCC WGS blood_normal CPT0245000002 280e96da-7858-45c8-9e2b-1cd59b3fa4a5_wgs_gdc_realn.bam 81606449915 BAM harmonized CPTAC3 abe6c00b-6d93-454a-b545-0b39ee75b586 43478cc0434bc03959f524e42ff536a5 {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02695.WGS.T C3N-02695 HNSCC WGS tumor CPT0244940010 CPT0244940010.WholeGenome.RP-1303.bam 90185006269 BAM submitted_aligned CPTAC3 d82d6503-897e-4691-9585-bf1080dc7e86 1f110f2babc0e13847a8a31e67ff51bc {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.WGS.T.hg38 C3N-02695 HNSCC WGS tumor CPT0244940010 ed4abe3e-4046-4eb6-9760-036fd53f3af5_wgs_gdc_realn.bam 133717253558 BAM harmonized CPTAC3 62682f81-9ab9-4307-bff5-831daabd785c 15f111c22f8f5d7085142a2cff8a767c {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.WXS.N C3N-02695 HNSCC WXS blood_normal CPT0245000002 CPT0245000002.WholeExome.RP-1303.bam 24508910216 BAM submitted_aligned CPTAC3 a005948d-77d6-4c1b-a0ce-94d3d8222a35 1518de085ea86b305c39331622b62e0f {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02695.WXS.N.hg38 C3N-02695 HNSCC WXS blood_normal CPT0245000002 280e96da-7858-45c8-9e2b-1cd59b3fa4a5_wxs_gdc_realn.bam 33321790265 BAM harmonized CPTAC3 254a5b1d-3581-4940-a0a6-1f9d0feb4cc6 7eef1e4345ef339c1915948d7b22bb4f {"aliquot_tag": "ALQ_e4d373a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02695.WXS.T C3N-02695 HNSCC WXS tumor CPT0244940010 CPT0244940010.WholeExome.RP-1303.bam 48153539053 BAM submitted_aligned CPTAC3 2d58c04b-135a-46f5-8e07-78cd8c22e4df 7743fb59f788c3dc1d6293581c25268e {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02695.WXS.T.hg38 C3N-02695 HNSCC WXS tumor CPT0244940010 ed4abe3e-4046-4eb6-9760-036fd53f3af5_wxs_gdc_realn.bam 65755098091 BAM harmonized CPTAC3 652a39ee-ec5d-4f2d-9344-ba1f77d6ae74 bbd99ea38188af28a1671bc2073cb4e6 {"aliquot_tag": "ALQ_8da09beb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.ANN_35d1d74b.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.chimeric.gdc_realn.bam 527897923 BAM chimeric harmonized CPTAC3 a9af1c2e-158b-4a48-96b1-9bf297c50706 efe76d5d0a8a8a78bca521d98761be4f {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.ANN_35d1d74b.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.genomic.gdc_realn.bam 12821998307 BAM genomic harmonized CPTAC3 ee143b84-6464-4788-b4fd-970f92bcba55 704e7f6e94de63b4d76ca1dfcf15144a {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.ANN_35d1d74b.RNA-Seq.S2_L005_R1.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R1_001.fastq.gz 5395654595 FASTQ S2_L005_R1 submitted_unaligned CPTAC3 d21f8288-6844-4693-9f81-781a52b7c925 19b83578d3544646e37a0408704a5974 {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.ANN_35d1d74b.RNA-Seq.S2_L005_R2.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R2_001.fastq.gz 6089753546 FASTQ S2_L005_R2 submitted_unaligned CPTAC3 6657cbe8-77b7-4d68-a44a-be781736d0a8 50ae117fc3ad64a517528d924a5287d3 {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.ANN_35d1d74b.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.transcriptome.gdc_realn.bam 14240909465 BAM transcriptome harmonized CPTAC3 1b3af2b8-1543-4065-8858-c292dd1118bb dd2047b7cb2fc326c7b584e5083c57f4 {"aliquot_tag": "ANN_35d1d74b", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_2737e1d9.RNA-Seq.chimeric.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.chimeric.gdc_realn.bam 533779278 BAM chimeric harmonized CPTAC3 50c0f55b-cf5f-4a84-9304-31a6537b5a15 376b31af19c7af8ae63cd88a13d7098c {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_2737e1d9.RNA-Seq.genomic.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.genomic.gdc_realn.bam 8239230714 BAM genomic harmonized CPTAC3 bb3014e0-ada9-4ae0-82a3-185a6c1576be 2e724f165d7349561f8ae83f7e5d2fce {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_2737e1d9.RNA-Seq.S14_L005_R1.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R1_001.fastq.gz 3879434642 FASTQ S14_L005_R1 submitted_unaligned CPTAC3 fbccd334-cb51-4a83-94cd-ccae217f563d 17bb63ef743a23902e9fbf6efc2a559e {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_2737e1d9.RNA-Seq.S14_L005_R2.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R2_001.fastq.gz 4168570690 FASTQ S14_L005_R2 submitted_unaligned CPTAC3 2c98d1d4-8184-436b-a163-4d7ceb2b71d2 6c9e378cf5eaccf7bca21ff9f989c190 {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_2737e1d9.RNA-Seq.transcriptome.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.transcriptome.gdc_realn.bam 9498415514 BAM transcriptome harmonized CPTAC3 642b28d8-e329-4f38-8bc9-3d7a49922d42 bcf8749ee8098b4068352b308b674f1f {"aliquot_tag": "DUP_2737e1d9", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_2ccae60a.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.chimeric.gdc_realn.bam 297118867 BAM chimeric harmonized CPTAC3 1609d96f-62fb-4c35-9128-7f72df84bb4d 84ed9795df7f794cf630a9787c11b4a2 {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_2ccae60a.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.genomic.gdc_realn.bam 12426252115 BAM genomic harmonized CPTAC3 7518b12c-f457-4759-9f59-a6c2aa3a93bd c0be068ebd656d6f6a2814d7e04b65d3 {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_2ccae60a.RNA-Seq.S9_L003_R1.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 5674534162 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 2d61c60e-e794-459f-84d1-ef96c6629ff3 5062fa2c0b53926c19bb6a19f9ed1a5f {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_2ccae60a.RNA-Seq.S9_L003_R2.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 6239096360 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 f592aca1-a466-4c6b-a2c9-91baf38ff58c 1930a05fa433f714f6ff7beafe4f8f5e {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_2ccae60a.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.transcriptome.gdc_realn.bam 13294874592 BAM transcriptome harmonized CPTAC3 86b78d1c-656c-43d5-819c-979dc6fca912 e7de4d70ae9bbe293d7a9d16ef0d327c {"aliquot_tag": "DUP_2ccae60a", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_527b9ab7.WXS.T C3N-02696 PDA WXS tumor CPT0187720034 CPT0187720034.WholeExome.RP-1303.bam 26525491459 BAM submitted_aligned CPTAC3 0e1bf386-d80a-4099-9743-7e5c7416d54a 54c28f3934b6466b81885d01e2a4fc44 {"aliquot_tag": "DUP_527b9ab7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_527b9ab7.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720034 3fb95744-5c41-4471-9df3-546ee2b8e71e_wxs_gdc_realn.bam 36400384902 BAM harmonized CPTAC3 ea05ae7a-d363-4851-88ee-4711b46ddecf 0d86f5feac096bf4193d0178c3785307 {"aliquot_tag": "DUP_527b9ab7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_58d5e331.WXS.N C3N-02696 PDA WXS blood_normal CPT0187770002 CPT0187770002.WholeExome.RP-1303.bam 30426628672 BAM submitted_aligned CPTAC3 2100a057-46d9-405e-a8d1-28fd7e79074b d2e40c042d5fd9932975e453c7d52ab3 {"aliquot_tag": "DUP_58d5e331", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02696.DUP_58d5e331.WXS.N.hg38 C3N-02696 PDA WXS blood_normal CPT0187770002 cd44d8e9-d1db-43ee-854d-6482cc2cecc3_wxs_gdc_realn.bam 41477207661 BAM harmonized CPTAC3 7cfa912c-2445-4423-9113-4967da503f4e d72036774f71d8f7ec248faf4b4e76a4 {"aliquot_tag": "DUP_58d5e331", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02696.DUP_bb183f82.WXS.T C3N-02696 PDA WXS tumor CPT0187720032 CPT0187720032.WholeExome.RP-1303.bam 26275991837 BAM submitted_aligned CPTAC3 b85cc756-a350-4145-8661-76900a626368 9fe25406f53d5d398a47049ca975b627 {"aliquot_tag": "DUP_bb183f82", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_bb183f82.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720032 5c1e57f9-b763-4096-8efe-ad4938f28f28_wxs_gdc_realn.bam 37859899802 BAM harmonized CPTAC3 e19f85e5-6493-4350-8805-594adbee928c c5b98435f5b460b82c2afbc19bb2862a {"aliquot_tag": "DUP_bb183f82", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_be3eb063.RNA-Seq.chimeric.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.chimeric.gdc_realn.bam 153590444 BAM chimeric harmonized CPTAC3 63956fcc-723b-45d1-9fac-d45b52ddf737 b08e6956acf263a9ed56f89912e60845 {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_be3eb063.RNA-Seq.genomic.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.genomic.gdc_realn.bam 6564071542 BAM genomic harmonized CPTAC3 0e70657d-b298-4401-a950-81125c39f6b9 bd607053f1211d18b6e2afee833aa4fd {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_be3eb063.RNA-Seq.S11_L003_R1.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3150886063 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 179e310a-ac0b-4117-acc3-2348212cf312 91a4ba94ffe1d7f4a363651ef33bd2db {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_be3eb063.RNA-Seq.S11_L003_R2.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3377145906 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 edb35be5-33e0-45ba-b587-b4a5b62b96d4 984fcf990bb017f4e2a87fac9603934c {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_be3eb063.RNA-Seq.transcriptome.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.transcriptome.gdc_realn.bam 9617546428 BAM transcriptome harmonized CPTAC3 f25f34aa-e85f-44c9-be6f-94327e62db90 4af403651a18a72191c6b96c1096b34b {"aliquot_tag": "DUP_be3eb063", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02696.DUP_cc1f0f14.WXS.T C3N-02696 PDA WXS tumor CPT0187720033 CPT0187720033.WholeExome.RP-1303.bam 24274340836 BAM submitted_aligned CPTAC3 7bf03c0c-2177-448a-a58c-9d0f8fe5ab32 0a8e39c5ffd4092f7fe840453089c76f {"aliquot_tag": "DUP_cc1f0f14", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02696.DUP_cc1f0f14.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720033 4550480f-f067-49e8-b363-a6ef86e7f3a0_wxs_gdc_realn.bam 33713968747 BAM harmonized CPTAC3 efcfaeab-730f-4a73-abc6-997b95dceaed 1bc70a8881e4ee9ed76ac1b395560bec {"aliquot_tag": "DUP_cc1f0f14", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02697.MethArray.Green.T C3N-02697 PDA Methylation_Array tumor CPT0187780007 203561620153_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4814ffc2-1abf-44ca-96a1-10fcb0852a1a 6be61a0ee3cfbd0c2805600bfa5d2ff3 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.MethArray.Red.T C3N-02697 PDA Methylation_Array tumor CPT0187780007 203561620153_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 12bfe7b1-a658-47c6-98f3-625f27ad343d cfdea2962c4bce127a72aa5f76aaa566 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.miRNA-Seq.S2_L004_R1.T C3N-02697 PDA miRNA-Seq tumor CPT0187780010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGAGC_S2_L004_R1_001.unaln.bam 155578609 BAM S2_L004_R1 submitted_unaligned CPTAC3 e70a32ad-5c49-4800-8705-82ed3489cc87 5192a8a730599bcce381c97ea0098e31 {"aliquot_tag": "ALQ_2d90248d", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.miRNA-Seq.T.hg38 C3N-02697 PDA miRNA-Seq tumor CPT0187780010 92678b1a-17a6-4e15-88ea-f2ebd3f1a705_mirnaseq_gdc_realn.bam 175218702 BAM harmonized CPTAC3 dd991044-a44e-42d3-b3e1-b7f7aa9acf05 0bd9538a464325ca8f78004d12cf75db {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.RNA-Seq.chimeric.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.chimeric.gdc_realn.bam 38129331 BAM chimeric harmonized CPTAC3 c95cde69-587e-4067-a307-0dbe044d4791 77b89f7cc0a330d383ac9ae85c014a26 {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.RNA-Seq.genomic.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.genomic.gdc_realn.bam 9109969658 BAM genomic harmonized CPTAC3 432d2d4c-c62e-466d-87f4-e5b5ed65c173 4cb7409e1659eee6364d9c944128bc31 {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.RNA-Seq.S10_L003_R1.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 4039843803 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 3af97fc0-6065-4f6a-8721-134c0800f159 e48b2857aa202cb163ab51361041beeb {"aliquot_tag": "ALQ_2d90248d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.RNA-Seq.S10_L003_R2.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4601498429 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 d2001364-38f0-4745-963b-acefe25a8f22 aa0f91d91eb1cb11008020199581d39b {"aliquot_tag": "ALQ_2d90248d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.RNA-Seq.transcriptome.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.transcriptome.gdc_realn.bam 11255074817 BAM transcriptome harmonized CPTAC3 ecebd7af-834e-43be-9645-b05e397c0fa2 b9eae79ba195d0fe7b6463538f418b69 {"aliquot_tag": "ALQ_2d90248d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.WGS.N C3N-02697 PDA WGS blood_normal CPT0187800002 CPT0187800002.WholeGenome.RP-1303.bam 71530873228 BAM submitted_aligned CPTAC3 160c6ba2-2afb-4c8a-a870-8a4ff5ce72ad e67abb62145a1431ffc4e3ed55efee56 {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02697.WGS.N.hg38 C3N-02697 PDA WGS blood_normal CPT0187800002 f93936bb-8321-4662-84e8-04ca6bae8841_wgs_gdc_realn.bam 105102884811 BAM harmonized CPTAC3 6a1a0705-71cf-471f-a698-25110c1e7665 960523cec50fa7c8f2eed9f6c40b3f40 {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02697.WGS.T C3N-02697 PDA WGS tumor CPT0187780007 CPT0187780007.WholeGenome.RP-1303.bam 135293604911 BAM submitted_aligned CPTAC3 a8afd049-ab10-483d-b862-b96e68f048f8 682d0cc9dc86200f78999c062f9f21bb {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.WGS.T.hg38 C3N-02697 PDA WGS tumor CPT0187780007 e497d157-0722-42e7-b1aa-63f7d6eb4806_wgs_gdc_realn.bam 197259756960 BAM harmonized CPTAC3 cde34be4-e9fc-4960-bf7c-cda7d9f0a5ff b33af6cea26e5a3e93212dd7ab7ae000 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.WXS.N C3N-02697 PDA WXS blood_normal CPT0187800002 CPT0187800002.WholeExome.RP-1303.bam 24802549493 BAM submitted_aligned CPTAC3 288393cb-0234-4a45-9500-b17ba2bcb007 a9837c033cf64cfb465d8336c54971ea {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02697.WXS.N.hg38 C3N-02697 PDA WXS blood_normal CPT0187800002 f93936bb-8321-4662-84e8-04ca6bae8841_wxs_gdc_realn.bam 33379723136 BAM harmonized CPTAC3 0a090199-b5fe-44f0-96b2-e0fd5a5c72ef 1ece8dea25a654e43d9eaef3e37ce073 {"aliquot_tag": "ALQ_1ba38df4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02697.WXS.T C3N-02697 PDA WXS tumor CPT0187780007 CPT0187780007.WholeExome.RP-1303.bam 51248002336 BAM submitted_aligned CPTAC3 c41d6d48-cc1a-4293-97ae-8bd8569cbc42 241d1bb035a8f2b5d1a2490da41f4ef0 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02697.WXS.T.hg38 C3N-02697 PDA WXS tumor CPT0187780007 e497d157-0722-42e7-b1aa-63f7d6eb4806_wxs_gdc_realn.bam 70226509934 BAM harmonized CPTAC3 0f16e270-7cd9-4225-aeba-8cba1cf02e3b dbd6c61cea8cd403b6832fe2e4080240 {"aliquot_tag": "ALQ_aaef806f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02700.MethArray.Green.T C3N-02700 HNSCC Methylation_Array tumor CPT0177010006 203219650047_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7378fbc8-e1ab-44b7-83ba-993598d67df5 c745155f7261d8c0c6f5a7f72e5bdd00 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.MethArray.Red.T C3N-02700 HNSCC Methylation_Array tumor CPT0177010006 203219650047_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 4519e8e1-bc1b-4b71-848e-c7afe06593dd 4edacf67087cfbcfd03879b73e7c3463 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.miRNA-Seq.S7_L001_R1.T C3N-02700 HNSCC miRNA-Seq tumor CPT0177010009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L001_R1_001.unaln.bam 243249333 BAM S7_L001_R1 submitted_unaligned CPTAC3 9bea4471-5f0c-4ef5-b9a6-901d9b978cd2 918fd72ba5077e38e970a5fe983757bf {"aliquot_tag": "ALQ_8462ed0d", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.miRNA-Seq.T.hg38 C3N-02700 HNSCC miRNA-Seq tumor CPT0177010009 b2f73d1f-bebd-472f-86b7-fd8d26a6c74a_mirnaseq_gdc_realn.bam 267872063 BAM harmonized CPTAC3 07ec6e4e-5fc3-46e8-9f68-dd8dd9142a53 f0864f084110fa98810830e3fef03499 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.chimeric.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.chimeric.gdc_realn.bam 333065920 BAM chimeric harmonized CPTAC3 9ec88ca7-b26b-49f5-b7da-ce65e8f53606 a324d5f5a47901ebcf5e6d62a1963cf6 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.chimeric.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.chimeric.gdc_realn.bam 2087327 BAM chimeric harmonized CPTAC3 1ec1e2e3-33a3-4aed-99a9-2f0f3c267f38 bfdb0855dcd55e458f30d9bf18b1f6ac {"aliquot_tag": "ALQ_6622f2be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.genomic.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.genomic.gdc_realn.bam 8844652422 BAM genomic harmonized CPTAC3 630a9898-48d9-432b-b8c7-e231ebef5960 0a6765f0f09a6af6f39c4cab08a2b187 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.genomic.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.genomic.gdc_realn.bam 5824664527 BAM genomic harmonized CPTAC3 ce425d5c-ab86-4a42-bf5e-09c12d9478ab 7222eeeaab883a6624605ce07fba1278 {"aliquot_tag": "ALQ_6622f2be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.S16_R1.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R1_001.fastq.gz 2637938442 FASTQ S16_R1 submitted_unaligned CPTAC3 bffb41d6-19e2-43c6-a0aa-885b8e15bcb5 948bc6b1d7cff07590f8a0d45c53cba3 {"aliquot_tag": "ALQ_6622f2be", "sample": "S16", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.S16_R2.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R2_001.fastq.gz 2943138635 FASTQ S16_R2 submitted_unaligned CPTAC3 fb953b37-fc0e-49ca-8a6a-07a3b0ef8905 3548b33cebce9c98657319af78b239b3 {"aliquot_tag": "ALQ_6622f2be", "sample": "S16", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.S8_L002_R1.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4062433781 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 319a077c-3031-4fbe-9958-4577b5919304 8c61dfa9b7b9b335fa27707024bc632c {"aliquot_tag": "ALQ_8462ed0d", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.S8_L002_R2.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4516828840 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 01f59131-90c2-4ae2-bbb2-e18463f8577c 4f4eaaf4872e6071607927d8f4c2b36e {"aliquot_tag": "ALQ_8462ed0d", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.transcriptome.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.transcriptome.gdc_realn.bam 10867273856 BAM transcriptome harmonized CPTAC3 45d525d8-4cb6-448c-b28d-8c4f94fc145e ff3e2c1b7422cf019545823b806d1512 {"aliquot_tag": "ALQ_8462ed0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.RNA-Seq.transcriptome.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.transcriptome.gdc_realn.bam 5317413113 BAM transcriptome harmonized CPTAC3 c47e3231-da5f-4bab-9853-f123d68a236e c0ec2f3239574dc7ac8455b4faa00387 {"aliquot_tag": "ALQ_6622f2be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.WGS.N C3N-02700 HNSCC WGS blood_normal CPT0177130002 CPT0177130002.WholeGenome.RP-1303.bam 65959456085 BAM submitted_aligned CPTAC3 7b064650-af3e-42da-b0df-734ccc4990c3 dbc6eb0a1e9498059dda415f933c8d9f {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02700.WGS.N.hg38 C3N-02700 HNSCC WGS blood_normal CPT0177130002 c7ba6d5b-3412-4e38-aedc-4a55db1c2449_wgs_gdc_realn.bam 96217644096 BAM harmonized CPTAC3 aeaf78a2-50fd-4520-adac-0f17264cfd93 08027a10e2678394aa3777cdb1320728 {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02700.WGS.T C3N-02700 HNSCC WGS tumor CPT0177010006 CPT0177010006.WholeGenome.RP-1303.bam 89825070533 BAM submitted_aligned CPTAC3 d62952b7-0b11-4361-a619-9711ee873d3a 616824dd0333afa4bd2ae8f4a361afa8 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.WGS.T.hg38 C3N-02700 HNSCC WGS tumor CPT0177010006 fbabe3a3-fe14-4f2c-843c-6133204516cb_wgs_gdc_realn.bam 131210418611 BAM harmonized CPTAC3 ca5bf1c0-8f3a-4e70-9047-50bef043d3ae e2a342d04b3db9f0f7835d6bc300bf7e {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.WXS.N C3N-02700 HNSCC WXS blood_normal CPT0177130002 CPT0177130002.WholeExome.RP-1303.bam 27220670297 BAM submitted_aligned CPTAC3 8034789f-4323-44b3-8980-f847ed90a7fe 9fa2f33d67d88aa746f1c4bba6dc51a5 {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02700.WXS.N.hg38 C3N-02700 HNSCC WXS blood_normal CPT0177130002 c7ba6d5b-3412-4e38-aedc-4a55db1c2449_wxs_gdc_realn.bam 36528706450 BAM harmonized CPTAC3 78725765-d4f7-41d2-ade3-2f3c696184ae 5dffd2e89cb7cd1a89312823d648faf8 {"aliquot_tag": "ALQ_a22cb440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02700.WXS.T C3N-02700 HNSCC WXS tumor CPT0177010006 CPT0177010006.WholeExome.RP-1303.bam 19720424902 BAM submitted_aligned CPTAC3 cc6f27ed-c52f-4237-bca1-f1c6c8e374f0 1de62df88658403625612d2e6f6e18b6 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02700.WXS.T.hg38 C3N-02700 HNSCC WXS tumor CPT0177010006 fbabe3a3-fe14-4f2c-843c-6133204516cb_wxs_gdc_realn.bam 27004712849 BAM harmonized CPTAC3 04c61e7c-04e8-4ed4-a122-9d4e3e6332a4 1f1c830e9a06e4682ae0c94bae3d9078 {"aliquot_tag": "ALQ_14ddf09c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.MethArray.Green.A C3N-02713 HNSCC Methylation_Array tissue_normal CPT0190860009 203273200073_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c223a90e-e056-41d3-90cc-3e7be4377dfd f0228b5bf2692e4b09a49e012c1eaa1e {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.MethArray.Green.T C3N-02713 HNSCC Methylation_Array tumor CPT0190850006 203220070084_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 7a74c016-2a22-40ab-bf0b-f345f63f142a b23f738009f46873a825f2696ce7e592 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.MethArray.Red.A C3N-02713 HNSCC Methylation_Array tissue_normal CPT0190860009 203273200073_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 4e93e0ce-fd72-403c-a422-9be7a5cd4e4f 389f418a94307738c36878a16fea5886 {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.MethArray.Red.T C3N-02713 HNSCC Methylation_Array tumor CPT0190850006 203220070084_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 d5a6301e-6600-475d-a758-ddd2196927f5 4a9392fd7e005600b087441407dbd0e2 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.miRNA-Seq.A.hg38 C3N-02713 HNSCC miRNA-Seq tissue_normal CPT0190860006 0ad2f2e0-a6a4-4fce-842f-b6a95a5fce4b_mirnaseq_gdc_realn.bam 236287994 BAM harmonized CPTAC3 cf50af66-5d61-40ed-80bd-b78f756f5b94 b3bc10fd9cef0853ec0149d60e841e8f {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.miRNA-Seq.S18_L003_R1.A C3N-02713 HNSCC miRNA-Seq tissue_normal CPT0190860006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L003_R1_001.unaln.bam 207170403 BAM S18_L003_R1 submitted_unaligned CPTAC3 2cc9853b-327c-45d3-aae2-54d10e8b9982 ce98f2fd3dfb80c395dba585ccbacd64 {"aliquot_tag": "ALQ_9a83825d", "sample": "S18", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.miRNA-Seq.S7_L003_R1.T C3N-02713 HNSCC miRNA-Seq tumor CPT0190850009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L003_R1_001.unaln.bam 231962904 BAM S7_L003_R1 submitted_unaligned CPTAC3 22876e3c-a1b3-4100-8a67-5e80b265b7de aea151dce7170eb413b0d15b3ad643a1 {"aliquot_tag": "ALQ_4d9ce51c", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.miRNA-Seq.T.hg38 C3N-02713 HNSCC miRNA-Seq tumor CPT0190850009 9fd7d10d-cd94-425a-acda-45ed003a252d_mirnaseq_gdc_realn.bam 262240674 BAM harmonized CPTAC3 ffb61a67-c9a6-43f3-b585-1d4347f30753 7fdb71340962de3d07ed5707c7e1bd16 {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.chimeric.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.chimeric.gdc_realn.bam 172294954 BAM chimeric harmonized CPTAC3 72c2d1c4-ec92-4f53-b209-921bddaf7299 0e9f126cfbbba0fce72733dc7956aaf2 {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.RNA-Seq.chimeric.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.chimeric.gdc_realn.bam 372130879 BAM chimeric harmonized CPTAC3 0b62eb52-5caf-4a0b-b1ca-5792e35d0472 6b89fc9960b12f1648b11d9fe97e5e98 {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.chimeric.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.chimeric.gdc_realn.bam 240598868 BAM chimeric harmonized CPTAC3 9873ca29-1c4c-4c33-891e-2a4d952e882d 4048d3c07a9376b93a8a3696ff281fe3 {"aliquot_tag": "ALQ_9facb16e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.genomic.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.genomic.gdc_realn.bam 8126084783 BAM genomic harmonized CPTAC3 91ea79b4-5107-4c7f-9b54-fe7c01d7cecb 56715d64a4cc045222458ca66b012e83 {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.RNA-Seq.genomic.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.genomic.gdc_realn.bam 9069013422 BAM genomic harmonized CPTAC3 3e7b9a2f-f358-46e4-81d6-57c427b64fdc 0b51f9f10a63ec7219a66ad58079694d {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.genomic.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.genomic.gdc_realn.bam 10183591924 BAM genomic harmonized CPTAC3 49286e4b-6945-4042-ab08-ab8e69bca26f 4c7d6471ddf900978410b142276c407f {"aliquot_tag": "ALQ_9facb16e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.S3_L001_R1.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R1_001.fastq.gz 4245817048 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 338d0330-d99c-4bf4-a11e-1db9aa097111 623014745213ed5700415104862b5ac4 {"aliquot_tag": "ALQ_4d9ce51c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.S3_L001_R2.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R2_001.fastq.gz 4803689580 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 d5711786-9237-41be-a275-40a299c3467b 7117c05b39ae41a848c318c9e5d525c4 {"aliquot_tag": "ALQ_4d9ce51c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.S4_L007_R1.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R1_001.fastq.gz 3823210591 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 40aa5ffd-45cb-4efc-b9d7-53dd5268d2fa 0bf7a71b7be5e68a500fb25aff3dde3d {"aliquot_tag": "ALQ_9a83825d", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.RNA-Seq.S4_L007_R2.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R2_001.fastq.gz 3929758484 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 b4c28fc1-5a8c-4507-854a-a958fb9c7271 464f0d8179aaf058591d53f71162a007 {"aliquot_tag": "ALQ_9a83825d", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.RNA-Seq.S61_R1.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R1_001.fastq.gz 5969543465 FASTQ S61_R1 submitted_unaligned CPTAC3 65bf5c81-1fdf-4e3f-8af1-c5a8b89eba91 f6ba27babb015c4d738ffa1f9a4615ed {"aliquot_tag": "ALQ_9facb16e", "sample": "S61", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.S61_R2.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R2_001.fastq.gz 6201097139 FASTQ S61_R2 submitted_unaligned CPTAC3 be7f1837-2a57-43e4-9754-b5bfacf23866 194a900587d9baddac812bc5205d9f43 {"aliquot_tag": "ALQ_9facb16e", "sample": "S61", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.transcriptome.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.transcriptome.gdc_realn.bam 10508551470 BAM transcriptome harmonized CPTAC3 abf52725-40f5-4604-8286-938b5c85b8c4 61aa23a1005874d1c3f5ddf8e87ad7c6 {"aliquot_tag": "ALQ_9a83825d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.RNA-Seq.transcriptome.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.transcriptome.gdc_realn.bam 9693312591 BAM transcriptome harmonized CPTAC3 748738b3-a89a-4f56-a846-fe783754d53c 565a48aa414aae5f22986dd8b2ffc929 {"aliquot_tag": "ALQ_4d9ce51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.RNA-Seq.transcriptome.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.transcriptome.gdc_realn.bam 4588693820 BAM transcriptome harmonized CPTAC3 ab75b7ab-4509-4b7e-9e17-7e30a6edbdb5 6f272a99921280a6419160dc9ee80414 {"aliquot_tag": "ALQ_9facb16e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.WGS.N C3N-02713 HNSCC WGS blood_normal CPT0190950002 CPT0190950002.WholeGenome.RP-1303.bam 56872296263 BAM submitted_aligned CPTAC3 0f7fc2c9-e574-4f99-b220-9b8ff5d3e84e e8af9c7a89379e5d98b92dec61e017cd {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02713.WGS.N.hg38 C3N-02713 HNSCC WGS blood_normal CPT0190950002 5561cc3f-6eba-4606-b11d-cf50a92930ca_wgs_gdc_realn.bam 81139399667 BAM harmonized CPTAC3 a1e33b48-f7a4-4841-bf1f-33499361accb 8cfe943600947c3e989450c7d004468e {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02713.WGS.T C3N-02713 HNSCC WGS tumor CPT0190850006 CPT0190850006.WholeGenome.RP-1303.bam 62672059516 BAM submitted_aligned CPTAC3 1f48d9a4-33f0-420c-baf8-553c9b134d9b f676c9864342ab8efe3e10d0f8ff046c {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.WGS.T.hg38 C3N-02713 HNSCC WGS tumor CPT0190850006 42aa457e-57fb-4a1b-8b9b-545a68b276ea_wgs_gdc_realn.bam 91118412291 BAM harmonized CPTAC3 274fd40b-741f-4dbf-b38e-cef21dc54e1a 2341f4bab0a3b09d894b8dddcbe0144a {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.WXS.A C3N-02713 HNSCC WXS tissue_normal CPT0190860009 CPT0190860009.WholeExome.RP-1303.bam 23706662329 BAM submitted_aligned CPTAC3 b54a6ef9-9013-4612-a855-13c1c9ae9962 6aa42af919b91038b6be0c3b9112f3e7 {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.WXS.A.hg38 C3N-02713 HNSCC WXS tissue_normal CPT0190860009 31f144ae-5db4-4343-8dd3-4c1ac587b8d8_wxs_gdc_realn.bam 33060654006 BAM harmonized CPTAC3 5a40157f-bc9f-4938-8dec-4b00946e9451 0b2fc362a993eabd4802eccfb2378d4d {"aliquot_tag": "ALQ_a3c9fcc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02713.WXS.N C3N-02713 HNSCC WXS blood_normal CPT0190950002 CPT0190950002.WholeExome.RP-1303.bam 29959572501 BAM submitted_aligned CPTAC3 dcced9cf-5a9f-4e0e-8b89-b15edfe96e49 153003203fa34ce86ed435c207fa8107 {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02713.WXS.N.hg38 C3N-02713 HNSCC WXS blood_normal CPT0190950002 5561cc3f-6eba-4606-b11d-cf50a92930ca_wxs_gdc_realn.bam 41026050013 BAM harmonized CPTAC3 7059f8f6-c62a-4f7b-80c5-eac4a9f710b2 b08f6b7212d98ce62904e3bb16593613 {"aliquot_tag": "ALQ_1112ef31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02713.WXS.T C3N-02713 HNSCC WXS tumor CPT0190850006 CPT0190850006.WholeExome.RP-1303.bam 26999941080 BAM submitted_aligned CPTAC3 72390380-c1ef-40d7-9764-21d8a170d137 3df8a8c51a83597f7ee1bc8b9816b656 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02713.WXS.T.hg38 C3N-02713 HNSCC WXS tumor CPT0190850006 42aa457e-57fb-4a1b-8b9b-545a68b276ea_wxs_gdc_realn.bam 36103410512 BAM harmonized CPTAC3 172a8ef7-760a-40c3-80dd-70b2c003267d 4ce22e9add880614c46b558184956753 {"aliquot_tag": "ALQ_dd23f88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.MethArray.Green.A C3N-02714 HNSCC Methylation_Array tissue_normal CPT0177220006 203271740111_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a358550e-817c-4ebd-abb7-2cf4a517e025 47943aee4e8eb1c3c3422df892239b56 {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.MethArray.Green.T C3N-02714 HNSCC Methylation_Array tumor CPT0177200006 203271750057_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 544e123d-9e66-4384-b8f2-4797301afd7c 728ead446f058adb0e93a512c73055c1 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.MethArray.Red.A C3N-02714 HNSCC Methylation_Array tissue_normal CPT0177220006 203271740111_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 3439e225-13f7-40d6-bddc-2eb0c3d4c943 0971627572b9e0de4f74855b4dadb89d {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.MethArray.Red.T C3N-02714 HNSCC Methylation_Array tumor CPT0177200006 203271750057_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 fbce5746-50e8-4570-8643-1040bf7bd673 7956b80793bdc6567865fde87013a2f8 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.miRNA-Seq.A.hg38 C3N-02714 HNSCC miRNA-Seq tissue_normal CPT0177220009 a2bedb17-1519-478a-a01c-7448307b712f_mirnaseq_gdc_realn.bam 229966140 BAM harmonized CPTAC3 7b32b2eb-6d96-4568-801a-2dd6059ec48e 97345f56430518355bb6336f643031f4 {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.miRNA-Seq.S45_L002_R1.A C3N-02714 HNSCC miRNA-Seq tissue_normal CPT0177220009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L002_R1_001.unaln.bam 206188258 BAM S45_L002_R1 submitted_unaligned CPTAC3 94ac019e-eff0-4f0c-8963-978145c2d3f4 61dee28804b2216776ecd5d4ade0ea8e {"aliquot_tag": "ALQ_8e0a36d6", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.miRNA-Seq.S8_L001_R1.T C3N-02714 HNSCC miRNA-Seq tumor CPT0177200009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L001_R1_001.unaln.bam 239924869 BAM S8_L001_R1 submitted_unaligned CPTAC3 8a614d85-2053-4e89-970a-e4b5dba1f459 672769b3ed9b9089c41558a146af6b56 {"aliquot_tag": "ALQ_f4ca65b6", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.miRNA-Seq.T.hg38 C3N-02714 HNSCC miRNA-Seq tumor CPT0177200009 4744e2d1-a1a0-4b50-8170-371a726eb6be_mirnaseq_gdc_realn.bam 268207775 BAM harmonized CPTAC3 e297eaed-0118-40fc-b8b8-cef3bffa0ac3 fbf8bc4a5116dccb03795e18f1108a11 {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.RNA-Seq.chimeric.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.chimeric.gdc_realn.bam 152572423 BAM chimeric harmonized CPTAC3 e2891fdc-591f-4d87-bab1-e6c9e12e1869 4225f48736435a331b6e5d42f773f3fb {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.RNA-Seq.chimeric.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.chimeric.gdc_realn.bam 105129677 BAM chimeric harmonized CPTAC3 1fa16e5b-6f37-4a60-990a-48f83267d3ae e8b82cb18e76a5849737f946770cdc0d {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.RNA-Seq.genomic.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.genomic.gdc_realn.bam 8998242915 BAM genomic harmonized CPTAC3 ef7c7a78-82f1-43b4-aa75-9ba44381e3d0 c729afc269715219822f12b8b319d99d {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.RNA-Seq.genomic.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.genomic.gdc_realn.bam 9264380541 BAM genomic harmonized CPTAC3 246adef1-d506-49ee-a894-f8db00eb3ca3 be129d490d8bf4d665afcadb93cf9a41 {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.RNA-Seq.S20_L004_R1.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R1_001.fastq.gz 4174878368 FASTQ S20_L004_R1 submitted_unaligned CPTAC3 e2a0a4ab-0008-45fa-b6eb-f972d5441ce3 095704cdd4d7c7b86cdfc19756012384 {"aliquot_tag": "ALQ_8e0a36d6", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.RNA-Seq.S20_L004_R2.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R2_001.fastq.gz 4652175260 FASTQ S20_L004_R2 submitted_unaligned CPTAC3 e9c4d1af-a0be-42ab-8900-64ff9b5e96f1 145047b686aa568c95ee0a08dbaf573f {"aliquot_tag": "ALQ_8e0a36d6", "sample": "S20", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.RNA-Seq.S7_L002_R1.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 4390081023 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 da47ac64-8561-4c91-a9df-284f46f3f992 00de404faef01427e97c31d5a0f29dba {"aliquot_tag": "ALQ_f4ca65b6", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.RNA-Seq.S7_L002_R2.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 4792391092 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 f0c394e3-0e19-4403-9368-66c2ab88ef5a f940118a1dbd40c4cdca27d9100609e9 {"aliquot_tag": "ALQ_f4ca65b6", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.RNA-Seq.transcriptome.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.transcriptome.gdc_realn.bam 12252038594 BAM transcriptome harmonized CPTAC3 ccea9044-f72b-48e6-ac4f-e32561dbdca2 cfdb4717c57714674eb368c69df34565 {"aliquot_tag": "ALQ_8e0a36d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.RNA-Seq.transcriptome.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.transcriptome.gdc_realn.bam 11907079148 BAM transcriptome harmonized CPTAC3 196ed2de-821b-40c4-8784-9e2f19c476c6 44866f4c3d88894c9e2e44d7e4b819f9 {"aliquot_tag": "ALQ_f4ca65b6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.WGS.N C3N-02714 HNSCC WGS blood_normal CPT0177310002 CPT0177310002.WholeGenome.RP-1303.bam 73162848881 BAM submitted_aligned CPTAC3 7d5cf71e-56b8-42b5-9ec3-c7b215d19275 b8ece1c2d604b30185075313569dd474 {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02714.WGS.N.hg38 C3N-02714 HNSCC WGS blood_normal CPT0177310002 4948ec26-0968-4423-9d77-9857cd193437_wgs_gdc_realn.bam 107123714772 BAM harmonized CPTAC3 bbab28a6-924b-473a-9db5-b3d410337242 db0a78e1ed75859bdcccd73636379b35 {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02714.WGS.T C3N-02714 HNSCC WGS tumor CPT0177200006 CPT0177200006.WholeGenome.RP-1303.bam 85976349954 BAM submitted_aligned CPTAC3 b896e6d7-6790-4e95-b067-b0546504cdab f9369044ee15d18cd040a1f7730f004a {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.WGS.T.hg38 C3N-02714 HNSCC WGS tumor CPT0177200006 915456b8-74cf-4951-b705-d7f887227032_wgs_gdc_realn.bam 126595025915 BAM harmonized CPTAC3 da8e51e6-7b8a-40e6-afd3-ab0e77650aa3 61909f8f1def75544675bed064a55010 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.WXS.A C3N-02714 HNSCC WXS tissue_normal CPT0177220006 CPT0177220006.WholeExome.RP-1303.bam 43630257952 BAM submitted_aligned CPTAC3 b027a7e7-1fa6-4780-a67b-a544e7601d4d 827d233154e1d5f887d311b0b65823b3 {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.WXS.A.hg38 C3N-02714 HNSCC WXS tissue_normal CPT0177220006 74a6e613-c977-464b-89f9-7acf4fab494f_wxs_gdc_realn.bam 59975981088 BAM harmonized CPTAC3 3b7b0eb1-948f-4cc8-adcd-d75ee58ac6a0 46501d6d6b4582235b6f55b9607d1132 {"aliquot_tag": "ALQ_1eb52b47", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02714.WXS.N C3N-02714 HNSCC WXS blood_normal CPT0177310002 CPT0177310002.WholeExome.RP-1303.bam 31651064803 BAM submitted_aligned CPTAC3 80a5b10d-519c-4fdf-a7cf-b4a664795c00 a4e6845e7c0198e5c6a943c9891ac82a {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02714.WXS.N.hg38 C3N-02714 HNSCC WXS blood_normal CPT0177310002 4948ec26-0968-4423-9d77-9857cd193437_wxs_gdc_realn.bam 43579386620 BAM harmonized CPTAC3 60036501-5c3f-425f-b353-a64cc8be71e7 0d655be56eaa02df6741026bbbe29abe {"aliquot_tag": "ALQ_9524462b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02714.WXS.T C3N-02714 HNSCC WXS tumor CPT0177200006 CPT0177200006.WholeExome.RP-1303.bam 22081320218 BAM submitted_aligned CPTAC3 2c80cf32-115f-48cd-823d-a768dd8e9c35 90ca8a499ee367c215a72b2e27eb1d39 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02714.WXS.T.hg38 C3N-02714 HNSCC WXS tumor CPT0177200006 915456b8-74cf-4951-b705-d7f887227032_wxs_gdc_realn.bam 30594064184 BAM harmonized CPTAC3 bc1cb5e0-e744-4194-8c5f-6b30d719e3ed 06a38d43f92ecda286207094b7965132 {"aliquot_tag": "ALQ_64757827", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.MethArray.Green.A C3N-02715 LUAD Methylation_Array tissue_normal CPT0178450006 203219760065_R06C01_Grn.idat 13676230 IDAT Green NA CPTAC3 8228af4d-909e-46c9-aaa1-8aeff2765e3e 55375a42a27d412e5759727fdfe8f3f7 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.MethArray.Green.T C3N-02715 LUAD Methylation_Array tumor CPT0178430006 203219650202_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 02380527-29d1-42f5-ac52-ae76837b9f60 8e3e36884dd3b3ab0675e8990d42a576 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.MethArray.Red.A C3N-02715 LUAD Methylation_Array tissue_normal CPT0178450006 203219760065_R06C01_Red.idat 13676230 IDAT Red NA CPTAC3 3d8fcee7-2dfd-425f-956e-16263c410b09 127cd8eb8229e97d85fc70ca32c31602 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.MethArray.Red.T C3N-02715 LUAD Methylation_Array tumor CPT0178430006 203219650202_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 49e0e185-ad36-4173-83c0-165be1ba35fa 40f8cf4e552b36bf8148218fffcdeb31 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.miRNA-Seq.A.hg38 C3N-02715 LUAD miRNA-Seq tissue_normal CPT0178450009 aa0841a9-e26c-4612-a3d6-9c40b71a20fa_mirnaseq_gdc_realn.bam 282032028 BAM harmonized CPTAC3 c2204fcb-0337-4303-b338-c9c881f8e4b4 622cf6f7718ca88b0410e9a3a49629c9 {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.miRNA-Seq.S12_L008_R1.A C3N-02715 LUAD miRNA-Seq tissue_normal CPT0178450009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGCTAC_S12_L008_R1_001.unaln.bam 256724201 BAM S12_L008_R1 submitted_unaligned CPTAC3 62931108-f4c5-4ba9-b472-a8a411a661b9 3fdd27ba2ae34357c63781ba4d271d5b {"aliquot_tag": "ALQ_1c3b7932", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.miRNA-Seq.S42_L007_R1.T C3N-02715 LUAD miRNA-Seq tumor CPT0178430009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAATCG_S42_L007_R1_001.unaln.bam 232159614 BAM S42_L007_R1 submitted_unaligned CPTAC3 b076785d-01b2-44a7-86b1-ac739feeb87f 4649d745d64e13f42ff412294b1f3a62 {"aliquot_tag": "ALQ_937b8c92", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.miRNA-Seq.T.hg38 C3N-02715 LUAD miRNA-Seq tumor CPT0178430009 8b5541d7-75e0-4e94-b2d9-ca1a54038201_mirnaseq_gdc_realn.bam 252238038 BAM harmonized CPTAC3 5e750405-84de-4394-b096-8ccab9e4b9ae abef246e16055e3d32ce95b215185529 {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.RNA-Seq.chimeric.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.chimeric.gdc_realn.bam 584400367 BAM chimeric harmonized CPTAC3 bd8f1cd6-d2a6-49d5-a1ea-c91522fc4f91 1e943431ba4834ca63041ef13a300b14 {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.RNA-Seq.chimeric.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.chimeric.gdc_realn.bam 44691360 BAM chimeric harmonized CPTAC3 76dffca6-9815-4656-8fd0-02684eb20a6b 7dd629e7fc3d17b13159341e40db7526 {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.RNA-Seq.genomic.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.genomic.gdc_realn.bam 7644860746 BAM genomic harmonized CPTAC3 1cfdfbee-47f6-4619-b1cc-363f04fb84be 78916b1ab243d5aba86c93af46cbefba {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.RNA-Seq.genomic.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.genomic.gdc_realn.bam 8924830046 BAM genomic harmonized CPTAC3 2922d2c9-58f1-4113-b55b-fcdd81153ba0 0d66a540e716b61017641ee3a1ac41a2 {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.RNA-Seq.S12_L003_R1.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R1_001.fastq.gz 4060589069 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 99d5a6fe-cf39-4df4-8a01-a12c30e6a658 dbdd99fcdc486ff75e79f1aa9dff2c34 {"aliquot_tag": "ALQ_937b8c92", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.RNA-Seq.S12_L003_R2.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R2_001.fastq.gz 4075908359 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 9bd06bf2-e0b6-409b-a8ee-03d9537ce978 6f41fe3ab20df5f6aeab7f5bdd3e880d {"aliquot_tag": "ALQ_937b8c92", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.RNA-Seq.S1_L004_R1.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R1_001.fastq.gz 3325972702 FASTQ S1_L004_R1 submitted_unaligned CPTAC3 643a4cde-7533-4e16-bca2-fa6b9c96054d 163e88e3a070ebc865652bfd0c3f5ea8 {"aliquot_tag": "ALQ_1c3b7932", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.RNA-Seq.S1_L004_R2.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R2_001.fastq.gz 3796835263 FASTQ S1_L004_R2 submitted_unaligned CPTAC3 4099d089-2604-4093-9bed-ab6b922bc460 21702d95e85cf917fde7ce245deb4144 {"aliquot_tag": "ALQ_1c3b7932", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.RNA-Seq.transcriptome.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.transcriptome.gdc_realn.bam 7087001494 BAM transcriptome harmonized CPTAC3 34e1bb4d-a96f-47bc-a878-6c2b8147fd72 0e0b2c6f0faf167da4b7fe9e96bcf265 {"aliquot_tag": "ALQ_1c3b7932", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.RNA-Seq.transcriptome.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.transcriptome.gdc_realn.bam 9223332551 BAM transcriptome harmonized CPTAC3 de9fc16a-4fb8-4fef-afc1-773f8418103b bf300a2c4a052bb9759a14fdfc08baad {"aliquot_tag": "ALQ_937b8c92", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.WGS.N C3N-02715 LUAD WGS blood_normal CPT0178540002 CPT0178540002.WholeGenome.RP-1303.bam 116204569250 BAM submitted_aligned CPTAC3 8f10c6bc-98fc-40d0-bb67-3f6a2d64dbdc 54c2399692144983aada85aefac60c2f {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02715.WGS.N.hg38 C3N-02715 LUAD WGS blood_normal CPT0178540002 e594cc1c-e76d-45f7-a1bd-9dd1b5a32558_wgs_gdc_realn.bam 169182461756 BAM harmonized CPTAC3 0ece1d84-4e97-4569-bc09-1a6efe7eebbf 4b6af13bf72677d7109a44693a1436aa {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02715.WGS.T C3N-02715 LUAD WGS tumor CPT0178430006 CPT0178430006.WholeGenome.RP-1303.bam 121427432052 BAM submitted_aligned CPTAC3 82f02f22-9b44-4b08-9aef-ab8eacd750e7 6f5b27621952546dc1f941631da38ae6 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.WGS.T.hg38 C3N-02715 LUAD WGS tumor CPT0178430006 1139caf2-ecb2-4e8f-9796-762e38673aa1_wgs_gdc_realn.bam 173752413510 BAM harmonized CPTAC3 3227f777-71b0-47cf-b18b-095ddb303548 44b29224c532cda094eafbb8d58bf228 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.WXS.A C3N-02715 LUAD WXS tissue_normal CPT0178450006 CPT0178450006.WholeExome.RP-1303.bam 20077900611 BAM submitted_aligned CPTAC3 18a643dd-084e-42dc-a8c4-0536276d0551 b843c86307c05d51293d3c472fa20566 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.WXS.A.hg38 C3N-02715 LUAD WXS tissue_normal CPT0178450006 cf3c1875-38d0-472a-87fb-cd9420edaf6d_wxs_gdc_realn.bam 27939719204 BAM harmonized CPTAC3 9363a506-6e48-4dfc-aea9-1648e6630c22 89c7ae25ba7b0ef72994d698cef3fb27 {"aliquot_tag": "ALQ_8c8464a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02715.WXS.N C3N-02715 LUAD WXS blood_normal CPT0178540002 CPT0178540002.WholeExome.RP-1303.bam 24228837217 BAM submitted_aligned CPTAC3 fc0efa89-5dff-44fd-a8bc-208d71342131 7075c2fc56425d8aa09456fb54706b18 {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02715.WXS.N.hg38 C3N-02715 LUAD WXS blood_normal CPT0178540002 e594cc1c-e76d-45f7-a1bd-9dd1b5a32558_wxs_gdc_realn.bam 33149159779 BAM harmonized CPTAC3 365839ce-f25a-470c-ae78-31612e6eace8 b6a0324161442e285b08d192a8e8cd7b {"aliquot_tag": "ALQ_7dd55aaf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02715.WXS.T C3N-02715 LUAD WXS tumor CPT0178430006 CPT0178430006.WholeExome.RP-1303.bam 28633624386 BAM submitted_aligned CPTAC3 158f2d17-12a8-4f63-8f5f-ef587af15306 de5797bb5801b8c40660bcef40a78b54 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02715.WXS.T.hg38 C3N-02715 LUAD WXS tumor CPT0178430006 1139caf2-ecb2-4e8f-9796-762e38673aa1_wxs_gdc_realn.bam 39439801401 BAM harmonized CPTAC3 43c76bf8-c4f9-4626-8289-5d4053c2edc9 30138f35bb43761c9ae133c8d02f29b3 {"aliquot_tag": "ALQ_3c49103", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.MethArray.Green.T C3N-02716 HNSCC Methylation_Array tumor CPT0177390006 203281980258_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 87a09fd6-eda3-45c3-87c7-78478ecbdcfc f31f20db9204a012510852beedac265d {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.MethArray.Red.T C3N-02716 HNSCC Methylation_Array tumor CPT0177390006 203281980258_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 0194ec90-7fd1-4a46-b0e1-c769faa8ce6d 77d1475c1ca8a48c511c7b647047c43f {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.miRNA-Seq.S9_L001_R1.T C3N-02716 HNSCC miRNA-Seq tumor CPT0177390009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L001_R1_001.unaln.bam 214089735 BAM S9_L001_R1 submitted_unaligned CPTAC3 b48518d2-4f00-423c-8e34-41d76b99e39d b584b68ae39dbd65e7bed3964ab9f1e3 {"aliquot_tag": "ALQ_3286d462", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.miRNA-Seq.T.hg38 C3N-02716 HNSCC miRNA-Seq tumor CPT0177390009 d624b662-0c8b-46ab-9648-30e6e55c6bfb_mirnaseq_gdc_realn.bam 246357862 BAM harmonized CPTAC3 dc5e121b-412b-4c5d-9348-d01ae77f77d5 6d013493d7ee5bf6b200d9347ba2b401 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.chimeric.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.chimeric.gdc_realn.bam 204715848 BAM chimeric harmonized CPTAC3 8cffda36-8d58-4f14-bf5f-3061c8efb967 c1e3c2688c6d6f46a653852528921479 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.chimeric.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.chimeric.gdc_realn.bam 138529077 BAM chimeric harmonized CPTAC3 b1662126-af39-441a-acf9-537a731e1cb0 402098802f0399908859198681a813ba {"aliquot_tag": "ALQ_4f936cb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.genomic.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.genomic.gdc_realn.bam 8524850451 BAM genomic harmonized CPTAC3 f0e6875c-bda1-433c-9f18-a838ad14ad5d addd04bca295cd65765dc2131ea4bd06 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.genomic.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.genomic.gdc_realn.bam 8205917103 BAM genomic harmonized CPTAC3 540fbebe-d5be-4edb-a18f-6c21cd53d715 8e894d89e5fcdeb82682b7a05d336212 {"aliquot_tag": "ALQ_4f936cb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.S89_R1.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R1_001.fastq.gz 4776207004 FASTQ S89_R1 submitted_unaligned CPTAC3 2d1364f2-e2c9-467f-bd2c-bff4e854418f 41d232321624ac6d76cddfcd5b7289bf {"aliquot_tag": "ALQ_4f936cb8", "sample": "S89", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.S89_R2.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R2_001.fastq.gz 4881239176 FASTQ S89_R2 submitted_unaligned CPTAC3 89a90b50-c8c5-4a39-88ae-d6821f0d0a1b fac1b90f26df5b7f1803132c5f409cdb {"aliquot_tag": "ALQ_4f936cb8", "sample": "S89", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.S9_L003_R1.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3966501182 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 f055f99e-1633-4ffe-b32e-967bdf12f93d 3291fd0949590c882e45082954ff4d6c {"aliquot_tag": "ALQ_3286d462", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.S9_L003_R2.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R2_001.fastq.gz 4322871554 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 49406ea3-f42e-4737-b584-1d03567cf44e 33a0c7384d3f4c197bf70ae991185689 {"aliquot_tag": "ALQ_3286d462", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.transcriptome.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.transcriptome.gdc_realn.bam 10858584491 BAM transcriptome harmonized CPTAC3 3c06402f-d668-4671-b9ac-f73954fcc700 c625f10d1144b5bfa770bc28d7ebe3f4 {"aliquot_tag": "ALQ_3286d462", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.RNA-Seq.transcriptome.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.transcriptome.gdc_realn.bam 5629009216 BAM transcriptome harmonized CPTAC3 4a6e37c9-8e5d-48de-95b7-836bbf30cd62 f3504e8067fc8177a936b8124299df7d {"aliquot_tag": "ALQ_4f936cb8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.WGS.N C3N-02716 HNSCC WGS blood_normal CPT0177460002 CPT0177460002.WholeGenome.RP-1303.bam 54711236571 BAM submitted_aligned CPTAC3 389002d0-a472-4211-877a-ac06ee93287b 45d9034ef70f3e1b305c8ec5634f65bf {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02716.WGS.N.hg38 C3N-02716 HNSCC WGS blood_normal CPT0177460002 bde91dec-8d07-4ee3-99b4-6971f804db5c_wgs_gdc_realn.bam 79666208867 BAM harmonized CPTAC3 f9d79874-b399-49ef-baf0-814d2e91992b 8cf2fbdee2b8c44fcb470b312e18a3fc {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02716.WGS.T C3N-02716 HNSCC WGS tumor CPT0177390006 CPT0177390006.WholeGenome.RP-1303.bam 61396402040 BAM submitted_aligned CPTAC3 9d114635-b2f9-48d7-8788-9fad9f6c507f f9c019740ecb074d6ba13f386b01ed5d {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.WGS.T.hg38 C3N-02716 HNSCC WGS tumor CPT0177390006 ce0bdb88-35de-4d0b-8327-7432e177c9af_wgs_gdc_realn.bam 90658341348 BAM harmonized CPTAC3 c0d58649-4a94-4552-90ef-6301b1e7ad0d a9a55ed56cb1842bd75dd0e5e286dfdd {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.WXS.N C3N-02716 HNSCC WXS blood_normal CPT0177460002 CPT0177460002.WholeExome.RP-1303.bam 31465866202 BAM submitted_aligned CPTAC3 85f7c4ca-d5b7-4fff-9bb2-e267d2ed67f5 79f4c9ecdfce3bc470077fc3f40d4f08 {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02716.WXS.N.hg38 C3N-02716 HNSCC WXS blood_normal CPT0177460002 bde91dec-8d07-4ee3-99b4-6971f804db5c_wxs_gdc_realn.bam 44822495761 BAM harmonized CPTAC3 836ef24f-275a-49d5-b56e-cbf6b37d6d62 00b83bbd2eff2f855328f98ff47f1fa2 {"aliquot_tag": "ALQ_3a01aa83", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02716.WXS.T C3N-02716 HNSCC WXS tumor CPT0177390006 CPT0177390006.WholeExome.RP-1303.bam 22602338856 BAM submitted_aligned CPTAC3 11b98d7a-f1e1-4460-bde1-eadb0927264b d21e8172c083dac285bf41fc11cae87d {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02716.WXS.T.hg38 C3N-02716 HNSCC WXS tumor CPT0177390006 ce0bdb88-35de-4d0b-8327-7432e177c9af_wxs_gdc_realn.bam 32000977577 BAM harmonized CPTAC3 bfdc1d84-4e38-45f9-b874-5964e2f89158 20a54d7f9cc71e9a8e65d714b232ad1c {"aliquot_tag": "ALQ_a239c9f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.MethArray.Green.A C3N-02718 LUAD Methylation_Array tissue_normal CPT0178630005 203219650169_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ef547a00-84af-424c-baab-03b1e77de597 949f29b400bb3b14a4c1708bba61d8e9 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.MethArray.Green.T C3N-02718 LUAD Methylation_Array tumor CPT0178620006 203219670217_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 61886176-a3eb-4cba-ad62-6e015222eb58 258b720976d18793e295f72953eecb06 {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.MethArray.Red.A C3N-02718 LUAD Methylation_Array tissue_normal CPT0178630005 203219650169_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 b7af7c63-cef2-4b9e-8838-c37205d65a69 5c1562be75c882a50b692a1639dc4c82 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.MethArray.Red.T C3N-02718 LUAD Methylation_Array tumor CPT0178620006 203219670217_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 d955cb7b-81bc-4b88-b684-27badaed3b19 0c385ca755643421bd155493ecf0d64b {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.miRNA-Seq.A.hg38 C3N-02718 LUAD miRNA-Seq tissue_normal CPT0178630008 d17bb5b6-8ec1-4d90-a8bd-46cc5b8284d0_mirnaseq_gdc_realn.bam 274779961 BAM harmonized CPTAC3 48d16276-6552-4b3f-bd9e-baa289bdf69c 56db28af56f55c9c612495548764081c {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.miRNA-Seq.S13_L008_R1.A C3N-02718 LUAD miRNA-Seq tissue_normal CPT0178630008 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L008_R1_001.unaln.bam 254268536 BAM S13_L008_R1 submitted_unaligned CPTAC3 63798002-dc79-4e04-94a5-ad67560967ea 04d81d3c5ddcb03031ab08fae9af63e0 {"aliquot_tag": "ALQ_a9b41d0f", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.miRNA-Seq.S43_L007_R1.T C3N-02718 LUAD miRNA-Seq tumor CPT0178620009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L007_R1_001.unaln.bam 170289195 BAM S43_L007_R1 submitted_unaligned CPTAC3 5d31f8de-663f-42d6-a417-53e92a65403c f18f0078ce93b292b453fde2fe31659c {"aliquot_tag": "ALQ_e3d30429", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.miRNA-Seq.T.hg38 C3N-02718 LUAD miRNA-Seq tumor CPT0178620009 381b34f3-b3b3-46a1-9a2f-ee9e520795a5_mirnaseq_gdc_realn.bam 186840577 BAM harmonized CPTAC3 51e80c0f-7cbf-4a13-bdad-e238e1808f1c fbff89d2997c64dceeedd423b3bbd3a0 {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.RNA-Seq.chimeric.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.chimeric.gdc_realn.bam 344886195 BAM chimeric harmonized CPTAC3 2b172b4e-6425-4569-aa92-baf7e7661e50 2f330d9d349e07d52c7cc61f0d1aaada {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.RNA-Seq.chimeric.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.chimeric.gdc_realn.bam 55944335 BAM chimeric harmonized CPTAC3 c4064db0-7606-4a5d-95ca-1d995484b42a 55ce409741871e69efaad8e9f31aebbc {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.RNA-Seq.genomic.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.genomic.gdc_realn.bam 7588693603 BAM genomic harmonized CPTAC3 d1be54ae-968a-4176-8c5d-3f5c3d1aeefc f971f4ec71c84799e02eb9009177bed8 {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.RNA-Seq.genomic.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.genomic.gdc_realn.bam 10925758073 BAM genomic harmonized CPTAC3 0549236e-c8a6-492f-be72-b24281d87ca0 326b0ede08e9bdb1716c91e078cbd3bb {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.RNA-Seq.S7_L002_R1.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 4237221425 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 1a459018-a847-4dc6-b916-d26873443a99 041570c614f59118eb7368a5cab5af58 {"aliquot_tag": "ALQ_e3d30429", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.RNA-Seq.S7_L002_R2.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 4592649349 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 e7b10c68-31e0-42ed-8e2d-39816e24c52a d85c5fdfcfd264de5449b150fa92f939 {"aliquot_tag": "ALQ_e3d30429", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.RNA-Seq.S9_L003_R1.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R1_001.fastq.gz 3216831020 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 014c4884-0a7c-499f-b4ea-85745d438e4f 0cd60a55dc2393bddb65ae4ed281a8c4 {"aliquot_tag": "ALQ_a9b41d0f", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.RNA-Seq.S9_L003_R2.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R2_001.fastq.gz 3574959410 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 3128bf1d-a5e2-4d72-a542-22c503956735 aba1cb94f9739a9333a0eee10adaf09c {"aliquot_tag": "ALQ_a9b41d0f", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.RNA-Seq.transcriptome.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.transcriptome.gdc_realn.bam 8212400513 BAM transcriptome harmonized CPTAC3 faf57426-8f30-4fcd-b8ee-aa27610ac48f 0326d1d60a88dcb4c3a9c1190b465c00 {"aliquot_tag": "ALQ_a9b41d0f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.RNA-Seq.transcriptome.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.transcriptome.gdc_realn.bam 9455351118 BAM transcriptome harmonized CPTAC3 ee16fa09-219c-4bc5-956b-75ddf42aaa03 e1250b2030b576d38b279feae5296fa1 {"aliquot_tag": "ALQ_e3d30429", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.WGS.N C3N-02718 LUAD WGS blood_normal CPT0178720002 CPT0178720002.WholeGenome.RP-1303.bam 116130482592 BAM submitted_aligned CPTAC3 58fe3455-3fa9-4cf4-adb6-7fb4237b4b9e 26fefc4eeb98dce7abdb2e4e0003a291 {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02718.WGS.N.hg38 C3N-02718 LUAD WGS blood_normal CPT0178720002 67b74651-4a43-4632-964a-dac9ca7fecd2_wgs_gdc_realn.bam 167722313865 BAM harmonized CPTAC3 9753c811-ad70-4d6e-8c2b-602ce8e18725 02270a16e40e8f226683a4784df10451 {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02718.WGS.T C3N-02718 LUAD WGS tumor CPT0178620006 CPT0178620006.WholeGenome.RP-1303.bam 49544054043 BAM submitted_aligned CPTAC3 7cf9ed95-39a5-4f64-87b9-d82cceef7754 08d6e0f8e8fd9f45f514e85a4e40ca1a {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.WGS.T.hg38 C3N-02718 LUAD WGS tumor CPT0178620006 36d00243-468f-4037-a80b-cc631ea7681c_wgs_gdc_realn.bam 72375071347 BAM harmonized CPTAC3 511b4186-4b0a-4cfc-a049-11211066389f a64b1d4aa8d5e0d9e5e293e9d6c832b2 {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.WXS.A C3N-02718 LUAD WXS tissue_normal CPT0178630005 CPT0178630005.WholeExome.RP-1303.bam 27633228090 BAM submitted_aligned CPTAC3 4c7e4dd1-59ee-4b0e-89b0-6d3cf784fd21 324f956d4b60c6ab764132dc19512530 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.WXS.A.hg38 C3N-02718 LUAD WXS tissue_normal CPT0178630005 83401ac2-b5bf-4edf-882c-baabb75ab924_wxs_gdc_realn.bam 37575217093 BAM harmonized CPTAC3 439aba6a-78ac-4392-b8de-645f15c8f448 ae643fdefbc05cd1d024b15baae8f835 {"aliquot_tag": "ALQ_d70561b2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02718.WXS.N C3N-02718 LUAD WXS blood_normal CPT0178720002 CPT0178720002.WholeExome.RP-1303.bam 24470757421 BAM submitted_aligned CPTAC3 fcc2f80a-9b92-4eb0-b048-eb87e6767c51 a1b19dbcfca877c6cdccdbc8a48cc98c {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02718.WXS.N.hg38 C3N-02718 LUAD WXS blood_normal CPT0178720002 67b74651-4a43-4632-964a-dac9ca7fecd2_wxs_gdc_realn.bam 33750878611 BAM harmonized CPTAC3 86c0d1c0-70da-4141-a527-e78ca49000d3 b260af6d7d4760e3c53596cc2fc93fa7 {"aliquot_tag": "ALQ_bf5d0e04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02718.WXS.T C3N-02718 LUAD WXS tumor CPT0178620006 CPT0178620006.WholeExome.RP-1303.bam 31724634905 BAM submitted_aligned CPTAC3 1f25069f-bc2c-457a-b258-b2f71dab05fe 6c98a655cc3a284a220c18fc982eed2e {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02718.WXS.T.hg38 C3N-02718 LUAD WXS tumor CPT0178620006 36d00243-468f-4037-a80b-cc631ea7681c_wxs_gdc_realn.bam 44458150172 BAM harmonized CPTAC3 8c2c9bfc-8fb9-4791-bf8f-41792fbd3b98 6bec4bf67a940a0b51b8320161cb801e {"aliquot_tag": "ALQ_736c19b8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.MethArray.Green.A C3N-02721 LUAD Methylation_Array tissue_normal CPT0178810006 203219650157_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 418bb0c3-b523-4710-91a6-8266e4d96aae 4f132c79d6dde17c420827ee9582fa87 {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.MethArray.Green.T C3N-02721 LUAD Methylation_Array tumor CPT0178800006 203219640172_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 794867dc-c9b7-4232-ae9d-714373086e6e c9799d28036316d83aa591f70a558de1 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.MethArray.Red.A C3N-02721 LUAD Methylation_Array tissue_normal CPT0178810006 203219650157_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 e365b4b1-f183-4491-819f-786725461c97 7dcde1d59f92fd4ae807c6546c1a803e {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.MethArray.Red.T C3N-02721 LUAD Methylation_Array tumor CPT0178800006 203219640172_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 09788a0d-1383-4756-91a7-c0a4bae06042 e40bed4038bc271389259bccbe1cb5a5 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.miRNA-Seq.A.hg38 C3N-02721 LUAD miRNA-Seq tissue_normal CPT0178810009 4bfdf094-a8e1-44af-ac38-5230c67ab2d7_mirnaseq_gdc_realn.bam 246845314 BAM harmonized CPTAC3 258ee08a-0d35-4e35-8698-5fa5bd456fd9 f9797062193c932bbeecbc62e5de23f7 {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.miRNA-Seq.S14_L008_R1.A C3N-02721 LUAD miRNA-Seq tissue_normal CPT0178810009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L008_R1_001.unaln.bam 226270796 BAM S14_L008_R1 submitted_unaligned CPTAC3 63872e94-bec7-456f-953f-6c034278bc40 fd12794f34a4a32d28f66e6fe7195fb2 {"aliquot_tag": "ALQ_9e791f89", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.miRNA-Seq.S1_L006_R1.T C3N-02721 LUAD miRNA-Seq tumor CPT0178800009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L006_R1_001.unaln.bam 203477465 BAM S1_L006_R1 submitted_unaligned CPTAC3 496e9b03-4613-44d9-843e-b20224b8e9c9 3b0642f3eba0a743f81238e0604e884f {"aliquot_tag": "ALQ_a3193639", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.miRNA-Seq.T.hg38 C3N-02721 LUAD miRNA-Seq tumor CPT0178800009 6bc47314-a931-47a1-97b6-90375dc7d2f4_mirnaseq_gdc_realn.bam 224550621 BAM harmonized CPTAC3 a1cd6004-8d70-4834-a198-736f37c7def0 743c132a8d1d1785e3f931d0fc5371ac {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.RNA-Seq.chimeric.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.chimeric.gdc_realn.bam 393912738 BAM chimeric harmonized CPTAC3 5bd208d1-65ea-4d0d-8400-1f468c69c29c f69aba9850b66c8dd5dbc3797a1e412e {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.RNA-Seq.chimeric.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.chimeric.gdc_realn.bam 46098537 BAM chimeric harmonized CPTAC3 83ecf2ea-a43b-431e-99a8-d2064cbaa29d 145897c74c5367310a4f989bd639b8ee {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.RNA-Seq.genomic.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.genomic.gdc_realn.bam 7505596406 BAM genomic harmonized CPTAC3 388f4f96-99fd-4fcc-aa9d-02b94a5af9d6 162f45bad4992e4778b8c2578e8beced {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.RNA-Seq.genomic.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.genomic.gdc_realn.bam 9209293091 BAM genomic harmonized CPTAC3 0e777352-a175-49e8-90d5-99b25edfd55f 1d004e18c36a0cbc03a504f893522672 {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.RNA-Seq.S23_L007_R1.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R1_001.fastq.gz 3963700474 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 8f5345f6-e100-4e0e-bdb2-39ac6d75cd1c 93db658b5cf591a0be47452ad3d60800 {"aliquot_tag": "ALQ_a3193639", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.RNA-Seq.S23_L007_R2.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R2_001.fastq.gz 4494736949 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 0125e60b-4a2c-4158-943c-2bed5fce13e4 623ca1ae2529300955549027ebcfa30c {"aliquot_tag": "ALQ_a3193639", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.RNA-Seq.S5_L002_R1.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3311038609 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 3c56248a-08ae-4460-8f93-ce4fd74e3406 5c51dd3d75b5bf612a2ec906b0407e10 {"aliquot_tag": "ALQ_9e791f89", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.RNA-Seq.S5_L002_R2.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3569820931 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 5eac8375-120f-4fb9-9caf-1e4ecbbc075d ce7f17d5dcf91ba178a15cff01b4e4d0 {"aliquot_tag": "ALQ_9e791f89", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.RNA-Seq.transcriptome.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.transcriptome.gdc_realn.bam 7446941841 BAM transcriptome harmonized CPTAC3 5afa0f58-2fc5-4586-8395-632ce50d740b a04f31d32eb76825a2c51e7759d3541c {"aliquot_tag": "ALQ_9e791f89", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.RNA-Seq.transcriptome.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.transcriptome.gdc_realn.bam 10730157312 BAM transcriptome harmonized CPTAC3 4f1957e3-5166-4604-8884-4b9aef3a1a3c 9286728037d354f98bdca4e4988b5fbc {"aliquot_tag": "ALQ_a3193639", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.WGS.N C3N-02721 LUAD WGS blood_normal CPT0178900002 CPT0178900002.WholeGenome.RP-1303.bam 116495578059 BAM submitted_aligned CPTAC3 25b6180e-7ffd-48be-b421-35a0ad5eabc1 29e50a8c1815bff19a95c2858a96c6b5 {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02721.WGS.N.hg38 C3N-02721 LUAD WGS blood_normal CPT0178900002 e5ed6752-7079-41f8-9fd3-2925e8c90155_wgs_gdc_realn.bam 168281135953 BAM harmonized CPTAC3 9b4f943d-df31-4af6-8440-8c050e224e61 41930ffe63a9897e306964ff04103c06 {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02721.WGS.T C3N-02721 LUAD WGS tumor CPT0178800006 CPT0178800006.WholeGenome.RP-1303.bam 86979596607 BAM submitted_aligned CPTAC3 868c6210-0711-40c0-b4a6-e3c7fa63d4bb ec28664cf0f64ad2be5e92a23b950f48 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.WGS.T.hg38 C3N-02721 LUAD WGS tumor CPT0178800006 37a6854f-dcb9-4ebc-a765-b4e0d8e46f0c_wgs_gdc_realn.bam 124813671673 BAM harmonized CPTAC3 326da9b8-0686-4d92-86a7-8622e7ee88ef 3c96644dd39fa47865412bf809c67fa5 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.WXS.A C3N-02721 LUAD WXS tissue_normal CPT0178810006 CPT0178810006.WholeExome.RP-1303.bam 44209407950 BAM submitted_aligned CPTAC3 d0e5b987-2c66-4b4b-8c62-398d61de65bb 11524829f767f2880304c4536158b8a9 {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.WXS.A.hg38 C3N-02721 LUAD WXS tissue_normal CPT0178810006 baf59367-f45c-4c75-8051-098670a5fd5e_wxs_gdc_realn.bam 60421908294 BAM harmonized CPTAC3 9ab83a38-6cdc-4e06-b75a-f732c163e5a1 9da9b669ddec77731e478f5ef6933afa {"aliquot_tag": "ALQ_ec60218", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02721.WXS.N C3N-02721 LUAD WXS blood_normal CPT0178900002 CPT0178900002.WholeExome.RP-1303.bam 33160677383 BAM submitted_aligned CPTAC3 98eae1cf-d4d0-406b-8c4b-91bc9126ba64 ccd9124b3c7f7ee933a2ec778e5ed94a {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02721.WXS.N.hg38 C3N-02721 LUAD WXS blood_normal CPT0178900002 e5ed6752-7079-41f8-9fd3-2925e8c90155_wxs_gdc_realn.bam 44776929421 BAM harmonized CPTAC3 885ee210-8b91-479a-ac14-c134d7954134 ae1a2c09b0392895a121dbd040663695 {"aliquot_tag": "ALQ_ff973c14", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02721.WXS.T C3N-02721 LUAD WXS tumor CPT0178800006 CPT0178800006.WholeExome.RP-1303.bam 21466879640 BAM submitted_aligned CPTAC3 92383eef-2a3f-4d3d-850b-91c2a3b1eceb 8b6fe9977cdc86f8e43670f8bc72eae4 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02721.WXS.T.hg38 C3N-02721 LUAD WXS tumor CPT0178800006 37a6854f-dcb9-4ebc-a765-b4e0d8e46f0c_wxs_gdc_realn.bam 29385537180 BAM harmonized CPTAC3 8768f992-d681-4acf-b6cf-e13554618075 2f1cbacec1c83347e42dbc8b8779c9f4 {"aliquot_tag": "ALQ_33a62ba8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.MethArray.Green.A C3N-02723 CCRCC Methylation_Array tissue_normal CPT0176250006 204930640064_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4f423cc1-4131-4814-9acd-0d440088c302 e60ab0acf24e9b72bcfccc335bbc23ce {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.MethArray.Green.T C3N-02723 CCRCC Methylation_Array tumor CPT0176220006 203219640160_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 af6a3af6-c28b-4068-9c49-ab2e88b994c8 24883077d15979102e5b9fc243132285 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.MethArray.Red.A C3N-02723 CCRCC Methylation_Array tissue_normal CPT0176250006 204930640064_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 e1f7e003-3ddd-4d5f-9dbd-336ee1e60bc8 37b3233b6253eeb3cf6468588dcd47bc {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.MethArray.Red.T C3N-02723 CCRCC Methylation_Array tumor CPT0176220006 203219640160_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 b1b3b7ba-db73-4739-a75f-2c2f6df5115a 6ec9442254c7cd6e39c10c1de9851ce7 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.miRNA-Seq.A.hg38 C3N-02723 CCRCC miRNA-Seq tissue_normal CPT0176250009 3bfd6572-f631-4dbb-8aac-d971b77f0435_mirnaseq_gdc_realn.bam 189341343 BAM harmonized CPTAC3 bdc0a79e-4cb1-4cd3-80e4-93cd19820f84 4b16b45a17cf49a819e034833d01efeb {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.miRNA-Seq.S29_L005_R1.T C3N-02723 CCRCC miRNA-Seq tumor CPT0176220009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L005_R1_001.unaln.bam 210180146 BAM S29_L005_R1 submitted_unaligned CPTAC3 e00b4c98-cf47-4216-8c78-319a49de4b26 6c83f27236356f0c0a20439f39873fbc {"aliquot_tag": "ALQ_287d3d62", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.miRNA-Seq.S47_L005_R1.A C3N-02723 CCRCC miRNA-Seq tissue_normal CPT0176250009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGAAG_S47_L005_R1_001.unaln.bam 171291216 BAM S47_L005_R1 submitted_unaligned CPTAC3 fdacb0c5-c1fd-4348-864d-4cabd31902f7 fde93d213ebdaf055650fde3b1308737 {"aliquot_tag": "ALQ_9a5de172", "sample": "S47", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.miRNA-Seq.T.hg38 C3N-02723 CCRCC miRNA-Seq tumor CPT0176220009 987b69b7-1756-4c38-bf0f-48fb18af13de_mirnaseq_gdc_realn.bam 230806862 BAM harmonized CPTAC3 80d5beac-df81-4f9b-9fac-8dc94e7f7e7a 9665a16a2ae6e61df69c50bda735d362 {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.RNA-Seq.chimeric.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.chimeric.gdc_realn.bam 27745852 BAM chimeric harmonized CPTAC3 f22007fc-e8a6-4be0-8494-6c416992fc53 d8d7b6eb037735fb950c13a8252e5ad5 {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.RNA-Seq.chimeric.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.chimeric.gdc_realn.bam 29444514 BAM chimeric harmonized CPTAC3 8e73ff22-2f89-45dd-bfee-6d964670cb16 1fc2b3738e3e57d4c91d0cc85c4199d9 {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.RNA-Seq.genomic.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.genomic.gdc_realn.bam 7915146947 BAM genomic harmonized CPTAC3 7912e017-d152-453e-919b-375ce58ce05f b763aa666df051eaf0f34bbc04be7084 {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.RNA-Seq.genomic.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.genomic.gdc_realn.bam 6921319908 BAM genomic harmonized CPTAC3 919d0cd5-1eb4-4d34-afad-b8ffee752773 ba0821869618f808bcec7ff0fa54b3df {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.RNA-Seq.S18_L005_R1.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3178612142 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 ad631a15-29ef-46cf-8097-83a519d38ca5 1f27db49e764aed9bae5dc10ba726a6d {"aliquot_tag": "ALQ_287d3d62", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.RNA-Seq.S18_L005_R2.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3316996449 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 5f293b5e-b90e-4059-938d-ea17328d3681 8bac6bf75547e802c30750898e6fbd45 {"aliquot_tag": "ALQ_287d3d62", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.RNA-Seq.S8_L002_R1.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R1_001.fastq.gz 3534084095 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 f256e9b6-50c3-4e92-9028-3f7c96ae79f2 8c72a8146e744d62f41ef9e6ce75cd9d {"aliquot_tag": "ALQ_9a5de172", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.RNA-Seq.S8_L002_R2.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R2_001.fastq.gz 3726325895 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 f8f97778-37d0-4c46-b29b-203e9b4bbd13 b5a58f1b4ea7b6d1483d1ea54d114873 {"aliquot_tag": "ALQ_9a5de172", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.RNA-Seq.transcriptome.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.transcriptome.gdc_realn.bam 8763341527 BAM transcriptome harmonized CPTAC3 6f33a502-196e-465d-aa18-e8eb615c3b49 4f34f21ad379379517f3311b6381f397 {"aliquot_tag": "ALQ_9a5de172", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.RNA-Seq.transcriptome.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.transcriptome.gdc_realn.bam 8640669824 BAM transcriptome harmonized CPTAC3 a3f34983-e22f-4a16-ab50-58fb4ee920e4 2821b1878bfebdcc8c67fa9989410863 {"aliquot_tag": "ALQ_287d3d62", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.WGS.N C3N-02723 CCRCC WGS blood_normal CPT0176340002 CPT0176340002.WholeGenome.RP-1303.bam 103654504012 BAM submitted_aligned CPTAC3 244c32cf-2a6a-4aef-a36f-b94e5e62a99a 9463390a4db73fb1d2b5b1e3f7a13a7e {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02723.WGS.N.hg38 C3N-02723 CCRCC WGS blood_normal CPT0176340002 f90c3f68-f919-476c-9f15-7347b79bb752_wgs_gdc_realn.bam 157477429627 BAM harmonized CPTAC3 0b99e49b-b94e-45ae-857c-48ac16d5734b 331bd446c8ec9895a41de916f742143f {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02723.WGS.T C3N-02723 CCRCC WGS tumor CPT0176220006 CPT0176220006.WholeGenome.RP-1303.bam 113149926041 BAM submitted_aligned CPTAC3 1981c5ff-8bd8-4492-aca9-d8cb9e139543 53de93cf80f16761dfb189cbe97738e3 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.WGS.T.hg38 C3N-02723 CCRCC WGS tumor CPT0176220006 d423e9e0-da02-4195-8016-a23646f1e6fb_wgs_gdc_realn.bam 164865140495 BAM harmonized CPTAC3 7719d119-d95d-497b-907e-4b0ba2ed8463 4e9982958b16be094f71229b8e5f77c2 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.WXS.A C3N-02723 CCRCC WXS tissue_normal CPT0176250006 CPT0176250006.WholeExome.RP-1303.bam 35315032285 BAM submitted_aligned CPTAC3 52de7901-070e-4e2b-a65a-df063e21d7e6 758601901e1d3aeb29b27163babe749f {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.WXS.A.hg38 C3N-02723 CCRCC WXS tissue_normal CPT0176250006 564a5c3d-8328-458b-a67e-3df1bd8ff0f5_wxs_gdc_realn.bam 49064477789 BAM harmonized CPTAC3 078e3055-2173-4d7e-8e34-a5938dba5a1a 0134d07645ebb24773cdd446a080edd3 {"aliquot_tag": "ALQ_ae2fce3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02723.WXS.N C3N-02723 CCRCC WXS blood_normal CPT0176340002 CPT0176340002.WholeExome.RP-1303.bam 24624261985 BAM submitted_aligned CPTAC3 800818e7-885b-4038-8b8c-b0cc20b8453d 9884b57165de1f8565f14017cdc3a1dc {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02723.WXS.N.hg38 C3N-02723 CCRCC WXS blood_normal CPT0176340002 f90c3f68-f919-476c-9f15-7347b79bb752_wxs_gdc_realn.bam 33790244501 BAM harmonized CPTAC3 3ffe5fa4-7d4b-4d24-b738-02fe1630c49a 8126a4c46528f85b266e8fe9d462dc9b {"aliquot_tag": "ALQ_fbb3c2ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02723.WXS.T C3N-02723 CCRCC WXS tumor CPT0176220006 CPT0176220006.WholeExome.RP-1303.bam 25926081401 BAM submitted_aligned CPTAC3 cc76abc3-e43d-4e42-a5b2-7021b87886c1 8f57a303afaf2266be968b44efc7be37 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02723.WXS.T.hg38 C3N-02723 CCRCC WXS tumor CPT0176220006 d423e9e0-da02-4195-8016-a23646f1e6fb_wxs_gdc_realn.bam 35353704938 BAM harmonized CPTAC3 bfd710b9-bc69-4ef9-9e3f-40f78fd10f50 26325e3f97069d950e34f62fb1dc9351 {"aliquot_tag": "ALQ_b8c220f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.MethArray.Green.A C3N-02726 CCRCC Methylation_Array tissue_normal CPT0176430006 204930640041_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cfb2ea19-40b7-4ef0-9879-759f65781331 5a3ff009a8b9ec8d49bbcb863f604080 {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.MethArray.Green.T C3N-02726 CCRCC Methylation_Array tumor CPT0176400006 203219650169_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 32045597-49c1-489c-a2e1-578021488988 ac6c145f9a6076e67889f62d247b2d3b {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.MethArray.Red.A C3N-02726 CCRCC Methylation_Array tissue_normal CPT0176430006 204930640041_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 e48f5037-2000-419d-b4d2-87ce1a53d383 b27409ab006d06094027d68e4a9442df {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.MethArray.Red.T C3N-02726 CCRCC Methylation_Array tumor CPT0176400006 203219650169_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e685984c-dbf6-43e8-b0c8-ab9ac2232448 5141fdb4507a2bf04e27f0328151f8a3 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.miRNA-Seq.A.hg38 C3N-02726 CCRCC miRNA-Seq tissue_normal CPT0176430009 a4ce68d9-c359-4c11-b417-16a4b5b93976_mirnaseq_gdc_realn.bam 248879703 BAM harmonized CPTAC3 fe75653c-010b-41c3-be4e-669eba7b2b6e c7f8cc6dc8ee040754f3ca9d114d6479 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.miRNA-Seq.S30_L005_R1.T C3N-02726 CCRCC miRNA-Seq tumor CPT0176400009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L005_R1_001.unaln.bam 251857307 BAM S30_L005_R1 submitted_unaligned CPTAC3 651ec5b1-2a3d-4244-bfe9-dddf7ed27331 36345ba54815c34c2c015a915aed5661 {"aliquot_tag": "ALQ_84e48d1f", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.miRNA-Seq.S48_L005_R1.A C3N-02726 CCRCC miRNA-Seq tissue_normal CPT0176430009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGGCA_S48_L005_R1_001.unaln.bam 227713011 BAM S48_L005_R1 submitted_unaligned CPTAC3 44d93ee1-2cad-411e-a34f-5fab5ec39cd2 e62fcd30f1343d7aeaab524677bc55cd {"aliquot_tag": "ALQ_c344f7cf", "sample": "S48", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.miRNA-Seq.T.hg38 C3N-02726 CCRCC miRNA-Seq tumor CPT0176400009 800c19e6-48cb-4f63-b375-cf0ef713795b_mirnaseq_gdc_realn.bam 278128275 BAM harmonized CPTAC3 2400d11e-f497-4681-b72c-211bf6828a58 75059b417e60ed929f73a8d4e6f5f6a8 {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.RNA-Seq.chimeric.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.chimeric.gdc_realn.bam 34912458 BAM chimeric harmonized CPTAC3 9abb83b3-224d-4e6a-9618-d3373be64669 6977762bde1c0ccde6992d21d5d3ae93 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.RNA-Seq.chimeric.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.chimeric.gdc_realn.bam 29262918 BAM chimeric harmonized CPTAC3 0ea49e56-f252-4309-89dc-02196946fe18 2570f2f41a80d9a47b580a1baf6f80cc {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.RNA-Seq.genomic.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.genomic.gdc_realn.bam 9620370516 BAM genomic harmonized CPTAC3 2d04ee51-94d8-4e0c-b17a-e81c2479a6ad 9e054acb65623209890b2a44aa438446 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.RNA-Seq.genomic.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.genomic.gdc_realn.bam 6052356723 BAM genomic harmonized CPTAC3 129a6639-d301-4565-809a-ed69d0deba4f 359c84d8000478ed5fc112c8ff45942a {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.RNA-Seq.S17_L005_R1.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2874892214 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 9f265f85-0ddc-4b43-8cb7-bb34b3c5d38a c03a2b8a737cf53dceb0e74e8087f2ca {"aliquot_tag": "ALQ_84e48d1f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.RNA-Seq.S17_L005_R2.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 3009425769 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 988289b1-78bb-4f8b-8a9f-7aeb9f48f04b e504c92e87fa622170426d94f36c9576 {"aliquot_tag": "ALQ_84e48d1f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.RNA-Seq.S7_L002_R1.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R1_001.fastq.gz 4407306906 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 13a1cfba-4d90-4fb7-888d-76e1686d23f6 29fe2c496d2ce1d64a8e5e3bc457d1a3 {"aliquot_tag": "ALQ_c344f7cf", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.RNA-Seq.S7_L002_R2.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R2_001.fastq.gz 4733610654 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 dfe3363a-8d70-4edb-8497-13655ec491b6 31ed55e930fd55946338d412dfde6291 {"aliquot_tag": "ALQ_c344f7cf", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.RNA-Seq.transcriptome.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.transcriptome.gdc_realn.bam 11323050005 BAM transcriptome harmonized CPTAC3 e0227ae9-7658-49db-9ae1-d4392232989f 3d5132bc4ac5d5e3b1f360f2bde301d1 {"aliquot_tag": "ALQ_c344f7cf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.RNA-Seq.transcriptome.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.transcriptome.gdc_realn.bam 7388711096 BAM transcriptome harmonized CPTAC3 75403d9b-0e21-4dce-b8a4-240bdc801063 2af9ac0953f92eb062d2632d029cd28a {"aliquot_tag": "ALQ_84e48d1f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.WGS.N C3N-02726 CCRCC WGS blood_normal CPT0176520002 CPT0176520002.WholeGenome.RP-1303.bam 52013834859 BAM submitted_aligned CPTAC3 120abf71-ed9a-4963-abc0-9e8eb02663ab e2a2792b4be9aee2cce10e78155723ae {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02726.WGS.N.hg38 C3N-02726 CCRCC WGS blood_normal CPT0176520002 686b4ba1-7506-4db8-b6dd-0596d99f6193_wgs_gdc_realn.bam 74975219505 BAM harmonized CPTAC3 958ba445-a554-433b-ade6-b30f4bb2298f bbb94aac8fe80b73d8e1fb55036ff367 {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02726.WGS.T C3N-02726 CCRCC WGS tumor CPT0176400006 CPT0176400006.WholeGenome.RP-1303.bam 108715168377 BAM submitted_aligned CPTAC3 e6f807c8-7747-40c7-9629-5d93b42aa102 aaeef6ffd817630354a087863d665bc6 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.WGS.T.hg38 C3N-02726 CCRCC WGS tumor CPT0176400006 fbb09331-d988-4569-b31a-20a539b963c3_wgs_gdc_realn.bam 157534681727 BAM harmonized CPTAC3 b8ce45e9-b777-49ed-8dca-19caf92a1419 cc6159b7792ba079adfe4d196f2d13cd {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.WXS.A C3N-02726 CCRCC WXS tissue_normal CPT0176430006 CPT0176430006.WholeExome.RP-1303.bam 22159262062 BAM submitted_aligned CPTAC3 8506881d-0b2a-475d-a2a1-bc49b8f63bc7 95e81be5b22cf0652df479646b56dfba {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.WXS.A.hg38 C3N-02726 CCRCC WXS tissue_normal CPT0176430006 3ff13b81-42cc-4e20-9923-a09b9b766dda_wxs_gdc_realn.bam 31503913230 BAM harmonized CPTAC3 ccafc43f-5a5a-4126-9e1e-0d01c02d9373 1bc4c5adabf8e28c1bc7c6c6f470bb9e {"aliquot_tag": "ALQ_53fbea5e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02726.WXS.N C3N-02726 CCRCC WXS blood_normal CPT0176520002 CPT0176520002.WholeExome.RP-1303.bam 25334023469 BAM submitted_aligned CPTAC3 4ee00e19-ea78-4ef1-bf57-af56f223af2d 73880ed466ffbd47857af0281011ab8d {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02726.WXS.N.hg38 C3N-02726 CCRCC WXS blood_normal CPT0176520002 686b4ba1-7506-4db8-b6dd-0596d99f6193_wxs_gdc_realn.bam 35276807706 BAM harmonized CPTAC3 a3092dfe-01b9-48a1-9864-ac18fd512e34 e997bed7eb58138eb3a66487693e8ebd {"aliquot_tag": "ALQ_a2aad452", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02726.WXS.T C3N-02726 CCRCC WXS tumor CPT0176400006 CPT0176400006.WholeExome.RP-1303.bam 21871332331 BAM submitted_aligned CPTAC3 3bfb8866-1440-4192-974d-b68826606f07 b10b41ffc196ca8a5470d8b18345bb97 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02726.WXS.T.hg38 C3N-02726 CCRCC WXS tumor CPT0176400006 fbb09331-d988-4569-b31a-20a539b963c3_wxs_gdc_realn.bam 30211959019 BAM harmonized CPTAC3 fc2f8339-8e74-45ba-b592-8cdcc7da458c 0c288be132a9e9ac02b62bbfdbc23678 {"aliquot_tag": "ALQ_145b908e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.miRNA-Seq.A.hg38 C3N-02727 HNSCC miRNA-Seq tissue_normal CPT0177730009 73c76f59-a12d-428e-bce5-535042996eff_mirnaseq_gdc_realn.bam 219795348 BAM harmonized CPTAC3 eefce99a-ccf4-4ce7-8a27-c63396fc027d 87aa8372c2036536c77910b12be58c71 {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.miRNA-Seq.S10_L001_R1.T C3N-02727 HNSCC miRNA-Seq tumor CPT0177700009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L001_R1_001.unaln.bam 268042821 BAM S10_L001_R1 submitted_unaligned CPTAC3 35baa34a-87b3-4441-8abb-ed9b57518b42 d3fe1d0f05fce9812236e023af7d87bf {"aliquot_tag": "ALQ_a407f405", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02727.miRNA-Seq.S46_L002_R1.A C3N-02727 HNSCC miRNA-Seq tissue_normal CPT0177730009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L002_R1_001.unaln.bam 188999597 BAM S46_L002_R1 submitted_unaligned CPTAC3 c4766cea-f434-4dbf-aefb-910ed6bce9a9 1cdd50975f1fe36c92ff723da4102569 {"aliquot_tag": "ALQ_e3a78ed5", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.miRNA-Seq.T.hg38 C3N-02727 HNSCC miRNA-Seq tumor CPT0177700009 d5884a2f-c56f-4ed2-b771-e937a53ba284_mirnaseq_gdc_realn.bam 290573212 BAM harmonized CPTAC3 15e18433-71b9-49b9-9053-878145aa5dd7 c7229c78db6d7076facf727de1c508d5 {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02727.REP_9967ddb5.miRNA-Seq.S46_L005_R1.T C3N-02727 HNSCC miRNA-Seq tumor CPT0177710009 190712_UNC32-K00270_0192_BH7HL3BBXY_GAGTGG_S46_L005_R1_001.unaln.bam 169359931 BAM S46_L005_R1 submitted_unaligned CPTAC3 bfc667b5-b647-4bde-aa7b-81b85667d9d7 c0846aec8566d913f884fa5ac91b9388 {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S46", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9967ddb5.miRNA-Seq.T.hg38 C3N-02727 HNSCC miRNA-Seq tumor CPT0177710009 10f0a2e5-7710-4060-a206-04462e45d8d8_mirnaseq_gdc_realn.bam 191095951 BAM harmonized CPTAC3 a6ab3cf3-fac1-4542-8c18-b83f04ae626e b4cc688698a08aa430be421484537a6d {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9967ddb5.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.chimeric.gdc_realn.bam 33869587 BAM chimeric harmonized CPTAC3 719fe3c9-b4b3-4b2f-ae64-cd3f51d5a4bd b1d0ebfa42d6099f06df79ec69000158 {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9967ddb5.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.genomic.gdc_realn.bam 8718704263 BAM genomic harmonized CPTAC3 cbed9719-64dd-4c31-9cf2-1a94f4f8fd00 789871d3316658a7eb32b373a6dc6bab {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9967ddb5.RNA-Seq.S16_L004_R1.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R1_001.fastq.gz 4186447836 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 06bcb46c-5165-49cf-aaa8-e1cd7bc0e156 a82551d276c0b7d38ffcef43434fae0d {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9967ddb5.RNA-Seq.S16_L004_R2.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R2_001.fastq.gz 4554988535 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 54804c92-509a-48fc-9a92-ab8b5376ce66 02b55cf1cc56654a482ef4612e37e9a1 {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9967ddb5.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.transcriptome.gdc_realn.bam 10860838075 BAM transcriptome harmonized CPTAC3 e18c1409-7b68-4628-af87-5906f95eba8e 3245049485e4b69c801569b819e6d4ee {"aliquot_tag": "REP_9967ddb5", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9d8c024.MethArray.Green.T C3N-02727 HNSCC Methylation_Array tumor CPT0177710006 203273630261_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 892868b5-1d49-440a-b094-587b2c8ef452 65889d0067bd6c8ebeba265b3ce47895 {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9d8c024.MethArray.Red.T C3N-02727 HNSCC Methylation_Array tumor CPT0177710006 203273630261_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 8ef49f20-2aec-410a-a36a-dbf8d99788f8 db7e22fc0548e9846c933f8e3705fcab {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9d8c024.WGS.T C3N-02727 HNSCC WGS tumor CPT0177710006 CPT0177710006.WholeGenome.RP-1303.bam 65160624693 BAM submitted_aligned CPTAC3 99a35606-a3ff-481f-835c-15c535b5a25e 397ab5f82f009505232906d591b03216 {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9d8c024.WGS.T.hg38 C3N-02727 HNSCC WGS tumor CPT0177710006 7d212c59-d44b-4209-baa1-4cc11d663cde_wgs_gdc_realn.bam 94309626912 BAM harmonized CPTAC3 6f023d6b-28c0-4dcf-aab9-67cc3da1bc46 42615a1df46446e70dd99d877cd17ccf {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9d8c024.WXS.T C3N-02727 HNSCC WXS tumor CPT0177710006 CPT0177710006.WholeExome.RP-1303.bam 24833035485 BAM submitted_aligned CPTAC3 3a0f4c9e-a962-48f0-81dd-6837bb2ef128 6c57e5c56ba8c85cee26e38cec66f234 {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.REP_9d8c024.WXS.T.hg38 C3N-02727 HNSCC WXS tumor CPT0177710006 7d212c59-d44b-4209-baa1-4cc11d663cde_wxs_gdc_realn.bam 34203568393 BAM harmonized CPTAC3 7f254a93-1d05-4de7-81e2-85a5c4218e85 cf7e9ed997a5b8ce99e1e63355833fef {"aliquot_tag": "REP_9d8c024", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.RNA-Seq.chimeric.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.chimeric.gdc_realn.bam 78230818 BAM chimeric harmonized CPTAC3 ac539833-eb29-420e-b8ba-bb8f09645281 a3e2d27c07366c994d0e3bdc2e835928 {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.chimeric.gdc_realn.bam 256780105 BAM chimeric harmonized CPTAC3 c70980dd-8940-4a59-9ccd-bc6101df387c 872b928e620030a529e5916cfb9e629c {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02727.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.chimeric.gdc_realn.bam 24682695 BAM chimeric harmonized CPTAC3 c8129d5c-818b-4d8f-b8e0-20c5d813486e 85dc27f1aefcf0c8cc6d0ef8acecebb8 {"aliquot_tag": "ALQ_7b27c206", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.RNA-Seq.genomic.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.genomic.gdc_realn.bam 6297858825 BAM genomic harmonized CPTAC3 2288d359-4f22-4ae4-8f57-ad87c53d5afa 14d006aacd75efbd339c77f9afb3b282 {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.genomic.gdc_realn.bam 8437398397 BAM genomic harmonized CPTAC3 db77f422-a7cf-4674-9dc6-6bee23edeb36 88bca8a036c4a3cae97daecf4cdf9291 {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02727.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.genomic.gdc_realn.bam 3736119094 BAM genomic harmonized CPTAC3 5900553f-6bef-46ba-9c87-bf87dae42e07 a54f12b2c46e1cef94b6b2be1b869389 {"aliquot_tag": "ALQ_7b27c206", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.RNA-Seq.S11_L003_R1.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3866141877 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 446b80eb-9e39-45f3-ac5c-cb7c01842aec 7f8934d6d2c834add624b59444ffecb6 {"aliquot_tag": "ALQ_a407f405", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02727.RNA-Seq.S11_L003_R2.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4192346139 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 296ca088-9806-4f79-9cae-62bace29aa36 27ff77ec5e06961ca66112ee4dc42676 {"aliquot_tag": "ALQ_a407f405", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02727.RNA-Seq.S11_L008_R1.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R1_001.fastq.gz 2780571927 FASTQ S11_L008_R1 submitted_unaligned CPTAC3 683166fd-ecea-41f8-9eb3-fcb9c6b840c9 b006a4860a900417decb319bdbaccee5 {"aliquot_tag": "ALQ_e3a78ed5", "sample": "S11", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.RNA-Seq.S11_L008_R2.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R2_001.fastq.gz 2999648177 FASTQ S11_L008_R2 submitted_unaligned CPTAC3 19c13f02-2bf0-4c05-b145-17c1b5fa030f dfcea2dcdacfdc6b3a9f174b2ceeba7b {"aliquot_tag": "ALQ_e3a78ed5", "sample": "S11", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.RNA-Seq.S66_R1.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R1_001.fastq.gz 1987655032 FASTQ S66_R1 submitted_unaligned CPTAC3 d246e913-438e-471d-8398-6acb12ccfc3a 154dcebca10cd67c3541f5cc68e64842 {"aliquot_tag": "ALQ_7b27c206", "sample": "S66", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.RNA-Seq.S66_R2.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R2_001.fastq.gz 2129472712 FASTQ S66_R2 submitted_unaligned CPTAC3 a788bf2c-28f0-4041-a495-2f6c2ebbd67b b78159363e49302ae1533f3776cd7071 {"aliquot_tag": "ALQ_7b27c206", "sample": "S66", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.RNA-Seq.transcriptome.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.transcriptome.gdc_realn.bam 8510397771 BAM transcriptome harmonized CPTAC3 5bcd38b5-9bbe-4b2f-bdee-31e768c61431 705a2df3aa93404c261ab2bccb63dfbd {"aliquot_tag": "ALQ_e3a78ed5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.transcriptome.gdc_realn.bam 9798075402 BAM transcriptome harmonized CPTAC3 525ac003-f4f6-4a93-9bc0-6e7c4a7c18eb 5d5cab2c5ead0fe182d1de0bd943163f {"aliquot_tag": "ALQ_a407f405", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02727.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.transcriptome.gdc_realn.bam 2239670732 BAM transcriptome harmonized CPTAC3 c6a11ae0-60a4-4703-9335-0cb29cc2dedd cf19cc2d3dc6f60b9d15a08127818d35 {"aliquot_tag": "ALQ_7b27c206", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.WGS.N C3N-02727 HNSCC WGS blood_normal CPT0177820002 CPT0177820002.WholeGenome.RP-1303.bam 65291598979 BAM submitted_aligned CPTAC3 53d35c55-274d-4b75-97ee-90d349df4a51 b6118756ad07057051ccf999a3d11559 {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02727.WGS.N.hg38 C3N-02727 HNSCC WGS blood_normal CPT0177820002 e4e0a7a8-7b08-4410-85c6-b9bf8e6741ad_wgs_gdc_realn.bam 96179092735 BAM harmonized CPTAC3 534a92c0-65c8-4e42-a3bb-b673c4c0c952 a0b1049cb5497da327de4b35b0f30c7d {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02727.WXS.A C3N-02727 HNSCC WXS tissue_normal CPT0177730006 CPT0177730006.WholeExome.RP-1303.bam 45036632991 BAM submitted_aligned CPTAC3 cb63efb7-a3b1-457a-8e58-3875466072b6 2e9edd006076f15a546a6586d50270fe {"aliquot_tag": "ALQ_73189344", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.WXS.A.hg38 C3N-02727 HNSCC WXS tissue_normal CPT0177730006 77600803-d00f-41b1-a9d6-94639aa9ae4c_wxs_gdc_realn.bam 61968923683 BAM harmonized CPTAC3 033dd809-04d0-40c5-a173-991dddc8582c 43141cae0891141dd496018862fde030 {"aliquot_tag": "ALQ_73189344", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02727.WXS.N C3N-02727 HNSCC WXS blood_normal CPT0177820002 CPT0177820002.WholeExome.RP-1303.bam 28217401624 BAM submitted_aligned CPTAC3 a99684ae-ee3b-4caf-bd5c-10f3208198cf 04b3bb4e8d4b2380c7181d3f71686f0f {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02727.WXS.N.hg38 C3N-02727 HNSCC WXS blood_normal CPT0177820002 e4e0a7a8-7b08-4410-85c6-b9bf8e6741ad_wxs_gdc_realn.bam 39255452096 BAM harmonized CPTAC3 35952812-07f6-4892-853d-756808de65d2 a2458a2d4669c16c106afe3fdbaed54c {"aliquot_tag": "ALQ_b843cc38", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02727.WXS.T C3N-02727 HNSCC WXS tumor CPT0177700006 CPT0177700006.WholeExome.RP-1303.bam 21422171772 BAM submitted_aligned CPTAC3 cb13f827-c4af-49fb-8311-222dc397cf94 44492eace13a6a66c8eb74da834d1622 {"aliquot_tag": "ALQ_34b8e994", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02727.WXS.T.hg38 C3N-02727 HNSCC WXS tumor CPT0177700006 73a9d41d-c6fb-492a-894f-597027e12089_wxs_gdc_realn.bam 29225087083 BAM harmonized CPTAC3 7e341e90-27ab-42b4-8870-307a9e9d67df 44147e65752ccec8303a5d6ea5891e9d {"aliquot_tag": "ALQ_34b8e994", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.MethArray.Green.A C3N-02728 LUAD Methylation_Array tissue_normal CPT0178990006 203220070157_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a2c200c1-a4ff-41f5-b802-84fea4e90afb 9a87a694cdc6c39bdbf0fc14a87d1b33 {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.MethArray.Green.T C3N-02728 LUAD Methylation_Array tumor CPT0178980006 203219670150_R08C01_Grn.idat 13676230 IDAT Green NA CPTAC3 8a61746c-b693-4028-9b61-7b10b0ac8c66 629de3e8e4812efb96fd47bb230d5a26 {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.MethArray.Red.A C3N-02728 LUAD Methylation_Array tissue_normal CPT0178990006 203220070157_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 d553cde2-dc70-47d2-ae11-bb387e65b646 71c773c638a85e3944cf548274081f2c {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.MethArray.Red.T C3N-02728 LUAD Methylation_Array tumor CPT0178980006 203219670150_R08C01_Red.idat 13676230 IDAT Red NA CPTAC3 22b0aa00-beae-4805-822e-ad8c39f21051 e9299e609091e63cdd55fe31361dbecc {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.miRNA-Seq.A.hg38 C3N-02728 LUAD miRNA-Seq tissue_normal CPT0178990009 f87afed6-2bca-4201-b0b4-b78db1e6cac1_mirnaseq_gdc_realn.bam 292988204 BAM harmonized CPTAC3 aa65cd45-6f62-4020-84df-a69178551345 46958f80b16508fa9e705adb738dc3c7 {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.miRNA-Seq.S15_L008_R1.A C3N-02728 LUAD miRNA-Seq tissue_normal CPT0178990009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L008_R1_001.unaln.bam 269935849 BAM S15_L008_R1 submitted_unaligned CPTAC3 f2a58ff5-88fe-4157-936e-0416efc61a87 78f6dd5a56c04b9a4e27d6ab4336a8a8 {"aliquot_tag": "ALQ_655587ed", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.miRNA-Seq.S44_L007_R1.T C3N-02728 LUAD miRNA-Seq tumor CPT0178980009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L007_R1_001.unaln.bam 241009318 BAM S44_L007_R1 submitted_unaligned CPTAC3 0a48cc93-2a3d-4bae-af7f-cccce2caedf4 8e564d88090a01d3c11d60e39b131f50 {"aliquot_tag": "ALQ_5835ae5d", "sample": "S44", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.miRNA-Seq.T.hg38 C3N-02728 LUAD miRNA-Seq tumor CPT0178980009 29dde79f-ad8f-4cfa-92ad-da7d3075e150_mirnaseq_gdc_realn.bam 260535843 BAM harmonized CPTAC3 75b5d14c-d0ab-4a80-a218-6f5d74130a38 074b079ecedb4cb72d42f32e74b3f602 {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.RNA-Seq.chimeric.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.chimeric.gdc_realn.bam 485300665 BAM chimeric harmonized CPTAC3 f30449d6-fc12-4ec1-afcb-877261056594 19917bcbfb2bb9a6379a7ca6df9aae89 {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.RNA-Seq.chimeric.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.chimeric.gdc_realn.bam 47627938 BAM chimeric harmonized CPTAC3 9514d3c2-1d81-4475-97ce-b643e8da05d6 5dd7760a4f9593016f1a63f9a62f0084 {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.RNA-Seq.genomic.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.genomic.gdc_realn.bam 8874175553 BAM genomic harmonized CPTAC3 526c5caf-56c9-4051-b6d6-b93cab1fdcfa 3fcfcea38fcb8822342bf9726857bcbf {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.RNA-Seq.genomic.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.genomic.gdc_realn.bam 8343152705 BAM genomic harmonized CPTAC3 7f3e03c5-2de2-4460-b457-280ed810613d 2850ff07fbf9a7838918ec05c1b423f3 {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.RNA-Seq.S11_L003_R1.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3857907449 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 e1b82508-062d-403f-bb0b-478f4981c22c a6b8611b2ce9c1782d7fbda8ed7bec50 {"aliquot_tag": "ALQ_655587ed", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.RNA-Seq.S11_L003_R2.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 4248997114 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 41014d3e-cd79-4d85-b627-b2e95da7f494 2186ddaa2a02a9addfa4ebc73c95b998 {"aliquot_tag": "ALQ_655587ed", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.RNA-Seq.S4_L001_R1.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3811397785 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 b20387d6-e4c1-4305-ad92-9e379b8c9d64 0d9ca149be8f463ed1146aaf2c633b88 {"aliquot_tag": "ALQ_5835ae5d", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.RNA-Seq.S4_L001_R2.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4356572921 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 20ee9b1a-a9fb-4c6a-8030-69eac3cd032a 243ef5e9271cec49bb6fd24e7e7e7ff4 {"aliquot_tag": "ALQ_5835ae5d", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.RNA-Seq.transcriptome.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.transcriptome.gdc_realn.bam 8895799505 BAM transcriptome harmonized CPTAC3 28e10b09-caca-4905-8e3c-2c2dcdd845db ec91d95e416e5a8b49812c44c3b0dc03 {"aliquot_tag": "ALQ_655587ed", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.RNA-Seq.transcriptome.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.transcriptome.gdc_realn.bam 7586485999 BAM transcriptome harmonized CPTAC3 7023aad6-f896-46c7-9c2d-729781472fc5 4f4f705fddc5fd1266448181de271b6d {"aliquot_tag": "ALQ_5835ae5d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.WGS.N C3N-02728 LUAD WGS blood_normal CPT0179080002 CPT0179080002.WholeGenome.RP-1303.bam 109676169284 BAM submitted_aligned CPTAC3 0674c28c-bee8-4550-ba5f-6494ef38ce3f 1abdb24fae5d944a0b90d992aafe0ad9 {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02728.WGS.N.hg38 C3N-02728 LUAD WGS blood_normal CPT0179080002 dc701198-9ba3-4d3a-8bdd-237021bb43d7_wgs_gdc_realn.bam 158022893434 BAM harmonized CPTAC3 46a1e8bc-fefa-482a-9ad3-99c3befb6798 fa7c4226941c1725d10cab07fd828b26 {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02728.WGS.T C3N-02728 LUAD WGS tumor CPT0178980006 CPT0178980006.WholeGenome.RP-1303.bam 120412839562 BAM submitted_aligned CPTAC3 f73af00b-b882-4572-a745-3bfb8331a770 48024d63753ad4c90c47eeb357ee6a4b {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.WGS.T.hg38 C3N-02728 LUAD WGS tumor CPT0178980006 7f0ab742-8b67-446d-b46f-9f46e0c33160_wgs_gdc_realn.bam 172895847174 BAM harmonized CPTAC3 65765e12-3a02-442f-b146-2697c6174d4f 62f116c212c02d8371cd6ca6bd5f270d {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.WXS.A C3N-02728 LUAD WXS tissue_normal CPT0178990006 CPT0178990006.WholeExome.RP-1303.bam 21142020676 BAM submitted_aligned CPTAC3 019256f2-fa9b-46b3-9d48-5de4070efccb de333f2aeb87410870a6ab0b752553fe {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.WXS.A.hg38 C3N-02728 LUAD WXS tissue_normal CPT0178990006 e4cb67e9-3d83-4cfb-b75e-501720195dd7_wxs_gdc_realn.bam 29913246253 BAM harmonized CPTAC3 a59f033a-3c00-45f6-be51-fe6e3138e323 84741804d928e4b29e9406d63b027a38 {"aliquot_tag": "ALQ_f5ea9a7c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02728.WXS.N C3N-02728 LUAD WXS blood_normal CPT0179080002 CPT0179080002.WholeExome.RP-1303.bam 27715694486 BAM submitted_aligned CPTAC3 1067781d-682a-43a4-a448-797c48f57724 09559a23c8bab1c8ee48f270e426ecd5 {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02728.WXS.N.hg38 C3N-02728 LUAD WXS blood_normal CPT0179080002 dc701198-9ba3-4d3a-8bdd-237021bb43d7_wxs_gdc_realn.bam 38540829129 BAM harmonized CPTAC3 7141d494-8fdd-4692-b090-cf99573aefc6 2cf4dce60c3c549697cc046d55afe6fa {"aliquot_tag": "ALQ_4e9f2da9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02728.WXS.T C3N-02728 LUAD WXS tumor CPT0178980006 CPT0178980006.WholeExome.RP-1303.bam 27125758375 BAM submitted_aligned CPTAC3 aa7494f3-25a0-44c1-9780-6c455328de64 b1fef711ebc2cde6a7d8edc21cf5c154 {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02728.WXS.T.hg38 C3N-02728 LUAD WXS tumor CPT0178980006 7f0ab742-8b67-446d-b46f-9f46e0c33160_wxs_gdc_realn.bam 37447188249 BAM harmonized CPTAC3 be5c26eb-ce72-4d4f-b33b-b91a2f7ce492 dcca3664e724a98b467a9216e7338d94 {"aliquot_tag": "ALQ_c88ab3cc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.MethArray.Green.A C3N-02729 LUAD Methylation_Array tissue_normal CPT0148300009 203219670122_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 15b5bb0d-db67-40d8-8c1e-bf63ffa2853c 1619161a4121c3d8d0a4a78058bf9cc7 {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.MethArray.Green.T C3N-02729 LUAD Methylation_Array tumor CPT0148280010 203219650065_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e58ca215-a58e-49f3-9ca8-d3ae9f3fdcee 0bd0189c2d61f65f28e613815d2b358c {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.MethArray.Red.A C3N-02729 LUAD Methylation_Array tissue_normal CPT0148300009 203219670122_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 639960d4-bb23-4996-94ce-fd0772fed099 39514a8a7770eae8cd262c9cc9c28f5a {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.MethArray.Red.T C3N-02729 LUAD Methylation_Array tumor CPT0148280010 203219650065_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 40ae96d3-5b18-46e7-b87e-eedcff45a2a6 db93063a19281039cbabe6649a5d936b {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.miRNA-Seq.A.hg38 C3N-02729 LUAD miRNA-Seq tissue_normal CPT0148300006 f4edecd8-c14c-4933-b772-f81fc27481c1_mirnaseq_gdc_realn.bam 251545554 BAM harmonized CPTAC3 533e6893-d3f7-4590-bcb7-402608e1be5a 7c3fce58f2c34fea3504a704cbae09b4 {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.miRNA-Seq.S23_L003_R1.T C3N-02729 LUAD miRNA-Seq tumor CPT0148280007 181108_UNC31-K00269_0162_AH255GBBXY_TCGAAG_S23_L003_R1_001.unaln.bam 242710609 BAM S23_L003_R1 submitted_unaligned CPTAC3 ca91d86e-1a07-41f6-8ed6-eb1cf210ae15 b9150d7c8a03ee1cff4da97e938c95b6 {"aliquot_tag": "ALQ_5bc5747a", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.miRNA-Seq.S6_L003_R1.A C3N-02729 LUAD miRNA-Seq tissue_normal CPT0148300006 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L003_R1_001.unaln.bam 224952342 BAM S6_L003_R1 submitted_unaligned CPTAC3 b54cf960-cc75-4b16-ad1b-8543710e5baa ab3825f90ecd9d97501aaa07440bba70 {"aliquot_tag": "ALQ_d7eedc88", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.miRNA-Seq.T.hg38 C3N-02729 LUAD miRNA-Seq tumor CPT0148280007 a3d87bf5-533b-47c1-9cd6-c30c24e04272_mirnaseq_gdc_realn.bam 263862892 BAM harmonized CPTAC3 cd03edc3-0e6d-4f95-be77-d24439da9980 3539da697311f08db77c7bdfcac23e1e {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.RNA-Seq.chimeric.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.chimeric.gdc_realn.bam 116434645 BAM chimeric harmonized CPTAC3 2ac7b213-5ba3-4fc5-8a8c-282a2cfe0910 64cc51ead322a81ab473053189da8efd {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.RNA-Seq.chimeric.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.chimeric.gdc_realn.bam 42366246 BAM chimeric harmonized CPTAC3 b91fa9a9-f5fb-413c-91a5-2ac1ee99988e e4594fa7e705ca6cbf3250cd5b94d8af {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.RNA-Seq.genomic.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.genomic.gdc_realn.bam 9940331865 BAM genomic harmonized CPTAC3 65ecc3ce-ccbe-4d94-93ec-8dc9631ec1d0 ba20b22048733250466d2093c7ecbdb8 {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.RNA-Seq.genomic.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.genomic.gdc_realn.bam 9776086786 BAM genomic harmonized CPTAC3 8cf805f8-dcba-47db-aa9c-f11547f07137 eb3916c9a67c0291818a8f3a50ab92da {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.RNA-Seq.S18_L005_R1.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4618954572 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 21a4e2e2-229b-4fb0-b98b-68415b48b5bf fd2984c8ec1b5d44e73fe8a7e56e1e77 {"aliquot_tag": "ALQ_5bc5747a", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.RNA-Seq.S18_L005_R2.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 4871544234 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 4f7cda8b-0750-471e-b10f-a3beb7cf8511 1850a521aac0c3f8da2e5fc5ea258866 {"aliquot_tag": "ALQ_5bc5747a", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.RNA-Seq.S3_L001_R1.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R1_001.fastq.gz 4709708927 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 32fae9bd-f322-43cf-b966-7f945f6d815c bc0ac5880605ed51ce01cb15309b2a05 {"aliquot_tag": "ALQ_d7eedc88", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.RNA-Seq.S3_L001_R2.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R2_001.fastq.gz 5253045233 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 2de00116-b2fe-422f-a628-c413cdd293c8 2d8dd9f424c045701554a99465790add {"aliquot_tag": "ALQ_d7eedc88", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.RNA-Seq.transcriptome.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.transcriptome.gdc_realn.bam 11605260004 BAM transcriptome harmonized CPTAC3 98761d74-1ebc-4b3f-90e2-8b2a4ee594ac a895bc68b7fe7df8de94533098536de9 {"aliquot_tag": "ALQ_d7eedc88", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.RNA-Seq.transcriptome.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.transcriptome.gdc_realn.bam 12001530207 BAM transcriptome harmonized CPTAC3 cda27bd7-0603-4234-8554-440056164573 781c92364bcee85eef1d60f2f8b15ec1 {"aliquot_tag": "ALQ_5bc5747a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.WGS.A C3N-02729 LUAD WGS tissue_normal CPT0148300009 CPT0148300009.WholeGenome.RP-1303.bam 58815479840 BAM submitted_aligned CPTAC3 4e70ab4b-6e2c-4b8e-9d37-531c06d045da a8c8b348a1fa3a9db25dba508a854351 {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.WGS.A.hg38 C3N-02729 LUAD WGS tissue_normal CPT0148300009 4fa1d226-b5d3-4351-9f5e-b96922134dcf_wgs_gdc_realn.bam 85866861212 BAM harmonized CPTAC3 72606c03-8bc7-4f80-88d4-4b2e1bb62d57 dd48de684b66a2e322d77e802678bcdb {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.WGS.N C3N-02729 LUAD WGS blood_normal CPT0148310002 CPT0148310002.WholeGenome.RP-1303.bam 63693939631 BAM submitted_aligned CPTAC3 e783adbb-a108-4e33-8731-0708347d8e01 74102a854b3c5b5ab5327af3a6c01c60 {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02729.WGS.N.hg38 C3N-02729 LUAD WGS blood_normal CPT0148310002 b323a8a3-1853-41c7-b166-dfa3a1dbc32b_wgs_gdc_realn.bam 93463162539 BAM harmonized CPTAC3 30958cdc-5c72-413d-8ffe-6d3b55b38bc5 7b75abf1847812a3956d77af0174ab7a {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02729.WGS.T C3N-02729 LUAD WGS tumor CPT0148280010 CPT0148280010.WholeGenome.RP-1303.bam 63450055221 BAM submitted_aligned CPTAC3 d66bdad1-b5be-44ae-912a-38247a7cc685 331d767a01e216d91ccb5eec12a56256 {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.WGS.T.hg38 C3N-02729 LUAD WGS tumor CPT0148280010 a47247f3-753f-4e6f-820f-4c408ed60d32_wgs_gdc_realn.bam 92579133060 BAM harmonized CPTAC3 8a26cda2-7fab-4a4e-8c5d-1231900bf89d 194c0d3cda54d878439cdc3397be850c {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.WXS.A C3N-02729 LUAD WXS tissue_normal CPT0148300009 CPT0148300009.WholeExome.RP-1303.bam 23627270350 BAM submitted_aligned CPTAC3 6ae9f77c-709a-4295-a1e5-42806bf5ac8b 211e9bdcda3c0a8083d93342310e1b6e {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.WXS.A.hg38 C3N-02729 LUAD WXS tissue_normal CPT0148300009 4fa1d226-b5d3-4351-9f5e-b96922134dcf_wxs_gdc_realn.bam 32377813036 BAM harmonized CPTAC3 59abe3d4-3fd6-43a3-94c2-caf0e0047291 b985721d4afae2777eb4b7bebd529dbd {"aliquot_tag": "ALQ_4751c119", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02729.WXS.N C3N-02729 LUAD WXS blood_normal CPT0148310002 CPT0148310002.WholeExome.RP-1303.bam 32539022312 BAM submitted_aligned CPTAC3 9d84a8bf-1648-49dd-857d-c4dacdc01601 bb5203bf4fcb4e50b4442bc617bce8d6 {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02729.WXS.N.hg38 C3N-02729 LUAD WXS blood_normal CPT0148310002 b323a8a3-1853-41c7-b166-dfa3a1dbc32b_wxs_gdc_realn.bam 43416494427 BAM harmonized CPTAC3 17748956-bce7-4c4d-a6fe-725f2c7cc030 e23d113808c9e812723bc9df52491c13 {"aliquot_tag": "ALQ_ede33121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02729.WXS.T C3N-02729 LUAD WXS tumor CPT0148280010 CPT0148280010.WholeExome.RP-1303.bam 24893784428 BAM submitted_aligned CPTAC3 a7451968-b30e-46d0-af3c-0725bf2c6de7 9779dca3af779e8e22f87101948617b3 {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02729.WXS.T.hg38 C3N-02729 LUAD WXS tumor CPT0148280010 a47247f3-753f-4e6f-820f-4c408ed60d32_wxs_gdc_realn.bam 34332633925 BAM harmonized CPTAC3 5f2ff26c-b856-4ec4-978d-a214595c88d2 ead4fc3d0c0be7ed97775eca02e6b15d {"aliquot_tag": "ALQ_dcbad098", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.ANN_3381821b.MethArray.Green.T C3N-02730 HNSCC Methylation_Array tumor CPT0207870007 203281980233_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a37c8c8e-442e-4d4a-a04a-c857f41ef823 d75be2f190f5fb0b078f29ef1c33368d {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.ANN_3381821b.MethArray.Red.T C3N-02730 HNSCC Methylation_Array tumor CPT0207870007 203281980233_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 90d1ff03-51d5-4e72-98ee-c79fff3e5135 22b5b45e5c0ff9a8c92c086a20fcfc97 {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.ANN_3381821b.WGS.T C3N-02730 HNSCC WGS tumor CPT0207870007 CPT0207870007.WholeGenome.RP-1303.bam 60707914043 BAM submitted_aligned CPTAC3 84fa8e4d-90c4-4a72-aaf4-50ee5f678574 f07e3fa0d9948ac06eeddb9bc9195c15 {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.ANN_3381821b.WGS.T.hg38 C3N-02730 HNSCC WGS tumor CPT0207870007 ac6a9fd3-ca87-4867-94ab-03056f12936a_wgs_gdc_realn.bam 87993457005 BAM harmonized CPTAC3 ec4fb12e-ccd3-46a1-8eae-877c0fbf1831 4fb32ec3011b1f69005d78e71352f97c {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.ANN_3381821b.WXS.T C3N-02730 HNSCC WXS tumor CPT0207870007 CPT0207870007.WholeExome.RP-1303.bam 23614581238 BAM submitted_aligned CPTAC3 5767071e-3ec2-4107-ac66-a48505dcaeff 31fa7ce20515ffc1471e59cfcaa0057c {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.ANN_3381821b.WXS.T.hg38 C3N-02730 HNSCC WXS tumor CPT0207870007 ac6a9fd3-ca87-4867-94ab-03056f12936a_wxs_gdc_realn.bam 32180334608 BAM harmonized CPTAC3 fb95b973-712c-4c79-ac6e-670018f48c16 e07b8af40a787dcb3cc099ff16358677 {"aliquot_tag": "ANN_3381821b", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.ANN_7d3703f1.WGS.N C3N-02730 HNSCC WGS blood_normal CPT0207930002 CPT0207930002.WholeGenome.RP-1303.bam 76274780633 BAM submitted_aligned CPTAC3 80fc096b-71a5-41cb-80f4-8f5c6273e800 77072bd20dd05c052aaf18551b29103a {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02730.ANN_7d3703f1.WGS.N.hg38 C3N-02730 HNSCC WGS blood_normal CPT0207930002 94f56b2c-3b64-4b92-b36c-8e095ce5d28d_wgs_gdc_realn.bam 114074944161 BAM harmonized CPTAC3 7256b713-103f-435d-8f1c-9910aa083afd 9a24efc063f12facea5e8d5388dd3732 {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02730.ANN_7d3703f1.WXS.N C3N-02730 HNSCC WXS blood_normal CPT0207930002 CPT0207930002.WholeExome.RP-1303.bam 42027247122 BAM submitted_aligned CPTAC3 349ae85a-e9ca-4acc-9f93-6503548ea7fb 64238257dc660bf72ed265f2fb14c212 {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02730.ANN_7d3703f1.WXS.N.hg38 C3N-02730 HNSCC WXS blood_normal CPT0207930002 94f56b2c-3b64-4b92-b36c-8e095ce5d28d_wxs_gdc_realn.bam 57911338150 BAM harmonized CPTAC3 100e34c1-170c-4dbd-ad63-de812aa9378a 0da7c8abf72b6c66541fe31f241fc67c {"aliquot_tag": "ANN_7d3703f1", "aliquot_annotation": "The WGS data for this aliquot failed the GDC harmonization pipeline.", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02730.miRNA-Seq.S17_L003_R1.T C3N-02730 HNSCC miRNA-Seq tumor CPT0207870010 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L003_R1_001.unaln.bam 246676588 BAM S17_L003_R1 submitted_unaligned CPTAC3 f30694c8-f9ff-40f9-b0d2-1c05b81ddeac 0a99e2e461d2b2af668e598195fae4d2 {"aliquot_tag": "ALQ_b4fe26f9", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.miRNA-Seq.T.hg38 C3N-02730 HNSCC miRNA-Seq tumor CPT0207870010 486b5628-2ec1-4232-b9e9-3ad21e3d6efd_mirnaseq_gdc_realn.bam 272887972 BAM harmonized CPTAC3 21819938-2e92-415c-a2a6-0d534bc4cf39 d260551694bf48f5d1aba0c781a5086d {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.RNA-Seq.chimeric.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.chimeric.gdc_realn.bam 336773960 BAM chimeric harmonized CPTAC3 9a6650b7-56d9-44b8-882f-e568ea470fa5 e4deb7582aa8d0295ea477f1d4d6c868 {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.RNA-Seq.genomic.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.genomic.gdc_realn.bam 8924912052 BAM genomic harmonized CPTAC3 d59ba3a5-9501-4242-8e4e-a5aafadb97b7 6845ff44804cdccca8f3d3707ba49e48 {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.RNA-Seq.S7_L008_R1.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R1_001.fastq.gz 3945936473 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 0a9da540-489a-45dd-919c-e7962460dc8b 8609f8789cf05ba11188d015ae523a83 {"aliquot_tag": "ALQ_b4fe26f9", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.RNA-Seq.S7_L008_R2.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R2_001.fastq.gz 4699034398 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 0ee7c388-3057-4e07-afb9-84ece3aaea54 a0c9bd7b8a208cbd6318434a4a39160c {"aliquot_tag": "ALQ_b4fe26f9", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02730.RNA-Seq.transcriptome.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.transcriptome.gdc_realn.bam 11543110949 BAM transcriptome harmonized CPTAC3 9fd9cd27-44f9-4df7-9162-fbe2d9143f39 b6c53d25ea16e65a5de0fdc7d798e942 {"aliquot_tag": "ALQ_b4fe26f9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.ANN_7b2645c2.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.chimeric.gdc_realn.bam 261064318 BAM chimeric harmonized CPTAC3 679c02d9-ec7d-4edb-a20b-4c9df8a759a8 9b86466044f20cf3a171eb3f50b05c94 {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.ANN_7b2645c2.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.genomic.gdc_realn.bam 11326125338 BAM genomic harmonized CPTAC3 0c1615e9-4d03-44d1-84ef-eb01cb3524d7 9486731db5072ee9f090c40806fa550b {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.ANN_7b2645c2.RNA-Seq.S4_L006_R1.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R1_001.fastq.gz 3957470951 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 03aaf392-5fdd-4d5e-ad97-60c83afddd7f 905a737a0d4d2fb79fdc648c0bc26d46 {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.ANN_7b2645c2.RNA-Seq.S4_L006_R2.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R2_001.fastq.gz 4464592514 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 821f4055-a8c6-4d89-8d28-0ef2b9a4f43d 74dfd9a890230ab233863336a92962c5 {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.ANN_7b2645c2.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.transcriptome.gdc_realn.bam 10499728196 BAM transcriptome harmonized CPTAC3 3e2152ac-c577-4e19-8d7a-a2c21ac9caa9 3db743fd2c10a59143dc06daca9a574c {"aliquot_tag": "ANN_7b2645c2", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_19d053f2.WXS.N C3N-02754 PDA WXS blood_normal CPT0183910002 CPT0183910002.WholeExome.RP-1303.bam 46264227546 BAM submitted_aligned CPTAC3 afe77d77-ad47-44cc-8b31-bcb8e10b36d8 73b020fa0490dcc479c05aadbf804b1a {"aliquot_tag": "DUP_19d053f2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02754.DUP_19d053f2.WXS.N.hg38 C3N-02754 PDA WXS blood_normal CPT0183910002 f68d0426-1853-4360-9855-675a07b73fd1_wxs_gdc_realn.bam 63996240523 BAM harmonized CPTAC3 c2310b6d-e8f0-4f16-99d0-2c74edf41bc5 d7952fea90d753f6290efd5828d569cf {"aliquot_tag": "DUP_19d053f2", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02754.DUP_4360e393.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.chimeric.gdc_realn.bam 565206889 BAM chimeric harmonized CPTAC3 07504c54-b5fc-4e88-8bac-7427e4e6f6fd dde4fe2f23dfa9df751ecbffa334f74e {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_4360e393.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.genomic.gdc_realn.bam 8030680977 BAM genomic harmonized CPTAC3 e027e760-132c-4c58-b996-cceee4b017ec 41738bc6c17050ff37a68bcae1380087 {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_4360e393.RNA-Seq.S20_L006_R1.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R1_001.fastq.gz 3709732207 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 02f37a94-0c53-4e40-9295-d1350a36608a 8b6cd00eabedeadebbdd2558cac6c6f8 {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_4360e393.RNA-Seq.S20_L006_R2.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R2_001.fastq.gz 3917825948 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 108e8b34-73a3-47ee-bd45-11ba0073b59e 72d169513e5e18e5d3991cd483cde375 {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_4360e393.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.transcriptome.gdc_realn.bam 9751340580 BAM transcriptome harmonized CPTAC3 47d8ead2-800e-405d-b539-fb77042be2e7 b75180faeefee7400f3a2ee959b67a9b {"aliquot_tag": "DUP_4360e393", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_718ce22d.RNA-Seq.chimeric.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.chimeric.gdc_realn.bam 493706173 BAM chimeric harmonized CPTAC3 1c5db054-a8f6-49d4-b795-79d1401b0650 40da14bd9a7504e537788ab441229178 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02754.DUP_718ce22d.RNA-Seq.genomic.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.genomic.gdc_realn.bam 9851418426 BAM genomic harmonized CPTAC3 06afa2fb-e3e2-4a6c-888e-b0029f21ff90 4364f3b3b5d84143eed0f597f27ce7bc {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02754.DUP_718ce22d.RNA-Seq.S16_L004_R1.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4087946988 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 b7ba22fa-f51a-4e7c-805b-9b9ddf71cc60 432b18ea146d45fe07a28632f1ebac78 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02754.DUP_718ce22d.RNA-Seq.S16_L004_R2.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 4465191159 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 eee114a4-c849-41bc-bc0b-170172f63544 a4246e6fed57e65000f45607bfab5994 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02754.DUP_718ce22d.RNA-Seq.transcriptome.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.transcriptome.gdc_realn.bam 9558121394 BAM transcriptome harmonized CPTAC3 f4d105f5-0f96-45bb-9752-f5f78fcb5cab 8e13fd22333077e8c6626f77cfb62d49 {"aliquot_tag": "DUP_718ce22d", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02754.DUP_7c4b81db.WXS.T C3N-02754 PDA WXS tumor CPT0183850037 CPT0183850037.WholeExome.RP-1303.bam 22401445307 BAM submitted_aligned CPTAC3 075bd658-411c-43a1-8511-84071cdd8ddb d2618135af43e21171135997c9e2039a {"aliquot_tag": "DUP_7c4b81db", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_7c4b81db.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850037 843d78c3-420d-4bfb-8b5b-5ddcac5ecdf7_wxs_gdc_realn.bam 31661583964 BAM harmonized CPTAC3 a22d0be0-06b9-4d90-9a78-ca9c549017f6 9a9527bb933c961850746648bd2fc2a8 {"aliquot_tag": "DUP_7c4b81db", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_9245e0f7.WXS.T C3N-02754 PDA WXS tumor CPT0183850035 CPT0183850035.WholeExome.RP-1303.bam 39693617631 BAM submitted_aligned CPTAC3 ffc47d8c-c0bf-47ad-9d9b-3c0ec520f216 1355518509cbc3a0eafbb821842f823e {"aliquot_tag": "DUP_9245e0f7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_9245e0f7.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850035 ae3d946d-820e-4bb3-a056-c339282f49a5_wxs_gdc_realn.bam 55982343240 BAM harmonized CPTAC3 3f9856b2-b05a-4799-9230-d4507e033e53 58a1d04f976ea08b6d9ab4cf9080563f {"aliquot_tag": "DUP_9245e0f7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_b4cb14d.WXS.T C3N-02754 PDA WXS tumor CPT0183850036 CPT0183850036.WholeExome.RP-1303.bam 28449596643 BAM submitted_aligned CPTAC3 b69b6761-e422-450b-923d-79a87678f55e a5427fe6a1e6808067777ffbf250e64c {"aliquot_tag": "DUP_b4cb14d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_b4cb14d.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850036 ac4a8e84-c4ae-4b8c-b872-beea3c45fb65_wxs_gdc_realn.bam 38748918776 BAM harmonized CPTAC3 de5a7db9-1fd5-4154-ba79-437029d0a6dd 7745b68bd0e7c2879f109fc324e48360 {"aliquot_tag": "DUP_b4cb14d", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_dd047630.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.chimeric.gdc_realn.bam 497808158 BAM chimeric harmonized CPTAC3 06e7c4a4-a1b9-40ba-a576-f297193f5886 b03be25b70402ec9c20e6858e0a985f1 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_dd047630.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.genomic.gdc_realn.bam 7288102404 BAM genomic harmonized CPTAC3 db192c3b-9a76-406b-a04d-cc22d6f55653 2bae68a26311b432275610cd13cb4229 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_dd047630.RNA-Seq.S14_L004_R1.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 3158735118 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 0e9f4531-da97-4af8-890e-e08f34f36220 7ac6b445f322c952558f4c678b1560ec {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_dd047630.RNA-Seq.S14_L004_R2.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 3453435097 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 8471959f-8d39-484b-8c4c-d30ef5961985 80058a53dd033a8701b7cc16502089b6 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02754.DUP_dd047630.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.transcriptome.gdc_realn.bam 7874163783 BAM transcriptome harmonized CPTAC3 f442be27-a4c8-4290-861c-99afeb5ffb43 6d1cde2e5c823c72c2d13b6838c2dfd5 {"aliquot_tag": "DUP_dd047630", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.MethArray.Green.A C3N-02757 LUAD Methylation_Array tissue_normal CPT0183960006 203028200100_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 39a494fe-695f-4cd3-a5cd-4df3cc50625b 3dada41ddcdf117c4f4ea0171e8b0120 {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.MethArray.Green.T C3N-02757 LUAD Methylation_Array tumor CPT0183940007 203219650177_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 09af74c8-f13f-440e-89be-7f3cbabc3bfd ee81d572b394fc9276e2fe315b0b5931 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.MethArray.Red.A C3N-02757 LUAD Methylation_Array tissue_normal CPT0183960006 203028200100_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 ab7a09e7-d597-4400-ba2b-362b3303afcb b905e0b88466ee7b945612c3aeeabac0 {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.MethArray.Red.T C3N-02757 LUAD Methylation_Array tumor CPT0183940007 203219650177_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 7df128b3-aeac-4eac-8e0c-872e93a42820 91e9657f699fc2ab5168b096db8fdf43 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.miRNA-Seq.A.hg38 C3N-02757 LUAD miRNA-Seq tissue_normal CPT0183960009 e9a2268a-c44f-4bef-95c6-090c983f115f_mirnaseq_gdc_realn.bam 265924767 BAM harmonized CPTAC3 932f2c25-5271-40f4-b527-e3903ae2a7f7 2132057720a1608c0aa0d98e6aca55ae {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.miRNA-Seq.S13_L004_R1.A C3N-02757 LUAD miRNA-Seq tissue_normal CPT0183960009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTTGTA_S13_L004_R1_001.unaln.bam 240646051 BAM S13_L004_R1 submitted_unaligned CPTAC3 1efc2b07-2ec2-4e50-bb06-1686ab5f15e0 8dfb1703cb996277af391184f0444f1e {"aliquot_tag": "ALQ_3c22566a", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.miRNA-Seq.S24_L007_R1.T C3N-02757 LUAD miRNA-Seq tumor CPT0183940010 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L007_R1_001.unaln.bam 208393211 BAM S24_L007_R1 submitted_unaligned CPTAC3 e973aa42-0bb2-4a5e-8479-55623bb4d2b6 ecb342c93c3a61bd60d9e1f48ce6232f {"aliquot_tag": "ALQ_26258cef", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.miRNA-Seq.T.hg38 C3N-02757 LUAD miRNA-Seq tumor CPT0183940010 7287ae53-cd42-40b9-83c9-d21c6421eeac_mirnaseq_gdc_realn.bam 225774645 BAM harmonized CPTAC3 2b656152-02d5-491a-ac4e-78559508cc28 35b3cf73897852a266745751f99aeb4e {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.RNA-Seq.chimeric.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.chimeric.gdc_realn.bam 42395275 BAM chimeric harmonized CPTAC3 1eff8dbd-e758-4e79-8203-6342e9bdc10c 38ca8fd1fa64a9b0d7478c4534f5311d {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.RNA-Seq.chimeric.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.chimeric.gdc_realn.bam 41484467 BAM chimeric harmonized CPTAC3 d062c2ec-a4d0-4379-b6ef-6a37af822b8a 76c9a78876eec1be07bb5db1c48f9295 {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.RNA-Seq.genomic.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.genomic.gdc_realn.bam 8761427203 BAM genomic harmonized CPTAC3 576a65e7-1d54-4a85-bf3d-d1bee800523b f0c0fecf244e4aee1f557d1017ae563c {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.RNA-Seq.genomic.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.genomic.gdc_realn.bam 8762886714 BAM genomic harmonized CPTAC3 0fcd0843-79ed-4bfe-a7a6-4a40795a2b55 51eb93ebd4c752a5dc2682da5c80c8b2 {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.RNA-Seq.S4_L001_R1.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4049003402 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 25827a14-b2ad-41fb-b8dd-6768b623caf1 ca1672b4ed1135a53b361a6d8f832baf {"aliquot_tag": "ALQ_3c22566a", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.RNA-Seq.S4_L001_R2.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4368896323 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 bdd23eab-0f72-4c4e-aacb-24b6eaba8131 62b0999b9aa9e524460fae3eb5c12a81 {"aliquot_tag": "ALQ_3c22566a", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.RNA-Seq.S6_L002_R1.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4010947559 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 511c6e23-9d06-4168-9d02-99fb2a748947 2f46949c2da7ca4fcc142014c7edf52e {"aliquot_tag": "ALQ_26258cef", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.RNA-Seq.S6_L002_R2.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4325395313 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 3f00c79a-19e8-4faf-ad11-34dab3add995 d6362cb3c264e3cdc3c68191804b0e95 {"aliquot_tag": "ALQ_26258cef", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.RNA-Seq.transcriptome.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.transcriptome.gdc_realn.bam 11169638822 BAM transcriptome harmonized CPTAC3 6723b6d3-bd49-4b6f-93d5-98038ac091fd c6766d989f01fc730ed0cfeaaef242ec {"aliquot_tag": "ALQ_3c22566a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.RNA-Seq.transcriptome.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.transcriptome.gdc_realn.bam 9419721038 BAM transcriptome harmonized CPTAC3 d619d0f8-5180-4e05-bc11-af755cd38d64 39d53a11afb5f0ad789c2124aa3b0631 {"aliquot_tag": "ALQ_26258cef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.WGS.N C3N-02757 LUAD WGS blood_normal CPT0184000002 CPT0184000002.WholeGenome.RP-1303.bam 55078150347 BAM submitted_aligned CPTAC3 c33094cd-a08b-4e2f-89a9-22decba73274 09b4eece50d53e21c3571bf34652b529 {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02757.WGS.N.hg38 C3N-02757 LUAD WGS blood_normal CPT0184000002 1d3373a4-7c6e-4b32-8c95-5c5d13732f8f_wgs_gdc_realn.bam 79860273318 BAM harmonized CPTAC3 968912ef-7aff-4502-84d1-0e624131de72 473272ee7ad13cf94f61291525d05d9c {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02757.WGS.T C3N-02757 LUAD WGS tumor CPT0183940007 CPT0183940007.WholeGenome.RP-1303.bam 125566658657 BAM submitted_aligned CPTAC3 5f210d4a-38eb-41b7-807b-ff4e2a973f10 ee9eba6b5ee2f464d32d4fc50d61ff38 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.WGS.T.hg38 C3N-02757 LUAD WGS tumor CPT0183940007 01b72768-f8ec-487d-9c45-6c61b9b61f4f_wgs_gdc_realn.bam 180098716615 BAM harmonized CPTAC3 05a30cbb-bf33-4c84-abaf-d5909fa711c9 09cf93160c33217e6997fb60aae57f00 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.WXS.A C3N-02757 LUAD WXS tissue_normal CPT0183960006 CPT0183960006.WholeExome.RP-1303.bam 22971198139 BAM submitted_aligned CPTAC3 51454d13-802b-4107-a006-2715764bd979 dff65f45f99cc88a424cdcf6715cfca0 {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.WXS.A.hg38 C3N-02757 LUAD WXS tissue_normal CPT0183960006 0b14a209-d7fb-431d-a7c8-a7c4e0a1af2d_wxs_gdc_realn.bam 31060707478 BAM harmonized CPTAC3 1e025245-8b7c-41dc-8a32-62f4de568447 5999723e15341237188cdcd343c581ab {"aliquot_tag": "ALQ_ac9d4bfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02757.WXS.N C3N-02757 LUAD WXS blood_normal CPT0184000002 CPT0184000002.WholeExome.RP-1303.bam 23129115965 BAM submitted_aligned CPTAC3 b791d3ea-1d61-4c29-af20-7df232b7a34a f38538296d2cc648252cbc7c054229c6 {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02757.WXS.N.hg38 C3N-02757 LUAD WXS blood_normal CPT0184000002 1d3373a4-7c6e-4b32-8c95-5c5d13732f8f_wxs_gdc_realn.bam 31848544315 BAM harmonized CPTAC3 d298a4fd-d84a-4353-8edb-bf285b0608aa 8616898ef9b57cc0f7e50cc46091e32d {"aliquot_tag": "ALQ_c6181504", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02757.WXS.T C3N-02757 LUAD WXS tumor CPT0183940007 CPT0183940007.WholeExome.RP-1303.bam 25455502287 BAM submitted_aligned CPTAC3 216b4634-87cb-4d40-8562-4f47c4c9bd28 d72413f4ab5c135a93ebc6177c064f51 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02757.WXS.T.hg38 C3N-02757 LUAD WXS tumor CPT0183940007 01b72768-f8ec-487d-9c45-6c61b9b61f4f_wxs_gdc_realn.bam 34740232079 BAM harmonized CPTAC3 f5940ec8-4b9f-4a4b-b045-7d3150619951 e7ba9ec9471e8b3f1ba28c62604bb5d0 {"aliquot_tag": "ALQ_a15a280d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.MethArray.Green.A C3N-02758 LUAD Methylation_Array tissue_normal CPT0184060006 203219670141_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7eff8ade-d92e-45a3-8ea7-9100149b7d7f fd0c16dcc41eb4fd30e6dc127f94d92b {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.MethArray.Green.T C3N-02758 LUAD Methylation_Array tumor CPT0184040007 203220070217_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 656efa01-9f06-47a0-a180-4ef2ef238678 47e40ad98d938aac2f65f703b1c00cd5 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.MethArray.Red.A C3N-02758 LUAD Methylation_Array tissue_normal CPT0184060006 203219670141_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 3bce2e95-a142-49ff-845f-259eaf31b5ee 77dc6b83729072a1d7ef8d108c6efedc {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.MethArray.Red.T C3N-02758 LUAD Methylation_Array tumor CPT0184040007 203220070217_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 2b82f2d1-2803-49e1-bbab-4c966fd7cb44 435458e95edbfe1c5afe88afce53ff15 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.miRNA-Seq.A.hg38 C3N-02758 LUAD miRNA-Seq tissue_normal CPT0184060009 e0a1786a-13de-4b8a-bbf4-6265b75df6c9_mirnaseq_gdc_realn.bam 196932309 BAM harmonized CPTAC3 eed0533b-d330-4977-8c60-fffca12ee7d9 c0adf6826034b157a4f24431a55b3edf {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.miRNA-Seq.S35_L007_R1.T C3N-02758 LUAD miRNA-Seq tumor CPT0184040010 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L007_R1_001.unaln.bam 242404839 BAM S35_L007_R1 submitted_unaligned CPTAC3 162906f3-34d6-4d09-bfa8-789af26cd4c1 ce3db5922578105821d56bb3361c3cab {"aliquot_tag": "ALQ_c48de3a9", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.miRNA-Seq.S6_L008_R1.A C3N-02758 LUAD miRNA-Seq tissue_normal CPT0184060009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACAGTG_S6_L008_R1_001.unaln.bam 178879055 BAM S6_L008_R1 submitted_unaligned CPTAC3 926eab70-03dc-41fc-816e-5b78adcfc024 356ec19b81c10a2358645d2883c45c43 {"aliquot_tag": "ALQ_de8a392c", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.miRNA-Seq.T.hg38 C3N-02758 LUAD miRNA-Seq tumor CPT0184040010 bf15b20a-18a1-49b3-9cc8-82595425d8de_mirnaseq_gdc_realn.bam 265237117 BAM harmonized CPTAC3 bc4950cf-21fc-4101-9129-b01a3b4e891c e57b47930f048689b9be3ff8b7542e19 {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.RNA-Seq.chimeric.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.chimeric.gdc_realn.bam 368282589 BAM chimeric harmonized CPTAC3 9cf40df9-a76e-480d-b793-ce4a332f5e04 27df2b33b1a1aeb17af4a6a47a81c106 {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.RNA-Seq.chimeric.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.chimeric.gdc_realn.bam 54666016 BAM chimeric harmonized CPTAC3 b239c5f2-6924-45f9-8583-f8d067c8c5ff c4114776ac4501dd3a582c93501646eb {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.RNA-Seq.genomic.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.genomic.gdc_realn.bam 8931842697 BAM genomic harmonized CPTAC3 de5fa054-86ee-45a1-8bd5-8985962ff0ee 574a6c2b1fc32219a79d59686ac753bc {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.RNA-Seq.genomic.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.genomic.gdc_realn.bam 9935531951 BAM genomic harmonized CPTAC3 e10ebba3-fb4f-46ff-b00c-635254cf16f7 ddf85a4a8cbf95660c6788e8c3421455 {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.RNA-Seq.S3_L008_R1.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R1_001.fastq.gz 3802919682 FASTQ S3_L008_R1 submitted_unaligned CPTAC3 d1c4f1d6-a577-42ca-aa53-d2b33c30c575 6ee90ecbabbc0d14ed01d08417a25164 {"aliquot_tag": "ALQ_de8a392c", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.RNA-Seq.S3_L008_R2.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R2_001.fastq.gz 4225377601 FASTQ S3_L008_R2 submitted_unaligned CPTAC3 c5d599ab-174b-4a33-897c-42616b24ebf5 e342a870c99196af08f304f7e0d780a5 {"aliquot_tag": "ALQ_de8a392c", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.RNA-Seq.S8_L002_R1.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4416157129 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 46f20b1d-f087-43d0-a706-312864f2bb2d 39891ab0f1a3a4ea093969cca8a184c4 {"aliquot_tag": "ALQ_c48de3a9", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.RNA-Seq.S8_L002_R2.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 5020616367 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 fd7cde66-28d7-4004-8c4c-c10ff1681c6a 2bbead0e27f9e8cdd91c3e9e706fb441 {"aliquot_tag": "ALQ_c48de3a9", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.RNA-Seq.transcriptome.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.transcriptome.gdc_realn.bam 8499803193 BAM transcriptome harmonized CPTAC3 40e9c353-260e-4e0f-a729-d09abd4a2573 7b327965dedacf5e2390a69e43e2abae {"aliquot_tag": "ALQ_de8a392c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.RNA-Seq.transcriptome.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.transcriptome.gdc_realn.bam 10156671059 BAM transcriptome harmonized CPTAC3 e404ae6c-e1aa-4ff3-83de-753d3e1f08ee d7bd7de419d362dca3f31bd5f353681a {"aliquot_tag": "ALQ_c48de3a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.WGS.N C3N-02758 LUAD WGS blood_normal CPT0184100002 CPT0184100002.WholeGenome.RP-1303.bam 54245059817 BAM submitted_aligned CPTAC3 a596b2c4-406a-4f01-93fc-7e426ecddd6c ec79261dae031ce529a06100288dd509 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02758.WGS.N.hg38 C3N-02758 LUAD WGS blood_normal CPT0184100002 05fdd306-6939-4645-b421-896b80d20cc7_wgs_gdc_realn.bam 78545686844 BAM harmonized CPTAC3 36d5e66c-eb4b-4e07-bd17-0eb4cdc08dde 681e3272e25a5173238c1cd1b5c270d1 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02758.WGS.T C3N-02758 LUAD WGS tumor CPT0184040007 CPT0184040007.WholeGenome.RP-1303.bam 118725639041 BAM submitted_aligned CPTAC3 05dc4d7e-8dcf-4f52-84ea-7f31ca92b436 cb5c2d2d4827fcd4b1af527199f56218 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.WGS.T.hg38 C3N-02758 LUAD WGS tumor CPT0184040007 aa3c1897-0ed9-472d-a378-97ccfabcbd13_wgs_gdc_realn.bam 174417856508 BAM harmonized CPTAC3 f512018c-3737-4cc4-b55d-082e29c91b96 ceb3aafa803ad698757384078d303f57 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.WXS.A C3N-02758 LUAD WXS tissue_normal CPT0184060006 CPT0184060006.WholeExome.RP-1303.bam 24562757364 BAM submitted_aligned CPTAC3 3ce6e114-5948-4c96-9cd0-59e0d7cc4b3e 364b62e061df35b4f7b5338d507e9377 {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.WXS.A.hg38 C3N-02758 LUAD WXS tissue_normal CPT0184060006 8bf8e25a-a8a7-4c73-a125-5741fecfb264_wxs_gdc_realn.bam 33750924410 BAM harmonized CPTAC3 5ec60580-36d0-4b8d-bbd9-49012b8a871e be010a71faf1b1c4cfd4981f5c232213 {"aliquot_tag": "ALQ_4e3524bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02758.WXS.N C3N-02758 LUAD WXS blood_normal CPT0184100002 CPT0184100002.WholeExome.RP-1303.bam 29546828788 BAM submitted_aligned CPTAC3 3858a92d-082d-4e3b-a629-f2c5f8231e25 3099d318fca07c55b32fea12f7552679 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02758.WXS.N.hg38 C3N-02758 LUAD WXS blood_normal CPT0184100002 05fdd306-6939-4645-b421-896b80d20cc7_wxs_gdc_realn.bam 40562489474 BAM harmonized CPTAC3 e198681a-c62b-4d8c-942b-04aceec8117c 3170a91d62acbbdfb198eb137c121312 {"aliquot_tag": "ALQ_d44c6a1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02758.WXS.T C3N-02758 LUAD WXS tumor CPT0184040007 CPT0184040007.WholeExome.RP-1303.bam 24802307018 BAM submitted_aligned CPTAC3 22bfcefd-60aa-4886-9997-bce81fff6245 12c0c13577a6ba7a391a5b9b8c3f0694 {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02758.WXS.T.hg38 C3N-02758 LUAD WXS tumor CPT0184040007 aa3c1897-0ed9-472d-a378-97ccfabcbd13_wxs_gdc_realn.bam 33844999529 BAM harmonized CPTAC3 99419f71-0888-4a16-9b6c-769fd1f5d255 946709c729df58985d91c32efaba772e {"aliquot_tag": "ALQ_43f2474b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.MethArray.Green.T C3N-02761 CCRCC Methylation_Array tumor CPT0184140007 203219650136_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f01cf032-fef6-43f4-b37e-6af43190dc62 dc52359cfdb2b4e382c4168556c63987 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.MethArray.Red.T C3N-02761 CCRCC Methylation_Array tumor CPT0184140007 203219650136_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 c3395272-d5cc-4ff6-981b-01838e8724db 64cc84d74a54f686b8da6d1859963e72 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.miRNA-Seq.S44_L005_R1.T C3N-02761 CCRCC miRNA-Seq tumor CPT0184140009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L005_R1_001.unaln.bam 260189612 BAM S44_L005_R1 submitted_unaligned CPTAC3 567e837d-4038-4e47-a19d-908d78ea537a 5ad55b63831c138537d36adb5628e486 {"aliquot_tag": "ALQ_6f16b9e9", "sample": "S44", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.miRNA-Seq.T.hg38 C3N-02761 CCRCC miRNA-Seq tumor CPT0184140009 f897e7ed-f385-4f16-b14b-48fb32b68981_mirnaseq_gdc_realn.bam 290135199 BAM harmonized CPTAC3 ed2852cd-9a02-4c5c-8adc-951d5f9cc19f 96de598f642f292f212a06b368e0c963 {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.RNA-Seq.chimeric.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.chimeric.gdc_realn.bam 30561232 BAM chimeric harmonized CPTAC3 b62c7d4d-d251-4f98-98e6-32ec87e3f132 b067e906cc5626ef13930e2f0e26a065 {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.RNA-Seq.genomic.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.genomic.gdc_realn.bam 6712067680 BAM genomic harmonized CPTAC3 b491cbae-6c92-48d0-a9ad-6b32759eab7f 4042a46f67d8f9f4d246f7102e19e6db {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.RNA-Seq.S4_L001_R1.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3197037971 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 3ba9943f-4dac-4963-be8b-586d06e2d2e9 43880c0b69ea012645ad612a27aba3f8 {"aliquot_tag": "ALQ_6f16b9e9", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.RNA-Seq.S4_L001_R2.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R2_001.fastq.gz 3505311243 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 faf38c61-801e-49cf-b180-441db797ad8d 4b046073d3975ab7b27131b5cf25d0ee {"aliquot_tag": "ALQ_6f16b9e9", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.RNA-Seq.transcriptome.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.transcriptome.gdc_realn.bam 8445666020 BAM transcriptome harmonized CPTAC3 816846b5-0ed7-4e9d-b266-4064aadba8c4 d9715c46dac5897540458765f9f86c31 {"aliquot_tag": "ALQ_6f16b9e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.WGS.N C3N-02761 CCRCC WGS blood_normal CPT0184200002 CPT0184200002.WholeGenome.RP-1303.bam 84372807761 BAM submitted_aligned CPTAC3 72c84c02-360b-47a2-b24c-4abc75fff61a e8837343d340acb0d97c1fabaec4fa1f {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02761.WGS.N.hg38 C3N-02761 CCRCC WGS blood_normal CPT0184200002 8ac61f4c-fbb4-4064-8a3c-6ebb21d820fe_wgs_gdc_realn.bam 121970075617 BAM harmonized CPTAC3 d8f71ee5-3e3c-47ad-a764-513f89e6c472 673423fee832f0adb017e010fad6f47e {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02761.WGS.T C3N-02761 CCRCC WGS tumor CPT0184140007 CPT0184140007.WholeGenome.RP-1303.bam 106341197654 BAM submitted_aligned CPTAC3 60013e08-6152-4f58-9b01-0674ab99aca3 2a312af9e848b49b98cf7357841a50b8 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.WGS.T.hg38 C3N-02761 CCRCC WGS tumor CPT0184140007 e78b1f3b-10e7-4324-9099-6b8e67594c2b_wgs_gdc_realn.bam 154462263616 BAM harmonized CPTAC3 c9dbd8e7-5603-46fc-aada-df23bbb1025e 7f61d9a434c238209286da2488447fd2 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.WXS.N C3N-02761 CCRCC WXS blood_normal CPT0184200002 CPT0184200002.WholeExome.RP-1303.bam 27361127878 BAM submitted_aligned CPTAC3 a3395e77-ec42-419d-83b7-f6916641f48f 6e30a92a963b349c870e72a01d58c033 {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02761.WXS.N.hg38 C3N-02761 CCRCC WXS blood_normal CPT0184200002 8ac61f4c-fbb4-4064-8a3c-6ebb21d820fe_wxs_gdc_realn.bam 37361543551 BAM harmonized CPTAC3 7055265a-1b52-456b-b76b-8c3bd558153b c31802521fb2686892abd4cf313e7b79 {"aliquot_tag": "ALQ_8bd0b40f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02761.WXS.T C3N-02761 CCRCC WXS tumor CPT0184140007 CPT0184140007.WholeExome.RP-1303.bam 23783115835 BAM submitted_aligned CPTAC3 a923faa2-0521-4651-9db0-af4c64199834 e832c4441efae2dfe0181a13ddd869f6 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02761.WXS.T.hg38 C3N-02761 CCRCC WXS tumor CPT0184140007 e78b1f3b-10e7-4324-9099-6b8e67594c2b_wxs_gdc_realn.bam 32136680898 BAM harmonized CPTAC3 1a9c674e-1178-4405-b949-7b4f8db3c30c ff7955071044f9b4ba674014301a7df2 {"aliquot_tag": "ALQ_88ae94ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.MethArray.Green.T C3N-02763 CCRCC Methylation_Array tumor CPT0184240012 203219650211_R08C01_Grn.idat 13676235 IDAT Green NA CPTAC3 10dcc5ee-848d-4b30-89ac-5980918b14c3 afc16fef6932ebca26884516b52ca4c1 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.MethArray.Red.T C3N-02763 CCRCC Methylation_Array tumor CPT0184240012 203219650211_R08C01_Red.idat 13676235 IDAT Red NA CPTAC3 f17ec327-67c4-4090-ab33-1d996098508a 727c91ba716ffc5aa0d158e631cf626e {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.miRNA-Seq.S41_L005_R1.T C3N-02763 CCRCC miRNA-Seq tumor CPT0184240010 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L005_R1_001.unaln.bam 242322712 BAM S41_L005_R1 submitted_unaligned CPTAC3 6777c96b-037b-488d-9de7-0adec155b9f0 c7d51bf4d98e8f320fd02606d5c9fddb {"aliquot_tag": "ALQ_894542a2", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.miRNA-Seq.T.hg38 C3N-02763 CCRCC miRNA-Seq tumor CPT0184240010 06a9a18d-cf25-4ca0-964d-ee101420a829_mirnaseq_gdc_realn.bam 266581041 BAM harmonized CPTAC3 a6c0bb44-8d70-4ab4-b460-723728542863 5df53c51e0c5f1fe0438d5c4474939ba {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.RNA-Seq.chimeric.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.chimeric.gdc_realn.bam 48222922 BAM chimeric harmonized CPTAC3 4c0d83e9-fc42-4b64-a5b3-23e8e38222d4 cdad61aa3f0e559dad805c8269d44181 {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.RNA-Seq.genomic.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.genomic.gdc_realn.bam 8409042230 BAM genomic harmonized CPTAC3 632ba398-bd36-41a3-b477-be9fafc47b18 17cf1b4068e27a92cb627438332886a5 {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.RNA-Seq.S3_L001_R1.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3879862953 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 cf1b18a5-cede-459e-ba03-1803479e8f5b d0c3fd83465e9827fe98840ec8999635 {"aliquot_tag": "ALQ_894542a2", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.RNA-Seq.S3_L001_R2.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4272884821 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 76e5e43f-8bcf-4429-9450-7a2d2903eca7 372a0264b66d702b0435b8a480e0269d {"aliquot_tag": "ALQ_894542a2", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.RNA-Seq.transcriptome.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.transcriptome.gdc_realn.bam 11211408561 BAM transcriptome harmonized CPTAC3 cf51ae1d-f722-42fe-aca3-f3ae126bef12 c49f9df9bfaf865c3c0b6f2d9421f728 {"aliquot_tag": "ALQ_894542a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.WGS.N C3N-02763 CCRCC WGS blood_normal CPT0184300002 CPT0184300002.WholeGenome.RP-1303.bam 51487786011 BAM submitted_aligned CPTAC3 85bed1c5-72f0-4a5f-83d2-87356d7bc01b a704285d72e1aea0e6de0ad778b78d86 {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02763.WGS.N.hg38 C3N-02763 CCRCC WGS blood_normal CPT0184300002 5a2ff964-2739-4720-81e0-a04c493b51c4_wgs_gdc_realn.bam 74913379784 BAM harmonized CPTAC3 2a65e51a-4f6c-464e-89fc-8f4981a7a4dd 3534d50bb8f8b4909400ec9ee439d644 {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02763.WGS.T C3N-02763 CCRCC WGS tumor CPT0184240012 CPT0184240012.WholeGenome.RP-1303.bam 88743332934 BAM submitted_aligned CPTAC3 87a32114-f55f-4458-9e9c-1324ebf0f149 e2aa27a3b7382af51a4ac41d1874a836 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.WGS.T.hg38 C3N-02763 CCRCC WGS tumor CPT0184240012 a71de455-32c2-45d0-88e9-a4f494f543ff_wgs_gdc_realn.bam 128552834935 BAM harmonized CPTAC3 60fdde9d-83b1-473e-a69f-a704b5f6d7b6 a0be9bd8bdd5e83bb846ec8a8dcaa8a5 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.WXS.N C3N-02763 CCRCC WXS blood_normal CPT0184300002 CPT0184300002.WholeExome.RP-1303.bam 26376005451 BAM submitted_aligned CPTAC3 4be46227-4dbb-4689-8bcd-e4d01accb58e 93fb6fbd9a54c177dfefd937e3249e2c {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02763.WXS.N.hg38 C3N-02763 CCRCC WXS blood_normal CPT0184300002 5a2ff964-2739-4720-81e0-a04c493b51c4_wxs_gdc_realn.bam 35831735690 BAM harmonized CPTAC3 481ab115-c5bb-43fb-9269-bce3359aaa93 eb360ec8b218fcd9db6bb138b1848a44 {"aliquot_tag": "ALQ_408c67aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02763.WXS.T C3N-02763 CCRCC WXS tumor CPT0184240012 CPT0184240012.WholeExome.RP-1303.bam 18869045523 BAM submitted_aligned CPTAC3 97d5ff53-defe-48e6-aab2-4800dea69e5c f9761e7d8f78b6bd2719bc762de733e4 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02763.WXS.T.hg38 C3N-02763 CCRCC WXS tumor CPT0184240012 a71de455-32c2-45d0-88e9-a4f494f543ff_wxs_gdc_realn.bam 25870567240 BAM harmonized CPTAC3 f76cb817-7c69-4b31-8c1e-13eb6d8dcdbf 8e2608a0dfb20ff3aa64ceb99ed49f78 {"aliquot_tag": "ALQ_674b238e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.MethArray.Green.A C3N-02764 LUAD Methylation_Array tissue_normal CPT0184340006 203219650177_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a784370a-a410-4995-9a4e-0b53d50add69 52979c2413330be7e73fa6eec19ad56c {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.MethArray.Green.T C3N-02764 LUAD Methylation_Array tumor CPT0184350010 203219650174_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0d72f3c9-8d89-42ad-a191-d489bf847f45 078f2681c583b0eb141a6cbc88f11076 {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.MethArray.Red.A C3N-02764 LUAD Methylation_Array tissue_normal CPT0184340006 203219650177_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 06e57922-04bb-47b1-84ed-e7a8f89e25da 689ce4226d39f45ba3519dd4a9fb811e {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.MethArray.Red.T C3N-02764 LUAD Methylation_Array tumor CPT0184350010 203219650174_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 99d10a16-d4bc-467d-9ea7-ed65172deb0a 2acad47d280d0e89b1424c12a792140e {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.miRNA-Seq.A.hg38 C3N-02764 LUAD miRNA-Seq tissue_normal CPT0184340009 dad34d9b-5343-4854-b1bb-5418dd1daacf_mirnaseq_gdc_realn.bam 241599094 BAM harmonized CPTAC3 d3982410-5c25-4f64-8aad-1d43f3556908 d836db5c038a51b676d54d5c2b0c8050 {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.miRNA-Seq.S28_L007_R1.T C3N-02764 LUAD miRNA-Seq tumor CPT0184350007 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L007_R1_001.unaln.bam 261053833 BAM S28_L007_R1 submitted_unaligned CPTAC3 9e618ba8-05eb-471b-97b8-fa9597569694 829f653756c154759ad7c2818cba36d2 {"aliquot_tag": "ALQ_f8061c55", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.miRNA-Seq.S7_L008_R1.A C3N-02764 LUAD miRNA-Seq tissue_normal CPT0184340009 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L008_R1_001.unaln.bam 217882880 BAM S7_L008_R1 submitted_unaligned CPTAC3 9ed190e5-d802-4120-9ff3-554a9f0e78e0 79da3392630dc381df2097c1ca50f6f6 {"aliquot_tag": "ALQ_22de18e2", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.miRNA-Seq.T.hg38 C3N-02764 LUAD miRNA-Seq tumor CPT0184350007 ee7eac4c-5aef-477e-b436-39608532ae54_mirnaseq_gdc_realn.bam 282752311 BAM harmonized CPTAC3 9565ae8f-8350-4d92-8d40-babbe97ca2c3 4d37bc63c83aa69745bf1d0de72006e9 {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.RNA-Seq.chimeric.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.chimeric.gdc_realn.bam 398158731 BAM chimeric harmonized CPTAC3 10819cd2-8349-4ad5-8aba-5f097239d81d 4c7f163178a258a9a0e8c0f83f3f143a {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.RNA-Seq.chimeric.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.chimeric.gdc_realn.bam 46503355 BAM chimeric harmonized CPTAC3 837d31f8-31a2-4e67-92f9-a38ce3f723ae f27ca997528dc70ae002c78b2658820a {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.RNA-Seq.genomic.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.genomic.gdc_realn.bam 9437111423 BAM genomic harmonized CPTAC3 8112db65-c34e-4a8b-9043-797d05d61d9a d7158e83da613fca34efa9dd16baf63d {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.RNA-Seq.genomic.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.genomic.gdc_realn.bam 9531009107 BAM genomic harmonized CPTAC3 f49dcc74-0d74-4716-a63c-4fcc3612d56c ba24bd293a463f761ff37787b5a75731 {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.RNA-Seq.S2_L008_R1.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R1_001.fastq.gz 3977611664 FASTQ S2_L008_R1 submitted_unaligned CPTAC3 5b1e22db-ad4d-48f4-9542-230fbf50adf9 8e9f35578ee484f430d5059f40ea43b1 {"aliquot_tag": "ALQ_22de18e2", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.RNA-Seq.S2_L008_R2.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R2_001.fastq.gz 4479486696 FASTQ S2_L008_R2 submitted_unaligned CPTAC3 f9876b80-3332-4f2a-9996-075ce2e9810c 70a6f4c1f235a3b65f21f5ad4feafce2 {"aliquot_tag": "ALQ_22de18e2", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.RNA-Seq.S6_L008_R1.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R1_001.fastq.gz 4487412544 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 33743fd4-9138-4827-b68d-88929bc34b1a f01f113e5779df17312b8b8829110950 {"aliquot_tag": "ALQ_f8061c55", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.RNA-Seq.S6_L008_R2.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R2_001.fastq.gz 4408956570 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 a106d61c-210f-4fba-b822-452636328533 45972a920500256c010cf2a9d4c35ce7 {"aliquot_tag": "ALQ_f8061c55", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.RNA-Seq.transcriptome.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.transcriptome.gdc_realn.bam 9672833989 BAM transcriptome harmonized CPTAC3 dca699f6-f9c4-4862-97d5-fbd1a1a242fa 3d13786491c91b82327ddaf6beb6e0ba {"aliquot_tag": "ALQ_22de18e2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.RNA-Seq.transcriptome.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.transcriptome.gdc_realn.bam 11173237390 BAM transcriptome harmonized CPTAC3 55d826fe-6380-4820-9ac0-947d4f761070 9b3540c02f3688d1cebf4b6dce48daee {"aliquot_tag": "ALQ_f8061c55", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.WGS.N C3N-02764 LUAD WGS blood_normal CPT0184400002 CPT0184400002.WholeGenome.RP-1303.bam 52696440353 BAM submitted_aligned CPTAC3 086abff8-7d41-44b4-9758-c68b6fca5ba6 5a81a23a0b9d7f280f9a39a7ebeef3ab {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02764.WGS.N.hg38 C3N-02764 LUAD WGS blood_normal CPT0184400002 668cc3ea-3515-4e22-8c18-23fd22dfbc31_wgs_gdc_realn.bam 75146831636 BAM harmonized CPTAC3 21cfc630-77c8-4a73-b634-aacc83edc896 4a88ae7d5f62464175ce9824e9429e00 {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02764.WGS.T C3N-02764 LUAD WGS tumor CPT0184350010 CPT0184350010.WholeGenome.RP-1303.bam 50400358434 BAM submitted_aligned CPTAC3 c305cb68-65be-4185-a0b0-dd24f23af386 2198059f38361742a56ef6593c185837 {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.WGS.T.hg38 C3N-02764 LUAD WGS tumor CPT0184350010 eaea7605-ec9f-4634-979f-8b8346388609_wgs_gdc_realn.bam 74545361071 BAM harmonized CPTAC3 b2116217-446e-4178-a57a-61d5ba5fb695 185f72948aa079e9cd722fd9f88b6b0c {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.WXS.A C3N-02764 LUAD WXS tissue_normal CPT0184340006 CPT0184340006.WholeExome.RP-1303.bam 40752830584 BAM submitted_aligned CPTAC3 81955cf1-f4de-429b-bf82-c27f48409f1c 055438f44c6ece49ee50762a0b5a71a0 {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.WXS.A.hg38 C3N-02764 LUAD WXS tissue_normal CPT0184340006 34cefe90-eab0-4f06-8e65-9471646cbd1b_wxs_gdc_realn.bam 56578846124 BAM harmonized CPTAC3 970c73b1-887b-4df1-a958-247f3d5e08c3 61fd587d129575e05fe43bbd7fa9144f {"aliquot_tag": "ALQ_b2610573", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02764.WXS.N C3N-02764 LUAD WXS blood_normal CPT0184400002 CPT0184400002.WholeExome.RP-1303.bam 22122655701 BAM submitted_aligned CPTAC3 925c3fa1-1ecf-4f7f-82ab-7252ff7caecf ac4a411b1f9c0313e9c2615486aaa4ec {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02764.WXS.N.hg38 C3N-02764 LUAD WXS blood_normal CPT0184400002 668cc3ea-3515-4e22-8c18-23fd22dfbc31_wxs_gdc_realn.bam 30085370723 BAM harmonized CPTAC3 1d9880d8-f0e9-4c28-ad1e-4b0c121db2bd 0028aaac7d03e158a55f23d246bbe187 {"aliquot_tag": "ALQ_5d895712", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02764.WXS.T C3N-02764 LUAD WXS tumor CPT0184350010 CPT0184350010.WholeExome.RP-1303.bam 21853775270 BAM submitted_aligned CPTAC3 52e6c6d0-af75-452e-9698-8e594d4ac393 d7b3a8f6efe273f410a72995244e811e {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02764.WXS.T.hg38 C3N-02764 LUAD WXS tumor CPT0184350010 eaea7605-ec9f-4634-979f-8b8346388609_wxs_gdc_realn.bam 29818447906 BAM harmonized CPTAC3 f091ceb9-d929-4311-a99e-2d44ff3b90fd ef0d91d72ae453dfae75c441bbe45ce2 {"aliquot_tag": "ALQ_7f79b8b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.ANN_66d7c4ee.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.chimeric.gdc_realn.bam 212029964 BAM chimeric harmonized CPTAC3 24a6d9bd-1104-4990-9b88-7cd8507623ca 1f86388e7cd34b4a761f6bf179408b90 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.ANN_66d7c4ee.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.genomic.gdc_realn.bam 8016339044 BAM genomic harmonized CPTAC3 9b6bfe77-e448-456d-abf0-59976de38cdd 67dfe4d4d0e73ccbeea70cc023405da7 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.ANN_66d7c4ee.RNA-Seq.S11_L007_R1.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R1_001.fastq.gz 3476702923 FASTQ S11_L007_R1 submitted_unaligned CPTAC3 6ed9b2ec-4ae8-40e3-a76c-a358dc9199c2 2596aa9862d456523691404159005811 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.ANN_66d7c4ee.RNA-Seq.S11_L007_R2.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R2_001.fastq.gz 3883224355 FASTQ S11_L007_R2 submitted_unaligned CPTAC3 ec78d64b-29ef-457b-a8ef-e1159a06d851 208816663ed0a0d09f47972a77e21144 {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S11", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.ANN_66d7c4ee.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.transcriptome.gdc_realn.bam 10085856004 BAM transcriptome harmonized CPTAC3 23a0dba5-ea8c-415a-ae9a-0a3dddd014ab 76a1ece727575ac091682d5a696ddedb {"aliquot_tag": "ANN_66d7c4ee", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_17d8912.WXS.T C3N-02765 PDA WXS tumor CPT0184450054 CPT0184450054.WholeExome.RP-1303.bam 37835203105 BAM submitted_aligned CPTAC3 3524f979-43dc-4e22-90a7-d940284a03f0 d6b203460146549fbd742f47f73af56f {"aliquot_tag": "DUP_17d8912", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_17d8912.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450054 46f39431-79cf-4335-beda-d2eb94b2fd97_wxs_gdc_realn.bam 51745092746 BAM harmonized CPTAC3 48c289b8-9604-45e2-a4f8-117b7e9817b0 22500fa22faa2c433e8de5e9d98539df {"aliquot_tag": "DUP_17d8912", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_2d3d1ec8.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.chimeric.gdc_realn.bam 82788099 BAM chimeric harmonized CPTAC3 e83e9b63-87dc-4797-8500-eabf72dc3f6f c5f2f3cab7863223dfde812811f6db6c {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_2d3d1ec8.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.genomic.gdc_realn.bam 9301308723 BAM genomic harmonized CPTAC3 de8e9fcb-be72-4390-ae3f-f16d4824b304 e4b809522b3bd7ad7c44c8ddd920cc29 {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_2d3d1ec8.RNA-Seq.S4_L001_R1.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3329241887 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 838bb493-b2e5-4f62-975e-f6ea4ea8eee6 460e6df0617834576ad02e6bfaf31bcb {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_2d3d1ec8.RNA-Seq.S4_L001_R2.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 3985436345 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 47d05475-2278-4844-81bb-4a30b2cbd3cf a3151146ba3d4dc26c5296d123b358b8 {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_2d3d1ec8.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.transcriptome.gdc_realn.bam 9542210581 BAM transcriptome harmonized CPTAC3 03c1bdef-4fe3-40f6-ab04-902349cd07dd 3bb69536fbe7c159930679f1843729c6 {"aliquot_tag": "DUP_2d3d1ec8", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_767ab984.WXS.T C3N-02765 PDA WXS tumor CPT0184450055 CPT0184450055.WholeExome.RP-1303.bam 27342164261 BAM submitted_aligned CPTAC3 000d31d3-1c1b-489a-aa3d-fb7ca3966905 1afb1b87e76c0ab738528d59b976ce2b {"aliquot_tag": "DUP_767ab984", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_767ab984.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450055 3aa9c329-5382-4d4c-86a2-1f313124b4bb_wxs_gdc_realn.bam 37976633564 BAM harmonized CPTAC3 affe7493-8ec2-48f2-8d77-6684ce189f20 e251a0de335dc73fb679ef208ab6ee2b {"aliquot_tag": "DUP_767ab984", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_96d584b7.WXS.N C3N-02765 PDA WXS blood_normal CPT0184500002 CPT0184500002.WholeExome.RP-1303.bam 25531276256 BAM submitted_aligned CPTAC3 4f8fcbb3-89f2-47f6-9315-d8aa83bfe825 0e03bda4395f17a664cd041d978737bc {"aliquot_tag": "DUP_96d584b7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02765.DUP_96d584b7.WXS.N.hg38 C3N-02765 PDA WXS blood_normal CPT0184500002 0a191209-9e23-48d3-b91e-ca049670f43e_wxs_gdc_realn.bam 36624758075 BAM harmonized CPTAC3 f23b9dea-98a3-4d7a-ae94-4d206805a687 b79529c5600369a397e76bea4010e58d {"aliquot_tag": "DUP_96d584b7", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02765.DUP_9f191cb1.WXS.T C3N-02765 PDA WXS tumor CPT0184450053 CPT0184450053.WholeExome.RP-1303.bam 26075201852 BAM submitted_aligned CPTAC3 01affcd9-9410-41e9-9f30-f80528dca801 5aa29dbd30e8cdb0250acfa8f81f0c7f {"aliquot_tag": "DUP_9f191cb1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_9f191cb1.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450053 b6d39075-48b8-4eff-8838-f4cf2976885d_wxs_gdc_realn.bam 35954402673 BAM harmonized CPTAC3 4bdd173e-8229-40d7-80f9-2dd4b7d63b71 7cd84a4b31f25547a825ae7a936aa512 {"aliquot_tag": "DUP_9f191cb1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_c3337fe4.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.chimeric.gdc_realn.bam 373975523 BAM chimeric harmonized CPTAC3 c06416dd-74f8-4251-9488-6a0e004f694f 3482850a3e6954aa47c188f9f45f3edc {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_c3337fe4.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.genomic.gdc_realn.bam 9949122407 BAM genomic harmonized CPTAC3 a2723a26-d0a3-41ef-9036-d45796d3a4b2 ee748db2a8ee7bcde92a7b75b6359379 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_c3337fe4.RNA-Seq.S15_L004_R1.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 4010817260 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 53cea683-4bc3-49f3-9163-30156838864b 287aefce94294ffa64aee31ea018adc6 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_c3337fe4.RNA-Seq.S15_L004_R2.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4530727151 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 2b3616e5-6792-4b8a-9bb2-d2e6cb2b38f3 87a340e152c6d043975898d42653f804 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_c3337fe4.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.transcriptome.gdc_realn.bam 9716651789 BAM transcriptome harmonized CPTAC3 fcafead0-f9fe-42e2-b7c8-f301ad62a2f2 fc8566744bfb65410fa4437630ecacc4 {"aliquot_tag": "DUP_c3337fe4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02765.DUP_f9e4f171.RNA-Seq.chimeric.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.chimeric.gdc_realn.bam 357842011 BAM chimeric harmonized CPTAC3 ef0952c0-5a50-49d9-bf4e-095c71bb7250 a21e84e381c982ad70543679c38e00c0 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02765.DUP_f9e4f171.RNA-Seq.genomic.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.genomic.gdc_realn.bam 10610949083 BAM genomic harmonized CPTAC3 568f0d83-5776-4b4c-894c-b618a33ea844 f51358a67f6b30d4585252aac469cce5 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02765.DUP_f9e4f171.RNA-Seq.S15_L005_R1.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R1_001.fastq.gz 4512545058 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 0cff2469-c2bc-417b-b5ed-6cd331559f9f fd8e36c54ad376c6f2e4be5f6a694824 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02765.DUP_f9e4f171.RNA-Seq.S15_L005_R2.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R2_001.fastq.gz 4859544750 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 916ae392-05d2-4a2d-9b3a-70b0c6d281c4 934d4cc66b3eb9ed7d13eedea83e07b6 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02765.DUP_f9e4f171.RNA-Seq.transcriptome.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.transcriptome.gdc_realn.bam 12291562333 BAM transcriptome harmonized CPTAC3 e3750c68-9520-474f-9896-30d42bc5274b 52f38701d8eaf2bc05c1c429e3be8bb1 {"aliquot_tag": "DUP_f9e4f171", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.MethArray.Green.A C3N-02768 PDA Methylation_Array tissue_normal CPT0207990007 203561450106_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 49258024-95b7-4330-a311-befb587a75c7 a6bc4e8856db96200598f29b8c3a695a {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.MethArray.Green.T C3N-02768 PDA Methylation_Array tumor CPT0207980008 203561450027_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c7fb07b5-b1f8-4217-ad32-97e5e3787788 ec02ce59cdb9f077de9e219fd90f445b {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.MethArray.Red.A C3N-02768 PDA Methylation_Array tissue_normal CPT0207990007 203561450106_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 795efa34-5e8b-4459-8eca-bf7a61714855 a0ce30ecb5fc6d1d31914f0228d90fd2 {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.MethArray.Red.T C3N-02768 PDA Methylation_Array tumor CPT0207980008 203561450027_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 720e7509-02ee-4641-9065-c127c4a954fc 5da9e00a4b11b9b97390440b1ca19c72 {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.miRNA-Seq.A.hg38 C3N-02768 PDA miRNA-Seq tissue_normal CPT0207990010 3dafe0ca-6f6f-42c3-b9c1-ff9f1fde677f_mirnaseq_gdc_realn.bam 457957758 BAM harmonized CPTAC3 c481af8e-4d88-46df-92e8-c87a1c20cb01 db2d1431ede895cc1e7d676e7bb9489e {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.miRNA-Seq.S25_L003_R1.A C3N-02768 PDA miRNA-Seq tissue_normal CPT0207990010 190813_UNC32-K00270_0196_AH5MCWBBXY_CTATAC_S25_L003_R1_001.unaln.bam 405590479 BAM S25_L003_R1 submitted_unaligned CPTAC3 8627a9ca-64ee-4fad-8c0f-52c76118457b d4016f96415e9400a1ba1b2e69016e0e {"aliquot_tag": "ALQ_c0924b3d", "sample": "S25", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.miRNA-Seq.S8_L004_R1.T C3N-02768 PDA miRNA-Seq tumor CPT0207980011 190712_UNC32-K00270_0192_BH7HL3BBXY_CACTCA_S8_L004_R1_001.unaln.bam 171567831 BAM S8_L004_R1 submitted_unaligned CPTAC3 19e39f9c-0520-4db9-9f62-bec8f7dd3e29 3691749676fc3a23cf46c4727cfc3749 {"aliquot_tag": "ALQ_8af5521b", "sample": "S8", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.miRNA-Seq.T.hg38 C3N-02768 PDA miRNA-Seq tumor CPT0207980011 79a919a6-53da-41e0-8030-b4945f1a8143_mirnaseq_gdc_realn.bam 195297723 BAM harmonized CPTAC3 c369335b-8591-4181-9f67-b5a6951dc60d f2200fd0365a26836b3de0083b0cffa2 {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.RNA-Seq.chimeric.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.chimeric.gdc_realn.bam 39850045 BAM chimeric harmonized CPTAC3 1a49b0e8-206a-4f24-8f0a-44c89b00a93c 57f0b69c29ca35fa3b826d96eb6dae5e {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.RNA-Seq.chimeric.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.chimeric.gdc_realn.bam 30641190 BAM chimeric harmonized CPTAC3 45ff964e-921a-410c-a822-e2952db19653 b29199f604baf4a6021982d2d5d0a697 {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.RNA-Seq.genomic.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.genomic.gdc_realn.bam 10142194346 BAM genomic harmonized CPTAC3 0fca3ff8-76b6-4a80-ac71-e8ae33196cb0 91fadb6aaa7b9f0abcd45ac810d6131f {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.RNA-Seq.genomic.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.genomic.gdc_realn.bam 8514757173 BAM genomic harmonized CPTAC3 eb603f25-beae-493d-a6b2-2d535d99d70b a13b87cb1d9371f6cee4df69d32b2a08 {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.RNA-Seq.S19_L005_R1.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R1_001.fastq.gz 4770279436 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 4e176a56-9f2e-48a9-a58d-e421acfdaa26 c6738b708a5e86d561ed7cab26765dc9 {"aliquot_tag": "ALQ_c0924b3d", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.RNA-Seq.S19_L005_R2.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R2_001.fastq.gz 5361032393 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 bc6b55e2-71e6-4ac3-a02b-764326cc2f3f 3b9c34088d8ca805a2c5afd87711a4ae {"aliquot_tag": "ALQ_c0924b3d", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.RNA-Seq.S3_L001_R1.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 4050847238 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 4c83b96a-e1bc-4db8-a84e-36e8b1b4b7d5 872e23c5fb089ff1e1786e8ffb2dac14 {"aliquot_tag": "ALQ_8af5521b", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.RNA-Seq.S3_L001_R2.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 4337524815 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 2b189e60-6209-49cf-8fca-7760c35b17fc d8719a46df4bce0268477daf5255c0e4 {"aliquot_tag": "ALQ_8af5521b", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.RNA-Seq.transcriptome.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.transcriptome.gdc_realn.bam 11582307489 BAM transcriptome harmonized CPTAC3 607c550f-c958-4300-a999-6205aa41ad55 267ab1c0873eb518f3f2d26fd61cd79c {"aliquot_tag": "ALQ_c0924b3d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.RNA-Seq.transcriptome.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.transcriptome.gdc_realn.bam 11873706716 BAM transcriptome harmonized CPTAC3 a827030b-a617-477e-9426-9a1edd1aa98d 099a70f3d94c8f7aa169896de55c6a2e {"aliquot_tag": "ALQ_8af5521b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.WGS.N C3N-02768 PDA WGS blood_normal CPT0208030002 CPT0208030002.WholeGenome.RP-1303.bam 70333882079 BAM submitted_aligned CPTAC3 a057c24b-90fc-47dc-80ea-94dc37012f76 06bbc1f49784e41595681b7221270053 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02768.WGS.N.hg38 C3N-02768 PDA WGS blood_normal CPT0208030002 9fa77fd6-91c8-42b5-b165-0670047bf431_wgs_gdc_realn.bam 103433157147 BAM harmonized CPTAC3 b3efebb0-eb65-4d3f-a896-7ac121c0795f b54b5192a202c1dac8d9f8cd732e1127 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02768.WGS.T C3N-02768 PDA WGS tumor CPT0207980008 CPT0207980008.WholeGenome.RP-1303.bam 144004398125 BAM submitted_aligned CPTAC3 77a8ffd9-2faf-46d9-812c-623ff95bffc2 69cb2530688357d3d692b4dc7961bddb {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.WGS.T.hg38 C3N-02768 PDA WGS tumor CPT0207980008 4a221fd8-7ce3-4834-b697-89592a156b8d_wgs_gdc_realn.bam 211044525010 BAM harmonized CPTAC3 354f6b40-6b0a-4c56-b626-03010f442883 4b43bb53a60af5385110615d3ccead75 {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.WXS.A C3N-02768 PDA WXS tissue_normal CPT0207990007 CPT0207990007.WholeExome.RP-1303.bam 21690982367 BAM submitted_aligned CPTAC3 e659b148-eb9d-4d17-abcd-7eac794bc124 167227838c871eabdc2d9c0529d5448b {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.WXS.A.hg38 C3N-02768 PDA WXS tissue_normal CPT0207990007 b4ec66f3-5e64-4d19-aada-8b31bcecfcd6_wxs_gdc_realn.bam 29375031302 BAM harmonized CPTAC3 526f5f20-d300-41ad-8644-758770c7ac34 76f17b780ec11522e8cb7fed4057850c {"aliquot_tag": "ALQ_47edefdf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02768.WXS.N C3N-02768 PDA WXS blood_normal CPT0208030002 CPT0208030002.WholeExome.RP-1303.bam 27810681637 BAM submitted_aligned CPTAC3 30c0c757-e701-40c8-9d11-46fce454e4c8 155dc7bd130e806cc0731d18703df6a6 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02768.WXS.N.hg38 C3N-02768 PDA WXS blood_normal CPT0208030002 9fa77fd6-91c8-42b5-b165-0670047bf431_wxs_gdc_realn.bam 38483892632 BAM harmonized CPTAC3 459b4750-5988-457b-802e-11b433855e2c 8ffe4307880a0cc518bf2a292f451f85 {"aliquot_tag": "ALQ_ac7022d0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02768.WXS.T C3N-02768 PDA WXS tumor CPT0207980008 CPT0207980008.WholeExome.RP-1303.bam 43309085034 BAM submitted_aligned CPTAC3 eec2b62d-7e0a-4e7a-abde-135a8b4530f7 7dec304d55973cf4e25797bac92e3745 {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02768.WXS.T.hg38 C3N-02768 PDA WXS tumor CPT0207980008 4a221fd8-7ce3-4834-b697-89592a156b8d_wxs_gdc_realn.bam 60636664920 BAM harmonized CPTAC3 1b09a733-37d7-41c5-8fb3-ac91e8ea69f2 f9f25a175b5894bae207c37f70fa931d {"aliquot_tag": "ALQ_ea32dbfe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.MethArray.Green.T C3N-02769 GBM Methylation_Array tumor CPT0205570009 203219650005_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 626dd0ca-d04d-4927-8a5b-951b146762e4 e387a61ac61d76007ac100d3dab63031 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.MethArray.Red.T C3N-02769 GBM Methylation_Array tumor CPT0205570009 203219650005_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 1bc0a9f6-29f0-4999-a4b8-8e944f14bf72 47fa0a32d63296ffa88a309ab85dd1e3 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.miRNA-Seq.S48_L003_R1.T C3N-02769 GBM miRNA-Seq tumor CPT0205570006 181219_UNC31-K00269_0173_BHYGJJBBXX_CGTACG_S48_L003_R1_001.unaln.bam 254035039 BAM S48_L003_R1 submitted_unaligned CPTAC3 c09925f2-998c-4ff4-a6dd-c00c71cdf053 88df83404114a47dde7105ed942c9393 {"aliquot_tag": "ALQ_6f87b07a", "sample": "S48", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.miRNA-Seq.T.hg38 C3N-02769 GBM miRNA-Seq tumor CPT0205570006 d08d339d-97c4-4ced-b844-de117453286a_mirnaseq_gdc_realn.bam 286581052 BAM harmonized CPTAC3 c701e731-542a-4666-88a6-e9938e05f79b acbddeef25ec5346ede05fc6e6849f73 {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.RNA-Seq.chimeric.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.chimeric.gdc_realn.bam 111023695 BAM chimeric harmonized CPTAC3 63ceaa28-12fc-478a-b04d-3ca175d56ee7 a934ef2794dce3524ea8371b0e79b984 {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.RNA-Seq.genomic.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.genomic.gdc_realn.bam 8108963815 BAM genomic harmonized CPTAC3 adda3032-4354-46dc-9100-fbec3fdecd12 986791f8e3ad8c63a181bbcf6cfdd4c2 {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.RNA-Seq.S32_L007_R1.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R1_001.fastq.gz 3703368298 FASTQ S32_L007_R1 submitted_unaligned CPTAC3 cbcec998-f2ef-4566-bf1d-1ba58e3ec41b d3d55f7bd4c11dda8c93673bf83786fc {"aliquot_tag": "ALQ_6f87b07a", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.RNA-Seq.S32_L007_R2.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R2_001.fastq.gz 3963422980 FASTQ S32_L007_R2 submitted_unaligned CPTAC3 40725a01-9dfe-4cc9-b8fd-93e06c474763 4d1b77109b9e88659ce092f3169e6a69 {"aliquot_tag": "ALQ_6f87b07a", "sample": "S32", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.RNA-Seq.transcriptome.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.transcriptome.gdc_realn.bam 10847506015 BAM transcriptome harmonized CPTAC3 062cfafb-e4c4-4e63-998b-0e1aad22c887 5438c9f764cc085502e964fbfc7aeb2d {"aliquot_tag": "ALQ_6f87b07a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.scRNA-Seq.S1_L003_R1.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R1_001.fastq.gz 11929454541 FASTQ S1_L003_R1 submitted_unaligned CPTAC3 2f89a031-595d-48dd-9a51-370d57ac9c6e ff970a9e16d1f4cb6d91cf1c78a439bc {"aliquot_tag": "ALQ_9892e017", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.scRNA-Seq.S1_L003_R2.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R2_001.fastq.gz 27196649078 FASTQ S1_L003_R2 submitted_unaligned CPTAC3 cba6562b-14a2-4f4c-b4be-0777a59e6481 ab57afb2890b2999b9cb429b48cefac9 {"aliquot_tag": "ALQ_9892e017", "sample": "S1", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.scRNA-Seq.T.hg38 C3N-02769 GBM scRNA-Seq tumor CPT0205570014 possorted_genome_bam.bam 29968048497 BAM harmonized CPTAC3 9fb3b674-788a-4e5b-aca2-1aa637f49ecc 02a4a37e036b58d15a5feaa3570a5d37 {"aliquot_tag": "ALQ_9892e017", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.WGS.N C3N-02769 GBM WGS blood_normal CPT0205620002 CPT0205620002.WholeGenome.RP-1303.bam 64625748534 BAM submitted_aligned CPTAC3 86e332dd-384a-40f4-b6a1-691c9df72b2f 6a6c7a419bd96bb50105963b763d9bc7 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02769.WGS.N.hg38 C3N-02769 GBM WGS blood_normal CPT0205620002 676c0ccc-0273-4827-8d9a-4bf5e7af912c_wgs_gdc_realn.bam 93747243868 BAM harmonized CPTAC3 4c86fc2d-d1dc-44e3-8a3f-a6c8a0ec4811 f5e5e4542f87e7bef7fdd56270052ac1 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02769.WGS.T C3N-02769 GBM WGS tumor CPT0205570009 CPT0205570009.WholeGenome.RP-1303.bam 64787894653 BAM submitted_aligned CPTAC3 fddbda1a-4f41-40b3-aabf-b0c117753fa1 d99292496ec8a1787fdc8f0e36a2adba {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.WGS.T.hg38 C3N-02769 GBM WGS tumor CPT0205570009 050dc740-1aaa-40ad-82f6-c15b43a2975e_wgs_gdc_realn.bam 94824522937 BAM harmonized CPTAC3 41f74072-2efe-4386-8eaf-af7e237a5210 bb8cee1e6e2c751256adaf6f30df1670 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.WXS.N C3N-02769 GBM WXS blood_normal CPT0205620002 CPT0205620002.WholeExome.RP-1303.bam 27666664087 BAM submitted_aligned CPTAC3 ec1de81f-110b-412e-bfca-bea46c4e9451 53c62e196680bb524f2358ecc8324fa8 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02769.WXS.N.hg38 C3N-02769 GBM WXS blood_normal CPT0205620002 676c0ccc-0273-4827-8d9a-4bf5e7af912c_wxs_gdc_realn.bam 38068684893 BAM harmonized CPTAC3 ed6b5bb1-8c97-4511-a72d-f0d77d4ba5f2 e5929e518b4e1e199ace464323730886 {"aliquot_tag": "ALQ_269e89bd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02769.WXS.T C3N-02769 GBM WXS tumor CPT0205570009 CPT0205570009.WholeExome.RP-1303.bam 28096687148 BAM submitted_aligned CPTAC3 6a2074bb-9ec3-4f32-ac15-f5a79314a180 908970eefdd2d454750e1426ca783392 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02769.WXS.T.hg38 C3N-02769 GBM WXS tumor CPT0205570009 050dc740-1aaa-40ad-82f6-c15b43a2975e_wxs_gdc_realn.bam 39369064147 BAM harmonized CPTAC3 6ed3227e-5bac-41b5-9ee9-b19d898fc78c 23772f1cc0bbaaf2b9b2f344f0ed0112 {"aliquot_tag": "ALQ_ff38adeb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.MethArray.Green.T C3N-02770 GBM Methylation_Array tumor CPT0205670007 203219650165_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 74ea1a4f-36f5-487a-90a3-4ab46f6ccec5 a1bb2994c2412caebd54efa5ce0094a2 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.MethArray.Red.T C3N-02770 GBM Methylation_Array tumor CPT0205670007 203219650165_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 ed1d3f60-0ab0-4a39-86a2-0a2a290edde0 3bf4d54872a096a3906a1c49b994934f {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.miRNA-Seq.S13_L007_R1.T C3N-02770 GBM miRNA-Seq tumor CPT0205670010 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L007_R1_001.unaln.bam 202252234 BAM S13_L007_R1 submitted_unaligned CPTAC3 913e38f8-e319-4b1c-8776-4ae9a004df03 e9d485333ce408bcaa762a53b085920c {"aliquot_tag": "ALQ_196b56a0", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.miRNA-Seq.T.hg38 C3N-02770 GBM miRNA-Seq tumor CPT0205670010 dbe3bd7c-a40c-430e-800c-210cf7e14ade_mirnaseq_gdc_realn.bam 230870552 BAM harmonized CPTAC3 fa798133-34e0-4e14-8132-b78d5a4ef489 6972de2872e14549eae94dd82d4ccf81 {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.RNA-Seq.chimeric.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.chimeric.gdc_realn.bam 37388444 BAM chimeric harmonized CPTAC3 2c90f971-f9b8-474c-a74c-dd68280e2146 097854ff6caea754923d28d3621ae52c {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.RNA-Seq.genomic.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.genomic.gdc_realn.bam 7634839395 BAM genomic harmonized CPTAC3 fed3fb5b-d5ea-4bc0-9912-29fbf60cc498 e00ab6fdb3a2422a3c17f4f8b4ec7ee4 {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.RNA-Seq.S16_L004_R1.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R1_001.fastq.gz 3798161751 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 2f596c58-f44c-4a43-b9f7-f3caad62afda fbf29e304ca783feb67dab5805ad482d {"aliquot_tag": "ALQ_196b56a0", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.RNA-Seq.S16_L004_R2.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R2_001.fastq.gz 3879586459 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 30939cd9-df0f-496b-9e3e-72413f3cd919 cba4fab46f5d92a57923b5388f41d98e {"aliquot_tag": "ALQ_196b56a0", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.RNA-Seq.transcriptome.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.transcriptome.gdc_realn.bam 10670501385 BAM transcriptome harmonized CPTAC3 d1951494-85ed-4cb1-98bb-0321d1406421 991e17b652bc361e7b9ac188a7415269 {"aliquot_tag": "ALQ_196b56a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.WGS.N C3N-02770 GBM WGS blood_normal CPT0205730002 CPT0205730002.WholeGenome.RP-1303.bam 57041246095 BAM submitted_aligned CPTAC3 73c2d70d-5406-4628-a331-40bc2f68c62c 54545d285bf85c062a05754767a64b0d {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02770.WGS.N.hg38 C3N-02770 GBM WGS blood_normal CPT0205730002 d65d3c63-2d38-4f5d-bc55-24ecea87bd4a_wgs_gdc_realn.bam 82940467860 BAM harmonized CPTAC3 2e5b6969-dfbf-4b57-8d15-d7d1fe9a4e85 5f936c8b0afbb558128c934e8617fadd {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02770.WGS.T C3N-02770 GBM WGS tumor CPT0205670007 CPT0205670007.WholeGenome.RP-1303.bam 62311334890 BAM submitted_aligned CPTAC3 dab5872c-e9ad-4546-9247-0cbc88d3eed0 e44b97fadc605261060077fe3147b9ba {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.WGS.T.hg38 C3N-02770 GBM WGS tumor CPT0205670007 0a1ff17e-ea71-4c3f-93dc-61f1e4a527a4_wgs_gdc_realn.bam 92032213243 BAM harmonized CPTAC3 fe589dfe-5b7a-44fd-ab3c-61586bf9901b 39971bd2143dd942c92be216c2a163d4 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.WXS.N C3N-02770 GBM WXS blood_normal CPT0205730002 CPT0205730002.WholeExome.RP-1303.bam 26203373453 BAM submitted_aligned CPTAC3 d288da1c-504b-44b6-89bd-de0a8df59660 c49f0b709837763344d0620403b57700 {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02770.WXS.N.hg38 C3N-02770 GBM WXS blood_normal CPT0205730002 d65d3c63-2d38-4f5d-bc55-24ecea87bd4a_wxs_gdc_realn.bam 36878958640 BAM harmonized CPTAC3 21e0448c-3eeb-4dd5-aa10-39d50ac4b0b7 09fa38dcae28f6d43497388a32f6e5e3 {"aliquot_tag": "ALQ_d0a273a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02770.WXS.T C3N-02770 GBM WXS tumor CPT0205670007 CPT0205670007.WholeExome.RP-1303.bam 28747589244 BAM submitted_aligned CPTAC3 04cffcfb-e7bd-4f32-8acb-a21272a7da6c 39b5fb4d6863ffee97139d945cb2c5d1 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02770.WXS.T.hg38 C3N-02770 GBM WXS tumor CPT0205670007 0a1ff17e-ea71-4c3f-93dc-61f1e4a527a4_wxs_gdc_realn.bam 39246370184 BAM harmonized CPTAC3 af3be973-9cef-4457-abd3-177f6535febe 2d6d0401fc75847f17edb47e67f7ed07 {"aliquot_tag": "ALQ_9e14f242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.MethArray.Green.T C3N-02782 GBM Methylation_Array tumor CPT0205780009 203219670217_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 15f02c35-0b63-433b-874f-01f496fa39a7 eb93ba20cca4cd8d0f41a2c11f1a435b {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.MethArray.Red.T C3N-02782 GBM Methylation_Array tumor CPT0205780009 203219670217_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 12422174-1ab0-40a7-9d6d-5a65f8ae0d6f 389b4854e05e4369e446541953888854 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.miRNA-Seq.S22_L003_R1.T C3N-02782 GBM miRNA-Seq tumor CPT0205780006 181219_UNC31-K00269_0173_BHYGJJBBXX_GAGTGG_S22_L003_R1_001.unaln.bam 294393905 BAM S22_L003_R1 submitted_unaligned CPTAC3 63ab6eff-607c-43e8-9149-c597fbac7b9b 82aa14911adc060b91d5ca7c074fb422 {"aliquot_tag": "ALQ_a01f86a0", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.miRNA-Seq.T.hg38 C3N-02782 GBM miRNA-Seq tumor CPT0205780006 a4603ea2-4ce7-42ac-be27-f80bc0f56f16_mirnaseq_gdc_realn.bam 325902182 BAM harmonized CPTAC3 39c4b637-e6fa-4b64-a64a-0d60f34a5463 a6f44fdb84e20e4e0ef782e2b1a958d0 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.RNA-Seq.chimeric.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.chimeric.gdc_realn.bam 131933571 BAM chimeric harmonized CPTAC3 5df271bc-bd87-46eb-a247-af68a5ea31b8 379f9a49c1ad3cdd8d9b1cad7b6668d6 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.RNA-Seq.genomic.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.genomic.gdc_realn.bam 8310225994 BAM genomic harmonized CPTAC3 2c91e52f-55d6-41bb-8f6b-e7e4a4744495 d9e4bc7907864c198691bc37069b4055 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.RNA-Seq.S2_L007_R1.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R1_001.fastq.gz 3897476431 FASTQ S2_L007_R1 submitted_unaligned CPTAC3 8d556ee9-fb15-4daf-a9c7-a9aa6ea0363c 06a27ad2266ae027ac3d120e4fb9726b {"aliquot_tag": "ALQ_a01f86a0", "sample": "S2", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.RNA-Seq.S2_L007_R2.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4236088268 FASTQ S2_L007_R2 submitted_unaligned CPTAC3 4a3cbab9-db7b-4383-be3a-5bcc22259575 e560501f73f413304232d1486923b955 {"aliquot_tag": "ALQ_a01f86a0", "sample": "S2", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.RNA-Seq.transcriptome.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.transcriptome.gdc_realn.bam 11563450198 BAM transcriptome harmonized CPTAC3 476d11ee-feb9-40c5-a2ba-b9d9d5a50bd8 5ce31ab9ab318070d0b7d0a7f83c71d1 {"aliquot_tag": "ALQ_a01f86a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.WGS.N C3N-02782 GBM WGS blood_normal CPT0205800002 CPT0205800002.WholeGenome.RP-1303.bam 61479019998 BAM submitted_aligned CPTAC3 2d9ca192-dc4e-4d54-b48e-38b8354cbdca 3e7c7bf839f22d0bb6742cb04a7f4e04 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02782.WGS.N.hg38 C3N-02782 GBM WGS blood_normal CPT0205800002 45512723-7706-4e43-aa40-d483af74b7a9_wgs_gdc_realn.bam 89558603666 BAM harmonized CPTAC3 5e3b93d6-8e8c-4fa4-89a1-004c6d032737 895400f14a600824f6b4ce3947a0a386 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02782.WGS.T C3N-02782 GBM WGS tumor CPT0205780009 CPT0205780009.WholeGenome.RP-1303.bam 60586673010 BAM submitted_aligned CPTAC3 c1c90346-e31f-4563-956a-fbc18965d00a 4b51d5324b43b767d25ed7a4d63bbe95 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.WGS.T.hg38 C3N-02782 GBM WGS tumor CPT0205780009 15dabb25-eb64-454a-89cb-ebf80f2d9dcb_wgs_gdc_realn.bam 88779998417 BAM harmonized CPTAC3 6ddf6a3d-d3fe-4d9c-af11-34d34525204d 8d56c31b7cdfccfaf234a0c9bc1fedb6 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.WXS.N C3N-02782 GBM WXS blood_normal CPT0205800002 CPT0205800002.WholeExome.RP-1303.bam 22100109478 BAM submitted_aligned CPTAC3 61f9f295-e0d1-4350-aa33-1dbe1760ca14 836156a2d7ec07bc071c3884572e78b1 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02782.WXS.N.hg38 C3N-02782 GBM WXS blood_normal CPT0205800002 45512723-7706-4e43-aa40-d483af74b7a9_wxs_gdc_realn.bam 31294667480 BAM harmonized CPTAC3 75fd925e-975a-4ab6-acc4-dfe9a64363f0 7920252cfd6fac99cfba6fe9068efd07 {"aliquot_tag": "ALQ_6654bbad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02782.WXS.T C3N-02782 GBM WXS tumor CPT0205780009 CPT0205780009.WholeExome.RP-1303.bam 20767505801 BAM submitted_aligned CPTAC3 bbaf0843-d128-4c61-b784-a673e61f4bcf 94a9921a0853c35c3daa97822d788b4f {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02782.WXS.T.hg38 C3N-02782 GBM WXS tumor CPT0205780009 15dabb25-eb64-454a-89cb-ebf80f2d9dcb_wxs_gdc_realn.bam 28734930383 BAM harmonized CPTAC3 5c013895-4b36-4a27-b4f5-dc9693a8682c b7380c3a8263be1d74247dff1a56ba16 {"aliquot_tag": "ALQ_30a09b31", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.MethArray.Green.T C3N-02783 GBM Methylation_Array tumor CPT0205890009 203219650136_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f4a494ec-df57-43b1-9252-2efbed56c339 63179bb3d1e420fb8089f9fff4affdfb {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.MethArray.Red.T C3N-02783 GBM Methylation_Array tumor CPT0205890009 203219650136_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 cccf45d5-8624-4e3d-a6b2-98fc85f82602 12e5f4cd83588d4d18911ed79a9d953d {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.miRNA-Seq.S23_L003_R1.T C3N-02783 GBM miRNA-Seq tumor CPT0205890006 181219_UNC31-K00269_0173_BHYGJJBBXX_GGTAGC_S23_L003_R1_001.unaln.bam 229328168 BAM S23_L003_R1 submitted_unaligned CPTAC3 04fb82de-277b-491a-bc65-20fb25ddbae4 27ab2cc7f0ede0a5d7e77f580851a4e7 {"aliquot_tag": "ALQ_6c291dc5", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.miRNA-Seq.T.hg38 C3N-02783 GBM miRNA-Seq tumor CPT0205890006 4902e5f2-7c34-4702-bfb7-b13f494510ab_mirnaseq_gdc_realn.bam 255907588 BAM harmonized CPTAC3 e45345a9-10bc-44a5-adb8-b121f2f0881d c53c35a9b556b989a931f887d4a44b5f {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.RNA-Seq.chimeric.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.chimeric.gdc_realn.bam 80326276 BAM chimeric harmonized CPTAC3 71850072-1a7c-4529-81f7-b0b5bb5c57c0 af48fc05029252dea74ab931c394e62a {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.RNA-Seq.genomic.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.genomic.gdc_realn.bam 8915454516 BAM genomic harmonized CPTAC3 1fb40b3e-6dcb-43a1-86ac-94b2cac02d75 6f552834369a4709e0f5d20d9a6abf25 {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.RNA-Seq.S33_L007_R1.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R1_001.fastq.gz 4153563527 FASTQ S33_L007_R1 submitted_unaligned CPTAC3 c3a28258-46f8-4363-98f0-72ce38f840c2 dbe09bf17d337a0f2c32b0b4a38b9d4f {"aliquot_tag": "ALQ_6c291dc5", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.RNA-Seq.S33_L007_R2.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R2_001.fastq.gz 4420035565 FASTQ S33_L007_R2 submitted_unaligned CPTAC3 300ad88a-1572-4def-8832-9972ddf4c133 22f30fcbe74b386b3d93b76034f43e7e {"aliquot_tag": "ALQ_6c291dc5", "sample": "S33", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.RNA-Seq.transcriptome.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.transcriptome.gdc_realn.bam 11971926251 BAM transcriptome harmonized CPTAC3 37791d6e-816c-4f15-b306-ccbdca90c586 645f824872212f2927472f607b8fcffb {"aliquot_tag": "ALQ_6c291dc5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.scRNA-Seq.S3_L001_R1.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R1_001.fastq.gz 7681086081 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 98e869a4-4485-4e92-a24e-e3edf83fcc1c 2b1ea372edff2273cf2f97521975fa6a {"aliquot_tag": "ALQ_9b3c4da8", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.scRNA-Seq.S3_L001_R2.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R2_001.fastq.gz 18013082534 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 1c44a09d-a35d-404a-8bba-95d59425b678 81e1e82cd0646be44b47804be228f444 {"aliquot_tag": "ALQ_9b3c4da8", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.scRNA-Seq.T.hg38 C3N-02783 GBM scRNA-Seq tumor CPT0205890014 possorted_genome_bam.bam 22655123367 BAM harmonized CPTAC3 134211a0-bc5e-4b42-ab4f-425517ca00dc 0899977c5ebcd214aa05c4f35e687faf {"aliquot_tag": "ALQ_9b3c4da8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.WGS.N C3N-02783 GBM WGS blood_normal CPT0205950002 CPT0205950002.WholeGenome.RP-1303.bam 54585294438 BAM submitted_aligned CPTAC3 be13a90f-4a0d-4e5f-aaa6-08f583b3f1eb f2b00ea005f2bf9bd848dd5ca82d63a2 {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02783.WGS.N.hg38 C3N-02783 GBM WGS blood_normal CPT0205950002 d3bee3fd-bd2d-4191-ac63-a1f864f33004_wgs_gdc_realn.bam 79064217342 BAM harmonized CPTAC3 0382203c-2b40-4e1c-ba95-a75bfc8347d2 83add3a85b665131dad313f70b44d23d {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02783.WGS.T C3N-02783 GBM WGS tumor CPT0205890009 CPT0205890009.WholeGenome.RP-1303.bam 64343853541 BAM submitted_aligned CPTAC3 b1425615-a9a7-4f39-8bba-64f9b2260ba9 e748ca5dbdae1b2075196085e902173f {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.WGS.T.hg38 C3N-02783 GBM WGS tumor CPT0205890009 924abd02-843a-4fa1-bec8-1a1ce627cd58_wgs_gdc_realn.bam 95551279923 BAM harmonized CPTAC3 2d214547-9d98-41d4-99b2-a95e1457c12e f33dcb2192896f36cf234ac12abe8aa1 {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.WXS.N C3N-02783 GBM WXS blood_normal CPT0205950002 CPT0205950002.WholeExome.RP-1303.bam 23757707725 BAM submitted_aligned CPTAC3 bd74f383-abf3-46fd-9cfd-231a1f1b4e72 48c1252278273b55ff9e75c40165fac3 {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02783.WXS.N.hg38 C3N-02783 GBM WXS blood_normal CPT0205950002 d3bee3fd-bd2d-4191-ac63-a1f864f33004_wxs_gdc_realn.bam 33436241278 BAM harmonized CPTAC3 ff5ef114-0332-494f-9ad4-d48811775380 4de369c3b158c19a85db7ec1fe7c09b9 {"aliquot_tag": "ALQ_65e8e778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02783.WXS.T C3N-02783 GBM WXS tumor CPT0205890009 CPT0205890009.WholeExome.RP-1303.bam 24721933582 BAM submitted_aligned CPTAC3 908fd006-739a-48d2-80b9-20bf18044f9d cc02783e8fb87be0cdaa3ed12166cf80 {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02783.WXS.T.hg38 C3N-02783 GBM WXS tumor CPT0205890009 924abd02-843a-4fa1-bec8-1a1ce627cd58_wxs_gdc_realn.bam 34444612533 BAM harmonized CPTAC3 2da98aa4-5485-4147-a547-760a218b08b3 46c4a839ad2c89b07981841de81697f0 {"aliquot_tag": "ALQ_fc960054", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.MethArray.Green.T C3N-02784 GBM Methylation_Array tumor CPT0206000007 203219650176_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6c842ef5-4783-4a97-83e4-28a4c5164b65 22a8b1d5bfee96b6df2c737299d8cf02 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.MethArray.Red.T C3N-02784 GBM Methylation_Array tumor CPT0206000007 203219650176_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 2d8d9306-615f-4bf5-9713-82abfb36bd7f 149a748a34910047108dd05a9e579aa7 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.miRNA-Seq.S14_L007_R1.T C3N-02784 GBM miRNA-Seq tumor CPT0206000010 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTTCC_S14_L007_R1_001.unaln.bam 275530466 BAM S14_L007_R1 submitted_unaligned CPTAC3 76c5a394-239d-4aa5-9005-86de3583b6a0 17f9be6b88a0f6a407b3ec74df07e40a {"aliquot_tag": "ALQ_4cfa7330", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.miRNA-Seq.T.hg38 C3N-02784 GBM miRNA-Seq tumor CPT0206000010 22be7586-43ec-48f9-aa57-f0de1344df18_mirnaseq_gdc_realn.bam 310486920 BAM harmonized CPTAC3 023b51fa-6d3e-4d6e-8c6f-718390e32428 13a31bd6d86ffe2c57ab66d3e5c68300 {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.RNA-Seq.chimeric.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.chimeric.gdc_realn.bam 37170440 BAM chimeric harmonized CPTAC3 f5a1bbaf-61a0-4a1d-af59-d1e8aeceb0f5 45825647b11fe773d187e67311964448 {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.RNA-Seq.genomic.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.genomic.gdc_realn.bam 7858724464 BAM genomic harmonized CPTAC3 2eba58a6-82c6-4667-969d-b8e2a1f37fbc 393074f2ca1b730d2c9f6b528b1aa2ac {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.RNA-Seq.S3_L005_R1.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R1_001.fastq.gz 3693628695 FASTQ S3_L005_R1 submitted_unaligned CPTAC3 94f26cd4-ffba-4908-ba59-695a852622d4 3469606b893c3f594e563bbabb0b5c2e {"aliquot_tag": "ALQ_4cfa7330", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.RNA-Seq.S3_L005_R2.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R2_001.fastq.gz 3845497765 FASTQ S3_L005_R2 submitted_unaligned CPTAC3 e0b6edbc-145e-4aed-b3c0-64db111763c2 a1cca1ee5f0197d07d8c95b2f70e5987 {"aliquot_tag": "ALQ_4cfa7330", "sample": "S3", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.RNA-Seq.transcriptome.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.transcriptome.gdc_realn.bam 11712215630 BAM transcriptome harmonized CPTAC3 ab4c1381-433a-4d1e-a7cc-feb6849f895f 0dceed5de80231f3e194f8a722bf5c9c {"aliquot_tag": "ALQ_4cfa7330", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.scRNA-Seq.S5_L003_R1.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R1_001.fastq.gz 10247839581 FASTQ S5_L003_R1 submitted_unaligned CPTAC3 82f470cd-a7c4-46dd-ad24-f6ef6ac2fb1f 5be38469d5926812ffec926b76323ee0 {"aliquot_tag": "ALQ_3c9087bf", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.scRNA-Seq.S5_L003_R2.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R2_001.fastq.gz 24870065483 FASTQ S5_L003_R2 submitted_unaligned CPTAC3 51ff95f6-0a5c-495d-b26c-10cf4f66e95f ed342986a988a6bb271887bd53cadbb4 {"aliquot_tag": "ALQ_3c9087bf", "sample": "S5", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.scRNA-Seq.T.hg38 C3N-02784 GBM scRNA-Seq tumor CPT0206000015 possorted_genome_bam.bam 27855697509 BAM harmonized CPTAC3 4cc00a1b-6ee4-4520-a76e-94ea33e09889 de94c65f41e9cb0b966922dbf278eea2 {"aliquot_tag": "ALQ_3c9087bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.WGS.N C3N-02784 GBM WGS blood_normal CPT0206060002 CPT0206060002.WholeGenome.RP-1303.bam 59440566323 BAM submitted_aligned CPTAC3 31df1c04-e901-4b2d-ad1e-19f9f7f6589d ae32b9769b0b50daa23eb6e2ff1b3c43 {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02784.WGS.N.hg38 C3N-02784 GBM WGS blood_normal CPT0206060002 7c5eb1a4-b218-4654-9c46-76f044f69aee_wgs_gdc_realn.bam 86077990346 BAM harmonized CPTAC3 acc13c17-4844-4ecd-88bd-a087db0726d9 c5e0df33a15c810f5d74aa4f213cef14 {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02784.WGS.T C3N-02784 GBM WGS tumor CPT0206000007 CPT0206000007.WholeGenome.RP-1303.bam 57951905117 BAM submitted_aligned CPTAC3 798426df-aa4e-405b-b0df-168c71d52d00 a5b62bcfeb86fa59d1bfc52121ee7c45 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.WGS.T.hg38 C3N-02784 GBM WGS tumor CPT0206000007 42ab100b-26f3-4f26-8be8-ffc20930eb85_wgs_gdc_realn.bam 84594039280 BAM harmonized CPTAC3 547b44f0-795d-4d30-b3ab-1af520a2330f 251c81be1a360247c46e3d05c481bd25 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.WXS.N C3N-02784 GBM WXS blood_normal CPT0206060002 CPT0206060002.WholeExome.RP-1303.bam 24309529081 BAM submitted_aligned CPTAC3 836008ed-f81b-40f9-91ca-466b4d907194 aa4f3267389ff6bed326bd4c26be05f5 {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02784.WXS.N.hg38 C3N-02784 GBM WXS blood_normal CPT0206060002 7c5eb1a4-b218-4654-9c46-76f044f69aee_wxs_gdc_realn.bam 33820261062 BAM harmonized CPTAC3 1c6c584b-f47c-4580-9b78-56360987558d 6e172bcfde5cc022c301131b8923f0da {"aliquot_tag": "ALQ_34afd6fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02784.WXS.T C3N-02784 GBM WXS tumor CPT0206000007 CPT0206000007.WholeExome.RP-1303.bam 24492515196 BAM submitted_aligned CPTAC3 ee06966a-7656-422a-a65d-27e787a99171 72d2b73d3653843366d57558eedfe9d6 {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02784.WXS.T.hg38 C3N-02784 GBM WXS tumor CPT0206000007 42ab100b-26f3-4f26-8be8-ffc20930eb85_wxs_gdc_realn.bam 34098029382 BAM harmonized CPTAC3 9c032411-8dd9-4332-9f85-8362e57efdd0 e305464a14bb832ec3e7e2cf44a2774f {"aliquot_tag": "ALQ_cb85d7d2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.MethArray.Green.T C3N-02785 GBM Methylation_Array tumor CPT0206110009 203219650202_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 899fba07-a866-4ff9-82f6-202b0088eb05 021bf587ed80ce4599ed90d4bb910ccf {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.MethArray.Red.T C3N-02785 GBM Methylation_Array tumor CPT0206110009 203219650202_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 18c2ded9-0805-46d6-8cd0-7dacca8d0bee 1ecfe105b9433286a5e4c8b0e699a892 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.miRNA-Seq.S24_L004_R1.T C3N-02785 GBM miRNA-Seq tumor CPT0206110006 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTGAT_S24_L004_R1_001.unaln.bam 211228057 BAM S24_L004_R1 submitted_unaligned CPTAC3 133d3832-5a37-4e1e-bb3d-936b03082ee8 50cd2eec1302a676d543d6109df5d085 {"aliquot_tag": "ALQ_4abe1d51", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.miRNA-Seq.T.hg38 C3N-02785 GBM miRNA-Seq tumor CPT0206110006 36b97cc7-fd05-4d87-bdfd-6fed119dbb38_mirnaseq_gdc_realn.bam 240017664 BAM harmonized CPTAC3 ee3a92ac-afa8-4bf1-91e7-4d0d17840ca8 efc8d52a8e23bd4756f2f5e20fe154db {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.RNA-Seq.chimeric.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.chimeric.gdc_realn.bam 139193910 BAM chimeric harmonized CPTAC3 e4bafaec-9cb9-4caa-902a-a2865d407ff6 13ef8fbcafff86bca86da60819f21f72 {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.RNA-Seq.genomic.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.genomic.gdc_realn.bam 8403420224 BAM genomic harmonized CPTAC3 c78cc904-2983-46df-9d8b-c247f5460ed5 0ed11252865b8eba14de17bde8351a13 {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.RNA-Seq.S1_L008_R1.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R1_001.fastq.gz 4034452742 FASTQ S1_L008_R1 submitted_unaligned CPTAC3 705ac8ac-ceeb-4500-a7f5-e5dc71df23ca 6183edc73ca2f9c72d1ff87dfe9e0636 {"aliquot_tag": "ALQ_4abe1d51", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.RNA-Seq.S1_L008_R2.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R2_001.fastq.gz 3955844270 FASTQ S1_L008_R2 submitted_unaligned CPTAC3 eb204a8f-a4ac-41da-87dd-661ac14d13cd 1ba568bb12f3248b2ef00efbb4b1e513 {"aliquot_tag": "ALQ_4abe1d51", "sample": "S1", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.RNA-Seq.transcriptome.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.transcriptome.gdc_realn.bam 11455255282 BAM transcriptome harmonized CPTAC3 5193d74b-4a6e-4008-bead-c80b866a70a0 145a008c64a135ebe41536de2265698c {"aliquot_tag": "ALQ_4abe1d51", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.WGS.N C3N-02785 GBM WGS blood_normal CPT0206170002 CPT0206170002.WholeGenome.RP-1303.bam 57158824290 BAM submitted_aligned CPTAC3 e96a4030-bab1-4bde-80d5-ec9e5fcd4fcb 0f482af27a118da3d62b70f614119b80 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02785.WGS.N.hg38 C3N-02785 GBM WGS blood_normal CPT0206170002 f5c9474a-3ec0-4252-bcc4-9d4c12ccb733_wgs_gdc_realn.bam 83206373736 BAM harmonized CPTAC3 ac65cceb-d9c0-4837-a9bc-b7bf0540abac edd49d9effd1794dd81ef026bcfafc76 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02785.WGS.T C3N-02785 GBM WGS tumor CPT0206110009 CPT0206110009.WholeGenome.RP-1303.bam 58209455529 BAM submitted_aligned CPTAC3 abb8615d-c77f-4122-9ffd-218307d5e1b0 0ce8a32dc24e6f0bbf96f49bd5b21fa5 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.WGS.T.hg38 C3N-02785 GBM WGS tumor CPT0206110009 61b9c50a-acd5-420b-8cae-914dd6c29a66_wgs_gdc_realn.bam 84501317011 BAM harmonized CPTAC3 055c8d86-e4a5-4972-acf9-10406750f8fb b6d1656edd4aa64ec8b7d1a2c1d89d0e {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.WXS.N C3N-02785 GBM WXS blood_normal CPT0206170002 CPT0206170002.WholeExome.RP-1303.bam 29454076983 BAM submitted_aligned CPTAC3 be3bbac8-feaa-459e-a38e-5108f67340ff abdca849cbeb76470fe18c74b0af8a64 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02785.WXS.N.hg38 C3N-02785 GBM WXS blood_normal CPT0206170002 f5c9474a-3ec0-4252-bcc4-9d4c12ccb733_wxs_gdc_realn.bam 41425890564 BAM harmonized CPTAC3 520333c4-f6dc-4cfc-bc12-024ecfaa8cee 9c2d9b1097eea9a8a455255e6b5fe5f0 {"aliquot_tag": "ALQ_c2932ce8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02785.WXS.T C3N-02785 GBM WXS tumor CPT0206110009 CPT0206110009.WholeExome.RP-1303.bam 23527117043 BAM submitted_aligned CPTAC3 6f2e7e8c-a285-47a4-a375-054b4d11794f d38fd3eea01576da847555243939a6e4 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02785.WXS.T.hg38 C3N-02785 GBM WXS tumor CPT0206110009 61b9c50a-acd5-420b-8cae-914dd6c29a66_wxs_gdc_realn.bam 32228209996 BAM harmonized CPTAC3 a91ec20c-b6a4-4d0a-bbaf-c4b725597777 e46fcd5c2c3bd05b8ede602cee8df789 {"aliquot_tag": "ALQ_da0100c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.MethArray.Green.T C3N-02786 GBM Methylation_Array tumor CPT0206230006 203219650006_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 10308bc6-a29b-4930-b411-6682344cb415 809bb21d942f7173be5da1be07f34bcf {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.MethArray.Red.T C3N-02786 GBM Methylation_Array tumor CPT0206230006 203219650006_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 af14094c-ad0f-4186-afa8-2e6a5a2567df 8ea1f5714780595b104ad040a5882a7d {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.miRNA-Seq.S33_L008_R1.T C3N-02786 GBM miRNA-Seq tumor CPT0206230009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L008_R1_001.unaln.bam 123467151 BAM S33_L008_R1 submitted_unaligned CPTAC3 fc3d517e-2d36-4d44-a368-3aa8fa15bdda 05608983ef40f579939521dca4d6c140 {"aliquot_tag": "ALQ_2655210e", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.miRNA-Seq.T.hg38 C3N-02786 GBM miRNA-Seq tumor CPT0206230009 c5bc20f2-9463-42ae-9764-29da636702b5_mirnaseq_gdc_realn.bam 143375204 BAM harmonized CPTAC3 1ea5c6ed-9348-4172-b93a-415cc10ef27b 4fcc7525d77cac45ec1e28a3e28a3044 {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.RNA-Seq.chimeric.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.chimeric.gdc_realn.bam 44649931 BAM chimeric harmonized CPTAC3 fddb2d18-62cf-4040-80a7-5010c7021fac 3f959030450e22526074ae4eb3c2eb34 {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.RNA-Seq.genomic.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.genomic.gdc_realn.bam 8848301429 BAM genomic harmonized CPTAC3 51ec9900-90a3-47c2-aa23-25c493fa373c 7e236e6bb6b84603e292ca121a0fad71 {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.RNA-Seq.S32_L008_R1.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R1_001.fastq.gz 4067842049 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 66a24337-0fb5-41bb-bf11-2fcb9a06f88e 82a334f5a30e2a5dc1d354e295627e85 {"aliquot_tag": "ALQ_2655210e", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.RNA-Seq.S32_L008_R2.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R2_001.fastq.gz 4274543264 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 6fd2a712-9c61-4898-8ead-f530d7757699 e79a33aba5fc9e82eefb1634529bfb25 {"aliquot_tag": "ALQ_2655210e", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.RNA-Seq.transcriptome.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.transcriptome.gdc_realn.bam 10253695683 BAM transcriptome harmonized CPTAC3 1abf2e63-a23c-41f9-802e-2d594ef0afae 300238bf4d05de51bd97f5307c9bff1a {"aliquot_tag": "ALQ_2655210e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.WGS.N C3N-02786 GBM WGS blood_normal CPT0206280002 CPT0206280002.WholeGenome.RP-1303.bam 61607903575 BAM submitted_aligned CPTAC3 9463ccfb-46b1-4a4a-b78f-ecafd6281e95 a16a0a3241c16594a8cd20f1f47deefe {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02786.WGS.N.hg38 C3N-02786 GBM WGS blood_normal CPT0206280002 66d7fa25-dd36-444f-be45-50698701694a_wgs_gdc_realn.bam 89406270565 BAM harmonized CPTAC3 8311c988-d841-4323-a7d2-dae23167d9dd ab046d58389160cbbb0b66c62ce3779f {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02786.WGS.T C3N-02786 GBM WGS tumor CPT0206230006 CPT0206230006.WholeGenome.RP-1303.bam 62206339052 BAM submitted_aligned CPTAC3 8ebce501-a905-4c5c-87af-b560f1aefecf aa2374f1d507b3936a5fec437b7d7786 {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.WGS.T.hg38 C3N-02786 GBM WGS tumor CPT0206230006 b169e6e6-a391-4fe4-853c-5b74726d30b5_wgs_gdc_realn.bam 91154226131 BAM harmonized CPTAC3 09a5afba-92a9-4212-8027-41a7474e2b71 824ec9066f78fb1ebea976ce546441a1 {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.WXS.N C3N-02786 GBM WXS blood_normal CPT0206280002 CPT0206280002.WholeExome.RP-1303.bam 22670789223 BAM submitted_aligned CPTAC3 89d26971-bc6d-4f04-a8a1-3b40a63e89c6 248862208e2aa9557d0a92567986cca3 {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02786.WXS.N.hg38 C3N-02786 GBM WXS blood_normal CPT0206280002 66d7fa25-dd36-444f-be45-50698701694a_wxs_gdc_realn.bam 31366491796 BAM harmonized CPTAC3 6dc8a3c2-fcf3-454e-a7ff-c7d68221afe5 28af64d28af8ddc78cdb71eae1ea2363 {"aliquot_tag": "ALQ_c657c997", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02786.WXS.T C3N-02786 GBM WXS tumor CPT0206230006 CPT0206230006.WholeExome.RP-1303.bam 27544379285 BAM submitted_aligned CPTAC3 4aaf1a8b-99be-434e-ac59-5a5a2f2a864a b2c27ab1e78a2d0537279ce1cbb3056d {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02786.WXS.T.hg38 C3N-02786 GBM WXS tumor CPT0206230006 b169e6e6-a391-4fe4-853c-5b74726d30b5_wxs_gdc_realn.bam 38576985968 BAM harmonized CPTAC3 a22d1da6-bddf-4798-b4bd-07a0832c9da1 fce347207dbc2ab3a6b21e2e39e7f535 {"aliquot_tag": "ALQ_b6ea3c9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.MethArray.Green.T C3N-02788 GBM Methylation_Array tumor CPT0206350009 203219650174_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 5669638e-6bc7-4b39-b8a0-320bd26e9035 03be6c29a0ff8e288936e7a8c106021b {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.MethArray.Red.T C3N-02788 GBM Methylation_Array tumor CPT0206350009 203219650174_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 0d3fb5d5-ceab-4dd9-be3a-c7bb00e45db0 691f32a60513b476c140113a121b7e62 {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.miRNA-Seq.S25_L004_R1.T C3N-02788 GBM miRNA-Seq tumor CPT0206350006 181219_UNC31-K00269_0173_BHYGJJBBXX_ATGAGC_S25_L004_R1_001.unaln.bam 212225468 BAM S25_L004_R1 submitted_unaligned CPTAC3 32ffb60a-e650-47d6-8cd1-5b654f13fff0 17c79e85590449a45ffb9333e3a7bd68 {"aliquot_tag": "ALQ_f2f61a9a", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.miRNA-Seq.T.hg38 C3N-02788 GBM miRNA-Seq tumor CPT0206350006 54ef412e-a7e4-4666-b0f3-0107a6a9acc0_mirnaseq_gdc_realn.bam 237797263 BAM harmonized CPTAC3 dac01cac-6b67-4bf0-8ef7-8f5f96fb5b79 74e27b7a1d12a09865a029d58dbd9c9a {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_7db6ef3a.MethArray.Green.T C3N-02788 GBM Methylation_Array tumor CPT0206330006 203561450100_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a11904d0-8eaf-4ef1-9483-c0cf3d6efa82 b6b9e3c6da94f87e916c4e1d7c7969b0 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_7db6ef3a.MethArray.Red.T C3N-02788 GBM Methylation_Array tumor CPT0206330006 203561450100_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 887629ca-f957-4dbf-88e1-c76a23b853a2 83ca5d788cac6d79cae3abbf51e76db5 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_7db6ef3a.WGS.T C3N-02788 GBM WGS tumor CPT0206330006 CPT0206330006.WholeGenome.RP-1303.bam 64019815472 BAM submitted_aligned CPTAC3 1a6c06bd-b790-442e-8c91-4f8057a89275 bca81d47d116b0dd7048c7471f6122e9 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_7db6ef3a.WGS.T.hg38 C3N-02788 GBM WGS tumor CPT0206330006 7abd92d0-2c6c-4fe7-a411-32349d22d560_wgs_gdc_realn.bam 91320411824 BAM harmonized CPTAC3 2929e7c9-d068-40e3-b84d-071b68f43ca8 305e7bed5e096c6fa6739b99d205ef5a {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_7db6ef3a.WXS.T C3N-02788 GBM WXS tumor CPT0206330006 CPT0206330006.WholeExome.RP-1303.bam 24969782426 BAM submitted_aligned CPTAC3 963d1033-d6d6-43c9-9cdb-86dffd33b25f f66cf8f01d62df74a98fc0c6264593e7 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_7db6ef3a.WXS.T.hg38 C3N-02788 GBM WXS tumor CPT0206330006 7abd92d0-2c6c-4fe7-a411-32349d22d560_wxs_gdc_realn.bam 33937652781 BAM harmonized CPTAC3 4865666f-0144-4dc2-8d12-0ea2061e80e7 f863637b28d5b10c081ac651638f5f61 {"aliquot_tag": "REP_7db6ef3a", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_ed09f2ab.miRNA-Seq.S20_L006_R1.T C3N-02788 GBM miRNA-Seq tumor CPT0206330009 190712_UNC32-K00270_0192_BH7HL3BBXY_TATAAT_S20_L006_R1_001.unaln.bam 249498216 BAM S20_L006_R1 submitted_unaligned CPTAC3 25a3e5fd-e370-47a6-966d-0c0383465e5e 57e30b4c2d050098ccc339253078f18b {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_ed09f2ab.miRNA-Seq.T.hg38 C3N-02788 GBM miRNA-Seq tumor CPT0206330009 e9a7f315-2214-4b4e-a9bd-19be335a1d95_mirnaseq_gdc_realn.bam 277630523 BAM harmonized CPTAC3 d861cbe4-15f7-4707-82a0-64f2dc16e953 3b4fe7d1145f776d61de645e627e8db5 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_ed09f2ab.RNA-Seq.chimeric.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.chimeric.gdc_realn.bam 59797032 BAM chimeric harmonized CPTAC3 ffbeaa5d-55c2-4337-8cf9-2f6a32503cf4 0ded8ff55853dda49215a5b6ee50a397 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_ed09f2ab.RNA-Seq.genomic.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.genomic.gdc_realn.bam 11269058877 BAM genomic harmonized CPTAC3 a42a15eb-ecfc-4cb4-8548-5fe25f3e7934 db2977eb6e13939b9ad20c585e7ecdbc {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_ed09f2ab.RNA-Seq.S5_L002_R1.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R1_001.fastq.gz 4684053431 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 7bf21101-629d-4259-9f38-bfe43c0d53fc c49453e0b5b74b6319d52cc63db777fb {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_ed09f2ab.RNA-Seq.S5_L002_R2.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R2_001.fastq.gz 5280082406 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 a9dca933-ce7f-4c10-baf2-71e0ac9d55b4 aebec0339799c517d34032a504b8a6d1 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.REP_ed09f2ab.RNA-Seq.transcriptome.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.transcriptome.gdc_realn.bam 10855362272 BAM transcriptome harmonized CPTAC3 f75cf70b-6d6e-425a-a5df-8632df0e14c9 76c29e2cb0030eccec04c4c26bde2e97 {"aliquot_tag": "REP_ed09f2ab", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.RNA-Seq.chimeric.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.chimeric.gdc_realn.bam 198910017 BAM chimeric harmonized CPTAC3 ab06f778-5a29-4f14-b75b-298e36d4ebe8 d82bcf72556377cb09553a3fedcb45ff {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.RNA-Seq.genomic.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.genomic.gdc_realn.bam 9975497060 BAM genomic harmonized CPTAC3 62179a40-8513-44ab-82bd-574fe33f0471 d41f1ba9aa358ddcf5f3376b6d2a472f {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.RNA-Seq.S2_L008_R1.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R1_001.fastq.gz 4658025764 FASTQ S2_L008_R1 submitted_unaligned CPTAC3 62b1b0ce-4eb2-46d2-94d8-aee595b6d77b 53957fcb41603b6eeaa1b0ed02eff4e6 {"aliquot_tag": "ALQ_f2f61a9a", "sample": "S2", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.RNA-Seq.S2_L008_R2.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R2_001.fastq.gz 4762905703 FASTQ S2_L008_R2 submitted_unaligned CPTAC3 146465b8-09cb-4b1c-966b-cb5ac56598eb e813c1293b66bca19b82431de76bc308 {"aliquot_tag": "ALQ_f2f61a9a", "sample": "S2", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.RNA-Seq.transcriptome.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.transcriptome.gdc_realn.bam 11075739003 BAM transcriptome harmonized CPTAC3 cada5703-567e-4834-bb3e-8a818122614e b121ffc8ba2e7f0e91d5deeac2246549 {"aliquot_tag": "ALQ_f2f61a9a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.WGS.N C3N-02788 GBM WGS blood_normal CPT0206390002 CPT0206390002.WholeGenome.RP-1303.bam 60760463962 BAM submitted_aligned CPTAC3 ade8f2ff-6eb1-4b41-aba0-911969d177c6 cb7beb43aac83f4a7acdba0150a96f78 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02788.WGS.N.hg38 C3N-02788 GBM WGS blood_normal CPT0206390002 784b8eee-0d64-4a0c-bb26-694e63127598_wgs_gdc_realn.bam 88933770661 BAM harmonized CPTAC3 9cee893d-bbe8-4f6b-a08f-e20512c97679 169cee23bf7ccae1077aa4a468bef708 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02788.WGS.T C3N-02788 GBM WGS tumor CPT0206350009 CPT0206350009.WholeGenome.RP-1303.bam 61474194371 BAM submitted_aligned CPTAC3 53085456-74c5-4b93-b477-992efe9741ca 1f7070aed1031acd780af7d88108d9bc {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.WGS.T.hg38 C3N-02788 GBM WGS tumor CPT0206350009 aa167109-bd98-4b3b-99d8-019e11e988f5_wgs_gdc_realn.bam 89085921042 BAM harmonized CPTAC3 1033d5bc-bb5c-4819-b984-d13b2b2a18bc 480e1a27c306ea77d7d7c2d15d53329c {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.WXS.N C3N-02788 GBM WXS blood_normal CPT0206390002 CPT0206390002.WholeExome.RP-1303.bam 31488877550 BAM submitted_aligned CPTAC3 e8ead195-f58b-4e4b-af3f-e9db12f423a2 6b9a922b357f4350f060c62171cb5656 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02788.WXS.N.hg38 C3N-02788 GBM WXS blood_normal CPT0206390002 784b8eee-0d64-4a0c-bb26-694e63127598_wxs_gdc_realn.bam 43614585993 BAM harmonized CPTAC3 c488d878-1022-4929-890c-4b0615bcf063 a81a86f0a07f20ef6ac34617a9de2819 {"aliquot_tag": "ALQ_306b3382", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02788.WXS.T C3N-02788 GBM WXS tumor CPT0206350009 CPT0206350009.WholeExome.RP-1303.bam 23580643355 BAM submitted_aligned CPTAC3 00de89fa-7389-4ba6-844d-98f63189499a 42a2d5e7ae3764e6edc20f405213b9ac {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02788.WXS.T.hg38 C3N-02788 GBM WXS tumor CPT0206350009 aa167109-bd98-4b3b-99d8-019e11e988f5_wxs_gdc_realn.bam 32212172650 BAM harmonized CPTAC3 34dc6412-ae30-444d-8683-2be9eb0f0924 8695d825ebfba5ea1c91facd86be22b2 {"aliquot_tag": "ALQ_6249070b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02789.DUP_aadf5570.WGS.T C3N-02789 UCEC WGS tumor CPT0186010007_1 CPT0186010007_1.WholeGenome.RP-1303.bam 64519562640 BAM submitted_aligned CPTAC3 803773e3-b365-46f1-89b9-126be88a2364 752af37204382c3cb9b1b3c4fb084d74 {"aliquot_tag": "DUP_aadf5570", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.DUP_aadf5570.WGS.T.hg38 C3N-02789 UCEC WGS tumor CPT0186010007_1 e9de4564-6c8b-43c7-9f3a-119a8cdc4596_wgs_gdc_realn.bam 96197335427 BAM harmonized CPTAC3 d73392c9-6706-4d86-8623-33af6e9e8311 5dc1ca21d48116b85876da7b009d908a {"aliquot_tag": "DUP_aadf5570", "aliquot_annotation": "Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.MethArray.Green.T C3N-02789 UCEC Methylation_Array tumor CPT0186010007 203561620153_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 194d7685-bab1-430f-b1ad-563694a8225e 89bc9adf7abb44225b56f041eb66ce7b {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.MethArray.Red.T C3N-02789 UCEC Methylation_Array tumor CPT0186010007 203561620153_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 bb9d450f-8c89-4f3a-bad8-b9873f5afc07 ba8046f4d434b50dcd2fad83a7f2112e {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.miRNA-Seq.S19_L003_R1.T C3N-02789 UCEC miRNA-Seq tumor CPT0186010010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 204083880 BAM S19_L003_R1 submitted_unaligned CPTAC3 a6085fa8-9081-4796-9d0a-5252cbf3c3de 37ae8054e5775e6ca66ef4be32934149 {"aliquot_tag": "ALQ_9bf27df0", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.miRNA-Seq.T.hg38 C3N-02789 UCEC miRNA-Seq tumor CPT0186010010 01a62d3e-e905-4099-a6e1-247f37119995_mirnaseq_gdc_realn.bam 225741221 BAM harmonized CPTAC3 72ed1975-1adb-4e9b-a6ba-4efa06042e46 fd5a7a61c6d7139aacbbbed2e1351414 {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.chimeric.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.chimeric.gdc_realn.bam 33768476 BAM chimeric harmonized CPTAC3 7df404c6-0f75-4b20-97bb-3384d3dbf648 16181001315d9990d438930c2bc0f6f1 {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.chimeric.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.chimeric.gdc_realn.bam 167624464 BAM chimeric harmonized CPTAC3 0c481972-56d6-405d-9b39-53bc9831f492 39105220c6cad24238dea17864640618 {"aliquot_tag": "ALQ_b24e06f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.genomic.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.genomic.gdc_realn.bam 7962165720 BAM genomic harmonized CPTAC3 3b96c9f9-0574-4945-b109-00dae4c3ad89 7e6cc52b8ad5954028c459367ebcb81b {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.genomic.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.genomic.gdc_realn.bam 9689522511 BAM genomic harmonized CPTAC3 5f175c78-95d3-4612-9415-6226141e4c95 7c9bf8e6aeb2df8f12ded89f659f5523 {"aliquot_tag": "ALQ_b24e06f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.S21_L006_R1.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R1_001.fastq.gz 3840472252 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 4353b2fe-1b21-4707-b307-e3d8cadc9c4e f0094d315338c4b3b5d65be9ac6173b2 {"aliquot_tag": "ALQ_9bf27df0", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.S21_L006_R2.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R2_001.fastq.gz 4376535516 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 918aaf2f-e742-4f07-ae31-805fa1810d60 a3fb0f7bbcc71db617ed4fbe88e7ca03 {"aliquot_tag": "ALQ_9bf27df0", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.S43_R1.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R1_001.fastq.gz 4681302026 FASTQ S43_R1 submitted_unaligned CPTAC3 59cad0cc-d9ea-42f5-b61a-2f69b4d8593d e4195f6a44cf447d86914539e4375668 {"aliquot_tag": "ALQ_b24e06f7", "sample": "S43", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.S43_R2.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R2_001.fastq.gz 4906743791 FASTQ S43_R2 submitted_unaligned CPTAC3 def093bb-aae7-4785-87a7-b6379d1a72d2 2f165981905e7b0d450f9c1ceac5da87 {"aliquot_tag": "ALQ_b24e06f7", "sample": "S43", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.transcriptome.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.transcriptome.gdc_realn.bam 8986346622 BAM transcriptome harmonized CPTAC3 02964aac-5615-47db-8984-de0c7be713d0 45efba9b76b6c5e70dac328ae73e3083 {"aliquot_tag": "ALQ_9bf27df0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.RNA-Seq.transcriptome.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.transcriptome.gdc_realn.bam 4315782139 BAM transcriptome harmonized CPTAC3 8b8202c4-26d2-49dc-8972-b025374cfff9 1acbd56025eb82d260cc1e29dfb2e671 {"aliquot_tag": "ALQ_b24e06f7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.WGS.N C3N-02789 UCEC WGS blood_normal CPT0187210002 CPT0187210002.WholeGenome.RP-1303.bam 79142145455 BAM submitted_aligned CPTAC3 6d3b1cec-18c2-4257-8d2b-fe521f141e8c 2129a0dc07788c613c10c95deb32b3e0 {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02789.WGS.N.hg38 C3N-02789 UCEC WGS blood_normal CPT0187210002 41120db2-190d-4f48-8307-5840b7e0610d_wgs_gdc_realn.bam 116123753565 BAM harmonized CPTAC3 264e1112-48d6-4989-85da-c03dddc49fa0 2699e880cbd5db607d960e7834130dad {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02789.WGS.T C3N-02789 UCEC WGS tumor CPT0186010007 CPT0186010007.WholeGenome.RP-1303.bam 28213945581 BAM submitted_aligned CPTAC3 a0ba6e02-f0fb-49b2-ac43-1bf1c9bc0cb9 3841e3e61ac59c2dd9d549275f92f57a {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.WGS.T.hg38 C3N-02789 UCEC WGS tumor CPT0186010007 5af68a3a-43ce-4fa5-b95f-8da01877a691_wgs_gdc_realn.bam 39495453557 BAM harmonized CPTAC3 31ae0c8a-854b-41fa-b8f2-227cc7d65668 af073db46b3b275de4d5a1ddce8425f8 {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.WXS.N C3N-02789 UCEC WXS blood_normal CPT0187210002 CPT0187210002.WholeExome.RP-1303.bam 21508410557 BAM submitted_aligned CPTAC3 7982581b-e60f-4058-a1b7-d22d10f60bcd 9cb6d1bd7def967af3aa0e0f267faa30 {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02789.WXS.N.hg38 C3N-02789 UCEC WXS blood_normal CPT0187210002 41120db2-190d-4f48-8307-5840b7e0610d_wxs_gdc_realn.bam 29147050827 BAM harmonized CPTAC3 b193b9a0-4631-4924-b066-76f4ef235502 15c6c692c131187b4c971630857519f3 {"aliquot_tag": "ALQ_87588722", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02789.WXS.T C3N-02789 UCEC WXS tumor CPT0186010007 CPT0186010007.WholeExome.RP-1303.bam 28213945651 BAM submitted_aligned CPTAC3 2dc04940-397f-4705-9f67-14f49da09c3b 868d5e3abb8bca7aff5bfc537f4a6fc3 {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02789.WXS.T.hg38 C3N-02789 UCEC WXS tumor CPT0186010007 5af68a3a-43ce-4fa5-b95f-8da01877a691_wxs_gdc_realn.bam 39933077809 BAM harmonized CPTAC3 5aa8e920-315c-4a75-960f-54b06912867e bbd609931cb9312ee6d3c5061dea10b4 {"aliquot_tag": "ALQ_1c8dd912", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02811.MethArray.Green.A C3N-02811 CCRCC Methylation_Array tissue_normal CPT0158410006 204930640023_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f6d8405b-cab4-426c-9877-d2919cbe667e e2c39cb59d943a2af585d0f42974b75b {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.MethArray.Green.T C3N-02811 CCRCC Methylation_Array tumor CPT0158390009 203219640133_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 67f0a901-ed7e-41a9-906b-9466af6ae407 ba3b67a02d00682c8bc79b9f31ee0581 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.MethArray.Red.A C3N-02811 CCRCC Methylation_Array tissue_normal CPT0158410006 204930640023_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 70ef9be1-0ad8-454f-a5f1-ebc7badf3eca e50cfffcbb63d52835044cb46af059e4 {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.MethArray.Red.T C3N-02811 CCRCC Methylation_Array tumor CPT0158390009 203219640133_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 71c1c131-33c9-4526-8fb3-43f0d8b46f6d d55e8fbac73ca76a4b8d9a75b68fc0fd {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.miRNA-Seq.A.hg38 C3N-02811 CCRCC miRNA-Seq tissue_normal CPT0158410009 0f50c5c9-4613-4958-a40b-370bdb019d29_mirnaseq_gdc_realn.bam 300589381 BAM harmonized CPTAC3 daaeb615-efaa-409d-8cc3-0f72a154cd9f 3f4e424ac7c7926a4f4b85feda969cbc {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.miRNA-Seq.S32_L005_R1.A C3N-02811 CCRCC miRNA-Seq tissue_normal CPT0158410009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L005_R1_001.unaln.bam 276558404 BAM S32_L005_R1 submitted_unaligned CPTAC3 77139397-2b5b-4ce2-9b48-f7b98e1aecc9 b0ac537c28cf8faa87db8a7dbf404cfd {"aliquot_tag": "ALQ_ab9ed88f", "sample": "S32", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.miRNA-Seq.S40_L005_R1.T C3N-02811 CCRCC miRNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTCAGA_S40_L005_R1_001.unaln.bam 187805973 BAM S40_L005_R1 submitted_unaligned CPTAC3 345eba3e-b484-4a34-80b7-7402c65e3768 d102a6705ded0a1b7867c6d522cf3249 {"aliquot_tag": "ALQ_1654be67", "sample": "S40", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.miRNA-Seq.T.hg38 C3N-02811 CCRCC miRNA-Seq tumor CPT0158390006 28df4fa1-5aa3-4b2d-96b1-423be0fa872b_mirnaseq_gdc_realn.bam 201259133 BAM harmonized CPTAC3 4af03392-11e9-4708-95f7-7bb87b36c285 48e7586ece76b58d8c160ef83096fb9e {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.RNA-Seq.chimeric.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.chimeric.gdc_realn.bam 31730782 BAM chimeric harmonized CPTAC3 e6e9d6f8-c26c-4900-bfe3-12afeed2e7c1 11542fb2a462a5c319cc8939ac32fc1c {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.RNA-Seq.chimeric.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.chimeric.gdc_realn.bam 44252927 BAM chimeric harmonized CPTAC3 b873906c-b351-4fef-89d9-164a3e100405 571f337b4e698d4e95507ed717ce6d2e {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.RNA-Seq.genomic.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.genomic.gdc_realn.bam 7984114021 BAM genomic harmonized CPTAC3 cea9d722-25d6-449f-bed4-14d0dc8b0a9c 449c30c44ce2252f0075cd6b6065859e {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.RNA-Seq.genomic.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.genomic.gdc_realn.bam 9500027894 BAM genomic harmonized CPTAC3 16e8bee5-4b06-4fdb-91a5-873daae33c91 05ccd03a9e12ee2a80ec74c331b5f83f {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.RNA-Seq.S20_L005_R1.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R1_001.fastq.gz 4557259586 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 a04b4675-67f5-4a91-a37c-169b2428ac2f 2824db59eced80eb7e5055916718fd75 {"aliquot_tag": "ALQ_1654be67", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.RNA-Seq.S20_L005_R2.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R2_001.fastq.gz 4584500003 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 b719c08a-a980-48c4-ad4a-07b6977628a4 801e02259076fdb71c8c22768dd1db22 {"aliquot_tag": "ALQ_1654be67", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.RNA-Seq.S22_L006_R1.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 3677409445 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 927aa7e2-0377-4b1c-8415-aacc3446a97a 544826926ca09db9dd98661c58876357 {"aliquot_tag": "ALQ_ab9ed88f", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.RNA-Seq.S22_L006_R2.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3912059478 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 c225e3db-6ce8-43d0-a1fe-11fd3669cfa2 652b6627df8413c397d314773b2e0d2e {"aliquot_tag": "ALQ_ab9ed88f", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.RNA-Seq.transcriptome.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.transcriptome.gdc_realn.bam 10007143618 BAM transcriptome harmonized CPTAC3 6e22bb58-31bf-4eb8-968e-1f88d75595a9 b1675a01dfb3d63e0cf3e6b7972de778 {"aliquot_tag": "ALQ_ab9ed88f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.RNA-Seq.transcriptome.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.transcriptome.gdc_realn.bam 13014056943 BAM transcriptome harmonized CPTAC3 69d1cc66-75aa-4889-9c35-96479bd2c673 9ad3ee0082bca4055f4ed11728869908 {"aliquot_tag": "ALQ_1654be67", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.WGS.N C3N-02811 CCRCC WGS blood_normal CPT0159420002 CPT0159420002.WholeGenome.RP-1303.bam 119602612980 BAM submitted_aligned CPTAC3 7474c1b1-bfca-4ede-9a45-3e1ec326da5f a787d097be4e1d9b9b8997e19bb79c3c {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02811.WGS.N.hg38 C3N-02811 CCRCC WGS blood_normal CPT0159420002 ad7c9f0f-faad-492c-b2d3-9d5c3d08b19d_wgs_gdc_realn.bam 176045800696 BAM harmonized CPTAC3 c8479063-f347-401d-b0a7-c85a5e696724 4a168439eac553b3152a3a9b94d8d4fa {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02811.WGS.T C3N-02811 CCRCC WGS tumor CPT0158390009 CPT0158390009.WholeGenome.RP-1303.bam 102404679838 BAM submitted_aligned CPTAC3 e4f7d866-71d3-4bc1-bb15-20d7561ed861 a31de49e0500f55039a8181d92bab901 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.WGS.T.hg38 C3N-02811 CCRCC WGS tumor CPT0158390009 88476837-1b91-4542-b13b-a1011013deb2_wgs_gdc_realn.bam 149445577439 BAM harmonized CPTAC3 7f55b9b6-78ad-4679-9d15-2d9da3450f9a 99e3a8071562c82fcefea01ff20cc8e2 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.WXS.A C3N-02811 CCRCC WXS tissue_normal CPT0158410006 CPT0158410006.WholeExome.RP-1303.bam 21007355981 BAM submitted_aligned CPTAC3 3186fdee-7f19-4bf6-9760-6f3c94b0ecc5 005e7fb98b33dd527b095769708a1f72 {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.WXS.A.hg38 C3N-02811 CCRCC WXS tissue_normal CPT0158410006 83907aef-9c39-4898-93dd-394819a8f838_wxs_gdc_realn.bam 28669913867 BAM harmonized CPTAC3 2e334aa4-0b96-4bb4-8ecf-7872cf6e5af2 f9a0e3ce5caab643c902a8eb3b9bda7c {"aliquot_tag": "ALQ_3b21c51e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02811.WXS.N C3N-02811 CCRCC WXS blood_normal CPT0159420002 CPT0159420002.WholeExome.RP-1303.bam 20948483906 BAM submitted_aligned CPTAC3 8d0347f0-fa4e-478e-b6be-44b6109db8c9 99ca347c0ca85f8fa312d825fd220f41 {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02811.WXS.N.hg38 C3N-02811 CCRCC WXS blood_normal CPT0159420002 ad7c9f0f-faad-492c-b2d3-9d5c3d08b19d_wxs_gdc_realn.bam 29074604235 BAM harmonized CPTAC3 f238cfbc-ac5f-4c34-b507-62d86e777a35 3efd21de6dd85fe39556c255eeb620cc {"aliquot_tag": "ALQ_dd9b7063", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02811.WXS.T C3N-02811 CCRCC WXS tumor CPT0158390009 CPT0158390009.WholeExome.RP-1303.bam 27034290043 BAM submitted_aligned CPTAC3 00427998-cda2-4a65-899a-b56f42187af2 6949d9b3d3f5ad06e237f49daf5dd2e3 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02811.WXS.T.hg38 C3N-02811 CCRCC WXS tumor CPT0158390009 88476837-1b91-4542-b13b-a1011013deb2_wxs_gdc_realn.bam 36815738995 BAM harmonized CPTAC3 dc2613d5-6e81-45dd-95a7-493971ba8258 5d46d84aa735933a90b5ccb418bfafb2 {"aliquot_tag": "ALQ_86eba3f6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02818.MethArray.Green.T C3N-02818 CCRCC Methylation_Array tumor CPT0384570009 205555380161_R04C01_Grn.idat 13677960 IDAT Green NA CPTAC3 f66ad155-c0c3-4724-85a6-c395916ea216 58c134c42021179fc423058fb6d09ce8 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.MethArray.Red.T C3N-02818 CCRCC Methylation_Array tumor CPT0384570009 205555380161_R04C01_Red.idat 13677960 IDAT Red NA CPTAC3 85693193-4ef1-4a48-96a4-5ef358edb4d5 6c41236f2f198fde7fd065fb16a51368 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.miRNA-Seq.A.hg38 C3N-02818 CCRCC miRNA-Seq tissue_normal CPT0384610006 e225c426-0fe3-464c-ac98-04d625fcbce1_mirnaseq_gdc_realn.bam 337761733 BAM harmonized CPTAC3 063534ce-d048-4e9d-abb2-3263c03546de 732c88cee855ffcad2ea42c2754a7570 {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02818.miRNA-Seq.S16_L001_R1.T C3N-02818 CCRCC miRNA-Seq tumor CPT0384570006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTCCGC_S16_L001_R1_001.unaln.bam 215995441 BAM S16_L001_R1 submitted_unaligned CPTAC3 7d8c36ce-c32e-4036-a17b-7bf50b3024c3 6ece375108e18f282668be2890be453c {"aliquot_tag": "ALQ_d6eb438", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.miRNA-Seq.S17_L001_R1.A C3N-02818 CCRCC miRNA-Seq tissue_normal CPT0384610006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTGAAA_S17_L001_R1_001.unaln.bam 311724381 BAM S17_L001_R1 submitted_unaligned CPTAC3 65e74d04-ad08-4cc9-bea3-97ad73227b96 f819a147db0d726aece1f39f6cf2bec7 {"aliquot_tag": "ALQ_4ba3336", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02818.miRNA-Seq.T.hg38 C3N-02818 CCRCC miRNA-Seq tumor CPT0384570006 87abcf75-a32b-4d8c-b5a5-a6e6e5c4e281_mirnaseq_gdc_realn.bam 236636652 BAM harmonized CPTAC3 6a9ac40f-b99d-402a-8b85-2da9bcdd72dc 7b950ee42bbbbc76ebfd1b19693f730c {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.RNA-Seq.chimeric.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.chimeric.gdc_realn.bam 224862519 BAM chimeric harmonized CPTAC3 35058dd8-4c03-40f8-b804-3768f28db709 b93f2ddca27b2a75f3c39d866cd4e568 {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02818.RNA-Seq.chimeric.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.chimeric.gdc_realn.bam 434102748 BAM chimeric harmonized CPTAC3 b64fceda-d4fd-4a2d-a1d8-14817a4b4285 22ba2996713d80d86b01107977ae351c {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.RNA-Seq.genomic.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.genomic.gdc_realn.bam 9857763682 BAM genomic harmonized CPTAC3 92b133d9-63e9-4d96-9306-7476b5830497 a3f4eb65f78c8a375dc167bbe0c7340c {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02818.RNA-Seq.genomic.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.genomic.gdc_realn.bam 8476752132 BAM genomic harmonized CPTAC3 2e604fe5-33db-47e2-8b1f-bfcd38f875c1 b921a7b418d15fc10699e49b3c4e8cf5 {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.RNA-Seq.S17_L005_R1.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R1_001.fastq.gz 4652492930 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 008a349f-e929-4ac0-a320-561848d92de1 04daf7a06d2e7414d3565a11acd8af60 {"aliquot_tag": "ALQ_4ba3336", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02818.RNA-Seq.S17_L005_R2.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R2_001.fastq.gz 5208089217 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 8aeb4e95-6ee9-409a-a0d7-6690046dbcbb 9c7f4af89ca048cf9f7cd3d13257d2e2 {"aliquot_tag": "ALQ_4ba3336", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02818.RNA-Seq.S18_L005_R1.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R1_001.fastq.gz 3892192304 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 32f88dd1-ca34-4867-9152-377b436b327d 533e4bd41144f62e7ee780063b1e1b91 {"aliquot_tag": "ALQ_d6eb438", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.RNA-Seq.S18_L005_R2.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R2_001.fastq.gz 4470571382 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 c9319c6c-68b1-4159-af09-cfb368f3d9d9 e9117d080dda5b7ffaf72733d7dbc975 {"aliquot_tag": "ALQ_d6eb438", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.RNA-Seq.transcriptome.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.transcriptome.gdc_realn.bam 10859331897 BAM transcriptome harmonized CPTAC3 c4f67472-83bd-414d-86ab-51b08e99326d dd1e451040d5589658980a9770df4f70 {"aliquot_tag": "ALQ_4ba3336", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02818.RNA-Seq.transcriptome.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.transcriptome.gdc_realn.bam 10018906579 BAM transcriptome harmonized CPTAC3 c717ed2d-6ac2-4a29-baa8-96e5fa81dcc0 575fe1ddce2183579d8d35a3aca27dfe {"aliquot_tag": "ALQ_d6eb438", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.WGS.N C3N-02818 CCRCC WGS blood_normal CPT0385440002 CPT0385440002.WholeGenome.RP-2158.bam 23576810784 BAM submitted_aligned CPTAC3 a6ca1392-73b2-4e33-880a-73456b8d06cd b64925593b677ec6d84fc58f58d3620e {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02818.WGS.N.hg38 C3N-02818 CCRCC WGS blood_normal CPT0385440002 92998ab3-9aab-4c07-9d25-c4208aae1d07_wgs_gdc_realn.bam 72526670197 BAM harmonized CPTAC3 84ffccb6-332d-4cae-98ef-9b28c63857b3 44a0783bd90724f728a43c7d80f8b5ec {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02818.WGS.T C3N-02818 CCRCC WGS tumor CPT0384570009 CPT0384570009.WholeGenome.RP-2158.bam 24307267996 BAM submitted_aligned CPTAC3 24abdf0a-b891-45f1-b35b-25a6c725ab0a a99e501ee02944d7ce1fd17288a049ae {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.WGS.T.hg38 C3N-02818 CCRCC WGS tumor CPT0384570009 45108c83-67fe-47cd-a376-8038e5346144_wgs_gdc_realn.bam 72943686301 BAM harmonized CPTAC3 8ea48cc6-6c33-445f-92a7-69c9f7893642 eaf442fcedae8ff1bae49bb3867da511 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.WXS.N C3N-02818 CCRCC WXS blood_normal CPT0385440002 CPT0385440002.WholeExome.RP-1303.bam 24792142776 BAM submitted_aligned CPTAC3 28a2132e-2896-47eb-8baf-0fc1d9ff3647 d0b52f7064d28ab475400356cda335f0 {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02818.WXS.N.hg38 C3N-02818 CCRCC WXS blood_normal CPT0385440002 92998ab3-9aab-4c07-9d25-c4208aae1d07_wxs_gdc_realn.bam 34163580049 BAM harmonized CPTAC3 3541c639-e82e-4c65-8589-9f9ca6db0a08 1d251830648cb63d380a3297433fb8ec {"aliquot_tag": "ALQ_2088d2e0", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-02818.WXS.T C3N-02818 CCRCC WXS tumor CPT0384570009 CPT0384570009.WholeExome.RP-1303.bam 27985678904 BAM submitted_aligned CPTAC3 1e8251e9-ec23-43ca-8e0e-38a56ebdf147 bef220a3bc4f0c5cba27940d8c82c6bc {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02818.WXS.T.hg38 C3N-02818 CCRCC WXS tumor CPT0384570009 45108c83-67fe-47cd-a376-8038e5346144_wxs_gdc_realn.bam 38620135795 BAM harmonized CPTAC3 5b969522-9fea-4ec3-acd6-b0abcbe46294 d3471892f40b6ba7882fad553fc56777 {"aliquot_tag": "ALQ_9dd1a9a9", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-02828.MethArray.Green.A C3N-02828 LUAD Methylation_Array tissue_normal CPT0215770006 203561450084_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b0234b52-0f2c-4f07-a2de-619c1d385319 818ac068f6fc4ce1ee7ee530eeff4013 {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.MethArray.Green.T C3N-02828 LUAD Methylation_Array tumor CPT0215730006 203273630258_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 186bcf34-9670-404d-888d-ed4baf3a198c b7f029a35cf95d64967c1f6d4756ac56 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.MethArray.Red.A C3N-02828 LUAD Methylation_Array tissue_normal CPT0215770006 203561450084_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 a67805e1-e6e9-452d-86cf-115f41c97c67 fc7f314a004a2cada1d264579d51732d {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.MethArray.Red.T C3N-02828 LUAD Methylation_Array tumor CPT0215730006 203273630258_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 d5bb0b3e-f09e-4b1d-b716-de18ca741367 5d6cce75a319e91dcd739e669c18272b {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.miRNA-Seq.A.hg38 C3N-02828 LUAD miRNA-Seq tissue_normal CPT0215770009 5c785f87-f11e-4bc7-85eb-119d418676fc_mirnaseq_gdc_realn.bam 300370427 BAM harmonized CPTAC3 fc09b733-222a-411d-b1c1-15c7119e2b6a 6078b4064e82ef48db9ef8b091fc8a7e {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.miRNA-Seq.S150_L007_R1.T C3N-02828 LUAD miRNA-Seq tumor CPT0215730009 190828_UNC32-K00270_0200_BH7GVJBBXY_CAAAAG_S150_L007_R1_001.unaln.bam 183391279 BAM S150_L007_R1 submitted_unaligned CPTAC3 0de1e184-2af4-47e1-8a91-3c708272ac1d fac8a3c035c703f6af26c3cfdead450e {"aliquot_tag": "ALQ_8bdaaabe", "sample": "S150", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.miRNA-Seq.S40_L006_R1.A C3N-02828 LUAD miRNA-Seq tissue_normal CPT0215770009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGGCA_S40_L006_R1_001.unaln.bam 263463523 BAM S40_L006_R1 submitted_unaligned CPTAC3 0014e06b-fade-4b7c-8e24-804e3529f90a 605535842e7438a87cc2ec55e21b6f6a {"aliquot_tag": "ALQ_7e5a0c7e", "sample": "S40", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.miRNA-Seq.T.hg38 C3N-02828 LUAD miRNA-Seq tumor CPT0215730009 f66892ec-c9bc-4e3d-baf2-ebfc8badf25c_mirnaseq_gdc_realn.bam 199442597 BAM harmonized CPTAC3 8be6e13e-49d1-4441-8c6e-d0c58c41585e a6527b1929a699dd67207a9c7753e663 {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.RNA-Seq.chimeric.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.chimeric.gdc_realn.bam 23289245 BAM chimeric harmonized CPTAC3 79e79191-c8b7-4683-a657-e0b4130c86c0 abb8f107f0ffa1a415a7545d579c18cd {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.RNA-Seq.chimeric.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.chimeric.gdc_realn.bam 29880535 BAM chimeric harmonized CPTAC3 69fbeb94-2f69-4b7e-8899-80024a19dd5f ffc383ab682b7137fe3395ad0e818629 {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.RNA-Seq.genomic.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.genomic.gdc_realn.bam 10141181169 BAM genomic harmonized CPTAC3 38990439-6f45-452e-8f17-661c2b04cfa2 66843c187e1c2bff36b966bb12307e31 {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.RNA-Seq.genomic.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.genomic.gdc_realn.bam 13031503786 BAM genomic harmonized CPTAC3 62f344c7-8fff-4d6e-8511-8a0dfe3316e4 8a03f49ebe2d1378acc5cf7143857b2e {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.RNA-Seq.S29_L008_R1.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R1_001.fastq.gz 3160603343 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 c63f259a-3fa4-4c94-b105-6ccbe98f5d94 b3c6dd0140757bc8b48fbfce3625cab5 {"aliquot_tag": "ALQ_7e5a0c7e", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.RNA-Seq.S29_L008_R2.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R2_001.fastq.gz 3441286145 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 8a40eb23-2d96-4857-9c58-0dc12467175a ae64ea748312eddbbae46d9e8e9218f9 {"aliquot_tag": "ALQ_7e5a0c7e", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.RNA-Seq.S32_L008_R1.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R1_001.fastq.gz 4182911729 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 42a981c7-80d4-446f-9577-60d6271eaa14 26414472431865e40856816773ba8420 {"aliquot_tag": "ALQ_8bdaaabe", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.RNA-Seq.S32_L008_R2.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R2_001.fastq.gz 4723422530 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 43cca998-14a8-4d36-991d-7fa57b7f822f e69af08d06d22b4d39bdf5330f37c79a {"aliquot_tag": "ALQ_8bdaaabe", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.RNA-Seq.transcriptome.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.transcriptome.gdc_realn.bam 6390313424 BAM transcriptome harmonized CPTAC3 2206c3ca-7963-424e-9cbe-9ad7028de41c 73a1b5cad0951ade51c0a9b07edb458a {"aliquot_tag": "ALQ_7e5a0c7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.RNA-Seq.transcriptome.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.transcriptome.gdc_realn.bam 10659526208 BAM transcriptome harmonized CPTAC3 0d796210-1a2d-4b73-828b-4fd097ec2b7d cd99095912094e883ab8b2f83d3cdadd {"aliquot_tag": "ALQ_8bdaaabe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.WGS.N C3N-02828 LUAD WGS blood_normal CPT0215850002 CPT0215850002.WholeGenome.RP-1303.bam 62459536553 BAM submitted_aligned CPTAC3 8f3c8bbd-9a69-4633-9d07-86f628fa0593 575fdb042460192918d466103cda93cb {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02828.WGS.N.hg38 C3N-02828 LUAD WGS blood_normal CPT0215850002 6bf07321-701f-41d6-b0da-7d4e4463dd3c_wgs_gdc_realn.bam 91105046734 BAM harmonized CPTAC3 32f69432-cde6-41b3-91d2-3b66eeb81811 44b97b836fe813dff115ca341ea7dfb5 {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02828.WGS.T C3N-02828 LUAD WGS tumor CPT0215730006 CPT0215730006.WholeGenome.RP-1303.bam 57203844208 BAM submitted_aligned CPTAC3 b7b7c9b3-7e90-45ba-92a3-83c58a9a4bbc af4af440333876d84da6521aeb809303 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.WGS.T.hg38 C3N-02828 LUAD WGS tumor CPT0215730006 3f47ae85-5796-4681-8441-49ae30c3b28e_wgs_gdc_realn.bam 84667981053 BAM harmonized CPTAC3 243c8eb3-6090-48ee-bdb6-35fc6fc95886 1fa30a37283c244de00a3d0d55d5e8f4 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.WXS.A C3N-02828 LUAD WXS tissue_normal CPT0215770006 CPT0215770006.WholeExome.RP-1303.bam 20546258894 BAM submitted_aligned CPTAC3 b5880edb-e599-4acf-8569-02e88cbd0e4a 2a05dc12aed03a5cf340540d2499dba9 {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.WXS.A.hg38 C3N-02828 LUAD WXS tissue_normal CPT0215770006 21ca064b-359b-4bf4-8319-6fa64d573774_wxs_gdc_realn.bam 28494143477 BAM harmonized CPTAC3 c8ebaf66-27ba-46f2-b807-83b319906b10 39e5ead2d2735ec6823797ef74bdf68b {"aliquot_tag": "ALQ_eee511ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02828.WXS.N C3N-02828 LUAD WXS blood_normal CPT0215850002 CPT0215850002.WholeExome.RP-1303.bam 31884960226 BAM submitted_aligned CPTAC3 3a3cb431-382e-42f0-aebb-b86fc9843583 2f0652dab51b88371e3dfb507059d9d3 {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02828.WXS.N.hg38 C3N-02828 LUAD WXS blood_normal CPT0215850002 6bf07321-701f-41d6-b0da-7d4e4463dd3c_wxs_gdc_realn.bam 44248904736 BAM harmonized CPTAC3 f257f0af-dc46-4fec-9b7d-5ffc3cdc02d6 600dbfcd1db185f3600d56be9660a03e {"aliquot_tag": "ALQ_621e3443", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02828.WXS.T C3N-02828 LUAD WXS tumor CPT0215730006 CPT0215730006.WholeExome.RP-1303.bam 28039009073 BAM submitted_aligned CPTAC3 09fd9dde-972c-4d0e-a7fd-422c7cf1c686 02d3623ec4a9bef0a94636cd3680890f {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02828.WXS.T.hg38 C3N-02828 LUAD WXS tumor CPT0215730006 3f47ae85-5796-4681-8441-49ae30c3b28e_wxs_gdc_realn.bam 38965037538 BAM harmonized CPTAC3 4655ed3d-5da9-49f4-ba20-b47109cd8d10 ee6dd0a7c241bafe0553320239ff4f00 {"aliquot_tag": "ALQ_1b65b72f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.MethArray.Green.A C3N-02916 LUAD Methylation_Array tissue_normal CPT0215950006 203561620052_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a74045f0-e061-425c-ae03-766ac9713f4d 63204a0ffadd3b4b4f3b6fd0cf8dc37e {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.MethArray.Green.T C3N-02916 LUAD Methylation_Array tumor CPT0215930006 203561450106_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6ba0f547-2989-4126-b98f-8128d359380f d9d389e1820ce5bf8355d10bc407faa0 {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.MethArray.Red.A C3N-02916 LUAD Methylation_Array tissue_normal CPT0215950006 203561620052_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 d3c46cd6-f601-49a7-b147-c9d5af4f4899 a7e88874977a5c8e076e07fec4443a0c {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.MethArray.Red.T C3N-02916 LUAD Methylation_Array tumor CPT0215930006 203561450106_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5fad2663-12b6-4249-a1ee-2888706c5cc6 ad2f2448a2e53918e42b33f78c34c3ee {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.miRNA-Seq.A.hg38 C3N-02916 LUAD miRNA-Seq tissue_normal CPT0215950009 7041d936-d106-4263-86f5-fbda25a2addf_mirnaseq_gdc_realn.bam 229484080 BAM harmonized CPTAC3 02147db4-fbd8-4ef9-84f3-a9c2ea26839a b9ce874dca05d186809bf8ff6007df95 {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.miRNA-Seq.S24_L004_R1.T C3N-02916 LUAD miRNA-Seq tumor CPT0215930009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAACTA_S24_L004_R1_001.unaln.bam 224456500 BAM S24_L004_R1 submitted_unaligned CPTAC3 22fd9325-ce9f-4148-83de-6cabee685507 2fc4c13060d7d92352024db368b19a59 {"aliquot_tag": "ALQ_b1d0cbce", "sample": "S24", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.miRNA-Seq.S41_L007_R1.A C3N-02916 LUAD miRNA-Seq tissue_normal CPT0215950009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTCCGC_S41_L007_R1_001.unaln.bam 197297649 BAM S41_L007_R1 submitted_unaligned CPTAC3 80f7bab0-40ae-41ee-a526-284ce2ab1946 9cd7e807f4f2a8a9a6375a1bb359fbb8 {"aliquot_tag": "ALQ_3e903e6e", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.miRNA-Seq.T.hg38 C3N-02916 LUAD miRNA-Seq tumor CPT0215930009 53819102-5f48-441b-b214-c7ec83d44fd9_mirnaseq_gdc_realn.bam 251821548 BAM harmonized CPTAC3 d26fea1d-5376-49bb-af5d-bcbfc0298131 25350a14a3dbeeef06ebd49eb3a78db6 {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.RNA-Seq.chimeric.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.chimeric.gdc_realn.bam 33886586 BAM chimeric harmonized CPTAC3 83afeeaa-3c01-46b7-a71f-1bf5cccc04b5 786b9faff7bad4908cd1c2ae1ae73ed6 {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.RNA-Seq.chimeric.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.chimeric.gdc_realn.bam 37018701 BAM chimeric harmonized CPTAC3 a5cbfa61-9585-441d-996e-48246ae2a2d9 dc73686c9a8b00e33a025adedffb8e68 {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.RNA-Seq.genomic.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.genomic.gdc_realn.bam 7008480874 BAM genomic harmonized CPTAC3 4afec2f0-3e6a-4bc8-ac42-7f0e2b72775d 21dec993f1de1f4943e9fa5ae179b03e {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.RNA-Seq.genomic.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.genomic.gdc_realn.bam 12473098556 BAM genomic harmonized CPTAC3 b5ecb523-b21c-4233-a52b-fc09a13b916b 8e1ad7e406a335d96cc751a6b25be4aa {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.RNA-Seq.S25_L007_R1.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R1_001.fastq.gz 4249643387 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 a2a8ca66-70e4-4650-a1ad-9671fcb029a6 612ed46e2e74dbed55073dcdcf194577 {"aliquot_tag": "ALQ_b1d0cbce", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.RNA-Seq.S25_L007_R2.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R2_001.fastq.gz 4713666263 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 ad61b750-3b70-4238-82b3-d3d7a1f1edaa f92bba2bd0f496611935dfe3f3d059e0 {"aliquot_tag": "ALQ_b1d0cbce", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.RNA-Seq.S8_L002_R1.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R1_001.fastq.gz 2823535156 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 62e5b863-96e9-4cee-885d-62847c273d7a e5dbdb097f0d68bbb3bf57c5ec42a763 {"aliquot_tag": "ALQ_3e903e6e", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.RNA-Seq.S8_L002_R2.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R2_001.fastq.gz 3355523451 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 122fc75e-1587-4cc9-9b32-179cdf23d699 fb5a07b5d813c80d0eb2eddf3d830523 {"aliquot_tag": "ALQ_3e903e6e", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.RNA-Seq.transcriptome.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.transcriptome.gdc_realn.bam 6434138771 BAM transcriptome harmonized CPTAC3 a9f57008-cbb4-4deb-bd4e-c1189d5d6b3e 87363621dc22fd77461145e7286fec02 {"aliquot_tag": "ALQ_3e903e6e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.RNA-Seq.transcriptome.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.transcriptome.gdc_realn.bam 9796922354 BAM transcriptome harmonized CPTAC3 05a90a44-f028-4219-9241-498c9045004f 944d303fd153ed2a0ec5f731e9f9f2c1 {"aliquot_tag": "ALQ_b1d0cbce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.WGS.N C3N-02916 LUAD WGS blood_normal CPT0216030002 CPT0216030002.WholeGenome.RP-1303.bam 66651850484 BAM submitted_aligned CPTAC3 636e364b-d40c-427b-b620-0e783b089d6e 62e9e6dc45b1b1394a7e286564ac9770 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02916.WGS.N.hg38 C3N-02916 LUAD WGS blood_normal CPT0216030002 ad53e3c8-12dd-45ed-80c5-43c6ec9efa20_wgs_gdc_realn.bam 96625085436 BAM harmonized CPTAC3 ff85602f-9761-48a1-836b-21a28938b9c6 d5cbac8b20eff6c1f7055499f8324712 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02916.WGS.T C3N-02916 LUAD WGS tumor CPT0215930006 CPT0215930006.WholeGenome.RP-1303.bam 56765471490 BAM submitted_aligned CPTAC3 0fc87cf6-1d09-40e0-9ef1-4324104d7ec5 8c12574aa207be79e0fa2eee8df22b13 {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.WGS.T.hg38 C3N-02916 LUAD WGS tumor CPT0215930006 0ecdcf72-7578-4171-8e68-b86c57961d3f_wgs_gdc_realn.bam 83310289814 BAM harmonized CPTAC3 141ad1a7-a5e5-4a3f-b064-9ef509647dda a81ab72049d9c1314ab1a2abfe1d474f {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.WXS.A C3N-02916 LUAD WXS tissue_normal CPT0215950006 CPT0215950006.WholeExome.RP-1303.bam 21220762029 BAM submitted_aligned CPTAC3 150e9d0b-2e00-4391-8285-e7052071ff10 ffa6afb1f1aafd240e81ef563f1a966a {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.WXS.A.hg38 C3N-02916 LUAD WXS tissue_normal CPT0215950006 22f8a773-1d72-4ef0-a15c-7f9296935b4e_wxs_gdc_realn.bam 29318177996 BAM harmonized CPTAC3 dfda3bf6-c831-40fe-a671-764e45d65956 45f04f504c41112dfb4c8b914f1a391d {"aliquot_tag": "ALQ_ae2f23ff", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02916.WXS.N C3N-02916 LUAD WXS blood_normal CPT0216030002 CPT0216030002.WholeExome.RP-1303.bam 22491040475 BAM submitted_aligned CPTAC3 1d1bed6c-3d74-49f4-8cc8-c44fdb0e0db9 49a324b1b63a5348610ef33068f3d401 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02916.WXS.N.hg38 C3N-02916 LUAD WXS blood_normal CPT0216030002 ad53e3c8-12dd-45ed-80c5-43c6ec9efa20_wxs_gdc_realn.bam 31121905997 BAM harmonized CPTAC3 75bdeefd-94e5-448f-81f8-53425d99b910 26d4997e68690f96afb2e43abb062c39 {"aliquot_tag": "ALQ_30e55913", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02916.WXS.T C3N-02916 LUAD WXS tumor CPT0215930006 CPT0215930006.WholeExome.RP-1303.bam 25745991484 BAM submitted_aligned CPTAC3 5dbe607c-b943-492a-a753-7db40c342d1a 363cdd17992296443203931045a0045c {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02916.WXS.T.hg38 C3N-02916 LUAD WXS tumor CPT0215930006 0ecdcf72-7578-4171-8e68-b86c57961d3f_wxs_gdc_realn.bam 36046734710 BAM harmonized CPTAC3 aa25005a-8558-4fdf-ba29-1083149aecbd 47fbd4795682cd3363f48b545bd17f45 {"aliquot_tag": "ALQ_216fd65f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.MethArray.Green.A C3N-02919 LUAD Methylation_Array tissue_normal CPT0216130007 203561450106_R02C01_Grn.idat 13676217 IDAT Green NA CPTAC3 aabfca07-cfe5-42ce-853e-4be091ed9cf9 bf1263b7d784997bdb0a479ba8abec64 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.MethArray.Green.T C3N-02919 LUAD Methylation_Array tumor CPT0216100007 203561450025_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 e8b52357-47e9-495c-b690-404458021d4d a438f3e24a1493d407afd2f59a92dacc {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.MethArray.Red.A C3N-02919 LUAD Methylation_Array tissue_normal CPT0216130007 203561450106_R02C01_Red.idat 13676217 IDAT Red NA CPTAC3 eef9a70b-64a0-4783-b097-ff6496f11de3 9720300e3872ee1f9bc81a4bd2665002 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.MethArray.Red.T C3N-02919 LUAD Methylation_Array tumor CPT0216100007 203561450025_R05C01_Red.idat 13676222 IDAT Red NA CPTAC3 9f28f05c-7a09-4850-bf91-090be6efe55f 62630888860459148ea0677aa795bfbb {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.miRNA-Seq.A.hg38 C3N-02919 LUAD miRNA-Seq tissue_normal CPT0216130010 5e88d29b-5d45-4d81-b7fd-b53f212c5529_mirnaseq_gdc_realn.bam 234663566 BAM harmonized CPTAC3 c324d625-9b34-4fdb-a970-9fdbc5eab355 03baa8a9251f24ec5d90686806342cd7 {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.miRNA-Seq.S34_L005_R1.T C3N-02919 LUAD miRNA-Seq tumor CPT0216100010 190712_UNC32-K00270_0192_BH7HL3BBXY_GGCTAC_S34_L005_R1_001.unaln.bam 163416097 BAM S34_L005_R1 submitted_unaligned CPTAC3 87b63c8e-266c-406e-a2fc-4c5e6bd68df3 682d1ab8f215241ab57b4a8ad5a95a16 {"aliquot_tag": "ALQ_4b0ca00b", "sample": "S34", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.miRNA-Seq.S35_L005_R1.A C3N-02919 LUAD miRNA-Seq tissue_normal CPT0216130010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTTGTA_S35_L005_R1_001.unaln.bam 205950529 BAM S35_L005_R1 submitted_unaligned CPTAC3 c2f22b30-ee34-4401-920a-d0a1373bc587 35e0fec776ad9d7383b525b5cc10619e {"aliquot_tag": "ALQ_cacdadb", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.miRNA-Seq.T.hg38 C3N-02919 LUAD miRNA-Seq tumor CPT0216100010 cca011bd-9171-42bf-8903-c0c1beae8e89_mirnaseq_gdc_realn.bam 181998867 BAM harmonized CPTAC3 ca43d960-67e1-42ea-8136-9fc9289fa3cd a9445eb1f03db6d16de27d0fc7df5a40 {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.RNA-Seq.chimeric.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.chimeric.gdc_realn.bam 43871233 BAM chimeric harmonized CPTAC3 514f9fe6-9e3f-45cc-9316-db40c70f773e 1ebbca7403a8762e64f6130f1ae0bfe8 {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.RNA-Seq.chimeric.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.chimeric.gdc_realn.bam 28237731 BAM chimeric harmonized CPTAC3 4ab08eec-79fb-4723-b5c9-cd778b74c8e7 9874a9a22e4895c2370801ff82323bee {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.RNA-Seq.genomic.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.genomic.gdc_realn.bam 9781059279 BAM genomic harmonized CPTAC3 0006f87b-aa44-4ba7-a6e3-2e3be4474700 9e3b4750e0fda3bd1d5ab0bc7ecfe2f1 {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.RNA-Seq.genomic.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.genomic.gdc_realn.bam 7039798745 BAM genomic harmonized CPTAC3 3ba893e9-7cd4-4151-996d-957a2f1de3ba 0e69a5cfae949f76c3a4ccfe9bda03c5 {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.RNA-Seq.S23_L006_R1.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R1_001.fastq.gz 4836850627 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 035d916b-9f18-4500-8476-23c62a245c0e 3fadf4a6a2ffb8745b2b5bd1d43c025a {"aliquot_tag": "ALQ_cacdadb", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.RNA-Seq.S23_L006_R2.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R2_001.fastq.gz 5163596208 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 806d7768-6d24-4976-a789-8be6df07fdba 2baf2346cf45964d0ae18d0a4d880fb2 {"aliquot_tag": "ALQ_cacdadb", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.RNA-Seq.S32_L008_R1.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R1_001.fastq.gz 3009547640 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 dd6883bd-1c4e-4463-a454-1fae413f67ff ffea8d99cd53bb2e41659ff4795913b8 {"aliquot_tag": "ALQ_4b0ca00b", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.RNA-Seq.S32_L008_R2.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R2_001.fastq.gz 3462130922 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 d1d44d98-a7a7-45b4-8287-22fc1b7b8c0f c049edc19d6c57e01c0bbdda519de887 {"aliquot_tag": "ALQ_4b0ca00b", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.RNA-Seq.transcriptome.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.transcriptome.gdc_realn.bam 11315553210 BAM transcriptome harmonized CPTAC3 990fbd0b-d08d-4df3-a34e-88a793d353f9 f604e6a8f84d97a9236626fcfa49af6e {"aliquot_tag": "ALQ_cacdadb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.RNA-Seq.transcriptome.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.transcriptome.gdc_realn.bam 7566725579 BAM transcriptome harmonized CPTAC3 93c302eb-c252-48e1-adae-87b431f9acaf 263847b9d891161dfe8a59ac6b43d94c {"aliquot_tag": "ALQ_4b0ca00b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.WGS.N C3N-02919 LUAD WGS blood_normal CPT0216210002 CPT0216210002.WholeGenome.RP-1303.bam 58373119348 BAM submitted_aligned CPTAC3 971c40c8-3bff-4f93-a6fd-cd174153e9c6 595861938303dee14df6fba5136521f6 {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02919.WGS.N.hg38 C3N-02919 LUAD WGS blood_normal CPT0216210002 953b0568-9522-498c-aee6-c1fb78164d87_wgs_gdc_realn.bam 84908614613 BAM harmonized CPTAC3 40c324e5-419d-4c42-be84-6a2a4009bebc 9881465e0b2a59c730d340a512f949f5 {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02919.WGS.T C3N-02919 LUAD WGS tumor CPT0216100007 CPT0216100007.WholeGenome.RP-1303.bam 69478095156 BAM submitted_aligned CPTAC3 eca9774d-5eaa-4c2a-9cc2-95a39e6bbb94 755364999d0f8ef1ef44c9c45e68808d {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.WGS.T.hg38 C3N-02919 LUAD WGS tumor CPT0216100007 0fd57c95-5356-4783-8036-8d6144d84618_wgs_gdc_realn.bam 101547202254 BAM harmonized CPTAC3 70942b03-9759-4e1e-a9d6-b42a294dc2ec f72d23a6a91f591e22fe1c93d8b47105 {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.WXS.A C3N-02919 LUAD WXS tissue_normal CPT0216130007 CPT0216130007.WholeExome.RP-1303.bam 35109853070 BAM submitted_aligned CPTAC3 ec91eca8-123a-405c-9ba2-fa9a8226c995 8f8f36a170245f0c40d1f3cea8b1df07 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.WXS.A.hg38 C3N-02919 LUAD WXS tissue_normal CPT0216130007 67dc0e59-8778-49c9-9853-e3f794a2829e_wxs_gdc_realn.bam 48596178027 BAM harmonized CPTAC3 e8dc549f-c544-4d8b-9be2-e02981186acc 89d5643a2a21ef321890bf2b3bfbcdb3 {"aliquot_tag": "ALQ_8bd37e39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02919.WXS.N C3N-02919 LUAD WXS blood_normal CPT0216210002 CPT0216210002.WholeExome.RP-1303.bam 24504523761 BAM submitted_aligned CPTAC3 86e13a81-a0a4-4a2c-af28-ce35db6681dc 8d47aabe0b3d971ff695c08702fee070 {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02919.WXS.N.hg38 C3N-02919 LUAD WXS blood_normal CPT0216210002 953b0568-9522-498c-aee6-c1fb78164d87_wxs_gdc_realn.bam 33243504704 BAM harmonized CPTAC3 5fd26427-3b21-40e5-8ac2-fe337256792b 1fb81b48b30c3d48a6df02c3c52d40dc {"aliquot_tag": "ALQ_7edab78", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02919.WXS.T C3N-02919 LUAD WXS tumor CPT0216100007 CPT0216100007.WholeExome.RP-1303.bam 23551340039 BAM submitted_aligned CPTAC3 f282b818-d78a-4f42-8efe-e72bb93caeea baabe949f377a56c8936c21468790e12 {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02919.WXS.T.hg38 C3N-02919 LUAD WXS tumor CPT0216100007 0fd57c95-5356-4783-8036-8d6144d84618_wxs_gdc_realn.bam 33276826821 BAM harmonized CPTAC3 b7cce6f8-3867-4fe4-9215-24b8d18f35a6 986564d72807ad2178695746c94a80e2 {"aliquot_tag": "ALQ_cc7304e9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.MethArray.Green.A C3N-02920 LUAD Methylation_Array tissue_normal CPT0216310006 203561620095_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 958c4dc5-5754-40f1-9857-fd2fe33e6f8a 64cc97061e8bd03c632b4d94005b2618 {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.MethArray.Green.T C3N-02920 LUAD Methylation_Array tumor CPT0216290006 203561620077_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 14c47fd7-88eb-4d85-9686-787fd46e16c8 a147cc20077a5ebf0b0bed328b12f3de {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.MethArray.Red.A C3N-02920 LUAD Methylation_Array tissue_normal CPT0216310006 203561620095_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 e974b734-fc9b-4369-b4f2-0c51a2b41431 277573b9ac20c0b904ccc60afbaccd51 {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.MethArray.Red.T C3N-02920 LUAD Methylation_Array tumor CPT0216290006 203561620077_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 f9523ea1-9e16-4a23-9f47-8d79739a4829 0eb952cb73119148a2294c99b2e25426 {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.miRNA-Seq.A.hg38 C3N-02920 LUAD miRNA-Seq tissue_normal CPT0216310009 4b48994e-1a31-45c2-a2c1-1008190b16ba_mirnaseq_gdc_realn.bam 193145538 BAM harmonized CPTAC3 09996913-c2d5-4e95-8f52-b0ab59088cc4 f7b1fbf8280d76f678f3e0012bccbae0 {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.miRNA-Seq.S38_L007_R1.A C3N-02920 LUAD miRNA-Seq tissue_normal CPT0216310009 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGTCA_S38_L007_R1_001.unaln.bam 166547148 BAM S38_L007_R1 submitted_unaligned CPTAC3 554ba187-9525-4e86-a170-928f2d3a84a8 7fe39b769a345f0bc5b7dc666bc6da4d {"aliquot_tag": "ALQ_5b63a155", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.miRNA-Seq.S5_L005_R1.T C3N-02920 LUAD miRNA-Seq tumor CPT0216290009 190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L005_R1_001.unaln.bam 183678300 BAM S5_L005_R1 submitted_unaligned CPTAC3 7047d914-598f-4bd5-b821-ebac4e137c83 9664a66c17cd21bd754787a269c62672 {"aliquot_tag": "ALQ_a04f3931", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.miRNA-Seq.T.hg38 C3N-02920 LUAD miRNA-Seq tumor CPT0216290009 75a1ee2e-bcb7-4d26-8f5c-8fd50d955835_mirnaseq_gdc_realn.bam 205659615 BAM harmonized CPTAC3 e4505fe3-97b8-4536-9863-2648b01c4f44 5ff27b16f93680641e1ef2175529dc6b {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.RNA-Seq.chimeric.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.chimeric.gdc_realn.bam 46885061 BAM chimeric harmonized CPTAC3 97838c93-6a84-4907-9cfc-f2ea4be2f8cb 0dace3de87f14b9491bcdfbc6abeaeac {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.RNA-Seq.chimeric.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.chimeric.gdc_realn.bam 33172104 BAM chimeric harmonized CPTAC3 f70eaddb-6fed-4a93-91b1-a44c1a72fc9c 793a97cb289306f2ea824ae504f4b3e2 {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.RNA-Seq.genomic.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.genomic.gdc_realn.bam 7874690207 BAM genomic harmonized CPTAC3 d14f86d6-64de-4e6b-8a1e-0dd7510e0939 aa9632723ca8b77a4917b7c20155dea2 {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.RNA-Seq.genomic.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.genomic.gdc_realn.bam 11282027719 BAM genomic harmonized CPTAC3 d0fa215a-893f-41af-86e0-740a1c272450 90ef45ac1fe12cc63fd0e8782d1e0815 {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.RNA-Seq.S14_L004_R1.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R1_001.fastq.gz 3585738159 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 8dc939d3-9709-4d6e-9ecc-10f93d866946 0c016ae583be8287664dffa7f07fc391 {"aliquot_tag": "ALQ_5b63a155", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.RNA-Seq.S14_L004_R2.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R2_001.fastq.gz 3641266628 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 dc2a0bbd-c9ba-4d4c-af0f-a04c16588529 928f05329f6bc8d61e7638cabfe7f46f {"aliquot_tag": "ALQ_5b63a155", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.RNA-Seq.S15_L004_R1.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R1_001.fastq.gz 4054240221 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 7bad4bc6-3826-4337-aaee-7fc7b7bdba87 36d695754f8785d02143bba6f57deb9f {"aliquot_tag": "ALQ_a04f3931", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.RNA-Seq.S15_L004_R2.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R2_001.fastq.gz 4580137441 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 ee358250-2f35-46d0-adf9-e3b48f1f147a 58b50bffff1ee964bf2c70a7ac4e66a2 {"aliquot_tag": "ALQ_a04f3931", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.RNA-Seq.transcriptome.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.transcriptome.gdc_realn.bam 7969053901 BAM transcriptome harmonized CPTAC3 260f4d86-eed8-4ac6-863a-919007694df8 7a1e0e380a3da6aebda8fbd8309df89c {"aliquot_tag": "ALQ_5b63a155", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.RNA-Seq.transcriptome.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.transcriptome.gdc_realn.bam 10019765126 BAM transcriptome harmonized CPTAC3 7cf8f7ce-6ee7-4a26-975a-2a26b4bfb5df 1e31c31df40803f934e3260f7a7f9876 {"aliquot_tag": "ALQ_a04f3931", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.WGS.N C3N-02920 LUAD WGS blood_normal CPT0216390002 CPT0216390002.WholeGenome.RP-1303.bam 66033213317 BAM submitted_aligned CPTAC3 36fdbd6a-5457-40fb-a53e-b5fbd33cca1f a4fa19976db29ff0159e0ebe0c4113fa {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02920.WGS.N.hg38 C3N-02920 LUAD WGS blood_normal CPT0216390002 1b1c55fb-ec4d-425b-8341-4b72b1e6fc81_wgs_gdc_realn.bam 98882106593 BAM harmonized CPTAC3 616e2f18-ef37-446e-874e-340c0ee33e81 9401c1fe66400fa91f6b59eb5744cf8f {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02920.WGS.T C3N-02920 LUAD WGS tumor CPT0216290006 CPT0216290006.WholeGenome.RP-1303.bam 78577604282 BAM submitted_aligned CPTAC3 0a444abd-f237-4b70-a512-f025414434f2 41806ac1786ece94f378842eec8fdcc8 {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.WGS.T.hg38 C3N-02920 LUAD WGS tumor CPT0216290006 2140d4f2-bb01-4866-87ba-66457bd8c891_wgs_gdc_realn.bam 114082348254 BAM harmonized CPTAC3 96562906-63ca-4000-9bb4-74c6f40c630f b8b9a157175ac10acbca7f2b5a25bc6d {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.WXS.A C3N-02920 LUAD WXS tissue_normal CPT0216310006 CPT0216310006.WholeExome.RP-1303.bam 27882884416 BAM submitted_aligned CPTAC3 a645d041-747a-498c-9fda-4de7888a05c1 594a6dd739be5aa306a9b86eeae3cdf5 {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.WXS.A.hg38 C3N-02920 LUAD WXS tissue_normal CPT0216310006 0bd8e977-3aa9-4ca4-9994-81fce757a8b5_wxs_gdc_realn.bam 38630777649 BAM harmonized CPTAC3 f0ba825e-f479-473d-8218-000503928adb 0a10d59a73e757a38c9800995f8d3a8e {"aliquot_tag": "ALQ_cbdcbcc4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02920.WXS.N C3N-02920 LUAD WXS blood_normal CPT0216390002 CPT0216390002.WholeExome.RP-1303.bam 22277510953 BAM submitted_aligned CPTAC3 7dfd87a3-ad2f-48ff-89b8-a3da335fadb8 8d01855afb0f7ddf5a4d045160eb574f {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02920.WXS.N.hg38 C3N-02920 LUAD WXS blood_normal CPT0216390002 1b1c55fb-ec4d-425b-8341-4b72b1e6fc81_wxs_gdc_realn.bam 30615397018 BAM harmonized CPTAC3 edfc0c96-97e4-43b1-8f22-b9bf45ca2398 cb64e11c07b4a25e8312f8ea7ff3c72a {"aliquot_tag": "ALQ_fcc1331c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02920.WXS.T C3N-02920 LUAD WXS tumor CPT0216290006 CPT0216290006.WholeExome.RP-1303.bam 21184060527 BAM submitted_aligned CPTAC3 3535e562-12f2-423f-a1a7-300d0c7207df 9372492dbb6c9f8cda5a45dc7900ef7a {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02920.WXS.T.hg38 C3N-02920 LUAD WXS tumor CPT0216290006 2140d4f2-bb01-4866-87ba-66457bd8c891_wxs_gdc_realn.bam 29318445351 BAM harmonized CPTAC3 047b50be-b144-4c7b-ab96-d74e57beffcb b66f591115f16e731b7a7f0e1384dfae {"aliquot_tag": "ALQ_30f024a0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.MethArray.Green.A C3N-02922 LUAD Methylation_Array tissue_normal CPT0216490006 203561450114_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ebc33038-6a24-40b6-9d3a-33137fbd6246 cbcbdee6419697226aeee5e4709e6e13 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.MethArray.Green.T C3N-02922 LUAD Methylation_Array tumor CPT0216480006 203561450103_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8d1a271c-938b-4082-b904-8ca9c9678319 c3f16f4a038bbd9bca19e9e74f084232 {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.MethArray.Red.A C3N-02922 LUAD Methylation_Array tissue_normal CPT0216490006 203561450114_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 50b04752-8b65-4e50-b483-aa053de5fa36 f1e2ddf801e23d838465343468e728c0 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.MethArray.Red.T C3N-02922 LUAD Methylation_Array tumor CPT0216480006 203561450103_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 43115ba7-1364-43a6-93cb-fc903fabdf1b a87cd806573b0258fe4397fb6261a18f {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.miRNA-Seq.A.hg38 C3N-02922 LUAD miRNA-Seq tissue_normal CPT0216490009 17e66ba4-b244-4a0d-ac2c-873cf45e9d66_mirnaseq_gdc_realn.bam 261450137 BAM harmonized CPTAC3 ba5bd037-790b-415a-b83c-e88303f4c56e ff5977c81ab4489afbab368bac8c5bad {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.miRNA-Seq.S23_L004_R1.T C3N-02922 LUAD miRNA-Seq tumor CPT0216480009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATTCCT_S23_L004_R1_001.unaln.bam 146576186 BAM S23_L004_R1 submitted_unaligned CPTAC3 715df405-4404-43f5-92eb-7e9cbac8ef99 11b099f35918b9d96ce2a6b0488223b6 {"aliquot_tag": "ALQ_4b76f39c", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.miRNA-Seq.S39_L007_R1.A C3N-02922 LUAD miRNA-Seq tissue_normal CPT0216490009 190712_UNC32-K00270_0192_BH7HL3BBXY_CCGTCC_S39_L007_R1_001.unaln.bam 229516180 BAM S39_L007_R1 submitted_unaligned CPTAC3 ab238937-ef18-4ff9-b11f-201a6a976422 bcc2e11da64465a7ebd858e652204a04 {"aliquot_tag": "ALQ_7616da2c", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.miRNA-Seq.T.hg38 C3N-02922 LUAD miRNA-Seq tumor CPT0216480009 5927fa2e-1461-4f06-beba-146749bd039c_mirnaseq_gdc_realn.bam 162062195 BAM harmonized CPTAC3 50df6007-dec6-4ce9-ac24-c16c19d1bd5a a9bd54bf2abfd156571f92da1fd21116 {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.RNA-Seq.chimeric.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.chimeric.gdc_realn.bam 41548503 BAM chimeric harmonized CPTAC3 b003629f-dcdb-4489-bc66-f8f624e004b8 1e34230d846f67fe8c754ec12b45bb6c {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.RNA-Seq.chimeric.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.chimeric.gdc_realn.bam 34819600 BAM chimeric harmonized CPTAC3 d0a10f1a-8759-41ba-8101-0e01312b9d5d b8f2b834b72efaf92339551503fa52b8 {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.RNA-Seq.genomic.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.genomic.gdc_realn.bam 6928771810 BAM genomic harmonized CPTAC3 68018dbf-5b4b-49fb-a1b5-decb87e586a6 950652612c9129e4e4e7e31250dbb228 {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.RNA-Seq.genomic.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.genomic.gdc_realn.bam 13615418189 BAM genomic harmonized CPTAC3 a7c117d1-61f1-4b0e-a5d3-d2b1f712b694 c3bd44d6ac44f3188389c5edaa3cc89f {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.RNA-Seq.S13_L004_R1.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R1_001.fastq.gz 2974470329 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 38ff721c-4f93-4a74-bfa7-35315250e9c8 1a026c930f8e04153333565f7e601cda {"aliquot_tag": "ALQ_7616da2c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.RNA-Seq.S13_L004_R2.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R2_001.fastq.gz 3139821052 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 b5751eba-377d-4ec1-b82f-3a3d5197ecfb 1ff192fc02c93383ebe923cd9e63b588 {"aliquot_tag": "ALQ_7616da2c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.RNA-Seq.S31_L008_R1.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R1_001.fastq.gz 4303484567 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 44aaf0e6-3695-4824-9dc9-bd53de11c1a6 7bb775e83114efbe57eb44eaef634c98 {"aliquot_tag": "ALQ_4b76f39c", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.RNA-Seq.S31_L008_R2.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R2_001.fastq.gz 4805757730 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 702cdbe5-5824-4df3-b7d6-8f8c6c6b8754 6990ebd55d447761a473f935f0d0eda7 {"aliquot_tag": "ALQ_4b76f39c", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.RNA-Seq.transcriptome.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.transcriptome.gdc_realn.bam 7431632511 BAM transcriptome harmonized CPTAC3 685a9b5a-0174-4cb7-bde4-804781c98c16 f369ba3292e55856c1ccd9ed4889de5d {"aliquot_tag": "ALQ_7616da2c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.RNA-Seq.transcriptome.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.transcriptome.gdc_realn.bam 10040943742 BAM transcriptome harmonized CPTAC3 0c71dd9d-18a6-4a38-90d5-1c08476806c2 f5c6edb17fa3791830fc0ffb582c01b6 {"aliquot_tag": "ALQ_4b76f39c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.WGS.N C3N-02922 LUAD WGS blood_normal CPT0216570002 CPT0216570002.WholeGenome.RP-1303.bam 57795022503 BAM submitted_aligned CPTAC3 0020ffb6-4666-4f9b-b29c-6163048ce2cf 48fe087ae640701cf9bd54cefb7efa11 {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02922.WGS.N.hg38 C3N-02922 LUAD WGS blood_normal CPT0216570002 a7a79960-bf5a-40c2-84d3-d35f0ce571fc_wgs_gdc_realn.bam 83399335233 BAM harmonized CPTAC3 2ad679a0-4b26-4a3e-a8a6-fc4a4f031838 ea2ae9f3ddbfb335b14eba39639ffa35 {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02922.WGS.T C3N-02922 LUAD WGS tumor CPT0216480006 CPT0216480006.WholeGenome.RP-1303.bam 75494729026 BAM submitted_aligned CPTAC3 72b7e617-4ca1-4704-8e0d-49f224421f3e f76b8feb24f05ca900109a0e3f7fcdbf {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.WGS.T.hg38 C3N-02922 LUAD WGS tumor CPT0216480006 8dbf8701-e91f-4675-8f3f-5f0634577669_wgs_gdc_realn.bam 112628247410 BAM harmonized CPTAC3 b3fc7372-8e78-4af9-8ccc-bb72b7d6398a bc4e7eff2847a88df07adb2a5980229f {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.WXS.A C3N-02922 LUAD WXS tissue_normal CPT0216490006 CPT0216490006.WholeExome.RP-1303.bam 19542390848 BAM submitted_aligned CPTAC3 a244a9ee-126f-41e7-b23f-4158056e404d 7f49f033071ac9f060fd7ff96fb0f6f4 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.WXS.A.hg38 C3N-02922 LUAD WXS tissue_normal CPT0216490006 573c4704-dee9-41ab-87d5-675b848b394e_wxs_gdc_realn.bam 27143856313 BAM harmonized CPTAC3 aebe54f4-1b7b-4cc9-9c5f-45252c3ed52b 617dfbd19923d2cfc4e261a8fa7280c1 {"aliquot_tag": "ALQ_e6a9c7bd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02922.WXS.N C3N-02922 LUAD WXS blood_normal CPT0216570002 CPT0216570002.WholeExome.RP-1303.bam 26866148452 BAM submitted_aligned CPTAC3 0e3c0cab-9b7d-416a-a4cb-2e7b695878a6 d22cf2bb75b4e4388a42ede92210a15a {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02922.WXS.N.hg38 C3N-02922 LUAD WXS blood_normal CPT0216570002 a7a79960-bf5a-40c2-84d3-d35f0ce571fc_wxs_gdc_realn.bam 37108950264 BAM harmonized CPTAC3 21130862-7d27-4174-9556-648285793d43 c1eaf4965b7bdaf5e894dfb3fc2a14a7 {"aliquot_tag": "ALQ_95a86e60", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02922.WXS.T C3N-02922 LUAD WXS tumor CPT0216480006 CPT0216480006.WholeExome.RP-1303.bam 25704004703 BAM submitted_aligned CPTAC3 91cbad9c-1df1-4a0d-8fff-50475da413cb 3f6fcd456de59e8b3cf583f01fdf5686 {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02922.WXS.T.hg38 C3N-02922 LUAD WXS tumor CPT0216480006 8dbf8701-e91f-4675-8f3f-5f0634577669_wxs_gdc_realn.bam 35976397966 BAM harmonized CPTAC3 ad8b9f75-147a-4fb5-aa68-2847f4a867f5 6253eff2d802cef2043143fb7bbda23d {"aliquot_tag": "ALQ_dbc9ee0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.MethArray.Green.A C3N-02923 LUAD Methylation_Array tissue_normal CPT0216670006 203219650005_R07C01_Grn.idat 13676227 IDAT Green NA CPTAC3 912e24f6-fa0e-4981-926a-2e03e671e894 f9ab575e4b68ba3d10e9be69fbc7622e {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.MethArray.Green.T C3N-02923 LUAD Methylation_Array tumor CPT0216660009 203219760081_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0d940011-e713-480c-87cc-f43c1a4991c8 46e152c1e5d40080af8b8dde62b56f08 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.MethArray.Red.A C3N-02923 LUAD Methylation_Array tissue_normal CPT0216670006 203219650005_R07C01_Red.idat 13676227 IDAT Red NA CPTAC3 61c246af-46d8-495c-a430-363dff839728 2489914d323fc8049b41cc9a5d2e4ab9 {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.MethArray.Red.T C3N-02923 LUAD Methylation_Array tumor CPT0216660009 203219760081_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 9183df1f-eae5-424d-9f36-cbaa0f2f75d7 6d537fe3a4240ac96ad00f50b88bda18 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.miRNA-Seq.A.hg38 C3N-02923 LUAD miRNA-Seq tissue_normal CPT0216670009 238ba219-8364-4a63-b75b-ae6f09726a8f_mirnaseq_gdc_realn.bam 250069863 BAM harmonized CPTAC3 c6352f30-e6ce-4c10-be2b-5cacd2d751cc 90ffed9210f39abcdc312057f05b5ff8 {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.miRNA-Seq.S23_L007_R1.T C3N-02923 LUAD miRNA-Seq tumor CPT0216660006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L007_R1_001.unaln.bam 234983930 BAM S23_L007_R1 submitted_unaligned CPTAC3 8e92c06f-f45c-4d67-b924-b9849736ab97 4c60abe544b9e188b01defecd08f8ba5 {"aliquot_tag": "ALQ_2931f167", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.miRNA-Seq.S5_L006_R1.A C3N-02923 LUAD miRNA-Seq tissue_normal CPT0216670009 190130_UNC31-K00269_0188_BH2FGCBBXY_TGACCA_S5_L006_R1_001.unaln.bam 226144047 BAM S5_L006_R1 submitted_unaligned CPTAC3 b6455857-9b12-413c-858a-a863c4845f76 a85f38abb713645934d2e6a500707197 {"aliquot_tag": "ALQ_84eec546", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.miRNA-Seq.T.hg38 C3N-02923 LUAD miRNA-Seq tumor CPT0216660006 019f6b45-71cf-42f8-afa8-f59b6752ee3d_mirnaseq_gdc_realn.bam 257172558 BAM harmonized CPTAC3 04fbfc0b-3faa-43bb-9456-7551de3abed8 46a3156fb8249d31f7238e8bea9e427c {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.RNA-Seq.chimeric.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.chimeric.gdc_realn.bam 44344926 BAM chimeric harmonized CPTAC3 ac0239a5-6b13-4724-a4cd-14a5424e2222 59ee6f1591456333ba8cf55f440e95af {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.RNA-Seq.chimeric.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.chimeric.gdc_realn.bam 47485573 BAM chimeric harmonized CPTAC3 97645f67-4266-44ed-835d-27aa97a78cc7 100536857c450ea3bbe6342c21f66407 {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.RNA-Seq.genomic.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.genomic.gdc_realn.bam 8872903730 BAM genomic harmonized CPTAC3 366c7d45-4466-4a67-b770-eb9c1dc48e5f ca5a19af6751d410ffb1aa6a026874ea {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.RNA-Seq.genomic.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.genomic.gdc_realn.bam 9544341301 BAM genomic harmonized CPTAC3 928e8c92-4317-4925-b398-ddec6921a0da 6b5b66b46f15ad930cb5bab050ae6a9c {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.RNA-Seq.S1_L001_R1.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R1_001.fastq.gz 4329208839 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 970f6e9d-47b6-4953-88ba-56d087050694 8dcd754eb9a94be25419e858fedf63db {"aliquot_tag": "ALQ_2931f167", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.RNA-Seq.S1_L001_R2.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R2_001.fastq.gz 4755262381 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 cc2b7783-aedf-4491-a579-b5f92ef1a4cb df95542ffe93f7bf6164d80eb290b562 {"aliquot_tag": "ALQ_2931f167", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.RNA-Seq.S21_L006_R1.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R1_001.fastq.gz 4054472385 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 d3c73b0a-b8cc-4953-8d69-44c28d72a258 9fa002f68dc07ce2bee32b01b4fd0db2 {"aliquot_tag": "ALQ_84eec546", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.RNA-Seq.S21_L006_R2.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R2_001.fastq.gz 4412620722 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 33e35314-ef71-47ec-b22a-4e6c450b5213 1e596d8907cbb45fa68bf378ee120943 {"aliquot_tag": "ALQ_84eec546", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.RNA-Seq.transcriptome.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.transcriptome.gdc_realn.bam 10271320773 BAM transcriptome harmonized CPTAC3 a0b73264-e4bf-4630-a032-9523f1f782d3 5ac5da6a23a72cd979ae3f2e8d79097b {"aliquot_tag": "ALQ_84eec546", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.RNA-Seq.transcriptome.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.transcriptome.gdc_realn.bam 11740294404 BAM transcriptome harmonized CPTAC3 f0094369-78df-4097-beaf-1559a06e14c9 ecfb001453e619822b9bda4f0c0a7ecc {"aliquot_tag": "ALQ_2931f167", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.WGS.N C3N-02923 LUAD WGS blood_normal CPT0216750002 CPT0216750002.WholeGenome.RP-1303.bam 50849014542 BAM submitted_aligned CPTAC3 8dafcd88-c395-43ac-bb37-18c5f12cb212 4622bb217417e52446c64add3542fed2 {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02923.WGS.N.hg38 C3N-02923 LUAD WGS blood_normal CPT0216750002 6e9385a2-99c3-4a0a-9d84-90e7a061ab4a_wgs_gdc_realn.bam 74390063218 BAM harmonized CPTAC3 91445358-8eee-4738-9441-64bdebd62c6d 8a898c97bab2137af731354942c4b0ee {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02923.WGS.T C3N-02923 LUAD WGS tumor CPT0216660009 CPT0216660009.WholeGenome.RP-1303.bam 52440615953 BAM submitted_aligned CPTAC3 8162b5da-59bf-4fd4-9009-0e81eb36e341 989e7d9e1454f9e6ed5ce89e55d5d7b0 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.WGS.T.hg38 C3N-02923 LUAD WGS tumor CPT0216660009 60f739cf-8791-4665-b6f7-3d27758deb5f_wgs_gdc_realn.bam 76748473080 BAM harmonized CPTAC3 7a3f0d62-eb78-4c90-9647-b2c053be5501 2d2d70b9ce19a99487394d487e2824aa {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.WXS.A C3N-02923 LUAD WXS tissue_normal CPT0216670006 CPT0216670006.WholeExome.RP-1303.bam 42218905981 BAM submitted_aligned CPTAC3 081c99f0-45ec-4836-a9b1-244f33d923df 44456fd8b2a4148ad7be29734531ed01 {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.WXS.A.hg38 C3N-02923 LUAD WXS tissue_normal CPT0216670006 7596b2ee-0cea-4e07-8b92-699d6eaa123e_wxs_gdc_realn.bam 58397593739 BAM harmonized CPTAC3 2ed17694-e189-4a40-9b8d-0feabcea5c21 bf462086c1fc127857efb21741aaa44c {"aliquot_tag": "ALQ_1451d8d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02923.WXS.N C3N-02923 LUAD WXS blood_normal CPT0216750002 CPT0216750002.WholeExome.RP-1303.bam 23754842198 BAM submitted_aligned CPTAC3 a32b2710-46dd-4adf-826f-a4f42481d8dd 9d7b62c1980a4f94110ead649dcd080c {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02923.WXS.N.hg38 C3N-02923 LUAD WXS blood_normal CPT0216750002 6e9385a2-99c3-4a0a-9d84-90e7a061ab4a_wxs_gdc_realn.bam 32467941212 BAM harmonized CPTAC3 a0c3f073-4879-4d0a-b9a8-97a2ec45043e fab57b0dcadb47be73050c56aa31620a {"aliquot_tag": "ALQ_a2a09c0b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02923.WXS.T C3N-02923 LUAD WXS tumor CPT0216660009 CPT0216660009.WholeExome.RP-1303.bam 22195396697 BAM submitted_aligned CPTAC3 6f5bee13-0d72-4067-80df-6499e14a5972 d011ab69bffff4d40ff95917a503ddb0 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02923.WXS.T.hg38 C3N-02923 LUAD WXS tumor CPT0216660009 60f739cf-8791-4665-b6f7-3d27758deb5f_wxs_gdc_realn.bam 30510899187 BAM harmonized CPTAC3 b44c2d0f-0350-474b-aa1b-98e10dfeb30d a78d101f7b7caf551342b7ccebd3d256 {"aliquot_tag": "ALQ_b98eecf6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.MethArray.Green.A C3N-02925 HNSCC Methylation_Array tissue_normal CPT0184550006 203219650071_R02C01_Grn.idat 13676210 IDAT Green NA CPTAC3 13283ed7-19c6-4965-aec9-c077ea4dd2a8 e52997d7d542ebb877672fe013fca904 {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.MethArray.Green.T C3N-02925 HNSCC Methylation_Array tumor CPT0184530006 203220070084_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 9fac413d-c7d6-42ef-943f-37b4cdb1fe33 ee79a0cf7b8e8383be2c750435cf5cab {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.MethArray.Red.A C3N-02925 HNSCC Methylation_Array tissue_normal CPT0184550006 203219650071_R02C01_Red.idat 13676210 IDAT Red NA CPTAC3 52c77164-e9f6-4250-9d44-4c376bb912ca e3f89a2f31a5016def05b431d3c03fbf {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.MethArray.Red.T C3N-02925 HNSCC Methylation_Array tumor CPT0184530006 203220070084_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 e18a41b0-9b03-49f1-983a-55e8f67721af 5faea833a65ccdc14f832f0e11bebb97 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.miRNA-Seq.A.hg38 C3N-02925 HNSCC miRNA-Seq tissue_normal CPT0184550009 04134394-603e-4772-90e0-19487886d623_mirnaseq_gdc_realn.bam 365897390 BAM harmonized CPTAC3 0b46457f-1b40-4383-8014-b23d5f5e1a51 a99ef7727b60c8255dea0a6f55f62c72 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.miRNA-Seq.S43_L002_R1.T C3N-02925 HNSCC miRNA-Seq tumor CPT0184530009 190228_UNC32-K00270_0151_AHYLY3BBXX_TACAGC_S43_L002_R1_001.unaln.bam 210114050 BAM S43_L002_R1 submitted_unaligned CPTAC3 558ff22f-7c3b-4aa9-91db-125b68d43be2 9f3c4eefeab9169547e122790386e7a9 {"aliquot_tag": "ALQ_46a727ef", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.miRNA-Seq.S47_L002_R1.A C3N-02925 HNSCC miRNA-Seq tissue_normal CPT0184550009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L002_R1_001.unaln.bam 319319560 BAM S47_L002_R1 submitted_unaligned CPTAC3 749ee51b-8eb3-4465-a736-3dd968f7c6a0 5a283cdd4fa315eeb73354ed39763cae {"aliquot_tag": "ALQ_c9e7d24f", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.miRNA-Seq.T.hg38 C3N-02925 HNSCC miRNA-Seq tumor CPT0184530009 c4071d42-0b92-43de-b176-94c5af6d50a7_mirnaseq_gdc_realn.bam 231929760 BAM harmonized CPTAC3 41c3cb4e-193e-4d3d-bdf0-fc4be4f7a09c 7ced2a970f5bedffe36c443ceb19ea91 {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.RNA-Seq.chimeric.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.chimeric.gdc_realn.bam 133834035 BAM chimeric harmonized CPTAC3 5517f748-3efc-4f34-a8d2-2b39f7b7545d dfb90356c74361c78c88c3eb9c2d08e2 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.RNA-Seq.chimeric.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.chimeric.gdc_realn.bam 110574015 BAM chimeric harmonized CPTAC3 d125dbc9-693c-401e-9ac5-30518915988f 589754d529600504e85fbd5c2fe82219 {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.RNA-Seq.genomic.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.genomic.gdc_realn.bam 5965734235 BAM genomic harmonized CPTAC3 cd9f73fa-d5db-4481-9068-723b83efa28e f09d8025a54a2b9883cf9a8f6c766241 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.RNA-Seq.genomic.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.genomic.gdc_realn.bam 10790885733 BAM genomic harmonized CPTAC3 f6a4a2c0-ec7e-41f7-81e2-bf078b62e06b 53fa69df79cf600c2ccd85f670bdde34 {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.RNA-Seq.S10_L008_R1.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R1_001.fastq.gz 2986432905 FASTQ S10_L008_R1 submitted_unaligned CPTAC3 915028f8-7517-4923-8996-fff79f9784eb 36e801a34365f051dc59f137e3516471 {"aliquot_tag": "ALQ_c9e7d24f", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.RNA-Seq.S10_L008_R2.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R2_001.fastq.gz 3203480807 FASTQ S10_L008_R2 submitted_unaligned CPTAC3 a8c2e00a-5ec4-4508-bc41-f40225e52b81 7cd2cb4e1f60ae98464073b0a33eff71 {"aliquot_tag": "ALQ_c9e7d24f", "sample": "S10", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.RNA-Seq.S21_L004_R1.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R1_001.fastq.gz 4902909161 FASTQ S21_L004_R1 submitted_unaligned CPTAC3 6e684ad0-928d-4101-ba28-8e18341d9695 114dd188e3a8c340f70051b045743726 {"aliquot_tag": "ALQ_46a727ef", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.RNA-Seq.S21_L004_R2.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R2_001.fastq.gz 5455863898 FASTQ S21_L004_R2 submitted_unaligned CPTAC3 c9ce9ba8-601f-4b60-bdc3-385c94c73b15 0559fd045a3bb14ba809285fe56d8a6a {"aliquot_tag": "ALQ_46a727ef", "sample": "S21", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.RNA-Seq.transcriptome.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.transcriptome.gdc_realn.bam 10679455563 BAM transcriptome harmonized CPTAC3 0f9b8d8c-13bf-4b9f-adbf-35a22bada350 7eb2bce67957dc4f293d4fea3c3be595 {"aliquot_tag": "ALQ_c9e7d24f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.RNA-Seq.transcriptome.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.transcriptome.gdc_realn.bam 13892365361 BAM transcriptome harmonized CPTAC3 594e6044-e079-479a-9b29-ba8393d2dca8 933d32e55d51e5cbff8af0cb8bfed69c {"aliquot_tag": "ALQ_46a727ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.WGS.N C3N-02925 HNSCC WGS blood_normal CPT0184590002 CPT0184590002.WholeGenome.RP-1303.bam 98581209706 BAM submitted_aligned CPTAC3 bdebee52-610e-4b84-b43d-90e1e28b00f0 abaa813966349f02a56b5ea55afcc8ca {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02925.WGS.N.hg38 C3N-02925 HNSCC WGS blood_normal CPT0184590002 fb9ebe30-a94e-470e-98d3-cdfb882d98bf_wgs_gdc_realn.bam 161363574051 BAM harmonized CPTAC3 d107dfb0-a038-44f1-ac65-b3d844762778 703dd92e98fe616279b858a8df456465 {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02925.WGS.T C3N-02925 HNSCC WGS tumor CPT0184530006 CPT0184530006.WholeGenome.RP-1303.bam 66963526409 BAM submitted_aligned CPTAC3 1c73c245-2a82-497e-82d7-1db6ecaf8a64 01a8ce5f1654e3993df5928cc198aede {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.WGS.T.hg38 C3N-02925 HNSCC WGS tumor CPT0184530006 e6a975f9-9b1d-4714-840e-d4d664e878e0_wgs_gdc_realn.bam 95095125893 BAM harmonized CPTAC3 5ebeca67-9355-4e00-976e-335f9bcede34 7dff51083701e91c570cb89700341014 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.WXS.A C3N-02925 HNSCC WXS tissue_normal CPT0184550006 CPT0184550006.WholeExome.RP-1303.bam 29071896393 BAM submitted_aligned CPTAC3 02c4e26b-7ebe-4130-86ef-85969597ca80 dcaf22bc038aee1c5b801c1ec5dfaa24 {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.WXS.A.hg38 C3N-02925 HNSCC WXS tissue_normal CPT0184550006 a7915475-4b25-4421-b0a8-18bfbd0a7be0_wxs_gdc_realn.bam 39720988677 BAM harmonized CPTAC3 0fabe8a0-3d2c-43f8-8a96-23a3f2b4d8c0 eefb4e20ebf9c2c16d44ccdd3a2e8ab2 {"aliquot_tag": "ALQ_5958cfde", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02925.WXS.N C3N-02925 HNSCC WXS blood_normal CPT0184590002 CPT0184590002.WholeExome.RP-1303.bam 29077345508 BAM submitted_aligned CPTAC3 b3a99c33-4b55-43d3-acc0-8b31bf56496a fefcafe14964f94a89fcff736c206107 {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02925.WXS.N.hg38 C3N-02925 HNSCC WXS blood_normal CPT0184590002 fb9ebe30-a94e-470e-98d3-cdfb882d98bf_wxs_gdc_realn.bam 40040992176 BAM harmonized CPTAC3 62092a85-dd9b-4735-8631-676673426d05 77e545785d844bf048c6131c347f549a {"aliquot_tag": "ALQ_9bc5e6c6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02925.WXS.T C3N-02925 HNSCC WXS tumor CPT0184530006 CPT0184530006.WholeExome.RP-1303.bam 26914911284 BAM submitted_aligned CPTAC3 8502e23c-26bf-4eab-8b7a-a8d6ab5eb6d1 2b92f32a614d510239df169ce5d42824 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02925.WXS.T.hg38 C3N-02925 HNSCC WXS tumor CPT0184530006 e6a975f9-9b1d-4714-840e-d4d664e878e0_wxs_gdc_realn.bam 37110672638 BAM harmonized CPTAC3 fc8b175c-fda9-4ab3-b09b-c7ddcb41f0d7 82db431e4648c3c813b723eda8679310 {"aliquot_tag": "ALQ_d6183a7e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.MethArray.Green.A C3N-02926 LUAD Methylation_Array tissue_normal CPT0184620006 203219640157_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 0dd03c4e-cee9-462e-a02c-a6b0ef878017 e553ed044b288d2ee35ffb776edf98a9 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.MethArray.Green.T C3N-02926 LUAD Methylation_Array tumor CPT0184600007 203271740156_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a8dee124-99b2-4ab3-ae28-c6e493899e87 4fbad4e1e2682d211133a7988cf38b34 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.MethArray.Red.A C3N-02926 LUAD Methylation_Array tissue_normal CPT0184620006 203219640157_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 c2387268-5de1-49be-8844-6d377741b4e0 ddb27c4e29e4a51579f46505e9676109 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.MethArray.Red.T C3N-02926 LUAD Methylation_Array tumor CPT0184600007 203271740156_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 a56be0e5-1ed4-4ce2-a296-78f73ba338cc f4cd54e996df4fe9d1fec429854e872e {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.miRNA-Seq.A.hg38 C3N-02926 LUAD miRNA-Seq tissue_normal CPT0184620009 51ef2de5-c6ae-4554-915b-840dc7897208_mirnaseq_gdc_realn.bam 283841836 BAM harmonized CPTAC3 3395a05c-8a39-4772-84d9-a817ef8177f2 947fcc3c43f2db34d11c275f43b318ed {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.miRNA-Seq.S38_L007_R1.T C3N-02926 LUAD miRNA-Seq tumor CPT0184600010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L007_R1_001.unaln.bam 264232189 BAM S38_L007_R1 submitted_unaligned CPTAC3 e95f8467-9e60-4631-bac0-14c379ac827e 6b6d98b8fc65f1e1c465b5b3ee90059e {"aliquot_tag": "ALQ_e754a674", "sample": "S38", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.miRNA-Seq.S8_L008_R1.A C3N-02926 LUAD miRNA-Seq tissue_normal CPT0184620009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L008_R1_001.unaln.bam 260801010 BAM S8_L008_R1 submitted_unaligned CPTAC3 a21c1fc0-5ff4-4552-a7c1-dedd5c729548 9dd13473b12ccc5bb6725e5ceb028506 {"aliquot_tag": "ALQ_fd537cf1", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.miRNA-Seq.T.hg38 C3N-02926 LUAD miRNA-Seq tumor CPT0184600010 4cc9550c-bc6b-4f1a-a27a-476305c0cf16_mirnaseq_gdc_realn.bam 285978270 BAM harmonized CPTAC3 642f241b-b45d-46af-b8f7-fed3f7c96936 7f8d2d538593aedabb994a1b85901863 {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.RNA-Seq.chimeric.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.chimeric.gdc_realn.bam 536912820 BAM chimeric harmonized CPTAC3 cc88caa6-414d-4b5f-a667-7b8470625ee6 3ca618f049da632d56b257cdc33f9cc1 {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.RNA-Seq.chimeric.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.chimeric.gdc_realn.bam 49205626 BAM chimeric harmonized CPTAC3 25231ce7-79ef-4bbb-a307-b260afa8c6c4 5f6a0dd8055476c589d433fedc50da56 {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.RNA-Seq.genomic.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.genomic.gdc_realn.bam 10420755733 BAM genomic harmonized CPTAC3 a2089caf-485f-4bb0-bbd6-2b84fb084b5f b41e442fbef04b63d42d847c2a89be8b {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.RNA-Seq.genomic.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.genomic.gdc_realn.bam 9005692680 BAM genomic harmonized CPTAC3 bb035ffe-da7d-400f-a5d5-2ecb3d16908b c7e3277e46a994d08f08ade846b37dce {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.RNA-Seq.S15_L008_R1.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R1_001.fastq.gz 4426188362 FASTQ S15_L008_R1 submitted_unaligned CPTAC3 a37360b8-4dc7-47b2-b3e6-586e2c4a63a0 826ad62daad34fc3051489aed7c096e1 {"aliquot_tag": "ALQ_fd537cf1", "sample": "S15", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.RNA-Seq.S15_L008_R2.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R2_001.fastq.gz 4947590374 FASTQ S15_L008_R2 submitted_unaligned CPTAC3 f85992a0-482c-4586-8a0b-2fe413c5a1df 70589b5001ee66a578f4998275537578 {"aliquot_tag": "ALQ_fd537cf1", "sample": "S15", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.RNA-Seq.S9_L003_R1.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R1_001.fastq.gz 4227498254 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 8c735238-ff8f-4225-9037-c73c9fede880 f159a0eb7234ccd307cb74a2b1b4047c {"aliquot_tag": "ALQ_e754a674", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.RNA-Seq.S9_L003_R2.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R2_001.fastq.gz 4442365729 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 8ece369c-6b17-4704-aa75-e5f5414c41c7 cf7324e92d3568b8a615139d30ef747e {"aliquot_tag": "ALQ_e754a674", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.RNA-Seq.transcriptome.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.transcriptome.gdc_realn.bam 10433877480 BAM transcriptome harmonized CPTAC3 534fcbf3-03af-4add-a16e-97b7d92c0986 b6bee7f2a287357f5bf0cb625c85f6a0 {"aliquot_tag": "ALQ_fd537cf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.RNA-Seq.transcriptome.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.transcriptome.gdc_realn.bam 9517594701 BAM transcriptome harmonized CPTAC3 e254d609-160d-4f1e-be0d-e3ec4c756852 4043211c51bda874c08c19d8c54db298 {"aliquot_tag": "ALQ_e754a674", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.WGS.N C3N-02926 LUAD WGS blood_normal CPT0184660002 CPT0184660002.WholeGenome.RP-1303.bam 130000214473 BAM submitted_aligned CPTAC3 dcde9761-e0c0-4237-bf90-601a8108d48b 50c410337fe25d5ac9c11fad6ac62f6f {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02926.WGS.N.hg38 C3N-02926 LUAD WGS blood_normal CPT0184660002 93551a24-2ecf-45ff-ae4f-f3f79cc7c601_wgs_gdc_realn.bam 188891330736 BAM harmonized CPTAC3 24e2373f-2af0-41a1-a22a-861910f265b6 b77ae51dc9d6f3821c6d38c5ac1495ba {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02926.WGS.T C3N-02926 LUAD WGS tumor CPT0184600007 CPT0184600007.WholeGenome.RP-1303.bam 125404030083 BAM submitted_aligned CPTAC3 55af6119-01d9-45c2-aa58-a60e0c473eb9 1cba7df019aee52440de1e651f4b3ef4 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.WGS.T.hg38 C3N-02926 LUAD WGS tumor CPT0184600007 7720fcab-9129-4782-ae23-99aa02e82c93_wgs_gdc_realn.bam 180852308137 BAM harmonized CPTAC3 bba86495-25f2-45c5-bbea-c0552ba15d00 4a7a3ba050b54b302bb99663c31d3d07 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.WXS.A C3N-02926 LUAD WXS tissue_normal CPT0184620006 CPT0184620006.WholeExome.RP-1303.bam 27893488282 BAM submitted_aligned CPTAC3 2b6399d0-2b05-45de-8c63-69d9421c20ab b604d2aae9f55063eeb96fe8890f2148 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.WXS.A.hg38 C3N-02926 LUAD WXS tissue_normal CPT0184620006 cba249c1-15b6-48e4-be42-334091f47e60_wxs_gdc_realn.bam 38416367277 BAM harmonized CPTAC3 d71e6021-8f20-47f2-b2f4-4eed898a867a 1d6f95f25deaedb199536ed2a84742a4 {"aliquot_tag": "ALQ_6dec6160", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02926.WXS.N C3N-02926 LUAD WXS blood_normal CPT0184660002 CPT0184660002.WholeExome.RP-1303.bam 25105661850 BAM submitted_aligned CPTAC3 18234507-c347-4d9e-a2d5-21b5516a0312 611c3401c9e8aaa0f5d4635622266ee1 {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02926.WXS.N.hg38 C3N-02926 LUAD WXS blood_normal CPT0184660002 93551a24-2ecf-45ff-ae4f-f3f79cc7c601_wxs_gdc_realn.bam 34869100384 BAM harmonized CPTAC3 7b570ea8-78e7-4282-b970-2dc4af85ef8b 5a58520cbd068de4701d34fc59f05d1a {"aliquot_tag": "ALQ_9f0103b9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02926.WXS.T C3N-02926 LUAD WXS tumor CPT0184600007 CPT0184600007.WholeExome.RP-1303.bam 24312204908 BAM submitted_aligned CPTAC3 057d9019-8371-4792-9c7d-2590744153fe e5a464b0ddbb37d5eaf63fbc32cac5fb {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02926.WXS.T.hg38 C3N-02926 LUAD WXS tumor CPT0184600007 7720fcab-9129-4782-ae23-99aa02e82c93_wxs_gdc_realn.bam 32962320165 BAM harmonized CPTAC3 02622a2b-d0fa-4356-927a-8f5a939ffae6 8b3bce88cc5816b74c9bbc0873323225 {"aliquot_tag": "ALQ_602b0296", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.MethArray.Green.A C3N-02928 LUAD Methylation_Array tissue_normal CPT0184690006 203561450017_R07C01_Grn.idat 13676209 IDAT Green NA CPTAC3 4989213c-6e0b-408a-bacb-8463b6507adb 8649aa332486052e3767bade79721978 {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.MethArray.Green.T C3N-02928 LUAD Methylation_Array tumor CPT0184670007 203561450020_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8e13f04d-c6f1-4071-b937-3b24c82e31fd 0b1fa25029f0c49cfc3427a25c07757f {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.MethArray.Red.A C3N-02928 LUAD Methylation_Array tissue_normal CPT0184690006 203561450017_R07C01_Red.idat 13676209 IDAT Red NA CPTAC3 718150e7-eab7-44c5-805c-601b67bde745 daf062110addf832cddf0b5dda03f4d6 {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.MethArray.Red.T C3N-02928 LUAD Methylation_Array tumor CPT0184670007 203561450020_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 c5689c2e-c7c5-41fd-b884-cdcdf7e36cc3 87dc3f684f220829f9fb63fb521643b6 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.miRNA-Seq.A.hg38 C3N-02928 LUAD miRNA-Seq tissue_normal CPT0184690009 31f05814-cb07-409a-bfe7-6d15b3cf470d_mirnaseq_gdc_realn.bam 301798891 BAM harmonized CPTAC3 f2caff1f-f3dd-432e-a5e8-627adb5a60b6 56b4f660b0fd91e3f13bfb7eb37fa0ff {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.miRNA-Seq.S18_L005_R1.T C3N-02928 LUAD miRNA-Seq tumor CPT0184670010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGTACG_S18_L005_R1_001.unaln.bam 202775023 BAM S18_L005_R1 submitted_unaligned CPTAC3 8e039d9a-5a77-4ad8-86e9-31482ae46eb8 da6e500dd4953e26f2c9484f08121790 {"aliquot_tag": "ALQ_55747a64", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.miRNA-Seq.S33_L007_R1.A C3N-02928 LUAD miRNA-Seq tissue_normal CPT0184690009 190712_UNC32-K00270_0192_BH7HL3BBXY_TAGCTT_S33_L007_R1_001.unaln.bam 264918117 BAM S33_L007_R1 submitted_unaligned CPTAC3 aea460f0-46d6-4e22-a736-15fe81ab5488 6efe12b06275c66ab36b1383a943352b {"aliquot_tag": "ALQ_8a834de0", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.miRNA-Seq.T.hg38 C3N-02928 LUAD miRNA-Seq tumor CPT0184670010 7c6b4cdb-ee4d-49e1-a071-7159b46216a0_mirnaseq_gdc_realn.bam 225892193 BAM harmonized CPTAC3 cd042563-635d-42f3-8620-ea6c7633570c 09fedf45f038a7ea8ea89ee091a94323 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.RNA-Seq.chimeric.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.chimeric.gdc_realn.bam 73507639 BAM chimeric harmonized CPTAC3 01803aa6-d2af-468c-b83f-e982e7f6b1f2 9403240607f1b75030d33e58f9de01cc {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.RNA-Seq.chimeric.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.chimeric.gdc_realn.bam 25758965 BAM chimeric harmonized CPTAC3 ea4b99d6-a134-48b4-8974-d2780151acc2 838b9675edad59d45c90dd03ecd12328 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.RNA-Seq.genomic.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.genomic.gdc_realn.bam 9084520765 BAM genomic harmonized CPTAC3 0bad852e-afb0-4325-bd1d-8195ee856e14 65c9ca0dafd4a39f63f3f43fc668b37e {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.RNA-Seq.genomic.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.genomic.gdc_realn.bam 10645104083 BAM genomic harmonized CPTAC3 eef71d19-ab5c-44af-bec5-57284de2fa29 47da89a07609d21939ba7d055c82d8c7 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.RNA-Seq.S2_L001_R1.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R1_001.fastq.gz 3232064640 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 4c972fd4-0696-4fd5-869c-7beb89674856 031e46f27ac173193e1e0e7961bb2e7f {"aliquot_tag": "ALQ_55747a64", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.RNA-Seq.S2_L001_R2.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R2_001.fastq.gz 3685834698 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 a3f15a80-ecce-40d1-bbd4-5f1d2d7efbde 876b292ba3528b482e2a2ca12665d342 {"aliquot_tag": "ALQ_55747a64", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.RNA-Seq.S5_L002_R1.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R1_001.fastq.gz 3911326573 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 9b92e501-dbc4-4f09-b7eb-e9b752a60ecd c4ea496cea7d05e18f13aa0014b18c27 {"aliquot_tag": "ALQ_8a834de0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.RNA-Seq.S5_L002_R2.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R2_001.fastq.gz 4217991316 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 8182cae1-45d1-42d4-92b8-523b666bb444 667fb9252babf1dc83a9e401d39b04ca {"aliquot_tag": "ALQ_8a834de0", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.RNA-Seq.transcriptome.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.transcriptome.gdc_realn.bam 9045226050 BAM transcriptome harmonized CPTAC3 f8ae91e0-fcdd-4b42-94f3-211d5dd0587e 705907426b70ba8c3122cc3abdea3299 {"aliquot_tag": "ALQ_8a834de0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.RNA-Seq.transcriptome.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.transcriptome.gdc_realn.bam 7788787204 BAM transcriptome harmonized CPTAC3 ba1a3a9f-6490-4dd3-839a-aae12836d5a1 9b1489e56c196208565c4dcb5e55d450 {"aliquot_tag": "ALQ_55747a64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.WGS.N C3N-02928 LUAD WGS blood_normal CPT0184730002 CPT0184730002.WholeGenome.RP-1303.bam 61533454482 BAM submitted_aligned CPTAC3 c80cd6f3-13a3-4f22-88dc-cd716609a2e6 c49703bf72add2c06bc6b88731b3ff6a {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02928.WGS.N.hg38 C3N-02928 LUAD WGS blood_normal CPT0184730002 ffa07dac-34a4-4540-9bf0-02dcfb32a04b_wgs_gdc_realn.bam 89222048185 BAM harmonized CPTAC3 66686e8c-66cf-4bb7-a77e-0cafa77c4750 8b804eb2553130fe252de917f9131186 {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02928.WGS.T C3N-02928 LUAD WGS tumor CPT0184670007 CPT0184670007.WholeGenome.RP-1303.bam 78013736050 BAM submitted_aligned CPTAC3 16aed900-5fa1-489b-b48d-e8ab97d5b3fc 4994fb1bf1ccf0c7f16d719a3d2431f5 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.WGS.T.hg38 C3N-02928 LUAD WGS tumor CPT0184670007 bd687106-979e-47ec-9841-64c8b6c99d8a_wgs_gdc_realn.bam 114054733628 BAM harmonized CPTAC3 8019441a-99f8-48d3-802f-3c88a1e75883 392204397d1b48bd87476767d1d62b64 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.WXS.A C3N-02928 LUAD WXS tissue_normal CPT0184690006 CPT0184690006.WholeExome.RP-1303.bam 17754335995 BAM submitted_aligned CPTAC3 292a7718-192a-4663-ba5f-91aa1ffc246f 161bdf1d3cf623276d07a4b07cf5ca0b {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.WXS.A.hg38 C3N-02928 LUAD WXS tissue_normal CPT0184690006 0689087e-1275-46bf-90e0-c20db204d564_wxs_gdc_realn.bam 24716172022 BAM harmonized CPTAC3 5cd5a1a6-6b4f-4ae4-852b-6d3d6983c036 df1e9982a36990e045854b68f51e3aff {"aliquot_tag": "ALQ_1a3c5071", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02928.WXS.N C3N-02928 LUAD WXS blood_normal CPT0184730002 CPT0184730002.WholeExome.RP-1303.bam 27184062755 BAM submitted_aligned CPTAC3 1ac800bc-e0b5-46d7-bfd2-818c635b5c6e e71e144db91023021348658d1b91b882 {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02928.WXS.N.hg38 C3N-02928 LUAD WXS blood_normal CPT0184730002 ffa07dac-34a4-4540-9bf0-02dcfb32a04b_wxs_gdc_realn.bam 37381075774 BAM harmonized CPTAC3 ab19a326-7d5c-4e69-b669-49dd0e238120 a22321a5a2a22a968547a781473ba0b9 {"aliquot_tag": "ALQ_9cbd5f6c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02928.WXS.T C3N-02928 LUAD WXS tumor CPT0184670007 CPT0184670007.WholeExome.RP-1303.bam 18295179909 BAM submitted_aligned CPTAC3 988d6707-4c7f-4e35-857d-458da8aae688 08ebb4541c5e91f1b8ffd83611434a3f {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02928.WXS.T.hg38 C3N-02928 LUAD WXS tumor CPT0184670007 bd687106-979e-47ec-9841-64c8b6c99d8a_wxs_gdc_realn.bam 25235581139 BAM harmonized CPTAC3 9367b8c0-5e22-4a20-818f-504cf7073fb7 6120bc2a6216277804becd4f5af67d32 {"aliquot_tag": "ALQ_d20bde86", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.MethArray.Green.A C3N-02929 LUAD Methylation_Array tissue_normal CPT0184760006 203219720203_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 96f908e6-2f75-494f-afcf-8118196e2f16 9686ad53c404be2398e0957ee40f473b {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.MethArray.Green.T C3N-02929 LUAD Methylation_Array tumor CPT0184740007 203219760065_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5214be05-7a73-41d7-803e-0bf5f7b53255 a9b2463e3006b43ce9b747139e76dd68 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.MethArray.Red.A C3N-02929 LUAD Methylation_Array tissue_normal CPT0184760006 203219720203_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 3131d8fb-5967-4dee-8b06-42d07037fbcf 4fed8061a70719f75efdbe3770cc9be0 {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.MethArray.Red.T C3N-02929 LUAD Methylation_Array tumor CPT0184740007 203219760065_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 4c40c9c3-ad58-4b24-8a40-8e0a43597820 209ca895bfe6aa7584618a7bc748e10b {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.miRNA-Seq.A.hg38 C3N-02929 LUAD miRNA-Seq tissue_normal CPT0184760009 bacff72b-35bb-4d68-ac47-cc2fd96a515a_mirnaseq_gdc_realn.bam 235714601 BAM harmonized CPTAC3 c3ff5a38-3872-4633-b380-8268f9166098 8be3bb7b901667fe3e400e61b156ef5b {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.miRNA-Seq.S16_L004_R1.A C3N-02929 LUAD miRNA-Seq tissue_normal CPT0184760009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGTCA_S16_L004_R1_001.unaln.bam 210550525 BAM S16_L004_R1 submitted_unaligned CPTAC3 1b14277f-6bfa-4330-b3ff-1ae0ce0d4207 dd0edeabdab4cf0f402cff519d0e9c43 {"aliquot_tag": "ALQ_c38f0994", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.miRNA-Seq.S40_L007_R1.T C3N-02929 LUAD miRNA-Seq tumor CPT0184740010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L007_R1_001.unaln.bam 259525760 BAM S40_L007_R1 submitted_unaligned CPTAC3 58566506-a61f-470d-a4ae-59b82793c08d 47b1437ce65d34fb1f5ec46b9f9196f7 {"aliquot_tag": "ALQ_d988d311", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.miRNA-Seq.T.hg38 C3N-02929 LUAD miRNA-Seq tumor CPT0184740010 d42c51a3-93f8-4177-a82b-7a8421c2fad7_mirnaseq_gdc_realn.bam 283480965 BAM harmonized CPTAC3 c52bc40a-cafa-4023-9d50-01eb07f77fb8 71f7baba357df8ef1c8cef7e0de8f630 {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.RNA-Seq.chimeric.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.chimeric.gdc_realn.bam 33863903 BAM chimeric harmonized CPTAC3 6bcb8441-a6e7-4ff5-9031-05f7bb2220f5 71bc3ad59674ead0bdd5b5e117e7a156 {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.RNA-Seq.chimeric.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.chimeric.gdc_realn.bam 34986018 BAM chimeric harmonized CPTAC3 84e5ced3-3897-4a85-bcfd-e803913108a7 fc6c4cf77fe9adb34e777a1978af03d7 {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.RNA-Seq.genomic.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.genomic.gdc_realn.bam 7529693940 BAM genomic harmonized CPTAC3 9f361ebb-d288-4553-9d89-892bd4ffa95c d33feecdf6484ac5b421d22edebf7a4a {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.RNA-Seq.genomic.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.genomic.gdc_realn.bam 9282145949 BAM genomic harmonized CPTAC3 21df8a07-bf32-4c09-be3f-9ee21613d65b 23237912abc2a14c308c0a7273297bde {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.RNA-Seq.S10_L003_R1.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R1_001.fastq.gz 4007957697 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 8e37dcc6-a449-4543-acbd-05487d6a7552 7c12e212795d4baddaef24f95b8555b1 {"aliquot_tag": "ALQ_d988d311", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.RNA-Seq.S10_L003_R2.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R2_001.fastq.gz 4033348066 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 6471a9ad-53c2-440a-bd9e-4fb462b0128d 3e79712d91bd90bac5fd7447e225a1c4 {"aliquot_tag": "ALQ_d988d311", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.RNA-Seq.S8_L002_R1.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R1_001.fastq.gz 3468743452 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 45754be4-970e-4c89-a322-bc9e6890a22f a295ca374813017c5b731076fb4140b4 {"aliquot_tag": "ALQ_c38f0994", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.RNA-Seq.S8_L002_R2.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R2_001.fastq.gz 3684972977 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 d85640d9-4b91-4181-a3ee-3e35b31164da e85588d7a3689b84da381b7bb7171f5e {"aliquot_tag": "ALQ_c38f0994", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.RNA-Seq.transcriptome.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.transcriptome.gdc_realn.bam 8742393326 BAM transcriptome harmonized CPTAC3 05b62da0-9314-4a46-aefc-e152d62fac9c 0ee7faf8e54c6810e96ba8f815a08ed0 {"aliquot_tag": "ALQ_c38f0994", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.RNA-Seq.transcriptome.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.transcriptome.gdc_realn.bam 7897501868 BAM transcriptome harmonized CPTAC3 5b83f828-9e96-477f-82d3-a13ccf4e1285 eb383e3c21f97ef9459f1ce18976acdb {"aliquot_tag": "ALQ_d988d311", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.WGS.N C3N-02929 LUAD WGS blood_normal CPT0184800002 CPT0184800002.WholeGenome.RP-1303.bam 104459068175 BAM submitted_aligned CPTAC3 5544adbe-f027-402e-b086-0081d1864c7e 31f099a48fd64d676974861ba0bad74a {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02929.WGS.N.hg38 C3N-02929 LUAD WGS blood_normal CPT0184800002 414fe559-b577-4021-988d-edf42348185d_wgs_gdc_realn.bam 151886995124 BAM harmonized CPTAC3 e1e37906-ac43-42fe-af73-58ceb9e2b10b d088fe6c41fd56d58a0fbcec9664cdc9 {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02929.WGS.T C3N-02929 LUAD WGS tumor CPT0184740007 CPT0184740007.WholeGenome.RP-1303.bam 134531338798 BAM submitted_aligned CPTAC3 686ce479-90d8-41e8-8e61-a6554954a257 1f577347d469730c3adf5a744a0ce196 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.WGS.T.hg38 C3N-02929 LUAD WGS tumor CPT0184740007 94f45d68-628c-4d05-a253-85d4a19284e6_wgs_gdc_realn.bam 193812907750 BAM harmonized CPTAC3 c4c733b6-7a7a-47ac-9904-5095233a5a25 d0f09c1d0162cee05ce046fb0cb76ef2 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.WXS.A C3N-02929 LUAD WXS tissue_normal CPT0184760006 CPT0184760006.WholeExome.RP-1303.bam 20626072962 BAM submitted_aligned CPTAC3 046a0e84-f491-4939-87b6-87302c0aa15e ec272c951a411ed38e52dc489dcbeb71 {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.WXS.A.hg38 C3N-02929 LUAD WXS tissue_normal CPT0184760006 c8ae16a8-7445-4dab-8ed2-1f1c7dbc0129_wxs_gdc_realn.bam 28258632727 BAM harmonized CPTAC3 51dcdbc8-1789-49f2-9187-44ce36674c06 3f1936c5ef508be7d07a680341c374ce {"aliquot_tag": "ALQ_53301405", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02929.WXS.N C3N-02929 LUAD WXS blood_normal CPT0184800002 CPT0184800002.WholeExome.RP-1303.bam 23568609888 BAM submitted_aligned CPTAC3 701c1282-62c9-4ba4-837a-554746235d32 3af8ef71c040634aa3d315ab0c8b3e3c {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02929.WXS.N.hg38 C3N-02929 LUAD WXS blood_normal CPT0184800002 414fe559-b577-4021-988d-edf42348185d_wxs_gdc_realn.bam 32190584639 BAM harmonized CPTAC3 864a3d57-5ac4-4c39-9e16-6720f7985633 a3600f5f8ec2bb38fb5fe319b5279719 {"aliquot_tag": "ALQ_2a4b9769", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02929.WXS.T C3N-02929 LUAD WXS tumor CPT0184740007 CPT0184740007.WholeExome.RP-1303.bam 18398967738 BAM submitted_aligned CPTAC3 2a247459-970c-47fa-90a5-ae276f4f866a 51dc85176b266b75909efbc690216008 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02929.WXS.T.hg38 C3N-02929 LUAD WXS tumor CPT0184740007 94f45d68-628c-4d05-a253-85d4a19284e6_wxs_gdc_realn.bam 25768139029 BAM harmonized CPTAC3 39b71d68-828c-4a9c-a69e-ea091172401e e210fdd93dec879ae72190601fe05f92 {"aliquot_tag": "ALQ_5ef777f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.ANN_d565482f.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.chimeric.gdc_realn.bam 244737706 BAM chimeric harmonized CPTAC3 5964dade-522f-4403-a865-9ee8ba13bce4 f26bb25ee79852f6fa2f6f1cf7e9ebe2 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.ANN_d565482f.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.genomic.gdc_realn.bam 12934957545 BAM genomic harmonized CPTAC3 cc56c7bd-bcfb-4feb-98ba-d70c3d649b9c f526ef70bac4f2aa605e77404ef79480 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.ANN_d565482f.RNA-Seq.S5_L006_R1.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R1_001.fastq.gz 5164758172 FASTQ S5_L006_R1 submitted_unaligned CPTAC3 6d20ad09-33cb-4eb3-bd90-a089cdac81f1 f742a976cf1c846ddd3c86d992d57247 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.ANN_d565482f.RNA-Seq.S5_L006_R2.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R2_001.fastq.gz 5580827454 FASTQ S5_L006_R2 submitted_unaligned CPTAC3 606995fe-dd65-4648-bffa-23b2b9b37677 45d5f319c2b08d68bc599a927adfbde4 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S5", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.ANN_d565482f.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.transcriptome.gdc_realn.bam 13975149243 BAM transcriptome harmonized CPTAC3 722b9374-2ec6-4a42-bd68-688fea14d19f 7e61a2c52867eb91fa496a97c79660c0 {"aliquot_tag": "ANN_d565482f", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_3b6b2903.WXS.T C3N-02930 PDA WXS tumor CPT0184810036 CPT0184810036.WholeExome.RP-1303.bam 24027429743 BAM submitted_aligned CPTAC3 68d6d8e3-e2bb-45d1-b46a-4a25d0ab45e8 e30640729ebb82042399686c5c50e00c {"aliquot_tag": "DUP_3b6b2903", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_3b6b2903.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810036 196d2508-1e9a-4066-852b-db2b6d675026_wxs_gdc_realn.bam 33641984581 BAM harmonized CPTAC3 b2537afb-b18b-41c5-b14f-3e0328300b01 a9fd83cd22fa254f075323ef27645607 {"aliquot_tag": "DUP_3b6b2903", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_4404b4b.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.chimeric.gdc_realn.bam 406730343 BAM chimeric harmonized CPTAC3 2f09aba8-039e-4537-a1df-260b97ea0505 b1a5124bc5246757e9a5e2ae3d18155d {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_4404b4b.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.genomic.gdc_realn.bam 6808360565 BAM genomic harmonized CPTAC3 70c69d58-589e-4ed1-8bd4-27f23e6edb05 ac18130c0b3165cfb4af8408dd76486c {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_4404b4b.RNA-Seq.S13_L005_R1.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R1_001.fastq.gz 3132344280 FASTQ S13_L005_R1 submitted_unaligned CPTAC3 9ec81a17-9216-47db-8248-fbf2bc09ab44 b5a870a059ee2a0fe53f2db227ff97ba {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_4404b4b.RNA-Seq.S13_L005_R2.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R2_001.fastq.gz 3395584601 FASTQ S13_L005_R2 submitted_unaligned CPTAC3 f1d2432f-8b7b-4595-90a9-c5f69fc1373f afd248fde572fec3a5a68108e2869f60 {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_4404b4b.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.transcriptome.gdc_realn.bam 8711958378 BAM transcriptome harmonized CPTAC3 c94b25f2-53a2-4d54-abe3-3c3631ad730d 14b33f08dcb4382d2627c2766606dd0b {"aliquot_tag": "DUP_4404b4b", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_4c6c1995.WXS.T C3N-02930 PDA WXS tumor CPT0184810037 CPT0184810037.WholeExome.RP-1303.bam 26427797846 BAM submitted_aligned CPTAC3 534eb6f6-6d45-421a-9012-7d63e3328c9e 12914a7f98577225005ef77951d22397 {"aliquot_tag": "DUP_4c6c1995", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_4c6c1995.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810037 0f5cd2c3-cc7e-46aa-b49f-306ce900c2e6_wxs_gdc_realn.bam 36671323296 BAM harmonized CPTAC3 0b550ac4-314b-48d9-b6c5-529373e75244 0a6e87876cc5d226cb1bd14a0a12cd94 {"aliquot_tag": "DUP_4c6c1995", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_742abfc4.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.chimeric.gdc_realn.bam 492229252 BAM chimeric harmonized CPTAC3 39803b8d-379a-4a4f-b37a-1553bf7521ea 120d59465175ef594056efdcf6a9bba2 {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_742abfc4.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.genomic.gdc_realn.bam 8791491817 BAM genomic harmonized CPTAC3 cbdde07f-2faa-46cc-a32a-d0d5f30fb598 2de6a2bdade3a2adf7626554521bf464 {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_742abfc4.RNA-Seq.S13_L004_R1.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 4111601063 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 b4128669-cb33-4f8d-ba06-bc95a0ddec89 cd736514144d6737ad71de827ea4045b {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_742abfc4.RNA-Seq.S13_L004_R2.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4449924393 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 1af7d724-00a6-4f53-976c-2ce4490af71b 9b97a239defcf9a4e8c783517288ebea {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_742abfc4.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.transcriptome.gdc_realn.bam 9499263695 BAM transcriptome harmonized CPTAC3 e9278635-e4d7-4e6e-bb84-da357a3528cd 6aaa4e066bdc24f55523e67cf6ca8f6a {"aliquot_tag": "DUP_742abfc4", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_908e7907.RNA-Seq.chimeric.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.chimeric.gdc_realn.bam 71706368 BAM chimeric harmonized CPTAC3 95b09035-52fe-4076-82cf-f36b9d365969 13b5e89e9cd073defb40fc28ed0cfab7 {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_908e7907.RNA-Seq.genomic.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.genomic.gdc_realn.bam 7243600398 BAM genomic harmonized CPTAC3 820210cc-d1ef-4fc5-878e-e035062b009a dda5f1148caa912974120b4386c6d8c0 {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_908e7907.RNA-Seq.S12_L003_R1.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R1_001.fastq.gz 2560501420 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 8264bd80-e4a0-4a2c-8408-2bfd66488507 9095ab32e5484cda0fae03dc07de7d2c {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_908e7907.RNA-Seq.S12_L003_R2.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R2_001.fastq.gz 2928252932 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 2dc602cb-63e6-4a88-9894-a25db0e1579e d82e3b8b3b38778706aacc100a5709ae {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_908e7907.RNA-Seq.transcriptome.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.transcriptome.gdc_realn.bam 6483025551 BAM transcriptome harmonized CPTAC3 e8bae17a-b03d-4d8c-a119-62e1ac9341c9 fc853eb5a64c325538c4003d87ff9252 {"aliquot_tag": "DUP_908e7907", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_986b4b79.WXS.N C3N-02930 PDA WXS blood_normal CPT0184870002 CPT0184870002.WholeExome.RP-1303.bam 28812687466 BAM submitted_aligned CPTAC3 992a9872-6083-4e55-a965-d1b155e5b40b 119dcad76c636d32f270c3ce7a1b1060 {"aliquot_tag": "DUP_986b4b79", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02930.DUP_986b4b79.WXS.N.hg38 C3N-02930 PDA WXS blood_normal CPT0184870002 b784e42c-5dcb-4048-a06b-19e4406b4463_wxs_gdc_realn.bam 40257197690 BAM harmonized CPTAC3 294e7e56-c709-478f-bb12-dfefa496f3a3 0ab7e7097152ca55115a0bd70fa34f4b {"aliquot_tag": "DUP_986b4b79", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02930.DUP_a6135764.RNA-Seq.chimeric.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.chimeric.gdc_realn.bam 345596713 BAM chimeric harmonized CPTAC3 a556b7d5-9e13-4618-b684-89c2fed282cc b50e3fdeb47d1e6f9376c6919106369e {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_a6135764.RNA-Seq.genomic.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.genomic.gdc_realn.bam 10492684793 BAM genomic harmonized CPTAC3 69c6b6fd-1380-47d3-9aa7-40072afca3cf fbb95b55cb248220f02611cd714b104b {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_a6135764.RNA-Seq.S16_L005_R1.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R1_001.fastq.gz 4406428554 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 b9133cec-ed9e-4b9f-8d4e-d850267d26f5 57967178f8112219c79bebf8370e4d21 {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_a6135764.RNA-Seq.S16_L005_R2.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R2_001.fastq.gz 4798004933 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 fb7abba1-1af9-4e67-b594-70d813cff2c5 7d788eed23310f940bb89b64c3ffdd68 {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_a6135764.RNA-Seq.transcriptome.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.transcriptome.gdc_realn.bam 11452239027 BAM transcriptome harmonized CPTAC3 504b3cde-fea4-458c-b74d-87523e3a2a29 7177cd6fd4084b1e31dd59fb71f5fd6a {"aliquot_tag": "DUP_a6135764", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02930.DUP_dcd30404.WXS.T C3N-02930 PDA WXS tumor CPT0184810038 CPT0184810038.WholeExome.RP-1303.bam 21753554456 BAM submitted_aligned CPTAC3 db71c494-050c-426e-b1f4-093bbeea206f d9098346a9e4c41a8a7a01fae36273d6 {"aliquot_tag": "DUP_dcd30404", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02930.DUP_dcd30404.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810038 00a57e9e-5c8e-47bc-a71d-d220116d32d0_wxs_gdc_realn.bam 30663764810 BAM harmonized CPTAC3 50ecb347-19a6-4724-9177-fdaa41c061a6 dac3f76e53500431556cf288aa8062ea {"aliquot_tag": "DUP_dcd30404", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02939.MethArray.Green.A C3N-02939 PDA Methylation_Array tissue_normal CPT0208500007 203561620159_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ecbf50fb-5c39-43e7-9f03-49129e62f019 635f52bf7e9e3a6f2a4f7caf84863cb3 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02939.MethArray.Green.T C3N-02939 PDA Methylation_Array tumor CPT0208480008 203561450008_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b16c21f2-afe6-4136-bf8d-19daee2e44fb 18ea732623ba16b582eaf932a8987b39 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.MethArray.Red.A C3N-02939 PDA Methylation_Array tissue_normal CPT0208500007 203561620159_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 b997ac95-9ad1-44d2-a8fa-08339c85018a 54d80fdf69f2ae5d341651a171e5f568 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02939.MethArray.Red.T C3N-02939 PDA Methylation_Array tumor CPT0208480008 203561450008_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 9fe6f13e-a2b2-4ee9-a630-51adc6429ead 1a3f2c3c2d0c3028e1f940f65377614a {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.miRNA-Seq.S9_L004_R1.T C3N-02939 PDA miRNA-Seq tumor CPT0208480011 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGGCG_S9_L004_R1_001.unaln.bam 137446607 BAM S9_L004_R1 submitted_unaligned CPTAC3 66779b53-72de-4036-8975-d4c1c9a27edb 4050dbc0804c913f3822d1e76e3b7c82 {"aliquot_tag": "ALQ_c023312c", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.miRNA-Seq.T.hg38 C3N-02939 PDA miRNA-Seq tumor CPT0208480011 21cc21ff-e338-49c4-871e-60088108aad4_mirnaseq_gdc_realn.bam 156064989 BAM harmonized CPTAC3 e884c325-e6e6-4dab-9f94-ee597aac12b6 886eb96d828c8c51f7cfa6e75c1605c0 {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.RNA-Seq.chimeric.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.chimeric.gdc_realn.bam 33470583 BAM chimeric harmonized CPTAC3 20ae67f0-8c0a-4961-af1f-e9c62229c78e 3d815072ceb45a4d0a2cb5ac9b28cbc5 {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.RNA-Seq.genomic.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.genomic.gdc_realn.bam 8342862575 BAM genomic harmonized CPTAC3 ae55e835-ff8a-4e0b-b3ce-fb5c3ba0ebd8 5902984c673b1f831bcc42e413889cc2 {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.RNA-Seq.S2_L001_R1.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R1_001.fastq.gz 3906043882 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 ffd01218-e59c-4f40-8c84-4c195fd94a62 d6c97ce6930e61dec1808d4a17c9ba44 {"aliquot_tag": "ALQ_c023312c", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.RNA-Seq.S2_L001_R2.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R2_001.fastq.gz 4221871223 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 45a05eb7-ecdc-46f4-98f2-3f832344269f 9a22dd700b15427fbb7541a78ae97699 {"aliquot_tag": "ALQ_c023312c", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.RNA-Seq.transcriptome.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.transcriptome.gdc_realn.bam 11523593974 BAM transcriptome harmonized CPTAC3 102ee5b7-af73-4ba1-92c3-ea4b0dcc5ee7 0a10f1e3f99e0b17a0f5c5ce503a0a4f {"aliquot_tag": "ALQ_c023312c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.WGS.N C3N-02939 PDA WGS blood_normal CPT0208540002 CPT0208540002.WholeGenome.RP-1303.bam 72421600755 BAM submitted_aligned CPTAC3 4771a883-04a4-4c46-afcd-5047c6750e0c df67b8132c986870befcbbb7529fc573 {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02939.WGS.N.hg38 C3N-02939 PDA WGS blood_normal CPT0208540002 786fe640-bffb-4258-9f8e-1fd04e0500bb_wgs_gdc_realn.bam 105810346763 BAM harmonized CPTAC3 9c481c93-8369-4946-b619-4b8e541dbdc1 6c62be682a4ffe872b1a7550db31963c {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02939.WGS.T C3N-02939 PDA WGS tumor CPT0208480008 CPT0208480008.WholeGenome.RP-1303.bam 114037483343 BAM submitted_aligned CPTAC3 d9f127b6-9afc-4337-89e0-8fe83d4751d2 4f3c7e46a2f43c05af742dc099bc3878 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.WGS.T.hg38 C3N-02939 PDA WGS tumor CPT0208480008 ab9266b0-8f9a-414b-b1eb-13b2bf112be9_wgs_gdc_realn.bam 169078878676 BAM harmonized CPTAC3 1bdd3ad1-c4f2-47cd-aca3-9be754fc8425 1528347f2ccaee861f1b7394a4f4d272 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.WXS.A C3N-02939 PDA WXS tissue_normal CPT0208500007 CPT0208500007.WholeExome.RP-1303.bam 18536450389 BAM submitted_aligned CPTAC3 3207a14f-3766-4de4-8ef9-11d9d5e162f1 06854014bbc3a14a733ebddc4f7bfdf9 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02939.WXS.A.hg38 C3N-02939 PDA WXS tissue_normal CPT0208500007 54645fb4-765f-440b-bf28-8c6afaa196a1_wxs_gdc_realn.bam 25935246671 BAM harmonized CPTAC3 cae751ef-8ced-4189-a610-36667748c4ba efd27740eb8d67ecba6323465927e316 {"aliquot_tag": "ALQ_cb773d3c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02939.WXS.N C3N-02939 PDA WXS blood_normal CPT0208540002 CPT0208540002.WholeExome.RP-1303.bam 26536229696 BAM submitted_aligned CPTAC3 54a45716-8d17-48e4-be6c-07582c85c249 cc730ff35a80fc3e4221579b98c8f8d6 {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02939.WXS.N.hg38 C3N-02939 PDA WXS blood_normal CPT0208540002 786fe640-bffb-4258-9f8e-1fd04e0500bb_wxs_gdc_realn.bam 35602459773 BAM harmonized CPTAC3 e5040d7c-8617-4309-ab59-a6b5c3677706 2d9c3f18700c4ad2992f31a4b852c513 {"aliquot_tag": "ALQ_4e9d6f73", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02939.WXS.T C3N-02939 PDA WXS tumor CPT0208480008 CPT0208480008.WholeExome.RP-1303.bam 53875383988 BAM submitted_aligned CPTAC3 11f1eef9-cc77-4962-8a04-6bfdf3caf376 67e03ca494d94630960d259dfff851f1 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02939.WXS.T.hg38 C3N-02939 PDA WXS tumor CPT0208480008 ab9266b0-8f9a-414b-b1eb-13b2bf112be9_wxs_gdc_realn.bam 73672111659 BAM harmonized CPTAC3 cee54ffe-5697-4618-845b-ef9df77d4870 758b1d378eac412a5719b4ba1bded783 {"aliquot_tag": "ALQ_a0e4b8c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02940.MethArray.Green.T C3N-02940 PDA Methylation_Array tumor CPT0208550008 203561620159_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 d0c3c995-f9c6-40aa-a4a1-0c282556ae3d a95283211bdb2d9295312c5aa12302fb {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.MethArray.Red.T C3N-02940 PDA Methylation_Array tumor CPT0208550008 203561620159_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 eb4df7b6-cb87-4bc7-82b7-3bce44e42b0d c08c799c94a493b8f18ec68ebefcd38a {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.miRNA-Seq.S10_L004_R1.T C3N-02940 PDA miRNA-Seq tumor CPT0208550011 190712_UNC32-K00270_0192_BH7HL3BBXY_CATGGC_S10_L004_R1_001.unaln.bam 217144472 BAM S10_L004_R1 submitted_unaligned CPTAC3 ed9e8e30-267d-4701-b546-3d32dd07d4b5 7fcff98e647194ff127e214ea67c6677 {"aliquot_tag": "ALQ_f3ef2638", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.miRNA-Seq.T.hg38 C3N-02940 PDA miRNA-Seq tumor CPT0208550011 ab5cec90-101d-4298-b3a9-b9b262166e74_mirnaseq_gdc_realn.bam 243116604 BAM harmonized CPTAC3 4934fc92-aaf2-4f2e-8040-0b258029e7b4 659e486ae9ab8aab77ba297e6ad68cf1 {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.RNA-Seq.chimeric.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.chimeric.gdc_realn.bam 32706474 BAM chimeric harmonized CPTAC3 bd5cab3d-6f15-4763-bc09-8d8aca111f4c 4e74363ca84ea662f7e1cbff98c445be {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.RNA-Seq.genomic.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.genomic.gdc_realn.bam 8921882831 BAM genomic harmonized CPTAC3 0b787e14-e52c-41da-bb85-b82ff4e326c1 134d9ca3c27b34f6bfd49a9524b810e1 {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.RNA-Seq.S1_L001_R1.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R1_001.fastq.gz 4151583531 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 12195ec0-93e5-4954-b0b7-d370a3bb987c f518659fb01684adc09910f33a830dc0 {"aliquot_tag": "ALQ_f3ef2638", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.RNA-Seq.S1_L001_R2.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R2_001.fastq.gz 4556358988 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 64eb7ddd-348c-47f6-ad53-e7c62b014ee5 588b1a5745dfb40db8c9ba8bb22f4f67 {"aliquot_tag": "ALQ_f3ef2638", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.RNA-Seq.transcriptome.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.transcriptome.gdc_realn.bam 12395387771 BAM transcriptome harmonized CPTAC3 a094f9e9-1ceb-49c0-b780-de87fc1204a3 c1dab14b4c1b6e0703ec94d029aba75e {"aliquot_tag": "ALQ_f3ef2638", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.WGS.N C3N-02940 PDA WGS blood_normal CPT0208610002 CPT0208610002.WholeGenome.RP-1303.bam 84745515077 BAM submitted_aligned CPTAC3 500425cd-9ad0-4658-a53c-dcc7bb8b8409 c71cc27266cb39643aec1155b84c617b {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02940.WGS.N.hg38 C3N-02940 PDA WGS blood_normal CPT0208610002 44b36cfd-aba7-45da-a49a-14d4223dd59c_wgs_gdc_realn.bam 122231007671 BAM harmonized CPTAC3 45b0a730-f9e2-48d5-9f4b-29839c51a300 0541b1489ca6272cee85c84a1c53a8e6 {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02940.WGS.T C3N-02940 PDA WGS tumor CPT0208550008 CPT0208550008.WholeGenome.RP-1303.bam 131319665980 BAM submitted_aligned CPTAC3 09fe96ea-5f2a-4df6-adcd-775c54ae3cc7 ef2c89e7577e8f161603ba34ef269c92 {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.WGS.T.hg38 C3N-02940 PDA WGS tumor CPT0208550008 cbcf3892-c1ff-4758-961a-09ae3748493e_wgs_gdc_realn.bam 191650914854 BAM harmonized CPTAC3 ab885886-c339-4bad-b00e-598092afd5f7 a5f056737f33e33c2e3a2486b9181f6e {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.WXS.N C3N-02940 PDA WXS blood_normal CPT0208610002 CPT0208610002.WholeExome.RP-1303.bam 26847125911 BAM submitted_aligned CPTAC3 75956709-2867-4bc7-8722-b359ab77a72f 66a7b0b913d566bbbdbef5bd2b590c81 {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02940.WXS.N.hg38 C3N-02940 PDA WXS blood_normal CPT0208610002 44b36cfd-aba7-45da-a49a-14d4223dd59c_wxs_gdc_realn.bam 37107979909 BAM harmonized CPTAC3 a888a917-2ee1-4427-a20f-3420fa6ef756 5328ae15269a6dd2e7c65128ea60674d {"aliquot_tag": "ALQ_e992ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02940.WXS.T C3N-02940 PDA WXS tumor CPT0208550008 CPT0208550008.WholeExome.RP-1303.bam 45894420517 BAM submitted_aligned CPTAC3 c56cc3ff-e08e-42a9-adc3-b9aac4a6c0c3 450f0e879e9efdefe6843fd8e203f2bf {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02940.WXS.T.hg38 C3N-02940 PDA WXS tumor CPT0208550008 cbcf3892-c1ff-4758-961a-09ae3748493e_wxs_gdc_realn.bam 63808639267 BAM harmonized CPTAC3 8f37b2fd-49c1-434c-b816-78eb8b5a0df1 7a792f6610d3fc8fbafe222e287a450a {"aliquot_tag": "ALQ_9328afdd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.MethArray.Green.A C3N-02944 PDA Methylation_Array tissue_normal CPT0208710007 203561450084_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e957685e-5a25-44a4-b1d5-cd556cc7f517 8a9fdce637cd91343e68f04b9ee4c34f {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02944.MethArray.Green.T C3N-02944 PDA Methylation_Array tumor CPT0208690013 203561620008_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 12ecc1ea-a74f-4e7e-90a2-06347d475ebd 1d317aa09854db36c7579032d455e901 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.MethArray.Red.A C3N-02944 PDA Methylation_Array tissue_normal CPT0208710007 203561450084_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 945b3794-144f-4695-ac5c-2eb689e40fa7 1898f2993f343d1a8011955c5a5f4fcb {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02944.MethArray.Red.T C3N-02944 PDA Methylation_Array tumor CPT0208690013 203561620008_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 6a544504-3d0f-4316-805b-00a9694fa5d5 5cc199d6f283d6d3ee4a8c6d1a68ad73 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.miRNA-Seq.S14_L003_R1.T C3N-02944 PDA miRNA-Seq tumor CPT0208690010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAACTA_S14_L003_R1_001.unaln.bam 272027155 BAM S14_L003_R1 submitted_unaligned CPTAC3 ab6865fe-00b0-4589-b19b-9afada7ce28f 8a507e94bff060eb71d8ea2276dd485c {"aliquot_tag": "ALQ_c78c8901", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.miRNA-Seq.T.hg38 C3N-02944 PDA miRNA-Seq tumor CPT0208690010 98aa57dc-0f8f-4ce8-97db-bccef77dad07_mirnaseq_gdc_realn.bam 309680936 BAM harmonized CPTAC3 0afc362c-0c67-4c09-8ea3-9919101c5b6e da60daf2f5985027a194f6d129089db7 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.RNA-Seq.chimeric.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.chimeric.gdc_realn.bam 39273050 BAM chimeric harmonized CPTAC3 3a044b64-a185-45a8-b63c-2d88ade2e02f df66ff7a715420988fdda90bbfe26c91 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.RNA-Seq.genomic.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.genomic.gdc_realn.bam 7926634596 BAM genomic harmonized CPTAC3 8bc97bd1-69e9-4fc1-9d52-c1810ec51ef9 c8f9edaf39118db0b2f322ad3f9beba4 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.RNA-Seq.S22_L007_R1.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 3715954933 FASTQ S22_L007_R1 submitted_unaligned CPTAC3 a16118f0-9917-462e-9f2b-e0dccad0e451 0cda7e80bd51d38aae619f812743cb97 {"aliquot_tag": "ALQ_c78c8901", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.RNA-Seq.S22_L007_R2.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4190689530 FASTQ S22_L007_R2 submitted_unaligned CPTAC3 3742f936-63b0-4d14-a370-6a0f99de9ec3 e25afb246a4bb6855a2d01e25df92513 {"aliquot_tag": "ALQ_c78c8901", "sample": "S22", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.RNA-Seq.transcriptome.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.transcriptome.gdc_realn.bam 10589680598 BAM transcriptome harmonized CPTAC3 572b6318-0628-40c8-a54e-5b034138ba24 9f8b808926f8f2588960de8ee3864ec5 {"aliquot_tag": "ALQ_c78c8901", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.WGS.N C3N-02944 PDA WGS blood_normal CPT0208750002 CPT0208750002.WholeGenome.RP-1303.bam 73333015827 BAM submitted_aligned CPTAC3 06aa9719-fb58-48e3-ac5b-f2940b060118 34550eadc3a0bb8a8c13994306f2a450 {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02944.WGS.N.hg38 C3N-02944 PDA WGS blood_normal CPT0208750002 0b0faaf9-f88c-412a-a9b9-6b138aabe624_wgs_gdc_realn.bam 105736994637 BAM harmonized CPTAC3 58123efd-28db-4505-8149-7c5a150f5b3d c8f236796adc671f1fb42a21307e5fab {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02944.WGS.T C3N-02944 PDA WGS tumor CPT0208690013 CPT0208690013.WholeGenome.RP-1303.PDO-18613.bam 142807974513 BAM submitted_aligned CPTAC3 b46dc866-e674-460f-9ca9-b117c2c51c69 c7d2265d5de116614af81722a5f1e4f6 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.WGS.T.hg38 C3N-02944 PDA WGS tumor CPT0208690013 d5cd76a3-c43b-448b-8be6-b3456df955f1_wgs_gdc_realn.bam 210051100700 BAM harmonized CPTAC3 6f2cf9e8-d24b-4ca2-92e7-2803c2003519 042a5fd2b450bbe7ad5ffa1c582f284d {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.WXS.A C3N-02944 PDA WXS tissue_normal CPT0208710007 CPT0208710007.WholeExome.RP-1303.bam 29015644062 BAM submitted_aligned CPTAC3 b27f5f6c-de98-4d2e-9c35-f0e5922cd3ce 559fbb1b2ff3a20556ac28640ab40937 {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02944.WXS.A.hg38 C3N-02944 PDA WXS tissue_normal CPT0208710007 860aa962-909c-4eb9-a87c-cb6dde6a20b9_wxs_gdc_realn.bam 40465735151 BAM harmonized CPTAC3 e69fcdc7-a52c-4eee-9966-7dd82ac76ffe 913fcc17c66f69563d69fbf6d974d327 {"aliquot_tag": "ALQ_bbdfb587", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02944.WXS.N C3N-02944 PDA WXS blood_normal CPT0208750002 CPT0208750002.WholeExome.RP-1303.bam 27574463278 BAM submitted_aligned CPTAC3 40ca2758-f5fa-4fa0-8e2e-330021951af9 c55432e99a4f0f82e91dfae0ec5c953b {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02944.WXS.N.hg38 C3N-02944 PDA WXS blood_normal CPT0208750002 0b0faaf9-f88c-412a-a9b9-6b138aabe624_wxs_gdc_realn.bam 38148185533 BAM harmonized CPTAC3 174062e6-33ad-4b74-92d0-22518321013c 8d72fc888da7bf5e7aa455479e4dcdd9 {"aliquot_tag": "ALQ_3e35e7c8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02944.WXS.T C3N-02944 PDA WXS tumor CPT0208690013 CPT0208690013.WholeExome.RP-1303.bam 21563334513 BAM submitted_aligned CPTAC3 e4997d89-86d5-4b81-9c53-331dfabe7c45 3160d35e75bd90ad481824d5433a0e44 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02944.WXS.T.hg38 C3N-02944 PDA WXS tumor CPT0208690013 d5cd76a3-c43b-448b-8be6-b3456df955f1_wxs_gdc_realn.bam 28872868398 BAM harmonized CPTAC3 ea76dae8-7624-4b24-bc45-22eb37e6b7bd ccd53e2ff649c8c3ca46695293246511 {"aliquot_tag": "ALQ_5e85d8bb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.MethArray.Green.A C3N-02945 CCRCC Methylation_Array tissue_normal CPT0158980006 204930630081_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 66bf238e-cdfb-431a-9d85-0ac027525fdf a6096aabba05e532550781822363a79d {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.MethArray.Green.T C3N-02945 CCRCC Methylation_Array tumor CPT0158950009 203219670066_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 05b55a47-6471-48b9-a42a-e8ff5d46b5ff 6e113dc714240d440cd5d0c2726c63d8 {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.MethArray.Red.A C3N-02945 CCRCC Methylation_Array tissue_normal CPT0158980006 204930630081_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 323e77a0-65b0-4554-99bd-6ecf9db44532 83860b0d665022d10b542d72e5e8ac18 {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.MethArray.Red.T C3N-02945 CCRCC Methylation_Array tumor CPT0158950009 203219670066_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 eef52275-3c50-4a10-b221-f4ad83c41397 84b9717c3dab676be2cbde413660eb0a {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.miRNA-Seq.A.hg38 C3N-02945 CCRCC miRNA-Seq tissue_normal CPT0158980009 a3839eb3-ad79-41ca-9a53-e34937b2f12f_mirnaseq_gdc_realn.bam 227240011 BAM harmonized CPTAC3 06321102-e38e-449e-85da-2fc7f246a397 a8f9c70bea1de77df1d7265ea999ab8e {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.miRNA-Seq.S1_L002_R1.A C3N-02945 CCRCC miRNA-Seq tissue_normal CPT0158980009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L002_R1_001.unaln.bam 209885005 BAM S1_L002_R1 submitted_unaligned CPTAC3 974eea39-f759-4b7a-80d7-5d329d5884d6 9e003492f13ec1d9c30e80bcea9e9c33 {"aliquot_tag": "ALQ_1a10a920", "sample": "S1", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.miRNA-Seq.S43_L005_R1.T C3N-02945 CCRCC miRNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0176_AHYGLVBBXX_TACAGC_S43_L005_R1_001.unaln.bam 261991195 BAM S43_L005_R1 submitted_unaligned CPTAC3 4c58ae99-f7ce-4f25-a3e8-4ba6d9bb027e f82b0322080dc2db98a98324c2a14bdf {"aliquot_tag": "ALQ_723f7000", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.miRNA-Seq.T.hg38 C3N-02945 CCRCC miRNA-Seq tumor CPT0158950006 0b46c18b-18a8-4aed-9661-a18ca9111d15_mirnaseq_gdc_realn.bam 284176114 BAM harmonized CPTAC3 3c543e8b-2240-4c96-a32b-f4f7196fcd95 6211d5914585ae4fc7d82edf2aa998a6 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.RNA-Seq.chimeric.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.chimeric.gdc_realn.bam 128323409 BAM chimeric harmonized CPTAC3 a805319c-dbcd-4f68-afee-1d37684bd22e 73b935eb17a864fa531d493c5a393f9b {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.RNA-Seq.chimeric.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.chimeric.gdc_realn.bam 55191554 BAM chimeric harmonized CPTAC3 7c30b84d-41b3-4b7e-bc5d-bcffdfd4fe57 ea16d13a6aabec98d20f1aa5bcd2a440 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.RNA-Seq.genomic.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.genomic.gdc_realn.bam 8765246942 BAM genomic harmonized CPTAC3 97e22ccc-ce51-4712-9ce3-3968c9663efc f5b66f08d35f233d24e1fb016a3629f6 {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.RNA-Seq.genomic.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.genomic.gdc_realn.bam 8442196812 BAM genomic harmonized CPTAC3 9c841274-2030-46c0-b1eb-d4522a5af289 3ca33fd460fb48f9ef9a6818be9b3bf0 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.RNA-Seq.S20_L007_R1.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R1_001.fastq.gz 3711664566 FASTQ S20_L007_R1 submitted_unaligned CPTAC3 09ed5081-1674-47ea-9135-f4de72596214 5fed27f54c9e912a132955f2f9ef1b45 {"aliquot_tag": "ALQ_1a10a920", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.RNA-Seq.S20_L007_R2.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R2_001.fastq.gz 4051310218 FASTQ S20_L007_R2 submitted_unaligned CPTAC3 7db8b6f0-4f4a-483d-a7bb-dd3317582474 1460b4e894a23d2d1d8c7b6639211ca6 {"aliquot_tag": "ALQ_1a10a920", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.RNA-Seq.S21_L006_R1.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4114464795 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 2232e9a7-eec5-459e-bacb-7de492449159 8b0664029ffe1db736c02d866a1be1d2 {"aliquot_tag": "ALQ_723f7000", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.RNA-Seq.S21_L006_R2.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4198120178 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 288b60bc-4549-4319-9761-b001886cc5b6 1468837e70d090c633721b4320a832fe {"aliquot_tag": "ALQ_723f7000", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.RNA-Seq.transcriptome.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.transcriptome.gdc_realn.bam 9314084437 BAM transcriptome harmonized CPTAC3 e2c3fa3a-d74e-43a2-b06f-57c9d90d06c4 93303725e4e1f2d171b8179be4100d00 {"aliquot_tag": "ALQ_1a10a920", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.RNA-Seq.transcriptome.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.transcriptome.gdc_realn.bam 11157997564 BAM transcriptome harmonized CPTAC3 45a82623-f3f2-4df5-a654-ead5470c7d37 dddae7d7bd84bddaabced9d76cb1c826 {"aliquot_tag": "ALQ_723f7000", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.WGS.N C3N-02945 CCRCC WGS blood_normal CPT0159450002 CPT0159450002.WholeGenome.RP-1303.bam 55832259556 BAM submitted_aligned CPTAC3 8ac4070d-59e0-4073-8220-132a57aaacc5 fa4dceef400bb9e007d7de5429e2b980 {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02945.WGS.N.hg38 C3N-02945 CCRCC WGS blood_normal CPT0159450002 9f78159f-3ac7-4fb0-8386-48b277ad7a62_wgs_gdc_realn.bam 80830314589 BAM harmonized CPTAC3 55c446e5-fec9-453d-99ba-c651d3a4d102 314a51ce359970c6afce41e7d61d7678 {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02945.WGS.T C3N-02945 CCRCC WGS tumor CPT0158950009 CPT0158950009.WholeGenome.RP-1303.bam 132500056449 BAM submitted_aligned CPTAC3 6b1a804d-67e1-4308-8587-baf6a85a61bb a8697be813c988804753681a89d91f3b {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.WGS.T.hg38 C3N-02945 CCRCC WGS tumor CPT0158950009 10107eda-25f7-413b-94af-f88b2c79de18_wgs_gdc_realn.bam 186689750465 BAM harmonized CPTAC3 965fbb35-092b-48f8-a4a8-2ad896af595f 4f33418303844d46bf82fdd2a18aca3f {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.WXS.A C3N-02945 CCRCC WXS tissue_normal CPT0158980006 CPT0158980006.WholeExome.RP-1303.bam 24541132244 BAM submitted_aligned CPTAC3 58310068-0712-4817-8892-e1eda642e825 48964a799caf44827cc2982c74bf2741 {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.WXS.A.hg38 C3N-02945 CCRCC WXS tissue_normal CPT0158980006 f0bf7c26-d87c-4bc7-846b-1da1572c10dc_wxs_gdc_realn.bam 33791788079 BAM harmonized CPTAC3 b6afdbc3-c35f-45da-9417-664731ca1875 fe3d3bf05e6da8e093ae7209c005bb20 {"aliquot_tag": "ALQ_8aafb4b1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02945.WXS.N C3N-02945 CCRCC WXS blood_normal CPT0159450002 CPT0159450002.WholeExome.RP-1303.bam 21871951240 BAM submitted_aligned CPTAC3 0f058ee2-7760-46e2-830f-b91c1e520d9f 281078ba3e73eba0a600647d07d0376a {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02945.WXS.N.hg38 C3N-02945 CCRCC WXS blood_normal CPT0159450002 9f78159f-3ac7-4fb0-8386-48b277ad7a62_wxs_gdc_realn.bam 30568171035 BAM harmonized CPTAC3 1851e9f3-d9c1-4593-a5e6-8b59cf6f1c19 b85368e9e55b94251f93640276110f03 {"aliquot_tag": "ALQ_6fbbac73", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02945.WXS.T C3N-02945 CCRCC WXS tumor CPT0158950009 CPT0158950009.WholeExome.RP-1303.bam 21917122975 BAM submitted_aligned CPTAC3 ce791ae1-a103-4421-901e-b957c6db3a9a fa8e7433871e32fa64474d994c6ebdee {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02945.WXS.T.hg38 C3N-02945 CCRCC WXS tumor CPT0158950009 10107eda-25f7-413b-94af-f88b2c79de18_wxs_gdc_realn.bam 29953488572 BAM harmonized CPTAC3 5f7ef2cb-3738-44fc-a1a3-f8ae9ae2c757 318abde0cc6dd9ca5325faccb9f56cfc {"aliquot_tag": "ALQ_e2806d91", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02947.MethArray.Green.T C3N-02947 UCEC Methylation_Array tumor CPT0158520011 203561450018_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 41c77ca8-0661-4ab0-98fc-38cd16613351 5077871ee80920a0bc1cb9d9e73c8bba {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.MethArray.Red.T C3N-02947 UCEC Methylation_Array tumor CPT0158520011 203561450018_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 78626fe4-5ebb-436b-b1c4-3fb9abb9fc9d 2720a8650970bae3c007b856f5aa4c39 {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.miRNA-Seq.S16_L003_R1.T C3N-02947 UCEC miRNA-Seq tumor CPT0158520014 190508_UNC31-K00269_0215_BH7FYKBBXY_CCGTCC_S16_L003_R1_001.unaln.bam 191975960 BAM S16_L003_R1 submitted_unaligned CPTAC3 cdb5ba2d-55f8-4d52-a3e4-6578e7a5a682 5b3a7fc1347aa30921871fe9ce465217 {"aliquot_tag": "ALQ_40c83c06", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.miRNA-Seq.T.hg38 C3N-02947 UCEC miRNA-Seq tumor CPT0158520014 ca87a91d-325c-4a89-b284-27b977337fbc_mirnaseq_gdc_realn.bam 216797226 BAM harmonized CPTAC3 2e1d0e96-2465-48b3-8bdb-f51b8fb5da81 c804bf5e7e6052b8a2d3c24983a2bf0f {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.chimeric.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.chimeric.gdc_realn.bam 34785528 BAM chimeric harmonized CPTAC3 2babc294-03fd-4ca2-9109-2f66f637c24e 7478278162add236b66f226b1101357a {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.chimeric.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.chimeric.gdc_realn.bam 179911515 BAM chimeric harmonized CPTAC3 1dd35833-9fd1-4f7a-b263-dcd7e1d1d4c3 3966cf27a0021c5469333f846cd33306 {"aliquot_tag": "ALQ_e15976b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.genomic.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.genomic.gdc_realn.bam 8705116109 BAM genomic harmonized CPTAC3 dd5f0fa8-db2f-460e-b3b2-cf8dbbb493ba af1e90b16c734c3cdb673b79f3229b59 {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.genomic.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.genomic.gdc_realn.bam 8845754724 BAM genomic harmonized CPTAC3 e029bf40-4884-4c21-ad59-1ee267ca0a0b f8ef3fc560206a44ba9995422c0a1a98 {"aliquot_tag": "ALQ_e15976b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.S28_L007_R1.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R1_001.fastq.gz 3929759241 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 d7344ab8-5fc2-4c8c-9d05-d8282f22d3f7 2f353e0faf93274cc1260bf1eadbf704 {"aliquot_tag": "ALQ_40c83c06", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.S28_L007_R2.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R2_001.fastq.gz 4540201390 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 6d5aed0d-d8ed-4b7c-8dfe-df4805167f6d 48b3fcadc8abeb67baaf192ce6dd3581 {"aliquot_tag": "ALQ_40c83c06", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.S46_R1.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R1_001.fastq.gz 6142656648 FASTQ S46_R1 submitted_unaligned CPTAC3 b6ae4b9c-1dbf-4a5b-a998-b75a2722b338 595fe13215317ac2804879da6ac375d5 {"aliquot_tag": "ALQ_e15976b8", "sample": "S46", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.S46_R2.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R2_001.fastq.gz 6391118314 FASTQ S46_R2 submitted_unaligned CPTAC3 def1649a-845a-4a01-90a4-ef9d55653ab2 1e6d500173112ea6ab05eee95cc4a8f2 {"aliquot_tag": "ALQ_e15976b8", "sample": "S46", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.transcriptome.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.transcriptome.gdc_realn.bam 11554955482 BAM transcriptome harmonized CPTAC3 b9f8f644-bb79-4480-b724-8bdda804ebe4 9957b28a7d0130024b3576858bc81458 {"aliquot_tag": "ALQ_40c83c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.RNA-Seq.transcriptome.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.transcriptome.gdc_realn.bam 7062899798 BAM transcriptome harmonized CPTAC3 d33c4f77-8f04-4e7e-8cf2-12e615f62610 01a60f708c6fa8d010609bbe9a78bb99 {"aliquot_tag": "ALQ_e15976b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.WGS.N C3N-02947 UCEC WGS blood_normal CPT0159460002 CPT0159460002.WholeGenome.RP-1303.bam 66925906042 BAM submitted_aligned CPTAC3 466f6cf0-f37b-4601-a9f4-309b3c68a1f1 5d81f5666d7ba04daaabb226aa2c19db {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02947.WGS.N.hg38 C3N-02947 UCEC WGS blood_normal CPT0159460002 e084a54c-56f3-4760-b98f-16f0b6e7f209_wgs_gdc_realn.bam 97428746518 BAM harmonized CPTAC3 2bcabd4e-2788-4643-9ca4-2250d1d01756 3b922e0fd033048187a72468c1efe9f6 {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02947.WGS.T C3N-02947 UCEC WGS tumor CPT0158520011 CPT0158520011.WholeGenome.RP-1303.bam 54502609402 BAM submitted_aligned CPTAC3 74578276-4c6e-45ec-8724-c8981d7daec2 9c8e0271aa9ebeea6df90459663b8ad6 {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.WGS.T.hg38 C3N-02947 UCEC WGS tumor CPT0158520011 917f51a7-7b1e-45aa-9866-b67c15b7d4f9_wgs_gdc_realn.bam 78760121044 BAM harmonized CPTAC3 252e26bf-c072-4802-9a10-c89e2f0d88c4 6884d1c3e57c8989b30c1a9dd22a4beb {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.WXS.N C3N-02947 UCEC WXS blood_normal CPT0159460002 CPT0159460002.WholeExome.RP-1303.bam 27789945096 BAM submitted_aligned CPTAC3 c461758a-6b4d-429d-af7e-90ecfd1997b2 e48ea648cdc7d3bcef89854eac402ca1 {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02947.WXS.N.hg38 C3N-02947 UCEC WXS blood_normal CPT0159460002 e084a54c-56f3-4760-b98f-16f0b6e7f209_wxs_gdc_realn.bam 37801084527 BAM harmonized CPTAC3 d386ddd9-c1bb-4c4b-b2f1-2c1b7213070c e15b27e8c1ac60e17c550bf5e8fa44bd {"aliquot_tag": "ALQ_281bd6a3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02947.WXS.T C3N-02947 UCEC WXS tumor CPT0158520011 CPT0158520011.WholeExome.RP-1303.bam 19552895922 BAM submitted_aligned CPTAC3 b34338a4-8213-4172-ba1b-8811b5ba5f7a 2370d7fb4139139d8c7cc2ba21b5be46 {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02947.WXS.T.hg38 C3N-02947 UCEC WXS tumor CPT0158520011 917f51a7-7b1e-45aa-9866-b67c15b7d4f9_wxs_gdc_realn.bam 27954844703 BAM harmonized CPTAC3 ce628685-3f7c-4c59-b124-1fe68e685915 69a7d97731c001d7786812412002a6ca {"aliquot_tag": "ALQ_30a2c889", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02948.MethArray.Green.A C3N-02948 LUAD Methylation_Array tissue_normal CPT0185650006 203561450099_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6be9232c-c363-4019-9976-6331a970dab0 ff7c576f5f6e5eab5608428f8d61a997 {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.MethArray.Green.T C3N-02948 LUAD Methylation_Array tumor CPT0185620007 203273630261_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 bf6ebf85-a4d3-4f41-8af7-121d56910829 9857846be201c5d9c6b634a0957feb6c {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.MethArray.Red.A C3N-02948 LUAD Methylation_Array tissue_normal CPT0185650006 203561450099_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 e53213a2-34fc-4f68-816c-f77cb941677b 1e56aa1d8326307de7195b35084b9082 {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.MethArray.Red.T C3N-02948 LUAD Methylation_Array tumor CPT0185620007 203273630261_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3a18ec0d-6880-4ea3-8ef5-19559cd8f59d 09c2d1ace5a96103dd8c0661990f51e7 {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.miRNA-Seq.A.hg38 C3N-02948 LUAD miRNA-Seq tissue_normal CPT0185650009 0f175fc8-3935-47ee-a6e4-7fadf7ea340f_mirnaseq_gdc_realn.bam 258577939 BAM harmonized CPTAC3 93dc8575-e0b5-4964-82af-0ad1de0e24f2 ba3036494fea25f78e245b2de944e646 {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.miRNA-Seq.S22_L004_R1.T C3N-02948 LUAD miRNA-Seq tumor CPT0185620010 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGAGC_S22_L004_R1_001.unaln.bam 189178718 BAM S22_L004_R1 submitted_unaligned CPTAC3 9dd09d20-95fe-4ff0-82aa-3415add1ff5c 7450d9b1c6195f93e86790d283cb311b {"aliquot_tag": "ALQ_3be3fea0", "sample": "S22", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.miRNA-Seq.S37_L007_R1.A C3N-02948 LUAD miRNA-Seq tissue_normal CPT0185650009 190712_UNC32-K00270_0192_BH7HL3BBXY_AGTTCC_S37_L007_R1_001.unaln.bam 226649929 BAM S37_L007_R1 submitted_unaligned CPTAC3 829fd6d6-a4a5-41c0-b96a-0673cbeb8bfc 1564833ed387655b33ed8732ceadbc8f {"aliquot_tag": "ALQ_e904ab55", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.miRNA-Seq.T.hg38 C3N-02948 LUAD miRNA-Seq tumor CPT0185620010 012f3661-775c-4a28-905e-96ce3f3ac64c_mirnaseq_gdc_realn.bam 207341302 BAM harmonized CPTAC3 3b131dba-2aa1-482e-a179-e9a6b16f9d37 71c1d517c8577c26c05dab95f8fe732f {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.RNA-Seq.chimeric.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.chimeric.gdc_realn.bam 39129540 BAM chimeric harmonized CPTAC3 85b11dfb-bb4f-42a6-b4af-9c8b62f57293 98d4bde868e841bbfba05c97bfb57419 {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.RNA-Seq.chimeric.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.chimeric.gdc_realn.bam 28269583 BAM chimeric harmonized CPTAC3 edeba805-334a-447a-84b8-b4509814fbd7 ff4914d2a31b5af99d33c5745807e004 {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.RNA-Seq.genomic.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.genomic.gdc_realn.bam 8086442759 BAM genomic harmonized CPTAC3 cd331c65-65af-42aa-8f45-974b9dfb255b b9c4cf76f07f14634a0fc31e861f759a {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.RNA-Seq.genomic.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.genomic.gdc_realn.bam 12820373986 BAM genomic harmonized CPTAC3 f4e913fb-010a-4c45-9ce3-5501c5e9ba62 c640623623b2c8c885f42f39d7ab3505 {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.RNA-Seq.S17_L005_R1.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R1_001.fastq.gz 3551294006 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 b4c4c9e6-b65a-49a2-abb1-4d5a9ef3b75b aaf9b6579fc9842609184ba9f45c8328 {"aliquot_tag": "ALQ_e904ab55", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.RNA-Seq.S17_L005_R2.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R2_001.fastq.gz 3659272092 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 87028c31-f91a-441a-afe7-076d22314769 8287659f04cda706fafcafc66a4c2dc0 {"aliquot_tag": "ALQ_e904ab55", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.RNA-Seq.S30_L008_R1.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R1_001.fastq.gz 3708317803 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 c7c365e2-62a5-4ecb-9082-98ba487225c8 5888717a88a647878fb532f7ea585f82 {"aliquot_tag": "ALQ_3be3fea0", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.RNA-Seq.S30_L008_R2.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R2_001.fastq.gz 4185413458 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 25ab23a6-374d-4668-ae34-3f02353df9fd 7581a1d7c5475d57dbc6bb0513ea0ce6 {"aliquot_tag": "ALQ_3be3fea0", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.RNA-Seq.transcriptome.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.transcriptome.gdc_realn.bam 8337560232 BAM transcriptome harmonized CPTAC3 3fd1fe80-665c-4e39-9d5d-574be67e2894 eaa01ff88d9e799fe7d8416db8075760 {"aliquot_tag": "ALQ_e904ab55", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.RNA-Seq.transcriptome.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.transcriptome.gdc_realn.bam 9925918868 BAM transcriptome harmonized CPTAC3 c157653f-0309-4032-983a-5a9adc56dd1f 853127664964c7e47468c879f83af3fa {"aliquot_tag": "ALQ_3be3fea0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.WGS.N C3N-02948 LUAD WGS blood_normal CPT0187250002 CPT0187250002.WholeGenome.RP-1303.bam 77602708506 BAM submitted_aligned CPTAC3 d8f328c8-d384-4911-ad97-b27117c08934 10cc204d379c815c9dc2eb06d498aa2f {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02948.WGS.N.hg38 C3N-02948 LUAD WGS blood_normal CPT0187250002 29d5cb91-d838-44d1-a510-7b9838823be1_wgs_gdc_realn.bam 114951738470 BAM harmonized CPTAC3 bdbf85a0-5ba8-4d35-96df-274af98e9288 d4a9b744a394c7ed7617b594f4411e1e {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02948.WGS.T C3N-02948 LUAD WGS tumor CPT0185620007 CPT0185620007.WholeGenome.RP-1303.bam 72818149883 BAM submitted_aligned CPTAC3 62407993-cd49-4847-b947-63b19d4723ed c67691b6f138fb1918ddb3d35818690e {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.WGS.T.hg38 C3N-02948 LUAD WGS tumor CPT0185620007 4f5e43bf-ba50-4cb8-bc28-e1d7574cb0a0_wgs_gdc_realn.bam 106327473982 BAM harmonized CPTAC3 f6bd1cac-a4b1-4ab5-82e9-012ed5ac8610 e8802b91a0507fdaccccdd4333dbcfcb {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.WXS.A C3N-02948 LUAD WXS tissue_normal CPT0185650006 CPT0185650006.WholeExome.RP-1303.bam 21542906317 BAM submitted_aligned CPTAC3 c5667c5d-688e-4a5c-a85f-9fc70ae16e9b 54ed74e8dc1b32830d25f1b6d394814c {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.WXS.A.hg38 C3N-02948 LUAD WXS tissue_normal CPT0185650006 f178dc69-9def-4816-a759-c9ee959ea265_wxs_gdc_realn.bam 29707899118 BAM harmonized CPTAC3 39f1d507-21aa-4c30-9082-5962da48a1c6 449a13591996026fb2154d0b132aa362 {"aliquot_tag": "ALQ_79bbb6c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02948.WXS.N C3N-02948 LUAD WXS blood_normal CPT0187250002 CPT0187250002.WholeExome.RP-1303.bam 27390057352 BAM submitted_aligned CPTAC3 220bcec8-2e84-49f6-92aa-661646b915a4 11efa14083c6a6d9986f36b0baeac470 {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02948.WXS.N.hg38 C3N-02948 LUAD WXS blood_normal CPT0187250002 29d5cb91-d838-44d1-a510-7b9838823be1_wxs_gdc_realn.bam 37785859118 BAM harmonized CPTAC3 1715b6d5-afb1-4758-858b-36288eb4f8cb e2b32f96a8df9a0c7bb13d519cf5b28a {"aliquot_tag": "ALQ_72d821e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02948.WXS.T C3N-02948 LUAD WXS tumor CPT0185620007 CPT0185620007.WholeExome.RP-1303.bam 21211060005 BAM submitted_aligned CPTAC3 4a42e5b9-fa25-467d-9fe6-c678753cae52 75c23f1fe5774dab4114566933da44ac {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02948.WXS.T.hg38 C3N-02948 LUAD WXS tumor CPT0185620007 4f5e43bf-ba50-4cb8-bc28-e1d7574cb0a0_wxs_gdc_realn.bam 29349818366 BAM harmonized CPTAC3 5d390c6c-0060-47a6-bab7-077f84e8295e c8feb5c202323b752c1a76818412a719 {"aliquot_tag": "ALQ_bc9c5a42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.MethArray.Green.A C3N-02950 LUAD Methylation_Array tissue_normal CPT0240920012 203561450100_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 cae14fc5-75d9-4600-a9cb-e0e6a8998d4c c011ad0e66de62f89915a8d05a0b9cfe {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.MethArray.Green.T C3N-02950 LUAD Methylation_Array tumor CPT0240910006 203561450102_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b10e9dfc-1db3-4de0-bd95-e66e92912a3d c813891241b6b2967c9208360bcb4aff {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.MethArray.Red.A C3N-02950 LUAD Methylation_Array tissue_normal CPT0240920012 203561450100_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 a9bce004-c87f-46e3-a139-6aea32d0530d 9b5c2301a8f4cb095f253d4e524d5641 {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.MethArray.Red.T C3N-02950 LUAD Methylation_Array tumor CPT0240910006 203561450102_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 598cb0ae-0ab3-4e3b-80eb-d48738ddfe25 ae2907d4e062cec8782b06e63dfc1689 {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.miRNA-Seq.S39_L004_R1.T C3N-02950 LUAD miRNA-Seq tumor CPT0240910009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGAAG_S39_L004_R1_001.unaln.bam 204816629 BAM S39_L004_R1 submitted_unaligned CPTAC3 9625d2b6-b8a6-447d-be9f-ce47d617ed46 39e7a0d3863b3c8c57d9fed1b67a5a00 {"aliquot_tag": "ALQ_d1c8b96d", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.miRNA-Seq.T.hg38 C3N-02950 LUAD miRNA-Seq tumor CPT0240910009 d98fa8a5-ce62-4083-b405-8d80d3ca147a_mirnaseq_gdc_realn.bam 224788595 BAM harmonized CPTAC3 c2a58361-0ec2-483e-b7aa-36146c797f2a 1ca92f3662eac999ac5a3daaf1490526 {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.RNA-Seq.chimeric.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.chimeric.gdc_realn.bam 32207451 BAM chimeric harmonized CPTAC3 d8a53cf6-5837-4595-b457-fda5fe74ea58 85c10b3a3ecc3a4f9c278a833de83e28 {"aliquot_tag": "ALQ_f6af4a58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.RNA-Seq.chimeric.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.chimeric.gdc_realn.bam 26242453 BAM chimeric harmonized CPTAC3 b9d0c188-8e21-47df-a66a-2c32f8613764 a3f635cf96cec739789a95c8753ee384 {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.RNA-Seq.genomic.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.genomic.gdc_realn.bam 7147464534 BAM genomic harmonized CPTAC3 7e6e9287-b8af-432e-b929-a342489d8c28 0c441a81745a0bbbe6ed7b5ebd03e436 {"aliquot_tag": "ALQ_f6af4a58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.RNA-Seq.genomic.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.genomic.gdc_realn.bam 9845052013 BAM genomic harmonized CPTAC3 c853fb94-c580-41af-b766-faed4837b3fb 5ac6e37601a4637acd474a51f7b0a5a2 {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.RNA-Seq.S11_L003_R1.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 3586732550 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 4120f0c1-aad8-4dcc-b07a-01587413a44b 0c1476c054b3154708b0bffac2719683 {"aliquot_tag": "ALQ_f6af4a58", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.RNA-Seq.S11_L003_R2.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 3869436944 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 c0f6a29e-6657-4040-9001-82372dfa1bd5 d0b96fd58e192525d3006585ebd52e17 {"aliquot_tag": "ALQ_f6af4a58", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.RNA-Seq.S29_L008_R1.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R1_001.fastq.gz 3589057668 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 cef32c06-5b93-44f0-9038-42d85d25cac8 bb127bc3b71101bf67ce2a744f44aea7 {"aliquot_tag": "ALQ_d1c8b96d", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.RNA-Seq.S29_L008_R2.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R2_001.fastq.gz 4024516872 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 595fc7b1-5409-46be-a102-5e430cf7d252 04d851e88aa7863b9f05e50a6ad012c7 {"aliquot_tag": "ALQ_d1c8b96d", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.RNA-Seq.transcriptome.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.transcriptome.gdc_realn.bam 8312548627 BAM transcriptome harmonized CPTAC3 703049b8-2c1b-42e1-a0f1-a4ae51fbf9fd 8533404d0eae790418385d2ef9b5ff8d {"aliquot_tag": "ALQ_f6af4a58", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.RNA-Seq.transcriptome.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.transcriptome.gdc_realn.bam 7539983771 BAM transcriptome harmonized CPTAC3 cb8a10e5-27cf-4c78-a43c-235d10345721 14b2a795f28a86eff4ae9b54a846f92a {"aliquot_tag": "ALQ_d1c8b96d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.WGS.N C3N-02950 LUAD WGS blood_normal CPT0241780002 CPT0241780002.WholeGenome.RP-1303.bam 56278523062 BAM submitted_aligned CPTAC3 5aeb8f3d-1b34-41e6-bf13-91c9124110a4 0f7321309efff3030fc0052442c44cd5 {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02950.WGS.N.hg38 C3N-02950 LUAD WGS blood_normal CPT0241780002 8db3824d-3953-4244-9a56-695278778c6a_wgs_gdc_realn.bam 82136358474 BAM harmonized CPTAC3 337f6981-3213-4d35-9d42-e180cc32d448 1b62fba8bd6f598d8b40e901be10fde9 {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02950.WGS.T C3N-02950 LUAD WGS tumor CPT0240910006 CPT0240910006.WholeGenome.RP-1303.bam 72303463868 BAM submitted_aligned CPTAC3 e9752a03-7230-4ef0-972d-1c377bcad282 beb1a2dabdb918d1a6686096e978213c {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.WGS.T.hg38 C3N-02950 LUAD WGS tumor CPT0240910006 27296cd5-a985-4e5f-bc2b-162370b82385_wgs_gdc_realn.bam 106231483332 BAM harmonized CPTAC3 09427d2a-8efa-4204-87c5-9c97900d7f65 644aa1c8610c2832dcfd4813425b298b {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.WXS.A C3N-02950 LUAD WXS tissue_normal CPT0240920012 CPT0240920012.WholeExome.RP-1303.bam 27547902880 BAM submitted_aligned CPTAC3 2fce90d4-bab1-4c31-b7cd-e3f1609b86d4 9526423bd7a76527ef8025d575307b8e {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.WXS.A.hg38 C3N-02950 LUAD WXS tissue_normal CPT0240920012 73d543dd-e982-4e59-b714-70b151d15084_wxs_gdc_realn.bam 37271939045 BAM harmonized CPTAC3 51e3f4ea-e84f-4234-8d29-12bc606ba4de 73b5e777b86274607f3959e749cd34aa {"aliquot_tag": "ALQ_18a12b74", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02950.WXS.N C3N-02950 LUAD WXS blood_normal CPT0241780002 CPT0241780002.WholeExome.RP-1303.bam 29298407947 BAM submitted_aligned CPTAC3 60de1d5d-da59-4035-90a4-133550abd754 d1fa2f0625a23b0ac71cec7f7c1c899d {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02950.WXS.N.hg38 C3N-02950 LUAD WXS blood_normal CPT0241780002 8db3824d-3953-4244-9a56-695278778c6a_wxs_gdc_realn.bam 40252124171 BAM harmonized CPTAC3 752e7d6c-d010-4603-86aa-f5934f2ee7d5 2ae06faa9c9363aad7886643f38e92d7 {"aliquot_tag": "ALQ_d7776850", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02950.WXS.T C3N-02950 LUAD WXS tumor CPT0240910006 CPT0240910006.WholeExome.RP-1303.bam 22941386633 BAM submitted_aligned CPTAC3 f47ca1ad-a7c3-4a7e-97f9-f8d157b05e43 3032bc8cf7b9d887e7695b2c8a31face {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02950.WXS.T.hg38 C3N-02950 LUAD WXS tumor CPT0240910006 27296cd5-a985-4e5f-bc2b-162370b82385_wxs_gdc_realn.bam 31738049468 BAM harmonized CPTAC3 c12cae72-7b22-4726-a1b0-500a3f4b8173 9de070f9d2c238847d312ff159c57d70 {"aliquot_tag": "ALQ_4177a4fc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.MethArray.Green.T C3N-02971 PDA Methylation_Array tumor CPT0185920007 203561450103_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7ac5ed9c-77ab-401d-bfe2-667d07392c83 f4d105336be15b304e4bb4f5866c95b3 {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.MethArray.Red.T C3N-02971 PDA Methylation_Array tumor CPT0185920007 203561450103_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 6dbc4cfe-f363-4215-84ee-9d4489ae7b55 ded2c024651cb60433fc3a4930d49182 {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.miRNA-Seq.S23_L006_R1.T C3N-02971 PDA miRNA-Seq tumor CPT0185920010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L006_R1_001.unaln.bam 217059740 BAM S23_L006_R1 submitted_unaligned CPTAC3 4540adf0-2dbc-479a-84a9-d6bee606b0f7 4c59831aaa4f5e0c38267b6866f5374b {"aliquot_tag": "ALQ_cab54c75", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.miRNA-Seq.T.hg38 C3N-02971 PDA miRNA-Seq tumor CPT0185920010 1712f055-afd7-4a31-bdce-6ea9b55c36a3_mirnaseq_gdc_realn.bam 242812683 BAM harmonized CPTAC3 d94e3bcb-f12d-4b67-b6fd-04765d5c0ef7 6d7c1345998811a2e7569a89195487cd {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.RNA-Seq.chimeric.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.chimeric.gdc_realn.bam 183418031 BAM chimeric harmonized CPTAC3 b7e0a69d-20b6-44f8-9455-53ff24d66e02 fda5770cc018a3e2583a733338c6ff7e {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.RNA-Seq.genomic.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.genomic.gdc_realn.bam 10627923723 BAM genomic harmonized CPTAC3 731788f7-224d-463e-9c98-dc39ebc5222e c848697374921a4a27e6bb2789d5f0d7 {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.RNA-Seq.S7_L002_R1.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R1_001.fastq.gz 4121970006 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 f8b3b37d-3f83-4bd1-be99-9f1d32051fd2 280aaf28980c838a861b74d7b371a4ee {"aliquot_tag": "ALQ_cab54c75", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.RNA-Seq.S7_L002_R2.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R2_001.fastq.gz 4638710089 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 583bf751-7c4c-449e-b192-7216796ab09b 3d6f0e92ef1fef8a12ae758dbcca0d99 {"aliquot_tag": "ALQ_cab54c75", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.RNA-Seq.transcriptome.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.transcriptome.gdc_realn.bam 9981291329 BAM transcriptome harmonized CPTAC3 06af9ac7-5b55-4633-b73c-454b038d596a c27b85a1e4d0c2c83c77326ba565e36d {"aliquot_tag": "ALQ_cab54c75", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.WGS.N C3N-02971 PDA WGS blood_normal CPT0187270002 CPT0187270002.WholeGenome.RP-1303.bam 63316143273 BAM submitted_aligned CPTAC3 b52ac77b-1227-4e08-bb8c-9abe69061a43 322650965121f8b62a0574af04c27ebe {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02971.WGS.N.hg38 C3N-02971 PDA WGS blood_normal CPT0187270002 fd578434-4744-4277-b26d-75012c4a5918_wgs_gdc_realn.bam 92449047591 BAM harmonized CPTAC3 e79b4170-bdaf-40b0-9ec4-c9253ab925d0 1289704ccfa84deafc12ab108f6e1d6a {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02971.WGS.T C3N-02971 PDA WGS tumor CPT0185920007 CPT0185920007.WholeGenome.RP-1303.bam 110060113703 BAM submitted_aligned CPTAC3 60e0b149-9e16-47ef-9dcf-47f6efef0128 7032166c750099c4c6a0e80de66451db {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.WGS.T.hg38 C3N-02971 PDA WGS tumor CPT0185920007 c0cfa53c-5e4a-4142-809a-5961cee26733_wgs_gdc_realn.bam 157644869780 BAM harmonized CPTAC3 d88c905c-d091-4401-994f-56d358caec66 9debb921fc4b1c07b1c3c597a3556a9d {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.WXS.N C3N-02971 PDA WXS blood_normal CPT0187270002 CPT0187270002.WholeExome.RP-1303.bam 23755912619 BAM submitted_aligned CPTAC3 1247ba8a-80ee-44eb-8894-0b566454fa5a 6d10d562d6c193d2dcf32e4fb68e8af2 {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02971.WXS.N.hg38 C3N-02971 PDA WXS blood_normal CPT0187270002 fd578434-4744-4277-b26d-75012c4a5918_wxs_gdc_realn.bam 32395669877 BAM harmonized CPTAC3 fbc9f5b3-10ca-4ffc-8ffd-2d18c473f98d c0a3e4578687488461225d7f0540eeba {"aliquot_tag": "ALQ_8187282", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02971.WXS.T C3N-02971 PDA WXS tumor CPT0185920007 CPT0185920007.WholeExome.RP-1303.bam 49566004832 BAM submitted_aligned CPTAC3 a6b9e294-b305-4224-a709-1c0f6349d834 e29a86662b5df824927045c76eede3c0 {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02971.WXS.T.hg38 C3N-02971 PDA WXS tumor CPT0185920007 c0cfa53c-5e4a-4142-809a-5961cee26733_wxs_gdc_realn.bam 68659877526 BAM harmonized CPTAC3 13c8e243-3b8a-4013-810e-4ec75e6ae351 3172a1db90edb5b1b184a94532d56f4e {"aliquot_tag": "ALQ_4dcae897", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02972.MethArray.Green.T C3N-02972 UCEC Methylation_Array tumor CPT0159220011 203561450103_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8b91a199-948f-4a7b-8b3f-63ddeee0af6c 0f6baff8d45ab14901ea8ec977669e49 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.MethArray.Red.T C3N-02972 UCEC Methylation_Array tumor CPT0159220011 203561450103_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b12d4fb2-a33a-4d60-bac2-e01a6320a06a 895227438e0c264353ab8ab53d933109 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.miRNA-Seq.S1_L001_R1.T C3N-02972 UCEC miRNA-Seq tumor CPT0159220014 190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L001_R1_001.unaln.bam 251959666 BAM S1_L001_R1 submitted_unaligned CPTAC3 6cd96684-43e2-4ca2-be89-763fa9e955a6 37040a1be8073bfe74d47362e8d0585c {"aliquot_tag": "ALQ_fbba070a", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.miRNA-Seq.T.hg38 C3N-02972 UCEC miRNA-Seq tumor CPT0159220014 ab03df7e-c232-4c3b-8e33-9730a40d6c45_mirnaseq_gdc_realn.bam 282997263 BAM harmonized CPTAC3 abd52b5b-f5fa-40fb-9387-dca8a0a9cf9c 64d08b4ac4b4b076269d5fbec467e328 {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.chimeric.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.chimeric.gdc_realn.bam 39563596 BAM chimeric harmonized CPTAC3 8447a6e8-a260-4bc0-8020-15340754048d 9057549d476f1840c19de11c322e163d {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.chimeric.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.chimeric.gdc_realn.bam 15282155 BAM chimeric harmonized CPTAC3 1e412579-4463-4c42-bd4e-7f8620ed273e ca42c311d2e745b7fb3c9448f59e28d3 {"aliquot_tag": "ALQ_5a2b4db4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.genomic.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.genomic.gdc_realn.bam 9043830734 BAM genomic harmonized CPTAC3 c9dfd1cd-2d91-48bb-a73e-9a6b964cbe4e 4447516d14f1b0e8cc5f1c45b33bd2c6 {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.genomic.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.genomic.gdc_realn.bam 4850090298 BAM genomic harmonized CPTAC3 b25cac48-7bf7-4d5b-9a6f-be0ddb185fbe 76825c7ddc4455fe3b9767f32ad0c562 {"aliquot_tag": "ALQ_5a2b4db4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.S11_L004_R1.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R1_001.fastq.gz 4357805183 FASTQ S11_L004_R1 submitted_unaligned CPTAC3 3c0284c8-93df-4718-a80f-0a9d7beb2895 79771fbfad83a8c4fa8b4b529317a000 {"aliquot_tag": "ALQ_fbba070a", "sample": "S11", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.S11_L004_R2.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R2_001.fastq.gz 4900497558 FASTQ S11_L004_R2 submitted_unaligned CPTAC3 2da76d66-af60-45f8-8039-9d85d4ffbf85 8996dca99ac09d3ffc8d91ba64850938 {"aliquot_tag": "ALQ_fbba070a", "sample": "S11", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.S8_R1.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R1_001.fastq.gz 2734251106 FASTQ S8_R1 submitted_unaligned CPTAC3 9dfac3d7-41d7-495b-9ca5-11e7f7593ad1 9af06822fa5cb43c4f307f11b3c5667b {"aliquot_tag": "ALQ_5a2b4db4", "sample": "S8", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.S8_R2.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R2_001.fastq.gz 2992165707 FASTQ S8_R2 submitted_unaligned CPTAC3 01d552fa-f768-4c0b-b91d-77d2c82cc5c8 0ff50325c74804f5b8cc12b2895ca548 {"aliquot_tag": "ALQ_5a2b4db4", "sample": "S8", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.transcriptome.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.transcriptome.gdc_realn.bam 11846621868 BAM transcriptome harmonized CPTAC3 3d83365e-cfc2-448d-95c7-d9bac62bec16 fd07aff2679d500c76557b032d89e2d9 {"aliquot_tag": "ALQ_fbba070a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.RNA-Seq.transcriptome.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.transcriptome.gdc_realn.bam 3959662198 BAM transcriptome harmonized CPTAC3 223ba723-dce6-4bca-97c6-31f01760e7fd 71cc7fb1f20ba0cd98186c78daa2389f {"aliquot_tag": "ALQ_5a2b4db4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.WGS.N C3N-02972 UCEC WGS blood_normal CPT0159480002 CPT0159480002.WholeGenome.RP-1303.bam 60306456058 BAM submitted_aligned CPTAC3 49f85e07-8fa5-4cb9-9137-149b57e21c4a 64d6d7084d0b0ac43bb2f3a3c3bf69a1 {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02972.WGS.N.hg38 C3N-02972 UCEC WGS blood_normal CPT0159480002 5d44d14e-6172-48b0-b4a5-963730083704_wgs_gdc_realn.bam 88324870279 BAM harmonized CPTAC3 f54a437c-1ce6-470a-8665-a3b4a5a6c291 eb2b8b24c3af21dc3a37e3b0ab188f1a {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02972.WGS.T C3N-02972 UCEC WGS tumor CPT0159220011 CPT0159220011.WholeGenome.RP-1303.bam 73552112421 BAM submitted_aligned CPTAC3 374f5b1e-acaa-4ab9-b834-ce2f9b7cba39 b9c3f0e860f872ecf27d2353e5d1bea6 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.WGS.T.hg38 C3N-02972 UCEC WGS tumor CPT0159220011 724e0150-c5d9-4b0c-b1b5-3e60ee4bc265_wgs_gdc_realn.bam 107105004028 BAM harmonized CPTAC3 5041f7c7-6b00-4048-aa16-e181701d0747 17ed5171bb5b288a20f4958bbf6d8413 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.WXS.N C3N-02972 UCEC WXS blood_normal CPT0159480002 CPT0159480002.WholeExome.RP-1303.bam 27329937281 BAM submitted_aligned CPTAC3 6e5b07b0-dfb2-4868-a91c-2023479050f9 66a5321b1a99acb94dc1ac6f7c101216 {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02972.WXS.N.hg38 C3N-02972 UCEC WXS blood_normal CPT0159480002 5d44d14e-6172-48b0-b4a5-963730083704_wxs_gdc_realn.bam 37216731955 BAM harmonized CPTAC3 35f5b866-38ef-40ac-9af9-60858b6eab68 9b58f65bc9563f7a854a7b5a2a38e245 {"aliquot_tag": "ALQ_972b68c2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02972.WXS.T C3N-02972 UCEC WXS tumor CPT0159220011 CPT0159220011.WholeExome.RP-1303.bam 19134223234 BAM submitted_aligned CPTAC3 f0e1108d-df7e-4ac7-ad7d-5da9e5e53aa9 2e1c1a8509b98820c1d0b3d4879d256f {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02972.WXS.T.hg38 C3N-02972 UCEC WXS tumor CPT0159220011 724e0150-c5d9-4b0c-b1b5-3e60ee4bc265_wxs_gdc_realn.bam 26851863804 BAM harmonized CPTAC3 367a6783-ba33-432e-8958-cd55857b51b5 b2a3d34c087a419d1c07d4cf1b6b5068 {"aliquot_tag": "ALQ_8bd0f385", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02973.MethArray.Green.A C3N-02973 LUAD Methylation_Array tissue_normal CPT0158830006 203219720176_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 8dbca3b0-4103-4e33-8f50-dde5283114ef 4b4052f2b33964c0c754937455c6943b {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.MethArray.Green.T C3N-02973 LUAD Methylation_Array tumor CPT0158800006 203220070102_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ea2ddd02-f7a5-4ff8-a2a5-b7af6565fee6 addf97a86651b75e7bc67e19173ed3c0 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.MethArray.Red.A C3N-02973 LUAD Methylation_Array tissue_normal CPT0158830006 203219720176_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 cd0b343a-e45c-487d-9225-99b851e9d9e3 735ec4ce5269fc2a087335635acd8652 {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.MethArray.Red.T C3N-02973 LUAD Methylation_Array tumor CPT0158800006 203220070102_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 17f945fd-d50e-46f9-a5cc-97c9bb895c13 dca0291cf6fe71ce9bae5facb494e182 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.miRNA-Seq.A.hg38 C3N-02973 LUAD miRNA-Seq tissue_normal CPT0158830009 fea59635-fc9b-48dd-a526-2d4e89b5dca2_mirnaseq_gdc_realn.bam 174713434 BAM harmonized CPTAC3 ca500532-98fe-467c-bd8c-055d2bf6650e c149af322bed1e4b83c27c3ee0c3c6a3 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.miRNA-Seq.S10_L008_R1.A C3N-02973 LUAD miRNA-Seq tissue_normal CPT0158830009 190130_UNC31-K00269_0188_BH2FGCBBXY_GATCAG_S10_L008_R1_001.unaln.bam 154832916 BAM S10_L008_R1 submitted_unaligned CPTAC3 4cf12ebf-354f-4e9b-afe8-2d1b44555df1 8e2937f327079b0c6d1646c178f107cb {"aliquot_tag": "ALQ_a69c4b94", "sample": "S10", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.miRNA-Seq.S41_L007_R1.T C3N-02973 LUAD miRNA-Seq tumor CPT0158800009 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L007_R1_001.unaln.bam 191567294 BAM S41_L007_R1 submitted_unaligned CPTAC3 37fb9554-0da8-4110-ba32-39aff2523ae1 0a539a42e42daf6d66bf13bea703c760 {"aliquot_tag": "ALQ_e13c3144", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.miRNA-Seq.T.hg38 C3N-02973 LUAD miRNA-Seq tumor CPT0158800009 02d35332-5cb6-4910-b3b7-797585f1bd80_mirnaseq_gdc_realn.bam 211221195 BAM harmonized CPTAC3 7f4a72d1-7609-43d2-87c7-432b6a615b92 09ee7e07279c84bf19f74cf5c93ea0a6 {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.RNA-Seq.chimeric.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.chimeric.gdc_realn.bam 237879140 BAM chimeric harmonized CPTAC3 8e9e916d-79bd-4876-ad93-63e5071c072e 9dca7d3e880c819036f485bc212aff52 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.RNA-Seq.chimeric.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.chimeric.gdc_realn.bam 55937617 BAM chimeric harmonized CPTAC3 9df532b3-6283-46ad-97b0-6cafb83b9840 793633ea82c1d2ecef3ed1c58857f2ea {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.RNA-Seq.genomic.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.genomic.gdc_realn.bam 6559969052 BAM genomic harmonized CPTAC3 63c2b415-9b7c-4d24-bee2-18e044f6e3fe efd87186c942390d28310f54afe41774 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.RNA-Seq.genomic.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.genomic.gdc_realn.bam 10834040745 BAM genomic harmonized CPTAC3 1883ceb5-dba8-4fe3-acac-d3cd60000694 66d7d82944e70cbd6615aea50cf724a6 {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.RNA-Seq.S16_L004_R1.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R1_001.fastq.gz 4812354130 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 b17cc448-3b71-4cc4-aa47-d20cad3f7f6b a9e92ea194b75e42cc8f9e4b937cf1e5 {"aliquot_tag": "ALQ_e13c3144", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.RNA-Seq.S16_L004_R2.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R2_001.fastq.gz 5409184919 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 fc89f663-b4ea-407d-8eef-502ce491751f 1c0748e7677b5e2e864f27cfd4e46806 {"aliquot_tag": "ALQ_e13c3144", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.RNA-Seq.S3_L004_R1.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R1_001.fastq.gz 2757636572 FASTQ S3_L004_R1 submitted_unaligned CPTAC3 f48b615f-ea3c-4346-af45-f59438d6dd33 c2d30faa852dc0814ae34388ef25eedd {"aliquot_tag": "ALQ_a69c4b94", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.RNA-Seq.S3_L004_R2.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R2_001.fastq.gz 2988808092 FASTQ S3_L004_R2 submitted_unaligned CPTAC3 15a908e8-10e4-4e68-bb6d-549d3ffc8419 c4ba0b2561c13764eebde3ff033d9e4c {"aliquot_tag": "ALQ_a69c4b94", "sample": "S3", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.RNA-Seq.transcriptome.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.transcriptome.gdc_realn.bam 6877571131 BAM transcriptome harmonized CPTAC3 a1cf8e21-b8d6-4d33-9215-625147f71549 29cdd7d1a5f576a0d7feffadc2f09d35 {"aliquot_tag": "ALQ_a69c4b94", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.RNA-Seq.transcriptome.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.transcriptome.gdc_realn.bam 10499744693 BAM transcriptome harmonized CPTAC3 de4fd987-5ca5-4de2-87aa-2907e4b8f368 05ec2391c1f4afcd41a9cf0c3f026067 {"aliquot_tag": "ALQ_e13c3144", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.WGS.N C3N-02973 LUAD WGS blood_normal CPT0159500002 CPT0159500002.WholeGenome.RP-1303.bam 54057109946 BAM submitted_aligned CPTAC3 ecf6c674-5e47-483f-b22e-f98966358e14 602e30b18208c617abc3f9f1d44e72ac {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02973.WGS.N.hg38 C3N-02973 LUAD WGS blood_normal CPT0159500002 9ad39505-46ad-4e09-b88a-b18441670098_wgs_gdc_realn.bam 78887793882 BAM harmonized CPTAC3 16699946-b149-4b02-90f5-e09d98ba2ab8 78ffa1923d6317dfbd2dd9a21e6275ae {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02973.WGS.T C3N-02973 LUAD WGS tumor CPT0158800006 CPT0158800006.WholeGenome.RP-1303.bam 121515535084 BAM submitted_aligned CPTAC3 e2c2f136-0a33-4533-913a-c931231e6680 99e202c36e843f101d6896cefbeed1e6 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.WGS.T.hg38 C3N-02973 LUAD WGS tumor CPT0158800006 7ba6255e-6ab4-40f8-b3a0-944a48972120_wgs_gdc_realn.bam 176910753177 BAM harmonized CPTAC3 7f6676b8-6406-422e-a632-b18929028713 429786d6c041f2f47045365c1275e7c4 {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.WXS.A C3N-02973 LUAD WXS tissue_normal CPT0158830006 CPT0158830006.WholeExome.RP-1303.bam 21354015902 BAM submitted_aligned CPTAC3 ab57447e-4330-46a0-a794-b34184b6e6f6 aa9347028e768829f3deca59a54e3eab {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.WXS.A.hg38 C3N-02973 LUAD WXS tissue_normal CPT0158830006 b08b59bd-ba33-4fd0-8e84-9774e86409ed_wxs_gdc_realn.bam 29256740220 BAM harmonized CPTAC3 3c3c166f-5743-4715-a7a3-99555ca19222 65e10be408e412299f47ad8a85973639 {"aliquot_tag": "ALQ_36235605", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02973.WXS.N C3N-02973 LUAD WXS blood_normal CPT0159500002 CPT0159500002.WholeExome.RP-1303.bam 23366159210 BAM submitted_aligned CPTAC3 030498bd-2ece-41c5-9285-b2e50657ffd1 e5c7c3de872e2f290f682327fc7d48ee {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02973.WXS.N.hg38 C3N-02973 LUAD WXS blood_normal CPT0159500002 9ad39505-46ad-4e09-b88a-b18441670098_wxs_gdc_realn.bam 32624154288 BAM harmonized CPTAC3 f8b28c64-1b73-4b17-8b86-cab8c95c69fc 347896dab5a03293ecdf97fc3103306d {"aliquot_tag": "ALQ_6c07f0a6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02973.WXS.T C3N-02973 LUAD WXS tumor CPT0158800006 CPT0158800006.WholeExome.RP-1303.bam 21021250094 BAM submitted_aligned CPTAC3 be356b9a-e2d2-4369-9aad-3bd97161c9bf 3354027b03b26bedfbfae3d11c7bbe7a {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02973.WXS.T.hg38 C3N-02973 LUAD WXS tumor CPT0158800006 7ba6255e-6ab4-40f8-b3a0-944a48972120_wxs_gdc_realn.bam 29708983040 BAM harmonized CPTAC3 dc34c68b-4cf3-4775-9153-9e0d4395d4e5 151b3299ea8168cb2d715462ab06843c {"aliquot_tag": "ALQ_71832cd5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02976.MethArray.Green.T C3N-02976 UCEC Methylation_Array tumor CPT0188030006 203561450048_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 eb9c350c-5031-4d6e-8799-177dfdcee9dd 3eddf0173c529803a3b5411cdc680a3f {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.MethArray.Red.T C3N-02976 UCEC Methylation_Array tumor CPT0188030006 203561450048_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 c8fefe7e-4008-4f88-bea6-8208df89178e 1b934544676aba2717f16b49f67e44db {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.chimeric.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.chimeric.gdc_realn.bam 38813532 BAM chimeric harmonized CPTAC3 5fbffeb4-4b0b-4c22-b964-37e0d3dc9977 3e9dc1931d862150d21d2c54a187f843 {"aliquot_tag": "ALQ_d1cadc28", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.chimeric.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.chimeric.gdc_realn.bam 436249706 BAM chimeric harmonized CPTAC3 67598aea-9575-4163-87a0-b007fa9a987a c42b95b9fceb2e534c8adea97d20a448 {"aliquot_tag": "ALQ_7c348a01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.genomic.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.genomic.gdc_realn.bam 9604229848 BAM genomic harmonized CPTAC3 af117790-256b-43f3-bb98-a250d0c97119 a586f5de20b55de484f2eda8b2ac6d40 {"aliquot_tag": "ALQ_d1cadc28", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.genomic.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.genomic.gdc_realn.bam 20409457367 BAM genomic harmonized CPTAC3 0ad318d9-d110-4419-b9ab-ae4fa7ae3b54 7a70e57857c649e1a44bd9b73ab83544 {"aliquot_tag": "ALQ_7c348a01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.S17_L005_R1.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R1_001.fastq.gz 4562895528 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 cd351f85-c471-4600-b1bf-c498f24a1528 74a16eaeb3aa01fc980d55be6fde923e {"aliquot_tag": "ALQ_d1cadc28", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.S17_L005_R2.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R2_001.fastq.gz 5066100927 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 9b7999a6-39fe-4bd6-9ae0-99bb2ba7f7a7 a9749508f457d7d92e46f1d3953c7fe5 {"aliquot_tag": "ALQ_d1cadc28", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.S78_R1.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R1_001.fastq.gz 13891695391 FASTQ S78_R1 submitted_unaligned CPTAC3 e5206777-7329-4404-88bd-b482451fd621 3d82c30d7143c78a61db29ac33555220 {"aliquot_tag": "ALQ_7c348a01", "sample": "S78", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.S78_R2.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R2_001.fastq.gz 14324623373 FASTQ S78_R2 submitted_unaligned CPTAC3 ed50c687-62c5-428a-89e2-6e9a516c6792 8e9ded5d7c5f87ccb4b4d3359aafb72b {"aliquot_tag": "ALQ_7c348a01", "sample": "S78", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.transcriptome.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.transcriptome.gdc_realn.bam 12116338912 BAM transcriptome harmonized CPTAC3 b02f331a-35b8-4983-bb12-d00b703fcda7 3b09438e82a0a0eebc0b9cb364d74b28 {"aliquot_tag": "ALQ_d1cadc28", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.RNA-Seq.transcriptome.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.transcriptome.gdc_realn.bam 10735699493 BAM transcriptome harmonized CPTAC3 ad832e7c-a6fa-41db-ab3d-c0d98e22fb08 e74f08ad452bd7807276e93c989a8616 {"aliquot_tag": "ALQ_7c348a01", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.WGS.N C3N-02976 UCEC WGS blood_normal CPT0188090002 CPT0188090002.WholeGenome.RP-1303.bam 63445121214 BAM submitted_aligned CPTAC3 da4f69b4-2f83-4d92-bff5-485b9758795e 82a124cf6eb6ab54a44e2996ba577cfa {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02976.WGS.N.hg38 C3N-02976 UCEC WGS blood_normal CPT0188090002 ac5b4160-c621-4774-9c85-773ea9a3cfb7_wgs_gdc_realn.bam 91032302379 BAM harmonized CPTAC3 323bdba9-d5dc-4645-a411-a89b97662c8c 9e31f353ade4ad35cef2cb63b5f32ba5 {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02976.WGS.T C3N-02976 UCEC WGS tumor CPT0188030006 CPT0188030006.WholeGenome.RP-1303.bam 104793850021 BAM submitted_aligned CPTAC3 253723ca-dd15-4062-b3a0-e7a521a7d566 2f8f76c4c2da8302e271e27076929a61 {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.WGS.T.hg38 C3N-02976 UCEC WGS tumor CPT0188030006 7d4f6083-ea93-49eb-b8dc-e359158f919c_wgs_gdc_realn.bam 152494972084 BAM harmonized CPTAC3 e284a0c5-32eb-45d9-a97b-399568005a01 f6ac9eb7f353a7c32769937a7e34620d {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.WXS.N C3N-02976 UCEC WXS blood_normal CPT0188090002 CPT0188090002.WholeExome.RP-1303.bam 25027889700 BAM submitted_aligned CPTAC3 c7f11560-5c5a-4251-9fa3-ab68c913325d 59fec43ec0a65241343b732319d6b98f {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02976.WXS.N.hg38 C3N-02976 UCEC WXS blood_normal CPT0188090002 ac5b4160-c621-4774-9c85-773ea9a3cfb7_wxs_gdc_realn.bam 34297867321 BAM harmonized CPTAC3 bf798a9f-d0c6-4a06-b36c-f6ff866eb7a1 0c069c7206eac12e59363393197d73f8 {"aliquot_tag": "ALQ_ca81d01", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02976.WXS.T C3N-02976 UCEC WXS tumor CPT0188030006 CPT0188030006.WholeExome.RP-1303.bam 28605305878 BAM submitted_aligned CPTAC3 88b0acd7-b2d8-412d-b62b-65c953bc10f4 1b39e0c1b6625d0f3512279b01221500 {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02976.WXS.T.hg38 C3N-02976 UCEC WXS tumor CPT0188030006 7d4f6083-ea93-49eb-b8dc-e359158f919c_wxs_gdc_realn.bam 39394696639 BAM harmonized CPTAC3 73da2d7f-d93f-439f-8227-e33889edef76 b4b329bbc2d116d17d3e26927e87bb3d {"aliquot_tag": "ALQ_4175c1b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.MethArray.Green.T C3N-02978 UCEC Methylation_Array tumor CPT0244470006 203561450041_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 df9ee8fc-471c-4cb2-b979-0c3ed41c9ad3 68be30fe4639627b2b012de11ecc2f2c {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.MethArray.Red.T C3N-02978 UCEC Methylation_Array tumor CPT0244470006 203561450041_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 d17a1a35-c55f-422c-9304-eaacc1073906 0c485e4d575aebc86362dedc6851ac64 {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.miRNA-Seq.S3_L001_R1.T C3N-02978 UCEC miRNA-Seq tumor CPT0244470009 190508_UNC31-K00269_0215_BH7FYKBBXY_TTAGGC_S3_L001_R1_001.unaln.bam 206913870 BAM S3_L001_R1 submitted_unaligned CPTAC3 46a40edd-b9c9-46e3-8bbe-206a76693869 425206dfe7722c7e177d0c07a9276131 {"aliquot_tag": "ALQ_16597b00", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.miRNA-Seq.T.hg38 C3N-02978 UCEC miRNA-Seq tumor CPT0244470009 04bd8ab7-4b40-44b5-a699-c3b02768a528_mirnaseq_gdc_realn.bam 236421336 BAM harmonized CPTAC3 41503d04-661c-4940-8cda-3af73738a994 3488a35bf4b965e9be2822e132257e88 {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.chimeric.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.chimeric.gdc_realn.bam 27223633 BAM chimeric harmonized CPTAC3 64e93287-a219-4158-8f1e-825e696af4bf 4dc245d41793a8ce3bff386c854967f0 {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.chimeric.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.chimeric.gdc_realn.bam 231891398 BAM chimeric harmonized CPTAC3 8d6bd61e-25af-41a1-8252-217a1d3cc2eb 066e2b7f67a34414737ece2bcbb89af2 {"aliquot_tag": "ALQ_84a44eb0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.genomic.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.genomic.gdc_realn.bam 7403973356 BAM genomic harmonized CPTAC3 490446b7-81d8-4b1e-bf7a-5ffd2e575072 84c1caa13965e3a7e1b90f351dda591f {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.genomic.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.genomic.gdc_realn.bam 11128514756 BAM genomic harmonized CPTAC3 49f6af4d-dbcb-4677-8f8c-3da559f063cb 5a14865d0e07a9e8a8a8cc2133183f0d {"aliquot_tag": "ALQ_84a44eb0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.S13_L004_R1.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R1_001.fastq.gz 3552227283 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 a94dd2fe-40de-47bb-a980-49aaa4d2d3b6 855472d39d21e686b742418a4dbaa85c {"aliquot_tag": "ALQ_16597b00", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.S13_L004_R2.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R2_001.fastq.gz 3992956567 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 2041c9b6-0641-48f1-8fc5-1e594031e2d8 c1c1caa3c060ae3a04146d3e0573e3fa {"aliquot_tag": "ALQ_16597b00", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.S79_R1.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R1_001.fastq.gz 6920812759 FASTQ S79_R1 submitted_unaligned CPTAC3 06316754-64be-4277-a073-6f830c61e9c6 7a3a8d34e45f8a2de1b723f468449625 {"aliquot_tag": "ALQ_84a44eb0", "sample": "S79", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.S79_R2.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R2_001.fastq.gz 7160560179 FASTQ S79_R2 submitted_unaligned CPTAC3 c20409fc-f0e4-47f7-8a8f-55600a2047b9 544de996c2172be767c77dbea346c15b {"aliquot_tag": "ALQ_84a44eb0", "sample": "S79", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.transcriptome.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.transcriptome.gdc_realn.bam 12047110662 BAM transcriptome harmonized CPTAC3 b173d6a1-f012-4c9e-a6cd-efd821714e87 e3a9cf1fa303de1e2c0a881320c56edb {"aliquot_tag": "ALQ_16597b00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.RNA-Seq.transcriptome.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.transcriptome.gdc_realn.bam 5239012890 BAM transcriptome harmonized CPTAC3 e3e92b94-430f-40a0-b6bd-adf4b6b6bbee f3e172a47267a55c6444ef0ce521d024 {"aliquot_tag": "ALQ_84a44eb0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.WGS.N C3N-02978 UCEC WGS blood_normal CPT0244490002 CPT0244490002.WholeGenome.RP-1303.bam 69114889782 BAM submitted_aligned CPTAC3 33c9d10d-90c2-4cae-8a5b-b13cf5127ea0 f2325c4bfcf0a9417fa282982e066f5b {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02978.WGS.N.hg38 C3N-02978 UCEC WGS blood_normal CPT0244490002 c4fa174e-cde5-4659-9d2e-58ed1b380327_wgs_gdc_realn.bam 100831158639 BAM harmonized CPTAC3 daa49700-ac1a-42a5-914f-a8e933761ad8 2581293bf8ddf90b539e5d5a3c01a98b {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02978.WGS.T C3N-02978 UCEC WGS tumor CPT0244470006 CPT0244470006.WholeGenome.RP-1303.bam 85381652373 BAM submitted_aligned CPTAC3 4e289fa4-d13f-41d7-b689-d7f6b9b17b57 4f1245af06136fe98da669781638a3ce {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.WGS.T.hg38 C3N-02978 UCEC WGS tumor CPT0244470006 03188417-8c41-4b96-9fc3-e1676616de60_wgs_gdc_realn.bam 124444262000 BAM harmonized CPTAC3 4378a679-3aad-467e-af8b-9f299ed4e9d1 9a5c76ceebd7d4e91c999f6e6670fcca {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.WXS.N C3N-02978 UCEC WXS blood_normal CPT0244490002 CPT0244490002.WholeExome.RP-1303.bam 23327342019 BAM submitted_aligned CPTAC3 4ddb1c17-3dff-4855-a508-1c65f2c0d3b8 39f7cec489f7f9fd2fa714c0ef1dcf61 {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02978.WXS.N.hg38 C3N-02978 UCEC WXS blood_normal CPT0244490002 c4fa174e-cde5-4659-9d2e-58ed1b380327_wxs_gdc_realn.bam 32388949556 BAM harmonized CPTAC3 8099e860-6b09-4b7c-905e-c1075febecba d79283dd3e5d6402f3a7ac61facd3d51 {"aliquot_tag": "ALQ_3ebb1ce9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02978.WXS.T C3N-02978 UCEC WXS tumor CPT0244470006 CPT0244470006.WholeExome.RP-1303.bam 26626547690 BAM submitted_aligned CPTAC3 758be895-c501-4473-8e20-c88e7f7b8648 6c2d8efdc801b84bad9e2c813ae5ddb0 {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02978.WXS.T.hg38 C3N-02978 UCEC WXS tumor CPT0244470006 03188417-8c41-4b96-9fc3-e1676616de60_wxs_gdc_realn.bam 36857640373 BAM harmonized CPTAC3 b2cd9ea6-4244-4dd9-9bed-e44a8b17a060 c0530aacc06f2d5b41887a2355555280 {"aliquot_tag": "ALQ_86e66691", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.MethArray.Green.T C3N-02979 UCEC Methylation_Array tumor CPT0188100007 203561620050_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c918f139-1c73-44bc-b245-f03c5bd8c3c3 cde6a5dd7cbd811f34b2ef7ab59947aa {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.MethArray.Red.T C3N-02979 UCEC Methylation_Array tumor CPT0188100007 203561620050_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 66171c33-a6a1-44e2-8e30-b5da7fd21527 168e884c4be593b2d7aa5ff3e439371e {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.miRNA-Seq.S21_L003_R1.T C3N-02979 UCEC miRNA-Seq tumor CPT0188100010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 129258275 BAM S21_L003_R1 submitted_unaligned CPTAC3 4d5892d2-6e87-43c3-b97d-83aed7d481c0 d59d1a751f6e41b3fd77822964dae1ac {"aliquot_tag": "ALQ_3df1fcb8", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.miRNA-Seq.T.hg38 C3N-02979 UCEC miRNA-Seq tumor CPT0188100010 108f2af1-af04-4d55-9877-853c7e0c0fb2_mirnaseq_gdc_realn.bam 146879714 BAM harmonized CPTAC3 8930c62f-a0ef-44fb-b9d1-de2ea0358cd8 c0ba73ffff97897bbbce5a1db053519f {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.chimeric.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.chimeric.gdc_realn.bam 45062566 BAM chimeric harmonized CPTAC3 49e93a4c-f568-4022-a380-a8c8cb723ac4 4bf8f6f5afff92f60e51b15a5fd43a59 {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.chimeric.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.chimeric.gdc_realn.bam 178821108 BAM chimeric harmonized CPTAC3 4b0475cb-43c2-4bb6-8c3b-1272ccc9121b b3471f9e295df692d0cae8a55baf6cd2 {"aliquot_tag": "ALQ_b9c46700", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.genomic.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.genomic.gdc_realn.bam 7892799825 BAM genomic harmonized CPTAC3 95eb998f-f540-479f-bfd7-750a837aed69 1cf9673d7c6181f5443e443245a7e5d1 {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.genomic.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.genomic.gdc_realn.bam 8599731049 BAM genomic harmonized CPTAC3 d0062090-8620-485b-8cec-70059ccd650e 7ca7b4ea004b7876ced6098bddd71b42 {"aliquot_tag": "ALQ_b9c46700", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.S19_L005_R1.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3742141416 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 264d55c9-cbb3-4385-b638-960b5669b4d4 32492400738a9f48ad9432c93abfd0e2 {"aliquot_tag": "ALQ_3df1fcb8", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.S19_L005_R2.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4278918205 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 fc0ac368-29d4-46b9-a358-9eedd311e503 915a099830b77e0f5f68690246f54785 {"aliquot_tag": "ALQ_3df1fcb8", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.S50_R1.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R1_001.fastq.gz 6946570471 FASTQ S50_R1 submitted_unaligned CPTAC3 228e391f-834d-46c4-aa06-d4676d90ff55 45a95e15270e38ef0c45f2b04ba94bf6 {"aliquot_tag": "ALQ_b9c46700", "sample": "S50", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.S50_R2.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R2_001.fastq.gz 7198005683 FASTQ S50_R2 submitted_unaligned CPTAC3 50f2e324-fc59-4f61-a6bb-fcd96a9e4f91 3f4e05ea21122dde012951d068f71a8f {"aliquot_tag": "ALQ_b9c46700", "sample": "S50", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.transcriptome.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.transcriptome.gdc_realn.bam 10372122157 BAM transcriptome harmonized CPTAC3 81dbd3b6-6b07-44df-afb3-0e5f5935ee6f 476acd35c1efefe6659e0df8ed4f0d68 {"aliquot_tag": "ALQ_3df1fcb8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.RNA-Seq.transcriptome.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.transcriptome.gdc_realn.bam 5802091016 BAM transcriptome harmonized CPTAC3 bdd619e2-8e83-412c-a5ed-c4b80ac6ec1b ae31916e89a623ccdb4f3460094ef6ab {"aliquot_tag": "ALQ_b9c46700", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.WGS.N C3N-02979 UCEC WGS blood_normal CPT0188120002 CPT0188120002.WholeGenome.RP-1303.bam 84174597332 BAM submitted_aligned CPTAC3 a9965c83-1b3d-49a9-988b-8281cd2f9de0 d1018dd1e42a203d68805627f929631f {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02979.WGS.N.hg38 C3N-02979 UCEC WGS blood_normal CPT0188120002 89a78c3a-06b4-4949-ac86-9da3271336a6_wgs_gdc_realn.bam 124502640676 BAM harmonized CPTAC3 ece98cec-f6b5-466d-b310-89d2f58b1c04 cde44d4fba9146328bb141895f903fbf {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02979.WGS.T C3N-02979 UCEC WGS tumor CPT0188100007 CPT0188100007.WholeGenome.RP-1303.bam 52705746495 BAM submitted_aligned CPTAC3 68f7b81e-7995-49bc-a059-851f18ba14d5 ccc18e4496c2899e7756ef112060aca5 {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.WGS.T.hg38 C3N-02979 UCEC WGS tumor CPT0188100007 688e4c8e-ff16-4ca3-aec7-014035da8239_wgs_gdc_realn.bam 77795750485 BAM harmonized CPTAC3 f0d3319b-6573-4859-b1ab-135c71e8c5ac b832d84e2f220171614d423c19b42891 {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.WXS.N C3N-02979 UCEC WXS blood_normal CPT0188120002 CPT0188120002.WholeExome.RP-1303.bam 24092526395 BAM submitted_aligned CPTAC3 318df89f-5396-42e0-a7e3-a19c73c9946e d88db1c7606bff1b4a470ca986430df5 {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02979.WXS.N.hg38 C3N-02979 UCEC WXS blood_normal CPT0188120002 89a78c3a-06b4-4949-ac86-9da3271336a6_wxs_gdc_realn.bam 32766113585 BAM harmonized CPTAC3 315e198c-632e-43a2-a33c-61678fbc7493 c6e463418c5b06caf2de73ca2ace57f4 {"aliquot_tag": "ALQ_b024ffb5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02979.WXS.T C3N-02979 UCEC WXS tumor CPT0188100007 CPT0188100007.WholeExome.RP-1303.bam 39273712736 BAM submitted_aligned CPTAC3 b87d63f7-307a-4833-99df-5334de5a422b 610e308cb1a939923597eeccdee4c0dd {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02979.WXS.T.hg38 C3N-02979 UCEC WXS tumor CPT0188100007 688e4c8e-ff16-4ca3-aec7-014035da8239_wxs_gdc_realn.bam 54455032265 BAM harmonized CPTAC3 485c5204-9628-4a50-867b-2be5e90c7980 c984ddaa0e201cfa543738c6267c8a89 {"aliquot_tag": "ALQ_ba8e585a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.MethArray.Green.T C3N-02994 UCEC Methylation_Array tumor CPT0248000006 203561620064_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 24099cda-84fc-4cf7-be4c-9c54793204ac f7cf882cdad1d65e8fbbdaa9b4d1463c {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.MethArray.Red.T C3N-02994 UCEC Methylation_Array tumor CPT0248000006 203561620064_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 a04dddda-c4d1-49c4-ab00-26103ab06613 afd79d5d5b2a83a0c97caa03311d13b2 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.miRNA-Seq.S9_L001_R1.T C3N-02994 UCEC miRNA-Seq tumor CPT0248000009 190508_UNC31-K00269_0215_BH7FYKBBXY_GATCAG_S9_L001_R1_001.unaln.bam 143642551 BAM S9_L001_R1 submitted_unaligned CPTAC3 d3c55920-36ae-48cc-b4cb-b8e21c50384d 78bed0f60adc6c9395c4d6a9cc33de92 {"aliquot_tag": "ALQ_f8488f72", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.miRNA-Seq.T.hg38 C3N-02994 UCEC miRNA-Seq tumor CPT0248000009 cf841356-e0cc-4a71-a79d-e6c40871bd02_mirnaseq_gdc_realn.bam 166062289 BAM harmonized CPTAC3 9b01b34d-2113-47cc-9156-bdbd60e44eb2 054f4d757786917b74328f055f9084b4 {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.chimeric.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.chimeric.gdc_realn.bam 31093657 BAM chimeric harmonized CPTAC3 80ed7ad4-75ee-4173-a677-8ab34de9f8f9 3e40112defc8809cfd118465dbf1719e {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.chimeric.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.chimeric.gdc_realn.bam 135431156 BAM chimeric harmonized CPTAC3 f2cd45e9-e4ce-48bf-b389-71898a313717 ea93575658ef54a98a1f642d410d9e3e {"aliquot_tag": "ALQ_7f88d6d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.genomic.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.genomic.gdc_realn.bam 7747781352 BAM genomic harmonized CPTAC3 921d9da9-2dfd-4b7b-83a8-8e6a9beb904c 0539504e620b5c313e5360559d5d5431 {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.genomic.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.genomic.gdc_realn.bam 11804494214 BAM genomic harmonized CPTAC3 71c6e126-eaf0-4438-b885-7ab4f8d8b27b 319cec01ef6048ecc180b0c5f93fcaae {"aliquot_tag": "ALQ_7f88d6d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.S15_L005_R1.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R1_001.fastq.gz 3661868113 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 b995d56d-579a-4300-9ab0-fd334b1ca8a2 2bc863b00397937c5dc200d736ca3127 {"aliquot_tag": "ALQ_f8488f72", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.S15_L005_R2.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R2_001.fastq.gz 4190875867 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 dbc375a0-3b7e-4181-a849-6ee5d2d81f16 667935fdc3892fcec0eb5cb672223031 {"aliquot_tag": "ALQ_f8488f72", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.S86_R1.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R1_001.fastq.gz 5810227537 FASTQ S86_R1 submitted_unaligned CPTAC3 16a4040d-6cb9-4c99-898a-6a1ccaf44a52 2cbbf7f39dd08dc1e829a13d80ef63ad {"aliquot_tag": "ALQ_7f88d6d4", "sample": "S86", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.S86_R2.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R2_001.fastq.gz 5946996502 FASTQ S86_R2 submitted_unaligned CPTAC3 bb7242f9-3e20-4739-a2bd-3268133ff616 91b93323ba8d16da049ceb1cc50af508 {"aliquot_tag": "ALQ_7f88d6d4", "sample": "S86", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.transcriptome.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.transcriptome.gdc_realn.bam 10653217237 BAM transcriptome harmonized CPTAC3 1c06f00a-7990-489e-837e-b007070be51d 7264b1338f844d6b90ebb4f2a476065a {"aliquot_tag": "ALQ_f8488f72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.RNA-Seq.transcriptome.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.transcriptome.gdc_realn.bam 6493479917 BAM transcriptome harmonized CPTAC3 1f239cab-3a91-4316-927c-823ac7772386 66662c3826f4740d39fa815cbf19de49 {"aliquot_tag": "ALQ_7f88d6d4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.WGS.N C3N-02994 UCEC WGS blood_normal CPT0248020002 CPT0248020002.WholeGenome.RP-1303.bam 75446524146 BAM submitted_aligned CPTAC3 f20e2942-1f19-4d91-98e8-1d8ff73e92b3 90d3f2dd7ba79dfefe7ca13273acce96 {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02994.WGS.N.hg38 C3N-02994 UCEC WGS blood_normal CPT0248020002 817230ce-0900-4cca-b699-52f2934b6c94_wgs_gdc_realn.bam 109568450980 BAM harmonized CPTAC3 68065e5b-2b40-41a8-b04a-aee29df393b2 f9dc5cf6878ea1426b83b2266d73172f {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02994.WGS.T C3N-02994 UCEC WGS tumor CPT0248000006 CPT0248000006.WholeGenome.RP-1303.bam 59644262222 BAM submitted_aligned CPTAC3 51a451d9-2212-476d-852e-13825bae19a2 4bfcde5ed26d8468f4e8f9e998ba15b7 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.WGS.T.hg38 C3N-02994 UCEC WGS tumor CPT0248000006 6e080613-cb5b-47b4-a1cc-8fb789dd31da_wgs_gdc_realn.bam 87500423026 BAM harmonized CPTAC3 38bd52bf-81f7-48b4-87fc-1172415af99c 54b105d5d607ab076188d5c3582827a0 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.WXS.N C3N-02994 UCEC WXS blood_normal CPT0248020002 CPT0248020002.WholeExome.RP-1303.bam 23532961274 BAM submitted_aligned CPTAC3 8451f515-5f4d-495a-ba2e-719a9259f3d0 4b3f864856bdadc4c392e63b515aff22 {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02994.WXS.N.hg38 C3N-02994 UCEC WXS blood_normal CPT0248020002 817230ce-0900-4cca-b699-52f2934b6c94_wxs_gdc_realn.bam 31825877339 BAM harmonized CPTAC3 5461a238-4778-4bea-b005-ccd62f2a1459 4573a5b60490b1902652d76902467854 {"aliquot_tag": "ALQ_155a059a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-02994.WXS.T C3N-02994 UCEC WXS tumor CPT0248000006 CPT0248000006.WholeExome.RP-1303.bam 25292492968 BAM submitted_aligned CPTAC3 3f76a382-98a6-47a7-9af7-6e011526ac0b 5681cada21afba089136ae230e932f38 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02994.WXS.T.hg38 C3N-02994 UCEC WXS tumor CPT0248000006 6e080613-cb5b-47b4-a1cc-8fb789dd31da_wxs_gdc_realn.bam 35356118056 BAM harmonized CPTAC3 ad9b2102-5fc0-4641-9c45-a00f6ea48f71 200fcf4ee5e25b476e0efe8a880351c0 {"aliquot_tag": "ALQ_68f792e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02996.ANN_c487659e.RNA-Seq.chimeric.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.chimeric.gdc_realn.bam 396343179 BAM chimeric harmonized CPTAC3 a6a19b65-eee7-4ce6-bd2f-0aa6a2249a10 6e91f54a5402fd43e918898a5214cf14 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.ANN_c487659e.RNA-Seq.genomic.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.genomic.gdc_realn.bam 15045053170 BAM genomic harmonized CPTAC3 f7079272-e608-4297-ab8a-35b19db0ca62 7d15d844530eed89c5f39d5d15f01356 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.ANN_c487659e.RNA-Seq.S1_L005_R1.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R1_001.fastq.gz 5528271075 FASTQ S1_L005_R1 submitted_unaligned CPTAC3 7dd43710-d433-4d6d-a13f-00d1b502e41c d0a3efef5b9ccfad8a7aa58d6972fca5 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.ANN_c487659e.RNA-Seq.S1_L005_R2.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R2_001.fastq.gz 6280611223 FASTQ S1_L005_R2 submitted_unaligned CPTAC3 0f5dcdca-0bd9-4440-8799-ed1e20b15054 055b437704d97a7ad3c6d2872457c419 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.ANN_c487659e.RNA-Seq.transcriptome.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.transcriptome.gdc_realn.bam 13046097029 BAM transcriptome harmonized CPTAC3 3b2969fc-6ab7-4f49-ba4e-c4a83442c212 af87157d94e6f9b939baf9841e5d59f7 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_3d49bdc1.WXS.T C3N-02996 PDA WXS tumor CPT0187820033 CPT0187820033.WholeExome.RP-1303.bam 37486064868 BAM submitted_aligned CPTAC3 1af7be40-3009-47b4-81e0-63e1b75075e5 183d3999101070ee576cff2b4a0f2c5e {"aliquot_tag": "DUP_3d49bdc1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_3d49bdc1.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820033 6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM harmonized CPTAC3 ed5bb7bd-bedf-4585-9849-16526aae512a b3ff7e7c8215f8c438647c99389abe15 {"aliquot_tag": "DUP_3d49bdc1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_4a4e8d57.WXS.T C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM submitted_aligned CPTAC3 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_4a4e8d57.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM harmonized CPTAC3 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_704360fe.RNA-Seq.chimeric.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.chimeric.gdc_realn.bam 29257812 BAM chimeric harmonized CPTAC3 74b6605f-05f5-4a0e-8f44-d17fdb359651 32c31955a5511bd51b674e0914f48ccc {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_704360fe.RNA-Seq.genomic.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.genomic.gdc_realn.bam 10586844730 BAM genomic harmonized CPTAC3 9862cc22-3c6f-4e16-a2e2-df1bb0cba663 822c4910e1ecccd31f020e31f13403a1 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_704360fe.RNA-Seq.S18_L006_R1.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R1_001.fastq.gz 3979442144 FASTQ S18_L006_R1 submitted_unaligned CPTAC3 35391da6-589f-420c-80c5-de947f7a2045 80166282b9565b5861e50c3c280c02c0 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_704360fe.RNA-Seq.S18_L006_R2.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R2_001.fastq.gz 4133641460 FASTQ S18_L006_R2 submitted_unaligned CPTAC3 1dbfec2a-e020-443f-879e-0fe2c13198e3 ba2be5e6e67230ceb72e862391025a90 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_704360fe.RNA-Seq.transcriptome.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.transcriptome.gdc_realn.bam 10304014062 BAM transcriptome harmonized CPTAC3 fdc1b803-c2bc-48ea-93f8-25724399bb0e 1ecf9b48eb6cdb659712300ab75e249e {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_a32d2862.WXS.T C3N-02996 PDA WXS tumor CPT0187820034 CPT0187820034.WholeExome.RP-1303.bam 23045307994 BAM submitted_aligned CPTAC3 d29aebf7-b7ff-4241-a3e6-bb0f3dfc54eb 6db4755450dddbbef51206f5dec25926 {"aliquot_tag": "DUP_a32d2862", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_a32d2862.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820034 f33b3ac6-a22a-4e63-8480-429e1c2d27ba_wxs_gdc_realn.bam 31875468805 BAM harmonized CPTAC3 b8fc5c89-2d65-40ab-a969-62db1d608896 fb77d5d8f6ec9910a07fe816d6fba9ed {"aliquot_tag": "DUP_a32d2862", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_a98351e4.WXS.N C3N-02996 PDA WXS blood_normal CPT0187870002 CPT0187870002.WholeExome.RP-1303.bam 25792249388 BAM submitted_aligned CPTAC3 1d2e0ab5-9afb-4531-8965-42ef2dc880e9 668f43d158647e2e1aacd1b5f8f8b353 {"aliquot_tag": "DUP_a98351e4", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02996.DUP_a98351e4.WXS.N.hg38 C3N-02996 PDA WXS blood_normal CPT0187870002 73505858-157d-4d4f-8e84-359a6344de48_wxs_gdc_realn.bam 35792510687 BAM harmonized CPTAC3 8c1b0bfa-edfc-4d5f-a009-42e5c796dd3f 05ed0c24e0850b51e6d30d74a5d1f74f {"aliquot_tag": "DUP_a98351e4", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02996.DUP_e0fc7d6f.RNA-Seq.chimeric.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.chimeric.gdc_realn.bam 93378285 BAM chimeric harmonized CPTAC3 ac669cdf-37ad-480f-bc7d-2f53b096276c e8f98efd69e86788020a1e5c5b7eb679 {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_e0fc7d6f.RNA-Seq.genomic.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.genomic.gdc_realn.bam 11340229054 BAM genomic harmonized CPTAC3 14376aa2-e619-4e47-89f7-5c8b19603978 572df67fe41fded4046f89c90345b236 {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_e0fc7d6f.RNA-Seq.S6_L002_R1.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 3898361037 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 a4d065fa-bb51-4c1d-bb63-6fba6e4bef30 fc2adf292e08f4883c7457282455636d {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_e0fc7d6f.RNA-Seq.S6_L002_R2.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4472756687 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 7601edaa-4619-49bc-8bd5-af3eae2bee25 99c6130bb8857ca06f46ca490dea4a7b {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02996.DUP_e0fc7d6f.RNA-Seq.transcriptome.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.transcriptome.gdc_realn.bam 10780795094 BAM transcriptome harmonized CPTAC3 9fc9f7d7-fc45-4ebc-b87b-a06ee1691a7b 4c26bd83f53a21f479df51f943648d1e {"aliquot_tag": "DUP_e0fc7d6f", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-02997.DUP_6ee29421.MethArray.Green.T C3N-02997 PDA Methylation_Array tumor CPT0187880023 203561450023_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 04eb4f3f-1ac9-49b7-beac-ebc4364957c2 e22f79cd5400d6dac6f0c00be930cb3b {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_6ee29421.MethArray.Red.T C3N-02997 PDA Methylation_Array tumor CPT0187880023 203561450023_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 4e98b347-eed9-4724-8824-d32228a344f2 58520673375a163f28fdf8461d115f8f {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_6ee29421.WGS.T C3N-02997 PDA WGS tumor CPT0187880023 CPT0187880023.WholeGenome.RP-1303.bam 64503080897 BAM submitted_aligned CPTAC3 d8ed3017-c630-414c-8193-b31014ef7892 02d78aeff64588b7cc3afd9ea1bdea26 {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_6ee29421.WGS.T.hg38 C3N-02997 PDA WGS tumor CPT0187880023 50dedea3-c620-45ad-b9e5-bbb225fc23a2_wgs_gdc_realn.bam 93086644191 BAM harmonized CPTAC3 e1840a43-7505-415f-9732-41110c300215 c61ba0fe04a0f989f269882490387478 {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_6ee29421.WXS.T C3N-02997 PDA WXS tumor CPT0187880023 CPT0187880023.WholeExome.RP-1303.bam 68430515342 BAM submitted_aligned CPTAC3 e2f3e9a7-4c76-491f-a733-9513f00e5b4a d5edc2c03b97ffa74d87c168a71a6a59 {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_6ee29421.WXS.T.hg38 C3N-02997 PDA WXS tumor CPT0187880023 50dedea3-c620-45ad-b9e5-bbb225fc23a2_wxs_gdc_realn.bam 94310236916 BAM harmonized CPTAC3 d74a9a1a-62a2-4b30-b0d0-1447b9021fd2 dc7e708549f217d56c85dc598b54bf8d {"aliquot_tag": "DUP_6ee29421", "aliquot_annotation": "Duplicate item: PDA Pilot - core-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_8e377d3f.WGS.T C3N-02997 PDA WGS tumor CPT0187880029 CPT0187880029.WholeGenome.RP-1303.bam 128295224132 BAM submitted_aligned CPTAC3 0873ddcb-6084-4e83-8470-077e1dbeda44 1a91beb18ab8749a3d4828d55d3d624c {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_8e377d3f.WGS.T.hg38 C3N-02997 PDA WGS tumor CPT0187880029 f4651bfd-45a2-4d90-a791-3a6ea57fac74_wgs_gdc_realn.bam 188158529926 BAM harmonized CPTAC3 69501e96-93b0-4fe3-8232-1ff84a129741 47ac8485b07656e81c1c4597563db0e9 {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_8e377d3f.WXS.T C3N-02997 PDA WXS tumor CPT0187880029 CPT0187880029.WholeExome.RP-1303.bam 43567205475 BAM submitted_aligned CPTAC3 7b4a54d0-a1dc-4327-98a5-b52ca16d1d41 703c881c2d3f542b5f6ccbe40869ab1e {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.DUP_8e377d3f.WXS.T.hg38 C3N-02997 PDA WXS tumor CPT0187880029 f4651bfd-45a2-4d90-a791-3a6ea57fac74_wxs_gdc_realn.bam 61514647521 BAM harmonized CPTAC3 33fbb651-d2ac-491e-9e61-bdaae9adc2db ef27c289f122ddbc50f79dc493243522 {"aliquot_tag": "DUP_8e377d3f", "aliquot_annotation": "Duplicate item: PDA Pilot - bulk-derived DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.miRNA-Seq.S4_L002_R1.T C3N-02997 PDA miRNA-Seq tumor CPT0187880020 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L002_R1_001.unaln.bam 188904182 BAM S4_L002_R1 submitted_unaligned CPTAC3 5fb3c51f-52b9-41eb-b307-2369ec7c2914 55bd82edcadd64481ceda6ba757420a6 {"aliquot_tag": "ALQ_f7ebc59b", "sample": "S4", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.miRNA-Seq.T.hg38 C3N-02997 PDA miRNA-Seq tumor CPT0187880020 1eeedacb-6e4e-47fd-a701-7a753afdf83f_mirnaseq_gdc_realn.bam 211693903 BAM harmonized CPTAC3 80dbe77f-da51-46d5-b822-183291d01611 a8fd99ab8139c3f8ea4450770325b3a1 {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.RNA-Seq.chimeric.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.chimeric.gdc_realn.bam 23887870 BAM chimeric harmonized CPTAC3 d8d6afa0-0afa-4e4a-887e-2f295692eee7 355f637b63cdb67c7df1ff59460be859 {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.RNA-Seq.genomic.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.genomic.gdc_realn.bam 11076419875 BAM genomic harmonized CPTAC3 0d5f1a76-9ddc-4535-a3ca-0c357e04925d 29914cbcf93ad951bd753f0b681a83ae {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.RNA-Seq.S8_L002_R1.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R1_001.fastq.gz 3834475097 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 d7462092-1df0-412e-b272-60f9e0c9799a 031cac9d31b31e2528eef0e263d5679b {"aliquot_tag": "ALQ_f7ebc59b", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.RNA-Seq.S8_L002_R2.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R2_001.fastq.gz 4051846905 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 b150cdea-b5b2-4335-a26b-8e94a257c0ca 8f8e320d58655e5fd582d56058a23e6f {"aliquot_tag": "ALQ_f7ebc59b", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.RNA-Seq.transcriptome.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.transcriptome.gdc_realn.bam 9290512137 BAM transcriptome harmonized CPTAC3 d5f0444f-fbc3-4d1f-a806-95b421164ec4 5704a3fb0fb4e849c8a88e696a6000da {"aliquot_tag": "ALQ_f7ebc59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02997.WGS.N C3N-02997 PDA WGS blood_normal CPT0187920002 CPT0187920002.WholeGenome.RP-1303.bam 64560886943 BAM submitted_aligned CPTAC3 570d4435-e312-45fe-8488-8f9948aee7df ea2427f42085a60b4d57ebf20c1b1ec7 {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02997.WGS.N.hg38 C3N-02997 PDA WGS blood_normal CPT0187920002 ec85c30a-c8b0-4610-944a-85e223670cd6_wgs_gdc_realn.bam 92624705727 BAM harmonized CPTAC3 421461bc-6177-4cbb-a9cc-c98cf68b91aa 57c5c2672941fa037759326bb803fea6 {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02997.WXS.N C3N-02997 PDA WXS blood_normal CPT0187920002 CPT0187920002.WholeExome.RP-1303.bam 24446342493 BAM submitted_aligned CPTAC3 1252179f-34e9-4028-bead-bd41a38300b5 70e850f0346ef024b9b3e844a36a0abd {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02997.WXS.N.hg38 C3N-02997 PDA WXS blood_normal CPT0187920002 ec85c30a-c8b0-4610-944a-85e223670cd6_wxs_gdc_realn.bam 33307097960 BAM harmonized CPTAC3 d85499af-013d-4afd-9be4-263b92a2f996 75e74ef41a1b76496bf0f84f7ea53219 {"aliquot_tag": "ALQ_aa3f0d31", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02997.WXS.T C3N-02997 PDA WXS tumor CPT0187880025 CPT0187880025.WholeExome.RP-1303.bam 52630614915 BAM submitted_aligned CPTAC3 8648eac7-7167-49e3-bf28-c2c01f697f50 53bff600ca0127553ad2a8f43ae9a479 {"aliquot_tag": "ALQ_87813114", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.MethArray.Green.T C3N-02998 PDA Methylation_Array tumor CPT0187930008 203561620077_R01C01_Grn.idat 13676214 IDAT Green NA CPTAC3 a5983d0a-bf2a-40b1-94ec-790fc181ebb1 504df97e34fa8b23ed02197a7ceaa4a3 {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.MethArray.Red.T C3N-02998 PDA Methylation_Array tumor CPT0187930008 203561620077_R01C01_Red.idat 13676214 IDAT Red NA CPTAC3 1f0628ad-2055-4073-9466-e8e1fdde2588 9085908c1fbd255be1ac6072219e4045 {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.miRNA-Seq.S149_L007_R1.T C3N-02998 PDA miRNA-Seq tumor CPT0187930011 190828_UNC32-K00270_0200_BH7GVJBBXY_ATTCCT_S149_L007_R1_001.unaln.bam 193665924 BAM S149_L007_R1 submitted_unaligned CPTAC3 4a74c685-8a11-4a7c-ba1e-084219741373 fb846c4cf83b747e087d0fec5db564bd {"aliquot_tag": "ALQ_174d447a", "sample": "S149", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.miRNA-Seq.T.hg38 C3N-02998 PDA miRNA-Seq tumor CPT0187930011 4b55f44e-bf95-4359-854d-0e0fdf888c83_mirnaseq_gdc_realn.bam 212664658 BAM harmonized CPTAC3 d0e5abbc-3db2-495b-ba33-033245459c2b 44bc41597277fd2b7a311f2e4e3c7a41 {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.RNA-Seq.chimeric.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.chimeric.gdc_realn.bam 34903971 BAM chimeric harmonized CPTAC3 405c51d4-5c37-406b-858d-f7348dcfc295 06f91aca94d560ba696742c109c2c6d9 {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.RNA-Seq.genomic.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.genomic.gdc_realn.bam 8124643414 BAM genomic harmonized CPTAC3 a593751b-30d0-4211-ad2c-7bb0c9d4b26e e3aeb231c5250d4d7950ddeb62e5c5ff {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.RNA-Seq.S12_L003_R1.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R1_001.fastq.gz 3810750341 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 bb3f5976-cf4d-48ff-9c8d-114bce4f2979 ce7970dbcdcf5b410043e4ec9a2dbdf1 {"aliquot_tag": "ALQ_174d447a", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.RNA-Seq.S12_L003_R2.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R2_001.fastq.gz 4118885680 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 9b05c168-9ae7-4fe1-9edc-1fb442ee2b2c 7ba57736074d55fb014d5d21ffd379d7 {"aliquot_tag": "ALQ_174d447a", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.RNA-Seq.transcriptome.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.transcriptome.gdc_realn.bam 10615689387 BAM transcriptome harmonized CPTAC3 8ce05acc-b55a-49d6-93fe-73af49c25b74 20f7707fafbdae58263261b315cb1e74 {"aliquot_tag": "ALQ_174d447a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.WGS.N C3N-02998 PDA WGS blood_normal CPT0187950002 CPT0187950002.WholeGenome.RP-1303.bam 60347374885 BAM submitted_aligned CPTAC3 05c063fd-8139-441f-8fff-255113106d35 2accd548c175e3ef698e672711b1d450 {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02998.WGS.N.hg38 C3N-02998 PDA WGS blood_normal CPT0187950002 a04c1a55-7f29-4e6f-96a4-343dcec2a11d_wgs_gdc_realn.bam 86700302599 BAM harmonized CPTAC3 7510d57b-d023-4872-9d5b-71123e9dcc3c e5caeecaf2df0a13e1c6fc3df5050ed9 {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02998.WGS.T C3N-02998 PDA WGS tumor CPT0187930008 CPT0187930008.WholeGenome.RP-1303.bam 132258666810 BAM submitted_aligned CPTAC3 01f606f5-50ec-4542-ba97-5792d94a045c 54c584dd67f3ebcbd4e7e7cba35d7e3d {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.WGS.T.hg38 C3N-02998 PDA WGS tumor CPT0187930008 42b516fb-b82e-44be-a6ec-57f4b2b14b2a_wgs_gdc_realn.bam 189886011380 BAM harmonized CPTAC3 0dd8d3b2-fc86-43c2-8fe6-c1d3873d1643 0090d373483354daaeb601ddea40b5dc {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.WXS.N C3N-02998 PDA WXS blood_normal CPT0187950002 CPT0187950002.WholeExome.RP-1303.bam 25539712620 BAM submitted_aligned CPTAC3 e0edb06e-06c4-43b9-a2e5-0a744eec51c5 dd2f32c078b89f7af865bc6477263cd6 {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02998.WXS.N.hg38 C3N-02998 PDA WXS blood_normal CPT0187950002 a04c1a55-7f29-4e6f-96a4-343dcec2a11d_wxs_gdc_realn.bam 34793270866 BAM harmonized CPTAC3 d39404ab-d27e-4cc7-8390-3333fdff530f 26df83848d27a9104ec50b136d9b339f {"aliquot_tag": "ALQ_181fd121", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-02998.WXS.T C3N-02998 PDA WXS tumor CPT0187930008 CPT0187930008.WholeExome.RP-1303.bam 54831179770 BAM submitted_aligned CPTAC3 47999c48-c009-4177-bd88-d58693ec3d6c 9bb3725691d0995af3b7680dd5da26cf {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02998.WXS.T.hg38 C3N-02998 PDA WXS tumor CPT0187930008 42b516fb-b82e-44be-a6ec-57f4b2b14b2a_wxs_gdc_realn.bam 75572581571 BAM harmonized CPTAC3 eaa97ae3-f572-4484-8463-aae4d564c899 423efbd4befdf2383e102207646e7312 {"aliquot_tag": "ALQ_778acd9f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.miRNA-Seq.S16_L004_R1.T C3N-03000 PDA miRNA-Seq tumor CPT0226490010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTCAGA_S16_L004_R1_001.unaln.bam 194981114 BAM S16_L004_R1 submitted_unaligned CPTAC3 89fca0d1-10af-4ec3-bb4e-5905fb9b0ded 9e762b76379d591b2588a6d6fec2070e {"aliquot_tag": "ALQ_985e542a", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.miRNA-Seq.T.hg38 C3N-03000 PDA miRNA-Seq tumor CPT0226490010 7272726f-32f1-4225-ae3c-73c022a8b785_mirnaseq_gdc_realn.bam 222829273 BAM harmonized CPTAC3 275da72e-dfa7-4a39-aec6-ff40785022d2 5345aad816c9ae25dd99ea9cc9d3faef {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.RNA-Seq.chimeric.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.chimeric.gdc_realn.bam 33155620 BAM chimeric harmonized CPTAC3 218e3540-cf77-4112-ac1c-a0cba76e6c74 533513cbe215ee21c52bd5ab510fbdfd {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.RNA-Seq.genomic.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.genomic.gdc_realn.bam 8416966449 BAM genomic harmonized CPTAC3 df551248-daa8-4f7c-b46e-2c2f4601dcc4 b93bf371d181e408402735c9d91b7b87 {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.RNA-Seq.S5_L002_R1.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R1_001.fastq.gz 3869639482 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 54a81289-1137-4f78-b8bf-9ecc81dec020 a1f0aa2baee1ef7b8ada7925f9c9aae0 {"aliquot_tag": "ALQ_985e542a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.RNA-Seq.S5_L002_R2.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R2_001.fastq.gz 4496572036 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 724184e1-df7b-45a8-a54a-3e06e70cdfac cb65fdfde0143dfc302fcbced1f5bdba {"aliquot_tag": "ALQ_985e542a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.RNA-Seq.transcriptome.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.transcriptome.gdc_realn.bam 11096125265 BAM transcriptome harmonized CPTAC3 8afcb85d-d0fb-49f2-ad56-288eab58e3a2 91caa51d0d568d44e5e6c8d1c104fa7c {"aliquot_tag": "ALQ_985e542a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.WGS.N C3N-03000 PDA WGS blood_normal CPT0226510002 CPT0226510002.WholeGenome.RP-1303.bam 60250350153 BAM submitted_aligned CPTAC3 582cb241-469a-45ae-b8b2-720f4ea0876e 331543ae1821180f65a5a3cb532cf4ef {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03000.WGS.N.hg38 C3N-03000 PDA WGS blood_normal CPT0226510002 7641e92d-11b2-4a00-a7df-73582f959c5f_wgs_gdc_realn.bam 89957250752 BAM harmonized CPTAC3 89f61f41-6102-42d4-9f39-49c9ee23caf6 315275592128e9bab1b18439d54ea64c {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03000.WGS.T C3N-03000 PDA WGS tumor CPT0226490006 CPT0226490006.WholeGenome.RP-1303.bam 140087147185 BAM submitted_aligned CPTAC3 b363b042-5723-4672-a011-0b8e8cb3f703 c812b24c7914a5783521e7af4cb26a73 {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.WGS.T.hg38 C3N-03000 PDA WGS tumor CPT0226490006 804331e1-1baf-40fa-bb2c-bd355ef62f54_wgs_gdc_realn.bam 209381222415 BAM harmonized CPTAC3 3a761f9d-6bbe-42f1-a15f-3fd40f1843ce 7dacbfada69ce8c184f501fbe5981f2c {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.WXS.N C3N-03000 PDA WXS blood_normal CPT0226510002 CPT0226510002.WholeExome.RP-1303.bam 26917740859 BAM submitted_aligned CPTAC3 ae527307-76a2-45aa-94ac-459523836ea6 4b4459b60d45d9424d70de9e2eaa7c96 {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03000.WXS.N.hg38 C3N-03000 PDA WXS blood_normal CPT0226510002 7641e92d-11b2-4a00-a7df-73582f959c5f_wxs_gdc_realn.bam 36787510165 BAM harmonized CPTAC3 6108bfea-9c5f-421a-8d73-41760132c927 1fe055ae6d00f6f1c656b2fbdab19170 {"aliquot_tag": "ALQ_94679c23", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03000.WXS.T C3N-03000 PDA WXS tumor CPT0226490006 CPT0226490006.WholeExome.RP-1303.bam 23747704186 BAM submitted_aligned CPTAC3 eca7ad89-574d-4c0b-bb59-ace9506ac21a 255f3ec9cb6f8f4958d288ea95eea504 {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03000.WXS.T.hg38 C3N-03000 PDA WXS tumor CPT0226490006 804331e1-1baf-40fa-bb2c-bd355ef62f54_wxs_gdc_realn.bam 32714801429 BAM harmonized CPTAC3 2ad277cc-2d7f-4d18-a7d6-d110b7cc7b01 24a55c85ea603e11fc342ddffb52fecb {"aliquot_tag": "ALQ_6826c05e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03001.MethArray.Green.T C3N-03001 GBM Methylation_Array tumor CPT0248230006 204367470132_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5f7be741-0480-4521-87ed-f519c24745b9 8026394916dc010d06ab2dbc5129699d {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.MethArray.Red.T C3N-03001 GBM Methylation_Array tumor CPT0248230006 204367470132_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 adc9401c-f592-47de-a534-3ca99f3cf183 feac0b28926175b4065ead0396f744f2 {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.miRNA-Seq.S35_L002_R1.T C3N-03001 GBM miRNA-Seq tumor CPT0248230009 200403_UNC31-K00269_0274_AHCF7GBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 220154090 BAM S35_L002_R1 submitted_unaligned CPTAC3 ab9934f5-2e2f-49a7-989f-fc5ce90b0ad2 59f997c0994657e8e603673b0562817e {"aliquot_tag": "ALQ_f22054a9", "sample": "S35", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.miRNA-Seq.T.hg38 C3N-03001 GBM miRNA-Seq tumor CPT0248230009 f01b3ee3-eb0d-4faf-9431-51078e0bde67_mirnaseq_gdc_realn.bam 246572830 BAM harmonized CPTAC3 24b0e422-f608-4908-a1e5-161e44cb2cad 655f8017e3ff204ada57b6197f581e27 {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.RNA-Seq.chimeric.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.chimeric.gdc_realn.bam 198690393 BAM chimeric harmonized CPTAC3 3bcd1232-38fa-4196-9e2d-c8e02e68fd2e f458af4c2a69eae2f7d554a969d2a323 {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.RNA-Seq.genomic.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.genomic.gdc_realn.bam 9160804913 BAM genomic harmonized CPTAC3 1b81aa50-f275-4420-bacc-42df6d331f64 a8d5c2b5be48a1b483509fd1dcbff56f {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.RNA-Seq.S3_L001_R1.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 3761960687 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 1b916065-70cc-431f-923f-2e2305f9491b 132eec228d43b24a9fb5092a6d019865 {"aliquot_tag": "ALQ_f22054a9", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.RNA-Seq.S3_L001_R2.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d 4f47f1399b812130c239f1b39deb5fab {"aliquot_tag": "ALQ_f22054a9", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.RNA-Seq.transcriptome.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.transcriptome.gdc_realn.bam 7901986050 BAM transcriptome harmonized CPTAC3 cc19d3f2-13bf-475c-a2aa-432d3d0f1e04 6373a829540f485a2bba0d8b3c95164a {"aliquot_tag": "ALQ_f22054a9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.WGS.N C3N-03001 GBM WGS blood_normal CPT0248310002 CPT0248310002.WholeGenome.RP-2158.bam 25352497557 BAM submitted_aligned CPTAC3 680cef4f-4ec7-41c7-91cf-507eb20e1dc9 248cabe88345469bf9bd013dee2ce580 {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03001.WGS.N.hg38 C3N-03001 GBM WGS blood_normal CPT0248310002 b1328107-60b3-4caa-9aeb-4a20ff059f1b_wgs_gdc_realn.bam 74657515788 BAM harmonized CPTAC3 d094a1b6-d186-450d-8cd9-4581a517d22b 5fcb4f8bdc5921fadbae059e670b309c {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03001.WGS.T C3N-03001 GBM WGS tumor CPT0248230006 CPT0248230006.WholeGenome.RP-2158.bam 20492866379 BAM submitted_aligned CPTAC3 6006e857-617d-4e76-b433-d456e450cc8c aa598b87a110af43b6fa8dff2fdca44b {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.WGS.T.hg38 C3N-03001 GBM WGS tumor CPT0248230006 48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wgs_gdc_realn.bam 60902173210 BAM harmonized CPTAC3 08172ae7-bf7e-4d27-bd8e-4154e1445f55 6733e5e47581da3229b1f616d5ec8cae {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.WXS.N C3N-03001 GBM WXS blood_normal CPT0248310002 CPT0248310002.WholeExome.RP-1303.bam 20959866756 BAM submitted_aligned CPTAC3 72bcb59e-8385-49e3-91c7-52c7e2cd53e9 0d5c9a9e2cdd83bb58fc9664287255f6 {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03001.WXS.N.hg38 C3N-03001 GBM WXS blood_normal CPT0248310002 b1328107-60b3-4caa-9aeb-4a20ff059f1b_wxs_gdc_realn.bam 28582690598 BAM harmonized CPTAC3 6e69c87c-2a68-409e-832e-ea3516ed05d0 0c73b4586e4f93aaeb656b3e29f9c69d {"aliquot_tag": "ALQ_d46e0de4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03001.WXS.T C3N-03001 GBM WXS tumor CPT0248230006 CPT0248230006.WholeExome.RP-1303.bam 18881735796 BAM submitted_aligned CPTAC3 2be1cd42-fb56-4660-93fd-8b16cf116f9e 104a581d25eedcf8d83d892e9c84ae93 {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03001.WXS.T.hg38 C3N-03001 GBM WXS tumor CPT0248230006 48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wxs_gdc_realn.bam 26465631028 BAM harmonized CPTAC3 8e07bc8c-5075-4347-866e-921ec2ff009f 5c315b6a0d281f91b355142d1d6b9c9a {"aliquot_tag": "ALQ_629f4938", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.MethArray.Green.T C3N-03003 GBM Methylation_Array tumor CPT0224960006 204372030106_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 82c00b30-c1fb-4d7f-b62d-b1e842ca0ef1 d0ae814e489fd8b398645c8248e617bd {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.MethArray.Red.T C3N-03003 GBM Methylation_Array tumor CPT0224960006 204372030106_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 df6da8b9-723f-4194-b38e-9ad587d0a819 4ba04447ab9435ef5346518a0395468d {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.miRNA-Seq.S44_L002_R1.T C3N-03003 GBM miRNA-Seq tumor CPT0224960009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 242262802 BAM S44_L002_R1 submitted_unaligned CPTAC3 77dd96e1-b665-4e7a-b3cb-b336a6907184 0d8fed3e0aa24bc83dbd17fce26efa96 {"aliquot_tag": "ALQ_51c848e9", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.miRNA-Seq.T.hg38 C3N-03003 GBM miRNA-Seq tumor CPT0224960009 29d318a8-fcc5-430d-a734-e0fd1a07c227_mirnaseq_gdc_realn.bam 266042176 BAM harmonized CPTAC3 54d4483f-fa2a-46b0-b9ba-2cc022056c7e f89f2419744618c4816ddb50e88b866b {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.RNA-Seq.chimeric.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.chimeric.gdc_realn.bam 28223096 BAM chimeric harmonized CPTAC3 382cc3a5-3a05-40df-9148-f0e6709c6acd a25bfd4d6043c52d96e760b2c65de30d {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.RNA-Seq.genomic.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.genomic.gdc_realn.bam 7300753571 BAM genomic harmonized CPTAC3 cdc0ec94-b498-4a4c-9d82-7473738d31be aa9ae881d871d4bd6f3a87c860a33f1e {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.RNA-Seq.S12_L003_R1.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 c465924b-72b1-4df5-858a-bdfdc8c0f484 29e93e21fe30da7ea17daf6e76184148 {"aliquot_tag": "ALQ_51c848e9", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.RNA-Seq.S12_L003_R2.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 b68baa4c-eac8-4981-8f81-936605755b5d 9b878312a5c812b1811c8bfe4519a79c {"aliquot_tag": "ALQ_51c848e9", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.RNA-Seq.transcriptome.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.transcriptome.gdc_realn.bam 7456818471 BAM transcriptome harmonized CPTAC3 f4e7adf8-4dc6-45a7-b7bd-0f6ca0452964 b89882e9dae70de20ebe48526dec8b16 {"aliquot_tag": "ALQ_51c848e9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.WGS.N C3N-03003 GBM WGS blood_normal CPT0225800002 CPT0225800002.WholeGenome.RP-2158.bam 21861962263 BAM submitted_aligned CPTAC3 afaa9fdc-4de9-4cc5-9cfb-9d5203ce917d 3386854f00785cd9febe25f4129d9b9c {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03003.WGS.N.hg38 C3N-03003 GBM WGS blood_normal CPT0225800002 201dfe54-d739-488d-9e80-1ced195f0d9b_wgs_gdc_realn.bam 66348324743 BAM harmonized CPTAC3 daaee450-05a7-4451-a8bc-466d4cc6a324 229fb9b7f24b01fcf83b57ed93d99dc7 {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03003.WGS.T C3N-03003 GBM WGS tumor CPT0224960006 CPT0224960006.WholeGenome.RP-2158.bam 21329109644 BAM submitted_aligned CPTAC3 8f9259aa-8bab-4474-a691-dee8dad78929 222b2e704d7876217d88d8681498942c {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.WGS.T.hg38 C3N-03003 GBM WGS tumor CPT0224960006 0aca7784-683e-4437-b212-755d450109a4_wgs_gdc_realn.bam 59786107963 BAM harmonized CPTAC3 1b3e7ab1-5148-4ffa-bc1a-fd0224d0ab94 ce8e85a07b183fa7349ffac6e8ca9ba4 {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.WXS.N C3N-03003 GBM WXS blood_normal CPT0225800002 CPT0225800002.WholeExome.RP-1303.bam 26282388701 BAM submitted_aligned CPTAC3 c4593faf-c37d-4df9-96a5-54b179acbae5 8a88dda550d303fb80a7a41dc98a846d {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03003.WXS.N.hg38 C3N-03003 GBM WXS blood_normal CPT0225800002 201dfe54-d739-488d-9e80-1ced195f0d9b_wxs_gdc_realn.bam 36035172361 BAM harmonized CPTAC3 e5df19e6-aad5-4a50-a453-b0d21278ea73 38b162929b8313ab73fef16391a95c23 {"aliquot_tag": "ALQ_2471bcd0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03003.WXS.T C3N-03003 GBM WXS tumor CPT0224960006 CPT0224960006.WholeExome.RP-1303.bam 23932320080 BAM submitted_aligned CPTAC3 52530a4d-7ae0-4fa0-b4a4-a0a9667a4878 7584e0cee2f96d5a869d2030c46e7a58 {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03003.WXS.T.hg38 C3N-03003 GBM WXS tumor CPT0224960006 0aca7784-683e-4437-b212-755d450109a4_wxs_gdc_realn.bam 33401908422 BAM harmonized CPTAC3 14918c16-a4fb-48c0-896b-6f09dbdaae00 89fb3a72754101a6d0763df19b4a4d3e {"aliquot_tag": "ALQ_c1775578", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.MethArray.Green.T C3N-03005 UCEC Methylation_Array tumor CPT0247940006 203561450073_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1887d283-2f63-4ad6-b1de-2aa4a821ceac d54cfc5c83d9052405dd9132e15787ce {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.MethArray.Red.T C3N-03005 UCEC Methylation_Array tumor CPT0247940006 203561450073_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 e5caecbf-010c-4977-8534-6911d7450609 45723368e2050c8948c9f5555c909738 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.miRNA-Seq.S7_L001_R1.T C3N-03005 UCEC miRNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGATC_S7_L001_R1_001.unaln.bam 221844926 BAM S7_L001_R1 submitted_unaligned CPTAC3 2551cf95-ff28-4726-ac0c-9821a404d9bc f1374f8930c0f3be7d62ffe604ceaed8 {"aliquot_tag": "ALQ_dc8f0893", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.miRNA-Seq.T.hg38 C3N-03005 UCEC miRNA-Seq tumor CPT0247940009 8d630c1c-64dd-4e19-8f55-4270c464729d_mirnaseq_gdc_realn.bam 249197684 BAM harmonized CPTAC3 64261df7-c073-4396-80ba-8db76c0838fd 35b8c668043d2b9a200f9af354b69ccc {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.chimeric.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.chimeric.gdc_realn.bam 32561294 BAM chimeric harmonized CPTAC3 6d6c8fcc-5fb4-4332-acfb-4844f5e16c6d 5d6ddd5e229c51c3f3df878d83615fc8 {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.chimeric.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.chimeric.gdc_realn.bam 225607764 BAM chimeric harmonized CPTAC3 9cff33db-397b-48fa-91be-b2dc16fa6b1f 46cb8f1a8425d2bc298503a5b4df9cda {"aliquot_tag": "ALQ_83dcf71a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.genomic.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.genomic.gdc_realn.bam 8149412697 BAM genomic harmonized CPTAC3 0b95ad44-5943-4e69-b0a6-108e72f6a6e9 97f0a7dbf17dd7356a49ad527b658d18 {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.genomic.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.genomic.gdc_realn.bam 8418364202 BAM genomic harmonized CPTAC3 bb9d8cb6-9909-443e-9526-b37e642b2c3c 695a30a0949af54c9eef5c891ecf8b7f {"aliquot_tag": "ALQ_83dcf71a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.S18_L005_R1.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R1_001.fastq.gz 3900170966 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac 350943c4acec4f0e2ddb9baef388dce8 {"aliquot_tag": "ALQ_dc8f0893", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.S18_L005_R2.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R2_001.fastq.gz 4267444972 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 660d46c1-49bb-4bed-9382-5279c22c13f8 5c1a55a1cd0d5e2578c9152b5f41ded3 {"aliquot_tag": "ALQ_dc8f0893", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.S76_R1.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R1_001.fastq.gz 5615640760 FASTQ S76_R1 submitted_unaligned CPTAC3 2d47901f-2b7d-4329-9061-b3fda249ebde feef6a77fb3f6d9c5f17b8cf16aeeb1c {"aliquot_tag": "ALQ_83dcf71a", "sample": "S76", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.S76_R2.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R2_001.fastq.gz 5783374916 FASTQ S76_R2 submitted_unaligned CPTAC3 e97b3e53-a357-4ca5-ae25-325026a707e6 c78ff111ca289d0493d619bbaf08717f {"aliquot_tag": "ALQ_83dcf71a", "sample": "S76", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.transcriptome.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.transcriptome.gdc_realn.bam 10965349086 BAM transcriptome harmonized CPTAC3 1ee55a5c-1259-46c0-9a1f-8560a4c3ec14 4cdae2181d46dd76a4f3b43b12fb3335 {"aliquot_tag": "ALQ_dc8f0893", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.RNA-Seq.transcriptome.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.transcriptome.gdc_realn.bam 3478357843 BAM transcriptome harmonized CPTAC3 ce365184-e4e3-4bf4-9a57-6e8e54e1e63a 0be6cc1c5d52844939c5480aa93cdcb1 {"aliquot_tag": "ALQ_83dcf71a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.WGS.N C3N-03005 UCEC WGS blood_normal CPT0247960002 CPT0247960002.WholeGenome.RP-1303.bam 56898050180 BAM submitted_aligned CPTAC3 d028fa1b-6ff7-434c-83b8-0cebe1465223 28ca3f6595f420a44e24fb07af11488f {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03005.WGS.N.hg38 C3N-03005 UCEC WGS blood_normal CPT0247960002 1ff09d98-fbb1-4c76-a9b2-89d6d6d611db_wgs_gdc_realn.bam 85141307683 BAM harmonized CPTAC3 d727a80b-069b-4e7d-af2e-efc35e450cc5 6118797b3d15fd968a265be40b163fb3 {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03005.WGS.T C3N-03005 UCEC WGS tumor CPT0247940006 CPT0247940006.WholeGenome.RP-1303.bam 60778731002 BAM submitted_aligned CPTAC3 75788105-8153-4da4-8e53-45c2df7e4e5f e64b16b9e103e4828d958a9aaa505fb1 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.WGS.T.hg38 C3N-03005 UCEC WGS tumor CPT0247940006 c2023af5-33df-4fda-9cea-651f670883d1_wgs_gdc_realn.bam 88074413179 BAM harmonized CPTAC3 dd0c1b49-1b32-4e7d-94b9-7c4431de5ba9 cf367d81503654bda9b2bc5169aef550 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.WXS.N C3N-03005 UCEC WXS blood_normal CPT0247960002 CPT0247960002.WholeExome.RP-1303.bam 27385246152 BAM submitted_aligned CPTAC3 6847419a-d970-45b6-82cf-c083c0236cae 6fc524650133e0b4388cc9edacd65d54 {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03005.WXS.N.hg38 C3N-03005 UCEC WXS blood_normal CPT0247960002 1ff09d98-fbb1-4c76-a9b2-89d6d6d611db_wxs_gdc_realn.bam 36969941505 BAM harmonized CPTAC3 1238a840-b705-49c8-ab8c-2985b27db421 caa01bd3bf500cdfb742e834d4a86853 {"aliquot_tag": "ALQ_319d827b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03005.WXS.T C3N-03005 UCEC WXS tumor CPT0247940006 CPT0247940006.WholeExome.RP-1303.bam 27725720744 BAM submitted_aligned CPTAC3 a16e7d5a-482e-4490-94ab-df291357fb40 88e7b3c33abe30147e35fcf11236df83 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03005.WXS.T.hg38 C3N-03005 UCEC WXS tumor CPT0247940006 c2023af5-33df-4fda-9cea-651f670883d1_wxs_gdc_realn.bam 38981632659 BAM harmonized CPTAC3 73368a54-aef7-435b-8614-434d0878a242 5300198f63d0c6b25d5b99ee874629d8 {"aliquot_tag": "ALQ_4c301502", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03006.MethArray.Green.T C3N-03006 PDA Methylation_Array tumor CPT0226530007 203561450062_R06C01_Grn.idat 13676217 IDAT Green NA CPTAC3 4361c03f-4430-4df1-82dd-3623422b816f a4eb6d9c0d412eee0cbd0df7832c0651 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.MethArray.Red.T C3N-03006 PDA Methylation_Array tumor CPT0226530007 203561450062_R06C01_Red.idat 13676217 IDAT Red NA CPTAC3 7f4e4a5c-99b6-4512-908c-cb80dc3cbee5 bac25dfb30ef08d97ba864829f513aa3 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.miRNA-Seq.S19_L003_R1.T C3N-03006 PDA miRNA-Seq tumor CPT0226530014 190813_UNC32-K00270_0196_AH5MCWBBXY_CATGGC_S19_L003_R1_001.unaln.bam 311672891 BAM S19_L003_R1 submitted_unaligned CPTAC3 6cd86076-8d56-4f74-a976-46b4d87a4717 4f379e1a299e4ec109ea0078c304f9c9 {"aliquot_tag": "ALQ_1edf5b37", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.miRNA-Seq.T.hg38 C3N-03006 PDA miRNA-Seq tumor CPT0226530014 89365744-3b9c-471d-b923-46814e31ff2a_mirnaseq_gdc_realn.bam 353629087 BAM harmonized CPTAC3 60767f56-bed7-4a8d-b937-491775cc9583 bbfded9a66cdc01bc7d63bc5c45aaedf {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.RNA-Seq.chimeric.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.chimeric.gdc_realn.bam 38201474 BAM chimeric harmonized CPTAC3 afe67a1c-2111-458a-8766-bc28f35590d0 c2956d1180a07840cfb68e1e6316138c {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.RNA-Seq.genomic.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.genomic.gdc_realn.bam 9531109301 BAM genomic harmonized CPTAC3 9a13c97c-b6df-482f-9f2a-718d4622321e a36f7e01df681c94617b72ea75fea5a0 {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.RNA-Seq.S28_L007_R1.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R1_001.fastq.gz 4371309904 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 056f7b6d-efb7-4819-9688-cda521c7f33a fd3bd3ff2736a2e5047f7935b6e6d845 {"aliquot_tag": "ALQ_1edf5b37", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.RNA-Seq.S28_L007_R2.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R2_001.fastq.gz 4977189999 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 f0543f34-912b-4e61-b5f9-4edb67cd470b 1914a1e5f262a6bebadc9dcb89f8031c {"aliquot_tag": "ALQ_1edf5b37", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.RNA-Seq.transcriptome.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.transcriptome.gdc_realn.bam 12998677832 BAM transcriptome harmonized CPTAC3 13ac70e8-42cc-4733-891d-008e6a02d22e a4d00e8c3913080383c6c18014fadc17 {"aliquot_tag": "ALQ_1edf5b37", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.WGS.N C3N-03006 PDA WGS blood_normal CPT0226560002 CPT0226560002.WholeGenome.RP-1303.bam 61553450356 BAM submitted_aligned CPTAC3 63d7cc46-f4f5-475f-aef9-7d507d954ec0 643a38365109b8959fd7f3cda0490668 {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03006.WGS.N.hg38 C3N-03006 PDA WGS blood_normal CPT0226560002 3e7802fb-6c5a-401a-a96b-b4841658da68_wgs_gdc_realn.bam 90395514592 BAM harmonized CPTAC3 46a065d1-0954-45b5-8841-c4fcee9123ee ee267514eaae5045ed8fb86313731a5f {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03006.WGS.T C3N-03006 PDA WGS tumor CPT0226530007 CPT0226530007.WholeGenome.RP-1303.PDO-18613.bam 124434652726 BAM submitted_aligned CPTAC3 acc95aca-cca5-48a9-920f-acb8b0d03aea d627dca3d9198651f98f0039d48cc7de {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.WGS.T.hg38 C3N-03006 PDA WGS tumor CPT0226530007 958db0ae-6e71-4afb-9890-a4ee8c306257_wgs_gdc_realn.bam 181676498605 BAM harmonized CPTAC3 74fdc2cb-66b8-493c-a923-7a39181d6270 f99cfede1a81aa91f6e81f05ff11890e {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.WXS.N C3N-03006 PDA WXS blood_normal CPT0226560002 CPT0226560002.WholeExome.RP-1303.bam 24073727073 BAM submitted_aligned CPTAC3 f537ea50-61ba-48ee-ba16-7d1aad710f1f 20749fe891d258b36dc5a8bd75220c44 {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03006.WXS.N.hg38 C3N-03006 PDA WXS blood_normal CPT0226560002 3e7802fb-6c5a-401a-a96b-b4841658da68_wxs_gdc_realn.bam 33148493873 BAM harmonized CPTAC3 94490b00-bfd8-44d7-86cd-7c848ed8e719 8f97687a54799ad1647af21385d32867 {"aliquot_tag": "ALQ_26474033", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03006.WXS.T C3N-03006 PDA WXS tumor CPT0226530007 CPT0226530007.WholeExome.RP-1303.bam 31924884407 BAM submitted_aligned CPTAC3 f881cabd-a784-468f-8d0e-edf78397742d b9d0a16a650158bf5e4708ce39e322b1 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03006.WXS.T.hg38 C3N-03006 PDA WXS tumor CPT0226530007 958db0ae-6e71-4afb-9890-a4ee8c306257_wxs_gdc_realn.bam 44045889087 BAM harmonized CPTAC3 113496e6-5d52-4573-a1a7-d031b1d46bd1 0f1ba56f166790664a6cc35a3da5a673 {"aliquot_tag": "ALQ_9ecd3bcc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.MethArray.Green.T C3N-03007 PDA Methylation_Array tumor CPT0226570013 203561450048_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 481fc97f-42a5-449c-9955-fc42cc4fa701 a0819451615ec944309051fdc28678ef {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.MethArray.Red.T C3N-03007 PDA Methylation_Array tumor CPT0226570013 203561450048_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 7483daa9-c1b1-4295-8211-fadfaf1f529c a39ec0a778ebf2c61b0d92cfd8941155 {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.miRNA-Seq.S13_L003_R1.T C3N-03007 PDA miRNA-Seq tumor CPT0226570010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAAAAG_S13_L003_R1_001.unaln.bam 278175739 BAM S13_L003_R1 submitted_unaligned CPTAC3 5c651f4a-468a-4a8f-bbcf-8f2420b371fe a7ee02eb2b8265329d970afb8a3d39ee {"aliquot_tag": "ALQ_ec3239ee", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.miRNA-Seq.T.hg38 C3N-03007 PDA miRNA-Seq tumor CPT0226570010 af81d130-156c-49b8-9f30-a388d635207e_mirnaseq_gdc_realn.bam 310069264 BAM harmonized CPTAC3 136bfbc4-ef3f-4010-b8ca-1ddeaa1fad7d 640991e8b3fa9c3d45b9c71a4697506a {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.RNA-Seq.chimeric.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.chimeric.gdc_realn.bam 40934806 BAM chimeric harmonized CPTAC3 79b78562-731f-4875-b89a-6f56d579dd82 a8492f69967009b49e5ce5381c2bd309 {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.RNA-Seq.genomic.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.genomic.gdc_realn.bam 7527753144 BAM genomic harmonized CPTAC3 34cd1a8a-2d7f-48f6-a876-1c791c43d260 26fcb90368c1a0b5e2016d349c9efc95 {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.RNA-Seq.S23_L007_R1.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R1_001.fastq.gz 3614116156 FASTQ S23_L007_R1 submitted_unaligned CPTAC3 38fb3cc4-43a4-4536-8370-94a0ab4538cf d892d6b98224dd4e2cb41a2f7912270e {"aliquot_tag": "ALQ_ec3239ee", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.RNA-Seq.S23_L007_R2.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R2_001.fastq.gz 3904736055 FASTQ S23_L007_R2 submitted_unaligned CPTAC3 660046b6-72a3-4f00-9bec-bbc666a277fe 32bf3b3d662a70c7c0807766999edf17 {"aliquot_tag": "ALQ_ec3239ee", "sample": "S23", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.RNA-Seq.transcriptome.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.transcriptome.gdc_realn.bam 11064023979 BAM transcriptome harmonized CPTAC3 3e7a820b-cfc0-4061-8a22-b306896a920f 06a72f990824e588d2ccbb379075989b {"aliquot_tag": "ALQ_ec3239ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.WGS.N C3N-03007 PDA WGS blood_normal CPT0226590002 CPT0226590002.WholeGenome.RP-1303.bam 90965485437 BAM submitted_aligned CPTAC3 bea3a2cb-4ad8-43b3-8789-be4559224df8 b2785d00f753988212f0c86267397397 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03007.WGS.N.hg38 C3N-03007 PDA WGS blood_normal CPT0226590002 06feccc3-afda-4eb1-91bc-ae59081d8339_wgs_gdc_realn.bam 132571791273 BAM harmonized CPTAC3 9e54b6e9-adfe-423a-b41f-693f408088e5 9acb00594c1f66135f5a0b63be167e85 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03007.WGS.T C3N-03007 PDA WGS tumor CPT0226570013 CPT0226570013.WholeGenome.RP-1303.PDO-18613.bam 106533235357 BAM submitted_aligned CPTAC3 ae20451e-79a0-47d3-9990-c58c3f281f2f ba9c88763ee1749677821720863d9632 {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.WGS.T.hg38 C3N-03007 PDA WGS tumor CPT0226570013 be92ef4b-77d1-4001-854e-a2db4c19d555_wgs_gdc_realn.bam 156628867960 BAM harmonized CPTAC3 0fc68ef3-86b8-4605-8f3b-2004e6f4c8a9 6be17a1772189c42d0d5f4d1e5a5eaa6 {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.WXS.N C3N-03007 PDA WXS blood_normal CPT0226590002 CPT0226590002.WholeExome.RP-1303.bam 23823988263 BAM submitted_aligned CPTAC3 5969cb1f-44cc-4781-b8df-caa91d0ed0b7 4547fa63ed7fdad99a8bb86e06fbd9e4 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03007.WXS.N.hg38 C3N-03007 PDA WXS blood_normal CPT0226590002 06feccc3-afda-4eb1-91bc-ae59081d8339_wxs_gdc_realn.bam 32713150958 BAM harmonized CPTAC3 8bafb618-9fca-461d-9062-e10478b3b002 d17e8e8cb25bd82f9088ec4897f75834 {"aliquot_tag": "ALQ_a417d7e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03007.WXS.T C3N-03007 PDA WXS tumor CPT0226570013 CPT0226570013.WholeExome.RP-1303.bam 22369444455 BAM submitted_aligned CPTAC3 830b19a1-0d82-4c9b-bc27-6b72d31d561d 86de098377b0d5c2a61584d753f3ebad {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03007.WXS.T.hg38 C3N-03007 PDA WXS tumor CPT0226570013 be92ef4b-77d1-4001-854e-a2db4c19d555_wxs_gdc_realn.bam 30168476437 BAM harmonized CPTAC3 4881b28d-d851-424d-9c0e-5c72fa48a062 54d50ead246254598b6eb225aa62a42e {"aliquot_tag": "ALQ_753b6854", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.MethArray.Green.T C3N-03008 HNSCC Methylation_Array tumor CPT0245010009 203219640047_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 00097212-12fe-4c8b-b79e-45eef5768d5b 9b69f5d7f2290f8b0b74c75449e377fa {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.MethArray.Red.T C3N-03008 HNSCC Methylation_Array tumor CPT0245010009 203219640047_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 51af3f70-d83e-4760-bb4a-20f1462a265d 63b9d6040b3f5efcdfdc995ff6bbca76 {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.miRNA-Seq.S18_L005_R1.T C3N-03008 HNSCC miRNA-Seq tumor CPT0245010006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L005_R1_001.unaln.bam 236954204 BAM S18_L005_R1 submitted_unaligned CPTAC3 54d0c9ee-c935-4690-8217-3d2014d8e5dc 5941a653eea0306f48ca8e21cd0774f9 {"aliquot_tag": "ALQ_3440da93", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.miRNA-Seq.T.hg38 C3N-03008 HNSCC miRNA-Seq tumor CPT0245010006 ccfa82a2-b9db-4804-a14b-273a7859ee90_mirnaseq_gdc_realn.bam 265700251 BAM harmonized CPTAC3 c692350f-19b7-4eeb-995c-c6652722bf2b cbf0ae1296b309c66ed42f2a556c8ad3 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.chimeric.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.chimeric.gdc_realn.bam 27987332 BAM chimeric harmonized CPTAC3 de0ae0e8-fce1-45bb-9b3c-de8ff9f87782 fea522a51882c4b39f16b32728c03f10 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.chimeric.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.chimeric.gdc_realn.bam 149384848 BAM chimeric harmonized CPTAC3 900c73a2-de11-4c0f-bbc6-25f3ae4cafc5 7e6108de83f51de087dbfc9132f925a6 {"aliquot_tag": "ALQ_5d38e493", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.genomic.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.genomic.gdc_realn.bam 7753794291 BAM genomic harmonized CPTAC3 38589697-693c-42db-8a9c-0e17f0f64920 bd1695c02e4249e0dae2e74a17d17c29 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.genomic.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.genomic.gdc_realn.bam 7695246783 BAM genomic harmonized CPTAC3 44565a7e-1573-4f44-86f4-9fb99f08dafc b17a7cdb9db5a678a9f82c88a8f4fc5b {"aliquot_tag": "ALQ_5d38e493", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.S30_L007_R1.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R1_001.fastq.gz 3587409141 FASTQ S30_L007_R1 submitted_unaligned CPTAC3 0e8ce9ca-95c9-4acc-81e1-22122cb29d9e e302a9a0583d2705d1b3e562f4abdd34 {"aliquot_tag": "ALQ_3440da93", "sample": "S30", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.S30_L007_R2.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R2_001.fastq.gz 4115598796 FASTQ S30_L007_R2 submitted_unaligned CPTAC3 89e20074-6f16-4241-a848-988bf99d0aae 0171f56977fe96d3590f7f6905e27b60 {"aliquot_tag": "ALQ_3440da93", "sample": "S30", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.S31_R1.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R1_001.fastq.gz 4982943277 FASTQ S31_R1 submitted_unaligned CPTAC3 8ca6d9ed-a4b3-487e-b876-f64687a85ce7 1f2a1852982a506822cc9a3850a1848d {"aliquot_tag": "ALQ_5d38e493", "sample": "S31", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.S31_R2.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R2_001.fastq.gz 5139794458 FASTQ S31_R2 submitted_unaligned CPTAC3 e8d8e7e6-8114-4970-ad66-fc1078ba5cac 2f447edad95a036baf3a8025e270b510 {"aliquot_tag": "ALQ_5d38e493", "sample": "S31", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.transcriptome.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.transcriptome.gdc_realn.bam 11551834441 BAM transcriptome harmonized CPTAC3 40a3842f-462f-491b-a60f-2fe084448db3 26515b341384ec06db0d8a351db0bd43 {"aliquot_tag": "ALQ_3440da93", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.RNA-Seq.transcriptome.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.transcriptome.gdc_realn.bam 4515465903 BAM transcriptome harmonized CPTAC3 a12aa71c-d071-4790-a31c-8fcdf15fd36a a1c154de6260375b136d569e9070b606 {"aliquot_tag": "ALQ_5d38e493", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.WGS.N C3N-03008 HNSCC WGS blood_normal CPT0245050002 CPT0245050002.WholeGenome.RP-1303.bam 73019043461 BAM submitted_aligned CPTAC3 4934bd05-d9ee-4aae-99e8-556fbf7c50ca 85122749f63c1d0b45a8e0a39b4ca665 {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03008.WGS.N.hg38 C3N-03008 HNSCC WGS blood_normal CPT0245050002 53a06935-8741-489c-96b7-746a3038c7aa_wgs_gdc_realn.bam 106357939544 BAM harmonized CPTAC3 5a516ede-33b0-42b4-a6c2-8b82ba9ed60b c2a97e5dffc410d144a8c8899322cf1b {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03008.WGS.T C3N-03008 HNSCC WGS tumor CPT0245010009 CPT0245010009.WholeGenome.RP-1303.bam 75485035554 BAM submitted_aligned CPTAC3 f0b6a63f-ed37-4abf-a460-dd791c878255 78db113c492dea4616e79fc6a8c34da8 {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.WGS.T.hg38 C3N-03008 HNSCC WGS tumor CPT0245010009 b48e2290-8837-4918-9e64-4b74b5ff0a2f_wgs_gdc_realn.bam 110420525336 BAM harmonized CPTAC3 6c0d652a-0208-4b5f-bf52-5f64dc1067a9 257278fc3159a314a4d3f6048d1baa6a {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.WXS.N C3N-03008 HNSCC WXS blood_normal CPT0245050002 CPT0245050002.WholeExome.RP-1303.bam 30477202265 BAM submitted_aligned CPTAC3 2c337492-7a47-45c0-a57d-128c28426cc4 813905e7dd52af713736b9252ccff17f {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03008.WXS.N.hg38 C3N-03008 HNSCC WXS blood_normal CPT0245050002 53a06935-8741-489c-96b7-746a3038c7aa_wxs_gdc_realn.bam 42036879160 BAM harmonized CPTAC3 a3a70eb9-a1c8-41b3-963b-2809fbbd6a23 166d362df5d4ba1a9f836df464f20df7 {"aliquot_tag": "ALQ_c6adb84a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03008.WXS.T C3N-03008 HNSCC WXS tumor CPT0245010009 CPT0245010009.WholeExome.RP-1303.bam 23803753239 BAM submitted_aligned CPTAC3 465a357c-81f6-41d6-b0ff-21b748731b9c 078732edbee0bff081292b68b222b0f7 {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03008.WXS.T.hg38 C3N-03008 HNSCC WXS tumor CPT0245010009 b48e2290-8837-4918-9e64-4b74b5ff0a2f_wxs_gdc_realn.bam 32617838404 BAM harmonized CPTAC3 9df1aa2b-46cf-40ff-8dea-64df2bf41248 9b553b29a463f547f45a3de21e5de30f {"aliquot_tag": "ALQ_a4ffc702", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.MethArray.Green.T C3N-03009 HNSCC Methylation_Array tumor CPT0245060010 203281980258_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1977e2d1-ac93-442d-b27f-672aea70b08b e20ba946b77e805914e8b200bd5d4a0b {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.MethArray.Red.T C3N-03009 HNSCC Methylation_Array tumor CPT0245060010 203281980258_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 d6b1e5bb-125b-4a33-9c21-d0a5232cc33a 5073fc16e64ff94b0b2bbdc41015afa0 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.miRNA-Seq.S19_L005_R1.T C3N-03009 HNSCC miRNA-Seq tumor CPT0245060007 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L005_R1_001.unaln.bam 234912586 BAM S19_L005_R1 submitted_unaligned CPTAC3 b5229a46-623d-49d0-ab0f-52386b87cb8b 301824079e6c9ecfe69a84c5e8490241 {"aliquot_tag": "ALQ_f1673615", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.miRNA-Seq.T.hg38 C3N-03009 HNSCC miRNA-Seq tumor CPT0245060007 3fe0b818-da8b-48e8-988e-2f30b7e567ae_mirnaseq_gdc_realn.bam 265313300 BAM harmonized CPTAC3 39689338-99da-4b39-9a6a-d42466c55a01 4e024aeb3560b652bc96118e0628f3f9 {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.RNA-Seq.chimeric.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.chimeric.gdc_realn.bam 41489644 BAM chimeric harmonized CPTAC3 412f735f-ce32-474a-92f2-9b884a2f235a 0fce858fe05f4b9466a9c4ea53ab69cd {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.RNA-Seq.genomic.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.genomic.gdc_realn.bam 9752931356 BAM genomic harmonized CPTAC3 19c6bd74-3bd3-4a9b-a5cb-0af4c74af768 90308caa58fe9b4041628f687397d2f1 {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.RNA-Seq.S31_L007_R1.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R1_001.fastq.gz 4512753317 FASTQ S31_L007_R1 submitted_unaligned CPTAC3 c354fbe3-7b40-4676-a5dc-3fe883b88172 323341e8adae61706608eed64e5bc2fc {"aliquot_tag": "ALQ_f1673615", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.RNA-Seq.S31_L007_R2.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R2_001.fastq.gz 5041716224 FASTQ S31_L007_R2 submitted_unaligned CPTAC3 4a882e0c-9422-4179-8107-7021717d674a e65153c5abecf65626a7e6a5f4b06404 {"aliquot_tag": "ALQ_f1673615", "sample": "S31", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.RNA-Seq.transcriptome.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.transcriptome.gdc_realn.bam 12710443574 BAM transcriptome harmonized CPTAC3 d7533ea7-145d-453b-b9fa-cc5377c3e043 dc775e9cf314cd0dfcaf62e777ae59da {"aliquot_tag": "ALQ_f1673615", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.WGS.N C3N-03009 HNSCC WGS blood_normal CPT0245120002 CPT0245120002.WholeGenome.RP-1303.bam 67890003502 BAM submitted_aligned CPTAC3 d232340d-265a-4cd9-b70c-11f40a3e0bd2 2bacce0b6ee3a8715b607b72af573716 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03009.WGS.N.hg38 C3N-03009 HNSCC WGS blood_normal CPT0245120002 37895c79-b9a4-477b-944f-4b6bc6ba35fa_wgs_gdc_realn.bam 98582346407 BAM harmonized CPTAC3 e9de8143-0b87-47d8-bded-e64cc9dcf296 0d0c1bb5dfc741f47563c19449d8d5c3 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03009.WGS.T C3N-03009 HNSCC WGS tumor CPT0245060010 CPT0245060010.WholeGenome.RP-1303.bam 73611970825 BAM submitted_aligned CPTAC3 99452de0-5920-439d-95fa-2db8cbb8dfb2 58307e31e468905d6d2b652af9e6a518 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.WGS.T.hg38 C3N-03009 HNSCC WGS tumor CPT0245060010 90145130-3310-45db-88ae-b35e80588501_wgs_gdc_realn.bam 107459152965 BAM harmonized CPTAC3 246fa96d-c170-4265-a036-5b8ec6063d47 f024e3955c60a205b1655f635c576f98 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.WXS.N C3N-03009 HNSCC WXS blood_normal CPT0245120002 CPT0245120002.WholeExome.RP-1303.bam 26873008655 BAM submitted_aligned CPTAC3 48969068-4704-467a-9dc1-896afb12c6d3 25eca21876027031d22720093aba9271 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03009.WXS.N.hg38 C3N-03009 HNSCC WXS blood_normal CPT0245120002 37895c79-b9a4-477b-944f-4b6bc6ba35fa_wxs_gdc_realn.bam 36400661054 BAM harmonized CPTAC3 49002442-f283-4224-badd-731a5f3b230e 01b8a0aa11794b236a00074d732f2438 {"aliquot_tag": "ALQ_bfd1b7ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03009.WXS.T C3N-03009 HNSCC WXS tumor CPT0245060010 CPT0245060010.WholeExome.RP-1303.bam 25216058571 BAM submitted_aligned CPTAC3 84475090-95f9-4eb5-88b6-ced8e94c36c1 95dc1fe8c728e5538305349e5fafcaf6 {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03009.WXS.T.hg38 C3N-03009 HNSCC WXS tumor CPT0245060010 90145130-3310-45db-88ae-b35e80588501_wxs_gdc_realn.bam 35028625570 BAM harmonized CPTAC3 bc1e1a2d-e9f9-4003-9d15-361dd2b70006 8d79517e8791041c5b653027c7eb8b0b {"aliquot_tag": "ALQ_761892f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.MethArray.Green.T C3N-03011 HNSCC Methylation_Array tumor CPT0226250007 203271750047_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1a6ecc31-9c6a-4136-8e40-97e8bc2a0129 5712dd713f3f72ca7590500833b91c6c {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.MethArray.Red.T C3N-03011 HNSCC Methylation_Array tumor CPT0226250007 203271750047_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 2a6c33a2-6eee-4c7b-bff1-0ce4bd0912d0 b17d250a54950622dc5a6d55d8e968b6 {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.miRNA-Seq.S46_L004_R1.T C3N-03011 HNSCC miRNA-Seq tumor CPT0226250010 190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L004_R1_001.unaln.bam 305656246 BAM S46_L004_R1 submitted_unaligned CPTAC3 645ded41-f98a-462b-a73d-48d66723966e 34daa5d6010724e0877eddfeac8e8d98 {"aliquot_tag": "ALQ_8bf75a36", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.miRNA-Seq.T.hg38 C3N-03011 HNSCC miRNA-Seq tumor CPT0226250010 e7f427f6-091d-431b-945f-12851033aa2e_mirnaseq_gdc_realn.bam 337309315 BAM harmonized CPTAC3 b4dd6558-52bc-468d-aa1a-e14faf364dcd 99b91e6a7ac281e870cca97c4899e95c {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.RNA-Seq.chimeric.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.chimeric.gdc_realn.bam 173068997 BAM chimeric harmonized CPTAC3 1eaba20e-a1fc-4667-afe9-9fd369c53c4c 8692aeb0b5cb4f553b06124515402a19 {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.RNA-Seq.genomic.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.genomic.gdc_realn.bam 8793820542 BAM genomic harmonized CPTAC3 84bfafc7-d3f6-4b63-a34a-20d1ecd93802 ccf53cb58793e344502a5d91e1e2bbdb {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.RNA-Seq.S27_L007_R1.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R1_001.fastq.gz 4224615040 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 bb7fe347-537b-46b3-b300-ea9d775f716a a235337a5262643de52c065b8d94b112 {"aliquot_tag": "ALQ_8bf75a36", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.RNA-Seq.S27_L007_R2.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R2_001.fastq.gz 4739667298 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 7b932eed-671e-4b27-89df-8e0357a925c1 9b2b764661a776b14e36b83980eaf75a {"aliquot_tag": "ALQ_8bf75a36", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.RNA-Seq.transcriptome.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.transcriptome.gdc_realn.bam 11011905177 BAM transcriptome harmonized CPTAC3 afac5f5a-fb19-4a4f-9d43-e469b3f023ed 3d19d7eff86f85b94d2119f5f3770eb3 {"aliquot_tag": "ALQ_8bf75a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.WGS.N C3N-03011 HNSCC WGS blood_normal CPT0226330002 CPT0226330002.WholeGenome.RP-1303.bam 63021848996 BAM submitted_aligned CPTAC3 1fe8a988-3b5e-4c6e-ae78-206f6b34eb53 85e7657fafb58c064bce39a2226b41b3 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03011.WGS.N.hg38 C3N-03011 HNSCC WGS blood_normal CPT0226330002 aef40198-603b-421a-a1e1-e4522062473d_wgs_gdc_realn.bam 89998351315 BAM harmonized CPTAC3 0d675519-2a71-4a42-a87d-3a5713992399 d3819146d0821bcf2b128a8f25c53314 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03011.WGS.T C3N-03011 HNSCC WGS tumor CPT0226250007 CPT0226250007.WholeGenome.RP-1303.bam 65017126391 BAM submitted_aligned CPTAC3 e8330624-44ad-494b-ab3d-c26d8d437370 812d088719896fa52bc3a8d5d0c63501 {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.WGS.T.hg38 C3N-03011 HNSCC WGS tumor CPT0226250007 50460a1e-b6e3-48fe-a098-d3d5e11446af_wgs_gdc_realn.bam 96545361089 BAM harmonized CPTAC3 a2ec9f78-bcbc-4303-b34e-5369637d40b2 07d8229db29e06fdfdc19f3f01b544ee {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.WXS.N C3N-03011 HNSCC WXS blood_normal CPT0226330002 CPT0226330002.WholeExome.RP-1303.bam 19961835704 BAM submitted_aligned CPTAC3 35bb8595-062c-4a42-adc2-af3b52475d9a 64160ee28d7753f40a2c1c651ef1d1d0 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03011.WXS.N.hg38 C3N-03011 HNSCC WXS blood_normal CPT0226330002 aef40198-603b-421a-a1e1-e4522062473d_wxs_gdc_realn.bam 27686451463 BAM harmonized CPTAC3 58ab19b2-abf2-46fa-ba8c-f86974c96bfa 9ea62bff1455836ea71b9eec90e9c377 {"aliquot_tag": "ALQ_38fe2c5e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03011.WXS.T C3N-03011 HNSCC WXS tumor CPT0226250007 CPT0226250007.WholeExome.RP-1303.bam 22288219531 BAM submitted_aligned CPTAC3 175e55a7-54a5-485f-92d4-9cfb2b8f3c46 091de9fd517f310f200d639e92c9fc8c {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03011.WXS.T.hg38 C3N-03011 HNSCC WXS tumor CPT0226250007 50460a1e-b6e3-48fe-a098-d3d5e11446af_wxs_gdc_realn.bam 30806756634 BAM harmonized CPTAC3 957b7c21-5430-4197-9d20-acdc442567ad 3cbb08d6946b6e9527c0e8bf4c047421 {"aliquot_tag": "ALQ_c88fed4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.MethArray.Green.T C3N-03012 HNSCC Methylation_Array tumor CPT0226340006 203271750010_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 188a1181-ea37-45d8-88c1-e74cf10411f6 f41926f7104e8755b9ab7543f651f1d0 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.MethArray.Red.T C3N-03012 HNSCC Methylation_Array tumor CPT0226340006 203271750010_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 eea1f8bb-5005-4afd-913c-a8995ecc51a8 7d9fb5ed97c6aedeebfdc2dbef965cf1 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.miRNA-Seq.S47_L004_R1.T C3N-03012 HNSCC miRNA-Seq tumor CPT0226340009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L004_R1_001.unaln.bam 245792823 BAM S47_L004_R1 submitted_unaligned CPTAC3 1d1b652b-7d8c-4b28-8b97-f47754afa7d1 c59b8cc4d2f6142584a9ed973a89773a {"aliquot_tag": "ALQ_1d0c29c6", "sample": "S47", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.miRNA-Seq.T.hg38 C3N-03012 HNSCC miRNA-Seq tumor CPT0226340009 b33ee650-4a8c-4265-8db9-b20902b90b4c_mirnaseq_gdc_realn.bam 275644427 BAM harmonized CPTAC3 f7284c1b-75ec-4412-aa25-536b8c67e7ce 5e921b1c609d363bffdfff5ce6993733 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.chimeric.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.chimeric.gdc_realn.bam 114614364 BAM chimeric harmonized CPTAC3 7d601f82-93a1-49fe-845a-df4aabf56ce4 f1bbb75341a2a5b0909281c177b80057 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.chimeric.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.chimeric.gdc_realn.bam 151799251 BAM chimeric harmonized CPTAC3 bd2fb781-f156-4637-aee9-1e77f4195dcb 4264bc7c4e0b3e80084af08705724163 {"aliquot_tag": "ALQ_e6ccbf8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.genomic.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.genomic.gdc_realn.bam 8039228848 BAM genomic harmonized CPTAC3 a9aec893-5323-49e1-a62b-10415ee936d8 cf4c26380afc717d1b2c8d047c01d638 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.genomic.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.genomic.gdc_realn.bam 10327327140 BAM genomic harmonized CPTAC3 59bb04fc-5b35-4493-a49f-8629e00a46d4 ab70dd034f6931713d9eeadf91cc94da {"aliquot_tag": "ALQ_e6ccbf8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.S26_L007_R1.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R1_001.fastq.gz 3862676144 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 7b8853a3-68e3-423b-9a17-e79552c94df5 66dfd71d25f682310b4d933699bceead {"aliquot_tag": "ALQ_1d0c29c6", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.S26_L007_R2.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R2_001.fastq.gz 4306540242 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 eec11126-0d63-40cf-80b0-eac8fd03223f 5f8a0044760ac0c8c417b2d9b5183e06 {"aliquot_tag": "ALQ_1d0c29c6", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.S39_R1.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R1_001.fastq.gz 6530123630 FASTQ S39_R1 submitted_unaligned CPTAC3 599c4cf8-e153-4ff3-b1d4-0a34d09888f9 a3718daff1eeb2db0908108ed3835109 {"aliquot_tag": "ALQ_e6ccbf8d", "sample": "S39", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.S39_R2.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R2_001.fastq.gz 6736363842 FASTQ S39_R2 submitted_unaligned CPTAC3 00d8164d-181a-4bc8-9b44-bac9de3dc8a4 e3b33b4b4eb4b8d6f9f356b3ea980334 {"aliquot_tag": "ALQ_e6ccbf8d", "sample": "S39", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.transcriptome.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.transcriptome.gdc_realn.bam 12118738451 BAM transcriptome harmonized CPTAC3 2ec5a42e-0b0a-4106-a513-85b680695b41 47ebf792360e069e75ad5cffd52700e6 {"aliquot_tag": "ALQ_1d0c29c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.RNA-Seq.transcriptome.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.transcriptome.gdc_realn.bam 7466501110 BAM transcriptome harmonized CPTAC3 55971f64-9bea-44f8-ada4-d1b8edbcaede 70e7bf6d5969f2fc478ff498ea457a23 {"aliquot_tag": "ALQ_e6ccbf8d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.WGS.N C3N-03012 HNSCC WGS blood_normal CPT0226380002 CPT0226380002.WholeGenome.RP-1303.bam 93790005406 BAM submitted_aligned CPTAC3 4b27cd8e-5873-4157-b200-ab2001c1cba6 dece6010de2d96bb08a9dc42a266ab2b {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03012.WGS.N.hg38 C3N-03012 HNSCC WGS blood_normal CPT0226380002 ebb5f809-802b-4bf2-a197-f89d4f4b68d8_wgs_gdc_realn.bam 137420742281 BAM harmonized CPTAC3 4504d055-56b9-488f-8a26-3f3332621133 59092809b59557bde07ea9d5857814c0 {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03012.WGS.T C3N-03012 HNSCC WGS tumor CPT0226340006 CPT0226340006.WholeGenome.RP-1303.bam 67534862404 BAM submitted_aligned CPTAC3 fecb45fd-8f3d-4e1e-bac6-c6abbe2b447b 1e26bda8bd3a61e76fe612d7d1ca8e07 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.WGS.T.hg38 C3N-03012 HNSCC WGS tumor CPT0226340006 f459f63f-b4a7-4e6c-a116-0370573db3f9_wgs_gdc_realn.bam 99492082319 BAM harmonized CPTAC3 296f1f58-b49b-43bb-89f2-65a92fddd987 2b5b57f768781cfc9e1363179dd053b8 {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.WXS.N C3N-03012 HNSCC WXS blood_normal CPT0226380002 CPT0226380002.WholeExome.RP-1303.bam 24974821386 BAM submitted_aligned CPTAC3 042c6d90-50ad-44ca-af49-ecab8ea93797 382e3f2cc810581c8a90e094437b7fba {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03012.WXS.N.hg38 C3N-03012 HNSCC WXS blood_normal CPT0226380002 ebb5f809-802b-4bf2-a197-f89d4f4b68d8_wxs_gdc_realn.bam 34090459435 BAM harmonized CPTAC3 9ae5fc89-f527-4314-a50e-6335a0f2721f 338c6d370da3fbf85dcd3d5ab993b359 {"aliquot_tag": "ALQ_4f2e1d4f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03012.WXS.T C3N-03012 HNSCC WXS tumor CPT0226340006 CPT0226340006.WholeExome.RP-1303.bam 32746111774 BAM submitted_aligned CPTAC3 4fb5427b-5030-4760-b158-8ceda894e5cd 53c2da5e7a8e285c7011e1b3c6e0f98e {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03012.WXS.T.hg38 C3N-03012 HNSCC WXS tumor CPT0226340006 f459f63f-b4a7-4e6c-a116-0370573db3f9_wxs_gdc_realn.bam 44219749813 BAM harmonized CPTAC3 18431365-1cc1-493a-b7ca-4f68040b8b5d ef8628fc6e5cb597002cb871a6cb40ee {"aliquot_tag": "ALQ_8db33457", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.MethArray.Green.T C3N-03013 HNSCC Methylation_Array tumor CPT0245130009 203220070165_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a755216a-0d83-4675-92ad-4b67037f7e2b 26c268a876af0b60dcd7afb6f26297f2 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.MethArray.Red.T C3N-03013 HNSCC Methylation_Array tumor CPT0245130009 203220070165_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 9a0b1979-73ef-40fb-a0a4-bf7d28ec1578 5264463d2e4c420623fdc21d43094b9f {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.miRNA-Seq.S20_L005_R1.T C3N-03013 HNSCC miRNA-Seq tumor CPT0245130006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L005_R1_001.unaln.bam 312232766 BAM S20_L005_R1 submitted_unaligned CPTAC3 32198d13-8711-4e90-b60d-f55ddc222b89 227a1375714acb2737980ea0d3d8605b {"aliquot_tag": "ALQ_85dc5a56", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.miRNA-Seq.T.hg38 C3N-03013 HNSCC miRNA-Seq tumor CPT0245130006 d895e6e0-7c21-46e6-acf4-a294b1731269_mirnaseq_gdc_realn.bam 344820238 BAM harmonized CPTAC3 d6bb07f5-805e-46c3-9783-a983e2704caa 4d337536d67a4ad0187c8dc6204c58a8 {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.chimeric.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.chimeric.gdc_realn.bam 38885348 BAM chimeric harmonized CPTAC3 3b02cc94-2d50-4a45-b609-4389573950ec cfa26d9e7593a410aa5bf372f901bba8 {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.chimeric.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.chimeric.gdc_realn.bam 137250678 BAM chimeric harmonized CPTAC3 551e487e-dd1e-4c76-bf3e-bafd58d19bad e35147dae10ac8b3dc1b994abab3cbf2 {"aliquot_tag": "ALQ_698c4a2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.genomic.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.genomic.gdc_realn.bam 9077154671 BAM genomic harmonized CPTAC3 b20b2d42-0573-4f9b-86da-9a05ffea5c27 7fa4b16f8e70c23efcd6645f0ae456e5 {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.genomic.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.genomic.gdc_realn.bam 7050867541 BAM genomic harmonized CPTAC3 23e85add-cbe5-4f2f-8ec0-5d1948551c9d b552ddd276e8f4ec6863496f0cca7113 {"aliquot_tag": "ALQ_698c4a2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.S32_L007_R1.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R1_001.fastq.gz 3926269896 FASTQ S32_L007_R1 submitted_unaligned CPTAC3 29dc40f9-75ae-46bb-a172-75cc64acebe9 025d8f5da97924ad3f2aa8c1d3db4765 {"aliquot_tag": "ALQ_85dc5a56", "sample": "S32", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.S32_L007_R2.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R2_001.fastq.gz 4488402215 FASTQ S32_L007_R2 submitted_unaligned CPTAC3 a08cd494-e2db-4bc1-9a86-dd02f4a262c1 b0543fffdea94f0f3ca8b03e8f6c3d50 {"aliquot_tag": "ALQ_85dc5a56", "sample": "S32", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.S67_R1.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R1_001.fastq.gz 4826217695 FASTQ S67_R1 submitted_unaligned CPTAC3 65b34fe6-430a-44d4-9762-f30ae63d6a1c e075ec41ce3b7e8f3f11258f25d7b3ea {"aliquot_tag": "ALQ_698c4a2d", "sample": "S67", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.S67_R2.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R2_001.fastq.gz 4972986140 FASTQ S67_R2 submitted_unaligned CPTAC3 b14bc543-55fc-4117-95ee-51147d0745b4 6421ff8113569a8972c35a6ded802949 {"aliquot_tag": "ALQ_698c4a2d", "sample": "S67", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.transcriptome.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.transcriptome.gdc_realn.bam 11290210726 BAM transcriptome harmonized CPTAC3 f87af881-1a80-48fc-b414-69372fa466b0 e9d9aa4adc80340df7b909f1f189069a {"aliquot_tag": "ALQ_85dc5a56", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.RNA-Seq.transcriptome.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.transcriptome.gdc_realn.bam 5634550585 BAM transcriptome harmonized CPTAC3 54836e0b-18d1-4d15-b9bf-573013c4d28d 75fc0ec44dd9c2576c762aabf70dcc57 {"aliquot_tag": "ALQ_698c4a2d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.WGS.N C3N-03013 HNSCC WGS blood_normal CPT0245170002 CPT0245170002.WholeGenome.RP-1303.bam 69588309348 BAM submitted_aligned CPTAC3 e9835e48-a5f3-47d8-9bcf-814221cfbef1 53016add9d6b82c7b82102c2afbc4249 {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03013.WGS.N.hg38 C3N-03013 HNSCC WGS blood_normal CPT0245170002 749a385c-3923-4592-af01-602ef6634c09_wgs_gdc_realn.bam 101852858850 BAM harmonized CPTAC3 f2964a4d-eb71-4944-b53b-0cc98448564c 67ca934792a4f63cd43ddfc678c35514 {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03013.WGS.T C3N-03013 HNSCC WGS tumor CPT0245130009 CPT0245130009.WholeGenome.RP-1303.bam 63655208400 BAM submitted_aligned CPTAC3 beaec16a-c3c5-47fb-90d9-308a6879eaef dfd3062cf5bea2b4fd3220c486d9b1c4 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.WGS.T.hg38 C3N-03013 HNSCC WGS tumor CPT0245130009 bda9b011-69a7-4e2d-a2a8-76f16043373f_wgs_gdc_realn.bam 92389657455 BAM harmonized CPTAC3 84a9c67c-89f8-4d60-927a-de6491bff5bc baba1d5edc5d737bff2cf52814b4cb4c {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.WXS.N C3N-03013 HNSCC WXS blood_normal CPT0245170002 CPT0245170002.WholeExome.RP-1303.bam 25734084669 BAM submitted_aligned CPTAC3 849e65d3-d27e-4dcd-8068-798c0b957628 6faead2e589e6abf01a7e601cb13d0c5 {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03013.WXS.N.hg38 C3N-03013 HNSCC WXS blood_normal CPT0245170002 749a385c-3923-4592-af01-602ef6634c09_wxs_gdc_realn.bam 34679537867 BAM harmonized CPTAC3 6fe75f44-dce3-4d1f-8e49-101661553d6c 480992b92bced7103d916af76b433fee {"aliquot_tag": "ALQ_7731388f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03013.WXS.T C3N-03013 HNSCC WXS tumor CPT0245130009 CPT0245130009.WholeExome.RP-1303.bam 39088207508 BAM submitted_aligned CPTAC3 273d8220-d3f1-4ce0-8e06-0f11f0bbb0a9 00e72c1caa04c3a7a28e66361d8afb18 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03013.WXS.T.hg38 C3N-03013 HNSCC WXS tumor CPT0245130009 bda9b011-69a7-4e2d-a2a8-76f16043373f_wxs_gdc_realn.bam 54944087921 BAM harmonized CPTAC3 ab9a4185-ec78-42a2-9271-6dc03d527829 dea54e469b72637febea82a86be2ed77 {"aliquot_tag": "ALQ_156347c7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.MethArray.Green.A C3N-03015 HNSCC Methylation_Array tissue_normal CPT0245190009 203271750083_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2d6e9186-0f43-45f7-9770-a478c24fcf73 cec11717e07ce7e08d1a63a2f2bff257 {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.MethArray.Green.T C3N-03015 HNSCC Methylation_Array tumor CPT0245180009 203220070154_R08C01_Grn.idat 13676207 IDAT Green NA CPTAC3 a250f58d-f32f-445a-a88e-d7d22f349a41 36d23941035fd601b4c828f4f0403724 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.MethArray.Red.A C3N-03015 HNSCC Methylation_Array tissue_normal CPT0245190009 203271750083_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 cd250ecb-4dcb-4419-a4f6-6ac7f5761488 0e6046be42ceac8ddbc22437c35f5f57 {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.MethArray.Red.T C3N-03015 HNSCC Methylation_Array tumor CPT0245180009 203220070154_R08C01_Red.idat 13676207 IDAT Red NA CPTAC3 0049cada-ffe1-47a7-9bad-6e821ccf511c 6bdc689e5bb6da741788b0e34b6c437c {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.miRNA-Seq.A.hg38 C3N-03015 HNSCC miRNA-Seq tissue_normal CPT0245190006 5d38cdf6-6db7-47e9-bba0-33b08daa283a_mirnaseq_gdc_realn.bam 351400448 BAM harmonized CPTAC3 0d0dffa4-caf1-477b-a3b5-b1c631131c75 92e095e1c02812f1b8b75e5e98b53bdb {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.miRNA-Seq.S21_L005_R1.T C3N-03015 HNSCC miRNA-Seq tumor CPT0245180006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L005_R1_001.unaln.bam 171946593 BAM S21_L005_R1 submitted_unaligned CPTAC3 adeb0107-ab82-4b58-8918-869af38258d3 b8f554ebc9ee2b347460b51d6d9dc0cd {"aliquot_tag": "ALQ_f20c6b47", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.miRNA-Seq.S36_L006_R1.A C3N-03015 HNSCC miRNA-Seq tissue_normal CPT0245190006 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L006_R1_001.unaln.bam 311417847 BAM S36_L006_R1 submitted_unaligned CPTAC3 dbbf34ce-b31e-4508-82b0-055356c23582 b4eed39034b3371aa89e2c5bde252396 {"aliquot_tag": "ALQ_cf6c42f7", "sample": "S36", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.miRNA-Seq.T.hg38 C3N-03015 HNSCC miRNA-Seq tumor CPT0245180006 a5dd1237-287a-4d2d-9f90-cc5905e0d35e_mirnaseq_gdc_realn.bam 196721385 BAM harmonized CPTAC3 2dabc817-54f9-4199-87ce-9812b0a202a3 4e70adcd30e032b57e4d012a0371c1e5 {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.RNA-Seq.chimeric.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.chimeric.gdc_realn.bam 24891000 BAM chimeric harmonized CPTAC3 2661ec62-6626-4040-aa45-8b4df93759a9 6ad57f29eeeece46ac7cb284fb68391f {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.RNA-Seq.chimeric.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.chimeric.gdc_realn.bam 40724757 BAM chimeric harmonized CPTAC3 74cb3e2b-5e8d-4c94-897d-3047df22f857 1da318d800f830cea2d5c464f4a8fe51 {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.RNA-Seq.genomic.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.genomic.gdc_realn.bam 6978620064 BAM genomic harmonized CPTAC3 13cee554-168a-45eb-bcb2-8a8085c36ac8 ba406e3cb2e9b3d8137c30f47b893a3f {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.RNA-Seq.genomic.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.genomic.gdc_realn.bam 10934380046 BAM genomic harmonized CPTAC3 1183d130-2edd-4eb8-86ee-0dd9315238a4 8c8ddd01f5a6cb6db6c4aab2f488f26e {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.RNA-Seq.S12_L003_R1.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R1_001.fastq.gz 3338583559 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 d0aa4bbe-4978-447b-83de-7c30fead2c41 1d98e79d74cdaec6d7cee4db53267715 {"aliquot_tag": "ALQ_cf6c42f7", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.RNA-Seq.S12_L003_R2.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R2_001.fastq.gz 3728990244 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 eab348fb-e04f-4246-94de-a6094d0dc484 e910ef3c0246c3d9e790cd3d8de43197 {"aliquot_tag": "ALQ_cf6c42f7", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.RNA-Seq.S33_L008_R1.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R1_001.fastq.gz 4849498926 FASTQ S33_L008_R1 submitted_unaligned CPTAC3 96d2dcaf-0369-42ab-8fad-ea6453fbdbc8 78e586dd958d6cd767adfc4d1aa0323d {"aliquot_tag": "ALQ_f20c6b47", "sample": "S33", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.RNA-Seq.S33_L008_R2.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R2_001.fastq.gz 5610026313 FASTQ S33_L008_R2 submitted_unaligned CPTAC3 3e139705-ff7a-4715-8a37-f409a23606b4 a77d1adb7f682815dbf0a0eceb930715 {"aliquot_tag": "ALQ_f20c6b47", "sample": "S33", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.RNA-Seq.transcriptome.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.transcriptome.gdc_realn.bam 10851561246 BAM transcriptome harmonized CPTAC3 311ae124-d599-4327-a618-5166d64396b4 ff34e6d2bfe0156ae58ca9a7fa0d76f6 {"aliquot_tag": "ALQ_cf6c42f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.RNA-Seq.transcriptome.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.transcriptome.gdc_realn.bam 15573666604 BAM transcriptome harmonized CPTAC3 69408743-ecc2-4ac8-8a7c-208996db20fb cf55d5aaa3e1bddc669d09ef2308d9a8 {"aliquot_tag": "ALQ_f20c6b47", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.WGS.N C3N-03015 HNSCC WGS blood_normal CPT0245220002 CPT0245220002.WholeGenome.RP-1303.bam 71135987800 BAM submitted_aligned CPTAC3 efa03691-abe1-4a04-9482-f3a4c6c091e0 ab994bb6ff0e86967d424a573e96d889 {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03015.WGS.N.hg38 C3N-03015 HNSCC WGS blood_normal CPT0245220002 b6f96b8b-abfc-4abc-8495-ed638b7f3e1e_wgs_gdc_realn.bam 105411263940 BAM harmonized CPTAC3 0fa22853-6f42-4c51-b497-7d6e99de1338 f4230575d5a9d4461376437c76187c12 {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03015.WGS.T C3N-03015 HNSCC WGS tumor CPT0245180009 CPT0245180009.WholeGenome.RP-1303.bam 68215797925 BAM submitted_aligned CPTAC3 6e1def99-e64f-42e6-8b36-03d39cd39d1f f0cc0fbf1386837e812585bc0f65af43 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.WGS.T.hg38 C3N-03015 HNSCC WGS tumor CPT0245180009 57381eac-4fd0-41d7-a67a-4396584c0dce_wgs_gdc_realn.bam 100678083227 BAM harmonized CPTAC3 40055c9f-993d-45f1-98a5-b3f0bc0a4b4f bf159f184a3c17a798b0717d5b01976c {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.WXS.A C3N-03015 HNSCC WXS tissue_normal CPT0245190009 CPT0245190009.WholeExome.RP-1303.bam 29082043390 BAM submitted_aligned CPTAC3 1b62f5da-4e54-464a-8864-ee829f61ea41 c089609f4458dc080be1e315d2ba377e {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.WXS.A.hg38 C3N-03015 HNSCC WXS tissue_normal CPT0245190009 3ed5a1e5-6093-455b-9d3c-04ea6c53755f_wxs_gdc_realn.bam 39976265546 BAM harmonized CPTAC3 9f84fc76-9584-4025-923f-f20f5dd30f89 23045539dd34daa74b16aa3fd2878d7f {"aliquot_tag": "ALQ_5fd35f66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03015.WXS.N C3N-03015 HNSCC WXS blood_normal CPT0245220002 CPT0245220002.WholeExome.RP-1303.bam 30553379195 BAM submitted_aligned CPTAC3 d061e833-2870-4ebf-a24d-981ae55878a7 1d15d14bd5167e459ec719f85e74451e {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03015.WXS.N.hg38 C3N-03015 HNSCC WXS blood_normal CPT0245220002 b6f96b8b-abfc-4abc-8495-ed638b7f3e1e_wxs_gdc_realn.bam 41262511455 BAM harmonized CPTAC3 f28be4c8-230c-4769-9a1d-f5e4cf9d1f98 2714bcae3e2e98a89a0d7599e70d4286 {"aliquot_tag": "ALQ_3945c551", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03015.WXS.T C3N-03015 HNSCC WXS tumor CPT0245180009 CPT0245180009.WholeExome.RP-1303.bam 22638757792 BAM submitted_aligned CPTAC3 677d2728-f51d-411f-b9e3-ad6afdc0bebc a8f6614a1fac80105c396a863d3e52c8 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03015.WXS.T.hg38 C3N-03015 HNSCC WXS tumor CPT0245180009 57381eac-4fd0-41d7-a67a-4396584c0dce_wxs_gdc_realn.bam 31076543016 BAM harmonized CPTAC3 c1a5e290-a06e-4df4-b5d6-93326f8b76a3 5a47b3eed8b1c77d7d9ed2e7c7adc579 {"aliquot_tag": "ALQ_62b376d6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.MethArray.Green.A C3N-03018 CCRCC Methylation_Array tissue_normal CPT0188990009 204930640120_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2c2ce89b-be54-4702-a376-47d5fdb9f6c2 0c6b8621f07d47267f3f092a5be96ebb {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.MethArray.Green.T C3N-03018 CCRCC Methylation_Array tumor CPT0188980011 203220070171_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8f0d2fe0-561a-437b-955e-0992f3a02239 e1e01f907e159c383c1817bde99c5c85 {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.MethArray.Red.A C3N-03018 CCRCC Methylation_Array tissue_normal CPT0188990009 204930640120_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 5dc1231a-f9c3-46c6-bb26-175f2946db85 659804ebfed269670fbf04996e846e39 {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.MethArray.Red.T C3N-03018 CCRCC Methylation_Array tumor CPT0188980011 203220070171_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 cb8695ec-5db0-4095-a8ca-2a572710eb0b 853f6be643c240544a5f29b16bf37a0b {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.miRNA-Seq.A.hg38 C3N-03018 CCRCC miRNA-Seq tissue_normal CPT0188990006 b547a548-1875-4247-b617-921844ff1628_mirnaseq_gdc_realn.bam 270737142 BAM harmonized CPTAC3 121f7f9d-02f9-4eef-835b-2d762c186698 219cb99b0357910482221b394a3be6b2 {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.miRNA-Seq.S36_L005_R1.T C3N-03018 CCRCC miRNA-Seq tumor CPT0188980009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCAACA_S36_L005_R1_001.unaln.bam 164701257 BAM S36_L005_R1 submitted_unaligned CPTAC3 6fd230c8-5813-40ba-8ad4-5d377c8d2f8d 6810b56821d9ec2e4f1aa3b7c4ef520f {"aliquot_tag": "ALQ_8115bcf1", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.miRNA-Seq.S43_L002_R1.A C3N-03018 CCRCC miRNA-Seq tissue_normal CPT0188990006 190206_UNC31-K00269_0191_AH2WY5BBXY_GCCAAT_S43_L002_R1_001.unaln.bam 244060307 BAM S43_L002_R1 submitted_unaligned CPTAC3 068b2511-f8e8-4ad7-875a-50baeae172fa 5458bf29e737946f19770aa1b04da352 {"aliquot_tag": "ALQ_2cca88d0", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.miRNA-Seq.T.hg38 C3N-03018 CCRCC miRNA-Seq tumor CPT0188980009 eb92ef42-c4c9-4c6e-ad49-728bad7e52de_mirnaseq_gdc_realn.bam 182223645 BAM harmonized CPTAC3 0ce2451b-6ff8-4ca9-8350-c003620cf9dd 83dd6e07a703d70095ebffe7a8ed71cc {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.RNA-Seq.chimeric.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.chimeric.gdc_realn.bam 70255850 BAM chimeric harmonized CPTAC3 2c897022-33fb-489c-9d6d-57d4fd309357 0117e293dff2dfe318c53540f3b5598d {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.RNA-Seq.chimeric.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.chimeric.gdc_realn.bam 29787632 BAM chimeric harmonized CPTAC3 52f89368-3954-44b1-bff2-f17f316bcae9 5dd715ed624222167aee7d6598303025 {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.RNA-Seq.genomic.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.genomic.gdc_realn.bam 9180576302 BAM genomic harmonized CPTAC3 6e9eb4aa-9ef9-42c6-a9c7-8839174b1360 9e6370cbd0dbad844b41e8cf97337668 {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.RNA-Seq.genomic.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.genomic.gdc_realn.bam 8106249496 BAM genomic harmonized CPTAC3 0f3838ed-c43d-4043-810c-e759e3fb543c 60f4def6eeed0fb16dc82d36c30a9be9 {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.RNA-Seq.S14_L004_R1.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R1_001.fastq.gz 4236132263 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 1613a36c-b449-4dfc-84c0-78232ff07762 3b6b34f2fc83f96bb665e3abc927feb7 {"aliquot_tag": "ALQ_2cca88d0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.RNA-Seq.S14_L004_R2.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R2_001.fastq.gz 4713458088 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 398979c4-d7d7-47a5-a93d-2fb96fc1ad24 6ba05ed49bd76cb060db74762a2f8da7 {"aliquot_tag": "ALQ_2cca88d0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.RNA-Seq.S4_L007_R1.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R1_001.fastq.gz 3885272639 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 85813afd-2a5f-446f-a6c8-1b8437cae107 0267eb8ddd25e08d2abb69f2e67c1ff4 {"aliquot_tag": "ALQ_8115bcf1", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.RNA-Seq.S4_L007_R2.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R2_001.fastq.gz 4151472889 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 2f149e6d-2235-4629-b132-035a60c2a478 08dc41e8f88a641ea6e7f8e1a0940b61 {"aliquot_tag": "ALQ_8115bcf1", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.RNA-Seq.transcriptome.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.transcriptome.gdc_realn.bam 10193831790 BAM transcriptome harmonized CPTAC3 56f4cbe4-9bf7-4882-933b-9e3b77cccf1e f423615adc00b60e861a08920b62d28c {"aliquot_tag": "ALQ_2cca88d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.RNA-Seq.transcriptome.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.transcriptome.gdc_realn.bam 11698328411 BAM transcriptome harmonized CPTAC3 8440aa70-19b4-4183-bf11-2639a99623bc 78042007da4f5165dc305729376b5d64 {"aliquot_tag": "ALQ_8115bcf1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.WGS.N C3N-03018 CCRCC WGS blood_normal CPT0189020002 CPT0189020002.WholeGenome.RP-1303.bam 144361089803 BAM submitted_aligned CPTAC3 daff28dd-a0ba-4a6d-a590-58c68194e5bc cfb593376eaa21bccd35328e5982dc6c {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03018.WGS.N.hg38 C3N-03018 CCRCC WGS blood_normal CPT0189020002 8dea3282-81d6-4bd3-8b68-526f8b69f009_wgs_gdc_realn.bam 206770270686 BAM harmonized CPTAC3 fde130bd-1cda-4ed3-9193-0e580161d7ee f3305e9bcd723399fbaa885661c3ddb9 {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03018.WGS.T C3N-03018 CCRCC WGS tumor CPT0188980011 CPT0188980011.WholeGenome.RP-1303.bam 136196967978 BAM submitted_aligned CPTAC3 27535746-028f-434d-9180-94463a74672c 888f697217e9733a805f2abcb8f6ef03 {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.WGS.T.hg38 C3N-03018 CCRCC WGS tumor CPT0188980011 37f0be2f-5a23-4ecb-979f-940b7671d4d9_wgs_gdc_realn.bam 193723618248 BAM harmonized CPTAC3 39ef05a3-075e-4c24-8c15-a860dd878e69 d8c63cf57f7f61dcb2373976022c0b5a {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.WXS.A C3N-03018 CCRCC WXS tissue_normal CPT0188990009 CPT0188990009.WholeExome.RP-1303.bam 32166511040 BAM submitted_aligned CPTAC3 3646c65b-6b01-42f3-bf29-15518d595a91 aa5670555a49d55f7400f69a7f28e122 {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.WXS.A.hg38 C3N-03018 CCRCC WXS tissue_normal CPT0188990009 2fb0b68a-966c-477a-9145-90f3bd496647_wxs_gdc_realn.bam 44613758640 BAM harmonized CPTAC3 3c10613e-d1f1-427d-9f72-2fcebb42af69 74aadf9cf30de82722ebaa2122b27893 {"aliquot_tag": "ALQ_bc759541", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03018.WXS.N C3N-03018 CCRCC WXS blood_normal CPT0189020002 CPT0189020002.WholeExome.RP-1303.bam 20077608462 BAM submitted_aligned CPTAC3 e2b60b6a-878a-46af-bbc3-fb051dc1ecbb c4f775bc904e01353b263d19de757760 {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03018.WXS.N.hg38 C3N-03018 CCRCC WXS blood_normal CPT0189020002 8dea3282-81d6-4bd3-8b68-526f8b69f009_wxs_gdc_realn.bam 27253469823 BAM harmonized CPTAC3 d10a6964-3782-45a3-a36e-012d3a6da23a a0095eb91b1f5dfbbbd97b58405c13e6 {"aliquot_tag": "ALQ_dd0f27a4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03018.WXS.T C3N-03018 CCRCC WXS tumor CPT0188980011 CPT0188980011.WholeExome.RP-1303.bam 25149269384 BAM submitted_aligned CPTAC3 51d0490a-959f-4ff8-a222-335a1a33df62 a3ed004106d79de5cc41adb9f2cd5e3f {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03018.WXS.T.hg38 C3N-03018 CCRCC WXS tumor CPT0188980011 37f0be2f-5a23-4ecb-979f-940b7671d4d9_wxs_gdc_realn.bam 34576572531 BAM harmonized CPTAC3 9e37deb7-611f-434a-920d-765422d1077d a5e449603f2668239438ca665b17420b {"aliquot_tag": "ALQ_96d50582", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.MethArray.Green.A C3N-03019 CCRCC Methylation_Array tissue_normal CPT0189040009 204930640108_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7b9ad1e0-0a41-42c0-9ee6-d9157a63e014 52d5f34a0a950e90d7f01edf800b6f08 {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.MethArray.Green.T C3N-03019 CCRCC Methylation_Array tumor CPT0189030006 203219650127_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ea08e712-9f01-41f6-b1d2-000dcfed697e f64d4ff61f87bf7250161fd3315b6322 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.MethArray.Red.A C3N-03019 CCRCC Methylation_Array tissue_normal CPT0189040009 204930640108_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 b264aa01-1ffe-4a43-8ff1-407dab45bdc2 1fea23ba43df488561dd444727039f17 {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.MethArray.Red.T C3N-03019 CCRCC Methylation_Array tumor CPT0189030006 203219650127_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 09d24bec-54b3-4eca-8634-6496fad407d3 46d5b924ebb344d9d36514a46012bd8b {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.miRNA-Seq.A.hg38 C3N-03019 CCRCC miRNA-Seq tissue_normal CPT0189040006 bfa1c963-a12e-412a-b243-2a856001b073_mirnaseq_gdc_realn.bam 211802550 BAM harmonized CPTAC3 6860d47c-8315-4593-afaa-e09dcfa80a2d e54b82789a6385e3e0fa3258b42894ed {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.miRNA-Seq.S37_L005_R1.T C3N-03019 CCRCC miRNA-Seq tumor CPT0189030009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L005_R1_001.unaln.bam 308961444 BAM S37_L005_R1 submitted_unaligned CPTAC3 0e1b5e1b-30e3-459f-a9d7-637845cfefc2 008d1340e275e1f8a3b350d6b4c29bf8 {"aliquot_tag": "ALQ_77bdd79c", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.miRNA-Seq.S42_L002_R1.A C3N-03019 CCRCC miRNA-Seq tissue_normal CPT0189040006 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGATC_S42_L002_R1_001.unaln.bam 190739181 BAM S42_L002_R1 submitted_unaligned CPTAC3 57687b93-55e5-4d4f-a840-1c3109980f6d 9b754bd41f48533fb1959ecc32b086b1 {"aliquot_tag": "ALQ_5522161d", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.miRNA-Seq.T.hg38 C3N-03019 CCRCC miRNA-Seq tumor CPT0189030009 444dc913-e776-43d0-a143-bc297a8e42f2_mirnaseq_gdc_realn.bam 343732308 BAM harmonized CPTAC3 e933fc99-16da-4453-9504-592014aef4de a5ad143515f366dfff5d1317c5a5449b {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.RNA-Seq.chimeric.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.chimeric.gdc_realn.bam 126639952 BAM chimeric harmonized CPTAC3 1e8e363d-0ca5-46ac-a180-4627586fcc43 fef0802587c807bfe64d32d286aae85a {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.RNA-Seq.chimeric.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.chimeric.gdc_realn.bam 32312102 BAM chimeric harmonized CPTAC3 b451d952-7f90-4845-b9c4-19856f101193 2d7a46728237a1a7954b1bc6ddefc9dc {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.RNA-Seq.genomic.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.genomic.gdc_realn.bam 8927009207 BAM genomic harmonized CPTAC3 bffbf5b5-c50c-4347-a249-0661043a4050 dbc8cd68786cd7e6d0c2782a7e25856c {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.RNA-Seq.genomic.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.genomic.gdc_realn.bam 7171496116 BAM genomic harmonized CPTAC3 4f7be28b-43b3-4668-8a77-a1925306a139 0bba3ea2ad050980dfd380bfb491ed4c {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.RNA-Seq.S13_L004_R1.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R1_001.fastq.gz 4101502023 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 398467bc-30da-4d22-90f2-576c928cc6db 2be95be73a73e746cfaaa88e6cbe6b4b {"aliquot_tag": "ALQ_5522161d", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.RNA-Seq.S13_L004_R2.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R2_001.fastq.gz 4557784067 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 4bdcc52d-a58e-40fe-9bfb-bf62c670e53a 97be6649e9b3772290756b1177e742aa {"aliquot_tag": "ALQ_5522161d", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.RNA-Seq.S5_L008_R1.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R1_001.fastq.gz 3570715965 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 0101c8bc-d732-400b-85ae-045318f8bec7 226f74cbf04137025b3707d429d4a5e7 {"aliquot_tag": "ALQ_77bdd79c", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.RNA-Seq.S5_L008_R2.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R2_001.fastq.gz 3781214014 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 ad158cb1-d670-4443-898b-6fba5c0c15dd 26f6fda50618646f4ea989f6a6da660f {"aliquot_tag": "ALQ_77bdd79c", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.RNA-Seq.transcriptome.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.transcriptome.gdc_realn.bam 9870590259 BAM transcriptome harmonized CPTAC3 4991fcdb-ddfc-41ce-b373-c77719c2f42c 97fbda3db12f3a2742f3d0855fe5764d {"aliquot_tag": "ALQ_5522161d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.RNA-Seq.transcriptome.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.transcriptome.gdc_realn.bam 9391785021 BAM transcriptome harmonized CPTAC3 9863466f-38d6-4e07-ae87-d6c7ad198a2a 99da1c724dc61d9018803d35a4a9b38e {"aliquot_tag": "ALQ_77bdd79c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.WGS.N C3N-03019 CCRCC WGS blood_normal CPT0189070002 CPT0189070002.WholeGenome.RP-1303.bam 88508002820 BAM submitted_aligned CPTAC3 442c40e4-bdf0-4ad0-b053-d3e6c949610e 19598dd4d475afa9e9b972f9444fcbb5 {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03019.WGS.N.hg38 C3N-03019 CCRCC WGS blood_normal CPT0189070002 6e1b1c10-87e8-47aa-b657-fbe0dc1fc448_wgs_gdc_realn.bam 127976849743 BAM harmonized CPTAC3 d09ff66c-8341-411d-9f80-1911a54424df 5efcd95ada168ae85f75a0246b102d1e {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03019.WGS.T C3N-03019 CCRCC WGS tumor CPT0189030006 CPT0189030006.WholeGenome.RP-1303.bam 95549142318 BAM submitted_aligned CPTAC3 f500bf5d-8c92-471b-9cd7-337d81433039 f619166aee212489a022741be11db173 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.WGS.T.hg38 C3N-03019 CCRCC WGS tumor CPT0189030006 f1f65a12-c36b-4484-b54f-97bb2abd5bc6_wgs_gdc_realn.bam 140502985611 BAM harmonized CPTAC3 9c02c21b-64a2-4254-bc90-a70b28524126 e817230e20cdb55335de09437e54aa10 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.WXS.A C3N-03019 CCRCC WXS tissue_normal CPT0189040009 CPT0189040009.WholeExome.RP-1303.bam 33863889223 BAM submitted_aligned CPTAC3 a950439f-00e8-41cb-b90d-e3fc47ff1f2a 105251e1fafced918f9ce2c62ee10447 {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.WXS.A.hg38 C3N-03019 CCRCC WXS tissue_normal CPT0189040009 27b72e6c-e5df-4eb4-9342-040c199ded13_wxs_gdc_realn.bam 47622975997 BAM harmonized CPTAC3 90080a89-96b0-4427-b89f-43b83caaacc4 22907fc76cc5793622287132006bb45c {"aliquot_tag": "ALQ_c59d0b8c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03019.WXS.N C3N-03019 CCRCC WXS blood_normal CPT0189070002 CPT0189070002.WholeExome.RP-1303.bam 25546971489 BAM submitted_aligned CPTAC3 2aa91659-7885-42e8-8097-9e6818402d61 7ba597e8493dc90e4ea108863182222d {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03019.WXS.N.hg38 C3N-03019 CCRCC WXS blood_normal CPT0189070002 6e1b1c10-87e8-47aa-b657-fbe0dc1fc448_wxs_gdc_realn.bam 34860217744 BAM harmonized CPTAC3 9a821f9e-e230-491b-a21d-f60c665392d0 13edddb5e090d9bd0dae6ccc23f3662a {"aliquot_tag": "ALQ_15efa8d4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03019.WXS.T C3N-03019 CCRCC WXS tumor CPT0189030006 CPT0189030006.WholeExome.RP-1303.bam 26348815519 BAM submitted_aligned CPTAC3 f8282b62-0b48-4c8c-9200-0260a72c360f e15cd4bccbbe7f2fc043ebccbed8cb01 {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03019.WXS.T.hg38 C3N-03019 CCRCC WXS tumor CPT0189030006 f1f65a12-c36b-4484-b54f-97bb2abd5bc6_wxs_gdc_realn.bam 36734687198 BAM harmonized CPTAC3 8083d1cb-0ee9-453a-a4a2-77354a28f686 d2321f266672e41e2e157ec5f7b2a2ff {"aliquot_tag": "ALQ_e702ca0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.MethArray.Green.T C3N-03020 CCRCC Methylation_Array tumor CPT0189080011 203220070151_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 755f52bc-2281-4829-b99a-e8cf13abfcc7 92e9c2a4f8aab5456b1eeba8cce02e7b {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.MethArray.Red.T C3N-03020 CCRCC Methylation_Array tumor CPT0189080011 203220070151_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 6fa21eb2-57b4-40cb-91ac-67528b54cffe c99af308908491d35aefc2b743d1a603 {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.miRNA-Seq.S42_L005_R1.T C3N-03020 CCRCC miRNA-Seq tumor CPT0189080009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAATCG_S42_L005_R1_001.unaln.bam 170871592 BAM S42_L005_R1 submitted_unaligned CPTAC3 e99dc000-8fd4-434a-a4db-f1542912374f 2766dd79d16ca85c6fb060ea455e95bb {"aliquot_tag": "ALQ_6de68d", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.miRNA-Seq.T.hg38 C3N-03020 CCRCC miRNA-Seq tumor CPT0189080009 e8acf01d-03f5-48c7-8745-7956334c5b8f_mirnaseq_gdc_realn.bam 190636064 BAM harmonized CPTAC3 123a1c23-3a00-445f-b956-b44ba9e8d5b3 d26d5ae91102251bed133f37e156b3bd {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.RNA-Seq.chimeric.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.chimeric.gdc_realn.bam 37197408 BAM chimeric harmonized CPTAC3 7c576f96-092c-4e8f-b1ba-29f8c1b6403e cc26fcd997756220388773083a41b675 {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.RNA-Seq.genomic.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.genomic.gdc_realn.bam 7678429446 BAM genomic harmonized CPTAC3 61d80ab5-1f61-497f-88ac-41e08a5eb91f 65faaa94cd206733b43cdf811af9b626 {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.RNA-Seq.S2_L001_R1.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3608929328 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 850eedab-8759-45ec-9839-185f0ccd0f4d 7ea4a9c7949dd9f0c7df5c592aac0dc2 {"aliquot_tag": "ALQ_6de68d", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.RNA-Seq.S2_L001_R2.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3686692454 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 ed56c706-12d3-4109-8738-fe891ed8e99f 5a08a0ab735b4646ca1e68e4af2f98fe {"aliquot_tag": "ALQ_6de68d", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.RNA-Seq.transcriptome.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.transcriptome.gdc_realn.bam 9489851615 BAM transcriptome harmonized CPTAC3 e7192cb7-4266-42e2-bec5-50186ab65f00 0f44576fc7fff9a313c8e9a8e01536ab {"aliquot_tag": "ALQ_6de68d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.WGS.N C3N-03020 CCRCC WGS blood_normal CPT0189100002 CPT0189100002.WholeGenome.RP-1303.bam 76296759120 BAM submitted_aligned CPTAC3 308c6796-4678-4518-b6d8-fa41ef257c7e ae02bca4dd163decc22933d5bbcd071f {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03020.WGS.N.hg38 C3N-03020 CCRCC WGS blood_normal CPT0189100002 bf26c019-5a7f-4c24-a45c-593978962201_wgs_gdc_realn.bam 111352753437 BAM harmonized CPTAC3 45243d21-3eea-4d0b-b64a-740753ea401e 76cc19ae594dc2bed320b68e0966183e {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03020.WGS.T C3N-03020 CCRCC WGS tumor CPT0189080011 CPT0189080011.WholeGenome.RP-1303.bam 55359168645 BAM submitted_aligned CPTAC3 cd661a21-071f-475b-bb7e-29744e80ce61 a40b49a7a5bf787e52af06cb6d5678df {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.WGS.T.hg38 C3N-03020 CCRCC WGS tumor CPT0189080011 4e8d8f7b-c47f-4a48-8752-154599c839dc_wgs_gdc_realn.bam 81042190771 BAM harmonized CPTAC3 c921fef0-0951-431c-aad2-9ba2531bd543 22f572de983dedb651832d411b7cbfdc {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.WXS.N C3N-03020 CCRCC WXS blood_normal CPT0189100002 CPT0189100002.WholeExome.RP-1303.bam 20890593864 BAM submitted_aligned CPTAC3 74c1cd43-5777-41ca-95a8-4b236d25adc6 7efe1b1ae91860efcfd2a36eeec27295 {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03020.WXS.N.hg38 C3N-03020 CCRCC WXS blood_normal CPT0189100002 bf26c019-5a7f-4c24-a45c-593978962201_wxs_gdc_realn.bam 29116026429 BAM harmonized CPTAC3 70297bb3-bb0c-4b9a-96f5-31806b7a1b58 9e9c69f809e630c8117f0a8252260fdb {"aliquot_tag": "ALQ_6c93a761", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03020.WXS.T C3N-03020 CCRCC WXS tumor CPT0189080011 CPT0189080011.WholeExome.RP-1303.bam 25045763865 BAM submitted_aligned CPTAC3 2016195e-ca1f-411b-a789-c5a2cf0eb151 00d8bdd824a2030eb505856966df1413 {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03020.WXS.T.hg38 C3N-03020 CCRCC WXS tumor CPT0189080011 4e8d8f7b-c47f-4a48-8752-154599c839dc_wxs_gdc_realn.bam 34581282758 BAM harmonized CPTAC3 7cc1df79-0914-4a83-9c07-58ba57415ae1 13f1c5ab4d46ac2c6f2fc3d7bc3c71b5 {"aliquot_tag": "ALQ_17ad5ffe", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03021.MethArray.Green.A C3N-03021 CCRCC Methylation_Array tissue_normal CPT0189120009 204930630084_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dd94e318-9a04-46b6-9e7f-c045d633597b 48f9087326a830b8c3ac3304e04d49ba {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.MethArray.Green.T C3N-03021 CCRCC Methylation_Array tumor CPT0189110006 203219650098_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 9af6f753-2c50-4015-b88b-e61ee939f41e e84e87c89f8df29a8e04befd5d6b77e3 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.MethArray.Red.A C3N-03021 CCRCC Methylation_Array tissue_normal CPT0189120009 204930630084_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 4669603b-dae2-407d-bb9e-06fefc8cbd0f 4bad5408fd03d1bb8f7d9d31b512814e {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.MethArray.Red.T C3N-03021 CCRCC Methylation_Array tumor CPT0189110006 203219650098_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 65206781-9cd3-494a-b18c-1abd0041f196 6061204c55df2f09def6ad83ea293da1 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.miRNA-Seq.A.hg38 C3N-03021 CCRCC miRNA-Seq tissue_normal CPT0189120006 ce634d6c-fbec-4a3d-a96b-034b8fd3fc17_mirnaseq_gdc_realn.bam 260719789 BAM harmonized CPTAC3 fd82f28a-14b8-4aec-a0cc-7e2c5104bbec 8e0e56b09d44ad035ec80b2d3a1f3445 {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.miRNA-Seq.S41_L002_R1.A C3N-03021 CCRCC miRNA-Seq tissue_normal CPT0189120006 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTTGA_S41_L002_R1_001.unaln.bam 234033103 BAM S41_L002_R1 submitted_unaligned CPTAC3 c3484f89-6c50-49c0-9756-edb1786b214b e30e6958bd661ece35ced6534a137908 {"aliquot_tag": "ALQ_113e3018", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.miRNA-Seq.S43_L005_R1.T C3N-03021 CCRCC miRNA-Seq tumor CPT0189110009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L005_R1_001.unaln.bam 163276088 BAM S43_L005_R1 submitted_unaligned CPTAC3 f008427e-3472-4dc5-8cb3-7b42cbe5c624 f01575e490725cc3a050638f42dda88c {"aliquot_tag": "ALQ_c6215759", "sample": "S43", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.miRNA-Seq.T.hg38 C3N-03021 CCRCC miRNA-Seq tumor CPT0189110009 a6f1e532-baae-42d5-8e2d-19c2db219a73_mirnaseq_gdc_realn.bam 179401149 BAM harmonized CPTAC3 9cd0f0d6-4755-4388-94c4-3447a81a009e b45b4e908b5814e51e41fe1214d95e9c {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.RNA-Seq.chimeric.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.chimeric.gdc_realn.bam 107375767 BAM chimeric harmonized CPTAC3 aecd657d-89a3-4689-a668-879305658b25 ee128e65695149984e0a0b707d2c9eaf {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.RNA-Seq.chimeric.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.chimeric.gdc_realn.bam 40447748 BAM chimeric harmonized CPTAC3 2ff06647-dc27-4a28-8dab-56aa5f77ca0b de20ab49c982a0f80162b36eee1b52b8 {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.RNA-Seq.genomic.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.genomic.gdc_realn.bam 9732399630 BAM genomic harmonized CPTAC3 1c09849d-ac18-4082-8d27-cf92e2d3df86 37ad5bdaa655c9c67ff6f9d4f55ffdf4 {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.RNA-Seq.genomic.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.genomic.gdc_realn.bam 8771857657 BAM genomic harmonized CPTAC3 d567af39-3ecb-485d-9f22-9677bfe617f5 dbb923b64479f0959a0cdb82b1fa5b24 {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.RNA-Seq.S16_L004_R1.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R1_001.fastq.gz 4544145184 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 419649c5-5daf-48a5-b179-71bee81c3e37 7adcf76d629c56e41afce94a7751dc4a {"aliquot_tag": "ALQ_113e3018", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.RNA-Seq.S16_L004_R2.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R2_001.fastq.gz 4999382702 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 f5f94a34-6065-4e26-b24c-4786bdabc87d 97315e9ff110b5c355280734b9f230c5 {"aliquot_tag": "ALQ_113e3018", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.RNA-Seq.S1_L001_R1.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4423006156 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 8fd114d3-7cba-4e69-a64e-21f71e0e3be6 f8442af33ee1a24195147eb2f9564c9a {"aliquot_tag": "ALQ_c6215759", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.RNA-Seq.S1_L001_R2.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4770379674 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 27aa231e-944d-41fb-9d71-18a2d029842a 2b849af786be3f8b707bbc8e2a310922 {"aliquot_tag": "ALQ_c6215759", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.RNA-Seq.transcriptome.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.transcriptome.gdc_realn.bam 10878897700 BAM transcriptome harmonized CPTAC3 6b964d8a-01eb-49de-aba4-1860f27c6940 c1e5bbf2de16fa6fdeaf8b28709d6a2a {"aliquot_tag": "ALQ_113e3018", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.RNA-Seq.transcriptome.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.transcriptome.gdc_realn.bam 12642806829 BAM transcriptome harmonized CPTAC3 5fee6850-8035-4a08-a1ae-b7eb85e26a4f 3d0a39cec65aacd5878bbbbbd28b1a92 {"aliquot_tag": "ALQ_c6215759", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.WGS.N C3N-03021 CCRCC WGS blood_normal CPT0189150002 CPT0189150002.WholeGenome.RP-1303.bam 133904478666 BAM submitted_aligned CPTAC3 1f2b920c-6f2f-4850-a039-0e044d2826a5 e5473de744eb55a1a6146d16d0d26ee6 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03021.WGS.N.hg38 C3N-03021 CCRCC WGS blood_normal CPT0189150002 3cd7cad6-a799-402a-864c-fd700781a8d4_wgs_gdc_realn.bam 194355992259 BAM harmonized CPTAC3 27a12993-a3db-4b26-b58a-fddafe23c594 94ce42db82592e21c94017a753415408 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03021.WGS.T C3N-03021 CCRCC WGS tumor CPT0189110006 CPT0189110006.WholeGenome.RP-1303.bam 68293717111 BAM submitted_aligned CPTAC3 f662d034-475b-4223-9fac-dbf2d4627514 991c91e2d5154df2d0e0589b92f7fb86 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.WGS.T.hg38 C3N-03021 CCRCC WGS tumor CPT0189110006 d1d0580d-8da1-47d0-9fc4-ee5ab4a79a09_wgs_gdc_realn.bam 98949335862 BAM harmonized CPTAC3 d25dbf22-373f-4166-ac02-cf62d7e9dec0 d2a451665ebec9c7db5c46822ae8792f {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.WXS.A C3N-03021 CCRCC WXS tissue_normal CPT0189120009 CPT0189120009.WholeExome.RP-1303.bam 22810169840 BAM submitted_aligned CPTAC3 543fd08f-8293-4a04-825b-44244b2aad6f 26ce52f86a0d081b1b470d73d1377a65 {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.WXS.A.hg38 C3N-03021 CCRCC WXS tissue_normal CPT0189120009 b82c29a7-28b3-45c5-bac9-e211d4b25886_wxs_gdc_realn.bam 31495092970 BAM harmonized CPTAC3 0b9bcff2-7075-4dc5-95dc-92adde1ee3b1 fd640dd3d3774f0af164f0571159a7aa {"aliquot_tag": "ALQ_81812d89", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03021.WXS.N C3N-03021 CCRCC WXS blood_normal CPT0189150002 CPT0189150002.WholeExome.RP-1303.bam 25017255752 BAM submitted_aligned CPTAC3 c2d70fec-41a9-4984-994f-08ed4a6f4dd9 a15a4983d3cc2fc76fd19263a1d055b7 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03021.WXS.N.hg38 C3N-03021 CCRCC WXS blood_normal CPT0189150002 3cd7cad6-a799-402a-864c-fd700781a8d4_wxs_gdc_realn.bam 34507895561 BAM harmonized CPTAC3 caa89110-0ea5-4d7e-883f-a9fdece28dbc ad45968a948ad4f282dabf323cb9d151 {"aliquot_tag": "ALQ_a4732811", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03021.WXS.T C3N-03021 CCRCC WXS tumor CPT0189110006 CPT0189110006.WholeExome.RP-1303.bam 31693723676 BAM submitted_aligned CPTAC3 17569d1d-e108-41f1-9530-7dcc1b9242ae 36c10659f481e57fc7c4e414b0f11feb {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03021.WXS.T.hg38 C3N-03021 CCRCC WXS tumor CPT0189110006 d1d0580d-8da1-47d0-9fc4-ee5ab4a79a09_wxs_gdc_realn.bam 44926095416 BAM harmonized CPTAC3 32ae7a7b-7039-4a7f-ac55-80c2055fc084 ae2fe7ed8a835c376a14109ac98d1918 {"aliquot_tag": "ALQ_569e4ac8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.MethArray.Green.T C3N-03025 GBM Methylation_Array tumor CPT0225840006 204367490151_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 3ab25546-7312-4706-9a9f-b649f293dbc7 6eb0f7337b61819acca71f59b3cda064 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.MethArray.Red.T C3N-03025 GBM Methylation_Array tumor CPT0225840006 204367490151_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 a4753ba6-da60-4003-add0-76333a79aefd 5a56bb76142cd244c94ce69d31f579eb {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.miRNA-Seq.S45_L002_R1.T C3N-03025 GBM miRNA-Seq tumor CPT0225840009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 252024670 BAM S45_L002_R1 submitted_unaligned CPTAC3 6528718f-4883-44ce-9c34-afa8cd8e42fc 46e396b4211575b784e9786e78295254 {"aliquot_tag": "ALQ_4623c398", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.miRNA-Seq.T.hg38 C3N-03025 GBM miRNA-Seq tumor CPT0225840009 ea60a154-98b8-4db7-8be8-17e4b8be7d27_mirnaseq_gdc_realn.bam 281649400 BAM harmonized CPTAC3 8595b7ac-8a46-4859-bd04-100da74c51b1 544467b2a4a26d386e2b4159e2932505 {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.RNA-Seq.chimeric.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.chimeric.gdc_realn.bam 26792283 BAM chimeric harmonized CPTAC3 c618ec8f-070a-4598-8390-f8257d9cf1b4 c775162e08255582a6e9611242201b1b {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.RNA-Seq.genomic.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.genomic.gdc_realn.bam 7021881399 BAM genomic harmonized CPTAC3 f2ea2f6a-ecb8-4e79-94d6-ccb96ae3efdf e280962fd7b31936583fe7cbdba0fd7c {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.RNA-Seq.S13_L004_R1.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R1_001.fastq.gz 3206199920 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 6a12152f-6b09-4e4b-87a2-deac64ea83a1 7af7d029b5f85c979d54acde55db043c {"aliquot_tag": "ALQ_4623c398", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.RNA-Seq.S13_L004_R2.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 7ff9e556-fa20-4d91-8dc9-b02275783e96 53f472cb8808a3126bd6f5ce40f7ce57 {"aliquot_tag": "ALQ_4623c398", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.RNA-Seq.transcriptome.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.transcriptome.gdc_realn.bam 7483372515 BAM transcriptome harmonized CPTAC3 f392c768-c6de-45ca-8c92-763802c4724a 1710fc539e4046c251a400f042f9fd9a {"aliquot_tag": "ALQ_4623c398", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.WGS.N C3N-03025 GBM WGS blood_normal CPT0225860002 CPT0225860002.WholeGenome.RP-2158.bam 25773776013 BAM submitted_aligned CPTAC3 59fa4708-fd8f-4566-9d94-f62826f236be a00f5117d3b637515b9b0aa4c2924b89 {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03025.WGS.N.hg38 C3N-03025 GBM WGS blood_normal CPT0225860002 e7c50500-cae7-47da-be3b-86c64714d880_wgs_gdc_realn.bam 76319967086 BAM harmonized CPTAC3 17dc03a1-1c8b-464e-b09e-4c6824d6ae7d d80f2fcbb813fb1394e0f80d6e7ead9a {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03025.WGS.T C3N-03025 GBM WGS tumor CPT0225840006 CPT0225840006.WholeGenome.RP-2158.bam 27751823683 BAM submitted_aligned CPTAC3 fee1ecb4-d543-4fe1-acca-0bd9270d3a36 2c64fa5e3439eee3a7342734a675b557 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.WGS.T.hg38 C3N-03025 GBM WGS tumor CPT0225840006 db572b5f-fd90-4c8b-8609-1e5cd0c44585_wgs_gdc_realn.bam 82837102023 BAM harmonized CPTAC3 6e5ce309-2ebb-46ee-abf4-570a730bc5b8 a7d5b83ba8442c9e923a5f852b5659c8 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.WXS.N C3N-03025 GBM WXS blood_normal CPT0225860002 CPT0225860002.WholeExome.RP-1303.bam 25504805473 BAM submitted_aligned CPTAC3 5dcf63ed-7c2c-4759-8060-988e9dd64f99 cb34d0ca7dc61e53a147a2f0fefe5b0a {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03025.WXS.N.hg38 C3N-03025 GBM WXS blood_normal CPT0225860002 e7c50500-cae7-47da-be3b-86c64714d880_wxs_gdc_realn.bam 35098451486 BAM harmonized CPTAC3 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 ade7fbaf753c1e8b59dd0128101f922a {"aliquot_tag": "ALQ_ab314970", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03025.WXS.T C3N-03025 GBM WXS tumor CPT0225840006 CPT0225840006.WholeExome.RP-1303.bam 18505020552 BAM submitted_aligned CPTAC3 b5e8f3a9-dad6-4e6d-ba0a-a5b93814283f e438bf5d539579033441d4d01f24168b {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor CPT0225840006 db572b5f-fd90-4c8b-8609-1e5cd0c44585_wxs_gdc_realn.bam 26254017188 BAM harmonized CPTAC3 325ed822-683e-457a-9687-2ade3fcd0bfe a8712edffd2b32ea7d69930f401c4093 {"aliquot_tag": "ALQ_d69cde09", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03026.MethArray.Green.A C3N-03026 GBM Methylation_Array tissue_normal CPT0404650013 205555390119_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4849d1ac-a065-4486-bdd3-eb2cf61006d8 10c2da8ecbf8f197328ec7aa489a5f78 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.MethArray.Red.A C3N-03026 GBM Methylation_Array tissue_normal CPT0404650013 205555390119_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 b422de53-d1ac-4a06-a500-7ba88df3e850 90b431cca9fad09ac303cc353013ac94 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.miRNA-Seq.A.hg38 C3N-03026 GBM miRNA-Seq tissue_normal CPT0404650017 7ceab83d-57f4-46d6-8116-a6c8a2933401_mirnaseq_gdc_realn.bam 239978338 BAM harmonized CPTAC3 cc6695f9-a8e0-4137-bedf-d4a544e6ed53 1e4a7be2999604683407858385017eb5 {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.miRNA-Seq.S35_L005_R1.A C3N-03026 GBM miRNA-Seq tissue_normal CPT0404650017 210702_UNC32-K00270_0289_AHKJ22BBXY_TACAGC_S35_L005_R1_001.unaln.bam 220513139 BAM S35_L005_R1 submitted_unaligned CPTAC3 0e6c36db-afd8-4696-9f50-a36274ce757b e29d3fcafa8212de093e7a2326054df8 {"aliquot_tag": "ALQ_28a2e25d", "sample": "S35", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.RNA-Seq.chimeric.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.chimeric.gdc_realn.bam 365619377 BAM chimeric harmonized CPTAC3 be858ea5-891c-420b-8390-1561f0a51953 87ec29fa0df5f3b24204a30c0eef04f3 {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.RNA-Seq.genomic.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.genomic.gdc_realn.bam 9699464204 BAM genomic harmonized CPTAC3 c6ecf701-e71d-422a-ad03-e1c1b6795206 fafc49a5dc8ee7ac80f53f599a538c8c {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.RNA-Seq.S13_L004_R1.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 b8a62a5dc8e5969533713554b3a0959d {"aliquot_tag": "ALQ_28a2e25d", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.RNA-Seq.S13_L004_R2.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R2_001.fastq.gz 4747391657 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 f826f72f-036c-4802-869d-9f33a5289ab1 1cc240055156257381563c8f511362aa {"aliquot_tag": "ALQ_28a2e25d", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.RNA-Seq.transcriptome.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.transcriptome.gdc_realn.bam 11692960445 BAM transcriptome harmonized CPTAC3 dc1a1002-7cf7-4c09-bbc7-6ea16aa50134 7a4ae39ae9debfe289fffe940a299ea5 {"aliquot_tag": "ALQ_28a2e25d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.WXS.A C3N-03026 GBM WXS tissue_normal CPT0404650013 CPT0404650013.WholeExome.RP-1303.bam 30030352752 BAM submitted_aligned CPTAC3 ce8bd00b-7413-437c-b0cc-06a5aced75dc 97bceeb9941b87bad6bd20879c12fda7 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03026.WXS.A.hg38 C3N-03026 GBM WXS tissue_normal CPT0404650013 af48f613-b720-40f7-b1b7-24b7b0be0a06_wxs_gdc_realn.bam 41574964277 BAM harmonized CPTAC3 7d2e1f0f-fce0-44d3-b58d-acbeeebb462a 725e43442caedd1daa3c101139cdbe91 {"aliquot_tag": "ALQ_2fcf2644", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-03026.WXS.N C3N-03026 GBM WXS blood_normal CPT0404820002 CPT0404820002.WholeExome.RP-1303.bam 28972194720 BAM submitted_aligned CPTAC3 8bbc8a8e-daa0-4414-afad-656d4b7c1b8a df90041c089251a1044abab53b85f6db {"aliquot_tag": "ALQ_c9f99af3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03026.WXS.N.hg38 C3N-03026 GBM WXS blood_normal CPT0404820002 5eb34dcc-45f8-4e79-a928-68f21c1e1da2_wxs_gdc_realn.bam 40280714342 BAM harmonized CPTAC3 21123e7d-d623-4cbe-b9dc-78011ba2735a a7ed172c69a873a050a41163b004a527 {"aliquot_tag": "ALQ_c9f99af3", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-03027.MethArray.Green.A C3N-03027 HNSCC Methylation_Array tissue_normal CPT0226400006 203273200073_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f565bc41-7c7f-4bd6-8fe8-a35f960803f0 4e0709ed2adc352c4d8fde4aed75ac2b {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.MethArray.Green.T C3N-03027 HNSCC Methylation_Array tumor CPT0226390006 203281980258_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 b00ab547-4b45-4d7c-8d76-07cbc0ce7153 57946de3e9b9741a641c907d27836a78 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.MethArray.Red.A C3N-03027 HNSCC Methylation_Array tissue_normal CPT0226400006 203273200073_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 15d1b5e2-aef4-4eef-96f5-f539ae92840a 2eecff86ecf1b02fddb881d2e485f270 {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.MethArray.Red.T C3N-03027 HNSCC Methylation_Array tumor CPT0226390006 203281980258_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 07010183-8fe0-4a6c-9e58-6175724f1515 5a460ed44929a0bce651fd5e67934e44 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.miRNA-Seq.A.hg38 C3N-03027 HNSCC miRNA-Seq tissue_normal CPT0226400009 17c3c6f2-def0-4baa-9647-25d19f30c7fd_mirnaseq_gdc_realn.bam 274641307 BAM harmonized CPTAC3 ed47ca1d-b848-4dd2-a176-cb5f36c8335d 95755e000c0c8fb8deae530f2e7c5012 {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.miRNA-Seq.S48_L004_R1.T C3N-03027 HNSCC miRNA-Seq tumor CPT0226390009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGGCA_S48_L004_R1_001.unaln.bam 212686696 BAM S48_L004_R1 submitted_unaligned CPTAC3 2a9fafb8-ba4c-4371-afb1-6522c5f2003e 5f50bff963767a73f9b1ec5b117284ca {"aliquot_tag": "ALQ_e59ced77", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.miRNA-Seq.S8_L005_R1.A C3N-03027 HNSCC miRNA-Seq tissue_normal CPT0226400009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L005_R1_001.unaln.bam 239398662 BAM S8_L005_R1 submitted_unaligned CPTAC3 af84c87c-3e92-4641-9c65-4f9b3b4fd577 fa04d21e17f3f8e49aead4a54c4de260 {"aliquot_tag": "ALQ_f589bfbe", "sample": "S8", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.miRNA-Seq.T.hg38 C3N-03027 HNSCC miRNA-Seq tumor CPT0226390009 ea14ce9d-2520-4983-bd7a-db0dad253856_mirnaseq_gdc_realn.bam 235076198 BAM harmonized CPTAC3 5b8314db-4696-4b5f-9e36-be7fcea538c6 b1cc3f92c0dc5f92ac5c9ce65168a95b {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.RNA-Seq.chimeric.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.chimeric.gdc_realn.bam 90096204 BAM chimeric harmonized CPTAC3 515cc5fa-82c7-40a9-8a43-585ec50df5cc 8c80150b9dd07f0be45d650cba7311fb {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.RNA-Seq.chimeric.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.chimeric.gdc_realn.bam 113942877 BAM chimeric harmonized CPTAC3 2c60ad8a-9733-42a7-aaef-d9e3e2ff7906 1cbc3e175db6e189020882dfcfc47867 {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.RNA-Seq.genomic.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.genomic.gdc_realn.bam 8448028061 BAM genomic harmonized CPTAC3 74e94848-3611-4bab-a962-b82926d353a0 24f944afeeba0793a064c253691739cf {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.RNA-Seq.genomic.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.genomic.gdc_realn.bam 7371910238 BAM genomic harmonized CPTAC3 0d16d629-f4da-4820-8b9d-07853a388516 3d5847bc4b25d8ae6a8e8f395d07420a {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.RNA-Seq.S19_L004_R1.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R1_001.fastq.gz 3993517750 FASTQ S19_L004_R1 submitted_unaligned CPTAC3 212c3ae2-25f3-42ff-9df4-567f823a9622 d89c0ac952966a02b3bec271db070193 {"aliquot_tag": "ALQ_f589bfbe", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.RNA-Seq.S19_L004_R2.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R2_001.fastq.gz 4507638946 FASTQ S19_L004_R2 submitted_unaligned CPTAC3 c5bff23b-a4d8-40b5-8db1-c15a8d8ea583 aa8d061c2033bdaf6c1dc84d356225c7 {"aliquot_tag": "ALQ_f589bfbe", "sample": "S19", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.RNA-Seq.S25_L007_R1.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R1_001.fastq.gz 3445859327 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 d729d0ae-e78c-464b-956e-8447d557d8ad caa99ced6c250314034cabed25e80b9e {"aliquot_tag": "ALQ_e59ced77", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.RNA-Seq.S25_L007_R2.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R2_001.fastq.gz 3942588207 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 a31eb8da-0b6c-4a97-872c-9ee4869bb9b0 d1df7c7bd2a911f7aa3f2cd17a12bc59 {"aliquot_tag": "ALQ_e59ced77", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.RNA-Seq.transcriptome.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.transcriptome.gdc_realn.bam 11859864076 BAM transcriptome harmonized CPTAC3 a9e62e01-10c6-4e4e-980f-a2c1b7d39820 297663a8574b81d119ac073312c82ad7 {"aliquot_tag": "ALQ_f589bfbe", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.RNA-Seq.transcriptome.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.transcriptome.gdc_realn.bam 9750475450 BAM transcriptome harmonized CPTAC3 41b8fb07-bfe5-40b4-a67e-6364f8722e92 b9629589318fee8f20a753c1e1d836af {"aliquot_tag": "ALQ_e59ced77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.WGS.N C3N-03027 HNSCC WGS blood_normal CPT0226430002 CPT0226430002.WholeGenome.RP-1303.bam 70198489101 BAM submitted_aligned CPTAC3 edced534-7501-4c4b-8b2b-d7f2be9930dc e5637e134c4b551eb698819d9d3fb9b1 {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03027.WGS.N.hg38 C3N-03027 HNSCC WGS blood_normal CPT0226430002 39c6f609-8cf9-41db-a099-8959f1dcd941_wgs_gdc_realn.bam 100125629101 BAM harmonized CPTAC3 61899a8a-9726-4e04-8e6b-0199df765363 c4b0a8cda3de7db9aa192d025c86fede {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03027.WGS.T C3N-03027 HNSCC WGS tumor CPT0226390006 CPT0226390006.WholeGenome.RP-1303.bam 64826852061 BAM submitted_aligned CPTAC3 beb0d683-b788-4ec1-a953-77e3cf0edcd9 c96bcf13b46299b9c4a9b549d663fb9f {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.WGS.T.hg38 C3N-03027 HNSCC WGS tumor CPT0226390006 ea4b6a06-e797-44d8-bc6d-51842c8a6450_wgs_gdc_realn.bam 95275924109 BAM harmonized CPTAC3 859e535e-a1c4-44db-9fc4-0917c3fe99f3 eaff4e301eb179b0d87077cd374fad97 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.WXS.A C3N-03027 HNSCC WXS tissue_normal CPT0226400006 CPT0226400006.WholeExome.RP-1303.bam 24217340191 BAM submitted_aligned CPTAC3 3045bdd0-0e69-4b47-86ed-d608ce654530 adc138ce1197621c873f9bcf8d9f5624 {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.WXS.A.hg38 C3N-03027 HNSCC WXS tissue_normal CPT0226400006 9b0e2afe-d4a9-430d-b1da-12ead8fca7cd_wxs_gdc_realn.bam 34031625389 BAM harmonized CPTAC3 c0a0d108-3417-46fc-b59b-c3cb31e715e0 1d9381139be92737a11bbf2856e77da9 {"aliquot_tag": "ALQ_6536a22f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03027.WXS.N C3N-03027 HNSCC WXS blood_normal CPT0226430002 CPT0226430002.WholeExome.RP-1303.bam 30239393952 BAM submitted_aligned CPTAC3 f0d2a85f-c6db-454d-be62-54e3a20dba00 622cd7089e99eeb335eb265fead695fc {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03027.WXS.N.hg38 C3N-03027 HNSCC WXS blood_normal CPT0226430002 39c6f609-8cf9-41db-a099-8959f1dcd941_wxs_gdc_realn.bam 41758740267 BAM harmonized CPTAC3 595ef8ef-53ca-42eb-9920-ffa1946341cd 80a5fb053e1126687329def105769bf7 {"aliquot_tag": "ALQ_25fb1ce6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03027.WXS.T C3N-03027 HNSCC WXS tumor CPT0226390006 CPT0226390006.WholeExome.RP-1303.bam 22933200179 BAM submitted_aligned CPTAC3 d774f06b-c773-44a5-9eaa-bd2d08714f2e 37cb1902ebeb9953109679fb61e500a2 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03027.WXS.T.hg38 C3N-03027 HNSCC WXS tumor CPT0226390006 ea4b6a06-e797-44d8-bc6d-51842c8a6450_wxs_gdc_realn.bam 31193978000 BAM harmonized CPTAC3 0ec542a1-2297-4c52-8d4d-3049209346c3 7486ea4817885c600f4f5566c0340b87 {"aliquot_tag": "ALQ_7523f0e6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.MethArray.Green.A C3N-03028 HNSCC Methylation_Array tissue_normal CPT0226450006 203281980258_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 5ada9f38-448c-4088-9408-4d9d8b9aad7c 5946aa0ca4bc4a86106e5fbed5983317 {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.MethArray.Green.T C3N-03028 HNSCC Methylation_Array tumor CPT0226440006 203220070165_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 77a5cf66-8317-46a1-b8dd-f0c42c826e73 77a31dbffcbba68358dbad83582752cc {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.MethArray.Red.A C3N-03028 HNSCC Methylation_Array tissue_normal CPT0226450006 203281980258_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 c563bd40-cd74-48e2-a147-665a7bfd12ab 5f8cd2dcfc5a6c720ac90184058c738f {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.MethArray.Red.T C3N-03028 HNSCC Methylation_Array tumor CPT0226440006 203220070165_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 f22d6480-b74a-4f82-9bdd-47a0ad8a699e abc520d798a436c2cb850776dda5f2d4 {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.miRNA-Seq.A.hg38 C3N-03028 HNSCC miRNA-Seq tissue_normal CPT0226450009 f9d430ec-d512-47e0-adb5-ee100a901b12_mirnaseq_gdc_realn.bam 201738769 BAM harmonized CPTAC3 1615dfff-cb17-4a76-8f30-a43a8212a82f b4596b2e9ef741da7ffa746a3837b418 {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.miRNA-Seq.S38_L004_R1.T C3N-03028 HNSCC miRNA-Seq tumor CPT0226440009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTAGCT_S38_L004_R1_001.unaln.bam 209690292 BAM S38_L004_R1 submitted_unaligned CPTAC3 0dbcf525-afa6-4506-9715-6dcb8b34d49b ff91f1c7ae8f6271d4ecce3bdcc24b26 {"aliquot_tag": "ALQ_9197e", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.miRNA-Seq.S9_L005_R1.A C3N-03028 HNSCC miRNA-Seq tissue_normal CPT0226450009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L005_R1_001.unaln.bam 175864758 BAM S9_L005_R1 submitted_unaligned CPTAC3 cb376ee3-8b46-4978-9000-579496cd4508 d85f03719c88916d9b7ee572828b78d0 {"aliquot_tag": "ALQ_3d6930ce", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.miRNA-Seq.T.hg38 C3N-03028 HNSCC miRNA-Seq tumor CPT0226440009 595a33f3-ab3a-417f-ae4e-ea24e760675c_mirnaseq_gdc_realn.bam 230172761 BAM harmonized CPTAC3 3cc7bc7d-eaa0-42b6-9295-9fd8d1e0726f 0c722df060650cd0b8454f57da70f990 {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.chimeric.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.chimeric.gdc_realn.bam 40894797 BAM chimeric harmonized CPTAC3 f16022d2-949c-4749-805e-bfead91a4977 00bc5575bbc53fad8ff4bf35df207425 {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.RNA-Seq.chimeric.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.chimeric.gdc_realn.bam 223304477 BAM chimeric harmonized CPTAC3 11b5cf2e-afce-41f9-bb11-38c7628ad344 5d5bae6466709ecb800ef7afa7f253fe {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.chimeric.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.chimeric.gdc_realn.bam 116452530 BAM chimeric harmonized CPTAC3 d12777f5-c478-4513-8936-5096b1b84169 493f9997d73cdce10267f57f58142ec1 {"aliquot_tag": "ALQ_57503f48", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.genomic.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.genomic.gdc_realn.bam 8875415733 BAM genomic harmonized CPTAC3 5e7be264-d857-400c-8258-90ecfc353f69 7dadada6db52dc56688f6387d23cdbaf {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.RNA-Seq.genomic.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.genomic.gdc_realn.bam 7599782885 BAM genomic harmonized CPTAC3 acf9261b-dd9c-4cf4-8e92-08776663cb6f a5bcb3b31297a9069bb79543e228164b {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.genomic.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.genomic.gdc_realn.bam 8426767444 BAM genomic harmonized CPTAC3 b2de53fc-186d-4cf3-87ab-617d9d14baaa c82da4847b5aab56019bb07f67bfe8f3 {"aliquot_tag": "ALQ_57503f48", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.S23_L005_R1.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R1_001.fastq.gz 4292062124 FASTQ S23_L005_R1 submitted_unaligned CPTAC3 e589e204-487c-4ad1-9ed0-15ad3d8f565a 00b7f1e9be12803541f136636aba7ff5 {"aliquot_tag": "ALQ_3d6930ce", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.RNA-Seq.S23_L005_R2.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R2_001.fastq.gz 4839193487 FASTQ S23_L005_R2 submitted_unaligned CPTAC3 de9b8504-9cad-405e-bffa-edf0edc2e46b fa0a217f34da6de67720920c305b36a5 {"aliquot_tag": "ALQ_3d6930ce", "sample": "S23", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.RNA-Seq.S27_R1.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R1_001.fastq.gz 5413787808 FASTQ S27_R1 submitted_unaligned CPTAC3 3a435eb7-6706-41a1-a5f2-8c6080856d46 017d0182226c6607514f23e397254b9c {"aliquot_tag": "ALQ_57503f48", "sample": "S27", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.S27_R2.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R2_001.fastq.gz 5603673239 FASTQ S27_R2 submitted_unaligned CPTAC3 5957e87c-5970-4b09-b925-00dfeee77970 0c8dd66ee046b421292756c87cf7f607 {"aliquot_tag": "ALQ_57503f48", "sample": "S27", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.S3_L001_R1.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R1_001.fastq.gz 3688150302 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 c55ba245-c1c7-474d-af54-0b0f24340d69 7c0e18a568b05dce0da8bfd974dbb8aa {"aliquot_tag": "ALQ_9197e", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.S3_L001_R2.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R2_001.fastq.gz 4025746235 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 42c126a1-fa33-4da7-8ad0-accd65e9eb71 9c02b2d35cb6ac6564127304b9ca2892 {"aliquot_tag": "ALQ_9197e", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.transcriptome.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.transcriptome.gdc_realn.bam 12544591955 BAM transcriptome harmonized CPTAC3 2e1c659e-e6d4-48ca-bdec-0376449d1831 45803ae88ea92681ebaabb49450ff6bc {"aliquot_tag": "ALQ_3d6930ce", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.RNA-Seq.transcriptome.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.transcriptome.gdc_realn.bam 10887984366 BAM transcriptome harmonized CPTAC3 da18e694-f46b-475d-a77f-9542d8bfe89e 8de32fdf0ccf2968e002266bd8b61129 {"aliquot_tag": "ALQ_9197e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.RNA-Seq.transcriptome.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.transcriptome.gdc_realn.bam 7560550611 BAM transcriptome harmonized CPTAC3 1ad3468b-7b10-4616-8ad2-efee47cdcebb a110b79727bd3eee44efcedbe733e272 {"aliquot_tag": "ALQ_57503f48", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.WGS.N C3N-03028 HNSCC WGS blood_normal CPT0226480002 CPT0226480002.WholeGenome.RP-1303.bam 64210983743 BAM submitted_aligned CPTAC3 d286d0a8-9527-4d7e-a94a-b3923251c602 64da8cd756d9cbcca9396c5f56ac69f5 {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03028.WGS.N.hg38 C3N-03028 HNSCC WGS blood_normal CPT0226480002 275fae68-cebf-4eb8-bcae-77fecf1ce314_wgs_gdc_realn.bam 94354767367 BAM harmonized CPTAC3 4343c2e2-fc91-4eb6-905c-0215cb187c78 9f57f2565d15948ec2cf90637fa483c0 {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03028.WGS.T C3N-03028 HNSCC WGS tumor CPT0226440006 CPT0226440006.WholeGenome.RP-1303.bam 79232751776 BAM submitted_aligned CPTAC3 5b9a7990-5a0d-4c7c-b419-cbafcefac28d 20fae92ffbd7dd08316bd2db4824c1e0 {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.WGS.T.hg38 C3N-03028 HNSCC WGS tumor CPT0226440006 f055a2f7-3889-4c7b-baf8-bada9b7989b4_wgs_gdc_realn.bam 112919181480 BAM harmonized CPTAC3 b45e6cd7-db3f-48a3-9a5e-d6ac5d4d3059 bba98d3c9fe0597551aabd0d18ce230e {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.WXS.A C3N-03028 HNSCC WXS tissue_normal CPT0226450006 CPT0226450006.WholeExome.RP-1303.bam 24742201631 BAM submitted_aligned CPTAC3 989c2f43-b6cc-4fa8-bb8a-35602f2c4525 d5f7a5488593e0badde59bb7cb3d7d45 {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.WXS.A.hg38 C3N-03028 HNSCC WXS tissue_normal CPT0226450006 0f6bdbc8-4d34-4af2-b4f6-b6174e3e5c7a_wxs_gdc_realn.bam 34318863093 BAM harmonized CPTAC3 ca57b686-70d5-4679-b007-615f02124b92 7092f0ff25f3da42c4a1c308ced1878f {"aliquot_tag": "ALQ_add62d5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03028.WXS.N C3N-03028 HNSCC WXS blood_normal CPT0226480002 CPT0226480002.WholeExome.RP-1303.bam 22078458920 BAM submitted_aligned CPTAC3 a0a493ad-6f3b-4d6b-8a0d-f23f0bba8848 3d13e738845be4ffc54c0b07f079339b {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03028.WXS.N.hg38 C3N-03028 HNSCC WXS blood_normal CPT0226480002 275fae68-cebf-4eb8-bcae-77fecf1ce314_wxs_gdc_realn.bam 29858297542 BAM harmonized CPTAC3 ef7578db-c8fe-41ce-be0c-25952fecf890 017e16bcb63b67f6ef56a2b102e615fd {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03028.WXS.T C3N-03028 HNSCC WXS tumor CPT0226440006 CPT0226440006.WholeExome.RP-1303.bam 39315266074 BAM submitted_aligned CPTAC3 80210fb0-2021-4dcd-9cd3-f5d78b5952cf 4a057bdea8fae811e3ded1217c30863b {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03028.WXS.T.hg38 C3N-03028 HNSCC WXS tumor CPT0226440006 f055a2f7-3889-4c7b-baf8-bada9b7989b4_wxs_gdc_realn.bam 54333068229 BAM harmonized CPTAC3 1a5979f7-587a-4af6-b6a4-c05e13b2b793 df5a3fbfd64d47dccdea5505501fd181 {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.MethArray.Green.A C3N-03038 LUAD Methylation_Array tissue_normal CPT0235100006 203561620162_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9b860841-fcda-48d9-ab10-4418d5d828d0 337efaa37776721885e958e635c7cf2f {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.MethArray.Green.T C3N-03038 LUAD Methylation_Array tumor CPT0235090006 203561450048_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 be5b28a4-6810-4452-a705-2629a6501127 cfe13fa4f88ec51fa16dc1ed58a6c8d7 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.MethArray.Red.A C3N-03038 LUAD Methylation_Array tissue_normal CPT0235100006 203561620162_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 9207ab98-3d85-40d1-b964-f14bf3f57086 280f80d7917d317a239ee48fb09b23be {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.MethArray.Red.T C3N-03038 LUAD Methylation_Array tumor CPT0235090006 203561450048_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 121cd284-0995-4ca5-bc1c-c65c9e249b33 e24964e0f8f0231a928c48852e57470a {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.miRNA-Seq.A.hg38 C3N-03038 LUAD miRNA-Seq tissue_normal CPT0235100009 a8e86484-a693-42cc-a77e-5920c2aec42a_mirnaseq_gdc_realn.bam 287330560 BAM harmonized CPTAC3 1806aac2-bec7-4961-851b-0b5fc99b81f4 77a85a0247a996c348cc2c1ae5ea670e {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.miRNA-Seq.S21_L004_R1.T C3N-03038 LUAD miRNA-Seq tumor CPT0235090009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTGAT_S21_L004_R1_001.unaln.bam 250753656 BAM S21_L004_R1 submitted_unaligned CPTAC3 409d0198-a8a0-455a-a61b-888898707528 c67ff6dd23ab024e16c640734677b436 {"aliquot_tag": "ALQ_9e4a85da", "sample": "S21", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.miRNA-Seq.S36_L007_R1.A C3N-03038 LUAD miRNA-Seq tissue_normal CPT0235100009 190712_UNC32-K00270_0192_BH7HL3BBXY_AGTCAA_S36_L007_R1_001.unaln.bam 254596591 BAM S36_L007_R1 submitted_unaligned CPTAC3 e868ee18-1e03-4947-85dc-9f6b6eb494b5 b1f9a5cf594018d352f5921753c94500 {"aliquot_tag": "ALQ_5806340e", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.miRNA-Seq.T.hg38 C3N-03038 LUAD miRNA-Seq tumor CPT0235090009 50c58581-6e17-45ab-93bc-cf8dec072d86_mirnaseq_gdc_realn.bam 273365279 BAM harmonized CPTAC3 9ae88f9d-d5c3-4c6a-bb8f-d277a33dddf2 8e3ab14882b7d5f5000dadd0a4200eb6 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.RNA-Seq.chimeric.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.chimeric.gdc_realn.bam 95018494 BAM chimeric harmonized CPTAC3 bda3058e-55bb-4dfa-b329-6a3631cdf3ea b4b605dde5281d56b66930a1d2c02347 {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.RNA-Seq.chimeric.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.chimeric.gdc_realn.bam 31696409 BAM chimeric harmonized CPTAC3 9f15e072-12ce-45a8-9f56-ce4e472d085f c9c1135269a93fc64dd490ec7d3e7fd9 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.RNA-Seq.genomic.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.genomic.gdc_realn.bam 11576999654 BAM genomic harmonized CPTAC3 4ae731c4-807a-4be0-aa39-2b9c1bf917bd 7f59829b2810b9294f3800a28ba3d784 {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.RNA-Seq.genomic.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.genomic.gdc_realn.bam 13770169439 BAM genomic harmonized CPTAC3 412bc08d-c275-4d1b-8917-a04581775cd2 71e3faabcfa3dfce10cc5a96f2df1c81 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.RNA-Seq.S11_L003_R1.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R1_001.fastq.gz 4435405137 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 931a6fb3-85a0-44e0-ad49-9b4d16117981 92e639577547d9ae6096cfc66803c35a {"aliquot_tag": "ALQ_5806340e", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.RNA-Seq.S11_L003_R2.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R2_001.fastq.gz 5074283143 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 e764d0bf-3f54-493c-b1d7-96ed53d5cf56 80c875ac3772eec6fdacd8ec12f23c5e {"aliquot_tag": "ALQ_5806340e", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.RNA-Seq.S29_L008_R1.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R1_001.fastq.gz 4244552340 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 4239c264-cf13-41ea-b256-fd8c66372843 3a4f40993e6504ccad12c9e124987221 {"aliquot_tag": "ALQ_9e4a85da", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.RNA-Seq.S29_L008_R2.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R2_001.fastq.gz 4650188230 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 59826fe8-e4f4-4f9a-9784-a5fccc914fe1 a049d7df49a16963ae6e8acdac52ec64 {"aliquot_tag": "ALQ_9e4a85da", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.RNA-Seq.transcriptome.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.transcriptome.gdc_realn.bam 10421659911 BAM transcriptome harmonized CPTAC3 2420294b-108e-433a-8993-668cee7e3f7b dce189b8700dda3830d36535717753a1 {"aliquot_tag": "ALQ_5806340e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.RNA-Seq.transcriptome.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.transcriptome.gdc_realn.bam 10139894158 BAM transcriptome harmonized CPTAC3 46379df9-1adb-4486-8bd8-493572d326ba ca1b20a99e7b3964060eaa924a407317 {"aliquot_tag": "ALQ_9e4a85da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.WGS.N C3N-03038 LUAD WGS blood_normal CPT0235210002 CPT0235210002.WholeGenome.RP-1303.bam 84117595905 BAM submitted_aligned CPTAC3 b7e1a5fb-c345-477b-a17a-06da3c069be9 b7e16d796e73aa0b23d4da257ed6ff97 {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03038.WGS.N.hg38 C3N-03038 LUAD WGS blood_normal CPT0235210002 1284ed6e-8d14-4e9a-939c-a4dd56937db9_wgs_gdc_realn.bam 122664877713 BAM harmonized CPTAC3 02c9e8e7-c588-4121-8138-201353f47b76 6aa410ec74d00355a66c1a643e1dd78d {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03038.WGS.T C3N-03038 LUAD WGS tumor CPT0235090006 CPT0235090006.WholeGenome.RP-1303.bam 77300608562 BAM submitted_aligned CPTAC3 eac6fe8d-e5cf-44d9-b17d-dd5c762ae6cc b20ec1d965aa18205e994f588e8f8fe9 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.WGS.T.hg38 C3N-03038 LUAD WGS tumor CPT0235090006 7472c3a9-9302-434c-964f-7b663effb58a_wgs_gdc_realn.bam 112046841252 BAM harmonized CPTAC3 7fa10f83-656c-4208-a47a-db5b018a7d98 5f91c31bde1b3420af2f3eb5d8315a4a {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.WXS.A C3N-03038 LUAD WXS tissue_normal CPT0235100006 CPT0235100006.WholeExome.RP-1303.bam 23263901628 BAM submitted_aligned CPTAC3 3222bb54-7865-4ac0-bf8a-500a17dd5e50 569a53018f63f2e5381306f70a94d1f0 {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.WXS.A.hg38 C3N-03038 LUAD WXS tissue_normal CPT0235100006 884a1f13-beaa-4c3b-94ca-d1d3ed2eaa50_wxs_gdc_realn.bam 32608458545 BAM harmonized CPTAC3 2a17a004-3342-4458-bb5c-ad3b78f90059 e5c773c2aaea6d693b9d5d26b96e707f {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03038.WXS.N C3N-03038 LUAD WXS blood_normal CPT0235210002 CPT0235210002.WholeExome.RP-1303.bam 28489169308 BAM submitted_aligned CPTAC3 8697ab30-fad6-4516-b4e2-f9603b98f4dc 489244637726c642540c458bfbd59a17 {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03038.WXS.N.hg38 C3N-03038 LUAD WXS blood_normal CPT0235210002 1284ed6e-8d14-4e9a-939c-a4dd56937db9_wxs_gdc_realn.bam 38375688093 BAM harmonized CPTAC3 b40344b5-78c8-4723-98f8-32c37906669e 6b1cea3f03b55efc66e2d3686fbd0dfc {"aliquot_tag": "ALQ_7420b698", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03038.WXS.T C3N-03038 LUAD WXS tumor CPT0235090006 CPT0235090006.WholeExome.RP-1303.bam 24806113471 BAM submitted_aligned CPTAC3 87e93713-3ed0-429f-ade3-5e28e0635c0e 564a2cab460476d78a5598446cfc65a6 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03038.WXS.T.hg38 C3N-03038 LUAD WXS tumor CPT0235090006 7472c3a9-9302-434c-964f-7b663effb58a_wxs_gdc_realn.bam 34099803127 BAM harmonized CPTAC3 569029ec-a77e-44ce-a7fa-3c53a9dd4bf4 8cfa5073c40f7ba4d80d57e4cf4e6c15 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.MethArray.Green.A C3N-03039 PDA Methylation_Array tissue_normal CPT0235260007 203561620053_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 60820c5a-1fea-4a1f-880f-baf1a4c831b2 89a44a595b9bb4c595f3b568b3c8a982 {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03039.MethArray.Green.T C3N-03039 PDA Methylation_Array tumor CPT0235230007 203561620089_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0628f2d1-90e4-47da-a685-5166f384cc65 30fb5e13a8edb1d5b306a472101aa41b {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.MethArray.Red.A C3N-03039 PDA Methylation_Array tissue_normal CPT0235260007 203561620053_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 1f4ec07f-8589-4478-9b4d-1b21890e61c6 1fb8bf486d7c54080233dc407c10b751 {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03039.MethArray.Red.T C3N-03039 PDA Methylation_Array tumor CPT0235230007 203561620089_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 1dbd6040-6bd5-4cb1-bfce-4d1de45827d1 d8e7ef8e9c0491c5f092f6142e30769e {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.miRNA-Seq.S22_L006_R1.T C3N-03039 PDA miRNA-Seq tumor CPT0235230010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L006_R1_001.unaln.bam 225601190 BAM S22_L006_R1 submitted_unaligned CPTAC3 c6b4737b-c848-47cb-b910-b1076a451b02 cfaf1449a306ad165ce5aca3bc7859ab {"aliquot_tag": "ALQ_f9f5b595", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.miRNA-Seq.T.hg38 C3N-03039 PDA miRNA-Seq tumor CPT0235230010 37cfa510-f15c-4ca1-945c-d28a08135833_mirnaseq_gdc_realn.bam 254273453 BAM harmonized CPTAC3 64fe912c-8559-472c-9319-2a13026bb38a e2c828b4d7c4e2e18d65ba4da7fbba7e {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.RNA-Seq.chimeric.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.chimeric.gdc_realn.bam 59981106 BAM chimeric harmonized CPTAC3 e27946bf-dfff-48b5-ad46-166327145c5f 3be9cd531ea4d7c923c451847a9b437b {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.RNA-Seq.genomic.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.genomic.gdc_realn.bam 7451327900 BAM genomic harmonized CPTAC3 3dca0aef-74f0-4056-b437-27cbbaf59c79 39e8d7d605bf5bac797d229a32c531f4 {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.RNA-Seq.S8_L002_R1.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R1_001.fastq.gz 3034627423 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 ef84b358-470b-4af0-9dce-4a1dcb142ce6 986d5cbafd5221aeee0624380005d0c0 {"aliquot_tag": "ALQ_f9f5b595", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.RNA-Seq.S8_L002_R2.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R2_001.fastq.gz 3375760731 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 e128176e-a4ee-41f5-92a0-222c59ba9e61 ba353a95717be65a065bb69ec0091c4c {"aliquot_tag": "ALQ_f9f5b595", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.RNA-Seq.transcriptome.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.transcriptome.gdc_realn.bam 8211371181 BAM transcriptome harmonized CPTAC3 9b87bdce-50f1-45f9-babb-125b4218c2af c2db02fddf677f140a091cfbc9354907 {"aliquot_tag": "ALQ_f9f5b595", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.WGS.N C3N-03039 PDA WGS blood_normal CPT0235410002 CPT0235410002.WholeGenome.RP-1303.bam 74506743405 BAM submitted_aligned CPTAC3 3fd72bc6-b77a-40bb-bfb9-22c2076e9689 8bc92e3c08383a75309b0847dfb828c6 {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03039.WGS.N.hg38 C3N-03039 PDA WGS blood_normal CPT0235410002 802fa2ab-54ca-4122-b40f-095afe4067f2_wgs_gdc_realn.bam 108088838640 BAM harmonized CPTAC3 f5dceafa-1a22-4787-81f9-466f00d3065a 7972d6e8d0bc9a315f25368a8a71767b {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03039.WGS.T C3N-03039 PDA WGS tumor CPT0235230007 CPT0235230007.WholeGenome.RP-1303.bam 118414702230 BAM submitted_aligned CPTAC3 ad4dd011-0ced-480a-8b57-861192980c65 3440f27f31f3b0c63c877ca5df999d21 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.WGS.T.hg38 C3N-03039 PDA WGS tumor CPT0235230007 6ad76d8b-98cb-4bdb-90d4-590e53505e20_wgs_gdc_realn.bam 170906564742 BAM harmonized CPTAC3 0ff7d20a-14f2-4543-b6ae-5ff1454f351b 49bccd118c0503077a21c113a2e53b01 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.WXS.A C3N-03039 PDA WXS tissue_normal CPT0235260007 CPT0235260007.WholeExome.RP-1303.bam 22292497475 BAM submitted_aligned CPTAC3 09109fa4-b066-4faf-93b4-1eaa9f7b291b 89b174a2220ed35c34e40dfe4739fabe {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03039.WXS.A.hg38 C3N-03039 PDA WXS tissue_normal CPT0235260007 212f0663-fc17-42f2-84c3-d566daeb2ca0_wxs_gdc_realn.bam 30058514302 BAM harmonized CPTAC3 148ac633-2db0-4d9f-a366-a2683850020c 5bcc96cdd442a80ffd1056db31361968 {"aliquot_tag": "ALQ_b66a9e07", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03039.WXS.N C3N-03039 PDA WXS blood_normal CPT0235410002 CPT0235410002.WholeExome.RP-1303.bam 22651766245 BAM submitted_aligned CPTAC3 d9275a14-c71f-425f-9b15-63858c102653 2e008be1821d4e2e7161f3730c412b0b {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03039.WXS.N.hg38 C3N-03039 PDA WXS blood_normal CPT0235410002 802fa2ab-54ca-4122-b40f-095afe4067f2_wxs_gdc_realn.bam 31410207874 BAM harmonized CPTAC3 b7c1b971-dfaa-4bd5-860c-590190910e48 648469eeb9cd83d4670ab02efde55748 {"aliquot_tag": "ALQ_a2795585", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03039.WXS.T C3N-03039 PDA WXS tumor CPT0235230007 CPT0235230007.WholeExome.RP-1303.bam 51692201427 BAM submitted_aligned CPTAC3 6a0f3106-32b5-4f6a-9720-7dce47820908 ed5f5e9646f0c8942228259429dfb265 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03039.WXS.T.hg38 C3N-03039 PDA WXS tumor CPT0235230007 6ad76d8b-98cb-4bdb-90d4-590e53505e20_wxs_gdc_realn.bam 71395114763 BAM harmonized CPTAC3 a494f53b-3928-4589-82c2-2124ae78f311 8800c407847ce8c5fe416b715e78ba60 {"aliquot_tag": "ALQ_7e8a1177", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.MethArray.Green.T C3N-03042 HNSCC Methylation_Array tumor CPT0235460006 203281980233_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 ae42d9c0-82d1-4eac-bf02-ce869fb0aeaf 229e1092ff1e8b06f7180719e725f981 {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.MethArray.Red.T C3N-03042 HNSCC Methylation_Array tumor CPT0235460006 203281980233_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 4d70e3b4-182e-460c-ab2f-703a73a6c0f6 386fec097344f40a6c795e05cf1c4ddb {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.miRNA-Seq.S36_L004_R1.T C3N-03042 HNSCC miRNA-Seq tumor CPT0235460009 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L004_R1_001.unaln.bam 198811768 BAM S36_L004_R1 submitted_unaligned CPTAC3 84ee3fac-ff68-447c-9154-bdf1fa5925c6 c887cbeb071c8038706bfb2f7b71fa5c {"aliquot_tag": "ALQ_878b501d", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.miRNA-Seq.T.hg38 C3N-03042 HNSCC miRNA-Seq tumor CPT0235460009 02fc3cc1-ca99-4ce9-b646-c6231ad87abe_mirnaseq_gdc_realn.bam 217547855 BAM harmonized CPTAC3 3a636f09-04b2-4181-b587-b729697be674 9592f9375857b3f985f5bec97bcbcf55 {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.chimeric.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.chimeric.gdc_realn.bam 245100968 BAM chimeric harmonized CPTAC3 720cf1e1-621b-4d79-97e9-c8f477f61690 239eda37d2409f8f62b77a393ed609a5 {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.chimeric.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.chimeric.gdc_realn.bam 177966654 BAM chimeric harmonized CPTAC3 95cec6c5-7204-4136-9655-a46ce40bf83f cfa2cf450c7045f9b8e1d6e7c7faba6a {"aliquot_tag": "ALQ_ae979c0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.genomic.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.genomic.gdc_realn.bam 7764578457 BAM genomic harmonized CPTAC3 074018e0-3535-430f-a10b-906e7946dc94 5f1f63bf2cbad2d1e1d08689c158c1ad {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.genomic.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.genomic.gdc_realn.bam 8468331913 BAM genomic harmonized CPTAC3 82232093-b113-4ff4-a4ec-200f0e0ea84c 18f7d2692ee01eec1300e8be26944374 {"aliquot_tag": "ALQ_ae979c0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.S3_L001_R1.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3714992070 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 a8e7a7c4-a050-4674-a800-478d690f2a78 20df2bc080400e87dd446f0e4d7e5008 {"aliquot_tag": "ALQ_878b501d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.S3_L001_R2.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4177672596 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 ada7577e-3e5c-4ab5-b817-bbdfbb5a5350 2d689efdf8895d1e2f3d5f0d9ed19e4f {"aliquot_tag": "ALQ_878b501d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.S48_R1.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R1_001.fastq.gz 5002596989 FASTQ S48_R1 submitted_unaligned CPTAC3 354207a4-a586-4047-844e-4f8e1ac91c8f 08fb862ba894bef28cf78281faf1088b {"aliquot_tag": "ALQ_ae979c0b", "sample": "S48", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.S48_R2.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R2_001.fastq.gz 5116311184 FASTQ S48_R2 submitted_unaligned CPTAC3 2e3adfb6-5e78-41c6-9d04-e433ae7a3e6d 70d465020bb43a4be8253c24584d1443 {"aliquot_tag": "ALQ_ae979c0b", "sample": "S48", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.transcriptome.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.transcriptome.gdc_realn.bam 11380213402 BAM transcriptome harmonized CPTAC3 2c041934-cee6-44d5-8c0c-fe500da61d9d 1f8f7025da7cfab29b95bb58b34f47fb {"aliquot_tag": "ALQ_878b501d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.RNA-Seq.transcriptome.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.transcriptome.gdc_realn.bam 4904081610 BAM transcriptome harmonized CPTAC3 6706bede-ff89-4939-bf7a-d6e1eb277b46 318ef462dbbcd097205c49aafe5d9037 {"aliquot_tag": "ALQ_ae979c0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.WGS.N C3N-03042 HNSCC WGS blood_normal CPT0235610002 CPT0235610002.WholeGenome.RP-1303.bam 76088853823 BAM submitted_aligned CPTAC3 5d3f1a67-596a-4b52-a516-d0205f00545c 851ea8bdd348d4e23d4ef84ba873a416 {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03042.WGS.N.hg38 C3N-03042 HNSCC WGS blood_normal CPT0235610002 d48dae04-e90c-461b-a8eb-80722051857c_wgs_gdc_realn.bam 110112924403 BAM harmonized CPTAC3 134fbb2b-6a53-4e4e-ae29-760e6bd8cbf5 f4264a63268a16d33b820f2a7fd333f5 {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03042.WGS.T C3N-03042 HNSCC WGS tumor CPT0235460006 CPT0235460006.WholeGenome.RP-1303.bam 84095863726 BAM submitted_aligned CPTAC3 ad471ebf-2aac-448c-8af4-bffa7f8658ec 02207c7afb217c0c462d35da458098c6 {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.WGS.T.hg38 C3N-03042 HNSCC WGS tumor CPT0235460006 385ba2e4-215b-41d3-898f-70ce3b49122a_wgs_gdc_realn.bam 134499741083 BAM harmonized CPTAC3 e77e0933-93ec-4d5b-b832-3e5e92bc3308 d42faf54abd19858ef60be08618c623d {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.WXS.N C3N-03042 HNSCC WXS blood_normal CPT0235610002 CPT0235610002.WholeExome.RP-1303.bam 23966606123 BAM submitted_aligned CPTAC3 4d343454-9a91-43fe-a190-6c4abb2909fe 5458fc3c9e950b31a06ead30def792be {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03042.WXS.N.hg38 C3N-03042 HNSCC WXS blood_normal CPT0235610002 d48dae04-e90c-461b-a8eb-80722051857c_wxs_gdc_realn.bam 33423811815 BAM harmonized CPTAC3 f100d754-c2c6-486e-ade6-263a0ac4a415 0c2040dd268b94c15bb5b130057dda90 {"aliquot_tag": "ALQ_efb1f48e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03042.WXS.T C3N-03042 HNSCC WXS tumor CPT0235460006 CPT0235460006.WholeExome.RP-1303.bam 25049510455 BAM submitted_aligned CPTAC3 e20fc429-b2a6-4f08-8aa3-460c4e83cf94 1dfeb77f7268dbb967794a658e9c4f64 {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03042.WXS.T.hg38 C3N-03042 HNSCC WXS tumor CPT0235460006 385ba2e4-215b-41d3-898f-70ce3b49122a_wxs_gdc_realn.bam 35970374203 BAM harmonized CPTAC3 78a89d30-eb59-4b4e-a7d5-50435b2c6740 61711870f441841dd49513c5785bdf5f {"aliquot_tag": "ALQ_17344d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03044.DUP_267c0fef.miRNA-Seq.S42_L002_R1.T C3N-03044 UCEC miRNA-Seq tumor CPT0235720023 190508_UNC31-K00269_0215_BH7FYKBBXY_TAATCG_S42_L002_R1_001.unaln.bam 210091631 BAM S42_L002_R1 submitted_unaligned CPTAC3 8c82c53b-a983-4195-9cd9-b238829d6631 b171fe7138b57e46389cbe36c352744f {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S42", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_267c0fef.miRNA-Seq.T.hg38 C3N-03044 UCEC miRNA-Seq tumor CPT0235720023 316f93ad-32ee-4eca-85ad-7624a099254a_mirnaseq_gdc_realn.bam 234302210 BAM harmonized CPTAC3 fee10f49-db41-4b77-bb89-2beb8381b06b 89d119f2572b7be61d26163a9f658824 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_267c0fef.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.chimeric.gdc_realn.bam 29624853 BAM chimeric harmonized CPTAC3 a9783d67-3a8f-4d77-8a43-56d01a594b8f 9ae37473d153539b869aa6edfacfb714 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_267c0fef.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.genomic.gdc_realn.bam 7211090689 BAM genomic harmonized CPTAC3 ffb60aad-8d42-4285-bdbd-ef10dfbd47b6 10b7d5e9a062d91d5a2f72a3903eb318 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_267c0fef.RNA-Seq.S28_L007_R1.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R1_001.fastq.gz 3372156198 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 7b67cfae-f36c-4ca8-9b52-fd13fd009f90 e47b0feab4321b61d7d8c16cfeac2d50 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_267c0fef.RNA-Seq.S28_L007_R2.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R2_001.fastq.gz 3731757645 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 ef49d83c-9edc-4fb2-a2e3-bd7193041582 0ca26d9fc23d30342a125173f7515eaf {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_267c0fef.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.transcriptome.gdc_realn.bam 9856639090 BAM transcriptome harmonized CPTAC3 668a34d9-d7d5-43e6-b901-4c1e8cbebc7d 00188dbbf64aaef3d463e12dbf44b185 {"aliquot_tag": "DUP_267c0fef", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_d44fd063.miRNA-Seq.S43_L002_R1.T C3N-03044 UCEC miRNA-Seq tumor CPT0235730040 190508_UNC31-K00269_0215_BH7FYKBBXY_TACAGC_S43_L002_R1_001.unaln.bam 258538636 BAM S43_L002_R1 submitted_unaligned CPTAC3 b0ce47a0-34c1-4f25-8b3e-9e67c9e88b55 0840bfc57b224ec03bc09209398e73aa {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S43", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_d44fd063.miRNA-Seq.T.hg38 C3N-03044 UCEC miRNA-Seq tumor CPT0235730040 a6ce9d45-7de2-4b03-9e27-8cf03a3c7b19_mirnaseq_gdc_realn.bam 285787402 BAM harmonized CPTAC3 7f99812a-52d1-4cf6-964f-2722684a857d 0fc9f8353e5b91bfd86127b7fb6f0bb3 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_d44fd063.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.chimeric.gdc_realn.bam 34022394 BAM chimeric harmonized CPTAC3 6f5349a7-01ec-4716-9d66-378104707102 d7b247860bce72ebb7b5aca3d584421e {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_d44fd063.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.genomic.gdc_realn.bam 8215362411 BAM genomic harmonized CPTAC3 7bbc3259-27db-4c43-9031-c8a09c615c56 bcb70f2e22072f92b175721e081c14f5 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_d44fd063.RNA-Seq.S27_L007_R1.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R1_001.fastq.gz 4112644391 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 635dfd92-32d9-4efd-b888-a90acda562f6 b23ec9e12de44f9b2e52c65e1a32d8c7 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_d44fd063.RNA-Seq.S27_L007_R2.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R2_001.fastq.gz 4608523488 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 74bc5cee-2633-4d27-ab8b-1ed835be5808 5e4e15f7ec635d3064962e27340b705a {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03044.DUP_d44fd063.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.transcriptome.gdc_realn.bam 12466738562 BAM transcriptome harmonized CPTAC3 645f2765-bc00-4732-8a2c-fd3dcfb1504d 8e26d09e4afa244f4c42ccad44f033f1 {"aliquot_tag": "DUP_d44fd063", "aliquot_annotation": "Duplicate item: UCEC BioTEXT Pilot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03045.MethArray.Green.T C3N-03045 HNSCC Methylation_Array tumor CPT0235910006 203219650096_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 84ea750a-d0b6-428a-9c6a-44b891c44746 a3eb270bedd6dd4c5bd7be6f15339b80 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.MethArray.Red.T C3N-03045 HNSCC Methylation_Array tumor CPT0235910006 203219650096_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 998daa5c-b485-461a-b7d6-7413156c0116 40948490138a05f063ad3116dfaaba87 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.miRNA-Seq.A.hg38 C3N-03045 HNSCC miRNA-Seq tissue_normal CPT0235920006 5230eeca-6296-48c9-a9ad-a968a819f68b_mirnaseq_gdc_realn.bam 382954467 BAM harmonized CPTAC3 3bf59241-d478-4e8e-bee0-17df9f05ac31 59ac90cfa629979a7e7f75382a8f5799 {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03045.miRNA-Seq.S138_L007_R1.A C3N-03045 HNSCC miRNA-Seq tissue_normal CPT0235920006 190828_UNC32-K00270_0200_BH7GVJBBXY_ATCACG_S138_L007_R1_001.unaln.bam 334514760 BAM S138_L007_R1 submitted_unaligned CPTAC3 e494a771-7ef6-43eb-901a-abb9aad58495 a08f6aa3fc980536c117ca9f72d7c3fe {"aliquot_tag": "ALQ_5e2af892", "sample": "S138", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03045.miRNA-Seq.S37_L004_R1.T C3N-03045 HNSCC miRNA-Seq tumor CPT0235910009 190228_UNC32-K00270_0151_AHYLY3BBXX_CGGAAT_S37_L004_R1_001.unaln.bam 187926835 BAM S37_L004_R1 submitted_unaligned CPTAC3 1077ed9b-1ade-4a32-ad88-febe07335d0d c457b0d552762ed7ee89112f61a5ba6d {"aliquot_tag": "ALQ_89359fd3", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.miRNA-Seq.T.hg38 C3N-03045 HNSCC miRNA-Seq tumor CPT0235910009 23232411-e126-4e4a-a591-87b97f95aabf_mirnaseq_gdc_realn.bam 213988587 BAM harmonized CPTAC3 12cc495e-5ec4-424d-9ca4-0cf8779e9273 d7d130b6e7b722f6627e692c30835f9a {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.chimeric.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.chimeric.gdc_realn.bam 39497922 BAM chimeric harmonized CPTAC3 850081a2-8ff9-4750-8166-3395671f9b69 a1e5becc3be5b610329fbae00242ef6a {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03045.RNA-Seq.chimeric.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.chimeric.gdc_realn.bam 190534477 BAM chimeric harmonized CPTAC3 ced596ab-f959-4476-aed7-ea43defb2401 d3ba14364f4647f0b8d43ca7dcfccfc0 {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.chimeric.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.chimeric.gdc_realn.bam 112401449 BAM chimeric harmonized CPTAC3 342f7790-247b-4790-a959-5310a518e6a4 b032f28da24f90b1a1bd21658a63805e {"aliquot_tag": "ALQ_e43575c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.genomic.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.genomic.gdc_realn.bam 8981648015 BAM genomic harmonized CPTAC3 842fb05c-af0a-4de6-98d2-92b30d830066 62ca06a452c4823ede74a63ae688f587 {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03045.RNA-Seq.genomic.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.genomic.gdc_realn.bam 7104796286 BAM genomic harmonized CPTAC3 b32d1b1b-6682-4a95-bc6a-3770daea0df0 6e742f402c6ff388273eff25adb625ad {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.genomic.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.genomic.gdc_realn.bam 10025747332 BAM genomic harmonized CPTAC3 cd414c5d-4d37-4c74-8182-1b87dda1e4a2 2a617e6d6772e70178cbbfb67e27d5f4 {"aliquot_tag": "ALQ_e43575c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.S14_L003_R1.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R1_001.fastq.gz 4300086770 FASTQ S14_L003_R1 submitted_unaligned CPTAC3 ad0e1d1d-2add-490c-9b4a-a42cbe1a700d 299eb0ecf37033410b66962ff2a1e644 {"aliquot_tag": "ALQ_5e2af892", "sample": "S14", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03045.RNA-Seq.S14_L003_R2.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R2_001.fastq.gz 4758883857 FASTQ S14_L003_R2 submitted_unaligned CPTAC3 528003dd-3a6c-47ba-9a80-2edc44c76635 c167ffdc7050c30c4e69c6290456cd73 {"aliquot_tag": "ALQ_5e2af892", "sample": "S14", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03045.RNA-Seq.S2_L001_R1.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3378039011 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 86e2ae86-9237-4ce6-a60c-c034295c61d9 e89107dceb832300ea18ca38d088d0c0 {"aliquot_tag": "ALQ_89359fd3", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.S2_L001_R2.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3750748630 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 0c8e7014-ca9c-4c89-a213-3a30d20ebbfe 5b0e4866a05c0f3624f422b6a5dd2873 {"aliquot_tag": "ALQ_89359fd3", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.S96_R1.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R1_001.fastq.gz 5494038736 FASTQ S96_R1 submitted_unaligned CPTAC3 84e55c55-19a1-40fc-aa30-6faf596b465b a3c0e5a7d385d78ef74da9a2a2724663 {"aliquot_tag": "ALQ_e43575c0", "sample": "S96", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.S96_R2.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R2_001.fastq.gz 5655919566 FASTQ S96_R2 submitted_unaligned CPTAC3 392d8056-5d1a-4fb0-9f81-5e93e32ea3f9 127cacba4c1e127e9b361f1eb2d07f8c {"aliquot_tag": "ALQ_e43575c0", "sample": "S96", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.transcriptome.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.transcriptome.gdc_realn.bam 13070985296 BAM transcriptome harmonized CPTAC3 80382b1d-7630-4f62-8f99-64fb4d2bd862 c78226e771001f5b885d5134bf6bde5a {"aliquot_tag": "ALQ_5e2af892", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03045.RNA-Seq.transcriptome.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.transcriptome.gdc_realn.bam 10972706223 BAM transcriptome harmonized CPTAC3 c5392695-267c-4bf3-a229-9b863b6cc7e2 344ace913325caa82a2ea38f770533bb {"aliquot_tag": "ALQ_89359fd3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.RNA-Seq.transcriptome.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.transcriptome.gdc_realn.bam 9109063769 BAM transcriptome harmonized CPTAC3 796420e7-93f6-410c-9bb0-72402258edf6 f676a53f2a24ce0898b3095d47530bc3 {"aliquot_tag": "ALQ_e43575c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.WGS.N C3N-03045 HNSCC WGS blood_normal CPT0235970002 CPT0235970002.WholeGenome.RP-1303.bam 68774900112 BAM submitted_aligned CPTAC3 3c7d7521-cab0-4536-8786-b9a982a0e4d5 5644231c4693ea76cc92b19b0f2bbaaf {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03045.WGS.N.hg38 C3N-03045 HNSCC WGS blood_normal CPT0235970002 10aa4de5-0954-48a0-8eb0-79762083515d_wgs_gdc_realn.bam 100490045496 BAM harmonized CPTAC3 e8adbc66-091f-40c5-bb73-d39fa938795a 3e841536b1ccb89f12ff4a7431f85d61 {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03045.WGS.T C3N-03045 HNSCC WGS tumor CPT0235910006 CPT0235910006.WholeGenome.RP-1303.bam 70038779528 BAM submitted_aligned CPTAC3 3b8fbddc-0ad5-4214-b892-f4294562cfb8 afaeadb3c42e57562c8bdb91860324de {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.WGS.T.hg38 C3N-03045 HNSCC WGS tumor CPT0235910006 4cc74c91-25c6-4051-b4ba-eee19c2858f4_wgs_gdc_realn.bam 106079190636 BAM harmonized CPTAC3 840d60f6-8ccd-4f02-8f64-c782c153ea83 926210744834b11c6de6c05c131af7cc {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.WXS.N C3N-03045 HNSCC WXS blood_normal CPT0235970002 CPT0235970002.WholeExome.RP-1303.bam 26031062930 BAM submitted_aligned CPTAC3 8faab433-24b5-4063-b318-14b0bc61d86f 23067af2671d48555b3313591e8630ed {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03045.WXS.N.hg38 C3N-03045 HNSCC WXS blood_normal CPT0235970002 10aa4de5-0954-48a0-8eb0-79762083515d_wxs_gdc_realn.bam 36660839497 BAM harmonized CPTAC3 1efc81ad-9da6-4eff-82c8-394b036b2ac3 dce72c37b50e3203d9add67fabc3558f {"aliquot_tag": "ALQ_91a7b3fb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03045.WXS.T C3N-03045 HNSCC WXS tumor CPT0235910006 CPT0235910006.WholeExome.RP-1303.bam 28007759868 BAM submitted_aligned CPTAC3 e481dadc-3dd3-40de-bdad-0a6a6dddfe80 78af473269cbaa180c6a0c794670c5a0 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03045.WXS.T.hg38 C3N-03045 HNSCC WXS tumor CPT0235910006 4cc74c91-25c6-4051-b4ba-eee19c2858f4_wxs_gdc_realn.bam 38901298782 BAM harmonized CPTAC3 1360dda0-8d3c-481a-b160-2d085bc4d219 7d86d861a4c4e4d472b5cc356eed37f0 {"aliquot_tag": "ALQ_198a8242", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.MethArray.Green.A C3N-03051 LSCC Methylation_Array tissue_normal CPT0208780006 203219670147_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 71433b74-b355-48ea-8443-a9c17b7d05e2 26efb2af5e3d6310558bdd27ed7362af {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.MethArray.Green.T C3N-03051 LSCC Methylation_Array tumor CPT0208770006 203219640068_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 4a774ad1-e877-45c3-809f-f15876d31e10 8f0c18a671fca1f473d87e31cdaa9f4f {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.MethArray.Red.A C3N-03051 LSCC Methylation_Array tissue_normal CPT0208780006 203219670147_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 76663216-3ba4-489f-915e-861c5e654bc1 345b35318319ff58e0996c043ea97ae9 {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.MethArray.Red.T C3N-03051 LSCC Methylation_Array tumor CPT0208770006 203219640068_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1e03397d-44de-4967-89e8-35967e65e281 aeb73a31a3a9aa976a5dea5db7b1e8ae {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.miRNA-Seq.A.hg38 C3N-03051 LSCC miRNA-Seq tissue_normal CPT0208780009 e954edf9-525f-4d7a-9bf1-28b065f63399_mirnaseq_gdc_realn.bam 224011853 BAM harmonized CPTAC3 c47ff7ec-3d02-431b-8c12-eeb4ac764e4c 2985395fc0b63b0af3b21d49ce2b1cf6 {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.miRNA-Seq.S3_L001_R1.T C3N-03051 LSCC miRNA-Seq tumor CPT0208770009 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGGCA_S3_L001_R1_001.unaln.bam 168110378 BAM S3_L001_R1 submitted_unaligned CPTAC3 5e202199-cdb9-4479-9514-2565612f7882 1195e3463d3e14535c445e17d2b31bd9 {"aliquot_tag": "ALQ_d3276d20", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.miRNA-Seq.S43_L004_R1.A C3N-03051 LSCC miRNA-Seq tissue_normal CPT0208780009 190206_UNC31-K00269_0191_AH2WY5BBXY_GCCAAT_S43_L004_R1_001.unaln.bam 198103722 BAM S43_L004_R1 submitted_unaligned CPTAC3 8ef14429-8291-4741-bd44-898ca9c471ab 9c0ad713f31d29394fb45b878145a69a {"aliquot_tag": "ALQ_5177faf1", "sample": "S43", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.miRNA-Seq.T.hg38 C3N-03051 LSCC miRNA-Seq tumor CPT0208770009 80fe1276-6f61-4e06-8197-e3595dfcbb44_mirnaseq_gdc_realn.bam 190249810 BAM harmonized CPTAC3 6ca5840c-f04b-4b0b-9031-4284ad47647b 9052be17e82aa45788e3e1c10288baf8 {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.RNA-Seq.chimeric.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.chimeric.gdc_realn.bam 172773100 BAM chimeric harmonized CPTAC3 b212c459-a154-4ada-951c-6fee34d2b11e ce9ac5e3d6180427da060c345c9eb0ad {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.RNA-Seq.chimeric.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.chimeric.gdc_realn.bam 110730853 BAM chimeric harmonized CPTAC3 f06fc7f1-cf44-4281-bed0-ab9ae4fb0f26 388e70c0daf89946090881bbab33773e {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.RNA-Seq.genomic.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.genomic.gdc_realn.bam 8373570435 BAM genomic harmonized CPTAC3 0cb8acde-7a63-45d5-bfad-810f8895d931 3cc995ca71aff966c0641faf06a46341 {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.RNA-Seq.genomic.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.genomic.gdc_realn.bam 8860363820 BAM genomic harmonized CPTAC3 29424dd8-53c2-4585-85af-589f43b6a665 5af8516fe57c0971dcd6470010ddc657 {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.RNA-Seq.S4_L001_R1.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4016798966 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 20589f37-506a-444f-ae0a-75610757188c cb1071549dc0a6be7eaa5adc84bd94e5 {"aliquot_tag": "ALQ_d3276d20", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.RNA-Seq.S4_L001_R2.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4386670675 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 f964c01f-7ed0-4593-b885-d6664e66a9d2 806db720e9207738fa3a0150170d8143 {"aliquot_tag": "ALQ_d3276d20", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.RNA-Seq.S6_L008_R1.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3960571449 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 331e2523-a47e-42a0-8ee6-1604987c2fe5 f30b0cbba70368553c5ee9c10fa3e65e {"aliquot_tag": "ALQ_5177faf1", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.RNA-Seq.S6_L008_R2.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4489845502 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 cd75c9e7-af96-432c-ac24-191a26c0c321 32fcc6241b0a3fb02796d9878825c801 {"aliquot_tag": "ALQ_5177faf1", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.RNA-Seq.transcriptome.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.transcriptome.gdc_realn.bam 10288730011 BAM transcriptome harmonized CPTAC3 abe6c5ff-36a6-4515-a7a9-462a9834c78b caa6870fdc601a2012bf80df31794ac2 {"aliquot_tag": "ALQ_5177faf1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.RNA-Seq.transcriptome.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.transcriptome.gdc_realn.bam 11424113226 BAM transcriptome harmonized CPTAC3 f65c95d3-2b30-4394-9bf2-5f21854d250e 725c1a009f25634eb967b45064cdafbb {"aliquot_tag": "ALQ_d3276d20", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.WGS.N C3N-03051 LSCC WGS blood_normal CPT0208820002 CPT0208820002.WholeGenome.RP-1303.bam 119987787419 BAM submitted_aligned CPTAC3 207090b0-9d22-493c-87b5-7194211a6170 9436946e9445a83ac2b96eadbc5a00a2 {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03051.WGS.N.hg38 C3N-03051 LSCC WGS blood_normal CPT0208820002 82120e94-1c95-43ec-8d66-2b7e80777cfc_wgs_gdc_realn.bam 173475741404 BAM harmonized CPTAC3 c5552d09-5af1-462f-9d39-acc70d4d4de2 f73fa5fbd801a05ecdde1d4d61efab91 {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03051.WGS.T C3N-03051 LSCC WGS tumor CPT0208770006 CPT0208770006.WholeGenome.RP-1303.bam 130121936448 BAM submitted_aligned CPTAC3 95120a79-6720-4dcb-af91-ad937b209f2f 4db3c3610818cad2bacd111b597cc770 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.WGS.T.hg38 C3N-03051 LSCC WGS tumor CPT0208770006 ad04e66f-3736-4e44-bded-696cf702868b_wgs_gdc_realn.bam 188951043592 BAM harmonized CPTAC3 cd5d9762-8fe4-4d55-9ff7-7ca679221f0e 84a03c49d7567a5380b62269be652c00 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.WXS.A C3N-03051 LSCC WXS tissue_normal CPT0208780006 CPT0208780006.WholeExome.RP-1303.bam 26916282191 BAM submitted_aligned CPTAC3 b40090f3-8b82-4286-81fa-d2e2bdce8b4f 69b3bffe8030b74848a6fa6305e433ca {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.WXS.A.hg38 C3N-03051 LSCC WXS tissue_normal CPT0208780006 bf19eeea-ff3a-4752-9ed7-e238a6904122_wxs_gdc_realn.bam 37735258375 BAM harmonized CPTAC3 9496d7cf-0952-4655-badb-8582940aa454 44deed1a3856200aa53b02c064fbeafc {"aliquot_tag": "ALQ_c1c8e760", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03051.WXS.N C3N-03051 LSCC WXS blood_normal CPT0208820002 CPT0208820002.WholeExome.RP-1303.bam 28285705412 BAM submitted_aligned CPTAC3 3c0af920-88da-47a5-8780-4ba9173c4b84 591b97de1ad4d36abaadc8ef959df6da {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03051.WXS.N.hg38 C3N-03051 LSCC WXS blood_normal CPT0208820002 82120e94-1c95-43ec-8d66-2b7e80777cfc_wxs_gdc_realn.bam 38168656678 BAM harmonized CPTAC3 6090b05d-fc6b-44c2-9a57-d29c1b19d00a bde52408f0e27b79a50e2075f967c3dc {"aliquot_tag": "ALQ_7d43890d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03051.WXS.T C3N-03051 LSCC WXS tumor CPT0208770006 CPT0208770006.WholeExome.RP-1303.bam 27144433918 BAM submitted_aligned CPTAC3 4186c8da-dea1-4339-a252-bffbc9d1f096 edb02365509eb443e51f20c55942b5e4 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03051.WXS.T.hg38 C3N-03051 LSCC WXS tumor CPT0208770006 ad04e66f-3736-4e44-bded-696cf702868b_wxs_gdc_realn.bam 37603582485 BAM harmonized CPTAC3 cba55a20-b692-4201-af3a-bac6f2d2d39c 9657f409f470c89fe7b8ed55ac62fd13 {"aliquot_tag": "ALQ_439870b1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.MethArray.Green.A C3N-03052 LUAD Methylation_Array tissue_normal CPT0236010007 203561620087_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 76d34181-a3e1-49ca-a362-7c57f8c7f515 99b8447a572b022567d592c9f0de3fb5 {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.MethArray.Green.T C3N-03052 LUAD Methylation_Array tumor CPT0236000012 203561620132_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 504a9610-6f8e-4734-9d33-d27d9f4deef1 41c68251b4fd93f0b7aa2879bca4b4bd {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.MethArray.Red.A C3N-03052 LUAD Methylation_Array tissue_normal CPT0236010007 203561620087_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 7c52a776-693e-4e79-b89a-e8c4826f5226 17062c1990bda7173afb110a7b283443 {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.MethArray.Red.T C3N-03052 LUAD Methylation_Array tumor CPT0236000012 203561620132_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 e8e0414b-c21b-4f12-9a43-0de4ae21d8ad 27238b66fb8a8ee587075d948c6f50f9 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.miRNA-Seq.S16_L003_R1.T C3N-03052 LUAD miRNA-Seq tumor CPT0236000019 190813_UNC32-K00270_0196_AH5MCWBBXY_CACGAT_S16_L003_R1_001.unaln.bam 293679585 BAM S16_L003_R1 submitted_unaligned CPTAC3 e6244bf5-2255-4158-bbae-390c94294047 344396b6b23733df9662df0e01f827fd {"aliquot_tag": "ALQ_bba9cc77", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.miRNA-Seq.T.hg38 C3N-03052 LUAD miRNA-Seq tumor CPT0236000019 5d619839-f14c-4c48-97eb-2ea070df4421_mirnaseq_gdc_realn.bam 325382742 BAM harmonized CPTAC3 a6dafdeb-44bb-4ca1-8dfa-85c390fcba45 f5b5c7855d4aa492c1f73e4b9349c7fa {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.RNA-Seq.chimeric.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.chimeric.gdc_realn.bam 38816293 BAM chimeric harmonized CPTAC3 b0334e94-b45c-4015-9d60-b95bc9914d13 b388f8597c5b16577a95785759f8d292 {"aliquot_tag": "ALQ_ff155d63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.RNA-Seq.chimeric.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.chimeric.gdc_realn.bam 41299994 BAM chimeric harmonized CPTAC3 4bf3d2fd-eae3-4126-add0-108122bb1e5d 4e7ee1c6fcb0d910cd2cbab27a36033a {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.RNA-Seq.genomic.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.genomic.gdc_realn.bam 8988046649 BAM genomic harmonized CPTAC3 043a56ee-d740-4d87-88cb-a7fa5e06d4a2 e32bd1c646232ad4d02fafa516c3dbc4 {"aliquot_tag": "ALQ_ff155d63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.RNA-Seq.genomic.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.genomic.gdc_realn.bam 10113450937 BAM genomic harmonized CPTAC3 d2e99242-7807-43e7-91b2-53874f08f1bd 5f920005fbd78c743783877e83132b76 {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.RNA-Seq.S12_L003_R1.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R1_001.fastq.gz 4594305201 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 13e423e6-3ec8-4dec-8706-a3c5fbf34991 2009a572201b3ff14ace1ba9f245733f {"aliquot_tag": "ALQ_ff155d63", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.RNA-Seq.S12_L003_R2.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R2_001.fastq.gz 4696624568 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 499b8af3-d4ce-4213-8d22-cf84b3a603c6 3830e01d04ac5f03e12519d60e636152 {"aliquot_tag": "ALQ_ff155d63", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.RNA-Seq.S25_L007_R1.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R1_001.fastq.gz 4687840121 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 dc08e710-d5b1-44c2-8fdd-8db211a15026 759a0024f9818c101c17860a3bade904 {"aliquot_tag": "ALQ_bba9cc77", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.RNA-Seq.S25_L007_R2.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R2_001.fastq.gz 5478049770 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 4375ab09-d71c-478a-bbd8-dea4d7355087 8cab340194f5dca2b283daf82ad296ce {"aliquot_tag": "ALQ_bba9cc77", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.RNA-Seq.transcriptome.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.transcriptome.gdc_realn.bam 11229824504 BAM transcriptome harmonized CPTAC3 b79831af-8d02-41ad-a32b-0ee041947d57 e099c56048cc2687c921ed3085081705 {"aliquot_tag": "ALQ_ff155d63", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.RNA-Seq.transcriptome.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.transcriptome.gdc_realn.bam 11361956841 BAM transcriptome harmonized CPTAC3 ab2d2cd7-e890-45aa-98b3-11bdf0b21796 4b707566d5da6d1876d62fb9b5b2f704 {"aliquot_tag": "ALQ_bba9cc77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.WGS.N C3N-03052 LUAD WGS blood_normal CPT0236050002 CPT0236050002.WholeGenome.RP-1303.bam 62386096801 BAM submitted_aligned CPTAC3 cb2277bd-3152-4c96-8481-4882be6b8f7e 74d02b0d9326e8305933b2e9c712fcfb {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03052.WGS.N.hg38 C3N-03052 LUAD WGS blood_normal CPT0236050002 1339bb46-f48f-4076-9d91-6fe4d07a4829_wgs_gdc_realn.bam 89532965838 BAM harmonized CPTAC3 4af30506-02d5-4cb4-8d62-41bd655953dd 6daa89f32b071ec0693b6e37096ec212 {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03052.WGS.T C3N-03052 LUAD WGS tumor CPT0236000012 CPT0236000012.WholeGenome.RP-1303.bam 63935047075 BAM submitted_aligned CPTAC3 9dccc65f-6ad3-4ac4-9825-8f74599e13ae 18013f3e01b021ff0d269109d003a7b1 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.WGS.T.hg38 C3N-03052 LUAD WGS tumor CPT0236000012 0d01cdc2-fbd8-497a-b026-d1c3206a5460_wgs_gdc_realn.bam 94784169817 BAM harmonized CPTAC3 6a3deaf9-3782-4853-a05b-9f8b1b491d7f a5cb841ce7a84de30083a8a81b9a01ce {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.WXS.A C3N-03052 LUAD WXS tissue_normal CPT0236010007 CPT0236010007.WholeExome.RP-1303.bam 23420315981 BAM submitted_aligned CPTAC3 1f282b10-f24f-4beb-a78d-3aba644db298 666a2d5d1e714984266ae49e815aa50c {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.WXS.A.hg38 C3N-03052 LUAD WXS tissue_normal CPT0236010007 020eac5c-ddd7-476b-98e8-63c777712152_wxs_gdc_realn.bam 31610092165 BAM harmonized CPTAC3 8d0b8f2a-8a20-4e41-8732-de355c5c766b b0f975bb1f75decb1238fc27b8b605f6 {"aliquot_tag": "ALQ_786af981", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03052.WXS.N C3N-03052 LUAD WXS blood_normal CPT0236050002 CPT0236050002.WholeExome.RP-1303.bam 28928625477 BAM submitted_aligned CPTAC3 1eb8112e-77bb-46fe-ba58-b99fb8272311 2d6910771ece56a8af77c297778f0a1e {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03052.WXS.N.hg38 C3N-03052 LUAD WXS blood_normal CPT0236050002 1339bb46-f48f-4076-9d91-6fe4d07a4829_wxs_gdc_realn.bam 39836429463 BAM harmonized CPTAC3 41101b08-d76a-45eb-8c3f-90b3cb000ae6 9ee2d79bc036a8fde874790b2fa28512 {"aliquot_tag": "ALQ_fd80abce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03052.WXS.T C3N-03052 LUAD WXS tumor CPT0236000012 CPT0236000012.WholeExome.RP-1303.bam 29671894680 BAM submitted_aligned CPTAC3 36391345-df74-4202-bd8a-3641804fab03 377e52255ad3886fb29fb836796ca8a5 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03052.WXS.T.hg38 C3N-03052 LUAD WXS tumor CPT0236000012 0d01cdc2-fbd8-497a-b026-d1c3206a5460_wxs_gdc_realn.bam 40319337640 BAM harmonized CPTAC3 3f756174-4416-4fa9-a819-2c32557bbcb1 849cb6003a368695669fe1d90ad74a01 {"aliquot_tag": "ALQ_2c7b15ff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.MethArray.Green.A C3N-03054 LUAD Methylation_Array tissue_normal CPT0236080006 203561620054_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e50635c2-f2a9-49e2-9f7d-17f5d3af9b85 1645e6d577404b70c08d43c9858e4754 {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.MethArray.Green.T C3N-03054 LUAD Methylation_Array tumor CPT0236060006 203561620054_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 31f44e17-f6e0-4d8c-96cb-9b335197e9ff c5407a9f5039cc6686ce24de8e563a49 {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.MethArray.Red.A C3N-03054 LUAD Methylation_Array tissue_normal CPT0236080006 203561620054_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 65122d3f-d345-45f9-8723-5edfaba53435 472ff9bf89b42d5c703e1e2b8188d30d {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.MethArray.Red.T C3N-03054 LUAD Methylation_Array tumor CPT0236060006 203561620054_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 c5adc01d-501c-4470-89f2-09a3646c4568 d1dfb852accd534bceeb0dbca9d4eb49 {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.miRNA-Seq.A.hg38 C3N-03054 LUAD miRNA-Seq tissue_normal CPT0236080009 ead04a07-ea49-4cc4-84e8-245109115a40_mirnaseq_gdc_realn.bam 244081600 BAM harmonized CPTAC3 e26f9000-7dfd-4363-a1b1-d24d836a166c 9db9e36496d2e90a4de231e6e3db24d5 {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.miRNA-Seq.S24_L006_R1.A C3N-03054 LUAD miRNA-Seq tissue_normal CPT0236080009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAACTA_S24_L006_R1_001.unaln.bam 211907738 BAM S24_L006_R1 submitted_unaligned CPTAC3 febd3d74-d96e-40ec-9937-004f300622c4 31df3c6e7db28dbc994d1385b0f39756 {"aliquot_tag": "ALQ_92c2b6f7", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.miRNA-Seq.S3_L007_R1.T C3N-03054 LUAD miRNA-Seq tumor CPT0236060009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGATC_S3_L007_R1_001.unaln.bam 218856075 BAM S3_L007_R1 submitted_unaligned CPTAC3 5d79d89e-10e7-4f9f-a06f-0350a0ee82cf 36f6f7af010ed008b51174224ef83569 {"aliquot_tag": "ALQ_2df20896", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.miRNA-Seq.T.hg38 C3N-03054 LUAD miRNA-Seq tumor CPT0236060009 8f375b5f-fc4c-4322-baed-c95e4c6403f8_mirnaseq_gdc_realn.bam 250436803 BAM harmonized CPTAC3 c5932700-6a8b-4e3f-99cc-98564dd0eed5 9944defa65d31833cb4ee58423b02adc {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.RNA-Seq.chimeric.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.chimeric.gdc_realn.bam 24764477 BAM chimeric harmonized CPTAC3 b0b0b8aa-5817-4215-b667-8d085160b5ce be6c097cc3a6ca1ef04fed823c9d2822 {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.RNA-Seq.chimeric.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.chimeric.gdc_realn.bam 37632979 BAM chimeric harmonized CPTAC3 bfc8546a-44f7-4173-8a30-17a819322974 7ea096193ff3fc9f8c1d3027d2781495 {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.RNA-Seq.genomic.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.genomic.gdc_realn.bam 9284619401 BAM genomic harmonized CPTAC3 cb5ddba0-abf7-4a03-a36c-c92de1e969b8 f973442f28147d12d7a1c6d45e80f50e {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.RNA-Seq.genomic.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.genomic.gdc_realn.bam 8564235339 BAM genomic harmonized CPTAC3 090cfaf4-7fa3-4224-b5dc-e66770a22542 98b131b14b35dbb72a783ef3c8c93493 {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.RNA-Seq.S17_L005_R1.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R1_001.fastq.gz 3652802470 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 e410c5c9-bd71-433e-a4a4-be0067125c38 b44bfa73d8d3134f4f12ac7df3b9b612 {"aliquot_tag": "ALQ_92c2b6f7", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.RNA-Seq.S17_L005_R2.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R2_001.fastq.gz 4053884389 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 6a9cea43-16ec-4a2c-a0f6-d6164247b8db 0974de0d1b8229a11e156516e65b6042 {"aliquot_tag": "ALQ_92c2b6f7", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.RNA-Seq.S5_L002_R1.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3824680817 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 13f9b89d-4863-4dae-9128-62d14a2411bf b8578cef465f55bb162ddb92c2704ce2 {"aliquot_tag": "ALQ_2df20896", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.RNA-Seq.S5_L002_R2.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 4347757368 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 6c788677-7c36-4449-9689-7fda08e3cdb9 769e9d002cda8f53e5fee09cc8719f6d {"aliquot_tag": "ALQ_2df20896", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.RNA-Seq.transcriptome.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.transcriptome.gdc_realn.bam 7455769052 BAM transcriptome harmonized CPTAC3 06f0e212-753b-4411-93ae-65aae197ff44 8edfefae6639ac0d364bc24e7fb7e148 {"aliquot_tag": "ALQ_92c2b6f7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.RNA-Seq.transcriptome.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.transcriptome.gdc_realn.bam 9317981648 BAM transcriptome harmonized CPTAC3 197d0eb9-2fa5-4564-8abb-8a7b68335b8e 67f5a1009d8e1ae7a407e85722fac776 {"aliquot_tag": "ALQ_2df20896", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.WGS.N C3N-03054 LUAD WGS blood_normal CPT0236120002 CPT0236120002.WholeGenome.RP-1303.bam 56226202704 BAM submitted_aligned CPTAC3 c09b3a32-2fd6-4014-80ea-8cac321c5d47 3d55bfba47c6941b39b8e000e71e4892 {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03054.WGS.N.hg38 C3N-03054 LUAD WGS blood_normal CPT0236120002 4d74aa49-29f0-4033-a036-95b2fef1a5eb_wgs_gdc_realn.bam 81749702103 BAM harmonized CPTAC3 2dfedb7e-a823-4d30-abde-ad168228f0a5 818ee43342dae5cee5f04f36e8156846 {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03054.WGS.T C3N-03054 LUAD WGS tumor CPT0236060006 CPT0236060006.WholeGenome.RP-1303.bam 76543221622 BAM submitted_aligned CPTAC3 2f90603d-0069-4e52-b033-cdaeb34e6db6 0a35dd6ad0e420a6b8f930852e5ad37e {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.WGS.T.hg38 C3N-03054 LUAD WGS tumor CPT0236060006 8ffbd07c-eec3-4a85-9a3b-f9755f6c152b_wgs_gdc_realn.bam 114445443833 BAM harmonized CPTAC3 15289633-b390-4d50-ac6b-7e80c44820fb 9e2b7b66f923690048298020f75cb6ce {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.WXS.A C3N-03054 LUAD WXS tissue_normal CPT0236080006 CPT0236080006.WholeExome.RP-1303.bam 21503492343 BAM submitted_aligned CPTAC3 5d8ae1fe-1f58-4578-b832-d8d1a57ac4ec 887b30b75f96e426060b166c8d342787 {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.WXS.A.hg38 C3N-03054 LUAD WXS tissue_normal CPT0236080006 b2505914-9985-42f4-a18e-0cf3581c2fa6_wxs_gdc_realn.bam 29923806546 BAM harmonized CPTAC3 e58c09bf-a860-410a-911c-1a923d0dcac4 d07c2c17fdba622cd20ef215103e340f {"aliquot_tag": "ALQ_27dab66", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03054.WXS.N C3N-03054 LUAD WXS blood_normal CPT0236120002 CPT0236120002.WholeExome.RP-1303.bam 29194749560 BAM submitted_aligned CPTAC3 14a7fe3e-c533-487a-9856-6c4bf11d6894 4240a1b9f571547a1cfbf6aa36bee2bf {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03054.WXS.N.hg38 C3N-03054 LUAD WXS blood_normal CPT0236120002 4d74aa49-29f0-4033-a036-95b2fef1a5eb_wxs_gdc_realn.bam 40369272139 BAM harmonized CPTAC3 46aff873-db64-4e7d-99ac-397f176840aa feacabf14a256dd9782d0309dd7e2e50 {"aliquot_tag": "ALQ_84fca47b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03054.WXS.T C3N-03054 LUAD WXS tumor CPT0236060006 CPT0236060006.WholeExome.RP-1303.bam 27857673488 BAM submitted_aligned CPTAC3 87e8ca3c-61b3-4ab8-be47-4a34355e87bc fe98c0db5cdd27de4c33078e6eb53d9a {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03054.WXS.T.hg38 C3N-03054 LUAD WXS tumor CPT0236060006 8ffbd07c-eec3-4a85-9a3b-f9755f6c152b_wxs_gdc_realn.bam 38521360150 BAM harmonized CPTAC3 16b3647f-a88d-4836-8f7d-d8dc9b96a133 392a1bd1ea0f44a3c98969ffe5b1a356 {"aliquot_tag": "ALQ_bd4d1507", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.MethArray.Green.T C3N-03057 LUAD Methylation_Array tumor CPT0236210006 203561620086_R03C01_Grn.idat 13676236 IDAT Green NA CPTAC3 14a064e2-be55-47a8-912f-978dadbd7d13 3d5c1ed15f0ddbcddf425a422e60aede {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.MethArray.Red.T C3N-03057 LUAD Methylation_Array tumor CPT0236210006 203561620086_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 732013b8-8d19-4385-b6fc-60c4f81911b5 cc216f61bc30f459e7ba3f1e1c90896d {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.miRNA-Seq.S4_L007_R1.T C3N-03057 LUAD miRNA-Seq tumor CPT0236210009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTTGA_S4_L007_R1_001.unaln.bam 189491000 BAM S4_L007_R1 submitted_unaligned CPTAC3 5b73ff17-7b20-40e8-b56d-2bcefe5de810 362e1dde63774b5d603064d6fd1563c0 {"aliquot_tag": "ALQ_d21a758d", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.miRNA-Seq.T.hg38 C3N-03057 LUAD miRNA-Seq tumor CPT0236210009 3dca75b2-5007-48fb-bf31-c8bdd6bd66f1_mirnaseq_gdc_realn.bam 210955119 BAM harmonized CPTAC3 facadada-b03d-4d1a-8537-af5dece95301 b0212653ec891f9cfd8258a01f5782e0 {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.RNA-Seq.chimeric.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.chimeric.gdc_realn.bam 47103982 BAM chimeric harmonized CPTAC3 eed70960-f0d4-4dcb-8e7e-987a62fb99bb 14f16acf463bae8973110dc902add05e {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.RNA-Seq.genomic.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.genomic.gdc_realn.bam 8872915038 BAM genomic harmonized CPTAC3 4fe2c93b-fc93-4020-8b95-960a5d372ff2 357f29be6286024c531e27f4824937a6 {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.RNA-Seq.S6_L002_R1.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R1_001.fastq.gz 4117551387 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 62175043-4989-4b17-b924-984a6039dc5a fa09cb9528f4c5e681948bdbbd311029 {"aliquot_tag": "ALQ_d21a758d", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.RNA-Seq.S6_L002_R2.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R2_001.fastq.gz 4572043529 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 167417a5-fae3-4559-93f0-b79a71b966ed 9d04185d9a9598d0b709a7fe4b85b4ad {"aliquot_tag": "ALQ_d21a758d", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.RNA-Seq.transcriptome.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.transcriptome.gdc_realn.bam 9041238320 BAM transcriptome harmonized CPTAC3 bf796fb3-25c6-44ec-b0af-d38e617b964f 967ebdc0bdc6a35ffdf04bf7d380f745 {"aliquot_tag": "ALQ_d21a758d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.WGS.N C3N-03057 LUAD WGS blood_normal CPT0236260002 CPT0236260002.WholeGenome.RP-1303.bam 95013890438 BAM submitted_aligned CPTAC3 c1bc7ccb-2389-4a58-ac3b-801ee5d9194d 01ca684b9a83ad939cb5f188b736988f {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03057.WGS.N.hg38 C3N-03057 LUAD WGS blood_normal CPT0236260002 dbc78993-2b74-482d-88be-8085ea35fee9_wgs_gdc_realn.bam 139535062846 BAM harmonized CPTAC3 5f6401d7-dd48-4d0b-9e30-47566d382272 9c54425c8e698984b7aeb1ef75db7dbb {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03057.WGS.T C3N-03057 LUAD WGS tumor CPT0236210006 CPT0236210006.WholeGenome.RP-1303.bam 65345440613 BAM submitted_aligned CPTAC3 7cba86f7-1983-47e7-a449-9d985527fcec 8d1e44762631a08fdcec43264a42e073 {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.WGS.T.hg38 C3N-03057 LUAD WGS tumor CPT0236210006 0c743dbe-f104-4309-abe2-29a749e9328e_wgs_gdc_realn.bam 95629349970 BAM harmonized CPTAC3 6b16d325-8ac5-4dc0-8e3a-cb2a8b807339 6d9502204786bfcfe7b95cc2a95fa21c {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.WXS.N C3N-03057 LUAD WXS blood_normal CPT0236260002 CPT0236260002.WholeExome.RP-1303.bam 26774701055 BAM submitted_aligned CPTAC3 d14cb662-e104-478c-a8e3-7e4a722bca5e 41d85379ae9121d3dd06474478d5f35a {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03057.WXS.N.hg38 C3N-03057 LUAD WXS blood_normal CPT0236260002 dbc78993-2b74-482d-88be-8085ea35fee9_wxs_gdc_realn.bam 37337114688 BAM harmonized CPTAC3 0bc74f87-946e-4776-9a12-bff546e43138 8b0116b708f12e0e774e665d7b213e71 {"aliquot_tag": "ALQ_f7e87015", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03057.WXS.T C3N-03057 LUAD WXS tumor CPT0236210006 CPT0236210006.WholeExome.RP-1303.bam 23230486075 BAM submitted_aligned CPTAC3 8f084ad4-9849-46ab-9028-e01208ef88a3 720eda7d676077a391904ed38ef988e6 {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03057.WXS.T.hg38 C3N-03057 LUAD WXS tumor CPT0236210006 0c743dbe-f104-4309-abe2-29a749e9328e_wxs_gdc_realn.bam 32037904421 BAM harmonized CPTAC3 5dc2e89c-6805-4326-80a8-9cad8ca53d03 e5e652e25fe204c41a0c27d01838f3ff {"aliquot_tag": "ALQ_42a5681c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.MethArray.Green.T C3N-03061 PDA Methylation_Array tumor CPT0208840014 203561620095_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1bb0c0a3-1941-436b-820e-28d08f739599 f278074d7934be1c80c512b5b0a9ead1 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.MethArray.Red.T C3N-03061 PDA Methylation_Array tumor CPT0208840014 203561620095_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 06a1ed36-2c0e-4b9c-ab7b-05a4065b6816 0d1f828d7b0707454717f49321c83a32 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.miRNA-Seq.S15_L003_R1.T C3N-03061 PDA miRNA-Seq tumor CPT0208840010 190813_UNC32-K00270_0196_AH5MCWBBXY_CACCGG_S15_L003_R1_001.unaln.bam 265404178 BAM S15_L003_R1 submitted_unaligned CPTAC3 5834b137-aefe-4645-a0e8-8fbf192b428b fcefe28a4d1e8b41cf38945417f6fe98 {"aliquot_tag": "ALQ_5162cc0", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.miRNA-Seq.T.hg38 C3N-03061 PDA miRNA-Seq tumor CPT0208840010 3df01264-380e-438a-819b-776cc5352a71_mirnaseq_gdc_realn.bam 296386745 BAM harmonized CPTAC3 15730021-257b-4556-a6c9-571aea8709a2 65de5dd5bd08c57a958e8d1ce258cdc8 {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.RNA-Seq.chimeric.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.chimeric.gdc_realn.bam 37536249 BAM chimeric harmonized CPTAC3 7eed3106-9a4d-411d-9fbc-fb1bc219d15b 1c0d6c73f24c001a18cc61fe3035dc55 {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.RNA-Seq.genomic.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.genomic.gdc_realn.bam 8824851869 BAM genomic harmonized CPTAC3 8f7f2473-6938-46f4-b2fc-71fc59512f5e 8c0188c1f4f1b245762691cfb08b5d5d {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.RNA-Seq.S21_L007_R1.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4295719121 FASTQ S21_L007_R1 submitted_unaligned CPTAC3 5e04a667-9083-4d39-9933-57dab9a65fd0 991af89cc0d25240e22aa89de3f93905 {"aliquot_tag": "ALQ_5162cc0", "sample": "S21", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.RNA-Seq.S21_L007_R2.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4700486391 FASTQ S21_L007_R2 submitted_unaligned CPTAC3 aa4e1900-2a03-4fa4-a3ad-64e9640d8160 6ce35f0c32875fde940a0b3e0e068242 {"aliquot_tag": "ALQ_5162cc0", "sample": "S21", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.RNA-Seq.transcriptome.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.transcriptome.gdc_realn.bam 12109701943 BAM transcriptome harmonized CPTAC3 5ee84d2d-96a9-481d-afa0-f2ef6580ebc8 d00f71e1585bc1890ba47ad6824cefc0 {"aliquot_tag": "ALQ_5162cc0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.WGS.N C3N-03061 PDA WGS blood_normal CPT0208890002 CPT0208890002.WholeGenome.RP-1303.bam 62473669927 BAM submitted_aligned CPTAC3 254f9980-94a6-4943-b695-9cd3916dc1d3 64b72b2fa0dd71a2beb7ff3540ddceb9 {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03061.WGS.N.hg38 C3N-03061 PDA WGS blood_normal CPT0208890002 6998726a-ed10-46cb-b237-c8d6e332e5e7_wgs_gdc_realn.bam 89283803102 BAM harmonized CPTAC3 6534b876-1ab0-4dad-83c2-261af7341360 cc7fd8075f63ae589b0f02d3ba51d4c6 {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03061.WGS.T C3N-03061 PDA WGS tumor CPT0208840014 CPT0208840014.WholeGenome.RP-1303.PDO-18613.bam 166698493212 BAM submitted_aligned CPTAC3 7b04381c-ae32-4424-8595-84c03b728c14 edf0a5146ba996f026210826ff2a6bb2 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.WGS.T.hg38 C3N-03061 PDA WGS tumor CPT0208840014 eb50829d-9b29-4da9-a8d5-f9e15bd7f912_wgs_gdc_realn.bam 242324119167 BAM harmonized CPTAC3 6fd35ed4-a7ab-42c5-bb92-354942df18b9 25b41f243ba00692663af3c4a86d6146 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.WXS.N C3N-03061 PDA WXS blood_normal CPT0208890002 CPT0208890002.WholeExome.RP-1303.bam 24951344555 BAM submitted_aligned CPTAC3 5188abd8-9cf2-4714-b355-c134241f2020 f9b770dc880b5ce7f788b708c08eeec1 {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03061.WXS.N.hg38 C3N-03061 PDA WXS blood_normal CPT0208890002 6998726a-ed10-46cb-b237-c8d6e332e5e7_wxs_gdc_realn.bam 33883001995 BAM harmonized CPTAC3 9770436b-43be-48f1-a7f1-fe75ba3d0668 b0a2e3ff1bb34894e62b71030856727c {"aliquot_tag": "ALQ_a93b81c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03061.WXS.T C3N-03061 PDA WXS tumor CPT0208840014 CPT0208840014.WholeExome.RP-1303.bam 30737077158 BAM submitted_aligned CPTAC3 2a9e465d-6069-4201-8dac-13a8fb2f6a59 96bfd2945e8781c5458c118f26fdf987 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03061.WXS.T.hg38 C3N-03061 PDA WXS tumor CPT0208840014 eb50829d-9b29-4da9-a8d5-f9e15bd7f912_wxs_gdc_realn.bam 41952668631 BAM harmonized CPTAC3 f558f892-5bc9-4660-8770-47c266908e1d 1ae5708b4c6da3d75fb0ef4f36819e05 {"aliquot_tag": "ALQ_27be8d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.MethArray.Green.A C3N-03063 LUAD Methylation_Array tissue_normal CPT0208920007 203561450025_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 741411fd-a0e5-4bd8-8ce6-b0a85e5416be 4cc57b2a6f699ee770be9c6b941624d5 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.MethArray.Green.T C3N-03063 LUAD Methylation_Array tumor CPT0208910007 203561450099_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6ec235b1-7c31-4389-a305-56494ce8efb9 11e71eb1781c2debe1ec10033f394884 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.MethArray.Red.A C3N-03063 LUAD Methylation_Array tissue_normal CPT0208920007 203561450025_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 1ad7c222-4dd7-47e2-af51-1a9ca431cb36 aa36cf2efadb64234d05c7ddf08c7f49 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.MethArray.Red.T C3N-03063 LUAD Methylation_Array tumor CPT0208910007 203561450099_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 130f24ae-c4ed-479e-b78c-930d59306515 39d3e783b4031477382df4c0788090e0 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.miRNA-Seq.A.hg38 C3N-03063 LUAD miRNA-Seq tissue_normal CPT0208920010 b6314644-a5b5-46fc-84cb-800d8dfcdfe9_mirnaseq_gdc_realn.bam 247863467 BAM harmonized CPTAC3 0562e8d9-ad83-4535-b1f7-3165d69781ca e3eb935d959ee6e9931d0a38c4151d70 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.miRNA-Seq.S160_L007_R1.A C3N-03063 LUAD miRNA-Seq tissue_normal CPT0208920010 190828_UNC32-K00270_0200_BH7GVJBBXY_GGTAGC_S160_L007_R1_001.unaln.bam 219662721 BAM S160_L007_R1 submitted_unaligned CPTAC3 70e92cdf-b3f6-4871-a831-8885df82c121 211333f63f025f5114d00db193254d35 {"aliquot_tag": "ALQ_410a0ac5", "sample": "S160", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.miRNA-Seq.S21_L006_R1.T C3N-03063 LUAD miRNA-Seq tumor CPT0208910010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCATTC_S21_L006_R1_001.unaln.bam 147526955 BAM S21_L006_R1 submitted_unaligned CPTAC3 d2ce06f2-6809-456a-aa76-1901cf4abd6a 177419d35e7833968df92d49c2a5c5f9 {"aliquot_tag": "ALQ_6aa7015", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.miRNA-Seq.T.hg38 C3N-03063 LUAD miRNA-Seq tumor CPT0208910010 2e7cb65b-db54-47b6-8ee3-ec100030a81b_mirnaseq_gdc_realn.bam 163917559 BAM harmonized CPTAC3 6312e993-1688-415c-a868-9a3e20b45f70 d0e4cf38f17b7a925e5226e5d3172baa {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.RNA-Seq.chimeric.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.chimeric.gdc_realn.bam 68857941 BAM chimeric harmonized CPTAC3 7a014b6b-9b76-401a-a6f2-b829a0e8535e 13d2d6855fb7e904116a92f99e18ade0 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.RNA-Seq.chimeric.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.chimeric.gdc_realn.bam 167767332 BAM chimeric harmonized CPTAC3 d479b632-bb3b-40ee-9f1d-a450c70a9ca9 a5d19eed0586ab44f090b678d0a566b6 {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.RNA-Seq.genomic.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.genomic.gdc_realn.bam 11149527663 BAM genomic harmonized CPTAC3 22249665-a46d-4106-9e42-c0cdf3585337 ab954792f634ed6ff88456e98a5fd2f3 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.RNA-Seq.genomic.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.genomic.gdc_realn.bam 10134629284 BAM genomic harmonized CPTAC3 4eebffe6-d390-446b-a0f6-0759e319e07a fc5e5d1ba7bf7078378bc7c4f2e4da5a {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.RNA-Seq.S25_L007_R1.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R1_001.fastq.gz 4806652605 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 b34eac8c-0f66-4a29-adaa-93b00a34356f 0290129186317ce5ca3320d18640bfb1 {"aliquot_tag": "ALQ_410a0ac5", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.RNA-Seq.S25_L007_R2.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R2_001.fastq.gz 5341927050 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 fa0a60df-c8c2-4710-8d1e-1434c60d0512 c7525919064ffce6e74416058040d1ee {"aliquot_tag": "ALQ_410a0ac5", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.RNA-Seq.S6_L002_R1.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 4109342753 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 6679fa70-dcae-4a8a-aec2-8bcf61fade91 302be9adbe9a6d1a7f7b1743be9c5b24 {"aliquot_tag": "ALQ_6aa7015", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.RNA-Seq.S6_L002_R2.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 4602913912 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 21ed5b07-a68c-4208-86c3-1ccc03374349 fd239be26851bea0717dfeb51ccfac2c {"aliquot_tag": "ALQ_6aa7015", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.RNA-Seq.transcriptome.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.transcriptome.gdc_realn.bam 11755174981 BAM transcriptome harmonized CPTAC3 aa40d1c3-a95b-4ee8-b7a5-a01678b90cc3 fb6118c6cd1f9f2a28e653ca19b1bb94 {"aliquot_tag": "ALQ_410a0ac5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.RNA-Seq.transcriptome.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.transcriptome.gdc_realn.bam 11093088150 BAM transcriptome harmonized CPTAC3 baabf1a6-2661-4ae7-b99b-5e917be63da6 7e2f5a42bb5c44d827bb1b4e21f93b1c {"aliquot_tag": "ALQ_6aa7015", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.WGS.N C3N-03063 LUAD WGS blood_normal CPT0208960002 CPT0208960002.WholeGenome.RP-1303.bam 65764363394 BAM submitted_aligned CPTAC3 bc694793-1d0b-4772-b8d7-c43fadd1e843 c0a0a89c0b1e9653400b96187f09e669 {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03063.WGS.N.hg38 C3N-03063 LUAD WGS blood_normal CPT0208960002 e875c90b-d033-49a9-9159-6e539fa1d1c8_wgs_gdc_realn.bam 97163534453 BAM harmonized CPTAC3 d0dd4cfa-981e-4a0f-a4bb-ecc7b7d0326e 096dd19a9d32193d09ae7bf4f82a5a1c {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03063.WGS.T C3N-03063 LUAD WGS tumor CPT0208910007 CPT0208910007.WholeGenome.RP-1303.bam 75325203299 BAM submitted_aligned CPTAC3 51153f88-f123-49ad-b797-429dcc767ff6 e2a399c39a5dbe8df2787d66f2efcd68 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.WGS.T.hg38 C3N-03063 LUAD WGS tumor CPT0208910007 8a9d825a-3b91-4f1d-9110-558ea8c262b7_wgs_gdc_realn.bam 114136149526 BAM harmonized CPTAC3 e6550309-ebc5-4d22-806b-5d55e2d9adf5 1c4459696e45a8e826ee60c3b06eb913 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.WXS.A C3N-03063 LUAD WXS tissue_normal CPT0208920007 CPT0208920007.WholeExome.RP-1303.bam 23294854400 BAM submitted_aligned CPTAC3 8f259b3b-0a7a-42fd-8065-0becf3bcfce1 83945d584599f3af93e7011f00282ca4 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.WXS.A.hg38 C3N-03063 LUAD WXS tissue_normal CPT0208920007 4f879453-e82e-422b-9e39-88f895315f68_wxs_gdc_realn.bam 32626060896 BAM harmonized CPTAC3 5bf3a387-00a0-4ef8-91e2-59a465b7804e 8a07a96a3d8865ffeb276e98eac2c831 {"aliquot_tag": "ALQ_c675ae27", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03063.WXS.N C3N-03063 LUAD WXS blood_normal CPT0208960002 CPT0208960002.WholeExome.RP-1303.bam 22728205338 BAM submitted_aligned CPTAC3 6862d583-11a9-4bf6-945d-5bc6f0e19867 4ab31593598d2c50f77771c81ee798d5 {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03063.WXS.N.hg38 C3N-03063 LUAD WXS blood_normal CPT0208960002 e875c90b-d033-49a9-9159-6e539fa1d1c8_wxs_gdc_realn.bam 31697549049 BAM harmonized CPTAC3 a4d6b0e1-8b70-4ec5-85df-86bea7aab1a4 137da9ae24f399b16373f4d72145c14d {"aliquot_tag": "ALQ_439ffc68", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03063.WXS.T C3N-03063 LUAD WXS tumor CPT0208910007 CPT0208910007.WholeExome.RP-1303.bam 21903229868 BAM submitted_aligned CPTAC3 60bd7cbd-9ab0-4b76-b66b-78e8c19db6e7 68da457786a695c6a87b8ecb78e97175 {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03063.WXS.T.hg38 C3N-03063 LUAD WXS tumor CPT0208910007 8a9d825a-3b91-4f1d-9110-558ea8c262b7_wxs_gdc_realn.bam 30000524369 BAM harmonized CPTAC3 4ebcf3c3-00f8-4bb7-bc91-58fd49c21f39 b79dd67efbac1ee4dea1792a19c28dea {"aliquot_tag": "ALQ_81d5d4f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.MethArray.Green.A C3N-03069 PDA Methylation_Array tissue_normal CPT0236360007 203561450041_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b431f876-2f7c-49f8-8572-eef175ab0d9e b76c5270b13e0266681f32d1788aceeb {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.MethArray.Red.A C3N-03069 PDA Methylation_Array tissue_normal CPT0236360007 203561450041_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 899273ef-d827-4f3c-a817-e0b9b82e6868 d20d7558ac344e0d63e0dd0fe66bf758 {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.miRNA-Seq.A.hg38 C3N-03069 PDA miRNA-Seq tissue_normal CPT0236360010 06fe4c40-1194-445e-9147-bebb2f9e757b_mirnaseq_gdc_realn.bam 222680705 BAM harmonized CPTAC3 8128404e-e360-413e-9f65-94b3075b9d96 d7c5136fc376938a74c0c8f849116f73 {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.miRNA-Seq.S24_L003_R1.A C3N-03069 PDA miRNA-Seq tissue_normal CPT0236360010 190813_UNC32-K00270_0196_AH5MCWBBXY_CTAGCT_S24_L003_R1_001.unaln.bam 194596857 BAM S24_L003_R1 submitted_unaligned CPTAC3 371da222-3ab0-4489-a141-e4279767ce8e 63ff7ea21100a5621e5cba7da25f6607 {"aliquot_tag": "ALQ_cba1f3dd", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.miRNA-Seq.S6_L004_R1.T C3N-03069 PDA miRNA-Seq tumor CPT0236340010 190712_UNC32-K00270_0192_BH7HL3BBXY_CACCGG_S6_L004_R1_001.unaln.bam 188644700 BAM S6_L004_R1 submitted_unaligned CPTAC3 b6572e73-5fd1-418f-867f-9a8035a3085e ef10d4163a11a746ab481ee78315d1dc {"aliquot_tag": "ALQ_b161a0bd", "sample": "S6", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.miRNA-Seq.T.hg38 C3N-03069 PDA miRNA-Seq tumor CPT0236340010 79cfcd8f-1f31-4e76-a801-3d13c9b4b4ed_mirnaseq_gdc_realn.bam 221535698 BAM harmonized CPTAC3 faa62ea7-b86c-4fea-8612-653486806a1e 1e0b66d6a2a5295174269b4d66e63a3e {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.RNA-Seq.chimeric.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.chimeric.gdc_realn.bam 26334876 BAM chimeric harmonized CPTAC3 d99bdd41-88da-418f-bc7f-b5457ee24e03 de032e7a6c18a4539156a2f82d377b39 {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.RNA-Seq.chimeric.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.chimeric.gdc_realn.bam 27898218 BAM chimeric harmonized CPTAC3 75125184-1958-4b37-9617-3d98b696718b aefb6fc80654422dea20141609ef72a3 {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.RNA-Seq.genomic.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.genomic.gdc_realn.bam 8410414316 BAM genomic harmonized CPTAC3 400a7f1b-ded3-42ca-ad20-1acca6f14fbd 3779f4f4155e3195e2c7612e1bdddb0a {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.RNA-Seq.genomic.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.genomic.gdc_realn.bam 7172746382 BAM genomic harmonized CPTAC3 c7303887-8b9c-4a52-a77a-aba76f68cf25 1140d705749eb340de292394c0f01dad {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.RNA-Seq.S24_L006_R1.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R1_001.fastq.gz 3605633432 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 e8194392-ef54-460f-8e23-380d7510dba5 5479de698484af899645faf31186a474 {"aliquot_tag": "ALQ_cba1f3dd", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.RNA-Seq.S24_L006_R2.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R2_001.fastq.gz 4142580685 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 43e21637-48dd-473a-8f19-70708526f37d e33f09c824ea3a74ff254b83f1aa5f71 {"aliquot_tag": "ALQ_cba1f3dd", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.RNA-Seq.S25_L006_R1.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R1_001.fastq.gz 3608441806 FASTQ S25_L006_R1 submitted_unaligned CPTAC3 96d96f8a-5cee-44ff-a47f-c9ea645e95c9 bcb398a0e8b7d87b0e29e6f9c0a119f8 {"aliquot_tag": "ALQ_b161a0bd", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.RNA-Seq.S25_L006_R2.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R2_001.fastq.gz 3702202882 FASTQ S25_L006_R2 submitted_unaligned CPTAC3 6d8a21ab-6059-4d0c-ad2e-db57b6574401 e61bb734c47112cf9e956e17a08b645f {"aliquot_tag": "ALQ_b161a0bd", "sample": "S25", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.RNA-Seq.transcriptome.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.transcriptome.gdc_realn.bam 10611324381 BAM transcriptome harmonized CPTAC3 15a949d8-e07a-429c-9f1c-79a90779a68c 435181f15558ea6bffe188ee24040f36 {"aliquot_tag": "ALQ_cba1f3dd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.RNA-Seq.transcriptome.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.transcriptome.gdc_realn.bam 10932211854 BAM transcriptome harmonized CPTAC3 8e614409-fb33-46ed-a56c-0be5f0e63481 b44959cdf0c32bf6e77936e0a2c1daae {"aliquot_tag": "ALQ_b161a0bd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.WGS.N C3N-03069 PDA WGS blood_normal CPT0236400002 CPT0236400002.WholeGenome.RP-1303.bam 75260652979 BAM submitted_aligned CPTAC3 d4ecce44-d5a2-4c1d-960f-267b860c8765 3a0b448c960498f1a79655b26a777e92 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03069.WGS.N.hg38 C3N-03069 PDA WGS blood_normal CPT0236400002 dc0bc2d5-bdb2-4d41-b372-f885d2c1afac_wgs_gdc_realn.bam 111347008623 BAM harmonized CPTAC3 8af2981f-0b85-44f3-b4e2-4509b8224fb0 5e353f7a6102cbd3d61563e64e9864c2 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03069.WGS.T C3N-03069 PDA WGS tumor CPT0236340006 CPT0236340006.WholeGenome.RP-1303.bam 201439181641 BAM submitted_aligned CPTAC3 1f44e41c-59ab-42ec-8418-773039f14cd1 48d0717946c78633754d96f711139541 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.WGS.T.hg38 C3N-03069 PDA WGS tumor CPT0236340006 74765f27-8118-4176-bce5-2727675c951a_wgs_gdc_realn.bam 294067802472 BAM harmonized CPTAC3 9ad7c0f8-8200-483d-9107-a20785b8f925 a9fe9166baf9ab4273b051377f690110 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.WXS.A C3N-03069 PDA WXS tissue_normal CPT0236360007 CPT0236360007.WholeExome.RP-1303.bam 30032429165 BAM submitted_aligned CPTAC3 f88169b9-1159-435e-a18f-73f53a00036e 4dc492bff0fbbfccda8cba72de5235d5 {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.WXS.A.hg38 C3N-03069 PDA WXS tissue_normal CPT0236360007 385dcc88-6285-479f-8ecf-79750d32f7df_wxs_gdc_realn.bam 41430739196 BAM harmonized CPTAC3 0c48a187-4ec1-402b-bc17-43a0b3d9ccaf 0e4a876887e03f09195545dda75675ff {"aliquot_tag": "ALQ_4cde573f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03069.WXS.N C3N-03069 PDA WXS blood_normal CPT0236400002 CPT0236400002.WholeExome.RP-1303.bam 24567618773 BAM submitted_aligned CPTAC3 ad291a7e-4ce4-4110-a8ee-806007bf1bd1 8cab1d4594c73aa8156738801cb263c6 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03069.WXS.N.hg38 C3N-03069 PDA WXS blood_normal CPT0236400002 dc0bc2d5-bdb2-4d41-b372-f885d2c1afac_wxs_gdc_realn.bam 34218863786 BAM harmonized CPTAC3 78f6aa18-c016-4e21-9dbd-bdfdfe0db193 9bff833a3ccf44abf0c10fb3551d49c4 {"aliquot_tag": "ALQ_aef166a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03069.WXS.T C3N-03069 PDA WXS tumor CPT0236340006 CPT0236340006.WholeExome.RP-1303.bam 22358595070 BAM submitted_aligned CPTAC3 19e1fb27-7c9d-45b0-a334-6d16948f4a54 88599e234e0200283d66742c9e96c145 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03069.WXS.T.hg38 C3N-03069 PDA WXS tumor CPT0236340006 74765f27-8118-4176-bce5-2727675c951a_wxs_gdc_realn.bam 30375485125 BAM harmonized CPTAC3 e5d328a6-03a8-4685-af8a-c4a2e51ce843 8dac2d0a18a1fde3936b416159c9e331 {"aliquot_tag": "ALQ_411934c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.MethArray.Green.T C3N-03070 GBM Methylation_Array tumor CPT0208980006 203219650157_R03C01_Grn.idat 13676224 IDAT Green NA CPTAC3 3cf4fce8-2757-47ba-b17b-bc34d8f25f6a da3fa7a1916b3b067931bc372a526fce {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.MethArray.Red.T C3N-03070 GBM Methylation_Array tumor CPT0208980006 203219650157_R03C01_Red.idat 13676224 IDAT Red NA CPTAC3 13f994e1-3fcb-4a74-bc48-89f038d9741f bc3e305d64bcab3921c74b3ab904b26a {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.miRNA-Seq.S34_L008_R1.T C3N-03070 GBM miRNA-Seq tumor CPT0208980009 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L008_R1_001.unaln.bam 223702156 BAM S34_L008_R1 submitted_unaligned CPTAC3 844fcaef-1192-4374-b269-79a0978dbf50 9f55f021acdcfad01f83df993cd5c27f {"aliquot_tag": "ALQ_6b7d9b81", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.miRNA-Seq.T.hg38 C3N-03070 GBM miRNA-Seq tumor CPT0208980009 91cd5d29-e69b-4c71-9acd-3dd8cf7408c0_mirnaseq_gdc_realn.bam 258444867 BAM harmonized CPTAC3 7ff0dad7-4467-4755-8a51-e2ed5381225f 72dc97fb299d85011c235ba7af7f84ee {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.RNA-Seq.chimeric.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.chimeric.gdc_realn.bam 64797960 BAM chimeric harmonized CPTAC3 5aedc181-b02b-41bc-8058-b83205c22fb9 b4eb21945072436f3a2b59ddd164a319 {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.RNA-Seq.genomic.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.genomic.gdc_realn.bam 9364809591 BAM genomic harmonized CPTAC3 ea7d19fc-959e-46ac-bbeb-dfd20afb1198 492d022f360b7dc7c46a80f30d296bde {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.RNA-Seq.S10_L004_R1.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R1_001.fastq.gz 4511670372 FASTQ S10_L004_R1 submitted_unaligned CPTAC3 66d938ca-8d17-45b9-834d-a289ed685049 e75d54b9f328dcb4bc9cbf02d2a33ccd {"aliquot_tag": "ALQ_6b7d9b81", "sample": "S10", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.RNA-Seq.S10_L004_R2.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R2_001.fastq.gz 4305537656 FASTQ S10_L004_R2 submitted_unaligned CPTAC3 6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff b08b10490f6ae39798bd90b364984d19 {"aliquot_tag": "ALQ_6b7d9b81", "sample": "S10", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.RNA-Seq.transcriptome.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.transcriptome.gdc_realn.bam 10809388036 BAM transcriptome harmonized CPTAC3 a8e1ba08-e261-4c50-b2af-fe057d352178 4212f020b0c5bfaf0767356072639f79 {"aliquot_tag": "ALQ_6b7d9b81", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.WGS.N C3N-03070 GBM WGS blood_normal CPT0209010002 CPT0209010002.WholeGenome.RP-1303.bam 60352253574 BAM submitted_aligned CPTAC3 ec5a3f84-7596-43cf-9be4-b0b4908694c7 e72b51c6260da53fd27bbf963d25436c {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03070.WGS.N.hg38 C3N-03070 GBM WGS blood_normal CPT0209010002 13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wgs_gdc_realn.bam 87863624867 BAM harmonized CPTAC3 3b25f0f8-dc89-4946-ac13-cdde820a8595 91c2cf86e41a19383b0223561ec9558c {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03070.WGS.T C3N-03070 GBM WGS tumor CPT0208980006 CPT0208980006.WholeGenome.RP-1303.bam 58819746560 BAM submitted_aligned CPTAC3 59777ce9-ca51-4abc-88d1-e0dde527fdfe d5df8857a5d23c114984fdcc91a3cdaf {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.WGS.T.hg38 C3N-03070 GBM WGS tumor CPT0208980006 3d3a5916-ded3-4257-84d2-b71a75547112_wgs_gdc_realn.bam 86267479695 BAM harmonized CPTAC3 067b2d03-0e13-4df8-be26-507de3e5b09d 7746284f8a8ac0c579f6bceb5ed435c9 {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.WXS.N C3N-03070 GBM WXS blood_normal CPT0209010002 CPT0209010002.WholeExome.RP-1303.bam 25048648491 BAM submitted_aligned CPTAC3 dfbe43e5-ff4a-48b3-8b4e-109bb98da402 a262a355d3bb7b808f4065976d79b6ba {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03070.WXS.N.hg38 C3N-03070 GBM WXS blood_normal CPT0209010002 13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wxs_gdc_realn.bam 34635416670 BAM harmonized CPTAC3 b1e95f84-e3a5-42e6-8f3c-3c36aa6d8717 bec82cd024ec8eba4df6a9520e9c948f {"aliquot_tag": "ALQ_70c77a04", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03070.WXS.T C3N-03070 GBM WXS tumor CPT0208980006 CPT0208980006.WholeExome.RP-1303.bam 27827864765 BAM submitted_aligned CPTAC3 8c1c3b19-dc60-42a3-9160-576c41d78609 a5dd0231b1ba3ecd1b6db7af884958c4 {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03070.WXS.T.hg38 C3N-03070 GBM WXS tumor CPT0208980006 3d3a5916-ded3-4257-84d2-b71a75547112_wxs_gdc_realn.bam 38712464689 BAM harmonized CPTAC3 cbb19af6-b203-45bb-98a4-7355dab042b9 0b59b31c0f2c86186daefe07efb7ee88 {"aliquot_tag": "ALQ_fbc28610", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.MethArray.Green.T C3N-03072 LSCC Methylation_Array tumor CPT0209020007 203219650156_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 884fe1f5-eada-4eb0-bc8a-169e07b331cc b1428c6575976c783e40a95f180019d9 {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.MethArray.Red.T C3N-03072 LSCC Methylation_Array tumor CPT0209020007 203219650156_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 1feb99a0-453c-4684-b0c0-96e63498b721 9e410c169d79c64eadfa686a5bd044bd {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.miRNA-Seq.S25_L002_R1.T C3N-03072 LSCC miRNA-Seq tumor CPT0209020010 190206_UNC31-K00269_0191_AH2WY5BBXY_ATCACG_S25_L002_R1_001.unaln.bam 143815935 BAM S25_L002_R1 submitted_unaligned CPTAC3 8b0acf86-f94c-4910-b6e9-2534708ea9c5 da1429a3f68959d065c9cfed85988b76 {"aliquot_tag": "ALQ_c07250b9", "sample": "S25", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.miRNA-Seq.T.hg38 C3N-03072 LSCC miRNA-Seq tumor CPT0209020010 b9d63ad5-3c70-412f-a3fa-d1b3296e76e9_mirnaseq_gdc_realn.bam 165437252 BAM harmonized CPTAC3 6187717e-e2cd-45b3-9957-252ecb61cd39 edf5be064252b9e7f6dccbd18f9fcbdc {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.RNA-Seq.chimeric.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.chimeric.gdc_realn.bam 89114912 BAM chimeric harmonized CPTAC3 84f45dda-e6cb-41e1-b7e6-432d43142806 41b3ba99e4cd48e1e7b25bc0559260cd {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.RNA-Seq.genomic.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.genomic.gdc_realn.bam 6422475185 BAM genomic harmonized CPTAC3 15e14059-7090-4f66-b9e2-d8ca154aa3ec a4aae70fb914814b01c4f36c15d6c43d {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.RNA-Seq.S9_L003_R1.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R1_001.fastq.gz 3100065422 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 64aababb-a390-4737-9537-19167b6cba6a 4f676388ac4440f043d5c8a6dbd60c73 {"aliquot_tag": "ALQ_c07250b9", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.RNA-Seq.S9_L003_R2.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R2_001.fastq.gz 3084681041 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 3afce0c4-ac82-4f80-b237-1a5fd859f8d6 73f1b7e9731f6a676742ee5c24c29389 {"aliquot_tag": "ALQ_c07250b9", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.RNA-Seq.transcriptome.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.transcriptome.gdc_realn.bam 7554135157 BAM transcriptome harmonized CPTAC3 9e31f1fe-e3fb-4668-a501-90af96c42df2 776055c9ed03d828e060399f765b5274 {"aliquot_tag": "ALQ_c07250b9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.WGS.N C3N-03072 LSCC WGS blood_normal CPT0209080002 CPT0209080002.WholeGenome.RP-1303.bam 104519418611 BAM submitted_aligned CPTAC3 150ba2e5-484c-4fd3-8667-d9c6bd66fd81 c1de09dd5637afa0df1203b6f9cad72e {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03072.WGS.N.hg38 C3N-03072 LSCC WGS blood_normal CPT0209080002 d1fe7625-edef-4de3-8580-c5a1e327b334_wgs_gdc_realn.bam 151186957717 BAM harmonized CPTAC3 82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f e04c43be840b2df4f2952321c92cdbf4 {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03072.WGS.T C3N-03072 LSCC WGS tumor CPT0209020007 CPT0209020007.WholeGenome.RP-1303.bam 106187948821 BAM submitted_aligned CPTAC3 38740a22-1efb-4b57-96c4-4b0fe66a141b afb6d9041631c2649d3b99e225ed067a {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.WGS.T.hg38 C3N-03072 LSCC WGS tumor CPT0209020007 a695af96-c8ba-42aa-8290-8f485ccdbdb2_wgs_gdc_realn.bam 155573604535 BAM harmonized CPTAC3 434ab82e-fa78-47ab-9bc0-60020e63fc04 2abc79f8ba1b51f57587022b1d74f1bc {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.WXS.N C3N-03072 LSCC WXS blood_normal CPT0209080002 CPT0209080002.WholeExome.RP-1303.bam 24161645438 BAM submitted_aligned CPTAC3 44e61428-ae03-46f3-bac0-f4ab8dbf8c97 9809884fdde518b78740d7432681dc55 {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03072.WXS.N.hg38 C3N-03072 LSCC WXS blood_normal CPT0209080002 d1fe7625-edef-4de3-8580-c5a1e327b334_wxs_gdc_realn.bam 33951127306 BAM harmonized CPTAC3 35c64665-2925-450f-afc4-cc81d12fab1a 7f3695c7998228aa64fdc545d4aae216 {"aliquot_tag": "ALQ_7dd71875", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03072.WXS.T C3N-03072 LSCC WXS tumor CPT0209020007 CPT0209020007.WholeExome.RP-1303.bam 31510409952 BAM submitted_aligned CPTAC3 c5fe9c9f-9ed0-41ce-a724-8a028924214f fe65cecb1e45d631f8a42d35cd66d1a6 {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03072.WXS.T.hg38 C3N-03072 LSCC WXS tumor CPT0209020007 a695af96-c8ba-42aa-8290-8f485ccdbdb2_wxs_gdc_realn.bam 44490978097 BAM harmonized CPTAC3 ca845ba9-487e-4de6-a202-74ed414d654a d53964a6bfcfb3bd5efbd106eaf1aab3 {"aliquot_tag": "ALQ_470df45b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.MethArray.Green.A C3N-03073 LUAD Methylation_Array tissue_normal CPT0209110006 203561450046_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 fdceb8d2-8743-4a3d-ae2a-865271707435 04c6c049558cb3b8d727c3ad46ce15da {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.MethArray.Green.T C3N-03073 LUAD Methylation_Array tumor CPT0209100006 203561450114_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b43577c3-739c-41a7-8a1a-8db170a2c594 3362f9609ace12df4c31b3e529520ebe {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.MethArray.Red.A C3N-03073 LUAD Methylation_Array tissue_normal CPT0209110006 203561450046_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 45625f02-0c51-424b-aadf-7a35681153a0 436ee6213aa280c2d50c423244963d24 {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.MethArray.Red.T C3N-03073 LUAD Methylation_Array tumor CPT0209100006 203561450114_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 4fce9541-5697-4617-804d-7ab4b65e093a f9ed602ff3191ae44497f918b12d0ec6 {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.miRNA-Seq.A.hg38 C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 ffbdabd5-324e-4056-a7f3-6431d450f9b9_mirnaseq_gdc_realn.bam 228036783 BAM harmonized CPTAC3 9ae2eda7-27ae-424f-bf0d-5eab2a473b1c 8ce946d9729702a60b0f94e54fe85112 {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.miRNA-Seq.S46_L006_R1.A C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACCGG_S46_L006_R1_001.unaln.bam 202343629 BAM S46_L006_R1 submitted_unaligned CPTAC3 01557f5c-1498-49a7-8ca0-5dcad0b64f33 13574c90c1617978e20b24d09a845807 {"aliquot_tag": "ALQ_2c497029", "sample": "S46", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.miRNA-Seq.S5_L007_R1.T C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L007_R1_001.unaln.bam 170217266 BAM S5_L007_R1 submitted_unaligned CPTAC3 18b12ad5-0a48-44b0-968f-591fb185fdd2 8b1a42d611e97eda7ebc1f6a62ac43ed {"aliquot_tag": "ALQ_11295999", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.miRNA-Seq.T.hg38 C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 e34f41ee-9783-4baf-8d2d-fc7805d96c18_mirnaseq_gdc_realn.bam 188336343 BAM harmonized CPTAC3 738af13e-57ad-4e5c-b246-ab70bdabd56d 5660f0d2176d918c04d894de78f028c0 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.RNA-Seq.chimeric.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.chimeric.gdc_realn.bam 27899026 BAM chimeric harmonized CPTAC3 dc607152-916f-47a1-8b24-3ab84f5d68a9 541814f518a906c21b561d6e034022f2 {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.RNA-Seq.chimeric.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.chimeric.gdc_realn.bam 33236511 BAM chimeric harmonized CPTAC3 64d95282-ad18-45f6-843d-c94b0a3951d4 94ea88efc08f3f7f5ef483fc894c30a1 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.RNA-Seq.genomic.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.genomic.gdc_realn.bam 9933597174 BAM genomic harmonized CPTAC3 007b4be0-dbf1-4bc9-99d3-eafb1a55024b d6b2ef939f30e77ec5bf8c6cd1afe581 {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.RNA-Seq.genomic.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.genomic.gdc_realn.bam 11466962894 BAM genomic harmonized CPTAC3 286b437a-a5f7-4a00-a748-12827962e427 ed7736f1c0dbb0d6f5614427f4433233 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.RNA-Seq.S20_L005_R1.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R1_001.fastq.gz 3911246975 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 b203accd-ac6f-4096-8b45-578c7365a462 d170a586b02bbee5b6f5024e1fa0f099 {"aliquot_tag": "ALQ_2c497029", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.RNA-Seq.S20_L005_R2.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R2_001.fastq.gz 4309621063 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 9af1321e-4672-466f-b1b3-8365ead84c06 67ca931174ca001eb9035638ef01e72f {"aliquot_tag": "ALQ_2c497029", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.RNA-Seq.S7_L002_R1.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R1_001.fastq.gz 4110997799 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 9d4ad6ac-66af-4216-8aa2-40531e6b3c32 014ad50c2ad11b2e7c2efc343a053957 {"aliquot_tag": "ALQ_11295999", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.RNA-Seq.S7_L002_R2.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R2_001.fastq.gz 4794736220 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 7a4ecbb4-b7db-4bef-8933-bcee1d84a4d0 c710d856664107b9375d7de6cfc793f5 {"aliquot_tag": "ALQ_11295999", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.RNA-Seq.transcriptome.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.transcriptome.gdc_realn.bam 8816259472 BAM transcriptome harmonized CPTAC3 b1a22f4d-1b5d-4aef-894f-cf83f04beba9 a59833a0f149bb70b318f7b92be644db {"aliquot_tag": "ALQ_2c497029", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.RNA-Seq.transcriptome.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.transcriptome.gdc_realn.bam 9114675396 BAM transcriptome harmonized CPTAC3 e807f199-ce40-4f5f-891b-3672b2b3b7f0 d32bbae5cd76a9cbd2fa5ebb183f2697 {"aliquot_tag": "ALQ_11295999", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.WGS.N C3N-03073 LUAD WGS blood_normal CPT0209150002 CPT0209150002.WholeGenome.RP-1303.bam 75684433012 BAM submitted_aligned CPTAC3 fcc128a4-b9ac-4ac5-80b9-9189c034e456 0d90f2da059479499497f4d4a52eab77 {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03073.WGS.N.hg38 C3N-03073 LUAD WGS blood_normal CPT0209150002 d640799e-ed19-4c36-bb6c-7642f28e080a_wgs_gdc_realn.bam 109719914284 BAM harmonized CPTAC3 da91d771-6aa6-477a-8ebf-0e8922f3955b 3befd9b660d625308b62ae041be39d05 {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03073.WGS.T C3N-03073 LUAD WGS tumor CPT0209100006 CPT0209100006.WholeGenome.RP-1303.bam 80741529480 BAM submitted_aligned CPTAC3 92c2a453-112d-4d60-a320-f7b81fad9d15 5188320261e8f7c3b46836fea2c28c77 {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.WGS.T.hg38 C3N-03073 LUAD WGS tumor CPT0209100006 0de194e7-cd6e-42b7-b1bc-26838dfa9f15_wgs_gdc_realn.bam 117599026378 BAM harmonized CPTAC3 d639f87e-d562-4253-8c9b-794700a6cdac 3942911a6bed1e564fb9ae6c70b5fd2b {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.WXS.A C3N-03073 LUAD WXS tissue_normal CPT0209110006 CPT0209110006.WholeExome.RP-1303.bam 25065215466 BAM submitted_aligned CPTAC3 32af4cc5-e85b-4161-8949-f90b56fbf54c dcd9623658aadb5b81ef82a208e35be8 {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.WXS.A.hg38 C3N-03073 LUAD WXS tissue_normal CPT0209110006 78689c3d-5805-4bba-92e6-b6adb0b3ef33_wxs_gdc_realn.bam 34864563871 BAM harmonized CPTAC3 08719668-6ac9-448f-9d0a-ed2c52706f44 bc3fb5f9ad359d269c0dd5fe3a79ab7a {"aliquot_tag": "ALQ_bcf66db8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03073.WXS.N C3N-03073 LUAD WXS blood_normal CPT0209150002 CPT0209150002.WholeExome.RP-1303.bam 42272286622 BAM submitted_aligned CPTAC3 e916cb57-68d8-4cef-afe7-4975dc0d9728 108c3fd6a4a6398aa81859acd5fda47a {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03073.WXS.N.hg38 C3N-03073 LUAD WXS blood_normal CPT0209150002 d640799e-ed19-4c36-bb6c-7642f28e080a_wxs_gdc_realn.bam 58249255363 BAM harmonized CPTAC3 322f55df-1f82-414a-97ea-ce488d1523e6 866492591cee0c9011e3f67462a544ea {"aliquot_tag": "ALQ_4e1b0f61", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03073.WXS.T C3N-03073 LUAD WXS tumor CPT0209100006 CPT0209100006.WholeExome.RP-1303.bam 28659836430 BAM submitted_aligned CPTAC3 4e59241f-cf31-4ccf-86fb-385090e23d4f 0d2d5b795efbc24e0079559fa378a7e4 {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03073.WXS.T.hg38 C3N-03073 LUAD WXS tumor CPT0209100006 0de194e7-cd6e-42b7-b1bc-26838dfa9f15_wxs_gdc_realn.bam 39205976435 BAM harmonized CPTAC3 6e7ae3a9-5ab3-46a9-a97f-1eba712c2495 fe36a044d891c597c3c9ff6cf07fd62c {"aliquot_tag": "ALQ_81964408", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.MethArray.Green.A C3N-03074 LUAD Methylation_Array tissue_normal CPT0209180006 203561450014_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b35d9e57-b5c0-4699-adc3-c38286a01611 8b9f32e013d7846d79bc759b5c92cc5f {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.MethArray.Green.T C3N-03074 LUAD Methylation_Array tumor CPT0209170006 203561620016_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c8c5b0db-fed6-40c1-a38e-6fc2f0bcb9b8 dcaa0e6d9bc3f1b122848932b68e3785 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.MethArray.Red.A C3N-03074 LUAD Methylation_Array tissue_normal CPT0209180006 203561450014_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 2b4e9936-93ae-4153-8b74-77e284b386e8 afea1b7e443780bda269b08b8bdcfc34 {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.MethArray.Red.T C3N-03074 LUAD Methylation_Array tumor CPT0209170006 203561620016_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 9fb2756a-cfb4-44fd-9d21-fecd55a440cb 2975bf49d40fc613670291de065f79fa {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.miRNA-Seq.A.hg38 C3N-03074 LUAD miRNA-Seq tissue_normal CPT0209180009 b9eda05c-0b15-4a7c-8102-0e68a6678c55_mirnaseq_gdc_realn.bam 235210508 BAM harmonized CPTAC3 31e5bf53-49fd-4418-a8a4-7fcc3c1c1925 f80b7e8e27c450d0e67319288600fb4f {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.miRNA-Seq.S25_L006_R1.A C3N-03074 LUAD miRNA-Seq tissue_normal CPT0209180009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACGAT_S25_L006_R1_001.unaln.bam 206199886 BAM S25_L006_R1 submitted_unaligned CPTAC3 d2bd6684-6d13-4b77-8114-f9e0017d555b aacae5939b862421da180e3abc44d2a1 {"aliquot_tag": "ALQ_21591258", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.miRNA-Seq.S6_L007_R1.T C3N-03074 LUAD miRNA-Seq tumor CPT0209170009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAGCTT_S6_L007_R1_001.unaln.bam 192041758 BAM S6_L007_R1 submitted_unaligned CPTAC3 8f1dacf8-e6cf-46f9-bb9e-69e2f2207807 8c91e2041a55041383079daded65023f {"aliquot_tag": "ALQ_a3098589", "sample": "S6", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.miRNA-Seq.T.hg38 C3N-03074 LUAD miRNA-Seq tumor CPT0209170009 d0422da4-aa0a-46e6-81eb-9242f5e6c894_mirnaseq_gdc_realn.bam 214810185 BAM harmonized CPTAC3 d9e0c3da-f70a-49f5-87f4-092ac3640a0d 795490028c102d5f40aa104216825d6d {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.RNA-Seq.chimeric.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.chimeric.gdc_realn.bam 30784633 BAM chimeric harmonized CPTAC3 9c785892-c352-468a-b79d-84e7179d095b 12275cd2d5f4d36237f7c6c0253bf903 {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.RNA-Seq.chimeric.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.chimeric.gdc_realn.bam 31114227 BAM chimeric harmonized CPTAC3 7db9cabe-2fcb-4054-829a-dacd64a307dd 2190189e6df4866c360844ae8541ad48 {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.RNA-Seq.genomic.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.genomic.gdc_realn.bam 9185051440 BAM genomic harmonized CPTAC3 28a88dca-16c5-4dae-bab2-5d298b541686 5a3441d09d0986ad1ff7c4c18887f2fa {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.RNA-Seq.genomic.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.genomic.gdc_realn.bam 12966177421 BAM genomic harmonized CPTAC3 af1da9d1-dc9d-41e5-bcdd-73bbd01f0eaf 936d8806ebf29fd966d353ddb2454bb8 {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.RNA-Seq.S1_L001_R1.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3794109313 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 8f4c0806-05ff-4a2e-bddf-0536970bb83a 8cb13d466d5dff87677b06d3595a3dae {"aliquot_tag": "ALQ_21591258", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.RNA-Seq.S1_L001_R2.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4389053383 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 357f1496-fdf7-4cb8-af26-a3f6764def24 4bed21a3d3ee83280920c650cf9c18bb {"aliquot_tag": "ALQ_21591258", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.RNA-Seq.S8_L002_R1.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R1_001.fastq.gz 4490953808 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 3ae242c5-e591-4e09-b4df-b36c90d9045b 19a4e43eeb2bde20d839dd4ba379d52f {"aliquot_tag": "ALQ_a3098589", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.RNA-Seq.S8_L002_R2.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R2_001.fastq.gz 5068296542 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 92a8f144-e2fe-44a0-9ebd-b739f67bacc2 acb6d551810e1727c1e892510825efbc {"aliquot_tag": "ALQ_a3098589", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.RNA-Seq.transcriptome.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.transcriptome.gdc_realn.bam 8763522837 BAM transcriptome harmonized CPTAC3 24d3be2e-fa09-46ea-9bad-2437bb9e5624 4130826fa752f3166764b82fb42dc3ae {"aliquot_tag": "ALQ_21591258", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.RNA-Seq.transcriptome.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.transcriptome.gdc_realn.bam 12068779649 BAM transcriptome harmonized CPTAC3 2ee5637e-e34f-4b34-8471-ff5c58172bf8 222ee265c37f911ad6765e38736f228e {"aliquot_tag": "ALQ_a3098589", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.WGS.N C3N-03074 LUAD WGS blood_normal CPT0209220002 CPT0209220002.WholeGenome.RP-1303.bam 56749986644 BAM submitted_aligned CPTAC3 83baf41c-333f-4983-9e18-91c0597987a2 87832c1e34c4c2850f8d2fcd2356d288 {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03074.WGS.N.hg38 C3N-03074 LUAD WGS blood_normal CPT0209220002 8f87622c-43e3-4176-849f-8334b1a8eefa_wgs_gdc_realn.bam 81937168422 BAM harmonized CPTAC3 9cc38e27-d6da-4b5b-ba25-c39f54c4fc3e 596e85c52395897d35710c823cf157e1 {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03074.WGS.T C3N-03074 LUAD WGS tumor CPT0209170006 CPT0209170006.WholeGenome.RP-1303.bam 77270373127 BAM submitted_aligned CPTAC3 2f460243-5887-4451-b7c7-c75d9e38a484 2030e1d591de29a56842af643c43ced5 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.WGS.T.hg38 C3N-03074 LUAD WGS tumor CPT0209170006 9323ca12-aefe-4fa5-ab15-e9b3a8e68fa3_wgs_gdc_realn.bam 112346162964 BAM harmonized CPTAC3 e394b658-0cbe-4fac-a874-79f48a6029bf 2790a96cd1abf891d07ac3daa05cbc56 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.WXS.A C3N-03074 LUAD WXS tissue_normal CPT0209180006 CPT0209180006.WholeExome.RP-1303.bam 21119733647 BAM submitted_aligned CPTAC3 7d80c776-adcb-46fd-ba05-220561018c52 3e8ac9fcce27634dc908be02b496016d {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.WXS.A.hg38 C3N-03074 LUAD WXS tissue_normal CPT0209180006 aea871d6-0a8c-4ff9-b297-7939b1889468_wxs_gdc_realn.bam 28860718671 BAM harmonized CPTAC3 42492b65-2c2c-46b9-867b-6d667ed52774 2db0fa44bb7ef6e85b5de1797a7c5725 {"aliquot_tag": "ALQ_b1e60fc9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03074.WXS.N C3N-03074 LUAD WXS blood_normal CPT0209220002 CPT0209220002.WholeExome.RP-1303.bam 28347154390 BAM submitted_aligned CPTAC3 a3184efc-2a29-496a-819e-f164913dc7ed 68533bae295fdaf4669a1f47f71d6e0d {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03074.WXS.N.hg38 C3N-03074 LUAD WXS blood_normal CPT0209220002 8f87622c-43e3-4176-849f-8334b1a8eefa_wxs_gdc_realn.bam 39083322636 BAM harmonized CPTAC3 e824b25d-5e59-4890-bc67-0b8b6a74ea2a ecedfd2f58e045c1e4b466965530fce6 {"aliquot_tag": "ALQ_7aafa1df", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03074.WXS.T C3N-03074 LUAD WXS tumor CPT0209170006 CPT0209170006.WholeExome.RP-1303.bam 28242160212 BAM submitted_aligned CPTAC3 1b053b22-2f39-40c7-b690-6a380fbf13a9 552f4fd597cda0480f58fbf1f7f9f321 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03074.WXS.T.hg38 C3N-03074 LUAD WXS tumor CPT0209170006 9323ca12-aefe-4fa5-ab15-e9b3a8e68fa3_wxs_gdc_realn.bam 39175292582 BAM harmonized CPTAC3 7778c84e-34d6-4984-8bc7-0b3566f61bab 6e72a314f6606a0589732cd51cf89202 {"aliquot_tag": "ALQ_33b69818", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.MethArray.Green.A C3N-03076 LSCC Methylation_Array tissue_normal CPT0236430009 203219670054_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 08f6bc53-4942-4aea-ab9e-416ea9c1e8a5 7f61f0ecb5d16c6ebb7c220f3aa81ff8 {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.MethArray.Green.T C3N-03076 LSCC Methylation_Array tumor CPT0236420006 203219640157_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b0fdd4d5-57cc-4d47-80f7-f24449b41c50 5f9b79340c2d8b3a46dfb74ac82c5f90 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.MethArray.Red.A C3N-03076 LSCC Methylation_Array tissue_normal CPT0236430009 203219670054_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 840bc381-4193-4a90-b3cb-fbb5314b1c1b 808316543a406647c3b8675830692973 {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.MethArray.Red.T C3N-03076 LSCC Methylation_Array tumor CPT0236420006 203219640157_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 0119b71b-f145-4f16-8aab-2c665ed71bd0 2b01a4a9f53183f7b809d96b8f51484b {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.miRNA-Seq.A.hg38 C3N-03076 LSCC miRNA-Seq tissue_normal CPT0236430006 c4a0b93c-ee2f-4e2e-8c07-73e0095934b3_mirnaseq_gdc_realn.bam 164982455 BAM harmonized CPTAC3 dc99bba6-cc18-4152-83fe-aa0243198b95 07aa3eb6650ac549edf2d32d8d7a9dce {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.miRNA-Seq.S23_L005_R1.A C3N-03076 LSCC miRNA-Seq tissue_normal CPT0236430006 190206_UNC31-K00269_0191_AH2WY5BBXY_CAAAAG_S23_L005_R1_001.unaln.bam 144320025 BAM S23_L005_R1 submitted_unaligned CPTAC3 c46b0474-2f84-40c8-b37f-789dfde924ae e11c6e2b7c093c70ca3dab531f7bec10 {"aliquot_tag": "ALQ_ee3cd861", "sample": "S23", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.miRNA-Seq.S35_L004_R1.T C3N-03076 LSCC miRNA-Seq tumor CPT0236420009 190206_UNC31-K00269_0191_AH2WY5BBXY_AGTTCC_S35_L004_R1_001.unaln.bam 186481355 BAM S35_L004_R1 submitted_unaligned CPTAC3 3355dc8a-bd78-4913-85af-9a4b5641123a 3e02580d0ba7bc11f91dffe7d9aee12c {"aliquot_tag": "ALQ_43e3ec40", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.miRNA-Seq.T.hg38 C3N-03076 LSCC miRNA-Seq tumor CPT0236420009 45475ad6-f20c-4898-ad2e-8009094f8007_mirnaseq_gdc_realn.bam 207419802 BAM harmonized CPTAC3 3565414e-e943-46d2-95a8-c1b070b280d6 f43fb610a131b508b85265e7a3126fba {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.RNA-Seq.chimeric.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.chimeric.gdc_realn.bam 233176306 BAM chimeric harmonized CPTAC3 a6ecae89-75c2-4883-ab53-8fcf945b18f1 638917fb422b6df1ba237bda1142cb25 {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.RNA-Seq.chimeric.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.chimeric.gdc_realn.bam 150663677 BAM chimeric harmonized CPTAC3 0fd3be3d-4097-41fd-b300-d34622f785fc 8dc85a7794da0ce38faf85818a186809 {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.RNA-Seq.genomic.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.genomic.gdc_realn.bam 8731433766 BAM genomic harmonized CPTAC3 909e344b-5a0c-4192-822c-c39e838b65ea 4560d16ca0f4c3fc39a93a26c495f492 {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.RNA-Seq.genomic.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.genomic.gdc_realn.bam 9035335308 BAM genomic harmonized CPTAC3 55b77a73-72f7-455b-904f-083638014cf6 414cda7e6acb139017d12c0c62da4089 {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.RNA-Seq.S20_L005_R1.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R1_001.fastq.gz 4227933734 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 5ee88db7-c799-43d9-9578-ff5566d16417 4f6b6bd22bccc97bbe8631771df3a08b {"aliquot_tag": "ALQ_ee3cd861", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.RNA-Seq.S20_L005_R2.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R2_001.fastq.gz 4525794989 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 3d0d598c-b5ed-439f-996e-952992e8d2af ebde4e7fb57855e8d8aa36227cad780b {"aliquot_tag": "ALQ_ee3cd861", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.RNA-Seq.S8_L002_R1.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R1_001.fastq.gz 4328238119 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 7395d897-f8bf-4128-a34d-ef3377758429 7c62fc4fd360bd196be0c2bb12845ba8 {"aliquot_tag": "ALQ_43e3ec40", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.RNA-Seq.S8_L002_R2.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R2_001.fastq.gz 4736270009 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 309c50cf-2f39-4052-b219-bae8da306732 bc6d09d2791b8f830f4a7768433909bb {"aliquot_tag": "ALQ_43e3ec40", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.RNA-Seq.transcriptome.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.transcriptome.gdc_realn.bam 10252350165 BAM transcriptome harmonized CPTAC3 622ffe04-3eed-469b-9ffd-59d923c64ebd dc1c3cbb82a89d3f7d60af100d7a134b {"aliquot_tag": "ALQ_ee3cd861", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.RNA-Seq.transcriptome.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.transcriptome.gdc_realn.bam 11059712276 BAM transcriptome harmonized CPTAC3 3c6c1ba5-4759-4c8a-9720-6b2bb3848ed0 6ead5aac64a4618396247f04370f94a0 {"aliquot_tag": "ALQ_43e3ec40", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.WGS.N C3N-03076 LSCC WGS blood_normal CPT0236470002 CPT0236470002.WholeGenome.RP-1303.bam 99289397934 BAM submitted_aligned CPTAC3 cdeefe38-0102-49ec-853e-f8332817d2e2 e772814d63980ed415355c27dd181f39 {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03076.WGS.N.hg38 C3N-03076 LSCC WGS blood_normal CPT0236470002 fd173e62-56bf-400c-a27f-4109dc0d92d5_wgs_gdc_realn.bam 144925177216 BAM harmonized CPTAC3 67ebae8e-90b8-46d9-a98a-aec6cd48fc07 3d400ce6af671d836d8ba94797b4ed5b {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03076.WGS.T C3N-03076 LSCC WGS tumor CPT0236420006 CPT0236420006.WholeGenome.RP-1303.bam 103800227186 BAM submitted_aligned CPTAC3 95f82e39-8ace-4231-a954-d3c590871391 6fa7e6281fc3470ac5f302e088449992 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.WGS.T.hg38 C3N-03076 LSCC WGS tumor CPT0236420006 dba1ce27-57d7-4430-af83-f44f7cf2b203_wgs_gdc_realn.bam 151198895596 BAM harmonized CPTAC3 a2be4eb8-4ecb-4d63-bb32-287fade4fcde 53d646d4e7fa810390eaa6a58e882ca3 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.WXS.A C3N-03076 LSCC WXS tissue_normal CPT0236430009 CPT0236430009.WholeExome.RP-1303.bam 18908698766 BAM submitted_aligned CPTAC3 d0058d16-eb15-4ed5-b10a-a4337212af93 732989783b67a915bc9a54dfd77f160d {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.WXS.A.hg38 C3N-03076 LSCC WXS tissue_normal CPT0236430009 0cecf91e-74ab-4e4b-93b4-4ea32fc0b1c1_wxs_gdc_realn.bam 26287305454 BAM harmonized CPTAC3 2940e6cd-809f-4dfd-839c-d27dbc1e4f60 ff405952eefa57c34bac3a79f43d2369 {"aliquot_tag": "ALQ_7e83c5f0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03076.WXS.N C3N-03076 LSCC WXS blood_normal CPT0236470002 CPT0236470002.WholeExome.RP-1303.bam 29372109811 BAM submitted_aligned CPTAC3 54f47a3f-9652-4c99-800c-ae96b7096afa b14e37e77c4784b295d254758a101797 {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03076.WXS.N.hg38 C3N-03076 LSCC WXS blood_normal CPT0236470002 fd173e62-56bf-400c-a27f-4109dc0d92d5_wxs_gdc_realn.bam 40495867933 BAM harmonized CPTAC3 ace21e30-003b-49dc-872f-eaa91c86810a 8818c4cf068067a4cf7952f53bec7d50 {"aliquot_tag": "ALQ_1cd1bab8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03076.WXS.T C3N-03076 LSCC WXS tumor CPT0236420006 CPT0236420006.WholeExome.RP-1303.bam 26230348551 BAM submitted_aligned CPTAC3 49ce40fb-c001-42fb-a744-1da1d62f115d 71c559733f33f1778c3e4b4f0dd1a4f9 {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03076.WXS.T.hg38 C3N-03076 LSCC WXS tumor CPT0236420006 dba1ce27-57d7-4430-af83-f44f7cf2b203_wxs_gdc_realn.bam 36607213627 BAM harmonized CPTAC3 d0ccfe79-5602-4b42-a886-e15b014b74c3 c2a6c30471a442d55712fbd58dcfe46f {"aliquot_tag": "ALQ_d35cf1d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.MethArray.Green.A C3N-03080 LUAD Methylation_Array tissue_normal CPT0209250006 203561620053_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 316e1540-2236-4362-af5d-6c2a53e4e148 87c0c810843e629da6dfd9682e2ca6e4 {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.MethArray.Green.T C3N-03080 LUAD Methylation_Array tumor CPT0209240006 203561620159_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 7cad4b8e-f0df-4829-9d7c-928e93b3fe31 e2f8729b2488584300c5e79105f536a7 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.MethArray.Red.A C3N-03080 LUAD Methylation_Array tissue_normal CPT0209250006 203561620053_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 514ce781-9b02-4f73-b8d1-7e3b4c869c79 fdecc9cb0221dfd22badf7f7ef6bea52 {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.MethArray.Red.T C3N-03080 LUAD Methylation_Array tumor CPT0209240006 203561620159_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 48c0c11c-7c79-4bed-9ab8-ad94fb89faf3 b57c87b5c95d9c7cba0e913f5298f9bd {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.miRNA-Seq.A.hg38 C3N-03080 LUAD miRNA-Seq tissue_normal CPT0209250009 a417e5f4-a52d-4840-9c68-40d46d600efe_mirnaseq_gdc_realn.bam 243596760 BAM harmonized CPTAC3 a7a1f91f-8378-498e-9c3a-67634a003e5c f85f77d32a55437761d674e9b034f948 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.miRNA-Seq.S26_L006_R1.A C3N-03080 LUAD miRNA-Seq tissue_normal CPT0209250009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACTCA_S26_L006_R1_001.unaln.bam 214502432 BAM S26_L006_R1 submitted_unaligned CPTAC3 8ea5ccf3-6cd8-444a-9d17-e580c3bc3142 fea6ca8aa4741ace7a6a43bb5454b21e {"aliquot_tag": "ALQ_5f5da447", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.miRNA-Seq.S7_L007_R1.T C3N-03080 LUAD miRNA-Seq tumor CPT0209240009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGCTAC_S7_L007_R1_001.unaln.bam 200236995 BAM S7_L007_R1 submitted_unaligned CPTAC3 0d555002-c695-4718-a764-13fa8f70e966 14734344530ede8a3237142d4b9cf95a {"aliquot_tag": "ALQ_623d8df7", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.miRNA-Seq.T.hg38 C3N-03080 LUAD miRNA-Seq tumor CPT0209240009 b0459e96-05ee-4005-9375-33053d937313_mirnaseq_gdc_realn.bam 220852438 BAM harmonized CPTAC3 db01b4e7-daf3-499e-828e-3a73ff98fdfd 382e846674ea831733ba9fee1ee0c7bd {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.RNA-Seq.chimeric.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.chimeric.gdc_realn.bam 37338669 BAM chimeric harmonized CPTAC3 f39fe48b-c328-4497-9feb-c4da2d76d3af 72deb8f5183f4e1df5385c5828c5cc83 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.RNA-Seq.chimeric.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.chimeric.gdc_realn.bam 34381938 BAM chimeric harmonized CPTAC3 02a9fa67-a3f0-42fa-9583-8a76a6a06060 ba957c7bf38d58e19ea99c01456f0eac {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.RNA-Seq.genomic.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.genomic.gdc_realn.bam 10546395059 BAM genomic harmonized CPTAC3 70a510df-9deb-4e1d-81b8-98c85d772502 8922511380a64c2035045f9a6dd9afb6 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.RNA-Seq.genomic.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.genomic.gdc_realn.bam 10961859757 BAM genomic harmonized CPTAC3 3d9772e3-5320-4937-a441-908dbdb66e7e ce789d55b32c3d80cbd48ebc0756b1d0 {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.RNA-Seq.S2_L001_R1.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R1_001.fastq.gz 4690559849 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 734aef7a-3a16-4318-b0d5-772fea337fed e46aa8dd62f7f2b4a472adb278ddf965 {"aliquot_tag": "ALQ_5f5da447", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.RNA-Seq.S2_L001_R2.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R2_001.fastq.gz 5156485456 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 70282169-1f00-49ac-85ee-7e1fa15aa4b8 a11765661f98a7f9a4b588036ce2fe1b {"aliquot_tag": "ALQ_5f5da447", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.RNA-Seq.S3_L001_R1.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R1_001.fastq.gz 4263271081 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 ad807ed1-3df7-4eb8-ae63-cbb6c2ecd6e1 2a34dd2ce610e66922a3b64f8cd06dd9 {"aliquot_tag": "ALQ_623d8df7", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.RNA-Seq.S3_L001_R2.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R2_001.fastq.gz 4860372361 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 3ef0e286-5822-416d-9edc-551b84c60d8a 3c069f6e07d8b5ac3c9b50863a7b2981 {"aliquot_tag": "ALQ_623d8df7", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.RNA-Seq.transcriptome.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.transcriptome.gdc_realn.bam 10343962817 BAM transcriptome harmonized CPTAC3 5d9b0c4e-b8c4-43bb-bb0a-d5d54a531927 c7770b6979069eb72c3ef52d5670dff8 {"aliquot_tag": "ALQ_5f5da447", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.RNA-Seq.transcriptome.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.transcriptome.gdc_realn.bam 9826052008 BAM transcriptome harmonized CPTAC3 c8505154-d83b-4819-8653-ae433af3c14f 9500929c45c8b5fb9ee2271b323cc6e3 {"aliquot_tag": "ALQ_623d8df7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.WGS.N C3N-03080 LUAD WGS blood_normal CPT0209290002 CPT0209290002.WholeGenome.RP-1303.bam 67946220095 BAM submitted_aligned CPTAC3 087630ba-8b4a-4d81-a66c-f2a9aa03df96 a483b027248228ed559acb42462bf03d {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03080.WGS.N.hg38 C3N-03080 LUAD WGS blood_normal CPT0209290002 98e20abb-8675-4c58-b729-d4e6c6c0a2ac_wgs_gdc_realn.bam 100146822480 BAM harmonized CPTAC3 50165bf1-3e52-4800-ad78-eb7ba887f5be 330a644ee325778fc7bd8e1c2199cd24 {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03080.WGS.T C3N-03080 LUAD WGS tumor CPT0209240006 CPT0209240006.WholeGenome.RP-1303.bam 98359550521 BAM submitted_aligned CPTAC3 0940f0e8-0674-44c6-a506-7123c825591f f83204d41c27c0504adffda181207b91 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.WGS.T.hg38 C3N-03080 LUAD WGS tumor CPT0209240006 0ed3cb3f-d683-48c2-a08e-a70b66701d24_wgs_gdc_realn.bam 145287676126 BAM harmonized CPTAC3 c241c9d3-e878-4fc2-9724-ce408f9f575b 797c5d1dc53f1b215878ea6659eb3162 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.WXS.A C3N-03080 LUAD WXS tissue_normal CPT0209250006 CPT0209250006.WholeExome.RP-1303.bam 22581382987 BAM submitted_aligned CPTAC3 86cf6bfa-4c63-4858-9017-e500e9705ec7 4c6711655b5558dcf8032def91fd6b52 {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.WXS.A.hg38 C3N-03080 LUAD WXS tissue_normal CPT0209250006 b9ea9ddf-0216-4cbf-aaa6-d104795cbe76_wxs_gdc_realn.bam 31637539357 BAM harmonized CPTAC3 e386a703-8f2f-4b18-aad4-c39cb6a14346 3a6264eee74ce2abc2508c47e4d9c6cd {"aliquot_tag": "ALQ_cfe2b9d6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03080.WXS.N C3N-03080 LUAD WXS blood_normal CPT0209290002 CPT0209290002.WholeExome.RP-1303.bam 29867779850 BAM submitted_aligned CPTAC3 f7501e4e-1b00-4538-9fb5-15a54fcf79a0 ac7337a5e09f25410dc0eefa132da997 {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03080.WXS.N.hg38 C3N-03080 LUAD WXS blood_normal CPT0209290002 98e20abb-8675-4c58-b729-d4e6c6c0a2ac_wxs_gdc_realn.bam 41247198875 BAM harmonized CPTAC3 b8c46d0d-4c69-4089-b722-b4f667974a1d fa7bf396d370ea346ddb766a5bdb0b5d {"aliquot_tag": "ALQ_d7f90ce", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03080.WXS.T C3N-03080 LUAD WXS tumor CPT0209240006 CPT0209240006.WholeExome.RP-1303.bam 24444558667 BAM submitted_aligned CPTAC3 6363942b-b459-4eb5-aa91-c571d3c5be25 ebe83041326c6553a32f1b864ac3abb8 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03080.WXS.T.hg38 C3N-03080 LUAD WXS tumor CPT0209240006 0ed3cb3f-d683-48c2-a08e-a70b66701d24_wxs_gdc_realn.bam 33965539340 BAM harmonized CPTAC3 e08187b6-6cdd-4ffd-8e65-606fba6f2e91 57c16da9474caf64118e8957e2b316f6 {"aliquot_tag": "ALQ_f2829066", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.MethArray.Green.A C3N-03086 PDA Methylation_Array tissue_normal CPT0209320007 203273630261_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f9c38534-20a3-4bf7-ba3e-d5411da57cdf e683870f29dafaf403408c1ddbe76e4a {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03086.MethArray.Green.T C3N-03086 PDA Methylation_Array tumor CPT0209310007 203561620008_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0c552f19-24c4-403f-bffe-2fcc2e95984d af77031275e3ef61dd85697bd2790d03 {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.MethArray.Red.A C3N-03086 PDA Methylation_Array tissue_normal CPT0209320007 203273630261_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 11a18260-7b79-415a-a9a9-8626809244b2 a0db2190ab446b264d85ee1c87e624e7 {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03086.MethArray.Red.T C3N-03086 PDA Methylation_Array tumor CPT0209310007 203561620008_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 3e1978d4-9207-4f9b-b4c5-c61add6283f6 6a92df36f14434a79d1c3d138a5fae6e {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.miRNA-Seq.S170_L007_R1.T C3N-03086 PDA miRNA-Seq tumor CPT0209310014 190828_UNC32-K00270_0200_BH7GVJBBXY_CAGGCG_S170_L007_R1_001.unaln.bam 173825437 BAM S170_L007_R1 submitted_unaligned CPTAC3 8976eca8-a185-4a17-b96a-fd06a0c4279a 2ac40a28375cebb131a2dd4e767a7f20 {"aliquot_tag": "ALQ_62b9cde", "sample": "S170", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.miRNA-Seq.T.hg38 C3N-03086 PDA miRNA-Seq tumor CPT0209310014 dc12593f-588d-48c9-a871-409bfd080502_mirnaseq_gdc_realn.bam 199187558 BAM harmonized CPTAC3 f3d73cc1-ac98-4a4a-8958-4c41feac147c 63aa8f5fd7af0c39938f2a609a6e0567 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.RNA-Seq.chimeric.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.chimeric.gdc_realn.bam 35433110 BAM chimeric harmonized CPTAC3 b9f7e672-a29d-4984-b44e-a420a52b2b02 b8c0f9ee78693b6f166ce62220d6b942 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.RNA-Seq.genomic.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.genomic.gdc_realn.bam 7700780094 BAM genomic harmonized CPTAC3 b5dc248e-b83d-43cc-a13d-cfd6a271ad67 94f7fadce5f2b2ef4a6fed6a01e1e3d2 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.RNA-Seq.S27_L007_R1.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R1_001.fastq.gz 3663477057 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 3d918449-c522-4a4e-8846-8d8f61ff618d 40e530a7e89ad6222439c9d293ba2e92 {"aliquot_tag": "ALQ_62b9cde", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.RNA-Seq.S27_L007_R2.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R2_001.fastq.gz 4207928137 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 761a3cf3-5ad7-4353-877e-19aee8358299 a32a5cc43697408ace84005c9b4bfa59 {"aliquot_tag": "ALQ_62b9cde", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.RNA-Seq.transcriptome.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.transcriptome.gdc_realn.bam 10429293572 BAM transcriptome harmonized CPTAC3 2dabb98a-c9b0-4873-ad26-fd03fa1897b5 1b9ff233da8eb5e67541a34b6ea61c78 {"aliquot_tag": "ALQ_62b9cde", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.WGS.N C3N-03086 PDA WGS blood_normal CPT0209360002 CPT0209360002.WholeGenome.RP-1303.bam 57486339521 BAM submitted_aligned CPTAC3 b1b50ed4-87ed-4357-a380-0750e05ebb9f c5be797a01593d260a03d67eef8c1007 {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03086.WGS.N.hg38 C3N-03086 PDA WGS blood_normal CPT0209360002 881588b7-980f-441f-af50-97129183b0e4_wgs_gdc_realn.bam 82665510544 BAM harmonized CPTAC3 b9ec89f1-e299-418c-9c70-c2ca6a7e563b 31f2f6291841521690ead7119a0b3b8e {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03086.WGS.T C3N-03086 PDA WGS tumor CPT0209310007 CPT0209310007.WholeGenome.RP-1303.bam 150739891572 BAM submitted_aligned CPTAC3 61eda7de-08b8-4638-9b69-5647f51e131e 1b7b95452fa2a165de27fe21ca894394 {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.WGS.T.hg38 C3N-03086 PDA WGS tumor CPT0209310007 728235ae-47f2-4422-8f47-e4d8fc573f04_wgs_gdc_realn.bam 219107729773 BAM harmonized CPTAC3 4c22fe2d-0dd3-4f6d-a09a-51d83fc9f45c acf6cf020105076e8029a29778cca69d {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.WXS.A C3N-03086 PDA WXS tissue_normal CPT0209320007 CPT0209320007.WholeExome.RP-1303.bam 31290732763 BAM submitted_aligned CPTAC3 f118ff00-1e9b-4cef-a387-3f416edbbe0e d12387c1e3a898280e511eeaed9fd99b {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03086.WXS.A.hg38 C3N-03086 PDA WXS tissue_normal CPT0209320007 6b2664d7-c1ab-40c7-958d-51b09c2e8e5b_wxs_gdc_realn.bam 43298308976 BAM harmonized CPTAC3 26e228a4-13eb-4443-92d3-ebab7efb717c a06dd8ce6006dbc175bc33d29435a834 {"aliquot_tag": "ALQ_c19986f5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03086.WXS.N C3N-03086 PDA WXS blood_normal CPT0209360002 CPT0209360002.WholeExome.RP-1303.bam 29174127681 BAM submitted_aligned CPTAC3 2b98301e-81ed-432e-89b5-5d18db530808 bd5343f76bf3deea063bb7babc760167 {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03086.WXS.N.hg38 C3N-03086 PDA WXS blood_normal CPT0209360002 881588b7-980f-441f-af50-97129183b0e4_wxs_gdc_realn.bam 39452401939 BAM harmonized CPTAC3 3fda5c3d-a966-45cc-8fe0-e7c3564f35fe 55af196ccaf39595d31ae5eb237bf5fb {"aliquot_tag": "ALQ_4473d4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03086.WXS.T C3N-03086 PDA WXS tumor CPT0209310007 CPT0209310007.WholeExome.RP-1303.bam 25481078119 BAM submitted_aligned CPTAC3 3942a4f7-576e-42b6-8ef7-fd5285586628 6729e847a058685ba548e38b9ca6658c {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03086.WXS.T.hg38 C3N-03086 PDA WXS tumor CPT0209310007 728235ae-47f2-4422-8f47-e4d8fc573f04_wxs_gdc_realn.bam 34655470881 BAM harmonized CPTAC3 c1ed21d2-2fc8-4be4-88ac-343f9db0b6ee 321246ee9d5ce2838dcffb60e5f29450 {"aliquot_tag": "ALQ_8639fc25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.MethArray.Green.T C3N-03088 GBM Methylation_Array tumor CPT0209440005 203219720211_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 135a44b7-5f82-461e-b11e-8c1c4d4c0f73 4c9e613e7d62d31655a8bcf5483a15b8 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.MethArray.Red.T C3N-03088 GBM Methylation_Array tumor CPT0209440005 203219720211_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 8131057b-682b-42fd-a81e-5e6f9337ca92 936249f10b2e086f146a58584bcbc383 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.miRNA-Seq.S35_L008_R1.T C3N-03088 GBM miRNA-Seq tumor CPT0209440008 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L008_R1_001.unaln.bam 215618509 BAM S35_L008_R1 submitted_unaligned CPTAC3 449f2617-ed59-40d4-9091-6d3d52f30ebe 6e052aa0be1ce9354e5b7b1e35e91716 {"aliquot_tag": "ALQ_c3635e7c", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.miRNA-Seq.T.hg38 C3N-03088 GBM miRNA-Seq tumor CPT0209440008 099a1c9a-18ad-4cd6-aff8-469e21502f3d_mirnaseq_gdc_realn.bam 243581270 BAM harmonized CPTAC3 5cb21c7c-62d1-4051-89e5-43732341df34 954f5d55ff69d7931b2c55ae833d93a8 {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.RNA-Seq.chimeric.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.chimeric.gdc_realn.bam 48495600 BAM chimeric harmonized CPTAC3 70b17963-8b5f-4c99-a7f7-f26967d8a6e4 8ca6eb04223bd0d2a2f59273036af660 {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.RNA-Seq.genomic.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.genomic.gdc_realn.bam 9622206522 BAM genomic harmonized CPTAC3 82252a48-4fcc-49d9-a037-ebacd078d343 a1532d6b20f99f17f676e5e710b5431e {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.RNA-Seq.S9_L004_R1.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R1_001.fastq.gz 4440225897 FASTQ S9_L004_R1 submitted_unaligned CPTAC3 6a007bb3-c970-4fc3-80d3-4511ef0c140c c1529f9849adb88ddba70392b6409e77 {"aliquot_tag": "ALQ_c3635e7c", "sample": "S9", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.RNA-Seq.S9_L004_R2.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R2_001.fastq.gz 4652682779 FASTQ S9_L004_R2 submitted_unaligned CPTAC3 c28802fe-5b81-45ae-878d-deaab3c7e4b7 d2df709eb8d32501f70a120b34de3267 {"aliquot_tag": "ALQ_c3635e7c", "sample": "S9", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.RNA-Seq.transcriptome.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.transcriptome.gdc_realn.bam 13332652063 BAM transcriptome harmonized CPTAC3 d1081d74-c000-412f-a029-8b999c8b4c5e 3e2ff51f4ef1a89b4308ed333615c469 {"aliquot_tag": "ALQ_c3635e7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.WGS.N C3N-03088 GBM WGS blood_normal CPT0209480002 CPT0209480002.WholeGenome.RP-1303.bam 65777731967 BAM submitted_aligned CPTAC3 a00e6ef8-f6d9-4b54-b112-e7382e9e44fb f361d35df042ee4e8595cab2f089aca6 {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03088.WGS.N.hg38 C3N-03088 GBM WGS blood_normal CPT0209480002 36c1c91c-84e9-4021-819e-ccb9d6f8f637_wgs_gdc_realn.bam 97201246792 BAM harmonized CPTAC3 9238b256-117e-46b9-9f38-b6a08a09cc30 150a5e3a4bef4fcb3dbf7458c84f7a9d {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03088.WGS.T C3N-03088 GBM WGS tumor CPT0209440005 CPT0209440005.WholeGenome.RP-1303.bam 57702578123 BAM submitted_aligned CPTAC3 669092bb-9223-40b4-8f86-73c885f1528c d172ca21e357a5571bdd3b41c2c57b75 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.WGS.T.hg38 C3N-03088 GBM WGS tumor CPT0209440005 ecd45ec0-57dd-4b73-a0eb-52a1d54d5c17_wgs_gdc_realn.bam 85717530907 BAM harmonized CPTAC3 e2789d7b-483b-4c2f-a4cf-30313aefc7c4 2e5b852d9885297cb68a7e2da1baaf9c {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.WXS.N C3N-03088 GBM WXS blood_normal CPT0209480002 CPT0209480002.WholeExome.RP-1303.bam 25084469692 BAM submitted_aligned CPTAC3 3ae5b299-448f-43b6-af6a-6650c971e85a f69e41596ee9dfcd923b150f17aeb692 {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03088.WXS.N.hg38 C3N-03088 GBM WXS blood_normal CPT0209480002 36c1c91c-84e9-4021-819e-ccb9d6f8f637_wxs_gdc_realn.bam 35419905397 BAM harmonized CPTAC3 9e51b077-3b4a-4bfa-a005-882b95040ecc d74c5bdb311806369d9384ea6397c7e9 {"aliquot_tag": "ALQ_e6465a63", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03088.WXS.T C3N-03088 GBM WXS tumor CPT0209440005 CPT0209440005.WholeExome.RP-1303.bam 20499979983 BAM submitted_aligned CPTAC3 f81003c5-29e0-4412-bdfa-d0b733b88980 2e3e0ba49e0b8ef41d20b6ef72245193 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03088.WXS.T.hg38 C3N-03088 GBM WXS tumor CPT0209440005 ecd45ec0-57dd-4b73-a0eb-52a1d54d5c17_wxs_gdc_realn.bam 28632353256 BAM harmonized CPTAC3 6252264f-0d8e-49d3-8882-680efcf3827a eacd5836145f5773ecbc4e9fb00aab70 {"aliquot_tag": "ALQ_bdd222c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.MethArray.Green.A C3N-03092 LSCC Methylation_Array tissue_normal CPT0197520006 203220070217_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 fd1799c9-a1c1-4dec-b4b5-8a88a9f2bd84 d463db59b24e5be8b1d5509073cf0075 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.MethArray.Green.T C3N-03092 LSCC Methylation_Array tumor CPT0197480006 203220070100_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 320f0100-e11a-4737-b89b-1352821bb40d dd41f861ff0dfc9f27f420301255aed2 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.MethArray.Red.A C3N-03092 LSCC Methylation_Array tissue_normal CPT0197520006 203220070217_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6ba6c9e2-141d-43b1-af35-f70539752aac 7aab92887800e6395c6e974cf3387453 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.MethArray.Red.T C3N-03092 LSCC Methylation_Array tumor CPT0197480006 203220070100_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 3457f755-80b3-4ec8-a31c-c069b8141f97 1c41a020f773858c97fbf6378dd39a15 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.miRNA-Seq.A.hg38 C3N-03092 LSCC miRNA-Seq tissue_normal CPT0197520009 40c7784d-bef7-47b6-a417-74e29122e927_mirnaseq_gdc_realn.bam 213339255 BAM harmonized CPTAC3 fa22c015-1cf4-487f-b7d1-3b935c23aeaf 7a7f0d6e123ccaa0dc3badd6c56dd709 {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.miRNA-Seq.S15_L001_R1.T C3N-03092 LSCC miRNA-Seq tumor CPT0197480009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCAACA_S15_L001_R1_001.unaln.bam 179669627 BAM S15_L001_R1 submitted_unaligned CPTAC3 901f821f-60bc-4be1-8483-17fdf22db9da 1674437661dc5942afc7e2ad4f12afd4 {"aliquot_tag": "ALQ_769df58", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.miRNA-Seq.S17_L003_R1.A C3N-03092 LSCC miRNA-Seq tissue_normal CPT0197520009 190206_UNC31-K00269_0191_AH2WY5BBXY_CATGGC_S17_L003_R1_001.unaln.bam 192584289 BAM S17_L003_R1 submitted_unaligned CPTAC3 81440cff-c810-47c0-839b-82c849ee94e2 e45d1045449cb75114481deda8ac82e7 {"aliquot_tag": "ALQ_8685145c", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.miRNA-Seq.T.hg38 C3N-03092 LSCC miRNA-Seq tumor CPT0197480009 94f4b8a4-e3e0-402c-8c77-ea0d95857a0f_mirnaseq_gdc_realn.bam 199707174 BAM harmonized CPTAC3 f24c26a1-4edc-454f-bbe9-466e27506c43 85848f08757782815e10a934aeb75706 {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.RNA-Seq.chimeric.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.chimeric.gdc_realn.bam 63731568 BAM chimeric harmonized CPTAC3 af7a0459-90b7-415b-bce1-fc95802390d1 d5689265053b6a8a322a7de34e42fd7f {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.RNA-Seq.chimeric.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.chimeric.gdc_realn.bam 70117071 BAM chimeric harmonized CPTAC3 6889e0a8-57db-4b7d-ad0d-87bbf1a2074f 6e0337e6ae70439820400b60df44073d {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.RNA-Seq.genomic.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.genomic.gdc_realn.bam 8094632776 BAM genomic harmonized CPTAC3 ce068033-7936-4751-84d5-7949117385cf d5ada8a44115ce1a8aac72481455ac79 {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.RNA-Seq.genomic.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.genomic.gdc_realn.bam 8925108618 BAM genomic harmonized CPTAC3 8c13a432-d758-4249-b3e9-360b70863b87 3809a702bdbb9827bbd3bf0dd13a6586 {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.RNA-Seq.S11_L003_R1.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3744159218 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 0433577e-e787-4c63-adc1-2ef179880630 facc1344800f3a5c49287788a405b42e {"aliquot_tag": "ALQ_8685145c", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.RNA-Seq.S11_L003_R2.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4132832278 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 a1708f79-7f69-4f43-a21c-c33ae1360110 b05bff5b5aec7d0f4b563aed9b5623ad {"aliquot_tag": "ALQ_8685145c", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.RNA-Seq.S3_L001_R1.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3774654674 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 d5399bad-144d-41e8-85bb-d6fffb1c0576 a706ccf2b917729a33e578cf59d5d3c0 {"aliquot_tag": "ALQ_769df58", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.RNA-Seq.S3_L001_R2.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4180670027 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 69c838f2-50ed-4ef2-8916-36e907fa0c7d d1c9e61acd4203042e2a37eee22bbc67 {"aliquot_tag": "ALQ_769df58", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.RNA-Seq.transcriptome.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.transcriptome.gdc_realn.bam 9095532531 BAM transcriptome harmonized CPTAC3 e8a6523b-8e05-42ce-b13e-48b75a7d2418 0250f57d0d98f0a09faa94cc90188ddb {"aliquot_tag": "ALQ_8685145c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.RNA-Seq.transcriptome.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.transcriptome.gdc_realn.bam 10706445565 BAM transcriptome harmonized CPTAC3 840d8afc-1b9d-4a19-b01f-bf0b8df37d9b 86c9790efd14eb89db6a065def442085 {"aliquot_tag": "ALQ_769df58", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.WGS.N C3N-03092 LSCC WGS blood_normal CPT0197660002 CPT0197660002.WholeGenome.RP-1303.bam 50233346465 BAM submitted_aligned CPTAC3 9fe71701-59bd-4f07-9841-db4779f54690 08f8f41a08f8996b0eb5459a2125942b {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03092.WGS.N.hg38 C3N-03092 LSCC WGS blood_normal CPT0197660002 7d908a13-1a96-4c8a-a8ee-2574360aeaff_wgs_gdc_realn.bam 73753015124 BAM harmonized CPTAC3 414ce4ab-48ea-4cbf-b375-31b33e82e22c a9bbf8d0e47c46f0a36d4772d0c63bb5 {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03092.WGS.T C3N-03092 LSCC WGS tumor CPT0197480006 CPT0197480006.WholeGenome.RP-1303.bam 138187368150 BAM submitted_aligned CPTAC3 67916b2f-e883-4a7a-98c1-6e7d3954bf13 8211ea989dfdeb60c45b42adde2289a1 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.WGS.T.hg38 C3N-03092 LSCC WGS tumor CPT0197480006 47d67c08-4bdf-4fed-a0fb-fae09f213c99_wgs_gdc_realn.bam 200603476272 BAM harmonized CPTAC3 d79c9751-c8a7-41b2-aa80-3bdf991522d2 93399f5ac7e1b619e3ddc3b1e69167d2 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.WXS.A C3N-03092 LSCC WXS tissue_normal CPT0197520006 CPT0197520006.WholeExome.RP-1303.bam 25152711034 BAM submitted_aligned CPTAC3 d53351e5-2269-4ef4-9cd6-dd2ffabf6124 a3ca2db55665c46af4387ec19b3a0f31 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.WXS.A.hg38 C3N-03092 LSCC WXS tissue_normal CPT0197520006 ed460ca6-c5e8-407e-ae40-0857075f21f3_wxs_gdc_realn.bam 34798922667 BAM harmonized CPTAC3 17b1bbe8-915a-4d07-bbb6-9f11d11368b1 d2e676359c68b2c9a4570c12e3e0fd23 {"aliquot_tag": "ALQ_163a09cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03092.WXS.N C3N-03092 LSCC WXS blood_normal CPT0197660002 CPT0197660002.WholeExome.RP-1303.bam 24669761785 BAM submitted_aligned CPTAC3 7d90cbbb-0ab1-4a79-925e-1012dc82fb5f a5c32677a3253fadd1e7b094cd8cad40 {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03092.WXS.N.hg38 C3N-03092 LSCC WXS blood_normal CPT0197660002 7d908a13-1a96-4c8a-a8ee-2574360aeaff_wxs_gdc_realn.bam 33420898432 BAM harmonized CPTAC3 2fa619d1-516a-49aa-a28e-77b4610cc6a3 84d8762c9a690e140947829474966d71 {"aliquot_tag": "ALQ_624319ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03092.WXS.T C3N-03092 LSCC WXS tumor CPT0197480006 CPT0197480006.WholeExome.RP-1303.bam 22145913445 BAM submitted_aligned CPTAC3 7479f448-1d1c-465f-86e7-789afa0cf05a 89ab5f6ec1b1191366fe4f5e011e8257 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03092.WXS.T.hg38 C3N-03092 LSCC WXS tumor CPT0197480006 47d67c08-4bdf-4fed-a0fb-fae09f213c99_wxs_gdc_realn.bam 30453213996 BAM harmonized CPTAC3 cd621009-63dc-44af-8673-9199c3e5920f 54c6faf1bc0662881345867ee78cec21 {"aliquot_tag": "ALQ_97d6c2c9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.MethArray.Green.A C3N-03093 LSCC Methylation_Array tissue_normal CPT0197860006 203219650136_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 5a0342c1-514c-46ef-ba2e-3fc1b84ece18 0a27d459474be152b775621d454db740 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.MethArray.Green.T C3N-03093 LSCC Methylation_Array tumor CPT0197740006 203219750071_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 1689f27e-d10c-4d41-b4f6-6e3f92090376 d271ac19bcb7395f2802f88279b6c622 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.MethArray.Red.A C3N-03093 LSCC Methylation_Array tissue_normal CPT0197860006 203219650136_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 e9e8b995-395f-4f49-9f91-3dfd8cd46c93 d5f14275646f9e970ff7ffae4efe8d60 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.MethArray.Red.T C3N-03093 LSCC Methylation_Array tumor CPT0197740006 203219750071_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 484af8d0-9882-4631-83c4-f9a23450163a d67f40700ca474d846e45e2ce27aaafd {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.miRNA-Seq.A.hg38 C3N-03093 LSCC miRNA-Seq tissue_normal CPT0197860009 a1e480f8-73ec-4409-9a70-4eead8c42ddc_mirnaseq_gdc_realn.bam 332618767 BAM harmonized CPTAC3 ca9914ce-0443-45c1-bba4-8a84e45c225e 69d7679c503434f53e77d5f02789fa74 {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.miRNA-Seq.S14_L001_R1.T C3N-03093 LSCC miRNA-Seq tumor CPT0197740009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGGAAT_S14_L001_R1_001.unaln.bam 208898987 BAM S14_L001_R1 submitted_unaligned CPTAC3 e8539eab-2156-4e10-9c8c-74a4e7d5a8c3 06d9f8569212fdf32705e2d098f1de8c {"aliquot_tag": "ALQ_440d40f7", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.miRNA-Seq.S29_L002_R1.A C3N-03093 LSCC miRNA-Seq tissue_normal CPT0197860009 190813_UNC32-K00270_0196_AH5MCWBBXY_TCCCGA_S29_L002_R1_001.unaln.bam 292853139 BAM S29_L002_R1 submitted_unaligned CPTAC3 5b07513a-dba0-45c9-b123-09b30f6f0606 02710f1cb08a2e0d997c219ab3296c21 {"aliquot_tag": "ALQ_cf9ba142", "sample": "S29", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.miRNA-Seq.T.hg38 C3N-03093 LSCC miRNA-Seq tumor CPT0197740009 d3c94de2-dbbe-46f2-aacf-d848be1593ad_mirnaseq_gdc_realn.bam 226913614 BAM harmonized CPTAC3 71116b93-46bd-4249-84ca-941f90994626 e055492594a45604d302714713988c93 {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.RNA-Seq.chimeric.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.chimeric.gdc_realn.bam 78901141 BAM chimeric harmonized CPTAC3 30db42c8-4131-47cd-bd29-59a28ac67354 04e42136ea45e66852a47061e21dfca4 {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.RNA-Seq.chimeric.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.chimeric.gdc_realn.bam 92014497 BAM chimeric harmonized CPTAC3 b8324c4d-7865-49dc-9a76-e8e5740cff5d 5059f0f7f23831062c95e5b708154dbc {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.RNA-Seq.genomic.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.genomic.gdc_realn.bam 8252152052 BAM genomic harmonized CPTAC3 e68e4b72-f6c3-4073-94cd-d7a190f5c9da 2b264f48de500374609400f2b6f40a2a {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.RNA-Seq.genomic.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.genomic.gdc_realn.bam 8690914086 BAM genomic harmonized CPTAC3 bf45da6d-1596-4dd3-a337-4305dcc05e6e cd083bf06cdff53ccd0e5319eaf8a19a {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.RNA-Seq.S10_L003_R1.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3623811658 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 4bd91bf6-09b1-46a9-b033-f3b3656523e1 607d454dfd724801cc890711d3659300 {"aliquot_tag": "ALQ_cf9ba142", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.RNA-Seq.S10_L003_R2.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4199432680 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 5f53ce1f-acdf-4108-b789-819849706795 e6f220fd50135b995d9fc10561616dda {"aliquot_tag": "ALQ_cf9ba142", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.RNA-Seq.S2_L001_R1.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3533510834 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 bc716734-dbf0-4fa5-9a37-c104857a9766 4355436716648b087235bd1a66925ba1 {"aliquot_tag": "ALQ_440d40f7", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.RNA-Seq.S2_L001_R2.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3865247948 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 9916c1f0-9378-4125-bb73-5cd18096344e cbd69e06b1d447f486407dc8d44d4f2e {"aliquot_tag": "ALQ_440d40f7", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.RNA-Seq.transcriptome.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.transcriptome.gdc_realn.bam 8702290298 BAM transcriptome harmonized CPTAC3 85805904-9937-49ed-924f-bf31c0f3403f 6572a4404f848aa5d08008cd2a09d50e {"aliquot_tag": "ALQ_cf9ba142", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.RNA-Seq.transcriptome.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.transcriptome.gdc_realn.bam 9061350565 BAM transcriptome harmonized CPTAC3 0794f029-9280-47a1-be14-315e9730d2e6 92e83b60837af5ab3b37b164a31ca635 {"aliquot_tag": "ALQ_440d40f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.WGS.N C3N-03093 LSCC WGS blood_normal CPT0198000002 CPT0198000002.WholeGenome.RP-1303.bam 109740346429 BAM submitted_aligned CPTAC3 f1d0e8a9-55a2-4be0-b5f0-af2364106ba7 b57b3dc8632d12b7a65f3e9707ccf5e1 {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03093.WGS.N.hg38 C3N-03093 LSCC WGS blood_normal CPT0198000002 b52dfbb4-71a1-40b5-8f03-56122d428afd_wgs_gdc_realn.bam 158944152577 BAM harmonized CPTAC3 61a735df-47bf-471d-8893-f0bbcfd04763 661e0688d429c0ec33c8acf3a0c7e86a {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03093.WGS.T C3N-03093 LSCC WGS tumor CPT0197740006 CPT0197740006.WholeGenome.RP-1303.bam 57131983513 BAM submitted_aligned CPTAC3 9ba0cf6c-b3da-4cdb-b8b2-e1eff3b0a3d9 a83475e774b9f13da46e5586fcbe0e69 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.WGS.T.hg38 C3N-03093 LSCC WGS tumor CPT0197740006 ad027991-1119-4114-bd08-47af71ae25e5_wgs_gdc_realn.bam 83966814691 BAM harmonized CPTAC3 ae09d5fa-f718-4aa7-8279-237a7ef4f86f f0c928425895180bd7cf84a4551b8ed0 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.WXS.A C3N-03093 LSCC WXS tissue_normal CPT0197860006 CPT0197860006.WholeExome.RP-1303.bam 20323722566 BAM submitted_aligned CPTAC3 69590603-f7be-4d40-b241-f7695070d54b 585b75c71def28a03e6ec4f910c8ffe0 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.WXS.A.hg38 C3N-03093 LSCC WXS tissue_normal CPT0197860006 d91e9b59-cd2f-4fab-9346-1b8668cbb8a8_wxs_gdc_realn.bam 27451998927 BAM harmonized CPTAC3 a871897a-f96f-49c4-b110-84043c87e9bd 46bb97d6ac513ed55d05bc554f3908d9 {"aliquot_tag": "ALQ_5f24bcd3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03093.WXS.N C3N-03093 LSCC WXS blood_normal CPT0198000002 CPT0198000002.WholeExome.RP-1303.bam 17084220995 BAM submitted_aligned CPTAC3 b1f99967-48a3-46af-bd49-80006362703c bbb5343b129a1426e73373cf0d168ad7 {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03093.WXS.N.hg38 C3N-03093 LSCC WXS blood_normal CPT0198000002 b52dfbb4-71a1-40b5-8f03-56122d428afd_wxs_gdc_realn.bam 24048216533 BAM harmonized CPTAC3 5d1685ea-6990-4b65-8a0a-f612b53dd03e 65a6759081880d6fa53ab1cf9ce3acab {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03093.WXS.T C3N-03093 LSCC WXS tumor CPT0197740006 CPT0197740006.WholeExome.RP-1303.bam 23000567980 BAM submitted_aligned CPTAC3 bc711fbc-735b-4755-8c0b-a34595670c6f 3b0828382716ab90952be0763b92892b {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03093.WXS.T.hg38 C3N-03093 LSCC WXS tumor CPT0197740006 ad027991-1119-4114-bd08-47af71ae25e5_wxs_gdc_realn.bam 31249136420 BAM harmonized CPTAC3 6655cf18-88ae-46c7-94bc-2124ee4ce094 36c5e0fcc95ab5758c67284cf10d8285 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.MethArray.Green.A C3N-03173 PDA Methylation_Array tissue_normal CPT0186050007 203561450102_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 35510f79-e226-409c-9b6c-fca0acdfc77b dd0429819d8954139f706fab3fe40564 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.MethArray.Green.T C3N-03173 PDA Methylation_Array tumor CPT0186040013 203561450014_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 26107843-0e59-4a39-a10d-a2b48c6368a1 0d5d47e9afe2950b7ec6cd0487a1200d {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.MethArray.Red.A C3N-03173 PDA Methylation_Array tissue_normal CPT0186050007 203561450102_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 bca9c0cf-d5fc-411c-bdea-058785578fc5 8d8706e304e92d21df9249d8ddbc31b2 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.MethArray.Red.T C3N-03173 PDA Methylation_Array tumor CPT0186040013 203561450014_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 ed71f21f-6ff5-46ee-a937-123782813bb0 6f6c56e9174320a8ad1def3534991d13 {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.miRNA-Seq.A.hg38 C3N-03173 PDA miRNA-Seq tissue_normal CPT0186050010 554dc1b3-932d-401b-81ae-a41ff31480ad_mirnaseq_gdc_realn.bam 539609848 BAM harmonized CPTAC3 47c614f2-1003-4704-a6af-a2a0bc07e949 0406933be9824bed6fff94452c635cec {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.miRNA-Seq.S12_L003_R1.T C3N-03173 PDA miRNA-Seq tumor CPT0186040010 190813_UNC32-K00270_0196_AH5MCWBBXY_ATTCCT_S12_L003_R1_001.unaln.bam 214237806 BAM S12_L003_R1 submitted_unaligned CPTAC3 25d7020e-cab3-41b2-9804-f49b028615f8 fa86a487bca56f5af8f4dbdf023170b6 {"aliquot_tag": "ALQ_5312f280", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.miRNA-Seq.S22_L003_R1.A C3N-03173 PDA miRNA-Seq tissue_normal CPT0186050010 190813_UNC32-K00270_0196_AH5MCWBBXY_CGGAAT_S22_L003_R1_001.unaln.bam 477648630 BAM S22_L003_R1 submitted_unaligned CPTAC3 5fc6c39e-50cc-445a-bcb4-3185d870da46 de8fc8e6fcb1b6b5730cf4b13368aa49 {"aliquot_tag": "ALQ_6e72db30", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.miRNA-Seq.T.hg38 C3N-03173 PDA miRNA-Seq tumor CPT0186040010 68f10894-282e-4a7f-b33d-a090c9441f08_mirnaseq_gdc_realn.bam 244402869 BAM harmonized CPTAC3 4962433c-8282-418d-a7b7-9b8030e67397 c5deec91e61b1824eb51f3ce7a879b61 {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.RNA-Seq.chimeric.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.chimeric.gdc_realn.bam 34844426 BAM chimeric harmonized CPTAC3 28e93704-ad30-438c-9e49-4aaf86b5544b 51e6c51ca8dad5779bd0a7e9f6a307ff {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.RNA-Seq.chimeric.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.chimeric.gdc_realn.bam 42694648 BAM chimeric harmonized CPTAC3 3d8efe19-4e8f-4282-b577-e417bab1fbd9 0acd000d86999ab4325979e390f7ecdf {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.RNA-Seq.genomic.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.genomic.gdc_realn.bam 7141937358 BAM genomic harmonized CPTAC3 29aa6471-1d8e-4a84-9d80-9a774761d1a9 b83958275cec54a447f640cafdf976a7 {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.RNA-Seq.genomic.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.genomic.gdc_realn.bam 9054039193 BAM genomic harmonized CPTAC3 4cd36f6a-3e56-4712-97b3-32356d25ef8d 2e8fb7a63929f531c3a5558543d9cdc3 {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.RNA-Seq.S21_L006_R1.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R1_001.fastq.gz 3156533483 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 3cc111fa-a35b-4d22-9537-d26f91788b33 edae608f77cacdd7747e2b18e6d2c7c7 {"aliquot_tag": "ALQ_6e72db30", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.RNA-Seq.S21_L006_R2.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R2_001.fastq.gz 3695447076 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 214d357b-8e8e-4fa9-ac51-e0543c1b85cb e23af47a11772f763065fe73cf7abf4c {"aliquot_tag": "ALQ_6e72db30", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.RNA-Seq.S24_L007_R1.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R1_001.fastq.gz 4243130759 FASTQ S24_L007_R1 submitted_unaligned CPTAC3 9b57c2ff-046e-4890-b297-78b781681c4c 0d60a65ba39fabbaaada54ebeb3f8ba5 {"aliquot_tag": "ALQ_5312f280", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.RNA-Seq.S24_L007_R2.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R2_001.fastq.gz 4810406574 FASTQ S24_L007_R2 submitted_unaligned CPTAC3 5c17c0fe-363f-4d67-b655-e6113c9e375d c7b4682a9b3fb2a946d33a4b2f69c9a6 {"aliquot_tag": "ALQ_5312f280", "sample": "S24", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.RNA-Seq.transcriptome.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.transcriptome.gdc_realn.bam 7648761470 BAM transcriptome harmonized CPTAC3 6662ebd3-6290-4136-94b4-53a6fafb4f21 e5c95cb95b1ec1621555e54dfd21a06e {"aliquot_tag": "ALQ_6e72db30", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.RNA-Seq.transcriptome.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.transcriptome.gdc_realn.bam 10998079787 BAM transcriptome harmonized CPTAC3 2c4d4b8e-7bf8-4acc-b216-6f79d5e48d60 78478613fc3a39d404e0c4549776ef29 {"aliquot_tag": "ALQ_5312f280", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.WGS.N C3N-03173 PDA WGS blood_normal CPT0187290002 CPT0187290002.WholeGenome.RP-1303.bam 69827861271 BAM submitted_aligned CPTAC3 f915aeee-76fe-497d-b1cb-fe1ef56d99d0 f4fe4cf8dc77140f49ba8f174eacb245 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03173.WGS.N.hg38 C3N-03173 PDA WGS blood_normal CPT0187290002 6e8cc228-a3ef-4e63-95c5-1aaa5976f987_wgs_gdc_realn.bam 100768403814 BAM harmonized CPTAC3 1591620d-a9f6-4ee5-aa22-83e69bb03fe6 c652866906e2560b6fa2f205b373c103 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03173.WGS.T C3N-03173 PDA WGS tumor CPT0186040013 CPT0186040013.WholeGenome.RP-1303.PDO-18613.bam 120902172333 BAM submitted_aligned CPTAC3 f24c4f76-9406-4426-a230-e37dcc15c39e 5f6c57c73185e64aad5423da7d045b68 {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.WGS.T.hg38 C3N-03173 PDA WGS tumor CPT0186040013 73bca6e6-5f02-4756-af7d-6b5eed76c999_wgs_gdc_realn.bam 176920888955 BAM harmonized CPTAC3 6e174093-43bc-48b2-a0a2-abdbc554b8c8 e4a9fa74f2cb156a376150aa0501fd9f {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.WXS.A C3N-03173 PDA WXS tissue_normal CPT0186050007 CPT0186050007.WholeExome.RP-1303.bam 21392447175 BAM submitted_aligned CPTAC3 5001b90d-b572-4de7-b882-d896b9a8a261 fd9ea7e2fed1a862d46a80f9a7bdf5c3 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.WXS.A.hg38 C3N-03173 PDA WXS tissue_normal CPT0186050007 638c8cbe-c0c5-45fa-854d-eff395a728c0_wxs_gdc_realn.bam 29542907021 BAM harmonized CPTAC3 39c28a05-d5fe-455a-944e-213520d71b58 cd9918d0522dfb5be5f31dc149ee0c86 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03173.WXS.N C3N-03173 PDA WXS blood_normal CPT0187290002 CPT0187290002.WholeExome.RP-1303.bam 26592741320 BAM submitted_aligned CPTAC3 516ed3eb-79ca-4b75-89b9-581825fdd3d2 b832566d3274ef017f107c9284fe8f48 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03173.WXS.N.hg38 C3N-03173 PDA WXS blood_normal CPT0187290002 6e8cc228-a3ef-4e63-95c5-1aaa5976f987_wxs_gdc_realn.bam 36344614847 BAM harmonized CPTAC3 e860bcb0-7721-4daa-aa48-a70e664f6ebf 3ab581176e6d43fa794709fb14a4c9b8 {"aliquot_tag": "ALQ_b728cce3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03173.WXS.T C3N-03173 PDA WXS tumor CPT0186040013 CPT0186040013.WholeExome.RP-1303.bam 24220463410 BAM submitted_aligned CPTAC3 a9d660c5-8e36-42e2-95c8-ab8fe231d60a 82e1d3eae92a25ed08089f00238aa81a {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03173.WXS.T.hg38 C3N-03173 PDA WXS tumor CPT0186040013 73bca6e6-5f02-4756-af7d-6b5eed76c999_wxs_gdc_realn.bam 33126947600 BAM harmonized CPTAC3 88c32582-6882-48cd-a14c-04cf54a84c63 b1d3df92f859f59595d489a0012f1ae5 {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.miRNA-Seq.S26_L004_R1.T C3N-03180 GBM miRNA-Seq tumor CPT0206450006 181219_UNC31-K00269_0173_BHYGJJBBXX_ATTCCT_S26_L004_R1_001.unaln.bam 223446234 BAM S26_L004_R1 submitted_unaligned CPTAC3 183a90a4-4aba-4093-9b8c-6d86a2531b8c b0984982dae06887de29e7ad4d5cf96b {"aliquot_tag": "ALQ_eff32a22", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.miRNA-Seq.T.hg38 C3N-03180 GBM miRNA-Seq tumor CPT0206450006 0ab9fc8a-85de-4243-aa5b-818673c699b2_mirnaseq_gdc_realn.bam 246204106 BAM harmonized CPTAC3 a9069373-e397-4664-ac66-483b6fddcd57 6e9684f4f5255680363d731299bb5947 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.RNA-Seq.chimeric.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.chimeric.gdc_realn.bam 179304429 BAM chimeric harmonized CPTAC3 30ca3c79-f0b2-4356-a5a8-1a595f320174 7a1a747a6d637b26063b5590d48fca70 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.RNA-Seq.genomic.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.genomic.gdc_realn.bam 7595872394 BAM genomic harmonized CPTAC3 d4c46bf2-296f-4d4a-9a8d-6ecb164c3cb6 34d179fad3c40acaeca4b931f8b99649 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.RNA-Seq.S3_L008_R1.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R1_001.fastq.gz 3432824481 FASTQ S3_L008_R1 submitted_unaligned CPTAC3 94910b4a-6541-4491-af24-64b4b5209f4e 09a5e42306ffc12f21d903b8ee5b9bda {"aliquot_tag": "ALQ_eff32a22", "sample": "S3", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.RNA-Seq.S3_L008_R2.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R2_001.fastq.gz 3531880668 FASTQ S3_L008_R2 submitted_unaligned CPTAC3 3935ae0d-87c0-4ed0-88bd-fc1e45733f11 b557382ffe9c7004f42e17d543db8154 {"aliquot_tag": "ALQ_eff32a22", "sample": "S3", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.RNA-Seq.transcriptome.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.transcriptome.gdc_realn.bam 10231904319 BAM transcriptome harmonized CPTAC3 f49d2e00-e6e0-456b-b0c1-60ad4abd5894 65d515c19a803de79c34cb9c8a51ff72 {"aliquot_tag": "ALQ_eff32a22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.WGS.N C3N-03180 GBM WGS blood_normal CPT0206500002 CPT0206500002.WholeGenome.RP-1303.bam 56557163572 BAM submitted_aligned CPTAC3 2a46c639-a598-441f-a78c-1b8b7226f35a f7c601cc05c05e36e029665f90d6df70 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03180.WGS.N.hg38 C3N-03180 GBM WGS blood_normal CPT0206500002 edf472d8-84a9-455a-86a1-2b6c5c087389_wgs_gdc_realn.bam 83598139567 BAM harmonized CPTAC3 dd46c594-18fb-4f74-8dc4-89ed1ebede3e 7e9d17ef52d45ddc17ecabf63f496ba7 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03180.WGS.T C3N-03180 GBM WGS tumor CPT0206450009 CPT0206450009.WholeGenome.RP-1303.bam 80423535177 BAM submitted_aligned CPTAC3 2e979c93-6f7e-4148-8810-515a19caf12b d98e7629ae07404a9e8205c9ce4e9477 {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.WGS.T.hg38 C3N-03180 GBM WGS tumor CPT0206450009 5bee80df-adff-4e5a-bff0-dabf96ae046e_wgs_gdc_realn.bam 121502710116 BAM harmonized CPTAC3 c8fca0a4-a2da-4fea-9088-cea27065329e e07e789c082fe8c038b6f0261d87b952 {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.WXS.N C3N-03180 GBM WXS blood_normal CPT0206500002 CPT0206500002.WholeExome.RP-1303.bam 24836504611 BAM submitted_aligned CPTAC3 5d487cf8-5fc2-40f6-9607-8fe141bb6b8e d33cf69f858fda6392f7f0709764dc33 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03180.WXS.N.hg38 C3N-03180 GBM WXS blood_normal CPT0206500002 edf472d8-84a9-455a-86a1-2b6c5c087389_wxs_gdc_realn.bam 34730472441 BAM harmonized CPTAC3 4d331593-e55a-4ade-b2f3-56330fb2bcf5 e3c3a59e5e253962f1e29464daf08cb6 {"aliquot_tag": "ALQ_eb22b2ee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03180.WXS.T C3N-03180 GBM WXS tumor CPT0206450009 CPT0206450009.WholeExome.RP-1303.bam 23652758191 BAM submitted_aligned CPTAC3 6fd52954-bc14-4652-b33e-2568ea5493e7 205762d2a61cae0b151d136b23d682ed {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03180.WXS.T.hg38 C3N-03180 GBM WXS tumor CPT0206450009 5bee80df-adff-4e5a-bff0-dabf96ae046e_wxs_gdc_realn.bam 32422430650 BAM harmonized CPTAC3 d9068c8d-278e-4587-832d-5bdd01a0c495 e57fdcbf45587f68f2f4b0a4d73aa7fc {"aliquot_tag": "ALQ_7f4c37b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.MethArray.Green.T C3N-03182 GBM Methylation_Array tumor CPT0206560009 203219650047_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 91573271-bea7-463d-94be-a149503cdab0 97052dbe9d2de0e9885c6d329180cf4b {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.MethArray.Red.T C3N-03182 GBM Methylation_Array tumor CPT0206560009 203219650047_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 caa8a7c4-c750-4a9e-a886-891e4ddf4abf f47749faef72c5bf6505d066dedf708c {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.miRNA-Seq.S27_L004_R1.T C3N-03182 GBM miRNA-Seq tumor CPT0206560006 181219_UNC31-K00269_0173_BHYGJJBBXX_CAAAAG_S27_L004_R1_001.unaln.bam 175667733 BAM S27_L004_R1 submitted_unaligned CPTAC3 b0dd487d-f40c-4af4-aa81-72f5c711b72f 6627f236d5d8354c0c11efec15ec251f {"aliquot_tag": "ALQ_630f8357", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.miRNA-Seq.T.hg38 C3N-03182 GBM miRNA-Seq tumor CPT0206560006 dfe44706-7cfd-4717-b360-6264b2dd71e9_mirnaseq_gdc_realn.bam 196370648 BAM harmonized CPTAC3 c913ec73-04a4-4dc9-81d3-b63e67250dfc e891bcee4c8a09f976797ca6da829934 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.RNA-Seq.chimeric.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.chimeric.gdc_realn.bam 125819892 BAM chimeric harmonized CPTAC3 9962c0bf-62b6-4926-a733-c2e790acfc74 5a69760e998e5b17fde74aaac1ad4a71 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.RNA-Seq.genomic.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.genomic.gdc_realn.bam 7988922287 BAM genomic harmonized CPTAC3 5860fc27-8c81-40a4-a8e6-a49ae231b762 d182fe2c241a973eaaa5d5c9b8e68ab0 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.RNA-Seq.S4_L008_R1.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R1_001.fastq.gz 3741947645 FASTQ S4_L008_R1 submitted_unaligned CPTAC3 16b89fae-b4cd-46f4-b073-7f97adf79742 54a76510ea4833768a07e1c6127416d1 {"aliquot_tag": "ALQ_630f8357", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.RNA-Seq.S4_L008_R2.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R2_001.fastq.gz 3772103440 FASTQ S4_L008_R2 submitted_unaligned CPTAC3 aa16efac-5164-4f11-986e-76fbdd660b5e 6dc99ddbb8aa68306fd55ee5ff7b5c1b {"aliquot_tag": "ALQ_630f8357", "sample": "S4", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.RNA-Seq.transcriptome.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.transcriptome.gdc_realn.bam 10636329658 BAM transcriptome harmonized CPTAC3 418666ec-9248-43f7-a804-a290e2a0a6c7 824c5ca7a008f7b73471a7452c989da1 {"aliquot_tag": "ALQ_630f8357", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.WGS.N C3N-03182 GBM WGS blood_normal CPT0206610002 CPT0206610002.WholeGenome.RP-1303.bam 61463466398 BAM submitted_aligned CPTAC3 40083d23-e053-4774-a150-cd1bac2e5983 289c2bce3b83f52f8770cfa206022c17 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03182.WGS.N.hg38 C3N-03182 GBM WGS blood_normal CPT0206610002 169a9157-ea3d-4d12-896d-093c39862823_wgs_gdc_realn.bam 91728345679 BAM harmonized CPTAC3 2ad31616-457b-466a-8225-106e6be6b948 52e6a93631360987edd87e0f125a7924 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03182.WGS.T C3N-03182 GBM WGS tumor CPT0206560009 CPT0206560009.WholeGenome.RP-1303.bam 67489696700 BAM submitted_aligned CPTAC3 5e017c82-5727-4ba4-ab60-b419f70de4fc 6e4c76fd49692d6d5f3ff5ed4cbc3366 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.WGS.T.hg38 C3N-03182 GBM WGS tumor CPT0206560009 dc765b05-ce52-46f4-a45c-200e98c13c17_wgs_gdc_realn.bam 102534668964 BAM harmonized CPTAC3 e0545fba-af1d-47e9-8c38-8fbf516625c0 aa485877f805db54131582f4c43df244 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.WXS.N C3N-03182 GBM WXS blood_normal CPT0206610002 CPT0206610002.WholeExome.RP-1303.bam 27044051742 BAM submitted_aligned CPTAC3 e870346a-01da-4af0-ae28-25cf17862c03 c7d5f366f12214f8e57da29f512895f3 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03182.WXS.N.hg38 C3N-03182 GBM WXS blood_normal CPT0206610002 169a9157-ea3d-4d12-896d-093c39862823_wxs_gdc_realn.bam 38197405326 BAM harmonized CPTAC3 89d3952d-5adf-46e0-80dc-75d403d68222 20ec08d1c5de0797fd4d474c757ee541 {"aliquot_tag": "ALQ_50d6e9f0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03182.WXS.T C3N-03182 GBM WXS tumor CPT0206560009 CPT0206560009.WholeExome.RP-1303.bam 30467398549 BAM submitted_aligned CPTAC3 d1d2e75a-b005-4dc1-b2db-1ff93a07f416 3462c274b6ec44a9fa679857f63c8499 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03182.WXS.T.hg38 C3N-03182 GBM WXS tumor CPT0206560009 dc765b05-ce52-46f4-a45c-200e98c13c17_wxs_gdc_realn.bam 42058229075 BAM harmonized CPTAC3 653c8e55-ebb6-4a9d-bc8c-fdbe450b7a96 c111f490b224abd28cded24dfc708106 {"aliquot_tag": "ALQ_f3b09ec6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.MethArray.Green.T C3N-03183 GBM Methylation_Array tumor CPT0206670007 203219760065_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 47f53fee-506c-4a53-97f1-376e552a8355 f90f032d723eccb24a0a45aac6204046 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.MethArray.Red.T C3N-03183 GBM Methylation_Array tumor CPT0206670007 203219760065_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 d205bf1a-44b1-4d17-961d-e1ceecd7ae76 5046de85a3479ce0e0d0fc8df18177c1 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.miRNA-Seq.S19_L008_R1.T C3N-03183 GBM miRNA-Seq tumor CPT0206670013 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L008_R1_001.unaln.bam 303420689 BAM S19_L008_R1 submitted_unaligned CPTAC3 81023989-aa19-487e-9a6c-959de018d866 65def54ae053bcf2638b79fe49d6afbb {"aliquot_tag": "ALQ_b18a1d87", "sample": "S19", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.miRNA-Seq.T.hg38 C3N-03183 GBM miRNA-Seq tumor CPT0206670013 e9bbd3e8-30df-47d1-9745-d97f68416d1d_mirnaseq_gdc_realn.bam 343984027 BAM harmonized CPTAC3 8d46208b-8901-436d-96d1-395c2d0fe5c9 5e8bfb99562a33251b0d41c025639f72 {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.RNA-Seq.chimeric.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.chimeric.gdc_realn.bam 46886078 BAM chimeric harmonized CPTAC3 a2db7931-93ac-41bf-a547-c39a9e1ca04c 4e3b501c67c8ab988da244f3de4f634b {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.RNA-Seq.genomic.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.genomic.gdc_realn.bam 9112682666 BAM genomic harmonized CPTAC3 7630181b-15d5-4b6d-875e-a063171dd69d be982fec38868bdc1f6f3b67096edbd9 {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.RNA-Seq.S6_L006_R1.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R1_001.fastq.gz 4413991517 FASTQ S6_L006_R1 submitted_unaligned CPTAC3 f18a4ee8-66b3-4796-9788-794458cfee84 e36de1c76723a10a8df57b2d0da6946d {"aliquot_tag": "ALQ_b18a1d87", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.RNA-Seq.S6_L006_R2.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R2_001.fastq.gz 4612215164 FASTQ S6_L006_R2 submitted_unaligned CPTAC3 e28d3399-6017-40b8-848e-83f9a99aceb1 43324c2c01fa2b3bec628d5bbc09212e {"aliquot_tag": "ALQ_b18a1d87", "sample": "S6", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.RNA-Seq.transcriptome.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.transcriptome.gdc_realn.bam 12247439400 BAM transcriptome harmonized CPTAC3 ce3ee5e9-7a8f-4113-995d-8c8af5d892ae 6c9649a442803fdc64254e8bc9392243 {"aliquot_tag": "ALQ_b18a1d87", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.WGS.N C3N-03183 GBM WGS blood_normal CPT0206720002 CPT0206720002.WholeGenome.RP-1303.bam 71629700578 BAM submitted_aligned CPTAC3 024a0a62-fed0-416e-8de9-a6631482c173 1f8dcb400f28e3fc923017a15e3726ca {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03183.WGS.N.hg38 C3N-03183 GBM WGS blood_normal CPT0206720002 294ad51c-8885-4fd9-9437-80f6d8f8c0d8_wgs_gdc_realn.bam 109199626484 BAM harmonized CPTAC3 91e318ce-cf46-4d6e-9e6a-dcf893614ca8 d7b378e5e307126d5ee6e2309b43411e {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03183.WGS.T C3N-03183 GBM WGS tumor CPT0206670007 CPT0206670007.WholeGenome.RP-1303.bam 67819115839 BAM submitted_aligned CPTAC3 325a6ce8-ea6f-46e0-aca8-cab60f92c8d0 94a081231619807b938135c0bae391d9 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.WGS.T.hg38 C3N-03183 GBM WGS tumor CPT0206670007 b977b0e2-6620-4b0b-8be6-0cb5d51e2157_wgs_gdc_realn.bam 103427956427 BAM harmonized CPTAC3 db8375c3-506d-44e6-914b-9bda5fb534c1 5b10d6f4269fee1d7819bab54ba6c496 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.WXS.N C3N-03183 GBM WXS blood_normal CPT0206720002 CPT0206720002.WholeExome.RP-1303.bam 22684384260 BAM submitted_aligned CPTAC3 784da77c-7c30-4cef-8002-fd86961ebb87 0e2c580a6e2ec27602b7c82968ba8ba6 {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03183.WXS.N.hg38 C3N-03183 GBM WXS blood_normal CPT0206720002 294ad51c-8885-4fd9-9437-80f6d8f8c0d8_wxs_gdc_realn.bam 31367740694 BAM harmonized CPTAC3 79d17693-71eb-4b48-85b6-297da56ffbfb 14cde0bc39f7576f2d8467244ec754b9 {"aliquot_tag": "ALQ_dc2a4085", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03183.WXS.T C3N-03183 GBM WXS tumor CPT0206670007 CPT0206670007.WholeExome.RP-1303.bam 23460014114 BAM submitted_aligned CPTAC3 7b2278e3-d21b-4898-9330-e37c0b769466 33d1b59656b1f171304d23c7ac7225de {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03183.WXS.T.hg38 C3N-03183 GBM WXS tumor CPT0206670007 b977b0e2-6620-4b0b-8be6-0cb5d51e2157_wxs_gdc_realn.bam 32498019307 BAM harmonized CPTAC3 ff2e5e88-cab6-43e3-ac26-68e4e63596b9 a4004032b9fbd55890e33ba98f149c33 {"aliquot_tag": "ALQ_affce8df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.MethArray.Green.T C3N-03184 GBM Methylation_Array tumor CPT0206780009 203219650169_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 432487f7-700c-430e-b97a-2808a25556dc 25227a09f59437efa5597cd4ee69fe13 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.MethArray.Red.T C3N-03184 GBM Methylation_Array tumor CPT0206780009 203219650169_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 a65dd5e3-c98b-48b8-bada-f6abd0c1b028 4ffe572b82be340dea9f92bda1382f21 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.miRNA-Seq.S28_L004_R1.T C3N-03184 GBM miRNA-Seq tumor CPT0206780006 181219_UNC31-K00269_0173_BHYGJJBBXX_CAACTA_S28_L004_R1_001.unaln.bam 260920979 BAM S28_L004_R1 submitted_unaligned CPTAC3 8104e91a-f2fa-49d7-88df-9cf463364904 4cff8b52d7d6f10b6677f9e7a6943ee5 {"aliquot_tag": "ALQ_91f79c3d", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.miRNA-Seq.T.hg38 C3N-03184 GBM miRNA-Seq tumor CPT0206780006 573253ad-5a46-4764-bf1a-608401b1b498_mirnaseq_gdc_realn.bam 300169458 BAM harmonized CPTAC3 bf19717c-4904-4359-87c1-283f469eb03f ad5778cd002b0925fca58b56b7160263 {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.RNA-Seq.chimeric.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.chimeric.gdc_realn.bam 291038627 BAM chimeric harmonized CPTAC3 df166173-5790-49c7-99ef-72458498dca8 2bcb7510ec953e551c1c840d0548b7f4 {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.RNA-Seq.genomic.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.genomic.gdc_realn.bam 9048442267 BAM genomic harmonized CPTAC3 06d76886-ad9f-472f-8f8a-b707952ab5f6 561211b320d2d3426d340e75de6e195a {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.RNA-Seq.S3_L001_R1.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4144799085 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 5c5ae7fc-2183-47f7-af45-9c07dc35bae7 19330c2f638500c3ac10d9a304a738b7 {"aliquot_tag": "ALQ_91f79c3d", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.RNA-Seq.S3_L001_R2.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4535735535 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 ae17a1e8-ee58-47dd-987c-ae79b11f38e2 3cbe3f84148ac2902e18719b60225ebb {"aliquot_tag": "ALQ_91f79c3d", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.RNA-Seq.transcriptome.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.transcriptome.gdc_realn.bam 10497646301 BAM transcriptome harmonized CPTAC3 b7566257-b4e4-400f-ab8d-beb68ea1385d 9181e9efaf055f6e83ffdc14d3f50508 {"aliquot_tag": "ALQ_91f79c3d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.scRNA-Seq.S2_L004_R1.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R1_001.fastq.gz 10712601524 FASTQ S2_L004_R1 submitted_unaligned CPTAC3 8f1fa942-150a-4023-b33a-ae9a9ea3ef79 99689b02ff750265f06090c65a96738d {"aliquot_tag": "ALQ_14cacff5", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.scRNA-Seq.S2_L004_R2.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R2_001.fastq.gz 24360054740 FASTQ S2_L004_R2 submitted_unaligned CPTAC3 fe6efe38-2f32-4fef-9ce3-6cd4e9de3744 ba4224ec64bcbcd50ce56ac2871bcff2 {"aliquot_tag": "ALQ_14cacff5", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.scRNA-Seq.T.hg38 C3N-03184 GBM scRNA-Seq tumor CPT0206770002 possorted_genome_bam.bam 27748877601 BAM harmonized CPTAC3 81af3f7d-1e43-47cb-88f9-07fdb39b7cd3 6fc463f522df04b5194fd0fb91c8b836 {"aliquot_tag": "ALQ_14cacff5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.WGS.N C3N-03184 GBM WGS blood_normal CPT0206830002 CPT0206830002.WholeGenome.RP-1303.bam 60404443966 BAM submitted_aligned CPTAC3 6901c856-f491-4b7d-84af-604abea50477 57112c05adb29bb0b38134929f1fe591 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03184.WGS.N.hg38 C3N-03184 GBM WGS blood_normal CPT0206830002 e5a7f2ee-15f8-4c5b-8ea8-c0f57ab8f65d_wgs_gdc_realn.bam 90129244059 BAM harmonized CPTAC3 6555a211-793e-44aa-8a93-5e82c66f40b4 bc146fd46f8af5a813c0cddeeb674f04 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03184.WGS.T C3N-03184 GBM WGS tumor CPT0206780009 CPT0206780009.WholeGenome.RP-1303.bam 58888584690 BAM submitted_aligned CPTAC3 b7a6fccb-02b4-471e-93fb-331c1a859cf4 016a34d8955476cbb8936e821de84493 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.WGS.T.hg38 C3N-03184 GBM WGS tumor CPT0206780009 96da1817-dec2-45c2-9ea7-f654ddebd97a_wgs_gdc_realn.bam 87615735537 BAM harmonized CPTAC3 edb32e91-88ec-41e3-ae0b-1b71c84a3f2e 327f675e4af1cd72626ba1b32d814029 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.WXS.N C3N-03184 GBM WXS blood_normal CPT0206830002 CPT0206830002.WholeExome.RP-1303.bam 25983463240 BAM submitted_aligned CPTAC3 c89e6524-1135-494a-b676-a2f5d2714655 92d4e5aba7d3936c01861c7d3fa19e79 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03184.WXS.N.hg38 C3N-03184 GBM WXS blood_normal CPT0206830002 e5a7f2ee-15f8-4c5b-8ea8-c0f57ab8f65d_wxs_gdc_realn.bam 36048424982 BAM harmonized CPTAC3 41f755ca-0779-44c9-8203-b0444f1a7a82 2092a6b3f3e403ec1f578cc0c572ce99 {"aliquot_tag": "ALQ_101cdbe0", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03184.WXS.T C3N-03184 GBM WXS tumor CPT0206780009 CPT0206780009.WholeExome.RP-1303.bam 23915621839 BAM submitted_aligned CPTAC3 fddc640d-3776-48cd-abcc-c2f69bc07883 31bfd94fb7097d7a1ff9fe5ca66dba45 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03184.WXS.T.hg38 C3N-03184 GBM WXS tumor CPT0206780009 96da1817-dec2-45c2-9ea7-f654ddebd97a_wxs_gdc_realn.bam 32746186220 BAM harmonized CPTAC3 86cf4347-a6c3-49c6-bac4-9cca7e086fac 0730b71defd754beec7464c178e5e4a8 {"aliquot_tag": "ALQ_14881ac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.MethArray.Green.T C3N-03186 GBM Methylation_Array tumor CPT0206880009 203219670217_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a32e471f-1abf-47a1-83e2-abbfa1babab6 adf3f21fab902d79d5dd443a3f075bae {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.MethArray.Red.T C3N-03186 GBM Methylation_Array tumor CPT0206880009 203219670217_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 1dc9e99c-6d18-4df2-af8d-5e2c3f51b098 2bd3fbf97b0133b1b7725441a092ec8b {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.miRNA-Seq.S29_L004_R1.T C3N-03186 GBM miRNA-Seq tumor CPT0206880006 181219_UNC31-K00269_0173_BHYGJJBBXX_CACCGG_S29_L004_R1_001.unaln.bam 259425117 BAM S29_L004_R1 submitted_unaligned CPTAC3 577d0ce4-014e-4129-85ad-5a794eb4bf8c f04b95605c64621b2669b77935f8d74e {"aliquot_tag": "ALQ_60a12ee8", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.miRNA-Seq.T.hg38 C3N-03186 GBM miRNA-Seq tumor CPT0206880006 29864ea3-196b-4701-89d5-7874215d93c3_mirnaseq_gdc_realn.bam 297013313 BAM harmonized CPTAC3 ddf8725a-b232-4d1a-90f7-13916203189b b757637a75fa814a6fbc07f760cd1551 {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.RNA-Seq.chimeric.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.chimeric.gdc_realn.bam 224449155 BAM chimeric harmonized CPTAC3 aed12378-e82a-4e43-be20-4aee2ee534e4 513c2244a9728b19f527f072d26566d6 {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.RNA-Seq.genomic.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.genomic.gdc_realn.bam 8808409337 BAM genomic harmonized CPTAC3 1ea8c9ee-6bcf-4253-b1ee-0e2c9e265b88 26380014d73c0adb44d71fa2232b976c {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.RNA-Seq.S2_L001_R1.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3759023432 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 87bab1d0-10a6-491d-8199-c5edd2946f2b 5f194eec615c5ca976d3a64bd0106c35 {"aliquot_tag": "ALQ_60a12ee8", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.RNA-Seq.S2_L001_R2.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4161674954 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 9d47e501-79d8-4891-9c5c-8fb876837447 7f03c4090cfd22a7bee82458fecd6c4c {"aliquot_tag": "ALQ_60a12ee8", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.RNA-Seq.transcriptome.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.transcriptome.gdc_realn.bam 10416378361 BAM transcriptome harmonized CPTAC3 a4de6238-89a7-4daa-bb0c-179f2d64ab53 f7c85c4bf1506fca693386a96281fe92 {"aliquot_tag": "ALQ_60a12ee8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.scRNA-Seq.S4_L001_R1.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R1_001.fastq.gz 10703766166 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 9df1cb87-32b3-4477-982b-9af04c3f4ccd 047d7739b6a6ebeface55d18c487b02a {"aliquot_tag": "ALQ_8eaf4fc4", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.scRNA-Seq.S4_L001_R2.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R2_001.fastq.gz 24638505648 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 25dd41d3-2be1-46c4-9630-443e70d3fbd3 fd3d03b1ea01950154acb863c658a6d4 {"aliquot_tag": "ALQ_8eaf4fc4", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.scRNA-Seq.T.hg38 C3N-03186 GBM scRNA-Seq tumor CPT0206880004 possorted_genome_bam.bam 24794207809 BAM harmonized CPTAC3 cb7f2b9f-026c-474c-8597-d255f446da18 a8d615564506880e1594a12ed51befc1 {"aliquot_tag": "ALQ_8eaf4fc4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.WGS.N C3N-03186 GBM WGS blood_normal CPT0206940002 CPT0206940002.WholeGenome.RP-1303.bam 65040645125 BAM submitted_aligned CPTAC3 9f5d33fa-acdf-44fe-b14f-ece6991eb1bf 155895ce934cf3f649541e1a26eba8d7 {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03186.WGS.N.hg38 C3N-03186 GBM WGS blood_normal CPT0206940002 6e67dba7-0c71-4c45-9d0b-d93b5a185421_wgs_gdc_realn.bam 97634516512 BAM harmonized CPTAC3 b30947ce-f48f-4950-a79b-c14d5b5f8260 528850f8287a1fb0c30349d3bc5ef967 {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03186.WGS.T C3N-03186 GBM WGS tumor CPT0206880009 CPT0206880009.WholeGenome.RP-1303.bam 77551110154 BAM submitted_aligned CPTAC3 16fc5973-a920-4c24-ba52-bf1003b15320 0162d841a527b869868fa690015b111d {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.WGS.T.hg38 C3N-03186 GBM WGS tumor CPT0206880009 c30dd2c3-895f-44a7-aa8c-6013bae94327_wgs_gdc_realn.bam 116275102027 BAM harmonized CPTAC3 4656a5ac-0538-41d3-b81e-dd7cc4afa2c7 3a7f68d5c5622ee9879eb2a95145219b {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.WXS.N C3N-03186 GBM WXS blood_normal CPT0206940002 CPT0206940002.WholeExome.RP-1303.bam 25823559443 BAM submitted_aligned CPTAC3 047fcc60-52dc-44c5-a807-3cbfe0243806 e8c450ecac4060f26abb942b3de84156 {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03186.WXS.N.hg38 C3N-03186 GBM WXS blood_normal CPT0206940002 6e67dba7-0c71-4c45-9d0b-d93b5a185421_wxs_gdc_realn.bam 36421780476 BAM harmonized CPTAC3 da4581cd-acbb-43dc-a30a-9d32e3fd5a84 70d6ba3c7d80891f39a1e0031d1c800d {"aliquot_tag": "ALQ_6960d455", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03186.WXS.T C3N-03186 GBM WXS tumor CPT0206880009 CPT0206880009.WholeExome.RP-1303.bam 31278848454 BAM submitted_aligned CPTAC3 ebb1c679-a3ad-476f-984b-f00e83fd745c 7eb5a8a6844890e86cf232e315676415 {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03186.WXS.T.hg38 C3N-03186 GBM WXS tumor CPT0206880009 c30dd2c3-895f-44a7-aa8c-6013bae94327_wxs_gdc_realn.bam 43217347320 BAM harmonized CPTAC3 5072d90a-cdd8-4968-9d27-071d91846d9a 1df9ffd941877f3eb7983824aff663f0 {"aliquot_tag": "ALQ_f01e3379", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.MethArray.Green.T C3N-03188 GBM Methylation_Array tumor CPT0207030009 203219650042_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 088e4c23-06cc-464a-9151-29ecfe7a693a 9c58cc020294b8a8d53c73ced60a86e8 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.MethArray.Red.T C3N-03188 GBM Methylation_Array tumor CPT0207030009 203219650042_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 9a3c6d18-3143-4faf-83c2-9202b8f9700f e8e8003d71a75e0633810cc336652575 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.miRNA-Seq.S16_L008_R1.T C3N-03188 GBM miRNA-Seq tumor CPT0207030013 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L008_R1_001.unaln.bam 251151360 BAM S16_L008_R1 submitted_unaligned CPTAC3 d37842f6-bd70-4a7a-b673-e64fa1f236d9 2d071b7dcbfe9f5b390386c354176813 {"aliquot_tag": "ALQ_342453ee", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.miRNA-Seq.T.hg38 C3N-03188 GBM miRNA-Seq tumor CPT0207030013 797da332-0a38-4ba6-80be-e5abce2060e7_mirnaseq_gdc_realn.bam 282463571 BAM harmonized CPTAC3 2a3d62cf-320b-43d6-ac42-8a52f9e62786 886f0f764ed74fe6f5ca03748c361b14 {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.RNA-Seq.chimeric.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.chimeric.gdc_realn.bam 41839644 BAM chimeric harmonized CPTAC3 62bb2cc9-2a28-4b7d-b94f-73c162f176e9 e2aed35c686814198739f6f54b0e6c27 {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.RNA-Seq.genomic.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.genomic.gdc_realn.bam 8040292847 BAM genomic harmonized CPTAC3 dd2295a7-1762-4ec2-a84c-5ad4653f64aa 1c52eba9955332dfd8317dec28c818aa {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.RNA-Seq.S1_L005_R1.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R1_001.fastq.gz 3834393988 FASTQ S1_L005_R1 submitted_unaligned CPTAC3 76ca9742-918c-4db7-ac65-e842a937121e 58246b1060892a74edbe26414d1c3db0 {"aliquot_tag": "ALQ_342453ee", "sample": "S1", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.RNA-Seq.S1_L005_R2.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R2_001.fastq.gz 3998796827 FASTQ S1_L005_R2 submitted_unaligned CPTAC3 00da971e-c069-4aaf-a9b5-80a313d7b0bf 927cd31201275b9bc1050ebeed63e981 {"aliquot_tag": "ALQ_342453ee", "sample": "S1", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.RNA-Seq.transcriptome.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.transcriptome.gdc_realn.bam 10378849587 BAM transcriptome harmonized CPTAC3 f2470f17-e00c-4376-adfc-9b2a59d8ef08 5f98711717fed3307f1f8efabef54d57 {"aliquot_tag": "ALQ_342453ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.scRNA-Seq.S4_L003_R1.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R1_001.fastq.gz 13652430515 FASTQ S4_L003_R1 submitted_unaligned CPTAC3 50bf9d3e-e44e-43e2-ac84-82d515902fff d8907a5af8b8102c9c7d7c663f4c3d2d {"aliquot_tag": "ALQ_a3f68a66", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.scRNA-Seq.S4_L003_R2.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R2_001.fastq.gz 33711334298 FASTQ S4_L003_R2 submitted_unaligned CPTAC3 4839997b-24aa-4d29-939a-7bf9c2cb44c6 ac48fd16a0effaab4ea46ad0fc5e0020 {"aliquot_tag": "ALQ_a3f68a66", "sample": "S4", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.scRNA-Seq.T.hg38 C3N-03188 GBM scRNA-Seq tumor CPT0207030018 possorted_genome_bam.bam 40023051443 BAM harmonized CPTAC3 a06d7756-5df6-475c-89bd-bd1dd1555104 c23494e630462c2d3fd9e74451e4b181 {"aliquot_tag": "ALQ_a3f68a66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.WGS.N C3N-03188 GBM WGS blood_normal CPT0207080002 CPT0207080002.WholeGenome.RP-1303.bam 53507871721 BAM submitted_aligned CPTAC3 cf3b8ee2-a68e-4b14-a0ef-5a49db68a16d 501732d96e90137806e96abd2132ee91 {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03188.WGS.N.hg38 C3N-03188 GBM WGS blood_normal CPT0207080002 d018b972-f90c-490c-a9f4-da37c18224e0_wgs_gdc_realn.bam 79411908145 BAM harmonized CPTAC3 b735008d-191e-43a9-9185-e6385b53018c cdc78e6518e4c7403b05d8954beb71c2 {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03188.WGS.T C3N-03188 GBM WGS tumor CPT0207030009 CPT0207030009.WholeGenome.RP-1303.bam 59348737026 BAM submitted_aligned CPTAC3 b7639cf2-56e0-49c7-af72-b4aa1b59f60f 5712d3bc068fbf6b6a2b749ddfb99cc4 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.WGS.T.hg38 C3N-03188 GBM WGS tumor CPT0207030009 42276cec-9568-41dc-9ec2-5776cc3d9c55_wgs_gdc_realn.bam 90197216170 BAM harmonized CPTAC3 f2dec90b-70b4-4b53-bf41-503a0989c0d4 80054705aabf6cab32d253c646e949fe {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.WXS.N C3N-03188 GBM WXS blood_normal CPT0207080002 CPT0207080002.WholeExome.RP-1303.bam 23165313560 BAM submitted_aligned CPTAC3 86ac4b9b-b8da-4c2a-aa1c-a74d3dfbd47d 62827fdc14085df2d38c812ab05c8542 {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03188.WXS.N.hg38 C3N-03188 GBM WXS blood_normal CPT0207080002 d018b972-f90c-490c-a9f4-da37c18224e0_wxs_gdc_realn.bam 31928104280 BAM harmonized CPTAC3 cefaa0cb-ac0a-4738-a03f-512ffdee5526 9616bd857ab4edb777a418b78161fa7b {"aliquot_tag": "ALQ_2de86328", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03188.WXS.T C3N-03188 GBM WXS tumor CPT0207030009 CPT0207030009.WholeExome.RP-1303.bam 25793588577 BAM submitted_aligned CPTAC3 46bebe5b-432e-4597-a895-9180a55fe14a dcdbd555ad2723f682ca2aaa7c0fe0cd {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03188.WXS.T.hg38 C3N-03188 GBM WXS tumor CPT0207030009 42276cec-9568-41dc-9ec2-5776cc3d9c55_wxs_gdc_realn.bam 35750459782 BAM harmonized CPTAC3 5b316a81-0ebb-4d67-99e9-4a04c5b8d255 487e590c1d6a586d24283cb8cbc4c393 {"aliquot_tag": "ALQ_cdea8bb1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.MethArray.Green.T C3N-03190 PDA Methylation_Array tumor CPT0236560007 203561620012_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 25e9f8ad-12bb-4423-9598-873703a088ae f870ac1ef3d6d686739ebfc846147e00 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.MethArray.Red.T C3N-03190 PDA Methylation_Array tumor CPT0236560007 203561620012_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 c64a0849-a91d-4ec0-bfb4-849a449fa966 172b48f2538486dbfaec18ac7ce7e870 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.miRNA-Seq.S23_L004_R1.T C3N-03190 PDA miRNA-Seq tumor CPT0236560010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L004_R1_001.unaln.bam 192681943 BAM S23_L004_R1 submitted_unaligned CPTAC3 8b60b59b-8718-4e7f-9834-3ced073cc7b1 9ed5f9e83f5e71917b47410250e1a633 {"aliquot_tag": "ALQ_1df810c0", "sample": "S23", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.miRNA-Seq.T.hg38 C3N-03190 PDA miRNA-Seq tumor CPT0236560010 1dc57242-3126-4af2-90e6-b033762c408a_mirnaseq_gdc_realn.bam 218002181 BAM harmonized CPTAC3 204b0607-bff2-413d-8541-02f7e55fbbff 678884d54befc32cfb34792fcb50f298 {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.RNA-Seq.chimeric.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.chimeric.gdc_realn.bam 35137200 BAM chimeric harmonized CPTAC3 33a84489-ac22-4cc6-832b-c47b885117f5 d33bdba46cbb23733fad5f59919e381d {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.RNA-Seq.genomic.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.genomic.gdc_realn.bam 10162809253 BAM genomic harmonized CPTAC3 5e5297f4-6137-496b-b183-9ca7e9da1b72 b12b27d03bb3598c6bf60a1cdfcea25f {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.RNA-Seq.S4_L001_R1.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4889574051 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 054f03c6-579f-4f81-9e49-70c7e4267788 05572edb298a0d35ca031bb0425860ca {"aliquot_tag": "ALQ_1df810c0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.RNA-Seq.S4_L001_R2.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 5017397148 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 51bf57de-5b73-41a0-8d32-ff476c13a1e8 3c98cb32f7e9341f01f93709989e179f {"aliquot_tag": "ALQ_1df810c0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.RNA-Seq.transcriptome.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.transcriptome.gdc_realn.bam 13485932532 BAM transcriptome harmonized CPTAC3 4d07db7f-301a-4794-a2cc-1eaa04ca9bf1 69fb35bb64b8294420a98435f491e144 {"aliquot_tag": "ALQ_1df810c0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.WGS.N C3N-03190 PDA WGS blood_normal CPT0236610002 CPT0236610002.WholeGenome.RP-1303.bam 73518655440 BAM submitted_aligned CPTAC3 31e0d81f-ad9b-410a-9b57-f98fc5955593 92070da07777c0d93381e2af332f50ca {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03190.WGS.N.hg38 C3N-03190 PDA WGS blood_normal CPT0236610002 15ca8061-9d8f-47c8-aa4f-a5ecc3445d8d_wgs_gdc_realn.bam 108902893542 BAM harmonized CPTAC3 bdb9597c-08fe-4092-a1cc-228a8327d750 32910341e543e49a0188f99414771cd2 {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03190.WGS.T C3N-03190 PDA WGS tumor CPT0236560007 CPT0236560007.WholeGenome.RP-1303.bam 127825661300 BAM submitted_aligned CPTAC3 b159fafe-2cd9-4c1b-9b1c-c97f6f441d15 2349f1d32fdb0c29e305fa5ea2e28c9c {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.WGS.T.hg38 C3N-03190 PDA WGS tumor CPT0236560007 de5a663d-b85c-428b-8a08-ec9094d232af_wgs_gdc_realn.bam 186230169290 BAM harmonized CPTAC3 22c52e68-339b-49da-b516-746fa3a9f233 fde3a1da2da951605ca3ada38cd98cee {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.WXS.N C3N-03190 PDA WXS blood_normal CPT0236610002 CPT0236610002.WholeExome.RP-1303.bam 26378565034 BAM submitted_aligned CPTAC3 b9a17d7b-00de-473d-9515-cb68881dad26 2be8408b149dcee8a4738865287d9bd7 {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03190.WXS.N.hg38 C3N-03190 PDA WXS blood_normal CPT0236610002 15ca8061-9d8f-47c8-aa4f-a5ecc3445d8d_wxs_gdc_realn.bam 37056856066 BAM harmonized CPTAC3 7d1eb416-c93e-4044-b738-264127182e8a 63f034890777538f519824095d74cf4b {"aliquot_tag": "ALQ_de59ee13", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03190.WXS.T C3N-03190 PDA WXS tumor CPT0236560007 CPT0236560007.WholeExome.RP-1303.bam 65656179536 BAM submitted_aligned CPTAC3 bc3b8121-71aa-4897-ae82-8698ed233189 6525fc050f3e5ffde45467b85db545d3 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03190.WXS.T.hg38 C3N-03190 PDA WXS tumor CPT0236560007 de5a663d-b85c-428b-8a08-ec9094d232af_wxs_gdc_realn.bam 90491213154 BAM harmonized CPTAC3 86672121-35c2-45d7-977b-8f84c1eaaca3 db9fc4680c98c363dddbfa05b30fca37 {"aliquot_tag": "ALQ_9a87b422", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.MethArray.Green.A C3N-03202 LUAD Methylation_Array tissue_normal CPT0185040006 203561620040_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e7ed76c4-64a3-4bee-9b07-30834d167dcf 5dc846007e160062449ed5d3ac09b646 {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.MethArray.Green.T C3N-03202 LUAD Methylation_Array tumor CPT0185020007 203561620064_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 54ff8e1e-dff6-484b-b1c7-f7b56e176b47 d4b98096f22e749b4ac547d7eeca476c {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.MethArray.Red.A C3N-03202 LUAD Methylation_Array tissue_normal CPT0185040006 203561620040_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 7ffb5561-e84a-40ca-aac5-db68a3e9bec9 401e2802e90e5603c29c164e005623df {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.MethArray.Red.T C3N-03202 LUAD Methylation_Array tumor CPT0185020007 203561620064_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 3e5dc323-0f5b-461a-a3fe-ecb14439be43 ac488dbeacc9c19e9c20aa7a993fad12 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.miRNA-Seq.A.hg38 C3N-03202 LUAD miRNA-Seq tissue_normal CPT0185040009 f25a7def-3c10-4b65-a212-597cd605c8a6_mirnaseq_gdc_realn.bam 255080938 BAM harmonized CPTAC3 2fea1e9a-cae8-485c-8395-9041dc2c4eac d1a83069420945640c902b4e0759f5e5 {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.miRNA-Seq.S19_L005_R1.T C3N-03202 LUAD miRNA-Seq tumor CPT0185020010 190722_UNC31-K00269_0234_AH7VGTBBXY_GAGTGG_S19_L005_R1_001.unaln.bam 208177575 BAM S19_L005_R1 submitted_unaligned CPTAC3 2cb58137-5477-447b-beb5-0fa64f9c8419 f776d9fc230ed363b9368e8cf77d1bb9 {"aliquot_tag": "ALQ_edba1dbd", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.miRNA-Seq.S34_L007_R1.A C3N-03202 LUAD miRNA-Seq tissue_normal CPT0185040009 190712_UNC32-K00270_0192_BH7HL3BBXY_GGCTAC_S34_L007_R1_001.unaln.bam 220937051 BAM S34_L007_R1 submitted_unaligned CPTAC3 bac43242-fe0d-4258-876b-4ccdc00b735f 23efd8173ed453ae82bb1e25423dc4ff {"aliquot_tag": "ALQ_23d61f8", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.miRNA-Seq.T.hg38 C3N-03202 LUAD miRNA-Seq tumor CPT0185020010 edca62a0-2796-4074-8b48-9bc3d6111ea1_mirnaseq_gdc_realn.bam 229492060 BAM harmonized CPTAC3 f860b83a-9a53-4e10-bb71-84bf9c3c65e1 0ff37ba93be176005dea730a022cc810 {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.RNA-Seq.chimeric.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.chimeric.gdc_realn.bam 75659643 BAM chimeric harmonized CPTAC3 4ff44f72-ed7c-4885-a5d7-b506a223c83e 023c70d5189e954da5b5183632e54617 {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.RNA-Seq.chimeric.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.chimeric.gdc_realn.bam 38553401 BAM chimeric harmonized CPTAC3 c9a4b841-bb60-4b55-b308-a0c489cde981 a44f5e04001379dacabc295dc5b9097d {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.RNA-Seq.genomic.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.genomic.gdc_realn.bam 8923127837 BAM genomic harmonized CPTAC3 4c265305-e3cd-4aea-ad3b-24e6b5741177 2e9cde01d05ba5247c2a16abf5184fd2 {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.RNA-Seq.genomic.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.genomic.gdc_realn.bam 15594861101 BAM genomic harmonized CPTAC3 3a4157b8-b1f4-4e57-a99a-35c7277385d3 ebd118acbc6e3711b3b0dc5d3c474a6a {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.RNA-Seq.S1_L001_R1.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R1_001.fastq.gz 4587829806 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 183e8bbe-746b-42e7-934a-8a397997e1e4 2738262dc07c7d3c5b6a38f674490c73 {"aliquot_tag": "ALQ_edba1dbd", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.RNA-Seq.S1_L001_R2.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R2_001.fastq.gz 5216133093 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 7f22ed33-7dcb-4014-ab1a-c41bf68dd1f1 fef6ce9c4c97e379a8e806690a7e6cba {"aliquot_tag": "ALQ_edba1dbd", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.RNA-Seq.S8_L002_R1.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R1_001.fastq.gz 3506657711 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 8bee3267-ddf6-4203-8344-ff0ba4dfda0a e2c45123e268cfee8d5233f6bd8cc443 {"aliquot_tag": "ALQ_23d61f8", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.RNA-Seq.S8_L002_R2.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R2_001.fastq.gz 3902942117 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 f21461d0-82d6-4fc5-a031-c50cdbbc3a85 3804364a72afef04883795e92c9cb03e {"aliquot_tag": "ALQ_23d61f8", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.RNA-Seq.transcriptome.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.transcriptome.gdc_realn.bam 9148436707 BAM transcriptome harmonized CPTAC3 950fcae8-da88-411d-bdc7-d0c673e4dda8 3d306ee7bd6d1bfda466eaa61993963d {"aliquot_tag": "ALQ_23d61f8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.RNA-Seq.transcriptome.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.transcriptome.gdc_realn.bam 10679579404 BAM transcriptome harmonized CPTAC3 55e2cfd1-b339-4759-b20e-f9fad65f6d67 e41f0e16d1cf7afbac842b853cbf1e1d {"aliquot_tag": "ALQ_edba1dbd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.WGS.N C3N-03202 LUAD WGS blood_normal CPT0185080002 CPT0185080002.WholeGenome.RP-1303.bam 78760049301 BAM submitted_aligned CPTAC3 971be281-e3d7-4a18-9d05-a3fa370da414 b0afc8c30a9d1bcc4780cfc24d155571 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03202.WGS.N.hg38 C3N-03202 LUAD WGS blood_normal CPT0185080002 fab521c6-60cf-4a16-b32f-d066d19c3bc1_wgs_gdc_realn.bam 116730769917 BAM harmonized CPTAC3 0542bf96-1726-465e-9fcb-a5ca090e2832 7bd0b8983b4299fed08e6d11af25e243 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03202.WGS.T C3N-03202 LUAD WGS tumor CPT0185020007 CPT0185020007.WholeGenome.RP-1303.bam 63428256020 BAM submitted_aligned CPTAC3 a962abbc-6301-411c-a919-68330df04bf8 f3ff3d56887e7f2801719de34d3566a5 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.WGS.T.hg38 C3N-03202 LUAD WGS tumor CPT0185020007 af32a993-92b4-4a50-87fb-b2f022d1ce71_wgs_gdc_realn.bam 93606358597 BAM harmonized CPTAC3 5a0aeb4f-7973-481f-9199-9dc63417f1e7 b49f4286248774a4cefc5a2d346cf22c {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.WXS.A C3N-03202 LUAD WXS tissue_normal CPT0185040006 CPT0185040006.WholeExome.RP-1303.bam 20436815252 BAM submitted_aligned CPTAC3 b4cd2da4-9983-4584-999e-25f3a6607364 d302defd23cd25e2b341dd7db4699b98 {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.WXS.A.hg38 C3N-03202 LUAD WXS tissue_normal CPT0185040006 183cb04c-ba51-406a-b338-aa9d138205d3_wxs_gdc_realn.bam 28503567924 BAM harmonized CPTAC3 b8c9f3e1-0dc4-4f80-9130-22051c54207b 1d17758b066383a640d4bf5084a67691 {"aliquot_tag": "ALQ_92827c69", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03202.WXS.N C3N-03202 LUAD WXS blood_normal CPT0185080002 CPT0185080002.WholeExome.RP-1303.bam 27720118002 BAM submitted_aligned CPTAC3 404d5452-68de-42a3-9762-0342d37ecb04 7cbe4e03c65dbb8f2c085a20c6d07530 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03202.WXS.N.hg38 C3N-03202 LUAD WXS blood_normal CPT0185080002 fab521c6-60cf-4a16-b32f-d066d19c3bc1_wxs_gdc_realn.bam 37865196915 BAM harmonized CPTAC3 40e83d14-2ffa-4ed2-b414-7fb8bece4a31 2820ae04567dab3cb5117810ffe34e34 {"aliquot_tag": "ALQ_501f5571", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03202.WXS.T C3N-03202 LUAD WXS tumor CPT0185020007 CPT0185020007.WholeExome.RP-1303.bam 26791260917 BAM submitted_aligned CPTAC3 7612f9cd-1dec-4ad3-8a5d-9bd75d612b7b bb1852e70c03b9564d364c0430471f09 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03202.WXS.T.hg38 C3N-03202 LUAD WXS tumor CPT0185020007 af32a993-92b4-4a50-87fb-b2f022d1ce71_wxs_gdc_realn.bam 36842196652 BAM harmonized CPTAC3 f4a913d7-f17c-4147-9267-007ac663f1d4 bec1ff4ac36370278c816ff300893d54 {"aliquot_tag": "ALQ_6ac5b95f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.MethArray.Green.A C3N-03204 LSCC Methylation_Array tissue_normal CPT0209510006 203219760081_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 61334843-a93b-445b-ba63-4b3bceb22679 bf93fc5da2f59e6bbc145c1483275ecb {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.MethArray.Green.T C3N-03204 LSCC Methylation_Array tumor CPT0209490006 203219670118_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 96a38960-ba50-4cb8-8c19-5befd85f1656 362d1bbff89d988b333cda41f0c8a3d0 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.MethArray.Red.A C3N-03204 LSCC Methylation_Array tissue_normal CPT0209510006 203219760081_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 3248947f-51e9-4cd3-9158-2070afe64b22 87d88d445e45939f1aedc48c7b69acff {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.MethArray.Red.T C3N-03204 LSCC Methylation_Array tumor CPT0209490006 203219670118_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5ac724e-a959-418a-9eb9-c8c23c2b268e e625d486e7b33ec847623a6bd6542460 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.miRNA-Seq.A.hg38 C3N-03204 LSCC miRNA-Seq tissue_normal CPT0209510009 85cf518d-b3c9-4dfd-acf0-836f4ef82d79_mirnaseq_gdc_realn.bam 239259991 BAM harmonized CPTAC3 20dec18f-e547-46fb-a278-8ef763fb6e53 657a58248b6a7e1e08381b9d4ef90230 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.miRNA-Seq.S42_L004_R1.A C3N-03204 LSCC miRNA-Seq tissue_normal CPT0209510009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAGATC_S42_L004_R1_001.unaln.bam 217031766 BAM S42_L004_R1 submitted_unaligned CPTAC3 132a6c3a-2488-4c16-9fec-a8a319634289 60fa3594de03bca6deca31400339ca0b {"aliquot_tag": "ALQ_b7d8323f", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.miRNA-Seq.S47_L002_R1.T C3N-03204 LSCC miRNA-Seq tumor CPT0209490009 190206_UNC31-K00269_0191_AH2WY5BBXY_CGATGT_S47_L002_R1_001.unaln.bam 236418054 BAM S47_L002_R1 submitted_unaligned CPTAC3 a0710ef8-184d-4008-b3e4-56d1ac1917db d0e6c6778aaf625aea0b3b35afeef7c6 {"aliquot_tag": "ALQ_4cf4aa5b", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.miRNA-Seq.T.hg38 C3N-03204 LSCC miRNA-Seq tumor CPT0209490009 7cf0816e-0f9f-434a-8557-53c90b7670bd_mirnaseq_gdc_realn.bam 256304041 BAM harmonized CPTAC3 4cbf5823-71ab-4568-8fb4-921c98234ac8 9e2ea7a4cab0530d1464a4dc87d73c80 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.RNA-Seq.chimeric.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.chimeric.gdc_realn.bam 191125691 BAM chimeric harmonized CPTAC3 f4c89f5c-84be-4847-8d9a-4d9bc8475110 1e6a59c786b99ebb0f8aacc471ca5cf0 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.RNA-Seq.chimeric.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.chimeric.gdc_realn.bam 64096427 BAM chimeric harmonized CPTAC3 d4044162-d935-40ef-a81d-c36f613ea66d eff38a18ac065e8d850de96e425513c3 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.RNA-Seq.genomic.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.genomic.gdc_realn.bam 8032314548 BAM genomic harmonized CPTAC3 8e9addd8-5ac5-4599-95d9-b0ee628f0d31 a4cc19c2803cf3cc414928f9903277d6 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.RNA-Seq.genomic.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.genomic.gdc_realn.bam 8423202625 BAM genomic harmonized CPTAC3 fdf48999-96dd-48b6-89dc-3a43afe4a61b 2d974462333f21925eb3dab80552e736 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.RNA-Seq.S11_L003_R1.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3938256386 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 d5277c63-b4be-4f9b-87ea-9ac078f04936 e7fc94b9afc6a2d9afd559e95320acc0 {"aliquot_tag": "ALQ_4cf4aa5b", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.RNA-Seq.S11_L003_R2.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4253842043 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 f295e7c3-82a0-4938-ada6-1aebcee8ab85 c2e9b7c5f6f74b1a722c4d1ac35d93df {"aliquot_tag": "ALQ_4cf4aa5b", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.RNA-Seq.S8_L008_R1.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3748428248 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 83661a30-ad05-431c-af51-b787c34110c3 4be282a577ad28cdf79b93b49df87637 {"aliquot_tag": "ALQ_b7d8323f", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.RNA-Seq.S8_L008_R2.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4250342811 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 f103cbba-4c2f-43f7-8712-a7b3552039f0 80c957df01a09345f7663231242ac7ec {"aliquot_tag": "ALQ_b7d8323f", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.RNA-Seq.transcriptome.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.transcriptome.gdc_realn.bam 9993155660 BAM transcriptome harmonized CPTAC3 42355b3b-9335-4760-a55e-8beae58ea145 4ae1842babd63ac351b863561bbc5720 {"aliquot_tag": "ALQ_b7d8323f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.RNA-Seq.transcriptome.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.transcriptome.gdc_realn.bam 12215688496 BAM transcriptome harmonized CPTAC3 31f33ed3-490e-4402-95be-bbdae7e33d27 6c23ebc127a8ab4f0010e0ede36c40e3 {"aliquot_tag": "ALQ_4cf4aa5b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.WGS.N C3N-03204 LSCC WGS blood_normal CPT0209550002 CPT0209550002.WholeGenome.RP-1303.bam 57086367827 BAM submitted_aligned CPTAC3 4b39c604-73cb-44f6-80cd-ecd8d0501001 3b9b9d19eb56abce5844796b9d643e4e {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03204.WGS.N.hg38 C3N-03204 LSCC WGS blood_normal CPT0209550002 0ea1f237-cdc6-4d6c-a4a1-15caadce1ebc_wgs_gdc_realn.bam 82872893991 BAM harmonized CPTAC3 c8f12894-0bb9-41a9-a7a6-55661f980c0f 0611f7e03015f3b4981164125699e856 {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03204.WGS.T C3N-03204 LSCC WGS tumor CPT0209490006 CPT0209490006.WholeGenome.RP-1303.bam 120316956613 BAM submitted_aligned CPTAC3 31b7f24d-2630-40ac-ac09-110682c29291 54646e359a61197ed57e2b8739d7f2e5 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.WGS.T.hg38 C3N-03204 LSCC WGS tumor CPT0209490006 eb7cddfe-2246-4542-8756-06d1b3f872d6_wgs_gdc_realn.bam 174943381681 BAM harmonized CPTAC3 0d044a36-d468-4cf1-a198-790afa364cc7 302e9247eb5d505cd54ec448f435a19a {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.WXS.A C3N-03204 LSCC WXS tissue_normal CPT0209510006 CPT0209510006.WholeExome.RP-1303.bam 24716426083 BAM submitted_aligned CPTAC3 7ee27d2a-71b5-4513-b44d-b02703c9b4a3 1cf440dcfbe5b82a110db543a0628463 {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.WXS.A.hg38 C3N-03204 LSCC WXS tissue_normal CPT0209510006 5b8df5f2-b6db-45e3-beee-94782533f59e_wxs_gdc_realn.bam 33943140423 BAM harmonized CPTAC3 228a1c4f-43c0-4917-a17e-459809f6882c 9a05ea8bdc834f864d53c588e349d200 {"aliquot_tag": "ALQ_27672fae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03204.WXS.N C3N-03204 LSCC WXS blood_normal CPT0209550002 CPT0209550002.WholeExome.RP-1303.bam 27538436377 BAM submitted_aligned CPTAC3 32d07935-5278-438d-b136-d14da1beb89b d8496ba9f5b262317d030fe23110c3ee {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03204.WXS.N.hg38 C3N-03204 LSCC WXS blood_normal CPT0209550002 0ea1f237-cdc6-4d6c-a4a1-15caadce1ebc_wxs_gdc_realn.bam 37582249744 BAM harmonized CPTAC3 5c27e5f1-f18c-46f2-9e75-6b8000d93a64 d65cf9ecece65f4b678a4d433c8c534e {"aliquot_tag": "ALQ_d58a4d77", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03204.WXS.T C3N-03204 LSCC WXS tumor CPT0209490006 CPT0209490006.WholeExome.RP-1303.bam 26555549522 BAM submitted_aligned CPTAC3 3aafeec3-540e-40fe-affc-7ab9ba00111f 68ebd152be2862e0f5ee2acac9c23d17 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03204.WXS.T.hg38 C3N-03204 LSCC WXS tumor CPT0209490006 eb7cddfe-2246-4542-8756-06d1b3f872d6_wxs_gdc_realn.bam 37415167175 BAM harmonized CPTAC3 a885a5c9-fa4d-4b2e-9dd9-a4316afc8e7f a18ed97249371830447a274e71352a74 {"aliquot_tag": "ALQ_dc4bb7ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.MethArray.Green.A C3N-03205 LUAD Methylation_Array tissue_normal CPT0185110006 203219670180_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 e263981a-c523-4d0c-aef7-eae77f7b6841 5f0ee98335e1a686f20750817993756b {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.MethArray.Green.T C3N-03205 LUAD Methylation_Array tumor CPT0185090006 203220070082_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 67cfcc1d-50af-45d6-988f-987f7cec2559 ae66d2fc8e781981d6f249d473b23ea5 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.MethArray.Red.A C3N-03205 LUAD Methylation_Array tissue_normal CPT0185110006 203219670180_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 be354aa8-ba91-4a8b-bb96-8a8d2a159004 11278483e797c1bc3a3b48de8513d048 {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.MethArray.Red.T C3N-03205 LUAD Methylation_Array tumor CPT0185090006 203220070082_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 6afcb3c8-6665-48ff-8ba6-4ea1306d7449 b69bf41cadabe57c5790130bfbaf6322 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.miRNA-Seq.A.hg38 C3N-03205 LUAD miRNA-Seq tissue_normal CPT0185110009 5d3be101-31c2-4409-b087-afec8fb3951b_mirnaseq_gdc_realn.bam 363524209 BAM harmonized CPTAC3 e90d8440-0d81-4dad-83dd-6f63c66dc7ea 1c33fd2e1fbae632988e233fd15bad29 {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.miRNA-Seq.S46_L007_R1.T C3N-03205 LUAD miRNA-Seq tumor CPT0185090009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L007_R1_001.unaln.bam 276816917 BAM S46_L007_R1 submitted_unaligned CPTAC3 e0e97964-6c85-4166-b231-982b96281da4 7f66489c8a08a9c7ebd0f2413d6e9f97 {"aliquot_tag": "ALQ_faada549", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.miRNA-Seq.S7_L006_R1.A C3N-03205 LUAD miRNA-Seq tissue_normal CPT0185110009 190130_UNC31-K00269_0188_BH2FGCBBXY_GCCAAT_S7_L006_R1_001.unaln.bam 328204437 BAM S7_L006_R1 submitted_unaligned CPTAC3 a058e3da-cee8-4a7f-9c8b-d60bd01e0a1d 72bc9d71edab9e9dbaa528d80242fbe1 {"aliquot_tag": "ALQ_1813d2d", "sample": "S7", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.miRNA-Seq.T.hg38 C3N-03205 LUAD miRNA-Seq tumor CPT0185090009 96a4d324-d8c0-4890-afbc-0660d9fc65d0_mirnaseq_gdc_realn.bam 303447320 BAM harmonized CPTAC3 b460e2c8-e933-4a47-b29c-383a1029cc35 f46d322b544ada12646d418f6af6cee7 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.RNA-Seq.chimeric.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.chimeric.gdc_realn.bam 49680713 BAM chimeric harmonized CPTAC3 9222be3b-8d8a-4428-a6cd-2d1d0faec7c7 29a032932afc8089e5ce1c3728876e0e {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.RNA-Seq.chimeric.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.chimeric.gdc_realn.bam 53683644 BAM chimeric harmonized CPTAC3 b7d0cf5a-b91a-4c7e-880a-f1a4aa277008 83de1bf28b4d2b58fe6a99a79b6d6191 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.RNA-Seq.genomic.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.genomic.gdc_realn.bam 9399058888 BAM genomic harmonized CPTAC3 f9e2b0fe-9679-43cc-9173-ef84211796cf ff2be1a7acfe5e17f0001adef51c4b0d {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.RNA-Seq.genomic.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.genomic.gdc_realn.bam 9084646275 BAM genomic harmonized CPTAC3 872032ca-1ea6-47d3-bfda-0e27f075346b ea6023a6bd27f534bbd82338fc0b2dc2 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.RNA-Seq.S11_L003_R1.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4175361887 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 43b0ebd2-bca9-4192-b868-28e2c828fc8c c4361793f6dbf151d272d3a7ff4bc079 {"aliquot_tag": "ALQ_1813d2d", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.RNA-Seq.S11_L003_R2.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4676252143 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 a38ce374-5eca-4b8a-866f-a5a0e590a169 60531edb6b258edf79db3497ba7a15fe {"aliquot_tag": "ALQ_1813d2d", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.RNA-Seq.S18_L005_R1.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 4206041848 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 fd859ae0-a877-493d-b6c1-4eb9eeb1d491 404a8764fb2b41c1e249d3bff61c5aa4 {"aliquot_tag": "ALQ_faada549", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.RNA-Seq.S18_L005_R2.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4582864920 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 41635ab5-5d6f-4ac9-b20b-74107d9062b5 85d7bd68ae7fbdf1bde13d65e673becd {"aliquot_tag": "ALQ_faada549", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.RNA-Seq.transcriptome.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.transcriptome.gdc_realn.bam 9882832390 BAM transcriptome harmonized CPTAC3 41379734-6383-40d0-beb3-ce7e8ad2f577 7bd0a7d94dc548193155a671faab183b {"aliquot_tag": "ALQ_1813d2d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.RNA-Seq.transcriptome.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.transcriptome.gdc_realn.bam 10876995331 BAM transcriptome harmonized CPTAC3 2fa0fe6f-c642-43b8-b6a3-17301a20482e d9f73432bc8d5e047cf23d382e0de755 {"aliquot_tag": "ALQ_faada549", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.WGS.N C3N-03205 LUAD WGS blood_normal CPT0185150002 CPT0185150002.WholeGenome.RP-1303.bam 108528834101 BAM submitted_aligned CPTAC3 9b8755ce-f53e-4dc1-aca8-cd268f1d7dea 3912d0f2bae9368cf1021e05773bfdfd {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03205.WGS.N.hg38 C3N-03205 LUAD WGS blood_normal CPT0185150002 d7bd333c-9f0c-4452-9d22-21e5bf68b70b_wgs_gdc_realn.bam 156231455930 BAM harmonized CPTAC3 65e7d4fb-79c2-48bd-be83-b39a7b2c2c97 ab13a57a128ba9a7f2f9ee31e0f810b1 {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03205.WGS.T C3N-03205 LUAD WGS tumor CPT0185090006 CPT0185090006.WholeGenome.RP-1303.bam 122312535120 BAM submitted_aligned CPTAC3 732f80c9-520c-43f1-9995-bacdbedf2e36 42349f519cf1d2adf66e89a43f594bcf {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.WGS.T.hg38 C3N-03205 LUAD WGS tumor CPT0185090006 13f1a500-dd71-4071-8a70-c4f72f4a6a29_wgs_gdc_realn.bam 176864868577 BAM harmonized CPTAC3 453b3310-20f3-477b-bda2-f05feb6e41c0 782770618e61e58d2823d23c2851c77a {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.WXS.A C3N-03205 LUAD WXS tissue_normal CPT0185110006 CPT0185110006.WholeExome.RP-1303.bam 16243347082 BAM submitted_aligned CPTAC3 4eb57993-14a6-4c3a-bf55-db3eb29d7d4c 4327826ace260418f82858f194a0f2fe {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.WXS.A.hg38 C3N-03205 LUAD WXS tissue_normal CPT0185110006 c0b104af-2c2d-4d86-b331-c80452577820_wxs_gdc_realn.bam 22664947568 BAM harmonized CPTAC3 53986e95-e3ee-42ce-a61a-8c876f801830 ad795ec4284f912bd70582968750e7ae {"aliquot_tag": "ALQ_913e20bc", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03205.WXS.N C3N-03205 LUAD WXS blood_normal CPT0185150002 CPT0185150002.WholeExome.RP-1303.bam 23502621043 BAM submitted_aligned CPTAC3 6d1bac35-c865-4b37-83c9-20baa6234a8c 3cbc10d614af818579cc6d0580beaabc {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03205.WXS.N.hg38 C3N-03205 LUAD WXS blood_normal CPT0185150002 d7bd333c-9f0c-4452-9d22-21e5bf68b70b_wxs_gdc_realn.bam 32249173818 BAM harmonized CPTAC3 bdc1a23c-bc0c-4590-99e9-d5a2a08ee508 89dfe80a1c0fde2adf029d65c0e0381c {"aliquot_tag": "ALQ_63d34265", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03205.WXS.T C3N-03205 LUAD WXS tumor CPT0185090006 CPT0185090006.WholeExome.RP-1303.bam 23214753523 BAM submitted_aligned CPTAC3 79bb21ae-e472-41a5-abad-e4dfbdeec994 444c49c86f06bff8d0d4e7610f300af3 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03205.WXS.T.hg38 C3N-03205 LUAD WXS tumor CPT0185090006 13f1a500-dd71-4071-8a70-c4f72f4a6a29_wxs_gdc_realn.bam 32202721264 BAM harmonized CPTAC3 802c0448-7252-4a8d-b47b-1bf6f0f3d72e fa98db2bcf9e310c26ac0ad33ab90862 {"aliquot_tag": "ALQ_6a12b8d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.MethArray.Green.A C3N-03210 LUAD Methylation_Array tissue_normal CPT0185180006 203561620077_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 7ac7c765-496c-4aed-8c69-21831a2ed41f b6fcce9ba4ee601a9493c692baf04a3a {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.MethArray.Green.T C3N-03210 LUAD Methylation_Array tumor CPT0185170006 203561450014_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 269b2d66-ac64-440f-b955-db268ac61fc9 708a131f38794b392c6182832a117240 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.MethArray.Red.A C3N-03210 LUAD Methylation_Array tissue_normal CPT0185180006 203561620077_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 207333b2-f117-4555-8cfb-9536d3a04572 0396a67b62381a4915f73d6ba9da9eb7 {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.MethArray.Red.T C3N-03210 LUAD Methylation_Array tumor CPT0185170006 203561450014_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 c160aa45-25fd-44fa-a3e0-9ae638f05509 fccf4127872298abb1fe17059ab641a4 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.miRNA-Seq.A.hg38 C3N-03210 LUAD miRNA-Seq tissue_normal CPT0185180009 cc1bc389-f542-46f4-8c62-f6522aa084b4_mirnaseq_gdc_realn.bam 235466337 BAM harmonized CPTAC3 a79631da-2ba3-4c54-8ceb-48a36f31bd5d 2812506ab97df7368368fade42712b58 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.miRNA-Seq.S20_L005_R1.T C3N-03210 LUAD miRNA-Seq tumor CPT0185170009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGTAGC_S20_L005_R1_001.unaln.bam 174209740 BAM S20_L005_R1 submitted_unaligned CPTAC3 5a9816d4-1959-42e8-abb1-326b3a89f7e6 b75205c5e9ea299c9a17744ee1991836 {"aliquot_tag": "ALQ_8ec1c88d", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.miRNA-Seq.S35_L007_R1.A C3N-03210 LUAD miRNA-Seq tissue_normal CPT0185180009 190712_UNC32-K00270_0192_BH7HL3BBXY_CTTGTA_S35_L007_R1_001.unaln.bam 202080942 BAM S35_L007_R1 submitted_unaligned CPTAC3 c93dc71b-ea35-40ed-90e3-94a1ea94e8cb 1badceda601cec1fbc71594d5dd9e1c2 {"aliquot_tag": "ALQ_c915f5c", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.miRNA-Seq.T.hg38 C3N-03210 LUAD miRNA-Seq tumor CPT0185170009 90366784-4620-410c-b4eb-a3f6a9f36673_mirnaseq_gdc_realn.bam 194023045 BAM harmonized CPTAC3 19736ca2-b4f8-49bc-a9fe-b96a627f6ca3 34dbae602646837d32f5c6c3c4309a5d {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.RNA-Seq.chimeric.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.chimeric.gdc_realn.bam 68494430 BAM chimeric harmonized CPTAC3 b817a199-6a32-412d-85f3-975a1558db19 f0731bf82142b229348eeda9a7306094 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.RNA-Seq.chimeric.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.chimeric.gdc_realn.bam 46467576 BAM chimeric harmonized CPTAC3 4a6c8f28-ddd3-4fb8-9dd2-8b265bd0837d 4bc83dfe78b801ae47594e3bff37ad13 {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.RNA-Seq.genomic.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.genomic.gdc_realn.bam 10686766694 BAM genomic harmonized CPTAC3 49d0523e-3529-476c-a43e-3abb76f26c30 ecad6df05e2b5ea33849b5247c495bb8 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.RNA-Seq.genomic.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.genomic.gdc_realn.bam 13161415704 BAM genomic harmonized CPTAC3 aa754e98-96f5-48b6-9a71-0d0cf5f8475a b168e64172ccb51dfbe562ef187eacf9 {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.RNA-Seq.S23_L006_R1.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R1_001.fastq.gz 4826334971 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 7a53c7bd-25d4-456f-868e-9a7406df1656 df3ac7dc957ebd7549e9b0ea0ad9abdc {"aliquot_tag": "ALQ_c915f5c", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.RNA-Seq.S23_L006_R2.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R2_001.fastq.gz 4985608615 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 a851467b-e5c4-4a41-8462-5f9567e7a3e4 f4de378055892e0ac33b1447f0e16ad1 {"aliquot_tag": "ALQ_c915f5c", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.RNA-Seq.S4_L001_R1.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R1_001.fastq.gz 4455352989 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 b3fcb1e2-deb3-4705-898a-b803f70309ac a00ecc08fb041db6320efbd2586e1f58 {"aliquot_tag": "ALQ_8ec1c88d", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.RNA-Seq.S4_L001_R2.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R2_001.fastq.gz 5116449263 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 a02fcc2e-4533-47e9-8c30-831d8aba8439 a83ad11c968e057dc9aba32f8b544660 {"aliquot_tag": "ALQ_8ec1c88d", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.RNA-Seq.transcriptome.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.transcriptome.gdc_realn.bam 11743420705 BAM transcriptome harmonized CPTAC3 4b70be4d-20ee-4a18-be16-cc97310388aa 9ea58b3c858409c7c5de3204edcc5e10 {"aliquot_tag": "ALQ_c915f5c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.RNA-Seq.transcriptome.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.transcriptome.gdc_realn.bam 10140439306 BAM transcriptome harmonized CPTAC3 d2ee4007-25ac-44e9-b555-b192c897068c 6f69b8f4549c5b27699f9b54809d06ed {"aliquot_tag": "ALQ_8ec1c88d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.WGS.N C3N-03210 LUAD WGS blood_normal CPT0185220002 CPT0185220002.WholeGenome.RP-1303.bam 71731958410 BAM submitted_aligned CPTAC3 9b8c993c-fbab-4b5d-8268-a7ffc56bdcc8 24167b2c8c3cf3ed13e7cdc5f0eece12 {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03210.WGS.N.hg38 C3N-03210 LUAD WGS blood_normal CPT0185220002 dd92c831-83c8-43a7-a2ae-6096acc30f44_wgs_gdc_realn.bam 105128649484 BAM harmonized CPTAC3 93a3331f-17c6-41a1-835d-e7e096c82f05 b04709ef90bcdf1229abc001b7fc6f13 {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03210.WGS.T C3N-03210 LUAD WGS tumor CPT0185170006 CPT0185170006.WholeGenome.RP-1303.bam 61421911127 BAM submitted_aligned CPTAC3 483a1d99-f850-42e7-8cba-2ff7b6a3895d 02f80a2839949bb59d5a893ea62d10d3 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.WGS.T.hg38 C3N-03210 LUAD WGS tumor CPT0185170006 4226ee89-6060-4c36-b114-d5f8cbf2fcfa_wgs_gdc_realn.bam 91490334584 BAM harmonized CPTAC3 9db89804-cbd4-4008-88f9-489a274bc5a4 b92b3c0f9c363f462f3b6fcefa64119a {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.WXS.A C3N-03210 LUAD WXS tissue_normal CPT0185180006 CPT0185180006.WholeExome.RP-1303.bam 22140229622 BAM submitted_aligned CPTAC3 c2cbcc35-1b02-4fa0-b262-e03b0d133b04 fd504a1c93ce9f7b4fa7615442dfbb9f {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.WXS.A.hg38 C3N-03210 LUAD WXS tissue_normal CPT0185180006 7e224af8-7d5e-43bb-8a36-23f61a15d9e9_wxs_gdc_realn.bam 31081173446 BAM harmonized CPTAC3 577f2e1d-6700-4960-ad07-3466b4133f38 2c9abf216c1186de56c510ef18b33b32 {"aliquot_tag": "ALQ_9c2e42cd", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03210.WXS.N C3N-03210 LUAD WXS blood_normal CPT0185220002 CPT0185220002.WholeExome.RP-1303.bam 28088940040 BAM submitted_aligned CPTAC3 6ddb6edf-cd5c-4a6a-b27c-c292c572cd47 ee36c623fe0eed874832db5ceb6eeaee {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03210.WXS.N.hg38 C3N-03210 LUAD WXS blood_normal CPT0185220002 dd92c831-83c8-43a7-a2ae-6096acc30f44_wxs_gdc_realn.bam 37971318477 BAM harmonized CPTAC3 b2496f08-0280-45f9-a5b7-684b41072279 ca5b2952d16228def80ba056bf94bcf2 {"aliquot_tag": "ALQ_5767ecdb", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03210.WXS.T C3N-03210 LUAD WXS tumor CPT0185170006 CPT0185170006.WholeExome.RP-1303.bam 18796752076 BAM submitted_aligned CPTAC3 3c76e8ad-8ac0-448f-89d3-ad2db319292a 7dd611a3103426a5dc694bc6080bab97 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03210.WXS.T.hg38 C3N-03210 LUAD WXS tumor CPT0185170006 4226ee89-6060-4c36-b114-d5f8cbf2fcfa_wxs_gdc_realn.bam 25647146917 BAM harmonized CPTAC3 19ad1fb8-596d-43fa-8cc4-3a1b24cbd303 4ad503083956a54c9db4027764fafef4 {"aliquot_tag": "ALQ_1e7ed51c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.MethArray.Green.A C3N-03211 PDA Methylation_Array tissue_normal CPT0209650007 203561620086_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 a0845b75-20c9-4d2e-ae27-be47563f365c 0ba24c8bd2108dee894e066ceedfaeb0 {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03211.MethArray.Green.T C3N-03211 PDA Methylation_Array tumor CPT0209640008 203561450073_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d3ad3b3e-68f6-43ce-9091-62d8e5f92f0f 2a051d007977f5659f2c5ac0c6fcc9b9 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.MethArray.Red.A C3N-03211 PDA Methylation_Array tissue_normal CPT0209650007 203561620086_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a0c4bb4d-f8a2-47cb-8f9a-82d26944932e f57de6321667bc88b043132a2730d511 {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03211.MethArray.Red.T C3N-03211 PDA Methylation_Array tumor CPT0209640008 203561450073_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 ab6f327f-d9e5-456d-b7a9-91a4ef6bafc7 55ba8155808671ecee898e3962cfd896 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.miRNA-Seq.S30_L004_R1.T C3N-03211 PDA miRNA-Seq tumor CPT0209640011 190813_UNC32-K00270_0196_AH5MCWBBXY_ATCACG_S30_L004_R1_001.unaln.bam 174449374 BAM S30_L004_R1 submitted_unaligned CPTAC3 2dc8da72-4ee2-43ac-b0fd-d32210479b31 eb93caa88ba103d4c85167fbf551b112 {"aliquot_tag": "ALQ_ee6c7692", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.miRNA-Seq.T.hg38 C3N-03211 PDA miRNA-Seq tumor CPT0209640011 3be3f8d3-4a87-4406-8b32-342ac6aa234a_mirnaseq_gdc_realn.bam 202061520 BAM harmonized CPTAC3 3f5d769b-652c-464d-b488-95ae2b69227c bc0885d388bdfdc6d0fc233367b9f206 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.RNA-Seq.chimeric.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.chimeric.gdc_realn.bam 173925371 BAM chimeric harmonized CPTAC3 87090459-9a51-4c27-bf5c-1476a4f05bec 2f31d5e5b1e9b1a447c1d7fe89abfe86 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.RNA-Seq.genomic.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.genomic.gdc_realn.bam 11866304330 BAM genomic harmonized CPTAC3 830e97c2-6202-434d-ae24-652e328e9783 5bcc7e3acfbd4166f2902293d6c510b6 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.RNA-Seq.S31_L008_R1.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4364728335 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 94e12957-beef-4ee5-8b65-012c89f8d49e 946114bb920762c5edb030da8e3af952 {"aliquot_tag": "ALQ_ee6c7692", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.RNA-Seq.S31_L008_R2.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 4563789886 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 7de4094f-10c7-4de4-987f-6c73577e720f 8d1dce54de2f392602b6dac38d91c58c {"aliquot_tag": "ALQ_ee6c7692", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.RNA-Seq.transcriptome.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.transcriptome.gdc_realn.bam 9934075596 BAM transcriptome harmonized CPTAC3 50a6a125-3307-49ef-a747-ff4c6fc90dc0 2290179f6eac71a74c15de877b5df144 {"aliquot_tag": "ALQ_ee6c7692", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.WGS.N C3N-03211 PDA WGS blood_normal CPT0209690002 CPT0209690002.WholeGenome.RP-1303.bam 64317613401 BAM submitted_aligned CPTAC3 b67e70c3-b014-4e38-8939-4f9c63dde2eb 792aa4e86153ca830993123d11540a1c {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03211.WGS.N.hg38 C3N-03211 PDA WGS blood_normal CPT0209690002 e989c046-a885-4bfd-a2a5-666bd6577e3a_wgs_gdc_realn.bam 94566685096 BAM harmonized CPTAC3 3ecf3417-d869-4012-aa60-e0b8e73f745a c93c362a9b1fd02e076d2731179107e9 {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03211.WGS.T C3N-03211 PDA WGS tumor CPT0209640008 CPT0209640008.WholeGenome.RP-1303.bam 116324530054 BAM submitted_aligned CPTAC3 fbf7bff9-fb5a-479d-88bc-e4e3beaaaede e7a7b2f939863aec4ea9a55715cb7705 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.WGS.T.hg38 C3N-03211 PDA WGS tumor CPT0209640008 906acd1b-9eb9-48bd-9545-ca45325aef9c_wgs_gdc_realn.bam 168925460812 BAM harmonized CPTAC3 b8b9e4db-c52e-4bd5-9df8-f6a761b7d127 64c530fa99b29d28230a95a7a51f4284 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.WXS.A C3N-03211 PDA WXS tissue_normal CPT0209650007 CPT0209650007.WholeExome.RP-1303.bam 20668553768 BAM submitted_aligned CPTAC3 33206eb0-f27d-436f-9ef7-a035fae18b6b d7935c589965144ae89b7740faf98271 {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03211.WXS.A.hg38 C3N-03211 PDA WXS tissue_normal CPT0209650007 53a48386-445c-45a7-b3bc-71c093a4e867_wxs_gdc_realn.bam 28572374124 BAM harmonized CPTAC3 c00e4521-eafe-405f-bbec-1e4d29f5fc50 92080c5924cc6063f65359dfb69d0c0b {"aliquot_tag": "ALQ_2374cb56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03211.WXS.N C3N-03211 PDA WXS blood_normal CPT0209690002 CPT0209690002.WholeExome.RP-1303.bam 29659973914 BAM submitted_aligned CPTAC3 ebb0b6d5-d487-4fe1-a7e1-d9151537699e d141de4c345a5bb55216b09fdb768e2d {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03211.WXS.N.hg38 C3N-03211 PDA WXS blood_normal CPT0209690002 e989c046-a885-4bfd-a2a5-666bd6577e3a_wxs_gdc_realn.bam 41309290103 BAM harmonized CPTAC3 e07abafe-6426-498c-8e5a-77e12b305e46 606eccbcc8f59cf603f16bb674ea800a {"aliquot_tag": "ALQ_96eed2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03211.WXS.T C3N-03211 PDA WXS tumor CPT0209640008 CPT0209640008.WholeExome.RP-1303.bam 46556819364 BAM submitted_aligned CPTAC3 e28a9f25-4482-4ba9-966d-21e298a06a4a dbaa8c74acd8af9b4cafe093827373ff {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03211.WXS.T.hg38 C3N-03211 PDA WXS tumor CPT0209640008 906acd1b-9eb9-48bd-9545-ca45325aef9c_wxs_gdc_realn.bam 64211975234 BAM harmonized CPTAC3 70e608bd-1d1e-46dc-87e2-6a50d7b83fc6 0a8a2c2d786eb9a9cb223c5523c59573 {"aliquot_tag": "ALQ_8eabff77", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.MethArray.Green.T C3N-03212 LUAD Methylation_Array tumor CPT0185230006 203219650065_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc771166-a79d-4ccf-aaea-5a68cea9d3c4 eada4f2472dd1056a73fba53efe72ca3 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.MethArray.Red.T C3N-03212 LUAD Methylation_Array tumor CPT0185230006 203219650065_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 daadd5f5-af27-48ad-be24-8fd28583de05 0421fdffd64722993509bf9fa3d16230 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.miRNA-Seq.A.hg38 C3N-03212 LUAD miRNA-Seq tissue_normal CPT0185250009 db99eab2-213a-4586-a1ba-3a05edc7f49f_mirnaseq_gdc_realn.bam 264438696 BAM harmonized CPTAC3 4628a2e3-fb83-4c66-a123-0587be468c85 9ed19588317ec2f9380e63833ca824e8 {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.miRNA-Seq.S47_L007_R1.T C3N-03212 LUAD miRNA-Seq tumor CPT0185230009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGAAG_S47_L007_R1_001.unaln.bam 194942531 BAM S47_L007_R1 submitted_unaligned CPTAC3 e21c0681-2c7c-4a7e-b717-c0a21a6b1470 06d22a0cb561bb52bf591d8e132f3518 {"aliquot_tag": "ALQ_fdd51ce3", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.miRNA-Seq.S8_L006_R1.A C3N-03212 LUAD miRNA-Seq tissue_normal CPT0185250009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L006_R1_001.unaln.bam 240170281 BAM S8_L006_R1 submitted_unaligned CPTAC3 9820e112-5fe5-41bc-afb5-3d51901006e4 a4e7101b09222127e3eaf6ad02cb5d64 {"aliquot_tag": "ALQ_7295e943", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.miRNA-Seq.T.hg38 C3N-03212 LUAD miRNA-Seq tumor CPT0185230009 11132687-690f-4240-9579-f9c024a0242e_mirnaseq_gdc_realn.bam 215491168 BAM harmonized CPTAC3 7016cd99-edba-4def-a725-d8dc1666d8c4 bcbb72675dfaf2ee5815b4aaa83ab8ba {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.RNA-Seq.chimeric.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.chimeric.gdc_realn.bam 86300962 BAM chimeric harmonized CPTAC3 e450a75b-db64-4cd1-b9ce-7a01a1e91007 31945eacff537d70f717cbe9ea70a1cf {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.RNA-Seq.chimeric.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.chimeric.gdc_realn.bam 67326607 BAM chimeric harmonized CPTAC3 270caa2f-994b-49cf-b422-5cd9dece0516 c054bb9d90f325387caa6e841b37702b {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.RNA-Seq.genomic.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.genomic.gdc_realn.bam 10961070390 BAM genomic harmonized CPTAC3 908e207a-0689-453a-9f37-993625c2e43f 6d2cad5465c44f8ac838fe5fcd414528 {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.RNA-Seq.genomic.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.genomic.gdc_realn.bam 10506039541 BAM genomic harmonized CPTAC3 db1948c7-5fea-414b-9a6b-9c7256a31a01 8dc28f858a1985efd07165c5aa3ab8c3 {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.RNA-Seq.S10_L003_R1.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R1_001.fastq.gz 5029004974 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 442830a1-16e0-4a52-9c30-c8b9e06e4756 be12b8d82b31de91925c514db12fd752 {"aliquot_tag": "ALQ_7295e943", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.RNA-Seq.S10_L003_R2.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5648598919 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 1fe294c0-dc14-452b-8d9d-2df13b28c230 c15bb2379c8c8ebb18412b8fa3fdb3fd {"aliquot_tag": "ALQ_7295e943", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.RNA-Seq.S17_L005_R1.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4969583207 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 ce93bb1f-bb32-4346-8bb8-e8f8354a3f98 46335f8df39a73e0e269712f1cafe48c {"aliquot_tag": "ALQ_fdd51ce3", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.RNA-Seq.S17_L005_R2.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5320519602 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 f06ed433-6d34-4733-9e57-ecb3cd73e819 d3f60f20e7be87296e06582a0c404b90 {"aliquot_tag": "ALQ_fdd51ce3", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.RNA-Seq.transcriptome.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.transcriptome.gdc_realn.bam 13092771972 BAM transcriptome harmonized CPTAC3 aad3aedf-ad25-4d6c-b299-4b54e36e8fe1 c5589402f04ae816851b1b90f1397ab4 {"aliquot_tag": "ALQ_7295e943", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.RNA-Seq.transcriptome.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.transcriptome.gdc_realn.bam 11565219838 BAM transcriptome harmonized CPTAC3 bc7de4b2-7f8d-4793-bd94-0d761372a79b 4f69a031308fd5824d2665c94ced334d {"aliquot_tag": "ALQ_fdd51ce3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.WGS.A C3N-03212 LUAD WGS tissue_normal CPT0185250006 CPT0185250006.WholeGenome.RP-1303.bam 97920197583 BAM submitted_aligned CPTAC3 0a3e54a4-ea27-41a6-8013-e5cee8d8acfa 8cd7c81f8b90f8efb136b526b355cac4 {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.WGS.A.hg38 C3N-03212 LUAD WGS tissue_normal CPT0185250006 b0dcebe1-2a7c-4b57-9103-daa736375506_wgs_gdc_realn.bam 145543588512 BAM harmonized CPTAC3 39a27b02-690a-4dd3-9046-3ef5289189b2 86d8413524a4d4e071f08ca96ffd25b5 {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.WGS.N C3N-03212 LUAD WGS blood_normal CPT0185290002 CPT0185290002.WholeGenome.RP-1303.bam 103048902661 BAM submitted_aligned CPTAC3 6863aa6b-c1d9-4a49-a4d7-ed8308764ff5 e58b6ac1b87d3852cc34643bc51175e5 {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03212.WGS.N.hg38 C3N-03212 LUAD WGS blood_normal CPT0185290002 345b1b1e-842a-450c-9ba5-330000607de5_wgs_gdc_realn.bam 151256750575 BAM harmonized CPTAC3 30ba375a-36c8-4467-b2ac-8edc3f1b3f45 8d8caa16428af3487c69bf82094f6d9d {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03212.WGS.T C3N-03212 LUAD WGS tumor CPT0185230006 CPT0185230006.WholeGenome.RP-1303.bam 48618993974 BAM submitted_aligned CPTAC3 91524dbf-9aae-4f62-a2be-815e678bb64b cc46868d1cb5369b3efbdf688d159f96 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.WGS.T.hg38 C3N-03212 LUAD WGS tumor CPT0185230006 68e8f36d-9fed-40d3-9f22-aa5be283c459_wgs_gdc_realn.bam 72463911667 BAM harmonized CPTAC3 d883d758-5128-46d4-9b2a-ddc74edb88a4 27a44785c1158a6e1f8da01a5030bd7e {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.WXS.A C3N-03212 LUAD WXS tissue_normal CPT0185250006 CPT0185250006.WholeExome.RP-1303.bam 40965777209 BAM submitted_aligned CPTAC3 f84175ec-dcc8-4b14-ba15-88bc6caf3648 5ea8a7534fe63c428368a36a470d427d {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.WXS.A.hg38 C3N-03212 LUAD WXS tissue_normal CPT0185250006 b0dcebe1-2a7c-4b57-9103-daa736375506_wxs_gdc_realn.bam 55530901309 BAM harmonized CPTAC3 a545e444-3003-4673-807d-83006c8d7787 0af3468066cb443dae8df53838a7006b {"aliquot_tag": "ALQ_e22af4d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03212.WXS.N C3N-03212 LUAD WXS blood_normal CPT0185290002 CPT0185290002.WholeExome.RP-1303.bam 24774662966 BAM submitted_aligned CPTAC3 f1230b7c-78e7-40ca-8484-5c64c3f64f9c b00727ba367a877c8c6c458406b81ea6 {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03212.WXS.N.hg38 C3N-03212 LUAD WXS blood_normal CPT0185290002 345b1b1e-842a-450c-9ba5-330000607de5_wxs_gdc_realn.bam 33789158956 BAM harmonized CPTAC3 fa381013-5ff5-432a-b485-f3b98073ff91 7e830898ca81a895f2db6a8650b28c28 {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03212.WXS.T C3N-03212 LUAD WXS tumor CPT0185230006 CPT0185230006.WholeExome.RP-1303.bam 23296727217 BAM submitted_aligned CPTAC3 5d02d4c8-fec0-4171-992d-baea6ae91e2f cbbd76f84da165c7842c8b6c523d1fbc {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03212.WXS.T.hg38 C3N-03212 LUAD WXS tumor CPT0185230006 68e8f36d-9fed-40d3-9f22-aa5be283c459_wxs_gdc_realn.bam 32388803944 BAM harmonized CPTAC3 0580be19-2fd3-49ab-83c0-38ff4c8ac752 80dd2b30aefb29cf9d85cbc0e2bc7cd4 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.MethArray.Green.A C3N-03222 LUAD Methylation_Array tissue_normal CPT0179170005 203219640158_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e159bb9b-82fd-4aef-919a-decd1307b486 b38ccf51e72c611dcce2bc36543085c7 {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.MethArray.Green.T C3N-03222 LUAD Methylation_Array tumor CPT0179140006 203219640158_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b14f313f-af22-41ca-860a-5a3e1067e602 a7e90dbde17da2cea67af41887330a1b {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.MethArray.Red.A C3N-03222 LUAD Methylation_Array tissue_normal CPT0179170005 203219640158_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 e5974f4a-fe28-44ed-9974-c3c1d5a3e21a cfdf661039dc39276e0ef0593130ff0e {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.MethArray.Red.T C3N-03222 LUAD Methylation_Array tumor CPT0179140006 203219640158_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 322062c5-b7df-44c1-bfa7-cca0eca5e6b3 432bd015099b65c8b93e86d7be5b592a {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.miRNA-Seq.A.hg38 C3N-03222 LUAD miRNA-Seq tissue_normal CPT0179170008 4194ccd7-af0f-4764-9463-77617afe52f5_mirnaseq_gdc_realn.bam 252502803 BAM harmonized CPTAC3 77756e53-1545-49d3-aa1b-b1948d091b28 b8f41819b7ac6a914c560b3059e6201c {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.miRNA-Seq.S16_L008_R1.A C3N-03222 LUAD miRNA-Seq tissue_normal CPT0179170008 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGTCA_S16_L008_R1_001.unaln.bam 230379981 BAM S16_L008_R1 submitted_unaligned CPTAC3 42d085e5-d41d-41c8-b493-e96e993928fe f95b5ee5c81adb0dedc49523efd5cadc {"aliquot_tag": "ALQ_e74680c3", "sample": "S16", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.miRNA-Seq.S21_L006_R1.T C3N-03222 LUAD miRNA-Seq tumor CPT0179140009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L006_R1_001.unaln.bam 169827738 BAM S21_L006_R1 submitted_unaligned CPTAC3 df5be827-6274-4041-bf6a-fa57c19a9895 75567ae34b88cb9efb91c8b897582428 {"aliquot_tag": "ALQ_d7e1ca85", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.miRNA-Seq.T.hg38 C3N-03222 LUAD miRNA-Seq tumor CPT0179140009 2f23c7ea-134f-42fe-94ca-0ebe4475e531_mirnaseq_gdc_realn.bam 185070694 BAM harmonized CPTAC3 e7655853-2af8-4f0f-b0a3-dea71ddba454 2c8cf99e88d5d22fb2c3def09439b54f {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.RNA-Seq.chimeric.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.chimeric.gdc_realn.bam 319445876 BAM chimeric harmonized CPTAC3 786d5695-273d-48ce-8771-f4e4e60be4bc 602e867b622b3b375527a1094bea31a6 {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.RNA-Seq.chimeric.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.chimeric.gdc_realn.bam 47434448 BAM chimeric harmonized CPTAC3 c7853177-ab65-4d0d-9b6b-ee6740357edc be51aad60dae613202f26f5909a945f8 {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.RNA-Seq.genomic.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.genomic.gdc_realn.bam 6370148329 BAM genomic harmonized CPTAC3 a1152f62-9cda-431e-99bb-33e8e6ed538a 98a82b65f2c776ea27377abde3a57edf {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.RNA-Seq.genomic.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.genomic.gdc_realn.bam 8932097818 BAM genomic harmonized CPTAC3 1ac35540-2c5f-4e76-be58-cda0b958947a ec898847aa4827bc9362772f6dbe354b {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.RNA-Seq.S3_L006_R1.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R1_001.fastq.gz 3854407920 FASTQ S3_L006_R1 submitted_unaligned CPTAC3 c0834c76-fcc6-401f-9fac-37340fa7ff63 a9012b32ba1bf74fd04f837c6def6d1f {"aliquot_tag": "ALQ_d7e1ca85", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.RNA-Seq.S3_L006_R2.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R2_001.fastq.gz 4355889607 FASTQ S3_L006_R2 submitted_unaligned CPTAC3 53e83de2-1ceb-4d09-a74c-c9da4e976c19 27fd0b01025ae0706fe3d5773779b910 {"aliquot_tag": "ALQ_d7e1ca85", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.RNA-Seq.S6_L002_R1.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R1_001.fastq.gz 2835925840 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 792f6b68-bda6-433f-8f65-8e4be86cf50c 252c749cddc4d85c03819f2b239a2564 {"aliquot_tag": "ALQ_e74680c3", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.RNA-Seq.S6_L002_R2.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R2_001.fastq.gz 3043831856 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 29f0fe72-de72-4f11-8471-14b319c9702b 9cc8ef435aa0d6b94dd3f8e386cca77d {"aliquot_tag": "ALQ_e74680c3", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.RNA-Seq.transcriptome.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.transcriptome.gdc_realn.bam 7119253924 BAM transcriptome harmonized CPTAC3 7b6fac1c-f783-4486-8c20-d27047090f1b 58ccb9bdfbf26d1956e771a1141df723 {"aliquot_tag": "ALQ_e74680c3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.RNA-Seq.transcriptome.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.transcriptome.gdc_realn.bam 10345582557 BAM transcriptome harmonized CPTAC3 52820dfe-ac50-4e61-ba40-c3b52886ca8a 8f6641f09dec9dbf4d494d3e153dfc4a {"aliquot_tag": "ALQ_d7e1ca85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.WGS.N C3N-03222 LUAD WGS blood_normal CPT0179260002 CPT0179260002.WholeGenome.RP-1303.bam 108708819593 BAM submitted_aligned CPTAC3 af2a62c5-ebc9-49ee-9f32-9050163a79c3 15036f84af744a931627255f4ce4e0fb {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03222.WGS.N.hg38 C3N-03222 LUAD WGS blood_normal CPT0179260002 28e97771-3bef-407b-9870-47d5cfee49b4_wgs_gdc_realn.bam 159064453363 BAM harmonized CPTAC3 5eb9110a-e4da-47b3-ba6e-f3df28598241 fbdff5351c14a66f45fe29410831e9ad {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03222.WGS.T C3N-03222 LUAD WGS tumor CPT0179140006 CPT0179140006.WholeGenome.RP-1303.bam 113654482621 BAM submitted_aligned CPTAC3 dc3bdaa1-d595-4c5d-9806-ea84d32c0387 2111ac5be6e6e9f1bb5b7e1df8b2a6ce {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.WGS.T.hg38 C3N-03222 LUAD WGS tumor CPT0179140006 5af6b5ce-93f8-4a2a-8b20-1509cf2e82a7_wgs_gdc_realn.bam 163145483197 BAM harmonized CPTAC3 7f97f771-79a0-4c21-a257-87d3525d4c89 1e48b30f04a18462dde11e0a0f6ce45d {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.WXS.A C3N-03222 LUAD WXS tissue_normal CPT0179170005 CPT0179170005.WholeExome.RP-1303.bam 24317020605 BAM submitted_aligned CPTAC3 3e8a1ce1-ba0c-4cbf-a7bc-b8b0c00a23a4 0f5f479052a11faabe27cc64d9205f3d {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.WXS.A.hg38 C3N-03222 LUAD WXS tissue_normal CPT0179170005 cff1369c-ec1d-4341-b515-1fee5902f5d3_wxs_gdc_realn.bam 33479154982 BAM harmonized CPTAC3 62e97c3e-8bf2-4e25-b786-498e1b2c1f46 d408fca666750409e7f49b3312a29fe4 {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03222.WXS.N C3N-03222 LUAD WXS blood_normal CPT0179260002 CPT0179260002.WholeExome.RP-1303.bam 18893588933 BAM submitted_aligned CPTAC3 3f37d78e-bf6c-487a-9f4b-8568850c0aa3 397bf74fd4e8d3d602aad3f3b9dd60eb {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03222.WXS.N.hg38 C3N-03222 LUAD WXS blood_normal CPT0179260002 28e97771-3bef-407b-9870-47d5cfee49b4_wxs_gdc_realn.bam 26466676969 BAM harmonized CPTAC3 8aeaf54e-abc6-4689-9cb7-0858bbbd8436 902619168518d33becfc907f8688a2d0 {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03222.WXS.T C3N-03222 LUAD WXS tumor CPT0179140006 CPT0179140006.WholeExome.RP-1303.bam 20396682125 BAM submitted_aligned CPTAC3 f5a0c84a-3d44-492c-aefd-137070ffc5e1 c2da9093c6320904e3af77dc66bda4d9 {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03222.WXS.T.hg38 C3N-03222 LUAD WXS tumor CPT0179140006 5af6b5ce-93f8-4a2a-8b20-1509cf2e82a7_wxs_gdc_realn.bam 29004977899 BAM harmonized CPTAC3 3a8ccbe9-b074-413b-bea9-14bef415088a 0a20a8688984027d6e44458bec941e3c {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.MethArray.Green.A C3N-03225 LUAD Methylation_Array tissue_normal CPT0191600006 203561450073_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a4580af6-d4d7-49f8-bdaf-81f7a7d05b18 f23dcd7cd679aa59f6fcd19b6a332f29 {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03225.MethArray.Green.T C3N-03225 LUAD Methylation_Array tumor CPT0191570006 203561620095_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0373bffb-bda0-491e-bc67-cb21e33ee0b2 a0fd2eb9ba90259aeb9c9ec5a2b99d1f {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.MethArray.Red.A C3N-03225 LUAD Methylation_Array tissue_normal CPT0191600006 203561450073_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 8396c34e-d760-4b76-a76a-b19534f39015 bd8142a8800cbc36a4d742e1632678ca {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03225.MethArray.Red.T C3N-03225 LUAD Methylation_Array tumor CPT0191570006 203561620095_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 00f26457-1e61-4bed-bedc-787c3821d8fb 830f5afa5fe4fde5b950c83cdd9cd85f {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.miRNA-Seq.S46_L004_R1.T C3N-03225 LUAD miRNA-Seq tumor CPT0191570009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACCGG_S46_L004_R1_001.unaln.bam 203106095 BAM S46_L004_R1 submitted_unaligned CPTAC3 9b9d0d43-defc-4dcb-a903-8119e985df33 a915514b75ec605adc92854d2123624c {"aliquot_tag": "ALQ_2db5ae16", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.miRNA-Seq.T.hg38 C3N-03225 LUAD miRNA-Seq tumor CPT0191570009 d7bd3002-bb3d-48f5-9ea6-0167b9a632d6_mirnaseq_gdc_realn.bam 224384268 BAM harmonized CPTAC3 aa64caa5-ef95-4ed0-a973-6674cdf2ab3f 95aed854e548c0e2ce611be618f832a2 {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.RNA-Seq.chimeric.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.chimeric.gdc_realn.bam 47426715 BAM chimeric harmonized CPTAC3 12618c88-39ce-4e35-8a32-27e883c1a927 fe8c51a381b0912b099778806db6844b {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.RNA-Seq.genomic.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.genomic.gdc_realn.bam 10981323545 BAM genomic harmonized CPTAC3 63f346a1-4110-4787-a893-986528433509 6fe2a473dd1aecd4657d2fab302cd09b {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.RNA-Seq.S26_L007_R1.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R1_001.fastq.gz 4012128500 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 c7ac4fd6-6579-4ff7-a7f4-0cf092ea97d1 fcd9cd0a8f784bd3eaa47f0a9178008e {"aliquot_tag": "ALQ_2db5ae16", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.RNA-Seq.S26_L007_R2.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R2_001.fastq.gz 4474190291 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 f32ff77c-b1e3-41fe-9996-9bed1ed8742a 7979d6625dce1a7b608fb9e49d2b6b6e {"aliquot_tag": "ALQ_2db5ae16", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.RNA-Seq.transcriptome.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.transcriptome.gdc_realn.bam 8991275655 BAM transcriptome harmonized CPTAC3 98355be6-e599-4203-b0e3-8d87a2a9a66a 2292ee622b3c58e67f7e8c2d6b29e707 {"aliquot_tag": "ALQ_2db5ae16", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.WGS.N C3N-03225 LUAD WGS blood_normal CPT0193270002 CPT0193270002.WholeGenome.RP-1303.bam 78573255202 BAM submitted_aligned CPTAC3 c443432b-4168-4781-b03a-1bd87acba675 2e8071719ec5c4d92461f794d76a878c {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03225.WGS.N.hg38 C3N-03225 LUAD WGS blood_normal CPT0193270002 83e0ecc7-e856-40e6-abd9-f5bc5377442d_wgs_gdc_realn.bam 115388705849 BAM harmonized CPTAC3 ed9f5f70-e453-4995-b7de-5f2ac584207a 3108b23926863e0cbc22c2e78d3dce0d {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03225.WGS.T C3N-03225 LUAD WGS tumor CPT0191570006 CPT0191570006.WholeGenome.RP-1303.bam 65733495847 BAM submitted_aligned CPTAC3 1460c894-60c6-4cf7-a0ba-9541428e7e22 6ce24f3d68c3f99c1e4e697c01178978 {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.WGS.T.hg38 C3N-03225 LUAD WGS tumor CPT0191570006 650093fa-5d50-4a15-ad78-dcdb4b5398b7_wgs_gdc_realn.bam 95687723056 BAM harmonized CPTAC3 e8f6a9e7-87fe-4df8-aab8-a1e7cb90cf32 79632ad1cad18cf085da632800fedf12 {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.WXS.A C3N-03225 LUAD WXS tissue_normal CPT0191600006 CPT0191600006.WholeExome.RP-1303.bam 25542174916 BAM submitted_aligned CPTAC3 dc1103a1-262a-43ca-8900-3a6e100c2f22 d3dddb44b45b36f85a59ede9cf4ff782 {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03225.WXS.A.hg38 C3N-03225 LUAD WXS tissue_normal CPT0191600006 6cd01df9-7b3a-40d2-961e-6aa269cbd61a_wxs_gdc_realn.bam 35529965093 BAM harmonized CPTAC3 89103ad9-1937-4a63-b4cb-d0283029ab35 a699ef882c04dc973169e9d0fccd6834 {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03225.WXS.N C3N-03225 LUAD WXS blood_normal CPT0193270002 CPT0193270002.WholeExome.RP-1303.bam 26365503932 BAM submitted_aligned CPTAC3 d4449b83-5df8-4d5b-960c-9ac1187980f8 06d116bfcd9e13ebae329750ad1c8b78 {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03225.WXS.N.hg38 C3N-03225 LUAD WXS blood_normal CPT0193270002 83e0ecc7-e856-40e6-abd9-f5bc5377442d_wxs_gdc_realn.bam 36140649030 BAM harmonized CPTAC3 88df6125-801b-4982-89ea-857f39903b46 acfa9ea89fac52f9eb4eb0d379480598 {"aliquot_tag": "ALQ_30fd560f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03225.WXS.T C3N-03225 LUAD WXS tumor CPT0191570006 CPT0191570006.WholeExome.RP-1303.bam 20323311246 BAM submitted_aligned CPTAC3 d4910270-c741-4e92-9cca-ce2bb54fd9a0 5abcd13fe7120254458779928cccf1d1 {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03225.WXS.T.hg38 C3N-03225 LUAD WXS tumor CPT0191570006 650093fa-5d50-4a15-ad78-dcdb4b5398b7_wxs_gdc_realn.bam 27659947723 BAM harmonized CPTAC3 56d72469-a5b7-44dd-ba13-de7c0209738f d043d7ebd5cf38fe500a1dd8be60ad6e {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.MethArray.Green.A C3N-03226 HNSCC Methylation_Array tissue_normal CPT0194440009 203271750047_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 6e32b191-04f3-4d86-9ab7-0ef1c8072098 add952e65ed4bb1135b46aa801d45af0 {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.MethArray.Green.T C3N-03226 HNSCC Methylation_Array tumor CPT0194420009 203271750083_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a21ddfd2-10b8-45f0-969b-d49439d41cbe 4bb47be781c073d89051eb5619e7b91d {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.MethArray.Red.A C3N-03226 HNSCC Methylation_Array tissue_normal CPT0194440009 203271750047_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 d91daba2-da21-45ba-a590-d8d73e635304 45fa8ea5cbd776b2ecd8257a5536e727 {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.MethArray.Red.T C3N-03226 HNSCC Methylation_Array tumor CPT0194420009 203271750083_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 8b244ed6-2189-4c04-b5bc-4ac071c291b2 3fce7a38babfa349286a1588e20883d6 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.miRNA-Seq.A.hg38 C3N-03226 HNSCC miRNA-Seq tissue_normal CPT0194440006 945c3313-f2f1-4be4-bfeb-7f5700a30cc9_mirnaseq_gdc_realn.bam 306652734 BAM harmonized CPTAC3 4836eb0d-b844-4242-a38a-e6c523cfa92e f1b56a44c3f9b40efd7bcace4e7afd6e {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.miRNA-Seq.S20_L003_R1.A C3N-03226 HNSCC miRNA-Seq tissue_normal CPT0194440006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L003_R1_001.unaln.bam 268128599 BAM S20_L003_R1 submitted_unaligned CPTAC3 456aa026-2214-42a1-8143-e7736600bbc2 063df227bed1c430390d86230a446be0 {"aliquot_tag": "ALQ_63ce3555", "sample": "S20", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.miRNA-Seq.S9_L003_R1.T C3N-03226 HNSCC miRNA-Seq tumor CPT0194420013 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L003_R1_001.unaln.bam 198073258 BAM S9_L003_R1 submitted_unaligned CPTAC3 9b275683-76be-4ea5-a51d-e241b0694a22 f254be1a243eb72335a2b010c087e169 {"aliquot_tag": "ALQ_85ff053b", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.miRNA-Seq.T.hg38 C3N-03226 HNSCC miRNA-Seq tumor CPT0194420013 ffb76a0a-0389-40f3-91d2-f90311de734b_mirnaseq_gdc_realn.bam 223332790 BAM harmonized CPTAC3 bc1c46fd-6eaa-456c-909d-d0aa1721a4b7 c2c900d2073946110d63ad17d404e320 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.chimeric.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.chimeric.gdc_realn.bam 232497609 BAM chimeric harmonized CPTAC3 52a0de48-6258-4040-890c-c12f06c4fb55 7eb576ba2afc012c34d3d8a2cac40217 {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.chimeric.gdc_realn.bam 165316392 BAM chimeric harmonized CPTAC3 9e1ef9aa-dce3-4f5d-8735-9b39ac24c2e6 176de5cfb3f5f1e467b157554815a1a8 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.chimeric.gdc_realn.bam 27552740 BAM chimeric harmonized CPTAC3 e87ec417-cea2-43aa-98bd-1fe6d82f4a75 62693be15e53ba24a24847af10ef12ce {"aliquot_tag": "ALQ_9e71c2d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.chimeric.gdc_realn.bam 155378516 BAM chimeric harmonized CPTAC3 f45ea8c4-4ab1-44d3-8d1f-22c43d728f64 e83a6dc5a83b5b4e58ec29a9f000f8af {"aliquot_tag": "ALQ_707fa3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.genomic.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.genomic.gdc_realn.bam 7364502693 BAM genomic harmonized CPTAC3 efd07ae7-5c16-40b3-81dc-c94c6a8f1b5c 75bcd03bc38a1e1fbc2d37a78704717b {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.genomic.gdc_realn.bam 8067981694 BAM genomic harmonized CPTAC3 42758160-3ad8-46fe-af42-3b3b8a6d5830 dfb6f07e98ba31ac00f061ed8a6ad1b2 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.genomic.gdc_realn.bam 11636148223 BAM genomic harmonized CPTAC3 f661b426-e37e-4819-9911-f29852fdf1cd 7b688c1c36c24efad4489a1d2db4350a {"aliquot_tag": "ALQ_9e71c2d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.genomic.gdc_realn.bam 7868796328 BAM genomic harmonized CPTAC3 0d537fcd-7694-4997-8307-dc086585ded0 6a128d2ba41eef56063bce2838f07e56 {"aliquot_tag": "ALQ_707fa3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.S19_L005_R1.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R1_001.fastq.gz 3337682029 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 4b11c02d-2d13-4ffe-a059-a46a13014c83 8f169bb34d7ee902f1214cfd10ad3530 {"aliquot_tag": "ALQ_63ce3555", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.RNA-Seq.S19_L005_R2.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R2_001.fastq.gz 3798138932 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 596e4a21-29ea-47bc-acf9-65a113623de6 ec89cd533a6ad19cfe5339adadf972b3 {"aliquot_tag": "ALQ_63ce3555", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.RNA-Seq.S46_R1.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R1_001.fastq.gz 5112067959 FASTQ S46_R1 submitted_unaligned CPTAC3 6f752364-f87a-410a-8512-db763c674b86 1e241cf7f69b57f2aef8b95cef583ad8 {"aliquot_tag": "ALQ_9e71c2d7", "sample": "S46", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.S46_R2.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R2_001.fastq.gz 6309454142 FASTQ S46_R2 submitted_unaligned CPTAC3 3406a254-a751-47ab-9d61-aa21767cc1b9 0da84b011069310e0bd735f3151805d2 {"aliquot_tag": "ALQ_9e71c2d7", "sample": "S46", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.S5_L008_R1.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R1_001.fastq.gz 3751670872 FASTQ S5_L008_R1 submitted_unaligned CPTAC3 4decb474-0fad-43d5-afb4-cc2bfd005db0 2bb1cfadea0634ba032313fa80c1334f {"aliquot_tag": "ALQ_85ff053b", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.S5_L008_R2.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4236361947 FASTQ S5_L008_R2 submitted_unaligned CPTAC3 2041837d-d9c8-4926-82ba-1e45620b9459 16cd7f4bf86d479c46101edfdae2af59 {"aliquot_tag": "ALQ_85ff053b", "sample": "S5", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.S83_R1.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R1_001.fastq.gz 5781448110 FASTQ S83_R1 submitted_unaligned CPTAC3 76f9991e-87af-468f-b1fa-b2b274c8ae91 165e7f35bdd57b38e61c274871fcbf35 {"aliquot_tag": "ALQ_707fa3fb", "sample": "S83", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.S83_R2.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R2_001.fastq.gz 5971307518 FASTQ S83_R2 submitted_unaligned CPTAC3 16dc21a3-1cd9-412f-8728-96ae5855ffee 49b7f1b1643dba0a4091f74a5bc11422 {"aliquot_tag": "ALQ_707fa3fb", "sample": "S83", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.transcriptome.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.transcriptome.gdc_realn.bam 10217225460 BAM transcriptome harmonized CPTAC3 4f0cb60f-9f9f-4b25-9b24-9a6823ce62b4 c9286e90ae0d921570728f17ba53d627 {"aliquot_tag": "ALQ_63ce3555", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.transcriptome.gdc_realn.bam 11970378937 BAM transcriptome harmonized CPTAC3 9854edd5-ced4-4a18-a063-83df8b3ffb56 92ee54c727246b9279b3ce06b13714b0 {"aliquot_tag": "ALQ_85ff053b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.transcriptome.gdc_realn.bam 9495132097 BAM transcriptome harmonized CPTAC3 1c40fccf-bb01-4019-bf33-3b64d8e58c81 a913525e0897521caa1945bb3f1e7141 {"aliquot_tag": "ALQ_9e71c2d7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.transcriptome.gdc_realn.bam 7479534732 BAM transcriptome harmonized CPTAC3 b98b898b-9c11-4f8d-acd7-bef7c0efceae 6ddf7f4f9c4c7ffe593870ee2d7372e3 {"aliquot_tag": "ALQ_707fa3fb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.WGS.N C3N-03226 HNSCC WGS blood_normal CPT0194530002 CPT0194530002.WholeGenome.RP-1303.bam 83787425758 BAM submitted_aligned CPTAC3 acfb912c-3207-47e9-b6a4-e23bb9484be9 1f566c2209472fdbd26176d71636f042 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03226.WGS.N.hg38 C3N-03226 HNSCC WGS blood_normal CPT0194530002 8de2dbc8-c6e1-4920-877f-00ac954e87cc_wgs_gdc_realn.bam 120821825260 BAM harmonized CPTAC3 e82e4a19-d2b0-4e3e-96f2-f31efa5e939d 24666c6c6a1512f851cbaf0af81ce8a0 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03226.WGS.T C3N-03226 HNSCC WGS tumor CPT0194420009 CPT0194420009.WholeGenome.RP-1303.bam 85835402790 BAM submitted_aligned CPTAC3 bd36e052-f33d-4dec-85f4-20e2b6121097 5780e918f8102b67d637f08f3a178278 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.WGS.T.hg38 C3N-03226 HNSCC WGS tumor CPT0194420009 7664042d-ae27-4d60-9731-0c5cd47b6cce_wgs_gdc_realn.bam 127274141310 BAM harmonized CPTAC3 49227ac8-8976-4f78-bda8-ae721b0f3a60 eba844ca0f527f0e5e8e104f533b6f75 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.WXS.A C3N-03226 HNSCC WXS tissue_normal CPT0194440009 CPT0194440009.WholeExome.RP-1303.bam 24428758098 BAM submitted_aligned CPTAC3 043f272e-1592-40bc-9fe5-878f7ec24fb9 157867079aa63bc4d13c57ca9206a318 {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.WXS.A.hg38 C3N-03226 HNSCC WXS tissue_normal CPT0194440009 ef963d98-73e6-433e-bd84-0390d2c9a1a5_wxs_gdc_realn.bam 34323110173 BAM harmonized CPTAC3 326d0c89-37ec-46d3-8308-ff4056b70c49 aa896732818e19449f1748bf04ce2c8c {"aliquot_tag": "ALQ_f37128c4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03226.WXS.N C3N-03226 HNSCC WXS blood_normal CPT0194530002 CPT0194530002.WholeExome.RP-1303.bam 25392962324 BAM submitted_aligned CPTAC3 302dcc7e-809e-4f10-9fce-b90445f6307a 3e93912a20a80d04cf1f83c4ceb87078 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03226.WXS.N.hg38 C3N-03226 HNSCC WXS blood_normal CPT0194530002 8de2dbc8-c6e1-4920-877f-00ac954e87cc_wxs_gdc_realn.bam 34429694025 BAM harmonized CPTAC3 3c8cb21b-c84b-48da-b870-d4b941b0b530 764a81784415237014e48a0e0cfcd498 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03226.WXS.T C3N-03226 HNSCC WXS tumor CPT0194420009 CPT0194420009.WholeExome.RP-1303.bam 23112506510 BAM submitted_aligned CPTAC3 5f61df23-b135-4421-a013-b86cc5ba0b1a 5ead4a9e7af1dc2c71d8bbbdd9677699 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03226.WXS.T.hg38 C3N-03226 HNSCC WXS tumor CPT0194420009 7664042d-ae27-4d60-9731-0c5cd47b6cce_wxs_gdc_realn.bam 31628258860 BAM harmonized CPTAC3 60017027-d9c3-4ef5-b9c2-199b29dacd42 684287a25d96769c078192b43b1765c3 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.MethArray.Green.A C3N-03233 LUAD Methylation_Array tissue_normal CPT0180740006 203219670118_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9463f036-71cc-4aa2-8614-e122f0f75fee 40cccf21a5f323a8399060c4074c3b72 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.MethArray.Green.T C3N-03233 LUAD Methylation_Array tumor CPT0180730006 203220070156_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3928f56b-ca25-4240-aaf7-6a28e3ab0c84 68179f5807a6f8fa5aeb4cf468e93fb3 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.MethArray.Red.A C3N-03233 LUAD Methylation_Array tissue_normal CPT0180740006 203219670118_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 db4c1c5c-c72a-46da-a44b-493d88b341ca d8c3ae1a0a89b2ea8a80ea7dfdbd1345 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.MethArray.Red.T C3N-03233 LUAD Methylation_Array tumor CPT0180730006 203220070156_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 6ed6a0b1-5641-4d3f-8b58-aee70e52784b 7901f99d227245cbc2752a87860929bc {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.miRNA-Seq.A.hg38 C3N-03233 LUAD miRNA-Seq tissue_normal CPT0180740009 4a6a178a-0fa1-4348-9f10-fafa4606af97_mirnaseq_gdc_realn.bam 224994182 BAM harmonized CPTAC3 614dbbf1-edbc-443d-a002-3acfcb125080 6d98b6848703c2bd8dcb2370a8103fc8 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.miRNA-Seq.S17_L008_R1.A C3N-03233 LUAD miRNA-Seq tissue_normal CPT0180740009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCGTCC_S17_L008_R1_001.unaln.bam 202396529 BAM S17_L008_R1 submitted_unaligned CPTAC3 a7f9e7d0-d11f-4798-9bb5-82212c05080f ab3522495a7d1cb85f2028923bfcee75 {"aliquot_tag": "ALQ_4d007ee7", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.miRNA-Seq.S45_L007_R1.T C3N-03233 LUAD miRNA-Seq tumor CPT0180730009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L007_R1_001.unaln.bam 181656693 BAM S45_L007_R1 submitted_unaligned CPTAC3 41d81d94-710f-4f0f-9adf-b97fa886cd97 e3cc82e75e109aabff92b714790a6e00 {"aliquot_tag": "ALQ_ff20a2f7", "sample": "S45", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.miRNA-Seq.T.hg38 C3N-03233 LUAD miRNA-Seq tumor CPT0180730009 6ab746e5-c9e0-47e8-889b-3e06f70bb9c4_mirnaseq_gdc_realn.bam 198334621 BAM harmonized CPTAC3 a650acb6-4da2-4732-8844-192b4b83cfdc 58bc1c3d93041797e256b9a6095be4f4 {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.RNA-Seq.chimeric.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.chimeric.gdc_realn.bam 209193687 BAM chimeric harmonized CPTAC3 8d5def53-65f6-4680-8eba-8c549ed2b004 9a42fb53d5d9adacc5354c969ea269f4 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.RNA-Seq.chimeric.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.chimeric.gdc_realn.bam 56558535 BAM chimeric harmonized CPTAC3 228dea37-aa56-4085-bc2a-0c00afefca49 5b35844656bd8c5149513a0377c2ed4a {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.RNA-Seq.genomic.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.genomic.gdc_realn.bam 6539163199 BAM genomic harmonized CPTAC3 fa1444cd-c008-4a3f-8f8c-c1a737e5f782 3421ea16c8600a31d54aa86a9bf78ba6 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.RNA-Seq.genomic.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.genomic.gdc_realn.bam 10094018077 BAM genomic harmonized CPTAC3 2581d791-5743-48fb-826e-38020a9f2431 1227d7a2cbb8ed9591866eb26369be94 {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.RNA-Seq.S22_L006_R1.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R1_001.fastq.gz 4398868393 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 ab692eb9-6f56-495b-8ba5-5c472daa1a88 4bee877dcf1d2f362ca6f98c796ecb01 {"aliquot_tag": "ALQ_ff20a2f7", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.RNA-Seq.S22_L006_R2.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R2_001.fastq.gz 4853859544 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 e29e0ecb-5dac-4434-964a-490376a85281 8f4b0a6007e26fa002468729a53ddf23 {"aliquot_tag": "ALQ_ff20a2f7", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.RNA-Seq.S8_L002_R1.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R1_001.fastq.gz 2969720597 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 9f50a476-f013-4261-8add-8414f62ddc93 8f00b2ad398359333fa069b3e0dda95b {"aliquot_tag": "ALQ_4d007ee7", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.RNA-Seq.S8_L002_R2.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R2_001.fastq.gz 2950322321 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 1b6ffd9d-8602-402e-b67b-d7a7ce0ac722 ea921770be9fa73680cf22d8ede2638e {"aliquot_tag": "ALQ_4d007ee7", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.RNA-Seq.transcriptome.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.transcriptome.gdc_realn.bam 6503589886 BAM transcriptome harmonized CPTAC3 7c2e6772-5f41-4c2a-bef4-03bdde88d581 29e55ffe0165ce5c1192d34555af27e7 {"aliquot_tag": "ALQ_4d007ee7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.RNA-Seq.transcriptome.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.transcriptome.gdc_realn.bam 9946907669 BAM transcriptome harmonized CPTAC3 1ed28dbf-0652-482f-9e9f-fd58f0e82fc9 f00d575292d56df6ac9901f0946e99f5 {"aliquot_tag": "ALQ_ff20a2f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.WGS.N C3N-03233 LUAD WGS blood_normal CPT0180830002 CPT0180830002.WholeGenome.RP-1303.bam 61241495192 BAM submitted_aligned CPTAC3 f518d261-79d4-4d57-8273-2b8f37fa89a9 9f4d695e3651ba5ecc923434f583778b {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03233.WGS.N.hg38 C3N-03233 LUAD WGS blood_normal CPT0180830002 636b36de-3e38-4ecb-8d7e-48ca57d0e105_wgs_gdc_realn.bam 89231500591 BAM harmonized CPTAC3 e41a62b8-cd92-40da-8a77-98df052dfb6b a0fc51b04aea8d92ac8a8c81416adc9e {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03233.WGS.T C3N-03233 LUAD WGS tumor CPT0180730006 CPT0180730006.WholeGenome.RP-1303.bam 106550781126 BAM submitted_aligned CPTAC3 c7695f8e-7a09-4400-8f60-8529f7ce0522 d80c1955f6e25f5760fa08da449d3f47 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.WGS.T.hg38 C3N-03233 LUAD WGS tumor CPT0180730006 c700325c-8aba-42cf-b647-18fa1c6f878c_wgs_gdc_realn.bam 155198650160 BAM harmonized CPTAC3 ced6ddcf-acb1-4859-9434-aba2b6fa83e7 dccde8742714475f1b7d234dd3768ba4 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.WXS.A C3N-03233 LUAD WXS tissue_normal CPT0180740006 CPT0180740006.WholeExome.RP-1303.bam 19449554579 BAM submitted_aligned CPTAC3 40135735-8c43-4357-9dbe-39c79077d316 96dbbd177e2eb1a2b5cd737629e63945 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.WXS.A.hg38 C3N-03233 LUAD WXS tissue_normal CPT0180740006 fd02e563-ba74-44af-83a7-d60a7858dcad_wxs_gdc_realn.bam 26548202681 BAM harmonized CPTAC3 4df02191-936c-4450-9191-a34bb5c333f4 411e5b8f2ac24ca60c870752e0978e3d {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03233.WXS.N C3N-03233 LUAD WXS blood_normal CPT0180830002 CPT0180830002.WholeExome.RP-1303.bam 21584344446 BAM submitted_aligned CPTAC3 76d0eb89-2c30-4062-bc01-9e2a133aa514 d1521d4a03e8f44345aadc2d67897025 {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03233.WXS.N.hg38 C3N-03233 LUAD WXS blood_normal CPT0180830002 636b36de-3e38-4ecb-8d7e-48ca57d0e105_wxs_gdc_realn.bam 29874282977 BAM harmonized CPTAC3 735636d7-7006-433a-b81d-203f334f2f80 a6ed7480ef78ca308fbd552cbb50577e {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03233.WXS.T C3N-03233 LUAD WXS tumor CPT0180730006 CPT0180730006.WholeExome.RP-1303.bam 24112184013 BAM submitted_aligned CPTAC3 6a7062bb-1fe7-49f5-ba51-3e2f6a37804b 0690ad3a8edeeabb0ee031a62eb46958 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03233.WXS.T.hg38 C3N-03233 LUAD WXS tumor CPT0180730006 c700325c-8aba-42cf-b647-18fa1c6f878c_wxs_gdc_realn.bam 32755281805 BAM harmonized CPTAC3 4b7d019f-7160-4856-8608-41bd5e46b5fc d87ffb1e702e6ef2ca9859b2836c761d {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.MethArray.Green.A C3N-03238 LUAD Methylation_Array tissue_normal CPT0193900006 203219650127_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 70a42f4f-5974-46ac-93ac-08ebd3ae2632 571d74a23b189af5d70a2111209c4c3b {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.MethArray.Green.T C3N-03238 LUAD Methylation_Array tumor CPT0193870006 203219650176_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3746b636-3eb6-4782-9294-333dbf50635c 949104468114aa9b69f92546ee43547a {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.MethArray.Red.A C3N-03238 LUAD Methylation_Array tissue_normal CPT0193900006 203219650127_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 63d2fe67-2bd9-4b53-9638-904cfba17f53 6cc9eef137071db9a13848e6c5dd514f {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.MethArray.Red.T C3N-03238 LUAD Methylation_Array tumor CPT0193870006 203219650176_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 896fab69-9962-4534-8f61-22a2c5cafbd3 b331b9ff8bb1e5c978ac1d4696e28277 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.miRNA-Seq.A.hg38 C3N-03238 LUAD miRNA-Seq tissue_normal CPT0193900009 4df1f42a-3bcf-4190-a07d-9d2f81d53684_mirnaseq_gdc_realn.bam 275423474 BAM harmonized CPTAC3 53dcecd1-f014-435e-a0a3-28ae316c29ff 8d5e553a0f94d7c4b9136063139c0168 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.miRNA-Seq.S14_L006_R1.A C3N-03238 LUAD miRNA-Seq tissue_normal CPT0193900009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTCAA_S14_L006_R1_001.unaln.bam 251652919 BAM S14_L006_R1 submitted_unaligned CPTAC3 7c703b6a-350e-4958-8885-bd7bb4590554 5c31f0272c7faa2ea01a8ba25b182675 {"aliquot_tag": "ALQ_7fc8a354", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.miRNA-Seq.S4_L008_R1.T C3N-03238 LUAD miRNA-Seq tumor CPT0193870009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L008_R1_001.unaln.bam 185720836 BAM S4_L008_R1 submitted_unaligned CPTAC3 ed84e3a2-868c-4a54-907c-6f4b6246a6e4 26fd73c4aa636af003ddacad3106d448 {"aliquot_tag": "ALQ_6b4ace1", "sample": "S4", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.miRNA-Seq.T.hg38 C3N-03238 LUAD miRNA-Seq tumor CPT0193870009 819165ed-9ec3-4c05-a16e-b058e05f2c1d_mirnaseq_gdc_realn.bam 204664693 BAM harmonized CPTAC3 2b1ee678-ae93-46e9-a63b-92da3e11efcd eb3e5e13647f85fec741c8d516c6bcc3 {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.RNA-Seq.chimeric.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.chimeric.gdc_realn.bam 50328154 BAM chimeric harmonized CPTAC3 647279e1-2412-4215-8d6f-62b675abba5f ebe3648b61fdacda4b0eb8a1aad507f4 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.RNA-Seq.chimeric.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.chimeric.gdc_realn.bam 376616615 BAM chimeric harmonized CPTAC3 dc49edb4-af31-417d-bc9a-b07a215a4691 434573771895a016e5748fd32b3b79fe {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.RNA-Seq.genomic.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.genomic.gdc_realn.bam 9697550628 BAM genomic harmonized CPTAC3 be495263-a550-422f-ae3a-3ceb66805261 1fb743faf076ad29e73501a49e86ef16 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.RNA-Seq.genomic.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.genomic.gdc_realn.bam 8903315406 BAM genomic harmonized CPTAC3 94246398-3920-432e-8a67-03abdc2cb038 b3aca8a63fe3a93e2635810aaba0fc2d {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.RNA-Seq.S18_L005_R1.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R1_001.fastq.gz 4405329523 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 0e991771-8719-4273-a2de-f665f2a9e1e2 5432568e50df19d1cc7bfcc5cc980818 {"aliquot_tag": "ALQ_7fc8a354", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.RNA-Seq.S18_L005_R2.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R2_001.fastq.gz 4711576990 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 44bb94a1-eebb-46a7-bb46-897f5c4f0c51 b11c36c07257123503a38c8c86e60b65 {"aliquot_tag": "ALQ_7fc8a354", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.RNA-Seq.S20_L007_R1.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R1_001.fastq.gz 3677865161 FASTQ S20_L007_R1 submitted_unaligned CPTAC3 64b860fe-c284-4da3-b37e-4843827fab04 1a6436cac17ad26910a392355a4e668e {"aliquot_tag": "ALQ_6b4ace1", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.RNA-Seq.S20_L007_R2.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R2_001.fastq.gz 3999895913 FASTQ S20_L007_R2 submitted_unaligned CPTAC3 4ba73c09-93fa-4b37-93f3-0035192a4bf0 bb2d9ad4a6c39a64bfc26555a21cf034 {"aliquot_tag": "ALQ_6b4ace1", "sample": "S20", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.RNA-Seq.transcriptome.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.transcriptome.gdc_realn.bam 11458092213 BAM transcriptome harmonized CPTAC3 20d8bb06-9551-4580-a835-3a9ca4366b9f e61de93d589ee267e012deee6f298795 {"aliquot_tag": "ALQ_7fc8a354", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.RNA-Seq.transcriptome.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.transcriptome.gdc_realn.bam 9129897901 BAM transcriptome harmonized CPTAC3 7ea0305f-20e8-4302-acd6-f6c6ac219456 436fd74c41bd50e35001d193c2bbd936 {"aliquot_tag": "ALQ_6b4ace1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.WGS.N C3N-03238 LUAD WGS blood_normal CPT0193990002 CPT0193990002.WholeGenome.RP-1303.bam 56392344919 BAM submitted_aligned CPTAC3 7278781c-533f-4144-8494-7f0f1a814aab b7ce8c10bd733207d94626be69085c56 {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03238.WGS.N.hg38 C3N-03238 LUAD WGS blood_normal CPT0193990002 72e2855c-e53f-494e-a1c7-98cfb3ae3d80_wgs_gdc_realn.bam 81996900039 BAM harmonized CPTAC3 f6d93cb6-f4f3-4485-a5e3-ee8007c76f74 f6275f14df3728cd5346baecfe7a7af1 {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03238.WGS.T C3N-03238 LUAD WGS tumor CPT0193870006 CPT0193870006.WholeGenome.RP-1303.bam 62284551098 BAM submitted_aligned CPTAC3 a975941c-0d94-45d9-9868-1df58fefc8b6 6ada8d46928b17325b70ffc03ee36d4c {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.WGS.T.hg38 C3N-03238 LUAD WGS tumor CPT0193870006 e8b4516b-888d-454a-b8c3-b13296ae60ed_wgs_gdc_realn.bam 91028129228 BAM harmonized CPTAC3 a4aa0076-1700-4c63-adeb-edb9e1f9c9fe 58785d0993a5122b2115ac317a37a388 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.WXS.A C3N-03238 LUAD WXS tissue_normal CPT0193900006 CPT0193900006.WholeExome.RP-1303.bam 18626942352 BAM submitted_aligned CPTAC3 7e35c976-a4f0-4dd2-a146-15ac301e7f37 5051d4ed42810f38dc7fa418d33d51fe {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.WXS.A.hg38 C3N-03238 LUAD WXS tissue_normal CPT0193900006 0a8903f4-c1bc-456a-ba0c-8d5ad24de495_wxs_gdc_realn.bam 25435066864 BAM harmonized CPTAC3 0d2f7637-fd0f-458c-9022-fac46d21886d 571e5d068e0a976e24d273f3963d1804 {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03238.WXS.N C3N-03238 LUAD WXS blood_normal CPT0193990002 CPT0193990002.WholeExome.RP-1303.bam 19449335163 BAM submitted_aligned CPTAC3 53e4c154-9615-430f-9704-03b784ba8e48 4b4034f59763364f7fd2923c611f1cf0 {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03238.WXS.N.hg38 C3N-03238 LUAD WXS blood_normal CPT0193990002 72e2855c-e53f-494e-a1c7-98cfb3ae3d80_wxs_gdc_realn.bam 26469353781 BAM harmonized CPTAC3 fd74d144-b936-4a19-a6a9-1af6ca61581c 45603cd8cc26d0e711708f34921bc57e {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03238.WXS.T C3N-03238 LUAD WXS tumor CPT0193870006 CPT0193870006.WholeExome.RP-1303.bam 24392518025 BAM submitted_aligned CPTAC3 95944a7f-efe5-42bb-b776-efd4b7ca575a 1de5d81a37d4844a89f81167d9b4b9f4 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03238.WXS.T.hg38 C3N-03238 LUAD WXS tumor CPT0193870006 e8b4516b-888d-454a-b8c3-b13296ae60ed_wxs_gdc_realn.bam 33384403381 BAM harmonized CPTAC3 7767472c-1d11-470f-be44-aa4f7b476daa 72c5b18d7587b30dc55b79220d9fe728 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03415.MethArray.Green.T C3N-03415 UCEC Methylation_Array tumor CPT0247910006 203561620091_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 cedbce9a-15c3-41f1-bc3f-97872fc2a4d0 2799d921c8d601c93388e5a61da3896a {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.MethArray.Red.T C3N-03415 UCEC Methylation_Array tumor CPT0247910006 203561620091_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 0d4d1d08-1478-4d72-8ef9-7b85805c8521 6f07a1cadff8616bc089922f67cc1544 {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.miRNA-Seq.S6_L001_R1.T C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L001_R1_001.unaln.bam 200579286 BAM S6_L001_R1 submitted_unaligned CPTAC3 5f4b4196-dd3c-4529-8489-3eec2b246fba b66b7c7986a86e08f39778cef7594285 {"aliquot_tag": "ALQ_146f87e3", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.miRNA-Seq.T.hg38 C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 fa94fe98-ee4e-4dac-b452-efb70d7351ff_mirnaseq_gdc_realn.bam 233648168 BAM harmonized CPTAC3 84bbb569-5365-453b-a52b-e7a9560f1e93 4c905997fb52fb1c1855262dab0a470b {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.chimeric.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.chimeric.gdc_realn.bam 26971950 BAM chimeric harmonized CPTAC3 647fea5e-5196-41ae-bf48-669d7a4dd9e1 c8703a5eaeec9069eb2ba387b23e055e {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.chimeric.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.chimeric.gdc_realn.bam 95731469 BAM chimeric harmonized CPTAC3 0669ab65-816b-4ef9-816a-9296b916ecf8 e526f9b49fc9e86321509cad09659a2f {"aliquot_tag": "ALQ_c96cefbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.genomic.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.genomic.gdc_realn.bam 7160960203 BAM genomic harmonized CPTAC3 367fbe82-ff1a-41d3-a266-4b77424bf906 8277fdefb4cb3ecb1d3431481adacc72 {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.genomic.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.genomic.gdc_realn.bam 5768285296 BAM genomic harmonized CPTAC3 17935cef-0311-4470-bcf7-a9bd066c6b51 1a3259306855eb90aee3e0d3f749c7e8 {"aliquot_tag": "ALQ_c96cefbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.S19_L005_R1.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R1_001.fastq.gz 3511526323 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 8c5d0868-cd21-475d-bbf7-92889d251ee3 8e4b13eb99f07896c07ea4274076658c {"aliquot_tag": "ALQ_146f87e3", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.S19_L005_R2.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R2_001.fastq.gz 3789275913 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 8e57165b-a410-4ef9-9157-b63dff799061 2f83f61f19504deef482bb0152139fd8 {"aliquot_tag": "ALQ_146f87e3", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.S46_R1.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R1_001.fastq.gz 3848372346 FASTQ S46_R1 submitted_unaligned CPTAC3 92308208-4da3-4147-8caa-e1678ca5301d 585607aa63e2ad0ceb5e0becb2d643a9 {"aliquot_tag": "ALQ_c96cefbb", "sample": "S46", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.S46_R2.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R2_001.fastq.gz 3841117633 FASTQ S46_R2 submitted_unaligned CPTAC3 a6e3cb93-7cd5-46d4-b6b7-d02cc86fc8e8 e991749bff7651b69bd53bc5d4bf5a23 {"aliquot_tag": "ALQ_c96cefbb", "sample": "S46", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.transcriptome.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.transcriptome.gdc_realn.bam 10603160436 BAM transcriptome harmonized CPTAC3 6609db36-0ffe-4172-8bc0-4d1ec9f3209f a9e99b1327e921b2b3f56204204b0c55 {"aliquot_tag": "ALQ_146f87e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.RNA-Seq.transcriptome.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.transcriptome.gdc_realn.bam 3506468536 BAM transcriptome harmonized CPTAC3 241be3bc-be8a-4277-9e5c-206bb2913cc2 3a59698d98c2b772fcd25e8f17c4a702 {"aliquot_tag": "ALQ_c96cefbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.WGS.N C3N-03415 UCEC WGS blood_normal CPT0247930002 CPT0247930002.WholeGenome.RP-1303.bam 59890855103 BAM submitted_aligned CPTAC3 db13787e-c756-4201-b2b0-915e4d7f82b4 c86632ecd0e3b5c8e83f14e5b97195d7 {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03415.WGS.N.hg38 C3N-03415 UCEC WGS blood_normal CPT0247930002 96e6a040-9758-4be9-998f-70ed0e638962_wgs_gdc_realn.bam 88191041833 BAM harmonized CPTAC3 7b6b6bc6-cb5c-40e7-a8a7-82ed6d17b6e6 72cdbfae0a031ba12211ea42e84889b1 {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03415.WGS.T C3N-03415 UCEC WGS tumor CPT0247910006 CPT0247910006.WholeGenome.RP-1303.bam 71300698411 BAM submitted_aligned CPTAC3 adf31d9d-aee4-4767-95aa-5ab0a3135d46 f5d823ab955da058e79b84fd2f454ec1 {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.WGS.T.hg38 C3N-03415 UCEC WGS tumor CPT0247910006 4c33c1da-4997-4a47-a91f-741356c209f8_wgs_gdc_realn.bam 103865784250 BAM harmonized CPTAC3 743993e4-da37-4d24-bbfe-3445ea7ec9ad 8d02fdf60a4c8d0a7efa260a237ff51e {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.WXS.N C3N-03415 UCEC WXS blood_normal CPT0247930002 CPT0247930002.WholeExome.RP-1303.bam 23820916809 BAM submitted_aligned CPTAC3 043af00b-d025-4806-8639-8ceb2675a400 7dd4e71b9d01e5dd906900864165ae5f {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03415.WXS.N.hg38 C3N-03415 UCEC WXS blood_normal CPT0247930002 96e6a040-9758-4be9-998f-70ed0e638962_wxs_gdc_realn.bam 33017023972 BAM harmonized CPTAC3 f72e5d8e-b065-4045-8e97-99ac9735b759 4e34ccb2de720e4bdcd9ce336cbaccce {"aliquot_tag": "ALQ_f97d0d0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03415.WXS.T C3N-03415 UCEC WXS tumor CPT0247910006 CPT0247910006.WholeExome.RP-1303.bam 24161542473 BAM submitted_aligned CPTAC3 fc53e1b9-d32c-4889-9698-6e1ea5bff77b b3f83d2c5b305f4136dd294cb66a95d1 {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03415.WXS.T.hg38 C3N-03415 UCEC WXS tumor CPT0247910006 4c33c1da-4997-4a47-a91f-741356c209f8_wxs_gdc_realn.bam 33247306409 BAM harmonized CPTAC3 6e578bcd-3695-4d10-9f3a-98cfc104b20d 7c1b1300d458df4d27ebdb5bf85df03d {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.MethArray.Green.T C3N-03417 UCEC Methylation_Array tumor CPT0247880006 203561450103_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0897ab96-f5f3-4be2-987b-1ca303fc7f2e 82b5fa05dce23de00f62ae8adf1038c2 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.MethArray.Red.T C3N-03417 UCEC Methylation_Array tumor CPT0247880006 203561450103_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 faaf9897-f510-4cbe-b7ae-c9483e45418f 128af30d7d5d53b68cbd37867a2800e5 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.miRNA-Seq.S5_L001_R1.T C3N-03417 UCEC miRNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACAGTG_S5_L001_R1_001.unaln.bam 185106814 BAM S5_L001_R1 submitted_unaligned CPTAC3 fc5d0359-5833-4936-9818-4a3ab1fc035e 270de8d8ae98901ccc6ad3bfa1df6e09 {"aliquot_tag": "ALQ_d2233637", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.miRNA-Seq.T.hg38 C3N-03417 UCEC miRNA-Seq tumor CPT0247880009 69932396-89bf-42df-b27e-35d0093d4108_mirnaseq_gdc_realn.bam 210131557 BAM harmonized CPTAC3 0e8fd441-a489-46c7-9159-6219c8f0dee6 b50b687ad0ff65e57cbaeff0a1c1a2bf {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.chimeric.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.chimeric.gdc_realn.bam 31066764 BAM chimeric harmonized CPTAC3 74191c15-3b0a-406a-8be6-4ea4f147ba73 67bef9d21182fa269d5ad99187b60a73 {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.chimeric.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.chimeric.gdc_realn.bam 35955255 BAM chimeric harmonized CPTAC3 b91666c8-e0dd-4e07-8287-f68da2ea8beb 758e6c27cc9dae34df9eeda62cc5a1ac {"aliquot_tag": "ALQ_f40cc60b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.genomic.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.genomic.gdc_realn.bam 8123581923 BAM genomic harmonized CPTAC3 c6bb5cff-c7c0-42d6-a5e6-dacc95aec80e 37cb4ede9c4ac1e15271263616b6ec40 {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.genomic.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.genomic.gdc_realn.bam 11578742427 BAM genomic harmonized CPTAC3 1c61ca8b-708d-4f65-9a45-81ca80dd397e 207a9670cfc096fe59eba99ebf8960da {"aliquot_tag": "ALQ_f40cc60b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.S16_L005_R1.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R1_001.fastq.gz 4070988146 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 2a4cc097-989c-4932-834d-3f9ce6bf34a4 38950fc3c8698827168d2734a2e2a601 {"aliquot_tag": "ALQ_d2233637", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.S16_L005_R2.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R2_001.fastq.gz 4464777277 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 e2da6754-1fa0-4355-a146-66fc98f6e99c 1a6bf8914cfdce4c9dabe499d8c59986 {"aliquot_tag": "ALQ_d2233637", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.S29_R1.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R1_001.fastq.gz 3999600997 FASTQ S29_R1 submitted_unaligned CPTAC3 533a2514-6c8d-4800-9c34-7956f713b403 66a4ff7f901ca444b0b29d8d6db1875f {"aliquot_tag": "ALQ_f40cc60b", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.S29_R2.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R2_001.fastq.gz 3834711249 FASTQ S29_R2 submitted_unaligned CPTAC3 5584f042-9cdb-4a5f-840c-7485ffb152de 5af6c21774e04a0b7c7a5b005a178564 {"aliquot_tag": "ALQ_f40cc60b", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.transcriptome.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.transcriptome.gdc_realn.bam 13820352739 BAM transcriptome harmonized CPTAC3 313e3f81-97b6-4642-bbb5-9a5c241204cc dcb2115ed0f3bc01758c7561b029b15f {"aliquot_tag": "ALQ_d2233637", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.RNA-Seq.transcriptome.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.transcriptome.gdc_realn.bam 4373245971 BAM transcriptome harmonized CPTAC3 24fc8872-a93b-4ea8-833c-753facb8ba07 f47553b7a4ca0c6d0cc2dfc5488af714 {"aliquot_tag": "ALQ_f40cc60b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.WGS.N C3N-03417 UCEC WGS blood_normal CPT0247900002 CPT0247900002.WholeGenome.RP-1303.bam 66344728708 BAM submitted_aligned CPTAC3 cd8241ea-ab6d-46fb-a980-1d025846bbfb 91f42349b7d48ae827bc01a34559b8cb {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03417.WGS.N.hg38 C3N-03417 UCEC WGS blood_normal CPT0247900002 af45b7d1-1622-428a-8d4b-807203076c65_wgs_gdc_realn.bam 97103645547 BAM harmonized CPTAC3 e222d9bb-8c36-4cf8-b3e0-a30723177dd6 616d54a77b992773f092ad5758fde43e {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03417.WGS.T C3N-03417 UCEC WGS tumor CPT0247880006 CPT0247880006.WholeGenome.RP-1303.bam 77961109286 BAM submitted_aligned CPTAC3 41ecf88f-b275-4e39-a6ba-52a7a8cc0c04 e881120557bb928854318997d9ef32e6 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.WGS.T.hg38 C3N-03417 UCEC WGS tumor CPT0247880006 262ce6f3-31fc-452e-929a-7787d1eb9b9d_wgs_gdc_realn.bam 114634757537 BAM harmonized CPTAC3 2515737f-f53d-4793-b276-f90008d741b3 df40234d75aabd397a05cdbd6096cb8f {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.WXS.N C3N-03417 UCEC WXS blood_normal CPT0247900002 CPT0247900002.WholeExome.RP-1303.bam 31406698312 BAM submitted_aligned CPTAC3 14fd2eed-61bf-48a7-a112-fb975a497ffe f84558a9fdd1310d77362b241676317f {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03417.WXS.N.hg38 C3N-03417 UCEC WXS blood_normal CPT0247900002 af45b7d1-1622-428a-8d4b-807203076c65_wxs_gdc_realn.bam 42840093354 BAM harmonized CPTAC3 d758d13b-d2d6-4246-87fa-2119fcecfa16 7b184fb4852e515e5a0e1eb1e878ef7e {"aliquot_tag": "ALQ_bedd77db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03417.WXS.T C3N-03417 UCEC WXS tumor CPT0247880006 CPT0247880006.WholeExome.RP-1303.bam 26866683799 BAM submitted_aligned CPTAC3 7b09675d-fb51-4a35-afbd-871c780ea0c5 5a458abde8b2a93d9e3506ebabd557a6 {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03417.WXS.T.hg38 C3N-03417 UCEC WXS tumor CPT0247880006 262ce6f3-31fc-452e-929a-7787d1eb9b9d_wxs_gdc_realn.bam 37833355144 BAM harmonized CPTAC3 c6715583-6f51-4272-bed3-2824a056852c 0de1e57bcb6e963530ee82bd82f287de {"aliquot_tag": "ALQ_429c2ba6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03420.MethArray.Green.A C3N-03420 LUAD Methylation_Array tissue_normal CPT0187440006 203220070157_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9f8ae8fd-37cf-47cd-b62c-40857dcdaf3e 4c3baa961ceca94a4b5faf4f88be2cd0 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.MethArray.Green.T C3N-03420 LUAD Methylation_Array tumor CPT0187430006 203219650202_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 be432ae6-7748-4b98-a113-ae73c34892ce c760e9bc812842bcd9b92b90a679d8d1 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.MethArray.Red.A C3N-03420 LUAD Methylation_Array tissue_normal CPT0187440006 203220070157_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 27e3deda-2811-42ba-8ed7-72ab5ff5df06 41b00b8c51a1b840d3a826f51ced79a8 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.MethArray.Red.T C3N-03420 LUAD Methylation_Array tumor CPT0187430006 203219650202_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 e0209264-0400-43fb-b83e-f6ba28fd924d 24965b67a74e87f81dc46083fca67268 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.miRNA-Seq.A.hg38 C3N-03420 LUAD miRNA-Seq tissue_normal CPT0187440009 aeb86433-b421-4a57-b600-6fdcdad2b658_mirnaseq_gdc_realn.bam 273609668 BAM harmonized CPTAC3 f7bc31a9-3dce-4715-9229-9ec24398ba4c 35f071058efd77204e284bece1269787 {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.miRNA-Seq.S11_L006_R1.A C3N-03420 LUAD miRNA-Seq tissue_normal CPT0187440009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAGCTT_S11_L006_R1_001.unaln.bam 247835574 BAM S11_L006_R1 submitted_unaligned CPTAC3 c94b034a-85ff-44a9-92c2-cb384dfb5fce 96e1a4f1a0eef40ed416b9a7cde9b63c {"aliquot_tag": "ALQ_e3332c7", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.miRNA-Seq.S48_L002_R1.T C3N-03420 LUAD miRNA-Seq tumor CPT0187430009 190206_UNC31-K00269_0191_AH2WY5BBXY_GAGTGG_S48_L002_R1_001.unaln.bam 187990145 BAM S48_L002_R1 submitted_unaligned CPTAC3 8cf62662-68ee-4dd5-a4ae-62c86d9c09ce 0cf5f0e04ea738ba2715b859b309d3f6 {"aliquot_tag": "ALQ_bc13eed7", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.miRNA-Seq.T.hg38 C3N-03420 LUAD miRNA-Seq tumor CPT0187430009 8113f521-a29c-40af-bc97-d04ee41ab116_mirnaseq_gdc_realn.bam 210031123 BAM harmonized CPTAC3 2a412e46-2269-4360-8f29-487a4bd002fc 07d40f5e5251307b7ef65f52d53c3635 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.RNA-Seq.chimeric.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.chimeric.gdc_realn.bam 58073273 BAM chimeric harmonized CPTAC3 7b75797f-eaab-4775-bc39-a37149fbbe48 3f69f36412cac3635f30a609b0d6370f {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.RNA-Seq.chimeric.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.chimeric.gdc_realn.bam 91327574 BAM chimeric harmonized CPTAC3 af760099-e500-4723-a48c-1f2c377b93ca f28182f5151ccdb7b818a54d72b6f1d9 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.RNA-Seq.genomic.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.genomic.gdc_realn.bam 9961804172 BAM genomic harmonized CPTAC3 7e10a9bc-3755-4b87-bf98-7e268da6bb53 e62679d5f8b8e07b2bc0073dffc2afa5 {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.RNA-Seq.genomic.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.genomic.gdc_realn.bam 9239368558 BAM genomic harmonized CPTAC3 ed97d2f8-f92e-4500-b192-a444e5596fd5 0538e21c6cb7707acb6559028274fea3 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.RNA-Seq.S15_L004_R1.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R1_001.fastq.gz 4501646774 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 9d56ac18-6cf8-4a90-8d41-7854c93a5ff0 21d378e9fc0e38e8c45350076e4d0d6f {"aliquot_tag": "ALQ_e3332c7", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.RNA-Seq.S15_L004_R2.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R2_001.fastq.gz 4934314819 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 7b211823-2dd4-427b-b0c0-64a491ea091f ac7cd1ab15e66584f58917dbd13d59d4 {"aliquot_tag": "ALQ_e3332c7", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.RNA-Seq.S7_L007_R1.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R1_001.fastq.gz 4197313421 FASTQ S7_L007_R1 submitted_unaligned CPTAC3 d344e5c3-d58a-435c-9b94-6e73ab8c27e7 0cce3f6765c7cc93e36e50be88a2d95a {"aliquot_tag": "ALQ_bc13eed7", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.RNA-Seq.S7_L007_R2.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R2_001.fastq.gz 4532118716 FASTQ S7_L007_R2 submitted_unaligned CPTAC3 5b85fc15-b362-4f45-a1c6-7d5d47d2ed3f 139ba85d1bee264e293f21a3b0ab6a26 {"aliquot_tag": "ALQ_bc13eed7", "sample": "S7", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.RNA-Seq.transcriptome.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.transcriptome.gdc_realn.bam 10629187415 BAM transcriptome harmonized CPTAC3 da6e37a1-dfdd-4b18-aa6c-67d8709b9a0f ac16abf8856324175d5d5bbe8b558b50 {"aliquot_tag": "ALQ_e3332c7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.RNA-Seq.transcriptome.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.transcriptome.gdc_realn.bam 8191505195 BAM transcriptome harmonized CPTAC3 1185680d-c0ed-4a3d-acb9-2c33b2bcf9dd 88da551fcb000173fd832587a4c94426 {"aliquot_tag": "ALQ_bc13eed7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.WGS.N C3N-03420 LUAD WGS blood_normal CPT0187480002 CPT0187480002.WholeGenome.RP-1303.bam 58848048353 BAM submitted_aligned CPTAC3 1843c367-11ff-41bc-be14-f70a13aa1224 e512f1d01104037d01fd6309a1c170c9 {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03420.WGS.N.hg38 C3N-03420 LUAD WGS blood_normal CPT0187480002 12e9b5ca-92a6-44bb-8690-98dbfde28bda_wgs_gdc_realn.bam 84727109368 BAM harmonized CPTAC3 1da5a6bd-2abc-4497-b00b-56113b9bbbce a41eef8707b4fac80c18f3db1e52efd5 {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03420.WGS.T C3N-03420 LUAD WGS tumor CPT0187430006 CPT0187430006.WholeGenome.RP-1303.bam 69333999031 BAM submitted_aligned CPTAC3 1ed2b6e5-7c98-4796-8a46-9dc360bfe811 cee20f0d19ccded829e13d079666dfe5 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.WGS.T.hg38 C3N-03420 LUAD WGS tumor CPT0187430006 2d6e8da1-ae06-469c-9c2b-9671e226351d_wgs_gdc_realn.bam 99360174916 BAM harmonized CPTAC3 49984296-ca82-423c-b56c-b21d86cf99be 4063167b00e6a3e82cded596ffdcbaca {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.WXS.A C3N-03420 LUAD WXS tissue_normal CPT0187440006 CPT0187440006.WholeExome.RP-1303.bam 25002744430 BAM submitted_aligned CPTAC3 f243406d-be01-4974-9ed6-5d8614414d5c 0d04131b5ab49ec07e9e5d8e64249219 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.WXS.A.hg38 C3N-03420 LUAD WXS tissue_normal CPT0187440006 fca7b9ff-b596-4019-ba64-943653002e63_wxs_gdc_realn.bam 34500001887 BAM harmonized CPTAC3 5d685c1e-c98e-4bd5-b7b2-f5248f4a7514 8058777604c1130a3aacba669e9ca431 {"aliquot_tag": "ALQ_9e8c2f56", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03420.WXS.N C3N-03420 LUAD WXS blood_normal CPT0187480002 CPT0187480002.WholeExome.RP-1303.bam 22925850254 BAM submitted_aligned CPTAC3 e2577937-a668-4126-b036-5ac5971653c1 4e9a37119b8a7e59cfd65caebe1b380f {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03420.WXS.N.hg38 C3N-03420 LUAD WXS blood_normal CPT0187480002 12e9b5ca-92a6-44bb-8690-98dbfde28bda_wxs_gdc_realn.bam 31555491019 BAM harmonized CPTAC3 209e6c70-967b-4934-b69b-097f395e9759 b7097d128a35ea35cb51f0d00e0bccdd {"aliquot_tag": "ALQ_5c11064e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03420.WXS.T C3N-03420 LUAD WXS tumor CPT0187430006 CPT0187430006.WholeExome.RP-1303.bam 21709902521 BAM submitted_aligned CPTAC3 c86eaac2-2ba7-4e12-8a51-2e3aaa3ee907 eb4a3faef5c53529a95944cb921b9f35 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03420.WXS.T.hg38 C3N-03420 LUAD WXS tumor CPT0187430006 2d6e8da1-ae06-469c-9c2b-9671e226351d_wxs_gdc_realn.bam 29913796611 BAM harmonized CPTAC3 7c856009-69c7-453d-ac55-e9a6b9e46451 e6c0b4b355ae6df934ee5464dd62ac95 {"aliquot_tag": "ALQ_2cacf346", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.MethArray.Green.A C3N-03424 LSCC Methylation_Array tissue_normal CPT0245790006 203281980258_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 437d9762-529c-418a-97df-a8d19a567523 a0c5bc76171ab047de00504c43d7e764 {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.MethArray.Green.T C3N-03424 LSCC Methylation_Array tumor CPT0245780006 203219650218_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9a8bcb39-3ced-408c-82b4-75e0ce2ed164 93976aa56180b34409ae9257337182e1 {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.MethArray.Red.A C3N-03424 LSCC Methylation_Array tissue_normal CPT0245790006 203281980258_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 99a0b654-63fb-4d37-8dbb-d7074f7eb50a 79a2b2fc3cf45534d91dbd1c4ad006fd {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.MethArray.Red.T C3N-03424 LSCC Methylation_Array tumor CPT0245780006 203219650218_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 ff21c816-9237-4932-9f35-4f4aeab4992c 0535ebc02e144125c53708f90543a53f {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.miRNA-Seq.A.hg38 C3N-03424 LSCC miRNA-Seq tissue_normal CPT0245790009 a71afc85-7aad-4d12-9253-04b7b46a4610_mirnaseq_gdc_realn.bam 308810851 BAM harmonized CPTAC3 7c85594d-ea51-40c8-a42e-c75be1b21b2b a91ab21e9731aa0efe10c93eecaae236 {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.miRNA-Seq.S5_L007_R1.T C3N-03424 LSCC miRNA-Seq tumor CPT0245780009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L007_R1_001.unaln.bam 172221726 BAM S5_L007_R1 submitted_unaligned CPTAC3 6b6bfefb-dca5-4f50-834a-d9a2058c508d 86deaf3e24ff09890468eef59e87518f {"aliquot_tag": "ALQ_b4ea95cb", "sample": "S5", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.miRNA-Seq.S7_L007_R1.A C3N-03424 LSCC miRNA-Seq tissue_normal CPT0245790009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L007_R1_001.unaln.bam 275867035 BAM S7_L007_R1 submitted_unaligned CPTAC3 f04d350c-5edd-4bf8-9796-78f37cfba163 55f279c2dd54eef38dcd45cc1b5b47bf {"aliquot_tag": "ALQ_898abc7b", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.miRNA-Seq.T.hg38 C3N-03424 LSCC miRNA-Seq tumor CPT0245780009 cd301c86-5942-426c-9a18-d82324c3b785_mirnaseq_gdc_realn.bam 192348732 BAM harmonized CPTAC3 732d8e9b-6878-48ac-83ff-c030b1034aa4 11b5c72e2fed6d5af34a92306a9e3c3a {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.RNA-Seq.chimeric.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.chimeric.gdc_realn.bam 62521078 BAM chimeric harmonized CPTAC3 53190851-b5c4-4137-918a-26cd18d89749 dc38548e79a55dccfa2ec81375d95293 {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.RNA-Seq.chimeric.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.chimeric.gdc_realn.bam 67971795 BAM chimeric harmonized CPTAC3 b11f2e9f-5bdb-4eee-bf9a-6b48046c6c55 7d1678cb4a72761e5d32d98093eaf73e {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.RNA-Seq.genomic.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.genomic.gdc_realn.bam 9226318348 BAM genomic harmonized CPTAC3 e19fe19d-d336-4997-b004-7e2e4803904f 03ebad9ac22466ea2a123ef1bbca922e {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.RNA-Seq.genomic.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.genomic.gdc_realn.bam 7997204055 BAM genomic harmonized CPTAC3 686f3b72-0d31-4787-9911-85be92d01ee5 a14218de63b803702b0ec262d10e5a8a {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.RNA-Seq.S4_L004_R1.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R1_001.fastq.gz 3703824715 FASTQ S4_L004_R1 submitted_unaligned CPTAC3 fb14510e-355d-4f8a-b0ac-a0611c639e60 bed63612dfac9d80891191e80c743816 {"aliquot_tag": "ALQ_b4ea95cb", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.RNA-Seq.S4_L004_R2.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R2_001.fastq.gz 3956937706 FASTQ S4_L004_R2 submitted_unaligned CPTAC3 932af614-1b0a-4a9a-8008-bba4abc8646f 3a1732316dffe5dba71e5bc001613928 {"aliquot_tag": "ALQ_b4ea95cb", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.RNA-Seq.S6_L003_R1.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R1_001.fastq.gz 4281360338 FASTQ S6_L003_R1 submitted_unaligned CPTAC3 08126d76-9242-4201-882a-4d88b862acbf 04f229308b5bb437e49606daa16b62ae {"aliquot_tag": "ALQ_898abc7b", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.RNA-Seq.S6_L003_R2.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R2_001.fastq.gz 4643006421 FASTQ S6_L003_R2 submitted_unaligned CPTAC3 6aeaf104-1e4e-4d23-a1a9-0121601c8035 4aaeafa70883e1d6e4cdf89353bc22b4 {"aliquot_tag": "ALQ_898abc7b", "sample": "S6", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.RNA-Seq.transcriptome.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.transcriptome.gdc_realn.bam 11245597389 BAM transcriptome harmonized CPTAC3 f37dfcaa-4881-460e-b1fe-7be9506c68bb 1f3c2d3fca3846c291a210abd84d180c {"aliquot_tag": "ALQ_898abc7b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.RNA-Seq.transcriptome.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.transcriptome.gdc_realn.bam 10302121848 BAM transcriptome harmonized CPTAC3 c4b94028-6642-4471-a3b4-6fb0a12904fe def770205349ae607797506889572e62 {"aliquot_tag": "ALQ_b4ea95cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.WGS.N C3N-03424 LSCC WGS blood_normal CPT0245820002 CPT0245820002.WholeGenome.RP-1303.bam 62890909963 BAM submitted_aligned CPTAC3 d19a73fc-1fa3-43e3-ba49-67a5ef252228 3d96cb74a5e956f1184907a1a40102aa {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03424.WGS.N.hg38 C3N-03424 LSCC WGS blood_normal CPT0245820002 753658b1-7496-42f3-8340-18be0c34469e_wgs_gdc_realn.bam 91935283813 BAM harmonized CPTAC3 7e37d12d-79c3-4f73-9f13-fe7eded36fef 2701302d39609554de8f2311e74de4b8 {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03424.WGS.T C3N-03424 LSCC WGS tumor CPT0245780006 CPT0245780006.WholeGenome.RP-1303.bam 68217504884 BAM submitted_aligned CPTAC3 2bdab49f-c65d-44a7-86c7-13b22125df42 c4d78fd9a4f0071fe3b63baa7f5a3d3e {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.WGS.T.hg38 C3N-03424 LSCC WGS tumor CPT0245780006 8feea2f2-9e23-41cf-81c1-e7226f4908b9_wgs_gdc_realn.bam 101113720811 BAM harmonized CPTAC3 ea90a96c-0137-41da-94d4-e7e7a79700c7 e9db2564cc9ab145410f522b0f911207 {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.WXS.A C3N-03424 LSCC WXS tissue_normal CPT0245790006 CPT0245790006.WholeExome.RP-1303.bam 23346276876 BAM submitted_aligned CPTAC3 7f18e5bc-fc68-4985-bbf8-07dd992d900a cd925932da0190408f1bded20fbdce25 {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.WXS.A.hg38 C3N-03424 LSCC WXS tissue_normal CPT0245790006 b4c167b0-adb8-49c4-905e-8d2971f67fc3_wxs_gdc_realn.bam 32182231762 BAM harmonized CPTAC3 b1781768-b5b7-4784-ab32-9bca6fa0c9d7 8a82339a6f47db5a42306dc5f910fad8 {"aliquot_tag": "ALQ_1935a1ea", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03424.WXS.N C3N-03424 LSCC WXS blood_normal CPT0245820002 CPT0245820002.WholeExome.RP-1303.bam 22851946244 BAM submitted_aligned CPTAC3 ff2f41d8-5091-4237-ba17-690e2f0fc78d fd2437175d62546fe6be2768e83d3f40 {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03424.WXS.N.hg38 C3N-03424 LSCC WXS blood_normal CPT0245820002 753658b1-7496-42f3-8340-18be0c34469e_wxs_gdc_realn.bam 31899295813 BAM harmonized CPTAC3 2abe6156-f924-4cfe-b73a-fa8547091add e952a10fa0a20bcc421b238ea78b96ef {"aliquot_tag": "ALQ_98dee637", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03424.WXS.T C3N-03424 LSCC WXS tumor CPT0245780006 CPT0245780006.WholeExome.RP-1303.bam 18697832508 BAM submitted_aligned CPTAC3 ac29251b-9d17-4c51-a91f-8e006a82609d 0722a33d0f226e4d6df8cf2965fbf0f2 {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03424.WXS.T.hg38 C3N-03424 LSCC WXS tumor CPT0245780006 8feea2f2-9e23-41cf-81c1-e7226f4908b9_wxs_gdc_realn.bam 26061941278 BAM harmonized CPTAC3 63692549-396c-474a-8b91-c2ac97fcf75f 299e8a1a49293cc0d9aed00dc0797ecb {"aliquot_tag": "ALQ_2455885a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.MethArray.Green.A C3N-03425 LSCC Methylation_Array tissue_normal CPT0245840006 203219650098_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 132b49f7-0973-41e6-b2a7-6a347a3d1c7a 823e9d980079c9362b30fe7bafc27bda {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.MethArray.Green.T C3N-03425 LSCC Methylation_Array tumor CPT0245830006 203220070217_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 35f978b8-3e25-4c4d-8986-52e038570bd7 60fae06a2e66477d21336063a489aa72 {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.MethArray.Red.A C3N-03425 LSCC Methylation_Array tissue_normal CPT0245840006 203219650098_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 32ff19c3-057b-4f78-8c9f-74ba3b268315 ec52b95bdf7d6634ec23c1131d9f3cfe {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.MethArray.Red.T C3N-03425 LSCC Methylation_Array tumor CPT0245830006 203220070217_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 e513f128-b003-4d62-ae60-b3c00e66926c 89e954aa59196929e4c35cf267896fbe {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.miRNA-Seq.A.hg38 C3N-03425 LSCC miRNA-Seq tissue_normal CPT0245840009 34c30c8b-4c4a-478b-b225-270ba7e68113_mirnaseq_gdc_realn.bam 264034990 BAM harmonized CPTAC3 426f925e-1c8e-4beb-8f2b-af57200486fd 590a2981384c0e76831fef52d22e57ef {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.miRNA-Seq.S8_L007_R1.T C3N-03425 LSCC miRNA-Seq tumor CPT0245830009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L007_R1_001.unaln.bam 214708882 BAM S8_L007_R1 submitted_unaligned CPTAC3 217d57c7-c87f-4442-a204-b7844b665a69 19d6b1d80ed5b20e36ecd6091f5b0369 {"aliquot_tag": "ALQ_326c160f", "sample": "S8", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.miRNA-Seq.S9_L007_R1.A C3N-03425 LSCC miRNA-Seq tissue_normal CPT0245840009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L007_R1_001.unaln.bam 232915820 BAM S9_L007_R1 submitted_unaligned CPTAC3 4f26e62b-2bcf-4e08-8e9f-d2955b78a910 a044611e65f73475b3154d761995d7a0 {"aliquot_tag": "ALQ_804cca1f", "sample": "S9", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.miRNA-Seq.T.hg38 C3N-03425 LSCC miRNA-Seq tumor CPT0245830009 eebfb1f2-0cef-47d9-88dd-17bd1cecd292_mirnaseq_gdc_realn.bam 238780158 BAM harmonized CPTAC3 2545207f-2614-4bf3-897f-cc5ca9c5645e f2275f932530c2ec07ae458a9b56f19a {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.RNA-Seq.chimeric.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.chimeric.gdc_realn.bam 56348693 BAM chimeric harmonized CPTAC3 cbdd1546-29c3-4ec4-b196-9f74607da8c3 2a63c71d5c1ba571c0387eb829f7216d {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.RNA-Seq.chimeric.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.chimeric.gdc_realn.bam 36975905 BAM chimeric harmonized CPTAC3 7f4c727e-4979-47d5-9d30-c1fc782cbe9c db6bf86018373c2f63128f019a5a0325 {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.RNA-Seq.genomic.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.genomic.gdc_realn.bam 8045797073 BAM genomic harmonized CPTAC3 5f15563f-c3b5-4aa0-ba15-e1f2a18e0c26 922ff2fd7b3e80ba8a37c7cf82e0b615 {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.RNA-Seq.genomic.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.genomic.gdc_realn.bam 7460685409 BAM genomic harmonized CPTAC3 bf087956-2bb7-4e97-ae61-a097b98e77c2 42a7fe293aff1bb7bfe974037aef91a7 {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.RNA-Seq.S7_L003_R1.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R1_001.fastq.gz 3927624892 FASTQ S7_L003_R1 submitted_unaligned CPTAC3 6dc9b0b2-01c2-4f73-8beb-cfb794f6b555 2c756073b78c7635bdf492e7605036d8 {"aliquot_tag": "ALQ_804cca1f", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.RNA-Seq.S7_L003_R2.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R2_001.fastq.gz 4257501212 FASTQ S7_L003_R2 submitted_unaligned CPTAC3 3ca827ca-cee9-4417-b20c-8e537eade377 c56207ea9071bbabd39d20798fb96eb0 {"aliquot_tag": "ALQ_804cca1f", "sample": "S7", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.RNA-Seq.S8_L003_R1.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R1_001.fastq.gz 3551251612 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 72ed9436-a381-4055-b785-68a9352ab86e c173e91723f83208aa731dd7af10c338 {"aliquot_tag": "ALQ_326c160f", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.RNA-Seq.S8_L003_R2.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R2_001.fastq.gz 3786048537 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 b43f757a-58b7-4b23-9f86-d485ba357aa1 bd00c1f01e506b18a881ee6db6941632 {"aliquot_tag": "ALQ_326c160f", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.RNA-Seq.transcriptome.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.transcriptome.gdc_realn.bam 10038441569 BAM transcriptome harmonized CPTAC3 798f70a2-0278-4a9a-9043-f5f8daea89e3 1ced025c0a50c72f7355fdef17db084b {"aliquot_tag": "ALQ_804cca1f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.RNA-Seq.transcriptome.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.transcriptome.gdc_realn.bam 9059953874 BAM transcriptome harmonized CPTAC3 f059512f-ce9c-4c00-ab16-1febfddeebcf c4966c6434731739a15a4b29cd9bd071 {"aliquot_tag": "ALQ_326c160f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.WGS.N C3N-03425 LSCC WGS blood_normal CPT0245870002 CPT0245870002.WholeGenome.RP-1303.bam 64709659788 BAM submitted_aligned CPTAC3 8f9bb9b0-dcf5-493e-8a5b-d965134f2ec8 c7e6b70668e9061aff04c44b6b626166 {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03425.WGS.N.hg38 C3N-03425 LSCC WGS blood_normal CPT0245870002 666767b5-d283-426e-ac0c-58d625bfbe52_wgs_gdc_realn.bam 95695120007 BAM harmonized CPTAC3 38ef9d92-ef9e-4137-8fd3-3476b37c258e b9f1b39a60e770c1b0b68bca6a538490 {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03425.WGS.T C3N-03425 LSCC WGS tumor CPT0245830006 CPT0245830006.WholeGenome.RP-1303.bam 54590893794 BAM submitted_aligned CPTAC3 ff3a85e7-d53e-4dbb-a474-badaa1f00c54 426aa4463635f6e795728bef6364d5de {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.WGS.T.hg38 C3N-03425 LSCC WGS tumor CPT0245830006 e01db198-b767-4cd5-8f06-2fd55989595b_wgs_gdc_realn.bam 80153819684 BAM harmonized CPTAC3 84e09932-2803-4c90-abf8-6d5c33f2eb5d fa78ee0aa03bed28ba8162641c5b4e7c {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.WXS.A C3N-03425 LSCC WXS tissue_normal CPT0245840006 CPT0245840006.WholeExome.RP-1303.bam 24267946875 BAM submitted_aligned CPTAC3 219e824d-c5dd-4591-90a8-8de6a7d31bb4 7da43ed975d984584aa64da9e17beb9e {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.WXS.A.hg38 C3N-03425 LSCC WXS tissue_normal CPT0245840006 7d5d1988-752c-4480-8790-63255dbe3e89_wxs_gdc_realn.bam 33255663972 BAM harmonized CPTAC3 2d0aa975-efb4-40d9-9207-0c4964f64c32 2115ee0afb208f943ea323a419de6982 {"aliquot_tag": "ALQ_10f3d78e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03425.WXS.N C3N-03425 LSCC WXS blood_normal CPT0245870002 CPT0245870002.WholeExome.RP-1303.bam 18886574711 BAM submitted_aligned CPTAC3 e57075d7-ab26-4807-b5f8-d7f8615b2c87 c4f2b9ed3c7f45a67bca22bf3a91a16a {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03425.WXS.N.hg38 C3N-03425 LSCC WXS blood_normal CPT0245870002 666767b5-d283-426e-ac0c-58d625bfbe52_wxs_gdc_realn.bam 25964386290 BAM harmonized CPTAC3 fd90d03c-3c87-4517-9a20-fffdd6714e27 ebc01ce27dd72da068f5dbd890e65886 {"aliquot_tag": "ALQ_503e6947", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03425.WXS.T C3N-03425 LSCC WXS tumor CPT0245830006 CPT0245830006.WholeExome.RP-1303.bam 24852470918 BAM submitted_aligned CPTAC3 e87eae7f-c6b5-4d39-b26f-9d9fd9f4f049 b4c0b509167136715ccd47241dd9ecc0 {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03425.WXS.T.hg38 C3N-03425 LSCC WXS tumor CPT0245830006 e01db198-b767-4cd5-8f06-2fd55989595b_wxs_gdc_realn.bam 34402683446 BAM harmonized CPTAC3 4fe08085-9e1c-4993-8272-3b0acabdac39 fc6eb4821b55ef0473ced156c29ec7da {"aliquot_tag": "ALQ_a2d30b9e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.MethArray.Green.T C3N-03426 PDA Methylation_Array tumor CPT0226600007 203561450106_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 735977c9-bf8d-42ea-add9-65270b63bec5 8ae2b8070c7e8f74e1609a6292d690bd {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.MethArray.Red.T C3N-03426 PDA Methylation_Array tumor CPT0226600007 203561450106_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 a1a5c53e-1130-468b-b053-07148633b996 0cbeb5e8a7f5e9505bf14bc5a921ca7f {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.miRNA-Seq.S35_L004_R1.T C3N-03426 PDA miRNA-Seq tumor CPT0226600010 190813_UNC32-K00270_0196_AH5MCWBBXY_GCCAAT_S35_L004_R1_001.unaln.bam 327467507 BAM S35_L004_R1 submitted_unaligned CPTAC3 9af93e9c-37e2-47a8-9fec-0223d659a78c f2e6c1e8a2473f6538985312f1a6355b {"aliquot_tag": "ALQ_d8869750", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.miRNA-Seq.T.hg38 C3N-03426 PDA miRNA-Seq tumor CPT0226600010 b38c77d7-c235-44cf-925b-b86e74077cae_mirnaseq_gdc_realn.bam 381428449 BAM harmonized CPTAC3 de921739-5ea5-43a2-8bad-f02b12cd5306 7099362bff7a9c0a98f744adb8abd0a3 {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.RNA-Seq.chimeric.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.chimeric.gdc_realn.bam 94105415 BAM chimeric harmonized CPTAC3 e63d625a-2acd-4027-a8ae-ae1912542a7c dee8d7a1fc2b5f9fa1106dc6a8c09f98 {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.RNA-Seq.genomic.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.genomic.gdc_realn.bam 7909506972 BAM genomic harmonized CPTAC3 1d3fc52f-2cde-414f-97e7-5175d7699fb6 89d988c5573c5639de58b0bb845cdeaf {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.RNA-Seq.S2_L001_R1.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 2605705670 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 10689c80-11c6-4f26-b1bc-4bc6d9028ab8 354d097c8abc62af67c5072e64a3eb3d {"aliquot_tag": "ALQ_d8869750", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.RNA-Seq.S2_L001_R2.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 2581212895 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 addcd074-4774-4cdf-b543-b7d8cbefb8f7 0f56eebb9a31a101770ff4b6fb87869b {"aliquot_tag": "ALQ_d8869750", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.RNA-Seq.transcriptome.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.transcriptome.gdc_realn.bam 5790967635 BAM transcriptome harmonized CPTAC3 08ce4983-1839-4e45-84b7-2711b1a3396f 8bccc9266dfd947801ba7205dddaa830 {"aliquot_tag": "ALQ_d8869750", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.WGS.N C3N-03426 PDA WGS blood_normal CPT0226640002 CPT0226640002.WholeGenome.RP-1303.bam 56099262908 BAM submitted_aligned CPTAC3 1db21dd5-0c3e-4ff5-945f-7a56bd17e0c6 1a1ca2ee375e12fe3bb066b4b607d357 {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03426.WGS.N.hg38 C3N-03426 PDA WGS blood_normal CPT0226640002 e1401e98-8f02-415f-a1bf-b72c4bbcac6d_wgs_gdc_realn.bam 83027741213 BAM harmonized CPTAC3 c69c0d6e-891a-4d2b-9969-2983e1159e26 44ec8a0587a51d27d92c01562daedd91 {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03426.WGS.T C3N-03426 PDA WGS tumor CPT0226600007 CPT0226600007.WholeGenome.RP-1303.bam 118306756528 BAM submitted_aligned CPTAC3 4baef431-e025-4999-8173-cdc2613e96fe 1b59aa79722b5a381ab7d2690afff4b5 {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.WGS.T.hg38 C3N-03426 PDA WGS tumor CPT0226600007 c426ad7d-ed66-442f-a1ce-2695de7d1033_wgs_gdc_realn.bam 172306829048 BAM harmonized CPTAC3 d4efe0ee-2aa5-488c-afe1-766c414d1f23 72f4701f504e6f32fc4fa4033657d9a8 {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.WXS.N C3N-03426 PDA WXS blood_normal CPT0226640002 CPT0226640002.WholeExome.RP-1303.bam 22655196026 BAM submitted_aligned CPTAC3 0ff1aa6d-568b-43e5-ada4-ae924e94ec12 219225a07f277ee63c9579dee9c4ed6d {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03426.WXS.N.hg38 C3N-03426 PDA WXS blood_normal CPT0226640002 e1401e98-8f02-415f-a1bf-b72c4bbcac6d_wxs_gdc_realn.bam 31571787936 BAM harmonized CPTAC3 96da296d-a9f1-40ae-b709-f94403b214d2 941442e2f163685868c6ec567478be8d {"aliquot_tag": "ALQ_da1361fd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03426.WXS.T C3N-03426 PDA WXS tumor CPT0226600007 CPT0226600007.WholeExome.RP-1303.bam 56909699039 BAM submitted_aligned CPTAC3 8188d852-11b7-459e-bc1c-f7f7bb1df566 934bbab145e954f8628819a0739ba00a {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03426.WXS.T.hg38 C3N-03426 PDA WXS tumor CPT0226600007 c426ad7d-ed66-442f-a1ce-2695de7d1033_wxs_gdc_realn.bam 79600914249 BAM harmonized CPTAC3 99580b9c-c584-4819-ad81-6e875543c0aa 70748e5f7e3338111e0ca4dc179913ef {"aliquot_tag": "ALQ_5ff933b2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.MethArray.Green.T C3N-03428 PDA Methylation_Array tumor CPT0226680008 203561620043_R01C01_Grn.idat 13676212 IDAT Green NA CPTAC3 65cdff2e-08d6-475a-9b24-9d775a4784dc 7df95f7f38fa4f179f98c12312a07b9c {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.MethArray.Red.T C3N-03428 PDA Methylation_Array tumor CPT0226680008 203561620043_R01C01_Red.idat 13676212 IDAT Red NA CPTAC3 ab6719f9-5a7f-4632-81d4-a7bdab79a4ae f391dd5ba4e89e4cf81125a097de00d6 {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.miRNA-Seq.S29_L005_R1.T C3N-03428 PDA miRNA-Seq tumor CPT0226680011 190712_UNC32-K00270_0192_BH7HL3BBXY_GCCAAT_S29_L005_R1_001.unaln.bam 256151116 BAM S29_L005_R1 submitted_unaligned CPTAC3 e4b21eb7-e2b0-4964-b321-efe09cabc0a8 d145adb995125386a82d66c4d5cedfc6 {"aliquot_tag": "ALQ_9ff1ec07", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.miRNA-Seq.T.hg38 C3N-03428 PDA miRNA-Seq tumor CPT0226680011 86f5958b-f491-408e-a9f1-6d79fb4cb40d_mirnaseq_gdc_realn.bam 284249769 BAM harmonized CPTAC3 f8207596-f3ec-4fa9-a843-015006f95ef3 bd75045199f13c568776bd9f7242ee8f {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.RNA-Seq.chimeric.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.chimeric.gdc_realn.bam 32739224 BAM chimeric harmonized CPTAC3 194b64be-8c68-4a9e-89cf-df9cd544ad82 5f4fa78f22055baf22bc7ae95eadfb24 {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.RNA-Seq.genomic.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.genomic.gdc_realn.bam 8069722755 BAM genomic harmonized CPTAC3 52316ee4-0af6-4f8f-8183-5a9d7c6d74cd e4d90128f63f25bdfe9e092a092d6ba5 {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.RNA-Seq.S31_L008_R1.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R1_001.fastq.gz 3720892004 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 d4ac5776-aedd-417d-acfd-936a62bd5b7d a16dc63f2f96d241c51d09915decb5a5 {"aliquot_tag": "ALQ_9ff1ec07", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.RNA-Seq.S31_L008_R2.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R2_001.fastq.gz 3974453516 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 deab0ab5-9f7c-44e6-85ee-ac6a9a7cab11 b046df42ee9751a29771a21d077d9f96 {"aliquot_tag": "ALQ_9ff1ec07", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.RNA-Seq.transcriptome.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.transcriptome.gdc_realn.bam 9925576945 BAM transcriptome harmonized CPTAC3 c9db942a-f4f9-480b-ba8c-de25ab68a0fa ce938a86c82ac55e645578edeb21d0d8 {"aliquot_tag": "ALQ_9ff1ec07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.WGS.N C3N-03428 PDA WGS blood_normal CPT0226720002 CPT0226720002.WholeGenome.RP-1303.bam 64105818552 BAM submitted_aligned CPTAC3 689cbb5c-de24-4211-a92c-74b7c42ed346 0e755d1f57852195102a03df30c8d483 {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03428.WGS.N.hg38 C3N-03428 PDA WGS blood_normal CPT0226720002 df3d862b-c249-43df-a730-792e40c866de_wgs_gdc_realn.bam 93356081387 BAM harmonized CPTAC3 98404d6e-1b67-4609-bac9-b26d04eff976 58f84264482b709ce5d9746b55c4286a {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03428.WGS.T C3N-03428 PDA WGS tumor CPT0226680008 CPT0226680008.WholeGenome.RP-1303.bam 159184993263 BAM submitted_aligned CPTAC3 bebbed4e-065a-4fdb-90f6-2b89b325016e e15a94eba8445abd8e8750d1a8668082 {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.WGS.T.hg38 C3N-03428 PDA WGS tumor CPT0226680008 3c584b4e-bd54-4140-8b24-e25208429a2a_wgs_gdc_realn.bam 232119374195 BAM harmonized CPTAC3 513e5566-ceee-4f3a-a5d5-55e2c5ccccca ba6fda2145e78a09eeb7dac777f3922d {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.WXS.N C3N-03428 PDA WXS blood_normal CPT0226720002 CPT0226720002.WholeExome.RP-1303.bam 26837318595 BAM submitted_aligned CPTAC3 72c2cc68-82b6-433b-bda9-d3778e3e50bc 76ff118e2a022974ffb2511227d76289 {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03428.WXS.N.hg38 C3N-03428 PDA WXS blood_normal CPT0226720002 df3d862b-c249-43df-a730-792e40c866de_wxs_gdc_realn.bam 37356551717 BAM harmonized CPTAC3 26d7f2e8-8156-48c2-b39c-d2e5418147f6 128d918ffdb46a843cef41a757695714 {"aliquot_tag": "ALQ_9e0f47f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03428.WXS.T C3N-03428 PDA WXS tumor CPT0226680008 CPT0226680008.WholeExome.RP-1303.bam 47967324369 BAM submitted_aligned CPTAC3 87c981ee-c681-482c-a9bc-a93881b1e143 8fcac229d452ebcf78f158baa46bb51f {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03428.WXS.T.hg38 C3N-03428 PDA WXS tumor CPT0226680008 3c584b4e-bd54-4140-8b24-e25208429a2a_wxs_gdc_realn.bam 66224428551 BAM harmonized CPTAC3 f8b10c39-a5fb-4e95-95b3-18eafb8f4800 9d80471330a10a4eb3b8ecc7fe0c0b9a {"aliquot_tag": "ALQ_ff3665e2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.MethArray.Green.T C3N-03430 PDA Methylation_Array tumor CPT0226650007 203561450006_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 d1117d8a-8d93-4e88-a5e8-500f196b5d26 d9ab252a654bd88d2cdb863f85679696 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.MethArray.Red.T C3N-03430 PDA Methylation_Array tumor CPT0226650007 203561450006_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 3713dafe-38c5-48b9-86d7-5f73ebf9feae bc661d40e47a3e7ba31fbe4eff3d92cb {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.miRNA-Seq.S36_L004_R1.T C3N-03430 PDA miRNA-Seq tumor CPT0226650010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAGATC_S36_L004_R1_001.unaln.bam 311889008 BAM S36_L004_R1 submitted_unaligned CPTAC3 06aab8c5-097f-46a8-8997-ced55c40b803 b0e0f136b2ced0bbd27ba2f33ef13dc1 {"aliquot_tag": "ALQ_10661820", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.miRNA-Seq.T.hg38 C3N-03430 PDA miRNA-Seq tumor CPT0226650010 c284beff-1380-4156-a90c-ba1d022f1e03_mirnaseq_gdc_realn.bam 348498633 BAM harmonized CPTAC3 3474adb1-bf9c-4dda-8527-33fef24a3d55 661711d54db9000f9525f889847b1d27 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.RNA-Seq.chimeric.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.chimeric.gdc_realn.bam 111312047 BAM chimeric harmonized CPTAC3 479bcf08-6d36-4b84-b170-0e9a7ac17e21 5ffbec6dc535eaaa7b2a5e775067cd30 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.RNA-Seq.genomic.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.genomic.gdc_realn.bam 6631079726 BAM genomic harmonized CPTAC3 6d76451b-e7cc-4431-8cf1-bb574452022b 4549a0b784d3b3ecc2a94bf2f2427382 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.RNA-Seq.S1_L001_R1.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 2397546168 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 48bd5073-acb2-4ba5-8c6c-e0bea42b7012 3f8c62f879e28e558f9a7649ce5d2db0 {"aliquot_tag": "ALQ_10661820", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.RNA-Seq.S1_L001_R2.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 2370816951 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 8fe1f59a-76c6-42f0-b83e-8eeb928a0851 4981a0995db4a4229a7f4fb0d5fc8361 {"aliquot_tag": "ALQ_10661820", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.RNA-Seq.transcriptome.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.transcriptome.gdc_realn.bam 5641096665 BAM transcriptome harmonized CPTAC3 3b933097-e6fb-4f90-9bae-a0d77d2c4108 691778ec7fb97c7d28dff9502eae84e6 {"aliquot_tag": "ALQ_10661820", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.WGS.N C3N-03430 PDA WGS blood_normal CPT0226670002 CPT0226670002.WholeGenome.RP-1303.bam 67159181105 BAM submitted_aligned CPTAC3 e84df314-9b75-46d6-83c8-344559dcd0b8 30a72a01fcda87be57c5249b42f1eced {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03430.WGS.N.hg38 C3N-03430 PDA WGS blood_normal CPT0226670002 d830fd81-eac7-4f0d-b5fa-c51509daf431_wgs_gdc_realn.bam 97642542361 BAM harmonized CPTAC3 7f08857f-fc3d-41c5-82af-28edd49df44b 77c496db585ca72d57fc98e708d66fbc {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03430.WGS.T C3N-03430 PDA WGS tumor CPT0226650007 CPT0226650007.WholeGenome.RP-1303.bam 115138493964 BAM submitted_aligned CPTAC3 9d2a9eea-fb74-4839-badb-39b2780e01a0 06092948fd3c26d5d163b97097e1fa06 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.WGS.T.hg38 C3N-03430 PDA WGS tumor CPT0226650007 690d9895-ded6-4991-939a-5316e6da152a_wgs_gdc_realn.bam 167250407955 BAM harmonized CPTAC3 632ea71a-ceb4-418b-a7ce-17cd18dd107a 42e8eb9047d069b15c933f9e9b7c1ccc {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.WXS.N C3N-03430 PDA WXS blood_normal CPT0226670002 CPT0226670002.WholeExome.RP-1303.bam 26952602362 BAM submitted_aligned CPTAC3 1d28a6e8-730e-4075-bf87-7135a75f015c a9592dd63cc57c2dbc4008c40d576ae7 {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03430.WXS.N.hg38 C3N-03430 PDA WXS blood_normal CPT0226670002 d830fd81-eac7-4f0d-b5fa-c51509daf431_wxs_gdc_realn.bam 36777887179 BAM harmonized CPTAC3 fac002b5-59e3-4436-8e4e-e356015f059e c05764becb8fd491782bee53c9d62bc2 {"aliquot_tag": "ALQ_9db31b2d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03430.WXS.T C3N-03430 PDA WXS tumor CPT0226650007 CPT0226650007.WholeExome.RP-1303.bam 57832486132 BAM submitted_aligned CPTAC3 51423404-09f8-41f4-86dc-17b845f732e6 155d136d8ddc7686b5c605759e186e72 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03430.WXS.T.hg38 C3N-03430 PDA WXS tumor CPT0226650007 690d9895-ded6-4991-939a-5316e6da152a_wxs_gdc_realn.bam 79350124184 BAM harmonized CPTAC3 966b0f79-5465-42b5-b0cb-430ec1c4d65f c8e0ac639f8f5b7eccfbf3c6c905f945 {"aliquot_tag": "ALQ_9719bcc2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.MethArray.Green.T C3N-03433 HNSCC Methylation_Array tumor CPT0246540006 203220070084_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f3d5b2cd-08a5-4505-ada7-ef8fa1347134 4659cdf453d699d5c4d5062d2caa4db7 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.MethArray.Red.T C3N-03433 HNSCC Methylation_Array tumor CPT0246540006 203220070084_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 68814217-c1a6-4642-a357-60849b805e4e 5be35312f6fab5f5aa6d3d2b977516e3 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.miRNA-Seq.S46_L007_R1.T C3N-03433 HNSCC miRNA-Seq tumor CPT0246540009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L007_R1_001.unaln.bam 154690817 BAM S46_L007_R1 submitted_unaligned CPTAC3 580c152f-0bf9-44bc-b980-6598d4e7e533 b4aa28776988225aaa56a8ae887569e6 {"aliquot_tag": "ALQ_d3ac35c", "sample": "S46", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.miRNA-Seq.T.hg38 C3N-03433 HNSCC miRNA-Seq tumor CPT0246540009 a962a8dd-31dc-4489-a272-455822f6b5ba_mirnaseq_gdc_realn.bam 176192367 BAM harmonized CPTAC3 29eba54f-25ca-485b-99bc-e9ea311f4640 b19e3a7528671918cd66ded1b730e7bf {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.chimeric.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.chimeric.gdc_realn.bam 29788071 BAM chimeric harmonized CPTAC3 633ff37c-9313-4da2-960f-0156a8329878 9d12d300c3814f965cac81f573c4cbdf {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.chimeric.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.chimeric.gdc_realn.bam 65873853 BAM chimeric harmonized CPTAC3 f7ef5403-705e-4a9f-b9e9-ae0d929a9dc9 ccf2ce8bb60909bbf5eaf0d3428af1ca {"aliquot_tag": "ALQ_2d906c28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.genomic.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.genomic.gdc_realn.bam 7979331765 BAM genomic harmonized CPTAC3 aa8c0a9b-7405-4c24-9147-1a55616d6757 f03a1ca0110caf97d12af98f86a4836c {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.genomic.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.genomic.gdc_realn.bam 6731952855 BAM genomic harmonized CPTAC3 f5a33d09-baa5-4f09-aac7-ace9f92b407f fdf5fac8be8aa08e9f15c95948e588c0 {"aliquot_tag": "ALQ_2d906c28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.S22_L006_R1.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R1_001.fastq.gz 3708802195 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 ed013c48-952a-4f72-ba08-175e6da76a1a 7aeea3c6ffc3ea4fbea9977c56d46be4 {"aliquot_tag": "ALQ_d3ac35c", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.S22_L006_R2.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R2_001.fastq.gz 4197303956 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 49070be9-0373-416d-9be7-d4940215d243 5e7ba1b92b76c3d1f80c7f17f0c6566d {"aliquot_tag": "ALQ_d3ac35c", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.S60_R1.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R1_001.fastq.gz 3721069148 FASTQ S60_R1 submitted_unaligned CPTAC3 3bceb11f-7a0f-404d-82bd-8807c6e2996d 2d6ed45c651aaa5ecd9f23417fa70349 {"aliquot_tag": "ALQ_2d906c28", "sample": "S60", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.S60_R2.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R2_001.fastq.gz 3972555233 FASTQ S60_R2 submitted_unaligned CPTAC3 d7ef5f90-8ea4-4ba3-822c-7c3c6cd85f0c 232239c0ab975ec71b0d166d49a267a7 {"aliquot_tag": "ALQ_2d906c28", "sample": "S60", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.transcriptome.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.transcriptome.gdc_realn.bam 9747723758 BAM transcriptome harmonized CPTAC3 7f97baca-fd0c-4045-9150-f8336245d206 c2447a9ba58869bd5428006e32a0b32b {"aliquot_tag": "ALQ_d3ac35c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.RNA-Seq.transcriptome.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.transcriptome.gdc_realn.bam 5721998501 BAM transcriptome harmonized CPTAC3 a103372c-5db1-4ad0-a149-14d15d5637d3 7ea7a47fbd4d744ba8be525b72d59278 {"aliquot_tag": "ALQ_2d906c28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.WGS.N C3N-03433 HNSCC WGS blood_normal CPT0246580002 CPT0246580002.WholeGenome.RP-1303.bam 62828333389 BAM submitted_aligned CPTAC3 b665f9e7-ed8b-4cdd-a99d-4adac88a6281 bb70d43d85fe8a2f2825b3915f88efd7 {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03433.WGS.N.hg38 C3N-03433 HNSCC WGS blood_normal CPT0246580002 f6da68ae-560b-4c3b-9491-3de4f4e258eb_wgs_gdc_realn.bam 92639762512 BAM harmonized CPTAC3 7b2b52f2-aa0c-4549-8517-79b95b8ae273 9ed15abbc79de596a338e694694f0928 {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03433.WGS.T C3N-03433 HNSCC WGS tumor CPT0246540006 CPT0246540006.WholeGenome.RP-1303.bam 85106433978 BAM submitted_aligned CPTAC3 3b3f354b-1b91-4286-a239-ba41ead91886 e4dc0cf326a12a1c5905ab5d5d7a9af8 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.WGS.T.hg38 C3N-03433 HNSCC WGS tumor CPT0246540006 9b9514c9-9703-4749-8826-8e416ab90086_wgs_gdc_realn.bam 123803329850 BAM harmonized CPTAC3 288e741a-1127-49e5-bce1-a88669744b9d cc2fce31a76b57b6875773482364f3d6 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.WXS.N C3N-03433 HNSCC WXS blood_normal CPT0246580002 CPT0246580002.WholeExome.RP-1303.bam 24358729871 BAM submitted_aligned CPTAC3 18c49978-c566-4774-adb1-9c2b272d3fea c684d5f7d61bd5ff2c5738bf8cd850ec {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03433.WXS.N.hg38 C3N-03433 HNSCC WXS blood_normal CPT0246580002 f6da68ae-560b-4c3b-9491-3de4f4e258eb_wxs_gdc_realn.bam 33418519250 BAM harmonized CPTAC3 699303ee-1e27-4e62-b7cb-d9988bd24dda b50667517b56abf92ec37634ba195da7 {"aliquot_tag": "ALQ_5f18f7d5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03433.WXS.T C3N-03433 HNSCC WXS tumor CPT0246540006 CPT0246540006.WholeExome.RP-1303.bam 33681589011 BAM submitted_aligned CPTAC3 758ba410-a829-4d2c-9339-504a69ca8d2f 812389a3e816114327e811a30e8c55c0 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03433.WXS.T.hg38 C3N-03433 HNSCC WXS tumor CPT0246540006 9b9514c9-9703-4749-8826-8e416ab90086_wxs_gdc_realn.bam 45754644843 BAM harmonized CPTAC3 6296db9d-c596-4368-a5b2-0da9decc468c 680e3ae05a0cab4a5ebb9c2acc7ddc15 {"aliquot_tag": "ALQ_9d85decd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03438.RNA-Seq.chimeric.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.chimeric.gdc_realn.bam 117622750 BAM chimeric harmonized CPTAC3 9ab97120-b3c5-45f8-b86d-9f8a0eea6937 5cb6c5a791824ca85f954b631502f4ce {"aliquot_tag": "ALQ_b9d6966a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03438.RNA-Seq.genomic.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.genomic.gdc_realn.bam 5435031485 BAM genomic harmonized CPTAC3 26981751-e14c-40ae-b174-ef0c2b2b0ca2 aab7f10bfae165a0b41603c7869863df {"aliquot_tag": "ALQ_b9d6966a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03438.RNA-Seq.S89_R1.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R1_001.fastq.gz 3607910603 FASTQ S89_R1 submitted_unaligned CPTAC3 a81bd3fe-db96-4afd-9bab-fc3ac0b8ba30 e9499c0bc4448c311103768f3c994275 {"aliquot_tag": "ALQ_b9d6966a", "sample": "S89", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03438.RNA-Seq.S89_R2.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R2_001.fastq.gz 3739843122 FASTQ S89_R2 submitted_unaligned CPTAC3 acbe8b30-2dff-4b1d-a4c9-8d8c2a66af6c 8b08674c1e0da00396803b4b9f3693dd {"aliquot_tag": "ALQ_b9d6966a", "sample": "S89", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03438.RNA-Seq.transcriptome.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.transcriptome.gdc_realn.bam 3896982230 BAM transcriptome harmonized CPTAC3 8fce4ff2-a367-4086-837a-e4097270001f 78183288e3292cff1640239a6fd77959 {"aliquot_tag": "ALQ_b9d6966a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03439.MethArray.Green.T C3N-03439 PDA Methylation_Array tumor CPT0246260010 203561620095_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bf67fc59-9188-4e92-9c69-c0c635be60e7 e55ee7ed28efb444def17b1b48694592 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.MethArray.Red.T C3N-03439 PDA Methylation_Array tumor CPT0246260010 203561620095_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 dd25ef84-d242-4962-815c-9a76bc282df3 e14d6ad029d2b7a39466bb9c9fdec9b7 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.miRNA-Seq.S19_L004_R1.T C3N-03439 PDA miRNA-Seq tumor CPT0246260007 190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L004_R1_001.unaln.bam 209647151 BAM S19_L004_R1 submitted_unaligned CPTAC3 6a6f1bdf-3399-4258-98b3-af71700678fe f900c8c198016e788890901b72ec90c3 {"aliquot_tag": "ALQ_8d478d83", "sample": "S19", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.miRNA-Seq.T.hg38 C3N-03439 PDA miRNA-Seq tumor CPT0246260007 cfe81935-c97e-464c-bf66-e21e3856757e_mirnaseq_gdc_realn.bam 241526043 BAM harmonized CPTAC3 a51e8bae-1604-4095-91cb-0a21c9bdd62d 0d045e02b0a5a6b27f4195944865c61c {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.RNA-Seq.chimeric.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.chimeric.gdc_realn.bam 29189824 BAM chimeric harmonized CPTAC3 bcc48430-2bc7-43c0-8ead-f4a821a1cbce 16ca99c4bc07bb32910edf71fb41a510 {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.RNA-Seq.genomic.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.genomic.gdc_realn.bam 7904147192 BAM genomic harmonized CPTAC3 50b35bf4-cb86-4dc0-b8f7-2ec4563cc2ac f7a522e04ebca410f887d4e2b05a72fa {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.RNA-Seq.S7_L002_R1.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3651426360 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 733cff74-fce8-4ca0-8419-345f3b8f9e32 8b55ae2102ca748c115b4d94a7c10a8e {"aliquot_tag": "ALQ_8d478d83", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.RNA-Seq.S7_L002_R2.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4218278823 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 8dba4a07-6c9f-435d-a734-c00d9700b809 33253889f7e0463873e069deb5e75f00 {"aliquot_tag": "ALQ_8d478d83", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.RNA-Seq.transcriptome.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.transcriptome.gdc_realn.bam 10727802900 BAM transcriptome harmonized CPTAC3 76a5a913-1b84-44ce-80f0-aea9f28a3d5d b533e02942fe6995c38ef7fd285c50f8 {"aliquot_tag": "ALQ_8d478d83", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.WGS.N C3N-03439 PDA WGS blood_normal CPT0246300002 CPT0246300002.WholeGenome.RP-1303.bam 70732851662 BAM submitted_aligned CPTAC3 f97075a3-df6a-4208-ac02-2f9e7719ec33 86f90934f5be4583726ce59fd1b42b15 {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03439.WGS.N.hg38 C3N-03439 PDA WGS blood_normal CPT0246300002 b16d1725-592b-4706-8e06-3f82e29aa80f_wgs_gdc_realn.bam 103714929548 BAM harmonized CPTAC3 95dd370f-fc32-48c8-b01d-b2ef95a3dd8f cc1efde267e1621281a727949d24efc0 {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03439.WGS.T C3N-03439 PDA WGS tumor CPT0246260010 CPT0246260010.WholeGenome.RP-1303.bam 137064081479 BAM submitted_aligned CPTAC3 09d750dd-bd9a-4a5f-9d8e-da929fb50173 0abb30962cb20726be3593baa2b32065 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.WGS.T.hg38 C3N-03439 PDA WGS tumor CPT0246260010 43a0c81e-9e4b-4938-b601-b7450500bac7_wgs_gdc_realn.bam 199310145608 BAM harmonized CPTAC3 1210d4fc-3234-482c-b4d7-9397ab4813c4 afc2659a2f830326e8855c880e458f55 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.WXS.N C3N-03439 PDA WXS blood_normal CPT0246300002 CPT0246300002.WholeExome.RP-1303.bam 23486987717 BAM submitted_aligned CPTAC3 6eb40ddd-696c-4d8c-8a43-cfb1891c631e 23e0481522eeccd6b342f1633f7e5954 {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03439.WXS.N.hg38 C3N-03439 PDA WXS blood_normal CPT0246300002 b16d1725-592b-4706-8e06-3f82e29aa80f_wxs_gdc_realn.bam 32612506300 BAM harmonized CPTAC3 4ed0783e-3bb8-4ed7-a927-fd11d84dbfb8 80aba468c1cd81bea3b3b87aabd998ee {"aliquot_tag": "ALQ_b9315f09", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03439.WXS.T C3N-03439 PDA WXS tumor CPT0246260010 CPT0246260010.WholeExome.RP-1303.bam 53152559458 BAM submitted_aligned CPTAC3 670c48bd-7e26-46fd-8444-e030a77a6b39 9b6d00a4d3cc6eba6a2e756ac2ededa4 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03439.WXS.T.hg38 C3N-03439 PDA WXS tumor CPT0246260010 43a0c81e-9e4b-4938-b601-b7450500bac7_wxs_gdc_realn.bam 74230558070 BAM harmonized CPTAC3 94bdf0ae-7c07-4eff-8199-4de6a73ae250 cb551bee3235e8f62e44eed1fbea14d3 {"aliquot_tag": "ALQ_a382961", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.MethArray.Green.A C3N-03440 PDA Methylation_Array tissue_normal CPT0246220007 203561620052_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4ed1eb10-ac7b-460a-a1fe-abaaf59a49a9 8ae0f8c9e91cf671fcacfb09e826f1d7 {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.MethArray.Green.T C3N-03440 PDA Methylation_Array tumor CPT0246210010 203561450062_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 5f4c3129-c2f4-4850-b7c7-0f1c1f3cd5ec 02fc490eaab4dfe178eeaeffb22d2684 {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.MethArray.Red.A C3N-03440 PDA Methylation_Array tissue_normal CPT0246220007 203561620052_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 bc5d1185-037d-4dfa-a9e9-7dc5b9374fb6 0b80cf4032506baa9d2072af20478bbd {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.MethArray.Red.T C3N-03440 PDA Methylation_Array tumor CPT0246210010 203561450062_R01C01_Red.idat 13676217 IDAT Red NA CPTAC3 ed9e2b10-ccdb-4128-950f-20772cb71f01 b298fae644f2db38401c97bf9c9c834b {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.miRNA-Seq.A.hg38 C3N-03440 PDA miRNA-Seq tissue_normal CPT0246220010 4a20de06-79ec-4920-92b6-1178541a7e66_mirnaseq_gdc_realn.bam 289167908 BAM harmonized CPTAC3 e4c62540-de65-4be6-9b0f-397245edf8b9 fdfee1d9206c4f961d5a2b2e65066a0f {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.miRNA-Seq.S18_L004_R1.T C3N-03440 PDA miRNA-Seq tumor CPT0246210007 190712_UNC32-K00270_0192_BH7HL3BBXY_TAATCG_S18_L004_R1_001.unaln.bam 215458294 BAM S18_L004_R1 submitted_unaligned CPTAC3 0aefa218-3f11-42f5-a99c-779b5d325ba0 1a4abe9aa752c8448e372ac59c27d70d {"aliquot_tag": "ALQ_3f675193", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.miRNA-Seq.S2_L003_R1.A C3N-03440 PDA miRNA-Seq tissue_normal CPT0246220010 190813_UNC32-K00270_0196_AH5MCWBBXY_TCGGCA_S2_L003_R1_001.unaln.bam 254477644 BAM S2_L003_R1 submitted_unaligned CPTAC3 ce85c0f7-7250-40f6-babe-d15301ac78fe 988b148948d3dd782be980b8f79e265a {"aliquot_tag": "ALQ_ffb88fa1", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.miRNA-Seq.T.hg38 C3N-03440 PDA miRNA-Seq tumor CPT0246210007 84854605-fa1e-4b14-9786-0de6323df9a4_mirnaseq_gdc_realn.bam 244230165 BAM harmonized CPTAC3 a9581d80-c6f2-45b5-b969-460af965bd3b de9907a2436d9afbb51978bb976d14c9 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.RNA-Seq.chimeric.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.chimeric.gdc_realn.bam 17972583 BAM chimeric harmonized CPTAC3 c92d36a7-2f0b-4ae5-8c43-498e44e1ede5 528a8a5d502b248564f7f157281ee06f {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.RNA-Seq.chimeric.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.chimeric.gdc_realn.bam 34078626 BAM chimeric harmonized CPTAC3 1c90094f-757e-4c86-a22a-35bdc731f7e0 31a984b945fa42a2d1447bdf1b3d86e9 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.RNA-Seq.genomic.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.genomic.gdc_realn.bam 6120920674 BAM genomic harmonized CPTAC3 35c76e83-8cd6-4063-ab84-62a887a3197f 6ad7935c8c6bca96c4b24bbb1a6f5ce9 {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.RNA-Seq.genomic.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.genomic.gdc_realn.bam 9811573427 BAM genomic harmonized CPTAC3 058f4a41-89d7-480f-89d1-0327e8d278df 63569727f0cb626352cb32b3c0c7e983 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.RNA-Seq.S10_L003_R1.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R1_001.fastq.gz 2696677218 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 f74f07bc-dcde-4f6e-a8e6-97dccda7aaaa a284295ea46ca4c306207a3cd4279ec9 {"aliquot_tag": "ALQ_ffb88fa1", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.RNA-Seq.S10_L003_R2.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R2_001.fastq.gz 2942208621 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 4b27f03b-37e8-4cd4-bb29-6f9dd2f88a49 0bc62fed98f156868a3f41e293673b1e {"aliquot_tag": "ALQ_ffb88fa1", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.RNA-Seq.S8_L002_R1.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 4462547960 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 4ad2b663-f29f-4a07-a7a9-f8875933d4c6 35f54179ca8176fa1ea3166332cfdab9 {"aliquot_tag": "ALQ_3f675193", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.RNA-Seq.S8_L002_R2.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 5131330458 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 37012691-a5d6-461e-b40f-39ea45f9d68a 9929dbe871a50c7de6c9af8d400e3593 {"aliquot_tag": "ALQ_3f675193", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.RNA-Seq.transcriptome.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.transcriptome.gdc_realn.bam 7359376506 BAM transcriptome harmonized CPTAC3 b242e4d6-c20f-40fb-907a-560ab72a8d34 ec15a52aead2d1d38074b04f78a24749 {"aliquot_tag": "ALQ_ffb88fa1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.RNA-Seq.transcriptome.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.transcriptome.gdc_realn.bam 13467255123 BAM transcriptome harmonized CPTAC3 6d290755-02a3-4116-9d29-674a00336157 d9342c75999370d5ffeca16eae45a9f4 {"aliquot_tag": "ALQ_3f675193", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.WGS.N C3N-03440 PDA WGS blood_normal CPT0246250002 CPT0246250002.WholeGenome.RP-1303.bam 62651712138 BAM submitted_aligned CPTAC3 8356683a-24bf-4f4f-ac01-7a256165f422 8f69b7517ea52abec65f5fc07da84133 {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03440.WGS.N.hg38 C3N-03440 PDA WGS blood_normal CPT0246250002 c68f9ca9-8f35-4ff1-a751-cc6afeb6fc44_wgs_gdc_realn.bam 91303283275 BAM harmonized CPTAC3 8cece330-211e-49f6-a73c-7e189c52206c 6bb9844a264a24075688ce92da4d5d35 {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03440.WGS.T C3N-03440 PDA WGS tumor CPT0246210010 CPT0246210010.WholeGenome.RP-1303.bam 160900045068 BAM submitted_aligned CPTAC3 9c65fb69-2791-4a29-928c-9867ff04f2c5 7f83588818d8d92c1acf6cb301a8ae7c {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.WGS.T.hg38 C3N-03440 PDA WGS tumor CPT0246210010 0ae21f34-235f-468e-99c1-0c845c5f03ed_wgs_gdc_realn.bam 233491420625 BAM harmonized CPTAC3 2c0b860c-475e-4ad5-a1be-b8c56a295a5b 0f8982585771d7e9e514cabfe30e33f8 {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.WXS.A C3N-03440 PDA WXS tissue_normal CPT0246220007 CPT0246220007.WholeExome.RP-1303.bam 23886695329 BAM submitted_aligned CPTAC3 ba806666-5838-49ca-a8e1-09401e24f205 f99a5c17a74da871703cf8e74023af22 {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.WXS.A.hg38 C3N-03440 PDA WXS tissue_normal CPT0246220007 ccf21103-12a9-42a7-a7a4-ce6c5f53c291_wxs_gdc_realn.bam 32876188538 BAM harmonized CPTAC3 771725ef-0b97-4f55-9097-9ab1bf5b968d c96f0e12946f5b39fc1125c43ec7f8ed {"aliquot_tag": "ALQ_78c72b43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03440.WXS.N C3N-03440 PDA WXS blood_normal CPT0246250002 CPT0246250002.WholeExome.RP-1303.bam 34236952130 BAM submitted_aligned CPTAC3 647a878b-0300-4d9b-bbd9-e830884be721 fbdab3f35c174914cfe38b3fe5748c32 {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03440.WXS.N.hg38 C3N-03440 PDA WXS blood_normal CPT0246250002 c68f9ca9-8f35-4ff1-a751-cc6afeb6fc44_wxs_gdc_realn.bam 47803365342 BAM harmonized CPTAC3 11cb649f-3017-41d3-85bb-ed5fe75a3603 138112051ef0e952dbf7bd5070aecbff {"aliquot_tag": "ALQ_ba8d03dc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03440.WXS.T C3N-03440 PDA WXS tumor CPT0246210010 CPT0246210010.WholeExome.RP-1303.bam 43307235364 BAM submitted_aligned CPTAC3 e33d795d-4d14-4c05-8235-72805d22e0ec b981857a5a58559818416faa623c04eb {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03440.WXS.T.hg38 C3N-03440 PDA WXS tumor CPT0246210010 0ae21f34-235f-468e-99c1-0c845c5f03ed_wxs_gdc_realn.bam 59331845422 BAM harmonized CPTAC3 6b15040e-ce60-40e4-b233-a07f708e13d5 4fd714b6f774fbb78ab662de2570dbec {"aliquot_tag": "ALQ_b818f571", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.MethArray.Green.A C3N-03441 LSCC Methylation_Array tissue_normal CPT0245890006 203219650221_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9869303c-e56b-4a3a-8b85-4dbc4d6c1e74 9f12bf103c392b42ce01aa112783e360 {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.MethArray.Green.T C3N-03441 LSCC Methylation_Array tumor CPT0245880006 203219640047_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 6b7746e8-3420-48fd-8bfa-e9aeaf15be07 2304e358c80e7599771bdf9cf00a2429 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.MethArray.Red.A C3N-03441 LSCC Methylation_Array tissue_normal CPT0245890006 203219650221_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 ea0cc90b-ebaf-42b2-a492-d729818e5545 02364dc69653865ede315d03453fff21 {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.MethArray.Red.T C3N-03441 LSCC Methylation_Array tumor CPT0245880006 203219640047_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 c525c6cf-8b02-4de9-95f7-4ad21ff7838c ff0613ddbe54e43e810b27655ab6e307 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.miRNA-Seq.A.hg38 C3N-03441 LSCC miRNA-Seq tissue_normal CPT0245890009 9a2b708e-ddf4-4474-8520-eff80ba115ac_mirnaseq_gdc_realn.bam 234555214 BAM harmonized CPTAC3 82779b45-1279-4e11-92bb-c1bd36fc5f9a f742bf99346a7d4f3bc2fe5afca8cc7d {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.miRNA-Seq.S29_L004_R1.A C3N-03441 LSCC miRNA-Seq tissue_normal CPT0245890009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGGCC_S29_L004_R1_001.unaln.bam 213078044 BAM S29_L004_R1 submitted_unaligned CPTAC3 97860360-fa2b-45d1-ba6b-40749d81ffca 5e341e6622924e728b18ce01a095f33a {"aliquot_tag": "ALQ_78dc0eae", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.miRNA-Seq.S30_L004_R1.T C3N-03441 LSCC miRNA-Seq tumor CPT0245880009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGAAA_S30_L004_R1_001.unaln.bam 172088121 BAM S30_L004_R1 submitted_unaligned CPTAC3 0703f7e6-7af2-4561-ae38-7b8ff7868ef6 0ee23c0eed13ca497b5ef142d7c2d57b {"aliquot_tag": "ALQ_45bc271e", "sample": "S30", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.miRNA-Seq.T.hg38 C3N-03441 LSCC miRNA-Seq tumor CPT0245880009 741a2a7a-3f4e-4b72-bb89-fedb87a19526_mirnaseq_gdc_realn.bam 192020106 BAM harmonized CPTAC3 6fddab11-686d-4c9c-85fb-b55bed6a66d1 33045f30de0ec387d3590d1ef4dc46cc {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.RNA-Seq.chimeric.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.chimeric.gdc_realn.bam 213189618 BAM chimeric harmonized CPTAC3 be23c486-6448-4617-bf0c-5f9a30aa5b10 502091f4a0380c76c95a8b03a672ef36 {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.RNA-Seq.chimeric.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.chimeric.gdc_realn.bam 238270411 BAM chimeric harmonized CPTAC3 befbb703-172d-43c6-b5f8-e624b5c546bc 4eca5a693753c31f88ca7a5438db8f5e {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.RNA-Seq.genomic.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.genomic.gdc_realn.bam 7729759537 BAM genomic harmonized CPTAC3 e17f08bd-a155-4317-bef8-485fc12b6586 c210efd59f05e6be35fd8ebbe40d386f {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.RNA-Seq.genomic.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.genomic.gdc_realn.bam 10003188284 BAM genomic harmonized CPTAC3 5d47b10f-b838-4bb0-acf5-84a82a0b70c0 6bc223012113825440c5e8318e53646a {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.RNA-Seq.S10_L003_R1.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 4845477485 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 f1885822-bba2-4b9d-be2d-ff1092f16edf 49ebb917a6bccdc17af1828a816d501e {"aliquot_tag": "ALQ_45bc271e", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.RNA-Seq.S10_L003_R2.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 5285164029 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 5ade9763-0f5d-46d5-93bc-8dab152f682d 586fd37271d79428e449c5de7d595e6b {"aliquot_tag": "ALQ_45bc271e", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.RNA-Seq.S15_L004_R1.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R1_001.fastq.gz 3544778049 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 211d898b-61a9-44a6-9eda-23a3f4397456 7d5f140c3cc5ebb0e54bac29466cc795 {"aliquot_tag": "ALQ_78dc0eae", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.RNA-Seq.S15_L004_R2.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R2_001.fastq.gz 4021739315 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 be7e2f2d-13b5-4a91-b15b-4f9e3aeec7f6 a666fd447f20b110df2e06b29e6717c6 {"aliquot_tag": "ALQ_78dc0eae", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.RNA-Seq.transcriptome.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.transcriptome.gdc_realn.bam 8738975040 BAM transcriptome harmonized CPTAC3 e280cf77-97c7-463f-bd05-d2195ae5d31f 0d0dbc0a8ef55f18291f414fb9a2a01c {"aliquot_tag": "ALQ_78dc0eae", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.RNA-Seq.transcriptome.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.transcriptome.gdc_realn.bam 11925607780 BAM transcriptome harmonized CPTAC3 879c1719-2a1b-4138-8f22-90b9c7069f1d c87045bfcc6f0b217f7034017ac70254 {"aliquot_tag": "ALQ_45bc271e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.WGS.N C3N-03441 LSCC WGS blood_normal CPT0245920002 CPT0245920002.WholeGenome.RP-1303.bam 59342808443 BAM submitted_aligned CPTAC3 a4c31365-e18a-485d-af8e-9a50fe6d2929 abe7f354f2676bb1a5f5dc928c7fcc2b {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03441.WGS.N.hg38 C3N-03441 LSCC WGS blood_normal CPT0245920002 44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wgs_gdc_realn.bam 86480227712 BAM harmonized CPTAC3 c4a33c7d-e943-4289-bb44-762582ab397a 10d22b0f871042a533b330a98660660b {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03441.WGS.T C3N-03441 LSCC WGS tumor CPT0245880006 CPT0245880006.WholeGenome.RP-1303.bam 58519056636 BAM submitted_aligned CPTAC3 03e5abb4-f69f-4fb2-9f86-9445c476e832 bd00f48da928d4349dbbf4aa25282544 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.WGS.T.hg38 C3N-03441 LSCC WGS tumor CPT0245880006 32dd99c7-d21a-4c9d-903f-b3b270af7c81_wgs_gdc_realn.bam 85389508692 BAM harmonized CPTAC3 cdd04a83-a463-4d47-b3fb-c271eea57054 bd76c92f544e970c7c04c1c2ecc6a88e {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.WXS.A C3N-03441 LSCC WXS tissue_normal CPT0245890006 CPT0245890006.WholeExome.RP-1303.bam 21563172687 BAM submitted_aligned CPTAC3 084479aa-45ab-4266-bb8e-9f714cdfc452 ef486c3491a56e23905e3fa49bcfee1a {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.WXS.A.hg38 C3N-03441 LSCC WXS tissue_normal CPT0245890006 ff57d2ae-9f3e-411e-9cb6-729ff384ab20_wxs_gdc_realn.bam 30489695650 BAM harmonized CPTAC3 3a982043-1641-484b-b13e-1227f7d5e502 398b31c3d318fce9bf026ed04e0b6b10 {"aliquot_tag": "ALQ_e863133f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03441.WXS.N C3N-03441 LSCC WXS blood_normal CPT0245920002 CPT0245920002.WholeExome.RP-1303.bam 26498209763 BAM submitted_aligned CPTAC3 0cbeb5a3-ed6b-4c53-a897-1b5177d2de38 c30dd24060f7bee4f1c2fd5486d2cbf1 {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03441.WXS.N.hg38 C3N-03441 LSCC WXS blood_normal CPT0245920002 44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wxs_gdc_realn.bam 36840432967 BAM harmonized CPTAC3 b67c36c7-c280-4ffb-b911-f4f2e1f5a46f 446df57341de18744f54f9c67459cbd6 {"aliquot_tag": "ALQ_53823592", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03441.WXS.T C3N-03441 LSCC WXS tumor CPT0245880006 CPT0245880006.WholeExome.RP-1303.bam 21758719610 BAM submitted_aligned CPTAC3 1a0b9c25-b730-4fa5-b004-c9e154c64d30 7f02a2ca9e0f5675bd901f3f4bae8d75 {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03441.WXS.T.hg38 C3N-03441 LSCC WXS tumor CPT0245880006 32dd99c7-d21a-4c9d-903f-b3b270af7c81_wxs_gdc_realn.bam 29923883050 BAM harmonized CPTAC3 06361eff-ad77-40ec-8141-7488907e2522 8979fb2d7165ce7e03f703f92d27d8af {"aliquot_tag": "ALQ_d5033a8f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03446.MethArray.Green.A C3N-03446 GBM Methylation_Array tissue_normal CPT0404840014 205555390119_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 88d36cbf-69a2-4b05-ab54-8493bf8b254c b5dac09dd7986296fb538705cb293b38 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.MethArray.Red.A C3N-03446 GBM Methylation_Array tissue_normal CPT0404840014 205555390119_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 22efb14e-4b7e-4e1e-8a0a-4ead7b9d513e 27789f0a5e69044fb22353e0d1773e83 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.miRNA-Seq.A.hg38 C3N-03446 GBM miRNA-Seq tissue_normal CPT0404840017 49b74a33-dcd8-4fe6-ac80-93633aeefa24_mirnaseq_gdc_realn.bam 338824392 BAM harmonized CPTAC3 3dabf648-bda9-45e7-b7dd-35dd422dbba5 fb93f1f2bb9cf90ec2e016e19bfdaa36 {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.miRNA-Seq.S36_L005_R1.A C3N-03446 GBM miRNA-Seq tissue_normal CPT0404840017 210702_UNC32-K00270_0289_AHKJ22BBXY_TATAAT_S36_L005_R1_001.unaln.bam 316093048 BAM S36_L005_R1 submitted_unaligned CPTAC3 26c61e95-8e69-4aac-8093-f950400fac1e 3ce29dce686d5d5a92493516b4475564 {"aliquot_tag": "ALQ_2fc8aa9d", "sample": "S36", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.RNA-Seq.chimeric.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.chimeric.gdc_realn.bam 344655729 BAM chimeric harmonized CPTAC3 1c88c488-f89d-49cf-a806-2b01bb1bc07c 73c61e0a58771825b098a3441b14d84d {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.RNA-Seq.genomic.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.genomic.gdc_realn.bam 8685139216 BAM genomic harmonized CPTAC3 1fc41680-8893-44e4-9c54-4d3eda319053 0c369044438f39893f67321c36760dc1 {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.RNA-Seq.S15_L004_R1.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 5a9e30f7-2202-4950-a643-61f2b2a1579d d80f04a2683316e2659b06508edc4196 {"aliquot_tag": "ALQ_2fc8aa9d", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.RNA-Seq.S15_L004_R2.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 2c66f195-9484-4900-9338-d02c9392ee59 bd04445d03281a0ef5a319f077c4fc8a {"aliquot_tag": "ALQ_2fc8aa9d", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.RNA-Seq.transcriptome.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.transcriptome.gdc_realn.bam 8553390343 BAM transcriptome harmonized CPTAC3 aca75e9b-0f8d-4dfc-a4be-aee908746d60 05b9e0f61fe11eca3d83888d2f519541 {"aliquot_tag": "ALQ_2fc8aa9d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.WXS.A C3N-03446 GBM WXS tissue_normal CPT0404840014 CPT0404840014.WholeExome.RP-1303.bam 22291412082 BAM submitted_aligned CPTAC3 faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af 96990bbca730a0929138c7ebf0f03f09 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03446.WXS.A.hg38 C3N-03446 GBM WXS tissue_normal CPT0404840014 2ffb059e-abc1-48e4-8d8f-de903f6cabe3_wxs_gdc_realn.bam 31302407798 BAM harmonized CPTAC3 6bc6c3bf-8a28-46ab-9f0c-188e00dc39b7 711f48de972f17317d486ef53ef94519 {"aliquot_tag": "ALQ_b6c1fb27", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-03448.MethArray.Green.T C3N-03448 GBM Methylation_Array tumor CPT0225870006 204372030127_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0695eb5d-f8ff-4fa1-88ea-e2b4348583f1 8748ce07993cb7e7e05e622a8502101a {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.MethArray.Red.T C3N-03448 GBM Methylation_Array tumor CPT0225870006 204372030127_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 58b8baf0-e2d0-4d78-b683-175aa024940f ce8441014e6623091a86ab6082bf0661 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.miRNA-Seq.S35_L008_R1.T C3N-03448 GBM miRNA-Seq tumor CPT0225870013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATTTT_S35_L008_R1_001.unaln.bam 301304798 BAM S35_L008_R1 submitted_unaligned CPTAC3 ed576d30-32bf-49ac-8c9e-578a83e34954 0248c4f80b6d477a2c8a02d234b212b9 {"aliquot_tag": "ALQ_f84d6117", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.miRNA-Seq.T.hg38 C3N-03448 GBM miRNA-Seq tumor CPT0225870013 eeec2ff6-2b25-402c-ad52-d9ab89e5ede0_mirnaseq_gdc_realn.bam 327854229 BAM harmonized CPTAC3 640768a1-ee61-4959-8019-5b652de1bec9 e7975942bb304e5ed73ff7b4ceb777a2 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.RNA-Seq.chimeric.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.chimeric.gdc_realn.bam 38113010 BAM chimeric harmonized CPTAC3 9969c214-7d4c-4c69-b007-0b5ee9487b64 f2c0a23bcb115933f45e770e197597d7 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.RNA-Seq.genomic.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.genomic.gdc_realn.bam 7964790003 BAM genomic harmonized CPTAC3 e9cef254-fb6d-4f96-b126-3e948521ae22 9c4b4191944aaeed83d28d67b140ed52 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.RNA-Seq.S13_L004_R1.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 3338a3d1-7dfb-47eb-a5f9-d95dce211972 b62fac399efece5dcebd0e2a1cfe2d27 {"aliquot_tag": "ALQ_f84d6117", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.RNA-Seq.S13_L004_R2.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 1ed68c0c-2d05-45a3-8479-5b09081e06b3 94ff1c499b7dc256f52514e33feb9ae1 {"aliquot_tag": "ALQ_f84d6117", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.RNA-Seq.transcriptome.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.transcriptome.gdc_realn.bam 8207362335 BAM transcriptome harmonized CPTAC3 8b245a9b-9541-4be6-8f9c-6bbbec54becf 3dd74a2ad8405d919c34fc55b40643b8 {"aliquot_tag": "ALQ_f84d6117", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.WGS.N C3N-03448 GBM WGS blood_normal CPT0225890002 CPT0225890002.WholeGenome.RP-2158.bam 26717378576 BAM submitted_aligned CPTAC3 28bef61d-1ebb-4e66-8d27-9c253535c98c a7e086d03fa73f5efbdf2b968ffd3413 {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03448.WGS.N.hg38 C3N-03448 GBM WGS blood_normal CPT0225890002 cc3fdea7-e732-40b1-a3c8-76a0a704400b_wgs_gdc_realn.bam 78736410378 BAM harmonized CPTAC3 38086ca8-0290-41a9-8ed4-b7db18d6022f 7d99607de5bfbd14b3bfbf5ea1784ecb {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03448.WGS.T C3N-03448 GBM WGS tumor CPT0225870006 CPT0225870006.WholeGenome.RP-2158.bam 27006538735 BAM submitted_aligned CPTAC3 56676a0e-5175-45ec-ad15-48766365d3d9 a21b029924ff3bdce7f04cf947d5bf46 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.WGS.T.hg38 C3N-03448 GBM WGS tumor CPT0225870006 88b92c30-d2a1-4082-8f8a-74b0c810e12c_wgs_gdc_realn.bam 81360762813 BAM harmonized CPTAC3 b713420f-1781-4045-8984-5ad7e13ee429 ad6ff65698af8878a66bb1c8bee0fbc7 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.WXS.N C3N-03448 GBM WXS blood_normal CPT0225890002 CPT0225890002.WholeExome.RP-1303.bam 26594326910 BAM submitted_aligned CPTAC3 cbda0e56-2b5d-4399-b501-9f8f109f2a11 700bb82df53726479b1a8d4e8cc471a5 {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03448.WXS.N.hg38 C3N-03448 GBM WXS blood_normal CPT0225890002 cc3fdea7-e732-40b1-a3c8-76a0a704400b_wxs_gdc_realn.bam 36135835999 BAM harmonized CPTAC3 d5110845-d1e0-40ec-bb1f-4a579825fd3a 034fb7f530a5a5775787b69d7760b9ea {"aliquot_tag": "ALQ_2961dea1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03448.WXS.T C3N-03448 GBM WXS tumor CPT0225870006 CPT0225870006.WholeExome.RP-1303.bam 25599255128 BAM submitted_aligned CPTAC3 1ed97cb4-7639-4cc6-a9c8-96b394f3f684 8354f579247c603c34b68c81c477984f {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03448.WXS.T.hg38 C3N-03448 GBM WXS tumor CPT0225870006 88b92c30-d2a1-4082-8f8a-74b0c810e12c_wxs_gdc_realn.bam 35505337871 BAM harmonized CPTAC3 fbe33cf3-286e-4018-b4a5-0646edd91277 f9f45f86e9589e06ef90d92b55715790 {"aliquot_tag": "ALQ_913ca4d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.MethArray.Green.T C3N-03449 GBM Methylation_Array tumor CPT0225900006 204372030161_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 da2106f0-deed-4164-b4f3-ea72d4cf40e0 df53605c9ca5ff5c3d8d5ac4532eadd5 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.MethArray.Red.T C3N-03449 GBM Methylation_Array tumor CPT0225900006 204372030161_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 b56d60b0-d2b6-4aa5-abf5-a748290a9987 d4664862318d7784b09efab7c58b640a {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.miRNA-Seq.S46_L002_R1.T C3N-03449 GBM miRNA-Seq tumor CPT0225900009 200403_UNC31-K00269_0274_AHCF7GBBXY_CGTACG_S46_L002_R1_001.unaln.bam 195887899 BAM S46_L002_R1 submitted_unaligned CPTAC3 ecaf2935-c115-48e2-95b7-cdb322278f82 5aa6f3e0016d098ac3acdcd40fa10b19 {"aliquot_tag": "ALQ_78ffb6fd", "sample": "S46", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.miRNA-Seq.T.hg38 C3N-03449 GBM miRNA-Seq tumor CPT0225900009 4cc2f843-c740-42b7-967a-6a4d834c3d1a_mirnaseq_gdc_realn.bam 212546070 BAM harmonized CPTAC3 22ac38ed-4b1e-4075-9ad1-2b3cbb456f1e c2fa16b573e496b393e44a6bdc8b6c69 {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.RNA-Seq.chimeric.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.chimeric.gdc_realn.bam 21300651 BAM chimeric harmonized CPTAC3 73575e3c-6fb2-47ff-a820-c71a1e426705 6e7a8193ce252460b6b8d88ffac14308 {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.RNA-Seq.genomic.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.genomic.gdc_realn.bam 6494197788 BAM genomic harmonized CPTAC3 b06b2113-f39e-4a75-ad96-e95dde4398c8 5e6990e7e88f50ad78822249dfbd8570 {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.RNA-Seq.S14_L004_R1.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 d8df9e03-10b6-41a3-972f-b6038ca02881 e6dc54aa448f276e4089d1ead66c8871 {"aliquot_tag": "ALQ_78ffb6fd", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.RNA-Seq.S14_L004_R2.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 289921b1-b467-487e-ad93-095bdb3834ce a20a1070426b794a2829f22d7259bf6d {"aliquot_tag": "ALQ_78ffb6fd", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.RNA-Seq.transcriptome.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.transcriptome.gdc_realn.bam 8873967452 BAM transcriptome harmonized CPTAC3 8b9343b6-c0be-47cb-960f-c5b776fae50a ff26a2f8b3f34c9cc9f2ae3f34ea76ef {"aliquot_tag": "ALQ_78ffb6fd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.WGS.N C3N-03449 GBM WGS blood_normal CPT0225920002 CPT0225920002.WholeGenome.RP-2158.bam 20948538145 BAM submitted_aligned CPTAC3 de4e7d48-94d5-4d04-b1f0-54961182666b 528e6538115761445f72a8fb7f8c816d {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03449.WGS.N.hg38 C3N-03449 GBM WGS blood_normal CPT0225920002 42736975-7e8e-49ed-b85f-298eab5e784c_wgs_gdc_realn.bam 63629727764 BAM harmonized CPTAC3 12254d50-a4ec-4853-9b55-6e923e7ad99a 291df2c963457d4e6eaed5edd2cd1712 {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03449.WGS.T C3N-03449 GBM WGS tumor CPT0225900006 CPT0225900006.WholeGenome.RP-2158.bam 27759977402 BAM submitted_aligned CPTAC3 dee71466-6729-4791-8938-13ae43573976 852ee2c6f47a4683394a11a52dac8e87 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.WGS.T.hg38 C3N-03449 GBM WGS tumor CPT0225900006 95344601-8d6d-4b58-b23c-2482f039b375_wgs_gdc_realn.bam 82964057648 BAM harmonized CPTAC3 cd651894-4cf9-42a1-a907-d8a88f56d660 a2830840e29acd293ceddb4ecb28d68a {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.WXS.N C3N-03449 GBM WXS blood_normal CPT0225920002 CPT0225920002.WholeExome.RP-1303.bam 22286780870 BAM submitted_aligned CPTAC3 f32cb33d-4283-4ce0-b90f-208b6862f1bb f1c8cdf0b7be9cad3e79f63e257e19c3 {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03449.WXS.N.hg38 C3N-03449 GBM WXS blood_normal CPT0225920002 42736975-7e8e-49ed-b85f-298eab5e784c_wxs_gdc_realn.bam 30794323298 BAM harmonized CPTAC3 e9cc9f57-6994-4632-99c3-b7b44deb2f42 e9dff8e28fde0bf67d4b8ffe6bc71144 {"aliquot_tag": "ALQ_95ed3c15", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03449.WXS.T C3N-03449 GBM WXS tumor CPT0225900006 CPT0225900006.WholeExome.RP-1303.bam 27253392773 BAM submitted_aligned CPTAC3 d08b9b23-6040-4abc-8473-a56667167668 5a31cc572dafba9c5fa87bb3eb01fa53 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor CPT0225900006 95344601-8d6d-4b58-b23c-2482f039b375_wxs_gdc_realn.bam 37857968182 BAM harmonized CPTAC3 b2c86b4b-863d-404c-a883-76d1abac071c 620d51edc5d1a2bb815a916b9151fc09 {"aliquot_tag": "ALQ_e840ab6c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03450.MethArray.Green.A C3N-03450 GBM Methylation_Array tissue_normal CPT0405020008 205555390176_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 02525a6c-2a58-4f70-8f60-85830a087f06 a98e2a1afb45d65b0583efe2db565eb9 {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.MethArray.Red.A C3N-03450 GBM Methylation_Array tissue_normal CPT0405020008 205555390176_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 5c22a10c-66de-4495-869b-009f24631542 fb62472ac967fe7df6c574ef1ff34c6a {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.miRNA-Seq.A.hg38 C3N-03450 GBM miRNA-Seq tissue_normal CPT0405020011 862a48ba-3668-49f2-b179-334cb7943742_mirnaseq_gdc_realn.bam 274951978 BAM harmonized CPTAC3 9045da98-68c0-48dc-bac4-aa656956a136 2292473f0135ce568adbb89b1ceb5070 {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.miRNA-Seq.S38_L005_R1.A C3N-03450 GBM miRNA-Seq tissue_normal CPT0405020011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCCCGA_S38_L005_R1_001.unaln.bam 256334598 BAM S38_L005_R1 submitted_unaligned CPTAC3 d2b8b521-7e0c-42d6-a8e2-c43bdd7d1c56 69691bed2249a38919ca3a963cfebd41 {"aliquot_tag": "ALQ_3cf73d1", "sample": "S38", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.RNA-Seq.chimeric.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.chimeric.gdc_realn.bam 332427868 BAM chimeric harmonized CPTAC3 bbf38c9c-8d71-4398-a707-a6dbfa8a6ce1 c922f38bbf10cf1b68703e806e81b85a {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.RNA-Seq.genomic.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.genomic.gdc_realn.bam 8170300984 BAM genomic harmonized CPTAC3 d3d499c6-ea9b-4b21-ac90-e9b702caef84 fceea54fd137ba677693c4700284051a {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.RNA-Seq.S16_L004_R1.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 81a63cde-b0d0-40d8-bd21-4ac99c45f504 2d11f9f036bddf4e4561edcc4a4ece93 {"aliquot_tag": "ALQ_3cf73d1", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.RNA-Seq.S16_L004_R2.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 d26762d9-9ed0-4411-85a1-8a6ecfa904a0 99f90c343e5a58fbfdffe3b13f207ab5 {"aliquot_tag": "ALQ_3cf73d1", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.RNA-Seq.transcriptome.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.transcriptome.gdc_realn.bam 9261744425 BAM transcriptome harmonized CPTAC3 c13bc37a-77f0-49e1-b8a8-f17f31ca5937 9dadb23e87050705e5033e76a7ba238e {"aliquot_tag": "ALQ_3cf73d1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.WXS.A C3N-03450 GBM WXS tissue_normal CPT0405020008 CPT0405020008.WholeExome.RP-1303.bam 22154672056 BAM submitted_aligned CPTAC3 7498e01b-ef12-4dee-99a0-ab79f64e0119 1f933140b7b02d898638a8279e35d057 {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03450.WXS.A.hg38 C3N-03450 GBM WXS tissue_normal CPT0405020008 ef8782dc-a720-4655-beda-b3b3e47c0772_wxs_gdc_realn.bam 30755140808 BAM harmonized CPTAC3 fddeeebd-f11f-4532-bc45-1a948cac1499 c68e939a32e7f1df5150323f7a69be7c {"aliquot_tag": "ALQ_6308fa34", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-03452.MethArray.Green.T C3N-03452 GBM Methylation_Array tumor CPT0225960006 204372030076_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 bc8ab5ba-51f4-4ff2-9616-8708f899897e 3b21f01780991f8a065b8b6b2eee2574 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.MethArray.Red.T C3N-03452 GBM Methylation_Array tumor CPT0225960006 204372030076_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 8e4a41b8-214c-475b-b807-329b14932312 cedfee86c5e2ea8066655cbd30a67eba {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.miRNA-Seq.A.hg38 C3N-03452 GBM miRNA-Seq tissue_normal CPT0405170011 222a1db8-6a56-40a4-824d-93c65e620b7c_mirnaseq_gdc_realn.bam 463966780 BAM harmonized CPTAC3 419627a1-8834-4ca4-8d33-b16b8097cf2d efc540d033bd4ade3cb6dc03b7e38e63 {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.miRNA-Seq.S37_L008_R1.T C3N-03452 GBM miRNA-Seq tumor CPT0225960013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGGAAT_S37_L008_R1_001.unaln.bam 550754421 BAM S37_L008_R1 submitted_unaligned CPTAC3 414331cd-a344-4884-b014-b3a7e7a3d082 5eaabd04c5e6fad466731b1c452b2bb5 {"aliquot_tag": "ALQ_e719b02", "sample": "S37", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.miRNA-Seq.S39_L005_R1.A C3N-03452 GBM miRNA-Seq tissue_normal CPT0405170011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCGAAG_S39_L005_R1_001.unaln.bam 419837604 BAM S39_L005_R1 submitted_unaligned CPTAC3 1397533b-5753-41d0-b907-ae1a3166f07e 3fc014cf0f0afbd510c37c1280e20b3c {"aliquot_tag": "ALQ_732f04", "sample": "S39", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.miRNA-Seq.T.hg38 C3N-03452 GBM miRNA-Seq tumor CPT0225960013 43f66e46-99a8-446a-ae78-9fdd0d0e5b4d_mirnaseq_gdc_realn.bam 608275622 BAM harmonized CPTAC3 44aafc75-b3f5-4fff-b65f-c8119d490480 ba1efe868bcb2b37710b3f8f15a54e00 {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.RNA-Seq.chimeric.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.chimeric.gdc_realn.bam 565072800 BAM chimeric harmonized CPTAC3 7dd13965-d725-479e-a677-2d23d62a4bea 5a3b315a09e3612652103932c33df224 {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.RNA-Seq.chimeric.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.chimeric.gdc_realn.bam 36351452 BAM chimeric harmonized CPTAC3 bbc78eb7-e149-4bc6-9119-26ad006bb79e 121dc7fe3b4fd5a6ac8e64ba9b9205dc {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.RNA-Seq.genomic.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.genomic.gdc_realn.bam 10990858822 BAM genomic harmonized CPTAC3 110b1509-b14a-4783-abd1-c8da615a301b 05dd02a168c1c76e8fa7aa49c2a2dd6c {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.RNA-Seq.genomic.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.genomic.gdc_realn.bam 8863092903 BAM genomic harmonized CPTAC3 7e7c1a8b-1673-4d45-aa5a-3f456c9f2eec 906074ed05d89e531e3fb44b26c0b710 {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.RNA-Seq.S15_L004_R1.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 bcb5374d-d91f-4617-9a0b-33efb9238a3f e0a81f77e3650dda5d720b648bab8bf4 {"aliquot_tag": "ALQ_e719b02", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.RNA-Seq.S15_L004_R2.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 97c74b84f8570811e77ebd4bf33662bd {"aliquot_tag": "ALQ_e719b02", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.RNA-Seq.S9_L003_R1.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 0556e930-1904-4780-bf80-cdfba5c577b7 0d1ba4b879fe690597ca4d5dad28c105 {"aliquot_tag": "ALQ_732f04", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.RNA-Seq.S9_L003_R2.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 c582f341-273b-490f-9e51-725a98439835 d529cf707545470193394c0d11e8b02d {"aliquot_tag": "ALQ_732f04", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.RNA-Seq.transcriptome.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.transcriptome.gdc_realn.bam 12657134542 BAM transcriptome harmonized CPTAC3 b7eeccde-2059-47ca-a581-8046e7f2bf24 cdcf785fcab621107ddf9f14adff4ad0 {"aliquot_tag": "ALQ_732f04", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.RNA-Seq.transcriptome.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.transcriptome.gdc_realn.bam 9890880373 BAM transcriptome harmonized CPTAC3 76a0988d-9708-4c9e-bea2-f33194659a35 1d14989f417ee008299933c051c9c846 {"aliquot_tag": "ALQ_e719b02", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.WGS.N C3N-03452 GBM WGS blood_normal CPT0225980002 CPT0225980002.WholeGenome.RP-2158.bam 22971225120 BAM submitted_aligned CPTAC3 68708734-7e8f-4ab9-88bb-310161053f46 fce54004bf972fdcd867e312b954dd2e {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03452.WGS.N.hg38 C3N-03452 GBM WGS blood_normal CPT0225980002 3d82230b-c081-4c11-9e1f-aed013981520_wgs_gdc_realn.bam 68800975416 BAM harmonized CPTAC3 cd7df227-d920-4949-8ab7-191412252216 4f4f27e2b036896d32d61b21a4ece33c {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03452.WGS.T C3N-03452 GBM WGS tumor CPT0225960006 CPT0225960006.WholeGenome.RP-2158.bam 28423091199 BAM submitted_aligned CPTAC3 1c720dd8-6b46-4f2f-a8a2-603d62919edf 07408cbcfd520563687e50048c7991f2 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.WGS.T.hg38 C3N-03452 GBM WGS tumor CPT0225960006 c2109dc6-60b3-4bbe-b997-c781791a92c2_wgs_gdc_realn.bam 80891834156 BAM harmonized CPTAC3 285e6dc0-38fe-4ca5-a01c-d4ea82565353 eebaa2495a49ff880a2d89e04eea7897 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.WXS.A C3N-03452 GBM WXS tissue_normal CPT0405170007 CPT0405170007.WholeExome.RP-1303.bam 29785107966 BAM submitted_aligned CPTAC3 85461ad1-223c-4001-b20f-2e1046f69e0c 9c6c1bf56facbbabf0d0af77c9df65d9 {"aliquot_tag": "ALQ_f00bbb70", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03452.WXS.A.hg38 C3N-03452 GBM WXS tissue_normal CPT0405170007 c8b69625-dc76-479e-a092-44803759e648_wxs_gdc_realn.bam 40848147125 BAM harmonized CPTAC3 852d9345-0a27-41a1-b83a-e25e2bf16e18 dece18a32b98d2aca8e69f85775c7f67 {"aliquot_tag": "ALQ_f00bbb70", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-03452.WXS.N C3N-03452 GBM WXS blood_normal CPT0225980002 CPT0225980002.WholeExome.RP-1303.bam 22176413678 BAM submitted_aligned CPTAC3 58d9dc12-c34c-4698-b5f3-c3f0feb17aaf a550ab37b09fd9a08c96fc532b0a9076 {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03452.WXS.N.hg38 C3N-03452 GBM WXS blood_normal CPT0225980002 3d82230b-c081-4c11-9e1f-aed013981520_wxs_gdc_realn.bam 29962435389 BAM harmonized CPTAC3 72713898-819e-4775-b6e7-8e81a8d14e9e eb94edc5469aa92a993f70a7b0d785c2 {"aliquot_tag": "ALQ_df5d24b4", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03452.WXS.T C3N-03452 GBM WXS tumor CPT0225960006 CPT0225960006.WholeExome.RP-1303.bam 22236745714 BAM submitted_aligned CPTAC3 24342f75-a181-44f5-8cbc-d85dd5e52dd7 0dff0b2e53bb774a6483acd19ef4c87e {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03452.WXS.T.hg38 C3N-03452 GBM WXS tumor CPT0225960006 c2109dc6-60b3-4bbe-b997-c781791a92c2_wxs_gdc_realn.bam 31266490554 BAM harmonized CPTAC3 fa9af05c-4ced-4641-9f5d-5b425c0008f2 3c210a850747265056e6f41274cefc65 {"aliquot_tag": "ALQ_67005ecc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.MethArray.Green.T C3N-03453 GBM Methylation_Array tumor CPT0225990006 204372030074_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 23b4f85c-7359-4026-aaa6-d21609c3e13f 5d78a25fb26c698d919e87aa7d0c33e4 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.MethArray.Red.T C3N-03453 GBM Methylation_Array tumor CPT0225990006 204372030074_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 efbbbef3-a8fd-412f-9c08-0c0fd72ea9b5 8db90441f98f19fff5bef6c25fb29ee1 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.miRNA-Seq.S47_L002_R1.T C3N-03453 GBM miRNA-Seq tumor CPT0225990009 200403_UNC31-K00269_0274_AHCF7GBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 223237672 BAM S47_L002_R1 submitted_unaligned CPTAC3 6217d0df-86ef-4370-83b8-14a0cbb79c93 e021dda425a7f1253dfd46b062384f68 {"aliquot_tag": "ALQ_75efd48c", "sample": "S47", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.miRNA-Seq.T.hg38 C3N-03453 GBM miRNA-Seq tumor CPT0225990009 31f7f397-5252-408c-9d42-f5b47fb792a2_mirnaseq_gdc_realn.bam 251493832 BAM harmonized CPTAC3 934da61a-31c6-4721-b765-fa396d4d6fb9 d43bef71ce179990a5cb07ebb01a937a {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.RNA-Seq.chimeric.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.chimeric.gdc_realn.bam 30638775 BAM chimeric harmonized CPTAC3 907291f4-a335-4e75-82cd-806b2861c583 bdf81043a5d92b8b22c0edda9dbd3186 {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.RNA-Seq.genomic.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.genomic.gdc_realn.bam 7273227313 BAM genomic harmonized CPTAC3 e710115f-f3c4-413d-a74b-094c0ff42b29 d7483e96beb0ad86d99bfc145b9e6791 {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.RNA-Seq.S15_L004_R1.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 a3a1d4f8-d8b2-4e47-be49-bfd4d235448f 079d99c882bd6b518f785c2443b2f67d {"aliquot_tag": "ALQ_75efd48c", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.RNA-Seq.S15_L004_R2.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 d643ac36-a2be-46bd-bcf4-eac66dfe9253 4c3cc69b20daee63f04557ea5545831d {"aliquot_tag": "ALQ_75efd48c", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.RNA-Seq.transcriptome.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.transcriptome.gdc_realn.bam 7785020997 BAM transcriptome harmonized CPTAC3 5c112587-aacb-4c44-af44-44b548d602df 8ce21ac5fd3102b372e0bb8a38837ae5 {"aliquot_tag": "ALQ_75efd48c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.WGS.N C3N-03453 GBM WGS blood_normal CPT0226010002 CPT0226010002.WholeGenome.RP-2158.bam 22150234243 BAM submitted_aligned CPTAC3 684bad64-e371-4a9d-8370-e390a5d037fc d34c8ba3d9adb274621976f47cd2df08 {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03453.WGS.N.hg38 C3N-03453 GBM WGS blood_normal CPT0226010002 883e62e0-05c1-4b41-9315-d32aa83e8990_wgs_gdc_realn.bam 66079008259 BAM harmonized CPTAC3 668c831a-265b-418f-8444-303ea0d612f0 ada18c68aa85826a9007bd0e69d171dc {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03453.WGS.T C3N-03453 GBM WGS tumor CPT0225990006 CPT0225990006.WholeGenome.RP-2158.bam 21511984237 BAM submitted_aligned CPTAC3 67e71faf-078b-4b6b-881c-7411be49f4c9 eb0027bbb09bbec77ee849d56c6a43dd {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.WGS.T.hg38 C3N-03453 GBM WGS tumor CPT0225990006 bce376c8-06f6-4242-a32b-9488f7f4eb82_wgs_gdc_realn.bam 60130960553 BAM harmonized CPTAC3 3ab79ed1-6153-4d61-82c9-191f5573df89 233dfc960658ac299372f971aec70c97 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.WXS.N C3N-03453 GBM WXS blood_normal CPT0226010002 CPT0226010002.WholeExome.RP-1303.bam 25670725042 BAM submitted_aligned CPTAC3 1f9e6366-516d-4bb4-993f-cc7a657b9dba 300093c8e1173ca510b5c8dc0a447f61 {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03453.WXS.N.hg38 C3N-03453 GBM WXS blood_normal CPT0226010002 883e62e0-05c1-4b41-9315-d32aa83e8990_wxs_gdc_realn.bam 35687539170 BAM harmonized CPTAC3 fbef702e-4c4b-439b-84df-4f17c09b025d 4a36250ebca4f6d065d0e5f74f8a76e4 {"aliquot_tag": "ALQ_c4aa0d90", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03453.WXS.T C3N-03453 GBM WXS tumor CPT0225990006 CPT0225990006.WholeExome.RP-1303.bam 26650952812 BAM submitted_aligned CPTAC3 3e7c70a6-be10-4a69-9f83-8ef515a0d505 64f04855554e54533ea8017654057f18 {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03453.WXS.T.hg38 C3N-03453 GBM WXS tumor CPT0225990006 bce376c8-06f6-4242-a32b-9488f7f4eb82_wxs_gdc_realn.bam 36876819652 BAM harmonized CPTAC3 c8b4ef77-12ec-4266-a6f6-178327ea0fd0 0088c803eaa74fc93abbd296996a3cea {"aliquot_tag": "ALQ_e550c91d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03456.MethArray.Green.T C3N-03456 HNSCC Methylation_Array tumor CPT0246590006 203220070165_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4088662d-239a-45c8-87e2-972656a71861 72e792156e1c566b6c0bc9b28aabad1e {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.MethArray.Red.T C3N-03456 HNSCC Methylation_Array tumor CPT0246590006 203220070165_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 d3874dd0-6897-4958-a84f-6ace645aaa99 997d0aa8d06e71cefcffd244d3264f6d {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.miRNA-Seq.S47_L007_R1.T C3N-03456 HNSCC miRNA-Seq tumor CPT0246590009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L007_R1_001.unaln.bam 164485506 BAM S47_L007_R1 submitted_unaligned CPTAC3 b778c9a0-444f-401f-874d-b7b0a7d19561 5a072745d88998827c4ae55cf85d6c73 {"aliquot_tag": "ALQ_f5aa07ed", "sample": "S47", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.miRNA-Seq.T.hg38 C3N-03456 HNSCC miRNA-Seq tumor CPT0246590009 486470c4-9376-4bd6-b49a-79331c742a1d_mirnaseq_gdc_realn.bam 186279149 BAM harmonized CPTAC3 b1f3be00-2c7c-4a52-8487-48b3bfa447f1 9fd0e85bf8d337e141886e8f40607538 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.chimeric.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.chimeric.gdc_realn.bam 35001821 BAM chimeric harmonized CPTAC3 66bbc23a-ff92-47d2-90ae-05ac4a3fc1a1 d0f5d8c99b7b55644fcf24d24016a025 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.chimeric.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.chimeric.gdc_realn.bam 186625232 BAM chimeric harmonized CPTAC3 49ae5a04-96e1-4fe1-8277-b267649cbe1b e5640e56333e49beef81364bf99593c4 {"aliquot_tag": "ALQ_a2d09988", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.genomic.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.genomic.gdc_realn.bam 9820755619 BAM genomic harmonized CPTAC3 dc6ebbe0-caaf-405e-b281-13b6b909aa59 53decffc3a36c41b7fe64a951cf60816 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.genomic.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.genomic.gdc_realn.bam 11418276490 BAM genomic harmonized CPTAC3 6d2c0116-094e-4b83-be25-20108e59cbb6 5751b54e2c146c7c65e1c267323c117a {"aliquot_tag": "ALQ_a2d09988", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.S21_L006_R1.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4617184550 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 6085a9b1-f8e8-4e81-ba00-08c1af1349ac d132cf9292feb803e63ed9bb81a39731 {"aliquot_tag": "ALQ_f5aa07ed", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.S21_L006_R2.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 5265494179 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 5c8b2f32-7a81-4d56-9858-3807d2936aeb be672979bdf42b2f83aad24d32f8ca4a {"aliquot_tag": "ALQ_f5aa07ed", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.S42_R1.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R1_001.fastq.gz 6182276232 FASTQ S42_R1 submitted_unaligned CPTAC3 64dc83e5-eee7-4133-b485-c7f306d12a54 3b0ce3f67aa53d434e457fa3ef44e64a {"aliquot_tag": "ALQ_a2d09988", "sample": "S42", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.S42_R2.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R2_001.fastq.gz 6412251487 FASTQ S42_R2 submitted_unaligned CPTAC3 fa4b3bd0-d77d-4d69-8dd4-2e9daea25b3b 672dea212b235b94face9b63836e8a5f {"aliquot_tag": "ALQ_a2d09988", "sample": "S42", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.transcriptome.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.transcriptome.gdc_realn.bam 12325674557 BAM transcriptome harmonized CPTAC3 c2bd6155-14b0-4b1e-b741-f31b9679eeeb 3df3a6630a4c84201fd6800f7d02e6c7 {"aliquot_tag": "ALQ_f5aa07ed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.RNA-Seq.transcriptome.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.transcriptome.gdc_realn.bam 6282617376 BAM transcriptome harmonized CPTAC3 890b2c8f-d5e8-4b75-ad3b-8f194bc70537 85cc14ebc62474e3449a08d03188fe62 {"aliquot_tag": "ALQ_a2d09988", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.WGS.N C3N-03456 HNSCC WGS blood_normal CPT0246610002 CPT0246610002.WholeGenome.RP-1303.bam 58166684155 BAM submitted_aligned CPTAC3 935cc056-bf48-4b8d-b2b1-a8d5ecac6f23 49cbaaf420a7e84893eea95b7fbc3436 {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03456.WGS.N.hg38 C3N-03456 HNSCC WGS blood_normal CPT0246610002 055a4b03-332d-40b4-ac7e-eb2e3b16fa1d_wgs_gdc_realn.bam 85813441679 BAM harmonized CPTAC3 447c307a-c8bd-45ef-aaac-b7c10fa8b9e8 6190075a90bc067f28fab249a9d56ed9 {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03456.WGS.T C3N-03456 HNSCC WGS tumor CPT0246590006 CPT0246590006.WholeGenome.RP-1303.bam 66859792967 BAM submitted_aligned CPTAC3 e960e706-54ac-4fb9-a67d-c9fc9587c0cf edfdf3eaa1a1c9813116f12aeb4f6746 {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.WGS.T.hg38 C3N-03456 HNSCC WGS tumor CPT0246590006 62e37b70-37a3-4ffd-a5b7-df6b75dedd16_wgs_gdc_realn.bam 97145742159 BAM harmonized CPTAC3 117f1ac9-604f-4717-801a-ccc39b529b79 1c1675bce456e4a87c3a6f1337c0558d {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.WXS.N C3N-03456 HNSCC WXS blood_normal CPT0246610002 CPT0246610002.WholeExome.RP-1303.bam 24406159610 BAM submitted_aligned CPTAC3 39f2751a-afcb-46da-b715-8b154519ae54 3fbb22e1af596c450c464efa62ca5072 {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03456.WXS.N.hg38 C3N-03456 HNSCC WXS blood_normal CPT0246610002 055a4b03-332d-40b4-ac7e-eb2e3b16fa1d_wxs_gdc_realn.bam 33933178321 BAM harmonized CPTAC3 6b489bea-2192-48d0-a36e-b9a10f6cfad6 f7c20cd389d68931aaff4ba121cb31ec {"aliquot_tag": "ALQ_d49ce70a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03456.WXS.T C3N-03456 HNSCC WXS tumor CPT0246590006 CPT0246590006.WholeExome.RP-1303.bam 24092361978 BAM submitted_aligned CPTAC3 b6e7f577-d94d-4860-8839-2f30afecd9fa 432c7b10967bb8f76cd3adbdacd3a413 {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03456.WXS.T.hg38 C3N-03456 HNSCC WXS tumor CPT0246590006 62e37b70-37a3-4ffd-a5b7-df6b75dedd16_wxs_gdc_realn.bam 33433664540 BAM harmonized CPTAC3 45e87e7c-2758-45f6-a42f-3199e5f2c846 5f2749b256348c0b08bf468a2e1387d1 {"aliquot_tag": "ALQ_65151a7c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.MethArray.Green.T C3N-03457 HNSCC Methylation_Array tumor CPT0246620006 203271750057_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 1ae9b99a-20db-42bb-ba2e-1205e0c26bc3 15cdace7f58a2dc70a197556492bb307 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.MethArray.Red.T C3N-03457 HNSCC Methylation_Array tumor CPT0246620006 203271750057_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 637871b5-06fc-423b-a201-fba8c2c843fb 1faff30336af14057a6958daeb12604b {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.miRNA-Seq.S48_L007_R1.T C3N-03457 HNSCC miRNA-Seq tumor CPT0246620009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGGCA_S48_L007_R1_001.unaln.bam 227965242 BAM S48_L007_R1 submitted_unaligned CPTAC3 31f2163e-fdff-4bff-bab8-4d8564b9a2c8 aab960e4f3b19bda51afbea3dd498dee {"aliquot_tag": "ALQ_4ee4452", "sample": "S48", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.miRNA-Seq.T.hg38 C3N-03457 HNSCC miRNA-Seq tumor CPT0246620009 00aae4f8-a1e3-4267-8fc2-fa3d65da7eed_mirnaseq_gdc_realn.bam 256784656 BAM harmonized CPTAC3 0cdff7b3-a296-43a9-bf1e-1dfd8c744328 41c4bfd9c1245d31bdacbef19b8b0b75 {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.RNA-Seq.chimeric.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.chimeric.gdc_realn.bam 30504430 BAM chimeric harmonized CPTAC3 eb61e4f5-0799-4c58-8533-a79d2a353fa0 8fb081168cb01f1a5d83f2b5ae4a7bd7 {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.RNA-Seq.genomic.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.genomic.gdc_realn.bam 8771237936 BAM genomic harmonized CPTAC3 80059542-75d4-422e-8709-8a666cb31296 7bbea65952d26a8a2b71d1d6c6b34e97 {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.RNA-Seq.S24_L006_R1.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3748215230 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 f7af8364-202b-466a-b987-dcbc6df0dec0 0cccbc147fc0ef89287bd22b8b72d8ac {"aliquot_tag": "ALQ_4ee4452", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.RNA-Seq.S24_L006_R2.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 4399821792 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 1b5893e7-fe61-4378-8ca9-12d8ef625be6 c30057e7644bdb7dcae35372f5776dd9 {"aliquot_tag": "ALQ_4ee4452", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.RNA-Seq.transcriptome.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.transcriptome.gdc_realn.bam 9839170819 BAM transcriptome harmonized CPTAC3 ccc6dafb-2ae6-4b62-a5ea-f5e2335b61f7 ab55212916dc912125551999bfbaa8ed {"aliquot_tag": "ALQ_4ee4452", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.WGS.N C3N-03457 HNSCC WGS blood_normal CPT0246660002 CPT0246660002.WholeGenome.RP-1303.bam 69172588605 BAM submitted_aligned CPTAC3 5872afd7-a53c-4b24-ba62-7603baf1a162 75967ac760604750227b28b37613556b {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03457.WGS.N.hg38 C3N-03457 HNSCC WGS blood_normal CPT0246660002 782f1f40-ac9f-4746-9394-6fbbedbbd497_wgs_gdc_realn.bam 100076827056 BAM harmonized CPTAC3 1ed44b0b-1953-4fd4-9277-ff6cefa026b6 46688d6b5a8ed4a78f23d99284155f26 {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03457.WGS.T C3N-03457 HNSCC WGS tumor CPT0246620006 CPT0246620006.WholeGenome.RP-1303.bam 76024676952 BAM submitted_aligned CPTAC3 8360929a-3660-4f06-8a26-a045b7d866c3 d192d8b6fb7831e82e780ad3cca9f1c6 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.WGS.T.hg38 C3N-03457 HNSCC WGS tumor CPT0246620006 89ddab47-0889-4961-a2ef-3fd457b12f13_wgs_gdc_realn.bam 111436178743 BAM harmonized CPTAC3 7667ccbe-cba6-4af4-9d59-ff1fb5c1a577 8ab810f11f2c21a13302df909b66c4f2 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.WXS.N C3N-03457 HNSCC WXS blood_normal CPT0246660002 CPT0246660002.WholeExome.RP-1303.bam 22976599508 BAM submitted_aligned CPTAC3 cbfda6ff-aefe-4d4b-9afb-1ef035bb58ff eae499d1f2b376423d1fcafe6b79ddfc {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03457.WXS.N.hg38 C3N-03457 HNSCC WXS blood_normal CPT0246660002 782f1f40-ac9f-4746-9394-6fbbedbbd497_wxs_gdc_realn.bam 31748767184 BAM harmonized CPTAC3 c7aabc26-8d4f-494f-a28c-7709a79cf2c6 a7a2242838d134386cbdcd81912f834f {"aliquot_tag": "ALQ_66bc3b1a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03457.WXS.T C3N-03457 HNSCC WXS tumor CPT0246620006 CPT0246620006.WholeExome.RP-1303.bam 23244514198 BAM submitted_aligned CPTAC3 bd032d7f-9254-485d-8d84-144d9e874acb 25ebafe99ebef5214878d5036b2a16f6 {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03457.WXS.T.hg38 C3N-03457 HNSCC WXS tumor CPT0246620006 89ddab47-0889-4961-a2ef-3fd457b12f13_wxs_gdc_realn.bam 31518114519 BAM harmonized CPTAC3 157330db-124b-453b-ba1a-d686b190028a b4b85b6480c3ae0ee068f4bfc70231ac {"aliquot_tag": "ALQ_945159c3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.MethArray.Green.T C3N-03458 HNSCC Methylation_Array tumor CPT0246670006 203219650047_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 82f7f965-a69b-4f9a-b03c-5943ddd893d0 812da419a76529b309d2c508aef20fa2 {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.MethArray.Red.T C3N-03458 HNSCC Methylation_Array tumor CPT0246670006 203219650047_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 0a93943e-259e-4faf-8463-d047ccacc27b 6d0f5d22d90acfd5162065a93e5c3c8b {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.miRNA-Seq.S138_L008_R1.T C3N-03458 HNSCC miRNA-Seq tumor CPT0246670009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATCACG_S138_L008_R1_001.unaln.bam 331841482 BAM S138_L008_R1 submitted_unaligned CPTAC3 c258fa3a-534f-4227-b953-17e4c822dda0 0bc041eeec670f547572cc7e8e502812 {"aliquot_tag": "ALQ_cc0ecb22", "sample": "S138", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.miRNA-Seq.T.hg38 C3N-03458 HNSCC miRNA-Seq tumor CPT0246670009 399432c2-1352-4506-87a4-17cf3855b284_mirnaseq_gdc_realn.bam 362078155 BAM harmonized CPTAC3 eecec5ca-bf3c-4a73-ab36-ca63704b3ad0 e479d4e3a314b2a077dda71c8624373b {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.RNA-Seq.chimeric.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.chimeric.gdc_realn.bam 23496198 BAM chimeric harmonized CPTAC3 7a679e02-355b-403d-b418-43b6f033037a 00232c39697f2f5adf63095707a8e92c {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.RNA-Seq.genomic.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.genomic.gdc_realn.bam 6970501903 BAM genomic harmonized CPTAC3 80bc30c7-15e5-4cdc-976f-ba4bd71d01db 7b6b0f6f3af072999e406feb09c16b5b {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.RNA-Seq.S46_L008_R1.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R1_001.fastq.gz 3395284766 FASTQ S46_L008_R1 submitted_unaligned CPTAC3 47bc105c-a6cc-4b35-bfef-3332376921aa c4c55ab0554e6bf1be0765439d966ed1 {"aliquot_tag": "ALQ_cc0ecb22", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.RNA-Seq.S46_L008_R2.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R2_001.fastq.gz 3766041512 FASTQ S46_L008_R2 submitted_unaligned CPTAC3 cd09e850-f5ef-483a-9508-981fe9bf29d4 a5bc971d52722f95bb226957775de659 {"aliquot_tag": "ALQ_cc0ecb22", "sample": "S46", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.RNA-Seq.transcriptome.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.transcriptome.gdc_realn.bam 10688708421 BAM transcriptome harmonized CPTAC3 8832b0a1-9947-4ae7-83c1-b028ead9afa9 cf133e4004d26d26622e4c7da121c3ef {"aliquot_tag": "ALQ_cc0ecb22", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.WGS.N C3N-03458 HNSCC WGS blood_normal CPT0246710002 CPT0246710002.WholeGenome.RP-1303.bam 66045519817 BAM submitted_aligned CPTAC3 dc9950a2-7958-4ad1-9f20-afaa95c71543 374d1586876fc23f648861214b9a6c27 {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03458.WGS.N.hg38 C3N-03458 HNSCC WGS blood_normal CPT0246710002 dfd8f485-55b8-4973-9abb-f79f190eddb3_wgs_gdc_realn.bam 96138335271 BAM harmonized CPTAC3 32e5ae7d-3837-4869-91fd-3b2d8fe81e47 92f90bdbd312c5716be7cc52584803ee {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03458.WGS.T C3N-03458 HNSCC WGS tumor CPT0246670006 CPT0246670006.WholeGenome.RP-1303.bam 67558830662 BAM submitted_aligned CPTAC3 8290ad14-2418-48bb-b2b7-e5e83a4d8c2e 569c1ca436910ae50a10e844ebd2efb4 {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.WGS.T.hg38 C3N-03458 HNSCC WGS tumor CPT0246670006 65378d04-9290-4314-80ef-7fa63d18b0dc_wgs_gdc_realn.bam 100007528435 BAM harmonized CPTAC3 8987d7e9-7966-4572-b5a0-171ba7140299 31b62210bf82aaf11aa89f9ab31e8ffe {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.WXS.N C3N-03458 HNSCC WXS blood_normal CPT0246710002 CPT0246710002.WholeExome.RP-1303.bam 23056985812 BAM submitted_aligned CPTAC3 210334df-abfc-4400-9ec8-268af19e6f89 24f6170c5b5806f7ae2374e3b8b3678b {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03458.WXS.N.hg38 C3N-03458 HNSCC WXS blood_normal CPT0246710002 dfd8f485-55b8-4973-9abb-f79f190eddb3_wxs_gdc_realn.bam 32044180290 BAM harmonized CPTAC3 020efae6-7be3-43a3-9e6a-2b51324b1098 36853b50904c9da275cb23a5a88ec2f6 {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03458.WXS.T C3N-03458 HNSCC WXS tumor CPT0246670006 CPT0246670006.WholeExome.RP-1303.bam 25574510496 BAM submitted_aligned CPTAC3 f62766ec-5d2c-4b87-8c0c-d992490468b8 749ceb07d8fc3ea49f112b4d8d54f5cc {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03458.WXS.T.hg38 C3N-03458 HNSCC WXS tumor CPT0246670006 65378d04-9290-4314-80ef-7fa63d18b0dc_wxs_gdc_realn.bam 35724000491 BAM harmonized CPTAC3 baad83c2-5991-4892-8503-d1b8a2f142eb 18a06aaff7e587bb4549de9d66cebcaf {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.MethArray.Green.T C3N-03473 GBM Methylation_Array tumor CPT0207090009 203220070156_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e9e45a65-cf58-4c9a-9c52-6fa08957ae05 a174b16122b6a709de828e15d6364017 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.MethArray.Red.T C3N-03473 GBM Methylation_Array tumor CPT0207090009 203220070156_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 050debbd-3a69-4934-b17e-287ec39afaec 7a9ccd9666e8873603c2f4044ce85176 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.miRNA-Seq.S17_L008_R1.T C3N-03473 GBM miRNA-Seq tumor CPT0207090013 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L008_R1_001.unaln.bam 291905505 BAM S17_L008_R1 submitted_unaligned CPTAC3 862a751e-660a-4e52-b883-a75db29c282f 6fe2e09f4ed3613360ee0aba814a0593 {"aliquot_tag": "ALQ_7e944b4f", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.miRNA-Seq.T.hg38 C3N-03473 GBM miRNA-Seq tumor CPT0207090013 90374924-d0c7-4af0-a381-c7eae572c0f7_mirnaseq_gdc_realn.bam 328145277 BAM harmonized CPTAC3 b0b694b2-1706-4210-9a09-e24b4a8436b0 7bab682da603e55ba5132d461152ba97 {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.RNA-Seq.chimeric.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.chimeric.gdc_realn.bam 43292689 BAM chimeric harmonized CPTAC3 81f3694c-aa79-4eda-a3c8-78583f676a39 7172089730f41ea0a96366a18e26917e {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.RNA-Seq.genomic.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.genomic.gdc_realn.bam 7262570903 BAM genomic harmonized CPTAC3 b22810fd-6f7a-4fd6-a053-48c78f5ed8d5 0b687fe47d80cf0ad0422f59b9c4fe32 {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.RNA-Seq.S4_L005_R1.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R1_001.fastq.gz 3530475490 FASTQ S4_L005_R1 submitted_unaligned CPTAC3 4bd3819d-93da-4567-928b-f5927ac9e1d4 2790e589d9d98a1f10cbfe140ef63176 {"aliquot_tag": "ALQ_7e944b4f", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.RNA-Seq.S4_L005_R2.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R2_001.fastq.gz 3668610618 FASTQ S4_L005_R2 submitted_unaligned CPTAC3 47023c29-a0d9-44e4-9ee0-c508be560e14 2d01c9b451d54c8e1bab206b7cbec5f2 {"aliquot_tag": "ALQ_7e944b4f", "sample": "S4", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.RNA-Seq.transcriptome.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.transcriptome.gdc_realn.bam 8840394260 BAM transcriptome harmonized CPTAC3 c3abbcaf-c4a8-4883-9d3c-b5e7818152ea 41cc6d39e043f020288b63e1448567f7 {"aliquot_tag": "ALQ_7e944b4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.WGS.N C3N-03473 GBM WGS blood_normal CPT0207150002 CPT0207150002.WholeGenome.RP-1303.bam 89608667206 BAM submitted_aligned CPTAC3 1e0af5ee-49ae-4f50-ba39-2746bd64d86c 6a46748f7eb8b576c087890ca53a7042 {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03473.WGS.N.hg38 C3N-03473 GBM WGS blood_normal CPT0207150002 badc8643-2e9d-453d-aaaf-2b0d5e7c602d_wgs_gdc_realn.bam 135635714293 BAM harmonized CPTAC3 b7bfcf0c-933e-4354-baba-4ef357a7a93e 7aa7b18d1a622ae74df95397c552cf5a {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03473.WGS.T C3N-03473 GBM WGS tumor CPT0207090009 CPT0207090009.WholeGenome.RP-1303.bam 58921785117 BAM submitted_aligned CPTAC3 969686ba-3f58-4e2d-ae69-eaf430809a84 55fd12afd5189b9c43ebe42e3c434789 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.WGS.T.hg38 C3N-03473 GBM WGS tumor CPT0207090009 ddb69d52-0d77-4d38-89ff-5919f9e8df2e_wgs_gdc_realn.bam 89962842045 BAM harmonized CPTAC3 6e31eefe-0667-4ff6-9fe7-223db0466a72 b94f778763f4c2b821f705bbfe3b588b {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.WXS.N C3N-03473 GBM WXS blood_normal CPT0207150002 CPT0207150002.WholeExome.RP-1303.bam 24878089062 BAM submitted_aligned CPTAC3 f7bd9319-ad39-458b-a5f2-c14b05a75efa 2096c8b9a72c2dabd817bd8721fbad9f {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03473.WXS.N.hg38 C3N-03473 GBM WXS blood_normal CPT0207150002 badc8643-2e9d-453d-aaaf-2b0d5e7c602d_wxs_gdc_realn.bam 34322653573 BAM harmonized CPTAC3 64124d13-411c-4ac8-b0cf-cb0f66bdb020 67631bab0792f9196a712965f6c794e1 {"aliquot_tag": "ALQ_1e24743c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03473.WXS.T C3N-03473 GBM WXS tumor CPT0207090009 CPT0207090009.WholeExome.RP-1303.bam 20883728986 BAM submitted_aligned CPTAC3 fc7118e7-1b1c-4d52-8bf6-1d854c5b6489 477aeaba1831335bae2ebaeb230df629 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03473.WXS.T.hg38 C3N-03473 GBM WXS tumor CPT0207090009 ddb69d52-0d77-4d38-89ff-5919f9e8df2e_wxs_gdc_realn.bam 28623061235 BAM harmonized CPTAC3 907ec29c-c66c-416c-9a75-ad32f1520abe 75a4abe846242f5290b7259930778301 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03480.MethArray.Green.T C3N-03480 GBM Methylation_Array tumor CPT0285090006 204367470127_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 dcd47add-8068-4837-8af7-df2f3fc4b886 ac7a643d06d8ec150099d9192c9e015b {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.MethArray.Red.T C3N-03480 GBM Methylation_Array tumor CPT0285090006 204367470127_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 2bf886bd-d727-4cc4-aba6-d4389067e5b7 44517774a99c20c55c7932a4a0a98b74 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.miRNA-Seq.S8_L001_R1.T C3N-03480 GBM miRNA-Seq tumor CPT0285090009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACTCA_S8_L001_R1_001.unaln.bam 218234486 BAM S8_L001_R1 submitted_unaligned CPTAC3 6d08ac4e-9ef8-42f5-bd4b-e1ff48f71064 f4566f1a0a0c9299df660ae347f52059 {"aliquot_tag": "ALQ_c320998c", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.miRNA-Seq.T.hg38 C3N-03480 GBM miRNA-Seq tumor CPT0285090009 0ac9c4aa-8860-43ac-987e-ea5c74700679_mirnaseq_gdc_realn.bam 241747354 BAM harmonized CPTAC3 acf6192c-1d46-4746-a7fb-06f192c055ad b5a25a91ad10ad8b4dd31135171ecaa1 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.RNA-Seq.chimeric.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.chimeric.gdc_realn.bam 21609922 BAM chimeric harmonized CPTAC3 4ae5049f-0d45-487f-8e12-44d6d02a25a6 4bb5ff48f00de97c205002bb2ca03a70 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.RNA-Seq.genomic.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.genomic.gdc_realn.bam 5715243811 BAM genomic harmonized CPTAC3 30378aa4-b360-4fc5-baeb-c4b5f43ec26c 8bbbea4ca4794ed90708e8285d6c3e70 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.RNA-Seq.S24_L006_R1.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 f76e24bf-2452-4f99-8d37-8cbe2327cfbc 932e71315f55429ab7f6664487fe1235 {"aliquot_tag": "ALQ_c320998c", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.RNA-Seq.S24_L006_R2.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 4dc1a8c2-6c07-43e4-9901-b5885da43e33 8462769cb3622ada2925b32052e4721e {"aliquot_tag": "ALQ_c320998c", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.RNA-Seq.transcriptome.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.transcriptome.gdc_realn.bam 6301692350 BAM transcriptome harmonized CPTAC3 0b45a1f3-f1e2-4afd-950e-f0335bbc54d1 3d781d3435abe8547b292a87774db899 {"aliquot_tag": "ALQ_c320998c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.WGS.N C3N-03480 GBM WGS blood_normal CPT0285120002 CPT0285120002.WholeGenome.RP-2158.bam 22643381148 BAM submitted_aligned CPTAC3 106b7fd7-a720-49cb-9c8a-4bc96ff0ff72 dd734b7f0fbf58402388634782c5341b {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03480.WGS.N.hg38 C3N-03480 GBM WGS blood_normal CPT0285120002 8546651a-1f37-4289-8c55-d588c65768e2_wgs_gdc_realn.bam 69550902854 BAM harmonized CPTAC3 2e9debd8-9891-4238-bea9-3329317f7f86 3a72aae9d4bd8657aee2a1704a43d4d1 {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03480.WGS.T C3N-03480 GBM WGS tumor CPT0285090006 CPT0285090006.WholeGenome.RP-2158.bam 23801172742 BAM submitted_aligned CPTAC3 b08961ab-c5d2-4a32-8072-78e42d543d91 5d1096c6409612d8b6f437883c77d847 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.WGS.T.hg38 C3N-03480 GBM WGS tumor CPT0285090006 48422358-852c-4656-ae8a-0128e64c2c10_wgs_gdc_realn.bam 70954323517 BAM harmonized CPTAC3 ed1dba4a-0836-458e-add2-86f0bae54d89 15ab58f8d3cb693824a51e0f72fa9035 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.WXS.N C3N-03480 GBM WXS blood_normal CPT0285120002 CPT0285120002.WholeExome.RP-1303.bam 31013845954 BAM submitted_aligned CPTAC3 1e435f35-5da3-4a71-bb2b-093597145467 1f64425f59593f18fb4a524aa70ebd8a {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03480.WXS.N.hg38 C3N-03480 GBM WXS blood_normal CPT0285120002 8546651a-1f37-4289-8c55-d588c65768e2_wxs_gdc_realn.bam 42199263487 BAM harmonized CPTAC3 4fdb16b2-c34d-44b2-a6d9-cd660db8048a 07b2c0b5f1b44c2a3ba1ac2313d236f8 {"aliquot_tag": "ALQ_e87ea2b0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03480.WXS.T C3N-03480 GBM WXS tumor CPT0285090006 CPT0285090006.WholeExome.RP-1303.bam 28711739181 BAM submitted_aligned CPTAC3 e0db6a83-d137-4648-a861-3060e2ec26c7 fdd78aa36a9bdfaed2cc4a5df3caef24 {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03480.WXS.T.hg38 C3N-03480 GBM WXS tumor CPT0285090006 48422358-852c-4656-ae8a-0128e64c2c10_wxs_gdc_realn.bam 39810831362 BAM harmonized CPTAC3 802cd086-24f7-4a2e-9d26-1b5a574065a2 0eb447fe9d8fb50eda67c65efac7909f {"aliquot_tag": "ALQ_539f841d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.MethArray.Green.T C3N-03484 GBM Methylation_Array tumor CPT0285140006 204367490082_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b367671d-60d4-497f-9353-3477351580dd b3104c0ce9f6fe8311a00e4557a209f6 {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.MethArray.Red.T C3N-03484 GBM Methylation_Array tumor CPT0285140006 204367490082_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 b26e4c8c-e830-4c8a-a64a-fb25a223e253 94f01aa74732ae3cc37935509d154d7e {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.miRNA-Seq.S9_L001_R1.T C3N-03484 GBM miRNA-Seq tumor CPT0285140009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 182189713 BAM S9_L001_R1 submitted_unaligned CPTAC3 c2af4430-bc61-4c52-9467-3594592c364c 23683843adb24c2a85f7f30777c68cac {"aliquot_tag": "ALQ_f0ec8e98", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.miRNA-Seq.T.hg38 C3N-03484 GBM miRNA-Seq tumor CPT0285140009 386b1cd0-36e9-4c81-994f-1bf017803701_mirnaseq_gdc_realn.bam 208439388 BAM harmonized CPTAC3 bccef22b-a159-45a2-ab4f-e61e30f1938f 88383fb95ae40dc1c06614bd9480255e {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.RNA-Seq.chimeric.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.chimeric.gdc_realn.bam 24773061 BAM chimeric harmonized CPTAC3 4288fbe7-9490-4fd2-bbbc-be756229e19a 1fac73c45df6c4fa062eaf3dbfd55842 {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.RNA-Seq.genomic.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.genomic.gdc_realn.bam 6548116675 BAM genomic harmonized CPTAC3 49d8de3a-7a23-4aa1-9053-7bccc30249e8 b3fea09631fce9e12b2bb5e3ab638949 {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.RNA-Seq.S25_L007_R1.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af 642c44b9a5e2ebc892d941de95d8fdee {"aliquot_tag": "ALQ_f0ec8e98", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.RNA-Seq.S25_L007_R2.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 f10504f3-e9a4-4e87-9cda-7b7d225d0b17 85cab8bec0009082ed2f99c046fbbbe3 {"aliquot_tag": "ALQ_f0ec8e98", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.RNA-Seq.transcriptome.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.transcriptome.gdc_realn.bam 7265273801 BAM transcriptome harmonized CPTAC3 a22b57ff-b701-444c-b733-56b6ad544820 9d2bfccff5237cb702d13e29dcda7d7a {"aliquot_tag": "ALQ_f0ec8e98", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.WGS.N C3N-03484 GBM WGS blood_normal CPT0285150002 CPT0285150002.WholeGenome.RP-2158.bam 29465818741 BAM submitted_aligned CPTAC3 1123e65d-b1d8-4090-9660-a5b192325c5d 9aa4f6135fe7b71553ee013bb2d0b8cb {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03484.WGS.N.hg38 C3N-03484 GBM WGS blood_normal CPT0285150002 258921c4-2923-423e-baae-2d7c9530872c_wgs_gdc_realn.bam 87200070473 BAM harmonized CPTAC3 9b795115-1bc6-4f21-96c6-53a3249ce701 ffa87c7023b32f9163508f6c96a1a623 {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03484.WGS.T C3N-03484 GBM WGS tumor CPT0285140006 CPT0285140006.WholeGenome.RP-2158.bam 20856065528 BAM submitted_aligned CPTAC3 d4e3ab41-533f-487c-b10e-ee7bc793d949 e40cd7d46a37881d1c44ff4401b025d3 {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.WGS.T.hg38 C3N-03484 GBM WGS tumor CPT0285140006 fc55acf5-fe90-40c2-9d6f-665007d5bf46_wgs_gdc_realn.bam 62228038734 BAM harmonized CPTAC3 aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e ddb5d90f0e65e4b4fb4b3156fcf0957c {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.WXS.N C3N-03484 GBM WXS blood_normal CPT0285150002 CPT0285150002.WholeExome.RP-1303.bam 23963647596 BAM submitted_aligned CPTAC3 f8cce809-a398-47be-8948-746afe7eec16 02ac6be8ecc3a454e94bfb2d96ba813e {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03484.WXS.N.hg38 C3N-03484 GBM WXS blood_normal CPT0285150002 258921c4-2923-423e-baae-2d7c9530872c_wxs_gdc_realn.bam 32203087130 BAM harmonized CPTAC3 0fa3081f-5444-4293-a0b7-ec0010a27be4 b173daff4bdd01b24073d664c5cffcf9 {"aliquot_tag": "ALQ_5a5e7ea0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03484.WXS.T C3N-03484 GBM WXS tumor CPT0285140006 CPT0285140006.WholeExome.RP-1303.bam 24592525747 BAM submitted_aligned CPTAC3 b8cccab3-76d7-4121-bc02-0595bb4339d7 698076270233e1e424e2a4f263029c3e {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03484.WXS.T.hg38 C3N-03484 GBM WXS tumor CPT0285140006 fc55acf5-fe90-40c2-9d6f-665007d5bf46_wxs_gdc_realn.bam 34008928383 BAM harmonized CPTAC3 cc502628-c645-4eaf-94b2-d12c2924ea3b 3354c784036547bfba7ebde9b46404c9 {"aliquot_tag": "ALQ_60539309", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03486.MethArray.Green.T C3N-03486 LSCC Methylation_Array tumor CPT0195510009 203219640095_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 254f5627-ebdb-4f3b-9a1c-36b9da4fbdb4 0faf8f360275021735578efd480b6e5b {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.MethArray.Red.T C3N-03486 LSCC Methylation_Array tumor CPT0195510009 203219640095_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 fd276e34-f332-47f0-a45c-acb11a00342c 09255edfb2dda580d440124179d90216 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.miRNA-Seq.A.hg38 C3N-03486 LSCC miRNA-Seq tissue_normal CPT0195520006 5cf9db8f-5788-4391-98fd-1f4daaf0c3e7_mirnaseq_gdc_realn.bam 223986256 BAM harmonized CPTAC3 44799c0c-438c-46e7-9b12-cf5245b459e6 b8fe231fdd3b62eec72aa939d936b400 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.miRNA-Seq.S17_L003_R1.T C3N-03486 LSCC miRNA-Seq tumor CPT0195510006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTAGAG_S17_L003_R1_001.unaln.bam 183371575 BAM S17_L003_R1 submitted_unaligned CPTAC3 6af2f011-2275-4474-8179-7b6a387394c1 74c54c7d8c887fbcca849627b5c5f90a {"aliquot_tag": "ALQ_c6056234", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.miRNA-Seq.S45_L004_R1.A C3N-03486 LSCC miRNA-Seq tissue_normal CPT0195520006 181219_UNC31-K00269_0173_BHYGJJBBXX_TCCCGA_S45_L004_R1_001.unaln.bam 199638617 BAM S45_L004_R1 submitted_unaligned CPTAC3 cbd39aea-3d77-403a-ab2a-b8c3f67424a6 b7ff154341da11de5913be0e3383f077 {"aliquot_tag": "ALQ_81a518e4", "sample": "S45", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.miRNA-Seq.T.hg38 C3N-03486 LSCC miRNA-Seq tumor CPT0195510006 1145714d-53f2-46cd-b6c4-0cce6036d200_mirnaseq_gdc_realn.bam 198472726 BAM harmonized CPTAC3 d71a0057-33ec-477e-8836-e7e6b184abc3 6856f2ebebe612c0ca78a96ac973cadf {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.RNA-Seq.chimeric.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.chimeric.gdc_realn.bam 143317166 BAM chimeric harmonized CPTAC3 7672ee0d-61b0-4c99-964c-2ceaa32d2791 ee3726254fc18994c49b4817dc633c57 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.RNA-Seq.chimeric.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.chimeric.gdc_realn.bam 115609723 BAM chimeric harmonized CPTAC3 e61fd2c4-6349-4ce0-befc-ad1d45f02e14 16280c4c7eee4c1fb636e44871ca68a4 {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.RNA-Seq.genomic.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.genomic.gdc_realn.bam 6622354629 BAM genomic harmonized CPTAC3 1b750683-4c33-41a6-beb9-8f48f1642c10 0f56910fb8cd7e1c2a8ffa0292351b00 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.RNA-Seq.genomic.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.genomic.gdc_realn.bam 9685969267 BAM genomic harmonized CPTAC3 e083e983-adaf-4793-a88b-f3f58624aac1 09a16c09cd4f092559cc0b591ff939e4 {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.RNA-Seq.S18_L005_R1.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 2878895786 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 e344fc2b-0a01-4b88-9d6e-3030b6535de0 8e4159303df7c57b77f5df49e9b714f9 {"aliquot_tag": "ALQ_81a518e4", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.RNA-Seq.S18_L005_R2.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 3076716774 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 1ea088f4-3643-4395-8d81-683409b4c2bb ba0bd4a248fb37dc2c0f9f67521ef1a4 {"aliquot_tag": "ALQ_81a518e4", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.RNA-Seq.S29_L006_R1.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R1_001.fastq.gz 4475166605 FASTQ S29_L006_R1 submitted_unaligned CPTAC3 46b4e742-4b02-485c-a4c6-746de574c222 35f4dfe9a63c7e1787d1f1fd1ef1e76b {"aliquot_tag": "ALQ_c6056234", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.RNA-Seq.S29_L006_R2.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R2_001.fastq.gz 4685089915 FASTQ S29_L006_R2 submitted_unaligned CPTAC3 3686409a-862f-46d5-b5c3-51c05146f90e 57500faec2ed05daf63f9a815967af1f {"aliquot_tag": "ALQ_c6056234", "sample": "S29", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.RNA-Seq.transcriptome.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.transcriptome.gdc_realn.bam 7857932420 BAM transcriptome harmonized CPTAC3 86be8641-bfef-4f16-8d94-7eb59f45414f 4408e4c036c309803c6d71dbd960e179 {"aliquot_tag": "ALQ_81a518e4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.RNA-Seq.transcriptome.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.transcriptome.gdc_realn.bam 13236343331 BAM transcriptome harmonized CPTAC3 2dca1f70-643f-42fc-8eed-ab4daff26ba8 ceedd94a9754e7780d447b300016ae5a {"aliquot_tag": "ALQ_c6056234", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.WGS.A C3N-03486 LSCC WGS tissue_normal CPT0195520009 CPT0195520009.WholeGenome.RP-1303.bam 56006825846 BAM submitted_aligned CPTAC3 5eaf1435-a050-4e40-9084-ae45ea8c4b8f d8af56fee672aed7260362304309133e {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.WGS.A.hg38 C3N-03486 LSCC WGS tissue_normal CPT0195520009 1813c1d8-24d0-42f9-b1ec-a216c3612018_wgs_gdc_realn.bam 83438404122 BAM harmonized CPTAC3 10d266c1-aecb-4e51-86fb-87586aa84cad 5dabdde0301fca3b1f411e8e3084edce {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.WGS.N C3N-03486 LSCC WGS blood_normal CPT0195610002 CPT0195610002.WholeGenome.RP-1303.bam 84381110240 BAM submitted_aligned CPTAC3 7d1d71e6-57cc-4aad-8bff-6bcc6c221446 61a8aa35ed288276e8632e12505b54fa {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03486.WGS.N.hg38 C3N-03486 LSCC WGS blood_normal CPT0195610002 ee42812c-00ed-48dc-9368-dbaccf74827e_wgs_gdc_realn.bam 127477121903 BAM harmonized CPTAC3 32d31bb5-6c2c-4744-bac4-14a297cce04b e897567086fba836a31e5ea1b678a88d {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03486.WGS.T C3N-03486 LSCC WGS tumor CPT0195510009 CPT0195510009.WholeGenome.RP-1303.bam 78761768834 BAM submitted_aligned CPTAC3 8470e57f-37c5-418e-a6fa-b2b35607cfbe fbf2c701ee3daa9ddeee081c2ca61284 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.WGS.T.hg38 C3N-03486 LSCC WGS tumor CPT0195510009 20d89cb5-a513-4faa-92f4-cf1f43cbae18_wgs_gdc_realn.bam 118204084087 BAM harmonized CPTAC3 6a31bc2a-344d-4be0-b0d3-76a24d5805d6 3c13b2c82dce78c830d56a879a5b1ae6 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.WXS.A C3N-03486 LSCC WXS tissue_normal CPT0195520009 CPT0195520009.WholeExome.RP-1303.bam 23071302371 BAM submitted_aligned CPTAC3 758328ea-ef5b-47f3-8568-7721db9457b7 9699bfd368b173ade306f40eacc73735 {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.WXS.A.hg38 C3N-03486 LSCC WXS tissue_normal CPT0195520009 1813c1d8-24d0-42f9-b1ec-a216c3612018_wxs_gdc_realn.bam 32006258990 BAM harmonized CPTAC3 439f3d79-cb6c-4283-8684-536c960e9653 0a3c624fc1283aad61d33a7f51e65323 {"aliquot_tag": "ALQ_111a0575", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03486.WXS.N C3N-03486 LSCC WXS blood_normal CPT0195610002 CPT0195610002.WholeExome.RP-1303.bam 31700073431 BAM submitted_aligned CPTAC3 969ca974-8050-43cf-97db-c854a002daa7 3aa70da15096260e9c284ac12cf36974 {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03486.WXS.N.hg38 C3N-03486 LSCC WXS blood_normal CPT0195610002 ee42812c-00ed-48dc-9368-dbaccf74827e_wxs_gdc_realn.bam 43867543953 BAM harmonized CPTAC3 84051ecf-2e64-43bc-8528-237b961f9c46 ed09b5cada62d7bbd32272f31ff1784b {"aliquot_tag": "ALQ_47fcd483", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03486.WXS.T C3N-03486 LSCC WXS tumor CPT0195510009 CPT0195510009.WholeExome.RP-1303.bam 26809553111 BAM submitted_aligned CPTAC3 0d2e4c1f-be14-4fb5-a3e4-bcfb32938efb ffaa8d47aeb2cc4be4900edc492856fe {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03486.WXS.T.hg38 C3N-03486 LSCC WXS tumor CPT0195510009 20d89cb5-a513-4faa-92f4-cf1f43cbae18_wxs_gdc_realn.bam 37178175896 BAM harmonized CPTAC3 ff2575c5-3ec5-4b8e-8dfe-53cdece5de5f f20cce795115e2d8b654bb3d99cc62b9 {"aliquot_tag": "ALQ_56ba7fa5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.MethArray.Green.A C3N-03487 HNSCC Methylation_Array tissue_normal CPT0194980009 203271750057_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e51541cf-b6ff-479d-8cda-59ea13e35ed6 c5a8e50021301e269630a2dfe4bde872 {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.MethArray.Green.T C3N-03487 HNSCC Methylation_Array tumor CPT0194960009 203273200110_R01C01_Grn.idat 13676206 IDAT Green NA CPTAC3 246583fe-4181-409d-b866-deb829cf69ab 5aef434c0ecef6ea13474dcadc4330ab {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.MethArray.Red.A C3N-03487 HNSCC Methylation_Array tissue_normal CPT0194980009 203271750057_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 014d8637-fe9e-4bae-b8aa-1d0546debd29 29c692c1d94e0252b98516a5160e80aa {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.MethArray.Red.T C3N-03487 HNSCC Methylation_Array tumor CPT0194960009 203273200110_R01C01_Red.idat 13676206 IDAT Red NA CPTAC3 5cffdaa7-6a9d-4350-9b93-86e45c363b62 f1deb7ee8e51e24815a26512244805b7 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.miRNA-Seq.A.hg38 C3N-03487 HNSCC miRNA-Seq tissue_normal CPT0194980006 aee3b457-4f48-48c7-9a55-9c41586317c1_mirnaseq_gdc_realn.bam 257222102 BAM harmonized CPTAC3 bf783435-e359-41fb-be5a-8a2ed1229159 021b81ceb0b4ad3a32a4442d10d4236a {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.miRNA-Seq.S11_L003_R1.T C3N-03487 HNSCC miRNA-Seq tumor CPT0194960013 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L003_R1_001.unaln.bam 242338865 BAM S11_L003_R1 submitted_unaligned CPTAC3 8e1591c3-7be8-4f94-94b8-83bc6df8b3bd f005388693ee5cad16b853f09b72e1db {"aliquot_tag": "ALQ_cce1b025", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.miRNA-Seq.S22_L003_R1.A C3N-03487 HNSCC miRNA-Seq tissue_normal CPT0194980006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L003_R1_001.unaln.bam 226929409 BAM S22_L003_R1 submitted_unaligned CPTAC3 cce80feb-8e1a-4611-aa37-06d38308a586 a9dd4e2339ad31095b650963986a1888 {"aliquot_tag": "ALQ_1aa0cb8a", "sample": "S22", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.miRNA-Seq.T.hg38 C3N-03487 HNSCC miRNA-Seq tumor CPT0194960013 454adf8d-1535-4012-a4ec-d310ad01dc0d_mirnaseq_gdc_realn.bam 267280389 BAM harmonized CPTAC3 18e04e01-72ec-4009-a6f9-8d46e550fc93 8d2468109d6de74772391de5e84d2797 {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.chimeric.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.chimeric.gdc_realn.bam 251637810 BAM chimeric harmonized CPTAC3 7b37bdcb-8ae0-47e3-9cf7-15a16bde7d97 ee09c8a525457248343b8cfadd8fa8c1 {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.RNA-Seq.chimeric.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.chimeric.gdc_realn.bam 309428583 BAM chimeric harmonized CPTAC3 0fca3aff-d56d-430b-9a17-0ac5ba669e2c c9e4102b14c9a1a408d9aa49656c3243 {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.chimeric.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.chimeric.gdc_realn.bam 201906217 BAM chimeric harmonized CPTAC3 3ad3f35f-bb21-40df-949a-1c486bad9235 96c2d633589a438ed3f648a510d6ea04 {"aliquot_tag": "ALQ_2cd77ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.genomic.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.genomic.gdc_realn.bam 7753094858 BAM genomic harmonized CPTAC3 51c57310-ab85-4f50-b0c2-fdab860d63a8 505d7a5989d2ffa82f04181beb90e8e1 {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.RNA-Seq.genomic.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.genomic.gdc_realn.bam 7030015830 BAM genomic harmonized CPTAC3 e5ee9734-18b1-47d6-87b5-9f90bde4c7d4 19c6377e27be54bd2c271de5f40f46d2 {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.genomic.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.genomic.gdc_realn.bam 11140036334 BAM genomic harmonized CPTAC3 4ea8ed99-b58e-4c51-a071-df9c23ed8961 b22d8943401c06e2c88a1164e3ad1fc7 {"aliquot_tag": "ALQ_2cd77ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.S18_L005_R1.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3595332583 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 e3db7125-d6bf-4004-84b2-6f9f495bb77d 2620041fe3b28602ffe208135ca65ed0 {"aliquot_tag": "ALQ_1aa0cb8a", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.RNA-Seq.S18_L005_R2.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4023377319 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 1efae587-8f83-47c6-a8c5-b311163629a9 e7e35660bde87f2bfe0584235225c699 {"aliquot_tag": "ALQ_1aa0cb8a", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.RNA-Seq.S52_R1.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R1_001.fastq.gz 5352292883 FASTQ S52_R1 submitted_unaligned CPTAC3 df1c6a5f-5c79-40c2-a2ca-ad35245dbc24 616cc763622e788dd8f16090659f6c30 {"aliquot_tag": "ALQ_2cd77ed5", "sample": "S52", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.S52_R2.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R2_001.fastq.gz 5511221398 FASTQ S52_R2 submitted_unaligned CPTAC3 9b781148-60bc-48b8-89a0-1ab8d734cba3 611640d229be33d4989e3cb3821051bf {"aliquot_tag": "ALQ_2cd77ed5", "sample": "S52", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.S8_L008_R1.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3344472700 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 5ce91bbc-6d15-4c90-b514-ed2c1f72f7b1 4e0343ce9dfa0492c699b9028e37ce6c {"aliquot_tag": "ALQ_cce1b025", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.S8_L008_R2.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 3899458231 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 fc15a27e-1e62-4d26-a05b-f7a0c4cc1bc5 68a29f6eac637bec502ebe302cb0d413 {"aliquot_tag": "ALQ_cce1b025", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.transcriptome.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.transcriptome.gdc_realn.bam 9409315881 BAM transcriptome harmonized CPTAC3 82efa606-e1a0-456f-967f-aeff53044d91 7c37eed5c033389e4f01668f996c6a46 {"aliquot_tag": "ALQ_1aa0cb8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.RNA-Seq.transcriptome.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.transcriptome.gdc_realn.bam 9257322239 BAM transcriptome harmonized CPTAC3 cb43f0a4-53e5-423d-aabe-d5efb2c4917a 135adac4ba6ad753406def5e7631e3bc {"aliquot_tag": "ALQ_cce1b025", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.RNA-Seq.transcriptome.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.transcriptome.gdc_realn.bam 5158626363 BAM transcriptome harmonized CPTAC3 c6c80a00-ed28-4681-818d-18c47c37948a 9a9af1231611a7d932756fe226cd3743 {"aliquot_tag": "ALQ_2cd77ed5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.WGS.N C3N-03487 HNSCC WGS blood_normal CPT0195070002 CPT0195070002.WholeGenome.RP-1303.bam 62548499532 BAM submitted_aligned CPTAC3 8dda8e2b-0df3-4677-bcfb-1a78c4e2c68c 172c3d49cc027421f2d48f62b7a39013 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03487.WGS.N.hg38 C3N-03487 HNSCC WGS blood_normal CPT0195070002 5952f6d2-9a74-4404-9a00-1239265dc7d9_wgs_gdc_realn.bam 89691918518 BAM harmonized CPTAC3 b20d74b7-52a9-4641-96ce-2c4eb414de31 3b2cc686901e2efa888b17d200339208 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03487.WGS.T C3N-03487 HNSCC WGS tumor CPT0194960009 CPT0194960009.WholeGenome.RP-1303.bam 60531736043 BAM submitted_aligned CPTAC3 4eeb0f2f-a006-4a88-a925-f7bf32dc4cb1 f58df91c90cde0d517aca95dcbcb74b1 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.WGS.T.hg38 C3N-03487 HNSCC WGS tumor CPT0194960009 d2b8eb8f-f2c1-4d99-9a6b-fa1a752cfaad_wgs_gdc_realn.bam 87870775086 BAM harmonized CPTAC3 9c690a59-ba07-4375-909e-bac1d4c6314a f3ea9001be7b52d86576a1660ea1f84e {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.WXS.A C3N-03487 HNSCC WXS tissue_normal CPT0194980009 CPT0194980009.WholeExome.RP-1303.bam 24431235503 BAM submitted_aligned CPTAC3 a221c66f-2a0a-4aeb-b28a-a3a2b0ff5779 1b13ef3a9f5a37396b86b8f3d57e42fd {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.WXS.A.hg38 C3N-03487 HNSCC WXS tissue_normal CPT0194980009 7f7c8bc1-aa0e-4f6b-b6da-e759b3a04970_wxs_gdc_realn.bam 33459241916 BAM harmonized CPTAC3 8764e4cf-abfe-43fb-a6b5-862d8fa3215a 6aab9aa47d7e9dbfe188582bf08eec2b {"aliquot_tag": "ALQ_8a1fd61b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03487.WXS.N C3N-03487 HNSCC WXS blood_normal CPT0195070002 CPT0195070002.WholeExome.RP-1303.bam 27104624347 BAM submitted_aligned CPTAC3 e94be834-58c3-4057-bcf5-9a1dc99c351f d2ba5ad1c5039445029ef7bc19754fa0 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03487.WXS.N.hg38 C3N-03487 HNSCC WXS blood_normal CPT0195070002 5952f6d2-9a74-4404-9a00-1239265dc7d9_wxs_gdc_realn.bam 36792240940 BAM harmonized CPTAC3 0fe6e0b6-6343-4de4-bcdf-3ce76f996224 0829f91fb21b08759daf963498cd10c2 {"aliquot_tag": "ALQ_1ee5c23e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03487.WXS.T C3N-03487 HNSCC WXS tumor CPT0194960009 CPT0194960009.WholeExome.RP-1303.bam 18290034336 BAM submitted_aligned CPTAC3 f12ed001-6580-4168-908b-af35a5f5d47b 068d7b82e4e486d055c20c106d437328 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03487.WXS.T.hg38 C3N-03487 HNSCC WXS tumor CPT0194960009 d2b8eb8f-f2c1-4d99-9a6b-fa1a752cfaad_wxs_gdc_realn.bam 26071574310 BAM harmonized CPTAC3 c7adc0b3-56c8-454d-86d4-f0ee38c7a197 61bd1752d4dd3224c4a0147ba37cef81 {"aliquot_tag": "ALQ_352f687a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.MethArray.Green.A C3N-03488 HNSCC Methylation_Array tissue_normal CPT0194260009 203219640047_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4841e165-86de-419d-9a55-78c5271a5419 86f5f4db5d4152f6bb44c38caa26710e {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.MethArray.Green.T C3N-03488 HNSCC Methylation_Array tumor CPT0194250009 203273200073_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 48f37927-170a-46a4-a8de-35024b019938 274fce730c5fc7a40d6be39e960ca577 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.MethArray.Red.A C3N-03488 HNSCC Methylation_Array tissue_normal CPT0194260009 203219640047_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 264102a7-12cf-46dd-a3d5-44290f27587a 3db284863dacdd3a45243bfd28ad4a7f {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.MethArray.Red.T C3N-03488 HNSCC Methylation_Array tumor CPT0194250009 203273200073_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 1e9bb7b6-420e-4c75-a632-e096b32e70e1 973a3baa618700375b3698d4fcaef889 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.miRNA-Seq.A.hg38 C3N-03488 HNSCC miRNA-Seq tissue_normal CPT0194260006 c63bff36-fa05-43c5-9765-e566f0002a8e_mirnaseq_gdc_realn.bam 279332386 BAM harmonized CPTAC3 4f0c6014-c65d-4315-97bb-adbcc991721e 2725600494adf76cc2b6e76bf0cfd91b {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.miRNA-Seq.S19_L003_R1.A C3N-03488 HNSCC miRNA-Seq tissue_normal CPT0194260006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L003_R1_001.unaln.bam 251391980 BAM S19_L003_R1 submitted_unaligned CPTAC3 18a1b466-8f29-47d9-a864-c79c70125cae 21c49d53fc900344f169923bba9492a6 {"aliquot_tag": "ALQ_cf578528", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.miRNA-Seq.S8_L003_R1.T C3N-03488 HNSCC miRNA-Seq tumor CPT0194250013 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTTGA_S8_L003_R1_001.unaln.bam 219529435 BAM S8_L003_R1 submitted_unaligned CPTAC3 2e000fe2-7651-4e92-8f4e-26133a2686cb 0a754f7cbf56347d250e46c639280c52 {"aliquot_tag": "ALQ_e1863a36", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.miRNA-Seq.T.hg38 C3N-03488 HNSCC miRNA-Seq tumor CPT0194250013 0811d9fa-0627-439e-ab9b-be88ff4c14f9_mirnaseq_gdc_realn.bam 243432661 BAM harmonized CPTAC3 08ccac6a-54d4-4eac-9675-f4151adc7df5 78a3d25bc8ca93f54c8be232e9c06c78 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.chimeric.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.chimeric.gdc_realn.bam 361267019 BAM chimeric harmonized CPTAC3 3935941d-7e40-47e8-a6b8-b548b798df1d 40e0ec3c836a3c28dcc54ebaafa5cdca {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.RNA-Seq.chimeric.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.chimeric.gdc_realn.bam 340925531 BAM chimeric harmonized CPTAC3 96b78a6c-7481-48f8-9ffe-6ce06183e027 6e15da43ad0a78a61d94d18a11456bb1 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.chimeric.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.chimeric.gdc_realn.bam 155811769 BAM chimeric harmonized CPTAC3 d2857233-ffc1-42cd-925c-a5d29992d928 f5eec91127a1d96919836b7471ba1c76 {"aliquot_tag": "ALQ_ca78b61b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.genomic.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.genomic.gdc_realn.bam 9258219343 BAM genomic harmonized CPTAC3 a4245775-f491-458d-bab1-da73588ade4e 8045e3fbc0c89afd7c182190fd5bbd08 {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.RNA-Seq.genomic.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.genomic.gdc_realn.bam 8800054513 BAM genomic harmonized CPTAC3 4a79ee64-38c7-411b-8935-87126a90203e b12789ad7519a0f97c6a7d6b4e1bb5a9 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.genomic.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.genomic.gdc_realn.bam 14821132192 BAM genomic harmonized CPTAC3 791cd084-d0ad-4683-b864-396810e964f3 418ae84dc5f6acb6976a68f841f2eb2c {"aliquot_tag": "ALQ_ca78b61b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.S21_L006_R1.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4278259141 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 d25245be-5718-4f6b-92a7-ddb81b277592 833ee8d3d2cf3b3ce47e0756b1ec83bb {"aliquot_tag": "ALQ_cf578528", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.RNA-Seq.S21_L006_R2.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4682112501 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 8a68abd7-3487-49a1-93bc-601e5cf3626b 481c7c2e5950cce661b829d1d75335f6 {"aliquot_tag": "ALQ_cf578528", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.RNA-Seq.S2_L001_R1.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R1_001.fastq.gz 4195953922 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 2b388b80-b84f-4a89-943e-e13e05469504 84ef94645bb0a189e0dbece517b014dc {"aliquot_tag": "ALQ_e1863a36", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.S2_L001_R2.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R2_001.fastq.gz 4758724724 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 5dcdb168-82db-4792-90d9-0d0f84b03cc4 775a45cba584780fa0866cf37819d589 {"aliquot_tag": "ALQ_e1863a36", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.S53_R1.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R1_001.fastq.gz 8993429563 FASTQ S53_R1 submitted_unaligned CPTAC3 3719256b-3359-441d-a387-765a7aa6d214 9094ac33d1057a776a939403937eddff {"aliquot_tag": "ALQ_ca78b61b", "sample": "S53", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.S53_R2.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R2_001.fastq.gz 9236181115 FASTQ S53_R2 submitted_unaligned CPTAC3 d5c7b590-8f6d-4e0e-b43e-1f2cca3bf7c7 dbfaf509d0c64f6c44bb7de87c031363 {"aliquot_tag": "ALQ_ca78b61b", "sample": "S53", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.transcriptome.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.transcriptome.gdc_realn.bam 12479106416 BAM transcriptome harmonized CPTAC3 62c554ba-0dcf-496c-ae97-8f2002d78070 bc7aec0a2abcd8ac21d281d0b73b6d14 {"aliquot_tag": "ALQ_cf578528", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.RNA-Seq.transcriptome.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.transcriptome.gdc_realn.bam 12159401913 BAM transcriptome harmonized CPTAC3 583ed60f-f0bf-42e1-a78f-4beb84efb00e 468d7a8e1ab43e3d2ef9402ab487c6b8 {"aliquot_tag": "ALQ_e1863a36", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.RNA-Seq.transcriptome.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.transcriptome.gdc_realn.bam 10727269329 BAM transcriptome harmonized CPTAC3 77a6947d-9642-471e-a102-4de23fd37900 546ca390701619ed075dcb9a6106a717 {"aliquot_tag": "ALQ_ca78b61b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.WGS.N C3N-03488 HNSCC WGS blood_normal CPT0194350002 CPT0194350002.WholeGenome.RP-1303.bam 64193374117 BAM submitted_aligned CPTAC3 101e9347-a2ee-42f4-aae5-9159a8733977 c3debf6adcc688ff778f9f2647f36a54 {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03488.WGS.N.hg38 C3N-03488 HNSCC WGS blood_normal CPT0194350002 5e7082da-c685-4905-98d7-a95507755ab3_wgs_gdc_realn.bam 92342619730 BAM harmonized CPTAC3 1bfb4160-6b19-406d-948d-8205be21b509 9ce0203936c00185f75b6f3d2b78ac27 {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03488.WGS.T C3N-03488 HNSCC WGS tumor CPT0194250009 CPT0194250009.WholeGenome.RP-1303.bam 74949739248 BAM submitted_aligned CPTAC3 4c5d0deb-01fd-4063-b406-84389245fb9f 5ea9832eb83d3ae12e1314d46716d9b2 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.WGS.T.hg38 C3N-03488 HNSCC WGS tumor CPT0194250009 a1eedb0b-d0a3-4f36-9b6e-5c4f21a04400_wgs_gdc_realn.bam 110987360820 BAM harmonized CPTAC3 2159c66a-efdd-445b-bb03-1779f7b050fa 4759050665dba1812dc3df972fc3a6d4 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.WXS.A C3N-03488 HNSCC WXS tissue_normal CPT0194260009 CPT0194260009.WholeExome.RP-1303.bam 42627729075 BAM submitted_aligned CPTAC3 eab4be00-f4a5-4419-9128-1b50f17689c8 ccce9bb215feb4df2d4575ab45bf98ca {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.WXS.A.hg38 C3N-03488 HNSCC WXS tissue_normal CPT0194260009 6d39d0e2-c49f-43cc-aac2-eada488ca537_wxs_gdc_realn.bam 58110351862 BAM harmonized CPTAC3 b30401b0-cf05-4656-9de7-639ad8e337e4 a9cae71b685ea979d742416a3ae2f8d3 {"aliquot_tag": "ALQ_5fe898b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03488.WXS.N C3N-03488 HNSCC WXS blood_normal CPT0194350002 CPT0194350002.WholeExome.RP-1303.bam 20467412139 BAM submitted_aligned CPTAC3 3cd53f22-0ec0-495c-b888-74e9603a97b0 ec335b89653ba9d8604fd854f59bd536 {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03488.WXS.N.hg38 C3N-03488 HNSCC WXS blood_normal CPT0194350002 5e7082da-c685-4905-98d7-a95507755ab3_wxs_gdc_realn.bam 28036264339 BAM harmonized CPTAC3 0f7e7d50-4353-4e6d-8b8d-0bec19b9c708 dd6e211d303063aada5dfca8d95edbba {"aliquot_tag": "ALQ_44c6e844", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03488.WXS.T C3N-03488 HNSCC WXS tumor CPT0194250009 CPT0194250009.WholeExome.RP-1303.bam 22546531723 BAM submitted_aligned CPTAC3 6b6c007c-2560-495a-8e31-d1b7afba8cf2 7912e9a8bd4179c6f58bcb5c584fa697 {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03488.WXS.T.hg38 C3N-03488 HNSCC WXS tumor CPT0194250009 a1eedb0b-d0a3-4f36-9b6e-5c4f21a04400_wxs_gdc_realn.bam 30282813221 BAM harmonized CPTAC3 d8475a0b-478f-4a57-8778-4b5e57800f2c faff8aba40727f7066337ed4e89914ba {"aliquot_tag": "ALQ_1848e269", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.MethArray.Green.A C3N-03490 HNSCC Methylation_Array tissue_normal CPT0195700009 203219650096_R03C01_Grn.idat 13676210 IDAT Green NA CPTAC3 895deda6-e44d-4fa4-982a-9887912e50f5 25f28d3168db965c21569b67c8f669ec {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.MethArray.Green.T C3N-03490 HNSCC Methylation_Array tumor CPT0195680009 203271740156_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 65a07298-8be1-4410-ae9c-ba399ad46926 ccdc1b4b7ea2acc791c6b4a32b1a9f8f {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.MethArray.Red.A C3N-03490 HNSCC Methylation_Array tissue_normal CPT0195700009 203219650096_R03C01_Red.idat 13676210 IDAT Red NA CPTAC3 d17f704f-d262-48de-8609-25b7dc1e848b 7a5b32e14160df11afb761ca792510d3 {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.MethArray.Red.T C3N-03490 HNSCC Methylation_Array tumor CPT0195680009 203271740156_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 30549f2d-8bf8-4e9b-8b10-ef9dd478548c d8719056209ad5e481166a82ee539317 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.miRNA-Seq.A.hg38 C3N-03490 HNSCC miRNA-Seq tissue_normal CPT0195700006 cb09ff6d-7dc5-4680-adc8-983207855a21_mirnaseq_gdc_realn.bam 284910854 BAM harmonized CPTAC3 227b1c58-8dc5-46b7-aa3e-f72752b053ac c608cbd111d435e35ef9be6a46a05cde {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.miRNA-Seq.S23_L003_R1.A C3N-03490 HNSCC miRNA-Seq tissue_normal CPT0195700006 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L003_R1_001.unaln.bam 243772141 BAM S23_L003_R1 submitted_unaligned CPTAC3 4220fce6-960e-4dda-a8b5-45726a1e915b 7f511f11a4e53aff64506da34f53a0d6 {"aliquot_tag": "ALQ_b6adea8f", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.miRNA-Seq.S48_L002_R1.T C3N-03490 HNSCC miRNA-Seq tumor CPT0195680006 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGGCA_S48_L002_R1_001.unaln.bam 180812760 BAM S48_L002_R1 submitted_unaligned CPTAC3 4a62b9f5-961d-4064-a8b1-8bfb3a3133fe 41b21cb003a7d7fbaa6183649d8cd124 {"aliquot_tag": "ALQ_4d8172eb", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.miRNA-Seq.T.hg38 C3N-03490 HNSCC miRNA-Seq tumor CPT0195680006 9af36d0b-6d21-474b-a70e-88892d0fbc1a_mirnaseq_gdc_realn.bam 203223081 BAM harmonized CPTAC3 28b487c2-61b6-4b98-a033-e5bf6b1326be 2ee12a10ae9d23a4c09db2823753ad4f {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.chimeric.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.chimeric.gdc_realn.bam 222340632 BAM chimeric harmonized CPTAC3 5ccbefad-c6a8-4dd4-a91b-90d8eefa3e09 d8b25c775aa0c97f86b93693bdf2c9be {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.RNA-Seq.chimeric.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.chimeric.gdc_realn.bam 169400394 BAM chimeric harmonized CPTAC3 01c101be-6a5d-4327-8e0a-0a419b436707 8c37bb3d0272f3b5a86cd04610799e4c {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.chimeric.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.chimeric.gdc_realn.bam 194493673 BAM chimeric harmonized CPTAC3 e34501f7-3e48-4a45-93dc-73490a94b8dd 6e83a6754ab8524043b94d5a16230d37 {"aliquot_tag": "ALQ_4b121d0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.genomic.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.genomic.gdc_realn.bam 9487497382 BAM genomic harmonized CPTAC3 cb19d7b0-bc3a-48a1-ab09-c90bdfae9c17 4f74a620d4b91dbb55811c734670bd03 {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.RNA-Seq.genomic.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.genomic.gdc_realn.bam 5995620242 BAM genomic harmonized CPTAC3 3f0d7288-a13f-4cad-861e-b3c49936b300 7aaa7f9b3d0bdce33fe877889c80cfd9 {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.genomic.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.genomic.gdc_realn.bam 11294754405 BAM genomic harmonized CPTAC3 ca5b8f24-34f7-430e-ab5f-56eff54c27b3 1024921c6ce8ee036d6bef313ba4f9da {"aliquot_tag": "ALQ_4b121d0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.S12_L008_R1.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R1_001.fastq.gz 2692564309 FASTQ S12_L008_R1 submitted_unaligned CPTAC3 65900e87-8781-4a1d-a933-6ec5e5b92410 636d1f1f9c000382e5064b013702b951 {"aliquot_tag": "ALQ_4d8172eb", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.S12_L008_R2.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R2_001.fastq.gz 2915925896 FASTQ S12_L008_R2 submitted_unaligned CPTAC3 5996f568-5955-4a29-b3e9-81f0cc3d868b e05939cd7cbc45ddc795262036ef8a23 {"aliquot_tag": "ALQ_4d8172eb", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.S17_L005_R1.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4569437576 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 86d45950-0eb6-41c1-a687-f2b4a3d3153a 36749fcd985362d5f53ab2ab6099a9a2 {"aliquot_tag": "ALQ_b6adea8f", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.RNA-Seq.S17_L005_R2.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5058158415 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 93b85877-4e25-446e-822b-e7b58e2827e6 32d5500f6149e83a78a7e1a26c117a01 {"aliquot_tag": "ALQ_b6adea8f", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.RNA-Seq.S73_R1.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R1_001.fastq.gz 6583537995 FASTQ S73_R1 submitted_unaligned CPTAC3 fb86a691-9b2e-4072-8484-5e3a8d4be15d 43fa606c612b1216822b75e2ebfba58c {"aliquot_tag": "ALQ_4b121d0d", "sample": "S73", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.S73_R2.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R2_001.fastq.gz 6753931081 FASTQ S73_R2 submitted_unaligned CPTAC3 2ccffb64-0bc0-4480-8498-dc158f79e1e1 6e4eb51447f5119393460f8d0dd24ac0 {"aliquot_tag": "ALQ_4b121d0d", "sample": "S73", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.transcriptome.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.transcriptome.gdc_realn.bam 14378965528 BAM transcriptome harmonized CPTAC3 78d1786e-ca80-42ac-b28a-0b6bce73fb81 f5cb1d36add019e23082be0f7b3e18e7 {"aliquot_tag": "ALQ_b6adea8f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.RNA-Seq.transcriptome.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.transcriptome.gdc_realn.bam 7024047485 BAM transcriptome harmonized CPTAC3 1ecc91d3-d033-4d3e-827f-5f1178f00648 b133eba541d7d600f1d11f393ba0022a {"aliquot_tag": "ALQ_4d8172eb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.RNA-Seq.transcriptome.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.transcriptome.gdc_realn.bam 6392194679 BAM transcriptome harmonized CPTAC3 858dc62f-7936-45ac-bbd9-a9f6b67534e7 fca267bc019a1e7f081d5a037bf58821 {"aliquot_tag": "ALQ_4b121d0d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.WGS.N C3N-03490 HNSCC WGS blood_normal CPT0195790002 CPT0195790002.WholeGenome.RP-1303.bam 71140815108 BAM submitted_aligned CPTAC3 2eb1fabf-527f-431b-9b69-e6e617cbe020 ce85cc29d7b1519649d92d31082cebf2 {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03490.WGS.N.hg38 C3N-03490 HNSCC WGS blood_normal CPT0195790002 f000ac5e-b381-4539-bf2b-64b0d92319a2_wgs_gdc_realn.bam 103586674651 BAM harmonized CPTAC3 73946e3d-9ee0-49d1-ac9c-12f70831258f e7d3ece2b8314af141a575217ffcb685 {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03490.WGS.T C3N-03490 HNSCC WGS tumor CPT0195680009 CPT0195680009.WholeGenome.RP-1303.bam 64039305631 BAM submitted_aligned CPTAC3 a115e510-476b-48d4-825d-670db9cfc4a7 9f3b83c50a2e11d8dd1466211303d13a {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.WGS.T.hg38 C3N-03490 HNSCC WGS tumor CPT0195680009 36a25f31-a1a5-4493-ab9d-27a685e74fec_wgs_gdc_realn.bam 94840713163 BAM harmonized CPTAC3 eafc503d-f262-4b40-ad92-e145bf866119 c08c74eeea82ae42904129ca7824b002 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.WXS.A C3N-03490 HNSCC WXS tissue_normal CPT0195700009 CPT0195700009.WholeExome.RP-1303.bam 24384260823 BAM submitted_aligned CPTAC3 6666af42-bae1-4507-8d34-be88996fcf98 d9d13c5b434f5aaea530d773e92b32ce {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.WXS.A.hg38 C3N-03490 HNSCC WXS tissue_normal CPT0195700009 b814e55e-3812-46dd-9714-ad8bc42d5494_wxs_gdc_realn.bam 33519607999 BAM harmonized CPTAC3 6655aa10-d9c9-407a-84ac-a888b89b8bc3 67a10cdd6a13dd48577383e5c3800702 {"aliquot_tag": "ALQ_2612f71e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03490.WXS.N C3N-03490 HNSCC WXS blood_normal CPT0195790002 CPT0195790002.WholeExome.RP-1303.bam 43641851702 BAM submitted_aligned CPTAC3 682c6567-7737-483e-a1fa-640decaedfa6 c8b289ef3d9b0f44d7da68a1e00cbff3 {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03490.WXS.N.hg38 C3N-03490 HNSCC WXS blood_normal CPT0195790002 f000ac5e-b381-4539-bf2b-64b0d92319a2_wxs_gdc_realn.bam 60488139327 BAM harmonized CPTAC3 10252ace-4671-49bd-9f9d-facf5d6fe43b bd41169a6d74a5fac8b07ef4527a4d6b {"aliquot_tag": "ALQ_bcd04ce7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03490.WXS.T C3N-03490 HNSCC WXS tumor CPT0195680009 CPT0195680009.WholeExome.RP-1303.bam 25080739978 BAM submitted_aligned CPTAC3 318c9962-9233-4f28-91e2-03cff20698f0 d4cb391110433f1c75327fdc5037ab28 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03490.WXS.T.hg38 C3N-03490 HNSCC WXS tumor CPT0195680009 36a25f31-a1a5-4493-ab9d-27a685e74fec_wxs_gdc_realn.bam 35035725934 BAM harmonized CPTAC3 0697de70-2914-4b09-a090-1f2dc3c17d15 806b04ebca25487595bfd90fa00605f6 {"aliquot_tag": "ALQ_dd3e6f7a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.MethArray.Green.A C3N-03612 HNSCC Methylation_Array tissue_normal CPT0194800009 203219650047_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 aa32a27a-970f-4023-ab82-ff9a0bf06ef7 de5995fc3970eb4687dd47c2691d42ee {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.MethArray.Green.T C3N-03612 HNSCC Methylation_Array tumor CPT0194790009 203220070165_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 113d8d3e-a84c-449c-9803-356d8c8524ac 5be4faeda0e7449a304f415d0774be80 {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.MethArray.Red.A C3N-03612 HNSCC Methylation_Array tissue_normal CPT0194800009 203219650047_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 255e6bf0-38d4-4fbd-b959-6380e01e93f4 50f32690783b1f19720f36dbe8690420 {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.MethArray.Red.T C3N-03612 HNSCC Methylation_Array tumor CPT0194790009 203220070165_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 734b808e-02d9-441b-a6d9-69acdd8604a9 d80c8b6751e48e350ba994c82b85b5fc {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.miRNA-Seq.A.hg38 C3N-03612 HNSCC miRNA-Seq tissue_normal CPT0194800006 e6144a97-5e23-4164-9e44-a1b546b1a0dc_mirnaseq_gdc_realn.bam 193484332 BAM harmonized CPTAC3 8f4dca7a-d371-4136-8393-8c37c71353ad 745a7466628e4b565c40655415dc6082 {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.miRNA-Seq.S10_L003_R1.T C3N-03612 HNSCC miRNA-Seq tumor CPT0194790013 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L003_R1_001.unaln.bam 232210668 BAM S10_L003_R1 submitted_unaligned CPTAC3 1602f358-0a46-4f1b-b4a8-8957f9f9c18d a2c72d9962469ef9abb6364921251ce2 {"aliquot_tag": "ALQ_74bb4684", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.miRNA-Seq.S21_L003_R1.A C3N-03612 HNSCC miRNA-Seq tissue_normal CPT0194800006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L003_R1_001.unaln.bam 174836727 BAM S21_L003_R1 submitted_unaligned CPTAC3 965bb493-22d8-4d51-b1de-41e4973c98ad 38914b753c69e462a3012ec0f1fc3b7d {"aliquot_tag": "ALQ_e18c53ee", "sample": "S21", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.miRNA-Seq.T.hg38 C3N-03612 HNSCC miRNA-Seq tumor CPT0194790013 06e62279-fa76-438b-8552-0235b572e75c_mirnaseq_gdc_realn.bam 255539055 BAM harmonized CPTAC3 0e040661-411f-40cd-a91c-b7484ef5f68c 18e89cb17d69f44158693b820a87d67a {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.chimeric.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.chimeric.gdc_realn.bam 274794213 BAM chimeric harmonized CPTAC3 41dbccc6-df42-4365-9b04-0a01fff18207 a740afc972d3a72c9106aec2ce257fda {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.RNA-Seq.chimeric.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.chimeric.gdc_realn.bam 212910732 BAM chimeric harmonized CPTAC3 ac660a3b-0c99-484e-bcff-444b58ec9d3d 993a2c55c285faf72796028d5bd63048 {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.chimeric.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.chimeric.gdc_realn.bam 211774418 BAM chimeric harmonized CPTAC3 201e334d-31e6-4e3e-b1f0-3018b89e1e1c eb230677c51de030ad8d975236f9ac29 {"aliquot_tag": "ALQ_21538ddc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.genomic.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.genomic.gdc_realn.bam 7413563082 BAM genomic harmonized CPTAC3 0c9f41e7-9185-4932-b27d-5870a2b0c641 561f2f6590c7b8cbd4d191033e3bc902 {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.RNA-Seq.genomic.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.genomic.gdc_realn.bam 8678217569 BAM genomic harmonized CPTAC3 f6c436a9-ae2e-4e0c-ae86-8fa836a767f5 a67bd361fc1e33439765a819308b8e85 {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.genomic.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.genomic.gdc_realn.bam 11619410759 BAM genomic harmonized CPTAC3 fad9d08c-3cd8-4f2c-b513-a913e66210ca 4d4734aeaeea5d0600f6cd46233cca73 {"aliquot_tag": "ALQ_21538ddc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.S24_L006_R1.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R1_001.fastq.gz 3453599567 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 e31308a3-1e28-4348-942a-c93ef9a984e8 fdc61e8e1fe3c2baafcc46fd4b3170ef {"aliquot_tag": "ALQ_e18c53ee", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.RNA-Seq.S24_L006_R2.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R2_001.fastq.gz 3807189701 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 7be1ccd8-b95f-413f-9664-ac3cac74dbbe 8b88c511b629e4cf2364861c6ed2c68f {"aliquot_tag": "ALQ_e18c53ee", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.RNA-Seq.S29_R1.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R1_001.fastq.gz 8100142083 FASTQ S29_R1 submitted_unaligned CPTAC3 ab3319b7-e017-4811-9977-4a9c7afdf333 14d844d049385ef4b6e20af97fa7b251 {"aliquot_tag": "ALQ_21538ddc", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.S29_R2.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R2_001.fastq.gz 8344890773 FASTQ S29_R2 submitted_unaligned CPTAC3 bea7126c-85c5-46f6-92d4-6aedca968aa7 9e6a732911e33b4a599a7a973a61f40b {"aliquot_tag": "ALQ_21538ddc", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.S6_L008_R1.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4040392179 FASTQ S6_L008_R1 submitted_unaligned CPTAC3 e896cd56-c671-43d9-b4c1-89832620b660 fed3b2a8b57da78abe2c163bfc1e343a {"aliquot_tag": "ALQ_74bb4684", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.S6_L008_R2.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4548405210 FASTQ S6_L008_R2 submitted_unaligned CPTAC3 c46b1fc3-e786-42b0-8895-a002273e5280 19d2ca3d6668b865445037b80a0c0d99 {"aliquot_tag": "ALQ_74bb4684", "sample": "S6", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.transcriptome.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.transcriptome.gdc_realn.bam 10293730718 BAM transcriptome harmonized CPTAC3 65520f79-19ce-4445-9504-f5ac60540e5e 6615bdd04a169bf05b976afe9cf57009 {"aliquot_tag": "ALQ_e18c53ee", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.RNA-Seq.transcriptome.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.transcriptome.gdc_realn.bam 10116996303 BAM transcriptome harmonized CPTAC3 65ba8356-3553-4ecc-8452-9ec986f1fdfd e6413afb53b4363a2dd2286dbd8314fd {"aliquot_tag": "ALQ_74bb4684", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.RNA-Seq.transcriptome.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.transcriptome.gdc_realn.bam 8696601420 BAM transcriptome harmonized CPTAC3 60a4b304-540e-48b0-8de5-322c5f7e49b3 dee4ae455024263750aa91a7983cfbfd {"aliquot_tag": "ALQ_21538ddc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.WGS.N C3N-03612 HNSCC WGS blood_normal CPT0194890002 CPT0194890002.WholeGenome.RP-1303.bam 63702308352 BAM submitted_aligned CPTAC3 b7ef698b-15b1-4cc3-a251-71c64991526e b283436315f4ddb1d87cc0fedafd60ad {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03612.WGS.N.hg38 C3N-03612 HNSCC WGS blood_normal CPT0194890002 e8c264c5-c50c-44a4-86e4-97500b965dfd_wgs_gdc_realn.bam 92886518200 BAM harmonized CPTAC3 3adad855-acfe-47c7-86ca-2dca60c49929 f96d57a52cd51090e5da87411f62d6ba {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03612.WGS.T C3N-03612 HNSCC WGS tumor CPT0194790009 CPT0194790009.WholeGenome.RP-1303.bam 70177125578 BAM submitted_aligned CPTAC3 ad6eb4a1-e4ef-4263-86dd-a974f7e2af29 efc1c539d72ae86ccbeb2c39bb2702eb {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.WGS.T.hg38 C3N-03612 HNSCC WGS tumor CPT0194790009 a52558dd-88b4-4bda-8c25-d3b87bde4163_wgs_gdc_realn.bam 101525876270 BAM harmonized CPTAC3 f1d3ce82-c89a-4c51-b61f-196d3d59a939 2e243c637eb58969f53833ce88ced176 {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.WXS.A C3N-03612 HNSCC WXS tissue_normal CPT0194800009 CPT0194800009.WholeExome.RP-1303.bam 22246417923 BAM submitted_aligned CPTAC3 ddfc1346-cae6-4f4f-b5d2-3d2bf2f3912f 6d511457e96157d92501136a26fe3290 {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.WXS.A.hg38 C3N-03612 HNSCC WXS tissue_normal CPT0194800009 c5e79785-1e03-465e-a1ef-6d6db0164d8b_wxs_gdc_realn.bam 30851350204 BAM harmonized CPTAC3 ee2970cf-41c1-4c1e-9e0b-a016f4420688 7b79637cf2c8419374df3d1acdafd005 {"aliquot_tag": "ALQ_71334e7f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03612.WXS.N C3N-03612 HNSCC WXS blood_normal CPT0194890002 CPT0194890002.WholeExome.RP-1303.bam 46012789426 BAM submitted_aligned CPTAC3 4c9364dd-3a81-4ec3-b1e8-5567bd2318d5 3e5d9d457205bb8c53432a455e6c5dfc {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03612.WXS.N.hg38 C3N-03612 HNSCC WXS blood_normal CPT0194890002 e8c264c5-c50c-44a4-86e4-97500b965dfd_wxs_gdc_realn.bam 64533653781 BAM harmonized CPTAC3 9fee90a3-69c8-4cb5-a684-36a0d45f8f68 b7d298a0d4b8ffdb6f963e11c18bde25 {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03612.WXS.T C3N-03612 HNSCC WXS tumor CPT0194790009 CPT0194790009.WholeExome.RP-1303.bam 27425976946 BAM submitted_aligned CPTAC3 a91c1718-e597-4f89-a449-ec22bfd0ca6c f8a25debbf95b6a1e352e93e4477465a {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03612.WXS.T.hg38 C3N-03612 HNSCC WXS tumor CPT0194790009 a52558dd-88b4-4bda-8c25-d3b87bde4163_wxs_gdc_realn.bam 37564844679 BAM harmonized CPTAC3 7af29814-e9b2-4176-a781-1bbbf56c249a 9c3dfe2140a530a7af458bce9a469cdb {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.MethArray.Green.A C3N-03619 HNSCC Methylation_Array tissue_normal CPT0195880008 203271750010_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 10f23dd1-36da-4afe-9b60-fd109e160a25 9b6ae0602c5bb55b0f80ae0dd4dc3255 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.MethArray.Green.T C3N-03619 HNSCC Methylation_Array tumor CPT0195860009 203271750010_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 faf62f22-f60d-45a1-a273-ecf225d11803 289045b69609f4d3c441d92bff997674 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.MethArray.Red.A C3N-03619 HNSCC Methylation_Array tissue_normal CPT0195880008 203271750010_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 e806a090-fd48-4f3f-be80-df9e8705332b 4941b4ab4edc832ffc75a9b723521667 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.MethArray.Red.T C3N-03619 HNSCC Methylation_Array tumor CPT0195860009 203271750010_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 96cb3e74-2bca-44d8-a700-1b944357ba04 d9fd75be866ded10038671934136e168 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.miRNA-Seq.A.hg38 C3N-03619 HNSCC miRNA-Seq tissue_normal CPT0195880006 de5be65e-be92-48db-8a6a-1f8da9c66d20_mirnaseq_gdc_realn.bam 339915180 BAM harmonized CPTAC3 a04b2477-0d71-4610-b6e7-6c5a84e52278 849399e195a27087c0663a9870b91030 {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.miRNA-Seq.S1_L003_R1.T C3N-03619 HNSCC miRNA-Seq tumor CPT0195860006 190228_UNC32-K00270_0151_AHYLY3BBXX_ATCACG_S1_L003_R1_001.unaln.bam 173301832 BAM S1_L003_R1 submitted_unaligned CPTAC3 c97008d4-e736-458b-b0d5-957cfcf69614 01dafe979fe9908fc17731e51f27529a {"aliquot_tag": "ALQ_c8bbadfa", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.miRNA-Seq.S24_L003_R1.A C3N-03619 HNSCC miRNA-Seq tissue_normal CPT0195880006 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L003_R1_001.unaln.bam 300055303 BAM S24_L003_R1 submitted_unaligned CPTAC3 68c6dee9-d4b9-4974-9fca-50353e3c0c8e 8fd70285bce122c3bfa92b5f12966bc0 {"aliquot_tag": "ALQ_778b139b", "sample": "S24", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.miRNA-Seq.T.hg38 C3N-03619 HNSCC miRNA-Seq tumor CPT0195860006 50e05b42-2f62-4884-8467-5a9cb3331154_mirnaseq_gdc_realn.bam 193120099 BAM harmonized CPTAC3 75c8d8e7-037a-4ad0-b087-5aa828124ff1 50d327da3813401e598f5885cb6c19a5 {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.chimeric.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.chimeric.gdc_realn.bam 143919506 BAM chimeric harmonized CPTAC3 ae0cf5c3-f8e3-425d-957c-1cd67f01a030 03a71b47b7b4254c9fea58e7619d21b5 {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.RNA-Seq.chimeric.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.chimeric.gdc_realn.bam 346557287 BAM chimeric harmonized CPTAC3 199c8d30-8f7a-4f60-a7e0-60fb4a1803d4 2e17aef9f0fe7dd2bed91536e85fe13e {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.chimeric.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.chimeric.gdc_realn.bam 19727007 BAM chimeric harmonized CPTAC3 b406fba0-320f-4484-84b3-fdc0022fc23d 958d3bd64dc2111d8d086adc79cac407 {"aliquot_tag": "ALQ_bd82f1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.genomic.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.genomic.gdc_realn.bam 8140726365 BAM genomic harmonized CPTAC3 78aacc0b-8fa9-4b74-a9d6-20eec217abc4 252cd3ee1343f06263377ca600973eda {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.RNA-Seq.genomic.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.genomic.gdc_realn.bam 10071719463 BAM genomic harmonized CPTAC3 8277c156-7d5c-422d-911f-80ccd656514c 8524b8c5ec90eea2c2c4a3fa06a9e9c2 {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.genomic.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.genomic.gdc_realn.bam 9703965831 BAM genomic harmonized CPTAC3 af3a8f33-49bb-469f-b049-64386b3d2a8c a716a80d956d86bc5be456d4f4546fdd {"aliquot_tag": "ALQ_bd82f1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.S12_R1.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R1_001.fastq.gz 4413849755 FASTQ S12_R1 submitted_unaligned CPTAC3 2342b369-0752-4115-b300-e95f111028ed a9e6604d3c287bba7932dd3652166254 {"aliquot_tag": "ALQ_bd82f1d", "sample": "S12", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.S12_R2.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R2_001.fastq.gz 5348584965 FASTQ S12_R2 submitted_unaligned CPTAC3 63e6f6cd-a573-4122-82a2-af1d4406b2f5 906e65d76022728f57088ccab0cd30f5 {"aliquot_tag": "ALQ_bd82f1d", "sample": "S12", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.S20_L005_R1.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3884614029 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 26426145-5d8e-4bd5-91f4-fd0067a030b4 894d3b3f81cf42e5509b2374ca439173 {"aliquot_tag": "ALQ_778b139b", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.RNA-Seq.S20_L005_R2.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4380707783 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 655fd063-4b4f-44bd-af52-db6a730a6e85 461a0a5e286ed907727dcf1d637b1aee {"aliquot_tag": "ALQ_778b139b", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.RNA-Seq.S8_L002_R1.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R1_001.fastq.gz 4808070607 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 45f180f1-f34b-44cd-9d5b-966078330dcf a28528da62515aa3cc5698d71cbce76c {"aliquot_tag": "ALQ_c8bbadfa", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.S8_L002_R2.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R2_001.fastq.gz 4772200498 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 57ce3495-0c41-4d75-9766-bcad787552a4 4d4e8efef625ba46fff4e61a09122f96 {"aliquot_tag": "ALQ_c8bbadfa", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.transcriptome.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.transcriptome.gdc_realn.bam 13453709642 BAM transcriptome harmonized CPTAC3 44e58ede-2f32-4802-af4d-e8bcee0f7239 3d610b886d7081c90531125b8a339877 {"aliquot_tag": "ALQ_778b139b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.RNA-Seq.transcriptome.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.transcriptome.gdc_realn.bam 12549264193 BAM transcriptome harmonized CPTAC3 de8f99ec-8fc8-499f-a82e-07bef001e450 03051d6cb8b6a3b64f028947568dc507 {"aliquot_tag": "ALQ_c8bbadfa", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.RNA-Seq.transcriptome.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.transcriptome.gdc_realn.bam 7954604119 BAM transcriptome harmonized CPTAC3 c9ff6380-4884-4055-a4ed-03a0806052c9 42cc54d00ff4d8ea06cd7cdc49556452 {"aliquot_tag": "ALQ_bd82f1d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.WGS.N C3N-03619 HNSCC WGS blood_normal CPT0195970002 CPT0195970002.WholeGenome.RP-1303.bam 80539719519 BAM submitted_aligned CPTAC3 faf6c913-1b41-4749-965d-bf04390b0588 570a7d840ed9e0979cb81f8678f3a40e {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03619.WGS.N.hg38 C3N-03619 HNSCC WGS blood_normal CPT0195970002 43c3ebac-27fa-44dd-960c-59b5836294ae_wgs_gdc_realn.bam 116930583599 BAM harmonized CPTAC3 37263e71-1eea-45d3-8e06-49ea20949b3e 1c8f82608150091bfd9b76a57d147bc0 {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03619.WGS.T C3N-03619 HNSCC WGS tumor CPT0195860009 CPT0195860009.WholeGenome.RP-1303.bam 64407262242 BAM submitted_aligned CPTAC3 185626de-667b-4b50-aa37-71b450e01487 a3662fa081a3c2cfc4463c5544ae3949 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.WGS.T.hg38 C3N-03619 HNSCC WGS tumor CPT0195860009 3d293f91-e107-43e8-a333-959746843119_wgs_gdc_realn.bam 95040697491 BAM harmonized CPTAC3 3fbaebd7-ca3c-461a-bf46-ff6e9087abde f1fb6c15672c904652529c3983bc2eae {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.WXS.A C3N-03619 HNSCC WXS tissue_normal CPT0195880008 CPT0195880008.WholeExome.RP-1303.bam 35378849232 BAM submitted_aligned CPTAC3 1d8119e4-3032-47b5-ad41-30c1188048b2 85440f96793e01c6e337dbcd9a288ff2 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.WXS.A.hg38 C3N-03619 HNSCC WXS tissue_normal CPT0195880008 2433d21b-e57b-4f01-a944-328e8f5e7454_wxs_gdc_realn.bam 49991225335 BAM harmonized CPTAC3 19d425ff-59fb-4bbb-8472-99f9a45f22b4 8271d5cf2f0e1436d97bbce8fd639ef8 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03619.WXS.N C3N-03619 HNSCC WXS blood_normal CPT0195970002 CPT0195970002.WholeExome.RP-1303.bam 19267672932 BAM submitted_aligned CPTAC3 a5593572-8592-4157-8bcb-e35185951a1d 82c108a42bc21a16a97c09dd9fca061d {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03619.WXS.N.hg38 C3N-03619 HNSCC WXS blood_normal CPT0195970002 43c3ebac-27fa-44dd-960c-59b5836294ae_wxs_gdc_realn.bam 26882865893 BAM harmonized CPTAC3 4418ac8c-13ba-46b7-b1ab-f1f238dda1da 74a29ec28713cff93e43b00246aac4f1 {"aliquot_tag": "ALQ_39ea93f6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03619.WXS.T C3N-03619 HNSCC WXS tumor CPT0195860009 CPT0195860009.WholeExome.RP-1303.bam 41680330346 BAM submitted_aligned CPTAC3 50ce3f7b-3cd7-42e7-9a61-a9b92028ed2a 08f226b50f52c96c39b6d237e07bdc41 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03619.WXS.T.hg38 C3N-03619 HNSCC WXS tumor CPT0195860009 3d293f91-e107-43e8-a333-959746843119_wxs_gdc_realn.bam 56961149609 BAM harmonized CPTAC3 2e6e6782-f080-4328-a11f-a3a37fe8807e 11ea34e1d50d4074cb1d6ef3a443a5d2 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.MethArray.Green.A C3N-03620 HNSCC Methylation_Array tissue_normal CPT0196060006 203219650096_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 a2dbd55c-8f17-4e37-b279-2768e90d5df1 833f983d3584963f4d7052845d13351b {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.MethArray.Green.T C3N-03620 HNSCC Methylation_Array tumor CPT0196040009 203271750083_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 94e13915-8c86-4c85-80e2-9b27191b61ba 7e382729af651df919a6656fbc680078 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.MethArray.Red.A C3N-03620 HNSCC Methylation_Array tissue_normal CPT0196060006 203219650096_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 e0f00e5a-30c9-43bc-bd75-6704d4c81983 33d01a6d93b0dc5166bcf92bdc32a6cf {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.MethArray.Red.T C3N-03620 HNSCC Methylation_Array tumor CPT0196040009 203271750083_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 18d03df0-9233-490b-80fc-5c7f326c7c76 17e5f6d82cc775cf9972458873f6817f {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.miRNA-Seq.A.hg38 C3N-03620 HNSCC miRNA-Seq tissue_normal CPT0196060009 5e21f7da-d7b1-4235-9be5-fca13fe6048b_mirnaseq_gdc_realn.bam 292614594 BAM harmonized CPTAC3 bdae0446-fe25-4154-b930-550e897b5d13 c893a9e5e5058264359ae239cc17f037 {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.miRNA-Seq.S16_L003_R1.A C3N-03620 HNSCC miRNA-Seq tissue_normal CPT0196060009 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L003_R1_001.unaln.bam 247957301 BAM S16_L003_R1 submitted_unaligned CPTAC3 68ddc366-ca6f-4fe2-ba01-cff6fa057fd7 1d8bec9782e4a6f785d6445c6249026e {"aliquot_tag": "ALQ_85bf289b", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.miRNA-Seq.S2_L003_R1.T C3N-03620 HNSCC miRNA-Seq tumor CPT0196040006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L003_R1_001.unaln.bam 278613556 BAM S2_L003_R1 submitted_unaligned CPTAC3 77f4cb46-4606-49ec-9dd0-01cd7ce52891 c212f53736e0cfaabd6d22dd606545c2 {"aliquot_tag": "ALQ_6fc0666a", "sample": "S2", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.miRNA-Seq.T.hg38 C3N-03620 HNSCC miRNA-Seq tumor CPT0196040006 6809cfbd-961f-4c61-8ef8-ba373224d3fd_mirnaseq_gdc_realn.bam 306171844 BAM harmonized CPTAC3 ecb16fce-591c-49ff-a929-f9478ba99513 8b59eabd1ed867e0b28efe6fe8758e7a {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.chimeric.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.chimeric.gdc_realn.bam 106201699 BAM chimeric harmonized CPTAC3 10393522-aabf-47b2-89c8-e8927091963d caf7903b615d5ad81575664cecdfc8c7 {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.RNA-Seq.chimeric.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.chimeric.gdc_realn.bam 341112205 BAM chimeric harmonized CPTAC3 8aac3009-a874-4044-b78c-a6bb1d525df5 353ddfd216ae738982843ba920c23582 {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.chimeric.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.chimeric.gdc_realn.bam 44729177 BAM chimeric harmonized CPTAC3 9147a272-5433-4347-a44f-be7291bc2cdd d1d34873bc2eb8af5bf465a209ca7db3 {"aliquot_tag": "ALQ_2d4f2f89", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.genomic.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.genomic.gdc_realn.bam 9086424289 BAM genomic harmonized CPTAC3 92536091-c436-4f76-9c6a-e443c419435f 13170a39d936a10d0f136800bee3d42e {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.RNA-Seq.genomic.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.genomic.gdc_realn.bam 8803420795 BAM genomic harmonized CPTAC3 590224ab-eac6-47e7-88d3-c41f36dbf423 222b9cdc029b960072ce6148d6044ad0 {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.genomic.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.genomic.gdc_realn.bam 8394680505 BAM genomic harmonized CPTAC3 3d4b0d69-f2ad-499b-92e9-7218b4c19719 34730347c70fe9782896b9fee25abab8 {"aliquot_tag": "ALQ_2d4f2f89", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.S22_L006_R1.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4474669107 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 c6c8ddb3-8b66-44ad-af9d-b431a1160455 ab0be6fccbd59abd74dda9f2267239fe {"aliquot_tag": "ALQ_85bf289b", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.RNA-Seq.S22_L006_R2.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4558418470 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 5eee2bc0-0147-4040-a102-ad2b48914fd5 b418936bb657cc3e373578161923459f {"aliquot_tag": "ALQ_85bf289b", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.RNA-Seq.S32_R1.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R1_001.fastq.gz 4438347595 FASTQ S32_R1 submitted_unaligned CPTAC3 d3ac1a9d-1e0b-4dc6-a67b-624659a500d1 0234675d9a532020aaa8de264cd4900c {"aliquot_tag": "ALQ_2d4f2f89", "sample": "S32", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.S32_R2.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R2_001.fastq.gz 4680024141 FASTQ S32_R2 submitted_unaligned CPTAC3 cbfacd37-5f5c-4541-bc38-70fbdd73c3d7 6c1ef86141d15165733c55a378068eef {"aliquot_tag": "ALQ_2d4f2f89", "sample": "S32", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.S7_L002_R1.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R1_001.fastq.gz 4201795294 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 f9182b2a-3f82-4cb2-9fce-04d4ec52d12c 734832dbfb7116d1a8bdabd169fdac39 {"aliquot_tag": "ALQ_6fc0666a", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.S7_L002_R2.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R2_001.fastq.gz 4618291871 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 b1e05041-835d-4a7c-9ed4-6c26cfcec65d 45f85d3fe2d364eb93c9e845a8949929 {"aliquot_tag": "ALQ_6fc0666a", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.transcriptome.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.transcriptome.gdc_realn.bam 12956692466 BAM transcriptome harmonized CPTAC3 e00d1560-0a8c-4b05-9707-7972479d3679 77d6965e74b6b14c77de75cf1171adcd {"aliquot_tag": "ALQ_85bf289b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.RNA-Seq.transcriptome.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.transcriptome.gdc_realn.bam 11697653369 BAM transcriptome harmonized CPTAC3 6e4b0938-be83-4098-83a9-f4b6c27036a8 e3fd54e1a6dda1b6b3169a48df8862e7 {"aliquot_tag": "ALQ_6fc0666a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.RNA-Seq.transcriptome.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.transcriptome.gdc_realn.bam 5238719378 BAM transcriptome harmonized CPTAC3 e9444cb8-6a1e-41a2-9ea8-10f88252b587 f22e2e4832bfe6efe94be8536893d092 {"aliquot_tag": "ALQ_2d4f2f89", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.WGS.N C3N-03620 HNSCC WGS blood_normal CPT0196150002 CPT0196150002.WholeGenome.RP-1303.bam 69775404033 BAM submitted_aligned CPTAC3 6eb12754-b0f6-4b8d-aabb-40106db5f7da 73beed9e2b1088bf4a69295ef814d62d {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03620.WGS.N.hg38 C3N-03620 HNSCC WGS blood_normal CPT0196150002 ef04af76-839e-4c25-865a-2d38baa77ab2_wgs_gdc_realn.bam 103195179411 BAM harmonized CPTAC3 2697fc85-d00b-43cf-947e-52ef825d7970 a56f98643333f1d363d4afa9c2fb2b54 {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03620.WGS.T C3N-03620 HNSCC WGS tumor CPT0196040009 CPT0196040009.WholeGenome.RP-1303.bam 77825353336 BAM submitted_aligned CPTAC3 404bde09-2cdc-458f-92cd-d53d3aa9c452 a042be1b128848c98875376285ffbec5 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.WGS.T.hg38 C3N-03620 HNSCC WGS tumor CPT0196040009 62ff7145-4160-4cd7-9e57-b0e04f57bb72_wgs_gdc_realn.bam 114894719400 BAM harmonized CPTAC3 02fd5648-66ae-4a1c-be92-6105ee5055d2 0752d17bdfde6b66b5fc6366c756e1f2 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.WXS.A C3N-03620 HNSCC WXS tissue_normal CPT0196060006 CPT0196060006.WholeExome.RP-1303.bam 42854783721 BAM submitted_aligned CPTAC3 f6a22300-412c-42f6-8810-7070326df201 1176662c6696e0b856086f2d77640aeb {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.WXS.A.hg38 C3N-03620 HNSCC WXS tissue_normal CPT0196060006 16321a4d-3a0e-440e-bb64-adada482dde4_wxs_gdc_realn.bam 59695627408 BAM harmonized CPTAC3 d7f39d5e-2ff1-4bfc-8fed-c3d4cc1df77f b88f440523bfab156a02a6c3de57e403 {"aliquot_tag": "ALQ_1500350a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03620.WXS.N C3N-03620 HNSCC WXS blood_normal CPT0196150002 CPT0196150002.WholeExome.RP-1303.bam 40122050105 BAM submitted_aligned CPTAC3 c27ad8ab-0d2e-44e1-8faf-79837fb81549 a84fb207663e4fe8cbbe73752ea742d6 {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03620.WXS.N.hg38 C3N-03620 HNSCC WXS blood_normal CPT0196150002 ef04af76-839e-4c25-865a-2d38baa77ab2_wxs_gdc_realn.bam 55335067879 BAM harmonized CPTAC3 d9496225-ab4f-42be-aaea-ee35e0f7f988 ea13eb1dab49aeab171f307533909960 {"aliquot_tag": "ALQ_9e915866", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03620.WXS.T C3N-03620 HNSCC WXS tumor CPT0196040009 CPT0196040009.WholeExome.RP-1303.bam 34395569304 BAM submitted_aligned CPTAC3 8d550e1d-efc7-45ff-ab55-301ba490cc0d 700381823c1c0ec15085cf28442ae709 {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03620.WXS.T.hg38 C3N-03620 HNSCC WXS tumor CPT0196040009 62ff7145-4160-4cd7-9e57-b0e04f57bb72_wxs_gdc_realn.bam 47606975963 BAM harmonized CPTAC3 f0c44ce3-b75d-408e-b738-44f25c24c0cb 019bb66fa90b6bea6d8b4b2fe856c74e {"aliquot_tag": "ALQ_ff7f7bfb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.MethArray.Green.T C3N-03662 LSCC Methylation_Array tumor CPT0219360006 203219650165_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bba63a26-c72f-427d-a177-6ca2985bd4ea f2d46f6a08361a814244660ab1fbc5b1 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.MethArray.Red.T C3N-03662 LSCC Methylation_Array tumor CPT0219360006 203219650165_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 da622305-b177-4fa1-9bc7-b5772d4a54ba 68d7142c1fa2f373e05efb646c93b2a8 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.miRNA-Seq.S1_L003_R1.T C3N-03662 LSCC miRNA-Seq tumor CPT0219360009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L003_R1_001.unaln.bam 156706673 BAM S1_L003_R1 submitted_unaligned CPTAC3 4afbe82e-1024-4102-98b8-705aca20a693 a974ad96bf21a7cc66d6e9600d92dd66 {"aliquot_tag": "ALQ_1f0b0dac", "sample": "S1", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.miRNA-Seq.T.hg38 C3N-03662 LSCC miRNA-Seq tumor CPT0219360009 e06766bd-6776-461a-b1f4-3992cb06bc5e_mirnaseq_gdc_realn.bam 174889646 BAM harmonized CPTAC3 1e74f949-bbb5-4dc7-9c51-b878c67b3d47 ff4388df5f94ecca3fad84ef991f3e01 {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.RNA-Seq.chimeric.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.chimeric.gdc_realn.bam 185627489 BAM chimeric harmonized CPTAC3 4774a773-1519-43d9-9d93-e9520cc8795d 4d0a0304e06589add0533915013c2b54 {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.RNA-Seq.genomic.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.genomic.gdc_realn.bam 8220417261 BAM genomic harmonized CPTAC3 60dcb910-968c-41ae-88c8-02f6f2761aba d007679c7f7214aab4ae988dcfe42e5e {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.RNA-Seq.S9_L008_R1.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R1_001.fastq.gz 3708953372 FASTQ S9_L008_R1 submitted_unaligned CPTAC3 240c7214-e86d-4c8b-aaa2-e18fd1b9ba99 584e38215fdf1ac84f65135dd6ed8ff8 {"aliquot_tag": "ALQ_1f0b0dac", "sample": "S9", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.RNA-Seq.S9_L008_R2.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R2_001.fastq.gz 3671554318 FASTQ S9_L008_R2 submitted_unaligned CPTAC3 74607372-0396-4558-b39b-64c0b5a93226 607f7c29000bc9e67bb852ad14baca80 {"aliquot_tag": "ALQ_1f0b0dac", "sample": "S9", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.RNA-Seq.transcriptome.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.transcriptome.gdc_realn.bam 7633633734 BAM transcriptome harmonized CPTAC3 7fb60673-ef38-433a-bdd7-06cdeb2213f9 ac2231638d786d6b77cc7d5779331037 {"aliquot_tag": "ALQ_1f0b0dac", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.WGS.N C3N-03662 LSCC WGS blood_normal CPT0219480002 CPT0219480002.WholeGenome.RP-1303.bam 60839750259 BAM submitted_aligned CPTAC3 9d2c118b-d451-4a19-a394-24e3b96c333b 94ec631a5cd3b44222d3a634edc39981 {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03662.WGS.N.hg38 C3N-03662 LSCC WGS blood_normal CPT0219480002 eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wgs_gdc_realn.bam 88929296282 BAM harmonized CPTAC3 2ced49b5-6daa-47a3-985c-0f1837fed681 050222b829d752557ee0998f99da31ce {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03662.WGS.T C3N-03662 LSCC WGS tumor CPT0219360006 CPT0219360006.WholeGenome.RP-1303.bam 55329208636 BAM submitted_aligned CPTAC3 5c3370c8-91bf-4f15-ac8c-d7b155e8f734 40e68e9e7ef6782bb37c8871c8e6cb3d {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.WGS.T.hg38 C3N-03662 LSCC WGS tumor CPT0219360006 aabb4a27-736d-45c1-b5d2-e22def394b17_wgs_gdc_realn.bam 79956157417 BAM harmonized CPTAC3 8a0611ae-7f51-44bc-9342-0eec4b3bed3b cdcb3d3dd07da2f8820fa6d346a7cde4 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.WXS.N C3N-03662 LSCC WXS blood_normal CPT0219480002 CPT0219480002.WholeExome.RP-1303.bam 24083532552 BAM submitted_aligned CPTAC3 98ee178f-2c1f-4ae3-b081-ed6c307e7f6f 9e6798c4cccdc086cfe484613e079eb7 {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03662.WXS.N.hg38 C3N-03662 LSCC WXS blood_normal CPT0219480002 eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wxs_gdc_realn.bam 33800637186 BAM harmonized CPTAC3 ad8e0486-8b7e-4813-a620-d65d6a288451 9d86713118741d0639b8eef5d1d6123b {"aliquot_tag": "ALQ_2aec5afd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03662.WXS.T C3N-03662 LSCC WXS tumor CPT0219360006 CPT0219360006.WholeExome.RP-1303.bam 30682011556 BAM submitted_aligned CPTAC3 b3dc7719-8647-49b1-9635-09fe050126c5 c09c4ca01e35ec46d241fb27cfcbc569 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03662.WXS.T.hg38 C3N-03662 LSCC WXS tumor CPT0219360006 aabb4a27-736d-45c1-b5d2-e22def394b17_wxs_gdc_realn.bam 42799894376 BAM harmonized CPTAC3 0936aaa1-ffba-4b18-94a3-71e907a0f948 c607edbf1194e2ffcf04cd79aff61b69 {"aliquot_tag": "ALQ_8fb4103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.MethArray.Green.T C3N-03664 HNSCC Methylation_Array tumor CPT0196210009 203273200110_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 a3a56c7e-de5e-4b68-a977-28ec1dd727f2 e389b00def04a1b4b0e2e59c165af03c {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.MethArray.Red.T C3N-03664 HNSCC Methylation_Array tumor CPT0196210009 203273200110_R02C01_Red.idat 13676206 IDAT Red NA CPTAC3 039c47db-16fb-44b7-a74e-09975bc9cb7e 16ba192752290920e64a1440ab54b15a {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.miRNA-Seq.S3_L003_R1.T C3N-03664 HNSCC miRNA-Seq tumor CPT0196210006 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L003_R1_001.unaln.bam 216720616 BAM S3_L003_R1 submitted_unaligned CPTAC3 737e5013-b4db-4ca9-9f6f-d3121875798b 9bc30b261f235a8c7d24231abcde9dff {"aliquot_tag": "ALQ_eae84811", "sample": "S3", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.miRNA-Seq.T.hg38 C3N-03664 HNSCC miRNA-Seq tumor CPT0196210006 d43771b5-fe0e-4c5a-9ec0-d6bdfa4c6108_mirnaseq_gdc_realn.bam 238724317 BAM harmonized CPTAC3 6f6c61f0-a6d1-42c6-94f5-ff9b62897af6 f369541220f7016582a098af83c9213c {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.chimeric.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.chimeric.gdc_realn.bam 313182026 BAM chimeric harmonized CPTAC3 e2a7294f-4ce7-442c-8a80-b64229d3979f 599437fd5d933a8b637317520a61090b {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.chimeric.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.chimeric.gdc_realn.bam 104375043 BAM chimeric harmonized CPTAC3 37b45ea4-6558-4f22-8763-c8255dd55b91 b70fde331b1d0e7417868677cc309400 {"aliquot_tag": "ALQ_98174a33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.genomic.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.genomic.gdc_realn.bam 8517599165 BAM genomic harmonized CPTAC3 38c631a8-7d57-4512-8c66-7a051a278bd4 31fb0c7cfc1f95ebd620c2f51c54f5fc {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.genomic.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.genomic.gdc_realn.bam 6727955624 BAM genomic harmonized CPTAC3 09d6300b-4c7c-49bd-bea8-1e25204bfcc3 1fea0569580552b1d436d933edd67842 {"aliquot_tag": "ALQ_98174a33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.S19_R1.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R1_001.fastq.gz 4210695987 FASTQ S19_R1 submitted_unaligned CPTAC3 431c6831-fb98-4b46-adbc-870923a81a7a b48981f0520f5ec0921943427aaffd53 {"aliquot_tag": "ALQ_98174a33", "sample": "S19", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.S19_R2.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R2_001.fastq.gz 4313743776 FASTQ S19_R2 submitted_unaligned CPTAC3 9c03fb3f-0d0e-448e-af0e-a05027feda71 45a2fc3b99faf27c76ac5aa58460ed93 {"aliquot_tag": "ALQ_98174a33", "sample": "S19", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.S6_L002_R1.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R1_001.fastq.gz 3996768137 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 0b6603c5-2b74-4ac3-baf2-a198861141cc 31b0b7903a454f56c702bb7f177be73a {"aliquot_tag": "ALQ_eae84811", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.S6_L002_R2.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R2_001.fastq.gz 4427155254 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 f10b2fb9-e10b-4d85-b43d-04af9bbf70fc cea23030bc7b72624b941eba24d0036d {"aliquot_tag": "ALQ_eae84811", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.transcriptome.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.transcriptome.gdc_realn.bam 11540362774 BAM transcriptome harmonized CPTAC3 50476465-c470-423b-8c39-c02b9ed39d5d 757bd4e10185cb22417272a05cb9a02b {"aliquot_tag": "ALQ_eae84811", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.RNA-Seq.transcriptome.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.transcriptome.gdc_realn.bam 4277971072 BAM transcriptome harmonized CPTAC3 e19e7eca-e8f2-40a4-ae10-a1c9c3db0f55 bf0482eb40b02e38709228327f3a54cd {"aliquot_tag": "ALQ_98174a33", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.WGS.N C3N-03664 HNSCC WGS blood_normal CPT0196330002 CPT0196330002.WholeGenome.RP-1303.bam 67737829626 BAM submitted_aligned CPTAC3 0f503909-d6f8-4b98-9ed4-6da82f2bbe23 c8aec7f17a4ca9459db4f31f46d76ec3 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03664.WGS.N.hg38 C3N-03664 HNSCC WGS blood_normal CPT0196330002 87278be5-880b-403e-96ef-4556bc85a926_wgs_gdc_realn.bam 97245040114 BAM harmonized CPTAC3 ce108c0f-e488-4b39-bd3d-1614c8e4e9f2 e1b5317fc1f8ab7f423d3b5b1c10b657 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03664.WGS.T C3N-03664 HNSCC WGS tumor CPT0196210009 CPT0196210009.WholeGenome.RP-1303.bam 78907430986 BAM submitted_aligned CPTAC3 c55a97c7-50fb-4fd1-9d58-34a7f6204c3c c55dece2394b5a455f4f6a580910d247 {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.WGS.T.hg38 C3N-03664 HNSCC WGS tumor CPT0196210009 3908eb72-303d-4316-b8a6-41f76e1bbed5_wgs_gdc_realn.bam 114025064950 BAM harmonized CPTAC3 b1d07e06-bcf0-4001-932a-ddac51bbbfa3 a8c712b144814d49f7efc430ea057c7f {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.WXS.N C3N-03664 HNSCC WXS blood_normal CPT0196330002 CPT0196330002.WholeExome.RP-1303.bam 20562656998 BAM submitted_aligned CPTAC3 d1ab1f74-e808-4307-8f00-57e8ac74c5ed 0c6dc8cf84661fe32e1fde3150324428 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03664.WXS.N.hg38 C3N-03664 HNSCC WXS blood_normal CPT0196330002 87278be5-880b-403e-96ef-4556bc85a926_wxs_gdc_realn.bam 28517582735 BAM harmonized CPTAC3 00263335-42b0-4fd9-9dc3-54ae6c22bc5c d14047578deb033b8db03bad28176061 {"aliquot_tag": "ALQ_5c190ccd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03664.WXS.T C3N-03664 HNSCC WXS tumor CPT0196210009 CPT0196210009.WholeExome.RP-1303.bam 24341026552 BAM submitted_aligned CPTAC3 b3462b46-5189-4941-aa28-bad36438c73e 824e7c895d1f1f2f67adb59163a0282a {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03664.WXS.T.hg38 C3N-03664 HNSCC WXS tumor CPT0196210009 3908eb72-303d-4316-b8a6-41f76e1bbed5_wxs_gdc_realn.bam 33328496810 BAM harmonized CPTAC3 ec399f46-c282-4923-8744-252b8bc15d3c d65c7e70ff587d8dd9ce177bb5e7554a {"aliquot_tag": "ALQ_7a575580", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.MethArray.Green.T C3N-03665 PDA Methylation_Array tumor CPT0226760007 203561620049_R01C01_Grn.idat 13676232 IDAT Green NA CPTAC3 0dde8133-ccfe-4bf6-a54c-405cd3548eb1 18da1d006bb06c2072c7503ec0066f0c {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.MethArray.Red.T C3N-03665 PDA Methylation_Array tumor CPT0226760007 203561620049_R01C01_Red.idat 13676232 IDAT Red NA CPTAC3 47c90785-8de9-4f25-b959-52654727d911 d32ea30086c49455c67451bf9377d3b8 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.miRNA-Seq.S37_L004_R1.T C3N-03665 PDA miRNA-Seq tumor CPT0226760010 190813_UNC32-K00270_0196_AH5MCWBBXY_ACTTGA_S37_L004_R1_001.unaln.bam 529849778 BAM S37_L004_R1 submitted_unaligned CPTAC3 901b4de0-6074-46f0-8a37-1814179588cc 275d1b5b7c0da9ae4ffef7ac2f1e5431 {"aliquot_tag": "ALQ_9c9ab155", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.miRNA-Seq.T.hg38 C3N-03665 PDA miRNA-Seq tumor CPT0226760010 f267e13b-6548-4b97-9fab-0c90044775d8_mirnaseq_gdc_realn.bam 590655875 BAM harmonized CPTAC3 6146e431-ad3b-424f-9499-851aa31d4e24 523998ab7057032d0c8e05192ef38284 {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.RNA-Seq.chimeric.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.chimeric.gdc_realn.bam 114374577 BAM chimeric harmonized CPTAC3 c8f98cce-cbb5-47f3-8d9f-a9ec26b68db2 c53f44c80301689039b92c1cfe56b6bc {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.RNA-Seq.genomic.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.genomic.gdc_realn.bam 6276418354 BAM genomic harmonized CPTAC3 37b10f77-306f-4b1a-9ef7-355a17c705ee 2c456162d11c9fd1f1baf8126ffadbfe {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.RNA-Seq.S5_L002_R1.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R1_001.fastq.gz 2196094856 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 a8afbdde-3a80-43ee-acc6-e5a39caa4a94 521057f419d8fd4c058b91e1f6138164 {"aliquot_tag": "ALQ_9c9ab155", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.RNA-Seq.S5_L002_R2.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R2_001.fastq.gz 2177876854 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 26a833e9-1895-4c79-b299-a64162b49ee2 764d369e05046a22a3b8b5793698b037 {"aliquot_tag": "ALQ_9c9ab155", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.RNA-Seq.transcriptome.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.transcriptome.gdc_realn.bam 4928449211 BAM transcriptome harmonized CPTAC3 bd07199d-ec91-418b-856f-1e6d6b16ccc1 5bd10e4715944d9bfe6d7546f33aa5ef {"aliquot_tag": "ALQ_9c9ab155", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.WGS.N C3N-03665 PDA WGS blood_normal CPT0226800002 CPT0226800002.WholeGenome.RP-1303.bam 75055670922 BAM submitted_aligned CPTAC3 0c9b85ac-0698-45f3-826f-96e9cb83a4ea c2ee090850bdb4720d0de6c5206209d5 {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03665.WGS.N.hg38 C3N-03665 PDA WGS blood_normal CPT0226800002 1cdbcb35-ccb2-4bbe-9adb-1ac5f24201c2_wgs_gdc_realn.bam 111106725361 BAM harmonized CPTAC3 c014d68a-265f-49a4-bc80-b378e2593931 33ac58df80d5edcedf98c4be74ca4729 {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03665.WGS.T C3N-03665 PDA WGS tumor CPT0226760007 CPT0226760007.WholeGenome.RP-1303.bam 117102266566 BAM submitted_aligned CPTAC3 525e9e3b-f1d1-414a-b0e7-7a055c00c5b4 644c7b2037cdf980b73ee006bc9e2fb6 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.WGS.T.hg38 C3N-03665 PDA WGS tumor CPT0226760007 02ccbf9d-f299-4000-8151-97a51c2a74f7_wgs_gdc_realn.bam 169763195987 BAM harmonized CPTAC3 0b9b3093-734e-43dd-9fdd-a54d9bc67e1f 28ac01ca292d4953c0cf618f606e4376 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.WXS.N C3N-03665 PDA WXS blood_normal CPT0226800002 CPT0226800002.WholeExome.RP-1303.bam 27321595222 BAM submitted_aligned CPTAC3 2b9cd551-30b7-4775-b7c9-4223da31f48b efd431e9cf9d76230cc65d75ce0f9ff8 {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03665.WXS.N.hg38 C3N-03665 PDA WXS blood_normal CPT0226800002 1cdbcb35-ccb2-4bbe-9adb-1ac5f24201c2_wxs_gdc_realn.bam 37824355074 BAM harmonized CPTAC3 a1709132-3aa6-4c2e-b1b4-8adb05be8667 c1a1911c70add40bb93e0fe5e07eb63b {"aliquot_tag": "ALQ_1599a64d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03665.WXS.T C3N-03665 PDA WXS tumor CPT0226760007 CPT0226760007.WholeExome.RP-1303.bam 46248451357 BAM submitted_aligned CPTAC3 e0ba04bd-ebed-4d3b-9f4c-c46d0f1bbeca e5b6a4f9cc5807222098e2a2ef168edc {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03665.WXS.T.hg38 C3N-03665 PDA WXS tumor CPT0226760007 02ccbf9d-f299-4000-8151-97a51c2a74f7_wxs_gdc_realn.bam 65029406677 BAM harmonized CPTAC3 30c2bec6-df19-4331-b7cb-4cb0c9715f91 6036e15a06fe7d1c9ec588bc82a0af67 {"aliquot_tag": "ALQ_1be515b7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.MethArray.Green.T C3N-03666 PDA Methylation_Array tumor CPT0246720006 203561450048_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dddc4258-cdb6-4ba7-9594-b2f7b3bcb2bc c417653f0fc7132bff410e72d432f435 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.MethArray.Red.T C3N-03666 PDA Methylation_Array tumor CPT0246720006 203561450048_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 061e061a-16b0-4db9-a513-a6686cf43c03 acc132872264a15564dc97b4a82ae4e2 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.miRNA-Seq.S38_L004_R1.T C3N-03666 PDA miRNA-Seq tumor CPT0246720009 190813_UNC32-K00270_0196_AH5MCWBBXY_GATCAG_S38_L004_R1_001.unaln.bam 114279935 BAM S38_L004_R1 submitted_unaligned CPTAC3 80c001c1-d6b6-48dd-bb8b-c1004b5fe7f2 fd185d5d6dbaa6cd7282a5eeaea1a133 {"aliquot_tag": "ALQ_cfb297f7", "sample": "S38", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.miRNA-Seq.T.hg38 C3N-03666 PDA miRNA-Seq tumor CPT0246720009 ffca87bf-40ec-444f-b020-6d7e9131e27a_mirnaseq_gdc_realn.bam 128370410 BAM harmonized CPTAC3 30122042-6ade-4181-9390-4195edd77a0d 341b11aae97c53aec7fb6d2624034bae {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.RNA-Seq.chimeric.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.chimeric.gdc_realn.bam 194242212 BAM chimeric harmonized CPTAC3 9cbf529f-8ec7-402a-9cb4-10fbef44ba6b 6c0f3d799d76489a6b8b7f0bc87391c0 {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.RNA-Seq.genomic.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.genomic.gdc_realn.bam 9583938271 BAM genomic harmonized CPTAC3 1d72cd14-a769-4d61-a211-51be7b29445c 608773a7e0753cbfabbbb5b3c7c61161 {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.RNA-Seq.S6_L002_R1.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R1_001.fastq.gz 3500155043 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 3c57a676-0929-41e7-990d-ebbaddcac4ac 6a5c08f98704bc684083bd042c09e1eb {"aliquot_tag": "ALQ_cfb297f7", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.RNA-Seq.S6_L002_R2.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R2_001.fastq.gz 3550554483 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 fdc0fe85-8190-465c-8fa0-e567516bbcb0 2d4bd8db25cefed54dc5d241d70a6fc3 {"aliquot_tag": "ALQ_cfb297f7", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.RNA-Seq.transcriptome.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.transcriptome.gdc_realn.bam 8585105528 BAM transcriptome harmonized CPTAC3 7bcb326d-3dd5-4a70-8d2c-a0969d87f52f 58823040e11f57d046c7599db8c7e53b {"aliquot_tag": "ALQ_cfb297f7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.WGS.N C3N-03666 PDA WGS blood_normal CPT0246740002 CPT0246740002.WholeGenome.RP-1303.bam 88931873947 BAM submitted_aligned CPTAC3 f392cacb-eb4c-43c1-a249-5c5ef52f9f35 b5190464e77ac1989a58568a9c9b74d8 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03666.WGS.N.hg38 C3N-03666 PDA WGS blood_normal CPT0246740002 57b9c161-c170-4d92-b1e7-9aa2076a3620_wgs_gdc_realn.bam 131263793197 BAM harmonized CPTAC3 375a0b1a-aa78-4da8-b09e-fd6c0f11c2a2 36bc03488c1ddf11dd74534a52fa6d75 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03666.WGS.T C3N-03666 PDA WGS tumor CPT0246720006 CPT0246720006.WholeGenome.RP-1303.bam 150907971349 BAM submitted_aligned CPTAC3 f82d592b-97c7-46f1-b337-94f33b4b2ace 239a52aec56cc3996672a9e302b4f220 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.WGS.T.hg38 C3N-03666 PDA WGS tumor CPT0246720006 6ebdb367-7716-43e2-8844-7324f28daf3e_wgs_gdc_realn.bam 221648475397 BAM harmonized CPTAC3 518b86dc-9f49-4751-bf48-7cc3acb34044 bc0ffb0d755879bb7460cfae99583622 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.WXS.N C3N-03666 PDA WXS blood_normal CPT0246740002 CPT0246740002.WholeExome.RP-1303.bam 22537936406 BAM submitted_aligned CPTAC3 2e287eee-2cd5-47c7-91f0-0703b206977f 4d609460f92a4b7c0fd3aea6ad582ca9 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03666.WXS.N.hg38 C3N-03666 PDA WXS blood_normal CPT0246740002 57b9c161-c170-4d92-b1e7-9aa2076a3620_wxs_gdc_realn.bam 31327402706 BAM harmonized CPTAC3 6b33e1de-f76b-45e5-b4d6-1bd880413d8c c2439fec55c6887c3891e9f5eff25516 {"aliquot_tag": "ALQ_d720bbdf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03666.WXS.T C3N-03666 PDA WXS tumor CPT0246720006 CPT0246720006.WholeExome.RP-1303.bam 41528542052 BAM submitted_aligned CPTAC3 45dae827-2067-40ee-b306-328d0019886d d7433766caace4213b45f8201c9e6896 {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03666.WXS.T.hg38 C3N-03666 PDA WXS tumor CPT0246720006 6ebdb367-7716-43e2-8844-7324f28daf3e_wxs_gdc_realn.bam 58457795249 BAM harmonized CPTAC3 f66e212d-0780-46d2-8b2c-d8cb46abd074 ed385706b105643230ee8c38908a801a {"aliquot_tag": "ALQ_5f0d8a66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.MethArray.Green.A C3N-03670 PDA Methylation_Array tissue_normal CPT0246850006 203561450114_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 bc858e08-934c-4cfe-87c2-a7a50f96524d 0ee1edcbd319c4963471835e2a20b13d {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03670.MethArray.Green.T C3N-03670 PDA Methylation_Array tumor CPT0246840006 203561450027_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 cf0f96e9-ae27-4205-9772-d051827819ee 3cf006c98db01abcdf2e900a0e109c1d {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.MethArray.Red.A C3N-03670 PDA Methylation_Array tissue_normal CPT0246850006 203561450114_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 9006718f-c4f6-44d1-8bd4-bc868d470497 5da113e2b5e8db7423d4df24532df6f1 {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03670.MethArray.Red.T C3N-03670 PDA Methylation_Array tumor CPT0246840006 203561450027_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 8234e634-be39-4afc-8f6b-9fb700b9695e 877e51c601f8f7d4eeb983a843bf32be {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.miRNA-Seq.S45_L002_R1.T C3N-03670 PDA miRNA-Seq tumor CPT0246840013 190813_UNC32-K00270_0196_AH5MCWBBXY_CCGTCC_S45_L002_R1_001.unaln.bam 172881467 BAM S45_L002_R1 submitted_unaligned CPTAC3 31ee2725-b9b6-46a6-871f-627b7f6e209b 416ad9ed9c23bd3e2b4299c0f9d53fc6 {"aliquot_tag": "ALQ_486a08dd", "sample": "S45", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.miRNA-Seq.T.hg38 C3N-03670 PDA miRNA-Seq tumor CPT0246840013 31bed28f-8560-4e83-b187-c8446056d700_mirnaseq_gdc_realn.bam 196558200 BAM harmonized CPTAC3 537a274e-fad7-4b73-a7bc-c5c74c37f986 5bc52cc3912c17a39757bcbc716783e6 {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.RNA-Seq.chimeric.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.chimeric.gdc_realn.bam 307129724 BAM chimeric harmonized CPTAC3 6c87f9fb-5c26-47f3-8e50-9a70a736b75d ae251909a6b18a786cefea27ce61507d {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.RNA-Seq.genomic.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.genomic.gdc_realn.bam 10729266074 BAM genomic harmonized CPTAC3 d46b4236-1774-4536-99b2-a4eae25bdf20 a128e2b7a79a618c09cb7dc4f6a82037 {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.RNA-Seq.S18_L005_R1.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R1_001.fastq.gz 4364268270 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 f7dbacf3-01dc-48c9-b9a2-87c26c8a7174 bdb5c850f56727d9dfda4bee6bca1826 {"aliquot_tag": "ALQ_486a08dd", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.RNA-Seq.S18_L005_R2.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R2_001.fastq.gz 4521112708 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 e07b6519-b4db-4cb9-b73d-2e5779e5f8b8 83ec8534f530e9a50ebc588701a394c6 {"aliquot_tag": "ALQ_486a08dd", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.RNA-Seq.transcriptome.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.transcriptome.gdc_realn.bam 10034474191 BAM transcriptome harmonized CPTAC3 2d6c2d0e-c31d-440f-85eb-1a5da3c71082 190d39f819b743234b47fe9865f02ffc {"aliquot_tag": "ALQ_486a08dd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.WGS.N C3N-03670 PDA WGS blood_normal CPT0246880002 CPT0246880002.WholeGenome.RP-1303.bam 64325394775 BAM submitted_aligned CPTAC3 0c9769de-17a6-4958-bbeb-73a5c567289d 165005776c1ad2858eb691ca4749ed05 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03670.WGS.N.hg38 C3N-03670 PDA WGS blood_normal CPT0246880002 c23854b5-45f9-401f-a1b1-c0ac92ee4218_wgs_gdc_realn.bam 93012518314 BAM harmonized CPTAC3 d043299a-cfda-453b-856f-d1d1b9340163 857122b585ba786bb0f6e18deff64db5 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03670.WGS.T C3N-03670 PDA WGS tumor CPT0246840006 CPT0246840006.WholeGenome.RP-1303.PDO-18613.bam 101977217516 BAM submitted_aligned CPTAC3 884b7b47-a6ea-431a-bf2e-1ca08d84d0e1 1ed4a834c2415657f2ecce45c6cb7ea4 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.WGS.T.hg38 C3N-03670 PDA WGS tumor CPT0246840006 4c7477bc-e957-44e2-8ab3-7f2c1d35244c_wgs_gdc_realn.bam 149065074904 BAM harmonized CPTAC3 33ff3f50-035b-4378-a15c-a53256e81cda 75239bd325230dd971adbf6eb1fc00b1 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.WXS.A C3N-03670 PDA WXS tissue_normal CPT0246850006 CPT0246850006.WholeExome.RP-1303.bam 21012445637 BAM submitted_aligned CPTAC3 f8466c58-2190-4081-87b2-b6c69b6f149a 3c52165835fa49e9b6f236a895b413b5 {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03670.WXS.A.hg38 C3N-03670 PDA WXS tissue_normal CPT0246850006 8355b4b3-994b-48aa-8d81-a324ccef1cf9_wxs_gdc_realn.bam 29264389099 BAM harmonized CPTAC3 148d4140-4b8f-4826-87c5-fa7e2f2810ed 22299e82903a4809bf79ba2513ef1294 {"aliquot_tag": "ALQ_1c7be4a3", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03670.WXS.N C3N-03670 PDA WXS blood_normal CPT0246880002 CPT0246880002.WholeExome.RP-1303.bam 26751763847 BAM submitted_aligned CPTAC3 d653856d-eddc-429b-9bc9-0526c237b014 1d0943af67adc6e999088e199d2a2bf4 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03670.WXS.N.hg38 C3N-03670 PDA WXS blood_normal CPT0246880002 c23854b5-45f9-401f-a1b1-c0ac92ee4218_wxs_gdc_realn.bam 36617873511 BAM harmonized CPTAC3 3bf6cf4c-6846-4ed1-9608-df4f1f1b7186 be0ecc71b2117c4f8b1a630c870ccbe6 {"aliquot_tag": "ALQ_e386e40b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03670.WXS.T C3N-03670 PDA WXS tumor CPT0246840006 CPT0246840006.WholeExome.RP-1303.bam 25183206939 BAM submitted_aligned CPTAC3 61e0b96b-c812-4407-af05-0e062b7b30e9 97b0bfe309f5dba3a2a05333d4d31233 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03670.WXS.T.hg38 C3N-03670 PDA WXS tumor CPT0246840006 4c7477bc-e957-44e2-8ab3-7f2c1d35244c_wxs_gdc_realn.bam 34734834297 BAM harmonized CPTAC3 3ed81439-72db-4007-9000-e1fe6c5f1d28 4d558d6fc034c94a2bf7f7515bcd2865 {"aliquot_tag": "ALQ_211bcd13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.MethArray.Green.T C3N-03754 PDA Methylation_Array tumor CPT0246810006 203273630048_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 348d04c4-bb5c-4d93-a164-9e89972c54ab d375f052c77a3d14723ca574d7ddc91c {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.MethArray.Red.T C3N-03754 PDA Methylation_Array tumor CPT0246810006 203273630048_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 57a6088e-2f0b-4f33-9460-84dfcaebcbe7 d0103b7bd07eb068146d6d01dc8d1d9a {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.miRNA-Seq.S44_L002_R1.T C3N-03754 PDA miRNA-Seq tumor CPT0246810013 190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L002_R1_001.unaln.bam 142850165 BAM S44_L002_R1 submitted_unaligned CPTAC3 fea0f9a6-bb02-462d-ab92-259fa6940239 4d6f9fa4044b150ce7658631d2ba05c6 {"aliquot_tag": "ALQ_808a87ad", "sample": "S44", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.miRNA-Seq.T.hg38 C3N-03754 PDA miRNA-Seq tumor CPT0246810013 79feb52c-1046-41ef-80f0-7f615c208bac_mirnaseq_gdc_realn.bam 159875379 BAM harmonized CPTAC3 24be9d9e-c424-42b6-b8b0-0d8cf21d75ce 58d4f46920a730e8ccc76072f1d1be81 {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.RNA-Seq.chimeric.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.chimeric.gdc_realn.bam 260918233 BAM chimeric harmonized CPTAC3 6a86fa71-9b3b-48b6-87a9-34478b586dfe c901836a8989589d7ea41bfbeab3f867 {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.RNA-Seq.genomic.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.genomic.gdc_realn.bam 10074202536 BAM genomic harmonized CPTAC3 bc5bb2e5-a1ef-42a0-834c-dbfd24050815 226c999f0fbe9dee1a0594e8754a016d {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.RNA-Seq.S16_L005_R1.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R1_001.fastq.gz 4015495748 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 29f82aea-74fc-4ecf-8fda-ef41bb9616ec a274019bd1515c9068707a2548295479 {"aliquot_tag": "ALQ_808a87ad", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.RNA-Seq.S16_L005_R2.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R2_001.fastq.gz 4148066863 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 9cd965aa-d307-403c-87ba-f695cabbaf9a 43796513dd1bdd6e06d8d02904cc52fd {"aliquot_tag": "ALQ_808a87ad", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.RNA-Seq.transcriptome.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.transcriptome.gdc_realn.bam 9943714621 BAM transcriptome harmonized CPTAC3 8315b446-7653-48fd-bcca-9a2328b43354 e8669e6e964bac490c384235c1e79823 {"aliquot_tag": "ALQ_808a87ad", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.WGS.N C3N-03754 PDA WGS blood_normal CPT0246830002 CPT0246830002.WholeGenome.RP-1303.bam 70034050100 BAM submitted_aligned CPTAC3 9b4f5b14-f971-44ec-adcf-225ec70c6046 202f78643db911fe26d6c03ae8e59ce4 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03754.WGS.N.hg38 C3N-03754 PDA WGS blood_normal CPT0246830002 0b6cef8c-b642-4576-bb89-8a8a534064b7_wgs_gdc_realn.bam 101906454360 BAM harmonized CPTAC3 4de225d4-005b-4c18-9132-a4e1c5106a50 78afabd226990c705ff62c0bd8039653 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03754.WGS.T C3N-03754 PDA WGS tumor CPT0246810006 CPT0246810006.WholeGenome.RP-1303.PDO-18613.bam 139477191418 BAM submitted_aligned CPTAC3 ef615ebd-6589-4720-a4b5-8e351729d436 c6b80ec36b3069e3064a56425728c20d {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.WGS.T.hg38 C3N-03754 PDA WGS tumor CPT0246810006 a331da11-10c0-4880-91bb-18dd3d89446d_wgs_gdc_realn.bam 201150105480 BAM harmonized CPTAC3 3343e5cb-6233-479b-afbb-e5006594e3fd b9e79f0114bf0f981a06bf3c1b94d6db {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.WXS.N C3N-03754 PDA WXS blood_normal CPT0246830002 CPT0246830002.WholeExome.RP-1303.bam 28358283591 BAM submitted_aligned CPTAC3 922f2b96-3f2d-43e4-9278-5385cc32b1af e28b9c3092a3e48c31c6846d41567619 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03754.WXS.N.hg38 C3N-03754 PDA WXS blood_normal CPT0246830002 0b6cef8c-b642-4576-bb89-8a8a534064b7_wxs_gdc_realn.bam 38781903520 BAM harmonized CPTAC3 6528bc4d-bfc6-4e68-b458-61d76d4cb21c 48cb2550e3efccc6bd73890898b21992 {"aliquot_tag": "ALQ_9456d51a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03754.WXS.T C3N-03754 PDA WXS tumor CPT0246810006 CPT0246810006.WholeExome.RP-1303.bam 21638008112 BAM submitted_aligned CPTAC3 c8c29f0d-eec1-460f-911b-dbbf768613b3 5225f93557d028c73cce316ea4872e5e {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03754.WXS.T.hg38 C3N-03754 PDA WXS tumor CPT0246810006 a331da11-10c0-4880-91bb-18dd3d89446d_wxs_gdc_realn.bam 30131235874 BAM harmonized CPTAC3 bc374948-74d2-4b62-9b01-c7f0565c4646 2799403d6671323fac114926e546f02d {"aliquot_tag": "ALQ_e9fb4263", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03755.MethArray.Green.T C3N-03755 GBM Methylation_Array tumor CPT0248080006 204367490090_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6530c9a6-bc4e-4c26-b3dc-b489e051efcf 4d7dc9d9fb8acc70e7d1387a90474869 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.MethArray.Red.T C3N-03755 GBM Methylation_Array tumor CPT0248080006 204367490090_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 23877301-42b9-48b0-bd53-ac21f17fff1a 6c4d2209470cdb4c62797a7e93faed50 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.miRNA-Seq.S32_L002_R1.T C3N-03755 GBM miRNA-Seq tumor CPT0248080009 200403_UNC31-K00269_0274_AHCF7GBBXY_ACTTGA_S32_L002_R1_001.unaln.bam 205351927 BAM S32_L002_R1 submitted_unaligned CPTAC3 800060ad-d37e-49bd-82c9-99afe8462146 13ede4f16546d4b233b5f1a4e9d23d28 {"aliquot_tag": "ALQ_c838c4b3", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.miRNA-Seq.T.hg38 C3N-03755 GBM miRNA-Seq tumor CPT0248080009 05fdecb5-b154-4c51-be6a-4ab26d0ef0ac_mirnaseq_gdc_realn.bam 227839068 BAM harmonized CPTAC3 34fe4f31-bd59-4ee0-b450-71b440bb2c5f 64e124fe00583634e650afaf98f60848 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.RNA-Seq.chimeric.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.chimeric.gdc_realn.bam 178324940 BAM chimeric harmonized CPTAC3 8fc4dcc1-ea4b-4c6b-928d-37f903075a37 ab0e4caf99666ce2ed1de6dd54e75bb9 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.RNA-Seq.genomic.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.genomic.gdc_realn.bam 8051490711 BAM genomic harmonized CPTAC3 00a5fa0d-04ad-4c99-93ea-64804e60c5cf 8200d8863df85d4e686b03f1d3fdef75 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.RNA-Seq.S12_L008_R1.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R1_001.fastq.gz 3404251189 FASTQ S12_L008_R1 submitted_unaligned CPTAC3 b845241e-88cb-4f0c-9247-637536d1a2af 4facde3709a6078e7ace78543bf766d0 {"aliquot_tag": "ALQ_c838c4b3", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.RNA-Seq.S12_L008_R2.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ S12_L008_R2 submitted_unaligned CPTAC3 76548cbb-338c-4415-83dd-81b50d9ec658 c0a4204b5e54bd6c5c696decee768a27 {"aliquot_tag": "ALQ_c838c4b3", "sample": "S12", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.RNA-Seq.transcriptome.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.transcriptome.gdc_realn.bam 9191232631 BAM transcriptome harmonized CPTAC3 2de08e61-a2f8-4427-bd5c-b851083ee6e8 6add89307bc6b4846f1c80686a4664b9 {"aliquot_tag": "ALQ_c838c4b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.WGS.N C3N-03755 GBM WGS blood_normal CPT0248100002 CPT0248100002.WholeGenome.RP-2158.bam 22211557499 BAM submitted_aligned CPTAC3 e29350af-b032-4737-bb26-93bc812e18e9 5605784aebae86d2ea2b381aa5600bb9 {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03755.WGS.N.hg38 C3N-03755 GBM WGS blood_normal CPT0248100002 50fce217-0cc7-4115-8100-8251b2e1dbe8_wgs_gdc_realn.bam 66609631094 BAM harmonized CPTAC3 dbdb5f5a-a6ce-4299-9a44-e0ea85c470a6 5883ee296ed86131d4af56ac4beb6232 {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03755.WGS.T C3N-03755 GBM WGS tumor CPT0248080006 CPT0248080006.WholeGenome.RP-2158.bam 25993185932 BAM submitted_aligned CPTAC3 5ab180dc-d608-4f96-8b61-02cda9280ef7 dbf71b95b8ec11bf91fa650e6676d544 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.WGS.T.hg38 C3N-03755 GBM WGS tumor CPT0248080006 b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wgs_gdc_realn.bam 75535747829 BAM harmonized CPTAC3 3441fcde-5a81-4c50-8ec0-24c4ec3bb284 3af63bce84bc920341c0874ae7b99659 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.WXS.N C3N-03755 GBM WXS blood_normal CPT0248100002 CPT0248100002.WholeExome.RP-1303.bam 23664884530 BAM submitted_aligned CPTAC3 b06fbb9f-2cc9-44af-b3ed-238b820450e9 4f9c1cac9736cbc3340cb9d6ef2b5c99 {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03755.WXS.N.hg38 C3N-03755 GBM WXS blood_normal CPT0248100002 50fce217-0cc7-4115-8100-8251b2e1dbe8_wxs_gdc_realn.bam 30506791502 BAM harmonized CPTAC3 46385935-1b35-415e-86f3-09448db274f3 a2d851d4809f3e45c535499da40a1ecd {"aliquot_tag": "ALQ_a4c6855f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03755.WXS.T C3N-03755 GBM WXS tumor CPT0248080006 CPT0248080006.WholeExome.RP-1303.bam 17601322610 BAM submitted_aligned CPTAC3 52fa5352-c351-47f9-aa53-005005a6956f 41b0b33f9a69cd3b868fbf6bfb124f13 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03755.WXS.T.hg38 C3N-03755 GBM WXS tumor CPT0248080006 b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wxs_gdc_realn.bam 26137800668 BAM harmonized CPTAC3 c6a71dfb-c2ed-4488-a1ab-435ed2f4493f 123e927fa74ebb4b16c62d3190c41876 {"aliquot_tag": "ALQ_5887d922", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.MethArray.Green.T C3N-03756 GBM Methylation_Array tumor CPT0248110006 204367460011_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6cb98e91-7c0d-4d2a-b29e-62de72afbc50 75f8b248f004bf8050090c1e67bed672 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.MethArray.Red.T C3N-03756 GBM Methylation_Array tumor CPT0248110006 204367460011_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 848db9be-9afd-4aa2-973b-76f9b61082cf 0e1c87ae1b048426f226420e0e475ef7 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.miRNA-Seq.S33_L002_R1.T C3N-03756 GBM miRNA-Seq tumor CPT0248110009 200403_UNC31-K00269_0274_AHCF7GBBXY_GATCAG_S33_L002_R1_001.unaln.bam 177102291 BAM S33_L002_R1 submitted_unaligned CPTAC3 410550af-6a72-4a8b-8ffc-d101ef5458ba 9320443e61b220f6b3f1afae72eeb3c9 {"aliquot_tag": "ALQ_e747567", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.miRNA-Seq.T.hg38 C3N-03756 GBM miRNA-Seq tumor CPT0248110009 2e4b0676-8a92-47e5-8e9a-8bef3b29fccd_mirnaseq_gdc_realn.bam 199862148 BAM harmonized CPTAC3 33bbf501-79d7-4b50-8df8-8c8ce30d0aca a1c120077ffdcf962a6027dbab7c535f {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.RNA-Seq.chimeric.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.chimeric.gdc_realn.bam 294029170 BAM chimeric harmonized CPTAC3 83aadae9-ad4c-4c4f-82e3-9e11f40c531c c58bb446631651895a43eb04d5c9996f {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.RNA-Seq.genomic.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.genomic.gdc_realn.bam 8993512795 BAM genomic harmonized CPTAC3 0496cb54-800a-494e-9876-3db71357579c 7cbba67516b08d0a0df734434a47b937 {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.RNA-Seq.S26_L003_R1.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ S26_L003_R1 submitted_unaligned CPTAC3 e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 35aa2d5983f4681549daf407deedb456 {"aliquot_tag": "ALQ_e747567", "sample": "S26", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.RNA-Seq.S26_L003_R2.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ S26_L003_R2 submitted_unaligned CPTAC3 d5a6f477-3888-416d-bbe8-c6110091e40e 7b582c55da00b403970b29128324978c {"aliquot_tag": "ALQ_e747567", "sample": "S26", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.RNA-Seq.transcriptome.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.transcriptome.gdc_realn.bam 8386071195 BAM transcriptome harmonized CPTAC3 1e308929-74c6-4f57-a6ba-f9d8b8be54d3 ff8160b88b5c62ee03a7e3420121d9a5 {"aliquot_tag": "ALQ_e747567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.WGS.N C3N-03756 GBM WGS blood_normal CPT0248150002 CPT0248150002.WholeGenome.RP-2158.bam 21131293979 BAM submitted_aligned CPTAC3 1cd96b5e-db11-4c2d-a9b2-d768a15a1cdb 4dc37405ba4c2e374fbc5269d2f20d53 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03756.WGS.N.hg38 C3N-03756 GBM WGS blood_normal CPT0248150002 66e454ec-e406-4636-ac39-6f866a915a54_wgs_gdc_realn.bam 62889344302 BAM harmonized CPTAC3 e7091cde-15c0-427a-ab8c-f4260501dd7d 8489814decfa6167c8954159f5e422f2 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03756.WGS.T C3N-03756 GBM WGS tumor CPT0248110006 CPT0248110006.WholeGenome.RP-2158.bam 26962179175 BAM submitted_aligned CPTAC3 3ef22001-f398-4ea5-8f12-ee2e72f00c6d 12b0cda91ea1307d25d984d8ee465db9 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.WGS.T.hg38 C3N-03756 GBM WGS tumor CPT0248110006 9ff900ed-184e-485a-a302-8547b3370e49_wgs_gdc_realn.bam 79817657270 BAM harmonized CPTAC3 2312a271-58c8-4e5f-a6eb-702e901ea6fc ba8acc4e7d09f0da180e0d5a02c3e0c7 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.WXS.N C3N-03756 GBM WXS blood_normal CPT0248150002 CPT0248150002.WholeExome.RP-1303.bam 19049399344 BAM submitted_aligned CPTAC3 e20215d6-865c-4277-b5e9-c5cbcbc9fbd7 74e9bec673308192b1626205176eeb43 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03756.WXS.N.hg38 C3N-03756 GBM WXS blood_normal CPT0248150002 66e454ec-e406-4636-ac39-6f866a915a54_wxs_gdc_realn.bam 24900533593 BAM harmonized CPTAC3 55625e73-b970-4eed-a670-24a1338b7427 727db86d9dd15cd9744edff72c212a84 {"aliquot_tag": "ALQ_6c260a2f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03756.WXS.T C3N-03756 GBM WXS tumor CPT0248110006 CPT0248110006.WholeExome.RP-1303.bam 22753080992 BAM submitted_aligned CPTAC3 49daf6bc-00a0-493f-af83-b36bae5c0390 5765a6a995b4f8e4862e89949658047a {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03756.WXS.T.hg38 C3N-03756 GBM WXS tumor CPT0248110006 9ff900ed-184e-485a-a302-8547b3370e49_wxs_gdc_realn.bam 31383324403 BAM harmonized CPTAC3 19d498ba-9032-44d3-bf45-786ac215e4e1 64cdd705124a259c838a8922784967c0 {"aliquot_tag": "ALQ_9ecb68f6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.MethArray.Green.T C3N-03757 GBM Methylation_Array tumor CPT0248040006 204367470127_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 df652ab7-6975-4599-99ab-5939111f7247 dd5c4ab424e6f96991b80ce6b9ac0745 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.MethArray.Red.T C3N-03757 GBM Methylation_Array tumor CPT0248040006 204367470127_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 221b8a7f-9dd8-4267-9507-71f710d09832 68ad245cdeb70a1eb4ca4e33434fd503 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.miRNA-Seq.S31_L002_R1.T C3N-03757 GBM miRNA-Seq tumor CPT0248040009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAGATC_S31_L002_R1_001.unaln.bam 223881370 BAM S31_L002_R1 submitted_unaligned CPTAC3 0e40ba4c-ff44-476b-90d5-1b994bcb16be 174e2b21c1b0a33102b94fa231f9297e {"aliquot_tag": "ALQ_dc829b2", "sample": "S31", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.miRNA-Seq.T.hg38 C3N-03757 GBM miRNA-Seq tumor CPT0248040009 cd63d63e-0b6e-4e86-96bc-f5168390c5e4_mirnaseq_gdc_realn.bam 248543913 BAM harmonized CPTAC3 5eaa3845-65e0-4267-a04f-2514b3166463 2b51fae08dba9ac803337fb0c8ef4c0f {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.RNA-Seq.chimeric.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.chimeric.gdc_realn.bam 200720575 BAM chimeric harmonized CPTAC3 59b5f03d-128e-4ec7-b677-b113888faef9 eb3edec934b324159884ea1821df1072 {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.RNA-Seq.genomic.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.genomic.gdc_realn.bam 12106412003 BAM genomic harmonized CPTAC3 4788415e-9a6a-4ea2-b7c3-5d6d312fbbbd 3205972a5acf5eb62f55d1fd75edfecb {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.RNA-Seq.S59_L006_R1.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ S59_L006_R1 submitted_unaligned CPTAC3 4a00f13f-802b-479a-9c10-208b3158248a 8e10728c639d1fad5884770ad5fb33d9 {"aliquot_tag": "ALQ_dc829b2", "sample": "S59", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.RNA-Seq.S59_L006_R2.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ S59_L006_R2 submitted_unaligned CPTAC3 973c3d9c-0686-4288-a83d-725e7d2d0488 d9c65c130c0f72548cbd93bf5f9c029d {"aliquot_tag": "ALQ_dc829b2", "sample": "S59", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.RNA-Seq.transcriptome.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.transcriptome.gdc_realn.bam 14832133507 BAM transcriptome harmonized CPTAC3 50dbacaa-8163-4763-b133-a0140858adb0 f9d82da8d306880adba851c9d783e5f1 {"aliquot_tag": "ALQ_dc829b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.WGS.N C3N-03757 GBM WGS blood_normal CPT0248070002 CPT0248070002.WholeGenome.RP-2158.bam 24748606890 BAM submitted_aligned CPTAC3 bcc3251e-5b36-4ca6-bac9-212dd4dd5d9a 2a0748c11f3db41deb1d479a6f903e0f {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03757.WGS.N.hg38 C3N-03757 GBM WGS blood_normal CPT0248070002 8d894511-5d1c-4e1d-9276-2652042bb730_wgs_gdc_realn.bam 74844179183 BAM harmonized CPTAC3 8bbe506e-60c3-4df6-af3d-f7713d49b0dc 57f11f8c6528f5b1bdfc812ee89bb361 {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03757.WGS.T C3N-03757 GBM WGS tumor CPT0248040006 CPT0248040006.WholeGenome.RP-2158.bam 21315382528 BAM submitted_aligned CPTAC3 412452bc-414e-4ffc-aa7b-af95b5e0dabc 70eb73fe2a7599529b2ec7bdb9434d27 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.WGS.T.hg38 C3N-03757 GBM WGS tumor CPT0248040006 fa002608-faaf-4aa1-8594-0146105e9048_wgs_gdc_realn.bam 63162009480 BAM harmonized CPTAC3 b5398b66-5b43-4f83-a30a-21db3a30b5e9 926fc0fce287690bebb786bf88a15837 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.WXS.N C3N-03757 GBM WXS blood_normal CPT0248070002 CPT0248070002.WholeExome.RP-1303.bam 22962780889 BAM submitted_aligned CPTAC3 d167d275-86d1-4c8a-bee2-8b8adea4945f c90589826cdb855ea9258db5609f43dd {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03757.WXS.N.hg38 C3N-03757 GBM WXS blood_normal CPT0248070002 8d894511-5d1c-4e1d-9276-2652042bb730_wxs_gdc_realn.bam 31169625067 BAM harmonized CPTAC3 bc78ea1b-1673-4776-a7b8-93d09d7234dd f1472414f640cc7d7e8b32ae0ea69384 {"aliquot_tag": "ALQ_ddba8aea", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03757.WXS.T C3N-03757 GBM WXS tumor CPT0248040006 CPT0248040006.WholeExome.RP-1303.bam 21692557413 BAM submitted_aligned CPTAC3 fb48e7ec-37d9-4788-94c2-eb9a5adbc31a 881fb57ba5ddb5ce3060ea5dbe527ca8 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03757.WXS.T.hg38 C3N-03757 GBM WXS tumor CPT0248040006 fa002608-faaf-4aa1-8594-0146105e9048_wxs_gdc_realn.bam 29973231524 BAM harmonized CPTAC3 21121304-f000-449a-b9b4-898035459432 e86e1da33c454c33a96ceed58612bd90 {"aliquot_tag": "ALQ_9d773423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.MethArray.Green.A C3N-03762 LSCC Methylation_Array tissue_normal CPT0247250006 204367490057_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 45ab3c1a-6a7a-4b64-9cde-9392b724af6c c4deb8659786f96f1619a16587babef5 {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.MethArray.Green.T C3N-03762 LSCC Methylation_Array tumor CPT0247240006 204367470131_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f7ed7e70-e523-4d98-9404-31052ef8e149 5abe03f9d08b3cdab5a0842cdc92c28b {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.MethArray.Red.A C3N-03762 LSCC Methylation_Array tissue_normal CPT0247250006 204367490057_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 e201fa33-12fb-4062-bdde-778144668082 93bfc45f6a1aa4d35e9738c82f9b9f83 {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.MethArray.Red.T C3N-03762 LSCC Methylation_Array tumor CPT0247240006 204367470131_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 939af771-835e-4e78-8b65-ae7bf1bbc944 7f650951ba51f817c3b0e18c45b46196 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.miRNA-Seq.A.hg38 C3N-03762 LSCC miRNA-Seq tissue_normal CPT0247250009 9cb853a3-c3af-46cb-bcf1-84962b366419_mirnaseq_gdc_realn.bam 357051636 BAM harmonized CPTAC3 5cb067e1-3d7f-47a6-b5d3-ac4444c83c40 6bb9abe7d6dd9ce932dce129c0495377 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.miRNA-Seq.S5_L008_R1.T C3N-03762 LSCC miRNA-Seq tumor CPT0247240009 200224_UNC31-K00269_0267_AHC722BBXY_ACAGTG_S5_L008_R1_001.unaln.bam 256720337 BAM S5_L008_R1 submitted_unaligned CPTAC3 f5b5c460-b34c-4c0d-8783-ccf4e3ad6bba 33f7a6d0752596f921d1ee6553453748 {"aliquot_tag": "ALQ_b648f850", "sample": "S5", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.miRNA-Seq.S7_L001_R1.A C3N-03762 LSCC miRNA-Seq tissue_normal CPT0247250009 200325_UNC31-K00269_0272_AHHC2NBBXY_CACGAT_S7_L001_R1_001.unaln.bam 329110114 BAM S7_L001_R1 submitted_unaligned CPTAC3 980b4850-bd6b-4085-8d83-ad08a467a759 0d8a55a61ecd29dd383a5c8f04a6338e {"aliquot_tag": "ALQ_8b28d1e0", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.miRNA-Seq.T.hg38 C3N-03762 LSCC miRNA-Seq tumor CPT0247240009 851089c1-577f-446d-83fd-df501d1f89d7_mirnaseq_gdc_realn.bam 283692596 BAM harmonized CPTAC3 d7c7db8d-2148-41ea-a277-d45cebb56298 6df4c42f38ce1568826171d81b721c43 {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.RNA-Seq.chimeric.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.chimeric.gdc_realn.bam 88593336 BAM chimeric harmonized CPTAC3 3ffa01bd-d800-4ece-9384-973d5a0afa65 05e63cda5a0b63ab52c53afc00145a67 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.RNA-Seq.chimeric.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.chimeric.gdc_realn.bam 28277960 BAM chimeric harmonized CPTAC3 c75e6109-652e-40e7-89eb-eb21748c40d0 2bed1aa72de457c8fb421e4edd4e2f20 {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.RNA-Seq.genomic.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.genomic.gdc_realn.bam 8311813636 BAM genomic harmonized CPTAC3 860bf7af-4d99-465d-ad25-d25d50fcb432 51cbe81ca65c38409e2b5dfc7b6c58b5 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.RNA-Seq.genomic.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.genomic.gdc_realn.bam 6867389783 BAM genomic harmonized CPTAC3 fb08abb0-0ef7-4d7e-92f4-60ca768872f6 86dd1037de530e73b2c1f58ed2ba67dd {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.RNA-Seq.S15_L004_R1.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R1_001.fastq.gz 4073473721 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 2d8aace6-dfbe-405a-a72d-0e7aad158a73 9e91b5ca4abf9c34a9df1216eb622ae4 {"aliquot_tag": "ALQ_8b28d1e0", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.RNA-Seq.S15_L004_R2.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R2_001.fastq.gz 4341685544 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 1c6eaab0-e5b4-43e4-92c0-cc63d9ea92e8 e548606f23b2c83bbff8e1177d6d3682 {"aliquot_tag": "ALQ_8b28d1e0", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.RNA-Seq.S5_L002_R1.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3340458440 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 eedce802-aab1-49aa-9611-c3a4f3b214b7 51b51b9bf5e15ece7db6b66efaf4c99b {"aliquot_tag": "ALQ_b648f850", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.RNA-Seq.S5_L002_R2.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 3596102940 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 60ece175-202c-4e59-bab5-3acbc69cc22d 3bb00cef5a52ef615aadcee48ed97303 {"aliquot_tag": "ALQ_b648f850", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.RNA-Seq.transcriptome.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.transcriptome.gdc_realn.bam 11281568734 BAM transcriptome harmonized CPTAC3 c6ba9e81-6cd7-4a9f-89fb-da13b5c5e69f dad417b4f0dd81123ce5c1849d243eb3 {"aliquot_tag": "ALQ_8b28d1e0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.RNA-Seq.transcriptome.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.transcriptome.gdc_realn.bam 9651716509 BAM transcriptome harmonized CPTAC3 6ca8a5c1-16ed-42f2-9f5b-e846b2c67df2 77421ca846fad762d2c3f763c22e6bbb {"aliquot_tag": "ALQ_b648f850", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.WGS.N C3N-03762 LSCC WGS blood_normal CPT0247280008 CPT0247280008.WholeGenome.RP-2158.bam 24860619632 BAM submitted_aligned CPTAC3 85fcd93a-688b-402c-8e14-9217d80e090a 217703e1535fa4de4337728271e998c8 {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03762.WGS.N.hg38 C3N-03762 LSCC WGS blood_normal CPT0247280008 f8c7c04c-bf1e-4a8c-9d49-d43de0279a39_wgs_gdc_realn.bam 75682384584 BAM harmonized CPTAC3 83a064b6-a934-408d-93ee-ab41545c75c5 77b00fa54e38d16c99d2d5609a8c5952 {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03762.WGS.T C3N-03762 LSCC WGS tumor CPT0247240006 CPT0247240006.WholeGenome.RP-2158.bam 22764221099 BAM submitted_aligned CPTAC3 32fd25df-344a-464d-8c7c-0bafe85055ec 0257f8fa5c697a3bec7e5f7a907328e4 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.WGS.T.hg38 C3N-03762 LSCC WGS tumor CPT0247240006 a5fe587b-8a3a-411a-99cd-d07dbade113f_wgs_gdc_realn.bam 68324474453 BAM harmonized CPTAC3 959ede3b-d2ab-4799-ad2f-e1e146acf67b aa7c2e61ae2b5a3402102e2efb068ba4 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.WXS.A C3N-03762 LSCC WXS tissue_normal CPT0247250006 CPT0247250006.WholeExome.RP-1303.bam 24695291830 BAM submitted_aligned CPTAC3 b0b166af-f23e-4c08-8725-f9e85e744246 5f702ddc32f11f844735bf54e7b9186e {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.WXS.A.hg38 C3N-03762 LSCC WXS tissue_normal CPT0247250006 0a858089-058f-4884-9d00-c48aceb13e37_wxs_gdc_realn.bam 33415340923 BAM harmonized CPTAC3 7970a8e9-5f75-4cd8-b531-c9ff01875906 d717520661b551ee52cb4c7cde5ce26a {"aliquot_tag": "ALQ_1b97cc71", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03762.WXS.N C3N-03762 LSCC WXS blood_normal CPT0247280008 CPT0247280008.WholeExome.RP-1303.bam 22781704561 BAM submitted_aligned CPTAC3 0ca29e67-33ac-47d4-a069-39a19e0409e0 ba1c1b2eaecacbd4bf0586fbdbbaf67c {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03762.WXS.N.hg38 C3N-03762 LSCC WXS blood_normal CPT0247280008 f8c7c04c-bf1e-4a8c-9d49-d43de0279a39_wxs_gdc_realn.bam 30722675897 BAM harmonized CPTAC3 4c2c3705-fbf8-4cf7-a018-9cf4ad4b56a8 9cc18633b8b7ed3e1a294f5884063f55 {"aliquot_tag": "ALQ_4bf25c7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03762.WXS.T C3N-03762 LSCC WXS tumor CPT0247240006 CPT0247240006.WholeExome.RP-1303.bam 23013134639 BAM submitted_aligned CPTAC3 2ceb8166-fcd6-4f52-83a4-c5cdc2ad49fb a0802332dcb471d68f074d60069e5312 {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03762.WXS.T.hg38 C3N-03762 LSCC WXS tumor CPT0247240006 a5fe587b-8a3a-411a-99cd-d07dbade113f_wxs_gdc_realn.bam 31910219948 BAM harmonized CPTAC3 c340017f-e45f-45f8-88aa-5cf74bd8485a 3675eababba9e43fc93939f0d1956cfa {"aliquot_tag": "ALQ_26f7e5c1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03764.MethArray.Green.A C3N-03764 LUAD Methylation_Array tissue_normal CPT0246040006 203561620095_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 f5b71248-df6d-4e9a-b9e4-c3a03b0dad93 d2489fd98b9276c1e018d46d1ba0a247 {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.MethArray.Green.T C3N-03764 LUAD Methylation_Array tumor CPT0246030006 203561450103_R04C01_Grn.idat 13676216 IDAT Green NA CPTAC3 91558040-753b-47dd-92b5-985992e1547d a60ed2287210ad5d9f0dc00af803ce31 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.MethArray.Red.A C3N-03764 LUAD Methylation_Array tissue_normal CPT0246040006 203561620095_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 42450cab-48d9-4782-88c1-e3c8277c4a1a 0e927c4490f6d2821a2d9a1be5dd0a38 {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.MethArray.Red.T C3N-03764 LUAD Methylation_Array tumor CPT0246030006 203561450103_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 5092a8c9-f0e1-4126-868f-1f48890b7005 214fbd1946098dcf731da3127dbda8e7 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.miRNA-Seq.A.hg38 C3N-03764 LUAD miRNA-Seq tissue_normal CPT0246040009 1bde88c1-2ed0-4142-be07-0ba40d2948a0_mirnaseq_gdc_realn.bam 254516986 BAM harmonized CPTAC3 05779cdd-24fb-4287-89b5-7b18873fb688 839bbedc677823dd8017daff8cae77a0 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.miRNA-Seq.S146_L007_R1.T C3N-03764 LUAD miRNA-Seq tumor CPT0246030009 190828_UNC32-K00270_0200_BH7GVJBBXY_TCATTC_S146_L007_R1_001.unaln.bam 180554577 BAM S146_L007_R1 submitted_unaligned CPTAC3 296ffecd-04d0-4c8f-bd1f-4c001ed1e90c 8bd5ebc2a275f989a777713528f705e3 {"aliquot_tag": "ALQ_efd78eff", "sample": "S146", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.miRNA-Seq.S43_L007_R1.A C3N-03764 LUAD miRNA-Seq tissue_normal CPT0246040009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGGCC_S43_L007_R1_001.unaln.bam 216989357 BAM S43_L007_R1 submitted_unaligned CPTAC3 fe2f153f-b22d-4ace-bd0d-5d92d0a1e9c3 11e1c1b9e162324506a6135fa496fb78 {"aliquot_tag": "ALQ_5df752ef", "sample": "S43", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.miRNA-Seq.T.hg38 C3N-03764 LUAD miRNA-Seq tumor CPT0246030009 0e59d975-0e9f-4064-9998-859c218462c3_mirnaseq_gdc_realn.bam 199331989 BAM harmonized CPTAC3 8cb50e62-8920-4b1a-9b7c-e1e25d2d8768 9cf26072ad97851d3ade8e70abce9ffa {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.RNA-Seq.chimeric.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.chimeric.gdc_realn.bam 36114609 BAM chimeric harmonized CPTAC3 2e178b91-f4a6-4154-bbdd-401259553bd5 67d59bc88c93ec2d8dd21bf228c8c3d5 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.RNA-Seq.chimeric.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.chimeric.gdc_realn.bam 20885227 BAM chimeric harmonized CPTAC3 6cc40666-fdae-48bc-86f5-594bbf62b14e 82ae87dfc0366babc6dd215a604c75b7 {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.RNA-Seq.genomic.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.genomic.gdc_realn.bam 7782960355 BAM genomic harmonized CPTAC3 ea8d5406-accd-4287-8184-4753af827d9a c93e7ef86a038f46eec1747765513594 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.RNA-Seq.genomic.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.genomic.gdc_realn.bam 12644170522 BAM genomic harmonized CPTAC3 66f18147-198d-4a60-9114-7ff9ba7cd75d ba7dd51975fe6faaa65fe00874433146 {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.RNA-Seq.S10_L003_R1.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R1_001.fastq.gz 3318022252 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 91751b20-d366-4f86-b744-0d697d0a38db 78f822294c5fc4973c8385dd4efda317 {"aliquot_tag": "ALQ_efd78eff", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.RNA-Seq.S10_L003_R2.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R2_001.fastq.gz 3789747377 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 19321d88-2e65-4487-8543-35536d48bd3b c7717afba1122648fe40402fd8112d64 {"aliquot_tag": "ALQ_efd78eff", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.RNA-Seq.S3_L001_R1.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3030574716 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 746c6586-5eee-4009-9f7b-ad0ecbc3d7e1 cef42e7ab7bd0b473aaf6ca58bbe0d12 {"aliquot_tag": "ALQ_5df752ef", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.RNA-Seq.S3_L001_R2.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 3628983578 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 eb8206f8-4a64-4e92-96b2-820c0be176f9 25eab66c63138702d6710b163ef1e5ab {"aliquot_tag": "ALQ_5df752ef", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.RNA-Seq.transcriptome.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.transcriptome.gdc_realn.bam 7987634173 BAM transcriptome harmonized CPTAC3 f92e8034-d631-4c43-975a-8b9f453b7bb3 a4ada6f555b1d55d8a7f06b64d1d7323 {"aliquot_tag": "ALQ_5df752ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.RNA-Seq.transcriptome.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.transcriptome.gdc_realn.bam 8483973742 BAM transcriptome harmonized CPTAC3 afebc08a-3853-4d6f-837d-61b8887aa59d e5dc25f3d01559c3f630b61889a7ea06 {"aliquot_tag": "ALQ_efd78eff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.WGS.N C3N-03764 LUAD WGS blood_normal CPT0246070002 CPT0246070002.WholeGenome.RP-1303.bam 68558131283 BAM submitted_aligned CPTAC3 353bfd86-90f5-48af-b4eb-c1b0debc2bef 5be56079b734c4522884d1c627bfc4d2 {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03764.WGS.N.hg38 C3N-03764 LUAD WGS blood_normal CPT0246070002 6fd426f8-0858-4065-98e6-df2c1651774b_wgs_gdc_realn.bam 99778126754 BAM harmonized CPTAC3 4334fe61-4e0f-46bb-81ed-f1bf83fba41b 410dc04a6cfbcff38a5a1a400fe9d2ff {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03764.WGS.T C3N-03764 LUAD WGS tumor CPT0246030006 CPT0246030006.WholeGenome.RP-1303.bam 76288762672 BAM submitted_aligned CPTAC3 896b718b-9b15-43c7-9caa-ba83e4256a1e bd0195a8457f26d30642079007908059 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.WGS.T.hg38 C3N-03764 LUAD WGS tumor CPT0246030006 66d4a838-4adc-4374-9422-a19d26ead31b_wgs_gdc_realn.bam 114646116482 BAM harmonized CPTAC3 957b7c6c-7ef6-4fae-bbf5-785a98e6ad0e 6c903cbdc68661a78f82561112cb9a16 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.WXS.A C3N-03764 LUAD WXS tissue_normal CPT0246040006 CPT0246040006.WholeExome.RP-1303.bam 27117190741 BAM submitted_aligned CPTAC3 bc87761c-cce5-4367-ac3f-65a3074b7f8f 7f1d1ff881df16e797fa0b3b8f600fbd {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.WXS.A.hg38 C3N-03764 LUAD WXS tissue_normal CPT0246040006 8a8d6b5d-f3bb-4b4c-aca2-c599b67b6fe8_wxs_gdc_realn.bam 37627749886 BAM harmonized CPTAC3 5a59945a-46e1-4a7c-b628-621b0e56093e 69b9b5dac77b64b9bdc251c7edcc3680 {"aliquot_tag": "ALQ_cd484f7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03764.WXS.N C3N-03764 LUAD WXS blood_normal CPT0246070002 CPT0246070002.WholeExome.RP-1303.bam 33266984565 BAM submitted_aligned CPTAC3 c687e16f-c7b8-4114-be30-fba53984fc89 689b3c7c59e995182e81581985f13e65 {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03764.WXS.N.hg38 C3N-03764 LUAD WXS blood_normal CPT0246070002 6fd426f8-0858-4065-98e6-df2c1651774b_wxs_gdc_realn.bam 45938957309 BAM harmonized CPTAC3 4fa6d887-632a-4f1c-9762-52785e4cd303 56c749ee41162ae87bf5821c59a5ba5f {"aliquot_tag": "ALQ_8d85f1b7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03764.WXS.T C3N-03764 LUAD WXS tumor CPT0246030006 CPT0246030006.WholeExome.RP-1303.bam 25026190975 BAM submitted_aligned CPTAC3 b6c220ca-2c63-4389-9359-0abc33559afa c89dfe2b0c6dfbbe6a1297491ef6fa93 {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03764.WXS.T.hg38 C3N-03764 LUAD WXS tumor CPT0246030006 66d4a838-4adc-4374-9422-a19d26ead31b_wxs_gdc_realn.bam 34291962151 BAM harmonized CPTAC3 9591a9e1-b863-4ffc-84e9-77668d2b7179 b1b44e53089863af0f4fe26d63c8ad9c {"aliquot_tag": "ALQ_7f68936e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.MethArray.Green.A C3N-03765 LUAD Methylation_Array tissue_normal CPT0247200006 203561620049_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 3973bd79-96d7-4a91-99e1-be68b8d91e04 72974957dc46a5b3c7c124522bf26e86 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.MethArray.Green.T C3N-03765 LUAD Methylation_Array tumor CPT0247190006 203561620085_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 068dee9b-a368-4217-9e66-f0a2d475ee24 bcf30027919929a3cbe291e82ecea67a {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.MethArray.Red.A C3N-03765 LUAD Methylation_Array tissue_normal CPT0247200006 203561620049_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 cb811be7-3349-46ad-9a68-87fc4222ef4a ea93aeb575446667b31b6a9b22598758 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.MethArray.Red.T C3N-03765 LUAD Methylation_Array tumor CPT0247190006 203561620085_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 99464054-130f-4d7a-88d1-44b5a78dff22 c3a6e49324aa9428eb54b7aea07ff696 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.miRNA-Seq.A.hg38 C3N-03765 LUAD miRNA-Seq tissue_normal CPT0247200009 31113c3f-ff40-42e8-863e-b75dfb0c7ff3_mirnaseq_gdc_realn.bam 277765805 BAM harmonized CPTAC3 aa6a030d-3073-42f2-9d10-cdc63d81fdb7 08fff1d000d4969213a9bf999eaf2992 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.miRNA-Seq.S35_L004_R1.T C3N-03765 LUAD miRNA-Seq tumor CPT0247190009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAATCG_S35_L004_R1_001.unaln.bam 203104741 BAM S35_L004_R1 submitted_unaligned CPTAC3 fb75cd8b-09b3-49c2-a2f1-c558725b4196 243fa191ad56a5c5d469c14a45724b11 {"aliquot_tag": "ALQ_c84c4e4f", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.miRNA-Seq.S3_L005_R1.A C3N-03765 LUAD miRNA-Seq tissue_normal CPT0247200009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGATC_S3_L005_R1_001.unaln.bam 247343253 BAM S3_L005_R1 submitted_unaligned CPTAC3 9b16f11b-40b3-47c3-896f-ed90af9d27c7 97cd726af9bc2c169ef546bb85e4df24 {"aliquot_tag": "ALQ_43c85e90", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.miRNA-Seq.T.hg38 C3N-03765 LUAD miRNA-Seq tumor CPT0247190009 db7a6af3-754c-4a99-ae31-c1d13bbe08c1_mirnaseq_gdc_realn.bam 222978776 BAM harmonized CPTAC3 a09bf700-1bc0-4f72-b404-3bb964f1ba93 36167127b4856da2192f7eca32c73447 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.RNA-Seq.chimeric.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.chimeric.gdc_realn.bam 40729552 BAM chimeric harmonized CPTAC3 32c980df-1563-4664-a501-15d42695fc75 423174ad2cb97a4bb65c163a067346d4 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.RNA-Seq.chimeric.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.chimeric.gdc_realn.bam 28558648 BAM chimeric harmonized CPTAC3 b5a4a810-67fe-4bd5-861c-dd0df1988032 8ba573f7ec86ffbfc6e77724f0644f02 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.RNA-Seq.genomic.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.genomic.gdc_realn.bam 12297778340 BAM genomic harmonized CPTAC3 e210e3ad-a591-41f9-8190-3d1b92c8b829 c34dfdad6ee787128aa8f243eadb2da7 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.RNA-Seq.genomic.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.genomic.gdc_realn.bam 13400865327 BAM genomic harmonized CPTAC3 f77f13f3-54b7-453e-86b3-a300faec4435 8068c2b064f573315df84502f12fd421 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.RNA-Seq.S14_L004_R1.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R1_001.fastq.gz 4116993420 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 295cd9a0-a958-4712-8537-cf9f29c46657 68c525fa29464225015e5be8b6896649 {"aliquot_tag": "ALQ_c84c4e4f", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.RNA-Seq.S14_L004_R2.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R2_001.fastq.gz 4693410122 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 7d1a1e74-f916-4eaf-9f92-63f2052bf10f 914cc51b3ceea15a2b29f9ea446ee24e {"aliquot_tag": "ALQ_c84c4e4f", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.RNA-Seq.S17_L005_R1.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R1_001.fastq.gz 4020199598 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 9ffe5ebe-6755-4cce-a8a3-f78a8dfe4a60 aa2808dec856d34059b074c7b7708388 {"aliquot_tag": "ALQ_43c85e90", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.RNA-Seq.S17_L005_R2.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R2_001.fastq.gz 4493721084 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 9a4769fa-9da5-4b48-8bae-cd3c3ae4a321 f9d7c3ddf6711d825165d13454f74147 {"aliquot_tag": "ALQ_43c85e90", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.RNA-Seq.transcriptome.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.transcriptome.gdc_realn.bam 8933045027 BAM transcriptome harmonized CPTAC3 fc46fa86-8ceb-4004-aa7e-13b7ba3cf5f8 619ecfb8c4de52267855a90621df35b0 {"aliquot_tag": "ALQ_43c85e90", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.RNA-Seq.transcriptome.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.transcriptome.gdc_realn.bam 9973484739 BAM transcriptome harmonized CPTAC3 b16fa310-58f0-4090-b61e-d067944f654b 06699d5cbb74eb4e0395b608b23399f6 {"aliquot_tag": "ALQ_c84c4e4f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.WGS.N C3N-03765 LUAD WGS blood_normal CPT0247230002 CPT0247230002.WholeGenome.RP-1303.bam 69883287120 BAM submitted_aligned CPTAC3 9ddae3ef-7094-4eef-a077-b65f39b90efb 82deb10b7a7c9b379561986f0f06bb87 {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03765.WGS.N.hg38 C3N-03765 LUAD WGS blood_normal CPT0247230002 34da4eaa-aea2-4b64-b944-99f5f726926e_wgs_gdc_realn.bam 101718894326 BAM harmonized CPTAC3 5fe7f154-ec05-4c4d-ac14-6305dcf27d4e 8892befbfe315f30869e070518ec577f {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03765.WGS.T C3N-03765 LUAD WGS tumor CPT0247190006 CPT0247190006.WholeGenome.RP-1303.bam 62203165112 BAM submitted_aligned CPTAC3 2bfcd397-dd79-423f-bde9-fd38ed90d106 f4cdfa82a770295b56259b6b6fa53b9b {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.WGS.T.hg38 C3N-03765 LUAD WGS tumor CPT0247190006 0c0db7ea-9c14-4f39-b060-627ac82834df_wgs_gdc_realn.bam 90633397157 BAM harmonized CPTAC3 b7d9a101-6965-4441-89c5-95b91494d175 fb9478edad98c0ef081b8449025d3d92 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.WXS.A C3N-03765 LUAD WXS tissue_normal CPT0247200006 CPT0247200006.WholeExome.RP-1303.bam 20740648145 BAM submitted_aligned CPTAC3 03d99d94-87ed-4ad9-a8cc-3374ebd0c0a7 e04281a6691c564695a7483bffe58073 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.WXS.A.hg38 C3N-03765 LUAD WXS tissue_normal CPT0247200006 fe3bcdf6-d768-4d1c-bf7f-1a05ee6fca0f_wxs_gdc_realn.bam 28935157062 BAM harmonized CPTAC3 e79d506e-3604-4468-ae1e-285da665f359 2e39633c3f65ee28dfe132806720dfd4 {"aliquot_tag": "ALQ_d3774301", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03765.WXS.N C3N-03765 LUAD WXS blood_normal CPT0247230002 CPT0247230002.WholeExome.RP-1303.bam 30324163910 BAM submitted_aligned CPTAC3 ef7a32f4-0903-46de-967e-f8e68d47c883 7593b30b0cddf39be3b5f7271b9c7d71 {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03765.WXS.N.hg38 C3N-03765 LUAD WXS blood_normal CPT0247230002 34da4eaa-aea2-4b64-b944-99f5f726926e_wxs_gdc_realn.bam 41953162172 BAM harmonized CPTAC3 3685a804-d037-4f73-a373-1e3d88966c3b ac4a7b22472984337a0179d9f9e58b5f {"aliquot_tag": "ALQ_93bafdc8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03765.WXS.T C3N-03765 LUAD WXS tumor CPT0247190006 CPT0247190006.WholeExome.RP-1303.bam 29885259416 BAM submitted_aligned CPTAC3 0f673011-de27-4ec0-989e-48936458edc8 56a5269d70a5dfc279ad055185ad2ca1 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03765.WXS.T.hg38 C3N-03765 LUAD WXS tumor CPT0247190006 0c0db7ea-9c14-4f39-b060-627ac82834df_wxs_gdc_realn.bam 41335772700 BAM harmonized CPTAC3 d4433296-1a9c-4d8e-bef9-c43fcaf31a03 1a4844cba8b067e1d82fc2359409e946 {"aliquot_tag": "ALQ_58f353de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03767.MethArray.Green.T C3N-03767 UCEC Methylation_Array tumor CPT0247970006 203561620077_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0dc4873e-39b5-4501-ba69-9aac288f3973 88f9a151d62efe0ecb35dd68d553ceed {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.MethArray.Red.T C3N-03767 UCEC Methylation_Array tumor CPT0247970006 203561620077_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 b554dcaa-e494-496d-a188-e21bbdddfbcd c7f95b5433df6f10de299c71080a104e {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.miRNA-Seq.S8_L001_R1.T C3N-03767 UCEC miRNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L001_R1_001.unaln.bam 238996539 BAM S8_L001_R1 submitted_unaligned CPTAC3 d11de997-e34f-496b-9297-91f04e56df92 515501920160ad98cda1094f22f5a75d {"aliquot_tag": "ALQ_9b2f7243", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.miRNA-Seq.T.hg38 C3N-03767 UCEC miRNA-Seq tumor CPT0247970009 f49402bc-efc2-49ab-9925-9b4b1decabb7_mirnaseq_gdc_realn.bam 265433972 BAM harmonized CPTAC3 d6892e25-142a-4d11-aa54-85da8e05cbdb 892a0e75384a95593fbf0d30242aeb27 {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.chimeric.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.chimeric.gdc_realn.bam 34760137 BAM chimeric harmonized CPTAC3 02e98a26-ffbe-424a-a438-1caec7898e37 033cd094f2b6969d1df7ce780c3e7420 {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.chimeric.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.chimeric.gdc_realn.bam 89186223 BAM chimeric harmonized CPTAC3 571344aa-7eec-4a9c-9f1f-5d5651871e60 f38d97d71df87e9dec932fc30be890f6 {"aliquot_tag": "ALQ_21beaa4c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.genomic.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.genomic.gdc_realn.bam 8121193570 BAM genomic harmonized CPTAC3 d0fda6fc-2ab2-4268-ab69-1ad263bcedfc 92b0ef32c6e9ad8cc1b9ff7b4fecc095 {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.genomic.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.genomic.gdc_realn.bam 7124132949 BAM genomic harmonized CPTAC3 f1f0da13-4fa5-4040-bc7e-71c48d471498 c629b595d4d02ec1f37fbd577af136f5 {"aliquot_tag": "ALQ_21beaa4c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.S17_L005_R1.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R1_001.fastq.gz 4133180720 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 c908803c-3935-4016-950c-87170439cf92 9f2383e26805c3de59eb2e70dcaa7f6a {"aliquot_tag": "ALQ_9b2f7243", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.S17_L005_R2.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R2_001.fastq.gz 4499270582 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 3e24a777-67f7-4371-bf56-f5ab2a8dc9b2 53f732c5495839b5b9966feab3f1f401 {"aliquot_tag": "ALQ_9b2f7243", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.S60_R1.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R1_001.fastq.gz 5241227135 FASTQ S60_R1 submitted_unaligned CPTAC3 333794c4-d00b-4ba4-b1e2-965d03cde411 3658ba752d68606cc550f24707419bc9 {"aliquot_tag": "ALQ_21beaa4c", "sample": "S60", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.S60_R2.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R2_001.fastq.gz 5434732832 FASTQ S60_R2 submitted_unaligned CPTAC3 e76352e6-b50c-4f8e-bf35-0bb459e223b5 63f6469fca19dca6fd32a5883f4f1321 {"aliquot_tag": "ALQ_21beaa4c", "sample": "S60", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.transcriptome.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.transcriptome.gdc_realn.bam 12650539887 BAM transcriptome harmonized CPTAC3 80021664-1948-47cc-a89b-4ecd231b1805 08b48416bda29194393c22c04156a08d {"aliquot_tag": "ALQ_9b2f7243", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.RNA-Seq.transcriptome.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.transcriptome.gdc_realn.bam 6127456768 BAM transcriptome harmonized CPTAC3 f85cc2a9-e9eb-4985-8bd0-cea4db7637d4 5976bee5e45ff2c4299dacdfb6e57cde {"aliquot_tag": "ALQ_21beaa4c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.WGS.N C3N-03767 UCEC WGS blood_normal CPT0247990002 CPT0247990002.WholeGenome.RP-1303.bam 80851906879 BAM submitted_aligned CPTAC3 1017a00f-e2db-49f0-b50e-5f23ebb7e222 13fb9a19f357c331a427e6d2a1e15ff6 {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03767.WGS.N.hg38 C3N-03767 UCEC WGS blood_normal CPT0247990002 87e2f29e-c115-408e-88e6-6f3baa0f4c1a_wgs_gdc_realn.bam 119337073391 BAM harmonized CPTAC3 ed956fcc-1f64-47dc-acaa-530cf90cbce7 8f72ca46944223c975f6e41fe44b550f {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03767.WGS.T C3N-03767 UCEC WGS tumor CPT0247970006 CPT0247970006.WholeGenome.RP-1303.bam 78588737004 BAM submitted_aligned CPTAC3 ac7e93ef-6643-4c14-84de-5f6248c4e068 2bba2dfdc2b80595fcbc7f58d354a236 {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.WGS.T.hg38 C3N-03767 UCEC WGS tumor CPT0247970006 2a166a00-dd48-41e2-86b5-688cde569669_wgs_gdc_realn.bam 116217897947 BAM harmonized CPTAC3 65002874-43a9-43ce-8bb1-bf61c0b0980a f4c9109accb4699ec4292bd4af88e743 {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.WXS.N C3N-03767 UCEC WXS blood_normal CPT0247990002 CPT0247990002.WholeExome.RP-1303.bam 18998341689 BAM submitted_aligned CPTAC3 3845190b-60c4-4375-9730-0036c80d989e e91fccc6e231a7fea541924359f20f91 {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03767.WXS.N.hg38 C3N-03767 UCEC WXS blood_normal CPT0247990002 87e2f29e-c115-408e-88e6-6f3baa0f4c1a_wxs_gdc_realn.bam 25885137145 BAM harmonized CPTAC3 df8aadf4-224d-4c03-8239-3ba94f3a109d 32a7cab7e4ba74a3ad11ca007be65a3c {"aliquot_tag": "ALQ_b3cd15aa", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03767.WXS.T C3N-03767 UCEC WXS tumor CPT0247970006 CPT0247970006.WholeExome.RP-1303.bam 24308911840 BAM submitted_aligned CPTAC3 dc86ad85-2ffe-4ebb-85a6-40a1e1e30114 c776be835e26afaeba06a86e6a174c2d {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03767.WXS.T.hg38 C3N-03767 UCEC WXS tumor CPT0247970006 2a166a00-dd48-41e2-86b5-688cde569669_wxs_gdc_realn.bam 34066669602 BAM harmonized CPTAC3 348808fa-7a4c-4980-b745-04013cf4e1af 4da0718e93238a47c37a19cfc871faae {"aliquot_tag": "ALQ_b906fd2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.MethArray.Green.A C3N-03778 PDA Methylation_Array tissue_normal CPT0246900006 203561620016_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 8204757d-9253-4aff-a29d-98573e40b8ac 3cc0b576af6d8d89c83260e50f18e4b5 {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03778.MethArray.Green.T C3N-03778 PDA Methylation_Array tumor CPT0246890006 203561620153_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b4be4914-9c05-41b7-9a47-cb0bdbb3c0a0 13f176c825cfc3e05f99716a6a7c167e {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.MethArray.Red.A C3N-03778 PDA Methylation_Array tissue_normal CPT0246900006 203561620016_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 76b735f2-6122-479d-a87b-3b2edeb0d16e 9c8ce5fddfa81a6f9238a7a1c2736756 {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03778.MethArray.Red.T C3N-03778 PDA Methylation_Array tumor CPT0246890006 203561620153_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 aeaaf74d-7228-4af6-9123-114427e2f887 376c8e648045023f1e2a2549417834f1 {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.miRNA-Seq.S39_L004_R1.T C3N-03778 PDA miRNA-Seq tumor CPT0246890009 190813_UNC32-K00270_0196_AH5MCWBBXY_TAGCTT_S39_L004_R1_001.unaln.bam 289370923 BAM S39_L004_R1 submitted_unaligned CPTAC3 53cab8d5-e5dc-4a9f-87f3-59eada94071b 4fdfb5b6b7294be3261a634825812258 {"aliquot_tag": "ALQ_49341433", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.miRNA-Seq.T.hg38 C3N-03778 PDA miRNA-Seq tumor CPT0246890009 29558d21-bd5a-4266-b99e-c6e0d17e4023_mirnaseq_gdc_realn.bam 322001244 BAM harmonized CPTAC3 c3701090-ae6a-4590-a4bc-25ae3bd43b82 1afe7e1f906b80ca0899dc0a51ffd1a9 {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.RNA-Seq.chimeric.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.chimeric.gdc_realn.bam 204927441 BAM chimeric harmonized CPTAC3 9ba5d2f8-990d-4956-ad4e-7083ae082135 9864d971fc74a9f3a87ae11a3b11b099 {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.RNA-Seq.genomic.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.genomic.gdc_realn.bam 9628306782 BAM genomic harmonized CPTAC3 a86e3026-a318-4ed5-b0e2-9a9bed8e603b 84bec7d0307be02cffbd8ed6533ee705 {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.RNA-Seq.S7_L002_R1.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R1_001.fastq.gz 3534292099 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 d7e0f140-c87d-4ea7-98a5-5b7da9618454 6903490e4d363e009439b464b67a81d6 {"aliquot_tag": "ALQ_49341433", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.RNA-Seq.S7_L002_R2.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R2_001.fastq.gz 3526112851 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 ba8b7185-1e3a-43ed-bf0a-7d82c45f4a36 69d9a77920bfa7b65deca29592f3a0ea {"aliquot_tag": "ALQ_49341433", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.RNA-Seq.transcriptome.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.transcriptome.gdc_realn.bam 7299198706 BAM transcriptome harmonized CPTAC3 b0d238f1-268f-4c73-8c48-6137b6637db4 42f40f3de86d1cfd73b0046e290d8e7c {"aliquot_tag": "ALQ_49341433", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.WGS.N C3N-03778 PDA WGS blood_normal CPT0246930002 CPT0246930002.WholeGenome.RP-1303.bam 62952665777 BAM submitted_aligned CPTAC3 0f4d1b52-b733-49e7-bc05-c006ca2d27d9 3cc868de22fe860a04f85a3f541c3088 {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03778.WGS.N.hg38 C3N-03778 PDA WGS blood_normal CPT0246930002 d67e4443-bcf8-4f42-9722-9411f15f1254_wgs_gdc_realn.bam 91696186683 BAM harmonized CPTAC3 30b95e68-12f4-4533-9da9-24bf70dbd1ab 74b606c05d61d6873ee73e93252d5e3a {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03778.WGS.T C3N-03778 PDA WGS tumor CPT0246890006 CPT0246890006.WholeGenome.RP-1303.bam 131310222249 BAM submitted_aligned CPTAC3 108ebdf9-6be0-4f3f-84d1-4f469ff1b4ea 52e4d77d38d3e8edd2fa3b763dd906b1 {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.WGS.T.hg38 C3N-03778 PDA WGS tumor CPT0246890006 d3ca6302-3d9e-42ab-9cdd-3cd707ef3da9_wgs_gdc_realn.bam 190708884638 BAM harmonized CPTAC3 a0cbb360-c8e0-4cf6-8f92-4b23e1e78671 326f3e8d428a4ed26e76fcd94afa9e0f {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.WXS.A C3N-03778 PDA WXS tissue_normal CPT0246900006 CPT0246900006.WholeExome.RP-1303.bam 26213184887 BAM submitted_aligned CPTAC3 2401420a-9755-4e72-ad26-9049c6d7d055 cd1be217f83c0264f89266b51b6e523a {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03778.WXS.A.hg38 C3N-03778 PDA WXS tissue_normal CPT0246900006 2aa55b22-80ed-4325-b6cf-8a9971f119d2_wxs_gdc_realn.bam 36094012340 BAM harmonized CPTAC3 3536c4a5-3ccd-48d2-9099-a7ff93eb94ec 4882707d57b8e084c5ff627a239e23ff {"aliquot_tag": "ALQ_1fc7b876", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03778.WXS.N C3N-03778 PDA WXS blood_normal CPT0246930002 CPT0246930002.WholeExome.RP-1303.bam 26954836770 BAM submitted_aligned CPTAC3 43fca253-e7c5-4702-8dd4-dd86a45cd531 95adc4a37dd70af45834b42663bd2e0f {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03778.WXS.N.hg38 C3N-03778 PDA WXS blood_normal CPT0246930002 d67e4443-bcf8-4f42-9722-9411f15f1254_wxs_gdc_realn.bam 37390023306 BAM harmonized CPTAC3 d3aaa792-18f6-428f-a91c-a698b76e62da b1fb64428a20f7021feb1fb4e092dd39 {"aliquot_tag": "ALQ_5f0a06bf", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03778.WXS.T C3N-03778 PDA WXS tumor CPT0246890006 CPT0246890006.WholeExome.RP-1303.bam 56073451607 BAM submitted_aligned CPTAC3 4ba7525c-80ae-40a0-98de-726d2a76338e d276ca25078ae1a5d9dc37bd54eecdff {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03778.WXS.T.hg38 C3N-03778 PDA WXS tumor CPT0246890006 d3ca6302-3d9e-42ab-9cdd-3cd707ef3da9_wxs_gdc_realn.bam 78260223212 BAM harmonized CPTAC3 cb5f101d-5e27-4771-a3b4-eb734be41f07 4c748301e0e363aca2c14010fc0edd5a {"aliquot_tag": "ALQ_d98b09a2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03780.MethArray.Green.A C3N-03780 PDA Methylation_Array tissue_normal CPT0246950006 203561450027_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 94a1db7c-3378-4a49-9094-c42f9d7f8178 c254d5f03df52efd9db7c6e143d80065 {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.MethArray.Green.T C3N-03780 PDA Methylation_Array tumor CPT0246940006 203561620086_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 54fcd1c0-c19f-438d-ae81-006cd5d39c5d ce59d08e01416c32296c6543b53d5142 {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.MethArray.Red.A C3N-03780 PDA Methylation_Array tissue_normal CPT0246950006 203561450027_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 44e826c6-4adc-4850-a560-a9b5df483d9e 46285e3da500125d0f35873396c602c6 {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.MethArray.Red.T C3N-03780 PDA Methylation_Array tumor CPT0246940006 203561620086_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 67e130b1-74a1-4fea-89a0-62dda908246d c33556a4d3785a6748d33c66a0f3555c {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.miRNA-Seq.A.hg38 C3N-03780 PDA miRNA-Seq tissue_normal CPT0246950009 d10ad329-7193-48b0-be57-6b6a8c93a4aa_mirnaseq_gdc_realn.bam 336591301 BAM harmonized CPTAC3 6db2efe0-a69f-4d83-9e12-b0400534f345 dfa37ccd87f635c4a49a8a96bc08ccbe {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.miRNA-Seq.S147_L007_R1.A C3N-03780 PDA miRNA-Seq tissue_normal CPT0246950009 190828_UNC32-K00270_0200_BH7GVJBBXY_GTAGAG_S147_L007_R1_001.unaln.bam 303680640 BAM S147_L007_R1 submitted_unaligned CPTAC3 bccddcc3-5858-4146-9a8b-2e1f96a4f58b e0fec5372ade2554809f8b93cadc010e {"aliquot_tag": "ALQ_47982a97", "sample": "S147", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.miRNA-Seq.S169_L007_R1.T C3N-03780 PDA miRNA-Seq tumor CPT0246940009 190828_UNC32-K00270_0200_BH7GVJBBXY_GGCTAC_S169_L007_R1_001.unaln.bam 433311583 BAM S169_L007_R1 submitted_unaligned CPTAC3 47229dd3-65d5-420c-be47-6cc18c907f59 1dd783dc384986a95d78c80d38067ffa {"aliquot_tag": "ALQ_7af80327", "sample": "S169", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.miRNA-Seq.T.hg38 C3N-03780 PDA miRNA-Seq tumor CPT0246940009 17319d5e-7745-4f16-89d6-faefe5c5cd34_mirnaseq_gdc_realn.bam 483301628 BAM harmonized CPTAC3 7177ad7e-3dbd-4a40-a672-213f91d96edf 4f1199f89cbcef326907e000f64dd50b {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.RNA-Seq.chimeric.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.chimeric.gdc_realn.bam 226483136 BAM chimeric harmonized CPTAC3 4640acad-b36b-40d5-9f6f-3d6ea1b2b3d6 cc8a7157c57f8908dcb5423c64440bd3 {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.RNA-Seq.chimeric.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.chimeric.gdc_realn.bam 167253304 BAM chimeric harmonized CPTAC3 0b24c636-262a-4886-92d1-3410da853b7c 67b58ed4d67dfd4b0b4fe9894f3fee22 {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.RNA-Seq.genomic.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.genomic.gdc_realn.bam 11547427393 BAM genomic harmonized CPTAC3 708e847e-6938-4f9f-b75f-c1fc00f96bee c296e6618e1fdb12506a5d841ed93cb2 {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.RNA-Seq.genomic.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.genomic.gdc_realn.bam 7016295415 BAM genomic harmonized CPTAC3 17878623-f468-4d8a-9a50-8af180376310 6547eef93477cae145ef5c63560a60fc {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.RNA-Seq.S22_L005_R1.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R1_001.fastq.gz 4567717714 FASTQ S22_L005_R1 submitted_unaligned CPTAC3 8108edeb-bd18-486f-be0f-772a1af60742 35937ccdccaea166c209cc232f38a9a5 {"aliquot_tag": "ALQ_47982a97", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.RNA-Seq.S22_L005_R2.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R2_001.fastq.gz 4637049645 FASTQ S22_L005_R2 submitted_unaligned CPTAC3 ba1a9248-3c0d-42a8-86a6-4c34d80ce349 203a960d8f3376d3d2a2c9be635318f7 {"aliquot_tag": "ALQ_47982a97", "sample": "S22", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.RNA-Seq.S8_L002_R1.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R1_001.fastq.gz 2545110771 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 7a4726d6-a4ec-4223-8097-7a98ac3eb16d 3c2d82d25c3e3f8da7d8d2043228c299 {"aliquot_tag": "ALQ_7af80327", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.RNA-Seq.S8_L002_R2.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R2_001.fastq.gz 2534465613 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 67b965f0-79ad-41e6-bbfe-d0901c2b7e7e b2d77ed0d84542a20327117406a9acc3 {"aliquot_tag": "ALQ_7af80327", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.RNA-Seq.transcriptome.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.transcriptome.gdc_realn.bam 11409848911 BAM transcriptome harmonized CPTAC3 5d82d6a6-9447-4b40-9e8e-802549ace4e0 af0711a4d4eab50fc53bbc4420ab9e9a {"aliquot_tag": "ALQ_47982a97", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.RNA-Seq.transcriptome.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.transcriptome.gdc_realn.bam 5395483709 BAM transcriptome harmonized CPTAC3 7f0ec245-fbdb-4d55-80de-319f223fc59f 8407caa38eb0e2325f181458c7f3c9e2 {"aliquot_tag": "ALQ_7af80327", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.WGS.N C3N-03780 PDA WGS blood_normal CPT0246980002 CPT0246980002.WholeGenome.RP-1303.bam 61941393923 BAM submitted_aligned CPTAC3 7b255e10-6cad-46c0-9e3f-013902837ca4 8126b294dbfc603e728d7890051daf58 {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03780.WGS.N.hg38 C3N-03780 PDA WGS blood_normal CPT0246980002 a1556574-d2cb-40aa-b24a-c803a70fe646_wgs_gdc_realn.bam 89796777436 BAM harmonized CPTAC3 5f880ac9-ef30-4d22-9fd9-b50b64fa9782 c96cc3c99936911b725656b324889efa {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03780.WGS.T C3N-03780 PDA WGS tumor CPT0246940006 CPT0246940006.WholeGenome.RP-1303.bam 124703292195 BAM submitted_aligned CPTAC3 dbaa8650-d6ff-4471-89bd-6f8dfde5e4af b3859d821d6a1684cf0ae9eefe73161b {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.WGS.T.hg38 C3N-03780 PDA WGS tumor CPT0246940006 43f0a061-d864-4aa8-b2c3-00780f10c69c_wgs_gdc_realn.bam 179158625769 BAM harmonized CPTAC3 71a84ddb-aedf-49de-854f-cdce8601046f 88bbcccac732ad2e2ab365a2f1ce0b2f {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.WXS.A C3N-03780 PDA WXS tissue_normal CPT0246950006 CPT0246950006.WholeExome.RP-1303.bam 25293558438 BAM submitted_aligned CPTAC3 eeabf981-c4d9-4959-bfba-1b10cb38db3b d74c67d317eb760e73ecd0408ec815eb {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.WXS.A.hg38 C3N-03780 PDA WXS tissue_normal CPT0246950006 1da1d839-0fcb-4551-8569-faa3e4e42844_wxs_gdc_realn.bam 34382710011 BAM harmonized CPTAC3 229a50da-62a2-4d74-80de-7f5de49e7c73 3d2cacd58f2e87dec373bcad0abf15eb {"aliquot_tag": "ALQ_d7273706", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03780.WXS.N C3N-03780 PDA WXS blood_normal CPT0246980002 CPT0246980002.WholeExome.RP-1303.bam 24588978183 BAM submitted_aligned CPTAC3 05b11a06-d7c5-4903-b7f4-b9f5e5303303 82d845c151aa1b21523926e4d2b4d496 {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03780.WXS.N.hg38 C3N-03780 PDA WXS blood_normal CPT0246980002 a1556574-d2cb-40aa-b24a-c803a70fe646_wxs_gdc_realn.bam 34042244073 BAM harmonized CPTAC3 ccde5b40-05a2-43a4-80cc-cc7bc89ca06f 23e7ea9ac7c15389889259543dd7b6a7 {"aliquot_tag": "ALQ_28da37ae", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03780.WXS.T C3N-03780 PDA WXS tumor CPT0246940006 CPT0246940006.WholeExome.RP-1303.bam 71829139627 BAM submitted_aligned CPTAC3 7467299a-f169-4b1f-88e2-ac07b091d245 e4c337c3dc5c122f232e3d6f823465f4 {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03780.WXS.T.hg38 C3N-03780 PDA WXS tumor CPT0246940006 43f0a061-d864-4aa8-b2c3-00780f10c69c_wxs_gdc_realn.bam 99047621265 BAM harmonized CPTAC3 f1b58ef0-d8d6-4b0c-a4f9-59fb954bc465 05be35cba6b98f21eceafa2d4c1eed31 {"aliquot_tag": "ALQ_ea471eb6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.MethArray.Green.T C3N-03781 HNSCC Methylation_Array tumor CPT0245550006 203271740156_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 3dc8a315-545a-4dca-9167-bc876b2e3de4 1353e23728889353d51145d665c1ae00 {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.MethArray.Red.T C3N-03781 HNSCC Methylation_Array tumor CPT0245550006 203271740156_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 a7144e4e-4a2c-4783-9649-d12631f920d1 50a4e52df9bfdc2f9cfa28dadf3fd3fb {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.miRNA-Seq.S26_L006_R1.T C3N-03781 HNSCC miRNA-Seq tumor CPT0245550009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L006_R1_001.unaln.bam 220688043 BAM S26_L006_R1 submitted_unaligned CPTAC3 9c371ebe-d16f-4639-a186-7a9d3fe28aac 7c12d0eda38cdefd9c73887c00b2de1e {"aliquot_tag": "ALQ_1b2f071", "sample": "S26", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.miRNA-Seq.T.hg38 C3N-03781 HNSCC miRNA-Seq tumor CPT0245550009 13d66803-a089-402e-9fd0-ba56b9c65db4_mirnaseq_gdc_realn.bam 247705905 BAM harmonized CPTAC3 d281c923-3a88-4f06-a5f3-25f318a9218b 700ecd08416fec06a843bd769ad8a1bf {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.RNA-Seq.chimeric.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.chimeric.gdc_realn.bam 43487493 BAM chimeric harmonized CPTAC3 8e783832-b27b-48f2-9df5-d5d844eb8a4a 1a98b4e38018eef90598c7689e51d203 {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.RNA-Seq.genomic.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.genomic.gdc_realn.bam 8136915180 BAM genomic harmonized CPTAC3 909ec9db-4cec-441d-a62a-0c56d5d2ee67 12233dbc56325b7191cc0a045cb8c1a5 {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.RNA-Seq.S2_L001_R1.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R1_001.fastq.gz 3731117687 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 7f75da62-f780-4bc8-96e8-0e6a45a99642 86a27f50a94ad7b58771f3576c0e4d4c {"aliquot_tag": "ALQ_1b2f071", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.RNA-Seq.S2_L001_R2.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R2_001.fastq.gz 4368607346 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 63228bd7-68ca-4c11-98fb-32628703e58d 6a844311f548fad96699bfd181351bd6 {"aliquot_tag": "ALQ_1b2f071", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.RNA-Seq.transcriptome.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.transcriptome.gdc_realn.bam 11387626215 BAM transcriptome harmonized CPTAC3 355d12e8-6c53-4b9a-b0e8-031c1c6b7a32 3090c5a39b7ef8778683d8f8e1b9ed37 {"aliquot_tag": "ALQ_1b2f071", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.WGS.N C3N-03781 HNSCC WGS blood_normal CPT0245590002 CPT0245590002.WholeGenome.RP-1303.bam 76246355753 BAM submitted_aligned CPTAC3 2cb7e358-1a35-47a8-8512-e556c216cae0 48e0575083aee515c8330048a63acd05 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03781.WGS.N.hg38 C3N-03781 HNSCC WGS blood_normal CPT0245590002 9ca2769b-5034-4bc2-a214-fb6bf2e96184_wgs_gdc_realn.bam 110363614978 BAM harmonized CPTAC3 dbaf6575-d447-4364-b983-a0529932bf63 4d53fb01f3e99496c957ffa6c8a71d08 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03781.WGS.T C3N-03781 HNSCC WGS tumor CPT0245550006 CPT0245550006.WholeGenome.RP-1303.bam 79755893779 BAM submitted_aligned CPTAC3 4bf22dfa-f5a5-4285-bb38-8cd25e465028 359ae328d88393fbafd22d681b21e67f {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.WGS.T.hg38 C3N-03781 HNSCC WGS tumor CPT0245550006 4fcb737a-a3a1-47b5-b8c7-9363fd57fd4d_wgs_gdc_realn.bam 115231432462 BAM harmonized CPTAC3 26a576e6-d51e-4574-a6b1-db8a047d55f2 5284dc2d7f4b5263bfb1a8919ee2c9d7 {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.WXS.N C3N-03781 HNSCC WXS blood_normal CPT0245590002 CPT0245590002.WholeExome.RP-1303.bam 31195727179 BAM submitted_aligned CPTAC3 8a520e61-2005-4439-af20-510fc1952993 8391a7bde78b19eac5e7a68095932dc4 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03781.WXS.N.hg38 C3N-03781 HNSCC WXS blood_normal CPT0245590002 9ca2769b-5034-4bc2-a214-fb6bf2e96184_wxs_gdc_realn.bam 42418172597 BAM harmonized CPTAC3 aeb702f9-6c45-440f-820b-b8f1d71320c5 1db9f4fa80c86d058b3ac98b3ec97550 {"aliquot_tag": "ALQ_5390c4f8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03781.WXS.T C3N-03781 HNSCC WXS tumor CPT0245550006 CPT0245550006.WholeExome.RP-1303.bam 27306768123 BAM submitted_aligned CPTAC3 8416e437-3af4-42c0-be29-03c56bc77a54 6435a6716462355eb77146601a3659be {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03781.WXS.T.hg38 C3N-03781 HNSCC WXS tumor CPT0245550006 4fcb737a-a3a1-47b5-b8c7-9363fd57fd4d_wxs_gdc_realn.bam 37934139340 BAM harmonized CPTAC3 a71b51a8-06f9-45a8-a7cb-3cbedbf72b66 11301db34a0b8cf251c23785dfb87340 {"aliquot_tag": "ALQ_910dede0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.MethArray.Green.T C3N-03782 HNSCC Methylation_Array tumor CPT0245630006 203219650096_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0465608e-f524-4604-87c6-92c08239bf8a a4c84ead883bceddb3519a5519c8ab57 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.MethArray.Red.T C3N-03782 HNSCC Methylation_Array tumor CPT0245630006 203219650096_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 21850936-3a1f-4428-8203-c1aa43c827bc 3d28642f5ca85b8a088361994570db70 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.miRNA-Seq.S28_L006_R1.T C3N-03782 HNSCC miRNA-Seq tumor CPT0245630009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L006_R1_001.unaln.bam 159496986 BAM S28_L006_R1 submitted_unaligned CPTAC3 46abb0cb-1719-44ab-ac24-d9bf8d77b64e 19e2d4171a0ad10d28a5366d8ba9eda0 {"aliquot_tag": "ALQ_866777f", "sample": "S28", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.miRNA-Seq.T.hg38 C3N-03782 HNSCC miRNA-Seq tumor CPT0245630009 10348a52-e334-45e7-ab0d-7a6bb5757cdf_mirnaseq_gdc_realn.bam 179911915 BAM harmonized CPTAC3 1acde2ec-93de-42ce-8883-c2a505f3eba5 4519741ef414e346f00967566914f392 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.chimeric.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.chimeric.gdc_realn.bam 38009683 BAM chimeric harmonized CPTAC3 b7cf3608-43ed-4715-8ca1-0c7e7125aa7c 03531cccdd80dcf4f14057863610f8f9 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.chimeric.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.chimeric.gdc_realn.bam 45096173 BAM chimeric harmonized CPTAC3 2881f2c3-ba3f-463c-86e2-c220adce2aa3 aca97be18bb0630916cc9ee5b16fd071 {"aliquot_tag": "ALQ_77352640", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.genomic.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.genomic.gdc_realn.bam 8571982926 BAM genomic harmonized CPTAC3 d8e95530-9c58-4e4d-8294-d299b8805da9 8897e2d12b0b13379d018a1c33e139d9 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.genomic.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.genomic.gdc_realn.bam 11103380969 BAM genomic harmonized CPTAC3 7714a7f6-98cf-491c-8818-e251c56c5634 5c29917239f2599320be6aa5f48fb166 {"aliquot_tag": "ALQ_77352640", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.S24_R1.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R1_001.fastq.gz 5732325261 FASTQ S24_R1 submitted_unaligned CPTAC3 516f4b11-c4ab-404c-a73e-0a90acad0003 0e25f9f014c2b94f246ba37d53db7691 {"aliquot_tag": "ALQ_77352640", "sample": "S24", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.S24_R2.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R2_001.fastq.gz 5990609361 FASTQ S24_R2 submitted_unaligned CPTAC3 5bfd3bf9-5ca2-4442-889c-b154faca3dff c25de015c66678ecc511557903857940 {"aliquot_tag": "ALQ_77352640", "sample": "S24", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.S4_L001_R1.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4055189847 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 01883ecf-95e9-432e-bddf-fd32b9b11267 704bc646a6d27cd6925d7ba33e7cabeb {"aliquot_tag": "ALQ_866777f", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.S4_L001_R2.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4711666865 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 3b56629d-27c6-4e77-a1a8-02033a0346e0 18eef57a301dc072c237ebd6a6c5203e {"aliquot_tag": "ALQ_866777f", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.transcriptome.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.transcriptome.gdc_realn.bam 12706262172 BAM transcriptome harmonized CPTAC3 921ed707-6ea4-4dbf-9222-ff698660510c 0710dcd2a27612e537e0d00e0729f009 {"aliquot_tag": "ALQ_866777f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.RNA-Seq.transcriptome.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.transcriptome.gdc_realn.bam 10548371176 BAM transcriptome harmonized CPTAC3 eb41f00f-93e5-4268-9a38-1cb2275b72b5 260a005291ab1006bbfdf9d1e3f7eb7b {"aliquot_tag": "ALQ_77352640", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.WGS.N C3N-03782 HNSCC WGS blood_normal CPT0245670002 CPT0245670002.WholeGenome.RP-1303.bam 69160197471 BAM submitted_aligned CPTAC3 862f1d23-93eb-43fd-b83f-d1eeba14213e a3ae13faa858c825980780397a9107d8 {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03782.WGS.N.hg38 C3N-03782 HNSCC WGS blood_normal CPT0245670002 050dfd8d-facd-4fc7-ac6a-0d19885cd64d_wgs_gdc_realn.bam 99971026031 BAM harmonized CPTAC3 802567d7-1975-49fc-bb47-5d403f1df38e 6b315e5b98a0c962e1c3e419ed016f5b {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03782.WGS.T C3N-03782 HNSCC WGS tumor CPT0245630006 CPT0245630006.WholeGenome.RP-1303.bam 66558324478 BAM submitted_aligned CPTAC3 daba88af-2e4c-43ff-a405-2b39381da0c0 eda61152f71122663cd1250b7b838159 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.WGS.T.hg38 C3N-03782 HNSCC WGS tumor CPT0245630006 7d0b4208-55d0-42a3-95f8-9dde72c4009c_wgs_gdc_realn.bam 95804227778 BAM harmonized CPTAC3 dbfb80d5-0339-4bde-bf36-0237fee2b512 d87ed9025fd59f1b1668d3687a6c9c01 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.WXS.N C3N-03782 HNSCC WXS blood_normal CPT0245670002 CPT0245670002.WholeExome.RP-1303.bam 42584112183 BAM submitted_aligned CPTAC3 fa5512bf-4139-4d7b-bdf8-3a05b021dd36 4ad9e3f8ce6b46e29fc83d4def00ab1c {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03782.WXS.N.hg38 C3N-03782 HNSCC WXS blood_normal CPT0245670002 050dfd8d-facd-4fc7-ac6a-0d19885cd64d_wxs_gdc_realn.bam 58210766999 BAM harmonized CPTAC3 dbce9fa3-81eb-4d6e-999c-84e5bb637e0d 33e20125f72953a0707e404dc6b49cd2 {"aliquot_tag": "ALQ_6a340837", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03782.WXS.T C3N-03782 HNSCC WXS tumor CPT0245630006 CPT0245630006.WholeExome.RP-1303.bam 21125287913 BAM submitted_aligned CPTAC3 e3df18f0-bc04-4509-a2ed-e5df7c8c6356 549f8cea70b1bd528ed8c91a24af3849 {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03782.WXS.T.hg38 C3N-03782 HNSCC WXS tumor CPT0245630006 7d0b4208-55d0-42a3-95f8-9dde72c4009c_wxs_gdc_realn.bam 29256475230 BAM harmonized CPTAC3 e3536408-c09f-43f2-a06e-3aa9a582a3de 27153091591de77872f61c8497ed6b6f {"aliquot_tag": "ALQ_98d96aee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.MethArray.Green.T C3N-03783 HNSCC Methylation_Array tumor CPT0245730006 203220070154_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2accce3c-c65a-4b84-a631-93171521e5bc 2324841b5a429306b37fb95e60172177 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.MethArray.Red.T C3N-03783 HNSCC Methylation_Array tumor CPT0245730006 203220070154_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 30e73882-97f8-47a5-a068-06dd9128c3ee 98a7418b7e341af444fd17e2b5cf9add {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.miRNA-Seq.S30_L006_R1.T C3N-03783 HNSCC miRNA-Seq tumor CPT0245730009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L006_R1_001.unaln.bam 186281546 BAM S30_L006_R1 submitted_unaligned CPTAC3 45f7e3a2-5184-44d2-8eae-8a393dc7b33a a539c7d5b9e67d70b9b09d6a164965ac {"aliquot_tag": "ALQ_c33aa4da", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.miRNA-Seq.T.hg38 C3N-03783 HNSCC miRNA-Seq tumor CPT0245730009 df1b38fb-069d-44f9-a6fa-a8d460ec33ec_mirnaseq_gdc_realn.bam 208183504 BAM harmonized CPTAC3 62c86bea-8355-4cb5-989a-d22062aba85c 143849a1e2b181dc320df1428ba4baf6 {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.chimeric.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.chimeric.gdc_realn.bam 47955896 BAM chimeric harmonized CPTAC3 e23685df-44bc-448d-a320-8d50e7485316 8e4c902025d6f255d61e45654ffb46ea {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.chimeric.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.chimeric.gdc_realn.bam 195123286 BAM chimeric harmonized CPTAC3 9a3084e0-0dfd-481b-9089-3e75826618d6 83b4646cd32d35aac406799015fa23be {"aliquot_tag": "ALQ_df57520", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.genomic.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.genomic.gdc_realn.bam 9195298582 BAM genomic harmonized CPTAC3 af9f5b14-6fc8-4dac-8ef4-8d54093219ca 599db3c7a7759b08f599fd73d9e6bc1e {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.genomic.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.genomic.gdc_realn.bam 10773898624 BAM genomic harmonized CPTAC3 b97939b7-9851-4e30-b588-55e7545cbe80 67a25f3238100a26a80556f70fa926c1 {"aliquot_tag": "ALQ_df57520", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.S1_L001_R1.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R1_001.fastq.gz 4390779195 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 8d84740f-c498-4448-9c93-026f120190ba b5db0acb6b348e48935d4f1a5d37b52c {"aliquot_tag": "ALQ_c33aa4da", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.S1_L001_R2.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R2_001.fastq.gz 4889416199 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 aaea44c9-7660-4445-8160-d22b946eca15 1e118aeb2355eab7140173e0cd5ddb0f {"aliquot_tag": "ALQ_c33aa4da", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.S53_R1.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R1_001.fastq.gz 8797443848 FASTQ S53_R1 submitted_unaligned CPTAC3 c2c7a172-05a7-4be2-9d17-dfae7010d969 2e4e5c50559e3ba42cc82941ae5e7650 {"aliquot_tag": "ALQ_df57520", "sample": "S53", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.S53_R2.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R2_001.fastq.gz 9073985197 FASTQ S53_R2 submitted_unaligned CPTAC3 3abec326-06bf-40a9-a627-2f1051098ddb 861e28e3433417bb68a3e2860a2770fd {"aliquot_tag": "ALQ_df57520", "sample": "S53", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.transcriptome.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.transcriptome.gdc_realn.bam 13310816514 BAM transcriptome harmonized CPTAC3 f645f0c8-6286-4f9c-9f08-aef9b1139dde 1bc984474867e1ee5954ae1478c95303 {"aliquot_tag": "ALQ_c33aa4da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.RNA-Seq.transcriptome.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.transcriptome.gdc_realn.bam 6900169699 BAM transcriptome harmonized CPTAC3 ba65f528-491d-4da5-9732-b3d2b284a1fb 74b44d5280656fbaa0d24e6a42182857 {"aliquot_tag": "ALQ_df57520", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.WGS.N C3N-03783 HNSCC WGS blood_normal CPT0245770002 CPT0245770002.WholeGenome.RP-1303.bam 66951127096 BAM submitted_aligned CPTAC3 e0345b04-c29f-4b66-92d4-eff47dfc985c 71cfd0af396fe18e53dff937245643d2 {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03783.WGS.N.hg38 C3N-03783 HNSCC WGS blood_normal CPT0245770002 64224eeb-53e4-45e7-9cd8-4c0f7d2af027_wgs_gdc_realn.bam 95893849570 BAM harmonized CPTAC3 50c68c62-9e46-4bc9-92f5-0ca527c593db 59dd6cfb67488ec7e86bc95def6fa4a7 {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03783.WGS.T C3N-03783 HNSCC WGS tumor CPT0245730006 CPT0245730006.WholeGenome.RP-1303.bam 67021780356 BAM submitted_aligned CPTAC3 521945c7-9ac8-4f6e-8d7b-3426ae408bf6 f273e26d220905ba72af4549da839883 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.WGS.T.hg38 C3N-03783 HNSCC WGS tumor CPT0245730006 93f9f952-a59a-4f53-bc01-fe70f801d0b2_wgs_gdc_realn.bam 96705559784 BAM harmonized CPTAC3 15227955-cb8b-48d0-8035-804fec2bf547 35f5ceef34eae42a4480feecf711a503 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.WXS.N C3N-03783 HNSCC WXS blood_normal CPT0245770002 CPT0245770002.WholeExome.RP-1303.bam 28795346184 BAM submitted_aligned CPTAC3 bf64d2f0-ee38-47d8-9953-0da4074bff60 7e6f694aa4c2db5f38a24e69f66f17b8 {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03783.WXS.N.hg38 C3N-03783 HNSCC WXS blood_normal CPT0245770002 64224eeb-53e4-45e7-9cd8-4c0f7d2af027_wxs_gdc_realn.bam 38811916166 BAM harmonized CPTAC3 7592f753-b411-41c6-8abc-1964e70eb1d4 6d8869e2b85a98f37f87410acd88164d {"aliquot_tag": "ALQ_a168db92", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03783.WXS.T C3N-03783 HNSCC WXS tumor CPT0245730006 CPT0245730006.WholeExome.RP-1303.bam 25016978883 BAM submitted_aligned CPTAC3 166fdf7b-9251-4460-96d7-1b25bbd9ff0c 69df80eccf57dbe5535751a5d9b8bd60 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03783.WXS.T.hg38 C3N-03783 HNSCC WXS tumor CPT0245730006 93f9f952-a59a-4f53-bc01-fe70f801d0b2_wxs_gdc_realn.bam 34497705197 BAM harmonized CPTAC3 1f70bce7-29ee-45b7-8424-0eeb5f219bd8 074785ce97423d3e6e9b42829da84945 {"aliquot_tag": "ALQ_5385b94b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.MethArray.Green.T C3N-03785 HNSCC Methylation_Array tumor CPT0245680006 203219640047_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 3af1c39b-e741-4418-b2ed-400a890b098c d4c7dfa7ea798363a392223e4bb782d5 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.MethArray.Red.T C3N-03785 HNSCC Methylation_Array tumor CPT0245680006 203219640047_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 53611f5b-35d6-4862-afc5-8c0098411093 6b17fabf3a6327e18c353688a0ea9ad2 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.miRNA-Seq.S29_L006_R1.T C3N-03785 HNSCC miRNA-Seq tumor CPT0245680009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L006_R1_001.unaln.bam 202538382 BAM S29_L006_R1 submitted_unaligned CPTAC3 60fb927a-def1-4d00-bb59-1cc2d4a2576b 17c3e852656c945e88e28ee5d819e0a1 {"aliquot_tag": "ALQ_7fb6466e", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.miRNA-Seq.T.hg38 C3N-03785 HNSCC miRNA-Seq tumor CPT0245680009 6932485f-b504-4ea3-8b35-5c5ab8ac3d9d_mirnaseq_gdc_realn.bam 227908611 BAM harmonized CPTAC3 5d182dfa-fe9b-4a2a-8d8f-fa184e3c69fe 249ca38f314839a112991f69384e02e0 {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.chimeric.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.chimeric.gdc_realn.bam 43435694 BAM chimeric harmonized CPTAC3 2214c24e-3842-4e28-8307-f2f804f0907c 043dbedcd38fefc6ad78935b3b7d6706 {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.chimeric.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.chimeric.gdc_realn.bam 210104300 BAM chimeric harmonized CPTAC3 9969fd85-0778-4fc6-bc7b-98e1e6cdd55f 30b143496855868f87832c4cfd528870 {"aliquot_tag": "ALQ_82b58080", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.genomic.gdc_realn.bam 8621214730 BAM genomic harmonized CPTAC3 32312923-c2cb-4d7e-be0a-b935f2a78103 e10c34c319d7241d0d96789abb25a58e {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.genomic.gdc_realn.bam 11684072769 BAM genomic harmonized CPTAC3 1c122ebe-f0fd-4d64-9033-fd096c18acbd cf5600f8319a9cf77866386b7208e65f {"aliquot_tag": "ALQ_82b58080", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.S2_L001_R1.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R1_001.fastq.gz 4188448557 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 20175374-0734-4641-854c-024ae0497cac 98f24e34c16d49f9607d1288e7900e6b {"aliquot_tag": "ALQ_7fb6466e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.S2_L001_R2.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R2_001.fastq.gz 4640347212 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 d7bc6f70-e6b1-4dec-980e-8aac75250ae6 4354258b969adc0e458da9733f95e2bb {"aliquot_tag": "ALQ_7fb6466e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.S57_R1.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R1_001.fastq.gz 7681162215 FASTQ S57_R1 submitted_unaligned CPTAC3 f0ff1012-7fea-4576-a2bf-f23a8c483ad5 d5d9a9a24948bafa3e2fda50bd129566 {"aliquot_tag": "ALQ_82b58080", "sample": "S57", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.S57_R2.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R2_001.fastq.gz 7946218093 FASTQ S57_R2 submitted_unaligned CPTAC3 e2809076-3d8e-4a38-b328-4cd384377e7a c4a761e360467c46fe15793cc7fd25d8 {"aliquot_tag": "ALQ_82b58080", "sample": "S57", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.transcriptome.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.transcriptome.gdc_realn.bam 11018516213 BAM transcriptome harmonized CPTAC3 ed3dcb38-f829-4685-ab1a-7aca7520b216 ddc785ff3c446c88d12940b744e59f25 {"aliquot_tag": "ALQ_7fb6466e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.RNA-Seq.transcriptome.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.transcriptome.gdc_realn.bam 6225811419 BAM transcriptome harmonized CPTAC3 54b8edf9-46f1-4c95-a48b-07e8cbff7337 bb5291d79c89db33f06f4970b42d5bcf {"aliquot_tag": "ALQ_82b58080", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.WGS.N C3N-03785 HNSCC WGS blood_normal CPT0245720002 CPT0245720002.WholeGenome.RP-1303.bam 98079670435 BAM submitted_aligned CPTAC3 1cac1b43-3190-4658-9f5d-7cc642a5da3b 6af63babae6446bf28c6179fae2f2ddb {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03785.WGS.N.hg38 C3N-03785 HNSCC WGS blood_normal CPT0245720002 89026d9b-b739-4d8f-8bf1-81541034c417_wgs_gdc_realn.bam 142615149954 BAM harmonized CPTAC3 4db256f6-bad6-403d-905b-716335777259 baaeb998b886b09dd4b40c48804b0b05 {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03785.WGS.T C3N-03785 HNSCC WGS tumor CPT0245680006 CPT0245680006.WholeGenome.RP-1303.bam 69022650723 BAM submitted_aligned CPTAC3 cabe110a-4e85-436c-a9c9-57413d61a345 73dede16fd29582e7cd344b7ccee229a {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.WGS.T.hg38 C3N-03785 HNSCC WGS tumor CPT0245680006 58d9cb22-cc39-4db7-b889-647d69bed821_wgs_gdc_realn.bam 99934721800 BAM harmonized CPTAC3 f85322af-188a-4e34-ba6c-b28a0344f50a 7e9e4aa760c93d1ba128c6311e29fa00 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.WXS.N C3N-03785 HNSCC WXS blood_normal CPT0245720002 CPT0245720002.WholeExome.RP-1303.bam 25053016566 BAM submitted_aligned CPTAC3 862729c6-6a6d-4e0b-abd7-aa56bf81c3f0 448293508b80bfbcc4658d580d73e1fb {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03785.WXS.N.hg38 C3N-03785 HNSCC WXS blood_normal CPT0245720002 89026d9b-b739-4d8f-8bf1-81541034c417_wxs_gdc_realn.bam 34737306129 BAM harmonized CPTAC3 215dc24d-7f8b-4bb7-b7c2-4c25980ff0c0 9f66127233d88ca8ac2071c42f3a4501 {"aliquot_tag": "ALQ_698854e2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03785.WXS.T C3N-03785 HNSCC WXS tumor CPT0245680006 CPT0245680006.WholeExome.RP-1303.bam 23064821578 BAM submitted_aligned CPTAC3 9e7b5bab-8679-4354-9489-149e07df005d 04f7d520ced79614a1817896884a9b46 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03785.WXS.T.hg38 C3N-03785 HNSCC WXS tumor CPT0245680006 58d9cb22-cc39-4db7-b889-647d69bed821_wxs_gdc_realn.bam 31718463963 BAM harmonized CPTAC3 c93c4841-5d45-4476-b6a2-935ba9c20f82 34917359501902f86f17dc1cea7d97e5 {"aliquot_tag": "ALQ_ef095bff", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03788.MethArray.Green.T C3N-03788 GBM Methylation_Array tumor CPT0457770011 206250290128_R07C01_Grn.idat 13677950 IDAT Green NA CPTAC3 cc55834b-f2a3-4144-b0af-39170068fc1d 4b145b2cdf0df816b97155059d34b878 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03788.MethArray.Red.T C3N-03788 GBM Methylation_Array tumor CPT0457770011 206250290128_R07C01_Red.idat 13677950 IDAT Red NA CPTAC3 c88b0907-bfc3-42fb-81d1-b8f069fc9c85 7ac51ce78eaa54f0509518b40ca3d1c3 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03788.miRNA-Seq.S8_L003_R1.T C3N-03788 GBM miRNA-Seq tumor CPT0457770008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTCAGA_S8_L003_R1_001.unaln.bam 381775024 BAM S8_L003_R1 submitted_unaligned CPTAC3 df8726e2-4517-4a7a-bdaf-9289ab6ad3f5 3ecb5f14597b720c4de18afc61cf8f8a {"aliquot_tag": "ALQ_69925ab1", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03788.miRNA-Seq.T.hg38 C3N-03788 GBM miRNA-Seq tumor CPT0457770008 d8197cf6-869b-455b-b0ac-00d34a7e3eb6_mirnaseq_gdc_realn.bam 443353789 BAM harmonized CPTAC3 d4df0370-29b4-4b40-b64d-c07638d547b4 5ee687f137f09c2ce42fda76d035aa94 {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-03788.RNA-Seq.chimeric.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.chimeric.gdc_realn.bam 796437541 BAM chimeric harmonized CPTAC3 ee80ea15-041b-44ee-9240-9bd2207ea2dd 2aa671cfb9e467689e93ec49093de3cb {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-03788.RNA-Seq.genomic.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.genomic.gdc_realn.bam 7373308494 BAM genomic harmonized CPTAC3 cfed8718-d98a-4b7a-bba2-7ca5fbbcfe9f c5988349f1b1ac85d9bcf8712fb07c34 {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-03788.RNA-Seq.S1_L006_R1.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R1_001.fastq.gz 3600988531 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 384ad3cb-eafa-44e5-b6bd-6668d2cbf435 d4637272b0fb6f91adfeb3cb94b7525e {"aliquot_tag": "ALQ_69925ab1", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03788.RNA-Seq.S1_L006_R2.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R2_001.fastq.gz 3808720166 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 8ea7fb5a-7ab8-4ce4-bf91-abeb62546d76 29397817e7be40c6146805e5c326309c {"aliquot_tag": "ALQ_69925ab1", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03788.RNA-Seq.transcriptome.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.transcriptome.gdc_realn.bam 7571693638 BAM transcriptome harmonized CPTAC3 48973af3-bff5-47d4-932a-af8466b1a338 f6e0095a589476561d2c936afecbc28e {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-03788.WGS.N C3N-03788 GBM WGS blood_normal CPT0457870001 CPT0457870001.WholeGenome.RP-2158.bam 62556087199 BAM submitted_aligned CPTAC3 29306a95-3819-46f2-8462-a99e2addd672 5c283d67b8d7157c2d0e37de16aca6c1 {"aliquot_tag": "ALQ_e11850c0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03788.WGS.T C3N-03788 GBM WGS tumor CPT0457770011 CPT0457770011.WholeGenome.RP-2158.bam 120084054423 BAM submitted_aligned CPTAC3 112eecb3-e804-41e8-be96-3ad019bc58ec 64ff6971acadb7ec90b0b85f26b13ea4 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.MethArray.Green.T C3N-03789 GBM Methylation_Array tumor CPT0244860006 204372030022_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 36949622-9245-4639-adbb-5d3825974411 b2699c6a827038d7e364e088d58b08b0 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.MethArray.Red.T C3N-03789 GBM Methylation_Array tumor CPT0244860006 204372030022_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 801da269-0c53-48e6-9335-e70300569747 4458434e8c9e1e9ee42b9674d717f239 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.miRNA-Seq.S27_L002_R1.T C3N-03789 GBM miRNA-Seq tumor CPT0244860009 200403_UNC31-K00269_0274_AHCF7GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 225451718 BAM S27_L002_R1 submitted_unaligned CPTAC3 b660df27-cdb3-4bb7-960c-cd23e8296233 ff52890e8305588e649255f692288db9 {"aliquot_tag": "ALQ_5cfb92cb", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.miRNA-Seq.T.hg38 C3N-03789 GBM miRNA-Seq tumor CPT0244860009 534a589d-dc25-4c71-85fc-d65334cd27ea_mirnaseq_gdc_realn.bam 249583825 BAM harmonized CPTAC3 11545c89-0bfc-4d34-adcb-c5ad211f73f2 27ddc12b2ad3a7604b1eae155f39dfa1 {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.RNA-Seq.chimeric.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.chimeric.gdc_realn.bam 257911886 BAM chimeric harmonized CPTAC3 c08fb656-b40e-4d2f-b57f-1158801b27cf fb82e204766eb2970edbe0aac7e5506a {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.RNA-Seq.genomic.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.genomic.gdc_realn.bam 9898430734 BAM genomic harmonized CPTAC3 3a8ad91f-6b6d-41a8-9eba-6b92e87e5efd 24d28fea3b68fe075268e05dcaea8fc9 {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.RNA-Seq.S58_L006_R1.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R1_001.fastq.gz 4214876403 FASTQ S58_L006_R1 submitted_unaligned CPTAC3 de40a9c3-603d-44e2-a76e-9b4a98d3f482 885cf101d94c47ab398d0a77b062ba57 {"aliquot_tag": "ALQ_5cfb92cb", "sample": "S58", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.RNA-Seq.S58_L006_R2.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ S58_L006_R2 submitted_unaligned CPTAC3 0f25e421-ff9d-41ab-bef9-2503901bdb40 8492a7c7df0b07c7410a3373f05e1322 {"aliquot_tag": "ALQ_5cfb92cb", "sample": "S58", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.RNA-Seq.transcriptome.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.transcriptome.gdc_realn.bam 10918795234 BAM transcriptome harmonized CPTAC3 cedb4de6-ea54-4ec8-8aad-16aa836a10cb 6f601acf8394bf923f17dd4226cad072 {"aliquot_tag": "ALQ_5cfb92cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.WGS.N C3N-03789 GBM WGS blood_normal CPT0244880002 CPT0244880002.WholeGenome.RP-2158.bam 32902918385 BAM submitted_aligned CPTAC3 f5c73bfd-9555-4862-bdc0-e05493aa48fb 8be505ed8103b58a1d3b473b30a60c50 {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03789.WGS.N.hg38 C3N-03789 GBM WGS blood_normal CPT0244880002 d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wgs_gdc_realn.bam 100034438784 BAM harmonized CPTAC3 c300354a-780b-4904-91d1-54e08b324a01 ac8e480fdfec3292c6bd2d26777f821b {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03789.WGS.T C3N-03789 GBM WGS tumor CPT0244860006 CPT0244860006.WholeGenome.RP-2158.bam 21896768790 BAM submitted_aligned CPTAC3 8ecd6587-05f6-42d4-b7a5-bd592a8ecef5 702a7d0055057a49f9dd5e7008888e66 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.WGS.T.hg38 C3N-03789 GBM WGS tumor CPT0244860006 81c4a568-2fb2-44a1-b5cd-0654380d459a_wgs_gdc_realn.bam 62404522107 BAM harmonized CPTAC3 5e036af9-a3a3-48ed-ab3e-5d5406e9b91f b543525ac07e2a30d52b39ca79c4a6a7 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.WXS.N C3N-03789 GBM WXS blood_normal CPT0244880002 CPT0244880002.WholeExome.RP-1303.bam 24719484242 BAM submitted_aligned CPTAC3 f1de1731-390b-499e-8c2b-25add41d85e8 1acdcffffdf3d3d7ab5086fae3a6e337 {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03789.WXS.N.hg38 C3N-03789 GBM WXS blood_normal CPT0244880002 d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wxs_gdc_realn.bam 34710561156 BAM harmonized CPTAC3 502434e4-f053-44d4-b480-d40873a0c659 bf06f88cc9dfb2b7c91f5d350a819985 {"aliquot_tag": "ALQ_7419f522", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03789.WXS.T C3N-03789 GBM WXS tumor CPT0244860006 CPT0244860006.WholeExome.RP-1303.bam 18044673025 BAM submitted_aligned CPTAC3 e5dbc9e9-c152-4944-83a8-74e70f97e3d6 804ca1e0e52fc5eb43db3db490d697d0 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03789.WXS.T.hg38 C3N-03789 GBM WXS tumor CPT0244860006 81c4a568-2fb2-44a1-b5cd-0654380d459a_wxs_gdc_realn.bam 25433729718 BAM harmonized CPTAC3 cfa3caaf-f484-40f9-bd13-3708af6901c4 d444627e4e15e46b087a9a535dabe7e8 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.MethArray.Green.T C3N-03791 GBM Methylation_Array tumor CPT0248160007 204367490061_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 4ee7dfa7-abdb-49a9-b60d-7a485079aa3e 819654387b42730425a76e97906cfa7b {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.MethArray.Red.T C3N-03791 GBM Methylation_Array tumor CPT0248160007 204367490061_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa4361ca-a50e-4b54-9184-70aeb4ff399e cac71cd107673a14bc856f8017dab04f {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.miRNA-Seq.S34_L002_R1.T C3N-03791 GBM miRNA-Seq tumor CPT0248160010 200403_UNC31-K00269_0274_AHCF7GBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 211919722 BAM S34_L002_R1 submitted_unaligned CPTAC3 c7ef9ccf-ea0f-4031-a4ba-e3ba563aa40d ef97f7ca01896cc149c083d9fbbea688 {"aliquot_tag": "ALQ_dc932092", "sample": "S34", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.miRNA-Seq.T.hg38 C3N-03791 GBM miRNA-Seq tumor CPT0248160010 0b734a68-df90-40a5-8f66-54703e80d84c_mirnaseq_gdc_realn.bam 234465379 BAM harmonized CPTAC3 fd2bd498-1128-45d6-9d50-b1cd46a7690f 5d659a786d1fb7aa021c9a6abeda814f {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.RNA-Seq.chimeric.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.chimeric.gdc_realn.bam 166237444 BAM chimeric harmonized CPTAC3 5b9a2d99-63a3-43e5-bd3d-beabddc82f34 f83693eaec3a3d5d5ec8f1c1da59eacf {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.RNA-Seq.genomic.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.genomic.gdc_realn.bam 8037991660 BAM genomic harmonized CPTAC3 fab3845a-5041-4bf2-aff3-3173f8e8d1c5 bfe716e7b502eb0abf5c1b19fd07d838 {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.RNA-Seq.S2_L001_R1.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 278403a7-7c34-4b9e-97d5-98df7b34b730 7a8bbaed21fdf9861045ff00de5b66c9 {"aliquot_tag": "ALQ_dc932092", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.RNA-Seq.S2_L001_R2.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 e0f0a291-d112-4eac-affa-355d24b03424 cf3d615df0f2b5f6c1e6b9cde957dbd7 {"aliquot_tag": "ALQ_dc932092", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.RNA-Seq.transcriptome.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.transcriptome.gdc_realn.bam 7697110943 BAM transcriptome harmonized CPTAC3 fc747ae7-24bb-4879-9459-c2941a2896e3 9e1d4620401f9b0264386e22f5f6195b {"aliquot_tag": "ALQ_dc932092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.WGS.N C3N-03791 GBM WGS blood_normal CPT0248220002 CPT0248220002.WholeGenome.RP-2158.bam 26498624553 BAM submitted_aligned CPTAC3 3ba6512e-5785-4e32-bce6-13f8b80aad3a 7a926e3c57879ea3f616ed361b6606ad {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03791.WGS.N.hg38 C3N-03791 GBM WGS blood_normal CPT0248220002 2b68f934-9910-4dc6-adc3-1cf82764a7a0_wgs_gdc_realn.bam 74021298457 BAM harmonized CPTAC3 dbb9edea-f9d6-4add-b71f-a6229f36db20 99d38b70852f3893163262003da66183 {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03791.WGS.T C3N-03791 GBM WGS tumor CPT0248160007 CPT0248160007.WholeGenome.RP-2158.bam 21814922440 BAM submitted_aligned CPTAC3 e8b7da1d-caf4-465b-871e-bd7d05cbc406 45206d11406eeeb9a7d1093a8edb4517 {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.WGS.T.hg38 C3N-03791 GBM WGS tumor CPT0248160007 a12853e7-7ad9-40e5-a71a-b50c18db7465_wgs_gdc_realn.bam 64319191270 BAM harmonized CPTAC3 9d67076c-f460-4452-b785-b2aa0e0ae8df 3ec471309e74bf8cec836fc07bcf8560 {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.WXS.N C3N-03791 GBM WXS blood_normal CPT0248220002 CPT0248220002.WholeExome.RP-1303.bam 33064684299 BAM submitted_aligned CPTAC3 d1b09246-acf2-42d0-9183-c449f8a30275 34dddf66eecfdae246f3fd63ed8d60af {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03791.WXS.N.hg38 C3N-03791 GBM WXS blood_normal CPT0248220002 2b68f934-9910-4dc6-adc3-1cf82764a7a0_wxs_gdc_realn.bam 44267823987 BAM harmonized CPTAC3 16b1732d-19aa-4414-a010-261a7c7295d1 b8f932556d9e3d7273ec07972d4e0c73 {"aliquot_tag": "ALQ_5892a491", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03791.WXS.T C3N-03791 GBM WXS tumor CPT0248160007 CPT0248160007.WholeExome.RP-1303.bam 20778146670 BAM submitted_aligned CPTAC3 8db33fa4-0c4d-4d3a-bb9e-843f5d15f771 4e975d1938dcb9509fb5549017504b16 {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor CPT0248160007 a12853e7-7ad9-40e5-a71a-b50c18db7465_wxs_gdc_realn.bam 28912229200 BAM harmonized CPTAC3 93a0f29b-98ed-46e0-8f8b-03e4b9e363db 4e299fb0c0ffda2f64f8d43588fb878b {"aliquot_tag": "ALQ_5bec8470", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.MethArray.Green.T C3N-03792 GBM Methylation_Array tumor CPT0292720006 204930640083_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b8fe91c6-995f-4b05-b60d-b8e52f6a1609 8ba9e745f47d25c00251e9dbc3242112 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.MethArray.Red.T C3N-03792 GBM Methylation_Array tumor CPT0292720006 204930640083_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 42e1721b-639e-41a9-9da0-69edce27749f def05517ac31cc5ae7d13d18cec96ddd {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.miRNA-Seq.S39_L007_R1.T C3N-03792 GBM miRNA-Seq tumor CPT0292720009 201209_UNC32-K00270_0265_AHJ55WBBXY_TGACCA_S39_L007_R1_001.unaln.bam 244313348 BAM S39_L007_R1 submitted_unaligned CPTAC3 3a95afa8-0cee-4b25-ae66-30901cbe1a34 8c8174ab15872e79256ee95566f44dd3 {"aliquot_tag": "ALQ_a0f8a635", "sample": "S39", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.miRNA-Seq.T.hg38 C3N-03792 GBM miRNA-Seq tumor CPT0292720009 83e55470-176d-4404-aef6-3d00b8b883b9_mirnaseq_gdc_realn.bam 273353919 BAM harmonized CPTAC3 64f2837e-ac5b-4b05-83db-cff8a7e202b3 36ecf70a4363c54b20eef640f49a758a {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.RNA-Seq.chimeric.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.chimeric.gdc_realn.bam 779969154 BAM chimeric harmonized CPTAC3 ccf89515-8469-45ac-8aac-2c03c029a903 ee2070cdd063419b586d65eee2b6aec0 {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.genomic.gdc_realn.bam 8634408522 BAM genomic harmonized CPTAC3 d32ab761-f74c-4264-b248-f792d99173e5 35966c147e5440caa1b61013f79483a3 {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.RNA-Seq.S9_L003_R1.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 dc36ac00-dcf4-4714-9a22-e1b19e708b23 61a607b7d255f541e9c5b6f656a0be25 {"aliquot_tag": "ALQ_a0f8a635", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.RNA-Seq.S9_L003_R2.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 a7b201e1-89f6-4622-b6d8-a6271f6ab253 a0f10daed3f37e74ae2c5b7b15f29aee {"aliquot_tag": "ALQ_a0f8a635", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.RNA-Seq.transcriptome.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.transcriptome.gdc_realn.bam 9436978940 BAM transcriptome harmonized CPTAC3 56f182b1-225f-4cf7-8c05-bd42c91609b5 e62e82dfe41ff3a02c6030b8f455690a {"aliquot_tag": "ALQ_a0f8a635", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.WGS.N C3N-03792 GBM WGS blood_normal CPT0292740002 CPT0292740002.WholeGenome.RP-2158.bam 26554543598 BAM submitted_aligned CPTAC3 9f010cbf-7023-41b0-b6d8-60d9f7ddc4c4 89b222f52c79b6526d36d48ec8b6417f {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03792.WGS.N.hg38 C3N-03792 GBM WGS blood_normal CPT0292740002 3d7cbf18-a043-454f-8905-cd5f885c8585_wgs_gdc_realn.bam 82016915053 BAM harmonized CPTAC3 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 b6ad168816423f3dd004758f59764d6f {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03792.WGS.T C3N-03792 GBM WGS tumor CPT0292720006 CPT0292720006.WholeGenome.RP-2158.bam 24306496119 BAM submitted_aligned CPTAC3 53615a7a-6378-4b4f-804c-266c02f512f1 7aee45e623770016561c477b8774c8c3 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.WGS.T.hg38 C3N-03792 GBM WGS tumor CPT0292720006 e3217e6c-3148-4949-9082-6a364c7f5166_wgs_gdc_realn.bam 70908445543 BAM harmonized CPTAC3 589da87e-23f6-4ea0-a617-aca6a439932b 8099416d0d490524e0e0a6d3a1172909 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.WXS.N C3N-03792 GBM WXS blood_normal CPT0292740002 CPT0292740002.WholeExome.RP-1303.bam 22254955383 BAM submitted_aligned CPTAC3 8e2c02df-13d4-4874-9846-dcaad8847f04 cb8a03e9845b788b41fea8d6d1a13584 {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03792.WXS.N.hg38 C3N-03792 GBM WXS blood_normal CPT0292740002 3d7cbf18-a043-454f-8905-cd5f885c8585_wxs_gdc_realn.bam 31161726626 BAM harmonized CPTAC3 adfca261-c468-4f30-8049-2aaa440ba357 85dad352932e40ff415668ba2fd49bbc {"aliquot_tag": "ALQ_b86a8a1d", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-03792.WXS.T C3N-03792 GBM WXS tumor CPT0292720006 CPT0292720006.WholeExome.RP-1303.bam 25530290850 BAM submitted_aligned CPTAC3 abcd035f-5b1a-4bad-8a77-53f065088d4b 176ee3a16da362a8f7c128c9b3ae0494 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03792.WXS.T.hg38 C3N-03792 GBM WXS tumor CPT0292720006 e3217e6c-3148-4949-9082-6a364c7f5166_wxs_gdc_realn.bam 34687747029 BAM harmonized CPTAC3 5dda791c-46ac-47fb-a77d-bd046ba2c254 e36159263c6ca8c48194d3f4c05c0370 {"aliquot_tag": "ALQ_3047bba4", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-03796.MethArray.Green.T C3N-03796 GBM Methylation_Array tumor CPT0285160006 204930640082_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 40e3819f-c307-4a74-8bf0-cf6bf9b4a471 0850ef4c3f1d8b73a96b3ff54fb25917 {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.MethArray.Red.T C3N-03796 GBM Methylation_Array tumor CPT0285160006 204930640082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 1b6cc960-ee6a-438a-858a-ef3fcd464304 e62b66b0649b8fdde0624bf2df96d814 {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.miRNA-Seq.S40_L007_R1.T C3N-03796 GBM miRNA-Seq tumor CPT0285160009 201209_UNC32-K00270_0265_AHJ55WBBXY_TTAGGC_S40_L007_R1_001.unaln.bam 218247021 BAM S40_L007_R1 submitted_unaligned CPTAC3 c8ea651a-1acd-4d2d-9eeb-ba9b6b431dba da3281ca424a165f206878cc53ad5d31 {"aliquot_tag": "ALQ_8a2cddf8", "sample": "S40", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.miRNA-Seq.T.hg38 C3N-03796 GBM miRNA-Seq tumor CPT0285160009 405473ee-4448-4b51-a15e-3f161b90d61b_mirnaseq_gdc_realn.bam 243404378 BAM harmonized CPTAC3 1605bf51-0676-46de-b9e0-3a010f67e1db 39d8b84a38546962c340b56a8360908a {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.RNA-Seq.chimeric.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.chimeric.gdc_realn.bam 860171610 BAM chimeric harmonized CPTAC3 d43e6ae8-74e0-4cb9-8220-f709d0672c9b ef3644e3a47c5c8ab447a9168c364038 {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.RNA-Seq.genomic.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.genomic.gdc_realn.bam 12060009459 BAM genomic harmonized CPTAC3 ae9438f6-91dd-4097-b5b5-d042c7453049 dd5c43d8e6c1ce0b5ca33e119b379b88 {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.RNA-Seq.S10_L003_R1.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 b454290d-cc02-4dba-9054-63f52ec8be2c da3b180947ae187d9f4913ac73b86a7e {"aliquot_tag": "ALQ_8a2cddf8", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.RNA-Seq.S10_L003_R2.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 a8e13d55-81ac-4ea7-bdf8-4113326e7051 43fc642d3589af3fbc6fcefddf6b6ff3 {"aliquot_tag": "ALQ_8a2cddf8", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.RNA-Seq.transcriptome.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.transcriptome.gdc_realn.bam 13364653290 BAM transcriptome harmonized CPTAC3 5b0d57a9-1278-4895-972b-47b5ddab33b0 c3c22f672159d7d3abd94bd152dadb76 {"aliquot_tag": "ALQ_8a2cddf8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.WGS.N C3N-03796 GBM WGS blood_normal CPT0285170002 CPT0285170002.WholeGenome.RP-2158.bam 26251928465 BAM submitted_aligned CPTAC3 0886d2a8-bb29-46eb-98f3-46981d11faf8 e4159fbe70eac8dd22a81cc854a476b9 {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03796.WGS.N.hg38 C3N-03796 GBM WGS blood_normal CPT0285170002 108e1690-f144-4cef-a077-4bf4a30f3205_wgs_gdc_realn.bam 75789850346 BAM harmonized CPTAC3 44090d4f-41a1-4a1c-840a-f1c20832adde 6124b6309417a093df21c6587dc921b9 {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03796.WGS.T C3N-03796 GBM WGS tumor CPT0285160006 CPT0285160006.WholeGenome.RP-2158.bam 19793089386 BAM submitted_aligned CPTAC3 79fd3ccf-6a9f-403d-9bc8-55212dc9ad1a 446a1f2dfb79766993216a4de9d98a8a {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.WGS.T.hg38 C3N-03796 GBM WGS tumor CPT0285160006 a34a1b81-a986-4402-a383-1bc5816a0e7e_wgs_gdc_realn.bam 59675089295 BAM harmonized CPTAC3 dab304ed-18fc-4407-b298-b1c9e04fadbf 3ca5702070c454197e98fc2a0cc0a6fb {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.WXS.N C3N-03796 GBM WXS blood_normal CPT0285170002 CPT0285170002.WholeExome.RP-1303.bam 21275282524 BAM submitted_aligned CPTAC3 98c74117-697c-4f57-a461-30992c6f2d94 bd6742acc427ba0e41e07f371ca81cf6 {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03796.WXS.N.hg38 C3N-03796 GBM WXS blood_normal CPT0285170002 108e1690-f144-4cef-a077-4bf4a30f3205_wxs_gdc_realn.bam 29516421065 BAM harmonized CPTAC3 c9b469ca-78ae-4955-b0cc-678779308d56 787b2447afb07824da0db7b8f64ac30f {"aliquot_tag": "ALQ_209e2dc0", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-03796.WXS.T C3N-03796 GBM WXS tumor CPT0285160006 CPT0285160006.WholeExome.RP-1303.bam 20614985474 BAM submitted_aligned CPTAC3 d58e49fd-4ac5-4873-a836-b161a9ba3847 ea5fcf1ee04819c2f7adc099589facc0 {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03796.WXS.T.hg38 C3N-03796 GBM WXS tumor CPT0285160006 a34a1b81-a986-4402-a383-1bc5816a0e7e_wxs_gdc_realn.bam 28580878405 BAM harmonized CPTAC3 afc3e47c-e82c-4335-a2da-fbf630370f1c acecf56f801b60b92d0cdd860cdf5dfe {"aliquot_tag": "ALQ_1a93c069", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-03797.MethArray.Green.T C3N-03797 GBM Methylation_Array tumor CPT0285180007 204367470127_R02C01_Grn.idat 13677892 IDAT Green NA CPTAC3 2ce08812-ff06-4a1f-958d-652569e29da1 d695e3e3ba532865b1a2178a66d55072 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.MethArray.Red.T C3N-03797 GBM Methylation_Array tumor CPT0285180007 204367470127_R02C01_Red.idat 13677892 IDAT Red NA CPTAC3 95850a31-5aff-402d-bbf2-dc2477ef5d54 5736191af39a7966368b996ce6130960 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.miRNA-Seq.S20_L001_R1.T C3N-03797 GBM miRNA-Seq tumor CPT0285180013 200403_UNC31-K00269_0274_AHCF7GBBXY_TATAAT_S20_L001_R1_001.unaln.bam 232799984 BAM S20_L001_R1 submitted_unaligned CPTAC3 83d7e3cc-9300-442b-8d38-4359db921f46 a0e1bbf76c3a11bf8c58a26939b0c577 {"aliquot_tag": "ALQ_ccd2bbc6", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.miRNA-Seq.T.hg38 C3N-03797 GBM miRNA-Seq tumor CPT0285180013 bb234d6a-efd6-4e21-ac76-757818f99f98_mirnaseq_gdc_realn.bam 251406345 BAM harmonized CPTAC3 24ac0596-02b4-4e6f-be96-aca82d40294f 9d09f3c2af288eebb19b1b710cf2f713 {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.RNA-Seq.chimeric.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.chimeric.gdc_realn.bam 23194323 BAM chimeric harmonized CPTAC3 baf59b82-2cd1-40d7-ad73-4de9e29c5496 c076f80477c479626b52ac37da973afe {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.RNA-Seq.genomic.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.genomic.gdc_realn.bam 5976909642 BAM genomic harmonized CPTAC3 52b60043-0b24-4968-989d-27507c80dee5 860f3e34809cf73e762c43a5e624b420 {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.RNA-Seq.S4_L004_R1.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R1_001.fastq.gz 2749145746 FASTQ S4_L004_R1 submitted_unaligned CPTAC3 ed5077a5-706a-4d83-a70f-6ec809c30895 d368f649f1a0eaf81a5e439a3ac25d08 {"aliquot_tag": "ALQ_ccd2bbc6", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.RNA-Seq.S4_L004_R2.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R2_001.fastq.gz 3139697205 FASTQ S4_L004_R2 submitted_unaligned CPTAC3 4e0d0413-eaf2-4b81-9784-5f28d36b9eb3 73746e532f724f0f9cf7042b01af74a4 {"aliquot_tag": "ALQ_ccd2bbc6", "sample": "S4", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.RNA-Seq.transcriptome.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.transcriptome.gdc_realn.bam 6630470859 BAM transcriptome harmonized CPTAC3 70896e31-3dc7-4512-bba7-8399a0f76b5f b8449876395680e501a8984699806c98 {"aliquot_tag": "ALQ_ccd2bbc6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.WGS.N C3N-03797 GBM WGS blood_normal CPT0285210002 CPT0285210002.WholeGenome.RP-2158.bam 35420074575 BAM submitted_aligned CPTAC3 c55e1798-2951-4cf7-abe0-790e9cb25eeb 9eb84ab8cbb2de729d29a4e3634be507 {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03797.WGS.N.hg38 C3N-03797 GBM WGS blood_normal CPT0285210002 966c6951-4f60-4deb-8ffe-9c5954afab8e_wgs_gdc_realn.bam 109141152803 BAM harmonized CPTAC3 c8df50e5-603b-4afa-987d-53514939e122 c0ecff19fd3602fa2b85e5c976b2ee1d {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03797.WGS.T C3N-03797 GBM WGS tumor CPT0285180007 CPT0285180007.WholeGenome.RP-2158.bam 22181936172 BAM submitted_aligned CPTAC3 496997c1-269b-4d43-9b29-26a24935dc5e 5d4c9b29feecffd081bfc429a5fad227 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.WGS.T.hg38 C3N-03797 GBM WGS tumor CPT0285180007 422a6465-56ff-4265-bb86-43cf4b882e46_wgs_gdc_realn.bam 65793765773 BAM harmonized CPTAC3 9ef14794-ec5b-4756-b14e-78e0a5b5f791 4738c9b04a1da07c9de51922668aa191 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.WXS.N C3N-03797 GBM WXS blood_normal CPT0285210002 CPT0285210002.WholeExome.RP-1303.bam 27620467859 BAM submitted_aligned CPTAC3 22d5c16f-aa32-42b0-bb46-b17b6a5d1d0f 205ea2d207428c31a8f76b7046847138 {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03797.WXS.N.hg38 C3N-03797 GBM WXS blood_normal CPT0285210002 966c6951-4f60-4deb-8ffe-9c5954afab8e_wxs_gdc_realn.bam 36770309194 BAM harmonized CPTAC3 d6247145-875d-4914-adf0-8b436ca75f7a 90634ae9fd856047bc5ef27111e64cb5 {"aliquot_tag": "ALQ_294aaace", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03797.WXS.T C3N-03797 GBM WXS tumor CPT0285180007 CPT0285180007.WholeExome.RP-1303.bam 19212444149 BAM submitted_aligned CPTAC3 185a06c7-ad16-4f79-9c1c-199ba99f7bcb 6b978ad5c155ed0b3b50f5c0098ed955 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03797.WXS.T.hg38 C3N-03797 GBM WXS tumor CPT0285180007 422a6465-56ff-4265-bb86-43cf4b882e46_wxs_gdc_realn.bam 27735760494 BAM harmonized CPTAC3 e8e6d27b-1138-4d47-a6f5-2a6035dcb281 c8a3a023eddc7d93cffd062545c5a902 {"aliquot_tag": "ALQ_d2a44e9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.MethArray.Green.T C3N-03800 GBM Methylation_Array tumor CPT0285220006 204372030011_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 72234503-3f55-4224-8a74-f4552cd4a8ea a3dd5f308a98e0cb92114e9d1c4f203e {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.MethArray.Red.T C3N-03800 GBM Methylation_Array tumor CPT0285220006 204372030011_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 e909c3bc-d014-4596-aa0a-ee0c815a6aaa 4dbb7606fed65e267b928ba47f2a7dac {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.miRNA-Seq.S10_L001_R1.T C3N-03800 GBM miRNA-Seq tumor CPT0285220009 200403_UNC31-K00269_0274_AHCF7GBBXY_CATGGC_S10_L001_R1_001.unaln.bam 227672680 BAM S10_L001_R1 submitted_unaligned CPTAC3 91e5c405-fb73-4322-b077-c2ee020debeb a4eb3caf4804ee66eb18af1ad5721209 {"aliquot_tag": "ALQ_f9380996", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.miRNA-Seq.T.hg38 C3N-03800 GBM miRNA-Seq tumor CPT0285220009 e4d4f4aa-b06c-4b4c-b6ec-49b28f16ad90_mirnaseq_gdc_realn.bam 249300125 BAM harmonized CPTAC3 62cde963-7d9c-42c2-a937-4aa15ca5eb2c 36b8e4dcda888ee9e79d71d8af75c43e {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.RNA-Seq.chimeric.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.chimeric.gdc_realn.bam 22689799 BAM chimeric harmonized CPTAC3 e4a56981-fa1b-4bae-8a50-e1feb1e14882 53e8b0a6fcc1a6e04140c348d6dd7dea {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.RNA-Seq.genomic.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.genomic.gdc_realn.bam 7196064905 BAM genomic harmonized CPTAC3 3f4a7b13-2e41-41a4-98f5-0d7d927c063e 03b4647fccd17ca1d7a3a13ee089846a {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.RNA-Seq.S26_L007_R1.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 a6980cb7-4d87-452d-ace8-f2419ef4d665 e5a36974625fcaa1574073eaadcef995 {"aliquot_tag": "ALQ_f9380996", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.RNA-Seq.S26_L007_R2.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 9a8d15f812faccb1b08f3b0d29e38b05 {"aliquot_tag": "ALQ_f9380996", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.RNA-Seq.transcriptome.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.transcriptome.gdc_realn.bam 10619622715 BAM transcriptome harmonized CPTAC3 378f7baa-58da-4c0f-867f-d8b969590e53 2ce0b5f48e970b15cd5e2b3eeeeab7ba {"aliquot_tag": "ALQ_f9380996", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.WGS.N C3N-03800 GBM WGS blood_normal CPT0285250002 CPT0285250002.WholeGenome.RP-2158.bam 25301880952 BAM submitted_aligned CPTAC3 bc71a97b-75d5-48b8-a5e2-a91bf65f43df 7f673a599cb0ffd0a0f13c2bd045c2b5 {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03800.WGS.N.hg38 C3N-03800 GBM WGS blood_normal CPT0285250002 74161594-9926-4852-9bef-076363ce5266_wgs_gdc_realn.bam 75210206981 BAM harmonized CPTAC3 c6e99476-96a8-4730-89ef-026f274e9488 ff8463a5b7fe6934eba67313c65dfbfe {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03800.WGS.T C3N-03800 GBM WGS tumor CPT0285220006 CPT0285220006.WholeGenome.RP-2158.bam 26028547154 BAM submitted_aligned CPTAC3 c7aec4a6-89a7-4e53-a246-d7c5fe230c7f c70782de695d9fb2803d8c4a55154d3e {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.WGS.T.hg38 C3N-03800 GBM WGS tumor CPT0285220006 27ccdf5d-88bc-4b87-be27-161ef297a99d_wgs_gdc_realn.bam 77812358866 BAM harmonized CPTAC3 24e3c427-04e9-489a-bbf6-4015af0f9693 18291a119b44daf422c02d4a144708ee {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.WXS.N C3N-03800 GBM WXS blood_normal CPT0285250002 CPT0285250002.WholeExome.RP-1303.bam 32100575262 BAM submitted_aligned CPTAC3 eb18f6f1-7305-4017-baa1-befeb8540b17 a42f8eed89642a8da59c86379d8542c2 {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03800.WXS.N.hg38 C3N-03800 GBM WXS blood_normal CPT0285250002 74161594-9926-4852-9bef-076363ce5266_wxs_gdc_realn.bam 43605032937 BAM harmonized CPTAC3 ca9914cc-5a12-4203-9c17-2de3a52076c9 3c278c076d42f5ad6f1844955d612d98 {"aliquot_tag": "ALQ_dcca0c0e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03800.WXS.T C3N-03800 GBM WXS tumor CPT0285220006 CPT0285220006.WholeExome.RP-1303.bam 24942224435 BAM submitted_aligned CPTAC3 21a8209e-d06c-4f45-a068-364e6a2215e4 5ccfbea5d3b36ac197316b86796fbf29 {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03800.WXS.T.hg38 C3N-03800 GBM WXS tumor CPT0285220006 27ccdf5d-88bc-4b87-be27-161ef297a99d_wxs_gdc_realn.bam 35179857229 BAM harmonized CPTAC3 b91c3e29-9d7c-4b06-b11c-4766adffd8b0 a15d9eff51df7a9c36ce01d0da376fca {"aliquot_tag": "ALQ_69871407", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.MethArray.Green.T C3N-03802 GBM Methylation_Array tumor CPT0285260006 204930630109_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 16acf3b2-3ca2-4d6c-9706-8bdac855ba41 5bed79c52ea0b76cff3f59eefde08350 {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.MethArray.Red.T C3N-03802 GBM Methylation_Array tumor CPT0285260006 204930630109_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa78e33a-ded8-4ded-b582-0fc9c1d06c8e 1fafe1e362094bfa98f8b09dc9955aeb {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.miRNA-Seq.S11_L001_R1.T C3N-03802 GBM miRNA-Seq tumor CPT0285260009 200403_UNC31-K00269_0274_AHCF7GBBXY_CATTTT_S11_L001_R1_001.unaln.bam 268580490 BAM S11_L001_R1 submitted_unaligned CPTAC3 f7d03e56-e8df-4d26-a669-966b95205b69 ed841d0243324dd55ef11873eaf967bd {"aliquot_tag": "ALQ_cb8af56", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.miRNA-Seq.T.hg38 C3N-03802 GBM miRNA-Seq tumor CPT0285260009 39665888-ab29-4c21-9429-f4ad8cca7352_mirnaseq_gdc_realn.bam 301143625 BAM harmonized CPTAC3 a46ceaa3-5238-4715-a632-3cb7851204df 84b32c58146c4b38cd1c48a28c2eb4a8 {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.RNA-Seq.chimeric.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.chimeric.gdc_realn.bam 29810577 BAM chimeric harmonized CPTAC3 822847f2-37f9-400a-b5ad-218c891e5ca8 1f4eb372646e7b9fbafaddf7ad5ad1d7 {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.RNA-Seq.genomic.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.genomic.gdc_realn.bam 8279487166 BAM genomic harmonized CPTAC3 374499cd-c493-431e-83b8-10bfbf72d51b 6547876e98d54fd6c7fe274d35f0e84a {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.RNA-Seq.S27_L007_R1.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 b0a7c76277d6adc6cb0ec59607e40ee6 {"aliquot_tag": "ALQ_cb8af56", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.RNA-Seq.S27_L007_R2.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 f86f26d6-0c6b-4120-b71f-4fd632f2ec9c 46cbf58d39d0711362c538637932909c {"aliquot_tag": "ALQ_cb8af56", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.RNA-Seq.transcriptome.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.transcriptome.gdc_realn.bam 10436169930 BAM transcriptome harmonized CPTAC3 50c8eae9-7e4e-4ada-b4dd-e7bf9892dffc 7eacdfa284f9b177ada6824f4b3edd73 {"aliquot_tag": "ALQ_cb8af56", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.WGS.N C3N-03802 GBM WGS blood_normal CPT0280960002 CPT0280960002.WholeGenome.RP-2158.bam 24435679576 BAM submitted_aligned CPTAC3 34fbd34a-ba89-4557-a705-0ced6d0cb40d 28a44f5f957c7a011ddf6e7a9bfbe06e {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03802.WGS.N.hg38 C3N-03802 GBM WGS blood_normal CPT0280960002 21f596c1-4a26-44b2-8c1b-4697d7884d6f_wgs_gdc_realn.bam 70976473049 BAM harmonized CPTAC3 d5ac4339-e870-47cf-99c4-4c305dfbcae8 59a26ed57e48b264f26e2ad6976d4c9a {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03802.WGS.T C3N-03802 GBM WGS tumor CPT0285260006 CPT0285260006.WholeGenome.RP-2158.bam 31983690940 BAM submitted_aligned CPTAC3 a04948ca-045f-407f-9740-559e4f672f82 053041f7537d16320cc9ed9fb935300a {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.WGS.T.hg38 C3N-03802 GBM WGS tumor CPT0285260006 dbd9368c-c526-4f91-b575-85678ca920d4_wgs_gdc_realn.bam 98847773464 BAM harmonized CPTAC3 14a6db1a-bd53-439a-9fe3-850628f370de 7b46d2004f77d6ae3e0e9be46991e5bf {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.WXS.N C3N-03802 GBM WXS blood_normal CPT0280960002 CPT0280960002.WholeExome.RP-1303.bam 31107793425 BAM submitted_aligned CPTAC3 eaf57764-4a59-4b7c-b752-6b47d9dadb10 9706a9de8a82dfd0e8dbe291e0e33920 {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03802.WXS.N.hg38 C3N-03802 GBM WXS blood_normal CPT0280960002 21f596c1-4a26-44b2-8c1b-4697d7884d6f_wxs_gdc_realn.bam 42162146910 BAM harmonized CPTAC3 873a455c-8270-4254-8033-313e94158f63 22df330d54a5b79a6d1bfa87edf037e8 {"aliquot_tag": "ALQ_a395a9ba", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03802.WXS.T C3N-03802 GBM WXS tumor CPT0285260006 CPT0285260006.WholeExome.RP-1303.bam 28080869995 BAM submitted_aligned CPTAC3 db174c32-951d-458b-9230-6b8ed2d3283a c0ccd28d7a185f933dff4279a0de8a31 {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03802.WXS.T.hg38 C3N-03802 GBM WXS tumor CPT0285260006 dbd9368c-c526-4f91-b575-85678ca920d4_wxs_gdc_realn.bam 37570077761 BAM harmonized CPTAC3 f485b85f-858c-41c8-99a5-02d2f889894b b55f72b63cb36a352e6b5acaa48809db {"aliquot_tag": "ALQ_9c07b2c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.MethArray.Green.T C3N-03810 GBM Methylation_Array tumor CPT0285300006 204930640083_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 d1b249f4-8b50-4d7b-824c-46fd2dabf739 fbaa953dde4d524e8051036c4208bbc3 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.MethArray.Red.T C3N-03810 GBM Methylation_Array tumor CPT0285300006 204930640083_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 ef992acc-6d0f-41bf-8739-44298c4c9a7d 88dd0cc6b840c65c919f15d42c60682e {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.miRNA-Seq.S12_L001_R1.T C3N-03810 GBM miRNA-Seq tumor CPT0285300009 200403_UNC31-K00269_0274_AHCF7GBBXY_CCAACA_S12_L001_R1_001.unaln.bam 232539673 BAM S12_L001_R1 submitted_unaligned CPTAC3 5c539aec-8211-452a-9eac-e95a863225db b4eec004d08918547749156c9a8ee684 {"aliquot_tag": "ALQ_48a48953", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.miRNA-Seq.T.hg38 C3N-03810 GBM miRNA-Seq tumor CPT0285300009 cfb72048-a42f-4dab-aa46-f58122a9257a_mirnaseq_gdc_realn.bam 257461966 BAM harmonized CPTAC3 bdf12979-375d-45de-bb02-d9cc3c93ddb4 494c7ddf751236c7db354a7ea386e14f {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.RNA-Seq.chimeric.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.chimeric.gdc_realn.bam 23161039 BAM chimeric harmonized CPTAC3 e366aafd-72ef-4a07-9af1-12ff5e30b954 f59b7750dc3e99fde6052199dfeef226 {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.RNA-Seq.genomic.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.genomic.gdc_realn.bam 6547827409 BAM genomic harmonized CPTAC3 06d81ee4-b619-4231-940f-ffc784ccda41 0a2e2c4bfbc5cb1f265f15314851aac7 {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.RNA-Seq.S28_L007_R1.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 8fbe432e-3582-4d23-ae52-931b334f2112 7ce943248cb178104c31b5b6fcbc5b44 {"aliquot_tag": "ALQ_48a48953", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.RNA-Seq.S28_L007_R2.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 c9bb314d-81a3-4b4a-b3c8-935f7db8d048 ca24c94d1f399d3a988e280690b67547 {"aliquot_tag": "ALQ_48a48953", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.RNA-Seq.transcriptome.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.transcriptome.gdc_realn.bam 9021127186 BAM transcriptome harmonized CPTAC3 b144fc02-d13a-4abb-979e-948e36635791 0b4dd8c3495691d9a94c36d1e38ae259 {"aliquot_tag": "ALQ_48a48953", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.WGS.N C3N-03810 GBM WGS blood_normal CPT0285330002 CPT0285330002.WholeGenome.RP-2158.bam 23111061366 BAM submitted_aligned CPTAC3 2e2c679f-7b26-4015-b244-45267471f2e2 583735d6fb9f3ff6ae6165c48a6602c9 {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03810.WGS.N.hg38 C3N-03810 GBM WGS blood_normal CPT0285330002 ca49ed01-ced5-4674-95c9-b77361506dbc_wgs_gdc_realn.bam 70217504692 BAM harmonized CPTAC3 4f081684-661c-4114-87e5-3ea5943244f4 7e406f1fc1cb5552f9b4498f62a6398b {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03810.WGS.T C3N-03810 GBM WGS tumor CPT0285300006 CPT0285300006.WholeGenome.RP-2158.bam 28905896477 BAM submitted_aligned CPTAC3 1ea41311-ec81-4ccb-b505-ffe1817637e1 c07f6d3bd529760c08cb9cbd4a035ebf {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.WGS.T.hg38 C3N-03810 GBM WGS tumor CPT0285300006 cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wgs_gdc_realn.bam 86575296711 BAM harmonized CPTAC3 7a8a0945-b68b-403f-8883-e04140b8e788 a007efe13045aee595530d1a2350e2f6 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.WXS.N C3N-03810 GBM WXS blood_normal CPT0285330002 CPT0285330002.WholeExome.RP-1303.bam 28716333027 BAM submitted_aligned CPTAC3 e44cb506-57f9-4b12-be9a-cc049696d254 5b6fdc2f477f57c0016e64bfbed4465d {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03810.WXS.N.hg38 C3N-03810 GBM WXS blood_normal CPT0285330002 ca49ed01-ced5-4674-95c9-b77361506dbc_wxs_gdc_realn.bam 39782441736 BAM harmonized CPTAC3 b4157794-616f-4717-8a72-45784b5619d4 4f79c1e5e5ca8f516e4cefb8eef7a234 {"aliquot_tag": "ALQ_98d62a0b", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03810.WXS.T C3N-03810 GBM WXS tumor CPT0285300006 CPT0285300006.WholeExome.RP-1303.bam 23403510103 BAM submitted_aligned CPTAC3 62c4ac3a-788e-453e-b514-8fae7927b604 423545bc151a6ef1f87f746ffa26c7f9 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03810.WXS.T.hg38 C3N-03810 GBM WXS tumor CPT0285300006 cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wxs_gdc_realn.bam 30576782514 BAM harmonized CPTAC3 2077b46c-6a73-4349-a5a8-a189fba4a1d0 1ccc0b99470fb25a5aca0de646866908 {"aliquot_tag": "ALQ_d81b94c2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03837.MethArray.Green.T C3N-03837 HNSCC Methylation_Array tumor CPT0236620006 203273200080_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e4207f9a-79ad-4905-9b36-cbb3d342847f 6d092b141aa0ac6c61b6482220df4ca3 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.MethArray.Red.T C3N-03837 HNSCC Methylation_Array tumor CPT0236620006 203273200080_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 45533b2d-e36e-48e5-b3e6-c035c8232c51 4e9ab1724cb30f0fc28bcd08c9c27f61 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.miRNA-Seq.A.hg38 C3N-03837 HNSCC miRNA-Seq tissue_normal CPT0236640006 d6191851-c4dd-4b0a-8f9a-fb2a1176dbc3_mirnaseq_gdc_realn.bam 242919448 BAM harmonized CPTAC3 cfbb1a61-1b75-41cd-8745-0ecdeb7bdf66 edce6f249524cdfe214c1e8c5fcaf356 {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03837.miRNA-Seq.S2_L005_R1.A C3N-03837 HNSCC miRNA-Seq tissue_normal CPT0236640006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L005_R1_001.unaln.bam 210722534 BAM S2_L005_R1 submitted_unaligned CPTAC3 d1a6eed9-4c6b-471f-9c20-77962f62aca3 5e5081a71a04e48a0d5b702915cb50ff {"aliquot_tag": "ALQ_11d4a57a", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03837.RNA-Seq.chimeric.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.chimeric.gdc_realn.bam 58766115 BAM chimeric harmonized CPTAC3 218e278c-66c7-4a43-b421-f1116cc24137 e180282dd5bad51dac43a33cc2edad0b {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03837.RNA-Seq.chimeric.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.chimeric.gdc_realn.bam 221615835 BAM chimeric harmonized CPTAC3 468d3841-946a-4302-9c82-537f4ec88399 c50d6319690902cb8f13a9879ec2d872 {"aliquot_tag": "ALQ_e2b4d4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.RNA-Seq.genomic.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.genomic.gdc_realn.bam 11344314559 BAM genomic harmonized CPTAC3 aaf2c3d0-bce4-4f1b-9bc0-b8950227b1a7 ad376b5df59b757eaf2f928e58388948 {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03837.RNA-Seq.genomic.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.genomic.gdc_realn.bam 7001857355 BAM genomic harmonized CPTAC3 01400e6b-5364-4188-8ebc-7a75b952c36e 1927d5e7840ae877e8e079dc48a725ad {"aliquot_tag": "ALQ_e2b4d4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.RNA-Seq.S13_L003_R1.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R1_001.fastq.gz 5232135560 FASTQ S13_L003_R1 submitted_unaligned CPTAC3 7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c 3e370611f896ea9b7723ad642dbbd469 {"aliquot_tag": "ALQ_11d4a57a", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03837.RNA-Seq.S13_L003_R2.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R2_001.fastq.gz 5292215494 FASTQ S13_L003_R2 submitted_unaligned CPTAC3 19e36b22-9eed-4846-9fe7-ae1df2d2183d 919be9289329a92dab6df8ecab00c5b0 {"aliquot_tag": "ALQ_11d4a57a", "sample": "S13", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03837.RNA-Seq.S5_L002_R1.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3292865459 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 91df6fd0-bb82-42e3-a4cc-94acc3a2dac5 6c91ebcf6e7f386fa56f4f48762a9bd6 {"aliquot_tag": "ALQ_e2b4d4b", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.RNA-Seq.S5_L002_R2.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3723913348 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 f0b82c84-e1cf-4703-9a71-9996f4c7149a 7c42532119f09023f1135aca231b35ff {"aliquot_tag": "ALQ_e2b4d4b", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.RNA-Seq.transcriptome.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.transcriptome.gdc_realn.bam 14336780033 BAM transcriptome harmonized CPTAC3 c5562a00-2d71-4bd2-bd03-db41dcdadaae 751ba0fc56b19c629fbe6bc2b75d018c {"aliquot_tag": "ALQ_11d4a57a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03837.RNA-Seq.transcriptome.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.transcriptome.gdc_realn.bam 9891991058 BAM transcriptome harmonized CPTAC3 e7c38702-2613-4880-b1f5-25b6bbd65cd8 4863b279863177112ef0cb24ad963fe9 {"aliquot_tag": "ALQ_e2b4d4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.WGS.N C3N-03837 HNSCC WGS blood_normal CPT0236680002 CPT0236680002.WholeGenome.RP-1303.bam 82569751510 BAM submitted_aligned CPTAC3 97880c85-4669-44f5-88e6-4a3300504cdc a43973858f6cc59228e7a92be6c052af {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03837.WGS.N.hg38 C3N-03837 HNSCC WGS blood_normal CPT0236680002 21c4c00d-3d39-4548-94de-36c1c2a6b931_wgs_gdc_realn.bam 119892775142 BAM harmonized CPTAC3 6cdb8054-2db6-430b-a978-7837cc0f271c e20d376114185ac124ec4745eb33799a {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03837.WGS.T C3N-03837 HNSCC WGS tumor CPT0236620006 CPT0236620006.WholeGenome.RP-1303.bam 61657173077 BAM submitted_aligned CPTAC3 4deee67e-9d6f-420e-8f25-74f7a4b34cb2 9899dda86899d8076f19afe8f90af169 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.WGS.T.hg38 C3N-03837 HNSCC WGS tumor CPT0236620006 662fe48b-3316-48a4-b9ff-478577986b86_wgs_gdc_realn.bam 92269320265 BAM harmonized CPTAC3 430c387b-4885-45bb-9e9e-d03b4100d0f7 36b15b929c9e9fa635ede50a1899f068 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.WXS.N C3N-03837 HNSCC WXS blood_normal CPT0236680002 CPT0236680002.WholeExome.RP-1303.bam 52424461182 BAM submitted_aligned CPTAC3 5fc224eb-d439-44e6-be55-aea8058b39f1 a619f1cd318b66479c2262b3aa7ea7bf {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03837.WXS.N.hg38 C3N-03837 HNSCC WXS blood_normal CPT0236680002 21c4c00d-3d39-4548-94de-36c1c2a6b931_wxs_gdc_realn.bam 72564979290 BAM harmonized CPTAC3 79f45856-ff0f-4b5c-a361-082cd8784e7b f4d3399351a3bac457e0f7f7627b4e5c {"aliquot_tag": "ALQ_d3498c62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03837.WXS.T C3N-03837 HNSCC WXS tumor CPT0236620006 CPT0236620006.WholeExome.RP-1303.bam 21190224503 BAM submitted_aligned CPTAC3 e898fe06-fc24-4764-a9e3-c2cea467a015 99f6794d07fb7d050a41c2251828b696 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03837.WXS.T.hg38 C3N-03837 HNSCC WXS tumor CPT0236620006 662fe48b-3316-48a4-b9ff-478577986b86_wxs_gdc_realn.bam 28807362529 BAM harmonized CPTAC3 b5a161b9-1470-45e8-ab61-fbd69447087b 19e369300f81bab493381b26c4604655 {"aliquot_tag": "ALQ_9e9450da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.MethArray.Green.T C3N-03839 PDA Methylation_Array tumor CPT0236700008 203561620043_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 193eedc0-51ff-4dd1-924d-24b65ca78862 fe573acf9e7f5f7dcb3e0c93e513bf3e {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.MethArray.Red.T C3N-03839 PDA Methylation_Array tumor CPT0236700008 203561620043_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 0f1b37f4-451c-4cdd-a219-bd7c2eb1641e 5ac43474cccacdb240f0edb03c9d92b5 {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.miRNA-Seq.S7_L004_R1.T C3N-03839 PDA miRNA-Seq tumor CPT0236700011 190712_UNC32-K00270_0192_BH7HL3BBXY_CACGAT_S7_L004_R1_001.unaln.bam 284421155 BAM S7_L004_R1 submitted_unaligned CPTAC3 db8dc575-3905-4064-bc66-5513b9faa360 dc6492aa8f419453593f6190aa213a7a {"aliquot_tag": "ALQ_a87774fd", "sample": "S7", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.miRNA-Seq.T.hg38 C3N-03839 PDA miRNA-Seq tumor CPT0236700011 5d3c4a12-3ee3-47ec-a6ca-9ed6e4184bdf_mirnaseq_gdc_realn.bam 321090712 BAM harmonized CPTAC3 b99c875c-d45d-4f35-9e62-d80c5144a65a 7950ac5eee326acf758d3ee5ce74005e {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.RNA-Seq.chimeric.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.chimeric.gdc_realn.bam 32431027 BAM chimeric harmonized CPTAC3 a4a24fb0-4ed0-43ee-8d03-2cab311f7a40 3b544b5466532acd9cd03c45fb386eae {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.RNA-Seq.genomic.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.genomic.gdc_realn.bam 8203912249 BAM genomic harmonized CPTAC3 fa27d52d-79e7-474a-a0ae-418af31657ec 445dadd14cbf4b90e3d266fd519ef99c {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.RNA-Seq.S7_L002_R1.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3838586486 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 56fe9c85-1d66-4676-a4ae-b27a67bdb36b 2835213af45a1577aefba16d18ff8c41 {"aliquot_tag": "ALQ_a87774fd", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.RNA-Seq.S7_L002_R2.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4280739338 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 bf2313fd-9f78-485d-be5a-58bd48fe3f4f 40b110a6ffc186ad33dcf1cff91812cc {"aliquot_tag": "ALQ_a87774fd", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.RNA-Seq.transcriptome.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.transcriptome.gdc_realn.bam 11222943471 BAM transcriptome harmonized CPTAC3 721ec1e9-8e81-4efd-9c9b-28d133ac56bf 9d866fec361b326168565d14da4803c6 {"aliquot_tag": "ALQ_a87774fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.WGS.N C3N-03839 PDA WGS blood_normal CPT0236770002 CPT0236770002.WholeGenome.RP-1303.bam 64401178895 BAM submitted_aligned CPTAC3 5cff73b6-f957-4eff-b739-4ee785dda967 475e52c48e9bce5e3de288d42ec478e2 {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03839.WGS.N.hg38 C3N-03839 PDA WGS blood_normal CPT0236770002 1039286f-054d-4248-9d88-ea57a0168b1a_wgs_gdc_realn.bam 95852254845 BAM harmonized CPTAC3 50e458bc-fb18-4bb9-b0bc-cc0770458159 e1a484f37157edc2801157cdb184f1b1 {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03839.WGS.T C3N-03839 PDA WGS tumor CPT0236700008 CPT0236700008.WholeGenome.RP-1303.bam 139511227543 BAM submitted_aligned CPTAC3 5711adc2-1fcb-4ba7-90fc-2cc94784d99d 4abf8e24b864f349acc7c5268fbdaaa3 {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.WGS.T.hg38 C3N-03839 PDA WGS tumor CPT0236700008 fad48c67-400c-44db-a445-b0f3ccbb0a81_wgs_gdc_realn.bam 202433902976 BAM harmonized CPTAC3 30fd26a4-5025-4b1d-9be6-c2208245632c e004a2f0340c6add79b0acd0eece4a7d {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.WXS.N C3N-03839 PDA WXS blood_normal CPT0236770002 CPT0236770002.WholeExome.RP-1303.bam 29207806148 BAM submitted_aligned CPTAC3 fce9b8e4-da7d-4536-ac32-eab980b95a60 55972f298eb28abc600ef96eb741d44a {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03839.WXS.N.hg38 C3N-03839 PDA WXS blood_normal CPT0236770002 1039286f-054d-4248-9d88-ea57a0168b1a_wxs_gdc_realn.bam 40713284186 BAM harmonized CPTAC3 714e1407-3f82-466a-86bf-85ecdf3aae45 47b4f088892b7a51e4fea4aa1524e284 {"aliquot_tag": "ALQ_9a45c816", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03839.WXS.T C3N-03839 PDA WXS tumor CPT0236700008 CPT0236700008.WholeExome.RP-1303.bam 54711804365 BAM submitted_aligned CPTAC3 372bbdfe-401e-4756-9c48-d626cfb024fc d9881ca6c2f505f6c905239b82bedbba {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03839.WXS.T.hg38 C3N-03839 PDA WXS tumor CPT0236700008 fad48c67-400c-44db-a445-b0f3ccbb0a81_wxs_gdc_realn.bam 75028007644 BAM harmonized CPTAC3 f68a8961-0ff4-41c4-b102-a75b4f05e33f 53b5da5fd09fc8132ff30596ceca1c98 {"aliquot_tag": "ALQ_c8b0fd18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.MethArray.Green.A C3N-03840 PDA Methylation_Array tissue_normal CPT0236800010 203561620080_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 130b2c72-10fe-4b42-93ab-9ebe7a4c2f70 e99d2cdeb4fd0ddae04b11ead4c0d808 {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03840.MethArray.Green.T C3N-03840 PDA Methylation_Array tumor CPT0236780008 203561450099_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 21050512-822f-4f8a-8914-d211d3bc04e8 0005075260f8ffc0b6f3a69a7193dac8 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.MethArray.Red.A C3N-03840 PDA Methylation_Array tissue_normal CPT0236800010 203561620080_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 f8773038-e974-46f2-9bc3-286a6e7ce815 655410f876d4b48e50eb48363b98dddc {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03840.MethArray.Red.T C3N-03840 PDA Methylation_Array tumor CPT0236780008 203561450099_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 e4d0bd37-3c2a-4725-bff6-09b6cf855b88 e5f0090095627fe3b002f2f648e31de4 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.miRNA-Seq.S48_L004_R1.T C3N-03840 PDA miRNA-Seq tumor CPT0236780011 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L004_R1_001.unaln.bam 219431151 BAM S48_L004_R1 submitted_unaligned CPTAC3 4fb76ba7-e571-4f96-bddd-8117d3ebb992 61f65883be7f3e968a8b503f0dd45f3d {"aliquot_tag": "ALQ_98073f3c", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.miRNA-Seq.T.hg38 C3N-03840 PDA miRNA-Seq tumor CPT0236780011 1651b695-c146-475c-b6fc-eeca00702fdd_mirnaseq_gdc_realn.bam 250347903 BAM harmonized CPTAC3 0f65ab84-519f-4b16-8618-f8e60ee5f319 655f1c2688fc5bb8c7b3e9d89e982ce5 {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.RNA-Seq.chimeric.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.chimeric.gdc_realn.bam 27361691 BAM chimeric harmonized CPTAC3 9753439b-1f63-4552-8e9c-97f1f9028745 24b253aec813f5e0966e1e5f537fd845 {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.RNA-Seq.genomic.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.genomic.gdc_realn.bam 7067452295 BAM genomic harmonized CPTAC3 87116042-5481-48d1-b2c7-e467bc95a332 8c1a6fabd6407ae8ec2686295518b1d8 {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.RNA-Seq.S19_L006_R1.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R1_001.fastq.gz 3427969856 FASTQ S19_L006_R1 submitted_unaligned CPTAC3 0f99208f-7c99-4c60-9700-e2f270009f77 ebd484d66dedde60c84bffce2580d11a {"aliquot_tag": "ALQ_98073f3c", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.RNA-Seq.S19_L006_R2.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R2_001.fastq.gz 3695037407 FASTQ S19_L006_R2 submitted_unaligned CPTAC3 08696071-b690-42cc-97dd-ea0d068a034b 76ab7a6835614ef09c6db515f7076463 {"aliquot_tag": "ALQ_98073f3c", "sample": "S19", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.RNA-Seq.transcriptome.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.transcriptome.gdc_realn.bam 9810008498 BAM transcriptome harmonized CPTAC3 b61d0590-7642-4766-b18d-0fad143de133 ab952a2686607489a432d397b215598e {"aliquot_tag": "ALQ_98073f3c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.WGS.N C3N-03840 PDA WGS blood_normal CPT0236840002 CPT0236840002.WholeGenome.RP-1303.bam 66186275812 BAM submitted_aligned CPTAC3 c16f0ba9-ca9d-4db4-baa5-ad30fe6317e2 4e49d57e72df91a71574c49280673ad6 {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03840.WGS.N.hg38 C3N-03840 PDA WGS blood_normal CPT0236840002 dbcb1072-3b41-4a75-9ba1-267a7b85db21_wgs_gdc_realn.bam 97670561709 BAM harmonized CPTAC3 9a21e1aa-6072-40a7-9ecd-453e7ba0ff63 d2a7f74aefb86497c5b9c8016c7683b8 {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03840.WGS.T C3N-03840 PDA WGS tumor CPT0236780008 CPT0236780008.WholeGenome.RP-1303.bam 142968625732 BAM submitted_aligned CPTAC3 71239b96-5393-4d07-b2a1-add87e4d7d7b fdc0abee7f0ff03ef36ed0a79eefe88e {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.WGS.T.hg38 C3N-03840 PDA WGS tumor CPT0236780008 c0d6a979-077e-4b15-b478-8ab5444bf3d6_wgs_gdc_realn.bam 211413009553 BAM harmonized CPTAC3 ab3c777a-1f53-4860-ae9d-6c8cd0492743 d95cf166d4c08e9c75d842fbd8ff4001 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.WXS.A C3N-03840 PDA WXS tissue_normal CPT0236800010 CPT0236800010.WholeExome.RP-1303.bam 17235991261 BAM submitted_aligned CPTAC3 ba99be57-21e6-419d-83e7-767ca7f5f4af 2acf7018c9e0253df3188e7ab9b6783a {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03840.WXS.A.hg38 C3N-03840 PDA WXS tissue_normal CPT0236800010 9ee6dcfb-43cc-4cbe-b4d6-c72b206dec75_wxs_gdc_realn.bam 23408923012 BAM harmonized CPTAC3 7d6c412b-73b8-4886-be18-4cbee4c0f121 358105d5e1af47805a97e4fd66a22dc8 {"aliquot_tag": "ALQ_2e26f6be", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03840.WXS.N C3N-03840 PDA WXS blood_normal CPT0236840002 CPT0236840002.WholeExome.RP-1303.bam 21239249459 BAM submitted_aligned CPTAC3 02dc970a-c169-435f-a2fc-e2c37cfee7e5 793be3af724f022865f87724eb718fac {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03840.WXS.N.hg38 C3N-03840 PDA WXS blood_normal CPT0236840002 dbcb1072-3b41-4a75-9ba1-267a7b85db21_wxs_gdc_realn.bam 28968066458 BAM harmonized CPTAC3 fb512afa-f14a-4c2f-9f6c-a76af97a2237 d26a00eba74167f40576d42a1df7ea50 {"aliquot_tag": "ALQ_2cb30013", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03840.WXS.T C3N-03840 PDA WXS tumor CPT0236780008 CPT0236780008.WholeExome.RP-1303.bam 47135846378 BAM submitted_aligned CPTAC3 141a7b97-69ea-46db-9c93-45b61dd36cb3 e876e7e7ae30c41ead740cb07f703274 {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03840.WXS.T.hg38 C3N-03840 PDA WXS tumor CPT0236780008 c0d6a979-077e-4b15-b478-8ab5444bf3d6_wxs_gdc_realn.bam 65813966191 BAM harmonized CPTAC3 894038d4-3aeb-422d-8e7a-6502f4dcecae 0a3caafb81aa1fc6e6a905d133b2451e {"aliquot_tag": "ALQ_f8c0b6d9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.MethArray.Green.A C3N-03841 HNSCC Methylation_Array tissue_normal CPT0236870009 203219650071_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e87b2f10-f4ad-4736-af93-806b656a1ecc bb54a4452de09377cb53c7be428d35ca {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.MethArray.Green.T C3N-03841 HNSCC Methylation_Array tumor CPT0236850007 203273200155_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4dad86f9-83e2-459b-8bcc-d7ead4b9dc2a 42c128d028cdd47b55c973eb4f25e6af {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.MethArray.Red.A C3N-03841 HNSCC Methylation_Array tissue_normal CPT0236870009 203219650071_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 e4143e4f-53c5-49d1-b6aa-3cf8dc72910f 2a2cbd31f5e60c6289fd3da3c6de4df5 {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.MethArray.Red.T C3N-03841 HNSCC Methylation_Array tumor CPT0236850007 203273200155_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 0f19a7d2-2cb0-43b9-9419-d9983c92b818 df020f547ccd292df4628609edd84ffc {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.miRNA-Seq.A.hg38 C3N-03841 HNSCC miRNA-Seq tissue_normal CPT0236870006 42f95d4d-0feb-4fbe-bb55-14d3cbb0d686_mirnaseq_gdc_realn.bam 242850677 BAM harmonized CPTAC3 f0a22005-201a-4440-9a4c-bffaea3f826b e11b8d69f7479ba6316ea204b6164392 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.miRNA-Seq.S34_L004_R1.T C3N-03841 HNSCC miRNA-Seq tumor CPT0236850010 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L004_R1_001.unaln.bam 242601608 BAM S34_L004_R1 submitted_unaligned CPTAC3 deccc5ad-9699-44a5-a47b-01e9288ed5cc 3c9525930dd66ca6844a471b1de207d8 {"aliquot_tag": "ALQ_e6c679ce", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.miRNA-Seq.S3_L005_R1.A C3N-03841 HNSCC miRNA-Seq tissue_normal CPT0236870006 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L005_R1_001.unaln.bam 215176154 BAM S3_L005_R1 submitted_unaligned CPTAC3 d59b787b-3928-4dc0-a206-cf74cc871e0d 80442d4ce2620ad765bc3016d53bf293 {"aliquot_tag": "ALQ_6c7ebeda", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.miRNA-Seq.T.hg38 C3N-03841 HNSCC miRNA-Seq tumor CPT0236850010 c8e7981f-9836-4e92-bd9f-cea01726c9ae_mirnaseq_gdc_realn.bam 270310534 BAM harmonized CPTAC3 2c262bab-0260-4f33-847f-547978b8e9e5 be8494678a0b4000477ebaf7590ac0e6 {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.RNA-Seq.chimeric.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.chimeric.gdc_realn.bam 43529745 BAM chimeric harmonized CPTAC3 b7b8a0e6-b372-419e-af4a-aace2e1b76b3 b789ca368d4043794017efa44dc07e27 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.RNA-Seq.chimeric.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.chimeric.gdc_realn.bam 208487017 BAM chimeric harmonized CPTAC3 999d6285-ed76-403e-9e03-9c1f84a77b6f 186d3d30cc13a43949390e5482d49d35 {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.RNA-Seq.genomic.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.genomic.gdc_realn.bam 7783288816 BAM genomic harmonized CPTAC3 bd7cca37-b5d3-4e4b-9662-772ffef3ecd6 fd7411ced6632295c9d10be9bb63e879 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.RNA-Seq.genomic.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.genomic.gdc_realn.bam 7702449243 BAM genomic harmonized CPTAC3 0240e958-1701-4c93-bf5c-cb30247c36de 697815d414574159ed48fe17090d47df {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.RNA-Seq.S15_L003_R1.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R1_001.fastq.gz 3550970262 FASTQ S15_L003_R1 submitted_unaligned CPTAC3 10c05c73-0d70-475e-bac0-5dcf5bf85d17 0b52bebe65785a8e3180fb9d54c474bf {"aliquot_tag": "ALQ_6c7ebeda", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.RNA-Seq.S15_L003_R2.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R2_001.fastq.gz 3947291636 FASTQ S15_L003_R2 submitted_unaligned CPTAC3 da96e246-ab71-40a5-b74e-9866c2337b60 14415981bbb4fffe522db298a24f807d {"aliquot_tag": "ALQ_6c7ebeda", "sample": "S15", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.RNA-Seq.S6_L002_R1.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 3549375907 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 83a78534-e8d3-4666-bea6-4e3b400853bf a9f424a6ed6dbf6ffeda183bdd6422ef {"aliquot_tag": "ALQ_e6c679ce", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.RNA-Seq.S6_L002_R2.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3973248182 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 1cb6ed3c-8679-4136-92fb-c67fb5769e88 e6cf5fcbc775d90ac1775b47729aa213 {"aliquot_tag": "ALQ_e6c679ce", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.RNA-Seq.transcriptome.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.transcriptome.gdc_realn.bam 10637905808 BAM transcriptome harmonized CPTAC3 4e36c269-6112-4763-aafd-7c5d647033ae 0e176cb22f0daf1f83555d404d301902 {"aliquot_tag": "ALQ_6c7ebeda", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.RNA-Seq.transcriptome.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.transcriptome.gdc_realn.bam 9604896690 BAM transcriptome harmonized CPTAC3 5fc39563-d7e7-4449-a5fa-f2240198ee6c b2aeb5f0165f840e3795655d23b4419a {"aliquot_tag": "ALQ_e6c679ce", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.WGS.N C3N-03841 HNSCC WGS blood_normal CPT0236910002 CPT0236910002.WholeGenome.RP-1303.bam 73153340369 BAM submitted_aligned CPTAC3 c594ebc8-21d7-477d-a1ba-db3ea322f000 0d158c28d56b5f5938e3e9e7142ad212 {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03841.WGS.N.hg38 C3N-03841 HNSCC WGS blood_normal CPT0236910002 33799056-6d57-49ae-b723-1285c31a3dbf_wgs_gdc_realn.bam 107632541446 BAM harmonized CPTAC3 155c0d7b-51d2-46e7-8280-b0878a0a4caf 623d1dca48eea17248ae2256b17681f5 {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03841.WGS.T C3N-03841 HNSCC WGS tumor CPT0236850007 CPT0236850007.WholeGenome.RP-1303.bam 72231698399 BAM submitted_aligned CPTAC3 2b20f628-1bc4-471b-9f44-324b543006f9 7179b4f3fff6329e6a1f2f5d4d70ef9e {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.WGS.T.hg38 C3N-03841 HNSCC WGS tumor CPT0236850007 58fab107-27f0-4322-a1a5-b40044b7dc29_wgs_gdc_realn.bam 108837277495 BAM harmonized CPTAC3 18012290-35ae-4a1f-9647-c538c7122013 1ea024b2f6aa9fc4839a0754d4ac04b6 {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.WXS.A C3N-03841 HNSCC WXS tissue_normal CPT0236870009 CPT0236870009.WholeExome.RP-1303.bam 23988442033 BAM submitted_aligned CPTAC3 9c140618-460f-47d2-b943-33b8973d2274 f688f589a6b52d207fa098d0f696f6b6 {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.WXS.A.hg38 C3N-03841 HNSCC WXS tissue_normal CPT0236870009 34274c2e-10d5-4997-8754-402017a2fe85_wxs_gdc_realn.bam 33212487326 BAM harmonized CPTAC3 99d99f98-622d-4ea6-802a-87ff22f97bc7 134308077c4172e88317100ea5539276 {"aliquot_tag": "ALQ_fcc1a34b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03841.WXS.N C3N-03841 HNSCC WXS blood_normal CPT0236910002 CPT0236910002.WholeExome.RP-1303.bam 22332229934 BAM submitted_aligned CPTAC3 899798ad-560f-43cb-92de-5d0a48f1bd4e 87c63e9cf85919f6e0f6c3cfeb5c568c {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03841.WXS.N.hg38 C3N-03841 HNSCC WXS blood_normal CPT0236910002 33799056-6d57-49ae-b723-1285c31a3dbf_wxs_gdc_realn.bam 30253536570 BAM harmonized CPTAC3 1b4033bc-022d-421d-a5ce-fbad7e0c8b15 783663098b21980854048bb3033d4179 {"aliquot_tag": "ALQ_2f0f5cc6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03841.WXS.T C3N-03841 HNSCC WXS tumor CPT0236850007 CPT0236850007.WholeExome.RP-1303.bam 27156241927 BAM submitted_aligned CPTAC3 c87b1f95-71be-4055-8329-1b78a58cd982 5a9ff99a180cb8eaa62830163a08d57a {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03841.WXS.T.hg38 C3N-03841 HNSCC WXS tumor CPT0236850007 58fab107-27f0-4322-a1a5-b40044b7dc29_wxs_gdc_realn.bam 37420446846 BAM harmonized CPTAC3 d6068c4c-863a-497f-a0fa-26f29d6aaf5b 1d5e4410fd29d04a91ab30b62b5ada65 {"aliquot_tag": "ALQ_61b9dd2c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.MethArray.Green.A C3N-03848 LSCC Methylation_Array tissue_normal CPT0237080009 203219650003_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6aad6312-1f05-4ef5-b63a-710ef5dd0980 23b1b244b3e61866cd011a708da59a6c {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.MethArray.Green.T C3N-03848 LSCC Methylation_Array tumor CPT0237060007 203219640172_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 f1c068bb-d3be-4d37-9a82-8c3c0e39296b f5d3631a743373931fd0eefab0d16233 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.MethArray.Red.A C3N-03848 LSCC Methylation_Array tissue_normal CPT0237080009 203219650003_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 9c9b6d26-3166-4c9f-b7e1-c928ca79f8ed 0f785860c43ae422b2edf023dabb0e04 {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.MethArray.Red.T C3N-03848 LSCC Methylation_Array tumor CPT0237060007 203219640172_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 5d892b78-76d5-4963-9043-b861e4119556 eb17edeaef8a709a4d7f1f72a1575129 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.miRNA-Seq.A.hg38 C3N-03848 LSCC miRNA-Seq tissue_normal CPT0237080006 d707b158-5e12-42f9-8436-af858282724a_mirnaseq_gdc_realn.bam 221048792 BAM harmonized CPTAC3 f9c76868-72c2-4030-8ae0-fae688e1cc0f d8a64cd5c9ea58b3ec1a0d9dc1c9306d {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.miRNA-Seq.S22_L005_R1.A C3N-03848 LSCC miRNA-Seq tissue_normal CPT0237080006 190206_UNC31-K00269_0191_AH2WY5BBXY_CAACTA_S22_L005_R1_001.unaln.bam 196967861 BAM S22_L005_R1 submitted_unaligned CPTAC3 c005f987-269c-48ea-a0af-a9ac353d8da5 ccd831d0c5ec9d5fea2d116073e3d970 {"aliquot_tag": "ALQ_a40aa0d2", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.miRNA-Seq.S34_L004_R1.T C3N-03848 LSCC miRNA-Seq tumor CPT0237060010 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGTCA_S34_L004_R1_001.unaln.bam 185330419 BAM S34_L004_R1 submitted_unaligned CPTAC3 24c63ee6-19f6-4bfb-ba9b-d2f3fb3a3878 9ca0b86957dae4bc6930327182d4794a {"aliquot_tag": "ALQ_eb428ac7", "sample": "S34", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.miRNA-Seq.T.hg38 C3N-03848 LSCC miRNA-Seq tumor CPT0237060010 bc02b4cf-7071-4f2d-8c58-b57d8d5f6a93_mirnaseq_gdc_realn.bam 202289915 BAM harmonized CPTAC3 6f4d76e0-1e65-4084-9af5-25159cea6141 fc6480918f8cf2ee46920d8c43d78649 {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.RNA-Seq.chimeric.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.chimeric.gdc_realn.bam 307226795 BAM chimeric harmonized CPTAC3 33167ba4-13a7-4251-bc6d-810679cd0d3a e4c32c8319b332732487e1422fdd5629 {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.RNA-Seq.chimeric.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.chimeric.gdc_realn.bam 147531806 BAM chimeric harmonized CPTAC3 d6a10a6a-0dea-476e-8eb5-6bfaf6271c8e aec5c92921048eca2774afec265b8a9f {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.RNA-Seq.genomic.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.genomic.gdc_realn.bam 8345081835 BAM genomic harmonized CPTAC3 a0fe70a6-83c0-4e65-a68d-363e48568666 258703702796a2636f9ea55cd770b1f8 {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.RNA-Seq.genomic.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.genomic.gdc_realn.bam 8160515905 BAM genomic harmonized CPTAC3 b034869e-b2ce-4735-9ae5-19d9e0dc4327 69a68ade426830f3ae65da72e4747832 {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.RNA-Seq.S23_L006_R1.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3783211123 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 de23d600-f38b-451b-a74e-3e4de1d7d127 83f27879083cd98459ad0ba44de85154 {"aliquot_tag": "ALQ_a40aa0d2", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.RNA-Seq.S23_L006_R2.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4239869487 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 21d3047a-3217-4c7d-bd89-2b5473199e14 f3c4a2b838f998856e2f36c756ca5579 {"aliquot_tag": "ALQ_a40aa0d2", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.RNA-Seq.S9_L003_R1.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R1_001.fastq.gz 3588982693 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 caf344ba-b89a-4c5e-8f44-e3e7699a7988 ec2ab3d87523c790d111824cc3219652 {"aliquot_tag": "ALQ_eb428ac7", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.RNA-Seq.S9_L003_R2.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R2_001.fastq.gz 3900758585 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 ff9867f3-3c78-4a82-9870-5e942377c57a 11716e471407667e886d58c2ca643a8c {"aliquot_tag": "ALQ_eb428ac7", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.RNA-Seq.transcriptome.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.transcriptome.gdc_realn.bam 8269488321 BAM transcriptome harmonized CPTAC3 735224a4-2ba4-453c-aced-2ff0bdf139aa d95144b0923447176735f40919bf6a55 {"aliquot_tag": "ALQ_a40aa0d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.RNA-Seq.transcriptome.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.transcriptome.gdc_realn.bam 8636811657 BAM transcriptome harmonized CPTAC3 d39b6fdf-886d-4de1-82ab-96391dce1c2b 898538bc099dab45f820afd6475240d0 {"aliquot_tag": "ALQ_eb428ac7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.WGS.N C3N-03848 LSCC WGS blood_normal CPT0237120002 CPT0237120002.WholeGenome.RP-1303.bam 55342381377 BAM submitted_aligned CPTAC3 e61169b2-2da7-4f6e-ae92-b99bdd5382f0 1ee9fb0970de9c9fe2c0b78f260eaa6d {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03848.WGS.N.hg38 C3N-03848 LSCC WGS blood_normal CPT0237120002 0df7e1bd-c7e9-46b6-9a8a-733b0aeb8a3d_wgs_gdc_realn.bam 80844526203 BAM harmonized CPTAC3 b4a26c06-a33e-458c-8869-1a9718e31f69 2a314298b9d849802e25afbf3d0004cc {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03848.WGS.T C3N-03848 LSCC WGS tumor CPT0237060007 CPT0237060007.WholeGenome.RP-1303.bam 60683173651 BAM submitted_aligned CPTAC3 6a2e1c30-edba-439d-aaa1-5cd219a9cf6a bd73b5eac9c9e95e82f8056cc808c68f {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.WGS.T.hg38 C3N-03848 LSCC WGS tumor CPT0237060007 db22b708-9f28-46e1-a158-e680c16abfc9_wgs_gdc_realn.bam 89612161267 BAM harmonized CPTAC3 713b6dc0-5c8a-408c-abd8-60f7a4848da6 493c17d6845aee5ae8e885c6bae84fd4 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.WXS.A C3N-03848 LSCC WXS tissue_normal CPT0237080009 CPT0237080009.WholeExome.RP-1303.bam 31123801174 BAM submitted_aligned CPTAC3 11d8d35a-3fc1-439e-8278-2dc3d3f2aaac 904c1965d9b43c89a30ac5d11bc44a6a {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.WXS.A.hg38 C3N-03848 LSCC WXS tissue_normal CPT0237080009 fdb5c307-9fb3-4beb-9798-51bf1a62d7c6_wxs_gdc_realn.bam 42880193644 BAM harmonized CPTAC3 f8f5acc3-1cab-4767-93e3-dff4cc256649 e7a167ea23809651298ebc1e42e4eecf {"aliquot_tag": "ALQ_34b5bd43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03848.WXS.N C3N-03848 LSCC WXS blood_normal CPT0237120002 CPT0237120002.WholeExome.RP-1303.bam 24660109461 BAM submitted_aligned CPTAC3 3257b1fa-4fb2-440c-96c4-a527bc9765ac 2baaead16b0f446a5320eb624e83d9dc {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03848.WXS.N.hg38 C3N-03848 LSCC WXS blood_normal CPT0237120002 0df7e1bd-c7e9-46b6-9a8a-733b0aeb8a3d_wxs_gdc_realn.bam 33676179556 BAM harmonized CPTAC3 5d0b27e6-ab79-441b-b517-45a1bcbdfc7d 5289dc9e4da7919a2255b7db8bbe4dc5 {"aliquot_tag": "ALQ_228bafcf", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03848.WXS.T C3N-03848 LSCC WXS tumor CPT0237060007 CPT0237060007.WholeExome.RP-1303.bam 31171111955 BAM submitted_aligned CPTAC3 73d100ed-73ca-4352-9230-598360864f34 cc97fa9f3328124a9e9dd20f06f1e443 {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03848.WXS.T.hg38 C3N-03848 LSCC WXS tumor CPT0237060007 db22b708-9f28-46e1-a158-e680c16abfc9_wxs_gdc_realn.bam 42955515337 BAM harmonized CPTAC3 0e575559-c2df-4394-9c04-77f9138c139b 0a29f9f866cbdc6a6bfa0dad77e577ae {"aliquot_tag": "ALQ_6c3d2e25", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.MethArray.Green.A C3N-03849 HNSCC Methylation_Array tissue_normal CPT0237150009 203271740156_R02C01_Grn.idat 13676210 IDAT Green NA CPTAC3 748e422f-0857-4aaa-a9a1-9e12fda048c4 262fd7e1fe7bf9352258300d7f1ba5f3 {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.MethArray.Green.T C3N-03849 HNSCC Methylation_Array tumor CPT0237130007 203271750010_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 91925321-4b5a-4f30-83b4-524408ee45d7 ed5a6e4ba3bb5b6ff46f48d6323fd526 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.MethArray.Red.A C3N-03849 HNSCC Methylation_Array tissue_normal CPT0237150009 203271740156_R02C01_Red.idat 13676210 IDAT Red NA CPTAC3 8ad8b658-5401-4d07-8d94-148616426ac5 8f64bed1a4147c4b2039ded14aa69940 {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.MethArray.Red.T C3N-03849 HNSCC Methylation_Array tumor CPT0237130007 203271750010_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 0ff7afb2-a3cd-4c09-ade3-a988ec7657ab e31a3abde86599fab652db65ff58b625 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.miRNA-Seq.A.hg38 C3N-03849 HNSCC miRNA-Seq tissue_normal CPT0237150006 6b0dd3d5-01c1-4372-8a4c-8447e01ec4a4_mirnaseq_gdc_realn.bam 350987015 BAM harmonized CPTAC3 ef14b503-b765-4b2e-ae40-558ce1b19e05 61394c7902560df4293c71ad21a61363 {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.miRNA-Seq.S35_L004_R1.T C3N-03849 HNSCC miRNA-Seq tumor CPT0237130010 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L004_R1_001.unaln.bam 212812537 BAM S35_L004_R1 submitted_unaligned CPTAC3 81885908-71d6-4178-9844-0b960af53eda d1b3422691730cf4c8f8bc9f946cfd79 {"aliquot_tag": "ALQ_e8fed612", "sample": "S35", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.miRNA-Seq.S4_L005_R1.A C3N-03849 HNSCC miRNA-Seq tissue_normal CPT0237150006 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L005_R1_001.unaln.bam 313388072 BAM S4_L005_R1 submitted_unaligned CPTAC3 56aa044e-d0f9-4272-a8d4-40643da19a36 eec51364fd3a0d9213b05cc462155b18 {"aliquot_tag": "ALQ_97c6b7c6", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.miRNA-Seq.T.hg38 C3N-03849 HNSCC miRNA-Seq tumor CPT0237130010 dae74986-4350-4915-9e62-860604ac81f1_mirnaseq_gdc_realn.bam 232818892 BAM harmonized CPTAC3 dbb5f042-b814-4dc9-bc8d-1c4a17e6ec71 0ee757a4d4af70ac4de62f36c3a8beb4 {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.RNA-Seq.chimeric.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.chimeric.gdc_realn.bam 42250271 BAM chimeric harmonized CPTAC3 a83d2a31-9285-493f-8c8c-e57dcef53e5e 59afc138595dcf46ffbd33c3a2db159e {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.RNA-Seq.chimeric.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.chimeric.gdc_realn.bam 213785879 BAM chimeric harmonized CPTAC3 53e19a78-bbe5-418f-92b1-abccb59e5d35 46936f8a8cc36e1d91a727588d3e2dde {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.RNA-Seq.genomic.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.genomic.gdc_realn.bam 9031546935 BAM genomic harmonized CPTAC3 2a588b21-9c01-4f75-b05d-137750b44c79 9edb73100bbd75dcfc885d21175942a9 {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.RNA-Seq.genomic.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.genomic.gdc_realn.bam 8379285734 BAM genomic harmonized CPTAC3 4d9c5be3-cd3e-47d3-9632-8a98ff7547df e34b677370843efad45fcd0e961957d8 {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.RNA-Seq.S16_L003_R1.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R1_001.fastq.gz 4146821128 FASTQ S16_L003_R1 submitted_unaligned CPTAC3 5deac991-e30d-46e4-a1e2-3c542e1724c1 ab71711d7822b19be0dd8b018bf6c0ae {"aliquot_tag": "ALQ_97c6b7c6", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.RNA-Seq.S16_L003_R2.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R2_001.fastq.gz 4496258668 FASTQ S16_L003_R2 submitted_unaligned CPTAC3 dbe529ee-d8de-42b6-9706-0281444c1e06 055ec52e8ac283106ad583a1fa55b76a {"aliquot_tag": "ALQ_97c6b7c6", "sample": "S16", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.RNA-Seq.S8_L002_R1.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3824969966 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 9d031428-fca4-4514-a8ed-12e452afb4d3 5abe4f9e2f04887131e22aacc3e6db0a {"aliquot_tag": "ALQ_e8fed612", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.RNA-Seq.S8_L002_R2.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4423454652 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 2f645ebf-aff3-4e1e-a0cf-46cc3430bc65 09b5796dd65a19fa6b1e1a8fd6dc5ca7 {"aliquot_tag": "ALQ_e8fed612", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.RNA-Seq.transcriptome.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.transcriptome.gdc_realn.bam 11948208244 BAM transcriptome harmonized CPTAC3 8362d3fe-2435-4be0-b702-7b88c75bfea9 51acfde8e54a2ea75cf1c670c9b1549e {"aliquot_tag": "ALQ_97c6b7c6", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.RNA-Seq.transcriptome.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.transcriptome.gdc_realn.bam 10671266014 BAM transcriptome harmonized CPTAC3 adcace2f-32ad-4f6a-aab8-c4bb9f12649d 2dcec49c2603166caaaa00a142b40f95 {"aliquot_tag": "ALQ_e8fed612", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.WGS.N C3N-03849 HNSCC WGS blood_normal CPT0237190002 CPT0237190002.WholeGenome.RP-1303.bam 66545871731 BAM submitted_aligned CPTAC3 f69cc680-c556-48e1-9cf9-290c437ee504 cf3a9c488a5af4bbf2d44ef3d9cccc56 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03849.WGS.N.hg38 C3N-03849 HNSCC WGS blood_normal CPT0237190002 42a540a5-7464-4132-81f2-fe99cf58a436_wgs_gdc_realn.bam 98292420883 BAM harmonized CPTAC3 9e7c44a1-8516-4b2b-86d5-43069de82b91 8bdbd33f8a3ccddb92d80557bd5e17b3 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03849.WGS.T C3N-03849 HNSCC WGS tumor CPT0237130007 CPT0237130007.WholeGenome.RP-1303.bam 65537002477 BAM submitted_aligned CPTAC3 25d16b23-28ba-4740-82c9-29e8e2bd4ddc 08366fdd2ea992bbbbd1db9073e35de5 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.WGS.T.hg38 C3N-03849 HNSCC WGS tumor CPT0237130007 58d317f1-0935-498a-8d5f-b16499308ab4_wgs_gdc_realn.bam 96230027435 BAM harmonized CPTAC3 0d4ba94c-58a3-4af7-8b4a-fe8435186789 679477ee0f3c40fe9edbca5ff188e902 {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.WXS.A C3N-03849 HNSCC WXS tissue_normal CPT0237150009 CPT0237150009.WholeExome.RP-1303.bam 39399338313 BAM submitted_aligned CPTAC3 b8618a25-6307-49b6-a732-e0d599208061 d0e1127ddd79065e256c8ccd1384de6f {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.WXS.A.hg38 C3N-03849 HNSCC WXS tissue_normal CPT0237150009 de14e426-d604-400f-bacb-e5f583fe684b_wxs_gdc_realn.bam 54998307848 BAM harmonized CPTAC3 47bbea88-e5fd-4fe4-a4a8-117416d6c07a 2919697dd9925f3c96651f64100f14d3 {"aliquot_tag": "ALQ_779aa57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03849.WXS.N C3N-03849 HNSCC WXS blood_normal CPT0237190002 CPT0237190002.WholeExome.RP-1303.bam 25276415156 BAM submitted_aligned CPTAC3 b74c72b3-db46-4c87-83c6-ca1cbe9e3bf7 3db4ee4e5a94e6ca64216abc776890c6 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03849.WXS.N.hg38 C3N-03849 HNSCC WXS blood_normal CPT0237190002 42a540a5-7464-4132-81f2-fe99cf58a436_wxs_gdc_realn.bam 33829969585 BAM harmonized CPTAC3 3fc0e634-aead-4cca-8c4a-fbc57321efc2 20638b35bafbd3b01aa57349d3484223 {"aliquot_tag": "ALQ_555b9ede", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03849.WXS.T C3N-03849 HNSCC WXS tumor CPT0237130007 CPT0237130007.WholeExome.RP-1303.bam 23225826309 BAM submitted_aligned CPTAC3 fa63e93d-da4d-4890-b663-67e47d3a4f05 ad6ba37e69a0a1387466dbfe73ddd27b {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03849.WXS.T.hg38 C3N-03849 HNSCC WXS tumor CPT0237130007 58d317f1-0935-498a-8d5f-b16499308ab4_wxs_gdc_realn.bam 32296730964 BAM harmonized CPTAC3 130912fb-80ca-42cd-bd76-284e3c843ea1 a848fc57204e62b68dcdb46dc67e5eab {"aliquot_tag": "ALQ_6f8172f0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.MethArray.Green.T C3N-03851 LSCC Methylation_Array tumor CPT0237200007 203219650174_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3ae9766d-9ff0-4a0e-a174-9e340997fa39 5e820c310866c7d8d9c8e2ff7f683c06 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.MethArray.Red.T C3N-03851 LSCC Methylation_Array tumor CPT0237200007 203219650174_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 04bce6ab-3e79-4b38-b5c2-1dd685703994 68d564a54699453ab5e9039234418fc9 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.miRNA-Seq.A.hg38 C3N-03851 LSCC miRNA-Seq tissue_normal CPT0237210006 112bb6d8-81f4-43e4-9cd0-7a9b3ef2d0d0_mirnaseq_gdc_realn.bam 283297453 BAM harmonized CPTAC3 eccf87eb-c335-459e-a3ad-348687c16239 b0fbbb4034abf75c102178f7f95ee350 {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03851.miRNA-Seq.S158_L007_R1.T C3N-03851 LSCC miRNA-Seq tumor CPT0237200010 190828_UNC32-K00270_0200_BH7GVJBBXY_GATCAG_S158_L007_R1_001.unaln.bam 288179780 BAM S158_L007_R1 submitted_unaligned CPTAC3 c63e9d20-5f5a-470d-be5d-f4e23c8888d4 9415edff010ec225220115bc0b8ccea2 {"aliquot_tag": "ALQ_29cade6c", "sample": "S158", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.miRNA-Seq.S21_L005_R1.A C3N-03851 LSCC miRNA-Seq tissue_normal CPT0237210006 190206_UNC31-K00269_0191_AH2WY5BBXY_CACCGG_S21_L005_R1_001.unaln.bam 255744738 BAM S21_L005_R1 submitted_unaligned CPTAC3 6578a154-95bd-48c1-8235-ec3b8744ac11 faaf9b5da004c81078d29892378624e8 {"aliquot_tag": "ALQ_e4d263a8", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03851.miRNA-Seq.T.hg38 C3N-03851 LSCC miRNA-Seq tumor CPT0237200010 71a324d9-03cf-44ec-b32f-3ea5c211370c_mirnaseq_gdc_realn.bam 312783754 BAM harmonized CPTAC3 2cb77047-c3f4-45f7-984a-4311a819ec57 fa4f3ffb392cbccefa5ae3051f014441 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.RNA-Seq.chimeric.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.chimeric.gdc_realn.bam 296163808 BAM chimeric harmonized CPTAC3 87af9b8e-e26b-43e7-9079-a268d51758c3 90f1de4780efdd0c1aba7ac41d910239 {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03851.RNA-Seq.chimeric.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.chimeric.gdc_realn.bam 127426417 BAM chimeric harmonized CPTAC3 5add4b32-8cb2-4f28-a713-a8babe82eef3 f3a40b715fb8faf61e9ad38453592816 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.RNA-Seq.genomic.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.genomic.gdc_realn.bam 9077719472 BAM genomic harmonized CPTAC3 f7773471-3f8b-40df-8f56-b9a1c92320ad 24b923bf12dd011ad314e8e235d162c7 {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03851.RNA-Seq.genomic.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.genomic.gdc_realn.bam 8105698646 BAM genomic harmonized CPTAC3 4d0ad8f7-c23d-4148-b11e-46fcdf5a8221 ff529b8819fccc7497cf48a8832b0a56 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.RNA-Seq.S22_L006_R1.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 4216508872 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 be70d456-8e6f-446b-b4cd-0c017301a18a dcadbbc087c9981d3ad4837124bc667d {"aliquot_tag": "ALQ_e4d263a8", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03851.RNA-Seq.S22_L006_R2.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 4724113570 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 f46106ca-b640-4caa-ae6a-633020d2cb97 a746a4d23ca1e2906fbd85fcedf4f88f {"aliquot_tag": "ALQ_e4d263a8", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03851.RNA-Seq.S3_L001_R1.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3646899211 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 093e9037-e025-4003-aef6-63b023192ac8 1ce8676996b6da9b43676688a5a68b3f {"aliquot_tag": "ALQ_29cade6c", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.RNA-Seq.S3_L001_R2.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R2_001.fastq.gz 4079259403 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 c2a93566-f7c3-40ae-acfc-8a164752cfe2 6ac5bc12cbf691e975d3c21d5c4e9c0b {"aliquot_tag": "ALQ_29cade6c", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.RNA-Seq.transcriptome.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.transcriptome.gdc_realn.bam 10985805435 BAM transcriptome harmonized CPTAC3 e62befa0-cb04-4d7c-8e6a-d724ead1e935 291f8b9a8b30d3612c704651eb08fa8f {"aliquot_tag": "ALQ_e4d263a8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03851.RNA-Seq.transcriptome.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.transcriptome.gdc_realn.bam 9746416279 BAM transcriptome harmonized CPTAC3 5876bc9a-c278-4615-92f7-5177b0a8ed9f 4b34958eb9a0bec9ba0ce56ac26ed680 {"aliquot_tag": "ALQ_29cade6c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.WGS.N C3N-03851 LSCC WGS blood_normal CPT0237260002 CPT0237260002.WholeGenome.RP-1303.bam 61953955529 BAM submitted_aligned CPTAC3 f0dd829c-f73f-49b4-a623-e64d63653083 4bf5611b8b9aab1717329fbd4dbf6dcc {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03851.WGS.N.hg38 C3N-03851 LSCC WGS blood_normal CPT0237260002 07144067-5157-4e9c-87e6-ae39734624f8_wgs_gdc_realn.bam 89830831900 BAM harmonized CPTAC3 36b8ae23-85fa-4963-9019-c14b2f668b7a 143854598b1d594c32efcf234f6b1167 {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03851.WGS.T C3N-03851 LSCC WGS tumor CPT0237200007 CPT0237200007.WholeGenome.RP-1303.bam 61427999147 BAM submitted_aligned CPTAC3 38811e7a-8acc-441a-aa45-01d2c01df137 5fcce163be39b9c153da1157e13fe480 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.WGS.T.hg38 C3N-03851 LSCC WGS tumor CPT0237200007 3b453860-03bc-4bb3-a378-8bc60b00762e_wgs_gdc_realn.bam 88782837411 BAM harmonized CPTAC3 defc1632-1616-47aa-a6a3-2b94efaca2e2 941570b00d8bab26dbc6165e04c8b08f {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.WXS.N C3N-03851 LSCC WXS blood_normal CPT0237260002 CPT0237260002.WholeExome.RP-1303.bam 28212537532 BAM submitted_aligned CPTAC3 f316a876-0e18-4d7b-b605-2eece99fceba 4438d663c1d2591ab0d9eea6e42c3e81 {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03851.WXS.N.hg38 C3N-03851 LSCC WXS blood_normal CPT0237260002 07144067-5157-4e9c-87e6-ae39734624f8_wxs_gdc_realn.bam 38018586011 BAM harmonized CPTAC3 dda7b1f9-a55e-43ba-b623-90c93682d34b d222019848d1252b63ea6a97304c5e99 {"aliquot_tag": "ALQ_519f7ba1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03851.WXS.T C3N-03851 LSCC WXS tumor CPT0237200007 CPT0237200007.WholeExome.RP-1303.bam 24661546855 BAM submitted_aligned CPTAC3 37e6014b-acec-4eb5-aefd-8d57d6eb5a87 c0de748033466498dfc00e9531f73901 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03851.WXS.T.hg38 C3N-03851 LSCC WXS tumor CPT0237200007 3b453860-03bc-4bb3-a378-8bc60b00762e_wxs_gdc_realn.bam 33645444082 BAM harmonized CPTAC3 de2864f8-6816-4c21-a229-66b0b339ee38 034b82629dcb47ffbd71f5a7dba0aae6 {"aliquot_tag": "ALQ_aeb57a8e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.MethArray.Green.T C3N-03853 PDA Methylation_Array tumor CPT0237270011 203561620132_R01C01_Grn.idat 13676211 IDAT Green NA CPTAC3 2d64f287-3064-45af-a9fb-8b17cea07869 5689a426688b4251175b2415cace8dab {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.MethArray.Red.T C3N-03853 PDA Methylation_Array tumor CPT0237270011 203561620132_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 5ff4bca8-690b-47a4-8fa2-89b15d537170 05483f62e1607651c93797f14319d682 {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.miRNA-Seq.S4_L004_R1.T C3N-03853 PDA miRNA-Seq tumor CPT0237270008 190712_UNC32-K00270_0192_BH7HL3BBXY_CAAAAG_S4_L004_R1_001.unaln.bam 175892230 BAM S4_L004_R1 submitted_unaligned CPTAC3 5e030674-df69-46bf-bb40-0625bd852b7d 43bc750d3985f221a93e72863c8242e0 {"aliquot_tag": "ALQ_8c2abb0f", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.miRNA-Seq.T.hg38 C3N-03853 PDA miRNA-Seq tumor CPT0237270008 b4aa1028-91f8-4791-a666-711da8f22bf7_mirnaseq_gdc_realn.bam 196908814 BAM harmonized CPTAC3 3e20566f-3938-45e7-8677-69b23abf5ca0 33a7a1cb8ff9a4238f7ee15469a95d34 {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.RNA-Seq.chimeric.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.chimeric.gdc_realn.bam 25056443 BAM chimeric harmonized CPTAC3 afd6bd07-959c-490f-b1ee-836ff541667c e326cd40b6b556d0403e18303232f83a {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.RNA-Seq.genomic.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.genomic.gdc_realn.bam 6329248607 BAM genomic harmonized CPTAC3 f6bfea9a-236c-4c86-b4a9-fb81dd46ae47 a0079b1e27028eab65c04cab7d2c1697 {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.RNA-Seq.S5_L002_R1.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R1_001.fastq.gz 2916729014 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 54598abb-f151-46c9-bbcd-83996abfbff9 f4d648826df99e7e8f4e7aa531a1edce {"aliquot_tag": "ALQ_8c2abb0f", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.RNA-Seq.S5_L002_R2.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R2_001.fastq.gz 3187026718 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 8fa2a977-6346-4929-b0ac-7dec7a2c6c85 404132c89161bfb036c9d190446c7118 {"aliquot_tag": "ALQ_8c2abb0f", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.RNA-Seq.transcriptome.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.transcriptome.gdc_realn.bam 7684355976 BAM transcriptome harmonized CPTAC3 41f69ac7-ca2c-4e9b-ad7a-4f3ea62d6858 acde885d90d39bd02c23f3c304cdee57 {"aliquot_tag": "ALQ_8c2abb0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.WGS.N C3N-03853 PDA WGS blood_normal CPT0237330002 CPT0237330002.WholeGenome.RP-1303.bam 68719328743 BAM submitted_aligned CPTAC3 23766041-2920-4634-ba6e-d757023e6a31 eb65d55161445c515e49b5b3bbfadbfc {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03853.WGS.N.hg38 C3N-03853 PDA WGS blood_normal CPT0237330002 d9f1ee6b-0467-460b-b46d-ccd105ebb600_wgs_gdc_realn.bam 100567856315 BAM harmonized CPTAC3 f303165c-97a2-41a3-9c6c-b8f1478dab75 7a029d03aab90f8b3d9b5f776478f8d3 {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03853.WGS.T C3N-03853 PDA WGS tumor CPT0237270011 CPT0237270011.WholeGenome.RP-1303.bam 133390326110 BAM submitted_aligned CPTAC3 65a9897f-012d-40dd-b129-cd94ad80cabe 24fb203daec20f4d57248cd384fb082f {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.WGS.T.hg38 C3N-03853 PDA WGS tumor CPT0237270011 03484d73-88a2-4b7d-974a-cca90dc31ce4_wgs_gdc_realn.bam 197407346114 BAM harmonized CPTAC3 adef148b-80f0-45d9-be9a-4740003847b2 8c6ca68de35b1e73b12858dd59b93d67 {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.WXS.N C3N-03853 PDA WXS blood_normal CPT0237330002 CPT0237330002.WholeExome.RP-1303.bam 28086820754 BAM submitted_aligned CPTAC3 6e3382cc-85c3-4226-b781-1f40e7609d2c 1c2b84192c5eacdcbd416f0087293572 {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03853.WXS.N.hg38 C3N-03853 PDA WXS blood_normal CPT0237330002 d9f1ee6b-0467-460b-b46d-ccd105ebb600_wxs_gdc_realn.bam 38423127232 BAM harmonized CPTAC3 431eebd6-1422-4516-ac4c-78eb6cf7c7f3 5bc79d30d15a7f1d13f159b77e93ce01 {"aliquot_tag": "ALQ_52232774", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03853.WXS.T C3N-03853 PDA WXS tumor CPT0237270011 CPT0237270011.WholeExome.RP-1303.bam 49355811561 BAM submitted_aligned CPTAC3 171c77fc-b033-4478-a5f4-b294c8557a68 691d3b424370aa15f3da4709809c2cfb {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03853.WXS.T.hg38 C3N-03853 PDA WXS tumor CPT0237270011 03484d73-88a2-4b7d-974a-cca90dc31ce4_wxs_gdc_realn.bam 68278818410 BAM harmonized CPTAC3 0efb60fe-b2d8-479f-a6f7-82f8eae7c452 9fe822451b3f9d8f7fe5ddcd3fba845c {"aliquot_tag": "ALQ_eced32ea", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.MethArray.Green.A C3N-03875 LSCC Methylation_Array tissue_normal CPT0237430009 203219650065_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 146313fd-66c1-44d6-886f-4922aff12360 ad5f2c7d5cb257474b5bb80250b3f84b {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.MethArray.Green.T C3N-03875 LSCC Methylation_Array tumor CPT0237410007 203219670122_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 057d2bba-0876-4843-b5b9-8f382311a7a5 9ed448eaa39ac1338fda313630d6531d {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.MethArray.Red.A C3N-03875 LSCC Methylation_Array tissue_normal CPT0237430009 203219650065_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 8691dc46-c6f6-4378-a341-81df5f8bcf17 1afef193660a5f1a8b32c407da151bce {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.MethArray.Red.T C3N-03875 LSCC Methylation_Array tumor CPT0237410007 203219670122_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 009501c4-edac-4405-82f9-0b48a5a4436b 481b0dfe490dc9e69f16ca5fe929ef26 {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.miRNA-Seq.A.hg38 C3N-03875 LSCC miRNA-Seq tissue_normal CPT0237430006 083201ab-8898-4bc0-bd4b-734949c69745_mirnaseq_gdc_realn.bam 230465921 BAM harmonized CPTAC3 9fa0c889-0aaa-490d-b7fa-948a8e052e4a 33d1a0d7c8b81d1d98d3b121816cda0b {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.miRNA-Seq.S20_L005_R1.A C3N-03875 LSCC miRNA-Seq tissue_normal CPT0237430006 190206_UNC31-K00269_0191_AH2WY5BBXY_CACGAT_S20_L005_R1_001.unaln.bam 202110685 BAM S20_L005_R1 submitted_unaligned CPTAC3 94558c17-b113-4db9-8ba4-648d06aa6c85 e8f15038e6d291d158ebeedd052aeb37 {"aliquot_tag": "ALQ_484bd3d5", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.miRNA-Seq.S39_L004_R1.T C3N-03875 LSCC miRNA-Seq tumor CPT0237410010 190206_UNC31-K00269_0191_AH2WY5BBXY_TAGCTT_S39_L004_R1_001.unaln.bam 197395968 BAM S39_L004_R1 submitted_unaligned CPTAC3 cd2fb3db-f4b0-4a76-8b58-d5c8e6f95c4e 0171d93ebb5425cce6754bfd75d51a90 {"aliquot_tag": "ALQ_c2f314c1", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.miRNA-Seq.T.hg38 C3N-03875 LSCC miRNA-Seq tumor CPT0237410010 2f6cde2e-83c6-4a23-98cb-3c29d4ce27ee_mirnaseq_gdc_realn.bam 216958901 BAM harmonized CPTAC3 fed436ae-daff-4304-a460-5ef302d83c4e c190e0d67c4724a5bee7cf88d161c1e1 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.RNA-Seq.chimeric.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.chimeric.gdc_realn.bam 417408545 BAM chimeric harmonized CPTAC3 6ca93cf0-6f28-4436-9913-e50d70ed93dc c16500c06b9144058715f8903f3101e5 {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.RNA-Seq.chimeric.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.chimeric.gdc_realn.bam 239199837 BAM chimeric harmonized CPTAC3 a7e6a9b5-00b9-42a9-8c40-de6d82919b3b 5d31d2adeeab4302f11aeb13ac99d3e9 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.RNA-Seq.genomic.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.genomic.gdc_realn.bam 9183303739 BAM genomic harmonized CPTAC3 0dbec24c-7ac2-4b1d-876d-1db550ddcd19 0df69260248ecfd6b8252781fbb2d994 {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.RNA-Seq.genomic.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.genomic.gdc_realn.bam 9416029934 BAM genomic harmonized CPTAC3 05d88198-13f3-4124-8f16-b2cfbb10d216 a7cafe8a6fc668baf89e7488ff945c89 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.RNA-Seq.S21_L006_R1.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R1_001.fastq.gz 4159579810 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 8d00e1c4-c513-48f6-a19e-d87365f1f746 e7646f1d784ef3be98106f2fc6674957 {"aliquot_tag": "ALQ_484bd3d5", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.RNA-Seq.S21_L006_R2.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R2_001.fastq.gz 4677409539 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 2f211c5a-93f2-47e7-b29a-ba350245cabc 58e5c7877d1ab858ad983f02ddb2bb48 {"aliquot_tag": "ALQ_484bd3d5", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.RNA-Seq.S2_L001_R1.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 4410463611 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 85b882c0-75f5-48e0-9181-5bb320ef4a70 ef6ef1f182d8533bccde4517e245cc24 {"aliquot_tag": "ALQ_c2f314c1", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.RNA-Seq.S2_L001_R2.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4913417551 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 872b4b83-35e7-482c-8f05-c100b5a70785 d73eeef3a1ebe6bc358c4e29b31d5a6f {"aliquot_tag": "ALQ_c2f314c1", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.RNA-Seq.transcriptome.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.transcriptome.gdc_realn.bam 9152823260 BAM transcriptome harmonized CPTAC3 92b68f53-f87b-428a-9560-e42a2168cee1 c47616025b39151eab62809ef96802bd {"aliquot_tag": "ALQ_484bd3d5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.RNA-Seq.transcriptome.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.transcriptome.gdc_realn.bam 11736816056 BAM transcriptome harmonized CPTAC3 a62cab78-755e-48d4-8b59-288d71b4db3f 48a6f11eaadfeedce5cba9eb86a7b860 {"aliquot_tag": "ALQ_c2f314c1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.WGS.N C3N-03875 LSCC WGS blood_normal CPT0237470002 CPT0237470002.WholeGenome.RP-1303.bam 54198714257 BAM submitted_aligned CPTAC3 221b0d1a-3964-414d-9323-a8b2dfbbef96 a444d93357229b723195e00a86f2972b {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03875.WGS.N.hg38 C3N-03875 LSCC WGS blood_normal CPT0237470002 d29bdcdf-f368-41d2-91e9-5ea9f96224e0_wgs_gdc_realn.bam 78864452471 BAM harmonized CPTAC3 934b36e1-cf74-4fd1-b311-110d4eafc244 4afdc92263eb9c3b142233ce7f0ea262 {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03875.WGS.T C3N-03875 LSCC WGS tumor CPT0237410007 CPT0237410007.WholeGenome.RP-1303.bam 52869203339 BAM submitted_aligned CPTAC3 659ffb6a-4e16-42ac-a75f-357bcc755c33 9541fadb2393d20cf6275e10db0cf6ab {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.WGS.T.hg38 C3N-03875 LSCC WGS tumor CPT0237410007 c144c286-a208-4b0e-8a31-5b40c4c61906_wgs_gdc_realn.bam 77202884244 BAM harmonized CPTAC3 1c14972e-0168-4d6f-83c3-b4ab309992c1 b68616c3f642123959c66de43dd9d0ec {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.WXS.A C3N-03875 LSCC WXS tissue_normal CPT0237430009 CPT0237430009.WholeExome.RP-1303.bam 30222473466 BAM submitted_aligned CPTAC3 74731122-784d-48f8-b3b8-04acaeaa4314 def2295444fecd4cf4db61e403c7e9af {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.WXS.A.hg38 C3N-03875 LSCC WXS tissue_normal CPT0237430009 9bb4da0c-e6a3-4c1b-b6a8-448f102a04e7_wxs_gdc_realn.bam 41731459795 BAM harmonized CPTAC3 1057914a-4aaf-48c7-a947-807e128b942c a13f7cea883a5fed021ac8301e6ae539 {"aliquot_tag": "ALQ_d8f4ce44", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03875.WXS.N C3N-03875 LSCC WXS blood_normal CPT0237470002 CPT0237470002.WholeExome.RP-1303.bam 21724722804 BAM submitted_aligned CPTAC3 58199a8f-7811-4c14-9193-a0fbae3649d7 32cc9370a07d442132c004f2125c89f2 {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03875.WXS.N.hg38 C3N-03875 LSCC WXS blood_normal CPT0237470002 d29bdcdf-f368-41d2-91e9-5ea9f96224e0_wxs_gdc_realn.bam 29717035682 BAM harmonized CPTAC3 e9286352-bd5a-47c3-b3f9-7648e6429e07 4bd8e895a424715337bc637065b9e203 {"aliquot_tag": "ALQ_baa6b10c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03875.WXS.T C3N-03875 LSCC WXS tumor CPT0237410007 CPT0237410007.WholeExome.RP-1303.bam 28854354841 BAM submitted_aligned CPTAC3 cc67fdf5-f5ff-4403-89b3-58c1b1e4eef4 50438af2bfe27921528272296f461e5c {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03875.WXS.T.hg38 C3N-03875 LSCC WXS tumor CPT0237410007 c144c286-a208-4b0e-8a31-5b40c4c61906_wxs_gdc_realn.bam 40136656577 BAM harmonized CPTAC3 5a5835e8-553c-48d5-9320-0d9a0e9d03b0 c067fb903d21c14ff827dba4490c1e7c {"aliquot_tag": "ALQ_458cb023", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.MethArray.Green.T C3N-03876 HNSCC Methylation_Array tumor CPT0237480007 203220070154_R06C01_Grn.idat 13676207 IDAT Green NA CPTAC3 bbacf8fb-4162-40b0-a1ba-2ec7d98910e2 956b69206b732404e8fee2dc19dd03f3 {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.MethArray.Red.T C3N-03876 HNSCC Methylation_Array tumor CPT0237480007 203220070154_R06C01_Red.idat 13676207 IDAT Red NA CPTAC3 817fad27-8ae4-429d-9b7d-86096a5e7a8d 5f9148163bbd1398acf9bca347969bba {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.miRNA-Seq.A.hg38 C3N-03876 HNSCC miRNA-Seq tissue_normal CPT0237500006 1e423ff8-ec88-48f9-bc71-b6565e44796c_mirnaseq_gdc_realn.bam 241893338 BAM harmonized CPTAC3 1f6d737e-7ea3-4dd4-bfad-a78f01274158 ca664661c336b0305f3fa7e5f049b00b {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03876.miRNA-Seq.S32_L004_R1.T C3N-03876 HNSCC miRNA-Seq tumor CPT0237480010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L004_R1_001.unaln.bam 218913054 BAM S32_L004_R1 submitted_unaligned CPTAC3 e9350c3b-9d25-40a5-9745-c8880cf79c3c 1d286e52e215863b36d58ecc73daf35e {"aliquot_tag": "ALQ_cfe376b0", "sample": "S32", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.miRNA-Seq.S5_L005_R1.A C3N-03876 HNSCC miRNA-Seq tissue_normal CPT0237500006 190228_UNC32-K00270_0151_AHYLY3BBXX_ACAGTG_S5_L005_R1_001.unaln.bam 215905672 BAM S5_L005_R1 submitted_unaligned CPTAC3 04779cb8-d4f1-4b03-a5e9-0169801c8c39 2dc88a7c66661b2d8a656f33765f689b {"aliquot_tag": "ALQ_c4b77aa0", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03876.miRNA-Seq.T.hg38 C3N-03876 HNSCC miRNA-Seq tumor CPT0237480010 7f20e14b-6029-41ac-9b35-9b63a2e37966_mirnaseq_gdc_realn.bam 253452516 BAM harmonized CPTAC3 37a9df3b-f421-455e-9ba8-66e2a769dc85 822f0900378ea5eb232ccc2c7f3e677a {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.RNA-Seq.chimeric.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.chimeric.gdc_realn.bam 37765291 BAM chimeric harmonized CPTAC3 d92eb879-77c7-49f2-91a0-27952ea60404 5b21dad28778d02250dd7e1745980f9c {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03876.RNA-Seq.chimeric.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.chimeric.gdc_realn.bam 185234089 BAM chimeric harmonized CPTAC3 21b5f82f-8e32-4c13-92d5-176aea97c320 9c1aca35ad66931c86bf935398345f9a {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.RNA-Seq.genomic.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.genomic.gdc_realn.bam 7645174843 BAM genomic harmonized CPTAC3 3d43b4d6-0076-45eb-ac8f-31d00d2df2b7 54a3717bfb6df826a0f52942aba379ea {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03876.RNA-Seq.genomic.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.genomic.gdc_realn.bam 8869779246 BAM genomic harmonized CPTAC3 3b7110bf-5aa5-449f-8a93-35e0bd6046de 04dba564b425a5825051b7b053632eb1 {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.RNA-Seq.S12_L003_R1.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3978691428 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 875f49db-1e95-411e-85c9-d270f883ac7f 60871aa233d15db994a4ef53479eac6d {"aliquot_tag": "ALQ_cfe376b0", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.RNA-Seq.S12_L003_R2.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4490877642 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 eb1de813-8c68-4a16-8c75-b25aa51eaa31 922e5c8c84480164d66637a58cc03ef3 {"aliquot_tag": "ALQ_cfe376b0", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.RNA-Seq.S17_L004_R1.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R1_001.fastq.gz 3483156993 FASTQ S17_L004_R1 submitted_unaligned CPTAC3 45caa150-b63a-44f2-9a2e-008f0dc75a94 a347a0825a0b90fc8f2528bf6b64e4db {"aliquot_tag": "ALQ_c4b77aa0", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03876.RNA-Seq.S17_L004_R2.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R2_001.fastq.gz 3878085860 FASTQ S17_L004_R2 submitted_unaligned CPTAC3 cb3176ad-f36b-42e6-80d4-73cd73605177 f481108781df26f69e237fa59bc8338c {"aliquot_tag": "ALQ_c4b77aa0", "sample": "S17", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03876.RNA-Seq.transcriptome.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.transcriptome.gdc_realn.bam 9971679794 BAM transcriptome harmonized CPTAC3 30391703-9941-4718-bc05-e47bd55b2183 821638a8796935caacba13fcd7cf4894 {"aliquot_tag": "ALQ_c4b77aa0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03876.RNA-Seq.transcriptome.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.transcriptome.gdc_realn.bam 11971328567 BAM transcriptome harmonized CPTAC3 adfbf81d-502f-4ebb-ac1b-10f5d45e8f5b bf52bb9deae17bc76f88881e4c4a4216 {"aliquot_tag": "ALQ_cfe376b0", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.WGS.N C3N-03876 HNSCC WGS blood_normal CPT0237540002 CPT0237540002.WholeGenome.RP-1303.bam 62549034482 BAM submitted_aligned CPTAC3 fc20e056-a0e0-4e3a-9e58-1029bf5ea6cc c011700cc74d2b8bbe71d93b1a7093c7 {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03876.WGS.N.hg38 C3N-03876 HNSCC WGS blood_normal CPT0237540002 d3ac90d8-df39-473f-91a9-f212874fd4d9_wgs_gdc_realn.bam 89418751643 BAM harmonized CPTAC3 79e95feb-c35d-4032-a395-648687bf3cfc a2c8e709677aca459b7e6c58e3baa0ba {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03876.WGS.T C3N-03876 HNSCC WGS tumor CPT0237480007 CPT0237480007.WholeGenome.RP-1303.bam 74074136572 BAM submitted_aligned CPTAC3 540fafb1-0cb6-4657-9648-9ba034126a94 a815de8f525a451db3e4c314a439624e {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.WGS.T.hg38 C3N-03876 HNSCC WGS tumor CPT0237480007 f4e27722-8239-4840-8e12-5dbb5e87ac8c_wgs_gdc_realn.bam 106770635832 BAM harmonized CPTAC3 4b82d4f5-1a87-4fb9-9f4a-5a3157441f0d 2971e0aa5adbad793faf2849b95f95ca {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.WXS.N C3N-03876 HNSCC WXS blood_normal CPT0237540002 CPT0237540002.WholeExome.RP-1303.bam 43163383274 BAM submitted_aligned CPTAC3 c1d77084-619a-45e9-8be4-dffc39754314 d5af2f37e55a093682691f150723c8c1 {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03876.WXS.N.hg38 C3N-03876 HNSCC WXS blood_normal CPT0237540002 d3ac90d8-df39-473f-91a9-f212874fd4d9_wxs_gdc_realn.bam 59066869127 BAM harmonized CPTAC3 6623712d-5992-451c-8ec2-fc5680f76a44 7a33084f94a771467e7795fec4f8795b {"aliquot_tag": "ALQ_365a1879", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03876.WXS.T C3N-03876 HNSCC WXS tumor CPT0237480007 CPT0237480007.WholeExome.RP-1303.bam 39306743665 BAM submitted_aligned CPTAC3 606066ce-6a9b-4c5c-b974-03fe2063fd60 b511d1b719d0fbbb7560fcffac10f7aa {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03876.WXS.T.hg38 C3N-03876 HNSCC WXS tumor CPT0237480007 f4e27722-8239-4840-8e12-5dbb5e87ac8c_wxs_gdc_realn.bam 55251059264 BAM harmonized CPTAC3 d063c358-4974-4229-a39a-ebdaada285aa 8b34b84e91c0e3697c89cea04792b9f9 {"aliquot_tag": "ALQ_489cd252", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.MethArray.Green.A C3N-03877 LSCC Methylation_Array tissue_normal CPT0237570006 203220070100_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 c9a61fd4-ce3d-4f12-b9ef-471e86c14b24 1c828133ce64af7eb2f2e104f8b370a6 {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.MethArray.Green.T C3N-03877 LSCC Methylation_Array tumor CPT0237550010 203219720211_R07C01_Grn.idat 13676246 IDAT Green NA CPTAC3 22f69dc6-e246-4eae-b8fc-0215962ce664 e93ebe39702d8c87d30ca1b0d830df69 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.MethArray.Red.A C3N-03877 LSCC Methylation_Array tissue_normal CPT0237570006 203220070100_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 23a8a5a0-c80c-4ea6-b4cc-77a45ee3b09a b1d148e863ad319ddc967325e3dcb2b0 {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.MethArray.Red.T C3N-03877 LSCC Methylation_Array tumor CPT0237550010 203219720211_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 6b2f35f4-ce86-424e-9b6f-85bb0202e115 676a102787db760806a23ffaa1bb7fe3 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.miRNA-Seq.A.hg38 C3N-03877 LSCC miRNA-Seq tissue_normal CPT0237570009 e34c3e9c-75eb-4bc5-ad39-db0457ab7cae_mirnaseq_gdc_realn.bam 208714700 BAM harmonized CPTAC3 261e0ed8-6b3c-4b47-8a9a-8f00930f9ec1 0eb602f17652add65df8cfd7927148f2 {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.miRNA-Seq.S19_L005_R1.A C3N-03877 LSCC miRNA-Seq tissue_normal CPT0237570009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACTCA_S19_L005_R1_001.unaln.bam 187373885 BAM S19_L005_R1 submitted_unaligned CPTAC3 42fea238-f34f-4f3d-9476-4403d69ec8ff d976d4898703dd3ff4a09cd05516e953 {"aliquot_tag": "ALQ_e628bb21", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.miRNA-Seq.S5_L005_R1.T C3N-03877 LSCC miRNA-Seq tumor CPT0237550007 190206_UNC31-K00269_0191_AH2WY5BBXY_TCCCGA_S5_L005_R1_001.unaln.bam 166457054 BAM S5_L005_R1 submitted_unaligned CPTAC3 97145240-7461-4bdf-a124-4a6cf7c7bae9 07dbfa5d0df5e380b7563d09ead256cf {"aliquot_tag": "ALQ_7b50c546", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.miRNA-Seq.T.hg38 C3N-03877 LSCC miRNA-Seq tumor CPT0237550007 44d86c1c-172b-4194-b636-82c46523e015_mirnaseq_gdc_realn.bam 185926571 BAM harmonized CPTAC3 f84b7386-046d-45b2-ba2e-5f46dc16f9f8 3489be7f0be041bbd1d422ab54ff604b {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.RNA-Seq.chimeric.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.chimeric.gdc_realn.bam 224294823 BAM chimeric harmonized CPTAC3 87b077c2-d6f2-41e0-98ec-02baacf56971 0ca1fa6da39b5efdaea7f36ed2e0fc36 {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.RNA-Seq.chimeric.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.chimeric.gdc_realn.bam 187002611 BAM chimeric harmonized CPTAC3 647360bb-1d3f-4d0d-b5ed-c32de5f63045 8af538c7e0c9042e346f45b975d6f21d {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.RNA-Seq.genomic.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.genomic.gdc_realn.bam 9107443734 BAM genomic harmonized CPTAC3 21809ec3-4ae7-467a-ba6a-4b940fa04669 78e5045540b8cbf2222b6b45468aadbe {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.RNA-Seq.genomic.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.genomic.gdc_realn.bam 7628291978 BAM genomic harmonized CPTAC3 be040f8a-f805-4443-ae4e-883a54c5be64 69024d7bcbb1ef007092ad7c3da98c13 {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.RNA-Seq.S11_L003_R1.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R1_001.fastq.gz 3478384505 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 093f7f54-5358-45f0-820c-97a593a0c06e 59842dab18a5465fe87c3ce750d97afb {"aliquot_tag": "ALQ_7b50c546", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.RNA-Seq.S11_L003_R2.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R2_001.fastq.gz 3807066291 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 f25e0ad3-ac3f-44d1-8276-5cd0a0ee5770 54c0a7f9a8b85fc897d88f6bc0ef1e93 {"aliquot_tag": "ALQ_7b50c546", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.RNA-Seq.S24_L006_R1.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 4122614708 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 977ecbfb-a56f-4580-abf5-674a53a184b4 3352a8ce27f1541ab02b1ca75d9e0e0d {"aliquot_tag": "ALQ_e628bb21", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.RNA-Seq.S24_L006_R2.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 4580895911 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 39478aaa-3dc2-4a0f-b836-c263c85995df 309553994d8c231833147011a2218ed3 {"aliquot_tag": "ALQ_e628bb21", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.RNA-Seq.transcriptome.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.transcriptome.gdc_realn.bam 10449994110 BAM transcriptome harmonized CPTAC3 9ed07303-a0e7-4fa0-8876-3e428a121a91 042108aa96dcc29800fa7973cda5916e {"aliquot_tag": "ALQ_e628bb21", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.RNA-Seq.transcriptome.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.transcriptome.gdc_realn.bam 8270131608 BAM transcriptome harmonized CPTAC3 a052a090-9ab2-4ea8-88ff-73e5bcae435b 5a90c1254a181d27a9c55ab394601065 {"aliquot_tag": "ALQ_7b50c546", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.WGS.N C3N-03877 LSCC WGS blood_normal CPT0237610002 CPT0237610002.WholeGenome.RP-1303.bam 55048526954 BAM submitted_aligned CPTAC3 375ccf0d-8064-429e-8a6d-e000f9df40e6 ab1fe89ade56757fe2813505b4625430 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03877.WGS.N.hg38 C3N-03877 LSCC WGS blood_normal CPT0237610002 32d6f5b7-d2af-405b-9e18-3d437fbcfeab_wgs_gdc_realn.bam 80948441806 BAM harmonized CPTAC3 9ad14321-de83-441c-aff2-20b320e00aac bc68436e2448017d0f166485f7f55c04 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03877.WGS.T C3N-03877 LSCC WGS tumor CPT0237550010 CPT0237550010.WholeGenome.RP-1303.bam 66860096568 BAM submitted_aligned CPTAC3 05b6063c-5178-48fe-b027-79460aadb69d 2fe3efc2d28b75e779b4529a7b826d7a {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.WGS.T.hg38 C3N-03877 LSCC WGS tumor CPT0237550010 2603d898-8eb1-4f1d-93cb-c401918fb57f_wgs_gdc_realn.bam 98401442349 BAM harmonized CPTAC3 27f4794e-fdd1-47d1-9052-0aac0c9e7600 bdf116dbf0d12cea903e409763de6ed4 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.WXS.A C3N-03877 LSCC WXS tissue_normal CPT0237570006 CPT0237570006.WholeExome.RP-1303.bam 21338041331 BAM submitted_aligned CPTAC3 39025e4b-66d8-44bc-9746-c6a3b3b7a21b 76de77f3204c64587ab8ede027d35fed {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.WXS.A.hg38 C3N-03877 LSCC WXS tissue_normal CPT0237570006 03a3f131-9f6c-402c-b73d-c8b4c5ff8dfc_wxs_gdc_realn.bam 29011937773 BAM harmonized CPTAC3 f6e520b8-aac0-458d-98a4-44589f11cd6e d735869e9961a24d4886ce4e4c219b79 {"aliquot_tag": "ALQ_7697a6b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03877.WXS.N C3N-03877 LSCC WXS blood_normal CPT0237610002 CPT0237610002.WholeExome.RP-1303.bam 23191379894 BAM submitted_aligned CPTAC3 6892d4e6-a9d0-42e9-8bf5-fd6cbdb320fc 2a7a4121581501ef7241ec226173e1b5 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03877.WXS.N.hg38 C3N-03877 LSCC WXS blood_normal CPT0237610002 32d6f5b7-d2af-405b-9e18-3d437fbcfeab_wxs_gdc_realn.bam 32159243668 BAM harmonized CPTAC3 a066d294-d257-42c8-b5da-bf96ba7a62f0 4a9611ac546e1153781b91a1a59c8b91 {"aliquot_tag": "ALQ_782ee5a7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03877.WXS.T C3N-03877 LSCC WXS tumor CPT0237550010 CPT0237550010.WholeExome.RP-1303.bam 24451871864 BAM submitted_aligned CPTAC3 1ce5eda9-f219-4b88-9c54-6eb151bc2237 431e23b21bf2aff124d81c0792f4d282 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03877.WXS.T.hg38 C3N-03877 LSCC WXS tumor CPT0237550010 2603d898-8eb1-4f1d-93cb-c401918fb57f_wxs_gdc_realn.bam 33579821368 BAM harmonized CPTAC3 fb9196cc-1d50-4e6f-8c45-3abfd162a591 33d33d4d50c4beda443fbd32c9c5c984 {"aliquot_tag": "ALQ_fc2f61a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.MethArray.Green.A C3N-03878 HNSCC Methylation_Array tissue_normal CPT0237640006 203271740119_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 64a28c99-767d-45b7-b6d3-0400c34b034f 543219e9ca13485d14e6119dd87df219 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.MethArray.Green.T C3N-03878 HNSCC Methylation_Array tumor CPT0237620010 203281980233_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d1e1481a-fd5a-4845-b78f-5c460a383ae8 246236959a0cc3d432468f99cc874155 {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.MethArray.Red.A C3N-03878 HNSCC Methylation_Array tissue_normal CPT0237640006 203271740119_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 a132dc95-6464-45a0-90b1-3c66d0bb7f67 d353291d3812c6366d8077b04bdb7697 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.MethArray.Red.T C3N-03878 HNSCC Methylation_Array tumor CPT0237620010 203281980233_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 c54ce562-b94c-4681-ac61-3b62ea24a21f f1a2e606b4cfecc8bab2e99ba15c8f7b {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.miRNA-Seq.A.hg38 C3N-03878 HNSCC miRNA-Seq tissue_normal CPT0237640009 cc748554-7df4-4ad4-860d-ad8151e19c74_mirnaseq_gdc_realn.bam 352465210 BAM harmonized CPTAC3 52e1daba-50f9-4c33-8da4-377ca559cb98 95313ca39c4978c5d3868e1d4281898a {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.miRNA-Seq.S15_L005_R1.T C3N-03878 HNSCC miRNA-Seq tumor CPT0237620007 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGTCA_S15_L005_R1_001.unaln.bam 230608774 BAM S15_L005_R1 submitted_unaligned CPTAC3 e984eaf2-8d08-494d-a26a-2170dd84abe5 d26e45a3db207db51feec711c19aa89b {"aliquot_tag": "ALQ_4fe46bf8", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.miRNA-Seq.S6_L005_R1.A C3N-03878 HNSCC miRNA-Seq tissue_normal CPT0237640009 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L005_R1_001.unaln.bam 319324126 BAM S6_L005_R1 submitted_unaligned CPTAC3 55511cbb-5522-4f08-9218-9b2a46778bb6 d28c919e06c72c1e91b5ec7b2be8182d {"aliquot_tag": "ALQ_271cb35f", "sample": "S6", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.miRNA-Seq.T.hg38 C3N-03878 HNSCC miRNA-Seq tumor CPT0237620007 77a1cbe7-ceb9-4243-b0e4-7ee77d10c0da_mirnaseq_gdc_realn.bam 250538576 BAM harmonized CPTAC3 4b88292a-f150-46b9-ad54-6888f9b6cc18 d09d7731f60123ea44604c6c650ed93f {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.RNA-Seq.chimeric.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.chimeric.gdc_realn.bam 77070435 BAM chimeric harmonized CPTAC3 bc8a3791-f95c-415a-a061-2e4028d5feef 672bc4fef5cb1ac7a8a5165e1ff73b0a {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.RNA-Seq.chimeric.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.chimeric.gdc_realn.bam 34128239 BAM chimeric harmonized CPTAC3 810fb1fb-ac3e-450f-a3db-c106be7ab81b 0942be39b763d9611e0269b902c61bc7 {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.RNA-Seq.genomic.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.genomic.gdc_realn.bam 9595053815 BAM genomic harmonized CPTAC3 d8cc17c2-8cc0-4388-bdb3-589e355f4101 bb171f007a693e76f4de533bd89f8f42 {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.RNA-Seq.genomic.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.genomic.gdc_realn.bam 8212561737 BAM genomic harmonized CPTAC3 3b989ae7-bb31-48fc-97cc-b36edd9c59d3 1815bace9d05cb2dcd13563b2c922755 {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.RNA-Seq.S18_L004_R1.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R1_001.fastq.gz 4526848324 FASTQ S18_L004_R1 submitted_unaligned CPTAC3 b394fa19-bdfc-4dd9-a1a7-2b877e8d1a5f 502f4851e787feaf96e26ac311003267 {"aliquot_tag": "ALQ_271cb35f", "sample": "S18", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.RNA-Seq.S18_L004_R2.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R2_001.fastq.gz 5042659351 FASTQ S18_L004_R2 submitted_unaligned CPTAC3 4994e721-129a-4b4a-a27b-74a77ca935d2 ce30720727d157b0490a2340b6e08ba7 {"aliquot_tag": "ALQ_271cb35f", "sample": "S18", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.RNA-Seq.S25_L006_R1.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R1_001.fastq.gz 3836135291 FASTQ S25_L006_R1 submitted_unaligned CPTAC3 f567f329-24f9-4d8d-a487-2ff897ce1832 a7863102a61f0245bf0ca23aa45a9c5d {"aliquot_tag": "ALQ_4fe46bf8", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.RNA-Seq.S25_L006_R2.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R2_001.fastq.gz 3966219637 FASTQ S25_L006_R2 submitted_unaligned CPTAC3 120b2b07-94b3-453c-be52-a28ea49bcafc 80c7fd154d85a34503e64e5527ce77aa {"aliquot_tag": "ALQ_4fe46bf8", "sample": "S25", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.RNA-Seq.transcriptome.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.transcriptome.gdc_realn.bam 12932520499 BAM transcriptome harmonized CPTAC3 90de5d0e-e75b-4754-8274-b28c810a586a 102c3ad6c6fa19b6d468ade9f2bd0e27 {"aliquot_tag": "ALQ_271cb35f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.RNA-Seq.transcriptome.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.transcriptome.gdc_realn.bam 9903156816 BAM transcriptome harmonized CPTAC3 84d10225-1516-4d2a-83e5-a3da37cdb5b6 644dfdf836bcbb3e74a23393de011eb9 {"aliquot_tag": "ALQ_4fe46bf8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.WGS.N C3N-03878 HNSCC WGS blood_normal CPT0237680002 CPT0237680002.WholeGenome.RP-1303.bam 83684450921 BAM submitted_aligned CPTAC3 1853b5bd-cc1e-466a-8cbb-ad11f2b8008e fb3b466a87a97a8c2a97e7378c37bdd1 {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03878.WGS.N.hg38 C3N-03878 HNSCC WGS blood_normal CPT0237680002 5a965a42-f61f-4e27-81b4-d4ecd3e067b4_wgs_gdc_realn.bam 122543644771 BAM harmonized CPTAC3 e48d1101-0622-4b77-95ea-97430b2c5459 0cc093ecc117698366574398a05a5b53 {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03878.WGS.T C3N-03878 HNSCC WGS tumor CPT0237620010 CPT0237620010.WholeGenome.RP-1303.bam 78130465028 BAM submitted_aligned CPTAC3 392f0173-d81e-45e0-91a9-27bbd1c83573 d32d9e96eeb99c8a8f554f837591df2e {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.WGS.T.hg38 C3N-03878 HNSCC WGS tumor CPT0237620010 0533759f-76d9-4397-b4c1-adf72f1b694e_wgs_gdc_realn.bam 114607417133 BAM harmonized CPTAC3 2de809c0-a130-4a4e-a81d-f2b880c66d77 c51fe2933529230b18977e20a51f17e9 {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.WXS.A C3N-03878 HNSCC WXS tissue_normal CPT0237640006 CPT0237640006.WholeExome.RP-1303.bam 21226387589 BAM submitted_aligned CPTAC3 13baf039-f1e9-4298-be9f-8d4c1bab8be6 b894548d52a6501acb7cb3112c7ea0d3 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.WXS.A.hg38 C3N-03878 HNSCC WXS tissue_normal CPT0237640006 b8298f75-f439-4845-ac6f-9706b4450047_wxs_gdc_realn.bam 29457606492 BAM harmonized CPTAC3 019c34df-cd91-4519-bbaf-6b101f39e929 313ee56887b69ed7ba1f1f9ca0595f76 {"aliquot_tag": "ALQ_b7a3aece", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03878.WXS.N C3N-03878 HNSCC WXS blood_normal CPT0237680002 CPT0237680002.WholeExome.RP-1303.bam 32025045286 BAM submitted_aligned CPTAC3 1db82b41-2ee9-4e4f-985e-61a21e3a4805 58415b17fda801326f294daa4521feca {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03878.WXS.N.hg38 C3N-03878 HNSCC WXS blood_normal CPT0237680002 5a965a42-f61f-4e27-81b4-d4ecd3e067b4_wxs_gdc_realn.bam 43181852165 BAM harmonized CPTAC3 6981637b-abe2-4415-a5f4-2b5f3ec4fb6d 407fd34901f22640ec494f5684cf148e {"aliquot_tag": "ALQ_753e87d6", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03878.WXS.T C3N-03878 HNSCC WXS tumor CPT0237620010 CPT0237620010.WholeExome.RP-1303.bam 39931072996 BAM submitted_aligned CPTAC3 4685e10e-c915-4b5d-ba91-bcdc6f7817dc 54fd45b4b1044948f9008bb11c08827e {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03878.WXS.T.hg38 C3N-03878 HNSCC WXS tumor CPT0237620010 0533759f-76d9-4397-b4c1-adf72f1b694e_wxs_gdc_realn.bam 54646639169 BAM harmonized CPTAC3 2b544939-e131-4a72-bc95-c70ad9dc3f53 b36aba1b8abc6175e4b96b7c39eb3d18 {"aliquot_tag": "ALQ_c89bcf1a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.MethArray.Green.A C3N-03880 LSCC Methylation_Array tissue_normal CPT0237710006 203219670141_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 27bd09ed-3106-411b-a5f7-bf5b56269a4b 802f76a9a313721beb2696a586247564 {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.MethArray.Green.T C3N-03880 LSCC Methylation_Array tumor CPT0237690007 203219670066_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 a73e598b-d714-42b8-8548-acebf41615fc 0d6c89772ae50c36024d37b984d9ab20 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.MethArray.Red.A C3N-03880 LSCC Methylation_Array tissue_normal CPT0237710006 203219670141_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 a7717640-2628-4316-b789-78d57c043322 b7729a479720266b383529a4e871193a {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.MethArray.Red.T C3N-03880 LSCC Methylation_Array tumor CPT0237690007 203219670066_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 e052db5d-4597-4b96-a026-721d0fd9508e decb62c30e5c2e5adf95615c209051e7 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.miRNA-Seq.A.hg38 C3N-03880 LSCC miRNA-Seq tissue_normal CPT0237710009 83465edf-0b84-4b6b-b2c2-492324ec2c4c_mirnaseq_gdc_realn.bam 242001195 BAM harmonized CPTAC3 039608b9-314e-4f7f-a9de-2c9fc03ce598 c204989e65d064ac656f1c83d3247acf {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.miRNA-Seq.S13_L005_R1.A C3N-03880 LSCC miRNA-Seq tissue_normal CPT0237710009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTAGCT_S13_L005_R1_001.unaln.bam 214012213 BAM S13_L005_R1 submitted_unaligned CPTAC3 2e694348-7378-479f-8d7b-4b517ef15688 22fda39ace94be1f556b5f51acaaf90d {"aliquot_tag": "ALQ_24a0ef8a", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.miRNA-Seq.S31_L004_R1.T C3N-03880 LSCC miRNA-Seq tumor CPT0237690010 190206_UNC31-K00269_0191_AH2WY5BBXY_GTCCGC_S31_L004_R1_001.unaln.bam 149007096 BAM S31_L004_R1 submitted_unaligned CPTAC3 2d353b88-75c9-468c-8f93-2684e34ba94b c7e799ad71d3f4607c55b3857e3be878 {"aliquot_tag": "ALQ_bf4bfe0b", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.miRNA-Seq.T.hg38 C3N-03880 LSCC miRNA-Seq tumor CPT0237690010 1b27161f-526e-4f0e-a65d-a010a1c3ffeb_mirnaseq_gdc_realn.bam 166456396 BAM harmonized CPTAC3 f0572e50-8b4a-49fa-8770-610b75b50e88 41f20d2d52405de3a3786dd578369f48 {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.RNA-Seq.chimeric.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.chimeric.gdc_realn.bam 167908367 BAM chimeric harmonized CPTAC3 3735407d-c9e9-4496-9a39-bbc86e2683b3 94954f411862bfba9f145e97952febe1 {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.RNA-Seq.chimeric.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.chimeric.gdc_realn.bam 222330521 BAM chimeric harmonized CPTAC3 0087e612-9de7-489b-9b54-225b2c78ba7d 02ada2fb7e5724a15b9b3374040d8c23 {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.RNA-Seq.genomic.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.genomic.gdc_realn.bam 8713045991 BAM genomic harmonized CPTAC3 0210d27f-d87c-41f4-a6c5-83afe2948cb0 c90a499b63289d526ee1b8d6464aea78 {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.RNA-Seq.genomic.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.genomic.gdc_realn.bam 9161723257 BAM genomic harmonized CPTAC3 94ad7b87-6da0-43b9-912e-2a72322c853f ea3d7171d96675ac82787661b391702b {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.RNA-Seq.S7_L002_R1.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R1_001.fastq.gz 4346690127 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 0d0eeb9c-9b8e-4a0b-be7f-131b97fa53b4 7102eae9849af5d6a88fe830750130e7 {"aliquot_tag": "ALQ_bf4bfe0b", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.RNA-Seq.S7_L002_R2.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R2_001.fastq.gz 4514924090 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 7ec5ed01-9084-4884-b9ba-7aeaa93957d2 2dbf186759601ace2a61a4eadd57a5de {"aliquot_tag": "ALQ_bf4bfe0b", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.RNA-Seq.S8_L008_R1.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R1_001.fastq.gz 4077191215 FASTQ S8_L008_R1 submitted_unaligned CPTAC3 971a92e1-7067-4c8f-ae62-b854cd51c737 23137f973ee0b62f4151c423c972ea24 {"aliquot_tag": "ALQ_24a0ef8a", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.RNA-Seq.S8_L008_R2.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R2_001.fastq.gz 4589515737 FASTQ S8_L008_R2 submitted_unaligned CPTAC3 94a02b67-3175-49c3-ab57-511580a3e972 158239d3c6bd3b7960ad0962509373cf {"aliquot_tag": "ALQ_24a0ef8a", "sample": "S8", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.RNA-Seq.transcriptome.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.transcriptome.gdc_realn.bam 10526166682 BAM transcriptome harmonized CPTAC3 b3b0ce53-fb38-41a1-b043-b7a62a8a1eda 885cb19b40beed1f9a816094f193125e {"aliquot_tag": "ALQ_24a0ef8a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.RNA-Seq.transcriptome.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.transcriptome.gdc_realn.bam 9975333425 BAM transcriptome harmonized CPTAC3 a5dd8c98-42aa-4270-ab4a-a15fb2ed5284 8eadb6a2ef465864235410534c63630f {"aliquot_tag": "ALQ_bf4bfe0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.WGS.N C3N-03880 LSCC WGS blood_normal CPT0237750002 CPT0237750002.WholeGenome.RP-1303.bam 55023818043 BAM submitted_aligned CPTAC3 6ea399f6-c6fe-411a-abc4-475195474297 13742542ddb1980ad7817b02f7772417 {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03880.WGS.N.hg38 C3N-03880 LSCC WGS blood_normal CPT0237750002 2b466dd6-459a-4dde-9411-28af3eaca5d5_wgs_gdc_realn.bam 80763851740 BAM harmonized CPTAC3 49dc856d-7979-4696-b132-020eb7d68cbb 1cb88e332414abf9cc7f001edd4a814e {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03880.WGS.T C3N-03880 LSCC WGS tumor CPT0237690007 CPT0237690007.WholeGenome.RP-1303.bam 53726213730 BAM submitted_aligned CPTAC3 d5ca9185-c46d-43a0-9bb4-caac1086efa4 8f9746350c502c87535ff23d421e5541 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.WGS.T.hg38 C3N-03880 LSCC WGS tumor CPT0237690007 95f547e8-33a3-489f-a890-bea3e46f4e7c_wgs_gdc_realn.bam 78681906049 BAM harmonized CPTAC3 254381d1-5844-4838-ac8b-b772d38b025b 2583971d49a2e050ea8f262bfe62c6e4 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.WXS.A C3N-03880 LSCC WXS tissue_normal CPT0237710006 CPT0237710006.WholeExome.RP-1303.bam 26326867013 BAM submitted_aligned CPTAC3 4908bf15-92be-4801-afa8-f6d66f42afa2 92245339c9aed6556d4a35b19e168a84 {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.WXS.A.hg38 C3N-03880 LSCC WXS tissue_normal CPT0237710006 d656f06f-8d9a-49ce-88b7-b27fa75340da_wxs_gdc_realn.bam 35512246009 BAM harmonized CPTAC3 ec8f57a2-7f97-4897-b29d-5c9c19348655 6184003600a687edf9c0cad36c8ca481 {"aliquot_tag": "ALQ_b41ff21b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03880.WXS.N C3N-03880 LSCC WXS blood_normal CPT0237750002 CPT0237750002.WholeExome.RP-1303.bam 27874601873 BAM submitted_aligned CPTAC3 c06b42b4-afe6-4721-9d64-6862c7ab57c6 fd82bd50652a8a899c45cf5e5bdad944 {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03880.WXS.N.hg38 C3N-03880 LSCC WXS blood_normal CPT0237750002 2b466dd6-459a-4dde-9411-28af3eaca5d5_wxs_gdc_realn.bam 37711480469 BAM harmonized CPTAC3 68f299b8-9efd-4ae6-af93-0e1151f8e4df eb01cdfd60e79de8f90708df93d1b581 {"aliquot_tag": "ALQ_46f290c2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03880.WXS.T C3N-03880 LSCC WXS tumor CPT0237690007 CPT0237690007.WholeExome.RP-1303.bam 26967598769 BAM submitted_aligned CPTAC3 6a7e0afd-1ea6-4eab-b5a0-21abf817b588 3f166837e1547216447a8bef7b232854 {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03880.WXS.T.hg38 C3N-03880 LSCC WXS tumor CPT0237690007 95f547e8-33a3-489f-a890-bea3e46f4e7c_wxs_gdc_realn.bam 37631702533 BAM harmonized CPTAC3 8edd9ee4-5970-42d7-9344-a229bb4ecc76 c7439316c656cb0afa3e94ba2bb1a4ea {"aliquot_tag": "ALQ_38345ae9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.MethArray.Green.A C3N-03882 LSCC Methylation_Array tissue_normal CPT0237780006 203220070100_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 2c40cdd3-f07c-4e5c-a462-abaf1c006ea4 2af82bd6960aee48a37f09412f197805 {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.MethArray.Green.T C3N-03882 LSCC Methylation_Array tumor CPT0237760006 203219640157_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 652773eb-98b4-44c4-be77-72381c3f5b35 1730203b444d0e3cb1948a5c11e4477d {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.MethArray.Red.A C3N-03882 LSCC Methylation_Array tissue_normal CPT0237780006 203220070100_R01C01_Red.idat 13676226 IDAT Red NA CPTAC3 0b4f1fec-7ea5-4038-b3d3-8a0d474c2781 1bc4f675ebaa54167fa3d03f4dd3a564 {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.MethArray.Red.T C3N-03882 LSCC Methylation_Array tumor CPT0237760006 203219640157_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 d5a93308-d4e6-47df-9807-495f9caba4f4 d836367de4d4d6037cb11ff380d426f1 {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.miRNA-Seq.A.hg38 C3N-03882 LSCC miRNA-Seq tissue_normal CPT0237780009 6db0d707-35a1-4925-8605-53f68a97d861_mirnaseq_gdc_realn.bam 239926432 BAM harmonized CPTAC3 223ac9f3-f2ab-4bed-a8a6-7b66266e0e80 73074ecf05d91ae7c84aa71616911187 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.miRNA-Seq.S12_L005_R1.A C3N-03882 LSCC miRNA-Seq tissue_normal CPT0237780009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L005_R1_001.unaln.bam 212318069 BAM S12_L005_R1 submitted_unaligned CPTAC3 c53ee6dd-6be3-4691-95e1-95ffbcdc2b21 c18c5be3e4c44a7ec007821ede400659 {"aliquot_tag": "ALQ_29b08dfb", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.miRNA-Seq.S37_L004_R1.T C3N-03882 LSCC miRNA-Seq tumor CPT0237760009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTTGTA_S37_L004_R1_001.unaln.bam 178242797 BAM S37_L004_R1 submitted_unaligned CPTAC3 b9c0499c-b174-41ab-ac0a-309cd5e35487 c2c60a0a008617ea4fee3f9e4ad64779 {"aliquot_tag": "ALQ_9680339a", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.miRNA-Seq.T.hg38 C3N-03882 LSCC miRNA-Seq tumor CPT0237760009 6e76c17d-c46d-4fbc-9c6c-f76251148c77_mirnaseq_gdc_realn.bam 200481127 BAM harmonized CPTAC3 d392c493-6975-45ce-8e19-12b078401d91 86942fa93e9694a4156e6a6393b81e4b {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.RNA-Seq.chimeric.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.chimeric.gdc_realn.bam 256240369 BAM chimeric harmonized CPTAC3 9ec3d138-6165-47ed-a20d-be415cd6e749 697db6c1ce4d6f8d9ceb43ec00144b51 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.RNA-Seq.chimeric.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.chimeric.gdc_realn.bam 196211898 BAM chimeric harmonized CPTAC3 7a98ff20-b386-4ea9-9945-db05b57f049a 0feb1b60d44963b290d02d2946563117 {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.RNA-Seq.genomic.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.genomic.gdc_realn.bam 5933635986 BAM genomic harmonized CPTAC3 43f0afd7-d8ae-4eed-bde9-e89ae1f04647 83e1fddd5f44e8813e00b9eaa71d0a93 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.RNA-Seq.genomic.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.genomic.gdc_realn.bam 8357248813 BAM genomic harmonized CPTAC3 766e578a-85be-4ba5-a4c4-2299a600bd16 3b1fd112c62a175f6b750f68fe78c096 {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.RNA-Seq.S5_L002_R1.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R1_001.fastq.gz 2776063190 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 b0d640ca-cb22-4a66-ba1f-69b8fe7ad785 70c480bda998fbaef61626184fea524c {"aliquot_tag": "ALQ_29b08dfb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.RNA-Seq.S5_L002_R1.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R1_001.fastq.gz 4025580142 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 c9262a6c-7dcf-424d-83aa-67ca0302dabd 5f5b5b5696ed8873cf47bab4af8d0aa8 {"aliquot_tag": "ALQ_9680339a", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.RNA-Seq.S5_L002_R2.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R2_001.fastq.gz 3022014343 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 11677d95-4d86-4bcb-88e8-1f3ad3ee47db ef6529892cce781fed286859439ab2e9 {"aliquot_tag": "ALQ_29b08dfb", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.RNA-Seq.S5_L002_R2.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R2_001.fastq.gz 4428893679 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 4aef951a-5c9b-4958-8087-7c984ed73fc0 8da7b85be21e8adc1f4eb5c2e28f83b7 {"aliquot_tag": "ALQ_9680339a", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.RNA-Seq.transcriptome.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.transcriptome.gdc_realn.bam 6301660694 BAM transcriptome harmonized CPTAC3 5b25cc74-293d-460d-a09b-f26abded9a5e 916e5d665670de63307af39300a1ad21 {"aliquot_tag": "ALQ_29b08dfb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.RNA-Seq.transcriptome.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.transcriptome.gdc_realn.bam 10545806269 BAM transcriptome harmonized CPTAC3 7c9fbb50-1229-40b7-a8dd-65b8011284d1 3cb13cf86bd0562e2bc9c0676169b968 {"aliquot_tag": "ALQ_9680339a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.WGS.N C3N-03882 LSCC WGS blood_normal CPT0237820002 CPT0237820002.WholeGenome.RP-1303.bam 60661657819 BAM submitted_aligned CPTAC3 4961ce53-fea1-4a27-84a9-dfdb2070ead0 db477b8427b96f16cbe140410aad4cb6 {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03882.WGS.N.hg38 C3N-03882 LSCC WGS blood_normal CPT0237820002 08b8360a-6655-4096-bfc9-46dab9751926_wgs_gdc_realn.bam 89442085514 BAM harmonized CPTAC3 09beeeda-3425-4b24-9b16-a40d53dbb759 96c8b32866223756ab8a292ef1cfca10 {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03882.WGS.T C3N-03882 LSCC WGS tumor CPT0237760006 CPT0237760006.WholeGenome.RP-1303.bam 58056937231 BAM submitted_aligned CPTAC3 4dc46c97-551f-45a2-87cf-6ea392308d76 b8c7772be6ce3b2864c579084e75e44e {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.WGS.T.hg38 C3N-03882 LSCC WGS tumor CPT0237760006 972d4ce3-7e18-4cec-a086-ce898371b25b_wgs_gdc_realn.bam 85416244306 BAM harmonized CPTAC3 0a295001-3585-47ac-a5cd-7253c8d4dc16 cc17b07d092e602aa59ba790c820f9df {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.WXS.A C3N-03882 LSCC WXS tissue_normal CPT0237780006 CPT0237780006.WholeExome.RP-1303.bam 24043100667 BAM submitted_aligned CPTAC3 a67b58d5-bba6-4db8-94b7-afe44653e926 87199542002adc7039050789868627ea {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.WXS.A.hg38 C3N-03882 LSCC WXS tissue_normal CPT0237780006 eddc54b2-f83b-4c3c-90c8-fb1dac969875_wxs_gdc_realn.bam 33407778345 BAM harmonized CPTAC3 80e42aa9-fab5-4b81-afeb-4b67d58f1403 6810b3d89f2c9470b00e4e72d64ade54 {"aliquot_tag": "ALQ_b90f906a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03882.WXS.N C3N-03882 LSCC WXS blood_normal CPT0237820002 CPT0237820002.WholeExome.RP-1303.bam 27261228316 BAM submitted_aligned CPTAC3 37cb8ea4-91b8-4bd0-b01e-54c0fc73e0fb a5453763374a27c8492d58e6eaae1131 {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03882.WXS.N.hg38 C3N-03882 LSCC WXS blood_normal CPT0237820002 08b8360a-6655-4096-bfc9-46dab9751926_wxs_gdc_realn.bam 36944866466 BAM harmonized CPTAC3 bb04dfe1-55c9-4f9d-bb4a-436839300327 b533299456d933ca2de53aa7351f052b {"aliquot_tag": "ALQ_584fe07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03882.WXS.T C3N-03882 LSCC WXS tumor CPT0237760006 CPT0237760006.WholeExome.RP-1303.bam 25758683191 BAM submitted_aligned CPTAC3 f8e3743b-f546-40e6-a4cd-545cd84a5e57 5a7b19a82340d1994bf1056fc8d42afa {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03882.WXS.T.hg38 C3N-03882 LSCC WXS tumor CPT0237760006 972d4ce3-7e18-4cec-a086-ce898371b25b_wxs_gdc_realn.bam 35827106028 BAM harmonized CPTAC3 840c57c9-2d79-44e4-a134-fe434377ad18 3b8cd3adf598a8ab3c6849cea6b98cc1 {"aliquot_tag": "ALQ_63f2e0b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.MethArray.Green.A C3N-03884 PDA Methylation_Array tissue_normal CPT0237850007 203561450023_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3e962de9-1c1f-458a-b92e-237dc790efbd 3d3a1176c837ed4bbf08e41e197e091f {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03884.MethArray.Green.T C3N-03884 PDA Methylation_Array tumor CPT0237840007 203561620040_R01C01_Grn.idat 13676212 IDAT Green NA CPTAC3 9cf266f0-9f81-4182-8a66-ef304531f70c 17f6e3fe3d00b3b2724ecc3c94294a87 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.MethArray.Red.A C3N-03884 PDA Methylation_Array tissue_normal CPT0237850007 203561450023_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 555c0ca8-4c30-412e-b5f1-8e9eb11327c8 31ef1c173d0a29b4e1bae2ea7bafd448 {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03884.MethArray.Red.T C3N-03884 PDA Methylation_Array tumor CPT0237840007 203561620040_R01C01_Red.idat 13676212 IDAT Red NA CPTAC3 4edad122-e429-40f8-bb03-098fe6b587c5 f7dddb4594c44e08f5105c5181dfa659 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.miRNA-Seq.S168_L007_R1.T C3N-03884 PDA miRNA-Seq tumor CPT0237840010 190828_UNC32-K00270_0200_BH7GVJBBXY_ACAGTG_S168_L007_R1_001.unaln.bam 394032776 BAM S168_L007_R1 submitted_unaligned CPTAC3 a83670e8-27f1-416f-954d-791e7627673d 4ae4963a218e8863c6d0d05b8cc70fbf {"aliquot_tag": "ALQ_7dd15bca", "sample": "S168", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.miRNA-Seq.T.hg38 C3N-03884 PDA miRNA-Seq tumor CPT0237840010 d16eea16-2b24-4890-a3c8-968292edaa85_mirnaseq_gdc_realn.bam 437245397 BAM harmonized CPTAC3 957f6599-ebef-40ed-80e5-30e0fed4c3b6 b3991b534230bc6e23788a184baff489 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.RNA-Seq.chimeric.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.chimeric.gdc_realn.bam 120544865 BAM chimeric harmonized CPTAC3 bb0a6ece-dd31-4453-adcd-157887792f1b 525757ef8f1926e4ca4003c061b71f73 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.RNA-Seq.genomic.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.genomic.gdc_realn.bam 7514768956 BAM genomic harmonized CPTAC3 101259b3-52fa-42cb-b837-e8a8636c67b7 8243b120ed3407f106c465ffb9588466 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.RNA-Seq.S4_L001_R1.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R1_001.fastq.gz 2696062533 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 1678b0d3-790a-47c6-8932-84b97d78b646 50000a1bf8a43f5cfb02604be9a2f068 {"aliquot_tag": "ALQ_7dd15bca", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.RNA-Seq.S4_L001_R2.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R2_001.fastq.gz 2709463050 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 a8a094fa-5246-43bc-8935-4df5619244bc 953848572f69b52ac023b83c1080d1a9 {"aliquot_tag": "ALQ_7dd15bca", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.RNA-Seq.transcriptome.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.transcriptome.gdc_realn.bam 6134701698 BAM transcriptome harmonized CPTAC3 8472f05f-572b-40b9-bb13-5e01fe6746db bfb4636a0326b32350513039d7ceef10 {"aliquot_tag": "ALQ_7dd15bca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.WGS.N C3N-03884 PDA WGS blood_normal CPT0237890002 CPT0237890002.WholeGenome.RP-1303.bam 56628943971 BAM submitted_aligned CPTAC3 27da3126-fd91-4fd3-94a6-435ad06e2001 c1377b33d934b96c57b202cec5352277 {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03884.WGS.N.hg38 C3N-03884 PDA WGS blood_normal CPT0237890002 5ba8387a-5795-4b55-8f83-9d3440b657f2_wgs_gdc_realn.bam 81522284921 BAM harmonized CPTAC3 94c56c37-9798-4a89-9078-f02d4a2f44d4 fb57f320d5c94e105278e68f17d658a3 {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03884.WGS.T C3N-03884 PDA WGS tumor CPT0237840007 CPT0237840007.WholeGenome.RP-1303.bam 163799146402 BAM submitted_aligned CPTAC3 079dda1b-2709-46d9-9fa2-747ba3f8e684 b2bd936fc45e70b65788a1a63d818d43 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.WGS.T.hg38 C3N-03884 PDA WGS tumor CPT0237840007 87297bf5-8869-4ea2-9dd3-976928552d5c_wgs_gdc_realn.bam 232452383508 BAM harmonized CPTAC3 b3693605-b4a0-4222-88a6-eadb5a249e90 d77bf2cf426c60aaadd1455ccde24832 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.WXS.A C3N-03884 PDA WXS tissue_normal CPT0237850007 CPT0237850007.WholeExome.RP-1303.bam 21887015023 BAM submitted_aligned CPTAC3 e3901c47-1c8a-432a-8159-12a105ee2ddd e17594e7ce9f4ba030bff14a727ff8c4 {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03884.WXS.A.hg38 C3N-03884 PDA WXS tissue_normal CPT0237850007 f20d08f0-8eb4-483d-8916-3b19bf7292f4_wxs_gdc_realn.bam 29804537263 BAM harmonized CPTAC3 1592ef66-643e-48bc-bdd7-65ab54c84167 d93f70005f1375d23175cf04883db6f8 {"aliquot_tag": "ALQ_c7ced698", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03884.WXS.N C3N-03884 PDA WXS blood_normal CPT0237890002 CPT0237890002.WholeExome.RP-1303.bam 24745672953 BAM submitted_aligned CPTAC3 9946aab5-0bff-4c2a-a00d-d05d540c064f 17bf67ba8e18cd860232c327c005a01b {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03884.WXS.N.hg38 C3N-03884 PDA WXS blood_normal CPT0237890002 5ba8387a-5795-4b55-8f83-9d3440b657f2_wxs_gdc_realn.bam 33830566362 BAM harmonized CPTAC3 2b1c4de6-c7a8-46c5-8aa3-2d0deadf966f c522b0754934d014b4b547f585b09a8e {"aliquot_tag": "ALQ_7254cf16", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03884.WXS.T C3N-03884 PDA WXS tumor CPT0237840007 CPT0237840007.WholeExome.RP-1303.bam 48812729493 BAM submitted_aligned CPTAC3 3e8f0562-d90a-4994-a23d-76b336af7d8c 5b3f5cd3e0957efae35503ed5edaaebf {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03884.WXS.T.hg38 C3N-03884 PDA WXS tumor CPT0237840007 87297bf5-8869-4ea2-9dd3-976928552d5c_wxs_gdc_realn.bam 68175848017 BAM harmonized CPTAC3 878beaab-a108-4aa4-b18a-a0d91624450a c285cfdd7c3ebfb1a47a8af88652b9c6 {"aliquot_tag": "ALQ_faaeff28", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.MethArray.Green.A C3N-03886 LSCC Methylation_Array tissue_normal CPT0221660006 203219760074_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 9c04d0cd-99f0-4e54-abde-9650f24dd2d7 3516164af9c1b8c42a8a711a4882ffd2 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03886.MethArray.Green.T C3N-03886 LSCC Methylation_Array tumor CPT0221650006 203219650098_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 35d609ef-7268-4d2d-9bff-236353f4882d 8ab0113107729d9d9113b7a8347bf44d {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.MethArray.Red.A C3N-03886 LSCC Methylation_Array tissue_normal CPT0221660006 203219760074_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 8ee57a02-98e6-4456-860c-18d8be72633f f4c7c7b9fc4e618b6afcb7c0964cc9d9 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03886.MethArray.Red.T C3N-03886 LSCC Methylation_Array tumor CPT0221650006 203219650098_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 5eb279ae-0024-4626-a090-d2e49c2b2549 e8e5fa7c2d3b05ff4d8c9abf1f7a740a {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.miRNA-Seq.S38_L002_R1.T C3N-03886 LSCC miRNA-Seq tumor CPT0221650009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGCTAC_S38_L002_R1_001.unaln.bam 172303621 BAM S38_L002_R1 submitted_unaligned CPTAC3 dca7c184-a415-4cf2-93dd-2c22957e7067 67e57a2177b23a1a117094421d6f4614 {"aliquot_tag": "ALQ_b506af4b", "sample": "S38", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.miRNA-Seq.T.hg38 C3N-03886 LSCC miRNA-Seq tumor CPT0221650009 246fb493-3c11-410a-a37b-ea57dad4ad8d_mirnaseq_gdc_realn.bam 191671121 BAM harmonized CPTAC3 bf92552a-1335-48b5-a11b-1ce07c39b5b4 2f0bd3e78c05f692571290308668b0ca {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.RNA-Seq.chimeric.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.chimeric.gdc_realn.bam 45463265 BAM chimeric harmonized CPTAC3 232186f6-9195-4b80-b031-f769f402acb2 7ac6087f5788e553f2ced0b988e712a3 {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.RNA-Seq.genomic.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.genomic.gdc_realn.bam 15865791292 BAM genomic harmonized CPTAC3 3266560c-3c0e-4bbd-a0e7-8871b63afab5 41ca848c6dd16f35ce3725af0f238429 {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.RNA-Seq.S17_L005_R1.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R1_001.fastq.gz 4178740767 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 de33e2bb-7c5c-4f98-9b87-bec139d5e995 51b17fea925e3ebb6a4750eede56e6b1 {"aliquot_tag": "ALQ_b506af4b", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.RNA-Seq.S17_L005_R2.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R2_001.fastq.gz 4758890971 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 d58be8b5-b6c7-4bb2-b5da-d2d15d69e7e8 5f8b8c83417b0789391c784fcad2c150 {"aliquot_tag": "ALQ_b506af4b", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.RNA-Seq.transcriptome.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.transcriptome.gdc_realn.bam 7834382134 BAM transcriptome harmonized CPTAC3 aaa0f769-cae2-48ad-ba5f-b49f0d9555d0 3a4febaa20837ed9812745ff0028a38f {"aliquot_tag": "ALQ_b506af4b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.WGS.N C3N-03886 LSCC WGS blood_normal CPT0221750002 CPT0221750002.WholeGenome.RP-1303.bam 60925070171 BAM submitted_aligned CPTAC3 263085d9-f508-4475-8499-3b81d88f9904 5c87561c329cf78bfd493384715b8fe2 {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03886.WGS.N.hg38 C3N-03886 LSCC WGS blood_normal CPT0221750002 b3179798-a286-4505-b913-4b922716565c_wgs_gdc_realn.bam 88759881829 BAM harmonized CPTAC3 2718410a-0a35-41b7-81e0-c5ddc8fa8c31 76f1ec591272d81b8f48fa385f114212 {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03886.WGS.T C3N-03886 LSCC WGS tumor CPT0221650006 CPT0221650006.WholeGenome.RP-1303.bam 68818956241 BAM submitted_aligned CPTAC3 1b50f970-2066-46bb-ac03-128af7a96e4f 678a754681c5063174fe1fa4cb18a777 {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.WGS.T.hg38 C3N-03886 LSCC WGS tumor CPT0221650006 bc1a4b77-dcb6-4ee6-8c9f-d98f04caed85_wgs_gdc_realn.bam 98556067229 BAM harmonized CPTAC3 12a14574-1d43-4e12-8151-71a84ce1f0d2 be34f433d6bac91cb71910dafe3b9008 {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.WXS.A C3N-03886 LSCC WXS tissue_normal CPT0221660006 CPT0221660006.WholeExome.RP-1303.bam 21107621471 BAM submitted_aligned CPTAC3 b896b5f0-92b4-4351-8870-5bc3b5f4bd50 da854e2ce7216b600c60556237adce14 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03886.WXS.A.hg38 C3N-03886 LSCC WXS tissue_normal CPT0221660006 e64e0512-4048-42b2-b5b2-9586ebc65a5b_wxs_gdc_realn.bam 28766981206 BAM harmonized CPTAC3 866266c3-d922-4b82-80e6-01125640ca62 d246b95234e9b99b94ea4509b2ec4e27 {"aliquot_tag": "ALQ_6219c80a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03886.WXS.N C3N-03886 LSCC WXS blood_normal CPT0221750002 CPT0221750002.WholeExome.RP-1303.bam 33070535528 BAM submitted_aligned CPTAC3 9c34a835-8871-48e1-9c26-2dfcbd4e5d89 5866e0bb8620b5a39f1d27a4d7ec2187 {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03886.WXS.N.hg38 C3N-03886 LSCC WXS blood_normal CPT0221750002 b3179798-a286-4505-b913-4b922716565c_wxs_gdc_realn.bam 45068587962 BAM harmonized CPTAC3 71a8e255-ea4f-463f-934f-4bc877733b20 ef2caf0d9b3a9cd63757bf84d4610a4e {"aliquot_tag": "ALQ_e988a566", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03886.WXS.T C3N-03886 LSCC WXS tumor CPT0221650006 CPT0221650006.WholeExome.RP-1303.bam 26495383614 BAM submitted_aligned CPTAC3 116749f2-be39-4166-8276-d4e9dccd98f1 215fb491f95fe37d8e3aa9219eb3d88c {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03886.WXS.T.hg38 C3N-03886 LSCC WXS tumor CPT0221650006 bc1a4b77-dcb6-4ee6-8c9f-d98f04caed85_wxs_gdc_realn.bam 37176525652 BAM harmonized CPTAC3 c424eaa1-3ed7-4967-bfd0-b4a7f884fe80 521cbfd01a773b4c2ea59e82f92318da {"aliquot_tag": "ALQ_25b9b2da", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.MethArray.Green.A C3N-03888 HNSCC Methylation_Array tissue_normal CPT0222200006 203271740156_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4a4e9ca6-5035-4dbd-8899-1d1770a1238a 20d3be9a23fa9e8cf10ddeb41d40109c {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.MethArray.Green.T C3N-03888 HNSCC Methylation_Array tumor CPT0222180006 203273200080_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4369286b-73bd-4143-aa1a-31acb22511a1 584be609d4a7791bcae2864378bd843d {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.MethArray.Red.A C3N-03888 HNSCC Methylation_Array tissue_normal CPT0222200006 203271740156_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 e86b9b5a-f920-48e3-aa70-428d1625a3e6 36c8db957bb42901c61d26634c3e19d5 {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.MethArray.Red.T C3N-03888 HNSCC Methylation_Array tumor CPT0222180006 203273200080_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 a6580077-ad63-48bc-bcc8-50fca774e22a f9aa8737f557936ae3d49ad135542ed7 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.miRNA-Seq.A.hg38 C3N-03888 HNSCC miRNA-Seq tissue_normal CPT0222200009 88a939be-faa7-456e-b729-0b78e6e7cacc_mirnaseq_gdc_realn.bam 330318648 BAM harmonized CPTAC3 7140b257-ca82-4875-9ab6-399a8abe7f7d 95cb718bd0c9d5bb8bfce025f49c5b95 {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.miRNA-Seq.S26_L004_R1.T C3N-03888 HNSCC miRNA-Seq tumor CPT0222180009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L004_R1_001.unaln.bam 201760053 BAM S26_L004_R1 submitted_unaligned CPTAC3 c5ad1ccb-4942-4031-930e-95dd38cf5ab5 147e0dbb6223da7fbed04cb34fa91f86 {"aliquot_tag": "ALQ_617b41df", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.miRNA-Seq.S31_L004_R1.A C3N-03888 HNSCC miRNA-Seq tissue_normal CPT0222200009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L004_R1_001.unaln.bam 295858461 BAM S31_L004_R1 submitted_unaligned CPTAC3 0a94164e-06a1-4fb4-abc2-9c2430a361bc 09de5cd30b3806568bc79abf2c4fd29c {"aliquot_tag": "ALQ_d79f78b0", "sample": "S31", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.miRNA-Seq.T.hg38 C3N-03888 HNSCC miRNA-Seq tumor CPT0222180009 2452b2f3-1b5b-4ac2-84bd-228b7b292fcc_mirnaseq_gdc_realn.bam 226713649 BAM harmonized CPTAC3 1321b9ca-bc13-4b17-a135-841d75caa5b0 bb2c6b5b631d724030487170f1084223 {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.chimeric.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.chimeric.gdc_realn.bam 156733050 BAM chimeric harmonized CPTAC3 08bf9e2c-f376-46fb-b695-418251ae304c c8e3cfb76997861618ab89a0a93b6c8b {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.RNA-Seq.chimeric.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.chimeric.gdc_realn.bam 247290708 BAM chimeric harmonized CPTAC3 42bfb5c6-c29e-44ac-9957-fd757b08357f 0c26510b366e494b7c3b84100fab839f {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.chimeric.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.chimeric.gdc_realn.bam 75591505 BAM chimeric harmonized CPTAC3 73c53183-60b7-4aa1-a0cd-ea746bdcfe4b 4c56d8a8590e5a9844ed72a88af74c05 {"aliquot_tag": "ALQ_ba9f92a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.genomic.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.genomic.gdc_realn.bam 6599835204 BAM genomic harmonized CPTAC3 a218d75a-5610-425e-b693-91cc200dee5d a3cf78ed26e039634f671f711d6217ad {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.RNA-Seq.genomic.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.genomic.gdc_realn.bam 9766914846 BAM genomic harmonized CPTAC3 70d7e6f4-2d37-4532-9a5b-ff2519e8fc5a 6b4a25757e72c1b5d91d454392870857 {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.genomic.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.genomic.gdc_realn.bam 5649968948 BAM genomic harmonized CPTAC3 d7e4f485-6dba-4ac2-9d03-47cb3f1caded 93d40c51443272607cdffa77e9842259 {"aliquot_tag": "ALQ_ba9f92a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.S10_L003_R1.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3030883408 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 fcc77279-5b11-48ef-a3dd-b8f405001db8 3ce1358dcb9b79668f390eeb70bfa6f3 {"aliquot_tag": "ALQ_d79f78b0", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.RNA-Seq.S10_L003_R2.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R2_001.fastq.gz 3442612036 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 3c012358-3cb4-48ff-8d59-6f9569938efb 0b4237a627a62d42eb45e93ad7cb37e3 {"aliquot_tag": "ALQ_d79f78b0", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.RNA-Seq.S14_L004_R1.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4553645416 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 17188511-f16d-405d-89fb-ed2ca75347f7 8e6a4fdad2cc5393ba888c39e47aa19e {"aliquot_tag": "ALQ_617b41df", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.S14_L004_R2.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R2_001.fastq.gz 4928814920 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 b765e30c-be42-4c21-a619-b408c14917a4 2807fb9668a6b0117649b96c4ce84206 {"aliquot_tag": "ALQ_617b41df", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.S92_R1.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R1_001.fastq.gz 3503178804 FASTQ S92_R1 submitted_unaligned CPTAC3 cebe98a9-1182-4016-af99-a4a2e46a85c1 f4839edd581684c751d417b1cb214173 {"aliquot_tag": "ALQ_ba9f92a3", "sample": "S92", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.S92_R2.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R2_001.fastq.gz 3694628358 FASTQ S92_R2 submitted_unaligned CPTAC3 09fe03e6-8b5e-4f61-8f56-e021b63f1dab bd333058683d32fc08237a8b19cdb785 {"aliquot_tag": "ALQ_ba9f92a3", "sample": "S92", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.transcriptome.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.transcriptome.gdc_realn.bam 9418310106 BAM transcriptome harmonized CPTAC3 3a78d2cc-a7ae-4b9a-a583-0e889ec2ad79 043008e4882544abe32bc7b290d6f61b {"aliquot_tag": "ALQ_d79f78b0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.RNA-Seq.transcriptome.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.transcriptome.gdc_realn.bam 13384821203 BAM transcriptome harmonized CPTAC3 c7f65f1c-4c2c-4307-a93d-4a204b740caf 1bd47433eb091a26cec610910ab85366 {"aliquot_tag": "ALQ_617b41df", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.RNA-Seq.transcriptome.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.transcriptome.gdc_realn.bam 3873275061 BAM transcriptome harmonized CPTAC3 d76c908a-0374-4d3a-bca9-1685ff704c1e 77270d7fb60f9c50f8ceee9c6df7b9b2 {"aliquot_tag": "ALQ_ba9f92a3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.WGS.N C3N-03888 HNSCC WGS blood_normal CPT0222290002 CPT0222290002.WholeGenome.RP-1303.bam 90258196023 BAM submitted_aligned CPTAC3 c37f5e9e-4c06-4de4-874b-3d66cbfb99c8 98434f2cb51e00a82afe9dcc6e3a3a0c {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03888.WGS.N.hg38 C3N-03888 HNSCC WGS blood_normal CPT0222290002 86c78340-b7f1-4b1d-928e-86ce8f3894b3_wgs_gdc_realn.bam 131686408082 BAM harmonized CPTAC3 87a40420-6df6-4d45-a135-da580355a587 9552f9473cc334bdb5727bb451d71983 {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03888.WGS.T C3N-03888 HNSCC WGS tumor CPT0222180006 CPT0222180006.WholeGenome.RP-1303.bam 66960707763 BAM submitted_aligned CPTAC3 2d6dd5c7-8e55-4425-85d9-3988c2a1e086 9cfa4f227562f3e299560386cfefaec8 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.WGS.T.hg38 C3N-03888 HNSCC WGS tumor CPT0222180006 38209b0e-a918-4b88-a088-b73ba722a869_wgs_gdc_realn.bam 96431595489 BAM harmonized CPTAC3 2d28c6b8-2099-480f-adc0-2b9a24b400a6 55ec6e556cd45d50d55649d8c644c5f1 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.WXS.A C3N-03888 HNSCC WXS tissue_normal CPT0222200006 CPT0222200006.WholeExome.RP-1303.bam 24227532300 BAM submitted_aligned CPTAC3 55746eee-03dc-4142-8eba-a2eb3df23734 820b467eda4aaed6002735e7f6c672c6 {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.WXS.A.hg38 C3N-03888 HNSCC WXS tissue_normal CPT0222200006 55569947-5f0d-4412-b9b5-bb7a8e298bbe_wxs_gdc_realn.bam 33958206984 BAM harmonized CPTAC3 7fe71edb-e254-439d-ab36-ab45388a8535 e40932453e093def54835d9c1dfc3507 {"aliquot_tag": "ALQ_47206521", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03888.WXS.N C3N-03888 HNSCC WXS blood_normal CPT0222290002 CPT0222290002.WholeExome.RP-1303.bam 45712126177 BAM submitted_aligned CPTAC3 43cc321b-7b3c-4a78-989d-87daf5b94eb3 c3499e7387cce6f737aadf57ccaf714e {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03888.WXS.N.hg38 C3N-03888 HNSCC WXS blood_normal CPT0222290002 86c78340-b7f1-4b1d-928e-86ce8f3894b3_wxs_gdc_realn.bam 63243431557 BAM harmonized CPTAC3 6abded9f-d254-48c6-ba93-bc873d7957d4 f9b62d5b9bda8a429745830e11829aef {"aliquot_tag": "ALQ_4d5dc349", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03888.WXS.T C3N-03888 HNSCC WXS tumor CPT0222180006 CPT0222180006.WholeExome.RP-1303.bam 20877827636 BAM submitted_aligned CPTAC3 dd4cd44f-bdf0-4a29-8e98-9691de73574e d9b19eb639c81f7ad1cee0b495feb336 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03888.WXS.T.hg38 C3N-03888 HNSCC WXS tumor CPT0222180006 38209b0e-a918-4b88-a088-b73ba722a869_wxs_gdc_realn.bam 29200262975 BAM harmonized CPTAC3 73c30c4b-b8ca-4856-a6d2-45b20304ebd4 c7595314b79878c63bae7d35292297e6 {"aliquot_tag": "ALQ_f1c45c4e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.MethArray.Green.A C3N-03889 HNSCC Methylation_Array tissue_normal CPT0222380006 203220070084_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 cbc61f77-a704-4c95-884c-57b341bfaece 505b34dcd4db5a9c9271dc27626b677d {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.MethArray.Green.T C3N-03889 HNSCC Methylation_Array tumor CPT0222360006 203219650071_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0d56f023-bf21-4f28-bbda-b0bc87ac5f02 619a4a7cbb8a19e6cb0ea9d404d1fcd3 {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.MethArray.Red.A C3N-03889 HNSCC Methylation_Array tissue_normal CPT0222380006 203220070084_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 db2cabd3-775b-402d-ad12-f040853ed126 79a6faf025a94e8cb7aa3cf0cb0c58e3 {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.MethArray.Red.T C3N-03889 HNSCC Methylation_Array tumor CPT0222360006 203219650071_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 a5efb44a-6daf-42e2-b0d7-bb10c33c33b5 35caacbcbdbc36c885df8431feb1dfad {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.miRNA-Seq.A.hg38 C3N-03889 HNSCC miRNA-Seq tissue_normal CPT0222380009 9573ab0b-4cbd-4471-8eb3-6ea38df4e9d7_mirnaseq_gdc_realn.bam 259212799 BAM harmonized CPTAC3 94100cb8-6e04-4edf-917d-6d6f8f8b0aac ba6294e6fb29a20a881093700a5157fc {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.miRNA-Seq.S11_L005_R1.A C3N-03889 HNSCC miRNA-Seq tissue_normal CPT0222380009 190228_UNC32-K00270_0151_AHYLY3BBXX_GGCTAC_S11_L005_R1_001.unaln.bam 234017767 BAM S11_L005_R1 submitted_unaligned CPTAC3 7f26d074-c140-452c-b6a2-1643cd724b73 de226de55c9d854d4038dbe2741a3635 {"aliquot_tag": "ALQ_2cb3e0d4", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.miRNA-Seq.S27_L004_R1.T C3N-03889 HNSCC miRNA-Seq tumor CPT0222360009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATTCCT_S27_L004_R1_001.unaln.bam 264225021 BAM S27_L004_R1 submitted_unaligned CPTAC3 7422100b-2dda-4027-9eb5-00e179af088c 4acd52485bbe69d219a68685d3998087 {"aliquot_tag": "ALQ_93835eb5", "sample": "S27", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.miRNA-Seq.T.hg38 C3N-03889 HNSCC miRNA-Seq tumor CPT0222360009 dd3b5059-ee17-4418-b926-487464175aad_mirnaseq_gdc_realn.bam 287837655 BAM harmonized CPTAC3 6fdeab76-41c1-4664-8f46-6f9ce9a59ec4 c27185643e5df2cedf0600a64675cfc8 {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.chimeric.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.chimeric.gdc_realn.bam 32679148 BAM chimeric harmonized CPTAC3 1c170672-dd11-4592-b87e-5ca02d516bc2 bfc67e0df034117dcf2f9f978c96c4be {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.RNA-Seq.chimeric.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.chimeric.gdc_realn.bam 263211272 BAM chimeric harmonized CPTAC3 aa6e1c92-3145-4ce0-b566-2d8e73fd930b c4c671d21850f67ff6025433d14cc9e8 {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.chimeric.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.chimeric.gdc_realn.bam 87999035 BAM chimeric harmonized CPTAC3 583933ad-d66c-4ca8-87c8-ac9e0fb5f379 5eef62e7887da275b9151092280ff1e9 {"aliquot_tag": "ALQ_160622de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.genomic.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.genomic.gdc_realn.bam 9151960888 BAM genomic harmonized CPTAC3 afe2ffe6-e9fd-4e96-9493-1a0f269ae0cf fc6690035d8c571fe6b67956148cd294 {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.RNA-Seq.genomic.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.genomic.gdc_realn.bam 7612100018 BAM genomic harmonized CPTAC3 d1f6235f-379a-4ac9-b376-2e5f4690a28d ea9c63b354cc215614258eb04ea892d7 {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.genomic.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.genomic.gdc_realn.bam 6363825981 BAM genomic harmonized CPTAC3 b4bf2783-f50f-490d-9639-00ce93ab506a b46acf67a48923600e28cf19bd3cc03a {"aliquot_tag": "ALQ_160622de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.S13_L004_R1.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3629732826 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 2221c762-196d-4b8b-ba2c-f4bdc53afd93 59d1bfe392776cfa1b75ae724c5960a8 {"aliquot_tag": "ALQ_93835eb5", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.S13_L004_R2.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 3975259091 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 cacbff5a-955b-414d-a704-d6ec3a743d7a c2f1c21ef0e813f69a8dc679e319ef16 {"aliquot_tag": "ALQ_93835eb5", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.S21_L005_R1.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R1_001.fastq.gz 4036130771 FASTQ S21_L005_R1 submitted_unaligned CPTAC3 f7e2adee-d8e3-4c03-b60e-ac195c5c288b 43396bf5e3c7ae3d96ddc6e0874b4ad0 {"aliquot_tag": "ALQ_2cb3e0d4", "sample": "S21", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.RNA-Seq.S21_L005_R2.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R2_001.fastq.gz 4522765754 FASTQ S21_L005_R2 submitted_unaligned CPTAC3 af496696-82f4-498d-8992-601da5f26bfc 5fa7abdd680c5402b26f0ee01a822908 {"aliquot_tag": "ALQ_2cb3e0d4", "sample": "S21", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.RNA-Seq.S22_R1.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R1_001.fastq.gz 3729113005 FASTQ S22_R1 submitted_unaligned CPTAC3 ed2a9f0d-bfdf-4349-9bfe-df245ac6cccb 9250592a445668b043cb0c192f4e613a {"aliquot_tag": "ALQ_160622de", "sample": "S22", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.S22_R2.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R2_001.fastq.gz 3990982392 FASTQ S22_R2 submitted_unaligned CPTAC3 785c8c78-71a9-4323-894a-ca12b22f91bd a4b990da1171147e43c23ade27a4741d {"aliquot_tag": "ALQ_160622de", "sample": "S22", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.transcriptome.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.transcriptome.gdc_realn.bam 9388371473 BAM transcriptome harmonized CPTAC3 f09ac40c-ac0e-4193-9c2f-f94338799e1a 1c10be29eadac4e47359ef9f3deb7569 {"aliquot_tag": "ALQ_2cb3e0d4", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.RNA-Seq.transcriptome.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.transcriptome.gdc_realn.bam 10126858979 BAM transcriptome harmonized CPTAC3 b62bcad8-e467-4002-adc0-d2246def818a c4c957a1f448210fef950957bcba923f {"aliquot_tag": "ALQ_93835eb5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.RNA-Seq.transcriptome.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.transcriptome.gdc_realn.bam 5356521464 BAM transcriptome harmonized CPTAC3 f18c21c7-5560-414b-ba11-bf8e41a12f21 006862222afdea02f3f96464968c247f {"aliquot_tag": "ALQ_160622de", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.WGS.N C3N-03889 HNSCC WGS blood_normal CPT0222470002 CPT0222470002.WholeGenome.RP-1303.bam 71054681959 BAM submitted_aligned CPTAC3 4c231465-15c4-41ec-b0f9-111611d8233f df2c66612ede5e913c99d20e74e8a853 {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03889.WGS.N.hg38 C3N-03889 HNSCC WGS blood_normal CPT0222470002 f7210b31-9dd5-48f5-b101-dd58e93f7dc0_wgs_gdc_realn.bam 102403966142 BAM harmonized CPTAC3 41ed5788-2219-4055-9e2e-c432891610c3 bebae1be7a3280a09b2282c28c427280 {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03889.WGS.T C3N-03889 HNSCC WGS tumor CPT0222360006 CPT0222360006.WholeGenome.RP-1303.bam 90507531333 BAM submitted_aligned CPTAC3 c3e4d20a-57c4-4565-9adc-20759fd796aa 7f4ae4dc2c80c7aeb01eb255b299f01e {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.WGS.T.hg38 C3N-03889 HNSCC WGS tumor CPT0222360006 2a60e9e0-aa78-4d9b-809e-f20eed6ce533_wgs_gdc_realn.bam 133224110405 BAM harmonized CPTAC3 acccaed4-dea6-42a8-b7a9-9af4a40609cc feea589cfd055b527b26321691ff8e12 {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.WXS.A C3N-03889 HNSCC WXS tissue_normal CPT0222380006 CPT0222380006.WholeExome.RP-1303.bam 19253594135 BAM submitted_aligned CPTAC3 1cd95fbc-f400-411c-b7f8-9f59fb2a1be1 29e8b6de8a2b976f90d52fe1e8d1d46e {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.WXS.A.hg38 C3N-03889 HNSCC WXS tissue_normal CPT0222380006 77d9175d-f4ce-4a4f-bdb2-5429bb899818_wxs_gdc_realn.bam 26153309117 BAM harmonized CPTAC3 6ed83515-c868-4174-af4f-004142c95c37 fc942bf42d5de966b24578bacf1e2f87 {"aliquot_tag": "ALQ_bc0cfd45", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03889.WXS.N C3N-03889 HNSCC WXS blood_normal CPT0222470002 CPT0222470002.WholeExome.RP-1303.bam 47085806312 BAM submitted_aligned CPTAC3 1c65ad42-45e7-49e2-bad4-edaeab59cfbe 37c54596cb54ed661d7f29bde583be4e {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03889.WXS.N.hg38 C3N-03889 HNSCC WXS blood_normal CPT0222470002 f7210b31-9dd5-48f5-b101-dd58e93f7dc0_wxs_gdc_realn.bam 65096558616 BAM harmonized CPTAC3 d0d41824-27f6-49f0-afe2-5b8b74594d7b d3b0d9c89c38f217b78965c0d0098a67 {"aliquot_tag": "ALQ_24349e35", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03889.WXS.T C3N-03889 HNSCC WXS tumor CPT0222360006 CPT0222360006.WholeExome.RP-1303.bam 31557582836 BAM submitted_aligned CPTAC3 87ea4bc6-cc22-4df6-9302-99e853df90ed 0112494c593c84b1fd8e5477cf1d9e5e {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03889.WXS.T.hg38 C3N-03889 HNSCC WXS tumor CPT0222360006 2a60e9e0-aa78-4d9b-809e-f20eed6ce533_wxs_gdc_realn.bam 43406388856 BAM harmonized CPTAC3 4f8b99bd-49aa-472a-a6ce-797cda0cc9b6 fb785d3510f317545cd1676c5ffe3fb1 {"aliquot_tag": "ALQ_33c4324", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.MethArray.Green.A C3N-03890 LUAD Methylation_Array tissue_normal CPT0221380006 203561450017_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 37dbe7f7-833e-4f26-8321-a65b9bd4225e 373bddbc1ba54343ad69fefcae17b720 {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.MethArray.Green.T C3N-03890 LUAD Methylation_Array tumor CPT0221310006 203561450100_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 0936358f-ec33-4462-88b6-12fcc89ffdb1 cf40e8499cb1b22484d5f2f05c7a4248 {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.MethArray.Red.A C3N-03890 LUAD Methylation_Array tissue_normal CPT0221380006 203561450017_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 24b63247-9b4a-4084-8cf8-df50026e6571 bdf4d294a943a7280c4a741ae0d5ac06 {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.MethArray.Red.T C3N-03890 LUAD Methylation_Array tumor CPT0221310006 203561450100_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 1eb92da9-d1f2-40f9-ab29-1a9c2cfbc9ac fdf3b51aef835cd05a034f81a8aa8319 {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.miRNA-Seq.A.hg38 C3N-03890 LUAD miRNA-Seq tissue_normal CPT0221380009 62c51923-643e-4aae-9c48-6c13dac1be39_mirnaseq_gdc_realn.bam 235313305 BAM harmonized CPTAC3 a4b8f018-a6ed-4bc5-99cd-6dd23b39ead9 95b080f6e427a7213da97aecaa954688 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.miRNA-Seq.S12_L007_R1.T C3N-03890 LUAD miRNA-Seq tumor CPT0221310009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCGTCC_S12_L007_R1_001.unaln.bam 161722924 BAM S12_L007_R1 submitted_unaligned CPTAC3 9d3aadc0-d369-4040-86fa-9524dfd16711 ec66f4e1a315805feddc11727e03c459 {"aliquot_tag": "ALQ_104b9838", "sample": "S12", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.miRNA-Seq.S41_L005_R1.A C3N-03890 LUAD miRNA-Seq tissue_normal CPT0221380009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATCACG_S41_L005_R1_001.unaln.bam 212054573 BAM S41_L005_R1 submitted_unaligned CPTAC3 0490b640-afee-445a-8f18-07eea29df62b 2647a35377cfd85498feabe50c975a5f {"aliquot_tag": "ALQ_1d5bfa49", "sample": "S41", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.miRNA-Seq.T.hg38 C3N-03890 LUAD miRNA-Seq tumor CPT0221310009 c450929c-3b2a-4495-91dd-a52cd6f2bf5b_mirnaseq_gdc_realn.bam 177514108 BAM harmonized CPTAC3 a0b6e533-7141-4c30-b920-b025825152a2 326bd6f0f6d1a9c0c49f3b12f1b9db69 {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.RNA-Seq.chimeric.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.chimeric.gdc_realn.bam 39929627 BAM chimeric harmonized CPTAC3 23c56b38-3d79-47a7-a02f-a0825fbde505 3ea0b203b09914f5a8d268f1e3f91eb1 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.RNA-Seq.chimeric.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.chimeric.gdc_realn.bam 28053030 BAM chimeric harmonized CPTAC3 e615b15a-69cb-417f-bb8d-e737aa13f146 61de9350a5654b33fb6137e96aea955c {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.RNA-Seq.genomic.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.genomic.gdc_realn.bam 13916360259 BAM genomic harmonized CPTAC3 71f9cb07-5d7d-44d8-a541-90e35d49ffde 585d557dab872eb00531a4527c7b75f4 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.RNA-Seq.genomic.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.genomic.gdc_realn.bam 9547444686 BAM genomic harmonized CPTAC3 54fb3d25-6d68-4b89-a6d9-5beb1b12de30 6402002f3cd692f4b458113b4e001ce1 {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.RNA-Seq.S23_L006_R1.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R1_001.fastq.gz 4773370680 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 11ce8013-1cdf-4669-94a2-ba54b3b438bb 20205530ca128c6d9d86f01af77a3c9b {"aliquot_tag": "ALQ_1d5bfa49", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.RNA-Seq.S23_L006_R2.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R2_001.fastq.gz 5362843017 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 da3734ae-be56-401f-bb22-b89c6fd0ff8b 00162898366b32f06f51878676a9c4ca {"aliquot_tag": "ALQ_1d5bfa49", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.RNA-Seq.S30_L008_R1.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R1_001.fastq.gz 3627021987 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 aa2582cc-7725-4526-b8aa-7efbace71be6 cc335c33ac18a6543a107036676c564e {"aliquot_tag": "ALQ_104b9838", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.RNA-Seq.S30_L008_R2.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R2_001.fastq.gz 4024876278 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 8cc02255-1420-4f2d-9cc8-9f3ffdc52225 a91ae6a94618d31e916f1ff1f4b940b2 {"aliquot_tag": "ALQ_104b9838", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.RNA-Seq.transcriptome.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.transcriptome.gdc_realn.bam 9813883645 BAM transcriptome harmonized CPTAC3 5a5eff19-12ea-4120-89af-a50dc1b3701a eaaa924b3465bdd94c37bd7ef8741187 {"aliquot_tag": "ALQ_1d5bfa49", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.RNA-Seq.transcriptome.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.transcriptome.gdc_realn.bam 7285341880 BAM transcriptome harmonized CPTAC3 6fe41965-a28f-456b-8543-ff3262493652 5a8ca94199f353cd485ed1ca625b7ecd {"aliquot_tag": "ALQ_104b9838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.WGS.N C3N-03890 LUAD WGS blood_normal CPT0221560002 CPT0221560002.WholeGenome.RP-1303.bam 81732490427 BAM submitted_aligned CPTAC3 cc9cfe88-937d-45b5-8c56-ce4f2e39eaa2 a85d4791c6095adc1d266faa67225d73 {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03890.WGS.N.hg38 C3N-03890 LUAD WGS blood_normal CPT0221560002 7dd43c6c-2f91-4bec-92e4-be52d8a1700f_wgs_gdc_realn.bam 118835828080 BAM harmonized CPTAC3 dc291ec4-2f8d-4969-8c91-42fbdb5c0119 ac426b58d5d0db108e96d35ac9ec048b {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03890.WGS.T C3N-03890 LUAD WGS tumor CPT0221310006 CPT0221310006.WholeGenome.RP-1303.bam 76421517824 BAM submitted_aligned CPTAC3 11b43de6-fc0a-46a1-9ca6-87b917eab8fc a1c3a9acbf7e3dfd1dccde349f9572ab {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.WGS.T.hg38 C3N-03890 LUAD WGS tumor CPT0221310006 c22848a6-7e18-4fde-9152-978dd5539380_wgs_gdc_realn.bam 111598798427 BAM harmonized CPTAC3 f4bf91f0-ba76-459a-97c1-7c63ad7f8064 e8c20d697bf6d31ab0cde406d14ef63c {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.WXS.A C3N-03890 LUAD WXS tissue_normal CPT0221380006 CPT0221380006.WholeExome.RP-1303.bam 32067927633 BAM submitted_aligned CPTAC3 6bf33d52-d05d-4907-a2a2-b737b5b5837d 5df77e7aa453968294539a54d0c105ec {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.WXS.A.hg38 C3N-03890 LUAD WXS tissue_normal CPT0221380006 9df9095d-3a54-4ea5-8cb2-4f1ec94f3879_wxs_gdc_realn.bam 44810404043 BAM harmonized CPTAC3 cfc81860-4796-4c02-b701-c0bb904c93e9 f1406df8db90ef4bafb3f8ff88d533e0 {"aliquot_tag": "ALQ_8de4e7d8", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03890.WXS.N C3N-03890 LUAD WXS blood_normal CPT0221560002 CPT0221560002.WholeExome.RP-1303.bam 30101789149 BAM submitted_aligned CPTAC3 f6c04c5a-805a-4622-81d2-c1ea0984d94d 402511d6d006c3bd13d94d8e24d4d964 {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03890.WXS.N.hg38 C3N-03890 LUAD WXS blood_normal CPT0221560002 7dd43c6c-2f91-4bec-92e4-be52d8a1700f_wxs_gdc_realn.bam 41173151278 BAM harmonized CPTAC3 4dc0daaf-2a6d-4918-9f70-5592541eb194 4e4b98910c5e9d654f9deb028b333a56 {"aliquot_tag": "ALQ_e3e07ebd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03890.WXS.T C3N-03890 LUAD WXS tumor CPT0221310006 CPT0221310006.WholeExome.RP-1303.bam 21994802547 BAM submitted_aligned CPTAC3 97073996-e510-413e-9223-be2955d4839a 27f8db1d09bc7a33012b2488f6fe86fc {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03890.WXS.T.hg38 C3N-03890 LUAD WXS tumor CPT0221310006 c22848a6-7e18-4fde-9152-978dd5539380_wxs_gdc_realn.bam 29930381827 BAM harmonized CPTAC3 9b5f226b-2ff4-4eef-aba1-f9c3e8e16a73 e12ea3b99fcbc30dabb8d4979f5d96b2 {"aliquot_tag": "ALQ_80f485a9", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.MethArray.Green.A C3N-03911 LUAD Methylation_Array tissue_normal CPT0223640009 203561620091_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 580a0d43-9ffb-467c-9ae3-4c2820a1ad0c f6a3db1e48e751b7335af8544b52c05e {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.MethArray.Green.T C3N-03911 LUAD Methylation_Array tumor CPT0223610006 203561450017_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ad89f742-66fb-4071-814f-5f69e1b2b85d cf85722d15b59ae1ba895cbb521ba887 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.MethArray.Red.A C3N-03911 LUAD Methylation_Array tissue_normal CPT0223640009 203561620091_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 28dd0c30-e531-4b0c-b212-f426af14931c efe10c37514293f2c1b1fce08d070326 {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.MethArray.Red.T C3N-03911 LUAD Methylation_Array tumor CPT0223610006 203561450017_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 c35c9219-a2af-490f-b97d-0385649fcc79 5b7ef0c565705bb5d18c901a80ec2f20 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.miRNA-Seq.A.hg38 C3N-03911 LUAD miRNA-Seq tissue_normal CPT0223640006 a3bd6655-2ce2-4eb3-b10c-22dae5b754ce_mirnaseq_gdc_realn.bam 196498005 BAM harmonized CPTAC3 c16019cd-77c6-46fe-940d-fd5f367f5274 c3a14275cd78df840ff0fca0c9973d7f {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.miRNA-Seq.S14_L007_R1.A C3N-03911 LUAD miRNA-Seq tissue_normal CPT0223640006 190722_UNC31-K00269_0234_AH7VGTBBXY_GTCCGC_S14_L007_R1_001.unaln.bam 171833977 BAM S14_L007_R1 submitted_unaligned CPTAC3 647dcc2e-913b-4676-b47e-2af6c55f51ed e71c4033dc580ee69657fd566fb8a02c {"aliquot_tag": "ALQ_8f468a43", "sample": "S14", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.miRNA-Seq.S26_L004_R1.T C3N-03911 LUAD miRNA-Seq tumor CPT0223610009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACTCA_S26_L004_R1_001.unaln.bam 247283715 BAM S26_L004_R1 submitted_unaligned CPTAC3 ed3ef7be-8630-472b-9d30-d325b9c9bd62 242e6af4977e36fd2a685c8b752941b3 {"aliquot_tag": "ALQ_d71918a2", "sample": "S26", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.miRNA-Seq.T.hg38 C3N-03911 LUAD miRNA-Seq tumor CPT0223610009 ff2741b1-bd2d-4437-8421-629a53b19b6c_mirnaseq_gdc_realn.bam 278278728 BAM harmonized CPTAC3 6d83cd1b-ff37-437c-b330-84c557600d5e 8d0edd8c934a65d1ed3d50a624a640b9 {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.RNA-Seq.chimeric.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.chimeric.gdc_realn.bam 26028369 BAM chimeric harmonized CPTAC3 ed96b321-0dcf-42e2-821f-ffb726f355b5 49cb6f3bd78645da0ab53d4f13fd51c0 {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.RNA-Seq.chimeric.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.chimeric.gdc_realn.bam 40900399 BAM chimeric harmonized CPTAC3 f65dff08-8324-4cbd-a0d3-ec7862645d2b ac06477b83698cc833366edd1a83b059 {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.RNA-Seq.genomic.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.genomic.gdc_realn.bam 9529977879 BAM genomic harmonized CPTAC3 32da2cc3-b99f-4c09-8314-caf9d42fb28d e2a47ef5ccd1c620c0dec9563cd0e6d2 {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.RNA-Seq.genomic.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.genomic.gdc_realn.bam 14943562001 BAM genomic harmonized CPTAC3 40de78a4-3c9e-4488-bff6-556dddbb51d2 963bc9f78f5036811eca60b6ab9b605c {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.RNA-Seq.S28_L007_R1.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R1_001.fastq.gz 5205141169 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 98425bec-6e8e-4116-9059-200a44880bd3 17983b0086309b8aba0c74e1e067928f {"aliquot_tag": "ALQ_d71918a2", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.RNA-Seq.S28_L007_R2.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R2_001.fastq.gz 5733156960 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 ee3fa35f-834a-4a2e-be95-6700b485b7fd 9ce9586faa9d9c2e2a114d6d981f7ed7 {"aliquot_tag": "ALQ_d71918a2", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.RNA-Seq.S32_L008_R1.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R1_001.fastq.gz 3394815688 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 926f1f32-f11b-48f4-ba04-a70f3d66a3d6 f3073f51ac9033cfdc7f079b18807b16 {"aliquot_tag": "ALQ_8f468a43", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.RNA-Seq.S32_L008_R2.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R2_001.fastq.gz 3902481764 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 84fc593b-48ad-4e4b-bc97-9e6432fa21ea b73bd5c9b4dd722d0a64a689426c876d {"aliquot_tag": "ALQ_8f468a43", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.RNA-Seq.transcriptome.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.transcriptome.gdc_realn.bam 8022797660 BAM transcriptome harmonized CPTAC3 fb91c457-4fd7-4aab-8fc9-911dc15059ef 716cfc7c3e8fb7b40e5d1eebff5ceaca {"aliquot_tag": "ALQ_8f468a43", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.RNA-Seq.transcriptome.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.transcriptome.gdc_realn.bam 13067933414 BAM transcriptome harmonized CPTAC3 70592869-e23b-4c3e-b3e0-dfc023638a94 f1ca5cf59218b98065b6ed0e3de53f4b {"aliquot_tag": "ALQ_d71918a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.WGS.N C3N-03911 LUAD WGS blood_normal CPT0223730002 CPT0223730002.WholeGenome.RP-1303.bam 67350523077 BAM submitted_aligned CPTAC3 97bbd555-86dc-40c6-9cd0-c4c0628f1569 a299da55405fc8485ace67b36d3eac32 {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03911.WGS.N.hg38 C3N-03911 LUAD WGS blood_normal CPT0223730002 db2d715b-de33-4265-9e4f-6b6d06bbcf77_wgs_gdc_realn.bam 98466515208 BAM harmonized CPTAC3 42cd263e-ee58-4d10-bd75-8437810ef8db edde4b809a6876cdd30761cd37eeb362 {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03911.WGS.T C3N-03911 LUAD WGS tumor CPT0223610006 CPT0223610006.WholeGenome.RP-1303.bam 52525817199 BAM submitted_aligned CPTAC3 93735a47-615f-4744-a4a9-b4d847aa56a4 ca2a147d0eb8a36e4bfb98733d9e27a2 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.WGS.T.hg38 C3N-03911 LUAD WGS tumor CPT0223610006 cded8a7e-8a15-41a0-adbc-3816ad38d1a6_wgs_gdc_realn.bam 77637613042 BAM harmonized CPTAC3 514ce22b-f01c-445f-afd2-cb3e5732451e 45cc7cc2a84aa3bdcb7200a3f04fb48e {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.WXS.A C3N-03911 LUAD WXS tissue_normal CPT0223640009 CPT0223640009.WholeExome.RP-1303.bam 28060130026 BAM submitted_aligned CPTAC3 6cd48d71-280f-40a9-986e-f60bb04f8522 d23bf43a215f764d76345df95e580d62 {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.WXS.A.hg38 C3N-03911 LUAD WXS tissue_normal CPT0223640009 775b90da-d190-41e7-b19f-5d43d5dddc33_wxs_gdc_realn.bam 39107438454 BAM harmonized CPTAC3 d885c01b-958b-4ab0-97dc-b3b1d7905ad7 d06e31677969b6a321561473ac4a9c71 {"aliquot_tag": "ALQ_1ff997d2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03911.WXS.N C3N-03911 LUAD WXS blood_normal CPT0223730002 CPT0223730002.WholeExome.RP-1303.bam 27710530135 BAM submitted_aligned CPTAC3 5a49e65f-800f-4f0f-a5c0-bf1e9b83147f 1687460c70eb6c2eccb6ef5e0ece91b6 {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03911.WXS.N.hg38 C3N-03911 LUAD WXS blood_normal CPT0223730002 db2d715b-de33-4265-9e4f-6b6d06bbcf77_wxs_gdc_realn.bam 38178162479 BAM harmonized CPTAC3 9c23156c-40b6-490b-a21f-6af4d6646f89 9a6598f1f87515692ddbeb2c8b7c819f {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03911.WXS.T C3N-03911 LUAD WXS tumor CPT0223610006 CPT0223610006.WholeExome.RP-1303.bam 30791088843 BAM submitted_aligned CPTAC3 66ce1f69-24e8-4ea9-90f0-7bcbbe426d3f 299ec3d5326f917b29d1bb238bb7cd38 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03911.WXS.T.hg38 C3N-03911 LUAD WXS tumor CPT0223610006 cded8a7e-8a15-41a0-adbc-3816ad38d1a6_wxs_gdc_realn.bam 41580983977 BAM harmonized CPTAC3 d591f52c-a038-45c5-967a-d21e5e0512b0 87bdc8c20a50d18abc520876d12857ca {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.MethArray.Green.A C3N-03921 LUAD Methylation_Array tissue_normal CPT0223280006 203561620064_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 6b081f18-298b-43b8-9742-bf971330da06 0278a1ec04760958ff43bd97c49f016a {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.MethArray.Green.T C3N-03921 LUAD Methylation_Array tumor CPT0223260006 203561450018_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c094bec8-9c06-44df-8826-d7051b8185b2 1f681b80b8821e8c29ced8d308184d51 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.MethArray.Red.A C3N-03921 LUAD Methylation_Array tissue_normal CPT0223280006 203561620064_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 ab1fc338-7329-4011-a469-f565c66b2204 9edae40fc67947a9797bcfc02af676cb {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.MethArray.Red.T C3N-03921 LUAD Methylation_Array tumor CPT0223260006 203561450018_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 1d3ce52a-4940-4044-b5f9-a1141545cad4 d8e99841e6d48c291ef31e53a12cf8ea {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.miRNA-Seq.A.hg38 C3N-03921 LUAD miRNA-Seq tissue_normal CPT0223280009 eb98f7d1-d002-46b3-8276-1fac3538f6c1_mirnaseq_gdc_realn.bam 290854687 BAM harmonized CPTAC3 b4209503-995c-4572-82d9-684fbc338b21 8cf4866d03900d16f63eef61053c83c2 {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.miRNA-Seq.S13_L007_R1.T C3N-03921 LUAD miRNA-Seq tumor CPT0223260009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTAGAG_S13_L007_R1_001.unaln.bam 178601708 BAM S13_L007_R1 submitted_unaligned CPTAC3 4a37b01b-4ddb-4431-9eec-f20c9fe54824 dd17325589c1b2465a0b26def2b1adbe {"aliquot_tag": "ALQ_fea886a4", "sample": "S13", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.miRNA-Seq.S42_L005_R1.A C3N-03921 LUAD miRNA-Seq tissue_normal CPT0223280009 190722_UNC31-K00269_0234_AH7VGTBBXY_CGATGT_S42_L005_R1_001.unaln.bam 259657420 BAM S42_L005_R1 submitted_unaligned CPTAC3 7b4190b1-0fa7-4ac3-8816-43568a603dd1 232942681ec6d0c7ca1a82c96c50a327 {"aliquot_tag": "ALQ_419838c5", "sample": "S42", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.miRNA-Seq.T.hg38 C3N-03921 LUAD miRNA-Seq tumor CPT0223260009 bb417eb3-e59d-44ed-a7a9-6294c94c4a69_mirnaseq_gdc_realn.bam 196094028 BAM harmonized CPTAC3 a7988fb9-65fe-4623-83af-ce689c458ed5 947f24bcf9d461b2855d9a862cd4e94a {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.RNA-Seq.chimeric.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.chimeric.gdc_realn.bam 44027776 BAM chimeric harmonized CPTAC3 6bca6c95-cc4c-48da-9354-7d1e2d4a6925 7d4bcca24c8d948e2b1dd21da858e7cc {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.RNA-Seq.chimeric.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.chimeric.gdc_realn.bam 35423904 BAM chimeric harmonized CPTAC3 1ff55b2f-23f7-44b6-a1c6-ec92549e44ee 6044223f1c28395fec2408eb3300e866 {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.RNA-Seq.genomic.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.genomic.gdc_realn.bam 13407903930 BAM genomic harmonized CPTAC3 3d77009d-409b-45f0-8d5f-5cdcbe7a4c0f 986495fd3f6f1ee01f65f704f7e3f259 {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.RNA-Seq.genomic.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.genomic.gdc_realn.bam 12501241921 BAM genomic harmonized CPTAC3 e3dee240-24d4-4a74-b23b-7d36f86cbfae e007aff8f38403ed74b1284288fcbf4e {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.RNA-Seq.S22_L006_R1.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R1_001.fastq.gz 4759625511 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 367ab8a5-931b-41d4-9144-ae59e09b9c0a 972900174e5c4c17356a868e26d81596 {"aliquot_tag": "ALQ_419838c5", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.RNA-Seq.S22_L006_R2.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R2_001.fastq.gz 4906699320 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 77fac69d-a38b-4b26-8928-d9385eae7070 e90dab656fbac7b34a002ec76fd70a9e {"aliquot_tag": "ALQ_419838c5", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.RNA-Seq.S31_L008_R1.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R1_001.fastq.gz 4740602776 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 7881cf5e-17a2-412c-ad03-c1738c003666 ee69d2111bd851c723ef43a41e624fae {"aliquot_tag": "ALQ_fea886a4", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.RNA-Seq.S31_L008_R2.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R2_001.fastq.gz 5200451436 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 1b90d3b5-254f-4f2e-83b2-aa2d5cd5d654 1ce0915f56da3450cd8cbb0c948a900a {"aliquot_tag": "ALQ_fea886a4", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.RNA-Seq.transcriptome.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.transcriptome.gdc_realn.bam 9788432401 BAM transcriptome harmonized CPTAC3 c2878bde-0da1-4458-871e-3978886c8715 aec05eae1bc6c3803c8e2e649c7226a4 {"aliquot_tag": "ALQ_419838c5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.RNA-Seq.transcriptome.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.transcriptome.gdc_realn.bam 10869984062 BAM transcriptome harmonized CPTAC3 f39d42fe-9006-49ad-b54b-c560c918b8ca 91b050c8ff48e34eaa1465353cb6a5d3 {"aliquot_tag": "ALQ_fea886a4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.WGS.N C3N-03921 LUAD WGS blood_normal CPT0223370002 CPT0223370002.WholeGenome.RP-1303.bam 57889869359 BAM submitted_aligned CPTAC3 c5069d8b-dc94-4176-b2ec-78c98c0f9efa 7e9bb5ad60f1c6d8dad633a9b3c98d93 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03921.WGS.N.hg38 C3N-03921 LUAD WGS blood_normal CPT0223370002 999fc728-4e24-4737-9daf-55eb19ded472_wgs_gdc_realn.bam 82731236019 BAM harmonized CPTAC3 e35a5b94-ed10-489e-81eb-fe73e8229013 5169e9b5d0e09d42f297a30da19be599 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03921.WGS.T C3N-03921 LUAD WGS tumor CPT0223260006 CPT0223260006.WholeGenome.RP-1303.bam 70561800278 BAM submitted_aligned CPTAC3 420b4a4a-4d81-406b-8eea-b5276fd7a58c 66bcac0fb03387fcfbb510b3d708d2db {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.WGS.T.hg38 C3N-03921 LUAD WGS tumor CPT0223260006 56ede771-6ddf-4dd2-9672-f93767b5a999_wgs_gdc_realn.bam 103196870105 BAM harmonized CPTAC3 be3f4887-19e5-4dea-8d27-ec6c573d5571 70a96e36d412ba3aae3369a1b1a78171 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.WXS.A C3N-03921 LUAD WXS tissue_normal CPT0223280006 CPT0223280006.WholeExome.RP-1303.bam 17595055772 BAM submitted_aligned CPTAC3 618dd0f3-99d6-4c41-8592-099eeadbf8d6 eb431723f2e9a209be2d6f7d23b3836b {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.WXS.A.hg38 C3N-03921 LUAD WXS tissue_normal CPT0223280006 6756ff0a-8cd7-4aba-8314-c455596b6261_wxs_gdc_realn.bam 24286975574 BAM harmonized CPTAC3 a1aef3de-7470-4407-a44d-6fb1183671a4 a9fdfe9fab62a0f6b9c3e494268c966f {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03921.WXS.N C3N-03921 LUAD WXS blood_normal CPT0223370002 CPT0223370002.WholeExome.RP-1303.bam 29183959659 BAM submitted_aligned CPTAC3 85e1e682-7133-4edc-a10f-5884057c39fc e6827a27a6006f845de7294c905311a2 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03921.WXS.N.hg38 C3N-03921 LUAD WXS blood_normal CPT0223370002 999fc728-4e24-4737-9daf-55eb19ded472_wxs_gdc_realn.bam 40314924869 BAM harmonized CPTAC3 9a4642cf-f64a-4d95-9593-2dbeb3aeca4d b86fef293698ff44d7077537f462df85 {"aliquot_tag": "ALQ_9f46a539", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03921.WXS.T C3N-03921 LUAD WXS tumor CPT0223260006 CPT0223260006.WholeExome.RP-1303.bam 21567516235 BAM submitted_aligned CPTAC3 8261d0d6-7719-486e-b781-b035d14ec16e 323675b40d0fe3d0f9062b348584a054 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03921.WXS.T.hg38 C3N-03921 LUAD WXS tumor CPT0223260006 56ede771-6ddf-4dd2-9672-f93767b5a999_wxs_gdc_realn.bam 29769490833 BAM harmonized CPTAC3 1418c58e-bf2c-43ad-9dfb-25559a91637c 4b6273ed97183b0158d41f315f3e3687 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03923.MethArray.Green.A C3N-03923 LSCC Methylation_Array tissue_normal CPT0256410006 204372030072_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 89a36f19-defd-4b12-a325-fa0e083bd6b1 af9fe48736f372d90e5a4ee5ea411e3b {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.MethArray.Green.T C3N-03923 LSCC Methylation_Array tumor CPT0256400006 204372030071_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 1dc256e4-9e4c-4b14-a58a-4c0925813608 077d8963b1d777a3648cbb364ab66651 {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.MethArray.Red.A C3N-03923 LSCC Methylation_Array tissue_normal CPT0256410006 204372030072_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 5a897a9c-2417-42e5-a391-ba9a0224d4b7 b3cda4f87822b3f5de62abcafab67a4e {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.MethArray.Red.T C3N-03923 LSCC Methylation_Array tumor CPT0256400006 204372030071_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 f06641c6-cb4f-40b2-9156-d43d7aa64d03 dbcaa087f2172c63380c0f8518080e40 {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.miRNA-Seq.A.hg38 C3N-03923 LSCC miRNA-Seq tissue_normal CPT0256410009 e3adc27c-befd-4dd9-bcdd-ab2f292f450b_mirnaseq_gdc_realn.bam 289685102 BAM harmonized CPTAC3 adbb2fb7-5245-4239-ad48-470a581284e0 d581b416706bd97cd0b6054a9ef8bbd8 {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.miRNA-Seq.S15_L007_R1.A C3N-03923 LSCC miRNA-Seq tissue_normal CPT0256410009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGCTAC_S15_L007_R1_001.unaln.bam 255275659 BAM S15_L007_R1 submitted_unaligned CPTAC3 f09f422a-3c94-4a5e-b207-6cb65a08eb3c 782ccc0c4c050817b562975a66fc0960 {"aliquot_tag": "ALQ_c22c9f17", "sample": "S15", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.miRNA-Seq.S19_L007_R1.T C3N-03923 LSCC miRNA-Seq tumor CPT0256400013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGAAA_S19_L007_R1_001.unaln.bam 229732290 BAM S19_L007_R1 submitted_unaligned CPTAC3 5cf50621-f395-4671-aafe-515f039a7b4f e83c931c872e86048e8c487f11c06fef {"aliquot_tag": "ALQ_6826ef8", "sample": "S19", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.miRNA-Seq.T.hg38 C3N-03923 LSCC miRNA-Seq tumor CPT0256400013 6e4d0579-0295-48b1-af3c-b7b5279a15af_mirnaseq_gdc_realn.bam 257360022 BAM harmonized CPTAC3 a4545431-007f-4335-a7bb-ea1fde57573f 0b4e31eab37ab0d08393306c030e2ed4 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.RNA-Seq.chimeric.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.chimeric.gdc_realn.bam 81573846 BAM chimeric harmonized CPTAC3 238af855-75f5-4e54-a402-78e089387245 215b926eb820f448c5492907f5b40272 {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.RNA-Seq.chimeric.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.chimeric.gdc_realn.bam 111146283 BAM chimeric harmonized CPTAC3 c08c09d4-236d-4c7c-a381-5b3b9f2de70b ea042a13261497be523c60fc04b00448 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.RNA-Seq.genomic.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.genomic.gdc_realn.bam 6717430392 BAM genomic harmonized CPTAC3 d98f530d-a7de-40b5-9dda-a279b75c0ef0 2dc8cbdb718bccdc608d99e80e7fe241 {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.RNA-Seq.genomic.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.genomic.gdc_realn.bam 8648889274 BAM genomic harmonized CPTAC3 090c845c-1364-4801-96a8-d4c2a4e5e2bf 69d18f76fb171f5bbb516e078353b1a8 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.RNA-Seq.S11_L003_R1.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R1_001.fastq.gz 3205216925 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 57455e4c-b3e0-42e8-b777-7b62a4e7ee1c 7dc25e8c92dd7a54632ac0b94140a9d4 {"aliquot_tag": "ALQ_c22c9f17", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.RNA-Seq.S11_L003_R2.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R2_001.fastq.gz 3557318303 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 cbbe8629-44f7-4ad4-9386-0070b1995efe c103a56b60614a8574aac694649a040c {"aliquot_tag": "ALQ_c22c9f17", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.RNA-Seq.S20_L005_R1.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4258161393 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 1472ec3e-ccbe-4215-96fe-fed9126c9492 f84f508a8faae228e311adc5d94643bc {"aliquot_tag": "ALQ_6826ef8", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.RNA-Seq.S20_L005_R2.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4751061138 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 b0051816-8cfc-4fc9-bff8-e02a112a6740 bf076ecb443ecf800cb547b430234ec8 {"aliquot_tag": "ALQ_6826ef8", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.RNA-Seq.transcriptome.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.transcriptome.gdc_realn.bam 8327787486 BAM transcriptome harmonized CPTAC3 2d88c119-6a4a-4887-8117-886f1cd8e29e 9ee17e87f10a9ddadcb1a3d864b7c59e {"aliquot_tag": "ALQ_c22c9f17", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.RNA-Seq.transcriptome.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.transcriptome.gdc_realn.bam 10204617976 BAM transcriptome harmonized CPTAC3 464a1c8e-b3c2-40ed-8c8d-10311c2b7271 15497f7b34dff25c1a3dbf6b849570f4 {"aliquot_tag": "ALQ_6826ef8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.WGS.N C3N-03923 LSCC WGS blood_normal CPT0256500002 CPT0256500002.WholeGenome.RP-2158.bam 22952793307 BAM submitted_aligned CPTAC3 c1e957ff-ee81-4d7f-bc37-674de50806bc 9132c33222f896c8f20e05a1639de98e {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03923.WGS.N.hg38 C3N-03923 LSCC WGS blood_normal CPT0256500002 5b4a4a97-1ca6-43c7-ae59-d4de15fcbd74_wgs_gdc_realn.bam 68819258297 BAM harmonized CPTAC3 d0933bbc-e62a-41b2-bd12-be1d63e53836 33d4e4f4bdfbcbfc62cd696e0ca787f8 {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03923.WGS.T C3N-03923 LSCC WGS tumor CPT0256400006 CPT0256400006.WholeGenome.RP-2158.bam 22798062723 BAM submitted_aligned CPTAC3 94131131-3a7c-437c-ac22-997e893751c2 08f681135fd003c5134499bb6b6b50ab {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.WGS.T.hg38 C3N-03923 LSCC WGS tumor CPT0256400006 3df344f8-a667-4995-baf0-ea7725ad0ea9_wgs_gdc_realn.bam 67557684957 BAM harmonized CPTAC3 fdf76f02-3f94-4907-964d-b082cbb0af56 7a394152ec35ead3f64c4fb6c0f9320d {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.WXS.A C3N-03923 LSCC WXS tissue_normal CPT0256410006 CPT0256410006.WholeExome.RP-1303.bam 22572298048 BAM submitted_aligned CPTAC3 7d1cae39-ab67-4d63-86a1-cb25aecccbb5 03acd97467bd94003e1cbc61737f94ec {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.WXS.A.hg38 C3N-03923 LSCC WXS tissue_normal CPT0256410006 4b5d3a39-6385-4946-86fb-0260a4d48d78_wxs_gdc_realn.bam 31514324064 BAM harmonized CPTAC3 1174bc58-daaf-4750-aa3d-98ddd7a57475 5c72567fd99063811ec610e2612a1029 {"aliquot_tag": "ALQ_52938286", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03923.WXS.N C3N-03923 LSCC WXS blood_normal CPT0256500002 CPT0256500002.WholeExome.RP-1303.bam 26709559638 BAM submitted_aligned CPTAC3 d95b9ef8-98af-4dd9-8ad6-8f8964706d29 89b814a464c1a25dd3ea78e87815f337 {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03923.WXS.N.hg38 C3N-03923 LSCC WXS blood_normal CPT0256500002 5b4a4a97-1ca6-43c7-ae59-d4de15fcbd74_wxs_gdc_realn.bam 36096282529 BAM harmonized CPTAC3 f3455f5c-25a4-4fa3-bbfa-43bb9acec2f0 be44d73d297fa92b371f280c872aa940 {"aliquot_tag": "ALQ_a3c2bc8a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03923.WXS.T C3N-03923 LSCC WXS tumor CPT0256400006 CPT0256400006.WholeExome.RP-1303.bam 25512003165 BAM submitted_aligned CPTAC3 849427c8-f58f-4ee0-98e3-b2ae43f8179e 8129b25534331b40c6ccb109a70d6794 {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03923.WXS.T.hg38 C3N-03923 LSCC WXS tumor CPT0256400006 3df344f8-a667-4995-baf0-ea7725ad0ea9_wxs_gdc_realn.bam 35363917034 BAM harmonized CPTAC3 614f6f2f-f729-4528-ac6e-1fb1df9c2267 e855b699e90960246302bd9f93ff855e {"aliquot_tag": "ALQ_6ff3ab36", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03928.MethArray.Green.A C3N-03928 HNSCC Methylation_Array tissue_normal CPT0223460006 203220070102_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 0bfa815b-fc94-4834-9efd-279e0129fec6 624cbcf3ec9cbe8ccdb5f0f743fce6df {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.MethArray.Green.T C3N-03928 HNSCC Methylation_Array tumor CPT0223450006 203273200110_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 74496499-c1c8-43d0-b15c-0943dea120b2 153bea1be2ff9cbdc1193c33218d5a4e {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.MethArray.Red.A C3N-03928 HNSCC Methylation_Array tissue_normal CPT0223460006 203220070102_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 07557c2c-b92c-4f9a-8417-5cb3ce6df372 22924998508f36f11605d62d14e5f9e7 {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.MethArray.Red.T C3N-03928 HNSCC Methylation_Array tumor CPT0223450006 203273200110_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 2b0b7dfe-d652-4747-841d-9bac98c23be8 ee176fd47ed36c4f84031dda04424997 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.miRNA-Seq.A.hg38 C3N-03928 HNSCC miRNA-Seq tissue_normal CPT0223460009 872fb158-087c-4c4f-ab76-91b7fe4d34df_mirnaseq_gdc_realn.bam 227418641 BAM harmonized CPTAC3 be6c74d0-de04-455e-a675-09bd3b90cdb4 d02b4aebb70b88006df0c4e50495d5b4 {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.miRNA-Seq.S12_L005_R1.A C3N-03928 HNSCC miRNA-Seq tissue_normal CPT0223460009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L005_R1_001.unaln.bam 196630361 BAM S12_L005_R1 submitted_unaligned CPTAC3 7015611f-ef8f-453e-82e5-41b06e620714 969b21b28cabfa91546942f328668bd8 {"aliquot_tag": "ALQ_28f165b9", "sample": "S12", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.miRNA-Seq.S28_L004_R1.T C3N-03928 HNSCC miRNA-Seq tumor CPT0223450009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L004_R1_001.unaln.bam 209255730 BAM S28_L004_R1 submitted_unaligned CPTAC3 f07e9d37-38ad-437c-bc1b-d44e00a705f6 548ea5cc520bc42636925779a99b0086 {"aliquot_tag": "ALQ_6f511f69", "sample": "S28", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.miRNA-Seq.T.hg38 C3N-03928 HNSCC miRNA-Seq tumor CPT0223450009 e740f8e4-61be-4c70-82b6-5bd6255dbb68_mirnaseq_gdc_realn.bam 231339187 BAM harmonized CPTAC3 081fd7ec-e69d-4f37-9daa-e83d00b6b672 5fc5420c801011ffa9ce31683733471f {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.chimeric.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.chimeric.gdc_realn.bam 43989295 BAM chimeric harmonized CPTAC3 e3171348-b14c-45a2-8523-d6ca26b7b916 233004d359356919f1b9178d1292cdd2 {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.RNA-Seq.chimeric.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.chimeric.gdc_realn.bam 213902410 BAM chimeric harmonized CPTAC3 76ae54cd-86e2-4937-aad3-f90e0f0ae25b a22b54d8007713ff2d3bbb2548b8c2ba {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.chimeric.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.chimeric.gdc_realn.bam 6854951 BAM chimeric harmonized CPTAC3 ff1405a8-916a-436d-a6aa-d73e1018359b 35de8a786424ec2e745f9c4654828b73 {"aliquot_tag": "ALQ_bd614b1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.genomic.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.genomic.gdc_realn.bam 8542541691 BAM genomic harmonized CPTAC3 0d8ed636-a303-4fcc-9bba-eec95d558e16 c417f464de43e0416f603c1bb22c03fd {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.RNA-Seq.genomic.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.genomic.gdc_realn.bam 8153597747 BAM genomic harmonized CPTAC3 6529a0cd-9bef-48a2-b94b-a19a5c878119 740d1976e038d29d5abcda4948d36451 {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.genomic.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.genomic.gdc_realn.bam 5238124945 BAM genomic harmonized CPTAC3 93748b45-89d1-4f0c-8250-24d3367a0389 53d8031938205388f913acd18c047394 {"aliquot_tag": "ALQ_bd614b1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.S16_L004_R1.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3837025506 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 0176e888-4ebb-4a42-b6a4-67c44c5fb1c8 d17bc447e8808d00dbd3b1e8cb8eb47f {"aliquot_tag": "ALQ_6f511f69", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.S16_L004_R2.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R2_001.fastq.gz 4113640477 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 1a65fad3-3abe-471c-814d-e5857ef2953f db3233c6e3c50e8c77fba7ee3850c960 {"aliquot_tag": "ALQ_6f511f69", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.S16_R1.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R1_001.fastq.gz 2525598438 FASTQ S16_R1 submitted_unaligned CPTAC3 a05c6296-f275-4d3e-a4d8-80fdfaf285a4 81fe16bda6e7668c2a0ef7e032e17527 {"aliquot_tag": "ALQ_bd614b1b", "sample": "S16", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.S16_R2.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R2_001.fastq.gz 2612357568 FASTQ S16_R2 submitted_unaligned CPTAC3 0a5db27b-544d-478c-9328-80f8a8d6bffc c10bdcd90ddf9cc7354c01cf2e742c8b {"aliquot_tag": "ALQ_bd614b1b", "sample": "S16", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.S24_L005_R1.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R1_001.fastq.gz 4139135637 FASTQ S24_L005_R1 submitted_unaligned CPTAC3 47a58947-9f20-4cb8-9b63-3592510547d2 586b748c1ee8d907d4d84c0f067a1507 {"aliquot_tag": "ALQ_28f165b9", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.RNA-Seq.S24_L005_R2.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R2_001.fastq.gz 4660118469 FASTQ S24_L005_R2 submitted_unaligned CPTAC3 a09dca26-cf2b-4011-9547-39040fa13483 1860e4760d7c3b36c49db75d9a21b553 {"aliquot_tag": "ALQ_28f165b9", "sample": "S24", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.RNA-Seq.transcriptome.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.transcriptome.gdc_realn.bam 12563867397 BAM transcriptome harmonized CPTAC3 323a0cdb-027b-40fc-b7ae-0bddd2ec541b 5fc97b397edda29959afb278e0ef1d5c {"aliquot_tag": "ALQ_28f165b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.RNA-Seq.transcriptome.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.transcriptome.gdc_realn.bam 11147226211 BAM transcriptome harmonized CPTAC3 520aa9ac-ee05-426e-b4f6-f85470552268 7ce63b085117437dc78181ebc76c5cdf {"aliquot_tag": "ALQ_6f511f69", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.RNA-Seq.transcriptome.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.transcriptome.gdc_realn.bam 4135179406 BAM transcriptome harmonized CPTAC3 142f4c1a-dc84-47e1-b934-bb4e566ccadb 2d4ca23abdca0b1452d323fdb2a5caaf {"aliquot_tag": "ALQ_bd614b1b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.WGS.N C3N-03928 HNSCC WGS blood_normal CPT0223550002 CPT0223550002.WholeGenome.RP-1303.bam 63920687389 BAM submitted_aligned CPTAC3 e53b0336-cc04-4e09-9e65-20f6f7920980 bbe2d3c4421a108074f35c7d0eb9bdbc {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03928.WGS.N.hg38 C3N-03928 HNSCC WGS blood_normal CPT0223550002 d52c7050-d9d6-4c27-941d-49f3c0986bc7_wgs_gdc_realn.bam 91894127964 BAM harmonized CPTAC3 3b342f53-0196-4733-b37b-74d26d87db26 2e88298d309f7989a45c535d87fa9dc2 {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03928.WGS.T C3N-03928 HNSCC WGS tumor CPT0223450006 CPT0223450006.WholeGenome.RP-1303.bam 83995772319 BAM submitted_aligned CPTAC3 1956ec9f-f220-4486-b2f5-847f977d3b2e b407f1bf64cc6acb13b953b39f5648d3 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.WGS.T.hg38 C3N-03928 HNSCC WGS tumor CPT0223450006 fc99dc77-db87-43ef-b266-6becf5869734_wgs_gdc_realn.bam 126290974495 BAM harmonized CPTAC3 7199f9f9-dd7f-4af7-b471-09fd580fb125 c8d33e0db690633fd0fb3b92372528b4 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.WXS.A C3N-03928 HNSCC WXS tissue_normal CPT0223460006 CPT0223460006.WholeExome.RP-1303.bam 40235827139 BAM submitted_aligned CPTAC3 2d06eac9-88d9-4ee6-ab63-5cdcd18c9c1d 08a7254630a8a0606a9c37ad183a3258 {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.WXS.A.hg38 C3N-03928 HNSCC WXS tissue_normal CPT0223460006 4b727f9a-29bf-4d64-831f-df8120917efe_wxs_gdc_realn.bam 56097963253 BAM harmonized CPTAC3 04701dc7-6330-4b7f-a8d3-1f15d2a7168b 4d71288f1cad76b3068abf71a2dd7af9 {"aliquot_tag": "ALQ_b84e7828", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03928.WXS.N C3N-03928 HNSCC WXS blood_normal CPT0223550002 CPT0223550002.WholeExome.RP-1303.bam 20817807563 BAM submitted_aligned CPTAC3 d487fef9-7e4b-471a-b2f7-f97b915b4b95 806f9177eda74bdf2cd94ece05f26c19 {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03928.WXS.N.hg38 C3N-03928 HNSCC WXS blood_normal CPT0223550002 d52c7050-d9d6-4c27-941d-49f3c0986bc7_wxs_gdc_realn.bam 28568849149 BAM harmonized CPTAC3 889badd3-da9b-4f72-8682-a2cca8f38106 866054967eca6330efbcfdcd0fc59e70 {"aliquot_tag": "ALQ_33df1544", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03928.WXS.T C3N-03928 HNSCC WXS tumor CPT0223450006 CPT0223450006.WholeExome.RP-1303.bam 25583853036 BAM submitted_aligned CPTAC3 18bd0fbf-3f94-4e84-92d8-da217078c126 c25e7b4adae051a1ed987fe1bf3ca0f6 {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03928.WXS.T.hg38 C3N-03928 HNSCC WXS tumor CPT0223450006 fc99dc77-db87-43ef-b266-6becf5869734_wxs_gdc_realn.bam 35330025423 BAM harmonized CPTAC3 3f12c588-a639-464d-bb1c-96ec49a307a0 ab78e8a2e985216188dc0d68390a345c {"aliquot_tag": "ALQ_ffee02f8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.MethArray.Green.A C3N-03929 LUAD Methylation_Array tissue_normal CPT0219930006 203561620054_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 90652092-ee88-436f-8ff1-f2f327938598 c6bb5dd93cf9ce21298f5243562a93b9 {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.MethArray.Green.T C3N-03929 LUAD Methylation_Array tumor CPT0219780006 203273630258_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f14aa4a0-5168-46e3-bfb5-c06ca9ba9270 293db2f4f220d82e200c1aa836a57abb {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.MethArray.Red.A C3N-03929 LUAD Methylation_Array tissue_normal CPT0219930006 203561620054_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 3eab7c98-38ed-4b50-8a4c-ea7292426fe0 43fae5b250eba76c535089f966534314 {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.MethArray.Red.T C3N-03929 LUAD Methylation_Array tumor CPT0219780006 203273630258_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 4466050f-1a19-4826-ad1d-1ca44806bb6d 1e6b09555d108364892ab38cdc806427 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.miRNA-Seq.A.hg38 C3N-03929 LUAD miRNA-Seq tissue_normal CPT0219930009 d7b9db56-9d50-4f58-bc1d-af1631e7e3c5_mirnaseq_gdc_realn.bam 199214581 BAM harmonized CPTAC3 dc47d7fa-e22a-452d-b738-93583699ea2f 24035945e92996fe0d59a43558d14ce8 {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.miRNA-Seq.S10_L007_R1.T C3N-03929 LUAD miRNA-Seq tumor CPT0219780009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTTCC_S10_L007_R1_001.unaln.bam 208737992 BAM S10_L007_R1 submitted_unaligned CPTAC3 438ae58a-ea72-473c-916e-60882368e16b 664547cb230415431b9c32c1e57fb5c1 {"aliquot_tag": "ALQ_3baaf1db", "sample": "S10", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.miRNA-Seq.S29_L006_R1.A C3N-03929 LUAD miRNA-Seq tissue_normal CPT0219930009 190722_UNC31-K00269_0234_AH7VGTBBXY_CATTTT_S29_L006_R1_001.unaln.bam 180874218 BAM S29_L006_R1 submitted_unaligned CPTAC3 9d729d4c-9993-4342-a21e-2167b412434e 2f50f057f59ecae4ce53088cb6e32353 {"aliquot_tag": "ALQ_7670a1ba", "sample": "S29", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.miRNA-Seq.T.hg38 C3N-03929 LUAD miRNA-Seq tumor CPT0219780009 6382bc10-de64-4d2b-aa81-7c16183a8d3f_mirnaseq_gdc_realn.bam 229689056 BAM harmonized CPTAC3 3ae761bb-1948-4697-8d4a-56f6ea6668ec 7c65097f591964dee5005924e49a33b3 {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.RNA-Seq.chimeric.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.chimeric.gdc_realn.bam 32802395 BAM chimeric harmonized CPTAC3 bba6577c-15aa-4e26-9f27-2f2bbeb637c7 c1d075b43d5b9f1d7615c56271209b2e {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.RNA-Seq.chimeric.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.chimeric.gdc_realn.bam 33051238 BAM chimeric harmonized CPTAC3 d9de789c-8986-4d4e-af00-b047c37b321d 54d634de485f8508d699923b1ccb97fe {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.RNA-Seq.genomic.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.genomic.gdc_realn.bam 9909479026 BAM genomic harmonized CPTAC3 f87f47da-9b0f-4d11-a0dc-cad9bce7f6c1 adbcd7e82636befe76050f19a94c63d3 {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.RNA-Seq.genomic.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.genomic.gdc_realn.bam 11832520823 BAM genomic harmonized CPTAC3 8bf2d0ce-0958-4e71-a9d2-67b7aa102ebb 449be1115390b47dc3443f470fe18c66 {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.RNA-Seq.S4_L001_R1.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3944633762 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 797bc491-d17f-42f7-b207-69f734412c7a ae52ca5a6f48818298e761336cd5ff32 {"aliquot_tag": "ALQ_7670a1ba", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.RNA-Seq.S4_L001_R1.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R1_001.fastq.gz 4400507914 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 b378549b-9541-4f47-915b-1ea031f34aff 19047ab113c169916705098ffbef3891 {"aliquot_tag": "ALQ_3baaf1db", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.RNA-Seq.S4_L001_R2.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 4469374292 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 dba50817-cfc3-4aa9-8fb4-0fa6c0cba16f 2f76ccb006f0cbe8dc8347c889e41041 {"aliquot_tag": "ALQ_7670a1ba", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.RNA-Seq.S4_L001_R2.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R2_001.fastq.gz 5003271371 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 b2b0d389-b8e7-4131-b5c7-2c812b0a75c1 087b95654bf2f8f53a65c0d7120885f5 {"aliquot_tag": "ALQ_3baaf1db", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.RNA-Seq.transcriptome.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.transcriptome.gdc_realn.bam 8205895863 BAM transcriptome harmonized CPTAC3 cf3d406c-d166-4d53-8cd5-455bc2358eec cb76a6578bb01eb6c2a11e6e1a84439c {"aliquot_tag": "ALQ_7670a1ba", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.RNA-Seq.transcriptome.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.transcriptome.gdc_realn.bam 10548857985 BAM transcriptome harmonized CPTAC3 0239e5b8-a659-40d9-aaf9-e0a0ccee09b3 20521a8880326873f88a38a4c3f966c9 {"aliquot_tag": "ALQ_3baaf1db", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.WGS.N C3N-03929 LUAD WGS blood_normal CPT0220060002 CPT0220060002.WholeGenome.RP-1303.bam 66045742511 BAM submitted_aligned CPTAC3 dea67ad2-b27c-42a6-8219-70782be114ff d447b783ebc363564987e164d8bfafa3 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03929.WGS.N.hg38 C3N-03929 LUAD WGS blood_normal CPT0220060002 6844c215-74c9-4279-92a7-7bd760aedaf2_wgs_gdc_realn.bam 96353498289 BAM harmonized CPTAC3 ddfdbe51-fc93-411d-be38-da554a7cef3d dcd7c1fed2f1f3460d3566ed03288747 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03929.WGS.T C3N-03929 LUAD WGS tumor CPT0219780006 CPT0219780006.WholeGenome.RP-1303.bam 72014353249 BAM submitted_aligned CPTAC3 04b6c73c-4bc1-4f06-8921-88d0564dda86 235b0364c3d9f544acb4ec026d9c9915 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.WGS.T.hg38 C3N-03929 LUAD WGS tumor CPT0219780006 ade1d469-d5fa-4a53-8646-e4f88e52bd4c_wgs_gdc_realn.bam 105345369883 BAM harmonized CPTAC3 f8417132-d56e-41aa-9abc-b6e1a0a674b8 2dc0913be4e8caf490d0b4bb25bb2d21 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.WXS.A C3N-03929 LUAD WXS tissue_normal CPT0219930006 CPT0219930006.WholeExome.RP-1303.bam 25910667292 BAM submitted_aligned CPTAC3 a0d2e6ba-2d6f-4de5-95e8-d3b117c9ce5e 306d7122b59ede04dfec5592732f69be {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.WXS.A.hg38 C3N-03929 LUAD WXS tissue_normal CPT0219930006 29335597-d074-4934-91d9-8e5dca38d848_wxs_gdc_realn.bam 35632720615 BAM harmonized CPTAC3 3b5790a9-8384-48c6-9aa4-c741c9c3b53b 85100ced26f63fa527fefe0a4078d0f2 {"aliquot_tag": "ALQ_e6cfbc2b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03929.WXS.N C3N-03929 LUAD WXS blood_normal CPT0220060002 CPT0220060002.WholeExome.RP-1303.bam 24534787038 BAM submitted_aligned CPTAC3 00277cbe-84c1-47bf-9703-5c546d2b1364 fc5e1bf46ff7a6d28a5da3cce6897cc0 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03929.WXS.N.hg38 C3N-03929 LUAD WXS blood_normal CPT0220060002 6844c215-74c9-4279-92a7-7bd760aedaf2_wxs_gdc_realn.bam 33169072160 BAM harmonized CPTAC3 e07a1156-b814-47cd-8e18-e8624e1dab2f 3b9d6a8c42a3269f2d6e8ec78b2af868 {"aliquot_tag": "ALQ_155ae4ba", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03929.WXS.T C3N-03929 LUAD WXS tumor CPT0219780006 CPT0219780006.WholeExome.RP-1303.bam 22897638486 BAM submitted_aligned CPTAC3 b8055775-7b1e-45ca-a966-49fbb0f98a53 77ed8790cd97461046bb4d5b90c7c52c {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03929.WXS.T.hg38 C3N-03929 LUAD WXS tumor CPT0219780006 ade1d469-d5fa-4a53-8646-e4f88e52bd4c_wxs_gdc_realn.bam 31041485731 BAM harmonized CPTAC3 40b08bad-820e-4dbf-b901-0a97454136aa 4f32eabb8b8f013009896e6c09b1d706 {"aliquot_tag": "ALQ_ab15ec4a", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.MethArray.Green.A C3N-03933 HNSCC Methylation_Array tissue_normal CPT0220620006 203273200110_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 85e2ecec-84b0-434d-9b52-f2f0c735f3cb dec502e1f2126f891f450d9f57373873 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.MethArray.Green.T C3N-03933 HNSCC Methylation_Array tumor CPT0220610006 203273200110_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8033a6b0-2f35-45a6-843e-1d2995b24f9e 66c72e941ebb72f100894ea010fe7899 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.MethArray.Red.A C3N-03933 HNSCC Methylation_Array tissue_normal CPT0220620006 203273200110_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 41e70474-117d-410c-88bd-bf151c464436 a7ae1336a03044c65fee162a629d70e1 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.MethArray.Red.T C3N-03933 HNSCC Methylation_Array tumor CPT0220610006 203273200110_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 83ee5a56-7636-4027-99b0-d3c39ed410bb d3416be6573b1e5ab85f7631d36cb229 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.miRNA-Seq.A.hg38 C3N-03933 HNSCC miRNA-Seq tissue_normal CPT0220620009 86ae8a85-2a56-458f-acb7-fc9fb107ddf1_mirnaseq_gdc_realn.bam 273667428 BAM harmonized CPTAC3 1226ff44-1c91-41d6-bdb3-80a6238d01fa acdd57e67db061793edd30cb5fda5ca9 {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.miRNA-Seq.S10_L005_R1.A C3N-03933 HNSCC miRNA-Seq tissue_normal CPT0220620009 190228_UNC32-K00270_0151_AHYLY3BBXX_TAGCTT_S10_L005_R1_001.unaln.bam 240143294 BAM S10_L005_R1 submitted_unaligned CPTAC3 1387b2f1-e755-4b65-9dee-1e8567cd02c8 606f7811eada8e52a6a44fcdaa49f84e {"aliquot_tag": "ALQ_a15178ef", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.miRNA-Seq.S25_L004_R1.T C3N-03933 HNSCC miRNA-Seq tumor CPT0220610009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L004_R1_001.unaln.bam 228960724 BAM S25_L004_R1 submitted_unaligned CPTAC3 f064496a-d227-4b59-89af-da7df7e12537 658af79f94c7ddc0fd08a884acca6ca1 {"aliquot_tag": "ALQ_e6f1023f", "sample": "S25", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.miRNA-Seq.T.hg38 C3N-03933 HNSCC miRNA-Seq tumor CPT0220610009 fd105c6e-39db-4a51-a70b-d65f5a985fa0_mirnaseq_gdc_realn.bam 256413294 BAM harmonized CPTAC3 e1111762-d20c-4ffe-b021-daad6f5cadcc 0b1a316b5565533e1c0913ff7593aed2 {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.chimeric.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.chimeric.gdc_realn.bam 27432231 BAM chimeric harmonized CPTAC3 c35c6df9-5e3b-43a2-9e92-b870be815b00 05c6dd143bf387f68a8c0fe88f5aa7ef {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.RNA-Seq.chimeric.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.chimeric.gdc_realn.bam 508022546 BAM chimeric harmonized CPTAC3 d9301909-9d6f-42f2-915e-a3d42bcf047d b9b48cd191762f60a27af294525fe32c {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.chimeric.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.chimeric.gdc_realn.bam 143341777 BAM chimeric harmonized CPTAC3 3cab17e2-0f9e-4086-bd7d-993fadd51672 87e6446b9b0a38d442aa58bcfca972eb {"aliquot_tag": "ALQ_4b11d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.genomic.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.genomic.gdc_realn.bam 8396260787 BAM genomic harmonized CPTAC3 ace8976d-ce14-4bf9-b982-628e88bf2856 e554fe747c3d3b987cf748494f3c94c8 {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.RNA-Seq.genomic.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.genomic.gdc_realn.bam 8429589321 BAM genomic harmonized CPTAC3 d088efbc-7368-4204-bbed-ec8f2c2ec523 1afb36d654a570e28332155bd85fbe5d {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.genomic.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.genomic.gdc_realn.bam 8474617684 BAM genomic harmonized CPTAC3 8b521896-7bef-43c0-98bd-cbf32ebfc874 8eb66bc6c2a89bdc256ef7ea1f416f93 {"aliquot_tag": "ALQ_4b11d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.S15_L004_R1.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4100140757 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 1551efe9-d971-49e8-b106-97529a3bc83f f838fbf6959f2ee0620a81f1a0d9ccaa {"aliquot_tag": "ALQ_e6f1023f", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.S15_L004_R2.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R2_001.fastq.gz 3937845323 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 dd399b5f-07c0-49b2-bd2a-40ecb455382c 2400e6538a850a460d4f96f1228c81c2 {"aliquot_tag": "ALQ_e6f1023f", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.S22_L005_R1.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R1_001.fastq.gz 3964533067 FASTQ S22_L005_R1 submitted_unaligned CPTAC3 d3d388e2-79e4-4f88-8337-43c48bc5afc3 9edb742df5706d39335de1a1e22f132f {"aliquot_tag": "ALQ_a15178ef", "sample": "S22", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.RNA-Seq.S22_L005_R2.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R2_001.fastq.gz 4314337980 FASTQ S22_L005_R2 submitted_unaligned CPTAC3 4ce107ec-5214-4e15-9f89-d8384bfe344b 7be65d71c3e2d807cb62f7f1b78fdff1 {"aliquot_tag": "ALQ_a15178ef", "sample": "S22", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.RNA-Seq.S2_R1.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R1_001.fastq.gz 5127154253 FASTQ S2_R1 submitted_unaligned CPTAC3 d52e8a47-7228-4773-8aad-1161900b961e 0eb33c34d64b66455894edbe4b9eb1b1 {"aliquot_tag": "ALQ_4b11d8c", "sample": "S2", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.S2_R2.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R2_001.fastq.gz 5209190246 FASTQ S2_R2 submitted_unaligned CPTAC3 470782ea-f98a-458f-a619-42beeee414af 3601941acae108a1c7a4d6212a753952 {"aliquot_tag": "ALQ_4b11d8c", "sample": "S2", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.transcriptome.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.transcriptome.gdc_realn.bam 12566829813 BAM transcriptome harmonized CPTAC3 7cfff12f-b806-49ff-8842-95bf2d42b60c 690798b74531690c09d3e22594b8903c {"aliquot_tag": "ALQ_a15178ef", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.RNA-Seq.transcriptome.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.transcriptome.gdc_realn.bam 10418933188 BAM transcriptome harmonized CPTAC3 666a82b1-de99-4370-ae48-6616f98fe6c4 27566525828e0300381b4021999eba52 {"aliquot_tag": "ALQ_e6f1023f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.RNA-Seq.transcriptome.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.transcriptome.gdc_realn.bam 7025915841 BAM transcriptome harmonized CPTAC3 6914ccfb-ce19-4991-b5e6-4e4462d9e4f9 e76745c85eb374806e4a2767fad6b0b4 {"aliquot_tag": "ALQ_4b11d8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.WGS.N C3N-03933 HNSCC WGS blood_normal CPT0220710002 CPT0220710002.WholeGenome.RP-1303.bam 71725820849 BAM submitted_aligned CPTAC3 870433f0-51df-42d2-bce9-ec6ad1c49bc3 0902bfa86275190ee1b5c63e2a5dc5a3 {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03933.WGS.N.hg38 C3N-03933 HNSCC WGS blood_normal CPT0220710002 66668ae5-3dca-4c21-b69d-946610b983cb_wgs_gdc_realn.bam 103653416516 BAM harmonized CPTAC3 fea437c3-bce1-48d3-b215-c8dcc4cfd6c0 5b56e32c22328fef9166d846ba980bd7 {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03933.WGS.T C3N-03933 HNSCC WGS tumor CPT0220610006 CPT0220610006.WholeGenome.RP-1303.bam 69133706222 BAM submitted_aligned CPTAC3 656bb6dc-555f-4202-80f1-e9f2d69d7d24 5331576993644f3378e9b112d4c497b6 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.WGS.T.hg38 C3N-03933 HNSCC WGS tumor CPT0220610006 3d5ad036-e95e-43e3-bd05-51f91ae4361e_wgs_gdc_realn.bam 102348831958 BAM harmonized CPTAC3 f7e6bd9b-a2aa-4d5b-871b-7b9f475d3abc 54e4cfc3d1fab7b72bd9823b3b079756 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.WXS.A C3N-03933 HNSCC WXS tissue_normal CPT0220620006 CPT0220620006.WholeExome.RP-1303.bam 24654909027 BAM submitted_aligned CPTAC3 f60ba622-e009-4768-a025-ac23c1bba09d 1f7e2de441bac3159e199e4554e18b32 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.WXS.A.hg38 C3N-03933 HNSCC WXS tissue_normal CPT0220620006 66c67198-6890-4dcd-8380-7ff1116dbfd2_wxs_gdc_realn.bam 34715113701 BAM harmonized CPTAC3 c594a56b-5433-4650-8471-eba4cbbd2513 e172797ed310fd1db5093afdeb4d0de4 {"aliquot_tag": "ALQ_31ee657e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-03933.WXS.N C3N-03933 HNSCC WXS blood_normal CPT0220710002 CPT0220710002.WholeExome.RP-1303.bam 39141618732 BAM submitted_aligned CPTAC3 26fca7e1-0a16-428a-91da-f4ed217256aa 4fd78fe3192450e8ff0e4c850f0b4e7d {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03933.WXS.N.hg38 C3N-03933 HNSCC WXS blood_normal CPT0220710002 66668ae5-3dca-4c21-b69d-946610b983cb_wxs_gdc_realn.bam 53832696277 BAM harmonized CPTAC3 3e3307a5-dc02-49fa-93bc-840e169947ca 5770662f53d91f3123869b9c741bd58a {"aliquot_tag": "ALQ_ba7f0812", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-03933.WXS.T C3N-03933 HNSCC WXS tumor CPT0220610006 CPT0220610006.WholeExome.RP-1303.bam 26994266511 BAM submitted_aligned CPTAC3 09d93280-28cb-4d62-97aa-195a59c5c05d cbe4d850648c70b14855d184c9b4269f {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03933.WXS.T.hg38 C3N-03933 HNSCC WXS tumor CPT0220610006 3d5ad036-e95e-43e3-bd05-51f91ae4361e_wxs_gdc_realn.bam 37594542653 BAM harmonized CPTAC3 d0257de6-6fed-465b-ab36-56e10915c576 2a3fbc37b53e0815b03d42f4861aedf8 {"aliquot_tag": "ALQ_764e1fae", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03935.MethArray.Green.T C3N-03935 GBM Methylation_Array tumor CPT0285340006 204367490029_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 207abe29-f504-4315-88df-c6b6a14c9427 57ac380e8e817fcbb102505d5b0677c6 {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.MethArray.Red.T C3N-03935 GBM Methylation_Array tumor CPT0285340006 204367490029_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 64108981-a48e-464f-9e82-4ee2c2ca448d 63527f45cc13a92708b3e7cce3c0e89d {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.miRNA-Seq.S13_L001_R1.T C3N-03935 GBM miRNA-Seq tumor CPT0285340009 200403_UNC31-K00269_0274_AHCF7GBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 286598162 BAM S13_L001_R1 submitted_unaligned CPTAC3 c0113773-3e21-4991-82ca-7f9be7a7fbde 37b763363fc4ac2b5bf9f3023414a0e2 {"aliquot_tag": "ALQ_bd242f93", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.miRNA-Seq.T.hg38 C3N-03935 GBM miRNA-Seq tumor CPT0285340009 d866761c-b106-45a7-a5ca-af2b3bf16c14_mirnaseq_gdc_realn.bam 329521659 BAM harmonized CPTAC3 d5b0b9d3-3fc2-46c7-8d17-ed8cd9b6a9b1 c4f33e1711a5e8e744efc7c43ab19ef7 {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.RNA-Seq.chimeric.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.chimeric.gdc_realn.bam 21960147 BAM chimeric harmonized CPTAC3 3ecf537d-f410-4880-b0ea-2e4d3c5ff666 c82116427a4fec6b2eb4b0f7f06b3a6d {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.RNA-Seq.genomic.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.genomic.gdc_realn.bam 6999609466 BAM genomic harmonized CPTAC3 93b9b907-2322-4836-bab9-49ae62bac304 e90ca19648bac5b67881008a133e4945 {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.RNA-Seq.S29_L008_R1.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3111435295 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 4c91740e-2276-47a4-9b32-c7720ab51594 6207b00bd1f4df987ac214c6de4366c0 {"aliquot_tag": "ALQ_bd242f93", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.RNA-Seq.S29_L008_R2.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 87079c71-53a8-4bf0-925d-e914da7bfd96 e253a53c0ef2eedb1d4ffe272a685192 {"aliquot_tag": "ALQ_bd242f93", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.RNA-Seq.transcriptome.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.transcriptome.gdc_realn.bam 6875036624 BAM transcriptome harmonized CPTAC3 57c4f4ff-ad6a-4a1e-8d54-90fa2d10c866 83a8931d75698ed83ab48df8c1ab741a {"aliquot_tag": "ALQ_bd242f93", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.WGS.N C3N-03935 GBM WGS blood_normal CPT0285370002 CPT0285370002.WholeGenome.RP-2158.bam 22774513143 BAM submitted_aligned CPTAC3 d680c188-bf02-4929-8ce0-aaceb1c9d6d6 9583443718a3e2cd7c682f9827ce7e3d {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03935.WGS.N.hg38 C3N-03935 GBM WGS blood_normal CPT0285370002 6d9e79c5-a520-4b3b-bae8-a483281851f4_wgs_gdc_realn.bam 65995432537 BAM harmonized CPTAC3 8d17e3f0-ff4c-4b01-a090-2dc7d653f96e 113dde5c3d411817995ede6350b87eb3 {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03935.WGS.T C3N-03935 GBM WGS tumor CPT0285340006 CPT0285340006.WholeGenome.RP-2158.bam 24454872786 BAM submitted_aligned CPTAC3 a7426cb5-a1d7-4401-a1bc-ddd7d9ec45ee faf0457669fb6285f208f1dd86aa0e8b {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.WGS.T.hg38 C3N-03935 GBM WGS tumor CPT0285340006 9e503f81-06bd-4083-8f68-04dab904125f_wgs_gdc_realn.bam 73242802527 BAM harmonized CPTAC3 abd5362c-b11a-4cfb-9751-6b1041f319cb 348d55fa29df9740b756b185a7ca430e {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.WXS.N C3N-03935 GBM WXS blood_normal CPT0285370002 CPT0285370002.WholeExome.RP-1303.bam 31920567263 BAM submitted_aligned CPTAC3 ecfbada8-1f23-48e7-8650-817e8b8f1b1d 1ed2f0ac6e015639be1c5007b81a0526 {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03935.WXS.N.hg38 C3N-03935 GBM WXS blood_normal CPT0285370002 6d9e79c5-a520-4b3b-bae8-a483281851f4_wxs_gdc_realn.bam 44665231448 BAM harmonized CPTAC3 aff2f741-3432-47fc-a21a-121927b7e96c 78491279646ffc199a3c56bcf1030172 {"aliquot_tag": "ALQ_6d568ccb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03935.WXS.T C3N-03935 GBM WXS tumor CPT0285340006 CPT0285340006.WholeExome.RP-1303.bam 30700999800 BAM submitted_aligned CPTAC3 4f9548fc-e1c4-43e6-aab1-06bf34f7339e 70f55736feafa86ff4385a86a378f58f {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03935.WXS.T.hg38 C3N-03935 GBM WXS tumor CPT0285340006 9e503f81-06bd-4083-8f68-04dab904125f_wxs_gdc_realn.bam 43446340788 BAM harmonized CPTAC3 f4e94091-101c-40bb-bce6-404972b3fa7e f80f5dd2792f4625b71aed3679aa00f0 {"aliquot_tag": "ALQ_2d9b3202", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.MethArray.Green.T C3N-03939 GBM Methylation_Array tumor CPT0285390006 204372030076_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 59bc3dac-ed49-4e5a-8d82-0d68c8d88f4c d646c0a6ba49991d462ee8e61d40ba2e {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.MethArray.Red.T C3N-03939 GBM Methylation_Array tumor CPT0285390006 204372030076_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 a9362c30-c06e-4bae-acb9-a6ee2cf24f8e 156bc292815fe7a48d4a2b53beadad1c {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.miRNA-Seq.S14_L001_R1.T C3N-03939 GBM miRNA-Seq tumor CPT0285390009 200403_UNC31-K00269_0274_AHCF7GBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 245524484 BAM S14_L001_R1 submitted_unaligned CPTAC3 f61d0b3c-0939-49f5-9038-3a4e0363e06f bf2686dba8542b7a8ee8aed745253095 {"aliquot_tag": "ALQ_45b4eb22", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.miRNA-Seq.T.hg38 C3N-03939 GBM miRNA-Seq tumor CPT0285390009 c7dd3a3c-1814-4218-9edb-45c98aa846a8_mirnaseq_gdc_realn.bam 270906743 BAM harmonized CPTAC3 484956df-24ec-46be-96c9-79a50bc2041d 2d66bebf22009c8cd58daecaac2b86f7 {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.RNA-Seq.chimeric.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.chimeric.gdc_realn.bam 19392687 BAM chimeric harmonized CPTAC3 33d4ecf9-f53f-4c6a-a671-3fdb1243ae46 42a033450ee7c03f9abb9610ec06ea09 {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.RNA-Seq.genomic.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.genomic.gdc_realn.bam 6357210576 BAM genomic harmonized CPTAC3 4217f956-1d52-4f25-a2ca-5e14858f9c7c 77e4891808c737cb7eb11445e42ad65f {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.RNA-Seq.S30_L008_R1.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ S30_L008_R1 submitted_unaligned CPTAC3 3f4dd232-5cba-4b97-bd63-f47967a5436a c9acc87c1e32d5a307249b6fe38e447f {"aliquot_tag": "ALQ_45b4eb22", "sample": "S30", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.RNA-Seq.S30_L008_R2.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ S30_L008_R2 submitted_unaligned CPTAC3 452a0caf-f993-41ba-9f18-1a1180aeb710 8c18199b770ebbb65a9b55a6aace1b68 {"aliquot_tag": "ALQ_45b4eb22", "sample": "S30", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.RNA-Seq.transcriptome.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.transcriptome.gdc_realn.bam 8358938403 BAM transcriptome harmonized CPTAC3 b67aa98e-7156-4f73-a8be-905f562cb6a2 a5ee8f21077cdc0f3b585fab7f7f64a2 {"aliquot_tag": "ALQ_45b4eb22", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.WGS.N C3N-03939 GBM WGS blood_normal CPT0285410002 CPT0285410002.WholeGenome.RP-2158.bam 27430682246 BAM submitted_aligned CPTAC3 719de53d-9cb1-4d43-8b73-bc277df19224 7f4513d241c5df965c9be0434562c316 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03939.WGS.N.hg38 C3N-03939 GBM WGS blood_normal CPT0285410002 6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wgs_gdc_realn.bam 81852016126 BAM harmonized CPTAC3 c84d71d0-5ca9-4237-bab1-93228f81c37e 7acb24f258bd2d11eddb67290f1dcfc3 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03939.WGS.T C3N-03939 GBM WGS tumor CPT0285390006 CPT0285390006.WholeGenome.RP-2158.bam 25775708475 BAM submitted_aligned CPTAC3 ba5428f4-d7c6-479a-9214-d7e1a4947ecf ea8ec285146eb2733f18adfa12fa2403 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.WGS.T.hg38 C3N-03939 GBM WGS tumor CPT0285390006 fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wgs_gdc_realn.bam 77742013082 BAM harmonized CPTAC3 4ffecf2d-31f6-48ff-9829-3ad720b0f748 a9c730fc1e04ea04b0dc6cf77e512aa7 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.WXS.N C3N-03939 GBM WXS blood_normal CPT0285410002 CPT0285410002.WholeExome.RP-1303.bam 25218551391 BAM submitted_aligned CPTAC3 221aa9d7-8d0d-422b-b89e-868316bf923e a84e0b42d99823635b64d848f074cb27 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03939.WXS.N.hg38 C3N-03939 GBM WXS blood_normal CPT0285410002 6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wxs_gdc_realn.bam 34765297539 BAM harmonized CPTAC3 96c5d2ef-106f-4362-a6c4-49724e0abe80 6353a3cb14c080c3799293994a43d4e6 {"aliquot_tag": "ALQ_ff1349d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03939.WXS.T C3N-03939 GBM WXS tumor CPT0285390006 CPT0285390006.WholeExome.RP-1303.bam 16808844495 BAM submitted_aligned CPTAC3 b8dc848c-62f4-4de0-a629-1ba4efd06757 419f888cf958995fa91966ac5ce86ae1 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03939.WXS.T.hg38 C3N-03939 GBM WXS tumor CPT0285390006 fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wxs_gdc_realn.bam 23051245145 BAM harmonized CPTAC3 7292b808-4c7a-4240-a3d3-096db96095b1 68a2de12523bcff6be316e4092080329 {"aliquot_tag": "ALQ_d50bf6b3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.MethArray.Green.T C3N-04092 GBM Methylation_Array tumor CPT0285440006 204372030072_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d9d5b8be-d2cb-4696-a372-9facb515b58f b8441ad7b43e8b636aa6c44ee71434ab {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.MethArray.Red.T C3N-04092 GBM Methylation_Array tumor CPT0285440006 204372030072_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 cab1d1c1-60c4-40f0-8558-8773ca36b8f1 d77e44bcc32b7a698642b2e32a0d53a1 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.miRNA-Seq.S15_L001_R1.T C3N-04092 GBM miRNA-Seq tumor CPT0285440009 200403_UNC31-K00269_0274_AHCF7GBBXY_CTATAC_S15_L001_R1_001.unaln.bam 247318813 BAM S15_L001_R1 submitted_unaligned CPTAC3 91b1bd12-b236-4f6c-911d-7db6a9a672af 5e8d424c1233a731e08bad1e213cf549 {"aliquot_tag": "ALQ_a0211f2b", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.miRNA-Seq.T.hg38 C3N-04092 GBM miRNA-Seq tumor CPT0285440009 b8e7d110-81d4-488f-a6ac-88818105d58c_mirnaseq_gdc_realn.bam 274868455 BAM harmonized CPTAC3 5fc1f505-741a-4c21-977e-a69c068dddf4 fdee458d6d3a8b3c005b47914f926afd {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.RNA-Seq.chimeric.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.chimeric.gdc_realn.bam 26117157 BAM chimeric harmonized CPTAC3 ac623e92-a549-42e6-af8a-e217bd6eb31c d2aea394c3695c8819b65b35edfaa339 {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.RNA-Seq.genomic.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.genomic.gdc_realn.bam 6339005273 BAM genomic harmonized CPTAC3 62103b7c-375e-4d4b-9527-397101cacfd4 d9155e9bae961e9e32f6c87fcacf807d {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.RNA-Seq.S31_L008_R1.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 096b63e1e02fadb2964865f85145f210 {"aliquot_tag": "ALQ_a0211f2b", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.RNA-Seq.S31_L008_R2.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 07a3bbdc-69c2-485b-98b2-82ada22cae69 381c644f9e1d582e1d7238a5cfd0065c {"aliquot_tag": "ALQ_a0211f2b", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.RNA-Seq.transcriptome.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.transcriptome.gdc_realn.bam 6845484963 BAM transcriptome harmonized CPTAC3 5479e396-2db3-455b-b611-d797db731225 5eb38a350d72f6cb7c358823bdf55bc3 {"aliquot_tag": "ALQ_a0211f2b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.WGS.N C3N-04092 GBM WGS blood_normal CPT0285450002 CPT0285450002.WholeGenome.RP-2158.bam 24498698839 BAM submitted_aligned CPTAC3 566f7b48-65df-4fb3-87bc-8586884af4f1 4163c5eed29b6e10dcb8b8a00961bafd {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04092.WGS.N.hg38 C3N-04092 GBM WGS blood_normal CPT0285450002 79ce8e10-2d6f-4d92-a58c-a34c06af7677_wgs_gdc_realn.bam 74020875117 BAM harmonized CPTAC3 4c77804a-0e1e-449d-affb-55a849b06bc3 3f195251abf1d37de6e5480af6240e0f {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04092.WGS.T C3N-04092 GBM WGS tumor CPT0285440006 CPT0285440006.WholeGenome.RP-2158.bam 24504031508 BAM submitted_aligned CPTAC3 2bf06983-aea2-41c2-adf3-ff62afc65962 065d7f442c1dd8244cbc7acf702d09e3 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.WGS.T.hg38 C3N-04092 GBM WGS tumor CPT0285440006 01e34584-fe56-487f-900d-0c82daf338a0_wgs_gdc_realn.bam 74544654961 BAM harmonized CPTAC3 2545b6fa-59be-403f-9d33-29b33c9fea27 a10fecf2efbfe70758caae437d4bc5eb {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.WXS.N C3N-04092 GBM WXS blood_normal CPT0285450002 CPT0285450002.WholeExome.RP-1303.bam 27331686699 BAM submitted_aligned CPTAC3 02dea684-c120-47a8-9e66-f3ff166d1819 b92a324f4ff18cec014d891ad48c6809 {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04092.WXS.N.hg38 C3N-04092 GBM WXS blood_normal CPT0285450002 79ce8e10-2d6f-4d92-a58c-a34c06af7677_wxs_gdc_realn.bam 37382509699 BAM harmonized CPTAC3 bf40953c-253a-4b01-afd9-04ad79976e45 94e40c2aaf65b48efba917bcee15b0d7 {"aliquot_tag": "ALQ_a93ef13", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04092.WXS.T C3N-04092 GBM WXS tumor CPT0285440006 CPT0285440006.WholeExome.RP-1303.bam 26184111709 BAM submitted_aligned CPTAC3 50e9eb47-f03c-4992-88dd-551c23a4e436 caaa9849f32a2c5d89f45111abe64355 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04092.WXS.T.hg38 C3N-04092 GBM WXS tumor CPT0285440006 01e34584-fe56-487f-900d-0c82daf338a0_wxs_gdc_realn.bam 37480467959 BAM harmonized CPTAC3 8a591e41-81b8-497b-a030-e20bbbf8e555 0d178a7a5fb89a5fed9ee00b9b295274 {"aliquot_tag": "ALQ_309e02ba", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.MethArray.Green.T C3N-04094 GBM Methylation_Array tumor CPT0285460007 204367470131_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5c3e1ba0-cae1-4ae9-9273-342a86eb4c40 b0db584a4d71d5e8d153a9e2c96bf161 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.MethArray.Red.T C3N-04094 GBM Methylation_Array tumor CPT0285460007 204367470131_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 87a4544c-b6d3-4560-aaf8-81719f14b3eb 5c9d3a1f850764061ce770c389085aef {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.miRNA-Seq.S16_L001_R1.T C3N-04094 GBM miRNA-Seq tumor CPT0285460010 200403_UNC31-K00269_0274_AHCF7GBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 149874462 BAM S16_L001_R1 submitted_unaligned CPTAC3 a8e314a0-82cb-467d-8341-0d0069bb2b0e 67045085535b61b9aea205dd5f731436 {"aliquot_tag": "ALQ_ba26c5ae", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.miRNA-Seq.T.hg38 C3N-04094 GBM miRNA-Seq tumor CPT0285460010 16e7f672-0451-45e7-b0a8-a5a62491ea99_mirnaseq_gdc_realn.bam 165882365 BAM harmonized CPTAC3 ab2a0a68-a90a-454d-86ad-b9bc2aaf99dc dcd88526e635e2263dd3d42d34e6dbed {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.RNA-Seq.chimeric.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.chimeric.gdc_realn.bam 51375356 BAM chimeric harmonized CPTAC3 419c5b79-8c1b-4122-9d86-118b4c9d2b1d 79d5214644e13930124126b05e0628fa {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.RNA-Seq.genomic.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.genomic.gdc_realn.bam 11462263435 BAM genomic harmonized CPTAC3 de26d2cc-6297-4625-8bb8-11911c9f1e8f a8149f059c9fdf05f7d98b22e11b541f {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.RNA-Seq.S60_L006_R1.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ S60_L006_R1 submitted_unaligned CPTAC3 fa31d2b3-82b2-4734-8c22-ac89b732e8a2 cdfe6c623bfababea2e868a4ae59f0d7 {"aliquot_tag": "ALQ_ba26c5ae", "sample": "S60", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.RNA-Seq.S60_L006_R2.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ S60_L006_R2 submitted_unaligned CPTAC3 254472af-7bd3-4dfb-9014-c2dc90560859 de8e1f778e080b5809fefcbc804cdcc0 {"aliquot_tag": "ALQ_ba26c5ae", "sample": "S60", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.RNA-Seq.transcriptome.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.transcriptome.gdc_realn.bam 13753296993 BAM transcriptome harmonized CPTAC3 a4edf812-4a4c-4f05-ac9a-22f4040ff901 5c76a547efa773dc39094922b930e1e0 {"aliquot_tag": "ALQ_ba26c5ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.WGS.N C3N-04094 GBM WGS blood_normal CPT0285490002 CPT0285490002.WholeGenome.RP-2158.bam 32209259574 BAM submitted_aligned CPTAC3 96edcb35-53eb-4666-b388-713a74542f88 3dda872bd2942f35fabb36e1c84148b7 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04094.WGS.N.hg38 C3N-04094 GBM WGS blood_normal CPT0285490002 1890659f-5698-4b8f-a0bf-1da6b3791731_wgs_gdc_realn.bam 94794094970 BAM harmonized CPTAC3 9f93ec20-1c38-41a0-8f96-28457caad083 4509d1b328ecd668f7f22457f604e4f9 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04094.WGS.T C3N-04094 GBM WGS tumor CPT0285460007 CPT0285460007.WholeGenome.RP-2158.bam 22517447803 BAM submitted_aligned CPTAC3 8574b1b2-a42e-4fae-9300-61ae76f62d00 0b15efca7c6bac108588e65712c37f99 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.WGS.T.hg38 C3N-04094 GBM WGS tumor CPT0285460007 917e08bc-e1f6-4a6f-a593-4b99445df33e_wgs_gdc_realn.bam 66930723100 BAM harmonized CPTAC3 57d06724-da21-4c7d-8738-ffd08f512893 20634cd7bc8f42385b6e93a2727366f4 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.WXS.N C3N-04094 GBM WXS blood_normal CPT0285490002 CPT0285490002.WholeExome.RP-1303.bam 21093147419 BAM submitted_aligned CPTAC3 4e99f6a2-d917-4406-9326-2a9fc2b509ab 1dca8575fdbd1a9d3e3ea7d8e3f64174 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04094.WXS.N.hg38 C3N-04094 GBM WXS blood_normal CPT0285490002 1890659f-5698-4b8f-a0bf-1da6b3791731_wxs_gdc_realn.bam 28904441295 BAM harmonized CPTAC3 30918018-bf91-418f-9d9f-b7d873524ee0 0e19475ea4e29846230c0d1375b321e5 {"aliquot_tag": "ALQ_cf630212", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04094.WXS.T C3N-04094 GBM WXS tumor CPT0285460007 CPT0285460007.WholeExome.RP-1303.bam 22403351746 BAM submitted_aligned CPTAC3 1fe503ff-2f3a-45eb-b1ce-2d64bfdd3ba0 4e5f0cb2d43597dcb6c35a1ae88be98c {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04094.WXS.T.hg38 C3N-04094 GBM WXS tumor CPT0285460007 917e08bc-e1f6-4a6f-a593-4b99445df33e_wxs_gdc_realn.bam 32627517794 BAM harmonized CPTAC3 0fb8f474-4c02-4a4e-8281-6472347703c7 904001a4ae0521b352cc0e055e675944 {"aliquot_tag": "ALQ_3d59614c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.MethArray.Green.T C3N-04097 GBM Methylation_Array tumor CPT0285500006 204372030164_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e7c32d3b-ffc3-47e3-917c-9042af3b56b5 8f1af1c1922c0076ce08a8e768826879 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.MethArray.Red.T C3N-04097 GBM Methylation_Array tumor CPT0285500006 204372030164_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 343a7d43-de13-4bb2-9b70-c6fba43a1c06 a6f9d2a70038e18c02d622f0d11b3feb {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.miRNA-Seq.S17_L001_R1.T C3N-04097 GBM miRNA-Seq tumor CPT0285500009 200403_UNC31-K00269_0274_AHCF7GBBXY_GACGAC_S17_L001_R1_001.unaln.bam 259764215 BAM S17_L001_R1 submitted_unaligned CPTAC3 a9428f90-fc78-4575-b8cb-96de3e36296f bbcf7fc25087244596d20e732ad5f913 {"aliquot_tag": "ALQ_9efd6a4e", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.miRNA-Seq.T.hg38 C3N-04097 GBM miRNA-Seq tumor CPT0285500009 7370bed1-5db7-4796-9763-d586cd61377e_mirnaseq_gdc_realn.bam 291557531 BAM harmonized CPTAC3 7055fdfe-5233-425f-9ed6-24158dcc0afd d931adbc27b0322a0f5d6d12d7e9d19a {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.RNA-Seq.chimeric.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.chimeric.gdc_realn.bam 27565623 BAM chimeric harmonized CPTAC3 6e5914c8-c63a-42c4-911a-33419acf253d 4247b4f14edc4a42493fdb60c97c4b40 {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.RNA-Seq.genomic.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.genomic.gdc_realn.bam 6664163855 BAM genomic harmonized CPTAC3 d750825b-4fde-4bca-a2ff-c87bb4ca22c1 58c0f857500d6fec9f2d0451f1fbefb3 {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.RNA-Seq.S1_L004_R1.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ S1_L004_R1 submitted_unaligned CPTAC3 9e14644a-eeec-4d36-a439-d7defafab519 0984770fa06a36ea6ea3e9a65080a01a {"aliquot_tag": "ALQ_9efd6a4e", "sample": "S1", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.RNA-Seq.S1_L004_R2.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ S1_L004_R2 submitted_unaligned CPTAC3 f1b1a394-d643-496b-b856-60147ea00c1a 82bb59dd2209eb45feae2645291434b5 {"aliquot_tag": "ALQ_9efd6a4e", "sample": "S1", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.RNA-Seq.transcriptome.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.transcriptome.gdc_realn.bam 8025555743 BAM transcriptome harmonized CPTAC3 65aa658f-ef1f-4d59-9326-30702028052d 1a5b012bac73e8c20b2375aa2de10050 {"aliquot_tag": "ALQ_9efd6a4e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.WGS.N C3N-04097 GBM WGS blood_normal CPT0285530002 CPT0285530002.WholeGenome.RP-2158.bam 29954202898 BAM submitted_aligned CPTAC3 fc560399-532f-4dd8-b751-b8918dce92a0 677983628c2001d417bd3e165463bfbe {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04097.WGS.N.hg38 C3N-04097 GBM WGS blood_normal CPT0285530002 926063e7-fbde-4313-8074-4ca104eef182_wgs_gdc_realn.bam 89113536785 BAM harmonized CPTAC3 4784a3d9-c761-4a61-9dac-3d84eb853c59 5b048f201405f108765411ce5db2bbc2 {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04097.WGS.T C3N-04097 GBM WGS tumor CPT0285500006 CPT0285500006.WholeGenome.RP-2158.bam 28363607419 BAM submitted_aligned CPTAC3 f9c5426f-dacd-426f-9a0f-897ccad93344 e2ab05ff6917d412f766e6f5e948d6fa {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.WGS.T.hg38 C3N-04097 GBM WGS tumor CPT0285500006 dc8d772e-ffad-4cc1-9a32-80000b767f7b_wgs_gdc_realn.bam 86071581874 BAM harmonized CPTAC3 b206bbed-72f4-4453-b41b-7af6e8c5555a bc5b0d002a8b17af36ebf8ea7ce57d00 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.WXS.N C3N-04097 GBM WXS blood_normal CPT0285530002 CPT0285530002.WholeExome.RP-1303.bam 33139294412 BAM submitted_aligned CPTAC3 e0264820-b1e9-4169-9ce4-4ec86ef3df3f 32d33936877cfb574b9ea9d381014780 {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04097.WXS.N.hg38 C3N-04097 GBM WXS blood_normal CPT0285530002 926063e7-fbde-4313-8074-4ca104eef182_wxs_gdc_realn.bam 45034306382 BAM harmonized CPTAC3 f9e2e52a-6327-4053-8262-66ca49ec97ee 5ef62daff597248bcc65335987766337 {"aliquot_tag": "ALQ_4e8fc916", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04097.WXS.T C3N-04097 GBM WXS tumor CPT0285500006 CPT0285500006.WholeExome.RP-1303.bam 16249740413 BAM submitted_aligned CPTAC3 af47378d-93eb-4d71-9fd9-19a5fbda4cda c6da59d57b0c62201bd616321dc26014 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04097.WXS.T.hg38 C3N-04097 GBM WXS tumor CPT0285500006 dc8d772e-ffad-4cc1-9a32-80000b767f7b_wxs_gdc_realn.bam 23088909668 BAM harmonized CPTAC3 c394da8c-1cc9-4554-9d4a-5ac062b4aa42 361b6b8d8d15107a68cb7656e9564522 {"aliquot_tag": "ALQ_e4277df", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.MethArray.Green.T C3N-04098 GBM Methylation_Array tumor CPT0285540007 204372030085_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 47ea6a5c-160f-48ee-9d61-4561b529abcd 89bfa7133997b45f8ecdd77dbedec7d7 {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.MethArray.Red.T C3N-04098 GBM Methylation_Array tumor CPT0285540007 204372030085_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 3c91d6ac-4127-44bc-9f33-d58a07e3887d 4b613e2bf977fc871d488f79c5c40871 {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.miRNA-Seq.S18_L001_R1.T C3N-04098 GBM miRNA-Seq tumor CPT0285540010 200403_UNC31-K00269_0274_AHCF7GBBXY_TAATCG_S18_L001_R1_001.unaln.bam 257392272 BAM S18_L001_R1 submitted_unaligned CPTAC3 a42fe332-87d4-4a16-a2ad-de9c84e8cee1 bad4e0983479bac0f19571e392f20a6f {"aliquot_tag": "ALQ_bba456b", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.miRNA-Seq.T.hg38 C3N-04098 GBM miRNA-Seq tumor CPT0285540010 f8ef438d-5435-410c-981e-3c637c1a913b_mirnaseq_gdc_realn.bam 288457553 BAM harmonized CPTAC3 76804205-4e1a-44fc-b05b-c7db2d525060 405f3bc4f2797c9dfc1eabef7cee027e {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.RNA-Seq.chimeric.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.chimeric.gdc_realn.bam 23255846 BAM chimeric harmonized CPTAC3 9e1617d6-f327-4336-b709-639504f8fcd3 b0b0fbcb5fd625c556cacc16aea91d50 {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.RNA-Seq.genomic.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.genomic.gdc_realn.bam 5855104607 BAM genomic harmonized CPTAC3 816ed8e8-b4a6-4f2b-8433-b5a020ab7b48 de7fdf70fe1264245cd681aacaf0549c {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.RNA-Seq.S2_L004_R1.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ S2_L004_R1 submitted_unaligned CPTAC3 e4772d8e-0ded-4236-8602-1b1dfe51e8df a2c47ebaa52301b2b649605b70283058 {"aliquot_tag": "ALQ_bba456b", "sample": "S2", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.RNA-Seq.S2_L004_R2.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ S2_L004_R2 submitted_unaligned CPTAC3 129e4b38-443f-4cf9-8e20-f98ccef517c8 ca8808351719f9cebd4bfb9948814dfc {"aliquot_tag": "ALQ_bba456b", "sample": "S2", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.RNA-Seq.transcriptome.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.transcriptome.gdc_realn.bam 6937643241 BAM transcriptome harmonized CPTAC3 5fa1a184-e36e-4d47-8387-2f6104b37f99 e4efb4c667354848dbab301d83b8e131 {"aliquot_tag": "ALQ_bba456b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.WGS.N C3N-04098 GBM WGS blood_normal CPT0285570002 CPT0285570002.WholeGenome.RP-2158.bam 27310844142 BAM submitted_aligned CPTAC3 7750f7a5-f900-492e-bfe8-8eb204bb32c3 b38d23906173f49262d77fe7ea08d538 {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04098.WGS.N.hg38 C3N-04098 GBM WGS blood_normal CPT0285570002 6416d98a-0117-48ec-a6ea-0875e22f55aa_wgs_gdc_realn.bam 81502245485 BAM harmonized CPTAC3 4cf31016-4283-4728-a22e-b353f72b2ae7 a969ee7707fea38c2e8d3421a0ee312c {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04098.WGS.T C3N-04098 GBM WGS tumor CPT0285540007 CPT0285540007.WholeGenome.RP-2158.bam 24939569712 BAM submitted_aligned CPTAC3 d866896c-45d0-4928-8193-ad1e2aca0b4a 7ba1ba31d7a085a5d73b71b63ca6518b {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.WGS.T.hg38 C3N-04098 GBM WGS tumor CPT0285540007 884a7198-709f-4946-9e7a-dea9055906df_wgs_gdc_realn.bam 75917029860 BAM harmonized CPTAC3 687ccc83-df37-4a60-acb8-5a6a684de758 6086a07bb809d62ce9a6b614d2b517ef {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.WXS.N C3N-04098 GBM WXS blood_normal CPT0285570002 CPT0285570002.WholeExome.RP-1303.bam 20394067243 BAM submitted_aligned CPTAC3 c242871c-7c14-4485-9ebc-e61f77f019bf 4eb014fce5a992c3998d7f7e2be578c0 {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04098.WXS.N.hg38 C3N-04098 GBM WXS blood_normal CPT0285570002 6416d98a-0117-48ec-a6ea-0875e22f55aa_wxs_gdc_realn.bam 27415183845 BAM harmonized CPTAC3 33f39ddb-4185-4905-81a6-52c9429067cc ab3a4ec64f905cd1868f4c2dc86dde9f {"aliquot_tag": "ALQ_bb0f6fd6", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04098.WXS.T C3N-04098 GBM WXS tumor CPT0285540007 CPT0285540007.WholeExome.RP-1303.bam 22554228508 BAM submitted_aligned CPTAC3 dafa82a6-dba7-449d-93a1-19b928e9e5ff 654482e78db397fc32ed34deedce4a2e {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04098.WXS.T.hg38 C3N-04098 GBM WXS tumor CPT0285540007 884a7198-709f-4946-9e7a-dea9055906df_wxs_gdc_realn.bam 31334787046 BAM harmonized CPTAC3 2002b1f2-6753-4744-aca7-282e72f76dfb dfb1fbbee0c09c838dc524abf99da937 {"aliquot_tag": "ALQ_8cc5e189", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.MethArray.Green.T C3N-04100 GBM Methylation_Array tumor CPT0285590006 204372030087_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2ba9e0e4-75bb-4337-9f00-84bca1ebafa2 da4054674d9d392292e720368f77d39d {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.MethArray.Red.T C3N-04100 GBM Methylation_Array tumor CPT0285590006 204372030087_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 0081743c-0dc3-40b7-9c2d-3ed5bb447a98 315bad76f550028acbbdcb2d68143c4d {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.miRNA-Seq.S46_L008_R1.T C3N-04100 GBM miRNA-Seq tumor CPT0285590013 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCCCGA_S46_L008_R1_001.unaln.bam 177661367 BAM S46_L008_R1 submitted_unaligned CPTAC3 601c2e37-5f34-490e-9d23-b35b0666b729 5efaffbc62c746d941ef22dbbb28571e {"aliquot_tag": "ALQ_6a23d060", "sample": "S46", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.miRNA-Seq.T.hg38 C3N-04100 GBM miRNA-Seq tumor CPT0285590013 9cbac332-c8ef-4f04-af5b-d1ef073c17e4_mirnaseq_gdc_realn.bam 196890022 BAM harmonized CPTAC3 4332b035-f3ff-425c-97d5-04c51097867c 23384249754801601ea4a09c62c6f440 {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.RNA-Seq.chimeric.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.chimeric.gdc_realn.bam 27851232 BAM chimeric harmonized CPTAC3 3882af7b-59f3-49c5-aca5-771266b38ba0 b64ee998348b8e63492f255b45847bfa {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.RNA-Seq.genomic.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.genomic.gdc_realn.bam 7196840849 BAM genomic harmonized CPTAC3 6eb4e682-2784-4f2d-8250-496a40f3aeb2 79a1dbf1ef7deddf71d7c4b0692d1637 {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.RNA-Seq.S55_L005_R1.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ S55_L005_R1 submitted_unaligned CPTAC3 d5d4dee6-5523-43c9-902b-c019c3a29533 00c4fd479a32cf9cb27e1dd76c87e47c {"aliquot_tag": "ALQ_6a23d060", "sample": "S55", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.RNA-Seq.S55_L005_R2.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ S55_L005_R2 submitted_unaligned CPTAC3 92f769cc-3b94-4805-bef6-3de96959e898 bb91595c586526f3a8a51ddb8f2c94e8 {"aliquot_tag": "ALQ_6a23d060", "sample": "S55", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.RNA-Seq.transcriptome.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.transcriptome.gdc_realn.bam 8494219540 BAM transcriptome harmonized CPTAC3 64fb89ba-1729-4c24-acc0-e0ef0993887f 71b88336166adbc38108f3c1114b435a {"aliquot_tag": "ALQ_6a23d060", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.WGS.N C3N-04100 GBM WGS blood_normal CPT0285610002 CPT0285610002.WholeGenome.RP-2158.bam 21930007345 BAM submitted_aligned CPTAC3 7f74ed3f-e21c-4b44-84ad-49124953f987 3c9ea2075bac8d7319958b79fa0d44a5 {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04100.WGS.N.hg38 C3N-04100 GBM WGS blood_normal CPT0285610002 e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wgs_gdc_realn.bam 66740897940 BAM harmonized CPTAC3 4d339a11-7fe1-4768-9bce-01c4d959a1b5 3047418fcddb4de262e2224aad8db920 {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04100.WGS.T C3N-04100 GBM WGS tumor CPT0285590006 CPT0285590006.WholeGenome.RP-2158.bam 26982190290 BAM submitted_aligned CPTAC3 51d10bc6-e276-4f15-8be4-8f45643913a0 5cb342ee12bdf68d10b8816071c2c7b6 {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.WGS.T.hg38 C3N-04100 GBM WGS tumor CPT0285590006 60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wgs_gdc_realn.bam 78877872512 BAM harmonized CPTAC3 6655aea0-8f5c-4a62-813f-4afe372c81a3 c7f5f21aad21a761ecf4466ad90e3154 {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.WXS.N C3N-04100 GBM WXS blood_normal CPT0285610002 CPT0285610002.WholeExome.RP-1303.bam 28613971741 BAM submitted_aligned CPTAC3 738934dd-363d-4ce8-a743-616e0e07bfc7 46bad9dd8550c2a18a344b9341aa293a {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04100.WXS.N.hg38 C3N-04100 GBM WXS blood_normal CPT0285610002 e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wxs_gdc_realn.bam 38615780883 BAM harmonized CPTAC3 7c20addd-92b7-436e-b8c7-0e202439e2eb 3af2daa9322a9aeec3886dce704188d8 {"aliquot_tag": "ALQ_b2dbe8d8", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04100.WXS.T C3N-04100 GBM WXS tumor CPT0285590006 CPT0285590006.WholeExome.RP-1303.bam 20792557880 BAM submitted_aligned CPTAC3 0d3f613d-522c-463c-a8bd-b4616bb6745a 94e8b5cc8cbdf56ba3ac13c68b25ca2f {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04100.WXS.T.hg38 C3N-04100 GBM WXS tumor CPT0285590006 60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wxs_gdc_realn.bam 30013568056 BAM harmonized CPTAC3 645e357e-7bdf-4136-812c-e02db7f7fab0 c58cee09d0ac0a841dab9612a653bfc9 {"aliquot_tag": "ALQ_35215ae", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.MethArray.Green.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204367490093_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 67d72c45-fa2d-4cad-8582-0f19edbe887f d1e011e14c85077bdb8822de07f06e55 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.MethArray.Green.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204930630109_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a6c818e8-81f4-426d-bffa-0955e283e20c 1c00ec0a93169324b058c0f2797c8d29 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.MethArray.Red.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204367490093_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 fa6fcda1-b93e-4900-92fb-885e8ade614b 26e8d89e983ad6a3cb27385e0d70def6 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.MethArray.Red.T C3N-04113 GBM Methylation_Array tumor CPT0285620006 204930630109_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 df28f441-dc30-48e2-9879-7505d6adc086 0bd789f711f2878a10c8767c4954235f {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.miRNA-Seq.S19_L001_R1.T C3N-04113 GBM miRNA-Seq tumor CPT0285620009 200403_UNC31-K00269_0274_AHCF7GBBXY_TACAGC_S19_L001_R1_001.unaln.bam 270137881 BAM S19_L001_R1 submitted_unaligned CPTAC3 a7fa3f22-13ef-477e-9c36-96b8bb785f93 6baf863fd9d32accf03d39deafaa653b {"aliquot_tag": "ALQ_62a94b80", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.miRNA-Seq.T.hg38 C3N-04113 GBM miRNA-Seq tumor CPT0285620009 cea639d4-1aa7-4d7c-b599-0fea38b57497_mirnaseq_gdc_realn.bam 297734367 BAM harmonized CPTAC3 0e0a8eff-4408-44a7-a764-fad48d8c32f8 df910efdda6fb5bbc29664dbeaa8ed7d {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_7d56a3b1.MethArray.Green.T C3N-04113 GBM Methylation_Array tumor CPT0285640006 205555390176_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 75e8ad59-7e4e-4212-9e10-cc1650e4d469 a6ad99dea8e0330c9d418ed888135da5 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_7d56a3b1.MethArray.Red.T C3N-04113 GBM Methylation_Array tumor CPT0285640006 205555390176_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 01e08033-624d-46a3-a4de-b19d5a804ee5 05507d1faaaa0b674c092bbe4f943940 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_7d56a3b1.WGS.T C3N-04113 GBM WGS tumor CPT0285640006 CPT0285640006.WholeGenome.RP-2158.bam 28355549625 BAM submitted_aligned CPTAC3 ab315250-4cd5-431b-84e7-483d1db2b003 3c8d11f094f03f4df52ac934bcab5db3 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_7d56a3b1.WGS.T.hg38 C3N-04113 GBM WGS tumor CPT0285640006 1ac39c4d-4742-4eea-ac1a-074503b7b5a4_wgs_gdc_realn.bam 84901748163 BAM harmonized CPTAC3 316589c0-c980-491c-85cb-ed6085aa0239 c57f6aba5619f0fb1460eef684b1656f {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_7d56a3b1.WXS.T C3N-04113 GBM WXS tumor CPT0285640006 CPT0285640006.WholeExome.RP-1303.bam 23107973738 BAM submitted_aligned CPTAC3 96d34906-3b49-43f7-b624-7575ad5611ec c2f0d49eea3427fd0f075fab674f96f2 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_7d56a3b1.WXS.T.hg38 C3N-04113 GBM WXS tumor CPT0285640006 1ac39c4d-4742-4eea-ac1a-074503b7b5a4_wxs_gdc_realn.bam 32633163767 BAM harmonized CPTAC3 e4493502-3425-4529-96af-414aae684e99 c851ea0c3cf38982b87ddc572fa1f855 {"aliquot_tag": "REP_7d56a3b1", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04113.REP_ede9be20.miRNA-Seq.S10_L005_R1.T C3N-04113 GBM miRNA-Seq tumor CPT0285640009 210702_UNC32-K00270_0289_AHKJ22BBXY_CTTGTA_S10_L005_R1_001.unaln.bam 144320274 BAM S10_L005_R1 submitted_unaligned CPTAC3 10503913-3b14-490a-a103-7941a0d25454 dfa01d539dc19fdc75abadb6b3a98984 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_ede9be20.miRNA-Seq.S28_L003_R1.T C3N-04113 GBM miRNA-Seq tumor CPT0285640009 210817_UNC31-K00269_0302_AHLCTHBBXY_CTTGTA_S28_L003_R1_001.unaln.bam 94443326 BAM S28_L003_R1 submitted_unaligned CPTAC3 8c9c36e0-88de-4c2a-b050-381af131c584 231b766d5cee0439829924fcb672c53c {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S28", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_ede9be20.miRNA-Seq.T.hg38 C3N-04113 GBM miRNA-Seq tumor CPT0285640009 23c43fdb-733e-4927-9051-476c5eebfef6_mirnaseq_gdc_realn.bam 263608949 BAM harmonized CPTAC3 42ecff0b-6285-4019-8aab-be9148e5e484 363721ad955b57d7029f4d847e96c716 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_ede9be20.RNA-Seq.chimeric.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.chimeric.gdc_realn.bam 281328247 BAM chimeric harmonized CPTAC3 8d629461-d2d2-4c24-aed0-c1fa410e1244 acf8fc97b051def75c9186feb226ac86 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_ede9be20.RNA-Seq.genomic.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.genomic.gdc_realn.bam 8496679012 BAM genomic harmonized CPTAC3 54eee2ab-eb37-42ac-9240-dd66f9914ee0 dee1f251904178cdc0080719b7c5c22c {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_ede9be20.RNA-Seq.S75_L008_R1.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R1_001.fastq.gz 3959065989 FASTQ S75_L008_R1 submitted_unaligned CPTAC3 69aa2a6b-6027-49f3-8e36-3103637b7cb1 f586ef1488c669bd02c714c1c2d03b51 {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S75", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_ede9be20.RNA-Seq.S75_L008_R2.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ S75_L008_R2 submitted_unaligned CPTAC3 57e66976-7cfd-4dc7-960f-61b01cf53055 73c04986bc63d9b19b1f402db7a33eba {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "sample": "S75", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.REP_ede9be20.RNA-Seq.transcriptome.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.transcriptome.gdc_realn.bam 11134146453 BAM transcriptome harmonized CPTAC3 4cde65d1-ae2e-48f9-a702-c3e8297ce67f 33c754e614dd098f7de431a68e50082d {"aliquot_tag": "REP_ede9be20", "aliquot_annotation": "Duplicate item: Replacement RNA Aliquot ", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.RNA-Seq.chimeric.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.chimeric.gdc_realn.bam 30020882 BAM chimeric harmonized CPTAC3 a6b7bb5f-2cb9-4802-a2bf-04b099fe6fd8 bd42281aab61d67a75d9320f54f96516 {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.RNA-Seq.genomic.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.genomic.gdc_realn.bam 7257351546 BAM genomic harmonized CPTAC3 201c17d4-8c5f-4c8c-8fa4-829c9f0dbe0c 35d54c7703ced563e74531de43a3e077 {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.RNA-Seq.S3_L004_R1.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ S3_L004_R1 submitted_unaligned CPTAC3 9f0d3283-518d-4cbe-ac56-7f4cff984a77 2f081d269ba4839f78a1af74095b73b1 {"aliquot_tag": "ALQ_62a94b80", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.RNA-Seq.S3_L004_R2.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R2_001.fastq.gz 3851534424 FASTQ S3_L004_R2 submitted_unaligned CPTAC3 1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95 99f25205d09e2947c289dc0c34d3a98a {"aliquot_tag": "ALQ_62a94b80", "sample": "S3", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.RNA-Seq.transcriptome.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.transcriptome.gdc_realn.bam 8067312754 BAM transcriptome harmonized CPTAC3 9cc14cb9-79f2-4ddf-af13-ee6ae1c90e66 ed8209e2f8ce60d78a1b44744aefa540 {"aliquot_tag": "ALQ_62a94b80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.WGS.N C3N-04113 GBM WGS blood_normal CPT0285650002 CPT0285650002.WholeGenome.RP-2158.bam 29591689611 BAM submitted_aligned CPTAC3 88491985-2778-4634-b8ed-32a17626ad72 c9b4212007523ca3edf8027e82338068 {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04113.WGS.N.hg38 C3N-04113 GBM WGS blood_normal CPT0285650002 48f76814-e8a6-4689-ae08-37a3da4fbccf_wgs_gdc_realn.bam 91183903789 BAM harmonized CPTAC3 8a56868d-6456-4125-bd94-c89e0afdaeff fb7343f4e4926483b47990f66b663bd0 {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04113.WGS.T C3N-04113 GBM WGS tumor CPT0285620006 CPT0285620006.WholeGenome.RP-2158.bam 27745088896 BAM submitted_aligned CPTAC3 80115334-9ece-488f-b05f-03c26f207441 a09f615b04e741e7315b3f5d8bcfd439 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.WGS.T.hg38 C3N-04113 GBM WGS tumor CPT0285620006 5ad1a3d2-831b-405d-b7d9-7e1728337e25_wgs_gdc_realn.bam 81872292228 BAM harmonized CPTAC3 b4fdd133-7457-4a99-9621-b06aad5f7def 54953303ba85b449d8be407f0aaf75a4 {"aliquot_tag": "ALQ_f2165611", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04113.WXS.N C3N-04113 GBM WXS blood_normal CPT0285650002 CPT0285650002.WholeExome.RP-1303.bam 29786208134 BAM submitted_aligned CPTAC3 f0c8c00e-1b52-496e-9eaf-09da2938df9b 2d27afb21276d6f25ebad2c1b91406eb {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04113.WXS.N.hg38 C3N-04113 GBM WXS blood_normal CPT0285650002 48f76814-e8a6-4689-ae08-37a3da4fbccf_wxs_gdc_realn.bam 40739124735 BAM harmonized CPTAC3 a4e8f80c-7798-4472-9e9d-8a6cb4bfe9c5 34464320bcf13f1ad7f86e846160f5e5 {"aliquot_tag": "ALQ_475b4e18", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04119.MethArray.Green.A C3N-04119 PDA Methylation_Array tissue_normal CPT0237920007 203273630048_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 92c2f356-545e-4080-8b2a-df898113c2ee ab88e89c17d3c712f4f54cd23639f02d {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04119.MethArray.Green.T C3N-04119 PDA Methylation_Array tumor CPT0237910007 203561620008_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 efc75b36-c1da-4fa7-948f-a798a4838b5a 1ad15d30a97dd35e2791a5eb80f8e5d7 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.MethArray.Red.A C3N-04119 PDA Methylation_Array tissue_normal CPT0237920007 203273630048_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 03788187-1968-4a9d-8159-8cb73bbaaddd b00f902b97796d104ffa1093ef3253be {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04119.MethArray.Red.T C3N-04119 PDA Methylation_Array tumor CPT0237910007 203561620008_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 b5cacf99-32bb-44be-8568-bd50d2fba147 98f20e4937f894ff6dd4e3027452b630 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.miRNA-Seq.S13_L004_R1.T C3N-04119 PDA miRNA-Seq tumor CPT0237910010 190712_UNC32-K00270_0192_BH7HL3BBXY_CGGAAT_S13_L004_R1_001.unaln.bam 358918176 BAM S13_L004_R1 submitted_unaligned CPTAC3 6b31c026-40a9-44f1-b878-3a326b40c882 bba2acc3ea86fe7634daad51e033ac40 {"aliquot_tag": "ALQ_7e6d071f", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.miRNA-Seq.T.hg38 C3N-04119 PDA miRNA-Seq tumor CPT0237910010 b0ecf8cb-8488-41b2-9307-9b0fa9e88da3_mirnaseq_gdc_realn.bam 407416981 BAM harmonized CPTAC3 1389286c-e645-49b2-ba4b-b1851dc9a64a 82a005ac6d5555c4246f7fc8bb054687 {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.RNA-Seq.chimeric.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.chimeric.gdc_realn.bam 29830003 BAM chimeric harmonized CPTAC3 e197cb7e-a520-4e4f-b77c-25379314cfdf ac005f7bca0d213aea818676d4f273d8 {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.RNA-Seq.genomic.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.genomic.gdc_realn.bam 8114440100 BAM genomic harmonized CPTAC3 ca6322ce-f6c8-44d7-bf7a-532bfda010ec b7b6f0f84518f68e82bd2999c9aa4963 {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.RNA-Seq.S11_L003_R1.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R1_001.fastq.gz 3762694137 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 b8acb834-0c9a-426c-9a01-e28264df125e 2e519a5b9e715b1fc6d5b4b74af9e81f {"aliquot_tag": "ALQ_7e6d071f", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.RNA-Seq.S11_L003_R2.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R2_001.fastq.gz 4189091389 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 e56a5b19-b947-4c5a-a590-c6dc5851a6d7 c4a1c7969b5f5b45bf259df399387c32 {"aliquot_tag": "ALQ_7e6d071f", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.RNA-Seq.transcriptome.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.transcriptome.gdc_realn.bam 10657869193 BAM transcriptome harmonized CPTAC3 a3900c02-d514-4b04-a8a3-21cbbb94b9fd 7c07875161970812801d74c9dd23edab {"aliquot_tag": "ALQ_7e6d071f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.WGS.N C3N-04119 PDA WGS blood_normal CPT0237960002 CPT0237960002.WholeGenome.RP-1303.bam 71311817107 BAM submitted_aligned CPTAC3 4fdcf32b-0fba-4159-a1ca-a7e911ecdece 01dce3165a605481ab9504e9f67e713d {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04119.WGS.N.hg38 C3N-04119 PDA WGS blood_normal CPT0237960002 bfe5b115-f317-44bc-ae72-595d9a0fe7ad_wgs_gdc_realn.bam 103986103989 BAM harmonized CPTAC3 b8610c14-73e9-485b-9f23-36594cc52aaf c25a3e2db71f54b9b01648fe6bef3c17 {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04119.WGS.T C3N-04119 PDA WGS tumor CPT0237910007 CPT0237910007.WholeGenome.RP-1303.bam 145323251205 BAM submitted_aligned CPTAC3 0dd44f45-7e49-42d1-bd80-944296546768 9f271b2ccdf5a674f4dc656c095f4fda {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.WGS.T.hg38 C3N-04119 PDA WGS tumor CPT0237910007 eb856f0f-f9f8-4ef3-bcd7-824049ed9109_wgs_gdc_realn.bam 213343063223 BAM harmonized CPTAC3 1becad3b-33c5-4bad-b7ee-20ee2603f398 ad4a2d85525b11b140d1e1059daeae16 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.WXS.A C3N-04119 PDA WXS tissue_normal CPT0237920007 CPT0237920007.WholeExome.RP-1303.bam 24527691124 BAM submitted_aligned CPTAC3 dccf4d38-618c-4d59-8616-1a9bb36c7a0a b6948604123054268dab43c12d17b038 {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04119.WXS.A.hg38 C3N-04119 PDA WXS tissue_normal CPT0237920007 33f12f56-3c44-4a04-8d7c-e52f71a5fb44_wxs_gdc_realn.bam 32992142411 BAM harmonized CPTAC3 f46dc19d-6046-4653-a231-2713c86decf8 cad482a94c1887a3bc06d7986a4c8999 {"aliquot_tag": "ALQ_beb2d92d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04119.WXS.N C3N-04119 PDA WXS blood_normal CPT0237960002 CPT0237960002.WholeExome.RP-1303.bam 25563489185 BAM submitted_aligned CPTAC3 96adbda1-644a-43cf-98c2-f897e76a69bf c751ab81c8f1762c1eefae948241244b {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04119.WXS.N.hg38 C3N-04119 PDA WXS blood_normal CPT0237960002 bfe5b115-f317-44bc-ae72-595d9a0fe7ad_wxs_gdc_realn.bam 35287260526 BAM harmonized CPTAC3 abfd8f03-72a2-4d88-8b24-8f41d6b4ff7a fbe1ac5b5e250c78349e0e87b044792e {"aliquot_tag": "ALQ_3b588b62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04119.WXS.T C3N-04119 PDA WXS tumor CPT0237910007 CPT0237910007.WholeExome.RP-1303.bam 45477755365 BAM submitted_aligned CPTAC3 fcc03c59-6e22-4bae-91c9-6563f3e03f56 949755deecc0278cd8e72decd12637e0 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04119.WXS.T.hg38 C3N-04119 PDA WXS tumor CPT0237910007 eb856f0f-f9f8-4ef3-bcd7-824049ed9109_wxs_gdc_realn.bam 63560057138 BAM harmonized CPTAC3 92a2cc56-3493-4bdb-92f7-e86d64937b60 eb63566fa3b6bc70d4772463c93e1325 {"aliquot_tag": "ALQ_f912a3fd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.MethArray.Green.A C3N-04124 LSCC Methylation_Array tissue_normal CPT0237990006 203219650169_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 22ac14a5-590f-4003-b3c9-6557bb683a46 2a4f0656aaf46208272cd3eadc34b376 {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.MethArray.Green.T C3N-04124 LSCC Methylation_Array tumor CPT0237970010 203219650006_R07C01_Grn.idat 13676235 IDAT Green NA CPTAC3 ddaeaa7f-5206-486f-990e-cec8d970eddd eeeb8e4d6c6164c5bffca79b37180c77 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.MethArray.Red.A C3N-04124 LSCC Methylation_Array tissue_normal CPT0237990006 203219650169_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 fab80ef4-02af-45e1-ad31-ed0a2953aeff e43da38115de5e094547d56dfeb9e944 {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.MethArray.Red.T C3N-04124 LSCC Methylation_Array tumor CPT0237970010 203219650006_R07C01_Red.idat 13676235 IDAT Red NA CPTAC3 0bffdc1c-9b1c-4bbb-b890-248739d92c7e f1ff821723226cfd316d4fed5ef263b7 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.miRNA-Seq.A.hg38 C3N-04124 LSCC miRNA-Seq tissue_normal CPT0237990009 8dc7a7c9-717d-422d-ac25-de06922510f9_mirnaseq_gdc_realn.bam 235671946 BAM harmonized CPTAC3 4c695e6f-37e6-4bbf-98b5-9a42b401fa3b 4ec2a70397f3f6f6724f25340c4b6f20 {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.miRNA-Seq.S11_L005_R1.A C3N-04124 LSCC miRNA-Seq tissue_normal CPT0237990009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTCAGA_S11_L005_R1_001.unaln.bam 212713260 BAM S11_L005_R1 submitted_unaligned CPTAC3 cd41e3ac-3b2e-4c6a-977b-b7e98809a251 819a86b837517e69dcf84721443711cb {"aliquot_tag": "ALQ_2edac53b", "sample": "S11", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.miRNA-Seq.S4_L005_R1.T C3N-04124 LSCC miRNA-Seq tumor CPT0237970007 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGAAG_S4_L005_R1_001.unaln.bam 141260252 BAM S4_L005_R1 submitted_unaligned CPTAC3 da02f697-9aa6-4bea-914b-eac0633d0b62 20f607e55b3ee6b1a76a1284afb9fe93 {"aliquot_tag": "ALQ_7652565d", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.miRNA-Seq.T.hg38 C3N-04124 LSCC miRNA-Seq tumor CPT0237970007 b45e99ad-e3ed-4528-9875-2082923fba8b_mirnaseq_gdc_realn.bam 159372384 BAM harmonized CPTAC3 aeca6b53-14e5-492e-acc6-bfa5d3b9df8d cb472c70813778fb8f5de1d93d4813fe {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.RNA-Seq.chimeric.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.chimeric.gdc_realn.bam 67436184 BAM chimeric harmonized CPTAC3 d27582ad-38bb-4146-a147-766f5c4a72da 850a3905932a7d8c743b64e8ec5b20ce {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.RNA-Seq.chimeric.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.chimeric.gdc_realn.bam 81305870 BAM chimeric harmonized CPTAC3 7576aa30-7371-47ae-ad87-19f799492afa 996a472420f9a6e674e6a479c91539ac {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.RNA-Seq.genomic.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.genomic.gdc_realn.bam 6279010419 BAM genomic harmonized CPTAC3 e6e9400d-914e-4766-b909-4e8f081393e6 b3c3168abce27f3033337ad25480b235 {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.RNA-Seq.genomic.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.genomic.gdc_realn.bam 7504027970 BAM genomic harmonized CPTAC3 a802d1fc-df18-4531-9ed6-bcf57db44bd4 a680def1c0f0161f65b1a9a2ce7dfde3 {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.RNA-Seq.S10_L003_R1.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R1_001.fastq.gz 3424985645 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 e91f5b56-8457-4d6e-9318-67ee1dd7e479 c4eda7fc49ae4728772355cd9751a37b {"aliquot_tag": "ALQ_7652565d", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.RNA-Seq.S10_L003_R2.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R2_001.fastq.gz 3710808570 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 bf6eca83-92e5-4d01-9c37-9251246c999f 87b86c2bdab6bd64e9e29832c4523502 {"aliquot_tag": "ALQ_7652565d", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.RNA-Seq.S6_L002_R1.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R1_001.fastq.gz 3030908637 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 50e5a385-7c1b-407e-adff-0ded34d28d49 1066e63a38510967d3d51d4f566c6d19 {"aliquot_tag": "ALQ_2edac53b", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.RNA-Seq.S6_L002_R2.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R2_001.fastq.gz 3048395136 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 22917d3e-dcaf-42ad-9fb1-47ea45c06f21 85397e2d07a28f33e74a95eee6501b33 {"aliquot_tag": "ALQ_2edac53b", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.RNA-Seq.transcriptome.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.transcriptome.gdc_realn.bam 7081252380 BAM transcriptome harmonized CPTAC3 72d72512-9419-4c01-9389-809abc704abf df8e5d86d542a36a67a00e91d44e4d4c {"aliquot_tag": "ALQ_2edac53b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.RNA-Seq.transcriptome.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.transcriptome.gdc_realn.bam 8448184012 BAM transcriptome harmonized CPTAC3 bc05b469-09a6-4030-8f5f-ecb0b4b06b29 1388ffc6ff0042f127283eb4f66a0745 {"aliquot_tag": "ALQ_7652565d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.WGS.N C3N-04124 LSCC WGS blood_normal CPT0238030002 CPT0238030002.WholeGenome.RP-1303.bam 59391008128 BAM submitted_aligned CPTAC3 dac2b680-c4e7-4cd6-a0d8-7fc03fa01ede afc9ec51dcb46b46d45aa318dd45912a {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04124.WGS.N.hg38 C3N-04124 LSCC WGS blood_normal CPT0238030002 161e1a4d-b9b1-42fe-8399-2bc263936720_wgs_gdc_realn.bam 87586410762 BAM harmonized CPTAC3 9f83f046-a892-448f-92ff-0d84f2d9d9c3 7cd1ee7674fb19fc4f6a8e30e2a8108a {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04124.WGS.T C3N-04124 LSCC WGS tumor CPT0237970010 CPT0237970010.WholeGenome.RP-1303.bam 61597712549 BAM submitted_aligned CPTAC3 1d3d134f-ccd9-4e88-9146-2c302b07e303 ee88fad0e221c655a9d665624e809e5b {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.WGS.T.hg38 C3N-04124 LSCC WGS tumor CPT0237970010 0a7bcec4-396e-4a43-a17b-fca1aebf4e5e_wgs_gdc_realn.bam 90974854821 BAM harmonized CPTAC3 158d370c-a4a4-480e-bd8a-ee046d107d3b 5c7e8953e016272229f571f2cb284f8d {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.WXS.A C3N-04124 LSCC WXS tissue_normal CPT0237990006 CPT0237990006.WholeExome.RP-1303.bam 17092107194 BAM submitted_aligned CPTAC3 bcdc0962-da40-4c2b-8391-a0118a5c55d1 3ab957ed49dfc626b8f2aa8e4bc40248 {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.WXS.A.hg38 C3N-04124 LSCC WXS tissue_normal CPT0237990006 580cd9de-5d69-42af-832b-c88756d8006f_wxs_gdc_realn.bam 23865027921 BAM harmonized CPTAC3 6b0a09ca-9272-4c7d-9f99-91ffb19ff34a 245179634cb9b40aa6b2ceeaf74e28af {"aliquot_tag": "ALQ_be65d8aa", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04124.WXS.N C3N-04124 LSCC WXS blood_normal CPT0238030002 CPT0238030002.WholeExome.RP-1303.bam 22558182037 BAM submitted_aligned CPTAC3 747aec44-3fcc-4ce3-9893-7114f2dee9b4 671e786555bc34e01544b398112040be {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04124.WXS.N.hg38 C3N-04124 LSCC WXS blood_normal CPT0238030002 161e1a4d-b9b1-42fe-8399-2bc263936720_wxs_gdc_realn.bam 31497467430 BAM harmonized CPTAC3 45bbd6b6-b949-43fa-a5be-5eaf426405b6 7e6417b7eb00e02f9b95030942e73a7f {"aliquot_tag": "ALQ_22ff2533", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04124.WXS.T C3N-04124 LSCC WXS tumor CPT0237970010 CPT0237970010.WholeExome.RP-1303.bam 29704534966 BAM submitted_aligned CPTAC3 a1622e4e-b685-41f3-a5c5-794c36ab0c77 2979cd9ee543a3ed84769827c3817763 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04124.WXS.T.hg38 C3N-04124 LSCC WXS tumor CPT0237970010 0a7bcec4-396e-4a43-a17b-fca1aebf4e5e_wxs_gdc_realn.bam 41431277364 BAM harmonized CPTAC3 80431699-b13f-4a48-bf2f-a30e17a2db53 59df658dc2387c073faf4cac2102c022 {"aliquot_tag": "ALQ_f12df2bf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04125.MethArray.Green.A C3N-04125 LSCC Methylation_Array tissue_normal CPT0330820006 204930630107_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f47b92c7-d60f-49ba-a64f-50c72196431d 3e4407636904b55647a3d69f6ed6c462 {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.MethArray.Green.T C3N-04125 LSCC Methylation_Array tumor CPT0330800007 204930640082_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 64fb4df4-23b3-499a-b9c1-ff282b559259 36f7da5dc50c55634d65431366de8f84 {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.MethArray.Red.A C3N-04125 LSCC Methylation_Array tissue_normal CPT0330820006 204930630107_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 632febd6-883a-4bb6-9de2-f2da8326c84f d850b73017bb4f5b2fd1aca8943c2a8a {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.MethArray.Red.T C3N-04125 LSCC Methylation_Array tumor CPT0330800007 204930640082_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 65c1e59a-fe3f-424b-9d5c-c7749eb0fce6 1af2174a4263d093f2db6a8d330fc0e8 {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.miRNA-Seq.A.hg38 C3N-04125 LSCC miRNA-Seq tissue_normal CPT0330820009 abf649e2-0f4c-42f4-a964-a35cb20be110_mirnaseq_gdc_realn.bam 259225378 BAM harmonized CPTAC3 765ab5e6-a4e3-4744-adf9-7e4ceb9d7776 0d721493bc2e8c869a379a707008723b {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.miRNA-Seq.S25_L007_R1.T C3N-04125 LSCC miRNA-Seq tumor CPT0330800010 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTTCC_S25_L007_R1_001.unaln.bam 346270654 BAM S25_L007_R1 submitted_unaligned CPTAC3 cf729db9-03ae-4db8-a5c9-a9468f1fb0bd 69d9dac7d93933b53155578f2eaf0949 {"aliquot_tag": "ALQ_5a8dd7c7", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.miRNA-Seq.S7_L007_R1.A C3N-04125 LSCC miRNA-Seq tissue_normal CPT0330820009 201209_UNC32-K00270_0265_AHJ55WBBXY_CACCGG_S7_L007_R1_001.unaln.bam 235786181 BAM S7_L007_R1 submitted_unaligned CPTAC3 be8395f3-aa6b-4335-8fe3-8c714754796e c664bf44dab3c25a462fda24334fb153 {"aliquot_tag": "ALQ_408a0d42", "sample": "S7", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.miRNA-Seq.T.hg38 C3N-04125 LSCC miRNA-Seq tumor CPT0330800010 ca62a282-1699-4bcb-8b96-35a13cc1a2c6_mirnaseq_gdc_realn.bam 382619328 BAM harmonized CPTAC3 1917b218-3fad-4250-88a4-ae9f669ca623 190bc741176fc58870974dd7ae0c619b {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.RNA-Seq.chimeric.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.chimeric.gdc_realn.bam 242779375 BAM chimeric harmonized CPTAC3 d16dbce1-88ba-4580-a1eb-14e6ef745bbe d836d77485f4e13f47cd9fb259eb834a {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.RNA-Seq.chimeric.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.chimeric.gdc_realn.bam 271729178 BAM chimeric harmonized CPTAC3 de83dfd7-65c4-4aa3-b2c2-09d0de84f91e ab662e7dc195ba5dd3a75a588901469a {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.RNA-Seq.genomic.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.genomic.gdc_realn.bam 6246682953 BAM genomic harmonized CPTAC3 a2cf4d60-0d3c-4640-91f8-10015599cd24 709d48e3225ed7dffc911189d031ef1b {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.RNA-Seq.genomic.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.genomic.gdc_realn.bam 7579152848 BAM genomic harmonized CPTAC3 40057ec1-87db-4e6c-af78-728a0191957f 643b8988323d62c8c6872f55f2f64959 {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.RNA-Seq.S12_L003_R1.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 3093237294 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 702ac9ca-7e6e-48ee-a162-13536b0378b6 8c682323deee4e1105e34700b9686249 {"aliquot_tag": "ALQ_408a0d42", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.RNA-Seq.S12_L003_R2.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 3271914743 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 2fdfef3a-5922-4158-81fc-d9c462eb95e6 2a98d09075e8e73f0a532c0456946567 {"aliquot_tag": "ALQ_408a0d42", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.RNA-Seq.S28_L007_R1.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R1_001.fastq.gz 3905362326 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 4f5333d2-f5e8-4238-93cc-a43a1d94750e 65ad4f909f5752d94e987520e4809bea {"aliquot_tag": "ALQ_5a8dd7c7", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.RNA-Seq.S28_L007_R2.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R2_001.fastq.gz 4220282539 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 e72caf0c-fb26-4d24-b284-a15ed7df1ed0 231c9af82aeb330b50ede11dfa74e3ca {"aliquot_tag": "ALQ_5a8dd7c7", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.RNA-Seq.transcriptome.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.transcriptome.gdc_realn.bam 6708889573 BAM transcriptome harmonized CPTAC3 6fe2941b-a2de-42f3-a59f-d6b623a78d94 579d5411c6be779d143171a3e67d90cf {"aliquot_tag": "ALQ_408a0d42", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.RNA-Seq.transcriptome.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.transcriptome.gdc_realn.bam 13733886163 BAM transcriptome harmonized CPTAC3 74d87c9a-4519-45b2-88cf-daea7d6dbd17 258737f25c5563276a27191845b78837 {"aliquot_tag": "ALQ_5a8dd7c7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.WGS.N C3N-04125 LSCC WGS blood_normal CPT0330890002 CPT0330890002.WholeGenome.RP-2158.bam 23494158499 BAM submitted_aligned CPTAC3 9090021d-c5a0-4767-bfbb-cbe66143f9a5 45f2e2d633cd65ea929e79119aeff56b {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04125.WGS.N.hg38 C3N-04125 LSCC WGS blood_normal CPT0330890002 f7e61ace-2364-4c15-922a-027505c69855_wgs_gdc_realn.bam 69948689386 BAM harmonized CPTAC3 df89fa76-416d-4b99-923e-f200c4e7d39b a7adb3d0741e81576dab67c7c75443b1 {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04125.WGS.T C3N-04125 LSCC WGS tumor CPT0330800007 CPT0330800007.WholeGenome.RP-2158.bam 22713160615 BAM submitted_aligned CPTAC3 7c9b9f19-1419-4c85-99ce-14da8c77a074 54121c197ba837f0a22c892f6c324dc5 {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.WGS.T.hg38 C3N-04125 LSCC WGS tumor CPT0330800007 b7840b33-00c3-453a-af05-db06e1448187_wgs_gdc_realn.bam 68834926184 BAM harmonized CPTAC3 e59720d3-a3f7-44e5-ba2c-07754a80f3e7 ab090d8591adecfeb081d41c0ca6c72b {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.WXS.A C3N-04125 LSCC WXS tissue_normal CPT0330820006 CPT0330820006.WholeExome.RP-1303.bam 19769989073 BAM submitted_aligned CPTAC3 0acce9d3-f89c-4f80-ba9c-d7c92085faa4 0fc317a02e810dd1f178ca20ab0d43d9 {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04125.WXS.A.hg38 C3N-04125 LSCC WXS tissue_normal CPT0330820006 ef1d0274-c548-41d4-9b09-0a26e8fe5c02_wxs_gdc_realn.bam 27486307001 BAM harmonized CPTAC3 f1ef17fd-fc34-4814-a2dc-bae23111e3cc 30d0cd55c78c44132d00a5b18e75dc20 {"aliquot_tag": "ALQ_d03510d3", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04125.WXS.N C3N-04125 LSCC WXS blood_normal CPT0330890002 CPT0330890002.WholeExome.RP-1303.bam 20926657494 BAM submitted_aligned CPTAC3 4091c798-b3a7-4ebf-bf7c-8a7cc2056390 a9809d4a337814a3ee6301f56d5d0f3c {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04125.WXS.N.hg38 C3N-04125 LSCC WXS blood_normal CPT0330890002 f7e61ace-2364-4c15-922a-027505c69855_wxs_gdc_realn.bam 29467914092 BAM harmonized CPTAC3 968f6fcc-eb5e-492d-b6cb-4d640d9d2cff c4714d881004967fac1dc31c72c0aec7 {"aliquot_tag": "ALQ_a088e5db", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04125.WXS.T C3N-04125 LSCC WXS tumor CPT0330800007 CPT0330800007.WholeExome.RP-1303.bam 19641445624 BAM submitted_aligned CPTAC3 ba3a911e-f0de-4cc1-ad53-50ba0a3eda4e f39d8c19a751a81b00102097acbd7bdc {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04125.WXS.T.hg38 C3N-04125 LSCC WXS tumor CPT0330800007 b7840b33-00c3-453a-af05-db06e1448187_wxs_gdc_realn.bam 26947805505 BAM harmonized CPTAC3 e7104e56-5eb2-4d47-9917-f07123e3022a 35cbf73326f734f12d1f7485ed86639b {"aliquot_tag": "ALQ_ddf27325", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04126.MethArray.Green.T C3N-04126 PDA Methylation_Array tumor CPT0238040008 203561450020_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 ac999305-a5af-4b55-80f5-4c4e13e3338b 90a76284b2439a27889559a34cab9852 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.MethArray.Red.T C3N-04126 PDA Methylation_Array tumor CPT0238040008 203561450020_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 20963994-15a5-4666-8a85-b7f7e2dd7835 dca0e1f6635c852ed62c326632be6af0 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.miRNA-Seq.S14_L004_R1.T C3N-04126 PDA miRNA-Seq tumor CPT0238040011 190712_UNC32-K00270_0192_BH7HL3BBXY_CTAGCT_S14_L004_R1_001.unaln.bam 262982977 BAM S14_L004_R1 submitted_unaligned CPTAC3 45a79f8a-05be-4e50-b742-a1894c6a19ab 298792ef813e5cb355e8e0b98c7f0d63 {"aliquot_tag": "ALQ_10cd99d8", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.miRNA-Seq.T.hg38 C3N-04126 PDA miRNA-Seq tumor CPT0238040011 ea3d05c5-d103-44f7-bfbf-1b204471753d_mirnaseq_gdc_realn.bam 296371313 BAM harmonized CPTAC3 60a39e27-347b-4d29-83ad-89235bd5b4b0 970cd2bd1a755cbcabe4557544b52d79 {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.RNA-Seq.chimeric.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.chimeric.gdc_realn.bam 42726772 BAM chimeric harmonized CPTAC3 4fa21603-a840-4565-a14d-99d765def56c c9163ea880673a5151f8cfeeabf6e7ea {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.RNA-Seq.genomic.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.genomic.gdc_realn.bam 10206979343 BAM genomic harmonized CPTAC3 ffaa3ec7-af96-48af-ae09-27e22c35b21f 340287636b43103fed0ead7fbcc5e30b {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.RNA-Seq.S10_L003_R1.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R1_001.fastq.gz 4684069459 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 35bc239c-6aff-408b-afa3-dcebcb5e3f05 220dd64d49f7e5ecc78dc03b31d29be3 {"aliquot_tag": "ALQ_10cd99d8", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.RNA-Seq.S10_L003_R2.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R2_001.fastq.gz 5065805986 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 0c465402-f38f-49cb-9c73-bcc141ded2cf 9fc41b3323ea7f349a82592f9400e661 {"aliquot_tag": "ALQ_10cd99d8", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.RNA-Seq.transcriptome.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.transcriptome.gdc_realn.bam 11749325788 BAM transcriptome harmonized CPTAC3 829037c3-a4d4-4706-8677-1269b564f35a 2a77b72852cca541b45668f1f8b9212f {"aliquot_tag": "ALQ_10cd99d8", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.WGS.N C3N-04126 PDA WGS blood_normal CPT0238100002 CPT0238100002.WholeGenome.RP-1303.bam 60905500633 BAM submitted_aligned CPTAC3 c323fa59-8454-48c4-bdb6-dec49fee1680 19a83a083b9db1f7ffc53292b7800691 {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04126.WGS.N.hg38 C3N-04126 PDA WGS blood_normal CPT0238100002 7ca1a7f0-7de3-4ac6-9b56-af840d83d463_wgs_gdc_realn.bam 88803296322 BAM harmonized CPTAC3 e6899c13-9355-4f15-92c0-af79b70fcdf6 d341705ce3287295eebc4ea031a79695 {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04126.WGS.T C3N-04126 PDA WGS tumor CPT0238040008 CPT0238040008.WholeGenome.RP-1303.bam 141836154597 BAM submitted_aligned CPTAC3 c0a5ae9a-3aa2-4cf8-8cc3-9e8bc0bf2b2d ba3acee7c5931197d90cba951e5ccb1a {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.WGS.T.hg38 C3N-04126 PDA WGS tumor CPT0238040008 cda94bf3-c5f3-49b7-89ad-e31cf301f12d_wgs_gdc_realn.bam 207232661003 BAM harmonized CPTAC3 ad71fa8c-a7d8-474b-8218-8ecbb1bdf3d7 ae2ec5acf6d3c1041399cde50f1932a2 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.WXS.N C3N-04126 PDA WXS blood_normal CPT0238100002 CPT0238100002.WholeExome.RP-1303.bam 33018932612 BAM submitted_aligned CPTAC3 ac1dae34-e1df-40ef-8c50-32a13c58869c 91cbb62292987e5c3638e9a2c063506f {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04126.WXS.N.hg38 C3N-04126 PDA WXS blood_normal CPT0238100002 7ca1a7f0-7de3-4ac6-9b56-af840d83d463_wxs_gdc_realn.bam 45588567421 BAM harmonized CPTAC3 13130b21-bb87-4799-be7a-da3ed86175c3 8f1d694a39709bd863501aa60166a986 {"aliquot_tag": "ALQ_ae038c46", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04126.WXS.T C3N-04126 PDA WXS tumor CPT0238040008 CPT0238040008.WholeExome.RP-1303.bam 43383882285 BAM submitted_aligned CPTAC3 ada4a56a-9f95-4d58-96a0-c425e2808fd4 74a31170bb369cd60a4e7882a5e3adf7 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04126.WXS.T.hg38 C3N-04126 PDA WXS tumor CPT0238040008 cda94bf3-c5f3-49b7-89ad-e31cf301f12d_wxs_gdc_realn.bam 60378221864 BAM harmonized CPTAC3 eac7d1ac-a38c-41cb-b38f-329cde637848 f2f4bfa1a258cde4681e615ce22672e7 {"aliquot_tag": "ALQ_700a103d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.MethArray.Green.A C3N-04127 LSCC Methylation_Array tissue_normal CPT0238130006 203219720203_R04C01_Grn.idat 13676220 IDAT Green NA CPTAC3 ab279103-dc51-456c-9439-ef95fd8e3d55 c52827fc26f603626254316bd6eb517c {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.MethArray.Green.T C3N-04127 LSCC Methylation_Array tumor CPT0238110010 203220070151_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ec599e4a-1dc6-440d-bf91-e9b8ae76c88d 9c296fe432d6c019f7fb6dbd662f2c1a {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.MethArray.Red.A C3N-04127 LSCC Methylation_Array tissue_normal CPT0238130006 203219720203_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 a887ae74-a009-4c53-b59f-0637fe747a27 47c590a622fb596c032c1b071d536018 {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.MethArray.Red.T C3N-04127 LSCC Methylation_Array tumor CPT0238110010 203220070151_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 c7876edb-8294-46ee-aa76-a3a409305d6b dcd26df678c4b85039ab5c241c36bf45 {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.miRNA-Seq.A.hg38 C3N-04127 LSCC miRNA-Seq tissue_normal CPT0238130009 bbc297ef-1361-4d13-b3fa-8db816d19b83_mirnaseq_gdc_realn.bam 203090310 BAM harmonized CPTAC3 92fad97a-361c-4ca3-9e1b-cd5a89b71318 0bf2829e1f57e59c282e9844b86c0ad6 {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.miRNA-Seq.S10_L005_R1.A C3N-04127 LSCC miRNA-Seq tissue_normal CPT0238130009 190206_UNC31-K00269_0191_AH2WY5BBXY_GACGAC_S10_L005_R1_001.unaln.bam 179100710 BAM S10_L005_R1 submitted_unaligned CPTAC3 82102071-03b6-4622-8384-657162eb91f8 8bf9104e9c5075ececea3b337431ed95 {"aliquot_tag": "ALQ_7e712f1e", "sample": "S10", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.miRNA-Seq.S3_L005_R1.T C3N-04127 LSCC miRNA-Seq tumor CPT0238110007 190206_UNC31-K00269_0191_AH2WY5BBXY_TCGGCA_S3_L005_R1_001.unaln.bam 145551348 BAM S3_L005_R1 submitted_unaligned CPTAC3 86d1796d-d349-41be-ad1d-73bc5081da60 85099cdff66b2fa992a2a9d46cb7f58c {"aliquot_tag": "ALQ_e3095179", "sample": "S3", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.miRNA-Seq.T.hg38 C3N-04127 LSCC miRNA-Seq tumor CPT0238110007 befe36fc-543d-445b-af9d-e4794497aa2e_mirnaseq_gdc_realn.bam 162460971 BAM harmonized CPTAC3 2c2319e5-118f-4cac-93f3-c6a07ecfeef8 8ded7aca8bfb74ab71c577fba45f784f {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.RNA-Seq.chimeric.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.chimeric.gdc_realn.bam 79246141 BAM chimeric harmonized CPTAC3 4a02f239-ea77-4e05-8595-d183bd0889b7 b83392cbfad9d64d6301a85be7c2770c {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.RNA-Seq.chimeric.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.chimeric.gdc_realn.bam 72920468 BAM chimeric harmonized CPTAC3 39e2337b-976c-4e46-a264-5cc90f36ed78 4cb53e57fab4110552396a6c6962b233 {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.RNA-Seq.genomic.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.genomic.gdc_realn.bam 9910411638 BAM genomic harmonized CPTAC3 e2d258fd-a677-48d2-b1d0-c508f82450c6 609a068a444dddfd9d769c8efd5af217 {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.RNA-Seq.genomic.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.genomic.gdc_realn.bam 7550047180 BAM genomic harmonized CPTAC3 9cf1bc14-fb91-41c5-bbc1-847d72211a08 2a8de2c76714270a86022bf7ea233627 {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.RNA-Seq.S12_L003_R1.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R1_001.fastq.gz 3356194614 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 6d3b1cb1-6867-4e56-9338-2ac8c1bf659d 0afe2bf4ece2da589e3643fd1436b9d0 {"aliquot_tag": "ALQ_e3095179", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.RNA-Seq.S12_L003_R2.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R2_001.fastq.gz 3700840039 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 3ab3cd4e-9ade-47ac-9a1b-242050f0d731 cb65a5d2de89878f8ca154bb9709f6b6 {"aliquot_tag": "ALQ_e3095179", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.RNA-Seq.S4_L007_R1.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R1_001.fastq.gz 4534378721 FASTQ S4_L007_R1 submitted_unaligned CPTAC3 ae07e32e-d225-422d-859a-71d95ae2ad13 832505c37c171e21e178309ced605c69 {"aliquot_tag": "ALQ_7e712f1e", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.RNA-Seq.S4_L007_R2.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R2_001.fastq.gz 5236762817 FASTQ S4_L007_R2 submitted_unaligned CPTAC3 9c5814c9-8297-4011-9036-c8f311ff7c0a c6e642eb2bd11615849448c811f2ce65 {"aliquot_tag": "ALQ_7e712f1e", "sample": "S4", "lane": "L007", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.RNA-Seq.transcriptome.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.transcriptome.gdc_realn.bam 11293387427 BAM transcriptome harmonized CPTAC3 a52545de-5467-4e7b-ac8f-aee523eacf38 96cd6d99c09e30ccf978f05aa1a30c94 {"aliquot_tag": "ALQ_7e712f1e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.RNA-Seq.transcriptome.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.transcriptome.gdc_realn.bam 9999790850 BAM transcriptome harmonized CPTAC3 3f03960e-6fd6-44a1-a1bb-4a5efec21803 0a51af3bc88c92921633d0ee4ebcba47 {"aliquot_tag": "ALQ_e3095179", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.WGS.N C3N-04127 LSCC WGS blood_normal CPT0238170002 CPT0238170002.WholeGenome.RP-1303.bam 54195489488 BAM submitted_aligned CPTAC3 4dd0fcef-d27e-4ac1-b947-88adfa1581db 10251931ce9b0acb55541e05009b03cb {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04127.WGS.N.hg38 C3N-04127 LSCC WGS blood_normal CPT0238170002 f41b6b00-bcda-49b7-81c6-5660d2da8d56_wgs_gdc_realn.bam 79207707961 BAM harmonized CPTAC3 e52b65fb-1537-4b1e-830c-ae5ca45be4dc b4795066090b31b4422046f7d67ec9c2 {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04127.WGS.T C3N-04127 LSCC WGS tumor CPT0238110010 CPT0238110010.WholeGenome.RP-1303.bam 64375878286 BAM submitted_aligned CPTAC3 864a7882-c289-4462-8655-91d0a3fd350c afd5bad4f609e06ae85126b824cc56f5 {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.WGS.T.hg38 C3N-04127 LSCC WGS tumor CPT0238110010 c1b6681d-491b-4738-a2a7-d3363b2b9f4e_wgs_gdc_realn.bam 94280348655 BAM harmonized CPTAC3 3ec95f53-5eda-456d-9d2c-220d7ec82c08 51b9fb853f90c5b6ccd9cab5945c5352 {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.WXS.A C3N-04127 LSCC WXS tissue_normal CPT0238130006 CPT0238130006.WholeExome.RP-1303.bam 22328470984 BAM submitted_aligned CPTAC3 9314abcc-37af-4545-90f0-d23bb272bebf 14f1c052e5f250070341c14c2d266963 {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.WXS.A.hg38 C3N-04127 LSCC WXS tissue_normal CPT0238130006 babd6c22-cafe-48ad-962b-4cf613bf9973_wxs_gdc_realn.bam 30620453203 BAM harmonized CPTAC3 e6284a1b-0655-49ae-9ef0-d643873aa9dc d9e93194ad2873ccd9d2a14efe3f09f1 {"aliquot_tag": "ALQ_eece328f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04127.WXS.N C3N-04127 LSCC WXS blood_normal CPT0238170002 CPT0238170002.WholeExome.RP-1303.bam 25819868729 BAM submitted_aligned CPTAC3 048afda2-93cc-4e5c-94f0-72937153f694 860df76070331b35cd82dbe64778dacc {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04127.WXS.N.hg38 C3N-04127 LSCC WXS blood_normal CPT0238170002 f41b6b00-bcda-49b7-81c6-5660d2da8d56_wxs_gdc_realn.bam 35495837871 BAM harmonized CPTAC3 3dd87d7b-e998-40c8-811c-359e9f82a263 f248c31ad45d342431e15b24d6982b86 {"aliquot_tag": "ALQ_1c235056", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04127.WXS.T C3N-04127 LSCC WXS tumor CPT0238110010 CPT0238110010.WholeExome.RP-1303.bam 18751551737 BAM submitted_aligned CPTAC3 939830d0-5119-4a89-a4c5-b679534e68a9 3c5a13c3c9b44a47dc7543e862cf578a {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04127.WXS.T.hg38 C3N-04127 LSCC WXS tumor CPT0238110010 c1b6681d-491b-4738-a2a7-d3363b2b9f4e_wxs_gdc_realn.bam 26103182783 BAM harmonized CPTAC3 e83f0336-0a89-4545-8479-d1a1dc01d99d 1d7fc59be3cfcfe4c76f93b51202d72c {"aliquot_tag": "ALQ_6476f59b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04138.MethArray.Green.T C3N-04138 LSCC Methylation_Array tumor CPT0331000007 204930630086_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 04eca087-34b0-4f4b-a724-8ec1cdd910a2 146b15d1fdd5fd15453155fdb709173d {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.MethArray.Red.T C3N-04138 LSCC Methylation_Array tumor CPT0331000007 204930630086_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 7befd1fd-07d7-4825-b12a-951006970263 d9c5656ffacc9da24ccd4212c86fadca {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.miRNA-Seq.A.hg38 C3N-04138 LSCC miRNA-Seq tissue_normal CPT0331020006 ec1541d4-bfe8-466b-9b48-ee5e6230a261_mirnaseq_gdc_realn.bam 362181419 BAM harmonized CPTAC3 df46f43e-24b2-4a04-b799-408dce3ec502 8feb65c5a64055c585efb38db38bb756 {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04138.miRNA-Seq.S26_L007_R1.T C3N-04138 LSCC miRNA-Seq tumor CPT0331000010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGTCA_S26_L007_R1_001.unaln.bam 265870736 BAM S26_L007_R1 submitted_unaligned CPTAC3 c395220d-eea6-4cf2-ac5e-247384b3e3aa e3ec0c5d350fe3bda4f994ffae358aa7 {"aliquot_tag": "ALQ_10a95e1e", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.miRNA-Seq.S8_L006_R1.A C3N-04138 LSCC miRNA-Seq tissue_normal CPT0331020006 201209_UNC32-K00270_0265_AHJ55WBBXY_CACGAT_S8_L006_R1_001.unaln.bam 335240834 BAM S8_L006_R1 submitted_unaligned CPTAC3 8351eea0-1ee3-4047-b0da-6d7acbcad059 504f99927ceb546eb9d386d1bd163899 {"aliquot_tag": "ALQ_9a11990a", "sample": "S8", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04138.miRNA-Seq.T.hg38 C3N-04138 LSCC miRNA-Seq tumor CPT0331000010 917361fd-a3b9-48ec-a961-72cf33c124b9_mirnaseq_gdc_realn.bam 282197753 BAM harmonized CPTAC3 f24f22ab-b573-4ff4-aa46-166513346b75 07bfd2e3a337bc113962d98edb0ed27d {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.RNA-Seq.chimeric.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.chimeric.gdc_realn.bam 129300260 BAM chimeric harmonized CPTAC3 82525903-dd8c-4251-858a-02371efb07e5 f419f3889048dbbd8869904bcc7f55fa {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04138.RNA-Seq.chimeric.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.chimeric.gdc_realn.bam 267487878 BAM chimeric harmonized CPTAC3 30be77c4-0c0d-4a89-8a39-674af1482398 e0edcf79a6ec5625f2edc988656a0cdf {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.RNA-Seq.genomic.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.genomic.gdc_realn.bam 5782022234 BAM genomic harmonized CPTAC3 fd251ce0-a9c6-4a9a-a080-c3cb0bc14e1e 69781f4dc4f9e2e2ac3baeffbba5b2f6 {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04138.RNA-Seq.genomic.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.genomic.gdc_realn.bam 8061105047 BAM genomic harmonized CPTAC3 48326000-1d18-48c1-ba2d-f42ef09bda00 23cc31b0616b051288793278a2a73569 {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.RNA-Seq.S10_L003_R1.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R1_001.fastq.gz 2765503985 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 3e115e28-d175-4c14-ae40-3ccba22fab84 4c71f58330c7f6a52202857c7e0dc5be {"aliquot_tag": "ALQ_9a11990a", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04138.RNA-Seq.S10_L003_R2.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R2_001.fastq.gz 2970136492 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 3b79257c-871d-4e0e-99e7-3024bc78d0e1 cf1c9299608146bd271bcbd02438864f {"aliquot_tag": "ALQ_9a11990a", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04138.RNA-Seq.S27_L007_R1.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R1_001.fastq.gz 4031983308 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 3fc427a9-70d7-4182-a316-f528f080ccd8 ad91378fc02c95b5ab020ae3ca55e853 {"aliquot_tag": "ALQ_10a95e1e", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.RNA-Seq.S27_L007_R2.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R2_001.fastq.gz 4378549451 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 12eebe5b-3249-49a2-9394-4cb8c0151e21 57abdf95bfe917a4a985a0ae9e3f2131 {"aliquot_tag": "ALQ_10a95e1e", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.RNA-Seq.transcriptome.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.transcriptome.gdc_realn.bam 6237704256 BAM transcriptome harmonized CPTAC3 397c388b-557a-41e0-8b49-c99fbfea0f69 6101427e637c22bc1ee1e3bb9699e126 {"aliquot_tag": "ALQ_9a11990a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04138.RNA-Seq.transcriptome.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.transcriptome.gdc_realn.bam 12309782023 BAM transcriptome harmonized CPTAC3 205fd9fa-671b-4a14-818f-d0f3a09562c2 3f63d294e4aff705c2b402546af0ce6c {"aliquot_tag": "ALQ_10a95e1e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.WGS.N C3N-04138 LSCC WGS blood_normal CPT0331090002 CPT0331090002.WholeGenome.RP-2158.bam 21805976070 BAM submitted_aligned CPTAC3 dbc67567-3103-4284-80aa-b3f6bf3b0a65 811d1c1d9ef54ed3d57705133760d7ba {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04138.WGS.N.hg38 C3N-04138 LSCC WGS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wgs_gdc_realn.bam 64174428871 BAM harmonized CPTAC3 f3c3ad85-139b-44ab-993e-71819c0e8aed ed65c0ceecc3a03702cf2a464072171a {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04138.WGS.T C3N-04138 LSCC WGS tumor CPT0331000007 CPT0331000007.WholeGenome.RP-2158.bam 27914789343 BAM submitted_aligned CPTAC3 ef545b12-556c-4747-9567-1d471b7315f1 67d2d120b6842abc306d1d23010af99e {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.WGS.T.hg38 C3N-04138 LSCC WGS tumor CPT0331000007 643307d3-9e81-4b95-9874-c43004fd1203_wgs_gdc_realn.bam 84007956301 BAM harmonized CPTAC3 0aa40e0f-e8f0-48db-9519-aafe276c7fac 4bd89f758d65fbef72472b3922630a5b {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.WXS.N C3N-04138 LSCC WXS blood_normal CPT0331090002 CPT0331090002.WholeExome.RP-1303.bam 28694395073 BAM submitted_aligned CPTAC3 452ddcbf-da03-4208-8679-d7bc2f7a670f d04c9ffed3251467fe810e74c1d6c1e5 {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04138.WXS.N.hg38 C3N-04138 LSCC WXS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wxs_gdc_realn.bam 40369608923 BAM harmonized CPTAC3 fb6ee426-38fc-461a-b08f-dc6ba3fc6d53 a54f7f11a203362d83a50770cd69383c {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04138.WXS.T C3N-04138 LSCC WXS tumor CPT0331000007 CPT0331000007.WholeExome.RP-1303.bam 19694203636 BAM submitted_aligned CPTAC3 4d3904df-d98f-425b-902d-1d83fd6e3a1b 2083839e8ab1cbcbaa3b0c49bf5f9b9b {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04138.WXS.T.hg38 C3N-04138 LSCC WXS tumor CPT0331000007 643307d3-9e81-4b95-9874-c43004fd1203_wxs_gdc_realn.bam 27641153087 BAM harmonized CPTAC3 4cc82681-a96f-4cf5-88fb-17fe9301efc5 6f299b925e22a8609014f10e83f0319a {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04151.RNA-Seq.chimeric.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.chimeric.gdc_realn.bam 201299357 BAM chimeric harmonized CPTAC3 10305f60-0348-4c62-a527-ec17f842558d 33125b511db82795aab443c8deff3083 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04151.RNA-Seq.genomic.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.genomic.gdc_realn.bam 9613176271 BAM genomic harmonized CPTAC3 beeb8b6e-fa5f-4470-9b67-725b4831f61b 43a7a584c0ff42fed62b31ea091660f1 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04151.RNA-Seq.S40_R1.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R1_001.fastq.gz 5881869402 FASTQ S40_R1 submitted_unaligned CPTAC3 1d703603-8fb9-4fa5-b995-6c362b4c63bd 931204979bdfc0a588e7ba7a7e0de572 {"aliquot_tag": "ALQ_2d5ce63e", "sample": "S40", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04151.RNA-Seq.S40_R2.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R2_001.fastq.gz 6165305786 FASTQ S40_R2 submitted_unaligned CPTAC3 eda55b2a-4104-4793-8da2-e79b4826e144 c31b4d4cf95b297bf11644d2cca7f729 {"aliquot_tag": "ALQ_2d5ce63e", "sample": "S40", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04151.RNA-Seq.transcriptome.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.transcriptome.gdc_realn.bam 6174806206 BAM transcriptome harmonized CPTAC3 f408c514-33e0-4856-a57d-abefce025e52 938ce0ba9b7734b89bec39f9992edf50 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04152.MethArray.Green.A C3N-04152 HNSCC Methylation_Array tissue_normal CPT0224000006 203271740111_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 6a9d95d0-966f-4036-8ed8-980e9f25367c aa7a73beb38782b71f16bdf78c3f9167 {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.MethArray.Green.T C3N-04152 HNSCC Methylation_Array tumor CPT0223970006 203271750083_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f70db15c-d972-4771-a19f-e6cfe4fce5fc 55ddcaa2380adad074a79310c6a93f9e {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.MethArray.Red.A C3N-04152 HNSCC Methylation_Array tissue_normal CPT0224000006 203271740111_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 665b88f0-7e75-46ef-a394-52c77c818da1 099af1c28ef8daaeae486b76ae8e5dab {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.MethArray.Red.T C3N-04152 HNSCC Methylation_Array tumor CPT0223970006 203271750083_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 ed4ab37d-52e5-44c8-b038-7f2ee8768657 3d6c4c52626cf061470742c7c6c983dc {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.miRNA-Seq.A.hg38 C3N-04152 HNSCC miRNA-Seq tissue_normal CPT0224000009 599664c0-b576-40a6-b26d-6b954a7d7854_mirnaseq_gdc_realn.bam 272662681 BAM harmonized CPTAC3 01ed6502-f680-4751-a33c-015e1b1247a6 6334a11815c8143168b4a756153ad6bf {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.miRNA-Seq.S13_L005_R1.A C3N-04152 HNSCC miRNA-Seq tissue_normal CPT0224000009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L005_R1_001.unaln.bam 240382314 BAM S13_L005_R1 submitted_unaligned CPTAC3 57a22ee5-50bc-4bba-bde1-f4fd3124f591 417d3a191d2e3d180dd09859e4558ed8 {"aliquot_tag": "ALQ_f987ec81", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.miRNA-Seq.S29_L004_R1.T C3N-04152 HNSCC miRNA-Seq tumor CPT0223970009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L004_R1_001.unaln.bam 157288546 BAM S29_L004_R1 submitted_unaligned CPTAC3 54b745e2-d0e9-473f-b098-bed3f1619887 0fbac96c7ee18f88a99e490e9f98b00a {"aliquot_tag": "ALQ_a90f5fd7", "sample": "S29", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.miRNA-Seq.T.hg38 C3N-04152 HNSCC miRNA-Seq tumor CPT0223970009 47293791-e73b-4c9b-af0c-9094d632517d_mirnaseq_gdc_realn.bam 174631420 BAM harmonized CPTAC3 1ff1bfdf-5efb-41ef-9d58-708459dddc34 880e7dd7443690d7ddb0de5bb4725736 {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.chimeric.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.chimeric.gdc_realn.bam 29140297 BAM chimeric harmonized CPTAC3 12120245-0de2-4219-a570-1ce78a2e63ab ea19b3bb9fbce7573beb4f9d444493b9 {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.RNA-Seq.chimeric.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.chimeric.gdc_realn.bam 258737460 BAM chimeric harmonized CPTAC3 400850e8-37b3-47e5-975f-424cd88d3ff3 fef811c92587d7f94c5d568746bd80d8 {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.chimeric.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.chimeric.gdc_realn.bam 162896427 BAM chimeric harmonized CPTAC3 6dcb6efb-2668-450b-b94f-e9aca3bdf384 dd0eb48a072a78b2658dcc2879411f2e {"aliquot_tag": "ALQ_d3277c42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.genomic.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.genomic.gdc_realn.bam 8650690199 BAM genomic harmonized CPTAC3 ab8382cb-505f-4050-8247-1d01fa93477e 17804308b6806fbcc47e8d0e6d4839ae {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.RNA-Seq.genomic.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.genomic.gdc_realn.bam 8789726788 BAM genomic harmonized CPTAC3 66094884-d08a-49a0-a61c-27e7b16c8533 efdb874f66714c1e780ecca03a55076d {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.genomic.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.genomic.gdc_realn.bam 8284010310 BAM genomic harmonized CPTAC3 b6c32021-f064-4367-ab0a-202242a3c1bf 66926e97895b17fbc6427954266a3ee6 {"aliquot_tag": "ALQ_d3277c42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.S27_L006_R1.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R1_001.fastq.gz 4194048409 FASTQ S27_L006_R1 submitted_unaligned CPTAC3 0996e53b-0079-4766-84a8-fd2930e6c7e0 ef795f2ba7ac431a16c5f3ff17d9e403 {"aliquot_tag": "ALQ_f987ec81", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.RNA-Seq.S27_L006_R2.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R2_001.fastq.gz 4605646955 FASTQ S27_L006_R2 submitted_unaligned CPTAC3 6d81b875-ee76-4cb8-8e1d-2d8e8338800d d1791abfac19980fcf227d01d52d0469 {"aliquot_tag": "ALQ_f987ec81", "sample": "S27", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.RNA-Seq.S74_R1.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R1_001.fastq.gz 5124447192 FASTQ S74_R1 submitted_unaligned CPTAC3 ca9e9400-2b81-401b-a309-cfd1526a881a f7ded11042b7bd727db017f4bb8f22f9 {"aliquot_tag": "ALQ_d3277c42", "sample": "S74", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.S74_R2.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R2_001.fastq.gz 5360897002 FASTQ S74_R2 submitted_unaligned CPTAC3 617da4f7-6fc4-4ea9-bc81-c637d7670400 d0b57a15f400f8e10f4d63825de358d4 {"aliquot_tag": "ALQ_d3277c42", "sample": "S74", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.S9_L003_R1.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3915129007 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 592d75c4-07b3-4b9f-9256-b3b8419d5b35 8c6de182cd3eb541b5d13c102086d8ad {"aliquot_tag": "ALQ_a90f5fd7", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.S9_L003_R2.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4453728627 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 4f30070d-b7da-464c-abe7-92bb0cbfc671 db41ef7b319f4e22e5a40a75f8dd5611 {"aliquot_tag": "ALQ_a90f5fd7", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.transcriptome.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.transcriptome.gdc_realn.bam 12816884414 BAM transcriptome harmonized CPTAC3 9684b0b7-b469-472e-80bf-301ac6cfbabb 338537260c889f85fad3c317ce71a723 {"aliquot_tag": "ALQ_f987ec81", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.RNA-Seq.transcriptome.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.transcriptome.gdc_realn.bam 11645886355 BAM transcriptome harmonized CPTAC3 94988e7a-2c1f-4aaa-94bd-5498a6eb252e 30607943f95b36f8e95fb4a94640c7d3 {"aliquot_tag": "ALQ_a90f5fd7", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.RNA-Seq.transcriptome.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.transcriptome.gdc_realn.bam 4731182657 BAM transcriptome harmonized CPTAC3 42d1e38a-48bd-43cc-8519-954a182f19c9 8b2d4e43371e5e86d89836095634c6c4 {"aliquot_tag": "ALQ_d3277c42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.WGS.N C3N-04152 HNSCC WGS blood_normal CPT0224090002 CPT0224090002.WholeGenome.RP-1303.bam 78306707451 BAM submitted_aligned CPTAC3 99cc4072-31ef-42e4-9fed-953a43db1706 be950352c585ba4dd6b5117e38c87882 {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04152.WGS.N.hg38 C3N-04152 HNSCC WGS blood_normal CPT0224090002 1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wgs_gdc_realn.bam 114941800553 BAM harmonized CPTAC3 cf5b4b80-e867-49b7-b668-6791a9c78a12 75abd5ad7fb6fd86aa154da0a0b6c27a {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04152.WGS.T C3N-04152 HNSCC WGS tumor CPT0223970006 CPT0223970006.WholeGenome.RP-1303.bam 66052492900 BAM submitted_aligned CPTAC3 511c3e3b-1223-4f21-86f6-5a377854ee72 a8e92f87b3c6cee81de45c6b38e06d66 {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.WGS.T.hg38 C3N-04152 HNSCC WGS tumor CPT0223970006 a6669705-0fcf-4d00-bb0e-d04dac02ec6f_wgs_gdc_realn.bam 96017317076 BAM harmonized CPTAC3 2f55c32e-f1ca-46a4-90b4-57bc4ad0b61e b5abeeeb1a8560829bbd6ebc9c4b6dea {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.WXS.A C3N-04152 HNSCC WXS tissue_normal CPT0224000006 CPT0224000006.WholeExome.RP-1303.bam 22331975758 BAM submitted_aligned CPTAC3 1dd9bc0b-67fa-4d95-9e88-99ede97d00db b44223c2e6682007338fb9c647c9aac5 {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.WXS.A.hg38 C3N-04152 HNSCC WXS tissue_normal CPT0224000006 4e28a145-062c-4cd5-a419-db788ebf8dd2_wxs_gdc_realn.bam 30916912632 BAM harmonized CPTAC3 9e7af6c9-28b6-4670-bd4d-9e863e369933 a18b9fb7a2217a8c5ede1d69a871149b {"aliquot_tag": "ALQ_6938f110", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04152.WXS.N C3N-04152 HNSCC WXS blood_normal CPT0224090002 CPT0224090002.WholeExome.RP-1303.bam 22742722573 BAM submitted_aligned CPTAC3 cf63bcf2-eefa-43f1-a60f-3a4e6cc83cdf b8588d3b72907efb3548a0337c7fcf83 {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04152.WXS.N.hg38 C3N-04152 HNSCC WXS blood_normal CPT0224090002 1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wxs_gdc_realn.bam 31011742430 BAM harmonized CPTAC3 d182cfa9-ce18-41e1-a75e-9012d3a4d590 8d1a00300506a2b4f87dababb7a42266 {"aliquot_tag": "ALQ_63455778", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04152.WXS.T C3N-04152 HNSCC WXS tumor CPT0223970006 CPT0223970006.WholeExome.RP-1303.bam 22800065161 BAM submitted_aligned CPTAC3 921dcac7-6f04-4d81-8479-6d1d01a66a21 6b16a80d57bd6ef0457adb4ab6cb238a {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04152.WXS.T.hg38 C3N-04152 HNSCC WXS tumor CPT0223970006 a6669705-0fcf-4d00-bb0e-d04dac02ec6f_wxs_gdc_realn.bam 31866404405 BAM harmonized CPTAC3 2c751d69-412d-462c-b1b5-8b25e6b6f9cd 6666e0c150271c38a13bc2d1ac4f2409 {"aliquot_tag": "ALQ_39b04246", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04153.RNA-Seq.chimeric.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.chimeric.gdc_realn.bam 130018895 BAM chimeric harmonized CPTAC3 5f9f085b-4a8e-42fe-9bf3-0985f13d05bf a9ff1a1197de92326964988c1b1bbbbf {"aliquot_tag": "ALQ_6ac53e74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04153.RNA-Seq.genomic.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.genomic.gdc_realn.bam 7698188775 BAM genomic harmonized CPTAC3 d1eab65e-1b37-479b-a3c7-fc38c53e9295 95680ebb3230407b94af5331be847b0a {"aliquot_tag": "ALQ_6ac53e74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04153.RNA-Seq.S36_R1.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R1_001.fastq.gz 4814166545 FASTQ S36_R1 submitted_unaligned CPTAC3 1951dd3d-b3bd-4373-bd66-c9d8e031b122 6ec89c448bedc1e34f26181db6b991a6 {"aliquot_tag": "ALQ_6ac53e74", "sample": "S36", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04153.RNA-Seq.S36_R2.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R2_001.fastq.gz 5061610434 FASTQ S36_R2 submitted_unaligned CPTAC3 02683534-5fb5-4446-9fbf-3f71a7d1eb28 a402ca2a002ecfd874d99088d8fd0020 {"aliquot_tag": "ALQ_6ac53e74", "sample": "S36", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04153.RNA-Seq.transcriptome.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.transcriptome.gdc_realn.bam 5118912427 BAM transcriptome harmonized CPTAC3 c127de33-3dca-4f06-92e3-d051416fb966 ac705d24f9fc4f5c8d6c77ddde81f08e {"aliquot_tag": "ALQ_6ac53e74", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04155.MethArray.Green.A C3N-04155 LSCC Methylation_Array tissue_normal CPT0223820006 203219650065_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ca5763bf-5d1e-43d6-990c-82f43d5ce9fc 7a61814d6f9f51e70ccf785734d46867 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04155.MethArray.Green.T C3N-04155 LSCC Methylation_Array tumor CPT0223790006 203219650065_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 25002167-92d7-47aa-975a-499008b3ae01 f43d5264d1fe09be2f650d6d05012867 {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.MethArray.Red.A C3N-04155 LSCC Methylation_Array tissue_normal CPT0223820006 203219650065_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 fd9accea-5209-4d83-b3e9-231ca109eb80 4d28f52c3e29de24a32ba072fbde9fc4 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04155.MethArray.Red.T C3N-04155 LSCC Methylation_Array tumor CPT0223790006 203219650065_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 39c93522-378b-4271-9f10-0448112f5c54 3d475bf72d99d31cf5ccdfcd11cb39bc {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.miRNA-Seq.S13_L006_R1.T C3N-04155 LSCC miRNA-Seq tumor CPT0223790009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L006_R1_001.unaln.bam 224315099 BAM S13_L006_R1 submitted_unaligned CPTAC3 e1dafc40-9e2d-4383-a3b2-1453656accc8 ce7b2380f598eb284f66ff9e5529f7a1 {"aliquot_tag": "ALQ_2c3580c6", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.miRNA-Seq.T.hg38 C3N-04155 LSCC miRNA-Seq tumor CPT0223790009 da5d0274-376c-4cfe-a1ca-236b93a9b32d_mirnaseq_gdc_realn.bam 261978344 BAM harmonized CPTAC3 f5d2bb65-b200-4f4c-8ff5-f119aa9cce53 f7fe54f4465a043ffeff975a45ffa658 {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.RNA-Seq.chimeric.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.chimeric.gdc_realn.bam 60361160 BAM chimeric harmonized CPTAC3 953b7cea-b24c-4de5-b326-46e9f6d2a295 7148785525a0b1293b8a2a0498d46992 {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.RNA-Seq.genomic.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.genomic.gdc_realn.bam 9081337661 BAM genomic harmonized CPTAC3 862f40c9-a587-412f-89a0-e65a7ff7312f 87d32423e487e44a55db52a2a6019a2d {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.RNA-Seq.S2_L006_R1.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R1_001.fastq.gz 4223748945 FASTQ S2_L006_R1 submitted_unaligned CPTAC3 45c5331a-3808-400a-84a7-b7032b7d45de 985b5231d5e087e2de0e3232071f6b91 {"aliquot_tag": "ALQ_2c3580c6", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.RNA-Seq.S2_L006_R2.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R2_001.fastq.gz 4485362072 FASTQ S2_L006_R2 submitted_unaligned CPTAC3 8269e2b1-5920-47e5-b852-0ec27bd2d29e 2a01618e73f40544ffab034dfa2535aa {"aliquot_tag": "ALQ_2c3580c6", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.RNA-Seq.transcriptome.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.transcriptome.gdc_realn.bam 11466747049 BAM transcriptome harmonized CPTAC3 1ad65ff5-f3ff-41bd-9874-ba246549de5f cd97a900c66c3794ffc6a4110ddf9da1 {"aliquot_tag": "ALQ_2c3580c6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.WGS.N C3N-04155 LSCC WGS blood_normal CPT0223910002 CPT0223910002.WholeGenome.RP-1303.bam 53210378576 BAM submitted_aligned CPTAC3 c743421e-44e7-4da0-a7be-8644ae05dd79 5d766b91369b8d2f11507fbd813813cd {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04155.WGS.N.hg38 C3N-04155 LSCC WGS blood_normal CPT0223910002 4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wgs_gdc_realn.bam 77919095694 BAM harmonized CPTAC3 cad85f10-c277-4559-99fb-32517840e29a 6724a2a8136774493143394a89638efa {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04155.WGS.T C3N-04155 LSCC WGS tumor CPT0223790006 CPT0223790006.WholeGenome.RP-1303.bam 62668740071 BAM submitted_aligned CPTAC3 bafa4975-e387-4741-99a9-a8b0d48b5157 e3974257519b6a8b0791b7feff6ad009 {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.WGS.T.hg38 C3N-04155 LSCC WGS tumor CPT0223790006 78718394-bc16-4c02-b49f-511db21da76c_wgs_gdc_realn.bam 88791753543 BAM harmonized CPTAC3 8bcc15f0-0132-4b03-9ba4-b134b6b7bb34 d471368c50c46a50d5713632af6f380d {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.WXS.A C3N-04155 LSCC WXS tissue_normal CPT0223820006 CPT0223820006.WholeExome.RP-1303.bam 24026911934 BAM submitted_aligned CPTAC3 aa034fc7-0014-494b-83c7-3cc2dbe47632 621bc057045795b8e0b30c914d232bf2 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04155.WXS.A.hg38 C3N-04155 LSCC WXS tissue_normal CPT0223820006 11fa2928-1d7a-49f6-9cd1-87c934b6ecaf_wxs_gdc_realn.bam 33143918129 BAM harmonized CPTAC3 449211e5-68a8-4c62-90d2-6f747b233564 94611d87b560b3707e7e9c24c2e1f305 {"aliquot_tag": "ALQ_3a0c1e93", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04155.WXS.N C3N-04155 LSCC WXS blood_normal CPT0223910002 CPT0223910002.WholeExome.RP-1303.bam 28905931555 BAM submitted_aligned CPTAC3 9541b8bc-8625-418b-bfea-0f6e668b4946 5df9dbe1be09476c68d7d8f6a80515f4 {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04155.WXS.N.hg38 C3N-04155 LSCC WXS blood_normal CPT0223910002 4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wxs_gdc_realn.bam 39803597688 BAM harmonized CPTAC3 e178ecd2-6264-4ec0-bc22-2c22db576e5f 08b90ed4c1f2fbf4e85acaf0ac939e90 {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04155.WXS.T C3N-04155 LSCC WXS tumor CPT0223790006 CPT0223790006.WholeExome.RP-1303.bam 27432374996 BAM submitted_aligned CPTAC3 49b45954-a500-432c-8b5c-7fd92c2fa4c3 1f1938eb572b80275f85a563457888df {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04155.WXS.T.hg38 C3N-04155 LSCC WXS tumor CPT0223790006 78718394-bc16-4c02-b49f-511db21da76c_wxs_gdc_realn.bam 38063383676 BAM harmonized CPTAC3 a4161921-2f2d-4c03-bada-17523cad8eb9 909adda042eedb6e0fa4c619e811742e {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.MethArray.Green.A C3N-04157 LUAD Methylation_Array tissue_normal CPT0251200006 203561620016_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bbd9d62d-b19d-4fd4-857a-330a40e27d0c 2be2f030f2624136e3a42507472ca1af {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.MethArray.Green.T C3N-04157 LUAD Methylation_Array tumor CPT0251180006 203561450048_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62534f25-a644-4082-86db-2fc888d983ef 31ba2cfad4a1293cb31ef36cd15f7bd7 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.MethArray.Red.A C3N-04157 LUAD Methylation_Array tissue_normal CPT0251200006 203561620016_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 25304c76-afca-414c-aecb-10beecbb533f d6268f260ff0bc1e7fe15372f8af1e46 {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.MethArray.Red.T C3N-04157 LUAD Methylation_Array tumor CPT0251180006 203561450048_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 ada2464d-6bb3-4bae-9b98-9e58408c33f9 0b3b5b19120157a8e5fa656f136b589b {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.miRNA-Seq.A.hg38 C3N-04157 LUAD miRNA-Seq tissue_normal CPT0251200009 2707c58f-6966-4a2d-a985-2e8e1601c7d8_mirnaseq_gdc_realn.bam 243508556 BAM harmonized CPTAC3 d27940f3-e678-495e-a34d-3c5d832898bc 2f0ab54a9b26188d8d099877ba86b097 {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.miRNA-Seq.S20_L004_R1.T C3N-04157 LUAD miRNA-Seq tumor CPT0251180013 190712_UNC32-K00270_0192_BH7HL3BBXY_TATAAT_S20_L004_R1_001.unaln.bam 206201655 BAM S20_L004_R1 submitted_unaligned CPTAC3 1a63221d-85f5-48cd-8930-054f90ef2744 9a92a4c92db2979984c542ac310219ae {"aliquot_tag": "ALQ_a3988a04", "sample": "S20", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.miRNA-Seq.S37_L006_R1.A C3N-04157 LUAD miRNA-Seq tissue_normal CPT0251200009 190722_UNC31-K00269_0234_AH7VGTBBXY_TATAAT_S37_L006_R1_001.unaln.bam 218023784 BAM S37_L006_R1 submitted_unaligned CPTAC3 1fd5265e-7538-4d49-8831-095689a691be 4e73ba0e0e6f2c8efed3046e32927bf0 {"aliquot_tag": "ALQ_ecb26b34", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.miRNA-Seq.T.hg38 C3N-04157 LUAD miRNA-Seq tumor CPT0251180013 13a152b0-3ccf-4886-91cb-340a59bff3c3_mirnaseq_gdc_realn.bam 227056931 BAM harmonized CPTAC3 9a370143-301d-4574-8150-bc9ae101eab9 b738a0aadd6c8f34342eb5479dbfcde3 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.RNA-Seq.chimeric.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.chimeric.gdc_realn.bam 28712752 BAM chimeric harmonized CPTAC3 68d2f8e7-94ae-43f8-9350-60b2b7023f2f db2ba3c56c96d0a1d28d9777d85f19b4 {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.RNA-Seq.chimeric.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.chimeric.gdc_realn.bam 26941313 BAM chimeric harmonized CPTAC3 ded10bdb-88cc-417c-a5b6-3d3bca4dd94c e3f765bb2eddec61122222c3ec1f57c4 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.RNA-Seq.genomic.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.genomic.gdc_realn.bam 12804974156 BAM genomic harmonized CPTAC3 b4d9cb6f-d0b0-4328-9650-3c20b3233c3e eca574097f2f220b7d034c04b578327b {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.RNA-Seq.genomic.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.genomic.gdc_realn.bam 7584667596 BAM genomic harmonized CPTAC3 06eee5e5-c418-40aa-b7c8-e84e6370cff7 72deba56c2d417eb48eb99d84f1699c5 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.RNA-Seq.S3_L001_R1.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 4038517228 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 ce00ba5d-0966-409c-9374-f87417c13f43 f35d9cf023038ce353c27d8f97f3975a {"aliquot_tag": "ALQ_ecb26b34", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.RNA-Seq.S3_L001_R1.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 3537356620 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 17c4c6e0-c720-42a4-9468-1ff583b77600 716078a913798027f1feb6f40d7ee137 {"aliquot_tag": "ALQ_a3988a04", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.RNA-Seq.S3_L001_R2.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 4543386407 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 48e7303d-c4cd-4b51-a2da-3b6270f5c3cc 982b026392d3a9dc4f6bee0d68eb2f09 {"aliquot_tag": "ALQ_ecb26b34", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.RNA-Seq.S3_L001_R2.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 3873947965 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 c87793ec-46b5-4d9c-badf-c8067bfa0597 edb11e4df7a7611434c4192ef783b0f9 {"aliquot_tag": "ALQ_a3988a04", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.RNA-Seq.transcriptome.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.transcriptome.gdc_realn.bam 8865049646 BAM transcriptome harmonized CPTAC3 7545efab-dbd0-43d8-851d-182245fbb563 40d822282544291ac0a27cfae311522c {"aliquot_tag": "ALQ_ecb26b34", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.RNA-Seq.transcriptome.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.transcriptome.gdc_realn.bam 8993669239 BAM transcriptome harmonized CPTAC3 4063b478-ecd1-4594-89df-3c92df28098e 122cb07d82b2ed5edb1c5b726e8867c5 {"aliquot_tag": "ALQ_a3988a04", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.WGS.N C3N-04157 LUAD WGS blood_normal CPT0251290002 CPT0251290002.WholeGenome.RP-1303.bam 63029138165 BAM submitted_aligned CPTAC3 168f26f4-b3d5-40f1-b5ca-84127cbaac70 54802477d009d95e9da401d6aa2827c4 {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04157.WGS.N.hg38 C3N-04157 LUAD WGS blood_normal CPT0251290002 fee32560-8cce-466c-abf6-1a732c5ed2a0_wgs_gdc_realn.bam 91231808613 BAM harmonized CPTAC3 84153e0f-0b09-40db-b5b7-d65fe981258f 53154f2f54ca7f5a14822b01734459bf {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04157.WGS.T C3N-04157 LUAD WGS tumor CPT0251180006 CPT0251180006.WholeGenome.RP-1303.bam 59828491320 BAM submitted_aligned CPTAC3 c1fb8d89-d91a-4419-91ec-65d293b9821b 053feeba465532e38d9f83629feb91a6 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.WGS.T.hg38 C3N-04157 LUAD WGS tumor CPT0251180006 58547ca2-ad3a-435c-8475-e89753be99a7_wgs_gdc_realn.bam 86665697608 BAM harmonized CPTAC3 fa55fcc0-ac46-40cc-ad0f-56302e7ac4c2 d3fc8c1dcd48c719e0b79b56b93c28f4 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.WXS.A C3N-04157 LUAD WXS tissue_normal CPT0251200006 CPT0251200006.WholeExome.RP-1303.bam 19015726097 BAM submitted_aligned CPTAC3 8098db97-86d2-4f77-b6b5-e5820387b677 133195d736de342d13b18f12e69d9a36 {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.WXS.A.hg38 C3N-04157 LUAD WXS tissue_normal CPT0251200006 02ae89ac-c0af-4edb-8b97-049eff8170f8_wxs_gdc_realn.bam 26710973014 BAM harmonized CPTAC3 04b66161-f219-4e4b-8e3c-f018d780d4ec ca119ad59f390c94c4757a20e6fd2d8a {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04157.WXS.N C3N-04157 LUAD WXS blood_normal CPT0251290002 CPT0251290002.WholeExome.RP-1303.bam 26143535745 BAM submitted_aligned CPTAC3 4c08e906-c819-48fc-943a-74dd2d481bae 8845d715198f6ae6f32d9c794dc4d8ed {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04157.WXS.N.hg38 C3N-04157 LUAD WXS blood_normal CPT0251290002 fee32560-8cce-466c-abf6-1a732c5ed2a0_wxs_gdc_realn.bam 35885298377 BAM harmonized CPTAC3 d9a75f24-d422-459c-af8a-a9d8fff4cb16 567152aa0ef2842946295c1dd2a291da {"aliquot_tag": "ALQ_7670d0cd", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04157.WXS.T C3N-04157 LUAD WXS tumor CPT0251180006 CPT0251180006.WholeExome.RP-1303.bam 23062936324 BAM submitted_aligned CPTAC3 8c935b6d-cb54-454b-a936-0022196f2c4b dc7660db34cfaa5edc8c98eda21b321d {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04157.WXS.T.hg38 C3N-04157 LUAD WXS tumor CPT0251180006 58547ca2-ad3a-435c-8475-e89753be99a7_wxs_gdc_realn.bam 31605901682 BAM harmonized CPTAC3 b0f2ec05-6722-4e3d-941d-12ffb5a84979 67c2e9833d6a6992de0d48edcb4928e9 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.MethArray.Green.T C3N-04162 LSCC Methylation_Array tumor CPT0222730006 203219760065_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 142343ef-14b7-4ad7-ad97-c39e1fd83508 de5ea225094a570e45cecddec2135def {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.MethArray.Red.T C3N-04162 LSCC Methylation_Array tumor CPT0222730006 203219760065_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 40f49885-956a-4a63-9fe8-b71aa6ff4b1b 98d6f9699bf84ec075b4cd284aeac2e6 {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.miRNA-Seq.A.hg38 C3N-04162 LSCC miRNA-Seq tissue_normal CPT0222740006 cf1610b8-cd1a-40e0-baf1-8b008c7771ec_mirnaseq_gdc_realn.bam 167117706 BAM harmonized CPTAC3 f3b25a16-578e-428a-822e-469b6183e81d cddbe1ff8b042c9cd94204acf58f819d {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04162.miRNA-Seq.S37_L002_R1.T C3N-04162 LSCC miRNA-Seq tumor CPT0222730009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTTGTA_S37_L002_R1_001.unaln.bam 150984471 BAM S37_L002_R1 submitted_unaligned CPTAC3 04792287-cdb8-45c6-8137-e1b497570c1c e8e6ea46ee73faebf8c618ed89fe9713 {"aliquot_tag": "ALQ_c0f293d3", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.miRNA-Seq.S9_L005_R1.A C3N-04162 LSCC miRNA-Seq tissue_normal CPT0222740006 190206_UNC31-K00269_0191_AH2WY5BBXY_TAATCG_S9_L005_R1_001.unaln.bam 149494734 BAM S9_L005_R1 submitted_unaligned CPTAC3 41bc2504-7b02-49cb-bdac-77677c36763e c11094dd5e494b7c0de7f16df2b127ae {"aliquot_tag": "ALQ_e26d5252", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04162.miRNA-Seq.T.hg38 C3N-04162 LSCC miRNA-Seq tumor CPT0222730009 dd091697-f395-4671-95e2-b2bf2133a8ff_mirnaseq_gdc_realn.bam 164381081 BAM harmonized CPTAC3 cafe578d-6189-4c83-8deb-888401cbdc57 27069d7dc013620602a5c48c5a6276a7 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.RNA-Seq.chimeric.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.chimeric.gdc_realn.bam 147601459 BAM chimeric harmonized CPTAC3 0c30f0a6-f85a-4b6a-8bd6-44c649d668bc 12aa3ef7e8eed06148c1b9e170767921 {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04162.RNA-Seq.chimeric.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.chimeric.gdc_realn.bam 58014560 BAM chimeric harmonized CPTAC3 7b319e58-af09-42af-8228-35c5f3373b02 0ae5047698a2423f6dfaed297c352560 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.RNA-Seq.genomic.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.genomic.gdc_realn.bam 10129008281 BAM genomic harmonized CPTAC3 ccb539c4-8567-4c3e-93aa-d8ffd4736003 ec2a79108ea4c31278515dc2cd8567ac {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04162.RNA-Seq.genomic.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.genomic.gdc_realn.bam 8841113738 BAM genomic harmonized CPTAC3 7105963b-4879-42fd-9387-100b21c5462b 827395cb0255cbb78c68fcfdee22df94 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.RNA-Seq.S19_L005_R1.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R1_001.fastq.gz 3922357305 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 ed1ec1fe-03c0-47b4-9922-147935abb916 d3663e2e9708bf7ed901b0b562a42144 {"aliquot_tag": "ALQ_c0f293d3", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.RNA-Seq.S19_L005_R2.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R2_001.fastq.gz 4239447924 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 386d1cec-0df1-448c-a907-6c9967e1d7a6 f281fdb7f63b112e2099b041aa2e1555 {"aliquot_tag": "ALQ_c0f293d3", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.RNA-Seq.S7_L008_R1.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R1_001.fastq.gz 4231764884 FASTQ S7_L008_R1 submitted_unaligned CPTAC3 76a3f97a-3352-4be2-bed3-bdef4fd3596e b8b919b059876d7c6079323900e2b6be {"aliquot_tag": "ALQ_e26d5252", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04162.RNA-Seq.S7_L008_R2.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R2_001.fastq.gz 4513521442 FASTQ S7_L008_R2 submitted_unaligned CPTAC3 5473c738-dafa-4387-8108-b66d7ae02c66 3b66c06012aed495e2401dae660f411c {"aliquot_tag": "ALQ_e26d5252", "sample": "S7", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04162.RNA-Seq.transcriptome.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.transcriptome.gdc_realn.bam 9174118949 BAM transcriptome harmonized CPTAC3 d6ef0f6d-14c4-4108-a999-5bf7eeafe8ab bfcf60836e89349444a746f38f7f1783 {"aliquot_tag": "ALQ_e26d5252", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04162.RNA-Seq.transcriptome.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.transcriptome.gdc_realn.bam 9213107903 BAM transcriptome harmonized CPTAC3 8d0ee8e1-6681-4a29-839b-ff8a85e8bc8b d70d94747070f5887cb1cbc2cd6de6b9 {"aliquot_tag": "ALQ_c0f293d3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.WGS.N C3N-04162 LSCC WGS blood_normal CPT0222830002 CPT0222830002.WholeGenome.RP-1303.bam 56410315192 BAM submitted_aligned CPTAC3 45c41b0d-5fc2-4420-bba3-04a77a59d642 fc4dd58a035e16ddabb2315d5c0b7ce1 {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04162.WGS.N.hg38 C3N-04162 LSCC WGS blood_normal CPT0222830002 6e1ee97c-2ad3-4780-832a-95fa396a62d4_wgs_gdc_realn.bam 82677184151 BAM harmonized CPTAC3 8a7829cf-beff-4e1f-9437-863117642312 a676c9cb6d4fcde845905f09886146d1 {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04162.WGS.T C3N-04162 LSCC WGS tumor CPT0222730006 CPT0222730006.WholeGenome.RP-1303.bam 56439561530 BAM submitted_aligned CPTAC3 fc043ab2-5067-4c5e-b81b-e31bbbce335e 0c4b5d706ba31fce2ac69c46d07df3ae {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.WGS.T.hg38 C3N-04162 LSCC WGS tumor CPT0222730006 fb4d7e5b-3eb4-4172-946e-1c7969324651_wgs_gdc_realn.bam 83365877457 BAM harmonized CPTAC3 544123c3-f2e2-467a-a08a-321eee4abf75 167c870235486a62aa8c2dcdeecaee7c {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.WXS.N C3N-04162 LSCC WXS blood_normal CPT0222830002 CPT0222830002.WholeExome.RP-1303.bam 22991806024 BAM submitted_aligned CPTAC3 aa916353-23fc-40f7-854c-e8f481ac93dd e6348d0b07b911d290cc44f1eb845bf1 {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04162.WXS.N.hg38 C3N-04162 LSCC WXS blood_normal CPT0222830002 6e1ee97c-2ad3-4780-832a-95fa396a62d4_wxs_gdc_realn.bam 32765666914 BAM harmonized CPTAC3 eeacb63b-2483-49da-95e6-e431a56887bb a3fd21be4449c1c5d2e9fc698c9370bb {"aliquot_tag": "ALQ_a676f88e", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04162.WXS.T C3N-04162 LSCC WXS tumor CPT0222730006 CPT0222730006.WholeExome.RP-1303.bam 22822522121 BAM submitted_aligned CPTAC3 58e6fe64-3471-4172-bb38-fc1e223a21fd 62bb2502e3faa12fc5e915c15cd6b53f {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04162.WXS.T.hg38 C3N-04162 LSCC WXS tumor CPT0222730006 fb4d7e5b-3eb4-4172-946e-1c7969324651_wxs_gdc_realn.bam 31575892510 BAM harmonized CPTAC3 b35d2e25-9b85-4539-82b7-447dcf4d46a4 0f34bf292d1eeea8fa29936f979b334d {"aliquot_tag": "ALQ_504d8e42", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04167.MethArray.Green.T C3N-04167 LSCC Methylation_Array tumor CPT0249050006 204367490029_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e21de324-7efc-4cea-a339-1728e075b4d7 cb21366e44dcaa584fbfb884cbebf1de {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.MethArray.Red.T C3N-04167 LSCC Methylation_Array tumor CPT0249050006 204367490029_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 4f2951e2-0f1a-483f-8c7a-913ee489ad59 98c3f65db7414c7f7dcc6289b1595da6 {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.miRNA-Seq.S11_L006_R1.T C3N-04167 LSCC miRNA-Seq tumor CPT0249050009 200224_UNC31-K00269_0267_AHC722BBXY_GGCTAC_S11_L006_R1_001.unaln.bam 238350119 BAM S11_L006_R1 submitted_unaligned CPTAC3 d05a452a-7015-46a6-a29a-3bda5e4f8a46 b18fd522683602cec0ff65f5e71353f2 {"aliquot_tag": "ALQ_96df0bb6", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.miRNA-Seq.T.hg38 C3N-04167 LSCC miRNA-Seq tumor CPT0249050009 f12c1f2e-078a-43d4-b1b6-798d34beb3d5_mirnaseq_gdc_realn.bam 260298458 BAM harmonized CPTAC3 f4cd913a-0692-406f-8c71-7705e4065cc0 e77511bba62d83f5c334d7f851d678fc {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.RNA-Seq.chimeric.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.chimeric.gdc_realn.bam 68556969 BAM chimeric harmonized CPTAC3 d95ce2d6-bc36-45d4-b121-a93ebb7b9a87 94c704e31cc45107a0cf169b4176579e {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.RNA-Seq.genomic.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.genomic.gdc_realn.bam 7683098486 BAM genomic harmonized CPTAC3 9cea4674-8212-43ac-a9c6-d0687ed787b7 51150a9fdd6024a270eff7d8b4a89408 {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.RNA-Seq.S27_L007_R1.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R1_001.fastq.gz 3708412646 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 8fa96e75-2009-4b73-a20a-689d08d646dd e36c118d4314e5f896600fbdcff434aa {"aliquot_tag": "ALQ_96df0bb6", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.RNA-Seq.S27_L007_R2.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R2_001.fastq.gz 3918445251 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 b52c5dd8-978c-4368-9368-102a5cac3a4a faaf72850759eebe788f28d0467a7f7d {"aliquot_tag": "ALQ_96df0bb6", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.RNA-Seq.transcriptome.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.transcriptome.gdc_realn.bam 9697583744 BAM transcriptome harmonized CPTAC3 f14d0f04-a3e9-4f1e-89ca-154ecd4f09b2 2dffb56df6cb71442dd8fb386cb38193 {"aliquot_tag": "ALQ_96df0bb6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.WGS.N C3N-04167 LSCC WGS blood_normal CPT0249170002 CPT0249170002.WholeGenome.RP-2158.bam 24039273983 BAM submitted_aligned CPTAC3 e70f6494-f6c6-4a38-92ca-be988a887e1d 086eb339ffbe20bae163b653bf7343fe {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04167.WGS.N.hg38 C3N-04167 LSCC WGS blood_normal CPT0249170002 0675bc40-c123-4b18-a757-d78c4b35e44d_wgs_gdc_realn.bam 70803984910 BAM harmonized CPTAC3 2771a10d-8489-46ac-8cc4-3b167f93421f c1d739e0c13289d798cbdf914c5f388c {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04167.WGS.T C3N-04167 LSCC WGS tumor CPT0249050006 CPT0249050006.WholeGenome.RP-2158.bam 26382517132 BAM submitted_aligned CPTAC3 8e427eb2-b52e-4407-b5a1-5ab59953505d 032b6b8753fe22d298e5a97d0c506548 {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.WGS.T.hg38 C3N-04167 LSCC WGS tumor CPT0249050006 08585106-99a3-44b3-8df8-1d8ca02e0287_wgs_gdc_realn.bam 77140691801 BAM harmonized CPTAC3 137fb776-d437-4540-b758-a4da5a85994f 8571d0d562b32983f5b70efc4d0d0024 {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.WXS.N C3N-04167 LSCC WXS blood_normal CPT0249170002 CPT0249170002.WholeExome.RP-1303.bam 25357095563 BAM submitted_aligned CPTAC3 f68a9ec4-a53f-4c9d-87fc-5993e0776709 1379f72ffc7c62a3ba6b07fad4fc6efb {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04167.WXS.N.hg38 C3N-04167 LSCC WXS blood_normal CPT0249170002 0675bc40-c123-4b18-a757-d78c4b35e44d_wxs_gdc_realn.bam 34616296158 BAM harmonized CPTAC3 644f404d-2f8d-4ceb-8f41-152237028b33 082c058b791e9a8e9350d2a97cb94bab {"aliquot_tag": "ALQ_b09152fb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04167.WXS.T C3N-04167 LSCC WXS tumor CPT0249050006 CPT0249050006.WholeExome.RP-1303.bam 22845782341 BAM submitted_aligned CPTAC3 65e83103-eead-4b2e-8511-fc92419a484e 2715b9a8b14891dc9b2a2904b4ed63dc {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04167.WXS.T.hg38 C3N-04167 LSCC WXS tumor CPT0249050006 08585106-99a3-44b3-8df8-1d8ca02e0287_wxs_gdc_realn.bam 31412257076 BAM harmonized CPTAC3 ae9873b9-7f5e-4d2c-95c5-895a13dc00ea 4c52e9c6b78135897892207897d98ddc {"aliquot_tag": "ALQ_6601627", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04168.MethArray.Green.A C3N-04168 LUAD Methylation_Array tissue_normal CPT0255870006 203561620132_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 94e58112-8502-4f56-ba46-dbb431aecf3f 8ba451f13a1da2bdd6a1997140adeb37 {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.MethArray.Green.T C3N-04168 LUAD Methylation_Array tumor CPT0251530006 203561450068_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 82cff2f1-46c2-4008-8b1b-54b3b7b0c3db a5a9f3092f728df274d1cbb3ea9b6427 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.MethArray.Red.A C3N-04168 LUAD Methylation_Array tissue_normal CPT0255870006 203561620132_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 e9b1d7b4-53df-4f9c-9831-26fb16e97918 b602a9337206525717bf44d4a981ccc0 {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.MethArray.Red.T C3N-04168 LUAD Methylation_Array tumor CPT0251530006 203561450068_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 26e5d2b2-7eeb-4485-bd2f-f5d37f914b17 6dd313b04d2e45e0edef6bd8dbdb506c {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.miRNA-Seq.A.hg38 C3N-04168 LUAD miRNA-Seq tissue_normal CPT0255870009 98232ab3-22e9-4d5c-b623-3a4feddd6395_mirnaseq_gdc_realn.bam 153258812 BAM harmonized CPTAC3 a2226e10-9cef-44c1-ac5b-5cc09a206801 c1b4096bb4793e2f08b662f57a7d0b4e {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.miRNA-Seq.S1_L007_R1.T C3N-04168 LUAD miRNA-Seq tumor CPT0251530009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACAGTG_S1_L007_R1_001.unaln.bam 197260928 BAM S1_L007_R1 submitted_unaligned CPTAC3 aaa8871f-2fa2-4714-99d0-b178d22d76e5 c3c28fd11b9a5793197afcd8b20a767e {"aliquot_tag": "ALQ_b617215c", "sample": "S1", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.miRNA-Seq.S38_L006_R1.A C3N-04168 LUAD miRNA-Seq tissue_normal CPT0255870009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCATTC_S38_L006_R1_001.unaln.bam 135414560 BAM S38_L006_R1 submitted_unaligned CPTAC3 8509098e-513f-49db-aebf-2024af1ba9e6 63533bba4c9d8986d0eabae78d811345 {"aliquot_tag": "ALQ_b46b051", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.miRNA-Seq.T.hg38 C3N-04168 LUAD miRNA-Seq tumor CPT0251530009 a66827c8-6062-448e-9d0f-4dc6b74342c3_mirnaseq_gdc_realn.bam 212858167 BAM harmonized CPTAC3 cea39111-6713-4a77-a6d8-2b8ef719ab9a aaacf98502e331df907b03e4b737dbf9 {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.RNA-Seq.chimeric.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.chimeric.gdc_realn.bam 26962421 BAM chimeric harmonized CPTAC3 6096df10-da21-4041-943a-de273e5dd5e0 e9809d8faf56278ee8cb5c18aa296ace {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.RNA-Seq.chimeric.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.chimeric.gdc_realn.bam 32373395 BAM chimeric harmonized CPTAC3 279dd400-eb01-4517-8be6-ed2686cc531c aee21ab685160026bc7861e0cd466766 {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.RNA-Seq.genomic.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.genomic.gdc_realn.bam 14196147836 BAM genomic harmonized CPTAC3 b0bb9f70-471a-4c2e-9d81-1b4b8fa3910f ab276efcad25ba31d359e7d9882b240d {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.RNA-Seq.genomic.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.genomic.gdc_realn.bam 8060226168 BAM genomic harmonized CPTAC3 4a3881c2-1512-4d9c-b990-628a1955ccf9 b58cd8313cb597a19def9a0c92bcb168 {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.RNA-Seq.S27_L007_R1.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R1_001.fastq.gz 3597156312 FASTQ S27_L007_R1 submitted_unaligned CPTAC3 5044e0aa-a4ab-48ef-8dd6-4b1ff5ddb63d 8cc54f782145ed591bce3fca520c40b9 {"aliquot_tag": "ALQ_b617215c", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.RNA-Seq.S27_L007_R2.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R2_001.fastq.gz 4026174764 FASTQ S27_L007_R2 submitted_unaligned CPTAC3 46dafde9-7d56-4a80-afa6-4f284eedeb8f 9d16535648b7d0f19eccfe081825fadc {"aliquot_tag": "ALQ_b617215c", "sample": "S27", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.RNA-Seq.S2_L001_R1.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 3998146335 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 3bc28001-7c13-427c-9cb1-a67a8d22dcab af85fed4d1dd80f7f56d6f0598230fd2 {"aliquot_tag": "ALQ_b46b051", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.RNA-Seq.S2_L001_R2.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4639537646 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 e61e8d4d-d2ba-4554-91a9-1cbb7ea9ee19 1a03c9869586670b8c973347debbf350 {"aliquot_tag": "ALQ_b46b051", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.RNA-Seq.transcriptome.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.transcriptome.gdc_realn.bam 7948045599 BAM transcriptome harmonized CPTAC3 75ffd267-89b9-45e1-8fef-8922ba5b2518 033a21a366e35f34d581508aa4eb50b3 {"aliquot_tag": "ALQ_b46b051", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.RNA-Seq.transcriptome.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.transcriptome.gdc_realn.bam 9253029936 BAM transcriptome harmonized CPTAC3 3815b424-9ade-48c6-b1b4-ede4fbf8db1c c206a41a1f3c16b604763efe6bf7eb1b {"aliquot_tag": "ALQ_b617215c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.WGS.N C3N-04168 LUAD WGS blood_normal CPT0255960002 CPT0255960002.WholeGenome.RP-1303.bam 81801441893 BAM submitted_aligned CPTAC3 34d1eb6b-dfc6-4bfb-b4d5-aad2db8942b9 b938a26c528dd60f6c4cfb15591a938e {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04168.WGS.N.hg38 C3N-04168 LUAD WGS blood_normal CPT0255960002 0d3002e7-e715-44ac-9774-c07ee75d5d0a_wgs_gdc_realn.bam 120071170304 BAM harmonized CPTAC3 bb82aeb6-da15-4bec-9405-137957c2cc81 e56fca9c923baaeba0d942fe89dc0bad {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04168.WGS.T C3N-04168 LUAD WGS tumor CPT0251530006 CPT0251530006.WholeGenome.RP-1303.bam 66127822657 BAM submitted_aligned CPTAC3 f4cded34-8c70-4f65-b885-dacfb84c23a5 761b8972a33d3849e327659ff829a736 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.WGS.T.hg38 C3N-04168 LUAD WGS tumor CPT0251530006 3fcfbdc6-c537-4fc6-a54c-b0fdaae07128_wgs_gdc_realn.bam 98024091726 BAM harmonized CPTAC3 bb8490da-a68f-4adf-9bf4-d81488529100 1f6306e2aae3d0e88d9dde1a73c27e30 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.WXS.A C3N-04168 LUAD WXS tissue_normal CPT0255870006 CPT0255870006.WholeExome.RP-1303.bam 19749476783 BAM submitted_aligned CPTAC3 7f1a9437-bde4-4a45-9211-d495f38379d6 d90b4f371bb66c5b95ab54a0cfd6387e {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.WXS.A.hg38 C3N-04168 LUAD WXS tissue_normal CPT0255870006 91b1895f-6e7e-49b7-a6d2-768ae051591d_wxs_gdc_realn.bam 28011600755 BAM harmonized CPTAC3 c655fe7f-a330-487d-b05d-06635f271814 80829ca26adcaa071101d9c44bdaf61b {"aliquot_tag": "ALQ_9bf9adc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04168.WXS.N C3N-04168 LUAD WXS blood_normal CPT0255960002 CPT0255960002.WholeExome.RP-1303.bam 28278817844 BAM submitted_aligned CPTAC3 3a33fd2a-26fe-4238-a3ee-ef969b8a69d4 4abf698078c0016c4343d87cc26206e4 {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04168.WXS.N.hg38 C3N-04168 LUAD WXS blood_normal CPT0255960002 0d3002e7-e715-44ac-9774-c07ee75d5d0a_wxs_gdc_realn.bam 38441139529 BAM harmonized CPTAC3 c9ef3258-4a3c-4806-ba80-7b237e65fdec 1c88b1c8a5deff4a40c1789dddad70d1 {"aliquot_tag": "ALQ_6aa893cc", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04168.WXS.T C3N-04168 LUAD WXS tumor CPT0251530006 CPT0251530006.WholeExome.RP-1303.bam 22665689814 BAM submitted_aligned CPTAC3 b9a6979b-b17b-456d-afd0-43e62ec52ef5 e4198230bfd45cb2e5bc4ce4e023bd09 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04168.WXS.T.hg38 C3N-04168 LUAD WXS tumor CPT0251530006 3fcfbdc6-c537-4fc6-a54c-b0fdaae07128_wxs_gdc_realn.bam 30734548500 BAM harmonized CPTAC3 85be9462-6d7a-4e08-b339-3694a9b1144c f774947e89f7b3049fd69c55f2186ec1 {"aliquot_tag": "ALQ_26a83ccd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04169.MethArray.Green.A C3N-04169 LSCC Methylation_Array tissue_normal CPT0247300006 204372030011_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 639d94c2-1e0f-4a49-aa8a-dc374019f3a2 ecc827c24d7804413fbfda4ae22a5aec {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.MethArray.Green.T C3N-04169 LSCC Methylation_Array tumor CPT0247290006 204372030072_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 1c2a6cef-2e50-4462-acf2-d2c6614ab102 bfccecb8fafed2a8a5481cae55ce2994 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.MethArray.Red.A C3N-04169 LSCC Methylation_Array tissue_normal CPT0247300006 204372030011_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 962edc15-dbfc-4667-bcfa-e5532c97c561 2d913e0cfa5528fcc01b6d63b13c02a8 {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.MethArray.Red.T C3N-04169 LSCC Methylation_Array tumor CPT0247290006 204372030072_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 95ca4fab-9bf8-427a-8030-7f807701bd26 54b8a838a7d8129290e5d91e1d0f1559 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.miRNA-Seq.A.hg38 C3N-04169 LSCC miRNA-Seq tissue_normal CPT0247300009 e90391c1-7cf0-4a2b-a09f-06f057ee520e_mirnaseq_gdc_realn.bam 316359797 BAM harmonized CPTAC3 248b19a7-04e8-4c40-ae09-52dc35d082b6 7a1deb74b731fcf11728d84ee7c1bd47 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.miRNA-Seq.S6_L008_R1.T C3N-04169 LSCC miRNA-Seq tumor CPT0247290009 200224_UNC31-K00269_0267_AHC722BBXY_GCCAAT_S6_L008_R1_001.unaln.bam 269880160 BAM S6_L008_R1 submitted_unaligned CPTAC3 62b32a9f-b600-4aee-a5c5-36f9e3ae9505 3835ce426a47f250fe83ea79023ec7f4 {"aliquot_tag": "ALQ_4ed83ce1", "sample": "S6", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.miRNA-Seq.S8_L001_R1.A C3N-04169 LSCC miRNA-Seq tissue_normal CPT0247300009 200325_UNC31-K00269_0272_AHHC2NBBXY_CACTCA_S8_L001_R1_001.unaln.bam 285562461 BAM S8_L001_R1 submitted_unaligned CPTAC3 43b74453-a2da-49c8-a27d-e49397ddb657 70ba91723dcdb15ab64f975aff5a24b1 {"aliquot_tag": "ALQ_88948d35", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.miRNA-Seq.T.hg38 C3N-04169 LSCC miRNA-Seq tumor CPT0247290009 f4fd6ccc-2285-40e9-b747-89fb171fd276_mirnaseq_gdc_realn.bam 304470695 BAM harmonized CPTAC3 03c02385-3090-405c-a365-71122d03a7f0 bc6c738c29d339d476d078169dbb56a5 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.RNA-Seq.chimeric.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.chimeric.gdc_realn.bam 122244915 BAM chimeric harmonized CPTAC3 bca20687-b0a6-456e-9214-498ca9b548e4 df585c23c6b3eeeee9002eb29c208c52 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.RNA-Seq.chimeric.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.chimeric.gdc_realn.bam 31540082 BAM chimeric harmonized CPTAC3 5b8624ff-3786-4570-ba9e-364509cd7f85 fc6ad8788b7046df91d82d8760b92867 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.RNA-Seq.genomic.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.genomic.gdc_realn.bam 8645510934 BAM genomic harmonized CPTAC3 ec3dcde0-f159-4484-9c63-022b40cc8282 ec7787541aa83aad058718a8c5913113 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.RNA-Seq.genomic.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.genomic.gdc_realn.bam 7375827388 BAM genomic harmonized CPTAC3 e510a21f-b2c4-476f-9e64-b3db08beff9b deddd65e4c48fae4d93bb4fba7593240 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.RNA-Seq.S16_L004_R1.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R1_001.fastq.gz 4472375634 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 f863296d-78d7-438d-8bb2-300c515dda44 271cf5fe0aab959a36831d604620ba3c {"aliquot_tag": "ALQ_88948d35", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.RNA-Seq.S16_L004_R2.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R2_001.fastq.gz 4663229052 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 b12930f4-cac7-4a0d-a0b8-5e76154adf3f 7bbe8b68b272eac50aca5caa701d9055 {"aliquot_tag": "ALQ_88948d35", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.RNA-Seq.S6_L002_R1.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R1_001.fastq.gz 3690580584 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 97479f3b-6532-460a-a0ab-10b872618b99 56f7a0572544ba1d5ebeb5a3485df335 {"aliquot_tag": "ALQ_4ed83ce1", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.RNA-Seq.S6_L002_R2.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R2_001.fastq.gz 3928710079 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 0dd2c9f0-e996-43d9-bf63-520d9935099d 36cbaf7a3223820833f4e166f3c04c6f {"aliquot_tag": "ALQ_4ed83ce1", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.RNA-Seq.transcriptome.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.transcriptome.gdc_realn.bam 11040351546 BAM transcriptome harmonized CPTAC3 f67143b3-f9cf-4f26-a64e-292d83efa32f 8d1c4beae589137346c1818b9da22c82 {"aliquot_tag": "ALQ_88948d35", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.RNA-Seq.transcriptome.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.transcriptome.gdc_realn.bam 11046710189 BAM transcriptome harmonized CPTAC3 d5a33594-91b5-4722-b655-217c08a43545 0cc14a8804b4890e96247b5503ba79a4 {"aliquot_tag": "ALQ_4ed83ce1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.WGS.N C3N-04169 LSCC WGS blood_normal CPT0247330002 CPT0247330002.WholeGenome.RP-2158.bam 24715128796 BAM submitted_aligned CPTAC3 7667bb36-7936-45d5-a1c7-7e8ec9e84a15 ad2e7db42e775726e0d41a322e9e2c88 {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04169.WGS.N.hg38 C3N-04169 LSCC WGS blood_normal CPT0247330002 54e2e9f0-9524-4e55-9d51-57a4fb7cce60_wgs_gdc_realn.bam 73463581136 BAM harmonized CPTAC3 d3718f3b-2fda-4bdc-a5ad-37575d052825 44aa69a30fe82723b48e2778fb8312ba {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04169.WGS.T C3N-04169 LSCC WGS tumor CPT0247290006 CPT0247290006.WholeGenome.RP-2158.bam 22090184946 BAM submitted_aligned CPTAC3 2eaa7890-61af-4285-9981-816aa9a78e64 264043421f9de8bbea648404bcb7fdbe {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.WGS.T.hg38 C3N-04169 LSCC WGS tumor CPT0247290006 a23139fb-5134-4078-b6dc-1bda1c7f8bd9_wgs_gdc_realn.bam 63075312406 BAM harmonized CPTAC3 0804e70b-bb9b-43d8-ab44-1205ebbde973 901ad506e63961e00620627573beec0a {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.WXS.A C3N-04169 LSCC WXS tissue_normal CPT0247300006 CPT0247300006.WholeExome.RP-1303.bam 26976082013 BAM submitted_aligned CPTAC3 e99c9ddf-805a-4b50-b9dc-6819e8e9a8fd 64fb3fc2a3cf8c3263a7d758df167fd9 {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.WXS.A.hg38 C3N-04169 LSCC WXS tissue_normal CPT0247300006 87322779-d155-4258-a548-0440eda818e4_wxs_gdc_realn.bam 36448575089 BAM harmonized CPTAC3 38bce5b8-716c-4c09-8109-40211a17a0e8 bc601b3fea6fc34f7d01e5eb4462dd87 {"aliquot_tag": "ALQ_182b90a4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04169.WXS.N C3N-04169 LSCC WXS blood_normal CPT0247330002 CPT0247330002.WholeExome.RP-1303.bam 21686577140 BAM submitted_aligned CPTAC3 4f88eda3-9908-46c7-a77b-5472710d9c17 d905d4a4f17fa91ef0aac8194c33bf29 {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04169.WXS.N.hg38 C3N-04169 LSCC WXS blood_normal CPT0247330002 54e2e9f0-9524-4e55-9d51-57a4fb7cce60_wxs_gdc_realn.bam 30051189120 BAM harmonized CPTAC3 bbf10540-bcde-48f7-8473-03faa4f7da36 b81787885197447e15bf513ecde84bc4 {"aliquot_tag": "ALQ_58e62e6d", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04169.WXS.T C3N-04169 LSCC WXS tumor CPT0247290006 CPT0247290006.WholeExome.RP-1303.bam 36600511424 BAM submitted_aligned CPTAC3 2a3be69f-f8bf-46aa-86b0-f786b68d48c7 509fa7959b2a728c95519474535a6c92 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04169.WXS.T.hg38 C3N-04169 LSCC WXS tumor CPT0247290006 a23139fb-5134-4078-b6dc-1bda1c7f8bd9_wxs_gdc_realn.bam 51216657352 BAM harmonized CPTAC3 44b06874-20e8-4823-aef9-2636b40250f9 6bc7898e436e30d9bc72761bfc629125 {"aliquot_tag": "ALQ_de672170", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04173.MethArray.Green.A C3N-04173 LUAD Methylation_Array tissue_normal CPT0246090006 203561620132_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 92630ab6-eb8f-40bf-b81c-cff5aafd92f4 974a082653501d57a31fa5140c75d82c {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.MethArray.Green.T C3N-04173 LUAD Methylation_Array tumor CPT0246080006 203561620053_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 030aace5-4fac-48ea-9279-6e0d08e8ac19 9c00b6d1f43b4607fc2e0ea1e0358339 {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.MethArray.Red.A C3N-04173 LUAD Methylation_Array tissue_normal CPT0246090006 203561620132_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 499cc254-3b17-45db-80d9-f7b35ed420ab d24a63606a41a198bb42060a52b963b5 {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.MethArray.Red.T C3N-04173 LUAD Methylation_Array tumor CPT0246080006 203561620053_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 e2a9a039-e479-4fd3-acd9-d591022fccd3 e964053a13d6560908262da9eb16cf3e {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.miRNA-Seq.A.hg38 C3N-04173 LUAD miRNA-Seq tissue_normal CPT0246090009 24c7d702-a27f-4c1e-8f92-7ecde2495b41_mirnaseq_gdc_realn.bam 309336299 BAM harmonized CPTAC3 47fe5afe-5781-4733-babb-dd4c8883166f 14ed4f63b6e02e38ff225177f6b61e29 {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.miRNA-Seq.S143_L007_R1.A C3N-04173 LUAD miRNA-Seq tissue_normal CPT0246090009 190828_UNC32-K00270_0200_BH7GVJBBXY_GTTTCG_S143_L007_R1_001.unaln.bam 277996274 BAM S143_L007_R1 submitted_unaligned CPTAC3 05109bb7-575b-4e76-a342-5bd3b9016af4 1fe9c2d24f3d3c89c748ddf143d4c2f2 {"aliquot_tag": "ALQ_a567965e", "sample": "S143", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.miRNA-Seq.S48_L004_R1.T C3N-04173 LUAD miRNA-Seq tumor CPT0246080009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCCCGA_S48_L004_R1_001.unaln.bam 203996060 BAM S48_L004_R1 submitted_unaligned CPTAC3 fb2df4c3-43c2-4ee7-9817-ff2eec7697c8 15c81888efbe221bc00cbd1e73c5afb5 {"aliquot_tag": "ALQ_9807bfee", "sample": "S48", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.miRNA-Seq.T.hg38 C3N-04173 LUAD miRNA-Seq tumor CPT0246080009 d418909a-5fac-464e-a6cd-a5a36a407fc5_mirnaseq_gdc_realn.bam 224627793 BAM harmonized CPTAC3 8a06e741-83b6-45c6-828b-3d23cd764674 3ddfc571720aeb933debe37d4f5ced3d {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.RNA-Seq.chimeric.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.chimeric.gdc_realn.bam 41931808 BAM chimeric harmonized CPTAC3 c52f739a-5783-48f7-9666-ec1044a5dc0f 96ad60cc64bc2ddebf9bdef3a748bfbb {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.RNA-Seq.chimeric.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.chimeric.gdc_realn.bam 18943551 BAM chimeric harmonized CPTAC3 7ef79980-0143-4894-a099-a4528f60491a 955a686bb5678cef833c3c4675918d56 {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.RNA-Seq.genomic.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.genomic.gdc_realn.bam 10000547612 BAM genomic harmonized CPTAC3 a01db665-d90b-449d-94e3-1feaf0a834ca 85109c19e82605e1f1392b35bd6cee5b {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.RNA-Seq.genomic.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.genomic.gdc_realn.bam 11488546265 BAM genomic harmonized CPTAC3 4440b71e-5ec6-4c4e-aa6a-13304fff7ae1 65ad2f5259ca342110242c114365d46f {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.RNA-Seq.S12_L003_R1.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R1_001.fastq.gz 3120659218 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 1d86a491-47f9-4d87-96a6-7b455f441fa5 c6a5ebe729c338edb170d8b8c541c715 {"aliquot_tag": "ALQ_9807bfee", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.RNA-Seq.S12_L003_R2.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R2_001.fastq.gz 3527276567 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 4c01e88d-7212-4c8b-8724-4cc97209c184 becbb54929424ee36e3e34caafcd98ba {"aliquot_tag": "ALQ_9807bfee", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.RNA-Seq.S2_L001_R1.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R1_001.fastq.gz 3749168083 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 f644207c-d22d-4d40-863f-5c827de3a073 7dacf279e4bf9be314ba09533b82dbea {"aliquot_tag": "ALQ_a567965e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.RNA-Seq.S2_L001_R2.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R2_001.fastq.gz 4467000810 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 8ad61b6a-e091-4134-b3d0-ab5843c5bd04 a3877923bdf446cda12526773f13878e {"aliquot_tag": "ALQ_a567965e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.RNA-Seq.transcriptome.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.transcriptome.gdc_realn.bam 9196387903 BAM transcriptome harmonized CPTAC3 6a7adb32-b4ef-4969-b6f7-a9b225576e4c 5037106d3f708dd5121da81a10e0a292 {"aliquot_tag": "ALQ_a567965e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.RNA-Seq.transcriptome.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.transcriptome.gdc_realn.bam 8348042887 BAM transcriptome harmonized CPTAC3 925f55c3-00d1-429a-a41f-129b68f80f3c a71b9161e6d20100c55afdf882605ff3 {"aliquot_tag": "ALQ_9807bfee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.WGS.N C3N-04173 LUAD WGS blood_normal CPT0246120002 CPT0246120002.WholeGenome.RP-1303.bam 75179611230 BAM submitted_aligned CPTAC3 c856049e-22e9-48f1-a62c-3ea21743b1b1 40aeb5b4e1600cf18289163d6e59ccbc {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04173.WGS.N.hg38 C3N-04173 LUAD WGS blood_normal CPT0246120002 298cc0c8-3f3f-4aa4-8e65-1ea7069ce7e9_wgs_gdc_realn.bam 110496917927 BAM harmonized CPTAC3 3ad93279-c460-4e39-8791-0e83339a9121 55283e8bab647b51af71ddd4b7832cdd {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04173.WGS.T C3N-04173 LUAD WGS tumor CPT0246080006 CPT0246080006.WholeGenome.RP-1303.bam 75419405100 BAM submitted_aligned CPTAC3 50ca4688-b5f5-420f-9e1d-233a43522022 327a90fc13c9000a7f950a5f22b87ce3 {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.WGS.T.hg38 C3N-04173 LUAD WGS tumor CPT0246080006 69ebc122-a499-4542-be3d-a8dda6e7f08a_wgs_gdc_realn.bam 109887095318 BAM harmonized CPTAC3 5b0d16d0-934f-45f3-8d11-1b8f4ac1e6bb 3592884a5f60da3050fdf50d7ab8f11c {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.WXS.A C3N-04173 LUAD WXS tissue_normal CPT0246090006 CPT0246090006.WholeExome.RP-1303.bam 23493662925 BAM submitted_aligned CPTAC3 f7e5941b-6205-4913-8c37-1a891aa0dcac c1cc81c33eec97c308166cf0fb464532 {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.WXS.A.hg38 C3N-04173 LUAD WXS tissue_normal CPT0246090006 6daf3540-271c-4875-a8d4-8900fe14a212_wxs_gdc_realn.bam 33381433024 BAM harmonized CPTAC3 2984add8-a6fe-45ef-8210-d23d76b0ffd7 5bacaf159eb3b839369fa0ed85be7038 {"aliquot_tag": "ALQ_35d88bcf", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04173.WXS.N C3N-04173 LUAD WXS blood_normal CPT0246120002 CPT0246120002.WholeExome.RP-1303.bam 29616006913 BAM submitted_aligned CPTAC3 b1cc7d71-851f-4418-a051-04500b0cd157 24e59d6aa10dc124897925bd23b6be48 {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04173.WXS.N.hg38 C3N-04173 LUAD WXS blood_normal CPT0246120002 298cc0c8-3f3f-4aa4-8e65-1ea7069ce7e9_wxs_gdc_realn.bam 40471992034 BAM harmonized CPTAC3 8101f62f-fc6a-46f7-9827-579557d45213 e0662776cbac242602a90253db855198 {"aliquot_tag": "ALQ_8e39ad62", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04173.WXS.T C3N-04173 LUAD WXS tumor CPT0246080006 CPT0246080006.WholeExome.RP-1303.bam 26268051835 BAM submitted_aligned CPTAC3 0bce8be0-24cf-4e33-84a2-03d1072e41c1 4fd38c6f33ffb4879309954d6f547c9c {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04173.WXS.T.hg38 C3N-04173 LUAD WXS tumor CPT0246080006 69ebc122-a499-4542-be3d-a8dda6e7f08a_wxs_gdc_realn.bam 35970097878 BAM harmonized CPTAC3 bd28b0c5-6029-455d-8c69-f9a8247bd648 e5b17eb9edb2f72c2eeb5d0b4b766f87 {"aliquot_tag": "ALQ_8b8a27f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.MethArray.Green.T C3N-04176 LUAD Methylation_Array tumor CPT0247390006 203561620052_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 b8ef0274-83c9-4ca2-983f-fce5a0a03df1 87aa590221f6d639e4b9bbda4f058a82 {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.MethArray.Red.T C3N-04176 LUAD Methylation_Array tumor CPT0247390006 203561620052_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 4db4c606-fac3-4f3f-8d56-441454b36f38 261f61db6a72150000170583b735b7fa {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.miRNA-Seq.A.hg38 C3N-04176 LUAD miRNA-Seq tissue_normal CPT0247400006 c9a7d572-6de8-4cca-875e-74a7340ddf74_mirnaseq_gdc_realn.bam 218949382 BAM harmonized CPTAC3 308f5c5c-da3d-48cf-a5b7-3052c0fbada2 5021a17ae16fa598d24a708d1d960b3a {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04176.miRNA-Seq.S36_L004_R1.T C3N-04176 LUAD miRNA-Seq tumor CPT0247390009 190722_UNC31-K00269_0234_AH7VGTBBXY_TACAGC_S36_L004_R1_001.unaln.bam 205775996 BAM S36_L004_R1 submitted_unaligned CPTAC3 f40bc171-02e5-4c82-8f10-22a8068866c3 acc0e70e408ca0ecc60426fc0926c8da {"aliquot_tag": "ALQ_8584ef44", "sample": "S36", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.miRNA-Seq.S4_L005_R1.A C3N-04176 LUAD miRNA-Seq tissue_normal CPT0247400006 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTTGA_S4_L005_R1_001.unaln.bam 191094801 BAM S4_L005_R1 submitted_unaligned CPTAC3 753157e4-da34-4cb6-9f60-b294c42d9d23 315d7d1bf0d91f3db54cf523e304993d {"aliquot_tag": "ALQ_52ea01c", "sample": "S4", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04176.miRNA-Seq.T.hg38 C3N-04176 LUAD miRNA-Seq tumor CPT0247390009 a922aa7c-f74b-4f49-a01c-cb7415264a2c_mirnaseq_gdc_realn.bam 227355761 BAM harmonized CPTAC3 3a3a0188-3691-4a35-aae9-9a04fc45549a 52e394cac6dc09020b6c2bb5f4e79a9b {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.RNA-Seq.chimeric.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.chimeric.gdc_realn.bam 39019042 BAM chimeric harmonized CPTAC3 4d91648e-0031-46ee-88c5-2ece72f9fbdf 76ab2a0757697dd4dd6028377b0036f3 {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04176.RNA-Seq.chimeric.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.chimeric.gdc_realn.bam 30826164 BAM chimeric harmonized CPTAC3 3c7f3d14-70e7-457e-8e1e-1da2c0f85894 a33ef0e721d86efd2d6312c34aea526f {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.RNA-Seq.genomic.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.genomic.gdc_realn.bam 17164577058 BAM genomic harmonized CPTAC3 0f3cb140-19c5-4591-b35f-c67aaf833944 c2f9c2556d46a89e56daf97d2c0d5e87 {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04176.RNA-Seq.genomic.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.genomic.gdc_realn.bam 13943763689 BAM genomic harmonized CPTAC3 296355d6-3ef8-412f-8954-a04e74ea33d9 a61fe86c06ae7584314ee1c5a491b528 {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.RNA-Seq.S13_L004_R1.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R1_001.fastq.gz 4430014065 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 e6ff39a8-6d38-4ec9-a9e5-ff056ddc4fd2 62c92689c1545f444073cf9dfc969825 {"aliquot_tag": "ALQ_8584ef44", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.RNA-Seq.S13_L004_R2.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R2_001.fastq.gz 4975836044 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 2d860b31-bf4a-4281-8d83-caa955b6c03b 187867ff8dae06feba67eb0889dd562e {"aliquot_tag": "ALQ_8584ef44", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.RNA-Seq.S20_L005_R1.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R1_001.fastq.gz 5543734528 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 9009eb6a-1e4e-4655-a421-422064664c48 f3f029ed271f4be4755403316b688ecd {"aliquot_tag": "ALQ_52ea01c", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04176.RNA-Seq.S20_L005_R2.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R2_001.fastq.gz 6230360073 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 f8232df5-1cb0-44a3-972b-3466d16438f4 e1d3a74b3cba26e19979c9a176c77e08 {"aliquot_tag": "ALQ_52ea01c", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04176.RNA-Seq.transcriptome.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.transcriptome.gdc_realn.bam 12373181591 BAM transcriptome harmonized CPTAC3 80ca4e7a-e74f-4db0-a534-14d431537aa9 6f36128d5654a39a988635f6de47f31f {"aliquot_tag": "ALQ_52ea01c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04176.RNA-Seq.transcriptome.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.transcriptome.gdc_realn.bam 10554142558 BAM transcriptome harmonized CPTAC3 1565f04a-d6ad-41e7-bf03-760a8413dbaa e8e40273de6df663083dab7b3fc97313 {"aliquot_tag": "ALQ_8584ef44", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.WGS.N C3N-04176 LUAD WGS blood_normal CPT0247790002 CPT0247790002.WholeGenome.RP-1303.bam 70914497366 BAM submitted_aligned CPTAC3 c7311b42-94d5-45d4-91dc-ff272aa9a897 4c50213e9af7087e1c0331685a853bf6 {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04176.WGS.N.hg38 C3N-04176 LUAD WGS blood_normal CPT0247790002 960a6dc6-8f50-404f-ace3-e26c2c0218d1_wgs_gdc_realn.bam 105503865522 BAM harmonized CPTAC3 8738f461-b775-4a75-a555-003c1e83b643 8c83007762a9af9afb065a4764b8b71a {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04176.WGS.T C3N-04176 LUAD WGS tumor CPT0247390006 CPT0247390006.WholeGenome.RP-1303.bam 63557063063 BAM submitted_aligned CPTAC3 f1d13016-f7d1-4e45-a9d0-227b5586d52d 8091b2b6fa056990e99a03517650e985 {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.WGS.T.hg38 C3N-04176 LUAD WGS tumor CPT0247390006 eeb0c2ad-fe3d-4fb2-8eb6-431b21d3824d_wgs_gdc_realn.bam 92977768486 BAM harmonized CPTAC3 7b2957aa-065e-4816-9fe8-f74d014636d3 4f637f2efd272fdd689295ce017f54ec {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.WXS.N C3N-04176 LUAD WXS blood_normal CPT0247790002 CPT0247790002.WholeExome.RP-1303.bam 27503868261 BAM submitted_aligned CPTAC3 20d4f34b-7ac0-4900-af49-03d3c9ed7e5c 3fb41e41b2881726dbb7de54d9152ad9 {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04176.WXS.N.hg38 C3N-04176 LUAD WXS blood_normal CPT0247790002 960a6dc6-8f50-404f-ace3-e26c2c0218d1_wxs_gdc_realn.bam 37344100140 BAM harmonized CPTAC3 ed33f478-7371-444c-8674-90638c03d813 c557c0d8042a4c348409b34649c34ce3 {"aliquot_tag": "ALQ_89c774da", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04176.WXS.T C3N-04176 LUAD WXS tumor CPT0247390006 CPT0247390006.WholeExome.RP-1303.bam 24470262428 BAM submitted_aligned CPTAC3 d82908b1-19f2-463d-ab40-68334747f978 f9c6ad0e81b52d151a71768b93439d2b {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04176.WXS.T.hg38 C3N-04176 LUAD WXS tumor CPT0247390006 eeb0c2ad-fe3d-4fb2-8eb6-431b21d3824d_wxs_gdc_realn.bam 33718052779 BAM harmonized CPTAC3 06b89cd8-6a2c-4221-98df-49989219d8eb 06715897ed058051b1a2a15005ed7f38 {"aliquot_tag": "ALQ_153bf2d5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.MethArray.Green.A C3N-04180 LUAD Methylation_Array tissue_normal CPT0247810006 203561450020_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1e5a395d-b36e-443d-bdeb-5134a9da2791 50848e25cbed7c13846f3e7f8d0a6278 {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.MethArray.Green.T C3N-04180 LUAD Methylation_Array tumor CPT0247800006 203561620162_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6f194238-8d8c-4815-8baf-b6d8e45dd7fd 5ac34dafc4a61cbec62bba14e1481117 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.MethArray.Red.A C3N-04180 LUAD Methylation_Array tissue_normal CPT0247810006 203561450020_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 71e17443-9099-4f61-9f32-e5d9ebaac077 b1c45bb0b25e5e75b3be3174b1e445f6 {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.MethArray.Red.T C3N-04180 LUAD Methylation_Array tumor CPT0247800006 203561620162_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 b252da56-4957-4eaf-bdfa-2b99f23502c5 74b660293d36f0c09a19b4f3a565e796 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.miRNA-Seq.A.hg38 C3N-04180 LUAD miRNA-Seq tissue_normal CPT0247810009 bf41ea70-1640-4704-9415-6231dc23bf25_mirnaseq_gdc_realn.bam 300303067 BAM harmonized CPTAC3 754bab63-e922-489b-bf84-f474f7e88bb3 be0bf227ab5a9f002e3eedba12922c24 {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.miRNA-Seq.S37_L004_R1.T C3N-04180 LUAD miRNA-Seq tumor CPT0247800009 190722_UNC31-K00269_0234_AH7VGTBBXY_TATAAT_S37_L004_R1_001.unaln.bam 197664837 BAM S37_L004_R1 submitted_unaligned CPTAC3 8a7b9926-84f8-4842-9764-d0f4b95b3756 505ee37ec798d31e161ee4c659d06036 {"aliquot_tag": "ALQ_e2537df6", "sample": "S37", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.miRNA-Seq.S42_L007_R1.A C3N-04180 LUAD miRNA-Seq tissue_normal CPT0247810009 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGAAA_S42_L007_R1_001.unaln.bam 262139153 BAM S42_L007_R1 submitted_unaligned CPTAC3 630e7c2a-4ead-466c-aa6d-6127d7dbc092 dee0155f978b6ec9202f2275df8937d1 {"aliquot_tag": "ALQ_df335446", "sample": "S42", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.miRNA-Seq.T.hg38 C3N-04180 LUAD miRNA-Seq tumor CPT0247800009 966e5511-bfd2-47ba-8639-298f759905f2_mirnaseq_gdc_realn.bam 219837464 BAM harmonized CPTAC3 3f9e3821-7a68-46e3-9a1b-46f178d96697 bc2a413ff7a8c26e59d384cffd591ddc {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.RNA-Seq.chimeric.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.chimeric.gdc_realn.bam 34723369 BAM chimeric harmonized CPTAC3 93c1ecc2-3afc-43c1-a125-4289e894e858 9d7aada4f823a0ba8e0cfc881ad87aad {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.RNA-Seq.chimeric.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.chimeric.gdc_realn.bam 27066093 BAM chimeric harmonized CPTAC3 add3c2c4-cb1a-4b6a-b158-12070a90e86a 74973575786328a868b09a980496b69c {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.RNA-Seq.genomic.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.genomic.gdc_realn.bam 8358142306 BAM genomic harmonized CPTAC3 b74c1fb8-caa7-4699-8e8a-f75ccf4751f4 f90ccc6bde9bc7dc12e3a1662ffb11ce {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.RNA-Seq.genomic.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.genomic.gdc_realn.bam 12127235623 BAM genomic harmonized CPTAC3 fde35541-b3cb-4e9c-bbdc-a289ee0500f3 6e23351b46f52e1d89992653c1b92a19 {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.RNA-Seq.S16_L004_R1.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R1_001.fastq.gz 3688431524 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 079aa97e-3ca0-4252-a5c2-dc08802378f6 b6629f6bdd3c5d57dc0e711494dc06e9 {"aliquot_tag": "ALQ_e2537df6", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.RNA-Seq.S16_L004_R2.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R2_001.fastq.gz 4310951410 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 cb9c2592-b706-4c4f-a395-3c5eefbab73a 26e1e9ed8ad95e1c47c9468f746c9b4a {"aliquot_tag": "ALQ_e2537df6", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.RNA-Seq.S7_L002_R1.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R1_001.fastq.gz 3210841174 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 c76d540f-e83e-4512-bbb3-88a52442ee0e f8187ac834865b29a4283c30c6fe67f5 {"aliquot_tag": "ALQ_df335446", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.RNA-Seq.S7_L002_R2.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R2_001.fastq.gz 3689260719 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 f8858c65-c35d-420a-a449-4354faa801a5 c99eca9275182382b679e8dd55973fb0 {"aliquot_tag": "ALQ_df335446", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.RNA-Seq.transcriptome.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.transcriptome.gdc_realn.bam 7719051864 BAM transcriptome harmonized CPTAC3 fa113753-ba3c-4ee6-bda4-b136732a6a74 fdd0eb71fc5f9972ccce1bd28206bce0 {"aliquot_tag": "ALQ_df335446", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.RNA-Seq.transcriptome.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.transcriptome.gdc_realn.bam 10656251697 BAM transcriptome harmonized CPTAC3 428c8369-3f90-4bf3-b7a7-9e49e6a62130 7a15171a975af2c8e7314f47ac469f98 {"aliquot_tag": "ALQ_e2537df6", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.WGS.N C3N-04180 LUAD WGS blood_normal CPT0247840002 CPT0247840002.WholeGenome.RP-1303.bam 72897946606 BAM submitted_aligned CPTAC3 7da2864d-4f96-47c7-939a-25b582df183f bc70c909f87457c4c6aceb0fdfd4a8d3 {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04180.WGS.N.hg38 C3N-04180 LUAD WGS blood_normal CPT0247840002 c1986a60-76f3-47a3-959e-a5e616741443_wgs_gdc_realn.bam 105901682399 BAM harmonized CPTAC3 02584fea-efe1-4648-8e01-7f337a32c2d6 e9ededfb019fc399cacaf871fb6c563d {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04180.WGS.T C3N-04180 LUAD WGS tumor CPT0247800006 CPT0247800006.WholeGenome.RP-1303.bam 58623111455 BAM submitted_aligned CPTAC3 46dca979-c9d5-41cf-be09-d7a748a53735 9c1f056b10b098f200aa8d108ce70f59 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.WGS.T.hg38 C3N-04180 LUAD WGS tumor CPT0247800006 6dfb784a-7d1c-40af-8cb2-19c005b7274e_wgs_gdc_realn.bam 84928089015 BAM harmonized CPTAC3 7b05050d-3b38-4aee-9065-eb355491b6ca fa97c602a9e52ca7a167b0918dbfbb2b {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.WXS.A C3N-04180 LUAD WXS tissue_normal CPT0247810006 CPT0247810006.WholeExome.RP-1303.bam 25621934114 BAM submitted_aligned CPTAC3 a99f79c1-a0a3-48fe-b58a-a3a0ed4c501e 0dff3c320a831609eaae8fb9a65747f3 {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.WXS.A.hg38 C3N-04180 LUAD WXS tissue_normal CPT0247810006 0db3fedf-3ff3-42ca-970d-36fb9942490d_wxs_gdc_realn.bam 35987940235 BAM harmonized CPTAC3 b4e16a0c-46f5-4d87-8551-363cf3f9f55a 91e85e8e00db451bfcb15029149a4e0b {"aliquot_tag": "ALQ_4f8c49d7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04180.WXS.N C3N-04180 LUAD WXS blood_normal CPT0247840002 CPT0247840002.WholeExome.RP-1303.bam 27191859557 BAM submitted_aligned CPTAC3 fe0b7607-cfbb-40f1-9bdb-3d5017d26bbc 68fc2b1b8f49de7321d6f1bda09df52c {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04180.WXS.N.hg38 C3N-04180 LUAD WXS blood_normal CPT0247840002 c1986a60-76f3-47a3-959e-a5e616741443_wxs_gdc_realn.bam 37504073014 BAM harmonized CPTAC3 f4033489-bfd0-4e49-bc9f-7adb5a397614 e480b210d782aa4378ba9ce23d80d09a {"aliquot_tag": "ALQ_800102be", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04180.WXS.T C3N-04180 LUAD WXS tumor CPT0247800006 CPT0247800006.WholeExome.RP-1303.bam 24828863994 BAM submitted_aligned CPTAC3 3399fc25-1c72-4283-884b-80c9e5edbb9d ece98d30e445a525926e56c5b9168cbb {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04180.WXS.T.hg38 C3N-04180 LUAD WXS tumor CPT0247800006 6dfb784a-7d1c-40af-8cb2-19c005b7274e_wxs_gdc_realn.bam 34633764426 BAM harmonized CPTAC3 db6c0e60-b997-4ebe-b250-7430a61dc275 4f1db11ee2f2c249f9643114ef4ca707 {"aliquot_tag": "ALQ_72ec6067", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.MethArray.Green.T C3N-04273 HNSCC Methylation_Array tumor CPT0245230010 203271740156_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 0af0ce79-7155-47d5-9a5d-53f0a728fb37 a5c9ae770a262e02d45b72d4e942a7c2 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.MethArray.Red.T C3N-04273 HNSCC Methylation_Array tumor CPT0245230010 203271740156_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 b06d8772-5432-4f4f-a65a-adc799b00783 4f6ad7b3afe7d3e030990d561ffffe95 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.miRNA-Seq.S22_L006_R1.T C3N-04273 HNSCC miRNA-Seq tumor CPT0245230007 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L006_R1_001.unaln.bam 217298749 BAM S22_L006_R1 submitted_unaligned CPTAC3 4ca9688f-dac7-41a7-9aa7-1479008e1668 41ea18c5647e675bb1720441003e42c4 {"aliquot_tag": "ALQ_744f186e", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.miRNA-Seq.T.hg38 C3N-04273 HNSCC miRNA-Seq tumor CPT0245230007 ffc63a82-f0bb-4ea4-87ed-078abb7f673c_mirnaseq_gdc_realn.bam 247110656 BAM harmonized CPTAC3 ecdc0c13-801c-4dec-a9db-06373376f611 578791f2194c0179dcce90b0a73c8752 {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.RNA-Seq.chimeric.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.chimeric.gdc_realn.bam 35816179 BAM chimeric harmonized CPTAC3 80dcf74b-4e0b-4e80-80f5-90439e6067cd 6755b454dc92180fa40f1e6cb83e5f82 {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.RNA-Seq.genomic.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.genomic.gdc_realn.bam 7672545062 BAM genomic harmonized CPTAC3 966e623a-880d-4cf3-a8a1-822e9f70b051 7eca67d272a74c67906e10694267a9bd {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.RNA-Seq.S35_L008_R1.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R1_001.fastq.gz 3540715562 FASTQ S35_L008_R1 submitted_unaligned CPTAC3 efe2a881-2ece-4dad-8c4a-593a18039330 dd3008e2862adde61773c19baff1c5e5 {"aliquot_tag": "ALQ_744f186e", "sample": "S35", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.RNA-Seq.S35_L008_R2.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R2_001.fastq.gz 4041339544 FASTQ S35_L008_R2 submitted_unaligned CPTAC3 7894fce1-8f49-40bd-a1be-8245cd4eea40 d01c5d9a788825e284111a5786a4220a {"aliquot_tag": "ALQ_744f186e", "sample": "S35", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.RNA-Seq.transcriptome.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.transcriptome.gdc_realn.bam 8649353055 BAM transcriptome harmonized CPTAC3 b3c0cd57-58c0-4fe6-a422-9c2e6773e0e2 3232c80a1df56c2ccd6bdf4fe892113e {"aliquot_tag": "ALQ_744f186e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.WGS.N C3N-04273 HNSCC WGS blood_normal CPT0245290002 CPT0245290002.WholeGenome.RP-1303.bam 78492721832 BAM submitted_aligned CPTAC3 28b5661b-a20f-4897-beb4-68bc631be9a8 b42f739ee7f2c282279fb6b5f8546d51 {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04273.WGS.N.hg38 C3N-04273 HNSCC WGS blood_normal CPT0245290002 431aadcb-c498-4e4a-8684-1e78ad4edfc8_wgs_gdc_realn.bam 112427816978 BAM harmonized CPTAC3 b5d8733d-85e6-41cf-8bcb-45b0cc18b693 1c0707b57031e7584f0f8c000c24ab67 {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04273.WGS.T C3N-04273 HNSCC WGS tumor CPT0245230010 CPT0245230010.WholeGenome.RP-1303.bam 64442247798 BAM submitted_aligned CPTAC3 b2f84179-526f-4e6a-9110-7b6dba66bb40 862a28fab860b22c613b918a62fa5ac2 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.WGS.T.hg38 C3N-04273 HNSCC WGS tumor CPT0245230010 baebe3ef-dedd-4185-8107-9105500fa99b_wgs_gdc_realn.bam 92834993929 BAM harmonized CPTAC3 f685fabc-3497-4689-8ddf-10dce16ce9e9 b3b4ed817a0c7e8166dc54bc16450057 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.WXS.N C3N-04273 HNSCC WXS blood_normal CPT0245290002 CPT0245290002.WholeExome.RP-1303.bam 45005222461 BAM submitted_aligned CPTAC3 53b3d4d8-d66a-42f5-a16b-f24b4ce53125 49b5cf03411f489293d6b6c7368a3315 {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04273.WXS.N.hg38 C3N-04273 HNSCC WXS blood_normal CPT0245290002 431aadcb-c498-4e4a-8684-1e78ad4edfc8_wxs_gdc_realn.bam 61797189667 BAM harmonized CPTAC3 b805f18c-cd4b-45e7-8906-ff4b6892101b 98de45820581165a5b2cf297ac192dbb {"aliquot_tag": "ALQ_4e95f440", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04273.WXS.T C3N-04273 HNSCC WXS tumor CPT0245230010 CPT0245230010.WholeExome.RP-1303.bam 17700660406 BAM submitted_aligned CPTAC3 8b8fb884-c4b4-4b0e-b244-fd89014c4229 3a3b09454ed87e3ecab25a50e8f961f2 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04273.WXS.T.hg38 C3N-04273 HNSCC WXS tumor CPT0245230010 baebe3ef-dedd-4185-8107-9105500fa99b_wxs_gdc_realn.bam 25617241109 BAM harmonized CPTAC3 1a23cd74-d4f9-41a3-8441-1680d1ec3705 a5509d44cca7e260eeb9aaa1fdcf6f35 {"aliquot_tag": "ALQ_f330bc8c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.MethArray.Green.T C3N-04275 HNSCC Methylation_Array tumor CPT0245300006 203271740101_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f84a9b78-6142-44c7-b181-d80485568105 2d49c22f40774d24cfe29635d86ff0ff {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.MethArray.Red.T C3N-04275 HNSCC Methylation_Array tumor CPT0245300006 203271740101_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 45deee1e-c0a8-4357-83e1-f20d1149c90c e4dde9515954f12c4564310d9b9297a4 {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.miRNA-Seq.S40_L004_R1.T C3N-04275 HNSCC miRNA-Seq tumor CPT0245300009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTCAGA_S40_L004_R1_001.unaln.bam 224241674 BAM S40_L004_R1 submitted_unaligned CPTAC3 7db78c63-06dd-473a-b4b4-85ac3830ceab 7cb4545822183f81e254995eae599537 {"aliquot_tag": "ALQ_1f0b9c1c", "sample": "S40", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.miRNA-Seq.T.hg38 C3N-04275 HNSCC miRNA-Seq tumor CPT0245300009 8d82c1f9-5395-49c3-a71e-2524f9843a69_mirnaseq_gdc_realn.bam 249970448 BAM harmonized CPTAC3 e4892bdf-6697-484e-9f80-a221c94f1ec5 18beefa2bf3b717a96ec5439d6df1dd3 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.RNA-Seq.chimeric.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.chimeric.gdc_realn.bam 136059173 BAM chimeric harmonized CPTAC3 078eab4b-de93-47a9-8d65-28a91e30f05a 821bf57b7fefa7734f1999ae425e6ee9 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.RNA-Seq.genomic.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.genomic.gdc_realn.bam 9738467964 BAM genomic harmonized CPTAC3 16f4b7a1-00fa-4089-8bff-922f32c6cce2 5e8dcfaf39e771e9bd54a9816f478d27 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.RNA-Seq.S2_L001_R1.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R1_001.fastq.gz 4699080068 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 b85da967-79cd-45d7-87ba-33b89769eccb f72accf6229c40199e9476cd5c4f0102 {"aliquot_tag": "ALQ_1f0b9c1c", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.RNA-Seq.S2_L001_R2.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R2_001.fastq.gz 4633503877 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 e00fecd0-b271-4618-91a9-35e85f2b8a66 24508f1233e069dd74c8224a02f6c8e4 {"aliquot_tag": "ALQ_1f0b9c1c", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.RNA-Seq.transcriptome.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.transcriptome.gdc_realn.bam 11156856445 BAM transcriptome harmonized CPTAC3 3fb6604e-ba69-48f6-92c6-3b8a7b74e566 3487535d811331809d9aa0741bea8ac4 {"aliquot_tag": "ALQ_1f0b9c1c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.WGS.N C3N-04275 HNSCC WGS blood_normal CPT0245340002 CPT0245340002.WholeGenome.RP-1303.bam 72376442414 BAM submitted_aligned CPTAC3 5dfa26fa-9e3a-4d58-b97e-5e09231ae4c9 ab93f198bcdc33384c4d2d7ca9a42c41 {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04275.WGS.N.hg38 C3N-04275 HNSCC WGS blood_normal CPT0245340002 599c5049-fd3c-4556-983a-f53a845dca2b_wgs_gdc_realn.bam 110480523844 BAM harmonized CPTAC3 99b26ff9-3e31-4920-9ea0-ccb2ab7cc9f4 b8fcf779efb2497d3b6e2d7ac3f8fb0f {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04275.WGS.T C3N-04275 HNSCC WGS tumor CPT0245300006 CPT0245300006.WholeGenome.RP-1303.bam 82810280909 BAM submitted_aligned CPTAC3 9925979b-1d7b-4165-9b22-6af2553c71d5 b18ce2089a7839096589b72d65296916 {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.WGS.T.hg38 C3N-04275 HNSCC WGS tumor CPT0245300006 b933d5a8-8f91-4e04-bc03-35154301efda_wgs_gdc_realn.bam 120997728581 BAM harmonized CPTAC3 2afc6cb8-9a49-4700-b0a9-be6b58d22e5e 655f8ce59219ee0692b21ae63410547d {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.WXS.N C3N-04275 HNSCC WXS blood_normal CPT0245340002 CPT0245340002.WholeExome.RP-1303.bam 21191741529 BAM submitted_aligned CPTAC3 6eb0e719-9c31-4258-8d22-703a1aaa6f46 d986bd44b35dd00ccd35cbdecb0d61a8 {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04275.WXS.N.hg38 C3N-04275 HNSCC WXS blood_normal CPT0245340002 599c5049-fd3c-4556-983a-f53a845dca2b_wxs_gdc_realn.bam 29761107273 BAM harmonized CPTAC3 27f52cd1-5d8b-441c-80ab-c6bf1629f770 a49a2093af5ad15f535c140529dff6c3 {"aliquot_tag": "ALQ_7d59e354", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04275.WXS.T C3N-04275 HNSCC WXS tumor CPT0245300006 CPT0245300006.WholeExome.RP-1303.bam 25282246297 BAM submitted_aligned CPTAC3 990b5af7-48e8-4692-9f44-fe8db79181f7 bd5408078c7f221b9d79ea8e3d1d6f2a {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04275.WXS.T.hg38 C3N-04275 HNSCC WXS tumor CPT0245300006 b933d5a8-8f91-4e04-bc03-35154301efda_wxs_gdc_realn.bam 34623207019 BAM harmonized CPTAC3 2e8c0d56-24bb-4550-9c64-def877e2252e 058fda0288c0e2e7d2e45ce4d6f3c20a {"aliquot_tag": "ALQ_8fb4818d", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.MethArray.Green.T C3N-04276 HNSCC Methylation_Array tumor CPT0245350012 203271750010_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c460cbfe-99fc-4e91-aa7f-ecda0423fe06 bfca39a1969223ad2c65ab5c19a4451e {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.MethArray.Red.T C3N-04276 HNSCC Methylation_Array tumor CPT0245350012 203271750010_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 28169e8b-0ed9-4f07-8674-ad260b8427e4 c457c8ebd4b3a745f7a2b1083d3bf9d6 {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.miRNA-Seq.S41_L004_R1.T C3N-04276 HNSCC miRNA-Seq tumor CPT0245350009 190228_UNC32-K00270_0151_AHYLY3BBXX_GACGAC_S41_L004_R1_001.unaln.bam 250283338 BAM S41_L004_R1 submitted_unaligned CPTAC3 a243eb71-bdfe-4278-82f7-ecbe6fc11e63 9fd0244c8569c43a4ff7946692b4c7fd {"aliquot_tag": "ALQ_d7eb136c", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.miRNA-Seq.T.hg38 C3N-04276 HNSCC miRNA-Seq tumor CPT0245350009 170b159b-425f-4bd2-bfed-36d5b92686ca_mirnaseq_gdc_realn.bam 284325461 BAM harmonized CPTAC3 2206881f-1611-4e84-8dbc-37a183795a64 349feaa3958705be33e346d3fa83bf58 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.RNA-Seq.chimeric.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.chimeric.gdc_realn.bam 284551815 BAM chimeric harmonized CPTAC3 bcc6b27b-6dcf-4e80-bb94-a183600924e9 46e23bdc8114fd3bb6c9e8bff45b9bb1 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.RNA-Seq.genomic.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.genomic.gdc_realn.bam 9412975036 BAM genomic harmonized CPTAC3 84c1b73e-c79c-49db-a665-f22b4cec8bc1 1680fb177f6117e55fad1241c78860b7 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.RNA-Seq.S7_L002_R1.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R1_001.fastq.gz 4328601606 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 d1323de1-30ee-4d4e-8ea3-14da93af8015 c5730f9c848e662568f5b36d2fcae493 {"aliquot_tag": "ALQ_d7eb136c", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.RNA-Seq.S7_L002_R2.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R2_001.fastq.gz 5031131849 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 e323b48c-f22c-4f0c-8715-8647c21c71b1 f15bb0b0880cc1bbd973113c7659a0a8 {"aliquot_tag": "ALQ_d7eb136c", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.RNA-Seq.transcriptome.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.transcriptome.gdc_realn.bam 9059906864 BAM transcriptome harmonized CPTAC3 736ea983-14f2-4e29-b05b-634d07d39163 268f058087404b043d30bdd6718cdd33 {"aliquot_tag": "ALQ_d7eb136c", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.WGS.N C3N-04276 HNSCC WGS blood_normal CPT0245390002 CPT0245390002.WholeGenome.RP-1303.bam 63259704019 BAM submitted_aligned CPTAC3 77503410-57ab-4c0f-8111-3a7e02b36a54 4130b9565901b00b5790d3ed0b8f32dd {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04276.WGS.N.hg38 C3N-04276 HNSCC WGS blood_normal CPT0245390002 5b45e606-7f98-4778-9582-30f6b3c7de78_wgs_gdc_realn.bam 92038755481 BAM harmonized CPTAC3 f2302355-fdf5-430d-9751-2c6199089e99 00f92f3d8a3ea5a715dd6a9d1b8bf7eb {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04276.WGS.T C3N-04276 HNSCC WGS tumor CPT0245350012 CPT0245350012.WholeGenome.RP-1303.bam 82324422916 BAM submitted_aligned CPTAC3 4553db4c-6e83-4460-8576-1cf37c2cce3d 28f5e8869c3495afc1ac10c781b214df {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.WGS.T.hg38 C3N-04276 HNSCC WGS tumor CPT0245350012 75ea61f6-0343-404f-8cd0-84730edc2893_wgs_gdc_realn.bam 118628954593 BAM harmonized CPTAC3 00d73176-dd01-43d5-9526-30b79268df51 8782299e3f939544f0bbeac7221dbe7c {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.WXS.N C3N-04276 HNSCC WXS blood_normal CPT0245390002 CPT0245390002.WholeExome.RP-1303.bam 33626322148 BAM submitted_aligned CPTAC3 7a6f6b87-93c6-4977-b05b-a0ecdd23b48b 30f9abc1f846db5921176a5afc669b61 {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04276.WXS.N.hg38 C3N-04276 HNSCC WXS blood_normal CPT0245390002 5b45e606-7f98-4778-9582-30f6b3c7de78_wxs_gdc_realn.bam 46359510855 BAM harmonized CPTAC3 e2369007-57dc-4fec-a2ec-7d679ca60627 6cde713aaed11e8d683ff92bbcc2ecf8 {"aliquot_tag": "ALQ_85c927e5", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04276.WXS.T C3N-04276 HNSCC WXS tumor CPT0245350012 CPT0245350012.WholeExome.RP-1303.bam 27454972830 BAM submitted_aligned CPTAC3 540cc6bb-0bf6-4751-8762-b7a34dd2c5c9 6f38efd62156da019d26a7e3cc900d9c {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04276.WXS.T.hg38 C3N-04276 HNSCC WXS tumor CPT0245350012 75ea61f6-0343-404f-8cd0-84730edc2893_wxs_gdc_realn.bam 37513730258 BAM harmonized CPTAC3 db552d29-91c6-44ec-90dc-9e19efb6e211 2ea8be51eb175261ca3c636e7d88af15 {"aliquot_tag": "ALQ_5922fba5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.MethArray.Green.T C3N-04277 HNSCC Methylation_Array tumor CPT0245400006 203271740119_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 4f9bc0d5-70e6-43d1-b86c-179363b65d56 bcd43220fb52fc593413f16662bbbe83 {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.MethArray.Red.T C3N-04277 HNSCC Methylation_Array tumor CPT0245400006 203271740119_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 de2ab0e9-2037-4398-8651-10f7c9d2b54e 68558158715e5bf4a28ded1af1ac22ad {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.miRNA-Seq.A.hg38 C3N-04277 HNSCC miRNA-Seq tissue_normal CPT0245410006 15da5489-9175-47cd-ab24-3f7e49d7924a_mirnaseq_gdc_realn.bam 303527181 BAM harmonized CPTAC3 7c4bcb07-6fe5-4243-b693-d1c27b498480 950d90fc8f3fbadf33f3a8fb32605363 {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04277.miRNA-Seq.S23_L006_R1.T C3N-04277 HNSCC miRNA-Seq tumor CPT0245400009 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L006_R1_001.unaln.bam 167506981 BAM S23_L006_R1 submitted_unaligned CPTAC3 bd40db2d-a574-4543-b31f-2ca49144a0be 0597c5c78954aba1dafecfa187ca85f8 {"aliquot_tag": "ALQ_20eaca4", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.miRNA-Seq.S37_L006_R1.A C3N-04277 HNSCC miRNA-Seq tissue_normal CPT0245410006 190228_UNC32-K00270_0151_AHYLY3BBXX_CGGAAT_S37_L006_R1_001.unaln.bam 267912842 BAM S37_L006_R1 submitted_unaligned CPTAC3 9e35448c-26d8-405b-b1ee-8e5db8321606 af16c9942cd00b993308331bd08469cf {"aliquot_tag": "ALQ_afd19885", "sample": "S37", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04277.miRNA-Seq.T.hg38 C3N-04277 HNSCC miRNA-Seq tumor CPT0245400009 51da119c-1747-4158-9242-e00a79cf80e9_mirnaseq_gdc_realn.bam 190140639 BAM harmonized CPTAC3 6d1c59ec-c889-4569-a98d-65ad3cdd8b9a 19c19257848fb113c6f206204508444f {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.chimeric.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.chimeric.gdc_realn.bam 28610641 BAM chimeric harmonized CPTAC3 8eb3c400-5e06-4bac-992d-e84b43f290dd 144a1dad813d38ea6771cf000c36edf4 {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04277.RNA-Seq.chimeric.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.chimeric.gdc_realn.bam 35549232 BAM chimeric harmonized CPTAC3 d69ef686-55f3-4674-9ece-3b8e58db45e4 b2b1659b4cbd8f9b607c9826495ec338 {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.chimeric.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.chimeric.gdc_realn.bam 189491325 BAM chimeric harmonized CPTAC3 2d728144-9ea0-49f4-a5fd-dfc08cd51723 84035eebc20654d9773cbd9ab533bf78 {"aliquot_tag": "ALQ_74897a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.genomic.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.genomic.gdc_realn.bam 8309447314 BAM genomic harmonized CPTAC3 b9114f83-525e-402b-ba2f-eabe551e7e5e f73fba62fe0978cdfe07748ed436de9c {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04277.RNA-Seq.genomic.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.genomic.gdc_realn.bam 9775788617 BAM genomic harmonized CPTAC3 6dcd26d9-d7cd-4b2a-9cc4-40f025791ab8 5540a5667610c307b440b03d777804dd {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.genomic.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.genomic.gdc_realn.bam 12064687960 BAM genomic harmonized CPTAC3 e236dff9-e4b9-4667-a473-9d373bf9063e a36971cabac47bae85c665328b4bce7f {"aliquot_tag": "ALQ_74897a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.S15_L004_R1.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R1_001.fastq.gz 3952174166 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 fc30b03c-1648-4a7f-8e34-d327a5538c66 4f6f397f6170aafdef564a0d859db2bb {"aliquot_tag": "ALQ_afd19885", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04277.RNA-Seq.S15_L004_R2.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R2_001.fastq.gz 4610350558 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 038c716a-d778-4625-9aa5-ac21960d828b 48f5c4e00f82120009c7e25c6454a5bc {"aliquot_tag": "ALQ_afd19885", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04277.RNA-Seq.S34_L008_R1.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R1_001.fastq.gz 4177180141 FASTQ S34_L008_R1 submitted_unaligned CPTAC3 fa35aaf1-1460-423c-b1d2-130e3f34dec7 7f359846189077740f1435fb0e4a1ba6 {"aliquot_tag": "ALQ_20eaca4", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.S34_L008_R2.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R2_001.fastq.gz 4758977709 FASTQ S34_L008_R2 submitted_unaligned CPTAC3 84b1689d-1d99-4461-9aef-400ef5fde5d1 6fa0a6a5b2ca3ff6a4f77964f4736b54 {"aliquot_tag": "ALQ_20eaca4", "sample": "S34", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.S36_R1.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R1_001.fastq.gz 7078273403 FASTQ S36_R1 submitted_unaligned CPTAC3 c27a6295-f422-4b05-9ff7-585de5f2503e b3c3dc6d9f91157878a0c9f35f1531ce {"aliquot_tag": "ALQ_74897a95", "sample": "S36", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.S36_R2.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R2_001.fastq.gz 7340442869 FASTQ S36_R2 submitted_unaligned CPTAC3 a409cfc6-525a-469f-8ba3-d81b2dee59cf cd2e1eb12e3e8a6ce28ff17ce77a2318 {"aliquot_tag": "ALQ_74897a95", "sample": "S36", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.transcriptome.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.transcriptome.gdc_realn.bam 12123400658 BAM transcriptome harmonized CPTAC3 74112966-e6bb-47f5-8101-c77e6af950e2 674b51d39bb808544e06477c9a294a8c {"aliquot_tag": "ALQ_afd19885", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04277.RNA-Seq.transcriptome.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.transcriptome.gdc_realn.bam 12146968352 BAM transcriptome harmonized CPTAC3 2a6dd467-441f-41de-b641-b5ed664a7d0e a970dfad805dced618acc1def65cd24d {"aliquot_tag": "ALQ_20eaca4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.RNA-Seq.transcriptome.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.transcriptome.gdc_realn.bam 6930648272 BAM transcriptome harmonized CPTAC3 a927cd11-b71f-4814-bbae-fa5326dac325 c822b41c22e991e44873a4bfbd77c834 {"aliquot_tag": "ALQ_74897a95", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.WGS.N C3N-04277 HNSCC WGS blood_normal CPT0245440002 CPT0245440002.WholeGenome.RP-1303.bam 80571265488 BAM submitted_aligned CPTAC3 4d681d4d-1a43-4203-bdc0-bf7d3b3ac588 8850783af7086dec7c7b36c4715f97c2 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04277.WGS.N.hg38 C3N-04277 HNSCC WGS blood_normal CPT0245440002 ded41cd7-4f29-4c29-b3b3-0a88e5b36ce3_wgs_gdc_realn.bam 116942366055 BAM harmonized CPTAC3 a005d77e-4d3b-4266-a034-d87b3f806230 70d58080eca8ce6236c93490f1377864 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04277.WGS.T C3N-04277 HNSCC WGS tumor CPT0245400006 CPT0245400006.WholeGenome.RP-1303.bam 91014384486 BAM submitted_aligned CPTAC3 bb413b01-d4ac-4e64-bb50-9a666b094f42 0ecafd124374e4cdbe5a2fbcd2a531ab {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.WGS.T.hg38 C3N-04277 HNSCC WGS tumor CPT0245400006 d524b6aa-694b-4555-b859-2195222b7693_wgs_gdc_realn.bam 134848594620 BAM harmonized CPTAC3 1b631119-75aa-4cc0-af3b-408b98a5a38c 41dc901ec5ed39913dbe7a97b2b4643a {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.WXS.N C3N-04277 HNSCC WXS blood_normal CPT0245440002 CPT0245440002.WholeExome.RP-1303.bam 44902244519 BAM submitted_aligned CPTAC3 d94ea175-6347-4518-b134-1756dad715e1 47362ee4d989e00b671bb4628e312136 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04277.WXS.N.hg38 C3N-04277 HNSCC WXS blood_normal CPT0245440002 ded41cd7-4f29-4c29-b3b3-0a88e5b36ce3_wxs_gdc_realn.bam 61062282422 BAM harmonized CPTAC3 3b767a22-5f89-4998-88cb-399c914baf48 0c554cd2d3428fd2480e1e82af6fd815 {"aliquot_tag": "ALQ_605cd3ec", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04277.WXS.T C3N-04277 HNSCC WXS tumor CPT0245400006 CPT0245400006.WholeExome.RP-1303.bam 25363045569 BAM submitted_aligned CPTAC3 acfb451b-9fdf-4da1-8ded-fb34fa59cb09 430b62288f7efdbc762fb361bd8c77f6 {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04277.WXS.T.hg38 C3N-04277 HNSCC WXS tumor CPT0245400006 d524b6aa-694b-4555-b859-2195222b7693_wxs_gdc_realn.bam 34834114374 BAM harmonized CPTAC3 819f6a6c-f33c-4281-9074-b2d5380dadf7 19a942d1422b98987388a3b76a13f52a {"aliquot_tag": "ALQ_92b1b135", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.MethArray.Green.A C3N-04278 HNSCC Methylation_Array tissue_normal CPT0245460009 203281980233_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 ebd7ef93-bbc5-4df6-8eab-e1f8a6b0db3c ded189718d3a1f7aa67c5c85d8939eef {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.MethArray.Green.T C3N-04278 HNSCC Methylation_Array tumor CPT0245450006 203271740119_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 ed2aab08-4f67-4dbd-97f2-c045f3519d07 920a4404cc623d356cf1b6942f1cb4eb {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.MethArray.Red.A C3N-04278 HNSCC Methylation_Array tissue_normal CPT0245460009 203281980233_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 16494bdb-31f6-4ff3-932c-039678bfafb2 9c600ae4f5881c03043f2a4b9deca0fa {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.MethArray.Red.T C3N-04278 HNSCC Methylation_Array tumor CPT0245450006 203271740119_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 87f1754b-1fc0-40b8-91c2-64702a22f7b6 efe9f4d44a3c1724a6e243d5259f9a54 {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.miRNA-Seq.A.hg38 C3N-04278 HNSCC miRNA-Seq tissue_normal CPT0245460006 2c15f9b3-6905-401b-ba4f-c451775c8464_mirnaseq_gdc_realn.bam 238252662 BAM harmonized CPTAC3 b8d70f9a-3374-4d5c-9e8d-3d4fc2c51014 b518689cd850326022964ad349fdf047 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.miRNA-Seq.S24_L006_R1.T C3N-04278 HNSCC miRNA-Seq tumor CPT0245450009 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L006_R1_001.unaln.bam 159561133 BAM S24_L006_R1 submitted_unaligned CPTAC3 4b481012-e1b6-412c-a657-6f199a41ef0f edc49763f9fd98c36a5e11dcdcf890cf {"aliquot_tag": "ALQ_caee23d4", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.miRNA-Seq.S38_L006_R1.A C3N-04278 HNSCC miRNA-Seq tissue_normal CPT0245460006 190228_UNC32-K00270_0151_AHYLY3BBXX_CTAGCT_S38_L006_R1_001.unaln.bam 210162375 BAM S38_L006_R1 submitted_unaligned CPTAC3 0f1f837f-820a-4638-8029-68172fc88bdc c14c51f28eb60c941dfa50a28c3ec2db {"aliquot_tag": "ALQ_1df14495", "sample": "S38", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.miRNA-Seq.T.hg38 C3N-04278 HNSCC miRNA-Seq tumor CPT0245450009 7df1e38d-96c9-4fe4-a77e-f5e7b816f1ba_mirnaseq_gdc_realn.bam 180876809 BAM harmonized CPTAC3 8d0fabf3-2486-4352-90f3-e390764957e3 640b51c5f28e6356331af76cd01c26a8 {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.chimeric.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.chimeric.gdc_realn.bam 25841884 BAM chimeric harmonized CPTAC3 5eb4445c-3835-4a72-9a46-4a6118ff9c87 1e00a4745566006be81e60fc4939a598 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.RNA-Seq.chimeric.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.chimeric.gdc_realn.bam 37952639 BAM chimeric harmonized CPTAC3 ef36a33a-c83e-45c0-82f8-3b4481002442 ea64597bc295f56570952c95c6cdd08f {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.chimeric.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.chimeric.gdc_realn.bam 61225362 BAM chimeric harmonized CPTAC3 e76d177f-b3c8-4c69-baaf-71834b568286 d7809ff81d071811593f46c361065565 {"aliquot_tag": "ALQ_e4929f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.genomic.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.genomic.gdc_realn.bam 7912702425 BAM genomic harmonized CPTAC3 f10e016a-5e35-4ea4-9728-5aa419225ada 11f5773fac0e63390af8e0a3c501eb74 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.RNA-Seq.genomic.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.genomic.gdc_realn.bam 8745461994 BAM genomic harmonized CPTAC3 833bca11-0ae4-4e59-b16b-d720aeb98fa9 b9536694c9fc8507d89bf0c4d35bf100 {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.genomic.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.genomic.gdc_realn.bam 4998805159 BAM genomic harmonized CPTAC3 d867d212-e2ea-4894-8ca5-30a65238d8c5 2819c001e14870548a48ad4cb1443a5d {"aliquot_tag": "ALQ_e4929f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.S14_L004_R1.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3786960941 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 f116ba9a-6ffc-4e62-b9e9-41d02186ec2f 12620cf421ce72c82d48f3ca1f7cf1ba {"aliquot_tag": "ALQ_1df14495", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.RNA-Seq.S14_L004_R2.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4346845116 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 f377d00d-66c1-474f-84ec-80b073a8d44f 9e1a67d180921b0c98788889ab6a9548 {"aliquot_tag": "ALQ_1df14495", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.RNA-Seq.S36_L008_R1.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R1_001.fastq.gz 4006013754 FASTQ S36_L008_R1 submitted_unaligned CPTAC3 e93328cd-f431-4fe7-aea0-a58c7f07d5b6 7c33f75da312028897d59d4b7abddd51 {"aliquot_tag": "ALQ_caee23d4", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.S36_L008_R2.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R2_001.fastq.gz 4609375882 FASTQ S36_L008_R2 submitted_unaligned CPTAC3 48978f66-2b5d-44d0-b70f-1ef3ed77511c d1d2a8fc1ba9d5056e674e28a3bcfb4b {"aliquot_tag": "ALQ_caee23d4", "sample": "S36", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.S3_R1.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R1_001.fastq.gz 3195072942 FASTQ S3_R1 submitted_unaligned CPTAC3 26c90ee3-5dd2-4143-b84b-3bc562492edf 49ffe57d4e6b9265d31c2b8511b62f27 {"aliquot_tag": "ALQ_e4929f5", "sample": "S3", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.S3_R2.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R2_001.fastq.gz 3308412929 FASTQ S3_R2 submitted_unaligned CPTAC3 ae3e9d1f-d4a3-4ca9-b91d-d4d5514bc475 4999d515e7992870b0746e2e3639c4b3 {"aliquot_tag": "ALQ_e4929f5", "sample": "S3", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.transcriptome.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.transcriptome.gdc_realn.bam 11773338645 BAM transcriptome harmonized CPTAC3 f756de53-1cd3-4a0c-b5f6-b2289d575d30 0bd4c4c4e1f5a2724cae373440d68224 {"aliquot_tag": "ALQ_1df14495", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.RNA-Seq.transcriptome.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.transcriptome.gdc_realn.bam 10819062167 BAM transcriptome harmonized CPTAC3 73df4564-dbd0-4554-a4be-a1524bc0e9ac c928768b1b55e6c337d137db32aa862a {"aliquot_tag": "ALQ_caee23d4", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.RNA-Seq.transcriptome.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.transcriptome.gdc_realn.bam 2797667556 BAM transcriptome harmonized CPTAC3 fbed7a04-7716-4404-9174-727017076efd 4de8e0f12f62c25d87c51e47acfc6e06 {"aliquot_tag": "ALQ_e4929f5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.WGS.N C3N-04278 HNSCC WGS blood_normal CPT0245490002 CPT0245490002.WholeGenome.RP-1303.bam 88789519937 BAM submitted_aligned CPTAC3 c12b8c7e-aabb-4271-a583-568ddb53167b 93ae1fa4ac02cf2aef1256a6dc1b5b25 {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04278.WGS.N.hg38 C3N-04278 HNSCC WGS blood_normal CPT0245490002 1698bc58-9a69-423e-b393-b4cdf0838070_wgs_gdc_realn.bam 128708036498 BAM harmonized CPTAC3 c5ba06ee-14fc-4800-b977-bdbafe91c878 f5baf990efbb18c72235cfc8cf9f7599 {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04278.WGS.T C3N-04278 HNSCC WGS tumor CPT0245450006 CPT0245450006.WholeGenome.RP-1303.bam 80738739921 BAM submitted_aligned CPTAC3 f4a86786-c506-4ccc-a40e-f79f3b724f3e e476cdd591a141e04c494cc22ac2b9da {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.WGS.T.hg38 C3N-04278 HNSCC WGS tumor CPT0245450006 202c2042-86eb-4697-b84f-76937b28b503_wgs_gdc_realn.bam 116697926267 BAM harmonized CPTAC3 7098c6d8-04dc-435e-ac36-585af8d6f36c f15f0be304bd2f33baef1845428ad3f6 {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.WXS.A C3N-04278 HNSCC WXS tissue_normal CPT0245460009 CPT0245460009.WholeExome.RP-1303.bam 40439319031 BAM submitted_aligned CPTAC3 40feef2b-7214-4892-87c2-6d1e16da2275 3f8d905c6b445f4595038325457b9e48 {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.WXS.A.hg38 C3N-04278 HNSCC WXS tissue_normal CPT0245460009 fb693b26-501a-434f-9279-e4c2b17b72d7_wxs_gdc_realn.bam 56021522530 BAM harmonized CPTAC3 e56541f4-248a-4bf6-922c-a042241499d5 1116735efc9c3fd71cb4883a532475ee {"aliquot_tag": "ALQ_8d4e5904", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04278.WXS.N C3N-04278 HNSCC WXS blood_normal CPT0245490002 CPT0245490002.WholeExome.RP-1303.bam 29140132798 BAM submitted_aligned CPTAC3 7a9b3f96-df86-4f8a-974e-5bcdd6dcbb47 06860ff21273d2363be964ab5585c599 {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04278.WXS.N.hg38 C3N-04278 HNSCC WXS blood_normal CPT0245490002 1698bc58-9a69-423e-b393-b4cdf0838070_wxs_gdc_realn.bam 40074053707 BAM harmonized CPTAC3 9269ca26-631f-48e8-b8d2-7a5ac265a288 db8a3cdb3cb0930dbed49c95713726af {"aliquot_tag": "ALQ_98cc175d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04278.WXS.T C3N-04278 HNSCC WXS tumor CPT0245450006 CPT0245450006.WholeExome.RP-1303.bam 27087958101 BAM submitted_aligned CPTAC3 7d72f665-bc39-47af-9b9e-e0f52415f905 46c9ef4cbf8533188d602fcb567d5a8c {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04278.WXS.T.hg38 C3N-04278 HNSCC WXS tumor CPT0245450006 202c2042-86eb-4697-b84f-76937b28b503_wxs_gdc_realn.bam 36871221381 BAM harmonized CPTAC3 4866af2e-7573-410c-bd50-d10be39bf061 f4c74a4c26aa86b3ad553d2c13cf255f {"aliquot_tag": "ALQ_5a513e45", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.MethArray.Green.T C3N-04279 HNSCC Methylation_Array tumor CPT0245500006 203273200080_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 02487f95-2a97-410e-869d-51304bd4e628 342cb1e57e24f6032cb8312b4901a2de {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.MethArray.Red.T C3N-04279 HNSCC Methylation_Array tumor CPT0245500006 203273200080_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 7c23075b-4326-499f-b4c8-7928e79c8f47 2edcc24391f89713736e7b866260a684 {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.miRNA-Seq.S25_L006_R1.T C3N-04279 HNSCC miRNA-Seq tumor CPT0245500009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L006_R1_001.unaln.bam 244751801 BAM S25_L006_R1 submitted_unaligned CPTAC3 6ac6f941-9d08-4dd9-ba5d-20335bcfb165 0181acdbc766873e67a251602f75612b {"aliquot_tag": "ALQ_c9527f01", "sample": "S25", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.miRNA-Seq.T.hg38 C3N-04279 HNSCC miRNA-Seq tumor CPT0245500009 1b064c7f-d3db-40d4-b4e2-6ff0249c93c7_mirnaseq_gdc_realn.bam 272663647 BAM harmonized CPTAC3 ad8656e3-e04c-4d0f-be34-54b536ecfad0 a1e3ce203afdc183640ab6a34022a01a {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.RNA-Seq.chimeric.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.chimeric.gdc_realn.bam 49783521 BAM chimeric harmonized CPTAC3 6924b4f4-f122-42c0-8a73-546c146426c4 32b1e729ac866d7b683aee6ad50b99ac {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.RNA-Seq.genomic.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.genomic.gdc_realn.bam 10500000357 BAM genomic harmonized CPTAC3 414ed355-5100-47c6-b986-b92e9423856d 3af4a8096ec72a360dd792440719b05c {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.RNA-Seq.S3_L001_R1.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R1_001.fastq.gz 5067816097 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 e18cc86d-418f-4b3e-b147-a5d3ff1a666d ec2444a22912a24171ca72a460415d5a {"aliquot_tag": "ALQ_c9527f01", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.RNA-Seq.S3_L001_R2.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R2_001.fastq.gz 5664734231 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 5913e13e-6f12-424d-aa77-b133749389ef c1dba02702783155b889147e3492ef7a {"aliquot_tag": "ALQ_c9527f01", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.RNA-Seq.transcriptome.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.transcriptome.gdc_realn.bam 14648698623 BAM transcriptome harmonized CPTAC3 00bd3adf-ef1a-44f3-93ae-4853ac38c440 93def6d74b8aea1e856b3e40fc864a05 {"aliquot_tag": "ALQ_c9527f01", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.WGS.N C3N-04279 HNSCC WGS blood_normal CPT0245540002 CPT0245540002.WholeGenome.RP-1303.bam 63904079590 BAM submitted_aligned CPTAC3 58a16719-c89d-4928-99e1-79c2ef3b91cb d7998d1cadf84be353a9887df770dc89 {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04279.WGS.N.hg38 C3N-04279 HNSCC WGS blood_normal CPT0245540002 480b4742-a7e3-48ca-bf31-53b40d1456f0_wgs_gdc_realn.bam 92540253839 BAM harmonized CPTAC3 9fe2769e-a458-4a2e-b017-4c80ca2f097e 88b2e02e24427a8366804c31389b61cf {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04279.WGS.T C3N-04279 HNSCC WGS tumor CPT0245500006 CPT0245500006.WholeGenome.RP-1303.bam 64417570267 BAM submitted_aligned CPTAC3 40f3f878-3a17-4dd2-af08-960ec6bb5e99 f44d074ef9b2e95d9c87a41d55ca21ef {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.WGS.T.hg38 C3N-04279 HNSCC WGS tumor CPT0245500006 7792a94a-8f12-4bfd-9a83-a2350a24d202_wgs_gdc_realn.bam 92698666435 BAM harmonized CPTAC3 1bcfd7de-876e-4a89-a8de-a2b5ca428392 52c538048ea87d5354f136a435a470f4 {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.WXS.N C3N-04279 HNSCC WXS blood_normal CPT0245540002 CPT0245540002.WholeExome.RP-1303.bam 25103568805 BAM submitted_aligned CPTAC3 5d5bc1df-e691-4170-93c3-975129124a50 b3eae7a738e465256b6bcab743a6b730 {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04279.WXS.N.hg38 C3N-04279 HNSCC WXS blood_normal CPT0245540002 480b4742-a7e3-48ca-bf31-53b40d1456f0_wxs_gdc_realn.bam 34438232210 BAM harmonized CPTAC3 3897e540-b0e3-4082-8547-6515477b811d 62f03281653afc50dc969bb978609b61 {"aliquot_tag": "ALQ_ab000049", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04279.WXS.T C3N-04279 HNSCC WXS tumor CPT0245500006 CPT0245500006.WholeExome.RP-1303.bam 16311199090 BAM submitted_aligned CPTAC3 5caebd86-c768-4bc0-b213-dde36e776480 269b03282141ef535366c7c80d8dc55a {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04279.WXS.T.hg38 C3N-04279 HNSCC WXS tumor CPT0245500006 7792a94a-8f12-4bfd-9a83-a2350a24d202_wxs_gdc_realn.bam 23745058892 BAM harmonized CPTAC3 306f2a55-8846-4b02-b5f3-396fb6369671 f2d2013ac1d33f76c7feebb0e9cfb267 {"aliquot_tag": "ALQ_59ed6290", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.MethArray.Green.T C3N-04280 HNSCC Methylation_Array tumor CPT0245600006 203273200073_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 2e0d2669-df84-49ac-aca0-ed2ee4217f7f 0b9da0f75b16055443bdb3940894b5f5 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.MethArray.Red.T C3N-04280 HNSCC Methylation_Array tumor CPT0245600006 203273200073_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 217ff55e-3778-4227-84bb-e1e52f2f3949 26316724a7e46f1dc4c419d3bf9ffbbd {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.miRNA-Seq.S27_L006_R1.T C3N-04280 HNSCC miRNA-Seq tumor CPT0245600009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATTCCT_S27_L006_R1_001.unaln.bam 194265845 BAM S27_L006_R1 submitted_unaligned CPTAC3 ec878cc4-39e0-40cb-9532-1c1ad537c67e 199b802976f07fc3798e7e2029f0b4dc {"aliquot_tag": "ALQ_4fc60daf", "sample": "S27", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.miRNA-Seq.T.hg38 C3N-04280 HNSCC miRNA-Seq tumor CPT0245600009 66cfccf2-5cf0-4b5d-9a06-aeba36c1361a_mirnaseq_gdc_realn.bam 222701478 BAM harmonized CPTAC3 495ed7e8-a134-470e-8e6e-1f3cf409be37 1609048b09d847765fcb83b1f33532ec {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.chimeric.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.chimeric.gdc_realn.bam 36842183 BAM chimeric harmonized CPTAC3 eac4efcb-3e53-411c-8275-ce823cf8a5c2 ac5f76c2f0d082b9b18f7294a063ee27 {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.chimeric.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.chimeric.gdc_realn.bam 259489468 BAM chimeric harmonized CPTAC3 75e08857-4280-4e6b-8f2a-13ce2eca5cdc 26c24dd03302de3b39345e94194ee9b2 {"aliquot_tag": "ALQ_79daefb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.genomic.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.genomic.gdc_realn.bam 8180793267 BAM genomic harmonized CPTAC3 bc0998dc-9a0f-4af9-a7ba-e50ffb8c055f d6741b83a703032099b92765a49e7c56 {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.genomic.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.genomic.gdc_realn.bam 13752443573 BAM genomic harmonized CPTAC3 d5925d26-32ef-4501-acf6-a3fea534a2ef d781113754a0f604367e800cc6a9a587 {"aliquot_tag": "ALQ_79daefb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.S1_L001_R1.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R1_001.fastq.gz 3717916985 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 891ebcec-52f4-4ca9-ba9c-66030838f59f 3487acfe3780026ee44e6c4a3702591e {"aliquot_tag": "ALQ_4fc60daf", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.S1_L001_R2.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R2_001.fastq.gz 4278515231 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 bb6805d0-d597-4650-b2fa-2b49d5f94e07 e8e696182987b45ab10e070369c006ac {"aliquot_tag": "ALQ_4fc60daf", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.S30_R1.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R1_001.fastq.gz 9905839657 FASTQ S30_R1 submitted_unaligned CPTAC3 745c0577-a2df-4088-bfb7-e9cafae61616 12b95bc629c082dccca64816156db09b {"aliquot_tag": "ALQ_79daefb", "sample": "S30", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.S30_R2.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R2_001.fastq.gz 10266132413 FASTQ S30_R2 submitted_unaligned CPTAC3 f8be5a53-0cec-43c9-89ff-6313ea3f1424 7f0a2c2fe5298d75a8713d8a04deae3a {"aliquot_tag": "ALQ_79daefb", "sample": "S30", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.transcriptome.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.transcriptome.gdc_realn.bam 11934457478 BAM transcriptome harmonized CPTAC3 0760ec2c-7efd-4e95-b3af-4bfc33a084ce 0818877828ac8d3954a5455ab84e2602 {"aliquot_tag": "ALQ_4fc60daf", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.RNA-Seq.transcriptome.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.transcriptome.gdc_realn.bam 8986638798 BAM transcriptome harmonized CPTAC3 ab052b98-4d65-4380-b009-24b024333692 6bef34b7046a6c7f923b854ad1a97628 {"aliquot_tag": "ALQ_79daefb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.WGS.N C3N-04280 HNSCC WGS blood_normal CPT0245620002 CPT0245620002.WholeGenome.RP-1303.bam 67963317267 BAM submitted_aligned CPTAC3 186f0782-06f3-4a56-a135-8b83a0bbb2d2 4d639e0562a08efde7168e3e5e58d654 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04280.WGS.N.hg38 C3N-04280 HNSCC WGS blood_normal CPT0245620002 ddd24fc1-29d9-4388-9e4f-df69a9ba3818_wgs_gdc_realn.bam 98820582386 BAM harmonized CPTAC3 a0c3c495-4c00-4b9d-8a1e-5c18e1e26354 c950605e60f9e0d37dc4d1d3ccfaa114 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04280.WGS.T C3N-04280 HNSCC WGS tumor CPT0245600006 CPT0245600006.WholeGenome.RP-1303.bam 79439042933 BAM submitted_aligned CPTAC3 9c1a26c2-ab4a-4709-b28d-1a30349228fb 859c2e3016cf9d03db052ecac375a303 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.WGS.T.hg38 C3N-04280 HNSCC WGS tumor CPT0245600006 1bce2290-d038-47b2-92ac-a20cfc946a0f_wgs_gdc_realn.bam 117418916294 BAM harmonized CPTAC3 00827887-f68a-496e-b6e4-b638c981dd6b f69ce53878f82e07540830ee279172e4 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.WXS.N C3N-04280 HNSCC WXS blood_normal CPT0245620002 CPT0245620002.WholeExome.RP-1303.bam 23227317057 BAM submitted_aligned CPTAC3 a32922f2-1996-4f71-898a-e53c99e4b3ef 5f3c1f256bd3a8a3e79986aebb431887 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04280.WXS.N.hg38 C3N-04280 HNSCC WXS blood_normal CPT0245620002 ddd24fc1-29d9-4388-9e4f-df69a9ba3818_wxs_gdc_realn.bam 31357305752 BAM harmonized CPTAC3 aa9cbe3e-c02c-4cd2-a661-22267b4282b5 b53f99a966ddf2b4fb59b804a351bdc9 {"aliquot_tag": "ALQ_a2d48747", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04280.WXS.T C3N-04280 HNSCC WXS tumor CPT0245600006 CPT0245600006.WholeExome.RP-1303.bam 24635257039 BAM submitted_aligned CPTAC3 57fe8a3d-566d-4d3c-9bf1-d7b90b123ac3 373af67593488be4b99fc646d0a44156 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04280.WXS.T.hg38 C3N-04280 HNSCC WXS tumor CPT0245600006 1bce2290-d038-47b2-92ac-a20cfc946a0f_wxs_gdc_realn.bam 33650528950 BAM harmonized CPTAC3 0509fdc4-cdfe-4333-93db-4329e64996fc ee0b246a3ff3317645437479dcf7ff73 {"aliquot_tag": "ALQ_df79103e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.MethArray.Green.T C3N-04282 PDA Methylation_Array tumor CPT0246990006 203561450030_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8ac43f33-f39d-4a18-9c82-d7521f6d4c73 de700613ce166b90635a1f6b7630dcd3 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.MethArray.Red.T C3N-04282 PDA Methylation_Array tumor CPT0246990006 203561450030_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 91473de4-0fba-403c-863b-5108f5a93f02 113e37d2cd337281a32d8b769f51bf8d {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.miRNA-Seq.S30_L005_R1.T C3N-04282 PDA miRNA-Seq tumor CPT0246990009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGATC_S30_L005_R1_001.unaln.bam 257103157 BAM S30_L005_R1 submitted_unaligned CPTAC3 ec35cf8d-05b6-4010-8dc9-457c3a634436 96acbaad5c056dea97f679c47d9d0b14 {"aliquot_tag": "ALQ_8268c796", "sample": "S30", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.miRNA-Seq.T.hg38 C3N-04282 PDA miRNA-Seq tumor CPT0246990009 8c18775f-8108-49de-a460-79a1c78effb0_mirnaseq_gdc_realn.bam 294680142 BAM harmonized CPTAC3 8f1e49e1-087a-4b8a-b007-7f13a667c47e 4e694905f9b89679db95287d50cd3ca6 {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.RNA-Seq.chimeric.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.chimeric.gdc_realn.bam 36220855 BAM chimeric harmonized CPTAC3 13f149fc-c9e5-4242-a4a0-c13cc22a22b0 b6aa4acc9978a2bd863e20d3b70d2dd6 {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.RNA-Seq.genomic.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.genomic.gdc_realn.bam 8354009656 BAM genomic harmonized CPTAC3 660ffc8b-0133-42e3-90bd-1e29aec1b2b3 e62eebaa286d8151df338e24de6f07ba {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.RNA-Seq.S32_L008_R1.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R1_001.fastq.gz 4063994812 FASTQ S32_L008_R1 submitted_unaligned CPTAC3 48f5ca48-36ca-489c-a76e-2623665b37c3 2204a5fcd3bbc865f7a206c9438e8d93 {"aliquot_tag": "ALQ_8268c796", "sample": "S32", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.RNA-Seq.S32_L008_R2.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R2_001.fastq.gz 4277690135 FASTQ S32_L008_R2 submitted_unaligned CPTAC3 8fdb2cd9-06ab-4ce2-8a7f-505bf4301343 6597b8cfab9743a46d62afa8159a2b05 {"aliquot_tag": "ALQ_8268c796", "sample": "S32", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.RNA-Seq.transcriptome.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.transcriptome.gdc_realn.bam 12017077144 BAM transcriptome harmonized CPTAC3 99743a01-3836-4db2-b811-a8cc6d2b7672 b0937b767eed61cbe88599376dee1f8f {"aliquot_tag": "ALQ_8268c796", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.WGS.N C3N-04282 PDA WGS blood_normal CPT0247030002 CPT0247030002.WholeGenome.RP-1303.bam 73489342106 BAM submitted_aligned CPTAC3 f46215cf-6a46-4762-9d48-07d2a88de5ce 28c6d25eabf77dd830d337f6a5386c3b {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04282.WGS.N.hg38 C3N-04282 PDA WGS blood_normal CPT0247030002 855b4f54-6be8-4afb-bbd3-ee97f4f24be0_wgs_gdc_realn.bam 106703114601 BAM harmonized CPTAC3 fa9b3384-b318-4c8e-99d9-f3eff1da3b0b d4ca040fff8455eb3e8592fec6353ab2 {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04282.WGS.T C3N-04282 PDA WGS tumor CPT0246990006 CPT0246990006.WholeGenome.RP-1303.bam 103759528602 BAM submitted_aligned CPTAC3 99ec9a41-36af-4a05-92c8-ace73f988a11 338f4a8b9565206c89e4e82d237efbaf {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.WGS.T.hg38 C3N-04282 PDA WGS tumor CPT0246990006 b9201c7a-1778-46da-a3fe-855315fe403a_wgs_gdc_realn.bam 153752895005 BAM harmonized CPTAC3 4b4adaeb-0f11-4e13-81b9-6a44457ed7ac 19e93f03250cdd57f35d5afab20b01d3 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.WXS.N C3N-04282 PDA WXS blood_normal CPT0247030002 CPT0247030002.WholeExome.RP-1303.bam 24308464208 BAM submitted_aligned CPTAC3 4af2f9ed-4ed4-4696-b2cc-8299c7ef333e 0dfbd0c0cb621d1c58bcd505057b7a3b {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04282.WXS.N.hg38 C3N-04282 PDA WXS blood_normal CPT0247030002 855b4f54-6be8-4afb-bbd3-ee97f4f24be0_wxs_gdc_realn.bam 33740715868 BAM harmonized CPTAC3 88cf8b47-669f-4cb3-8693-86faab8ac059 eb5f11162f119b4bc382611723c9c14e {"aliquot_tag": "ALQ_de725cc3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04282.WXS.T C3N-04282 PDA WXS tumor CPT0246990006 CPT0246990006.WholeExome.RP-1303.bam 52032367899 BAM submitted_aligned CPTAC3 f2414ee9-4ec7-41be-a11b-2f01927b27d1 ed724bc6da925e81d4cffea7362a1a47 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04282.WXS.T.hg38 C3N-04282 PDA WXS tumor CPT0246990006 b9201c7a-1778-46da-a3fe-855315fe403a_wxs_gdc_realn.bam 72039656975 BAM harmonized CPTAC3 f02a832c-5a01-4b81-ab6b-b83ad3a3c15c f994312a28724b745ec01a27b62d1389 {"aliquot_tag": "ALQ_12d7da07", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.MethArray.Green.A C3N-04283 PDA Methylation_Array tissue_normal CPT0247050005 203561620153_R08C01_Grn.idat 13676211 IDAT Green NA CPTAC3 e3602b90-8032-46fb-b8e5-850aaaec8537 69167aed33c7406798df19887d9cfec6 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.MethArray.Green.T C3N-04283 PDA Methylation_Array tumor CPT0247040009 203561620064_R01C01_Grn.idat 13676212 IDAT Green NA CPTAC3 37702234-31bc-449a-b277-276646ca8f2b 1e88c116bb79e55ead2c2b227fb485bf {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.MethArray.Red.A C3N-04283 PDA Methylation_Array tissue_normal CPT0247050005 203561620153_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 e6d61efc-a1c0-41b2-9033-fa91694e36ba 1f5358a2832c14dfbb8e0983435ec547 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.MethArray.Red.T C3N-04283 PDA Methylation_Array tumor CPT0247040009 203561620064_R01C01_Red.idat 13676212 IDAT Red NA CPTAC3 d56d14d9-0230-4e2c-afc1-987b9ac50373 96ce42473552faa1effe60ba7f559794 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.miRNA-Seq.A.hg38 C3N-04283 PDA miRNA-Seq tissue_normal CPT0247050008 191d4059-d2f9-4667-af41-b657add5f0e2_mirnaseq_gdc_realn.bam 405369372 BAM harmonized CPTAC3 19a2ec61-ac7f-45f3-869b-0d3914d2a750 e66aacb1bed54267e04af1e8da7a54c6 {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.miRNA-Seq.S134_L008_R1.A C3N-04283 PDA miRNA-Seq tissue_normal CPT0247050008 190828_UNC32-K00270_0200_BH7GVJBBXY_CCGTCC_S134_L008_R1_001.unaln.bam 363015554 BAM S134_L008_R1 submitted_unaligned CPTAC3 99a84e05-79d3-4de7-b7a6-53f484b5d9fe fdd0f6b02fa256152a9504467f6f9a27 {"aliquot_tag": "ALQ_b1e7407d", "sample": "S134", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.miRNA-Seq.S17_L004_R1.T C3N-04283 PDA miRNA-Seq tumor CPT0247040006 190712_UNC32-K00270_0192_BH7HL3BBXY_GACGAC_S17_L004_R1_001.unaln.bam 214184402 BAM S17_L004_R1 submitted_unaligned CPTAC3 6ece89d2-f497-43fc-bfe7-73e90b5090cb 024e32e605bacbca61fec3f713b15695 {"aliquot_tag": "ALQ_6b3f44ca", "sample": "S17", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.miRNA-Seq.T.hg38 C3N-04283 PDA miRNA-Seq tumor CPT0247040006 ed60922c-bb9c-46f8-b289-c7dea5afe5fd_mirnaseq_gdc_realn.bam 243853128 BAM harmonized CPTAC3 81eaf3a9-719b-4e99-83c9-b7addfe9e5c6 c061b7f336f8a532bbe55f4093218e2e {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.RNA-Seq.chimeric.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.chimeric.gdc_realn.bam 35945383 BAM chimeric harmonized CPTAC3 e9a63f53-7337-4e4f-9687-ebd9dcb6faa0 279e40045cd635ec95c77b64cc81f8b0 {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.RNA-Seq.chimeric.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.chimeric.gdc_realn.bam 30557595 BAM chimeric harmonized CPTAC3 075cb67b-06aa-4526-a7b3-2caff7f8dc6c bcbb1829143952cee6892095968899d2 {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.RNA-Seq.genomic.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.genomic.gdc_realn.bam 8989527794 BAM genomic harmonized CPTAC3 ae59050d-76e0-4c42-a4ef-8a8871ac76df 84c3021d65964eb10f087d59301ef18e {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.RNA-Seq.genomic.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.genomic.gdc_realn.bam 8780238700 BAM genomic harmonized CPTAC3 c2fe4d94-3c59-4dd5-b640-56eddc127024 11c4675136fb4812b10851f0c39164a8 {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.RNA-Seq.S14_L005_R1.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R1_001.fastq.gz 4132845700 FASTQ S14_L005_R1 submitted_unaligned CPTAC3 8ed41278-1ed2-43c8-862c-5a7f96cec395 3c0152f24a6a3a113d250c379b6549a8 {"aliquot_tag": "ALQ_b1e7407d", "sample": "S14", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.RNA-Seq.S14_L005_R2.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R2_001.fastq.gz 4510226646 FASTQ S14_L005_R2 submitted_unaligned CPTAC3 e029eda1-f5a9-4e79-8ba3-65c0d6c76042 c28fd26f03e834d7ba24db21f25fe561 {"aliquot_tag": "ALQ_b1e7407d", "sample": "S14", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.RNA-Seq.S6_L002_R1.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 3966628698 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 3c3a6510-d2eb-4e12-88f5-5ed58b63d965 c9cc02d326cd90324d5e4d29f655ce7a {"aliquot_tag": "ALQ_6b3f44ca", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.RNA-Seq.S6_L002_R2.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 4636411008 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 fabcefa5-c60a-4ebc-8840-b9709950055a c1b8220494a00ba90e84c1e2c2a6335b {"aliquot_tag": "ALQ_6b3f44ca", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.RNA-Seq.transcriptome.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.transcriptome.gdc_realn.bam 12502097571 BAM transcriptome harmonized CPTAC3 2dbd1601-994b-4857-a9ea-27f65e6c894b 538452b38a36496cdba906fe1ce59e09 {"aliquot_tag": "ALQ_b1e7407d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.RNA-Seq.transcriptome.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.transcriptome.gdc_realn.bam 12159907215 BAM transcriptome harmonized CPTAC3 55c55916-1175-49e2-8cab-b1525c18c432 de2c516f842c04514562026cb5aa662a {"aliquot_tag": "ALQ_6b3f44ca", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.WGS.N C3N-04283 PDA WGS blood_normal CPT0247080002 CPT0247080002.WholeGenome.RP-1303.bam 57701659368 BAM submitted_aligned CPTAC3 62cf2fdb-aa4d-4f53-8435-4cd397e61c9c be4a2455786cd4b4fa05fac67818a965 {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04283.WGS.N.hg38 C3N-04283 PDA WGS blood_normal CPT0247080002 bc2dcac2-e6ee-4a15-a8d4-7c7ec9e20803_wgs_gdc_realn.bam 83831756286 BAM harmonized CPTAC3 68486306-850f-4b64-9c79-2448b592b7a2 01503550421a3c7870e7ec5ade3a28cd {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04283.WGS.T C3N-04283 PDA WGS tumor CPT0247040009 CPT0247040009.WholeGenome.RP-1303.bam 142915227908 BAM submitted_aligned CPTAC3 0d27a1bc-bd9e-4359-8513-07a62ee93f30 f67896fd1ea6d19e1822ca1c5377af11 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.WGS.T.hg38 C3N-04283 PDA WGS tumor CPT0247040009 3b4ac015-1920-44e7-b290-0362a5fdf236_wgs_gdc_realn.bam 208355110413 BAM harmonized CPTAC3 50752b3f-b8d9-44b0-8d6c-d726531c0093 93ec800db5e74daa57d3f61158aacae2 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.WXS.A C3N-04283 PDA WXS tissue_normal CPT0247050005 CPT0247050005.WholeExome.RP-1303.bam 26159471271 BAM submitted_aligned CPTAC3 1725dc7a-29c2-4129-b453-fdc48ee345ed 92771a40c563edecc21da254257f6a83 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.WXS.A.hg38 C3N-04283 PDA WXS tissue_normal CPT0247050005 abfacc07-0b67-4c14-a858-aee8fc48c843_wxs_gdc_realn.bam 36546346320 BAM harmonized CPTAC3 a46bd743-1752-456a-8b9d-3a15470659a0 ccc6fc22b57084443c33484a2ec61dc2 {"aliquot_tag": "ALQ_cf563cc0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04283.WXS.N C3N-04283 PDA WXS blood_normal CPT0247080002 CPT0247080002.WholeExome.RP-1303.bam 27368854504 BAM submitted_aligned CPTAC3 c8e3481a-aa09-41aa-9787-84a5ba053806 155c256e3768cc66aafd8177dc10baf2 {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04283.WXS.N.hg38 C3N-04283 PDA WXS blood_normal CPT0247080002 bc2dcac2-e6ee-4a15-a8d4-7c7ec9e20803_wxs_gdc_realn.bam 37730649862 BAM harmonized CPTAC3 bcc86397-2e8b-4ef5-8fa7-3f220f311398 4a80c736c80c6b89180d498265896c90 {"aliquot_tag": "ALQ_a9a26dd2", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04283.WXS.T C3N-04283 PDA WXS tumor CPT0247040009 CPT0247040009.WholeExome.RP-1303.bam 53275036035 BAM submitted_aligned CPTAC3 2541b0b5-3262-45e4-aea1-bb48a5fd4a00 679e3cccbe18d2ca88bfa1a997d99633 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04283.WXS.T.hg38 C3N-04283 PDA WXS tumor CPT0247040009 3b4ac015-1920-44e7-b290-0362a5fdf236_wxs_gdc_realn.bam 73948144506 BAM harmonized CPTAC3 5314f1eb-eee2-426b-8982-e854fae19b5c 7a1af684023b79073fd7fc07566036f4 {"aliquot_tag": "ALQ_fb80595b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.MethArray.Green.T C3N-04284 PDA Methylation_Array tumor CPT0247090006 203561450046_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 22b51d39-b5af-4a68-bba3-3e655913745d ad4bdfeef38d6cd0bced1ce9bc864233 {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.MethArray.Red.T C3N-04284 PDA Methylation_Array tumor CPT0247090006 203561450046_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 181674ef-8fee-4353-826d-3fc57019280a 2de7bcbbc271e74809b406f41fb606dd {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.miRNA-Seq.S23_L003_R1.T C3N-04284 PDA miRNA-Seq tumor CPT0247090013 190813_UNC32-K00270_0196_AH5MCWBBXY_TCGAAG_S23_L003_R1_001.unaln.bam 149310583 BAM S23_L003_R1 submitted_unaligned CPTAC3 8ec06311-31b1-48db-b0fb-1e7b9a03451d 0bab03d9b6f99e2e2c43e2361c3296b1 {"aliquot_tag": "ALQ_fade45b5", "sample": "S23", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.miRNA-Seq.T.hg38 C3N-04284 PDA miRNA-Seq tumor CPT0247090013 477e974f-bc22-441e-9b64-f15b6e2c8cdb_mirnaseq_gdc_realn.bam 170870153 BAM harmonized CPTAC3 ce8350c3-ca82-497b-b1f6-13e6d9e90cca 93f849e47a1b260c02c7f14c7d3399e0 {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.RNA-Seq.chimeric.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.chimeric.gdc_realn.bam 28773705 BAM chimeric harmonized CPTAC3 3c7b0dc0-0ae4-4a49-a82c-f7a9be7f6ddf b6e2a1f50a792ceecebc64c570baafce {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.RNA-Seq.genomic.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.genomic.gdc_realn.bam 7886783443 BAM genomic harmonized CPTAC3 43f8c6d4-7317-4efc-9aa5-631d11354b23 b57f79fcf326af37ed9e7bfa10a926f9 {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.RNA-Seq.S9_L003_R1.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R1_001.fastq.gz 3752966426 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 54995544-cea1-42b1-9af1-0c6fd5b2727d 1c6b47f1c52286e384f5bc3960f8c7eb {"aliquot_tag": "ALQ_fade45b5", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.RNA-Seq.S9_L003_R2.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R2_001.fastq.gz 3852584043 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 c7f1226b-4f3f-46c0-9361-c778198eff96 0a37b57ce1804d8a8423339843949c0d {"aliquot_tag": "ALQ_fade45b5", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.RNA-Seq.transcriptome.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.transcriptome.gdc_realn.bam 10906831101 BAM transcriptome harmonized CPTAC3 d90ac12b-5f40-402a-b07d-7654cb98aa9f 4e6a6636146a8126a52c173b81ee77b0 {"aliquot_tag": "ALQ_fade45b5", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.WGS.N C3N-04284 PDA WGS blood_normal CPT0247130002 CPT0247130002.WholeGenome.RP-1303.bam 64323938003 BAM submitted_aligned CPTAC3 375b14c1-a31d-4a1e-81ba-2004483156bb 2f1e3652b618562d04e14bc37d119312 {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04284.WGS.N.hg38 C3N-04284 PDA WGS blood_normal CPT0247130002 267e0dfc-7fad-4927-9713-c9930f88228e_wgs_gdc_realn.bam 92759383551 BAM harmonized CPTAC3 1159f63b-46c4-4644-9f13-31db06ddda11 908e762a2c2b8823f0f3eaa59d619e3a {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04284.WGS.T C3N-04284 PDA WGS tumor CPT0247090006 CPT0247090006.WholeGenome.RP-1303.PDO-18613.bam 111133657158 BAM submitted_aligned CPTAC3 1df6d799-13a8-415f-b93b-5cbdccd1f44b 35b73db5fa414032542ec947d9ad29d0 {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.WGS.T.hg38 C3N-04284 PDA WGS tumor CPT0247090006 57a37074-e98a-44e8-bd51-641dce6ec71a_wgs_gdc_realn.bam 160780257821 BAM harmonized CPTAC3 a27b8b86-02e7-4cc2-8cb3-2442be543a8a d6d36afaaff786cb5e890734901452de {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.WXS.N C3N-04284 PDA WXS blood_normal CPT0247130002 CPT0247130002.WholeExome.RP-1303.bam 23146184851 BAM submitted_aligned CPTAC3 b835e26b-e2c0-41b3-8a79-da40e1a0eb55 a46e548479bdf2b81841929d3cdbbfd9 {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04284.WXS.N.hg38 C3N-04284 PDA WXS blood_normal CPT0247130002 267e0dfc-7fad-4927-9713-c9930f88228e_wxs_gdc_realn.bam 31901277566 BAM harmonized CPTAC3 dad34357-4344-40ce-b9e5-794565a9c387 faca712c5b1553fcde076d0ae0ccec06 {"aliquot_tag": "ALQ_152e8f66", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04284.WXS.T C3N-04284 PDA WXS tumor CPT0247090006 CPT0247090006.WholeExome.RP-1303.bam 30050208600 BAM submitted_aligned CPTAC3 2ed8b8e0-b440-47ee-98ba-6229fdaecf6d 8d599e7e3337050c76360c3621bfa07a {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04284.WXS.T.hg38 C3N-04284 PDA WXS tumor CPT0247090006 57a37074-e98a-44e8-bd51-641dce6ec71a_wxs_gdc_realn.bam 40765262197 BAM harmonized CPTAC3 5bedf850-c4c7-4223-bb3e-5bc9eb227787 7572343c3e123379a98a67744dce0711 {"aliquot_tag": "ALQ_93af807b", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04288.RNA-Seq.chimeric.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.chimeric.gdc_realn.bam 117514977 BAM chimeric harmonized CPTAC3 f3fcc9c9-14c1-46a6-85bb-a35e583cd2be 67e0c843105b4c580733c3de0cfea430 {"aliquot_tag": "ALQ_36d3412f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04288.RNA-Seq.genomic.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.genomic.gdc_realn.bam 8642687385 BAM genomic harmonized CPTAC3 1c0f9685-9856-4611-af95-532f95b957c6 ea8b872b83f5b56ea4bafe6afca8b2bd {"aliquot_tag": "ALQ_36d3412f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04288.RNA-Seq.S56_R1.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R1_001.fastq.gz 6458078126 FASTQ S56_R1 submitted_unaligned CPTAC3 739c7d8c-9cf6-42fe-ac40-e9aa4e714697 56bad53ac19dd1f71bd6c2805eb57215 {"aliquot_tag": "ALQ_36d3412f", "sample": "S56", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04288.RNA-Seq.S56_R2.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R2_001.fastq.gz 6736441288 FASTQ S56_R2 submitted_unaligned CPTAC3 7769ab5f-e80e-4d7c-b204-e26c8dd7a925 552ba651ed1778af39bcd44d024bbf98 {"aliquot_tag": "ALQ_36d3412f", "sample": "S56", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04288.RNA-Seq.transcriptome.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.transcriptome.gdc_realn.bam 6327404540 BAM transcriptome harmonized CPTAC3 b18906aa-c9fa-4b98-8d86-781dd3abf6dd 76c48f78c8f261f1dd0404545fb19964 {"aliquot_tag": "ALQ_36d3412f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.MethArray.Green.T C3N-04312 GBM Methylation_Array tumor CPT0285670006 204372030011_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66bf3820-3c75-417b-863f-86e0b1e44443 3f5ce1fad8fd5c4893cd42647606cca8 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.MethArray.Red.T C3N-04312 GBM Methylation_Array tumor CPT0285670006 204372030011_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 0d747cb9-cda6-4975-af25-5e0b39b351c7 67254b80bea4828ea03573eab55d48e8 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.miRNA-Seq.S37_L002_R1.T C3N-04312 GBM miRNA-Seq tumor CPT0285670009 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 273660927 BAM S37_L002_R1 submitted_unaligned CPTAC3 e7f6effd-e817-4e2b-8c06-576689dab185 3db8326fa4fc6c21832b4c4dc62c531d {"aliquot_tag": "ALQ_aa49c4f0", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.miRNA-Seq.T.hg38 C3N-04312 GBM miRNA-Seq tumor CPT0285670009 51030b5e-f536-41d9-acf7-8908bfc76d55_mirnaseq_gdc_realn.bam 307510606 BAM harmonized CPTAC3 5421b9bc-b81d-4d9d-97f9-c80fc5dd5b3f d6b98cce43056b89d0ccd3f7abe72722 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.RNA-Seq.chimeric.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.chimeric.gdc_realn.bam 412012482 BAM chimeric harmonized CPTAC3 cbfd8fb4-027b-4a99-9615-b342027635b2 a26b016688ab93f240b2307fc37cabe7 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.RNA-Seq.genomic.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.genomic.gdc_realn.bam 9522050418 BAM genomic harmonized CPTAC3 c8516ebf-2636-4711-9258-85b2abba1685 4759239345abb0c614c62a8145de8205 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.RNA-Seq.S5_L002_R1.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R1_001.fastq.gz 4121966646 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 b9ffa766-00b4-43fc-9cdd-d894a2cdce9c 58c978bf02f4306e6d0708151bb8e7ea {"aliquot_tag": "ALQ_aa49c4f0", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.RNA-Seq.S5_L002_R2.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 7db80f50-b30d-44fc-9bc6-e03eb048a892 d6edbf143dafb72e6519f0966e519dce {"aliquot_tag": "ALQ_aa49c4f0", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.RNA-Seq.transcriptome.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.transcriptome.gdc_realn.bam 10048761309 BAM transcriptome harmonized CPTAC3 5a3e0587-83cd-4786-9d56-a28f288e7bc4 c035e3933ce4733c9639cb466d408fa8 {"aliquot_tag": "ALQ_aa49c4f0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.WGS.N C3N-04312 GBM WGS blood_normal CPT0280980002 CPT0280980002.WholeGenome.RP-2158.bam 23874939224 BAM submitted_aligned CPTAC3 9a3c3468-1221-4b91-bc33-9b090e555ab5 97a8ffb0f4066f0a6e88edb4b40cdbe6 {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04312.WGS.N.hg38 C3N-04312 GBM WGS blood_normal CPT0280980002 37205469-4d6f-486b-905f-c54392d21b4f_wgs_gdc_realn.bam 71335743020 BAM harmonized CPTAC3 014f16a2-6c7b-4b66-b1a8-2e5579964f02 c062b3939d85c8d8449078c2a5bbe569 {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04312.WGS.T C3N-04312 GBM WGS tumor CPT0285670006 CPT0285670006.WholeGenome.RP-2158.bam 26413654675 BAM submitted_aligned CPTAC3 74fffef0-59b5-41fd-8d10-2d385a875c65 93de20b937fb1e1a47c73b2b0af4e071 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.WGS.T.hg38 C3N-04312 GBM WGS tumor CPT0285670006 1c1ab64b-1728-442b-9e26-f37a1af24c9f_wgs_gdc_realn.bam 78477381968 BAM harmonized CPTAC3 f5e56aed-38b7-45b3-aebe-8a1da8246495 029a28ed71de12c082a040f94b254548 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.WXS.N C3N-04312 GBM WXS blood_normal CPT0280980002 CPT0280980002.WholeExome.RP-1303.bam 21334418826 BAM submitted_aligned CPTAC3 bc94877a-1cb7-4597-8480-977e29c70ed4 0fa9d88614fb7cbb869ba1c932f223fc {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04312.WXS.N.hg38 C3N-04312 GBM WXS blood_normal CPT0280980002 37205469-4d6f-486b-905f-c54392d21b4f_wxs_gdc_realn.bam 29415715888 BAM harmonized CPTAC3 8261bf69-e50f-4985-a7ff-67a826adb3b2 e3a5acfeba6ae62e5d174ab2298440aa {"aliquot_tag": "ALQ_1ca517db", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04312.WXS.T C3N-04312 GBM WXS tumor CPT0285670006 CPT0285670006.WholeExome.RP-1303.bam 24513284506 BAM submitted_aligned CPTAC3 930d98e1-e130-48bd-a15b-58abbaefcfb1 d1083ef1ef6807e26d8315a36ab52ee7 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04312.WXS.T.hg38 C3N-04312 GBM WXS tumor CPT0285670006 1c1ab64b-1728-442b-9e26-f37a1af24c9f_wxs_gdc_realn.bam 34483195424 BAM harmonized CPTAC3 4edbb076-c48b-46a8-9467-2ebb7b64d243 dc006ae116c838500f4f93128f5772cf {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04382.MethArray.Green.A C3N-04382 LUAD Methylation_Array tissue_normal CPT0240680006 203561620080_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 28023d7c-09c1-4396-9e1d-34c90d43e962 b37eaf7f93c0a7c7d5d0bc7355818fda {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.MethArray.Green.T C3N-04382 LUAD Methylation_Array tumor CPT0240670006 203561450102_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 00bc5a09-9d45-4f23-a793-1b298a009941 9699a407873611b6809674adf047d3d4 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.MethArray.Red.A C3N-04382 LUAD Methylation_Array tissue_normal CPT0240680006 203561620080_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 2791aa60-ea66-4260-bc7b-db5c82124887 afa5d5d72061c6a57a7bf2e4d442021e {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.MethArray.Red.T C3N-04382 LUAD Methylation_Array tumor CPT0240670006 203561450102_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 52380e05-1165-4e98-9161-76ad610083eb 0a557e7545650c5ea5cdf68005d5ebf8 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.miRNA-Seq.A.hg38 C3N-04382 LUAD miRNA-Seq tissue_normal CPT0240680009 e2ada810-c2fc-401d-872d-1da25a151bf7_mirnaseq_gdc_realn.bam 217549822 BAM harmonized CPTAC3 eccd96b5-22f2-4460-a442-43874b5996db b7ea0942b234b7f37e02ec413a827319 {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.miRNA-Seq.S11_L007_R1.T C3N-04382 LUAD miRNA-Seq tumor CPT0240670009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGTCA_S11_L007_R1_001.unaln.bam 209901696 BAM S11_L007_R1 submitted_unaligned CPTAC3 dfc231e6-2717-49d4-ab55-66d28dd069df 2395a4c6ca6c63b6ccfa52122c8dbb44 {"aliquot_tag": "ALQ_afdefe18", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.miRNA-Seq.S30_L006_R1.A C3N-04382 LUAD miRNA-Seq tissue_normal CPT0240680009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCAACA_S30_L006_R1_001.unaln.bam 192258215 BAM S30_L006_R1 submitted_unaligned CPTAC3 06cba9fa-683a-43ba-acf8-a2df40957b3d 4cd6b554e809bc9bb7fbe5b329d3a976 {"aliquot_tag": "ALQ_2d8e69c9", "sample": "S30", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.miRNA-Seq.T.hg38 C3N-04382 LUAD miRNA-Seq tumor CPT0240670009 b9672af0-e3e2-4d29-bfb7-869e2cfd4ae8_mirnaseq_gdc_realn.bam 229685023 BAM harmonized CPTAC3 234930ac-bc75-42fb-af7c-4a1113c792be f486c0e56a4e3b9ce310b6b893035701 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.RNA-Seq.chimeric.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.chimeric.gdc_realn.bam 34007452 BAM chimeric harmonized CPTAC3 eee24bcb-68b8-44b6-aa12-2964f29d4b7a 1a54259ce26ad3a08edc4175bfd21d2c {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.RNA-Seq.chimeric.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.chimeric.gdc_realn.bam 35129982 BAM chimeric harmonized CPTAC3 91291122-e6c4-4304-8f47-93f6930adfb7 53b69aa8c3b28903a6da8ab213160a25 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.RNA-Seq.genomic.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.genomic.gdc_realn.bam 11371395291 BAM genomic harmonized CPTAC3 5c3c0d7b-772b-4a7c-8e27-57c27389a34a fb0f97980ef5f601291e60ff8f4b1c1c {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.RNA-Seq.genomic.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.genomic.gdc_realn.bam 10902825782 BAM genomic harmonized CPTAC3 451c3f20-879e-4a5b-827d-afa2a6078e26 3cfca24428bca4fb6e61740b9aabd2a7 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.RNA-Seq.S29_L008_R1.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R1_001.fastq.gz 4348621087 FASTQ S29_L008_R1 submitted_unaligned CPTAC3 413aaa51-c49d-4e56-a205-ec549d3edc8a 38d29d8bfd4e6f4fb6b10cef19a99d57 {"aliquot_tag": "ALQ_afdefe18", "sample": "S29", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.RNA-Seq.S29_L008_R2.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R2_001.fastq.gz 4813764072 FASTQ S29_L008_R2 submitted_unaligned CPTAC3 872c5cfa-f7cd-4c40-abc0-b4f395034fa7 15814f17234aa23d4fa2f05151e4dba2 {"aliquot_tag": "ALQ_afdefe18", "sample": "S29", "lane": "L008", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.RNA-Seq.S9_L003_R1.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4485057847 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 00b5e191-d32c-4209-8035-5d23acfffb95 75f0e085dc60a16bcb2bdefbcbf35c25 {"aliquot_tag": "ALQ_2d8e69c9", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.RNA-Seq.S9_L003_R2.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4643808549 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 453f8f6e-e73a-4c27-be16-4fe12ebe015c a81cdec946d036a9de0f522a955cf943 {"aliquot_tag": "ALQ_2d8e69c9", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.RNA-Seq.transcriptome.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.transcriptome.gdc_realn.bam 8922710202 BAM transcriptome harmonized CPTAC3 0a1fa6bc-b28b-421d-bf3c-d235af553b13 20c3e8151138a2518fcc37c1deeede2a {"aliquot_tag": "ALQ_2d8e69c9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.RNA-Seq.transcriptome.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.transcriptome.gdc_realn.bam 10945797223 BAM transcriptome harmonized CPTAC3 a6b4312a-51b8-4af8-8da8-a6f1ed6ecf3b aafd680f997f33b036fae9d6ff5325f6 {"aliquot_tag": "ALQ_afdefe18", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.WGS.N C3N-04382 LUAD WGS blood_normal CPT0241700002 CPT0241700002.WholeGenome.RP-1303.bam 63447764583 BAM submitted_aligned CPTAC3 3ed2e15b-3c20-41b4-b551-4c5f113f7974 59fa2f81925567f50896b6bf74d5705f {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04382.WGS.N.hg38 C3N-04382 LUAD WGS blood_normal CPT0241700002 88cf49b3-0b2d-4a5e-afa5-aaae77123c55_wgs_gdc_realn.bam 92048733883 BAM harmonized CPTAC3 ca3a7c80-24b2-4eef-a824-158c4f53e2af 10fd3e822356e9cfd3c5e837df83d1b3 {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04382.WGS.T C3N-04382 LUAD WGS tumor CPT0240670006 CPT0240670006.WholeGenome.RP-1303.bam 77762274116 BAM submitted_aligned CPTAC3 490a91c9-0bca-4e29-ba25-473dfac13069 ee2b4bcb8992164126ad8365f06de6f6 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.WGS.T.hg38 C3N-04382 LUAD WGS tumor CPT0240670006 ac407b00-f068-483f-b21e-9b5cada5daf4_wgs_gdc_realn.bam 115434713550 BAM harmonized CPTAC3 1b1f792a-6c78-41a7-be1b-b7ff70c43db3 a5e5305818199f58f00d4c66acfc06f8 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.WXS.A C3N-04382 LUAD WXS tissue_normal CPT0240680006 CPT0240680006.WholeExome.RP-1303.bam 25059777011 BAM submitted_aligned CPTAC3 a25be4c1-0ecc-4172-8a6d-62d55d4fb086 3e2a9c43bb296fc9b4e5b1d1e2538dec {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.WXS.A.hg38 C3N-04382 LUAD WXS tissue_normal CPT0240680006 51498849-0222-4173-8a71-651b2348d37c_wxs_gdc_realn.bam 34784568147 BAM harmonized CPTAC3 4e30bf3f-0e51-4b36-a630-27d567583e51 4fb7d60f94509e9064d29bb1df621a1f {"aliquot_tag": "ALQ_bd317458", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04382.WXS.N C3N-04382 LUAD WXS blood_normal CPT0241700002 CPT0241700002.WholeExome.RP-1303.bam 22988328303 BAM submitted_aligned CPTAC3 61f7138c-19bb-4927-8de0-c1e1b1bf7065 35cdf75b04d31304738a1dd84d65f29f {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04382.WXS.N.hg38 C3N-04382 LUAD WXS blood_normal CPT0241700002 88cf49b3-0b2d-4a5e-afa5-aaae77123c55_wxs_gdc_realn.bam 31622632166 BAM harmonized CPTAC3 b657a5d9-35ed-45fa-aef5-066449dd2031 ad4b45200fe5a12c3b2800a52137a770 {"aliquot_tag": "ALQ_e7072391", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04382.WXS.T C3N-04382 LUAD WXS tumor CPT0240670006 CPT0240670006.WholeExome.RP-1303.bam 22285616195 BAM submitted_aligned CPTAC3 b8e85332-1e12-423f-b89c-45fcf60c989c 7eb283772e51469e06f54cc368328537 {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04382.WXS.T.hg38 C3N-04382 LUAD WXS tumor CPT0240670006 ac407b00-f068-483f-b21e-9b5cada5daf4_wxs_gdc_realn.bam 30412646037 BAM harmonized CPTAC3 daedaa8c-9345-4c69-89ac-1149fb350c8d 271eb566b9d3b292c77753a0a50d3bea {"aliquot_tag": "ALQ_3f61e389", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04384.MethArray.Green.A C3N-04384 LSCC Methylation_Array tissue_normal CPT0331120006 204930640041_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2744a895-e718-4b38-a356-a0be390951c5 f72324518268413c9b6c37fb034cdba2 {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.MethArray.Green.T C3N-04384 LSCC Methylation_Array tumor CPT0331100007 204930630081_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7afc8639-3430-4026-875a-1e363238c4db 8cde5f346982139e3774b86a0222f846 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.MethArray.Red.A C3N-04384 LSCC Methylation_Array tissue_normal CPT0331120006 204930640041_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 4cf983e7-d777-4ac1-8865-bc0f592f879b 20a296763ed798a1ee957b7a888ddbed {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.MethArray.Red.T C3N-04384 LSCC Methylation_Array tumor CPT0331100007 204930630081_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 1c370303-4209-468d-b7a8-236c619b71ca fc46f6f255e4b50a9e0f0d6e4130e235 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.miRNA-Seq.A.hg38 C3N-04384 LSCC miRNA-Seq tissue_normal CPT0331120009 fad742ef-f6b8-4f67-a941-d673c5574b23_mirnaseq_gdc_realn.bam 338703151 BAM harmonized CPTAC3 f21a3722-0862-41db-a821-97d481ac8f4e 2563230ea0b0ab17914ade6a720d91b4 {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.miRNA-Seq.S28_L007_R1.T C3N-04384 LSCC miRNA-Seq tumor CPT0331100010 201209_UNC32-K00270_0265_AHJ55WBBXY_CCGTCC_S28_L007_R1_001.unaln.bam 270836115 BAM S28_L007_R1 submitted_unaligned CPTAC3 5238c193-62a3-4b0a-9a58-8ea6ac5426a3 b485351d70d7e25ffcfb8fa2dcf5cfe5 {"aliquot_tag": "ALQ_dbf58dbb", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.miRNA-Seq.S9_L006_R1.A C3N-04384 LSCC miRNA-Seq tissue_normal CPT0331120009 201209_UNC32-K00270_0265_AHJ55WBBXY_CACTCA_S9_L006_R1_001.unaln.bam 312564513 BAM S9_L006_R1 submitted_unaligned CPTAC3 03050bb5-8c8d-4d79-bcd9-e24049b495e8 acb8055863641048b3208226a2cbb43d {"aliquot_tag": "ALQ_c1f2573e", "sample": "S9", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.miRNA-Seq.T.hg38 C3N-04384 LSCC miRNA-Seq tumor CPT0331100010 0e7c356b-26f7-4382-adca-df99e755f4cb_mirnaseq_gdc_realn.bam 295928689 BAM harmonized CPTAC3 714cc74c-33ac-4d07-a082-ce26ad43bfd2 9aa277a683e8e9d863abcacc01c4fb40 {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.RNA-Seq.chimeric.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.chimeric.gdc_realn.bam 142193468 BAM chimeric harmonized CPTAC3 f3bfe56d-c950-4bc8-a3d1-da3fbfaee0fe 47b4f8a9c4a86361d52c9c43842ad174 {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.RNA-Seq.chimeric.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.chimeric.gdc_realn.bam 88693789 BAM chimeric harmonized CPTAC3 2fd5f7d1-2909-4f0c-a6a5-a23cd35ae95b 497510e9c300facd4c1a47d5cccd9237 {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.RNA-Seq.genomic.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.genomic.gdc_realn.bam 8054413168 BAM genomic harmonized CPTAC3 6ff08ff4-f786-4e93-b1e6-4161dae46b8f b4da4d210301463fb393c23807e991eb {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.RNA-Seq.genomic.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.genomic.gdc_realn.bam 6236355045 BAM genomic harmonized CPTAC3 3184f16b-cd86-41bf-bcea-e397bb169127 bc1acd1cefbe744ade064178383dab49 {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.RNA-Seq.S25_L007_R1.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R1_001.fastq.gz 3161150739 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 2efb8b86-7963-494b-8cf8-070601581e4c 86a5337cd914c1c3d1d949e9668515f4 {"aliquot_tag": "ALQ_dbf58dbb", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.RNA-Seq.S25_L007_R2.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R2_001.fastq.gz 3461343173 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 e5cb1010-199f-44cf-b523-6fcade44dda5 2b05c5641b920de75ee424bfd51dfe22 {"aliquot_tag": "ALQ_dbf58dbb", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.RNA-Seq.S2_L001_R1.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R1_001.fastq.gz 4089256863 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 b2be76d3-2780-4b37-ac3d-00b8275570a3 eada057439b909e6f2b92bf272dbd2b9 {"aliquot_tag": "ALQ_c1f2573e", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.RNA-Seq.S2_L001_R2.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R2_001.fastq.gz 4544440132 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 54e12111-0171-43cc-bc0a-2258d1d9baa8 b35dc57faa81321f6b37ed33a7f0166c {"aliquot_tag": "ALQ_c1f2573e", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.RNA-Seq.transcriptome.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.transcriptome.gdc_realn.bam 10056724903 BAM transcriptome harmonized CPTAC3 0fd86dd2-72c1-47ed-99ed-5972c813eb7e 2cefe7fe59ac22c3f5ada0b36a2ded75 {"aliquot_tag": "ALQ_c1f2573e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.RNA-Seq.transcriptome.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.transcriptome.gdc_realn.bam 10790719891 BAM transcriptome harmonized CPTAC3 d11abf2c-b4a7-4a8a-bd7b-f202e3eb3f1a ac0d0ddd44bebc7af8c83f553caa183d {"aliquot_tag": "ALQ_dbf58dbb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.WGS.N C3N-04384 LSCC WGS blood_normal CPT0332110002 CPT0332110002.WholeGenome.RP-2158.bam 26808051879 BAM submitted_aligned CPTAC3 f2d7d0be-9e8e-4b4b-a101-c7ad831863e8 5ac075b829135c6c5deef4f472bd5370 {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04384.WGS.N.hg38 C3N-04384 LSCC WGS blood_normal CPT0332110002 1ea9100f-68e8-426c-8762-c3a317838e91_wgs_gdc_realn.bam 78453947533 BAM harmonized CPTAC3 ca53426a-b4f8-4919-9a13-ab0c1fb2c613 ebd91640375e411aac935ecfd31a9ca5 {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04384.WGS.T C3N-04384 LSCC WGS tumor CPT0331100007 CPT0331100007.WholeGenome.RP-2158.bam 24242977076 BAM submitted_aligned CPTAC3 d41e33d2-4f07-4464-af9e-85e6a9dfb964 1691ca01b9754b7e55fa40bc21f538b1 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.WGS.T.hg38 C3N-04384 LSCC WGS tumor CPT0331100007 8bf2e5ad-73d1-40ff-ac55-15bb691970af_wgs_gdc_realn.bam 73155208453 BAM harmonized CPTAC3 6e62f0a1-62b2-40a3-8b86-22116ae94408 b2525a9186b3086c5131c7240bf4c164 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.WXS.A C3N-04384 LSCC WXS tissue_normal CPT0331120006 CPT0331120006.WholeExome.RP-1303.bam 22577166982 BAM submitted_aligned CPTAC3 03269cbf-925c-400f-b4b9-0d456b569c63 88559a576d770747f2b69140d3bbfc15 {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04384.WXS.A.hg38 C3N-04384 LSCC WXS tissue_normal CPT0331120006 684c32d5-4b18-4102-aab9-bd86d7c12ee9_wxs_gdc_realn.bam 31056737452 BAM harmonized CPTAC3 d62256aa-0447-4e87-8ec1-fcdda541631a 4944a455eb841c9cd8db02c57907bace {"aliquot_tag": "ALQ_514d4aaf", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04384.WXS.N C3N-04384 LSCC WXS blood_normal CPT0332110002 CPT0332110002.WholeExome.RP-1303.bam 28330042483 BAM submitted_aligned CPTAC3 6d69112d-2b77-4676-b24a-4ee39790b026 b58d3d6752198bc3392b07b55edbde9c {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04384.WXS.N.hg38 C3N-04384 LSCC WXS blood_normal CPT0332110002 1ea9100f-68e8-426c-8762-c3a317838e91_wxs_gdc_realn.bam 40193987601 BAM harmonized CPTAC3 ede49932-131a-4ce5-9c2f-17c700037a0a 94afef57e150724abadb500ac593a6f3 {"aliquot_tag": "ALQ_2068eefb", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04384.WXS.T C3N-04384 LSCC WXS tumor CPT0331100007 CPT0331100007.WholeExome.RP-1303.bam 35107427907 BAM submitted_aligned CPTAC3 99125eac-a48f-481c-8448-5dfe181de91e 2f0665ee17c9d7908c3f4fd2cbab4ba1 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04384.WXS.T.hg38 C3N-04384 LSCC WXS tumor CPT0331100007 8bf2e5ad-73d1-40ff-ac55-15bb691970af_wxs_gdc_realn.bam 48896116567 BAM harmonized CPTAC3 9aaf57ce-dd5b-47a3-8922-4ee36b77720a ff934258da2bb3350175d0d8b42f6933 {"aliquot_tag": "ALQ_5c8a2959", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04445.MethArray.Green.A C3N-04445 LSCC Methylation_Array tissue_normal CPT0332540006 204930640041_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 bb1365ac-4851-4d3a-86e2-00f5f01d4546 0286a62b9872ddc8078cbae4b6dc87c7 {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.MethArray.Green.T C3N-04445 LSCC Methylation_Array tumor CPT0332520007 204930630078_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 0fcbb90b-2234-4894-85b9-6d5f0e7109bf 447098e1801d1ad88f7a1ee1e853f935 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.MethArray.Red.A C3N-04445 LSCC Methylation_Array tissue_normal CPT0332540006 204930640041_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 76487acd-151c-437d-99d1-4b5ffcafcfae e795c1287d22b1de902861e140c72708 {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.MethArray.Red.T C3N-04445 LSCC Methylation_Array tumor CPT0332520007 204930630078_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 6b0a6b62-70a9-4e97-9fae-d002e3c10385 bd7d6dd01a7552304d9f89a3980527b2 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.miRNA-Seq.A.hg38 C3N-04445 LSCC miRNA-Seq tissue_normal CPT0332540009 90ba4852-f665-4035-9ac9-074ea01ab6cc_mirnaseq_gdc_realn.bam 339224928 BAM harmonized CPTAC3 50221f14-2a74-4358-837d-334ed81737c6 ec573249ba146fa152fa2a0545530f27 {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.miRNA-Seq.S12_L006_R1.A C3N-04445 LSCC miRNA-Seq tissue_normal CPT0332540009 201209_UNC32-K00270_0265_AHJ55WBBXY_GACGAC_S12_L006_R1_001.unaln.bam 312384369 BAM S12_L006_R1 submitted_unaligned CPTAC3 30035f59-cff3-4d34-b8e8-30a025a83390 bf73105d0dad34361199d7a119e81272 {"aliquot_tag": "ALQ_e4cbfa15", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.miRNA-Seq.S34_L007_R1.T C3N-04445 LSCC miRNA-Seq tumor CPT0332520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTCCGC_S34_L007_R1_001.unaln.bam 282240822 BAM S34_L007_R1 submitted_unaligned CPTAC3 0fcbaf7f-cc5f-4ef4-9883-5dc7580149d3 2c575a96049594f54772d16d5b322652 {"aliquot_tag": "ALQ_b4c8650", "sample": "S34", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.miRNA-Seq.T.hg38 C3N-04445 LSCC miRNA-Seq tumor CPT0332520010 07e501ec-8f57-4271-90f0-911fea16a5fc_mirnaseq_gdc_realn.bam 305741236 BAM harmonized CPTAC3 48a371d6-30f2-4795-943c-b50bb6b71bae 352a137a119ea095ed6d19b8e8ff9c0d {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.RNA-Seq.chimeric.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.chimeric.gdc_realn.bam 187884085 BAM chimeric harmonized CPTAC3 0ce0f8ef-17cc-4e74-a0df-7329f240cce7 c9faa37be1c4150410214d850d0f6f7f {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.RNA-Seq.chimeric.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.chimeric.gdc_realn.bam 466483724 BAM chimeric harmonized CPTAC3 570c9972-7f81-43dc-9adb-f3f05af590d4 73b4b17d7a911829e37e798df97bd94f {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.RNA-Seq.genomic.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.genomic.gdc_realn.bam 6931970388 BAM genomic harmonized CPTAC3 a58d8145-8406-4812-9bf4-a3517de9e478 8b4673cca7365957f17d62044e6d2894 {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.RNA-Seq.genomic.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.genomic.gdc_realn.bam 8646989811 BAM genomic harmonized CPTAC3 1df864de-7a57-4514-b212-0f93c6d8a7cb 21d745fa5ab8a8b7ed4520bc7b58a875 {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.RNA-Seq.S11_L003_R1.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R1_001.fastq.gz 3367376011 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 799ebf27-76fc-441b-a909-acdd6ac3b457 6d2e0eaac75bfa4fd6b207a795196551 {"aliquot_tag": "ALQ_e4cbfa15", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.RNA-Seq.S11_L003_R2.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R2_001.fastq.gz 3560512926 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 2dd3b8ff-9556-4d0f-9a0d-32232c124842 bb36286628aa267a9bfa458c9bf2189a {"aliquot_tag": "ALQ_e4cbfa15", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.RNA-Seq.S22_L006_R1.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R1_001.fastq.gz 4184341827 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 765a6172-1c0f-4bad-b7a8-da971e31402d c34c1bb187a1f89d0f3f0e7426004123 {"aliquot_tag": "ALQ_b4c8650", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.RNA-Seq.S22_L006_R2.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R2_001.fastq.gz 4696197419 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 843e3841-e979-4135-b0dc-1b7f97be3091 4118d1a7d47f3e932f2e8e35afb34524 {"aliquot_tag": "ALQ_b4c8650", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.RNA-Seq.transcriptome.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.transcriptome.gdc_realn.bam 9768041159 BAM transcriptome harmonized CPTAC3 1922fcfa-e174-445a-9cf8-02fea26c2885 8bba9aae18528b6ccdcf6ed23e5430cb {"aliquot_tag": "ALQ_e4cbfa15", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.RNA-Seq.transcriptome.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.transcriptome.gdc_realn.bam 10537913755 BAM transcriptome harmonized CPTAC3 a7a05d37-db91-4199-9966-e27a4f28c2cb e4b6b29074cab75cdcd2c3473cc3d001 {"aliquot_tag": "ALQ_b4c8650", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.WGS.N C3N-04445 LSCC WGS blood_normal CPT0332610002 CPT0332610002.WholeGenome.RP-2158.bam 25594571712 BAM submitted_aligned CPTAC3 90cc388f-ca4b-4602-a62c-b307b6360204 a37a6c7948ce33d42067a3c5e8c0d883 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04445.WGS.N.hg38 C3N-04445 LSCC WGS blood_normal CPT0332610002 8a821d56-7c74-4f7a-95ee-471dc379af7e_wgs_gdc_realn.bam 79378403146 BAM harmonized CPTAC3 b45fb418-a93c-4bc5-a0e5-552665c85f13 6ce9132cb22e6827add7765879d79867 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04445.WGS.T C3N-04445 LSCC WGS tumor CPT0332520007 CPT0332520007.WholeGenome.RP-2158.bam 24290785613 BAM submitted_aligned CPTAC3 be2e7d9f-666e-440a-a149-803b96dddea3 8e8b53714a0be8143ce55baf1c8589af {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.WGS.T.hg38 C3N-04445 LSCC WGS tumor CPT0332520007 54af6878-ed0d-408c-b19d-16e2eb81b0fb_wgs_gdc_realn.bam 74235777348 BAM harmonized CPTAC3 c98dbadb-01ab-4823-b588-e879f233db55 1fa9bbb6de1146551c4c958fe76b6323 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.WXS.A C3N-04445 LSCC WXS tissue_normal CPT0332540006 CPT0332540006.WholeExome.RP-1303.bam 24171857056 BAM submitted_aligned CPTAC3 a1158d75-1498-4464-a73d-2a70122effce 2ab357d0e2caa3ddeb9411059796be00 {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04445.WXS.A.hg38 C3N-04445 LSCC WXS tissue_normal CPT0332540006 624a201b-bc52-491c-aa5d-5f86bd47f8f5_wxs_gdc_realn.bam 32465668539 BAM harmonized CPTAC3 7d528d92-3ab2-4ae6-839e-8e9826bfae17 552a242b6124b9d51afd37803e66e23f {"aliquot_tag": "ALQ_7474e784", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04445.WXS.N C3N-04445 LSCC WXS blood_normal CPT0332610002 CPT0332610002.WholeExome.RP-1303.bam 20906100037 BAM submitted_aligned CPTAC3 07a9d01a-0596-43cd-8e67-ce8e2e556c82 c2deb0e28245b29da4aea93ba4c8ee24 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04445.WXS.N.hg38 C3N-04445 LSCC WXS blood_normal CPT0332610002 8a821d56-7c74-4f7a-95ee-471dc379af7e_wxs_gdc_realn.bam 28158754966 BAM harmonized CPTAC3 97e07297-be3d-4dfb-ae09-c98465a70650 b53804ad37b719e0780ad6cda7ef6669 {"aliquot_tag": "ALQ_3d6dde43", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04445.WXS.T C3N-04445 LSCC WXS tumor CPT0332520007 CPT0332520007.WholeExome.RP-1303.bam 23009029138 BAM submitted_aligned CPTAC3 0fcec14e-e542-4457-a293-c1362302aef5 bd0a42d6b1fd1615e10ce189f411e855 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04445.WXS.T.hg38 C3N-04445 LSCC WXS tumor CPT0332520007 54af6878-ed0d-408c-b19d-16e2eb81b0fb_wxs_gdc_realn.bam 32169217638 BAM harmonized CPTAC3 21c14ad8-245f-4921-a484-fad3185e3999 b08916c8e91924777e29e9356b7653f5 {"aliquot_tag": "ALQ_8c3322b2", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04449.MethArray.Green.A C3N-04449 LSCC Methylation_Array tissue_normal CPT0332740006 204930630086_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 8ad31772-70c3-49d4-aa74-ca38c36d3911 7f9e0765b510265add82dcf94dde89d7 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.MethArray.Green.T C3N-04449 LSCC Methylation_Array tumor CPT0332720007 204930630114_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 02eb6162-1022-4799-8720-c394ffa1ef1b 3f6f08260e840aac92761a59b3a82741 {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.MethArray.Red.A C3N-04449 LSCC Methylation_Array tissue_normal CPT0332740006 204930630086_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 bdd1f272-1314-4eee-bb79-ff5a93d2dfee 9598d3d422ba6eb34407dbd6b80eeb99 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.MethArray.Red.T C3N-04449 LSCC Methylation_Array tumor CPT0332720007 204930630114_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 1fdb9ba8-fb24-4848-bb74-94303426fa4c fed7e7a1d010dfdec2e0146cf98ae077 {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.miRNA-Seq.A.hg38 C3N-04449 LSCC miRNA-Seq tissue_normal CPT0332740009 3b56e75a-a0b1-4ea7-9fcb-e9a2d57a3390_mirnaseq_gdc_realn.bam 291715755 BAM harmonized CPTAC3 ac1a46f3-2103-41ad-8afa-b8be369b81d0 8a2195dab8fb8076a06ce99afba2f44f {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.miRNA-Seq.S15_L006_R1.A C3N-04449 LSCC miRNA-Seq tissue_normal CPT0332740009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAATCG_S15_L006_R1_001.unaln.bam 269694284 BAM S15_L006_R1 submitted_unaligned CPTAC3 c60afc88-17dd-435a-bdd5-8ba29a39d31d 3c4f86006ee55496fb02135a91994736 {"aliquot_tag": "ALQ_a9035b1e", "sample": "S15", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.miRNA-Seq.S35_L007_R1.T C3N-04449 LSCC miRNA-Seq tumor CPT0332720010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGAAA_S35_L007_R1_001.unaln.bam 268242791 BAM S35_L007_R1 submitted_unaligned CPTAC3 1fe4b221-de07-4a90-b9ec-d752c14c05c5 89c6febd3e39cd1539e2bb92b22975df {"aliquot_tag": "ALQ_4684275b", "sample": "S35", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.miRNA-Seq.T.hg38 C3N-04449 LSCC miRNA-Seq tumor CPT0332720010 fa41f2d5-16a2-48bd-8c0f-005d198afe31_mirnaseq_gdc_realn.bam 297093426 BAM harmonized CPTAC3 472e8c5a-069a-4c5e-8c51-db8b7d2eaf84 59d381fa87275676c434824ef10932bf {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.RNA-Seq.chimeric.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.chimeric.gdc_realn.bam 253683544 BAM chimeric harmonized CPTAC3 02b37543-b80f-4ee4-b0e5-6a8ef479cdc4 cc12e51f36099409a4894a4fb9732e27 {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.RNA-Seq.chimeric.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.chimeric.gdc_realn.bam 449454651 BAM chimeric harmonized CPTAC3 72a36d7b-acde-41be-a263-112ad2d3e1a1 435c565e91b7129f023697957f427a56 {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.RNA-Seq.genomic.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.genomic.gdc_realn.bam 9550268902 BAM genomic harmonized CPTAC3 f1239973-435f-4634-9eba-50263a4c321c 0ca69dbf4a5a4aa7a5a5f9bdd0d8005a {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.RNA-Seq.genomic.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.genomic.gdc_realn.bam 7704178222 BAM genomic harmonized CPTAC3 6f58e790-fdf0-4020-b1f3-375748636382 076795197cb623eaa3a37e29e20c2b47 {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.RNA-Seq.S21_L006_R1.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R1_001.fastq.gz 3838291981 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 c10721f5-e95f-40de-8b5d-908d955cead2 4fb04572c6568299728933bdf9eea9fd {"aliquot_tag": "ALQ_4684275b", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.RNA-Seq.S21_L006_R2.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R2_001.fastq.gz 4245083460 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 1c1d820c-2e0a-449d-8d17-d6c10f2f732b 41be9a98fed6d4fdb7f44a3fed019329 {"aliquot_tag": "ALQ_4684275b", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.RNA-Seq.S9_L003_R1.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R1_001.fastq.gz 4691535789 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 a9eddd7c-e293-40f3-9bdc-ffe657565d83 5baa4bf04d9b48579ff426c04b58273b {"aliquot_tag": "ALQ_a9035b1e", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.RNA-Seq.S9_L003_R2.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R2_001.fastq.gz 4910314542 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 b04a1909-634a-4fce-8ed4-9224e26ccbda f4da99cbea5205f9f854f342319c4487 {"aliquot_tag": "ALQ_a9035b1e", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.RNA-Seq.transcriptome.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.transcriptome.gdc_realn.bam 12770362025 BAM transcriptome harmonized CPTAC3 d4f58cf8-9a5c-44d0-8665-e62b05eedf25 50ca9c31815fae8b55c362d9814612d6 {"aliquot_tag": "ALQ_a9035b1e", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.RNA-Seq.transcriptome.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.transcriptome.gdc_realn.bam 11444686392 BAM transcriptome harmonized CPTAC3 6e2cd636-3fce-4001-aedc-a59a3a016d29 28848f89d0a5fa4270111bfca9d81ed5 {"aliquot_tag": "ALQ_4684275b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.WGS.N C3N-04449 LSCC WGS blood_normal CPT0332810002 CPT0332810002.WholeGenome.RP-2158.bam 30070111755 BAM submitted_aligned CPTAC3 ce8a6ac8-7c3f-454e-848e-326805f4d3ee ecdba8c3304b730fea4e2c8f4f5a659c {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04449.WGS.N.hg38 C3N-04449 LSCC WGS blood_normal CPT0332810002 bd038019-338b-4341-b111-d76b682045c5_wgs_gdc_realn.bam 94230223745 BAM harmonized CPTAC3 c5d44044-34bb-4ca1-beb1-299a24a41cff c46ae39b85002ca20d890044c8b99f88 {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04449.WGS.T C3N-04449 LSCC WGS tumor CPT0332720007 CPT0332720007.WholeGenome.RP-2158.bam 25102344713 BAM submitted_aligned CPTAC3 f8ac2ef3-76ea-4c5b-9a94-6cb3fed3911d ade87a169eb9b5d4b732d42a70ff284e {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.WGS.T.hg38 C3N-04449 LSCC WGS tumor CPT0332720007 c3a426ad-41bd-46ac-9b5d-5ec8534d4ef3_wgs_gdc_realn.bam 72195400274 BAM harmonized CPTAC3 b4048d13-1d6b-4844-9982-480a40ccb831 09a5b0f05249765cdc1495859102bd3f {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.WXS.A C3N-04449 LSCC WXS tissue_normal CPT0332740006 CPT0332740006.WholeExome.RP-1303.bam 36413072593 BAM submitted_aligned CPTAC3 37217e58-6f6e-41b0-bf22-e64d15a5dda7 bdb5ceb6cce98eedd9396e01e757c241 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04449.WXS.A.hg38 C3N-04449 LSCC WXS tissue_normal CPT0332740006 2486362f-a1a8-4a12-afc9-aa0267e8267a_wxs_gdc_realn.bam 50036075363 BAM harmonized CPTAC3 82acd8c7-337d-47d0-b788-107513782d22 7741d64099774b800c2d190c5602f442 {"aliquot_tag": "ALQ_39bc468f", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04449.WXS.N C3N-04449 LSCC WXS blood_normal CPT0332810002 CPT0332810002.WholeExome.RP-1303.bam 25275331083 BAM submitted_aligned CPTAC3 d330fc75-e016-4ed1-95fa-9594f1facfae 2e36f0c92c7a523d198263265b834fdc {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04449.WXS.N.hg38 C3N-04449 LSCC WXS blood_normal CPT0332810002 bd038019-338b-4341-b111-d76b682045c5_wxs_gdc_realn.bam 34391597060 BAM harmonized CPTAC3 6b486ca4-b2dc-42ba-a2b9-4e5c4d2b9ebb a9cab4bd986d3e8381276b1375969143 {"aliquot_tag": "ALQ_767bf33", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04449.WXS.T C3N-04449 LSCC WXS tumor CPT0332720007 CPT0332720007.WholeExome.RP-1303.bam 26830898453 BAM submitted_aligned CPTAC3 3c5e6c14-4d8b-4cc1-8a22-b4ef004a97ac 4e1617236ab21a649030c2edfd4b7c5a {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04449.WXS.T.hg38 C3N-04449 LSCC WXS tumor CPT0332720007 c3a426ad-41bd-46ac-9b5d-5ec8534d4ef3_wxs_gdc_realn.bam 37025014593 BAM harmonized CPTAC3 49444f7c-e571-4563-ae5f-8c675f26a63f 1bcd7cfa611f209b3247494e2bba38ab {"aliquot_tag": "ALQ_c1fb83b9", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04457.MethArray.Green.A C3N-04457 LSCC Methylation_Array tissue_normal CPT0260800006 204372030074_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4687fb39-5b71-4798-bb88-d403e25fd674 5fbeeffad40d6f8925220d4d3bc4db07 {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.MethArray.Green.T C3N-04457 LSCC Methylation_Array tumor CPT0259530006 204367490090_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 98e7aa2b-fee5-48f0-83f5-b93d74303fb7 4ba54892b0c32ccd6b13cf05305bde8d {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.MethArray.Red.A C3N-04457 LSCC Methylation_Array tissue_normal CPT0260800006 204372030074_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 ed21dc13-4f36-4204-9a52-fa517f1080c3 d090203bb8de4f18574d15f0b823d417 {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.MethArray.Red.T C3N-04457 LSCC Methylation_Array tumor CPT0259530006 204367490090_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 932a97b3-c545-4fc8-8e1d-bc188a51733b 70f9c7cf0b9d03c232d6924849889b17 {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.miRNA-Seq.A.hg38 C3N-04457 LSCC miRNA-Seq tissue_normal CPT0260800009 d2a4bcf5-ead1-4fa4-aae1-e0aa0aa35535_mirnaseq_gdc_realn.bam 287817777 BAM harmonized CPTAC3 bcf61519-0bed-4b7c-b409-7067bd5533ea b192ea56d05a9c8b493caba28ebc90dd {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.miRNA-Seq.S11_L007_R1.A C3N-04457 LSCC miRNA-Seq tissue_normal CPT0260800009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTTGTA_S11_L007_R1_001.unaln.bam 259106673 BAM S11_L007_R1 submitted_unaligned CPTAC3 71b321de-f02c-4a48-9d6f-631a6faf617e a75d8ff9286943d55912c3cf3487992a {"aliquot_tag": "ALQ_65d14405", "sample": "S11", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.miRNA-Seq.S12_L006_R1.T C3N-04457 LSCC miRNA-Seq tumor CPT0259530009 200224_UNC31-K00269_0267_AHC722BBXY_CTTGTA_S12_L006_R1_001.unaln.bam 215997748 BAM S12_L006_R1 submitted_unaligned CPTAC3 7b219143-5964-40ed-9049-d656a163dc6e dbbdba059fd3a6d3406289b12e5c718e {"aliquot_tag": "ALQ_85f86f3b", "sample": "S12", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.miRNA-Seq.T.hg38 C3N-04457 LSCC miRNA-Seq tumor CPT0259530009 c639be6a-5009-4d92-b78f-2e57b12894c7_mirnaseq_gdc_realn.bam 251350569 BAM harmonized CPTAC3 ad4b750d-512f-4edc-ab4e-2a0c318ea16e 34e712d7d527eb1e361ddefb2c957718 {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.RNA-Seq.chimeric.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.chimeric.gdc_realn.bam 98688423 BAM chimeric harmonized CPTAC3 ae829ef1-0e16-417e-8439-12bfc4123541 9d977a9610e8ada55d45f0d8562660af {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.RNA-Seq.chimeric.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.chimeric.gdc_realn.bam 73088075 BAM chimeric harmonized CPTAC3 744890ea-d5a1-4da6-b597-8e06182ea7f2 ee5e82c1278ccb5b691bf9584cf459fe {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.RNA-Seq.genomic.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.genomic.gdc_realn.bam 6890794108 BAM genomic harmonized CPTAC3 5e3ced65-f207-4639-bbee-40d84638a17a 10dc4b8a0e75120f4858e2db9001ec92 {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.RNA-Seq.genomic.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.genomic.gdc_realn.bam 7889453832 BAM genomic harmonized CPTAC3 19b5ff75-4865-42e5-912a-6401c1112817 cdd77adc40b241cc9d74debb54b0f0e8 {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.RNA-Seq.S28_L007_R1.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R1_001.fastq.gz 3961330401 FASTQ S28_L007_R1 submitted_unaligned CPTAC3 898b5235-d088-45e4-8efe-ba6402926ccd b3569ec2f3ca6144b08de16ccfc0057b {"aliquot_tag": "ALQ_85f86f3b", "sample": "S28", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.RNA-Seq.S28_L007_R2.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R2_001.fastq.gz 4195125717 FASTQ S28_L007_R2 submitted_unaligned CPTAC3 57a6f36d-d47f-489a-a05e-1067ecc7d2c3 c3b506a288be10f4ac582eff779e7942 {"aliquot_tag": "ALQ_85f86f3b", "sample": "S28", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.RNA-Seq.S9_L003_R1.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R1_001.fastq.gz 3326306536 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 df26ed72-b1f1-4914-9c11-eb8480bf930e 57cdb3668f9a5301f02b6aff8289da54 {"aliquot_tag": "ALQ_65d14405", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.RNA-Seq.S9_L003_R2.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R2_001.fastq.gz 3699273678 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 563583e0-0013-45cd-b118-b3647d97e36c 932f4be16365aec5b7b84a9e3b860dbb {"aliquot_tag": "ALQ_65d14405", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.RNA-Seq.transcriptome.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.transcriptome.gdc_realn.bam 8200530140 BAM transcriptome harmonized CPTAC3 e2710b9c-4889-48fd-a08d-c54c7d4dfc14 15dcedecd0b826099c51764dbc26cd74 {"aliquot_tag": "ALQ_65d14405", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.RNA-Seq.transcriptome.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.transcriptome.gdc_realn.bam 11495069316 BAM transcriptome harmonized CPTAC3 039bd586-d07f-4587-ba46-147da4059117 6f3dc02aa1df4aff3dfa8d5e1acd564c {"aliquot_tag": "ALQ_85f86f3b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.WGS.N C3N-04457 LSCC WGS blood_normal CPT0260890002 CPT0260890002.WholeGenome.RP-2158.bam 22722416510 BAM submitted_aligned CPTAC3 d476de98-3d45-4779-b4dc-106df9fc41d2 89135bf228e5d3a0f8210ab41c8674cd {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04457.WGS.N.hg38 C3N-04457 LSCC WGS blood_normal CPT0260890002 0f0cf4d8-bb22-4f10-a486-5277dc30f309_wgs_gdc_realn.bam 67836384995 BAM harmonized CPTAC3 0fbcbb37-b611-468e-bd5a-ffa8a2c24894 ae1f46c1a4978752655934dab3088db3 {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04457.WGS.T C3N-04457 LSCC WGS tumor CPT0259530006 CPT0259530006.WholeGenome.RP-2158.bam 26804357960 BAM submitted_aligned CPTAC3 bc9cbbde-681f-4653-9ee8-535cae46babc a81b63d713cd2f7253b5a1ca1a415dcb {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.WGS.T.hg38 C3N-04457 LSCC WGS tumor CPT0259530006 54c6972a-c420-4047-87bc-ed4566f36a28_wgs_gdc_realn.bam 81098989280 BAM harmonized CPTAC3 1832e3d6-cc03-4573-9524-0d738f7a7c48 8265eedae45fb44000f093a2452fae01 {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.WXS.A C3N-04457 LSCC WXS tissue_normal CPT0260800006 CPT0260800006.WholeExome.RP-1303.bam 25612854584 BAM submitted_aligned CPTAC3 c5894f75-9dd0-4150-aa57-ce943642dbd8 aee1be2e5d003ab73f37e51fc85e17ed {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.WXS.A.hg38 C3N-04457 LSCC WXS tissue_normal CPT0260800006 af265c88-1bd1-4de4-8148-732544f8d654_wxs_gdc_realn.bam 35175355771 BAM harmonized CPTAC3 ba750cd3-21ae-4c23-afd3-2ac77b1c7360 d048ebe4f610b130a255098ad9c08f3d {"aliquot_tag": "ALQ_f56e5994", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04457.WXS.N C3N-04457 LSCC WXS blood_normal CPT0260890002 CPT0260890002.WholeExome.RP-1303.bam 25601192662 BAM submitted_aligned CPTAC3 48ac4e78-51f0-4ba9-9232-8468d3d4c1d3 ef74fbc91c92ead4093578ce2c510603 {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04457.WXS.N.hg38 C3N-04457 LSCC WXS blood_normal CPT0260890002 0f0cf4d8-bb22-4f10-a486-5277dc30f309_wxs_gdc_realn.bam 34412972934 BAM harmonized CPTAC3 ae5235ba-ef3e-44c4-9e94-defa1cdb90cf b45a2429efd1858e79bfafea3386c422 {"aliquot_tag": "ALQ_ff13fffc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04457.WXS.T C3N-04457 LSCC WXS tumor CPT0259530006 CPT0259530006.WholeExome.RP-1303.bam 48860848917 BAM submitted_aligned CPTAC3 bf08a1fe-45ae-40bf-8ebf-e51316111b19 538c3f76f4c5db4ccde3464e87c24a45 {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04457.WXS.T.hg38 C3N-04457 LSCC WXS tumor CPT0259530006 54c6972a-c420-4047-87bc-ed4566f36a28_wxs_gdc_realn.bam 66931968110 BAM harmonized CPTAC3 c96ca016-ada7-433f-9879-d535410a8b32 f6d24a5e7889dd09860a5b6f0f82afbb {"aliquot_tag": "ALQ_154772aa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.MethArray.Green.A C3N-04609 LSCC Methylation_Array tissue_normal CPT0261370005 204367470132_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 a26b7f92-262c-43e9-9648-98b95b68600b 5192bf0a203d483a4d68fcfd8b209faa {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.MethArray.Green.T C3N-04609 LSCC Methylation_Array tumor CPT0261340006 204372030164_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2e9864a4-1838-4099-93ed-7dbe8f1cfbf0 520324062d73e260e3923d820362f31d {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.MethArray.Red.A C3N-04609 LSCC Methylation_Array tissue_normal CPT0261370005 204367470132_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 3f643a8c-4905-48c0-822f-ac3acd937ea2 e458de527ff8e41155153b8ca1a9d210 {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.MethArray.Red.T C3N-04609 LSCC Methylation_Array tumor CPT0261340006 204372030164_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 07254326-2a17-4d1b-b8f7-ae256bcdb3a7 f806b876dde91b05667a8160dd431816 {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.miRNA-Seq.A.hg38 C3N-04609 LSCC miRNA-Seq tissue_normal CPT0261370008 235a0352-a0b2-456e-95f2-7390ddb349d4_mirnaseq_gdc_realn.bam 247973059 BAM harmonized CPTAC3 9fee42d0-3240-4c38-af8b-c8b1c26f5eca 005ad79879245b35c2edd676cb98bf99 {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.miRNA-Seq.S20_L007_R1.T C3N-04609 LSCC miRNA-Seq tumor CPT0261340013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGGCC_S20_L007_R1_001.unaln.bam 248674397 BAM S20_L007_R1 submitted_unaligned CPTAC3 71eec4ad-17eb-4c09-8273-6a55a9e597da 3cc8a3ce2bc51ac887b3ee6afbca93b4 {"aliquot_tag": "ALQ_a52fc1ed", "sample": "S20", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.miRNA-Seq.S3_L007_R1.A C3N-04609 LSCC miRNA-Seq tissue_normal CPT0261370008 200513_UNC31-K00269_0278_BHH7Y7BBXY_AGTCAA_S3_L007_R1_001.unaln.bam 222568926 BAM S3_L007_R1 submitted_unaligned CPTAC3 2269b426-f76d-4c4b-92c1-7d4885ed1619 490ca374bbdc4d3c4f3f00f84db2db62 {"aliquot_tag": "ALQ_6c4653f4", "sample": "S3", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.miRNA-Seq.T.hg38 C3N-04609 LSCC miRNA-Seq tumor CPT0261340013 06cea557-a625-4731-8a18-b619aa9934ee_mirnaseq_gdc_realn.bam 284213287 BAM harmonized CPTAC3 3bc28b79-e066-4b4c-9a90-640e29cfba46 81fef8f04593a5310e1931ab7277a10f {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.RNA-Seq.chimeric.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.chimeric.gdc_realn.bam 100244173 BAM chimeric harmonized CPTAC3 e9095320-324f-4cd1-a631-4f2bd4cde944 4250e82f8114b1954ad6d3b95825a31b {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.RNA-Seq.chimeric.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.chimeric.gdc_realn.bam 145338376 BAM chimeric harmonized CPTAC3 b35ab5bf-8c69-48a8-91f9-b42b3215d62c e60846dca205293aa09a355bc9596c92 {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.RNA-Seq.genomic.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.genomic.gdc_realn.bam 7696537226 BAM genomic harmonized CPTAC3 57df5867-4a6f-47eb-9217-bb442795c9c4 cc2fe293ecac3dbb12f0ca8d4ef4ccc4 {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.RNA-Seq.genomic.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.genomic.gdc_realn.bam 7333750961 BAM genomic harmonized CPTAC3 7d990998-e227-40e3-99d6-0a29d26423da 16c7465a1bb794f21e441926e33ac030 {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.RNA-Seq.S14_L004_R1.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R1_001.fastq.gz 3732982453 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 ce4b672d-2986-4efd-8b6d-86426216b967 6bf08b364fc611a2bdb675b0c05fa2d0 {"aliquot_tag": "ALQ_6c4653f4", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.RNA-Seq.S14_L004_R2.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R2_001.fastq.gz 4210861214 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 f5303b74-aadb-4250-b358-5c3d17ff55d6 3d9237e82a479d1b8d3e0dd53fd5f861 {"aliquot_tag": "ALQ_6c4653f4", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.RNA-Seq.S18_L005_R1.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R1_001.fastq.gz 3478636597 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 b52cfbeb-ce98-48a7-846c-1a2ff673ab54 6b0162b209f91ac0d79cb9186062a5b3 {"aliquot_tag": "ALQ_a52fc1ed", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.RNA-Seq.S18_L005_R2.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R2_001.fastq.gz 3987460969 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 7f1a4de6-bc03-4692-a9f8-34013cafe9c4 6ba9759f70b3e4c02b4e329e6fadef84 {"aliquot_tag": "ALQ_a52fc1ed", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.RNA-Seq.transcriptome.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.transcriptome.gdc_realn.bam 9850449084 BAM transcriptome harmonized CPTAC3 873a48a5-b8bb-47e5-abd7-c619e3322eec 93700f8248e0ed11a90bb6d666f1f17a {"aliquot_tag": "ALQ_6c4653f4", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.RNA-Seq.transcriptome.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.transcriptome.gdc_realn.bam 10487858821 BAM transcriptome harmonized CPTAC3 d62e666d-d736-4e51-9b60-8327272333a6 63e097771729b64ce6482d0f8644f334 {"aliquot_tag": "ALQ_a52fc1ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.WGS.N C3N-04609 LSCC WGS blood_normal CPT0261460002 CPT0261460002.WholeGenome.RP-2158.bam 20516376113 BAM submitted_aligned CPTAC3 99a29d84-e542-46e3-9b4c-7fad31274873 b8688214ae6c19834cb8cc2644105e15 {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04609.WGS.N.hg38 C3N-04609 LSCC WGS blood_normal CPT0261460002 d2aedfb1-8888-46fa-b2a6-ed9137cf7761_wgs_gdc_realn.bam 61426023203 BAM harmonized CPTAC3 ec37fbbc-6add-431e-813d-367d21742608 e1e5dd18467951818360e477849d5b6e {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04609.WGS.T C3N-04609 LSCC WGS tumor CPT0261340006 CPT0261340006.WholeGenome.RP-2158.bam 26715338323 BAM submitted_aligned CPTAC3 1a065183-b1a7-4217-9868-8d9609052dcc c9f774ef88c4570b1a8b2f9f986fbfdc {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.WGS.T.hg38 C3N-04609 LSCC WGS tumor CPT0261340006 daf0041e-8cbb-47d7-af99-edc911331d31_wgs_gdc_realn.bam 81346735687 BAM harmonized CPTAC3 1c4ef9fd-f19e-4a53-83e8-b1f50688373d 0c8f30320fa21666f218a1e06a857f44 {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.WXS.A C3N-04609 LSCC WXS tissue_normal CPT0261370005 CPT0261370005.WholeExome.RP-1303.bam 26723176789 BAM submitted_aligned CPTAC3 4084b28e-b032-4b6e-bc90-d4cdf25efdb6 27c799c43db0c70180ead0c7f7951255 {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.WXS.A.hg38 C3N-04609 LSCC WXS tissue_normal CPT0261370005 ceeb7e4c-5c16-48ee-81a5-6798b15370d3_wxs_gdc_realn.bam 37032542799 BAM harmonized CPTAC3 69664a42-282d-45db-a4f6-942c6b73affb e3aa0a86df069e6a728b5b4af5eb3264 {"aliquot_tag": "ALQ_12f72f49", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04609.WXS.N C3N-04609 LSCC WXS blood_normal CPT0261460002 CPT0261460002.WholeExome.RP-1303.bam 22877534719 BAM submitted_aligned CPTAC3 bd043c7a-9ebb-411b-ba1a-5a8a0033eb01 c373851ceafb0e63cf0a9d0096747d64 {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04609.WXS.N.hg38 C3N-04609 LSCC WXS blood_normal CPT0261460002 d2aedfb1-8888-46fa-b2a6-ed9137cf7761_wxs_gdc_realn.bam 30934605434 BAM harmonized CPTAC3 142d485d-1d0c-455c-bbb8-d3aaabcf595d f033876aaac891637d84217d69cf825a {"aliquot_tag": "ALQ_acf6a3e2", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04609.WXS.T C3N-04609 LSCC WXS tumor CPT0261340006 CPT0261340006.WholeExome.RP-1303.bam 46586664015 BAM submitted_aligned CPTAC3 4df22dd4-2a05-42d5-b290-01e3b0f2e8f0 a67642c31abd1eda626ac96b2b8cad95 {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04609.WXS.T.hg38 C3N-04609 LSCC WXS tumor CPT0261340006 daf0041e-8cbb-47d7-af99-edc911331d31_wxs_gdc_realn.bam 63361182951 BAM harmonized CPTAC3 3ff3963c-6fb9-4cd5-bb1c-29d8c2ceeedc 0551e1d9ad0271856753113a9ea19b2f {"aliquot_tag": "ALQ_cc5e0423", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04611.MethArray.Green.A C3N-04611 HNSCC Methylation_Array tissue_normal CPT0261550006 203273200110_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 c9648bdd-17de-41a2-8bc7-ead15966e086 f90e35c0844adb1e85bc5c467b1c15b4 {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.MethArray.Green.T C3N-04611 HNSCC Methylation_Array tumor CPT0261520006 203271750083_R06C01_Grn.idat 13676206 IDAT Green NA CPTAC3 31bf25a8-c0dd-4425-acda-c9ff72ec3647 fc736b7d631555ccd733ce190b7725e1 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.MethArray.Red.A C3N-04611 HNSCC Methylation_Array tissue_normal CPT0261550006 203273200110_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 c6ccd970-be33-4449-bf68-51dba9f4e90e 17d660bc04af9ef835ae654690eeb943 {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.MethArray.Red.T C3N-04611 HNSCC Methylation_Array tumor CPT0261520006 203271750083_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 23f081e0-04c7-42d0-8608-1d1d32a572eb 9bd4fe8510c1cff95bde56a487fbb83e {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.miRNA-Seq.A.hg38 C3N-04611 HNSCC miRNA-Seq tissue_normal CPT0261550009 781988bb-c233-475a-83fc-5514284ddeb8_mirnaseq_gdc_realn.bam 360209775 BAM harmonized CPTAC3 adf0efbf-692a-4d73-b30e-245ed29dec24 9ab55fe87dd22739277de1d999d9f3dc {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.miRNA-Seq.S41_L006_R1.T C3N-04611 HNSCC miRNA-Seq tumor CPT0261520009 190228_UNC32-K00270_0151_AHYLY3BBXX_GACGAC_S41_L006_R1_001.unaln.bam 248010262 BAM S41_L006_R1 submitted_unaligned CPTAC3 2ca07f9e-fb73-46a2-a7cb-736c4ec6b8f2 389a82c336c7b69c7ecd9f32af5ab814 {"aliquot_tag": "ALQ_5f80f0f", "sample": "S41", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.miRNA-Seq.S4_L007_R1.A C3N-04611 HNSCC miRNA-Seq tissue_normal CPT0261550009 190228_UNC32-K00270_0151_AHYLY3BBXX_TGACCA_S4_L007_R1_001.unaln.bam 320765190 BAM S4_L007_R1 submitted_unaligned CPTAC3 b2a136aa-1e20-4384-8781-b64f93a215f4 283871a93a52efe46bc3db261e3b03ab {"aliquot_tag": "ALQ_b7d8d31f", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.miRNA-Seq.T.hg38 C3N-04611 HNSCC miRNA-Seq tumor CPT0261520009 6c5b146f-e3bf-426e-9dac-3a9417aea65c_mirnaseq_gdc_realn.bam 276042224 BAM harmonized CPTAC3 4b6da654-a4ff-4966-aad4-3d6ed09bc85e 6af838857a4605525ac0267ba21075b0 {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.chimeric.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.chimeric.gdc_realn.bam 26289525 BAM chimeric harmonized CPTAC3 36778899-38ab-407e-b946-5031f9015e6d 5e27e119d1c9f626a76ddddf75459d78 {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.chimeric.gdc_realn.bam 32126651 BAM chimeric harmonized CPTAC3 a41eb75a-7143-4a7b-afca-f4206bcec6c2 8ecbfdba3043818b824c16916b43486e {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.chimeric.gdc_realn.bam 181488207 BAM chimeric harmonized CPTAC3 97e13161-f66f-4e21-8bb2-41eeacd4838d 7bde389272e903c6a7bce25366a65265 {"aliquot_tag": "ALQ_e7b810bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.chimeric.gdc_realn.bam 145200515 BAM chimeric harmonized CPTAC3 5cae3303-9e2a-48df-b757-b99136ff8e30 a00e7adaa7f280bd71f0f5fc3dd6f8ef {"aliquot_tag": "ALQ_9b67190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.genomic.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.genomic.gdc_realn.bam 7216776524 BAM genomic harmonized CPTAC3 9b370ce7-5c17-4274-8636-4a2cf2007ab4 e360d63a2c1d82e746805e7b7fb30f27 {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.genomic.gdc_realn.bam 8449222301 BAM genomic harmonized CPTAC3 bc536368-0520-4089-a4cb-ad5f9afd5093 03bd0208df4944162e4418d426759447 {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.genomic.gdc_realn.bam 11351270900 BAM genomic harmonized CPTAC3 330a6b8b-4f3c-4607-a958-4c0fadd2edf5 1e3053ebe04eba10a88f958d71760ab9 {"aliquot_tag": "ALQ_e7b810bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.genomic.gdc_realn.bam 7551235008 BAM genomic harmonized CPTAC3 680f8b66-54bf-4649-97dd-55ba2dcfb17d 1935865b022e7b3ce3b67e9be64244e3 {"aliquot_tag": "ALQ_9b67190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.S19_L005_R1.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R1_001.fastq.gz 3953220535 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 f2c5478b-00ef-43ec-918c-5900238c2537 2a1fb30b226db4b83f463047ee90dc2e {"aliquot_tag": "ALQ_5f80f0f", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.S19_L005_R2.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R2_001.fastq.gz 4420408338 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 85606e14-df05-44d8-8a65-c208cfb10b9a 8495c3024955313141a6e2701855ecc5 {"aliquot_tag": "ALQ_5f80f0f", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.S1_R1.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R1_001.fastq.gz 5609407969 FASTQ S1_R1 submitted_unaligned CPTAC3 bf0a1f26-a232-4ec6-9ac7-199bdf589b02 90fabcd9748accafae93b1c3fc25c51d {"aliquot_tag": "ALQ_e7b810bc", "sample": "S1", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.S1_R2.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R2_001.fastq.gz 5811772273 FASTQ S1_R2 submitted_unaligned CPTAC3 ddd5fbf3-0e37-413c-863f-04bc8c661076 aca0a0a60cd9eb75aa705be4f352de5f {"aliquot_tag": "ALQ_e7b810bc", "sample": "S1", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.S43_L008_R1.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R1_001.fastq.gz 3576223355 FASTQ S43_L008_R1 submitted_unaligned CPTAC3 456b4e27-5d07-42a6-b098-81361e72d703 d4b851825866fa52550236e1a2809cd5 {"aliquot_tag": "ALQ_b7d8d31f", "sample": "S43", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.RNA-Seq.S43_L008_R2.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R2_001.fastq.gz 3868045676 FASTQ S43_L008_R2 submitted_unaligned CPTAC3 76f05057-3a1b-4919-af2b-b334855a4e4e b515a61038ab8b5369386a0f3d06452d {"aliquot_tag": "ALQ_b7d8d31f", "sample": "S43", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.RNA-Seq.S95_R1.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R1_001.fastq.gz 4996674187 FASTQ S95_R1 submitted_unaligned CPTAC3 3fdce399-670d-4a00-bb99-8c56f913fbb3 82109447645354f2561255e66bb2f953 {"aliquot_tag": "ALQ_9b67190", "sample": "S95", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.S95_R2.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R2_001.fastq.gz 5114594767 FASTQ S95_R2 submitted_unaligned CPTAC3 d64294f5-f9cd-4f2a-a46b-a158f31b0303 592372952fff018fd661afbac3d08cad {"aliquot_tag": "ALQ_9b67190", "sample": "S95", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.transcriptome.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.transcriptome.gdc_realn.bam 9201801952 BAM transcriptome harmonized CPTAC3 7475b49a-d767-4a4e-b311-d1a1b80b1753 58db904031e1895967aceb80be601118 {"aliquot_tag": "ALQ_b7d8d31f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.transcriptome.gdc_realn.bam 11321138154 BAM transcriptome harmonized CPTAC3 6b34cdb5-6df2-466b-bd27-415d65c8151d b460efc49de4c37ca3222c615293bddb {"aliquot_tag": "ALQ_5f80f0f", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.transcriptome.gdc_realn.bam 3844250138 BAM transcriptome harmonized CPTAC3 fd71036a-6f45-4cca-a142-1e98dad699e1 2ad418312d3d8d99170763db84d43614 {"aliquot_tag": "ALQ_e7b810bc", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.transcriptome.gdc_realn.bam 2992092348 BAM transcriptome harmonized CPTAC3 8fea22ef-765a-4b7b-82a9-1a895933ad49 2655b6e9538368e792ff3a772c1c20b0 {"aliquot_tag": "ALQ_9b67190", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.WGS.N C3N-04611 HNSCC WGS blood_normal CPT0261640002 CPT0261640002.WholeGenome.RP-1303.bam 69388797335 BAM submitted_aligned CPTAC3 30907803-55ef-4277-982c-4d596fdd57db 1061f1030c64074686cbf23e354a7a81 {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04611.WGS.N.hg38 C3N-04611 HNSCC WGS blood_normal CPT0261640002 dda4c83b-732e-4465-9f7d-f790f7328218_wgs_gdc_realn.bam 100987767759 BAM harmonized CPTAC3 1df12409-b1af-4c1a-9fe8-2a494f27c4ab 8b87d7d14c83be0d5a03676c047f401f {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04611.WGS.T C3N-04611 HNSCC WGS tumor CPT0261520006 CPT0261520006.WholeGenome.RP-1303.bam 81497922288 BAM submitted_aligned CPTAC3 292b35dd-9326-4bc4-8bda-387fafb9874f b22a7d3c42fdc05e6f83aee3a74dffe5 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.WGS.T.hg38 C3N-04611 HNSCC WGS tumor CPT0261520006 6d4a2a29-c227-4878-8bea-90a054f4950b_wgs_gdc_realn.bam 117637448265 BAM harmonized CPTAC3 a7c396ad-3772-4ade-a102-c4ccb163f59e 45e99ad5316fb04462f5b23fbd520c1b {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.WXS.A C3N-04611 HNSCC WXS tissue_normal CPT0261550006 CPT0261550006.WholeExome.RP-1303.bam 20936067324 BAM submitted_aligned CPTAC3 cb40bedb-2174-4cb3-8f39-a09cdfc34ac9 6893fc917f9d8f09d2c0a7dc4fb5e1ae {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.WXS.A.hg38 C3N-04611 HNSCC WXS tissue_normal CPT0261550006 f1c01f27-2123-48da-bef3-67058cb28608_wxs_gdc_realn.bam 28511351625 BAM harmonized CPTAC3 aa079650-efb8-40dc-872b-de93253040b1 f6cd343b7641f298736decda979d967b {"aliquot_tag": "ALQ_2767ce8e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-04611.WXS.N C3N-04611 HNSCC WXS blood_normal CPT0261640002 CPT0261640002.WholeExome.RP-1303.bam 32526004161 BAM submitted_aligned CPTAC3 b83b7a07-57ba-43b8-9558-12196e6dae1b 5dcfc7adeb9abe9a4bb4470e0e43e6d9 {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04611.WXS.N.hg38 C3N-04611 HNSCC WXS blood_normal CPT0261640002 dda4c83b-732e-4465-9f7d-f790f7328218_wxs_gdc_realn.bam 44449868362 BAM harmonized CPTAC3 69532970-7481-4510-b2fb-e40068fe9423 5a49873bfd5fa95845661a240e84d7ee {"aliquot_tag": "ALQ_9bfe5189", "gdc_sample_type": "Blood Derived Normal", "state": "released"} +C3N-04611.WXS.T C3N-04611 HNSCC WXS tumor CPT0261520006 CPT0261520006.WholeExome.RP-1303.bam 24497453964 BAM submitted_aligned CPTAC3 24dfe2ab-ebad-4690-adc1-54e5c4ed48c1 26848fd19a7f2072a175b0f6466c9880 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04611.WXS.T.hg38 C3N-04611 HNSCC WXS tumor CPT0261520006 6d4a2a29-c227-4878-8bea-90a054f4950b_wxs_gdc_realn.bam 32948781341 BAM harmonized CPTAC3 35f0b6cb-aa7f-4451-a0e3-7066a248c27e 0752a30202fe2b025af17e24eb9c71c3 {"aliquot_tag": "ALQ_9547129e", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04660.MethArray.Green.T C3N-04660 LSCC Methylation_Array tumor CPT0333120007 204930640120_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 27955d7c-dd9f-46cf-9438-2b50c6061889 0eeb54cd07f15082591f108c057de022 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.MethArray.Red.T C3N-04660 LSCC Methylation_Array tumor CPT0333120007 204930640120_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 cef8d95b-cc68-49a0-9cc9-1ba8b36fdff2 dc92cee698ee9286fffd9e1dcec6e573 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.miRNA-Seq.A.hg38 C3N-04660 LSCC miRNA-Seq tissue_normal CPT0333140006 715cb626-024c-4085-b91d-5c9a60cbe8e8_mirnaseq_gdc_realn.bam 285786722 BAM harmonized CPTAC3 aa45b1be-5599-408b-8268-187f207d072f 66b7990154361c94da17bbaa2753670c {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04660.miRNA-Seq.S16_L006_R1.A C3N-04660 LSCC miRNA-Seq tissue_normal CPT0333140006 201209_UNC32-K00270_0265_AHJ55WBBXY_TACAGC_S16_L006_R1_001.unaln.bam 260476728 BAM S16_L006_R1 submitted_unaligned CPTAC3 88b5f70b-367a-4f1c-a4f1-b93d124a7a53 ba4f96f8dee941dcd49495a6cfda59d3 {"aliquot_tag": "ALQ_4992ae26", "sample": "S16", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04660.miRNA-Seq.S36_L007_R1.T C3N-04660 LSCC miRNA-Seq tumor CPT0333120010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGGCC_S36_L007_R1_001.unaln.bam 218098122 BAM S36_L007_R1 submitted_unaligned CPTAC3 de4eaf61-8ff7-41a2-b6fb-3e3979ab2f01 68d56134bd3c76894af21938c8635115 {"aliquot_tag": "ALQ_36aacff2", "sample": "S36", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.miRNA-Seq.T.hg38 C3N-04660 LSCC miRNA-Seq tumor CPT0333120010 2f49ffe2-3e11-40e9-882d-7e372b0da4e8_mirnaseq_gdc_realn.bam 241041016 BAM harmonized CPTAC3 203cdb5f-eec9-4844-92f3-3126ebb46989 299c4861277334b1d68e1d73452652b2 {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.RNA-Seq.chimeric.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.chimeric.gdc_realn.bam 394372773 BAM chimeric harmonized CPTAC3 47b0d964-1ef5-413a-b91b-88a368b9dbc9 4690de66967f24159bb973738a91e4a2 {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04660.RNA-Seq.chimeric.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.chimeric.gdc_realn.bam 416831460 BAM chimeric harmonized CPTAC3 ccb0ce93-c767-4dda-8d2b-3752f74c68f8 de01392e4d9acc2505dc1dccc44134d8 {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.RNA-Seq.genomic.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.genomic.gdc_realn.bam 7715664213 BAM genomic harmonized CPTAC3 bc778135-4f78-48fc-b43e-0d2c6c32d44b d663a59264230e8fc0efb1656c903f53 {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04660.RNA-Seq.genomic.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.genomic.gdc_realn.bam 7125312238 BAM genomic harmonized CPTAC3 73abdfa9-1285-4e1e-8661-997380d9e430 08477ba222629e89f86c12893ca6a5fc {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.RNA-Seq.S23_L006_R1.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R1_001.fastq.gz 3491128050 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 f040cd6f-bca4-4219-90ce-79bb548ff258 95c536a656e0f8bc39014ff12a0ab182 {"aliquot_tag": "ALQ_36aacff2", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.RNA-Seq.S23_L006_R2.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R2_001.fastq.gz 3876810533 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 1ffd9fe7-3bef-45ce-a22d-76d05d3429a6 d29a67badd82392e680792d342f91748 {"aliquot_tag": "ALQ_36aacff2", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.RNA-Seq.S5_L002_R1.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R1_001.fastq.gz 3909228727 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 f2c7e58e-88ab-4532-a94c-c6df1b052c8e 3b209090e61165ca225e4d898ded19d6 {"aliquot_tag": "ALQ_4992ae26", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04660.RNA-Seq.S5_L002_R2.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R2_001.fastq.gz 4232579809 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 d1ebe51b-7462-45de-af90-e037d6289775 df00fdd9d9a6ca33f8f1dfd90aa9aac9 {"aliquot_tag": "ALQ_4992ae26", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04660.RNA-Seq.transcriptome.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.transcriptome.gdc_realn.bam 9344688192 BAM transcriptome harmonized CPTAC3 c514c463-8b19-439b-9f92-7821a1f11269 1e8eb03bff7486584d81ea8d7b41fc2e {"aliquot_tag": "ALQ_4992ae26", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04660.RNA-Seq.transcriptome.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.transcriptome.gdc_realn.bam 10508493121 BAM transcriptome harmonized CPTAC3 c25c3fc4-d3b0-4c3f-abdd-f8e47f2ab67f 36a1bfa0168270d2b301586f4e90850d {"aliquot_tag": "ALQ_36aacff2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.WGS.N C3N-04660 LSCC WGS blood_normal CPT0333210002 CPT0333210002.WholeGenome.RP-2158.bam 23692882633 BAM submitted_aligned CPTAC3 702de41c-f45c-4111-bad1-03264dd01574 e0dce14acb2ece32b622500e04cfd275 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04660.WGS.N.hg38 C3N-04660 LSCC WGS blood_normal CPT0333210002 b5493d9b-8080-415f-bc7d-3a19c9aa7685_wgs_gdc_realn.bam 69250956663 BAM harmonized CPTAC3 719e10b8-ca89-4b4b-af1e-abc64649587d 8516be70df3c0319e535f643f875b085 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04660.WGS.T C3N-04660 LSCC WGS tumor CPT0333120007 CPT0333120007.WholeGenome.RP-2158.bam 24834974591 BAM submitted_aligned CPTAC3 a8ef9313-a212-407a-a2a4-ef6d38afbda3 fda47cdece3bca876455334e8a35083e {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.WGS.T.hg38 C3N-04660 LSCC WGS tumor CPT0333120007 d70a67ad-eeb8-4799-9145-f78099cba111_wgs_gdc_realn.bam 76155985980 BAM harmonized CPTAC3 f2c57f08-2f01-4553-959b-d4c3a4b4dfc6 11a529da808a87702f7c5aea60e56b13 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.WXS.N C3N-04660 LSCC WXS blood_normal CPT0333210002 CPT0333210002.WholeExome.RP-1303.bam 25664685884 BAM submitted_aligned CPTAC3 d3ec620f-eb84-4885-98fc-935460498cff af4e1c223334c6497109b934e3fc6bf3 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04660.WXS.N.hg38 C3N-04660 LSCC WXS blood_normal CPT0333210002 b5493d9b-8080-415f-bc7d-3a19c9aa7685_wxs_gdc_realn.bam 34084255624 BAM harmonized CPTAC3 0e3dca7d-b14b-4a3a-a9cd-83e0758fdea6 7cfbeba92ee331408cf592c883a73391 {"aliquot_tag": "ALQ_8b97e1", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04660.WXS.T C3N-04660 LSCC WXS tumor CPT0333120007 CPT0333120007.WholeExome.RP-1303.bam 38570652273 BAM submitted_aligned CPTAC3 e5fb9fac-cb74-46c0-b33f-c532c79635d0 944587b3b5e90a10f1777583d075c726 {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04660.WXS.T.hg38 C3N-04660 LSCC WXS tumor CPT0333120007 d70a67ad-eeb8-4799-9145-f78099cba111_wxs_gdc_realn.bam 54457425648 BAM harmonized CPTAC3 84dd3683-e4d3-4f0e-84f0-b19c7898db2c 64296d1547fad549b4d3382abfcaf91f {"aliquot_tag": "ALQ_b1d56b10", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04662.MethArray.Green.A C3N-04662 LSCC Methylation_Array tissue_normal CPT0333340006 204930630084_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e9530a6b-2505-4ded-be2e-0c0ebc40bab4 57722d7aed4e6ed9d3aed0b9353aef62 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.MethArray.Green.T C3N-04662 LSCC Methylation_Array tumor CPT0333320007 204930630082_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 79850363-7624-4c06-b92c-b69f873c1324 3cea56a25677ce947b3e1b7d7d301f98 {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.MethArray.Red.A C3N-04662 LSCC Methylation_Array tissue_normal CPT0333340006 204930630084_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 5dcf9c97-8bb0-4a81-a648-983c62c21ac4 bde1e02745052bcc768884fa0aca3d37 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.MethArray.Red.T C3N-04662 LSCC Methylation_Array tumor CPT0333320007 204930630082_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 a82a094b-e152-4f6f-8be5-df9c38161661 eaaea376837682228869c3d5cac108e3 {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.miRNA-Seq.A.hg38 C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 b44ac144-a0ab-458c-9b23-90e9115cc7be_mirnaseq_gdc_realn.bam 373857070 BAM harmonized CPTAC3 444433b2-76cb-4492-94cd-0f52eb83d84d acb087f1f1c76ad7c8618592071c3409 {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.miRNA-Seq.S17_L006_R1.A C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 201209_UNC32-K00270_0265_AHJ55WBBXY_TATAAT_S17_L006_R1_001.unaln.bam 347846414 BAM S17_L006_R1 submitted_unaligned CPTAC3 8bc072f2-b507-4b35-8c52-1d329d6cac8b a570b39431a5e2cd7e688b02796d9aa3 {"aliquot_tag": "ALQ_94e512bc", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.miRNA-Seq.S37_L007_R1.T C3N-04662 LSCC miRNA-Seq tumor CPT0333320010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTTTCG_S37_L007_R1_001.unaln.bam 280025904 BAM S37_L007_R1 submitted_unaligned CPTAC3 4ba3830c-642a-46f5-bdac-b0bca79f15f7 72fa1578a807859c05eff650aea233ec {"aliquot_tag": "ALQ_7b626ef9", "sample": "S37", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.miRNA-Seq.T.hg38 C3N-04662 LSCC miRNA-Seq tumor CPT0333320010 30b8806e-7738-4358-95eb-7233e1b43af6_mirnaseq_gdc_realn.bam 306286432 BAM harmonized CPTAC3 4575f552-e653-493b-b327-f568fe3ca552 08f8bfb1c798cb58676cefc2915b53aa {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.RNA-Seq.chimeric.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.chimeric.gdc_realn.bam 194255095 BAM chimeric harmonized CPTAC3 81a8b067-3bfc-4443-9689-e2d547e6c8e4 e202f371944d7398c866f971d594f80f {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.RNA-Seq.chimeric.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.chimeric.gdc_realn.bam 375735046 BAM chimeric harmonized CPTAC3 823d5bed-89b2-478b-a663-c9621bf37f66 7688ce23a4bc3ec1b1d5e86c3265ad31 {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.RNA-Seq.genomic.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.genomic.gdc_realn.bam 6375840251 BAM genomic harmonized CPTAC3 b24dfc08-1438-4605-9867-2c3ef7d0ef2a 46e0850cf456fbf8835b14e45049d769 {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.RNA-Seq.genomic.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.genomic.gdc_realn.bam 8177926663 BAM genomic harmonized CPTAC3 cab38c17-a3f9-4412-83aa-7a1fb4fbbf73 7c08c043fca21487e2d70f499f0c24ab {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.RNA-Seq.S20_L005_R1.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4078146955 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 b0910594-ba39-4b73-9c92-87889032b3df 9f0a777b86beabfc81b55a2b5b15f100 {"aliquot_tag": "ALQ_7b626ef9", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.RNA-Seq.S20_L005_R2.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4470105933 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 18d596f5-5d39-4ae3-9538-45967468203f 0c32737f44323b86dceffff3efbdbf54 {"aliquot_tag": "ALQ_7b626ef9", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.RNA-Seq.S7_L002_R1.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R1_001.fastq.gz 2954081817 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 9d3d2907-4b0b-420d-bbaa-33de825bd2d8 4a84e8d1cdea12f929bcfe60d3354e1c {"aliquot_tag": "ALQ_94e512bc", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.RNA-Seq.S7_L002_R2.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R2_001.fastq.gz 3225243949 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 cf2fb946-7a89-4be7-bcf1-3dbefd88c208 37822a8be538071c3dc8c4047ae26f6f {"aliquot_tag": "ALQ_94e512bc", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.RNA-Seq.transcriptome.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.transcriptome.gdc_realn.bam 8668220822 BAM transcriptome harmonized CPTAC3 26734ac2-b2b1-46ba-93ab-38af64739fd9 ddcd89488460fcfd49e5d8f8d50da9f2 {"aliquot_tag": "ALQ_94e512bc", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.RNA-Seq.transcriptome.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.transcriptome.gdc_realn.bam 11535902333 BAM transcriptome harmonized CPTAC3 b4ccaffb-1adb-4c9e-9b99-58416030c1e1 a454ce8db2d669b1eb23dd0d9b21d70d {"aliquot_tag": "ALQ_7b626ef9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.WGS.N C3N-04662 LSCC WGS blood_normal CPT0333410002 CPT0333410002.WholeGenome.RP-2158.bam 26911219456 BAM submitted_aligned CPTAC3 54e8f619-de40-4efc-95bb-9de7a2f02084 311500a9c6cb2c7bc448d0603c361e47 {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04662.WGS.N.hg38 C3N-04662 LSCC WGS blood_normal CPT0333410002 b3f467bd-e6f5-4a05-830e-efff563e1830_wgs_gdc_realn.bam 80842847804 BAM harmonized CPTAC3 f326c8cb-0016-46ed-942e-7cb72363307b e744761fe355515947eee58606fec0fb {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04662.WGS.T C3N-04662 LSCC WGS tumor CPT0333320007 CPT0333320007.WholeGenome.RP-2158.bam 26925350380 BAM submitted_aligned CPTAC3 7293efa6-b4c4-4660-a400-79126a9f9892 f3cd1fe56e4224dc173f2d364e5b373f {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.WGS.T.hg38 C3N-04662 LSCC WGS tumor CPT0333320007 05bbfee8-76ac-4003-9b21-d8c56580a097_wgs_gdc_realn.bam 83592350260 BAM harmonized CPTAC3 c3d59670-9c58-4bef-838e-1da469389883 c74301e9c837d5f4f629ae042df4cdac {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.WXS.A C3N-04662 LSCC WXS tissue_normal CPT0333340006 CPT0333340006.WholeExome.RP-1303.bam 20135077034 BAM submitted_aligned CPTAC3 64f68efa-1415-4a46-8409-7317be80478f 59b80255abd1ab699b9318b370323755 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04662.WXS.A.hg38 C3N-04662 LSCC WXS tissue_normal CPT0333340006 e8106a2c-19b6-4907-89ae-db47d17551ef_wxs_gdc_realn.bam 28222677161 BAM harmonized CPTAC3 3c18b325-ae25-4cb4-857d-ff19f1ef7859 f23721a03a59f33e5d121d8b824ca143 {"aliquot_tag": "ALQ_45a0f2d", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04662.WXS.N C3N-04662 LSCC WXS blood_normal CPT0333410002 CPT0333410002.WholeExome.RP-1303.bam 23127820874 BAM submitted_aligned CPTAC3 52c70757-e0fc-4d66-a16b-d2e343deeabe 786bb743583f6df5f826a6d80486a15e {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04662.WXS.N.hg38 C3N-04662 LSCC WXS blood_normal CPT0333410002 b3f467bd-e6f5-4a05-830e-efff563e1830_wxs_gdc_realn.bam 31861911526 BAM harmonized CPTAC3 6c44358e-51ab-4164-bf88-592a63b5959f 21d3a8b586d8de31a2bb3b039169ee9a {"aliquot_tag": "ALQ_d6d274fc", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04662.WXS.T C3N-04662 LSCC WXS tumor CPT0333320007 CPT0333320007.WholeExome.RP-1303.bam 21841404950 BAM submitted_aligned CPTAC3 eeeb20d0-fdb0-41bc-81e1-578860b3547d e1d78889e876ac79d28ba47f70b4582a {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04662.WXS.T.hg38 C3N-04662 LSCC WXS tumor CPT0333320007 05bbfee8-76ac-4003-9b21-d8c56580a097_wxs_gdc_realn.bam 30235122766 BAM harmonized CPTAC3 e65b0822-89c0-4f9b-a5df-104eedef99ec 5ac23d61fa46ad893c4d2ec9375cf30b {"aliquot_tag": "ALQ_fc1dca1b", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04665.MethArray.Green.A C3N-04665 LSCC Methylation_Array tissue_normal CPT0333540006 204930640051_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 5f55b2a0-47d3-46b7-813d-a9f1b8a2f62e 85b29c34f5013b9c4c1d1b1d31f8bd88 {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.MethArray.Green.T C3N-04665 LSCC Methylation_Array tumor CPT0333520007 204930630113_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 73732e90-9e74-42d0-b6e7-c6efc66a23bb 6fd259befc2dcb34699c1978025128ae {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.MethArray.Red.A C3N-04665 LSCC Methylation_Array tissue_normal CPT0333540006 204930640051_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 e538b2a0-fbd2-47e6-8e73-b008cf8b16a7 1ba835378007b3a53694ab394c5dfd70 {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.MethArray.Red.T C3N-04665 LSCC Methylation_Array tumor CPT0333520007 204930630113_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 06e37123-0b12-420e-81ec-40b7742ddf78 53e5b385c2ecd33ba562b2c4243b3978 {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.miRNA-Seq.A.hg38 C3N-04665 LSCC miRNA-Seq tissue_normal CPT0333540009 d75e5a5b-2475-4e92-8feb-e7f78b36afb6_mirnaseq_gdc_realn.bam 235057631 BAM harmonized CPTAC3 eb348191-33cf-4e1e-8df0-00e9130ae2f6 a194c6057f05ad604b5702ebbff29cd6 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.miRNA-Seq.S11_L006_R1.T C3N-04665 LSCC miRNA-Seq tumor CPT0333520010 201209_UNC32-K00270_0265_AHJ55WBBXY_CGTACG_S11_L006_R1_001.unaln.bam 304496074 BAM S11_L006_R1 submitted_unaligned CPTAC3 1980e0cd-8f60-43b9-9018-4307eefd41c5 ee69005ce83b9c76bbe077059577adb4 {"aliquot_tag": "ALQ_ad3b8de4", "sample": "S11", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.miRNA-Seq.S18_L007_R1.A C3N-04665 LSCC miRNA-Seq tissue_normal CPT0333540009 201209_UNC32-K00270_0265_AHJ55WBBXY_TCATTC_S18_L007_R1_001.unaln.bam 212886104 BAM S18_L007_R1 submitted_unaligned CPTAC3 e5b33b26-0938-42cb-bca4-48a6dd9cdbf0 6d27bd2519fe34b6d1e2ba6f1b4cdb60 {"aliquot_tag": "ALQ_42bcf1a1", "sample": "S18", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.miRNA-Seq.T.hg38 C3N-04665 LSCC miRNA-Seq tumor CPT0333520010 45d3b3a8-999f-4aba-8bdc-e6c37b7a3b82_mirnaseq_gdc_realn.bam 330656629 BAM harmonized CPTAC3 c571ff62-a952-4948-a60c-d9ab1ce8f677 342ececac2e5ac981525abe311ad12bc {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.RNA-Seq.chimeric.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.chimeric.gdc_realn.bam 255926204 BAM chimeric harmonized CPTAC3 635fba03-571f-4a75-891a-8053164e8045 7b42b2d47b3c999beecb8c2833ebb8f0 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.RNA-Seq.chimeric.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.chimeric.gdc_realn.bam 296969041 BAM chimeric harmonized CPTAC3 5706ec4c-275a-4fae-8158-67aa58f05306 23c39bc064a41065dd1a26131bce4e1a {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.RNA-Seq.genomic.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.genomic.gdc_realn.bam 7667196025 BAM genomic harmonized CPTAC3 e5c7c433-7a68-427e-9b78-dd6c1b0b544f abeeff3a48e536034cf9506180a959f0 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.RNA-Seq.genomic.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.genomic.gdc_realn.bam 6607150847 BAM genomic harmonized CPTAC3 06037433-3e3c-4a0c-8a87-79c109046628 9805b140296201c3db939b3cea3f2d10 {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.RNA-Seq.S1_L001_R1.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 3282015159 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 81481aff-e1d8-45ab-8755-17a61ff5915c 1cf9728e014a5efe458e0094a9e0325f {"aliquot_tag": "ALQ_ad3b8de4", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.RNA-Seq.S1_L001_R2.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3724470408 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 a2b99b44-8278-422c-addc-0cbab637d56d 28a78fa66492a53a138f310ef7a03685 {"aliquot_tag": "ALQ_ad3b8de4", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.RNA-Seq.S8_L002_R1.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R1_001.fastq.gz 3747629000 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 1db3ad6b-515d-4fc3-ab1b-ae3fabdcc438 dc197baca7f1b32f20d197ce286022f1 {"aliquot_tag": "ALQ_42bcf1a1", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.RNA-Seq.S8_L002_R2.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R2_001.fastq.gz 4142893674 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 f2a6a325-7b60-442e-8b7c-397a990da879 1ab9dc07bb33783a726d1db8ba9f8450 {"aliquot_tag": "ALQ_42bcf1a1", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.RNA-Seq.transcriptome.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.transcriptome.gdc_realn.bam 10272208561 BAM transcriptome harmonized CPTAC3 dd810f2f-b990-481d-9942-1ad45b5879ea b11d6cd4651e398a8aebe2544d97e3c5 {"aliquot_tag": "ALQ_42bcf1a1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.RNA-Seq.transcriptome.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.transcriptome.gdc_realn.bam 10066549910 BAM transcriptome harmonized CPTAC3 1aa37309-5578-4361-9d59-a0caeb4d612d 0a5371aedad1f33f780824212d4eb78f {"aliquot_tag": "ALQ_ad3b8de4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.WGS.N C3N-04665 LSCC WGS blood_normal CPT0333610002 CPT0333610002.WholeGenome.RP-2158.bam 25078124633 BAM submitted_aligned CPTAC3 7820c333-a662-4225-82e4-4b2e5df506bc 6b07674da95dc32561c228bb6cc0f8f8 {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04665.WGS.N.hg38 C3N-04665 LSCC WGS blood_normal CPT0333610002 dd6ddc5f-e564-4258-aca4-fc8114d10eba_wgs_gdc_realn.bam 73831542731 BAM harmonized CPTAC3 7e34ed9f-21f1-483e-b904-094a98a12227 b944a3d5ad9894269df63c2b965b6f04 {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04665.WGS.T C3N-04665 LSCC WGS tumor CPT0333520007 CPT0333520007.WholeGenome.RP-2158.bam 25184916025 BAM submitted_aligned CPTAC3 4792ea11-97a4-4ec9-a4eb-4d9ff70d9070 b00ce85e4028eee427dd042e1cf1378c {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.WGS.T.hg38 C3N-04665 LSCC WGS tumor CPT0333520007 43ba70f5-ce27-48f1-b6a4-939a60baadc5_wgs_gdc_realn.bam 75167909370 BAM harmonized CPTAC3 9e1090b9-d076-4d7c-af75-91d0c44c7660 70daa289a0cdaea9c1d3b9c6addd3782 {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.WXS.A C3N-04665 LSCC WXS tissue_normal CPT0333540006 CPT0333540006.WholeExome.RP-1303.bam 26094518596 BAM submitted_aligned CPTAC3 3159bf0c-cd3d-47e3-847d-350b790751e0 9a5ce87dfbc7a7950249f0fb9c874475 {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04665.WXS.A.hg38 C3N-04665 LSCC WXS tissue_normal CPT0333540006 eb806e59-c675-471a-b2cc-52f45840ccfb_wxs_gdc_realn.bam 36499380027 BAM harmonized CPTAC3 ecf85848-7546-46a5-a8ff-a3d66e10885e 92113d5062af88e39b336fbcc268973c {"aliquot_tag": "ALQ_d203ec30", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04665.WXS.N C3N-04665 LSCC WXS blood_normal CPT0333610002 CPT0333610002.WholeExome.RP-1303.bam 27513226676 BAM submitted_aligned CPTAC3 c92328db-2c81-4c74-8eaa-6a5ee2443b7d 961d916b285848a57441287da3942404 {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04665.WXS.N.hg38 C3N-04665 LSCC WXS blood_normal CPT0333610002 dd6ddc5f-e564-4258-aca4-fc8114d10eba_wxs_gdc_realn.bam 37906239530 BAM harmonized CPTAC3 7f8f5622-dcc6-4406-8ea2-cd32abb8d8f9 ed21b1cc3f217f7e2005a4df99fa32da {"aliquot_tag": "ALQ_9b1ad5f7", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04665.WXS.T C3N-04665 LSCC WXS tumor CPT0333520007 CPT0333520007.WholeExome.RP-1303.bam 18015736580 BAM submitted_aligned CPTAC3 b4f38e74-c4dd-4fa5-824b-ce01eec3e668 b25f116c86e2b56f069e1563295b1dda {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04665.WXS.T.hg38 C3N-04665 LSCC WXS tumor CPT0333520007 43ba70f5-ce27-48f1-b6a4-939a60baadc5_wxs_gdc_realn.bam 25071141506 BAM harmonized CPTAC3 effb605f-3420-40c4-90be-59698eacfdf3 0501ba89945d63aa79b769e991444c21 {"aliquot_tag": "ALQ_2a442906", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04673.MethArray.Green.T C3N-04673 LSCC Methylation_Array tumor CPT0293380006 204367490082_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 900f1d06-fc5a-4bc2-9fa9-40b3ef521999 89d15ec195f07ebbd3e609600b38a880 {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.MethArray.Red.T C3N-04673 LSCC Methylation_Array tumor CPT0293380006 204367490082_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 2aa33831-946e-4150-8559-f858ec460128 193a6688f7c743798f7bfa4d621906ea {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.miRNA-Seq.S8_L008_R1.T C3N-04673 LSCC miRNA-Seq tumor CPT0293380009 200224_UNC31-K00269_0267_AHC722BBXY_ACTTGA_S8_L008_R1_001.unaln.bam 215568975 BAM S8_L008_R1 submitted_unaligned CPTAC3 191d1827-ac93-4b43-8b01-2158ab10754e dfa2cf4e23d4b83034dc00ac57630798 {"aliquot_tag": "ALQ_d7aef736", "sample": "S8", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.miRNA-Seq.T.hg38 C3N-04673 LSCC miRNA-Seq tumor CPT0293380009 b714587e-749d-4596-9125-9b9986813c78_mirnaseq_gdc_realn.bam 247746274 BAM harmonized CPTAC3 e0bbd290-f0b8-45e3-89cc-24d8dd7e37f9 b3edff0bcb794db5a3d5b0047d6f41d6 {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.RNA-Seq.chimeric.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.chimeric.gdc_realn.bam 37786283 BAM chimeric harmonized CPTAC3 718eb02a-5181-4ffe-9000-ea6789ff3e10 e2200c9bb0361d75e17b6a902a582c44 {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.RNA-Seq.genomic.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.genomic.gdc_realn.bam 8732647620 BAM genomic harmonized CPTAC3 61714169-0609-4d03-b830-7c0321fbd479 1b3f3e484a4a350a7ea7d75587f209ec {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.RNA-Seq.S8_L002_R1.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 4368884839 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 6275c4d1-faa2-413a-b706-87387c66a97f b9d8c6a0dd3cd476c124a44236b9536c {"aliquot_tag": "ALQ_d7aef736", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.RNA-Seq.S8_L002_R2.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4697890786 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 78930632-295f-491b-b11a-b6464128ac8b c6ce4647ab18358e2e78480da45d590d {"aliquot_tag": "ALQ_d7aef736", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.RNA-Seq.transcriptome.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.transcriptome.gdc_realn.bam 13397484474 BAM transcriptome harmonized CPTAC3 d625d26e-6f37-41cc-bac7-6d0e11f03450 0a8f08ec3be8ded38991a666db7289bc {"aliquot_tag": "ALQ_d7aef736", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.WGS.N C3N-04673 LSCC WGS blood_normal CPT0293420002 CPT0293420002.WholeGenome.RP-2158.bam 25389182238 BAM submitted_aligned CPTAC3 de2b554f-e7c2-493a-819e-81233c40c120 02f4c4e38c678dcfb370eca8c35ece8e {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04673.WGS.N.hg38 C3N-04673 LSCC WGS blood_normal CPT0293420002 2146b731-6763-48fb-a3eb-b18ee89cfb73_wgs_gdc_realn.bam 74356314911 BAM harmonized CPTAC3 e54044d4-1010-4a9d-a0ae-fcc4b14d8126 2ebe242be637818d173ea615896d95f0 {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04673.WGS.T C3N-04673 LSCC WGS tumor CPT0293380006 CPT0293380006.WholeGenome.RP-2158.bam 26421022844 BAM submitted_aligned CPTAC3 1d027ec3-4a87-4b62-ad91-a760d6e8c94c e9fe1621062bf623a383ec6232054691 {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.WGS.T.hg38 C3N-04673 LSCC WGS tumor CPT0293380006 70db54d7-3201-4b69-bb47-74987b867428_wgs_gdc_realn.bam 77310697754 BAM harmonized CPTAC3 3aec8b92-8f04-4415-91a0-083e7d10a472 0f93fed350aa00fb17c6aa18d6450721 {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.WXS.N C3N-04673 LSCC WXS blood_normal CPT0293420002 CPT0293420002.WholeExome.RP-1303.bam 22649994212 BAM submitted_aligned CPTAC3 8d4d9609-468c-4b17-9c4d-ea76cfbd7f2f d2b278c40c09aa2131cc757720b0bab6 {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04673.WXS.N.hg38 C3N-04673 LSCC WXS blood_normal CPT0293420002 2146b731-6763-48fb-a3eb-b18ee89cfb73_wxs_gdc_realn.bam 30833374383 BAM harmonized CPTAC3 e8d4dca9-29c3-40ba-a3ce-2c8db9fda390 fd8d578e489bb4ddfa73e9697db8759e {"aliquot_tag": "ALQ_17c906a7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04673.WXS.T C3N-04673 LSCC WXS tumor CPT0293380006 CPT0293380006.WholeExome.RP-1303.bam 19448785135 BAM submitted_aligned CPTAC3 c996f860-b7a0-4b27-9cc7-c7494df3801b fcc420f97db5ce1e762c583690c6bdfa {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04673.WXS.T.hg38 C3N-04673 LSCC WXS tumor CPT0293380006 70db54d7-3201-4b69-bb47-74987b867428_wxs_gdc_realn.bam 26570342062 BAM harmonized CPTAC3 e321e2ce-0163-41ec-8630-71a002b3d669 cf21094c84bd379f3a68a0662608234f {"aliquot_tag": "ALQ_4711eaa7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.MethArray.Green.T C3N-04683 GBM Methylation_Array tumor CPT0293480006 204372030013_R02C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d483dd15-ca9e-4e49-8172-0335f7a7e064 a95f30665d4f21cf5175da9d71f58ef2 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.MethArray.Red.T C3N-04683 GBM Methylation_Array tumor CPT0293480006 204372030013_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 218867cf-8cd8-43a3-ab6c-6459ee4a842a 2fbba98dc38ec29189f346e85cda4fe4 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.miRNA-Seq.S45_L008_R1.T C3N-04683 GBM miRNA-Seq tumor CPT0293480009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCATTC_S45_L008_R1_001.unaln.bam 221888762 BAM S45_L008_R1 submitted_unaligned CPTAC3 4cb38538-f774-49dd-b1f9-6cd0752fc269 fe119ff3ceb7c359bc555044bbd9affa {"aliquot_tag": "ALQ_caabc78e", "sample": "S45", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.miRNA-Seq.T.hg38 C3N-04683 GBM miRNA-Seq tumor CPT0293480009 16109734-8b9d-4364-9c77-bacca3460cf4_mirnaseq_gdc_realn.bam 246174415 BAM harmonized CPTAC3 311a4ebe-7e72-4e55-a502-bd47c7a135a1 cae4d98340d45be7130a7ea7db450491 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.RNA-Seq.chimeric.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.chimeric.gdc_realn.bam 31617774 BAM chimeric harmonized CPTAC3 b31a92cf-9062-44d8-8751-8cc5cd81f972 d6ab1e329e19a6684f8db9853bb3bf04 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.RNA-Seq.genomic.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.genomic.gdc_realn.bam 7374346290 BAM genomic harmonized CPTAC3 4437ef66-d3f6-4442-a058-e446f580b3cd 130a697ca4b70e881cbb1061dd803eb9 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.RNA-Seq.S64_L007_R1.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R1_001.fastq.gz 3540596161 FASTQ S64_L007_R1 submitted_unaligned CPTAC3 4501fe75-7e04-4fc8-9b96-80dc695086b6 0e4cf879fa33f40b221ceb74689ecf6e {"aliquot_tag": "ALQ_caabc78e", "sample": "S64", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.RNA-Seq.S64_L007_R2.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ S64_L007_R2 submitted_unaligned CPTAC3 e7334afa-2cbe-448d-9768-0bff2678dec7 6b87dfb9970d0cf2e5316a174e6d8577 {"aliquot_tag": "ALQ_caabc78e", "sample": "S64", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.RNA-Seq.transcriptome.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.transcriptome.gdc_realn.bam 8737814989 BAM transcriptome harmonized CPTAC3 ff11363d-4ef7-403b-a223-7ead34a39590 3af3be81a150497b3402dd1902b6d969 {"aliquot_tag": "ALQ_caabc78e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.WGS.N C3N-04683 GBM WGS blood_normal CPT0293500002 CPT0293500002.WholeGenome.RP-2158.bam 23861570825 BAM submitted_aligned CPTAC3 069f7c09-b676-4e5a-ba82-2a9a294626e4 ccc32d0f3fc0645e429797f55e51564f {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04683.WGS.N.hg38 C3N-04683 GBM WGS blood_normal CPT0293500002 83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wgs_gdc_realn.bam 71643728765 BAM harmonized CPTAC3 f3bee196-c66b-45c1-92f3-fb04a65c0b65 ccdfbbaeb5ce4a4620f1005631128dee {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04683.WGS.T C3N-04683 GBM WGS tumor CPT0293480006 CPT0293480006.WholeGenome.RP-2158.bam 26158848666 BAM submitted_aligned CPTAC3 d33daf31-0425-4a15-8b2f-481a5eb955d3 7e58ca71df02cbbaff91ea66fdefc4c1 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.WGS.T.hg38 C3N-04683 GBM WGS tumor CPT0293480006 caea80b3-44ef-4e4b-a5a5-91889e0ca761_wgs_gdc_realn.bam 78260836985 BAM harmonized CPTAC3 9e7543c1-4ea4-4c3c-96ca-788a5933eb1b 3842a14c65b9b5ff0e856fd1b2e1c3b5 {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.WXS.N C3N-04683 GBM WXS blood_normal CPT0293500002 CPT0293500002.WholeExome.RP-1303.bam 23178721077 BAM submitted_aligned CPTAC3 c3760cf6-acd6-4c2e-8fb8-a1f0d09458bf 6c58fe6affa84fe7dcc4fe3258cf6727 {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04683.WXS.N.hg38 C3N-04683 GBM WXS blood_normal CPT0293500002 83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wxs_gdc_realn.bam 31548967163 BAM harmonized CPTAC3 4cd843ae-9cf6-4d57-84d1-d569c1e95ddf 7e9256d8ba34af6f480c1fb2540bdaf0 {"aliquot_tag": "ALQ_a6558662", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04683.WXS.T C3N-04683 GBM WXS tumor CPT0293480006 CPT0293480006.WholeExome.RP-1303.bam 20458737584 BAM submitted_aligned CPTAC3 ae7f4ae7-797e-4ad8-a827-1459e7f0c6b0 68f16ba08f498f521e88ec11ae39179d {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04683.WXS.T.hg38 C3N-04683 GBM WXS tumor CPT0293480006 caea80b3-44ef-4e4b-a5a5-91889e0ca761_wxs_gdc_realn.bam 29106959762 BAM harmonized CPTAC3 eb548d65-f75d-43a2-8ff7-91f8654f2ea7 45c3a28d3b2473fb4c4cf8bd698e4b8f {"aliquot_tag": "ALQ_5a14da1f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.MethArray.Green.T C3N-04686 GBM Methylation_Array tumor CPT0293570006 204367490084_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66a26213-a395-480b-9256-5abda11e2cf5 6b69a1776224b8c5df82d268a72584e8 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.MethArray.Red.T C3N-04686 GBM Methylation_Array tumor CPT0293570006 204367490084_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 b80b6883-9978-4079-83f6-221061a28c57 2c7736cb9a6f9eb1613fc473f56fc5ff {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.miRNA-Seq.S36_L008_R1.T C3N-04686 GBM miRNA-Seq tumor CPT0293570009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCAACA_S36_L008_R1_001.unaln.bam 258556529 BAM S36_L008_R1 submitted_unaligned CPTAC3 caf47f87-2541-49f0-ad07-f4c0332f823c 1fb2bda6ad5031c47939141caab55161 {"aliquot_tag": "ALQ_83a783fa", "sample": "S36", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.miRNA-Seq.T.hg38 C3N-04686 GBM miRNA-Seq tumor CPT0293570009 4ea5c927-9285-40e9-b09b-04885b88f969_mirnaseq_gdc_realn.bam 290410092 BAM harmonized CPTAC3 549a369e-c652-493b-a59b-a2ed261aa15f adeafb633053955ac290bdbe2310e9e1 {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.RNA-Seq.chimeric.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.chimeric.gdc_realn.bam 29743783 BAM chimeric harmonized CPTAC3 31126ba1-8293-471b-b815-262d1e328b23 346356e7e24eaa08ce523ee50f5f309f {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.RNA-Seq.genomic.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.genomic.gdc_realn.bam 8202374839 BAM genomic harmonized CPTAC3 01349435-6f3c-49d4-af02-17a528fffac2 488e603b5703b00166a65fc75743f0c0 {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.RNA-Seq.S14_L004_R1.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 157280cb-210f-407f-997c-cbd5fbd18578 e0f8294a1eb035c954a3fbc05b11716d {"aliquot_tag": "ALQ_83a783fa", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.RNA-Seq.S14_L004_R2.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 1721a99d2d7018e1c7e25d1ea23ff2ef {"aliquot_tag": "ALQ_83a783fa", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.RNA-Seq.transcriptome.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.transcriptome.gdc_realn.bam 9892164091 BAM transcriptome harmonized CPTAC3 01f4dfba-1e37-4677-af80-e1367363ef1d 39e6af1a221a8eca8de191d57de4c37f {"aliquot_tag": "ALQ_83a783fa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.WGS.N C3N-04686 GBM WGS blood_normal CPT0293620002 CPT0293620002.WholeGenome.RP-2158.bam 22070360060 BAM submitted_aligned CPTAC3 e8306e62-ec47-4ca0-b8ba-9fa4b7a668e7 b77b1506c350d139b34023b8960abd87 {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04686.WGS.N.hg38 C3N-04686 GBM WGS blood_normal CPT0293620002 04d7ff8e-1924-477d-a04b-5eaef2815a7d_wgs_gdc_realn.bam 66143723882 BAM harmonized CPTAC3 1617d7cd-32d7-40c4-92a8-c7d33265aeea 980bdbd23325fd3b1145f84b10c00cc6 {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04686.WGS.T C3N-04686 GBM WGS tumor CPT0293570006 CPT0293570006.WholeGenome.RP-2158.bam 26806647950 BAM submitted_aligned CPTAC3 224d7c26-b579-4717-864d-ea58579ea40f f4dc76a7a066aa6b0f1e837e42b51d66 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.WGS.T.hg38 C3N-04686 GBM WGS tumor CPT0293570006 c5c81116-8317-4cbd-89c7-d189c6bd58d5_wgs_gdc_realn.bam 79483468119 BAM harmonized CPTAC3 59582a18-0dfc-420d-bfbd-dfd9aac6c58a 5daa3d0c2ef17566ace9771687e836d0 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.WXS.N C3N-04686 GBM WXS blood_normal CPT0293620002 CPT0293620002.WholeExome.RP-1303.bam 26880496920 BAM submitted_aligned CPTAC3 b2e7a4a2-092b-4219-9d0c-f194bde58697 52778880483816158cdc79715e542179 {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04686.WXS.N.hg38 C3N-04686 GBM WXS blood_normal CPT0293620002 04d7ff8e-1924-477d-a04b-5eaef2815a7d_wxs_gdc_realn.bam 36653203165 BAM harmonized CPTAC3 f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8 344b6031b7ad1841f6723d0064cee72b {"aliquot_tag": "ALQ_5a01a7ac", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04686.WXS.T C3N-04686 GBM WXS tumor CPT0293570006 CPT0293570006.WholeExome.RP-1303.bam 21163461417 BAM submitted_aligned CPTAC3 4d9a0556-b68f-4487-ada6-7909db5d3e88 e8df2a60a50726cd0d820deadffe7504 {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor CPT0293570006 c5c81116-8317-4cbd-89c7-d189c6bd58d5_wxs_gdc_realn.bam 29534710079 BAM harmonized CPTAC3 349a677b-4595-415c-b4ba-774a966c92c7 72aa2a7252b4732a09b0289d0e32a04e {"aliquot_tag": "ALQ_13189e6b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.MethArray.Green.T C3N-04687 GBM Methylation_Array tumor CPT0293640006 204930630082_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a9484bdd-0eac-4a2b-8fdc-e08cf7f19dbe b145ee31fb1af157c4224d8086ad87c5 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.MethArray.Red.T C3N-04687 GBM Methylation_Array tumor CPT0293640006 204930630082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 be21d657-eedf-4d89-8883-cb7eb242f3f6 077bd220d44cce7bf8eebc72752a790d {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.miRNA-Seq.S22_L007_R1.T C3N-04687 GBM miRNA-Seq tumor CPT0293640009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACAGTG_S22_L007_R1_001.unaln.bam 208503100 BAM S22_L007_R1 submitted_unaligned CPTAC3 2cf5871c-e227-4a62-a47f-4f7b400d3b9f 2f4d1d2017eb4ebd438b63f8b0ee945d {"aliquot_tag": "ALQ_42938b84", "sample": "S22", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.miRNA-Seq.T.hg38 C3N-04687 GBM miRNA-Seq tumor CPT0293640009 7a186112-57f4-4454-8e2b-e1cb78dabdf4_mirnaseq_gdc_realn.bam 228891390 BAM harmonized CPTAC3 f420bc48-fe3b-4717-b2fa-79faed28c2ca ec6cdaca9cf9e6c064182f096b3d0c66 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.RNA-Seq.chimeric.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.chimeric.gdc_realn.bam 616341390 BAM chimeric harmonized CPTAC3 5ae2757b-4012-4eca-9163-3e0faae2265f b151c39e6c99350b0d43b89adabcb1a8 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.genomic.gdc_realn.bam 11869610513 BAM genomic harmonized CPTAC3 18d53c42-543f-40cd-a958-3d1a1437b8bc af017e3e462dea9f897a747e104e1331 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.RNA-Seq.S5_L002_R1.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 5813883a-bd76-4717-b554-85107c414177 42954edf1fc37e2a6a1190c29ca3837d {"aliquot_tag": "ALQ_42938b84", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.RNA-Seq.S5_L002_R2.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 77cd363131876e03e6634aa1c5909f27 {"aliquot_tag": "ALQ_42938b84", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.RNA-Seq.transcriptome.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.transcriptome.gdc_realn.bam 12890932666 BAM transcriptome harmonized CPTAC3 a54a1eb3-b948-4cbd-ba01-813bd331e9f8 31f74ebe6dcff3e540e42e4e97713666 {"aliquot_tag": "ALQ_42938b84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.WGS.N C3N-04687 GBM WGS blood_normal CPT0293690002 CPT0293690002.WholeGenome.RP-2158.bam 27529329254 BAM submitted_aligned CPTAC3 5168a4c1-d7bf-4315-9416-7ca03219f455 676212b8c52b9fca93a8b6f6abd90b97 {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04687.WGS.N.hg38 C3N-04687 GBM WGS blood_normal CPT0293690002 89cc8a15-7059-48f4-b028-36add2ef000e_wgs_gdc_realn.bam 82172701135 BAM harmonized CPTAC3 a12ebbd1-84fa-441b-8b7e-019cbde83059 cf407141f3a1121e2ce622324dadb69b {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04687.WGS.T C3N-04687 GBM WGS tumor CPT0293640006 CPT0293640006.WholeGenome.RP-2158.bam 24215834475 BAM submitted_aligned CPTAC3 78c0a239-fa60-437f-9f48-deed8e1bdf75 329a9eaead33c085c72a82db6584a92a {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.WGS.T.hg38 C3N-04687 GBM WGS tumor CPT0293640006 8d5b75ae-e777-4df1-8837-4a71d060d681_wgs_gdc_realn.bam 70782620714 BAM harmonized CPTAC3 0e2b89fc-c483-476d-96f9-d0dcdbcec179 b77968a4dabbd1b8581bac287654c362 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.WXS.N C3N-04687 GBM WXS blood_normal CPT0293690002 CPT0293690002.WholeExome.RP-1303.bam 25262694720 BAM submitted_aligned CPTAC3 201962bb-0a08-42ae-bbeb-70d26f8f2168 a0c1563bf195301a45abb81d022b7c02 {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04687.WXS.N.hg38 C3N-04687 GBM WXS blood_normal CPT0293690002 89cc8a15-7059-48f4-b028-36add2ef000e_wxs_gdc_realn.bam 34658403577 BAM harmonized CPTAC3 24cdf0cb-e910-4e7b-854d-88a58b9fc6cd 9f3cb128be754dc46090c14466277e77 {"aliquot_tag": "ALQ_2dd196bd", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04687.WXS.T C3N-04687 GBM WXS tumor CPT0293640006 CPT0293640006.WholeExome.RP-1303.bam 18900010222 BAM submitted_aligned CPTAC3 612866d9-7349-4e34-a5df-b9b8974ceba4 f7ebadc8f54cfecfd93a5923b4b351a8 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04687.WXS.T.hg38 C3N-04687 GBM WXS tumor CPT0293640006 8d5b75ae-e777-4df1-8837-4a71d060d681_wxs_gdc_realn.bam 25765521874 BAM harmonized CPTAC3 56d88fed-d037-4804-a093-b009c714bd85 540e21342eab6e05f6fc70fef7e7b119 {"aliquot_tag": "ALQ_d22c9615", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04688.RNA-Seq.chimeric.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.chimeric.gdc_realn.bam 82810764 BAM chimeric harmonized CPTAC3 85686f00-7d26-49b8-b0bb-8f992536671d 8e3e8e44b37daf3e2e3b791d576de1b0 {"aliquot_tag": "ALQ_8a5fa39b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04688.RNA-Seq.genomic.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.genomic.gdc_realn.bam 7562646517 BAM genomic harmonized CPTAC3 22fa1665-8d52-4b87-88e5-bf69f7652fad 12e28695303067b58648cc77169a984d {"aliquot_tag": "ALQ_8a5fa39b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04688.RNA-Seq.S6_R1.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R1_001.fastq.gz 4495689608 FASTQ S6_R1 submitted_unaligned CPTAC3 3dfcb302-6978-4bfa-9986-d63485bffa00 141d3074cd55b2046be94e1da8f5e1d2 {"aliquot_tag": "ALQ_8a5fa39b", "sample": "S6", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04688.RNA-Seq.S6_R2.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R2_001.fastq.gz 4665353178 FASTQ S6_R2 submitted_unaligned CPTAC3 f4aee9ea-7564-4b34-b48a-6b075d30ac05 f540d35465674bb365a544283e840565 {"aliquot_tag": "ALQ_8a5fa39b", "sample": "S6", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04688.RNA-Seq.transcriptome.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.transcriptome.gdc_realn.bam 6471833677 BAM transcriptome harmonized CPTAC3 e1abff5c-441d-4d5c-8a32-544f168c61b5 358ea9b57f2d8b9a0e026bddda0d2bb6 {"aliquot_tag": "ALQ_8a5fa39b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04689.RNA-Seq.chimeric.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.chimeric.gdc_realn.bam 102857264 BAM chimeric harmonized CPTAC3 54a5a599-d3a6-44b6-8aa3-661d4f14df2d 8d5373f0180e57539bf3702fba04d385 {"aliquot_tag": "ALQ_3cbb9af4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04689.RNA-Seq.genomic.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.genomic.gdc_realn.bam 5977554989 BAM genomic harmonized CPTAC3 8bf77e51-8f61-4c7b-aa1c-837c8d0ed78c 88fc3fd2ef2b99d718cc39c29191c043 {"aliquot_tag": "ALQ_3cbb9af4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04689.RNA-Seq.S54_R1.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R1_001.fastq.gz 3966281016 FASTQ S54_R1 submitted_unaligned CPTAC3 b6b7d197-cd63-443b-94a4-6bbf901f93b9 574e76ed5540a49687018d17a6b59d8c {"aliquot_tag": "ALQ_3cbb9af4", "sample": "S54", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04689.RNA-Seq.S54_R2.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R2_001.fastq.gz 4071577972 FASTQ S54_R2 submitted_unaligned CPTAC3 380cf5f9-c798-449a-953f-f746c14a527c 0301c71e8650587f8c2cb0acbb885f17 {"aliquot_tag": "ALQ_3cbb9af4", "sample": "S54", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04689.RNA-Seq.transcriptome.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.transcriptome.gdc_realn.bam 4742032571 BAM transcriptome harmonized CPTAC3 2e231368-70eb-43d8-ab8c-d2e3beb8ada0 756d7cf9cf563dbe193de4652222fb9f {"aliquot_tag": "ALQ_3cbb9af4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.MethArray.Green.T C3N-04691 GBM Methylation_Array tumor CPT0293770006 204372030087_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e6ee78a8-883c-4e1e-b06a-fd6adba317a5 c2c7fec8024b412ccdac55b4483d1280 {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.MethArray.Red.T C3N-04691 GBM Methylation_Array tumor CPT0293770006 204372030087_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 c93601c7-11a6-48c9-abd0-438d65809d42 164f5511997b9881a45830151f569c28 {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.miRNA-Seq.S34_L008_R1.T C3N-04691 GBM miRNA-Seq tumor CPT0293770009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATGGC_S34_L008_R1_001.unaln.bam 281130791 BAM S34_L008_R1 submitted_unaligned CPTAC3 6d5df380-8272-4933-856f-c8c14cddf5ab 73e7bbc759479d193fc3c9f07a9bd616 {"aliquot_tag": "ALQ_ce6f22f1", "sample": "S34", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.miRNA-Seq.T.hg38 C3N-04691 GBM miRNA-Seq tumor CPT0293770009 b802112b-e57a-481c-b292-a6560fb62db4_mirnaseq_gdc_realn.bam 306479091 BAM harmonized CPTAC3 4f19e4ce-59e2-4562-a3a7-d871d430abbe 7ec6c46dc0f0105dd46e9845cf1ef9eb {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.RNA-Seq.chimeric.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.chimeric.gdc_realn.bam 22719015 BAM chimeric harmonized CPTAC3 16bdd14b-9643-46a7-aa41-fae95268c477 4dddc0c1c446da18173409cd0c54f828 {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.RNA-Seq.genomic.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.genomic.gdc_realn.bam 7183697291 BAM genomic harmonized CPTAC3 771e6bd6-9373-44f7-b866-1caab8fa613c 75df748b1cbbc31a321aa03eb1c8a349 {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.RNA-Seq.S12_L004_R1.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ S12_L004_R1 submitted_unaligned CPTAC3 8b611a73-3ec3-456e-95fd-6f25ee476c28 b987b9f75087bfbda8af2a1dc31860fe {"aliquot_tag": "ALQ_ce6f22f1", "sample": "S12", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.RNA-Seq.S12_L004_R2.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ S12_L004_R2 submitted_unaligned CPTAC3 0a016bfe-4773-486e-be6e-af9ed353c9b5 b0f5d363b67f3f3bace1ca7b157c7bc9 {"aliquot_tag": "ALQ_ce6f22f1", "sample": "S12", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.RNA-Seq.transcriptome.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.transcriptome.gdc_realn.bam 9423599268 BAM transcriptome harmonized CPTAC3 dc240c9c-4410-49f6-9a0b-7dc80b3b8dce d7bf4a982584ab518bf40089defbc6a9 {"aliquot_tag": "ALQ_ce6f22f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.WGS.N C3N-04691 GBM WGS blood_normal CPT0293790002 CPT0293790002.WholeGenome.RP-2158.bam 22737036630 BAM submitted_aligned CPTAC3 9861bacf-115c-4f88-8afd-217c8e872070 9824c46fe95cd1ae4f8c42efc543be38 {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04691.WGS.N.hg38 C3N-04691 GBM WGS blood_normal CPT0293790002 cdd22aae-ff9d-430d-a275-1da5f8befaab_wgs_gdc_realn.bam 69525083202 BAM harmonized CPTAC3 7a1f5582-fc6d-4c7f-9da4-b605a67108ea 912fe36f73fd4c48ce1501cf7a2ab55a {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04691.WGS.T C3N-04691 GBM WGS tumor CPT0293770006 CPT0293770006.WholeGenome.RP-2158.bam 26615436611 BAM submitted_aligned CPTAC3 5b36d3a4-75cd-4f1d-bd42-a4465f2d1aaf 566348b7e5d3b25a08530ead22d3ce5c {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.WGS.T.hg38 C3N-04691 GBM WGS tumor CPT0293770006 c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wgs_gdc_realn.bam 79639650961 BAM harmonized CPTAC3 705077f1-277d-46d7-85d6-3248b1d8a3db ea67330b5b01823f3f65598678e8b479 {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.WXS.N C3N-04691 GBM WXS blood_normal CPT0293790002 CPT0293790002.WholeExome.RP-1303.bam 27923809616 BAM submitted_aligned CPTAC3 0140fcd4-d417-4363-9558-629a455e602f c124f5265b86601eb2d0b896fa9d4928 {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04691.WXS.N.hg38 C3N-04691 GBM WXS blood_normal CPT0293790002 cdd22aae-ff9d-430d-a275-1da5f8befaab_wxs_gdc_realn.bam 37966628766 BAM harmonized CPTAC3 c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3 1a3b0bac4482a34ddb52f33c1c5f36f7 {"aliquot_tag": "ALQ_e68d4518", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04691.WXS.T C3N-04691 GBM WXS tumor CPT0293770006 CPT0293770006.WholeExome.RP-1303.bam 23083766040 BAM submitted_aligned CPTAC3 e22398a1-ddd9-4518-b3c2-6b3e978a87d4 d70e6cf1dbe1b3d2dd532f974945e36d {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04691.WXS.T.hg38 C3N-04691 GBM WXS tumor CPT0293770006 c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wxs_gdc_realn.bam 32312688782 BAM harmonized CPTAC3 4cfd40cf-be18-4ded-aafc-26e3705fb482 325e14c334fc8958d9865ffce49692cb {"aliquot_tag": "ALQ_5ed03f60", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.MethArray.Green.T C3N-04693 GBM Methylation_Array tumor CPT0293800006 204367460011_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dc3cfb75-f88f-438e-aec1-92a275ef9172 55a91915bb7a9bcd8e658d84f3530a91 {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.MethArray.Red.T C3N-04693 GBM Methylation_Array tumor CPT0293800006 204367460011_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 9dd8897c-937f-4c68-9ed1-5150a59bbb16 854fbe168baaf4ef8f0407977f1ac04b {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.miRNA-Seq.S1_L008_R1.T C3N-04693 GBM miRNA-Seq tumor CPT0293800009 200224_UNC31-K00269_0267_AHC722BBXY_ATCACG_S1_L008_R1_001.unaln.bam 220351053 BAM S1_L008_R1 submitted_unaligned CPTAC3 81b73edc-26ae-4642-9dd0-84e7340fd485 9d6e3626af40742d214c9e36908398d8 {"aliquot_tag": "ALQ_8d194c34", "sample": "S1", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.miRNA-Seq.T.hg38 C3N-04693 GBM miRNA-Seq tumor CPT0293800009 307ae310-cd8b-4c18-aad1-2953d96267b7_mirnaseq_gdc_realn.bam 245401329 BAM harmonized CPTAC3 c2efe5e4-452b-4071-a687-3f86307753dd 94d97309aab24a056fb28904502c2cb8 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.RNA-Seq.chimeric.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.chimeric.gdc_realn.bam 52422897 BAM chimeric harmonized CPTAC3 4a6155a0-ca05-4ec1-ad7b-27e3f43dc7c3 f23d36c5108e3a9e0eb25e534d49c728 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.RNA-Seq.genomic.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.genomic.gdc_realn.bam 11331977929 BAM genomic harmonized CPTAC3 864dd29c-c2f7-4d60-840f-ca4b51a80cb1 db1d92f0913d807711266a6226040020 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.RNA-Seq.S1_L001_R1.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 95e19f64-f558-4704-b020-3cc06287e7f4 ebc4a382c65532a43ce9ee0e2293f80d {"aliquot_tag": "ALQ_8d194c34", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.RNA-Seq.S1_L001_R2.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 7144248c-c457-48a8-bd20-e742f014d9bd f527f436ba9c7a431eee4a2d0727cd91 {"aliquot_tag": "ALQ_8d194c34", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.RNA-Seq.transcriptome.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.transcriptome.gdc_realn.bam 15477885391 BAM transcriptome harmonized CPTAC3 96aeadbf-ce1d-471e-a984-b066d67d9b84 ffe13e00d08b739005602b073ff2d067 {"aliquot_tag": "ALQ_8d194c34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.WGS.N C3N-04693 GBM WGS blood_normal CPT0293830004 CPT0293830004.WholeGenome.RP-2158.bam 21452981251 BAM submitted_aligned CPTAC3 7c393eae-279f-43bc-abec-5f4e84caa34c 5c1d1dcaa658498d07c25ca230c99c73 {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04693.WGS.N.hg38 C3N-04693 GBM WGS blood_normal CPT0293830004 b996ab8e-ae14-42ed-ac60-b74d932c0460_wgs_gdc_realn.bam 63795296473 BAM harmonized CPTAC3 de5ee410-fb28-490e-81a9-60d05e4039f8 cf9ca1f955a3d39f484b2b8c719ccdbe {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04693.WGS.T C3N-04693 GBM WGS tumor CPT0293800006 CPT0293800006.WholeGenome.RP-2158.bam 29358675954 BAM submitted_aligned CPTAC3 3c2a3429-a00b-4aa5-958d-bdcadca1ac38 61683978f1356b0ec83cbd1ab98684ec {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.WGS.T.hg38 C3N-04693 GBM WGS tumor CPT0293800006 27f4dc0c-6231-4650-a00e-9ccc4e942c89_wgs_gdc_realn.bam 86972627335 BAM harmonized CPTAC3 ccc9794f-4efc-4284-8b1c-2cb5fc33e957 2bec7b18592d28cbaeaf92aed7616d4f {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.WXS.N C3N-04693 GBM WXS blood_normal CPT0293830004 CPT0293830004.WholeExome.RP-1303.bam 30028625002 BAM submitted_aligned CPTAC3 03043151-b2c5-4e51-b2ce-677ad67c8b23 063ca8487e630fc42dd91e1cd782d50e {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04693.WXS.N.hg38 C3N-04693 GBM WXS blood_normal CPT0293830004 b996ab8e-ae14-42ed-ac60-b74d932c0460_wxs_gdc_realn.bam 40597818463 BAM harmonized CPTAC3 6fb6bf47-d501-4858-ba49-6e2cd516474a fdce0f0236fbcfbabd942e8ed0a2b0e1 {"aliquot_tag": "ALQ_b4084a59", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04693.WXS.T C3N-04693 GBM WXS tumor CPT0293800006 CPT0293800006.WholeExome.RP-1303.bam 48569729300 BAM submitted_aligned CPTAC3 3791b6fc-e492-439c-bf45-0095fcd1a11f 948fa883cd45db3a29f88947fd354182 {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor CPT0293800006 27f4dc0c-6231-4650-a00e-9ccc4e942c89_wxs_gdc_realn.bam 66369099884 BAM harmonized CPTAC3 e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e f6f4cfcc6be0b8fdc2073a9c6ce23d7a {"aliquot_tag": "ALQ_1da651a5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.MethArray.Green.T C3N-04695 GBM Methylation_Array tumor CPT0293870006 204930630111_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 566ed0bc-6a80-4eca-9e7c-c1b514e7f66e 0c75d78c253fbe2b25978c382278c407 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.MethArray.Red.T C3N-04695 GBM Methylation_Array tumor CPT0293870006 204930630111_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 bb5c6094-2ff4-4b49-8acd-a64c53d38105 2f9361c00e031ed99a98c29eb65e3947 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.miRNA-Seq.S31_L007_R1.T C3N-04695 GBM miRNA-Seq tumor CPT0293870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GCCAAT_S31_L007_R1_001.unaln.bam 254636701 BAM S31_L007_R1 submitted_unaligned CPTAC3 116a4933-a918-4b62-be94-f8dd406d55e0 2bad041d5acecccb2f27be5e41b4b947 {"aliquot_tag": "ALQ_3f399024", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.miRNA-Seq.T.hg38 C3N-04695 GBM miRNA-Seq tumor CPT0293870009 8ffc0ec3-0cbc-45a3-bf2f-978b97a6cf9a_mirnaseq_gdc_realn.bam 278835217 BAM harmonized CPTAC3 b96ad40b-b6ee-425e-b039-0b7b5f79c219 3412bd76feaf0f516c65b36f468f00a4 {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.RNA-Seq.chimeric.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.chimeric.gdc_realn.bam 545947210 BAM chimeric harmonized CPTAC3 e1ea7fc3-4615-4e8e-b377-e666128bf67e 1e0a7fe537acfed9e1f8b47d10300123 {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.genomic.gdc_realn.bam 9691045980 BAM genomic harmonized CPTAC3 2fb3d725-8f6c-477e-a9bf-b2e58ae5fa98 c4b001ed1db437200c385ceafac4237f {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.RNA-Seq.S6_L002_R1.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 192aec81-2351-4e27-88b7-36549fbf6d8d 72a7715debc655f045322ddaa760a31c {"aliquot_tag": "ALQ_3f399024", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.RNA-Seq.S6_L002_R2.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 37a18500-3aa6-42ad-99ed-e1c041194c48 147f923d871392c37cbf9babe53dbf9f {"aliquot_tag": "ALQ_3f399024", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.RNA-Seq.transcriptome.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.transcriptome.gdc_realn.bam 11250955216 BAM transcriptome harmonized CPTAC3 cf1e6599-68b5-4420-b24e-7da566bf9acd 1754110c08e54978c49b3823e4c41c26 {"aliquot_tag": "ALQ_3f399024", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.WGS.N C3N-04695 GBM WGS blood_normal CPT0293890002 CPT0293890002.WholeGenome.RP-2158.bam 22732109080 BAM submitted_aligned CPTAC3 6adf632a-fedb-456f-aad9-67b5c4cd8a7a 829513d0bef0cdc6e691e191e7eccb84 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04695.WGS.N.hg38 C3N-04695 GBM WGS blood_normal CPT0293890002 dc406b2d-e0c8-49bf-b1b1-7e1929833382_wgs_gdc_realn.bam 66383764365 BAM harmonized CPTAC3 fab7e8e1-714b-4798-9ef7-1612394e55d5 604d52502306f04af036456747113049 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04695.WGS.T C3N-04695 GBM WGS tumor CPT0293870006 CPT0293870006.WholeGenome.RP-2158.bam 27471116027 BAM submitted_aligned CPTAC3 6dd2b329-91e9-4246-ba46-b15996db89b0 0b1fcd14a9a7e467ea2bc27ff06adda0 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.WGS.T.hg38 C3N-04695 GBM WGS tumor CPT0293870006 d7f885b4-11bb-4eef-81bf-74643b30908c_wgs_gdc_realn.bam 83658438448 BAM harmonized CPTAC3 1892aa40-a858-4f1d-a3ee-24e84b7d6216 eabdc34d7bf77a2488b9292881fb8c34 {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.WXS.N C3N-04695 GBM WXS blood_normal CPT0293890002 CPT0293890002.WholeExome.RP-1303.bam 23131222441 BAM submitted_aligned CPTAC3 af079cca-f58b-42c0-94d4-28e5d16b9a3e a390bf9e8a30b10b5640a39f9f0f1fa3 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04695.WXS.N.hg38 C3N-04695 GBM WXS blood_normal CPT0293890002 dc406b2d-e0c8-49bf-b1b1-7e1929833382_wxs_gdc_realn.bam 32304960170 BAM harmonized CPTAC3 3bbdc094-e064-4c89-afec-bf59940cfe16 fcafd8a1cf75b235faae1655e8383ad6 {"aliquot_tag": "ALQ_17dbf7cd", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04695.WXS.T C3N-04695 GBM WXS tumor CPT0293870006 CPT0293870006.WholeExome.RP-1303.bam 24573077650 BAM submitted_aligned CPTAC3 b4fb3775-938a-481e-a1f6-8c2fb0ff2226 4fc4b6dfa572c14b7962cca353507bda {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04695.WXS.T.hg38 C3N-04695 GBM WXS tumor CPT0293870006 d7f885b4-11bb-4eef-81bf-74643b30908c_wxs_gdc_realn.bam 33758326958 BAM harmonized CPTAC3 f792ee2a-c245-4f1f-9ffc-6a9d7178a770 9cc648049f5b1803d9b0bb613f57435a {"aliquot_tag": "ALQ_af868db5", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04701.MethArray.Green.A C3N-04701 LSCC Methylation_Array tissue_normal CPT0293910006 204372030071_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66b97b36-668e-4403-8ee6-536d33bb103e a5217cbd2216c9ca96ec6a77659d953c {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.MethArray.Green.T C3N-04701 LSCC Methylation_Array tumor CPT0293900006 204367470124_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 21a0ab69-9a87-4632-be60-f3d49599d48f 3e2c4a7eb2a995e70159a40073826de0 {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.MethArray.Red.A C3N-04701 LSCC Methylation_Array tissue_normal CPT0293910006 204372030071_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 cb6ae2a2-bc8c-4c3a-bab2-cbc8aabd0daa aa4fc0f7cbf86b8d40a59aaf54829bd0 {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.MethArray.Red.T C3N-04701 LSCC Methylation_Array tumor CPT0293900006 204367470124_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 f0f3926b-155f-45bb-b852-beff8ce019ac e0a7a89070c0864619d2bd951d8f2c8e {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.miRNA-Seq.A.hg38 C3N-04701 LSCC miRNA-Seq tissue_normal CPT0293910009 19a5f0a4-547c-44f3-bb29-9ea1a7da6e18_mirnaseq_gdc_realn.bam 264517897 BAM harmonized CPTAC3 f130baa5-9fa6-43f2-9a93-03c16aa58ce8 1fcc290a73e354a615777b127e3cbeca {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.miRNA-Seq.S23_L001_R1.A C3N-04701 LSCC miRNA-Seq tissue_normal CPT0293910009 200325_UNC31-K00269_0272_AHHC2NBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 241055591 BAM S23_L001_R1 submitted_unaligned CPTAC3 bfafa02e-f678-49ff-bf47-255455ca6fca 326abf3c7dc4cd679d71878a2de6c223 {"aliquot_tag": "ALQ_7b25b621", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.miRNA-Seq.S7_L008_R1.T C3N-04701 LSCC miRNA-Seq tumor CPT0293900009 200224_UNC31-K00269_0267_AHC722BBXY_CAGATC_S7_L008_R1_001.unaln.bam 222982001 BAM S7_L008_R1 submitted_unaligned CPTAC3 b6e6e43a-7bcf-4366-b957-c2f084445703 be347253d6799a052f916aebabe5e5fe {"aliquot_tag": "ALQ_46459f91", "sample": "S7", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.miRNA-Seq.T.hg38 C3N-04701 LSCC miRNA-Seq tumor CPT0293900009 4e931765-e13d-42d2-ab5a-6c2535bf7202_mirnaseq_gdc_realn.bam 242228306 BAM harmonized CPTAC3 b085f6cd-7cbb-4030-9071-44462b03cd5b e628d0e52ec171481f046e774aa3dc18 {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.RNA-Seq.chimeric.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.chimeric.gdc_realn.bam 72376885 BAM chimeric harmonized CPTAC3 cf39f0eb-35e4-4bf6-ae94-c184a800da12 5dcae9a9f986c5029594736ed255900f {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.RNA-Seq.chimeric.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.chimeric.gdc_realn.bam 44157595 BAM chimeric harmonized CPTAC3 3f773d9a-8ef6-4cd6-880b-000e871a7f6f b22c4d3558f79b32773dd0aaa5887413 {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.RNA-Seq.genomic.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.genomic.gdc_realn.bam 8985496669 BAM genomic harmonized CPTAC3 e7fb4a2c-cb17-448b-850e-87f082f80bc5 8a67b306ea3ad4eb5b6b13b54d28414c {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.RNA-Seq.genomic.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.genomic.gdc_realn.bam 9359265956 BAM genomic harmonized CPTAC3 75472f2f-b05c-435f-8bd1-34a1c6659d95 5a48bad70f7ea2522a6468576231891f {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.RNA-Seq.S31_L008_R1.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R1_001.fastq.gz 4704619016 FASTQ S31_L008_R1 submitted_unaligned CPTAC3 b03b01be-db81-4ec8-b893-b790fcf1e565 11f722aed074c49688c3b841acdf82a3 {"aliquot_tag": "ALQ_7b25b621", "sample": "S31", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.RNA-Seq.S31_L008_R2.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R2_001.fastq.gz 4833254640 FASTQ S31_L008_R2 submitted_unaligned CPTAC3 b5b589c7-bfd5-4bcd-ab33-1fdc83c57369 1f44389ee5686e091e2bd94020d26866 {"aliquot_tag": "ALQ_7b25b621", "sample": "S31", "lane": "L008", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.RNA-Seq.S7_L002_R1.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R1_001.fastq.gz 4667721275 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 57aa2d40-9195-48bf-b4a7-0b78a10f0d63 23558d866156b8caebc26d3d81327f8a {"aliquot_tag": "ALQ_46459f91", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.RNA-Seq.S7_L002_R2.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R2_001.fastq.gz 4981914719 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 5b256c5e-2b30-4b00-8625-fe4cbd0945ff ab036cbf86edd457647abdcb2f334780 {"aliquot_tag": "ALQ_46459f91", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.RNA-Seq.transcriptome.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.transcriptome.gdc_realn.bam 12306895545 BAM transcriptome harmonized CPTAC3 ee570fa8-55a6-46bd-ab59-edae8b88eb19 4196028eba7457d7dea06abe35598149 {"aliquot_tag": "ALQ_7b25b621", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.RNA-Seq.transcriptome.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.transcriptome.gdc_realn.bam 12964416634 BAM transcriptome harmonized CPTAC3 8fda6a29-e85e-4d48-b93c-4c24cd8160a8 b61ca60491105ea99aa1dd249b4f4f08 {"aliquot_tag": "ALQ_46459f91", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.WGS.N C3N-04701 LSCC WGS blood_normal CPT0293940002 CPT0293940002.WholeGenome.RP-2158.bam 26367282623 BAM submitted_aligned CPTAC3 a5aff2c6-4bad-4e55-a2ae-95b3a1b565ce 2503592f22bd4e4a6c9eb2e7cbf6d0e4 {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04701.WGS.N.hg38 C3N-04701 LSCC WGS blood_normal CPT0293940002 dea222cc-4710-482a-b1b9-12cfc82f8bb2_wgs_gdc_realn.bam 78569442278 BAM harmonized CPTAC3 ff0ab924-09a0-4169-af5a-304760c894ed 523eac379f87f7c22d7c3d14839a504a {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04701.WGS.T C3N-04701 LSCC WGS tumor CPT0293900006 CPT0293900006.WholeGenome.RP-2158.bam 20944610111 BAM submitted_aligned CPTAC3 ee31857c-0abf-46b9-a02d-8f2744756492 44cbe31ff5815cab8cfdae4fb8c76e30 {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.WGS.T.hg38 C3N-04701 LSCC WGS tumor CPT0293900006 a5c1bd98-d6d5-4c56-9678-10c596b60c35_wgs_gdc_realn.bam 61905934854 BAM harmonized CPTAC3 5305bb2a-ddee-4206-92c2-f11f72ce674c 19866b70825ad9fcb7639dffe3a1e30b {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.WXS.A C3N-04701 LSCC WXS tissue_normal CPT0293910006 CPT0293910006.WholeExome.RP-1303.bam 22600989093 BAM submitted_aligned CPTAC3 91103f44-98d1-4887-9812-f22ba93822dc c9fb7d78392c105f686460d2c3e7f562 {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.WXS.A.hg38 C3N-04701 LSCC WXS tissue_normal CPT0293910006 09db81b4-1161-45bd-ae0a-c32ef678d229_wxs_gdc_realn.bam 30538044978 BAM harmonized CPTAC3 a140f15b-b37a-4fd4-9242-5a9e598a540e a74ea05aeb97a53296c64d493e1a9960 {"aliquot_tag": "ALQ_eb9aabb0", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04701.WXS.N C3N-04701 LSCC WXS blood_normal CPT0293940002 CPT0293940002.WholeExome.RP-1303.bam 23155972575 BAM submitted_aligned CPTAC3 87b838d9-7fff-4c39-932e-d48254c11488 9e1c373586687c8044649ac6f2201963 {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04701.WXS.N.hg38 C3N-04701 LSCC WXS blood_normal CPT0293940002 dea222cc-4710-482a-b1b9-12cfc82f8bb2_wxs_gdc_realn.bam 32040419742 BAM harmonized CPTAC3 1c58affb-da1d-4b10-9c6a-6803194220bb 7615fd53eed6c425f5862a4b637b16bb {"aliquot_tag": "ALQ_2417e0d9", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04701.WXS.T C3N-04701 LSCC WXS tumor CPT0293900006 CPT0293900006.WholeExome.RP-1303.bam 19440348653 BAM submitted_aligned CPTAC3 8f8f06d4-9072-4a56-93af-f0e315413f67 8393e5004d89e59c0f3d1f83a776081f {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04701.WXS.T.hg38 C3N-04701 LSCC WXS tumor CPT0293900006 a5c1bd98-d6d5-4c56-9678-10c596b60c35_wxs_gdc_realn.bam 27388540159 BAM harmonized CPTAC3 e6c146b0-db16-45a0-90ef-d5755873522c c26811f5f908694e3f51e255457ca0b5 {"aliquot_tag": "ALQ_d6fa8200", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04708.RNA-Seq.chimeric.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.chimeric.gdc_realn.bam 150549078 BAM chimeric harmonized CPTAC3 e4dcdaa1-b79b-4e22-8553-b69009749a4a d7635a73ec9d7ee474ea1c325913e658 {"aliquot_tag": "ALQ_8e9b46e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04708.RNA-Seq.genomic.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.genomic.gdc_realn.bam 8876759047 BAM genomic harmonized CPTAC3 f9fc5141-0536-4310-ac30-013629d2eee5 fe45f02851dca62f3945238867e02739 {"aliquot_tag": "ALQ_8e9b46e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04708.RNA-Seq.S78_R1.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R1_001.fastq.gz 5314900702 FASTQ S78_R1 submitted_unaligned CPTAC3 bcbeeb17-f994-4a13-b86e-162d6b0c4145 e9696d462410148b45b5f26a0b08a87f {"aliquot_tag": "ALQ_8e9b46e4", "sample": "S78", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04708.RNA-Seq.S78_R2.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R2_001.fastq.gz 5524224361 FASTQ S78_R2 submitted_unaligned CPTAC3 aef4958a-80ca-46c1-aeb4-942f06d6550b e244ef801796022c3e18ef2a0ff020cd {"aliquot_tag": "ALQ_8e9b46e4", "sample": "S78", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04708.RNA-Seq.transcriptome.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.transcriptome.gdc_realn.bam 5804266018 BAM transcriptome harmonized CPTAC3 fb7a30d2-2dc2-435a-985f-e4c114f2f687 b8b31d45ddbef40b807a49c27243ffed {"aliquot_tag": "ALQ_8e9b46e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.MethArray.Green.T C3N-04713 LSCC Methylation_Array tumor CPT0313120006 204367490029_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1bd8fef2-ccc4-4c6e-8d4b-04ad094720a3 e554ef86789865be10aacc7e9b5dafae {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.MethArray.Red.T C3N-04713 LSCC Methylation_Array tumor CPT0313120006 204367490029_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 1dbe1684-18a0-4adc-ae51-e4cde5c0571c 511a036ef1935f0ed46ed5e836ce8cf5 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.miRNA-Seq.S12_L008_R1.T C3N-04713 LSCC miRNA-Seq tumor CPT0313120009 200224_UNC31-K00269_0267_AHC722BBXY_CTTGTA_S12_L008_R1_001.unaln.bam 230288131 BAM S12_L008_R1 submitted_unaligned CPTAC3 ec558bf0-e1bc-4bcc-9b1c-bc4a92624846 f68672e2c21ca79c6a5938aa404ab012 {"aliquot_tag": "ALQ_1448416a", "sample": "S12", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.miRNA-Seq.T.hg38 C3N-04713 LSCC miRNA-Seq tumor CPT0313120009 9894658b-47b8-4e37-85af-90fd8f09d0fa_mirnaseq_gdc_realn.bam 264922655 BAM harmonized CPTAC3 a68a15f4-733e-48d1-ad81-d21e9c20ff95 34adab5e5b45e0e6c3eadcc6d429ce41 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.RNA-Seq.chimeric.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.chimeric.gdc_realn.bam 25349719 BAM chimeric harmonized CPTAC3 f9126ebf-5827-4cb3-9efe-51554dbeec21 6d0de03df135d1cbb282fb2a0d4f2891 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.RNA-Seq.genomic.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.genomic.gdc_realn.bam 6509753911 BAM genomic harmonized CPTAC3 375a34f0-bf33-4acb-8a96-7ebad8739261 460fad573fbb4959c61b0d1034d04d16 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.RNA-Seq.S12_L003_R1.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R1_001.fastq.gz 3134777188 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 43d99717-abff-4560-9f61-c08b6ad51e3c a2fd337c2f186558dba29c41bcbd3c21 {"aliquot_tag": "ALQ_1448416a", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.RNA-Seq.S12_L003_R2.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R2_001.fastq.gz 3376812959 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 8e7a02ce-e64b-4058-89be-1e8bffab56b3 5bf32b14eb8341d3dcef56d5a9a18d15 {"aliquot_tag": "ALQ_1448416a", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.RNA-Seq.transcriptome.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.transcriptome.gdc_realn.bam 8337734649 BAM transcriptome harmonized CPTAC3 ee1f334d-221b-4e5d-a6a0-66bd14921404 f65f1a3002677cf0acc6e7971d8b42f5 {"aliquot_tag": "ALQ_1448416a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.WGS.N C3N-04713 LSCC WGS blood_normal CPT0313130002 CPT0313130002.WholeGenome.RP-2158.bam 23276517655 BAM submitted_aligned CPTAC3 7a2bb22e-a421-459d-ac87-babf1cbd4c70 8498886175fdaf22c554ea90796b9c7c {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04713.WGS.N.hg38 C3N-04713 LSCC WGS blood_normal CPT0313130002 abcb9f24-8fc3-4847-81c8-9ba7a653708b_wgs_gdc_realn.bam 67710228475 BAM harmonized CPTAC3 fe118dcc-3a00-4479-a4cb-afe06060bf5f 1bcb0fddf572e26d10c14e9a6ff632da {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04713.WGS.T C3N-04713 LSCC WGS tumor CPT0313120006 CPT0313120006.WholeGenome.RP-2158.bam 23404441371 BAM submitted_aligned CPTAC3 0d21369d-2dc9-4a55-99d8-8492870d4d99 fcf5bcfae633043b8ac059e0791f0a84 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.WGS.T.hg38 C3N-04713 LSCC WGS tumor CPT0313120006 12d287b2-1cfd-443b-8d67-6b536b763eb1_wgs_gdc_realn.bam 68261205290 BAM harmonized CPTAC3 f3b5fe92-eb38-46c1-a633-55a42207db59 66a7f3ebad7f2398a30f3927e42a66b5 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.WXS.N C3N-04713 LSCC WXS blood_normal CPT0313130002 CPT0313130002.WholeExome.RP-1303.bam 22118693722 BAM submitted_aligned CPTAC3 b4afbb1c-aa24-43ef-b213-5900d9801d8c 942442b51524137571f10604dc96b19d {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04713.WXS.N.hg38 C3N-04713 LSCC WXS blood_normal CPT0313130002 abcb9f24-8fc3-4847-81c8-9ba7a653708b_wxs_gdc_realn.bam 29854998588 BAM harmonized CPTAC3 41595fde-387b-487c-8b4e-c2ab932591e4 ab9ed19d70aae9d489c75c74819e64d9 {"aliquot_tag": "ALQ_befab152", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04713.WXS.T C3N-04713 LSCC WXS tumor CPT0313120006 CPT0313120006.WholeExome.RP-1303.bam 19357417472 BAM submitted_aligned CPTAC3 b875dcb8-ba75-4cb9-836b-216481ad1d68 61deef7b6b9085f8cb690fc8834f5851 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04713.WXS.T.hg38 C3N-04713 LSCC WXS tumor CPT0313120006 12d287b2-1cfd-443b-8d67-6b536b763eb1_wxs_gdc_realn.bam 26695712376 BAM harmonized CPTAC3 59eb1c45-19a9-4fc2-a7f7-b7849e636b98 6b5d3b775fba6faec274b850763c1a29 {"aliquot_tag": "ALQ_84f75cfb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.MethArray.Green.A C3N-04944 LSCC Methylation_Array tissue_normal CPT0333940006 204930640011_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ac7fcad3-0557-4ad3-b8b7-97629aaf72c6 a680ad424e8824f9ede2950c9fd7cb8b {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.MethArray.Green.T C3N-04944 LSCC Methylation_Array tumor CPT0333920006 204930630078_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 83cc83b3-8ee0-4ca6-b9cb-bb37bf402c36 a9cdd09732a1aa93cfd4cbcf31562d47 {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.MethArray.Red.A C3N-04944 LSCC Methylation_Array tissue_normal CPT0333940006 204930640011_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 c6b81179-7654-4808-99c9-000c2716906f fa373e35dff22a5b3f1d4b3a260faf67 {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.MethArray.Red.T C3N-04944 LSCC Methylation_Array tumor CPT0333920006 204930630078_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 c28fa442-f460-4e8b-bab1-86ae8cc8c841 7b3b0f8fe5618c7a3af9358e7e517f5f {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.miRNA-Seq.A.hg38 C3N-04944 LSCC miRNA-Seq tissue_normal CPT0333940008 92129990-191d-467a-a8f2-7a04945dac03_mirnaseq_gdc_realn.bam 291791665 BAM harmonized CPTAC3 824d9621-2178-40ee-b94d-80abf1151377 16d0d750c7363e74ba0be36a3743d1dc {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.miRNA-Seq.S13_L006_R1.T C3N-04944 LSCC miRNA-Seq tumor CPT0333920009 201209_UNC32-K00270_0265_AHJ55WBBXY_GAGTGG_S13_L006_R1_001.unaln.bam 288371914 BAM S13_L006_R1 submitted_unaligned CPTAC3 634bdeb0-031c-47e5-b8be-213580b45fe2 6fa4fdfb2ba4fb937bdfc01475878621 {"aliquot_tag": "ALQ_ba3ec47a", "sample": "S13", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.miRNA-Seq.S6_L006_R1.A C3N-04944 LSCC miRNA-Seq tissue_normal CPT0333940008 201209_UNC32-K00270_0265_AHJ55WBBXY_CAACTA_S6_L006_R1_001.unaln.bam 267496423 BAM S6_L006_R1 submitted_unaligned CPTAC3 d4767b7c-b3ae-42da-a8c3-9ed5c8bef1f4 99ab9a7993f5880d468033cf65176d22 {"aliquot_tag": "ALQ_4279014c", "sample": "S6", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.miRNA-Seq.T.hg38 C3N-04944 LSCC miRNA-Seq tumor CPT0333920009 02bcbfb0-e7d7-4baa-9bd4-8c7dbf149b9d_mirnaseq_gdc_realn.bam 315009718 BAM harmonized CPTAC3 49a27b8c-733b-4566-8d1b-c130b4c8fb05 f296131448e6df21456ca488d62a9de1 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.RNA-Seq.chimeric.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.chimeric.gdc_realn.bam 330307505 BAM chimeric harmonized CPTAC3 e7c9fc22-6f09-4441-8c93-a72625450230 efc84e3056af2914c1e6cb60d4c1bb2a {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.RNA-Seq.chimeric.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.chimeric.gdc_realn.bam 186745784 BAM chimeric harmonized CPTAC3 98777754-78be-4a23-a6ab-fcdab7d11cd3 1be83dcde60c351479455f4aad8e03e2 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.RNA-Seq.genomic.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.genomic.gdc_realn.bam 7917656092 BAM genomic harmonized CPTAC3 0350165c-1e00-4eda-ac7f-f24e48af7f94 50d9b2bf39722abb060884824ecd8f3a {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.RNA-Seq.genomic.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.genomic.gdc_realn.bam 7620852888 BAM genomic harmonized CPTAC3 f5f864e5-d29b-43f3-86de-03c3cb8588ea 0d689f10b685d5152f805f9cffe17453 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.RNA-Seq.S13_L004_R1.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3962578034 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 c9343469-52cf-4565-80db-90ebdeaa13b4 d6dfa4afa1d3f1d39beedc64d9f9c26f {"aliquot_tag": "ALQ_4279014c", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.RNA-Seq.S13_L004_R2.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 4355974170 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 2e0be108-dd9a-4c54-818c-00de20ce1c66 99954d8bbbff51ddd79111623f26078b {"aliquot_tag": "ALQ_4279014c", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.RNA-Seq.S19_L005_R1.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 4003847490 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 ebd08a10-5fbf-4821-8d0e-c4e5579df561 ab5d738f8ab8887cd8d4d8a9a89ae465 {"aliquot_tag": "ALQ_ba3ec47a", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.RNA-Seq.S19_L005_R2.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 4301679556 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 827f415a-03aa-471c-91a4-82c5a6cf0e1d 83c50218676650d521be00e4ea3e5f4f {"aliquot_tag": "ALQ_ba3ec47a", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.RNA-Seq.transcriptome.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.transcriptome.gdc_realn.bam 9580091527 BAM transcriptome harmonized CPTAC3 b24ad7f9-e9ce-4b42-be7a-b353348b5d76 9422c824973bd76b3d2760ce8c9e4e9a {"aliquot_tag": "ALQ_4279014c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.RNA-Seq.transcriptome.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.transcriptome.gdc_realn.bam 12366800359 BAM transcriptome harmonized CPTAC3 62843aa8-09e7-495a-9295-aa6e2d6f886a 5009c244c8d338ba0dad41db9b659907 {"aliquot_tag": "ALQ_ba3ec47a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.WGS.N C3N-04944 LSCC WGS blood_normal CPT0334010002 CPT0334010002.WholeGenome.RP-2158.bam 24693379292 BAM submitted_aligned CPTAC3 38226f1f-13be-4604-b711-f7a39e5e11c8 8d82d28cc92d6df87c8ef6ed679cd9e2 {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04944.WGS.N.hg38 C3N-04944 LSCC WGS blood_normal CPT0334010002 b82c5fe0-411c-4b2d-917b-6d67c4c6d750_wgs_gdc_realn.bam 74386232386 BAM harmonized CPTAC3 5e61d33c-775d-485a-8eef-100b9d973938 ae0ff94e6ad5504f67fe853b06737e06 {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04944.WGS.T C3N-04944 LSCC WGS tumor CPT0333920006 CPT0333920006.WholeGenome.RP-2158.bam 22296538949 BAM submitted_aligned CPTAC3 fe21c720-f9ff-4562-9481-e327cacccfc5 a7a26d400473ad8051ca557dcb35619e {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.WGS.T.hg38 C3N-04944 LSCC WGS tumor CPT0333920006 6e1a8721-f8d3-4202-b715-d5a8cfd3a3c3_wgs_gdc_realn.bam 64229198132 BAM harmonized CPTAC3 f6136b10-2cd2-49e4-ab71-3f95d163259f d09d27cbcfc1c788ecebd8c77e3f5c9e {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.WXS.A C3N-04944 LSCC WXS tissue_normal CPT0333940006 CPT0333940006.WholeExome.RP-1303.bam 16720005498 BAM submitted_aligned CPTAC3 0ac7b74b-6144-41ac-bd12-4936b3e669e6 4592799b5a75d11a0dc9ae63275e3ca7 {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04944.WXS.A.hg38 C3N-04944 LSCC WXS tissue_normal CPT0333940006 5dae124a-ee83-4aa5-850a-42b21248a20e_wxs_gdc_realn.bam 23536171518 BAM harmonized CPTAC3 aa6901fa-3093-45d9-b08f-c846ab662ab5 0f3955f63c142f47cca8239504a27584 {"aliquot_tag": "ALQ_a5c12c4b", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04944.WXS.N C3N-04944 LSCC WXS blood_normal CPT0334010002 CPT0334010002.WholeExome.RP-1303.bam 21205430147 BAM submitted_aligned CPTAC3 177f0369-331b-45c5-9bf1-9b6c219714bd 6ea956c5da2c8cbd5aca8cd84d2e99ba {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04944.WXS.N.hg38 C3N-04944 LSCC WXS blood_normal CPT0334010002 b82c5fe0-411c-4b2d-917b-6d67c4c6d750_wxs_gdc_realn.bam 28712275057 BAM harmonized CPTAC3 a24e82ab-e74f-4de0-88c4-c2509d202bda 5e88b05a616b66a3129f8b1d872dc367 {"aliquot_tag": "ALQ_88e40864", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04944.WXS.T C3N-04944 LSCC WXS tumor CPT0333920006 CPT0333920006.WholeExome.RP-1303.bam 21515038676 BAM submitted_aligned CPTAC3 7ea24cb4-0ca1-4c6f-b9d8-35b212c27403 d75db7068d5daf69b00ee98059ecd0f1 {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04944.WXS.T.hg38 C3N-04944 LSCC WXS tumor CPT0333920006 6e1a8721-f8d3-4202-b715-d5a8cfd3a3c3_wxs_gdc_realn.bam 29830416478 BAM harmonized CPTAC3 811668a6-7b58-46a0-9144-d156623bc2bb 45733f53ee37b17341552228b8bd660d {"aliquot_tag": "ALQ_2a81d9eb", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04982.MethArray.Green.A C3N-04982 LSCC Methylation_Array tissue_normal CPT0334340006 204930630081_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 55b64f21-bb65-4b18-adc3-7cafa6002750 85ce5c12c3c17016f3e6aa8dc73d69ae {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.MethArray.Green.T C3N-04982 LSCC Methylation_Array tumor CPT0334320006 204930630040_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 1dabd59c-b3ae-47a3-b80f-1902beb3e9e7 6e6a70f011b401e3a84ff0c89dd7c572 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.MethArray.Red.A C3N-04982 LSCC Methylation_Array tissue_normal CPT0334340006 204930630081_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 3011375e-1d94-40ae-8c91-29dbf73e3a7d b09d5f23f92568e01395c8a8b69c819b {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.MethArray.Red.T C3N-04982 LSCC Methylation_Array tumor CPT0334320006 204930630040_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 9a1e3f78-34da-407c-a1b9-343d9fbcef55 54fd9171fe7bda98d45ecaa6457f85d1 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.miRNA-Seq.A.hg38 C3N-04982 LSCC miRNA-Seq tissue_normal CPT0334340009 fc53e5e5-3c7a-4a91-a4ac-3a31e88ed9a4_mirnaseq_gdc_realn.bam 244576993 BAM harmonized CPTAC3 bf3cf179-0833-4f1c-ae74-8f45c22bc8f8 cc7cd2c7906dd9eb37482d04303bc0f2 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.miRNA-Seq.S14_L006_R1.T C3N-04982 LSCC miRNA-Seq tumor CPT0334320009 201209_UNC32-K00270_0265_AHJ55WBBXY_GGTAGC_S14_L006_R1_001.unaln.bam 307441852 BAM S14_L006_R1 submitted_unaligned CPTAC3 9b16e7a3-ef9f-4349-a9bc-30a4ac66a3a3 7ef9eab7e7f7731a3c2dca49bd911e22 {"aliquot_tag": "ALQ_de02d992", "sample": "S14", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.miRNA-Seq.S19_L006_R1.A C3N-04982 LSCC miRNA-Seq tissue_normal CPT0334340009 201209_UNC32-K00270_0265_AHJ55WBBXY_TCCCGA_S19_L006_R1_001.unaln.bam 221058155 BAM S19_L006_R1 submitted_unaligned CPTAC3 9ac35ebb-9785-42a7-b085-df1d19f2a8dc 13e0f5f55741c3fa26fb007a88eaf395 {"aliquot_tag": "ALQ_51422c32", "sample": "S19", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.miRNA-Seq.T.hg38 C3N-04982 LSCC miRNA-Seq tumor CPT0334320009 9072b24d-8a42-464e-9d45-b908cb718eed_mirnaseq_gdc_realn.bam 347790561 BAM harmonized CPTAC3 9e9590b4-152a-4943-8b36-6b9e23872e60 2cabc753dfbf1d5d344d4627b2fa4ace {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.RNA-Seq.chimeric.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.chimeric.gdc_realn.bam 386692119 BAM chimeric harmonized CPTAC3 f6a1f257-a7b4-4efe-8ab6-58ff36a06621 bbf65a62107049da3bc2a8b32f811c69 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.RNA-Seq.chimeric.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.chimeric.gdc_realn.bam 143124640 BAM chimeric harmonized CPTAC3 68700fde-a670-4dce-bf54-c9fb2d0dbef0 83e7ad53b0bb23df06bcde6ed98235e5 {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.RNA-Seq.genomic.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.genomic.gdc_realn.bam 9581158464 BAM genomic harmonized CPTAC3 f745803a-bf46-4597-91cb-ec8623157ccd 1b3805da33c9954ca14c1dbcf9a9b013 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.RNA-Seq.genomic.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.genomic.gdc_realn.bam 5896144523 BAM genomic harmonized CPTAC3 3e58610e-b1ab-4c22-a2fe-b84c003cbe9a c0d9398541484cbe39134b63c276b132 {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.RNA-Seq.S18_L005_R1.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3026911232 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 8ca5fa21-48e5-4126-a630-8d5d067831e7 14da63ac1a7f18357d25a1410aaf7d12 {"aliquot_tag": "ALQ_de02d992", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.RNA-Seq.S18_L005_R2.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 7a3a4e2ea80c5e2f48867a477d8853bc {"aliquot_tag": "ALQ_de02d992", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.RNA-Seq.S6_L002_R1.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4757949761 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 60b48130-b657-492c-9839-2a8236f5b752 cd413147711efc8cc25a401e3a71504e {"aliquot_tag": "ALQ_51422c32", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.RNA-Seq.S6_L002_R2.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 5297286576 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 9b338fa6-70b4-4384-a81e-302d3d66da03 d2d9b88d8064446462e8166df0fe62b3 {"aliquot_tag": "ALQ_51422c32", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.RNA-Seq.transcriptome.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.transcriptome.gdc_realn.bam 11622572154 BAM transcriptome harmonized CPTAC3 f5595dea-7b3f-450f-8dde-3fb286778235 99f64b749e5c06c5294d1cc8fb26eae9 {"aliquot_tag": "ALQ_51422c32", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.RNA-Seq.transcriptome.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.transcriptome.gdc_realn.bam 9246187410 BAM transcriptome harmonized CPTAC3 c4a21c49-12f1-496b-8dfc-a2d56536bca1 a4d7e8d3246274a2a5ab37ca91d7ec8f {"aliquot_tag": "ALQ_de02d992", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.WGS.N C3N-04982 LSCC WGS blood_normal CPT0334410002 CPT0334410002.WholeGenome.RP-2158.bam 24182065112 BAM submitted_aligned CPTAC3 08fa0a40-cbfe-42d6-8b88-e17c4b75d461 f077b3b5231e04b08d449bb798b37058 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04982.WGS.N.hg38 C3N-04982 LSCC WGS blood_normal CPT0334410002 b7d87f7b-30be-4cde-a718-3d1eff3a47e2_wgs_gdc_realn.bam 72893984984 BAM harmonized CPTAC3 4ba0591d-3c73-4e01-99e4-7f123807a869 dc6f67b5593105d0d3bb9919843c2e67 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04982.WGS.T C3N-04982 LSCC WGS tumor CPT0334320006 CPT0334320006.WholeGenome.RP-2158.bam 26185475216 BAM submitted_aligned CPTAC3 b2cc65c4-7c17-43c9-9c61-0f46e6ca171f 2ddf4706a64c57df05eb7c9348ab1050 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.WGS.T.hg38 C3N-04982 LSCC WGS tumor CPT0334320006 df5e7fb1-5cde-462a-8e99-57d1c1e55bbb_wgs_gdc_realn.bam 78144318605 BAM harmonized CPTAC3 01af4614-efe4-41bf-9563-42307c7ad70c 840aaf7e122e9ed2af9900943a73ffb0 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.WXS.A C3N-04982 LSCC WXS tissue_normal CPT0334340006 CPT0334340006.WholeExome.RP-1303.bam 17565628043 BAM submitted_aligned CPTAC3 3f295d98-dc74-4237-a236-fc4dd6a1c619 8ff98287c0cde79b87f5e63eb3f84bc4 {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04982.WXS.A.hg38 C3N-04982 LSCC WXS tissue_normal CPT0334340006 23d9becf-10ce-414b-affc-a27644501eb5_wxs_gdc_realn.bam 24081176494 BAM harmonized CPTAC3 7db3a3b1-7f4b-4688-b920-4900c0c5fe57 61e5e8ec7c0f40d82ade0c7393f765c5 {"aliquot_tag": "ALQ_c1fd31a3", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-04982.WXS.N C3N-04982 LSCC WXS blood_normal CPT0334410002 CPT0334410002.WholeExome.RP-1303.bam 26479139402 BAM submitted_aligned CPTAC3 260542e7-bae2-4251-91b2-ad3af9b63445 9c9f2a764c30d838fb5162dc5fd84574 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-04982.WXS.N.hg38 C3N-04982 LSCC WXS blood_normal CPT0334410002 b7d87f7b-30be-4cde-a718-3d1eff3a47e2_wxs_gdc_realn.bam 36861261658 BAM harmonized CPTAC3 78407693-79ae-4e74-b61f-ad721e971cbd a04d88d55ef93ab6bfd5c68d7d5761c2 {"aliquot_tag": "ALQ_13754a72", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-04982.WXS.T C3N-04982 LSCC WXS tumor CPT0334320006 CPT0334320006.WholeExome.RP-1303.bam 24071158645 BAM submitted_aligned CPTAC3 003dbe5b-ccdd-41d0-a4f6-d4aa0749cdc6 25ac1dc10d62ab1f27c5c2f7e31b8080 {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04982.WXS.T.hg38 C3N-04982 LSCC WXS tumor CPT0334320006 df5e7fb1-5cde-462a-8e99-57d1c1e55bbb_wxs_gdc_realn.bam 33022672302 BAM harmonized CPTAC3 6bf0ede5-e248-4e4c-bfef-dd689c9a954d 8e9cf365132aa64e488515fa7b4365cb {"aliquot_tag": "ALQ_4ebdc403", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05039.MethArray.Green.T C3N-05039 GBM Methylation_Array tumor CPT0375550007 205555380179_R08C01_Grn.idat 13677960 IDAT Green NA CPTAC3 0e2b16e4-ac2d-4ed4-a73a-c9a407bba896 c4146bd86e684fdcdf4f91a508d4839a {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.MethArray.Red.T C3N-05039 GBM Methylation_Array tumor CPT0375550007 205555380179_R08C01_Red.idat 13677960 IDAT Red NA CPTAC3 b1dab8f3-b85c-4582-a2f8-cd872fd00719 656a7312aebdb2491cc1e26a46887cd6 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.miRNA-Seq.S1_L006_R1.T C3N-05039 GBM miRNA-Seq tumor CPT0375550010 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTGAT_S1_L006_R1_001.unaln.bam 339916115 BAM S1_L006_R1 submitted_unaligned CPTAC3 216cd2e0-5dd6-45e7-a80b-229e2904b2b5 5e90186684cd07c0f67c25f6e35794a7 {"aliquot_tag": "ALQ_f8816a34", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.miRNA-Seq.T.hg38 C3N-05039 GBM miRNA-Seq tumor CPT0375550010 9b54f050-596d-4330-a614-d4114efbc541_mirnaseq_gdc_realn.bam 368781524 BAM harmonized CPTAC3 83cb7915-658a-43ea-8a36-9282a80da07a f466bcb01db3086432a8bd31c48604a9 {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.RNA-Seq.chimeric.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.chimeric.gdc_realn.bam 318784757 BAM chimeric harmonized CPTAC3 b33c24d0-d7a5-40b6-98ee-abdc68a5f77d d75ce2cbc5ec1d960db55b49c074bf82 {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.RNA-Seq.genomic.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.genomic.gdc_realn.bam 8268764824 BAM genomic harmonized CPTAC3 cee0c9b9-adef-4af8-8563-e1729eb1b26e 344b471bd97603b9ae8ce8ef7bd0bb5d {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.RNA-Seq.S17_L005_R1.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 6ab25656-a131-45dd-8109-b25ff504557b 217e7c4eb1e1aec3d0823ff9fadd0323 {"aliquot_tag": "ALQ_f8816a34", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.RNA-Seq.S17_L005_R2.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 65389fb7-97ce-4735-bc64-6092b9173a2a 21cc7ed3109046088483706b8b9ac3d7 {"aliquot_tag": "ALQ_f8816a34", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.RNA-Seq.transcriptome.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.transcriptome.gdc_realn.bam 12531294067 BAM transcriptome harmonized CPTAC3 ada7b210-accb-4645-8e6c-074e32bb35de 6a13445f9e53e824494acdc8b4859d49 {"aliquot_tag": "ALQ_f8816a34", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.WGS.N C3N-05039 GBM WGS blood_normal CPT0375610002 CPT0375610002.WholeGenome.RP-2158.bam 23424241762 BAM submitted_aligned CPTAC3 a018a950-4966-4f64-a4ef-d417ddf5ca0a c74d72c2dccb0f5d16bb3476728303bd {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05039.WGS.N.hg38 C3N-05039 GBM WGS blood_normal CPT0375610002 e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wgs_gdc_realn.bam 69461606241 BAM harmonized CPTAC3 05fa37fb-0df8-498f-8f7f-14f9a735c215 ed160f977b663eea7389ee63244699d5 {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05039.WGS.T C3N-05039 GBM WGS tumor CPT0375550007 CPT0375550007.WholeGenome.RP-2158.bam 27433556193 BAM submitted_aligned CPTAC3 4428d05f-66c0-4500-b0d6-b31bf646ba74 855321130f5c1c0df497900fae841dd0 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.WGS.T.hg38 C3N-05039 GBM WGS tumor CPT0375550007 fe17632c-e4bd-4c42-aa43-255206b1a97b_wgs_gdc_realn.bam 82840854167 BAM harmonized CPTAC3 03e5daf7-cc04-4a52-855a-8f776d8655a5 7450cf9066ae10fdb293bccb319ee974 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.WXS.N C3N-05039 GBM WXS blood_normal CPT0375610002 CPT0375610002.WholeExome.RP-1303.bam 29288445996 BAM submitted_aligned CPTAC3 887088a7-de8b-43bc-af96-5ffb1dd72a0d c0e15167765168d0425947c5bd894f42 {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05039.WXS.N.hg38 C3N-05039 GBM WXS blood_normal CPT0375610002 e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wxs_gdc_realn.bam 41040654784 BAM harmonized CPTAC3 b528bf8e-bae9-4d91-8d62-1746ba1a1ac0 6d00bd229849df2394c9c68f65f15b1a {"aliquot_tag": "ALQ_7c80ee37", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05039.WXS.T C3N-05039 GBM WXS tumor CPT0375550007 CPT0375550007.WholeExome.RP-1303.bam 23372925491 BAM submitted_aligned CPTAC3 2c3692de-a4a4-42ad-b89b-279b35f07e0f 7bf242a732e39af260b4d1a2e25fbd42 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05039.WXS.T.hg38 C3N-05039 GBM WXS tumor CPT0375550007 fe17632c-e4bd-4c42-aa43-255206b1a97b_wxs_gdc_realn.bam 32616896013 BAM harmonized CPTAC3 9b5da686-f797-4f86-b29f-790686e55120 a5980997344df3b781c6fb2f966f68d9 {"aliquot_tag": "ALQ_7ffeced6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05069.RNA-Seq.chimeric.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.chimeric.gdc_realn.bam 45321058 BAM chimeric harmonized CPTAC3 932fe7f4-4b27-4577-a75b-b162b0bb54c5 576f0cfe68d6c2fd8940e1675a552965 {"aliquot_tag": "ALQ_f7e74951", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05069.RNA-Seq.genomic.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.genomic.gdc_realn.bam 5587340062 BAM genomic harmonized CPTAC3 c9b9d47c-b924-4e5f-8361-dbf880e6a99b 2c71530765e85adc9ade5de7a48b5543 {"aliquot_tag": "ALQ_f7e74951", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05069.RNA-Seq.S1_R1.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R1_001.fastq.gz 3349966026 FASTQ S1_R1 submitted_unaligned CPTAC3 133e5128-d1a6-494f-8057-5664f0e6290e 3f65598fdab94e045c04dec386068a3e {"aliquot_tag": "ALQ_f7e74951", "sample": "S1", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05069.RNA-Seq.S1_R2.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R2_001.fastq.gz 3492595143 FASTQ S1_R2 submitted_unaligned CPTAC3 579f7c4f-e670-42c0-85e1-6d60b1ea8e41 24621d200b6d0e16fc460e4943d3b67b {"aliquot_tag": "ALQ_f7e74951", "sample": "S1", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05069.RNA-Seq.transcriptome.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.transcriptome.gdc_realn.bam 4097890065 BAM transcriptome harmonized CPTAC3 83d7fa9f-f552-4c3d-9fa8-2b638a926ed6 34ea3549f9411cefc56f9bb25aed2d54 {"aliquot_tag": "ALQ_f7e74951", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.MethArray.Green.T C3N-05078 LSCC Methylation_Array tumor CPT0313250006 204372030072_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0c5941e4-5d8b-4982-8232-976f7da14e88 71b4df69a73b6f9a2a46730bd40bdbbf {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.MethArray.Red.T C3N-05078 LSCC Methylation_Array tumor CPT0313250006 204372030072_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 d685cbb0-0bc3-40aa-b0e4-a8c665b49e05 312d5c4d1ceb0f8b2e71d36c9901b104 {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.miRNA-Seq.S13_L008_R1.T C3N-05078 LSCC miRNA-Seq tumor CPT0313250009 200224_UNC31-K00269_0267_AHC722BBXY_AGTCAA_S13_L008_R1_001.unaln.bam 173285033 BAM S13_L008_R1 submitted_unaligned CPTAC3 b3646701-9a49-4df4-be37-c3a957a369e3 536bd3440d3fbbc05d480d627cc3f141 {"aliquot_tag": "ALQ_20fcefd4", "sample": "S13", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.miRNA-Seq.T.hg38 C3N-05078 LSCC miRNA-Seq tumor CPT0313250009 752c3d6f-ac79-4792-88f3-cc9159fe73db_mirnaseq_gdc_realn.bam 200095100 BAM harmonized CPTAC3 03d24c1d-c3df-4a47-b78a-4706f7c0a947 cbb3f952207203f3d5f3a7bed6d53031 {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.RNA-Seq.chimeric.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.chimeric.gdc_realn.bam 36509504 BAM chimeric harmonized CPTAC3 0c2fc4fa-4fd9-409d-a5ba-42b1803e3ecf 5cedc3fb598af53ef8e389f47c285bc9 {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.RNA-Seq.genomic.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.genomic.gdc_realn.bam 9151158328 BAM genomic harmonized CPTAC3 4fe71196-6dd2-463c-904e-d71773063f2a 01c445a80cf485e5d5e6aa53ebfdd8f4 {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.RNA-Seq.S13_L004_R1.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R1_001.fastq.gz 4598103896 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 7b355ee0-226f-49a8-8e17-2063e5db5be2 6a312d28221324009efbb8bc04c12bd2 {"aliquot_tag": "ALQ_20fcefd4", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.RNA-Seq.S13_L004_R2.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R2_001.fastq.gz 4948992963 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 b207acd5-27e6-4f5e-ab9a-7e1188acef4c 0a53af8cf611af23e5524a7a36e2800d {"aliquot_tag": "ALQ_20fcefd4", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.RNA-Seq.transcriptome.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.transcriptome.gdc_realn.bam 13025134872 BAM transcriptome harmonized CPTAC3 af359602-81e7-4cfc-96ff-daea26d26f9e c0953d561bfc94a80b207c71ef6a19df {"aliquot_tag": "ALQ_20fcefd4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.WGS.N C3N-05078 LSCC WGS blood_normal CPT0313270002 CPT0313270002.WholeGenome.RP-2158.bam 25476411907 BAM submitted_aligned CPTAC3 e64690b9-1ba0-4053-9664-0ed131d25e4e 723f9ba41a473f4c9541d6ec1073c1c8 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05078.WGS.N.hg38 C3N-05078 LSCC WGS blood_normal CPT0313270002 0f680ce2-70af-4ffd-a3de-f38fd6d35eb2_wgs_gdc_realn.bam 75564564438 BAM harmonized CPTAC3 aaca2d93-2662-44b2-b37b-e819c5a0d346 7441a14e68f85020222639949a63a972 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05078.WGS.T C3N-05078 LSCC WGS tumor CPT0313250006 CPT0313250006.WholeGenome.RP-2158.bam 22801546627 BAM submitted_aligned CPTAC3 d7d6fa47-c740-429e-b4e6-cb93f424e743 d30fd66a44eb18fb8d5f3143026e63ba {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.WGS.T.hg38 C3N-05078 LSCC WGS tumor CPT0313250006 81268520-0222-48f1-8b38-865b7d274018_wgs_gdc_realn.bam 65095127623 BAM harmonized CPTAC3 ecbfef91-e2f0-4b29-926b-a3611f97331f f25bfc73faedd8252e1d0e9c3f48acf1 {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.WXS.N C3N-05078 LSCC WXS blood_normal CPT0313270002 CPT0313270002.WholeExome.RP-1303.bam 20578360610 BAM submitted_aligned CPTAC3 b7d5c2c1-8528-445d-9edf-d9056a313599 670b085147ae24a8a58af9b6d20882d3 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05078.WXS.N.hg38 C3N-05078 LSCC WXS blood_normal CPT0313270002 0f680ce2-70af-4ffd-a3de-f38fd6d35eb2_wxs_gdc_realn.bam 28234499958 BAM harmonized CPTAC3 1660c3c8-7b4c-4e1b-a8ca-a45d991f0163 e10813ed3bbf9ba90732b45e2e4bb9c3 {"aliquot_tag": "ALQ_cdee653c", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05078.WXS.T C3N-05078 LSCC WXS tumor CPT0313250006 CPT0313250006.WholeExome.RP-1303.bam 18294804830 BAM submitted_aligned CPTAC3 3758af49-c42a-43a2-a67b-726aa658e836 7aa0b2cd399de1200ed95fc64aa00d7b {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05078.WXS.T.hg38 C3N-05078 LSCC WXS tumor CPT0313250006 81268520-0222-48f1-8b38-865b7d274018_wxs_gdc_realn.bam 25072574120 BAM harmonized CPTAC3 feb4a2e8-3251-4a2f-82a0-2f7ecf12d074 b59f652b6899bda2d65d1ca89253284d {"aliquot_tag": "ALQ_b043f245", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.MethArray.Green.A C3N-05079 LSCC Methylation_Array tissue_normal CPT0313290006 204372030015_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 97021d71-211b-4710-9272-ffeaf0541dff 54ff7320fa908ac1c2b3cc98e9831584 {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.MethArray.Green.T C3N-05079 LSCC Methylation_Array tumor CPT0313280006 204372030014_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 6e036803-1d9b-485d-a3a6-09cd0c2735cc 95deca3f5dfb0ed57853dd6f619338b0 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.MethArray.Red.A C3N-05079 LSCC Methylation_Array tissue_normal CPT0313290006 204372030015_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 0bdcc1b8-e5a9-4511-b9d0-14dbdb0b70b7 fc648b8f5c973a9f91600a9283f9786a {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.MethArray.Red.T C3N-05079 LSCC Methylation_Array tumor CPT0313280006 204372030014_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 08957da0-8bba-4dc5-85ef-82699769ae8a feda12be01b612a6b346862a70253eac {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.miRNA-Seq.A.hg38 C3N-05079 LSCC miRNA-Seq tissue_normal CPT0313290009 898fa3e8-e46f-4ac8-b2d2-9c9698b7deb7_mirnaseq_gdc_realn.bam 303461761 BAM harmonized CPTAC3 8b28f514-b3b9-4107-b077-d82a26dfb180 b3472dceec668303b0d856ffab3b4bac {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.miRNA-Seq.S14_L008_R1.T C3N-05079 LSCC miRNA-Seq tumor CPT0313280009 200224_UNC31-K00269_0267_AHC722BBXY_AGTTCC_S14_L008_R1_001.unaln.bam 204307764 BAM S14_L008_R1 submitted_unaligned CPTAC3 00e7ab76-7ea4-4b8a-8a84-483719bdb7d9 f848d0c7db846aff188a6e8837d8266c {"aliquot_tag": "ALQ_d86c2b65", "sample": "S14", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.miRNA-Seq.S9_L005_R1.A C3N-05079 LSCC miRNA-Seq tissue_normal CPT0313290009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGATGT_S9_L005_R1_001.unaln.bam 277897229 BAM S9_L005_R1 submitted_unaligned CPTAC3 db018ff5-134a-430c-87eb-8058a0ce0443 0365aff51ea74cb6106b2dffbfe51326 {"aliquot_tag": "ALQ_e50c02d5", "sample": "S9", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.miRNA-Seq.T.hg38 C3N-05079 LSCC miRNA-Seq tumor CPT0313280009 183f2d4c-8ad9-4d96-8cb8-8ae2bab551ba_mirnaseq_gdc_realn.bam 224251650 BAM harmonized CPTAC3 ae68948d-311c-4f27-aded-43f77773e2ff 2145971f4011d47da589395c52d7b5fa {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.RNA-Seq.chimeric.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.chimeric.gdc_realn.bam 30706269 BAM chimeric harmonized CPTAC3 fdb05485-e9b6-406a-8f2a-2e31dfc86737 31f35cdd024532b7d4bd8dee2d161676 {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.RNA-Seq.chimeric.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.chimeric.gdc_realn.bam 32671820 BAM chimeric harmonized CPTAC3 7df01112-84a6-4d1d-84c0-bb41cacdabd6 f33d6abc9ef3878e432659478ceabfc0 {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.RNA-Seq.genomic.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.genomic.gdc_realn.bam 7843889901 BAM genomic harmonized CPTAC3 eae3dc40-746c-455e-87d8-dba7aae0b280 a72f00f7f46b8321d4e3507c54e8289a {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.RNA-Seq.genomic.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.genomic.gdc_realn.bam 7641407302 BAM genomic harmonized CPTAC3 e4c7eb31-c1b7-4eab-8d65-e24802aaf1e0 d0a2f5deb19384da24e731e5a906e301 {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.RNA-Seq.S14_L004_R1.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R1_001.fastq.gz 3676782114 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 2ed19366-78ac-416b-9c74-585b2c05069d b6542365b97ae4ccbc910dd7189d5b76 {"aliquot_tag": "ALQ_d86c2b65", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.RNA-Seq.S14_L004_R2.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R2_001.fastq.gz 3908549524 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 b52bc76f-30d1-40fc-a3d0-c30e7c35fa05 e9a049f694bac4b45937c372c5bd59f5 {"aliquot_tag": "ALQ_d86c2b65", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.RNA-Seq.S2_L005_R1.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R1_001.fastq.gz 4002383357 FASTQ S2_L005_R1 submitted_unaligned CPTAC3 f049a6c4-3d7d-4ef7-8b6c-388e6e91cbeb defa00bd94225a35335802ca666bc3d4 {"aliquot_tag": "ALQ_e50c02d5", "sample": "S2", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.RNA-Seq.S2_L005_R2.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R2_001.fastq.gz 4136253059 FASTQ S2_L005_R2 submitted_unaligned CPTAC3 f24ce64f-02cc-40a6-a3ea-150c7dd88dae e1fd5408f037976109d4025bde5aa1f2 {"aliquot_tag": "ALQ_e50c02d5", "sample": "S2", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.RNA-Seq.transcriptome.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.transcriptome.gdc_realn.bam 10085239384 BAM transcriptome harmonized CPTAC3 2b474d6b-cd36-46e8-9b92-16f03852d266 0b18f78199887c2850ff5e0534e3da84 {"aliquot_tag": "ALQ_e50c02d5", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.RNA-Seq.transcriptome.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.transcriptome.gdc_realn.bam 9978722154 BAM transcriptome harmonized CPTAC3 223624f8-75ef-45a0-80fb-9c09d471c9ed daa35937df0e1a900266b352a8b7b508 {"aliquot_tag": "ALQ_d86c2b65", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.WGS.N C3N-05079 LSCC WGS blood_normal CPT0313300002 CPT0313300002.WholeGenome.RP-2158.bam 21731961742 BAM submitted_aligned CPTAC3 2d317f20-578a-4417-9c62-9e1610973ac0 9e94f25c9b3a13eeb1fd48fd3237099d {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05079.WGS.N.hg38 C3N-05079 LSCC WGS blood_normal CPT0313300002 cc6e30e4-a477-48c7-b201-528211f3d5df_wgs_gdc_realn.bam 65080632447 BAM harmonized CPTAC3 77f97a94-18b9-4cb0-8b97-498eb2a9b441 ec8ff425188cb19f5281626876224c89 {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05079.WGS.T C3N-05079 LSCC WGS tumor CPT0313280006 CPT0313280006.WholeGenome.RP-2158.bam 24614136960 BAM submitted_aligned CPTAC3 a82cf098-ab13-4cd1-ae24-cff89ea736e3 06bdcfd8363d42f4b3e4439e0276ea4f {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.WGS.T.hg38 C3N-05079 LSCC WGS tumor CPT0313280006 7c9f892f-1bd3-492d-bae7-09c323a90ab8_wgs_gdc_realn.bam 72412570414 BAM harmonized CPTAC3 191a2a9b-da05-4186-8e73-a43dad489dcb be1448153309ecea7087da7860c85bb9 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.WXS.A C3N-05079 LSCC WXS tissue_normal CPT0313290006 CPT0313290006.WholeExome.RP-1303.bam 36965491616 BAM submitted_aligned CPTAC3 582baa68-d439-4451-bd72-612fb5f1e9ed e8417787cd87bc02a2fef4ee1c6fb894 {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.WXS.A.hg38 C3N-05079 LSCC WXS tissue_normal CPT0313290006 21d29385-d8e0-4637-9b5b-34e4a728f8ec_wxs_gdc_realn.bam 51131619209 BAM harmonized CPTAC3 ebd0b266-0091-46ec-85f4-6425d7bf8a4c 1d651cf396e19386d3f33cba646b59ce {"aliquot_tag": "ALQ_75b31f44", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05079.WXS.N C3N-05079 LSCC WXS blood_normal CPT0313300002 CPT0313300002.WholeExome.RP-1303.bam 24320660645 BAM submitted_aligned CPTAC3 c79deaae-9a05-447a-b745-4fed2ce27b81 175a230cda408fdd318908109d2a5249 {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05079.WXS.N.hg38 C3N-05079 LSCC WXS blood_normal CPT0313300002 cc6e30e4-a477-48c7-b201-528211f3d5df_wxs_gdc_realn.bam 33941807249 BAM harmonized CPTAC3 7627660e-7128-4103-aa9e-74ee5aa1ceb2 4c41a98bafcfcfa7a463668959f66e91 {"aliquot_tag": "ALQ_b4926a89", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05079.WXS.T C3N-05079 LSCC WXS tumor CPT0313280006 CPT0313280006.WholeExome.RP-1303.bam 19776372856 BAM submitted_aligned CPTAC3 fce6011a-c75a-4e4a-9afc-5c36ae9c4698 9930ef3d61077859c44c358ec6b23867 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05079.WXS.T.hg38 C3N-05079 LSCC WXS tumor CPT0313280006 7c9f892f-1bd3-492d-bae7-09c323a90ab8_wxs_gdc_realn.bam 27105783152 BAM harmonized CPTAC3 caf98681-805e-41ab-af59-842c116811bb d70b9de9301743f6e48e20254070fc48 {"aliquot_tag": "ALQ_48d336f4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.MethArray.Green.T C3N-05080 LSCC Methylation_Array tumor CPT0321640006 204372030085_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 907f452c-a0db-4fbc-a58d-7188ae512cf1 367be7a29328b334dc32de14b9b8c7fd {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.MethArray.Red.T C3N-05080 LSCC Methylation_Array tumor CPT0321640006 204372030085_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 252d6d54-d5ce-4a9c-bfb8-a9d3a6c95c5e 7123562e6f9dcf5643387bdd0b67c494 {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.miRNA-Seq.S41_L007_R1.T C3N-05080 LSCC miRNA-Seq tumor CPT0321640009 200224_UNC31-K00269_0267_AHC722BBXY_GACGAC_S41_L007_R1_001.unaln.bam 234621804 BAM S41_L007_R1 submitted_unaligned CPTAC3 d41874e9-10da-4c02-94f0-03b3caee5931 2df4bc97021a5d0f9f4d5cad0fa0d585 {"aliquot_tag": "ALQ_9f1d92b8", "sample": "S41", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.miRNA-Seq.T.hg38 C3N-05080 LSCC miRNA-Seq tumor CPT0321640009 73f1bc52-433a-4a9b-a3fd-37d871f3dfd0_mirnaseq_gdc_realn.bam 260564259 BAM harmonized CPTAC3 2f921283-151e-4282-a1bf-16c4226cb0b8 9759d158dad57a31e4eb7a404616d36e {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.RNA-Seq.chimeric.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.chimeric.gdc_realn.bam 43479221 BAM chimeric harmonized CPTAC3 ed66ae15-8b54-4070-b523-69b99cf71885 3915f2a9b1a174885b86b91af8266f39 {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.RNA-Seq.genomic.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.genomic.gdc_realn.bam 10726704439 BAM genomic harmonized CPTAC3 607682c6-3c33-4684-ad6e-5f1f82518efa 5b1d6b9173cb8b04cc6fc00bf826b50e {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.RNA-Seq.S9_L003_R1.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R1_001.fastq.gz 5320575999 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 b5efa31d-accd-4914-9142-7e7b1a89170e 51b3b22e41e48c08e5639527dcf76398 {"aliquot_tag": "ALQ_9f1d92b8", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.RNA-Seq.S9_L003_R2.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R2_001.fastq.gz 5656817918 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 a7e0434d-6689-4831-b5ff-0df17c1f3191 b1a505b0feb29a82f72fd98ccd236cd5 {"aliquot_tag": "ALQ_9f1d92b8", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.RNA-Seq.transcriptome.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.transcriptome.gdc_realn.bam 14941845517 BAM transcriptome harmonized CPTAC3 5ad4b6e4-5d69-4165-8db9-9144d22d7623 f8a41f8ef9bc349076edceb0f084f6f6 {"aliquot_tag": "ALQ_9f1d92b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.WGS.N C3N-05080 LSCC WGS blood_normal CPT0321670002 CPT0321670002.WholeGenome.RP-2158.bam 32117416863 BAM submitted_aligned CPTAC3 1065f29d-90b1-4b01-80a4-bc728f1f4480 e9b11e9fa5b8c48977f4905232e86df6 {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05080.WGS.N.hg38 C3N-05080 LSCC WGS blood_normal CPT0321670002 7ab7860a-416f-40a9-ad13-90c49c392507_wgs_gdc_realn.bam 94869815892 BAM harmonized CPTAC3 fede5ded-dfdb-46d0-a96c-db681ead09da e9262813c7f03216fdb139f28853b5e6 {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05080.WGS.T C3N-05080 LSCC WGS tumor CPT0321640006 CPT0321640006.WholeGenome.RP-2158.bam 23242180231 BAM submitted_aligned CPTAC3 5dbde3eb-5a93-4395-93c2-bff51e805c81 7ab44b26d1dfbea222fc3d631b677fbf {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.WGS.T.hg38 C3N-05080 LSCC WGS tumor CPT0321640006 9e4c78c3-fe39-47ab-8ede-e7a9843de8ae_wgs_gdc_realn.bam 68949469409 BAM harmonized CPTAC3 188683b2-4b05-4ba7-af25-da55de8055fe de07f5ec2c7f23b84133e3a91e035543 {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.WXS.N C3N-05080 LSCC WXS blood_normal CPT0321670002 CPT0321670002.WholeExome.RP-1303.bam 22201659914 BAM submitted_aligned CPTAC3 058b9ed9-7b8d-4cb6-bbc6-9d3edbe74a8e 3b209909315908943812243c1e575a49 {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05080.WXS.N.hg38 C3N-05080 LSCC WXS blood_normal CPT0321670002 7ab7860a-416f-40a9-ad13-90c49c392507_wxs_gdc_realn.bam 30013226366 BAM harmonized CPTAC3 5d92d6cb-0622-4376-871d-69b6978df9d8 4ab9f4704a3ab4ff0715871cde121fcd {"aliquot_tag": "ALQ_4f6f31e0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05080.WXS.T C3N-05080 LSCC WXS tumor CPT0321640006 CPT0321640006.WholeExome.RP-1303.bam 31591593862 BAM submitted_aligned CPTAC3 5bf69ea5-7618-4046-9487-4f281533b64d fe3538fe2ed54323e454975b131583d8 {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05080.WXS.T.hg38 C3N-05080 LSCC WXS tumor CPT0321640006 9e4c78c3-fe39-47ab-8ede-e7a9843de8ae_wxs_gdc_realn.bam 43743988820 BAM harmonized CPTAC3 5573115d-3932-40c3-aa09-674bf155232d ad98f2b4d26bafe4b7b28b8d46dcee5d {"aliquot_tag": "ALQ_fa28f29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.MethArray.Green.A C3N-05085 LSCC Methylation_Array tissue_normal CPT0313370009 204930640122_R01C01_Grn.idat 13677965 IDAT Green NA CPTAC3 7ab13a0d-088c-4885-a0b9-84d9d884e41f 87e979e14084872fbe6228796711b37f {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.MethArray.Green.T C3N-05085 LSCC Methylation_Array tumor CPT0384250006 204930630111_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 694cc450-1e56-407c-aa8c-49580de2c17e 1b3b20168a810c2ea0cd2f949b1d277b {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.MethArray.Red.A C3N-05085 LSCC Methylation_Array tissue_normal CPT0313370009 204930640122_R01C01_Red.idat 13677965 IDAT Red NA CPTAC3 75e701e1-9c63-4970-ba94-6ce81d151af1 4d9bc4f01c35c76ed1984d61fbc51d75 {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.MethArray.Red.T C3N-05085 LSCC Methylation_Array tumor CPT0384250006 204930630111_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 7d63ec11-8ba2-49ee-b488-f733ef26917f e2bafa6916f49e7eca0cb5c8c0372907 {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.miRNA-Seq.A.hg38 C3N-05085 LSCC miRNA-Seq tissue_normal CPT0313370006 58d4a96f-353e-4ee3-ab89-a766b95baddc_mirnaseq_gdc_realn.bam 212668176 BAM harmonized CPTAC3 8135f53e-468f-406b-9d30-c37913d76ee9 b8df2a3e8c8ce1890c920f39b30eda61 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.miRNA-Seq.S29_L007_R1.T C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 201209_UNC32-K00270_0265_AHJ55WBBXY_CTTGTA_S29_L007_R1_001.unaln.bam 265183032 BAM S29_L007_R1 submitted_unaligned CPTAC3 caca83ea-6ccb-4748-9a67-8f571a34199b 5ae07305fea0b299591e28fbbf8072c9 {"aliquot_tag": "ALQ_fa14ca71", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.miRNA-Seq.S5_L006_R1.A C3N-05085 LSCC miRNA-Seq tissue_normal CPT0313370006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAAAAG_S5_L006_R1_001.unaln.bam 194905287 BAM S5_L006_R1 submitted_unaligned CPTAC3 6e8c9e6e-fbe0-458d-aac2-0f5a07287d11 965920a6e72e7bb2e9f5466cf823ae6e {"aliquot_tag": "ALQ_1df7280", "sample": "S5", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.miRNA-Seq.T.hg38 C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 3f2cf33c-9f15-45a7-a205-58a1efb2011c_mirnaseq_gdc_realn.bam 285799429 BAM harmonized CPTAC3 cced8d3f-f594-4492-b53f-58f57348eb59 d993f618265558cc305ff64a1a9ad044 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.REP_5496184.WGS.N C3N-05085 LSCC WGS blood_normal CPT0405320002 CPT0405320002.WholeGenome.RP-2158.bam 25924162058 BAM submitted_aligned CPTAC3 1d116097-e964-4e1a-8137-0bc7c2d82b3b c1fe3ef5b481e0439096dec04de52c78 {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05085.REP_5496184.WGS.N.hg38 C3N-05085 LSCC WGS blood_normal CPT0405320002 791d45d2-e9bf-4c89-ab17-19af53f62009_wgs_gdc_realn.bam 75592846564 BAM harmonized CPTAC3 7ed0a11a-aff9-436c-88ce-3b5cdc834dd3 8732fe297ccfb82fa46096baff6cc2bc {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05085.REP_5496184.WXS.N C3N-05085 LSCC WXS blood_normal CPT0405320002 CPT0405320002.WholeExome.RP-1303.bam 20178949836 BAM submitted_aligned CPTAC3 3adc4457-fa35-48a2-b840-fb8eaf8896be 40296d7290a7bcb9012738d76b39df8d {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05085.REP_5496184.WXS.N.hg38 C3N-05085 LSCC WXS blood_normal CPT0405320002 791d45d2-e9bf-4c89-ab17-19af53f62009_wxs_gdc_realn.bam 27814762150 BAM harmonized CPTAC3 49dd8a0f-953c-4132-a09a-c1eddd5fd528 2869981e7a4b4ff34ff2759ca82aab09 {"aliquot_tag": "REP_5496184", "aliquot_annotation": "Duplicate item: Replacement DNA Aliquot ", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05085.RNA-Seq.chimeric.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.chimeric.gdc_realn.bam 438404072 BAM chimeric harmonized CPTAC3 e4089443-0221-4eba-b170-e65df5a5b8b0 5ac9e5d0f42308346f6244b8377be8f5 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.RNA-Seq.chimeric.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.chimeric.gdc_realn.bam 479257045 BAM chimeric harmonized CPTAC3 94f25820-e2e2-4996-859f-59b29d9ed510 89589ea7a10325d11af8d21f8c3bafa7 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.RNA-Seq.genomic.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.genomic.gdc_realn.bam 8034870087 BAM genomic harmonized CPTAC3 55123a6b-8493-457f-8c12-111b48370630 8c827fc6984c5fd0105939b1a84121a2 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.RNA-Seq.genomic.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.genomic.gdc_realn.bam 8666268565 BAM genomic harmonized CPTAC3 63991276-cbfd-4056-884e-6a90d09f6e4e 68d8e9808189abe340efc7e50ca3dfd1 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.RNA-Seq.S16_L004_R1.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R1_001.fastq.gz 4017555811 FASTQ S16_L004_R1 submitted_unaligned CPTAC3 8be64a46-9b70-4522-9aa3-3b130369eefd 1c0b8662223c4eed8dc911658545583c {"aliquot_tag": "ALQ_1df7280", "sample": "S16", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.RNA-Seq.S16_L004_R2.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R2_001.fastq.gz 4426414996 FASTQ S16_L004_R2 submitted_unaligned CPTAC3 5591ec5f-9a25-44cf-98a6-bab87a2d8707 d92e1d89d9fc564f303d7fc459ec2fe4 {"aliquot_tag": "ALQ_1df7280", "sample": "S16", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.RNA-Seq.S26_L007_R1.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 4419596280 FASTQ S26_L007_R1 submitted_unaligned CPTAC3 dfdbf338-11c7-4894-bacb-ff03cdedd459 fd61bb5f9863a8009b45e95c60cac2c1 {"aliquot_tag": "ALQ_fa14ca71", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.RNA-Seq.S26_L007_R2.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4829793715 FASTQ S26_L007_R2 submitted_unaligned CPTAC3 75d4f8b1-11c7-4a0f-beac-ba3ab8286040 1582dc7cddc90b715ac6b7b9b752b620 {"aliquot_tag": "ALQ_fa14ca71", "sample": "S26", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.RNA-Seq.transcriptome.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.transcriptome.gdc_realn.bam 9313298244 BAM transcriptome harmonized CPTAC3 8216c670-da05-4fe0-bb2b-5c319408b58f 2af9a673f824e216ff767eb05b5911b9 {"aliquot_tag": "ALQ_1df7280", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.RNA-Seq.transcriptome.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.transcriptome.gdc_realn.bam 12743935850 BAM transcriptome harmonized CPTAC3 ab3f20e8-e31f-48a0-ad8e-e0d20cd5b3af ea025bd3ffca5d6c4211b865718298b2 {"aliquot_tag": "ALQ_fa14ca71", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.WGS.T C3N-05085 LSCC WGS tumor CPT0384250006 CPT0384250006.WholeGenome.RP-2158.bam 21211133335 BAM submitted_aligned CPTAC3 412d0c18-22a9-4147-8e19-a25d81f8c0ae 762a2a11059fd33a495ac7f242c50247 {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.WGS.T.hg38 C3N-05085 LSCC WGS tumor CPT0384250006 9ebe410e-0b99-4c9e-9022-6a721a498140_wgs_gdc_realn.bam 64551572586 BAM harmonized CPTAC3 5cb9a5ae-237f-41b0-9f23-2b3189a6fccd a0cdc729537a58fba6013faa4c510bc9 {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.WXS.A C3N-05085 LSCC WXS tissue_normal CPT0313370009 CPT0313370009.WholeExome.RP-1303.bam 21481632964 BAM submitted_aligned CPTAC3 34e0b32d-349d-404d-a76d-4d4ed7a903a7 86cede8f1fe10904fe4b708d1b1f643f {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05085.WXS.A.hg38 C3N-05085 LSCC WXS tissue_normal CPT0313370009 1a21506d-9b28-460a-8c27-8d35cfd1e3ba_wxs_gdc_realn.bam 29561603186 BAM harmonized CPTAC3 a984f9dd-ba41-4d8c-8dfe-dad9a3ceb3ad bab73de8fca3cfd6a48f7f5ab06541db {"aliquot_tag": "ALQ_91606f11", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-05085.WXS.T C3N-05085 LSCC WXS tumor CPT0384250006 CPT0384250006.WholeExome.RP-1303.bam 18477809952 BAM submitted_aligned CPTAC3 38996dd7-ff1b-4837-a18f-4d15c318f6a3 ae0663dd14825e5ca0f5c8613c5e333a {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05085.WXS.T.hg38 C3N-05085 LSCC WXS tumor CPT0384250006 9ebe410e-0b99-4c9e-9022-6a721a498140_wxs_gdc_realn.bam 25516484420 BAM harmonized CPTAC3 15db306e-ca5c-4db6-8100-ecff5341b449 a49df19fbd583e7b51f3f9375b2dbf1d {"aliquot_tag": "ALQ_6aabd7e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05093.RNA-Seq.chimeric.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.chimeric.gdc_realn.bam 108199374 BAM chimeric harmonized CPTAC3 8cc546b6-b107-4511-b46a-0c8a8663f444 b850530d0996412ed65af505aeba80d6 {"aliquot_tag": "ALQ_6b1fb84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05093.RNA-Seq.genomic.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.genomic.gdc_realn.bam 6137995366 BAM genomic harmonized CPTAC3 d9cd0ab8-82c7-4b5e-9f9d-96f700cd2df0 5dbdea6d66440b4e5de66d48a2946cd3 {"aliquot_tag": "ALQ_6b1fb84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05093.RNA-Seq.S29_R1.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R1_001.fastq.gz 4607138936 FASTQ S29_R1 submitted_unaligned CPTAC3 fc8f4596-2078-4645-b283-341feb6454ec 4e3f0ec226c40496c00e83856dfe59ce {"aliquot_tag": "ALQ_6b1fb84", "sample": "S29", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05093.RNA-Seq.S29_R2.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R2_001.fastq.gz 4716010063 FASTQ S29_R2 submitted_unaligned CPTAC3 548edcb4-222d-4c8b-aa4c-f47f3dd7c251 4e18f91c2542417e6e4c60b96d52dd75 {"aliquot_tag": "ALQ_6b1fb84", "sample": "S29", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05093.RNA-Seq.transcriptome.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.transcriptome.gdc_realn.bam 3796501198 BAM transcriptome harmonized CPTAC3 29ae4afc-8f92-4786-89b2-140553d9b1c3 aa6fca900dc8cdc0f2a6893ab2bca858 {"aliquot_tag": "ALQ_6b1fb84", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05097.RNA-Seq.chimeric.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.chimeric.gdc_realn.bam 138631748 BAM chimeric harmonized CPTAC3 63160a48-2a46-4a53-b1bd-a0bec26aa935 293f0e525305d9c4ffe72d1a27e37065 {"aliquot_tag": "ALQ_7c71a8e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05097.RNA-Seq.genomic.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.genomic.gdc_realn.bam 7718870447 BAM genomic harmonized CPTAC3 7f1a8eb0-70f4-48a1-a4ea-4aff792ce136 7bc040f3c7333e433393f1e67badf222 {"aliquot_tag": "ALQ_7c71a8e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05097.RNA-Seq.S41_R1.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R1_001.fastq.gz 5042843421 FASTQ S41_R1 submitted_unaligned CPTAC3 bb58cb9f-4672-4053-ace5-6fe7465c8b95 bdc69d85697b37cac140769f2c33ab8c {"aliquot_tag": "ALQ_7c71a8e4", "sample": "S41", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05097.RNA-Seq.S41_R2.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R2_001.fastq.gz 5145457253 FASTQ S41_R2 submitted_unaligned CPTAC3 c7a4c4e6-bb74-4557-8063-da980cead096 f8bf6cd78d662182ab059c4fac06f92a {"aliquot_tag": "ALQ_7c71a8e4", "sample": "S41", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05097.RNA-Seq.transcriptome.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.transcriptome.gdc_realn.bam 4455931015 BAM transcriptome harmonized CPTAC3 93d8dcfc-2378-4adc-8f3c-d80ecd9472fa 70a708a3f195245114a1c11171702d76 {"aliquot_tag": "ALQ_7c71a8e4", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05098.RNA-Seq.chimeric.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.chimeric.gdc_realn.bam 49516818 BAM chimeric harmonized CPTAC3 211ed634-27f9-4b57-9a91-31d1cd6cf41d 7fa2a5e94f7a70560ca79875a651fd15 {"aliquot_tag": "ALQ_f3315d44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05098.RNA-Seq.genomic.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.genomic.gdc_realn.bam 6450987247 BAM genomic harmonized CPTAC3 b2ddc8da-5622-4239-ad1f-c8e8e9288832 362bb377693e66ffb7c674cf5b05214b {"aliquot_tag": "ALQ_f3315d44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05098.RNA-Seq.S43_R1.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R1_001.fastq.gz 3423487170 FASTQ S43_R1 submitted_unaligned CPTAC3 ea740f15-a73a-486b-9ba9-0658e445d549 70ddb46b677ee3cdfc3f4fe859177aad {"aliquot_tag": "ALQ_f3315d44", "sample": "S43", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05098.RNA-Seq.S43_R2.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R2_001.fastq.gz 3615603410 FASTQ S43_R2 submitted_unaligned CPTAC3 6b76e88e-71f4-44f5-9be6-03662e92b514 4b3c0df0155b9bfc1d4fe19a56db9823 {"aliquot_tag": "ALQ_f3315d44", "sample": "S43", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05098.RNA-Seq.transcriptome.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.transcriptome.gdc_realn.bam 4512430992 BAM transcriptome harmonized CPTAC3 cdcede9c-3811-4031-871b-d2da63b4d2ec 817b38976b5ebee53dd95b66124e36be {"aliquot_tag": "ALQ_f3315d44", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05099.RNA-Seq.chimeric.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.chimeric.gdc_realn.bam 136136053 BAM chimeric harmonized CPTAC3 19bae85a-2c25-471e-8419-93fed7962041 9c6d031a92a4ba58a95ad2bf927ed220 {"aliquot_tag": "ALQ_89f10e24", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05099.RNA-Seq.genomic.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.genomic.gdc_realn.bam 7461347703 BAM genomic harmonized CPTAC3 0e86b18d-4298-48cf-9618-9c6218b83fe1 3ef4ba8a7f7e08bd34ddb7d9ca31a707 {"aliquot_tag": "ALQ_89f10e24", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05099.RNA-Seq.S15_R1.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R1_001.fastq.gz 4731151101 FASTQ S15_R1 submitted_unaligned CPTAC3 d05d7bf3-cb2b-442b-b220-71c2786c30b4 c16f5a72714c76ed1ed75ce3e1a7e7a5 {"aliquot_tag": "ALQ_89f10e24", "sample": "S15", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05099.RNA-Seq.S15_R2.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R2_001.fastq.gz 4806018097 FASTQ S15_R2 submitted_unaligned CPTAC3 f7ed7d7b-4897-41f2-b774-709dc3ad0d8a ae0f695c744d26f81540cdada5339c55 {"aliquot_tag": "ALQ_89f10e24", "sample": "S15", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05099.RNA-Seq.transcriptome.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.transcriptome.gdc_realn.bam 5960974803 BAM transcriptome harmonized CPTAC3 92548086-6437-4cdc-8c50-5d6f5ff33222 80a917a1d79ff78cc7263171e377c711 {"aliquot_tag": "ALQ_89f10e24", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.MethArray.Green.T C3N-05100 LSCC Methylation_Array tumor CPT0321680006 204372030023_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 42ea3db3-7878-4d91-b7df-10969ada1006 30a9c32459d689e4e3daf2fc43b3e232 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.MethArray.Red.T C3N-05100 LSCC Methylation_Array tumor CPT0321680006 204372030023_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 a42733c2-680c-48ae-9dc9-05063e929cb7 f7361203d4e0e9e65e189cfa3b49a2d1 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.miRNA-Seq.S21_L008_R1.T C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L008_R1_001.unaln.bam 205266159 BAM S21_L008_R1 submitted_unaligned CPTAC3 089f3849-cf1f-43fa-ac2a-5f52e90983be 0473fd72d896d6cf03b9da1e588a24c9 {"aliquot_tag": "ALQ_5aed7fb9", "sample": "S21", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.miRNA-Seq.T.hg38 C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 0337b011-ac73-49e8-b392-60604c3a9de4_mirnaseq_gdc_realn.bam 229694116 BAM harmonized CPTAC3 1c629d09-b8d4-4947-aba8-87570144fc1f 1b41bf24675d60bc5438d6d5b1cf8863 {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.RNA-Seq.chimeric.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.chimeric.gdc_realn.bam 29143412 BAM chimeric harmonized CPTAC3 6b3f355e-3464-4154-adb4-2aa21f428d77 9b5cda3de2da81d37f24dd388af9e6bb {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.RNA-Seq.genomic.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.genomic.gdc_realn.bam 7833790111 BAM genomic harmonized CPTAC3 8b10d7f4-8290-46db-bbb7-2d396ae3005a 68d236480d5fa48132b2302d4a9d3076 {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.RNA-Seq.S5_L002_R1.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R1_001.fastq.gz 3707066529 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 94e80fa3-c4d8-4da0-97e7-da399c4939a1 d1815b8fb5167b5a84f3678434acaee4 {"aliquot_tag": "ALQ_5aed7fb9", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.RNA-Seq.S5_L002_R2.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R2_001.fastq.gz 4036803940 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 b2c5daa7-707a-4c87-bf16-6b740134c2d1 f045608be98f734a412867a6c1c2c96a {"aliquot_tag": "ALQ_5aed7fb9", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.RNA-Seq.transcriptome.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.transcriptome.gdc_realn.bam 11720859979 BAM transcriptome harmonized CPTAC3 91b41102-cdb5-4de7-b897-0324ba85eed4 71de4ce1be44b01dbfc3f8b6bfff5cc4 {"aliquot_tag": "ALQ_5aed7fb9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.WGS.N C3N-05100 LSCC WGS blood_normal CPT0321700002 CPT0321700002.WholeGenome.RP-2158.bam 21048768435 BAM submitted_aligned CPTAC3 c101d28b-617b-4116-9e7a-fd62285e618c a11eb31e2ab754c9d7d9a06e58ec231f {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05100.WGS.N.hg38 C3N-05100 LSCC WGS blood_normal CPT0321700002 39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wgs_gdc_realn.bam 62286351996 BAM harmonized CPTAC3 b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f d84c0504175233379452d1717621ef46 {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05100.WGS.T C3N-05100 LSCC WGS tumor CPT0321680006 CPT0321680006.WholeGenome.RP-2158.bam 19457716420 BAM submitted_aligned CPTAC3 9d0e5861-56dd-4a2f-9116-5b46bca16e5a 9fa589440659bfbc2af17a9bedc8624b {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.WGS.T.hg38 C3N-05100 LSCC WGS tumor CPT0321680006 5ef62f88-5293-4a68-a523-50eacbd2dc9b_wgs_gdc_realn.bam 57763506632 BAM harmonized CPTAC3 e32667cf-b7d8-4ec2-a63a-17497134fd97 ba9021d94738e48f04aa2d8c66920b68 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.WXS.N C3N-05100 LSCC WXS blood_normal CPT0321700002 CPT0321700002.WholeExome.RP-1303.bam 38754948621 BAM submitted_aligned CPTAC3 14271093-70ba-4c84-8e18-5dbeb8e147b5 19c6fd77d7b53b764b461c9bc5af9acc {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05100.WXS.N.hg38 C3N-05100 LSCC WXS blood_normal CPT0321700002 39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wxs_gdc_realn.bam 52694556758 BAM harmonized CPTAC3 05fa94e1-da84-4597-97cb-63a97ddb857b 70107fb2e1cbfa8a153512ad98e9f8e0 {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05100.WXS.T C3N-05100 LSCC WXS tumor CPT0321680006 CPT0321680006.WholeExome.RP-1303.bam 19296245113 BAM submitted_aligned CPTAC3 5be5ff5d-0747-4e96-af04-8826353653d4 ff4ee76a5bd934ed907e29bc5ed8e1c9 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05100.WXS.T.hg38 C3N-05100 LSCC WXS tumor CPT0321680006 5ef62f88-5293-4a68-a523-50eacbd2dc9b_wxs_gdc_realn.bam 26509937987 BAM harmonized CPTAC3 675f7e6d-bbea-44d5-9d78-5c14892feab7 84b0fcb3b2d9fbf89429d603221757b5 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.MethArray.Green.T C3N-05114 GBM Methylation_Array tumor CPT0375840007 204930640011_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1040482c-23f2-4f97-866d-a254e656776b 68d023004d6c9da2c31e41f9b1d0417c {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.MethArray.Red.T C3N-05114 GBM Methylation_Array tumor CPT0375840007 204930640011_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 586fbbda-3b4b-408b-866b-3580f9ae5566 d805011d60c2a087189977be59e8b37a {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.miRNA-Seq.S3_L006_R1.T C3N-05114 GBM miRNA-Seq tumor CPT0375840010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGAGC_S3_L006_R1_001.unaln.bam 238207174 BAM S3_L006_R1 submitted_unaligned CPTAC3 b607ed44-4dd4-4dbe-9e3a-6053a2daf518 46edec62acab3aa914eb6356b98a11b0 {"aliquot_tag": "ALQ_797f505a", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.miRNA-Seq.T.hg38 C3N-05114 GBM miRNA-Seq tumor CPT0375840010 36569e13-7688-4fce-8fd0-4d0cedb599b3_mirnaseq_gdc_realn.bam 266581230 BAM harmonized CPTAC3 a8655809-53a8-4e3e-8f82-1f31ad01e9b8 5ab56f1b64ab8cdbb0d37b1e132346b8 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.RNA-Seq.chimeric.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.chimeric.gdc_realn.bam 382265048 BAM chimeric harmonized CPTAC3 fe01c20a-8021-4b17-a2b5-4bac8c2294e8 eae251992eb1dd60af52c918d2da9108 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.RNA-Seq.genomic.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.genomic.gdc_realn.bam 7585267874 BAM genomic harmonized CPTAC3 1c395db0-995b-4a65-93f0-026b54b12aaa d4deff61e01f8985e04a8a59850be894 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.RNA-Seq.S15_L004_R1.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 0a01510e-f773-49bb-b942-ed13ac1e72a2 7ccb79cf4feb43cb7a11de2c17862a64 {"aliquot_tag": "ALQ_797f505a", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.RNA-Seq.S15_L004_R2.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 23d53980-2023-4c74-bb48-ff2282011226 6809a81e2988793b41f3ec0b1f4cf963 {"aliquot_tag": "ALQ_797f505a", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.RNA-Seq.transcriptome.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.transcriptome.gdc_realn.bam 11492121319 BAM transcriptome harmonized CPTAC3 a4886476-606d-494e-a7b6-e6d4f87ae822 f353f4ed16c2cec7620b6cf453463ae4 {"aliquot_tag": "ALQ_797f505a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.WGS.N C3N-05114 GBM WGS blood_normal CPT0375900002 CPT0375900002.WholeGenome.RP-2158.bam 23591039617 BAM submitted_aligned CPTAC3 38162097-8649-4ff4-b8c4-c53b803608a5 ffaa27d9cfbcf74be380a13bcf015b81 {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05114.WGS.N.hg38 C3N-05114 GBM WGS blood_normal CPT0375900002 e8446ae9-fcf6-48e3-8073-0b0ba6396588_wgs_gdc_realn.bam 69989761070 BAM harmonized CPTAC3 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae c8a12e347e6a8c8d117f11f16ae325e0 {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05114.WGS.T C3N-05114 GBM WGS tumor CPT0375840007 CPT0375840007.WholeGenome.RP-2158.bam 29844175746 BAM submitted_aligned CPTAC3 0d57def0-92d4-4b0f-8e0b-a73387c3674b 38179ed8709560da2a7c0f0b1d4e1139 {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.WGS.T.hg38 C3N-05114 GBM WGS tumor CPT0375840007 5169afe8-1fb1-459b-b5b6-f28129bc1de1_wgs_gdc_realn.bam 92653420444 BAM harmonized CPTAC3 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 87229f77c993c1833ab0bab0f4c808cd {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.WXS.N C3N-05114 GBM WXS blood_normal CPT0375900002 CPT0375900002.WholeExome.RP-1303.bam 25448556617 BAM submitted_aligned CPTAC3 d2b66007-8e18-4443-b239-99447327d37c f336660243d5a75ff6ca9659c6400561 {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05114.WXS.N.hg38 C3N-05114 GBM WXS blood_normal CPT0375900002 e8446ae9-fcf6-48e3-8073-0b0ba6396588_wxs_gdc_realn.bam 34460031755 BAM harmonized CPTAC3 ec6ae616-4341-4d27-8a50-698388968128 ee55ebbdcfa6374f1cc77c09412d69ae {"aliquot_tag": "ALQ_b0b67552", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05114.WXS.T C3N-05114 GBM WXS tumor CPT0375840007 CPT0375840007.WholeExome.RP-1303.bam 20791720954 BAM submitted_aligned CPTAC3 aeeef8e6-c57b-4416-ba7a-930e5a820a20 df769d0aea8660c90786828fe21f1b79 {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05114.WXS.T.hg38 C3N-05114 GBM WXS tumor CPT0375840007 5169afe8-1fb1-459b-b5b6-f28129bc1de1_wxs_gdc_realn.bam 29470990817 BAM harmonized CPTAC3 bede02c2-63fa-4694-bf71-778ceb6bf864 dd259ea57712c503b7a0d6ff77eee246 {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05135.MethArray.Green.T C3N-05135 GBM Methylation_Array tumor CPT0376380005 204930640064_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2d48f340-8fd0-4a43-8883-506e23a70576 154a118099eb0d891bcb04362aa569ba {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.MethArray.Red.T C3N-05135 GBM Methylation_Array tumor CPT0376380005 204930640064_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 79b850bd-e2d2-4036-8c50-d93460a66c95 fb9822ceea3e307aca9050d6df6d88b6 {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.miRNA-Seq.S4_L007_R1.T C3N-05135 GBM miRNA-Seq tumor CPT0376380009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATTCCT_S4_L007_R1_001.unaln.bam 212589586 BAM S4_L007_R1 submitted_unaligned CPTAC3 42853fb5-69b7-4547-8a07-662ee45a6ff1 9ec463c4505a174611276ec332863211 {"aliquot_tag": "ALQ_8767dee0", "sample": "S4", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.miRNA-Seq.T.hg38 C3N-05135 GBM miRNA-Seq tumor CPT0376380009 61831f48-b9d2-418c-83e1-abccebef1bc5_mirnaseq_gdc_realn.bam 236078424 BAM harmonized CPTAC3 3280de74-19ac-4d09-b76b-63377904592e a22c6d823d26b91d176f0c936405138d {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.RNA-Seq.chimeric.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.chimeric.gdc_realn.bam 646868456 BAM chimeric harmonized CPTAC3 d30d77cb-a85d-4617-9207-ddf50e849c3c f45692ba8f60948bf6488501860423a7 {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.RNA-Seq.genomic.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.genomic.gdc_realn.bam 7837920975 BAM genomic harmonized CPTAC3 ca7e72d4-c212-400f-b47d-735fd40e4dce 606e6785bdc6eb6a37d9ef10cc3cf94a {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.RNA-Seq.S14_L004_R1.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 f923cf94-4f61-4f33-8cab-5328f7853280 d2d92fa1c53cb23b60d1b41b5d4dbed5 {"aliquot_tag": "ALQ_8767dee0", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.RNA-Seq.S14_L004_R2.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 bba10325-9b48-47e2-8983-b3687f010e06 3466d03aec58e9bb0ce0a17601332f9a {"aliquot_tag": "ALQ_8767dee0", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.RNA-Seq.transcriptome.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.transcriptome.gdc_realn.bam 8284987096 BAM transcriptome harmonized CPTAC3 c317bbb9-01b9-4c01-843c-7a51dd57309e f5bfa0259dfa1478081006723ba7ea8c {"aliquot_tag": "ALQ_8767dee0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.WGS.N C3N-05135 GBM WGS blood_normal CPT0376440002 CPT0376440002.WholeGenome.RP-2158.bam 23324063857 BAM submitted_aligned CPTAC3 645e182c-a2ad-4329-8e06-7b7798b1b827 9e38921d6dae8efa715300066372cefb {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05135.WGS.N.hg38 C3N-05135 GBM WGS blood_normal CPT0376440002 d69369cc-a994-4e4f-af13-4948398b347b_wgs_gdc_realn.bam 68301546626 BAM harmonized CPTAC3 5dc48332-6ed2-417b-958f-c1595135fa9e fb78af873c3353c51b4c3adffe081ec9 {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05135.WGS.T C3N-05135 GBM WGS tumor CPT0376380005 CPT0376380005.WholeGenome.RP-2158.bam 26465673099 BAM submitted_aligned CPTAC3 bcb1ec0a-99ac-4ca9-961a-4b5ab271f384 4c2676dd4e90a86bdfd2aba23a19a69a {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.WGS.T.hg38 C3N-05135 GBM WGS tumor CPT0376380005 f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wgs_gdc_realn.bam 79724813019 BAM harmonized CPTAC3 c50b159a-8d6b-4760-afff-db1dce9ff738 4b7f2e93e3699552bd91f60953be22b0 {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.WXS.N C3N-05135 GBM WXS blood_normal CPT0376440002 CPT0376440002.WholeExome.RP-1303.bam 25191303128 BAM submitted_aligned CPTAC3 1d01b9a3-f8de-43d8-9f28-277c29919db9 97b524051c0866f89b6af69556479a43 {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05135.WXS.N.hg38 C3N-05135 GBM WXS blood_normal CPT0376440002 d69369cc-a994-4e4f-af13-4948398b347b_wxs_gdc_realn.bam 34914215861 BAM harmonized CPTAC3 98ae81ee-90ef-4c56-8a69-5c5b73fecfec d964c89e7489825f5bee2d3443060b98 {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05135.WXS.T C3N-05135 GBM WXS tumor CPT0376380005 CPT0376380005.WholeExome.RP-1303.bam 23767669742 BAM submitted_aligned CPTAC3 9ae07a67-852d-4882-bd82-b1567a9d411d f7c5c2da7aa083b3a973b0e96b4111fd {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05135.WXS.T.hg38 C3N-05135 GBM WXS tumor CPT0376380005 f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wxs_gdc_realn.bam 31921769918 BAM harmonized CPTAC3 e098c85d-4df0-4dfb-84e9-3bf91a4e3491 979be17975014a8e5f5f960338f107be {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05629.MethArray.Green.A C3N-05629 LSCC Methylation_Array tissue_normal CPT0321770006 204372030090_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6b68145b-a296-4fab-8e94-f5f8d325faf7 607b624f10a0e5e83411f04c5aac528c {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.MethArray.Green.T C3N-05629 LSCC Methylation_Array tumor CPT0321760006 204367490066_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 543b66ab-9f4f-49d3-865e-e6cbafe9419a 4bc8903d923903e6cd7d14fe2168e384 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.MethArray.Red.A C3N-05629 LSCC Methylation_Array tissue_normal CPT0321770006 204372030090_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 a660e408-0bb5-45a3-b749-ea1709dd30b0 9d82b2850bada7be0d9751f1bc1b8532 {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.MethArray.Red.T C3N-05629 LSCC Methylation_Array tumor CPT0321760006 204367490066_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 a8a9573d-404b-4677-bc06-aa602cefba95 6455b01371f71d8c3ebc8e940ce04205 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.miRNA-Seq.A.hg38 C3N-05629 LSCC miRNA-Seq tissue_normal CPT0321770009 b2973002-6eba-4812-8ab4-d07288040c7f_mirnaseq_gdc_realn.bam 286232027 BAM harmonized CPTAC3 93aff772-d665-49d9-9065-0e34c106c1f2 be634416488ca5d3192b5af9a04a9660 {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.miRNA-Seq.S10_L001_R1.A C3N-05629 LSCC miRNA-Seq tissue_normal CPT0321770009 200325_UNC31-K00269_0272_AHHC2NBBXY_CATGGC_S10_L001_R1_001.unaln.bam 254242993 BAM S10_L001_R1 submitted_unaligned CPTAC3 fd7c5570-69f2-4cb7-a81b-69e968eac396 31335d0b958175dbfc1ec2791f95d87c {"aliquot_tag": "ALQ_13e13bcd", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.miRNA-Seq.S22_L008_R1.T C3N-05629 LSCC miRNA-Seq tumor CPT0321760009 200224_UNC31-K00269_0267_AHC722BBXY_CGTACG_S22_L008_R1_001.unaln.bam 173798048 BAM S22_L008_R1 submitted_unaligned CPTAC3 5514129f-9993-4002-83a2-ddeeeed401d7 ef606d3f015f18f809c0de4d154e4c64 {"aliquot_tag": "ALQ_2e81127d", "sample": "S22", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.miRNA-Seq.T.hg38 C3N-05629 LSCC miRNA-Seq tumor CPT0321760009 1028ebdd-8b23-4022-9c09-5bebcf3c748c_mirnaseq_gdc_realn.bam 198771303 BAM harmonized CPTAC3 a4946480-8392-418f-af8b-807af46b7059 f0176290212ef0c1f4b3360101f04243 {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.RNA-Seq.chimeric.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.chimeric.gdc_realn.bam 138675380 BAM chimeric harmonized CPTAC3 98cf8e88-ce0f-425b-8b68-ffe0fcf16479 864d42f073f6146746196732fec44326 {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.RNA-Seq.chimeric.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.chimeric.gdc_realn.bam 21157110 BAM chimeric harmonized CPTAC3 13a5856e-dbf1-473b-986c-b04505db208f b279b4c3753880630ac380e13ee4b200 {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.RNA-Seq.genomic.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.genomic.gdc_realn.bam 7593938163 BAM genomic harmonized CPTAC3 c5d4328f-15dc-4c1e-8ee3-b2e283ba4016 4d6ecc20d95cc5cf8855bd5bfa1dbafd {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.RNA-Seq.genomic.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.genomic.gdc_realn.bam 5104897290 BAM genomic harmonized CPTAC3 d253e112-22d6-4668-8263-14ee9d20b286 5da48197bf58e3beb7ae96bc91534dcf {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.RNA-Seq.S18_L005_R1.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R1_001.fastq.gz 3782320688 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 1a8f0eef-c9ac-4a60-bb7f-d7898d725906 a062246f5bc7b5accf678c4f7a64e6bf {"aliquot_tag": "ALQ_13e13bcd", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.RNA-Seq.S18_L005_R2.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R2_001.fastq.gz 3985887125 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 720bf299-c055-4193-98ef-eb0a651454bc 374a2a135288bb590ec601cb6dd22e81 {"aliquot_tag": "ALQ_13e13bcd", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.RNA-Seq.S6_L002_R1.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R1_001.fastq.gz 2467086846 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 7f49c621-13e9-4e66-90e3-afc5545d86de de49766cbe860c648571c50083ee6fd3 {"aliquot_tag": "ALQ_2e81127d", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.RNA-Seq.S6_L002_R2.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R2_001.fastq.gz 2680135041 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 8da05c95-0d72-4ac1-84f7-439baa0626f7 792bb14235051c7cc28529648f2e0c67 {"aliquot_tag": "ALQ_2e81127d", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.RNA-Seq.transcriptome.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.transcriptome.gdc_realn.bam 9859804329 BAM transcriptome harmonized CPTAC3 688c0d05-523c-4e6d-ab35-b53a434ac188 9865a5c4ce5b7ea5c7d6e8b0b0190bd0 {"aliquot_tag": "ALQ_13e13bcd", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.RNA-Seq.transcriptome.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.transcriptome.gdc_realn.bam 7492736514 BAM transcriptome harmonized CPTAC3 a241bd02-8323-45bf-b45d-3cf23e06568d ed83d7345ee7fd47fe625af5947a768b {"aliquot_tag": "ALQ_2e81127d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.WGS.N C3N-05629 LSCC WGS blood_normal CPT0321800002 CPT0321800002.WholeGenome.RP-2158.bam 25902474734 BAM submitted_aligned CPTAC3 b584ba5a-f4cf-45db-a416-bde48302c251 2c9e475210c1fc1695d7e8a9dcec44ad {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05629.WGS.N.hg38 C3N-05629 LSCC WGS blood_normal CPT0321800002 52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wgs_gdc_realn.bam 75748276047 BAM harmonized CPTAC3 f50609fc-9226-4f82-a225-48e4491d6e1a 9a6061f78f38ceb4c5d5eb36dbd2da82 {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05629.WGS.T C3N-05629 LSCC WGS tumor CPT0321760006 CPT0321760006.WholeGenome.RP-2158.bam 21989426422 BAM submitted_aligned CPTAC3 05d48fce-fcee-410e-a1c2-1eee0b197061 4f4736a09da0381d54c31b059942db96 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.WGS.T.hg38 C3N-05629 LSCC WGS tumor CPT0321760006 392cdd57-f49f-436c-88b4-556f2a60586a_wgs_gdc_realn.bam 64929840130 BAM harmonized CPTAC3 c1ae0af0-8e3d-48fd-81da-7364eaca0c00 27bfb8ba6367b5311312d96ea3e3f25d {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.WXS.A C3N-05629 LSCC WXS tissue_normal CPT0321770006 CPT0321770006.WholeExome.RP-1303.bam 22527659093 BAM submitted_aligned CPTAC3 fa90e122-5917-4f5c-b41e-1c2332206a71 0ab055497497378b3c1a65f8682ed14a {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.WXS.A.hg38 C3N-05629 LSCC WXS tissue_normal CPT0321770006 a1f770b1-af67-4346-bbc2-00c8da1ced09_wxs_gdc_realn.bam 31587980448 BAM harmonized CPTAC3 2f022282-6285-40d0-862f-a1785be0f24b 86614cd4394ab5527ab78e89e3f5c9fa {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05629.WXS.N C3N-05629 LSCC WXS blood_normal CPT0321800002 CPT0321800002.WholeExome.RP-1303.bam 22001185146 BAM submitted_aligned CPTAC3 b7cdef42-55a8-49c0-a8eb-b2c22fc4949b b955970b83e5bae0952a9b52f94d6126 {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05629.WXS.N.hg38 C3N-05629 LSCC WXS blood_normal CPT0321800002 52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wxs_gdc_realn.bam 29425665424 BAM harmonized CPTAC3 5858e7a0-8245-4e5f-ab44-f1d59930ba6d bd9e164b7a875d102890bfd88f369c55 {"aliquot_tag": "ALQ_c7458c80", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05629.WXS.T C3N-05629 LSCC WXS tumor CPT0321760006 CPT0321760006.WholeExome.RP-1303.bam 41572110141 BAM submitted_aligned CPTAC3 129764fd-45fa-4597-81ab-84dec556f710 2fbd06437bf0f65caede964f3c0d1773 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05629.WXS.T.hg38 C3N-05629 LSCC WXS tumor CPT0321760006 392cdd57-f49f-436c-88b4-556f2a60586a_wxs_gdc_realn.bam 57779377757 BAM harmonized CPTAC3 602b4fc0-be3b-43af-9651-9b78edf6e935 05000c4b3736dfabdd08d13359258c36 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.MethArray.Green.A C3N-05911 LSCC Methylation_Array tissue_normal CPT0321870006 204930640042_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6671f685-f478-49c1-82f9-5149db689aa8 47285c88808e69081da0dff962854421 {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.MethArray.Green.T C3N-05911 LSCC Methylation_Array tumor CPT0384280006 204930640023_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 cfd1a0cd-56f1-42d5-bc6b-8241577345ce e4666304efd25f98e755cc0aaa9a0a20 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.MethArray.Red.A C3N-05911 LSCC Methylation_Array tissue_normal CPT0321870006 204930640042_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 1c811e33-42b4-4103-8b83-324c955ebed9 d8075a08f703e6cd01a6fb9ca5948ed9 {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.MethArray.Red.T C3N-05911 LSCC Methylation_Array tumor CPT0384280006 204930640023_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 4446a24e-7b63-4a23-a69c-1b129b6da22a 420663b6f4796483e4f6e5b1e4f84893 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.miRNA-Seq.A.hg38 C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 8bbcbd7c-552f-4614-beb1-784a612d7a45_mirnaseq_gdc_realn.bam 229055485 BAM harmonized CPTAC3 47330cbc-de15-4de1-8354-2b54d3874d3c c9b363256874422940d5b30522885544 {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.miRNA-Seq.S24_L007_R1.T C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTCAA_S24_L007_R1_001.unaln.bam 335161236 BAM S24_L007_R1 submitted_unaligned CPTAC3 50689b11-63be-4b1b-aa4e-0bc0c1cbb938 44d4de901708dbca725a4c31f0c14135 {"aliquot_tag": "ALQ_2840ec0", "sample": "S24", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.miRNA-Seq.S27_L007_R1.A C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGATC_S27_L007_R1_001.unaln.bam 209412885 BAM S27_L007_R1 submitted_unaligned CPTAC3 e7ac4a78-57e6-4220-a4d7-102c432fb9cb c1dfa639e8c7cd83e82fe3740bcc92d3 {"aliquot_tag": "ALQ_e2b78918", "sample": "S27", "lane": "L007", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.miRNA-Seq.T.hg38 C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 982cb22a-ef85-47bb-ac67-3681731e6110_mirnaseq_gdc_realn.bam 359864120 BAM harmonized CPTAC3 cef06ca3-dc8e-4834-b757-e323a3abada9 a46f78f678929cac2590fec4db3d97e1 {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.RNA-Seq.chimeric.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.chimeric.gdc_realn.bam 431008863 BAM chimeric harmonized CPTAC3 b5aedd37-216f-4914-b920-e28be9faaba0 18fbde517880a9263748b07f104a4725 {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.RNA-Seq.chimeric.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.chimeric.gdc_realn.bam 348158223 BAM chimeric harmonized CPTAC3 1d8c14b3-fc56-475d-884d-ac9fc9cc0590 3dadb17d4350c32c0600c8d9d041fbd2 {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.RNA-Seq.genomic.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.genomic.gdc_realn.bam 10520732225 BAM genomic harmonized CPTAC3 9df5e8d2-2149-4f64-bda1-448835f49feb 5ef008a620c785764273c4a16b11aa1f {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.RNA-Seq.genomic.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.genomic.gdc_realn.bam 6778537793 BAM genomic harmonized CPTAC3 2f380c4a-a557-4be3-89cc-cf3bfc986c79 60e370d9dcf9de802a1ab32e09b63c9b {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.RNA-Seq.S4_L001_R1.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ S4_L001_R1 submitted_unaligned CPTAC3 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 {"aliquot_tag": "ALQ_2840ec0", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.RNA-Seq.S4_L001_R2.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ S4_L001_R2 submitted_unaligned CPTAC3 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d {"aliquot_tag": "ALQ_2840ec0", "sample": "S4", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.RNA-Seq.S7_L002_R1.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 5346921141 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 a0f2d25e-3679-4976-a59f-b73553463131 5d56182edf28334b2142d3262555ea1c {"aliquot_tag": "ALQ_e2b78918", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.RNA-Seq.S7_L002_R2.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 {"aliquot_tag": "ALQ_e2b78918", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.RNA-Seq.transcriptome.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.transcriptome.gdc_realn.bam 14060414532 BAM transcriptome harmonized CPTAC3 53b33e29-fa56-4557-9429-367a8244e238 9a34daeb90a2a84bef8c37f161a9f6a7 {"aliquot_tag": "ALQ_e2b78918", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.RNA-Seq.transcriptome.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.transcriptome.gdc_realn.bam 12220646917 BAM transcriptome harmonized CPTAC3 7a679205-3909-4152-9e18-ee23ce3e32cf 9f59655ba10889672857b945da48e9ac {"aliquot_tag": "ALQ_2840ec0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.WGS.N C3N-05911 LSCC WGS blood_normal CPT0321900002 CPT0321900002.WholeGenome.RP-2158.bam 25580109842 BAM submitted_aligned CPTAC3 8add1311-5ba7-4fa2-8591-ef551f8ea960 d061d6989aa02ee2496acc890a65d836 {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05911.WGS.N.hg38 C3N-05911 LSCC WGS blood_normal CPT0321900002 03bad097-34d3-4e30-ad80-825f378201a6_wgs_gdc_realn.bam 76481181886 BAM harmonized CPTAC3 f9f9435b-e4de-4034-90ef-6bc10e3ec92f 29e91ba7f23f27e64706e93083be9ddf {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05911.WGS.T C3N-05911 LSCC WGS tumor CPT0384280006 CPT0384280006.WholeGenome.RP-2158.bam 23760701955 BAM submitted_aligned CPTAC3 4b245764-6fae-4ee4-8f8a-5ea6a7da4a7f 6d6be5a3643206b7ea437f2390ebf2d5 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.WGS.T.hg38 C3N-05911 LSCC WGS tumor CPT0384280006 a583d581-59a9-473e-b9ab-bb07c3506991_wgs_gdc_realn.bam 66745255528 BAM harmonized CPTAC3 bd088e73-2480-4c6a-bfed-768b218e4dec cd781939af6d680f062758098493a277 {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.WXS.A C3N-05911 LSCC WXS tissue_normal CPT0321870006 CPT0321870006.WholeExome.RP-1303.bam 21699064525 BAM submitted_aligned CPTAC3 d32c097e-ef8a-4061-ac06-da419499d068 e2712f3dda8a311665c7793a3a95eb0f {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05911.WXS.A.hg38 C3N-05911 LSCC WXS tissue_normal CPT0321870006 2e89b813-04a1-4093-be70-dd4300364617_wxs_gdc_realn.bam 29873356816 BAM harmonized CPTAC3 96b1c4dc-3a6c-476c-9e1f-2f063c7ca0be 0282945c5eaa84efa3bbf771b6d528a4 {"aliquot_tag": "ALQ_72089489", "gdc_sample_type": "Solid Tissue Normal", "state": "validated"} +C3N-05911.WXS.N C3N-05911 LSCC WXS blood_normal CPT0321900002 CPT0321900002.WholeExome.RP-1303.bam 24715994767 BAM submitted_aligned CPTAC3 90062731-21cb-411a-aa06-8d645b53633d 4e4b5bb3703f9326579a013b4dc641a8 {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05911.WXS.N.hg38 C3N-05911 LSCC WXS blood_normal CPT0321900002 03bad097-34d3-4e30-ad80-825f378201a6_wxs_gdc_realn.bam 33849560140 BAM harmonized CPTAC3 28e7017c-0019-4497-b317-09ff85ce500c a57fd8791e8cf938dd7eeaeb36785a3e {"aliquot_tag": "ALQ_c195f25", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05911.WXS.T C3N-05911 LSCC WXS tumor CPT0384280006 CPT0384280006.WholeExome.RP-1303.bam 31272418772 BAM submitted_aligned CPTAC3 c88fe497-d5ef-4b4a-a28e-52f6e4d6834f d01995d54f1ea43faaaf551c1d0411de {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05911.WXS.T.hg38 C3N-05911 LSCC WXS tumor CPT0384280006 a583d581-59a9-473e-b9ab-bb07c3506991_wxs_gdc_realn.bam 43571314276 BAM harmonized CPTAC3 ad1b9d7f-9680-4c37-87e9-d9018c5e2487 31bdaf7ee5260907cdf9958ed6a8068c {"aliquot_tag": "ALQ_923b1351", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05914.MethArray.Green.A C3N-05914 LSCC Methylation_Array tissue_normal CPT0322020006 204372030090_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d0164af3-cefb-46d3-b903-c0b749106a98 31382a95b6296dd7c5cf380e9ea81842 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.MethArray.Green.T C3N-05914 LSCC Methylation_Array tumor CPT0322010006 204367490090_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 510ff8df-45b6-4d5e-b111-4e903d5bb900 99c11d9a89f102ac8fe9558ebb6013d0 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.MethArray.Red.A C3N-05914 LSCC Methylation_Array tissue_normal CPT0322020006 204372030090_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 d760444a-9029-4c3c-a9f5-8fc189c55243 9557107e7fd0e94d2ebb4cf77acca921 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.MethArray.Red.T C3N-05914 LSCC Methylation_Array tumor CPT0322010006 204367490090_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 b068e432-3af2-4377-adda-326276089788 6611e3789381f1c436b17e0bdd7897ab {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.miRNA-Seq.A.hg38 C3N-05914 LSCC miRNA-Seq tissue_normal CPT0322020009 1d7e1bbf-cfaa-4c41-a5aa-9421e23a7bb4_mirnaseq_gdc_realn.bam 280267722 BAM harmonized CPTAC3 80f93150-ede2-4400-ad96-b084ef83c68b b15e69eb9b1878a44291cc74cbfc24a2 {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.miRNA-Seq.S11_L001_R1.A C3N-05914 LSCC miRNA-Seq tissue_normal CPT0322020009 200325_UNC31-K00269_0272_AHHC2NBBXY_CATTTT_S11_L001_R1_001.unaln.bam 253845612 BAM S11_L001_R1 submitted_unaligned CPTAC3 d1bfcda8-a0e7-486c-a75c-c6aa2abf1d20 4ed74a0f2c122765a34923a0a6588e1c {"aliquot_tag": "ALQ_f7ec9e98", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.miRNA-Seq.S23_L008_R1.T C3N-05914 LSCC miRNA-Seq tumor CPT0322010009 200224_UNC31-K00269_0267_AHC722BBXY_GAGTGG_S23_L008_R1_001.unaln.bam 198641139 BAM S23_L008_R1 submitted_unaligned CPTAC3 3e90ad97-3e9f-4f35-b740-8dffbed311e6 b7f82613524d32ae6ab63b4377483c0e {"aliquot_tag": "ALQ_b04ce448", "sample": "S23", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.miRNA-Seq.T.hg38 C3N-05914 LSCC miRNA-Seq tumor CPT0322010009 62f8f709-a6e7-4603-b9c3-30bd40db2b18_mirnaseq_gdc_realn.bam 221125816 BAM harmonized CPTAC3 82538b6f-3a7c-4ff6-90f8-d353d6c692a6 04a019c5d388f33d5ba33c10eae93d93 {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.RNA-Seq.chimeric.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.chimeric.gdc_realn.bam 92153015 BAM chimeric harmonized CPTAC3 4b6d974b-c7cd-4a22-b08a-eb378dcd612e f5d99ca424e82a71047a27d3fbbf0818 {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.RNA-Seq.chimeric.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.chimeric.gdc_realn.bam 51184185 BAM chimeric harmonized CPTAC3 0efb96f4-6376-46ff-9339-e72bb6d8e355 b5544c4a6f324dae1c503dca7273cb16 {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.RNA-Seq.genomic.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.genomic.gdc_realn.bam 6937340639 BAM genomic harmonized CPTAC3 ea140e7b-bbb9-45cf-bd32-7cdbafc81b64 db4b851e0c32c5108dd3eb0c6b36747d {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.RNA-Seq.genomic.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.genomic.gdc_realn.bam 10907929736 BAM genomic harmonized CPTAC3 f147d42e-11a3-4081-a0c4-62f6e1726f9e ebfa067ad466bb9ab2c60ad33ec756dc {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.RNA-Seq.S19_L005_R1.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R1_001.fastq.gz 3400862397 FASTQ S19_L005_R1 submitted_unaligned CPTAC3 58847338-77fa-4225-ae9a-d7cabe9abcc3 cd894b5a439454dc9fe082165420865d {"aliquot_tag": "ALQ_f7ec9e98", "sample": "S19", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.RNA-Seq.S19_L005_R2.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R2_001.fastq.gz 3556116993 FASTQ S19_L005_R2 submitted_unaligned CPTAC3 a2209efe-30e2-43b0-88d0-736412de5aaa a1133fdf11e9e86422bd6148babb595c {"aliquot_tag": "ALQ_f7ec9e98", "sample": "S19", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.RNA-Seq.S7_L002_R1.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 5267685992 FASTQ S7_L002_R1 submitted_unaligned CPTAC3 42619f5f-391a-4775-a515-1b5714a90f1b 42e685f48158091e501cd860d394ce0b {"aliquot_tag": "ALQ_b04ce448", "sample": "S7", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.RNA-Seq.S7_L002_R2.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 5750197657 FASTQ S7_L002_R2 submitted_unaligned CPTAC3 3931c065-87df-472d-9583-a9be46390ee2 9d1cb10fc438db736a910c8425929c5f {"aliquot_tag": "ALQ_b04ce448", "sample": "S7", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.RNA-Seq.transcriptome.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.transcriptome.gdc_realn.bam 10082282876 BAM transcriptome harmonized CPTAC3 dac5a4b7-675e-40bc-a97c-9e8d99c680e3 9329e961518a9e5398fa394531d72bf4 {"aliquot_tag": "ALQ_f7ec9e98", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.RNA-Seq.transcriptome.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.transcriptome.gdc_realn.bam 13983768268 BAM transcriptome harmonized CPTAC3 8aedb480-0860-4300-a50f-155b72675a8a b082aab384c8c6b0586d9dc4ddd367b3 {"aliquot_tag": "ALQ_b04ce448", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.WGS.N C3N-05914 LSCC WGS blood_normal CPT0322050002 CPT0322050002.WholeGenome.RP-2158.bam 23229715209 BAM submitted_aligned CPTAC3 ed727cd1-4f92-4f4a-8de5-b393ef901fa5 c34e9e068a7f6d8675285ee98ea1ae61 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05914.WGS.N.hg38 C3N-05914 LSCC WGS blood_normal CPT0322050002 8f68f68a-13a5-4085-a115-17a6701ab6fd_wgs_gdc_realn.bam 67977021003 BAM harmonized CPTAC3 a5b9dad9-61b5-4b00-b76e-d1964d9932bb a842e826b2363e2677297c5c90a14f69 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05914.WGS.T C3N-05914 LSCC WGS tumor CPT0322010006 CPT0322010006.WholeGenome.RP-2158.bam 22813058414 BAM submitted_aligned CPTAC3 43e756e2-8ea2-4a9e-ba9b-81afc437782d 21a6f1c0b18a3ffb0180b59c02663bf6 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.WGS.T.hg38 C3N-05914 LSCC WGS tumor CPT0322010006 50080744-d8e0-430b-93a5-77eddd53834b_wgs_gdc_realn.bam 68191898266 BAM harmonized CPTAC3 e7d3a961-5650-41cd-856b-3073994a9331 ce3c392c4e1e02cbc9d22bc9c033ea69 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.WXS.A C3N-05914 LSCC WXS tissue_normal CPT0322020006 CPT0322020006.WholeExome.RP-1303.bam 36726728652 BAM submitted_aligned CPTAC3 5b551d44-9864-4f54-ad1d-b60ef1046e5c e66b2318a65cb185ddc76c37f7499c39 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.WXS.A.hg38 C3N-05914 LSCC WXS tissue_normal CPT0322020006 8a6133ec-b7d7-41cc-9f06-fdde732e96af_wxs_gdc_realn.bam 51266147966 BAM harmonized CPTAC3 ef2b7fbd-32ef-41cd-805d-e7b9365644e3 8300d936117be6717d8d645d9ad0c2c9 {"aliquot_tag": "ALQ_67538309", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05914.WXS.N C3N-05914 LSCC WXS blood_normal CPT0322050002 CPT0322050002.WholeExome.RP-1303.bam 23391847397 BAM submitted_aligned CPTAC3 0de1bd67-5646-4e9b-9fc8-131bf2c6a5fa a26eb2b149ce409c0534ba2d49665958 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05914.WXS.N.hg38 C3N-05914 LSCC WXS blood_normal CPT0322050002 8f68f68a-13a5-4085-a115-17a6701ab6fd_wxs_gdc_realn.bam 31782809625 BAM harmonized CPTAC3 94f7165c-e916-4787-a759-5344c20f038f d6f7e4c316a24771aeeafa0f7c563876 {"aliquot_tag": "ALQ_d21e9b00", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05914.WXS.T C3N-05914 LSCC WXS tumor CPT0322010006 CPT0322010006.WholeExome.RP-1303.bam 38552678628 BAM submitted_aligned CPTAC3 ed188548-0bd3-4125-bf7d-80b0cea276a0 16edbf3efaa98faec8eccdb267f4b285 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05914.WXS.T.hg38 C3N-05914 LSCC WXS tumor CPT0322010006 50080744-d8e0-430b-93a5-77eddd53834b_wxs_gdc_realn.bam 54053523042 BAM harmonized CPTAC3 758fbdf5-bb70-49dc-99b1-380d4fb1fdda ab8fdc6f9401360497446f1f5d4d53d0 {"aliquot_tag": "ALQ_20f3f9d9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.MethArray.Green.A C3N-05915 LSCC Methylation_Array tissue_normal CPT0322070006 204372030085_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e496ff1a-24db-4c8e-9f71-b923549cd0f5 4a07c179602ba2534170646570b3948e {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.MethArray.Green.T C3N-05915 LSCC Methylation_Array tumor CPT0322060006 204367490043_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5287386b-d2a2-42d0-8d2d-6e56e501ae42 98fb28112ccd94441e2ab2a1b550b963 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.MethArray.Red.A C3N-05915 LSCC Methylation_Array tissue_normal CPT0322070006 204372030085_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 c0ecf474-f85b-4d20-8c5d-1bfb8f78a032 5dc6110aaf3c487d5d87184a4309c674 {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.MethArray.Red.T C3N-05915 LSCC Methylation_Array tumor CPT0322060006 204367490043_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 c24c7ed8-0eb0-41fc-b553-283ecf7fe07d 729a5faa242dae3fec9a078b4860c8c3 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.miRNA-Seq.A.hg38 C3N-05915 LSCC miRNA-Seq tissue_normal CPT0322070009 85f8793d-2436-44cc-a6be-cb2f443896b8_mirnaseq_gdc_realn.bam 257121883 BAM harmonized CPTAC3 b61bdd84-a1f5-44b4-b65f-772becd8b2ae 017bc6503f9670661277fe34471c20f7 {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.miRNA-Seq.S12_L001_R1.A C3N-05915 LSCC miRNA-Seq tissue_normal CPT0322070009 200325_UNC31-K00269_0272_AHHC2NBBXY_CCAACA_S12_L001_R1_001.unaln.bam 228888808 BAM S12_L001_R1 submitted_unaligned CPTAC3 b7510650-9f2b-4af7-9f1e-d8088e5d593d 72db9eff9eb18fa8fc6afc5988224574 {"aliquot_tag": "ALQ_3f0c11e8", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.miRNA-Seq.S24_L008_R1.T C3N-05915 LSCC miRNA-Seq tumor CPT0322060009 200224_UNC31-K00269_0267_AHC722BBXY_GGTAGC_S24_L008_R1_001.unaln.bam 179125540 BAM S24_L008_R1 submitted_unaligned CPTAC3 b2f36d14-f9c2-4410-b7d6-15ea391ba8e1 f05f4845dfa1d6c005534ce9a515007a {"aliquot_tag": "ALQ_26c3858", "sample": "S24", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.miRNA-Seq.T.hg38 C3N-05915 LSCC miRNA-Seq tumor CPT0322060009 9e4e0903-c9f8-4cde-af37-8db1b1be8582_mirnaseq_gdc_realn.bam 197900557 BAM harmonized CPTAC3 c64ae0a9-1bc5-4048-9947-81f73debe2bf 801ff1439af5f64bcc3bb818867f78db {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.RNA-Seq.chimeric.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.chimeric.gdc_realn.bam 119521512 BAM chimeric harmonized CPTAC3 fd2758d9-6dc6-4f9e-b7cb-066b6dcfde70 3ffa0c503e575f6f8a54c9e15225570f {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.RNA-Seq.chimeric.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.chimeric.gdc_realn.bam 34731555 BAM chimeric harmonized CPTAC3 e4e5e752-c1e0-4bbf-8abb-9a35ce6db365 ac1570509c143945a55ab00c63cf6f0b {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.RNA-Seq.genomic.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.genomic.gdc_realn.bam 9198530696 BAM genomic harmonized CPTAC3 fc8b791b-d63a-47bf-987c-98c45971f926 573a187742a71aa248b55059335935af {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.RNA-Seq.genomic.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.genomic.gdc_realn.bam 7907000354 BAM genomic harmonized CPTAC3 93c0703c-7486-47d4-8668-fa1df6319baf 2f8e8125f77771c4818b009841f8f7d3 {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.RNA-Seq.S20_L005_R1.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R1_001.fastq.gz 4785620358 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 2eb48e82-c9fb-49f0-8b86-8bfc59f07970 7b2906ab1ffb41a17fce3448c8bb540e {"aliquot_tag": "ALQ_3f0c11e8", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.RNA-Seq.S20_L005_R2.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R2_001.fastq.gz 4970327192 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 feb2ffa1-b685-4ffb-a7b7-871bc446a2bb 5cb9adee585c1e71c515c4aa62765d9f {"aliquot_tag": "ALQ_3f0c11e8", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.RNA-Seq.S8_L002_R1.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R1_001.fastq.gz 3825956607 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 75bdae0c-f147-4087-8fed-495747727c5a be9b707db66e2c34acd26a0b94f61c27 {"aliquot_tag": "ALQ_26c3858", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.RNA-Seq.S8_L002_R2.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R2_001.fastq.gz 4176622628 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 2275b000-ab63-41d0-9239-28c5b2296c46 36d5d92c9beef9dbba0720a2cef36cdf {"aliquot_tag": "ALQ_26c3858", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.RNA-Seq.transcriptome.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.transcriptome.gdc_realn.bam 12490361166 BAM transcriptome harmonized CPTAC3 cf7a4cbd-210f-4112-adae-9970e06c60ae 876d35e2df9a6b1ec40312d281aaafeb {"aliquot_tag": "ALQ_3f0c11e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.RNA-Seq.transcriptome.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.transcriptome.gdc_realn.bam 10760464255 BAM transcriptome harmonized CPTAC3 65be7d6c-868b-4523-b3b2-dcf2dbf9c671 c366b4759dc48cf3f4961b9ad1f5dc87 {"aliquot_tag": "ALQ_26c3858", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.WGS.N C3N-05915 LSCC WGS blood_normal CPT0322100002 CPT0322100002.WholeGenome.RP-2158.bam 24168918360 BAM submitted_aligned CPTAC3 4d992dd8-4561-44c4-9c73-502480f9ddd4 8d11c040902754b63c412a5d2bfb646f {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05915.WGS.N.hg38 C3N-05915 LSCC WGS blood_normal CPT0322100002 559686d4-6154-46cb-9117-0f8891718a04_wgs_gdc_realn.bam 70275815907 BAM harmonized CPTAC3 e12e825f-4ce5-4a46-8f95-1c68bc93eb39 10f36d55587937a2d9c1bf4f0f9903db {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05915.WGS.T C3N-05915 LSCC WGS tumor CPT0322060006 CPT0322060006.WholeGenome.RP-2158.bam 25921492516 BAM submitted_aligned CPTAC3 31afeab1-a2f4-461a-9540-a0158665c47d 5d3fa4285d4b39b4b7929281d7a0290e {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.WGS.T.hg38 C3N-05915 LSCC WGS tumor CPT0322060006 3c742abb-e129-49e8-92cf-6af9ce1804eb_wgs_gdc_realn.bam 75696480525 BAM harmonized CPTAC3 d5ffc59c-b2ae-4689-b4d0-6547a2d77ae3 0863ea98449f65908552fdbe92674481 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.WXS.A C3N-05915 LSCC WXS tissue_normal CPT0322070006 CPT0322070006.WholeExome.RP-1303.bam 22575022794 BAM submitted_aligned CPTAC3 0f5b1cba-7268-4789-9272-ece1d44539ef 80aa79192e35476bd8069d4adc71421a {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.WXS.A.hg38 C3N-05915 LSCC WXS tissue_normal CPT0322070006 ffbc2bf8-fd2e-40e0-9c3b-b6e8903358f9_wxs_gdc_realn.bam 31312040802 BAM harmonized CPTAC3 d31c6fb2-1de2-4327-87f0-e03b6ab10690 35f8ee92f75736518d89a619b60182f7 {"aliquot_tag": "ALQ_afb30c79", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05915.WXS.N C3N-05915 LSCC WXS blood_normal CPT0322100002 CPT0322100002.WholeExome.RP-1303.bam 23205120507 BAM submitted_aligned CPTAC3 72e67ef4-4a2c-4389-911b-cc63a5ad2767 26b2b6b85701e2a2b8343a1612003f5c {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05915.WXS.N.hg38 C3N-05915 LSCC WXS blood_normal CPT0322100002 559686d4-6154-46cb-9117-0f8891718a04_wxs_gdc_realn.bam 31382017809 BAM harmonized CPTAC3 6a2f9466-fbdb-46f9-b42b-4df45a6af31f 5bb9548ddc4dfbb5bee4c9a2b0d5cd6e {"aliquot_tag": "ALQ_d1a2c7d5", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05915.WXS.T C3N-05915 LSCC WXS tumor CPT0322060006 CPT0322060006.WholeExome.RP-1303.bam 40773877575 BAM submitted_aligned CPTAC3 6efec94b-63d6-41f1-b6ed-227d61a4847e 801de8a7014d3dc15f0385e10f168d84 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05915.WXS.T.hg38 C3N-05915 LSCC WXS tumor CPT0322060006 3c742abb-e129-49e8-92cf-6af9ce1804eb_wxs_gdc_realn.bam 56671609756 BAM harmonized CPTAC3 ab428707-e067-4fd9-9212-ba45fb831ea0 db7b4a1d130e7053b6bd31586b226418 {"aliquot_tag": "ALQ_92d325c9", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05919.RNA-Seq.chimeric.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.chimeric.gdc_realn.bam 86175370 BAM chimeric harmonized CPTAC3 b4de08d8-514f-40fd-9f79-0f8930bca1ea 093b1ad4fc6c4500e351c1557bd06105 {"aliquot_tag": "ALQ_3655213d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05919.RNA-Seq.genomic.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.genomic.gdc_realn.bam 6556954948 BAM genomic harmonized CPTAC3 d41715a4-7109-4d1a-99f6-896fa4f180a7 f706bbe8edf201c88357d375208855cf {"aliquot_tag": "ALQ_3655213d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05919.RNA-Seq.S25_R1.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R1_001.fastq.gz 4290202054 FASTQ S25_R1 submitted_unaligned CPTAC3 4b77fd39-4481-4d90-9eb3-bfa97b3b8c8c 4ee1759a952c3f5877c46416aa0b1c1a {"aliquot_tag": "ALQ_3655213d", "sample": "S25", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05919.RNA-Seq.S25_R2.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R2_001.fastq.gz 4440463017 FASTQ S25_R2 submitted_unaligned CPTAC3 c6435c1d-d80e-45c6-aeac-0b56a4cbd776 ae102947aeca231522eb29252b19fcc4 {"aliquot_tag": "ALQ_3655213d", "sample": "S25", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05919.RNA-Seq.transcriptome.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.transcriptome.gdc_realn.bam 5951335402 BAM transcriptome harmonized CPTAC3 cf2e2a5e-330f-45fc-85d0-f8671a96afaf 09623ee186dffb5a3d1d62abbbfe8caa {"aliquot_tag": "ALQ_3655213d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.MethArray.Green.A C3N-05923 LSCC Methylation_Array tissue_normal CPT0322390006 204367490084_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 956ee02e-a209-466f-b9dc-fba625fd1e5f 483fc33fc8ae0908c19b35f3ab72d006 {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.MethArray.Green.T C3N-05923 LSCC Methylation_Array tumor CPT0322380006 204367400148_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 de90dddf-3cec-4c35-a334-4fc28caba173 3d0d263cbd0abbd6fa80401085e7dc59 {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.MethArray.Red.A C3N-05923 LSCC Methylation_Array tissue_normal CPT0322390006 204367490084_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 c31849cd-29c0-4ff0-85fb-e351e35ef81e 151c751b0332006d6e1519482da577fa {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.MethArray.Red.T C3N-05923 LSCC Methylation_Array tumor CPT0322380006 204367400148_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 f4b892f3-cc6e-492d-b6b5-7441308e5562 f044ead12d78d2d20bdcff5f7f66273f {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.miRNA-Seq.A.hg38 C3N-05923 LSCC miRNA-Seq tissue_normal CPT0322390009 a9fbb10b-f3c0-4b09-a69f-b0d801a91b67_mirnaseq_gdc_realn.bam 347724053 BAM harmonized CPTAC3 bf3183e3-2933-4d85-a6dd-220e06371af4 02a3a6695886e0087e7b4c913e2cf787 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.miRNA-Seq.S13_L001_R1.A C3N-05923 LSCC miRNA-Seq tissue_normal CPT0322390009 200325_UNC31-K00269_0272_AHHC2NBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 313226873 BAM S13_L001_R1 submitted_unaligned CPTAC3 6b1e3b20-36a1-4122-89b7-d2ea311c7aeb 269a1dd375bfd593ad90f4d4c023c2e4 {"aliquot_tag": "ALQ_6a8dd27", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.miRNA-Seq.S25_L007_R1.T C3N-05923 LSCC miRNA-Seq tumor CPT0322380009 200224_UNC31-K00269_0267_AHC722BBXY_ACTGAT_S25_L007_R1_001.unaln.bam 224888474 BAM S25_L007_R1 submitted_unaligned CPTAC3 e17c359f-1ae2-4368-af53-bda0db877ae1 4e74529e85d26ea997bcbbe640a4fa04 {"aliquot_tag": "ALQ_3bc8f497", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.miRNA-Seq.T.hg38 C3N-05923 LSCC miRNA-Seq tumor CPT0322380009 dcb10878-d254-428e-8de9-ad94d6729a25_mirnaseq_gdc_realn.bam 246121106 BAM harmonized CPTAC3 ba455b79-338d-4da7-944d-81f1f6482a9e c43594c34e5780d2915e010f42d4117c {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.RNA-Seq.chimeric.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.chimeric.gdc_realn.bam 56468768 BAM chimeric harmonized CPTAC3 86958c49-4aca-47e1-83d8-5b5a00237a92 8a3e221097655ac0463ecf41468e6559 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.RNA-Seq.chimeric.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.chimeric.gdc_realn.bam 43187938 BAM chimeric harmonized CPTAC3 0cdcf0a8-b207-4f72-b78e-dc99e41ea2bf e595d40ab1a7ae5d9af239efad1582f5 {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.RNA-Seq.genomic.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.genomic.gdc_realn.bam 6632162384 BAM genomic harmonized CPTAC3 4530b0b4-e78e-4613-acf2-26303aee1ada 7809bf0553a145b36b27f17dc6654319 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.RNA-Seq.genomic.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.genomic.gdc_realn.bam 9024575022 BAM genomic harmonized CPTAC3 debafeb8-d9bb-4c8a-879e-05b58cf14f2c ecd7298540bbd90871083e80ba24e496 {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.RNA-Seq.S21_L006_R1.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3354127044 FASTQ S21_L006_R1 submitted_unaligned CPTAC3 ee71d79c-d2b9-465c-9991-f983ec6ddb35 356bf90bcb8667fc649d6e3ca034623e {"aliquot_tag": "ALQ_6a8dd27", "sample": "S21", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.RNA-Seq.S21_L006_R2.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3498431789 FASTQ S21_L006_R2 submitted_unaligned CPTAC3 cce57f46-dee9-4d01-a95b-c25c7a52247c 2cb1a56bf88b16e827b08035d3cbe35a {"aliquot_tag": "ALQ_6a8dd27", "sample": "S21", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.RNA-Seq.S9_L003_R1.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4494548642 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 90004f61-49e4-496c-9a0b-f1bdf504c25f 30629344159280d005291b178b60764a {"aliquot_tag": "ALQ_3bc8f497", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.RNA-Seq.S9_L003_R2.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4862205138 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 8ba0686a-4c85-4ffa-a7dc-113295780a61 67289665fe5f4553f0bc84e774d93b1d {"aliquot_tag": "ALQ_3bc8f497", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.RNA-Seq.transcriptome.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.transcriptome.gdc_realn.bam 9256406149 BAM transcriptome harmonized CPTAC3 7d7a9877-39e3-462e-abcd-35e208a51fca 54b0776505b3abcd7eab207a77bc6cd0 {"aliquot_tag": "ALQ_6a8dd27", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.RNA-Seq.transcriptome.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.transcriptome.gdc_realn.bam 12663647383 BAM transcriptome harmonized CPTAC3 893ea809-8f61-4c7e-a1d9-94138f614d22 a7668273d8797db8ac2108cef18cd32b {"aliquot_tag": "ALQ_3bc8f497", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.WGS.N C3N-05923 LSCC WGS blood_normal CPT0322420002 CPT0322420002.WholeGenome.RP-2158.bam 22247182076 BAM submitted_aligned CPTAC3 7db87f17-02a0-420f-8c8e-f850d21b4ab2 8f67aad530decb3015ae9daef4626791 {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05923.WGS.N C3N-05923 LSCC WGS blood_normal CPT0322420002 CPT0322420002.WholeGenome.RP-2158.bam 22277769516 BAM submitted_aligned CPTAC3 892869e2-683c-4db0-aec6-f1a626258b3b 597f1ae298e61d6135c7735f990a1d54 {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05923.WGS.N.hg38 C3N-05923 LSCC WGS blood_normal CPT0322420002 e7d93998-6d00-4922-885b-9cbf6087243a_wgs_gdc_realn.bam 66415570499 BAM harmonized CPTAC3 97e58f07-e0c8-401b-8cc0-ca458145607e 63e724ca8dda564470aec53949c1c7ce {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05923.WGS.T C3N-05923 LSCC WGS tumor CPT0322380006 CPT0322380006.WholeGenome.RP-2158.bam 31438543683 BAM submitted_aligned CPTAC3 436fc85b-cc65-47cc-860b-7dc3a0b30d97 379f6da52e61085d21de7c0c2b44009c {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.WGS.T C3N-05923 LSCC WGS tumor CPT0322380006 CPT0322380006.WholeGenome.RP-2158.bam 31478177831 BAM submitted_aligned CPTAC3 7b9c1d26-7f40-4daa-a16d-ba86c8ddc10c e44fbe0f7c7cb88846cde2806171647d {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05923.WGS.T.hg38 C3N-05923 LSCC WGS tumor CPT0322380006 c318d792-3d62-40bb-87bd-a98703d4c4b2_wgs_gdc_realn.bam 98152965775 BAM harmonized CPTAC3 5c0f4d7b-2228-4bb3-b955-0a61ba2b0705 09e356642cf0f519a2e87d5206d5d590 {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.WXS.A C3N-05923 LSCC WXS tissue_normal CPT0322390006 CPT0322390006.WholeExome.RP-1303.bam 22412655181 BAM submitted_aligned CPTAC3 03639ae7-4960-496c-bdc5-aefbb94e0a05 09f4142d7e6e7a66a1d66c495f1139a0 {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.WXS.A.hg38 C3N-05923 LSCC WXS tissue_normal CPT0322390006 03994d86-20b1-4fd7-9082-9b739f74e4f7_wxs_gdc_realn.bam 30999962689 BAM harmonized CPTAC3 b2853c26-c742-41ac-a4e6-f4eadb4db96a 9002d6aea8b0ab8a4d19f362b633ac3f {"aliquot_tag": "ALQ_9617c0b6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05923.WXS.N C3N-05923 LSCC WXS blood_normal CPT0322420002 CPT0322420002.WholeExome.RP-1303.bam 29291931878 BAM submitted_aligned CPTAC3 a2e7c19e-e6d8-40dd-bb98-106e9b85aa16 60436c47f1458dd06a590ee41ab06c9e {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05923.WXS.N.hg38 C3N-05923 LSCC WXS blood_normal CPT0322420002 e7d93998-6d00-4922-885b-9cbf6087243a_wxs_gdc_realn.bam 39821748678 BAM harmonized CPTAC3 7d06c854-91cd-4691-81d7-c1b570e135ca dece657f9514f3069580e574f689c658 {"aliquot_tag": "ALQ_fbaf0506", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05923.WXS.T C3N-05923 LSCC WXS tumor CPT0322380006 CPT0322380006.WholeExome.RP-1303.bam 20110787287 BAM submitted_aligned CPTAC3 0230fd2c-4308-45cd-afa8-fbde0e94805d ec99fec6cbee0a773ae3a53da78fd583 {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05923.WXS.T.hg38 C3N-05923 LSCC WXS tumor CPT0322380006 c318d792-3d62-40bb-87bd-a98703d4c4b2_wxs_gdc_realn.bam 27398526372 BAM harmonized CPTAC3 1ee8bd8a-e70b-4363-8b6d-69688e36c4f3 3df2f15d4f03226266e364eb109b360b {"aliquot_tag": "ALQ_ab77e906", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.MethArray.Green.A C3N-05929 LSCC Methylation_Array tissue_normal CPT0322540006 204367470157_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dcd7d99b-d2a3-4a56-a45f-170d02d45006 714dc474affc37ff07a6bd55415ed9d5 {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.MethArray.Green.T C3N-05929 LSCC Methylation_Array tumor CPT0322530006 204372030161_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 bace93d1-a6f3-4f17-be8f-f3db5e994bfd 962e3f0d702b05f1180ea90769d519d1 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.MethArray.Red.A C3N-05929 LSCC Methylation_Array tissue_normal CPT0322540006 204367470157_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 5323923c-786e-4dea-be03-333bce28e69b 03ffdef1308e31a9744f00bf4df5abae {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.MethArray.Red.T C3N-05929 LSCC Methylation_Array tumor CPT0322530006 204372030161_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 78e2f9c6-7c9c-47d7-ae3f-89d100775d9d b69e44302fd0d3ba81fd286d4e874c71 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.miRNA-Seq.A.hg38 C3N-05929 LSCC miRNA-Seq tissue_normal CPT0322540009 0cc8fee9-3beb-49c3-bc66-9a1684575608_mirnaseq_gdc_realn.bam 280114513 BAM harmonized CPTAC3 863c69ce-0329-4b1b-92a3-cd5980b4a794 0f6fb699100c3608b9f196ae4bb3fc90 {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.miRNA-Seq.S14_L001_R1.A C3N-05929 LSCC miRNA-Seq tissue_normal CPT0322540009 200325_UNC31-K00269_0272_AHHC2NBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 255308167 BAM S14_L001_R1 submitted_unaligned CPTAC3 a294d284-e383-47fd-81ae-d5b4ee89dd49 b47f993f240325c6d78a035537e05f94 {"aliquot_tag": "ALQ_2861fa8b", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.miRNA-Seq.S26_L007_R1.T C3N-05929 LSCC miRNA-Seq tumor CPT0322530009 200224_UNC31-K00269_0267_AHC722BBXY_ATGAGC_S26_L007_R1_001.unaln.bam 193939181 BAM S26_L007_R1 submitted_unaligned CPTAC3 a54ddf21-1e74-46d0-b623-0442f8a0ec8e c26f3fdb12b7bf7cdb00e22f555290b9 {"aliquot_tag": "ALQ_9a41269b", "sample": "S26", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.miRNA-Seq.T.hg38 C3N-05929 LSCC miRNA-Seq tumor CPT0322530009 4670cbb0-ebc9-4f28-a779-68fdb88be0b8_mirnaseq_gdc_realn.bam 218315510 BAM harmonized CPTAC3 c86d52ea-94a8-41b1-96a0-54edd2804dc7 6a005a756dcf208c5b583103449a91d3 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.RNA-Seq.chimeric.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.chimeric.gdc_realn.bam 72864518 BAM chimeric harmonized CPTAC3 5ad43e57-dff4-4223-bb03-23a8250e8fbf c98343d5f977bb1de9411ea75fd2bfde {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.RNA-Seq.chimeric.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.chimeric.gdc_realn.bam 34475110 BAM chimeric harmonized CPTAC3 3768fa94-17c2-4bdd-b1b9-8ca818aa313d be662e0dc4143572b5c914bf15475189 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.RNA-Seq.genomic.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.genomic.gdc_realn.bam 9311387050 BAM genomic harmonized CPTAC3 7e659049-b57c-4afa-b2b0-5f4824bd2231 57b82b3e4ca32d8f7c13c16e2b6a2575 {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.RNA-Seq.genomic.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.genomic.gdc_realn.bam 7277075094 BAM genomic harmonized CPTAC3 937cf40f-56e0-424f-a413-05258a0623d4 aa7b2720dfd5db75bf77d653cea5a2f8 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.RNA-Seq.S10_L003_R1.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R1_001.fastq.gz 3571465475 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 d22afb8c-5cf5-4e98-b58b-39798d2cbae3 11d4edad3bcee1bd7b2361240a66b8c9 {"aliquot_tag": "ALQ_9a41269b", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.RNA-Seq.S10_L003_R2.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R2_001.fastq.gz 3893882529 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 200ade6e-45a6-4b14-b570-23c1adc6d051 68ad2bb5603cbbb5a26f3ede5a45cbd1 {"aliquot_tag": "ALQ_9a41269b", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.RNA-Seq.S22_L006_R1.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R1_001.fastq.gz 4806108331 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 9cbe6635-995a-411f-883c-d8bcfaed58d2 6cca2a8f4caebb22319876f09fa0bd44 {"aliquot_tag": "ALQ_2861fa8b", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.RNA-Seq.S22_L006_R2.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R2_001.fastq.gz 5032367135 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 374007a8-1849-4b79-be60-5bd503d26be3 5faeb707c72344111832a35e080aa426 {"aliquot_tag": "ALQ_2861fa8b", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.RNA-Seq.transcriptome.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.transcriptome.gdc_realn.bam 13515620244 BAM transcriptome harmonized CPTAC3 26bc131a-3f56-4978-959a-9bd5a93d149b ad19a8e8612c723673d5e640c2093721 {"aliquot_tag": "ALQ_2861fa8b", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.RNA-Seq.transcriptome.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.transcriptome.gdc_realn.bam 9463435440 BAM transcriptome harmonized CPTAC3 a7038143-8667-466f-a668-ecec7c56fa26 4bcfe09462f5ca8020dd6bdf8131d003 {"aliquot_tag": "ALQ_9a41269b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.WGS.N C3N-05929 LSCC WGS blood_normal CPT0322570002 CPT0322570002.WholeGenome.RP-2158.bam 22255632877 BAM submitted_aligned CPTAC3 4541b197-1013-4503-8f42-4a85fb176f20 e780fde0db80098dd0d8793ee4b8262b {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05929.WGS.N C3N-05929 LSCC WGS blood_normal CPT0322570002 CPT0322570002.WholeGenome.RP-2158.bam 22283419425 BAM submitted_aligned CPTAC3 2c32ce90-3d11-4bce-9c54-6fee6f91d558 a8c1f85a57740a9d92bc8daaf40bf598 {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05929.WGS.N.hg38 C3N-05929 LSCC WGS blood_normal CPT0322570002 e3bf416b-3d08-4d1b-bec4-808e55c7788c_wgs_gdc_realn.bam 67323248287 BAM harmonized CPTAC3 823dda5b-ff15-4a66-b28b-de0632850623 89a756316e1456f058be89545b988157 {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05929.WGS.T C3N-05929 LSCC WGS tumor CPT0322530006 CPT0322530006.WholeGenome.RP-2158.bam 22994658353 BAM submitted_aligned CPTAC3 03dfac78-cdb2-46b9-b3f9-bc719f4edfcc 6bff1e024b00edbdc61e1be903c8dad7 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.WGS.T C3N-05929 LSCC WGS tumor CPT0322530006 CPT0322530006.WholeGenome.RP-2158.bam 23024296541 BAM submitted_aligned CPTAC3 3ed5082c-0263-406c-bd80-059ccc944cba ea03736afb2e21c4f49576e6e550cbc3 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05929.WGS.T.hg38 C3N-05929 LSCC WGS tumor CPT0322530006 23fa88f9-9293-406b-bc21-2928ff12bc8b_wgs_gdc_realn.bam 68602850602 BAM harmonized CPTAC3 c5d518a3-fc69-4d7b-a719-0aad38abe43a 0dd66d087db160ca4fa172cb3974fa79 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.WXS.A C3N-05929 LSCC WXS tissue_normal CPT0322540006 CPT0322540006.WholeExome.RP-1303.bam 24478120658 BAM submitted_aligned CPTAC3 3709af27-dfe1-4ac4-a53c-d7574b1dbada 209141ed01dcc472d50b1a40199980d6 {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.WXS.A.hg38 C3N-05929 LSCC WXS tissue_normal CPT0322540006 86570644-b317-485c-bda9-6f773798a922_wxs_gdc_realn.bam 33407980667 BAM harmonized CPTAC3 93ab8025-d709-42d3-b04d-808d95806cb7 57ca6d02a628cd77968b5d7e9d01ee3e {"aliquot_tag": "ALQ_b8dee71a", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05929.WXS.N C3N-05929 LSCC WXS blood_normal CPT0322570002 CPT0322570002.WholeExome.RP-1303.bam 21754055864 BAM submitted_aligned CPTAC3 4ae105f1-5a5b-4893-bbdc-598f241495b1 701c6f1a37b11ebd618e1f935ecd8a7e {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05929.WXS.N.hg38 C3N-05929 LSCC WXS blood_normal CPT0322570002 e3bf416b-3d08-4d1b-bec4-808e55c7788c_wxs_gdc_realn.bam 29330029854 BAM harmonized CPTAC3 df539074-52ef-4708-8e48-fef807654ea1 cf6102d7bb3013e59f8158bed10d1847 {"aliquot_tag": "ALQ_f81359d3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05929.WXS.T C3N-05929 LSCC WXS tumor CPT0322530006 CPT0322530006.WholeExome.RP-1303.bam 23508324471 BAM submitted_aligned CPTAC3 14a99afc-f095-46d1-9d1b-b1af3451575c c902f4e82f4031a8e4f0ef90971e7610 {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05929.WXS.T.hg38 C3N-05929 LSCC WXS tumor CPT0322530006 23fa88f9-9293-406b-bc21-2928ff12bc8b_wxs_gdc_realn.bam 32069115005 BAM harmonized CPTAC3 7f31c9ed-2dd8-4bb3-a9bc-e3872219f915 88398555bd2d8e927ea2c6aa2484f2ae {"aliquot_tag": "ALQ_afe3b0a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.MethArray.Green.T C3N-05991 GBM Methylation_Array tumor CPT0378550006 205555390157_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e1bd1e3c-68ca-4e80-a830-56bced50c141 311b8d158c6182081434d63131d7a0f2 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.MethArray.Red.T C3N-05991 GBM Methylation_Array tumor CPT0378550006 205555390157_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 32afbfd3-a0a5-4a19-8323-a110da686f9e ae187eb0e08c2e84707259fad3c03129 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.miRNA-Seq.S33_L007_R1.T C3N-05991 GBM miRNA-Seq tumor CPT0378550009 201209_UNC32-K00270_0265_AHJ55WBBXY_GTAGAG_S33_L007_R1_001.unaln.bam 330675528 BAM S33_L007_R1 submitted_unaligned CPTAC3 2063c44a-250e-4eb9-86ec-0fb033ec0fc3 8b4351e5a1b9d02a3fd68719d50b104e {"aliquot_tag": "ALQ_f9918211", "sample": "S33", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.miRNA-Seq.T.hg38 C3N-05991 GBM miRNA-Seq tumor CPT0378550009 abd9c74f-2f86-4d33-a671-88896aec0509_mirnaseq_gdc_realn.bam 377206395 BAM harmonized CPTAC3 d802bdcc-83a8-4d67-a3b5-51d07dae66c1 bcda18ea5b1b731f3bbc42149e7a1ebf {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.RNA-Seq.chimeric.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.chimeric.gdc_realn.bam 357388540 BAM chimeric harmonized CPTAC3 fd79f425-5690-4046-8e42-967c58119955 ead5b9312579cc65d0e98a34c52d3cf7 {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.RNA-Seq.genomic.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.genomic.gdc_realn.bam 7699962451 BAM genomic harmonized CPTAC3 5584991c-ac0e-4df5-add0-4f2303223862 27c4973201f1d1b05881a0165310bf25 {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.RNA-Seq.S24_L006_R1.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ S24_L006_R1 submitted_unaligned CPTAC3 f3fdfc5e-7311-4d86-ac76-83d954c22674 1d0265548cd94912e5ec5ba36bd713f6 {"aliquot_tag": "ALQ_f9918211", "sample": "S24", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.RNA-Seq.S24_L006_R2.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ S24_L006_R2 submitted_unaligned CPTAC3 8f4a08f1-2571-471f-9eac-c774275f33f4 fc645b0cbf17515a41a187a5ecb9018c {"aliquot_tag": "ALQ_f9918211", "sample": "S24", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.RNA-Seq.transcriptome.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.transcriptome.gdc_realn.bam 7843415219 BAM transcriptome harmonized CPTAC3 63be8b58-ce8a-4abf-b8b0-f010e1268ee1 effbd4a0fe748b03a1672c9dda690524 {"aliquot_tag": "ALQ_f9918211", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.WGS.N C3N-05991 GBM WGS blood_normal CPT0378610002 CPT0378610002.WholeGenome.RP-2158.bam 23981701662 BAM submitted_aligned CPTAC3 f5795e82-aba0-48f6-8047-c5c550426671 300e104dd130cac4fa652133a388e26b {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05991.WGS.N.hg38 C3N-05991 GBM WGS blood_normal CPT0378610002 099752ff-7fa5-4eb0-831a-09e5a211d5c3_wgs_gdc_realn.bam 71819625554 BAM harmonized CPTAC3 39243f84-1aee-49d4-8a00-32c396a850f3 c0b6bcaf135ae44980f7501e4341fa0c {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05991.WGS.T C3N-05991 GBM WGS tumor CPT0378550006 CPT0378550006.WholeGenome.RP-2158.bam 29842642374 BAM submitted_aligned CPTAC3 28a48366-c183-4b4b-ab8b-bdb8b3cc5b82 5c107443e870154fe136067aeb95f675 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.WGS.T.hg38 C3N-05991 GBM WGS tumor CPT0378550006 0ca72fda-2cdf-415a-b5a4-53470bf3af60_wgs_gdc_realn.bam 93840833290 BAM harmonized CPTAC3 050d8938-f282-41da-94a0-94fefe053d4e 4e782040321db5c4fb97cade03f42653 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.WXS.N C3N-05991 GBM WXS blood_normal CPT0378610002 CPT0378610002.WholeExome.RP-1303.bam 31487695247 BAM submitted_aligned CPTAC3 182ccfb9-6805-4994-ad0f-98fc9a780909 64f110db084d288037d5be7e0145804e {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-05991.WXS.N.hg38 C3N-05991 GBM WXS blood_normal CPT0378610002 099752ff-7fa5-4eb0-831a-09e5a211d5c3_wxs_gdc_realn.bam 43082793097 BAM harmonized CPTAC3 0650ae98-e90e-4ce8-a835-703349dc966e 0c7196c7b6a771a012f6ec78d6dda36d {"aliquot_tag": "ALQ_1d578ff7", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C3N-05991.WXS.T C3N-05991 GBM WXS tumor CPT0378550006 CPT0378550006.WholeExome.RP-1303.bam 20864411998 BAM submitted_aligned CPTAC3 c7d2d028-afc9-491c-b8bc-5e4d86ec2394 46384f411226104fc08e84962f85a622 {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05991.WXS.T.hg38 C3N-05991 GBM WXS tumor CPT0378550006 0ca72fda-2cdf-415a-b5a4-53470bf3af60_wxs_gdc_realn.bam 28678600810 BAM harmonized CPTAC3 7c48aae6-c19b-46e4-a8aa-205117088f07 8cdaac08309aab7889b8881c169b834d {"aliquot_tag": "ALQ_692e9f80", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C464694.DUP_7319b796.MethArray.Green.T C464694 GBM Methylation_Array tumor 7316UP-1220 205854140144_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 212c2e15-a962-429c-bd1f-9f5f1177282d 50b3c3adde4024bdf3b8376f048cfcaf {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.DUP_7319b796.MethArray.Red.T C464694 GBM Methylation_Array tumor 7316UP-1220 205854140144_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 4321c33c-0477-4178-8f26-4035aa8920e3 53a5efeb91fec196485c5d818b20cdf7 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.DUP_7319b796.WGS.T C464694 GBM WGS tumor 7316UP-1220 7316UP-1220.WholeGenome.RP-2158.bam 50906731344 BAM submitted_aligned CPTAC3 2cfe9f7d-a40a-4b0d-92de-8dd2e369dfe9 5839ad43a00ff69295864978d1bfba47 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.DUP_7319b796.WGS.T.hg38 C464694 GBM WGS tumor 7316UP-1220 737a37b7-31a5-4187-a4fa-5e7171bb6569_wgs_gdc_realn.bam 150532430539 BAM harmonized CPTAC3 77c6fb07-df6b-4048-a13a-4dd4df35c0e2 bc8ca27c36b93e32f2b52d9175adfd56 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.DUP_7319b796.WXS.T C464694 GBM WXS tumor 7316UP-1220 7316UP-1220.WholeExome.RP-1303.bam 22942475909 BAM submitted_aligned CPTAC3 1b1eb9c9-e46d-4867-8ca9-7b90245fb6ac 023d4b7af206ae23cf22b1cef24f44e6 {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.DUP_7319b796.WXS.T.hg38 C464694 GBM WXS tumor 7316UP-1220 737a37b7-31a5-4187-a4fa-5e7171bb6569_wxs_gdc_realn.bam 31018496566 BAM harmonized CPTAC3 00eb9000-e8b4-4b57-8f08-45b92aaba916 b5f769d8312eda67025f8c777f7dab7b {"aliquot_tag": "DUP_7319b796", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C464694.MethArray.Green.R C464694 GBM Methylation_Array recurrent_tumor 7316UP-2165 205854140148_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1d5b76d6-61d0-4d7e-b5f3-f9d1f6032a9b 26d0cb9fa695b6c5c1bee1d6fe1404af {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C464694.MethArray.Red.R C464694 GBM Methylation_Array recurrent_tumor 7316UP-2165 205854140148_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 ce4c594a-0bee-4a5f-b1be-4a8e5ee49bdb 88c6ccf21a239c159ac3a398483b3227 {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C464694.miRNA-Seq.S19_L003_R1.T C464694 GBM miRNA-Seq tumor 7316UP-1220-1104806 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 369818581 BAM S19_L003_R1 submitted_unaligned CPTAC3 c199d8d6-379a-4af8-a9d4-ed6e4b614fb0 ea112e1b36fed716827ebd89f58efe16 {"aliquot_tag": "ALQ_b4191726", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.miRNA-Seq.T.hg38 C464694 GBM miRNA-Seq tumor 7316UP-1220-1104806 207cc3a9-ce33-45cd-ae40-b736dfee9de2_mirnaseq_gdc_realn.bam 450526376 BAM harmonized CPTAC3 497bbdbd-6e1b-40a6-b101-541d27a5a22c 61480a9842dbf1edc62578fb947ad66e {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.RNA-Seq.chimeric.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.chimeric.gdc_realn.bam 87309393 BAM chimeric harmonized CPTAC3 e7928408-7006-428e-9833-d169af22ef92 718ce263befc7d86f9f63d16bf528d81 {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.RNA-Seq.genomic.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.genomic.gdc_realn.bam 9062562582 BAM genomic harmonized CPTAC3 cd31d639-0b9c-406d-9849-bfef9baefc0a 195eedd31a17bed3a37067d36e755505 {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.RNA-Seq.S17_L005_R1.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 e953a951-3a91-442e-ad44-8ebde2357ba1 5233571714b1ad08855987a0e21637bf {"aliquot_tag": "ALQ_b4191726", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.RNA-Seq.S17_L005_R2.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R2_001.fastq.gz 4535404399 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 dfd4d083-3696-4f1a-9a7b-9613cb26d82d 40639d47dfecbf5ca2bf8b47b9bb8e1a {"aliquot_tag": "ALQ_b4191726", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.RNA-Seq.transcriptome.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.transcriptome.gdc_realn.bam 13857049571 BAM transcriptome harmonized CPTAC3 d7f8e5ba-68aa-421c-9c66-850b4d543f88 5e3e0cf4a2edf4bf941561b037f973cc {"aliquot_tag": "ALQ_b4191726", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.WGS.N C464694 GBM WGS blood_normal 7316UP-1220-1105273 7316UP-1220-1105273.WholeGenome.RP-2158.bam 58056642254 BAM submitted_aligned CPTAC3 8de7ce32-b53a-4bd8-83f9-e8584ffa7bd4 5c2d8a5c6b7e42314c9f21c2f30ebe68 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C464694.WGS.N.hg38 C464694 GBM WGS blood_normal 7316UP-1220-1105273 79ab7960-710a-4fb4-b7fb-d8d374ac0273_wgs_gdc_realn.bam 171009546064 BAM harmonized CPTAC3 bd0412f4-6d85-4fde-a8da-4da9f281836f 70005d6b3f73fc939c811e7938fc4e91 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C464694.WGS.R C464694 GBM WGS recurrent_tumor 7316UP-2165 7316UP-2165.WholeGenome.RP-2158.bam 59730720406 BAM submitted_aligned CPTAC3 49907439-eaca-4bc0-bb26-e5cf4ef4b055 824010f782891f63355558dcd5d5afe4 {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C464694.WGS.R.hg38 C464694 GBM WGS recurrent_tumor 7316UP-2165 21f8608a-3452-4c72-be68-f12c4c3ec33a_wgs_gdc_realn.bam 180690918935 BAM harmonized CPTAC3 1de50e6a-57e7-497f-a6fb-33d85aeda79a 138f245ecf718706592d724eb90b87ad {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C464694.WXS.N C464694 GBM WXS blood_normal 7316UP-1220-1105273 7316UP-1220-1105273.WholeExome.RP-1303.bam 34171762075 BAM submitted_aligned CPTAC3 ae674995-a428-4617-a594-a46bd0a14690 d4813def900172a4870d1e6c6d0701c9 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C464694.WXS.N.hg38 C464694 GBM WXS blood_normal 7316UP-1220-1105273 79ab7960-710a-4fb4-b7fb-d8d374ac0273_wxs_gdc_realn.bam 46629574666 BAM harmonized CPTAC3 51e69507-c1db-4630-bbd3-dfb6e176132b ed215e962448dd6047279570cd656868 {"aliquot_tag": "ALQ_3e1997dd", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C464694.WXS.R C464694 GBM WXS recurrent_tumor 7316UP-2165 7316UP-2165.WholeExome.RP-1303.bam 21435410858 BAM submitted_aligned CPTAC3 e065a5af-faad-4155-aebc-d191be6cc1fa 3e72c6c922523d3be5cb85fd89bcc47e {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C464694.WXS.R.hg38 C464694 GBM WXS recurrent_tumor 7316UP-2165 21f8608a-3452-4c72-be68-f12c4c3ec33a_wxs_gdc_realn.bam 29259564952 BAM harmonized CPTAC3 14392cb7-f165-4b08-8caf-bfd9a7875b72 16f16685f362bb5aa9303c0cdafe727d {"aliquot_tag": "ALQ_77ec97aa", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C464694.WXS.T C464694 GBM WXS tumor 7316UP-1220-1105271 7316UP-1220-1105271.WholeExome.RP-1303.bam 23752991278 BAM submitted_aligned CPTAC3 680f0ed2-f4b3-4831-afb6-1758fa985db4 188d88b682c63fd90a1737d0a62f4710 {"aliquot_tag": "ALQ_d017f6f1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C464694.WXS.T.hg38 C464694 GBM WXS tumor 7316UP-1220-1105271 31b51dd4-c4fe-4d97-ae09-698217519667_wxs_gdc_realn.bam 32446858344 BAM harmonized CPTAC3 44dd95c6-0058-43cc-8f40-781d00ea6f46 1daeb9e1a5ca1de2c08b2905e5489b11 {"aliquot_tag": "ALQ_d017f6f1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C524103.DUP_aee3de0f.MethArray.Green.T C524103 GBM Methylation_Array tumor 7316UP-1302 205705520032_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3304fdae-a424-42d5-b3a5-334d3f317c40 98f2561f12646c2454d007919c8b6410 {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.DUP_aee3de0f.MethArray.Red.T C524103 GBM Methylation_Array tumor 7316UP-1302 205705520032_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 53deb417-0eb3-46a7-a244-8f0be240118c 309ebf6b6e6a476d7ecf43744a1a5ace {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.DUP_aee3de0f.WGS.T C524103 GBM WGS tumor 7316UP-1302 7316UP-1302.WholeGenome.RP-2158.bam 55198852451 BAM submitted_aligned CPTAC3 fd71f293-e7f0-4982-abd7-1a510b432306 040393ee5d9d38028577bacd01834b1f {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.DUP_aee3de0f.WGS.T.hg38 C524103 GBM WGS tumor 7316UP-1302 4c95a675-d17a-40a7-b77f-a2389895f7fe_wgs_gdc_realn.bam 171540870167 BAM harmonized CPTAC3 a6ec178b-fa93-4486-9b6f-3d1f0392fa4e d25074048cea82003311bbdf8de284bf {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.DUP_aee3de0f.WXS.T C524103 GBM WXS tumor 7316UP-1302 7316UP-1302.WholeExome.RP-1303.bam 26476635087 BAM submitted_aligned CPTAC3 b9850345-daa3-4b02-af56-35927a4b6bab 4be8f0c6f0f30dba18708c1659351f58 {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.DUP_aee3de0f.WXS.T.hg38 C524103 GBM WXS tumor 7316UP-1302 4c95a675-d17a-40a7-b77f-a2389895f7fe_wxs_gdc_realn.bam 35777446418 BAM harmonized CPTAC3 35d02b21-b274-4b7c-ac81-9f4a5dd1176d 8ba56fb7f694a2c4c8571ccb88d9f37a {"aliquot_tag": "DUP_aee3de0f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C524103.DUP_d3942a4a.MethArray.Green.R C524103 GBM Methylation_Array recurrent_tumor 7316UP-1352 205555380005_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 56256210-86b4-458e-b7b2-b827e6be87d4 3e939bf3a12cd6f231f3c0cc6b3d5d48 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.DUP_d3942a4a.MethArray.Red.R C524103 GBM Methylation_Array recurrent_tumor 7316UP-1352 205555380005_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a819416b-204f-4b9f-ab2a-1f5cc4a5f5f5 d566d25faf9aaa6b4fab62f83556690a {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.DUP_d3942a4a.WGS.R C524103 GBM WGS recurrent_tumor 7316UP-1352 7316UP-1352.WholeGenome.RP-2158.bam 59412790773 BAM submitted_aligned CPTAC3 2806f70f-3e38-44d6-9b0a-fde23338695e e7cfeb715ac64f4da7a9af13eef31124 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.DUP_d3942a4a.WGS.R.hg38 C524103 GBM WGS recurrent_tumor 7316UP-1352 262ba396-1da5-4506-87a1-7f1c057067fd_wgs_gdc_realn.bam 175620533085 BAM harmonized CPTAC3 aeca55f7-fffe-481c-aec4-b35c0c520f17 90718821e3665c31c5c8270c419562d8 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.DUP_d3942a4a.WXS.R C524103 GBM WXS recurrent_tumor 7316UP-1352 7316UP-1352.WholeExome.RP-1303.bam 31780811964 BAM submitted_aligned CPTAC3 8cf5d4a7-4910-4ebf-867d-53de994c51e9 4dcf76068de8dc456650925b21daa7c6 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.DUP_d3942a4a.WXS.R.hg38 C524103 GBM WXS recurrent_tumor 7316UP-1352 262ba396-1da5-4506-87a1-7f1c057067fd_wxs_gdc_realn.bam 43148865520 BAM harmonized CPTAC3 90cbaa83-0603-40d1-82ad-5e0fe0328c15 3f57e83f5728156ddd6131ed7e4db023 {"aliquot_tag": "DUP_d3942a4a", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C524103.miRNA-Seq.R.hg38 C524103 GBM miRNA-Seq recurrent_tumor 7316UP-1352-1104794 2998ae4a-6249-4433-9396-64b6397ebc6f_mirnaseq_gdc_realn.bam 247802653 BAM harmonized CPTAC3 1b94a53a-0ef3-4a71-afa5-d2f214097cdc dbe1d8db3b86d44b5d0e460b8848830b {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.miRNA-Seq.S26_L002_R1.R C524103 GBM miRNA-Seq recurrent_tumor 7316UP-1352-1104794 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGATC_S26_L002_R1_001.unaln.bam 208885492 BAM S26_L002_R1 submitted_unaligned CPTAC3 9c405e8f-aa7c-485a-8e25-06319707110f 1e0bb4246702c71b19016c72d50ff083 {"aliquot_tag": "ALQ_8d2d6641", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.miRNA-Seq.S47_L003_R1.T C524103 GBM miRNA-Seq tumor 7316UP-1302-1104811 210817_UNC31-K00269_0302_AHLCTHBBXY_GGTAGC_S47_L003_R1_001.unaln.bam 327472214 BAM S47_L003_R1 submitted_unaligned CPTAC3 5d1e8951-7217-4a8c-8496-0c768deb3a80 14a020f5a81d7f56d1ea795881eac01d {"aliquot_tag": "ALQ_d8eb94bf", "sample": "S47", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.miRNA-Seq.T.hg38 C524103 GBM miRNA-Seq tumor 7316UP-1302-1104811 d8eec5bf-4983-4450-ade1-13008e3fab41_mirnaseq_gdc_realn.bam 364888323 BAM harmonized CPTAC3 5733b734-1d9e-4f9d-960e-fc0bb59e3f24 db5f162c7682f5a306426f0469263908 {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.RNA-Seq.chimeric.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.chimeric.gdc_realn.bam 29885194 BAM chimeric harmonized CPTAC3 8608c7fd-502d-487c-aff5-c3a208f761fe 6c3370dd204fede6e8bd5df63680ec9b {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.RNA-Seq.chimeric.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.chimeric.gdc_realn.bam 23427159 BAM chimeric harmonized CPTAC3 eafef641-2356-4ff5-a189-76d635dd90c9 fde72fcc9525162e915efde7542aafac {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.RNA-Seq.genomic.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.genomic.gdc_realn.bam 6665188457 BAM genomic harmonized CPTAC3 86de2fe4-4f4c-473a-9b3c-3ad8304105a2 54745cb7cc2aa266f0900a81d7836cec {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.RNA-Seq.genomic.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.genomic.gdc_realn.bam 9347625606 BAM genomic harmonized CPTAC3 b563f90b-b773-4b13-b4cf-a219780019ac 99451fbaf0bfa429dab40d1dc67694d0 {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.RNA-Seq.S18_L005_R1.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R1_001.fastq.gz 2870086974 FASTQ S18_L005_R1 submitted_unaligned CPTAC3 22a329b1-e16e-4f74-9776-f89111085a6e 75b51918415f8d52a6669e2a84032240 {"aliquot_tag": "ALQ_8d2d6641", "sample": "S18", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.RNA-Seq.S18_L005_R2.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R2_001.fastq.gz 3112261192 FASTQ S18_L005_R2 submitted_unaligned CPTAC3 1c2a8eae-a280-4bda-8053-bd1f73695d64 e28ce306b4b78cb6397887d886fce547 {"aliquot_tag": "ALQ_8d2d6641", "sample": "S18", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.RNA-Seq.S23_L006_R1.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R1_001.fastq.gz 3191813062 FASTQ S23_L006_R1 submitted_unaligned CPTAC3 afe00443-10de-4f18-b3cc-feda64a0ed5b 72421a542953b915705122033d30641b {"aliquot_tag": "ALQ_d8eb94bf", "sample": "S23", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.RNA-Seq.S23_L006_R2.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R2_001.fastq.gz 3472543146 FASTQ S23_L006_R2 submitted_unaligned CPTAC3 bbbc3545-1937-4afe-9d74-28e653c9f64d c76216a3140723e8a1bc386bfda0c766 {"aliquot_tag": "ALQ_d8eb94bf", "sample": "S23", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.RNA-Seq.transcriptome.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.transcriptome.gdc_realn.bam 14190096130 BAM transcriptome harmonized CPTAC3 11c689c7-8067-4932-80bc-954d9e41d076 7c6350a67434da864e9e972fc3acc3f5 {"aliquot_tag": "ALQ_8d2d6641", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.RNA-Seq.transcriptome.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.transcriptome.gdc_realn.bam 13208122277 BAM transcriptome harmonized CPTAC3 c0490bff-0058-40ff-8392-4e820eff1acd 90259b5a439958c02641dc1f4082209a {"aliquot_tag": "ALQ_d8eb94bf", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.WGS.N C524103 GBM WGS blood_normal 7316UP-1302-1105274 7316UP-1302-1105274.WholeGenome.RP-2158.bam 48734475668 BAM submitted_aligned CPTAC3 19ffaaad-e881-46e2-9a11-aecc70e586e9 26e89fab98de5e8d3edf3405a9444fef {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C524103.WGS.N.hg38 C524103 GBM WGS blood_normal 7316UP-1302-1105274 38c9ec6a-22fe-4fc1-a8b7-1f34921007e1_wgs_gdc_realn.bam 145571506954 BAM harmonized CPTAC3 9e1d34a0-bb29-454f-846b-28c073c1adcf edfaa4cbf7deaacf4cbed9e8dbdd647f {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C524103.WGS.R C524103 GBM WGS recurrent_tumor 7316UP-1352-1105258 7316UP-1352-1105258.WholeGenome.RP-2158.bam 42916365920 BAM submitted_aligned CPTAC3 d25caa5c-4a24-45b8-8a75-10961ce9a232 4eb9b6ec7ff3656a7aed711fe6811069 {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.WGS.R.hg38 C524103 GBM WGS recurrent_tumor 7316UP-1352-1105258 10c4c618-6b30-457c-8637-f9d771de41a6_wgs_gdc_realn.bam 128584101381 BAM harmonized CPTAC3 da74e522-7f6e-4a08-9e1d-30fb7c10dae8 2a11d7917486075522f3843b056ed56c {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.WXS.N C524103 GBM WXS blood_normal 7316UP-1302-1105274 7316UP-1302-1105274.WholeExome.RP-1303.bam 27656891961 BAM submitted_aligned CPTAC3 6eaa6ac2-44b3-4444-8c0d-a25e08e96978 d10ea801452598fef6324db044192b52 {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C524103.WXS.N.hg38 C524103 GBM WXS blood_normal 7316UP-1302-1105274 38c9ec6a-22fe-4fc1-a8b7-1f34921007e1_wxs_gdc_realn.bam 37550402224 BAM harmonized CPTAC3 bb991570-6c92-416b-a859-6ead7c509eb3 2df2ddc06d31500b958c921489aea6ce {"aliquot_tag": "ALQ_4bf02505", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C524103.WXS.R C524103 GBM WXS recurrent_tumor 7316UP-1352-1105258 7316UP-1352-1105258.WholeExome.RP-1303.bam 28254822885 BAM submitted_aligned CPTAC3 a987daf4-a1a0-4054-a9f2-53ef20187d07 9108f5e635dc411d943db3d5326f3667 {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C524103.WXS.R.hg38 C524103 GBM WXS recurrent_tumor 7316UP-1352-1105258 10c4c618-6b30-457c-8637-f9d771de41a6_wxs_gdc_realn.bam 38174594649 BAM harmonized CPTAC3 8c893ed0-d3bf-4019-8b73-afc8a5ab818f 895dc6884b5f3b7672dc37f3a9629757 {"aliquot_tag": "ALQ_9659c0e8", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C524103.WXS.T C524103 GBM WXS tumor 7316UP-1302-1105204 7316UP-1302-1105204.WholeExome.RP-1303.bam 24692723272 BAM submitted_aligned CPTAC3 cd8edce2-d841-4514-8c43-806379e3926f 150ea7817acf2a33804500465fc789aa {"aliquot_tag": "ALQ_4b1b3c2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C524103.WXS.T.hg38 C524103 GBM WXS tumor 7316UP-1302-1105204 ffd6163a-085f-4213-89e4-5bbc68bca404_wxs_gdc_realn.bam 33667946602 BAM harmonized CPTAC3 2b0b81ce-7556-4be8-bf5f-6f359239cc39 cdbcfd33ec885b6a35e8b42d775c8b9a {"aliquot_tag": "ALQ_4b1b3c2", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C621273.DUP_58508890.MethArray.Green.R C621273 GBM Methylation_Array recurrent_tumor 7316UP-1614 205854150039_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d8cfbfe2-4d7c-44f0-9511-db0c4f24acbf d48c9598695f205531feb9e92ff05102 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.DUP_58508890.MethArray.Red.R C621273 GBM Methylation_Array recurrent_tumor 7316UP-1614 205854150039_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a045d8ec-2939-4ab0-9efa-cf0136842163 f0b0c6cdca68232696d668581e0519cf {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.DUP_58508890.WGS.R C621273 GBM WGS recurrent_tumor 7316UP-1614 7316UP-1614.WholeGenome.RP-2158.bam 49320276389 BAM submitted_aligned CPTAC3 8b170826-9dea-4e38-89df-f3e04a145981 a267e6fe122f985c0e268f6907294475 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.DUP_58508890.WGS.R.hg38 C621273 GBM WGS recurrent_tumor 7316UP-1614 e9d2de13-33cd-4d7a-b218-763b81e81f25_wgs_gdc_realn.bam 143277667858 BAM harmonized CPTAC3 ec5d09c4-8da5-4e53-b3d9-5f2448acdff5 7085e87fbb69f5f127d646ff6f8129b7 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.DUP_58508890.WXS.R C621273 GBM WXS recurrent_tumor 7316UP-1614 7316UP-1614.WholeExome.RP-1303.bam 22247999080 BAM submitted_aligned CPTAC3 5743f054-3db2-40c1-8933-1e6cf7f0f395 f6715fec951aacd2d79117970bd01189 {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.DUP_58508890.WXS.R.hg38 C621273 GBM WXS recurrent_tumor 7316UP-1614 e9d2de13-33cd-4d7a-b218-763b81e81f25_wxs_gdc_realn.bam 30296335794 BAM harmonized CPTAC3 8de145d0-7789-4cbe-bbc3-3c00a03d9daf 078a75a6e5baa58b3efe405f25ab972d {"aliquot_tag": "DUP_58508890", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C621273.miRNA-Seq.R.hg38 C621273 GBM miRNA-Seq recurrent_tumor 7316UP-1614-1104792 a10e0ee5-451e-4614-a438-6719a57b9dbf_mirnaseq_gdc_realn.bam 299013874 BAM harmonized CPTAC3 b3bd0565-6ef0-4f02-8e32-5b9e2241fe6e 52ebbc3a76573a7cfa65da88924740c7 {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.miRNA-Seq.S22_L002_R1.R C621273 GBM miRNA-Seq recurrent_tumor 7316UP-1614-1104792 210817_UNC31-K00269_0302_AHLCTHBBXY_ACAGTG_S22_L002_R1_001.unaln.bam 252996380 BAM S22_L002_R1 submitted_unaligned CPTAC3 f854017d-3c0d-4e9e-9095-1cd25132dc95 ca4397fd5e5e20411f44fd0006020d2e {"aliquot_tag": "ALQ_6fe8b6c6", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.RNA-Seq.chimeric.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.chimeric.gdc_realn.bam 56654506 BAM chimeric harmonized CPTAC3 b19f9043-8552-4f42-9290-a04f22d0242a 6e11c9fa1af40c8d15d1bc59a8746f4c {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.RNA-Seq.genomic.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.genomic.gdc_realn.bam 7690057852 BAM genomic harmonized CPTAC3 5e634914-b72e-4e9c-ad83-1f7894b8bfa4 54a5a0a8cd018298f45a01549146463e {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.RNA-Seq.S20_L005_R1.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R1_001.fastq.gz 3601840825 FASTQ S20_L005_R1 submitted_unaligned CPTAC3 d2076f19-ae18-4b0f-90c0-009d307bac68 808a29599743ca7aa0440a43576f0c72 {"aliquot_tag": "ALQ_6fe8b6c6", "sample": "S20", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.RNA-Seq.S20_L005_R2.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R2_001.fastq.gz 3751660538 FASTQ S20_L005_R2 submitted_unaligned CPTAC3 208f978b-38ac-480f-ba8b-10672e7acf9d 5aaf59378fb20e4f5aaec8332e344222 {"aliquot_tag": "ALQ_6fe8b6c6", "sample": "S20", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.RNA-Seq.transcriptome.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.transcriptome.gdc_realn.bam 16518723618 BAM transcriptome harmonized CPTAC3 02c38852-7cca-4f7e-acb9-22680509bc3f 0604d55eee6716b4cad532b366c437f1 {"aliquot_tag": "ALQ_6fe8b6c6", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.WGS.N C621273 GBM WGS blood_normal 7316UP-1614-1105218 7316UP-1614-1105218.WholeGenome.RP-2158.bam 45901157027 BAM submitted_aligned CPTAC3 b9e0471e-bc5a-4f34-97ff-974f2200a169 d5cc3843ccc56f0d3f496611d8315419 {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C621273.WGS.N.hg38 C621273 GBM WGS blood_normal 7316UP-1614-1105218 75a887df-8b85-437d-9a2f-de23f833d084_wgs_gdc_realn.bam 132767966103 BAM harmonized CPTAC3 206b98ac-4f65-4b9e-9466-df037d335fda 1fee0ccd1a5d5f758760d9b1191f9743 {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C621273.WXS.N C621273 GBM WXS blood_normal 7316UP-1614-1105218 7316UP-1614-1105218.WholeExome.RP-1303.bam 20276203956 BAM submitted_aligned CPTAC3 5d3d6d7b-cca4-4002-837e-bad86e3a1a18 2e091433109db1addf0c857446f74279 {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C621273.WXS.N.hg38 C621273 GBM WXS blood_normal 7316UP-1614-1105218 75a887df-8b85-437d-9a2f-de23f833d084_wxs_gdc_realn.bam 27908882843 BAM harmonized CPTAC3 45c86f82-bcfc-4617-88fe-057ddca20656 21ad5fde86ef1197421daa92747e05af {"aliquot_tag": "ALQ_f993705e", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C621273.WXS.R C621273 GBM WXS recurrent_tumor 7316UP-1614-1105255 7316UP-1614-1105255.WholeExome.RP-1303.bam 25207962561 BAM submitted_aligned CPTAC3 682ffb5a-c41d-481c-890e-4eadbc23fb23 f55e27e3724705428c4e861319df1d0f {"aliquot_tag": "ALQ_e34ec9e7", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C621273.WXS.R.hg38 C621273 GBM WXS recurrent_tumor 7316UP-1614-1105255 4d9473f9-d9c4-4760-9eb4-4d1d2fad1300_wxs_gdc_realn.bam 34314709584 BAM harmonized CPTAC3 5b9fddc3-220e-4e53-ad75-a91acf6a54b8 a9032614cd87d4495467de4434917b29 {"aliquot_tag": "ALQ_e34ec9e7", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C621273.WXS.T C621273 GBM WXS tumor 7316UP-1405 7316UP-1405.WholeExome.RP-1303.bam 32756236316 BAM submitted_aligned CPTAC3 38c4cb2f-7d97-42b1-b7e5-7623a5c63d4c 52b9a5c73234edf7a6d3726c6d1c8f94 {"aliquot_tag": "ALQ_35c85d29", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C621273.WXS.T.hg38 C621273 GBM WXS tumor 7316UP-1405 3f83ce79-0cd9-4e7e-9352-726042aff7c8_wxs_gdc_realn.bam 44359010942 BAM harmonized CPTAC3 4daf5e7f-6a2a-4c49-a2cb-abb712bacfae 7a8d36bc1a00c6519bbc2bde6496ee0c {"aliquot_tag": "ALQ_35c85d29", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C685110.DUP_1d688b70.MethArray.Green.R C685110 GBM Methylation_Array recurrent_tumor 7316UP-1883 205707890115_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6a427e14-fd5d-408b-9e77-5829b1b658c6 fa958101b2ec015965e541c6d1490a5c {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.DUP_1d688b70.MethArray.Red.R C685110 GBM Methylation_Array recurrent_tumor 7316UP-1883 205707890115_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 459707ac-4a86-4040-af4f-e26d1e5d17aa 8c445ad6b9fddc448039c0d7b34bd044 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.DUP_1d688b70.WGS.R C685110 GBM WGS recurrent_tumor 7316UP-1883 7316UP-1883.WholeGenome.RP-2158.bam 45089603892 BAM submitted_aligned CPTAC3 a0633e65-c728-4b6f-82f1-d7a2cbbe5463 2b848756f864d1a8c4df51d0c893a141 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.DUP_1d688b70.WGS.R.hg38 C685110 GBM WGS recurrent_tumor 7316UP-1883 8b9f135a-a4e8-4710-9e29-d7f8884e9931_wgs_gdc_realn.bam 136525178503 BAM harmonized CPTAC3 b9284c83-5df4-4457-9b4d-287385ba3ca2 d7a50e8cd6334102e59e87903c2ea799 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.DUP_1d688b70.WXS.R C685110 GBM WXS recurrent_tumor 7316UP-1883 7316UP-1883.WholeExome.RP-1303.bam 30500869483 BAM submitted_aligned CPTAC3 04600742-4a51-4ad6-a18d-d4265c0dfad8 442d8d242df1c9b1fc51c4cd2b950340 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.DUP_1d688b70.WXS.R.hg38 C685110 GBM WXS recurrent_tumor 7316UP-1883 8b9f135a-a4e8-4710-9e29-d7f8884e9931_wxs_gdc_realn.bam 41309267209 BAM harmonized CPTAC3 ac908356-15d9-4fe6-8300-4d6bfcbc4062 142a51ed7c2bf25f0fa579fe211600e5 {"aliquot_tag": "DUP_1d688b70", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C685110.DUP_224ab8cc.MethArray.Green.T C685110 GBM Methylation_Array tumor 7316UP-1640 205705520087_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8517fdba-174e-4f15-8672-b5a9af370395 98ae986e4fd87ad603d438819ebb9ea6 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.DUP_224ab8cc.MethArray.Red.T C685110 GBM Methylation_Array tumor 7316UP-1640 205705520087_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 8ce88b9b-065b-43ee-a50c-f11f75e60388 0b8faab7f4750ae4c1a72977e764a413 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.DUP_224ab8cc.WGS.T C685110 GBM WGS tumor 7316UP-1640 7316UP-1640.WholeGenome.RP-2158.bam 52036892496 BAM submitted_aligned CPTAC3 bed75ef0-4e54-4a9d-99f5-ec221870fc82 7814414b25f3467cc474d853de8d0dc1 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.DUP_224ab8cc.WGS.T.hg38 C685110 GBM WGS tumor 7316UP-1640 9cd89b80-7f2d-4caf-9599-4457c80de4cd_wgs_gdc_realn.bam 151360159146 BAM harmonized CPTAC3 8f94f328-8cf9-41b8-b087-10e5793ddcb8 016db991aebfd5173231b3dc684d2f24 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.DUP_224ab8cc.WXS.T C685110 GBM WXS tumor 7316UP-1640 7316UP-1640.WholeExome.RP-1303.bam 31383164675 BAM submitted_aligned CPTAC3 e7d41a50-8623-40d3-8aed-23c140a7f820 bd7f3715c003c9664e481252d508b07d {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.DUP_224ab8cc.WXS.T.hg38 C685110 GBM WXS tumor 7316UP-1640 9cd89b80-7f2d-4caf-9599-4457c80de4cd_wxs_gdc_realn.bam 42219310210 BAM harmonized CPTAC3 0da7ee04-c471-488a-900b-44c538d9b274 1a94c4f20680bd7907feb9c01765ea65 {"aliquot_tag": "DUP_224ab8cc", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C685110.miRNA-Seq.R.hg38 C685110 GBM miRNA-Seq recurrent_tumor 7316UP-1883-1104817 f03d7cbf-e849-42ad-8f5d-67e3822191ee_mirnaseq_gdc_realn.bam 349281951 BAM harmonized CPTAC3 81402dca-0775-4e8c-85fb-24f045f8d530 3b1ec58d4e2852c7f84554316f6ab472 {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.miRNA-Seq.S44_L003_R1.T C685110 GBM miRNA-Seq tumor 7316UP-1640-1104801 210817_UNC31-K00269_0302_AHLCTHBBXY_AGTTCC_S44_L003_R1_001.unaln.bam 206155138 BAM S44_L003_R1 submitted_unaligned CPTAC3 dc4fd1b7-bf4d-43e5-89f2-478dde46ec37 b159dd6b7790632e3ff66ebdaa945528 {"aliquot_tag": "ALQ_97ba8140", "sample": "S44", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.miRNA-Seq.S5_L003_R1.R C685110 GBM miRNA-Seq recurrent_tumor 7316UP-1883-1104817 210817_UNC31-K00269_0302_AHLCTHBBXY_CACCGG_S5_L003_R1_001.unaln.bam 299614913 BAM S5_L003_R1 submitted_unaligned CPTAC3 d362451e-c2ab-4bef-8d40-dcb37e87c4d1 4908088df251ed4ae27ddcbfd7a86e96 {"aliquot_tag": "ALQ_1605e279", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.miRNA-Seq.T.hg38 C685110 GBM miRNA-Seq tumor 7316UP-1640-1104801 b0dcdc07-8305-4ab3-806d-f52eef38497c_mirnaseq_gdc_realn.bam 230886665 BAM harmonized CPTAC3 1dec6b08-d950-4aef-88a4-f953d384c9db e51517a4e110820c0e53ff04a26f7068 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.RNA-Seq.chimeric.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.chimeric.gdc_realn.bam 45307028 BAM chimeric harmonized CPTAC3 6a7c419e-1639-4ed4-8475-39b042237fb2 6909c0002f72e7e660766c0b787ee2c1 {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.RNA-Seq.chimeric.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.chimeric.gdc_realn.bam 116658331 BAM chimeric harmonized CPTAC3 8171d7d7-d344-4458-a039-2ced955f5f02 cd36e3bc7556ee4c24072bf861025ce1 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.RNA-Seq.genomic.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.genomic.gdc_realn.bam 9672838007 BAM genomic harmonized CPTAC3 14d4bd12-48b5-4981-8c3d-9119a9a216c7 38a4f91682a5ff9dbf1e4e1e73d2ba6d {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.RNA-Seq.genomic.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.genomic.gdc_realn.bam 8861269527 BAM genomic harmonized CPTAC3 2de6ee3b-51f5-4670-8a32-c6e5242c61ad 530cabd580efe772e1c59a44771ca566 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.RNA-Seq.S1_L001_R1.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R1_001.fastq.gz 4410505069 FASTQ S1_L001_R1 submitted_unaligned CPTAC3 519a2bd8-5dba-4d6a-9ca0-3cc6855d0045 84e0bc351d31f9b4993e48be4fa21ef9 {"aliquot_tag": "ALQ_97ba8140", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.RNA-Seq.S1_L001_R2.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R2_001.fastq.gz 4760327779 FASTQ S1_L001_R2 submitted_unaligned CPTAC3 131ac7f3-1651-4192-83cb-6f9a97cbc981 bb48a6309cb400fb8d671dfdc2012903 {"aliquot_tag": "ALQ_97ba8140", "sample": "S1", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.RNA-Seq.S25_L007_R1.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 3583102105 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 0ff23a92-6ade-4e6b-9867-2c64eb28c3de 0617ae40b2cca440a40a1fe8dc272127 {"aliquot_tag": "ALQ_1605e279", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.RNA-Seq.S25_L007_R2.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 3728372708 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 3652dfbb-4928-4636-9f9a-16069dc753ca c2b8a12c902c9d544c8f557f247faa15 {"aliquot_tag": "ALQ_1605e279", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.RNA-Seq.transcriptome.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.transcriptome.gdc_realn.bam 13118774964 BAM transcriptome harmonized CPTAC3 27472be8-b1e4-44e3-bbe4-9010d686d585 e1da09031fb04370c01ffc94a3cca09f {"aliquot_tag": "ALQ_1605e279", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C685110.RNA-Seq.transcriptome.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.transcriptome.gdc_realn.bam 20035746462 BAM transcriptome harmonized CPTAC3 2922cc31-d43a-42e3-9eb2-79fa8376db87 b2a87983ec8ce320ed558c23cd8a0b08 {"aliquot_tag": "ALQ_97ba8140", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.WGS.N C685110 GBM WGS blood_normal 7316UP-1640-1105277 7316UP-1640-1105277.WholeGenome.RP-2158.bam 46238585989 BAM submitted_aligned CPTAC3 fbea3bb4-541a-4972-ac52-526e12b87ed2 77edcf03df4527c3a8be2a3f11e49ea2 {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C685110.WGS.N.hg38 C685110 GBM WGS blood_normal 7316UP-1640-1105277 6ff375e3-b12b-4613-b2fa-92050083e4d4_wgs_gdc_realn.bam 137528306793 BAM harmonized CPTAC3 e25543a2-1b16-473c-880f-e6958968eaa9 1370a7932626ad488f113f966541c60f {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C685110.WGS.T C685110 GBM WGS tumor 7316UP-1640-1105266 7316UP-1640-1105266.WholeGenome.RP-2158.bam 52796552329 BAM submitted_aligned CPTAC3 b081720c-6818-4299-916b-e2895fa2bb0e 5b86bf9d2e253af28c91c58f920a8626 {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.WGS.T.hg38 C685110 GBM WGS tumor 7316UP-1640-1105266 1e2e1134-2810-4845-91cb-feed8c0cb7af_wgs_gdc_realn.bam 146654906111 BAM harmonized CPTAC3 fbd79a73-b732-40ef-a0f4-958216263a3c a7d12620ecb52452d39acba5eedf1187 {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.WXS.N C685110 GBM WXS blood_normal 7316UP-1640-1105277 7316UP-1640-1105277.WholeExome.RP-1303.bam 26076619092 BAM submitted_aligned CPTAC3 b5898748-110f-4c82-b9d6-1fcb24a9253c 2a9122df46791d6874c664830397fee6 {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C685110.WXS.N.hg38 C685110 GBM WXS blood_normal 7316UP-1640-1105277 6ff375e3-b12b-4613-b2fa-92050083e4d4_wxs_gdc_realn.bam 35274824769 BAM harmonized CPTAC3 5d4f21f6-d0a3-479d-a3fe-b84b1c27cfa4 d8cde9b75dacbca7b897eff91009ccc7 {"aliquot_tag": "ALQ_84b35001", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C685110.WXS.T C685110 GBM WXS tumor 7316UP-1640-1105266 7316UP-1640-1105266.WholeExome.RP-1303.bam 24916908755 BAM submitted_aligned CPTAC3 9d0a809c-159d-4108-bd85-d202c3174aa9 1d0e55a63658aba3ebbf261099d1cb60 {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C685110.WXS.T.hg38 C685110 GBM WXS tumor 7316UP-1640-1105266 1e2e1134-2810-4845-91cb-feed8c0cb7af_wxs_gdc_realn.bam 34019804973 BAM harmonized CPTAC3 533ec6cf-ac77-4d87-ad54-c8f34025c447 25588b15abcd9fb17d63e76733c6934b {"aliquot_tag": "ALQ_eaaf51d6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C760878.DUP_8e047fa6.MethArray.Green.R C760878 GBM Methylation_Array recurrent_tumor 7316UP-2726 205705520154_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35679230-1353-4e92-865c-2923a832f0ee 195673c04662146069558851d1c79c3e {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.DUP_8e047fa6.MethArray.Red.R C760878 GBM Methylation_Array recurrent_tumor 7316UP-2726 205705520154_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 81c07275-a44f-4484-a191-7b6f69aa2856 2c9d85d67aa6fbfc85f71935defd8c65 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.DUP_8e047fa6.WGS.R C760878 GBM WGS recurrent_tumor 7316UP-2726 7316UP-2726.WholeGenome.RP-2158.bam 51148367936 BAM submitted_aligned CPTAC3 86ad293f-7896-44da-b5ee-6136091f3ec1 a1f97f8051cd3de27ac0568c1889ea40 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.DUP_8e047fa6.WGS.R.hg38 C760878 GBM WGS recurrent_tumor 7316UP-2726 9952742f-5995-4aa6-8b29-737ef9b7e3b3_wgs_gdc_realn.bam 153565762186 BAM harmonized CPTAC3 040387a5-52ee-4943-a357-5cfce917bdc4 0ae3f193c0f43b8c3b95ee2545eb7e45 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.DUP_8e047fa6.WXS.R C760878 GBM WXS recurrent_tumor 7316UP-2726 7316UP-2726.WholeExome.RP-1303.bam 34826010175 BAM submitted_aligned CPTAC3 09bdc2a5-d466-4c7c-a812-a04762110d28 71f476c6099292d96fb9c2fe959bda31 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.DUP_8e047fa6.WXS.R.hg38 C760878 GBM WXS recurrent_tumor 7316UP-2726 9952742f-5995-4aa6-8b29-737ef9b7e3b3_wxs_gdc_realn.bam 47319708005 BAM harmonized CPTAC3 803642be-4348-4ebb-93d9-8b74d13f6bf2 59ec82faec890a31abd94f7f234b00f4 {"aliquot_tag": "DUP_8e047fa6", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C760878.DUP_b1ddc47c.MethArray.Green.T C760878 GBM Methylation_Array tumor 7316UP-1843 205705520083_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 4996fa9a-a666-4f7b-a843-9be2a298d8dd 82332fa3845df5188180e0ef3087552f {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.DUP_b1ddc47c.MethArray.Red.T C760878 GBM Methylation_Array tumor 7316UP-1843 205705520083_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 997ff62d-c2d5-4ce6-8aa1-7ed60e89724b a1702b5f70235508c5e7d911854b7d78 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.DUP_b1ddc47c.WGS.T C760878 GBM WGS tumor 7316UP-1843 7316UP-1843.WholeGenome.RP-2158.bam 52659142864 BAM submitted_aligned CPTAC3 3521f7d5-7f2f-49a4-a056-677cf68534cf 13eed2638a303910faba6a6124bedd92 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.DUP_b1ddc47c.WGS.T.hg38 C760878 GBM WGS tumor 7316UP-1843 9efda7a7-d54a-492b-9158-88f2644e909f_wgs_gdc_realn.bam 156692335603 BAM harmonized CPTAC3 76cfa23a-9aa9-41dd-945e-7806a9faa235 c420e8da770f1d5bb26651cbbdd26c44 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.DUP_b1ddc47c.WXS.T C760878 GBM WXS tumor 7316UP-1843 7316UP-1843.WholeExome.RP-1303.bam 27174083246 BAM submitted_aligned CPTAC3 ccb3f38a-9134-4fc4-8a72-71f766a29c9d 156582dd20a1d821292563bf63984d9f {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.DUP_b1ddc47c.WXS.T.hg38 C760878 GBM WXS tumor 7316UP-1843 9efda7a7-d54a-492b-9158-88f2644e909f_wxs_gdc_realn.bam 36863375757 BAM harmonized CPTAC3 dae070e2-2c6a-49ba-ae92-6f2319325e2a a6aaa3e042802eb411fef68ecd390913 {"aliquot_tag": "DUP_b1ddc47c", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C760878.miRNA-Seq.R.hg38 C760878 GBM miRNA-Seq recurrent_tumor 7316UP-2726-1104803 e49855a4-003c-4264-9715-435c165ac24a_mirnaseq_gdc_realn.bam 322496254 BAM harmonized CPTAC3 89d11119-3e93-4197-8d57-6e3547e7bb77 ad82887f5280c62bfcc88391f35911fc {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.miRNA-Seq.S41_L002_R1.T C760878 GBM miRNA-Seq tumor 7316UP-1843-1104791 210817_UNC31-K00269_0302_AHLCTHBBXY_TGACCA_S41_L002_R1_001.unaln.bam 169727575 BAM S41_L002_R1 submitted_unaligned CPTAC3 90bc24a4-cc91-42cf-9b26-4efacc9fac14 38b53d8a54763bd5af39b8fc092f4483 {"aliquot_tag": "ALQ_26df6af7", "sample": "S41", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.miRNA-Seq.S46_L003_R1.R C760878 GBM miRNA-Seq recurrent_tumor 7316UP-2726-1104803 210817_UNC31-K00269_0302_AHLCTHBBXY_CCGTCC_S46_L003_R1_001.unaln.bam 279335716 BAM S46_L003_R1 submitted_unaligned CPTAC3 ba3e5fc9-e21d-4a7f-8dd8-ea9f4c476948 23fcadd519ecce30ed2a049b7bf24f89 {"aliquot_tag": "ALQ_b1a0e491", "sample": "S46", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.miRNA-Seq.T.hg38 C760878 GBM miRNA-Seq tumor 7316UP-1843-1104791 b863722f-46c4-4aa5-a36f-c052b7c9822a_mirnaseq_gdc_realn.bam 193027906 BAM harmonized CPTAC3 1fb72deb-c4b8-4713-abdf-e8c2512da083 9e37bb0868d39278a328210c250b22a5 {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.RNA-Seq.chimeric.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.chimeric.gdc_realn.bam 111407017 BAM chimeric harmonized CPTAC3 8b6d8957-5d0c-4c14-a23e-5f525ec51563 0f78dba424a5a2c931402f128e04b265 {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.RNA-Seq.chimeric.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.chimeric.gdc_realn.bam 157411492 BAM chimeric harmonized CPTAC3 a643cc1e-9e00-4060-a13c-98d361d982da 84c2e42eb7ec4ad487c29ed219f098ce {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.RNA-Seq.genomic.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.genomic.gdc_realn.bam 7958016593 BAM genomic harmonized CPTAC3 28620a9c-d98c-49c7-86e3-c1219b7851ba 2d1d3e8168bd0875ad959a815521a684 {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.RNA-Seq.genomic.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.genomic.gdc_realn.bam 7122744863 BAM genomic harmonized CPTAC3 7a62d98d-5e1a-4bc5-81df-3e4ab96ca6e6 4449cc45acf2469538173fe8250ed877 {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.RNA-Seq.S22_L006_R1.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3626934770 FASTQ S22_L006_R1 submitted_unaligned CPTAC3 c47b1200-7652-4875-9681-8bdcd0de7ac0 b4060c099fd3e7d50b945e2d3892b080 {"aliquot_tag": "ALQ_b1a0e491", "sample": "S22", "lane": "L006", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.RNA-Seq.S22_L006_R2.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 3977519333 FASTQ S22_L006_R2 submitted_unaligned CPTAC3 b8645040-f99b-4031-88bb-231e179d10f0 98e22a784083a347faf55086f7ec6455 {"aliquot_tag": "ALQ_b1a0e491", "sample": "S22", "lane": "L006", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.RNA-Seq.S6_L002_R1.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3428466031 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 86b299c6-96ce-4d99-b32b-76a4bcd9ee4c f6b0d9add39f2e7b0c9e526595f213ee {"aliquot_tag": "ALQ_26df6af7", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.RNA-Seq.S6_L002_R2.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3707998190 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 51ca63ce-fa0b-4327-b258-dc34abd61afc c48910bc1037cfc3a36fb2eb3bb1dd7e {"aliquot_tag": "ALQ_26df6af7", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.RNA-Seq.transcriptome.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.transcriptome.gdc_realn.bam 11373368602 BAM transcriptome harmonized CPTAC3 10efdc1b-8d45-42d1-95c0-01a7fcbf57aa 3b0b8854f28f9377ae002afb129be1ef {"aliquot_tag": "ALQ_b1a0e491", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.RNA-Seq.transcriptome.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.transcriptome.gdc_realn.bam 14763470994 BAM transcriptome harmonized CPTAC3 c1fdcf21-75e0-412b-8f47-f4f9e01d4aa2 72f89b1128c1fba16068848d84597223 {"aliquot_tag": "ALQ_26df6af7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.WGS.R C760878 GBM WGS recurrent_tumor 7316UP-2726-1105268 7316UP-2726-1105268.WholeGenome.RP-2158.bam 43181516048 BAM submitted_aligned CPTAC3 e87422a4-53c4-4a78-b552-e769f2560d10 952a50dc22c514c8d1324c81ad2ff0e3 {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.WGS.R.hg38 C760878 GBM WGS recurrent_tumor 7316UP-2726-1105268 109d765d-2923-47ce-b9bc-cce594d1512c_wgs_gdc_realn.bam 126333949057 BAM harmonized CPTAC3 a01eb922-248a-40e9-9fe1-731c18c8cd9a 98abe63ee266261f6e627dd12adeafe2 {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.WGS.T C760878 GBM WGS tumor 7316UP-1843-1105254 7316UP-1843-1105254.WholeGenome.RP-2158.bam 64521345577 BAM submitted_aligned CPTAC3 1450f6a2-0de0-4974-81fd-c7d489cee875 6291e068006afcd5a6b4637dc958717a {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.WGS.T.hg38 C760878 GBM WGS tumor 7316UP-1843-1105254 ad3ce926-8ffc-46c4-87c9-64fba596ac12_wgs_gdc_realn.bam 181254456613 BAM harmonized CPTAC3 f90f44ce-8e3a-4a48-9595-0f118b7d2136 d70103eba72415ed913d2864a7dd026b {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.WXS.N C760878 GBM WXS blood_normal 7316UP-1843-1105278 7316UP-1843-1105278.WholeExome.RP-1303.bam 25612276094 BAM submitted_aligned CPTAC3 4254f062-9dc7-489e-816a-23711fe63892 3cb3084c36f9c4044fcbcd4758015b57 {"aliquot_tag": "ALQ_7ff75a53", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C760878.WXS.N.hg38 C760878 GBM WXS blood_normal 7316UP-1843-1105278 0d3f7051-f710-4f75-801e-a163b2a7c958_wxs_gdc_realn.bam 34942652944 BAM harmonized CPTAC3 26a2fe79-198a-45a6-9329-ac32ed951da4 b63f9e35509de826d11dae0fd4b0f5c6 {"aliquot_tag": "ALQ_7ff75a53", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C760878.WXS.R C760878 GBM WXS recurrent_tumor 7316UP-2726-1105268 7316UP-2726-1105268.WholeExome.RP-1303.bam 36649596530 BAM submitted_aligned CPTAC3 4d2157f1-28d9-4e05-8f9d-a4424b09c858 8f124c78ab2e85e2f8312c3d32f3762b {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C760878.WXS.R.hg38 C760878 GBM WXS recurrent_tumor 7316UP-2726-1105268 109d765d-2923-47ce-b9bc-cce594d1512c_wxs_gdc_realn.bam 50407336546 BAM harmonized CPTAC3 6c4e1c9b-a2e2-4502-8e26-82b89fad92ae 61d385dfed7a1efec00331d0403e1dfd {"aliquot_tag": "ALQ_c503782c", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C760878.WXS.T C760878 GBM WXS tumor 7316UP-1843-1105254 7316UP-1843-1105254.WholeExome.RP-1303.bam 24231661236 BAM submitted_aligned CPTAC3 ae2999a1-41b5-4226-b4c7-47045e937235 5a40c541dfe91688a386b9c6050dd688 {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C760878.WXS.T.hg38 C760878 GBM WXS tumor 7316UP-1843-1105254 ad3ce926-8ffc-46c4-87c9-64fba596ac12_wxs_gdc_realn.bam 34062192234 BAM harmonized CPTAC3 5495a6ee-951b-4613-b9d3-3344fe76a916 9850ea6c26bdb95ab720a8ed7d6898e2 {"aliquot_tag": "ALQ_447774fa", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C761370.DUP_260f1df4.MethArray.Green.T C761370 GBM Methylation_Array tumor 7316UP-1848 205854150177_R07C01_Grn.idat 13677893 IDAT Green NA CPTAC3 79ce9446-5aad-4f6e-800c-870d5c7c856d 6e9b8ee86d408604c6a278d111065a6c {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.DUP_260f1df4.MethArray.Red.T C761370 GBM Methylation_Array tumor 7316UP-1848 205854150177_R07C01_Red.idat 13677893 IDAT Red NA CPTAC3 b80ed94e-d5cb-43c0-9a9a-f697c73912d8 dcba89c93fbc81b5cc8ee006f88a7880 {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.DUP_260f1df4.WGS.T C761370 GBM WGS tumor 7316UP-1848 7316UP-1848.WholeGenome.RP-2158.bam 51644080684 BAM submitted_aligned CPTAC3 3ff9d2fc-c389-4747-8648-f030c20b2c18 412c1506cb1068fc73b87256ba3d05e4 {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.DUP_260f1df4.WGS.T.hg38 C761370 GBM WGS tumor 7316UP-1848 59ba09c2-abf4-46dd-b566-c703d8da80e5_wgs_gdc_realn.bam 153860990638 BAM harmonized CPTAC3 f5979a9a-e1e5-4b1e-8a6d-971a8619cdb2 ce9ca6d3af470190eb668840c3e77d89 {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.DUP_260f1df4.WXS.T C761370 GBM WXS tumor 7316UP-1848 7316UP-1848.WholeExome.RP-1303.bam 31981438733 BAM submitted_aligned CPTAC3 6dce99c6-b5a5-4ee0-8ee6-1e02ebf260a2 6c5be4d787070125a99a4f6e292b78bd {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.DUP_260f1df4.WXS.T.hg38 C761370 GBM WXS tumor 7316UP-1848 59ba09c2-abf4-46dd-b566-c703d8da80e5_wxs_gdc_realn.bam 44821987147 BAM harmonized CPTAC3 fd66e1f9-ce3b-4a76-9e48-23bf78568f41 a94ee7e68570950dc20cb0048c899e3e {"aliquot_tag": "DUP_260f1df4", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C761370.DUP_4b43218c.MethArray.Green.R C761370 GBM Methylation_Array recurrent_tumor 7316UP-2310 205854150169_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ff58beb8-e646-41a6-a815-0b18fb8a2519 5359f544f75f1d27c9ac8d6216c5abcd {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_4b43218c.MethArray.Red.R C761370 GBM Methylation_Array recurrent_tumor 7316UP-2310 205854150169_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 6a560bdc-9c45-48d1-aeba-0eeb3791ebb9 45c50335b876517e3110b2bf981e5554 {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_4b43218c.WGS.R C761370 GBM WGS recurrent_tumor 7316UP-2310 7316UP-2310.WholeGenome.RP-2158.bam 47338708829 BAM submitted_aligned CPTAC3 953902f7-b5d0-4995-b32c-744a5d69fd57 f1596834fd222bd076253d02243d81bb {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_4b43218c.WGS.R.hg38 C761370 GBM WGS recurrent_tumor 7316UP-2310 5ac7956a-d521-4b91-9211-8b98765fa4b0_wgs_gdc_realn.bam 139056330460 BAM harmonized CPTAC3 35de409f-b939-48b7-a446-1f71686bd915 b166f1579ba45d00ff5fc46aef8c77ce {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_4b43218c.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310 7316UP-2310.WholeExome.RP-1303.bam 47745759188 BAM submitted_aligned CPTAC3 7f3a3a5d-557b-4af6-aed2-7e7b2c9ddfed 98949ae96661939248fd4c79723bf6d6 {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_4b43218c.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310 5ac7956a-d521-4b91-9211-8b98765fa4b0_wxs_gdc_realn.bam 65618004180 BAM harmonized CPTAC3 59bd5a44-f128-4533-b8ee-41b318cebae9 7cc2edd115a612685126fede965b217b {"aliquot_tag": "DUP_4b43218c", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C761370.DUP_d11a2397.WGS.R C761370 GBM WGS recurrent_tumor 7316UP-2310-1105240 7316UP-2310-1105240.WholeGenome.RP-2158.bam 50186159916 BAM submitted_aligned CPTAC3 541eba21-ad2a-4c21-ba54-688ccbd3ae91 a2248078c0926f5e5c00cb4e544f3f74 {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_d11a2397.WGS.R.hg38 C761370 GBM WGS recurrent_tumor 7316UP-2310-1105240 f90fe2dd-2e89-4710-b776-511427fa2a84_wgs_gdc_realn.bam 152510216231 BAM harmonized CPTAC3 7b3c75af-189f-4135-a095-4c8d7b85b34f bf4223e5267bb399b3a7b400cf3a803a {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_d11a2397.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310-1105240 7316UP-2310-1105240.WholeExome.RP-1303.bam 24522804264 BAM submitted_aligned CPTAC3 2f90a34c-c645-448d-a51b-b45d398c728a 3450f62644b64e0faf890f9c6101da2f {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.DUP_d11a2397.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310-1105240 f90fe2dd-2e89-4710-b776-511427fa2a84_wxs_gdc_realn.bam 33109931762 BAM harmonized CPTAC3 6b5e7c63-dd7e-474b-bb0b-1ac39be42e15 7256e2b172dc9abb2e6bf464a3cf81d8 {"aliquot_tag": "DUP_d11a2397", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C761370.miRNA-Seq.R.hg38 C761370 GBM miRNA-Seq recurrent_tumor 7316UP-2310-1104757 b133437a-b37d-429b-97c6-0c4af7d9b477_mirnaseq_gdc_realn.bam 317162321 BAM harmonized CPTAC3 e92f2767-6478-436b-99db-188911216cfc 21ea679eacd2b09ce52d90ef8d20447d {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.miRNA-Seq.S18_L001_R1.R C761370 GBM miRNA-Seq recurrent_tumor 7316UP-2310-1104757 210817_UNC31-K00269_0302_AHLCTHBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 277481764 BAM S18_L001_R1 submitted_unaligned CPTAC3 d0acb96c-704f-4db7-b5df-116d52c68891 0bf880c98874ff6c5f8264ccbd6ec313 {"aliquot_tag": "ALQ_e81222fb", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.miRNA-Seq.S27_L002_R1.T C761370 GBM miRNA-Seq tumor 7316UP-1848-1104789 210817_UNC31-K00269_0302_AHLCTHBBXY_CGATGT_S27_L002_R1_001.unaln.bam 90036960 BAM S27_L002_R1 submitted_unaligned CPTAC3 45a78742-a2e6-4c38-bb44-be65912f364c d63f00e1f669d2a6b3bb636b52ca1c44 {"aliquot_tag": "ALQ_b34a4d59", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.miRNA-Seq.T.hg38 C761370 GBM miRNA-Seq tumor 7316UP-1848-1104789 fd0a2cb3-a195-4905-b5b5-ec1be9a356a7_mirnaseq_gdc_realn.bam 106309257 BAM harmonized CPTAC3 69589c0f-8265-4baf-b8ac-22282d21cda2 9ba3f193adf8025f7a072028faaeef82 {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.RNA-Seq.chimeric.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.chimeric.gdc_realn.bam 79588049 BAM chimeric harmonized CPTAC3 af913e01-10a5-4b7f-943a-b16ff81cbd2d 5ddc882ef783108d47cb6cc26366b34e {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.RNA-Seq.chimeric.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.chimeric.gdc_realn.bam 46178356 BAM chimeric harmonized CPTAC3 a2f556c0-75e5-47d1-b992-3e3dcbe4ce60 f832495810a9ffa921cd908c3ab6e9de {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.RNA-Seq.genomic.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.genomic.gdc_realn.bam 9445323463 BAM genomic harmonized CPTAC3 6dcdcbe6-7208-4d07-b5c1-ef5fa8dda187 54a854be1c871fc2a2d2b8db3a0c9c6c {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.RNA-Seq.genomic.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.genomic.gdc_realn.bam 9319554993 BAM genomic harmonized CPTAC3 151c4db5-7e2f-449f-b91d-1086a6ace6a5 270e958a0a4fff398b2c2c24180aaf6a {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.RNA-Seq.S14_L004_R1.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R1_001.fastq.gz 3749935230 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 5888865b-8b1c-409f-849d-a969b1c7d9f1 ab0f425080e0a1aba0f09caabed29e1c {"aliquot_tag": "ALQ_e81222fb", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.RNA-Seq.S14_L004_R2.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R2_001.fastq.gz 4064864677 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 31f61c3a-670a-4635-b769-0a5f9dd7d8f2 f2c7ffd07e321d8cf6672c240e01938e {"aliquot_tag": "ALQ_e81222fb", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.RNA-Seq.S5_L002_R1.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R1_001.fastq.gz 3676602157 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 dca91fcb-3f8f-44de-965d-65e921a02fd5 6e0e66b1e873676662e18e10ca06e71e {"aliquot_tag": "ALQ_b34a4d59", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.RNA-Seq.S5_L002_R2.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R2_001.fastq.gz 4065964829 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 f0d9622c-b439-4941-94bb-29baf4448bed 54876ba181e25a5bd27b37a8b70b60b5 {"aliquot_tag": "ALQ_b34a4d59", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.RNA-Seq.transcriptome.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.transcriptome.gdc_realn.bam 13559423868 BAM transcriptome harmonized CPTAC3 a39c3e40-b755-4233-9e4e-bb9b3728e6c6 8ec20e16a45144fd6a277ee1c6a5878a {"aliquot_tag": "ALQ_e81222fb", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.RNA-Seq.transcriptome.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.transcriptome.gdc_realn.bam 12614732431 BAM transcriptome harmonized CPTAC3 e8abab16-c4a5-4d7a-9c03-4b05fa76ddac f81880dc354e7a4253504eaa0dfe64c8 {"aliquot_tag": "ALQ_b34a4d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.WGS.N C761370 GBM WGS blood_normal 7316UP-1848-1105210 7316UP-1848-1105210.WholeGenome.RP-2158.bam 59941947727 BAM submitted_aligned CPTAC3 7d7f64b0-e6ca-4440-b1cb-408cc666bf7f c104956c161dc565fd1a656736d3b956 {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C761370.WGS.N.hg38 C761370 GBM WGS blood_normal 7316UP-1848-1105210 bb429402-6251-49ac-a5e1-ec64c0707765_wgs_gdc_realn.bam 180943302646 BAM harmonized CPTAC3 8d798315-d251-4b30-9ae8-46eef4166aaf 1e703bbbabe17a4029592c1015dd76a4 {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C761370.WGS.T C761370 GBM WGS tumor 7316UP-1848-1105252 7316UP-1848-1105252.WholeGenome.RP-2158.bam 52242174534 BAM submitted_aligned CPTAC3 b7a46c7c-1369-4b72-b781-d5b05e0c5d67 a1d299f96de11b27c06ca49d4ec7d30b {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.WGS.T.hg38 C761370 GBM WGS tumor 7316UP-1848-1105252 94dc4f39-5f41-450e-bc88-b5efb574ab4b_wgs_gdc_realn.bam 155112892361 BAM harmonized CPTAC3 f6231081-86d3-4b91-9b78-69de532a74ef 5463218bb3d0c95d2e7ff92e4ce38405 {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.WXS.N C761370 GBM WXS blood_normal 7316UP-1848-1105210 7316UP-1848-1105210.WholeExome.RP-1303.bam 25632609658 BAM submitted_aligned CPTAC3 8c32252a-765b-4a13-9be9-59adf0e39899 e88ecda84eb4c45dd039ce33c101a0ae {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C761370.WXS.N.hg38 C761370 GBM WXS blood_normal 7316UP-1848-1105210 bb429402-6251-49ac-a5e1-ec64c0707765_wxs_gdc_realn.bam 35051751247 BAM harmonized CPTAC3 a3f91b31-1981-4536-bea9-8789c28a0305 5bf375786759bbd98bb80bce2fe7d6b9 {"aliquot_tag": "ALQ_a523eb3a", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C761370.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310-1105220 7316UP-2310-1105220.WholeExome.RP-1303.bam 22328978006 BAM submitted_aligned CPTAC3 f382759e-25f0-4a31-8f29-81ad8af13155 da7740d4ac4f7d4cd6f9188c4473522a {"aliquot_tag": "ALQ_87408411", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C761370.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310-1105220 b14b1e47-08b6-42b7-bd19-383cbdd4d943_wxs_gdc_realn.bam 30196177408 BAM harmonized CPTAC3 37c7127f-01a5-43e3-8c85-dd62630aaf80 ec73e1342597494a8a0fed23adb516a3 {"aliquot_tag": "ALQ_87408411", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C761370.WXS.T C761370 GBM WXS tumor 7316UP-1848-1105252 7316UP-1848-1105252.WholeExome.RP-1303.bam 25751689208 BAM submitted_aligned CPTAC3 910901e4-d63f-41b2-b866-a602bc9a17d5 fa4331a6ad767ad0960dd52536ca5c71 {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C761370.WXS.T.hg38 C761370 GBM WXS tumor 7316UP-1848-1105252 94dc4f39-5f41-450e-bc88-b5efb574ab4b_wxs_gdc_realn.bam 34824648092 BAM harmonized CPTAC3 8541768d-a439-4abf-987e-d08039a4ec1d fc07bdda5aeda5dd9c8d189601c84f86 {"aliquot_tag": "ALQ_2f414f12", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C827913.DUP_97c68cdd.miRNA-Seq.R.hg38 C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2527-1104816 a0414d6e-dfae-41ef-af95-8ada454e42bc_mirnaseq_gdc_realn.bam 201335189 BAM harmonized CPTAC3 39926bff-5c62-490b-9a58-cae66e2f2fce 2ed59e9f3af50280cf7c07fa586c9439 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_97c68cdd.miRNA-Seq.S4_L003_R1.R C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2527-1104816 210817_UNC31-K00269_0302_AHLCTHBBXY_CAACTA_S4_L003_R1_001.unaln.bam 177299449 BAM S4_L003_R1 submitted_unaligned CPTAC3 4809d41d-5cde-4587-b4c2-9cb160f50336 c88e1d18a82236a93e8d230203365288 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_97c68cdd.RNA-Seq.chimeric.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.chimeric.gdc_realn.bam 80665175 BAM chimeric harmonized CPTAC3 3bcb2523-bd25-4dee-bf24-9eb1d57a6626 ca028e3e9bf431e279ecf3a35706be5f {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_97c68cdd.RNA-Seq.genomic.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.genomic.gdc_realn.bam 10532417541 BAM genomic harmonized CPTAC3 bd9ede12-b516-4d3a-abec-5c7781905508 a0bf21c1af1f611171485026d194c8cb {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_97c68cdd.RNA-Seq.S8_L002_R1.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R1_001.fastq.gz 4131847766 FASTQ S8_L002_R1 submitted_unaligned CPTAC3 7d9d1934-c881-4f7f-868e-7ff2720591ce ce1a6ef739ee98aa460df864d4b29cc3 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S8", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_97c68cdd.RNA-Seq.S8_L002_R2.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R2_001.fastq.gz 4505545231 FASTQ S8_L002_R2 submitted_unaligned CPTAC3 81cfe120-ec7e-48d7-8468-c407c8fef01e 7dcd43d256201d30395355847bb0affe {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "sample": "S8", "lane": "L002", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_97c68cdd.RNA-Seq.transcriptome.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.transcriptome.gdc_realn.bam 13825377767 BAM transcriptome harmonized CPTAC3 a343ed39-7d5d-43f7-a056-b4308ef98195 fd3f146a1cd82080689ce362a44ccc29 {"aliquot_tag": "DUP_97c68cdd", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_cd3f587f.WGS.R C827913 GBM WGS recurrent_tumor 7316UP-2333-1105221 7316UP-2333-1105221.WholeGenome.RP-2158.bam 50801966508 BAM submitted_aligned CPTAC3 49589c76-14e2-4739-a8ae-697ffa6e766d d76147ab25723eacbf809e74fe7626ce {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_cd3f587f.WGS.R.hg38 C827913 GBM WGS recurrent_tumor 7316UP-2333-1105221 90f0199a-aa4c-4d48-8997-f1c9eae013ef_wgs_gdc_realn.bam 146875053843 BAM harmonized CPTAC3 34fb7b33-5986-4a1c-bb81-d599e1689a6a 427f719e6ca33c72708882d39aa2e41b {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_cd3f587f.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2333-1105221 7316UP-2333-1105221.WholeExome.RP-1303.bam 25737528247 BAM submitted_aligned CPTAC3 e2e74c07-30bd-46c6-8342-53602855857b 1802d1a1cea35c6220e56e6521f5df6b {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_cd3f587f.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2333-1105221 90f0199a-aa4c-4d48-8997-f1c9eae013ef_wxs_gdc_realn.bam 35071520204 BAM harmonized CPTAC3 f4a1b799-9800-4149-b46e-8a07674ea891 2096675d9019402f616d0bbb7d848eab {"aliquot_tag": "DUP_cd3f587f", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C827913.DUP_fa879b5e.MethArray.Green.R C827913 GBM Methylation_Array recurrent_tumor 7316UP-2527 205705520162_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 2202b70f-e796-4046-908c-1ae86bc0fb59 e62e38f42b78fa26957401ae6f0649ce {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_fa879b5e.MethArray.Red.R C827913 GBM Methylation_Array recurrent_tumor 7316UP-2527 205705520162_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 22a9dc44-12b0-4423-a48c-a6ecad43c9a8 ea36ad1427e8d2875ffa17c638a0f82c {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_fa879b5e.WGS.R C827913 GBM WGS recurrent_tumor 7316UP-2527 7316UP-2527.WholeGenome.RP-2158.bam 52154368925 BAM submitted_aligned CPTAC3 de2c3484-c0cb-4e24-942a-23f0a8eb2ed3 e875aee1e02d798e798d3f890ee3383f {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_fa879b5e.WGS.R.hg38 C827913 GBM WGS recurrent_tumor 7316UP-2527 67934a81-f8c6-4acd-a3b3-40049799a709_wgs_gdc_realn.bam 156529037966 BAM harmonized CPTAC3 defb223c-cd77-4d8c-baec-bae879fc10b8 82e2b5dea032f57305cc7eb0305783a8 {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_fa879b5e.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2527 7316UP-2527.WholeExome.RP-1303.bam 26171566550 BAM submitted_aligned CPTAC3 06e0be11-40ec-4fd8-a9c5-bb169e9f21b1 e10f6c5d6d3772135983786d4459e1b5 {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.DUP_fa879b5e.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2527 67934a81-f8c6-4acd-a3b3-40049799a709_wxs_gdc_realn.bam 35289714577 BAM harmonized CPTAC3 cc70d409-ca55-4291-86ea-42a6392b7a38 701e3f2d79ce78dc71eee3c363d56e9d {"aliquot_tag": "DUP_fa879b5e", "aliquot_annotation": "Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C827913.MethArray.Green.T C827913 GBM Methylation_Array tumor 7316UP-2058 205854150177_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 4576ef53-7a29-474c-b907-952e6af9d66e a5efa335b556449c9b57b4a0865f9f09 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C827913.MethArray.Red.T C827913 GBM Methylation_Array tumor 7316UP-2058 205854150177_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 20855ccc-7abe-48f3-bb76-223aa6dfc3cb 5fe1002571cb0ba8fbb4fe3a41f15d07 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C827913.miRNA-Seq.R.hg38 C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2333-1104758 906f97f4-bb26-4ae1-b1f0-9f56545b18b7_mirnaseq_gdc_realn.bam 256262620 BAM harmonized CPTAC3 2deaa3d3-59c6-4c0e-be74-87d39b9c7daa 773f581c1df4d7be0ec21ca6ccd58b10 {"aliquot_tag": "ALQ_45d5d392", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.miRNA-Seq.S19_L001_R1.R C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2333-1104758 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 230796185 BAM S19_L001_R1 submitted_unaligned CPTAC3 b0c18c39-a865-464f-92bb-9182e0dd93bf bac1108e0a0f5b959487f7bfca1bd088 {"aliquot_tag": "ALQ_45d5d392", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.WGS.N C827913 GBM WGS blood_normal 7316UP-2058-1105217 7316UP-2058-1105217.WholeGenome.RP-2158.bam 66390255486 BAM submitted_aligned CPTAC3 b77d8996-e5d1-4181-8115-bdb50a062ab5 c5760db656ccec3d5d74cfeee2f86ede {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C827913.WGS.N.hg38 C827913 GBM WGS blood_normal 7316UP-2058-1105217 d9f92625-c0ca-4040-bdda-9dfdbb0d898c_wgs_gdc_realn.bam 185504306702 BAM harmonized CPTAC3 f261a842-13a0-46c7-a457-6044eb7312a9 3735c87f2f1565ad2fb1121008842e3d {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C827913.WGS.T C827913 GBM WGS tumor 7316UP-2058 7316UP-2058.WholeGenome.RP-2158.bam 57079724828 BAM submitted_aligned CPTAC3 64c68951-6295-4e75-8222-6a09e134fab5 c8721c32734a6f9227bc0e4e28eb42c2 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C827913.WGS.T.hg38 C827913 GBM WGS tumor 7316UP-2058 04ca4248-176f-4eda-89af-30230af7817d_wgs_gdc_realn.bam 169228846020 BAM harmonized CPTAC3 7fa9454f-837a-4544-a1d8-091244567425 2c937d120be7056541f59b44c5c73f31 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C827913.WXS.N C827913 GBM WXS blood_normal 7316UP-2058-1105217 7316UP-2058-1105217.WholeExome.RP-1303.bam 27986255546 BAM submitted_aligned CPTAC3 f7344d7a-80b3-4e8c-8244-471c07ad98e8 8bd4d5c5bf0a6fa84b49156ce2b68e04 {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C827913.WXS.N.hg38 C827913 GBM WXS blood_normal 7316UP-2058-1105217 d9f92625-c0ca-4040-bdda-9dfdbb0d898c_wxs_gdc_realn.bam 38198004026 BAM harmonized CPTAC3 2dd56dbe-e71c-40cd-8c48-c799ef53aa66 50b9bba59f2900472573d46f720908e0 {"aliquot_tag": "ALQ_19d82612", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C827913.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2527-1105195 7316UP-2527-1105195.WholeExome.RP-1303.bam 24327000092 BAM submitted_aligned CPTAC3 53703239-f5a5-411e-a5ce-e239614380ce 57fb3d0d8e8383f562a5d722be746910 {"aliquot_tag": "ALQ_717b0b85", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C827913.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2527-1105195 8454ea62-6eaf-4365-9615-865f92181d00_wxs_gdc_realn.bam 32879863913 BAM harmonized CPTAC3 5b5e4d0b-4639-4fc2-8fdc-4c72efdd3b52 6a5aebddb43c876b93ff42d8ddf30732 {"aliquot_tag": "ALQ_717b0b85", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C827913.WXS.T C827913 GBM WXS tumor 7316UP-2058 7316UP-2058.WholeExome.RP-1303.bam 23498711738 BAM submitted_aligned CPTAC3 25e176fc-33df-4190-85fd-515ccfde7a96 2dcda56718006e351e610e43408386f0 {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C827913.WXS.T.hg38 C827913 GBM WXS tumor 7316UP-2058 04ca4248-176f-4eda-89af-30230af7817d_wxs_gdc_realn.bam 31571237792 BAM harmonized CPTAC3 295d757c-a37e-49f5-9d26-65dff2dbbf13 c13745f2971101900b58802e5e91278b {"aliquot_tag": "ALQ_23b2d2e3", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C846363.DUP_51dcc4a3.MethArray.Green.T C846363 GBM Methylation_Array tumor 7316UP-2100 205555380097_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35b93fcc-0db4-42fe-ae51-9b32bc6ae301 e36cedc96fdb37c5c6e0e73f95fe7c26 {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.DUP_51dcc4a3.MethArray.Red.T C846363 GBM Methylation_Array tumor 7316UP-2100 205555380097_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 cadfb4ac-bc7a-4031-a17f-5c472255c296 3192c6758d68302e6c24de278757d65e {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.DUP_51dcc4a3.WGS.T C846363 GBM WGS tumor 7316UP-2100 7316UP-2100.WholeGenome.RP-2158.bam 52394539987 BAM submitted_aligned CPTAC3 a94539e9-b4fb-4d53-b3a5-9bbede2615ff b1fd2ab0b4b6f62482e46532b56ca23f {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.DUP_51dcc4a3.WGS.T.hg38 C846363 GBM WGS tumor 7316UP-2100 9dd34d93-e75b-4bc5-b49a-b095ba8daf3e_wgs_gdc_realn.bam 156855734828 BAM harmonized CPTAC3 f5321ae8-799c-4684-9c96-c41090f687d0 d5d75a4b88b098a6468ab0d6a402b5f0 {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.DUP_51dcc4a3.WXS.T C846363 GBM WXS tumor 7316UP-2100 7316UP-2100.WholeExome.RP-1303.bam 35056319324 BAM submitted_aligned CPTAC3 12336b79-920e-441d-b2cb-de3f75f31fdd 1e7f2f490f374c9e9693c1ea22ce3d1c {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.DUP_51dcc4a3.WXS.T.hg38 C846363 GBM WXS tumor 7316UP-2100 9dd34d93-e75b-4bc5-b49a-b095ba8daf3e_wxs_gdc_realn.bam 47361689745 BAM harmonized CPTAC3 83a989e8-836e-42b2-a240-f87f0858d189 aba7b19465de752e29e3ac56cf490885 {"aliquot_tag": "DUP_51dcc4a3", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C846363.DUP_a3686b92.MethArray.Green.R C846363 GBM Methylation_Array recurrent_tumor 7316UP-2843 205828590002_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 92f2414a-b6c1-41fe-874d-1ac6b51d3438 837f6503ca67b082eea484065e5615fa {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.DUP_a3686b92.MethArray.Red.R C846363 GBM Methylation_Array recurrent_tumor 7316UP-2843 205828590002_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 ed169a03-fe11-4a60-ad81-dc345c430957 5318857f34c3a46b97a06677a86994a6 {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.DUP_a3686b92.WGS.R C846363 GBM WGS recurrent_tumor 7316UP-2843 7316UP-2843.WholeGenome.RP-2158.bam 50765217165 BAM submitted_aligned CPTAC3 e7fc300f-d2ee-4eea-ab56-ddfb38150ba5 6c8994fe35d097a49c2a58ee2f9721ba {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.DUP_a3686b92.WGS.R.hg38 C846363 GBM WGS recurrent_tumor 7316UP-2843 d879e30f-9892-4e5e-aafb-30cfe792f307_wgs_gdc_realn.bam 152173646997 BAM harmonized CPTAC3 27d4f02b-2288-42fb-98fb-020481d1a25f 993440c2ab0109581dcfe0c2653d80bc {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.DUP_a3686b92.WXS.R C846363 GBM WXS recurrent_tumor 7316UP-2843 7316UP-2843.WholeExome.RP-1303.bam 33943432437 BAM submitted_aligned CPTAC3 31af42c6-e11c-49c5-ab77-dd8dd863bdcc 4b7a30c10f231ec886e6de47edd91a3a {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.DUP_a3686b92.WXS.R.hg38 C846363 GBM WXS recurrent_tumor 7316UP-2843 d879e30f-9892-4e5e-aafb-30cfe792f307_wxs_gdc_realn.bam 46267651279 BAM harmonized CPTAC3 6fa6f528-cbe2-436f-8ae6-0e2c6fda665e 47b0f765b9f5a022864a1e51e0d86690 {"aliquot_tag": "DUP_a3686b92", "aliquot_annotation": "Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C846363.miRNA-Seq.R.hg38 C846363 GBM miRNA-Seq recurrent_tumor 7316UP-2843-1104781 6b9a74ef-7985-4b9c-b9ef-b9c04336797a_mirnaseq_gdc_realn.bam 363780993 BAM harmonized CPTAC3 f8bc6740-78b9-454f-bf61-36bb005d2b4f 247d15d262568def382dab4672c56014 {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.miRNA-Seq.S10_L002_R1.R C846363 GBM miRNA-Seq recurrent_tumor 7316UP-2843-1104781 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L002_R1_001.unaln.bam 324967490 BAM S10_L002_R1 submitted_unaligned CPTAC3 26a84bda-5a37-4951-8a78-f77b7babb8da cb2ba09a4a8a243c4c12568701bb4d29 {"aliquot_tag": "ALQ_485a8946", "sample": "S10", "lane": "L002", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.miRNA-Seq.S17_L001_R1.T C846363 GBM miRNA-Seq tumor 7316UP-2100-1104756 210817_UNC31-K00269_0302_AHLCTHBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 206124662 BAM S17_L001_R1 submitted_unaligned CPTAC3 2178becd-560c-4622-a785-7e4cc3f4f170 240fc2203bff324b9826013bfceb2c87 {"aliquot_tag": "ALQ_28bbc092", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.miRNA-Seq.T.hg38 C846363 GBM miRNA-Seq tumor 7316UP-2100-1104756 50823f6f-290b-40cd-abda-b32f1b01a411_mirnaseq_gdc_realn.bam 241255644 BAM harmonized CPTAC3 e485b3c8-2d9d-4bf2-95ae-42c6b8cd1bdc f6a512354ea10d2ad63b865a7171493f {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.RNA-Seq.chimeric.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.chimeric.gdc_realn.bam 98350894 BAM chimeric harmonized CPTAC3 99393235-61e6-4aa4-bb28-5d13771fd425 4566aec83559d0e7a8222794e054aff5 {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.RNA-Seq.chimeric.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.chimeric.gdc_realn.bam 91119681 BAM chimeric harmonized CPTAC3 f99b08f6-acf4-4354-8ac7-1cebb0d8f95a f86cde1bc330198725cef5f9f4c21a82 {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.RNA-Seq.genomic.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.genomic.gdc_realn.bam 8713657595 BAM genomic harmonized CPTAC3 ca8264d0-25c2-409e-b8ea-59f81acace26 c49c629716b727caa3e2af34f824317c {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.RNA-Seq.genomic.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.genomic.gdc_realn.bam 7913953929 BAM genomic harmonized CPTAC3 36b7e9af-4115-4929-84b9-4a1fc44144bf 439d9f75e85bb8d939c38354c7f7300f {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.RNA-Seq.S17_L005_R1.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R1_001.fastq.gz 3998179847 FASTQ S17_L005_R1 submitted_unaligned CPTAC3 ed500025-1eaf-4dde-8174-8803c579bb73 8631c4f69148ceb691f1273b8bfe69b7 {"aliquot_tag": "ALQ_485a8946", "sample": "S17", "lane": "L005", "read": "R1", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.RNA-Seq.S17_L005_R2.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R2_001.fastq.gz 4319818318 FASTQ S17_L005_R2 submitted_unaligned CPTAC3 f3c87ab0-01ca-4b90-8c82-bd999d775e65 070bd09e55b4e5f039cdabb69404ea58 {"aliquot_tag": "ALQ_485a8946", "sample": "S17", "lane": "L005", "read": "R2", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.RNA-Seq.S3_L001_R1.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R1_001.fastq.gz 3798490040 FASTQ S3_L001_R1 submitted_unaligned CPTAC3 05606bfc-9000-4aa7-a4d1-694fc9ad6410 2534e9e52e34bae5f5e46e835aa08896 {"aliquot_tag": "ALQ_28bbc092", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.RNA-Seq.S3_L001_R2.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R2_001.fastq.gz 4184403140 FASTQ S3_L001_R2 submitted_unaligned CPTAC3 347ecdcb-c3a6-4292-9e5c-cf7f6e0c58ca cade5e883571d9a24519dc92a3cb5d0b {"aliquot_tag": "ALQ_28bbc092", "sample": "S3", "lane": "L001", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.RNA-Seq.transcriptome.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.transcriptome.gdc_realn.bam 14593630517 BAM transcriptome harmonized CPTAC3 8a16d438-af31-4412-abb1-edf3892531db b1d8d9f216a64dba0ce32e4525485599 {"aliquot_tag": "ALQ_485a8946", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.RNA-Seq.transcriptome.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.transcriptome.gdc_realn.bam 17800881750 BAM transcriptome harmonized CPTAC3 de568fae-4c3e-4133-b1a3-f85ead385635 7356bc5bcd574372727e2bbe6625a67a {"aliquot_tag": "ALQ_28bbc092", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.WGS.N C846363 GBM WGS blood_normal 7316UP-2100-1105216 7316UP-2100-1105216.WholeGenome.RP-2158.bam 45438721378 BAM submitted_aligned CPTAC3 42975547-bcff-41fb-a890-cc0fbe1b30c9 065d5dfc7f7234624c2d3eb7ee4a4647 {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C846363.WGS.N.hg38 C846363 GBM WGS blood_normal 7316UP-2100-1105216 1c7ec3f4-e1ac-4861-a0b3-7b9590b20b76_wgs_gdc_realn.bam 134274366455 BAM harmonized CPTAC3 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 4833ba43a257ff64f5ab6adf293caba3 {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C846363.WGS.T C846363 GBM WGS tumor 7316UP-2100-1105219 7316UP-2100-1105219.WholeGenome.RP-2158.bam 51804323984 BAM submitted_aligned CPTAC3 7fdcdd36-e083-470f-a770-6a005da83f68 682c7d43a1a8f2b5f53bf38d22eefcbd {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.WGS.T.hg38 C846363 GBM WGS tumor 7316UP-2100-1105219 d895aa40-8999-4f0b-be15-694f1bdb380c_wgs_gdc_realn.bam 148362374967 BAM harmonized CPTAC3 0189a0e1-989c-4c4f-bac9-347ea63ce6d9 d6b84549d3efdff96a5823072f8c46b7 {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.WXS.N C846363 GBM WXS blood_normal 7316UP-2100-1105216 7316UP-2100-1105216.WholeExome.RP-1303.bam 29207285501 BAM submitted_aligned CPTAC3 bd45cd04-f40e-405e-9bc2-1c42e8614cb1 4b81d4fab0d67c8ccd13a92280b158a9 {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C846363.WXS.N.hg38 C846363 GBM WXS blood_normal 7316UP-2100-1105216 1c7ec3f4-e1ac-4861-a0b3-7b9590b20b76_wxs_gdc_realn.bam 40366873272 BAM harmonized CPTAC3 1a0e8e5c-708a-45fd-853f-e8d2ceed7813 720a491d2c097a57f7f8a5693e4b72fe {"aliquot_tag": "ALQ_f2a0a018", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} +C846363.WXS.R C846363 GBM WXS recurrent_tumor 7316UP-2843-1105244 7316UP-2843-1105244.WholeExome.RP-1303.bam 23343495743 BAM submitted_aligned CPTAC3 b8590e83-d959-46b0-90aa-88bc644962fc f99e05802a978632cdb7d8a20b23ba84 {"aliquot_tag": "ALQ_2af2974b", "gdc_sample_type": "Recurrent Tumor", "state": "submitted"} +C846363.WXS.R.hg38 C846363 GBM WXS recurrent_tumor 7316UP-2843-1105244 c26c57b3-b748-4436-bc41-50eb6f46fcc2_wxs_gdc_realn.bam 31313947714 BAM harmonized CPTAC3 7137ecfb-10ec-467f-9073-534ae0f3b688 66737f31a1626d567422b78d8a6ad6e5 {"aliquot_tag": "ALQ_2af2974b", "gdc_sample_type": "Recurrent Tumor", "state": "validated"} +C846363.WXS.T C846363 GBM WXS tumor 7316UP-2100-1105219 7316UP-2100-1105219.WholeExome.RP-1303.bam 15815239997 BAM submitted_aligned CPTAC3 57b43f3a-59cf-4057-9240-5c0965ff2f09 caa81a2c6b3a25623daaf3b4e3918b00 {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C846363.WXS.T.hg38 C846363 GBM WXS tumor 7316UP-2100-1105219 d895aa40-8999-4f0b-be15-694f1bdb380c_wxs_gdc_realn.bam 22124861490 BAM harmonized CPTAC3 e3e1eeb8-e749-4520-83e2-3ae1091a7207 464cfbd7492f2719709a8776d6c340ad {"aliquot_tag": "ALQ_621fbd89", "gdc_sample_type": "Primary Tumor", "state": "validated"} +GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 59a32933-dcc8-4347-b3ea-ac4f0b41a1ed_mirnaseq_gdc_realn.bam 186345250 BAM harmonized CPTAC3 8d438eb7-7ede-4df3-9f1e-47063e2c0428 5297814bbb233db6b16068da94dcac73 {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.S46_L004_R1.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTAGAG_S46_L004_R1_001.unaln.bam 164935939 BAM S46_L004_R1 submitted_unaligned CPTAC3 b04dd504-b320-4b74-8b55-245d542a1591 99204b51c7bca4b47061d2e1b9ab03a7 {"aliquot_tag": "ALQ_dbd9aa06", "sample": "S46", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.chimeric.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.chimeric.gdc_realn.bam 59007709 BAM chimeric harmonized CPTAC3 391ac2fa-396b-4067-86fa-fdb010f0f8d5 8d99f60cef1dc655309732b42f26461f {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.genomic.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.genomic.gdc_realn.bam 8042385019 BAM genomic harmonized CPTAC3 cabfadbd-5245-4403-8315-10e6982d9c8e 001e5954f3d632b0259a5a1fdf36a286 {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.S13_L005_R1.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R1_001.fastq.gz 3765743130 FASTQ S13_L005_R1 submitted_unaligned CPTAC3 bc06c745-5e1d-4360-98b5-5932622e5ad6 f8bdda1f1e5572a24b4ee3ce7b40fcd2 {"aliquot_tag": "ALQ_dbd9aa06", "sample": "S13", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.S13_L005_R2.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R2_001.fastq.gz 4079829284 FASTQ S13_L005_R2 submitted_unaligned CPTAC3 0c2c947c-f8b3-4cf4-aa09-c4a484c21efc 293130ebc12c8588458aa3f0f66623e9 {"aliquot_tag": "ALQ_dbd9aa06", "sample": "S13", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.transcriptome.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.transcriptome.gdc_realn.bam 10109767872 BAM transcriptome harmonized CPTAC3 0a27c83b-fa20-4694-92d9-07edc67cce35 32d6f2eafa0146bd48ff813ac59b89da {"aliquot_tag": "ALQ_dbd9aa06", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 a1dfef8b-8633-4127-8bf3-ffb0038d94c3_mirnaseq_gdc_realn.bam 255528989 BAM harmonized CPTAC3 043612f4-af3a-4875-9e05-73a0cca6e184 3e850f62007829c7133df2f20422b51c {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.S5_L004_R1.A GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGGCC_S5_L004_R1_001.unaln.bam 232944125 BAM S5_L004_R1 submitted_unaligned CPTAC3 9215c9ae-265c-4863-b79c-2cefb9211a3b c4a772d8bfe747d235d6b36ef231b54f {"aliquot_tag": "ALQ_505dbad9", "sample": "S5", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.chimeric.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.chimeric.gdc_realn.bam 66511632 BAM chimeric harmonized CPTAC3 65568bf2-5e87-4828-8e9c-468db769f3e6 b0ac031872ef8c6f5adae5f2c7068798 {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.genomic.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.genomic.gdc_realn.bam 7999492501 BAM genomic harmonized CPTAC3 aade6614-661a-4070-87ef-938205656ddb cdecada683893afcab3540dfa0701a06 {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.S14_L004_R1.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R1_001.fastq.gz 3585455144 FASTQ S14_L004_R1 submitted_unaligned CPTAC3 eaee871f-6c1c-4b68-ae45-c02b26e03112 e43d9aa30db9773c7ec59aa287f8987c {"aliquot_tag": "ALQ_505dbad9", "sample": "S14", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.S14_L004_R2.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R2_001.fastq.gz 3823964368 FASTQ S14_L004_R2 submitted_unaligned CPTAC3 ac5d5942-5109-443b-a92f-a2cc70ea4764 03b608c12f6090518048609ae436d54a {"aliquot_tag": "ALQ_505dbad9", "sample": "S14", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.transcriptome.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.transcriptome.gdc_realn.bam 12363677026 BAM transcriptome harmonized CPTAC3 75842b27-96ac-4018-b1f3-469c4cc01c5f 17f4e1e58187c93d76a5ddd50f58932e {"aliquot_tag": "ALQ_505dbad9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.chimeric.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.chimeric.gdc_realn.bam 42694127 BAM chimeric harmonized CPTAC3 530ad5b6-dc87-4324-8628-f3e99b5a3e1d 275c0dc3b6882a09cb12a493aeebd86e {"aliquot_tag": "ALQ_59893dd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.genomic.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.genomic.gdc_realn.bam 7209390016 BAM genomic harmonized CPTAC3 03bd5ecf-022b-46b9-bf66-e39566aa5944 fdbd922682763dc88b9408d8a77bd7ef {"aliquot_tag": "ALQ_59893dd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.S20_L006_R1.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R1_001.fastq.gz 3415853912 FASTQ S20_L006_R1 submitted_unaligned CPTAC3 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0 1142a485efe83ea669c4dc28c77eeae2 {"aliquot_tag": "ALQ_59893dd7", "sample": "S20", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.S20_L006_R2.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R2_001.fastq.gz 3709398511 FASTQ S20_L006_R2 submitted_unaligned CPTAC3 222a2d66-7b96-4170-bf35-7b9c23d8953f 14cbbfc67bde2f79877cd7e8c927d607 {"aliquot_tag": "ALQ_59893dd7", "sample": "S20", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.transcriptome.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.transcriptome.gdc_realn.bam 8434383621 BAM transcriptome harmonized CPTAC3 a6dddff1-421e-4f4d-a2a9-162d370ce2da f154eb13a3657e23f809d783d9d6e10b {"aliquot_tag": "ALQ_59893dd7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 fd4e6d5f-3714-4791-9122-7a56650788b5_mirnaseq_gdc_realn.bam 403589976 BAM harmonized CPTAC3 a51bec4b-ffa3-4c69-ac7d-d35fc070a93f 50f6f67ce92a34daa193d2f63f30514c {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.S42_L004_R1.A GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 190813_UNC32-K00270_0196_AH5MCWBBXY_AGTCAA_S42_L004_R1_001.unaln.bam 353147146 BAM S42_L004_R1 submitted_unaligned CPTAC3 46fdcb55-7313-4293-981a-ee424abf1681 57cbe3e56107a6921f3f3651e96ba6c4 {"aliquot_tag": "ALQ_1e294707", "sample": "S42", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.chimeric.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.chimeric.gdc_realn.bam 104086707 BAM chimeric harmonized CPTAC3 43efe9fa-08c0-4002-b79b-5c8fc5703098 ee0849b993110e33df96332fc428f02b {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.genomic.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.genomic.gdc_realn.bam 9804688719 BAM genomic harmonized CPTAC3 45c87aac-c1fa-4852-b50b-e9159328c34d 9671438ae68c85c36c409f7fa98dac34 {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.S17_L006_R1.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R1_001.fastq.gz 4465868783 FASTQ S17_L006_R1 submitted_unaligned CPTAC3 ebbf052b-938b-4978-87bb-e203ecd9ea8d e0733607fd2f05ad4932dd4d8cc6f597 {"aliquot_tag": "ALQ_1e294707", "sample": "S17", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.S17_L006_R2.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R2_001.fastq.gz 4376071746 FASTQ S17_L006_R2 submitted_unaligned CPTAC3 5493009c-4e84-42d1-845e-f597e8538bdf aaec4180b35509ed2ed4785de4a4a201 {"aliquot_tag": "ALQ_1e294707", "sample": "S17", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.transcriptome.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.transcriptome.gdc_realn.bam 10575695024 BAM transcriptome harmonized CPTAC3 865815aa-c9ea-4e3b-addd-cf113af77ac7 21c123a30d80e484dd094d68c0190327 {"aliquot_tag": "ALQ_1e294707", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 bec258dd-30cd-4908-b5f9-e00bf74e3cb9_mirnaseq_gdc_realn.bam 402752717 BAM harmonized CPTAC3 4ba89b6f-5b90-4449-987b-9ffaf6553cf2 16544569a2c93fbf721ae36eec78a069 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.S41_L004_R1.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 190813_UNC32-K00270_0196_AH5MCWBBXY_CTTGTA_S41_L004_R1_001.unaln.bam 362426253 BAM S41_L004_R1 submitted_unaligned CPTAC3 206ee6f5-9a67-413f-bf39-6973090d9318 a32c794f0004c67d13834a8a4ec2d67a {"aliquot_tag": "ALQ_23496eb7", "sample": "S41", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.chimeric.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.chimeric.gdc_realn.bam 157294935 BAM chimeric harmonized CPTAC3 0cb12c33-b3f1-4f16-926b-0cccd6f1a0db 05d132a3c99d4b6a27e5c9278c87df48 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.genomic.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.genomic.gdc_realn.bam 11745035991 BAM genomic harmonized CPTAC3 3c625917-2193-428f-b5fe-55ed7673ed57 b905abf4116596eef7bcb486ff946db1 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.S18_L006_R1.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R1_001.fastq.gz 5085066252 FASTQ S18_L006_R1 submitted_unaligned CPTAC3 ae85444e-59ad-43b5-bab7-4c138b7291af ad92a12cdcb9075829349f6c7ae37196 {"aliquot_tag": "ALQ_23496eb7", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.S18_L006_R2.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R2_001.fastq.gz 5392721495 FASTQ S18_L006_R2 submitted_unaligned CPTAC3 41592dab-9730-40dc-8c7a-1c164445e2fc c83c21e32099a08875aa8a1c13fee84e {"aliquot_tag": "ALQ_23496eb7", "sample": "S18", "lane": "L006", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.transcriptome.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.transcriptome.gdc_realn.bam 10901357061 BAM transcriptome harmonized CPTAC3 76fa07ec-8149-46d7-b1d7-5c97f55d6d4f 00d0da525632444e34fc0205b99fad69 {"aliquot_tag": "ALQ_23496eb7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 6d2665ea-80dc-47cc-86ee-0689f34bacac_mirnaseq_gdc_realn.bam 241146961 BAM harmonized CPTAC3 73a5dc2c-3604-4360-a23c-c417a43b8f52 e891e693b2cbc468fb1d0097d16e7c20 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.S3_L004_R1.A GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTCCGC_S3_L004_R1_001.unaln.bam 216076917 BAM S3_L004_R1 submitted_unaligned CPTAC3 f8569758-ef9d-4d7c-bc10-2b2e8278dc5e bd6f1b1e46ab00c5a272389f9b35c476 {"aliquot_tag": "ALQ_2a9de9b9", "sample": "S3", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.chimeric.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.chimeric.gdc_realn.bam 66673576 BAM chimeric harmonized CPTAC3 375818fa-9ca9-45d6-a320-85dd98be6fc0 25baa2227f406ec047f92f5bee8913d0 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.genomic.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.genomic.gdc_realn.bam 9466463129 BAM genomic harmonized CPTAC3 52ac11b4-a30d-41af-a451-98d8fb381068 68b4578e14c4adb2a3fc0ea945735710 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.S16_L005_R1.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R1_001.fastq.gz 4343747954 FASTQ S16_L005_R1 submitted_unaligned CPTAC3 991c731a-f70e-46c6-82f8-fe5b1c4f2014 4e46a4a777ab0eaaf2339dd94a0ac815 {"aliquot_tag": "ALQ_2a9de9b9", "sample": "S16", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.S16_L005_R2.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R2_001.fastq.gz 4681867735 FASTQ S16_L005_R2 submitted_unaligned CPTAC3 169530bc-e43c-40b8-938d-55fc0c5afbb2 191d575dd05a76e0f293cdb4474a4c83 {"aliquot_tag": "ALQ_2a9de9b9", "sample": "S16", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.transcriptome.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.transcriptome.gdc_realn.bam 10306678253 BAM transcriptome harmonized CPTAC3 3b0ada5c-2071-4b17-91cf-0062a7bf1e81 8f0e68f2f86e1b51c6df72abbe958936 {"aliquot_tag": "ALQ_2a9de9b9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 9b53c058-3e78-447b-bf8a-3ebd67b36176_mirnaseq_gdc_realn.bam 261541459 BAM harmonized CPTAC3 4a26be34-750c-41cf-ab2e-db70e3b1343f 93f7413eb052a2026331584c8ce2b968 {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.S44_L004_R1.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L004_R1_001.unaln.bam 222201696 BAM S44_L004_R1 submitted_unaligned CPTAC3 88011b61-b19a-4364-92dc-6bc5016b3431 4154040b94c7f71641e1e34aeb3df546 {"aliquot_tag": "ALQ_64e91467", "sample": "S44", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.chimeric.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.chimeric.gdc_realn.bam 44368182 BAM chimeric harmonized CPTAC3 caf4913a-c5a1-4c4a-9075-2513d1399728 c1c3d86d5e32c6c16482fac57a53e43a {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.genomic.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.genomic.gdc_realn.bam 6966540778 BAM genomic harmonized CPTAC3 d8688d61-cba6-44a2-a06e-9213e8ab7775 acc22dca3fad8ea277759185b1b9bbda {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.S15_L005_R1.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R1_001.fastq.gz 3264885576 FASTQ S15_L005_R1 submitted_unaligned CPTAC3 440b3a6f-55b1-4a6e-b60f-875dff4a1648 9096833e0ea58b49e95ffd713f9cc04c {"aliquot_tag": "ALQ_64e91467", "sample": "S15", "lane": "L005", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.S15_L005_R2.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R2_001.fastq.gz 3488807105 FASTQ S15_L005_R2 submitted_unaligned CPTAC3 f64b4605-5731-4f25-b62a-c0bb5e52402e e3f6403767708b7208df0fed4d20452a {"aliquot_tag": "ALQ_64e91467", "sample": "S15", "lane": "L005", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.transcriptome.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.transcriptome.gdc_realn.bam 7406868324 BAM transcriptome harmonized CPTAC3 fc3db4af-b992-4f88-8592-e98b37feded8 c699844f816f139a144d16f68bf168a7 {"aliquot_tag": "ALQ_64e91467", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 34c82ef7-3cfc-4161-89b4-9b20f770af83_mirnaseq_gdc_realn.bam 320278768 BAM harmonized CPTAC3 e9c05438-5dc3-4a20-8256-2086a96ef3e6 08b53e7ff898f19df423240b3614f853 {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.S143_L008_R1.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 190828_UNC32-K00270_0200_BH7GVJBBXY_GTTTCG_S143_L008_R1_001.unaln.bam 283348378 BAM S143_L008_R1 submitted_unaligned CPTAC3 a47b8637-33a3-4e49-8897-a5b08fec15de b0c874e7cb87ae81397803412e1d0c0a {"aliquot_tag": "ALQ_6d3d9369", "sample": "S143", "lane": "L008", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.chimeric.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.chimeric.gdc_realn.bam 69113219 BAM chimeric harmonized CPTAC3 985b268b-bb9e-4164-8e5b-f3d86092c5d6 0cd3bba3f6cec799f1692aadb1780049 {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.genomic.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.genomic.gdc_realn.bam 8913744384 BAM genomic harmonized CPTAC3 7eb17d7f-4774-4f4d-ab20-29f6b93aff6e 2022f1892b6a1686639155ba3034bb4c {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.S15_L004_R1.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R1_001.fastq.gz 4306549496 FASTQ S15_L004_R1 submitted_unaligned CPTAC3 cdf168a3-2eb6-4368-bf54-f23950626b10 b747d1bfc7eae3c1a2398a28dd15b788 {"aliquot_tag": "ALQ_6d3d9369", "sample": "S15", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.S15_L004_R2.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R2_001.fastq.gz 4425085797 FASTQ S15_L004_R2 submitted_unaligned CPTAC3 aec464aa-f28d-407d-a76f-869a3121d472 d079a6542e3381afde42c39e4e43dacf {"aliquot_tag": "ALQ_6d3d9369", "sample": "S15", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.transcriptome.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.transcriptome.gdc_realn.bam 18132165211 BAM transcriptome harmonized CPTAC3 12e50a13-341d-4b55-8407-9e6b3531c2af 9c12b6a62f1785b8647671617a17e8e0 {"aliquot_tag": "ALQ_6d3d9369", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 5be949d3-314a-4699-8cfc-c62cbbc00736_mirnaseq_gdc_realn.bam 421417241 BAM harmonized CPTAC3 fcbf1822-3a29-4f5f-b6f0-0bcb37d8b165 82ec6745b18d8b671eb1f25d5a08c81c {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.S4_L004_R1.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGAAA_S4_L004_R1_001.unaln.bam 352802300 BAM S4_L004_R1 submitted_unaligned CPTAC3 14842e9b-1fa3-423c-9e35-8a3ab1163b20 c72b90870ab495f5969953ea1103d188 {"aliquot_tag": "ALQ_17fdc009", "sample": "S4", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.chimeric.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.chimeric.gdc_realn.bam 92430606 BAM chimeric harmonized CPTAC3 1f26118d-f64a-42dd-b9c1-df63307eb0ef 9357f486ac5631b62a87f88ad7a65f97 {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.genomic.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.genomic.gdc_realn.bam 10268900215 BAM genomic harmonized CPTAC3 245574d1-0a50-4757-918d-e7bb7975c8db e49d4383ac60be77bce84d837e5c7f23 {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.S13_L004_R1.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R1_001.fastq.gz 4854888143 FASTQ S13_L004_R1 submitted_unaligned CPTAC3 682b4036-c822-40d0-9662-2c18077f8493 eb02f8ffcd30f1698dfff8249c6f1e4e {"aliquot_tag": "ALQ_17fdc009", "sample": "S13", "lane": "L004", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.S13_L004_R2.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R2_001.fastq.gz 5090597822 FASTQ S13_L004_R2 submitted_unaligned CPTAC3 43e9394a-420b-4a99-907a-2f0a293a9f1c 18d6aeee1c0f9ee6f99474eb9695c62b {"aliquot_tag": "ALQ_17fdc009", "sample": "S13", "lane": "L004", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.transcriptome.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.transcriptome.gdc_realn.bam 19120343598 BAM transcriptome harmonized CPTAC3 8f6a015f-cec5-44a4-b75d-647c3776794f 993d91df8b613f317a1bd48eeaaa5c40 {"aliquot_tag": "ALQ_17fdc009", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +PT-Q2AG.RNA-Seq.chimeric.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.chimeric.gdc_realn.bam 520499169 BAM chimeric harmonized CPTAC3 1aeffca0-c5c1-4fdf-8fd9-6e1fd5e27c80 0403e2a1e7493091610853067e8ffd0e {"aliquot_tag": "ALQ_879c0898", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +PT-Q2AG.RNA-Seq.genomic.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.genomic.gdc_realn.bam 13387407531 BAM genomic harmonized CPTAC3 bee133f1-204b-43e5-a0a4-cc48750a983a f4fdaaf7cb394d13133753db100982c5 {"aliquot_tag": "ALQ_879c0898", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +PT-Q2AG.RNA-Seq.S8_L003_R1.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R1_001.fastq.gz 5898206072 FASTQ S8_L003_R1 submitted_unaligned CPTAC3 624298d8-62b5-48e2-8dbb-114aa81b99b3 daa12bbc628c67bbe970376515961d18 {"aliquot_tag": "ALQ_879c0898", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +PT-Q2AG.RNA-Seq.S8_L003_R2.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R2_001.fastq.gz 6587430382 FASTQ S8_L003_R2 submitted_unaligned CPTAC3 0fce5ae6-0a02-4802-8167-dd6405540e55 ad0d73b84334fddc373c6386f45998d8 {"aliquot_tag": "ALQ_879c0898", "sample": "S8", "lane": "L003", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +PT-Q2AG.RNA-Seq.transcriptome.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.transcriptome.gdc_realn.bam 24323053743 BAM transcriptome harmonized CPTAC3 53b425a2-f98f-4a42-89bb-a9d1aa8d96c6 4e4bb8671642eaee0296da2766eaa009 {"aliquot_tag": "ALQ_879c0898", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"}